Modified sequence Experiment N duplicates Sequence Length Missed cleavages Proteins Leading proteins Gene names Protein names Phospho (STY) All Phospho (STY) Probabilities Max Score Min PEP Intensity Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity corrected 7 Reporter intensity corrected 8 Reporter intensity corrected 9 Reporter intensity corrected 10 Phosphoproteome Fullproteome TMT Channel Normal 1 TMT Channel Normal 2 TMT Channel Normal 3 TMT Channel Normal 4 TMT Channel Normal 5 TMT Channel Normal 6 TMT Channel Normal 7 TMT Channel Normal 8 TMT Channel Normal 9 TMT Channel Normal 10 TMT Channel Ratio 1 TMT Channel Ratio 2 TMT Channel Ratio 3 TMT Channel Ratio 4 TMT Channel Ratio 5 TMT Channel Ratio 6 TMT Channel Ratio 7 TMT Channel Ratio 8 TMT Channel Ratio 9 TMT Channel Ratio 10 Curve signal Log EC50 Curve slope Curve top Curve bottom R2 Curve RMSE Log EC50 error Curve slope error Curve top error Curve bottom error EC50 pEC50 Curve effect size Regulation (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822;O75822-2;O75822-3 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 AAAAAAAGDS(0.802)DS(0.198)WDADAFSVEDPVRK;AAAAAAAGDS(0.847)DS(0.153)WDADAFSVEDPVRK 116.57 6.1954e-45 1080090000.0 687070.0 695880.0 679410.0 620730.0 638940.0 742590.0 781320.0 714900.0 962890.0 767660.0 True False 683370.891460653 719041.9451316561 775065.0224624154 699314.3543551187 720305.221705915 691256.5011688335 743524.5666677516 768249.4681886437 725598.6615649618 718667.2815732084 0.9508863266527324 1.0005213310360082 1.0784754535725471 0.9730710890640174 1.00227913552586 0.9618588725169581 1.0345880294426777 1.0689918518440087 1.0096447691017465 1.0 19.454964481093583 2.067861444567186 14.561821667086864 1.0383551740551484 0.9979919261931648 0.14097095975137264 0.03725852309260102 2.3481485200182752 501.32152303364154 0.014103820106754088 0.010416322408549745 116.91263385049322 -2.067861444567186 -0.04036324786198364 (ac)AAAAAAAGDSDS(ph)WDADAFSVEDPVRK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822;O75822-2;O75822-3 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 AAAAAAAGDS(0.471)DS(0.529)WDADAFSVEDPVRK 102.39 6.4753e-12 124730000.0 152560.0 139090.0 128170.0 130270.0 124080.0 158690.0 157910.0 149850.0 204170.0 158420.0 True False 151738.63391100947 143719.52656831933 146215.22192638894 146762.16864311602 139880.8525202208 147720.13381607897 150271.29002521958 161032.56792288204 153855.03923783428 148309.49996981444 1.0231214719346566 0.9690513864423431 0.9858790027351468 0.9895668765182719 0.9431685262824759 0.9960261065282034 1.0132276762837473 1.0857872756341107 1.0373916658686633 1.0 17.17825148706668 2.067655783005446 3.406454333917195 1.0504524690306425 0.9821768219096968 0.4401522495284025 0.02778749182422275 0.17260223036444086 4.005042894920478 0.011605348982013684 0.007635266074700664 116.85728260012058 -2.067655783005446 -0.06827564712094569 (ac)AAAAKPNNLSLVVHGPGDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAAKPNNLSLVVHGPGDLR 20 1 Q00796;A0A6I8PIS1;H0YKB3;Q00796-2;A0A6I8PRA7 Q00796 SORD Sorbitol dehydrogenase 0 ; 69.361 6.3892e-24 612380000.0 562000.0 672030.0 614490.0 657300.0 609870.0 662950.0 727800.0 649100.0 832750.0 785670.0 False True 558974.2544440702 694398.1122992865 701004.850757172 740514.1126055135 687533.3295173044 617121.8269164384 692593.5335340056 697539.138063014 627529.9207783046 735527.8679540718 0.7599633933638716 0.9440813088847456 0.9530636177077446 1.006779137635276 0.9347481713095821 0.8390189601286093 0.941627861715843 0.9483517463495619 0.8531694693279644 1.0 19.488420478320016 7.99997167310461 0.010478856077892843 1.7308532957530607 2.569402835596967e-09 0.1173315058389216 0.06884198102175543 32335.88603010777 26.187225352365363 1849.827851377129 2524.1814360262033 99993477.70400535 -7.99997167310461 -1.7308532931836578 (ac)AAADGDDSLYPIAVLIDELR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAADGDDSLYPIAVLIDELR 20 0 P30153;C9J9C1;M0QXG4;M0R0K6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 89.911 4.6336e-36 516280000.0 0.0 0.0 0.0 0.0 0.0 0.0 8265.3 0.0 0.0 0.0 False True 0.0 0.0 0.0 0.0 0.0 0.0 7865.475862487795 0.0 0.0 0.0 0.0 (ac)AAAITDMADLEELSRLS(ph)PLPPGS(ph)PGSAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAITDMADLEELSRLSPLPPGSPGSAAR 29 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 2 AAAIT(0.001)DMADLEELS(0.012)RLS(0.982)PLPPGS(0.838)PGS(0.166)AAR;AAAIT(0.001)DMADLEELS(0.005)RLS(0.994)PLPPGS(0.882)PGS(0.119)AAR 59.43600000000001 0.00068619 41620000.0 6497.700000000001 6452.3 7272.799999999999 5635.6 6511.4 5483.2 6793.6 5925.8 7535.6 8133.4 True False 6462.717105162339 6667.060905002283 8296.747023689175 6349.066382168915 7340.588193908495 5104.159290064433 6464.967613927761 6368.0132866026925 5678.552351866695 7614.3194486459315 0.8487583360206428 0.8755951139123667 1.0896242375495029 0.8338324160142744 0.9640504635268337 0.6703368993760979 0.8490538987141442 0.8363207414071823 0.7457728021742669 1.0 12.894499382183701 2.8053486644074805 24.999997277830303 0.8149325024305046 0.9241463468902678 0.19520352884187864 0.1033127425799335 284.6244229690214 106539.19213296902 0.029942770582887066 0.03175910248289497 638.7761086717337 -2.8053486644074805 0.10921384445976312 (ac)AAAVAAAGAGEPQS(ph)PDELLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAVAAAGAGEPQSPDELLPK 21 0 Q9NS69 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog 1 AAAVAAAGAGEPQS(1)PDELLPK;AAAVAAAGAGEPQS(1)PDELLPK 68.972 6.6271e-25 89322000.0 63697.0 56139.0 67629.0 46503.0 70333.0 134136.0 59894.0 49485.0 91573.0 79722.0 True False 63354.06242940197 58007.552678257896 77150.57535819417 52390.27503194001 79289.49065364852 124863.49404218011 56996.69840270093 53177.82197973846 69006.06116533365 74634.07370656192 0.8488624469098464 0.7772261354287807 1.0337178654018855 0.7019618845665903 1.062376562284276 1.673009228105446 0.7636819963331267 0.7125139944634029 0.9245919154385721 1.0 16.18754681357415 4.245942542344771 24.913923924085225 0.9659905349787369 0.8130442483098664 0.05982036988917605 0.263453852523986 591.281202130857 1995516.5453804084 0.06937890024712277 0.18206545429587498 17617.429503910917 -4.245942542344771 -0.15294628666887045 (ac)AADVSVTHRPPLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 11 AADVSVTHRPPLSPK 15 1 A0A087WZ13;Q8IY67-2;Q8IY67;Q8IY67-3 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 AADVSVTHRPPLS(1)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.004)HRPPLS(0.996)PK;AADVSVT(0.006)HRPPLS(0.994)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.011)HRPPLS(0.989)PK;AADVSVTHRPPLS(1)PK;AADVSVT(0.017)HRPPLS(0.983)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVS(0.001)VT(0.014)HRPPLS(0.985)PK 109.03 4.5001e-12 46663082000.0 6806895.0 6563748.0 6060462.0 5907736.0 5448642.0 7615685.0 7725998.0 6807124.0 11081974.0 7520116.0 True False 6770247.433637123 6782218.384310545 6913722.371119966 6655654.771866184 6142494.262068678 7089230.621344174 7352261.960561506 7315106.158755292 8350969.998543646 7040175.758584769 0.9616588656016866 0.9633592422803263 0.9820383195248206 0.9453819052387006 0.8724916071276401 1.0069678463211074 1.0443293197042958 1.0390516387087743 1.1861877153223765 1.0 22.747180015640364 2.2752522181468646 2.1608949919167304 1.07380483907346 0.947954774854708 0.5438493664464842 0.052568134097865836 0.24292722322085825 2.316539464552306 0.023588878212366632 0.016403990834713045 188.47433434683686 -2.2752522181468646 -0.125850064218752 (ac)AAEVYFGDLELFEPFDHPEESIPKPVHTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAEVYFGDLELFEPFDHPEESIPKPVHTR 29 1 Q6NZY4 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 0 ; 116.35 2.86e-33 163006000.0 139798.0 160815.0 151649.0 139816.0 137949.0 162263.0 164065.0 143174.0 192750.0 156354.0 False True 139045.34310101802 166167.63006027983 172999.86104326247 157516.6912643424 155515.9874622175 151046.14073601633 156128.5491608362 153858.3709028409 145249.34521767418 146375.35385860578 0.9499231901794866 1.1352159067761693 1.1818920090220595 1.0761148452388973 1.062446534629329 1.0319096538746706 1.0666314037515614 1.0511221107035784 0.9923073891112892 1.0 17.159313132845206 3.1210516995724364 2.5556803122864946 1.0367311177090501 1.0970412169608976 0.1596694326239061 0.05920806642492153 0.5087784783752609 6.757325492704375 0.018598625882567808 0.02324360871959567 1321.4529341023806 -3.1210516995724364 0.06031009925184749 (ac)AALHTTPDS(ph)PAAQLER ddPTM_BT-474_Trastuzumab_2h_R1 6 AALHTTPDSPAAQLER 16 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 AALHTT(0.003)PDS(0.996)PAAQLER;AALHTT(0.001)PDS(0.999)PAAQLER;AALHTT(0.003)PDS(0.996)PAAQLER;AALHTTPDS(1)PAAQLER;AALHTT(0.001)PDS(0.999)PAAQLER;AALHTTPDS(1)PAAQLER 166.92 3.7283e-58 17147210000.0 103671.0 265239.0 154525.0 227663.0 187440.0 151305.0 193515.0 123074.0 157962.0 137671.3 True False 103112.84685493102 274067.31977463875 176280.77684462228 256485.11245718645 211309.37295607832 140845.6414836591 184153.9401509113 132258.40683710884 119034.38168235666 128884.99976767019 0.8000376074857711 2.126448541480204 1.3677369528058994 1.990030747717189 1.639518744128389 1.0928008824731297 1.4288236837713437 1.026173775656745 0.9235704845166591 1.0 16.975724840385627 2.1930981792700948 1.1207181979541312 0.9757717847473268 1.61186300099101 0.3067782078949377 0.3609658527517051 0.5600821592583465 1.3370610793973146 0.2370484611510877 0.1286303128702963 155.99051046702343 -2.1930981792700948 0.6360912162436831 (ac)AAS(ph)DTERDGLAPEKT(ph)SPDRDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AASDTERDGLAPEKTSPDRDK 21 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 2 AAS(0.995)DT(0.005)ERDGLAPEKT(0.607)S(0.393)PDRDK;AAS(0.979)DT(0.021)ERDGLAPEKT(0.851)S(0.149)PDRDK 86.449 3.6331e-07 1038470000.0 1373040.0 1005300.0 919870.0 882120.0 849720.0 1399420.0 1475500.0 1335940.0 2522500.0 1481160.0 True False 1365647.7051990852 1038760.802783317 1049379.7003466277 993796.3015541999 957926.8053149744 1302681.3892803423 1404124.4280426288 1435634.6265658638 1900863.6747682642 1386631.1007151257 0.9848673554882631 0.7491255621250656 0.7567836173625648 0.7166984074146833 0.6908303187639048 0.9394577898970475 1.0126157038584245 1.035339987560834 1.3708503103586338 1.0 20.40315259349827 2.141516703515518 1.430575280075221 1.1516324530087791 0.77588147272634 0.6211137261764039 0.1208557613719195 0.26665557715070837 1.0432783659369658 0.07479877841571134 0.04015039221639291 138.52134619631184 -2.141516703515518 -0.37575098028243914 (ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEKR ddPTM_BT-474_Trastuzumab_2h_R1 15 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 AASAAAASAAAASAAS(0.001)GS(0.999)PGPGEGS(0.001)AGGEKR;AASAAAASAAAAS(0.002)AAS(0.166)GS(0.821)PGPGEGS(0.01)AGGEKR;AASAAAASAAAASAASGS(0.996)PGPGEGS(0.003)AGGEKR;AASAAAASAAAAS(0.001)AAS(0.145)GS(0.854)PGPGEGS(0.001)AGGEKR;AASAAAASAAAAS(0.002)AAS(0.034)GS(0.955)PGPGEGS(0.009)AGGEKR;AASAAAASAAAASAAS(0.028)GS(0.965)PGPGEGS(0.007)AGGEKR;AASAAAASAAAASAASGS(0.999)PGPGEGS(0.001)AGGEKR;AASAAAASAAAASAAS(0.014)GS(0.982)PGPGEGS(0.004)AGGEKR;AASAAAASAAAASAASGS(0.999)PGPGEGS(0.001)AGGEKR;AASAAAASAAAAS(0.02)AAS(0.107)GS(0.765)PGPGEGS(0.107)AGGEKR;AASAAAASAAAASAAS(0.031)GS(0.967)PGPGEGS(0.001)AGGEKR;AASAAAASAAAAS(0.021)AAS(0.102)GS(0.824)PGPGEGS(0.053)AGGEKR;AASAAAASAAAASAASGS(0.997)PGPGEGS(0.003)AGGEKR;AASAAAASAAAASAAS(0.003)GS(0.985)PGPGEGS(0.013)AGGEKR;AASAAAASAAAASAAS(0.018)GS(0.981)PGPGEGS(0.001)AGGEKR 191.65 3.5196999999999973e-155 19415146200.0 6594478.300000001 7306590.8 6684674.6 6927800.1 6399297.7 7490219.2 7834273.2 7228027.999999999 10218537.7 8080723.8 True False 6558974.3615482105 7549786.25785059 7625818.679446787 7804858.882336643 7214210.330485892 6972437.976783441 7455299.475486063 7767420.152542494 7700316.005225 7565005.088828299 0.8670151949050563 0.9979882589900457 1.0080388036629737 1.0317057015417677 0.9536292766199923 0.9216699651768989 0.9854982763323921 1.0267567650434384 1.017886427676899 1.0 22.850909622238742 1.928818138018811 5.565180525244152 1.0158922841486175 0.9684009729297819 0.20896967228808006 0.044191608151239535 0.39156037312089015 22.0963461504655 0.02027936407157232 0.012304589400288618 84.8824952873882 -1.928818138018811 -0.04749131121883565 (ac)ACPLDQAIGLLVAIFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ACPLDQAIGLLVAIFHK 17 0 P06703;R4GN98 P06703 S100A6 Protein S100-A6;Protein S100 0 ; 175.91 4.746000000000001e-27 6038600000.0 2476080.0 3012360.0 2815050.0 2555560.0 2165900.0 3337440.0 3378220.0 2493370.0 3599250.0 2951360.0 False True 2462749.0603983514 3112624.5815899265 3211384.5711467653 2879093.6339725293 2441714.526704918 3106730.628288709 3214802.5925463685 2679437.9304763153 2712263.0649790578 2763001.6780135795 0.891331004246407 1.1265373475370828 1.162281078835806 1.0420166071134682 0.88371807593702 1.1244041771709123 1.1635181469949758 0.9697561719914187 0.9816364161345716 1.0 21.397805007645818 1.6098406820055728 24.99999999999996 0.9817661587441114 1.0590617178335378 0.10850079547552771 0.09488683987673599 0.4350867301885754 5397.734880465002 0.04743576921047994 0.024636408881757554 40.72308605115302 -1.6098406820055728 0.07729555908942631 (ac)ADANKAEVPGATGGDS(ph)PHLQPAEPPGEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADANKAEVPGATGGDSPHLQPAEPPGEPR 29 1 A0A0A0MQW0;A0A0A0MR39;Q9P2K5-2;Q9P2K5;A0A087WWC8;Q9P2K5-4 A0A0A0MQW0 MYEF2 Myelin expression factor 2 1 ADANKAEVPGAT(0.005)GGDS(0.995)PHLQPAEPPGEPR;ADANKAEVPGAT(0.005)GGDS(0.995)PHLQPAEPPGEPR 87.891 9.6364e-26 3549100000.0 891610.0 1237500.0 1049130.0 1353760.0 1154940.0 1228030.0 1402950.0 1117860.0 1967380.0 1520220.0 True False 886809.6708271846 1278689.4394154523 1196838.3847985682 1525145.877195859 1302014.7631343012 1143139.1765716774 1335083.948710543 1201280.3895780642 1482545.5605413613 1423198.2580741781 0.6231104245638863 0.8984619199476326 0.8409498662667616 1.0716327599076976 0.9148512905687095 0.8032185045803338 0.938087115506403 0.8440710089145237 1.0416999544023402 1.0 20.440705219254024 5.015539459747658 1.7768499979230057 0.9232802683396203 0.30031334613409316 0.5455126091934512 0.08360699500459218 1.692610882748344 2.8827861840567133 0.021075301604308386 2.242289980939028 103642.87694769286 -5.015539459747658 -0.6229669222055272 (ac)ADEAALALQPGGS(ph)PSAAGADR ddPTM_BT-474_Trastuzumab_2h_R1 4 ADEAALALQPGGSPSAAGADR 21 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 ADEAALALQPGGS(0.81)PS(0.19)AAGADR;ADEAALALQPGGS(0.957)PS(0.043)AAGADR;ADEAALALQPGGS(0.965)PS(0.035)AAGADR;ADEAALALQPGGS(0.97)PS(0.03)AAGADR 113.86 1.1195999999999999e-44 1108100000.0 16095.199999999999 49754.2 48390.2 33692.0 45833.1 32865.6 48104.1 48453.6 47094.8 54224.0 True False 16008.545231544836 51410.238469950964 55203.119544841575 37957.40374548141 51669.67361093278 30593.678429300704 45777.12090749266 52069.45367439537 35488.917577988694 50763.377896497994 0.31535618579568986 1.0127426621367053 1.0874595393828168 0.7477320327830267 1.0178533374253118 0.6026722353204802 0.9017745233744715 1.0257287011230882 0.6991047296014744 1.0 15.631500451730517 4.745343540079422 24.546453593275388 0.9017030604398307 0.31535583677809076 0.5617163706081243 0.15477190693731052 441.38064472402687 1597240.934051329 0.035761386960673595 0.34714754843110496 55634.416833129195 -4.745343540079422 -0.58634722366174 (ac)ADEELEALRR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADEELEALRR 10 1 O14737;O14737-2;Q3HM38;X6R2P6;K7ESJ4 O14737 PDCD5 Programmed cell death protein 5 0 ; 74.301 1.7437e-05 2582900000.0 55811.0 88521.0 86995.0 95470.0 37424.0 67028.0 99549.0 67671.0 95219.0 64874.0 False True 55510.51977718504 91467.36797292561 99243.13982590463 107556.49221124034 42189.72457057342 62394.51212694029 94733.43455588998 72720.95364637532 71753.55331923065 60733.68577857429 0.9139988634901542 1.5060401291369276 1.6340707558525247 1.770952821855318 0.6946676136928472 1.0273460490183506 1.5598169836303624 1.1973742860182202 1.181445723232295 1.0 15.89020930502125 0.537882503801453 0.2631778801601565 0.9268155991323836 1.3891611041487446 0.07125457253481904 0.32270183926212725 11.07791113804217 1.8086900497695328 1.6248771680999334 0.6369446388790958 3.450503750547233 -0.537882503801453 0.46234550501636096 (ac)ADGDS(ph)GS(ph)ERGGGGGPCGFQPASR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR 132.13 5.5134e-12 2915000000.0 25931.0 50552.0 37942.0 34811.0 41890.0 53350.0 36266.0 32137.0 31535.0 32139.0 True False 25791.390377204938 52234.59276067069 43283.903802223955 39218.06903074776 47224.44319851752 49662.04007239159 34511.67503042628 34535.226128379414 23763.62179735073 30087.861504417786 0.8572025091719463 1.7360686386103283 1.438583589460773 1.3034515272874874 1.5695513352314379 1.6505672915670573 1.1470298420962537 1.1478125862587019 0.7898076037694314 1.0 14.876893950274901 1.7467852146264757 1.9063953808621033 0.9219698993612444 1.4354420431671697 0.4091692337481999 0.2412280323561597 0.2903685264146167 2.117777178916586 0.16148177976521405 0.06659559948251549 55.81940651113599 -1.7467852146264757 0.5134721438059253 (ac)ADHSFS(ph)DGVPSDSVEAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADHSFSDGVPSDSVEAAK 18 0 Q99733;Q99733-2;C9JZI7;E9PNJ7;C9J6D1;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PP22;E9PKI2;C9J1B1 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 ADHS(0.003)FS(0.995)DGVPS(0.002)DSVEAAK 97.129 6.0171000000000005e-27 0.0 277600.0 241930.0 197350.0 210630.0 189880.0 288130.0 260940.0 240900.0 390100.0 293740.0 True False 276105.4324442595 249982.49380022686 225135.16460304928 237295.73640361952 214060.09249306514 268212.25128506403 248317.335312398 258877.18126541402 293965.0820721902 274993.26171653403 1.0040443562899803 0.9090495244858453 0.8186933861496614 0.8629147307915729 0.7784194098316509 0.9753411760377607 0.9029942543405524 0.9413946350884312 1.0689901281116208 1.0 18.06903674250232 1.470540514288958 2.614710292397805 1.0341948149014755 0.8878311531991568 0.41794644032308115 0.06508392179788282 0.25215187907159364 3.3328574684561936 0.05268581433214841 0.01769950651433056 29.548845297017614 -1.470540514288958 -0.14636366170231863 (ac)ADMEDLFGS(ph)DADS(ph)EAER ddPTM_BT-474_Trastuzumab_2h_R1 2 ADMEDLFGSDADSEAER 17 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 2 ADMEDLFGS(1)DADS(1)EAER;ADMEDLFGS(1)DADS(1)EAER 71.07300000000002 8.4508e-10 74991000.0 26719.0 37330.0 31627.9 27373.0 32211.0 35218.0 30761.0 33454.0 36402.0 39222.0 True False 26575.147872759975 38572.50648353848 36080.83340536501 30838.418993383064 36312.87992044514 32783.462554254664 29272.972911568508 35950.50735596992 27431.214861809443 36718.818380356395 0.7237473602085459 1.0504833266686424 0.9826251223995626 0.8398532511024595 0.9889446752968386 0.8928245515599967 0.7972199052905466 0.9790758238343122 0.7470614815994303 1.0 15.164232012804742 2.496408025884744 24.220323215088257 0.8816509776630397 0.9255846080246437 0.021475899390202224 0.10940611439124653 2067.4509204404067 2596304.525479137 0.03377756516415408 0.031354774249867594 313.6230874410208 -2.496408025884744 0.043933630361604026 (ac)ADSRDPASDQMQHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADSRDPASDQMQHWK 15 1 P04040 P04040 CAT Catalase 0 88.087 9.8273e-06 771230000.0 326240.0 470160.0 440400.0 484690.0 471440.0 501220.0 528270.0 399390.0 626780.0 478780.0 False True 324483.5600886717 485808.99138227885 502404.4919745783 546051.7043036146 531475.0895561976 466571.8411449685 502715.56191262644 429194.5098613261 472318.46742170525 448223.8504958197 0.7239319365306687 1.0838535049950664 1.1208785329446986 1.2182566895973495 1.1857358526733606 1.0409348824897482 1.1215725387137 0.9575450065554442 1.0537557671222368 1.0 18.773859892755343 4.738403662283076 7.564102652517105 1.0881604376780853 0.7201093445185155 0.6758758642278025 0.07541863295849856 0.06292911864362113 36.12125283452671 0.019887011717785074 0.11872994314034545 54752.46324053524 -4.738403662283076 -0.36805109315956985 (ac)ADVLDLHEAGGEDFAMDEDGDESIHK ddPTM_BT-474_Trastuzumab_2h_R1 5 ADVLDLHEAGGEDFAMDEDGDESIHK 26 0 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 0 ;;;; 138.08 1.1665999999999996e-60 1274230000.0 412930.0 440186.0 389015.0 399282.0 429132.0 474592.0 519363.0 435960.0 535440.0 442243.0 False True 410706.8307608355 454837.3249119439 443784.9306210045 449831.0602606945 483779.4165353598 441784.57210939954 494239.42753067054 468493.5489600244 403487.986528412 414018.6731167189 0.9920007415826152 1.0985913304053259 1.0718959299110984 1.0864994491054742 1.1684966112602708 1.0670643639903 1.193761198764424 1.131575891090178 0.9745647062026641 1.0 18.659336312222674 4.7398822972816435 6.445564381661794 1.09986284942476 0.9897205654069196 0.1429866846657133 0.06499432623526823 0.1996397381917522 48.712237784967 0.014953165329470355 0.0953246582313417 54939.19571823008 -4.7398822972816435 -0.11014228401784043 (ac)AEAPAS(ph)PAPLS(ph)PLEVELDPEFEPQSRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEAPASPAPLSPLEVELDPEFEPQSRPR 28 1 O43524 O43524 FOXO3 Forkhead box protein O3 2 AEAPAS(1)PAPLS(0.999)PLEVELDPEFEPQS(0.001)RPR 48.69300000000001 0.029746 30613000.0 1668.2 2127.6 2003.8 5446.1 1224.5 1250.7 1679.3 1235.8 1185.1 5952.9 True False 1659.2185965544443 2198.4158798386397 2285.917622658173 6135.575701598786 1380.4328168198792 1164.242052831118 1598.0658434510253 1328.0216712652477 893.0479845264106 5572.980825465901 0.29772551683160214 0.3944775603377125 0.41017862688717766 1.100950441738843 0.24770098086681916 0.20890831841930613 0.28675243886514307 0.2382964723648094 0.1602460177945708 1.0 12.44423347431481 -1.6801244613244477 6.648781696259097 1.0046834488404441 0.3728831920779959 0.3531003877610168 0.25512602125808465 0.018403413919304095 0.000885395067783139 0.25666975639122874 0.060358515848645974 0.02088697460327471 1.6801244613244477 -0.6318002567624482 (ac)AEAPAS(ph)PAPLSPLEVELDPEFEPQSRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEAPASPAPLSPLEVELDPEFEPQSRPR 28 1 O43524 O43524 FOXO3 Forkhead box protein O3 1 AEAPAS(0.999)PAPLS(0.001)PLEVELDPEFEPQSRPR 70.07300000000001 0.00071709 202030000.0 0.0 0.0 2242.9 0.0 0.0 0.0 0.0 0.0 0.0 2270.7 True False 0.0 0.0 2558.680824363716 0.0 0.0 0.0 0.0 0.0 0.0 2125.7819819559236 0.0 0.0 1.2036421637224923 0.0 0.0 0.0 0.0 0.0 0.0 1.0 11.053777927777773 -1.2263605454288307 4.34850869572963 1.0003734400379758 0.13373801818180367 0.3440229424619031 0.35885675982940185 520415221.35120726 845384181.4054366 2466625.525598881 0.08782533155277648 0.059379899001003184 1.2263605454288307 -0.8666354218561722 (ac)AEAPASPAPLS(ph)PLEVELDPEFEPQSRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEAPASPAPLSPLEVELDPEFEPQSRPR 28 1 O43524 O43524 FOXO3 Forkhead box protein O3 1 AEAPAS(0.006)PAPLS(0.97)PLEVELDPEFEPQS(0.024)RPR 49.618 0.027145 29122000.0 1757.8 1437.9 1636.2 1595.6 690.98 1643.5 1184.1 1105.4 1077.1 922.17 True False 1748.3362001099395 1485.7596322710942 1866.5627378946504 1797.6027963994468 778.9722072406698 1529.8887133828598 1126.8205592987301 1187.8905611074656 811.6631374005539 863.3163210905421 2.0251397516746112 1.720991015661885 2.1620843858677503 2.082206431738384 0.9023021900671022 1.772106788680078 1.3052232788502471 1.3759621266130135 0.940168878511714 1.0 9.753745452833304 2.784646922051796 0.4452791260017483 0.9924577985727822 2.120647557300321 0.5691128009154016 0.30378544675420516 0.9713868789412397 0.3908028481949162 0.28991079764650574 0.44571925963796705 609.0415499906602 -2.784646922051796 1.128189758727539 (ac)AENDVDNELLDYEDDEVETAAGGDGAEAPAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK 32 1 Q13838-2;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;F6R6M7;F6U6E2;F6S2B7;A0A0G2JHN7 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 76.859 3.6522e-06 37959000.0 72898.0 60377.0 48354.0 54731.0 56505.0 70447.0 68262.0 68690.0 93990.0 76235.0 False True 72505.52526772926 62386.611946332756 55161.82289949758 61659.93898830417 63700.57681862576 65577.16470440051 64959.90627383664 73815.99660075246 70827.42390147444 71369.61703193281 1.0159158516331706 0.8741340438805942 0.7729034453809189 0.8639522187812182 0.8925447475796922 0.9188386799814185 0.9101899236025285 1.0342776053810836 0.9924030259232612 1.0 16.12302241057907 1.88497263634287 3.2550184592497087 1.011132179333521 0.8836622674887326 0.4615850179056158 0.05734211766019682 0.22256283578227498 4.069158094857448 0.030994736146801483 0.016654654471219093 76.73131416252664 -1.88497263634287 -0.1274699118447885 (ac)AENTEGDLNSNLLHAPYHTGDPQLDTAIGQWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AENTEGDLNSNLLHAPYHTGDPQLDTAIGQWLR 33 0 Q6PCE3 Q6PCE3 PGM2L1 Glucose 1,6-bisphosphate synthase 0 ; 103.07 7.268699999999998e-47 258630000.0 3081.8 3823.1 3702.0 3549.2 5488.7 4567.5 6892.4 9665.0 4011.2 6983.4 False True 3065.2079312201695 3950.3495723872447 4223.209421639162 3998.528356092325 6187.653410926312 4251.759475738489 6558.988280475102 10386.25137787557 3022.6935073262493 6537.713433210467 0.46885015113226547 0.604240245881709 0.6459765275403446 0.6116096089162434 0.9464552819788782 0.6503435060552328 1.0032541724996025 1.5886672739608296 0.4623472010827949 1.0 12.674570425678723 2.7586446005136 1.0447598976473216 1.101892955363398 0.5742161924482553 0.25598347815884037 0.281931350703143 0.5768195810904655 1.3279508523600878 0.1521408984904338 0.14393385000740014 573.6468333264936 -2.7586446005136 -0.5276767629151428 (ac)AEPPS(ph)PVHCVAAAAPTATVSEKEPFGK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEPPSPVHCVAAAAPTATVSEKEPFGK 27 1 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein 1 AEPPS(0.999)PVHCVAAAAPT(0.001)ATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK 92.817 3.677e-05 2167600000.0 1672770.0 1370590.0 1286170.0 1242570.0 928740.0 1735250.0 1606250.0 1522730.0 2496500.0 1913150.0 True False 1663763.9921822168 1416209.2596108494 1467251.5564099508 1399879.234596428 1047009.5339267419 1615296.2518391272 1528549.551029126 1636363.8448662641 1881271.0263861143 1791051.1290698797 0.928931600655217 0.790714031902768 0.8192125465295439 0.7815964669436359 0.5845782495726239 0.9018705416176339 0.853437138795097 0.9136332393347436 1.050372597326737 1.0 20.77237509179751 1.659423796560895 1.389037703799739 1.0255594132047414 0.7909172211712442 0.5001271510581572 0.08764590426360239 0.33300052515491013 1.2385560731646836 0.07390400088271115 0.027223921770763534 45.648214657922054 -1.659423796560895 -0.23464219203349723 (ac)AEVEETLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEVEETLKR 9 1 Q9NP97;Q8TF09;H3BNG9;H3BPA0;Q7Z4M1;Q9NP97-2 Q9NP97 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 0 65.252 0.024262 203990000.0 322370.0 372350.0 369480.0 374330.0 313500.0 380810.0 405540.0 335430.0 430530.0 423850.0 False True 320634.3957386739 384743.4446596717 421499.5724222689 421720.13961908023 353422.3667399196 354485.50103031774 385922.48088675586 360461.4898790277 324431.6503064342 396799.53012375813 0.8080513493518277 0.9696166841217623 1.0622481641820671 1.062804029751622 0.8906824225061214 0.8933616955638959 0.972588049099731 0.9084221691658836 0.8176210546550974 1.0 18.59805079177318 3.1930608840811088 24.999876611768286 0.9123329385862311 0.9814310173205677 0.123087538931266 0.08030167594790351 253.92141137827795 139516.51617526505 0.023809718282622728 0.028458163444436645 1559.7711530309862 -3.1930608840811088 0.0690980787343366 (ac)AGS(ph)QDIFDAIVMADER ddPTM_BT-474_Trastuzumab_2h_R1 2 AGSQDIFDAIVMADER 16 0 F5H8D9;F5H179;A6YPU5;F5H6T8;F5GZY6;B4DFA5;Q8WV07 F5H8D9 ORAOV1 Oral cancer-overexpressed protein 1 1 AGS(1)QDIFDAIVMADER;AGS(1)QDIFDAIVMADER 51.01300000000001 0.0048999 16450400.0 31870.2 28690.4 25766.3 26842.1 24646.0 29128.2 32008.6 26724.3 31906.8 33122.4 True False 31698.614384312095 29645.34262028696 29393.971075305555 30240.30710781749 27784.52201171312 27114.636094407437 30460.22173327366 28718.602969245712 24043.79666921549 31008.50007448666 1.0222556495208632 0.9560392327611716 0.9479326960251936 0.9752263745481444 0.896029216020475 0.8744259164188649 0.9823184501057466 0.9261526001018978 0.7753937343457118 1.0 14.920376121964503 6.688457825869467 0.4808726388029595 0.9102718093390958 1.7001101929521116 0.23076179878822112 0.06015566223788941 41.003906545431605 1.5984428786853984 0.03293455148692325 27.309625018836208 4880427.053513737 -6.688457825869467 0.7898383836130158 (ac)AHS(ph)PVQSGLPGMQNLK ddPTM_BT-474_Trastuzumab_2h_R1 14 AHSPVQSGLPGMQNLK 16 0 B4DR80;Q9Y6E0-2 B4DR80 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit 1 AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.991)PVQS(0.009)GLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.987)PVQS(0.013)GLPGMQNLK;AHS(1)PVQSGLPGMQNLK 122.69 7.343399999999999e-72 8508451000.0 4013701.0 4275952.0 4063694.0 3907317.0 3905897.0 4716020.0 4610073.0 4127973.0 5342380.0 4590280.0 True False 3992091.679780102 4418274.477452427 4635826.792938555 4401982.931573757 4403289.830884701 4390012.637716969 4387066.15680093 4436023.306682165 4025822.0332243727 4297324.400463573 0.9289714500840235 1.0281454378859103 1.0787705001834318 1.0243543473466639 1.024658466651877 1.0215688248351456 1.0208831700784975 1.0322756425378614 0.9368206023241085 1.0 22.035007258066184 1.2536549051112533 24.983824867245648 0.9684102916158935 1.0230037341963134 0.22886709286662077 0.03751179610960116 272.7382035863968 451436.16606833274 0.024588537308410843 0.008906698208662377 17.933080793758275 -1.2536549051112533 0.05459344258041987 (ac)AKS(ph)PENSTLEEILGQYQR ddPTM_BT-474_Trastuzumab_2h_R1 4 AKSPENSTLEEILGQYQR 18 1 Q86SQ7-3;Q86SQ7-4;Q86SQ7;Q86SQ7-2 Q86SQ7-3 SDCCAG8 Serologically defined colon cancer antigen 8 1 AKS(1)PENSTLEEILGQYQR;AKS(0.999)PENS(0.001)TLEEILGQYQR;AKS(0.998)PENS(0.002)TLEEILGQYQR;AKS(0.987)PENS(0.006)T(0.007)LEEILGQYQR 113.24 1.1203e-23 282538000.0 160919.0 160769.0 152066.0 158861.0 163935.0 203097.0 184450.0 164691.0 251371.0 211208.0 True False 160052.6299837818 166120.09897808701 173475.57101863326 178972.7863116149 184811.15053112834 189057.38242891326 175527.44883257418 176981.07870395278 189423.98524883 197728.5246157338 0.8094564519450522 0.8401423077470754 0.8773421607012251 0.905143993055282 0.9346711653783433 0.9561462252162551 0.8877194080808257 0.8950710528382202 0.9580002967045708 1.0 17.593161485884163 7.356910904778009 0.3279598478968865 0.9451131449440446 3.7639437865818645e-32 0.7114962915092762 0.029325702252601935 24.076669720843412 0.5099361345583794 0.029003894964183593 12.773819376798036 22746307.439303156 -7.356910904778009 -0.9451131449440446 (ac)ALYHTEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ALYHTEER 8 0 A0A0C4DGB9 A0A0C4DGB9 PPA2 0 98.997 0.0012734000000000005 344290000.0 132730.0 146470.0 155970.0 130760.0 157540.0 149680.0 155910.0 133800.0 171190.0 147570.0 False True 132015.39642768932 151345.16540701527 177929.2202844571 147314.20259287517 177601.7851872632 139332.9739088205 148368.03766596175 143784.83542263313 129002.5183284754 138151.95625896682 0.9555810862368501 1.095497809117648 1.287924001241991 1.066320062212754 1.2855538929492059 1.0085486856779637 1.0739481487170894 1.0407730684110432 0.9337726502161089 1.0 17.07589646557837 1.9350878546806634 1.2135840923520482 0.9786491244845851 1.1337540722444108 0.25746715569921186 0.10033723591755539 0.6345035868432591 1.7256913815935955 0.07606901054836768 0.033740159335791095 86.1167942706866 -1.9350878546806634 0.15510494775982575 (ac)ANNS(ph)PALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK 41 1 Q5VTL8;Q5VTL8-2 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 ANNS(0.333)PALT(0.333)GNS(0.333)QPQHQAAAAAAQQQQQCGGGGATKPAVSGK 91.911 3.3045e-28 324700000.0 233200.0 217310.0 235610.0 231570.0 256030.0 301370.0 287890.0 306540.0 342840.0 334120.0 True False 231944.4771109556 224543.03198333085 268781.84004116803 260886.7382565929 288633.9028912969 280537.0012486722 273963.6608534006 329415.5713785803 258351.67582063502 312796.17554547614 0.7415195428987403 0.7178573446166878 0.859287488321899 0.8340470845004422 0.9227539383688328 0.8968683864483058 0.8758536141806829 1.053131710463282 0.8259425658581121 1.0 18.25486334783877 4.9298621745659235 0.3542592457088435 0.9755888679933076 0.46982304764265437 0.5929583998607738 0.0628047822150896 4.5951985114319625 0.41767647271846925 0.055987517521352635 1.028077279993957 85086.7968325304 -4.9298621745659235 -0.5057658203506532 (ac)AQS(ph)SPQLDIQVLHDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSSPQLDIQVLHDLR 16 0 F6SS63;Q8N5C8-2;Q8N5C8;A0A0A0MQY2 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 AQS(0.5)S(0.5)PQLDIQVLHDLR;AQS(0.5)S(0.5)PQLDIQVLHDLR 62.924 0.00071889 70283000.0 10402.3 9238.2 11295.8 10589.900000000001 11489.4 14267.099999999999 8981.4 9463.0 11976.3 11548.1 True False 10346.295172604176 9545.687902390173 12886.150455146317 11930.580254193099 12952.506986990864 13280.848958140914 8546.935369720137 10169.17711214035 9024.901339198082 10811.090371174178 0.9570075558882298 0.8829532983871847 1.1919380943762077 1.1035501364417264 1.198075914851881 1.228446761813397 0.7905710780578616 0.9406245589487094 0.8347817869751005 1.0 13.400224415457863 2.2323276900070366 24.999980768814076 0.8889128038906325 1.0937469442949048 0.43090692452136325 0.11380405892672385 152.29243922778647 610831.8913718412 0.04456970222427601 0.0337361134558328 170.73701721633165 -2.2323276900070366 0.20483414040427228 (ac)AS(ph)AVSPANLPAVLLQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASAVSPANLPAVLLQPR 17 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 AS(0.596)AVS(0.404)PANLPAVLLQPR 80.596 2.4413e-10 101460000.0 5486.7 0.0 5833.4 0.0 4597.6 5429.6 4221.4 3145.3 5782.0 5581.7 True False 5457.160216829679 0.0 6654.692015178253 0.0 5183.077107889812 5054.264531903602 4017.1947546859733 3380.018257509778 4357.103574830568 5225.471127266211 1.0443384115844652 0.0 1.2735104363039056 0.0 0.9918870436092951 0.9672361417386344 0.768771782839729 0.6468351226500966 0.8338202372022399 1.0 12.351345400770285 (ac)AS(ph)GVAVSDGVIK ddPTM_BT-474_Trastuzumab_2h_R1 13 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(0.98)GVAVS(0.02)DGVIK;AS(1)GVAVSDGVIK 86.898 5.7812e-17 45742001000.0 17037640.0 13322980.0 13990420.0 12056770.0 12001160.0 15286270.0 16368310.0 14721290.0 24376300.0 14183800.0 True False 16945911.23929974 13766427.335388524 15960149.529089399 13583155.845791535 13529436.589551687 14229566.134909028 15576512.312283613 15819867.412995934 18369087.490685295 13278577.740637869 1.276184209656606 1.03673959698693 1.2019472145909742 1.0229375548423032 1.0188919968549108 1.0716182420170457 1.173055775741187 1.1913826707946802 1.3833625746278826 1.0 23.66259729309421 2.042501506381021 3.4218398742049616 1.208797149171794 1.0987008046160294 0.10160707204462605 0.11554050492270615 0.44171693318551597 10.539207642780523 0.04902587811507927 0.03143106510247796 110.2812059024274 -2.042501506381021 -0.11009634455576456 (ac)AS(ph)GVQVADEVCR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGVQVADEVCR 12 0 P60981;F6RFD5 P60981 DSTN Destrin 1 AS(1)GVQVADEVCR;AS(1)GVQVADEVCR 94.309 2.3588e-11 4478700000.0 59496.0 35428.0 25481.0 21304.0 27417.8 27559.0 30252.0 30821.0 30411.0 41451.0 True False 59175.68014662705 36607.19956332177 29068.50331517761 24001.084215651663 30909.29431196739 25653.911196907964 28788.595186137314 33121.01952586682 22916.61653652237 38805.56169201348 1.5249278084488058 0.9433493027071902 0.7490808545920407 0.6184959879241045 0.7965171218827839 0.6610885161388544 0.7418677614982766 0.8535121792267063 0.5905497958876037 1.0 15.243975816767621 4.733081781208654 2.2707896254286295 0.7451662220707578 1.7162822055182758 0.8099275942694695 0.11268405581756799 0.2230166697674864 1.3558754258845396 0.02635170685190231 0.43111704254420097 54085.61610025839 -4.733081781208654 0.971115983447518 (ac)AS(ph)PGHSDLGEVAPEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPGHSDLGEVAPEIK 16 0 F8WDN0;S4R325;Q8TCY9-2 F8WDN0 URGCP;URGCP-MRPS24 Up-regulator of cell proliferation 1 AS(0.959)PGHS(0.041)DLGEVAPEIK 41.092 6.522199999999999e-05 0.0 325310.0 235090.0 198140.0 200500.0 206550.0 312840.0 295340.0 248310.0 409840.0 321140.0 True False 323558.56710533873 242914.82853509416 226036.38973624646 225883.27944227174 232852.91818223425 291214.1071461475 281053.2758916366 266840.1530926312 308840.42357463844 300644.5702582134 1.0762162337654904 0.8079800953214052 0.7518392550449573 0.7513299816067468 0.7745123019592365 0.968632518112779 0.9348356953536514 0.8875601939640928 1.0272609390862637 1.0 18.197699377649702 2.730707562403328 24.47004399112841 0.9486678983638399 0.8220434957099085 0.3149253339383963 0.09493457496638742 590.7055541752557 1840628.17479808 0.03119608816908058 0.02991862243197942 537.9074538593272 -2.730707562403328 -0.12662440265393138 (ac)AS(ph)PGKDNYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPGKDNYR 9 1 O15131;Q5TD90 O15131 KPNA5 Importin subunit alpha-6 1 AS(1)PGKDNYR;AS(1)PGKDNYR 78.49600000000002 0.00031612 2695700000.0 2917500.0 2640200.0 2269000.0 2391000.0 2361300.0 3191900.0 3009500.0 2868500.0 4366300.0 3094900.0 True False 2901792.5041647223 2728077.4609653964 2588455.4774984485 2693700.354845244 2661997.558478381 2971251.4659243952 2863918.987593556 3082562.035947856 3290283.8704224695 2897380.8323228024 1.0015226413430722 0.9415667524722053 0.8933777184628189 0.9297018620385261 0.9187599810081863 1.0254956589680935 0.988451002244527 1.0639133114843573 1.1356062805815832 1.0 21.466317894524025 2.246626534771646 1.3157684670321204 1.0703572579803229 0.9352783892247234 0.5812422192238882 0.045090435913814016 0.29573251805617196 0.997180877508076 0.027477315832733978 0.015992615733354365 176.45197949227494 -2.246626534771646 -0.1350788687555995 (ac)AS(ph)PPESDGFSDVRK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPPESDGFSDVRK 14 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 AS(1)PPESDGFSDVRK 85.81299999999997 6.5776e-06 0.0 199790.0 233870.0 189420.0 211530.0 226900.0 229610.0 237440.0 258840.0 398990.0 273700.0 True False 198714.35283875559 241654.2215725996 216088.68953184504 238309.6763113406 255794.3700583343 213737.6011438019 225954.12009111594 278155.9551628879 300664.26069208706 256232.23167364072 0.7755244199404826 0.943106259482574 0.8433314111983932 0.930053470458284 0.9982911532540366 0.8341557958876789 0.8818333221204989 1.085561926952153 1.1734053078655569 1.0 17.967092439386203 1.7007056473046576 4.939371899518229 1.0999308305666065 0.8908422500264488 0.6232641462363026 0.07087331867937179 0.09639829163432699 5.546771993767202 0.03618448410958415 0.017828656826574456 50.20022310720765 -1.7007056473046576 -0.20908858054015766 (ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER 37 1 P35548;D6RIS4 P35548 MSX2 Homeobox protein MSX-2 1 AS(0.333)PS(0.333)KGNDLFS(0.333)PDEEGPAVVAGPGPGPGGAEGAAEER 75.759 0.0080899 69703000.0 26715.0 24990.0 22194.0 21222.0 24452.0 29074.0 25676.0 31734.0 41649.0 32318.0 True False 26571.169408315534 25821.777043225993 25318.72228629379 23908.70302405931 27565.817261641212 27064.182812834333 24433.95378815488 34102.15222198687 31385.162018007308 30255.437571168157 0.8782279002183879 0.8534590512031726 0.8368321306455406 0.7902283008738583 0.9111029115609284 0.8945229348996452 0.8075888418628971 1.127141266483762 1.0373395507561827 1.0 14.8849068294401 1.7455178923882024 11.879366125951842 1.0598493332145922 0.8539268986372336 0.8050543574018043 0.045450820549287674 0.03594693011931223 33.53545394666868 0.020888992309714194 0.01143919266695796 55.65675636718071 -1.7455178923882024 -0.2059224345773586 (ac)AS(ph)PSLERPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPSLERPEK 10 1 Q13601-2;Q13601 Q13601-2 KRR1 KRR1 small subunit processome component homolog 1 AS(0.995)PS(0.005)LERPEK;AS(0.996)PS(0.004)LERPEK 78.113 0.00049809 371600000.0 342220.0 285370.0 326700.0 275310.0 242224.0 327630.0 327090.0 260700.0 402420.0 358910.0 True False 340377.52554421633 294868.36794019205 372696.52027269406 310164.21777182963 273069.7906258701 304981.7092580628 311267.40709485876 280154.7578077766 303248.9831517326 336004.0565216893 1.0130161197093903 0.8775738334610198 1.1092024427646643 0.9230966464591129 0.8126978985095773 0.9076727001906778 0.9263799083769878 0.8337838557901233 0.9025158395138532 1.0 18.35811912496584 3.48815530071336 24.73679282956475 0.8861103021129105 0.9924375150467621 0.28566242075847204 0.07120759354986252 518.2677613144333 1161883.5095813766 0.018142589444414433 0.026310435180685873 3077.197002457753 -3.48815530071336 0.10632721293385161 (ac)AS(ph)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHAR 31 1 P49356 P49356 FNTB Protein farnesyltransferase subunit beta 1 AS(0.966)PS(0.028)S(0.006)FTYYCPPSSSPVWSEPLYSLRPEHAR;AS(0.238)PS(0.238)S(0.238)FT(0.238)Y(0.037)Y(0.007)CPPS(0.002)SSPVWSEPLYSLRPEHAR;AS(0.976)PS(0.021)S(0.003)FTYYCPPSSSPVWSEPLYSLRPEHAR;AS(0.999)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR 186.3 7.331599999999996e-82 3060280000.0 4205.4 0.0 8905.3 8270.3 5392.4 9113.7 9339.3 4819.6 4348.2 13723.9 True False 4182.758593663864 0.0 10159.088833744792 9317.319132027033 6079.090176741126 8483.691370342176 8887.522379409369 5179.263025432912 3276.644372894893 12848.028952378083 0.3255564420945412 0.0 0.7907118571572346 0.7251944377275442 0.47315352411436834 0.6603107295124753 0.6917420884052685 0.4031173220912042 0.25503089890596864 1.0 13.649259428560685 4.241063347575413 24.99999991671873 0.5967282613400958 0.16277818191084698 0.4257384778755965 0.21268250511208972 60.0584780114433 599894.9001049729 0.051310766162593696 0.12782742972421327 17420.609574163336 -4.241063347575413 -0.43395007942924885 (ac)AS(ph)PTDGTDLEASLLSFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASPTDGTDLEASLLSFEK 18 0 G3V5T8 G3V5T8 LIN52 1 AS(0.499)PT(0.499)DGT(0.003)DLEASLLSFEK;AS(0.467)PT(0.467)DGT(0.066)DLEASLLSFEK;AS(0.469)PT(0.469)DGT(0.063)DLEASLLSFEK 83.76899999999998 1.512299999999999e-126 184405000.0 154719.0 148828.0 133253.0 142911.0 124152.0 160011.0 164717.0 138316.0 185805.0 156237.0 True False 153886.01009489706 153781.65001157433 152013.8641441608 161003.51794700508 139962.0212934436 148949.81619537875 156749.0094299544 148637.84227441656 140015.847409442 146265.82089877457 1.0520982219174508 1.0513847258820719 1.0392986085885658 1.1007596782192195 0.9569017589577977 1.0183501195297135 1.0716721682944292 1.01621719524812 0.9572697609672054 1.0 17.15823315723704 2.4574234750289192 0.38538875538723083 0.9897312052002458 1.0617477601879908 0.23539553636817367 0.03861753514762145 2.3335676741120026 0.7631014484387985 0.04354755815644514 0.061197922248581976 286.6972155504063 -2.4574234750289192 0.07201655498774495 (ac)ASAVS(ph)PANLPAVLLQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASAVSPANLPAVLLQPR 17 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 AS(0.02)AVS(0.98)PANLPAVLLQPR;AS(0.09)AVS(0.91)PANLPAVLLQPR 90.653 2.2059000000000002e-15 311680000.0 8811.5 5958.4 2957.0 11394.4 9141.9 4924.1 6838.4 3437.1 4760.6 10409.8 True False 8764.059863049682 6156.721742071137 3373.3198972952487 12836.929871705845 10306.066776713473 4583.708557084597 6507.60046677514 3693.5938552401544 3587.413918771776 9745.437651721837 0.8992987463730001 0.631754258977108 0.3461434999483318 1.3172245650186678 1.0575273420268183 0.47034404414610775 0.6677586681420479 0.3790074891698235 0.3681121409809591 1.0 13.250511260683066 2.71801677810839 24.512701758107504 0.5336013008880459 0.8361648829258418 0.1706346463116689 0.29276674993299273 1077.5293156977477 1285695.2012404692 0.09740779995743606 0.09194088848179767 522.4163711325679 -2.71801677810839 0.3025635820377959 (ac)ASCAS(ph)IDIEDATQHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASCASIDIEDATQHLR 16 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 AS(0.001)CAS(0.999)IDIEDATQHLR;AS(0.002)CAS(0.998)IDIEDATQHLR 107.07 1.8048e-14 589350000.0 257518.0 163077.0 164914.0 189638.0 170363.0 273947.0 303810.0 271141.0 397596.0 223970.0 True False 256131.5517009396 168504.91936287182 188132.45774181566 213646.15135597796 192057.71822938762 255009.6886918738 289113.5496330949 291374.91824610037 299613.7933134439 209676.04284963565 1.221558496716854 0.8036441220121234 0.8972529965034227 1.0189344879481028 0.915973592496294 1.2162080380100846 1.3788582887384329 1.3896433483106756 1.4289367027415003 1.0 17.677802505940512 2.580972819165746 3.4583390084218615 1.3377058437377267 0.9607654701732664 0.5096523470348362 0.15183623921700515 0.1691878248663322 3.77002833108748 0.04933249833043977 0.045371350538964926 381.0419746844299 -2.580972819165746 -0.3769403735644603 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASEDNRVPSPPPTGDDGGGGGR 22 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 AS(0.023)EDNRVPS(0.872)PPPT(0.105)GDDGGGGGR;AS(0.001)EDNRVPS(0.999)PPPTGDDGGGGGR;ASEDNRVPS(0.981)PPPT(0.019)GDDGGGGGR;AS(0.022)EDNRVPS(0.966)PPPT(0.012)GDDGGGGGR;AS(0.002)EDNRVPS(0.997)PPPT(0.001)GDDGGGGGR;ASEDNRVPS(0.809)PPPT(0.191)GDDGGGGGR 121.26 1.201e-30 5729580000.0 80781.69999999998 103186.5 86095.5 111434.9 102411.59999999999 87040.7 101312.6 87898.4 93748.5 103716.0 True False 80346.7803028905 106621.00027494357 98216.99804449873 125542.54691432232 115453.11021888984 81023.7812807688 96411.72248628369 94457.8249470312 70645.4383405402 97096.75608426498 0.8274919116057998 1.0980902408563784 1.0115373778219898 1.2929633489029313 1.1890521874767306 0.8344643482265532 0.9929448353826898 0.9728216343814453 0.7275777398704327 1.0 16.567135476848705 2.7357085848727642 24.998720999075953 0.9169387228513816 1.0922220091558468 0.29804418638666663 0.13592581311483914 342.0865564905086 2998456.6143786153 0.04395004376735046 0.04318167080764778 544.1374096909962 -2.7357085848727642 0.1752832863044652 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGREETPTEGGALSLKPGLPIR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIR 41 3 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 AS(0.003)EDNRVPS(0.984)PPPT(0.012)GDDGGGGGREETPTEGGALSLKPGLPIR;ASEDNRVPS(0.95)PPPT(0.05)GDDGGGGGREETPTEGGALSLKPGLPIR;ASEDNRVPS(0.974)PPPT(0.026)GDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.043)EDNRVPS(0.937)PPPT(0.019)GDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.001)EDNRVPS(0.992)PPPT(0.007)GDDGGGGGREETPTEGGALSLKPGLPIR 121.95 9.195799999999997e-37 26146100000.0 1110696.0 1212237.0 1239860.0 1253404.0 1194580.0 1304764.0 1407926.0 1261330.0 1601360.0 1394233.0 True False 1104716.1361459272 1252585.5757322581 1414421.5109436887 1412084.817885592 1346702.6821696123 1214568.7357640835 1339819.2405803776 1355456.849503961 1206726.2851246423 1305251.8562770756 0.8463624325322705 0.9596504840873886 1.083638766067718 1.0818485421757855 1.0317569560948685 0.9305244270851724 1.0264833059896175 1.0384638359144596 0.9245160459426931 1.0 20.31589677975476 4.624272760347008 3.3988406434314857 1.0179092192804124 0.8420768338639697 0.4960662240555368 0.0512160218711708 0.212901788404946 3.9715212772065205 0.012811963619763273 0.07917106819931982 42099.09503835569 -4.624272760347008 -0.17583238541644275 (ac)ASGRPEELWEAVVGAAER ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGRPEELWEAVVGAAER 18 1 Q96B36;H9KV91;M0R2V8 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 0 ; 69.352 2.7087e-11 54267000.0 1235.1 0.0 990.29 1286.9 1989.73 0.0 2655.2 1862.8 1334.9 0.0 False True 1228.4503588325101 0.0 1129.7142242450159 1449.8214080511696 2243.110321446317 0.0 2526.7578321509914 2001.8115951067352 1005.9317817435698 0.0 0.0 (ac)ASHLRPPS(ph)PLLVR ddPTM_BT-474_Trastuzumab_2h_R1 8 ASHLRPPSPLLVR 13 1 Q8TDB6;Q8TDB6-2 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;AS(0.002)HLRPPS(0.998)PLLVR 113.11 4.2878e-06 10940080000.0 33160.9 50397.5 50631.299999999996 70102.4 47446.1 65791.9 45226.0 48748.1 47685.0 48762.3 True False 32982.36539892233 52074.95032156791 57759.746944851126 78977.35665223899 53488.0795999327 61243.860810473765 43038.24559990239 52385.93075983608 35933.67069626349 45650.24826649463 0.7225013368247113 1.1407375052500808 1.265266874512145 1.7300531684119025 1.1716930713647555 1.3415887785088827 0.9427822900032432 1.147549745053307 0.7871517036773117 1.0 15.478335085802028 2.2329442718086314 24.992946313737683 0.9980511670789151 1.2465124055531698 0.20526592556362788 0.24585843741439473 243.23279998589416 1082383.857553703 0.09409091819894538 0.07142848224508618 170.97959018791792 -2.2329442718086314 0.24846123847425472 (ac)ASIWVGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASIWVGHR 8 0 P12429;D6RFG5;D6RCA8;D6RAZ8 P12429 ANXA3 Annexin A3;Annexin 0 56.011 0.014803 197350000.0 24766.0 45348.0 34386.0 33684.0 37783.0 49703.0 34834.0 27241.0 39014.0 44184.0 False True 24632.662607761285 46857.38076655514 39227.24991153006 37948.39094630169 42594.44109261369 46267.148598277 33148.94634119752 29273.861746995153 29399.522460816293 41364.139292174434 0.5955076795813197 1.1328020253384061 0.9483395661746878 0.9174224725976842 1.0297431983716392 1.118532849709994 0.8013933544476987 0.707711129686999 0.7107490440730216 1.0 15.336092942317585 2.0713847497055347 9.924078208553473 0.7689078395422105 0.9659948895947764 0.1660250567583479 0.15988272826982136 0.49015584049227057 64.41345572221252 0.056794001252950164 0.04192764445013274 117.86496992123956 -2.0713847497055347 0.19708705005256588 (ac)ASLEVSRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASLEVSRSPR 10 1 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 ASLEVSRS(1)PR;ASLEVS(0.001)RS(0.999)PR 108.53 2.0873e-08 2607200000.0 67941.0 72910.0 71668.0 55429.0 79894.0 64398.0 64558.0 58454.0 66358.0 74541.0 True False 67575.2132049547 75336.76527497423 81758.23145057692 62446.30571673657 90068.0273311615 59946.31783658616 61435.08290449072 62816.13430339761 50004.960051644135 69783.72956223917 0.9683519873308761 1.0795749345523642 1.1715944671265792 0.8948548051024064 1.2906737415177996 0.8590300090384371 0.8803639944422518 0.9001544442730414 0.716570472305373 1.0 16.09060308337526 2.6447184375979265 24.99999995137709 0.8688480399520954 1.0756365533327188 0.4374724386305444 0.11885078947010312 50.09739835510239 13342.900255414894 0.03574500294832031 0.03370071672754637 441.284260567738 -2.6447184375979265 0.20678851338062343 (ac)ASPTDGT(ph)DLEASLLSFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPTDGTDLEASLLSFEK 18 0 G3V5T8 G3V5T8 LIN52 1 AS(0.3)PT(0.3)DGT(0.4)DLEASLLSFEK 70.96300000000002 0.00059191 12830000.0 27982.0 26886.0 23002.0 25513.0 21828.0 26098.0 29569.0 27023.0 33141.0 27327.0 True False 27831.348021092464 27780.884257069807 26240.481663031896 28742.943184093176 24607.666415307736 24293.90668808387 28138.634505450693 29039.593480013595 24973.844616648188 25582.96746417825 1.0878858388911465 1.0859132857034322 1.025701248292416 1.1235187327013405 0.9618769382310262 0.9496125389715111 1.099897208752305 1.1351143498374603 0.9761902973772308 1.0 14.642895997074367 2.7831214797780834 0.005802390175510466 3.922889445104457e-05 2.1055324666964306 0.07168325413556698 0.06387535376335156 31880.454625126178 70.14474534599005 12516.557681592423 12933.190312985702 606.9060681119353 -2.7831214797780834 2.1054932378019795 (ac)ASSHS(ph)SSPVPQGSSSDVFFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSSPVPQGSSSDVFFK 20 0 Q9P1Q0-4;Q9P1Q0-2;Q9P1Q0 Q9P1Q0-4 VPS54 Vacuolar protein sorting-associated protein 54 1 AS(0.022)S(0.089)HS(0.365)S(0.261)S(0.261)PVPQGS(0.001)S(0.001)S(0.001)DVFFK 47.774 3.0156e-06 68861000.0 49325.0 103110.0 102920.0 112420.0 116330.0 109190.0 107220.0 91379.0 67637.0 98266.0 True False 49059.4396805227 106541.95401868876 117410.24140332323 126652.36047331759 131143.93595806992 101641.95230561263 102033.35897982422 98198.1649931599 50968.767639366175 91994.57975024483 0.5332861980968193 1.158132949875291 1.2762734687421708 1.376737203617483 1.4255615528013856 1.1048689235991878 1.109123594638223 1.0674342473193217 0.5540409856509022 1.0 16.48926124074296 1.4160536249551623 5.21593150123199 0.7763082667892739 1.1587522586590322 0.2417996635880879 0.2511410938871312 0.26746553212405516 12.302869880560992 0.17292101111645836 0.06383796796325686 26.064753673408863 -1.4160536249551623 0.3824439918697583 (ac)ASSHSSS(ph)PVPQGSSSDVFFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSSPVPQGSSSDVFFK 20 0 Q9P1Q0-4;Q9P1Q0-2;Q9P1Q0 Q9P1Q0-4 VPS54 Vacuolar protein sorting-associated protein 54 1 AS(0.028)S(0.028)HS(0.096)S(0.359)S(0.443)PVPQGS(0.024)S(0.006)S(0.016)DVFFK 60.528 1.2394e-24 69289000.0 44853.0 89259.0 95794.0 103700.0 108450.0 92602.0 86977.0 74979.0 64534.0 86016.0 True False 44611.516431636766 92229.93185679504 109280.96254362559 116828.40936739951 122260.464666489 86200.64170166077 82769.59022559383 80574.31371564748 48630.46041129642 80526.3852379974 0.5539987458742437 1.1453380352813252 1.3570826781885645 1.4508090611805153 1.518265898874582 1.0704645619804365 1.027856769939028 1.0005951897320169 0.6039071574809683 1.0 16.297173953025283 1.8628533673898533 1.6012670051142506 0.8288522839311325 1.216264297757345 0.22079185525021505 0.2690456458698591 0.5587204321441204 2.697959010422949 0.19848206649242817 0.0863670918004096 72.9211262125345 -1.8628533673898533 0.3874120138262125 (ac)ATELQCPDSMPCHNQQVNSASTPS(ph)PEQLRPGDLILDHAGGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATELQCPDSMPCHNQQVNSASTPSPEQLRPGDLILDHAGGNR 42 1 F8W6E9;A0A0A0MRR5;Q96BW1-2;Q96BW1 F8W6E9 UPRT Uracil phosphoribosyltransferase homolog 1 ATELQCPDSMPCHNQQVNS(0.007)AS(0.018)T(0.117)PS(0.858)PEQLRPGDLILDHAGGNR 63.33 0.00019395 182000000.0 4091.0 0.0 4804.0 4286.5 7208.4 8845.8 6498.0 3436.9 5339.2 9166.6 True False 4068.9745105528314 0.0 5480.361442883455 4829.170460495253 8126.34701246583 8234.31066677341 6183.6669152294135 3693.3789302245755 4023.425701614556 8581.579740078905 0.47415215307612096 0.0 0.6386191830495145 0.5627367695415542 0.9469523396156324 0.9595331997343531 0.7205744283129573 0.43038450286434277 0.46884441134116434 1.0 13.067027535346389 4.1264291454882285 6.892527429015032 0.6974248698554929 0.24026447830570233 0.4341338532985999 0.2186414513392461 0.20181931998238395 11.326103970764052 0.057501290097528496 0.12618777339963547 13379.169181518 -4.1264291454882285 -0.4571603915497906 (ac)ATS(ph)PQKS(ph)PSVPKS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7;Q9NVD7-2 Q9NVD7 PARVA Alpha-parvin 3 AT(0.468)S(0.534)PQKS(0.962)PS(0.139)VPKS(0.764)PT(0.133)PK 73.389 7.7712e-05 82824000.0 239910.0 139660.0 106080.0 103490.0 94938.0 184340.0 163470.0 178580.0 312630.0 170180.0 True False 238618.3512165065 144308.49867374718 121015.14193611083 116591.82338893127 107027.79155838756 171597.00968968458 155562.331583957 191906.54641086576 235586.52552737444 159318.96670157165 1.497739761666133 0.9057835464377487 0.7595777479701482 0.7318138311010092 0.6717831139268351 1.0770657960085288 0.9764206660676417 1.2045430019034429 1.4787098510917622 1.0 17.281558502363822 1.8129021037095767 2.1722715816788525 1.2661602032677588 0.9103117946113176 0.2120785400552846 0.24508822632612023 0.4134992728117315 3.7501602456958447 0.15738542076417128 0.07151656540751157 64.99831581745207 -1.8129021037095767 -0.3558484086564412 (ac)ATSPQKS(ph)PS(ph)VPKSPTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7;Q9NVD7-2 Q9NVD7 PARVA Alpha-parvin 2 AT(0.027)S(0.109)PQKS(0.851)PS(0.601)VPKS(0.361)PT(0.051)PK 56.327 0.00041083 342050000.0 508260.0 324660.0 298490.0 256210.0 255580.0 441600.0 385530.0 361490.0 663890.0 352760.0 True False 505523.5846329947 335466.11183888593 340514.79747841007 288646.15973019676 288126.59805865615 411073.231414585 366880.44103237847 388466.2194090266 500283.2051702288 330246.5547869695 1.5307459754094643 1.0158050310480404 1.0310926565095107 0.8740323117568699 0.8724590578833337 1.2447464642886403 1.1109288975597043 1.1762915124417046 1.5148778932544624 1.0 18.333183985439028 1.9992627874869577 1.5742844464758448 1.249477187618427 1.062648573827126 0.07227584758253769 0.21439623811502342 0.8993402974444376 4.159248137762205 0.14025600563708324 0.06792955384133316 99.83039453860894 -1.9992627874869577 -0.1868286137913009 (ac)ATSPQKS(ph)PSVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSPQKSPSVPK 12 1 Q9NVD7;Q9NVD7-2 Q9NVD7 PARVA Alpha-parvin 1 AT(0.144)S(0.109)PQKS(0.734)PS(0.013)VPK 61.212 0.004460899999999999 668830000.0 667760.0 510170.0 442710.0 444420.0 432610.0 603510.0 644320.0 606780.0 894360.0 596130.0 True False 664164.8543551107 527150.7000457223 505039.7198956978 500683.5264325912 487700.31921963836 561790.7742097295 613151.780058575 652061.0047664085 673956.9618100073 558084.4730274297 1.1900794350221373 0.9445715219169214 0.904952107260786 0.8971464905958471 0.8738826159667554 1.0066411114471512 1.0986719926688209 1.1683912315803846 1.207625358494578 1.0 19.090123982860657 2.2544576186434577 2.9335893789453165 1.141266444509451 0.95362367233468 0.3636731030007273 0.09686108530453238 0.24492827977268938 4.354116407382899 0.03944895402998894 0.02915397971868559 179.66257448771617 -2.2544576186434577 -0.18764277217477088 (ac)ATSPQKS(ph)PSVPKS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7;Q9NVD7-2 Q9NVD7 PARVA Alpha-parvin 2 AT(0.05)S(0.046)PQKS(0.676)PS(0.426)VPKS(0.645)PT(0.157)PK;AT(0.031)S(0.028)PQKS(0.936)PS(0.055)VPKS(0.85)PT(0.099)PK;AT(0.003)S(0.003)PQKS(0.984)PS(0.026)VPKS(0.841)PT(0.143)PK 70.315 6.9758e-08 1001300000.0 2509450.0 1514500.0 1305970.0 1306420.0 1282750.0 2090730.0 1846090.0 1858780.0 3232820.0 1721560.0 True False 2495939.400026107 1564909.216965417 1489839.2243052667 1471812.6380497382 1446100.6090450776 1946202.7561490403 1756787.5739513487 1997491.602293588 2436134.82856862 1611688.5668983315 1.5486486975765437 0.9709749446054949 0.9243964714426424 0.9132115647393453 0.8972580923795189 1.2075551047026882 1.090029184318319 1.2393781548861689 1.5115419185835153 1.0 20.62014156232227 1.9556020794857667 1.7474133666163971 1.276373645978166 1.0444830998965087 0.10518630120134298 0.21695882080268933 0.6662860278206214 3.7832976897149058 0.13721564171128944 0.06585309220055527 90.28218878412856 -1.9556020794857667 -0.23189054608165738 (ac)AVPETRPNHTIYINNLNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVPETRPNHTIYINNLNEK 19 1 P09012;M0R221;M0R2B8;M0R268;M0QXK2;M0R0G9 P09012 SNRPA U1 small nuclear ribonucleoprotein A 0 ; 115.29 8.808499999999997e-39 1349670000.0 754800.0 724130.0 636190.0 684060.0 591780.0 765790.0 691240.0 661370.0 968460.0 819980.0 False True 750736.2406661635 748232.2293041704 725760.0221373911 770661.9258617475 667139.6752451357 712852.7397757593 657802.0804067684 710724.7877688119 729796.0096991366 767648.1743798027 0.9779691605111904 0.9747072347415939 0.9454331376789195 1.0039259540796532 0.8690695783704955 0.9286190778108557 0.8569056793995752 0.925847037079219 0.9506907383564775 1.0 19.550085726301006 3.2476096536536603 24.999838204769105 0.9146359761288266 0.9733033421527666 0.29059023274691675 0.040069320798893734 216.6487231422125 598533.3396258948 0.010537126701357839 0.014062797579813316 1768.5186891132303 -3.2476096536536603 0.05866736602393996 (ac)AVTLDKDAYYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTLDKDAYYR 11 1 Q9Y5B9;G3V5A4;G3V401;G3V2X0 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 72.23 0.0010015 195360000.0 522820.0 505270.0 425120.0 427780.0 356400.0 447470.0 474530.0 476610.0 657880.0 546320.0 False True 520005.19521076226 522087.6065078351 484973.2007907186 481936.9041387279 401785.4274516987 416537.4521310786 451575.1710193616 512177.0583765416 495754.2891403553 511453.38987191685 1.0167205956753695 1.0207921520249996 0.9482256064666427 0.9422890016613621 0.7855758421159702 0.814419183408662 0.882925365168563 1.0014149256197244 0.9693049238846709 1.0 18.964243243704345 4.054137860831968 2.257805923764197 0.9084500928987811 1.0218178898299668 0.2690891208255104 0.06815816298026856 0.44444186190305085 4.474746002232289 0.020630813557842 0.05768340500750053 11327.598852727817 -4.054137860831968 0.1133677969311857 (ac)AYHSFLVEPISCHAWNK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYHSFLVEPISCHAWNK 17 0 C9JEY1;C9K057;O15143;F8VXW2;C9JBJ7;C9JTT6;C9JM51;F8WEB3 C9JEY1 ARPC1B Actin-related protein 2/3 complex subunit 1B 0 ; 128.9 8.755099999999999e-36 1563280000.0 779070.0 1251790.0 1260550.0 1212050.0 1178380.0 1367760.0 1403420.0 1240810.0 1629350.0 1347890.0 False True 774875.573682815 1293455.0734269647 1438024.4831029845 1365495.4057257152 1328439.7081945352 1273209.970560718 1335531.2130149703 1333405.5429055125 1227818.5246714263 1261866.506213312 0.6140709574803678 1.0250332083925784 1.1396011194704727 1.082123504350218 1.0527577217189164 1.008989432948376 1.0583775751546936 1.0566930307920441 0.9730177626759751 1.0 20.26712786394666 4.735649880766626 5.0882367762253 1.051421770300148 0.5944508860052702 0.895535393626953 0.044080364200647135 0.04475747023848302 3.781158258860626 0.010577965444693806 0.07182223775141437 54406.38629553438 -4.735649880766626 -0.45697088429487787 (ac)AYHSGYGAHGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYHSGYGAHGSK 12 0 E9PIZ0;C9JST7;A6NGW1;O95070 E9PIZ0 YIF1A Protein YIF1A 0 70.41199999999998 7.762e-05 0.0 49045.0 104770.0 110390.0 113520.0 121850.0 129800.0 121190.0 83354.0 98356.0 114580.0 False True 48780.947169411775 108257.20611519765 125931.95247291925 127891.62036053203 137366.87523846657 120827.23151633404 115327.57670924177 89574.29874303573 74117.48170287698 107267.40630312676 0.4547602002379156 1.0092274051007986 1.1740001628924297 1.1922691595536798 1.2806021882386323 1.1264114205846332 1.075140908910744 0.8350560699669375 0.6909599500656194 1.0 16.710852247566084 1.7041557585924763 5.020430994181746 0.8195414143213672 1.066429988309074 0.1391233336006169 0.22442861182567975 0.2740154766043507 16.36547475253242 0.12183460315526934 0.06032640534452833 50.60061072451331 -1.7041557585924763 0.2468885739877068 (ac)DDDIAALVVDNGSGMCK ddPTM_BT-474_Trastuzumab_2h_R1 10 DDDIAALVVDNGSGMCK 17 0 C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7 C9JTX5;P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed 0 ;;;;;;;;; 179.19 4.904499999999999e-140 3347393000.0 3324374.0 3426811.0 3130945.0 3202450.0 3139027.0 3804084.0 3650516.0 3330903.0 4376057.0 3922600.0 False True 3306475.9397566705 3540870.332584007 3571754.8413382065 3607879.8416454038 3538763.481979299 3541116.6269305306 3473926.5947546405 3579471.895842719 3297636.388509572 3672256.3096931833 0.9003935621348081 0.964222002488668 0.9726322293763385 0.982469505770103 0.963648281477107 0.9642890714309619 0.9459924095126374 0.9747336770569218 0.8979864449562589 1.0 21.80823532628354 4.7393492061464 24.245227838365125 0.9628465530946961 0.9003935343120764 0.35102732520810853 0.02549120125182074 45.746821041147214 1406097.0245417906 0.0056421452194616 0.034105234423873386 54871.79990340029 -4.7393492061464 -0.062453018782619774 (ac)EEEIAALVIDNGSGMCK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEEIAALVIDNGSGMCK 17 0 P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;; 132.32 4.283499999999999e-58 407921000.0 456755.0 487126.0 428477.0 451838.0 409487.0 541631.0 499890.0 449915.0 616685.0 497503.0 False True 454295.88183025154 503339.69443611515 488802.83721115126 509040.6444720056 461632.7422303974 504189.3238322314 475708.41093475424 483489.94192207756 464711.2449056358 465751.93260625313 0.975403106301898 1.0807033942286155 1.0494918066703662 1.0929437085177889 0.9911558276252219 1.082527604364174 1.0213772131288574 1.0380846714184655 0.9977655751318221 1.0 18.82920222998198 1.3525323696446667 1.711448016778303 0.9965794028388317 1.0458835973829845 0.1688790431550412 0.03664088650498341 0.5502722423417523 2.900799992075361 0.030729961709967772 0.009434464162142556 22.518132468261847 -1.3525323696446667 0.0493041945441528 (ac)GDKKS(ph)PTRPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDKKSPTRPK 10 3 Q8IY57;Q8IY57-5;G3V1X5;A0A0B4J255;F8VRE5;G3V219;G3V212;Q8IY57-4 Q8IY57 YAF2 YY1-associated factor 2 1 GDKKS(0.87)PT(0.13)RPK;GDKKS(0.863)PT(0.137)RPK;GDKKS(0.881)PT(0.119)RPK 51.268 0.00012327 4431470000.0 4319800.0 2976530.0 2659440.0 2628670.0 2449930.0 3951470.0 4377300.0 3950120.0 7215700.0 4099950.0 True False 4296542.6767749 3075602.0016996157 3033866.0357331326 2961459.3524763957 2761914.0636272165 3678314.1796598504 4165553.2760901437 4244898.012702929 5437487.420426311 3838287.6808562065 1.1193904766972733 0.8012953320407556 0.7904217421911347 0.7715574231829813 0.7195693218625855 0.9583216490013925 1.0852634357935709 1.1059353455643064 1.4166440539478717 1.0 21.872031415352176 2.2038892832295147 1.8701990449423607 1.1829177438588203 0.8322327246181263 0.522396236109349 0.14111513349863716 0.26383898819888957 1.836084793346802 0.07177111556898921 0.04438128576299487 159.91502976067437 -2.2038892832295147 -0.35068501924069406 (ac)GDREQLLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDREQLLQR 9 1 Q04917;F8WEB6;A2IDB1 Q04917 YWHAH 14-3-3 protein eta 0 79.469 0.00013725 427600000.0 130750.0 132360.0 117900.0 153970.0 129890.0 184560.0 161800.0 162520.0 220390.0 153890.0 False True 130046.0565276907 136765.52258669047 134499.29519482897 173462.58621310015 146430.72158165285 171801.80160750862 153973.1158639766 174648.06765983804 166077.8375746988 144068.60844814256 0.9026675410313325 0.9493082779092654 0.9335780823012665 1.2040276371208092 1.0163957517113142 1.192499903053819 1.0687485464218887 1.2122562266762127 1.1527690824783556 1.0 17.136396490935937 3.7530721010396104 24.32862719673314 1.1301057854165224 0.9305969562704709 0.6003054285810729 0.07168057023373327 342.48676719161955 574179.4867429013 0.017212849545115826 0.030843240734881188 5663.333031974812 -3.7530721010396104 -0.1995088291460515 (ac)GDS(ph)DDEYDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDSDDEYDRR 10 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;A0A087X0F4 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 GDS(1)DDEYDRR;GDS(1)DDEYDRR;GDS(1)DDEYDRR;GDS(1)DDEYDRR 76.92699999999998 2.0579e-06 6551114000.0 17596.6 30138.2 18364.5 55484.5 33593.3 49012.4 46945.0 28213.2 26696.5 21742.100000000002 True False 17501.861860766057 31141.331768073378 20950.06197290449 62508.83201104601 37871.20763191115 45624.288150779474 44674.09100268464 30318.61224772675 20117.505289772424 20354.50056365169 0.8598521887596805 1.5299482132066855 1.0292594459584201 3.0710078989936975 1.860581521687648 2.2414840397633546 2.1948016293979706 1.489528674649409 0.9883566156222725 1.0 14.313060202197468 1.411287964953133 3.5117172157011436 0.9999023169519003 1.849800839963022 0.2354139488971051 0.5940060968925049 0.34626990484978964 7.324843426765319 0.4652648813151543 0.15822165313031833 25.78029988790218 -1.411287964953133 0.8498985230111216 (ac)GS(ph)ASPGLSSVS(ph)PSHLLLPPDTVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSASPGLSSVSPSHLLLPPDTVSR 24 0 O95238-2;O95238 O95238-2 SPDEF SAM pointed domain-containing Ets transcription factor 2 GS(0.485)AS(0.485)PGLS(0.136)S(0.136)VS(0.633)PS(0.125)HLLLPPDTVSR;GS(0.434)AS(0.434)PGLS(0.236)S(0.213)VS(0.563)PS(0.121)HLLLPPDTVSR 60.918 0.0053236 128099000.0 6281.1 6396.900000000001 7202.799999999999 8318.2 8332.5 10775.3 8752.5 8025.200000000001 8756.099999999999 9731.1 True False 6247.283255495814 6609.816949492294 8216.891632140072 9371.283267115741 9393.59448440313 10030.428873327852 8329.108137203059 8624.081175139883 6598.2764807287995 9110.052866786147 0.6857570803208451 0.7255519859374989 0.9019587210187985 1.0286749598657106 1.0311240364642373 1.1010286131156553 0.914276597402602 0.946655447695804 0.724285201986599 1.0 13.153243710855044 4.198785443601178 3.141884962371965 0.9658856279042914 0.6930401924070536 0.5376365834367794 0.09456362199579353 0.1838646730716948 3.6494982169326144 0.025037781141480486 0.07074957106539688 15804.67041334345 -4.198785443601178 -0.27284543549723783 (ac)GS(ph)ASPGLSSVSPSHLLLPPDTVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSASPGLSSVSPSHLLLPPDTVSR 24 0 O95238-2;O95238 O95238-2 SPDEF SAM pointed domain-containing Ets transcription factor 1 GS(0.491)AS(0.491)PGLS(0.004)S(0.005)VS(0.008)PS(0.001)HLLLPPDTVSR;GS(0.499)AS(0.499)PGLS(0.002)SVSPSHLLLPPDTVSR;GS(0.399)AS(0.399)PGLS(0.077)S(0.103)VS(0.02)PS(0.002)HLLLPPDTVSR;GS(0.5)AS(0.5)PGLS(0.001)SVSPSHLLLPPDTVSR 101.53 3.8286e-25 1177500000.0 8863.9 5823.5 10008.400000000001 19144.7 13871.3 19135.9 10631.3 10202.8 14968.5 16600.1 True False 8816.177747271868 6017.33167711991 11417.495725427712 21568.417057049683 15637.727833363486 17813.080274063304 10117.023403490073 10964.184744768625 11279.713742623886 15540.667405939377 0.5672972412949572 0.3871990513625038 0.7346850316778635 1.3878694198684545 1.0062455765179694 1.1462236343373162 0.6510031480130332 0.7055156936553639 0.7258191329873627 1.0 13.923760842275977 4.013438206485444 8.791674280646527 0.9243387283171043 0.496529008496557 0.43322446227490474 0.21343179253457206 0.18870630218700873 96.44044641629601 0.05961322666725256 0.12582017021851696 10314.263126855414 -4.013438206485444 -0.4278097198205473 (ac)GS(ph)PEDDLIGIPFPDHSSELLSCLNEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSPEDDLIGIPFPDHSSELLSCLNEQR 27 0 O15156 O15156 ZBTB7B Zinc finger and BTB domain-containing protein 7B 1 GS(1)PEDDLIGIPFPDHSSELLSCLNEQR;GS(1)PEDDLIGIPFPDHSSELLSCLNEQR;GS(0.999)PEDDLIGIPFPDHSSELLSCLNEQR 79.875 4.6743e-12 87943000.0 2814.7 3056.07 4973.1 5121.2 4295.5 3246.12 4437.93 5685.0 2384.96 3162.7 True False 2799.545967942569 3157.789442516675 5673.269253039902 5769.543394911531 4842.506463576795 3021.7233649445493 4223.250371361049 6109.243567845067 1797.2185648266886 2960.853778276303 0.945519832314164 1.066513134044404 1.9160923429128827 1.948608012068175 1.6355101690958609 1.02055811979465 1.4263623561375818 2.063338491305585 0.6069933537457434 1.0 11.53179752946174 -1.0538228162569427 10.489472379447223 0.9999949692996113 1.465942192826105 0.048264909260467004 0.46790455620630733 0.0 0.0 0.45387927627240654 0.10698037136408707 0.08834402534298787 1.0538228162569427 0.46594722352649365 (ac)GTRDDEYDYLFK ddPTM_BT-474_Trastuzumab_2h_R1 5 GTRDDEYDYLFK 12 1 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907;B4DQU5 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 ;;;; 91.867 2.0497e-10 3349990000.0 2847980.0 3471170.0 3189660.0 2876590.0 3466100.0 3809190.0 3287290.0 3000600.0 4151840.0 3285680.0 False True 2832646.7921203254 3586705.795083421 3638736.4029782745 3240765.9990565823 3907487.2898157444 3545869.661168759 3128271.224032707 3224520.0087380656 3128674.6638056934 3075985.089387825 0.920890937310776 1.1660348444007698 1.1829499484675483 1.053570126278327 1.2703206212853921 1.1527590538075232 1.0169981755845532 1.0482885693635795 1.017129333493731 1.0 21.552617079282438 2.2350968180894637 24.999619250897048 1.0268906078967583 1.132384192626414 0.2513383280065882 0.0868596778053501 125.88637086438668 908560.4119039625 0.03134353211490438 0.024086408041353216 171.82914064123955 -2.2350968180894637 0.10549358472965564 (ac)MDDREDLVYQAK ddPTM_BT-474_Trastuzumab_2h_R1 4 MDDREDLVYQAK 12 1 P62258;B4DJF2;I3L3T1;I3L0W5 P62258 YWHAE 14-3-3 protein epsilon 0 ;;; 86.13600000000002 8.5833e-07 4092750000.0 4123620.0 4205080.0 3659680.0 3796270.0 3627380.0 4695970.0 4363790.0 3954980.0 5203860.0 4391280.0 False True 4101418.8880972485 4345043.545775465 4174931.1334911953 4276877.392759665 4089305.341834294 4371348.647024339 4152696.806403352 4250120.690581508 3921438.431151469 4111024.750836046 0.9976633897091367 1.0569246864524051 1.0155451223304246 1.0403433819973693 0.9947167895310446 1.06332335900808 1.0101366588850702 1.0338348582594095 0.9538834399753926 1.0 21.971066627142086 1.2504103553427581 24.997732395464585 0.976941717667411 1.0273211097492494 0.40317775253835475 0.024134031427698054 163.22149580209822 344329.9805761799 0.014516291259351617 0.005210224960870803 17.799604613695944 -1.2504103553427581 0.05037939208183839 (ac)MDEFHPFIEALLPHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 MDEFHPFIEALLPHVR 16 0 P08651-3;P08651-2;P08651-4;Q14938-6;Q14938-4;Q12857-3;A0A1B0GW37;A0A1B0GU97 P08651-3;Q12857-3;A0A1B0GW37 NFIC;NFIX;NFIA Nuclear factor 1 C-type;Nuclear factor 1 X-type;Nuclear factor 1 A-type 0 53.828 7.3227e-05 31991000.0 2134.6 2482.7 1530.9 2398.0 2380.3 2756.4 2088.9 1125.7 2296.9 1794.8 False True 2123.107550776355 2565.3351686761566 1746.4374131786583 2701.5865541275202 2683.4170958565605 2565.856555867668 1987.8519266270744 1209.7054501887767 1730.8597718831431 1680.2543273944132 1.2635632095461873 1.5267540912417985 1.0393887310422083 1.607843830592537 1.5970303138678783 1.5270643937852948 1.1830660955414147 0.7199537775121692 1.0301177290030874 1.0 10.714463904035506 1.9904461061069463 4.8530352385564735 0.895820043077376 1.4268793198740397 0.6208680048513542 0.1787393755224569 0.11591748148422464 7.520480403209651 0.07672216758492488 0.0495668290380269 97.8241552097823 -1.9904461061069463 0.5310592767966638 (ac)MDEPS(ph)PLAQPLELNQHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDEPSPLAQPLELNQHSR 18 0 Q13085;A0A0C4DGT1;A0A087X2F8;A0A087X126 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR 131.06 2.1864e-15 983520000.0 17602.2 17930.0 7559.9 25265.4 47098.0 27750.5 16552.699999999997 31032.0 25719.0 28860.0 True False 17507.431710988276 18526.789211086118 8624.26820817124 28463.99704948019 53095.6511282831 25832.173252650446 15751.982663545392 33347.76541730312 19380.8970669435 27018.130091710893 0.6479882823704192 0.685716929639409 0.3192030010551007 1.0535146937579105 1.9651860046588767 0.9561051473571704 0.5830152793726486 1.234273626787153 0.7173293266838447 1.0 14.721640209625082 3.673026425529568 8.428683176524956 1.0936810978566196 0.5651015113004532 0.3054568901262078 0.3595236092498296 0.43747633871683667 52.77004307366027 0.09924948252519117 0.154153172971357 4710.05984840559 -3.673026425529568 -0.5285795865561664 (ac)MDFEDDYTHSACR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDFEDDYTHSACR 13 0 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-2;E2QRN4 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 ; 106.29 1.1231e-10 556970000.0 52828.0 47604.0 46231.0 44386.0 42095.0 60772.0 54951.0 50970.0 69686.0 45495.0 False True 52543.5799177426 49188.47036277433 52739.92295294442 50005.26304900088 47455.54873338735 56570.97468190028 52292.81019679464 54773.64022041569 52512.81904455943 42591.47014977087 1.2336643870938386 1.1548901737790556 1.2382743015793305 1.1740675509241585 1.1142031154715295 1.3282231038978265 1.2277765950062178 1.2860237044602312 1.2329421562557155 1.0 15.378276908479211 2.7526700495046343 24.721077256143218 1.2378678321838648 1.184029488885102 0.0 0.08855532537416144 1796.5543002935322 3147732.6441091304 0.02504452557861335 0.02646209201928488 565.8092582911828 -2.7526700495046343 -0.0538383432987628 (ac)MDFQHRPGGK ddPTM_BT-474_Trastuzumab_2h_R1 5 MDFQHRPGGK 10 1 Q15428;K7EMT0 Q15428 SF3A2 Splicing factor 3A subunit 2 0 ;;;; 91.867 1.4972e-05 3750430000.0 3405720.0 3961960.0 3721500.0 3712060.0 3575500.0 3995650.0 3969850.0 3843450.0 4890320.0 4094190.0 False True 3387383.981931065 4093831.4435446085 4245454.852142122 4182006.415393915 4030818.7313511414 3719440.120248385 3777813.1892002923 4130267.7556436434 3685166.1629307205 3832895.288987595 0.8837663767292204 1.0680780806370362 1.1076365337555303 1.091082876020475 1.0516381031676514 0.9703996169513992 0.9856291143810892 1.077584291830366 0.9614575627773293 1.0 21.87000315496018 2.7883737117441543 24.477597088113104 1.0087564118472279 1.0485224346562783 0.07687285005047895 0.06473006058458765 828.036266416601 406885.5257846928 0.02027737631979883 0.021507378342649725 614.2903765674882 -2.7883737117441543 0.039766022809050394 (ac)MDIRPNHTIYINNMNDK ddPTM_BT-474_Trastuzumab_2h_R1 2 MDIRPNHTIYINNMNDK 17 1 P08579 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B 0 ; 69.111 3.9127e-09 959690000.0 339070.0 301310.0 220527.0 290160.0 276500.0 331680.0 329240.0 298730.0 449470.0 335510.0 False True 337244.48479421815 311338.9212042587 251575.28474495417 326894.2262492248 311710.6360561017 308751.7422907376 313313.4033810609 321022.74952020333 338704.1410894316 314097.4645554375 1.073693750669214 0.9912175561331475 0.8009465631982257 1.0407413721466978 0.9924009940585989 0.9829806895376693 0.9975037647136493 1.0220482039693242 1.0783408951384612 1.0 18.260852771810452 1.8652066353098167 1.6485418449322573 1.0404305838239718 0.9748634104547306 0.103029918014516 0.06941983240060089 0.8086001957831173 4.139376900651244 0.04912344608781885 0.02156099967629484 73.31732906311281 -1.8652066353098167 -0.06556717336924123 (ac)MDKNELVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 MDKNELVQK 9 1 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 YWHAZ 14-3-3 protein zeta/delta 0 77.923 0.0091152 335280000.0 400080.0 350070.0 302790.0 295840.0 288150.0 399240.0 387010.0 368560.0 507970.0 391470.0 False True 397926.01373306627 361721.86832821614 345420.20010214037 333293.31366684125 324844.1945011417 371641.4785098705 368288.8477782293 396063.81870975875 382787.59994927025 366486.04944567126 1.0857876154766315 0.9870003752539526 0.9425193690854152 0.9094297427445446 0.8863753340474625 1.0140671904755914 1.0049191458591258 1.080706398807882 1.0444806849490067 1.0 18.48339875661962 2.303102087445706 2.519070210330638 1.0462409395370702 0.9599343446661802 0.25279971492075726 0.054983563836700396 0.35239197163885455 4.589225017468457 0.024159739769109418 0.017944644670754583 200.9565135583465 -2.303102087445706 -0.08630659487088999 (ac)MDLAAAAEPGAGS(ph)QHLEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDLAAAAEPGAGSQHLEVR 19 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR 94.632 1.3688e-21 68041000.0 54103.0 75924.0 91883.0 93037.0 92074.0 100369.0 87786.0 79641.0 66489.0 102226.0 True False 53811.71545940841 78451.08444297283 104819.32773864691 104815.47466070142 103799.07813464549 93430.72727321209 83539.45580491365 85584.21582880366 50103.6768569543 95701.84915991817 0.5622850125862127 0.8197447085048561 1.0952696176590422 1.095229356389492 1.084608908247915 0.9762687773889194 0.8729137058294337 0.8942796464234677 0.5235392763752229 1.0 16.546259180416133 -1.1225680113444394 6.664137076524788 1.0000001425755547 0.8996835575335203 0.0245398496437631 0.19468258596572288 4.212341117074698e-07 5.547509322544008e-08 0.19232313245520308 0.04533093287523889 0.07541052922726918 1.1225680113444394 -0.10031658504203445 (ac)MDLFGDLPEPERS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 MDLFGDLPEPERSPR 15 1 Q9H0C8;E9PC05;F8SNU7;F8SNU6 Q9H0C8 ILKAP;ILKAP3;ILKAP2 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR 149.97 3.307e-17 1060343000.0 39591.700000000004 51339.5 67505.2 56139.6 53887.299999999996 64874.7 84803.3 69085.5 75419.5 74612.0 True False 39378.542686251385 53048.30422211686 77009.34539428305 63246.867603877145 60749.528239949235 60390.064687617276 80701.04039893419 74241.01081906076 56833.37479452328 69850.198281453 0.5637570637606534 0.7594581766019485 1.1024928674358678 0.9054643960927852 0.8697116076201572 0.8645654010069198 1.1553444712319787 1.0628604162283906 0.8136465778596649 1.0 16.091976590520808 4.462216064368359 4.164710276080244 0.9779882365855014 0.5945433427860084 0.5993050084244385 0.10672317390120718 0.13034374158971776 5.187193672703064 0.027673981426523067 0.0997048789491023 28987.85393864749 -4.462216064368359 -0.383444893799493 (ac)MDLFGDLPEPERS(ph)PRPAAGK ddPTM_BT-474_Trastuzumab_2h_R1 11 MDLFGDLPEPERSPRPAAGK 20 2 Q9H0C8;E9PC05;F8SNU7;F8SNU6 Q9H0C8 ILKAP;ILKAP3;ILKAP2 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK 107.98 2.8741000000000004e-18 3004260000.0 1374833.0 1522265.0 1363135.0 1411386.0 1350838.0 1611839.0 1641825.0 1477242.0 2046564.0 1722942.0 True False 1367431.051886306 1572932.6702963756 1555052.5594181807 1590067.3228873345 1522859.2122558854 1500416.3637908811 1562403.6523694259 1587481.299322881 1542215.7247525998 1612982.36647514 0.8477656546702127 0.9751704066881492 0.9640852818598671 0.9857933700553206 0.9441263859466726 0.9302125026138692 0.9686427358680653 0.9841901141126629 0.9561268348660333 1.0 20.621299236002525 4.741089823528325 24.966793164166052 0.9665499962308339 0.8477656119771267 0.7718482367510267 0.01953720645076417 107.67877061977126 1062876.9411339734 0.004723751815473989 0.032352577286987705 55092.162971460064 -4.741089823528325 -0.11878438425370719 (ac)MDNYADLS(ph)DTELTTLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDNYADLSDTELTTLLR 17 0 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 MDNY(0.003)ADLS(0.486)DT(0.486)ELT(0.02)T(0.004)LLR;MDNYADLS(0.498)DT(0.498)ELT(0.003)TLLR 64.878 0.0040385 4025300.0 4421.6 6049.8 6705.2 6973.6 6010.2 5835.8 6661.39 5461.2 9884.8 8010.0 True False 4397.794596885945 6251.163935818676 7649.233877356812 7856.457044980686 6775.563344753638 5432.384881995553 6339.153116719006 5868.742475411695 7448.82348953393 7498.794942293984 0.5864668431032732 0.8336224665327839 1.0200617480835936 1.0476959438735218 0.9035536238681173 0.7244343822973924 0.8453562426364699 0.782624744452122 0.9933360689091244 1.0 12.872443057542595 -3.7729461726702507 0.0161148924744096 1.9684277127027587 3.697179892886676e-06 0.1252209626869446 0.13172061273809527 13446.848445322788 20.220329403976365 1501.5656105736637 1011.4699220526505 0.0001686762073110378 3.7729461726702507 -1.9684240155228658 (ac)MDRNPS(ph)PPPPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 MDRNPSPPPPGR 12 1 J3KND1;E9PRZ1;Q96ER3;E9PL53;E9PMD2 J3KND1 SAAL1 Protein SAAL1 1 MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR 77.74 0.00048423 1411690000.0 137105.7 153168.3 159004.7 193771.0 161503.4 157404.6 156622.0 153653.1 147249.7 171981.1 True False 136367.53814507535 158266.41427330734 181391.17966637207 218302.3887322117 182069.90068435078 146523.59049257278 149045.59550585732 165119.4745566324 110961.98447989079 161005.11895757253 0.8469764130978371 0.9829899527294726 1.1266174693127093 1.355872348317931 1.130832993777851 0.9100554779949831 0.9257196073693362 1.025554191231299 0.6891829601339016 1.0 17.296747032200948 2.734815001800045 24.547036424236982 0.9224445254751232 1.0997415193316378 0.2660964014565892 0.1469812090279736 381.39110442322396 2499454.99614171 0.04963448748544458 0.04851344867670412 543.0189702032447 -2.734815001800045 0.17729699385651454 (ac)MDSLDHMLTDPLELGPCGDGHGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 MDSLDHMLTDPLELGPCGDGHGTR 24 0 Q6P4R8-3;Q6P4R8;E9PQ59;E9PJG2;E9PJE1;E9PM88;E9PQB0;E9PJU3 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 0 57.147 7.7846e-05 14050000.0 0.0 1272.3 1814.2 2638.6 2993.7 2365.5 3355.2 0.0 1322.7 2894.8 False True 0.0 1314.6477363784093 2069.623590690916 2972.646489458246 3374.9299499499143 2201.9785527880463 3192.896157891311 0.0 996.7383082719452 2710.0513856370308 0.0 0.4851006675909893 0.7636842613611275 1.0968967249894006 1.2453379916840934 0.8125228047181269 1.1781681243438051 0.0 0.36779313984766 1.0 11.404104491629013 6.0918849446869325 9.037760636329025 0.684718609555569 0.5076160381810562 0.0 0.439046396221017 378848805.9459489 0.0 0.10629860010838513 0.0 1235620.0438735439 -6.0918849446869325 -0.1771025713745128 (ac)MDVAES(ph)PERDPHSPEDEEQPQGLSDDDILR ddPTM_BT-474_Trastuzumab_2h_R1 1 MDVAESPERDPHSPEDEEQPQGLSDDDILR 30 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 MDVAES(0.844)PERDPHS(0.155)PEDEEQPQGLSDDDILR 74.28399999999998 3.7126e-34 276710000.0 3661.5 5389.0 3443.3 4775.3 4849.5 3168.0 0.0 2573.6 5802.2 4021.1 True False 3641.7868908308915 5568.369607280708 3928.0867102998745 5379.852490377458 5467.055079761535 2949.003616669851 0.0 2765.6551004760004 4372.325555496698 3764.4699553630885 0.9674102686468741 1.4791908750254936 1.0434634243005945 1.4291128775547801 1.4522775170440243 0.7833781785051902 0.0 0.734673176640946 1.161471762915154 1.0 11.878231029611959 2.6293052326680617 5.485939293305872 0.6491585150130854 1.2793700494832188 0.39655947269540814 0.32629942647299387 0.20885557500886717 8.880913257130038 0.1073751047039171 0.1009313317352297 425.89763913362225 -2.6293052326680617 0.6302115344701333 (ac)MDVHDLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 MDVHDLFR 8 0 Q9Y2R4;A0A087X1P7;A0A087WTD6;A0A087X069 Q9Y2R4 DDX52 Probable ATP-dependent RNA helicase DDX52 0 43.808 0.061246 21319000.0 5542.6 9383.4 7956.4 10371.0 8638.7 7911.5 10106.0 6810.0 7246.9 8515.5 False True 5512.7592574407545 9695.72079661492 9076.591961731454 11683.96753663742 9738.787239413543 7364.596626667774 9617.134171330941 7318.196780479318 5460.998598484887 7972.033499513659 0.691512304580389 1.2162167654220741 1.1385541671751855 1.465619473042883 1.2216189558169401 0.9238040240444371 1.2063589762784668 0.9179836964967308 0.6850195246693381 1.0 12.960732057242556 1.5966538128987804 4.573041130278921 0.8306960709542404 1.1361195647549835 0.24757297227093 0.20519289885343173 0.20319930305836945 9.414247754631958 0.1174176924057488 0.0530564972448335 39.505158892516434 -1.5966538128987804 0.3054234938007432 (ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-4;Q9NQC3-2 Q9NQC3-5;Q9NQC3-2 RTN4 Reticulon-4 2 MEDLDQS(1)PLVSSS(0.004)DS(0.996)PPRPQPAFK;MEDLDQS(0.987)PLVS(0.018)S(0.037)S(0.16)DS(0.798)PPRPQPAFK 133.4 8.403299999999997e-25 83446000.0 110420.0 127974.0 120259.0 116910.0 136233.0 125303.0 103634.0 99001.0 116010.0 109091.0 True False 109825.51098881521 132233.5372280833 137190.4218900336 131710.79401294753 153581.46503374656 116641.09854153474 98620.82749967453 106388.95733689185 87420.88995435742 102128.71898249608 1.075363639953599 1.2947732875289164 1.343308946365486 1.2896548133098737 1.50380291228434 1.1420989091376534 0.9656522521992783 1.0417144011678627 0.855987334662844 1.0 16.64002908901256 2.4485622504811175 4.41925395965807 0.9803289298121461 1.3052361965775694 0.6832625078041437 0.10726787821606672 0.11919159378923812 5.489581773534919 0.037813004376091704 0.03220011230165307 280.9067987374402 -2.4485622504811175 0.32490726676542325 (ac)MEDLDQSPLVSSSDS(ph)PPRPQPAFK ddPTM_BT-474_Trastuzumab_2h_R1 11 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-4;Q9NQC3-2 Q9NQC3-5;Q9NQC3-2 RTN4 Reticulon-4 1 MEDLDQSPLVS(0.002)S(0.001)S(0.01)DS(0.987)PPRPQPAFK;MEDLDQSPLVSSS(0.001)DS(0.999)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.998)PPRPQPAFK;MEDLDQSPLVS(0.006)S(0.029)S(0.15)DS(0.814)PPRPQPAFK;MEDLDQSPLVS(0.005)S(0.013)S(0.044)DS(0.938)PPRPQPAFK;MEDLDQSPLVSS(0.001)S(0.003)DS(0.996)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.998)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.998)PPRPQPAFK;MEDLDQSPLVSSS(0.006)DS(0.994)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.998)PPRPQPAFK 152.14 1.517699999999999e-61 9922039000.0 4757461.0 5157620.0 5145581.0 4527879.0 5798415.0 6497081.0 5103078.0 5027940.0 5873046.0 5931901.0 True False 4731847.358579612 5329288.26385287 5870034.078608182 5101108.0171461115 6536808.7803516835 6047953.082953585 4856222.621488939 5403150.41416199 4425712.508084463 5553321.999624042 0.8520750928723306 0.9596577083435215 1.0570311030056572 0.9185687445265113 1.177098821353097 1.089069404468718 0.8744716445071443 0.9729582427469148 0.7969486567470934 1.0 22.404919619817573 2.2248855558998133 24.990636373215626 0.9144833595532483 1.0124026909879833 0.1883819959679498 0.09921383704635378 414.11043604299437 756765.5140136967 0.03764004766408263 0.027950322795199902 167.83616825397056 -2.2248855558998133 0.09791933143473497 (ac)MEDMNEYSNIEEFAEGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEDMNEYSNIEEFAEGSK 18 0 O14979-2;O14979-3;A0A087WU03 O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 ; 138.02 7.0745e-30 60580000.0 122536.0 118593.0 102989.0 105353.0 102480.0 131333.0 121556.0 118570.0 156676.0 135778.0 False True 121876.27979102952 122540.29631401769 117488.95600356437 118690.67899791361 115530.2205534514 122254.25883462782 115675.87189098605 127418.2954862603 118065.2991508396 127112.53179460567 0.958806170173393 0.9640300180003022 0.924290896773329 0.933744905574688 0.908881436962726 0.9617797482955648 0.9100272825806073 1.00240545670311 0.9288250142135079 1.0 16.955746744486106 1.7382137437312877 24.999999622572943 0.9752341208946533 0.9375924536864642 0.3199837788487506 0.02648645808087008 0.07658028859466888 4165.938128720763 0.01160904776752478 0.00643784728645162 54.72852502433091 -1.7382137437312877 -0.03764166720818918 (ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 MEDS(0.499)MDMDMS(0.499)PLRPQNY(0.002)LFGCELK;MEDS(0.499)MDMDMS(0.499)PLRPQNY(0.002)LFGCELK 42.612 0.053961 109528000.0 21310.2 22785.9 20817.5 19703.5 20237.8 24485.2 21218.2 23469.8 29890.8 28743.0 True False 21195.46825098579 23544.314907132575 23748.42305104626 22197.961079754616 22814.963871161573 22792.59575596106 20191.79460460461 25221.235653229567 22524.612856199485 26908.597131879633 0.7876838821104767 0.8749737041935469 0.8825589433241245 0.8249393668113546 0.8478689453539673 0.8470376825760942 0.7503845148687676 0.937292848438725 0.8370786758523997 1.0 14.71577955820384 0.3466417009823106 0.781194617803181 1.0016056359125833 0.8402863208712088 0.48625793671670514 0.048407403733102344 1.952949607244349 1.6330613002997043 0.05425051412908721 0.015925857439074348 2.221476385354235 -0.3466417009823106 -0.16131931504137453 (ac)MEDSMDMDMS(ph)PLRPQNYLFGCELK ddPTM_BT-474_Trastuzumab_2h_R1 39 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 MEDS(0.019)MDMDMS(0.961)PLRPQNY(0.02)LFGCELK;MEDS(0.011)MDMDMS(0.989)PLRPQNYLFGCELK;MEDS(0.033)MDMDMS(0.962)PLRPQNY(0.005)LFGCELK;MEDS(0.001)MDMDMS(0.998)PLRPQNY(0.001)LFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDS(0.019)MDMDMS(0.973)PLRPQNY(0.008)LFGCELK;MEDS(0.006)MDMDMS(0.994)PLRPQNY(0.001)LFGCELK;MEDS(0.038)MDMDMS(0.962)PLRPQNYLFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDSMDMDMS(0.998)PLRPQNY(0.001)LFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDS(0.052)MDMDMS(0.926)PLRPQNY(0.023)LFGCELK;MEDS(0.005)MDMDMS(0.978)PLRPQNY(0.017)LFGCELK;MEDS(0.089)MDMDMS(0.908)PLRPQNY(0.003)LFGCELK;MEDS(0.005)MDMDMS(0.995)PLRPQNYLFGCELK;MEDS(0.002)MDMDMS(0.998)PLRPQNYLFGCELK;MEDS(0.283)MDMDMS(0.717)PLRPQNYLFGCELK;MEDS(0.023)MDMDMS(0.973)PLRPQNY(0.004)LFGCELK;MEDS(0.006)MDMDMS(0.966)PLRPQNY(0.028)LFGCELK;MEDS(0.118)MDMDMS(0.874)PLRPQNY(0.008)LFGCELK;MEDS(0.003)MDMDMS(0.997)PLRPQNYLFGCELK;MEDS(0.131)MDMDMS(0.855)PLRPQNY(0.014)LFGCELK;MEDSMDMDMS(0.998)PLRPQNY(0.002)LFGCELK;MEDS(0.076)MDMDMS(0.924)PLRPQNYLFGCELK;MEDS(0.002)MDMDMS(0.99)PLRPQNY(0.008)LFGCELK;MEDS(0.069)MDMDMS(0.931)PLRPQNYLFGCELK;MEDS(0.167)MDMDMS(0.717)PLRPQNY(0.116)LFGCELK;MEDS(0.222)MDMDMS(0.778)PLRPQNYLFGCELK;MEDS(0.091)MDMDMS(0.909)PLRPQNYLFGCELK;MEDS(0.223)MDMDMS(0.751)PLRPQNY(0.026)LFGCELK;MEDS(0.018)MDMDMS(0.982)PLRPQNYLFGCELK;MEDS(0.105)MDMDMS(0.883)PLRPQNY(0.013)LFGCELK;MEDS(0.062)MDMDMS(0.872)PLRPQNY(0.066)LFGCELK;MEDS(0.008)MDMDMS(0.992)PLRPQNYLFGCELK;MEDS(0.002)MDMDMS(0.995)PLRPQNY(0.003)LFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK 130.51 3.103199999999999e-53 12139117800.0 5453779.0 5304146.0 4803065.0 4969427.0 4703336.0 5621092.0 5505442.0 5410005.0 7528124.0 5904739.0 True False 5424416.459835804 5480691.293186029 5479294.803010614 5598555.948673168 5302277.960743433 5232519.1406672895 5239122.737629193 5813727.044548754 5672918.711893429 5527893.5017186105 0.9812809270202771 0.9914610857611663 0.9912084596613724 1.012782888623413 0.959185982706607 0.9465665608500797 0.947761156397163 1.0517074981168284 1.0262351671807228 1.0 22.398298390907357 1.7303967924942945 12.905149302640167 1.0288185111888217 0.9766173920048347 0.5048445090580207 0.022728589740985166 0.07419374680093464 64.94782015656989 0.011482515194735482 0.006304093580154135 53.7522678868871 -1.7303967924942945 -0.052201119183987066 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 MEFDLGAALEPTSQKPGVGAGHGGDPK 27 1 Q9GZP8-2;Q9GZP8 Q9GZP8-2 IMUP Immortalization up-regulated protein 0 ;;; 82.6 5.8959e-11 706409000.0 610909.0 497859.0 483555.0 411067.0 408660.0 596055.0 632836.0 551782.0 800801.0 540024.0 False True 607619.9338223711 514429.9358528792 551635.3408645941 463108.0400523507 460700.4286824108 554851.120812547 602223.3050117148 592958.7747322223 603454.3237336373 505559.2059821928 1.2018769050835425 1.0175463719495572 1.0911389493795989 0.9160312671047725 0.9112689932870848 1.0974997868639156 1.1912023317659193 1.1728770195772242 1.1936372962712751 1.0 18.947520530314193 2.482651810005459 20.190908720936886 1.1556031420314419 1.022353604444794 0.23501450436236115 0.09372939920491247 24.56517796157293 89690.11028032059 0.03192574888238281 0.02764804239773566 303.844801241435 -2.482651810005459 -0.13324953758664781 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPKLS(ph)PHK ddPTM_BT-474_Trastuzumab_2h_R1 5 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHK 32 2 Q9GZP8-2;Q9GZP8 Q9GZP8-2 IMUP Immortalization up-regulated protein 1 MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHK;MEFDLGAALEPT(0.011)S(0.038)QKPGVGAGHGGDPKLS(0.952)PHK;MEFDLGAALEPTS(0.001)QKPGVGAGHGGDPKLS(0.998)PHK;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHK;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(0.999)PHK 106.41 4.007399999999999e-27 8179480000.0 4784120.0 3189290.0 3100060.0 2870840.0 2984242.0 4561400.0 4882240.0 3743180.0 7322720.0 4581760.0 True False 4758362.829485703 3295443.5896834796 3536521.5017954367 3234288.0496461396 3364267.5297118686 4246081.1543806335 4646067.3992320215 4022515.099082903 5518133.775420842 4289348.154157917 1.1093440444728513 0.7682854063708987 0.8244892637981085 0.754027869365408 0.7843307208464033 0.9899129195807195 1.0831639755631204 0.9377917003970971 1.2864737431191708 1.0 22.03232698949261 2.5688983457001813 4.183791211288761 1.056271699201834 0.8379548135782691 0.41845374355185916 0.12647564328349456 0.23202489579870797 7.217176058722372 0.04166741283172829 0.03850176348344365 370.5939675612878 -2.5688983457001813 -0.21831688562356488 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPKLS(ph)PHKVQGR ddPTM_BT-474_Trastuzumab_2h_R1 5 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGR 36 3 Q9GZP8-2;Q9GZP8 Q9GZP8-2 IMUP Immortalization up-regulated protein 1 MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(0.999)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(0.999)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR 109.01 9.2134e-24 15785000000.0 4800050.0 4033140.0 3810240.0 3970240.0 3877710.0 5431580.0 5867900.0 4258790.0 10027330.0 5777900.0 True False 4774207.064135687 4167380.6268153833 4346688.672800218 4472871.9769221265 4371513.383512131 5056107.659164017 5584047.259445172 4576602.53549743 7556228.880838075 5409149.475290934 0.8826169596429768 0.7704317741360325 0.8035808018720779 0.8269085550980362 0.8081701944975382 0.9347324717611121 1.0323336940406571 0.8460854255190046 1.3969347520076913 1.0 22.36697033449563 1.9073145271982934 0.9438117845315728 1.1254388392061032 0.8154692941899151 0.4680736462607721 0.1283342504052262 0.4993937614378223 0.8194721766562123 0.10392964761501645 0.047108205846628524 80.78198623033641 -1.9073145271982934 -0.3099695450161881 (ac)MEGHDPKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEGHDPKEPEQLR 13 1 P51991-2 P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 70.438 0.00025609 2333100000.0 1165340.0 1108460.0 1093490.0 1238490.0 1175810.0 1259430.0 1352270.0 1154010.0 1822460.0 1373160.0 False True 1159065.9389214462 1145354.4210217805 1247443.8872145335 1395282.7070147586 1325542.4339281172 1172368.568479326 1286855.5339269452 1240128.0861440448 1373339.1527128518 1285523.7531785762 0.9016293445030079 0.8909632499514581 0.9703779367204326 1.0853807279443832 1.031130253836688 0.9119773676530959 1.0010359829953168 0.9646870258738616 1.0683109894446865 1.0 20.293924837042486 4.131224095024098 4.3540728727452285 1.0032056541618357 0.8964676469581436 0.4717937369012273 0.04671741634409631 0.1873774438494175 6.172556935277982 0.012185429019942627 0.028597907916172918 13527.704097742111 -4.131224095024098 -0.10673800720369209 (ac)MEGHDPKEPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 MEGHDPKEPEQLRK 14 2 P51991-2 P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 67.93 0.0020946 635820000.0 292950.0 329330.0 250300.0 295810.0 255760.0 334780.0 330210.0 283110.0 489870.0 368540.0 False True 291372.7897498047 340291.54996581096 285540.064353399 333259.51566991716 288329.5199917126 311637.4465873523 314236.4807753012 304237.1058034509 369148.1024216968 345019.4616770317 0.8445111714380769 0.9862966810966551 0.8276056746639103 0.9659151227297349 0.8356905972498855 0.9032459939290964 0.9107790014160244 0.8817969407425583 1.0699341440838825 1.0 18.3963182174089 1.2437697432057413 24.999788183214292 1.034967094821392 0.8960981624557611 0.5395764510110694 0.05189242963497199 77.54691928733591 372179.7644732964 0.032808631443293226 0.011171353834681793 17.529508656577683 -1.2437697432057413 -0.13886893236563091 (ac)MEGLDDGPDFLSEEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEGLDDGPDFLSEEDR 16 0 G3V5X9;Q9UNH7;G3V2U1;H0YJF8;G3V4Z5 G3V5X9 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed 0 ; 101.39 5.959400000000001e-26 88253000.0 139202.0 181139.0 176565.0 158776.0 162046.0 183650.0 171106.0 181949.0 218290.0 202337.0 False True 138452.55189879626 187168.10211416212 201423.81726950794 178877.02532033005 182681.59757810866 170954.70776559916 162828.94909160415 195526.95829830103 164495.35443614068 189423.67943057895 0.7309147003954019 0.98809242158532 1.063350779981691 0.9443224092048423 0.9644073968326585 0.9024991399148257 0.8596018701625877 1.032220252959234 0.8683991089742603 1.0 17.53125716459743 (ac)MELDLS(ph)PPHLSSSPEDLCPAPGTPPGTPRPPDTPLPEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 MELDLSPPHLSSSPEDLCPAPGTPPGTPRPPDTPLPEEVKR 41 2 Q14451;Q14451-4;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 MELDLS(0.916)PPHLS(0.028)S(0.028)S(0.028)PEDLCPAPGT(0.001)PPGTPRPPDTPLPEEVKR;MELDLS(0.945)PPHLS(0.033)S(0.011)S(0.011)PEDLCPAPGTPPGTPRPPDTPLPEEVKR 83.99799999999998 2.9506e-10 421290000.0 120756.0 155552.0 160101.0 177561.0 185411.0 211899.0 188308.0 172750.0 211772.0 197302.0 True False 120105.86311325288 160729.4542868305 182641.8291771613 200040.2043942606 209021.9918329038 197250.9208865922 179198.82263358298 185641.48220672546 159583.6281994152 184710.0174412593 0.650240115707035 0.8701718321148717 0.9888030530625893 1.082995969386861 1.1316223923771547 1.0678950910137894 0.9701629890786571 1.0050428492096395 0.8639684539587319 1.0 17.494902585050216 4.616937064322247 1.9136980998025288 1.0209779352992885 0.5887561421634772 0.7313778632593599 0.06835352369750437 0.3215289933351512 1.509079752213929 0.019045785851923937 0.22585119314158691 41393.96845057874 -4.616937064322247 -0.4322217931358113 (ac)MELDLSPPHLS(ph)SSPEDLCPAPGT(ph)PPGTPRPPDTPLPEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 MELDLSPPHLSSSPEDLCPAPGTPPGTPRPPDTPLPEEVKR 41 2 Q14451;Q14451-4;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 MELDLS(0.108)PPHLS(0.301)S(0.301)S(0.301)PEDLCPAPGT(0.83)PPGT(0.152)PRPPDT(0.008)PLPEEVKR 42.06399999999999 0.0090507 735740000.0 14439.0 23310.0 28390.0 26153.0 21179.0 30027.0 23827.0 25343.0 27083.0 32081.0 True False 14361.262028323717 24085.85925880744 32387.065229696353 29463.967118472512 23876.020112232083 27951.30416595504 22674.396982020822 27234.223349146447 20408.75754360709 30033.56311407405 0.4781737675871657 0.8019647608019091 1.0783624009806356 0.9810346846480357 0.7949779392323757 0.9306689339453286 0.7549685961635153 0.9067929517954597 0.679531678145885 1.0 14.874288022678439 4.699013792670651 3.862316093444238 0.885357232744594 0.45317127895957854 0.5364860189484317 0.11440137036976426 0.16423770405903737 4.670975730799498 0.02712221741042888 0.18481743958311211 50005.04157248598 -4.699013792670651 -0.43218595378501545 (ac)MELDLSPPHLSSS(ph)PEDLCPAPGT(ph)PPGTPRPPDTPLPEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 MELDLSPPHLSSSPEDLCPAPGTPPGTPRPPDTPLPEEVKR 41 2 Q14451;Q14451-4;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 MELDLS(0.056)PPHLS(0.288)S(0.314)S(0.342)PEDLCPAPGT(0.597)PPGT(0.389)PRPPDT(0.014)PLPEEVKR;MELDLS(0.086)PPHLS(0.254)S(0.313)S(0.347)PEDLCPAPGT(0.991)PPGT(0.009)PRPPDTPLPEEVKR 108.74 7.5647e-28 818550000.0 99231.0 155016.0 147084.0 160540.0 158473.0 200271.0 194706.0 162467.0 187566.0 168466.0 True False 98696.75132160065 160175.6138508491 167792.14872295386 180864.34753946288 178653.5972069388 186426.73715722456 185287.3269308493 174591.11253070988 141342.87255563316 157714.3556490012 0.6257943413930798 1.0156057968960386 1.063899021953215 1.1467843037826106 1.1327668712957153 1.1820530628938037 1.1748285447344609 1.1070083748068469 0.8961953525029558 1.0 17.266954459111922 4.8468707200202195 1.9585156734224485 1.1046764428452558 0.38294500274007903 0.7308188705897364 0.08326572641573017 0.5340710747937094 1.718625545481805 0.02122350485916174 0.7627435030435498 70286.30617606666 -4.8468707200202195 -0.7217314401051768 (ac)MELDLSPPHLSSSPEDLCPAPGT(ph)PPGT(ph)PRPPDTPLPEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 MELDLSPPHLSSSPEDLCPAPGTPPGTPRPPDTPLPEEVKR 41 2 Q14451;Q14451-4;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 MELDLS(0.002)PPHLS(0.008)S(0.008)S(0.009)PEDLCPAPGT(0.975)PPGT(0.99)PRPPDT(0.008)PLPEEVKR 80.859 4.7655e-14 336950000.0 19610.0 31944.0 31767.0 31772.0 34300.0 38489.0 31089.0 37026.0 36367.0 35585.0 True False 19504.421938875825 33007.23672944421 36239.51747628613 35794.33194234343 38667.90168797208 35828.34602336042 29585.106298486804 39789.06813421837 27404.840142833484 33313.93483414876 0.5854733773112456 0.9907936992063103 1.0878185857270297 1.0744552428448686 1.1607125330729526 1.0754762594610783 0.8880700057130543 1.194367111909945 0.8226239343766111 1.0 15.02383814576369 4.734921747576963 3.508364366447134 1.0511063853956706 0.5310358741272354 0.6076665875309898 0.10794984454692598 0.17358985358368242 3.7610863060219026 0.024534009339617375 0.23831886771803676 54315.24559105171 -4.734921747576963 -0.5200705112684352 (ac)MELDLSPPHLSSSPEDLCPAPGT(ph)PPGTPRPPDTPLPEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 12 MELDLSPPHLSSSPEDLCPAPGTPPGTPRPPDTPLPEEVKR 41 2 Q14451;Q14451-4;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 MELDLSPPHLS(0.001)S(0.001)S(0.001)PEDLCPAPGT(0.95)PPGT(0.047)PRPPDT(0.001)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.781)PPGT(0.199)PRPPDT(0.02)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.732)PPGT(0.265)PRPPDT(0.003)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.951)PPGT(0.048)PRPPDT(0.001)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.99)PPGT(0.01)PRPPDTPLPEEVKR;MELDLSPPHLS(0.001)S(0.001)S(0.001)PEDLCPAPGT(0.782)PPGT(0.196)PRPPDT(0.018)PLPEEVKR;MELDLS(0.019)PPHLS(0.05)S(0.05)S(0.05)PEDLCPAPGT(0.8)PPGT(0.026)PRPPDT(0.004)PLPEEVKR;MELDLSPPHLS(0.003)S(0.003)S(0.003)PEDLCPAPGT(0.8)PPGT(0.186)PRPPDT(0.003)PLPEEVKR;MELDLS(0.006)PPHLS(0.006)S(0.006)S(0.006)PEDLCPAPGT(0.944)PPGT(0.03)PRPPDT(0.002)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.861)PPGT(0.138)PRPPDT(0.001)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.945)PPGT(0.054)PRPPDT(0.001)PLPEEVKR;MELDLSPPHLSSSPEDLCPAPGT(0.96)PPGT(0.039)PRPPDT(0.001)PLPEEVKR 160.75 1.7737e-67 12501270000.0 1153814.0 2310483.0 2277726.0 2494477.0 2332901.0 2804895.0 2783786.0 2596904.0 2366789.0 2668036.0 True False 1147601.9936247868 2387386.0299385325 2598410.022450698 2810277.5324355075 2629982.114162441 2610999.2106626225 2649123.6360847675 2790698.1632913146 1783525.564297761 2497759.658259459 0.4594525297219681 0.955810949241674 1.0402962566307827 1.125119273642935 1.052936420630286 1.0453364486165468 1.0605998969215418 1.117280501373774 0.7140501122276091 1.0 21.25220323261159 4.745368841565158 3.111533814174528 1.035089168375368 0.36627354282473695 0.6968876701425029 0.10970597176411845 0.18902228137867333 2.7639447444308334 0.025686379344822412 0.31261591951173273 55637.65812323744 -4.745368841565158 -0.668815625550631 (ac)MENGYTYEDYKNTAEWLLSHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 MENGYTYEDYKNTAEWLLSHTK 22 1 P00491;G3V2H3 P00491 PNP Purine nucleoside phosphorylase 0 ; 144.92 2.424599999999999e-55 770940000.0 398290.0 410050.0 363240.0 367460.0 337730.0 472290.0 493620.0 457120.0 695090.0 459890.0 False True 396145.65089417895 423698.2663695409 414381.03466132126 413980.3983234772 380737.91361745854 439641.7039510738 469741.7147884798 491232.6156083263 523794.38322881 430539.4264683617 0.920114689945335 0.9841102587167507 0.9624694259952338 0.9615388809319618 0.8843276369381171 1.0211415654946552 1.0910538870776307 1.1409701072856904 1.2166002717228526 1.0 18.71578583230494 2.317771620936357 2.511636371475692 1.1303204357642276 0.9470752458280493 0.661518613735611 0.05673698467744504 0.15456908791236487 2.000140606630519 0.022302771968779646 0.01674896967949177 207.86033406712892 -2.317771620936357 -0.18324518993617833 (ac)MEPAPARS(ph)PRPQQDPARPQEPTMPPPETPSEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEPAPARSPRPQQDPARPQEPTMPPPETPSEGR 33 3 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;P29590-14;P29590-10;P29590-12;P29590-13;P29590-11;H3BT57 P29590-2;P29590-12 PML Protein PML 1 MEPAPARS(0.988)PRPQQDPARPQEPT(0.012)MPPPETPSEGR 48.69300000000001 4.2188e-06 614230000.0 0.0 5393.1 0.0 0.0 0.0 5199.1 5357.1 0.0 6135.2 0.0 True False 0.0 5572.606073302202 0.0 0.0 0.0 4839.69845436497 5097.956606890662 0.0 4623.262167468089 0.0 0.0 (ac)MERPEEGKQS(ph)PPPQPWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MERPEEGKQSPPPQPWGR 18 2 F5GWH4;Q96EP1-2;Q96EP1-4;Q96EP1;Q96EP1-5;Q96EP1-3 F5GWH4 CHFR E3 ubiquitin-protein ligase CHFR 1 MERPEEGKQS(1)PPPQPWGR;MERPEEGKQS(1)PPPQPWGR 52.03 3.3649e-05 408610000.0 516650.0 494610.0 438280.0 401650.0 450760.0 581320.0 514200.0 428200.0 607750.0 547300.0 True False 513868.4138052107 511072.7948519415 499986.01440194837 452498.84881789767 508161.6141361609 541134.7166800873 489326.18156524526 460154.4583555426 457978.1559327699 512370.8454328955 1.002922821205898 0.9974665799341934 0.9758283845746856 0.8831471440097011 0.9917847954577151 1.0561387742951875 0.9550234677225241 0.8980886841185588 0.8938411699553865 1.0 18.966828861228734 1.9963855549711862 24.995600706472324 0.9211288653605111 0.9825522754852277 0.1930428960538103 0.04853897698393338 213.54565102362403 1476774.7494496568 0.019057383748312687 0.013777562688839479 99.1711969442255 -1.9963855549711862 0.06142341012471664 (ac)MESYHKPDQQK ddPTM_BT-474_Trastuzumab_2h_R1 9 MESYHKPDQQK 11 1 P29401;P29401-2;E9PFF2;F8W888;F8WAX4 P29401 TKT Transketolase 0 ;;;;;;;; 118.28 1.5629e-07 9415490000.0 5637570.0 6592360.0 7198770.0 6116640.0 4577130.0 6960220.0 7819600.0 6590000.0 11157780.0 7507980.0 False True 5607217.949512907 6811782.717434231 8212294.2431694595 6891005.996846775 5160000.374725011 6479076.373995529 7441336.0742271375 7081779.263341956 8408094.62559201 7028814.288494934 0.7977473467596153 0.9691225913571297 1.1683754764458205 0.9803938066945758 0.7341210285170177 0.9217879585466868 1.058690096053247 1.007535406780304 1.196232291889507 1.0 22.744849906646884 2.234462643742511 23.957650315800922 1.0596826853509118 0.9348480598594273 0.2393984010575121 0.11915153042889397 108.66128597833506 635244.8060985127 0.04652379537020891 0.03563989664553142 171.57841189525564 -2.234462643742511 -0.1248346254914845 (ac)METMAS(ph)PGKDNYR ddPTM_BT-474_Trastuzumab_2h_R1 4 METMASPGKDNYR 13 1 O60684;S4R3E5 O60684 KPNA6 Importin subunit alpha-7 1 MET(0.003)MAS(0.997)PGKDNYR;MET(0.002)MAS(0.998)PGKDNYR;METMAS(1)PGKDNYR;METMAS(1)PGKDNYR 94.122 5.6634e-08 1956200000.0 1514440.0 1234760.0 1067450.0 1142780.0 1213870.0 1499660.0 1540470.0 1438810.0 2082700.0 1584460.0 True False 1506286.4233101024 1275858.240171818 1217737.6815582723 1287455.8308281265 1368449.1493288246 1395992.0340199184 1465951.5809331273 1546181.3083291417 1569446.4917501942 1483338.4062755455 1.015470520373147 0.860126209079504 0.8209439440160123 0.8679447827827417 0.9225468332373381 0.9411150066053089 0.9882785847997598 1.0423658564948681 1.058050196172601 1.0 20.50041633863445 2.312337936570187 1.430879960278989 1.038913938845611 0.8870520680740608 0.5908374103495085 0.04984739787845942 0.2746887538655944 1.1191309538965812 0.028369188511543984 0.01799460084969522 205.27588660850728 -2.312337936570187 -0.15186187077155022 (ac)MEVAEPS(ph)SPTEEEEEEEEHSAEPRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 MEVAEPS(0.455)S(0.455)PT(0.089)EEEEEEEEHSAEPRPR 102.51 5.5558e-07 3541400000.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 True False 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (ac)MEVAEPSS(ph)PTEEEEEEEEHSAEPRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 MEVAEPS(0.044)S(0.53)PT(0.425)EEEEEEEEHS(0.001)AEPRPR;MEVAEPS(0.007)S(0.843)PT(0.15)EEEEEEEEHSAEPRPR;MEVAEPS(0.046)S(0.81)PT(0.144)EEEEEEEEHSAEPRPR 118.68 2.5983e-12 5881610000.0 6672.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 True False 6636.277616551108 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (ac)MEVKPPPGRPQPDSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 MEVKPPPGRPQPDSGR 16 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;; 79.652 7.965800000000001e-06 8540270000.0 3130510.0 3283040.0 3210880.0 2871850.0 2919310.0 3347420.0 3307930.0 3175410.0 3971860.0 3379860.0 False True 3113655.6819923595 3392314.001760415 3662943.994530731 3235425.9155425867 3291066.82439399 3116020.7343790964 3147912.788380248 3412375.2186052618 2993048.323197257 3164154.4411562723 0.9840403620926104 1.0721075929911836 1.1576375498258507 1.022524650964973 1.0401094148841041 0.9847878137201209 0.9948669848207254 1.0784477439597677 0.945923588389545 1.0 21.593388588241233 3.511695505275433 24.854511486094808 1.015343656564518 1.0744688685802342 0.22979853272017858 0.0510910127705777 871.8598111773439 626754.5924650291 0.013602591476163665 0.02106100656350044 3248.594504335391 -3.511695505275433 0.05912521201571619 (ac)MEVKPPPGRPQPDSGRR ddPTM_BT-474_Trastuzumab_2h_R1 6 MEVKPPPGRPQPDSGRR 17 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;;; 66.335 0.00023451 3740460000.0 1592709.0 1837820.0 1663106.0 1661547.0 1682682.0 1866300.0 1857184.0 1730980.0 2323390.0 1949110.0 False True 1584134.0317106042 1898990.7277143488 1897256.8688235069 1871898.6798377484 1896961.5786623969 1737287.073797644 1767344.9147881558 1860154.5173383378 1750821.6663309576 1824716.1310829753 0.8681536841406752 1.0407047405161542 1.039754533050288 1.0258574733631418 1.039592705050809 0.9520862145097376 0.9685588265936086 1.0194213147194187 0.9595035833282402 1.0 20.799240612422178 4.747707379821955 24.674140472987887 1.0057388419802504 0.8681535978525443 0.6151627686458669 0.0324797293527833 732.8331197671636 1976827.2747411658 0.008104618321873092 0.10239611927187853 55938.05734493193 -4.747707379821955 -0.13758524412770612 (ac)MFCVT(ph)PPELETK ddPTM_BT-474_Trastuzumab_2h_R1 2 MFCVTPPELETK 12 0 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;C9JJS3;C9JDU5;I3L1T1;I3L275;E7EW35;I3L164;I3L331;I3L2J4;I3L3B8;C9JDH0 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 MFCVT(1)PPELETK;MFCVT(0.999)PPELET(0.001)K 81.865 0.00031403 41542000.0 170836.0 159072.0 142564.0 148844.0 131362.0 179456.0 175636.0 152804.0 228580.0 182454.0 True False 169916.23795766404 164366.6153589454 162635.7720114981 167687.63513868066 148090.17205642548 167050.62911398485 167139.81568532382 164207.01040298984 172249.5218150761 170809.62951327156 0.9947696651637657 0.9622795613298514 0.9521463893747374 0.9817223748831542 0.8669895981767186 0.9779930416686804 0.9785151818524224 0.9613451587647831 1.008429807534315 1.0 17.382029784637822 1.3917982262532522 1.4233783012790466 1.0050708240650577 0.9553449238790442 0.20517410942510117 0.03371776925882412 0.6110240421976333 2.3309095717589288 0.03041541771317277 0.009755059838973469 24.648938784575705 -1.3917982262532522 -0.049725900186013416 (ac)MFPFGPHS(ph)PGGDGSAGAGAEEPTPHEGQAAATGPPS(ph)PLHPGADATHPPPPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPAR 52 0 Q5QP82-2;Q5QP82 Q5QP82-2 DCAF10 DDB1- and CUL4-associated factor 10 2 MFPFGPHS(0.642)PGGDGS(0.358)AGAGAEEPTPHEGQAAAT(0.024)GPPS(0.895)PLHPGADAT(0.081)HPPPPAR;MFPFGPHS(0.702)PGGDGS(0.298)AGAGAEEPTPHEGQAAAT(0.005)GPPS(0.992)PLHPGADAT(0.003)HPPPPAR 113.36 7.554e-42 422600000.0 6241.3 10553.6 4577.3 6577.0 11298.9 11760.0 8760.5 5963.4 8604.1 11111.2 True False 6207.697534273616 10904.870196214077 5221.744053395177 7409.647525644999 12737.74794117282 10947.058880062323 8336.721146640088 6408.419189531625 6483.734844033154 10402.073703223086 0.5967750000031397 1.048336178663606 0.5019906801638232 0.7123240747034043 1.224539289432839 1.0523919741763004 0.8014479982060646 0.6160713115833792 0.6233117577338609 1.0 13.344583544755183 -2.463957421999088 2.1738078797720624 3.036645462824159 0.8003749398796097 0.06756110454857389 0.22549327981563957 8303134.284269454 701734.1354740793 83554833.07812455 0.05664255058153694 0.0034359163179021462 2.463957421999088 -2.236270522944549 (ac)MFSFNMFDHPIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MFSFNMFDHPIPR 13 0 Q92890;Q92890-1;Q92890-3;C9IZG3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 0 48.44 0.0077203 56176000.0 74590.0 62160.0 69124.0 68351.0 68338.0 78767.0 76089.0 67080.0 100960.0 71155.0 False True 74188.41572772805 64228.95802348651 78856.05836342128 77004.22959181409 77040.43922893985 73322.02268757386 72408.28438179307 72085.85022533819 76079.76079468947 66613.82698113963 1.113708956381278 0.9641985896062037 1.183779133208302 1.1559796679091308 1.156523243301309 1.1007027521228216 1.0869858055489594 1.0821454567645221 1.1421016362898642 1.0 16.02353404703622 -0.6736682293988667 7.650537509117218 1.0000337303921458 1.1070944849938504 0.24310098287569903 0.057852965097674104 0.0 0.0 0.056155819183394684 0.013236053515888 0.2119980033239941 0.6736682293988667 0.10706075460170461 (ac)MHGHGGYDS(ph)DFS(ph)DDER ddPTM_BT-474_Trastuzumab_2h_R1 2 MHGHGGYDSDFSDDER 16 0 Q70Z53;Q70Z53-2;Q70Z53-4;Q70Z53-5;Q70Z53-3 Q70Z53 FRA10AC1 Protein FRA10AC1 2 MHGHGGY(0.004)DS(0.996)DFS(1)DDER;MHGHGGY(0.026)DS(0.974)DFS(1)DDER 96.143 1.7972e-15 1146420000.0 73423.0 95383.0 88272.0 87100.0 92291.0 90295.0 82558.0 70552.0 75994.0 88050.0 True False 73027.69872606212 98557.76549475899 100699.93032602179 98126.85106943572 104043.7117983858 84053.11918156684 78564.35413781316 75816.9484957969 57266.29696742886 82430.57361660233 0.8859297651588055 1.1956457558231584 1.221633259455322 1.1904181514717982 1.2621980805606134 1.019683783501389 0.9530972634404855 0.9197673286665886 0.6947215633095494 1.0 16.330891913852454 2.2749488466905396 1.8966115105520196 0.8704999500781846 1.1585323002040557 0.5029900447375155 0.12126341036840567 0.27085335207854205 1.9732315057334175 0.05821199363670272 0.03882993499520073 188.3427237234121 -2.2749488466905396 0.28803235012587114 (ac)MKRTRDEVDAT(ph)LQIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 MKRTRDEVDATLQIAK 16 3 Q9BVC3 Q9BVC3 DSCC1 Sister chromatid cohesion protein DCC1 1 MKRT(0.128)RDEVDAT(0.872)LQIAK 40.589 0.073519 0.0 100630.0 90876.0 99112.0 83115.0 68780.0 115370.0 118600.0 117820.0 158570.0 117070.0 True False 100088.21926104416 93900.75272429791 113066.10810305273 93637.35047802706 77538.72530900067 107394.7434517678 112862.86490400249 126612.32667783744 119492.54822913931 109598.49237133033 0.9132262414882091 0.8567704782484876 1.0316392648903763 0.8543671400220966 0.707479853338602 0.9798925252356938 1.0297848306308097 1.1552378498863158 1.0902754740848712 1.0 16.741868427266592 2.3107995463441386 2.902638911337163 1.093345031132463 0.8780674401327059 0.5333475788845623 0.08499867012173189 0.1925479310421101 3.3111862566703683 0.03439672326969144 0.026453779556680584 204.55002944170377 -2.3107995463441386 -0.21527759099975718 (ac)MLSLQYPDVYRDETAVQDYHGHK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLSLQYPDVYRDETAVQDYHGHK 23 1 P48147 P48147 PREP Prolyl endopeptidase 0 58.37300000000001 0.036799 100780000.0 121320.0 134380.0 124250.0 130760.0 130290.0 136700.0 148220.0 88455.0 207290.0 130600.0 False True 120666.82659991925 138852.75706557452 141743.31999963956 147314.20259287517 146881.6592106672 127250.25075718698 141050.0323446144 95055.96126538876 156206.15704369202 122264.99618771476 0.9869286415766797 1.1356705630808053 1.1593123495625806 1.2048763520730177 1.2013385988673178 1.040774176787429 1.1536419804737799 0.7774585059443205 1.277603254523208 1.0 16.89965190156768 (ac)MLTAVCGSLGSQHTEAPHAS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLTAVCGSLGSQHTEAPHASPPR 23 0 Q3SY56 Q3SY56 SP6 Transcription factor Sp6 1 MLTAVCGS(0.002)LGS(0.084)QHT(0.11)EAPHAS(0.804)PPR 46.847 0.0026299 74543000.0 38356.0 57009.0 47281.0 54952.0 53456.0 49000.0 49059.0 44715.0 35908.0 60726.0 True False 38149.49555775222 58906.51010233174 53937.75382618077 61908.91756564453 60263.30474146459 45612.745333592975 46685.82874642043 48051.86035816924 27058.954542548585 56850.414689855716 0.6710504358829162 1.0361667619082982 0.9487662336402504 1.0889791728589 1.0600328083836803 0.802329157710296 0.8212047176984087 0.8452332427179906 0.47596758423253743 1.0 15.794883252304903 2.649651586498759 6.94058858543171 0.7863829881916703 0.9713099684936739 0.21828074033244604 0.1622958159037719 0.38275885808305093 25.67273983268895 0.05128333197707673 0.04830269117453202 446.32538317064115 -2.649651586498759 0.1849269803020036 (ac)MMEGLDDGPDFLSEEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MMEGLDDGPDFLSEEDR 17 0 G3V5X9;Q9UNH7;G3V2U1;H0YJF8;G3V4Z5 G3V5X9 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed 0 ; 98.902 3.0567e-27 69789000.0 12674.8 14543.8 15311.8 13087.6 12643.5 14335.7 14204.3 14020.4 15511.1 16260.9 False True 12606.560285102669 15027.881591087234 17467.56834744855 14744.488818098143 14253.574781104231 13344.706801607947 13517.183743304586 15066.67344214864 11688.59724309139 15223.115440343101 0.8281196010439332 0.9871751712045438 1.1474371600150501 0.9685592200807636 0.9363112850954628 0.87660813280328 0.8879380699881189 0.9897233914563985 0.7678189979506553 1.0 13.893976018968067 3.221991140282388 3.4914136988631754 0.9100217674772191 0.9966028438466794 0.12818401269020352 0.09385498473960328 0.45535865139200155 11.68494906722941 0.027752934075041168 0.03587367886152631 1667.2132006318704 -3.221991140282388 0.08658107636946033 (ac)MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDK 32 0 P31153 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 102.17 1.4721e-08 68885000.0 12588.0 10911.0 11389.0 14919.0 12884.0 11181.0 13029.0 12713.0 15834.0 13910.0 False True 12520.22760665828 11274.166039161222 12992.472205037388 16807.743870320475 14524.701030549046 10408.083787242924 12398.737494386598 13661.708615305959 11931.922864729717 13022.251891049847 0.9614487349352682 0.8657616312052696 0.9977131692535507 1.2906941142700814 1.115375524300204 0.7992537599734472 0.9521193107090956 1.0491049266752095 0.9162718525611142 1.0 13.668691329676124 1.2370204839213492 24.99960627409447 0.9581359517421525 1.0051577499491813 0.01977885341127672 0.1287331520693532 242.85554551774754 3941407.2094572755 0.11053195095688385 0.033375120721270385 17.259192947315032 -1.2370204839213492 0.04702179820702879 (ac)MNLLPNIES(ph)PVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 MNLLPNIESPVTR 13 0 P17980;E9PM69 P17980 PSMC3 26S protease regulatory subunit 6A 1 MNLLPNIES(0.966)PVT(0.034)R 59.607 5.1874e-05 24911000.0 6653.8 5164.9 6527.4 6139.3 6304.5 6368.1 6866.3 4926.7 7251.4 7481.3 True False 6617.976680106678 5336.81057425202 7446.40118282212 6916.534750523391 7107.3407053008805 5927.888235894972 6534.150837186785 5294.355371275688 5464.389633781798 7003.837028936826 0.9449072919264198 0.7619838314630433 1.063188813796896 0.9875350785501235 1.0147781388882156 0.8463772374205027 0.9329387320393806 0.7559221251724878 0.7801994265722207 1.0 12.773929799004648 2.2717360073990003 1.9112374753627188 0.8294727086469494 0.9480202735179968 0.1235160427780626 0.10119342403445376 0.5503186159259239 4.071388490899741 0.04886648996326814 0.03257431509756378 186.95453629052759 -2.2717360073990003 0.11854756487104734 (ac)MNTAPS(ph)RPSPTRR ddPTM_BT-474_Trastuzumab_2h_R1 1 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 MNT(0.001)APS(0.384)RPS(0.308)PT(0.308)RR 43.297 0.017583 403680000.0 11129.0 11947.0 10441.0 7125.4 9240.9 9345.9 9943.6 9073.5 15768.0 13780.0 True False 11069.082700548137 12344.648672885987 11911.002045201114 8027.47490941628 10417.6738398945 8699.839930882179 9462.590079759188 9750.61064429943 11882.187680375022 12900.548602348446 0.8580319366056336 0.9569088147645705 0.9232942266527182 0.6222584137200909 0.8075372731046525 0.6743775167281211 0.7335029208011041 0.7558291468724365 0.9210606499487906 1.0 13.655144797838176 3.806121693233838 24.995092008557826 0.7698242680403978 0.917161757589634 0.2097449627444936 0.10714021019769734 221.90963740767978 82097.19987739665 0.025752899285321804 0.046426696440770854 6399.141200753027 -3.806121693233838 0.1473374895492362 (ac)MNTAPSRPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 4 MNTAPSRPSPTR 12 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 MNT(0.002)APS(0.037)RPS(0.852)PT(0.11)R;MNTAPS(0.041)RPS(0.773)PT(0.186)R;MNTAPS(0.029)RPS(0.925)PT(0.046)R;MNTAPS(0.018)RPS(0.799)PT(0.184)R 91.307 6.5233000000000016e-06 7782990000.0 607422.0 533177.0 302861.0 405980.0 396753.0 533586.0 568223.0 507961.0 780585.0 483489.0 True False 604151.707442928 550923.4741326979 345501.1962849967 457377.026373933 447277.1428107283 496700.4557463374 540735.882667345 545867.6291936937 588220.2860531163 452632.31808424153 1.3347515926392302 1.2171545250336344 0.7633153499673301 1.0104824779409773 0.9881688181343768 1.0973596800348095 1.1946470922712729 1.2059846532922551 1.299554323789226 1.0 18.78798007158095 2.3494552982549726 3.8068685933312865 1.1941491402123119 1.0510841541038847 0.09520571515877674 0.15672930524772838 0.4666234691446894 12.788825227938645 0.059845978110659594 0.04863402247934394 223.59150450998987 -2.3494552982549726 -0.14306498610842722 (ac)MNTAPSRPS(ph)PTRR ddPTM_BT-474_Trastuzumab_2h_R1 2 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 MNT(0.001)APS(0.119)RPS(0.44)PT(0.44)RR;MNTAPS(0.043)RPS(0.563)PT(0.394)RR 62.813 0.00058252 647390000.0 115922.0 69454.6 61210.1 48001.1 45956.2 70212.9 72508.6 94963.1 114068.3 69668.4 True False 115297.88883214508 71766.35437480776 69827.95003227309 54078.034338336365 51808.449666261906 65359.247486388325 69001.0820082492 102049.728734851 85957.69590191035 65222.10306588195 1.7677732457611912 1.1003379376208609 1.0706178848869485 0.8291366238790434 0.7943388396097764 1.0021027291985332 1.0579401577797949 1.5646494660218 1.317922787848209 1.0 15.993073340626651 1.7697836653761532 24.99999999999346 1.3523589585113336 1.0639720296062394 0.08479422929412728 0.28263521973568473 47.696060965043 38209.62283157834 0.13272558147611388 0.0736212063596711 58.85504083685306 -1.7697836653761532 -0.2883869289050942 (ac)MNTAPSRPSPT(ph)RR ddPTM_BT-474_Trastuzumab_2h_R1 1 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 MNTAPS(0.12)RPS(0.359)PT(0.521)RR 67.646 0.0011109000000000002 1366900000.0 43957.0 23298.0 20699.0 26544.0 21505.0 31860.0 22211.0 31143.0 44860.0 34080.0 True False 43720.34039608185 24073.459846061585 23613.239281066733 29904.467678382378 24243.534279878702 29657.593190372925 21136.569075740328 33467.04880094968 33804.854093202914 31904.985222644074 1.370329435697466 0.754535997370587 0.7401112746577171 0.9372976501853428 0.7598666512677845 0.9295598472593525 0.6624848414202985 1.0489598590127838 1.0595477119735643 1.0 14.961494245359724 1.6070919953597473 24.99999999999992 1.0407127079411624 0.8676865204619525 0.12790195283513128 0.1860691186995498 0.1564664925380193 4534.8525700190785 0.08872461377420979 0.04481776094799938 40.466160093055414 -1.6070919953597473 -0.17302618747920995 (ac)MNVDHEVNLLVEEIHR ddPTM_BT-474_Trastuzumab_2h_R1 19 MNVDHEVNLLVEEIHR 16 0 Q9P1F3;Q5SZC9 Q9P1F3 ABRACL Costars family protein ABRACL 0 ;;;;;;;;;;;;;;;;;; 151.72 3.9534e-27 9007749000.0 91483.70000000001 136150.99999999997 141046.2 133726.8 125954.5 124326.6 175776.8 112006.6 170477.5 132723.7 False True 90991.16192399451 140682.7037299826 160904.2789644521 150656.59916868215 141994.05898418895 115732.19477533647 167273.80465141553 120365.10124999045 128465.60440646466 124253.15983552355 0.7323046113631346 1.1322263668481927 1.2949713244914205 1.2124971257721686 1.1427802654849937 0.9314225483563842 1.3462338090462995 0.9687085737644032 1.0339021122401812 1.0 16.922923015327587 -0.48437370601513385 7.766136619550597 0.9999985346733827 1.0983377775287713 0.02006420747667592 0.17293634092960228 0.0 0.0 0.16122767013317615 0.03800172628869223 0.32781309186036245 0.48437370601513385 0.09833924285538853 (ac)MQAHELFR ddPTM_BT-474_Trastuzumab_2h_R1 3 MQAHELFR 8 0 E7EPM6;P33121-2;P33121;P33121-3;D6RER0;D6RG07 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ;; 54.157 0.042873 475150000.0 408248.0 539759.0 658459.0 521838.0 682320.0 1132710.0 494804.0 335321.0 587245.0 684420.0 False True 406050.0381286171 557724.5520237942 751164.3037717718 587902.6372947438 769209.4075725111 1054408.4238125328 470868.44018516154 360344.35574553645 442526.3384298473 640739.7296385572 0.6337207127107147 0.8704385356881302 1.1723392026829762 0.9175373558096376 1.2005021258888129 1.6456111195216927 0.7348825402956979 0.5623880322651563 0.6906491324948392 1.0 19.289378923305563 -2.3163359689860115 2.2204079765114644 1.3367079493905605 0.9333036058955436 0.003657776946961122 0.31075650527441473 25114677.313752968 4020679.628891323 42491006.430216685 0.08265651876053408 0.004826852536199039 2.3163359689860115 -0.40340434349501686 (ac)MS(ph)GDEMIFDPTMSK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSGDEMIFDPTMSK 14 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 MS(1)GDEMIFDPTMSK 56.094 0.0010890999999999995 18347000.0 71863.0 63496.0 57526.0 70084.0 56505.0 62413.0 62709.0 76837.0 99508.0 77972.0 True False 71476.09759272983 65609.42597585743 65625.16077504448 78956.62721412556 63700.57681862576 58098.536214398795 59675.52609835663 82570.96711038017 74985.5867388862 72995.76020481231 0.9791814948180745 0.8988114623612355 0.8990270200750383 1.0816604552454578 0.8726613249850947 0.7959165854480491 0.8175204413368445 1.1311748364384677 1.027259480940959 1.0 16.155525050266398 1.7316727067961337 14.476418615161878 1.058593200707206 0.90702092681434 0.4010605556610509 0.08189239770078113 0.09095892240428614 125.3033683579125 0.04021847649488958 0.022166653825356295 53.9104189443162 -1.7316727067961337 -0.1515722738928661 (ac)MS(ph)PTPPLFSLPEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 MSPTPPLFSLPEAR 14 0 A0A087WWS1;Q96FV9;Q96FV9-2;J3KRD7;J3QQZ3;J3KT14 A0A087WWS1 THOC1 THO complex subunit 1 1 MS(0.882)PT(0.118)PPLFS(0.001)LPEAR;MS(0.836)PT(0.163)PPLFS(0.001)LPEAR;MS(0.985)PT(0.015)PPLFSLPEAR;MS(0.854)PT(0.145)PPLFSLPEAR 66.289 5.6004e-06 227335000.0 19103.3 19444.5 15523.800000000001 18635.4 18613.5 20731.199999999997 20298.5 17640.4 21277.300000000003 20177.6 True False 19000.449955376167 20091.698428051546 17709.416104711523 20994.639729269395 20983.818894141943 19298.100939995573 19316.584007199803 18956.816224136164 16033.794516212805 18889.84829308752 1.0058550847297762 1.0636241284904244 0.9375097052098633 1.1114244753861837 1.1108516367397552 1.0216122776940164 1.02259074331838 1.0035451809887297 0.8488048324919661 1.0 14.20532349484433 1.4565518704288503 4.419155492663361 0.9227420256353174 1.0394679128127782 0.36608130804580885 0.05902438648587846 0.1934671371766386 7.3886867022480835 0.038865436410285455 0.014796506490750568 28.6122407359696 -1.4565518704288503 0.1167258871774608 (ac)MT(ph)TS(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 32 3 O75531 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed 2 MT(0.651)T(0.651)S(0.696)QKHRDFVAEPMGEKPVGS(0.002)LAGIGEVLGK 61.499 2.6299e-10 235730000.0 228470.0 199190.0 228180.0 219910.0 213630.0 336040.0 343690.0 323220.0 549090.0 326070.0 True False 227239.94290540353 205819.91873710204 260305.76062388587 247750.58345211943 240834.51421578636 312810.34575307294 327064.40167670033 347340.3176779037 413774.1269290413 305259.9334374281 0.7444145726775603 0.674244786793452 0.8527347748938795 0.811605311782272 0.7889489835886124 1.0247343705759948 1.071429184936718 1.137850990683981 1.3554812853087919 1.0 18.219678717029485 2.5282905979051638 1.1929032849503056 1.179226524759831 0.755125234353651 0.7785015281263099 0.09356575588329609 0.2019056498539519 0.5834760984060539 0.0494887968663188 0.03743823631380362 337.5130720266822 -2.5282905979051638 -0.42410129040618005 (ac)MVDYS(ph)VWDHIEVSDDEDETHPNIDTASLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 MVDYSVWDHIEVSDDEDETHPNIDTASLFR 30 0 Q16543;K7EKQ2;K7EQA9;K7EJ06 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 1 MVDY(0.344)S(0.37)VWDHIEVS(0.284)DDEDET(0.002)HPNIDTASLFR 42.973 0.0012057 31639000.0 3680.6 3604.7 2810.7 2916.8 3336.8 3658.7 3648.0 4350.0 4184.9 2981.7 True False 3660.784058553104 3724.680260412836 3206.4221289576435 3286.0665809337593 3761.7217012368883 3405.7826806534013 3471.532303286689 4674.619088852424 3153.5874697869986 2791.4053532381995 1.3114483907922483 1.3343387251485999 1.1486766424797457 1.1772086691464294 1.34760854308496 1.2200960626168058 1.2436503710432099 1.674647174918391 1.1297490227023623 1.0 11.446775924882488 (ac)MVDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_BT-474_Trastuzumab_2h_R1 13 MVDYSVWDHIEVSDDEDETHPNIDTASLFR 30 0 Q16543;K7EKQ2;K7EQA9;K7EJ06 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 1 MVDY(0.009)S(0.009)VWDHIEVS(0.981)DDEDET(0.001)HPNIDTASLFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDY(0.02)S(0.021)VWDHIEVS(0.951)DDEDET(0.007)HPNIDTASLFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDY(0.002)S(0.002)VWDHIEVS(0.996)DDEDETHPNIDTASLFR;MVDYS(0.001)VWDHIEVS(0.998)DDEDET(0.001)HPNIDTASLFR;MVDYS(0.001)VWDHIEVS(0.997)DDEDET(0.002)HPNIDTASLFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDYSVWDHIEVS(0.995)DDEDET(0.004)HPNIDTASLFR;MVDY(0.03)S(0.033)VWDHIEVS(0.936)DDEDETHPNIDTASLFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDYS(0.001)VWDHIEVS(0.986)DDEDET(0.013)HPNIDTASLFR 154.68 1.4269999999999993e-71 1546488000.0 65764.29999999999 66208.2 66206.1 78178.8 70546.4 81434.2 80266.7 64699.500000000015 86414.50000000001 87985.8 True False 65410.23231590064 68411.89991329794 75527.34340626282 88076.22806414712 79530.06587872758 75804.84542948725 76383.89307242923 69527.70522740402 65118.80436997508 82370.47091556672 0.7940980740895478 0.8305391380294898 0.9169225641999983 1.069269449174681 0.965516707561977 0.9202915145063391 0.9273213109431656 0.8440853191026783 0.7905600592805236 1.0 16.329839616243316 7.9994301279713715 0.006463117227017342 1.7402788957804154 9.82619223397496e-07 0.05151737516099619 0.08444864710114101 183413.0475130419 91.68784006100537 11211.857121136069 13581.5614101654 99868868.16921863 -7.9994301279713715 -1.740277913161192 (ac)S(ph)CGRPPPDVDGMITLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SCGRPPPDVDGMITLK 16 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 S(1)CGRPPPDVDGMITLK;S(1)CGRPPPDVDGMITLK 80.469 0.00017195 134588000.0 237883.0 221443.0 209960.0 218561.0 213091.0 238381.0 224578.0 224273.0 296030.0 269663.0 True False 236602.2643592862 228813.59638987997 239520.54299496431 246230.8001904357 240226.87576068973 221902.28255851477 213714.30416872786 241009.39009521835 223077.37309877062 252452.8764698907 0.9372135808779546 0.9063616132619898 0.9487732773903695 0.9753535140242416 0.9515711570406323 0.8789849640908345 0.8465512738739458 0.9546708021921184 0.8836396567078783 1.0 17.94565459011145 2.763434154905987 24.387980871445613 0.9082246620140404 0.9437948823591635 0.1118142520950891 0.04285873568428143 1145.929688067112 1123557.6573254978 0.01290079879157435 0.013677330245240845 580.008228528031 -2.763434154905987 0.03557022034512314 (ac)S(ph)DAAVDTSSEITTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 1 S(0.595)DAAVDT(0.196)S(0.149)S(0.051)EIT(0.004)T(0.004)K 68.107 2.3267e-43 1723800000.0 2198200.0 2310200.0 1913900.0 2050300.0 2208500.0 2630600.0 2553900.0 2278900.0 2679600.0 2633000.0 True False 2186365.1354429796 2387093.6104546078 2183360.484082983 2309867.7697780076 2489739.384194941 2448752.8137663202 2430358.1001545712 2448963.090019723 2019248.484800415 2464959.6857752902 0.8869780500103044 0.9684108118400355 0.8857591045738594 0.9370813580066717 1.0100527804015005 0.9934250965228778 0.9859626160133991 0.9935104026861453 0.8191811397375093 1.0 21.233132620954674 3.466622599458882 23.84059762785425 0.9712364832025124 0.9178912602170323 0.1534952017530551 0.05585742603661878 214.03993528302922 486043.3636626983 0.015103884607697331 0.020475872871460375 2928.347414542664 -3.466622599458882 -0.05334522298548017 (ac)S(ph)DKPDMAEIEK ddPTM_BT-474_Trastuzumab_2h_R1 6 SDKPDMAEIEK 11 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK 113.62 5.9468e-05 6122187000.0 13065050.0 8858800.0 7687640.0 6966710.0 6699880.0 11098720.0 10796870.0 9902990.0 15059560.0 9825230.0 True False 12994709.222463518 9153659.802742304 8769992.889835242 7848694.77168714 7553070.004700006 10331491.609976651 10274584.150051245 10642001.400164306 11348333.225765385 9198175.409597395 1.4127485771694257 0.9951603872645609 0.9534491895734685 0.8532882253471482 0.8211487244327954 1.1232109793423544 1.1170241588707608 1.1569687385022491 1.2337591664021226 1.0 23.13291627956032 2.5148906272767984 24.73034788159016 1.1384016576390854 0.9926821126525367 0.1168532733181471 0.1599704238503924 935.2130669099347 612350.5955649674 0.05300876667690701 0.04996561342503518 327.25826777723364 -2.5148906272767984 -0.1457195449865487 (ac)S(ph)DKPDMAEIEKFDK ddPTM_BT-474_Trastuzumab_2h_R1 9 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK 122.51 4.3703e-06 2757276000.0 8652620.0 5706297.0 4842377.0 4734139.0 4307143.0 7915630.0 7824770.0 7147969.0 14090540.0 7483840.0 True False 8606035.255316451 5896227.646115624 5524141.590904583 5333480.511997794 4855632.130613328 7368441.1294887485 7446255.981575825 7681386.74343113 10618115.220562624 7006214.923962225 1.2283430281138847 0.8415710494335121 0.7884630504284494 0.7612499145232545 0.6930464142637695 1.0517006985166355 1.0628072450516182 1.096367557489526 1.5155280469982728 1.0 22.74020381452646 2.09599290614062 1.5022802461758904 1.2235652464463715 0.8588813199092853 0.3760147552070696 0.18604946876619852 0.4122599149438146 1.7643568601042092 0.11687743457070698 0.060894527599148644 124.7363139379013 -2.09599290614062 -0.36468392653708626 (ac)S(ph)DLEDDETPQLSAHALAALQEFYAEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 SDLEDDETPQLSAHALAALQEFYAEQK 27 0 Q8WVE0 Q8WVE0 N6AMT2 Protein-lysine N-methyltransferase N6AMT2 1 S(0.638)DLEDDET(0.362)PQLS(0.001)AHALAALQEFYAEQK;S(0.812)DLEDDET(0.178)PQLS(0.009)AHALAALQEFYAEQK;S(0.909)DLEDDET(0.091)PQLS(0.001)AHALAALQEFYAEQK;S(0.987)DLEDDET(0.013)PQLSAHALAALQEFYAEQK 106.11 6.278500000000001e-46 200669000.0 76414.0 87153.0 82392.0 82945.0 88098.0 98101.0 102427.0 91290.0 124726.0 104335.0 True False 76002.59551439344 90053.83491989906 93992.07743589782 93445.82849545758 99316.75810224385 91319.50877491449 97472.21470086237 98102.52336122707 93988.94854277368 97676.25097431253 0.7781072139468278 0.9219624424731653 0.9622817880327574 0.9566893442709273 1.0167953531341283 0.9349202888523048 0.997911096388171 1.0043641354235293 0.9622497547279066 1.0 16.57572020718266 5.5818142633529755 0.9830610597222621 0.9852449108736595 4.0187732967449715e-11 0.8728872561046669 0.023377617455294503 2.6451197534863864 0.6008887217126196 0.006800770943613978 4.097199670551258 381780.9579648029 -5.5818142633529755 -0.9852449108334718 (ac)S(ph)DNDDIEVES(ph)DADKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDNDDIEVESDADKR 15 1 Q6V3B1;G3V563;G3V2R5;P61244-2;A0A494C130 Q6V3B1 MAX Protein max 2 S(1)DNDDIEVES(1)DADKR 73.848 0.00050433 242420000.0 431980.0 287620.0 286830.0 320040.0 282630.0 349870.0 324630.0 329470.0 586070.0 370350.0 True False 429654.26767749025 297193.25783003826 327213.170828947 360557.0311855591 318621.255220745 325684.3104053916 308926.40669297124 354056.72441476065 441640.9014356541 346713.9459274126 1.239218302939109 0.8571713405847774 0.9437554349124789 1.0399265314267014 0.9189744426589952 0.9393458620022637 0.891012346984299 1.021178203454456 1.2737904160570317 1.0 18.403386341885184 1.4392450592785888 8.599165375083754 1.1412743454050915 0.9686568593580481 0.2250677787058728 0.11756839822855465 0.2621076045968748 46.56845015431336 0.06551812792347647 0.027075491817006626 27.4944514444906 -1.4392450592785888 -0.1726174860470434 (ac)S(ph)DNDDIEVESDADKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDNDDIEVESDADKR 15 1 Q6V3B1;G3V563;G3V2R5;P61244-2;A0A494C130 Q6V3B1 MAX Protein max 1 S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR 140.31 1.9314999999999997e-33 10008400000.0 4052800.0 3729000.0 3367340.0 3267840.0 3344610.0 3959110.0 3953390.0 3807360.0 5310190.0 3954000.0 True False 4030980.1751084076 3853117.5107718958 3841432.202556032 3681548.2089408156 3770526.258443392 3685426.0444424795 3762149.4222836024 4091484.536582339 4001564.8274004706 3701652.334810287 1.088967793436765 1.0409182608904763 1.037761479226792 0.9945688778818009 1.0186062648254173 0.9956164736987275 1.0163432656558267 1.1053130241611497 1.0810212482057837 1.0 21.819737970637817 1.7577453547618873 24.999999990835192 1.072514183413745 1.0256083579309683 0.14432332336247655 0.03577818497331555 11.178938237654712 14581.40982827167 0.01646293272524424 0.009129621747360225 57.24602748704493 -1.7577453547618873 -0.046905825482776775 (ac)S(ph)DNGELEDKPPAPPVR ddPTM_BT-474_Trastuzumab_2h_R1 6 SDNGELEDKPPAPPVR 16 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR 124.42 2.1343999999999998e-26 3555770000.0 3064710.0 2790350.0 2618750.0 2545380.0 2472200.0 3323670.0 3167750.0 2925810.0 4356390.0 3394570.0 True False 3048209.941881294 2883225.1129478067 2987447.2374169505 2867624.8470163057 2787020.016122584 3093912.515977616 3014513.830519853 3144148.799162144 3282816.0571352695 3177925.636362405 0.9591822750674589 0.9072663878466566 0.9400620339362363 0.9023574416608177 0.8769934652444326 0.9735635348343286 0.9485790970144914 0.9893714198929703 1.0330059393375002 1.0 21.599653935260953 1.8994018479948902 1.2738555555127562 1.0156645538211158 0.9199092023892661 0.6623388388563496 0.026637624746305995 0.2614049389134887 0.7859306587954289 0.0201761065433122 0.008735865311571915 79.32349627633506 -1.8994018479948902 -0.09575535143184966 (ac)S(ph)DQDHSMDEMTAVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 S(1)DQDHSMDEMTAVVK 121.08 3.4418999999999998e-18 181710000.0 128330.0 149370.0 154200.0 141320.0 139420.0 178570.0 166690.0 163460.0 189850.0 170350.0 True False 127639.08553880347 154341.6901539282 175910.01966957308 159211.09751013387 157174.31059291752 166225.87620856552 158626.5678823626 175658.2152330617 143064.01135966487 159478.11715602755 0.8003548562962156 0.9677922771243026 1.1030354684804133 0.9983256659242319 0.985554089776116 1.042311504379853 0.9946604005060342 1.1014565406563217 0.8970761249939782 1.0 17.282998952117595 4.68422468720706 3.4774411101693334 1.0218922823709145 0.7849691024316194 0.5570983772687368 0.05695107979801854 0.16739997665123554 3.457324230582091 0.013037368798351686 0.09479919213827463 48330.87826840234 -4.68422468720706 -0.23692317993929501 (ac)S(ph)DQEAKPSTEDLGDK ddPTM_BT-474_Trastuzumab_2h_R1 6 SDQEAKPSTEDLGDK 15 1 B8ZZN6;P63165;B8ZZJ0;B9A032 B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 1 S(0.999)DQEAKPS(0.001)TEDLGDK;S(1)DQEAKPSTEDLGDK;S(1)DQEAKPSTEDLGDK;S(0.998)DQEAKPS(0.001)T(0.001)EDLGDK;S(0.974)DQEAKPS(0.023)T(0.003)EDLGDK;S(0.996)DQEAKPS(0.002)T(0.002)EDLGDK 146.16 2.5455e-17 3095090000.0 6127670.0 3785330.0 3396310.0 2972420.0 3056540.0 5301100.0 5090920.0 4723290.0 7213290.0 4640740.0 True False 6094679.305568145 3911322.4207696933 3874480.9267442734 3348728.0672309143 3445772.2514680526 4934647.434447146 4844652.750397 5075765.884180643 5435671.332633964 4344564.000062594 1.4028287546184923 0.9002796185562788 0.8917997126267335 0.7707857605924708 0.7931226819120187 1.1358210937567152 1.115106774886318 1.1683027075001113 1.251143114143479 1.0 22.05077997156317 2.644958467292551 8.872027686137084 1.1454600387453941 0.9356742816694958 0.21147465363453066 0.17399497290259539 0.5228494872166602 45.81844033672798 0.05712209943624803 0.05382208166269834 441.52822084556783 -2.644958467292551 -0.2097857570758983 (ac)S(ph)DQEAKPSTEDLGDKK ddPTM_BT-474_Trastuzumab_2h_R1 8 SDQEAKPSTEDLGDKK 16 2 B8ZZN6;P63165;B8ZZJ0;B9A032 B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 1 S(0.975)DQEAKPS(0.019)T(0.005)EDLGDKK;S(1)DQEAKPSTEDLGDKK;S(0.997)DQEAKPS(0.002)T(0.001)EDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK 128.9 1.6219e-11 53818771000.0 23924170.0 13536676.0 11995820.0 10143537.0 10010046.0 19240460.0 19061043.0 17367301.0 32268772.0 16482862.0 True False 23795364.926945142 13987236.077566564 13684727.186463403 11427707.744159719 11284766.023908976 17910412.28737107 18138987.529834606 18663337.18998757 24316565.51999177 15430911.635471866 1.5420582716736877 0.9064426268512453 0.8868385426435588 0.7405724311122509 0.7313090950484142 1.1606840030241274 1.1754968182267043 1.2094772901871302 1.5758346683869264 1.0 23.879319960930502 2.536383584265046 6.726969502178596 1.2402928354797422 0.9412442395910474 0.21934147440127683 0.25001730888413465 0.35479064757474604 33.32343420971607 0.08249836907562808 0.07702995388877622 343.8615244901155 -2.536383584265046 -0.2990485958886948 (ac)S(ph)DS(ph)GEQNYGERES(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 S(1)DS(1)GEQNY(0.029)GERES(0.971)R 47.288 0.0024591 0.0 2648.6 3720.1 1913.1 5656.6 4781.3 3246.1 5196.1 4932.3 4271.6 1673.5 True False 2634.340231887124 3843.921279652061 2182.4478510367067 6372.724980015738 5390.170214014605 3021.704747497473 4944.744791970385 5300.373271711914 3218.9214165074804 1566.695797244568 1.6814624999443284 2.453521153508276 1.3930259179063957 4.067621162464207 3.4404702071037576 1.92871184872769 3.15616139436065 3.383154075624614 2.0545924883240065 1.0 10.613509365933053 3.7692883401214985 24.998600037420122 2.871286625566884 1.9037550334932014 0.15613543938174523 0.8813626462839244 1075.7298173277777 875158.6272149335 0.21611001223783086 0.3895489033331852 5878.795324753905 -3.7692883401214985 -0.9675315920736827 (ac)S(ph)DVEENNFEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDVEENNFEGR 11 0 Q13595;F8WEH2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 S(1)DVEENNFEGR;S(1)DVEENNFEGR 81.97200000000002 6.1999e-08 617650000.0 56498.0 67830.0 66439.0 78740.0 63543.0 66044.0 84604.0 68206.0 100451.0 80980.0 True False 56193.821045517914 70087.68054589904 75793.03370185957 88708.47592660584 71634.82440113147 61478.53373085339 80511.3813013341 73295.87806305033 75696.19702443875 75811.78706953388 0.7412280229455277 0.9244958238699117 0.9997526325601966 1.1701145607508663 0.944903519230178 0.8109363478592827 1.0619902842745257 0.9668137488412458 0.9984753024620154 1.0 16.21013455281034 4.687604586626155 2.642671902348909 0.9925211624424792 0.7060350251604263 0.4449843982796132 0.08520063544177975 0.39006012065816087 3.8604768283322537 0.02175521484409249 0.2334276733930321 48708.4810615311 -4.687604586626155 -0.28648613728205297 (ac)S(ph)DVEENNFEGRES(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 4 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 S(1)DVEENNFEGRES(1)R;S(1)DVEENNFEGRES(1)R;S(1)DVEENNFEGRES(1)R;S(1)DVEENNFEGRES(1)R 62.765 3.7464e-05 10217080000.0 108323.0 84674.0 103012.0 135054.0 80968.9 112079.0 99497.2 95104.8 127656.0 124356.0 True False 107739.8010038166 87492.32290348603 117515.19420364479 152151.82255260125 91279.80947473003 104331.24253558727 94684.14031978512 102202.00310838896 96196.8893027622 116419.49361347208 0.9254446799221341 0.7515263998138659 1.0094116591316793 1.3069273695500272 0.7840594958932816 0.8961664348238846 0.8133014272863 0.8778770628200202 0.8262953764611658 1.0 16.82897312189974 (ac)S(ph)ESGHSQPGLYGIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SESGHSQPGLYGIER 15 0 Q9H0W8-2;Q9H0W8;M0R2N0;M0QZC7;M0QZH1;M0QX70;M0QYR7 Q9H0W8-2 SMG9 Protein SMG9 1 S(0.483)ES(0.483)GHS(0.035)QPGLYGIER 50.675 2.9859e-06 316260000.0 19221.0 19125.0 19887.0 16798.0 19253.0 19216.0 17929.0 22742.0 23347.0 20388.0 True False 19117.51627165386 19761.564063693353 22686.916739097247 18924.625077662262 21704.755428528475 17887.64314959844 17061.705774568814 24439.123521536058 17593.44468377192 19086.820384955015 1.0016082242133446 1.035351287701654 1.1886168718274297 0.9915022353633818 1.1371593063052565 0.9371724985528855 0.8938998445240006 1.2804187931060502 0.9217588015675867 1.0 14.220289168151899 (ac)S(ph)GDEMIFDPTMSK ddPTM_BT-474_Trastuzumab_2h_R1 19 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 S(0.999)GDEMIFDPT(0.001)MSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(0.998)GDEMIFDPT(0.002)MSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK 84.65799999999999 4.6171e-41 6003341000.0 8965385.0 9380896.0 9081923.0 8794331.0 8284816.0 10504525.0 9887102.0 9744470.0 12925786.0 10260359.0 True False 8917116.363307917 9693133.452488627 10360578.816910157 9907692.40289692 9339838.20964834 9778371.911742054 9408825.103862515 10471651.832816053 9740399.236958645 9605534.10428472 0.9283311335420982 1.0091196748929174 1.07860517743502 1.0314566889599004 0.9723392898560568 1.0179935655405394 0.9795212844713694 1.09016861729167 1.0140403574866041 1.0 23.195434404784965 1.7588681450683759 24.99999999986452 1.0437620384961857 1.0062158820328526 0.08882928940356505 0.043477327922742 19.452605726071106 23968.857794637177 0.020305934166486614 0.01126063277006013 57.394218277334964 -1.7588681450683759 -0.037546156463333036 (ac)S(ph)GDEMIFDPTMSKK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGDEMIFDPTMSKK 14 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(0.998)GDEMIFDPT(0.001)MSKK 112.13 3.2558e-08 694666000.0 1142750.0 1427440.0 1345520.0 1405830.0 1323390.0 1549870.0 1630540.0 1382630.0 2718320.0 1830260.0 True False 1136597.5609714596 1474951.4774942966 1534957.5205305032 1583807.9338570028 1491915.8721529276 1442731.134901546 1551664.5509323128 1485808.8714528794 2048426.4596218304 1713451.2398355806 0.6633381414930286 0.8608073829027256 0.8958279552079899 0.9243379076307896 0.8707080992255659 0.8420030295346995 0.9055784692660455 0.8671439472041554 1.1954973751213331 1.0 20.708473706586386 7.543426988397943 0.17610110362730816 1.0362520935790904 2.792974817641794e-13 0.4598996349794787 0.09317551727555982 51.91411657738191 0.6615756646729338 0.22554257153061505 13.871205498022066 34948375.10497623 -7.543426988397943 -1.036252093578811 (ac)S(ph)GEDEQQEQTIAEDLVVTK ddPTM_BT-474_Trastuzumab_2h_R1 19 SGEDEQQEQTIAEDLVVTK 19 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.997)GEDEQQEQT(0.003)IAEDLVVTK;S(0.963)GEDEQQEQT(0.037)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.997)GEDEQQEQT(0.003)IAEDLVVTK;S(0.985)GEDEQQEQT(0.015)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.991)GEDEQQEQT(0.009)IAEDLVVTK;S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(0.997)GEDEQQEQT(0.003)IAEDLVVTK;S(0.997)GEDEQQEQT(0.003)IAEDLVVTK 152.0 4.2087999999999956e-191 6473690000.0 4124819.7 4192532.9 3836103.8 3923357.4 3804107.2 4633650.8 4474676.6 4253383.6 5155104.4 4752884.8 True False 4102612.1290457505 4332078.823136837 4376193.871028037 4420054.044569105 4288537.703210113 4313337.4266367275 4258219.3979334 4570792.682476291 3884697.995479904 4449551.622914598 0.9220282124423154 0.9735989578876236 0.9835134507691115 0.9933706627441774 0.9638134505788661 0.9693869837184524 0.9569996617196522 1.0272479273950477 0.8730538096185303 1.0 22.08522853372034 4.738024974558215 6.840467279278746 0.9746599279180239 0.9211802274119096 0.12417838037002715 0.038232550332706255 0.20724243855390148 69.36715668386034 0.008482424365259469 0.05155860400439287 54704.74205232887 -4.738024974558215 -0.05347970050611428 (ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142;E9PKE3;E9PNE6;P11142-2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 S(1)KGPAVGIDLGTTYSCVGVFQHGK;S(1)KGPAVGIDLGTTYSCVGVFQHGK;S(1)KGPAVGIDLGTTYSCVGVFQHGK 118.16 1.6271e-24 775177000.0 1014370.0 777547.0 741934.0 670384.0 610914.0 915940.0 908344.0 933929.0 1515790.0 1111610.0 True False 1008908.7446271025 803427.1818579137 846391.8581940648 755254.5456639791 688710.276729031 852623.2236908398 864403.9305089478 1003623.5243753694 1142243.8650453868 1040666.0981027986 0.9694836282900041 0.7720316663746549 0.8133174125082885 0.7257414717754878 0.6617975525335112 0.819305275001489 0.8306256272639341 0.9644049385341176 1.0976084136187112 1.0 19.98907581770824 1.6712570036336913 2.217742887036969 1.0495175059739015 0.7860274767319918 0.6412295961060381 0.07772739969964135 0.16850095690866357 1.7966699615497304 0.05545240005763119 0.02215083444589846 46.90908952272282 -1.6712570036336913 -0.2634900292419097 (ac)S(ph)KSES(ph)PKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSESPKEPEQLR 13 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 2 S(0.505)KS(0.505)ES(0.989)PKEPEQLR;S(0.544)KS(0.544)ES(0.912)PKEPEQLR 64.04 2.6786e-05 1042280000.0 2398600.0 1468960.0 1302140.0 1206780.0 1215480.0 2005770.0 1814470.0 1950450.0 3377600.0 1748990.0 True False 2385686.20410951 1517853.4455949278 1485469.9935962236 1359558.2242660578 1370264.173285608 1867115.8409747113 1726697.1541514788 2096002.4831844196 2545235.7375212265 1637367.9608143275 1.4570250922236285 0.9270081508374205 0.9072304021738895 0.8303315179013862 0.8368700292658234 1.1403153632285081 1.0545565782859978 1.2801047372039667 1.5544677790417865 1.0 20.642947140121485 1.8521722733236439 2.22334219313968 1.3164869322733919 0.9909418190679964 0.2238945419607774 0.21383523748566835 0.38185262762064826 3.526723530694922 0.1287491142198519 0.06087743382114432 71.14956895155697 -1.8521722733236439 -0.3255451132053955 (ac)S(ph)LPLNPKPFLNGLTGKPVMVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLPLNPKPFLNGLTGKPVMVK 21 2 P62306;A0A0B4J254;F8W0W6 P62306 SNRPF Small nuclear ribonucleoprotein F 1 S(1)LPLNPKPFLNGLTGKPVMVK;S(1)LPLNPKPFLNGLTGKPVMVK 92.492 2.4825e-08 1194820000.0 1240400.0 1036680.0 1008770.0 855730.0 756700.0 1068170.0 1165530.0 1026200.0 1870120.0 1260640.0 True False 1233721.8242213954 1071185.2671137066 1150796.047613976 964065.330260027 853061.2596877117 994329.9221017157 1109148.861143021 1102780.2549380134 1409253.9843241328 1180184.8759117972 1.0453631879227703 0.907641920327204 0.9750981147973824 0.8168765334458309 0.7228200234549239 0.8425204748819611 0.9398094178135483 0.9344131393702348 1.19409595317459 1.0 20.170581444732676 1.4105647745853904 4.368149179310602 1.0957688489184922 0.8885812516739134 0.41428208816790013 0.09477626138578733 0.20523569273387884 6.530624401630564 0.07065315339391078 0.025191413926990126 25.737406066247203 -1.4105647745853904 -0.2071875972445788 (ac)S(ph)QERPTFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQERPTFYR 9 1 Q16539-2;Q16539;Q16539-5;Q16539-3;Q16539-4;B5TY33 Q16539-2 MAPK14 Mitogen-activated protein kinase 14 1 S(1)QERPTFYR;S(1)QERPTFYR 76.47800000000002 0.00029334 635810000.0 62547.0 64813.0 53169.0 65421.0 68852.0 62319.0 51883.0 60321.0 63257.0 61000.0 True False 62210.253901624965 66970.26152471402 60654.733046767375 73703.29189223378 77619.89408222311 58011.03421314661 49373.221077692804 64822.45932383155 47668.1599503731 57106.927775272554 1.0893643963204438 1.1727169387969127 1.062125654622083 1.2906191028568603 1.3592027641142468 1.0158318171384022 0.8645749824257143 1.13510675235273 0.8347176394772463 1.0 15.801378152471496 2.527541777994309 13.311452719376225 0.9783579108999256 1.191163385653988 0.5063332908106244 0.11140036919496718 2.0830189514520456 549.1444591427818 0.036673652597855974 0.03454361459653957 336.9316261245694 -2.527541777994309 0.21280547475406242 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQGDSNPAAIPHAAEDIQGDDR 22 0 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 S(0.998)QGDS(0.002)NPAAIPHAAEDIQGDDR;S(0.997)QGDS(0.003)NPAAIPHAAEDIQGDDR 120.66 1.1052e-38 1272440000.0 6133.1 6306.1 10368.1 13403.099999999999 4373.3 5750.0 7077.1 7222.1 7345.8 7306.9 True False 6100.080071051466 6515.994726382055 11827.838358859262 15099.931085749202 4930.213832420066 5352.516034044074 6734.753635852586 7761.0497750807135 5535.526018676996 6840.567386248179 0.8917506000035407 0.9525517926307365 1.72907270567017 2.2074091567470115 0.7207317104033563 0.7824666773701281 0.9845314365869249 1.1345622865557923 0.8092203038311191 1.0 12.739900278103363 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDRWMSQHNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQGDSNPAAIPHAAEDIQGDDRWMSQHNR 29 1 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 S(0.529)QGDS(0.471)NPAAIPHAAEDIQGDDRWMSQHNR 54.072 0.0053837 211290000.0 9671.5 16434.0 8607.5 9623.6 11772.0 8311.4 14147.0 11661.0 20079.0 10258.0 True False 9619.42971860467 16980.99575543721 9819.361182268802 10841.946773270069 13271.094421889433 7736.852480931121 13462.655563211842 12531.203033358197 15130.799494815454 9603.32565768435 1.0016769254208757 1.7682411656892447 1.0224959073851239 1.1289783518477896 1.3819269381196317 0.8056430404128051 1.4018743134509188 1.3048816087300996 1.575579131038647 1.0 13.22931838622384 (ac)S(ph)REMQDVDLAEVKPLVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SREMQDVDLAEVKPLVEK 18 2 Q92597;E5RI76;E5RIR1;E5RGM5;E5RIM2;E5RJ98 Q92597 NDRG1 Protein NDRG1 1 S(1)REMQDVDLAEVKPLVEK;S(1)REMQDVDLAEVKPLVEK 68.567 0.00013195 203747000.0 251950.0 228500.0 218321.0 230461.0 199387.0 317120.0 385350.0 256470.0 451570.0 396850.0 True False 250593.5291942764 236105.4843688329 249058.69911984995 259637.3389703015 224777.75259066134 295198.2408201837 366709.1483200452 275609.0937282714 340286.62422799 371522.693239621 0.6745039636990656 0.6355075710450665 0.6703727757464725 0.6988465138059364 0.605017557960279 0.7945631483398773 0.9870437391654264 0.7418364981288283 0.9159241963411244 1.0 18.503090810165293 2.5349323462107964 4.902065251178521 0.8792810271475378 0.6603401681321424 0.7281261470634549 0.07226031378101284 0.12073265873086741 6.043039312461969 0.02358061254139628 0.021683976424577974 342.71439481706005 -2.5349323462107964 -0.2189408590153954 (ac)S(ph)SSPLSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPLSKK 8 1 P22314;Q5JRR9 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 S(0.333)S(0.333)S(0.333)PLS(0.001)KK 41.652 0.087371 1433800000.0 3647200.0 3607500.0 2931300.0 2987400.0 2850700.0 3623400.0 4336000.0 3733500.0 6266800.0 4448600.0 True False 3627563.880442014 3727573.4567202013 3344001.560683651 3365604.533694975 3213719.7475773217 3372922.8865661444 4126251.114871458 4012112.728328857 4722431.110817738 4164686.539361923 0.8710292710283539 0.8950429813839741 0.8029419571144938 0.8081291357429805 0.7716594555684616 0.8098863755260952 0.9907711122728691 0.9633648752214514 1.133922341137652 1.0 21.989776482651752 2.020724314292179 1.9201988410909825 1.0391199351830749 0.8247216587191434 0.751768745212059 0.054594477817605576 0.1748150342181053 1.2084319889435122 0.03274406292572472 0.01710112160834664 104.88764012387776 -2.020724314292179 -0.2143982764639315 (ac)S(ph)SSPVNVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPVNVKK 9 1 Q00839;A0A1X7SBS1;Q00839-2;A0A1W2PPS1 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(0.446)S(0.446)S(0.108)PVNVKK 46.426 0.086857 14189000000.0 2486200.0 2287100.0 2392100.0 2298500.0 1975000.0 2921300.0 2997900.0 2662000.0 4135400.0 2958300.0 True False 2472814.57544279 2363224.740918855 2728886.8874940695 2589489.864329483 2226504.5432578707 2719357.407000516 2852880.1239098627 2860651.957362104 3116286.0815209835 2769498.761271945 0.8928744110746967 0.8533041335730727 0.985336020240997 0.9350030772861622 0.8039377285134823 0.9818951519413568 1.0301070229038929 1.0329132467451603 1.1252166367064087 1.0 21.40119346254387 2.4494081852799514 3.787715874568355 1.0462269049399084 0.8982422205966022 0.6395729321753254 0.054016870181005525 0.14749659659184536 4.615270092616047 0.019458811306443276 0.01656809139741955 281.4544925894966 -2.4494081852799514 -0.14798468434330625 (ac)S(ph)TGGDFGNPLRK ddPTM_BT-474_Trastuzumab_2h_R1 3 STGGDFGNPLRK 12 1 P20340-2;P20340;P20340-3;F5H3K7;F5GX61 P20340-2;F5GX61 RAB6A Ras-related protein Rab-6A 1 S(0.773)T(0.227)GGDFGNPLRK;S(0.706)T(0.294)GGDFGNPLRK;S(0.81)T(0.19)GGDFGNPLRK 93.938 8.4074e-05 536810000.0 1057340.0 1041790.0 901810.0 958480.0 1006420.0 1210010.0 1120740.0 1044710.0 1529020.0 1252100.0 True False 1051647.3989215174 1076465.3503746449 1028777.0093269616 1079823.4697248305 1134581.6214813082 1126364.856757162 1066525.5245574357 1122671.5651298887 1152213.5088183049 1172189.9060232595 0.897164694489913 0.9183369903146775 0.877653871647098 0.9212018156581906 0.9679162187383612 0.9609064631672504 0.9098572842822901 0.9577557009841815 0.9829580538935657 1.0 20.160774888472886 4.6228079530439 0.1255799107102703 1.0341220316339825 0.7694392380866044 0.6507463602591144 0.022446459944600712 23.194381609371305 0.500825126541629 0.21036069446730582 1.0868596848596337 41957.34057316781 -4.6228079530439 -0.2646827935473781 (ac)S(ph)YGRPPPDVEGMTSLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SYGRPPPDVEGMTSLK 16 1 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 S(0.567)Y(0.433)GRPPPDVEGMTSLK;S(0.56)Y(0.44)GRPPPDVEGMTSLK;S(0.56)Y(0.44)GRPPPDVEGMTSLK;S(0.908)Y(0.092)GRPPPDVEGMTSLK 82.54299999999998 0.00015408 569558000.0 918480.0 855800.0 745890.0 783450.0 730790.0 853660.0 831940.0 793220.0 1075990.0 935730.0 True False 913535.0057327201 884284.7856579747 850904.8286078982 882634.6896710617 823851.7747683136 794648.4934994896 791695.8838805724 852414.1042895453 810826.6820273156 876010.9102812427 1.0428351919035237 1.0094449455818715 0.9713404463589567 1.0075612978241246 0.9404583494329044 0.9071216855556836 0.9037511686086181 0.9730633423456774 0.9255897072868651 1.0 19.740589312426074 4.035892404701003 0.8988219488100987 0.939854798422604 1.045515057905637 0.5042120110562531 0.03175192916408672 0.770117423615373 0.9360799516770214 0.011758955101057993 0.065214967376796 10861.564979068551 -4.035892404701003 0.10566025948303293 (ac)SAADEVDGLGVARPHYGSVLDNER ddPTM_BT-474_Trastuzumab_2h_R1 3 SAADEVDGLGVARPHYGSVLDNER 24 1 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;; 153.83 4.8185999999999985e-73 1827970000.0 15023.0 10013.0 18552.300000000003 10710.0 18263.1 20710.7 10453.0 32626.5 21712.1 6037.5 False True 14942.117837212203 10346.276652013687 21164.302580517626 12065.884901878962 20588.797531125463 19279.01805674376 9947.348455662222 35061.255104010044 16361.443882234305 5652.181581036193 2.643601877077863 1.8304926166432436 3.744448453589429 2.134730586568836 3.642628467599761 3.410898567276639 1.7599131084246966 6.203136718332817 2.894713067451528 1.0 12.46459209885702 3.2239934119503117 24.793575104335773 3.513294688206159 2.616768664307005 0.0 1.3841631508160201 557.5338852573825 948928.0726903969 0.4000954947425933 0.48021720909757143 1674.9174680978142 -3.2239934119503117 -0.8965260238991539 (ac)SAHLQWMVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAHLQWMVVR 10 0 P46779;H0YKD8;P46779-2;P46779-3;H0YLP6;H0YMF4;P46779-4;P46779-5 P46779 RPL28 60S ribosomal protein L28 0 50.878 0.0082301 59982000.0 43944.0 56168.0 48497.0 56461.0 58111.0 62994.0 55381.0 52915.0 59436.0 70084.0 False True 43707.41038663737 58037.517925727014 55324.956056519324 63608.95681092328 65511.091399118 58639.37305192566 52702.00945403511 56863.78599692558 44788.794201596254 65611.17911806885 0.6661579775602702 0.8845675189175788 0.8432245358212627 0.9694835189054822 0.9984745325370432 0.8937405765319769 0.8032474063481868 0.8666783124655918 0.682639678232238 1.0 16.00165402799246 -4.243824704850729 0.009526720250250776 1.8664595582396588 4.180766797135567e-07 0.07021994129617026 0.10783903791283975 57166.92058258615 46.745948626342845 5196.601109924291 4029.298515335954 5.7039445527640626e-05 4.243824704850729 -1.866459140162979 (ac)SAIQNLHSFDPFADASKGDDLLPAGTEDYIHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAIQNLHSFDPFADASKGDDLLPAGTEDYIHIR 33 1 K7EM18;P41567 K7EM18 EIF1 Eukaryotic translation initiation factor 1 0 ; 100.68 2.2953999999999992e-88 589140000.0 205969.0 210234.0 177859.0 220790.0 194639.0 222186.0 253407.0 202186.0 364220.0 269880.0 False True 204860.08578930728 217231.51160086316 202900.0012218586 248741.99136189144 219425.12293426244 206826.80478958544 241148.73530125298 217274.14599970487 274462.8612979575 252656.0273441075 0.8108260386374869 0.859791527177788 0.8030681213297035 0.9845084400979467 0.8684737318196415 0.8186102147006986 0.9544547099714267 0.8599602720096049 1.0863103650567176 1.0 17.94681507163286 1.2447802265576735 24.998559903895107 1.04315520484749 0.872973537826457 0.5788065906706369 0.05905233442307675 89.84181237695672 361113.51764646417 0.040232870483344674 0.013880750017930847 17.570342469457238 -1.2447802265576735 -0.17018166702103288 (ac)SCINLPTVLPGS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SCINLPTVLPGSPSK 15 0 P04183;K7ERV3;K7ES52;K7ERJ1;K7ENW5 P04183 TK1 Thymidine kinase, cytosolic;Thymidine kinase 1 SCINLPTVLPGS(0.711)PS(0.288)K;SCINLPTVLPGS(0.846)PS(0.154)K 70.529 1.0833e-06 419620000.0 948100.0 741790.0 605040.0 602770.0 560660.0 1042010.0 1046130.0 798620.0 1293410.0 1065640.0 True False 942995.5349438137 766480.0317284749 690224.3728980437 679080.6201965999 632056.7277078268 969978.3013276986 995524.6952953135 858217.0797101889 974666.4363060533 997629.9428596958 0.9452357977956505 0.7683009488782664 0.6918641304204671 0.6806939036432912 0.633558297073605 0.9722826668045528 0.9978897510249667 0.8602559354324497 0.9769819393273043 1.0 19.92814524129536 2.724283926776904 24.941916588806148 0.9483169755269615 0.7388787893567831 0.6118962059478651 0.08626501764064917 573.4741936883338 1001879.6784456078 0.029284489639942887 0.0277277952731051 530.0098328280259 -2.724283926776904 -0.2094381861701784 (ac)SDEFSLADALPEHS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK 135.18 7.226299999999998e-73 3260260000.0 1908060.0 1524820.0 1412180.0 1348870.0 1331700.0 1915790.0 1959960.0 1640940.0 2634720.0 1983130.0 True False 1897787.216965396 1575572.7119268435 1611002.669111399 1519636.8036972426 1501284.1013956969 1783355.9465845725 1865149.247025708 1763395.2753244815 1985428.5594392233 1856564.945556987 1.0222035170420831 0.8486493918230029 0.86773299957362 0.8185206810749823 0.8086353806197162 0.9605674990537694 1.0046237550101678 0.9498160996438755 1.0694096989122974 1.0 20.82420435313743 2.55456477114885 5.409878189070186 0.9949928491152304 0.8688357385037743 0.509358783709048 0.0615179184440324 0.19040591998496562 9.769990442888684 0.020373131579917218 0.01896943708827066 358.562420676302 -2.55456477114885 -0.12615711061145618 (ac)SDKPDMAEIEK ddPTM_BT-474_Trastuzumab_2h_R1 6 SDKPDMAEIEK 11 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 ;;;;; 123.35 1.7867e-05 4086910000.0 7462160.0 5582950.0 4934860.0 4396840.0 4381490.0 6843760.0 6683210.0 6112410.0 8746300.0 6414630.0 False True 7421984.559683918 5768775.115785463 5629645.393427937 4953479.493181835 4939446.780374136 6370666.979678172 6359917.599958506 6568549.072389069 6590891.559415532 6005242.821558952 1.2359174774813155 0.9606231233607132 0.9374550806201188 0.8248591506406262 0.8225224070276417 1.0608508546577564 1.0590608554788599 1.0938024102552248 1.0975229071094492 1.0 22.517791151704092 2.520421955087654 24.250561535165932 1.0709442245765362 0.9475220626044639 0.18532289073135644 0.10978124685591338 516.2093874453707 289102.20515730436 0.036968147350542054 0.034851125024284405 331.45300068092587 -2.520421955087654 -0.12342216197207223 (ac)SDKPDMAEIEKFDK ddPTM_BT-474_Trastuzumab_2h_R1 16 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 ;;;;;;;;;;;;;;; 118.51 4.4285e-06 187971972000.0 126859940.0 96287200.0 78861900.0 76958090.0 71036650.0 127980510.0 128517020.0 109843860.0 204226170.0 115142020.0 False True 126176940.17850442 99492061.24515839 89964970.04007703 86700976.30330929 80082746.31028815 119133518.57741533 122300160.75990736 118040966.60901915 153897366.8939734 107793557.70555721 1.170542496826779 0.9229870816299178 0.834604330305344 0.8043242856881742 0.7429270172994721 1.1052007291830344 1.1345776441851523 1.095065133033768 1.4277046807783333 1.0 26.683695716929805 2.579481696281762 5.897234428091103 1.157814432579379 0.888896204505178 0.43915364278905733 0.14641510900592136 0.22345188151616807 10.742440529031768 0.048430166680663585 0.045393669230235856 379.7359343332181 -2.579481696281762 -0.26891822807420107 (ac)SDSGEQNYGERES(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 8 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(0.999)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R 103.14 1.0772999999999999e-16 9054651000.0 22925.61 13339.440000000002 34631.770000000004 47235.8 33051.9 19968.500000000004 20717.6 14780.899999999998 8463.2 14133.97 True False 22802.181063034735 13783.435196538248 39507.62219125893 53215.84743680433 37260.8635510404 18588.12459579289 19715.41053908232 15883.925813889386 6377.557761069883 13231.927933899497 1.723269743981658 1.041680038267577 2.9857797282920884 4.021775791301596 2.8159814455745367 1.404793367123101 1.489987750656689 1.20042414780658 0.481982504207185 1.0 13.691735661728035 2.6162331821298963 4.069225919303268 1.1246309553943512 2.5416526413592258 0.45424292266545485 0.7727564837937244 0.2580030231379419 7.290689949615713 0.29279077578343665 0.2738516712856855 413.26933570390014 -2.6162331821298963 1.4170216859648745 (ac)SDVEENNFEGRES(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 SDVEENNFEGRES(1)R;SDVEENNFEGRES(1)R 137.8 1.9867e-08 1121110000.0 28005.0 45801.0 35539.0 43736.0 33184.0 37662.0 38172.0 36040.0 44022.0 32978.0 True False 27854.224191647994 47325.45859771081 40542.58228947438 49272.973115646884 37409.78570302233 35058.51458681183 36325.47452879922 38729.48780741184 33173.367964578225 30873.31580611375 0.9022103219030365 1.5328919930375307 1.313191707171468 1.5959728273141787 1.211719076044763 1.1355603916009984 1.1765977699617802 1.254464795768466 1.0744996803358906 1.0 14.91407281683168 3.0172942423257876 24.982343580259876 1.1585852582078604 1.3554110383962097 0.2098125445003588 0.18406791524318672 368.662072530948 532546.0160473203 0.05059579247739499 0.0604617464807839 1040.6249691842986 -3.0172942423257876 0.1968257801883493 (ac)SEGES(ph)QTVLSSGSDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEGESQTVLSSGSDPK 16 0 F8W6G1;Q9UHY1;C9JHZ6;C9JDW7 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 S(0.377)EGES(0.518)QT(0.096)VLS(0.004)S(0.004)GS(0.001)DPK 53.252 6.9117e-20 216320000.0 279500.0 263290.0 213670.0 218740.0 231470.0 312280.0 259920.0 257420.0 360390.0 305440.0 True False 277995.203055369 272053.44848783384 243752.8787470663 246432.4615720826 260946.33246982234 290692.8186280493 247346.67660917644 276629.98755227367 271576.71347858664 285946.55769965996 0.972192864609888 0.9514136161540417 0.8524420811636026 0.8618130029420377 0.9125702878504443 1.0165984195318571 0.8650101564396996 0.967418491684828 0.9497463989891199 1.0 18.125386012537824 2.969341683714802 24.85818063568195 0.952077531434123 0.9057389644026423 0.18563306432476434 0.05055032892273971 1185.8952917252966 961540.2752191632 0.01565862199099688 0.016629465808097647 931.8407182619264 -2.969341683714802 -0.04633856703148065 (ac)SES(ph)GHSQPGLYGIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SESGHSQPGLYGIER 15 0 Q9H0W8-2;Q9H0W8;M0R2N0;M0QZC7;M0QZH1;M0QX70;M0QYR7 Q9H0W8-2 SMG9 Protein SMG9 1 S(0.199)ES(0.771)GHS(0.03)QPGLYGIER 74.392 1.4309e-06 185110000.0 33239.0 29589.0 25896.0 19943.0 31445.0 29022.0 25429.0 30269.0 40379.0 31252.0 True False 33060.04491720009 30573.851978071798 29541.931707932934 22467.781755198135 35449.33436088289 27015.777450439506 24198.90212178653 32527.826482867607 30428.13650087918 29257.470603816666 1.129969345774114 1.044992999978727 1.0097226827283956 0.7679331566094846 1.211633597480518 0.9233804868598336 0.8271016469424312 1.1117784897859324 1.0400125462968013 1.0 14.8365174290988 4.551161070288925 2.4674214414128084 0.9870192919584081 1.1349285415949306 0.11979900847480296 0.12126703550842789 0.8168631821165132 7.9907008658278755 0.030044142913381096 0.21230023611271048 35576.32388792464 -4.551161070288925 0.14790924963652252 (ac)SETAPAAPAAPAPAEKT(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK 142.43 1.9167999999999998e-29 2007830000.0 3389870.0 1584940.0 1597730.0 1536350.0 975710.0 2413770.0 2211700.0 2054250.0 4102220.0 3102710.0 True False 3371619.316569967 1637693.7697835374 1822676.4962818867 1730851.7524744864 1099960.8850137393 2246911.761303402 2104711.6214855174 2207548.5662701367 3091282.8479317613 2904692.3914363235 1.1607491817413258 0.5638097082540724 0.6274938102415046 0.595881256678821 0.3786841209956234 0.7735455113690508 0.724590193333612 0.7599939232045634 1.0642375960516672 1.0 21.469953958824174 1.3721761677606286 2.5785701565927033 1.0396957247958092 0.6698606642829968 0.3265850431831606 0.1907551084613536 0.3054251734116143 3.4508137844133713 0.16021993979216603 0.04953989745202467 23.560047828354836 -1.3721761677606286 -0.36983506051281234 (ac)SETAPAAPAAPAPAEKT(ph)PVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SETAPAAPAAPAPAEKTPVKK 21 2 P10412 P10412 HIST1H1E Histone H1.4 1 SETAPAAPAAPAPAEKT(1)PVKK 93.176 2.1923e-08 918750000.0 1827900.0 769940.0 866400.0 766270.0 523590.0 1418300.0 1193600.0 1165100.0 2525700.0 1777800.0 True False 1818058.7894987797 795566.9874614417 988381.5891161996 863279.7034325673 590266.0829389306 1320256.2593190812 1135861.0080052079 1252045.678257921 1903275.0776460653 1664339.2819488447 1.0923606798308205 0.47800769716249136 0.5938582354187195 0.5186921397551326 0.35465490080109346 0.7932614903934357 0.6824696264304839 0.7522779110229545 1.143561951753876 1.0 20.666518131703686 1.4073960869535904 2.8179106884161076 1.073299958638058 0.6268178481342302 0.42454950737783426 0.19315990478391204 0.23523147072076497 3.2639917038510027 0.1540407855641787 0.04964109038160683 25.55030489272282 -1.4073960869535904 -0.4464821105038278 (ac)SETAPAETATPAPVEKS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 5 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 SETAPAET(0.001)AT(0.03)PAPVEKS(0.969)PAK;SETAPAETAT(0.007)PAPVEKS(0.993)PAK;SETAPAET(0.008)AT(0.174)PAPVEKS(0.817)PAK;SETAPAETAT(0.019)PAPVEKS(0.981)PAK;SETAPAETAT(0.01)PAPVEKS(0.99)PAK 166.21 1.5788999999999993e-54 4671640000.0 4485530.0 2762090.0 2717460.0 2556420.0 1995690.0 4364280.0 4285620.0 3814050.0 7545620.0 4796350.0 True False 4461380.404869235 2854024.495931339 3100054.7474142523 2880062.5098843495 2249829.292118629 4062587.5960100717 4078308.187941751 4098673.7783534746 5686103.057127817 4490242.836638172 0.9935721891178282 0.6356058235077853 0.6903980163654694 0.6414046221252127 0.5010484675263281 0.9047589949615544 0.9082600510299271 0.9127955719700309 1.266324175327894 1.0 22.098362038731604 1.9706354092370724 1.2493750252335536 1.09303610532504 0.695664764509174 0.5294541151687349 0.14764663158061847 0.3560293682585912 1.0283781106704684 0.10916357710786957 0.049741234510166724 93.46207294365948 -1.9706354092370724 -0.3973713408158659 (ac)SETAPAETATPAPVEKS(ph)PAKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK 163.74 9.773099999999997e-30 2256560000.0 2788660.0 1468030.0 1459130.0 1299960.0 1100591.0 2651990.0 2487910.0 2251480.0 5139080.0 2713220.0 True False 2773646.1644092523 1516892.4911071267 1664562.8210146835 1464534.8027120978 1240744.7401360609 2468664.1734129637 2367560.28856085 2419496.8703837865 3872622.5941439397 2540059.976695493 1.0919608945681845 0.597187666836331 0.6553242192258023 0.576574890415538 0.48847064696094916 0.9718920797392304 0.9320883405442034 0.9525353308906691 1.5246185640002299 1.0 21.276431132093105 1.9504806506941432 1.242770086678531 1.2071359822798835 0.6852273619788574 0.4691018411230625 0.21455509834084616 0.39273669797253496 1.1215256444611383 0.15924628706735927 0.07146714807531498 89.22378664509824 -1.9504806506941432 -0.5219086203010261 (ac)SETAPLAPTIPAPAEKT(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SETAPLAPTIPAPAEKTPVK 20 1 P16402 P16402 HIST1H1D Histone H1.3 1 S(0.001)ET(0.001)APLAPT(0.041)IPAPAEKT(0.958)PVK 40.349 0.0025243 0.0 81334.0 40874.0 36996.0 39115.0 24137.0 56203.0 56025.0 51948.0 100830.0 72915.0 True False 80896.106781057 42234.46638114524 42204.715225003354 44066.9549894487 27210.70387879248 52317.81889763118 53314.8567137162 55824.62354659903 75981.7975527787 68261.50227432778 1.185091216656111 0.6187157471485805 0.6182799062257962 0.6455608728380078 0.39862445115020645 0.7664322810737084 0.7810384321671631 0.8178053761877713 1.1130988188250646 1.0 16.058784544643622 1.4896433893519534 1.8804561797611619 1.0583163717350192 0.6891850904411623 0.3189588994028377 0.19153372160047497 0.365099138900708 2.5014272928091406 0.16177666423025566 0.05300338979277103 30.877589509954216 -1.4896433893519534 -0.36913128129385697 (ac)SGYSS(ph)DRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGYSSDRDR 9 1 P17844;P17844-2;J3QRQ7;J3KRX8;J3QR02;X6RLV5;J3QKN9;J3QS79 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 S(0.003)GY(0.002)S(0.056)S(0.939)DRDR 47.894 0.029412 33809000.0 8419.2 14550.0 11197.0 12545.0 12484.0 7271.3 9294.9 6820.1 9339.1 8248.2 True False 8373.871962661055 15034.287954339261 12773.440273931315 14133.195713732164 14073.763401534807 6768.652145799074 8845.270177033844 7329.0504937660735 7037.60394252856 7721.792814360701 1.0844465998993966 1.9469944759951412 1.6542065529362235 1.8302997831601717 1.8226030845273327 0.8765648481543027 1.145494367653033 0.94913845397869 0.9113950751748076 1.0 12.914720130096438 2.737469417027099 24.999990600557187 0.9854925343351651 1.6915084744627067 0.6976868163795878 0.227184048508082 52.25648390838211 1197212.381294893 0.06824908095857846 0.06773600185779281 546.3480747517387 -2.737469417027099 0.7060159401275415 (ac)SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR ddPTM_BT-474_Trastuzumab_2h_R1 7 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR 31 1 P14618;B4DNK4;H3BUW1;H3BTJ2;H3BT25;H3BN34;H3BQZ3;P14618-2;H3BTN5;H3BR70;H3BQ34;H3BU13 P14618;P14618-2;H3BU13 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;; 156.57 3.6105999999999975e-199 25407387000.0 2217212.0 2416428.0 2202365.0 2443829.0 2120690.0 2797864.0 2552711.0 1745499.0 3390597.0 2770958.0 False True 2205274.776947411 2496857.3452184293 2512438.8487002514 2753217.500828569 2390747.3011855828 2604454.247143426 2429226.6166269914 1875756.9988443279 2555029.8010221035 2594113.088103505 0.8501074170824354 0.9625090581705608 0.968515543991583 1.0613328745977615 0.9216048876779701 1.00398639484429 0.9364382099482571 0.7230822000191401 0.9849338537858524 1.0 21.306809943320044 1.9830237090153275 24.77536497350573 0.8613675776349768 0.964939821872939 0.021107353401661255 0.08916824904750491 969.7612580351393 1415277.994717162 0.03486844528288911 0.023122096704464565 96.16647761784266 -1.9830237090153275 0.10357224423796219 (ac)SKS(ph)ES(ph)PKEPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 2 S(0.237)KS(0.816)ES(0.947)PKEPEQLRK 42.059 0.0018312 233940000.0 708510.0 348090.0 312870.0 319030.0 335100.0 518170.0 546990.0 588170.0 1153400.0 484360.0 True False 704695.4608828612 359675.9652251518 356919.3764852094 359419.16528911726 377772.99870668905 482350.12754097686 520530.00399528095 632062.2320667437 869160.024768172 453447.73011854116 1.5540831149350738 0.7932027030571409 0.7871235266563201 0.7926363755204094 0.8331125587681979 1.063739204108222 1.1479382725307787 1.3939031779947575 1.9167810687704943 1.0 18.790576732258067 1.9211186299499603 1.9788142538813511 1.4952513037651278 0.9360703609205542 0.3228989501175389 0.299305689242995 0.3369744267727435 2.4432631976231924 0.17806658242412882 0.08607236577860203 83.39089403707376 -1.9211186299499603 -0.5591809428445736 (ac)SLHQFLLEPITCHAWNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLHQFLLEPITCHAWNR 17 0 A0A1W2PNV4;E9PF58;F8WFD3;Q92747 A0A1W2PNV4;Q92747 ARPC1A Actin-related protein 2/3 complex subunit 1A 0 ; 136.48 8.130999999999998e-36 3451600000.0 36048.0 35828.0 62251.0 64038.0 94146.0 86809.0 87207.0 78255.0 119023.0 79758.0 False True 35853.921573309315 37020.51332151666 71015.3997046081 72145.20423403598 106134.93505293933 80808.09815640557 82988.46424690855 84094.78547083835 89691.3764764888 74667.77615574076 0.48017931454829754 0.49580307901898546 0.9510849707976491 0.9662160566233652 1.4214289016933477 1.0822352334139085 1.111436131080329 1.1262527130235525 1.2012059431020428 1.0 16.18819814317478 4.115555144530466 1.8225640213845085 1.1477320059565255 0.4359275784050084 0.8219872394686409 0.11771927842213169 0.13680544435690975 0.8617690193496453 0.03113561768022548 0.11012906818658574 13048.336393388403 -4.115555144530466 -0.7118044275515171 down (ac)SLICSISNEVPEHPCVSPVSNHVYER ddPTM_BT-474_Trastuzumab_2h_R1 4 SLICSISNEVPEHPCVSPVSNHVYER 26 0 Q9UMS4;F5GY56 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 0 ;;; 127.16 1.4615999999999996e-45 5084700000.0 0.0 11010.0 0.0 8917.1 0.0 10683.0 14377.0 7426.0 8728.4 20977.5 False True 0.0 11376.461194314452 0.0 10046.003945709142 0.0 9944.509355077027 13681.529584526525 7980.165828463933 6577.402774567814 19638.697990258675 0.0 0.5792879548306861 0.0 0.5115412412112164 0.0 0.5063731495850576 0.6966617436305061 0.40634902743666157 0.33492051142241624 1.0 14.261411664331233 -4.999999998114798 0.12195363642791962 3.1583141948132516 0.03746548828029237 0.470365273446685 0.22876004022644778 130.43825078118454 1.0265922760394557 69.0774386035697 1.9760055297481778 1.0000000043408384e-05 4.999999998114798 -3.1208487065329593 (ac)SLQYGAEETPLAGS(ph)YGAADSFPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQYGAEETPLAGSYGAADSFPK 23 0 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 SLQYGAEET(0.002)PLAGS(0.505)Y(0.452)GAADS(0.041)FPK;SLQYGAEET(0.001)PLAGS(0.515)Y(0.463)GAADS(0.022)FPK 60.278 7.4033e-12 39399000.0 52528.0 44351.0 45142.0 41370.0 44592.0 50436.0 45324.0 46216.0 62045.0 53587.0 True False 52245.19508440946 45827.19622425435 51497.60121870205 46607.43775823834 50270.5268825088 46949.47803357343 43131.50496550601 49664.87260009282 46754.84111040513 50167.03178186113 1.0414248806185047 0.913492279621456 1.0265227857734651 0.9290451538153423 1.002063010247401 0.9358631827715375 0.8597579612254646 0.9899902552745831 0.9319834052312869 1.0 15.61445196066004 2.717640580179449 23.939846870756778 0.9398553828396835 0.9781502535483872 0.12222077395734565 0.05111922197341725 1017.7135699788929 1164617.667412614 0.015566292761508062 0.014690986986146983 521.9640355195066 -2.717640580179449 0.03829487070870374 (ac)SLYPS(ph)LEDLKVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLYPSLEDLKVDK 13 1 B4DHN5;E9PBU7;O00560-2;O00560 B4DHN5 SDCBP Syntenin-1 1 S(0.049)LY(0.04)PS(0.912)LEDLKVDK;S(0.004)LY(0.004)PS(0.992)LEDLKVDK 67.93 0.040709 99944000.0 305412.0 234663.0 197540.0 197030.0 182925.0 273542.0 283072.0 269478.0 460390.0 250078.0 True False 303767.69572646316 242473.616098221 225351.91495153971 221973.97779805912 206219.41446858022 254632.68538860627 269378.7259199477 289587.816741557 346933.0534099353 234117.80793745257 1.297499316274217 1.0356906133471093 0.9625577692566865 0.948129404395253 0.8808360896821409 1.0876263007580975 1.1506118577358093 1.2369320355968987 1.4818738329491907 1.0 17.836875150219203 2.070613983179783 2.1250888744952094 1.2627985211288177 1.0179649375684308 0.2720648096013426 0.15016014308808737 0.3736350138647065 3.2329604412595248 0.07943944659784932 0.044926248428854426 117.65597392940754 -2.070613983179783 -0.24483358356038698 (ac)SNGYEDHMAEDCR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNGYEDHMAEDCR 13 0 Q15717;M0QZR9 Q15717 ELAVL1 ELAV-like protein 1 0 ; 68.069 8.1326e-06 334850000.0 25050.0 29812.0 27550.0 36289.0 25927.4 30525.4 19456.4 17853.4 23282.0 27218.4 False True 24915.13358331664 30804.274398265432 31428.80053110721 40883.183679204994 29229.10070626029 28415.25094706244 18515.2196013342 19185.711365728264 17544.463062816536 25481.298409155388 0.9777811626100135 1.2088973608659404 1.2334065567010075 1.6044387936101299 1.1470805073166257 1.1151414064855065 0.7266199431455076 0.7529330357370985 0.6885231192344908 1.0 14.637151172085723 2.3835714599853923 2.8949078116328657 0.7651697726516272 1.2493554788472334 0.6080150360965962 0.16693846810320648 0.16740949176771028 2.851802025772974 0.06498077573348239 0.05235407941459385 241.86412749494178 -2.3835714599853923 0.4841857061956062 (ac)SQAEFEKAAEEVRHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQAEFEKAAEEVRHLK 16 2 P07108;P07108-6 P07108 DBI Acyl-CoA-binding protein 0 101.42 2.0749e-11 54222000.0 75381.0 126990.0 79129.0 68227.0 68918.0 109600.0 97649.0 106010.0 202430.0 88762.0 False True 74975.1570716164 131216.78538292405 90269.67539840241 76864.5312045281 77694.29879101046 102023.60997064892 92925.34481459486 113921.00450787252 152543.8389230286 83097.13316702863 0.902259250278987 1.5790771640601964 1.086315158634374 0.9249961854884603 0.9349816994870538 1.2277632943795702 1.118273775195242 1.37093784305274 1.835729261759359 1.0 16.342511084739353 1.6409292507364805 4.197754215646387 1.4700634457972306 1.118177064277018 0.19743416440660055 0.26453193811361114 0.23349298841749508 9.489551076983766 0.14566466307862125 0.06678254367200877 43.745083590015426 -1.6409292507364805 -0.3518863815202127 (ac)SQPGQKPAAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQPGQKPAASPR 12 1 P20810-6;P20810-10;P20810-7;P20810-9;P20810-5;F8W7E0;E9PSG1 P20810-6;P20810-5 CAST Calpastatin 1 SQPGQKPAAS(1)PR 54.556 0.006707600000000001 248960000.0 200050.0 161130.0 157810.0 146670.0 158990.0 195570.0 171250.0 165350.0 227940.0 159970.0 True False 198972.95302764428 166493.11464485803 180028.27629089064 165238.40696158615 179236.43409243957 182050.70622226075 162965.98326147083 177689.256630287 171767.2412395158 149760.57764279246 1.328607008329206 1.1117285821504765 1.2021072509501962 1.10335049158071 1.1968198635020804 1.215611672228498 1.088176780742498 1.1864888572619543 1.1469456377846874 1.0 17.19229837911276 -4.999999999720048 0.1612408568262162 0.3616020556613359 1.2179100212025198 0.4463237502623869 0.06304151322173121 123.02564451913508 1.135462761079515 25.153100127337755 0.24414419734753032 1.0000000006446135e-05 4.999999999720048 0.8563079655411838 (ac)SQPGQKPAAS(ph)PRPR ddPTM_BT-474_Trastuzumab_2h_R1 8 SQPGQKPAASPRPR 14 2 P20810-6;P20810-10;P20810-7;P20810-9;P20810-5;F8W7E0;E9PSG1 P20810-6;P20810-5 CAST Calpastatin 1 SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;S(0.002)QPGQKPAAS(0.998)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR 104.76 3.534e-06 23490750000.0 5646950.0 5035980.0 4966380.0 4652280.0 5220510.0 6568070.0 5801990.0 5256530.0 6929110.0 5401890.0 True False 5616547.448635126 5203599.549985808 5665603.135451188 5241258.170990988 5885311.004112974 6114034.78047372 5521325.577945815 5648798.960718491 5221523.685817053 5057136.75540929 1.1106180671557817 1.0289616044928698 1.120318355913761 1.0364082334504312 1.1637634671077146 1.2089913870598685 1.091788860967624 1.116995492494115 1.0325059294138978 1.0 22.269889361766655 1.1216968468675617 3.6825747035964294 1.0011515112417704 1.109756972441706 0.36306970623102486 0.05026560556609588 0.24078192714298377 5.722577076824802 0.049292509077603484 0.012885517619250466 13.23417419851253 -1.1216968468675617 0.10860546119993564 (ac)SQPGQKPAASPRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQPGQKPAASPRPR 14 2 P20810-6;P20810-10;P20810-7;P20810-9;P20810-5;F8W7E0;E9PSG1 P20810-6;P20810-5 CAST Calpastatin 0 50.897 0.08224 46653000.0 27121.0 29246.0 30077.0 31077.0 26072.0 29754.0 30526.0 26839.0 32687.0 35854.0 False True 26974.98354942638 30219.43543041965 34311.5801660295 35011.345013603386 29392.11465914894 27697.17601338217 29049.340759355688 28841.86246568053 24631.72683335985 33565.76702384624 0.8036456765687032 0.9003052249320195 1.0222194577485273 1.0430670328114404 0.8756574708472417 0.8251614209711094 0.8654454622984802 0.8592642153891585 0.7338347673050538 1.0 15.034702989901595 3.017696654192436 24.94853375204209 0.8499132490599205 0.9468101108549752 0.17928194152549426 0.08634368200984203 365.47749323657933 515242.05458620324 0.025091489487296552 0.02998499619528004 1041.5896462008222 -3.017696654192436 0.09689686179505475 (ac)SRPS(ph)STGPSANKPCSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPSSTGPSANKPCSK 16 2 O43255 O43255 SIAH2 E3 ubiquitin-protein ligase SIAH2 1 S(0.009)RPS(0.453)S(0.453)T(0.072)GPS(0.012)ANKPCSK 67.995 0.0071926 355460000.0 98046.0 91214.0 75234.0 75792.0 79885.0 100020.0 100270.0 98382.0 133180.0 110760.0 True False 97518.13122993469 94250.00284997263 85826.29325434931 85387.25942887107 90057.88123450888 93105.85282175442 95419.55703140252 105723.76441367345 100359.57352056973 103691.20197359315 0.9404667838142088 0.9089488891639534 0.8277104674339346 0.8234764165489805 0.8685199854992881 0.8979146836919252 0.9202280927913522 1.0196020723204455 0.9678697093908518 1.0 16.661933963500815 2.0127228539208075 2.311010904715386 0.9973737392482838 0.8727101674234684 0.6855790342991259 0.035491065314051065 0.17950130426452052 1.8029800869537462 0.020615676192430717 0.011325366417977746 102.9728786796311 -2.0127228539208075 -0.12466357182481536 (ac)SRPSS(ph)TGPSANKPCSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPSSTGPSANKPCSK 16 2 O43255 O43255 SIAH2 E3 ubiquitin-protein ligase SIAH2 1 S(0.012)RPS(0.095)S(0.439)T(0.439)GPS(0.014)ANKPCSK 57.989 0.0022293000000000005 0.0 44296.0 35718.0 28085.0 27811.0 32503.0 44479.0 35357.0 36183.0 54074.0 45863.0 True False 44057.51525774824 36906.85203801306 32039.123880803865 31331.869748473946 36642.06438962555 41404.27142230372 33646.64683314349 38883.1591935511 40748.18725447734 42935.984074710235 1.0261210079891612 0.8595785757185335 0.7462068139641234 0.7297345204422311 0.8534115423060288 0.964325665629527 0.7836468071768671 0.9056077328026985 0.9490451455258125 1.0 15.389899637666375 1.253102835833926 1.9699496357959683 0.9957540352279634 0.8473008384404624 0.2439676217768788 0.08657636994899369 0.44835799816048655 3.016494584948136 0.0826018819018386 0.024195397214745618 17.910298986790515 -1.253102835833926 -0.1484531967875009 (ac)SS(ph)SPVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPVKR 7 1 P37837;F2Z393;E9PM01;E9PKI8 P37837 TALDO1 Transaldolase 1 S(0.162)S(0.419)S(0.419)PVKR 45.081 0.093913 1555400000.0 1673900.0 1521200.0 1369200.0 1370000.0 1323200.0 1538200.0 1812900.0 1558100.0 2241100.0 1741300.0 True False 1664887.9083877725 1571832.2224151806 1561971.4587002543 1543441.8595307353 1491701.6767791447 1431867.854533322 1725203.101049461 1674373.3338714857 1688810.9342014499 1630168.7431980656 1.021297896511986 0.9642144280913887 0.9581655060052116 0.9467988304712619 0.9150596728119837 0.8783556061345423 1.058297251893664 1.0271165735804133 1.0359730802397427 1.0 20.636589878795725 2.2192348622301474 24.999985654556365 1.0329357835040465 0.947086996997924 0.5513081595048261 0.03666640612788859 188.0073724178181 243206.65551479417 0.014385875697573968 0.010640464433952702 165.66656299172266 -2.2192348622301474 -0.08584878650612249 (ac)SSDASQGVITT(ph)PPPPSMPHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSDASQGVITTPPPPSMPHK 20 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 S(0.006)S(0.006)DAS(0.006)QGVIT(0.06)T(0.921)PPPPS(0.002)MPHK 48.527 0.00037267 0.0 70592.0 75366.0 69345.0 60245.0 67150.0 80282.0 77107.0 51675.0 68647.0 65283.0 True False 70211.9405155085 77874.51175029085 79108.17324245482 67872.01082294088 75701.1544707675 74732.29430350024 73377.03983265534 55531.25090033316 51729.866672672724 61116.58304841173 1.1488197967463616 1.2741960997493071 1.2943814803879263 1.1105334663290654 1.2386352556850737 1.2227825996800772 1.2006076938976094 0.9086118387270716 0.8464129388859388 1.0 15.899276265905552 1.7399198089940966 4.65134292310931 0.9058712556524792 1.2172198808261185 0.8255083437478236 0.061954553319390704 0.0643619390805626 3.206357141142485 0.03134412276677239 0.015937185950751633 54.94394123631296 -1.7399198089940966 0.31134862517363937 (ac)SSS(ph)PVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPVKR 7 1 P37837;F2Z393;E9PM01;E9PKI8 P37837 TALDO1 Transaldolase 1 S(0.052)S(0.052)S(0.895)PVKR 50.703 0.032915 14093000000.0 15634000.0 14738000.0 13164000.0 12270000.0 12659000.0 15309000.0 17190000.0 14409000.0 20510000.0 17229000.0 True False 15549828.281100703 15228545.420690859 15017376.776460802 13823380.741928553 14271048.614228532 14250724.863509705 16358454.027822953 15484272.747419467 15455585.319919558 16129430.469510976 0.9640655515081032 0.9441465059461934 0.9310543732370303 0.8570284467302497 0.8847831695734519 0.8835231281381859 1.0141991100519572 0.9600012087648704 0.9582226321713486 1.0 23.943192162015794 2.2432289383967228 24.999877614699553 0.9788836747927842 0.9095825447672617 0.5279787704304612 0.03340157906655402 105.38105622677321 564341.7006700933 0.012900745216781011 0.010463898449335625 175.07693637234698 -2.2432289383967228 -0.0693011300255224 (ac)SSS(ph)PVNVKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPVNVKK 9 1 Q00839;A0A1X7SBS1;Q00839-2;A0A1W2PPS1 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(0.015)S(0.061)S(0.924)PVNVKK;S(0.204)S(0.204)S(0.592)PVNVKK;S(0.311)S(0.311)S(0.378)PVNVKK 59.757 0.026865 18197900000.0 12200200.0 11488200.0 10362300.0 10055200.0 9683000.0 13452800.0 13774700.0 12230800.0 18411900.0 13861500.0 True False 12134515.47876965 11870577.792236462 11821221.769273765 11328187.28901711 10916072.654362489 12522839.60048491 13108365.136535954 13143524.402743962 13874533.951819953 12976847.20257278 0.9350896476891453 0.9147505250645943 0.910947134133636 0.8729537392388493 0.8411960535528442 0.9650140288314515 1.0101348140969941 1.0128441984073093 1.0691760282936211 1.0 23.62943657931182 2.442618997593906 3.285165907892276 1.0224079468194238 0.8957266337790606 0.8032256563013354 0.029808379289808472 0.10919391797671082 2.4556628774732063 0.011465152508446652 0.0096739817803076 277.0888164294669 -2.442618997593906 -0.12668131304036323 (ac)SVCTLSVPVS(ph)SLSPGRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVCTLSVPVSSLSPGRR 17 1 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 SVCTLSVPVS(0.43)S(0.301)LS(0.269)PGRR 69.729 7.2429e-06 437810000.0 33188.0 31745.0 28025.0 28275.0 35942.0 38922.0 41087.0 33984.0 35845.0 37033.0 True False 33009.31949553343 32801.61313474224 31970.676402333207 31854.612100898932 40519.000655075586 36231.41375253279 39099.464842417816 36520.058647255355 27011.48004839185 34669.52223445358 0.9521134808927282 0.9461224447490348 0.9221550901720147 0.918807357236747 1.1687210565252313 1.0450508520860737 1.1277762807922944 1.0533764613278336 0.7791131318662539 1.0 15.081380335076819 (ac)SVCTLSVPVSSLS(ph)PGRR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVCTLSVPVSSLSPGRR 17 1 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 SVCTLSVPVS(0.122)S(0.092)LS(0.786)PGRR;SVCTLSVPVS(0.007)S(0.027)LS(0.965)PGRR;SVCTLSVPVS(0.341)S(0.22)LS(0.438)PGRR 80.738 6.1396e-07 857800000.0 45463.0 47059.0 39866.2 49799.0 42569.0 44964.0 36880.0 46479.0 59986.0 49869.0 True False 45218.23225941413 48625.330367233786 45479.01443677772 56103.548293993466 47989.90982376923 41855.74451387093 35095.97350471851 49947.49899557974 45203.254071218646 46686.3177250011 0.9685542673501365 1.04153278169536 0.9741401047018781 1.2017128578112153 1.027922358461568 0.8965312869696866 0.7517400218078065 1.0698530410941414 0.9682334412724897 1.0 15.51071218339243 2.85061887717607 6.07109586675965 0.9371465536647139 1.0493094163796983 0.22880867722206655 0.09703020128731976 0.36901557958275527 17.453468179676918 0.03086662224130354 0.032823346849291696 708.9553385621082 -2.85061887717607 0.11216286271498443 (ac)T(ph)T(ph)SQKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed 2 T(0.928)T(0.579)S(0.493)QKHRDFVAEPMGEKPVGSLAGIGEVLGK 67.69 8.8238e-19 2339900000.0 1197200.0 1050600.0 995720.0 1147100.0 1117500.0 1768000.0 1944300.0 1820000.0 2340700.0 1794600.0 True False 1190754.4082214239 1085568.5858988876 1135908.7210466084 1292322.7423851858 1259807.0010585657 1645782.3214243355 1850246.7810527182 1955817.6417727412 1763865.848773074 1680067.0915656413 0.708754081428837 0.6461459731868534 0.676109142753379 0.7692090088979008 0.749855173869611 0.9795932136797251 1.1012933890208443 1.164130677632719 1.0498782207139963 1.0 20.680087415861756 2.6777113326346544 1.8538590786824227 1.1037322036547583 0.6923336404795156 0.9247721046562161 0.05038588500841248 0.0808422071446536 0.5518308300852134 0.019796480379657314 0.018579727609844717 476.11441731913976 -2.6777113326346544 -0.4113985631752427 (ac)T(ph)TS(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed 2 T(0.555)T(0.555)S(0.891)QKHRDFVAEPMGEKPVGSLAGIGEVLGK 81.242 1.6030000000000003e-18 517270000.0 364410.0 352400.0 307570.0 350650.0 366420.0 587020.0 608210.0 502760.0 775500.0 587790.0 True False 362448.0570497568 364129.4209697014 350873.18255363486 395042.2540470452 413081.4150585054 546440.6890964437 578788.5587121709 540278.5041635507 584388.4161676075 550276.7389676635 0.6586650522966331 0.6617205402009535 0.6376304097677907 0.7178974251903814 0.7506794051179759 0.9930288714758027 1.0518136016397794 0.9818305334460079 1.0619900402549063 1.0 19.06979781948556 2.8333597867825877 2.1855224359901264 1.02342327053753 0.6645326232372089 0.9717392309060673 0.028650522334792598 0.04692275163248277 0.4412979655206961 0.010065754389733785 0.010613552570958262 681.3335687196569 -2.8333597867825877 -0.35889064730032105 (ac)TECFLPPT(ph)SSPSEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TECFLPPTSSPSEHR 15 0 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 TECFLPPT(0.455)S(0.455)S(0.075)PS(0.014)EHR 43.184 0.047605 578950000.0 295550.0 240340.0 178920.0 258080.0 177040.0 212250.0 224970.0 228490.0 240840.0 248010.0 True False 293958.7916386917 248339.57161140183 204110.38079948112 290752.90153846133 199584.9946017079 197577.65708275768 214087.34163114234 245541.0840487108 181488.20909065945 232181.78946795623 1.2660716945644068 1.0695910828341495 0.8790972852229253 1.2522640221040617 0.8596065826654891 0.8509610402069266 0.9220677561393714 1.0575380808777783 0.7816642705120804 1.0 17.8248952973098 7.999999990543208 0.6652051795723116 0.9422015611786521 32.268222436583585 0.37609214245166955 0.12551248513625438 260.2487571481938 1.5749970297570624 0.04750104831015245 12046.425897029976 99999997.82249324 -7.999999990543208 31.326020875404932 (ac)TECFLPPTSS(ph)PSEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TECFLPPTSSPSEHR 15 0 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 TECFLPPT(0.011)S(0.167)S(0.563)PS(0.259)EHR;TECFLPPT(0.006)S(0.222)S(0.681)PS(0.091)EHR 86.49700000000001 2.4841e-05 528580000.0 57143.0 59133.0 61552.0 89527.0 65753.0 75057.0 65490.0 59636.0 77556.0 69699.0 True False 56835.34843718416 61101.20615834662 70217.98658042522 100861.10902059 74126.2548014353 69868.4862551733 62321.99850390497 64086.341145472055 58443.36299715658 65250.75014768395 0.8710298089837594 0.9364061872094107 1.0761253536779083 1.545746352222895 1.1360214960542698 1.0707690884325143 0.9551154333528695 0.9821548564640796 0.8956734269702645 1.0 15.993706867103583 2.362482410844416 3.337076473321473 0.9584734623721345 1.123929653327885 0.1565769104147794 0.1691014968563163 0.4926973522819162 10.857900105752949 0.0694901332712019 0.05615615296753647 230.39996609646974 -2.362482410844416 0.1654561909557506 (ac)TSIHFVVHPLPGTEDQLNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSIHFVVHPLPGTEDQLNDR 20 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 0 ; 77.631 4.0721e-08 445200000.0 53572.0 53508.0 64017.9 65824.7 53711.0 64621.3 59607.2 49244.0 51707.4 55271.4 False True 53283.57430440876 55288.98143373092 73031.06386643815 74158.1002708414 60550.77747996122 60154.18163317786 56723.77201438336 52918.837335965276 38964.80411366207 51743.93193177373 1.0297550324290219 1.06851140548483 1.4113937835789574 1.433174818810089 1.170200547569513 1.1625359609797985 1.0962400787241242 1.0227061485342996 0.7530313731287098 1.0 15.659102065635128 1.817614722664721 1.4432800937019168 0.8860674825177169 1.2282955416523016 0.48325148989218636 0.13581074781926203 0.3594187747032838 1.4143066615213762 0.11045024668720037 0.04555887793457864 65.70746655408949 -1.817614722664721 0.34222805913458465 (ac)VDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_BT-474_Trastuzumab_2h_R1 24 VDYSVWDHIEVSDDEDETHPNIDTASLFR 29 0 Q16543;K7EKQ2;K7EQA9;K7EJ06 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 1 VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(0.999)DDEDETHPNIDTASLFR;VDY(0.008)S(0.013)VWDHIEVS(0.977)DDEDET(0.002)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.003)S(0.005)VWDHIEVS(0.991)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.001)S(0.003)VWDHIEVS(0.996)DDEDET(0.001)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYS(0.001)VWDHIEVS(0.999)DDEDETHPNIDTASLFR;VDY(0.001)S(0.001)VWDHIEVS(0.994)DDEDET(0.003)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(0.996)DDEDET(0.003)HPNIDTASLFR;VDY(0.006)S(0.006)VWDHIEVS(0.983)DDEDET(0.004)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.002)S(0.002)VWDHIEVS(0.962)DDEDET(0.034)HPNIDTASLFR;VDY(0.004)S(0.006)VWDHIEVS(0.988)DDEDET(0.001)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.002)S(0.002)VWDHIEVS(0.977)DDEDET(0.017)HPNIDTAS(0.001)LFR;VDYSVWDHIEVS(0.998)DDEDET(0.002)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(0.499)DDEDET(0.499)HPNIDT(0.001)AS(0.001)LFR 231.94 9.710699999999996e-138 10867692000.0 252706.61999999997 273938.10000000003 325962.30000000005 293070.73000000004 272003.02 306743.99999999994 370397.69999999995 337672.16 403350.3 405654.30000000005 True False 251346.07563626484 283055.9640594219 371854.9585248983 330173.45436878107 306640.99230879033 285539.5092777074 352480.1481943784 362870.97124368494 303950.02318211365 379765.0952758808 0.6618461748141287 0.7453448660251294 0.9791709747699793 0.8694149580253713 0.807449120846745 0.7518845539774445 0.9281530940549414 0.9555142791100295 0.8003632428654581 1.0 18.534747785962917 4.423215308860361 5.886865137226874 0.8825622878033567 0.6807832490384316 0.48178113223873165 0.0778858516038196 0.14358273768025018 10.486441176763162 0.0195500970536027 0.05654184618066815 26498.13503035893 -4.423215308860361 -0.2017790387649251 (ac)VDYSVWDHIEVSDDEDETHPNIDTASLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDYSVWDHIEVSDDEDETHPNIDTASLFR 29 0 Q16543;K7EKQ2;K7EQA9;K7EJ06 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 76.899 3.6393e-08 24052000.0 8804.9 8871.4 11147.0 8624.5 12021.0 15280.0 12551.0 12133.0 12194.0 11188.0 False True 8757.49539671635 9166.679186125448 12716.400708539104 9716.360815710097 13551.803095950809 14223.729565251046 11943.860180523918 13038.426070125637 9188.952091228626 10473.9722614713 0.83611978131076 0.8751865058727764 1.214095320389249 0.9276672281682385 1.2938551637950548 1.3580071829646998 1.1403371979950365 1.2448406148723277 0.8773130061677131 1.0 13.354521068722715 4.250676212259833 20.142910233065233 1.1523493641983882 0.8556498143602773 0.3457958067343345 0.14997700455473154 21.25897181814316 35335.41592907184 0.03588890041947941 0.09571128059407287 17810.504122927898 -4.250676212259833 -0.29669954983811087 (ac)VEADRPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEADRPGK 8 1 P38159;P38159-2;H3BT71;H3BR27;P38159-3;H3BNC1;O75526;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA binding motif protein, X-linked-like-1 0 ; 79.116 0.026062 1005300000.0 377480.0 399580.0 382540.0 331440.0 314800.0 388530.0 396570.0 326240.0 500370.0 411030.0 False True 375447.6896219705 412879.77874878887 436398.3069027132 373400.2700166908 354887.914034216 361671.8356012425 377386.3940554828 350585.68541315326 377060.51811448834 384797.7134995129 0.9757014567667014 1.0729787736883514 1.1340979730204808 0.9703806881304753 0.9222713690440504 0.9399012076034603 0.9807396998889926 0.9110908747995902 0.9798928239082836 1.0 18.553740700954553 3.569581925948321 7.0752481659388184 0.9492927017596143 1.0616558547708828 0.5325758653676602 0.044220115730740854 0.17996158933533413 11.913253948919989 0.011508543185072979 0.017854049601752832 3711.777424030176 -3.569581925948321 0.11236315301126842 (ac)VSVINTVDTSHEDMIHDAQMDYYGTR ddPTM_BT-474_Trastuzumab_2h_R1 12 VSVINTVDTSHEDMIHDAQMDYYGTR 26 0 P55735 P55735 SEC13 Protein SEC13 homolog 0 ;;;;;;;;;;; 192.58 3.993599999999999e-82 5177519000.0 91788.1 164805.4 114581.5 132323.2 122243.8 122593.3 130921.6 112840.5 134098.8 136379.69999999998 False True 91293.92306821664 170290.84811203196 130713.57923974817 149075.3035525965 137810.82333423087 114118.71372458707 124588.42203891963 121261.23110244873 101051.94757185907 127675.8307854646 0.7150446760876695 1.333775132414638 1.0237926664396486 1.1676078599644262 1.079380666539748 0.8938161046027754 0.9758183774677543 0.9497587002680687 0.7914728022538424 1.0 16.962125921121135 2.747365907292653 22.735094748963977 0.9261512360275616 1.0824432938274093 0.16998073614946385 0.15378990231187328 293.28885021069897 757264.1874693864 0.04395207835768892 0.04587652465958529 558.9409223991682 -2.747365907292653 0.15629205779984778 AAAERPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAERPK 7 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 0 ; 75.311 0.03996 282230000.0 225750.0 335480.0 290380.0 283540.0 295750.0 265100.0 340310.0 321880.0 461320.0 352080.0 False True 224534.5870831828 346646.24899805774 331262.9799717933 319436.1349279891 333412.00945241255 246774.26097827547 323847.9051895543 345900.3200735218 347633.8673712967 329609.9529691465 0.6812130066478927 1.051686230574797 1.005015100386855 0.9691337656842246 1.0115350172196467 0.7486857079263473 0.982518586809387 1.0494231650398622 1.0546825550617924 1.0 18.33040028152843 2.00224850803276 24.99959404387483 1.0341377672095267 0.9237658771082035 0.19669809411149908 0.1113700138450046 123.58811771355258 1374075.1872980932 0.04136878584416921 0.030357406837153964 100.51908068752793 -2.00224850803276 -0.1103718901013232 AAAIGIDLGTTYSCVGVFQHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAIGIDLGTTYSCVGVFQHGK 22 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ; 343.47 1.1169e-81 1118680000.0 1515110.0 1530860.0 1376450.0 1204880.0 1227320.0 1368890.0 1356830.0 1327230.0 1971370.0 1627440.0 False True 1506952.8161045443 1581813.7496755864 1570242.1956821245 1357417.6844608702 1383611.9271044298 1274261.8563204529 1291194.9493060515 1426274.6421373817 1485552.278504623 1523575.3858785166 0.9890897621948733 1.038224799597618 1.03062980029485 0.8909422513925445 0.9081348648243082 0.8363628528861368 0.8474769028652488 0.9361365741118023 0.9750435011445339 1.0 20.53902945506723 3.7400501850899897 24.946332449070585 0.9053209732503816 1.021205795017177 0.48492341396282435 0.04949815584573093 101.72355565408532 1703590.3383075388 0.013179883084149127 0.022271434678583613 5496.043799643239 -3.7400501850899897 0.11588482176679527 AAALEFLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAALEFLNR 9 0 P31948;P31948-2;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 124.98 0.0011966 215290000.0 89235.0 145510.0 145290.0 109230.0 108990.0 121090.0 124600.0 110760.0 168670.0 121290.0 False True 88754.56867494063 150353.21238734742 165745.56911668123 123058.50680039579 122869.23046565839 112719.33331519955 118572.62198177668 119025.47362788378 127103.53856220555 113549.16835840656 0.7816399711074566 1.324124294004273 1.4596810484205571 1.083746438476537 1.0820795276794453 0.9926918439368246 1.0442403383133032 1.0482284929836898 1.1193700526367218 1.0 16.792957614126735 3.50091674666283 24.720746753067846 1.0502199769917346 1.2136573153173869 0.12231051847906338 0.1646322066092192 1168.6572494198979 1214095.5137570484 0.04327173459988869 0.06657906787645307 3168.9599218727976 -3.50091674666283 0.16343733832565221 AAALEFLNRFEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAALEFLNRFEEAK 14 1 P31948;P31948-2;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 95.651 0.0033597 197190000.0 118480.0 179710.0 167870.0 216050.0 198690.0 186960.0 206330.0 148320.0 233870.0 186070.0 False True 117842.1168443654 185691.53871301105 191504.6368478031 243401.9078478944 223991.99377210403 174035.89525650087 196349.0296428573 159388.39155369942 176235.8721974446 174194.8532974584 0.6764959734093635 1.0659989959400276 1.0993702352433237 1.397296781393746 1.2858703315970599 0.9990874699341082 1.127180429995644 0.9150005785849757 1.0117168725788983 1.0 17.410342473620876 -1.176437723550877 6.694754064323258 0.9999997823113795 1.071109691988767 0.00942563335405655 0.18582077506166045 6.248619936614233e-07 7.707002393089688e-08 0.18615972613056583 0.0438781335536225 0.06661350360981287 1.176437723550877 0.0711099096773875 AAARPLLTDLYQATMALGYWR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAARPLLTDLYQATMALGYWR 21 1 Q6XQN6-3;Q6XQN6;Q6XQN6-2;C9J8U2;G5E977 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 0 160.02 1.9837000000000003e-11 73114000.0 83026.0 112020.0 102350.0 99350.0 97944.0 108970.0 124010.0 88617.0 117860.0 102710.0 False True 82578.9972410557 115748.51798248013 116759.99035785213 111927.69981341502 110416.58784042971 101437.16038778833 118011.16253579564 95230.05052800826 88814.98224308733 96154.95986554504 0.8588116240340299 1.2037706442219211 1.2142898350861924 1.164034595510468 1.1483192130164364 1.0549342491498044 1.2273018750235294 0.9903810543020339 0.9236651168829844 1.0 16.55307365613566 1.597992196040066 6.392093285361505 0.9609807330274358 1.1305491835540988 0.31848448191598433 0.10283977660299272 0.14086366649495777 12.197728338279724 0.05359349413066235 0.02545139598109607 39.62709134877444 -1.597992196040066 0.16956845052666303 AAAT(ph)PESQEPQAK ddPTM_BT-474_Trastuzumab_2h_R1 5 AAATPESQEPQAK 13 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 AAAT(0.964)PES(0.036)QEPQAK;AAAT(1)PESQEPQAK;AAAT(0.986)PES(0.014)QEPQAK;AAAT(0.984)PES(0.016)QEPQAK;AAAT(1)PESQEPQAK 326.12 3.2513e-51 4429380000.0 3849880.0 3625610.0 3651670.0 3271260.0 3475460.0 4152670.0 4108640.0 3811060.0 4993260.0 3894470.0 True False 3829152.673841882 3746286.2371224766 4165793.395115367 3685401.1805901523 3918039.2303346805 3865605.6972337062 3909889.3866710095 4095460.649370554 3762737.9792560535 3645921.5903764837 1.0502564520172464 1.0275279224355534 1.1425899575325755 1.0108284254707716 1.0746361744795772 1.0602547535408016 1.072400842901086 1.1232991571131539 1.0320402910440833 1.0 21.797852104263647 2.217601766157633 8.66931998152904 1.0734311059134707 1.0615368348307737 0.0 0.04493454836536764 1.3525045991092335 474.23414644632453 0.016130859447733032 0.012157572254414566 165.04476975608875 -2.217601766157633 -0.011894271082697028 AAATGNAS(ph)PGKLEHSK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAATGNASPGKLEHSK 16 1 H0Y6H0;Q8NB78 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 AAATGNAS(1)PGKLEHSK;AAATGNAS(1)PGKLEHSK;AAATGNAS(1)PGKLEHSK 195.86 2.8693e-11 1094520000.0 1085890.0 1004230.0 932300.0 919020.0 884650.0 1205350.0 1148540.0 1061330.0 1707170.0 1197220.0 True False 1080043.6888937217 1037655.1884801454 1063559.7363031309 1035367.8377707553 997304.9337686449 1122026.9915887008 1092980.7323511217 1140531.8339245387 1286460.8284060007 1120812.394608391 0.9636257540416353 0.9258063110933917 0.9489186070918996 0.9237655139712388 0.8898054112946358 1.0010836755429835 0.9751683132778045 1.0175938804843763 1.1477931851882195 1.0 20.096113384471412 1.8478294374099264 1.4384463682517132 1.069600283077337 0.9357765818553127 0.5873736338140448 0.043519630901935585 0.26534718708213423 1.0309749595553999 0.031286644578635114 0.013194252764399934 70.44163657602104 -1.8478294374099264 -0.13382370122202436 AAAYDIS(ph)EDEED ddPTM_BT-474_Trastuzumab_2h_R1 2 AAAYDISEDEED 12 0 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 AAAYDIS(1)EDEED;AAAYDIS(1)EDEED 363.35 6.731899999999997e-73 1240430000.0 968630.0 1212390.0 982130.0 1117630.0 1102110.0 1104290.0 1114350.0 1070690.0 1220420.0 1061670.0 True False 963415.0037049099 1252743.6682447675 1120405.3671730075 1259121.8434068146 1242457.1757822426 1027953.031519049 1060444.6332696055 1150590.3246536572 919663.8437901628 993913.3116585832 0.9693149215369904 1.2604154241120522 1.12726668818163 1.266832658982771 1.2500659375503325 1.0342481778452712 1.0669387569626154 1.1576364972249147 0.9252958311379115 1.0 19.922760500978764 2.725496322315142 24.784595355840054 1.0581587262169823 1.1820112046267532 0.3153490362788388 0.0988886452762198 931.706046449704 1767560.8403525995 0.03123379297960116 0.029608947548192023 531.4914987206726 -2.725496322315142 0.12385247840977098 AAAYNLVQHGITNLCVIGGDGSLTGANIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAAYNLVQHGITNLCVIGGDGSLTGANIFR 30 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 248.95 3.2691e-46 265840000.0 187560.0 164970.0 162440.0 170340.0 186740.0 172440.0 218120.0 186500.0 186410.0 195770.0 False True 186550.19779987482 170460.9267235293 185310.1400462091 191905.02653464614 210520.2321053033 160519.62868009738 207568.7023006832 200417.5770278111 140471.75326602667 183275.79099287046 1.0178660083214794 0.9300787943682116 1.0110999332880672 1.047083335420505 1.1486526996546569 0.875836507432352 1.1325483915590233 1.0935300071115637 0.7664501269100571 1.0 17.48365670646223 4.018794629183953 22.752987429097736 1.0252722677747068 0.9731265448065477 0.0015271351458532312 0.11210669134865098 337.7888592801037 408913.82633775595 0.027122758445519837 0.05856568270214638 10442.263047662163 -4.018794629183953 -0.052145722968159114 AACHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 AACHLK 6 0 Q15785;Q8WXU2-3;Q8WXU2-2;Q8WXU2;Q9H3U1;A0A1W2PNX8;Q9H3U1-2 Q15785;Q9H3U1;Q9H3U1-2 TOMM34;DYX1C1;UNC45A Mitochondrial import receptor subunit TOM34;Dyslexia susceptibility 1 candidate gene 1 protein;Protein unc-45 homolog A 0 88.626 0.051089 105540000.0 475430.0 510030.0 464040.0 429870.0 441680.0 410080.0 501500.0 437840.0 720590.0 533530.0 False True 472870.3377052386 527006.0402303544 529372.798492015 484291.4979244362 497925.32995753636 381732.1348244865 477240.5290839567 470513.8441064702 543010.2499113032 499479.6586219857 0.9467259167467209 1.055110115363479 1.0598485631076577 0.9695920335585795 0.9968881041747775 0.7642596214581535 0.9554754049456498 0.9420080197150985 1.0871518800373452 1.0 18.930066399696255 5.132749450416825 11.58270946653376 0.9742126725593608 0.00022973211292920916 0.008568060682494716 0.08561669946024526 1459122.1023505097 1789687.2779097608 0.02117638520043694 36316550.83560245 135753.00456179716 -5.132749450416825 -0.9739829404464316 AADAEAEVASLNRR ddPTM_BT-474_Trastuzumab_2h_R1 3 AADAEAEVASLNRR 14 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;; 203.7 2.3530000000000003e-08 3279300000.0 1165980.0 1794470.0 1471950.0 1828960.0 1639650.0 1576560.0 1795170.0 1411690.0 2213560.0 1909540.0 False True 1159702.4932325555 1854197.8491699775 1679187.7655812448 2060506.1484725054 1848449.7085330428 1467576.1180230498 1708330.7688846395 1517037.4762165726 1668057.7981843548 1787671.5223605575 0.64872236242887 1.0372139545645245 0.939315609482852 1.152620110965173 1.0339985200929027 0.8209428296341417 0.9556178232502405 0.8486108646030104 0.9330896517173037 1.0 20.769650240634668 -0.013405876984160486 9.663676383883525 0.999999999963857 0.93470666986259 0.024103289833600217 0.13055869916845692 0.0 0.0 0.12328534503082586 0.029058634497406744 0.9696033850393446 0.013405876984160486 -0.06529333010126703 AADAVEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AADAVEDLR 9 0 Q9UNF0-2;Q9UNF0;A0A0U1RR22 Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 0 82.279 0.043976 222380000.0 956710.0 843620.0 785070.0 679380.0 605420.0 811230.0 828360.0 500700.0 1115500.0 737130.0 False True 951559.179660474 871699.3817209417 895601.0320492318 765389.4383415992 682516.6483945213 755151.5795300136 788289.0621575011 538064.7765030822 840599.971934192 690085.7323112562 1.3788999469290328 1.2631754880678658 1.2978112575225362 1.1091222474316829 0.9890316759754121 1.0942866142165217 1.142305984964128 0.7797071455179623 1.2181094791205562 1.0 19.396416079656575 3.648581992302448 2.231056785325607 1.0182793587917267 1.3204212890149276 0.543243375766663 0.11245639260597148 0.2290984791835671 2.224274293993148 0.032679078564770474 0.06025705745327528 4452.27511381515 -3.648581992302448 0.3021419302232009 AADEDWDS(ph)ELEDDLLGEDLLSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AADEDWDSELEDDLLGEDLLSGK 23 0 Q96EV2;A8MTF7;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 AADEDWDS(1)ELEDDLLGEDLLSGK 78.975 0.0083179 68935000.0 78350.0 91292.0 75614.0 73546.0 74810.0 85437.0 77218.0 90880.0 103410.0 85462.0 True False 77928.17230550337 94330.5990328207 86259.79395133011 82856.91605915876 84336.61006639044 79530.94128706507 73482.67033859411 97661.92707928923 77925.99112300746 80007.74199230064 0.9740078942985618 1.179018388519181 1.0781430871981255 1.035611229562413 1.0541056148604515 0.9940405679080225 0.9184444968546361 1.2206559596281008 0.9739806321556543 1.0 16.287851989467924 5.088720416011062 11.967577174972673 1.0585093493641429 6.55989709662166e-05 0.057862284536253084 0.08722728896338915 3379330.8687275397 12013647.208039815 0.020644055248944748 88306788.24144398 122664.93018982254 -5.088720416011062 -1.0584437503931767 AADEEAFEDNSEEYIR ddPTM_BT-474_Trastuzumab_2h_R1 6 AADEEAFEDNSEEYIR 16 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ;;;;; 457.5 3.228399999999997e-205 3476240000.0 1711933.0 1915444.0 1678952.0 1673797.0 1720801.0 2003312.0 1910909.0 1768682.0 1957466.0 1962925.0 False True 1702716.1429416377 1979198.3956296514 1915333.847887605 1885699.5285817264 1939934.8073633825 1864827.756729199 1818471.0312887253 1900670.032025215 1475074.7330005704 1837649.4459553564 0.926572881835159 1.0770271772920796 1.0422737873663723 1.0261475782185376 1.0556609758369067 1.0147897145637117 0.9895636163312636 1.0342941284087486 0.802696475242975 1.0 20.809430150522946 1.2700345307033436 24.999432918869022 0.9013480754827421 1.0234586482832657 0.3978614979695245 0.05870303424619857 145.6118297059803 115658.21259323784 0.03530753912191677 0.012889824433728473 18.622351968788575 -1.2700345307033436 0.12211057280052362 AADEEAFEDNSEEYIRR ddPTM_BT-474_Trastuzumab_2h_R1 6 AADEEAFEDNSEEYIRR 17 1 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ;;;;; 340.55 2.744299999999999e-72 7109770000.0 1071256.0 1406856.0 1329639.0 1523146.0 1389534.0 1426116.0 1460270.0 1293494.0 1712527.0 1674823.0 False True 1065488.47672373 1453682.3514975905 1516840.6137706293 1715976.127428324 1566482.9184867225 1327531.9576359668 1389631.1613268794 1390021.0905094435 1290497.6675361234 1567934.3622518887 0.6795491586736201 0.9271321469157625 0.9674133371196241 1.0944183434846186 0.9990742955827043 0.8466757216350226 0.8862814635499615 0.8865301532859299 0.8230559254296163 1.0 20.58043373513204 -0.040369583915168164 8.104917372538763 0.9999999974495501 0.9086348075445307 0.06943096408645544 0.10541493538425777 14206892.4415719 1752873.0338339966 0.10443327634964508 0.025328789980992895 0.9112350497230542 0.040369583915168164 -0.0913651899050194 AADESER ddPTM_BT-474_Trastuzumab_2h_R1 2 AADESER 7 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;H0YL80;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;H0YKP3;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ; 130.04 0.008379799999999998 251330000.0 201404.0 191140.0 164778.0 196020.0 186100.0 142981.0 201230.0 193397.0 232595.0 237720.0 False True 200319.6632420882 197501.97935342984 187977.31012394876 220836.11190161674 209798.7318988809 133097.06001107072 191495.7361267492 207829.2661900671 175275.07886331994 222548.50607766875 0.9001168633869744 0.8874558757294118 0.8446577037832159 0.9923055238328385 0.9427101336086336 0.5980586540743628 0.8604674077655582 0.9338605315891688 0.7875814668562613 1.0 17.76376029074453 4.462158856801069 21.077754173407737 0.8677957491124302 0.8969517081065327 0.007611811988583517 0.11079209899466658 249.16416732662157 351005.2288626958 0.027252232092056617 0.07478254723495102 28984.035756614227 -4.462158856801069 0.029155958994102504 AADGGERPLAAS(ph)PPGTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AADGGERPLAASPPGTVK 18 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 AADGGERPLAAS(0.909)PPGT(0.091)VK 118.51 6.0896e-05 414470000.0 440580.0 397550.0 368420.0 360570.0 390910.0 477250.0 437210.0 433860.0 626230.0 538320.0 True False 438207.9662330401 410782.2114259498 420290.33363595343 406218.12502992485 440690.0713949026 444258.83082565834 416060.4819956071 466236.83629644033 471904.0075520836 503963.9567210603 0.8695224338743424 0.8151023618804434 0.8339690329651501 0.8060459872426216 0.874447597923795 0.8815289762310358 0.8255758699543129 0.9251392487072213 0.9363844403128185 1.0 18.942961030941312 1.3045727534806757 0.822969432973787 1.0011277143475936 0.8365872791774253 0.7965423892950456 0.02646213095183409 0.2296638744442518 0.3414876320313599 0.024347287714074732 0.009378803385445894 20.163817288178066 -1.3045727534806757 -0.16454043517016836 AADHLKPFLDDSTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AADHLKPFLDDSTLR 15 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 ;; 152.71 1.6713999999999996e-06 507360000.0 1124820.0 896090.0 866190.0 823814.0 750716.0 927134.0 929860.0 890063.0 1322440.0 1121448.0 False True 1118764.0940992495 925915.8139521563 988142.0229415513 928108.767932448 846315.2327576575 863043.408818682 884879.1193898459 956484.0207083345 996542.3817881253 1049876.228520062 1.06561522559311 0.8819285443364652 0.9411985871272338 0.8840173181563876 0.8061095296448892 0.8220430040932106 0.8428413705844152 0.9110445543248693 0.9491998720581398 1.0 20.0017878257627 AADKLIQNLDANHDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AADKLIQNLDANHDGR 16 1 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 0 ;;; 214.81 1.0027e-14 1613200000.0 2395910.0 3864720.0 3932190.0 4437810.0 4428230.0 4675680.0 4640150.0 3727540.0 6109660.0 4982040.0 False True 2383010.6867706245 3993354.868927423 4485808.172791821 4999636.290981085 4992138.84232445 4352461.246966818 4415688.217405635 4005707.962864596 4604016.15824962 4664081.941860958 0.510928134727369 0.8561931198262961 0.9617773076692546 1.0719443511719782 1.0703368646933757 0.9331871311913951 0.9467432760505459 0.8588416783403097 0.9871216277157919 1.0 22.153161704363008 4.7336120850516705 2.284284509792478 0.9709437827320597 0.3988556646774393 0.8466145907340428 0.05995853492423135 0.2521962856223752 1.5564995615560984 0.017697671632520333 0.2884727370248592 54151.69874611366 -4.7336120850516705 -0.5720881180546205 AADKS(ph)PESQNLIDGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AADKSPESQNLIDGTK 16 1 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 AADKS(0.997)PES(0.003)QNLIDGTK 155.71 1.4129000000000002e-07 439250000.0 195930.0 128610.0 121000.0 115900.0 117010.0 170360.0 176300.0 149650.0 252510.0 165540.0 True False 194875.13464986937 132890.7061036133 138035.7482491461 130572.92811650534 131910.52992739395 158583.41418430404 167771.69546859732 160817.64290730236 190282.29396064798 154975.09547407585 1.257460974963348 0.8574971720268642 0.89069632657356 0.8425413626433127 0.8511724385384223 1.0232832165657983 1.082571976841673 1.0376999118171464 1.227824982966236 1.0 17.241676867208316 2.5067694586271436 4.674308924117923 1.082005729062026 0.9271171005337925 0.23015625221355107 0.12583031075261844 0.28566311480148404 15.376395790705784 0.04223594524469017 0.03796444919248142 321.19550481657996 -2.5067694586271436 -0.15488862852823349 AADPPAENSS(ph)APEAEQGGAE ddPTM_BT-474_Trastuzumab_2h_R1 2 AADPPAENSSAPEAEQGGAE 20 0 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 AADPPAENS(0.096)S(0.904)APEAEQGGAE;AADPPAENS(0.066)S(0.934)APEAEQGGAE 279.56 1.1956e-44 855670000.0 460930.0 533470.0 463700.0 492880.0 520330.0 480610.0 495220.0 451730.0 560890.0 525110.0 True False 458448.4040941374 551226.2264605756 528984.9294473474 555278.5574638746 586590.9412624636 447386.5619342478 471264.31667588686 485440.3864384611 422666.17504094075 491597.0302307111 0.9325695150741315 1.121296900841488 1.076053956630067 1.129540097512951 1.1932353232222963 0.910067666039978 0.9586394703294243 0.9874762388426948 0.8597817908757088 1.0 18.907116674760147 2.722755667270175 24.989027102393216 0.947474733932653 1.0936099110345536 0.5110460571828235 0.07197084049416445 671.2314857267187 1061275.1954598844 0.022954148657441782 0.02171078798307933 528.1480337287741 -2.722755667270175 0.1461351771019006 AADRLPNLS(ph)SPSAEGPPGPPSGPAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784;O60784-4;O60784-2;O60784-3 O60784 TOM1 Target of Myb protein 1 1 AADRLPNLS(0.591)S(0.407)PS(0.002)AEGPPGPPSGPAPR 173.64 2.1057e-12 575610000.0 100860.0 107440.0 115290.0 117670.0 125440.0 105200.0 98691.0 69269.0 88107.0 92334.0 True False 100316.98096659954 111016.0754511485 131521.82988135586 132567.00993502318 141414.04045886925 97927.77161416283 93916.93929376833 74438.2045208548 66394.21042331314 86441.16506888547 1.1605232401328274 1.2842963808120718 1.5215184776436708 1.5336097081683218 1.6359571316070944 1.132883522984953 1.086483959568631 0.861143003585555 0.7680855570422171 1.0 16.39943089676973 2.2862517668651905 1.960232190839821 0.8803351836806331 1.4261687885614949 0.7169330720474567 0.1478395588304581 0.18189543983177095 1.4213483201767014 0.0742001219036997 0.05058238783099477 193.30886320164655 -2.2862517668651905 0.5458336048808617 AADRLPNLSS(ph)PSAEGPPGPPSGPAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784;O60784-4;O60784-2;O60784-3 O60784 TOM1 Target of Myb protein 1 1 AADRLPNLS(0.023)S(0.969)PS(0.009)AEGPPGPPSGPAPR;AADRLPNLS(0.03)S(0.938)PS(0.032)AEGPPGPPSGPAPR 257.66 6.8645e-53 3285700000.0 301190.0 407280.0 398110.0 400700.0 382800.0 340830.0 348540.0 251350.0 378310.0 311850.0 True False 299568.426505355 420836.06859404105 454160.4275658471 451428.5789153032 431547.3109666391 317269.22432752035 331679.7886479014 270107.0133294382 285080.5695942841 291947.4660117824 1.0261038761448438 1.4414787507594156 1.5556238037274766 1.5462664741782155 1.478167688392345 1.0867339547818373 1.1360940828803612 0.9251904701188167 0.9764789997621656 1.0 18.155349263600773 2.617617257885367 3.2420306152426757 1.0063916123157108 1.4274830679623691 0.6255724607436258 0.148848893969487 0.16963806703280868 3.360804698817875 0.05338510599866004 0.04975712661073889 414.5885062736361 -2.617617257885367 0.4210914556466583 AAEACARPHGPPPDLAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAEACARPHGPPPDLAAR 18 1 Q3KQV9;A0A087X226 Q3KQV9 UAP1L1 UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 0 121.44 2.2973e-05 301870000.0 289510.0 349230.0 318530.0 336380.0 309700.0 353560.0 339960.0 282670.0 433780.0 330050.0 False True 287951.3103275851 360853.9094360071 363376.2552876074 378965.67351018125 349138.45926428447 329119.22939071717 323514.8360266837 303764.2707691757 326880.7313542032 308985.926429979 0.9319237081590489 1.1678651956913066 1.1760284990518948 1.2264819886418379 1.129949390570074 1.0651592879758578 1.0470212665171246 0.9831006683018407 1.0579146277986853 1.0 18.23718160275395 2.476107567717984 2.1856423059909273 1.0155073288890977 1.1368158817873935 0.2985409494737288 0.07509074742694541 0.3630746372502527 3.5127359437308106 0.030452600492435686 0.025163545730791024 299.30058639467785 -2.476107567717984 0.12130855289829579 AAEDDEDDDVDTK ddPTM_BT-474_Trastuzumab_2h_R1 13 AAEDDEDDDVDTK 13 0 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 0 ;;;;;;;;;;;; 372.05 6.045199999999998e-91 60126833000.0 8643274.0 6833262.0 6006463.0 5654474.0 5725700.0 8564825.0 8496814.0 7471675.0 12158893.0 8173593.0 False True 8596739.573142026 7060702.994875889 6852120.781287693 6370329.828633726 6454833.956117258 7972758.807179406 8085790.6458384255 8029249.3288968885 9162496.740968937 7651947.2969749635 1.1234708289928454 0.9227328313757714 0.8954741212078833 0.8325109389020624 0.8435544189737221 1.04192547305328 1.0566971166979904 1.049307975771224 1.1974071939297253 1.0 22.867395506435447 2.5859044573874352 5.462608651349356 1.0729127789497972 0.9173495191520787 0.40877090076537226 0.08797454466568834 0.23219603962570343 9.81857934362997 0.029606337390960153 0.02772087497859793 385.3935636837038 -2.5859044573874352 -0.15556325979771846 AAEDDEDDDVDTKK ddPTM_BT-474_Trastuzumab_2h_R1 12 AAEDDEDDDVDTKK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 0 ;;;;;;;;;;; 281.51 4.0338e-33 106747653000.0 18115680.0 11111734.5 9621574.2 8694341.0 8081748.5 15094224.0 15783162.0 13837281.4 24972899.0 14201406.0 False True 18018147.19172127 11481581.865647156 10976208.21513783 9795043.679149142 9110911.267198706 14050795.822861383 15019670.15652605 14869889.602359213 18818662.661152292 13295060.110644635 1.355251276923157 0.86359758963816 0.8255854523252418 0.7367430908647626 0.6852854512409532 1.0568433467714577 1.1297181081942318 1.118452228016156 1.4154627737324186 1.0 23.664386964245242 2.502958480016485 5.2872747451177755 1.16128970157244 0.8773610431822287 0.30169590784378775 0.19540227333109952 0.22945909566589684 18.406959294635136 0.06682959054076164 0.06021395404063365 318.38931165020904 -2.502958480016485 -0.2839286583902112 AAEEAFVNDIDESSPGTEWER ddPTM_BT-474_Trastuzumab_2h_R1 3 AAEEAFVNDIDESSPGTEWER 21 0 P09496-2;P09496-5 P09496-2 CLTA Clathrin light chain A 0 ;; 315.88 2.4921999999999996e-66 1215220000.0 844748.0 989964.0 866920.0 949850.0 954370.0 1013990.0 955230.0 883950.0 1025620.0 945050.0 False True 840199.9706283255 1022914.3532941248 988974.8005962783 1070100.9126096866 1075903.362505829 943895.2579757145 909021.8755670353 949914.8376071492 772869.6936038962 884736.0999019884 0.9496616795916922 1.1561801913671703 1.1178189752919967 1.2095142412841897 1.2160726375074082 1.0668664453505172 1.0274497397220903 1.0736702590889886 0.8735595774711975 1.0 19.75488766506867 1.772960119181884 1.2582739651868784 0.9552736529232196 1.129744413538235 0.38433571489800933 0.08241013412646418 0.4558068887750768 1.3531350863501055 0.06740431880355927 0.026792393118601578 59.28708793536971 -1.772960119181884 0.17447076061501543 AAEEEDEADPKR ddPTM_BT-474_Trastuzumab_2h_R1 4 AAEEEDEADPKR 12 1 P20962 P20962 PTMS Parathymosin 0 ;;; 193.23 4.928e-06 12828600000.0 5129730.0 4501950.0 3700290.0 3493810.0 3532660.0 4843050.0 5050060.0 4160810.0 6515100.0 4647300.0 False True 5102112.103646579 4651794.684263753 4221258.668502754 3936125.98777159 3982523.311283713 4508261.352813421 4805769.304697359 4471310.770365076 4909540.9028672865 4350705.335246294 1.1727091840288348 1.0692047210318403 0.9702469699120149 0.904709853798629 0.9153741760031795 1.0362139022127563 1.1045954470334876 1.0277208925508523 1.1284471193885983 1.0 22.05281787860102 -0.03972487483121154 8.327350804151425 1.0000000014547197 1.0308225506362003 0.012863984595369193 0.08337795383898478 0.0 0.0 0.08540262877088871 0.02012959264501759 0.9125887804563629 0.03972487483121154 0.03082254918148064 AAEELDMENEFLLPPVFGEEYEEQPRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAEELDMENEFLLPPVFGEEYEEQPRPR 28 1 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 0 ; 123.53 3.9357e-05 69850000.0 18698.5 21724.0 21476.0 26289.0 21344.0 22043.9 24032.0 21113.0 25999.0 24728.0 False True 18597.829353598656 22447.07020756469 24499.634127261656 29617.184704528114 24062.031884200474 20520.057078758997 22869.48034884478 22688.559269641664 19591.894818751272 23149.837869294082 0.8033675854925444 0.9696426529767821 1.0583069421733593 1.2793689904762708 1.0394039051183301 0.8864017620605791 0.9878894391385277 0.9800742189963992 0.8463080791048623 1.0 14.498714469104746 2.783058613315078 15.278404237433051 0.9463373223769412 1.0420937312397045 0.12244392998548126 0.11753788304175003 12.670456470987833 4348.541321214897 0.038190890638501646 0.040499657280505835 606.8182215513625 -2.783058613315078 0.09575640886276326 AAEEPSKVEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAEEPSKVEEK 11 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 0 ;; 145.31 3.3108e-05 3532960000.0 5169500.0 3920390.0 3629380.0 3241680.0 3244000.0 4939320.0 4923720.0 4508120.0 7629500.0 4828980.0 False True 5141667.986385449 4050877.811224205 4140365.1568635185 3652076.355623061 3657104.171305578 4597876.434308621 4685540.853163027 4844538.806169515 5749311.955062232 4520790.362102221 1.1373382914386043 0.8960552219325868 0.9158498459853821 0.8078402365742088 0.8089523907065184 1.0170514591547117 1.0364428513301367 1.071613239751455 1.2717492948265652 1.0 22.108143587939296 2.168025587943675 1.721071884485895 1.1203962300901427 0.9095960661614455 0.38413118283754355 0.10835253079259884 0.3707144600997797 2.145230978213887 0.060618681832521296 0.03518204441260089 147.23992513112015 -2.168025587943675 -0.21080016392869716 AAEEQGDDQDS(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAEEQGDDQDSEK 13 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 AAEEQGDDQDS(1)EK;AAEEQGDDQDS(1)EK 264.03 3.4354e-24 1110250000.0 1786860.0 1324620.0 1169540.0 1044140.0 1109120.0 1223310.0 1475890.0 1427380.0 1938950.0 1377030.0 True False 1777239.7442988078 1368709.175950299 1334201.066176086 1176328.0169419146 1250359.8577307174 1138745.4590619942 1404495.5622526838 1533898.343688775 1461121.7530988823 1289146.7664653056 1.3786170748981499 1.0617171074346674 1.0349489296973642 0.9124857212086663 0.9699127285243576 0.8833326729619043 1.0894768530534746 1.1898554792908107 1.1334021781748813 1.0 20.2979850899657 -0.08688655464660311 14.081527525380828 1.0000003656335343 1.067569371493475 0.023818086458419097 0.13606899865237115 0.0 0.0 0.13748367440767362 0.03240521282536982 0.8186786134519852 0.08688655464660311 0.06756900585994075 AAEEQGDDQDS(ph)EKSKPAGSDGER ddPTM_BT-474_Trastuzumab_2h_R1 4 AAEEQGDDQDSEKSKPAGSDGER 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER 247.32 5.9275e-38 1882290000.0 2042540.0 1226800.0 1079470.0 1062960.0 1181340.0 1877540.0 1782500.0 1821450.0 2934180.0 1727340.0 True False 2031543.1915875284 1267633.29638374 1231449.9930785599 1197530.6270122568 1331776.6466492407 1747750.0790537586 1696273.6651887386 1957375.84813569 2211090.6549976384 1617099.6823498223 1.256288164397803 0.7838931082725404 0.7615176766896204 0.7405422436742515 0.8235587831629674 1.0807930383822024 1.048960483823649 1.210423741652963 1.3673187120936678 1.0 20.62497718245808 2.3813807210293514 1.699118782845332 1.1965384473752732 0.856579496482941 0.39398051078512586 0.166108247587679 0.341937570305368 2.0057259115271404 0.07920130329309577 0.05666987346943846 240.64714909324553 -2.3813807210293514 -0.3399589508923322 AAEEQGDDQDSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAEEQGDDQDSEK 13 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 185.51 7.968600000000002e-07 0.0 345060.0 341820.0 294020.0 275060.0 299440.0 298220.0 317740.0 298770.0 344610.0 329700.0 False True 343202.23529977 353197.2720654464 335415.4603323463 309882.567797463 337571.90908006893 277604.7533343693 302369.7023153268 321065.7345233198 259685.48303742008 308658.26372962864 1.1119165615484716 1.144298771714831 1.0866887420391758 1.0039665358479006 1.093675267271533 0.8993919358580307 0.979626136237809 1.040198083938422 0.8413365639382115 1.0 18.235650891691634 3.5449810349178303 0.8194107075924303 0.9634513042344125 1.142564174567111 0.5271112142591845 0.06262553921011381 0.6282363941057839 0.8293949611349947 0.02822645209538819 0.07533506464397834 3507.365574032058 -3.5449810349178303 0.1791128703326984 AAEINGEVDDDDAGGEWR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAEINGEVDDDDAGGEWR 18 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 0 178.22 2.0911999999999997e-13 266240000.0 77323.0 110020.0 101360.0 90379.0 90920.0 91275.0 78513.0 98110.0 68405.0 85842.0 False True 76906.70155939288 113681.94919150557 115630.60696308628 101820.97213323228 102498.12307493931 84965.37408823887 74715.02624121374 105431.4663924855 51547.5043300389 80363.49006696639 0.9569855850624084 1.4145969655719919 1.4388450136589641 1.2670053534059498 1.2754314551238164 1.0572633669523033 0.9297135574743478 1.3119323999571213 0.6414293889810496 1.0 16.294252599083194 2.7215118262790376 4.154330395366205 1.024485030540577 1.2898203839325009 0.3311570579755796 0.19701627580062317 0.2786446787642579 11.593550821117864 0.0635235686609326 0.06253348208685905 526.6375555731936 -2.7215118262790376 0.2653353533919238 AAELWGEQAEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 AAELWGEQAEAR 12 0 Q08379;Q08379-2 Q08379 GOLGA2 Golgin subfamily A member 2 0 ;;; 190.26 1.5987e-05 760830000.0 479634.0 549137.0 482465.0 478511.0 477083.0 523947.0 516951.0 453289.0 560133.0 506786.0 False True 477051.7038363468 567414.6930846731 550391.8783390435 539090.4435371612 537836.6921575164 487727.77712857194 491944.1051854053 487115.7269349029 422095.72754765983 474442.4835986761 1.0054995501622865 1.1959609704021381 1.160081353095293 1.1362609002636659 1.1336183220313476 1.0280019053713867 1.036888816224842 1.0267118645027304 0.8896668029094636 1.0 18.855873675157415 2.2465310960042504 1.0149399888653357 0.9651943074390599 1.135046163232179 0.5669412212947129 0.058108445390985565 0.3836706193652473 0.7557416183301754 0.04062912390659491 0.023131421723745202 176.41320739205165 -2.2465310960042504 0.16985185579311923 AAEQAHLWAELVFLYDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAEQAHLWAELVFLYDK 17 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;A0A087WV74;A0A087WXH4;P53675;P53675-2 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 125.12 4.797100000000001e-05 88625600.0 170046.0 172216.0 159134.0 129735.0 136686.0 186912.0 175247.0 169388.0 209906.0 182136.0 False True 169130.49122988683 177948.1054532297 181538.68398247595 146159.4376979708 154092.151898605 173991.21338352116 166769.63310144792 182028.59269483553 158177.47889629644 170511.92454552534 0.9918983184353791 1.04361091417814 1.0646685530430837 0.8571801537489971 0.9037030829914984 1.0204049590506314 0.9780526115457793 1.0675417169796553 0.9276622694740877 1.0 17.379513110349766 -0.39750907532935864 8.092317520590418 0.9999955338229252 0.9886011725092919 0.0007214081698162511 0.0666110137048687 0.0 0.0 0.06695672244102631 0.015781850828025065 0.40039710125777334 0.39750907532935864 -0.01139436131363325 AAESET(ph)PGKSPEKKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAESETPGKSPEKKPK 16 3 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AAES(0.033)ET(0.684)PGKS(0.283)PEKKPK 77.87100000000002 0.012033 207940000.0 671470.0 295410.0 235590.0 271130.0 182550.0 496960.0 496830.0 393590.0 1061800.0 448470.0 True False 667854.8801273302 305242.54327088414 268759.02421501087 305455.0302004145 205796.66044137935 462606.32491800765 472796.43482508964 422961.68440952286 800133.6173910573 419848.2606455164 1.5907053636485329 0.7270306248299658 0.6401337087875368 0.7275367289381587 0.4901691390241016 1.1018417087324615 1.1261126438827338 1.007415592860191 1.9057685654356469 1.0 18.67950848525973 1.8510306892493622 1.4058681250299199 1.376492973542041 0.8334476123882092 0.22997359955763597 0.364334232055106 0.5715545806029946 2.1165335616546535 0.26984840746949573 0.11373737985862395 70.96279117699513 -1.8510306892493622 -0.5430453611538318 AAESETPGKS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAESETPGKSPEK 13 1 O76021;J3QSV6;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AAESET(0.013)PGKS(0.987)PEK;AAESETPGKS(1)PEK;AAESETPGKS(1)PEK;AAESETPGKS(1)PEK 176.17 1.0307e-05 2527310000.0 4275150.0 2179150.0 1889230.0 1501670.0 1448410.0 3242460.0 2924390.0 2756250.0 5031440.0 3090100.0 True False 4252133.06741382 2251681.690426007 2155217.162518466 1691781.2680303073 1632856.4281013308 3018316.3721298384 2782926.083445329 2961935.3709539073 3791509.0298418365 2892887.1724322927 1.4698579011080806 0.7783510231174448 0.7450056065292011 0.5848072071915217 0.5644383381632031 1.0433577917911285 0.9619891539376871 1.0238682653024314 1.3106314916022104 1.0 21.464078626104776 2.078166399461307 1.5506254951815261 1.1197177981252662 0.8192367378690317 0.16606617583825523 0.25350162284324446 0.6832856065686596 3.107141440876706 0.16284433724214686 0.0841681896191765 119.71991490020692 -2.078166399461307 -0.30048106025623444 AAESETPGKS(ph)PEKKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAESETPGKSPEKKPK 16 3 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AAESET(0.004)PGKS(0.995)PEKKPK;AAES(0.022)ET(0.142)PGKS(0.836)PEKKPK;AAESET(0.016)PGKS(0.984)PEKKPK;AAES(0.038)ET(0.205)PGKS(0.757)PEKKPK 136.53 1.2073e-05 2472930000.0 3132480.0 1486919.0 1317879.0 1105444.0 928798.0 2517210.0 2366520.0 2102030.0 5592430.0 2464590.0 True False 3115615.075731249 1536410.2000534828 1503424.907990384 1245393.097056273 1047074.919882948 2343201.197574975 2252042.3866156866 2258894.1524920603 4214250.561222706 2307297.756158343 1.35033073534417 0.6658916023962204 0.651595531602991 0.5397626265323708 0.453810054245591 1.01556081841661 0.9760519120710901 0.9790215183380255 1.8264875220263919 1.0 21.13777276476848 1.4941789476887555 3.316877226856783 1.4170340227158347 0.7826847223996396 0.35548373431186264 0.31308903339981875 0.2174219917665797 4.8906230761581435 0.21904381115482086 0.08064159115532818 31.201749632680606 -1.4941789476887555 -0.6343493003161951 AAESLTAIPEPAS(ph)PQLLETPIHASQIQK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAESLTAIPEPASPQLLETPIHASQIQK 28 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AAESLTAIPEPAS(1)PQLLETPIHASQIQK;AAESLTAIPEPAS(1)PQLLETPIHASQIQK;AAESLTAIPEPAS(1)PQLLETPIHASQIQK;AAESLTAIPEPAS(1)PQLLETPIHASQIQK 312.14 6.7451e-83 1039990000.0 486624.0 1106030.0 1316270.0 1432260.0 1358320.0 1558810.0 1550050.0 1447580.0 1182030.0 1531530.0 True False 484004.070453009 1142843.5399407449 1501589.3747760635 1613583.9691470738 1531294.0006065962 1451053.1337440445 1475068.1597339716 1555605.770262296 890734.5448905171 1433786.444191201 0.33757054435399947 0.7970807260529116 1.047289420861494 1.1254004916034037 1.0680070290875148 1.0120427206037532 1.0287920950222527 1.084963368543921 0.6212463149579996 1.0 20.451398726662532 4.668530314146609 2.4008018482450577 1.0136912970321867 0.23656433986841402 0.6911940697921973 0.13350796973457044 0.24097317778548075 1.8944265376320277 0.032539892932684784 0.36305144015641955 46615.49649033845 -4.668530314146609 -0.7771269571637727 AAESTEEVSSLRPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAESTEEVSSLRPPR 15 1 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2;A0A3B3IU50 Q709C8-3 VPS13C Vacuolar protein sorting-associated protein 13C 0 88.706 0.0060583 0.0 172430.0 147670.0 125340.0 115630.0 128500.0 173400.0 174500.0 163730.0 223470.0 176400.0 False True 171501.65603877383 152585.10668159983 142986.7825251899 130268.74614418902 144863.7133208283 161413.2661396944 166058.76834526507 175948.36400409392 168398.8128445842 165142.00097636206 1.0385102216565856 0.9239630486458766 0.865841407272621 0.7888286769810625 0.8772069640936692 0.977421038774979 1.0055513882808906 1.0654367935706353 1.0197212813758283 1.0 17.33334756557877 2.487235603910789 2.6715450330422366 1.0318245539254907 0.8929044161664801 0.4772991323877881 0.060921082656652456 0.23967622038270964 3.4644419745385435 0.024612203727486168 0.021056558336485353 307.0687378538576 -2.487235603910789 -0.13892013775901058 AAETTVVEVEEIVDIGAFAPEDIHIPQIYVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAETTVVEVEEIVDIGAFAPEDIHIPQIYVHR 32 0 P55809;E9PDW2 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial 0 176.26 1.3054e-15 116630000.0 43302.0 38573.0 49158.0 41634.0 49547.0 74375.0 40387.0 29381.0 42147.0 46688.0 False True 43068.86684330449 39856.87898712912 56079.019111004294 46904.86013116982 55856.516761922816 69233.63130991788 38433.326516677516 31573.559413694977 31760.43659086541 43708.33186839221 0.9853697224819016 0.9118828672560648 1.283028125618264 1.0731331562229944 1.2779375092627498 1.5839916178540858 0.8793135055440235 0.7223693530278028 0.7266449034590828 1.0 15.415620698164414 2.0210894070066256 24.94400531217878 0.7893279207233451 1.181471577141996 0.4573164703062368 0.18902601687334605 196.53702465049113 232457.90791109763 0.07367784558278419 0.05440999097127374 104.97585172980936 -2.0210894070066256 0.3921436564186508 AAFAHFPELYDFALSNVAEVDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAFAHFPELYDFALSNVAEVDTR 23 0 O60306;H0YH15 O60306 AQR Intron-binding protein aquarius 0 202.43 2.0821e-24 114160000.0 153050.0 152420.0 134210.0 138630.0 128990.0 145390.0 151370.0 144320.0 192160.0 157800.0 False True 152225.99580545368 157493.2075601643 153105.60142576782 156180.54378594604 145416.11191637095 135339.5315112467 144047.6548104459 155089.8912421109 144804.742812079 147729.06890062307 1.0304403658555221 1.066094904220303 1.0363945468901692 1.057209288247855 0.9843432507801966 0.9161333819973455 0.9750799614620624 1.0498264992547908 0.9802048025462663 1.0 17.172594210034706 3.234997562366211 24.996009202423267 0.9872765048682876 1.048064773660719 0.4836278825055327 0.03193528588152632 94.25839925594646 661253.0923457076 0.010393976075679736 0.012892908071918594 1717.89874480671 -3.234997562366211 0.06078826879243138 AAFDDAIAELDTLSEESYK ddPTM_BT-474_Trastuzumab_2h_R1 9 AAFDDAIAELDTLSEESYK 19 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 ;;;;;;;; 355.13 1.4633999999999995e-90 564034200.0 735638.0 632783.0 587738.0 537504.0 575763.0 746530.0 714112.0 724961.0 933633.0 762602.0 False True 731677.4067450657 653844.7996295992 670486.4016897248 605551.9512884737 649083.0052353314 694924.1382425951 679567.6743872436 779061.2710973674 703551.6571912467 713932.0874635796 1.0248557525191657 0.9158361293894839 0.9391459124239584 0.8481926529452498 0.9091663151622157 0.9733756899924264 0.9518659916261446 1.091226021042387 0.9854601992898065 1.0 19.445427319364327 1.9120255229756742 6.516562772921975 1.033518287279948 0.9318751590038823 0.39430724980586696 0.04997697265796787 0.2218054981668327 13.672827319045465 0.02196408769249295 0.013497361533742576 81.66303623538712 -1.9120255229756742 -0.1016431282760657 AAFFVTLDETEEGYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAFFVTLDETEEGYR 15 0 P50416;P50416-2 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform 0 128.67 0.00016417 21296000.0 16866.0 19464.0 23013.0 19767.0 23470.0 26235.0 18486.0 19104.0 20123.0 22529.0 False True 16775.195329988754 20111.847473763537 26253.030367418174 22269.500173243843 26458.765382411228 24421.43620054719 17591.761556622187 20529.637488146393 15163.956284385242 21091.17993195269 0.7953654268803941 0.9535667297254675 1.2447397657276342 1.0558679146967032 1.2544943178985808 1.1578980540367603 0.8340814318297594 0.9733754846519719 0.7189714531528968 1.0 14.364352187547784 2.2353915241139686 24.98853516429767 0.8878403083853705 1.0861120662422632 0.2992678715004029 0.14594107193475242 107.53658293373364 847920.4687271806 0.054971574152119264 0.042320729833579415 171.9457810094898 -2.2353915241139686 0.19827175785689266 AAFGISDSYVDGSSFDPQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAFGISDSYVDGSSFDPQRR 20 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1;I3L1C0 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 139.88 3.3485e-07 399370000.0 80784.0 120580.0 110140.0 84795.0 98020.0 79374.0 85141.0 112120.0 123390.0 121450.0 False True 80349.06791994619 124593.43240785066 125646.7546459581 95530.03830577273 110502.26598994248 73887.06220629817 81022.40455979506 120486.96373382378 92982.18784129093 113698.95702142389 0.7066825415540645 1.0958186044254914 1.105082737234634 0.8402015357781368 0.9718846054948501 0.6498481968693511 0.7126046419627956 1.0597015741412725 0.8177927949134188 1.0 16.794859494657114 4.793832796863749 22.001683813690146 0.913058266366104 0.7066769703220981 0.14895358846699802 0.15054674327227385 29539.484581280354 11756780.367850041 0.037333847390971044 42.512554538791754 62206.074601641616 -4.793832796863749 -0.2063812960440059 AAFNSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAFNSGK 7 0 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;; 101.28 0.021339 2047030000.0 3104020.0 3109520.0 2636450.0 2563110.0 2504790.0 2490470.0 3139390.0 2872960.0 3923760.0 3133610.0 False True 3087308.3012090456 3213018.493455463 3007639.2435657964 2887599.4631984085 2823760.1594465203 2318309.6708357856 2987525.712065571 3087354.863795277 2956801.923690281 2933620.3269815026 1.0523885019523564 1.0952400567668013 1.025231252968735 0.9843126039999708 0.9625513340889545 0.7902555247226453 1.0183750380334777 1.052404374008397 1.0079020439337596 1.0 21.484250736918696 3.9372722998662497 2.765214271585074 0.9750982877388249 1.0734962909076584 0.2645325568655297 0.06710448330012381 0.4105455741814424 6.1570866804327355 0.01995738313784528 0.04454064628983121 8655.10418190148 -3.9372722998662497 0.09839800316883351 AAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK 41 2 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 125.42 3.4146e-09 181350000.0 126954.0 158399.0 177066.0 175828.0 185730.0 220845.0 290793.0 159106.0 239451.0 236502.0 False True 126270.4937699153 163671.2149607825 201995.35371473807 198087.80677194914 209381.6145920426 205578.50496321113 276726.23165286396 170979.29764389736 180441.50952901324 221408.2398804508 0.5703062082878891 0.7392282014849882 0.9123208504968257 0.8946722438103771 0.9456812208303451 0.9285043098405601 1.2498461294949188 0.772235476584871 0.8149719704489883 1.0 17.756349388577313 4.596149651252905 1.3604810759139279 0.9452219352565607 0.46417480665126676 0.4994770372742844 0.1206043936786939 0.8513779327276879 1.7153412754223865 0.034400376046166754 0.5252089698461996 39459.32494651207 -4.596149651252905 -0.48104712860529397 AAFQSLLDAQADEAVLDHPDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAFQSLLDAQADEAVLDHPDLK 22 0 Q9UBI1;R4GN54;R4GMW6;H0Y4W0;H0Y6Z9;R4GMX3 Q9UBI1;R4GMX3 COMMD3;COMMD3-BMI1 COMM domain-containing protein 3 0 ; 276.36 1.8199e-45 141806000.0 97193.0 92768.0 87089.0 87398.0 82300.0 105384.0 101324.0 94104.0 130744.0 114926.0 False True 96669.72368715741 95855.72680055982 99350.374208842 98462.57783888117 92780.41716968226 98099.05212725236 96422.57102473153 101126.51833042956 98523.89307984231 107591.32428690116 0.8984899510055253 0.8909243141663783 0.9234050688317211 0.9151535078824996 0.8623410649940102 0.9117747437113343 0.8961928079592437 0.9399133155082964 0.9157233980792002 1.0 16.71520222414468 0.48791356031674993 0.6198450754116241 1.0022974882349183 0.8989118025992001 0.7186609328887472 0.01830091936061194 0.9200401173418192 0.5992926710007808 0.023257187857321962 0.00747287659594048 3.075484625579217 -0.48791356031674993 -0.10338568563571815 AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 M0QZ22;Q5PRF9;A0A087WZT0;M0R0X3 M0QZ22 SAMD4B Protein Smaug homolog 2 1 AAFTTPDHAPLS(0.96)PQS(0.04)SVASSGSEQTEEQGSSR;AAFTTPDHAPLS(0.999)PQS(0.001)SVASSGSEQTEEQGSSR 329.68 3.915699999999998e-117 1402310000.0 267900.0 325570.0 377210.0 381580.0 327640.0 320260.0 346210.0 284410.0 338880.0 348070.0 True False 266457.6561664879 336406.4006387794 430317.88923190377 429887.988875721 369363.01192557334 298121.1800109489 329462.4996493652 305634.1184047169 255367.56475935385 325855.8746022806 0.8177162878886548 1.0323778911439792 1.3205773557316498 1.3192580597186272 1.1335165044251383 0.9148866208866636 1.0110681602763387 0.9379426373017055 0.7836825561946354 1.0 18.313874478853084 2.7438447579648493 21.016485722927943 0.9335665690713826 1.1412529768502664 0.30500411277794826 0.1461799849075787 63.480624969504305 252478.07106004813 0.04864045976403056 0.05000960931462462 554.4274929918244 -2.7438447579648493 0.2076864077788838 AAGALGSASSGS(ph)MPNLAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAGALGSASSGSMPNLAAR 19 0 Q9P2Q2 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 1 AAGALGSAS(0.021)S(0.003)GS(0.976)MPNLAAR;AAGALGSASS(0.001)GS(0.999)MPNLAAR 221.91 2.6818000000000003e-19 691830000.0 692180.0 331990.0 338910.0 432640.0 313380.0 410820.0 334280.0 384600.0 615980.0 472940.0 True False 688453.3797884275 343040.0864578067 386625.58214147185 487412.1796404215 353287.08545121574 382420.98036625894 318109.5993263912 413300.8049592286 464179.98270912067 442756.5642956953 1.5549252914715532 0.7747826099506616 0.8732238284405507 1.1008581666446011 0.7979262509934753 0.8637274096084521 0.7184751734452919 0.9334718856549925 1.048386450119614 1.0 18.756154170926465 4.744872436380185 24.975504553162185 0.8935200986005216 1.5549255896584298 0.7398063050653824 0.11622557889400177 349.07537874839124 1381233.42720859 0.027420019423107574 0.2583490881408745 55574.09976648148 -4.744872436380185 0.6614054910579081 AAGARPLTSPES(ph)LSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAGARPLTSPESLSR 15 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 AAGARPLT(0.028)S(0.255)PES(0.497)LS(0.22)R 77.878 0.012528 0.0 173380.0 211710.0 201030.0 202140.0 224750.0 197380.0 212940.0 161390.0 196740.0 214820.0 True False 172446.54134432875 218756.6393686027 229333.27661591617 227730.90327411905 253370.5803023828 183735.58518254256 202639.2786902052 173433.74132181457 148256.0631809349 201110.00368334525 0.8574737118291335 1.087746185480871 1.1403374890142683 1.1323698428880213 1.2598606516925117 0.913607388083194 1.0076041717410926 0.8623824680292487 0.7371889039113603 1.0 17.61762532090056 2.1940574957606045 1.6768122281798723 0.8615932612040206 1.0934430366904757 0.3606811005932915 0.12080892497347828 0.3792490123531753 2.094841500038945 0.06672137790154455 0.03940767179674946 156.3354599707741 -2.1940574957606045 0.23184977548645513 AAGDGDCGTTHSR ddPTM_BT-474_Trastuzumab_2h_R1 5 AAGDGDCGTTHSR 13 0 H0YCY6;Q3LXA3-2;Q3LXA3;I3L252 H0YCY6 TKFC;DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) 0 ;;;; 186.17 8.0371e-06 700070000.0 436089.0 472211.0 463851.0 487077.0 436626.0 412921.0 477735.0 421515.0 516945.0 484633.0 False True 433741.1452780427 487928.25767742307 529157.1889348316 548740.89825887 492227.7330149413 384376.7431814808 454625.1329250736 452970.5897097999 389550.8314581092 453703.30702481355 0.9560017274776463 1.075434651065344 1.166306660634262 1.2094707923935382 1.0849110539721518 0.8471984603816405 1.0020317813116792 0.9983850298120627 0.8586025832886517 1.0 18.79138964990883 2.8945722223434633 7.43908617325097 0.9514097260464549 1.1096675805531302 0.4865071318261821 0.0803681431110643 0.24646993787214078 15.40331012446879 0.02546015482078845 0.027065226650683658 784.4625626623622 -2.8945722223434633 0.1582578545066753 AAGDT(ph)PERK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAGDTPERK 9 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 1 AAGDT(1)PERK 73.632 0.025416 251670000.0 481400.0 375970.0 322250.0 273380.0 281330.0 286750.0 429330.0 417960.0 600980.0 490490.0 True False 478808.19588856754 388483.93417133536 367619.99895278795 307989.87996971695 317155.7079264485 266927.6474368936 408561.6677001303 449150.2975578756 452876.53171941836 459186.5082703845 1.0427314114521613 0.8460264558613358 0.800589721892092 0.6707293755860138 0.6906903887944733 0.5813055101342777 0.8897510278319315 0.9781434982697722 0.9862583581239486 1.0 18.80872072808509 2.0069882173877 24.993388570153805 0.9727659283536773 0.7656379446926003 0.4131300018282982 0.11576726929977701 179.02801274364342 640291.3504929536 0.046857301192960124 0.034530696202356624 101.62211219426322 -2.0069882173877 -0.207127983661077 AAGGAPS(ph)PPPPVR ddPTM_BT-474_Trastuzumab_2h_R1 5 AAGGAPSPPPPVR 13 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR 120.9 0.00026534 4142940000.0 819500.0 854069.0 785017.0 764964.0 740386.0 797299.0 854610.0 800867.0 1047480.0 865390.0 True False 815087.9030550102 882496.1703693874 895540.5701099162 861808.3639664751 834669.7684883656 742183.5967699672 813269.2493727622 860631.7622602247 789342.5895128893 810160.0693023469 1.0060825433631984 1.0892861840615413 1.1053871994470092 1.0637507285549188 1.0302529094122408 0.9160950099763417 1.0038377355145294 1.0622984208556965 0.9743044855229853 1.0 19.627847454500497 3.110806352110876 4.09521823394504 0.9994880552754881 1.0704668609685797 0.4051343829031574 0.04180289126426666 0.24982964718856548 7.65051653855274 0.013303557097712157 0.016160270561899073 1290.6436592326215 -3.110806352110876 0.07097880569309156 AAGGAPS(ph)PPPPVRR ddPTM_BT-474_Trastuzumab_2h_R1 4 AAGGAPSPPPPVRR 14 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR 98.281 0.0016172 2148940000.0 1850380.0 2470660.0 2165910.0 2246410.0 2223520.0 2247310.0 2311650.0 2052990.0 2690430.0 2297470.0 True False 1840417.7596765433 2552894.424554492 2470851.3015727946 2530805.2756703906 2506672.0921644242 2091958.7492987118 2199826.658139441 2206194.5386719895 2027409.5764149786 2150843.497636973 0.855672559020924 1.1869270950486321 1.148782468035168 1.1766571014817504 1.1654367669792725 0.9726224858280228 1.0227739305794603 1.0257345739454442 0.942611388807412 1.0 21.036471122724265 2.7322252382517545 24.976293078846858 0.9994291342732686 1.1173774804737695 0.27067963445596366 0.09236925662937702 670.9416930041009 2645081.7528248024 0.02906084680409902 0.028023011423684827 539.7905016098379 -2.7322252382517545 0.11794834620050088 AAGGGAGS(ph)SEDDAQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAGGGAGSSEDDAQSR 16 0 Q9H4A6;D6REM1 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 1 AAGGGAGS(0.65)S(0.35)EDDAQSR 79.875 0.017973 14766000.0 12738.0 13832.0 13060.0 12665.0 12982.0 14770.0 15362.0 11924.0 17300.0 14153.0 True False 12669.420023324847 14292.389758379428 14898.734480445026 14268.38770142829 14635.180749657542 13748.98466484017 14618.881371461113 12813.829428845136 13036.646808123276 13249.743423007094 0.9562011594372036 1.078691813274049 1.1244545652540405 1.0768803021990905 1.104563332467612 1.0376793139228784 1.1033331668956414 0.9671001935475196 0.9839169251750345 1.0 13.693676802173265 1.710868039148322 7.944727264271645 0.9826099287401461 1.0717623408353802 0.4295163875221589 0.04477931894565697 0.1056363657789855 15.691261487113644 0.021593205903391186 0.011401109652135765 51.38874825858812 -1.710868039148322 0.08915241209523417 AAGGNS(ph)REPS(ph)PLPELALR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAGGNSREPSPLPELALR 18 1 Q13207 Q13207 TBX2 T-box transcription factor TBX2 2 AAGGNS(1)REPS(1)PLPELALR 73.036 0.011876 112930000.0 46534.0 48753.0 42237.0 47003.0 43055.0 47388.0 44651.0 46641.0 53560.0 47343.0 True False 46283.46611441342 50375.714133189176 48183.60246941473 52953.574980673824 48537.79904302151 44112.17909935319 42491.06054661569 50121.58825819909 40360.85566723022 44321.5292076185 1.0442660021409569 1.136596932321776 1.0871376356105595 1.1947596558011258 1.0951291598187516 0.9952765594507212 0.9587002367985046 1.1308632430846635 0.9106377056207828 1.0 15.43572003851299 2.8381183190517905 5.00093723431921 1.014229790063653 1.1181198790527433 0.429132678246563 0.06384766819985299 0.24392267701714815 9.637961961041533 0.01970562987810723 0.020944377981539 688.8399381182493 -2.8381183190517905 0.10389008898909036 AAGISLIVPGKS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAGISLIVPGKSPTR 15 1 J3KPC5;P47736-3;P47736;P47736-4;F2Z357 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 AAGISLIVPGKS(0.979)PT(0.021)R;AAGISLIVPGKS(0.996)PT(0.004)R 138.44 6.3918e-06 6608130000.0 3621500.0 3791800.0 3247800.0 3484900.0 3151700.0 3384300.0 3516700.0 3200300.0 4149800.0 3328800.0 True False 3602002.2463864796 3918007.7708084937 3705062.0096163317 3926087.982685153 3553050.313410545 3150351.306785278 3346583.785901395 3439122.6367941205 3127137.3944710963 3116353.1340709357 1.1558389217852 1.257241269602314 1.1889095523575524 1.2598341117896512 1.1401308390134675 1.0109096021059494 1.0738782294321394 1.1035728265819307 1.0034605386283912 1.0 21.571427293066005 2.9829017885540723 4.478189811008027 1.0533724208539128 1.215923525246975 0.7907733678856816 0.042689720399245706 0.0920093170926698 4.58788445993917 0.012725577267117122 0.014343028118060408 961.3948437660716 -2.9829017885540723 0.16255110439306208 AAGISLIVPGKS(ph)PTRK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAGISLIVPGKSPTRK 16 2 J3KPC5;P47736-3;P47736;P47736-4;F2Z357 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 AAGISLIVPGKS(0.814)PT(0.186)RK 141.6 8.2881e-07 343710000.0 655750.0 575540.0 550790.0 538580.0 507950.0 606790.0 612120.0 606490.0 896590.0 634270.0 True False 652219.5148606735 594696.5009787229 628336.4444474966 606764.1727781482 572634.4216444733 564844.0355300183 582509.4170745194 651749.3634938175 675637.4081904769 593790.3455741334 1.0984003356101135 1.001526052774929 1.05817895008037 1.0218491716827602 0.9643713912033977 0.95125163239876 0.9810018324081936 1.0976085555308983 1.1378383182320115 1.0 19.179594111201006 -0.811877848305023 5.407519066716029 0.999999988001801 1.0319105570931881 0.027879529640856826 0.05944020994839154 9.088900234125211e-09 2.016947176863015e-09 0.06099455379545227 0.01437654873860685 0.1542134139809222 0.811877848305023 0.03191056909138712 AAGLATMISTMRPDIDNMDEYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAGLATMISTMRPDIDNMDEYVR 23 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 229.98 4.106e-33 1611360000.0 516860.0 612540.0 595020.0 607360.0 628940.0 626180.0 642950.0 560850.0 617920.0 577560.0 False True 514077.28318854445 632928.0236117507 678793.6439934454 684251.7137259763 709031.7809805594 582893.6504691681 611848.0521924832 602703.4749385945 465641.8957037882 540699.6263260073 0.9507631560273887 1.1705723340562022 1.2553987666049842 1.2654932247232888 1.3113228610834264 1.078035977997367 1.1315858609888847 1.1146733705623144 0.8611840530902012 1.0 19.044467833819915 1.405813275804806 3.540298912837715 0.9325807618512489 1.173639384275538 0.44179668541114714 0.10305026750738955 0.21223099586594096 4.512619475805405 0.08109319591227865 0.02748305487016313 25.457354824885638 -1.405813275804806 0.241058622424289 AAGQPYEQHAK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAGQPYEQHAK 11 0 O14976-2;O14976;A0A087X1U9;H0Y8H5 O14976-2 GAK Cyclin-G-associated kinase 0 ;; 143.17 3.7311e-05 405735000.0 412449.0 411102.0 401451.0 394588.0 381997.0 435020.0 448227.0 416744.0 538886.0 468686.0 False True 410228.4204113923 424785.2815535933 457971.81132535543 444542.8003419812 430642.0536763931 404948.09132693155 426544.54761657974 447843.5534631527 406084.7660024461 438774.0582177275 0.9349422845956623 0.9681184965196991 1.0437531634974226 1.013147409278675 0.9814665329705997 0.9229080063935527 0.9721279998848992 1.0206700808207871 0.9254985758545907 1.0 18.743118705768183 3.0030837698015698 24.976273353685947 0.9718927869635923 0.9928981057671888 0.06146578461359542 0.038328062994779234 318.95271731006824 2583226.5496804407 0.011795196295229949 0.014035449404665858 1007.1259117104877 -3.0030837698015698 0.021005318803596573 AAGS(ph)PSPLPAPDPAPK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAGSPSPLPAPDPAPK 16 0 Q9BZE9;Q9BZE9-2;J3KRY8;Q9BZE9-3;J3KRF7 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 1 AAGS(0.865)PS(0.135)PLPAPDPAPK;AAGS(0.618)PS(0.382)PLPAPDPAPK;AAGS(0.911)PS(0.089)PLPAPDPAPK 179.14 2.8052e-09 2186000000.0 5157200.0 4327400.0 4089300.0 3929900.0 4032800.0 4939300.0 4786100.0 4226700.0 5966200.0 4693400.0 True False 5129434.208218786 4471434.893031464 4665037.895167212 4427424.937058274 4546353.17572169 4597857.816861546 4554578.058322483 4542117.816747708 4495909.952984115 4393863.193778099 1.1674087202993229 1.0176545549627514 1.0617166919928478 1.0076383223145637 1.0347052184418313 1.0464271676397008 1.0365771207378427 1.033741292441591 1.0232248376213713 1.0 22.067058520393854 4.742144456049064 24.996184764307586 1.0316106437857302 1.1674087717836055 0.8510681245398658 0.01733114400248225 114.58500829261136 799161.2135255493 0.0037615087635526102 0.028043334268270704 55226.110311697965 -4.742144456049064 0.13579812799787527 AAGSPS(ph)PLPAPDPAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAGSPSPLPAPDPAPK 16 0 Q9BZE9;Q9BZE9-2;J3KRY8;Q9BZE9-3;J3KRF7 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 1 AAGS(0.215)PS(0.785)PLPAPDPAPK 182.02 2.3206e-09 804010000.0 1041600.0 939540.0 874650.0 848590.0 788420.0 1068600.0 1069500.0 922530.0 1427100.0 1069400.0 True False 1035992.141332639 970812.0209360776 997793.1174059147 956021.4069921067 888820.6136685411 994730.1972138272 1017764.1991132447 991373.8731124199 1075410.3271602744 1001149.9764405964 1.034802143247226 0.9696968923553494 0.9966469968399576 0.9549232677316379 0.8877996649698564 0.993587594888037 1.0165951386541676 0.990235126046815 1.0741750511583659 1.0 19.933226681419864 2.4815355146528923 23.18788929406823 1.0148177843415216 0.9667130722647108 0.26136577598961974 0.040320848064601324 110.19383309161715 578857.132688287 0.014101098129129274 0.012103357788322222 303.0648120452003 -2.4815355146528923 -0.048104712076810774 AAGTDGSDFQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAGTDGSDFQHR 12 0 A0A3B3ITE9;Q8N5M9 A0A3B3ITE9 JAGN1 Protein jagunal homolog 1 0 ; 167.2 4.9863e-05 400940000.0 181969.0 289860.0 256254.0 224934.0 278000.0 262750.0 210123.0 179886.0 233860.0 243940.0 False True 180989.2991226565 299507.81487592997 292332.335800303 253410.6213369976 313401.65216490487 244586.7109469708 199958.54774219022 193310.00676259963 176228.3365634516 228371.54035245845 0.7925212521810978 1.3114936056116404 1.2800734073480884 1.1096418623174102 1.3723323478977054 1.0710034646588913 0.8755843544847274 0.8464715282134262 0.7716738096676523 1.0 17.80102334777055 2.3430396415421004 3.591534361983177 0.8576026379857333 1.1862503325023965 0.4417084723470267 0.1579444658829451 0.19420537730009999 4.857286662713797 0.056256674053839634 0.04536257514194057 220.31275510051248 -2.3430396415421004 0.3286476945166632 AAGVNVEPFWPGLFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAGVNVEPFWPGLFAK 16 0 P05386 P05386 RPLP1 60S acidic ribosomal protein P1 0 ; 176.25 7.523800000000001e-09 155656000.0 522130.0 632920.0 504040.0 554740.0 528670.0 590130.0 523340.0 511620.0 724220.0 596290.0 False True 519318.91009409685 653986.3595917809 575004.4508057822 624970.0271212265 595992.9908274112 549335.7021165964 498024.0448470546 549799.6823537191 545745.6850508117 558234.2616904475 0.9302884930808314 1.171526730751668 1.0300414902241062 1.1195479568536146 1.0676395766584132 0.9840594528417077 0.8921416670824467 0.9848906097035558 0.9776284303979879 1.0 19.09051114712816 2.6858364748166954 4.225503302082524 0.9601829338522617 1.0714378362065002 0.35733692148821716 0.0642220246445779 0.2106731461613317 7.985050814961203 0.019727705502773602 0.018908700523613164 485.10580856465697 -2.6858364748166954 0.11125490235423852 AAHACATVGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAHACATVGNR 11 0 G3V2H2;G3V3U8;Q9Y2U9-2;Q9Y2U9 G3V2H2 KLHDC2 Kelch domain-containing protein 2 0 73.499 0.043391000000000006 6067500.0 8304.6 17996.0 13437.0 14260.0 12954.0 9241.2 8858.7 5319.8 5403.9 5337.8 False True 8259.888956327804 18594.98598118827 15328.812803502278 16065.314537889262 14603.615115626537 8602.37759544489 8430.170837479656 5716.790489397043 4072.181253550136 4997.137034079503 1.6529242444217496 3.7211278887038883 3.0675190011726228 3.2149037395466524 2.9223963673664985 1.7214612160479785 1.6870001322732457 1.1440131520127712 0.814902858532526 1.0 12.286886065608854 2.4501535553703 1.3786259080624337 1.0360113861725035 3.020624863228757 0.7204867548967375 0.5226370903559625 0.2110417080348737 0.8100672912628895 0.26106078827022217 0.18845976691745062 281.93796152456565 -2.4501535553703 1.9846134770562536 AAHIFNEALVCHQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAHIFNEALVCHQIR 15 0 E9PDF6;O43795;O43795-2 E9PDF6 MYO1B Unconventional myosin-Ib 0 ; 190.86 1.1527e-07 403100000.0 158241.0 221590.0 204517.0 217190.0 182564.0 167150.0 194308.0 160104.0 256310.0 205970.0 False True 157389.04803822795 228965.4891960166 233311.21590636857 244686.2317310077 205812.44325839455 155595.31392877697 184908.5797113569 172051.7734716387 193145.8348780394 192824.81826021132 0.8162281674023731 1.1874274860564604 1.2099646612477137 1.2689561122822424 1.067354529958155 0.8069257647052764 0.9589459561259812 0.8922698593676878 1.0016648096480758 1.0 17.556931225572164 2.986750578908708 23.48093173144903 0.9261396146124163 1.1363395097331845 0.3404149181233249 0.12477333409537422 287.42784632243286 509388.5596255789 0.037041565351853246 0.04100225059384773 969.9527505002438 -2.986750578908708 0.2101998951207682 AAHSEGNTTAGLDMR ddPTM_BT-474_Trastuzumab_2h_R1 5 AAHSEGNTTAGLDMR 15 0 P78371;P78371-2 P78371 CCT2 T-complex protein 1 subunit beta 0 ;;;; 188.39 1.4006e-08 4118820000.0 1468614.0 1659225.0 1584149.0 1673034.0 1507331.0 1732734.0 1704929.0 1544528.0 1975370.0 1780469.0 False True 1460707.145402356 1714451.301102308 1807183.409530055 1884839.9328599588 1699280.668199203 1612954.1769971016 1622455.0708087352 1659788.5223142677 1488566.5321018794 1666837.9440837991 0.8763342294833912 1.0285650786793676 1.0841986264737924 1.1307877526726136 1.0194636342606398 0.9676730618726612 0.9733730123959593 0.9957707815600476 0.8930481438734531 1.0 20.66868241652098 2.812277679089707 4.615305311409395 0.9687709440353782 1.0379457794355254 0.17193983778351873 0.06674470903177164 0.3915287302243813 15.793864116480162 0.021603091019274604 0.02280479713104864 649.0492898701418 -2.812277679089707 0.06917483540014713 AAHTEDINACTLTTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAHTEDINACTLTTSPR 17 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 AAHTEDINACTLTT(0.027)S(0.973)PR;AAHTEDINACTLTT(0.044)S(0.956)PR 230.0 5.9736e-16 953930000.0 260350.0 360980.0 355870.0 377560.0 358950.0 362100.0 321130.0 283880.0 306100.0 328710.0 True False 258948.30452760402 372995.0010829824 405973.40272250876 425359.0572879016 404660.1548366641 337068.8792917147 305595.7150642691 305064.56711343135 230665.75652985772 307731.4463772101 0.841474953489775 1.2120795761177223 1.3192457498310912 1.3822411141125508 1.314978237032822 1.095334530350673 0.993059756037012 0.9913337447466785 0.7495683630821173 1.0 18.23131235136915 2.267115322075339 1.9471529270346466 0.9198218183882647 1.2275554631892318 0.4279812242910398 0.15284318335532743 0.32927739107587317 2.5299532480497735 0.0764658058957051 0.051049654853785514 184.97597369199448 -2.267115322075339 0.3077336448009671 AAHVPENS(ph)DTEQDVLTVKPVR ddPTM_BT-474_Trastuzumab_2h_R1 5 AAHVPENSDTEQDVLTVKPVR 21 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(0.995)DT(0.005)EQDVLTVKPVR 253.44 1.3946999999999999e-36 2814900000.0 2454190.0 2306050.0 2123510.0 2090860.0 2037210.0 2618760.0 2474250.0 2272680.0 3066350.0 2774840.0 True False 2440976.9137261407 2382805.480213338 2422481.7501201974 2355562.6616192926 2296636.6180103105 2437731.2850979585 2354561.07494712 2442278.922035203 2310689.1294849035 2597747.335539952 0.9396513973206614 0.9172583675148155 0.9325317042878133 0.9067712742469928 0.884087758108679 0.938401996124564 0.906385714551302 0.9401526039974036 0.8894972570550699 1.0 21.308829686218523 -1.6940828830060168 2.6546006316405864 1.0126134407125114 0.9181451496999695 0.6177748303034841 0.019527425079992916 4382845.044330968 3708179.1031080536 370727.2170914578 0.004502919725651972 0.020226331320696126 1.6940828830060168 -0.09446829101254184 AAIDWFDGK ddPTM_BT-474_Trastuzumab_2h_R1 5 AAIDWFDGK 9 0 Q92804-2;Q92804;A0A075B7D9;P35637-2;P35637;H3BPE7 Q92804-2;P35637-2 TAF15;FUS TATA-binding protein-associated factor 2N;RNA-binding protein FUS 0 ;;;; 168.27 0.00013809 4855289000.0 10296390.0 9923390.0 8897090.0 8386370.0 8249420.0 9841800.0 9886570.0 10007800.0 12404840.0 9765230.0 False True 10240955.38027647 10253684.037334075 10149722.937107394 9448083.58212611 9299934.738856863 9161459.531105215 9408318.838734949 10754632.854578696 9347833.398339884 9142004.660965983 1.120208943231316 1.12160126991782 1.110229464271016 1.0334805037309822 1.0172752130137497 1.002128074843617 1.0291308293580357 1.176397656030326 1.0225146174178557 1.0 23.124079123810947 3.820708025653141 5.5756857501052135 1.0518829484849221 1.1192011376862383 0.3289529084431704 0.04861404834686935 0.34565729705905335 17.954362828967927 0.014445895915029733 0.026467016197947127 6617.714479631051 -3.820708025653141 0.06731818920131616 AAIDWFDGKEFSGNPIK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAIDWFDGKEFSGNPIK 17 1 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 ; 203.99 8.3804e-12 2907100000.0 2297780.0 3033490.0 2799080.0 3215530.0 2880030.0 3401010.0 3810100.0 3333150.0 5427400.0 3763090.0 False True 2285409.0077873566 3134457.8808665704 3193166.1339604966 3622615.7683042823 3246784.7492247922 3165906.1838163934 3625790.9070045515 3581886.578392748 4089889.993434008 3522926.3744565635 0.6487246013308743 0.8897313050858415 0.9063959318346712 1.028297325362951 0.921615839821697 0.8986580607449558 1.0291986041189565 1.0167361442361336 1.1609354152525833 1.0 21.748342893627296 5.443276453926435 0.6952179177367668 1.0154018928261388 1.3339083655258738e-36 0.7176360260907723 0.06796515798274884 4.046090494506962 0.7289207298489527 0.026816453633610928 4.044211386124092 277508.60476679116 -5.443276453926435 -1.0154018928261388 AAIELPSLEVLS(ph)DQEEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAIELPSLEVLSDQEEDR 18 0 Q9BQI3-2;Q9BQI3 Q9BQI3-2 EIF2AK1 Eukaryotic translation initiation factor 2-alpha kinase 1 1 AAIELPSLEVLS(1)DQEEDR;AAIELPSLEVLS(1)DQEEDR 178.12 1.7222e-14 19951000.0 42321.0 47562.0 40646.0 48462.0 43350.0 41002.0 35546.0 40104.0 45494.0 52297.0 True False 42093.14843830512 49145.07241816383 46368.60349863463 54597.28423107917 48870.36554441953 38167.62824832615 33826.50418109338 43096.764123985675 34282.61328836766 48959.36068628572 0.8597569054878624 1.0037931813094556 0.9470835167915743 1.1151551708552583 0.9981822650333113 0.7795777500627679 0.6909098425088037 0.8802558595512411 0.7002259181454294 1.0 15.579297098920964 2.740902668666473 24.577441302196934 0.799439579806622 0.9909969524226621 0.4214718501540793 0.10176211419992666 144.21250308851748 1513366.5252989724 0.030333486264952494 0.030806275046942784 550.6842666985377 -2.740902668666473 0.1915573726160401 AAIELPSLEVLS(ph)DQEEDREQCGVK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAIELPSLEVLSDQEEDREQCGVK 24 1 Q9BQI3-2;Q9BQI3 Q9BQI3-2 EIF2AK1 Eukaryotic translation initiation factor 2-alpha kinase 1 1 AAIELPSLEVLS(1)DQEEDREQCGVK;AAIELPSLEVLS(1)DQEEDREQCGVK;AAIELPSLEVLS(1)DQEEDREQCGVK;AAIELPSLEVLS(1)DQEEDREQCGVK 285.75 7.473599999999996e-53 700710000.0 595670.0 524433.0 478007.0 466274.0 477137.0 582420.0 560540.0 550970.0 743700.0 636680.0 True False 592462.978905158 541888.4353785575 545306.2306886745 525304.24059185 537897.5687374328 542158.6762692088 533424.5387292547 592086.1791689704 560425.1000694388 596046.5373108285 0.9939877875612896 0.9091377962254172 0.9148719043800204 0.8813141385936992 0.9024422340649018 0.9095911851367438 0.8949377361302958 0.9933556225999972 0.9402371542965383 1.0 19.185065450302908 1.7385770539633947 10.658046068772913 0.9743866472733042 0.91293661796104 0.44425953640868676 0.03197221334989326 0.0800493812793161 46.89776088368915 0.014793193724989905 0.008049203956305052 54.77432747646429 -1.7385770539633947 -0.061450029312264176 AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANMGGTVAHK ddPTM_BT-474_Trastuzumab_2h_R1 6 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 AAIPPPVYEEQDRPRS(0.978)PT(0.021)GPSNSFLANMGGTVAHK;AAIPPPVY(0.005)EEQDRPRS(0.964)PT(0.031)GPSNSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.984)PT(0.016)GPSNSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.953)PT(0.047)GPSNSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.498)PT(0.498)GPS(0.004)NSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.993)PT(0.007)GPSNSFLANMGGTVAHK 255.93 3.8080999999999995e-60 2424277000.0 512488.0 723147.0 667401.0 867167.0 776805.0 762763.0 935600.0 697305.0 1083641.0 888821.0 True False 509728.82155076996 747216.5107434078 761365.2596465158 976950.253287364 875726.5122660398 710034.9891609668 890341.4536609171 749341.4399430446 816592.1955954644 832095.6828220569 0.6125843843126574 0.8979934954225685 0.9149972477496116 1.1740840307860174 1.052434870586047 0.8533093054309324 1.0699988859950809 0.9005472031793856 0.9813681436562531 1.0 19.6663899080867 4.797335987609234 1.778343377865484 0.993484329124876 0.44889468866074533 0.6386188250427289 0.08669529717166177 0.6760362434651516 1.9130949212899986 0.022871950550029746 0.6492747804067206 62709.8825828982 -4.797335987609234 -0.5445896404641307 AAIPPPVYEEQDRPRSPT(ph)GPSNSFLANMGGTVAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 AAIPPPVYEEQDRPRS(0.156)PT(0.832)GPS(0.012)NSFLANMGGTVAHK 119.39 8.427e-05 605960000.0 53062.0 71840.0 69946.0 80278.0 73490.0 78360.0 81332.0 61715.0 98364.0 82135.0 True False 52776.3200877424 74231.15097180296 79793.78881846913 90441.18656891122 82848.51589064338 72943.15763959894 77397.660441588 66320.48668242004 74123.51021007159 76893.07398068874 0.6863598677430541 0.9653814983446453 1.0377240066967395 1.1761941861190905 1.0774509536639192 0.9486310517110839 1.0065621834942635 0.8625027359301054 0.9639816224369868 1.0 16.230566035165516 4.732377839770591 3.7976111848357004 1.002954247677439 0.6561664934048049 0.6018978738509102 0.07813261396809161 0.19808065346469395 5.5858374063366165 0.02200072229097989 0.19062790759913403 53998.02054341567 -4.732377839770591 -0.346787754272634 AAKLS(ph)EGS(ph)QPAEEEEDQETPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 AAKLS(1)EGS(1)QPAEEEEDQETPSR;AAKLS(1)EGS(1)QPAEEEEDQETPSR;AAKLS(1)EGS(1)QPAEEEEDQETPSR;AAKLS(1)EGS(1)QPAEEEEDQETPSR;AAKLS(1)EGS(1)QPAEEEEDQETPSR 195.97 1.2418000000000002e-22 4898430000.0 4488860.0 3715210.0 3295430.0 3345080.0 3570980.0 4978360.0 4733430.0 4433190.0 6748150.0 4870130.0 True False 4464692.476519231 3838868.518958128 3759397.8996089553 3768566.7850212166 4025723.136143281 4634217.690998896 4504455.907441421 4764017.149082692 5085158.853077293 4559314.133871933 0.979246515029587 0.84198377348876 0.8245533843960735 0.826564407357651 0.8829668274522888 1.016428689694902 0.9879678774438987 1.0448977651462936 1.1153341717120935 1.0 22.120385382730905 2.720270215656885 2.7948119201293586 1.0373050784594653 0.8612241382680494 0.7101287947086122 0.05182193478206122 0.149222887156247 2.335067383295075 0.018079456077379007 0.017829126098215627 525.134094192286 -2.720270215656885 -0.17608094019141585 AAKLS(ph)EGSQPAEEEEDQETPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 AAKLS(0.998)EGS(0.002)QPAEEEEDQETPSR;AAKLS(0.999)EGS(0.001)QPAEEEEDQETPSR;AAKLS(0.996)EGS(0.004)QPAEEEEDQETPSR;AAKLS(0.999)EGS(0.001)QPAEEEEDQETPSR;AAKLS(0.999)EGS(0.001)QPAEEEEDQETPSR 357.21 1.5392999999999995e-96 5380290000.0 1619513.0 1665345.0 1642377.0 1748060.0 1825860.0 2322140.0 2265860.0 2079132.0 2946360.0 2380080.0 True False 1610793.7219528102 1720775.0016026895 1873609.405803203 1969364.2167673686 2058372.4482799044 2161615.927529585 2156251.6953742276 2234287.3874583715 2220269.057201275 2228181.2567109945 0.7229186212303452 0.7722778371014194 0.8408693862584712 0.8838438124528234 0.9237903972490353 0.9701257117297243 0.9677182629913413 1.0027404102466917 0.9964490323729773 1.0 21.087435166239864 4.190703913556254 0.5082887749789727 1.0074239694718496 0.6121206018671311 0.9939570691935535 0.007403490207926661 0.17023589330515507 0.05025506424747176 0.004721791006011467 0.03781760846519606 15513.290087157628 -4.190703913556254 -0.3953033676047185 AAKNS(ph)EEEEEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 AAKNSEEEEEEK 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK 235.35 2.908e-16 5196440000.0 5506360.0 3180530.0 2469100.0 2299980.0 2527610.0 4011950.0 3819190.0 4079610.0 6721690.0 3800260.0 True False 5476714.369574108 3286392.0183790163 2816727.818198068 2591157.2321777376 2849486.151181786 3734613.3396144537 3634441.188977386 4384051.214039826 5065219.565531458 3557724.1532337284 1.5393870164431238 0.9237343528704749 0.7917218134064314 0.7283187567598665 0.8009294786364473 1.0497197586889768 1.0215635143252821 1.2322628245517637 1.4237246473781613 1.0 21.762523225463454 1.8953416308054174 2.2426598166112717 1.2480035737471176 0.9424016032741084 0.17294118166207095 0.23431682164453999 0.46179589150732964 4.268890708513922 0.14088273341969426 0.06917913739189735 78.5853570671052 -1.8953416308054174 -0.3056019704730092 AAKNS(ph)EEEEEEKKK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAKNSEEEEEEKKK 14 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK 188.09 4.8272e-06 4189520000.0 3040920.0 1536711.0 999787.0 1039329.0 1100647.0 2314670.0 2355430.0 2151470.0 5467430.0 2051490.0 True False 3024548.0245979726 1587859.4966735833 1140548.3192956126 1170907.9448351962 1240807.8714041226 2154662.311047094 2241488.8522835993 2312023.6163432947 4120055.1363085276 1920562.1518310457 1.5748243407350275 0.8267680872289048 0.5938617077339698 0.6096693844137581 0.6460649400078764 1.121891477967979 1.1671003982592207 1.203826501599562 2.14523395266355 1.0 20.87309722139287 1.9443258675735218 1.4736310563215655 1.519115842908325 0.8403815894942922 0.3060385339632635 0.38354573299365485 0.4662197862603246 1.8838486328557642 0.2663761996950972 0.12152146549547486 87.96823281770746 -1.9443258675735218 -0.6787342534140327 AAKPGPAEAPS(ph)PT(ph)ASPSGDASPPATAPYDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 AAKPGPAEAPS(0.961)PT(0.355)AS(0.274)PS(0.198)GDAS(0.207)PPAT(0.005)APYDPR 59.678 0.071626 2983100000.0 108290.0 106290.0 100950.0 94520.0 107850.0 124910.0 116150.0 107300.0 136850.0 122370.0 True False 107706.9786721501 109827.7983963381 115162.88252687009 106486.22230864607 121584.05822296778 116275.26570651235 110531.3807639114 115307.27085835977 103125.15119605027 114560.24183377212 0.9401776475684631 0.958690350494364 1.0052604698056802 0.9295216263872634 1.0613111169875784 1.0149704980129908 0.9648319433917866 1.0065208401503865 0.900182729586812 1.0 16.805746917647564 4.425127097060888 5.263286900846023 0.9871770513267255 0.9441338558607696 0.1051531847540983 0.04307031561185691 0.3574312930387302 21.05891418922859 0.010158200995099982 0.03033936578256397 26615.038397210297 -4.425127097060888 -0.04304319546595592 AAKPGPAEAPS(ph)PTAS(ph)PSGDAS(ph)PPATAPYDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 3 AAKPGPAEAPS(0.819)PT(0.402)AS(0.714)PS(0.357)GDAS(0.695)PPAT(0.012)APY(0.002)DPR 56.006 0.084468 417450000.0 111860.0 121280.0 104290.0 87564.0 111460.0 133040.0 130020.0 143830.0 173320.0 127650.0 True False 111257.75818881426 125316.73148469182 118973.12549506966 98649.5934218607 125653.77032482123 123843.25794247382 123730.4358753662 154563.32495394145 130607.6083690131 119503.26771333665 0.9310018070442924 1.0486469021525038 0.9955637847532446 0.8254970371061354 1.051467233734883 1.0363169167854716 1.0353728248851708 1.2933815778553148 1.0929208118585798 1.0 16.866690542428366 1.955895713754913 8.892757581678032 1.162430995640927 0.9856406768993771 0.3122321712923376 0.09379132831657735 0.39126094164499153 75.35219851720535 0.03868227544595417 0.024656248223284067 90.34325082744151 -1.955895713754913 -0.17679031874154982 AAKPGPAEAPS(ph)PTASPSGDAS(ph)PPATAPYDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 AAKPGPAEAPS(0.929)PT(0.153)AS(0.087)PS(0.051)GDAS(0.779)PPATAPYDPR;AAKPGPAEAPS(0.973)PT(0.027)AS(0.001)PS(0.09)GDAS(0.908)PPAT(0.001)APYDPR;AAKPGPAEAPS(0.769)PT(0.227)AS(0.004)PS(0.014)GDAS(0.904)PPAT(0.08)APY(0.001)DPR;AAKPGPAEAPS(0.889)PT(0.107)AS(0.004)PS(0.004)GDAS(0.984)PPAT(0.011)APYDPR 126.73 3.3789e-06 4829970000.0 1097960.0 1117610.0 938540.0 1007730.0 1086350.0 1161960.0 1098050.0 1047510.0 1456730.0 1194490.0 True False 1092048.7053548228 1154808.9732404877 1070678.2740640787 1135308.5146751164 1224690.2331990807 1081636.440159628 1044933.1265416519 1125680.5153480023 1097738.410681932 1118256.6255456596 0.9765635905103192 1.03268690465124 0.9574531011981576 1.0152486367976012 1.0951781596657084 0.9672524315533005 0.9344305257585851 1.0066388069006256 0.981651604475211 1.0 20.092819875499057 1.2411325693567081 24.927780940166343 0.9908258103395075 0.9979931140313283 0.004698760728590656 0.042751999578320196 756.5344762143492 7333171.869589647 0.03259280166662909 0.010653435299007344 17.423386449725427 -1.2411325693567081 0.007167303691820837 AAKPGPAEAPS(ph)PTASPSGDASPPATAPYDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 AAKPGPAEAPS(0.961)PT(0.038)ASPSGDASPPATAPYDPR 174.6 1.6333e-13 7195100000.0 366810.0 360400.0 320370.0 322550.0 338930.0 383350.0 401100.0 369860.0 441750.0 448260.0 True False 364835.1357164221 372395.6961335993 365475.31129404093 363384.79692820366 382090.72650450096 356849.9168088341 381697.26064920245 397460.8313110247 332886.6316467319 419651.6630253061 0.8693761227735719 0.8873923993270173 0.8709016155429886 0.8659200688221522 0.9104949656340571 0.8503479153073561 0.909557364547332 0.9471208297989202 0.7932451148815249 1.0 18.67883277247188 -2.4203873062052703 2.346050585491562 2.12227855378091 0.8841740082195407 0.4573856100541597 0.03930696939110602 4408087.258797812 1160779.4224846065 25565501.33464804 0.009304604148166017 0.0037985049246852367 2.4203873062052703 -1.2381045455613693 AAKPGPAEAPSPTASPSGDAS(ph)PPATAPYDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 AAKPGPAEAPSPTASPS(0.002)GDAS(0.988)PPAT(0.01)APYDPR;AAKPGPAEAPSPTASPS(0.01)GDAS(0.99)PPATAPYDPR;AAKPGPAEAPSPTASPSGDAS(0.998)PPAT(0.002)APYDPR 124.82 4.1375e-06 4266800000.0 1174770.0 1234440.0 1158470.0 1008730.0 1098550.0 1385030.0 1257750.0 1255090.0 1472700.0 1269170.0 True False 1168445.1688492158 1275527.5891652605 1321572.506398251 1136435.1145725842 1238443.8308840168 1289286.1361099237 1196907.8274284073 1348751.1890178835 1109772.8181689673 1188170.4840088955 0.9833985817480281 1.0735223659668953 1.1122751525852217 0.9564579577319949 1.0423115601268758 1.0851019727066973 1.007353610897682 1.1351495489663972 0.9340181675146365 1.0 20.180310424644567 1.2151956516646054 24.997012124717937 0.9670090606120431 1.05219177629587 0.2635701555763401 0.05496585777049386 342.27860098131055 366177.37054610916 0.05067064256674193 0.012697375478710261 16.4132903295694 -1.2151956516646054 0.08518271568382685 AALAPAKES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 10 AALAPAKESPR 11 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR 143.56 2.2484e-05 30898010000.0 23061160.0 20171270.0 18272850.0 17565600.0 16127470.0 23812060.0 24201620.0 21299800.0 33623400.0 25293280.0 True False 22937001.276895743 20842658.528159797 20845508.449540567 19789403.15895847 18181207.709496178 22165988.339759912 23030895.18143344 22889299.23419288 25337363.600477006 23679041.215733524 0.9686625851073424 0.8802154757140633 0.8803358319968538 0.8357349851568066 0.7678185760923328 0.9361015987856693 0.972627859870043 0.9666480591699 1.0700333417064882 1.0 24.49710733042712 2.3904319337153668 3.1828327084676493 0.9963033260512205 0.8653896933373084 0.5808431701362848 0.053891010321843916 0.1934417384088764 3.953134345349985 0.02101808970283677 0.01716396820008832 245.7151495582225 -2.3904319337153668 -0.1309136327139121 AALAPAKES(ph)PRK ddPTM_BT-474_Trastuzumab_2h_R1 1 AALAPAKESPRK 12 2 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 AALAPAKES(1)PRK 137.21 5.0242e-05 517590000.0 654530.0 490880.0 433970.0 448830.0 397300.0 763160.0 687690.0 606480.0 1186700.0 786780.0 True False 651006.0832051202 507218.6440567735 495069.20386513986 505651.83198042336 447893.8000184062 710404.5454854046 654423.807469085 651738.6172430383 894253.6859653122 736567.0268037533 0.8838382109366002 0.6886252378928631 0.672130554110513 0.6864980559537677 0.6080828814208383 0.9644805151923813 0.8884782832444736 0.8848327355504657 1.2140832448688637 1.0 19.490457289361867 2.0613276428500793 0.9931104228610558 1.0612532595102058 0.7098570867265931 0.6035362870104642 0.11173991914893901 0.38016216466195196 0.693954319040031 0.08810973370525974 0.04348739333504859 115.16689097280187 -2.0613276428500793 -0.3513961727836127 AALCAVHVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 AALCAVHVIR 10 0 O43747;O43747-2;H3BNR4;H3BR36;H3BUN9 O43747 AP1G1 AP-1 complex subunit gamma-1 0 ; 163.2 6.5347e-06 1982170000.0 937860.0 1142920.0 1026110.0 1135300.0 1019180.0 1052360.0 1132840.0 1036400.0 1290660.0 1103400.0 False True 932810.6659660417 1180961.4012902703 1170577.3688919928 1279028.8635950685 1148966.531846863 979612.8301889793 1078040.201330946 1113741.4307325643 972594.1369579419 1032980.0673317333 0.903028718042511 1.1432567177610542 1.133204217498295 1.2381931694954174 1.1122833520057473 0.9483366244611035 1.0436214941839164 1.0781828865385987 0.9415420178147552 1.0 19.97838098515434 2.828640538629013 9.19535693275268 1.0165087609079235 1.1172234158084493 0.24797329383952627 0.08748626950851034 0.6015419649441591 57.50738610251288 0.027127326158768252 0.028787591686316227 673.9699583148756 -2.828640538629013 0.10071465490052578 AALDGGVASAAS(ph)PESKPSPGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AALDGGVASAASPESKPSPGTK 22 1 A0A0J9YWL0;Q9Y4K1;A0A494C1M5 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 AALDGGVASAAS(0.999)PES(0.001)KPSPGTK 132.84 6.0415e-06 410040000.0 292710.0 221000.0 194060.0 184300.0 180580.0 324630.0 304100.0 278040.0 452780.0 342710.0 True False 291134.0818831383 228355.85140267888 221381.96120024216 207632.36110329546 203575.79261848406 302189.0921968226 289389.52122518694 298788.75665851205 341198.4359411598 320837.9543912073 0.9074178347619989 0.7117482463569063 0.6900117588030266 0.647156479654284 0.6345128119419999 0.9418745134759037 0.9019803214189729 0.9312762176952106 1.0634603271567002 1.0 18.291485293826454 2.7231207975921166 22.216469575903314 0.9553853958965354 0.7123032367205782 0.7005520534819603 0.08133199294957544 110.36297122784367 158801.21250761425 0.027039470526181823 0.025615680390255538 528.592257540162 -2.7231207975921166 -0.2430821591759572 AALDGPLDAALDHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 AALDGPLDAALDHLR 15 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ;;; 241.42 7.010599999999999e-18 475236000.0 296456.0 386599.0 351465.0 384132.0 352431.0 351400.0 341757.0 331356.0 413462.0 365131.0 False True 294859.9138353579 399466.7140109692 400948.21701145556 432763.07181405823 397310.9988278047 327108.54510662373 325224.90827147715 356083.4673116744 311569.8302069521 341828.026975624 0.8625972435442942 1.168618961836782 1.1729530213157375 1.2660257136987743 1.1623125299088986 0.9569389262804658 0.9514284453178241 1.041703544505047 0.9114812292122858 1.0 18.382911164958944 2.7382557732786004 24.99897732865981 0.9786698831542529 1.1391733428794355 0.35690626842200024 0.10260909414639346 31.0990311707405 2550204.622314737 0.03278261484434307 0.032696195074806034 547.3382172169829 -2.7382557732786004 0.16050345972518265 AALEAIDELDLFGAHGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AALEAIDELDLFGAHGGR 18 0 P46019 P46019 PHKA2 Phosphorylase b kinase regulatory subunit alpha, liver isoform 0 ; 164.62 3.0189e-11 57345000.0 42831.0 50193.0 43855.0 49546.0 45886.0 51198.0 43182.0 43622.0 54945.0 51661.0 False True 42600.40265497144 51863.64366269076 50029.40280550664 55818.51851993419 51729.31011236991 47658.802767128465 41093.12168874063 46877.29514802773 41404.540975279386 48363.95075079269 0.8808296674206918 1.0723616011010166 1.034435814875745 1.1541347977867444 1.0695840457475874 0.985419967295524 0.8496642861225954 0.9692610802118851 0.8561033648517798 1.0 15.561644479714868 2.4808255696152597 5.671473733388458 0.91878291999328 1.0481303001741409 0.3659103670565368 0.07639640380494546 0.16727663755372033 19.48536292570755 0.025606513152735242 0.022486728335756677 302.5697940270503 -2.4808255696152597 0.1293473801808609 AALEEVYPDLTPEETRR ddPTM_BT-474_Trastuzumab_2h_R1 4 AALEEVYPDLTPEETRR 17 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ;;; 274.48 1.7383999999999996e-35 1482710000.0 607711.0 758080.0 680280.0 803480.0 768540.0 808180.0 752520.0 693540.0 849540.0 843520.0 False True 604439.151499039 783312.2345309631 776057.5109002409 905200.4856173404 866409.0135065321 752312.4188510854 716117.7326944349 745295.4765247613 640182.2502527771 789685.8314261944 0.7654172424588209 0.9919289461180779 0.9827420982071561 1.1462792538426623 1.0971565894018556 0.952673061757216 0.90683877587256 0.94378732258465 0.8106796713024347 1.0 19.590919280141936 2.484801686256035 21.270482665756827 0.9160196863495047 1.0060676254389678 0.11948316387102698 0.10277043932410501 103.86098419211044 287645.67671138176 0.03584618858247874 0.031335433245537406 305.3526449991018 -2.484801686256035 0.09004793908946307 AALHPPALAVLSHTPDGATQTIAWVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AALHPPALAVLSHTPDGATQTIAWVGK 27 0 Q8NDH3-3;Q8NDH3-2;Q8NDH3;Q8NDH3-5;Q8NDH3-4;H0YEP3 Q8NDH3-3 NPEPL1 Probable aminopeptidase NPEPL1 0 65.21300000000001 0.0149 371900000.0 203820.0 172900.0 118150.0 121540.0 125170.0 181370.0 155590.0 101920.0 201360.0 151670.0 False True 202722.6557665309 178654.8719797427 134784.4930217901 136926.95153822296 141109.65755928488 168832.3187990562 148063.51728848022 109525.78793927348 151737.52608576338 141990.29074877998 1.427721956885089 1.258218931996079 0.9492514756537902 0.9643402433796303 0.9937979337541242 1.1890412922512228 1.042772125528255 0.7713611075918904 1.0686471961257475 1.0 17.115432756508397 4.400061579608315 3.2801012327578305 0.9856612797159133 1.4058294095332153 0.6642351785217172 0.10100103673150437 0.14616215148322986 3.013249655558657 0.02793663407647387 0.1029187419825232 25122.42622886247 -4.400061579608315 0.420168129817302 AALLELWELRR ddPTM_BT-474_Trastuzumab_2h_R1 2 AALLELWELRR 11 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 196.88 9.4558e-08 846340000.0 326420.0 341420.0 296110.0 285530.0 296000.0 311660.0 318870.0 269940.0 401010.0 354110.0 False True 324662.590988671 352783.9583072518 337799.7141657413 321678.06872394943 333693.8454705466 290115.67776872637 303445.03989830794 290084.2935275459 302186.4587587003 331510.3966311765 0.9793436172376697 1.0641716274730995 1.0189717052571414 0.9703408158321921 1.0065863661036227 0.8751329693333749 0.9153409455085874 0.8750382988750743 0.9115444397205414 1.0 18.338694590424872 2.7505042863923856 23.73013499071342 0.905098730689308 1.0095403791257251 0.5582440392059824 0.040601697439586276 242.82323375057658 482449.4262094284 0.01193251519735904 0.012555387846166135 562.9946740022027 -2.7505042863923856 0.10444164843641712 AALLKAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 AALLKASPK 9 1 P50914 P50914 RPL14 60S ribosomal protein L14 1 AALLKAS(1)PK;AALLKAS(1)PK 85.973 0.0087527 4471000000.0 5535300.0 3470500.0 3375300.0 2939600.0 2339100.0 5115200.0 5283900.0 4064900.0 9646400.0 5626000.0 True False 5505498.5598296495 3586013.494538447 3850512.9013664657 3311753.0585960187 2636970.520068094 4761598.263885608 5028297.570541809 4368243.47914396 7269173.975137587 5266943.863339077 1.0452928116722582 0.6808528033684086 0.7310715666001729 0.6287807777196378 0.5006642539752337 0.9040533537919473 0.9546897975392559 0.8293696672086099 1.3801502662170315 1.0 22.32853465222331 1.7321993622664464 1.2527110589113977 1.1407775824990611 0.7274268548041046 0.4203564449594792 0.18134261231886342 0.4201962234798214 1.2425661344514118 0.14919492371462403 0.05782819608923869 53.97583409548616 -1.7321993622664464 -0.4133507276949565 AALLNQHYQVNFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AALLNQHYQVNFK 13 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 199.43 1.1789000000000002e-07 642550000.0 1149200.0 1195000.0 1062800.0 1111900.0 974630.0 1242000.0 1212600.0 1105100.0 1607300.0 1219400.0 False True 1143012.8348881225 1234774.8526072458 1212433.001976796 1252666.4259943254 1098743.3534153998 1156143.4633535198 1153941.9054181585 1187568.1735840968 1211202.4517165623 1141576.8480191368 1.0012578976802808 1.0816397115532135 1.0620686676333781 1.097312395716461 0.9624786586395286 1.0127600830024357 1.0108315593649937 1.040287542310239 1.0609907285858502 1.0 20.122596550677716 3.2556276605354557 24.998622015366035 1.0178078009032732 1.0621817272872653 0.3099583574652256 0.03338741834917036 316.2642039941888 463238.828413237 0.009316167312023187 0.01258268307478998 1801.4725981321203 -3.2556276605354557 0.04437392638399218 AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR 39 0 O75390;B4DJV2;A0A0C4DGI3;F8VPA1;F8VX68;F8VPF9;F8VRI6;F8VR34;F8W1S4;H0YH82;F8VRP1 O75390 CS Citrate synthase, mitochondrial;Citrate synthase 0 ; 284.08 2.473199999999999e-77 878630000.0 64171.0 61496.0 97108.0 85232.0 82152.0 112481.0 83299.0 77485.0 89449.0 106577.0 False True 63825.51046606834 63542.85718488299 110779.96232213294 96022.36246096615 92613.57024694698 104705.45322179324 79269.50913691823 83267.32416085758 67405.49250519185 99775.16461483968 0.6396933616942938 0.6368604595159163 1.1102959614226133 0.9623874120542881 0.928222675497069 1.049413986195722 0.7944813666098265 0.834549604426041 0.6755738541288916 1.0 16.606393133529714 4.271392497336864 24.887946325030075 0.9094298112001616 0.6382762313758757 0.46452374131303253 0.12033962543503732 168.70434368643083 127882.22971646795 0.030457718236531258 0.0833990449525921 18680.672098160005 -4.271392497336864 -0.2711535798242859 AALQELLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AALQELLSK 9 0 P62851 P62851 RPS25 40S ribosomal protein S25 0 136.33 0.00045578 88735000.0 155350.0 131350.0 128880.0 118740.0 115260.0 144110.0 160760.0 127760.0 185430.0 150860.0 False True 154513.61286100763 135721.90534724836 147025.18375495833 133772.47182531355 129937.67780045675 134148.01489845064 152983.4246371625 137294.09995213486 139733.26113469925 141231.98564225584 1.0940412128198387 0.9609856062707732 1.0410190233207994 0.9471825466234156 0.9200300994817997 0.9498415977684469 1.083206640064336 0.9721176072671261 0.9893882076305796 1.0 17.107707335720427 4.7467576832497915 24.259151792744408 0.9854262123661044 1.094041295427339 0.34172675965910815 0.04545285847136815 819.1302392275157 2424123.3216265473 0.011029138190883551 0.123403299519989 55815.86804481637 -4.7467576832497915 0.10861508306123469 AALQTAPESADDS(ph)PSQLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 AALQTAPESADDSPSQLSK 19 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 AALQTAPES(0.007)ADDS(0.986)PS(0.007)QLSK;AALQTAPESADDS(0.996)PS(0.004)QLSK;AALQTAPESADDS(0.994)PS(0.006)QLSK;AALQTAPESADDS(0.993)PS(0.007)QLSK 489.43 2.217299999999998e-240 1388420000.0 1549580.0 1421910.0 1311270.0 1225450.0 1301170.0 1674000.0 1608490.0 1550030.0 2044430.0 1715030.0 True False 1541237.2334545231 1469237.4147872524 1495885.4182368421 1380591.8443517818 1466866.2868611848 1558280.3201721376 1530681.193671494 1665701.109492857 1540607.620458468 1605575.317088944 0.9599283303936986 0.9150847046223377 0.9316818727314645 0.8598736101990669 0.913607895717249 0.9705432710546669 0.9533537152568838 1.0374481295047102 0.959536188717532 1.0 20.614658912396003 2.404342804576962 1.8092440681659203 0.998689682076742 0.9143711131169613 0.5359841184255527 0.03178424497180557 0.251749849365281 1.6790797603888858 0.014487858459175778 0.01079033015972474 253.713049055417 -2.404342804576962 -0.08431856895978074 AALS(ph)EEELEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AALSEEELEKK 11 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 AALS(1)EEELEKK;AALS(1)EEELEKK 105.19 0.0015306 655750000.0 1110400.0 837580.0 816160.0 778580.0 761050.0 1049330.0 1081010.0 948150.0 1651000.0 1106960.0 True False 1104421.729777038 865458.3439721976 931068.2338101085 877148.1481703937 857965.2064032417 976792.2869571245 1028717.4164407734 1018905.7676081442 1244133.172266561 1036312.865083863 1.0657222996914772 0.8351322975249958 0.8984431875549111 0.846412485769354 0.8279017228390881 0.9425650494825017 0.9926706992656363 0.9832028549850048 1.2005381909119504 1.0 19.983028190846206 1.8428971226632525 1.439948778706528 1.084448482624727 0.8922219931227371 0.43960625958145205 0.08277753519434981 0.3517545263854351 1.3708507846395006 0.059775085165218615 0.025118891157591933 69.64615141032861 -1.8428971226632525 -0.19222648950198984 AALS(ph)SSELLELGDSLMR ddPTM_BT-474_Trastuzumab_2h_R1 9 AALSSSELLELGDSLMR 17 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 AALS(0.731)S(0.243)S(0.026)ELLELGDSLMR;AALS(0.893)S(0.105)S(0.002)ELLELGDSLMR;AALS(0.568)S(0.423)S(0.009)ELLELGDSLMR;AALS(0.499)S(0.499)S(0.001)ELLELGDSLMR;AALS(0.987)S(0.012)SELLELGDSLMR;AALS(0.929)S(0.066)S(0.005)ELLELGDSLMR;AALS(0.498)S(0.498)S(0.003)ELLELGDSLMR;AALS(0.981)S(0.018)S(0.001)ELLELGDSLMR;AALS(0.57)S(0.196)S(0.235)ELLELGDSLMR 440.8 2.2909999999999982e-182 627703000.0 362999.0 415356.0 367668.0 391392.0 365520.5 394148.9 363072.0 329813.2 433721.0 416763.0 True False 361044.65371698077 429180.87337199546 419432.4585724553 440942.18706967443 412067.36906525935 366902.31426971033 345508.8202902705 354425.53574149497 326836.27111364406 390164.82853124425 0.9253644288648853 1.0999988773658178 1.0750135017330689 1.1301433517971853 1.056136634910087 0.9403777261289684 0.8855457873815048 0.9083995015022547 0.8376876827775652 1.0 18.57372420627779 2.665562910992082 3.338639990239556 0.9017322132828787 1.0658193242330953 0.5664306798386788 0.06270215029195575 0.166416443946952 3.6365449106883845 0.020570395219973985 0.01961315055831098 462.98072534171473 -2.665562910992082 0.16408711095021666 AALSEEELEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AALSEEELEKK 11 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 155.97 5.0159e-05 370810000.0 316780.0 279400.0 225110.0 217100.0 220360.0 288450.0 249990.0 254380.0 465820.0 269520.0 False True 315074.49167756666 288699.6600991332 256803.53130880411 244584.83774023532 248421.53982395155 268510.1304382631 237897.02864546046 273363.12731546693 351024.9026682072 252319.00285231884 1.2487148732986169 1.1441851657447608 1.017773248965755 0.9693476709060622 0.9845534304419852 1.064169275412922 0.942842298662303 1.0834028520454526 1.3911948711752815 1.0 17.944889338255642 -0.6862401684535593 7.879459425722251 1.000000002643581 1.0789264002675634 0.03282341732836558 0.13191231455379748 0.0 0.0 0.12767899198854218 0.03009422701672036 0.20594906828537002 0.6862401684535593 0.07892639762398246 AALSEMVEYITHNR ddPTM_BT-474_Trastuzumab_2h_R1 2 AALSEMVEYITHNR 14 0 H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5;Q96B13;Q13362-2;G3V2U3 H0YJ75 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform 0 ; 252.42 3.3381e-24 243610000.0 304010.0 400000.0 379590.0 372390.0 385610.0 402900.0 377800.0 339980.0 406480.0 394850.0 False True 302373.24393868627 413313.758194894 433032.97254457354 419534.5358179932 434715.14781046426 375048.4713245844 359524.3706638468 365351.0339834591 306308.4505529451 369650.33495190775 0.8179980250201198 1.1181208810446959 1.1714664687126877 1.1349496974555036 1.1760171889659496 1.0146033585317296 0.9726066411129362 0.9883692761457717 0.8286437792428795 1.0 18.49580169504661 2.4179160145188625 3.1731705595366044 0.9510380884828098 1.0937409276224492 0.26576498363653156 0.10535400356681847 0.33572339560544573 6.923074707829074 0.03938880873957116 0.03266925834176754 261.76767432106266 -2.4179160145188625 0.14270283913963944 AALSRDEILRYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 AALSRDEILRYSR 13 2 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase 1 AALSRDEILRY(0.453)S(0.547)R;AALSRDEILRY(0.445)S(0.555)R 66.00399999999999 0.044928 8061100000.0 1090780.0 2982200.0 2899700.0 3683000.0 3180200.0 1958810.0 2206500.0 1685440.0 859480.0 2050590.0 True False 1084907.3616770508 3081460.7242220277 3307952.5553557742 4149267.422373503 3585179.6194778057 1823402.0752427594 2099763.1653514463 1811216.0912909047 647672.6704419531 1919719.5906015758 0.56513845406822 1.6051618889071195 1.7231436151147328 2.1613924464214387 1.8675538016228352 0.9498272998669386 1.093786392362361 0.9434795061519012 0.3373787888672815 1.0 20.87246416423278 2.672475479568017 6.611960419215332 0.8827498957690578 1.6245467155649598 0.4110473608910834 0.4292466017821377 0.25515422051011655 21.1277043127271 0.14502914039269213 0.13691173173950247 470.4088455134654 -2.672475479568017 0.741796819795902 AALSS(ph)SELLELGDSLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 AALSSSELLELGDSLMR 17 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 AALS(0.343)S(0.642)S(0.014)ELLELGDSLMR 72.315 0.030055 20341000.0 35328.0 41293.0 34990.0 39328.0 39591.0 34761.0 35574.0 30543.0 41674.0 31213.0 True False 35137.797973309775 42667.41254285441 39916.28786146794 44306.92076760932 44632.67917575811 32358.053888592378 33853.149714122985 32822.2737542114 31404.001102990154 29220.959617206274 1.2024861070140718 1.4601646592650028 1.3660156402927952 1.5162719276857675 1.5274200354966063 1.1073576745076803 1.1585228602208233 1.123244211832268 1.0747080696315816 1.0 14.834715936618032 2.725955836976432 24.643851970683276 1.1076329327012777 1.4199737383709627 0.7449616772780658 0.09388726409793631 325.3232787653516 636044.874445472 0.03009023880659279 0.02854839314434709 532.0541523973955 -2.725955836976432 0.31234080566968503 AALTGLLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AALTGLLHR 9 0 P55084-2;P55084;B5MD38;C9JEY0;C9JE81 P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase 0 ; 164.96 6.1867e-05 893090000.0 669240.0 812280.0 867310.0 780170.0 775360.0 1133150.0 814630.0 698200.0 1205100.0 881800.0 False True 665636.8861995537 839316.2487663705 989419.7092063369 878939.4420073685 874097.500081225 1054818.0076481814 775223.2347111943 750303.2293877611 908119.2525126794 825522.7690530387 0.8063216559891003 1.0167087816719511 1.1985371528168813 1.06470648049551 1.0588411765842711 1.277757618797321 0.9390694766668359 0.9088825378474269 1.1000535497699084 1.0 19.654948481636996 -0.4497856117523287 6.073766313210967 0.9999999982243828 1.0391665850563896 0.00875522634064374 0.1299175644516424 0.0 0.0 0.1290564928292211 0.030418906851926584 0.3549885851026485 0.4497856117523287 0.0391665868320068 AAMIWIVGEYAER ddPTM_BT-474_Trastuzumab_2h_R1 2 AAMIWIVGEYAER 13 0 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7EJ01;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7;H7C034 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 203.94 1.9036e-07 407850000.0 311700.0 370060.0 329690.0 324040.0 326960.0 347110.0 359140.0 292200.0 358900.0 398370.0 False True 310021.84183312574 382377.2233940061 376107.48628314846 365063.4307754299 368596.4179562493 323115.1027090503 341767.02615196875 314005.4477615354 270453.90401360975 372945.6855382843 0.8312787997149275 1.0252893067850053 1.0084779121128606 0.9788648721020121 0.988338067041163 0.8663864880021015 0.9163989272558163 0.8419602637534777 0.7251830883182228 1.0 18.508606011324122 2.731812395645554 22.739819516611465 0.8627380527179158 0.9727432774691923 0.2584734537034762 0.08088117707456202 189.46477891271698 638445.4650096074 0.02509729361404437 0.02421335983255563 539.2776177491393 -2.731812395645554 0.1100052247512765 AAMYDIISS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAMYDIISSPSK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 AAMYDIIS(0.022)S(0.973)PS(0.006)K 146.36 0.00030637 0.0 338090.0 262400.0 242920.0 228470.0 191760.0 308390.0 304480.0 280900.0 422820.0 315020.0 True False 336269.76100533 271133.8253758505 277121.0245015088 257394.2785744434 216179.4993494322 287071.72517197474 289751.139173446 301862.18438129843 318621.67649772734 294915.1538978093 1.140225439625427 0.9193621344727534 0.939663563702575 0.8727740001574582 0.7330226897202452 0.9734044567660557 0.9824898291725197 1.0235560309182903 1.080384213176555 1.0 18.169940430073222 2.1205777394581835 2.2945545567540258 1.0336697426345802 0.9168014699385029 0.19544926050405498 0.09579912056684667 0.4904203949633388 5.080421132324064 0.04917568232706321 0.029996929504147604 132.001157489982 -2.1205777394581835 -0.11686827269607736 AAMYDIISS(ph)PSKDSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAMYDIISSPSKDSTK 16 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 AAMYDIIS(0.002)S(0.998)PSKDSTK;AAMYDIISS(1)PSKDSTK 221.24 6.5101e-15 1567110000.0 2200660.0 1494040.0 1337090.0 1135220.0 1138160.0 2018420.0 2073570.0 1740520.0 3286800.0 2125650.0 True False 2188811.891076314 1543768.21823375 1525340.6498053763 1278938.7356032718 1283097.9295971515 1878891.3762496058 1973263.4972933615 1870406.4405814786 2476812.1808635606 1989989.1971394764 1.099911443852377 0.7757671350441752 0.766507000137482 0.6426862705796046 0.6447763291587458 0.9441716462332715 0.9915950800787474 0.9399078363189646 1.2446359932123607 1.0 20.92432916829631 2.527892009995732 4.904616560063023 1.0215541165146091 0.7762521267519525 0.42564471226407474 0.1407719930989183 0.21718288403424807 11.503542368614653 0.04848565837739361 0.04440969768060347 337.20345051350705 -2.527892009995732 -0.2453019897626566 AANQVEETLHTHLPQT(ph)PETNFR ddPTM_BT-474_Trastuzumab_2h_R1 1 AANQVEETLHTHLPQTPETNFR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 AANQVEETLHTHLPQT(0.998)PET(0.002)NFR 115.34 0.00037117 163740000.0 108180.0 122610.0 111070.0 116320.0 110420.0 128890.0 111570.0 40910.0 125490.0 93267.0 True False 107597.57089992803 126690.99973068993 126707.69056225335 131046.10007344179 124481.33248938409 119980.13767442443 106172.93286121052 43962.91193677075 94564.67097984905 87314.62021010395 1.232297301883894 1.4509712053472277 1.4511623626989203 1.5008494540560033 1.4256642494675738 1.374112804771044 1.2159811564859135 0.5035000075701345 1.0830336403262066 1.0 16.413935622620894 1.9531077573207702 6.075305915547267 0.8150644811227005 1.4068066114720565 0.7016618119389331 0.15757442860398993 0.09957006385700998 9.082152933965583 0.06569292024491803 0.04090757044184884 89.76514925194485 -1.9531077573207702 0.5917421303493561 AAPAQVRPPS(ph)PGNIRPVK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAPAQVRPPSPGNIRPVK 18 2 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 1 AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK 159.67 2.2164000000000003e-11 9066170000.0 888770.0 788095.0 683868.0 665169.0 624639.0 796537.0 828910.0 802023.0 975950.0 793854.0 True False 883984.9610716308 814326.2656615112 780150.670112786 749379.3271986853 704183.0741245832 741474.2720364111 788812.4565562959 861874.0288502729 735440.1995599946 743189.5580673974 1.1894474989265997 1.0957181203932667 1.0497330884754394 1.008328654599755 0.9475147578173092 0.9976919939033497 1.0613879702609614 1.1596960956926043 0.9895728372078392 1.0 19.50337070620284 4.62647283842915 1.952273005016193 1.0357029920180443 1.215157343273719 0.4617760779752955 0.05432185597392498 0.6699845287259489 3.264833981133506 0.01655971485279275 0.19915329460108117 42312.904562501535 -4.62647283842915 0.17945435125567477 AAPEAS(ph)S(ph)PPASPLQHLLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 2 AAPEAS(0.784)S(0.784)PPAS(0.432)PLQHLLPGK 93.572 0.00078767 353830000.0 163890.0 185620.0 172520.0 166520.0 154430.0 180580.0 166910.0 139640.0 162550.0 158830.0 True False 163007.6344498906 191798.2494903407 196809.31642927811 187601.41492631985 174095.74512167735 168096.92963959646 158835.92564188092 150060.64587755228 122491.73055840701 148693.33341879587 1.0962672683568027 1.2898913830261611 1.3235920663299896 1.2616666168747397 1.170837596540629 1.130494056287986 1.0682114792229345 1.0091955195792495 0.8237876422704719 1.0 17.18198044086383 2.163126267580814 1.0330346444578014 0.9233995993514058 1.247268376647776 0.7404973169980567 0.07393941443935204 0.26018206634247415 0.522358092196544 0.054691187878679846 0.0290005055484846 145.58823049681897 -2.163126267580814 0.3238687772963701 AAPEAS(ph)SPPAS(ph)PLQHLLPGK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 2 AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK;AAPEAS(0.91)S(0.09)PPAS(1)PLQHLLPGK;AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK;AAPEAS(0.564)S(0.564)PPAS(0.872)PLQHLLPGK 175.33 3.0642e-12 2071162000.0 2014670.0 2187180.0 2080790.0 2052890.0 1908710.0 2130750.0 2013790.0 1621560.0 1994500.0 1944940.0 True False 2003823.2405708781 2259978.9641217673 2373747.1454490954 2312785.6635124455 2151772.9046894796 1983456.267745985 1916375.2842751401 1742569.0413148361 1502982.1999307442 1820812.2640530893 1.1005106238192894 1.2411927405910055 1.3036748446350996 1.2701944671463459 1.1817653841476654 1.0893249715546476 1.0524837305353654 0.9570283964563785 0.8254459998995931 1.0 20.79615074936436 2.2624024043311124 1.1907099987712206 0.9160677128730275 1.2334932746713785 0.7823051977848693 0.06683905252220973 0.2103915193392563 0.5781826873320953 0.044087790693798964 0.025604115292981577 182.97948643355755 -2.2624024043311124 0.317425561798351 AAPEAS(ph)SPPASPLQHLLPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 1 AAPEAS(0.882)S(0.118)PPASPLQHLLPGK;AAPEAS(0.887)S(0.113)PPASPLQHLLPGK 246.39 3.1778e-30 597030000.0 384440.0 435300.0 449270.0 393910.0 349110.0 456420.0 440430.0 372470.0 414840.0 404930.0 True False 382370.2177552994 449788.6973555933 512523.31087515556 443778.965611498 393567.08916291356 424868.7596971127 419124.7182940121 400265.6027643365 312608.24057120585 379087.0207219851 1.0086608004332656 1.1865051367333925 1.351993824265036 1.1706519647291134 1.0381972150176777 1.1207684158849192 1.1056161128802928 1.0558673362174629 0.8246345126135736 1.0 18.532169536430516 1.5085344768871325 2.8225750034818122 0.9139271538408203 1.1472675960601193 0.45475882229162456 0.09754071707275638 0.21844483147736263 3.605369048642018 0.07587883678644636 0.027040152394515404 32.250353317007125 -1.5085344768871325 0.23334044221929895 AAPEASS(ph)PPAS(ph)PLQHLLPGK ddPTM_BT-474_Trastuzumab_2h_R1 9 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 2 AAPEAS(0.452)S(0.55)PPAS(0.999)PLQHLLPGK;AAPEAS(0.08)S(0.92)PPAS(1)PLQHLLPGK;AAPEAS(0.428)S(0.572)PPAS(1)PLQHLLPGK;AAPEAS(0.432)S(0.568)PPAS(1)PLQHLLPGK;AAPEAS(0.091)S(0.909)PPAS(1)PLQHLLPGK;AAPEAS(0.08)S(0.92)PPAS(1)PLQHLLPGK;AAPEAS(0.219)S(0.782)PPAS(0.999)PLQHLLPGK;AAPEAS(0.418)S(0.603)PPAS(0.978)PLQHLLPGK;AAPEAS(0.136)S(0.874)PPAS(0.99)PLQHLLPGK 198.55 8.157499999999998e-22 12177090000.0 5320510.0 5951720.0 5370610.0 5437340.0 4955170.0 5661460.0 5160850.0 4145995.0 5411330.0 5011490.0 True False 5291864.965324234 6149819.402309282 6126745.205821038 6125706.686496974 5586181.527906372 5270096.595843331 4911199.969138461 4455390.1998360315 4077780.229607036 4691652.417647551 1.1279320150442085 1.310800301227957 1.305882162705706 1.3056608080034358 1.1906639773428376 1.123292206391926 1.0467953573596132 0.9496420031196633 0.8691565074745419 1.0 22.16166470419295 2.337489312097051 1.2302724046424423 0.9290157486772994 1.266974511973894 0.8337463419987563 0.06076702713901208 0.16829608215290595 0.5029780929928511 0.03657797958452042 0.0229631969521516 217.51505033289152 -2.337489312097051 0.3379587632965946 AAPEASS(ph)PPASPLQHLLPGK ddPTM_BT-474_Trastuzumab_2h_R1 5 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 1 AAPEAS(0.203)S(0.797)PPASPLQHLLPGK;AAPEAS(0.418)S(0.582)PPASPLQHLLPGK;AAPEAS(0.456)S(0.539)PPAS(0.005)PLQHLLPGK;AAPEAS(0.434)S(0.566)PPASPLQHLLPGK;AAPEAS(0.412)S(0.588)PPASPLQHLLPGK 278.19 8.406299999999999e-45 25377910000.0 2640063.0 2850336.0 2714183.0 2685819.0 2555560.0 2889245.0 2949272.0 2511099.0 2915729.0 2698850.0 True False 2625849.194146574 2945207.710695499 3096316.3742984505 3025843.410016777 2880995.418009153 2689518.293701165 2806604.4460468567 2698489.9584823553 2197186.656716906 2526607.0823982693 1.039278806918448 1.1656769789071801 1.2254839289690465 1.197591596689672 1.1402625434242417 1.0644782532423915 1.1108195119055917 1.0680291277901959 0.8696194481618109 1.0 21.268769894726773 1.471785826395795 2.973883722013353 0.9362493362698953 1.1392419590611962 0.6157155173651687 0.06166678510479316 0.15863295313987105 2.7272228858830747 0.048551977154910046 0.016859509978589825 29.63369634647211 -1.471785826395795 0.20299262279130093 AAPEASSPPAS(ph)PLQHLLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 1 AAPEAS(0.036)S(0.036)PPAS(0.928)PLQHLLPGK 55.846 0.061555999999999986 53970000.0 86720.0 159900.0 163990.0 186880.0 193810.0 123270.0 139060.0 103240.0 85336.0 148350.0 True False 86253.10915549779 165222.17483840894 187078.3665733674 210538.98883876213 218490.5546981305 114748.63504636759 132333.13653921243 110944.29304209752 64306.08624381551 138882.17599117523 0.6210524031606363 1.1896571583736375 1.347029345113765 1.5159539900364183 1.5732080314756423 0.8262301064008306 0.9528446367921328 0.798837520007946 0.46302620033762726 1.0 17.083501931501516 2.6498381168009297 9.022421417460327 0.8068525169058753 1.2659935475166955 0.38900531935871596 0.2761067054762821 0.4141638399777331 39.329739991132996 0.09329448342231277 0.0879120050059809 446.51712194081773 -2.6498381168009297 0.4591410306108201 AAPGAEFAPNKR ddPTM_BT-474_Trastuzumab_2h_R1 6 AAPGAEFAPNKR 12 1 Q15233;Q15233-2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;;;; 169.52 6.994e-05 6601770000.0 5679550.0 6329260.0 5947100.0 5579540.0 5263700.0 6219900.0 6652830.0 5873290.0 8004800.0 6265150.0 False True 5648971.933857323 6539925.592981531 6784399.986880132 6285909.191916877 5934000.9946057955 5789932.953069692 6331007.196621382 6311584.723762316 6032124.298824578 5865302.763135219 0.9631168521022332 1.11501926790318 1.1567007298449539 1.0717109492497585 1.0117126488171013 0.9871498858440447 1.07939989669642 1.0760884780632436 1.028442101358837 1.0 22.483774150485036 3.4552446123840928 14.897088746610269 1.0386753001602549 1.0873274071780121 0.13409995471734992 0.05389651974438682 4.941340181613365 3362.2262493002013 0.015408454918415818 0.02089652757642414 2852.624529710652 -3.4552446123840928 0.04865210701775724 AAPHKAEGLEEADTGASGCHSHPEEQPTSIS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAPHKAEGLEEADTGASGCHSHPEEQPTSISPSR 34 1 Q9BV36-2;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 1 AAPHKAEGLEEADTGASGCHSHPEEQPTS(0.003)IS(0.987)PS(0.011)R 243.07 1.7362e-47 548900000.0 70162.0 124110.0 129520.0 175530.0 159590.0 168010.0 169580.0 25016.0 276790.0 107310.0 True False 69784.25558773101 128240.92632392084 147755.29019197854 197752.08000250367 179912.84053596132 156395.8641529993 161376.7675414903 26882.820948674107 208578.81329597946 100461.38392728675 0.6946376095937556 1.2765196069441043 1.4707670192849702 1.9684387400599146 1.790865639141314 1.556775927616103 1.606356206065145 0.2675935757378348 2.0762088390793756 1.0 16.616281528850266 AAPLDSIHSLAAYYIDCIR ddPTM_BT-474_Trastuzumab_2h_R1 3 AAPLDSIHSLAAYYIDCIR 19 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 344.45 3.333e-76 7580378000.0 1038710.0 1526004.0 1324221.0 1474744.0 1474129.0 1490264.0 1514657.0 1342140.0 1448707.0 1395538.0 False True 1033117.700771531 1576796.1206511038 1510659.8064647296 1661446.4391910923 1661850.5903028762 1387245.5573841147 1441387.254358362 1442297.302048826 1091692.571529239 1306473.5700598077 0.7907681597601985 1.2069100797645078 1.1562880727817362 1.2717030617887162 1.2720124068233543 1.0618244327136364 1.1032655289707682 1.1039620969774386 0.8356024925014468 1.0 20.31724650857887 1.348070779629248 5.626132593660892 0.920225679371212 1.1333106935288246 0.26401424178555066 0.13476762752174234 0.2524135767916269 10.740805162799411 0.09327038496011254 0.033097080149569205 22.28798360579388 -1.348070779629248 0.2130850141576126 AAPPPPALT(ph)PDSQTVDSSCKT(ph)PEVSFLPEEATEEAGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVR 38 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 AAPPPPALT(0.706)PDS(0.217)QT(0.076)VDSS(0.009)CKT(0.988)PEVS(0.002)FLPEEATEEAGVR 193.17 5.8265e-24 52185000.0 24237.0 21052.0 17425.0 19149.0 21047.0 25897.0 24935.0 23608.0 33991.0 25779.0 True False 24106.510684983856 21752.703093797267 19878.288539184883 21573.26143660879 23727.210694657388 24106.801344980784 23728.798789049793 25369.748838994958 25614.37350606464 24133.762149487706 0.998870815733782 0.9013390850153472 0.8236713536851876 0.8939037893462761 0.9831542445677518 0.9988828594423065 0.9832200484147678 1.0512140080709915 1.0613502091968021 1.0 14.558765210616462 3.0622417257626924 2.5819562464139043 1.0214952023502475 0.8981779678778032 0.5811120177506426 0.04566022986489634 0.2011425859803557 2.7222909839683775 0.015280637045963028 0.018443656754624692 1154.0954418439374 -3.0622417257626924 -0.12331723447244425 AAPPPPPPPPPLES(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 AAPPPPPPPPPLES(0.5)S(0.5)PR 127.61 0.00021329 0.0 71651.0 87864.0 63339.0 67240.0 73671.0 84148.0 69747.0 74502.0 85708.0 78456.0 True False 71265.23897717452 90788.50012509029 72256.58064754272 75752.57710572745 83052.56516777235 78331.04682308547 66373.07115058579 80061.71755349037 64586.41182836012 73448.870910439 0.9702700408298023 1.2360775461857627 0.9837670715952854 1.0313647598218019 1.1307534634404899 1.0664704011393127 0.9036636006497473 1.0900333328624594 0.8793383891103588 1.0 16.164452692734944 2.4336731156400786 22.211257582878442 0.985384181677508 1.075256606276516 0.22819992747368 0.08907935474342246 70.75378467214699 36168.92956059632 0.029276348529763796 0.024494407561501796 271.43954311725736 -2.4336731156400786 0.08987242459900813 AAPQS(ph)PSVPK ddPTM_BT-474_Trastuzumab_2h_R1 6 AAPQSPSVPK 10 0 O75694;O75694-2;E9PF10 O75694 NUP155 Nuclear pore complex protein Nup155 1 AAPQS(0.992)PS(0.008)VPK;AAPQS(1)PSVPK;AAPQS(0.998)PS(0.002)VPK;AAPQS(0.997)PS(0.003)VPK;AAPQS(0.999)PS(0.001)VPK;AAPQS(0.994)PS(0.006)VPK 210.44 8.084e-08 11203390000.0 6726340.0 6157120.0 5366130.0 5032580.0 5109010.0 6466840.0 6159720.0 5651050.0 7570130.0 6110670.0 True False 6690126.132806634 6362056.017142361 6121634.46076191 5669704.111997947 5759612.140025257 6019802.572103923 5861750.811184512 6072760.046450462 5704572.8960449835 5720681.80899221 1.1694630738403553 1.1121149942550537 1.0700882631051865 0.9910888773932275 1.00680519076797 1.0522876071592606 1.024659473626126 1.0615448034366863 0.997184092126588 1.0 22.447755671543355 4.3122140175505805 1.8930672589125845 1.025269925264904 1.1674865919338702 0.8107408344339332 0.023795466894499673 0.17380766211982188 1.1012134278049202 0.006561920061330278 0.03253111878759849 20521.732275628936 -4.3122140175505805 0.14221666666896615 AAPTRGS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAPTRGSPTK 10 1 Q8IYH5-2;Q8IYH5;Q8IYH5-4 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 1 AAPTRGS(0.914)PT(0.085)K 63.76 0.046323 62551000.0 113320.0 121130.0 109470.0 103220.0 98420.0 114600.0 132040.0 123420.0 189020.0 136310.0 True False 112709.89771103564 125161.7388253688 124882.42446970251 116287.64141661505 110953.20361895666 106677.97173938292 125652.72075821666 132630.22711406118 142438.5537382348 127610.57909913783 0.883233181031753 0.9808100528102252 0.9786212503015453 0.9112696003540095 0.8694671272728852 0.8359649528469514 0.9846575546107337 1.0393356730324348 1.1161970640974637 1.0 16.96138840997539 1.8815018063388933 3.0336351348741957 1.0579174479303903 0.9144144371844419 0.6085848851222344 0.050644552545560786 0.18328439639784935 2.956085477542072 0.028453009329257418 0.014996336553463148 76.12053050415446 -1.8815018063388933 -0.1435030107459484 AAQDRDQIYR ddPTM_BT-474_Trastuzumab_2h_R1 8 AAQDRDQIYR 10 1 P62995;P62995-3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 ;;;;;;; 201.75 2.1547e-07 19583980000.0 8846015.0 11624771.0 10366571.0 11476524.0 10753691.0 10648119.0 11023501.0 9474514.0 12926000.0 10679766.0 False True 8798389.038124654 12011694.47541255 11826094.088949589 12929450.76168548 12123109.806729732 9912039.59650598 10490252.142766759 10181550.34528726 9740560.499526097 9998174.19047231 0.8799995749733004 1.2013887982526859 1.1828253702780236 1.2931811864216678 1.2125323659876184 0.9913849676625546 1.0492167812762625 1.0183409641922119 0.9742339265111319 1.0 23.25323323152679 2.7326535138304315 24.888829475569146 1.0121781893803723 1.1659542922283157 0.3369582339048911 0.1025167371102225 527.2827666459139 2221634.5240860684 0.03318154658642908 0.03204689791884285 540.3230736874089 -2.7326535138304315 0.1537761028479434 AAQEEYVK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAQEEYVK 8 0 P04075;J3KPS3;P04075-2;H3BQN4;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 ; 133.23 0.0021592 388410000.0 354460.0 360630.0 324760.0 279813.0 252026.0 409020.0 398480.0 303970.0 462940.0 380660.0 False True 352551.62674420787 372633.3515445614 370483.3851354765 315237.29711012664 284120.01722486445 380745.41012951406 379204.00005857454 326653.7849283841 348854.6400781847 356365.952900578 0.9892966033221634 1.04564801578708 1.0396149859996224 0.8845887059195979 0.797270375893992 1.0684112975173519 1.0640859402311311 0.9166245604262784 0.9789224734819467 1.0 18.44299998321625 3.783016653466035 24.91258040560572 0.9570415665616206 1.026932715720826 0.13195825360334834 0.07779671417741137 925.947939870295 518886.0522787592 0.021250851447487635 0.038310274345648175 6067.595959596191 -3.783016653466035 0.06989114915920525 AAQEEYVKR ddPTM_BT-474_Trastuzumab_2h_R1 6 AAQEEYVKR 9 1 P04075;J3KPS3;P04075-2;H3BQN4;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 ;;;;; 169.76 9.3354e-05 43892300000.0 15561230.0 16580800.0 14377480.0 14930980.0 13773130.0 18394110.0 18971410.0 14373290.0 21966760.0 17696730.0 False True 15477450.06669517 17132681.904694762 16401704.212703593 16821240.53709215 15527056.465762643 17122568.47077747 18053690.420475896 15445897.885887759 16553346.337503487 16567309.540467199 0.9342162666116701 1.0341257802207768 0.9900040904433457 1.0153272319808295 0.9372105004639625 1.0335153350611335 1.089717698361226 0.932311782318047 0.9991571834322522 1.0 23.9818359983473 AAQGQAGS(ph)PDKSK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAQGQAGSPDKSK 13 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 AAQGQAGS(0.997)PDKS(0.003)K;AAQGQAGS(0.977)PDKS(0.023)K;AAQGQAGS(0.999)PDKS(0.001)K;AAQGQAGS(1)PDKSK 193.3 1.2002e-06 3029500000.0 3140440.0 1816510.0 1571330.0 1504060.0 1528180.0 2079120.0 2651490.0 2621870.0 4772040.0 3053200.0 True False 3123532.2199756876 1876971.437246519 1792559.6057548013 1694473.841785254 1722784.6647674986 1935395.3281220389 2523227.2990245675 2817527.2529860917 3596034.6840599203 2858342.162023968 1.0927775762730731 0.6566643637644316 0.6271326188903518 0.5928170057098452 0.6027216362185307 0.6771041458352214 0.8827590106419909 0.9857207756369603 1.2580840502011832 1.0 21.446747196012733 1.8175862809803276 1.8847329904784997 1.1194818619692495 0.6934500497664914 0.5516005571247735 0.15124589685042814 0.23575231979992645 1.6098434476173862 0.10177298214848357 0.04450282869542089 65.70316355252967 -1.8175862809803276 -0.4260318122027581 AAQLQHSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAQLQHSEK 9 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 90.108 0.011653 339010000.0 129420.0 146230.0 143690.0 141470.0 112140.0 120460.0 148950.0 95491.0 195330.0 131150.0 False True 128723.21709991377 151097.17715209836 163920.30302413047 159380.08749475423 126420.36429414546 112132.883732339 141744.71945574338 102617.02331347279 147193.53878790297 122779.89471683589 1.048406316007884 1.2306345228636162 1.3350744712900728 1.2980959778661516 1.029650372202269 0.9132837586393782 1.1544619726433678 0.8357803494630436 1.1988407314354816 1.0 16.90571481228623 3.18131085627392 6.958671648864214 1.004666506854186 1.2355919733362024 0.40612142171792154 0.120965997829286 0.18778811166971407 18.239524726318535 0.03419530659563687 0.041233268998953465 1518.1366198946916 -3.18131085627392 0.2309254664820164 AAQMHSGYQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAQMHSGYQR 10 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 ; 107.95 0.0022158 931580000.0 356670.0 444030.0 506810.0 439390.0 355030.0 403280.0 467420.0 316890.0 519230.0 391950.0 False True 354749.72834976227 458809.2701281964 578164.4427285101 495016.7289483286 400240.9660723244 375402.20281900826 444809.1088821993 340537.9409348151 391272.72382554016 366935.41543472215 0.9667906487834568 1.250381540807741 1.575657236692558 1.3490568316003613 1.0907667922927087 1.0230743259662063 1.2122272480981897 0.9280596165168931 1.0663258638089885 1.0 18.485166630062423 3.1606217697217347 5.312534095491453 1.0477124565940057 1.3032477053359524 0.35190735979194576 0.1541309273496618 0.2254878679806521 11.073081569258077 0.046866757954151024 0.05690475332425176 1447.5106566884958 -3.1606217697217347 0.25553524874194666 AAQQAASSSGQGQQAQT(ph)PTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAQQAASSSGQGQQAQTPTGK 21 0 P48729-2;U3KPX3;A0A590UJ43;P48729;H0Y9X2;U3KQK7 P48729-2 CSNK1A1 Casein kinase I isoform alpha 1 AAQQAASSSGQGQQAQT(0.997)PT(0.003)GK 146.13 1.5996e-08 0.0 25040.0 25413.0 22241.0 23635.0 25420.0 27993.0 23438.0 22638.0 27004.0 25897.0 True False 24905.187422205523 26258.85634251708 25372.339477762453 26627.18857664885 28657.08632385569 26057.909798434044 22304.214398145145 24327.362513434764 20349.226035061318 24244.231288462845 1.0272624083592705 1.083097089368758 1.0465309943580865 1.0982896615625006 1.1820167025667998 1.07480866225007 0.9199802679971586 1.0034289074371057 0.8393430087735942 1.0 14.565353890495318 2.2798258825005067 7.131802089805433 0.9469508014175078 1.0890283900106725 0.6035448953248013 0.05732109521902168 0.14069869156119522 18.904590450835784 0.020083798035976725 0.01657709159247613 190.4696933087277 -2.2798258825005067 0.14207758859316477 AAQQQQPSAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAQQQQPSASPR 12 0 Q86U86-8;Q86U86 Q86U86-8 PBRM1 Protein polybromo-1 1 AAQQQQPSAS(1)PR 172.33 3.7805e-05 480640000.0 236370.0 254580.0 235140.0 310250.0 252090.0 289600.0 272610.0 255560.0 290410.0 287440.0 True False 235097.4101831757 263053.5414031403 268245.6681264812 349527.6181893508 284192.16724550654 269580.6336450723 259422.8128286692 274631.1849073857 218842.34679462903 269095.33311023505 0.8736584446333296 0.9775477648115891 0.9968425131200406 1.2988988480382402 1.05610217747287 1.0018034520674441 0.9640554142289659 1.0205720840014822 0.8132521075903615 1.0 18.03775784513605 1.8248486389076626 1.3988888002607345 0.9274905922533928 1.0425781865561747 0.12390617133032633 0.11292535725484826 0.8969766971506055 3.3013896105246254 0.0908088085075071 0.03752474150453276 66.81110257331672 -1.8248486389076626 0.11508759430278193 AAS(ph)ALLLR ddPTM_BT-474_Trastuzumab_2h_R1 8 AASALLLR 8 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU Iron-sulfur cluster assembly enzyme ISCU, mitochondrial 1 AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR 127.94 0.0012112 2294505000.0 2109430.0 2364850.0 2162780.0 2093780.0 1878974.0 2269890.0 2382230.0 2080150.0 2644780.0 2253500.0 True False 2098073.063259705 2443562.6026679883 2467280.6247792393 2358852.3333199024 2118250.201348561 2112977.8470463166 2266992.4338976573 2235381.355787671 1993009.4072363188 2109679.700681586 0.9944983888226583 1.158262366499774 1.1695048418876672 1.118109224143274 1.0040624653421115 1.0015633398584938 1.0745671170676987 1.0595832889065928 0.9446976271290976 1.0 21.00859254962397 3.2457872718875262 24.611947358591575 1.0234451687997919 1.117778005282702 0.4076836502399729 0.05571121814293551 142.32445923846885 484712.61799850734 0.01573120395487232 0.0208581122619381 1761.113198572885 -3.2457872718875262 0.09433283648291013 AAS(ph)DSNPAGPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASDSNPAGPLR 12 0 Q9BUU2-2;Q9BUU2 Q9BUU2-2 METTL22 Methyltransferase-like protein 22 1 AAS(0.835)DS(0.165)NPAGPLR 108.66 0.00056967 0.0 146250.0 172900.0 161410.0 135180.0 140800.0 162490.0 147870.0 152760.0 193880.0 169460.0 True False 145462.60624990248 178654.8719797427 184135.12499912962 152293.7741396823 158730.0454130168 151257.44876031703 140716.96318174407 164159.72689956232 146100.87185889823 158644.91771799486 0.9169068151837988 1.1261304462164825 1.1606745910792164 0.9599662966222323 1.000536592638746 0.9534339387360035 0.8869931996931708 1.0347619656582414 0.920930049071003 1.0 17.27544177885978 3.704292641804702 24.593935668047546 0.9669704193728305 1.0737266197044661 0.30375356875308857 0.0710353905114522 558.8012555485343 401048.39739165787 0.01850062146508327 0.028662529676067 5061.6561803989025 -3.704292641804702 0.10675620033163569 AAS(ph)GEDSTEEALAAAAAPWEGGPVPGVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASGEDSTEEALAAAAAPWEGGPVPGVDR 29 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 AAS(0.333)GEDS(0.333)T(0.333)EEALAAAAAPWEGGPVPGVDR;AAS(0.333)GEDS(0.333)T(0.333)EEALAAAAAPWEGGPVPGVDR 69.016 0.00074257 27636000.0 49919.0 54451.0 46964.0 53358.0 45562.0 52640.0 51035.0 46913.0 55659.0 50553.0 True False 49650.241650522315 56263.36861867539 53576.12298159419 60113.117329081004 51364.05063286833 49001.12070123132 48566.24207736738 50413.88627938708 41942.585242389214 47326.66425939924 1.0490965807010497 1.188830218633068 1.1320494233006035 1.2701743989307748 1.085308914892882 1.0353808253346215 1.0261919540995743 1.0652321913724294 0.8862358228439747 1.0 15.530365619267446 2.903063004150953 3.3613454404438614 1.0132417995533889 1.1614972107453894 0.5346248311582991 0.06834561143349939 0.20284849765308405 4.32743517051989 0.021179574054812543 0.02308903624011542 799.9502973140916 -2.903063004150953 0.14825541119200047 AAS(ph)IENVLQDSSPEHCGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 AAS(1)IENVLQDSSPEHCGR;AAS(1)IENVLQDSSPEHCGR 171.52 8.4234e-12 210920000.0 117833.0 169672.0 174229.0 176684.0 160571.0 165712.0 140210.0 141654.0 152941.0 161556.0 True False 117198.60022047716 175319.42995110998 198758.92877438403 199052.17628418157 181018.76507111843 154256.71948408888 133427.5066457859 152224.940784437 115250.73985440366 151245.3577649497 0.7748905616172063 1.1591723048027285 1.3141489544642762 1.3160878404845218 1.196855015890402 1.0199104406484933 0.8821924098533027 1.0064767807353774 0.7620117506913154 1.0 17.206531336280133 2.543662412066034 3.5562569951870557 0.9231404170875109 1.169784836068074 0.34320301878898474 0.15497619616030175 0.2807057620176102 6.957277281587543 0.055489314738489726 0.05023404221728349 349.6732516178876 -2.543662412066034 0.2466444189805631 AAS(ph)LDSVATSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASLDSVATSR 11 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 AAS(0.859)LDS(0.141)VATSR;AAS(1)LDSVATSR 225.1 6.0031e-12 1769360000.0 557700.0 610550.0 512300.0 618620.0 598450.0 576060.0 555200.0 486720.0 722430.0 576370.0 True False 554697.4051662952 630871.7876647309 584427.3870085744 696937.2285714619 674659.060208948 536238.3280993795 528342.8549300358 523041.5179140812 544396.8065660401 539585.5731448168 1.0280063678007616 1.1691783825647508 1.0831041749363501 1.291615757088476 1.2503282033225886 0.9937966372489746 0.9791641608405945 0.9693393299336871 1.0089165345789037 1.0 19.041492250019747 2.716320790149252 21.540372269205495 0.9858745377827383 1.1672553431919956 0.6025509139523326 0.07067791333342957 95.22807662173528 92232.35100861141 0.023765360749589175 0.02243750745780487 520.3802317060404 -2.716320790149252 0.18138080540925738 AAS(ph)LNYLNQPSAAPLQVSR ddPTM_BT-474_Trastuzumab_2h_R1 5 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-3;Q9NSK0;Q9NSK0-5 Q9NSK0-3 KLC4 Kinesin light chain 4 1 AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR 357.75 4.622899999999998e-91 1926020000.0 2182510.0 1261726.0 1100211.0 1555191.0 927024.0 1035597.0 998603.0 1192953.0 1576559.0 1536188.0 True False 2170759.6086596576 1303721.787180526 1255111.1455945554 1752078.0211426758 1045075.0114982695 964008.6169231207 950296.7578560847 1281977.210552591 1188037.1592582688 1438147.166643283 1.5094140982291357 0.9065287735631996 0.8727278923227696 1.218288407320737 0.7266815495228723 0.670312913227908 0.6607785210703653 0.8914089185634585 0.826088725002473 1.0 20.455779884686102 7.557671430861284 0.9691596236190115 0.8269984317149719 199.99999999698446 0.5937776850206984 0.1588375779009714 369.2530134328572 1.5341837440782946 0.04934648372031934 161880.5313508307 36113653.83778121 -7.557671430861284 199.1730015652695 AAS(ph)LTEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASLTEDR 8 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 AAS(0.995)LT(0.005)EDR;AAS(0.934)LT(0.066)EDR 196.37 0.00016011 1291730000.0 1656800.0 1493810.0 1244580.0 1333500.0 1153630.0 1123590.0 1101870.0 1088710.0 1291980.0 1273540.0 True False 1647879.9728877856 1543530.5628227855 1419806.0459167138 1502320.9632731637 1300537.9423992771 1045918.867946362 1048568.3385478354 1169955.0685573628 973588.8406450356 1192261.5868675504 1.3821463268117942 1.2946240823527078 1.1908511198846847 1.2600598558410638 1.0908159389888616 0.8772561990312234 0.8794784215960167 0.9812905837478217 0.8165899592579867 1.0 20.185269372803038 3.049102449823817 2.248425290483397 0.9122180808759073 1.2837041725675364 0.8738942826608942 0.06633618968676001 0.1007290053822029 1.0321128068932266 0.021616067880440834 0.026069140824781414 1119.7019893837241 -3.049102449823817 0.37148609169162916 AAS(ph)LTEDRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AASLTEDRDR 10 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 AAS(1)LTEDRDR;AAS(1)LTEDRDR;AAS(1)LTEDRDR;AAS(0.998)LT(0.002)EDRDR 194.24 2.9369e-07 6525370000.0 3211850.0 3259540.0 2712330.0 3280630.0 2590440.0 2754750.0 2580190.0 2387880.0 3313900.0 3062000.0 True False 3194557.756470082 3368031.818466457 3094202.488005014 3695957.4216294303 2920317.1792591936 2564320.616483989 2455376.3524170206 2566075.731008949 2497233.748984955 2866580.538489911 1.1144140949735697 1.1749301208333418 1.0794053913569832 1.2893262100971452 1.0187459030185109 0.894557324328606 0.8565523694340335 0.8951695919769047 0.871154225550026 1.0 21.450899382408398 2.983066522116879 4.226812400017323 0.8959387308579877 1.1601335597893623 0.7917116476792122 0.06283725707954817 0.08410762538191702 3.5475639466696838 0.018196340119710906 0.020555345247567355 961.7595825434178 -2.983066522116879 0.2641948289313746 AAS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASPFR 6 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 AAS(1)PFR;AAS(1)PFR 75.243 0.08203200000000001 1077270000.0 530430.0 617820.0 587820.0 547390.0 478930.0 536870.0 556200.0 529320.0 729080.0 608200.0 True False 527574.2238163128 638383.765219924 670579.9465769678 616689.5178748383 539918.8966594896 499757.4405560419 529294.4811096642 568820.5462324986 549408.0031714754 569384.1552937826 0.926569906997329 1.1211828767706753 1.1777284990148202 1.0830816280032376 0.9482506522874878 0.8777157493927528 0.9295911665061465 0.9990101427023497 0.964916213532496 1.0 19.119042821052044 3.2440085388218916 9.200335992916214 0.9512143527682925 1.087622946508989 0.44195965907656587 0.06777307237568904 0.11020571191649038 100.90975990015784 0.01970864792056518 0.02542116599416242 1753.9149858637195 -3.2440085388218916 0.13640859374069658 AAS(ph)PPASASDLIEQQQK ddPTM_BT-474_Trastuzumab_2h_R1 8 AASPPASASDLIEQQQK 17 0 Q5VSL9;Q5VSL9-2;Q5VSL9-3 Q5VSL9 STRIP1 Striatin-interacting protein 1 1 AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK 412.67 1.4775999999999995e-140 6837494000.0 1451250.0 1242986.0 1207330.0 1109167.0 1175471.0 1489450.0 1447370.0 1370120.0 1870360.0 1547010.0 True False 1443436.6312490336 1284358.0376090952 1377311.5696995156 1249587.4284745469 1325160.26428753 1386487.8272881669 1377355.183609663 1472365.311728388 1409434.83953997 1448278.4973381052 0.996656812831254 0.8868170313718727 0.9509991153158561 0.8628087973212701 0.9149899461485735 0.9573350911696142 0.9510292296275908 1.0166313415786767 0.9731794279418435 1.0 20.465907622087304 2.1865233736061738 1.7195202709514632 0.9969469113824823 0.9201589251758713 0.412281791390405 0.03637963982613316 0.3237733312841828 1.8807064079484166 0.01907331921184069 0.011271759489284517 153.6467483351758 -2.1865233736061738 -0.07678798620661098 AAS(ph)PQDLAGGYTSSLACHR ddPTM_BT-474_Trastuzumab_2h_R1 4 AASPQDLAGGYTSSLACHR 19 0 H0YJ92;P51948-2;P51948 H0YJ92 MNAT1 CDK-activating kinase assembly factor MAT1 1 AAS(1)PQDLAGGYTSSLACHR;AAS(1)PQDLAGGYTSSLACHR;AAS(1)PQDLAGGYTSSLACHR;AAS(1)PQDLAGGYTSSLACHR 218.25 2.1965e-19 4107340000.0 635560.0 867070.0 837430.0 833940.0 694400.0 739900.0 881400.0 745910.0 953970.0 818930.0 True False 632138.2155773538 895929.9007951173 955332.8649279545 939516.7184942062 782827.7239687421 688752.4545372541 838763.3147250239 801573.5918542334 718876.8760430852 766665.1862787527 0.8245296993928115 1.1686064749382854 1.2460887516817594 1.2254589556289128 1.0210816116073291 0.8983745014956629 1.094041218691854 1.0455327908456615 0.9376673010709892 1.0 19.548237144011324 3.0870778885602226 9.70597640640052 1.0050967757368223 1.1289754116577735 0.18354543470077778 0.11949692916507434 0.5558703596716701 57.143108403952496 0.03534717823565419 0.04227829911900831 1222.0188035215149 -3.0870778885602226 0.12387863592095116 AAS(ph)PS(ph)PQSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR 125.82 0.00058332 3349527000.0 4109231.0 4601700.0 3731520.0 4123010.0 4216570.0 4583160.0 4612800.0 4192600.0 4823690.0 4519050.0 True False 4087107.356874481 4754864.80271361 4256885.5810467275 4644982.643258259 4753525.195931559 4266336.936798165 4389661.2413927745 4505473.101591421 3634956.2336344593 4230640.360046644 0.9660729840031639 1.1239113699234853 1.0062036048367378 1.097938431998282 1.1235947259480952 1.008437629699899 1.0375878987133706 1.0649624449622912 0.8591976448677342 1.0 22.01244461903878 1.2570524599140205 24.999445649347916 0.9295988234591819 1.056251226127183 0.41841715950010705 0.05840441359907585 176.1277026391827 238111.56374101658 0.0359723036962564 0.013085870582723159 18.07392433931735 -1.2570524599140205 0.12665240266800115 AAS(ph)PSPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASPSPAR 8 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 AAS(0.982)PS(0.018)PAR;AAS(0.89)PS(0.11)PAR 103.19 0.0050559 403290000.0 616110.0 660220.0 606660.0 619470.0 604850.0 478680.0 654650.0 627060.0 770830.0 635050.0 True False 612792.9322162563 682195.0235885815 692072.4548167513 697894.8384843105 681874.0622731751 445589.978291516 622982.0784941419 673854.4013461611 580869.2750928131 594520.5653063415 1.0307346254717016 1.1474708587028668 1.164084970652182 1.1738783806825974 1.146930992911612 0.7494946420598835 1.0478730507381775 1.1334417018845109 0.977038153076346 1.0 19.181367190130725 AAS(ph)PSPQSVR ddPTM_BT-474_Trastuzumab_2h_R1 9 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 AAS(0.535)PS(0.465)PQSVR;AAS(0.982)PS(0.018)PQSVR;AAS(0.983)PS(0.017)PQSVR;AAS(0.994)PS(0.006)PQSVR;AAS(0.962)PS(0.038)PQSVR;AAS(0.994)PS(0.006)PQSVR;AAS(0.765)PS(0.235)PQSVR;AAS(0.82)PS(0.141)PQS(0.039)VR;AAS(0.829)PS(0.164)PQS(0.007)VR 142.71 3.7001e-05 12440500000.0 3531044.0 4144564.0 3528595.0 3565481.0 3478767.0 3665790.0 3789230.0 3299256.0 4210571.0 3489260.0 True False 3512033.251439867 4282513.307298159 4025390.5049024457 4016870.5290229986 3921767.3571825516 3412382.565641469 3605930.468635693 3545463.2360025067 3172932.1958107785 3266572.439494219 1.075143232391826 1.3110112776073148 1.2322979451592135 1.229689714043186 1.2005756583771887 1.0446370404600078 1.1038881076196243 1.0853771963347214 0.971333792402308 1.0 21.63934620261605 2.7796881449200512 4.688348872618073 1.0542498512584078 1.2195834778706995 0.6193526680872952 0.06557889084860279 0.14080159921438065 7.362978431891884 0.020019874507124252 0.02081117748827444 602.1270597014203 -2.7796881449200512 0.16533362661229178 AAS(ph)PYSQRPAS(ph)PTAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 2 AAS(0.714)PY(0.271)S(0.066)QRPAS(0.672)PT(0.278)AIR 108.71 0.0123 123050000.0 132120.0 140140.0 130500.0 128200.0 121870.0 147370.0 131420.0 119960.0 148160.0 144380.0 True False 131408.68059991192 144804.47518358106 148873.26567366568 144430.1068553578 137389.42211991703 137182.6587716653 125062.71252684658 128912.02434453722 111647.95324228574 135165.54479006323 0.9722054596385018 1.0713120374610916 1.1014143131290821 1.0685423351023675 1.0164529898008245 1.0149232852553882 0.9252558610339033 0.9537343599270149 0.8260089759982502 1.0 17.044367913811502 2.396372455446039 1.501420269996876 0.9186508140226334 1.0553165445839146 0.5389918675997529 0.05218971612187488 0.2882831362857066 1.3124017931011502 0.025836355378784266 0.018089124282674233 249.09927036311865 -2.396372455446039 0.13666573056128117 AAS(ph)QDHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASQDHVR 8 0 Q9Y314;A0A075B6F9;M0R3B2;A0A075B797;M0R1K2 Q9Y314 NOSIP Nitric oxide synthase-interacting protein 1 AAS(1)QDHVR 67.726 0.037585 50869000.0 14844.0 12213.0 8524.5 14942.0 9655.0 7938.2 5358.6 10831.0 16389.0 15143.0 True False 14764.081553323447 12619.5023220856 9724.67550371773 16833.655667962215 10884.507020331503 7389.450918512815 5099.384046160106 11639.264218703593 12350.150551348703 14176.560775425443 1.0414431107237554 0.8901666999489081 0.6859685968810647 1.1874287378037944 0.7677819178258949 0.5212442591380951 0.35970529996243544 0.8210217134525206 0.8711669033830295 1.0 13.79121995768058 3.0111265177196898 24.96642626632662 0.6800276270218307 0.9341479983598555 0.2194341884348573 0.20635047128968234 308.8862923396254 693094.3930648006 0.06029826028129613 0.07201166913558547 1025.9507604556304 -3.0111265177196898 0.2541203713380248 AAS(ph)REEPIEWEF ddPTM_BT-474_Trastuzumab_2h_R1 2 AASREEPIEWEF 12 1 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 AAS(1)REEPIEWEF;AAS(1)REEPIEWEF 101.3 0.007224500000000002 462910000.0 483490.0 457550.0 405020.0 522470.0 508730.0 482770.0 439500.0 453970.0 616930.0 572580.0 True False 480886.94356078876 472779.27515518473 462043.2955030507 588614.6484299441 573513.7500210514 449397.24621834035 418239.70594695746 487847.54661295033 464895.8679384678 536037.4541895996 0.8971144456459869 0.8819892555268347 0.8619608422728298 1.098084926397228 1.069913577005752 0.8383691152659379 0.7802434376143865 0.9100997379940465 0.8672824339137157 1.0 19.031974283115712 2.6901092508524957 24.99994415828448 0.8685332446971717 0.9594015973844916 0.17332044193934482 0.08861763976976916 684.4076367658034 353140.0372862859 0.03048847694863054 0.028744865302338673 489.90204332513747 -2.6901092508524957 0.09086835268731985 AAS(ph)SDQLRDNS(ph)PPPAFKPEPPK ddPTM_BT-474_Trastuzumab_2h_R1 6 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 AAS(0.991)S(0.009)DQLRDNS(1)PPPAFKPEPPK;AAS(0.925)S(0.075)DQLRDNS(1)PPPAFKPEPPK;AAS(0.99)S(0.235)DQLRDNS(0.775)PPPAFKPEPPK;AAS(0.795)S(0.205)DQLRDNS(1)PPPAFKPEPPK;AAS(0.965)S(0.035)DQLRDNS(1)PPPAFKPEPPK;AAS(0.864)S(0.137)DQLRDNS(0.999)PPPAFKPEPPK 131.13 6.1863e-05 4187480000.0 4847550.0 3089550.0 2809100.0 2893690.0 2672720.0 3983010.0 3790190.0 3769370.0 6320190.0 4378500.0 True False 4821451.329413431 3192383.804077582 3204596.862865096 3260030.857303277 3013075.049547427 3707673.8936970215 3606844.0297681405 4050659.5298730233 4762663.860707097 4099060.3813775554 1.1762333024704321 0.7788086798088907 0.7817881574577195 0.795311743177516 0.7350648122277317 0.9045179989397956 0.8799197118818733 0.988192208213272 1.1618916087072928 1.0 21.966861811132034 1.6212061929318888 2.503660328222721 1.0819783749139464 0.8490741294534488 0.3356660905122649 0.12249039908255878 0.2608169576021261 3.706513800952924 0.08409711690226246 0.03290036130418774 41.80287898986758 -1.6212061929318888 -0.2329042454604976 AAS(ph)VPCSVAPEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AASVPCSVAPEK 12 0 Q9C073;D6RFX7 Q9C073 FAM117A Protein FAM117A 1 AAS(0.993)VPCS(0.007)VAPEK;AAS(0.968)VPCS(0.032)VAPEK;AAS(0.832)VPCS(0.168)VAPEK 212.1 2.5375e-08 805250000.0 1535640.0 1366470.0 1238260.0 1185880.0 1172920.0 1542040.0 1564890.0 1450510.0 1943950.0 1572430.0 True False 1527372.2848656431 1411952.127901443 1412596.2448511359 1336012.2864089853 1322284.4095584918 1435442.4043717086 1489190.2922396667 1558754.4217405359 1464889.570095449 1472076.171174947 1.0375633508465538 0.9591569753992312 0.9595945322066203 0.9075700786207541 0.8982445578907117 0.9751142179184934 1.0116258393416286 1.0588816341591931 0.9951180508045573 1.0 20.48942089352697 2.29277815909911 3.436165136018376 1.0261979764285138 0.9498494019856663 0.36327228444545334 0.03906585968222592 0.22920545284658175 5.534678303719138 0.01563126119234023 0.01220111641655272 196.23576336811578 -2.29277815909911 -0.0763485744428476 AASAPAKES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 AASAPAKESPR 11 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR 191.69 4.5236e-06 8568258000.0 17864660.0 15625040.0 14042922.0 14229002.0 13921872.0 18441870.0 18470100.0 17873150.0 24725510.0 20344900.0 True False 17768478.655510318 16145110.010863874 16020043.354333844 16030392.194267537 15694739.87779974 17167026.934392445 17576630.700366084 19206935.211016744 18632239.365359563 19046471.063854773 0.9329013545837501 0.8476693638803818 0.8411029686615125 0.8416463155050825 0.8240235067788624 0.9013232360387735 0.922828729870172 1.0084248754860679 0.9782515250669551 1.0 24.183020383699436 2.0937602844896217 1.8235220106738275 0.9971588000070238 0.8562305788141992 0.79076828330367 0.03030922299318599 0.14806397608642421 0.9425144351794975 0.01717566729995035 0.009447322553969763 124.09671476381926 -2.0937602844896217 -0.14092822119282467 AASAPAKES(ph)PRK ddPTM_BT-474_Trastuzumab_2h_R1 5 AASAPAKESPRK 12 2 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK;AAS(0.001)APAKES(0.999)PRK 132.84 9.0726e-05 2101780000.0 1902040.0 1365540.0 1312060.0 1198240.0 1173060.0 1968760.0 1912950.0 1716710.0 3021980.0 2007280.0 True False 1891799.627976511 1410991.1734136378 1496786.6433700395 1349937.061141686 1322442.237728645 1832664.25516254 1820413.3003213485 1844819.617476745 2277253.521457364 1879173.6718811335 1.0067188872876973 0.7508572488678894 0.7965132045893831 0.7183673767578603 0.7037360396843064 0.9752500700629572 0.9687307392397834 0.9817185314383431 1.2118377111880965 1.0 20.84166697508332 2.588475391803432 4.525324326427579 1.0247569239263674 0.7892333538746907 0.5716950675664179 0.10114709254750542 0.17535259349752097 5.796756730689493 0.03392226301199729 0.0316094040493272 387.6817808820645 -2.588475391803432 -0.23552357005167668 AASDIAMTELPPTHPIR ddPTM_BT-474_Trastuzumab_2h_R1 5 AASDIAMTELPPTHPIR 17 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 ;;;; 153.23 1.8291e-07 2306790000.0 1248497.0 1362945.0 1396165.0 1421513.0 1308521.0 1348307.0 1463190.0 1214810.0 1439440.0 1450120.0 False True 1241775.2308730583 1408309.800407348 1592732.8963162727 1601476.400048988 1475153.3931383933 1255101.7106632825 1392409.9097713942 1305465.290880188 1084709.2995078024 1357572.1000898061 0.914702969213136 1.0373738531560759 1.1732215889019155 1.1796621335566981 1.0866114536685079 0.9245193758624349 1.0256618485893187 0.9616176487376464 0.799006770569347 1.0 20.372597390322337 2.7451627522653372 23.469292200354356 0.9486085434765642 1.0869429932972368 0.36425608659472863 0.08937179796844602 264.3744788700041 939798.8517914718 0.02900036451945838 0.03007427511675199 556.1126219533668 -2.7451627522653372 0.13833444982067256 AASDPLLS(ph)SVSPAVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 AASDPLLS(0.892)S(0.042)VS(0.066)PAVSK;AASDPLLS(0.465)S(0.226)VS(0.309)PAVSK 291.52 1.604e-45 1357870000.0 978440.0 958800.0 919750.0 834950.0 887990.0 1108530.0 1020070.0 1011520.0 1336670.0 1016590.0 True False 973172.187754903 990713.0783931597 1049242.8053896858 940654.5843906486 1001070.2629709142 1031899.9302989369 970725.3170541804 1087004.7587944835 1007265.5889603551 951710.3558535136 1.0225508021105245 1.0409817149721647 1.1024812317490262 0.9883832603114318 1.0518644215793298 1.0842583817147893 1.0199797775486155 1.1421592211420617 1.0583740975026152 1.0 19.860163044026287 2.990160798614913 24.514988425485996 1.0717902518665035 1.0404313605102915 0.024892577165157803 0.04472651710473959 910.9505840083874 2269698.4435772076 0.013067768910483533 0.014797680535991767 977.5991124652617 -2.990160798614913 -0.03135889135621195 AASDPLLSSVS(ph)PAVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 AASDPLLS(0.184)S(0.103)VS(0.713)PAVSK;AASDPLLS(0.048)S(0.158)VS(0.794)PAVSK 277.34 2.6209999999999997e-35 692100000.0 886490.0 875600.0 730580.0 695160.0 775120.0 962780.0 885120.0 833430.0 1158090.0 839360.0 True False 881717.2363382981 904743.8166886219 833439.3136848029 783167.1847236392 873826.9375038163 896225.2847403412 842303.3641132442 895624.778671789 872694.237110953 785791.32618775 1.1220755523173445 1.1513792358563786 1.060636947633688 0.9966605110330732 1.112034338356939 1.140538530869715 1.071917360299281 1.1397743253503365 1.1105928610141456 1.0 19.58378671739887 AASEQQADTSGGDS(ph)PKDESKPPFSYAQLIVQAISSAQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASEQQADTSGGDSPKDESKPPFSYAQLIVQAISSAQDR 39 2 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 AAS(0.001)EQQADT(0.013)S(0.013)GGDS(0.972)PKDESKPPFSYAQLIVQAISSAQDR;AAS(0.002)EQQADT(0.018)S(0.018)GGDS(0.956)PKDES(0.005)KPPFSYAQLIVQAISSAQDR 100.68 3.0746e-05 532890000.0 129992.0 92502.0 80442.0 80037.0 79596.0 125471.0 125888.0 122736.0 209134.0 115623.0 True False 129292.1375154688 95580.8731513601 91767.53438560176 90169.6759936215 89732.07879754588 116797.48509696416 119798.31650113895 131895.18356077967 157595.72795202638 108243.84115016945 1.1944526001816447 0.883014424984774 0.8477852726816144 0.8330236162677079 0.828980917935629 1.0790219919757653 1.1067448755346707 1.2185005831213815 1.4559325156744003 1.0 16.723925415371426 2.2574429327399694 1.7605952996334768 1.23891067314515 0.9099513323008704 0.44476350480852744 0.1462130150130738 0.30281859760427887 1.8828763121189784 0.073732569190902 0.04715979117129075 180.9018185625719 -2.2574429327399694 -0.3289593408442796 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(ph)PFAK ddPTM_BT-474_Trastuzumab_2h_R1 3 AASGEDSTEEALAAAAAPWEGGPVPGVDRSPFAK 34 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK 272.25 6.603999999999998e-74 254059000.0 135445.8 128645.0 144027.0 120104.0 126725.0 133183.0 124551.9 105440.0 137827.0 104531.5 True False 134716.57486224294 132926.87105745522 164304.74969487413 135309.15408545936 142862.6775920777 123976.37268905944 118526.84876253657 113308.46821347116 103861.38263717972 97860.21017608026 1.3766225784703188 1.3583342077263003 1.6789740120038568 1.3826779427716032 1.4598648146680282 1.2668721277625326 1.2111853075858998 1.157860462486181 1.0613239277771989 1.0 16.578434760825033 2.103654816886454 0.8394943874136809 1.0241169664924128 1.4688517439788418 0.7784271217547425 0.08946424097323194 0.28298249109436974 0.37276447541807656 0.07401543310555977 0.03963487461075188 126.95646369902614 -2.103654816886454 0.444734777486429 AASIENVLQDSS(ph)PEHCGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 AASIENVLQDS(0.318)S(0.682)PEHCGR 112.64 0.0001739 185030000.0 125860.0 162960.0 159720.0 160740.0 159070.0 165290.0 151760.0 122970.0 155600.0 152090.0 True False 125182.38374436052 168384.02508859997 182207.18768887265 181089.66751895662 179326.62161824244 153863.89135080797 144418.78902050096 132146.64582900752 117254.46493317813 142383.4859892 0.8791917326273061 1.1826092325157156 1.2796932623400816 1.271844598134734 1.259462221846743 1.0806301747836036 1.0142945160891434 0.9281037397766131 0.8235116883012125 1.0 17.119422302882572 2.189183369384233 1.8781296073453086 0.9122788651466656 1.1844486761006519 0.47792044065089123 0.11620871345600713 0.2924822052225077 2.04446183196116 0.06235751182227983 0.038049038222986595 154.59070202050304 -2.189183369384233 0.2721698109539863 AASIFGGAKPVDTAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASIFGGAKPVDTAAR 16 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ; 156.98 1.0112e-07 2382900000.0 2845600.0 3058700.0 2729300.0 2659700.0 2666300.0 3170300.0 2802700.0 2741800.0 3701600.0 3066100.0 False True 2830279.605775881 3160506.980476803 3113561.7164991265 2996417.7472948143 3005837.500601748 2951144.623083467 2667122.6936462726 2946407.0385782965 2789390.2788987956 2870418.8729797225 0.9860162335254667 1.1010612458787057 1.0847063980132636 1.0438956402848254 1.0471773053392206 1.028123334494364 0.9291754310678664 1.0264728490722652 0.9717711603544423 1.0 21.452829850432817 2.468833394869471 24.619192792243553 0.9856454197371104 1.0546767251712112 0.45638598705620914 0.03632399877331803 142.89957672256145 424480.3641667571 0.012259710061818812 0.010273631492451496 294.3292304072065 -2.468833394869471 0.06903130543410085 AASLTEDRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AASLTEDRDR 10 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 180.67 1.7978e-06 3469000000.0 2215090.0 3350590.0 3292950.0 3200560.0 3018510.0 2719580.0 3070380.0 2410230.0 3207340.0 2938130.0 False True 2203164.2015596353 3462112.362675576 3756568.737165501 3605750.567839188 3402899.3563895226 2531581.8358027097 2921853.989409375 2590093.601499948 2416934.033154112 2750616.0279403534 0.8009711930637418 1.2586679956445928 1.3657190603875013 1.3108883723545939 1.2371408156657895 0.9203690410029148 1.0622544040060886 0.9416412815129985 0.878688267865544 1.0 21.391323330116386 2.7414887608841574 24.88661874994044 0.9642413179684552 1.214190993874574 0.37378381573105823 0.15040171569288627 255.433606887303 2170962.164439794 0.04763180984194703 0.04855691599205523 551.4279317822852 -2.7414887608841574 0.24994967590611883 AASPS(ph)PQSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 AAS(0.297)PS(0.702)PQSVR 108.98 0.0021806 1018800000.0 251060.0 325870.0 273470.0 280440.0 294700.0 270000.0 274230.0 263240.0 291620.0 280940.0 True False 249708.32085538824 336716.3859574254 311972.1989561488 315943.6752458392 332228.2981762503 251335.53551163475 260964.44723966785 282884.3055056351 219754.15850779813 263010.16867516533 0.9494245873200221 1.2802409414568758 1.186160217787833 1.2012603042586165 1.2631766286822692 0.9556114760796587 0.9922218922340448 1.0755641385676447 0.8355348373591167 1.0 18.004759053473908 2.7298051945001895 24.95377981319448 0.9863355606568922 1.1838027508460007 0.5005856994913681 0.10134689367105823 531.3202950995285 1514309.4905485958 0.03146961798828118 0.030078737993677076 536.7909614250146 -2.7298051945001895 0.19746719018910852 AASPYS(ph)QRPASPTAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 AASPYS(0.632)QRPAS(0.359)PT(0.008)AIR 119.45 0.00050964 149160000.0 94408.0 124980.0 125010.0 118560.0 122310.0 130850.0 131600.0 105040.0 118660.0 128910.0 True False 93899.71781771476 129139.88374799449 142610.32139360128 133569.68384376928 137885.4535118329 121804.64748776835 125234.00523917982 112878.6181823123 89417.83296253804 120682.85343459647 0.7780700832418027 1.070076486200927 1.181694974347688 1.1067826127939273 1.1425438625923714 1.009295388874608 1.0377116688498738 0.9353326920090298 0.7409323728908815 1.0 16.88086118762898 1.6278853367287889 3.180794669598069 0.8624273322641046 1.0583551114182495 0.26691795746821123 0.11854730180521486 0.24312310884983743 5.809263304165836 0.07441457152369536 0.0314765539012423 42.45074698640001 -1.6278853367287889 0.19592777915414483 AASPYSQRPAS(ph)PTAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 AASPYS(0.229)QRPAS(0.741)PT(0.03)AIR 187.71 3.4106e-09 132090000.0 62081.0 78614.0 69378.0 71407.0 75959.0 77988.0 76147.0 65352.0 74312.0 69038.0 True False 61746.76279384752 81230.61946683348 79145.81935561364 80447.11887847532 85631.9284057339 72596.87312400507 72463.4787002115 70228.89809073192 55998.80332978368 64631.93573359449 0.955359948499155 1.2568186074707228 1.2245621062912881 1.2446961082841341 1.3249166597562387 1.1232353216719542 1.1211714128275183 1.0865974737350816 0.866426213205255 1.0 15.979959580687758 1.615755387358567 1.58553691556885 0.93807918378556 1.1994661956865496 0.4723794862621783 0.10120482125200143 0.2982262585173838 1.4858386575193903 0.0818621988231551 0.029277908116224743 41.28149220333834 -1.615755387358567 0.26138701190098956 AASPYSQRPASPT(ph)AIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 AASPYSQRPAS(0.044)PT(0.956)AIR 151.44 1.0101e-07 0.0 65003.0 92335.0 81723.0 84498.0 90241.0 91359.0 91817.0 79338.0 84874.0 78142.0 True False 64653.03107051225 95408.31465731384 93228.8880509502 95195.43813622482 101732.65644968768 85043.5673659535 87375.46093499837 85258.60443020082 63957.93995333259 73154.91065926793 0.8837825169611004 1.304195628119828 1.2744036895237343 1.3012856864744813 1.3906469918817304 1.162513447143133 1.1943895515362624 1.1654529225974728 0.8742808839071395 1.0 16.158667090748278 1.3704514774790844 3.8479846098516624 0.9389241120344984 1.2264876022218356 0.40621639425188194 0.13157414074074777 0.20990106235693595 4.947234173164876 0.09884614358469886 0.03309368787547523 23.46667061420896 -1.3704514774790844 0.2875634901873372 AASSELPADISKPWIPS(ph)SPAPSSENGGPAS(ph)PGLPAEASGSGPGSPHLHPPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 AASSELPADISKPWIPSSPAPSSENGGPASPGLPAEASGSGPGSPHLHPPDK 52 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 AASSELPADISKPWIPS(0.508)S(0.471)PAPS(0.01)S(0.011)ENGGPAS(0.999)PGLPAEAS(0.001)GS(0.001)GPGSPHLHPPDK 105.61 4.5414e-10 112130000.0 67130.0 72693.0 86582.0 70582.0 76275.0 106000.0 92975.0 15247.0 83419.0 53312.0 True False 66768.57953884419 75112.5425611535 98771.99301576501 79517.6739630645 85988.16913265517 98672.46949716035 88477.44405100885 16384.808562697235 62861.50520733153 49909.58251730051 1.337790784278745 1.5049723674830724 1.9790186179483065 1.593234604507075 1.7228789502065758 1.9770245415889187 1.7727546412623125 0.3282898340617787 1.259507734522552 1.0 15.607029215612071 1.7563814375327222 24.9999999999868 0.8142090100858044 1.7092373524929505 0.6427185482036508 0.2847442182569975 3.8802237748114576 5449.078597277797 0.12695357968099352 0.07040315410185498 57.06652631906328 -1.7563814375327222 0.8950283424071461 AASSS(ph)SPGSPVASSPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 AASS(0.003)S(0.987)S(0.01)PGSPVASSPSR;AASS(0.036)S(0.884)S(0.079)PGS(0.001)PVASSPSR 232.78 7.3479e-19 142310000.0 308950.0 360710.0 302860.0 329100.0 308320.0 312530.0 284150.0 272370.0 322650.0 281230.0 True False 307286.6475275718 372716.01429620077 345500.0554936894 370764.0262566166 347582.7244441852 290925.5367164862 270404.57894158765 292695.63246683555 243137.23078849565 263281.66062688344 1.1671403423843152 1.4156550570546769 1.312283030542427 1.408240989417241 1.320193452200878 1.1049973477977222 1.0270543656468296 1.1117205496574138 0.9234871514011909 1.0 18.00624750571778 2.6625857635419097 3.0866882279178895 1.0360922738215956 1.336272297379004 0.7805965062100055 0.07793224919116393 0.11771338394961753 2.1972905028536798 0.02573862780048357 0.024512491446202687 459.8177833942825 -2.6625857635419097 0.30018002355740836 AASSSS(ph)PGSPVASSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 AASS(0.001)S(0.327)S(0.672)PGSPVASSPSR 306.72 3.5166999999999997e-47 187470000.0 177960.0 181300.0 156430.0 189800.0 180400.0 178140.0 170620.0 151080.0 183240.0 138330.0 True False 177001.88313321467 187334.4609018358 178453.98428606533 213828.6605393675 203372.87068542754 165825.60109645443 162366.45876830458 162354.35676869523 138082.95729020282 129501.6609697288 1.366792377856753 1.4465795998217004 1.378005370354124 1.6511653899894787 1.5704267355533474 1.2804901485797653 1.2537789674084412 1.2536855168726044 1.066263986548249 1.0 16.98261107626697 1.7281312289156763 0.8764621689339869 1.0130084113088969 1.4757013853679948 0.7464744578801051 0.09693577409373193 0.30029834473873124 0.4381344032786696 0.09260415876582738 0.03956876700203212 53.472591084130954 -1.7281312289156763 0.46269297405909793 AASSSSPGS(ph)PVASSPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 AASSSSPGS(1)PVASSPSR;AASSSSPGS(1)PVASSPSR;AASSSS(0.001)PGS(0.999)PVASSPSR;AASSSSPGS(1)PVASSPSR 355.2 7.928099999999997e-88 792040000.0 520700.0 667002.0 561650.0 628718.0 575000.0 593995.0 577256.0 502950.0 540970.0 583563.0 True False 517896.60905520804 689202.758358777 640725.4380506851 708313.6343360906 648222.8417079869 552933.5237638288 549331.9219479342 540482.6829283518 407655.19212661544 546319.5097265798 0.9479738501639878 1.2615378841288443 1.1728035090149962 1.2965190181302242 1.1865269868037613 1.0121064943123836 1.005514011796617 0.9893160930658523 0.7461845767335628 1.0 19.059385418767256 2.3504620280416866 1.401522534579866 0.9151303912124488 1.1844046240878094 0.5109308607350294 0.11060704629278645 0.3363738383266202 1.3209163456132764 0.059968395089948175 0.039311700652850425 224.11040892713163 -2.3504620280416866 0.2692742328753607 AASVAAATTS(ph)PTPR ddPTM_BT-474_Trastuzumab_2h_R1 6 AASVAAATTSPTPR 14 0 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 AASVAAATT(0.006)S(0.931)PT(0.063)PR;AASVAAATT(0.002)S(0.997)PT(0.002)PR;AASVAAATT(0.061)S(0.936)PT(0.003)PR;AASVAAATT(0.026)S(0.974)PTPR;AASVAAATT(0.014)S(0.985)PT(0.001)PR;AASVAAATT(0.032)S(0.967)PTPR 306.65 1.2217e-44 9148070000.0 4029200.0 5253150.0 4989540.0 4999580.0 4856450.0 5531790.0 5383500.0 4695830.0 5896990.0 5280640.0 True False 4007507.2348862 5427997.922153763 5692023.862140866 5632526.315381517 5474890.121065652 5149390.377732987 5123079.538032861 5046256.6795415785 4443755.830117624 4943625.034216644 0.8106414234794854 1.0979792934505743 1.151386649016517 1.1393514427968816 1.1074646809116644 1.0416223605334476 1.0363001851018527 1.0207604024606605 0.89888610065706 1.0 22.23713789068314 1.5493729790103892 2.3917741253284377 0.9507348066390316 1.0664912297765954 0.15266504166324812 0.0937751762417514 0.4513905188816405 5.525464848554532 0.07191830361443845 0.025657145318939083 35.4301490217178 -1.5493729790103892 0.11575642313756374 AAT(ph)PLPSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 AATPLPSLR 9 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 AAT(0.998)PLPS(0.002)LR;AAT(0.996)PLPS(0.004)LR;AAT(0.999)PLPS(0.001)LR;AAT(1)PLPSLR 116.52 0.014542 1557180000.0 1991790.0 1711300.0 1565380.0 1489680.0 1364280.0 1773300.0 1656880.0 1697700.0 2356360.0 1770650.0 True False 1981066.4239486728 1768259.5859973028 1785771.8974731257 1678273.3352596664 1538012.9712789091 1650715.944899194 1576730.3845037431 1824390.9947459232 1775666.65160632 1657645.6010702688 1.1951085459217492 1.0667295740751916 1.0772941431631293 1.012443995372762 0.9278297908104615 0.995819579187131 0.9511866610605535 1.1005917028151218 1.0711979994154661 1.0 20.660704165886123 4.9543460655001335 1.141068504045392 1.0134397826137174 1.3489733030736513 0.5501196405793396 0.05000864079210505 2.1054080251269216 1.6613606186023984 0.016008263277968737 0.9466775180522523 90021.46275653105 -4.9543460655001335 0.3355335204599339 AAT(ph)PTLTTFPTIR ddPTM_BT-474_Trastuzumab_2h_R1 2 AATPTLTTFPTIR 13 0 Q8N9Z2 Q8N9Z2 CCDC71L Coiled-coil domain-containing protein 71L 1 AAT(0.991)PT(0.009)LTTFPTIR;AAT(0.842)PT(0.142)LT(0.013)T(0.003)FPTIR 215.25 3.2934e-10 1073260000.0 361450.0 425020.0 359460.0 337480.0 398530.0 351280.0 344520.0 409140.0 456150.0 371940.0 True False 359503.99336087034 439166.5337699844 410068.8435176699 380204.93339739565 449280.43322762416 326996.8404241748 327854.2514057925 439672.10437082394 343737.94459684606 348202.47076614527 1.0324567558922213 1.261238993519179 1.177673560487382 1.0919076265048775 1.290285023650402 0.939099713177474 0.9415621051867298 1.2626909378426272 0.9871783616024437 1.0 18.409566914500548 2.737308523057812 24.99801790547752 1.0533702189756045 1.1717503331057342 0.28061735125559417 0.11156839192587299 189.01315305026614 3773610.33172931 0.03628039322354714 0.036018150714594466 546.145705545995 -2.737308523057812 0.11838011413012972 AATAARPPAPPPAPQPPS(ph)PTPS(ph)PPRPTLAR ddPTM_BT-474_Trastuzumab_2h_R1 6 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 AATAARPPAPPPAPQPPS(0.982)PT(0.02)PS(0.99)PPRPT(0.009)LAR;AATAARPPAPPPAPQPPS(0.826)PT(0.202)PS(0.913)PPRPT(0.059)LAR;AATAARPPAPPPAPQPPS(0.954)PT(0.048)PS(0.998)PPRPTLAR;AATAARPPAPPPAPQPPS(0.983)PT(0.108)PS(0.908)PPRPT(0.001)LAR;AATAARPPAPPPAPQPPS(0.99)PT(0.011)PS(0.995)PPRPT(0.004)LAR;AATAARPPAPPPAPQPPS(0.93)PT(0.074)PS(0.996)PPRPTLAR 125.93 8.643099999999999e-06 25662660000.0 1137206.0 1171661.0 1139422.0 1280730.0 1186060.0 1219560.0 1196329.0 1188923.0 1328942.0 1226386.0 True False 1131083.4092514655 1210659.0281009688 1299842.7135664343 1442870.2866837957 1337097.7106716074 1135254.6877354435 1138457.9958494133 1277646.4714886667 1001442.0510104607 1148116.9955181214 0.985163893285136 1.0544735709226423 1.1321517917081632 1.2567275742074162 1.164600572843365 0.9887970408652705 0.9915870946023675 1.1128190563123677 0.8722473884802399 1.0 20.13083823246455 2.732158301225995 24.85324058244363 1.009209997897946 1.123483619807332 0.34001287628620525 0.08586041182025086 658.7046504971906 2557026.560838072 0.02938679280781242 0.028336192869029074 539.7073110838658 -2.732158301225995 0.11427362190938584 AATAARPPAPPPAPQPPSPT(ph)PSPPRPTLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 AATAARPPAPPPAPQPPS(0.39)PT(0.608)PS(0.003)PPRPTLAR;AATAARPPAPPPAPQPPS(0.384)PT(0.598)PS(0.018)PPRPTLAR 228.33 2.2775e-33 2169750000.0 352480.0 371780.0 376280.0 378750.0 362340.0 373700.0 404100.0 342990.0 393300.0 393670.0 True False 350582.28684420977 384154.4725542442 429256.9533156087 426699.7111658876 408481.8512425596 347866.9985951774 384552.1391880897 368585.6554679298 296376.4849499936 368545.64356215677 0.9512588005536486 1.0423524989773891 1.164732132407401 1.157793393083272 1.1083616327530064 0.9438912239821611 1.0434315149440463 1.0001085670295442 0.804178505775794 1.0 18.491483779409617 2.740750812413846 24.942586564643637 0.9689026717408549 1.091020747580647 0.3685417887859427 0.08206685545028174 229.00082669979201 2607939.376035446 0.02681216664290074 0.027213045084389122 550.4917470279096 -2.740750812413846 0.12211807583979217 AATDDDLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AATDDDLHR 9 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 0 90.906 0.011113 84627000.0 190580.0 185710.0 158200.0 150080.0 133380.0 150000.0 160850.0 166980.0 252230.0 192150.0 False True 189553.93845542867 191891.24508593426 180473.1849009497 169080.11261195075 150365.1523948022 139630.85306201928 153069.0709933289 179440.8955072592 190071.2962088404 179886.82249210833 1.053739989563407 1.0667331960591642 1.0032596184685352 0.9399249498632304 0.8358875336819002 0.7762150174626877 0.8509187547633962 0.9975210691996703 1.0566160076410203 1.0 17.45672998108405 3.8674637286705242 2.5154870762668304 0.9125392154612778 1.0585809289110333 0.32714364775589533 0.08030301138657621 0.3547027096790387 4.352639878723572 0.024443979044711402 0.05288382379122437 7369.936206650799 -3.8674637286705242 0.14604171344975547 AATEALGEKS(ph)PDSATVSGYDIMK ddPTM_BT-474_Trastuzumab_2h_R1 2 AATEALGEKSPDSATVSGYDIMK 23 1 A0A494BZV2;Q6WCQ1-2;J3KSW8;H0Y2S9;Q6WCQ1-3;H7C3G6;J3QRL2;K7EL39;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 AATEALGEKS(0.998)PDS(0.002)ATVSGYDIMK;AATEALGEKS(0.979)PDS(0.021)ATVSGYDIMK 266.36 2.4244e-44 370799000.0 368800.0 296271.0 266006.0 232546.0 254955.0 404310.0 374180.0 312520.0 618630.0 384550.0 True False 366814.4217775323 306132.20113539835 303457.3326343999 261986.29975652142 287422.00801332114 376361.001343367 356079.4838935896 335841.8293444048 466176.92571730085 360007.6897701813 1.018907185042898 0.8503490615181705 0.842919029946606 0.7277241770134578 0.7983774129847149 1.0454248951838367 0.9890885500831957 0.9328740437705558 1.294908244918032 1.0 18.45766819731071 2.7329003461551826 24.554638271001696 1.033483628783236 0.840879046170012 0.44529380555036724 0.11318041787247231 376.6437367487975 1633901.3618222636 0.03668240315331338 0.035498478575771326 540.6302549054299 -2.7329003461551826 -0.1926045826132241 AATEALGEKSPDS(ph)ATVSGYDIMK ddPTM_BT-474_Trastuzumab_2h_R1 1 AATEALGEKSPDSATVSGYDIMK 23 1 A0A494BZV2;Q6WCQ1-2;J3KSW8;H0Y2S9;Q6WCQ1-3;H7C3G6;J3QRL2;K7EL39;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 AATEALGEKS(0.316)PDS(0.652)AT(0.03)VS(0.001)GYDIMK 124.08 3.5872e-05 330980000.0 250440.0 175150.0 156470.0 156390.0 148370.0 233000.0 240350.0 212500.0 407970.0 218060.0 True False 249091.6588664995 180979.7618695892 178499.61593837902 176188.95796497216 167264.04004211136 216893.25842300366 228723.3522738367 228357.82905313582 307431.2600179222 204143.22410944148 1.2201808801303202 0.8865332790696284 0.8743842305668942 0.8630654224923822 0.8193465189539716 1.062456318935802 1.1204062896117375 1.1186157662069296 1.5059586785653383 1.0 17.639222157082223 2.156909772511264 1.5939607300548844 1.223535262584014 0.9261841649436011 0.36015078720177685 0.15893859666603313 0.39972525759994315 1.9651588880137614 0.09088365870340391 0.05095372093733096 143.51912321131738 -2.156909772511264 -0.2973510976404128 AATFGLILDDVSLTHLTFGK ddPTM_BT-474_Trastuzumab_2h_R1 4 AATFGLILDDVSLTHLTFGK 20 0 P35232;C9JW96;C9JZ20;E7ESE2;E9PCW0 P35232 PHB Prohibitin 0 ;;; 350.86 4.160599999999998e-95 740850000.0 1042209.0 1459262.0 1571399.0 1297839.0 1646526.0 2148679.0 1563176.0 1593431.0 2026209.0 1693600.0 False True 1036597.8625443055 1507832.6535274943 1792638.3203550414 1462145.2843295678 1856201.3263758018 2000145.8781763124 1487559.2049677826 1712340.9124986685 1526876.9417595766 1585512.998036093 0.6537933551022885 0.9510061761683328 1.1306361553487771 0.9221906639306423 1.1707260228550624 1.261513390715691 0.9382194954001376 1.079991721682302 0.9630176123758389 1.0 20.59651827402884 4.688017457709105 2.769529222972188 1.062032401699609 0.600859782677486 0.5819567820541762 0.10304389166086343 0.2557492774096212 2.8712892197599813 0.02507247350148482 0.2530243253725615 48754.80880996356 -4.688017457709105 -0.46117261902212303 AATFPLQVLGFEIDAVNSVQFSNHTGYAHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 AATFPLQVLGFEIDAVNSVQFSNHTGYAHWK 31 0 O00764;O00764-2 O00764 PDXK Pyridoxal kinase 0 201.1 5.8187e-26 113850000.0 40500.0 70145.0 75530.0 65314.0 66807.0 84215.0 78092.0 43821.0 80951.0 77716.0 False True 40281.952499973 72479.733921452 86163.967481471 73582.74570320468 75314.47545388786 78393.4152707865 74314.39161959004 47091.14553852924 61001.710737825895 72756.09834398492 0.5536574035281991 0.9962014947362036 1.1842851588068228 1.011361897875714 1.0351637480312255 1.0774823974225336 1.021418043450291 0.6472467134766646 0.8384412046041112 1.0 16.150780557905662 -1.082831409907258 5.455632879750763 1.0000006745839114 0.9319586869895473 0.01258580861012537 0.18623918933699252 1.6123480824401631e-06 2.711444815702869e-07 0.19035626490043597 0.044866956983379634 0.08263586740027996 1.082831409907258 -0.06804198759436408 AATMEIPIHGNGEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AATMEIPIHGNGEAR 15 0 A0A087X1E4;P53365;E9PRV8;E9PPY7 A0A087X1E4 ARFIP2 Arfaptin-2 0 ; 131.86 5.0992e-05 1032940000.0 594290.0 776580.0 750620.0 757280.0 735130.0 803800.0 787740.0 664170.0 808710.0 794700.0 False True 591090.4086718264 802427.9958474761 856300.7714939994 853151.5703543329 828744.4480431164 748235.197941675 749634.0067409702 713733.7379869225 609414.2566588079 743981.5656231006 0.7944960412786242 1.0785589763577346 1.15097041521026 1.1467375130992663 1.113931428326487 1.0057173894019966 1.0075975553414895 0.9593433103267217 0.8191254794712692 1.0 19.504907349112028 1.8918914184614832 1.633496151523753 0.9117269671889296 1.0637255438998106 0.21413503794666644 0.10473416306663734 0.5316179452312114 2.65616729154431 0.07323208084114445 0.03276822785339272 77.96351631490086 -1.8918914184614832 0.1519985767108809 AATSDLEHYDK ddPTM_BT-474_Trastuzumab_2h_R1 4 AATSDLEHYDK 11 0 P80303-2;P80303;E9PKG6;Q2L696;E9PLR0;E9PLE9;A0A2R8Y6G7 P80303-2 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 0 ;;; 164.04 2.3244e-05 2950960000.0 4436620.0 5344260.0 4847780.0 4598250.0 4605790.0 5371660.0 5226940.0 4839990.0 6944700.0 5126580.0 False True 4412733.730874821 5522140.463426604 5530305.286340872 5180387.978530802 5192310.055843872 5000329.787727509 4974092.943350151 5201174.630771231 5233271.739212351 4799397.275314046 0.9194349785486503 1.1505904068058765 1.1522916251976658 1.0793830311102608 1.081867109136973 1.0418661971258287 1.0363995014404541 1.0837141275059157 1.090401864861232 1.0 22.194421807967643 2.861951220915363 6.202820119990029 1.0567933681915964 1.085582976307057 0.02636375732803453 0.06483949147466922 0.9214551606399299 42.97505538679083 0.019630123592939395 0.020882545864623153 727.6980663601538 -2.861951220915363 0.028789608115460608 AATTATPAATTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 AATTATPAATTSPK 14 0 Q92766;Q92766-2;Q92766-5;Q92766-3;A0A087X055 Q92766 RREB1 Ras-responsive element-binding protein 1 1 AATTATPAATT(0.019)S(0.981)PK 261.61 1.7035e-24 364320000.0 518210.0 638260.0 579640.0 543700.0 545520.0 844120.0 826850.0 709400.0 1138000.0 748690.0 True False 515420.014938544 659504.0982636817 661248.2736788017 612532.3642531832 614988.7384496366 785767.9712447448 786852.1066262604 762339.0302602096 857555.1484187461 700907.9632142425 0.7353604781074495 0.9409282429026918 0.9434166943209372 0.8739126909676072 0.8774172512313954 1.12107154217702 1.1226183007222417 1.0876449837497277 1.2234918040967129 1.0 19.418865489668715 2.738841593276352 24.98427392926912 1.114862218133491 0.8817424204620236 0.7189256698180032 0.0739239949843221 13.242513104597215 1177559.2672677955 0.022260546485848555 0.022310666811003133 548.077020127584 -2.738841593276352 -0.2331197976714675 AATVVSEEDHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AATVVSEEDHLK 12 0 H7BY35;Q92736;Q92736-2;A0A590UKB7;A0A590UJZ8 H7BY35 RYR2 Ryanodine receptor 2 0 ; 61.435 0.049082 327840000.0 143180.0 329530.0 329250.0 309100.0 343910.0 277660.0 265710.0 228977.0 123894.0 305180.0 False True 142409.1347887936 340498.2068449084 375605.53810769704 348232.02830726304 387704.8999857283 258466.01774133556 252856.59218922874 246064.42646164625 93361.98379454472 285703.15112225665 0.4984513969461072 1.1917901692977972 1.3146706175003642 1.2188595993407485 1.3570200344756562 0.9046663179109777 0.8850325633301386 0.8612590568045628 0.3267796782353084 1.0 18.12415742279854 2.09788737387514 1.5548873603170956 0.7057693196842371 1.1289235215948883 0.2554609365711795 0.2779992758270516 0.5142525725406774 2.3629853459217793 0.17081482283127322 0.08995085237201389 125.28162384263194 -2.09788737387514 0.42315420191065123 AAVAGEDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVAGEDGR 9 0 B4DY08;G3V4W0;G3V5X6;G3V3K6;G3V251;B4DSU6;P07910;G3V2Q1;G3V576;G3V555;G3V575;P07910-2;G3V4C1;B2R5W2;P07910-4;A0A0G2JNQ3;O60812;B2RXH8;A0A0G2JPF8;P0DMR1;B7ZW38 B4DY08;P07910;P07910-2 HNRNPC;HNRNPCL1;HNRNPCL2;HNRNPCL4;HNRNPCL3 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 3 0 ; 175.86 0.00012469 1786300000.0 1439810.0 1630080.0 1574830.0 1629070.0 2006380.0 1534220.0 1538970.0 1546940.0 1721410.0 1592350.0 False True 1432058.222937929 1684336.2273958325 1796552.3753322535 1835310.0949676908 2261880.600254034 1428162.9825654086 1464524.141663684 1662380.5180021534 1297191.571212226 1490724.859720576 0.9606455635323318 1.1298773320997326 1.2051535624548464 1.2311528066364334 1.5173025293735323 0.958032579421199 0.9824241758054514 1.1151491216922167 0.8701750445453588 1.0 20.50758257600926 AAVEELLER ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVEELLER 9 0 Q15814 Q15814 TBCC Tubulin-specific chaperone C 0 ; 106.68 0.006737300000000001 125136000.0 135387.0 212000.0 190644.0 211000.0 206730.0 177901.0 179856.0 161364.0 149894.0 188055.0 False True 134658.09143490993 219056.29184329367 217485.0180926465 237712.57836568236 233055.84011529043 165603.12260390888 171155.67816335845 173405.80106978913 112954.63217669542 176053.16889801432 0.7648717275456478 1.2442621352086574 1.2353371396491772 1.350231750178758 1.3237810007856043 0.9406426685783825 0.9721817518803485 0.9849626800540081 0.6415938598760969 1.0 17.425651669898606 2.657999368086189 6.986859210181355 0.9170253657317651 1.1987841277602456 0.3703580870855957 0.1791699854069934 0.29052072817196556 21.667102239978938 0.05866737477188667 0.05528370104980394 454.9873981268318 -2.657999368086189 0.2817587620284805 AAVELEEPEDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAVELEEPEDAR 12 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 194.54 3.2446e-06 97821000.0 103430.0 133050.0 118000.0 122910.0 123100.0 133030.0 116220.0 119160.0 134230.0 119710.0 False True 102873.14437215323 137478.4888195766 134613.37432561346 138470.39339775362 138776.05532913608 123833.94921893618 110597.99459648553 128052.32428221949 101150.81508984891 112070.00531111278 0.9179364637894989 1.2267197493024864 1.2011543494793187 1.2355705080351504 1.238297927655895 1.1049696024834301 0.9868652570280436 1.1426101384285552 0.9025681297065029 1.0 16.774040677832026 2.470933632634234 5.947335249157124 1.0328000462225138 1.1736004404012876 0.31902890433154873 0.10450377446840627 0.20222378702323895 27.82700245832971 0.035383095478279454 0.030656446648467502 295.75604679558285 -2.470933632634234 0.14080039417877388 AAVEWFDGK ddPTM_BT-474_Trastuzumab_2h_R1 5 AAVEWFDGK 9 0 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A0A0D9SFL3;C9JGE3;Q01844-2;H7BY36 B0QYK0 EWSR1 RNA-binding protein EWS 0 ;;;; 168.27 0.00013809 1198392000.0 2067430.0 1929910.0 1733390.0 1701370.0 1719340.0 2096950.0 1971290.0 2008660.0 2336830.0 1982360.0 False True 2056299.1865930657 1994145.8876947677 1977436.2451040281 1916763.2675546054 1938287.757673409 1951992.782189346 1875931.1716409044 2158556.4089688067 1760949.5584177286 1855844.0876162197 1.1080128984511437 1.0745223162879987 1.0655185197394412 1.0328255915164914 1.0444238126507093 1.0518086056984597 1.0108236915798707 1.1631130133035112 0.9488671867255938 1.0 20.823644081798733 -0.0906416186151245 0.007970576263126743 2.0555780857923632e-07 2.06346461704685 0.16808784941554478 0.051267509905041066 12205.748210749445 28.31750226236353 3776.068918236801 3554.5483961028476 0.811630542058564 0.0906416186151245 2.0634644114890413 AAVEWFDGKDFQGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVEWFDGKDFQGSK 15 1 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A0A0D9SFL3;C9JGE3;Q01844-2;H7BY36 B0QYK0 EWSR1 RNA-binding protein EWS 0 ; 211.49 1.2329000000000002e-09 5849200000.0 5428900.0 5317600.0 4647000.0 4583600.0 4722500.0 5648000.0 5689400.0 5644000.0 8328500.0 6201600.0 False True 5399671.405607498 5494593.101442923 5301257.20755191 5163883.290032902 5323882.382549512 5257567.053961898 5414181.98638138 6065183.939651288 6276052.771182351 5805808.578543117 0.930046406552809 0.9463958425618143 0.9130954174314481 0.8894339556969518 0.9169924069190484 0.9055701687087326 0.9325457278062704 1.0446751486204282 1.0809954696710367 1.0 22.46906557543633 1.7557761466406268 4.025870297519305 1.0486665970727862 0.9170918459773736 0.8542897387168782 0.023242862213503468 0.06608363605852356 2.2480725922003306 0.012178157597456515 0.006173440567757685 56.98704617328416 -1.7557761466406268 -0.1315747510954126 AAVFEEIDTYER ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVFEEIDTYER 12 0 Q96F86;H3BPW9;H3BSQ0 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 ; 145.89 0.00014166 105054000.0 90091.0 105902.0 96593.0 105412.0 110404.0 118052.0 100485.0 103090.0 115491.0 113595.0 False True 89605.96006605106 109426.88405088922 110192.45479859316 118757.14839186428 124463.29498422373 109891.34310451672 95624.1566600228 110783.09928041295 87029.79055011357 106345.26984642753 0.84259469363753 1.028977444966869 1.0361763617481183 1.116713028829215 1.170369826170551 1.0333449081770167 0.8991858010996914 1.0417303885766998 0.8183701134596084 1.0 16.698396339227017 2.363721335856195 7.379607297138754 0.9526564782338184 1.0482925192659083 0.19080927918081958 0.09670193569888964 0.4069562752390901 24.824306970118172 0.034401464046655825 0.028701817069824304 231.05817345009385 -2.363721335856195 0.09563604103208989 AAVGQES(ph)PGGLEAGNAK ddPTM_BT-474_Trastuzumab_2h_R1 6 AAVGQESPGGLEAGNAK 17 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK 384.24 1.0934999999999993e-121 5426560000.0 6320080.0 5519610.0 4933130.0 4869630.0 4873790.0 6693960.0 6476820.0 5910030.0 8340440.0 6583010.0 True False 6286053.391506905 5703326.882175289 5627671.824465375 5486124.658705591 5494438.267283432 6231222.3010869 6163511.472744866 6351066.44912426 6285050.318170152 6162876.665801595 1.0199868880045628 0.9254325847251832 0.9131566522649847 0.8901889419836411 0.8915379238031174 1.0110898917813107 1.0001030049727904 1.030536029443352 1.0198241274316766 1.0 22.555172488871904 2.722067325624762 23.05188615400595 1.0145085664982507 0.9249826247317448 0.5914180227604626 0.03494260475586566 204.09350440026543 285250.7627148626 0.011703898404967408 0.01107345747215245 527.311600502615 -2.722067325624762 -0.08952594176650597 AAVGRPLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAVGRPLDK 9 1 Q8WUM4;Q8WUM4-2;A0A3B3IT07;Q8WUM4-3;C9IZF9;F8WEQ7;F8WBR8 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 79.148 0.025319 204570000.0 160460.0 165060.0 146140.0 132490.0 148420.0 175140.0 157890.0 149470.0 194730.0 157690.0 False True 159596.10118878182 170553.922319123 166715.24172834866 149263.22041549426 167320.4072457381 163032.98403521403 150252.2575016272 160624.21039328096 146741.4007483147 147626.0891947989 1.0810833102690134 1.155310170779298 1.1293074458428605 1.0110897147626468 1.1334067586451588 1.104364309347009 1.0177893238326117 1.088047588806139 0.9940072350943552 1.0 17.17158817839549 1.7135673836041991 0.48054996644969905 0.9933500840885292 1.1156826465521763 0.42354959211560117 0.0438101156193648 0.8841274522897222 0.5011106058379795 0.04502268404248539 0.03162458842200893 51.709148184034156 -1.7135673836041991 0.1223325624636471 AAVGRPLDKHEGALETLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVGRPLDKHEGALETLLR 19 2 Q8WUM4;Q8WUM4-2;A0A3B3IT07;Q8WUM4-3;C9IZF9;F8WEQ7;F8WBR8 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ; 210.98 9.059899999999999e-17 1578900000.0 566500.0 785640.0 678040.0 672450.0 729920.0 795440.0 823860.0 650310.0 1035850.0 836430.0 False True 563450.0269440666 811789.552470592 773502.1383706691 757582.1010521488 822870.9854252058 740453.1050643511 784006.7443491697 698839.434407269 780578.6471788727 783048.3212962494 0.7195597150522433 1.0367042880913973 0.9878089478440134 0.967478098667086 1.0508559472588286 0.9456033362521145 1.001223964124377 0.8924601654855961 0.9968460769914066 1.0 19.57874181227683 4.746244908773661 24.98348763207879 0.9800492701618724 0.7195595887616101 0.7758218603113648 0.04292846926199989 452.68499110063937 1471753.2446488617 0.010547033453056243 0.1135005437399516 55750.004756520524 -4.746244908773661 -0.2604896814002623 AAVLQELATHLHPAEPEEGDSNVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AAVLQELATHLHPAEPEEGDSNVAR 25 0 Q96KN1 Q96KN1 FAM84B Protein FAM84B 0 55.20399999999999 0.061827 470770000.0 121360.0 153370.0 165320.0 171410.0 171970.0 213790.0 211790.0 185940.0 249570.0 218130.0 False True 120706.61124436362 158474.827735877 188595.6190128002 193110.48842493678 193869.3601539522 199011.20050752745 201544.9085836314 199815.78698418874 188066.81756666614 204208.7566495116 0.5910941980393881 0.7760432526792725 0.9235432510687648 0.9456523392695493 0.9493684959195694 0.9745478292544288 0.9869552701383308 0.9784878487220672 0.9209537370106501 1.0 17.63968520600003 4.681275104379262 1.2540614169296445 0.9693087036410032 0.43979283815954684 0.9695863932376922 0.021026288388862058 0.18796347564789642 0.2750232861583935 0.005851437302583491 0.12534532799324527 48003.74326552581 -4.681275104379262 -0.5295158654814563 AAVLS(ph)DS(ph)EDEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVLSDSEDEEK 12 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 AAVLS(1)DS(1)EDEEK;AAVLS(1)DS(1)EDEEK 237.21 6.216199999999999e-16 1156810000.0 2562800.0 1802410.0 1599320.0 1349800.0 1436040.0 1983450.0 1747980.0 1903790.0 2593000.0 1748310.0 True False 2549002.1695538494 1862402.1272701477 1824490.3544613575 1520684.5416018895 1618911.1819240663 1846338.7700390841 1663423.5294679466 2045860.4770497396 1953989.8944198661 1636731.3589965033 1.5573735760257374 1.1378789298764371 1.1147158294687842 0.929098433437627 0.9891123384576912 1.1280646392521576 1.0163082171822067 1.2499671774505974 1.1938366572373107 1.0 20.642386117252318 4.756452668806225 3.1474220669240056 1.0862439571910953 1.6388133707976964 0.6999017458607305 0.09351793409474567 0.23557907566560962 3.4852899887732867 0.025037338491376845 0.32833180867051504 57075.88691397736 -4.756452668806225 0.5525694136066011 AAVLS(ph)DS(ph)EDEEKASAK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAVLSDSEDEEKASAK 16 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 AAVLS(1)DS(1)EDEEKASAK;AAVLS(1)DS(1)EDEEKASAK;AAVLS(1)DS(1)EDEEKASAK 159.75 5.1342e-09 701670000.0 4057100.0 2578470.0 2287960.0 1992160.0 2249890.0 3505500.0 3333530.0 3316780.0 5628700.0 3380450.0 True False 4035257.0243861806 2664292.815231968 2610084.880695173 2244367.251739234 2536400.1553571904 3263173.036059392 3172274.4185787514 3564294.965867577 4241582.305715811 3164706.7868511477 1.2750808514558223 0.8418766712611987 0.8247477749090879 0.7091864753677094 0.8014645040404782 1.0311138616750708 1.0023912584126422 1.1262638866503067 1.3402765536886103 1.0 21.593640408076798 2.072548871700841 1.5696527976557566 1.1715608666802622 0.8817701883164921 0.3061908188606506 0.1640413625314372 0.4469305246154532 2.080864383681742 0.10344938373796482 0.05337073686323985 118.18132959895054 -2.072548871700841 -0.28979067836377004 AAVMHDILDMMPEGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAVMHDILDMMPEGIK 16 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 130.98 4.701600000000001e-05 258460000.0 240520.0 229430.0 212890.0 213810.0 235120.0 264180.0 260550.0 242340.0 281040.0 295600.0 False True 239225.06704428417 237066.4388566365 242863.0615269478 240878.32407756697 265061.1383345771 245917.85841282882 247946.2011023429 260424.6413775856 211781.45774306188 276734.5549241077 0.8644567972723529 0.8566564407601723 0.8776029491277341 0.8704309591681675 0.9578172787538877 0.8886416749808129 0.8959712355775021 0.941062967178078 0.7652873628345449 1.0 18.0781432741674 3.4374652353426383 24.999430302032067 0.9066602606371539 0.8667364440711225 0.10770827516703374 0.05758732392857199 354.0356010807064 223185.66332622175 0.015040718532842447 0.020365261150466298 2738.2004364296085 -3.4374652353426383 -0.03992381656603139 AAVPSGAS(ph)TGIYEALELR ddPTM_BT-474_Trastuzumab_2h_R1 3 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;P13929-3;P13929-2;P13929;E5RGZ4;P09104-2;F5H0C8;P09104;E5RI09;E5RG95;K7EPM1;K7EKN2;F5H1C3 P06733 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Beta-enolase;Gamma-enolase 1 AAVPS(0.012)GAS(0.96)T(0.028)GIYEALELR;AAVPSGAS(0.927)T(0.073)GIYEALELR;AAVPSGAS(0.988)T(0.011)GIYEALELR 271.31 6.2192e-39 99547600.0 36578.0 31076.800000000003 29201.7 31909.4 26581.100000000002 35306.3 36675.0 30553.1 41811.0 36960.0 True False 36381.06811219784 32111.172501677695 33313.04553427348 35949.12676825549 29966.045526476813 32865.6585830905 34900.89013789456 32833.12746749816 31507.23928869611 34601.181156952014 1.051440063481423 0.9280368885680647 0.9627719176164676 1.0389566357630728 0.8660411154911133 0.9498421003031912 1.0086618135832721 0.9489019267453932 0.9105827672696579 1.0 15.078533666549943 4.750111803400442 24.036366286320927 0.9571836713151881 1.0514401597675203 0.2612828078412669 0.04759402850642469 1409.0162248203685 2931865.839902867 0.01097273883135439 0.16933977152537574 56248.6111201736 -4.750111803400442 0.09425648845233214 AAVPSGASTGIYEALELR ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;P13929-3;P13929-2;P13929;E5RGZ4;P09104-2;F5H0C8;P09104;E5RI09;E5RG95;K7EPM1;K7EKN2;F5H1C3 P06733 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Beta-enolase;Gamma-enolase 0 ; 209.21 1.2734999999999999e-15 249340000.0 36782.0 43365.0 43842.0 33741.0 26090.0 39426.0 32216.0 36640.0 34132.0 35164.0 False True 36583.96979886436 44808.37781030392 50014.572518504676 38012.607140457345 29412.40685245459 36700.57341882119 30657.589002928722 39374.26285415012 25720.625945367854 32919.803414584974 1.1113058403822664 1.361137466284254 1.519285273020371 1.1547033456346834 0.8934563333213452 1.1148478913018407 0.9312810473633026 1.1960661598819124 0.7813116506635165 1.0 15.006668100070526 3.488615243276679 8.64184265840477 1.0123355822208322 1.3345380445361361 0.5370322203535951 0.14253876498080661 0.13208091714935266 75.92615027372197 0.03747682100056998 0.054594257543653345 3080.45765544863 -3.488615243276679 0.3222024623153039 AAVS(ph)PQKR ddPTM_BT-474_Trastuzumab_2h_R1 4 AAVSPQKR 8 1 E9PJF5;G5E9I4;Q9HCU9 E9PJF5 BRMS1 Breast cancer metastasis-suppressor 1 1 AAVS(1)PQKR;AAVS(1)PQKR;AAVS(1)PQKR;AAVS(1)PQKR 110.39 0.0021043000000000004 1334810000.0 1493920.0 1439450.0 1350140.0 1286910.0 1246970.0 1395450.0 1599200.0 1457370.0 2040760.0 1688940.0 True False 1485876.9007101143 1487361.2230840996 1540227.9763727458 1449832.6740501437 1405764.238129754 1298985.8260359662 1521840.5864627403 1566126.349774909 1537842.042782987 1581150.403225717 0.9397441873200459 0.9406829483455355 0.9741185741916234 0.916947983627825 0.8890768615445083 0.8215447584150726 0.9624894528427035 0.9904980238311566 0.9726095883387335 1.0 20.592543176531784 2.013803956113629 24.999343061469784 0.9841085288924766 0.9146336023715134 0.43930419567462964 0.03820627977115492 241.82398647373694 437948.03195017984 0.015733843559920344 0.011615097787078024 103.22953144857667 -2.013803956113629 -0.06947492652096321 AAVTPGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AAVTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 67.563 0.094237 688710000.0 912200.0 851670.0 805830.0 673990.0 703550.0 771760.0 888740.0 783670.0 1222400.0 823390.0 False True 907288.8165549474 880017.321104614 919283.8596000785 759317.0648942483 793142.9222324424 718410.0477276279 845748.2508835022 842151.4347956274 921155.8993208031 770840.5452603552 1.1770123174417428 1.1416334111062927 1.1925733087763124 0.9850507599308819 1.0289325426759361 0.9319826936256724 1.0971766548655617 1.0925105587319444 1.195001878124714 1.0 19.55607293204301 3.751514587578112 24.716153041673966 1.0511508405779586 1.1675290607570927 0.39999878407601575 0.06898564341167467 765.4781869816206 1460525.5449860056 0.018750823940149673 0.033530284175028006 5643.058955764489 -3.751514587578112 0.11637822017913413 AAVVESHK ddPTM_BT-474_Trastuzumab_2h_R1 2 AAVVESHK 8 0 P00390-5;P00390-4;P00390-2;P00390-3;P00390;A0A2R8YF59;H0YC68 P00390-5 GSR Glutathione reductase, mitochondrial 0 ; 121.62 0.0014255 706600000.0 522100.0 742810.0 896380.0 633920.0 431240.0 552690.0 896290.0 533570.0 1433430.0 696080.0 False True 519289.07161076344 767533.9818118721 1022582.5125253692 714174.2070027175 486155.85784026457 514483.8411923164 852933.0285396997 573387.702813561 1080180.383477929 651655.5784559296 0.7968765844699695 1.1778215474353975 1.569207026430028 1.0959381467966915 0.7460319130424546 0.789502703884411 1.3088709077894929 0.8798937993781606 1.6575940100710422 1.0 19.313750128243974 -0.24198992955721277 7.209240354412309 0.9997664565572771 1.1001898723024843 0.010494450311900105 0.30704278758971293 0.0 0.0 0.2910485744293141 0.06860080692950082 0.5728093131636547 0.24198992955721277 0.10042341574520719 AAVVT(ph)SPPPTTAPHK ddPTM_BT-474_Trastuzumab_2h_R1 4 AAVVTSPPPTTAPHK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK 135.09 0.00011459 5494500000.0 2567630.0 2604940.0 2454540.0 2346490.0 2346210.0 2785690.0 2484160.0 2314200.0 3156920.0 2819590.0 True False 2553806.165370512 2691643.853180516 2800117.8967558574 2643555.393408957 2644985.936423819 2593121.8071089126 2363991.690387244 2486897.355269489 2378939.3665607246 2639641.3522275537 0.9674822540628079 1.0197005933813994 1.0607948289614724 1.0014827927961123 1.0020247387743624 0.9823765660136428 0.8955730627542665 0.9421345642925444 0.9012358305999311 1.0 21.331910493410934 2.447659350516316 4.215313190152161 0.9300395988003343 1.0118991129052264 0.5150728983105028 0.034330558252000994 0.15139062024044087 6.148788280208104 0.011757615750937275 0.010007644895795602 280.32339903469284 -2.447659350516316 0.08185951410489212 AAYEAELGDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 AAYEAELGDAR 11 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;; 209.73 3.5293000000000004e-08 7349410000.0 4285420.0 5292810.0 4742960.0 4958070.0 4680720.0 5145250.0 4952630.0 4462170.0 5271100.0 4778170.0 False True 4262347.774874925 5468977.981278788 5410727.541452637 5585761.153637631 5276781.947198976 4789570.978115698 4713052.366016106 4795159.783840147 3972108.0341213117 4473223.099802857 0.95285830368326 1.2226034470580767 1.2095814183046443 1.248710611792156 1.1796375520441922 1.070720344426099 1.0536144209359506 1.0719697356591666 0.8879744974705978 1.0 22.09288328316694 1.9914579758792021 1.0663912396779238 0.9670037653967646 1.1697395896723406 0.43631029268956545 0.08718564101574097 0.4808701111915461 1.0070885131047544 0.0686352373923566 0.031899159762450974 98.0523430250281 -1.9914579758792021 0.20273582427557602 AAYEAELGDARK ddPTM_BT-474_Trastuzumab_2h_R1 3 AAYEAELGDARK 12 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;; 131.13 0.00032737 3155550000.0 1001013.0 1228300.0 1149800.0 1220150.0 1130670.0 1270240.0 1456818.0 1165679.0 1731065.0 1370707.0 False True 995623.6572310005 1269183.2229769693 1311681.8457592402 1374620.8648952008 1274654.1224938608 1182431.2986233288 1386346.1477547982 1252667.886178024 1304467.2258325978 1283227.305738696 0.775874743919874 0.9890556546771407 1.0221742008553694 1.0712216446359781 0.9933190454984123 0.9214511671746702 1.0803589835993566 0.9761854977493016 1.0165519545905197 1.0 20.29134531560205 4.737928280326654 4.074306751865468 1.009584555863611 0.7559078730030006 0.7277022119008293 0.0427332333867354 0.11358904764967893 4.0761782871135965 0.010066627456947379 0.08479774093240228 54692.56357804485 -4.737928280326654 -0.2536766828606104 ACAELHQNVNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ACAELHQNVNVK 12 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ; 142.08 5.9634e-05 952610000.0 1046920.0 997550.0 953210.0 895080.0 919130.0 1136010.0 1091800.0 998860.0 1396680.0 1119150.0 False True 1041283.499043748 1030752.8487182911 1087413.682550153 1008397.0362253808 1036175.757389672 1057480.3025798965 1038985.4629189705 1073400.0053083077 1052486.928553157 1047724.8888474785 0.9938520217737538 0.9838010528242227 1.0378809305048895 0.9624635693580218 0.9889769427253838 1.0093110451381462 0.9916586634320373 1.0245055899064042 1.0045451241603287 1.0 19.998828513680465 1.7587945833762508 24.99999999999305 1.0119737798961166 0.9956256057589634 0.10172107953249176 0.019055272587547842 18.66018916031646 23076.154002671843 0.00855192864548339 0.004743095028617249 57.38449754993935 -1.7587945833762508 -0.01634817413715317 ACDEGHCTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ACDEGHCTAK 10 0 A0A0A0MT83;P26440;A0A0S2Z4K7;P26440-2;H0YLC3 A0A0A0MT83 IVD Isovaleryl-CoA dehydrogenase, mitochondrial 0 65.5 0.068781 53700000.0 126380.0 122470.0 147020.0 105110.0 154060.0 175120.0 127530.0 116240.0 186400.0 164600.0 False True 125699.58412213811 126546.3399153215 167719.1380792517 118416.91522282883 173678.6278148392 163014.36658813883 121360.88668808981 124914.41905475999 140464.2176320333 154095.08707885008 0.8157273960189136 0.8212224173673237 1.0884132729905283 0.768466519391596 1.1270873790153235 1.0578816604628334 0.7875714209239504 0.8106320676585983 0.9115424787044516 1.0 17.233461340442872 -0.550916091467367 5.631981940542075 1.000000000630595 0.9065733996388893 0.04252007971572391 0.12751021261842518 9.298621650211197e-10 3.3020780051005266e-10 0.12480398528257142 0.029416580999129572 0.28124441605049005 0.550916091467367 -0.09342660099170563 ACDHCLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ACDHCLR 7 0 C9IYN9;Q6GMV2 C9IYN9 SMYD5 SET and MYND domain-containing protein 5 0 ; 105.2 0.0079801 79241000.0 84139.0 94795.0 97444.0 97805.0 101486.0 71305.0 99027.0 83995.0 98902.0 97817.0 False True 83686.00497272161 97950.19427021238 111163.26820156841 110187.1029718274 114409.6405453509 66375.8531839153 94236.68569012372 90263.1334179677 74528.92731890218 91574.23531465312 0.9138597192231286 1.0696261228242985 1.2139142393011146 1.2032544153191085 1.2493649567723315 0.7248310942029156 1.0290742299547717 0.9856826334156064 0.8138634962423381 1.0 16.482654128392223 2.7540156043842683 24.919228065259674 0.9260095581548731 1.135380724902472 0.44244516668049116 0.12242112850317333 799.3264176289459 1288812.4360773924 0.038446640864631315 0.04064512191859475 567.5649978924178 -2.7540156043842683 0.20937116674759904 ACEVALEEIKAETEKQS(ph)PPHGEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ACEVALEEIKAETEKQSPPHGEAK 24 2 Q9Y6D6;E5RJN9 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 ACEVALEEIKAET(0.325)EKQS(0.675)PPHGEAK 107.3 0.0012035 246740000.0 116010.0 59142.0 65103.0 62183.0 60870.0 107990.0 117310.0 89727.0 202800.0 106430.0 True False 115385.41504992283 61110.505717906 74268.93651457985 70055.36142423342 68621.43369524367 100524.90548111654 111635.26713228102 96422.88436447401 152822.65738077476 99637.54628069275 1.1580515514188412 0.6133280876442827 0.7453910627762147 0.7031020337140557 0.6887105941160735 1.008905871667333 1.1204136522771149 0.967736440365938 1.5337858376224178 1.0 16.60440187310467 2.5451089009785157 3.4039822440995233 1.1294287525257882 0.7667068984070629 0.4379411033574636 0.1988777325343669 0.23537382817965946 5.340203341608057 0.06721554370377168 0.06072415635402585 350.83983733531994 -2.5451089009785157 -0.3627218541187254 ACFCDDHTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ACFCDDHTR 9 0 Q9Y3S2;D6RBR7 Q9Y3S2 ZNF330 Zinc finger protein 330 0 74.267 0.041575 166190000.0 332500.0 227560.0 200260.0 197360.0 199350.0 170280.0 250450.0 247010.0 485310.0 271190.0 False True 330709.8569442226 235134.19703707492 228454.86730887604 222345.75576422314 224736.04085997748 158508.94439600443 238334.77668808977 265443.14049136493 365711.853320827 253882.42202255985 1.302610296174171 0.9261539068513417 0.899845154654211 0.8757823956180221 0.8851973250830558 0.6243399725480774 0.9387604497758867 1.0455357183719391 1.4404772508761163 1.0 17.953800985457004 1.5157437751388334 3.931951565044581 1.2284433095081846 0.9087544572607984 0.28665509042362636 0.18431888487767342 0.21294347143561945 7.10977206428213 0.1179148511927433 0.0472255446885755 32.790178069091525 -1.5157437751388334 -0.3196888522473862 ACFHCETCK ddPTM_BT-474_Trastuzumab_2h_R1 4 ACFHCETCK 9 0 Q14847;Q14847-2;F6S2S5;K7ESD6 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;; 169.09 5.8733e-05 2882520000.0 4827520.0 6165200.0 7847300.0 3739690.0 1708500.0 2636460.0 4019960.0 2190460.0 10442400.0 3241510.0 False True 4801529.1687078895 6370404.9550579 8952131.63004565 4213134.370560949 1926067.3479271242 2454207.7257592776 3825499.1770615047 2353923.248130504 7869010.440991138 3034634.0566036673 1.5822432224601453 2.0992333296976162 2.9499872021026445 1.3883500586809625 0.6346950940380468 0.8087326774767706 1.260613011554667 0.7756860314040606 2.593067333396389 1.0 21.53309112318437 3.5199579497158253 11.19847798423579 1.119999287892942 2.194999868751644 0.3703892186347446 0.6008092083352283 0.980454604786334 254.34786689218936 0.15668228917553353 0.24165079879247603 3310.9906147662614 -3.5199579497158253 1.0750005808587022 ACGNFGIPCELR ddPTM_BT-474_Trastuzumab_2h_R1 4 ACGNFGIPCELR 12 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;;; 162.38 0.00014618 409630000.0 719590.0 783980.0 769523.0 732560.0 682713.0 746610.0 758870.0 716140.0 954100.0 820390.0 False True 715715.8073939644 810074.3003740816 877865.1495861787 825302.0208889307 769652.4537930174 694998.6080308956 722160.5589350801 769582.003285236 718974.8392849951 768032.0078287837 0.9318827862621032 1.0547402870150566 1.1430059432912072 1.0745672217777076 1.0021098677499323 0.9049083904662352 0.940274040110149 1.0020181391408856 0.936126140520533 1.0 19.550806911130138 3.035412599469389 4.954255102618139 0.9584989082292109 1.0568823117043542 0.38929931614834024 0.055443142522697574 0.19931866221519035 11.952779268131758 0.017128222820305534 0.020227483834951054 1084.9571831100618 -3.035412599469389 0.0983834034751433 ACLISLGYDVENDR ddPTM_BT-474_Trastuzumab_2h_R1 3 ACLISLGYDVENDR 14 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 ;; 231.92 8.400100000000001e-13 1523550000.0 1130460.0 1109480.0 1017970.0 941410.0 926370.0 1051420.0 1011190.0 985990.0 1023150.0 1010010.0 False True 1124373.7289659127 1146408.3711051773 1161291.327646142 1060592.4094750588 1044337.7284748323 978737.810176456 962274.8765790765 1059569.5805557717 771008.3920075916 945550.2970869358 1.1891210149580604 1.2124245263705673 1.228164520939673 1.1216668354317547 1.104476125376135 1.0350986226663612 1.017687667746143 1.120585106704644 0.8154070644183865 1.0 19.85079467658637 2.9501652103539517 0.5531485653352965 0.9698618787500122 1.2377163025029547 0.6390723292861926 0.07044373215403213 0.6719678830578579 0.4353731681299437 0.05719826315510218 0.08447071915107912 891.5900441993904 -2.9501652103539517 0.26785442375294255 ACLISLGYDVENDRQGEAEFNR ddPTM_BT-474_Trastuzumab_2h_R1 5 ACLISLGYDVENDRQGEAEFNR 22 1 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 ;;;; 340.2 2.9947999999999998e-81 2463832000.0 867176.0 1001249.0 932573.0 1097254.0 927952.0 937405.0 1009516.0 836444.0 967222.0 1095782.0 False True 862507.2207683112 1034574.9676971984 1063871.1723301732 1236166.2438960136 1046121.1867975821 872604.3987640147 960681.8543543771 898863.6986565705 728863.0982107862 1025848.2546138304 0.8407746632010334 1.008506826466896 1.0370648558842226 1.2050186158978797 1.0197621159782382 0.8506174230344598 0.9364755947418515 0.876215068470276 0.7104979658859575 1.0 19.968385909911436 2.764618286206999 7.98746873800715 0.8731272366838055 1.0327215515711008 0.3199757791130371 0.1069414048460629 0.2961440475297266 79.80085755532261 0.033539686020729396 0.035035581251572245 581.5918154448705 -2.764618286206999 0.15959431488729525 ACNQLGQFLQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ACNQLGQFLQHR 12 0 O95782-2;O95782;O94973-3;O94973;O94973-2;A0A0G2JQM1;A0A0G2JS82 O95782-2;O94973-3 AP2A1;AP2A2 AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2 0 ; 134.13 0.00015092 1558160000.0 444300.0 568650.0 476310.0 472390.0 496680.0 498700.0 571850.0 437280.0 662730.0 559970.0 False True 441907.93816637056 587577.1714938154 543370.307839262 532194.5255647628 559929.2539469964 464226.0428135271 544187.4308208595 469912.0540628486 499409.0716270261 524232.2351855637 0.842962161626607 1.1208337298942126 1.0365068596877183 1.0151884791601582 1.0680939025979526 0.885535096194922 1.0380655638778722 0.8963814556281774 0.9526485364835474 1.0 18.999846542548976 2.7488491502608468 24.837768134231048 0.9508857728494766 1.023515801518105 0.1321385909638153 0.07845558146177886 1106.7216341431285 2671757.3715600176 0.022579723899648553 0.023710803712233393 560.8531330227072 -2.7488491502608468 0.07263002866862833 ACPDSLGS(ph)PAPSHAYHGGVL ddPTM_BT-474_Trastuzumab_2h_R1 1 ACPDSLGSPAPSHAYHGGVL 20 0 E9PNA7;Q5XXA6-2;Q5XXA6 E9PNA7 ANO1 Anoctamin;Anoctamin-1 1 ACPDSLGS(1)PAPSHAYHGGVL 188.19 1.7015999999999993e-17 358060000.0 296820.0 338520.0 369000.0 345740.0 359010.0 375070.0 310510.0 168140.0 338580.0 295530.0 True False 295221.95409980253 349787.43356033845 420951.9925945033 389510.64855047944 404727.79548101657 349142.29371981084 295489.44503660884 180687.46059761997 255141.4957395598 276669.02238403744 1.0670582183574286 1.264281163630987 1.521500271216451 1.4078578266337651 1.4628590942112194 1.261949352736625 1.0680250448365962 0.6530816462235233 0.9221903252522582 1.0 18.07780159415341 2.1061572892280935 2.903041713805803 0.8252594104735133 1.3503232119116684 0.6784929226951324 0.14580603798743663 0.13908020575596844 2.325234160749505 0.06708685343515024 0.04359335843875465 127.69011827173833 -2.1061572892280935 0.5250638014381551 ACPRPEGLNFQDLK ddPTM_BT-474_Trastuzumab_2h_R1 3 ACPRPEGLNFQDLK 14 1 Q5TEJ0;P15927;P15927-2;P15927-3 Q5TEJ0 RPA2 Replication protein A 32 kDa subunit 0 ;; 174.62 2.2921e-06 2800180000.0 2333680.0 2355940.0 2178820.0 2001510.0 2145320.0 2667020.0 2539970.0 2409520.0 3259790.0 2622180.0 False True 2321115.7261762233 2434356.038704197 2485578.9173570606 2254900.9607805572 2418513.785692138 2482655.1848897794 2417101.947472337 2589330.6176946447 2456458.4334481037 2454830.227438756 0.9455300412354611 0.9916596314866464 1.0125257908162497 0.9185567847326067 0.9852061289857472 1.01133477873134 0.9846310023623172 1.0547900986196588 1.0006632662377823 1.0 21.227191822580437 2.802644176215656 3.5874450611899507 1.015337767180856 0.9702087261962387 0.3163647011551177 0.029241845497453952 0.2829165617510487 7.254593846490188 0.009510961232388782 0.009932681335945917 634.810609163652 -2.802644176215656 -0.04512904098461745 ACQSIYPLHDVFVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ACQSIYPLHDVFVR 14 0 P61247;D6RG13;D6RAT0;H0Y9Y4;D6RB09;D6R9B6 P61247 RPS3A 40S ribosomal protein S3a 0 ;;; 160.81 4.6962e-06 11022820000.0 5000820.0 6334010.0 6424060.0 6667840.0 5754000.0 6021450.0 6259470.0 5560720.0 6757420.0 6096640.0 False True 4973896.140763338 6544833.693860106 7328511.809069497 7511987.860330961 6486737.793370012 5605201.3344686385 5956675.5226025 5975689.163164017 5092144.385788921 5707547.215603895 0.871459482133617 1.1466981255918742 1.2840037116178449 1.3161499286057408 1.1365193398025486 0.9820683251019892 1.0436489261652557 1.046980241674926 0.8921773563024551 1.0 22.444439458497907 2.816156169846961 5.030351039614698 1.0044118458464344 1.1696965572948803 0.3010495501654912 0.1186905595834971 0.29301326471581285 13.394408149546521 0.0386193655109408 0.04087514055856681 654.8716198743158 -2.816156169846961 0.16528471144844592 ACRPPGS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ACRPPGSPGR 10 1 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 ACRPPGS(1)PGR;ACRPPGS(1)PGR 93.766 0.0051853 1075880000.0 788300.0 829440.0 733220.0 758680.0 743410.0 689340.0 747120.0 639120.0 679210.0 741620.0 True False 784055.8803883641 857047.4089929312 836451.0027375118 854728.8102107861 838078.8569637117 641687.5483318162 710978.9513244379 686814.379785601 511827.7964477112 694289.1766671741 1.12929296140277 1.2344242684396327 1.2047588106626739 1.2310847395227695 1.2071034449748697 0.9242367156177435 1.024038650202471 0.9892338853423372 0.73719685348497 1.0 19.405177155755393 2.741305460406043 24.46976270211685 0.9462922707971155 1.2050144857251297 0.7394438152234545 0.07890698273398526 94.83100203862837 845401.7703727427 0.024457099844526584 0.024891526067328452 551.1952424891382 -2.741305460406043 0.25872221492801417 ACRPPGS(ph)PGRAPPPTPAPSGCDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ACRPPGSPGRAPPPTPAPSGCDPR 24 2 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 ACRPPGS(1)PGRAPPPTPAPSGCDPR;ACRPPGS(1)PGRAPPPTPAPSGCDPR 109.62 0.0011035 1205490000.0 380750.0 474700.0 469850.0 548330.0 526590.0 428720.0 470430.0 377780.0 492020.0 489320.0 True False 378700.0843053023 490500.10253779084 536000.7959905886 617748.521778458 593648.1151565365 399083.5954983259 447673.5036828831 405971.8619279696 370768.26373022055 458091.17867207184 0.8266915014672171 1.0707477580329465 1.1700744763179318 1.3485274341435816 1.2959169326888613 0.8711881260302832 0.9772585121167628 0.8862250155194273 0.8093765629912685 1.0 18.805275256003515 2.721553573129244 24.52032083351136 0.9063108122072984 1.1514013353782695 0.4084943048092097 0.14031328435881282 668.4832582815018 963800.609709225 0.048601784781571136 0.0459393134102355 526.6881813968668 -2.721553573129244 0.24509052317097113 ACRT(ph)PESFLGPSASSLVNLDSLVK ddPTM_BT-474_Trastuzumab_2h_R1 3 ACRTPESFLGPSASSLVNLDSLVK 24 1 Q9H201 Q9H201 EPN3 Epsin-3 1 ACRT(0.817)PES(0.183)FLGPSASSLVNLDSLVK;ACRT(0.994)PES(0.006)FLGPSASSLVNLDSLVK;ACRT(0.842)PES(0.158)FLGPSASSLVNLDSLVK 294.1 1.0906999999999999e-61 7421990000.0 3656389.0 3502450.0 3210385.0 3326477.0 3041510.0 3886874.0 3660447.0 3630523.0 4698890.0 4006180.0 True False 3636703.407887009 3619026.9309742656 3662379.3028333425 3747608.6471286244 3428828.2700578403 3618183.5490972237 3483377.1943445285 3901451.0616822485 3540911.5214001397 3750502.1625367478 0.9696577285606021 0.9649446325146083 0.9765037171332275 0.9992284992028464 0.9142317805620634 0.9647197607933048 0.9287762127267932 1.0402476502088998 0.9441166457040926 1.0 21.838652343305785 1.7488759040045938 24.999999999999996 0.99778415301921 0.9605311777945236 0.20797478417480897 0.03116599925420481 3.8186802054006748 9273.315244148887 0.01384948824171216 0.00768035614153451 56.08876841943379 -1.7488759040045938 -0.0372529752246864 ACRTPES(ph)FLGPSASSLVNLDSLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ACRTPESFLGPSASSLVNLDSLVK 24 1 Q9H201 Q9H201 EPN3 Epsin-3 1 ACRT(0.275)PES(0.725)FLGPSASSLVNLDSLVK 192.1 4.7899e-18 5787600000.0 330300.0 295990.0 286460.0 282600.0 282200.0 376270.0 341640.0 321240.0 470980.0 373730.0 True False 328521.70149977965 305841.8482202663 326791.07804504415 318377.1310243691 318136.4972695549 350259.34054430726 325113.56800846074 345212.5600236675 354913.2898086648 349878.2314336491 0.9389601066452187 0.8741379735660009 0.9340137473143048 0.9099655320646782 0.9092777677707173 1.0010892621387062 0.9292191934213412 0.986664870829878 1.014390887807979 1.0 18.416493380856 2.294383529946006 0.6810376890022841 1.0063155547969191 0.9064750381231621 0.6156946619279271 0.028017174335131456 0.4664928439631492 0.42465863461195535 0.02262497465264704 0.015641536908221555 196.9624918017448 -2.294383529946006 -0.09984051667375704 ACSPSNIPAVIITDMGTQEDGALEETQGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ACSPSNIPAVIITDMGTQEDGALEETQGSPR 31 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 ACSPSNIPAVIITDMGTQEDGALEET(0.001)QGS(0.999)PR;ACSPSNIPAVIITDMGTQEDGALEET(0.001)QGS(0.999)PR;ACSPSNIPAVIITDMGTQEDGALEET(0.082)QGS(0.918)PR;ACSPSNIPAVIITDMGTQEDGALEET(0.124)QGS(0.876)PR 182.69 1.837e-18 140461000.0 131039.0 152492.0 136128.0 150790.0 153192.0 141900.0 127796.0 125122.0 146152.0 136524.0 True False 130333.50058380155 157567.6040366395 155293.6391542127 169879.99853915285 172700.09315987834 132090.78699667047 121614.0192518712 134459.2389966422 110134.7979364644 127810.92143592308 1.0197368043320394 1.232817996039835 1.215026364019039 1.329150878740208 1.3512154612425673 1.0334859142917068 0.9515150809145942 1.0520168189543349 0.8617009931477534 1.0 16.963651594197767 2.5850201595867133 5.600110596629853 0.980211618304376 1.2336109830343973 0.6384610054178075 0.0947425453920983 0.15377185264060894 6.728447304032941 0.03179393132106185 0.02978306515452568 384.60963488865235 -2.5850201595867133 0.25339936473002134 ACTGLSGPGSGSKS(ph)PPATR ddPTM_BT-474_Trastuzumab_2h_R1 2 ACTGLSGPGSGSKSPPATR 19 1 I3L2J0;I3L2I4 I3L2J0 CIC 1 ACTGLSGPGSGS(0.005)KS(0.994)PPATR;ACTGLSGPGS(0.001)GS(0.008)KS(0.984)PPAT(0.007)R 220.13 1.7989e-19 701430000.0 504480.0 600230.0 612750.0 694180.0 622780.0 658530.0 721040.0 586820.0 983550.0 745280.0 True False 501763.9357329972 620208.2927033034 699019.8738815235 782063.1168241218 702087.3414937386 613007.3711128782 686160.5405597142 630611.4882115817 741167.2813947777 697715.5923336911 0.7191525332760836 0.8889127597519436 1.0018693598970174 1.1208909839728656 1.006265804015394 0.8785920478894785 0.9834387364981654 0.9038231267017235 1.0622770789968319 1.0 19.412279549344753 4.6170131412970745 2.5857512494252344 0.986530117585005 0.697710821812476 0.6213572792280638 0.0660200797147826 0.26629201788824275 2.6990105286756854 0.01766634634269975 0.14687168115412622 41401.220220668765 -4.6170131412970745 -0.28881929577252896 ACTLTVFPPEETTPS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ACTLTVFPPEETTPSPSR 18 0 Q9P2N7-5;A0A0C4DG80;Q9P2N7-2;Q9P2N7-3;Q9P2N7-4;Q9P2N7 Q9P2N7-5 KLHL13 Kelch-like protein 13 1 ACTLTVFPPEET(0.003)T(0.003)PS(0.853)PS(0.141)R 74.786 0.018852 38942000.0 17003.0 15052.0 10292.0 14290.0 11250.0 16012.0 17268.0 14810.0 19910.0 16517.0 True False 16911.457737210898 15552.996720873864 11741.024140332329 16099.112534813281 12682.620816025825 14905.128128193703 16432.68086983404 15915.1974036562 15003.44728033148 15462.870919084857 1.093681621330625 1.0058285296605411 0.759304284551785 1.0411464092960352 0.8201983242563615 0.963930191630665 1.062718621646916 1.0292524258230122 0.9702885938091652 1.0 13.916520582137096 2.4475065715381192 11.24134153174656 1.0199259364420097 0.9375562354241611 0.11068014110232494 0.09491735719632748 1.2108588027921472 452.9229613086541 0.03244778993643483 0.02719681284449519 280.2248023633962 -2.4475065715381192 -0.08236970101784857 ACVQGECGVCHYCR ddPTM_BT-474_Trastuzumab_2h_R1 1 ACVQGECGVCHYCR 14 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 0 122.78 0.00010672 229230000.0 81344.0 90426.0 95859.0 89453.0 78284.0 98621.0 94947.0 89398.0 125270.0 106680.0 False True 80906.052942168 93435.77474632864 109355.1139786354 100777.74062817715 88253.0033743792 91803.56239886284 90354.05087723729 96069.33271384574 94398.8870320002 99871.59106665698 0.810100771180957 0.9355590889101495 1.094957162599411 1.0090731463456448 0.8836647382084538 0.9192159794229239 0.9047022272523181 0.9619285293024569 0.9452025948900308 1.0 16.60778673468481 -3.390561674542505 0.006635164319970194 1.663804453996119 0.29400165323055916 0.046760926238683664 0.07189272072572475 136393.11840642974 90.97355492122222 10124.465684120665 8703.754119422098 0.000406853752046224 3.390561674542505 -1.3698028007655598 ADAASSLTVDVT(ph)PPTAK ddPTM_BT-474_Trastuzumab_2h_R1 6 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8;Q9H8Y8-3;Q9H8Y8-2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 1 ADAASSLTVDVT(0.99)PPT(0.01)AK;ADAASSLTVDVT(0.993)PPT(0.007)AK;ADAASSLTVDVT(0.924)PPT(0.076)AK;ADAASSLTVDVT(1)PPTAK;ADAASSLTVDVT(0.996)PPT(0.004)AK;ADAASSLTVDVT(0.987)PPT(0.013)AK 248.97 6.696e-20 2185490000.0 2211560.0 1993250.0 1802030.0 1732550.0 1798300.0 2308630.0 2199700.0 2064910.0 2924630.0 2270010.0 True False 2199653.206687416 2059594.1213049314 2055740.1604744508 1951890.6523576481 2027302.8456408205 2149039.8420304656 2093292.1073299693 2219004.069600523 2203894.124534195 2125136.018346663 1.0350646677188817 0.9691587284409575 0.9673452158953093 0.9184779870590126 0.9539638066169731 1.0112481382261826 0.9850155892414509 1.0441703733048053 1.0370602660289032 1.0 21.01912375255765 2.2346043471349963 1.6646928202680622 1.0284629403780103 0.9677000700228003 0.342505288795366 0.03147936218105057 0.388565783520617 2.13738156068522 0.0174645273742597 0.010718308804934733 171.63440434047442 -2.2346043471349963 -0.06076287035521 ADADPSPTS(ph)PPTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADADPSPTSPPTAR 14 0 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 ADADPS(0.032)PT(0.302)S(0.658)PPT(0.008)AR;ADADPS(0.089)PT(0.19)S(0.719)PPT(0.001)AR 87.251 0.007360300000000002 799880000.0 928940.0 1180190.0 1059230.0 1203890.0 1125560.0 1080760.0 1021180.0 960010.0 1122850.0 1108760.0 True False 923938.6902549372 1219471.9107100796 1208360.3770077946 1356302.350562379 1268893.394283202 1006049.6050353878 971781.6221135688 1031650.821032004 846138.6629191465 1037997.9875428058 0.8901160708819149 1.1748307080988343 1.1641259342595431 1.306652196670513 1.2224430196507239 0.9692211517836873 0.9362076167546458 0.9938851841843863 0.8151640687879972 1.0 19.985372215944025 2.668358515600748 6.039985616623851 0.9443967126624605 1.1619495546723946 0.47233762597051077 0.11015814722927117 0.20604931371458587 13.855587921233697 0.03653726127907464 0.034497202623496 465.97059943122565 -2.668358515600748 0.21755284200993408 ADAEEEAATR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADAEEEAATR 10 0 Q13409-2;Q13409-3;Q13409-6;Q13409;Q13409-5;Q13409-7 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 ; 107.56 0.0052746 216520000.0 132286.0 163812.0 166333.0 163488.0 142249.0 163922.0 142127.0 136400.0 177687.0 161927.0 False True 131573.78687435627 169264.38339355477 189751.2406076463 184185.56403719774 160363.56697412077 152590.4579708824 135251.77403213465 146578.8606251657 133898.41973381524 151592.68022732058 0.8679428761141699 1.1165735914144048 1.2517176972074449 1.215003018358159 1.0578582470713482 1.0065819651850312 0.8922051765910995 0.9669257143904546 0.883277606366139 1.0 17.209840567954426 2.6974588742002856 2.431265418404904 0.9365942706929802 1.1221769693579362 0.3727732698239362 0.10132483913648759 0.30780588144650617 3.5922425357353895 0.037242533474501155 0.036092794880345086 498.26327037049623 -2.6974588742002856 0.18558269866495603 ADAETLRK ddPTM_BT-474_Trastuzumab_2h_R1 6 ADAETLRK 8 1 P08758;D6RBE9;E9PHT9;D6RCN3 P08758 ANXA5 Annexin A5;Annexin 0 ;;;;; 141.48 0.0010147 6104900000.0 5348120.0 5214270.0 4019640.0 3792480.0 3869470.0 4765860.0 4407360.0 4482620.0 6139250.0 4984890.0 False True 5319326.316151991 5387823.824857224 4585570.372662792 4272607.57914827 4362224.068354438 4436407.31582771 4194159.1590497927 4817135.866683146 4626314.099235308 4666750.052420957 1.1398352721702973 1.1545130474819831 0.9826046651639182 0.9155424077044326 0.9347455979759317 0.9506417241108182 0.8987323323377905 1.0322249558199874 0.9913353077127686 1.0 22.15398676904764 4.2068402810142365 5.245813242497913 0.9604576316453092 1.1488430297591001 0.7888185507542906 0.03815243619303666 0.07361249476649105 5.135115797326037 0.0101981966105865 0.02433926759110615 16100.534024889514 -4.2068402810142365 0.18838539811379096 ADAHEEDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADAHEEDELR 10 0 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 0 ; 118.4 0.0008295999999999999 139170000.0 351940.0 420300.0 340700.0 389620.0 389420.0 413940.0 394940.0 357880.0 463790.0 419540.0 False True 350045.19414421014 434289.43142328516 388667.59858251316 438945.85205136094 439010.3287268254 385325.3021099492 375835.24338268756 384586.82287781744 349495.16896760097 392764.59801373497 0.8912340773950534 1.1057244813293943 0.9895688169149132 1.1175799811672715 1.1177441422851284 0.981059148555121 0.9568969435721512 0.979178940318772 0.8898336834201619 1.0 18.583305372083938 2.5268825037128364 9.6669111323844 0.9588463408921959 1.0489384423113768 0.26819296212976385 0.0692386472183821 0.699488173124965 132.97383236284358 0.02172232588512488 0.02039573412661255 336.4205401002075 -2.5268825037128364 0.09009210141918089 ADALQLSVEEFVER ddPTM_BT-474_Trastuzumab_2h_R1 2 ADALQLSVEEFVER 14 0 B2WTI3;B2WTI4;K7EJU9;Q6NYC1-2;Q6NYC1;Q6NYC1-3 B2WTI3 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 0 ; 172.99 3.1398e-07 7087500.0 13805.7 18872.9 16793.1 20140.6 14989.6 17264.3 18130.2 15178.6 20793.0 20047.7 False True 13731.371645157467 19501.07306759103 19157.42251175814 22690.397894937745 16898.436709680067 16070.859576790817 17253.172961910175 16311.304207369069 15668.843761925278 18768.238622300523 0.7316281469717556 1.039046522161102 1.020736303352153 1.208978548896799 0.9003741400432352 0.8562795848991037 0.9192750214402038 0.8690908366855421 0.8348595772491657 1.0 14.196005640793913 3.037088768831767 24.999954239119088 0.887340077460966 1.0106440392109828 0.15483909544231866 0.11655860817179088 268.40675743444905 180919.8621167876 0.033280876463220345 0.03977816714098795 1089.152690985072 -3.037088768831767 0.12330396175001679 ADAPDAGAQS(ph)DSELPSYHQNDVSLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 ADAPDAGAQSDSELPSYHQNDVSLDR 26 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 ADAPDAGAQS(0.999)DS(0.001)ELPSYHQNDVSLDR;ADAPDAGAQS(0.999)DS(0.001)ELPSYHQNDVSLDR;ADAPDAGAQS(0.998)DS(0.002)ELPSYHQNDVSLDR;ADAPDAGAQS(1)DSELPSYHQNDVSLDR;ADAPDAGAQS(0.999)DS(0.001)ELPSYHQNDVSLDR 343.69 3.818399999999998e-96 9017040000.0 1052321.0 1383370.0 1429688.0 1490529.0 1476620.0 1614371.0 1395641.0 1321824.0 1582117.0 1653192.0 True False 1046655.4206598535 1429414.6341851742 1630975.6433291328 1679229.8185726204 1664658.8043875631 1502773.3325905695 1328128.5129636356 1420465.2189662687 1192225.4646316525 1547683.8711911216 0.6762720993237018 0.9235830784261352 1.0538170447391872 1.0849953597308337 1.0755806372178678 0.9709820981942596 0.8581394028106575 0.917800621565602 0.7703288034617154 1.0 20.56167938703343 -0.6933535015888553 7.465708659770186 1.000005965710937 0.93569906424651 0.025081693016110074 0.12577174319537796 0.0 0.0 0.12598439553876473 0.029694806803049596 0.20260329232412488 0.6933535015888553 -0.06430690146442708 ADATNVNNWHWTER ddPTM_BT-474_Trastuzumab_2h_R1 4 ADATNVNNWHWTER 14 0 O95433;O95433-2;G3V3W9 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 ;;; 262.66 1.4276e-24 5892320000.0 1781290.0 2280530.0 2052580.0 2243600.0 2087420.0 2174820.0 2226770.0 1922240.0 2257930.0 2397910.0 False True 1771699.7325599247 2356436.0624405025 2341565.42265481 2527639.529958508 2353240.5638923235 2024479.8123756086 2119052.6280125263 2065687.3097369378 1701493.4062118973 2244873.3308459623 0.789220357432049 1.0496966711046003 1.0430724043447075 1.1259608705877349 1.048273206134764 0.9018236283348334 0.9439519811186756 0.9201798967242844 0.7579462871389289 1.0 21.098202611120865 2.730981280180266 23.59114702321679 0.9048934923535472 1.0215222489986835 0.21885849989521688 0.09962570536721087 395.8249450363124 1232024.825192738 0.03191169937597742 0.030657411827020083 538.2465814475311 -2.730981280180266 0.11662875664513628 ADCILYYGFGDIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADCILYYGFGDIFR 14 0 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 0 148.78 1.7831e-05 290510000.0 230670.0 280260.0 251970.0 261000.0 266770.0 283510.0 305040.0 255080.0 368040.0 306360.0 False True 229428.09834984652 289588.28467925236 287445.1858374986 294042.5732390668 300741.5782303296 263911.6210107541 290284.04983403854 274115.364869995 277341.47348333464 286807.8425120084 0.7999366277449006 1.0096944426027248 1.0022221962966842 1.0252250101102292 1.0485821294016318 0.9201687746725556 1.012120335663013 0.9557457092844943 0.9669940370327308 1.0 18.12972494826216 4.741784229117074 24.98513802378246 0.9919412016863777 0.799936556085063 0.7325583606512618 0.03506106433697524 159.23277147783736 1234101.2071849864 0.0084644563681897 0.060941872438019 55180.32183210613 -4.741784229117074 -0.1920046456013147 ADDADEFGYSR ddPTM_BT-474_Trastuzumab_2h_R1 6 ADDADEFGYSR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;;;; 328.65 4.7113999999999995e-57 6173910000.0 2276840.0 2710720.0 2374200.0 2213950.0 2468550.0 2476060.0 2547890.0 2444990.0 2839460.0 2610670.0 False True 2264581.7464207057 2800944.676535154 2708466.7230836605 2494235.842998595 2782905.210257827 2304895.800218294 2424638.826815001 2627447.5692076553 2139713.1298146676 2444054.805492966 0.9265674981310165 1.1460236776360682 1.1081857563080966 1.0205318789876758 1.1386427194690156 0.9430622402730434 0.9920558333494292 1.0750362730420437 0.8754767384944493 1.0 21.220845205841865 2.7302095635225183 24.90366055056582 0.990698206579807 1.0719219955517454 0.25372710643988616 0.07600861958803373 922.7577139068183 2751749.7897531777 0.023785886784009887 0.02276173717554934 537.2909970669313 -2.7302095635225183 0.08122378897193838 ADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADDFPVRDDPSDVTDEDEGPAEPPPPPK 28 1 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 ADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK;ADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK 164.11 1.7362000000000006e-11 559750000.0 425750.0 328540.0 309470.0 285850.0 306110.0 442480.0 383550.0 393290.0 433110.0 381260.0 True False 423457.80930527195 339475.25529337634 353040.6860385393 322038.58069113945 345091.2940438817 411892.39908588235 364996.22119671304 422639.2968861539 326375.84387666354 356927.6603868917 1.1863967304922933 0.9511038032900061 0.9891099099908953 0.9022516785111744 0.9668381925621008 1.1539940576177583 1.0226055912872525 1.1841035139390266 0.9144033374238592 1.0 18.44527218293135 2.768046619112497 24.897587213159465 1.0733048379389005 0.9905314583973027 0.054374572265723176 0.10012754858033299 1334.6593596002283 1126966.1685709404 0.029642016069510852 0.03143633314473505 586.201086583795 -2.768046619112497 -0.0827733795415978 ADDGRPFPQVIK ddPTM_BT-474_Trastuzumab_2h_R1 8 ADDGRPFPQVIK 12 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;;;;; 166.7 4.6691e-05 55180000000.0 37885350.0 37406400.0 34654770.0 32407190.0 30424510.0 46377300.0 47086400.0 37152070.0 50577100.0 44388950.0 False True 37681379.48505811 38651449.41135369 39533860.39133937 36509936.93121597 34298891.008300975 43171346.411421314 44808650.94448419 39924546.11778885 38113051.403418034 41556009.207707934 0.906761265181086 0.930104939051378 0.9513391960652109 0.8785717788426132 0.8253653722345194 1.038871326542438 1.0782712728866406 0.960740621608668 0.9171489786932839 1.0 25.30855377724341 2.72436526108346 24.995481676877493 1.000241948630901 0.9020246395319056 0.49511403498643214 0.05071016715846019 759.2300482096738 1336866.6541961734 0.017709135899338976 0.01676890180543999 530.1091019205029 -2.72436526108346 -0.09821730909899551 ADDLGKGGNEESTK ddPTM_BT-474_Trastuzumab_2h_R1 4 ADDLGKGGNEESTK 14 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;; 195.2 5.1532e-08 2073140000.0 1220906.0 1642020.0 1535400.0 1799290.0 1777770.0 1876550.0 2497580.0 1895180.0 3829660.0 2373090.0 False True 1214332.7777514097 1696673.6430779495 1751570.9740639569 2027079.9295146416 2004158.4718316656 1746828.5154235517 2376762.5137178674 2036607.9551290462 2885891.6078148754 2221637.3644954325 0.5465936057603186 0.7637041356041875 0.7884144379529578 0.9124261060377972 0.9021087346929999 0.7862797697500388 1.0698246940304168 0.9167148463005756 1.2989931002849806 1.0 21.08319191569105 5.370736504315588 0.29991802639688675 1.0862452046614977 1.730308705260182e-17 0.6398994125166501 0.1150077676600917 7.293786403195612 0.4004329325416074 0.12113351432835964 3.1105683309024488 234820.7681096451 -5.370736504315588 -1.0862452046614977 ADDLLPLGDQTQDGDFGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADDLLPLGDQTQDGDFGSR 19 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 ;; 252.2 1.7687e-30 90834000.0 70856.0 80824.0 78158.0 76191.0 78546.0 81411.0 77106.0 68379.0 103996.0 91741.0 False True 70474.51916884162 83514.17798086017 89161.96703848551 85836.77278796077 88548.36752138365 75783.24919088042 73376.08820647572 73481.78820152649 78367.57927500509 85886.01083657828 0.8205587671656883 0.9723839443395366 1.0381430709145478 0.9994267046735795 1.0309987232946614 0.8823701142096222 0.8543427211457507 0.8555734220948481 0.9124603472866021 1.0 16.390135543040763 2.7159477040686597 23.703898362335835 0.8852603931632991 0.9774715173354896 0.19329407382786534 0.06886676577527205 527.8852485784528 553352.4893453155 0.022351309675933958 0.02109034407468295 519.9333845528065 -2.7159477040686597 0.09221112417219057 ADDPYAHLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADDPYAHLSK 10 0 Q5STZ8;Q8NE71 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 ; 107.06 0.0023346 944990000.0 1628240.0 2109000.0 2153000.0 2023110.0 2021340.0 2612700.0 2483800.0 2364900.0 2758900.0 2602600.0 False True 1619473.7367544724 2179196.790082576 2456123.685788527 2279235.5185658582 2278745.6675791717 2432090.1986342533 2363649.104962577 2541380.846718873 2079006.0623659703 2436499.8398020384 0.6646722114646443 0.8943964429973582 1.0080541133908234 0.9354548197922485 0.9352537727908556 0.9981901738322531 0.9701002505112497 1.0430457680331127 0.8532756819450011 1.0 21.216378696998333 4.702955953365289 2.704762825824781 0.9719489174555673 0.6178760958117032 0.7678757030295664 0.049985752776101074 0.17549834762297956 1.815479294105737 0.011933832514120106 0.1339077409605103 50461.011684269404 -4.702955953365289 -0.3540728216438641 ADDTDSQSWR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADDTDSQSWR 10 0 O75369-8 O75369-8 FLNB Filamin-B 0 188.87 0.007427199999999998 0.0 253140.0 294050.0 278210.0 278170.0 296750.0 265410.0 284050.0 285200.0 316590.0 283700.0 False True 251777.12236649785 303837.27649302105 317379.5497553299 313386.2934785876 334539.3535249483 247062.83140793696 270309.4163236251 306483.0722162556 238570.6365886561 265594.02311221 0.9479773656658129 1.1439913930768457 1.1949800151234624 1.1799448263419166 1.2595891639610046 0.9302273767793192 1.0177541390282827 1.1539531975340067 0.8982530321770952 1.0 18.018863155295605 2.733878265395612 24.998757960255215 1.022893194381644 1.1499091395011758 0.3388421406023261 0.09880489194092905 550.2990150893992 2938000.5813592547 0.032555967768764515 0.03162554954153933 541.8489865200215 -2.733878265395612 0.12701594511953185 ADEASELACPT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 7 ADEASELACPTPK 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK 204.52 8.635e-07 18129450000.0 21364180.0 12065134.0 9202842.0 9139534.0 8391058.0 13161762.0 9852622.0 9470369.0 17906410.0 10287159.0 True False 21249157.628663547 12466714.691662474 10498522.161063362 10296598.06730248 9459609.498602677 12251920.372395143 9376013.033188898 10177096.024339361 13493615.18910097 9630623.705340082 2.206415521860864 1.2944867407445073 1.0901186135267686 1.0691517374511397 0.9822426654835886 1.272183479207227 0.9735623901482098 1.0567431908585803 1.4011154004095185 1.0 23.199197803266554 4.751982667450349 2.6648982684594347 1.0992646359514644 2.4491919620755556 0.8682643637876315 0.12800987117383944 0.1522550832106092 1.3900759965942298 0.030281247125030372 0.4630133781154756 56491.44288137176 -4.751982667450349 1.3499273261240912 up ADEDPIMGFHQMFLLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ADEDPIMGFHQMFLLK 16 0 P61970;H3BRV9 P61970 NUTF2 Nuclear transport factor 2 0 ;;; 206.43 2.0033e-11 6992660000.0 7547060.0 7710930.0 7158130.0 6249790.0 6310120.0 8588080.0 8391390.0 7539370.0 10902170.0 8577290.0 False True 7506427.467517187 7967583.643694387 8165932.484418681 7041012.773194598 7113676.37898853 7994406.24376578 7985466.407477216 8101996.07354514 8215476.285093496 8029880.0088125765 0.9348119099263109 0.9922419307573935 1.0169432762951365 0.8768515551250177 0.8859007072560813 0.9955822795598608 0.9944689582799969 1.0089809641804632 1.0231132066826942 1.0 22.93694699891179 2.507219352505185 23.553060772160453 1.0055892365649206 0.9443883756889321 0.38299610340123347 0.04012655980927081 410.5813682653502 321297.23820776027 0.014249611969476625 0.013412226376681274 321.5284097239793 -2.507219352505185 -0.06120086087598853 ADEESDSQMS(ph)PSHSSTDDHSNWFIIGSK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADEESDSQMSPSHSSTDDHSNWFIIGSK 28 0 B4E2D5;R4GND2;F6S7C4;Q8NEM7-2;Q8NEM7;Q8NEM7-3 B4E2D5 SUPT20H Transcription factor SPT20 homolog 1 ADEES(0.17)DS(0.139)QMS(0.602)PS(0.022)HS(0.022)S(0.022)T(0.022)DDHSNWFIIGSK;ADEES(0.006)DS(0.157)QMS(0.814)PS(0.006)HS(0.006)S(0.006)T(0.006)DDHSNWFIIGSK;ADEES(0.137)DS(0.137)QMS(0.686)PS(0.034)HS(0.002)S(0.002)T(0.002)DDHSNWFIIGSK 297.54 3.7398999999999995e-71 545467000.0 493415.0 671589.0 676140.0 669018.0 701689.0 910706.0 833068.0 590922.0 910341.0 849933.0 True False 490758.50846356066 693942.4338808773 771334.6348857654 753715.6102040394 791044.9349134536 847751.0377913296 792769.3182111946 635019.6002811157 685999.6584944369 795689.548275749 0.616771339433865 0.8721271196594745 0.969391437347945 0.9472483480992472 0.9941627819890808 1.0654293997305824 0.9963299378873551 0.7980745777762152 0.8621448653950414 1.0 19.60184612313661 4.721245196676663 2.675779047313578 0.9462932342400213 0.5584867226634604 0.6640557041161116 0.07190331156326812 0.30504613887797616 2.9826307749924394 0.02056686018414038 0.25858066755407577 52631.43323386445 -4.721245196676663 -0.3878065115765609 ADEGISFR ddPTM_BT-474_Trastuzumab_2h_R1 7 ADEGISFR 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ;;;;;; 193.86 0.00039181 19369043870.0 6814987.0 8186925.4 7027031.1 7339673.1 7216633.3 7645181.1 8037817.9 6918525.6 8719999.7 8187340.0 False True 6778295.867208229 8459422.262838084 8016375.998830737 8268874.961906353 8135628.774418249 7116687.725377509 7648997.940730812 7434821.111833139 6571072.615944568 7664816.951665569 0.8843389098464122 1.1036691829933194 1.0458665939946254 1.0788091893191947 1.061425057600413 0.92848762994021 0.9979361528090609 0.9699933029995645 0.8573032673032942 1.0 22.869819907708205 2.741120488592974 24.9999992604122 0.9546138071403809 1.0417039888870507 0.2796877538316862 0.0668667920146632 292.6970209372419 2858527.085145294 0.020153023263435446 0.02047183491456272 550.9605310696602 -2.741120488592974 0.08709018174666983 ADEHVIDQGDDGDNFYVIER ddPTM_BT-474_Trastuzumab_2h_R1 4 ADEHVIDQGDDGDNFYVIER 20 0 P13861-2;P13861;H7C1L0 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 0 ;;; 290.01 1.9450999999999998e-54 3125920000.0 1103540.0 1144018.0 1071727.0 1095930.0 1213064.0 1229983.0 1264785.0 1138013.0 1297720.0 1230898.0 False True 1097598.6632548193 1182095.9475565157 1222616.8459819236 1234674.6256317669 1367540.5100063614 1144957.1702785457 1203602.5176020996 1222937.308772924 977914.2945570947 1152341.035815204 0.9524946427672272 1.0258212723634041 1.060985253481843 1.0714489784339905 1.1867498140764536 0.9935922914248778 1.0444846449043026 1.0612633506605775 0.8486327086887832 1.0 20.136136315502657 ADEICIAGS(ph)PLTPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADEICIAGSPLTPR 14 0 Q08999;F5H837 Q08999 RBL2 Retinoblastoma-like protein 2 1 ADEICIAGS(0.999)PLT(0.001)PR;ADEICIAGS(1)PLTPR;ADEICIAGS(1)PLTPR 193.96 2.0868e-07 988770000.0 1135840.0 1371040.0 1222450.0 1231580.0 1137580.0 1303450.0 1300350.0 1226690.0 1500980.0 1282990.0 True False 1129724.7636436867 1416674.2375888184 1394560.3342741216 1387497.9017232575 1282444.0700350814 1213345.5694912607 1237447.102680605 1318231.836805606 1131083.591101553 1201108.4797769985 0.9405684687643158 1.1794723469539092 1.161061101269587 1.1551811722958318 1.0677171060129256 1.0101881636174395 1.030254238909672 1.097512721790419 0.9416997799495626 1.0 20.19593502525423 3.0189857421165733 5.610049480934567 1.0300105106239859 1.1176284637576563 0.2573573834328594 0.07220937551617498 0.24553773384808777 24.490472185532283 0.021137858190203442 0.024717122923417673 1044.6859216296195 -3.0189857421165733 0.08761795313367049 ADEICIAGSPLT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADEICIAGSPLTPR 14 0 Q08999;F5H837 Q08999 RBL2 Retinoblastoma-like protein 2 1 ADEICIAGS(0.038)PLT(0.962)PR 112.5 0.0065946 155220000.0 104920.0 112650.0 86589.0 102100.0 99862.0 99894.0 104100.0 100680.0 128680.0 114580.0 True False 104355.12237770784 116399.48715163705 98779.97855491983 115025.84953145121 112578.83377155299 92988.56290518233 99064.28529938159 108193.25284268112 96968.53822365917 107267.40630312676 0.9728502438365192 1.0851337900601787 0.9208759860919697 1.0723280584076014 1.0495157630027585 0.8668855350376062 0.9235264346695958 1.0086312009534193 0.9039888402786207 1.0 16.710852247566084 2.7661433852984416 24.991156515866507 0.9453312963727384 1.0211360773543574 0.30817892015841764 0.05936268223226726 954.7925125506579 865080.760568308 0.01777496192114923 0.018849416424437864 583.6377644742475 -2.7661433852984416 0.07580478098161902 ADEIEMIMTDLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ADEIEMIMTDLER 13 0 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3;P39880-9;Q13948-9;Q13948-10;Q13948-2;Q13948 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1;Protein CASP 0 ; 141.95 9.3287e-05 30274000.0 39459.0 46075.0 38492.0 38451.0 39573.0 39552.0 39418.0 37516.0 49685.0 42317.0 False True 39246.55712830705 47608.57852207432 43911.33902153829 43318.89265753013 44612.38698245245 36817.863335393275 37511.200748617 40315.634422387986 37440.79749489046 39616.29283059356 0.9906670797323828 1.201742392344918 1.1084161561837986 1.0934615422692264 1.1261121067845268 0.9293616516021105 0.9468629714804887 1.017652878192943 0.9450858427110808 1.0 15.273806263180434 2.7449189574177817 24.892742697248657 0.971184259233038 1.1091565565011803 0.6133277609340768 0.05399790032031645 308.6443815043784 1208336.2297921767 0.015974364132340255 0.016568006507621878 555.8005310774574 -2.7449189574177817 0.1379722972681423 ADEPS(ph)S(ph)EES(ph)DLEIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADEPSSEESDLEIDK 15 0 P50502;Q3KNR6;F6VDH7;Q8IZP2 P50502 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 3 ADEPS(1)S(1)EES(1)DLEIDK 133.71 9.0955e-06 0.0 207890.0 138690.0 124430.0 106050.0 119250.0 145510.0 126200.0 133580.0 164330.0 133480.0 True False 206770.7433387504 143306.21281012456 141948.66243505172 119475.91912644845 134435.78064987375 135451.23619369618 120095.22386918328 143548.41790549606 123833.07340918484 124961.19212202265 1.6546796635618042 1.1468057432597818 1.1359419674585136 0.9561041880088826 1.0758202476061474 1.0839464148311755 0.9610601645982392 1.1487439857753858 0.9909722475139624 1.0 16.931120596316205 5.001936052050783 1.6195220417041227 1.0460288866090242 2.27435160161774 0.8918208522852014 0.06359836912785992 0.603919037293949 0.8865273636588037 0.015834769412713508 1.4256996337476704 100446.78759191526 -5.001936052050783 1.2283227150087157 ADEQTTCEVLDYFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADEQTTCEVLDYFLR 15 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 0 131.69 0.00012104 13584000.0 8840.0 12233.0 8113.0 11561.0 10021.0 13602.0 11272.0 9736.0 11480.0 10070.0 False True 8792.406422216329 12640.168009995341 9255.239880539852 13024.621414623965 11297.11495087954 12661.725755663922 10726.730296778385 10462.549758406265 8650.907824118794 9427.323978639257 0.9326513485840154 1.3408012749573317 0.9817462411932252 1.3815820315643743 1.1983374048114734 1.3430880050747465 1.1378340577966097 1.1098112022152475 0.9176419356882514 1.0 13.20263259314067 1.491567705477728 2.4080736738183544 0.960616283613792 1.200581439462253 0.2841263405564147 0.14183323151826757 0.318020452762137 3.6657638405660946 0.10507687983290315 0.0354138130887433 31.014708627826995 -1.491567705477728 0.2399651558484609 ADEVAPAKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADEVAPAKK 9 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 96.89 0.011324 462560000.0 654630.0 595650.0 577480.0 484280.0 538290.0 675580.0 710170.0 679610.0 1003410.0 754420.0 False True 651105.5448162303 615475.8501719709 658784.1644538584 545589.7983456535 606838.0408052036 628878.7447442607 675816.3639871463 730325.9491896549 756133.0505051435 706272.2697085423 0.9218902861426548 0.8714427517109792 0.9327623251097189 0.7724921701524573 0.8592126108188104 0.8904197031603412 0.9568779534074526 1.0340572333259508 1.070597109549802 1.0 19.429864927671886 2.018431850530605 2.0637800373887774 1.0407519871437958 0.8699542172654269 0.7327104422208874 0.04359295350587747 0.1635468960772082 1.3067523962267036 0.0249071516869729 0.01327654584391267 104.33543967600428 -2.018431850530605 -0.17079776987836892 ADEVVWVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ADEVVWVR 8 0 P14868;C9J7S3;H7C278;C9JLC1;C9JQM9 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ;;; 147.52 0.0012469000000000002 1726890000.0 935700.0 1133250.0 995170.0 1031510.0 1073310.0 1162400.0 1053160.0 1037090.0 1281280.0 1174050.0 False True 930662.295166042 1170969.5411859078 1135281.285827295 1162099.060236897 1209989.6664932177 1082046.023995275 1002214.6273381053 1114482.922036314 965525.7122723804 1099121.123845225 0.84673315340366 1.0653689714281211 1.0328991602450195 1.0572984496661721 1.100870177310508 0.9844647696422997 0.9118327412650421 1.0139764379537592 0.8784525120348273 1.0 20.067918950281012 2.484606829353174 24.512946363645792 0.9562462465809867 1.0275205654071564 0.16274940415869932 0.07326936463509524 476.8503785063224 1561547.5557919876 0.024101998850622405 0.02099373587311364 305.2156717538163 -2.484606829353174 0.07127431882616975 ADEWKDPWR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADEWKDPWR 9 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 0 115.78 0.0012953 126100000.0 734690.0 711660.0 605430.0 585160.0 580690.0 757450.0 689490.0 698930.0 937150.0 758430.0 False True 730734.510671733 735347.1728924447 690669.2815081034 659241.1960021943 654637.4294807154 705089.2643455103 656136.7345924174 751087.7056946259 706201.9396666312 710026.3480754091 1.0291653438671047 1.0356618101365815 0.972737537670574 0.9284742711156106 0.9219903335350437 0.9930466189835332 0.9241019525133618 1.0578307519580328 0.9946137091684776 1.0 19.437513036423752 -1.1502786584940992 7.356645110238189 1.000000008483814 0.9848752046375404 0.010408502297414857 0.04582717703252922 6.695426831448472e-09 7.61375375360198e-10 0.04698597967732211 0.01107469534585808 0.07074916873632545 1.1502786584940992 -0.015124803846273682 ADEWLMK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADEWLMK 7 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ; 110.35 0.015875 617120000.0 784430.0 696020.0 680300.0 638340.0 610010.0 817450.0 895970.0 700340.0 1080210.0 805340.0 False True 780206.716038366 719186.6049470254 776080.3267263974 719153.7785495258 687691.1576874598 760941.6055703181 852628.5081622186 752602.9270544626 814006.7195724194 753942.5117137373 1.0348358182707182 0.9539011181532787 1.0293627361088051 0.9538575784974168 0.9121267828820452 1.0092833256486249 1.1308932642943355 0.9982232270518481 1.0796668272785868 1.0 19.524094996302843 2.473138205578446 24.992906096931176 1.0517207073040167 0.9755391782989147 0.34498291747714627 0.048947714508431155 125.50419515406995 787505.715458026 0.01627814152412924 0.013673210317169322 297.26118558173 -2.473138205578446 -0.076181529005102 ADFCIIHYAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADFCIIHYAGK 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ; 147.91 3.5079e-05 5421900000.0 9841200.0 10132200.0 9563500.0 8861100.0 8470300.0 10581400.0 11216200.0 9643300.0 13132800.0 10764800.0 False True 9788216.072660103 10469444.15195575 10909957.672567848 9982914.35145095 9548942.497598538 9849932.723936347 10673629.555955082 10362932.013685197 9896397.410504127 10077781.247791046 0.9712669715673365 1.0388640013644423 1.082575361016018 0.9905865295140346 0.947524287619517 0.9773910032126724 1.0591249495810042 1.0282949945908633 0.9820016099945931 1.0 23.264674710276392 1.2308131813266898 24.924928972789104 0.9910008042403765 1.0142173563043164 0.040023647390415196 0.03983015842893183 689.2474318873134 2217333.9260871005 0.03805531153006934 0.010223704162682286 17.014264553248434 -1.2308131813266898 0.02321655206393991 ADFDNTVAIHPTSSEELVTLR ddPTM_BT-474_Trastuzumab_2h_R1 5 ADFDNTVAIHPTSSEELVTLR 21 0 P00390-5;P00390-4;P00390-2;P00390-3;P00390 P00390-5 GSR Glutathione reductase, mitochondrial 0 ;;;; 208.27 3.2142e-22 1724570000.0 781332.0 1285590.0 1634490.0 1215750.0 705053.0 919059.0 1322190.0 906037.0 2211150.0 1054766.0 False True 777125.3953261469 1328380.0859944343 1864611.9847582357 1369663.8253463432 794837.3203734636 855526.6145621773 1258230.618443704 973650.0817026639 1666241.7103920118 987449.930849395 0.787002328976489 1.3452632325891951 1.888310410994018 1.3870716707308608 0.8049393650670997 0.8663999944040317 1.274222195105514 0.9860247606328145 1.6874189347086455 1.0 19.91334807188319 3.377212793605205 19.721087444138302 1.0954477338943631 1.3901970093050728 0.10973812354889212 0.33975162703507444 5.803941804307403 1128.675936500263 0.0953737462753026 0.1291365244722748 2383.487033269094 -3.377212793605205 0.2947492754107097 ADFFEDENGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADFFEDENGQR 11 0 O95573 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 0 ; 187.97 1.7135e-05 220890000.0 266390.0 345440.0 360030.0 327830.0 424680.0 416820.0 311930.0 273820.0 355840.0 330550.0 False True 264955.7858387115 356937.76157711045 410719.0945631409 369333.2443868332 478760.4807244306 388006.21448873985 296840.75421168236 294253.83882978646 268148.00001171033 309454.01600190724 0.8562040630847024 1.1534436236720564 1.3272378877791313 1.1934996002267326 1.547113483644303 1.2538412637254268 0.9592402711291776 0.9508806595289845 0.8665196964516294 1.0 18.23936551936973 2.2243816226544038 7.928942532928662 0.9411044722516148 1.2372407251655932 0.4067722345875523 0.1636854371881917 0.15588700828801857 54.86218776642002 0.06297380124177769 0.048061180913543736 167.6415326384501 -2.2243816226544038 0.2961362529139785 ADGATSDDLDLHDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADGATSDDLDLHDDR 15 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 0 244.57 4.8413999999999995e-18 687410000.0 616880.0 724360.0 670100.0 680380.0 714360.0 869440.0 722780.0 655030.0 846560.0 793490.0 False True 613558.7866218113 748469.8847151335 764444.2553863861 766516.0382390674 805329.5116565523 809337.6592416146 687816.3701122674 703911.6647749434 637936.6313228235 742848.788859032 0.8259538089362685 1.0075669449023874 1.0290711472526237 1.03186011707226 1.084109611181418 1.089505255147155 0.9259170647214882 0.9475840511985036 0.8587705073904114 1.0 19.50270904621724 -0.9909785165636005 4.870439462520302 1.0000000596311107 0.9833601204565607 0.0023254233047530493 0.08445348889597017 1.913589079207457e-07 3.954750318221282e-08 0.08420801633405862 0.01984777801079136 0.10209899882198963 0.9909785165636005 -0.016639939174549978 ADGATSDDLDLHDDRLS(ph)YLSAPGSEYSMYSTDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSR 34 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 ADGAT(0.066)S(0.066)DDLDLHDDRLS(0.859)Y(0.001)LS(0.008)APGSEYSMYSTDSR 66.898 0.0031293 84038000.0 20025.0 40068.0 26834.0 30297.0 19275.0 23701.0 30644.0 26555.0 43006.0 30077.0 True False 19917.187624986647 41401.63915838254 30611.9939546908 34132.59709357862 21729.55699812425 22062.605656152806 29161.6326485519 28536.66894355774 32407.747550875694 28157.460109784806 0.7073502917994142 1.4703612824792864 1.0871717063732262 1.2122044019772023 0.771715805097533 0.783543883934545 1.0356627527785482 1.013467437485285 1.1509471175496364 1.0 14.78122958382729 3.2658528581889925 24.99508261976613 0.9607597502473036 1.1420568785710619 0.12441807264709381 0.20443323423859494 411.43937049958714 376806.1761754417 0.054936517710867536 0.0743666643343288 1844.3904217705647 -3.2658528581889925 0.18129712832375822 ADHDFVVQEDFMK ddPTM_BT-474_Trastuzumab_2h_R1 5 ADHDFVVQEDFMK 13 0 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 ;;;; 192.65 2.5383000000000003e-06 2656270000.0 4466450.0 4463190.0 4118240.0 3744840.0 3792980.0 4785680.0 4696210.0 4091300.0 5910540.0 4735500.0 False True 4442403.129469249 4611744.581094674 4698052.395616227 4218936.360032906 4275993.520246195 4454857.20587897 4469036.38103563 4396613.5812004395 4453966.614178317 4433276.335734474 1.0020587017464284 1.0402565127559622 1.059724691138137 0.9516520154690385 0.9645222170744244 1.0048679280311366 1.0080662793367767 0.9917300994213888 1.0046670401023885 1.0 22.07994186094275 3.7491113179195774 24.948718740841954 0.9898973666888166 1.0346376214104696 0.4706272422205534 0.02169497262785827 636.4766308469798 1505041.3417023008 0.005857253964666054 0.010428753357180994 5611.918017104919 -3.7491113179195774 0.044740254721652994 ADHGDELPFVFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADHGDELPFVFR 12 0 O00748;O00748-4 O00748 CES2 Cocaine esterase 0 ;; 147.58 6.5701e-05 249034000.0 194247.0 281139.0 242321.0 263915.0 241375.0 252755.0 256896.0 221293.0 268318.0 236014.0 False True 193201.19573487065 290496.541662886 276437.6905081102 297326.6119401851 272112.6755082873 235282.64177127127 244468.95904197876 237807.0073630853 202194.62417699574 220951.38445824885 0.8744059070214973 1.3147532086081064 1.2511245004683196 1.3456653040178987 1.2315499908519738 1.0648615863990227 1.1064377787964204 1.0762865684058271 0.9151091072488962 1.0 17.753369445336176 1.9968596088499824 1.0648028912715344 0.9773669958628224 1.212907495179411 0.31229292774557205 0.1285474523733771 0.6062955608747109 1.2663718432136635 0.10025296879985571 0.046776968934699056 99.27950630596602 -1.9968596088499824 0.2355404993165886 ADHGEPIGR ddPTM_BT-474_Trastuzumab_2h_R1 11 ADHGEPIGR 9 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;;;;; 164.46 6.2246e-05 58440809000.0 6214895.0 7382678.0 6734249.0 6900960.0 6795299.0 6761181.0 7163826.0 5643134.0 7740329.0 7013581.0 False True 6181434.695859741 7628405.974306904 7682372.724058374 7774620.828428629 7660640.048757287 6293796.471578114 6817284.367907099 6064253.314333829 5832828.633044741 6565968.255951212 0.9414353610767247 1.1618097555364706 1.1700289164656383 1.184078345395887 1.1667190199730093 0.9585481114493039 1.0382755600026092 0.9235885825121616 0.8883424965934045 1.0 22.64657634435044 2.731768853319304 23.992471378611345 0.9607027096049703 1.1326739582431968 0.5380694327448068 0.07536437888899916 235.77879942080872 832906.1794639215 0.024438863201732303 0.023546346171924495 539.2235525333297 -2.731768853319304 0.17197124863822655 ADHNTVLPGRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADHNTVLPGRPR 12 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 0 63.944 0.040313 26962000.0 327330.0 175230.0 111130.0 104860.0 106000.0 143870.0 146840.0 112870.0 237450.0 142960.0 False True 325567.69164978183 181062.42462122827 126776.13804072402 118135.26524846183 119498.4716887767 133924.6055335514 139736.7882167264 121292.93254224666 178933.62916698706 133836.1704057864 2.4325837377345185 1.3528661502511137 0.9472486970924481 0.8826856364036718 0.8928712718427438 1.0006607715051683 1.0440883641025407 0.9062791633568931 1.3369601702175637 1.0 17.030108544175377 4.723980101729959 2.3872400319336236 0.9882764790169911 2.745456135993137 0.921361871702539 0.1256119960206395 0.12586192862105058 0.8919550037740629 0.03067228729455563 0.4510374083433823 52963.91766139547 -4.723980101729959 1.757179656976146 up ADHPPAEVTSHAASGAK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADHPPAEVTSHAASGAK 17 0 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;; 201.3 6.7142e-12 1142700000.0 1223260.0 1199060.0 1128300.0 1070710.0 1121110.0 1418850.0 1338000.0 1086970.0 1560480.0 1255640.0 False True 1216674.1040769634 1238969.9872529244 1287154.8326405925 1206261.7762176297 1263876.7131604191 1320768.239113641 1273275.8283436394 1168085.22092182 1175920.6133607063 1175503.9801925127 1.0350233811013623 1.0539904654767887 1.0949812627855116 1.026165624739169 1.0751785910188356 1.1235761523302867 1.0831744084227724 0.9936888692886623 1.0003544293981252 1.0 20.164847993210284 1.7126088621587545 6.492533900914877 0.9981028681750985 1.0711339547103227 0.6034485288804666 0.026788022217780767 0.09414116345193724 9.657304582930065 0.014231712455818576 0.0073296696117993625 51.59514795241223 -1.7126088621587545 0.07303108653522417 ADHQPLTEASYVNLPTIALCNTDSPLR ddPTM_BT-474_Trastuzumab_2h_R1 6 ADHQPLTEASYVNLPTIALCNTDSPLR 27 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 ;;;;; 251.51 3.0319e-47 2447760000.0 1373696.0 1442182.0 1336446.0 1456197.0 1257327.0 1493750.0 1346120.0 1203624.0 1665646.0 1440547.0 False True 1366300.1733679739 1490184.1560525708 1524605.9802031259 1640551.3908927585 1417440.140689006 1390490.5784092762 1281003.032922226 1293444.5347588304 1255169.8618129077 1348610.0571456659 1.0131172951948386 1.10497778668991 1.130501713319531 1.2164757204651035 1.0510377949346004 1.0310545817463725 0.949869108668424 0.9590945343358974 0.9307137042040718 1.0 20.36304183091941 2.6231231702437134 2.006537817155027 0.9568692528578648 1.115195662120571 0.6353090650802563 0.05148242635204267 0.20540493626271544 1.642089895108823 0.020331564118101487 0.0184958669009794 419.8780487058085 -2.6231231702437134 0.15832640926270614 ADIDLTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADIDLTKR 8 1 P62269 P62269 RPS18 40S ribosomal protein S18 0 71.692 0.0771 166840000.0 164060.0 198010.0 155430.0 166830.0 145630.0 188970.0 182720.0 166910.0 263410.0 198120.0 False True 163176.7191887796 204600.64315042738 177313.1929782212 187950.6608945349 164175.1172833638 175906.94868753199 173881.1355418156 179365.6717518066 198496.1350131651 185475.8119809345 0.8797735804254245 1.1031122655037022 0.9559909245548829 1.0133432434513607 0.8851564822923635 0.9484091041780364 0.9374868544028224 0.9670569430920946 1.0701995742364994 1.0 17.5008715307683 1.2815250361022876 12.342128675270073 1.03505772258039 0.9635371519068721 0.18366692650608585 0.062098595791024405 1.3457842791978256 385.2126580449709 0.03976305944949216 0.014504501268863504 19.12163553365075 -1.2815250361022876 -0.07152057067351802 ADIEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ADIEER 6 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 113.25 0.061180999999999985 707750000.0 1064880.0 1309580.0 1153800.0 1275870.0 1187580.0 1120250.0 1200750.0 1089810.0 1452720.0 1282730.0 False True 1059146.8043992913 1353168.5786421723 1316245.0109906169 1437395.011182102 1338811.2736618635 1042809.7542848475 1142665.1351895537 1171137.156143049 1094716.6214506861 1200865.0731995944 0.8819865179168649 1.126828158168327 1.0960806841384796 1.1969662897700033 1.1148723562212732 0.8683821168238135 0.9515349898094944 0.9752445818268841 0.9116066791200068 1.0 20.19564263114114 2.7515416349907524 24.956465390171516 0.9436510572179219 1.0927820710526894 0.4238540202962262 0.08238621709848173 716.7079611435705 1377895.7083138218 0.025182345182142192 0.02655665462317469 564.3410410603112 -2.7515416349907524 0.14913101383476757 ADIKS(ph)PSLDVTVPEAELNLETPEISVGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADIKSPSLDVTVPEAELNLETPEISVGGK 29 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 ADIKS(0.848)PS(0.142)LDVT(0.01)VPEAELNLETPEISVGGK 267.67 6.620199999999998e-59 299010000.0 390980.0 314340.0 289070.0 247800.0 233320.0 374330.0 336700.0 297030.0 516140.0 404620.0 True False 388875.0071219618 324802.6168774573 329768.5433585175 279171.4545924935 263031.9190040128 348453.44817803794 320412.534681093 319195.8868877785 388944.2129216619 378796.8051873893 1.0266058261224955 0.8574587019464927 0.8705684389164325 0.7369952723185943 0.6943879024372761 0.9198954252152665 0.8458691580637439 0.8426572835794471 1.026788525128275 1.0 18.531064637450747 1.2411118239675363 24.999999848857346 1.013394323020642 0.84360653083564 0.36584804220630407 0.08615367773942718 66.14393318407869 648218.2673541151 0.0656140438369735 0.021463072293789322 17.42255418886374 -1.2411118239675363 -0.16978779218500195 ADILEDKDGK ddPTM_BT-474_Trastuzumab_2h_R1 6 ADILEDKDGK 10 1 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;;;; 140.39 3.5909e-05 27493100000.0 24646400.0 17558100.0 16342900.0 14490100.0 13992700.0 22011500.0 23285400.0 21709600.0 36099900.0 20304900.0 False True 24513706.520872463 18142510.744404394 18643838.264966667 16324545.174296556 15774587.403769298 20489896.814497586 22158996.243133727 23329680.59111511 27203563.35887688 19009023.89810051 1.2895826030984163 0.9544156944438003 0.9807888277119619 0.8587787180344277 0.8298473129567471 1.0779036800803357 1.1657093158448804 1.2272950318846378 1.4310868093334985 1.0 24.18018111658071 2.27247705265265 2.553455453437704 1.2339959499394413 0.9736156890681861 0.31879571819746644 0.15212875443363608 0.3018959894744029 4.041770462060731 0.06375887027009663 0.04633161204521206 187.27381282541796 -2.27247705265265 -0.2603802608712552 ADITGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADITGR 6 0 O95994;B5MC07;H7C3Z9 O95994 AGR2 Anterior gradient protein 2 homolog 0 ; 137.83 0.029234 1442610000.0 577550.0 788070.0 679420.0 682460.0 644180.0 536550.0 686440.0 661870.0 744890.0 595990.0 False True 574440.534971837 814300.4335516256 775076.4303754948 768859.3660258006 726212.5046460023 499459.5614028428 653234.2747445488 711262.1003077592 561321.8405146213 557953.4079472901 1.0295492899401815 1.4594416342888483 1.3891418518743348 1.377999229101285 1.3015647799656556 0.8951635643563034 1.1707685004520305 1.2747697033063954 1.006037121593582 1.0 19.089785128875064 2.965914465806074 23.915400487244415 1.109001029450876 1.3310340093590962 0.39332389817479596 0.1457626609737929 412.0125497044532 289079.88900327927 0.04477912578953544 0.047527637198773585 924.5160727878856 -2.965914465806074 0.22203297990822013 ADKDES(ph)T(ph)MINEIT(ph)LAK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADKDESTMINEITLAK 16 1 Q5THK1-4;Q5THK1-2;Q5THK1;H7BZH1 Q5THK1-4 PRR14L Protein PRR14L 3 ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK 56.648 0.050651 6593800000.0 2692950.0 2773910.0 2668080.0 2674370.0 2167820.0 2980630.0 3446770.0 2373960.0 3982620.0 3584150.0 True False 2678451.4564148723 2866237.917485992 3043722.4726329027 3012944.967790666 2443879.0273241913 2774586.063748309 3280036.5671599405 2551116.9499246236 3001156.6653738692 3355406.4784548036 0.7982494739797739 0.8542148129862113 0.9071099111767126 0.897937399577936 0.7283406773565093 0.8269001331326129 0.9775377702287886 0.760300418535115 0.8944241732393419 1.0 21.678056116354526 0.9864894031510747 24.354595669297034 1.000000006230139 0.8449340142324108 0.32254271998111805 0.06899754288337662 601.8839430159519 1084976.146007776 0.06489821324430703 0.016224553345264285 9.693696162511666 -0.9864894031510747 -0.1550659919977283 ADKDYHFK ddPTM_BT-474_Trastuzumab_2h_R1 10 ADKDYHFK 8 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ;;;;;;;;; 96.331 0.0054176 75498883400.0 153502595.0 143326179.0 128855754.0 122226968.0 120157208.0 156142604.0 158187744.0 152689212.0 214599780.0 159290476.0 False True 152676154.08426154 148096704.22551015 146997524.1289081 137700889.6165867 135458516.21123084 145348833.30563384 150535598.48685434 164083656.33954838 161714539.70872593 149124421.4462424 1.0238172433701578 0.9931083238361282 0.9857374312221489 0.9233959688234314 0.9083590393680894 0.9746816242169322 1.0094630847645614 1.1003137832705598 1.0844269378575402 1.0 27.151941299847525 1.996226394863059 3.515028817242795 1.070760931023539 0.9658681950364938 0.5188058467306709 0.03985178846218962 0.1754353864056252 4.46324169460017 0.01943033514941078 0.011833778168904482 99.13485937337471 -1.996226394863059 -0.1048927359870453 ADKEEMNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADKEEMNR 8 1 P21283;E7EV59 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 0 ; 99.815 0.0059698 455510000.0 542010.0 522820.0 466780.0 401570.0 458730.0 491110.0 573040.0 537290.0 620390.0 543730.0 False True 539091.8783829716 540221.7476486355 532498.5666755075 452408.72082610003 517146.54639426945 457160.72164858895 545319.865974617 577385.3081033373 467503.1973000927 509028.6858893271 1.0590599180891367 1.0612795754424151 1.0461071869558314 0.8887686163220724 1.0159477466201332 0.8981040446667179 1.0712949605617714 1.1342883497706695 0.9184221051969106 1.0 18.957387434910956 -0.6048678469072772 7.981510101886948 0.99999999999987 1.0175746665598189 0.0 0.0785183475870594 0.0 0.0 0.07908521046963762 0.018640563010431724 0.24838888221324384 0.6048678469072772 0.01757466655994888 ADKNEVAAEVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADKNEVAAEVAK 12 1 P56192;H0YIP0 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 145.81 5.8563e-05 290850000.0 1376300.0 1176100.0 1083100.0 949930.0 998560.0 1387500.0 1335000.0 1336900.0 1979600.0 1362300.0 False True 1368890.153721305 1215245.7775325377 1235591.0655260328 1070191.0406014824 1125720.6970711795 1291585.390823681 1270420.9498047493 1436666.266640644 1491754.1052809723 1275356.847676291 1.0733389295830673 0.9528672541702536 0.9688198779637938 0.8391306657045657 0.8826711513112981 1.0127247077372568 0.9961297907479504 1.1264817915536816 1.1696758503307987 1.0 20.282469542166737 2.017535892897841 2.0360335971113948 1.1105750344229337 0.9439721993424905 0.43152513419970107 0.0727628724606414 0.28402579530544614 2.2074562080013007 0.0420706166425101 0.0223118765541179 104.1204155896284 -2.017535892897841 -0.16660283508044316 ADLAEEYSKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADLAEEYSKDR 11 1 P68036-2;P68036;P68036-3 P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 0 ; 168.98 1.589e-05 1760920000.0 2937130.0 2987260.0 2768420.0 2788900.0 2842780.0 3278110.0 3585400.0 3148170.0 4397800.0 3321600.0 False True 2921316.8184258216 3086689.1432632 3158189.472461992 3141974.4540476445 3204791.1825228357 3051501.9715409107 3411960.5044419128 3383102.4314833395 3314021.1175008407 3109612.644235171 0.9394471764325933 0.9926281811934138 1.0156215046002197 1.0104070228401174 1.030607843862519 0.9813125686885824 1.0972300716512897 1.0879497926390234 1.0657343845204055 1.0 21.56830344837913 4.660371655198235 0.4477229488722903 1.0642158737792875 0.8758235489345025 0.45397586943888035 0.034649537129237004 4.051461840596479 0.6682531638503085 0.025974183479285776 0.40623290731752554 45747.95183517383 -4.660371655198235 -0.18839232484478496 ADLANKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADLANKR 7 1 P20339-2;P20339;P61020 P20339-2;P61020 RAB5A;RAB5B Ras-related protein Rab-5A;Ras-related protein Rab-5B 0 88.904 0.029287 288260000.0 443120.0 543590.0 555840.0 536140.0 609470.0 582710.0 536580.0 485600.0 687300.0 624240.0 False True 440734.2911552605 561683.0645429052 634097.4405521097 604015.2690283278 687082.3918882897 542428.6292517954 510623.575465343 521837.9378268364 517924.1243481573 584400.4687612482 0.7541648487885091 0.9611269917929789 1.0850392401227946 1.0335639707966988 1.1757047240990346 0.9281796614598541 0.8737562728991477 0.8929457892684013 0.886248646319534 1.0 19.156597809798033 2.4971394729626923 24.78266757836946 0.9018768929089657 1.0106206957911656 0.1357926505448862 0.10596197352335208 1178.6878133395553 1459222.0388502262 0.03554359492255362 0.033101269330953885 314.1517425075323 -2.4971394729626923 0.10874380288219998 ADLDVSGPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADLDVSGPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 113.18 0.004287399999999999 585844000.0 1169700.0 1024020.0 942400.0 915570.0 895280.0 1285480.0 1155340.0 895090.0 1552910.0 1080950.0 False True 1163402.465165887 1058103.886666837 1075081.7285123575 1031481.068124493 1009288.6012596986 1196617.7932944323 1099451.7903725996 961886.1609749227 1170216.138427903 1011962.8455521445 1.1496493871087872 1.0455955881359627 1.0623727276526385 1.0192874893165658 0.9973573690929466 1.1824720626393521 1.0864547005900396 0.9505152933259136 1.1563825130253798 1.0 19.948724891449608 0.23760332278125446 0.007636236250973588 4.7019778509963055e-06 2.0750507593592014 0.051517209181133006 0.07167050633588914 15716.945246604546 42.66106242593952 5929.579816816413 5660.730658334443 1.728237095618015 -0.23760332278125446 2.0750460573813503 ADLGPGS(ph)PPWAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADLGPGSPPWAVK 13 0 A0A087WVC5;A0A0C4DH65;A5PL33-3;A5PL33-2;A5PL33 A0A087WVC5 KRBA1 Protein KRBA1 1 ADLGPGS(1)PPWAVK 160.47 4.5942e-05 165420000.0 435180.0 519910.0 466560.0 416530.0 415890.0 441990.0 466990.0 443880.0 513800.0 424150.0 True False 432837.0392330435 537214.8900577681 532247.5925877814 469262.6552922171 468851.1263268429 411436.2716325464 444399.9096249589 477004.57957696944 387180.8745672684 397080.383866916 1.0900489090342764 1.3529121857548598 1.3404026343597157 1.1817825164828426 1.1807461294385706 1.036153606042755 1.119168631039458 1.2012796374671597 0.9750692562467013 1.0 18.59907156660885 3.2153123352522908 2.0577859201001134 1.0945959921822956 1.2665634557333683 0.4248792398018125 0.09367222370459269 0.32460092920934336 2.8260662307721787 0.0296403453451287 0.04017882813980196 1641.7700744578547 -3.2153123352522908 0.17196746355107262 ADLHDEEDEQDILLAQDLEDMWEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADLHDEEDEQDILLAQDLEDMWEQK 25 0 A0A087WT90;Q9H2W6 A0A087WT90;Q9H2W6 MRPL46 39S ribosomal protein L46, mitochondrial 0 106.12 0.0039671 11685000.0 13867.0 10658.0 10061.0 10439.0 9057.2 19524.0 10977.0 8959.0 15767.0 13107.0 False True 13792.34161276853 11012.745087102952 11477.501348220314 11760.576329665217 10210.580733769704 18174.35183455244 10446.00057378783 9627.56607288021 11881.434116975704 12270.500038532744 1.124024413793797 0.8974976612623695 0.9353735636019562 0.9584431190851044 0.8321242575042316 1.4811419076223444 0.8513100966533161 0.7846107365345345 0.9682925781072275 1.0 13.582906421411897 ADLINNLGTIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADLINNLGTIAK 12 0 P08238;P07900;P07900-2;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 ; 218.75 7.8082e-11 1087080000.0 1780890.0 1834310.0 1679450.0 1605150.0 1638400.0 1853390.0 1911310.0 1786200.0 2478170.0 1968220.0 False True 1771301.88611548 1895363.899486189 1915901.961958913 1808361.8254202616 1847040.528442374 1725269.5117107735 1818852.6333867577 1919495.314139818 1867458.2092766985 1842606.51452208 0.9613023030990996 1.0286319322917366 1.0397781332363538 0.9814150830185789 1.0024063813328283 0.9363200977058629 0.9871085438219654 1.0417282794843916 1.0134872500225933 1.0 20.813316588118713 1.7567826050123052 24.999999999870575 1.022179375614026 0.9922860861243604 0.14663380146128857 0.02977540182684351 13.821849815711277 18982.423368900818 0.014431318979181911 0.008003207488983687 57.119264293497494 -1.7567826050123052 -0.02989328948966563 ADLIPYQDS(ph)PEGPDHSSASSGVPNPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADLIPYQDSPEGPDHSSASSGVPNPPK 27 0 Q8WUA4;H0Y4Q6;H7C318 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 ADLIPYQDS(1)PEGPDHSSASSGVPNPPK;ADLIPYQDS(1)PEGPDHSSASSGVPNPPK 236.49 3.180099999999999e-45 936030000.0 569520.0 766140.0 759950.0 780050.0 779190.0 947320.0 953420.0 883640.0 993700.0 1026850.0 True False 566453.7675996207 791640.5067585907 866944.3543961857 878804.2500196709 878415.2278790382 881833.9981514137 907299.4321819072 949581.7038330019 748815.9498978099 961315.5538694864 0.5892485202382627 0.823497033385219 0.9018311946650215 0.9141683461609551 0.913763669320903 0.9173200148503333 0.9438102073037791 0.9877939663107983 0.7789491669865078 1.0 19.87465055088475 4.988064129067213 1.330220131057752 0.9273837486241806 0.2590974565529763 0.7601799298827095 0.056289600993308986 1.0326286137178318 1.051145818532632 0.014751370559335465 1.08922103290638 97289.08727999678 -4.988064129067213 -0.6682862920712043 ADLLLSTQPGREEGSPLELER ddPTM_BT-474_Trastuzumab_2h_R1 4 ADLLLSTQPGREEGSPLELER 21 1 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 ;;; 181.26 4.6468e-17 1678030000.0 488220.0 779130.0 873510.0 847560.0 882420.0 877060.0 743670.0 645700.0 886670.0 856220.0 False True 485591.4777663415 805062.8710559685 996492.6153149726 954861.0090977162 994790.9564868895 816430.9065771655 707695.8410047188 693885.4127981635 668162.0592692863 801575.306553177 0.6057964533044495 1.0043508881502203 1.2431678061540494 1.1912305697186172 1.2410449128785563 1.0185330060725903 0.8828812904028374 0.8656521815547354 0.8335611810977863 1.0 19.61247853977881 2.327120303848666 4.2334560626178614 0.8818175239877515 1.076567950629256 0.15170108832790685 0.17662073667749656 0.36913634357338115 12.235345854168827 0.06737112436254063 0.054775195799132426 212.38327030976387 -2.327120303848666 0.19475042664150455 ADLNQGIGEPQS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADLNQGIGEPQSPSR 15 0 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 ADLNQGIGEPQS(0.992)PS(0.008)R;ADLNQGIGEPQS(0.997)PS(0.003)R;ADLNQGIGEPQS(0.999)PS(0.001)R 331.82 7.103399999999997e-69 1146910000.0 995290.0 906910.0 838520.0 797300.0 837900.0 1022970.0 1011990.0 869860.0 1078220.0 1096650.0 True False 989931.4692271153 937095.951111327 956576.3274535042 898238.09825099 944601.5983776047 952254.49171236 963036.177522778 934773.370259579 812507.1284077852 1026660.8581106996 0.964224418810341 0.9127609606504399 0.9317354605432532 0.8749121885331852 0.9200716974015125 0.9275258564592936 0.9380275578977404 0.9104986937748699 0.7914075246844335 1.0 19.9695282571869 5.613821815281995 1.3042719386703765 0.9091772198369718 1.3131331050677453 0.0879125150589185 0.05008563542951423 28.531937423230925 7.479326304985582 0.0129644131648056 26.435205308719798 410981.06694624835 -5.613821815281995 0.4039558852307735 ADLSIPDLHEIVTEELEER ddPTM_BT-474_Trastuzumab_2h_R1 4 ADLSIPDLHEIVTEELEER 19 0 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 0 ;;; 272.4 2.3781e-39 238110000.0 188660.0 240537.0 203488.0 209113.0 212831.0 239337.0 221951.0 192224.0 237095.0 235786.0 False True 187644.27552209652 248543.1286373132 232137.34165059685 235586.6843591608 239933.76630183068 222792.19652869718 211214.38219484195 206568.73097369386 178666.1141602307 220737.93561344914 0.8500771514448453 1.1259647234925483 1.0516422607897813 1.0672686763353374 1.0869620830467346 1.009306333818603 0.9568558372527113 0.9358098344066783 0.8094037559230708 1.0 17.751975064263988 2.0989218730166153 1.870193357299818 0.9070186314493448 1.043847605077518 0.3005602948762851 0.08123770414583796 0.3824217038719011 2.568980514650135 0.04322133900992889 0.02408713137972182 125.58040317288084 -2.0989218730166153 0.13682897362817326 ADPAFGLESSGIAGTTSDEPERIEESGNDEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADPAFGLESSGIAGTTSDEPERIEESGNDEAR 32 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 137.5 1.6726e-08 375970000.0 19104.0 27041.0 24227.0 28287.0 26283.0 21675.0 32621.0 26594.0 25074.0 27374.0 False True 19001.146186653947 27941.043338370302 27637.951015141 31868.13129966856 29629.984258453955 20176.6582674618 31042.997605678487 28578.57932159575 18894.84867438631 25626.967883939502 0.7414512037751458 1.0902984490756333 1.0784713642405501 1.2435388940273504 1.15620327744755 0.7873213233355856 1.2113410274000158 1.1151759915969626 0.7373033267126295 1.0 14.645375172358472 1.253989862759214 24.98726134582161 0.8686515911777007 1.0661566842168175 0.15838158856624207 0.1677725701301899 339.91124989104713 550482.2007475971 0.11028350788176627 0.03994838264581067 17.94691734901257 -1.253989862759214 0.19750509303911679 ADPSLLGFSVNASS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 1 ADPSLLGFSVNASSER 16 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 ADPSLLGFSVNAS(0.378)S(0.622)ER 119.56 0.00019415 61273000.0 37908.0 30594.0 30071.0 34081.0 36613.0 38257.0 36112.0 37338.0 42558.0 33570.0 True False 37703.90753997473 31612.302795536445 34304.7354181824 38395.65110559635 41275.44852774701 35612.38363729118 34365.12459876342 40124.351158522295 32070.151147983284 31427.533859277042 1.1997093920509763 1.0058792057018136 1.09155034473238 1.2217201412468577 1.313353084354819 1.1331587071627265 1.093471882096763 1.276726049781283 1.0204475887794342 1.0 14.939741446831436 5.078520834043925 21.042388828733298 1.1462865232504715 3.600196682254995 0.014859439651439321 0.10654722532904852 4067.3588560195985 1026227.3104988245 0.024743505929236433 27672.780807559964 119817.66009297287 -5.078520834043925 2.453910159004524 ADQDRLDLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ADQDRLDLEER 11 1 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 ; 153.81 2.9458e-05 968050000.0 838430.0 1547310.0 1433950.0 1666990.0 1550830.0 1258570.0 1305970.0 1047840.0 1036510.0 1333240.0 False True 833915.9860383304 1598811.2779813544 1635837.6958831667 1878030.763079664 1748319.008010431 1171568.0182551052 1242795.24181012 1126035.1416237087 781075.9990224205 1248151.481755808 0.6681208156442986 1.2809433000329926 1.3106083033943847 1.5046497084134276 1.4007266213801421 0.9386424928222888 0.9957086619501078 0.9021622439927603 0.6257862210151448 1.0 20.25136160666191 2.629604682387567 5.650423496152168 0.8910423824245229 1.2541544772183282 0.35479312514646955 0.229290056624089 0.2618217797915022 11.549896462009052 0.07709416657724269 0.07248142944633734 426.1914004228073 -2.629604682387567 0.36311209479380524 ADQEEQIHPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADQEEQIHPR 10 0 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;; 250.72 2.2119000000000001e-13 3659920000.0 2017520.0 2280190.0 2170900.0 2229710.0 2080910.0 2386260.0 2444590.0 2019840.0 2521200.0 2291590.0 False True 2006657.8964875431 2356084.74574604 2476543.8501989385 2511991.057382685 2345901.5539801177 2221303.462851832 2326335.8424593247 2170570.717339699 1899884.0423491574 2145338.7642710954 0.9353571239688708 1.0982343604584741 1.154383583350005 1.170906478369706 1.0934877013594475 1.0354091856474457 1.0843675978836496 1.011761290798834 0.8855869636955289 1.0 21.032774046860023 1.548152066074886 3.2148075382878525 0.9424411625636232 1.0873463457087174 0.40813291790309125 0.06670124012630375 0.20052220584814007 4.622201721251295 0.046390703817200056 0.01804192335777805 35.330685679313696 -1.548152066074886 0.14490518314509415 ADQELLMYSHDNIICGITSVAFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADQELLMYSHDNIICGITSVAFSR 24 0 P62879;E7EP32;P62879-2 P62879 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 0 ;; 282.6 2.4222e-52 744493000.0 272853.0 315756.0 381702.0 339593.0 366265.0 495217.0 352256.0 314225.0 438052.0 367616.0 False True 271383.989764818 326265.74758146744 435442.3237867404 382585.43898074573 412906.67672726285 460983.81440542743 335216.0315314029 337674.06510221906 330099.9541960707 344154.432148108 0.788552941395876 0.9480213447928454 1.2652526979496994 1.1116679119683655 1.1997714925535727 1.3394678997103298 0.9740279369325151 0.9811701769887418 0.9591622927407516 1.0 18.392696564069574 -1.2411054080892776 8.465721327261608 0.9999999732294174 1.0688731328391383 0.012753602988074264 0.1589530394925073 8.133867227133811e-08 7.239901638859679e-09 0.16130067390451924 0.03801891927946839 0.057397713468095024 1.2411054080892776 0.06887315960972096 ADQLDYENFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ADQLDYENFR 10 0 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 THOC2 THO complex subunit 2 0 ; 166.97 1.2527e-05 327690000.0 378910.0 431510.0 429020.0 406790.0 401710.0 437270.0 423270.0 389740.0 451140.0 443970.0 False True 376869.9906608583 445872.5494966964 489422.2868913115 458289.572290882 452865.3873782877 407042.5541228619 402794.81305157806 418824.37785961945 339962.5919662857 415635.45449815935 0.9067320571001174 1.072749075352692 1.1775277628378522 1.102623867456696 1.0895735252544323 0.9793258725108699 0.9691060006849388 1.0076724045722 0.81793453442695 1.0 18.66495919857069 2.6534624863883667 3.975359519601709 0.9581115929829516 1.0779468768125784 0.33989953972024856 0.08007307352241148 0.28322405912087595 8.338442998962266 0.02725466070037767 0.02578143114265166 450.259087001493 -2.6534624863883667 0.11983528382962683 ADRDESSPYAAMLAAQDVAQR ddPTM_BT-474_Trastuzumab_2h_R1 14 ADRDESSPYAAMLAAQDVAQR 21 1 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ;;;;;;;;;;;;; 335.24 2.7562e-80 21769830000.0 9013079.0 10720680.0 10286575.0 10529150.0 9684970.0 10539670.0 10452890.0 9956380.0 11739800.0 10688760.0 False True 8964553.584111227 11077511.353012085 11734835.347487278 11862139.310421929 10918293.522185389 9811087.420614485 9947243.776782462 10699375.633073233 8846683.595260452 10006594.185692161 0.8958646086526736 1.1070211450016796 1.1727102278481751 1.1854322350138773 1.0911098541196778 0.9804622070756881 0.9940688702061526 1.0692324915475877 0.8840853772115395 1.0 23.25444769058344 2.7758902395561713 6.8727225138712065 0.9970918522863815 1.1015924398378576 0.2648163797613471 0.08532162117744349 0.32384674312373724 47.417493512865725 0.027002205716900526 0.028343161073770672 596.8844152728548 -2.7758902395561713 0.10450058755147607 ADRDQS(ph)PFSK ddPTM_BT-474_Trastuzumab_2h_R1 7 ADRDQSPFSK 10 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 ADRDQS(0.805)PFS(0.195)K;ADRDQS(0.999)PFS(0.001)K;ADRDQS(0.818)PFS(0.182)K;ADRDQS(1)PFSK;ADRDQS(0.95)PFS(0.05)K;ADRDQS(0.976)PFS(0.024)K;ADRDQS(0.991)PFS(0.009)K 149.41 6.154e-05 17176220000.0 11622980.0 11215071.0 10218152.0 9748082.0 9560080.0 12089710.0 12374970.0 11585740.0 16001400.0 12021330.0 True False 11560403.167114474 11588357.858581422 11656778.98383066 10982188.181706643 10777499.520966427 11253976.803816184 11776345.424123812 12450326.749995656 12058069.377774775 11254118.427421581 1.0272153471343082 1.0296992992667857 1.0357789514128415 0.9758372681548865 0.9576493788004014 0.9999874158419151 1.0464031900917075 1.1062907175083048 1.071436155176251 1.0 23.423949714322173 2.0915253489405248 4.311492192753913 1.0722100814472224 1.0037522880165783 0.3393772579090397 0.0340687430198983 0.20107047841015546 6.848665309685024 0.014107333280414905 0.010005522033141515 123.4597374161525 -2.0915253489405248 -0.06845779343064406 ADRDQSPFS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 2 ADRDQSPFSK 10 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 ADRDQS(0.164)PFS(0.836)K;ADRDQS(0.293)PFS(0.707)K 179.98 5.3844000000000005e-06 3679690000.0 5259800.0 4586400.0 4332600.0 4371900.0 4320000.0 5225300.0 5381200.0 4709200.0 6859000.0 5148300.0 True False 5231481.82121871 4739055.551462653 4942592.420365711 4925382.091738994 4870126.393353917 4864087.310033131 5120890.797819714 5060624.416833069 5168691.355891192 4819731.086318617 1.0854302299289886 0.9832614033000782 1.025491325521428 1.0219205187028546 1.0104560412464407 1.0092030494897164 1.0624847540469582 1.0499806578832285 1.0724024355971107 1.0 22.200521223817304 2.2391711672130756 24.99968339206038 1.050771255500283 1.0203825899058154 0.11905753064635272 0.03007427772393293 25.348147702414604 1038008.8389154593 0.010006772910720217 0.007907378024246929 173.44874715282518 -2.2391711672130756 -0.030388665594467623 ADRGEAERGS(ph)GGS(ph)S(ph)GDELREDDEPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADRGEAERGSGGSSGDELREDDEPVK 26 3 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 3 ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK;ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK 106.37 0.0058892 1193350000.0 676840.0 781020.0 542000.0 682840.0 749300.0 982160.0 911620.0 839030.0 1254800.0 832570.0 True False 673195.9686439934 807015.7785634405 618308.8888515466 769287.4739868378 844718.913550948 914265.5909559531 867521.457873413 901642.6791080108 945571.3534585601 779434.6698009616 0.8636977475173158 1.0353860430272137 0.7932786579912329 0.9869813389020595 1.0837584550436505 1.1729855321799096 1.113013689902895 1.1567905740429234 1.2131502357984967 1.0 19.572068579458623 3.2682956142556 2.6899357669747532 1.1391481044307956 0.9089893890616847 0.6348961959302647 0.07759272728737975 0.1563800556565367 2.3145282995451106 0.021672635344664484 0.029410734487898958 1854.7937092069164 -3.2682956142556 -0.23015871536911092 ADS(ph)GEEENTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADSGEEENTK 10 0 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 ADS(1)GEEENTK;ADS(1)GEEENTK 142.51 3.7366e-05 339580000.0 646540.0 414600.0 359980.0 356150.0 369920.0 401860.0 460850.0 482460.0 764890.0 541680.0 True False 643059.1004773475 428399.71036900766 410662.05499774916 401238.55348311795 417027.11931237974 374080.36407668755 438556.9248820374 518463.6150822401 576393.1085008903 507109.51864441985 1.2680872214671524 0.8447873577963684 0.809809399940886 0.7912266260662767 0.8223610561031394 0.7376717460888147 0.8648169848090529 1.0223898310332873 1.136624510700718 1.0 18.951937829046877 1.654916021791235 3.8632325310417706 1.0705744641819788 0.8621082808933412 0.24455921867676234 0.14128135739855635 0.23403662764452543 8.198540861043304 0.08196230933101341 0.037343691581903316 45.17685788064217 -1.654916021791235 -0.20846618328863753 ADS(ph)LLAVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADSLLAVVK 9 0 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 ADS(1)LLAVVK;ADS(1)LLAVVK 126.19 0.00050387 90496000.0 277319.0 208971.0 181444.0 174114.0 154110.0 206125.0 216757.0 212679.0 333260.0 245144.0 True False 275825.94531703746 215926.47340936272 206989.7380604801 196156.81454768928 173734.99501846582 191876.0639160584 206271.63581784916 228550.18694207928 251132.5384552121 229498.70004166276 1.2018627785994629 0.9408614226144367 0.9019211787382829 0.8547186302670967 0.757019516829186 0.8360660164141478 0.8987921752079773 0.9958670219072645 1.0942656250759677 1.0 17.80812645618588 1.5944000690594586 3.605915826412804 1.0470065711713987 0.90258215093677 0.19221315736175526 0.11122062930437988 0.29724345836780985 8.979831480406734 0.07244660153693502 0.03074246222026677 39.300680383593516 -1.5944000690594586 -0.14442442023462876 ADS(ph)PHVSGSEADVASLAPVDSSFSLLSVSHALYDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ADSPHVSGSEADVASLAPVDSSFSLLSVSHALYDSR 36 0 A0A499FJD3;A0A3B3ISA1;Q96S15 A0A499FJD3 WDR24 WD repeat-containing protein 24 1 ADS(1)PHVSGSEADVASLAPVDSSFSLLSVSHALYDSR;ADS(0.999)PHVSGSEADVASLAPVDSSFSLLSVSHALYDSR;ADS(0.999)PHVSGSEADVASLAPVDSSFSLLSVSHALYDSR;ADS(0.981)PHVS(0.009)GS(0.009)EADVASLAPVDSSFSLLSVSHALYDSR 224.8 5.2396999999999994e-39 291441000.0 81596.1 126056.0 136293.0 159921.3 149912.3 162118.0 168392.0 167266.0 162144.0 178427.0 True False 81156.79566377889 130251.69775753883 155481.869720007 180167.32018289948 169002.7428051832 150911.16424472313 160246.23564009095 179748.23827953803 122185.78381828574 167039.63610095993 0.4858535229011583 0.7797652149985156 0.9308082401833817 1.0785902339610287 1.0117523406422937 0.9034452407062917 0.9593306078758277 1.0760813569475027 0.7314777897650339 1.0 17.349830948521948 4.630123306505096 1.8810419432320447 0.975387725633111 0.39557595152452024 0.708521274701388 0.09414165931557196 0.3218005664783199 1.4157095608684536 0.023832943599293437 0.3028502411148226 42670.06520411478 -4.630123306505096 -0.5798117741085909 down ADS(ph)PVNGLPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADSPVNGLPK 10 0 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 ADS(1)PVNGLPK;ADS(1)PVNGLPK;ADS(1)PVNGLPK 137.95 8.149999999999999e-05 1582850000.0 3896500.0 3706380.0 3374290.0 3568010.0 3188320.0 4047390.0 3932330.0 4015090.0 5344100.0 4511960.0 True False 3875521.676941851 3829744.6177459797 3849360.7021455467 4019719.7001636885 3594333.6533468 3767603.4558312437 3742108.1749406084 4314716.404013909 4027118.1622711914 4224002.849916704 0.9174997779696752 0.9066624133128842 0.9113063695545222 0.9516375445255574 0.8509306885097577 0.8919509739217008 0.8859151633892486 1.021475732219024 0.9533890731988036 1.0 22.01017937740106 1.7488616298846995 14.330968746086102 0.9901541550989327 0.9023150787438078 0.6711461471825226 0.02865454832139571 0.09054680194603927 118.64749344645173 0.01321519553486925 0.007285084647949686 56.086924959105495 -1.7488616298846995 -0.08783907635512489 ADSEWR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADSEWR 6 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 100.82 0.086601 1654100000.0 1570400.0 1846700.0 1546800.0 1592100.0 1571200.0 1653100.0 1637000.0 1394300.0 1845400.0 1714100.0 False True 1561945.1408878411 1908166.293146276 1764575.9949733806 1793659.696758311 1771283.006767981 1538825.0879788268 1557812.056052718 1498349.7461119418 1390625.8970931026 1604704.670485158 0.9733536454502939 1.1891074589876847 1.0996266337530431 1.1177506551507856 1.1038062263709 0.9589459769650864 0.9707780407853723 0.933723054260781 0.8665930389999227 1.0 20.61387637780506 2.704314757950439 4.00843250773462 0.9409570735827059 1.1041576962326063 0.6209341664531878 0.05879738203832713 0.13572598881448497 4.8796340696357685 0.018458249814034624 0.017936654369238674 506.19139482979045 -2.704314757950439 0.16320062264990043 ADSGPTQPPLSLS(ph)PAPETK ddPTM_BT-474_Trastuzumab_2h_R1 8 ADSGPTQPPLSLSPAPETK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLS(0.087)LS(0.913)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK 401.92 1.945299999999999e-147 17765580000.0 5755077.0 5191475.0 4830639.0 4555962.0 4496040.0 5461449.0 5377132.0 4631986.0 6146580.0 5064883.0 True False 5724092.304881159 5364270.107062088 5510750.982533112 5132746.322066691 5068584.043883087 5083911.88549808 5117019.582520988 4977648.316068321 4631837.718952274 4741637.830675498 1.2071972827299846 1.1313116477092664 1.162204111600832 1.0824838389935563 1.068952169035865 1.0721847739210024 1.0791671074954312 1.0497740430249605 0.9768434208507272 1.0 22.176954042384004 7.999999999999999 0.18472223804445975 0.9806252326455557 1.9526935523956082 0.8564868093067193 0.025021149923404425 19.49506005865804 0.2232142017864372 0.05325158701194712 5.365442402269584 99999999.99999979 -7.999999999999999 0.9720683197500525 ADSPSIDYAELLQHFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADSPSIDYAELLQHFEK 17 0 Q08AM6;Q08AM6-2 Q08AM6 VAC14 Protein VAC14 homolog 0 ;; 238.81 2.9160000000000004e-20 340947000.0 443860.0 455493.0 404285.0 431366.0 391424.0 493160.0 494350.0 439610.0 574250.0 512830.0 False True 441470.3070774823 470653.80915366655 461204.8138917856 485976.89137104794 441269.52624818636 459069.00997376937 470436.4018996091 472415.9304943484 432733.78205576865 480100.75034414727 0.9195367988094711 0.9803230026536952 0.9606417268899984 1.012239391466663 0.9191185931950204 0.9561930691520439 0.9798701659232764 0.9839933183935035 0.9013395245593245 1.0 18.872977665207188 -1.776234137870758 4.930819884167578 1.0030695473320115 0.9610575305930613 0.12165869394812101 0.03308115576381232 0.0011338770243607729 5.145646052284686e-05 0.03253544274650359 0.007115972747755762 0.016740401202217613 1.776234137870758 -0.042012016738950164 ADTEGKS(ph)PSHSSSNRPFTPPTSTGGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ADTEGKSPSHSSSNRPFTPPTSTGGSK 27 2 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 ADT(0.204)EGKS(0.677)PS(0.114)HS(0.004)SSNRPFTPPTSTGGSK 142.68 1.0139e-07 489240000.0 85562.0 101080.0 106650.0 111530.0 119880.0 151680.0 153580.0 148330.0 176260.0 169440.0 True False 85101.34369883193 104444.3866958497 121665.39298158218 125649.68656457154 135146.00741557113 141194.71861631388 146150.74866742588 159399.13780447838 132823.08476299467 158626.19413511784 0.536489853790116 0.658430893241276 0.7669943393960997 0.7921118403530699 0.8519778725854932 0.8901097286368995 0.9213531817004613 1.0048727366471526 0.8373338683890753 1.0 17.275271499126223 5.291970371443089 0.3867749039551202 0.9716558595673129 6.815257389098035e-22 0.899212286393917 0.04408189829370465 2.4479012362231427 0.20969645926840996 0.035103967908260245 1.2011875513538433 195871.1041227388 -5.291970371443089 -0.9716558595673129 ADTLDPALLRPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ADTLDPALLRPGR 13 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;;; 148.68 3.8965e-05 4155810000.0 3928300.0 4775820.0 4189390.0 4374460.0 4161150.0 4511640.0 4394280.0 4130950.0 5010000.0 4470720.0 False True 3907150.4692751635 4934780.281655845 4779219.697169335 4928266.187476511 4691047.787431631 4199760.946058196 4181711.888620235 4439222.465539061 3775352.6305605583 4185394.8220240353 0.9335201660582372 1.1790477342038215 1.1418802527351837 1.177491347182684 1.1208136835136295 1.00343244177552 0.9991200511396392 1.060646045190135 0.9020302244113776 1.0 21.996932292675368 2.737723668734927 16.563713839440286 1.0025539803628918 1.1198159433692603 0.3772477332070133 0.074516846233421 0.7678323852491362 15145.731223377106 0.02295306115052851 0.022867745786891495 546.6680203330221 -2.737723668734927 0.11726196300636849 ADTLTLEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ADTLTLEER 9 0 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4;K7EL40 Q9UHD8 SEPT9 Septin-9 0 118.41 0.0040361 0.0 110290.0 140250.0 112090.0 101890.0 105320.0 140510.0 139350.0 130200.0 179480.0 124920.0 False True 109696.21089437098 144918.13646708452 127871.2976962543 114789.2635529828 118731.8777194524 130796.87442496241 132609.10813130497 139916.18514220364 135249.5589087843 116947.49865060735 0.9379953582598604 1.239172604281536 1.0934077186061322 0.9815452649904681 1.0152579498444518 1.1184238733975107 1.133920003945431 1.1964016909862911 1.1564980907617035 1.0 16.83550147915446 2.534101349464825 5.570773378097267 1.1423600906395073 1.061986847930704 0.10459850713067265 0.08938170441452478 0.4129353020810007 27.501268729153086 0.029488625006017975 0.027294283159900838 342.0592581213242 -2.534101349464825 -0.0803732427088033 ADTQTYQPYNK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADTQTYQPYNK 11 0 P84090 P84090 ERH Enhancer of rudimentary homolog 0 ;; 227.27 9.6058e-12 339710000.0 356690.0 399840.0 341720.0 331443.0 365676.0 391680.0 382240.0 369190.0 445590.0 422760.0 False True 354769.62067198416 413148.4326916159 389831.2057165138 373403.649816384 412242.67106853926 364604.0835155448 363749.59090139886 396740.83250883356 335780.3151000953 395779.0948569546 0.8963829198715197 1.043886445899673 0.9849716945191597 0.9434648132472543 1.041597892424144 0.9212312834444242 0.9190722694256197 1.002429985980504 0.8484033630463871 1.0 18.594335885350006 2.687683426655716 24.999713562879855 0.9421163386053868 0.9835132503580157 0.12522094065771738 0.05740561601176648 793.5332978431778 389920.60189809604 0.017608987539969933 0.01660194313966853 487.17324200997354 -2.687683426655716 0.04139691175262894 ADTQTYQPYNKDWIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADTQTYQPYNKDWIK 15 1 P84090 P84090 ERH Enhancer of rudimentary homolog 0 ; 224.64 1.0084e-12 6017300000.0 2964460.0 3732100.0 3644160.0 3828260.0 3943330.0 4222600.0 4625000.0 3886810.0 5857100.0 4255600.0 False True 2948499.676742466 3856320.6923979074 4157226.0523934513 4312917.323479654 4445489.70155192 3930701.600931225 4401271.080784247 4176863.4990212657 4413696.186119007 3984003.9645975344 0.7400845237462822 0.9679510177865684 1.043479396440163 1.0825584918601723 1.115834658061392 0.9866209059679754 1.1047356177088707 1.0484084695039237 1.1078543659443572 1.0 21.92578765239843 4.781951380013616 1.7360062757700572 1.0659791576217574 0.603924844506153 0.846693932703476 0.04142408616104395 0.33729530956991627 0.9269493677646036 0.010009156931155118 0.2667693676982211 60527.31096338995 -4.781951380013616 -0.4620543131156044 ADTSS(ph)AENILYTVGLWEAPR ddPTM_BT-474_Trastuzumab_2h_R1 6 ADTSSAENILYTVGLWEAPR 20 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 ADT(0.003)S(0.036)S(0.962)AENILYTVGLWEAPR;ADTS(0.002)S(0.998)AENILYTVGLWEAPR;ADTSS(1)AENILYTVGLWEAPR;ADT(0.001)S(0.007)S(0.993)AENILYTVGLWEAPR;ADT(0.003)S(0.019)S(0.978)AENILYTVGLWEAPR;ADTS(0.033)S(0.967)AENILYTVGLWEAPR 359.0 1.6339999999999994e-95 2902230000.0 1687450.0 1839780.0 1617940.0 1760630.0 1474240.0 1880250.0 1794510.0 1698110.0 2117730.0 1955190.0 True False 1678364.9566933215 1901015.9651295035 1845731.8886134152 1983525.5774785406 1661975.7254949266 1750272.7431324148 1707702.6956060869 1824831.5910278617 1595843.817628145 1830408.1002776239 0.9169348389786728 1.0385749302798486 1.0083717878725882 1.083652097681218 0.9079809716985242 0.9562199505492492 0.932962815968239 0.9969534065933623 0.8718513742296585 1.0 20.80373391106169 3.2211540592662797 24.999929946302217 0.9475433360724288 1.0135391507798142 0.2821773236854306 0.05260904394398899 311.2579547257621 447038.8404142921 0.014583468905771614 0.01746824993458265 1664.0028250128719 -3.2211540592662797 0.06599581470738536 ADVFHAYLSLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADVFHAYLSLLK 12 0 Q86VP6;Q86VP6-2;A0A0C4DGH5;H0YH27;Q86VP6-3 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 216.03 4.0028e-11 545630000.0 1661180.0 2058300.0 2207900.0 1629430.0 1041860.0 1632670.0 1987320.0 1434690.0 3296800.0 1899050.0 False True 1652236.3914544478 2126809.271231377 2518753.128589171 1835715.6709307786 1174534.6954119697 1519807.36579178 1891185.7393003586 1541753.8530082037 2484347.8148566973 1777851.003141497 0.9293446911664218 1.1962809411324482 1.4167402803376017 1.0325475350223576 0.660648554539466 0.8548564323479588 1.0637481633492327 0.8672008229507956 1.397388088465685 1.0 20.76170299020946 3.4887208206849873 24.857247563089707 0.9518001311601503 1.1893888951045888 0.15965244290119684 0.20834771942315664 806.7047375223975 1728723.4570742724 0.05632833850490169 0.08207718300454962 3081.2066087139597 -3.4887208206849873 0.2375887639444385 ADVQKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADVQKR 6 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 99.919 0.06133200000000001 139940000.0 353000.0 437040.0 371180.0 391420.0 405040.0 259910.0 421410.0 423570.0 681120.0 518610.0 False True 351099.48722198664 451586.61220374116 423438.91764560406 440973.73186680296 456619.44313983154 241943.0334623298 401024.7883574682 455178.94424487866 513267.1025404005 485511.86579564057 0.7231532573289771 0.9301247693785942 0.8721494724988575 0.908265611890144 0.9404908001404639 0.4983256857499078 0.8259834962020594 0.9375238306461299 1.0571669586268002 1.0 18.88914702963913 1.5645863020829873 3.2916052561568785 1.02297660480388 0.8176317193126668 0.333476403250346 0.12332432997780235 0.2546085116394046 6.28075768004993 0.08461566628485895 0.03380180623907106 36.69326032695714 -1.5645863020829873 -0.2053448854912132 ADVT(ph)PPPDGSTTHNLEVSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ADVTPPPDGSTTHNLEVSPK 20 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 ADVT(0.827)PPPDGS(0.131)T(0.03)T(0.012)HNLEVSPK;ADVT(0.999)PPPDGS(0.001)TTHNLEVSPK;ADVT(1)PPPDGSTTHNLEVSPK 175.42 7.226e-12 725780000.0 788760.0 808430.0 790320.0 724690.0 725280.0 910100.0 911490.0 863520.0 1010020.0 905350.0 True False 784513.4037994746 835338.1038437447 901590.186415414 816435.6796958602 817640.1089286415 847186.92914496 867397.7464700614 927960.2472657119 761114.104574605 847569.7878908695 0.9256033131521745 0.9855685228262292 1.0637356348660931 0.9632666139829208 0.964687652403578 0.9995482864639829 1.0233938949482055 1.0948481889318986 0.8979957939140272 1.0 19.692972637374776 2.4151536302589625 4.455805244393016 1.0208959401175566 0.9842685696379823 0.0023918727699573372 0.056225059955975314 0.5790202831002729 23.278084761136725 0.020223671097877264 0.016909528781943423 260.10795238518887 -2.4151536302589625 -0.03662737047957432 ADVVELLLSHADCDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADVVELLLSHADCDR 15 0 Q9UK73 Q9UK73 FEM1B Protein fem-1 homolog B 0 143.38 4.4224e-06 14446000.0 15657.0 20421.0 16348.0 19615.0 18774.0 19297.0 17922.0 15321.0 22278.0 19487.0 False True 15572.704451656238 21100.700640244828 18649.656300636696 22098.256988828743 21164.757617783907 17963.043810251922 17055.04439131143 16464.33081846161 16787.885409905797 18243.32297633994 0.8536111799288282 1.1566259429606474 1.0222729885790947 1.2113065704909314 1.1601371989759115 0.9846366165609458 0.9348650140892858 0.9024853005022423 0.9202208080007287 1.0 14.155080916335475 2.524685416442558 4.662959770001839 0.9307860466561689 1.0887544984464437 0.3308307796143186 0.09503494403918622 0.21956722954758143 10.541608534277069 0.031477990499804036 0.028684407996486368 334.72289298527653 -2.524685416442558 0.15796845179027474 ADVVPQQADPEFPRAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 ADVVPQQADPEFPRASPR 18 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR 202.46 7.8144e-16 2870070000.0 609395.0 744050.0 663110.0 714630.0 709570.0 683050.0 722730.0 688780.0 779520.0 760170.0 True False 606114.0850301501 768815.2544622769 756470.1241445553 805102.0847273351 799929.5335491059 635832.3612267488 687768.7888032865 740180.2611539708 587417.7410328471 711655.2997857197 0.8516961585372186 1.0803197203671049 1.0629726559646635 1.1313090550576275 1.1240407171701885 0.8934555274417245 0.9664352798473848 1.040082553136104 0.8254245295576654 1.0 19.440819095253836 2.7373387206019 24.999813631564187 0.9570029440074205 1.0569786853081227 0.24289017145528335 0.09106869139753551 173.1134680517271 3541820.8554468444 0.028946694064235338 0.028732336581972984 546.1836816960401 -2.7373387206019 0.09997574130070219 ADWLSHYWMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ADWLSHYWMPK 11 0 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ; 106.29 0.0023512 908000000.0 1405940.0 1535110.0 1643160.0 1302690.0 1144250.0 1325450.0 1420580.0 1201610.0 2377700.0 1395210.0 False True 1398370.5752546191 1586205.2083564107 1874502.6453972468 1467610.4204321853 1289963.4549988925 1233824.761273691 1351861.1182574034 1291280.2398519467 1791747.694547672 1306166.5033006244 1.0705913616074207 1.2143974021291628 1.4351176826694472 1.1236013300935213 0.9875949595547064 0.9446152218387709 1.0349837596059237 0.9886030889545393 1.3717605604032914 1.0 20.316907385178556 3.4847337769470443 24.009068943777823 1.0442694558631045 1.2444529888847142 0.26087219543592344 0.1389324911357864 257.15471946968887 811038.3210205715 0.03776246666146707 0.053466971707448796 3053.049016663316 -3.4847337769470443 0.20018353302160974 ADWWTNTAHYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADWWTNTAHYNR 12 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 150.44 6.8122e-05 399160000.0 535830.0 585230.0 526600.0 592560.0 530970.0 509440.0 552050.0 472790.0 695480.0 556010.0 False True 532945.15081631 604709.0267709945 600740.7027107473 667578.0352434542 598585.882194244 474223.61189276783 525345.2324642041 508071.9905789748 524088.2729545422 520524.96577589 1.0238608824879447 1.1617291513954966 1.1541054554708792 1.2825091573626408 1.1499657491010005 0.9110487355508381 1.0092603948037902 0.9760761231147618 1.006845602829714 1.0 18.98960783515131 2.7870501707246156 9.110064721136224 0.9813799887728726 1.1621991959926832 0.649610025341585 0.06369200820496466 0.27981892975123074 50.77927880437136 0.01970312076657103 0.020863541674488232 612.4211359749602 -2.7870501707246156 0.1808192072198106 ADYDTLSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ADYDTLSLR 9 0 Q9Y446;Q9Y446-2;E9PQ15;E9PK71;E9PKC4;E9PRW6;E9PJR7 Q9Y446 PKP3 Plakophilin-3 0 88.37 0.026575 0.0 181200.0 197600.0 187470.0 155170.0 163090.0 185460.0 192140.0 170070.0 210890.0 195140.0 False True 180224.43933321236 204176.99654827768 213864.146481549 174814.5060900615 183858.54478983572 172639.58672588065 182845.4541539212 182761.4869979615 158918.98528122055 182685.9981322405 0.9865257391141368 1.1176390015423106 1.1706652325195697 0.9569124502005837 1.0064183717941342 0.9450072172521532 1.0008728420530908 1.000413216483435 0.869902383904563 1.0 17.479006538072245 3.7194561689917487 24.90786374174408 0.9727825839285419 1.0942128957161943 0.4896035046671524 0.057465300405017156 610.3875578156188 795806.9528824876 0.014963816794421082 0.023225596876338937 5241.506986255944 -3.7194561689917487 0.1214303117876524 ADYEIASK ddPTM_BT-474_Trastuzumab_2h_R1 4 ADYEIASK 8 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;B8ZZ12;Q9NQ29-3;Q9NQ29;Q9NQ29-2;A8MYV2 Q9Y383;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 ;;; 147.29 0.0012555 589295000.0 797070.0 837580.0 751760.0 722750.0 700800.0 860570.0 842660.0 785650.0 1080370.0 886470.0 False True 792778.6636828023 865458.3439721976 857601.2735849421 814250.0758947722 790042.7260329686 801080.8214638808 801897.3165261952 844279.1924498638 814127.2897163092 829894.7256548492 0.9552761804302835 1.0428531682609334 1.0333856175652043 0.9811486333429433 0.951979451863085 0.9652800490228058 0.9662639028021753 1.0173328813286096 0.9810006794222023 1.0 19.66256881281398 5.090873132016853 15.471336602093308 0.9927886117052664 7.774923549824461e-05 0.13633459281430227 0.028651553547675988 3215515.169296718 7246959.20038925 0.007438041824508746 107969233.58500703 123274.46659190393 -5.090873132016853 -0.9927108624697683 AEADKNDK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEADKNDK 8 1 P08238;Q58FF7;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha 0 ;; 107.15 0.0037006 1271880000.0 1063910.0 788000.0 694090.0 782150.0 872160.0 2284070.0 940900.0 904570.0 1363760.0 890260.0 False True 1058182.0267715142 814228.1036439405 791811.8388615685 881170.1098043527 983224.4063026756 2126177.617022443 895385.072412952 972073.6067133875 1027679.6214477575 833442.8446100676 1.2696515827268187 0.9769453405348788 0.9500493572921891 1.0572651928118895 1.1797142571458328 2.551077894270232 1.0743209065906187 1.1663350558467862 1.233053505820864 1.0 19.668723740685188 2.9884171664644414 24.926719264692636 1.4166236133084111 1.0578566759817358 0.13157205934153315 0.4167855245433504 1131.3272228551364 2434667.67905197 0.12830956636725735 0.14348807382724285 973.6820560075535 -2.9884171664644414 -0.3587669373266753 AEAGVPAEFSIWTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEAGVPAEFSIWTR 14 0 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 ; 253.79 7.1711e-24 574580000.0 503420.0 666110.0 637370.0 582510.0 569580.0 664710.0 664110.0 526270.0 665150.0 707790.0 False True 500709.64265522006 688281.0686780014 727106.1558806471 656255.7062739035 642112.6368348434 618760.1622590335 631984.4621534324 565542.9397449126 501232.69505336357 662618.2362304947 0.7556532785811316 1.0387294388296608 1.0973228868813083 0.990397894883204 0.9690536748395221 0.9338109463739466 0.9537685919250701 0.8534973968754249 0.7564426507558533 1.0 19.337818383496035 1.8063751499464862 3.3804517954918794 0.8531655221185933 0.9731946626535495 0.14349722730908776 0.0999367648681605 0.3647199608283796 7.5757457638639085 0.052685829775254 0.026984932699499756 64.02876865673363 -1.8063751499464862 0.12002914053495617 AEAPAGPALGLPS(ph)PEAESGVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEAPAGPALGLPSPEAESGVDR 22 0 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR 357.92 2.3813999999999996e-96 5197900000.0 852860.0 964440.0 835920.0 830680.0 874530.0 894290.0 842620.0 823640.0 918830.0 827480.0 True False 848268.2965216548 996540.802383708 953610.2700531082 935844.0028284607 985896.2117545842 832469.8372322231 801859.2514790111 885104.1991591761 692396.6581912095 774669.5179587296 1.0950066794377808 1.2864076606623347 1.230989793642444 1.2080557981607811 1.2726668455374897 1.0746128741786543 1.0350984941190498 1.1425571532638126 0.8937961829396479 1.0 19.56322144741949 2.6306707911293215 4.983631311580831 1.0437207948797729 1.2220759469921099 0.6075895987548795 0.07592114509278858 0.16575926213153738 6.294632121375394 0.02433678325794074 0.02286859966311075 427.23890285239287 -2.6306707911293215 0.178355152112337 AEAPAGPALGLPS(ph)PEAESGVDRGEPEPMEVEEGELEIVPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVR 41 1 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 AEAPAGPALGLPS(0.5)PEAES(0.5)GVDRGEPEPMEVEEGELEIVPVR 157.42 7.3112e-15 33753000.0 32353.0 43131.0 37477.0 42689.0 44479.0 42414.0 40927.0 38044.0 46056.0 42516.0 True False 32178.815042756225 44566.58926175993 42753.435844076404 48093.42302299824 50143.13700231224 39482.020011816596 38947.2046536772 40883.03646351765 34706.11591878185 39802.592480221094 0.8084602795344722 1.1196906152257842 1.0741369639508196 1.2082987570947061 1.2597957539381293 0.9919459399896176 0.9785092434125 1.0271450655841943 0.8719561655695716 1.0 15.280574781085992 2.514455436928636 24.826078628437813 0.9787751704430422 1.1032507769681703 0.20596313650747267 0.11737173355500838 845.865922786667 562473.7896779022 0.038630259797791534 0.03641091604593685 326.9304986884211 -2.514455436928636 0.12447560652512812 AEAPAGPALGLPS(ph)PEAESGVDRGEPEPMEVEEGELEIVPVRR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRR 42 2 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 AEAPAGPALGLPS(1)PEAESGVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(1)PEAESGVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.946)PEAES(0.054)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(1)PEAESGVDRGEPEPMEVEEGELEIVPVRR 363.09 1.5897999999999988e-155 2534370000.0 129449.0 168759.0 156552.0 186608.0 202794.0 205194.0 176858.0 154339.0 205080.0 181640.0 True False 128752.06096713607 174376.04129803015 178593.16082562256 210232.55366665046 228618.6138457904 191009.42175472007 168302.70287683053 165856.559897562 154540.7819312092 170047.579690172 0.7571531520867473 1.0254544146746731 1.0502540591934368 1.2363160595975304 1.3444390932369357 1.1232704523212897 0.9897388906297835 0.9753538403766401 0.9088090651615489 1.0 17.375578946558218 2.1560164333001675 4.960776564188327 0.9648338457604545 1.1028882745117814 0.14120045525620062 0.14475175116613997 0.42358518015332647 18.274134768650445 0.06062371286285911 0.0444402404719616 143.22420929598863 -2.1560164333001675 0.1380544287513269 AEAPLPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 AEAPLPSPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK 197.73 2.8871e-05 4994920000.0 8341000.0 6872710.0 6138520.0 5246580.0 5134870.0 7876200.0 7022310.0 5990500.0 9062200.0 6677220.0 True False 8296092.982772227 7101463.997709065 7002770.259027664 5910796.490056035 5788765.25774103 7331736.832580513 6682614.03747072 6437541.529142639 6828942.237258665 6251074.102944347 1.3271467984781442 1.1360390039791997 1.1202507191090978 0.9455649369557088 0.926043294705855 1.1728763268263223 1.0690345254942843 1.0298296617713207 1.0924430145600312 1.0 22.57567267427519 4.7245488170118835 1.5364368223918539 1.040391073407091 1.4283364779378005 0.608939083393683 0.07002750412627091 0.7439414482802915 1.6740955781131115 0.01942226178240536 0.43366010759117757 53033.32015542391 -4.7245488170118835 0.3879454045307096 AEAPPLEREDS(ph)GTFSLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEAPPLEREDSGTFSLGK 18 1 O75569;G5E9Q4 O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 AEAPPLEREDS(0.882)GT(0.103)FS(0.015)LGK;AEAPPLEREDS(0.975)GT(0.018)FS(0.007)LGK;AEAPPLEREDS(0.998)GT(0.002)FSLGK;AEAPPLEREDS(0.976)GT(0.022)FS(0.002)LGK 154.42 1.5849e-08 1556980000.0 1141414.0 1051897.0 1041525.0 1161850.0 1137793.0 1294681.0 1271240.0 1881390.0 1827640.0 1919180.0 True False 1135268.7538470177 1086908.7557598366 1188162.6669024117 1308940.0908728347 1282684.1943225304 1205182.749821257 1209745.264591605 2021788.8753048428 1377242.6111212966 1796696.2893073391 0.6318645842390455 0.6049485170244665 0.6613041246723291 0.7285260723599848 0.7139126417503927 0.6707771129676448 0.6733165041811184 1.1252813774576678 0.7665416906116337 1.0 20.776915127898697 1.7589713072551587 24.999999999999996 0.9700075331573285 0.6705158539058385 0.7015405776963983 0.08805799308446167 4.643471171486698 5692.577806458718 0.03823571277467034 0.021204046009802677 57.407853302863984 -1.7589713072551587 -0.29949167925149 AEAPSS(ph)PDVAPAGK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEAPSSPDVAPAGK 14 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 AEAPSS(1)PDVAPAGK;AEAPS(0.006)S(0.994)PDVAPAGK;AEAPS(0.418)S(0.582)PDVAPAGK;AEAPS(0.364)S(0.636)PDVAPAGK 336.95 1.2195999999999996e-68 1809900000.0 5020300.0 4429490.0 4036040.0 3638170.0 3943450.0 4962300.0 4579060.0 4568370.0 5257300.0 4630660.0 True False 4993271.26260777 4576922.896966756 4604279.350111434 4098761.9489700305 4445624.982840628 4619267.880997723 4357553.374092088 4909284.967112813 3961708.859210783 4335127.314292515 1.1518165213153984 1.0557758896439013 1.0620863048085232 0.9454767188628557 1.025488909676035 1.0655437651781121 1.0051731029272513 1.1324430890247106 0.9138621710484476 1.0 22.047642932552442 4.823737501678183 1.7235712562156138 1.0272318929531212 1.2126512320580876 0.31543683510941445 0.05857938261201249 1.5377529452269083 3.8212755339964177 0.015142134273022658 0.500809869969533 66640.38564944816 -4.823737501678183 0.18541933910496633 AEASS(ph)PVPYLSPETNPASSTSAVNHNVNLTNVR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEASSPVPYLSPETNPASSTSAVNHNVNLTNVR 33 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 AEAS(0.003)S(0.997)PVPYLSPETNPASSTSAVNHNVNLTNVR;AEAS(0.004)S(0.996)PVPYLSPETNPASSTSAVNHNVNLTNVR;AEAS(0.021)S(0.979)PVPYLSPETNPASSTSAVNHNVNLTNVR;AEAS(0.034)S(0.966)PVPYLSPETNPASSTSAVNHNVNLTNVR 406.52 2.181799999999999e-186 4526830000.0 739290.0 1019620.0 999030.0 1112890.0 1119670.0 1059120.0 1039790.0 985600.0 1127070.0 990660.0 True False 735309.7447828411 1053557.435326695 1139684.7402755735 1253781.7598928176 1262253.337695969 985905.5273003054 989491.385316465 1059150.4767753908 849318.7004642481 927435.2306533038 0.7928421527235646 1.135990310163814 1.2288564231841363 1.3518806688092158 1.361015083292461 1.0630451536823913 1.0669115778785412 1.1420209646654291 0.9157714440780637 1.0 19.822887006113028 1.5223764682828387 1.2727189495141424 0.9675393746729983 1.1711440229586523 0.1560288458271829 0.15688824616318003 0.7824513323335718 2.4294665872512966 0.14618460582545573 0.050534132479443945 33.294804433415564 -1.5223764682828387 0.20360464828565394 AEASSGDHPTDTEMK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEASSGDHPTDTEMK 15 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;; 194.48 5.0079e-08 1803180000.0 994620.0 949120.0 901800.0 789300.0 883880.0 1143610.0 1018140.0 1057710.0 1365920.0 1133630.0 False True 989265.0764326716 980710.885444845 1028765.601413885 889225.2990712485 996436.8788327927 1064554.9324683738 968888.6785274972 1136641.6911425523 1029307.318390275 1061280.7628505277 0.9321426629609051 0.9240824103988491 0.9693623378706036 0.8378794096699257 0.9389003491935832 1.0030851116240456 0.9129428445731254 1.0710094170458817 0.969872774877805 1.0 20.017374942436916 2.3459378789921823 1.2908591689733508 1.0116110752366616 0.9200298372253639 0.3339626234522548 0.04858283100358407 0.46725205470425757 1.5454452535031271 0.027783935025620973 0.017763884144675293 221.78791541009997 -2.3459378789921823 -0.0915812380112977 AEASSGDHPTDTEMKEEQK ddPTM_BT-474_Trastuzumab_2h_R1 9 AEASSGDHPTDTEMKEEQK 19 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;;;;;; 326.18 1.6636999999999999e-63 14680910000.0 12729460.0 10181700.0 9815850.0 9199880.0 9363300.0 14084490.0 14143560.0 13074030.0 21611760.0 14266080.0 False True 12660926.001735961 10520591.729532367 11197836.35910232 10364583.864715045 10555660.754372861 13110862.357623214 13459381.969153924 14049680.507179158 16285831.330747182 13355606.560594434 0.9479858473138824 0.787728485546531 0.8384371243865036 0.7760474088309574 0.7903542760474256 0.9816747968831805 1.0077701756253945 1.0519687326394132 1.219400351220164 1.0 23.670942163366128 2.3714995027683785 1.629232850757811 1.0883168457512071 0.8234430511314993 0.7143770094551022 0.07237048708022421 0.19473435132017902 1.0471436397914902 0.03499702991253814 0.024487159629242007 235.23368001543795 -2.3714995027683785 -0.26487379461970784 AECLEKFPVIQHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AECLEKFPVIQHFK 14 1 Q15257;Q15257-2;A6PVN5;F6WIT2;Q15257-3;Q15257-4;Q68CR8;B7ZBQ0 Q15257 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator 0 155.98 3.4231e-06 185140000.0 444540.0 681500.0 605550.0 603430.0 583070.0 609760.0 750780.0 589800.0 1057300.0 749710.0 False True 442146.6460330366 704183.3155245509 690806.1764650447 679824.176128928 657320.5083733499 567608.7264206466 714461.9031418809 633813.8709437146 796742.5820941472 701862.8659409772 0.6299615886363458 1.0033061295819699 0.9842466527116961 0.9685997209974881 0.9365369508359584 0.8087174204032891 1.0179508530972248 0.903045169791067 1.1351826984406221 1.0 19.4208296503321 4.742748382106071 24.946977980047908 0.9633940244267882 0.6299614537314955 0.6209123653221642 0.08010670747274637 267.42859853549106 1593040.842179014 0.018284621717752206 0.14211741051702656 55302.96067251182 -4.742748382106071 -0.33343257069529275 AEDEALLS(ph)EEDDPIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEDEALLSEEDDPIDR 16 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 AEDEALLS(1)EEDDPIDR 197.15 4.6201e-11 123750000.0 64670.0 74722.0 70735.0 52992.0 69104.0 73969.0 70584.0 53507.0 70827.0 63346.0 True False 64321.823905512465 77209.07659959716 80693.8731603583 59700.78176660779 77903.9847885021 68855.69713429676 67169.58226293518 57499.96404304065 53372.6348831761 59303.20404676091 1.08462645382186 1.3019376919115089 1.3607000575673909 1.0067041524355647 1.3136555779865515 1.1610788698702292 1.1326467657628005 0.9695928738977004 0.8999958053040689 1.0 15.855822432676526 1.8666277420069006 1.9857259493166795 0.9404357340924943 1.2136795482748683 0.5367960965258147 0.10317259092119413 0.23596419543619623 1.7446103629314016 0.06375356247176046 0.02948887209500869 73.55763237548472 -1.8666277420069006 0.2732438141823741 AEDEECENDGVGGNLLCSYGT(ph)PPDSPGNLLSFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPR 34 0 P78356 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 1 AEDEECENDGVGGNLLCS(0.005)Y(0.003)GT(0.789)PPDS(0.203)PGNLLSFPR 277.9 1.3498999999999999e-73 59371000.0 14843.0 15901.0 13470.0 16761.0 12998.0 18088.0 15129.0 12818.0 22518.0 18284.0 True False 14763.086937212334 16430.255172642515 15366.458916661142 18882.94088145596 14653.218254818119 16837.619134572054 14397.152471607547 13774.54424848516 16968.740625741048 17117.099466280055 0.8624759683318413 0.9598737919943392 0.8977256308484041 1.103162420634088 0.8560573176363393 0.9836724479951429 0.8410976696121509 0.8047242043326567 0.9913327114309718 1.0 14.063150633850558 2.2399976669444093 24.99978641183335 0.8817016520207457 0.9457146297967368 0.0 0.0879140643921708 87.50233312563391 1522271.7017138295 0.030563415660423487 0.024296141473310565 173.77914932058263 -2.2399976669444093 0.06401297777599113 AEDEGEGGREETER ddPTM_BT-474_Trastuzumab_2h_R1 1 AEDEGEGGREETER 14 1 Q9BTK6 Q9BTK6 PAGR1 PAXIP1-associated glutamate-rich protein 1 0 140.74 8.9974e-06 163810000.0 157970.0 167320.0 158140.0 157980.0 155410.0 161670.0 162250.0 151520.0 178890.0 153890.0 False True 157119.50707211698 172889.14505292414 180404.73742247897 177980.25180194573 175200.54231276218 150494.1334302446 154401.34764480946 162827.19180297016 134804.95650318934 144068.60844814256 1.0905880799749106 1.2000473032621504 1.2522140622147786 1.2353853745037708 1.21609102912815 1.044600451488465 1.071720962033073 1.1302059036794248 0.9356997194271668 1.0 17.136396490935937 2.738017612855747 24.995253021881663 1.0544320685511825 1.2039235753297024 0.6189487149648346 0.06287072944309206 36.52444703740176 1681232.6774605124 0.020240374146336698 0.02018142289144094 547.0381476303988 -2.738017612855747 0.14949150677851986 AEDEVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDEVQR 7 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 ; 117.18 0.012306 793890000.0 338540.0 382570.0 331260.0 329250.0 324020.0 307300.0 328760.0 341680.0 393670.0 359300.0 False True 336717.33825532976 395303.6111815513 377898.528636464 370933.0162412369 365282.02638299426 286057.0743063904 312856.62281483854 367177.89661588485 296655.3034077397 336369.16638779367 1.001035088534645 1.175207631028265 1.1234636417322268 1.1027557020895167 1.0859557381721114 0.8504259691169215 0.9300989926471205 1.0915920164708925 0.8819336997902221 1.0 18.35968594002341 2.9214458467518267 9.87995534153519 0.9659182562546543 1.1059467148392625 0.4911378938598935 0.07399474709195883 0.47606234545168125 57.75453716107628 0.023199920157252557 0.024628782267513572 834.5374812561191 -2.9214458467518267 0.14002845858460822 AEDGATPS(ph)PSNETPK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 AEDGATPS(1)PSNETPK;AEDGATPS(1)PSNETPK;AEDGATPS(1)PSNETPK 377.75 6.134499999999998e-98 2650500000.0 2490580.0 2050750.0 1814550.0 1755500.0 1745150.0 2414450.0 2247780.0 2093260.0 3092560.0 2273780.0 True False 2477170.9940094487 2119007.974045445 2070022.8676486625 1977746.1200045324 1967384.5081855527 2247544.75450395 2139046.2940465314 2249469.6905589034 2330440.0261809085 2128665.4137190045 1.1637202249091687 0.9954631481249622 0.972451026970985 0.9291014488506204 0.9242337924532362 1.0558468888622805 1.0048767083171566 1.056751181308875 1.094789256762237 1.0 21.02151777233067 2.175268527034388 1.8119519484634183 1.052033824292622 0.9946143764389059 0.06802088734574185 0.06813306239961879 0.8373704268830051 5.407051590452043 0.037634380475503014 0.022374359295565725 149.71610741628282 -2.175268527034388 -0.057419447853716 AEDGATPS(ph)PSNETPKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 AEDGAT(0.361)PS(0.638)PSNETPKK;AEDGAT(0.001)PS(0.997)PS(0.002)NETPKK 183.45 1.2133e-09 646950000.0 800530.0 638930.0 582610.0 513120.0 533850.0 796670.0 671420.0 688880.0 985970.0 706890.0 True False 796220.0354272439 660196.398808658 664636.4238630997 578080.9393886211 601832.6331231452 741598.0780594602 638940.8495265214 740287.7236617605 742990.9048211158 661775.6750010229 1.203156999425845 0.9976135777544825 1.004322837738139 0.8735300513844478 0.9094209047835053 1.1206185208580142 0.9654946134512028 1.1186384625887258 1.122723201967143 1.0 19.335982737679352 1.7267347874259833 10.581217582566358 1.089504800057711 1.0049431133564368 0.09719260770219229 0.0952139150266334 0.1964303843349506 79.51813631226105 0.045615306252498565 0.02477960034758866 53.30093008829198 -1.7267347874259833 -0.08456168670127417 AEDGATPSPSNET(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 9 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPS(0.002)PS(0.009)NET(0.989)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK 411.44 4.198399999999997e-132 15041030000.0 8023114.0 5855468.0 4873660.0 4745793.0 4742843.0 6927830.0 6589075.0 6259486.0 10255493.0 6418790.0 True False 7979918.445675773 6050363.712674848 5559828.9653878845 5346609.907202878 5346815.943017098 6448925.418457659 6270336.269539137 6726600.630345866 7728164.166715638 6009137.3267974015 1.3279640673362192 1.0068606163639495 0.9252291407277626 0.8897466668568181 0.8897809539438016 1.0731865603568498 1.043466961817786 1.1193953914730785 1.2860688225999322 1.0 22.518726461478153 1.8627937836789572 2.0202924157032123 1.1537394595549915 1.0022837186532474 0.12264158929411728 0.13550664087522926 0.5775002919771631 4.42117944421622 0.08723743198176015 0.04043102469803212 72.91112237080112 -1.8627937836789572 -0.15145574090174407 AEDGATPSPSNET(ph)PKK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 AEDGATPSPSNET(1)PKK;AEDGATPSPS(0.002)NET(0.998)PKK;AEDGATPSPSNET(1)PKK 264.67 2.9128000000000004e-27 2652540000.0 2154870.0 1316420.0 1229590.0 1079340.0 1222120.0 1868140.0 1864330.0 1810970.0 3011980.0 1891680.0 True False 2143268.4193485663 1360236.2439073056 1402705.5842121297 1215984.3333327759 1377749.737927244 1738999.8789285384 1774145.235467783 1946113.7773193303 2269717.8874642276 1770951.3628512723 1.2102356192876211 0.768082214136753 0.7920633020399507 0.6866277407952148 0.777971528088177 0.9819580116128704 1.0018034784486505 1.098908653361345 1.2816376186695098 1.0 20.756093159992876 2.1884752177245144 1.6153017040756945 1.1352755925596327 0.8349510535349263 0.38655101232382516 0.14903935766192702 0.3734056019038843 1.9046238259692236 0.08452507844920061 0.04907024276284916 154.33883499821735 -2.1884752177245144 -0.30032453902470646 AEDGENYDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDGENYDIK 10 0 E5RJD8;O75347;E5RIW3;E5RHG6;O75347-2;E5RIX8;A0A494C144 E5RJD8 TBCA Tubulin-specific chaperone A 0 ; 135.86 0.00030947 254840000.0 554560.0 531610.0 486750.0 451490.0 445490.0 579690.0 550060.0 507360.0 737180.0 540310.0 False True 551574.3105774082 549304.3174849695 555280.1690931559 508648.58770768694 502220.51087389776 539617.3947434804 523451.49636674207 545221.7795218776 555511.8667059144 505826.9532173364 1.09044072695038 1.0859530398510662 1.0977670635407424 1.005578260455287 0.9928702052737608 1.0668023744310544 1.034843028900109 1.0778820228024002 1.0982251206120093 1.0 18.948284388142113 3.7667177361608695 24.48232441940813 1.0436632737007687 1.0908435652088673 0.33960049044242235 0.03281773002824929 751.7648877657048 653649.2645687844 0.008967117210898129 0.016161575997451546 5844.1013120513735 -3.7667177361608695 0.04718029150809855 AEDGENYDIKK ddPTM_BT-474_Trastuzumab_2h_R1 6 AEDGENYDIKK 11 1 E5RJD8;O75347;E5RIW3;E5RHG6;O75347-2;E5RIX8;A0A494C144 E5RJD8 TBCA Tubulin-specific chaperone A 0 ;;;;; 167.44 3.0846e-05 8289380000.0 9108180.0 7526770.0 6624300.0 6154220.0 5946550.0 9370350.0 8680120.0 8347550.0 12961120.0 9438890.0 False True 9059142.570893928 7777293.989421445 7556943.860552211 6933343.620993615 6703807.894536744 8722599.7599313 8260229.434321499 8970486.569000017 9767025.646109989 8836491.959159702 1.0251967197801195 0.8801336577191906 0.8551972768694549 0.7846262581393143 0.7586503700246943 0.9871111522813819 0.9347860522590232 1.0151637788456787 1.105305780987637 1.0 23.07504231025396 2.0783137103102916 1.4639720763527828 1.0454152904436715 0.863144033733615 0.46835846420373284 0.07771222038621588 0.3692525880836255 1.4929706497946027 0.052389807406865434 0.026700633296667536 119.76053027620854 -2.0783137103102916 -0.1822712567100565 AEDGHAVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDGHAVAK 9 0 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 90.15 0.011625 419980000.0 893730.0 893560.0 842880.0 814000.0 923060.0 919820.0 970550.0 907270.0 1339610.0 1023240.0 False True 888918.2569827368 923301.6044315735 961550.1775557052 917052.3165386999 1040606.2195947375 856235.0084233789 923600.788638952 974975.0944237114 1009481.0653543356 957935.9471601616 0.9279516648456189 0.9638448240393704 1.0037729353473561 0.9573211228342952 1.0863004177676547 0.8938332578098994 0.9641571457642888 1.0177873555262886 1.0538085227378526 1.0 19.86956966713752 4.577605074690384 2.1278426490164914 0.9955937873140749 0.920243702575868 0.15916266005171786 0.05008004230974008 0.9130058743373287 5.958945970175991 0.01265018995468851 0.1152839716154726 37809.86047043015 -4.577605074690384 -0.07535008473820692 AEDKEWMPVTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEDKEWMPVTK 11 1 P15880;E9PQD7;E9PPT0;E9PMM9 P15880 RPS2 40S ribosomal protein S2 0 ;;; 179.67 6.3842e-06 7007900000.0 12204800.0 10625200.0 9930500.0 9105700.0 9283300.0 12354100.0 12261100.0 11905600.0 16718500.0 12953200.0 False True 12139090.712880753 10978853.35893096 11328628.082546666 10258480.68637155 10465473.228570009 11500090.145423284 11667983.751049472 12794056.327411821 12598449.691422474 12126515.686207552 1.001036985973432 0.9053592674949558 0.9342030617608992 0.8459545142088369 0.863023930317694 0.9483424953223166 0.9621876599162277 1.0550480169636458 1.0389175272953046 1.0 23.531661744403177 2.0598860269610237 2.1940066125913344 1.0358503328172932 0.9090502740736414 0.5887514294951397 0.04279728074855901 0.20845474014658905 1.9184908500936322 0.02329683771883177 0.013176100160768742 114.78523480669163 -2.0598860269610237 -0.12680005874365186 AEDMYSAQSHQAAT(ph)PPKDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEDMYSAQSHQAATPPKDGK 20 1 A8MXZ4;J9JIE0;A0A0C4DFY5;Q9NQ84;Q9NQ84-2 A8MXZ4 GPRC5C G-protein coupled receptor family C group 5 member C 1 AEDMYSAQSHQAAT(1)PPKDGK 118.54 9.3937e-05 701830000.0 468520.0 410040.0 398060.0 330890.0 448380.0 563530.0 476780.0 509500.0 750370.0 515470.0 True False 465997.54037746525 423687.9335255858 454103.38800045534 372780.64007308375 505478.5352435252 524574.4975069317 453716.32992352726 547521.4771885767 565451.3679428588 482572.2632839304 0.9656533867204192 0.8779782133402497 0.9410059851145549 0.7724866687038564 1.0474670297122266 1.0870382270567598 0.940203912334213 1.134589612471018 1.171744443194749 1.0 18.880385470859338 3.108500729324049 8.14151445013467 1.069030383692324 0.8925665279937457 0.5536170868217112 0.07674478134663988 0.18223634992337448 12.545834053614758 0.022065457393212258 0.026420863523339982 1283.8099264120658 -3.108500729324049 -0.17646385569857836 AEDNADTLALVFEAPNQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDNADTLALVFEAPNQEK 19 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 ; 328.73 7.7278e-75 107233000.0 399810.0 360800.0 342010.0 310760.0 319530.0 431990.0 409230.0 400210.0 558270.0 460380.0 False True 397657.46738306666 372809.00989179424 390162.0351957891 350102.18413705926 360220.2514973098 402127.548095078 389433.9814895867 430075.70242520253 420691.8389347384 430998.15424885205 0.9226430866649722 0.8649898061432062 0.9052522182508356 0.8123055300485472 0.8357814249230493 0.9330145480458262 0.9035629912807775 0.9978597313827082 0.9760873330604499 1.0 18.717322165417706 1.9987337706440278 1.4568696683557418 0.9955754453853806 0.870019066415187 0.6759552378570571 0.034976973813216065 0.2360153131296273 0.9335652067526513 0.024068273407891673 0.011448599042715982 99.7088645396975 -1.9987337706440278 -0.12555637897019356 AEDQTES(ph)SCESHRK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDQTESSCESHRK 14 1 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 AEDQTES(0.963)S(0.03)CES(0.007)HRK;AEDQTES(0.712)S(0.235)CES(0.052)HRK 116.96 0.00015582 275760000.0 432430.0 209466.0 162806.0 221280.0 205439.0 262470.0 207567.0 246080.0 397940.0 307820.0 True False 430101.84492748993 216437.94918512888 185727.66966487994 249294.02531165045 231600.43891764726 244326.06668792173 197526.19122705824 264443.739168921 299873.01912280824 288174.6640620393 1.4925040212240728 0.7510651565764759 0.6444968723027498 0.8650796076159615 0.8036807804442776 0.8478402065051851 0.6854391307090553 0.9176508976930415 1.0405946688576706 1.0 18.136583975671858 4.742608862839082 24.941759544053625 0.8279683874202729 1.4925042888058393 0.7249924214154249 0.12045758625249342 199.92247289187802 1231699.0036281107 0.028559722545111677 0.21964933138865786 55285.19717420515 -4.742608862839082 0.6645359013855664 AEDREQLVAK ddPTM_BT-474_Trastuzumab_2h_R1 5 AEDREQLVAK 10 1 Q13268;C9JZP6;Q13268-2;H0YJP4 Q13268;H0YJP4 DHRS2 Dehydrogenase/reductase SDR family member 2, mitochondrial 0 ;;;; 175.15 2.6339e-06 5091340000.0 4323590.0 4962280.0 5296070.0 4304200.0 5857930.0 9116800.0 5220220.0 4442130.0 7952260.0 6618520.0 False True 4300312.27183601 5127446.490038398 6041710.62173434 4849111.278680431 6603902.662828639 8486577.074638782 4967698.015423036 4773624.297279088 5992532.077824652 6196120.387199954 0.6940330405328574 0.8275253173955044 0.9750796053310073 0.7826044323957623 1.065812516566187 1.3696598103823951 0.8017433014512415 0.7704214894114256 0.9671426155960626 1.0 22.5629337444925 4.76336725469696 1.264602315760334 0.9568695035318041 0.5587723747195922 0.21486639607594815 0.16569134125616258 2.7961334839699745 3.702637113774431 0.05141274937348396 1.4709819651571312 57991.88889558105 -4.76336725469696 -0.39809712881221193 AEDS(ph)DS(ph)EPEPEDNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEDSDSEPEPEDNVR 15 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 2 AEDS(1)DS(1)EPEPEDNVR;AEDS(1)DS(1)EPEPEDNVR 281.92 1.2617e-33 1211180000.0 1422140.0 1367010.0 1101200.0 1214120.0 1222550.0 1492670.0 1349000.0 1253550.0 1422000.0 1434620.0 True False 1414483.3562546063 1412510.101475003 1256239.388198015 1367827.4675134718 1378234.495878435 1389485.2362672305 1283743.716319558 1347096.266397923 1071567.153823774 1343061.3233600238 1.053178534481137 1.051709312826636 0.9353551966303365 1.0184400695059024 1.0261888060557176 1.0345657432760142 0.9558340293114338 1.003004288015535 0.7978542268963303 1.0 20.35709374816816 1.3749500444201783 12.499791375031412 0.8987306254241998 1.0078288675023461 0.3695212788591413 0.0579093570299054 0.4905729784843438 56.99972563195105 0.03591869668043716 0.013140739628668586 23.711009494089346 -1.3749500444201783 0.10909824207814633 AEEAEAQKR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEEAEAQKR 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 135.72 0.00034144 2385750000.0 1503160.0 1420980.0 1305400.0 1184290.0 1162080.0 1412730.0 1624890.0 1402260.0 2081940.0 1674220.0 False True 1495067.153576776 1468276.4602994507 1489188.9732597964 1334220.9925720098 1310063.9998122044 1315071.3003087123 1546287.8630174084 1506903.761732001 1568873.783566717 1567369.846228145 0.953870049991478 0.9367772793593284 0.9501197033000922 0.8512483481692563 0.8358359087772782 0.8390306241206656 0.986549452089135 0.9614219422163475 1.000959529330101 1.0 20.57991421649997 2.2156761549152004 24.964145003171556 0.9816873564096343 0.8943012258509563 0.5336449203830586 0.042350971984952725 219.4297330455909 239369.4048533919 0.017962532865729963 0.013274889536531997 164.31460037410525 -2.2156761549152004 -0.08738613055867805 AEEAEELRLDLEDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEEAEELRLDLEDVK 15 1 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 0 159.13 1.6265e-06 30509000.0 58839.0 58901.0 52934.0 46569.0 51224.0 68381.0 62346.0 54543.0 77233.0 58091.0 False True 58522.21736162746 60861.484178593644 60386.64708942396 52464.63062517283 57747.07277156509 63653.98242155964 59330.08579515128 58613.275623742025 58199.9620191784 54383.582645792754 1.076100810474186 1.1191150199682924 1.1103837620027708 0.9647144978822322 1.061847527546671 1.1704632046061803 1.090955816235494 1.0777751808941645 1.07017521074774 1.0 15.730883574955259 0.6689525277925551 1.8849991193944597 1.0000455723021677 1.08437631120061 0.20585920616811504 0.049256954203360064 2.5184667558114735 12.011099119322488 0.04884966634915949 0.013606470931275115 4.66608373126545 -0.6689525277925551 0.08433073889844223 AEEDEILNR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEEDEILNR 9 0 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 0 ;; 225.24 6.526699999999999e-07 1162760000.0 1047530.0 1580050.0 1631910.0 1086410.0 1557920.0 1931160.0 1298840.0 1220610.0 1539690.0 1456290.0 False True 1041890.2148715246 1632641.0090896043 1861668.7431839986 1223949.3946078722 1756311.877484707 1797663.4546616632 1236010.1471493654 1311698.1163319906 1160254.0302889794 1363348.325407405 0.7642142477126526 1.1975230237670387 1.3655121794554463 0.8977525198794104 1.288234154657339 1.3185650513227962 0.9065989403551822 0.962115177674803 0.8510327175135265 1.0 20.378722776468326 2.2096350172836474 24.85987900208832 0.9298447057755752 1.1474739308391608 0.24476041802549342 0.1791912085195535 277.62475974742597 238600.6964741249 0.06626317650460399 0.04894694688367079 162.04476946164456 -2.2096350172836474 0.21762922506358562 AEEDEILNRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 16 AEEDEILNRSPR 12 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR 226.67 8.9406e-12 192422578000.0 49824737.0 75985018.0 78429044.0 62497394.0 89164676.0 99057300.0 73848845.0 63824143.0 88297510.0 77302941.0 True False 49556486.15204072 78514133.3902167 89471171.67772886 70409557.67239788 100519268.96815999 92209702.00680259 70276494.23736614 68587024.64309129 66537771.786516316 72369401.12300254 0.6847712622053085 1.084907877802806 1.236312174611744 0.9729188936181243 1.388974724238944 1.274153172140785 0.9710802237802245 0.9477351419077996 0.919418576829529 1.0 26.108876497164484 2.036960523506432 24.234179088135026 0.9522848728205197 1.1189360607671064 0.13665483826972225 0.18031805595066136 226.78826897971035 148698.73487708767 0.06923093154350017 0.051130259117040666 108.88311162799515 -2.036960523506432 0.16665118794658673 AEEDTQFNYHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEEDTQFNYHR 11 0 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 159.94 2.8071e-05 170460000.0 190770.0 241550.0 228540.0 229030.0 206330.0 206040.0 222090.0 176970.0 221890.0 240970.0 False True 189742.91551653956 249589.84572994127 260716.4454947095 258025.17451702533 232604.90248627667 191796.93976599004 211346.65823381083 190176.4000354513 167208.18267366925 225591.0882952037 0.8410922477054857 1.106381673212788 1.155703655959767 1.1437737920718707 1.03109083006814 0.850197324794181 0.9368573015492841 0.8430137975423503 0.7412003015600696 1.0 17.78335055136563 2.8185290365355544 4.238999633968332 0.8678425929861788 1.0729708831188014 0.4345464530198927 0.10315966188332587 0.20324901127452422 6.818547820965834 0.0324049787017303 0.03422205994912503 658.4594524740879 -2.8185290365355544 0.20512829013262257 AEEFKK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEEFKK 6 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ;;; 97.071 0.066524 11213100000.0 9693540.0 8328830.0 8094310.0 6717640.0 6980570.0 9383740.0 9850440.0 9931810.0 14718800.0 10247040.0 False True 9641351.057693545 8606050.07166595 9233918.490996242 7568092.535224851 7869504.212420045 8735064.140747964 9373936.584864957 10672972.094909301 11091548.96181531 9593065.13426769 1.0050334197412432 0.8971116062710768 0.9625618466835455 0.7889128687545996 0.8203326155171345 0.9105602868831951 0.9771576085082571 1.1125716281008082 1.1562049049573155 1.0 23.193560421843358 1.9633396854361722 2.647807147160017 1.1007684756826412 0.8919024225308575 0.60641505726925 0.0689494279763918 0.1806370188596692 2.3441021301329963 0.037247764237680996 0.02031886696366113 91.9051155543633 -1.9633396854361722 -0.20886605315178375 AEEGKS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEEGKSPFR 9 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 AEEGKS(1)PFR;AEEGKS(1)PFR;AEEGKS(1)PFR;AEEGKS(1)PFR 122.55 0.00035291 1827290000.0 2147720.0 1799350.0 1686720.0 1454710.0 1527990.0 2159420.0 2086310.0 1981310.0 2764530.0 2146230.0 True False 2136156.9141541226 1859240.2770199566 1924195.5147669404 1638876.1368452248 1722570.4693937146 2010144.3781279048 1985387.2148218362 2129165.4130883226 2083248.6243041093 2009255.763920052 1.0631582860245163 0.9253377844702978 0.9576657931356836 0.8156632750664765 0.8573176697191525 1.0004422603751149 0.9881207014423846 1.0596786388878274 1.0368260037934132 1.0 20.938229789867876 2.555701288051441 5.525489872140629 1.024738711668996 0.919799368785417 0.3526280072174026 0.06335572750527811 0.24887393090951537 13.099149693480372 0.021998812390492402 0.020505848644375015 359.5019811566911 -2.555701288051441 -0.10493934288357909 AEEKEGEKDAAAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEEKEGEKDAAAAK 14 2 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 ; 102.52 0.00065752 313030000.0 276370.0 203343.0 205269.0 179845.0 173063.0 308000.0 274290.0 248018.0 481950.0 267650.0 False True 274882.0546275935 210111.1488315607 234169.09096986742 202613.3585600768 195101.54722523366 286708.6849540129 261021.544810446 266526.3625698856 363179.88029913366 250568.34785330662 1.097034230311169 0.8385382696244169 0.9345517619286853 0.8086151355345779 0.7786360444035589 1.1442334493176465 1.041717946606964 1.063687272767275 1.4494244121837552 1.0 17.934844657336242 2.724467004014526 24.694658235474442 1.1288324818670066 0.8863239730050311 0.43649648446216094 0.14074466153442897 663.6830889252184 1162895.677551526 0.04480239859389907 0.0424354528799195 530.2333060590809 -2.724467004014526 -0.2425085088619755 AEEKS(ph)PISINVK ddPTM_BT-474_Trastuzumab_2h_R1 7 AEEKSPISINVK 12 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 AEEKS(0.982)PIS(0.018)INVK;AEEKS(0.97)PIS(0.03)INVK;AEEKS(0.92)PIS(0.08)INVK;AEEKS(0.991)PIS(0.009)INVK;AEEKS(1)PISINVK;AEEKS(0.998)PIS(0.002)INVK;AEEKS(0.997)PIS(0.003)INVK 210.67 2.4742e-08 15547300000.0 12409690.0 9677420.0 8888700.0 7435370.0 7871570.0 11927450.0 11581050.0 11963710.0 18831750.0 11985960.0 True False 12342877.607886178 9999527.074576084 10140151.698034585 8376687.079634338 8873967.781049285 11102933.455697214 11020830.367592748 12856502.790688429 14190917.545021722 11221005.771103363 1.0999796149888712 0.8911435640044972 0.9036758295007544 0.7465183826218331 0.7908353281398149 0.9894775639711182 0.9821606540809281 1.1457531573325488 1.264674293419094 1.0 23.4196986588705 2.0051573257394293 1.8663307056880005 1.1540567607599848 0.8857889020289946 0.47527080876208383 0.10923543451687293 0.2824771480633787 1.8375578371032375 0.06636889175922021 0.033885567564401406 101.19459712703714 -2.0051573257394293 -0.2682678587309901 AEELHYPLGER ddPTM_BT-474_Trastuzumab_2h_R1 1 AEELHYPLGER 11 0 Q14257;Q14257-2;A8MXP8;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 106.49 0.0023242 235980000.0 182400.0 223400.0 217780.0 195850.0 207530.0 193700.0 215730.0 184400.0 234000.0 206850.0 False True 181417.97866654512 230835.73395184826 248441.5310223058 220644.58991904696 233957.71537331917 180309.97492075458 205294.31573136983 198160.86436422716 176333.83543935537 193648.65590680524 0.9368408875187535 1.1920337524208768 1.2829499376534275 1.1394067719490586 1.2081556377334886 0.9311191656684155 1.0601380875587856 1.0233010058153642 0.9105864154524121 1.0 17.563081962256383 2.742196149793801 24.999232379223336 0.9957718693515756 1.1606973039467097 0.4464313817620412 0.09224979112305794 305.35364044478416 2099725.500264346 0.02871813607905909 0.029391477003255336 552.3268422520592 -2.742196149793801 0.1649254345951341 AEELS(ph)PAALSPLLEPIR ddPTM_BT-474_Trastuzumab_2h_R1 6 AEELSPAALSPLLEPIR 17 0 A0A5F9ZH52;A5YM69 A0A5F9ZH52;A5YM69 ARHGEF35 Rho guanine nucleotide exchange factor 35 1 AEELS(1)PAALSPLLEPIR;AEELS(1)PAALSPLLEPIR;AEELS(1)PAALSPLLEPIR;AEELS(1)PAALSPLLEPIR;AEELS(1)PAALSPLLEPIR;AEELS(1)PAALSPLLEPIR 272.24 1.3123e-35 395308000.0 219434.0 255201.0 224608.0 240224.0 224802.0 226299.0 233126.0 180514.0 218646.0 209971.0 True False 218252.5917254095 263695.21101273753 256230.85407226603 270636.3337692783 253429.20219415447 210655.48278054607 221848.80475219677 193984.87131151863 164763.6230062962 196570.47101478296 1.110302023486508 1.3414792651786773 1.303506334138032 1.3767903814450608 1.2892536752129748 1.0716537519244376 1.1285968009687108 0.9868464490626881 0.838191118715411 1.0 17.584687089501987 2.2161297025806146 1.1459455329260975 0.9311524138672678 1.2938325270227042 0.7284694085056946 0.08801341733898947 0.24836595233872233 0.6239177885450103 0.05987778027577919 0.0331971643725323 164.48628901905803 -2.2161297025806146 0.36268011315543647 AEELSPAALS(ph)PLLEPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEELSPAALSPLLEPIR 17 0 A0A5F9ZH52;A5YM69 A0A5F9ZH52;A5YM69 ARHGEF35 Rho guanine nucleotide exchange factor 35 1 AEELS(0.024)PAALS(0.976)PLLEPIR 79.771 0.013462 144490000.0 17428.0 24374.0 24772.0 23710.0 22437.0 21488.0 18239.0 16082.0 15377.0 17906.0 True False 17334.169584432828 25185.273855605843 28259.682277916072 26711.68356895893 25294.218955481923 20002.58513731116 17356.709890253824 17282.120502741323 11587.544391243455 16763.223749902132 1.0340594293227179 1.502412318260256 1.6858142979855566 1.5934693688685555 1.5089113724697254 1.1932421493465981 1.0354040576685113 1.0309544727542173 0.6912479702068706 1.0 14.033012001185764 2.3841859002284296 1.6883045299818196 0.9209448906510759 1.488732260945449 0.6466646436516237 0.1834247231184524 0.2348839678559371 1.359976220701427 0.09057333637475062 0.0648608377413339 242.2065592701585 -2.3841859002284296 0.5677873702943731 AEELSPAALS(ph)PSLEPIR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEELSPAALSPSLEPIR 17 0 A0A2R8YF49;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 AEELSPAALS(0.766)PS(0.234)LEPIR;AEELSPAALS(0.789)PS(0.211)LEPIR;AEELSPAALS(0.997)PS(0.003)LEPIR;AEELSPAALS(0.99)PS(0.01)LEPIR 242.67 2.1343e-20 311640000.0 353577.0 464415.0 417506.0 447765.0 405522.0 414727.0 396958.0 344864.0 431282.0 389828.0 True False 351673.38071809773 479872.77253020456 476287.2157727935 504452.0030896199 457162.8229827932 386057.89865234715 377755.62501317885 370599.50286390894 324998.3299827178 364948.84329145774 0.9636237713383904 1.31490421562171 1.3050793954494548 1.3822540127541967 1.2526764542111206 1.057841135131455 1.0350919915411083 1.0154834291882888 0.8905311962399223 1.0 18.47733472280704 2.626532847152174 2.8190340083927437 0.9934616416006151 1.2602865036967785 0.5556246939914944 0.10996072159985888 0.20727256903908942 3.1968116605814845 0.03911831664602355 0.03649066877283694 423.1875156012051 -2.626532847152174 0.2668248620961634 AEENLLMVLGTDMSDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEENLLMVLGTDMSDRR 17 1 A0A6I8PIQ6;A0A0A0MS45;J3KNI1;Q9H9E3;Q9H9E3-2;Q9H9E3-3 A0A6I8PIQ6 COG4 Conserved oligomeric Golgi complex subunit 4 0 ;; 179.81 1.4353e-09 179605000.0 113860.0 150275.0 133587.0 142558.0 133719.0 131970.0 150938.0 124445.0 155689.0 141734.0 False True 113246.99041103537 155276.81253184416 152394.88844098063 160605.82818319893 150747.32203539193 122847.22452396477 143636.55230084615 133731.7178189058 117321.53207571711 132688.4147754177 0.8534806192591268 1.1702363977643302 1.1485169123387087 1.2103982736927934 1.1361001055784703 0.9258323323244936 1.0825101237659576 1.0078628043394289 0.8841882109624275 1.0 17.017682886774978 2.752112833428785 24.434925334838695 0.9913668106633152 1.115852702676137 0.256871978682787 0.10327063971482732 825.3537015642793 1488127.7569742415 0.03148119939228703 0.03321499166358455 565.0837693489103 -2.752112833428785 0.12448589201282168 AEENTDQAS(ph)PQEDYAGFER ddPTM_BT-474_Trastuzumab_2h_R1 2 AEENTDQASPQEDYAGFER 19 0 Q9NU22 Q9NU22 MDN1 Midasin 1 AEENTDQAS(1)PQEDYAGFER;AEENTDQAS(1)PQEDYAGFER 365.2 8.368599999999995e-108 767700000.0 793730.0 898810.0 867350.0 894730.0 854990.0 940870.0 916120.0 846020.0 1006810.0 975330.0 True False 789456.6458716935 928726.3475078815 989465.3408586518 1008002.7262612655 963867.9085772368 875829.8714697487 871803.775681745 909154.3084025119 758695.166062809 913083.6043779774 0.864604995738038 1.017131775288595 1.083652511242613 1.1039544696982595 1.0556184602984469 0.9592000855895259 0.9547907458875536 0.995696674481257 0.8309153317670807 1.0 19.800387437712455 2.6834370225155704 7.017717149084448 0.9520419081392685 1.0321438234753852 0.2063302370879032 0.07455372198051566 0.42305426959587844 45.96944943897755 0.024844542159241027 0.02348979489347937 482.43301688478033 -2.6834370225155704 0.08010191533611677 AEEPGDRPAEEWLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEEPGDRPAEEWLGR 15 1 Q587I9 Q587I9 SFT2D3 Vesicle transport protein SFT2C 0 ;;; 152.07 2.6401e-06 1111230000.0 765710.0 1049530.0 1037610.0 907900.0 1008100.0 924990.0 920270.0 921770.0 1058000.0 1008760.0 False True 761587.502438379 1084462.9715957183 1183696.4689322028 1022840.0469109159 1136475.5595231669 861047.6184922484 875753.024327204 990557.1580532192 797270.0764736666 944380.0731571129 0.8064417326091511 1.1483331790031324 1.25341110277247 1.08308092894369 1.203409084780737 0.9117596219641952 0.9273311129908903 1.0488967167019247 0.8442258568717468 1.0 19.84900807481244 2.726842891815132 24.925660288902133 0.9561043517179353 1.109380740600779 0.2765718647193458 0.12223563527311657 976.2317318605499 2076612.696178352 0.039249142109756 0.03728140011738341 533.141993835125 -2.726842891815132 0.15327638888284367 AEEPPS(ph)PPVPK ddPTM_BT-474_Trastuzumab_2h_R1 6 AEEPPSPPVPK 11 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 AEEPPS(1)PPVPK;AEEPPS(1)PPVPK;AEEPPS(1)PPVPK;AEEPPS(1)PPVPK;AEEPPS(1)PPVPK;AEEPPS(1)PPVPK 182.71 5.9415e-06 5220560000.0 3846040.0 3581190.0 3327560.0 3246820.0 3278240.0 3968030.0 3933370.0 3828380.0 5327070.0 3989950.0 True False 3825333.3479752145 3700387.744274933 3796051.524329992 3657867.079096046 3695704.4323492018 3693729.4258379024 3743097.866167429 4114073.1557197366 4014284.97758088 3735307.9750319473 1.0241011915336105 0.9906513114874509 1.016261992238411 0.9792678685523276 0.9893975160957359 0.9888687761566195 1.0020854749293906 1.101401325732599 1.074686479512187 1.0 21.832795767019817 1.759336697332196 24.99999999999823 1.0681416509200878 0.9975518795225318 0.4966164334313844 0.027187544453404263 6.277936288477728 7560.821719255724 0.011722271114016638 0.006500677111945246 57.45617325025474 -1.759336697332196 -0.07058977139755607 AEEQQLPPPLS(ph)PPSPSTPNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 AEEQQLPPPLS(0.97)PPS(0.023)PS(0.006)T(0.002)PNHR 76.55 0.0070456 99407000.0 72147.0 84959.0 90348.0 89694.0 89728.0 111560.0 102880.0 93120.0 110270.0 111640.0 True False 71758.56856828534 87786.80895620001 103068.21308110631 101049.25120346689 101154.32894047686 103848.1197839925 97903.30136023436 100069.08725377887 83095.43604229785 104515.03962018738 0.6865860533475314 0.8399442728550977 0.9861567622770951 0.9668393330824413 0.96784471697161 0.9936189103633458 0.936738881944834 0.9574611234654331 0.7950572122851468 1.0 16.673351034199953 4.573861505551658 2.6876951344911615 0.9510521997777709 0.6753611663356719 0.6809195352099506 0.05602727288908668 0.18369304586439972 2.1489090472827086 0.01359331514279425 0.09400678425294853 37485.344419961875 -4.573861505551658 -0.275691033442099 AEEQQLPPPLSPPS(ph)PSTPNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 AEEQQLPPPLS(0.009)PPS(0.874)PS(0.088)T(0.028)PNHR 106.44 0.00023631 183920000.0 199770.0 202720.0 197370.0 212880.0 182290.0 233280.0 223790.0 208440.0 247980.0 226250.0 True False 198694.46051653355 209467.4126531721 225157.9804292061 239830.586172922 205503.55098251993 217153.90268205237 212964.4227391801 223994.85123687357 186868.65176175802 211810.53129762964 0.9380763992198963 0.9889376669323158 1.0630159843790818 1.132288298903889 0.9702234809739119 1.0252271279982503 1.0054477529256043 1.0575246181792675 0.88224438424724 1.0 17.692414796879177 -0.37801305512246763 7.629871641979063 0.999976108704354 1.014461971183172 0.0 0.06649575369406405 0.0 0.0 0.06254636253335208 0.014742319028628492 0.4187809761504471 0.37801305512246763 0.01448586247881789 AEEQQLPPPLSPPSPS(ph)TPNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 AEEQQLPPPLS(0.05)PPS(0.357)PS(0.46)T(0.133)PNHR 69.016 0.012684 222530000.0 63935.0 58881.0 60700.0 69056.0 67979.0 70885.0 69891.0 61211.0 73074.0 75754.0 True False 63590.781063846305 60840.818490683865 69246.03238614187 77798.48251952886 76635.72270689954 65984.88679534169 66510.10532045225 65778.87564316 55065.89184143349 70919.31486373756 0.8966637817360179 0.8578878491364695 0.9764058284994619 1.0969999170043978 1.0806043861837262 0.9304219438967122 0.9378278040085829 0.9275170772524488 0.7764583167115419 1.0 16.113890978286577 -0.8160613624939461 7.4255120210287044 0.9999972944921741 0.9475059731510626 0.032645548599856467 0.09030922033386611 0.0 9.28770800283526e-11 0.09256457748708474 0.02181768014626176 0.15273502400658878 0.8160613624939461 -0.05249132134111156 AEEVKS(ph)SDSFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEEVKSSDSFLK 12 1 D6REZ4;A0A1B0GWD8;Q9C093-2;Q9C093 D6REZ4 SPEF2 Sperm flagellar protein 2 1 AEEVKS(0.5)S(0.5)DSFLK 75.479 0.02041 105240000.0 67570.0 66949.0 53668.0 51866.0 42075.0 75719.0 60576.0 62935.0 106640.0 71699.0 True False 67206.21062773273 69177.35699347485 61223.9879093816 58432.2302820592 47433.001851936584 70484.72375335371 57645.707457207944 67631.52927745461 80360.00090278992 67123.10843539782 1.0012380563753969 1.0306041928921412 0.9121149085088365 0.8705233062663792 0.706656812498309 1.0500813415277281 0.8588056900357746 1.0075744531787605 1.1972032102793906 1.0 16.03452190731309 1.495492905399065 5.02233600421941 1.1014885283907818 0.9183994209645497 0.3274362551331147 0.10358282069523783 0.17963809948016224 9.996465982510879 0.06338305274128114 0.026674131003743218 31.29629345764089 -1.495492905399065 -0.18308910742623208 AEEWHGRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEEWHGRPK 9 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 0 ; 118.18 0.00061987 303590000.0 467120.0 505420.0 478880.0 443940.0 463820.0 500300.0 525940.0 481080.0 574340.0 517090.0 False True 464605.0778219107 522242.5991671575 546302.141500422 500142.7584818069 522884.72772347595 465715.43857952184 500498.2729140908 516980.63247474196 432801.60276170616 484088.87349697785 0.9597516143382527 1.0788155393751635 1.1285162114014846 1.0331630943484786 1.0801420076983865 0.9620453269567438 1.033897493446966 1.0679457033171604 0.8940540187078027 1.0 18.88491240950481 2.75449854529877 24.54719395523538 1.0052521151601388 1.0600922363979874 0.21028222598863977 0.059361847427020636 1201.4532079930582 1850445.2351624598 0.018262513666018887 0.019322313063408557 568.1964883408933 -2.75449854529877 0.05484012123784865 AEEYEFLTPVEEAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEEYEFLTPVEEAPK 15 0 P52565;J3KTF8;J3QQX2;J3KRE2 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ; 267.75 4.024e-25 164188000.0 377990.0 343680.0 289200.0 291880.0 294360.0 367150.0 376640.0 374430.0 520730.0 372590.0 False True 375954.9438386374 355119.1810410526 329916.84622853796 328831.9780728693 331845.00119158754 341769.7846781359 358420.4842954771 402371.8679170152 392403.0689245107 348810.9872096524 1.0778185252882249 1.0180848484213851 0.9458327241000637 0.9427225349275632 0.9513605171850064 0.9798137020056528 1.0275492958599064 1.1535527339199614 1.1249733618300772 1.0 18.41208595876962 1.9565623687726141 4.8130152235763175 1.1071960306846598 0.983174526098683 0.4395092508822741 0.053155424422175884 0.16612488272380282 8.700054766576331 0.024193579555131687 0.014781237273274914 90.48203691240391 -1.9565623687726141 -0.12402150458597672 AEFAER ddPTM_BT-474_Trastuzumab_2h_R1 5 AEFAER 6 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;A0A494C034;A0A2R8Y6A3;A0A494C0I0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A5F9UN72;K7EPB9;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ;;;; 138.48 0.028581 8509710000.0 4485780.0 5398200.0 4720920.0 4887320.0 4512290.0 4821730.0 5152250.0 4120460.0 5519130.0 5153600.0 False True 4461629.058897006 5577875.823719185 5385584.501027753 5506054.210891795 5086903.385061794 4488415.154231537 4903015.983993651 4427949.648471924 4159014.3640530263 4824692.835781058 0.9247488308081531 1.1561100392448498 1.1162543781206111 1.1412237832132235 1.0543476151136753 0.9303007065951211 1.0162338102918655 0.9177681977250876 0.8620267663899339 1.0 22.202005665404062 2.84545043312636 3.8863808028439677 0.9441311358507988 1.0925658995148846 0.46469041888637597 0.07166786212248386 0.20081258059267879 5.408854609336825 0.022180728173665946 0.02361010588178622 700.5682210891795 -2.84545043312636 0.1484347636640858 AEFEVHEVYAVDVLVSSGEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEFEVHEVYAVDVLVSSGEGK 21 0 Q9UQ80;Q9UQ80-2;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;; 176.73 2.9256e-14 88073000.0 180614.0 187433.0 165733.0 158009.0 163249.0 210666.0 204809.0 182431.0 221333.0 209925.0 False True 179641.5942921021 193671.59409935868 189066.76582293987 178012.92319897207 184037.79249736914 196103.15527442252 194901.6062236412 196044.92758584782 166788.44786025153 196527.40677416525 0.9140790958409832 0.9854686289221317 0.9620376563570159 0.9057918491924709 0.9364484858279932 0.997841260378354 0.9917273596735935 0.9975449775874168 0.8486778032537338 1.0 17.584370992315318 2.7693794377869794 24.10262226764596 0.9716015482553113 0.942487511708143 0.06860012784728775 0.047013845540830226 1196.2781492675279 935576.038591375 0.014320872876064808 0.015187480517411074 588.0028590945659 -2.7693794377869794 -0.029114036547168265 AEFFQHLIEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEFFQHLIEDR 11 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 0 ;;; 187.44 3.5878e-06 614501000.0 846543.0 1057895.0 987162.0 1001069.0 994312.0 987455.0 1027910.0 891770.0 1103380.0 987294.0 False True 841985.3065477689 1093106.3955639687 1126145.8290340798 1127804.2327580831 1120931.739451048 919194.5600690425 978186.0663024718 958318.4057163043 831466.7835345116 924284.0516550811 0.9109594664541242 1.1826520143959898 1.2183979881699054 1.220192245812925 1.2127567682725209 0.9944935849786383 1.0583175859746474 1.0368223967516037 0.899579281981156 1.0 19.817976764322392 2.7288456479743908 24.604084797591128 1.0081761533497948 1.158673205770826 0.39046118110204064 0.09359266682143058 597.2783280976171 1512660.9112251236 0.030585750353129146 0.029178063704053982 535.6062645698236 -2.7288456479743908 0.15049705242103117 AEFTS(ph)PPSLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEFTSPPSLFK 11 0 Q6UN15;Q6UN15-5;Q6UN15-3;A0A0B4J203;Q6UN15-4 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 AEFT(0.003)S(0.99)PPS(0.007)LFK;AEFT(0.001)S(0.791)PPS(0.208)LFK 139.89 4.076e-05 248724000.0 1452130.0 1316300.0 1190560.0 1148320.0 1181020.0 1517250.0 1414790.0 1366230.0 1946200.0 1557070.0 True False 1444311.8934268118 1360112.2497798465 1358180.4994669696 1293697.1942600964 1331415.8965460283 1412366.0787223268 1346351.2026773496 1468185.0201753678 1466585.087743905 1457696.4595253037 0.9908180019159472 0.9330558779176596 0.9317306703957138 0.8874942281751762 0.9133697813738271 0.9689027297097651 0.923615608640352 1.0071952981579442 1.006097722307356 1.0 20.475258903578393 1.7092295350882245 6.018585487905403 1.0049713146464136 0.933906822933604 0.5777655296483474 0.02688580498731909 0.10057131829995582 8.734367323307103 0.014197281765733866 0.007226423637147047 51.19523431864383 -1.7092295350882245 -0.0710644917128096 AEGAGRPPPAT(ph)PPRPPPSTSAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEGAGRPPPATPPRPPPSTSAVR 23 2 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 AEGAGRPPPAT(1)PPRPPPSTSAVR;AEGAGRPPPAT(1)PPRPPPSTSAVR 124.97 0.0026585000000000003 744480000.0 38118.0 36102.0 39012.0 56903.0 47019.0 52630.0 43031.0 36473.0 52849.0 46929.0 True False 37912.776923307945 37303.63324588014 44504.550501617276 64106.913965603984 53006.59094655277 48991.81197769386 40949.42613561663 39194.800466141285 39825.072090318354 43933.9510420617 0.8629494052790933 0.8490844178837047 1.012987665484702 1.459165689519456 1.2065063507674296 1.1151241992961172 0.932067914775347 0.8921301075019812 0.9064759973941435 1.0 15.423048628410351 2.2196228568737832 9.502707228014023 0.9203575485067044 1.0929811124587572 0.16509436334741656 0.16544934504235384 0.4818770861376186 220.34590171032002 0.06914375488774041 0.05212860234773348 165.8146340883379 -2.2196228568737832 0.1726235639520528 AEGDVAALNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGDVAALNR 10 0 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3 P67936 TPM4 Tropomyosin alpha-4 chain 0 87.806 0.029371 262470000.0 222530.0 193790.0 217610.0 186650.0 189240.0 262180.0 239410.0 241190.0 364560.0 284370.0 False True 221331.92320540716 200240.18300147098 248247.5964999727 210279.87086234428 213338.5922866425 244056.11370533478 227828.8236649855 259188.82253800376 274719.0728537242 266221.2631385941 0.8313833410450853 0.7521569864133146 0.9324859839265943 0.7898688045547779 0.8013582002109988 0.9167416262249488 0.8557874791029686 0.9735842264525307 1.0319201014034185 1.0 18.022266278592376 1.7919318585605415 1.1897274167260197 1.0244810713447172 0.8266209595978933 0.6812162076450246 0.05150553081676089 0.25455901208153203 0.6708024934352227 0.04088851104552622 0.016508646344819636 61.93438914903606 -1.7919318585605415 -0.19786011174682394 AEGDVAALNRR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGDVAALNRR 11 1 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3 P67936 TPM4 Tropomyosin alpha-4 chain 0 125.23 0.00053349 186960000.0 117830.0 200300.0 153480.0 173380.0 148750.0 164270.0 165830.0 129770.0 220680.0 183620.0 False True 117195.61637214362 206966.86441609287 175088.64992792506 195329.89022294793 167692.43078967475 152914.4015499863 157808.16936788138 139454.0963587078 166296.37096049983 171901.21439500886 0.6817614220155642 1.203987215241582 1.018542251397898 1.1362915085294436 0.9755162660127413 0.8895481168539444 0.9180166057771801 0.8112455566384691 0.9673949747578294 1.0 17.3912202111985 2.910902483322615 4.435164508049852 0.8988838513779634 1.027817442805111 0.07990007746005301 0.13639843549889646 0.40267574932441563 13.87908906371212 0.04008087310439595 0.04328259153464871 814.5213704927021 -2.910902483322615 0.12893359142714755 AEGEPQEES(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 5 AEGEPQEESPLK 12 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK 223.06 2.4464e-11 4341320000.0 9058230.0 6819600.0 6145320.0 5777080.0 6035960.0 8683780.0 8121000.0 7720910.0 12044810.0 8896480.0 True False 9009461.496143969 7046586.263464745 7010527.639921018 6508457.735662643 6804603.728062162 8083490.728019361 7728156.204767326 8297083.510186569 9076527.967685046 8328699.029740276 1.0817369512300556 0.8460608599617614 0.8417314174624024 0.7814495051894803 0.8170067982723538 0.9705586309644135 0.9278947620956742 0.9962040266504032 1.0897894059173476 1.0 22.989659728789707 1.96287565761123 1.3251103333193406 1.0399849576375908 0.8712893847938648 0.37062799852279915 0.0827827594852256 0.45642253774606767 1.4863429117132194 0.06130400155806174 0.02791045453873094 91.80697072953117 -1.96287565761123 -0.16869557284372605 AEGEPQEES(ph)PLKSK ddPTM_BT-474_Trastuzumab_2h_R1 6 AEGEPQEESPLKSK 14 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK 222.7 2.2978e-12 3974090000.0 2524980.0 1922320.0 1729840.0 1695660.0 1775050.0 2534160.0 2621370.0 2486780.0 4344490.0 2570510.0 True False 2511385.7882316485 1986303.2591330223 1973386.4359611783 1910330.3821400611 2001092.0959543688 2358979.483970983 2494564.3184941453 2672356.151212971 3273848.652683439 2406457.851075668 1.043602649059105 0.8254053808776083 0.8200378141171639 0.7938349642343241 0.8315508601407235 0.9802704347871863 1.0366125121946743 1.1104936452630778 1.360442964425932 1.0 21.198479724155472 2.1430450564931913 1.4868481425281534 1.1739305818678918 0.8566009409329635 0.584879017805166 0.10696083353561064 0.2674724221404739 1.133936597463776 0.06408352883122326 0.034778250639807745 139.00968412888164 -2.1430450564931913 -0.3173296409349283 AEGEWEDQEALDYFS(ph)DK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGEWEDQEALDYFSDK 17 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 AEGEWEDQEALDYFS(1)DK 242.18 2.2513e-20 116470000.0 377350.0 284820.0 243590.0 174500.0 211610.0 294300.0 223040.0 278570.0 365020.0 265680.0 True False 375318.3895275262 294300.0615226742 277885.35467776423 196591.68210811177 238557.27918926446 273955.7337076819 212250.7031044583 299358.3079497982 275065.7120174083 248724.07493990846 1.5089749137400665 1.1832391439943113 1.1172434946030099 0.7904006966579659 0.9591241991628664 1.1014443767611535 0.8533580963392382 1.2035759225242788 1.1059070662293706 1.0 17.924186632636594 4.685369141010122 1.773950838136536 1.015717452302106 1.6358797678290071 0.6252290089039296 0.11754247858495083 0.5366913167974818 1.8555469993619083 0.032040086678428066 0.5402656446006279 48458.40786770406 -4.685369141010122 0.6201623155269012 AEGEWEDQEALDYFS(ph)DKESGK ddPTM_BT-474_Trastuzumab_2h_R1 18 AEGEWEDQEALDYFSDKESGK 21 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(0.991)DKES(0.009)GK;AEGEWEDQEALDY(0.136)FS(0.861)DKES(0.003)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.043)FS(0.879)DKES(0.078)GK;AEGEWEDQEALDY(0.002)FS(0.997)DKES(0.001)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(0.995)DKES(0.005)GK;AEGEWEDQEALDYFS(0.998)DKES(0.001)GK;AEGEWEDQEALDYFS(0.999)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(0.997)DKES(0.003)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK 290.66 6.229999999999999e-55 31630201000.0 4845399.0 3013407.0 2539710.0 2449299.0 2729232.0 3930144.0 3893490.0 3939346.0 6313930.0 3788077.0 True False 4819311.910158443 3113706.430352 2897279.0924449502 2759380.0022677155 3076783.5177745586 3658462.3958438495 3705147.014123817 4233320.002113668 4757946.5538273845 3546318.6827241178 1.358961881693179 0.8780108921176241 0.8169821585857576 0.7780970209220136 0.8675992749222177 1.03162257065786 1.044786818560168 1.1937223867489055 1.3416579217783524 1.0 21.757890756245292 2.0866235240363262 1.8348945644785697 1.1969414329007915 0.9259036702758029 0.24867566441252864 0.1715206129884264 0.43764478532478884 2.814951431021031 0.0982237646191657 0.05376746973690319 122.07409801423236 -2.0866235240363262 -0.2710377626249886 AEGEWEDQEALDYFSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEGEWEDQEALDYFSDK 17 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 176.89 2.0616e-13 45925000.0 80318.0 83282.0 72282.0 68146.0 74267.0 94506.0 89158.0 90119.0 92125.0 84956.0 False True 79885.5768121688 86053.9910249679 82458.67731359322 76773.2766128332 83724.46223500362 87973.02266319467 84845.08692336484 96844.13739500953 69422.02816175469 79534.03534550917 1.0044200129558682 1.0819769253645304 1.0367722064570082 0.965288335733466 1.0526872158729346 1.1061053583038398 1.0667770917794321 1.2176439555003387 0.8728593722193746 1.0 16.279284750843704 3.000370759431321 24.997960080497283 1.0796612754243105 1.025131070735077 0.0 0.08740396201327995 36.84081032610978 2483571.2149756895 0.025122140795674344 0.029777119241875816 1000.8540696496003 -3.000370759431321 -0.05453020468923353 AEGFVDALHR ddPTM_BT-474_Trastuzumab_2h_R1 5 AEGFVDALHR 10 0 Q96I24;A0A494C1K6 Q96I24 FUBP3 Far upstream element-binding protein 3 0 ;;;; 156.48 1.0867e-05 5331140000.0 3091420.0 3918550.0 3492640.0 3551270.0 3346710.0 3483790.0 3613390.0 3111450.0 3979110.0 3544350.0 False True 3074776.138209054 4048976.5679364996 3984373.35342891 4000860.417880083 3772893.680995715 3242963.797259552 3438596.5212097317 3343642.198622963 2998511.657842281 3318146.5485292953 0.9266547131777194 1.2202524839450297 1.2007828150914273 1.2057515722605403 1.1370485377350128 0.9773419437115981 1.0363003776110562 1.0076837022478613 0.9036706528743625 1.0 21.661946174776336 2.7658120474174677 6.384211726231626 0.9914587208021379 1.1505558567025336 0.448289103508945 0.08423430000743241 0.17082054137528577 25.51538486138867 0.025833719981956434 0.02683959175790574 583.1926573904673 -2.7658120474174677 0.15909713590039565 AEGGGGGGRPGAPAAGDGK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEGGGGGGRPGAPAAGDGK 19 1 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;; 178.56 3.4399e-14 583801000.0 636304.0 502711.0 485159.0 430707.0 444644.0 611608.0 553617.0 519731.0 658127.0 528423.0 False True 632878.2099640201 519443.4317397832 553465.1701223751 485234.46203861694 501266.7777885327 569328.9785303697 526836.4306876828 558515.9663605428 495940.419299986 494698.59173430846 1.2793208239087221 1.0500200332463543 1.1187926939149826 0.9808688970338236 1.013277147264959 1.1508603178643038 1.0649644844160682 1.1290025395109862 1.0025102710750073 1.0 18.916190266998193 4.74103031176968 24.862284362564736 1.065136505801887 1.279320905559948 0.5750346012379826 0.05700017585083651 154.15775764352986 1551797.29094717 0.013408605823581417 0.09077355627667436 55084.61416065083 -4.74103031176968 0.21418439975806103 AEGGGGGGRPGAPAAGDGKTEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEGGGGGGRPGAPAAGDGKTEQK 23 2 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;; 142.99 9.3573e-08 375170000.0 361369.0 349427.0 313890.0 308397.0 280946.0 421620.0 446288.0 359346.0 633426.0 425322.0 False True 359423.4294558702 361057.46646191797 358082.98361921014 347440.0285793433 316722.80780259514 392474.4017867243 424699.34445427964 386162.22324201505 477326.64977354254 398177.58582351625 0.9026711755070437 0.9067749650326853 0.8993047232395517 0.8725755566094037 0.7954310314769345 0.9856767828229293 1.0666078643676307 0.969824111127072 1.1987783008587214 1.0 18.60305248572277 2.5194375268945337 5.416751300135284 1.045581615843916 0.8784858865412778 0.6480779621821311 0.0636900938940617 0.13153705351387862 9.65319760967361 0.020864964440960816 0.01911026480103276 330.70253719615056 -2.5194375268945337 -0.16709572930263816 AEGIEGETLTAS(ph)PQAPGSPEDS(ph)EGVPLISLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGIEGETLTASPQAPGSPEDSEGVPLISLPR 32 0 Q5T011-5;Q5T011 Q5T011-5 SZT2 Protein SZT2 2 AEGIEGET(0.042)LT(0.154)AS(0.803)PQAPGS(0.453)PEDS(0.546)EGVPLIS(0.001)LPR 56.021 0.0013706 0.0 16078.0 20518.0 19931.0 19899.0 19765.0 21628.0 20036.0 19554.0 20228.0 19786.0 True False 15991.43783443373 21200.929226607077 22737.1115566424 22418.211359709567 22281.95559366672 20132.907266835697 19066.782135047175 21013.218773200086 15243.080441313155 18523.240540353163 0.8633175064371775 1.1445583282482634 1.227491027129365 1.210274806444971 1.2029188707626584 1.086899844709993 1.0293437637712417 1.1344245477686514 0.8229165090258301 1.0 14.177048891891161 1.2514047645597395 24.94700458433086 0.9114582604303322 1.1192338209084722 0.35212720649081675 0.1087113353808273 202.45512653270657 393230.4233368399 0.07388215537267177 0.026594769593797956 17.840407274456897 -1.2514047645597395 0.20777556047814005 AEGIREPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGIREPK 8 1 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 0 69.825 0.048261 320790000.0 124390.0 157260.0 140050.0 127770.0 117730.0 185520.0 159000.0 119200.0 213890.0 168530.0 False True 123720.29806102812 162494.30403432238 159767.8226635779 143945.6688994468 132722.21765961975 172695.4390671056 151308.5625610154 128095.3092853354 161179.675479161 157774.27111420775 0.7841601624099468 1.0299163665075528 1.0126354667037385 0.9123519816184044 0.8412158504826581 1.0945728847138636 0.9590192462463538 0.8118897230880648 1.021584028504167 1.0 17.267502432878533 AEGLEEADTGASGCHSHPEEQPTS(ph)ISPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGLEEADTGASGCHSHPEEQPTSISPSR 29 0 Q9BV36-2;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 1 AEGLEEADTGASGCHSHPEEQPT(0.012)S(0.638)IS(0.342)PS(0.008)R 247.52 1.2803999999999999e-45 745880000.0 136850.0 200750.0 206660.0 209290.0 200720.0 213800.0 196230.0 58301.0 214500.0 129830.0 True False 136113.2148054643 207431.8423940623 235755.93167907858 235786.0925410126 226280.5022393517 199020.50923106517 186737.60522860388 62651.716666479355 161639.34915274254 121544.13824694484 1.1198665502808454 1.7066379784816677 1.9396733983179528 1.939921545718305 1.8617146454205047 1.6374340392023619 1.5363768909135176 0.5154647321550628 1.3298818970959756 1.0 16.89112079210635 1.9149138562099157 6.103024763778138 0.9147749597658084 1.7193888989305792 0.5787519017640652 0.28706808511361087 0.15343224810960304 8.818573119646404 0.1263839419753215 0.07712984097709019 82.20795714902724 -1.9149138562099157 0.8046139391647709 AEGLEEADTGASGCHSHPEEQPTSIS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 6 AEGLEEADTGASGCHSHPEEQPTSISPSR 29 0 Q9BV36-2;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 1 AEGLEEADTGASGCHSHPEEQPT(0.002)S(0.056)IS(0.826)PS(0.116)R;AEGLEEADTGASGCHSHPEEQPTS(0.002)IS(0.994)PS(0.004)R;AEGLEEADTGASGCHSHPEEQPTS(0.003)IS(0.877)PS(0.12)R;AEGLEEADTGASGCHSHPEEQPTSIS(0.995)PS(0.005)R;AEGLEEADTGASGCHSHPEEQPTS(0.01)IS(0.955)PS(0.035)R;AEGLEEADTGASGCHSHPEEQPTS(0.002)IS(0.889)PS(0.109)R 346.77 1.2977999999999991e-119 16101240000.0 3699240.0 4745500.0 4786120.0 5264260.0 5313520.0 5235110.0 4542210.0 1011711.0 5114790.0 3421770.0 True False 3679323.702864203 4903451.098784676 5459964.094299194 5930714.7762432555 5990165.276299514 4873219.167823394 4322485.94937276 1087210.0121843626 3854318.5391746173 3203389.7090753126 1.1485719931110951 1.5307070147890627 1.7044333003976786 1.8513872225540768 1.8699458449682755 1.5212695333375759 1.3493475168278806 0.3393936145528156 1.2032000128661215 1.0 21.611167889494144 1.953303457023941 5.951806218442044 0.7842332178214709 1.6154587335887434 0.5907867115309535 0.27995531916536914 0.1309149951366427 11.408435694099541 0.12295207826045473 0.07645244112514071 89.80560790931247 -1.953303457023941 0.8312255157672724 AEGNDHIER ddPTM_BT-474_Trastuzumab_2h_R1 3 AEGNDHIER 9 0 A0A0G2JP90;A0A087WW46;J3KN36;A0A0G2JN29;A0A087X117;Q5JPE7-3;Q5JPE7-2;Q15155;P69849;Q5JPE7;A0A087WTD5 A0A0G2JP90 NOMO1;NOMO3;NOMO2 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 0 ;; 133.12 0.00028578 320073000.0 261924.0 299459.0 282560.0 266055.0 348634.0 470912.0 310405.0 260807.0 417239.0 306307.0 False True 260513.8302864918 309426.31178821187 322341.99194445193 299737.5357207661 393030.4733843863 438358.96184761135 295389.524287748 280269.74269111146 314416.0391661586 286758.2250173839 0.9084790166723165 1.0790494737141498 1.1240897865263004 1.0452622089657424 1.370598780071818 1.528670927646581 1.0300995700117783 0.9773729861597549 1.09644994192267 1.0 18.129475341747177 2.043119526735424 24.999998514427105 1.017501667331965 1.1810925105690875 0.16535522469750352 0.1647127535447814 253.5988717174407 147031.46360855436 0.06714865707459168 0.049592533146062254 110.43825267676972 -2.043119526735424 0.16359084323712247 AEGPEVDVNLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGPEVDVNLPK 12 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 120.06 0.0004702 0.0 124620.0 111210.0 111880.0 113500.0 109630.0 132390.0 142770.0 152040.0 167110.0 128370.0 False True 123949.05976658365 114911.55762213527 127631.7315216071 127869.0883625829 123590.7306720811 123238.19091253818 135863.66966563623 163385.99684347666 125927.97965927645 120177.31669691378 1.0313848168134938 0.9561834194712575 1.062028467847167 1.0640035231030138 1.028403146858204 1.0254696501781937 1.1305267366576615 1.3595410626078033 1.0478514841271236 1.0 16.87480508947853 2.1147012147502604 4.635145332714845 1.1909188994717987 1.0283324212294889 0.1576352868623403 0.09675906241629155 0.2222568235483994 8.047238714053035 0.03693816088269388 0.026679292935899216 130.22705361093207 -2.1147012147502604 -0.16258647824230987 AEGPLDS(ph)PSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEGPLDSPSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK 42 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7;F8W1U7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 AEGPLDS(0.855)PS(0.044)EGHS(0.093)YQNS(0.007)GLDHFQNS(0.001)NIDQSFWETFGSAEPTK;AEGPLDS(0.991)PS(0.007)EGHS(0.002)YQNSGLDHFQNSNIDQSFWETFGSAEPTK 277.51 1.3517999999999993e-80 373940000.0 85410.0 95443.0 90566.0 99636.0 88185.0 111069.0 110234.0 73415.0 97236.0 91121.0 True False 84950.16204994309 98619.76255848803 103316.9055862163 112249.9073840908 99414.83703655443 103391.06145830297 104901.56028522614 78893.60009381633 73273.49069564603 85305.57976738697 0.9958335935537507 1.1560763414000168 1.2111388946413937 1.3158565675325833 1.1653966517505756 1.212008191494998 1.2297151085693796 0.9248351668079046 0.8589530824999926 1.0 16.38035248966821 1.692793490862293 5.5906262618034965 0.9167673464397488 1.1890626143434477 0.6656301859979807 0.08276990290380541 0.08319625726938114 5.950132455334191 0.0439952611072089 0.02194628435209009 49.29393531589833 -1.692793490862293 0.27229526790369896 AEGPLDSPS(ph)EGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGPLDSPSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK 42 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7;F8W1U7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 AEGPLDS(0.111)PS(0.299)EGHS(0.282)Y(0.265)QNS(0.02)GLDHFQNS(0.02)NIDQS(0.002)FWET(0.001)FGSAEPTK 46.449 0.059939 858550000.0 15263.0 15769.0 12772.0 15057.0 13024.0 18589.0 14795.0 12281.0 18974.0 15958.0 True False 15180.825703878725 16293.8616324382 14570.186583785897 16963.214656171014 14682.529200704043 17303.98618379918 14079.309327611449 13197.47058165441 14298.111938574048 14939.54677766884 1.016150351131839 1.0906530080814598 0.9752763454353882 1.13545711316538 0.982796159696827 1.1582671443329613 0.9424187719440561 0.883391630151831 0.957064638664033 1.0 13.86684876117542 2.097669046448387 9.580595548186531 0.9286698269492553 1.057160713646494 0.43423719580952613 0.0627232955723978 0.23146912595914673 20.66863766644869 0.0214711808591519 0.015852328520501446 125.21865840886304 -2.097669046448387 0.12849088669723874 AEGPLDSPSEGHS(ph)YQNSGLDHFQNSNIDQSFWETFGSAEPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGPLDSPSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK 42 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7;F8W1U7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 AEGPLDS(0.388)PS(0.109)EGHS(0.485)Y(0.015)QNS(0.002)GLDHFQNSNIDQSFWETFGSAEPTK 121.58 1.7558e-08 751240000.0 20942.0 21861.0 21173.0 21797.0 14861.0 20067.0 19781.0 17508.0 27947.0 23888.0 True False 20829.250598874925 22588.63016974645 24153.974360984892 24556.497965103244 16753.46026195199 18679.815522636945 18824.117459241774 18814.535863822595 21059.83632061395 22363.44738845427 0.9313971248291792 1.0100692338430988 1.0800648907759645 1.098064065819351 0.7491447973536233 0.835283362093847 0.8417359422393986 0.8413074932953362 0.9417079556118283 1.0 14.448854980381064 3.2467339731221125 24.999998755893937 0.8558497534406801 1.032065726579755 0.5174624823098262 0.07592648099055688 133.67986821133496 408886.6270474455 0.02086715569705062 0.02778037778144261 1764.9563663168626 -3.2467339731221125 0.1762159731390749 AEGS(ph)PNQGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEGSPNQGKK 10 1 Q9P2E9;A0A087WVV2;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 AEGS(1)PNQGKK;AEGS(1)PNQGKK 105.03 0.0015946 689640000.0 797470.0 527210.0 500550.0 488120.0 480400.0 567970.0 728370.0 638950.0 1039640.0 846370.0 True False 793176.5101272468 544757.8661448255 571023.0891414062 549915.9419519294 541576.092446117 528707.5707575672 693135.9604563944 686631.6935223578 783434.652462271 792353.9419861875 1.0010381322001092 0.6875183390635821 0.7206666855345316 0.6940281518300513 0.6835027425856586 0.6672618671300606 0.8747807308422242 0.8665719410711626 0.9887433013817556 1.0 19.595785496007824 1.6665119795787873 1.4829034462603092 0.9932560218306512 0.7370323193536202 0.4984238168388365 0.09607854789557363 0.30541182902562797 1.3102677139019843 0.07711432151253335 0.028544503727078344 46.39935886045389 -1.6665119795787873 -0.25622370247703097 AEGSDVANAVLDGADCIMLSGETAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGSDVANAVLDGADCIMLSGETAK 25 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 93.093 0.011672 30905000.0 26208.0 26879.0 22747.0 21938.0 18513.0 30089.0 25976.0 21726.0 33391.0 28168.0 False True 26066.899039982534 27773.65126630137 25949.579879531626 24715.348550646173 20870.520814852105 28009.01825188735 24719.441642043614 23347.30444239261 25162.235466476548 26370.29412416193 0.9884948160702762 1.0532173488673229 0.9840459024594336 0.93724205100923 0.7914405776661161 1.062142808116195 0.937397267002581 0.8853638238718207 0.9541886544003887 1.0 14.686626042109655 3.894012479156526 3.493445477606859 0.9300529893964935 1.0205860893595229 0.18708883252530661 0.06816241137105677 0.3451876171918494 7.758060591383974 0.017630966797520957 0.035314717498305795 7834.521544075268 -3.894012479156526 0.09053309996302938 AEGSEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGSEIR 7 0 P07237;H7BZ94;I3L3U6;I3L0S0;I3NI03;I3L514 P07237 P4HB Protein disulfide-isomerase 0 85.35700000000001 0.048554 422960000.0 345410.0 452220.0 392210.0 382280.0 440780.0 394440.0 414190.0 392340.0 450940.0 408470.0 False True 343550.3509386591 467271.8693272373 447429.7588495669 430676.6088039481 496910.7202922547 367173.2912118866 394154.04734054627 421618.40306215174 339811.8792864223 382401.0948912387 0.8984031571258199 1.221941766302048 1.1700535506490206 1.1262431372651789 1.299448999835067 0.9601784516760258 1.0307346202882872 1.102555428566613 0.8886268471147303 1.0 18.544727128487427 2.706480771608838 24.979735164523863 1.0138209152644122 1.1481395250937487 0.3058332311568579 0.10889043120918569 875.5123191476308 681737.5901124009 0.03430827966275215 0.03234847213942453 508.72229546294835 -2.706480771608838 0.13431860982933652 AEGTNFR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGTNFR 7 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 89.55 0.041389 206460000.0 128600.0 135080.0 136050.0 143920.0 144480.0 168050.0 156430.0 156770.0 141060.0 159040.0 False True 127907.63188880323 139576.0561424158 155204.6574322011 162140.25724355012 162878.67159994782 156433.09904714898 148862.88327936857 168468.97346192974 106297.65310715997 148889.93103900566 0.8590750965912828 0.9374445616866472 1.0424120445830627 1.0889941053238394 1.0939535700186296 1.0506627140969471 0.9998183372142875 1.1315001107616527 0.7139344639719961 1.0 17.18388666669617 4.451213614334448 3.0184342358620846 1.030796143773983 0.8650666520745873 0.15800536118204478 0.10985806531769075 0.4026863007900249 7.010038703932272 0.026250826166541015 0.11536085275574207 28262.69776788678 -4.451213614334448 -0.16572949169939566 AEGYEVAHGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEGYEVAHGGR 11 0 H0YDU8;P53041;A8MU39 H0YDU8 PPP5C Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 5 0 70.488 0.051628 267590000.0 105950.0 119730.0 113990.0 113070.0 100510.0 106120.0 113010.0 99165.0 109570.0 111820.0 False True 105379.57697215154 123715.14067168652 130038.80118115834 127384.65040667179 113309.35273055623 98784.17417961008 107543.27455987623 106565.19584966681 82567.9416627785 104683.55186608146 1.0066488487796104 1.181801137488644 1.242208530978325 1.2168544927634015 1.0823988172994885 0.9436456102099184 1.027317784339732 1.0179745905640696 0.7887384425817457 1.0 16.675675254763146 2.9473842829863197 3.666171070440407 0.968446849497792 1.1684690229648254 0.5586723604046744 0.08628256335095207 0.18495237352140637 5.021717589165497 0.027375482165757567 0.030373546869201223 885.8991459141943 -2.9473842829863197 0.20002217346703333 AEHDQLLLNYAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEHDQLLLNYAK 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 ;;; 179.35 2.0823e-05 1594140000.0 2269560.0 2345580.0 2250450.0 1939410.0 2083410.0 2531710.0 2279240.0 2178710.0 3107880.0 2379510.0 False True 2257340.9411318204 2423651.212366946 2567293.7987379422 2184939.1071478114 2348719.914161458 2356698.846704299 2168984.453657662 2341296.4034652123 2341984.6174583933 2227647.634598997 1.013329444958726 1.0879867959024103 1.1524685317658354 0.9808279699231366 1.05434983418473 1.0579316091561908 0.9736658616783911 1.051017390318408 1.0513263323532667 1.0 21.087089617073975 3.725185827213404 24.950247855322775 1.0272184911454112 1.0849341180100331 0.2937181403854935 0.04276124586462796 964.1610285834487 1798613.0646087732 0.011185066315027853 0.01742780054539474 5311.11649249599 -3.725185827213404 0.05771562686462195 AEHDSILAEK ddPTM_BT-474_Trastuzumab_2h_R1 6 AEHDSILAEK 10 0 P26639;P26639-2;D6RCA5;D6R9F8;D6RDJ6;D6RBR8 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;;;;; 143.5 3.3861999999999995e-05 4767730000.0 5483130.0 8850310.0 8685400.0 9530080.0 9288280.0 9814000.0 9671090.0 9731580.0 10106180.0 10418220.0 False True 5453609.437313007 9144887.218224619 9908228.82514985 10736587.150858885 10471087.402051238 9135581.279671066 9203262.429548495 10457799.915561955 7615647.354873952 9753320.280113105 0.5591541424547338 0.937617852750199 1.0158826471999083 1.1008135529754568 1.073592079550761 0.9366637224349537 0.9436030157149488 1.0722297243622025 0.7808261326557849 1.0 23.217462002157276 4.738490734690971 3.26184722873877 0.9987606226433532 0.49759303289660095 0.6837955390378494 0.08728093380096802 0.17939619098703455 3.070301571255478 0.02083115621054322 0.22733274141889273 54763.441751563834 -4.738490734690971 -0.5011675897467522 AEHLDHVMFR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEHLDHVMFR 10 0 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A494C099;A0A494C163;D6RCQ8;D6RF77;D6RC77;D6RCD1 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ;; 183.72 9.4682e-07 501582000.0 606600.0 773900.0 747130.0 695030.0 641310.0 687210.0 687660.0 185663.0 751060.0 497597.0 False True 603334.1329995961 799658.7936675712 852319.4098296246 783020.7267369695 722977.0271578239 639704.7902183363 654395.2586836969 199518.11583761114 565971.3266883853 465839.9334457751 1.2951533127200774 1.7165956292166038 1.8296400729862214 1.680879354728216 1.5519859403422747 1.3732287515295196 1.404764194093871 0.4282975793032469 1.2149480670365624 1.0 18.829474792205367 1.9240470965495993 6.187597489863124 0.8326825537320518 1.580851528095748 0.6330662562589623 0.23550734441379365 0.13525592837150976 8.754078236742565 0.10310516729801017 0.06319070142501101 83.95510256974576 -1.9240470965495993 0.7481689743636962 AEHLES(ph)PQLGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEHLESPQLGGK 12 0 Q9NYD6;D6RAG4 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 AEHLES(1)PQLGGK 113.11 0.00077398 163110000.0 182360.0 180860.0 183650.0 185130.0 189620.0 229600.0 198520.0 176380.0 242740.0 223860.0 True False 181378.19402210077 186879.8157678213 209506.3236855842 208567.43901819357 213766.98303420588 213728.29242026413 188916.82917995454 189542.37123949217 182919.97954935502 209573.06314381157 0.8654652048371162 0.8917167739232886 0.9996815456279248 0.995201558298893 1.0200117316008137 1.0198271152509766 0.9014365985113151 0.9044214385005477 0.8728219972804097 1.0 17.67709377067182 -0.7090019622754602 7.15167704856683 1.0000000000000961 0.9430944199393645 0.0818624515480536 0.05878484544347072 0.0 0.0 0.06228084072070835 0.014679734827831503 0.19543306254912188 0.7090019622754602 -0.05690558006073165 AEHSVDIDVDIDWPIAEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEHSVDIDVDIDWPIAEQR 19 0 Q8NFW8;Q8NFW8-2 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase 0 ; 282.19 9.7798e-40 199116000.0 137074.0 177916.0 158468.0 187892.0 169158.0 168731.0 169766.0 154951.0 179733.0 181055.0 False True 136336.00881435297 183837.82650750698 180778.91697145175 211679.10793499913 190699.26862198196 157067.0231200508 161553.77001090132 166514.23044523495 135440.21044881048 169499.9148910159 0.8043426387677747 1.084589491538742 1.066542818547655 1.2488449216691546 1.1250699963159079 0.9266495692404381 0.9531200656636096 0.9823853336581279 0.7990576900047122 1.0 17.370925023395245 2.728580214700475 23.849889878885364 0.937182287086317 1.0771192685877917 0.24982956034969495 0.11480264401245481 534.3810147864551 1276992.0994305606 0.03770012810373155 0.035969357822574585 535.2790113030206 -2.728580214700475 0.1399369815014747 AEIDYSDAPDEFRDPLMDTLMTDPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEIDYSDAPDEFRDPLMDTLMTDPVR 26 1 O95155-2;O95155;O95155-4 O95155-2 UBE4B Ubiquitin conjugation factor E4 B 0 ; 124.14 0.00011121 103255000.0 80751.0 104631.0 102795.0 94488.0 90255.0 90221.0 90575.0 87877.0 93443.0 100863.0 False True 80316.24558827952 108113.57958422479 117267.6424898428 106450.17111192716 101748.43926670332 83984.23462738968 86193.54121989907 94434.82797036423 70415.22472204993 94425.83698684128 0.8505748866115107 1.1449575988327323 1.2419020707879416 1.1273415678249326 1.0775487145629694 0.8894200708974739 0.9128173386687647 1.0000952174088136 0.7457198894817596 1.0 16.526894046262697 2.806253224495105 4.973887690075231 0.9174399632075795 1.1047412179466718 0.37755271302880355 0.11393881902076707 0.23339545381362328 11.300120648979666 0.035506890723169496 0.037467270996511634 640.10795504641 -2.806253224495105 0.18730125473909232 AEIIADK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEIIADK 7 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ; 103.92 0.019235 152460000.0 526380.0 504200.0 436300.0 443170.0 448330.0 548440.0 531850.0 483350.0 699220.0 570800.0 False True 523546.0285663162 520981.9922046638 497727.2476124173 499275.27656075585 505422.16803989914 510527.6336888932 506122.3836356986 519420.0314015683 526906.6000679741 534371.0553135332 0.979742490466918 0.9749442583468269 0.9314262864039001 0.9343232040661607 0.9458262437948688 0.9553804020866171 0.9471365984423311 0.9720212691849626 0.9860313256653105 1.0 19.02748233949701 1.3368351818665292 1.7131252876049259 0.9985936966748923 0.9516990169429309 0.5513931821117366 0.014714925515640404 0.2734392187582279 1.4388355604896914 0.014529223809221937 0.0044362071825104245 21.718767783119716 -1.3368351818665292 -0.046894679731961375 AEIIHHLADLLTDQRDEILLANKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEIIHHLADLLTDQRDEILLANKK 24 2 P54886-2;P54886 P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase 0 211.75 8.6839e-26 102600000.0 116150.0 115820.0 133880.0 95319.0 143180.0 264680.0 141080.0 81604.0 214970.0 167590.0 False True 115524.66130547806 119674.9986853314 152729.140294179 107386.37562672274 161413.12430565158 246383.29458970224 134255.42142206326 87693.70485671567 161993.52395041962 156894.2627189825 0.736321770493274 0.7627748562079959 0.9734526785580186 0.6844506214931858 1.0288019555868841 1.5703779750761564 0.8557063789039356 0.5589350645267775 1.032501260040149 1.0 17.25943307149611 4.255149079709775 1.191281887758633 0.9482945211332711 0.7064318226508612 0.09884133200056011 0.25208790611261206 2.396377305025243 4.974100375078304 0.0860107003643948 0.588777600928098 17994.88517236262 -4.255149079709775 -0.24186269848240982 AEISFEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEISFEDR 8 0 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 ;;; 182.09 0.00053604 2348060000.0 2096860.0 2366590.0 2132960.0 2073740.0 1943580.0 2415590.0 2216640.0 2097870.0 2391000.0 2267820.0 False True 2085570.7387430451 2445360.517516134 2433262.22797933 2336275.2713746466 2191083.392498798 2248605.9489872223 2109412.6548128882 2254423.7121680067 1801770.087758539 2123085.786021618 0.9823299428004408 1.1517954355007085 1.1460969895799364 1.1004149181143157 1.0320277244211589 1.0591215690821483 0.9935597839245339 1.0618618084163705 0.8486562811646051 1.0 21.017731235700545 2.0976838618863947 0.8230948953535111 0.9551196489245004 1.09767372418833 0.38653771426360184 0.06643623970089674 0.6510939973974593 0.8254002338278894 0.05397402623125255 0.029048105890733977 125.22293016683406 -2.0976838618863947 0.14255407526382968 AEISFEDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEISFEDRK 9 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 ; 207.83 1.77e-05 4576000000.0 2817100.0 2650600.0 2238000.0 2268400.0 2279300.0 3009200.0 3056800.0 2665900.0 4301500.0 2904700.0 False True 2801933.0466092364 2738823.618678464 2553090.946955279 2555579.2074157074 2569555.3445304628 2801181.086894862 2908930.9058900126 2864842.9951659036 3241452.9621469523 2719319.559161219 1.0303802056546454 1.007172404380183 0.9388712475347276 0.9397862780805293 0.9449258495103271 1.0301036807012462 1.0697274971196398 1.053514650572944 1.1920088432515032 1.0 21.37481426806731 2.435497811666068 2.6113264410017485 1.0811355858783167 0.9707337544705893 0.4772924495540559 0.052437864872212435 0.24312780677536464 3.3854865333626565 0.02019661574704174 0.016635369074522448 272.5824003943545 -2.435497811666068 -0.11040183140772741 AEITFDDHK ddPTM_BT-474_Trastuzumab_2h_R1 7 AEITFDDHK 9 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 ;;;;;; 190.02 3.7544e-05 3414050000.0 3284578.0 3011753.0 2760461.0 2646548.0 2485135.0 3483652.0 3618403.0 3020424.0 4756170.0 3417572.0 False True 3266894.1969989194 3111997.377961869 3149109.9144428624 2981600.705443318 2801602.21170083 3242835.336874731 3443367.0232482105 3245823.3762822957 3584075.6329128128 3199459.629029402 1.0210768616542834 0.9726634303261811 0.984263056758177 0.931907587890967 0.8756485583631923 1.0135571980504994 1.0762339340074127 1.0144911180726348 1.1202128010598118 1.0 21.609396831827414 2.485301996738913 23.85675554940511 1.0498093614128443 0.956735911078533 0.48498714124396036 0.04661120583143142 186.5565934929315 544041.910560115 0.015800422221864393 0.013822996690296633 305.70461622180443 -2.485301996738913 -0.09307345033431136 AEKDEPGAWEETFK ddPTM_BT-474_Trastuzumab_2h_R1 4 AEKDEPGAWEETFK 14 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 250.17 2.4844999999999998e-18 4218790000.0 2415620.0 2051390.0 1974120.0 1617930.0 1797930.0 2488180.0 2624580.0 2515150.0 3669250.0 2305070.0 False True 2402614.570320612 2119669.276058559 2252058.93664136 1822759.7721099018 2026885.7283339843 2316177.9731457005 2497619.038530749 2702843.264672916 2765012.502931 2157958.459130289 1.1133738743464623 0.982256756190218 1.0436062506731458 0.8446686099993413 0.9392607720312047 1.0733190731017028 1.1573990351683374 1.2525001365235868 1.2813094205925397 1.0 21.041235662424636 2.3449705847804854 2.6029421945222837 1.2038318020527645 0.9812501208610287 0.44712314818608234 0.09655830359289926 0.21919399181602664 3.0389112803503795 0.03832450839545707 0.029599561575838367 221.29448194623095 -2.3449705847804854 -0.22258168119173583 AEKDNAEIR ddPTM_BT-474_Trastuzumab_2h_R1 6 AEKDNAEIR 9 1 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;;;;; 107.45 0.002527 4785890000.0 10068600.0 10519400.0 9515350.0 9265810.0 9663310.0 10847400.0 12006500.0 11466900.0 15485300.0 12665900.0 False True 10014391.776326627 10869531.869888414 10855028.57109514 10438860.595955104 10893875.249574278 10097544.77003299 11425699.725715924 12322618.30573837 11669155.307389094 11857551.418177435 0.8445581573422254 0.9166759212383087 0.9154527936058162 0.8803554990242335 0.9187289066167693 0.8515708187909367 0.9635800278462643 1.0392211571478405 0.9841117188410811 1.0 23.499302788634775 2.0383564969604895 5.208347662380878 1.01008891548783 0.8919261222218872 0.796920948866184 0.02752127991996174 0.07361282900730064 4.9170523529513215 0.010308677536183994 0.007284165617787994 109.2336628986758 -2.0383564969604895 -0.11816279326594292 AEKEEENR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEKEEENR 8 1 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ;; 125.97 0.0011302 1906360000.0 2783670.0 2567960.0 2131360.0 2058500.0 2176190.0 1806100.0 2736700.0 2716210.0 3872000.0 3094140.0 False True 2768683.03001481 2653432.9962354014 2431436.961886778 2319105.8889372386 2453314.897211311 1681248.5581020862 2604315.365790761 2918907.3828349053 2917797.4821418114 2896669.3361734743 0.9558160454973659 0.9160289588802738 0.8393905826678607 0.8006111916111205 0.8469433727123861 0.5804074828654866 0.8990723702109142 1.0076771091486776 1.0072939447055589 1.0 21.465963575199353 1.9065996577350788 4.686930542628117 0.9997105452200337 0.822157856041189 0.42620081043868896 0.09364547280267421 0.23081899007659865 8.197325689163849 0.04566104228839592 0.0267465590994459 80.64912460038502 -1.9065996577350788 -0.1775526891788447 AEKEEENRR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEKEEENRR 9 2 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ;; 112.75 0.0010755 495693000.0 854220.0 778690.0 737140.0 713360.0 714380.0 737030.0 928770.0 800670.0 1188730.0 876530.0 False True 849620.9744327638 804608.2259219545 840922.9046642608 803671.3028575514 805352.0585380024 686080.8508820003 883841.8468540509 860420.0611198789 895783.419665918 820589.1049649122 1.0353793016409754 0.9805251142791604 1.0247795145905796 0.9793833454465811 0.981431576004703 0.8360833049463124 1.0770821127241792 1.0485394650184514 1.091634551624008 1.0 19.646300474003066 AEKPPLSASS(ph)PQQRPPEPETGESAGTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEKPPLSASSPQQRPPEPETGESAGTSR 28 2 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 AEKPPLS(0.004)AS(0.138)S(0.858)PQQRPPEPETGESAGTSR 122.45 2.4045e-05 256500000.0 187520.0 170730.0 149780.0 140060.0 156970.0 191450.0 188650.0 197760.0 213560.0 209250.0 True False 186510.41315543058 176412.64484153577 170867.72208890182 157791.5816393245 176959.19906591796 178215.51212482422 179524.27878701576 212517.8554049323 160930.99955738787 195895.4858520621 0.9520914294895033 0.9005447168637692 0.872239201152083 0.8054886050742731 0.9033347465676438 0.90974792680731 0.9164288702527343 1.0848532546861402 0.8215145890544973 1.0 17.579724627458955 1.9829716703076827 23.0042685893624 0.9838233456016263 0.8890884631873911 0.19125018584866293 0.06986850692065667 332.4048632136395 449058.16639273806 0.027659391218710958 0.01836294282226033 96.1549552992012 -1.9829716703076827 -0.09473488241423522 AELAESR ddPTM_BT-474_Trastuzumab_2h_R1 2 AELAESR 7 0 P06753-2;A0A087WWU8;P06753-6;P06753-3;J3KN67;A0A2R2Y2Q3;A0A494C0P6 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ; 135.84 0.0070675 1058620000.0 1324520.0 1755150.0 1508930.0 1471470.0 1346790.0 1465190.0 1605320.0 1312350.0 1769360.0 1602810.0 False True 1317388.9314880047 1813569.1067394202 1721374.2281453218 1657757.9511267813 1518295.72345026 1363904.8639862682 1527664.5386820703 1410284.2209782724 1333324.9362093064 1500517.29356532 0.8779565134886308 1.2086292604001052 1.1471871970600434 1.104790966579164 1.0118482005913423 0.9089564444442673 1.0180919241871893 0.9398653564514086 0.8885768540802655 1.0 20.51702851551606 3.068137341333465 3.6533686985538396 0.952545473170024 1.0976234088630656 0.33749904976127765 0.08718389205112828 0.24065736875776544 6.480408869522037 0.025446057774243972 0.03050190622392665 1169.8692921182262 -3.068137341333465 0.14507793569304162 AELAESRCR ddPTM_BT-474_Trastuzumab_2h_R1 1 AELAESRCR 9 1 P06753-2;A0A087WWU8;P06753-6;P06753-3;J3KN67;A0A2R2Y2Q3;A0A494C0P6 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 58.981 0.096011 128320000.0 20617.0 73823.0 76934.0 102020.0 88048.0 38462.0 42186.0 28244.0 11345.0 36742.0 False True 20506.000362764044 76280.15392805405 87765.63847768438 114935.7215396538 99260.390898617 35803.21246980928 40145.30201383013 30351.71070012597 8549.176765211481 34397.0941035912 0.5961550211482293 2.2176336669117083 2.5515422382299815 3.3414369595731066 2.885720247172095 1.0408789871023227 1.1671131838325493 0.8823917104368746 0.24854357578766842 1.0 15.069999069493717 2.655678512624556 5.948206823300363 0.8721500787703994 2.379990314883266 0.5161362732158921 0.7018777341563832 0.19900505079669348 11.371721956262256 0.24236175410224683 0.22842690942713723 452.56244560419157 -2.655678512624556 1.5078402361128664 AELDDTPMR ddPTM_BT-474_Trastuzumab_2h_R1 2 AELDDTPMR 9 0 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 149.65 0.00020266 1287540000.0 2704400.0 3307800.0 3013300.0 3212000.0 3033700.0 3173100.0 3287700.0 2925500.0 3712100.0 3195700.0 False True 2689839.8108870885 3417898.1233926755 3437546.4479268775 3618638.870666219 3420023.7128513413 2953751.0656739604 3128661.3907663506 3143815.665387996 2797302.6945915846 2991747.690023578 0.8990864503235866 1.1424419695518304 1.1490094767649963 1.2095401235649323 1.143152453749998 0.9872995224576181 1.045763785896562 1.0508291444066327 0.9350062185790605 1.0 21.512557079542834 2.739207435331516 24.999215487263218 1.0140230292452002 1.1183712791116858 0.2802464802270339 0.0824902507281582 80.50931095015454 3111675.099339278 0.02630542875288989 0.026412930400253453 548.538905112092 -2.739207435331516 0.10434824986648561 AELDELRR ddPTM_BT-474_Trastuzumab_2h_R1 1 AELDELRR 8 1 O00291-3;O00291-4;O00291 O00291-3 HIP1 Huntingtin-interacting protein 1 0 147.36 0.0015871 0.0 83109.0 104110.0 99497.0 97673.0 91211.0 109760.0 109790.0 85117.0 118630.0 118490.0 False True 82661.55037827785 107575.238414176 113505.31275657266 110038.39178536166 102826.18020004734 102172.54954724833 104479.03826147095 91468.8627553683 89395.22606055855 110927.8667556073 0.7451829084606406 0.9697765003556977 1.0232353337024311 0.9919815011659305 0.926964370698579 0.9210719770925695 0.9418646668078076 0.8245796609150481 0.8058861012581376 1.0 16.75926231225265 1.753478219496825 24.999999999895657 0.8599175359925464 0.9382024124831893 0.06548098016522663 0.08520601897074666 9.589835058801924 16092.205161527878 0.038754406214285414 0.02149129290367157 56.6863141795025 -1.753478219496825 0.07828487649064286 AELELELGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AELELELGR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 180.45 0.00011314 355833000.0 627960.0 765030.0 675010.0 659250.0 627400.0 691800.0 697670.0 600380.0 784710.0 668790.0 False True 624579.1331329142 790493.5610795986 770045.5407079009 742710.982405574 707295.6711088539 643977.4943220334 663921.0367417836 645183.4042678671 591328.7350752838 626107.2496200748 0.9975593374967502 1.262552959671485 1.2298939856952122 1.1862360368072002 1.1296717479921288 1.028541826840054 1.0603950635368853 1.030467870575477 0.9444527841421821 1.0 19.256050280543718 2.8175162467199426 2.041475727501496 1.0148897712306697 1.1806726210090945 0.52615423098751 0.07091010361854393 0.256764256116471 2.11209600636857 0.02489246298499447 0.02593870767146832 656.9256912487826 -2.8175162467199426 0.16578284977842483 AELEQHLEQEQEFQVNK ddPTM_BT-474_Trastuzumab_2h_R1 1 AELEQHLEQEQEFQVNK 17 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 211.17 2.7160000000000005e-12 149320000.0 174370.0 160020.0 161040.0 133650.0 132780.0 204850.0 146150.0 159300.0 227970.0 180080.0 False True 173431.21129432833 165346.1689658671 183713.032215227 150570.07629655668 149688.74595128075 190689.2016650311 139080.1661527822 171187.77490900972 171789.84814149496 168587.14022575555 1.0287333367307023 0.9807756911022487 1.0897215052655638 0.8931290731601939 0.8879013295488144 1.1311017044934664 0.8249749415438185 1.0154260561023318 1.0189973441120757 1.0 17.363134966588042 3.7446392298632913 24.99223852648834 0.9657546900068216 1.0278467218049752 0.11213338259390992 0.08426976130815422 1176.7622565565275 4838245.640649855 0.020952140473062444 0.0365919448839754 5554.4265716735945 -3.7446392298632913 0.06209203179815359 AELGMGDSTSQS(ph)PPIK ddPTM_BT-474_Trastuzumab_2h_R1 7 AELGMGDSTSQSPPIK 16 0 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 1 AELGMGDSTSQS(1)PPIK;AELGMGDST(0.001)S(0.004)QS(0.995)PPIK;AELGMGDSTSQS(1)PPIK;AELGMGDSTSQS(1)PPIK;AELGMGDSTSQS(1)PPIK;AELGMGDSTSQS(1)PPIK;AELGMGDS(0.009)T(0.009)S(0.009)QS(0.974)PPIK 270.94 4.0541999999999996e-35 1658655000.0 2662970.0 2337400.0 2173530.0 2010780.0 1984040.0 2811180.0 2776220.0 2385790.0 3046770.0 2839240.0 True False 2648632.865403781 2415198.946011862 2479544.1313385656 2265344.5418300843 2236695.73367359 2616849.743405917 2641923.6324097 2563829.7645961433 2295934.358126343 2658037.272404342 0.9964618979958645 0.9086399845052513 0.9328477659365855 0.852262142953682 0.8414839614533978 0.9845045329401388 0.9939377674790595 0.9645574918056048 0.8637705655833574 1.0 21.341929904312938 2.7070715132733874 24.99900910227529 0.9623673049583306 0.9049353728612287 0.2088897785551359 0.05347856665653854 1090.8940197042537 866053.3188292796 0.017808932652870608 0.016791741705594 509.4147471329654 -2.7070715132733874 -0.057431932097101845 AELGMGDSTSQS(ph)PPIKR ddPTM_BT-474_Trastuzumab_2h_R1 17 AELGMGDSTSQSPPIKR 17 1 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 1 AELGMGDS(0.118)T(0.118)S(0.227)QS(0.537)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDS(0.002)T(0.002)S(0.011)QS(0.985)PPIKR;AELGMGDS(0.002)T(0.002)S(0.066)QS(0.93)PPIKR;AELGMGDS(0.003)T(0.003)S(0.099)QS(0.896)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDS(0.197)T(0.176)S(0.157)QS(0.47)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDST(0.01)S(0.01)QS(0.98)PPIKR;AELGMGDSTSQS(1)PPIKR 284.98 1.8466e-36 42903914000.0 6513914.0 6241768.0 5793363.0 5308250.0 5387949.0 7552785.0 7580178.0 6700491.0 8739683.0 7592133.0 True False 6478843.810787882 6449521.474651563 6609018.153586091 5980273.905732864 6074072.368274269 7030678.750293488 7213495.831047996 7200515.662823875 6585905.230402276 7107596.571987919 0.9115379221609111 0.907412429691082 0.9298527408875739 0.8413918608298621 0.8545887919712662 0.9891780827857373 1.014899447089814 1.0130732083475538 0.9266008788903826 1.0 22.760930365475524 2.7236395562976727 23.275285175620887 0.9936826376542769 0.8896115747927673 0.6857011639285057 0.03369723041678501 188.99979621334705 294818.96608653996 0.011444241863729016 0.010839343661295657 529.2240308715217 -2.7236395562976727 -0.10407106286150958 AELMEISEDKTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AELMEISEDKTK 12 1 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 SSB Lupus La protein 0 152.74 6.3896e-05 612050000.0 422350.0 333540.0 268160.0 275430.0 248780.0 385070.0 323280.0 352270.0 547820.0 375920.0 False True 420076.1145274961 344641.6772708125 305914.59711149626 310299.40975952614 280460.6583654137 358451.01725727913 307641.7113504719 378558.176190815 412817.1014119127 351928.463758696 1.1936406337838203 0.9792946941260205 0.8692522163289705 0.8817116025383122 0.7969251914721935 1.018533748105852 0.8741597882273318 1.0756679699837464 1.1730142455739692 1.0 18.424922677535 1.6253574571231175 5.9194651190636645 1.098151572014972 0.9383170636089628 0.24610853205616856 0.10989416516926376 0.17547255989323318 13.034029104988226 0.05942916667829491 0.028622274098010585 42.204373434400196 -1.6253574571231175 -0.1598345084060091 AELNEFLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 AELNEFLTR 9 0 P23396;P23396-2;E9PPU1;E9PL09;F2Z2S8;H0YCJ7;H0YEU2;H0YF32;E9PQ96;E9PJH4;E9PK82;E9PQX2;H0YES8 P23396 RPS3 40S ribosomal protein S3 0 ;;; 164.34 0.00014501 2781590000.0 1933310.0 2634640.0 2375270.0 2385700.0 2407650.0 2154480.0 2123840.0 2026670.0 2627630.0 2187700.0 False True 1922901.2737709328 2722332.3997264877 2709687.3697830546 2687729.3753886656 2714249.9562404114 2005545.8687003977 2021101.745343311 2177910.4066217355 1980085.7949380907 2048079.113015799 0.938880369196021 1.3292125203688299 1.3230384278432665 1.3123171650488543 1.3252661672056578 0.97923261653073 0.9868279660189669 1.0633917375460948 0.966801420098666 1.0 20.96584001403275 2.733098371053447 24.9079575956545 1.0070823525834063 1.25837289443009 0.5473759405547844 0.11166439596880148 327.3034366212451 1492506.046455556 0.0354073385218936 0.0342693162606555 540.8768218479769 -2.733098371053447 0.25129054184668376 AELNPWPEYIYTR ddPTM_BT-474_Trastuzumab_2h_R1 6 AELNPWPEYIYTR 13 0 P26639;P26639-2;D6RCA5;D6R9F8;D6RDJ6 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;;;;; 197.07 3.1816e-07 1425607000.0 687423.0 806052.0 759976.0 810543.0 783140.0 726305.0 775122.0 665946.0 875269.0 787675.0 False True 683721.9909478745 832880.9535512761 866974.0149701901 913157.6606931544 882868.2369655534 676097.2448880671 737626.38760641 715642.2721252681 659570.6829537144 737404.9071375047 0.927200218401015 1.1294757405187268 1.1757095817759788 1.238339549756857 1.197263848423135 0.9168602464453014 1.00030035122734 0.9704875370348215 0.8944484591431171 1.0 19.492097491464403 2.7360747747693157 24.988069842874943 0.9596088384200331 1.141527317880988 0.5302308302308396 0.08319126223376888 179.55116470312043 1804864.3364227887 0.027426962233707695 0.02696681618442074 544.5964108044013 -2.7360747747693157 0.18191847946095485 AELNSDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AELNSDKK 8 1 Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 Q10567-4 AP1B1 AP-1 complex subunit beta-1 0 ; 144.77 0.0009301 952290000.0 1521600.0 1174860.0 1191520.0 1019290.0 1011400.0 1115720.0 1420800.0 1314220.0 2257780.0 1546650.0 False True 1513407.8746656536 1213964.5048821333 1359275.6591225003 1148332.0094898422 1140195.7949625344 1038592.902522376 1352070.4760169212 1412293.7698739409 1701380.3717019998 1447941.4728463169 1.0452134309618502 0.8384071646872306 0.9387642281220662 0.7930790235826922 0.7874598637755531 0.717289284131591 0.9337880718058752 0.9753804254930961 1.1750339386007647 1.0 20.465571857835858 1.6357939611740773 2.466749591962756 1.0831899944636854 0.8521690530699003 0.4617388361015913 0.09626171173341318 0.21232275838488468 2.91737597673706 0.06673621604565914 0.02642989757414123 43.23086856554872 -1.6357939611740773 -0.23102094139378504 AELPGSSS(ph)PLLAQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AELPGSSSPLLAQPR 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 AELPGSS(0.048)S(0.952)PLLAQPR;AELPGS(0.023)S(0.373)S(0.605)PLLAQPR 323.28 7.980899999999997e-57 288580000.0 496250.0 615460.0 557510.0 588130.0 535030.0 599070.0 600710.0 540860.0 596700.0 571940.0 True False 493578.2451385584 635945.2140465733 636002.5620362096 662587.1976976728 603162.8991287376 557657.700959093 571651.3623649534 581221.7196314307 449651.2803703557 535438.29953753 0.9218209559623823 1.1877096102311944 1.1878167149894565 1.2374669467424426 1.12648441407666 1.0414975944768134 1.0676325598275307 1.0855064348841776 0.8397816905490876 1.0 19.030360812101822 1.3655416802455211 5.215757060346654 0.9219990231375096 1.115068998981456 0.3993131315384224 0.0916666491753119 0.19952207632170504 7.579863786869619 0.06573690794081544 0.02326340076468222 23.202868581785633 -1.3655416802455211 0.19306997584394636 AELRDDPIISTHLAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AELRDDPIISTHLAK 15 1 O00231;O00231-2 O00231 PSMD11 26S proteasome non-ATPase regulatory subunit 11 0 ;;; 184.99 2.653e-07 2153390000.0 4504020.0 5889750.0 5725870.0 5900740.0 5730860.0 6736300.0 6724550.0 6371330.0 7839130.0 6941020.0 False True 4479770.856763662 6085786.768320934 6532022.725845768 6647773.078983492 6460651.051531537 6270635.436544541 6399257.8262243755 6846790.997558194 5907281.4504603185 6498038.161093811 0.6894035931622761 0.9365575605201613 1.0052299730948697 1.023043096112639 0.9942464004311141 0.9650044030349322 0.9847984372482036 1.053670481431226 0.9090869126976548 1.0 22.63157278554607 4.73958192925774 2.6761137417731953 0.9964093559363718 0.627853351145105 0.8631472324284473 0.035946582879739064 0.1488378787772594 1.4100701110620868 0.008714391825761433 0.12231575340422522 54901.211647323435 -4.73958192925774 -0.3685560047912668 AELSYR ddPTM_BT-474_Trastuzumab_2h_R1 2 AELSYR 6 0 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 0 ; 128.82 0.0383 661990000.0 626460.0 751550.0 756760.0 677560.0 618770.0 667920.0 742050.0 609070.0 863310.0 715570.0 False True 623087.2089662491 776564.8874284319 863305.2301241638 763339.0265282089 697566.6917628713 621748.2625145594 706154.2065937199 654521.8961947932 650558.8182613248 669901.7099697015 0.9301173585516453 1.1592221304578467 1.288704323748046 1.139479143235406 1.0412970759462923 0.9281186377964016 1.0541161428378172 0.9770416860473399 0.9711257764825656 1.0 19.35358990890032 3.121076091448122 3.8026791785726837 0.989347540762658 1.1429607128162917 0.3714131937629085 0.08694753771262055 0.2359594950772226 6.435537522620181 0.02641972192518204 0.03229778707452386 1321.5271547573002 -3.121076091448122 0.15361317205363378 AEMDMVAWGVDLASVEQHINSHR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEMDMVAWGVDLASVEQHINSHR 23 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;; 166.06 7.1763e-12 198423000.0 116073.0 157970.0 150786.0 161010.0 157915.0 174012.0 166940.0 61402.0 169294.0 147590.0 False True 115448.07586492253 163227.9359551185 172015.35814459276 181393.84949127288 178024.53921446393 161982.96002018728 158864.47442726977 65984.12903303835 127573.76212337696 138170.67984184375 0.8355468468206821 1.1813500240568866 1.2449483373859715 1.3128244696986673 1.2884393376238625 1.1723396034933034 1.1497697963787472 0.47755521727595673 0.9233055976087221 1.0 17.07609197920394 1.852551237450812 8.491645145125931 0.7522000292572858 1.1847988888635876 0.4656879225678012 0.1786914022119194 0.2194430375665449 14.89222356933271 0.07447642529494387 0.046692332338605744 71.21168095808639 -1.852551237450812 0.43259885960630184 AEMDQILHGLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 AEMDQILHGLDK 12 0 A0A5F9ZHC6;A0A5F9ZHM8;P04424-3;P04424-2;P04424 A0A5F9ZHC6 ASL Argininosuccinate lyase 0 ;; 139.3 5.9216e-05 425990000.0 1268845.0 1239836.0 1117879.0 1095171.0 1027417.0 1411302.0 1369603.0 1209618.0 1785083.0 1448996.0 False True 1262013.6795019335 1281103.1917633105 1275266.6464215475 1233819.5363095864 1158252.46497234 1313742.014587561 1303350.0704984546 1299885.8374757445 1345173.2135367126 1356519.834732113 0.9303319031462282 0.9444043197616083 0.9401017322193366 0.9095477299476734 0.8538411568460944 0.9684650242117544 0.9608042854425654 0.9582505203342253 0.9916354918631609 1.0 20.371478711865038 2.528654913012868 24.998949707872722 0.9710856308308884 0.917552001687799 0.5590580712649984 0.026542017611338113 303.6840853273664 147316.4105694661 0.009021356868817644 0.0085053245086152 337.79631923501154 -2.528654913012868 -0.053533629143089345 AEMELGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEMELGLR 8 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 136.11 0.0018725 193388000.0 130125.0 185086.0 165227.0 162995.0 166818.0 154104.0 152978.0 135018.0 170114.0 142995.0 False True 129424.42145824674 191246.47562315024 188489.52542117052 183630.15028774634 188061.28349224862 143451.15320179623 145577.86970728915 145093.72876751193 128191.68411081412 133868.9366758213 0.966799503096544 1.4286098057705137 1.4080154074699132 1.3717159099607061 1.4048164433221741 1.0715790889501078 1.0874656460432068 1.0838491166839754 0.9575909639235033 1.0 17.030461706922544 2.7065782962161538 9.739825648481434 1.0521341271664366 1.3304282569685808 0.526709425877061 0.1301574460950195 0.42008260960809396 125.22256494040965 0.04131110172844778 0.039190944764201464 508.8365463113734 -2.7065782962161538 0.2782941298021442 AENGERS(ph)DLEEDNER ddPTM_BT-474_Trastuzumab_2h_R1 2 AENGERSDLEEDNER 15 1 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 AENGERS(1)DLEEDNER;AENGERS(1)DLEEDNER 188.98 7.279e-07 1001230000.0 1006940.0 1049310.0 938010.0 1010520.0 1029790.0 1132920.0 1041010.0 980220.0 1200530.0 1159950.0 True False 1001518.7469215502 1084235.6490287115 1070073.6546709212 1138451.7283890515 1160927.6524564654 1054603.9070068197 990652.3692556141 1053368.9938563048 904675.4677778174 1085920.9979168414 0.9222758827233263 0.9984480004610252 0.9854065412895406 1.0483743574099604 1.0690719257510553 0.9711608017801495 0.9122692821632657 0.9700235982884738 0.8330951049968521 1.0 20.050487718452235 2.4689593512116477 7.723581870274354 0.9317063573437278 1.0071701540272056 0.3012113658159723 0.054335124673570594 0.16816124035003258 69.00680736803136 0.018461147120145488 0.01586465312326301 294.41460567979556 -2.4689593512116477 0.0754637966834778 AENGKLVINGNPITIFQERDPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AENGKLVINGNPITIFQERDPSK 23 2 P04406;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 221.6 9.841499999999999e-33 3083000000.0 1809560.0 1528080.0 1701120.0 1530360.0 1825330.0 2136660.0 2352930.0 1890060.0 2648500.0 2294180.0 False True 1799817.5300210153 1578941.2190561353 1940622.9095998965 1724103.4190886521 2057774.95592146 1988957.7233566302 2239109.786834526 2031105.8747302098 1995812.6630817638 2147763.468253684 0.8379961558264241 0.7351560087479977 0.9035552276982294 0.8027436189193105 0.9581012929671475 0.9260599468962116 1.042530902462511 0.9456841522598729 0.9292516110745335 1.0 21.034403688361106 3.2314566945236445 21.276254415157833 0.966316117402712 0.8197902855530655 0.672921678288634 0.05023182807748497 14.710358287240664 44057.72798359655 0.01401414696233845 0.01716167717696919 1703.9494023059162 -3.2314566945236445 -0.1465258318496464 AENLQLLTENELHR ddPTM_BT-474_Trastuzumab_2h_R1 4 AENLQLLTENELHR 14 0 O94992 O94992 HEXIM1 Protein HEXIM1 0 ;;; 225.32 2.8185e-12 1397480000.0 1150580.0 1482220.0 1280570.0 1323930.0 1285240.0 1342870.0 1278040.0 1224650.0 1520090.0 1387260.0 False True 1144385.4051214547 1531554.7966790874 1460863.1250860253 1491539.4022543982 1448907.6957856917 1250040.5576759602 1216216.32261308 1316039.6016466958 1145484.1876624343 1298723.8791069596 0.8811614412667669 1.179276689462451 1.1248450487339599 1.1484653714691258 1.1156395282282812 0.9625144942553336 0.9364702860852808 1.0133328745380759 0.8820074891131613 1.0 20.30866330219817 2.734329677533353 23.699097653457283 0.9622784895948788 1.1000417459724647 0.3818690620028754 0.08278231905327206 175.81435133901272 984799.5103122897 0.025410233901414073 0.024778634860340928 542.4124852117548 -2.734329677533353 0.1377632563775859 AENSHNAGQVDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AENSHNAGQVDTR 13 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;E9PDP5;D6RHC4;Q8IWZ3-5;Q8IWZ3-3;Q8IWZ3-2 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 0 ; 189.09 5.554199999999998e-06 440260000.0 309690.0 357520.0 319970.0 328560.0 334210.0 353980.0 351620.0 290940.0 370050.0 347390.0 False True 308022.66344979324 369419.83707459614 365018.9947709034 370155.6623119842 376769.66248213244 329510.19577929087 334610.7972811584 312651.4201633849 278856.1359159549 325219.27278445754 0.9471230312169675 1.135910039745501 1.1223781162957815 1.138172590888575 1.1585096395312355 1.0131939382254174 1.0288775152108687 0.9613557569529338 0.8574403771598422 1.0 18.311053229779265 2.071309186953064 1.4602099517520233 0.9313303276142298 1.1022561162449231 0.495693522054213 0.06741200108724966 0.32395680563886975 1.30110353610833 0.04323051474104038 0.021884092855173492 117.84446441824652 -2.071309186953064 0.1709257886306933 AENYDIPSADR ddPTM_BT-474_Trastuzumab_2h_R1 3 AENYDIPSADR 11 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 193.21 2.4531e-06 6299000000.0 5555300.0 6048900.0 5523400.0 5409300.0 5351400.0 5652800.0 6234900.0 5165100.0 7527300.0 5729200.0 False True 5525390.882051851 6250233.979862727 6301046.709746564 6094116.82537198 6032869.069767168 5262035.241259883 5933294.067369016 5550545.989846366 5672297.775652385 5363557.55098511 1.030172759316625 1.16531498365572 1.1747886826700065 1.1362079678352086 1.124788726963343 0.9810718336178605 1.106223623214272 1.0348627635825243 1.0575625826202928 1.0 22.3547588010992 2.865764731194354 7.933964942625309 1.0437659011017908 1.132479005465078 0.4603470640629955 0.04834768006006525 0.2563044911798793 15.366375997455828 0.014258432880440462 0.015143145460430057 734.1160703292453 -2.865764731194354 0.08871310436328717 AEPAKIEAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEPAKIEAFR 10 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 103.91 0.0025097 1501880000.0 1957590.0 2499100.0 2256400.0 2203240.0 2118400.0 2933100.0 2957200.0 2094810.0 3708000.0 3006500.0 False True 1947050.5529486968 2582281.0327621475 2574081.507019615 2482169.958096713 2388165.683259475 2730341.7007747283 2814148.93839896 2251135.3594296416 2794213.0846543997 2814622.596005848 0.6917625672840478 0.9174519654701095 0.9145387771250119 0.8818837600533338 0.8484852237910879 0.9700560581902808 0.9998317154109542 0.7998000735957157 0.9927487573714462 1.0 21.424510058104676 4.739060108368728 24.05335544665785 0.9143706103574314 0.6917624608849348 0.5305782928539773 0.0651246551568084 19.29602705879182 928756.0145087935 0.015112010626966675 0.08929067691636078 54835.28542449985 -4.739060108368728 -0.22260814947249663 AEPDESNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEPDESNAR 9 0 P61088;F8VSD4;F8VV71;Q5JXB2;F8VZ29 P61088 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like 0 ; 131.5 0.00077069 173425000.0 366050.0 396010.0 384200.0 386930.0 367910.0 357080.0 379870.0 334770.0 437160.0 403890.0 False True 364079.2274719782 409190.9534569001 438292.0204737345 435915.29832717305 414761.1577265833 332395.900075906 361494.2368556786 359752.2373276155 329427.7756438831 378113.3944123741 0.9628837085705297 1.0821911085504483 1.1591549703095918 1.1528692312120516 1.0969226794283853 0.8790905188441747 0.9560471599200464 0.9514400776166798 0.8712406926389018 1.0 18.528459431167494 2.7506107897460557 24.548681666830547 0.932562572368872 1.0975711481418802 0.6286864478774437 0.06107654790932043 384.63678325866334 783583.6372385682 0.01915422249384142 0.020170259115050767 563.132755824944 -2.7506107897460557 0.1650085757730082 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR ddPTM_BT-474_Trastuzumab_2h_R1 1 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR 31 1 P56182 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A 0 197.14 1.1957000000000002e-25 109500000.0 30101.0 30572.0 36860.0 31741.0 37657.0 34187.0 31497.0 37756.0 38827.0 30608.0 False True 29938.939560535513 31589.570538835746 42049.56760713657 35759.40734552194 42452.395739474225 31823.73315754171 29973.369779775458 40573.544441083286 29258.606105144656 28654.571235172807 1.0448224583373342 1.1024269140017806 1.4674645543298768 1.24794773762408 1.4815226300564888 1.1105988254494916 1.046024019475952 1.41595363993024 1.0210798781462977 1.0 14.806477688592635 AEPEDHYFLLTEPPLNTPENR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEPEDHYFLLTEPPLNTPENR 21 0 B4DXW1;P61158;F8WDR7 B4DXW1 ACTR3 Actin-related protein 3 0 ;;; 263.19 9.7502e-37 5345100000.0 2544580.0 2805140.0 2573200.0 2681420.0 2712690.0 2885630.0 2778890.0 2453780.0 3034690.0 2784530.0 False True 2530880.264009418 2898507.389157061 2935484.1933446485 3020887.4970678105 3058134.9921266763 2686153.19014237 2644464.4743093066 2636893.5236423686 2286831.3122626385 2606818.91144393 0.9708692279693301 1.1118944152325345 1.126079061517422 1.1588405638021575 1.1731290496249929 1.0304333677917412 1.0144411883388265 1.0115369011888056 0.8772497783499472 1.0 21.313858935613084 2.1340498761462308 1.4644236189113724 0.9590250684754787 1.109723755822706 0.4968404786879086 0.0627640633924915 0.35185975404376296 1.4421768714494014 0.04004199373591396 0.02146643926853058 136.16010452939628 -2.1340498761462308 0.15069868734722724 AEPHFLSILQHLLLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEPHFLSILQHLLLVR 16 0 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ; 238.22 5.0571999999999996e-20 234290000.0 146495.0 193126.0 177245.0 206082.0 176444.0 179639.0 214926.0 163038.0 228010.0 202793.0 False True 145706.28719712447 199554.08216286765 202199.5553588423 232171.96006993632 198913.09753447663 167220.9787547205 204529.20828294804 175204.723450189 171819.9906774674 189850.5771201776 0.7674787688682702 1.0511112749293758 1.0650457766628103 1.2229194327019022 1.0477350164101022 0.8808031099577206 1.0773167581865115 0.9228558907107371 0.9050274867940137 1.0 17.534504858999043 2.7920911305982594 23.91931052752533 0.9600623986641545 1.0445527163270019 0.08521626742831312 0.11623104949375208 475.28391678335373 212372.1236694035 0.03608555265738483 0.03827447959520636 619.5710697259161 -2.7920911305982594 0.08449031766284731 AEPS(ph)PQSWSSLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEPSPQSWSSLWK 13 0 Q8WXH0;Q8WXH0-2;A0A0C4DGK3;Q8WXH0-7 Q8WXH0 SYNE2 Nesprin-2 1 AEPS(0.996)PQS(0.004)WSSLWK;AEPS(0.974)PQS(0.017)WS(0.009)SLWK 114.33 0.00078845 63843000.0 89512.0 96455.0 96145.0 86204.0 83820.0 104137.0 93549.0 78285.0 96729.0 99742.0 True False 89030.07733771809 99665.4463667213 109681.38029267896 97117.4175613048 94493.98015993657 96938.25430213017 89023.67747811577 84127.02422317522 72891.43405219408 93376.3801665775 0.9534539374828422 1.0673517884172048 1.1746158942659202 1.0400640653241595 1.0119687654561609 1.0381453439210058 0.9533853991695033 0.9009454433026638 0.7806196162472824 1.0 16.510770041625477 2.0843338731597907 1.713831762276947 0.8798194038114537 1.0571753746231851 0.48393183767768067 0.07179412548396155 0.29278228402254114 1.6361519180679527 0.04226777229447405 0.02260252327715822 121.4322027716602 -2.0843338731597907 0.17735597081173138 AEPVEVVAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AEPVEVVAPR 10 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 126.07 0.00091287 489370000.0 244160.0 397380.0 394720.0 403430.0 396370.0 388070.0 383880.0 346640.0 399820.0 368150.0 False True 242845.4696887261 410606.5530787169 450293.1450322554 454504.1966353899 446845.3700309473 361243.6343185195 365310.2578359907 372508.03700225404 301289.71831351746 344654.3518109274 0.7046058418027688 1.1913575178182285 1.3065064829916322 1.3187246708108435 1.2965029098953043 1.0481331003668648 1.0599322362144288 1.0808162875210314 0.8741793531125956 1.0 18.394790706193845 1.862485879585663 1.2574319665845433 0.9607393932798525 1.1714888294160024 0.15482527602627671 0.17395056398006695 0.8168554627991117 2.397050674039474 0.14020611114334766 0.05913536528152988 72.85944850037069 -1.862485879585663 0.21074943613614994 AEPYCSVLPGFTFIQHLPLSER ddPTM_BT-474_Trastuzumab_2h_R1 2 AEPYCSVLPGFTFIQHLPLSER 22 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ; 297.76 1.3049000000000003e-55 1759070000.0 876910.0 1039300.0 888920.0 891890.0 960470.0 942210.0 793680.0 857270.0 1153090.0 984680.0 False True 872188.8139938597 1073892.4722298824 1014072.2093688496 1004803.1825524572 1082780.1613482963 877077.2404237682 755286.6662479669 921243.8405288557 868926.4201143852 921836.8793730391 0.9461422443708847 1.1649484808638373 1.1000560208206702 1.090001067472854 1.1745897626537984 0.9514451635090658 0.8193278910273729 0.9993566770244788 0.9426032300913808 1.0 19.814151960297853 2.6547624039407016 7.2259894842910555 0.9359810099624083 1.0987753588839042 0.5116231913342429 0.07443357628845193 0.20673269417891438 15.553002001992542 0.023276043278315135 0.02192924657637399 451.6088083087929 -2.6547624039407016 0.1627943489214959 AEQDASIPPGTHEALLQTALSPPPPPT(ph)RPVSPPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQK 35 1 Q5JQP0;Q5JQP1;Q5JQN9;Q5JQP2;Q5JQP8;Q9UGP5 Q5JQP0 POLL DNA polymerase lambda 1 AEQDASIPPGTHEALLQTALS(0.005)PPPPPT(0.588)RPVS(0.407)PPQK;AEQDASIPPGTHEALLQTALS(0.014)PPPPPT(0.544)RPVS(0.442)PPQK 85.412 0.0012293 446430000.0 297603.0 294609.0 251604.0 247757.0 243810.0 307090.0 297176.0 295060.0 375462.0 311076.0 True False 296000.73851480166 304414.88247009844 287027.656218828 279123.0107969027 274857.7583249116 285861.5911121033 282800.4615574359 317078.87548432127 282934.42103303975 291222.86335443717 1.0164062502007252 1.045298706851892 0.9855945131254913 0.958451570669408 0.9438055623757527 0.9815904830390709 0.9710791876022775 1.0887842796134302 0.9715391771582513 1.0 18.151764097669993 AEQEEEFISNTLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEQEEEFISNTLFK 14 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 79.492 0.044055 14916000.0 26496.0 34745.0 33039.0 30244.0 30309.0 26704.0 26108.0 22363.0 32174.0 29678.0 False True 26353.348479982327 35901.46632120398 37690.60401986393 34072.88729901282 34168.6714944824 24858.015334454438 24845.056297754632 24031.840617013066 24245.14880951204 27783.924631385875 0.9485106524588139 1.2921668481870339 1.3565615556445565 1.2263525672151685 1.2298000353731182 0.8946905688901053 0.8942241467819354 0.8649548591801787 0.8726322552042814 1.0 14.761962781832088 2.737818491152706 24.026696496113296 0.8935126976636005 1.2241808987730518 0.6763975558551113 0.1052473689603277 21.260464257834457 688306.7743098591 0.032957434384386135 0.03280852919596744 546.7873910477667 -2.737818491152706 0.3306682011094513 AEQEEMEVEER ddPTM_BT-474_Trastuzumab_2h_R1 2 AEQEEMEVEER 11 0 P78356 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ; 265.36 1.416e-20 1331200000.0 817460.0 853340.0 750920.0 742420.0 824070.0 842720.0 887400.0 795160.0 894780.0 862870.0 False True 813058.8861883444 881742.9060450764 856643.0088863535 836410.2958779626 929010.4298544374 784464.7499495 844473.0718027978 854498.876940666 674273.4584377191 807800.8978598265 1.0065090152071487 1.0915349418169138 1.0604630561267367 1.0354163978944977 1.1500487710718585 0.9711115103088486 1.0453975404584595 1.0578087734298889 0.8347025365088445 1.0 19.623640224014824 1.2613713974549474 24.997080088234963 0.9173512864325439 1.0536954752647094 0.46211641600769526 0.05821494029829939 156.43468457291607 171428.8176846967 0.03567959853160623 0.013010632744469645 18.254561180653763 -1.2613713974549474 0.13634418883216548 AEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 32 1 Q5STZ8;Q8NE71 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK 268.44 2.8569999999999993e-60 284430000.0 76601.0 92479.0 91583.0 104750.0 103890.0 160220.0 149240.0 135830.0 232060.0 170100.0 True False 76188.58872717115 95557.10761026393 104477.09034629371 118011.33925974055 117119.77569572646 149144.36851731167 142020.6910478361 145966.32433076447 174871.9224446871 159244.07237006343 0.47843908783065 0.6000669675678797 0.6560815030119422 0.7410721008534426 0.7354733771411891 0.936577206909898 0.8918428732329682 0.9166201426421505 1.09813771930114 1.0 17.280880145684634 3.7468318196363914 0.3879042810028013 1.041856411897795 0.3320881749597893 0.9204843631051609 0.052072147759594845 0.6955662366634049 0.1439915871442537 0.04838758232325872 0.21583057001186212 5582.539692476428 -3.7468318196363914 -0.7097682369380058 down AEQLVLSGADS(ph)DEDTSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AEQLVLSGADSDEDTSR 17 0 H7C1N2;J3KR05;O75128-2 H7C1N2 COBL Protein cordon-bleu 1 AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR 270.08 7.5768e-29 757340000.0 483490.0 599130.0 553030.0 545590.0 559100.0 598400.0 593760.0 541240.0 616340.0 617010.0 True False 480886.94356078876 619071.6798682665 630891.8169770687 614661.6380593972 630298.0709546711 557034.0164820831 565037.5604165316 581630.0771610317 464451.26553287264 577631.8935511617 0.8325145285943181 1.0717408210657162 1.092203917443817 1.0641061286983033 1.0911760205616912 0.964340824495602 0.9781966105486268 1.0069216808394874 0.8040609784849692 1.0 19.139790876284117 1.7553016201337244 1.3985629303536171 0.9184792092263475 1.0305389972015702 0.16195280105586063 0.08847795695052657 0.6761873505560491 2.5194265917784744 0.06909299521016624 0.02716170703262733 56.924813985252264 -1.7553016201337244 0.11205978797522265 AEQMFGEMEVWNAISER ddPTM_BT-474_Trastuzumab_2h_R1 1 AEQMFGEMEVWNAISER 17 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 71.692 0.069736 36077000.0 17554.0 21073.0 18617.0 16132.0 15059.0 19358.0 19214.0 22105.0 23657.0 21579.0 False True 17459.49121443274 21774.402066102488 21238.111778135135 18174.309545948774 16976.674388314044 18019.82702383047 18284.545415392127 23754.58734691562 17827.049337559096 20201.809745288625 0.8642538185720992 1.077844130829943 1.0512974850230035 0.8996376945975003 0.8403541367017016 0.891990730089564 0.9050944269810465 1.1758643233661559 0.8824481352081162 1.0 14.302196919734572 AEQPS(ph)PPNS(ph)DSGQDAHPDPDANPDAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 AEQPSPPNSDSGQDAHPDPDANPDAAR 27 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 AEQPS(1)PPNS(0.996)DS(0.004)GQDAHPDPDANPDAAR;AEQPS(0.996)PPNS(0.958)DS(0.045)GQDAHPDPDANPDAAR;AEQPS(0.999)PPNS(0.991)DS(0.01)GQDAHPDPDANPDAAR;AEQPS(1)PPNS(1)DS(0.001)GQDAHPDPDANPDAAR 188.54 4.4132e-18 2039630000.0 739640.0 835520.0 752910.0 736150.0 774640.0 909350.0 908520.0 753460.0 936820.0 918010.0 True False 735657.8604217287 863329.7781174944 858913.1835889637 829346.5145208407 873285.8123489999 846488.7748796489 864571.4167165629 809687.0111923559 705953.2637448584 859421.8158520984 0.855991606045443 1.00454719928365 0.9994081692438417 0.9650051921227545 1.0161317716645994 0.984951463025608 1.0059919364036143 0.9421299253260967 0.8214281400861588 1.0 19.713006873869077 1.4958123165434636 6.232907822951041 0.9014918001721324 0.9789577638644696 0.1612584270188906 0.058918744502596314 0.1832592193736475 16.652568475599864 0.031401621615766345 0.013944406912729692 31.31931945095672 -1.4958123165434636 0.07746596369233727 AERLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AERLEK 6 1 F8VYN8;A0A0A0MS84;A0A338VFC5;Q9Y592-2;Q9Y592 F8VYN8 CEP83 Centrosomal protein of 83 kDa 0 ; 81.78399999999998 0.055602 576750000.0 867830.0 780470.0 663180.0 640010.0 690320.0 788390.0 884600.0 643430.0 1124630.0 812240.0 False True 863157.6997049766 806447.4721459218 756549.9795361046 721035.2003782968 778228.1601527957 733890.4549704357 841808.518499838 691446.0138713374 847480.0057699241 760402.1478063503 1.1351331689357549 1.0605539114696159 0.9949340381515773 0.9482287792826185 1.0234428747970674 0.9651346423568148 1.1070569973116637 0.9093162294005332 1.114515533937905 1.0 19.536403081416957 4.550681364929758 2.609905097448641 1.0020962731606902 1.1394846873477973 0.2917891291056638 0.06099060427104475 0.3797222777763614 4.259959091838463 0.014097159543526241 0.09370671101216557 35537.04931250887 -4.550681364929758 0.13738841418710712 AERPDVDEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AERPDVDEK 9 1 Q14204;A0A2R8Y706;A0A2R8Y6H2;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 143.89 9.1987e-05 2693900000.0 3893100.0 3025350.0 2530680.0 2427530.0 2591410.0 4005900.0 3940400.0 3528500.0 6005100.0 3765200.0 False True 3872139.9821640714 3126046.9458873067 2886977.746935116 2734855.049099741 2921410.703009553 3728981.5618742853 3749787.798210219 3791814.5873599476 4525223.569217401 3524901.712450105 1.09851005731238 0.8868465565567328 0.819023616102028 0.7758670374950073 0.8287921029658796 1.057896607075131 1.0637992500516558 1.0757220758715327 1.2837871629821949 1.0 21.749151599619225 2.6246882372274927 4.1531905955544515 1.1019773970986453 0.8730861656039951 0.5094703891852115 0.10559112006843549 0.1963035882419709 5.765377647253652 0.03616265576696268 0.03390487720144548 421.39389287388883 -2.6246882372274927 -0.22889123149465018 AERPDVDEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 AERPDVDEKR 10 2 Q14204;A0A2R8Y706;A0A2R8Y6H2;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 99.522 0.0026084 142660000.0 132740.0 130830.0 124930.0 113370.0 132310.0 165130.0 160190.0 136010.0 208680.0 154900.0 False True 132025.34258880033 135184.59746159485 142519.05808897383 127722.63037591205 149158.89423718915 153714.9517742085 152440.99771477393 146159.7568447858 157253.6101687378 145014.14938343805 0.9104307624472322 0.9322166011824649 0.982794152811483 0.8807597804693887 1.0285816582131706 1.0599996788435055 1.0512146460391132 1.0078999702182068 1.0844018382850136 1.0 17.145834148810817 3.1533091836612424 7.352172027669724 1.039508870854073 0.9312234815534419 0.735729174569185 0.03290736463452603 0.11499885240735906 8.433055610864015 0.009146371670691152 0.01097640423984553 1423.3417343625656 -3.1533091836612424 -0.10828538930063103 AES(ph)DGS(ph)LLLES(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 AESDGSLLLESK 12 0 Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7;Q6IN85-2;Q6IN85;G3V5Z3;G3V231;H0YIY8;Q6IN85-5;Q6IN85-4;G3V4R3;G3V5A2 Q5MIZ7-3;Q6IN85-2 SMEK2;SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3B;Serine/threonine-protein phosphatase 4 regulatory subunit 3A 3 AES(1)DGS(1)LLLES(1)K 57.106 0.077309 267540000.0 461910.0 392060.0 325250.0 312330.0 331970.0 488680.0 476690.0 504960.0 787270.0 460930.0 True False 459423.1278830258 405109.4800947256 371042.37287632003 351870.94597608404 374244.4117596533 454898.7018289845 453630.683567361 542642.6793349248 593257.8573775265 431513.0527779734 1.0646795616618647 0.9388116477282247 0.8598636135978779 0.815435231242315 0.8672841049659127 1.0541945345580166 1.0512559948001567 1.2575347972477926 1.374831777528583 1.0 18.71904467438157 2.1683602104215858 1.7194824423262633 1.2315783413304477 0.9076969231979063 0.5525570557298501 0.11264187311854966 0.24705540025410824 1.4270457561474448 0.062042040450742506 0.036009358154156734 147.3534167287111 -2.1683602104215858 -0.32388141813254145 AES(ph)GDSLGSEDRDLLYSIDAYR ddPTM_BT-474_Trastuzumab_2h_R1 3 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 AES(0.838)GDS(0.161)LGS(0.001)EDRDLLYSIDAYR;AES(0.991)GDS(0.005)LGS(0.005)EDRDLLYSIDAYR;AES(0.999)GDS(0.001)LGS(0.001)EDRDLLYSIDAYR 236.77 1.0143000000000001e-30 306079000.0 199590.0 141724.0 141266.0 133928.0 166967.0 181331.0 131396.0 137582.0 216125.0 174323.0 True False 198515.42961653345 146441.19766603288 161155.02489391642 150883.27106805283 188229.25775905655 168796.01477726037 125039.87349853551 147849.06746724 162863.88967662698 163197.55689457097 1.216411773521699 0.8973246931670488 0.9874842979299373 0.9245436876578157 1.153382816145076 1.0343047897849729 0.766187165285286 0.905951475503727 0.9979554398712013 1.0 17.31625993442717 AES(ph)GPDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 AESGPDLR 8 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 AES(1)GPDLR;AES(1)GPDLR;AES(1)GPDLR;AES(1)GPDLR 123.86 0.0013945 10144500000.0 17800100.0 15832100.0 13675300.0 15026800.0 13369100.0 17134200.0 16232400.0 14281600.0 20706200.0 15949900.0 True False 17704266.23937701 16359061.87779346 15600663.372161537 16929191.33926747 15071575.640136078 15949753.083568368 15447176.798210232 15347365.512495363 15603434.45886488 14931963.726603583 1.1856622855193617 1.0955733738253919 1.0447831013925224 1.1337551878126733 1.0093498695877325 1.0681617887372334 1.0345040398597218 1.0278196353472033 1.044968682254764 1.0 23.831900573309873 7.999999999999867 0.4237196299284531 1.0292561143040513 3.770504758147808 0.6507894530137588 0.03272804157905994 47.53779131548849 0.6056065098048061 0.020016037486584 110.72822130232453 99999999.99996932 -7.999999999999867 2.7412486438437567 AES(ph)PAEKVPEESVLPLVQK ddPTM_BT-474_Trastuzumab_2h_R1 5 AESPAEKVPEESVLPLVQK 19 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK 200.95 3.7697e-16 10569474000.0 2438520.0 1563986.0 1509238.0 1353945.0 1441979.0 2294530.0 2035310.0 2023690.0 3057890.0 2267580.0 True False 2425391.2792650415 1616042.3285604983 1721725.5918681375 1525354.2981768933 1625606.4783708528 2135914.5418426353 1936854.2796607546 2174708.0238895994 2304313.983126712 2122861.1030270928 1.1425105843272345 0.761256742730885 0.8110401520914599 0.7185370234547211 0.7657620538870018 1.0061489839334892 0.9123791834043679 1.0244231338492074 1.0854756252497522 1.0 21.017578549361904 2.7263870232726237 23.868396813261892 1.000828209138505 0.8271196453799907 0.33416760696428405 0.11627424342875563 473.93060673914835 929219.2582701867 0.037421341399423554 0.03555486207808962 532.5826610312729 -2.7263870232726237 -0.1737085637585143 AES(ph)PDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AESPDLR 7 0 Q6UN15;Q6UN15-5;A0A0B4J203;Q6UN15-4 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 AES(1)PDLR;AES(1)PDLR;AES(1)PDLR 113.71 0.0063664 6859220000.0 14041070.0 15531690.0 14106510.0 14749420.0 14594470.0 15814610.0 14928090.0 14272880.0 17980850.0 15830960.0 True False 13965474.439229527 16048652.912545117 16092583.99201705 16616695.059707915 16452989.246299056 14721383.23428762 14205961.255858297 15337994.781816116 13549710.448545858 14820614.579233242 0.9423006289359995 1.0828601490678134 1.085824336499925 1.1211879892613466 1.1101421711184036 0.9933045053958379 0.9585271366387057 1.0349094971613275 0.9142475419023322 1.0 23.821101938577822 2.655028437859628 6.751630553927481 0.984233843429132 1.073010556853077 0.3961119477106072 0.05428379356454761 0.2694904595326222 18.458610005001706 0.017744129834907536 0.016717929011603083 451.88553313823746 -2.655028437859628 0.088776713423945 AES(ph)PEEVACR ddPTM_BT-474_Trastuzumab_2h_R1 5 AESPEEVACR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR 219.93 6.3788e-09 4381640000.0 1948250.0 2053450.0 1689545.0 1886850.0 1817661.0 2049420.0 1965480.0 1813957.0 2346120.0 2101532.0 True False 1937760.8384709256 2121797.841913262 1927418.2502116014 2125725.016536911 2049129.3542291864 1907748.4192157597 1870402.2235372607 1949323.6824270089 1767950.1623973513 1967410.4285479363 0.9849296366193943 1.078472397586747 0.9796726815330284 1.0804685111412264 1.0415362877493557 0.9696748535707364 0.9506924413924789 0.9908068261413677 0.8986178667875628 1.0 20.907866524126167 2.706722565758061 6.056373658923735 0.9625281400571865 1.0352710566138996 0.4402127031458438 0.040046819452555234 0.17219904091536917 20.33418931150189 0.012095029425490638 0.011612883227546812 509.00560627627755 -2.706722565758061 0.07274291655671317 AES(ph)PESSAIESTQS(ph)TPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 AES(0.998)PES(0.002)SAIEST(0.05)QS(0.635)T(0.316)PQK 333.46 8.0948e-75 415950000.0 848690.0 622290.0 605970.0 519290.0 555400.0 1023500.0 921190.0 815590.0 1329600.0 1010300.0 True False 844120.7473383234 643002.5464677517 691285.3088143391 585032.0607559974 626126.8978862882 952747.8540598457 876628.5204124635 876453.4672821037 1001937.8957272095 945821.7890386537 0.8924733571599142 0.6798347785171119 0.730883256048659 0.6185436490637756 0.6619924653276303 1.0073228012945565 0.9268432283670275 0.9266581479085432 1.0593305285825494 1.0 19.851208852197768 2.737076041658278 24.999186583414087 0.9704096916528965 0.7100246732124856 0.7496288025379054 0.07698521261132237 68.59043273984175 1155004.722129207 0.02450083725493264 0.024262833169737527 545.8534275051059 -2.737076041658278 -0.26038501844041084 AES(ph)PESSAIESTQST(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 AES(1)PESSAIESTQS(0.004)T(0.996)PQK;AES(0.999)PES(0.001)SAIES(0.056)T(0.003)QS(0.095)T(0.846)PQK 350.76 1.1706e-89 667750000.0 882620.0 640550.0 604630.0 563720.0 533540.0 1018850.0 918760.0 863050.0 1307600.0 1044460.0 True False 877868.0719883016 661870.319529348 689756.6484618275 635086.8942004866 601483.1564606592 948419.2976149239 874316.0687959645 927455.1734791015 985359.5009423118 977801.6685928057 0.8977976824806173 0.6768962876509227 0.7054156999491363 0.6495048173874217 0.6151381980420203 0.9699505820846397 0.8941650407021993 0.9485105244439193 1.0077294124077154 1.0 19.89918234170607 2.728141593220601 24.907945763570904 0.9540883778111597 0.7036708256397255 0.736337626627209 0.07618130841135344 353.13273426391106 844205.4923851687 0.02462763600257241 0.02345262683576011 534.7386720638265 -2.728141593220601 -0.25041755217143424 AES(ph)PESSAIESTQSTPQK ddPTM_BT-474_Trastuzumab_2h_R1 3 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 AES(0.997)PES(0.003)SAIESTQSTPQK;AES(0.962)PES(0.038)SAIESTQSTPQK;AES(0.861)PES(0.139)SAIESTQSTPQK 416.83 8.013599999999994e-148 6256670000.0 1540230.0 1679870.0 1611470.0 1449720.0 1443340.0 2085010.0 1891830.0 1929530.0 2501980.0 2054110.0 True False 1531937.5728156392 1735783.4574471407 1838350.9688516653 1633254.4033568602 1627140.793653576 1940878.1662856052 1800314.9554075839 2073521.3265548106 1885400.553814352 1923014.9411879515 0.7966332138164655 0.9026364903721718 0.9559733153794506 0.8493196638128613 0.8461404843003467 1.0092891764463456 0.9361939508880939 1.0782658429444563 0.9804398881319336 1.0 20.874938541307248 2.7314010104399875 24.827809718494976 1.0062512353523798 0.8755577198349401 0.6218401486902629 0.050785309218322736 347.2505642363453 1204179.5212714856 0.01664163942611359 0.015996227035645242 538.7670291922842 -2.7314010104399875 -0.13069351551743968 AES(ph)PSPAPPPGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 AESPSPAPPPGLR 13 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 AES(0.983)PS(0.017)PAPPPGLR;AES(0.999)PS(0.001)PAPPPGLR;AES(0.989)PS(0.011)PAPPPGLR;AES(0.856)PS(0.144)PAPPPGLR 244.26 5.2191999999999995e-17 8083700000.0 2935800.0 3656820.0 3211880.0 3254480.0 2936940.0 3755850.0 3652480.0 3240130.0 4249350.0 3549240.0 True False 2919993.9789980426 3778535.0431056316 3664084.7858385737 3666496.8343106518 3310941.9003927903 3496216.929819903 3475795.588571432 3481924.953646762 3202154.6308727525 3322724.4645427573 0.8787951002731926 1.1371797702237698 1.1027350672433176 1.103460992157591 0.9964539448649142 1.0522139187671162 1.0460679558784116 1.0479126363930729 0.9637135624826488 1.0 21.66393523246573 1.2502800103960086 23.390717419075425 0.9818568164347636 1.050858547648735 0.11974978622110788 0.06794634214400466 165.41297040216824 330158.2796333608 0.04417821141012662 0.015790105684753787 17.79426321406376 -1.2502800103960086 0.06900173121397146 AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR ddPTM_BT-474_Trastuzumab_2h_R1 5 AESPTPGMAQGMEPGAGQEGAMFVHAR 27 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 AES(0.913)PT(0.087)PGMAQGMEPGAGQEGAMFVHAR;AES(0.789)PT(0.211)PGMAQGMEPGAGQEGAMFVHAR;AES(0.958)PT(0.042)PGMAQGMEPGAGQEGAMFVHAR;AES(0.948)PT(0.052)PGMAQGMEPGAGQEGAMFVHAR;AES(0.981)PT(0.019)PGMAQGMEPGAGQEGAMFVHAR 151.32 5.4761e-08 1610960000.0 472842.0 474353.0 420229.0 441323.0 451370.0 463971.0 461725.0 414887.0 615035.0 478253.0 True False 470296.27120968484 490141.5528525557 479393.59050405293 497194.4465501339 508849.29402040667 431897.7768402551 439389.59778921225 445847.97469349834 463467.8652967688 447730.48408700636 1.050400381311301 1.094724550310735 1.0707191213071245 1.1104770932986445 1.1365080379952937 0.964637861817614 0.9813707429039537 0.995795440649196 1.035149228763937 1.0 18.772271023064544 2.7333492205148695 24.999460976597845 0.9940224728698304 1.0924671293034676 0.7645945993296323 0.026954505388747163 212.10686100302163 1017488.8357413608 0.008852446600627785 0.00858198034970923 541.189323748888 -2.7333492205148695 0.0984446564336372 AESEQEAYLRED ddPTM_BT-474_Trastuzumab_2h_R1 1 AESEQEAYLRED 12 1 Q9NR28-2;Q9NR28;Q9NR28-3 Q9NR28-2 DIABLO Diablo homolog, mitochondrial 0 149.94 0.00052842 0.0 357410.0 368460.0 375450.0 304140.0 381900.0 437660.0 408770.0 341430.0 419140.0 297180.0 False True 355485.74427198386 380723.9683612267 428310.09653009794 342644.0928158231 430532.7013013574 407405.594340823 388996.23344695714 366909.2403464103 315848.5631882536 278213.7179714014 1.2777434084272061 1.368458648039644 1.5395002793288772 1.2315859020691593 1.5474891189427742 1.464361992325273 1.3981921390624723 1.3188035551292487 1.1352731471735726 1.0 18.085834031489455 1.185897739225529 1.793011762511208 1.001764457840008 1.409323025630627 0.6725415044527508 0.0948434225102323 0.18115827865535952 1.0671029596618125 0.08533034912429467 0.024939309492457113 15.342556780778654 -1.185897739225529 0.40755856779061905 AESGDSLGSEDRDLLYSIDAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 0 ; 225.39 5.585700000000001e-26 515360000.0 231616.0 301130.0 280750.0 268400.0 251030.0 361550.0 370380.0 287340.0 405950.0 396130.0 False True 230369.0051909566 311152.9300130713 320277.15967725427 302379.41248032806 282997.1825286188 336556.8994971538 352463.304410999 308782.76988295553 305909.0619513086 370848.6442560446 0.6211941414889014 0.8390294391860911 0.8636330876165363 0.8153714922887964 0.763106962670273 0.9075316971221964 0.950423602378463 0.8326382600168359 0.8248892551973311 1.0 18.500470969274257 4.743112406140665 3.697406228136318 0.8619040881612495 0.59404940280875 0.5576987049298106 0.06568910475451374 0.20658729440008036 5.266441956305531 0.015626274747616554 0.15299969572395353 55349.33484300073 -4.743112406140665 -0.26785468535249957 AESPES(ph)SAIESTQSTPQK ddPTM_BT-474_Trastuzumab_2h_R1 3 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 AES(0.478)PES(0.5)S(0.022)AIESTQSTPQK;AES(0.024)PES(0.969)S(0.007)AIESTQSTPQK;AES(0.002)PES(0.881)S(0.117)AIESTQSTPQK 459.39 3.899699999999996e-214 6617270000.0 879560.0 878460.0 869340.0 765480.0 806750.0 1061590.0 1044780.0 967690.0 1188780.0 979400.0 True False 874824.5466883029 907699.010059717 991735.5155612618 862389.6895135669 909484.8305181181 988204.7820140615 994239.9999528156 1039903.9416302542 895821.0978358841 916893.8534934735 0.9541175822644229 0.9899717471125768 1.0816252195198308 0.9405556447213171 0.9919194321707729 1.0777744645673923 1.0843567073381986 1.1341595732898608 0.9770172353350394 1.0 19.806395200730012 2.7407489978285002 24.452688169062583 1.0712143314020544 0.9937067459183606 0.22006583002323987 0.05501052572739712 175.8778678246816 1965247.3604489556 0.017157432029707317 0.017382689628941347 550.4894469476368 -2.7407489978285002 -0.07750758548369374 AESSQTCHSEQGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AESSQTCHSEQGDK 14 0 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 0 ; 258.41 2.2201e-24 537870000.0 515300.0 480820.0 486250.0 469050.0 484710.0 544220.0 572770.0 499050.0 697110.0 609110.0 False True 512525.682055212 496823.80303817155 554709.7734392331 528431.6819072198 546434.9453987444 506599.3523560808 545062.9269061171 536291.6451245531 525316.5812954236 570236.078314693 0.8987956068475333 0.8712598552278767 0.9727721456675502 0.9266893169386543 0.9582609136442372 0.8884028415973124 0.9558548601783073 0.9404730172624975 0.9212264906983316 1.0 19.12119979459496 AESSQTCHSEQGDKK ddPTM_BT-474_Trastuzumab_2h_R1 6 AESSQTCHSEQGDKK 15 1 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 0 ;;;;; 266.42 1.7068e-25 1099960000.0 1307466.0 1074679.0 1065038.0 946449.0 958355.0 1341752.0 1422544.0 1291566.0 1946530.0 1387898.0 False True 1300426.748329127 1110449.0408578254 1214986.0929237516 1066269.3463583968 1080395.8286348823 1248999.8423844718 1353730.1120741952 1387949.2133592574 1466833.7636656766 1299321.1614007414 1.0008508958071565 0.8546378477055656 0.9350929770234236 0.8206357119658533 0.8315079140788831 0.961271069454437 1.0418749053658125 1.0682110432673704 1.128923169452845 1.0 20.309326644214952 2.35056662170256 2.707821985830874 1.068624146572656 0.8857786048793036 0.662606954354894 0.05741008842375524 0.1537131955283234 2.3004957143564204 0.022317079614248166 0.017428110844676523 224.16438923766327 -2.35056662170256 -0.18284554169335243 AESTFLFLVGQDDHNWK ddPTM_BT-474_Trastuzumab_2h_R1 2 AESTFLFLVGQDDHNWK 17 0 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753;P49753-2 Q86TX2 ACOT1;ACOT2 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial 0 ; 290.2 5.767e-46 1756770000.0 1800580.0 2003010.0 1891920.0 1615010.0 1866890.0 2523200.0 2149670.0 1938010.0 2615000.0 2129010.0 False True 1790885.8773432458 2069678.9770048838 2158285.8911365652 1819470.1004092938 2104627.3755760416 2348777.122973917 2045682.2495631322 2082634.1472153778 1970568.2892047614 1993134.759062835 0.8985272416729685 1.038403935104739 1.0828599929446736 0.9128685815829143 1.0559383232901072 1.1784336770476593 1.0263642436926868 1.0449038318887305 0.9886779006008183 1.0 20.92660782574255 3.1001188913183575 24.831530040642807 1.0551629715327169 0.9930010872769733 0.16655652397693632 0.07005499618113206 22.600455673728558 5574.294405601794 0.02041317212617556 0.02439840945533371 1259.2700990913547 -3.1001188913183575 -0.06216188425574354 AET(ph)EKQSPPHGEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AETEKQSPPHGEAK 14 1 Q9Y6D6;E5RJN9 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 AET(0.656)EKQS(0.344)PPHGEAK 91.371 0.0078897 367720000.0 258100.0 188460.0 162620.0 149510.0 177960.0 249410.0 207430.0 205330.0 309590.0 210730.0 True False 256710.4182776055 194732.77717352446 185515.4824816208 168437.95067039423 200622.15114844055 232168.87374798817 197395.81844044896 220652.76724461344 233295.6927934618 197281.0309849703 1.3012422785704256 0.9870831280700273 0.9403614810577209 0.8537969911725904 1.0169358409513016 1.1768433720608231 1.0005818474026902 1.1184692524311863 1.1825551175836833 1.0 17.58989271879252 2.9682852374327258 23.674731815048446 1.0963087276010683 1.0028518412220129 0.0812540837097574 0.12176299235388043 771.7761494118461 576122.5679500728 0.03748804008322066 0.03980892352647105 929.5767169436269 -2.9682852374327258 -0.09345688637905547 AET(ph)PPLPIPPPPPDIQPLER ddPTM_BT-474_Trastuzumab_2h_R1 4 AETPPLPIPPPPPDIQPLER 20 0 U3KPW8;A0A669KB72;Q8IX15;Q8IX15-3 U3KPW8 HOMEZ Homeobox and leucine zipper protein Homez 1 AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER 163.18 2.2349e-10 995008000.0 290084.0 295338.0 269650.0 260679.0 270859.0 279509.0 290803.0 279489.0 384216.0 311128.0 True False 288522.21997536253 305168.1467944092 307614.3761601836 293680.9346719797 305351.2881429279 260187.20072341347 276735.74791466026 300345.88839638507 289531.11503062944 291271.5446699177 0.9905609567949013 1.047710126096388 1.0561085756206852 1.008271971794541 1.048338891081743 0.8932805331817413 0.9500953765609679 1.031154240407352 0.9940247179268383 1.0 18.152005240903726 AETEKQS(ph)PPHGEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 AETEKQSPPHGEAK 14 1 Q9Y6D6;E5RJN9 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 AET(0.001)EKQS(0.999)PPHGEAK;AET(0.018)EKQS(0.982)PPHGEAK;AET(0.002)EKQS(0.998)PPHGEAK 180.62 1.0455e-06 961930000.0 1946990.0 1224070.0 1145570.0 1039260.0 1131050.0 1775200.0 1537190.0 1482210.0 2345400.0 1519370.0 True False 1936507.622170924 1264812.4299840594 1306856.2985270587 1170830.2094422712 1275082.5132414238 1652484.6023713127 1462830.2470639448 1592820.0367098758 1767407.5967498443 1422402.5058018998 1.3614343438457246 0.8892085220779355 0.9187668702750912 0.8231356487819169 0.8964287591173623 1.1617559696576187 1.0284221527290218 1.1198096391231402 1.2425509583543954 1.0 20.439898340157356 2.735322294901493 24.938169082182732 1.1110985284239763 0.9610018590658475 0.15658697706722657 0.15151274111590937 476.94951036072126 3672945.4529192443 0.0478349831705036 0.04686566758172731 543.653633404867 -2.735322294901493 -0.15009666935812882 AEVAAEFLNDRVPNCNVVPHFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEVAAEFLNDRVPNCNVVPHFNK 23 1 Q8TBC4;F8W8D4;Q8TBC4-2 Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit 0 102.45 0.001099 394270000.0 264000.0 259310.0 260810.0 264500.0 240200.0 306060.0 294830.0 250460.0 346810.0 308140.0 False True 262578.65333315724 267940.97659379465 297529.7809988411 297985.6728802041 270788.0462230585 284902.79258774413 280567.9465400263 269150.59701010986 261343.3225159096 288474.2413880738 0.9102325811472362 0.9288211498694732 1.031391154950938 1.0329715105458408 0.938690556633711 0.9876195226889423 0.9725927181227545 0.9330143159923644 0.9059502895592472 1.0 18.138082977083048 -0.05958361300455297 7.866432026968615 0.9999999991636473 0.9620769489186869 0.06868710896726249 0.04350752926818453 0.0 0.0 0.044073742119631075 0.010388280641686102 0.8717990410962301 0.05958361300455297 -0.037923050244960455 AEVDMDTDAPQVSHKPGGEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AEVDMDTDAPQVSHKPGGEPK 21 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 234.47 5.3545e-30 703350000.0 979280.0 728120.0 603690.0 549370.0 582400.0 894480.0 794940.0 803470.0 1135610.0 900310.0 False True 974007.6652882355 752355.034042165 688684.304632454 618920.1856718246 656565.1878447501 832646.7029794336 756485.7152342978 863429.0113379905 855754.1318943865 842851.4450058306 1.1556101268610837 0.8926306509885149 0.8170885969444945 0.7343170487980157 0.7789809126330776 0.9878925971037205 0.8975314923130548 1.0244142267941625 1.0153083760667536 1.0 19.684918848855062 2.037614627850603 1.570557767686585 1.0153966171275253 0.8727794397959985 0.18016922472127062 0.11149844210504932 0.6445961769470004 2.9831162604667174 0.07494794030559138 0.03749300094750216 109.04722740712953 -2.037614627850603 -0.1426171773315268 AEVEVADELLENLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEVEVADELLENLAK 15 0 Q7L5D6;Q7L5D6-2;C9JPA8;C9JHN8 Q7L5D6 GET4 Golgi to ER traffic protein 4 homolog 0 209.64 5.3134e-09 6992200.0 22150.0 18426.0 19012.0 16569.0 16040.0 23931.0 23122.0 22439.0 25961.0 22205.0 False True 22030.74686109635 19039.298271247786 21688.7243447336 18666.633701142146 18082.598923471505 22276.706297514575 22003.500525382362 24113.512122933233 19563.259409577364 20787.857889343057 1.0597891797398935 0.9158855314769265 1.0433361850069398 0.89795850060682 0.8698635049233039 1.0716210595674112 1.0584784946342407 1.159980612302294 0.9410906844618422 1.0 14.343453481100997 2.7048328831820463 24.452697943474604 1.0656212413570827 0.9565377099649921 0.2305910508820438 0.07719851139812939 576.0746228652745 417654.8328242504 0.024743006176427645 0.023329367696689356 506.7956554290476 -2.7048328831820463 -0.1090835313920906 AEVHPAGDTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AEVHPAGDTAK 11 0 Q14789;Q14789-2;Q14789-4;Q14789-3 Q14789 GOLGB1 Golgin subfamily B member 1 0 74.69800000000002 0.025215 0.0 62616.0 69453.0 56725.0 56644.0 60086.0 66960.0 64629.0 59002.0 80998.0 69526.0 False True 62278.88241329158 71764.70111977492 64711.38693746124 63815.12459215985 67737.59594237582 62331.21280688541 61502.648363244356 63405.028846085246 61037.12821759357 65088.79115579673 0.956829606256178 1.1025661998853031 0.9942017018347732 0.9804318602170959 1.0406952524320032 0.9576335909771196 0.9449038347636758 0.9741313015680192 0.9377517562354925 1.0 15.990121499956437 2.72449755803514 24.032474701657268 0.9608858524238233 1.0167429787365254 0.2981928136694074 0.03982725626228144 549.7958337989031 939548.6929857105 0.012247539519787926 0.011607581517936222 530.2706109983328 -2.72449755803514 0.05585712631270212 AEVPGATGGDS(ph)PHLQPAEPPGEPR ddPTM_BT-474_Trastuzumab_2h_R1 10 AEVPGATGGDSPHLQPAEPPGEPR 24 0 A0A0A0MQW0;A0A0A0MR39;Q9P2K5-2;Q9P2K5;A0A087WWC8;Q9P2K5-4 A0A0A0MQW0 MYEF2 Myelin expression factor 2 1 AEVPGATGGDS(1)PHLQPAEPPGEPR;AEVPGATGGDS(1)PHLQPAEPPGEPR;AEVPGAT(0.004)GGDS(0.996)PHLQPAEPPGEPR;AEVPGATGGDS(1)PHLQPAEPPGEPR;AEVPGAT(0.001)GGDS(0.999)PHLQPAEPPGEPR;AEVPGAT(0.006)GGDS(0.994)PHLQPAEPPGEPR;AEVPGAT(0.021)GGDS(0.979)PHLQPAEPPGEPR;AEVPGAT(0.243)GGDS(0.757)PHLQPAEPPGEPR;AEVPGAT(0.002)GGDS(0.998)PHLQPAEPPGEPR;AEVPGATGGDS(1)PHLQPAEPPGEPR 277.75 2.7376999999999994e-52 65094110000.0 6683920.0 7456915.0 6840313.0 6921860.0 6556441.0 6899986.0 7285420.0 6261988.0 7603855.0 6924525.0 True False 6647934.517373322 7705113.907974692 7803369.613333573 7798166.766285713 7391364.898279585 6423006.208639942 6932996.401592913 6729289.342290758 5729986.82168684 6482595.886115881 1.0255050035760451 1.1885846416058639 1.2037414872715517 1.202938900292622 1.1401859730467023 0.9908077445327782 1.0694784193538394 1.038054733089754 0.883903134230387 1.0 22.628140209916943 2.7953994726493296 4.925637264123645 1.0079580906644932 1.1617307074966572 0.5793294945348182 0.06587762375981372 0.16251384571451466 8.446702627877263 0.020815799274932257 0.021867604005387557 624.3088230558039 -2.7953994726493296 0.15377261683216403 AEVWDLDMLR ddPTM_BT-474_Trastuzumab_2h_R1 6 AEVWDLDMLR 10 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ;;;;; 157.96 1.9197e-05 360287000.0 567266.0 706653.0 685173.0 618848.0 539751.0 637165.0 666544.0 531793.0 788064.0 629618.0 False True 564211.9028851772 730173.5179242407 781639.4027695223 697194.0933480843 608485.090495179 593119.2832750769 634300.7202746497 571478.0940501381 593856.1867165818 589435.2401969107 0.9572076191045055 1.2387680072883223 1.3260818991894725 1.1828171201897852 1.0323188180806842 1.006250123553752 1.0761160463747483 0.9695349973632834 1.0075003091403123 1.0 19.16897379098542 3.2243380596399622 4.909511680090088 1.0131201511234027 1.192705540726754 0.4298273519346957 0.09029595990395661 0.16648063082702783 10.506598767782432 0.026375958607988612 0.03342995090043624 1676.247177707685 -3.2243380596399622 0.17958538960335124 AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR ddPTM_BT-474_Trastuzumab_2h_R1 3 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 AFAAVPTSHPPEDAPAQPPT(0.05)PGPAAS(0.95)PEQLSFR;AFAAVPTSHPPEDAPAQPPT(0.004)PGPAAS(0.996)PEQLSFR;AFAAVPTSHPPEDAPAQPPT(0.001)PGPAAS(0.999)PEQLSFR 218.65 3.5345e-36 2921000000.0 1166160.0 1679420.0 1498370.0 1592070.0 1469650.0 1578440.0 1518360.0 1163730.0 1259540.0 1349490.0 True False 1159881.5241325558 1735318.4794691713 1709327.4719344887 1793625.8987613858 1656801.2162019901 1469326.158048094 1444911.1261015304 1250573.441901204 949143.2439713051 1263364.392843485 0.9180894528157328 1.3735692483492015 1.3529963972526278 1.4197217437199003 1.3114199082918485 1.1630264129425445 1.143701005257425 0.9898754856360228 0.7512822502738463 1.0 20.268839385746443 1.8763617959178978 1.4692607769572223 0.8771577079253823 1.2843295827388803 0.5336333027259026 0.1449511963619819 0.29382771743174085 1.1871481256520082 0.10471965744698757 0.04527767641256781 75.22493062964165 -1.8763617959178978 0.40717187481349804 AFAHITGGGLLENIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFAHITGGGLLENIPR 16 0 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 ; 209.53 1.2025e-11 1005210000.0 472310.0 530620.0 489640.0 562630.0 554280.0 526860.0 557820.0 513340.0 643650.0 589060.0 False True 469767.1354385741 548281.3659334361 558577.055972825 633858.9003122471 624864.2725250486 490439.4082950375 530836.1155206636 551648.0374877023 485031.0819681242 551465.6864803612 0.8518519772948802 0.994225714083412 1.0128953979672806 1.149407689094397 1.1330972857316686 0.8893380319366491 0.9625913788193017 1.0003306660991094 0.8795308463591908 1.0 19.07291159509533 2.7205121003845836 24.786288476276223 0.952227035163207 1.0322757352133956 0.18631299583657512 0.08497318553868777 1420.7366214393196 1951115.636514573 0.0291889437497399 0.027570444756124815 525.4266544303632 -2.7205121003845836 0.0800487000501886 AFAIDSSHPWLHECMIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AFAIDSSHPWLHECMIR 17 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 215.23 3.2865e-15 281680000.0 213410.0 328930.0 317630.0 383770.0 319460.0 342510.0 319000.0 155710.0 338540.0 285840.0 False True 212261.02427208016 339878.23620761646 362349.5431105476 432355.24265117507 360141.33741223195 318833.0898818151 303568.7513016599 167329.87087935896 255111.35320358683 267597.4464800637 0.7932102008600214 1.2701101624037272 1.3540844573699735 1.6156927068561768 1.3458324888726576 1.1914653673855908 1.1344231990803997 0.6253044379921809 0.9533400133644133 1.0 18.029704823719154 1.955370220318786 4.5919358824563785 0.8254935137178904 1.2796395513864653 0.4097227901967544 0.21351825012839618 0.18905542357773542 8.681712437478575 0.09969131161768334 0.060452818291915365 90.23400220288161 -1.955370220318786 0.454146037668575 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR 31 2 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 ; 132.69 1.508e-05 589760000.0 147437.0 134905.0 124617.0 131291.0 112740.0 165570.0 175153.0 141163.0 197117.0 167055.0 False True 146643.21557379077 139395.23137320526 142161.99040961853 147912.42713843042 127096.7707376669 154124.53560985695 166680.18024056288 151697.29987118978 148540.15658247596 156393.40687701892 0.9376559952370929 0.8913114315798473 0.909002452522878 0.9457715008072074 0.8126734577603413 0.9854925388961817 1.0657749809851833 0.9699724745460533 0.9497852853815096 1.0 17.254820168243693 2.5110448147596895 24.502702318249867 0.9978552781586895 0.9016747706000643 0.542726759173793 0.043620360330110124 369.8619900872244 267147.72034098377 0.013848133828349799 0.013048058549101073 324.3730876156848 -2.5110448147596895 -0.09618050755862517 AFAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFASPR 6 0 M0R1U9;M0R364;Q8TBC5-2;Q8TBC5;Q8TBC5-3;M0R3C6 M0R1U9 ZSCAN18 Zinc finger and SCAN domain-containing protein 18 1 AFAS(1)PR;AFAS(1)PR 85.359 0.057486 1038980000.0 1307960.0 1526110.0 1289390.0 1465290.0 1309950.0 1291370.0 1361210.0 1258780.0 1561930.0 1340230.0 True False 1300918.0886880173 1576905.6487970229 1470924.9044212105 1650795.5637604296 1476764.3678180478 1202100.6314580005 1295363.0719728272 1352716.5555553234 1177013.2802897107 1254695.3739713691 1.0368397904985844 1.2568035887514208 1.1723362777416086 1.3156943095560494 1.1769903663100187 0.9580816638010743 1.0324124077007923 1.0781234900657177 0.9380868892217411 1.0 20.258905705765375 2.820103152924612 5.984089140348022 1.0149911145464905 1.2030401615809452 0.6059375968868186 0.07625061964692266 0.1605855938753463 9.385510371978553 0.022956005823207018 0.024353003603680035 660.8503934873256 -2.820103152924612 0.18804904703445469 AFDIIER ddPTM_BT-474_Trastuzumab_2h_R1 6 AFDIIER 7 0 H3BVG0;Q8N1F7;Q8N1F7-2;H3BV15;H3BRD9 H3BVG0 NUP93 Nuclear pore complex protein Nup93 0 ;;;;; 162.31 0.0029707 679442000.0 1037685.0 1303237.0 1209630.0 1277014.0 1192565.0 1250639.0 1236023.0 1125538.0 1416322.0 1266432.0 False True 1032098.2192576416 1346614.4557215972 1379935.389707559 1438683.841464804 1344431.083863452 1164185.2696175405 1176231.8454236088 1209531.3609261576 1067288.4208424739 1185607.225513016 0.8705228823239073 1.1358014920488635 1.1639060221739594 1.2134573832765576 1.1339599278181798 0.98193165878674 0.9920923389401995 1.0201788036529462 0.9002040455519784 1.0 20.177194714405147 2.733977799035291 24.22706420059092 0.9845447725510246 1.1147837809241607 0.3187842454525517 0.09017102225408608 307.0524468611314 1623226.815029199 0.029249317879960404 0.028461830135030418 541.9731842354464 -2.733977799035291 0.13023900837313618 AFDQDGDGHITVDELR ddPTM_BT-474_Trastuzumab_2h_R1 7 AFDQDGDGHITVDELR 16 0 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 0 ;;;;;; 259.14 9.844e-27 14475214800.0 7401487.3 9036764.0 8309642.7 8010501.0 7691384.1 8476916.1 8175791.0 6980943.2 8247582.7 7466292.5 False True 7361638.514759343 9337547.226900805 9479568.163450874 9024629.605264837 8670836.274729783 7890926.8425211115 7780296.754775384 7501896.630095289 6215076.455531089 6989787.320435396 1.053199214407683 1.3358843121880803 1.3562026609502602 1.2911164805945325 1.240500730169523 1.128922309188312 1.1130949195018922 1.0732653636202472 0.8891653165698823 1.0 22.736817128441178 2.0713084923383023 0.9675450152303575 0.9612387273894126 1.2706430044582973 0.6385104076381822 0.08769484646477889 0.3467178310025445 0.6013675541331027 0.0694750041349568 0.03472185941416076 117.84427593683006 -2.0713084923383023 0.3094042770688846 AFDTAGNGYCR ddPTM_BT-474_Trastuzumab_2h_R1 6 AFDTAGNGYCR 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;; 266.54 1.0766e-20 3043650000.0 1532258.0 1809720.0 1743420.0 1663230.0 1455209.0 1755720.0 1789230.0 1400117.0 1870730.0 1664790.0 False True 1524008.4931778694 1869955.4362011568 1988878.381921705 1873794.7474651872 1640521.2404504989 1634351.208920326 1702678.1093776452 1504600.8401900677 1409713.6579977134 1558541.6769015747 0.977842630559384 1.1998109924905451 1.2761149806886474 1.2022743922962296 1.052600174101152 1.0486413248630366 1.0924816029062616 0.9653901865372359 0.9045081558551994 1.0 20.57176530385453 2.3345787784805556 0.9440498868301885 0.9534813521001606 1.1655551850944328 0.4642627957043949 0.08338351284448645 0.4997715734136411 0.8668480762391505 0.06186558205428606 0.03834432646083887 216.0621923418535 -2.3345787784805556 0.21207383299427218 AFEDDDITHVEGSVDPIR ddPTM_BT-474_Trastuzumab_2h_R1 4 AFEDDDITHVEGSVDPIR 18 0 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32 OLA1 Obg-like ATPase 1 0 ;;; 216.93 8.6946e-19 5881910000.0 3498020.0 3744810.0 3210560.0 3199830.0 3403380.0 3539520.0 3408780.0 3317790.0 3741580.0 3550950.0 False True 3479187.0489865574 3869453.737064552 3662578.9413122144 3604928.149914037 3836780.2695863075 3294841.3135338575 3243884.2885958375 3565380.337196247 2819517.743603344 3324325.330878751 1.0465844051631585 1.1639816660307738 1.1017510552566916 1.0844089525260487 1.1541530649685523 0.9911308267361728 0.9758022954204516 1.072512459619521 0.8481473571234479 1.0 21.664630145860333 2.724418338415033 23.609215514445275 0.9893201682576573 1.1112655024566012 0.5407706457680785 0.060633796671965716 313.41273403156714 523212.0570039107 0.018934794800747928 0.01794416392122544 530.1738932019587 -2.724418338415033 0.12194533419894382 AFEDDDITHVEGSVDPIRDIEIIHEELQLK ddPTM_BT-474_Trastuzumab_2h_R1 7 AFEDDDITHVEGSVDPIRDIEIIHEELQLK 30 1 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32 OLA1 Obg-like ATPase 1 0 ;;;;;; 261.6 1.5427999999999998e-58 1483891000.0 571160.3 571908.4 524352.1 461211.2 473717.2 631760.3 603496.0 558004.3 806760.4 640739.3 False True 568085.2364066751 590944.0253680714 598176.3179298431 519600.4906309499 534042.2774781748 588088.1974647826 574302.5929013995 599645.4143544217 607945.1094555062 599846.7693094872 0.9470505893707248 0.9851583030918644 0.9972152031733587 0.8662220373864601 0.8902978307158957 0.9803973740523093 0.9574154972319133 0.9996643226814452 1.0135006814412644 1.0 19.194234486173922 1.89343953126195 1.6463179088038764 1.007986452892258 0.9417235104164591 0.3345930689906743 0.03840001299737404 0.4783281663415715 2.426968948620819 0.028780536701180717 0.012918827991604785 78.24192577946755 -1.89343953126195 -0.06626294247579889 AFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDK ddPTM_BT-474_Trastuzumab_2h_R1 4 AFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDK 41 2 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32 OLA1 Obg-like ATPase 1 0 ;;; 90.879 7.2983e-05 189404000.0 140518.0 110185.6 115090.1 105485.5 104285.0 154205.0 164044.0 131681.0 237329.0 150069.0 False True 139761.46670101737 113853.06108739813 131293.78569891772 118839.95348432804 117565.07660437825 143545.17130952454 156108.565011064 141507.70488256935 178842.44799567008 140491.46793946507 0.9948039461103628 0.8103912839493934 0.9345320938314172 0.8458873355607173 0.8368129277077143 1.02173586350009 1.111160466188082 1.0072334424147533 1.2729772890744488 1.0 17.100122992532956 2.564140999303393 3.94629428594762 1.087780614543365 0.8816803541168873 0.5812191859125793 0.08569034328507528 0.16443501037290692 4.70740541447724 0.027596072431871572 0.02537882105109315 366.55656264577976 -2.564140999303393 -0.20610026042647778 AFEDEKK ddPTM_BT-474_Trastuzumab_2h_R1 3 AFEDEKK 7 1 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;; 112.17 0.010285 8595300000.0 4662410.0 3516970.0 2904280.0 2803610.0 2623920.0 3937270.0 4191290.0 3590830.0 6878730.0 3921070.0 False True 4637308.102602448 3634030.220396736 3313177.3795457054 3158546.7385393893 2958060.658807691 3665095.7922366476 3988541.290417349 3858795.968465278 5183559.161759638 3670823.955603081 1.2632880679347598 0.9899767094114706 0.9025704908808089 0.8604462585895026 0.8058301609077602 0.9984395428830931 1.0865520489832563 1.0512070355690253 1.412096909155108 1.0 21.807672497036375 1.7938099846954418 1.7508627535313734 1.189087510628564 0.958622929227571 0.2331052998724371 0.15226299018997413 0.4696642429398088 2.7908842791218893 0.10848023277118558 0.04558064012495713 62.20280719154545 -1.7938099846954418 -0.23046458140099313 AFEDWLNDDLGSYQGAQGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFEDWLNDDLGSYQGAQGNR 20 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;F8W1U7;E5RHT6;E5RHC5;Q8N6T3-3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 0 ; 376.77 4.468099999999998e-112 197493000.0 124168.0 133080.0 125412.0 111621.0 123656.0 124776.0 120359.0 119930.0 126069.0 129935.0 False True 123499.49328436182 137509.48735144123 143068.91949935458 125752.207155241 139402.85863346592 116150.52881111023 114536.77535397006 128879.78559220026 95000.98418805172 121642.43705704977 1.01526651612908 1.130440088823195 1.1761431533327131 1.0337856606429527 1.1460051443073818 0.9548520370126763 0.9415856680037807 1.0594969051117926 0.7809855383240693 1.0 16.892287100019605 2.728581065369234 24.221242032930483 0.9595489437102315 1.1025161435684245 0.4730818806325259 0.08017722278839921 422.42053387768846 1025249.2222697285 0.025065716717519657 0.023907749385569207 535.2800597749612 -2.728581065369234 0.14296719985819306 AFEEAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AFEEAEK 7 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 170.06 0.0023005 961080000.0 1534740.0 1347380.0 1193300.0 1158850.0 1157050.0 1447080.0 1485280.0 1427460.0 1997440.0 1531340.0 False True 1526477.1303656443 1392226.7287915905 1361306.2676504627 1305560.2911804316 1304393.4591273512 1347046.7656599134 1413431.3320794026 1533984.3136950065 1505197.6763247263 1433608.5701538667 1.0647795794090504 0.9711344908060681 0.9495662177189386 0.9106811429289294 0.9098672303468114 0.9396196379569196 0.9859255598114216 1.0700161436188727 1.0499362989739773 1.0 20.45121973633116 1.937500291624241 4.502539680939777 1.045272701384453 0.953962020836463 0.40842821206815305 0.04398917958517503 0.2052104993496952 8.039718085897144 0.021255823418633777 0.012623458139949218 86.59649048463237 -1.937500291624241 -0.09131068054798996 AFELELSWVGELTNGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AFELELSWVGELTNGR 16 0 P25788-2;P25788;G3V4X5;H0YJ03 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 71.806 0.048711 0.0 25368.0 26494.0 24784.0 28079.0 22393.0 22157.0 19391.0 22706.0 25221.0 23881.0 False True 25231.421506649745 27375.836774038806 28273.371773610223 31633.798520995286 25244.61581629035 20625.338741967767 18452.98324918645 24400.43701873176 19005.622494085394 22356.89413444726 1.128574539688563 1.2244919446059557 1.2646377266709385 1.4149460265258524 1.129164707068757 0.9225493763996704 0.8253822350374821 1.09140549094142 0.8501011983056151 1.0 14.448432159498964 2.927040848753925 4.127837404166099 0.948372023445838 1.2584100818081079 0.7113423239656034 0.09621105234053447 0.12808383523676928 4.156675036344907 0.030463450571852263 0.03321830299038307 845.358353910398 -2.927040848753925 0.31003805836226983 AFELLHLHLDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFELLHLHLDLR 12 0 Q9H4A4;A6NKB8;A0A087WU27 Q9H4A4 RNPEP Aminopeptidase B 0 ; 195.77 1.2397e-07 294020000.0 219780.0 284410.0 276330.0 239890.0 120123.0 178108.0 245700.0 80100.0 417700.0 180202.0 False True 218596.72889985345 293876.41492052434 315234.8620965832 270260.04940352426 135419.95202519756 165795.81318113438 233814.55233485196 86077.46873955855 314763.43189324223 168701.35408130576 1.2957615550287793 1.74199203391628 1.8685971064859115 1.6020028462443294 0.8027200063843696 0.9827770149445804 1.3859672532454295 0.51023579039012 1.8658026404550476 1.0 17.364112027899544 3.3044364631750636 7.717966208103198 1.0451391614083012 1.6569004146407613 0.33706100037044406 0.36401132609541814 0.24278861117103054 24.515231287018437 0.09714838843533266 0.1313860443920886 2015.7490471304825 -3.3044364631750636 0.6117612532324601 AFELMHSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AFELMHSGK 9 0 P11766 P11766 ADH5 Alcohol dehydrogenase class-3 0 ; 152.28 8.0855e-05 3961000000.0 4169300.0 4036300.0 3725300.0 3344300.0 2855700.0 3689800.0 3940600.0 3292500.0 5790100.0 3847800.0 False True 4146852.9520527795 4170645.8055051225 4249789.859111933 3767688.0371011924 3219356.4679399966 3434732.8108549267 3749978.123446144 3538203.0689762314 4363207.438365008 3602230.1097326833 1.1511904641651314 1.1577954984709793 1.1797663474161855 1.0459320816072983 0.893712053331013 0.9535017770171861 1.041015706718532 0.9822257216207647 1.211251726139393 1.0 21.780458912580198 3.6396160945111293 4.579789106602947 1.0072403579245621 1.16205348625624 0.4239709971359604 0.07750172157341474 0.20540733831148691 7.162735432681414 0.021033403344565483 0.033422762264766835 4361.301336320974 -3.6396160945111293 0.15481312833167782 AFESDVFHNR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFESDVFHNR 10 0 O14545;F8VNX8 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 0 ; 121.8 0.00050553 1471020000.0 1185620.0 1611400.0 1528900.0 1641730.0 1573620.0 1519940.0 1453720.0 1273860.0 1476150.0 1446700.0 False True 1179236.7536547661 1665034.474888132 1744155.83056297 1849572.8496696304 1774011.179423518 1414870.1253539037 1383398.0098503076 1368921.9017300128 1112372.6118966013 1354370.3674178168 0.8706900136209029 1.2293789903736698 1.2877982806787933 1.3656329864894674 1.309841991600695 1.0446700248259515 1.0214325734900962 1.0107441322272426 0.821320842996146 1.0 20.36919088295755 2.5530767495325453 3.907557431030178 0.9755130015743122 1.2255685324171386 0.4284914018780436 0.13605563421690464 0.23443888984434383 6.80254353084361 0.04810852460914055 0.044013672684355847 357.33598181944967 -2.5530767495325453 0.2500555308428264 AFEVMDEFDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AFEVMDEFDGR 11 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 0 ;;; 205.59 4.7467e-06 321150000.0 724770.0 889650.0 796790.0 831920.0 782370.0 835620.0 870640.0 732980.0 918600.0 828750.0 False True 720867.9188495165 919261.4624452182 908971.1061771659 937240.9867013218 882000.1820297003 777855.5562378976 828523.8170322159 787678.6895970242 692223.3386093663 775858.4654714287 0.9291229662764604 1.1848313878829106 1.1715682004253893 1.2080051045545188 1.1368055145132399 1.0025740400541423 1.0678801017254953 1.0152350262987893 0.8922031136036599 1.0 19.56543396990856 2.157082422976626 1.0914448093346762 0.963815777426 1.1327298095129885 0.3760465109324672 0.08287497725326497 0.5328710546509855 1.195914719631629 0.06009789945277671 0.031621211233329054 143.57618948864018 -2.157082422976626 0.16891403208698852 AFFESHPAPSAER ddPTM_BT-474_Trastuzumab_2h_R1 3 AFFESHPAPSAER 13 0 E9PLK3;P55786;P55786-2;H0YDG0 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ;; 152.4 4.5203e-05 1992450000.0 1670060.0 2143670.0 2143580.0 1903800.0 1663540.0 1822350.0 1898090.0 1543230.0 2408400.0 1800190.0 False True 1661068.582521109 2215020.760074118 2445377.4316686345 2144820.8847989906 1875381.9584259219 1696375.233850473 1806272.1352920618 1658393.658963157 1814882.0909065937 1685300.3329798002 0.9856217019693773 1.3143181169125582 1.4510039450030445 1.2726638942785387 1.1127879830831315 1.0065714701729698 1.0717805603814068 0.9840344931463527 1.0768894157266784 1.0 20.684574282565514 3.099872202797456 3.3067418432748665 1.028519722444526 1.2744405598031008 0.4791472642106691 0.1113626501956191 0.20289292848430499 4.402924804223635 0.03437333950449081 0.04190869501398235 1258.555009951129 -3.099872202797456 0.24592083735857484 AFFSEVER ddPTM_BT-474_Trastuzumab_2h_R1 8 AFFSEVER 8 0 Q9UQ80;Q9UQ80-2;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;;;;;;; 234.63 3.3636e-08 6107630000.0 2778500.0 3534137.0 3397345.0 3247959.0 2791525.0 3243347.0 3262439.0 2836252.0 3820300.0 3272369.0 False True 2763540.8647203725 3651768.6136140716 3875661.645747895 3659150.276379264 3147009.1620850256 3019142.0559076103 3104622.361842741 3047907.5264358358 2878838.2543973015 3063523.6088039465 0.902079179928144 1.1920158222772066 1.2650993237362453 1.194425355777774 1.0272514803023416 0.9855129065208466 1.0134155169950982 0.9949025748248738 0.9397147278787418 1.0 21.546760538698216 3.1149825919744973 5.019014344977536 0.990939442482671 1.1506201146538475 0.3828964766138617 0.09055007365969146 0.21406846569254445 8.545680656715609 0.026981127085164765 0.03258477438866265 1303.1145440657092 -3.1149825919744973 0.15968067217117654 AFFSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AFFSGR 6 0 P51659-3;P51659;P51659-2;A0A2R8Y7L2;E7ET17;E7EPL9 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 96.666 0.097591 446020000.0 423410.0 458160.0 436980.0 361850.0 360830.0 500660.0 531010.0 445920.0 667720.0 490700.0 False True 421130.40760527307 473409.5786364312 498502.9857017514 407660.17289868393 406779.5616930316 466050.5526268703 505323.0176448101 479196.8147358796 503169.35298959934 459383.10589059355 0.9167302893928565 1.0305332794479782 1.085157419394684 0.8874078468958153 0.885490903946977 1.0145139136611276 1.1000034854680911 1.043131122131437 1.0953153186034532 1.0 18.809338276089473 2.4776590291952703 22.622512311670846 1.0617311003923406 0.9659531312174239 0.3487798264255101 0.0634003476722449 7.124551397979204 299800.0198848287 0.02290659540304178 0.019421247647595244 300.3717115396835 -2.4776590291952703 -0.09577796917491677 AFGFSHLEALLDDSK ddPTM_BT-474_Trastuzumab_2h_R1 3 AFGFSHLEALLDDSK 15 0 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ;; 229.97 3.9063e-13 8651520000.0 8091058.0 7828615.0 7095187.0 6386482.0 6144019.0 8467354.0 8450597.0 7237648.0 11967914.0 8216326.0 False True 8047496.64272906 8089185.7177773025 8094127.657129041 7195009.966379254 6926423.401196279 7882025.747987341 8041809.33869451 7777758.04579185 9018581.95653143 7691953.040329411 1.046222799402897 1.0516426290390977 1.0522851107762883 0.9353944217619827 0.9004765584085849 1.0247105912713412 1.0454834157893034 1.0111551650162915 1.1724697107803983 1.0 22.874918524319888 1.4179297127299146 22.595606481817086 1.0880961990404614 1.0076406293982525 0.20011976994782554 0.06222927967959708 46.0840016851073 17592.46808662018 0.0415488576815882 0.015562181942100344 26.17759309431223 -1.4179297127299146 -0.0804555696422089 AFGFSHLEALLDDSKELQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFGFSHLEALLDDSKELQR 19 1 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ; 191.99 5.077e-15 350620000.0 501580.0 747280.0 661780.0 832000.0 757140.0 768670.0 873150.0 683290.0 1285140.0 927330.0 False True 498879.54901077645 772152.7630597007 754952.8717051226 937331.1146931184 853557.2910796267 715533.6521545494 830912.3987430851 734280.5694763161 968434.4669937324 868147.0054728431 0.5746487010446553 0.8894262817149748 0.8696140940945037 1.0796916982770604 0.9831944194920421 0.8242079367247582 0.957110251495393 0.8458021105266434 1.1155189857117194 1.0 19.72757983290067 4.961144035216013 1.6677583210800373 0.9503223935368669 0.24897034022645576 0.6224046799622992 0.08958735274226441 1.2402692878636996 2.122016628686888 0.02313065743444035 1.6601283818564994 91441.64604600884 -4.961144035216013 -0.7013520533104112 AFGPGLQGGSAGS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 6 AFGPGLQGGSAGSPAR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 AFGPGLQGGSAGS(1)PAR;AFGPGLQGGS(0.012)AGS(0.988)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR 243.01 5.8915e-20 988400000.0 789339.0 838094.0 802233.0 848405.0 789693.0 926691.0 907740.0 816456.0 1145404.0 927529.0 True False 785089.2865278067 865989.4521514779 915180.433265762 955812.9860110757 890255.7226728786 862631.0323659722 863829.1482964535 877384.0925995623 863134.5318272632 868333.3051224706 0.9041335647226809 0.9973007450512772 1.0539506291730731 1.1007443574633669 1.0252465469435335 0.9934330829845411 0.9948128710491165 1.0104231720972803 0.9940129288321214 1.0 19.727889394235778 4.700460996958325 3.4896105444265038 1.0219996886478595 0.8943174370200099 0.5451526423679187 0.03203420701434874 0.21364032480053943 4.539869695833157 0.008638561786776876 0.06756320373856037 50171.95186759541 -4.700460996958325 -0.12768225162784963 AFGSGIDIKPGT(ph)PPIAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFGSGIDIKPGTPPIAGR 18 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 AFGS(0.006)GIDIKPGT(0.994)PPIAGR;AFGS(0.002)GIDIKPGT(0.998)PPIAGR 110.98 0.00051411 4640400000.0 4871700.0 4390900.0 3935000.0 3955300.0 3993100.0 5041200.0 5327200.0 5162900.0 6898000.0 5299600.0 True False 4845471.308496754 4537048.452144897 4489013.796366863 4456040.574453957 4501597.616042028 4692713.709708351 5069502.984119757 5548181.814674993 5198080.328464416 4961374.990784168 0.9766387982156746 0.9144740037938143 0.9047922813142075 0.8981462966881404 0.9073286386140569 0.945849430535918 1.021793957025308 1.1182750396776755 1.0477096244730406 1.0 22.242308572492952 2.1929603704516074 2.942893217224761 1.0687549363349267 0.9188757828083365 0.7494853635492948 0.03487026227945373 0.10867052042640685 1.923288243202234 0.01440235449068255 0.010127809551144878 155.94101995184707 -2.1929603704516074 -0.1498791535265902 AFGSGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 AFGSGYR 7 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;; 145.88 0.005249800000000001 537340000.0 544340.0 622850.0 610100.0 589540.0 581140.0 593450.0 615310.0 522410.0 659190.0 584600.0 False True 541409.333921859 643581.1857292242 695996.7769157358 664175.7035531014 655144.7343133552 552426.1983310357 585545.1045875368 561394.8869442292 496741.4571934555 547290.3274987591 0.989254344026547 1.1759410926747713 1.2717140098137654 1.2135710612473911 1.1970698208892439 1.0093841797931065 1.0698985075501162 1.0257716220016735 0.9076379249450224 1.0 19.0619468338273 2.7349221289782926 24.37069552957839 1.0115196303976555 1.1779931782946345 0.5322584523381868 0.07783298967736792 185.9943781210508 1245788.8050939352 0.0256012768254248 0.02503767603852264 543.1529329121104 -2.7349221289782926 0.166473547896979 AFHAALRNS(ph)PVNTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFHAALRNSPVNTK 14 1 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 1 AFHAALRNS(0.998)PVNT(0.002)K 118.31 0.00015319 364320000.0 187570.0 204130.0 235600.0 221810.0 212770.0 240130.0 261880.0 218050.0 311030.0 284700.0 True False 186560.14396098608 210924.343650809 268770.43212808936 249891.12325730833 239864.99831340564 223530.378305218 249211.86392124958 234321.99823546485 234380.8240884728 266530.2022560673 0.6999587378159475 0.7913712662408319 1.0084051632912872 0.9375715065012666 0.8999542876681449 0.8386680999493729 0.9350229798040702 0.8791573947418588 0.8793781046370602 1.0 18.023939497763514 4.4405923730849075 5.883964830288926 0.9135706565643636 0.7203041198549094 0.6693152610733346 0.051152008413189266 0.08886334022147503 8.230281775668882 0.012442163174598802 0.03671988680809016 27579.880054318706 -4.4405923730849075 -0.19326653670945426 AFHFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFHFDK 6 0 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 97.64 0.040842 302320000.0 288820.0 379630.0 321090.0 274780.0 276750.0 340990.0 336780.0 300960.0 477040.0 342440.0 False True 287265.0252109184 392265.75505881873 366296.6810356883 309567.11982617195 311992.4720742358 317418.16390411963 320488.66477546387 323419.1634439145 359479.8840085045 320585.1860223663 0.8960645648513427 1.2235928925033095 1.1425876709416414 0.9656313932253076 0.9731967841223611 0.9901211214481205 0.9996989216872433 1.008840013653502 1.121324065122038 1.0 18.290348235718877 3.7382021251137467 24.99997336271269 1.0062078158875627 1.1010328284470816 0.14290371498852683 0.08665697079202517 51.27527502070477 3575827.525332996 0.021862096602572333 0.03632941229196872 5472.706089959126 -3.7382021251137467 0.09482501255951892 AFHITNDEPIPFWTFLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFHITNDEPIPFWTFLSR 18 0 Q15738 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating 0 ; 173.37 8.4766e-12 375460000.0 139437.0 217500.0 236490.0 166135.0 229300.0 230150.0 195722.0 187042.0 208828.0 203085.0 False True 138686.28668490722 224739.3560184735 269785.73639207066 187167.6739657949 258499.99583241958 214240.27221482486 186254.17912935247 201000.0238200313 157365.1375518365 190123.9414301841 0.7294519861184057 1.1820676256125304 1.4189992820611674 0.9844508406350562 1.359639369391803 1.1268453126062326 0.9796461073144087 1.0572052225933946 0.8276976395927651 1.0 17.536580689788686 2.2709768137697948 5.073132397823733 0.9795732273419606 1.1537746596894913 0.15512083720055914 0.18760950995078204 0.3520802822740204 22.26926303109422 0.06701659623668242 0.053780192084729665 186.6280050715314 -2.2709768137697948 0.17420143234753072 AFHNEAQVNPER ddPTM_BT-474_Trastuzumab_2h_R1 6 AFHNEAQVNPER 12 0 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 ;;;;; 211.38 3.2593e-08 11716570000.0 4876960.0 5617630.0 5375440.0 5466310.0 5366920.0 5823220.0 5440090.0 4801340.0 5942370.0 5536990.0 False True 4850702.989241193 5804609.418620959 6132255.227837937 6158344.285526602 6050365.449772915 5420674.507785419 5176932.06353807 5159640.371510502 4477952.537178472 5183614.557744363 0.9357761722453307 1.1197995826963685 1.1830075634532464 1.1880405491040964 1.1672097495624203 1.0457325573497525 0.9987108427658246 0.9953750059988462 0.8638668032306479 1.0 22.30552701588303 2.280772367940837 1.8232172695720714 0.9559865845350328 1.1253223777417702 0.4751873614377924 0.07638665269102961 0.3130318307937066 2.1030459993425654 0.03902987569380615 0.02585032232115665 190.8852486200552 -2.280772367940837 0.16933579320673742 AFHNEAQVNPERK ddPTM_BT-474_Trastuzumab_2h_R1 4 AFHNEAQVNPERK 13 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 ;;; 206.18 4.1499e-08 1947500000.0 1381360.0 1641260.0 1463300.0 1528880.0 1505620.0 1611170.0 1771540.0 1488830.0 2512910.0 1924010.0 False True 1373922.911243523 1695888.3469373807 1669319.9207683937 1722436.0512404013 1697351.7824910928 1499793.6101862246 1685843.8422600054 1599934.0547255543 1893637.0017688458 1801218.0345721655 0.7627743476207556 0.9415230773770243 0.9267728219059826 0.9562618284851468 0.9423355473421386 0.8326552262966117 0.9359465705441017 0.888251185595962 1.05130915048751 1.0 20.78054139707414 7.999999999920895 0.07603284489149413 1.08023109288507 0.5165683234968316 0.3079163439482977 0.06413481088705686 322.7214839007938 1.796567155305656 2.1262209243838424 19.22691316817636 99999999.98178546 -7.999999999920895 -0.5636627693882384 AFHPTYEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 AFHPTYEEK 9 0 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 0 ;;; 158.87 6.648e-05 2087750000.0 3513070.0 3709430.0 3903260.0 3311270.0 2791740.0 3817260.0 4021550.0 3278680.0 5973410.0 3987890.0 False True 3494156.0214587734 3832896.135152213 4452805.0802558875 3730476.4424878354 3147251.541060621 3553381.801063492 3827012.2626871117 3523351.7503996994 4501343.145093161 3733379.4459956014 0.9359230884518268 1.0266559267805881 1.1927009147253804 0.999222419379075 0.8430033931954981 0.9517869406161825 1.0250799089795013 0.9437432763976947 1.205702021507959 1.0 21.832050715263883 -0.7904698294151746 5.979981910290983 1.0001167929627823 1.007828112326936 0.0 0.10660357371869868 0.0 2.5696743694467587e-10 0.10312354893388542 0.024306452135116053 0.16200565358709484 0.7904698294151746 0.00771131936415359 AFITNIPFDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFITNIPFDVK 11 0 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 149.96 7.9362e-05 209950000.0 300010.0 294330.0 263370.0 290070.0 269370.0 326080.0 319440.0 285690.0 404330.0 317230.0 False True 298394.77949424443 304126.5961237576 300450.206746922 326792.8322584526 303672.67281892244 303538.8571097551 303987.4668206961 307009.6385044252 304688.28924442135 296984.1098057328 1.0047499837261813 1.024050062216113 1.0116709844962968 1.1003714389709898 1.0225216191450945 1.0220710370945771 1.0235815883198074 1.033757795005431 1.0259413860348559 1.0 18.18002621584079 -0.0442711844925872 0.7258690639501638 0.9988054980192019 1.0317059068166676 0.11599962355446414 0.024793420256517876 12.05606095821999 6.452033432254095 0.06455495058265828 0.008752803601625312 0.9030853881982321 0.0442711844925872 0.0329004087974657 AFKPEETSSNSDPPS(ph)PPVLNNSHPVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 AFKPEETSSNSDPPSPPVLNNSHPVPR 27 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNSDPPS(1)PPVLNNSHPVPR 205.58 1.8459999999999998e-25 2105580000.0 1666020.0 1783020.0 1632900.0 1585160.0 1536140.0 1916960.0 2021640.0 1786740.0 2220370.0 2000950.0 True False 1657050.3334322216 1842366.7428416484 1862798.1265787638 1785841.0934698817 1731758.3235848828 1784445.0672384563 1923845.5497852264 1920075.611681881 1673189.56493368 1873247.6579005166 0.8845868972228675 0.9835147718302882 0.9944217032501381 0.9533395576062816 0.9244684312194944 0.9525943137910619 1.0270107861452866 1.024998271629416 0.8932025393849652 1.0 20.837110217012604 2.3261684663364477 11.570840121339081 0.9936707157643131 0.9515004219852747 0.1328932823009329 0.045062370923119904 0.8839306507768734 111.37458268257137 0.015773664188253402 0.013192516095104056 211.91830240369225 -2.3261684663364477 -0.04217029377903836 AFLASLS(ph)PAMVVPEDQLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 AFLASLSPAMVVPEDQLTR 19 0 Q9H211;H3BSY1 Q9H211 CDT1 DNA replication factor Cdt1 1 AFLAS(0.003)LS(0.997)PAMVVPEDQLTR 100.41 0.00067211 19123000.0 18505.0 17778.0 23305.0 21323.0 17300.0 22580.0 25131.0 18930.0 21646.0 24337.0 True False 18405.37113609879 18369.72998297205 26586.14142930867 24022.489613703558 19503.052454866385 21019.09774760265 23915.317520257086 20342.65272459228 16311.63334153968 22783.79182404604 0.8078273923076202 0.8062630717852951 1.1668883579444238 1.054367499458549 0.8560055589290824 0.9225460761724074 1.049663625130951 0.8928563288189204 0.7159314598514004 1.0 14.475720249093659 1.4943967429028242 8.147984937644857 0.8404728057184897 0.9544989993886929 0.08271228213552517 0.1262267640846643 0.2302391372131667 39.37385365546309 0.07032253295629494 0.03229926990195502 31.217400985106615 -1.4943967429028242 0.11402619367020317 AFLDFHALPYQVVEVNPVRR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFLDFHALPYQVVEVNPVRR 20 1 Q9H7Z7 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 ; 101.92 0.00019962 228522000.0 230260.0 332300.0 311850.0 284980.0 324160.0 348730.0 308990.0 255060.0 357070.0 266470.0 False True 229020.30574429093 343360.4046204079 355755.76935120806 321058.43878034194 365439.8545531493 324623.11592212046 294042.9732435733 274093.87236843683 269074.8829928656 249463.65646355506 0.9180507853966665 1.3763944996555861 1.4260825580546301 1.286994840578096 1.4649021814788383 1.3012842051785836 1.1787006468676968 1.0987326821631835 1.078613561619849 1.0 17.928470123831087 1.914998488604692 1.8665621899737022 1.0526043980710542 1.312650496398447 0.3574989486134911 0.14192014829838367 0.36880149634179676 2.3889622638067705 0.0894962953691997 0.04230836161362976 82.2239788451997 -1.914998488604692 0.2600460983273929 AFLDFYHSFLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AFLDFYHSFLEK 12 0 M0QZR4;Q92888;Q92888-3 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 0 ; 197.31 1.9637e-07 136096000.0 336350.0 355120.0 336830.0 293380.0 288770.0 357290.0 360110.0 307120.0 498050.0 383780.0 False True 334539.128971998 366939.9545254272 384252.7362211558 330521.8779190711 325543.1478261141 332591.3832701928 342690.1035462093 330038.8539237601 375312.25102808047 359286.8318294114 0.9311199279656218 1.0213008716658156 1.0694873905192221 0.9199387470899635 0.9060814897348681 0.9256987838288113 0.9538064665529346 0.918594350489477 1.0446034137045077 1.0 18.454776534735025 3.7163938715124023 24.914865894730553 0.9448132920412612 1.008702559841371 0.18238028669692197 0.05111633117922136 1014.4122595031796 1140174.2187816605 0.0133587117329189 0.02071322496923737 5204.678066079359 -3.7163938715124023 0.06388926780010984 AFLEILHTYQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFLEILHTYQK 11 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 0 129.89 0.0002356 220460000.0 209750.0 246190.0 240560.0 213330.0 167180.0 226620.0 229010.0 171980.0 314520.0 240040.0 False True 208620.72930541562 254384.28532500233 274428.75701499655 240337.5561267824 188469.3820465065 210954.29280609905 217931.9113968435 184814.02089674512 237010.7603520769 224720.44169141664 0.9283567072722786 1.1320033167001324 1.2212006836113234 1.0694957446586502 0.8386837469165817 0.9387410029025259 0.969791220400434 0.8224174868369539 1.0546915917757815 1.0 17.777771839655404 3.37130167480246 6.523144884783372 0.9243023476033605 1.1051264947675383 0.37578308023348794 0.09397275709666866 0.19188671583855393 10.4722021262392 0.02575506335670528 0.034967191924589976 2351.265517762216 -3.37130167480246 0.18082414716417783 AFLLMASQYQQPHENDVAALLKPISEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AFLLMASQYQQPHENDVAALLKPISEK 27 1 P40123;A0A087X0J3;A0A087WZ15;P40123-2 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 0 ; 221.46 1.5334999999999996e-34 376410000.0 374290.0 340110.0 380520.0 323180.0 254206.0 451070.0 424890.0 425450.0 639170.0 500670.0 False True 372274.86422752845 351430.35574916296 434093.9084608678 364094.5548636083 286577.6273029922 419888.5926045672 404336.44746257755 457199.2393913258 481655.11793919967 468716.8119548477 0.7942426103192354 0.7497711769361856 0.9261325759799818 0.7767900480144975 0.6114088933737643 0.8958257563951338 0.8626454975579753 0.9754274387652402 1.0276036738054926 1.0 18.83835701682981 1.9280776023263455 1.511624091376925 1.0139614293134236 0.7833750575008703 0.5975227339535334 0.07817296056984253 0.28256829950228646 1.2027978750712363 0.055954442809878255 0.02532729430998981 84.73788153105109 -1.9280776023263455 -0.23058637181255326 AFLQAILEHEEENEEEDEVPDDETLNQMIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AFLQAILEHEEENEEEDEVPDDETLNQMIAR 31 0 F6VDE0;P51531-2;P51531;A0A0U1RQZ9 F6VDE0 SMARCA2 Probable global transcription activator SNF2L2 0 165.31 1.4342e-12 19611000.0 21444.0 22334.0 19998.0 24601.0 19042.0 19445.0 22962.0 19675.0 22505.0 20968.0 False True 21328.547886652377 23077.373688811895 22813.54457426796 27715.484077602654 21466.885829223454 18100.81291860644 21851.240336641724 21143.248407625622 16958.944301549975 19629.804288392035 1.0865389982143063 1.1756293312847015 1.1621890997537152 1.411908324220636 1.0935863401306434 0.9221086798766631 1.1131664898749563 1.0770992974254232 0.8639385320605841 1.0 14.26075816857494 3.0068316641422843 24.9991582226192 1.0153565860817646 1.209506912971998 0.4874222108981029 0.10232862201732318 159.19458745968427 582535.6262285899 0.029899445145485596 0.03566267121041532 1015.8548634472386 -3.0068316641422843 0.19415032689023337 AFLQAILEHEEQDEEEDEVPDDETVNQMIAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AFLQAILEHEEQDEEEDEVPDDETVNQMIAR 31 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532-3;P51532-5;A0A2R8YF58;A0A2R8YF80;A0A2R8Y440;A0A2R8Y4C5 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 0 ;; 171.08 7.1127e-13 307204000.0 50181.5 63227.0 60747.0 64522.0 64639.0 59972.0 54969.0 57023.0 61534.6 61818.0 False True 49911.328379688755 65331.47247347139 69299.64957761046 72690.47858441033 72870.39350463064 55826.27679890285 52309.93946802799 61278.345816926914 46370.22235139555 57872.7223149475 0.8624327037540713 1.128881964769738 1.1974492784437683 1.256040422443298 1.2591492259179504 0.9646388586161931 0.903879018915916 1.0588467824866743 0.8012448783564297 1.0 15.820595889182066 2.6663824236632823 8.923196736092471 0.9544600129910518 1.149560368159726 0.3900400683496441 0.12149037880866177 0.44860822024371516 52.59443096229093 0.04039386869830602 0.038075052616607506 463.85519368754404 -2.6663824236632823 0.1951003551686742 AFLS(ph)PPTLLEGPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AFLSPPTLLEGPLR 14 0 Q96PC5;Q96PC5-11;Q96PC5-10;Q96PC5-9;Q96PC5-13;Q96PC5-6;G3V599;Q96PC5-14;Q96PC5-7;Q96PC5-12 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 AFLS(0.938)PPT(0.062)LLEGPLR;AFLS(0.924)PPT(0.076)LLEGPLR;AFLS(0.949)PPT(0.051)LLEGPLR 115.1 0.00046056 652056000.0 378067.0 507630.0 495245.0 413621.0 462305.0 513357.0 437827.0 380871.0 531993.0 478900.0 True False 376031.5292791927 524526.1576811855 564971.1912532927 465985.3761904834 521176.8014535848 477869.8389023943 416647.63534843747 409293.52804374974 400890.45349097846 448336.1919930827 0.8387266876839476 1.1699393603478667 1.2601507559354244 1.0393659591007836 1.1624687249465373 1.065873885349339 0.9293196551815872 0.9129165464519641 0.8941737487415776 1.0 18.77422144025725 2.2964844378820692 3.9034292083840834 0.9239500720621994 1.105214192986307 0.33528343176090103 0.10667094348603365 0.23013640173185254 7.120567876780832 0.03910022227463283 0.031090073477756244 197.91760999503055 -2.2964844378820692 0.1812641209241077 AFPEHFTYEPNEADAAQGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 AFPEHFTYEPNEADAAQGYR 20 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 0 ;; 257.37 3.2258e-36 734680000.0 778970.0 889280.0 838490.0 838510.0 735010.0 924440.0 945190.0 727630.0 922210.0 879520.0 False True 774776.1120717038 918879.1472188882 956542.1037142688 944665.2800256318 828609.166754414 860535.6386976872 899467.5487235591 781929.4454302735 694943.702480888 823388.2806050451 0.9409608204556664 1.1159730698907617 1.161714498791966 1.1472901695072335 1.0063407341012096 1.0451152378138602 1.0923978029692252 0.9496484998009607 0.8440048502636289 1.0 19.651213389171648 1.6442861240048852 4.267348469683108 0.9149833522661012 1.0771340680531245 0.4525902188047385 0.07137214705988615 0.14128532104589547 5.921982100778927 0.04083248831792721 0.018830094797564517 44.08452076389898 -1.6442861240048852 0.16215071578702334 AFQYVETHGEVCPANWTPDSPTIKPSPAASK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFQYVETHGEVCPANWTPDSPTIKPSPAASK 31 1 P30048-2;P30048 P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial 0 117.21 2.4346e-05 508000000.0 220830.0 172680.0 148670.0 136100.0 171050.0 326830.0 193910.0 161850.0 292520.0 224380.0 False True 219641.0758165193 178427.54941273562 169601.4437371944 153330.2460453528 192832.2036072195 304237.011375065 184529.83249186442 173928.0688576474 220432.36556718053 210059.87629861728 1.0456117545469823 0.8494128081799224 0.8073957136682881 0.7299359056433097 0.9179868473934202 1.4483347164432643 0.8784630160856621 0.8279928176783006 1.0493787269198327 1.0 17.680441092453933 2.993208905450719 24.99730184066785 1.018325287462449 0.85011246842512 0.19753918482551225 0.17218703001726163 604.145556909267 2223807.990041775 0.054232070903927204 0.06259456124359908 984.4845511785378 -2.993208905450719 -0.1682128190373291 AFS(ph)EDEALAQQENR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFSEDEALAQQENR 14 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 AFS(1)EDEALAQQENR;AFS(1)EDEALAQQENR 311.81 1.0022e-55 699920000.0 474460.0 482450.0 464410.0 483540.0 434280.0 521270.0 504970.0 489400.0 605190.0 511090.0 True False 471905.5600774618 498508.0566028164 529794.8912759173 544756.1144215263 489582.98382077325 485235.8318375925 480542.6719272695 525921.5131228459 456049.03363052796 478471.79863383627 0.986276644568974 1.0418755254252998 1.1072646136901318 1.138533380602471 1.0232222363338077 1.0141367437392743 1.0043280989586976 1.0991693024008753 0.9531367050945714 1.0 18.86807436848957 AFS(ph)TEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AFSTEK 6 0 Q9NZ32;H0YJD9 Q9NZ32 ACTR10 Actin-related protein 10 1 AFS(0.929)T(0.071)EK;AFS(0.985)T(0.015)EK;AFS(0.818)T(0.182)EK 99.442 0.040693 3172300000.0 5718300.0 4517230.0 4059710.0 4070070.0 4152840.0 4614480.0 5305310.0 4567300.0 7168600.0 5453700.0 True False 5687513.308162858 4667583.2698268 4631281.880368111 4585340.444686323 4681679.558188865 4295491.85891752 5048671.887047673 4908135.118279471 5401994.584318638 5105640.196852518 1.113966728730522 0.9142013713978967 0.9070913150564672 0.8980931416814399 0.9169622961435839 0.8413228690822296 0.9888420829497612 0.9613162951249868 1.0580445107841352 1.0 22.283660441478414 1.5868583220842611 2.046682955464878 1.0246386880096194 0.9296950837090193 0.1877378831205262 0.07005366353812321 0.4534066640324727 4.013580624710998 0.05377443592763152 0.019305403671034137 38.62409548674327 -1.5868583220842611 -0.09494360430060012 AFS(ph)WLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFSWLR 6 0 Q9P206-2 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 AFS(1)WLR;AFS(1)WLR 74.127 0.085117 37263000.0 177641.0 44808.0 43055.0 89928.0 27580.0 47700.0 43594.0 57942.0 91780.0 64473.0 True False 176684.6005937706 46299.40719299201 49116.76975923125 101312.87557947454 31092.149520532665 44402.61127372216 41485.1916747478 62265.92626351432 69162.04878899152 60358.277941887674 2.9272637758797675 0.767076344317984 0.8137536628616271 1.6785249519049819 0.515126517533649 0.7356507307327843 0.6873156937096402 1.0316054133198318 1.145858549105394 1.0 15.881264025040633 4.741324145631913 24.980958947520804 0.925816993767565 2.927264502590439 0.7939540293310652 0.30514775977488123 108.87983029770758 984167.8644227313 0.07213601134524007 0.5008622677883622 55121.895780120176 -4.741324145631913 2.0014475088228743 AFTHTAQYDEAISDYFR ddPTM_BT-474_Trastuzumab_2h_R1 4 AFTHTAQYDEAISDYFR 17 0 P31939-2;P31939;C9JLK0 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ;;; 297.7 3.3017999999999998e-46 3331550000.0 987590.0 1254840.0 1136070.0 1180180.0 1117190.0 1252860.0 1267070.0 1148010.0 1320220.0 1253410.0 False True 982272.9251715633 1296606.5908332027 1296018.7811025395 1329590.6669934173 1259457.5243960784 1166252.7371152104 1205776.9834225515 1233680.33567666 994869.4710416474 1173416.3007017095 0.8371052324602604 1.1049843010173157 1.1044833622368404 1.1330937419211875 1.073325403476086 0.9938951218061184 1.0275781772432258 1.05135776189483 0.8478401658871706 1.0 20.162283508016035 1.261877251705142 24.841435828221613 0.9239200965835519 1.0470517555272258 0.2261034833507155 0.08580521409218192 250.31982093935258 266690.7131301558 0.055625357528085985 0.020284078251482568 18.275835978452303 -1.261877251705142 0.12313165894367395 AFVAIGDYNGHVGLGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFVAIGDYNGHVGLGVK 17 0 P15880;H0YEN5;E9PPT0;E9PMM9;I3L404;E9PM36 P15880 RPS2 40S ribosomal protein S2 0 190.82 2.7716e-10 674680000.0 663870.0 658950.0 610490.0 531340.0 515120.0 666730.0 676970.0 667800.0 914190.0 698810.0 False True 660295.7976828916 680882.7524063135 696441.6855257958 598607.5895204821 580717.4786445536 620640.5244136008 644222.3748234626 717634.6270196905 688900.1240183946 654211.3475186586 1.0093004350769985 1.0407687897631495 1.064551521717426 0.9150064299418307 0.8876603575391071 0.9486850492086575 0.984731275706111 1.0969461623397214 1.0530238074153042 1.0 19.319397258111422 -0.6825446583905225 7.414713550940811 0.9999797660246413 1.0021709988522804 0.0 0.06393397212690367 0.0 0.0 0.07015761251136676 0.016536307852881873 0.20770901279439247 0.6825446583905225 0.0021912328276391113 AFVDFLSDEIKEER ddPTM_BT-474_Trastuzumab_2h_R1 6 AFVDFLSDEIKEER 14 1 Q07021 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial 0 ;;;;; 269.78 9.081899999999999e-26 2590804000.0 3192580.0 2950840.0 2988570.0 2558124.0 3246710.0 5778960.0 3161800.0 2697040.0 4900830.0 3716150.0 False True 3175391.5040089865 3049056.925579553 3409334.6788838888 2881982.236109635 3660159.2737421547 5379474.097408585 3008851.654751059 2898306.8200916196 3693086.114257501 3478982.125443915 0.9127357915366724 0.8764221302776876 0.979980510376684 0.8283981153659697 1.052077631262656 1.5462781651176691 0.8648655113073145 0.8330904602511571 1.0615421353411716 1.0 21.7302338359222 3.2197768552853523 24.320739955008186 1.0454484273472395 0.9035008870689833 0.149567822922675 0.18526012987127433 426.5150220145364 552239.1575757045 0.059063387441066074 0.070721209418189 1658.7344146255568 -3.2197768552853523 -0.14194754027825618 AFVDRT(ph)PPPAAVAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFVDRTPPPAAVAQR 15 1 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 AFVDRT(1)PPPAAVAQR;AFVDRT(1)PPPAAVAQR 115.57 0.00083596 1621460000.0 874420.0 1085020.0 1014150.0 1054460.0 1059670.0 940000.0 856920.0 714580.0 901150.0 786670.0 True False 869712.2198771955 1121134.2347915606 1156933.5048501769 1187954.5278837814 1194612.6933438305 875020.0125219879 815467.5058477056 767905.5881637166 679073.6572913461 736464.047097928 1.180929637100872 1.5223203891750643 1.570930053420977 1.6130516249435032 1.6220923452424587 1.1881367678029175 1.1072740197720372 1.0426925675322312 0.9220730597335587 1.0 19.490255571538285 2.517590235019457 2.8948987996781 1.0270846189552965 1.51219776058186 0.7671669809725883 0.12602489932222205 0.13014860755249458 2.1892167231738493 0.047412670218023825 0.04166723854198456 329.2988659062078 -2.517590235019457 0.4851131416265635 AFVEDS(ph)EDEDGAGEGGSSLLQK ddPTM_BT-474_Trastuzumab_2h_R1 3 AFVEDSEDEDGAGEGGSSLLQK 22 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 1 AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK 297.99 8.2122e-56 845060000.0 461791.0 457320.0 389051.0 389616.0 423759.0 492390.0 474220.0 478080.0 636510.0 537400.0 True False 459304.7685658035 472541.6197442218 443825.99910808686 438941.3456517711 477722.1968336253 458352.2382613852 451280.1669036776 513756.7572410507 479650.6392970265 503102.67190871254 0.9129444032234117 0.9392548402723728 0.882177781772184 0.8724687229079486 0.9495520964363066 0.9110510912662231 0.8969941765396983 1.0211767615781444 0.9533851956645116 1.0 18.940493326034414 1.7478680286912536 21.397176649657066 0.9904112624977148 0.9095320644771888 0.6643216715168045 0.026809606837971643 0.48268277145548744 1115.8378690850122 0.012239827276433317 0.006784095969927358 55.95875309012159 -1.7478680286912536 -0.08087919802052601 AFVGFEYEDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 AFVGFEYEDSR 11 0 Q8ND04;Q8ND04-2 Q8ND04 SMG8 Protein SMG8 0 ;;; 139.39 9.0939e-05 815310000.0 674050.0 784390.0 685470.0 830650.0 713890.0 750260.0 699810.0 688870.0 971490.0 898870.0 False True 670420.989693995 810497.9469762316 781978.2177879515 935810.2048315363 804799.6599424612 698396.292122071 665957.5167661901 740276.9774109811 732079.3067990567 841503.3470386759 0.7966943828010492 0.9631547513488152 0.9292633481967736 1.112069498148444 0.9563831953546255 0.8299388167376741 0.7913902174123881 0.8797077040942032 0.8699660071172717 1.0 19.682609484252875 2.7530376274079806 21.944690582625878 0.861075719992711 0.959843554185636 0.15254914104305717 0.08734998551359692 240.22010452749896 364130.8686868557 0.02668156961131706 0.028130552411206478 566.2883503103673 -2.7530376274079806 0.09876783419292501 AFVHWYVGEGMEEGEFSEAR ddPTM_BT-474_Trastuzumab_2h_R1 39 AFVHWYVGEGMEEGEFSEAR 20 0 P68363;P68363-2;P68366-2;P68366;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 328.85 9.046099999999995e-80 32358285000.0 14047210.1 16369351.200000001 15538433.8 16514158.2 15970034.1 16704847.5 16829518.9 14412963.1 16999171.3 16864597.8 False True 13971581.481613362 16914195.159210257 17726110.216552254 18604848.93488522 18003723.28082688 15550080.711306285 16015410.775801495 15488531.594065657 12809953.31034021 15788284.72989542 0.8849334630479462 1.0713130304258387 1.122738189727952 1.1783958329340602 1.1403216745094853 0.9849126094022049 1.0143857328260624 0.9810142050920722 0.8113581386130133 1.0 23.91235110671481 1.9704747619604615 1.3768255109512926 0.9181270962421713 1.080557256870029 0.32010844687218765 0.08945583932696623 0.5006577884705751 1.7630149754914919 0.06558461816647354 0.030189034637345125 93.42750734012517 -1.9704747619604615 0.16243016062785776 AFVRPSGTEDVVR ddPTM_BT-474_Trastuzumab_2h_R1 4 AFVRPSGTEDVVR 13 1 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A087WT27;A0A494C1E2;A0A494C1Q4;J3KN95;H0Y8I3 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ;;; 225.13 1.1823e-11 3060560000.0 2186000.0 2758680.0 2754050.0 2627650.0 2107690.0 2269360.0 2637650.0 1988410.0 3014910.0 2326620.0 False True 2174230.8188874307 2850500.9961427236 3141796.3013682687 2960310.220580975 2376091.8282426186 2112484.484698828 2510056.792698504 2136795.2511413936 2271925.8282242194 2178133.119680403 0.9982084195140724 1.3086899833564705 1.4424262103086078 1.3591043604420932 1.0908845776107854 0.9698601364680559 1.1523890665905692 0.9810214223522414 1.043061054302126 1.0 21.054660698417518 3.122287383256921 5.232483618042458 1.0343330044874282 1.2900997333121484 0.5017044396147952 0.11674467733478204 0.1713795906228987 7.174696026241639 0.03476904905239498 0.041978659679711865 1325.2181743216522 -3.122287383256921 0.2557667288247203 AFVSMVYSEEGAEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFVSMVYSEEGAEDR 15 0 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 ; 182.08 1.3061e-06 145832000.0 112713.0 113773.0 116698.0 119884.0 108859.0 124102.0 116759.0 117980.0 148837.0 140709.0 False True 112106.16573159168 117559.86552776906 133128.06404280054 135061.30210801653 122721.54839215617 115523.12084468498 111110.92110730549 126784.26669030104 112158.11566362118 131728.83115296415 0.8510374285596861 0.8924383864854761 1.0106220701845565 1.0252979619259106 0.9316225409276677 0.8769767395152772 0.8434821757302542 0.9624640678932203 0.8514317988093483 1.0 17.00721161357129 2.992721319517585 24.355681626071274 0.9041523477648872 0.9498855220923914 0.06884573475580125 0.06498688500330822 621.0321807370824 2078091.7658043175 0.019770463195498432 0.02272080683623211 983.3798826236366 -2.992721319517585 0.045733174327504234 AFVYLSNLLYPVPLVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AFVYLSNLLYPVPLVHR 17 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ; 111.74 0.00049482 304870000.0 103119.0 144767.0 138393.0 147335.0 154201.0 150105.0 138382.0 124547.0 147014.0 123663.0 False True 102563.81876159806 149585.48208150035 157877.53146648 165987.5958934021 173837.58332906655 139728.59465916292 131687.93398942397 133841.32957685116 110784.36958667247 115770.72146677908 0.8859219106709048 1.2920838722113739 1.3637086256889541 1.433761436314733 1.5015677636504148 1.2069424193686022 1.1374891019160869 1.156089621634236 0.9569290765667599 1.0 16.820910914849446 1.7374817884995857 1.2754296466247113 0.9892761139508498 1.3007945024128542 0.3369820153206162 0.15957211637056437 0.5058767757329692 1.552704491165591 0.13669307483678833 0.05309471331104123 54.63636384457966 -1.7374817884995857 0.3115183884620044 AFWMAIGGDRDEIEGLS(ph)S(ph)DEEH ddPTM_BT-474_Trastuzumab_2h_R1 1 AFWMAIGGDRDEIEGLSSDEEH 22 1 Q6PD74;Q6PD74-2 Q6PD74 AAGAB Alpha- and gamma-adaptin-binding protein p34 2 AFWMAIGGDRDEIEGLS(1)S(1)DEEH 64.779 0.013487 22578000.0 33992.0 42516.0 31912.0 32267.0 40747.0 44023.0 39936.0 39648.0 42705.0 44919.0 True False 33808.990848866255 43931.11935853526 36404.932215923545 36351.99889158997 45935.88892360928 40979.79362899523 38004.14310966483 42606.73508846462 32180.92496768235 42052.2309629093 0.8039761523874035 1.0446798743515693 0.8657075114048822 0.8644487595355637 1.092353196769166 0.974497492538268 0.9037366684108877 1.013186081043938 0.7652608251882381 1.0 15.359894720190328 4.768179888989845 23.39128655427694 0.948740830006404 0.8039756026525556 0.1747192400293619 0.0932538936787643 8211.727737798465 6484799.85832661 0.02113051988323285 2.1377616284001806 58638.09989197807 -4.768179888989845 -0.14476522735384834 AFWMAIGGDRDEIEGLS(ph)SDEEH ddPTM_BT-474_Trastuzumab_2h_R1 5 AFWMAIGGDRDEIEGLSSDEEH 22 1 Q6PD74;Q6PD74-2 Q6PD74 AAGAB Alpha- and gamma-adaptin-binding protein p34 1 AFWMAIGGDRDEIEGLS(0.829)S(0.171)DEEH;AFWMAIGGDRDEIEGLS(0.97)S(0.03)DEEH;AFWMAIGGDRDEIEGLS(0.975)S(0.025)DEEH;AFWMAIGGDRDEIEGLS(0.967)S(0.033)DEEH;AFWMAIGGDRDEIEGLS(0.542)S(0.458)DEEH 230.03 1.4116999999999998e-26 124674000.0 100960.0 125200.0 124428.0 129773.0 126991.0 128857.0 129928.0 102490.0 117367.0 132502.0 True False 100416.44257771061 129367.20631500165 141946.38085243592 146202.2484940744 143162.55111537204 119949.41888675086 123642.88626684014 110138.32423367472 88443.47548722576 124045.6089193304 0.8095122709503859 1.0429003286938758 1.1443079854986788 1.1786168794507907 1.1541122040722442 0.9669783552334901 0.9967534308066305 0.8878857155298427 0.7129915863828965 1.0 16.92051114072374 1.955647859153887 1.7018303521069584 0.8489193952927753 1.0682182498001878 0.31702115576177303 0.11962558212460093 0.4106612310743222 2.2130007312603985 0.07930506972593054 0.03778556652017457 90.29170607402587 -1.955647859153887 0.2192988545074125 AFWMAIGGDRDEIEGLSS(ph)DEEH ddPTM_BT-474_Trastuzumab_2h_R1 1 AFWMAIGGDRDEIEGLSSDEEH 22 1 Q6PD74;Q6PD74-2 Q6PD74 AAGAB Alpha- and gamma-adaptin-binding protein p34 1 AFWMAIGGDRDEIEGLS(0.027)S(0.973)DEEH 142.22 7.0578e-08 36675000.0 30342.0 29022.0 28539.0 33757.0 34149.0 31198.0 34481.0 27928.0 30051.0 29047.0 True False 30178.6420433131 29987.97972583052 32557.04313456514 38030.632738816814 38497.67273301922 29041.355692192545 32813.02229978847 30012.12917551047 22645.333712769527 27193.19559161214 1.1097865251490278 1.1027751271380712 1.197249621688725 1.3985348875491312 1.4157097720759968 1.067964064552622 1.2066629752742186 1.1036631967141015 0.8327573578647218 1.0 14.730958078292584 1.4680513455116586 3.1732281035544374 0.918565431770647 1.2177242990413975 0.5015089364337888 0.11671243981692003 0.20154821837542117 3.9237831428363634 0.09314354022627785 0.032798134742419244 29.379969832022297 -1.4680513455116586 0.2991588672707505 AFYAELYHIISSNLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AFYAELYHIISSNLEK 16 0 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 ; 327.57 1.870799999999999e-71 1601870000.0 2184950.0 2532400.0 2619000.0 2188180.0 1957550.0 2511000.0 2746200.0 2306910.0 3836900.0 2825200.0 False True 2173186.4719707645 2616689.403131874 2987732.4352439116 2465203.363640852 2206832.389192121 2337420.4802582036 2613355.8144972348 2479063.3384516193 2891347.4068259085 2644893.317224588 0.8216537346962608 0.9893364643824993 1.1296230421796676 0.9320615495477552 0.8343748214040841 0.8837484918714869 0.9880760775786425 0.9373018269988365 1.0931811079094627 1.0 21.334778101185208 1.252879480980295 24.927434411761332 1.046590547513423 0.9439293372237493 0.19815129091283457 0.08578710798485784 342.77720015575636 596740.5623593153 0.06037520821715223 0.021826759420021623 17.90109020363997 -1.252879480980295 -0.10266121028967368 AFYPEEISSMVLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AFYPEEISSMVLTK 14 0 A0A0G2JIW1;P0DMV9;P0DMV8;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 92.781 0.011219 79006000.0 67360.0 93338.0 97146.0 106030.0 105920.0 81720.0 101400.0 75041.0 91483.0 93618.0 False True 66997.34124439958 96444.69890598745 110823.31239183096 119453.38712849926 119408.28416297381 76070.88874818808 96494.89461438342 80640.9404704771 68938.24045939546 87643.2190895978 0.7644326844716657 1.1004239678530279 1.2644824499033531 1.3629507036520632 1.3624360835138032 0.867960916296567 1.1009966956569286 0.9201047303846489 0.7865781423308948 1.0 16.419354854285036 2.7222933045112527 24.886121856757747 0.9432599009605598 1.1828908307826727 0.3065822116749467 0.17665754964933594 1025.1767976282633 1568337.5901782354 0.06040598084538945 0.057115299789265155 527.5860509057192 -2.7222933045112527 0.23963092982211287 AGAAAGDS(ph)DEESR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGAAAGDSDEESR 13 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 AGAAAGDS(1)DEESR 114.21 0.00030984 0.0 55217.0 63366.0 57044.0 53303.0 51745.0 66763.0 54343.0 49232.0 76168.0 67743.0 True False 54919.71780718543 65475.09900444408 65075.29936466359 60051.15433472028 58334.419033356164 62147.830953197285 51714.22147958022 52905.9418350305 57397.41699890954 63419.58374229977 0.8659741134591352 1.0324113647685977 1.0261073240261507 0.9468866049126587 0.9198171225846143 0.9799470019502154 0.8154298471859525 0.8342208938174274 0.905042474452989 1.0 15.952640787819163 2.253107093297525 24.99952565407472 0.8683819114212264 0.9653933337061531 0.20439577280162324 0.06582667546497491 266.00640086408407 457157.015804344 0.022482600874749466 0.01873349296076415 179.10474565396544 -2.253107093297525 0.09701142228492665 AGAAAGDS(ph)DEESRADDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGAAAGDSDEESRADDK 17 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 AGAAAGDS(1)DEESRADDK;AGAAAGDS(1)DEESRADDK 203.77 5.6864e-12 1190770000.0 282661.0 228362.0 239076.0 201734.0 225693.0 376020.0 334468.0 317880.0 427820.0 330320.0 True False 281139.1845825892 235962.89112225565 272735.8227141555 227273.5037157472 254433.66576278355 350026.6224558699 318288.50504816155 341601.8197619329 322389.4934942949 309238.69479882024 0.9091332660212151 0.7630445189783406 0.8819589116801433 0.7349452301355861 0.8227743488838262 1.1318978780568998 1.029264805477299 1.104654189489989 1.0425263685194057 1.0 18.238361328310063 2.7484643684091825 24.67951162627493 1.0683645775804287 0.8175287301862079 0.8050593633250778 0.05880668432584556 215.13060164870467 536091.3598279654 0.016655575384858283 0.017469594555165075 560.3564411629044 -2.7484643684091825 -0.2508358473942208 AGAAAGDS(ph)DEESRADDKGVMDYYLK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGAAAGDSDEESRADDKGVMDYYLK 25 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 AGAAAGDS(1)DEESRADDKGVMDYYLK;AGAAAGDS(1)DEESRADDKGVMDYYLK;AGAAAGDS(1)DEESRADDKGVMDYYLK;AGAAAGDS(1)DEESRADDKGVMDYYLK 245.19 4.2703e-39 1141069000.0 863228.0 866383.0 883676.0 837796.0 917895.0 1441930.0 1316500.0 1174000.0 2200750.0 1390000.0 True False 858580.4763616464 895220.034415417 1008089.8997505145 943860.8876988405 1034783.4874600928 1342252.773038116 1252815.8654816148 1261609.8414512065 1658404.6510391503 1301289.009961127 0.6597923057747905 0.6879486628740218 0.7746856325026743 0.7253276408805113 0.7951988217367674 1.0314793737312917 0.9627499009762941 0.9695077971102622 1.2744322270797408 1.0 20.31150998251948 2.764017486135764 0.8066756837349811 1.084829870921615 0.6783439844449075 0.7781650855109262 0.08616799834213315 0.29766758365916524 0.41858706018680614 0.05583248462604727 0.054809595425982925 580.7878014930666 -2.764017486135764 -0.4064858864767076 AGAAS(ph)MIHYMVLISAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGAASMIHYMVLISAR 16 0 C9IYN1;Q9NV64 C9IYN1 TMEM39A Transmembrane protein 39A 1 AGAAS(0.999)MIHY(0.001)MVLISAR;AGAAS(0.991)MIHY(0.009)MVLISAR;AGAAS(0.992)MIHY(0.008)MVLISAR 50.843 0.062761 1938440000.0 3055510.0 2468540.0 1613590.0 1512910.0 1471060.0 1781910.0 1742710.0 973280.0 3195310.0 1708580.0 True False 3039059.4736590753 2550703.8616360556 1840769.4464242947 1704444.2508778432 1658390.7713442638 1658730.7558649548 1658408.4595013007 1045911.0958156995 2407868.6654603714 1599536.9616110683 1.899962018131864 1.5946514040331792 1.15081394841308 1.0655860363246068 1.0367942793106308 1.0370068311483505 1.0368053376090394 0.6538836681599707 1.505353563718305 1.0 20.60922289951886 4.4082465953478405 1.4927602375552544 1.003510741246416 2.012167303107694 0.6765559068926852 0.19515231661201934 0.34166607761758766 1.09936426645631 0.05346868527185451 0.4278245283415376 25600.39081826734 -4.4082465953478405 1.008656561861278 AGAAS(ph)PLNS(ph)PLSSAVPSLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGAASPLNSPLSSAVPSLGK 20 0 O75962-5;O75962;E7EPJ7;O75962-4 O75962-5 TRIO Triple functional domain protein 2 AGAAS(1)PLNS(0.998)PLS(0.002)SAVPSLGK;AGAAS(1)PLNS(0.703)PLS(0.132)S(0.16)AVPS(0.005)LGK 183.65 6.278600000000001e-17 347890000.0 601920.0 570580.0 546960.0 525570.0 499090.0 614770.0 596060.0 551970.0 680650.0 625660.0 True False 598679.3295995996 589571.4103771059 623967.2137384543 592107.1081120945 562646.1531618077 572272.3969129183 567226.3006296777 593160.8042468675 512912.92774272314 585729.8431455254 1.022108292083142 1.0065585991161903 1.0652815816718233 1.0108877241636203 0.9605898687699569 0.9770244825492636 0.9684094250405976 1.012686669781816 0.8756817391926693 1.0 19.1598758765865 3.379553014984267 4.649244430304743 0.9703938668217353 1.0302077548841564 0.3946844989166425 0.03697970909409876 0.22617350686249327 8.430480422376286 0.010072001103269139 0.013836869271893362 2396.365259823347 -3.379553014984267 0.05981388806242105 AGAAS(ph)PLNSPLSSAVPSLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGAASPLNSPLSSAVPSLGK 20 0 O75962-5;O75962;E7EPJ7;O75962-4 O75962-5 TRIO Triple functional domain protein 1 AGAAS(0.999)PLNS(0.001)PLSSAVPSLGK;AGAAS(1)PLNSPLSSAVPSLGK 257.73 3.2903e-36 504190000.0 446220.0 389310.0 379440.0 344150.0 340650.0 478560.0 423760.0 406960.0 474250.0 414030.0 True False 443817.60109970265 402267.94800713536 432861.8538483967 387719.3547135058 384029.7583092625 445478.27360906644 403261.10987959686 437329.4217010076 357377.4421244201 387606.2509310834 1.1450217844361175 1.0378262658066855 1.1167566384922925 1.0002918007182564 0.9907728716623386 1.1493062161380692 1.0403885616160946 1.1282826854584576 0.9220115549373893 1.0 18.56423231173923 1.0081995448815844 0.010077799381203947 8.827830408268369e-08 2.0796835790477983 0.15076046412810473 0.06802070593396431 3277.256443007968 22.48173086790655 2347.4709841178556 2288.540016648886 10.190595068264233 -1.0081995448815844 2.079683490769494 AGADGPPAPPGAPQAPS(ph)PPQGSPQDQHHFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGADGPPAPPGAPQAPSPPQGSPQDQHHFLR 31 0 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 AGADGPPAPPGAPQAPS(0.5)PPQGS(0.5)PQDQHHFLR 91.967 0.00082972 364130000.0 196950.0 250440.0 248120.0 248540.0 266080.0 261910.0 258960.0 183080.0 258730.0 260280.0 True False 195889.64308320207 258775.74400582275 283053.1393022983 280005.1385166198 299963.71082028054 243804.77816982308 246433.11547673258 196742.35926140277 194969.45830437794 243668.70756308068 0.8039179303829581 1.0619982622874593 1.1616310610135354 1.1491222706310469 1.2310309100425882 1.0005584246253991 1.0113449442946474 0.8074174202712112 0.8001415538919968 1.0 17.894561463527314 2.0011723893826328 2.446775093100357 0.8520699650236064 1.0847283902806995 0.34157806550576375 0.12065969190272684 0.29687209362449946 3.338415952019376 0.06507944227296936 0.03598249542561496 100.27031733177868 -2.0011723893826328 0.23265842525709302 AGAEDDEEKGEGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGAEDDEEKGEGTPR 15 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 AGAEDDEEKGEGT(1)PR 175.56 1.3727e-06 824940000.0 2687900.0 1767900.0 1535500.0 1290900.0 1492200.0 2099200.0 1924400.0 2030100.0 2907800.0 1907400.0 True False 2673428.645053765 1826743.4827818803 1751685.0531947422 1454327.80764104 1682222.8250376668 1954087.244985275 1831309.4200780997 2181596.370638921 2191211.652523749 1785668.0989927012 1.497158764588924 1.0230028098795907 0.9809690021246787 0.8144446375345056 0.9420691482289525 1.0943171612281024 1.0255598009009317 1.2217255669570195 1.227110264085367 1.0 20.76803252188038 -0.835213891874329 8.594725518897146 1.000000015257324 1.0812924401200925 0.020102011126995056 0.17923677611338873 0.0 0.0 0.17691966695698452 0.04170036541018312 0.14614572233007556 0.835213891874329 0.08129242486276844 AGAEDDEEKGEGTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGAEDDEEKGEGTPR 15 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 0 101.62 0.0030915 0.0 100350.0 76879.0 89941.0 74347.0 70650.0 101080.0 85512.0 82379.0 121830.0 87402.0 False True 99809.72674993315 79437.87104066317 102603.91101881367 83759.32257703044 79646.8587246422 94092.57751672615 81375.45787243733 88526.53929208606 91806.62893836173 81823.92953138311 1.219810968766193 0.970839111438607 1.2539597108870275 1.0236531422620692 0.9733932259278025 1.1499396088113498 0.9945190647587541 1.081915031447276 1.1220021998961784 1.0 16.320235202760617 4.766544355946631 23.469663997849047 1.0678875094437992 1.219811475774126 0.2260896321416136 0.08647338899138098 6332.154263848446 5310508.989652223 0.01923089819881156 1.6140554846951556 58417.68679816484 -4.766544355946631 0.1519239663303269 AGAES(ph)PTMSVDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGAESPTMSVDGR 13 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 AGAES(0.998)PT(0.002)MSVDGR;AGAES(0.998)PT(0.002)MSVDGR;AGAES(0.869)PT(0.131)MSVDGR;AGAES(0.859)PT(0.141)MSVDGR 336.12 1.3278999999999998e-62 7020800000.0 3415970.0 3798520.0 3514790.0 3526300.0 3448300.0 3725840.0 3860950.0 3341770.0 3803790.0 3402600.0 True False 3397578.7970699496 3924951.4419461717 4009641.880897657 3972729.21844032 3887420.5653246134 3468281.4504839606 3674181.0982386894 3591149.846564226 2866396.9226746415 3185443.154887582 1.0665953312828318 1.2321524042656122 1.2587391097359455 1.2471511891037095 1.2203704088581686 1.0887908783311375 1.1534285559612678 1.1273627159392714 0.8998424342548972 1.0 21.60306266170675 1.3934395497507188 3.3510479762981706 0.9509074543069763 1.184846979989222 0.6508905300572498 0.06607112450109755 0.14717210646863832 2.773502112619958 0.05378833408138803 0.01778705779327169 24.742270451423273 -1.3934395497507188 0.23393952568224574 AGAGMITQHSSNAS(ph)PINR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGAGMITQHSSNASPINR 18 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YKH2 Q9NWH9 SLTM SAFB-like transcription modulator 1 AGAGMITQHSSNAS(1)PINR;AGAGMITQHSSNAS(1)PINR;AGAGMITQHSSNAS(1)PINR;AGAGMITQHSSNAS(1)PINR;AGAGMITQHSSNAS(1)PINR;AGAGMITQHS(0.01)S(0.164)NAS(0.826)PINR 289.35 2.5411999999999996e-49 6154760000.0 849549.0 2141680.0 2492816.0 2835423.0 2849447.0 2537581.0 2592790.0 2245059.0 2017140.0 2645911.0 True False 844975.122577767 2212964.5241270983 2843782.824854903 3194387.261077528 3212307.185454431 2362163.9982931493 2467366.842280342 2412596.702758606 1520042.8752912001 2477046.6947016227 0.34112199999505866 0.8933882953682732 1.1480537815204392 1.2895950923776647 1.2968294834027647 0.9536211018329989 0.9960921800779994 0.97398111546267 0.613651280188846 1.0 21.24018963434749 4.7068910633830505 3.1390367019750265 1.0423230777721284 0.2605128257572477 0.5581061398944933 0.18411529261856 0.24242134113167907 3.8012299909901057 0.047849973263853415 0.44753557526732785 50920.31286471286 -4.7068910633830505 -0.7818102520148806 AGAHLQGGAK ddPTM_BT-474_Trastuzumab_2h_R1 12 AGAHLQGGAK 10 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;;;;;;;; 151.56 4.5555e-05 45448294000.0 63887577.0 66074899.0 62348887.0 52322592.0 48141888.0 60765581.0 70763564.0 58230964.0 87354419.0 66322603.0 False True 63543613.38400906 68274162.070095 71127068.34335913 58946626.78244375 54272472.07747413 56564999.412261516 67340460.06625415 62576454.224523745 65827092.92669447 62089837.69490286 1.0234140681161026 1.0996028433119875 1.1455508821405433 0.9493764031417794 0.8740958922160224 0.91101863867338 1.0845649234445065 1.0078372974980547 1.0601910935917684 1.0 25.887853824655664 3.7319131841471767 24.97969268699642 0.9843387648559432 1.0905306231170004 0.35297078597168086 0.06554554459629616 615.9928772347507 2314776.3043407844 0.01915051246289795 0.030431619121906936 5394.027846411091 -3.7319131841471767 0.10619185826105726 AGAHLQGGAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGAHLQGGAKR 11 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 142.43 2.4447e-05 201037000.0 238732.0 302517.0 292798.0 272576.0 293206.0 300414.0 345258.0 298874.0 372761.0 355657.0 False True 237446.69343761855 312586.0954696118 334021.4133541607 307084.093652153 330544.0461318822 279647.0872784902 328556.55152635876 321177.49553142104 280899.0462914937 332958.6657667227 0.7131416534567036 0.9388135153347104 1.0031918303882879 0.922288936210785 0.992747989816453 0.8398852951747962 0.9867787966106035 0.9646167183900365 0.843645398580186 1.0 18.344983563461028 4.737479491157577 6.491928238309251 0.9451638011552321 0.7085741471452961 0.5940193242675036 0.057152968042606604 0.07476706099173375 19.220468059065595 0.012775086420324943 0.07830075599771709 54636.07482851547 -4.737479491157577 -0.23658965400993603 AGAPGALS(ph)PSYDGGLHGLQSK ddPTM_BT-474_Trastuzumab_2h_R1 5 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;P15923-2;X6REB3;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 AGAPGALS(0.996)PS(0.004)YDGGLHGLQSK;AGAPGALS(0.999)PS(0.001)YDGGLHGLQSK;AGAPGALS(0.986)PS(0.014)YDGGLHGLQSK;AGAPGALS(0.862)PS(0.138)YDGGLHGLQSK;AGAPGALS(0.987)PS(0.013)YDGGLHGLQSK 370.23 1.443299999999999e-112 3172040000.0 3159920.0 3020370.0 3019230.0 2777470.0 2836180.0 3653060.0 3508540.0 3015330.0 4019260.0 3717090.0 True False 3142907.341820113 3120901.189597777 3444311.3403823897 3129097.417219583 3197350.711644099 3400532.5605782736 3338818.516275625 3240349.2361354902 3028767.2283247146 3479862.133839148 0.9031700742559905 0.8968462167651026 0.9897838500235246 0.8992015478979378 0.9188153405711597 0.9772032424820939 0.9594686191179888 0.9311717279329639 0.87036989163224 1.0 21.730598719430784 AGAPGALSPS(ph)YDGGLHGLQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;P15923-2;X6REB3;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 AGAPGALS(0.382)PS(0.618)YDGGLHGLQSK 374.17 9.836399999999996e-113 1605000000.0 1531500.0 1618900.0 1580600.0 1432500.0 1366300.0 1961200.0 1899300.0 1520400.0 2021500.0 1980900.0 True False 1523254.5741656441 1672784.1078542848 1803134.741178513 1613854.353122466 1540290.2063054307 1825626.8601682184 1807423.602969409 1633859.968434766 1523328.4117122078 1854477.2660661854 0.8213929618004171 0.9020245966145933 0.9723142872511008 0.8702475800880852 0.8305791796373838 0.9844428365740142 0.9746269938392994 0.8810353183248213 0.8214327776277204 1.0 20.822581151355116 2.7428107801534956 24.99212771992245 0.9249523636267184 0.8852367970197116 0.1429065087853305 0.06279835492951116 1015.4259613342208 5970993.896365351 0.02034673944646598 0.0208965780876461 553.109069965343 -2.7428107801534956 -0.039715566607006814 AGAPGESLECPAELRPQVPQPPS(ph)PAAVPRPPSNPPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPAR 37 2 O43734-5;O43734-2;O43734 O43734-5 TRAF3IP2 Adapter protein CIKS 1 AGAPGESLECPAELRPQVPQPPS(1)PAAVPRPPSNPPAR;AGAPGESLECPAELRPQVPQPPS(1)PAAVPRPPSNPPAR 176.06 3.0934e-19 494880000.0 67611.0 73990.0 62408.0 70310.0 62681.0 62280.0 64790.0 59924.0 70350.0 74337.0 True False 67246.98988828833 76452.71242210049 71194.50393993974 79211.23879095326 70663.05381060581 57974.730191350456 61655.86017816464 64395.833167906385 53013.185141703616 69592.74901689246 0.966293052627728 1.0985729620127938 1.0230161179961217 1.1382110910969485 1.0153795446915534 0.8330570499130315 0.8859523592493628 0.9253238890200385 0.761763055642989 1.0 16.086649376682015 2.8745727236991714 4.9139687994032855 0.8818290705033289 1.059161956426412 0.5826606501569112 0.07121182030015398 0.1518410215955157 5.444422245009684 0.020700824781553526 0.02211451243937312 749.1567961906611 -2.8745727236991714 0.17733288592308316 AGAPHALAPHPDRFS(ph)HDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGAPHALAPHPDRFSHDR 18 1 C9JPC9;Q9H9J4-2;Q9H9J4 C9JPC9 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 AGAPHALAPHPDRFS(1)HDR;AGAPHALAPHPDRFS(1)HDR 161.68 1.8796e-11 349610000.0 43015.0 53331.0 48877.0 54267.0 50879.0 50445.0 39218.0 28576.0 67335.0 51412.0 True False 42783.41201941581 55106.09009572973 55758.45675350012 61137.19663587917 57358.13906654032 46957.855884757126 37320.87551269117 30708.486225987803 50741.19149277348 48130.84214397235 0.8888980560830219 1.1449226242684996 1.1584766496856944 1.2702291070038063 1.1917127669398893 0.9756292180447101 0.7754045815582106 0.6380209624034922 1.0542344416287766 1.0 15.55467404586706 2.4792062864460953 3.686491359012101 0.8152221770753122 1.139152190065689 0.40914002290486473 0.14427640833918853 0.18620584618225308 5.540303610196429 0.052239229500372866 0.04541715979215926 301.4437518179055 -2.4792062864460953 0.3239300129903767 AGAPVGGS(ph)PGLAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGAPVGGSPGLAK 13 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK 197.19 1.4248e-07 790640000.0 1446250.0 1307110.0 1142780.0 1088250.0 1094310.0 1547960.0 1515870.0 1370910.0 2118340.0 1619300.0 True False 1438463.5506934794 1350616.3661853191 1303673.4907781745 1226022.3384192134 1233663.8920164646 1440953.1687058888 1442541.576914254 1473214.2655399267 1596303.491301727 1515954.8876475233 0.9488828212597434 0.8909344052323493 0.8599685263729915 0.8087459253631019 0.8137866779999494 0.9505250983701612 0.9515728922203003 0.9718061385230784 1.0530019753944588 1.0 20.531795391213404 2.191995944038828 1.4522778679179906 1.0078886247859635 0.8650076132931874 0.6549870995713472 0.044501885518935545 0.27729429935714595 1.133897667496992 0.02891732768124988 0.016342529485837812 155.59511002053435 -2.191995944038828 -0.1428810114927761 AGASCVCCSQPQQSSTS(ph)PPPSDALQWVVVEVSGTPNQLETHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGASCVCCSQPQQSSTSPPPSDALQWVVVEVSGTPNQLETHR 42 0 Q13952-3;Q13952 Q13952-3 NFYC Nuclear transcription factor Y subunit gamma 1 AGASCVCCSQPQQS(0.001)S(0.009)T(0.188)S(0.793)PPPS(0.009)DALQWVVVEVSGTPNQLETHR 108.51 9.1268e-06 36076000.0 15740.0 17526.0 14656.0 18243.0 12845.0 15824.0 21433.0 20458.0 15027.0 20214.0 True False 15655.2575888784 18109.34231530928 16719.437407764333 20552.56192950308 14480.734611720156 14730.124125689292 20396.20390798893 21984.67984361908 11323.797201483723 18923.92521392392 0.8272732750687215 0.9569548658956185 0.8835078990622114 1.0860623098626936 0.7652077699538499 0.778386299838635 1.0777998579798724 1.161739945338777 0.5983852225938757 1.0 14.207923744089436 2.228183696645525 24.959119230889875 0.9969303222629153 0.8901777228070724 0.02955999594726877 0.16355304590145642 547.018880323591 1315709.0177368044 0.061253089851095455 0.04573483035201679 169.11561007830952 -2.228183696645525 -0.10675259945584292 AGCDEIWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGCDEIWEK 9 0 Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7;Q6IN85-2;Q6IN85;G3V5Z3;G3V231;H0YIY8;Q6IN85-5;G3V4R3 Q5MIZ7-3;Q6IN85-2 SMEK2;SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3B;Serine/threonine-protein phosphatase 4 regulatory subunit 3A 0 98.233 0.011357 0.0 102630.0 100470.0 96197.0 108490.0 86830.0 127540.0 124720.0 112880.0 110440.0 110760.0 False True 102077.45148326489 103814.08321460235 109740.70144068688 122224.82287626984 97887.28581826869 118723.45999686647 118686.81712333238 121303.67879302586 83223.54182018123 103691.20197359315 0.9844369583955711 1.0011850691155117 1.058341492353752 1.1787386060718692 0.9440269179558499 1.1449713933020234 1.1446180087058702 1.1698550743381106 0.8026094811918143 1.0 16.661933963500815 4.2256713478230035 4.159038286634004 1.075311847629211 0.9899570838385544 0.02608439456887135 0.11255839500419972 0.5217626575471945 20.41928173269584 0.02755261940633261 0.07246166718725515 16814.01179828811 -4.2256713478230035 -0.08535476379065654 AGCECLNESDEHGFDNCLR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGCECLNESDEHGFDNCLR 19 0 O43396;K7ER96;K7EML9 O43396 TXNL1 Thioredoxin-like protein 1 0 ;;; 303.86 3.554699999999999e-50 6044300000.0 1575560.0 1777230.0 1631190.0 1757110.0 1520270.0 1775530.0 1752290.0 1520280.0 1924490.0 1746940.0 False True 1567077.3600211726 1836384.0261917762 1860847.3734423504 1979559.9458394542 1713867.3731537417 1652791.790248049 1667525.0383021454 1633731.0134254172 1450225.2263448073 1635448.7935694216 0.9581940848181335 1.1228624420479756 1.137820628049741 1.2104077814133198 1.0479492723298105 1.010604426593373 1.0196131146746064 0.9989496582523655 0.8867445022107004 1.0 20.641255158203762 2.8568658407170955 2.957455841222147 0.9859019638078952 1.1115900400813237 0.41584818744463037 0.0684790226117659 0.2684225251834076 4.512648416675565 0.022693187339652043 0.02428663050807534 719.2267650669362 -2.8568658407170955 0.12568807627342848 AGDEKPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGDEKPEK 8 1 Q8WW12;Q8WW12-2;G5E9V9;A0A0B4J1Z9 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 ; 81.33800000000002 0.021086 1506640000.0 2048520.0 1827640.0 1281480.0 1281630.0 1655900.0 1601810.0 2360570.0 2478420.0 4024600.0 2696400.0 False True 2037490.9959319665 1888471.8925682898 1461901.2451761637 1443884.2265915142 1866769.049711747 1491080.6449551547 2246380.2108468907 2663372.2855617558 3032791.2568770493 2524313.4434958166 0.8071465931387387 0.7481130750359685 0.5791282572070914 0.5719908636195111 0.7395155520490896 0.5906875981653924 0.8898974953506457 1.0550877873047977 1.2014321219464184 1.0 21.26745962992231 1.9357961552932321 2.4661875835889013 1.0995188043544784 0.6704194868776239 0.8104230644067436 0.08943676493586412 0.11793811591553807 1.310342044076256 0.0500658829397003 0.026128414303564003 86.2573586758859 -1.9357961552932321 -0.4290993174768545 AGDKDDITEPAVCALR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGDKDDITEPAVCALR 16 1 P14923 P14923 JUP Junction plakoglobin 0 ;;; 183.23 1.8391e-09 4244010000.0 1826980.0 1873680.0 1761050.0 1569420.0 1782960.0 2587800.0 2332100.0 2072730.0 3096370.0 2183240.0 False True 1817143.7426765624 1936044.3061365231 2008990.5326789997 1768108.4110837406 2010009.3875681257 2408911.4770259573 2219287.413512856 2227407.6377096735 2333311.1027322942 2043903.7540341981 0.8890554357512855 0.9472287050284118 0.9829183633102646 0.8650644178298021 0.9834168480785004 1.1785836159218934 1.085808179143705 1.089781078640949 1.1415953897667013 1.0 20.96289583172164 2.9394789431221007 5.729196297327665 1.1014185697631904 0.9267138660027265 0.724875474424777 0.05207362917492669 0.1067005270606074 7.233217038622114 0.015055036844842258 0.016217775918583893 869.9192537874944 -2.9394789431221007 -0.17470470376046388 AGDLLEDS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 11 AGDLLEDSPK 10 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK 180.2 2.1224e-06 167512820000.0 51628220.0 37274910.0 31300390.0 29177490.0 31119840.0 43135060.0 42894740.0 43714950.0 64905950.0 39227730.0 True False 51350259.399954446 38515582.84619106 35707212.844132975 32871357.24236454 35082767.16225718 40153234.83120925 40819757.552380435 46977181.549018234 48910748.31767105 36724182.68685072 1.3982682701973561 1.0487798509939819 0.9723078971861809 0.8950875101199814 0.9553042326744209 1.0933731370851263 1.1115225599560083 1.279189300129439 1.331840349851647 1.0 25.130227047525473 2.0119690887797117 2.8714473066837676 1.2305171035474103 1.043384457025308 0.13655881170969497 0.15158467116700317 0.41158746688626463 6.566384808359244 0.07522695103918674 0.04413034837640962 102.79431309352739 -2.0119690887797117 -0.18713264652210237 AGDLLEDS(ph)PKRPK ddPTM_BT-474_Trastuzumab_2h_R1 15 AGDLLEDSPKRPK 13 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK 185.02 4.6996e-06 148973160000.0 43389464.8 35132701.7 31720489.0 33158275.0 31471870.9 45662860.8 50237599.3 45181578.3 86992680.6 46326658.9 True False 43155860.74253957 36302072.43791787 36186458.131767035 37356109.21520546 35479627.11072153 42506294.7117083 47807414.6955929 48553257.100151904 65554500.108328186 43370051.86675385 0.9950613127032373 0.8370308744257217 0.8343651108129402 0.8613342066081666 0.8180674355595854 0.9800840183982423 1.1023139848315608 1.119511160588935 1.5115153726292925 1.0 25.37019583274951 2.1145742272516403 1.5010756023184593 1.2348389905035906 0.8653994787032111 0.5767329160009464 0.12893996198577706 0.26878413419951636 1.1536504123443856 0.07638407056009139 0.04046989348179938 130.18898084929336 -2.1145742272516403 -0.3694395118003795 AGDPGEMPQS(ph)PTGLGQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGDPGEMPQSPTGLGQPK 18 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9;H0YHL2 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 AGDPGEMPQS(0.985)PT(0.015)GLGQPK;AGDPGEMPQS(0.999)PT(0.001)GLGQPK 193.19 1.4293e-14 627390000.0 649070.0 597550.0 604960.0 574580.0 564260.0 676240.0 655870.0 646280.0 845250.0 708140.0 True False 645575.4792384558 617439.0905233975 690133.1095934166 647321.7690869846 636115.1663689538 629493.1204977334 624143.0624332896 694508.6953433441 636949.463269722 662945.8989308436 0.9737981338742698 0.9313566786055446 1.041009697331892 0.9764322701610243 0.9595280209061393 0.9495392029921889 0.9414690752893521 1.0476099127597034 0.9607864899638915 1.0 19.338531615470206 1.751871296907153 24.999999999999893 1.0067328024960231 0.9683562229249081 0.17879340459061444 0.03424120438913261 6.4589056269821885 12149.089189926206 0.015734066212187557 0.00872560076612341 56.476958064464526 -1.751871296907153 -0.038376579571115066 AGDRNS(ph)EDDGVVMTFSSVK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGDRNSEDDGVVMTFSSVK 19 1 Q9NY61 Q9NY61 AATF Protein AATF 1 AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK 254.46 4.0305999999999995e-31 4999660000.0 3851260.0 3162750.0 2936430.0 2469650.0 2913850.0 3894890.0 3532650.0 3505800.0 4735020.0 3734950.0 True False 3830525.244075211 3268020.221827249 3349853.8200928913 2782307.4367810786 3284911.5257579465 3625645.42188486 3361762.2234664857 3767420.5980916824 3568137.767017333 3496582.293348433 1.095505531604973 0.9346327206552585 0.95803660233175 0.7957219946099586 0.9394635247129322 1.036911222933876 0.9614423289454916 1.0774580095707933 1.0204644042855848 1.0 21.737514029269313 2.7458300376856175 22.478779992656104 1.0235909099515483 0.9365817825365498 0.20259265809406157 0.07285499223697621 208.6224981510721 645108.4442244859 0.022951271435074302 0.023827234974770434 556.9677354523013 -2.7458300376856175 -0.08700912741499855 AGDRNSEDDGVVMT(ph)FSSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGDRNSEDDGVVMTFSSVK 19 1 Q9NY61 Q9NY61 AATF Protein AATF 1 AGDRNS(0.296)EDDGVVMT(0.704)FSSVK 316.66 6.424099999999998e-61 123960000.0 209590.0 197930.0 157830.0 148280.0 159920.0 238050.0 213300.0 214300.0 278360.0 235550.0 True False 208461.5907276381 204517.98039878823 180051.09211704752 167052.23279650914 180284.86407989802 221594.16380942488 202981.86411487163 230292.15419335075 209761.90783290175 220516.99733549936 0.9453311683293062 0.9274476927854687 0.8164953010089915 0.7575481020283994 0.8175554095977858 1.0048847321836452 0.9204817160014681 1.0443283600627813 0.9512278435106997 1.0 17.75053033668917 2.735083933807478 24.96846409097153 0.9863506389593836 0.8497013381479092 0.5494808083474647 0.059398101136252004 242.63166431007915 1742498.5353152954 0.020558001039031094 0.02010139772688564 543.3553327693836 -2.735083933807478 -0.13664930081147442 AGDSAVLVLPPS(ph)PGPR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGDSAVLVLPPSPGPR 16 0 Q96JY6;Q96JY6-5;Q96JY6-3;A0A087WVI1;Q96JY6-4;C9JS55;C9JSR2 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 1 AGDSAVLVLPPS(1)PGPR;AGDSAVLVLPPS(1)PGPR;AGDSAVLVLPPS(1)PGPR;AGDSAVLVLPPS(1)PGPR;AGDSAVLVLPPS(1)PGPR;AGDSAVLVLPPS(1)PGPR 233.49 1.2419e-19 1881670000.0 1899750.0 2133500.0 1876250.0 1939550.0 1706270.0 2222220.0 1970420.0 1672220.0 2061060.0 1929690.0 True False 1889521.9570820674 2204512.2577720145 2140409.691342645 2185096.831133456 1923553.3706453682 2068603.1619432047 1875103.2568646285 1797009.5477611064 1553139.3797890516 1806535.532109274 1.045936779818496 1.2202983105447536 1.1848146096764265 1.2095509843541141 1.0647747229192146 1.1450664131294146 1.0379553701195658 0.9947269321976494 0.8597336460776045 1.0 20.78479420023276 1.978477676662192 1.3088607815137907 0.9318246408484165 1.157325303785593 0.6578560013387417 0.06324221133372213 0.2499003540442219 0.7940411616156842 0.04426674504588844 0.020369889739328184 95.165093068 -1.978477676662192 0.22550066293717652 AGDTETLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGDTETLK 8 0 C9JNG9;P12111 C9JNG9 COL6A3 Collagen alpha-3(VI) chain 0 ; 75.311 0.090077 2085120000.0 1253650.0 1182530.0 1094430.0 1087670.0 988860.0 1050690.0 1439360.0 1045970.0 1643400.0 1413050.0 False True 1246900.4876936076 1221889.796195519 1248516.231043908 1225368.910478681 1114785.4595675836 978058.2733582214 1369732.6579108352 1124025.5927280395 1238406.0904317803 1322867.9392270301 0.9425736694640802 0.9236672535200194 0.9437950637562758 0.9262972320537762 0.8427035129591001 0.7393468723187246 1.03542660404272 0.8496884378230702 0.9361524712401738 1.0 20.33523761511927 -0.6959345021062796 6.307962600223292 1.0000000005245444 0.9020034524099838 0.12709396457543987 0.07492021676042242 1.0451726021520754e-09 8.284548663327266e-11 0.07014034496917712 0.016532237607806765 0.20140279715275503 0.6959345021062796 -0.0979965481145606 AGDWQCPNPGCGNQNFAWR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGDWQCPNPGCGNQNFAWR 19 0 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A0A0D9SFL3;C9JGE3;Q01844-2 B0QYK0 EWSR1 RNA-binding protein EWS 0 ;;;;; 270.79 2.4779999999999997e-33 2412630000.0 744183.0 951845.0 1075970.0 1073180.0 954503.0 862606.0 896937.0 794640.0 840387.0 886913.0 False True 740176.4014145036 983526.5854225465 1227457.2235011037 1209044.4779643754 1076053.2992674764 802976.0775761086 853548.7306779205 853940.0719001591 633284.8844588614 830309.4530155776 0.8914464344905115 1.1845301554143504 1.4783129579497574 1.456137195082244 1.2959665765087807 0.9670804959040299 1.0279886945498944 1.0284600142739049 0.7627094719430831 1.0 19.663289597795462 2.737127287565813 24.485086552948058 0.9706582693140531 1.2798978024533905 0.4480594672532495 0.16775601933665843 96.21202585321417 1643541.0887088738 0.056362806188282044 0.05584325325544198 545.9178409523628 -2.737127287565813 0.3092395331393374 AGEAGKLEEVMQELR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGEAGKLEEVMQELR 15 1 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ;;;;; 209.33 2.2247e-09 2384159000.0 2881550.0 2975735.0 2745091.0 2804066.0 2561105.0 3267389.0 3551273.0 2936513.0 4459770.0 3318573.0 False True 2866036.054970301 3074780.5406052065 3131575.9520412986 3159060.4680926325 2887246.5408913605 3041522.089036393 3379484.3578097094 3155650.511370876 3360719.441356302 3106778.829966717 0.92251048813829 0.9897004933042327 1.0079816180783128 1.0168282459058973 0.9293376512811797 0.9789953696410945 1.087777580178089 1.015730659978999 1.081737589087507 1.0 21.56698810970007 2.3006378175839397 10.993427454413357 1.0456093171834682 0.9762832120481382 0.4708226859145914 0.037399286098651736 0.47722568549292227 82.43234291559911 0.012697479280515987 0.010615276032911253 199.81947684040557 -2.3006378175839397 -0.06932610513533 AGELTEDEVER ddPTM_BT-474_Trastuzumab_2h_R1 4 AGELTEDEVER 11 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 ;;; 275.01 9.0146e-27 4469270000.0 1456800.0 1542510.0 1450450.0 1463050.0 1372480.0 1549410.0 1554920.0 1376710.0 1771450.0 1634960.0 False True 1448956.7506656975 1593851.512883013 1654660.7524625927 1648271.9799901058 1547257.192673702 1442302.9336188224 1479702.5792287674 1479447.0909917308 1334899.883713873 1530615.453040321 0.946649759603288 1.0413141391700207 1.081042759091368 1.0768687698246344 1.0108725804383623 0.9423026082442327 0.9667369921619285 0.9665700735302571 0.8721327627147039 1.0 20.54568043957078 2.880604482207456 3.9063436503983717 0.9506898426443005 1.040430333446588 0.44742535534718975 0.04590704130159679 0.2186845331417188 5.8272668010193795 0.014521251176641206 0.015618575921328431 759.6341528430065 -2.880604482207456 0.08974049080228763 AGEPNS(ph)PDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_BT-474_Trastuzumab_2h_R1 8 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 2 AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(0.999)PDVT(0.001)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR 259.57 1.5586e-58 15140640000.0 1658229.0 1777275.0 1444818.0 1588002.0 1502895.0 1825212.0 1750757.0 1628258.0 2091600.0 1795163.0 True False 1649301.2793105626 1836430.5239895745 1648235.815816816 1789042.8903784854 1694279.769893434 1699039.390526899 1666066.1953687773 1749766.8800865929 1576153.2060040827 1680594.1604236304 0.9813798703756178 1.092726945764623 0.9807458901328934 1.064529993325407 1.0081433160914672 1.0109754219892202 0.9913554590412292 1.041159681077034 0.9378547439476875 1.0 20.68053994563304 1.9696724724367087 0.7212960219627197 0.9861513814341204 1.0298301617835335 0.13657378535254716 0.039545597609969785 1.3660996738943694 1.3584191610374925 0.03255275984798188 0.017570592821497498 93.25507429853371 -1.9696724724367087 0.04367878034941308 AGEPNS(ph)PDAEEANSPDVTAGCDPAGVHPPR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR 275.4 1.5822999999999996e-71 6488460000.0 531325.0 569272.0 543949.0 554864.0 536381.0 618633.0 594669.0 556270.0 722995.0 609386.0 True False 528464.4052357575 588219.8743878085 620532.2911105359 625109.7255085119 604685.9409707335 575868.3568154414 565902.5886138142 597781.6920818258 544822.5698866526 570494.4637583974 0.9263269651282023 1.0310702587938132 1.0877095756941988 1.0957332020197201 1.0599330569960028 1.009419711142578 0.9919510609895632 1.0478308380832675 0.9550006257683568 1.0 19.121853360692995 2.686770828865201 8.494766923683333 1.0065912030658488 1.0453602168805085 0.13147088379528604 0.048521915086258985 0.8431380318328797 130.75370599573148 0.01644659621097152 0.01553112773450306 486.1506031086338 -2.686770828865201 0.03876901381465969 AGEPNSPDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 AGEPNS(0.062)PDAEEANS(0.938)PDVTAGCDPAGVHPPR;AGEPNS(0.218)PDAEEANS(0.782)PDVTAGCDPAGVHPPR;AGEPNS(0.097)PDAEEANS(0.903)PDVTAGCDPAGVHPPR 185.7 2.9932e-18 11377170000.0 333245.0 353442.0 349863.0 345016.0 315640.0 399520.0 354430.0 304168.0 419900.0 381790.0 True False 331450.845947 365206.1033097994 399120.66933628917 388694.99022471276 355834.8830551459 371902.12276892026 337284.86684591585 326866.56069380813 316421.2713717322 357423.8353331362 0.9273327998343253 1.021773220494402 1.1166593547525714 1.0874904015912379 0.9955544311237405 1.0405073361218051 0.9436552168703303 0.9145068917666132 0.8852830731806466 1.0 18.447276320260844 2.1830236255574773 4.232801297933384 0.9250147728322959 1.0362822994370695 0.41692684112562706 0.05499501184926713 0.19540852672843065 7.169765555861072 0.02207171193085693 0.016230048918775334 152.4135664303476 -2.1830236255574773 0.11126752660477357 AGEVFIHK ddPTM_BT-474_Trastuzumab_2h_R1 6 AGEVFIHK 8 0 Q15233;Q15233-2;H7C367;C9JYS8;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;;;; 111.04 0.0033105 15478420000.0 23056700.0 23181700.0 21953900.0 20716200.0 20304900.0 24602000.0 24565900.0 23207800.0 30759900.0 25226000.0 False True 22932565.289040163 23953288.870866407 25044818.29328041 23338868.795920156 22890608.6584287 22901321.646878675 23377553.56614869 24939683.882820554 23179534.806542873 23616055.082934827 0.9710582571265868 1.014279852699669 1.0604996560741435 0.9882628031633036 0.9692816424267937 0.9697352740097297 0.9899008739627103 1.0560478367465442 0.9815159528185812 1.0 24.49326465572012 AGEVS(ph)PPIFQEDAALDLSVAAHR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGEVSPPIFQEDAALDLSVAAHR 23 0 Q9Y5P3-2;Q9Y5P3 Q9Y5P3-2 RAI2 Retinoic acid-induced protein 2 1 AGEVS(1)PPIFQEDAALDLSVAAHR;AGEVS(1)PPIFQEDAALDLSVAAHR;AGEVS(0.999)PPIFQEDAALDLS(0.001)VAAHR;AGEVS(1)PPIFQEDAALDLSVAAHR;AGEVS(1)PPIFQEDAALDLSVAAHR;AGEVS(1)PPIFQEDAALDLSVAAHR 222.13 1.0741e-32 318901000.0 273390.3 327473.0 287065.0 298893.0 307782.0 331777.0 301751.0 305654.0 349681.0 293843.0 True False 271918.3970013178 338372.74084339093 327481.25678629056 336732.8231538105 346976.2133331609 308842.0369090508 287154.15132923884 328463.4535595632 263506.80303533864 275089.68816835113 0.9884717919157605 1.2300451648929547 1.1904526809666398 1.224083772081397 1.2613203193600488 1.122695797743039 1.0438564718336676 1.1940231411311502 0.9578941500492598 1.0 18.06954253518432 1.2362617861304688 24.99997838478853 0.9789469860431808 1.1609457744242082 0.43130835588299754 0.08161351843062957 55.65043532092993 605136.1357933435 0.06621627174299885 0.019628010011741484 17.229068041451473 -1.2362617861304688 0.18199878838102745 AGFADPDDFTLGAGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGFADPDDFTLGAGPR 16 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 0 ; 161.94 1.92e-08 343480000.0 175727.0 195761.0 173893.0 196606.0 186066.0 199809.0 206205.0 197462.0 236210.0 216427.0 False True 174780.905357105 202276.7865449767 198375.62289494846 221496.29944153278 209760.40220041425 185996.67412979365 196230.07637040326 212197.61713171896 177999.21055183795 202614.44356752315 0.8626280648094943 0.9983334997416711 0.9790793755966264 1.0931910654618118 1.0352687523508641 0.9179832930706567 0.9684900687003972 1.0472975835061933 0.8785119531348615 1.0 17.628377496159793 4.739305600442886 23.791845892560225 0.9956167186048079 0.8626279942204191 0.297251767141152 0.05877104467328131 38.548760400859635 1230615.6298455521 0.013887253929695658 0.08312308904277346 54866.29073066182 -4.739305600442886 -0.1329887243843888 AGFAGDDAPR ddPTM_BT-474_Trastuzumab_2h_R1 11 AGFAGDDAPR 10 0 C9JTX5;F8WCH0;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63267-2;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;Q6S8J3;A5A3E0;P0CG38;P0CG39 C9JTX5;P60709;P63261;P68133;Q6S8J3 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ;;;;;;;;;; 199.7 6.3659e-07 102447390000.0 65146220.0 79674820.0 73016690.0 75545680.0 72487680.0 78804560.0 77824110.0 66335330.0 83929210.0 76617870.0 False True 64795479.989945546 82326748.21925431 83296805.2795532 85109755.34212701 81718556.37985946 73356986.25318056 74059460.48232915 71285609.16858041 63245980.78929527 71728051.94074127 0.9033492230275105 1.1477622212195202 1.161286317218953 1.1865616455391979 1.1392830861679044 1.022709864109861 1.0325034415198393 0.9938316633424481 0.8817468072539663 1.0 26.09603411341809 2.136254131129932 1.344072969087484 0.9532944512882382 1.1140085008316594 0.37237791449440116 0.08117441559781201 0.45530229194102956 1.5637491298503279 0.05363701861004585 0.028273699719951143 136.8529398022264 -2.136254131129932 0.16071404954342117 AGFDSDYDQALADIR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGFDSDYDQALADIR 15 0 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;P52701-4 P52701 MSH6 DNA mismatch repair protein Msh6 0 ;; 275.35 3.8654e-33 371583000.0 377732.0 482071.0 463211.0 463630.0 423694.0 502222.0 494679.0 489208.0 506305.0 502373.0 False True 375698.33288197045 498116.4418169261 528427.0824978118 522325.51046294556 477648.9194689113 467504.5752434231 470749.4869127073 525715.1851078888 381532.9168894133 470311.12503683637 0.7988293554666488 1.059121112174227 1.1235691744617429 1.1105956943332678 1.0156020005512314 0.9940325677110159 1.0009320678430402 1.1178029970409757 0.8112351517509401 1.0 18.843255933457378 1.2418506667591196 24.999999452475446 0.9056175883338948 1.035702435180042 0.19200089163835488 0.09894082806333235 118.65025418273666 901641.3897844885 0.07089832105471264 0.023478580917533593 17.45221950814958 -1.2418506667591196 0.13008484684614707 AGFESER ddPTM_BT-474_Trastuzumab_2h_R1 2 AGFESER 7 0 Q13946-3;Q13946-2;Q13946;E5RG23 Q13946-3 PDE7A High affinity cAMP-specific 3,5-cyclic phosphodiesterase 7A 0 ; 101.33 0.021262 997110000.0 988160.0 1217550.0 975160.0 1162610.0 1370740.0 1297760.0 1133020.0 1124870.0 1016150.0 1122830.0 False True 982839.8563548962 1258075.4157254836 1112454.051757332 1309796.3067949114 1545295.6139874905 1208048.9057984408 1078211.4940432813 1208813.5113741213 765733.4482123964 1051170.0280968735 0.9349960806381742 1.1968334161916783 1.0583007715425563 1.2460365799872324 1.4700719890056448 1.149242152561745 1.0257251112794434 1.1499695378136483 0.7284582205970469 1.0 20.003564615267855 1.2580070200196896 23.983174477436393 0.8642293139129272 1.1586736678933536 0.3777233721497961 0.14861738357118745 132.29063884050072 163155.17395180938 0.10114059029273634 0.036793347119589176 18.11369371706522 -1.2580070200196896 0.29444435398042634 AGFIQDTSLILYEEVKPNLTER ddPTM_BT-474_Trastuzumab_2h_R1 1 AGFIQDTSLILYEEVKPNLTER 22 1 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 160.57 1.6737000000000002e-11 286350000.0 127330.0 128890.0 116250.0 114050.0 124390.0 130820.0 160380.0 128770.0 189410.0 153760.0 False True 126644.46942769292 133180.02573434956 132616.98953688628 128488.71830619016 140230.32918270686 121776.72131715596 152621.80668890348 138379.47128081063 142732.44346396724 143946.90515944094 0.8797998768185867 0.9252024250666203 0.9212910092786974 0.8926118846658863 0.9741809247470972 0.8459836019556762 1.0602645921414837 0.9613230039752253 0.991563127431406 1.0 17.135177245907634 2.2376510223349255 24.99999981307017 0.9980637059529189 0.9104770675759092 0.5963502390241144 0.03882844461065875 17.420603980063795 478781.20987555693 0.01313051598156537 0.010264119660132416 172.84269222650812 -2.2376510223349255 -0.08758663837700975 AGFNYES(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGFNYESPSK 10 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97;H0YC29;E7EVN4;F8W8T0 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 AGFNYES(0.89)PS(0.11)K;AGFNYES(0.739)PS(0.261)K;AGFNYES(0.975)PS(0.025)K;AGFNYES(0.818)PS(0.182)K 186.76 1.3681e-06 1217480000.0 1738600.0 1257840.0 1064689.0 937971.0 957660.0 1689380.0 1610430.0 1363560.0 2271450.0 1845350.0 True False 1729239.5707766183 1299706.4440196645 1214587.9567573145 1056718.0324276662 1079612.3245044712 1572597.1369727605 1532527.3484599742 1465315.7712173816 1711681.5833706125 1727578.1831163783 1.0009616859465331 0.7523285815494174 0.7030581704651533 0.6116759535139837 0.6249282000985672 0.9102899957534498 0.8870957988688235 0.8481907131832949 0.9907983326594864 1.0 20.72031957188673 2.7138310324220574 23.396585855697133 0.9089025565675647 0.7303289254340987 0.4226171557692239 0.10900764634611797 374.1088321770415 353942.19047363877 0.03680417782432795 0.03471933704789367 517.4054898540901 -2.7138310324220574 -0.17857363113346603 AGFNYES(ph)PSKGGNFPSFPHDEVTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGFNYESPSKGGNFPSFPHDEVTDR 25 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 AGFNYES(0.967)PS(0.033)KGGNFPSFPHDEVTDR 174.46 1.8741e-12 354760000.0 187740.0 146970.0 141460.0 146080.0 145660.0 232650.0 230610.0 175300.0 327790.0 251760.0 True False 186729.22869987504 151861.807604759 161376.33840763808 164573.71302208028 164208.93760553977 216567.45309919203 219454.5132842498 188381.77615536348 247010.54666096676 235692.46125741987 0.7922579606648178 0.6443218709439236 0.6846902847324641 0.6982561603543834 0.6967084849871086 0.9188560887514353 0.9311053570125215 0.7992694172327203 1.0480205660510518 1.0 17.84654608843231 2.738716773963977 24.999991780908914 0.9159214417480948 0.6986651394407337 0.7309669647517163 0.0709072216466599 7.899929107983473 1264802.7642299237 0.02200314443896606 0.022035165612861677 547.9195215414229 -2.738716773963977 -0.21725630230736104 AGGAAVVITEPEHTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGGAAVVITEPEHTK 15 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;; 214.88 2.4153e-12 3012110000.0 3554980.0 3657740.0 3294770.0 3249560.0 3326370.0 3811010.0 3721930.0 3588690.0 5091000.0 3993440.0 False True 3535840.382675409 3779485.664749477 3758644.9773457786 3660953.962815106 3749963.502560341 3547563.848852579 3541886.0267466637 3856496.2707985807 3836391.2659049467 3738575.240244005 0.9457721606385634 1.0109427848515902 1.0053682849246237 0.9792377383251935 1.0030461503606365 0.9489079718564233 0.9473892590471166 1.0315417031828626 1.026163984773664 1.0 21.83405713744352 1.6723105360010857 9.255218330341009 1.0213473071920653 0.9796712117578268 0.38025844547532883 0.024333669327629155 0.12660571106427534 16.999439229207187 0.012090223707668322 0.006450006402953443 47.02302197569563 -1.6723105360010857 -0.04167609543423856 AGGAS(ph)PAASSTAQPPTQHR ddPTM_BT-474_Trastuzumab_2h_R1 9 AGGASPAASSTAQPPTQHR 19 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 AGGAS(1)PAASSTAQPPTQHR;AGGAS(0.989)PAAS(0.005)S(0.005)TAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR 261.3 3.97e-31 21268500000.0 1839831.1 1933994.0 1626600.2 1759392.5 1805147.0 2052858.8 2127202.1 1679349.8 2131457.7 2035318.2 True False 1829925.6537820534 1998365.8211659365 1855611.3694976072 1982131.410105425 2035021.7705054753 1910949.5030658229 2024301.2077218457 1804671.4096414954 1606188.5099049006 1905422.4499524236 0.9603779224012736 1.0487783542257696 0.9738582483605879 1.0402582430761833 1.0680160562589611 1.002900696962785 1.062389711936264 0.9471240404911553 0.842956641948354 1.0 20.861679461470167 1.5750765145755008 5.269104528478224 0.913665530734007 1.0228853983025008 0.43127076879415416 0.048847406181376854 0.1143129319300186 6.750188594636772 0.02545425858328052 0.011627040547475908 37.590362565210455 -1.5750765145755008 0.10921986756849378 AGGDAEPRPAEPPAWAGGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGGDAEPRPAEPPAWAGGAR 20 1 Q96HS1;Q96HS1-2 Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial 0 103.87 0.00025445 463110000.0 75964.0 101190.0 115520.0 128730.0 137470.0 144780.0 130170.0 107380.0 161650.0 127730.0 False True 75555.0182643938 104558.04797935317 131784.21188215984 145027.20480101582 154975.989651473 134771.699375461 123873.17980231038 115393.24086459169 121813.52349902464 119578.16204484513 0.6318462917673762 0.8743908268145232 1.1020759110909992 1.212823498212212 1.29602250947253 1.1270594652969985 1.0359180780505264 0.9650026300062717 1.0186937264794318 1.0 16.867594415927044 4.517569604508972 2.48233629330406 1.0961224436188521 0.6197150904962754 0.6994984650592234 0.09600280093039734 0.22303868709283983 2.3014817556894522 0.028686958000973137 0.18178928570698533 32928.32234271262 -4.517569604508972 -0.47640735312257676 AGGGDLLLPPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGGGDLLLPPSPK 13 0 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 AGGGDLLLPPS(1)PK;AGGGDLLLPPS(1)PK;AGGGDLLLPPS(1)PK;AGGGDLLLPPS(1)PK 163.99 3.9646e-05 2254600000.0 9157900.0 7407770.0 6440100.0 6470400.0 6742570.0 8215900.0 8222400.0 8036900.0 12208500.0 7891300.0 True False 9108594.883938344 7654333.146358472 7346810.101647324 7289551.976574936 7601196.323156551 7647954.171148308 7824651.099381717 8636654.288551278 9199878.760518672 7387670.47791816 1.2329454746478 1.0360956365389293 0.9944691122332854 0.9867186142591902 1.0289030007329947 1.0352321742026989 1.059149988182296 1.1690632810933226 1.2453017210252169 1.0 22.816688086635914 1.7896546074297206 5.257874005922926 1.1550371148874756 1.0454910725319448 0.15760718063097912 0.08611323766975915 0.28389952586800754 15.283749129611733 0.04051964503221134 0.022447053482062235 61.610482140140284 -1.7896546074297206 -0.10954604235553078 AGGGGGLGAGS(ph)PALSGGQGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGGGGGLGAGSPALSGGQGR 20 0 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(0.997)PALS(0.003)GGQGR;AGGGGGLGAGS(1)PALSGGQGR 307.0 8.477999999999996e-56 3673200000.0 1920960.0 2202530.0 2203010.0 2085700.0 2300560.0 2618390.0 2408090.0 1944940.0 2404220.0 2296330.0 True False 1910617.7647987187 2275839.8795924964 2513174.659093812 2349749.4061483624 2593522.6795125664 2437386.862327071 2291601.486902866 2090081.299005202 1811732.1958974635 2149776.253412979 0.8887519162821838 1.0586403473288808 1.1690401059663313 1.0930204491829818 1.2064151678087878 1.1337862991357737 1.0659720904744043 0.9722320151629708 0.8427538414852067 1.0 21.035755082678826 1.6758843962746774 2.9377212577618885 0.91833485732416 1.098288177640745 0.3859346019355834 0.08756099238142404 0.21638295819913958 4.284021423892149 0.05571450884685662 0.02425743512581711 47.41157648121755 -1.6758843962746774 0.17995332031658495 AGGIETIANEFSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGGIETIANEFSDR 14 0 Q92598-2;Q92598;Q92598-3;R4GN69 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ;;; 261.72 1.2642e-13 258350000.0 519820.0 606145.0 504843.0 541603.0 541566.0 556304.0 563834.0 553891.0 653818.0 588811.0 False True 517021.3468774315 626320.1699026092 575920.5062259809 610169.8842681939 610531.2199868312 517848.0138787578 536559.1953649534 595225.159021508 492693.3146123434 551232.5778735403 0.9379368484930922 1.1362176239995287 1.0447867730308644 1.1069191277155874 1.1075746327295168 0.9394365185679548 0.9733807777377896 1.079807658171575 0.8938029688175894 1.0 19.07230162834934 2.7447996289043144 24.98443343803735 0.9899374487589229 1.0715682521923682 0.2950482132143798 0.06748666829589332 696.1542615866834 2787785.3850545427 0.020391217536367513 0.021161220266346207 555.6478380472954 -2.7447996289043144 0.08163080343344531 AGGIETIANEYSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGGIETIANEYSDR 14 0 P34932;A0A087WYC1;A0A087WTS8;P34932-2 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;; 326.24 3.166e-57 1785610000.0 882140.0 966080.0 957280.0 914920.0 914100.0 966870.0 986260.0 915060.0 1151460.0 994240.0 False True 877390.6562549669 998235.3887923072 1092056.703173079 1030748.7781911384 1030505.2167048191 900032.5526671642 938550.8359209237 983346.423780529 867698.1117735044 930786.7519883115 0.9426333737354105 1.072464113460913 1.1732619752486473 1.1073951965789068 1.1071335238748217 0.9669589202301695 1.0083414207561796 1.0564680058885039 0.9322200922176432 1.0 19.828091151255727 2.74501040869042 24.58642411871607 1.0025359696894298 1.086765881923038 0.3259474681479082 0.06201576857921709 552.3957346971483 2105719.981009662 0.01990988426876449 0.020646151013591203 555.9175807292495 -2.74501040869042 0.0842299122336081 AGGLDWPEATEVS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGGLDWPEATEVSPSR 16 0 Q9Y446;Q9Y446-2;E9PK71;E9PKC4;E9PRW6;E9PJR7 Q9Y446 PKP3 Plakophilin-3 1 AGGLDWPEATEVS(0.999)PS(0.001)R;AGGLDWPEATEVS(1)PSR;AGGLDWPEATEVS(0.986)PS(0.014)R;AGGLDWPEATEVS(0.999)PS(0.001)R;AGGLDWPEAT(0.006)EVS(0.944)PS(0.049)R;AGGLDWPEATEVS(0.999)PS(0.001)R 292.38 1.5194e-45 5382360000.0 3626640.0 4056600.0 3509120.0 3768650.0 3635470.0 4247980.0 4179980.0 3822440.0 4733080.0 4499730.0 True False 3607114.57319758 4191621.4787335135 4003173.5941821793 4245760.703591612 4098425.555381107 3954327.141269316 3977778.3983257394 4107689.8827570267 3566675.85402267 4212553.378987328 0.8562774756019135 0.9950310658713014 0.9502962298710427 1.0078829445271662 0.9729076848793174 0.9387007796729478 0.9442677731200578 0.9751069038665784 0.8466779012970221 1.0 22.0062635367136 AGGPATPLS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 AGGPAT(0.001)PLS(0.998)PT(0.001)R;AGGPATPLS(0.973)PT(0.027)R 150.56 0.00032247 167320000.0 227019.0 245500.0 215170.0 225260.0 197947.0 251520.0 240230.0 196207.0 314310.0 262390.0 True False 225796.75492818208 253671.31909211597 245464.06570883264 253777.89290357163 223154.37712621002 234133.01441439427 228609.15713228137 210848.9626589583 236852.51203822112 245644.04555661904 0.919203046084574 1.032678477987559 0.9992673144289796 1.0331123326377467 0.9084461079467716 0.9531393846077513 0.9306521418594238 0.8583516127215031 0.9642102722316078 1.0 17.90620974283552 3.2299185175265492 24.999295818631392 0.9245179565870525 0.9989092380641552 0.26986427259160084 0.046292060537376625 195.65773820602115 565985.1806482709 0.013166499297815451 0.015969909239192535 1697.9250573178406 -3.2299185175265492 0.07439128147710272 AGGPTTPLS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 AGGPT(0.001)T(0.012)PLS(0.861)PT(0.126)R;AGGPT(0.004)T(0.116)PLS(0.88)PT(0.001)R;AGGPTT(0.002)PLS(0.995)PT(0.003)R 117.03 0.00081585 1425740000.0 529060.0 663470.0 622750.0 593180.0 554969.0 593040.0 608370.0 485115.0 791920.0 666840.0 True False 526211.5997440919 685553.1978739159 710427.7869599654 668276.5271798838 625641.0125910256 552044.5406659996 578940.8189009107 521316.7446640562 596761.9271843339 624281.7002895533 0.842907295696839 1.098147194697432 1.137992330434251 1.0704727158747804 1.0021774021260623 0.8842875586613403 0.9273711188913392 0.835066516321494 0.955917700146496 1.0 19.25183765080553 2.8976117770160275 3.7279668496105365 0.9050703354858056 1.0481803592864245 0.29215775912647945 0.08417531293152661 0.2521715966954476 6.369000031614404 0.026380707593896713 0.028579231549516467 789.9721431793716 -2.8976117770160275 0.14311002380061888 AGGS(ph)PAS(ph)YHGSTSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGGSPASYHGSTSPR 15 0 I3L2B2;O95208-3;O95208-2;F6PQP6 I3L2B2 EPN2 Epsin-2 2 AGGS(1)PAS(0.937)Y(0.014)HGS(0.004)T(0.033)S(0.013)PR;AGGS(0.999)PAS(0.943)Y(0.057)HGS(0.001)TSPR 211.57 1.9194e-09 457950000.0 476060.0 492030.0 443720.0 604560.0 481260.0 648650.0 554830.0 499800.0 634740.0 634730.0 True False 473496.94585523877 508406.9211115837 506191.91911662003 681097.2340130674 542545.6083484975 603810.3522578592 527990.7532435732 537097.6139329751 478316.83208024135 594220.9879803066 0.7968364555156561 0.8555856009724669 0.8518580281674534 1.146201914422518 0.9130367646429856 1.0161377071350943 0.8885427541665217 0.9038684677875688 0.8049477244248624 1.0 19.18064003672957 3.9715820348938142 24.929862105980344 0.947783060699695 0.8330886034249575 0.28139111326501676 0.08696923872645793 891.5754801027063 782143.1681439391 0.02256616244329907 0.04079155903978342 9366.601310937986 -3.9715820348938142 -0.11469445727473748 AGGS(ph)PASYHGSTSPR ddPTM_BT-474_Trastuzumab_2h_R1 5 AGGSPASYHGSTSPR 15 0 I3L2B2;O95208-3;O95208-2;F6PQP6 I3L2B2 EPN2 Epsin-2 1 AGGS(0.985)PAS(0.015)YHGSTSPR;AGGS(0.763)PAS(0.237)YHGSTSPR;AGGS(0.984)PAS(0.016)YHGSTSPR;AGGS(0.994)PAS(0.006)YHGSTSPR;AGGS(0.795)PAS(0.205)YHGSTSPR 166.96 8.617100000000002e-07 3115017000.0 622523.0 1818931.0 2133982.0 2006892.0 2158199.0 2166612.0 2306340.0 1768074.0 1329027.0 1940049.0 True False 619171.4053368076 1879473.018767993 2434428.116695945 2260964.3214287255 2433032.8500023223 2016839.212096053 2194773.5231256094 1900016.6599778535 1001506.1038994015 1816233.4118604872 0.34090959966568923 1.0348190967606554 1.340371838112041 1.244864402705086 1.3396036181880429 1.1104515526063756 1.2084204093995599 1.046130220692032 0.5514192709809765 1.0 20.792518190727563 -1.7960605385262556 8.47773641162162 0.9988857148735706 1.0596954639314724 0.0 0.3149462309867191 0.006682282581119932 0.00016074818781165555 0.3072082353454846 0.07111581962268801 0.01599335073590126 1.7960605385262556 0.06080974905790182 AGGSAALS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 6 AGGSAALSPSK 11 0 Q92522 Q92522 H1FX Histone H1x 1 AGGSAALS(0.706)PS(0.294)K;AGGSAALS(0.899)PS(0.101)K;AGGSAALS(0.98)PS(0.019)K;AGGSAALS(0.995)PS(0.005)K;AGGSAALS(0.929)PS(0.071)K;AGGSAALS(0.984)PS(0.016)K 215.02 1.3764e-11 8463650000.0 8247180.0 6451820.0 7529450.0 5005650.0 2855020.0 6020880.0 7880560.0 4921890.0 13290310.0 6992150.0 True False 8202778.099227831 6666564.928492451 8589531.112847386 5639364.776759144 3218589.8739706744 5604670.737227004 7499347.206137329 5289186.424651011 10015091.18153 6545905.000719204 1.2531159707216322 1.0184328870889496 1.312199170611802 0.8615103299145866 0.4916951702808161 0.8562102164041816 1.1456547574878295 0.8080145410099725 1.529978082546208 1.0 22.642161234342687 3.7287807478725115 24.766078730285166 0.9294466572561086 1.1769676999917387 0.14336798003823092 0.2603713084801936 1087.5309367322802 2754013.280723925 0.06948974020067306 0.10919335816056763 5355.262306172508 -3.7287807478725115 0.24752104273563003 AGGSAALS(ph)PSKK ddPTM_BT-474_Trastuzumab_2h_R1 5 AGGSAALSPSKK 12 1 Q92522 Q92522 H1FX Histone H1x 1 AGGS(0.005)AALS(0.974)PS(0.02)KK;AGGSAALS(0.999)PS(0.001)KK;AGGSAALS(0.998)PS(0.002)KK;AGGSAALS(0.998)PS(0.002)KK;AGGSAALS(1)PSKK 138.01 5.022100000000001e-05 5770680000.0 8183160.0 5043520.0 5262990.0 4158000.0 3455050.0 7188590.0 7418440.0 6120800.0 11470850.0 7458080.0 True False 8139102.775794555 5211390.514327778 6003973.24527085 4684402.373670656 3895030.1378142294 6691659.693420688 7059581.716007165 6577565.176792633 8644012.719015075 6982098.949216468 1.1657100300344392 0.7463931050293409 0.859909504139098 0.6709160680394454 0.557859486974376 0.9584023002383296 1.0110973458489 0.9420612948389635 1.2380249523655213 1.0 22.735229372008646 2.494504232267472 23.118361405675355 1.0252346125406278 0.789792220534567 0.33540318469504926 0.16403433366416495 334.24701023345256 444530.21224133205 0.054071390085476234 0.04985029199602908 312.2512835449666 -2.494504232267472 -0.23544239200606076 AGGSPAS(ph)YHGSTSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGGSPASYHGSTSPR 15 0 I3L2B2;O95208-3;O95208-2;F6PQP6 I3L2B2 EPN2 Epsin-2 1 AGGS(0.372)PAS(0.627)YHGSTSPR 179.56 6.9804e-07 75767000.0 48003.0 114310.0 130750.0 124090.0 133620.0 129780.0 130720.0 117160.0 91172.0 128480.0 True False 47744.5571816347 118114.73924814574 149158.4635006269 139799.78127676563 150635.71497221087 120808.6140692591 124396.57420110647 125903.07412642543 68703.88224220894 120280.29640273802 0.39694412642425 0.9819957447781698 1.2400905880809878 1.1622833120453075 1.2523723292785456 1.0043923874676206 1.0342223782404543 1.0467472885572255 0.5711981454731848 1.0 16.8760408026512 -0.43074074161206743 5.771509452086242 0.9999798451687333 0.9966687516039927 0.0 0.2639989852834375 0.0 0.0 0.25137314635409286 0.05924921882291702 0.37090207107631207 0.43074074161206743 -0.003311093564740575 AGHCAVAINTR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGHCAVAINTR 11 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 ;;; 116.55 0.00097438 1050220000.0 421579.0 506688.0 433482.0 398855.0 385521.0 412952.0 447234.0 355172.0 525445.0 458589.0 False True 419309.26550583047 523552.8037806355 494512.49770691193 449350.0021044756 434614.8141880085 384405.6002244469 425599.5828202086 381676.73816687235 395956.1203522738 429321.4574022044 0.9766790321710053 1.2194890209975033 1.151846685463089 1.046651627485527 1.0123295882247159 0.8953794262939002 0.9913307976626266 0.8890232053072141 0.9222835558888157 1.0 18.711698754639595 3.2290383378796386 1.8932802393497397 0.9339863047640108 1.1235771665436776 0.5558292228693859 0.0674341190732508 0.21602884203205477 1.5959792221348545 0.02074325087577213 0.02876060855059956 1694.4873768028785 -3.2290383378796386 0.18959086177966677 AGHDDVPPLS(ph)PLLPPMQNNQIQR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGHDDVPPLSPLLPPMQNNQIQR 23 0 O14544 O14544 SOCS6 Suppressor of cytokine signaling 6 1 AGHDDVPPLS(1)PLLPPMQNNQIQR 73.435 0.012636 143010000.0 79839.0 75202.0 77182.0 79365.0 70549.0 80907.0 78358.0 66201.0 71599.0 69887.0 True False 79409.1556949468 77705.05310943097 88048.55472202977 89412.60086252312 79532.99697331623 75314.08952459205 74567.52418337137 71141.25478186664 53954.385827446175 65426.751826728985 1.2137108060208721 1.1876648456463017 1.3457576948831356 1.3666061414651358 1.2156036292913501 1.1511207177768492 1.1397100131281173 1.0873419938417772 0.8246532851017071 1.0 15.997593028060798 1.837079500904949 1.0655771792440532 0.9265506960896523 1.26724109516518 0.7359761922045264 0.0774679783029728 0.265230270999872 0.5556824264688928 0.06720876237019562 0.028327022332038557 68.71942246255085 -1.837079500904949 0.3406903990755277 AGHFDK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGHFDK 6 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 ;;; 101.72 0.0362 2558770000.0 7875200.0 7754200.0 6919880.0 6501460.0 6568670.0 6390850.0 8097500.0 6912230.0 10369400.0 8465100.0 False True 7832800.798216981 8012293.859487111 7894138.955324809 7324544.169390294 7405151.188942614 5949065.581942718 7705792.9895460475 7428055.702192742 7814000.31284124 7924850.0706632715 0.9883847301052363 1.0110341253202435 0.9961247070840935 0.9242501882155185 0.934421613394995 0.75068493774606 0.9723582049926542 0.9373118274742389 0.9860123842301595 1.0 22.917952210651087 3.74620860139184 5.321548482880015 0.9229418196856335 1.000494657778561 0.18670737878004207 0.06529131222267179 0.2707697945002144 26.602922294826406 0.017449324241406633 0.030087420171701428 5574.534420432349 -3.74620860139184 0.07755283809292746 AGHGAGKPTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGHGAGKPTAK 11 1 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 110.66 0.0010600999999999998 465030000.0 377330.0 382590.0 348850.0 348780.0 383980.0 365770.0 399780.0 352100.0 584870.0 463630.0 False True 375298.497205304 395324.27686946065 397965.0477414426 392935.51223878074 432877.57697223144 340485.1808299655 380441.1140920927 378375.4899275722 440736.625356478 434040.73646638734 0.8646619215069172 0.9107999403186781 0.9168840947542295 0.905296390928067 0.9973201605369454 0.7844544353184995 0.8765101570634594 0.871751101078675 1.0154268674055877 1.0 18.727470926185 1.2350304640353365 24.99779445763455 1.0077135037779281 0.8912556685506707 0.46279484256827097 0.050315209174746495 82.6405335449968 585151.1679671984 0.041972499302698 0.012109241870205335 17.18028895843655 -1.2350304640353365 -0.11645783522725739 AGHLILQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGHLILQDR 9 0 Q96P11-2;Q63ZY6;Q63ZY6-6;Q96P11-5;Q96P11;Q96P11-4;Q63ZY6-5;Q96P11-3;Q63ZY6-2 Q96P11-2 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 0 ; 98.033 0.0055928 141100000.0 232149.0 307330.0 311250.0 290500.0 255890.0 269000.0 291020.0 204620.0 331280.0 276390.0 False True 230899.1355781787 317559.2932650916 355071.2945665022 327277.2702143636 288476.0747211425 250404.66315788828 276942.25079563924 219889.78343930634 249640.48292457082 258750.5535706162 0.8923618998757562 1.2272796671657198 1.3722532750817822 1.264836985653233 1.1148809953846681 0.9677454200674773 1.07030592581924 0.8498137700768077 0.9647920728271635 1.0 17.981202423552073 2.856203119723229 2.76268927757152 0.957396908684877 1.20460865871324 0.40256772289069687 0.12522370282288747 0.2636379844400738 3.904063702758402 0.042642539909129515 0.0456332896277287 718.1300825008328 -2.856203119723229 0.24721175002836304 AGHSENGVEEDTEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGHSENGVEEDTEGR 15 0 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 0 ; 144.41 1.0631e-05 0.0 415000.0 443640.0 422910.0 365590.0 402410.0 394950.0 423240.0 357930.0 456920.0 383500.0 False True 412765.68611083453 458406.28921395674 482452.0520003832 411873.65651521325 453654.5282290622 367648.03611229704 402766.26426618925 384640.55413171253 344318.18841431715 359024.7016691319 1.1496860360634156 1.276809888241095 1.3437851205151863 1.1472014449155803 1.2635746958913674 1.0240187775467111 1.1218344097041226 1.0713484402145332 0.9590376005148307 1.0 18.453723582411545 2.5062861140240713 0.8018119527413254 1.0050632421292893 1.2571118080675108 0.648891976512451 0.07167609059735978 0.39975051188502514 0.5224672765405751 0.05124770641380482 0.03869840035728021 320.83823167310015 -2.5062861140240713 0.25204856593822145 AGIEAGNINITSGEVFEIEEHISER ddPTM_BT-474_Trastuzumab_2h_R1 2 AGIEAGNINITSGEVFEIEEHISER 25 0 O43172-2;O43172 O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 0 ; 245.04 8.3809e-39 76931000.0 38033.0 63685.0 66705.0 68881.0 68563.0 70346.0 71328.0 64923.0 63424.0 75218.0 False True 37828.234553863535 65804.71672660449 76096.48418974628 77601.32753747197 77294.09164526034 65483.14659667206 67877.59214057928 69767.88393231417 47794.00503805842 70417.52284263038 0.537199166156446 0.9344934906850582 1.080646991229829 1.1020172878119556 1.097654227598971 0.9299268698078785 0.9639304167553954 0.990774470840617 0.6787231800935235 1.0 16.103646856317216 4.728869034711746 4.064698945321253 0.9872210305826428 0.5022465085848067 0.5659812437204879 0.11553768101571142 0.15610248975430244 5.559374154918063 0.02810320548371797 0.21911698171361554 53563.51077184883 -4.728869034711746 -0.4849745219978361 AGIIQDTWHK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGIIQDTWHK 10 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 133.89 0.0001851 509900000.0 479230.0 577120.0 532190.0 466640.0 479570.0 590710.0 575070.0 479200.0 633050.0 589690.0 False True 476649.8789274585 596329.0903235934 607117.7261215948 525716.5761543222 540640.3968659121 549875.6080817692 547251.6671192641 514960.33732829447 477043.3099354011 552055.4793409914 0.8634093796088261 1.0801977566375267 1.0997404225501632 0.9522893908813099 0.9793225809683008 0.9960513547264772 0.9912983161991948 0.9328054092371681 0.8641220453148386 1.0 19.074453733737627 1.72525638832465 3.7376401344365724 0.9220762513378452 1.0004269206209784 0.1412752271847717 0.06873225200540148 0.32673884020456795 10.134980355964178 0.03759271729985884 0.018191816138171512 53.11979475432629 -1.72525638832465 0.07835066928313317 AGKEPAKPS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGKEPAKPSPSR 12 2 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 AGKEPAKPS(0.595)PS(0.405)R;AGKEPAKPS(0.625)PS(0.375)R;AGKEPAKPS(0.943)PS(0.057)R 103.61 0.0017543 918240000.0 919470.0 764340.0 722630.0 626060.0 654610.0 968430.0 984940.0 865280.0 1277690.0 970260.0 True False 914519.6756827201 789780.5948467131 824370.0227874418 705319.1318086229 737970.7033225485 901484.7135390098 937294.6893638137 929851.5874028112 962820.419668847 908337.1761186221 1.0068063927434043 0.8694795452735864 0.9075594883279172 0.7764948417310109 0.8124413738915108 0.9924560364149211 1.0318796962257217 1.0236854902010302 1.0599812987761164 1.0 19.792868401929887 2.586919008744008 4.971764656121729 1.0282670562320386 0.8712347775923142 0.6165417767432233 0.05842996036675796 0.15461118017888986 5.79657262663785 0.020059010906488157 0.01873900336825984 386.2949304810933 -2.586919008744008 -0.15703227863972447 AGKEPAKPSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 AGKEPAKPSPSR 12 2 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 AGKEPAKPS(0.396)PS(0.604)R;AGKEPAKPS(0.392)PS(0.608)R 79.652 0.011719 2176530000.0 1281250.0 1073560.0 985960.0 886720.0 904090.0 1369130.0 1310290.0 1170520.0 1735340.0 1284120.0 True False 1274351.8923602588 1109292.7956192768 1124774.597882051 998978.6610825504 1019220.5025387382 1274485.2656853495 1246906.266906118 1257870.1461801247 1307688.7093646603 1202166.3622095569 1.0600462069309828 0.9227448300752815 0.9356230828275204 0.830982044154395 0.8478198480495096 1.0601571510808803 1.0372160676782956 1.0463361692038908 1.0877768256309848 1.0 20.19720512704301 2.7227740843662853 24.681926961008955 1.0481179638593456 0.915610999653587 0.5188334196993962 0.06101290168524783 559.5203528702115 874797.4385518741 0.020468250872494702 0.019357457437572573 528.1704313408807 -2.7227740843662853 -0.13250696420575858 AGKES(ph)DEKEQEQDKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGKESDEKEQEQDKDR 16 3 F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 F8VU11 PRPF40B Pre-mRNA-processing factor 40 homolog B 1 AGKES(1)DEKEQEQDKDR;AGKES(1)DEKEQEQDKDR 106.73 0.006535300000000001 550230000.0 1131630.0 496160.0 407330.0 379830.0 401000.0 819710.0 743670.0 705440.0 1503130.0 624050.0 True False 1125537.429815913 512674.3856649465 464678.5234241704 427916.4390551532 452064.9730867873 763045.3770897859 707695.8410047188 758083.5149517378 1132703.752410078 584222.594723915 1.9265558024982006 0.8775326224882146 0.7953792400716078 0.7324544495876146 0.7737889242377194 1.306086727868471 1.211346235828406 1.2975936257822824 1.9388222274172018 1.0 19.156158629703846 2.1650419667194414 1.5871966318798785 1.4340755553068443 0.9984187681788101 0.13610799230383075 0.39440512466479727 0.6924032381649597 3.382014947398244 0.22931384516082712 0.1294190052266913 146.23184743044226 -2.1650419667194414 -0.43565678712803413 AGKPVICATQMLESMIK ddPTM_BT-474_Trastuzumab_2h_R1 3 AGKPVICATQMLESMIK 17 1 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;; 234.81 3.4896e-20 1575845000.0 2534440.0 2468170.0 2318270.0 1999449.0 2003077.0 2884220.0 2930110.0 2569470.0 3549030.0 2826130.0 False True 2520794.856642754 2550321.5464097285 2644662.265235932 2252579.038391874 2258156.9827824524 2684840.660123581 2788369.38519281 2761216.8989042845 2674419.1110655367 2645763.963828377 0.9527663431454426 0.963926329512575 0.9995835990634437 0.8513907775553906 0.8534990322851538 1.014769532289895 1.0538995251708265 1.043636899078801 1.0108305758294842 1.0 21.335252929730043 2.569317204607241 7.511526764123584 1.0331212874605062 0.9267747432022782 0.550091805935444 0.04533727512413661 0.22421037210314596 16.12518366909315 0.016038538420914822 0.015081989679277517 370.9515623950684 -2.569317204607241 -0.10634654425822809 AGLEDLQVAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGLEDLQVAFR 11 0 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 0 196.37 1.4123e-07 182800000.0 73135.0 81552.0 87207.0 86701.0 78025.0 77262.0 73822.0 74268.0 87571.0 66762.0 False True 72741.24928606242 84266.40902077503 99484.98758316763 97677.33771034621 87961.02125959247 71921.05979518498 70250.947832574 79810.25528526261 65990.30044128119 62501.192002176176 1.1638377918221097 1.3482368307126211 1.5917294438113077 1.5628075974446258 1.4073494991348297 1.1507150102462176 1.1239937284736585 1.2769397307251957 1.0558246703356238 1.0 15.931596084191845 2.7530827051756424 5.565049641776217 1.1492267161407976 1.43060692740821 0.5537045200812885 0.13019914183260237 0.14859254200238842 16.55475609978177 0.04338906765295916 0.04424515586992681 566.347131484404 -2.7530827051756424 0.2813802112674124 AGLESGAEPGDGDS(ph)DTTK ddPTM_BT-474_Trastuzumab_2h_R1 8 AGLESGAEPGDGDSDTTK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(0.999)DT(0.001)TK;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(0.999)DT(0.001)TK;AGLESGAEPGDGDS(0.968)DT(0.016)T(0.016)K;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(1)DTTK 388.83 1.4933e-126 9482540000.0 8706260.0 6796445.0 6214758.0 5744796.0 6304280.0 8476640.0 7615548.0 7820427.0 11387301.0 7902032.0 True False 8659386.463516418 7022660.563287239 7089741.906755089 6472086.5845728 7107092.689604914 7890669.828664251 7247154.849021472 8404026.974063663 8581053.250565836 7397717.552490037 1.170548402540958 0.9493009855348484 0.9583688288246035 0.874876141005725 0.9607142526295425 1.0666357255026975 0.9796474111913226 1.1360297165218083 1.1599595672150924 1.0 22.81864878822339 1.75137771276464 8.820420059668542 1.109686494762033 0.9880468231616273 0.23873148166649505 0.0841313959108516 0.15331781487586882 47.19665014455676 0.040041493014675265 0.021659792501312853 56.412807362129264 -1.75137771276464 -0.12163967160040579 AGLESGAEPGDGDS(ph)DTTKK ddPTM_BT-474_Trastuzumab_2h_R1 6 AGLESGAEPGDGDSDTTKK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 AGLESGAEPGDGDS(0.999)DTT(0.001)KK;AGLESGAEPGDGDS(1)DTTKK;AGLESGAEPGDGDS(1)DTTKK;AGLESGAEPGDGDS(1)DTTKK;AGLESGAEPGDGDS(0.999)DT(0.001)TKK;AGLESGAEPGDGDS(0.999)DT(0.001)TKK 273.45 1.3652999999999996e-39 8701430000.0 8977500.0 5592250.0 4776590.0 4532680.0 4851100.0 7715190.0 7088570.0 7081420.0 12521100.0 6712560.0 True False 8929166.137494018 5778384.660663487 5449092.353135439 5106516.8232538495 5468858.830277595 7181857.074903739 6745668.78813293 7609871.519122149 9435442.679144066 6284158.673888252 1.4209008080264145 0.9195160339718439 0.8671156531704625 0.8126015093273019 0.8702610984349637 1.1428510080029608 1.0734402388918554 1.2109610711681198 1.5014647415492441 1.0 22.583288178209244 2.0786176324911647 1.5776501366291187 1.2581010203125025 0.9690372746341342 0.21124464472695959 0.2001562225137421 0.5381497958168753 2.535324608568626 0.12401186916780434 0.06441847269310826 119.84436882763627 -2.0786176324911647 -0.28906374567836823 AGLGS(ph)PERPPK ddPTM_BT-474_Trastuzumab_2h_R1 7 AGLGSPERPPK 11 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK 145.6 2.1902e-05 18448130000.0 16612701.0 18644100.0 15570530.0 16175480.0 17716310.0 19877280.0 19005850.0 20654670.0 27392550.0 19978660.0 True False 16523260.063660594 19264657.59790355 17762725.282527067 18223294.109490693 19972377.065703698 18503210.419684123 18086464.426102355 22196026.35768911 20642023.093864594 18703604.814208653 0.8834264960040373 1.0299970401036638 0.949695283822142 0.9743198859530501 1.0678357067580464 0.9892857876053768 0.9670042008352597 1.1867245153098698 1.1036387530056972 1.0 24.156813017018568 1.7546602336468462 24.999999999999957 1.1134698322492846 0.9844547565922865 0.41287248274543575 0.06261812534053525 4.761296396231495 7402.249823142115 0.027448667229925613 0.015221774522463935 56.84080679471941 -1.7546602336468462 -0.1290150756569981 AGLGS(ph)PERPPKT(ph)SPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 AGLGS(0.999)PERPPKT(0.503)S(0.503)PGS(0.994)PR 79.237 0.016958 331200000.0 398790.0 340020.0 267520.0 302890.0 343200.0 480690.0 403160.0 464660.0 697460.0 502150.0 True False 396642.958949734 351337.3601535692 305184.4906744753 341235.8429439884 386904.4856942276 447461.0317225476 383657.6105792385 499335.2886956714 525580.3284851833 470102.3570877557 0.8437374392396234 0.7473635365924868 0.6491873228738256 0.7258756264442399 0.8230217948513769 0.9518374561968393 0.8161150540830404 1.0621841842891648 1.1180125361232156 1.0 18.842615388642766 2.248504026941834 0.9166625226980717 1.0703473909613148 0.7383419530773023 0.7217970132530915 0.07684723881821624 0.30220559763901 0.4845172687292593 0.059485491554399764 0.034441833828809325 177.21644772347227 -2.248504026941834 -0.3320054378840125 AGLLALEFYTPEAFNWR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGLLALEFYTPEAFNWR 17 0 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ; 202.44 2.4624000000000003e-11 159782000.0 168690.0 203590.0 181980.0 183361.0 188866.0 204013.0 206070.0 188221.0 216410.0 202359.0 False True 167781.79178322104 210366.37007724633 207601.20220148424 206574.4837995732 212916.96560351417 189910.06150494493 196101.60683615334 202267.00678687182 163078.65524543117 189444.27537174363 0.8856524772468599 1.110439308152477 1.095843101060254 1.0904234682954406 1.1239028742658517 1.0024586973255714 1.0351413704707948 1.067686032686743 0.8608265144218499 1.0 17.53141401957465 1.2560039037442874 24.998012602298672 0.9304132531252901 1.0566234735585316 0.3065313772259749 0.07248219850562569 226.83410790794323 325078.6805702581 0.04623869721612724 0.016801437950095283 18.03033947724111 -1.2560039037442874 0.12621022043324148 AGLLALMLHQTIQHDPLTTDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGLLALMLHQTIQHDPLTTDLR 22 0 Q9P0U4;Q9P0U4-2;A0A669KB29 Q9P0U4 CXXC1 CXXC-type zinc finger protein 1 0 ; 157.14 3.8149e-09 107592000.0 32693.0 44852.0 45533.0 44654.0 41795.0 39970.0 41015.0 35602.0 48154.0 46558.0 False True 32516.984520533755 46344.871706393475 51943.65062006914 50307.191821522225 47117.34551162663 37206.96797925943 39030.947757484544 38258.802023292905 36287.09193054152 43586.6285796908 0.746031193054584 1.0632818645667832 1.1917336190639047 1.1541886459408992 1.081004588952791 0.8536326206380649 0.895479853095842 0.8777646555833778 0.8325280737003252 1.0 15.411597995274665 2.740865663495711 24.783441277815417 0.8842137204581505 1.0621068872331574 0.2922980739317196 0.11946802175069247 215.3800524452871 2315735.7571571423 0.03818678937261554 0.03876541212771233 550.6373462378549 -2.740865663495711 0.17789316677500688 AGLLVLAVLSDGAGDHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGLLVLAVLSDGAGDHIR 18 0 Q8TEX9;Q8TEX9-2;H0YN14 Q8TEX9 IPO4 Importin-4 0 ; 182.35 6.8825e-14 302980000.0 319640.0 379770.0 365750.0 362850.0 353980.0 369490.0 364520.0 345790.0 380750.0 403570.0 False True 317919.0937553429 392410.4148741868 417244.4208440093 408786.77279615134 399057.2547961622 343948.025985904 346886.7749983729 371594.6056860412 286919.2642886095 377813.8170863397 0.8414702675701524 1.0386343673198999 1.104365171347502 1.0819794150162951 1.0562272652536893 0.9103638099802566 0.918142109448318 0.9835389519413016 0.7594197229241128 1.0 18.527315938146778 2.7340053493967673 23.945461778358652 0.9194696772490585 1.0329449141273739 0.2695049938298316 0.09001826988854934 293.2477608376012 1541495.3434604863 0.028670516385724664 0.02790050846914806 542.0075665068666 -2.7340053493967673 0.1134752368783154 AGLNEMVEYITHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGLNEMVEYITHSR 14 0 E9PFR3;Q14738;H0Y8C4;Q14738-2;Q14738-3 E9PFR3 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 0 ; 205.27 1.2469e-08 411140000.0 538860.0 671380.0 582870.0 651830.0 597550.0 709750.0 642220.0 562050.0 755810.0 689710.0 False True 535958.8376329741 693726.4774422196 664933.0296031391 734351.6111663636 673644.450543666 660686.6530717881 611153.3650813529 603993.0250320706 569550.7528351245 645692.117309561 0.8300532456028452 1.0743920497787798 1.0297988960648152 1.137309239930363 1.043290497877805 1.0232224234433984 0.9465089455139664 0.9354195425968026 0.882077909218253 1.0 19.300486889027383 2.226479896146029 3.7065183829342416 0.933819430482827 1.0327978870925913 0.20390842220676908 0.07806449292382996 0.3152046390793081 9.355301489908353 0.02999228783262684 0.022501965241557127 168.45344464639646 -2.226479896146029 0.09897845660976434 AGLQEGDQVLAVNDVDFQDIEHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGLQEGDQVLAVNDVDFQDIEHSK 24 0 Q5EBL8;Q5EBL8-2 Q5EBL8 PDZD11 PDZ domain-containing protein 11 0 183.15 2.8991999999999995e-17 95922000.0 99258.0 109800.0 82348.0 87508.0 86508.0 111780.0 111950.0 100610.0 147020.0 117360.0 False True 98723.60595660056 113454.62662449843 93941.88261835264 98586.5038276027 97524.28102691226 104052.91170181685 106534.55080946966 108118.02908722823 110788.89096706847 109869.98432304898 0.8985493769283256 1.0326262201959506 0.8550277238789514 0.8973015190184279 0.8876335209092517 0.9470549426481368 0.9696419951806655 0.9840542870137353 1.0083635821892687 1.0 16.745437780807276 2.165082828527418 1.7616137743387732 0.9964489328651783 0.9169355228913281 0.4055103924293266 0.044011104298927406 0.3955586683406513 2.4005775039829236 0.02458856049852 0.014337040288709966 146.24560670906283 -2.165082828527418 -0.07951340997385026 AGLQFPVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGLQFPVGR 9 0 A0A0U1RR32;A0A0U1RRH7;P20671;A0A3B3IS11;Q71UI9-5;Q7L7L0;P04908;Q99878;Q96KK5;Q6FI13;P0C0S8;Q16777;Q9BTM1;Q9BTM1-2;Q96QV6;Q8IUE6;P16104;Q71UI9;P0C0S5;C9J0D1;A0A494C189;Q71UI9-2 A0A0U1RR32;Q7L7L0;Q99878;P16104;Q71UI9 HIST1H2AD;H2AFV;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG;HIST2H2AC;H2AFJ;HIST1H2AA;HIST2H2AB;H2AFX;H2AFZ Histone H2A type 1-D;Histone H2A.V;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-C;Histone H2A.J;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2AX;Histone H2A.Z;Histone H2A 0 ;;; 181.74 0.00010965 13247320000.0 4838080.0 7324590.0 7755020.0 6419440.0 4667430.0 5488400.0 6122760.0 5046540.0 9103540.0 5566220.0 False True 4812032.314841219 7568384.550341852 8846859.408157794 7232140.445799981 5261799.544474979 5108999.826303909 5826578.707585419 5423138.440610877 6860094.548186272 5210979.074119303 0.9234411127729372 1.4523920443148142 1.6977345873631209 1.387865954349907 1.0097525761728883 0.9804299256694616 1.1181351190841533 1.04071391642029 1.3164694101838592 1.0 22.313123030632703 3.246708750668553 24.73799261272888 1.0752690990518803 1.3953163682515475 0.3292096805794259 0.19939851259962993 173.79066571456417 527630.1376520777 0.05613814546565854 0.07470525168784428 1764.8538661950004 -3.246708750668553 0.3200472691996672 AGLTMNDIDAFEFHEAFSGQILANFK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGLTMNDIDAFEFHEAFSGQILANFK 26 0 P55084-2;P55084;B5MD38;F5GZQ3 P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase 0 ; 149.74 1.4897e-07 37526000.0 13333.5 17323.0 16129.0 13975.2 18391.1 25042.0 15730.8 12856.3 16566.4 15245.8 False True 13261.71391749111 17899.585583025364 18399.823004218808 15744.458887090468 20733.097572410003 23310.905482527254 14969.841106508296 13815.702388968602 12483.832698386906 14272.799991413933 0.9291599353643952 1.254104702216327 1.2891530053869993 1.1031093335969004 1.452630008469423 1.633239833568071 1.048837026758147 0.9679742165012958 0.8746589811317181 1.0 13.800980765342118 2.016772482914219 24.998775378527544 0.960090805450364 1.2818860580551994 0.41798150197700945 0.17853792534074503 237.31675799875254 353710.5305404194 0.06982869802790337 0.05156012078742333 103.93755177811269 -2.016772482914219 0.32179525260483544 AGLVGPEFHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AGLVGPEFHEK 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 186.87 3.8374e-06 2592480000.0 2541970.0 2606810.0 2475300.0 2467830.0 2375410.0 2868030.0 2873330.0 2574090.0 3322400.0 2839100.0 False True 2528284.3159594163 2693576.095000078 2823800.724306708 2780257.0249676905 2677904.383341858 2669769.8367164205 2734336.050713474 2766181.666764173 2503639.037879121 2657906.207324203 0.9512315780716426 1.0134202958620517 1.0624154895027376 1.0460327822352549 1.0075240337535416 1.004463524468819 1.0287556585626154 1.040737125765237 0.9419591372261448 1.0 21.341858764752516 1.2456223632553298 24.998902810005706 0.9709795641855457 1.0219323998338392 0.2714811940287698 0.03144532466707053 182.89676770102085 647478.8428643482 0.022185604254701327 0.007715598886235195 17.60444602381387 -1.2456223632553298 0.05095283564829356 AGLYGLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGLYGLPR 8 0 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 121.68 0.0033098 544110000.0 1154240.0 1275220.0 1341740.0 1137370.0 935260.0 1268890.0 1273260.0 1225480.0 1759650.0 1282180.0 False True 1148025.7000881208 1317664.926813233 1530645.3293868538 1281360.925382828 1054359.8172796725 1181174.6209457724 1211667.5494744559 1316931.5404613512 1326007.8356019724 1200350.1746704758 0.9564089915705479 1.0977337735423438 1.2751656655584291 1.0674892647344278 0.878376859960152 0.9840250335865802 1.0094283943492464 1.097122796539668 1.1046841693225 1.0 20.195023909794468 3.4774745642553793 24.999841836707105 1.0169896898250124 1.1190261712368947 0.1815553859631962 0.0927549995682264 21.35514590893347 1511126.569832678 0.027238063403536943 0.03729523518601246 3002.44156881477 -3.4774745642553793 0.10203648141188237 AGMS(ph)SNQSIS(ph)SPVLDAVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMS(0.369)S(0.369)NQS(0.38)IS(0.78)S(0.102)PVLDAVPR 77.554 0.025431 65973000.0 77218.0 93488.0 90522.0 95108.0 112660.0 98265.0 88111.0 87035.0 89595.0 94469.0 True False 76802.26686772623 96599.6915653107 103266.71076867118 107148.66304835716 127006.58321186411 91472.17184092895 83848.73431329326 93529.99365477485 67515.51276149166 88439.90754101996 0.8684118855744394 1.092263597409417 1.1676483347834155 1.211542006629301 1.4360777475141102 1.0342861541154662 0.948087086979402 1.0575541772405632 0.7634055104611772 1.0 16.43240989644735 2.487892163128005 23.954674510522008 0.9629650991166607 1.1634824254798253 0.3118637124099358 0.148033136487938 399.9567063658234 889514.0122052958 0.05126605902379143 0.04560002953049764 307.5333103727861 -2.487892163128005 0.20051732636316455 AGMSS(ph)NQSISS(ph)PVLDAVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMS(0.208)S(0.766)NQS(0.035)IS(0.089)S(0.902)PVLDAVPR 128.29 3.1786e-05 158950000.0 274320.0 301590.0 255580.0 251430.0 296330.0 312810.0 294030.0 269430.0 313400.0 317890.0 True False 272843.0915998169 311628.2408349948 291563.4424588161 283261.0122203015 334065.86901448347 291186.18097553536 279806.6455963226 289536.2347378182 236166.76934484605 297601.9880406781 0.9168053392254996 1.0471309109413596 0.979709323779663 0.9518115590732668 1.122525663265466 0.9784416525326916 0.940204221882002 0.9728975153830041 0.7935658323376701 1.0 18.183024638405765 1.8296537505228685 1.709883292025267 0.9074761342683406 1.0024522141760932 0.19431473029790092 0.07262437321671143 0.5316344804637855 2.963925478988799 0.04873423459769743 0.020969108928684452 67.55441702871744 -1.8296537505228685 0.09497607990775259 AGMSSNQS(ph)IS(ph)SPVLDAVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMS(0.006)S(0.011)NQS(0.973)IS(0.765)S(0.244)PVLDAVPR;AGMSSNQS(0.998)IS(0.713)S(0.289)PVLDAVPR;AGMS(0.03)S(0.034)NQS(0.875)IS(0.569)S(0.491)PVLDAVPR 175.33 4.0596e-12 457273000.0 338664.0 495964.0 432170.0 458829.0 462483.0 428925.0 396424.0 363074.0 347095.0 397648.0 True False 336840.67065310734 512471.8619234308 493015.7795110208 516916.7043552033 521377.468698495 399274.42433084437 377247.45663325704 390168.4255324153 261558.0880847138 372269.76419641904 0.9048295162520413 1.3766142491578703 1.3243508523321628 1.3885540918721104 1.400536704408266 1.0725405679741882 1.013371197221947 1.0480798148477952 0.7026036311310769 1.0 18.505988919486594 2.501936982863867 3.100814549359354 0.9590684998099835 1.2923056121709526 0.4917158534059376 0.16132724312897265 0.22236173048450997 4.364339272268167 0.057868532392359985 0.050614479095897176 317.64131322997093 -2.501936982863867 0.3332371123609691 AGMSSNQS(ph)ISS(ph)PVLDAVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMSSNQS(0.976)IS(0.328)S(0.697)PVLDAVPR;AGMSSNQS(0.994)IS(0.206)S(0.8)PVLDAVPR;AGMSS(0.001)NQS(0.997)IS(0.205)S(0.797)PVLDAVPR;AGMSSNQS(0.996)IS(0.488)S(0.516)PVLDAVPR 196.83 1.1934e-15 1317400000.0 1316310.0 1381550.0 1280460.0 1333450.0 1317420.0 1429110.0 1332490.0 1293290.0 1693470.0 1381290.0 True False 1309223.13321579 1427534.0565853885 1460737.638042161 1502264.6332782914 1485185.6280398888 1330318.9894630834 1268032.3680938822 1389801.8669935516 1276137.009835406 1293134.8896181358 1.012441272543814 1.1039328286989 1.1296096407030813 1.161723069525958 1.1485156266091203 1.028755004712562 0.9805878553538476 1.0747539782210669 0.9868552925768252 1.0 20.302441342873728 2.6747058599668776 7.233301286117296 1.0201553181938503 1.1145715596086683 0.5352184910672328 0.045014296924587804 0.23339684301508135 23.135170509244727 0.01518176773215516 0.014327050229278673 472.8309104104507 -2.6747058599668776 0.09441624141481797 AGMSSNQSIS(ph)SPVLDAVPR ddPTM_BT-474_Trastuzumab_2h_R1 5 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMSSNQSIS(0.605)S(0.394)PVLDAVPR;AGMSSNQS(0.008)IS(0.709)S(0.283)PVLDAVPR;AGMSSNQS(0.001)IS(0.5)S(0.5)PVLDAVPR;AGMSSNQSIS(0.5)S(0.5)PVLDAVPR;AGMSSNQSIS(0.5)S(0.5)PVLDAVPR 463.44 1.2643999999999985e-214 12373260000.0 1421640.0 1652800.0 1525520.0 1528690.0 1542630.0 1574060.0 1561430.0 1441310.0 1623100.0 1575020.0 True False 1413986.048199051 1707812.4488613026 1740299.9559424592 1722221.9972598809 1739074.7866156378 1465248.9371386808 1485897.6656581531 1548867.871023882 1223108.7534257171 1474500.8751575386 0.9589591108570743 1.1582308818086233 1.1802637660398283 1.1680033740745492 1.1794328615978824 0.993725376380079 1.0077292531273654 1.050435369092879 0.829506970143397 1.0 20.491795248003964 2.7251984464493617 22.729880839185263 0.9878818017540628 1.135620438021801 0.4641988853036344 0.08139540853026783 220.32542992002422 374785.6704977988 0.02623109864288465 0.024899397948810933 531.1270819130905 -2.7251984464493617 0.1477386362677381 AGMSSNQSISS(ph)PVLDAVPR ddPTM_BT-474_Trastuzumab_2h_R1 16 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMSSNQS(0.001)IS(0.008)S(0.991)PVLDAVPR;AGMSSNQS(0.001)IS(0.045)S(0.954)PVLDAVPR;AGMSSNQS(0.001)IS(0.211)S(0.788)PVLDAVPR;AGMSSNQS(0.001)IS(0.284)S(0.715)PVLDAVPR;AGMSSNQS(0.005)IS(0.066)S(0.929)PVLDAVPR;AGMSS(0.002)NQS(0.026)IS(0.1)S(0.873)PVLDAVPR;AGMSSNQSIS(0.045)S(0.955)PVLDAVPR;AGMSSNQSIS(0.102)S(0.897)PVLDAVPR;AGMSSNQSIS(0.044)S(0.956)PVLDAVPR;AGMSSNQS(0.008)IS(0.062)S(0.929)PVLDAVPR;AGMSSNQSIS(0.082)S(0.917)PVLDAVPR;AGMSSNQSIS(0.221)S(0.779)PVLDAVPR;AGMSSNQS(0.058)IS(0.428)S(0.515)PVLDAVPR;AGMSSNQSIS(0.245)S(0.755)PVLDAVPR;AGMSSNQSISS(1)PVLDAVPR;AGMS(0.002)S(0.002)NQS(0.032)IS(0.224)S(0.74)PVLDAVPR 383.2 9.264399999999994e-127 55756440000.0 6412759.0 7079669.0 6579878.0 6765836.0 6959154.0 7047506.0 6876265.0 6461679.0 7290687.0 7057189.0 True False 6378233.418068503 7315311.502914724 7506267.629075157 7622390.14388321 7845361.011762625 6560328.49826466 6543633.792066799 6943882.2987211095 5493994.879050629 6606793.156056523 0.9654053437743095 1.1072408852710476 1.1361438827843544 1.1537201125928511 1.1874688410020362 0.9929671390197423 0.9904402389331917 1.0510215977256034 0.8315675622467794 1.0 22.655518747185607 2.64310687538961 7.498617555313227 0.9831205144275408 1.1135433020900865 0.44575104895167617 0.07585541706344542 0.2833924566760532 19.64964157302311 0.024907843646363816 0.023458357159800557 439.6497954032819 -2.64310687538961 0.13042278766254567 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMS(0.003)S(0.003)NQS(0.003)IS(0.031)S(0.961)PVLDAVPRT(0.93)PS(0.07)R;AGMSSNQSIS(0.035)S(0.965)PVLDAVPRT(0.856)PS(0.144)R;AGMSSNQSIS(0.014)S(0.986)PVLDAVPRT(0.901)PS(0.099)R;AGMSSNQSIS(0.051)S(0.949)PVLDAVPRT(0.887)PS(0.113)R;AGMSSNQSIS(0.007)S(0.993)PVLDAVPRT(0.97)PS(0.03)R;AGMSSNQSIS(0.017)S(0.983)PVLDAVPRT(0.877)PS(0.123)R 185.79 6.7123e-17 3057560000.0 855717.0 1161730.0 1151590.0 1465470.0 1381100.0 1230130.0 1410490.0 1081586.0 1537640.0 1326020.0 True False 851109.9147510958 1200397.4807693837 1313723.862200281 1650998.3517419768 1556974.8985789581 1145094.0085145463 1342259.2101049467 1162299.4395024225 1158709.2253203865 1241392.2683371617 0.6856091635653192 0.9669767658351133 1.0582665090705028 1.3299570118585322 1.2542166874170384 0.9224272115440139 1.0812530771622217 0.9362869973882763 0.9333949105970115 1.0 20.243527634963293 -3.112545894060903 9.92824697597143 1.0005643952666845 1.0263054289056024 0.0 0.172046725576572 0.0 0.0 0.0 0.03978016404407811 0.0007717099608408829 3.112545894060903 0.025741033638917887 AGMSSNQSISSPVLDAVPRT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMSSNQSISSPVLDAVPRT(1)PSR;AGMSSNQSISSPVLDAVPRT(0.996)PS(0.004)R 268.27 3.3431e-44 902590000.0 202373.0 269216.0 263276.0 314753.0 276554.0 259906.0 286615.0 244090.0 323343.0 289737.0 True False 201283.446253754 278176.6918154914 300342.9723639849 354600.6975276474 311771.5126360183 241939.30997291504 272750.3374743738 262305.23526390555 243659.45022422003 271245.7366036746 0.7420704515914858 1.0255523102357322 1.1072726013121643 1.3073042251932803 1.1494061309120487 0.891956175983772 1.0055470028378644 0.967039108331379 0.8982978065393089 1.0 18.049240936126374 2.7370698382582956 24.97566735991068 0.9563576987525325 1.0797192375712301 0.1441515519609955 0.13649468262064016 268.48721461075695 4498052.3727031 0.04591332857979344 0.04545070849876086 545.8456306688576 -2.7370698382582956 0.1233615388186976 AGMTHIVR ddPTM_BT-474_Trastuzumab_2h_R1 7 AGMTHIVR 8 0 P39023;H7C422;H7C3M2;F8WCR1 P39023 RPL3 60S ribosomal protein L3 0 ;;;;;; 152.63 0.00045401 3044000000.0 3775117.0 4928969.0 4787104.0 4438490.0 3939863.0 4176356.0 4301994.0 3676700.0 5726187.0 4513375.0 False True 3754792.1895269305 5093026.753540321 5461086.632946119 5000402.378911366 4441581.199652444 3887654.3398045492 4093890.115006991 3951074.023904306 4315044.940824686 4225327.54340526 0.8886393187167881 1.205356673825047 1.2924646851270944 1.1834354443635535 1.051180329578166 0.9200835437887558 0.9688929610667908 0.9350929563013407 1.021233240854772 1.0 22.010631751412568 3.026941809617414 3.9201844614919694 0.963443203817006 1.156538144004086 0.3935399730753574 0.10052983325808593 0.2063746288886652 7.020427955637209 0.030887064430655562 0.03617052070511161 1064.00044505415 -3.026941809617414 0.19309494018708007 AGNASKDEIDSAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGNASKDEIDSAVK 14 1 P23381;G3V277;G3V3P2;G3V227;G3V3X0;G3V4N8;G3V5W1;G3V3S7;G3V3R3;G3V4C7;G3V2C0;G3V339;G3V313;G3V4S4;G3V2F2 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS 0 72.898 0.034057 348610000.0 199630.0 226960.0 175020.0 204450.0 198400.0 195340.0 165400.0 191980.0 266450.0 161580.0 False True 198555.2142609783 234514.2263997827 199661.29469888864 230333.34903726916 223665.06399106895 181836.60558089902 157398.970110641 206306.52245468707 200786.96774707784 151267.82606440206 1.312607045575202 1.5503245634001417 1.3199191123027254 1.522685656493834 1.4786030169815745 1.2020838159165608 1.040531712564102 1.363849324884542 1.3273607016841313 1.0 17.20674564035671 2.73394785405321 24.27726357273717 1.2095498489553087 1.4414081998950905 0.4876282157541938 0.12705248283450357 243.78753815396686 1283065.2460294536 0.039937638691487067 0.03885159084499393 541.93581600153 -2.73394785405321 0.2318583509397818 AGNLGGGVVTIER ddPTM_BT-474_Trastuzumab_2h_R1 1 AGNLGGGVVTIER 13 0 P35268;K7ERI7;K7EMH1;K7EP65;K7EKS7;K7ELC4;K7EJT5 P35268 RPL22 60S ribosomal protein L22 0 128.36 0.00038661 187210000.0 107170.0 119420.0 99985.0 108110.0 116460.0 135520.0 137340.0 119440.0 138660.0 136590.0 False True 106593.00862770631 123394.82250908569 114062.01891480057 121796.71491523187 131290.49068749952 126151.82137976571 130696.33951025049 128353.21930403073 104489.10094880761 127872.70925941756 0.833586847772649 0.9649816854881247 0.8919965767159981 0.9524840415177314 1.0267279973019752 0.9865421801913913 1.0220815705492294 1.003757721623293 0.8171337070588593 1.0 16.96434886987424 6.095698651226235 0.7343680888905783 0.9780730696033877 4.1042875580088716e-17 0.27834085560058863 0.061616134442077516 22.127209812801684 1.903120230200483 0.021866363744874013 27.977397617615566 1246518.278500497 -6.095698651226235 -0.9780730696033877 AGNNMLLVGVHGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGNNMLLVGVHGPR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 170.07 3.2325e-06 1530730000.0 1594180.0 1979870.0 1793560.0 1765380.0 1607820.0 1786370.0 1822680.0 1534180.0 2121800.0 1865060.0 False True 1585597.11201005 2045768.7760933104 2046077.6580970103 1988876.926991511 1812566.346704235 1662882.4465626632 1734510.005086235 1648668.3020081893 1598910.8206633502 1746030.2740418017 0.9081154751914051 1.1716685595362895 1.1718454648330028 1.1390850184902894 1.038107055560046 0.9523789313877912 0.9934020222175765 0.9442380962798349 0.9157406056666522 1.0 20.7356471430861 2.957043821024881 3.3022648276631363 0.9596623974549164 1.107764833300367 0.42970402325377977 0.07370567272307538 0.2201989949162672 4.855039005769029 0.022984490587987582 0.02578657025626161 905.8239954126608 -2.957043821024881 0.14810243584545046 AGNS(ph)DS(ph)EEDDANGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGNSDSEEDDANGR 14 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 2 AGNS(1)DS(1)EEDDANGR;AGNS(1)DS(1)EEDDANGR 215.51 9.468e-12 294640000.0 718490.0 688190.0 636530.0 599420.0 625380.0 712840.0 705500.0 705440.0 806240.0 719600.0 True False 714621.7296717433 711095.9881303599 726147.8911820573 675306.5105400824 705018.4360823317 663563.0486448662 671372.2697282786 758083.5149517378 607552.9550625036 673674.511919445 1.0607819013897837 1.0555483034444824 1.0778912936947909 1.0024225328281864 1.0465268072463971 0.9849905806206486 0.9965825600487589 1.125296417689595 0.9018494010281809 1.0 19.36169219127273 3.74111089702753 24.936090612476576 1.0197168142506663 1.0638212802263511 0.16877867480476283 0.053350868335035925 476.39228523287215 4658005.153511721 0.013916743590147341 0.02361919197520816 5509.483630227345 -3.74111089702753 0.04410446597568485 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGSAR ddPTM_BT-474_Trastuzumab_2h_R1 6 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(0.997)PGS(0.003)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.993)PGS(0.007)AR 376.27 5.609399999999996e-137 6952310000.0 1682740.0 1905670.0 1833590.0 1785590.0 1717390.0 1965740.0 2022060.0 1583280.0 1932710.0 1967280.0 True False 1673680.3148099899 1969099.0739481584 2091743.5341500146 2011645.5109193304 1936089.4367319671 1829853.020654225 1924245.232780668 1701432.3933329356 1456419.5174871648 1841726.5061268546 0.9087561639810108 1.0691593281616867 1.1357514414824519 1.092260715272983 1.0512361256088765 0.9935530680407052 1.0448050926015884 0.9238246762876009 0.7907903332238024 1.0 20.81262740841386 1.6606442616638293 3.7092654875162174 0.8847575972122789 1.0478221165480461 0.4186719662984457 0.07403382158861523 0.16037123407265158 5.193160145872318 0.04277617399815626 0.019416851998521886 45.776676819893815 -1.6606442616638293 0.16306451933576727 AGPGDRDPPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGPGDRDPPTR 11 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 ; 76.165 0.032923 365380000.0 140610.0 150755.0 145059.0 140231.0 167890.0 151024.0 135238.0 146891.0 161349.0 140525.0 False True 139852.97138323978 155772.789041678 165482.04632456935 157984.23022179172 189269.79633800674 140584.066352256 128696.02128067029 157852.75231738426 121586.70091583136 131556.57419049478 1.0630633417128343 1.1840745321941721 1.2578774367060537 1.2008843434386602 1.4386950823448992 1.0686206084136043 0.9782561006363514 1.1998849414306916 0.9242160771059075 1.0 17.005323819596168 2.51726890476262 24.982563830973447 1.052674189179203 1.2291968474718922 0.4341886613201045 0.11028833293462598 541.7523188628933 337113.9803144139 0.035635352516885474 0.03359271046265629 329.05531099598215 -2.51726890476262 0.1765226582926891 AGPGSS(ph)PLFSLLPGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGPGSSPLFSLLPGYR 16 0 Q9H0W8-2;Q9H0W8 Q9H0W8-2 SMG9 Protein SMG9 1 AGPGS(0.04)S(0.96)PLFSLLPGYR;AGPGS(0.03)S(0.97)PLFSLLPGYR 269.55 7.0692999999999985e-28 1491010000.0 800660.0 889770.0 763720.0 871530.0 917450.0 942490.0 989310.0 868460.0 1137160.0 1009980.0 True False 796349.3355216887 919385.456572677 871245.1376267598 981865.6086400166 1034281.8193478126 877337.8846828185 941453.2957687937 933268.8951505228 856922.155163322 945522.2117126185 0.8422322877844045 0.9723573335283154 0.921443332408531 1.038437380399102 1.093873635685855 0.9278871229198328 0.9956966468968986 0.9870406888274985 0.9062951081933699 1.0 19.850751824046277 5.334528445480842 1.2428210047610209 0.9893869672803406 0.46222541898848624 0.3883805722410485 0.05325889582199443 5.755599918243162 2.680040482263223 0.014901540823108964 5.586518607688398 216037.15304581187 -5.334528445480842 -0.5271615482918544 AGPIWDLR ddPTM_BT-474_Trastuzumab_2h_R1 7 AGPIWDLR 8 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5;O43390;O43390-3;B4DT28;O43390-2;O43390-4 O60506-2;O43390;O43390-2 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 ;;;;;; 153.73 0.0010152999999999998 7879532000.0 9721370.0 12973900.0 12408970.0 11206580.0 9172380.0 10395300.0 11273570.0 9621700.0 14213090.0 11135340.0 False True 9669031.22406574 13405728.418611826 14156045.115299221 12625331.878963463 10340428.224044345 9676697.378904063 10728224.34988041 10339720.112002617 10710464.415148482 10424673.06775579 0.9275140967223902 1.2859615195105387 1.3579366013006982 1.2111009905926409 0.9919187064031754 0.9282494823588026 1.0291185421501154 0.9918507798564984 1.0274148978615611 1.0 23.313498803668203 3.240077109032722 11.106388331501512 0.9934681351873299 1.213749937424209 0.4544384758493657 0.10708221688477526 0.08165989008579698 273.68020204978257 0.030334347587932124 0.03875186098944703 1738.1094028693014 -3.240077109032722 0.220281802236879 AGPPPEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGPPPEKR 8 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;Q9BUJ2-5 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;; 103.56 0.0076141 635650000.0 438617.0 561014.0 513096.0 502963.0 514583.0 412085.0 509701.0 482016.0 577626.0 584152.0 False True 436255.53480692965 579687.0118498753 585335.4568896194 566638.0642300417 580112.0948776025 383598.5338937484 485044.81538309477 517986.4815476532 435277.81209185097 546870.9192423114 0.7977303591336706 1.0600070171093219 1.0703356793968868 1.036145906268188 1.0607843175887772 0.7014425532541088 0.8869457093369006 0.9471823483781556 0.7959425099709591 1.0 19.060840820900737 2.784705480179526 24.99985608479992 0.8718282322098789 1.0134165991500697 0.2985280912671773 0.10574312604571424 528.0286751497707 286068.60215638287 0.03175912695704362 0.03368553772975159 609.1236756884825 -2.784705480179526 0.14158836694019072 AGQATEGHCPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGQATEGHCPR 11 0 C9J8T0;P57772-2;P57772 C9J8T0 EEFSEC Selenocysteine-specific elongation factor 0 ; 116.74 0.00094881 80570000.0 48693.0 63166.0 51632.0 60435.0 56323.0 49467.0 58465.0 50316.0 54922.0 53608.0 False True 48430.84229830089 65268.44212534669 58901.33680661084 68086.06480345984 63495.4001974243 46047.46272279278 55636.824592011035 54070.83541947095 41387.2090170952 50186.69154388213 0.9650136482089886 1.300512947108247 1.1736445458874054 1.3566557728541817 1.265184020785776 0.9175233773385898 1.1085971774681227 1.0773939017716003 0.8246650206241857 1.0 15.615017222029437 2.746471691225199 24.972399021459466 1.0078288297912759 1.2229914544517717 0.45280522253362443 0.1230457360484475 575.0036200244198 1815078.7285808914 0.03741578818494512 0.039035824120799284 557.7912422472413 -2.746471691225199 0.21516262466049585 AGQAVDDFIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AGQAVDDFIEK 11 0 P52209-2;P52209;K7EM49;K7EPF6;K7EMN2 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;; 147.72 8.182e-05 364360000.0 567820.0 560870.0 501340.0 503920.0 473330.0 621280.0 662420.0 608310.0 797260.0 610910.0 False True 564762.9202107334 579538.2188969246 571924.3142746022 567716.2203319189 533605.7698532897 578332.375935809 630376.2139098599 653705.1811355904 600785.9557366683 571921.2007736346 0.987483799248536 1.013318299991304 1.000005443933471 0.9926476227214035 0.9330057517215382 1.0112098924703299 1.1022081591959758 1.1429986862723869 1.0504698110928368 1.0 19.125456860803457 2.3246531580891587 4.721140262587508 1.0924690501181125 0.986874448060023 0.48783420096052155 0.041110907432787766 0.14397465097309367 5.674598000301299 0.014659133107063979 0.012005916420820557 211.18018115434887 -2.3246531580891587 -0.10559460205808946 AGQDMGLEHGFEKPLDSAMS(ph)AEEDTDVR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGQDMGLEHGFEKPLDSAMSAEEDTDVR 28 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 AGQDMGLEHGFEKPLDS(0.009)AMS(0.991)AEEDTDVR;AGQDMGLEHGFEKPLDS(0.014)AMS(0.986)AEEDTDVR;AGQDMGLEHGFEKPLDS(0.002)AMS(0.998)AEEDTDVR;AGQDMGLEHGFEKPLDS(0.003)AMS(0.997)AEEDTDVR 215.7 2.1490999999999998e-34 320482000.0 322634.0 352199.0 352579.0 311552.0 355209.0 441878.0 394394.0 397608.0 538810.0 447833.0 True False 320896.974392007 363921.73080620845 402219.0585283941 350994.4512558539 400442.76066130836 411332.0139289268 375315.6554886105 427279.52797251433 406027.4951840983 419251.91453087964 0.765403718552063 0.8680264017718734 0.9593732183154264 0.8371922443063805 0.9551363912300371 0.9811094467849603 0.8952031999867396 1.0191474699659204 0.9684571044557334 1.0 18.67745784636692 6.854263604106065 0.33083429602503045 0.989914320173172 8.034543546527216e-15 0.640485925041014 0.04602850145884425 17.353597818047152 0.49570683687163897 0.041079676451319644 9.129268128512894 7149301.361846706 -6.854263604106065 -0.989914320173164 AGQEHLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGQEHLLR 8 0 Q3KQV9;A0A087X226;Q16222;Q16222-3;Q16222-2 Q3KQV9;Q16222 UAP1L1;UAP1 UDP-N-acetylhexosamine pyrophosphorylase-like protein 1;UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 ; 105.52 0.004372 555750000.0 316240.0 435670.0 382330.0 433120.0 421830.0 396930.0 406180.0 353040.0 451670.0 396800.0 False True 314537.3989775667 450171.01258192316 436158.7407280659 487952.9475912057 475547.5501177045 369491.16337271617 386531.52164171863 379385.6375007956 340361.98056792165 371475.88428242865 0.8467236024894356 1.2118445143525483 1.1741239719250782 1.3135521530119596 1.2801572598348037 0.9946572011974713 1.0405292456288855 1.0212927771439215 0.9162424667899801 1.0 18.502909030408123 2.7162228242676356 24.13656087267667 1.0017883522593034 1.1765958397575025 0.32600901648264313 0.12198348674068711 621.9029149283332 671980.890201329 0.04004019042076801 0.037780723188939 520.2628602889824 -2.7162228242676356 0.17480748749819908 AGQHS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGQHSPLR 8 0 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 1 AGQHS(1)PLR;AGQHS(1)PLR 67.214 0.062595 322400000.0 375780.0 420370.0 389850.0 364250.0 343890.0 352820.0 341900.0 335800.0 443190.0 388170.0 True False 373756.8422330833 434361.761330969 444737.4913630545 410364.0126526066 387682.3531042772 328430.3838489442 325360.99081516446 360859.1011578495 333971.76294174336 363396.6582709437 1.0285092989336606 1.195282761810965 1.2238348406370434 1.1292454218074968 1.066829714254627 0.9037793176514873 0.8953329190291553 0.9930171148926685 0.9190281620386792 1.0 18.4711856273107 2.9901936302928585 2.866362227126642 0.9426424981521411 1.1535561892421609 0.730027766894555 0.0579631329277138 0.1337321763685405 2.2276896363718155 0.01850815056569301 0.021310018620132806 977.6730195347483 -2.9901936302928585 0.21091369109001978 AGRPQFDDQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AGRPQFDDQGK 11 1 Q8N3C0 Q8N3C0 ASCC3 Activating signal cointegrator 1 complex subunit 3 0 67.385 0.054828 75113000.0 259300.0 491580.0 518640.0 519810.0 552380.0 385460.0 438780.0 342210.0 275460.0 430040.0 False True 257903.95761093858 507941.94313361496 591660.0039003069 585617.8927026795 622722.3187872309 358814.05747524014 417554.53509762406 367747.4479071695 207576.57397489264 402594.47902423254 0.6406048047057672 1.261671407826339 1.469617778500868 1.454609844928923 1.5467731209243647 0.8912542922717099 1.0371591187977793 0.9134438425446825 0.5155971698320245 1.0 18.61896786244625 2.7093311693477613 22.09081588523715 0.8839836205395122 1.2947626888407213 0.35847203439137043 0.26873856366719945 193.61114388342338 146325.00625681353 0.08956273072116626 0.08446674747587755 512.0721650774669 -2.7093311693477613 0.41077906830120914 AGRPQYDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGRPQYDTK 9 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;; 147.4 8.434e-05 1660800000.0 1269890.0 1310950.0 1291000.0 1154670.0 989890.0 1324090.0 1397490.0 1030179.0 1893760.0 1270110.0 False True 1263053.0533380425 1354584.1782639914 1472761.578426838 1300851.1036090183 1115946.6239622934 1232558.7748725957 1329888.0697697676 1107056.1881229654 1427068.2230839054 1189050.492404121 1.062236684990809 1.1392150181319725 1.238603060034134 1.0940251166111958 0.9385191218465246 1.0365907778907741 1.1184454136013093 0.931042201483494 1.2001746201698638 1.0 20.181378548995077 3.474905406061806 24.982222558345217 1.0311968692423787 1.1493339634126352 0.25120385600566064 0.08452546989656315 83.98255275974024 946839.2003718927 0.02252123747658605 0.030687743896491055 2984.7324417727723 -3.474905406061806 0.11813709417025642 AGS(ph)ISTLDSLDFAR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 AGS(0.806)IS(0.192)T(0.001)LDSLDFAR;AGS(0.867)IS(0.124)T(0.009)LDSLDFAR;AGS(0.568)IS(0.432)TLDSLDFAR;AGS(0.99)IS(0.01)TLDSLDFAR 331.8 1.9847999999999997e-68 1240199000.0 1039924.0 1043945.0 915342.0 916967.0 942993.0 1014685.0 1090924.0 942182.0 1038747.0 1068293.0 True False 1034325.1647304187 1078692.0782469208 1044214.1973047107 1033054.9281812559 1063077.5689925908 944542.2142615672 1038151.8383856177 1012492.4051432539 782761.7203466834 1000113.626128349 1.034207651719045 1.078569524567689 1.0440955607685143 1.0329375594855454 1.0629567893280172 0.9444349017802003 1.0380338906135322 1.0123773726219747 0.7826727882679884 1.0 19.93173248786352 1.3911884787263367 8.728252115887507 0.8913350248925308 1.0321108775025092 0.47689062430218954 0.058830606377470014 0.21097007802021878 18.914626737889666 0.0361903727922682 0.013314211579256443 24.614356066488625 -1.3911884787263367 0.14077585260997838 AGS(ph)PDVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGSPDVLR 8 0 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 1 AGS(1)PDVLR;AGS(1)PDVLR;AGS(1)PDVLR 120.99 0.0015236 1303810000.0 1423070.0 1919640.0 1857060.0 1671880.0 1771850.0 2241820.0 1993000.0 1972470.0 3075830.0 2137920.0 True False 1415408.3492379407 1983534.0569531156 2118517.9061451163 1883539.8365782807 1997484.594922256 2086848.2600766441 1896590.9760006499 2119665.7273997096 2317832.9105103975 2001476.115234602 0.7071822333848008 0.9910355871124731 1.0584777355171162 0.9410753504582804 0.9980057117434658 1.0426545908753126 0.9475961074750782 1.059051222877698 1.158061738967449 1.0 20.93263296864283 4.734949089406993 4.033921533390943 1.02242953202369 0.680453048796584 0.7212043195662808 0.0589900384132141 0.11818807501251173 4.101175165976949 0.014194701514659536 0.11756848901511245 54318.6652176503 -4.734949089406993 -0.34197648322710605 AGS(ph)PFSPPPSSSSLTGEAAISR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGSPFSPPPSSSSLTGEAAISR 22 0 Q96JY6;Q96JY6-5;Q96JY6-3;Q96JY6-4;C9JS55;C9JSR2;C9K0F0;C9J0X3;Q96JY6-2;C9J760;A0A087WXJ0 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 1 AGS(0.937)PFS(0.063)PPPSSSSLTGEAAISR;AGS(0.998)PFS(0.002)PPPSSSSLTGEAAISR 329.63 1.0773999999999996e-80 891650000.0 303660.0 231110.0 202161.0 205510.0 210210.0 335260.0 331220.0 251910.0 345530.0 286430.0 True False 302025.128299798 238802.35664105456 230623.51158508775 231527.54492858495 236978.99748771498 312084.2653171505 315197.62321672606 270708.8033730612 260378.76136478796 268149.79217493976 1.126329898860254 0.8905558147338072 0.860054783986668 0.8634261583821679 0.8837560363765298 1.1638430251459904 1.1754535428134605 1.0095432152953223 0.9710198141601317 1.0 18.032679609661834 2.753706009769914 24.784250091415167 1.069256510650281 0.9159113727078563 0.3470398501451232 0.09490231976614243 791.4562783718106 1295154.4330988762 0.030143805807827495 0.03185435306480869 567.1605431778784 -2.753706009769914 -0.15334513794242466 AGS(ph)PLCNSNLQDS(ph)EEDIEPSYSLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGSPLCNSNLQDSEEDIEPSYSLFR 25 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 2 AGS(0.972)PLCNS(0.028)NLQDS(1)EEDIEPSYSLFR 80.83 0.012019 38347000.0 17670.0 13522.0 13900.0 11937.0 17116.0 16807.0 15955.0 15603.0 23451.0 17541.0 True False 17574.866683321565 13972.07159577839 15856.999179034136 13448.222976071816 19295.621145519835 15645.171649422398 15183.195695981116 16767.375090428606 17671.815277300513 16421.518362394363 1.0702339634785778 0.8508392030163752 0.9656232042066836 0.8189390700234238 1.1750205260986846 0.9527238166508515 0.924591463524528 1.021061190591624 1.076137716824612 1.0 14.003299906946726 3.262430088884995 24.999990155088284 1.0154941466475242 0.9238121398570763 0.21890124499369412 0.09006208827338373 379.1613463491057 397116.67925941723 0.02402545084265059 0.03251431264272911 1829.9115102319765 -3.262430088884995 -0.09168200679044791 AGS(ph)PLCNSNLQDSEEDIEPSYSLFR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGSPLCNSNLQDSEEDIEPSYSLFR 25 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 AGS(1)PLCNSNLQDSEEDIEPSYSLFR;AGS(1)PLCNSNLQDSEEDIEPSYSLFR;AGS(1)PLCNSNLQDSEEDIEPSYSLFR;AGS(0.998)PLCNS(0.002)NLQDSEEDIEPSYSLFR 260.9 2.9599000000000004e-45 585130000.0 332227.0 321161.0 294753.0 301980.0 296107.0 359736.0 320991.0 310916.0 431569.0 359058.0 True False 330438.3267458901 331850.6497390761 336251.6603609964 340210.63703729305 333814.47128630785 334868.29704745737 305463.43902530073 334118.1307194578 325214.60267832124 336142.6110349805 0.9830301660609853 0.9872317250029995 1.0003244138720768 1.012102083665582 0.9930739523278398 0.9962090078862672 0.9087316781552364 0.9939773172187563 0.9674899640869332 1.0 18.358713911555427 AGSIS(ph)TLDSLDFAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 AGS(0.195)IS(0.803)T(0.002)LDSLDFAR;AGS(0.015)IS(0.985)TLDSLDFAR;AGS(0.041)IS(0.957)T(0.001)LDSLDFAR 329.38 2.3433999999999996e-68 1956300000.0 1525850.0 1514440.0 1395180.0 1406440.0 1419420.0 1551300.0 1636630.0 1494500.0 1576110.0 1645840.0 True False 1517634.9931378728 1564847.2199016882 1591609.216878047 1584495.1597944563 1600174.7234385242 1444062.2823674055 1557459.9543662525 1606027.1789172299 1187698.8092919772 1540801.0821254852 0.984964906076224 1.015606257066637 1.0329751421789461 1.028358026338284 1.038534267662335 0.9372152571280443 1.010811825377087 1.0423325876055118 0.7708320191815968 1.0 20.555249190842822 1.266557019442441 24.999906147058642 0.885415676237411 1.012650033094983 0.42058419448678785 0.05910915145879704 154.3188965243214 137802.2078239893 0.03595978468383243 0.013124775240472224 18.473833258579887 -1.266557019442441 0.127234356857572 AGSISTLDS(ph)LDFAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 AGSIS(0.04)T(0.161)LDS(0.799)LDFAR;AGSIS(0.013)T(0.198)LDS(0.789)LDFAR;AGSIS(0.001)T(0.003)LDS(0.997)LDFAR 119.65 0.00018368 83648000.0 70470.0 100360.0 81353.0 81782.0 89193.0 92902.0 87527.0 72869.0 95054.0 85084.0 True False 70090.5973499531 103700.42193109894 92806.79526704783 92135.59281470272 100551.19986167036 86479.90340778488 83292.98462438984 78306.85480128444 71629.21535834394 79653.86627592267 0.8799396768407673 1.3018881164145693 1.165126058609172 1.156699569303304 1.262351779803869 1.0856962436476927 1.0456866504867595 0.9830891890423479 0.89925597723303 1.0 16.281456769193667 2.094710282289696 1.7388134633367989 0.9558416054965709 1.1614555734135443 0.3661143078521061 0.10836938651637537 0.35898641844242324 2.0729898055044957 0.05995086177009851 0.032515447411707595 124.36846733275836 -2.094710282289696 0.2056139679169734 AGSMKDPLLDDHGDFIR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGSMKDPLLDDHGDFIR 17 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;; 202.5 6.3293e-12 2034420000.0 3629430.0 3944120.0 3648560.0 3563540.0 3593750.0 4423630.0 4348640.0 3765070.0 5338630.0 4403760.0 False True 3609889.552147578 4075397.6499291114 4162245.5341479694 4014683.7986220103 4051392.760674915 4117834.8702049404 4138279.66978197 4046038.642038073 4022996.1704769484 4122708.266551384 0.8756112047596385 0.9885243840787582 1.0095901201444113 0.9737976929374789 0.9827017821136969 0.9988179138490146 1.003776984017259 0.9814030924440248 0.9758139335534785 1.0 21.975160945347486 4.738176428422047 7.280469094416067 0.9903031901796221 0.8741898778276704 0.8986726315856023 0.011573906780244737 0.028944932856852353 13.49031959961687 0.002773615786895585 0.016629299708790225 54723.82285981345 -4.738176428422047 -0.11611331235195166 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGSNEDPILAPSGTPPPTIPPDETFGGR 28 0 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 1 AGSNEDPILAPS(0.013)GT(0.968)PPPT(0.019)IPPDETFGGR;AGSNEDPILAPS(0.065)GT(0.935)PPPTIPPDETFGGR;AGSNEDPILAPS(0.278)GT(0.72)PPPT(0.002)IPPDETFGGR 105.95 0.003363800000000001 669560000.0 616160.0 706040.0 648300.0 680960.0 666640.0 689990.0 643550.0 654020.0 772590.0 730490.0 True False 612842.6630218117 729540.1145898069 739575.0048753832 767169.4661795985 751532.6525151513 642292.615361751 612419.0279002609 702826.293446267 582195.5466756047 683869.5027960457 0.8961397759604193 1.066782641435294 1.0814563331916132 1.1218068111576482 1.0989416101207325 0.93920347776249 0.8955203081821095 1.0277198947645936 0.8513255003992131 1.0 19.38336152815816 2.7281995851756378 24.299944077549693 0.947438199470163 1.0591904055043244 0.3585507615932031 0.07338168711751537 548.1803436335123 1285656.376584944 0.02367602187514382 0.022555984174606466 534.8100812408984 -2.7281995851756378 0.11175220603416147 AGSRLS(ph)AEER ddPTM_BT-474_Trastuzumab_2h_R1 2 AGSRLSAEER 10 1 Q86Y82;B1AJQ6 Q86Y82 STX12 Syntaxin-12 1 AGS(0.001)RLS(0.999)AEER;AGSRLS(1)AEER 106.32 0.0014727 544720000.0 747970.0 934530.0 910060.0 894470.0 976040.0 1091400.0 969510.0 844940.0 1029940.0 971520.0 True False 743943.0126272794 965635.2661146856 1038188.5376166757 1007709.810287925 1100332.9085576755 1015954.0868792529 922611.0974121372 907993.7133183827 776125.0874889307 909516.7618398813 0.8179541530629307 1.0617014513963228 1.1414726821708063 1.107961779890023 1.2097994833341918 1.1170262380036375 1.0143970250155336 0.9983254310581176 0.8533378603368346 1.0 19.79474070054935 1.7229640221756783 2.144491961060817 0.9309745349021071 1.0835079197923032 0.22781554190942732 0.10310959815153828 0.40405730343393415 3.8605303360637095 0.07209060834187907 0.03006186216905149 52.84014761258526 -1.7229640221756783 0.15253338489019608 AGSS(ph)PAQGAQNEPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGSSPAQGAQNEPPR 15 0 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 AGS(0.017)S(0.983)PAQGAQNEPPR 193.7 1.2669e-11 0.0 78651.0 98616.0 99829.0 94585.0 95760.0 106210.0 87237.0 79425.0 110370.0 98797.0 True False 78227.55175494762 101898.37394536921 113884.05547077699 106559.45130198149 107954.46838601191 98867.95269144716 83017.01303229749 85352.09681197787 83170.79238222935 92491.69087563276 0.8457792371872069 1.1017030068396627 1.2312895828005683 1.1520975591771232 1.1671801797976737 1.0689387528268688 0.8975618484899879 0.922808265304015 0.8992244772999493 1.0 16.49703614441125 2.331368950903124 4.656918937421196 0.9226254554388156 1.1104417990670001 0.39926747331804413 0.09860537066541962 0.20212831072016732 7.636159607156435 0.03628693119876996 0.02974619387171063 214.47118477240497 -2.331368950903124 0.18781634362818456 AGSSPCLGSSSAASS(ph)PPPPASR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGSSPCLGSSSAASSPPPPASR 22 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 AGSSPCLGSSSAAS(0.007)S(0.993)PPPPASR;AGSSPCLGSSSAASS(1)PPPPASR;AGSSPCLGSSSAAS(0.169)S(0.831)PPPPASR;AGSSPCLGSSSAASS(1)PPPPASR 450.6 7.401299999999994e-199 1126020000.0 947377.0 1240785.0 1128800.0 1199890.0 1208530.0 1210930.0 1178260.0 1124785.0 1290540.0 1242950.0 True False 942276.4274954792 1282083.77865463 1287725.228294514 1351795.9509725058 1362429.1319814855 1127221.2593226084 1121263.062409698 1208722.1682425018 972503.7093500246 1163623.866856968 0.8097775014194543 1.1018025800017586 1.106650752852597 1.1617121214811486 1.1708501095474304 0.9687161731800107 0.9635957927180631 1.038756768978405 0.8357543507394939 1.0 20.15019336200864 2.694155142658696 23.241702907265527 0.9701529465469911 1.0790302660635984 0.2035199159413229 0.10618430782812609 335.3173999476619 175503.2889251375 0.03461330714489146 0.032633973685229634 494.4873007287642 -2.694155142658696 0.10887731951660728 AGSSS(ph)PEPWARPSCTPQEGGCPRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGSSSPEPWARPSCTPQEGGCPRPK 25 2 Q86VE0 Q86VE0 MYPOP Myb-related transcription factor, partner of profilin 1 AGS(0.002)S(0.114)S(0.884)PEPWARPSCTPQEGGCPRPK;AGS(0.015)S(0.121)S(0.864)PEPWARPSCTPQEGGCPRPK 214.78 9.3561e-34 278390000.0 181214.0 186828.0 190922.0 195182.0 194856.0 229350.0 235400.0 217660.0 264970.0 238760.0 True False 180238.3639587683 193046.45704008918 217802.15807622718 219892.02118753843 219669.75659800283 213495.57433182775 224012.8026846731 233902.89445508484 199671.69391609405 223522.13238727974 0.8063557824622175 0.8636570122980588 0.97440980787915 0.9837594999610522 0.9827651259938672 0.955142884740918 1.0021951754493073 1.0464417637615373 0.89329719515264 1.0 17.770058163583688 4.344980273329289 2.4796269529040935 0.986817144589911 0.8086988370929676 0.7149986999152687 0.037239384867979786 0.15193152991354933 1.7563363041216868 0.009656175077098952 0.039980430788022395 22129.94187952883 -4.344980273329289 -0.17811830749694335 AGSST(ph)PGDAPPAVAEVQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 AGSS(0.035)T(0.965)PGDAPPAVAEVQGR;AGS(0.002)S(0.019)T(0.979)PGDAPPAVAEVQGR 201.9 6.4584999999999995e-15 1106690000.0 1501160.0 1649890.0 1490040.0 1534380.0 1575190.0 1590110.0 1624420.0 1485170.0 1685130.0 1560880.0 True False 1493077.9213545534 1704805.5912704356 1699824.6803401473 1728632.3506764742 1775781.1096173988 1480189.4384163192 1545840.598712985 1596000.92694045 1269852.291085131 1461263.3020634 1.0217719963583765 1.1666655755079443 1.1632569420855796 1.1829711649060999 1.2152369166527888 1.012951900130657 1.057879573469173 1.0922062606285887 0.8690099103234962 1.0 20.478784727175068 1.8447664555507515 0.9710223985936428 0.9601722445856311 1.14559267889031 0.46709241840064797 0.07399502654877113 0.48888152350027747 0.8512875783172342 0.06319497350160197 0.027406264982110184 69.94657529652284 -1.8447664555507515 0.1854204343046788 AGT(ph)PVSELTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AGTPVSELTK 10 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 AGT(1)PVSELTK;AGT(1)PVSELTK;AGT(1)PVSELTK;AGT(1)PVSELTK 192.14 7.9947e-06 1770990000.0 5309610.0 3492270.0 2965380.0 2516970.0 2870960.0 4457160.0 4120700.0 4035060.0 6681980.0 3785720.0 True False 5281023.649713133 3608508.0958282063 3382879.7284549824 2835618.143929252 3236559.738486894 4149047.020226071 3921365.998397333 4336176.666819507 5035295.562944711 3544112.108482041 1.490083690375985 1.018169850550734 0.9545069752051057 0.8000926768492546 0.9132216023135699 1.1706872957817145 1.1064452473194681 1.2234874445539792 1.4207495160477164 1.0 21.75699280972754 2.221914316707921 1.8432471560905643 1.2262901058770896 1.0229185752858436 0.10900430708724895 0.19734105649753045 0.6644130424909591 4.5080851963253945 0.10332284442848272 0.06474349897098473 166.6918308674578 -2.221914316707921 -0.20337153059124602 AGTEDEEEEEEGRR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTEDEEEEEEGRR 14 1 O95456;O95456-2;F8WBH7 O95456 PSMG1 Proteasome assembly chaperone 1 0 ; 280.91 4.3557e-33 1277210000.0 764990.0 792760.0 735090.0 725270.0 745150.0 824100.0 841690.0 759510.0 997320.0 808920.0 False True 760871.3788383794 819146.53736646 838584.2824831792 817089.1076363925 840040.4356499239 767131.9067227347 800974.2391319562 816188.4929136342 751543.8494033249 757294.0330487443 1.0047238531317 1.0816756789548538 1.1073430475969466 1.0789588613908956 1.1092658848347923 1.012990824230299 1.0576793216069094 1.0777696077015029 0.9924069339061472 1.0 19.530494035756103 1.235805177223844 24.999999883414944 0.9962034242730197 1.06826965683161 0.4197196220200965 0.03290357603721661 68.49023464899345 621348.0067815423 0.027035556983933083 0.00792397453551722 17.210963248231682 -1.235805177223844 0.07206623255859024 AGTEKLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTEKLR 7 1 A0A0G2JR78;Q9NY99-2;Q9NY99 A0A0G2JR78 SNTG2 Gamma-2-syntrophin 0 ; 128.75 0.0033989000000000003 1899670000.0 2109600.0 1942780.0 1793530.0 1885280.0 1979210.0 2045900.0 2180600.0 2127800.0 2812800.0 2250800.0 False True 2098242.147998593 2007444.257864688 2046043.4343577747 2123956.2546978854 2231250.6618032423 1904471.7485305702 2075116.0472990551 2286587.2407494676 2119623.1295889704 2107152.0169931734 0.9957716059768223 0.9526812691612233 0.9709994427822068 1.0079748578029462 1.0588940160981613 0.9038131720786712 0.9847965550488226 1.0851553292354965 1.005918468385396 1.0 21.006862968078806 1.8748273130639792 10.367212783141047 1.0389937066080892 0.9812877373027705 0.20041561271981734 0.043148044691814186 0.5474882380808643 43.565344342120774 0.01804227786061204 0.011479831094676676 74.95960908979397 -1.8748273130639792 -0.05770596930531868 AGTFIAPPVYSNITPYQSHLRS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTFIAPPVYSNITPYQSHLRSPVR 25 1 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 AGTFIAPPVYSNIT(0.12)PY(0.003)QS(0.354)HLRS(0.523)PVR;AGTFIAPPVYSNIT(0.009)PY(0.003)QS(0.365)HLRS(0.622)PVR 135.91 2.127e-05 2413400000.0 559350.0 886410.0 830870.0 1061560.0 878970.0 762960.0 801270.0 680680.0 878090.0 770440.0 True False 556338.5217496278 915913.6210038406 947849.2739484952 1195953.3871558004 990901.6194366425 710218.3710146552 762509.5089513499 731475.7980230037 661696.4853031776 721269.8595931308 0.7713319977954701 1.26986260249459 1.3141395849858166 1.6581219515126269 1.3738292350045118 0.9846777340942685 1.0571764490221212 1.0141499582911035 0.9174048748916827 1.0 19.46017961220474 2.731824184187021 24.521872464165227 1.002298128283909 1.3002211275987852 0.31673342974225127 0.2061613363554282 512.9715438464355 1867307.5004101836 0.06927001303298957 0.06672700584744179 539.292256164101 -2.731824184187021 0.2979229993148762 AGTFQAFEQFGQQLLAHGHYASPEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTFQAFEQFGQQLLAHGHYASPEIK 26 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 229.04 5.3542e-35 480100000.0 446250.0 383320.0 400490.0 406890.0 404500.0 540340.0 534460.0 286940.0 684490.0 502060.0 False True 443847.43958303606 396078.5744781667 456875.51087851694 458402.232280628 456010.67734066205 502987.56762354414 508606.1279645298 308352.91985179664 515806.61119608657 470018.1009648082 0.9443198861319351 0.8426879170507147 0.9720381192568682 0.9752863375679868 0.9701981187631007 1.0701450999250015 1.08209902325147 0.6560447761880643 1.0974186103413637 1.0 18.842356792225626 5.764569719557433 20.34127690655623 0.9453770982458042 0.8066586716108296 0.0 0.1252361991333285 0.0 0.0 0.028356854542223153 0.0 581526.7803413403 -5.764569719557433 -0.13871842663497458 AGTGVDNVDLEAATR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTGVDNVDLEAATR 15 0 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 ; 246.68 7.8765e-18 128680000.0 303620.0 369190.0 328010.0 345100.0 334400.0 369320.0 325330.0 316590.0 370520.0 357780.0 False True 301985.3436553534 381478.2659699318 374190.9568859703 388789.6246161 376983.85785591486 343789.7776857667 309592.545018711 340215.55341144605 279210.3107136325 334946.17408913164 0.901593650014324 1.1389240883474538 1.1171674311658069 1.160752546803655 1.1255057887468112 1.0264030590010014 0.9243053629755035 1.0157320182463472 0.8335975518243495 1.0 18.353569747279213 2.4706795830812256 3.901425192325429 0.9521792312085674 1.0964430312230111 0.40968748207558414 0.0815707596155706 0.21761503966501242 7.4925154603392095 0.028278322316427844 0.0244698756488857 295.5830887624499 -2.4706795830812256 0.14426380001444372 AGTQIENIDEDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTQIENIDEDFR 13 0 O43707;F5GXS2;O43707-3;K7EP19 O43707 ACTN4 Alpha-actinin-4 0 ; 186.76 1.7522e-05 146615000.0 206149.0 181825.0 175195.0 155435.0 155712.0 171254.0 169312.0 172039.0 199424.0 167279.0 False True 205039.11668930695 187876.93520946646 199860.93317776162 175113.05506289052 175541.00022266773 159415.61406855367 161121.7317253499 184877.42377634076 150278.62734469248 156603.11100524294 1.309291465368414 1.1997011681535272 1.2762258162998463 1.1181965284012005 1.1209292018265893 1.0179594328954076 1.0288539652316082 1.1805475803743848 0.9596145720225269 1.0 17.256753347265352 3.5472889370010585 1.5663861044350678 1.0605157534334566 1.2648961729846253 0.680889029113394 0.06418275729232326 0.25030885023388627 1.2214926479971506 0.02019607034504663 0.03894366043219774 3526.053821005077 -3.5472889370010585 0.2043804195511687 AGTQIENIDEDFRDGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTQIENIDEDFRDGLK 17 1 O43707;F5GXS2;O43707-3;K7EP19 O43707 ACTN4 Alpha-actinin-4 0 ; 269.16 3.2320999999999997e-28 3215300000.0 1601280.0 1517780.0 1448360.0 1193950.0 1227630.0 1649170.0 1529940.0 1406050.0 2234100.0 1610910.0 False True 1592658.8863989331 1568298.3897826143 1652276.4986292003 1345103.9475815473 1383961.403766915 1535166.759628604 1455930.9572616327 1510976.5907772307 1683535.9904062569 1508100.3446305613 1.0560695726046572 1.03991647198171 1.0956011677286353 0.8919193953974308 0.9176852247891657 1.0179473568150885 0.9654072173946034 1.0019071981230625 1.116328894426897 1.0 20.52430099387545 3.7750318495999395 24.99972932413859 0.9854652306211905 1.061467812400772 0.26470286745836535 0.05836776615892182 836.1255604508236 573131.5599983884 0.015463465886892274 0.027876219899954768 5957.058288564384 -3.7750318495999395 0.07600258177958141 AGTQIENIEEDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGTQIENIEEDFR 13 0 P12814-3;P12814;P12814-2;P12814-4;P35609-2;P35609;G3V2N5;A0A494C1A0;Q08043;A0A494C166;A0A494C033;A0A087WSZ2;G3V5M4;A0A494C0Q3;G3V380 P12814-3 ACTN1;ACTN2;ACTN3 Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 ; 146.5 9.6264e-05 114203000.0 106428.0 108567.0 88993.0 83268.0 97741.0 111227.0 104914.0 91059.0 105628.0 102097.0 False True 105855.00347326238 112180.58696486258 101522.44085897738 93809.72026233964 110187.73699370507 103538.13929019497 99838.90900959975 97854.28496823282 79597.3947426848 95581.08205036075 1.1074890679463996 1.1736693554667619 1.0621604053978608 0.981467443661207 1.1528195185700891 1.0832492902271365 1.0445467541055413 1.023782979530137 0.8327735262585299 1.0 16.54443747962863 1.5222829110052771 2.850045667202987 0.9173426158176782 1.087770737585754 0.5158414741537787 0.06429449352898993 0.1817204231217324 3.131352819067765 0.04645701696607096 0.01686225228726355 33.28763271953372 -1.5222829110052771 0.17042812176807576 AGTQIENIEEDFRDGLK ddPTM_BT-474_Trastuzumab_2h_R1 6 AGTQIENIEEDFRDGLK 17 1 P12814-3;P12814;P12814-2;P12814-4;G3V2N5;G3V5M4;G3V380 P12814-3 ACTN1 Alpha-actinin-1 0 ;;;;; 296.17 3.4701999999999997e-46 2055129000.0 797103.0 780464.0 701104.0 687879.0 657632.0 913992.0 903862.0 786875.0 1200475.0 884382.0 False True 792811.4860144691 806441.2724395491 799813.3490947876 774964.4108701776 741377.5371097514 850809.8843457414 860138.7419718514 845595.6081702877 904634.0217908544 827939.9836024772 0.9575712028845866 0.9740334908462998 0.9660281722531301 0.9360152018485737 0.8954484042235995 1.0276226552602934 1.0388902082361975 1.0213247637721137 1.0926323643106004 1.0 19.659166666681656 2.618106746296079 6.952133823381138 1.0372723606835434 0.948143454566951 0.7002737545729151 0.0295568156425945 0.14709699178795843 7.808960292452523 0.009709592400198256 0.009136167393862879 415.05604773240225 -2.618106746296079 -0.08912890611659241 AGVLAGHDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGVLAGHDNR 10 0 P62879;E7EP32;P62879-2;Q9HAV0;P62873-2;P62873;B3KVK2 P62879;P62873-2 GNB2;GNB4;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 0 ; 129.85 0.00029216 1457360000.0 721580.0 915550.0 1076380.0 849140.0 839740.0 962680.0 935620.0 678440.0 1329680.0 908190.0 False True 717695.0934550754 946023.5282883367 1227924.9479373202 956641.0369357152 946675.911471069 896132.1975049651 890360.4861845104 729068.6378485151 1001998.1807991548 850228.536659423 0.8441202129899379 1.1126696970267493 1.4442292807083132 1.125157526109851 1.1134370003512126 1.053989790822476 1.0472013673908984 0.8574972568117398 1.1785045286012628 1.0 19.69749115614517 2.587350392811558 1.8616384501461978 0.9938605024275349 1.1484594752904513 0.08820621034176235 0.15392100219143284 0.6692210807564652 4.639806948832398 0.06428490356016453 0.05634891862603469 386.6788272956022 -2.587350392811558 0.15459897286291646 AGVLAHLEEER ddPTM_BT-474_Trastuzumab_2h_R1 6 AGVLAHLEEER 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ;;;;; 202.56 3.9611e-08 15814150000.0 5591290.0 6668800.0 6457850.0 6290630.0 4949050.0 5889910.0 6713260.0 5127550.0 7152780.0 6222280.0 False True 5561187.115890713 6890766.976625279 7367059.147361559 7087023.113007178 5579282.182182461 5482754.385056786 6388513.966656357 5510193.818171328 5390073.211341506 5825168.763238072 0.9546825752048053 1.1829300157125173 1.2646945430755874 1.2166210801878417 0.9577889343554522 0.9412181188050343 1.0967088210342484 0.9459286146258091 0.9253076486569108 1.0 22.47386841657774 3.232840972147688 24.99747407788316 0.979634493738502 1.1646006646261 0.49148931095279136 0.08791370511256091 114.9802348379351 502516.2833164227 0.025822906613782223 0.03167446387496211 1709.3892645841515 -3.232840972147688 0.18496617088759804 AGVLT(ph)PPDLGPHPPPPAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AGVLTPPDLGPHPPPPAPR 19 0 I3L2J0 I3L2J0 CIC 1 AGVLT(1)PPDLGPHPPPPAPR 123.6 0.00011375 494660000.0 298580.0 355300.0 296880.0 310430.0 317560.0 330350.0 315620.0 255960.0 339030.0 316910.0 True False 296972.47845535685 367125.9457166147 338678.12347278127 349730.4061708949 357999.38367441413 307513.68206025433 300352.2548145138 275061.0349385442 255480.59926925067 296684.53247969906 1.0009705459642642 1.237428667575502 1.1415429063392635 1.1787955484158095 1.2066668278330641 1.0365005532645901 1.012362364509399 0.9271161952380026 0.8611187011804607 1.0 18.178570188931054 2.2984522770276143 1.7258786664444685 0.9268470319048772 1.1576866983056933 0.6553906896323695 0.0696745741033007 0.20059896906806415 1.205745948381937 0.033283204535384275 0.022041899611215818 198.8164326560409 -2.2984522770276143 0.2308396664008161 AGVNFSEFTGVWK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGVNFSEFTGVWK 13 0 O75340-2;O75340;A0A024QZ42 O75340-2 PDCD6 Programmed cell death protein 6 0 ; 210.91 6.073500000000001e-08 515340000.0 495110.0 462800.0 458930.0 501750.0 436730.0 522180.0 595960.0 499390.0 654570.0 563180.0 False True 492444.3827718928 478204.0182314922 523543.3549089312 565271.4985544133 492344.97679848585 486082.92567950225 567131.1380117155 536657.0176510379 493259.99428862764 527237.3702373444 0.9340088745041176 0.9069994754283464 0.9929936390382376 1.072138528989224 0.9338203332909593 0.9219432330084724 1.0756656679256484 1.0178660465768068 0.9355558276655895 1.0 19.00809310568065 4.228080687632231 20.067774453932035 0.9978673525399462 0.9205042158846644 0.24444428667705353 0.051098931647838526 22.493115728332203 43077.18786210343 0.01310029112231299 0.029043747775326895 16907.55028076311 -4.228080687632231 -0.07736313665528183 AGVSVWVQAVEMDR ddPTM_BT-474_Trastuzumab_2h_R1 3 AGVSVWVQAVEMDR 14 0 Q9Y365;F5H0V7;F5H8G1;F5H1Z6;F5H3G8;F5H5A8 Q9Y365 STARD10 PCTP-like protein 0 ;; 183.79 3.1819e-06 478620000.0 371731.0 405560.0 456346.0 437910.0 469120.0 461583.0 478950.0 383540.0 479914.0 450672.0 False True 369729.64159919706 419058.819433803 520595.550169461 493349.36110007606 528859.651307914 429674.8536595078 455781.35873332253 412161.70237665705 361645.62521813164 421909.72712028935 0.8763240518836974 0.9932428491138495 1.233902696964926 1.1693244535208802 1.2534900650847818 1.0184047108660392 1.0802817034919323 0.9768954728534783 0.857163516201711 1.0 18.686574823682708 1.6926176094665768 2.310489836174715 0.9241587732819782 1.1015877309994662 0.2620174342102728 0.11188532167897823 0.36212659429706684 4.174766834432213 0.08031952837629353 0.03320587093010309 49.273976207117364 -1.6926176094665768 0.177428957717488 AGVVGPELHEQLLSAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGVVGPELHEQLLSAEK 17 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 227.89 1.6091999999999998e-15 825700000.0 1207310.0 1224150.0 1118920.0 1032620.0 986820.0 1344990.0 1281840.0 1178340.0 1565820.0 1363000.0 False True 1200809.9771047505 1264895.0927356987 1276454.210173012 1163349.5861230853 1112485.6776596091 1252014.0070659022 1219832.5020956711 1266273.7142892792 1179944.641913039 1276012.173076992 0.9410646719843605 0.9912876377076518 1.000346420751578 0.9117072788716187 0.8718456619241705 0.9811928392867756 0.9559724647094483 0.9923680518155017 0.9247126844156239 1.0 20.28321066171382 AGVVNGTGAPGQS(ph)PGAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AGVVNGTGAPGQSPGAGR 18 0 E7ESY4;Q13330-3;Q13330;H0Y4T7;Q13330-2 E7ESY4 MTA1 Metastasis-associated protein MTA1 1 AGVVNGT(0.002)GAPGQS(0.998)PGAGR;AGVVNGTGAPGQS(1)PGAGR 278.32 3.7574e-39 158512000.0 119754.0 134585.0 118606.0 122829.0 123684.0 143302.0 130379.0 126604.0 149708.0 132385.0 True False 119109.25776992027 139064.58036664958 135304.69385816704 138379.1388060589 139434.42426749668 133395.87003662347 124072.06967385294 136051.83336208566 112814.46938442322 123936.0759594994 0.9610539695386477 1.12206699534439 1.0917296905735723 1.116536389705281 1.1250511458266754 1.0763280102576056 1.0010972891734766 1.0977581169065376 0.9102633636818502 1.0 16.91923667024568 1.2454579859352646 24.999884907531886 0.9551316693692675 1.0767143880581764 0.43077408438501885 0.05456112748012689 125.70975305389732 455654.0055578333 0.037000452836369414 0.012850185162522267 17.597784129149186 -1.2454579859352646 0.12158271868890891 AGVYPEKDQAENEDGAQENTFSMDPQLER ddPTM_BT-474_Trastuzumab_2h_R1 1 AGVYPEKDQAENEDGAQENTFSMDPQLER 29 1 P50570-2;P50570-5;P50570;P50570-3;P50570-4 P50570-2 DNM2 Dynamin-2 0 256.01 5.406199999999998e-58 329030000.0 233670.0 215630.0 225070.0 222200.0 223150.0 282790.0 254940.0 229160.0 331280.0 278410.0 False True 232411.9466831775 222807.11419891217 256757.89965648996 250330.49721732052 251566.82978632578 263241.39291605673 242607.57823462415 246261.08285090182 249640.48292457082 260641.63544120715 0.8916915606739376 0.8548408385396687 0.9850993269814974 0.9604394048309579 0.9651828241504095 1.0099744519729121 0.9308089930603166 0.9448263414785504 0.9577920369552091 1.0 17.991708035881867 4.239114571524336 24.999979254736143 0.9652082090373136 0.8732661789820451 0.7101157958916082 0.024424589329924244 7.444193308505683 335876.81996029255 0.006106232562751511 0.014808243524871983 17342.614541110226 -4.239114571524336 -0.09194203005526858 AGWGS(ph)PCHLSGESVILLGPTVGTESK ddPTM_BT-474_Trastuzumab_2h_R1 2 AGWGSPCHLSGESVILLGPTVGTESK 26 0 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4;A8MXE8;Q7Z5J4-4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 AGWGS(1)PCHLSGESVILLGPTVGTESK;AGWGS(0.965)PCHLS(0.034)GES(0.001)VILLGPTVGTESK 206.88 1.8271e-25 431900000.0 310400.0 440590.0 486830.0 444200.0 389850.0 587350.0 611580.0 531050.0 562790.0 548930.0 True False 308728.8408886824 455254.77180772036 555371.432397783 500435.6744551482 439495.0866780151 546747.8769731801 581995.5389375208 570679.6476172596 424097.94549963565 513896.81743738294 0.600760367476493 0.8858875096325967 1.0807061136654221 0.973805747524648 0.8552204873920367 1.0639253998489686 1.1325143865255316 1.1104946134187639 0.8252589451992685 1.0 18.971119191998206 4.662159687230731 2.683776250406891 1.016246210813706 0.5540482876555044 0.6099861675846929 0.09729959488606357 0.2514454646878005 2.6659753198906144 0.02529181640131724 0.23761612149176228 45936.68879777203 -4.662159687230731 -0.46219792315820163 AGYTDKVVIGMDVAASEFFR ddPTM_BT-474_Trastuzumab_2h_R1 4 AGYTDKVVIGMDVAASEFFR 20 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ;;; 146.99 1.159e-07 897937000.0 1353468.0 1599778.0 1500162.0 1413007.0 1419871.0 1732087.0 1636491.0 1353427.0 2014794.0 1783682.0 False True 1346181.0786724316 1653025.6436437778 1711371.769958143 1591893.5413211274 1600683.1556152364 1612351.9025842252 1557327.6783272852 1454426.5953030528 1518275.0155564116 1669845.887673011 0.806170850022802 0.9899270680286114 1.0248680926735099 0.9533176403119973 0.9585813681559827 0.9655692866550064 0.9326176085012708 0.8709945067624458 0.9092306222774733 1.0 20.671283529898073 1.9995353836706253 11.225322174898983 0.9097556999472997 0.9550195625058623 0.0027622231656946328 0.06166597708407295 0.2005598292915143 973.4542403626441 0.023334520964211552 0.016570768202874498 99.89307534179596 -1.9995353836706253 0.04526386255856263 AHAASVFLTLLHFDSPPIPHVPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHAASVFLTLLHFDSPPIPHVPHR 24 0 Q9BTW9-4;Q9BTW9;J3KR97;A0A0J9YVR1;A0A0J9YWI5;A0A0J9YXU4;I3L120 Q9BTW9-4 TBCD Tubulin-specific chaperone D 0 ; 117.31 0.00022392 143686000.0 14621.8 12084.3 10044.7 14681.099999999999 11184.8 11709.2 10605.1 5161.4 16442.9 6759.0 False True 14543.077853434694 12486.518620386392 11458.906449902464 16539.72575471291 12609.117982496506 10899.770564491986 10092.090797583794 5546.56987705814 12390.76761857169 6327.634833328969 2.2983434152731568 1.973331102265463 1.8109304268865234 2.6138875251768217 1.9927063293984126 1.7225663066207024 1.5949230736936102 0.8765628901091452 1.9581989076403303 1.0 12.627450629203107 2.396070777581257 1.8061012824984484 1.2708706283564064 2.139022469422335 0.5472872276290103 0.3391910918691174 0.25459451594579235 1.6923115474048176 0.15153176538967686 0.11193384400563391 248.92629639061346 -2.396070777581257 0.8681518410659286 AHALSDETWGLVECHPHLALER ddPTM_BT-474_Trastuzumab_2h_R1 2 AHALSDETWGLVECHPHLALER 22 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ; 213.15 4.331800000000001e-24 741920000.0 173314.0 253880.0 253380.0 257790.0 226951.0 244180.0 218199.0 22445.5 238580.0 148986.0 False True 172380.89668099568 262330.24232629914 289053.7015815592 290426.1875681959 255851.8646060335 227300.4113378928 207643.88076887425 24120.497185939563 179785.1558082109 139477.58592666796 1.2359039306260078 1.8808057264786793 2.0724025273389284 2.0822427176284153 1.8343582799070721 1.62965547351385 1.4887258005601385 0.17293457601582815 1.2889895864897973 1.0 17.089673773763263 1.9457968026301422 6.009955205307488 0.7438340401899068 1.8029740099400229 0.6072422889590652 0.3464438862402812 0.13013246451734842 10.457964645379674 0.15014820930855305 0.09280546392075952 88.26668223133835 -1.9457968026301422 1.059139969750116 AHAS(ph)PFSGALTPSAPPGPEMNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHASPFSGALTPSAPPGPEMNR 22 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 AHAS(0.998)PFS(0.002)GALTPSAPPGPEMNR 158.35 1.3443e-11 248650000.0 87303.0 106410.0 102520.0 118670.0 94993.0 126190.0 125730.0 101430.0 110900.0 121490.0 True False 86832.97034827524 109951.79252379654 116953.92488018572 133693.60983249088 107089.79548237707 117466.78231930805 119647.95956475753 108999.22165110393 83570.18098386552 113736.40418717793 0.7634580235662518 0.9667247114903247 1.0282892774393733 1.1754689344008893 0.9415612903159623 1.0327984532198764 1.0519759299568752 0.9583494610197282 0.734770732212816 1.0 16.795334573295104 -0.2069443043853476 8.279841746613089 1.0000093958827048 0.9744130737820511 0.0 0.12493111262622955 0.0 0.0 0.1194466269748446 0.028153839974590877 0.6209486619972409 0.2069443043853476 -0.025596322100653657 AHDGGIYAISWSPDSTHLLSASGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 AHDGGIYAISWSPDSTHLLSASGDK 25 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ;;; 247.84 2.7793000000000004e-39 4853000000.0 1839430.0 2266140.0 2203880.0 2117720.0 2153150.0 2646660.0 2647480.0 1229390.0 2978790.0 2397390.0 False True 1829526.7132598846 2341567.0999894417 2514167.1475316365 2385823.134865275 2427340.88978009 2463702.623767497 2519411.2780442536 1321133.3245159287 2244707.118241012 2244386.5176911554 0.8151567026618725 1.0432993967537543 1.120202392820471 1.0630179410093847 1.081516428051414 1.0977176187557731 1.1225389469172278 0.5886389506006321 1.0001428455158368 1.0 21.097889720822362 1.7690902178612575 24.999999945870083 0.8210672170956146 1.0552348283399309 0.26425838177044647 0.1368190980061762 25.189628144329962 20638.236378917343 0.060573144962583966 0.033597904053183546 58.761140689762385 -1.7690902178612575 0.2341676112443163 AHEAQDAGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 AHEAQDAGYR 10 0 P16298-3;P16298;P16298-4;G3V111;Q5F2F8;P48454-2;P48454;P16298-2;P48454-3;Q08209-3;Q08209-2;Q08209;E7ETC2;Q08209-5;E5RJH4;H0YB04;H0YC26 P16298-3;Q08209-3 PPP3CB;PPP3CC;PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 0 ;; 136.49 0.00011634 1105737000.0 400540.0 493020.0 449490.0 471890.0 430990.0 449360.0 433680.0 418914.0 476930.0 505440.0 False True 398383.53714417754 509429.872663116 512774.28496288165 531631.2256160288 485874.0218221307 418296.80087966024 412701.24158151663 450175.48988218926 359396.99203458044 473182.3864710449 0.8419238512136704 1.076603625216065 1.0836715389748757 1.1235228546457328 1.026821867664473 0.8840075472785096 0.872182171993781 0.9513783749212662 0.7595316358136943 1.0 18.852036846880758 2.7674603723454956 5.978446662364703 0.8936066826573108 1.0419679333237055 0.35878886533133236 0.0910710774583504 0.19630717240459583 23.398631016433605 0.027763853156212277 0.02882894497195862 585.4103175064148 -2.7674603723454956 0.14836125066639472 AHEEQLK ddPTM_BT-474_Trastuzumab_2h_R1 3 AHEEQLK 7 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 158.36 0.0014236 1306920000.0 2304360.0 2216360.0 2094260.0 2000930.0 1867160.0 2170450.0 2466630.0 1455960.0 3151980.0 2198750.0 False True 2291953.5817984636 2290130.20278209 2389113.604365758 2254247.5328400237 2104931.7584756245 2020411.9001897334 2347309.6834583445 1564611.1284150758 2375216.7633681176 2058423.8925554191 1.1134507280485995 1.1125649148674719 1.1606519011979628 1.095132805732011 1.0225939205663166 0.9815334477494352 1.1403431975054903 0.7601015194555957 1.153900696527292 1.0 20.973108677267934 3.1143956239310744 1.3416856328067264 0.9773978051369939 1.1311739491049178 0.19641318786688466 0.10337984852613466 0.5567557980687714 2.1031241499702262 0.038610219646374004 0.05157895320402779 1301.354517240521 -3.1143956239310744 0.15377614396792383 AHEILPNLVCCSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHEILPNLVCCSAK 14 0 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 165.86 3.8966e-06 1025390000.0 997860.0 973120.0 885710.0 897190.0 845940.0 1093950.0 981830.0 656180.0 1383070.0 1070130.0 False True 992487.6326326686 1005509.7109365376 1010410.2692706714 1010774.1620090357 953665.4447207896 1018327.8113813072 934335.1319451681 705147.483614526 1042230.9306885019 1001833.3872156139 0.9906713484475499 1.003669595930658 1.0085611860859371 1.0089244128889245 0.9519202063841204 1.016464238840688 0.932625268700574 0.7038570411137283 1.0403236146732588 1.0 19.93421116625599 1.9984334138237407 21.77467788508528 0.8659268883307185 0.9942833433407647 0.08801647323606832 0.08801275263491255 13.15912707904772 182910.20388714553 0.03235630997262628 0.02345996803000398 99.63993001465884 -1.9984334138237407 0.12835645501004622 AHFLDADPGFVHSDGTISHHDMYDYLHLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHFLDADPGFVHSDGTISHHDMYDYLHLSR 30 0 M0R1K3;Q15102 M0R1K3 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 ; 204.25 4.9432999999999997e-26 1484640000.0 686480.0 1306800.0 1302060.0 1402550.0 1248950.0 1293530.0 1365980.0 660283.0 1192770.0 885780.0 False True 682784.0679550989 1350296.048022717 1485378.7302915964 1580112.6861933095 1407996.3793933752 1204111.3157420943 1299902.328849658 709556.6703091377 898827.8157991449 829248.7620455886 0.8233766502958763 1.6283365255702167 1.7912341848150224 1.9054748810182023 1.6979179756869744 1.4520507848233573 1.5675661976788031 0.8556620193906653 1.0839061291836227 1.0 19.661445427706337 1.7631941927345287 8.123229637566057 0.9815179984189404 1.580273754938144 0.4654854927248717 0.2798500556103665 0.14046685665459246 29.936202122007415 0.13583547894958817 0.07432519109283778 57.968784317648534 -1.7631941927345287 0.5987557565192037 AHFNAMFQPS(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 3 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 AHFNAMFQPS(0.497)S(0.497)PT(0.006)R;AHFNAMFQPS(0.599)S(0.396)PT(0.005)R;AHFNAMFQPS(0.911)S(0.088)PT(0.002)R 106.31 0.0024886999999999995 725370000.0 208048.0 274837.0 258542.0 275180.0 235002.0 232025.0 229127.0 209366.0 309896.0 263814.0 True False 206927.89268430596 283984.78340252495 294942.46631265065 310017.7597851592 264928.1117340182 215985.65787810046 218043.25165985987 224989.9540590062 233526.2831936516 246977.1646574714 0.8378422068748375 1.1498422690064436 1.1942094594927493 1.2552486794279858 1.07268261866008 0.8745167116063035 0.8828478210212692 0.9109747225863618 0.9455379549665062 1.0 17.914018131799857 2.850746119245173 4.815731108701562 0.9140967710577306 1.122774397540305 0.40688613598592194 0.10774567290362824 0.2105273631809233 7.552714139277259 0.0338859273083404 0.03608904611436992 709.1630827637856 -2.850746119245173 0.20867762648257449 AHFNAMFQPSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 7 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 AHFNAMFQPS(0.006)S(0.968)PT(0.026)R;AHFNAMFQPS(0.001)S(0.93)PT(0.069)R;AHFNAMFQPS(0.364)S(0.594)PT(0.042)R;AHFNAMFQPS(0.219)S(0.762)PT(0.018)R;AHFNAMFQPS(0.062)S(0.904)PT(0.034)R;AHFNAMFQPS(0.334)S(0.536)PT(0.13)R;AHFNAMFQPS(0.019)S(0.963)PT(0.019)R 178.0 1.3094e-06 7728890000.0 1382082.0 1693820.0 1604443.0 1570760.0 1413640.0 1490981.0 1565190.0 1060554.0 1789310.0 1461700.0 True False 1374641.0240757472 1750197.7747641867 1830334.6283314426 1769618.054946348 1593658.674699268 1387912.9928617503 1489475.780093558 1139697.9248640905 1348358.5260256121 1368413.0545756698 1.0045512350815804 1.2789981569613893 1.337560046077615 1.2931899831188673 1.1646035306155746 1.0142500381890374 1.088469431881756 0.8328610437127835 0.9853446819416113 1.0 20.384072341829487 2.6081348922626875 1.5383189397050383 0.9432555462008543 1.239843880487017 0.5652761166156919 0.10237273693628081 0.26332404471028076 1.257027307958758 0.04569487166139385 0.03936616016462799 405.6345063321374 -2.6081348922626875 0.2965883342861628 AHFNLDESGVLSLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 AHFNLDESGVLSLDR 15 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ;; 206.95 3.6371e-09 951652000.0 319183.0 422232.0 383670.0 380378.0 384360.0 370290.0 385241.0 296386.0 442812.0 362956.0 False True 317464.5541925653 436285.7368753665 437687.4010805777 428533.8157989652 433305.96771979483 344692.7238689011 366605.4210664658 318503.8283376131 333686.9159768024 339791.8373377351 0.9342912904556396 1.2839794513419154 1.288104518666055 1.2611657159174936 1.2752100554114008 1.0144232026571456 1.0789117947588582 0.9373498517006373 0.9820333489798794 1.0 18.374291670179026 2.7235211099358496 18.896477649190704 0.9999936136259121 1.22008337882574 0.49905930035997703 0.10285743490449656 26.175234181029353 32886.94666492373 0.033085916993576076 0.03144486959185717 529.0797137863354 -2.7235211099358496 0.2200897651998278 AHFPLDVQWNDLDYMDSR ddPTM_BT-474_Trastuzumab_2h_R1 6 AHFPLDVQWNDLDYMDSR 18 0 P10253 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase 0 ;;;;; 284.57 1.4909999999999998e-39 1417060000.0 499881.0 669476.0 607079.0 623384.0 620340.0 610661.0 633615.0 408389.0 640498.0 557355.0 False True 497189.6962380008 691759.1039532123 692550.4463747377 702304.3504829977 699336.6219567528 568447.4424113721 602964.6218056462 438865.06093732227 482655.85013348854 521784.1267243774 0.9528647399820805 1.325757278773298 1.3272738876178278 1.3459672583217095 1.3402796024996064 1.0894303090052482 1.1555825310189072 0.8410854958206585 0.9250106038362534 1.0 18.993093530810754 2.1037196038592683 1.7119754809589465 0.910456663663717 1.263182391887897 0.5377685731515618 0.12612858962780765 0.2566966103731888 1.4396691916955815 0.07283507785784168 0.039651301873330255 126.97540416186271 -2.1037196038592683 0.35272572822418 AHGCFQDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AHGCFQDGR 9 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 0 ;;; 152.11 8.1248e-05 184963000.0 190407.0 245352.0 228354.0 224947.0 197860.0 201915.0 217626.0 144890.0 239697.0 205153.0 False True 189381.86986820665 253518.3930015839 260504.25831145069 253425.26713566424 223056.29819189967 187957.09130678445 207098.59896794654 155702.42753651206 180626.88612524408 192059.95989968022 0.9860559690167985 1.3199960737990657 1.356369429877635 1.3195111946708586 1.1613888616263897 0.9786375640449012 1.0783017921909468 0.8106969699350193 0.9404713310342872 1.0 17.551197255932927 2.7320411917059113 1.824215365610906 0.9305462777065546 1.2595449187872643 0.5765164797155227 0.11516175884831249 0.23351859973815553 1.5419743273810393 0.04449074784572341 0.0434015722432453 539.5617961260581 -2.7320411917059113 0.32899864108070964 AHGGYSVFAGVGER ddPTM_BT-474_Trastuzumab_2h_R1 2 AHGGYSVFAGVGER 14 0 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta 0 ; 142.38 9.4152e-06 205620000.0 199105.0 282460.0 283300.0 269180.0 287390.0 355860.0 269440.0 182204.0 315590.0 280060.0 False True 198033.04080264503 291861.5103493242 323186.1775122569 303258.160400353 323987.4130060145 331260.2358043349 256406.15783924508 195800.9876931652 237817.07318934248 262186.3310285709 0.7553141310828483 1.1131835485257222 1.232658377896286 1.156651299137736 1.2357143552640395 1.2634534931885406 0.9779539491374326 0.7468008989066193 0.9070536677345973 1.0 18.00023294767254 2.016793941171288 7.332838211483722 0.8575436604545432 1.1360220426631638 0.35280455828508284 0.14712168832591754 0.14612868733181145 38.55474516124929 0.05758566340926641 0.04127700286122642 103.94268740358906 -2.016793941171288 0.27847838220862053 AHGPGLEGGLVGKPAEFTIDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AHGPGLEGGLVGKPAEFTIDTK 22 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 244.72 4.667899999999998e-31 387680000.0 837660.0 593140.0 572940.0 536000.0 503140.0 796890.0 759010.0 686690.0 1049300.0 774160.0 False True 833150.131632776 612882.3063392984 653604.9719162467 603857.5450426816 567211.8966555771 741802.869977285 722293.786600228 737934.2947411657 790714.0748996382 724752.4460082784 1.1495651187126306 0.8456436535190359 0.9018320331529878 0.8331914550527563 0.78262846821644 1.0235258591577239 0.9966075872919202 1.0181880707067483 1.0910126336994885 1.0 19.467128771765303 2.679660292682807 20.424488695077255 1.023800147409008 0.8955139609691479 0.2964496998456435 0.0946314747407252 46.567194300606566 16147.091048537042 0.030336627754370172 0.028601256313891304 478.2558518545605 -2.679660292682807 -0.12828618643986 AHGVDK ddPTM_BT-474_Trastuzumab_2h_R1 7 AHGVDK 6 0 P30043;M0R192;A0A2R8Y7Y9;M0QZL1 P30043 BLVRB Flavin reductase (NADPH) 0 ;;;;;; 106.76 0.031846 3042645000.0 8588620.0 7093040.0 6011580.0 5651480.0 5747840.0 4572730.0 6565180.0 5592450.0 9774910.0 8091860.0 False True 8542379.824205382 7329127.548566768 6857958.210409925 6366956.788540698 6479793.353883201 4256627.938148583 6247597.161976896 6009787.016885686 7366014.407583374 7575430.56701012 1.1276428116714823 0.9674865981194568 0.9052895607380153 0.8404745753024063 0.8553696448755987 0.5618991422989961 0.8247184244792973 0.793326130274023 0.972355873692682 1.0 22.85289645912916 4.614604479527357 1.1011338591064301 0.8128890419300894 1.2334977910833096 0.3842186946263483 0.11269362963199794 1.3208587128299611 1.5408838978506791 0.033383700943162814 0.6154550046482774 41172.23846795899 -4.614604479527357 0.4206087491532202 AHHGEAGHHLPEPS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 3 AHHGEAGHHLPEPSSR 16 0 O76061 O76061 STC2 Stanniocalcin-2 1 AHHGEAGHHLPEPS(0.5)S(0.5)R;AHHGEAGHHLPEPS(0.5)S(0.5)R;AHHGEAGHHLPEPS(0.734)S(0.266)R 120.71 0.00017162 728210000.0 338804.0 407817.0 341729.0 422039.0 354375.0 382812.0 316511.0 29493.699999999997 316241.0 108716.0 True False 336979.9169086627 421390.9423144179 389841.4728382848 475469.09412736597 399502.55570481333 356349.1074825183 301200.15374056285 31694.669659973977 238307.6429622958 101777.65180354967 3.3109421463082915 4.1403091429912635 3.8303248889132693 4.671645353393614 3.925248309677351 3.5012510228703273 2.9593938197939242 0.3114108952046835 2.341453538565373 1.0 16.635061285637068 1.9802698038241477 3.3478723315950707 1.1861293340512182 3.930606479507149 0.8048592764160744 0.5869092272970339 0.09434691712534346 2.090110066342226 0.27093678263739396 0.15979433799914325 95.55860559235789 -1.9802698038241477 2.7444771454559307 AHHSSQEMSSEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHHSSQEMSSEYR 13 0 Q99447-3;Q99447;Q99447-4;I3L1L9;I3L1R7;Q99447-2;I3L3V9 Q99447-3 PCYT2 Ethanolamine-phosphate cytidylyltransferase 0 80.52199999999998 0.01756 21931000.0 11996.0 17686.0 16762.0 18245.0 16178.0 17318.0 20019.0 10078.0 18101.0 16394.0 False True 11931.414868880895 18274.667818587237 19121.943902084186 20554.815129298007 18238.17240548142 16120.847422187016 19050.604489993486 10830.071535047073 13640.25109097338 15347.720884390461 0.7774062975705955 1.1907088978386136 1.245914233528467 1.3392747551334132 1.1883309934330848 1.0503740290574917 1.2412660246753038 0.705646891589089 0.8887476644722098 1.0 13.905736812805342 1.7450440446911875 24.999999933518485 0.8462072607815837 1.158247391470109 0.3980830589994677 0.15849384787065882 1.207918081559623 4672.737498519945 0.07287316541431392 0.04041193127983394 55.59606380764653 -1.7450440446911875 0.3120401306885253 AHIAQLCEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHIAQLCEK 9 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 116.52 0.0013009 810310000.0 1575200.0 1635590.0 1804440.0 1208370.0 1039380.0 1404960.0 1573500.0 1161800.0 2694450.0 1495640.0 False True 1566719.2982211723 1690029.6244149643 2058489.4675263583 1361349.518103034 1171738.8821120833 1307838.4221200985 1497383.7936462723 1248499.4155008611 2030438.9012802204 1400186.9747181737 1.1189357753713698 1.2070028181451478 1.4701532757371107 0.9722626639753188 0.8368445809517175 0.934045556582425 1.0694170283562752 0.8916662117587232 1.450119832523726 1.0 20.417188060414016 3.7076870909722714 24.49498418842222 1.0025864610931705 1.2595279049630563 0.2771695211644827 0.1780556977103497 606.4012240268881 481117.2512437313 0.04649681416446334 0.07204256268535794 5101.373137699113 -3.7076870909722714 0.2569414438698858 AHINNSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AHINNSEK 8 0 Q9NVM9-2;Q9NVM9;H0YH12 Q9NVM9-2 ASUN Protein asunder homolog 0 133.86 0.00090124 86713000.0 87464.0 85280.0 86553.0 83691.0 69902.0 65163.0 85085.0 63588.0 131060.0 104130.0 False True 86993.10354216394 88118.49324715137 98738.91006783745 94286.27201896846 78803.60535838558 60658.435187202456 80969.11349373565 68333.25945332134 98762.01911402514 97484.33424982183 0.8923803420478602 0.9039246554357264 1.0128695120879683 0.9671940906663246 0.8083719908927789 0.6222377744484963 0.8305858999481616 0.7009665704666412 1.0131065660347949 1.0 16.572882775683688 3.2172622809596656 9.318391631024035 0.7974086191295189 0.9461553780994014 0.15612036278637864 0.11761787163216746 0.33452326562306134 134.29381004106523 0.032812637957461165 0.039960846586755375 1649.1580573483623 -3.2172622809596656 0.14874675896988254 AHLALEEDLNSEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHLALEEDLNSEFR 14 0 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 0 ; 210.38 1.0277999999999997e-07 31794000.0 130231.0 236813.0 220024.0 285606.0 252893.0 182707.0 173009.0 120605.0 126215.0 169145.0 False True 129529.85076602417 244695.17754851852 251001.4667171083 321763.690316157 285097.4245357531 170076.89513601596 164639.89371143826 129605.15751978093 95111.00444435133 158350.02128768002 0.8179970530645068 1.545280357771296 1.585105355060895 2.031977562741199 1.8004255523136725 1.0740566610157336 1.0397213235123677 0.8184726245430856 0.6006377749173765 1.0 17.272757535750678 2.51994816477926 3.154771034072674 0.8577507531932013 1.5812050770250268 0.5256298956889192 0.31128381045306536 0.20764741566382347 4.165232754354457 0.11678860667334179 0.10344771726000203 331.0916016839014 -2.51994816477926 0.7234543238318255 AHLDHIPDYTPPLLTTIS(ph)PEQESDER ddPTM_BT-474_Trastuzumab_2h_R1 2 AHLDHIPDYTPPLLTTISPEQESDER 26 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 AHLDHIPDYTPPLLT(0.036)T(0.157)IS(0.795)PEQES(0.012)DER;AHLDHIPDYTPPLLTTIS(1)PEQESDER 195.54 1.2114e-24 759540000.0 222461.0 291320.0 237561.0 248686.0 249093.0 256332.0 234262.0 106469.0 272814.0 222672.0 True False 221263.2946937407 301016.41009334114 271007.5238827717 280169.6221016502 280813.5170601178 238612.37218062358 222929.85209225508 114414.25741862724 205582.64522030883 208460.88232090938 1.0614139795931736 1.4439947041476573 1.300040184352557 1.3439913473567227 1.3470801520825721 1.144638598493977 1.069408560542653 0.5488524088778217 0.9861929150996793 1.0 17.669417161817513 2.1511160211739853 2.5030932882379995 0.7999503336166776 1.2998716592630364 0.5899899804542987 0.15737155363738808 0.16141896527062866 2.024721277799586 0.0695170354246317 0.044989146009763475 141.6172057845617 -2.1511160211739853 0.4999213256463588 AHLLAEVIENLECDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHLLAEVIENLECDPR 16 0 Q96C86;A0A3B3ITF0 Q96C86 DCPS m7GpppX diphosphatase 0 ; 243.69 5.1714e-20 154656000.0 96055.0 122948.0 105106.0 115422.0 105767.0 115708.0 105709.0 58971.0 126812.0 110471.0 False True 95537.85055271383 127040.24985636452 119904.01120227073 130034.41336551565 119235.80051987592 107709.37830733416 100595.4518224047 63371.715468670416 95560.88179374166 103420.64620101861 0.9237792845252292 1.2283838336248307 1.1593817637651715 1.257335146724648 1.1529206681625004 1.0414688194655015 0.9726824915295678 0.6127569087655368 0.9240019793339916 1.0 16.658164698759578 2.192598663525694 2.489099675935619 0.8038104207026614 1.149525575722237 0.4748056727770512 0.13039399979993274 0.19645162874794317 2.4673506614560705 0.05708974061850833 0.03836379408842371 155.8111968316373 -2.192598663525694 0.3457151550195755 AHLMEIQVNGGTVAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHLMEIQVNGGTVAEK 16 0 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2 P39023 RPL3 60S ribosomal protein L3 0 ; 196.22 4.6457e-11 818470000.0 599740.0 520980.0 515220.0 489880.0 513210.0 642120.0 611500.0 377710.0 757350.0 608840.0 False True 596511.0664773786 538320.50436094 587758.4976274795 551898.7577714715 578564.2514660108 597731.7557878933 581919.4088431494 405896.63817251706 570711.2404700677 569983.3099458507 1.0465412865054733 0.9444495917118717 1.03118545292724 0.9682717864561731 1.0150547241830208 1.0486829094077836 1.0209411375544182 0.7121202166622701 1.0012771084898715 1.0 19.120560149835452 AHLS(ph)ENELEALEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHLSENELEALEK 13 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 AHLS(1)ENELEALEK;AHLS(1)ENELEALEK 213.99 9.5322e-10 228130000.0 805660.0 664500.0 590970.0 587860.0 548670.0 763020.0 622460.0 562720.0 918690.0 690780.0 True False 801322.4160772414 686617.4808012672 674173.4391966766 662283.0157253557 618539.8722781235 710274.223355881 592349.2317718844 604713.023834261 692291.1593153042 646693.8289934885 1.2391063284528572 1.0617350127956466 1.042492457746129 1.024105977253765 0.9564647821687372 1.0983160678390094 0.9159654928110482 0.9350839558426494 1.0705083739437924 1.0 19.302723318125572 7.999999999993297 0.7342036046354148 0.9870791541777033 40.63321829376082 0.6284789372011264 0.05429911691588791 213.9233501103375 0.9789243717639609 0.019363667086764062 13998.373114385691 99999999.99845655 -7.999999999993297 39.64613913958311 AHLS(ph)ENELEALEKNDMEQMK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHLSENELEALEKNDMEQMK 20 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK 179.79 3.4398e-17 168211000.0 220090.0 168476.0 132407.0 157172.0 156468.0 212581.0 206786.0 148575.0 317140.0 198379.0 True False 218905.0598942978 174083.62181410752 151048.75469772465 177069.95908479163 176393.27234150504 197885.7758318478 196782.971180768 159662.42094856306 238985.09645827863 185718.28237919312 1.1786941871847871 0.9373531759176496 0.8133219452747176 0.9534331074808045 0.9497894880448625 1.065515862503033 1.059577811402452 0.8597022269599172 1.286815134173636 1.0 17.502756317709682 2.7539380089719536 22.91559714047685 1.0307475205053467 0.9556602033289491 0.08639713788535264 0.12968865141962185 799.5409547135911 1191482.6576808356 0.03980794718889541 0.04202953745036389 567.4636000903674 -2.7539380089719536 -0.0750873171763976 AHLTVGQAAAGGS(ph)GNLLTER ddPTM_BT-474_Trastuzumab_2h_R1 6 AHLTVGQAAAGGSGNLLTER 20 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 AHLTVGQAAAGGS(1)GNLLTER;AHLTVGQAAAGGS(1)GNLLTER;AHLTVGQAAAGGS(1)GNLLTER;AHLTVGQAAAGGS(1)GNLLTER;AHLTVGQAAAGGS(1)GNLLTER;AHLTVGQAAAGGS(1)GNLLTER 309.96 1.9606e-66 6325870000.0 2134469.0 2726060.0 2892217.0 3108991.0 3084458.0 3495783.0 3142355.0 1424931.0 3494920.0 3011196.0 True False 2122977.256065798 2816795.2591619315 3299416.0139991776 3502588.9418279743 3477245.443285104 3254127.749398035 2990347.2836881727 1531266.5868730077 2633643.7955286857 2819018.8932654 0.7530908221784407 0.9992112028377033 1.1704128772891307 1.242485089474077 1.2334949054765822 1.154347619724048 1.0607758929293003 0.5431913175648393 0.9342412716070924 1.0 21.426761716309827 1.9105122760927278 9.114483346661503 0.7802127752968855 1.1049522510957364 0.31066471880268065 0.17475131538454025 0.38815719473727556 36.998163247454265 0.07536347599933205 0.047652495129989855 81.37898636467719 -1.9105122760927278 0.3247394757988509 AHMGMFTELAILYSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHMGMFTELAILYSK 15 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;A0A087WV74;A0A087WXH4;P53675;P53675-2 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 113.76 0.00065983 946720000.0 1580240.0 1770440.0 1596060.0 1693540.0 1560260.0 1824580.0 1868930.0 1141710.0 1950100.0 1651170.0 False True 1571732.163421169 1829368.0251464178 1820771.374797784 1907941.990357431 1758949.8626144435 1698451.0791993274 1778522.7158940765 1226910.1976859095 1469523.9850012271 1545790.9169622413 1.016781859806698 1.183451141465792 1.1778898134399243 1.234282055497442 1.1378963631582841 1.0987586099529494 1.1505583946561126 0.7937103163324377 0.9506615473515057 1.0 20.559913763450552 1.753957367679169 24.99999999999609 0.8998883764750197 1.147351390947367 0.6708236142050836 0.07292195201196533 2.7108539340850437 4407.165963773375 0.032638536530632485 0.018099800106334957 56.748889538420066 -1.753957367679169 0.2474630144723472 AHNNELEPTPGNTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHNNELEPTPGNTLR 15 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 64.53699999999999 0.064222 636420000.0 402610.0 494240.0 536350.0 516620.0 423690.0 516860.0 588600.0 458410.0 682750.0 559170.0 False True 400442.39249417593 510690.47962561104 611863.4179622276 582024.0390297578 477644.4100926213 481130.684757569 560127.1693296449 492618.88195881434 514495.41088128125 523483.29187047755 0.7649573514817262 0.9755621383842911 1.1688308442012652 1.1118292561928886 0.9124348713899394 0.9190946344026055 1.070000089837125 0.9410403151524083 0.9828306249143476 1.0 18.997783965517865 3.1913289921877745 24.99947425471034 0.9705863514095507 1.0148543603785911 0.021067854555884225 0.10719585036362952 510.4293816930084 270166.11957751645 0.03263241780644341 0.039003272761889196 1553.5634391174135 -3.1913289921877745 0.04426800896904037 AHPPELK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHPPELK 7 0 P62308;A8MWD9;C9JVQ0 P62308 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 0 ; 86.866 0.019762 2472800000.0 1426740.0 1485430.0 1431010.0 1213310.0 1179300.0 1575360.0 1581990.0 1436480.0 2201410.0 1680900.0 False True 1419058.5903657177 1534871.6395886012 1632483.7694381017 1366914.9215965234 1329476.8647412695 1466459.0711985524 1505463.099911325 1543677.4318976386 1658902.0028826972 1573623.5229091083 0.9017776931437506 0.9753741077479143 1.0374042747023635 0.8686416424873662 0.8448506554372722 0.9318995616483641 0.9566856862486541 0.9809699775228897 1.054192428323604 1.0 20.585658997972594 1.6361076752064354 2.0869678560219134 1.025759067009012 0.9289937568297203 0.3558692505217891 0.05244680342279172 0.3524978642181333 3.2996900544689707 0.04221262683373265 0.01599578097314611 43.262107805671334 -1.6361076752064354 -0.09676531017929169 AHPTLQAPS(ph)LEDVTK ddPTM_BT-474_Trastuzumab_2h_R1 3 AHPTLQAPSLEDVTK 15 0 Q96PE2;H0YFZ8 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 AHPTLQAPS(1)LEDVTK;AHPT(0.001)LQAPS(0.999)LEDVTK;AHPTLQAPS(1)LEDVTK 193.32 1.0246e-07 1327340000.0 351380.0 339250.0 376390.0 348170.0 347390.0 470660.0 402110.0 360880.0 569370.0 406720.0 True False 349488.20912198845 350541.73116904404 429382.4403594715 392248.2863013252 391628.057358152 438124.3820144669 382658.40309062816 387810.6981115088 429056.39266711817 380762.7813894891 0.9178633684905529 0.9206302409333139 1.1276901560403523 1.0301644632122997 1.0285355515289942 1.1506491795643798 1.0049784847516385 1.0185099937979765 1.1268338546677141 1.0 18.538532940138843 4.258696210564765 24.722105844697033 1.0575058911942523 0.919246613959329 0.5372077668857227 0.05252168506669387 156.8089049265509 192523.22179736444 0.012370865676294416 0.03378227504703983 18142.461517700456 -4.258696210564765 -0.13825927723492326 AHPWTK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHPWTK 6 0 A0A3B3ITW1;P49841;P49841-2;P49840;A8MT37 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 0 ; 114.67 0.025089 980050000.0 2069590.0 2393200.0 2229200.0 2185300.0 2188300.0 2394700.0 2459200.0 2162000.0 2856200.0 2358600.0 False True 2058447.5573930629 2472856.2152800495 2543051.9834462497 2461958.7559361453 2466967.0339297187 2229160.0255174497 2340239.100943704 2323339.41841355 2152327.7811191715 2208072.12870095 0.9322374620996126 1.1199164117591016 1.1517069349280606 1.1149811294364562 1.1172492971871717 1.0095503659243712 1.0598562748584262 1.0522026831525715 0.9747542904703145 1.0 21.0743558691665 2.736262146562675 24.93658796400197 1.028298997361642 1.0941598991863966 0.22865435734643302 0.06061947583738115 312.3096552257419 3388292.8236193913 0.01934271396929113 0.019052915403010646 544.8314218995092 -2.736262146562675 0.06586090182475446 AHQCGDDDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHQCGDDDK 9 0 Q9BQ61;K7EN60 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 ; 182.46 4.63e-05 303420000.0 615710.0 402900.0 335340.0 320560.0 338780.0 377410.0 424110.0 232710.0 631680.0 409960.0 False True 612395.0857718125 416310.2829418072 382552.9571724686 361142.86313224275 381921.624893621 351320.53502757807 403594.17904246645 250076.00187743647 476010.9280783421 383796.00181558554 1.5956265382516128 1.0847176129308527 0.9967611839695135 0.9409760951750934 0.9951162156116854 0.915383519801199 1.0515851575660602 0.6515857400661467 1.240270679805221 1.0 18.549980156812023 4.990799202962617 1.533712855229608 0.942871838045589 2.235794284914937 0.6361152250307254 0.13915232330679939 1.2483690859921128 1.6841662797903791 0.03588573157472354 2.9196326525056144 97903.7220671872 -4.990799202962617 1.2929224468693477 AHQCGDDDKTRPLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AHQCGDDDKTRPLVK 15 2 Q9BQ61;K7EN60 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 218.4 1.1671e-12 994740000.0 640140.0 666800.0 651360.0 575090.0 566870.0 751810.0 688500.0 442760.0 1023100.0 714180.0 False True 636693.5573662395 688994.0349108878 743065.8262773874 647896.3350346935 639057.5343982718 699839.1442703787 655194.6246745854 475800.9994897238 770970.7138376266 668600.4209597392 0.952278128171533 1.030501946023119 1.1113750500048403 0.9690336929562111 0.9558138379286986 1.0467225600393701 0.9799494647850946 0.7116373017036657 1.1531113198088336 1.0 19.350784737732447 1.9846617828274191 24.479576486479623 0.9036052833826345 1.0121071919057891 0.0 0.11330992578689157 965.8297167302428 1541449.3958991186 0.04451035918907009 0.029746958821829872 96.52988367301016 -1.9846617828274191 0.10850190852315467 AHQDALPR ddPTM_BT-474_Trastuzumab_2h_R1 4 AHQDALPR 8 0 P43155-2;P43155;P43155-3;B7ZBP5;A6PVN3 P43155-2 CRAT Carnitine O-acetyltransferase 0 ;;; 136.27 0.00079823 493873000.0 590850.0 715810.0 691370.0 638450.0 610810.0 682570.0 721790.0 459905.0 817840.0 594270.0 False True 587668.9292496069 739635.3031337182 788708.8865042328 719277.7045382463 688593.0329454876 635385.542496951 686874.2601944347 494225.44645026996 616294.2904945404 556343.1798198565 1.0563065218843766 1.3294587405083522 1.4176661368610937 1.2928669400982822 1.2377127246683486 1.1420748299685965 1.2346233136476015 0.8883463739239147 1.1077592264078728 1.0 19.085615557188913 2.1211962673703275 1.3818131413144006 0.9912650869786672 1.2779707978914794 0.4786556461023531 0.11102249807835535 0.33663497225989114 1.2201085552022544 0.07199099811202303 0.03764354578769034 132.18928921234433 -2.1211962673703275 0.28670571091281216 AHQGTGAGIS(ph)PVILNSGEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 AHQGTGAGISPVILNSGEGK 20 0 Q8IZD4;Q8IZD4-2;F5GZK9 Q8IZD4 DCP1B mRNA-decapping enzyme 1B 1 AHQGTGAGIS(1)PVILNSGEGK;AHQGTGAGIS(1)PVILNSGEGK;AHQGTGAGIS(1)PVILNSGEGK 270.05 4.1360999999999997e-38 1642750000.0 1199230.0 1196390.0 1071540.0 1049200.0 1060220.0 1358680.0 1268850.0 649850.0 1676310.0 1157900.0 True False 1192773.4789269778 1236211.1179169717 1222403.5180073567 1182028.6124230996 1195232.7325837242 1264757.6495886983 1207470.8780222922 698345.1068714372 1263205.8619031876 1084001.8306719365 1.1003426794838689 1.1404142344950523 1.1276766177134863 1.0904304577515331 1.1026113598376852 1.1667486288327735 1.1139011428364667 0.6442287154059106 1.1653170927951002 1.0 20.047935762454237 1.9423923217022268 24.99703314705882 0.8925048070776915 1.121935847993887 0.30030956564437217 0.12322242505340013 242.90106150755585 105398.69111205268 0.047723767210992495 0.03079994086468456 87.57745525332118 -1.9423923217022268 0.22943104091619548 AHQLEEDIVSVTHK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHQLEEDIVSVTHK 14 0 B8ZZD4;Q86VP1-2;Q86VP1;Q86VP1-4;Q86VP1-3 B8ZZD4 TAX1BP1 Tax1-binding protein 1 0 ; 268.59 1.8591999999999999e-25 358280000.0 405780.0 495600.0 445260.0 473990.0 476080.0 542410.0 499540.0 306683.0 572590.0 453580.0 False True 403595.3255663967 512095.7464034733 507948.7377307012 533997.0854007108 536705.9660527628 504914.4733957991 475375.3417718842 329569.24276471895 431482.8668129084 424632.13607062516 0.9504587413027789 1.2059750143788013 1.1962088937287092 1.2575522200041307 1.2639315785640337 1.1890632632472766 1.1194992121199687 0.7761288295662689 1.0161333308535645 1.0 18.695854032668624 1.920131256547778 6.294075595311024 0.9126580185317995 1.1845206860635737 0.536583239212239 0.10204888822951991 0.16154268419955853 10.291688471202571 0.044043717487914615 0.02701198158917405 83.20151925349826 -1.920131256547778 0.27186266753177424 AHQLVHEGYK ddPTM_BT-474_Trastuzumab_2h_R1 1 AHQLVHEGYK 10 0 O00743;O00743-2;O00743-3 O00743 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed 0 175.15 1.6701e-06 66198000.0 99449.0 106810.0 117720.0 97063.0 73843.0 102350.0 116830.0 23273.0 167460.0 90330.0 False True 98913.57763382254 110365.1062819915 134293.95275941712 109351.16584790638 83246.46834824854 95274.78540598461 111178.48656605913 25009.749437899438 126191.726849036 84565.06206459612 1.169674274681737 1.3050910575538592 1.5880548004190542 1.2931009944080343 0.9844073464365183 1.1266447759857108 1.314709453901116 0.2957456522505171 1.4922442409211834 1.0 16.367774118579717 2.8647706305670764 1.1020355796711114 0.9145677824581089 1.3555254864371682 0.13223716587183754 0.31738002950730276 0.7265423036569326 1.869695562343834 0.15357717684826763 0.16253819679894163 732.4375994445705 -2.8647706305670764 0.4409577039790593 AHQLVMEGYNWCHDR ddPTM_BT-474_Trastuzumab_2h_R1 9 AHQLVMEGYNWCHDR 15 0 P67775;P62714;H0YC23 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 0 ;;;;;;;; 300.07 1.7318e-44 10242690000.0 1824805.0 2094355.0 1923580.0 2032587.0 1902101.0 1982818.0 1931120.0 794321.0 2126960.0 1667174.0 False True 1814980.4526348938 2164064.3401106684 2194403.343942911 2289912.3057941603 2144322.2877140925 1845750.4587115129 1837704.3480052056 853597.2665003093 1602799.2078038102 1560773.527980529 1.1628723963452154 1.386533216584428 1.4059716573885193 1.4671650080822793 1.3738843267598293 1.1825869837116683 1.1774317766543587 0.5469065506286305 1.0269261869642663 1.0 20.57382978328131 1.9517614392112388 5.050017871970961 0.8141728379601123 1.3339484465176308 0.6530958557859009 0.15248172622594364 0.11167579812300203 6.368844434064194 0.06778087936206827 0.04141390707923131 89.48730709076024 -1.9517614392112388 0.5197756085575185 AHQVVEDGYEFFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AHQVVEDGYEFFAK 14 0 F8W0W8;P36873;P36873-2;F8VYE8;P62140;P62136;P62136-2;P62136-3;E9PMD7 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 95.347 0.0038042 1341200000.0 880330.0 827120.0 740320.0 762680.0 774690.0 943680.0 845810.0 678700.0 1266300.0 976070.0 False True 875590.4010938586 854650.189195401 844550.6210232062 859235.209800658 873342.1795526277 878445.622783776 804894.9389920279 729348.040368768 954237.3325506649 913776.3769444299 0.9582108086682422 0.9352946856136284 0.9242421256799095 0.9403123471782542 0.9557504457195426 0.9613354480898312 0.8808445472003885 0.7981690693379813 1.0442788373907543 1.0 19.80148162074149 2.240782194665266 24.99972077302636 0.9004087353923432 0.9445926003997693 0.0 0.06523950195648809 149.10521179667685 1677928.874959886 0.023327987006992654 0.01865390073605235 174.09335495764086 -2.240782194665266 0.044183865007426104 AHS(ph)IQIMK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSIQIMK 8 0 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 1 AHS(1)IQIMK;AHS(1)IQIMK 73.781 0.019701 376760000.0 1324180.0 912210.0 850510.0 917330.0 791310.0 990950.0 980510.0 703580.0 1405090.0 995500.0 True False 1317050.7620102288 942572.3584074106 970254.4152345555 1033463.8839440356 892078.6380381691 922447.9589453868 933078.985388057 756084.7123068491 1058824.3967413849 931966.3377095703 1.4131956367083538 1.01138026157029 1.0410831120993953 1.1089068801389423 0.9572004931321549 0.9897867783641454 1.001193871101848 0.811278993364746 1.1361187136260575 1.0 19.829918320629112 7.309404731826297 1.1555738735524106 0.9822749656620486 199.99914473467834 0.654848474365417 0.08681960697575221 440.7204574166638 1.6532971468971291 0.02530803699491083 231221.59362625744 20389413.421021152 -7.309404731826297 199.0168697690163 AHS(ph)PAEGASVESSSPGPK ddPTM_BT-474_Trastuzumab_2h_R1 3 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 1 AHS(1)PAEGASVESSSPGPK;AHS(0.999)PAEGAS(0.001)VESSSPGPK;AHS(1)PAEGASVESSSPGPK 189.59 2.0571e-14 1496250000.0 1259870.0 1270230.0 1063190.0 1110370.0 1151760.0 1366000.0 1307860.0 1025870.0 1547090.0 1224740.0 True False 1253086.999904716 1312508.8376797508 1212877.9105868577 1250942.7281511982 1298429.8089836375 1271571.6352181244 1244593.8152896196 1102425.6286623084 1165830.399443898 1146576.0446473316 1.0928948025336997 1.1447202684959787 1.0578259647487398 1.0910246502978076 1.1324410753610448 1.1090163981310455 1.0854873700701089 0.961493687059716 1.0167929156434528 1.0 20.128900611637015 1.8423469784736557 5.193549413071508 0.9914709441582481 1.1042226265503325 0.7919075188430149 0.02574694573339981 0.09180354801320498 3.5164504700113954 0.011728863533581277 0.006812149670051663 69.55798273847093 -1.8423469784736557 0.11275168239208444 AHS(ph)SPASLQLGAVS(ph)PGTLTPTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 AHS(0.772)S(0.226)PAS(0.002)LQLGAVS(1)PGTLTPTGVVSGPAATPTAQHLR 170.44 2.5899e-18 1092100000.0 182420.0 289120.0 277320.0 290950.0 266330.0 258520.0 202430.0 162100.0 299180.0 309170.0 True False 181437.87098876742 298743.1844232691 316364.2454913483 327784.24016822444 300245.54683841456 240649.12089062185 192637.6875423039 174196.72512712164 225451.0978066081 289438.5059062458 0.6268615518888089 1.03214734158432 1.0930274964652569 1.132483182021398 1.0373379516257915 0.8314343668170133 0.6655565296647248 0.6018436440642317 0.7789257241385694 1.0 18.14289734027528 2.5322570709501346 3.697738647625699 0.7141618715540667 0.9999610123106466 0.27433152329230215 0.16417813379000473 0.242770433227785 6.679670809650131 0.057087114608692965 0.05148790135760404 340.60974639821336 -2.5322570709501346 0.28579914075657986 AHS(ph)SPASLQLGAVSPGT(ph)LTPTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 AHS(0.748)S(0.25)PAS(0.002)LQLGAVS(0.002)PGT(0.794)LT(0.187)PT(0.016)GVVSGPAATPTAQHLR 157.05 6.4274e-14 519870000.0 59574.0 56942.0 65733.0 73133.0 53183.0 62367.0 55165.0 31201.0 58038.0 55947.0 True False 59253.26020329366 58837.28004783413 74987.63503852162 82391.63030150467 59955.53980966236 58055.71608612639 52496.45819923525 33529.377055467725 43735.312569355985 52376.41456136349 1.1312966093521608 1.1233544819854206 1.43170615374344 1.5730674004990504 1.1447049270510732 1.1084324227293014 1.0022919407309012 0.6401617471578771 0.8350192149582193 1.0 15.676629682621211 2.322111747842205 1.693682979503422 0.7932129898438819 1.2974009575595749 0.604645478814345 0.15889651006173283 0.23688993477372397 1.3737815518961498 0.08425201726779559 0.056793807678363235 209.94800290581017 -2.322111747842205 0.504187967715693 AHS(ph)SPASLQLGAVSPGTLT(ph)PTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 AHS(0.695)S(0.282)PAS(0.022)LQLGAVS(0.001)PGT(0.277)LT(0.533)PT(0.171)GVVS(0.014)GPAAT(0.004)PT(0.001)AQHLR 78.074 0.0049284 593230000.0 39242.0 40307.0 44171.0 51770.0 43162.0 51520.0 34551.0 22912.0 47703.0 38383.0 True False 39030.72543219608 41648.59412890398 50389.89285878538 58324.07669190234 48658.42485878287 47958.54366503493 32879.6361323625 24621.809784778576 35947.234837451135 35933.36407866044 1.0861973665130635 1.1590507929547742 1.4023149279449225 1.6231176286257862 1.3541294033107076 1.3346522067917328 0.9150169202189606 0.685207478233317 1.0003860133651927 1.0 15.133036386206221 2.208341089312758 4.861183295833041 0.8478069201345256 1.3389173945690875 0.6266259068956885 0.15971437471931643 0.11989586334212345 6.845921155904438 0.0651944595268147 0.0490132899481404 161.5626951345041 -2.208341089312758 0.4911104744345619 AHS(ph)SPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 5 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 AHS(0.416)S(0.416)PAS(0.168)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR;AHS(0.495)S(0.495)PAS(0.011)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR;AHS(0.83)S(0.169)PAS(0.001)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR;AHS(0.333)S(0.333)PAS(0.333)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR;AHS(0.818)S(0.175)PAS(0.007)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR 295.94 2.3591999999999993e-92 6587360000.0 509954.0 913474.0 774193.0 1018771.0 774809.0 646574.0 610735.0 643241.0 611567.0 894859.0 True False 507208.4643252163 943878.4298833065 883192.6449938118 1147747.3041430549 873476.3334972591 601877.8612514813 581191.4148157332 691242.9097316146 460854.5074279494 837748.3324926659 0.6054425233125208 1.1266849401834766 1.0542457809088432 1.3700383034222308 1.0426476539777607 0.7184471014828914 0.6937541887865486 0.8251200067147447 0.5501109218047701 1.0 19.676157384237843 2.755964842555748 8.507463802290072 0.7480197559019082 1.0641358128405687 0.3176202342802281 0.2051458777835747 0.258947373167419 111.06007256340483 0.062418464862413786 0.06462564842147996 570.1181176366019 -2.755964842555748 0.3161160569386605 AHSEPLALCGETAPRDS(ph)PPASEAPASEPGYVNYTK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSEPLALCGETAPRDSPPASEAPASEPGYVNYTK 35 1 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 AHSEPLALCGETAPRDS(0.957)PPAS(0.042)EAPASEPGYVNYTK;AHS(0.003)EPLALCGET(0.001)APRDS(0.963)PPAS(0.033)EAPASEPGYVNYTK 224.71 5.7171e-37 411340000.0 233988.0 265850.0 230712.0 241273.0 244900.0 271750.0 252636.0 205696.0 343510.0 281940.0 True False 232728.23460651052 274698.6565402816 263194.2442153471 271818.1370617223 276086.56336397596 252964.5621306917 240415.031516759 221046.0800231239 258856.56329817497 263946.34781902167 0.881725534486591 1.0407367209666125 0.9971505436241526 1.0298234444528023 1.0459950124154715 0.9583938714095799 0.9108481079708015 0.8374659541593169 0.9807165942514325 1.0 18.009885178256155 2.4348899730902027 3.9406622521406254 0.9104447385723863 1.0031946684824746 0.17621650055770233 0.060933820492843044 0.2536092169291569 8.456747998664577 0.021426444600278968 0.018083948864270255 272.2011609084756 -2.4348899730902027 0.09274992991008835 AHSEVFTKPSGQQTLS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSEVFTKPSGQQTLSPDR 19 1 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 AHSEVFTKPSGQQT(0.001)LS(0.999)PDR;AHSEVFTKPS(0.001)GQQT(0.136)LS(0.864)PDR 319.38 4.402999999999997e-62 660490000.0 620950.0 678280.0 648340.0 616300.0 632320.0 822080.0 735290.0 608250.0 882410.0 805660.0 True False 617606.8741940306 700856.1397710823 739620.6365276977 694323.5168093379 712842.20394573 765251.5445681667 699721.2136194274 653640.7036309169 664951.8791882118 754242.0890397722 0.8188443513942689 0.9292190795973005 0.9806143773669683 0.9205579042841314 0.9451106140910958 1.0145967132945481 0.9277143556258503 0.8666192368859563 0.8816159809309554 1.0 19.524668134005086 4.73445144899141 5.472181821403677 0.9360888297774479 0.8147622435609163 0.39276044314787273 0.04519188094512181 0.16438626838385567 18.953379968393282 0.011704625740353003 0.07474442446062873 54256.459310792336 -4.73445144899141 -0.12132658621653158 AHSIQIMK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSIQIMK 8 0 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 0 ; 93.162 0.011264 2460800000.0 4301400.0 4686300.0 4663100.0 3871800.0 3563500.0 4176200.0 4640500.0 3183700.0 6122500.0 4431700.0 False True 4278241.740330471 4842280.662571822 5319623.947608212 4361969.483015406 4017290.6024807207 3887509.1237173714 4416021.2865685 3421283.860501028 4613691.912296808 4148865.111830738 1.0311836188963597 1.1671337900969034 1.2821877318785286 1.0513644973843541 0.9682866263897506 0.9370054265278246 1.064392591115086 0.8246312589785172 1.112037096395491 1.0 21.984285322302284 3.488118899118463 5.102596319407982 0.9709266185818894 1.1628878069611366 0.41929139278083827 0.09157118411147903 0.15297566511222738 11.792924108428384 0.024721301436244222 0.03638025874331771 3076.939089476857 -3.488118899118463 0.19196118837924714 AHSLGGLDPAFTS(ph)TEDLNCK ddPTM_BT-474_Trastuzumab_2h_R1 4 AHSLGGLDPAFTSTEDLNCK 20 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 AHSLGGLDPAFTS(0.98)T(0.02)EDLNCK;AHSLGGLDPAFTS(0.768)T(0.231)EDLNCK;AHSLGGLDPAFT(0.001)S(0.997)T(0.002)EDLNCK;AHSLGGLDPAFTS(1)TEDLNCK 296.62 7.853e-55 3048420000.0 3454760.0 2573210.0 2275160.0 2219550.0 2016740.0 2962240.0 2410570.0 1674770.0 3869840.0 2604830.0 True False 3436159.956019918 2658857.7393117067 2595482.75195477 2500544.8024244118 2273559.8848455045 2757467.3211629093 2293961.519828344 1799749.841709742 2916169.785199292 2438587.5192928384 1.409077971913989 1.090326969311622 1.0643385695287366 1.0254070369184618 0.9323265484048775 1.1307641408591078 0.940692717271663 0.7380296288203952 1.195843807994616 1.0 21.21761431999772 7.999999926925217 0.7118021232270035 0.9610642071076435 60.8013220533001 0.5074937491322573 0.11841632521950143 239.7416852364936 1.2035232153182958 0.04441876642610672 22878.862695482665 99999983.17391089 -7.999999926925217 59.84025784619245 AHSLGGLDPAFTS(ph)TEDLNCKENLEQDLGDDNSNDLLLSCPHFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSLGGLDPAFTSTEDLNCKENLEQDLGDDNSNDLLLSCPHFR 43 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 AHSLGGLDPAFT(0.066)S(0.467)T(0.467)EDLNCKENLEQDLGDDNSNDLLLSCPHFR;AHSLGGLDPAFT(0.033)S(0.484)T(0.484)EDLNCKENLEQDLGDDNSNDLLLSCPHFR 190.9 1.5722999999999998e-28 398370000.0 92932.0 107933.0 85586.0 109926.0 86941.0 121037.0 105163.0 73348.0 146889.0 115694.0 True False 92431.66443771575 111525.4846581238 97635.76487315213 123842.62032903319 98012.4210103201 112669.99708045085 100075.86392832738 78821.6002135972 110690.17416175832 108310.30986938343 0.8533967315686152 1.0296848452618932 0.9014447931216867 1.1434056506567187 0.9049223580702331 1.0402518210530924 0.9239735723128633 0.727738664109187 1.0219726478046722 1.0 16.72481105154274 2.0015922212584663 24.918851447889175 0.8712034146797681 0.981791747373338 0.020939606149870116 0.10980995202205637 82.2330945057618 1286959.6885708417 0.03921888242810714 0.028751518110101282 100.36729537577413 -2.0015922212584663 0.11058833269356982 AHSQYYAAQQAGTRPHAGDRDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSQYYAAQQAGTRPHAGDRDPR 23 2 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;D6RCL7;D6RJA4;D6RF61 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 0 ; 55.228 0.031543 336710000.0 87079.0 100034.0 88258.0 78934.0 91283.0 79403.0 89091.0 73230.0 124583.0 102205.0 False True 86610.17633938645 103363.57121817004 100683.95924771184 88927.03630671468 102907.34897326985 73914.05750455693 84781.32796932956 78694.79445440526 93881.1889766718 95682.18939789712 0.905185979589321 1.0802801636188495 1.0522748264989497 0.9294000990812309 1.0755120636435973 0.7724954661852814 0.8860721990459894 0.8224602190816381 0.9811772657737187 1.0 16.545962781181522 2.748878347245492 24.998495264844077 0.8762152364466049 1.0105508039419835 0.32050807215426447 0.0828217890162961 701.1914297183686 1698893.394058103 0.02404962749591728 0.02524869082690089 560.8908396283604 -2.748878347245492 0.13433556749537856 AHSS(ph)PASLQLGAVSPGTLT(ph)PTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 AHS(0.455)S(0.545)PASLQLGAVSPGT(0.019)LT(0.95)PT(0.028)GVVS(0.002)GPAATPTAQHLR 215.45 1.0965999999999999e-38 478200000.0 99196.0 94202.0 106350.0 118160.0 116600.0 129110.0 86407.0 66954.0 113250.0 117680.0 True False 98661.93975771173 97337.45662368851 121323.15558922886 133119.04388478238 131448.31885765435 120184.9295922488 82227.16330320532 71950.44746552313 85341.05497225218 110169.56164908304 0.8955462677792447 0.8835240439072644 1.1012402497858051 1.208310552317518 1.193145519416237 1.0909086665431886 0.7463691610675453 0.6530882612994583 0.7746336982267777 1.0 16.749366156388714 2.236702462536635 24.979252360428674 0.7520127018490826 1.0683748523309438 0.4902617137787446 0.13137902804436571 37.573611158699535 505091.8337638141 0.05121096112276098 0.03976649210957975 172.4655916190756 -2.236702462536635 0.3163621504818611 AHSS(ph)PASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 AHS(0.149)S(0.845)PAS(0.003)LQLGAVS(0.004)PGTLTPTGVVSGPAATPTAQHLR 257.09 6.4607e-62 4438600000.0 165090.0 249450.0 279630.0 305680.0 292690.0 302660.0 297350.0 168180.0 264250.0 277580.0 True False 164201.17378322326 257752.79245429044 318999.4734124689 344379.0566579232 329962.33659045375 281737.82658500515 282966.0445126908 180730.4456007359 199129.1282685884 259864.60675180596 0.6318720191859376 0.9918734054478897 1.227560295339265 1.3252249352557508 1.2697471222219863 1.0841716003830029 1.0888979767181177 0.6954792646054709 0.766280297873633 1.0 17.987400628290168 1.752674870973147 24.996256884637816 0.7972805852948766 1.1060238709280215 0.27848127177014936 0.19510672113893118 5.385943243241233 9551.713431234148 0.09513240292301964 0.05275599474458387 56.58155398507693 -1.752674870973147 0.3087432856331449 AHSSMVGVNLPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSSMVGVNLPQK 13 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 66.393 0.055991999999999986 2411000000.0 1707630.0 2563600.0 3392600.0 2809800.0 2121600.0 2833400.0 3497200.0 2477700.0 3527300.0 3360200.0 False True 1698436.309815527 2648927.8762710774 3870248.5909921755 3165520.391904719 2391773.1842915895 2637533.727106173 3328027.075398629 2662598.555505671 2658044.1783984546 3145749.1591880466 0.5399147305991532 0.8420658298625424 1.2303106176435028 1.0062850633398168 0.7603191046894957 0.838443751753859 1.0579441992945269 0.8464115925228183 0.8449638047696485 1.0 21.584972204723854 4.681386566903019 4.02888364619218 0.939948471179789 0.5241735313251106 0.4678448845088642 0.1299751585288282 0.18684537955603525 5.599476080832732 0.032547088289924114 0.19544479959122535 48016.065100776264 -4.681386566903019 -0.4157749398546784 AHSSPASLQLGAVS(ph)PGT(ph)LTPTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 AHSSPASLQLGAVS(0.958)PGT(0.395)LT(0.395)PT(0.123)GVVS(0.051)GPAAT(0.058)PT(0.021)AQHLR 56.637 0.07485499999999999 112400000.0 10203.0 26693.0 24497.0 23492.0 26441.0 23277.0 25751.0 15686.0 17689.0 20668.0 True False 10148.068181659864 27581.460368740773 27945.96466825895 26466.08479131098 29808.10462191458 21667.915778164184 24505.32575162708 16856.56897189406 13329.782970456228 19348.950545234973 0.5244764132264015 1.4254757799013138 1.4443142331117873 1.3678305047830477 1.5405540756449636 1.119849664585571 1.2664937922259538 0.8711877645501188 0.6889150364663538 1.0 14.239967698671384 1.7036141124334665 4.066214597664907 0.8235031250935876 1.2697914598482707 0.28780766979457384 0.27666901978585945 0.20961520695592115 8.044665148196971 0.15002686092024767 0.0720466098590126 50.53754167004029 -1.7036141124334665 0.4462883347546831 AHSSPASLQLGAVS(ph)PGTLTPTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 AHS(0.001)SPAS(0.002)LQLGAVS(0.997)PGTLTPTGVVSGPAATPTAQHLR;AHSSPASLQLGAVS(0.999)PGT(0.001)LTPTGVVSGPAATPTAQHLR 181.87 7.4164e-23 16207500000.0 136365.0 267240.0 325790.0 367300.0 288480.0 320780.0 375820.0 263440.0 243890.0 305480.0 True False 135630.8259915759 276134.9218500087 371658.40018255665 413800.14233988273 325216.2180450784 298605.23363489733 357640.15082818095 283099.23052121483 183786.57745856585 285984.00486541406 0.4742601812832317 0.9655607207121938 1.2995775772755596 1.4469345673182659 1.1371832428115247 1.0441326387306973 1.2505599779836944 0.9899128122722919 0.6426463520050956 1.0 18.125574933515097 -1.035261128613769 6.892624463953804 0.999999987654564 1.055453193213394 0.0 0.2789802856834859 5.5183602695292367e-08 7.696453580810846e-09 0.2738493476190852 0.06454689581429965 0.09220168785790729 1.035261128613769 0.05545320555882993 AHSSPASLQLGAVSPGTLT(ph)PTGVVSGPAATPTAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 AHSSPASLQLGAVSPGT(0.101)LT(0.509)PT(0.101)GVVS(0.193)GPAAT(0.053)PT(0.043)AQHLR;AHSSPASLQLGAVSPGT(0.003)LT(0.744)PT(0.209)GVVS(0.017)GPAAT(0.022)PT(0.005)AQHLR 150.07 4.5637e-13 363890000.0 34701.0 88176.0 107554.0 109420.0 117291.0 115549.0 115944.0 68588.0 70717.0 95789.0 True False 34514.17367164356 91110.88485648233 122696.66832387305 123272.56078091475 132227.3136117766 107561.36960308842 110335.345770908 73706.38484280702 53289.74290925172 89675.66401091106 0.3848778155402801 1.0160045745007993 1.3682270399352074 1.3746489880009796 1.474506100068444 1.199448822480993 1.2303822557420174 0.8219218185419734 0.594249772187556 1.0 16.452428902327195 1.667010506306854 4.940121909220685 0.7708296820121375 1.1757767603487925 0.2109587843970141 0.30088795873217294 0.22370087972823754 12.334012298513828 0.16989595555297704 0.08174201155213937 46.452651275685476 -1.667010506306854 0.404947078336655 AHT(ph)PLNTPDPSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHTPLNTPDPSTK 13 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 AHT(1)PLNTPDPSTK;AHT(1)PLNTPDPSTK 151.44 0.00016459 1351980000.0 2363100.0 1882190.0 1697420.0 1679700.0 1794270.0 2181600.0 2069300.0 975770.0 2837200.0 1648650.0 True False 2350377.3321650894 1944837.5563421168 1936401.9817608737 1892349.8477764786 2022759.6490285057 2030791.1269340115 1969200.053506345 1048586.9122596623 2138010.07653222 1543431.7455197205 1.5228255729401534 1.2600735743498854 1.2546081077973605 1.226066428444017 1.3105598319460385 1.3157634814944035 1.275858203138912 0.6793866429814628 1.3852313733590382 1.0 20.557710254041066 1.9579043091134554 23.88544950736686 0.9838420358182719 1.3046925654925268 0.3529031937011434 0.17677328473585266 266.41119234076064 151163.21628671497 0.06875091485074743 0.04437375221912609 90.76205262975245 -1.9579043091134554 0.32085052967425487 AHT(ph)PTPGIYMGR ddPTM_BT-474_Trastuzumab_2h_R1 12 AHTPTPGIYMGR 12 0 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 AHT(0.997)PT(0.003)PGIYMGR;AHT(0.999)PT(0.001)PGIYMGR;AHT(1)PTPGIYMGR;AHT(1)PTPGIYMGR;AHT(0.804)PT(0.196)PGIYMGR;AHT(0.998)PT(0.002)PGIYMGR;AHT(1)PTPGIYMGR;AHT(0.998)PT(0.002)PGIYMGR;AHT(1)PTPGIYMGR;AHT(0.996)PT(0.004)PGIYMGR;AHT(0.998)PT(0.002)PGIYMGR;AHT(0.999)PT(0.001)PGIYMGR 202.25 5.112300000000001e-07 70479630000.0 13062790.0 11526060.0 9731740.0 9987870.0 9766980.0 11630360.0 10598650.0 6171070.0 12820160.0 9050650.0 True False 12992461.390052391 11909697.939449593 11101884.402199533 11252333.31792062 11010747.009574031 10826380.58812258 10085952.808725186 6631586.57945851 9660803.349342762 8473029.76834869 1.5333902683295415 1.4056008612100834 1.3102614655823617 1.3280176779213166 1.2995052903868078 1.2777460818755668 1.1903596569908945 0.7826700437464579 1.1401828641545724 1.0 23.01444650702643 2.054503150410813 2.961454317210035 0.9541874400384512 1.357092775980334 0.7138337706018141 0.10813035888699807 0.13025501322049793 2.256508182938675 0.050169789450536476 0.031144909887422766 113.37130621310067 -2.054503150410813 0.4029053359418827 AHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_BT-474_Trastuzumab_2h_R1 18 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 AHT(0.955)PT(0.045)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.969)PT(0.031)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.958)PT(0.042)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.997)PT(0.003)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.996)PT(0.004)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.727)PT(0.258)PGIY(0.009)MGRPT(0.003)HS(0.003)GGGGGGGGGGGGGGGGR;AHT(0.997)PT(0.003)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.835)PT(0.165)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.434)PT(0.434)PGIY(0.091)MGRPT(0.02)HS(0.02)GGGGGGGGGGGGGGGGR;AHT(0.998)PT(0.002)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.99)PT(0.01)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.872)PT(0.128)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.995)PT(0.005)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.987)PT(0.013)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.768)PT(0.232)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.351)PT(0.351)PGIY(0.298)MGRPT(0.001)HSGGGGGGGGGGGGGGGGR;AHT(0.965)PT(0.035)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.959)PT(0.041)PGIYMGRPTHSGGGGGGGGGGGGGGGGR 316.75 3.4427999999999997e-104 57008562100.0 6086675.399999999 6208101.3 5605638.4 6124955.5 6019149.0 7129592.3 6269698.2 3135809.9000000004 7995014.300000001 5442420.199999999 True False 6053905.415939615 6414734.198894019 6394863.561637573 6900374.238294166 6785651.946858757 6636740.3655560305 5966408.94549298 3369819.958058027 6024750.153467916 5095080.283345641 1.1881864620913039 1.259005519473746 1.2551055539871574 1.3543210027228647 1.3318047154309052 1.3025781727619947 1.1710137257297915 0.6613870185859493 1.182464224000768 1.0 22.28067344848702 1.960153640191707 9.22229665452061 0.9112391433172807 1.2812560071807464 0.5745984534182602 0.1273044679214828 0.27055953922097503 60.38872530305262 0.05082081115824778 0.032540374403462705 91.23335381566739 -1.960153640191707 0.37001686386346566 AHTCFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHTCFNR 7 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;K7ERN1;K7EKL1;Q9HCE7-2;Q9HAU4;Q9HCE7;Q76N89-2;Q76N89;Q96PU5-5;Q96PU5-6;Q96PU5-9;P46934-4;H0Y8X6;P46934-3;P46934-2;P46934;A0A2R8YE75;A0A2R8Y6F3;Q9P2P5 Q96PU5-7;Q96PU5-5;P46934-4;A0A2R8YE75 NEDD4L;SMURF1;SMURF2;HECW1;NEDD4;HECW2 E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase SMURF1;E3 ubiquitin-protein ligase SMURF2;E3 ubiquitin-protein ligase HECW1;E3 ubiquitin-protein ligase NEDD4;E3 ubiquitin-protein ligase HECW2 0 89.427 0.017881 50091000.0 48891.0 132220.0 125780.0 154570.0 121980.0 55694.0 70268.0 40556.0 38459.0 53411.0 False True 48627.77628830077 136620.86277132225 143488.73070064117 174138.54615158093 137513.42996789614 51844.00486957404 66868.86839017252 43582.49465919515 28981.294774197286 50002.26425254233 0.9725114855339441 2.7322935233753114 2.8696446620083926 3.4826132127152016 2.750144058944378 1.0368331443498195 1.3373168073438317 0.8716104222616126 0.5795996482844025 1.0 15.609705805475846 2.734631961696114 22.26754855737054 0.9811708128932829 2.639231902199041 0.6211301048205239 0.6218405574756026 49.5063544382264 280599.055574719 0.20359448633661828 0.19907266630666443 542.7901547100563 -2.734631961696114 1.658061089305758 AHTDFFEAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 AHTDFFEAFK 10 0 P61201;P61201-2;B4DIH5;H0YKU5 P61201 COPS2 COP9 signalosome complex subunit 2 0 ; 129.85 0.00029216 800490000.0 1357230.0 1467050.0 1322380.0 1264110.0 1191240.0 1473070.0 1510900.0 1150410.0 2008250.0 1397010.0 False True 1349922.8244824293 1515879.8723995467 1508559.6096669908 1424146.19638788 1342937.352967344 1371240.1381337917 1437811.9948014955 1236259.4358636136 1513343.6966713043 1307851.6257595653 1.0321681740453013 1.1590610452612804 1.153463879200257 1.0889203089538342 1.0268269936105343 1.0484676633998233 1.0993693523655275 0.9452597003468396 1.157121853017841 1.0 20.318767447375176 3.4169649429508273 4.512518463255839 1.040865018008471 1.1198162774307825 0.19836010385472236 0.0619771852236928 0.2806942185498968 11.624798021948909 0.016827895785720814 0.023457426122302068 2611.950504441573 -3.4169649429508273 0.0789512594223114 AHTDVGPGPESSPVLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHTDVGPGPESSPVLVR 17 0 P10586-2;P10586;H0Y6Z7 P10586-2 PTPRF Receptor-type tyrosine-protein phosphatase F 0 179.17 7.888e-14 0.0 56494.0 72093.0 65736.0 66816.0 72675.0 69527.0 70918.0 48990.0 70769.0 69040.0 False True 56189.84258107343 74492.57192386124 74991.05741244525 75274.8987492012 81929.73047152697 64720.762138953425 67487.42540693133 52645.88256617939 53328.928206015924 64633.8080918823 0.8693568310441329 1.1525326160260259 1.1602450733807803 1.1646366038372937 1.267598690070328 1.0013453338065352 1.0441505366818613 0.8145254646196757 0.8250933958618752 1.0 15.980001374312842 2.0534432354060588 2.067011526234696 0.8649755968784445 1.1231981168661156 0.42884895970243997 0.11278133903159925 0.27167342453454724 2.2051129373777476 0.061162276136355664 0.033711350443309585 113.09495585626034 -2.0534432354060588 0.2582225199876711 AHTGERPYACGECGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHTGERPYACGECGR 15 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 0 89.23200000000001 0.003893 88122000.0 303890.0 288890.0 281590.0 307690.0 293590.0 240020.0 334200.0 325470.0 471000.0 337350.0 False True 302253.8900053531 298505.52901230735 321235.4243758436 346643.52245183376 330976.9462557353 223427.9823463062 318033.46923202043 349758.22410317225 354928.3610766513 315820.0341801343 0.9570447004415068 0.9451760392187429 1.0171470762130959 1.0975982677974085 1.0479922437946287 0.7074534803541613 1.0070085327475573 1.107460535273328 1.123831051434219 1.0 18.26874316652022 1.990468531654697 24.934115450758572 1.081086597819945 0.9641504795707303 0.20411852134629527 0.10151254749762859 721.5503360172046 1887559.2578109056 0.0417134130189899 0.02909710077090143 97.82920665988247 -1.990468531654697 -0.1169361182492148 AHTMTDDVTFWK ddPTM_BT-474_Trastuzumab_2h_R1 7 AHTMTDDVTFWK 12 0 A0A087WVQ6;Q00610-2;Q00610;J3KSQ2 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;; 233.13 5.4558e-16 15864930000.0 22563320.0 24640190.0 22549680.0 22760640.0 22727820.0 26415940.0 26708440.0 16652500.0 27586510.0 23998060.0 False True 22441841.592140526 25460323.828840632 25724478.93866783 25642134.690298986 25622073.15865676 24589868.24423412 25416450.721051056 17895194.1096816 20788184.250795428 22466483.26502714 0.9989031806804862 1.1332580862120913 1.145015828031809 1.1413506238519886 1.1404576700502935 1.094513456074026 1.131305261318581 0.7965284952958561 0.9252976536454967 1.0 24.421270977729154 1.751686651030607 24.999999999697852 0.8925836727248349 1.1157311991493877 0.6935402917184601 0.06213625646091081 1.8697878588807693 3566.5987483647673 0.02714203811972015 0.015051675424239758 56.4529512641815 -1.751686651030607 0.22314752642455282 AHTPT(ph)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 AHT(0.313)PT(0.359)PGIY(0.327)MGRPT(0.001)HSGGGGGGGGGGGGGGGGR 76.476 0.00446 221600000.0 36404.0 36963.0 27742.0 32721.0 30606.0 35586.0 40695.0 47306.0 47277.0 42376.0 True False 36208.00490886461 38193.29111039466 31647.832462213326 36863.47524504027 34503.49268402546 33126.023580433466 38726.42738000323 50836.21393500066 35626.21682934359 39671.52740008114 0.9126950052543366 0.9627381049693726 0.7977467603666956 0.9292174428596583 0.8697293738167211 0.8350075167603885 0.9761768683482558 1.2814281996840053 0.8980298759374393 1.0 15.275816323543909 1.9933540321856082 21.842619570853987 1.1005175503098514 0.8871673323320549 0.35804993547106356 0.1014816644810038 46.208510309376216 151868.8634455416 0.03753103577070736 0.02660365958629996 98.48135880627503 -1.9933540321856082 -0.21335021797779652 AHVDEFK ddPTM_BT-474_Trastuzumab_2h_R1 6 AHVDEFK 7 0 A0A087WYS1;E7EUC7;Q16851;Q16851-2 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 ;;;;; 132.09 0.0034023000000000005 3373110000.0 4900850.0 4646050.0 4194520.0 4062260.0 3913630.0 5009370.0 5042110.0 3597200.0 6676210.0 4890580.0 False True 4874464.368135625 4800690.965653463 4785071.956578584 4576541.699487096 4412007.582597613 4663084.042688592 4798203.876569314 3865641.3302114843 5030947.502130678 4578458.997363815 1.0646517465684946 1.0485385952823 1.0451271834767404 0.9995812351103672 0.9636446640972343 1.0184833030881137 1.04799537995907 0.8443105709666163 1.0988298694009047 1.0 22.12643067180417 3.7136999581495593 2.6343751596638696 0.9825089055733578 1.0554204849365054 0.12904767256424088 0.062482738991834104 0.47315861413450866 6.48637937024257 0.017634531300750184 0.03272284853289366 5172.493554386704 -3.7136999581495593 0.07291157936314763 AHVIVMAATNRPNSIDPALR ddPTM_BT-474_Trastuzumab_2h_R1 4 AHVIVMAATNRPNSIDPALR 20 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;; 212.69 8.875e-23 14982620000.0 2478750.0 2632410.0 2307500.0 2565050.0 2244920.0 2342190.0 2290820.0 1841760.0 2653060.0 2293830.0 False True 2465404.685415015 2720028.1755245486 2632375.9428504496 2889785.0669994955 2530797.2553166873 2180279.9182222094 2180004.2848177673 1979201.4834677821 1999248.9121826312 2147435.805553334 1.1480690966590965 1.2666400404102762 1.2258228795678296 1.3456910141511211 1.1785205633490738 1.0152945725240958 1.015166217858625 0.9216580436767923 0.9309935631195648 1.0 21.034183574078316 2.7251856391849114 2.357689619211372 0.9603802974972782 1.2486033610499512 0.8577366372904232 0.052933064997745014 0.10226602697658642 1.12250877973743 0.018801590696916406 0.018531429619229257 531.1114193040081 -2.7251856391849114 0.288223063552673 AHVIVMAATNRPNSIDPALRR ddPTM_BT-474_Trastuzumab_2h_R1 2 AHVIVMAATNRPNSIDPALRR 21 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 151.87 3.4793e-08 2973100000.0 489590.0 694720.0 549340.0 621670.0 542830.0 635890.0 545020.0 409790.0 763640.0 608010.0 False True 486954.1018385621 717843.3352328914 626682.2970511233 700373.3582587385 611956.1828945151 591932.4210240507 518655.30042141164 440370.61067145667 575451.1542517496 569206.2812564495 0.8554967116028194 1.2611303825536582 1.1009757230152186 1.23043856211979 1.07510440950107 1.0399260171856082 0.9111904023204854 0.7736573280593378 1.0109711948039564 1.0 19.118592056693917 2.3978450076268274 2.502615009648241 0.8892911550382896 1.1190336118164748 0.3182294587071236 0.12026230332289328 0.2649169235347847 3.394073629980656 0.04593553261693209 0.0366144231635289 249.94531898326935 -2.3978450076268274 0.22974245677818517 AHVQELLQCSER ddPTM_BT-474_Trastuzumab_2h_R1 1 AHVQELLQCSER 12 0 Q9BQS8;Q9BQS8-4 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 0 153.81 7.0961e-05 228230000.0 136300.0 172600.0 141270.0 150070.0 163410.0 139980.0 153690.0 109050.0 176730.0 147680.0 False True 135566.17594435374 178344.88666109683 161159.5880591478 169068.84661297605 184219.29489304745 130303.51207747636 146255.42754718498 117187.86474467968 133177.25956067225 138254.93596479105 0.9805521589397572 1.2899712072957408 1.1656696879176147 1.2228774722085314 1.3324608890633893 0.9424872332273211 1.0578676741380966 0.8476215617684967 0.9632730913461787 1.0 17.07697146277966 2.7202394189545114 24.655960804553516 0.952200201427741 1.202950698510053 0.5805723527628093 0.10009875627219396 454.5695367168379 611741.1301930178 0.031364153288956066 0.029624808871221337 525.0968571890918 -2.7202394189545114 0.2507504970823121 AHYTHSDYQYSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 AHYTHSDYQYSQR 13 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 0 75.89 0.017440999999999998 149100000.0 76602.0 129430.0 138470.0 121450.0 126570.0 112090.0 109630.0 61771.0 104930.0 126410.0 False True 76189.58334328237 133737.99930791286 157965.37239718402 136825.5575474511 142687.93926083457 104341.48213147826 104326.77807273026 66380.66568678246 79071.40748996385 118342.40557495407 0.643806275300247 1.130093635144232 1.3348163038407572 1.156183676364348 1.2057211324005144 0.8816914074422114 0.8815671573166832 0.5609203680141451 0.668157851835137 1.0 16.852607600949558 2.351787062868266 2.0920259810398147 0.7092267043836692 1.1099429503283116 0.3388807655397028 0.20322540724853047 0.30452516468380914 2.7303071273697013 0.08927777619701412 0.0659524459600017 224.7952151463223 -2.351787062868266 0.4007162459446424 AIAGDEHKR ddPTM_BT-474_Trastuzumab_2h_R1 5 AIAGDEHKR 9 1 H0YDU8;P53041;A8MU39;M0R196;A0A087WY80;E7EU14 H0YDU8 PPP5C;PPP5D1 Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 5;Protein PPP5D1 0 ;;;; 157.96 4.369100000000001e-05 705453000.0 1802260.0 1838660.0 1668550.0 1613730.0 1631200.0 1913830.0 1977270.0 1783640.0 2622320.0 2076140.0 False True 1792556.8324099088 1899858.6866065606 1903467.3367034087 1818028.0525405349 1838923.6511201193 1781531.4367712317 1881621.8961950878 1916744.2739403998 1976084.373287734 1943638.9677271182 0.9222684161895127 0.9774750960196307 0.9793317423190553 0.9353733294751381 0.9461240907669944 0.9165958628903935 0.9680922884538825 0.9861627111653514 1.0166931236198447 1.0 20.890328831559177 1.6828840483027614 2.3752927645949233 1.006776738190832 0.948640270762587 0.5992022546609528 0.020137965562179855 0.18833391327280063 2.325974301750109 0.014014541300559388 0.005781687651405688 48.18191402092758 -1.6828840483027614 -0.058136467428244964 AIAHYEQSADYYK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIAHYEQSADYYK 13 0 P54920;M0R0Y2;M0R2M1;M0R058;M0R027;A0A087WZQ7;Q9H115-3;Q9H115-2;Q9H115 P54920 NAPA;NAPB Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein 0 ; 187.11 7.2348000000000014e-06 974080000.0 1619380.0 1558340.0 1380630.0 1321100.0 1245730.0 1692670.0 1621560.0 1422590.0 1914290.0 1635780.0 False True 1610661.438010034 1610208.4048635757 1575010.7033489123 1488351.1245445658 1404366.3314798106 1575659.7070165891 1543118.947839244 1528750.8895656492 1442538.879671809 1531383.1199382844 1.0517690949048364 1.0514732622418275 1.0284890063385224 0.9718999152900074 0.9170574712462597 1.0289128086249828 1.007663547905264 0.9982811418394495 0.9419843152835223 1.0 20.546403829359217 3.9127007040118804 3.7231600570141454 0.9828961694279896 1.0500332900567748 0.47784534636152176 0.03071960911683359 0.21436494854681895 5.515348800909687 0.008418261121412075 0.016803154864585782 8179.009337724993 -3.9127007040118804 0.06713712062878519 AIAHYEQSADYYKGEESNSSANK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIAHYEQSADYYKGEESNSSANK 23 1 P54920;M0R0Y2;M0R2M1;M0R058;M0R027;A0A087WZQ7;Q9H115-3;Q9H115-2;Q9H115 P54920 NAPA;NAPB Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein 0 ; 394.59 1.7014999999999992e-137 2204900000.0 908750.0 815660.0 728820.0 638840.0 683890.0 993370.0 994550.0 869260.0 1295190.0 938720.0 False True 903857.3909716161 842808.7500231174 831431.5209829962 719717.0784982591 770979.3377663923 924700.6700414557 946439.8169500476 934128.5952128405 976007.7791568326 878810.0859213738 1.0285013855115033 0.9590339978170467 0.946087822958126 0.8189677042038994 0.8772991458764061 1.0522190002769127 1.0769560250981514 1.062947057820199 1.1106014766928323 1.0 19.74519190180525 2.6718669056371818 6.603379800131619 1.0665209744259658 0.9231535912197807 0.581250921618365 0.057009919198930295 0.1793955707085033 14.696556825921043 0.019711705740044615 0.01860680984306131 469.75012640538677 -2.6718669056371818 -0.14336738320618514 AIAQGIQELSAELPPEESESSRVDFGS(ph)SER ddPTM_BT-474_Trastuzumab_2h_R1 1 AIAQGIQELSAELPPEESESSRVDFGSSER 30 1 A0A0G2JRG8;A0A0G2JNY3;E9PIR1;Q6ZUM4-3;Q6ZUM4;A0A0C4DGE6;E9PNT2;Q6ZUM4-2 A0A0G2JRG8 ARHGAP27 Rho GTPase-activating protein 27 1 AIAQGIQELSAELPPEES(0.029)ES(0.029)S(0.029)RVDFGS(0.457)S(0.457)ER 59.837 0.020067 35921000.0 9811.3 13008.0 8095.2 10336.0 14609.0 7853.6 13584.0 12112.0 17429.0 14504.0 True False 9758.477050937903 13440.96341649794 9234.933795260225 11644.53654022604 16469.36955567302 7310.699117385837 12926.8900240807 13015.858943489799 13133.856486634715 13578.342302500872 0.7186795584863535 0.9898824994286947 0.6801223293331857 0.8575816017012133 1.2129145950783458 0.5384088097439806 0.9520226943829375 0.9585749610313274 0.9672650898052341 1.0 13.729019739990681 7.999999952618063 0.09114592837064114 1.097538678128184 0.26128491448611896 0.1020036284039042 0.17444465967949582 378.79611032882156 2.4758114260651496 2.9216119296612737 39.607044665119766 99999989.08990651 -7.999999952618063 -0.836253763642065 AICDHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AICDHVR 7 0 A0A5K1VW95;P40925;P40925-3;B9A041;P40925-2;B8ZZ51 A0A5K1VW95 MDH1 Malate dehydrogenase, cytoplasmic 0 ; 148.98 0.002047 364520000.0 247600.0 354120.0 542390.0 244320.0 77893.0 156926.0 282700.0 137314.0 608500.0 229106.0 False True 246266.94911094636 365906.6701299393 618753.7974616064 275250.88694930624 87812.21184201777 146078.07498406977 269024.72098112566 147561.06794636365 458543.3284822549 214484.25893248513 1.1481819241031843 1.7059837955060309 2.88484479253266 1.2833150941671159 0.4094109855850032 0.6810666466206823 1.2542865491392945 0.6879808741247189 2.137888023878685 1.0 17.710512246201947 3.4901052410330067 24.87388796895968 0.9786280456216861 1.9242646649041697 0.3076869058458299 0.5907638982045869 636.1445972175037 1218683.487513902 0.15759082312509337 0.231964179858178 3091.0443835267038 -3.4901052410330067 0.9456366192824835 AIDSSNLKDDYSTAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIDSSNLKDDYSTAQR 16 1 Q5JVF3-3;Q5JVF3-2;Q5JVF3;Q5JVF3-4 Q5JVF3-3 PCID2 PCI domain-containing protein 2 0 88.133 0.004846100000000001 0.0 49627.0 63478.0 54878.0 60156.0 50628.0 63708.0 63092.0 58039.0 73094.0 71385.0 False True 49359.81374607803 65590.82685673867 62604.345391873074 67771.74343206635 57075.17570433385 59304.0159125009 60039.9989251546 62370.16489607035 55080.96310941982 66829.14818422675 0.7385970805734151 0.9814703409944052 0.9367820343795609 1.0141045527804897 0.8540461348840734 0.8873974534138689 0.8984103577026505 0.9332778673781028 0.8242056738113598 1.0 16.028189865015534 -2.504487880974629 2.1131125064733665 2.113024111426795 0.9044301497313921 0.13810154489405724 0.07526219647116479 4674813.410827115 310936.56486200105 25018200.818008468 0.017305424856652166 0.003129767806788557 2.504487880974629 -1.208593961695403 AIEALHGHELRPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AIEALHGHELRPGR 14 1 Q96PK6;Q96PK6-2;A0A0A6YYI9;F8WDX3;A0A0A0MSL8;B8ZZ74;Q96PK6-3;Q96PK6-4 Q96PK6 RBM14;RBM14-RBM4 RNA-binding protein 14 0 ;; 133.47 2.667e-05 1430740000.0 659780.0 883760.0 695190.0 830170.0 745820.0 782830.0 733540.0 466370.0 808900.0 692850.0 False True 656227.8177884485 913175.4173557983 793066.7093001971 935269.4368807519 840795.7561785234 728714.8046836047 698055.8678050768 501172.8975788749 609557.433704677 648631.7198212713 1.0117109566724094 1.4078488446532054 1.22267642032481 1.4419113470714366 1.296260621374179 1.1234646447515706 1.0761975501250913 0.7726617158300118 0.9397589033614313 1.0 19.30704005159144 2.23869700206248 1.9053701386252797 0.8867503236325119 1.285620308307794 0.603293953964888 0.1272891564766296 0.19905589193175952 1.453437690269469 0.06060743782071212 0.03905495317375809 173.25947817935554 -2.23869700206248 0.398869984675282 AIEALKEFNEDGALAVLQQFK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIEALKEFNEDGALAVLQQFK 21 1 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ; 294.08 7.5008e-55 1682950000.0 719620.0 784550.0 789980.0 829230.0 743220.0 977310.0 1052240.0 972990.0 1563710.0 1121870.0 False True 715745.6458772984 810663.2724795099 901202.3173707462 934210.4329771335 837864.6615899309 909750.8600402807 1001339.1312528473 1045599.4545431077 1178354.6231404894 1050271.2961187698 0.6814864392869768 0.7718608282215076 0.8580662165110088 0.8894943967615473 0.7977602212744669 0.8662055826929899 0.953409976025481 0.9955517763906081 1.121952611192028 1.0 20.002330608653434 2.166072285754518 0.8873393925255461 1.064583858922803 0.7897620755667124 0.762110850417178 0.05942914400560727 0.2966327554737686 0.4389412514666661 0.04872740791136338 0.026698036144660067 146.57917930500932 -2.166072285754518 -0.27482178335609053 AIEDEGGNPDEIEITSEGNKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIEDEGGNPDEIEITSEGNKK 21 1 Q15424;Q15424-3;Q15424-4;Q15424-2;K7ES42 Q15424 SAFB Scaffold attachment factor B1 0 ; 187.83 4.3908999999999996e-17 265880000.0 309560.0 262150.0 226750.0 221650.0 216810.0 318350.0 298070.0 309230.0 451130.0 329860.0 False True 307893.36335534946 270875.5042769788 258674.42905366808 249710.86727371378 244419.4683664496 296343.21381529234 283651.2153620239 332306.31283812283 339955.0563322918 308808.0523926461 0.9970380013402836 0.8771646405533607 0.8376544168763007 0.808628095475338 0.7914931831365359 0.9596356426564135 0.9185356831348571 1.076093418754505 1.1008620199451362 1.0 18.2363508468468 1.9919450936490122 1.7486900444677729 1.068870678593634 0.8644850106812727 0.6081557878658469 0.06436442564251352 0.23156275595690182 1.320148853069454 0.04103687314070388 0.020317665994034 98.16238318648352 -1.9919450936490122 -0.20438566791236124 AIEEGTLEEIEEEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIEEGTLEEIEEEVR 15 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;K7EP28 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 0 ; 240.6 2.9605e-13 26417000.0 19613.2 20207.2 21987.8 16868.7 18802.7 22419.6 21909.5 22012.5 22839.0 24664.7 False True 19507.60471043137 20879.78443648964 25083.4911186163 19004.275690413226 21197.112392665695 20869.785822061676 20849.65378258216 23655.18452721013 17210.634476920677 23090.577729487955 0.8448296503867493 0.9042556094135744 1.0863085113103639 0.8230316241132289 0.9179983559092937 0.9038225923385969 0.9029507198495077 1.0244518263828948 0.7453531340162934 1.0 14.495016649544985 AIEEGVNHMWTVSAFQQHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIEEGVNHMWTVSAFQQHPR 20 0 D6RAY7;D6R9P4;D6RFF8;P46926;V9GYW0;V9GYK3;Q8TDQ7-4;P46926-2;Q8TDQ7-3;Q8TDQ7;Q8TDQ7-5 D6RAY7;Q8TDQ7-3 GNPDA1;GNPDA2 Glucosamine-6-phosphate isomerase;Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2 0 199.75 8.245e-22 373730000.0 157610.0 140960.0 154340.0 151130.0 148200.0 166190.0 163310.0 143750.0 173760.0 168940.0 False True 156761.44527211718 145651.7683878806 176069.73045267112 170263.0425042918 167072.39154978018 154701.67646917983 155410.0713952162 154477.35494770948 130939.176264711 158158.1045631892 0.9911692208570063 0.9209251008043542 1.1132513944761246 1.076536943677561 1.0563631374516722 0.9781457415441621 0.982624771739882 0.9767274043549937 0.8279005152871988 1.0 17.271007960823493 1.907403924157018 1.4253387122899384 0.9234062456885991 1.028398140593583 0.2852690930166908 0.06468839146252367 0.5424897869770143 2.052641222908244 0.048289784066310674 0.02127776033131727 80.79861643750952 -1.907403924157018 0.10499189490498384 AIEIYTDMGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIEIYTDMGR 10 0 P54920;M0R0Y2;M0R2M1;M0R058;M0R0I4;M0R027 P54920 NAPA Alpha-soluble NSF attachment protein 0 100.57 0.0091296 178040000.0 67923.0 80727.0 89201.0 73741.0 74038.0 82093.0 84779.0 65957.0 92562.0 78284.0 False True 67557.31011495476 83413.94939449808 101759.72545100898 83076.60303916497 83466.30044239295 76418.10413613566 80677.91588276932 70879.04626285973 69751.33536725471 73287.84809769565 0.9218078012728406 1.1381688992055536 1.3884938375507925 1.1335658665870572 1.1388832201912795 1.0427118017473682 1.100836195588966 0.9671323159656033 0.9517448960197791 1.0 16.16128638360342 2.193242610267551 1.1358439628364847 0.9681314376296586 1.1573884369252532 0.2872760940058523 0.10919604757682169 0.61986512316392 1.5213521583445109 0.07849062456994606 0.0426207046505288 156.04239602554003 -2.193242610267551 0.18925699929559459 AIELDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIELDKK 7 1 H0YDU8;P53041 H0YDU8 PPP5C Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 5 0 112.94 0.010007 554580000.0 367740.0 368790.0 289350.0 316040.0 336170.0 459150.0 436200.0 397460.0 692120.0 455010.0 False True 365760.12869975535 381064.95221173705 330087.96492471424 356050.63159568876 378979.25686430285 427410.04122284113 415099.3395541811 427120.4834609847 521556.2999328485 425970.87224634044 0.8586505616474053 0.8945798340675413 0.7749073620550825 0.8358567563976145 0.8896835008125575 1.0033785619399544 0.9744782251546245 1.0026988024053896 1.2243942811921438 1.0 18.700395257229555 2.4119814230106273 0.9548850036474514 1.0797748762094608 0.8371371310450361 0.6791697429499592 0.06763595032391781 0.33516516622657533 0.6059430802901593 0.046326318567188836 0.030788580440969562 258.2149736562168 -2.4119814230106273 -0.2426377451644247 AIELLQEFSDQHPENAAEIK ddPTM_BT-474_Trastuzumab_2h_R1 3 AIELLQEFSDQHPENAAEIK 20 0 O76094-2;O76094;D6RDY6 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 ;; 259.49 2.6963999999999995e-36 307239000.0 416780.0 393600.0 358670.0 394400.0 389950.0 468820.0 437800.0 415440.0 538440.0 475610.0 False True 414536.10278861143 406700.73806377524 409167.6183844725 444330.99956125667 439607.8210852693 436411.57688357297 416621.94144158764 446442.24236157537 405748.67672635237 445256.16260979284 0.9310058739195859 0.9134084426366351 0.9189488046301403 0.9979221780039753 0.9873144001165155 0.9801359611186988 0.9356904551295357 1.002663814341907 0.9112702098228712 1.0 18.764276053658282 3.7548464536807873 23.952542360151835 0.9739475622413213 0.9203497667210897 0.42379771092771734 0.02801938312049114 422.9182794242616 622007.7591731149 0.006812295526890154 0.012230216529270551 5686.518464677998 -3.7548464536807873 -0.053597795520231584 AIEMER ddPTM_BT-474_Trastuzumab_2h_R1 4 AIEMER 6 0 A0A087X0X3;P52272-2;P52272;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;; 129.2 0.037913 4020890000.0 2946500.0 3576020.0 3198930.0 3172400.0 3062120.0 3184880.0 3211720.0 2715750.0 3501030.0 3039680.0 False True 2930636.371386925 3695045.66395026 3649311.53840199 3574025.514726503 3452062.8313928056 2964716.742001093 3056356.833638142 2918413.0552990763 2638248.0678984863 2845685.019999026 1.0298526895249736 1.2984731753451493 1.2824017812074084 1.2559455771137054 1.2130867636903775 1.041828846539772 1.0740320211683823 1.025557303351892 0.9271047390548478 1.0 21.440344552610345 2.700723292532625 2.750432007674013 1.0148124128124305 1.2297806241501505 0.6306451950391814 0.07734962803129723 0.18046722872089224 2.7169255813083377 0.0266442634989096 0.02594513279753918 502.0226276557924 -2.700723292532625 0.21496821133772004 AIENELLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIENELLAR 9 0 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2;A0A2R8Y6Q7;A0A2R8Y7I7 A0A2R8Y430 GSS Glutathione synthetase 0 94.692 0.019891 43715000.0 51439.0 56077.0 55310.0 61181.0 37590.0 40701.0 52034.0 39532.0 80225.0 50714.0 False True 51162.05813941015 57943.48904573767 63097.167236861744 68926.50832697072 42376.863686614335 37887.43566984834 49516.91663081677 42482.07857942854 60454.62370992427 47477.38910156018 1.077608923059522 1.2204438816504668 1.3289940418140702 1.451775458408805 0.892569378572289 0.7980100925264085 1.042957870427411 0.8947854838553563 1.273335051778103 1.0 15.534952979360769 3.2258863345011504 24.999700492742278 0.9683810747232617 1.270421792125377 0.47481136873433827 0.1468819233881384 188.5527041865986 371914.74066198134 0.04288287704524556 0.051572881280829395 1682.2337216976853 -3.2258863345011504 0.30204071740211536 AIEPNDYTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIEPNDYTGK 10 0 O75223;M0QZK8;O75223-3 O75223 GGCT Gamma-glutamylcyclotransferase 0 138.66 0.00013688 121000000.0 146710.0 161130.0 124450.0 125170.0 136030.0 164010.0 161930.0 146580.0 198340.0 177660.0 False True 145920.12966101346 166493.11464485803 141971.47826120834 141016.50916603088 153352.61418702168 152672.3747380121 154096.8272673282 157518.54391815828 149461.76461983632 166321.5866976217 0.8773372871093469 1.001031302975411 0.8535962233171651 0.847854520666663 0.9220247186904363 0.9179348139311324 0.9264992616230956 0.9470721572932823 0.8986311854489633 1.0 17.343615901032596 -0.2761898440972761 0.35710286935436114 1.0225715817800831 0.9017028502737289 0.2912069763486633 0.042625606049555405 8.731616659220773 1.2998870234365223 0.3051273945401753 0.03603794304384089 0.5294319615492017 0.2761898440972761 -0.12086873150635424 AIEPPPLDAVIEAEHTLR ddPTM_BT-474_Trastuzumab_2h_R1 8 AIEPPPLDAVIEAEHTLR 18 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;;;;; 358.31 9.370899999999997e-91 5977204000.0 1225741.0 1587277.0 1426629.0 1577514.0 1483381.0 1469427.0 1491850.0 1338464.0 1624305.0 1506358.0 False True 1219141.746648627 1640108.5554157915 1627485.9627184374 1777227.110653845 1672280.777661975 1367848.9701490921 1419683.5160795627 1438346.9802624753 1224016.79732189 1410220.9427820332 0.8645040714283735 1.1630153160115777 1.1540645251713477 1.2602472823498105 1.1858289200860679 0.9699536637504821 1.0067099934559631 1.0199444190815632 0.8679610124830466 1.0 20.427489780235295 2.7296559503753772 24.484903715041725 0.9807573960353004 1.1366837483643775 0.34627166097879714 0.10400942399084954 569.9325595395661 1567123.1729390346 0.03392790330713082 0.03243193695737705 536.6065263541835 -2.7296559503753772 0.15592635232907703 AIEQADLLQEEDES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 AIEQADLLQEEDESPR 16 0 A0A2R8YGH5;H7C1E4;P61966 A0A2R8YGH5 AP1S1 AP-1 complex subunit sigma-1A 1 AIEQADLLQEEDES(1)PR;AIEQADLLQEEDES(1)PR;AIEQADLLQEEDES(1)PR;AIEQADLLQEEDES(1)PR 462.29 1.0819999999999993e-205 2824340000.0 935900.0 1145660.0 1063720.0 1041520.0 1018280.0 1019240.0 1042390.0 955820.0 1099740.0 1069900.0 True False 930861.2183882645 1183792.6005339043 1213482.5299800148 1173376.3252105473 1147951.9221815816 948782.337832885 991965.613383502 1027148.1419556158 828723.8127610111 1001618.066012527 0.9293574566741316 1.1818802402862199 1.2115222070733278 1.1714807919567538 1.146097460833164 0.9472496254086323 0.990363140445887 1.0254888333281815 0.8273850491337348 1.0 19.933901058583967 2.74117734987341 24.558335778265874 0.9678181482052307 1.1381054360583192 0.48036157911394994 0.08779187924287093 160.36234958512622 1505024.509386081 0.02729478451930403 0.027764582500659347 551.0326719177199 -2.74117734987341 0.17028728785308844 AIEVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AIEVGR 6 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 127.54 0.039587 2834500000.0 1642950.0 2086400.0 1928670.0 2019310.0 1980730.0 1862650.0 1957190.0 1725250.0 2165460.0 1990440.0 False True 1634104.5397489062 2155844.5627445667 2200209.971699842 2274954.4389554835 2232964.224793495 1733889.3897064696 1862513.2425081348 1853996.9156419903 1631811.398677377 1863408.4150985812 0.8769438446817661 1.1569361527384294 1.180744894072748 1.2208565875963 1.1983224969365414 0.930493484765518 0.9995196047290582 0.9949493093514375 0.8757132282195088 1.0 20.829512482928067 2.733154249461055 24.783422984109166 0.966037748741701 1.1366638657855157 0.42441709857916987 0.09655623494884215 393.1441621543431 1802215.530860463 0.031326695644327295 0.030347054008578945 540.9464181269976 -2.733154249461055 0.1706261170438147 AIEVLSDEHAR ddPTM_BT-474_Trastuzumab_2h_R1 4 AIEVLSDEHAR 11 0 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 0 ;;; 186.87 3.8374e-06 880370000.0 532872.0 724924.0 648555.0 696877.0 681513.0 692414.0 685206.0 549903.0 705241.0 694171.0 False True 530003.0763596452 749052.6571141885 739865.9066588844 785101.556747591 768299.640905975 644549.0499472348 652059.9680388877 590939.5542108547 531443.8052952416 649868.4124703071 0.8155544510079745 1.1526220427714868 1.1384857187418527 1.2080931180563617 1.1822387827490832 0.9918147082994047 1.003372306649357 0.9093218609665155 0.8177714058682974 1.0 19.309788100431717 2.2137986433184094 1.7567606261949418 0.9050976176340175 1.1070568901754514 0.3260059491976899 0.1130754211477919 0.392195515060353 2.4014001319504263 0.06012864264839826 0.03677630719656589 163.60578022536825 -2.2137986433184094 0.20195927254143387 AIFEIVLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIFEIVLNR 9 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 111.74 0.0050459 0.0 66946.0 83696.0 69825.0 74554.0 70861.0 73805.0 76407.0 59925.0 79824.0 70382.0 False True 66585.57017439987 86481.77076469967 79655.75307022002 83992.52875580611 79884.72832394725 68703.03406828229 72710.90150691498 64396.90779298431 60152.44478679956 65890.16050293816 1.0105540746319883 1.3125141918700183 1.2089172717475476 1.2747355312947026 1.212392377165101 1.042690343199554 1.1035168369892294 0.9773372427907918 0.9129199918114823 1.0 16.007775420602577 2.281398602625368 1.1911100566629051 0.9611307593952625 1.2144266117027855 0.5817657125864502 0.0846235605279706 0.3151155566278944 0.8702446291248996 0.052223843235114774 0.030881706015945407 191.1606957993243 -2.281398602625368 0.25329585230752305 AIFFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIFFNR 6 0 Q99623-2;Q99623;F5GY37;J3KPX7;F5H0C5;F5H3X6;F5H2D2;F5GWA7 Q99623-2 PHB2 Prohibitin-2 0 ; 109.15 0.069328 662220000.0 930850.0 1156300.0 1106960.0 1071810.0 981470.0 1311620.0 1105830.0 896270.0 1343320.0 1273300.0 False True 925838.4070271574 1194786.746501889 1262810.3461311953 1207501.036104845 1106454.386871543 1220950.796621373 1052336.7782191667 963154.2185668413 1012276.7855657896 1192036.9038730245 0.7766860271012025 1.0023068435380902 1.0593718550392377 1.0129728636601572 0.9282048091603398 1.0242558704805236 0.882805536305159 0.8079902689568378 0.849199200357657 1.0 20.184997469730337 2.10609279367043 6.350970816543831 0.8599158357967189 0.9730242068626686 0.15631907966918435 0.08694135068926692 0.28148461888429227 14.913430830262111 0.0323870672067729 0.02380042807206388 127.67115686593921 -2.10609279367043 0.11310837106594962 AIFQEVHVQSLPQVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIFQEVHVQSLPQVDR 16 0 Q96T76-5;Q96T76;Q96T76-8;Q96T76-9;Q5T454;Q96T76-7;B0QZ77;F8WCH8 Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog 0 126.88 6.9218e-05 203590000.0 95776.0 143500.0 137970.0 126660.0 130990.0 152740.0 129000.0 114900.0 131910.0 167680.0 False True 95260.35265771399 148276.31075241833 157394.97674326194 142695.1430132576 147670.80006144196 142181.44331128563 122759.7771721446 123474.42145037794 99402.54800344177 156978.5188419294 0.606836867620321 0.9445643381418712 1.0026529610828592 0.9090106344865276 0.9407070543845562 0.905738214121234 0.7820164063068935 0.7865689035753443 0.6332238878080882 1.0 17.260207626671335 2.236028941005515 24.458853876637814 0.7830612615938973 0.8966120641361941 0.08188479382722369 0.13008542937480308 96.92819753812424 936414.0508112799 0.04587523711633858 0.03547583221160776 172.19833226294585 -2.236028941005515 0.11355080254229677 AIFTGHSAVVEDVAWHLLHESLFGSVADDQK ddPTM_BT-474_Trastuzumab_2h_R1 4 AIFTGHSAVVEDVAWHLLHESLFGSVADDQK 31 0 Q16576;E9PC52;Q16576-2;Q5JP01;Q5JP02 Q16576 RBBP7 Histone-binding protein RBBP7 0 ;;; 203.99 2.4116e-26 1558620000.0 941750.0 1272570.0 1025840.0 1112670.0 870970.0 1137800.0 1103170.0 454966.0 1260340.0 974160.0 False True 936679.7226382608 1314926.7231651903 1170269.3552388768 1253533.9079153745 981882.8668563566 1059146.5640931032 1049805.4525813546 488917.8731905363 949746.0946907566 911988.2747796628 1.0270743040688362 1.4418241544639132 1.283206580174087 1.3745066056010746 1.0766397924288889 1.1613598479092222 1.151117269391417 0.5361010516375984 1.0414016506080805 1.0 19.798655750552733 1.9238529668420379 7.98004788849215 0.8141373246764023 1.2328155746637837 0.4693752235847677 0.17369142238028804 0.23286392886031393 22.203812918443422 0.07181664914610071 0.04504461900741592 83.9175830108121 -1.9238529668420379 0.41867824998738135 AIGDHFYK ddPTM_BT-474_Trastuzumab_2h_R1 5 AIGDHFYK 8 0 O15355 O15355 PPM1G Protein phosphatase 1G 0 ;;;; 108.46 0.0038063 3259210000.0 6501410.0 7089230.0 6611180.0 6078530.0 5896510.0 7243550.0 7153820.0 6190300.0 8798320.0 7010870.0 False True 6466407.130934563 7325190.735019969 7541976.678593295 6848071.274754285 6647395.59714707 6742820.437982611 6807762.396353726 6652251.619706476 6630091.927447819 6563430.274292206 0.9852176165049448 1.1160613320920683 1.1490906985229783 1.0433677190991069 1.0127929023918698 1.0273317695463369 1.0372262844047457 1.0135327628545348 1.010156526445739 1.0 22.646018583293756 3.4902607421976026 21.38893233100849 1.0198451424672537 1.0883024232377916 0.35360213958469666 0.040034587150188754 94.13945271094832 153242.6178631768 0.01067173814140296 0.015696820909415172 3092.151344547892 -3.4902607421976026 0.06845728077053792 AIGGIILT(ph)ASHNPGGPNGDFGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIGGIILTASHNPGGPNGDFGIK 23 0 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 AIGGIILT(0.693)AS(0.307)HNPGGPNGDFGIK 167.0 4.164999999999999e-11 60200000.0 81709.0 63573.0 55471.0 63191.0 49754.0 79268.0 72853.0 65924.0 110160.0 69131.0 True False 81269.08782272326 65688.98887430993 63280.834637424654 71190.97412088068 56089.876984937706 73788.38973680111 69328.82206451352 70843.58363528906 83012.54406837336 64719.00039397322 1.2557222350160282 1.0149876925544579 0.9777783070227628 1.1000011385761475 0.8666678509169453 1.140134879828466 1.0712282582005017 1.0946334647326563 1.282661097406314 1.0 15.981901704594925 1.8789375902193075 1.7294330416175856 1.1399982626521346 1.0464518681783854 0.06079901621156569 0.11582638576473096 0.8609532448708177 4.8346617761960315 0.07526307644540203 0.03381218046781013 75.67241430490002 -1.8789375902193075 -0.09354639447374913 AIGGIILTAS(ph)HNPGGPNGDFGIK ddPTM_BT-474_Trastuzumab_2h_R1 5 AIGGIILTASHNPGGPNGDFGIK 23 0 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 AIGGIILT(0.025)AS(0.975)HNPGGPNGDFGIK;AIGGIILT(0.002)AS(0.998)HNPGGPNGDFGIK;AIGGIILT(0.114)AS(0.886)HNPGGPNGDFGIK;AIGGIILT(0.003)AS(0.997)HNPGGPNGDFGIK;AIGGIILT(0.003)AS(0.997)HNPGGPNGDFGIK 285.26 1.7766e-52 19561077000.0 13144619.0 9506266.0 9678336.0 9318733.0 6912275.0 12477607.0 12455928.0 9351237.0 16648792.0 12713743.0 True False 13073849.831808455 9822676.31715086 11040961.58319543 10498483.642328788 7792512.248986218 11615059.397217508 11853387.176374232 10049073.789559333 12545920.29398314 11902341.036957009 1.09842675413298 0.8252726322201028 0.9276294091148137 0.8820519937826335 0.654704164902544 0.9758634340213 0.9958870393285847 0.8442938879298414 1.0540716532174472 1.0 23.504742025159956 -0.15469309732905875 8.15283525438759 0.9999999993036126 0.9067969393475703 0.03348821612352115 0.12094170868432992 0.0 0.0 0.11153204535546521 0.02628835539268186 0.7003367277915901 0.15469309732905875 -0.09320305995604228 AIGPHDVLATLLNNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIGPHDVLATLLNNLK 16 0 O75533;H7C341 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 185.95 1.5795999999999998e-09 614930000.0 560580.0 653800.0 577910.0 540220.0 499370.0 585080.0 627300.0 556630.0 803310.0 619930.0 False True 557561.8995662932 675561.3377695538 659274.7047162309 608611.7966099947 562961.8095021176 544634.7967301757 596955.1024812886 598168.5571098676 605345.0143025158 580365.536651225 0.9607081474608032 1.164027315728669 1.1359646000352137 1.0486697747797946 0.970012473088032 0.9384340770349328 1.0285846846209845 1.0306755300484727 1.0430409389837743 1.0 19.146602326063068 3.4787218279611465 6.679006569801532 1.0043396078320062 1.0944975368736167 0.30780802921762795 0.057253705975116725 0.15921462446225107 37.226881585930656 0.015835008152448902 0.022705305149129707 3011.0767671901936 -3.4787218279611465 0.09015792904161057 AIGSASEGAQSSLQEVYHK ddPTM_BT-474_Trastuzumab_2h_R1 4 AIGSASEGAQSSLQEVYHK 19 0 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 ;;; 357.72 4.4287999999999984e-91 2792750000.0 1736860.0 1935800.0 1804750.0 1740940.0 1785530.0 2094440.0 2064410.0 1962340.0 2338740.0 2132650.0 False True 1727508.938743287 2000231.932784191 2058843.1128317884 1961342.8254974016 2012906.6618345403 1949656.2925814379 1964546.6014879607 2108779.775360612 1762388.864510417 1996542.451146475 0.8652502919491138 1.0018479354824623 1.031204275997006 0.9823697083781712 1.0081962748543956 0.9765163227367825 0.9839743704722425 1.0562158466250928 0.8827204568069164 1.0 20.92907231668076 4.739986052230997 24.42592615641542 0.9965859827484917 0.8652502318243185 0.4303676482285118 0.04319443764337197 77.51505788800984 1328092.4118806424 0.009674267099890365 0.060759039878723435 54952.32251275471 -4.739986052230997 -0.13133575092417327 AIGSTSKPQES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 AIGSTSKPQESPK 13 1 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 AIGSTS(0.002)KPQES(0.998)PK;AIGSTSKPQES(1)PK;AIGSTSKPQES(1)PK;AIGSTSKPQES(1)PK 184.66 4.695300000000001e-07 1975050000.0 2637720.0 1442032.0 1143547.0 1138237.0 1134086.0 2247410.0 2145380.0 1833535.0 3714680.0 2129240.0 True False 2623518.808598242 1490029.1633932479 1304548.47771129 1282337.6874939299 1278505.1298456427 2092051.8365340887 2041599.7732525207 1970362.6922020756 2799246.888161811 1993350.0802659236 1.3161355020229313 0.7474999891611964 0.654450259704134 0.6433078164187092 0.6413851447885578 1.0495155152350348 1.0242053282382593 0.9884679624058904 1.4042926608197073 1.0 20.926763673736318 2.6377685360025658 6.392648213601796 1.0812919200502211 0.7813774664578103 0.3133388943764285 0.21567062851808638 0.307046999414545 16.551548422962156 0.07122738713182433 0.0670367036594903 434.27870689178803 -2.6377685360025658 -0.29991445359241087 AIGSTSKPQES(ph)PKGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIGSTSKPQESPKGK 15 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 AIGS(0.013)T(0.01)S(0.039)KPQES(0.937)PKGK 117.65 0.00018412 534490000.0 1122200.0 634840.0 526930.0 588600.0 557750.0 1054800.0 1167600.0 934730.0 2181300.0 1147200.0 True False 1116158.1998881402 655970.2656311159 601117.1638423352 663116.6996494819 628776.1564567476 981884.1587321198 1111118.7273348514 1004484.2990627649 1643747.8429225038 1073984.7138326662 1.039268236793587 0.6107817524610694 0.5597073739505692 0.6174358825676916 0.5854609924687578 0.9142440726443186 1.0345759236829986 0.9352873333533033 1.5305132575458709 1.0 20.034542028723152 2.160959778429433 1.2497081981828886 1.1802465449202375 0.6701342375521325 0.5305350259260032 0.19641253991078256 0.36140421483209595 1.0734545692796633 0.1299972051585543 0.06922737498334783 144.86376837971127 -2.160959778429433 -0.510112307368105 AIGTEPDSDVLSEIMHSFAK ddPTM_BT-474_Trastuzumab_2h_R1 3 AIGTEPDSDVLSEIMHSFAK 20 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 ;; 328.83 9.0591e-80 765352000.0 962786.0 1046670.0 965766.0 1022962.0 948722.0 1109868.0 1099778.0 1082381.0 1340826.0 1164258.0 False True 957602.46715158 1081507.7782246242 1101737.458211444 1152468.884313344 1069536.1231841468 1033145.4375082483 1046577.5365800519 1163153.7664393515 1010397.3984479022 1089954.0576685776 0.8785714043763468 0.9922507931554289 1.010810914882111 1.0573554694392222 0.9812671604451797 0.9478798030424845 0.96020334913812 1.0671585267798798 0.9270091627615499 1.0 20.055835894995568 4.737337463277661 5.096888976628151 0.9985139204299441 0.873089229698212 0.39862899058804013 0.04215524797072706 0.15979957159570493 13.589838448126262 0.010209082473283806 0.07059155724980083 54618.210044410924 -4.737337463277661 -0.12542469073173212 AIGVKPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIGVKPPR 8 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 116.88 0.0019933 12091600000.0 2759800.0 3129400.0 2719500.0 2635100.0 2758300.0 2984500.0 2862700.0 2802500.0 3206800.0 3044400.0 False True 2744941.5434426083 3233560.187237755 3102381.961682251 2968703.3898171107 3109553.1552750277 2778188.5397573155 2724220.264424012 3011636.7808066467 2416527.1089184848 2850103.7855580277 0.9631023113444869 1.134541206401945 1.088515434912427 1.041612380875408 1.0910315515637272 0.9747674992871771 0.9558319518847386 1.0566761800279467 0.8478733725990781 1.0 21.442583024806343 2.7300000502987953 24.0986966089964 0.9767158468379533 1.067837648987042 0.3574980541941263 0.06406892595258491 449.22140492276344 1264590.4146464267 0.01983501326709339 0.018999206093989522 537.0318585678056 -2.7300000502987953 0.09112180214908872 AIHSWLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIHSWLTR 8 0 P28070 P28070 PSMB4 Proteasome subunit beta type-4 0 ; 178.83 0.00024754 4236600000.0 1278460.0 1775680.0 2091500.0 1512890.0 945070.0 1196820.0 1560620.0 1072370.0 2272100.0 1312890.0 False True 1271576.9134102608 1834782.4353787717 2385965.020356106 1704421.7188798932 1065419.0626312487 1114086.6504112405 1485126.8484526526 1152395.6947845237 1712171.3995801688 1229100.2361783215 1.034559164486058 1.4927850319870706 1.9412289983564393 1.3867231237213842 0.8668284581442994 0.906424567841028 1.208304094929151 0.9375929325078501 1.393028289461464 1.0 20.229171145197938 3.3945304844033126 6.12529244068687 1.0476691881640108 1.5173013399029962 0.3963473208709716 0.2503121951087144 0.19473910816956413 11.412285956653188 0.0699745986490955 0.09527828432575706 2480.450041645134 -3.3945304844033126 0.4696321517389854 AIHYALNCCGLAGGVEQFISDICPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIHYALNCCGLAGGVEQFISDICPK 25 0 A6NNI4;A0A2R8Y478;G8JLH6;P21926 A6NNI4 CD9 Tetraspanin;CD9 antigen 0 142.45 3.472e-07 186750000.0 42361.0 54435.0 50506.0 28702.0 43224.0 65115.0 39069.0 38367.0 55887.0 44388.0 False True 42132.93308274955 56246.83606834761 57616.80579397829 32335.670257117636 48728.32019128007 60613.7533142226 37179.08321192645 41230.140363678394 42114.39769743268 41555.11983752127 1.0139047426042207 1.3535476804848674 1.3865152120667086 0.7781392613846071 1.1726189307552404 1.458635026230697 0.8946932016390535 0.9921795563311204 1.0134586992432741 1.0 15.342738616091674 2.1913325097057634 24.999990803400657 0.9734848640727559 1.1900428367385516 0.24842797414702134 0.1863676249924583 181.40921119128436 96026.98203543392 0.07110349421553999 0.05251354753159682 155.35760220759866 -2.1913325097057634 0.21655797266579568 AIIEEYLHLNDMK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIIEEYLHLNDMK 13 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 178.58 1.4475e-05 1314320000.0 1864920.0 1772700.0 1519270.0 1436990.0 1454670.0 1698190.0 1543810.0 1560160.0 2368500.0 1923150.0 False True 1854879.4779320925 1831703.2478802197 1733170.0102684326 1618912.7866620964 1639913.6019954055 1580798.122409273 1469130.0123730889 1676587.061531954 1784814.911273988 1800412.9205084483 1.030252258692002 1.0173795283378297 0.9626513954248751 0.8991897182146998 0.9108541620176127 0.878019761135043 0.8159961504598606 0.9312236334420856 0.9913364267403417 1.0 20.779896392574283 4.061905981998773 2.3286284942396693 0.9083857902768245 1.0284072642452926 0.4011294442597786 0.050483129875449485 0.27262562942931584 2.928489954112597 0.013690428754260003 0.038005931149837975 11532.035801558071 -4.061905981998773 0.12002147396846807 AIIESDQEQGRK ddPTM_BT-474_Trastuzumab_2h_R1 4 AIIESDQEQGRK 12 1 Q12765;Q12765-2;Q12765-3 Q12765 SCRN1 Secernin-1 0 ;;; 173.19 5.4101e-05 1448550000.0 914769.0 1025460.0 868399.0 940335.0 958650.0 1180603.0 1186407.0 1044370.0 1531750.0 1264390.0 False True 909843.9853443904 1059591.8161963404 990662.0309405797 1059381.3145852801 1080728.3951362811 1098990.6934505275 1129015.960895135 1122306.1926034037 1154270.7368984288 1183695.5477012598 0.7686469608771529 0.8951556996679346 0.8369230017502797 0.894977865417 0.9130121315696919 0.9284403372005332 0.9538060382905784 0.9481375466714609 0.9751415717834082 1.0 20.174866629764832 7.99999999998555 0.19527824019974552 1.008060799034957 0.015097448524222061 0.8680040425490703 0.02349276654606669 16.577610337646988 0.19707389543179482 0.041339808535464796 5.006921887580182 99999999.99667281 -7.99999999998555 -0.992963350510735 AIIGLYNYAHEMTHGASDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIIGLYNYAHEMTHGASDR 19 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 240.59 1.4458999999999999e-24 444440000.0 90326.0 126860.0 119200.0 112990.0 115640.0 116870.0 119090.0 61395.0 112000.0 96310.0 False True 89839.69485216204 131082.45841151048 135982.3238950265 127294.52241487445 130366.0685480202 108791.05198238806 113329.16173202086 65976.60665749304 84399.10072311023 90163.41334486056 0.9964096468768285 1.453832031737099 1.508176308442494 1.411820135158297 1.4458865709685473 1.2065986406956422 1.2569306942557181 0.731744775512692 0.936068163261491 1.0 16.46025451265596 1.8786246944563212 4.478277664534745 0.8717474860402084 1.3502304279269417 0.6291154681411398 0.1538394832499352 0.13595184142560673 4.122669059154092 0.07303182295713971 0.04187303567274803 75.61791430233622 -1.8786246944563212 0.47848294188673335 AIIVEFAQQGLNAALFYENKDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIIVEFAQQGLNAALFYENKDPR 23 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 ; 184.45 3.0415999999999996e-17 582520000.0 635690.0 720700.0 595130.0 613650.0 618840.0 726380.0 727160.0 720490.0 902470.0 783100.0 False True 632267.5156717983 744688.0638276496 678919.1310373076 691338.0270810486 697645.6058479489 676167.0603145981 691984.4927790439 774256.6223740879 680068.3609784401 733121.8875543602 0.8624316452766067 1.0157766075050265 0.926065832384477 0.9430055749492087 0.9516092994784844 0.9223119262886025 0.9438873733363116 1.0561089984053675 0.9276334161118792 1.0 19.48369355267508 1.9205165661015955 15.042225910733583 1.0006296287290155 0.940261399986397 0.24111741692683308 0.04563641727635165 3.417745314839341 644.8738619374785 0.017471010417715253 0.011240821246923572 83.27536906511719 -1.9205165661015955 -0.06036822874261849 AIIYQYMEEIYHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIIYQYMEEIYHR 13 0 E9PNM1;P37268;A0A1W2PQ47;P37268-4;P37268-3;P37268-2;P37268-5 E9PNM1 FDFT1 Squalene synthase 0 ; 192.86 2.356e-06 304970000.0 331060.0 500680.0 470460.0 453000.0 482140.0 440370.0 427060.0 417080.0 420730.0 422620.0 False True 329277.6097442237 517344.8311325491 536696.6786883746 510349.753552864 543537.6711323287 409928.25841947604 406401.4762723724 448204.6274893261 317046.7289931622 395648.029776814 0.8322488296731062 1.3075885438488966 1.3565003192133334 1.2899084922544757 1.3737909207811287 1.0360932636280726 1.0271793252745993 1.132836748213202 0.8013352907937114 1.0 18.593858047436708 2.6436995820034843 7.4841294662327975 1.0188379197552073 1.246022490448463 0.3321436897650112 0.16319725632107604 0.344779338718899 23.9947489494112 0.052845534187963714 0.04977073546315988 440.25022034495873 -2.6436995820034843 0.2271845706932556 AIKVEQATKPSFESGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIKVEQATKPSFESGR 16 2 P38159;P38159-2;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 ; 157.84 1.6092e-08 3099000000.0 1758830.0 2040750.0 2038950.0 2091750.0 1880090.0 2061780.0 2549830.0 2056510.0 3229510.0 2355720.0 False True 1749360.6547043833 2108675.1300905766 2326016.437128894 2356565.3355280403 2119508.3173335134 1919254.00150807 2426484.9816034795 2209977.218946186 2433640.533716889 2205375.932766639 0.7932256032692867 0.9561522363424219 1.0547029205179144 1.068554934564709 0.961064408948453 0.8702616061926323 1.1002591193418256 1.0020863953900931 1.1035037145181377 1.0 21.07259317073506 4.677947376678788 2.9212662782841163 1.0176537862734696 0.769823869559248 0.5152183489464355 0.06630027355319655 0.273318295320904 3.56633200415789 0.0164601359485563 0.14748109978930868 47637.326131496084 -4.677947376678788 -0.2478299167142216 AILELHYSQELSLLYLLQDDVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AILELHYSQELSLLYLLQDDVDR 23 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 171.58 5.9975e-12 67386600.0 31271.9 48903.7 50455.3 53587.4 50935.4 51112.200000000004 55256.3 51267.5 53599.6 51062.2 False True 31103.53556503473 50531.43009158909 57558.967674670595 60371.55934556006 57421.721272231305 47578.93391917696 52583.34166943542 55093.34118109008 40390.69677784304 47803.36667945118 0.6506557534661034 1.0570684368410939 1.2040776973018716 1.262914383214592 1.201206635868906 0.9953050846443688 1.0999924340483525 1.1524991858946323 0.8449341455108316 1.0 15.544824606975299 4.729140388914011 4.080582204035093 1.1102197774436884 0.6152109308791656 0.5567932496524215 0.11757620645157676 0.1534067706141919 5.539533335654754 0.02834124799805364 0.22052656213613792 53596.98857559774 -4.729140388914011 -0.4950088465645228 AILIFNNHGKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AILIFNNHGKPR 12 1 F5H459;Q92572 F5H459 AP3S1 AP-3 complex subunit sigma-1 0 115.57 0.00056179 353550000.0 198910.0 238480.0 218040.0 248750.0 213360.0 238290.0 229170.0 205620.0 284700.0 223070.0 False True 197839.0906609784 246417.66263579566 248738.1367623458 280241.7244950876 240530.13131620197 221817.5731743241 218084.17158558435 220964.40851720382 214539.49978454917 208833.4816201649 0.9473533129175925 1.1799720079560347 1.1910836080143563 1.3419386696085591 1.1517795396127535 1.0621743767016019 1.0442969675822624 1.0580889941733729 1.0273232918405422 1.0 17.67199350768067 2.7371574005167907 3.991108716725471 1.0420540658793895 1.1763233142424756 0.3157329927373791 0.09090920311107395 0.27149624210348144 10.236744566916856 0.030453748495008124 0.03041190359792291 545.9556949150726 -2.7371574005167907 0.13426924836308607 AILILDNDGDR ddPTM_BT-474_Trastuzumab_2h_R1 8 AILILDNDGDR 11 0 F8VYZ4;F8VVA7;P61923-5;P61923;P61923-4;F8VXB1;F8VUC5;F8W156;F8W651;F8VXR1 F8VYZ4 COPZ1 Coatomer subunit zeta-1 0 ;;;;;;; 255.39 4.2662e-20 3019440000.0 2470470.0 2913730.0 2562850.0 2717860.0 2625460.0 2711770.0 2614940.0 2413820.0 2839350.0 2599920.0 False True 2457169.2640150194 3010711.741663021 2923677.003308461 3061940.797331535 2959796.768679394 2524311.722719952 2488445.3621591288 2593951.505529604 2139630.237840742 2433990.8796965 1.0095227901270565 1.236944545181876 1.2011865071873322 1.2579918942479091 1.2160262363219938 1.037108127140852 1.0223725088359488 1.0657194844760673 0.8790625534749487 1.0 21.214892331524837 2.6630607461484126 4.528768823286358 1.0085897104068586 1.1922942092989703 0.5795712953679415 0.07808460349521541 0.16634250514905766 6.416459819839466 0.025586690568857616 0.024231298348021294 460.32095563253785 -2.6630607461484126 0.1837044988921117 AILILDNDGDRLFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AILILDNDGDRLFAK 15 1 F8VYZ4;F8VVA7;P61923-5;P61923;P61923-4;F8VXB1;F8VUC5;F8W156;F8W651;F8VXR1 F8VYZ4 COPZ1 Coatomer subunit zeta-1 0 ; 230.26 3.2089e-13 679930000.0 515330.0 780100.0 657530.0 794740.0 678520.0 754990.0 811270.0 670730.0 1203850.0 906000.0 False True 512555.5205385461 806065.156919591 750104.5086467855 895354.0025134719 764925.500096876 702799.3183552937 772025.7707476405 720783.2784979284 907177.2982635372 848178.3043343765 0.6043016166757336 0.9503487094640619 0.8843712516738375 1.0556200246316338 0.9018451617872558 0.8285985561807413 0.9102163622936594 0.8498015981009752 1.0695596593636774 1.0 19.694008054954846 4.741120041258692 24.81861309063981 0.9268043422429312 0.6043014898664855 0.6192249521181907 0.07820293751642479 142.6984777662467 1383651.7402531935 0.01825709618774345 0.12437556523559863 55095.996356669406 -4.741120041258692 -0.3225028523764457 AILQNHTDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AILQNHTDFK 10 0 K7EQA8;Q86X55-2;Q86X55-1;Q86X55 K7EQA8 CARM1 Histone-arginine methyltransferase CARM1 0 97.472 0.0060357 512120000.0 386150.0 407120.0 340710.0 378700.0 345640.0 435630.0 393490.0 354690.0 517110.0 410170.0 False True 384071.0113052978 420670.74309076264 388679.00649559137 426643.3811710139 389655.2052312146 405515.9234627171 374455.3854222261 381158.7688793255 389675.16941899544 383992.59943579545 1.0002042015122623 1.095517839950194 1.0122044202588323 1.1110718847131058 1.014746653460872 1.0560514032263801 0.9751630265073272 0.9926200906980142 1.0147986445352057 1.0 18.550718981059905 2.2467613321776696 24.974449288984438 0.9940626435430299 1.0501331893782047 0.359196724825283 0.03437518244722952 171.6819664441233 522840.03891453287 0.011057465900902674 0.0091056487092084 176.50675559872366 -2.2467613321776696 0.05607054583517479 AILVDLEPGTMDS(ph)VR ddPTM_BT-474_Trastuzumab_2h_R1 1 AILVDLEPGTMDSVR 15 0 Q13509;A0A0B4J269;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q5JP53;P07437;Q13885;Q9BVA1 Q13509;Q5JP53;Q13885;Q9BVA1 TUBB3;TUBB;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain 1 AILVDLEPGT(0.007)MDS(0.993)VR 121.79 0.00011841 10252000.0 23253.0 21277.0 15286.0 17966.0 15449.0 23121.0 17149.0 17389.0 25540.0 22897.0 True False 23127.808431651163 21985.192082781905 17438.13593170618 20240.49375790453 17416.338576602935 21522.69969097967 16319.43735445818 18686.65547955283 19246.009218466403 21435.69385689205 1.0789391090419527 1.025634730070246 0.8135092826071237 0.9442425280484571 0.8124924106901815 1.0040589231525923 0.7613206954442074 0.8717541687387299 0.8978486699313625 1.0 14.387727496386905 4.367865963772919 5.4599953666744145 0.8802919452001148 1.0658649359624826 0.430211976431382 0.07599584649461943 0.1524269891266834 6.546015863711112 0.017029042142089373 0.04881107415969005 23327.379986652708 -4.367865963772919 0.18557299076236777 AILVDLEPGTMDSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 AILVDLEPGTMDSVR 15 0 Q13509;A0A0B4J269;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q5JP53;P07437;Q13885;Q9BVA1 Q13509;Q5JP53;Q13885;Q9BVA1 TUBB3;TUBB;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain 0 ;;;;; 314.78 6.508099999999997e-56 1965026000.0 1870630.0 2593357.0 2301081.0 2451992.0 2351174.0 2412092.0 2344890.0 2171294.0 2620619.0 2434750.0 False True 1860558.7359265292 2679675.3200275865 2625053.203445399 2762413.935791597 2650582.072399889 2245349.757493814 2231458.7123503103 2333326.9838875285 1974802.5619455064 2279362.170505653 0.8162628826615049 1.1756250738482372 1.1516613013117867 1.2119240950545316 1.1628613068593152 0.9850781005967587 0.9789838320670576 1.0236754009872437 0.8663838452260602 1.0 21.120198743633317 2.7205187477713357 19.8653935534466 0.9772234997447008 1.1163451743868944 0.26246902245315107 0.1100620610237947 77.30808089954883 85120.08657182212 0.03529735334926749 0.03341657781230378 525.4346967635211 -2.7205187477713357 0.1391216746421936 AIMEMPSFYSHGLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIMEMPSFYSHGLPR 15 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 261.67 5.8367999999999985e-25 1580650000.0 1128400.0 1437610.0 1468400.0 1681340.0 1439180.0 1458220.0 1425860.0 1284090.0 1519350.0 1447440.0 False True 1122324.819777026 1485459.9797964038 1675137.9564383978 1894197.4716083237 1622451.042311826 1357416.6836806536 1356885.704485844 1379915.3162768993 1144926.5507469429 1355063.1399842687 0.8282454054429194 1.0962293460463022 1.2362065700184606 1.3978665758927764 1.1973250503520165 1.0017368516838354 1.001345003378659 1.0183402349007287 0.8449248724751193 1.0 20.369928645715067 2.6792818590331318 5.482386436259476 0.9785480371795173 1.1664416185425146 0.28131756960447796 0.14121156184836758 0.3025624901440942 19.264736955590372 0.0493532382089649 0.04680301016148089 477.83929285228095 -2.6792818590331318 0.18789358136299728 AIMTYVSSFYHAFSGAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-3;P12814;P12814-2;P12814-4;H9KV75;G3V2N5;G3V2W4 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 156.11 1.3922e-08 210790000.0 86256.0 99626.0 100910.0 89885.0 81926.0 103210.0 110980.0 89253.0 118210.0 99800.0 False True 85791.6072799425 102941.9911848112 115117.25087455656 101264.43178388319 92358.790486554 96075.3356302068 105611.47341522934 95913.51207755064 89078.72943284693 93430.6785569212 0.9182380841607106 1.101800744410685 1.2321140406191438 1.0838456206029736 0.988527450651938 1.0283060886866446 1.1303725397957716 1.0265740713754616 0.9534205553112525 1.0 16.511608725358506 1.476742003657073 5.432698956035202 0.9793937730553973 1.072843454915078 0.17523428580155442 0.07984931462664738 0.27858543041743605 18.45518848410656 0.05067739562028619 0.02115757948341566 29.973813700063385 -1.476742003657073 0.09344968185968072 AINCATSGVVGLVNCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AINCATSGVVGLVNCLR 17 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 203.85 2.1669e-11 107220000.0 60058.0 84068.0 67694.0 81846.0 81616.0 77879.0 71666.0 69943.0 99615.0 87177.0 False True 59734.6544010711 86866.1525598209 77224.72679320414 92207.6952081406 92009.31382406803 72495.40803744674 68199.24178929377 75162.50182335752 75066.21802261272 81613.2892240153 0.7319231337081529 1.064362843180935 0.9462273549744422 1.1298122656843956 1.1273815171389223 0.8882794545684656 0.8356389313276893 0.9209591052879709 0.9197793488823625 1.0 16.316516467243417 2.6386635197936434 24.292819946068676 0.902767128253984 1.007798061839226 0.12468402205709861 0.11272808704367487 59.4173200361411 14436.73747417666 0.036193492108388785 0.03412355281695909 435.1745809550804 -2.6386635197936434 0.10503093358524196 AINQIAAALFTIHK ddPTM_BT-474_Trastuzumab_2h_R1 1 AINQIAAALFTIHK 14 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 111.12 0.00067027 47273000.0 108220.0 135430.0 130990.0 105310.0 100060.0 110550.0 124110.0 115700.0 160670.0 132080.0 False True 107637.35554437232 139937.70568083614 149432.2534145093 118642.2352023225 112802.0478979151 102907.93870670837 118106.32515375866 124334.12151269558 121075.03136769748 123650.54132062285 0.8704964361237308 1.1317193130435317 1.2085046439629819 0.9594962863501427 0.9122648934097435 0.8322481859571531 0.9551622167792362 1.0055283234895043 0.9791710580041284 1.0 16.915909030047143 3.515608452158471 24.471459623172656 0.9459873801314699 1.0776568538690858 0.2664153040031709 0.09202226029222778 538.9287980690649 342667.5013948985 0.025050650853445676 0.03879789044976273 3277.9962481350926 -3.515608452158471 0.13166947373761595 AINVLLEGNPDTHSWEMVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AINVLLEGNPDTHSWEMVGK 20 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 ; 268.3 5.012699999999999e-37 3848800000.0 1070220.0 1132180.0 1036600.0 1096700.0 1098060.0 1334070.0 1116050.0 1083680.0 1565130.0 1285420.0 False True 1064458.0544326196 1169863.926882738 1182544.2697112798 1235542.1075528155 1237891.432288473 1241848.8809629872 1062062.3977749767 1164549.7044155404 1179424.683167514 1203383.3950965705 0.8845543812304288 0.9721456450617365 0.9826828877062755 1.0267235800221959 1.028675846228652 1.0319644479250354 0.8825636136434699 0.9677295774237323 0.9800905413630592 1.0 20.198664924293237 4.745942656588327 3.269354937597195 0.9842111992267106 0.869775052249423 0.35575596018594224 0.04115646834861604 0.43176211922909785 7.350194514286553 0.010949091071298775 0.12626014271092778 55711.21840494977 -4.745942656588327 -0.11443614697728766 AIPELDAYEAEGLALDDEDVEELTAS(ph)QR ddPTM_BT-474_Trastuzumab_2h_R1 6 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9J013;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 1 AIPELDAYEAEGLALDDEDVEELT(0.001)AS(0.999)QR;AIPELDAYEAEGLALDDEDVEELT(0.011)AS(0.989)QR;AIPELDAYEAEGLALDDEDVEELT(0.016)AS(0.984)QR;AIPELDAYEAEGLALDDEDVEELT(0.001)AS(0.999)QR;AIPELDAYEAEGLALDDEDVEELT(0.016)AS(0.984)QR;AIPELDAYEAEGLALDDEDVEELT(0.005)AS(0.995)QR 186.85 5.4942e-18 166025000.0 88292.29999999999 109058.49999999999 88154.3 90918.0 95023.19999999998 109481.8 102639.79999999999 94357.6 124380.1 113993.3 True False 87816.94406699666 112688.44624524453 100565.65918908839 102428.2094779674 107123.84127336767 101913.580858436 97674.7207518873 101399.04325018443 93728.29096295111 106718.14999942588 0.8228866792337488 1.0559445253300472 0.9423482246424756 0.9598012098084387 1.0038015208654196 0.9549788940211602 0.915258751696996 0.9501574310530115 0.878278821020186 1.0 16.70344603660992 -0.04073217941322056 7.882331711498979 0.9999999989662359 0.9476534515497649 0.06963847871482665 0.060451808320064464 0.0 0.0 0.05353235784932311 0.012617697749387096 0.9104745707205737 0.04073217941322056 -0.052346547416471045 AIPELDAYEAEGLALDDEDVEELTASQR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9J013;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 0 126.59 3.4802e-05 15273000.0 5905.5 7400.6 7835.9 9767.8 9850.1 7955.4 9473.3 6038.6 9997.0 9765.8 False True 5873.705444162728 7646.924497242833 8939.126609136229 11004.4024784849 11104.451848883205 7405.461922997261 9015.040287479658 6489.2309953894855 7533.373302936907 9142.538283077978 0.6424589388960429 0.8364115369794631 0.9777510722248496 1.2036484986727447 1.2145917802101582 0.8100006468339443 0.9860544203753232 0.7097843940561313 0.8239914419478569 1.0 13.158379047321551 AIPGDQHPES(ph)PVHTEPMGIQGR ddPTM_BT-474_Trastuzumab_2h_R1 10 AIPGDQHPESPVHTEPMGIQGR 22 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.997)PVHT(0.003)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.594)PVHT(0.406)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.987)PVHT(0.013)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR 281.11 7.3191e-46 16085100000.0 3894100.0 4914130.0 4539140.0 4756160.0 4597430.0 4984410.0 4848900.0 3608740.0 5190600.0 5004920.0 True False 3873134.598275187 5077693.846395686 5178211.457087845 5358289.368339928 5182885.459397477 4639849.4687390635 4614340.1824031845 3878042.503610416 3911446.1804765696 4685501.72067241 0.8266211025357085 1.0837033361855202 1.1051562384966378 1.1435892435380361 1.1061537842427018 0.9902566993558173 0.9848123973671248 0.8276685688750283 0.8347977257631319 1.0 22.159772108387074 2.1001043619606623 2.179828491514135 0.8727824302110874 1.0589194396297885 0.336117152073779 0.0951529513519127 0.3078659895698668 2.8425605959092235 0.04916151306689084 0.028871120336262067 125.92279708110821 -2.1001043619606623 0.18613700941870115 AIPPERHS(ph)PHHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 AIPPERHSPHHLK 13 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK 96.773 0.0020476 732490000.0 831760.0 846680.0 759040.0 756510.0 696940.0 800450.0 809890.0 437087.0 1061650.0 714750.0 True False 827281.8965772241 874861.2319711315 865906.2343060479 852284.0884332824 785691.1779129808 745116.7755566224 770712.5266197519 469704.6514228137 800020.5828811608 669134.0430717381 1.2363470445764346 1.3074528803750272 1.294069915096539 1.273712042090659 1.1741910100794954 1.113553828670974 1.1518058819451271 0.7019589815914604 1.1956058597894268 1.0 19.351935719539707 2.451726496171273 1.3263634338892698 0.9448771105847504 1.2757818308293667 0.47043619475215825 0.1250483125910592 0.32389527281581065 1.14945101786637 0.06615154567849424 0.0473689500171334 282.96094431981595 -2.451726496171273 0.33090472024461626 AIPVS(ph)PSAVEEDEDEDGHTVVATAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 AIPVS(0.984)PS(0.016)AVEEDEDEDGHTVVATAR;AIPVS(0.985)PS(0.015)AVEEDEDEDGHTVVATAR 313.05 9.603299999999993e-75 2943900000.0 547970.0 715640.0 567300.0 675680.0 583640.0 613390.0 611740.0 460230.0 555410.0 529230.0 True False 545019.7904051897 739459.6447864851 647170.908940005 761221.0187209686 657963.0944946951 570987.7930647465 582147.7991262609 494574.69960058684 418536.6476127026 495454.0883034015 1.1000409589342932 1.4924887335547867 1.306217718691417 1.536410813215087 1.3280001316525172 1.1524534897269643 1.174978293386835 0.9982250853841453 0.8447536461872994 1.0 18.918391849414988 2.1199787248709643 1.1637460947974105 0.9262954511070642 1.3663995993705664 0.6600348610184579 0.12309977383176074 0.2753643158637362 0.7002160789303182 0.08458819160976562 0.043199158140947984 131.81921616473352 -2.1199787248709643 0.4401041482635022 AIPVSPSAVEEDEDEDGHTVVATAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 0 110.94 0.0027104 379610000.0 92945.0 202700.0 194600.0 196470.0 190810.0 189940.0 186660.0 198290.0 130210.0 188770.0 False True 92444.59444716031 209446.7469652627 221997.9885064781 221343.08185547704 215108.52248052365 176809.8948706663 177630.54268955428 213087.40669621766 98121.49022460887 176722.53698587223 0.5231058586180812 1.1851728168773774 1.256195119721631 1.2524892729056505 1.2172104709979357 1.000494322265196 1.0051380300394546 1.2057738097843884 0.5552290720704911 1.0 17.431126509371342 1.2516540439777106 24.964978340084723 0.7776144250746116 1.0988959133508363 0.21399174654940245 0.23024276533894214 270.31615137923717 515412.39023667324 0.1502272553847657 0.05412069134393393 17.850650377011267 -1.2516540439777106 0.3212814882762246 AIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAK 39 1 Q15417;E9PDU6;Q15417-2 Q15417 CNN3 Calponin-3;Calponin 0 72.113 0.0018107 98484000.0 99952.0 95467.0 91192.0 77206.0 68077.0 122310.0 116020.0 103450.0 156960.0 131800.0 False True 99413.86953771122 98644.56138397979 104031.04094492672 86980.2716838904 76746.20242600811 113854.99758677065 110407.66936055967 111169.9643084561 118279.31115624463 123388.41116034282 0.8056985952150987 0.7994637458763572 0.8431184093110554 0.7049306402921408 0.6219887403062244 0.9227365561812484 0.8947977230785903 0.9009757339689796 0.9585933560854517 1.0 16.912847375029298 2.680725063480733 18.580321539604704 0.9236666954200061 0.7596178708090952 0.662618929387609 0.06404041559021707 12.578129080935616 4040.416502885264 0.021914109048029397 0.020660798570882467 479.429842421513 -2.680725063480733 -0.16404882461091097 AIQDHLLEVEQSKDQMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIQDHLLEVEQSKDQMEK 18 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ; 269.85 2.7477e-32 383760000.0 557540.0 438020.0 434190.0 395999.0 367147.0 617690.0 537030.0 484490.0 835980.0 580400.0 False True 554538.2665885168 452599.23091131845 495320.1779528655 446132.4327973083 413900.9941992384 574990.5441858578 511051.80724617594 520645.1039903706 629963.930558087 543358.3750945599 1.0205755391034717 0.8329663287743624 0.9115902149601829 0.8210647948872943 0.7617458627139185 1.058216032992577 0.9405427995054615 0.9581983601518307 1.1593893817288732 1.0 19.05154452408799 2.7239151107439397 24.769149956940318 1.0086305478321873 0.8671916374255584 0.44469609169638247 0.08506263492453053 730.7221038877113 1235828.8603240396 0.02745588448446549 0.025988556814780805 529.559923484286 -2.7239151107439397 -0.14143891040662893 AIQLEYSEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AIQLEYSEAR 10 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ; 166.19 1.3084e-05 504060000.0 169150.0 202227.0 164594.0 189844.0 191064.0 199704.0 191431.0 166762.0 223970.0 197363.0 False True 168239.31519433163 208958.0034461971 187767.4045233054 213878.23093485617 215394.8678749475 185898.9325326502 182170.75119256426 179206.6272402777 168775.59454424088 184767.12436903486 0.9105478897766884 1.130926316896321 1.0162381709652961 1.1575556618377507 1.1657640319429334 1.006125592783242 0.9859478617457678 0.9699053760362087 0.9134503506540799 1.0 17.495348555167634 2.515703917723736 7.143169629370755 0.9695326116798043 1.0812001061953176 0.33365668526158254 0.0729036572233371 0.2596354300826085 39.74366956591225 0.02364261444985497 0.021874527136104303 327.8716888563923 -2.515703917723736 0.11166749451551328 AIS(ph)ETEENSDELSGER ddPTM_BT-474_Trastuzumab_2h_R1 2 AISETEENSDELSGER 16 0 Q00987-8;A7UKX8;F5GWH7;J3KN53;E7EPE2;Q00987-9;Q00987;Q00987-11 Q00987-8 MDM2;mdm2 E3 ubiquitin-protein ligase Mdm2 1 AIS(0.971)ET(0.029)EENSDELSGER;AIS(0.984)ET(0.016)EENSDELSGER 402.55 1.0076999999999996e-139 2798500000.0 747100.0 912250.0 892480.0 1017020.0 1005480.0 1046180.0 939710.0 993540.0 1099420.0 834320.0 True False 743077.696610614 942613.6897832291 1018133.4264247755 1145774.627722591 1133521.9180531246 973860.0390428236 894252.6372591924 1067682.999893895 828482.6724732306 781072.9833027103 0.951355010985739 1.2068189656201598 1.3035061360331173 1.4669239011158295 1.4512368783517637 1.246823356922329 1.1449027893371886 1.3669439639036993 1.0606981552095835 1.0 19.57509783423745 1.1183399196268617 5.520652007370023 1.0042468058501008 1.276343050562932 0.3061030881466822 0.14319147589263057 0.243589627153592 9.978156576709859 0.14207228461888835 0.03590252096349098 13.132273518687121 -1.1183399196268617 0.2720962447128312 AIS(ph)PTSSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AISPTSSSR 9 0 O14795;O14795-2;A0A0U1RRL2;B1AM27 O14795 UNC13B Protein unc-13 homolog B 1 AIS(0.5)PT(0.5)S(0.001)SSR;AIS(0.933)PT(0.067)SSSR;AIS(0.88)PT(0.118)S(0.002)SSR 158.85 6.9755e-05 1823980000.0 1449580.0 2235940.0 2031980.0 2293490.0 2235440.0 1890380.0 2025620.0 1653750.0 1699280.0 2026240.0 True False 1441775.6223434797 2310361.91124573 2318065.12171322 2583845.598843172 2520110.0335090472 1759702.4800758667 1927633.0219801476 1777161.222572343 1280515.2131854168 1896923.62844866 0.7600599205581043 1.2179519916335206 1.2220128881039758 1.3621242100064355 1.3285247733299843 0.927661216131819 1.0161890510882625 0.9368649301003957 0.6750483751592289 1.0 20.855230165271067 2.715098173186794 21.670260906362987 0.9185407047052113 1.1930060399689002 0.3619126439081931 0.17656461406872068 163.70294440090734 151197.2986280073 0.058240822674422627 0.05496914121978433 518.9173280319976 -2.715098173186794 0.2744653352636889 AIS(ph)SDMFFGR ddPTM_BT-474_Trastuzumab_2h_R1 7 AISSDMFFGR 10 0 Q8N6H7;G5E9L0;A0A0D9SF70;Q8N6H7-2;Q8N6H7-3;H0YDN9;E9PMU9 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 AIS(0.94)S(0.06)DMFFGR;AIS(0.617)S(0.383)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.992)S(0.008)DMFFGR;AIS(0.983)S(0.017)DMFFGR;AIS(0.886)S(0.114)DMFFGR 244.27 1.9416e-12 3077009000.0 1096920.0 975980.0 798540.0 1184104.0 1115755.0 1011152.0 689236.0 687267.0 1163090.0 954592.0 True False 1091014.3045992681 1008464.9043076308 910967.490965894 1334011.4449910831 1257839.785651991 941253.4422357793 655895.0215427921 738554.3534111124 876462.0541075206 893669.1212926711 1.2208257828368758 1.128454458456515 1.0193565708617092 1.492735301250498 1.4075005566182657 1.053246016684876 0.7339349720331118 0.8264293079107524 0.9807455950136659 1.0 19.769381250555234 2.4772002175819554 5.882294685157328 0.863182679817512 1.2464760081832447 0.5961055723256266 0.14268830303473898 0.11056217713952028 14.905143653139433 0.05219275645455286 0.04560761566321003 300.0545505718918 -2.4772002175819554 0.3832933283657327 AIS(ph)TGSLASSTLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 AISTGSLASSTLNK 14 0 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 AIS(0.658)T(0.339)GS(0.003)LASSTLNK;AIS(0.984)T(0.016)GSLASSTLNK 204.17 1.47e-08 198752000.0 401410.0 315910.0 306770.0 344530.0 293920.0 376450.0 348170.0 340710.0 528100.0 434500.0 True False 399248.85316084325 326424.87337837205 349960.5495073598 388147.46267454297 331348.96979967225 350426.897567981 331327.6869614379 366135.51029032416 397956.8311774516 406769.83800583426 0.9815104657664339 0.802480525544006 0.8603404599097644 0.9542188884441717 0.8145858882361866 0.861486926577272 0.8145335666620536 0.9001048654081198 0.9783341683552843 1.0 18.63385318172301 1.2744150589566392 3.1893095231987885 0.9971130187399522 0.8672000800472942 0.41991659768678713 0.05533305899179708 0.2152876506503218 3.7190390125171344 0.04565704496093736 0.01347384685989056 18.81113754521436 -1.2744150589566392 -0.12991293869265796 AISGVHTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AISGVHTVR 9 0 P41091;Q2VIR3;Q2VIR3-2;H7BZU1 P41091 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein 0 169.09 5.8733e-05 333260000.0 214320.0 249780.0 255680.0 304770.0 278250.0 265300.0 245220.0 228460.0 298570.0 274560.0 False True 213166.1249331904 258093.77630480126 291677.5215896008 343353.85075122776 313683.4881830387 246960.4354490251 233357.77176863016 245508.8452963736 224991.42413302677 257037.34573735765 0.8293196629528102 1.0041100275308752 1.1347670929018956 1.3358130888188864 1.2203809811495736 0.9607959292474596 0.9078749669593794 0.9551485391824581 0.8753258149612406 1.0 17.97161846263343 2.5933381820450068 6.655452380239667 0.9329108215825036 1.113301931752486 0.2949682554149522 0.1276814567209515 0.3322892230379895 17.08995065347668 0.04563359632481372 0.04289134822747404 392.04704253970925 -2.5933381820450068 0.18039111016998233 AISHEHSPSDLEAHFVPLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AISHEHSPSDLEAHFVPLVK 20 0 P30153;C9J9C1 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 90.714 0.00065961 804900000.0 432700.0 572750.0 544450.0 533620.0 567010.0 639420.0 602230.0 8162.9 733230.0 186960.0 False True 430370.39127748954 591813.6375153136 621103.8275557657 601176.2372867087 639215.3625684266 595218.4004327769 573097.8341579892 8772.05704836632 552535.2912786267 175028.05273549093 2.4588652193250513 3.381250195416874 3.5485958841946412 3.4347421907003053 3.652073782334957 3.4007028652275166 3.274319888732788 0.050118006292528355 3.1568384761363886 1.0 17.41722664391671 1.7669040418183068 24.9999999930388 1.3333501238508394 3.341116967122675 0.5579574742386253 0.7758488972548254 13.183931936797064 11635.556017941824 0.3319937002556704 0.18413126579107136 58.466088795033016 -1.7669040418183068 2.0077668432718356 AISS(ph)DMFFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AISSDMFFGR 10 0 Q8N6H7;G5E9L0;A0A0D9SF70;Q8N6H7-2;Q8N6H7-3;H0YDN9;E9PMU9 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 AIS(0.317)S(0.683)DMFFGR;AIS(0.299)S(0.701)DMFFGR;AIS(0.334)S(0.666)DMFFGR 231.07 8.983300000000001e-10 2621340000.0 901070.0 826890.0 669640.0 1001980.0 902080.0 802120.0 563110.0 590320.0 968130.0 790870.0 True False 896218.7392382879 854412.5337844393 763919.4913847782 1128830.5652646772 1016954.540952941 746671.3323873791 535870.2180109016 634372.6759842212 729547.3337773628 740395.9995021272 1.210458646239232 1.1539939901876584 1.0317715005192751 1.524630827319096 1.3735278710808585 1.0084756439654885 0.7237616334653926 0.856801868744293 0.9853474819798331 1.0 19.497937574515593 2.536682656381295 5.048632812787957 0.8700782761303917 1.2527733541288435 0.6015198350285051 0.1419127216734132 0.1472386659404514 7.742089245491408 0.05013639586862835 0.04622222640035135 344.09840249766717 -2.536682656381295 0.3826950779984518 AISS(ph)PTVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AISSPTVSR 9 0 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 AIS(0.211)S(0.789)PTVSR;AIS(0.037)S(0.963)PTVSR 222.34 4.0539e-07 893750000.0 913800.0 1065960.0 944570.0 1006910.0 990230.0 1025100.0 977360.0 875570.0 1051790.0 1016760.0 True False 908880.2023327247 1101439.8342135719 1077557.24565038 1134384.7027591905 1116329.920946956 954237.2498258404 930081.3629222262 940909.4794543731 792590.4477639303 951869.5063079679 0.9548369774529425 1.1571332277317559 1.1320430358462885 1.191743926285807 1.1727762193757874 1.0024874665089927 0.977110157178738 0.9884857884605363 0.8326671277013212 1.0 19.860404279580933 2.5702781386648623 3.8243658078643823 0.9563753972810596 1.1276735633232706 0.5441940308844412 0.07478307535956216 0.18511099668300537 4.955115331151207 0.025467144020057033 0.023437522071372414 371.77325056608674 -2.5702781386648623 0.17129816604221104 AIST(ph)PETPLTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AISTPETPLTK 11 0 A0A3B3ITS5;Q14181;E9PIQ6 A0A3B3ITS5 POLA2 DNA polymerase alpha subunit B 1 AIS(0.022)T(0.977)PET(0.002)PLTK;AIS(0.396)T(0.604)PETPLTK;AIS(0.117)T(0.883)PETPLTK;AIS(0.001)T(0.999)PETPLTK 178.71 8.2966e-05 979430000.0 3423150.0 3214550.0 2726780.0 2483640.0 2636920.0 4291040.0 4312970.0 3531000.0 5175110.0 4895380.0 True False 3404720.1407477222 3321544.353513492 3110686.922403357 2798068.5693466533 2972716.1317506516 3994410.50482165 4104335.1639545998 3794501.1500546904 3899773.483421208 4582952.65725432 0.7429097342645287 0.7247607823868408 0.678751703332452 0.6105383971003088 0.6486464849348078 0.8715801369885262 0.8955656911397241 0.8279599275476704 0.85093034449053 1.0 22.127845951807686 2.7322732589558396 24.509971221509158 0.8750753832224212 0.6794928973580147 0.7778936528647217 0.05533419485144427 192.2939893707061 749616.3916396447 0.018104356798192 0.017466225643267237 539.8501904941104 -2.7322732589558396 -0.19558248586440652 AISTPIITAQLDKDDDADYAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AISTPIITAQLDKDDDADYAR 21 1 O14802 O14802 POLR3A DNA-directed RNA polymerase III subunit RPC1 0 ; 215.11 6.0986e-25 344820000.0 286670.0 304080.0 260090.0 251650.0 255190.0 298240.0 308060.0 289120.0 425090.0 301550.0 False True 285126.60057203146 314201.1189797585 296708.4112571937 283508.86419774446 287686.93387036765 277623.37078144425 293157.96089651773 310695.60252161213 320332.2654141694 282304.8208300562 1.00999550674933 1.1129853116072128 1.0510214114827614 1.0042650471364536 1.0190648995099925 0.9834170382395626 1.0384447563968273 1.1005678245524784 1.134703489909601 1.0 18.106894239881274 1.7923815163777175 6.559492917839656 1.0881709345741364 1.0316394090229477 0.17411300001202545 0.04562823067109617 0.3146575491954226 27.408439030435826 0.02113754522641216 0.012163756547527865 61.99854769951658 -1.7923815163777175 -0.05653152555118868 AIT(ph)PPLPESTVPFSNGVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 AITPPLPESTVPFSNGVLK 19 0 Q92667-2;Q92667;I3NI36 Q92667-2 AKAP1 A-kinase anchor protein 1, mitochondrial 1 AIT(0.999)PPLPES(0.001)TVPFSNGVLK 110.12 0.00064345 0.0 67128.0 88549.0 59520.0 74030.0 75574.0 87863.0 80007.0 75605.0 90951.0 80246.0 True False 66766.59030662186 91496.29993599922 67899.89864288569 83402.19040953308 85197.9009378077 81789.23761725477 76136.75575357953 81247.02901441102 68537.34473096076 75124.6315779429 0.8887443293129571 1.2179267706766785 0.9038300383867913 1.1101843517595438 1.13408743774555 1.0887139929917293 1.0134726008551076 1.081496538590223 0.9123152192746831 1.0 16.19699839020551 1.2460998692293042 24.972768740373546 0.9561576004131 1.0597676460144587 0.14063607188540106 0.09692403635071839 255.95510892325217 847838.3249872278 0.06124791221637507 0.021397071942655627 17.623812724303107 -1.2460998692293042 0.10361004560135867 AIT(ph)PPQQPYK ddPTM_BT-474_Trastuzumab_2h_R1 4 AITPPQQPYK 10 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 AIT(1)PPQQPYK;AIT(1)PPQQPYK;AIT(1)PPQQPYK;AIT(1)PPQQPYK 160.52 8.2186e-05 5409010000.0 2596340.0 2739230.0 2556230.0 2374490.0 2336570.0 2870030.0 2872020.0 2630130.0 3570230.0 2826220.0 True False 2582361.593920494 2830403.614650499 2916124.964850538 2675100.190538052 2634118.339564577 2671631.5814239136 2733089.4204181563 2826403.6561295246 2690394.6551309833 2645848.2199513232 0.9760051897338249 1.0697528275838026 1.102151265844035 1.0110558006941408 0.9955666843251644 1.0097448376963456 1.0329728666251452 1.068241040743268 1.0168363532132163 1.0 21.335298872586975 -3.14860164723253 1.2689588575665727 4.682451551787174e-05 1.03487050521294 0.054727143648088505 0.036598005977315426 550031.3895081315 7969.0092575557455 1586104.9767960082 0.011666974128890964 0.000710228920473408 3.14860164723253 1.0348236806974223 AIT(ph)PPQQPYKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AITPPQQPYKK 11 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 AIT(1)PPQQPYKK;AIT(1)PPQQPYKK 74.475 0.023863 1047060000.0 1988810.0 1636300.0 1746240.0 1582710.0 1732340.0 2008450.0 2175200.0 1748150.0 2692700.0 1964130.0 True False 1978102.4679375626 1690763.2563357637 1992095.4134098256 1783080.9237210862 1952943.2306163728 1869610.5788827543 2069977.2659290577 1878605.8299258316 2029120.1653314207 1838777.541823708 1.075770408842209 0.9195039736339486 1.0833803263847004 0.9697099747871721 1.0620878198672334 1.0167682258227202 1.125735560091758 1.0216601993423422 1.103515851797347 1.0 20.810315520133933 3.2031721182461403 24.99895370980094 1.0567648007647423 1.0105698405070487 0.11868299490409517 0.05704407851522421 334.1358326369413 236037.46624589022 0.015046331813334361 0.017984459572142494 1596.5117464721866 -3.2031721182461403 -0.04619496025769365 AITFFTEDDKPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AITFFTEDDKPLLR 14 1 Q9Y2R4;A0A087X121 Q9Y2R4 DDX52 Probable ATP-dependent RNA helicase DDX52 0 ; 102.5 0.001067 684130000.0 278630.0 309580.0 265280.0 241100.0 240403.0 331360.0 279160.0 236540.0 429040.0 303960.0 False True 277129.88703870296 319884.1831549381 302629.11814490496 271623.23527946026 271016.89706978324 308453.8631375386 265655.964305239 254191.81592578223 323308.8408414577 284561.01256675174 0.9738856512316296 1.124132151026488 1.0634946629377586 0.954534259030806 0.952403474478812 1.0839638935610765 0.9335641657618924 0.8932770291789514 1.1361670311937642 1.0 18.118378487567544 3.750604104212732 23.486357452397552 0.9819859915148116 1.060866974811207 0.1023590459116952 0.07610098965913771 586.7838337737251 1144296.1222560366 0.019535710195943738 0.034827241216216186 5631.240870207482 -3.750604104212732 0.07888098329639537 AITHLNNNFMFGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AITHLNNNFMFGQK 14 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ; 229.32 1.3271e-12 4465300000.0 6235100.0 6802200.0 6478000.0 6255200.0 5907200.0 6806800.0 6938200.0 6237900.0 8577300.0 7152000.0 False True 6201530.914384737 7028607.114983274 7390046.09221462 7047107.678639903 6659446.905282472 6336261.937483696 6602572.759502122 6703403.7734143725 6463539.344931546 6695553.236864743 0.9262163550937074 1.0497425479771836 1.1037244915813826 1.0525056600012606 0.9946074162500158 0.9463388182170159 0.9861131001317884 1.0011725000566654 0.9653480625535523 1.0 22.674771836091928 3.1274356307006075 5.309400513263246 0.9811827191428588 1.039029017796375 0.24092376053579834 0.044143346890697925 0.28849873388156416 12.341145524804865 0.01326479990247328 0.016018194688349176 1341.0211601652954 -3.1274356307006075 0.057846298653516204 AITS(ph)AYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 AITSAYYR 8 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907;P57735 H3BMH2;P57735 RAB11A;RAB11B;RAB25 Ras-related protein Rab-11A;Ras-related protein Rab-11B;Ras-related protein Rab-25 1 AIT(0.363)S(0.637)AYYR;AIT(0.117)S(0.883)AYYR 118.21 0.002025 136659000.0 232090.0 302900.0 278620.0 266770.0 305140.0 328510.0 257230.0 256480.0 308930.0 262480.0 True False 230840.45322762316 312981.8433930835 317847.2741915458 300543.0546474554 343997.7702935221 305800.87692935974 244786.80218597455 275619.83997905045 232798.34094991488 245728.3016795659 0.9394133750561758 1.2736906626295632 1.2934907050553108 1.2230705726333833 1.3999110722789325 1.2444674660557804 0.9961685345678291 1.121644670537233 0.9473810682722582 1.0 17.906704503652303 2.2447803448498806 24.93921758480023 1.035555618380665 1.2414679659361936 0.43405388667229317 0.11765838591322296 139.9131541871566 561010.6336629615 0.04128971896817589 0.03373757833515857 175.70347255230396 -2.2447803448498806 0.20591234755552867 AITSLLGGGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 AITSLLGGGSPK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 AITSLLGGGS(1)PK;AITSLLGGGS(1)PK;AITSLLGGGS(1)PK;AITSLLGGGS(1)PK 241.07 3.263e-16 7391980000.0 8707320.0 7198990.0 6455700.0 6320460.0 5850960.0 8466380.0 8625290.0 8154510.0 12500970.0 7850000.0 True False 8660440.756594198 7438604.03026864 7364606.446049691 7120629.587948642 6596045.074643069 7881119.078314797 8208051.7708924515 8763040.94396276 9420273.447915882 7349006.279276883 1.178450586035743 1.0121918185380259 1.0021227586669503 0.9689241398565368 0.8975424464179526 1.0724060884991204 1.1168927415449283 1.192411682743182 1.2818431621809423 1.0 22.809117753574963 2.2296020516003012 2.559686322954287 1.1737948365595527 1.0083152657337244 0.31149560049745184 0.09335593698098199 0.2907901828103791 3.8993556238989275 0.03997369649396613 0.028008868494463986 169.66882474561248 -2.2296020516003012 -0.16547957082582831 AITVFSPDGHLFQVEYAQEAVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AITVFSPDGHLFQVEYAQEAVKK 23 1 O14818;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3;F5GY34 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 0 ; 301.36 3.9812e-62 1133100000.0 1057740.0 1129660.0 1103130.0 987870.0 1071450.0 1480990.0 1443280.0 1277050.0 1956650.0 1477830.0 False True 1052045.2453659612 1167260.0502061106 1258441.1154221517 1112934.2407114068 1207892.806518299 1378612.6471754662 1373463.032534981 1372349.9557285053 1474459.8252667305 1383513.6241660838 0.7604155296989461 0.8436924868807703 0.9095979204257423 0.8044259350046016 0.8730617360174964 0.9964575867523013 0.9927354588667958 0.9919309298856327 1.0657356743815694 1.0 20.39990542029775 2.7889808506387754 3.0374254832098644 1.0083922517275716 0.835945125863955 0.8217715707232688 0.04022011314875581 0.11147356566629432 2.0552626405018684 0.013406070264054874 0.013835888396218727 615.149748293294 -2.7889808506387754 -0.17244712586361666 AIVDALPPPCESACTVPTDVDKWFHHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AIVDALPPPCESACTVPTDVDKWFHHQK 28 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ; 132.35 1.2341e-05 4583300000.0 2034060.0 1963510.0 1753640.0 1738250.0 1640250.0 2231150.0 2385790.0 1387140.0 2867000.0 2190400.0 False True 2023108.8469653125 2028864.2433831398 2000537.269087874 1958312.2717732098 1849126.1149765674 2076915.8520621615 2270380.2230971344 1490655.430554197 2160466.265831758 2050606.7967042143 0.9865903352202396 0.9893970148952888 0.9755830675598983 0.9549916029346326 0.9017458236988819 1.012829887914266 1.1071748258838043 0.7269338192724295 1.0535741270847792 1.0 20.96761945127915 1.761338583081227 24.99999999998868 0.898561304266952 0.9853650256112807 0.06204376980836035 0.09348524475857262 22.24799664822613 24437.157133157623 0.04151324185019563 0.023022460916843606 57.72162952858241 -1.761338583081227 0.08680372134432868 AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK 32 0 O00148;O00148-2;O00148-3;K7EPJ3;A0A0G2JJL7;F6QYI9;K7EIL8;K7ENP6;K7EN69;K7EL56;F6SXL5;Q13838-2;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;F6R6M7;F6U6E2;F6S2B7;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ;;; 252.91 2.5427e-59 2324039000.0 545955.0 665566.0 622046.0 647057.0 670338.0 803444.0 757121.0 464866.0 866368.0 706998.0 False True 543015.6389413025 687718.9619668566 709624.6698792425 728974.3498557513 755701.5708953886 747903.8073837404 720496.1647469077 499556.6614617173 652863.2151364251 661876.7823485595 0.8204180195209477 1.0390437923001326 1.0721401457250965 1.101374710968267 1.141755672730969 1.1299743809262026 1.0885654006329502 0.7547577959890415 0.9863818048124438 1.0 19.336203138538146 1.764693848114536 24.9999999999991 0.88998769970547 1.0640041594054743 0.26543067446824486 0.10587836096581524 18.248715997229773 17468.717419061533 0.04905243412351994 0.0272041825708396 58.16930140833163 -1.764693848114536 0.17401645970000434 AIVEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIVEYR 6 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 106.84 0.073935 303640000.0 429670.0 541040.0 443600.0 502230.0 508200.0 530340.0 491180.0 447410.0 511490.0 487530.0 False True 427356.70446082443 559048.1893344134 506055.02415967995 565812.2665051986 572916.257662607 493678.8440860763 467419.74691018584 480798.0061019461 385440.1431148541 456415.4180045676 0.9363327521432407 1.2248670121148684 1.108759704858646 1.239687013595882 1.2552517620184196 1.0816436619175205 1.0241103356098897 1.0534219203285864 0.8444941338747606 1.0 18.79998800204725 1.9354124614833241 1.3590351632005202 0.9466155988109703 1.1558997655941194 0.4096113258733959 0.09847820575175731 0.41298183631246826 1.4159205429827888 0.07061504420626204 0.03157593792217632 86.18118501923277 -1.9354124614833241 0.2092841667831491 AIVICPTDEDLKDR ddPTM_BT-474_Trastuzumab_2h_R1 4 AIVICPTDEDLKDR 14 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;; 208.15 7.7005e-09 2741880000.0 2017350.0 1637040.0 1538800.0 1316570.0 1428320.0 1877170.0 1415520.0 1671470.0 2856050.0 1829530.0 False True 2006488.8117486548 1691527.8867884234 1755449.664510629 1483247.6270090379 1610208.085684091 1747405.6562828745 1347045.889788481 1796203.578952684 2152214.746609278 1712767.8290605647 1.1714890820019623 0.9875990534666971 1.024919802162255 0.8659945626270804 0.9401204637100601 1.0202233055961287 0.7864731383513441 1.048713987077795 1.2565712118669028 1.0 20.707898172255828 1.4752776060335449 10.06102219026632 1.1364948044441527 0.9671113312440772 0.2419851454351879 0.11179793693674082 0.1095087260877473 47.92941685016833 0.058592222172113836 0.026971904027497957 29.872915198941012 -1.4752776060335449 -0.16938347320007552 AIVQDQGCLPGLILFMDHPNPPVVHSALLALR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIVQDQGCLPGLILFMDHPNPPVVHSALLALR 32 0 Q9NVT9;E5RJ86;E9PR92;E5RHK3 Q9NVT9 ARMC1 Armadillo repeat-containing protein 1 0 159.75 4.5585e-14 258780000.0 52583.0 56070.0 58088.0 58121.0 46921.0 79281.0 72672.0 57984.0 113800.0 76305.0 False True 52299.8989705205 57936.25605496923 66266.28549005288 65479.11264071962 52896.111227444286 73800.49107739968 69156.57772600067 62311.06051678598 85755.51484187444 71435.14957200286 0.7321311606942876 0.8110328934997545 0.9276425665387591 0.9166231614692726 0.740477363655938 1.0331117316834717 0.9681029316848352 0.8722745159787161 1.200466652000741 1.0 16.12434650471767 7.1089387744509756 0.19683257395341122 1.0560440977587304 1.9116315651241844e-07 0.4353624193486223 0.10134858862515513 38.103119601389906 0.6167854898784972 0.19376449350594105 11.511878844519535 12851054.768108819 -7.1089387744509756 -1.056043906595574 AIWHAFTALDQDHSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AIWHAFTALDQDHSGK 16 0 Q9UH65;E7EMB1;E9PJK8 Q9UH65 SWAP70 Switch-associated protein 70 0 246.18 2.0489e-20 793020000.0 465500.0 484530.0 458870.0 459380.0 482480.0 563550.0 533520.0 416920.0 685800.0 523560.0 False True 462993.79972191225 500657.2881454292 523474.9074304598 517537.4608987073 543920.9681169906 524593.1149540063 507711.5993556782 448032.6874768633 516793.77924918814 490145.9525577327 0.94460394359245 1.021445317528065 1.0679980211992088 1.055884391573647 1.1097122505625994 1.0702793978334773 1.035837584103842 0.9140801533479785 1.0543671258579181 1.0 18.90285188423154 -0.5463765783473851 5.553216726194746 1.0000000078655578 1.02741390819943 0.0232275835335366 0.05621671866273148 0.0 6.6776304174892935e-18 0.06010839245099737 0.014167683758325897 0.284199573375012 0.5463765783473851 0.027413900333872254 AIYDIDRPDMISYSPYISHSAGDRQS(ph)YGEGDQDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AIYDIDRPDMISYSPYISHSAGDRQSYGEGDQDDR 35 2 Q6H8Q1-7;Q6H8Q1-2;Q6H8Q1;F5GYR0;Q6H8Q1-8;Q6H8Q1-5;Q6H8Q1-9 Q6H8Q1-7 ABLIM2 Actin-binding LIM protein 2 1 AIYDIDRPDMIS(0.035)YS(0.035)PYIS(0.029)HS(0.029)AGDRQS(0.873)YGEGDQDDR 98.987 8.8539e-05 41415000.0 12764.0 14748.0 14796.0 15665.0 14378.0 16188.0 16807.0 15642.0 19973.0 15862.0 True False 12695.280042213713 15238.878264645737 16879.148190862525 17648.187393831355 16208.953074917275 15068.96166245314 15993.981201025053 16809.285468466587 15050.921774488215 14849.673579858581 0.8549198050678374 1.0262096458009053 1.1366679610895036 1.1884562511709718 1.0915359847978314 1.0147671988488685 1.0770594461226783 1.1319632972448588 1.01355236487505 1.0 13.858143598124643 4.6751061263690294 3.069649787346392 1.0898538707306413 0.8340126286354737 0.574707491531177 0.058119772058434875 0.20976966020778232 3.1176625125410675 0.014408943187852866 0.11919025387695378 47326.68946947405 -4.6751061263690294 -0.2558412420951677 AIYHDLEQSIR ddPTM_BT-474_Trastuzumab_2h_R1 4 AIYHDLEQSIR 11 0 Q9UNF0-2;Q9UNF0;A0A0U1RR22 Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 0 ;;; 254.53 1.9387e-20 3477610000.0 1867470.0 2600160.0 2428800.0 2617810.0 2265390.0 2378960.0 2418470.0 2104030.0 2481050.0 2395130.0 False True 1857415.749015422 2686704.753770085 2770753.928491948 2949224.4775898913 2553873.9884814895 2214508.094669475 2301479.366647415 2261043.4026478534 1869628.4718667225 2242270.752826042 0.828363723102766 1.1982071078543488 1.2356910622857804 1.3152847281590956 1.1389677117550228 0.9876185076572148 1.0264056487142552 1.0083721601408533 0.8338103101556044 1.0 21.096529062532323 2.754118262330921 4.567616961322763 0.9782206342520616 1.1626764894921515 0.30326628862933047 0.12897502407798936 0.25162785245072067 14.02448952632778 0.04192926322603384 0.04261237824289862 567.6991740023026 -2.754118262330921 0.1844558552400899 AKADS(ph)PVNGLPK ddPTM_BT-474_Trastuzumab_2h_R1 4 AKADSPVNGLPK 12 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 AKADS(1)PVNGLPK;AKADS(1)PVNGLPK;AKADS(1)PVNGLPK;AKADS(1)PVNGLPK 140.78 3.6316e-05 1984810000.0 3140199.0 2417322.0 2191135.0 2033864.0 2137900.0 3305317.0 3050062.0 2909419.0 5166273.0 3018298.0 True False 3123292.517492907 2497781.101467991 2499627.762313165 2291350.973863225 2410148.8926739204 3076828.215669298 2902518.848691672 3126534.6195103345 3893114.2436614726 2825667.6375450725 1.1053290471933952 0.8839613931516914 0.8846149239564601 0.8109060469170891 0.8529484715930169 1.0888853928845053 1.0271975409016496 1.1064764227638089 1.3777679271026344 1.0 21.430160351392246 2.2190760195373276 1.3601467562332992 1.1691280722404458 0.9045954989928304 0.4310948908124461 0.12068903346091248 0.3940916247312731 1.4149765380378045 0.0735052444263746 0.04196370792557843 165.60598172179448 -2.2190760195373276 -0.26453257324761537 AKAEASSGDHPTDTEMKEEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKAEASSGDHPTDTEMKEEQK 21 2 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 111.38 0.00015007 197270000.0 144730.0 121810.0 117020.0 116680.0 114180.0 193690.0 185730.0 171710.0 314910.0 190170.0 False True 143950.78976101484 125864.3722143 133495.3988439261 131451.67603653012 128720.14620211828 180300.66619721684 176745.53034249926 184523.87212571246 237304.6500778093 178033.18778727192 0.8085615471482687 0.706971401111419 0.7498343455122363 0.7383548970296422 0.7230120844430604 1.012736268097689 0.992767317932254 1.0364577212772044 1.3329236701718759 1.0 17.44178667851114 2.4436070372270358 1.263959312661155 1.1213331604583134 0.7354325449297918 0.7538842752927623 0.09438314960704541 0.21606307930656143 0.6945277889346259 0.05109724509574651 0.03588705339412119 277.7199236740135 -2.4436070372270358 -0.3859006155285216 AKAEKPPLSASS(ph)PQQRPPEPETGESAGTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKAEKPPLSASSPQQRPPEPETGESAGTSR 30 3 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 AKAEKPPLS(0.001)AS(0.142)S(0.857)PQQRPPEPETGESAGTSR 132.82 4.7715e-06 114570000.0 101070.0 94822.0 99068.0 69567.0 80850.0 109650.0 125870.0 98403.0 147050.0 107850.0 True False 100525.85034993273 97978.09294889052 113015.91328550749 78374.17506713474 91145.76826450558 102070.15358833606 119781.18722990566 105746.33154030918 110811.49786904782 100966.92066496967 0.9956315364266629 0.9703979511666327 1.1193360413607047 0.7762361628042257 0.9027290093054058 1.0109266769363716 1.1863408970088911 1.0473364032879506 1.0975029954290139 1.0 16.623523181181703 2.4719933010934425 24.717268288342353 1.087645014824381 0.9536308905093799 0.31148781986417695 0.09094381026799662 147.16136049592106 709322.6027313533 0.03174925589965665 0.026649367922618884 296.4785657938774 -2.4719933010934425 -0.13401412431500115 AKDANNGNLQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKDANNGNLQLR 12 1 P05455 P05455 SSB Lupus La protein 0 113.77 0.0010307 320120000.0 104930.0 121330.0 116570.0 142650.0 137800.0 135000.0 173090.0 134440.0 189890.0 152230.0 False True 104365.06853881889 125368.39570446603 132982.04275539648 160709.47537376586 155348.0131954096 125667.76775581737 164716.97543198822 144472.5954724874 143094.1538956376 142514.55106933985 0.7323116675155543 0.8796883880542736 0.9331120349296447 1.1276706425266942 1.0900501880669413 0.8817890300526172 1.1557905785483327 1.0137392595244177 1.004066972964857 1.0 17.12074970377619 4.395498616819962 1.6617763198826303 1.039512403915265 0.7213612048603011 0.6184461044324345 0.07569292829476948 0.33171947965854004 1.4228028493468565 0.019921724208456046 0.1379499009008047 24859.856466254474 -4.395498616819962 -0.3181511990549639 AKDDATLSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKDDATLSGK 10 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 ; 99.5 0.0042435 733520000.0 1089520.0 1134540.0 939060.0 933230.0 996550.0 1231680.0 1245420.0 1238830.0 1778400.0 1367650.0 False True 1083654.1453770509 1172302.4780560879 1071271.485544157 1051376.8223137714 1123454.7354853821 1146536.8606628524 1185174.2766335835 1331277.785251277 1340137.149339101 1280365.406095926 0.8463631868040823 0.915599931452895 0.8366919946788195 0.8211537247945618 0.8774485237858825 0.8954762876317146 0.9256531541627651 1.0397639446621667 1.046683347549533 1.0 20.288124171995033 1.9780426108877287 1.8840191002664388 1.0364400881474967 0.8618882818612957 0.8667260462680848 0.028602784659859038 0.11318358435900726 0.746776588327008 0.01766782743415286 0.008833623546200691 95.06980670065597 -1.9780426108877287 -0.17455180628620093 AKDDIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKDDIKR 7 2 Q4VC05;Q4VC05-2 Q4VC05 BCL7A B-cell CLL/lymphoma 7 protein family member A 0 50.878 0.087238 86732000.0 221970.0 332580.0 288900.0 323800.0 306500.0 269370.0 293800.0 306360.0 378230.0 335060.0 False True 220774.93818318567 343649.72425114486 329574.60883618426 364793.04680003796 345530.95823217044 250749.08592877438 279587.77157500834 329222.13886455883 285020.2845223391 313676.1839407016 0.7038307320932012 1.0955556776223392 1.0506841950694228 1.1629606118550577 1.1015530535065767 0.7993883462194147 0.8913261059942713 1.0495605204340157 0.9086449629093305 1.0 18.258916470258473 2.7739999667587125 24.99773740931717 0.9393137824639548 1.0362751722201387 0.10507916743317536 0.1316097326795191 1408.2773292739366 993349.445141273 0.040715726040625205 0.04318384563924656 594.2921131279219 -2.7739999667587125 0.09696138975618385 AKDEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKDEVR 6 1 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8;F5H5B1;K7ELX1;K7EJ90;F5H7Q5;K7EPE6;Q9NY28 Q9NX02 NLRP2;GALNT8 NACHT, LRR and PYD domains-containing protein 2;Probable polypeptide N-acetylgalactosaminyltransferase 8 0 76.035 0.06942000000000001 71910000.0 360590.0 341810.0 330350.0 309000.0 294150.0 221470.0 359620.0 353840.0 461510.0 419540.0 False True 358648.6235053155 353186.939221492 376860.408546326 348119.36831751664 331608.2589363557 206160.3001843028 342223.8067181906 380245.33756311284 347777.0444171658 392764.59801373497 0.9131388758535044 0.8992331310092796 0.9595070697617895 0.8863308202368659 0.8442926389326957 0.5248953221010346 0.8713204001808306 0.9681252828948084 0.8854592449928597 1.0 18.583305372083938 -0.692416459697974 7.987028496946322 0.9999999710216447 0.8638476979808787 0.10964757326563246 0.11832403969162232 0.0 0.0 0.1218416785638742 0.028718359047889025 0.20304090490496113 0.692416459697974 -0.13615227304076605 AKDEYER ddPTM_BT-474_Trastuzumab_2h_R1 1 AKDEYER 7 1 Q9NPI6-2;Q9NPI6;A0A087WVE6;A0A087WT55 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 0 60.019 0.091228 105890000.0 106980.0 119740.0 92926.0 110380.0 110600.0 95448.0 129510.0 117320.0 154440.0 156440.0 False True 106404.0315665954 123725.47351564154 106009.17307272842 124354.09668248374 124684.25442244073 88849.90442042414 123245.10652375537 126075.01413888883 116380.33138997442 146455.86526497765 0.7265262567264354 0.8447969857116288 0.7238301646774583 0.8490892219133326 0.8513435375008964 0.6066667542448437 0.8415170420165294 0.8608396386910525 0.7946443877779249 1.0 17.16010644586683 0.28063013872575426 0.6005166127435163 1.00827434483888 0.7789136821545403 0.4135291351391547 0.07661941150151905 2.5564536630409984 1.3284885066195067 0.12724712630287205 0.03136341715889503 1.9082274491566973 -0.28063013872575426 -0.22936066268433974 AKDPVALHELER ddPTM_BT-474_Trastuzumab_2h_R1 1 AKDPVALHELER 12 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 0 133.77 9.4528e-05 69098000.0 98488.0 110940.0 107680.0 98104.0 103010.0 119880.0 103270.0 99888.0 129060.0 108960.0 False True 97957.7515510455 114632.5708353539 122840.40802866164 110523.95634117014 116127.71291189521 111592.97776716578 98274.4355702896 107342.14978098635 97254.8923153983 102006.07951465076 0.9603128756357722 1.1237817528208174 1.2042459489977606 1.0835036192651242 1.1384391348479992 1.0939835968417755 0.9634174358811114 1.0523112964611996 0.9534225095027786 1.0 16.638295613145957 2.3258917699297874 6.392780008935464 1.0017203125673981 1.1084480684138098 0.41260670396791954 0.06270946651470563 0.21547072214949436 12.86281695628419 0.021863146110266678 0.018162080501664242 211.7833286477185 -2.3258917699297874 0.1067277558464117 AKDQDILDLVGVLHDPETLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AKDQDILDLVGVLHDPETLLR 21 1 F5H345;A0A3B3IRR1;A0A3F2YNY7;P08397-2;P08397 F5H345 HMBS Porphobilinogen deaminase 0 ; 202.43 3.8402999999999996e-22 235490000.0 350910.0 370610.0 333950.0 329360.0 325520.0 394470.0 375760.0 346560.0 464790.0 404710.0 False True 349020.7395497658 382945.52981152426 380967.25725456496 371056.9422299585 366973.0424917985 367201.2173824982 357583.0532574028 372422.0669960224 350248.73236691416 378881.0613103366 0.9211881384165768 1.0107275578439603 1.0055062027566473 0.979349405712392 0.9685705620192392 0.9691727955801106 0.9437870872213144 0.982952448739517 0.9244292421363072 1.0 18.531385501756322 3.1723301497742593 2.910436103397808 0.9634017198254075 0.9836169264056789 0.048242694446509526 0.029623783664989002 0.6636462688677435 11.418777806228622 0.008604858676658675 0.010961648795527459 1487.0656769847303 -3.1723301497742593 0.020215206580271428 AKEAAEQDVEK ddPTM_BT-474_Trastuzumab_2h_R1 5 AKEAAEQDVEK 11 1 P26373;P26373-2;J3KS98 P26373 RPL13 60S ribosomal protein L13 0 ;;;; 188.09 3.0099e-06 2289390000.0 2632620.0 2403210.0 2204630.0 2076700.0 2079690.0 2829510.0 3057270.0 2732510.0 4895640.0 2946690.0 False True 2618446.26643158 2483199.3920788765 2515022.7410125197 2339610.007071151 2344526.1942116227 2633912.633650097 2909378.1701944363 2936423.771604633 3689175.120215071 2758629.721411771 0.9491836639429628 0.9001568325045309 0.9116927587242184 0.8481058508547569 0.8498879628585222 0.9547902037037982 1.054646133771631 1.0644501321844213 1.3373216026712997 1.0 21.395520392476772 2.0461014161796256 1.5637948014442946 1.1528933074818373 0.891726332196084 0.6149252691783429 0.08491265225307394 0.24557818997634823 1.1283868152789904 0.051957611868902374 0.0261568815570494 111.19913685034952 -2.0461014161796256 -0.2611669752857533 AKEDFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKEDFLK 7 1 P22694-2;P22694-4;A0A0A0MS54;P22694-9;P22694-6;P22694-7;P22694-5;P22694;P22694-3;P22694-10;P22694-8;B1APG3;B1APF9;B1APF8;B1APG2;B1APG1;B1APF7;B1APG0;K7ENJ5;P17612-2;P17612;Q15136 P22694-2;P17612-2 PRKACB;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha 0 90.71 0.015447999999999996 780200000.0 1587400.0 1530900.0 1401200.0 1126700.0 1119200.0 1664900.0 1750100.0 1389000.0 2190100.0 1695800.0 False True 1578853.6147767182 1581855.0810514088 1598476.780551269 1269340.1044768451 1261723.4859818777 1549809.3817530395 1665440.976968759 1492654.2331990844 1650379.2008364613 1587572.5921525748 0.994507981922241 0.9963985828872154 1.0068684660169833 0.7995477565884145 0.7947501060541229 0.976213238634756 1.0490487081983464 0.9402116417084327 1.0395614090305803 1.0 20.59839113030764 2.49359385184127 24.75305346538645 0.9991738029949744 0.9174998411865131 0.2364085711675893 0.0753114147903382 1121.086272734974 1684636.288604864 0.02730261899796836 0.02510500982224313 311.59741910102673 -2.49359385184127 -0.08167396180846132 AKEEASAMEEEMALAEEQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AKEEASAMEEEMALAEEQLR 20 1 Q92620;H3BMS7;Q92620-2 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 ;; 157.15 9.2984e-09 50104000.0 136898.0 140846.0 142709.0 147441.0 129666.0 161436.0 163866.0 152283.0 194291.0 170602.0 False True 136160.95637879762 145533.9739667952 162801.18675113557 166107.0154825335 146178.1965094048 150276.3092994679 155939.17555109016 163647.13073740544 146410.58641601607 159714.0343002793 0.8525296914283725 0.911215940442503 1.019329249707963 1.0400276732740636 0.9152495405292581 0.9409086055451614 0.976364890125485 1.0246258661886374 0.9167045780131547 1.0 17.285131564429623 4.451627180786899 4.431564759021618 0.980546965170299 0.8629145260992401 0.48711975837768107 0.041844081985492165 0.151162367811617 6.961806427868041 0.010627742038971454 0.03594080997775843 28289.62436084129 -4.451627180786899 -0.11763243907105891 AKEEELR ddPTM_BT-474_Trastuzumab_2h_R1 6 AKEEELR 7 1 O75525-2;O75525;H0YAQ1;H0YAQ3;E5RJZ9;E5RG12;Q9H6N6;Q5STV6;A0A0A0MRT5;Q9UBC1-2;Q9UBC1-3;Q9UBC1;Q07666-2;Q07666;Q5VWX1 O75525-2;Q07666-2 KHDRBS3;MYH16;NFKBIL1;KHDRBS1;KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 3;Putative uncharacterized protein MYH16;NF-kappa-B inhibitor-like protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2 0 ;;;;; 122.52 0.0039519 8988590000.0 17817600.0 18224100.0 15585700.0 15327300.0 15305900.0 18279400.0 19115900.0 17472000.0 24167500.0 18721400.0 False True 17721672.02132147 18830678.151798893 17780031.08666707 17267734.608456526 17255015.639823075 17015788.103079177 18191190.88717051 18775849.3610183 18211743.45290863 17526584.223803055 1.0111309651114715 1.0744066220401767 1.0144607106340666 0.9852310289306127 0.9845053331263968 0.9708559229681413 1.0379199195280073 1.0712783005098394 1.0390925704835887 1.0 24.06304151920498 2.0204687635032816 24.962452273699274 1.0471823604610802 1.0078812942005608 0.16077615177788396 0.03127627004783354 339.2885206770496 413773.91680898156 0.012571197564223618 0.009283469390130373 104.82593951357111 -2.0204687635032816 -0.039301066260519324 AKEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 AKEEER 6 1 A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3;H3BMZ1;H3BRL8;H3BS72;Q9P035;H3BPZ1 A0A087WY00;H3BS72 MYO5A;HACD3 Unconventional myosin-Va;Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 0 ; 67.757 0.089314 115622000.0 219620.0 175123.0 156950.0 151853.0 175000.0 198638.0 181851.0 185652.0 258010.0 204404.0 False True 218437.5903220761 180951.8631909108 179047.19576614432 171077.574230161 197285.21269373494 184906.62260355608 173054.1723917182 199506.294961754 194426.89265687193 191358.7617209315 1.1415081721767988 0.9456157719854102 0.9356623870050863 0.8940148477740067 1.0309703664441887 0.9662824996391599 0.9043441274149346 1.0425772677851275 1.0160333966856183 1.0 17.54592043346229 1.6265941862459274 23.08629726922047 1.021968617440858 0.9705125754390244 0.08447917180174724 0.06776459190984224 1.2950400472451666 1589.8742453958457 0.031027800042850856 0.017148494643302505 42.3247290185025 -1.6265941862459274 -0.051456042001833624 AKEEQQDDTVYMGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKEEQQDDTVYMGK 14 1 E7EX90;Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2;E7EWF7 E7EX90 DCTN1 Dynactin subunit 1 0 ; 123.38 9.4132e-05 214090000.0 483360.0 395360.0 381810.0 356390.0 338790.0 490850.0 494640.0 458220.0 627740.0 547700.0 False True 480757.6434663441 408519.3185998334 435565.5292479878 401508.93745850987 381932.8983343463 456918.69483661477 470712.37349170144 492414.703194013 473041.88828504714 512745.3170904392 0.9376148887997489 0.7967294970492687 0.8494773423180025 0.7830572490390796 0.7448783745146913 0.8911221216595185 0.9180237396662095 0.9603494888811627 0.92256695969319 1.0 18.967882885049786 2.377229405202623 2.7984918826263248 0.9497141623326806 0.8201924796204133 0.5697924266952938 0.05209236676516744 0.19384402945084164 3.0917920016633245 0.01992626801777513 0.01592116594451405 238.35782024778334 -2.377229405202623 -0.12952168271226727 AKEFTNVYIK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKEFTNVYIK 10 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;H0YBN4;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YCC8 P11940-2;B1ANR0 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 ; 133.05 0.00018918 1449200000.0 2851800.0 3533000.0 3248700.0 2924600.0 2864900.0 3408600.0 3690000.0 3149700.0 5735700.0 4144100.0 False True 2836446.225664764 3650593.769256404 3706088.7217933997 3294854.0601340057 3229728.0334073226 3172971.5049813325 3511500.6028311076 3384746.607852527 4322213.589442356 3879619.990057493 0.7311144475319424 0.9409668417556291 0.9552710655402304 0.8492723690923085 0.8324856665560847 0.8178562624980987 0.9051145761260679 0.8724428208244095 1.1140816885465896 1.0 21.887483916244637 1.2503205461921394 24.929781779142324 1.0570408216459573 0.8679924852153891 0.5785780559043741 0.06611233006130583 126.44586966589156 268055.22032057954 0.0437483002632348 0.015694076834672 17.79592415685557 -1.2503205461921394 -0.18904833643056818 AKEGTSDPPS(ph)PLLLPSPGGWK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKEGTSDPPSPLLLPSPGGWK 21 1 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 AKEGT(0.001)S(0.001)DPPS(0.998)PLLLPSPGGWK;AKEGTSDPPS(1)PLLLPSPGGWK 130.78 8.6499e-06 1035430000.0 1569680.0 1681140.0 1416640.0 1326620.0 1345550.0 1892930.0 1930790.0 1676760.0 2353100.0 1866050.0 True False 1561229.0172878425 1737095.7286294107 1616090.5983443812 1494569.9559785882 1516897.8168003159 1762076.204577924 1837390.31136593 1801888.3456147588 1773210.034924561 1746957.091394218 0.8936848105650099 0.9943551202182436 0.9250888910239952 0.8555275703914378 0.8683085716717315 1.0086545418076867 1.0517661369115476 1.031443963043592 1.0150278124515302 1.0 20.73641274266585 2.624383061271358 5.503912832751645 1.0284801308713694 0.9106780099030657 0.6989562167899528 0.037393213097575935 0.13853252842722505 5.803051594327934 0.013290949919915543 0.012488230481479694 421.09788609241275 -2.624383061271358 -0.11780212096830367 AKEPAGENGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AKEPAGENGGR 11 1 E7EMD0;P16435;H0Y4R2 E7EMD0;P16435 POR NADPH--cytochrome P450 reductase 0 ;;; 126.12 0.00028649 395843000.0 305088.0 417503.0 430863.0 322547.0 459706.0 530530.0 405288.0 368777.0 478905.0 450411.0 False True 303445.4401064631 431399.3349691074 491524.7652716681 363381.417128511 518246.8342090642 493855.7098332877 385682.671089489 396297.012351662 360885.27974822413 421665.38436374196 0.7196356432348295 1.0230845380396902 1.1656749249486964 0.8617767324600841 1.2290476131709402 1.171202873526066 0.914665242610446 0.9398376699800512 0.8558570210660522 1.0 18.68573906623039 AKEQEAEPEEQEEDSSSDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKEQEAEPEEQEEDSSSDPR 20 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 72.187 0.015024 388510000.0 508290.0 523850.0 512110.0 482690.0 503560.0 604560.0 608540.0 569910.0 763610.0 648130.0 False True 505553.4231163278 541286.030575988 584210.6366600841 543798.5045086797 567685.3811660416 562768.1901811636 579102.5953514485 612439.5781443418 575428.5473497702 606765.7885079902 0.8331936847650243 0.8920839652264938 0.962827251840668 0.8962247292251856 0.9355922695673967 0.9274883337852408 0.9544087790042279 1.0093508726823628 0.9483536452586148 1.0 19.210780218325503 7.999999999999909 0.22019506437786132 0.9998983269336462 0.20506018518330746 0.6870271510329611 0.027882316272177726 29.29834476904099 0.375019430143611 0.04480240541299941 8.284565159401081 99999999.99997914 -7.999999999999909 -0.7948381417503387 AKESWEMNSEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKESWEMNSEEK 12 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 115.68 0.00084209 1020200000.0 806260.0 494230.0 352410.0 345930.0 409020.0 585980.0 560230.0 501470.0 882760.0 479990.0 False True 801919.1857439067 510680.14678165544 402026.2647973686 389724.70253099786 461106.2725485227 545472.581848547 533129.53461357 538892.2378130628 665215.6263779707 449356.62725988607 1.7845940998665086 1.1364696007616748 0.8946708258179447 0.8672948809222747 1.0261477066896383 1.2138968221627497 1.1864285564553023 1.1992528987480444 1.4803734629093213 1.0 18.777501354057353 2.5939165156089876 8.359608442928025 1.224403943514657 1.112643188636692 0.013298165466774203 0.26176991703536096 1.2571308621951818 82.72791155345818 0.08744606371183895 0.08234597349015657 392.56946455144987 -2.5939165156089876 -0.11176075487796489 AKESWEMNSEEKLEQSTIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKESWEMNSEEKLEQSTIVK 20 2 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 54.17100000000001 0.061353 43092000.0 45624.0 35408.0 31447.0 32473.0 37563.0 45618.0 53617.0 52002.0 72225.0 47142.0 False True 45378.365453302926 36586.53387541199 35874.46425777601 36584.078470468296 42346.42539665583 42464.53503322133 51023.34087316951 55882.65330080553 54426.1165154164 44133.35719970326 1.028210141548172 0.8289995639773804 0.8128650647500983 0.8289439279437884 0.9595106305880703 0.9621868293651326 1.1561173704118881 1.2662225773565503 1.233219495837093 1.0 15.429581876039432 2.3389414937385498 2.1418605668377455 1.202594350283693 0.8798772016890516 0.6601573203279729 0.09151594006924228 0.16355314046653366 1.5378952655672855 0.0391597167543932 0.028782064921133492 218.2435883779593 -2.3389414937385498 -0.3227171485946415 AKEVELVS(ph)E ddPTM_BT-474_Trastuzumab_2h_R1 3 AKEVELVSE 9 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 AKEVELVS(1)E;AKEVELVS(1)E;AKEVELVS(1)E 126.66 0.0012293 6350600000.0 4476300.0 4857700.0 4439300.0 4725500.0 4771400.0 5130700.0 5048200.0 5111700.0 6742000.0 5340200.0 True False 4452200.098163684 5019385.607958334 5064314.852912685 5323747.815483564 5379009.507696498 4776026.785368683 4803999.280003249 5493161.010686662 5080524.438171511 4999383.864024766 0.8905497595816597 1.0040008417992263 1.0129877982275293 1.064880785368953 1.0759344859280546 0.9553230788571077 0.9609182672633939 1.0987676001867117 1.0162301148208737 1.0 22.25331887399382 4.813277524623449 2.1375598235753217 1.028072615502114 0.8352195379365156 0.44138037372521 0.04424758152478725 0.8286149419670688 3.5966883009066413 0.011761847132909809 0.3278023099729981 65054.52716269983 -4.813277524623449 -0.19285307756559844 AKFEELNMDLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AKFEELNMDLFR 12 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 172.57 3.2281e-05 9083500000.0 3426900.0 4368400.0 4261700.0 3388300.0 3179000.0 3958200.0 4095200.0 3601200.0 7055400.0 3977700.0 False True 3408449.9511643844 4513799.55324644 4861710.316639551 3817258.432589777 3583826.806590767 3684578.9506005663 3897099.530816789 3869939.830523073 5316691.207516353 3723839.7805196936 0.9153052096910319 1.2121358112288336 1.3055637737349317 1.0250866464660426 0.9624009135244302 0.9894568960446392 1.0465271763848323 1.0392337099914084 1.4277443501541742 1.0 21.828359571108574 -1.4455991226702363 4.732707313995602 0.9997732541452649 1.0953578483948936 0.036140948197477374 0.15494783522454392 0.00036629601935517177 4.290864077825511e-05 0.1482406137729852 0.0348579721810514 0.035842713211110794 1.4455991226702363 0.09558459424962873 AKFENLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKFENLCK 8 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 ; 123.86 0.0012125 10891000000.0 12344800.0 12458900.0 13613800.0 9414300.0 6266300.0 9727600.0 13126000.0 9479400.0 24013400.0 12127100.0 False True 12278336.96843622 12873586.954935895 15530504.70672915 10606149.414730068 7064276.161730012 9055153.908307344 12491045.2338106 10186800.96341786 18095619.33307442 11353138.09546734 1.0814927877375384 1.1339232242824195 1.3679481898427355 0.9342042108132639 0.6222311489851756 0.7975903959031864 1.100228423963024 0.897267423135183 1.593887009997612 1.0 23.43658778895402 3.7104763422906477 24.649903711589214 0.9672906951135191 1.1884016296141502 0.11747947585292973 0.24735843068015545 1163.6488113666123 1021348.2711392052 0.06680512249214335 0.1035195794448436 5134.242085278959 -3.7104763422906477 0.22111093450063113 AKGEVDVDVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKGEVDVDVPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 86.814 0.010311 0.0 232150.0 187400.0 172910.0 143030.0 151110.0 270750.0 221470.0 212530.0 338620.0 229880.0 False True 230900.13019428976 193637.4957143078 197254.22503933762 161137.58333480364 170352.96280085907 252033.68977694487 210756.65000244047 228390.06780547244 255171.63827553237 215208.8615898305 1.0729118145439822 0.8997654384853544 0.9165711094893811 0.7487497593938206 0.7915703913974373 1.1711120439701006 0.9793121363381607 1.061248436139048 1.1856929886180405 1.0 17.715377958969295 2.740171715104867 24.993335825209293 1.0730103393268766 0.8807662138550602 0.4814409815643239 0.1002580082347302 133.4624316700214 2070442.188324571 0.032216345612337646 0.03257079992928347 549.7581990378756 -2.740171715104867 -0.19224412547181646 AKGPS(ph)ESSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKGPSESSK 9 1 Q8TEA8;A0A087WZV9 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1;D-tyrosyl-tRNA(Tyr) deacylase 1 AKGPS(0.536)ES(0.148)S(0.316)K;AKGPS(0.597)ES(0.358)S(0.045)K 109.6 0.0014673 466890000.0 1525562.0 738919.0 634293.0 656220.0 690261.0 707683.0 917141.0 1061573.0 2052090.0 1267667.0 True False 1517348.5436978708 763513.4722290318 723595.9410264107 739297.3847162469 778161.6468525168 658762.5399165942 872775.386011146 1140792.9678184693 1546379.9160972065 1186763.4067556793 1.2785602716264486 0.6433577812415794 0.609722154312581 0.6229526294017651 0.6557007423912912 0.5550917193490906 0.7354249221393675 0.9612640239195764 1.3030229170316523 1.0 20.178600917175093 1.5776636439881992 3.1805397298912856 1.1500771058813408 0.7068634964428306 0.40540630298947866 0.20572438832258436 0.1894016682239974 4.412966023130347 0.13360748290742883 0.05354750596660477 37.81495988200837 -1.5776636439881992 -0.4432136094385102 AKGPS(ph)PPGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AKGPSPPGAK 10 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 AKGPS(1)PPGAK;AKGPS(1)PPGAK;AKGPS(1)PPGAK;AKGPS(1)PPGAK 77.77600000000002 0.019372 3085280000.0 7112200.0 5736150.0 4762120.0 4731070.0 4955330.0 6989010.0 7244600.0 6845640.0 11053000.0 6851470.0 True False 7073908.705439712 5927074.285174098 5432585.102910932 5330022.976912468 5586361.902957979 6505876.189059895 6894151.020940448 7356496.418255575 8329136.252611943 6414203.318761425 1.1028507133144128 0.9240546316699247 0.8469617866681466 0.8309719402442779 0.8709362060005136 1.014292167825477 1.0748257699869266 1.146907270110687 1.2985457177899824 1.0 22.612838654678384 2.258022499940814 1.8620261892209757 1.159152066349355 0.9086592718921386 0.5151497459809492 0.09854509299371621 0.26200903149466337 1.8312901802768804 0.049242680984190976 0.0321036180915003 181.14339370093285 -2.258022499940814 -0.2504927944572165 AKGSET(ph)PGATPGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 AKGSET(1)PGATPGSK;AKGS(0.001)ET(0.999)PGATPGSK;AKGSET(1)PGATPGSK;AKGS(0.022)ET(0.978)PGATPGSK 247.5 4.9817e-17 2194080000.0 4143880.0 3801260.0 3577822.0 3519056.0 3835161.0 4685360.0 4549330.0 4299790.0 7123600.0 4495540.0 True False 4121569.8105083453 3927782.6411898085 4081548.238613692 3964568.1287830584 4323546.02056982 4361472.091351085 4329261.527771717 4620662.163691216 5368084.2313495325 4208630.788374568 0.9793137050399597 0.9332685233495553 0.9698043006975299 0.9420090115137493 1.027304659870065 1.0363161585470286 1.0286627042054544 1.097901525706364 1.2754942168312087 1.0 22.004919520878943 2.278061342370583 1.0122525907277533 1.1326081862798554 0.9592364391441334 0.4808318429403169 0.06801663583810663 0.43432477476077647 0.8568635949708476 0.04632049691636403 0.027112668881917816 189.69738423098912 -2.278061342370583 -0.173371747135722 AKHDELTYF ddPTM_BT-474_Trastuzumab_2h_R1 2 AKHDELTYF 9 1 P04080;A0A1W2PQG6 P04080 CSTB Cystatin-B 0 ; 114.84 0.0014344000000000002 1267950000.0 3394000.0 3654600.0 3440900.0 3031400.0 2404300.0 3734100.0 3291500.0 3020100.0 4584100.0 3459300.0 False True 3375727.0811088523 3776241.15174765 3925348.8111610487 3415174.9291835586 2710473.353597412 3475970.4561259127 3132277.570248945 3245475.197757057 3454409.9787929445 3238524.5123442644 1.042365765101241 1.166037538809348 1.212079388684205 1.0545465739616782 0.836946993381065 1.0733191744810258 0.9671927936038963 1.002146250672582 1.066661674359972 1.0 21.62690523318456 3.482237659398 24.96462527225306 0.9899903426685848 1.141175981019203 0.45987785456823504 0.07240234160746349 179.10150794728378 873896.5033754312 0.019256254046039707 0.026830886039747245 3035.551877811643 -3.482237659398 0.15118563835061827 AKIDDPTDSKPEDWDKPEHIPDPDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKIDDPTDSKPEDWDKPEHIPDPDAK 26 3 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 ; 84.404 0.0083944 5289350000.0 1309830.0 751150.0 620440.0 565035.0 553192.0 1100130.0 1139070.0 1011490.0 2353140.0 940280.0 False True 1302778.0208157934 776151.5736702362 707792.5590388449 636568.373065656 623637.7221741307 1024080.6025274618 1083968.8324300346 1086972.5200421475 1773240.1774605338 880270.5253857914 1.4799746024039961 0.8817193706787767 0.8040625451234374 0.7231508436416982 0.7084614379208168 1.1633703196851257 1.2314042117393054 1.234816444144561 2.0144263908908973 1.0 19.747587436430994 2.0843958760890797 1.5318135959338166 1.4558715077887892 0.9100575186242682 0.31023075168396497 0.3167694366877483 0.45664629712709043 2.0283022120185437 0.1962343629393277 0.10167513090102465 121.44954052306741 -2.0843958760890797 -0.545813989164521 AKIEDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKIEDEK 7 1 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W543;F8W118;F8VUX1;H0YHC3;H0YH88;F8W020;P55209-3;F8VXI6 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 ; 90.657 0.015484 5959000000.0 806820.0 614990.0 522070.0 485420.0 444000.0 615560.0 731960.0 696590.0 1026330.0 654080.0 False True 802476.1707661283 635459.5703806938 595572.9180862127 546874.1222287654 500540.7682058193 573007.7860723782 696552.2984412619 748573.0830123479 773404.7236174094 612336.0544139384 1.3105159576699619 1.0377627869534591 0.9726242866039146 0.8930947610984199 0.8174282154345501 0.9357733910030808 1.1375327214856328 1.2224873541519627 1.2630396626859224 1.0 19.223964106071506 2.1205893306127943 5.017701947793386 1.184739458755419 0.9833764710308937 0.24029537753839403 0.1378817655174912 0.26762919975600763 10.664531637716504 0.055506469944040855 0.040415584394675685 132.00468059770586 -2.1205893306127943 -0.20136298772452532 AKIELLGSYDPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKIELLGSYDPQK 13 1 P24666;P24666-3;P24666-2 P24666;P24666-2 ACP1 Low molecular weight phosphotyrosine protein phosphatase 0 ; 127.36 0.00016223 1083020000.0 2981200.0 2808300.0 2546800.0 2505800.0 2480500.0 3368800.0 3457500.0 2970700.0 4786600.0 3588700.0 False True 2965149.550442458 2901772.567846798 2905367.3028175626 2823034.0230745357 2796376.971924626 3135922.785302207 3290247.5160673643 3192388.7189089446 3607006.567153921 3359666.093559355 0.8825726926038262 0.8637086207494366 0.8647785886779923 0.8402722010042696 0.8323377663290462 0.9334031114919202 0.979337655719695 0.950210119103476 1.0736205523723712 1.0 21.679886424618743 2.2894266732375197 1.3624144863158798 1.0079160832628231 0.855952936811318 0.815927233549074 0.0321725336437304 0.18665986873671747 0.6833474819252352 0.019274887614406943 0.011795047604603625 194.7272242577794 -2.2894266732375197 -0.1519631464515051 AKKDDTDDEIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKKDDTDDEIAK 12 2 P27824;P27824-2;H0Y9Q7;D6RDP7;D6RAU8;D6RB85;D6RAQ8 P27824 CANX Calnexin 0 ; 151.74 3.6331e-05 910700000.0 1211060.0 1089990.0 1124550.0 762130.0 1034960.0 1740520.0 1368100.0 1154790.0 2749490.0 1264670.0 False True 1204539.7875214156 1126269.6582371313 1282876.8652361748 858615.5798570499 1166756.021311476 1620201.9491433746 1301919.7763504712 1240966.2937048026 2071915.030778431 1183957.677861539 1.0173841599617413 0.9512752687844352 1.083549597442793 0.7252080001777419 0.9854710545218706 1.3684627241657648 1.0996337121627482 1.0481508899424787 1.7499907889619148 1.0 20.175186080163872 2.861730581487646 6.544242996909761 1.2252027591139745 0.9433715899136829 0.3232721992598595 0.21608294627313993 0.3190549491508996 15.762214716900234 0.06496198127869758 0.0690748015512228 727.3284597608207 -2.861730581487646 -0.2818311692002916 AKLDNNK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKLDNNK 7 1 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ; 102.46 0.0078384 2133100000.0 4757500.0 4016800.0 3882000.0 3382500.0 3334000.0 2484600.0 4753000.0 4332300.0 7540300.0 5034500.0 False True 4731886.148607944 4150496.7597931265 4428551.857051111 3810724.1531844623 3758565.137833786 2312845.4501192886 4523079.231776766 4655598.224973647 5682094.09984346 4713193.899747698 1.0039659409856334 0.8806123507915317 0.9396073981357261 0.8085226778784668 0.7974560813284143 0.49071722897780584 0.9596633043293404 0.9877799055164834 1.2055718947076692 1.0 22.168273604051123 1.7177531080556874 2.6953831735759777 1.0917205560937528 0.8244536662417513 0.3715466647170148 0.1403061801379509 0.25922268473965576 4.056888490734573 0.09001207498527156 0.0399837571743624 52.2099296538991 -1.7177531080556874 -0.26726688985200153 AKLNWLSVDFNNWKDWEDDS(ph)DEDMSNFDR ddPTM_BT-474_Trastuzumab_2h_R1 3 AKLNWLSVDFNNWKDWEDDSDEDMSNFDR 29 2 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 1 AKLNWLSVDFNNWKDWEDDS(1)DEDMSNFDR;AKLNWLSVDFNNWKDWEDDS(0.993)DEDMS(0.007)NFDR;AKLNWLSVDFNNWKDWEDDS(0.993)DEDMS(0.007)NFDR 268.64 6.144699999999998e-59 1850350000.0 257610.0 275483.0 172551.0 346731.0 252288.0 382622.0 422651.0 315629.0 748430.0 480394.0 True False 256223.05638316157 284652.28512200975 196844.6809598213 390627.10904886946 284415.3813718689 356172.2417353069 402205.75644638774 339182.83871158643 563989.4549481906 449734.843634005 0.5697202696433198 0.6329335810895281 0.43769052753229376 0.8685720365637546 0.632406817923422 0.7919605224654563 0.8943175342973948 0.7541840342431062 1.25404883106448 1.0 18.77871513694191 2.270393127875589 0.5209693964544151 1.06832191228583 0.5565793985784568 0.606040089286878 0.14028251853438886 0.6419770071808857 0.3633270181043683 0.12732055759635932 0.11126289985318542 186.37734804113472 -2.270393127875589 -0.5117425137073732 AKNS(ph)PPQAPSTR ddPTM_BT-474_Trastuzumab_2h_R1 6 AKNSPPQAPSTR 12 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 AKNS(1)PPQAPSTR;AKNS(1)PPQAPSTR;AKNS(1)PPQAPSTR;AKNS(1)PPQAPSTR;AKNS(1)PPQAPSTR;AKNS(1)PPQAPSTR 94.454 0.0039973 2892390000.0 1262260.0 1141580.0 1045020.0 1023290.0 1062320.0 1280970.0 1247680.0 1175640.0 1481880.0 1237650.0 True False 1255464.1324102688 1179576.8002003178 1192149.732523327 1152838.4090797135 1197600.1551360497 1192419.5589790337 1187324.9517995433 1263372.2265789588 1116690.530174665 1158662.117394527 1.0835463709070075 1.0180507177129614 1.0289019677316311 0.9949737648039195 1.0336060333353112 1.0291348453338725 1.024737871355862 1.0903715652841852 0.9637758181701468 1.0 20.14402848629166 4.7439495202512285 23.975378949363826 1.0264797078634769 1.083546413904745 0.24852481378468716 0.03137758829369022 518.323262125763 2305905.425479177 0.007488719500809774 0.06446290304234764 55456.125038525526 -4.7439495202512285 0.05706670604126818 AKNWEDEDFYDS(ph)DDDTFLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AKNWEDEDFYDSDDDTFLDR 20 1 A0A087X0M4;A0A087WWF4;Q9BWU0 A0A087X0M4 SLC4A1AP Kanadaptin 1 AKNWEDEDFYDS(0.999)DDDT(0.001)FLDR;AKNWEDEDFYDS(1)DDDTFLDR 212.97 7.252199999999998e-23 605980000.0 718020.0 768290.0 555120.0 697760.0 733330.0 930810.0 911240.0 850590.0 1288510.0 1016190.0 True False 714154.260099522 793862.0682088875 633276.0708104633 786096.344457056 826715.2287125533 866465.2955910547 867159.8399251548 914065.3450085021 970973.9756494166 951335.8841959708 0.7506857167519705 0.8344708545077393 0.6656703287773925 0.8263078871679813 0.8690045676257216 0.9107879876972735 0.9115180603725906 0.9608229440236367 1.0206426476491455 1.0 19.859595271789445 2.694180622825067 0.6982220587113747 1.001681115349395 0.7484225741274565 0.811442496757186 0.045571439188256825 0.30468272877970226 0.3167207092447798 0.033946112039251145 0.032811678319711456 494.5163132740177 -2.694180622825067 -0.25325854122193847 AKPAMPQDSVPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 16 AKPAMPQDSVPSPR 14 1 P53396 P53396 ACLY ATP-citrate synthase 1 AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.005)VPS(0.995)PR;AKPAMPQDS(0.012)VPS(0.988)PR;AKPAMPQDS(0.002)VPS(0.998)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR 221.79 2.5042e-12 70655920000.0 19466100.0 20530980.0 19557120.0 18575720.0 19047450.0 21355510.0 21212300.0 19724090.0 23952700.0 21275190.0 True False 19361296.680487026 21214341.258060507 22310592.502465613 20927404.247388527 21473029.854418762 19879253.85916323 20186180.010144796 21196001.752699625 18049878.03473609 19917389.159593444 0.9720800515242948 1.0651165716588096 1.1201564785271796 1.0507102150639356 1.0781046492770878 0.998085326338475 1.0134952853708683 1.0641957930761383 0.9062371523750719 1.0 24.247525210544797 1.250030204153573 24.996998998495815 0.9531185673729411 1.047329475515897 0.39794588824331045 0.04526712765749202 181.22569928105952 394971.3461079117 0.03054909395410762 0.010948508572638155 17.784030894648172 -1.250030204153573 0.09421090814295596 AKPPADPAAAAS(ph)PCR ddPTM_BT-474_Trastuzumab_2h_R1 2 AKPPADPAAAASPCR 15 1 Q9GZT9-2;Q9GZT9 Q9GZT9-2 EGLN1 Egl nine homolog 1 1 AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR 123.61 6.158e-05 873070000.0 1728630.0 1386760.0 1450330.0 1270890.0 1254570.0 2183800.0 1995450.0 1502420.0 2448500.0 2127880.0 True False 1719323.248148848 1432917.4682858777 1654523.8575056517 1431784.543692712 1414332.0530810263 2032839.046112252 1898922.4601407417 1614538.2095341752 1845099.9832190643 1992076.8766302778 0.8630807717908912 0.7193083184167807 0.8305522125754413 0.7187396031194663 0.7099786507604351 1.0204621467977308 0.9532375393829616 0.8104798707694791 0.9262192663669516 1.0 20.92584189313236 2.7483522158271203 24.999244366117992 0.9215140269603005 0.766309932023496 0.5924650182857296 0.07102454782856926 555.6707505343026 1418700.4565797444 0.022617395363431013 0.023723007017688494 560.2117529146294 -2.7483522158271203 -0.15520409493680454 AKPPVKPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKPPVKPKPR 10 3 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 89.24700000000001 0.0051003 496610000.0 452740.0 422550.0 447910.0 347650.0 398540.0 532350.0 479140.0 460440.0 617050.0 493240.0 False True 450302.4981441424 436614.321313131 510971.834696488 391662.45435464213 449291.70666835 495549.89751710714 455962.1677074524 494800.37086694554 464986.2955463856 461761.00091599044 0.9751852089086823 0.945541785570942 1.1065720874713945 0.8481930123542383 0.9729962161748064 1.073173993763202 0.9874419164956872 1.0715508020066988 1.0069847705284707 1.0 18.81678680657661 2.8322121206462465 8.777603098666471 1.032024274392318 0.9689676157579784 0.1694295173387429 0.06404106802238 0.599563170557169 51.81524484703079 0.018926899267503402 0.02008785592194626 679.5354542491261 -2.8322121206462465 -0.06305665863433962 AKPVATAPIPGTPWCVVWTGDER ddPTM_BT-474_Trastuzumab_2h_R1 1 AKPVATAPIPGTPWCVVWTGDER 23 1 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 184.3 3.0849e-17 582340000.0 259340.0 280610.0 231110.0 228860.0 270520.0 264460.0 303830.0 260960.0 312830.0 279910.0 False True 257943.7422553829 289949.93421767274 263648.27915586875 257833.65253445558 304969.1185023385 246178.5026718777 289132.5821566875 280434.1603280298 235737.23820723753 262045.9041569923 0.9843456362548152 1.106485274595107 1.0061148637450805 0.9839255200874533 1.1638003634646805 0.9394480080268364 1.1033661567305686 1.0701718892733427 0.8996028347232126 1.0 17.999460033904626 1.2487347436650893 24.999454710589497 0.9498014066766752 1.0479079508124802 0.2331993933998544 0.0686422611838656 233.28872689105765 573237.1170560267 0.043393643686698576 0.015442962579983472 17.731061806687872 -1.2487347436650893 0.098106544135805 AKPVGS(ph)PLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKPVGSPLFK 10 1 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 AKPVGS(1)PLFK;AKPVGS(1)PLFK 90.444 0.0065567 4303100000.0 6777700.0 5817600.0 5518100.0 4916600.0 4798900.0 6806800.0 7016700.0 6281100.0 10406600.0 6928200.0 True False 6741209.616273256 6011235.299186533 6295000.515814979 5539041.055889649 5410011.469691239 6336261.937483696 6677275.414602987 6749827.5767795425 7842032.871295715 6486036.344469566 1.0393419429450574 0.92679642541814 0.97054659910787 0.8539947607004409 0.8341013189517789 0.9769081764221723 1.0294847361280182 1.040670637397045 1.2090639729427917 1.0 22.6289056772744 2.0578519852935053 1.762573851196685 1.092074626245446 0.9242443836186074 0.46944836101926846 0.07354937261639884 0.3156316234251395 1.8535907097188322 0.04415999335496323 0.02323906330031161 114.24888894137146 -2.0578519852935053 -0.16783024262683854 AKPVNSKPDSAYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKPVNSKPDSAYR 13 2 O95573;C9JC11;F5H062 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 0 130.07 8.2317e-05 519700000.0 333310.0 438670.0 464850.0 332290.0 516020.0 623240.0 433130.0 402770.0 583990.0 469680.0 False True 331515.495994222 453270.8657683854 530296.8394513684 374357.87992953876 581732.0883098351 580156.8857491531 412177.8471827207 432826.7426246185 440073.4895650815 439704.62028672115 0.7539504492312327 1.0308530883137366 1.2060297185541835 0.8513849130933141 1.3230065400051996 1.319424129250328 0.9373971256293581 0.9843579590825821 1.0008389024389142 1.0 18.746175166481844 4.720121436437688 4.170674387007934 1.0764394176731709 0.7329144055762472 0.290655625191366 0.15065530259337054 0.26664837749254827 10.25439225466877 0.03738886470832922 0.2647095769641454 52495.42262393367 -4.720121436437688 -0.34352501209692365 AKPVVSDFDS(ph)DEEQDER ddPTM_BT-474_Trastuzumab_2h_R1 2 AKPVVSDFDSDEEQDER 17 1 F6VDE0;P51531-2;P51531;B1ALG1;F6T8Q0;B1ALG2;A0A0U1RR26;A0A1W2PS06;B4DNT1;B1ALF6 F6VDE0 SMARCA2 Probable global transcription activator SNF2L2 1 AKPVVSDFDS(1)DEEQDER;AKPVVSDFDS(1)DEEQDER 223.67 1.7957999999999993e-15 467730000.0 388310.0 446630.0 413980.0 363310.0 464440.0 511650.0 485580.0 441950.0 489870.0 450670.0 True False 386219.38210529694 461495.8095564635 472264.7856213345 409305.0087489866 523583.68104844727 476280.83979454846 462090.6403042624 474930.5531766273 369148.1024216968 421907.8547620011 0.9154116894153675 1.0938308077169931 1.1193552817065704 0.9701289135275195 1.2409905981575093 1.1288740762203142 1.0952406670999963 1.1256736460726393 0.8749495849749797 1.0 18.686568421251483 1.2451786738725827 24.998256617824012 0.9374747774292539 1.0922833891769388 0.30664857944260326 0.08907064448099183 156.28910573895584 590364.5004777224 0.060574974460287596 0.02097392789875998 17.58646993262278 -1.2451786738725827 0.1548086117476849 AKQEQEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AKQEQEAK 8 1 P05455 P05455 SSB Lupus La protein 0 ;;; 140.45 0.00059228 583800000.0 1253520.0 965710.0 852740.0 773140.0 724780.0 1029170.0 1116290.0 1031270.0 1872420.0 1196950.0 False True 1246771.1875991651 997853.0735659763 972798.379851049 871019.4447281697 817076.4368923737 958025.9003055897 1062290.7880580872 1108228.604082951 1410987.1801425547 1120559.6262395487 1.112632615350569 0.8904952937798059 0.8681362036178593 0.7773075384227405 0.7291681921776668 0.8549530769019397 0.9480002341535327 0.9889956572877975 1.2591808120712351 1.0 20.095787987642705 1.6100496594782825 2.3540897500385127 1.1268214220537565 0.86745345165316 0.4188885422279136 0.11394550263825688 0.24019068396460722 2.9599558822876535 0.0838035555480169 0.0318269129587918 40.74268624363464 -1.6100496594782825 -0.25936797040059645 AKS(ph)LDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 AKSLDRR 7 2 A0A494BZV2;Q6WCQ1-2;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 AKS(1)LDRR;AKS(1)LDRR;AKS(1)LDRR 78.939 0.026759 895530000.0 2213170.0 1613000.0 1528790.0 1768800.0 1490110.0 1656310.0 1988670.0 1846740.0 2791190.0 2145220.0 True False 2201254.5386263044 1666687.7299209114 1744030.3435191093 1992729.8986408515 1679866.6759260662 1541813.1882343555 1892470.4346428555 1984553.1163557062 2103338.6245298046 2008310.2229847547 1.0960729639441835 0.8298955563965993 0.8684068444999139 0.992242072880181 0.8364577627003487 0.7677166458590793 0.9423197736006453 0.9881705991648339 1.0473175909067567 1.0 20.937550708430038 1.7509709519589676 2.975538358796936 1.018821480303716 0.8938202593342468 0.24570635153689202 0.08775012447453624 0.31609140110241873 5.747371135319838 0.05057326247727435 0.02385840228559166 56.35999578516448 -1.7509709519589676 -0.1250012209694693 AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNR ddPTM_BT-474_Trastuzumab_2h_R1 4 AKSPAPGLASGDRPPSVSSVHSEGDCNR 28 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR 207.53 1.1212e-25 2140190000.0 82576.0 81902.9 76541.0 78255.1 96456.1 101979.0 113384.0 109671.0 100217.1 106933.0 True False 82131.41999105619 84628.9885151515 87317.30749370152 88162.18763632391 108739.21259490383 94929.4317627446 107899.18275105771 117855.20691805382 75519.93854533948 100108.44439005283 0.8204244955704965 0.8453731254219806 0.8722271934771739 0.8806668425774086 1.0862141875986298 0.9482659763732895 1.0778229889443673 1.1772753800753735 0.7543813012525789 1.0 16.611204148568948 3.3409773607546036 5.567323972917483 1.0287443984003855 0.8511159631561072 0.3241266039215569 0.10584860098340554 0.22082248764077222 10.18313993598524 0.02973137567785594 0.04037476740479198 2192.6906300640535 -3.3409773607546036 -0.1776284352442783 AKS(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_BT-474_Trastuzumab_2h_R1 46 AKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 32 1 Q00839;Q5RI18;A0A1W2PRI6;Q00839-2;A0A1W2PPS1;A0A1W2PP35 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.966)PQPPVEEEDEHFDDT(0.032)VVCLDT(0.001)Y(0.001)NCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.995)PQPPVEEEDEHFDDT(0.005)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK 320.57 1.1749999999999995e-104 412376556000.0 10872247.2 9719574.2 8325895.1 8052972.800000001 7742501.000000001 11100565.700000003 10053877.499999998 9194867.100000001 16690153.7 11569161.9 True False 10813712.229095409 10043084.351640327 9498108.760102471 9072478.330790091 8728462.608951176 10333209.721079964 9567533.035783222 9881034.773591073 12577088.957236527 10830808.082684169 0.9984215532711643 0.9272700868642275 0.8769529187104368 0.837654795609829 0.8058920943217401 0.9540571342594701 0.8833628075341288 0.9123081766528989 1.1612327410125785 1.0 23.36863755013002 1.319170988693074 7.269202231110604 1.079222689676156 0.8954248755491215 0.5670230837344068 0.06329975039753775 0.14171109653085967 10.450359740500959 0.04285185103432995 0.015483681777698963 20.853117421247035 -1.319170988693074 -0.18379781412703455 AKS(ph)PT(ph)PDGSER ddPTM_BT-474_Trastuzumab_2h_R1 1 AKSPTPDGSER 11 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 2 AKS(0.987)PT(0.956)PDGS(0.057)ER 135.24 0.0031132 1134600000.0 1918700.0 1500800.0 1349200.0 1291400.0 1337600.0 1533800.0 1789200.0 1767200.0 2527100.0 1706100.0 True False 1908369.932387612 1550753.2207472434 1539155.6325433708 1454891.1075897745 1507935.4314236594 1427772.016176837 1702649.560592254 1899077.4376597712 1904330.066405108 1597215.2373343038 1.1948107479694563 0.9709106102289609 0.9636494797734134 0.9108923290876794 0.9441028335920153 0.8939133454297233 1.0660113432388212 1.188992812784121 1.1922814295106325 1.0 20.607127309694636 2.010048159494731 6.4324751240566345 1.143628891955354 0.9738958303695874 0.33849316048947065 0.09233596523823882 0.1419132994253269 26.055559400538176 0.03615279034314128 0.02529503305828158 102.34064728983023 -2.010048159494731 -0.16973306158576673 AKS(ph)PTPDGS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 5 AKSPTPDGSER 11 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 2 AKS(0.843)PT(0.539)PDGS(0.617)ER;AKS(0.875)PT(0.157)PDGS(0.968)ER;AKS(0.805)PT(0.195)PDGS(1)ER;AKS(0.857)PT(0.472)PDGS(0.67)ER;AKS(0.582)PT(0.425)PDGS(0.993)ER 141.82 0.00045372 4985710000.0 6510240.0 5266790.0 4783440.0 4547070.0 4759300.0 5464060.0 6230780.0 6216960.0 8920740.0 6146700.0 True False 6475189.591195656 5442091.921308217 5456906.773594174 5122728.595778405 5365368.644418826 5086342.39321372 5929373.367508955 6680901.124283207 6722343.158791773 5754412.343545375 1.1252564475082785 0.9457250534735344 0.9482995739287073 0.890226193387841 0.9323921061091611 0.883903010342834 1.0304046727134233 1.1610049342009803 1.1682067181598672 1.0 22.45623717320876 1.9811862741002446 4.9988340737682835 1.1221350037801745 0.9497301660278278 0.4548865436442684 0.07594934951444862 0.14969894580499118 10.358199349009983 0.03232178812528277 0.020611739353914842 95.76047113441429 -1.9811862741002446 -0.17240483775234672 AKS(ph)PTPDGSER ddPTM_BT-474_Trastuzumab_2h_R1 6 AKSPTPDGSER 11 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 1 AKS(0.931)PT(0.069)PDGSER;AKS(0.752)PT(0.248)PDGSER;AKS(0.601)PT(0.399)PDGSER;AKS(0.751)PT(0.249)PDGSER;AKS(0.5)PT(0.5)PDGSER;AKS(0.817)PT(0.183)PDGSER 164.66 1.3637e-05 3294400000.0 2310300.0 2142430.0 1867836.0 1929782.0 1962867.0 2221889.0 2484241.0 2200096.0 2744626.0 2310271.0 True False 2297861.60149846 2213739.487423716 2130811.073278444 2174092.2033349923 2212826.4776257924 2068295.0431941173 2364068.772107792 2364278.3353811223 2068249.6984041727 2162827.5268574846 1.062434046619138 1.0235395379123018 0.9851969455809731 1.0052083101114748 1.0231174007855146 0.9562921765654057 1.0930454429450989 1.0931423361419572 0.9562712110517984 1.0 21.044487192521263 2.2295611785220597 24.999259913333354 1.0504825224147443 1.0092921538766304 0.03464002383074549 0.04656196731166562 379.66277949776105 1054644.685002564 0.01741566473401641 0.01303975865197666 169.6528573292301 -2.2295611785220597 -0.041190368538113864 AKS(ph)PTPESSTIASYVTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AKSPTPESSTIASYVTLR 18 1 Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;B4DJX4;Q9HAU0-5;Q9HAU0-8;H0YGJ6 Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 AKS(0.707)PT(0.289)PES(0.003)STIASYVTLR;AKS(0.83)PT(0.167)PES(0.002)STIASYVTLR;AKS(0.898)PT(0.102)PESSTIASYVTLR 193.39 7.6273e-15 3803100000.0 624680.0 672350.0 687680.0 564355.0 529940.0 750070.0 727840.0 657630.0 992170.0 733810.0 True False 621316.7922884723 694728.7633058422 784499.3665782874 635802.2851353781 597424.7177995319 698219.4263748598 692631.5985811917 706705.6899774754 747662.9978968598 686977.6175536511 0.9044207211597387 1.0112829669470065 1.14195768032722 0.9255065505619966 0.8696421870729647 1.0163641558821686 1.0082302259681686 1.0287171982314018 1.0883367649725055 1.0 19.389903569738728 1.9937209912667018 1.965126752958918 1.0428407661555747 0.9796605116590922 0.12737659784493005 0.07290963741470895 0.8033859324010634 5.778565616797973 0.045430278869111954 0.023323661335840386 98.5646062397303 -1.9937209912667018 -0.06318025449648257 AKS(ph)VDEIAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AKSVDEIAK 9 1 A6ND36;A6ND36-2 A6ND36 FAM83G Protein FAM83G 1 AKS(1)VDEIAK;AKS(1)VDEIAK;AKS(1)VDEIAK;AKS(1)VDEIAK 149.69 5.2699e-05 2334290000.0 6081300.0 4249620.0 3653450.0 3654920.0 3569930.0 4794350.0 4889380.0 5090890.0 8170900.0 4973510.0 True False 6048558.956495943 4391066.03275046 4167824.0036433334 4117632.497252612 4024539.424867116 4462927.869185956 4652862.010154577 5470798.062815613 6157291.179450554 4656096.333763868 1.2990622450473321 0.9430788622023283 0.8951326830203645 0.8843529433429966 0.8643591404419638 0.9585127860913997 0.9993053572397468 1.1749752734160381 1.3224149025441574 1.0 22.15068947697021 1.768301285099237 3.63670159956378 1.1893201615158684 0.9616395635089208 0.27786255868631193 0.137049314789537 0.24374571358039754 6.417206160056347 0.07303165368752146 0.03676493086647062 58.65449299036752 -1.768301285099237 -0.22768059800694762 AKSEDS(ph)DVELS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 1 AKSEDSDVELSD 12 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 2 AKS(0.009)EDS(0.991)DVELS(1)D 118.2 0.007785200000000002 535840000.0 830260.0 705230.0 538180.0 619340.0 612270.0 859440.0 822570.0 795460.0 1160800.0 853030.0 True False 825789.9724105586 728703.1542294626 613951.0660555818 697748.3804976384 690238.9552913901 800028.9357041462 782779.1465774484 854821.2644640338 874736.3939230918 798588.8950842735 1.034061426966643 0.9124884639831662 0.7687948953895642 0.873726625542428 0.8643232576112275 1.001803231460814 0.9802028946255797 1.0704146648242914 1.0953525641385016 1.0 19.60709348490234 2.41732285096997 1.6784923690988907 1.0535999780517369 0.8842302846170335 0.5048997143998437 0.06864169217995106 0.29721522831892794 1.7013925345237837 0.033471184549866945 0.02470832485539298 261.4103935770667 -2.41732285096997 -0.16936969343470343 AKSPT(ph)PESSTIASYVTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKSPTPESSTIASYVTLR 18 1 Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;B4DJX4;Q9HAU0-5;Q9HAU0-8;H0YGJ6 Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 AKS(0.067)PT(0.922)PES(0.011)STIASYVTLR 189.51 5.2355999999999985e-14 1045800000.0 78944.0 75915.0 82915.0 89843.0 74308.0 108710.0 90812.0 76979.0 144140.0 115610.0 True False 78518.97427550293 78441.78488341352 94588.71128990028 101217.11458818961 83770.68334197758 101195.13357581427 86419.07662447126 82723.56387144161 108618.62837704562 108231.67082129941 0.7254713308930164 0.7247581441566049 0.8739466975990334 0.9351894304145827 0.7739941803198326 0.9349863381754208 0.7984638504487029 0.7643193830761972 1.003575271016421 1.0 16.723763197733362 -4.999999988091977 0.0247028907379609 2.139501671689052 3.0611204081344816e-08 0.3860815767580592 0.08142119987669993 2650.2332392949347 4.945221656925652 309.1613838020115 146.89689367321452 1.0000000274192367e-05 4.999999988091977 -2.139501641077848 AKT(ph)PEPGAQQSGFPTLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 AKTPEPGAQQSGFPTLSR 18 1 Q9H9D4 Q9H9D4 ZNF408 Zinc finger protein 408 1 AKT(1)PEPGAQQSGFPTLSR;AKT(1)PEPGAQQSGFPTLSR;AKT(1)PEPGAQQSGFPTLSR;AKT(1)PEPGAQQSGFPTLSR 160.12 6.6879e-11 1584560000.0 442882.0 388255.0 330565.0 310760.0 363188.0 468502.0 448106.0 468820.0 601815.0 406636.0 True False 440497.57252081553 401177.8329698962 377105.67867751233 350102.18413705926 409437.8390160706 436115.559475081 426429.40084884485 503805.729019723 453505.757157845 380684.14234140556 1.1571208871783476 1.0538338437278836 0.9905999140340236 0.9196657942822326 1.0755316375875676 1.1456099978127363 1.1201659155700108 1.3234218949101888 1.1912914322318462 1.0 18.538234949138925 2.5836222460504117 1.9506540349262884 1.198940501836382 1.0284184907862188 0.24211649182709116 0.0958287006655051 0.357772361740537 2.7184469988252156 0.03850672007517578 0.03389814510806559 383.37363796652664 -2.5836222460504117 -0.17052201105016307 AKT(ph)QTPPVS(ph)PAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 3 AKT(0.643)QT(0.366)PPVS(0.991)PAPQPTEERLPS(0.606)S(0.394)PVYEDAASFK 167.51 2.8055e-13 1000200000.0 660050.0 775380.0 694480.0 749220.0 696930.0 891090.0 777370.0 607590.0 1100200.0 771060.0 True False 656496.3641384488 801188.0545728916 792256.7474716272 844071.1751807422 785679.9044722572 829491.0457002315 739765.6432582161 652931.4510795041 829070.4519246953 721850.2906623215 0.9094633231166143 1.1099088896089175 1.0975360926220663 1.169316111802461 1.0884250025741071 1.149117838463632 1.024818653989121 0.9045247463714643 1.1485351777914998 1.0 19.461340132442928 2.03703487784985 10.34067772394094 0.9964980783176246 1.092174399847904 0.1140000088304075 0.0863256161926754 0.6969762348620554 189.86609633414375 0.03186761819387182 0.02348705972050222 108.9017547968409 -2.03703487784985 0.0956763215302795 AKTDHGAEIVYKS(ph)PVVS(ph)GDTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKTDHGAEIVYKSPVVSGDTSPR 23 2 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 3 AKTDHGAEIVY(0.005)KS(0.995)PVVS(0.993)GDT(0.261)S(0.746)PR 88.226 0.004598 196730000.0 276660.0 242420.0 181540.0 184820.0 211100.0 343450.0 345550.0 287380.0 464760.0 351210.0 True False 275170.49329981586 250488.8031540154 207099.25402603287 208218.19304997873 237982.33371227156 319708.10989433696 328834.42637081 308825.75488607114 350226.1254649348 328795.4771139914 0.8369047400381847 0.7618377398396282 0.6298725756322762 0.6332757216663012 0.7238005090616394 0.9723616416520721 1.0001184604397861 0.939263999604846 1.0651792674858285 1.0 18.32683092798775 2.7364799831584214 4.942873830026004 0.9894486669236074 0.7085503653538135 0.8298589346303193 0.06298715759221359 0.07833778259785511 5.891215848024006 0.021607997410617644 0.02155424030211235 545.1047709688055 -2.7364799831584214 -0.2808983015697939 AKTQT(ph)PPVS(ph)PAPQPTEER ddPTM_BT-474_Trastuzumab_2h_R1 8 AKTQTPPVSPAPQPTEER 18 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 AKT(0.002)QT(0.998)PPVS(1)PAPQPTEER;AKT(0.019)QT(0.981)PPVS(1)PAPQPTEER;AKT(0.006)QT(0.994)PPVS(0.998)PAPQPT(0.002)EER;AKT(0.001)QT(0.999)PPVS(1)PAPQPTEER;AKT(0.023)QT(0.977)PPVS(1)PAPQPTEER;AKT(0.003)QT(0.997)PPVS(0.999)PAPQPT(0.001)EER;AKT(0.134)QT(0.866)PPVS(1)PAPQPTEER;AKT(0.363)QT(0.637)PPVS(1)PAPQPTEER 163.6 7.501300000000001e-11 36244600000.0 18780070.0 18264200.0 18478040.0 18069490.0 18489650.0 20428550.0 18769180.0 16629910.0 20953480.0 17881240.0 True False 18678960.189781923 18872112.856057942 21079587.417997133 20357085.581293453 20844197.330758385 19016372.422134124 17861243.05816954 17870918.3291719 15789775.616247091 16740043.954300217 1.1158250384989958 1.1273633992585805 1.2592313064137544 1.2160712144405141 1.245169808852496 1.1359810329081699 1.0669770704862043 1.067555042146779 0.943233820613176 1.0 23.996799980186275 1.9548393709699896 1.272503404710256 0.985420189413935 1.1932088343224874 0.7367995428409373 0.050205418528475675 0.2445854184769134 0.7331147131204552 0.03986321932722425 0.017971664042841232 90.12377423517604 -1.9548393709699896 0.2077886449085523 AKTQT(ph)PPVS(ph)PAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 3 AKT(0.166)QT(0.834)PPVS(1)PAPQPTEERLPS(0.62)S(0.38)PVYEDAASFK 199.81 5.3922e-26 1891800000.0 1504800.0 1713000.0 1769000.0 1754700.0 1699800.0 1934600.0 1935100.0 1527900.0 2487300.0 1802500.0 True False 1496698.3239989982 1770016.1694696315 2018059.8235763602 1976844.8400865572 1916259.4544960654 1800865.6555585493 1841491.8202001308 1641919.6565189925 1874338.2431124295 1687462.9068021118 0.8869518363727301 1.0489215273027632 1.1959135904212308 1.1714893596285616 1.1355861197136137 1.0672031060945486 1.0912783995293367 0.9730108139861707 1.1107433743029425 1.0 20.686424359036796 1.777384824746353 24.999868985034393 1.0256440612002644 1.092736391867797 0.08074461404238664 0.08618267391743833 123.24398261251129 79391.34486932764 0.04155092568743981 0.023076540067576617 59.89420776158602 -1.777384824746353 0.06709233066753262 AKTQT(ph)PPVSPAPQPTEER ddPTM_BT-474_Trastuzumab_2h_R1 7 AKTQTPPVSPAPQPTEER 18 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 AKT(0.046)QT(0.954)PPVSPAPQPTEER;AKT(0.143)QT(0.857)PPVSPAPQPTEER;AKT(0.068)QT(0.932)PPVSPAPQPTEER;AKT(0.013)QT(0.987)PPVSPAPQPTEER;AKT(0.003)QT(0.997)PPVSPAPQPTEER;AKTQT(1)PPVSPAPQPTEER;AKT(0.25)QT(0.75)PPVSPAPQPTEER 171.9 1.9617000000000003e-11 40812240000.0 26762520.0 23701690.0 23518490.0 22623320.0 23954850.0 30100460.0 30710490.0 26233660.0 34894160.0 28847690.0 True False 26618433.56591552 24490586.423675857 26829688.965620305 25487429.99237871 27005358.155980147 28019686.04906125 29224906.273235433 28191348.921026308 26294961.825788625 27006605.72645 0.9856267698182335 0.9068368928602539 0.9934491300898126 0.9437479944921985 0.9999538049882133 1.0375123157968367 1.0821391836225036 1.0438686448262537 0.9736492653734564 1.0 24.686808993087148 3.011714666096827 3.185725950276516 1.035413151858427 0.9564163186835996 0.46139920309601623 0.03500888484513833 0.1975286465730301 4.161065811312194 0.010794045814539606 0.012550953626834217 1027.3411074962635 -3.011714666096827 -0.07899683317482753 AKTQT(ph)PPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 4 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 AKT(0.039)QT(0.961)PPVSPAPQPTEERLPS(0.541)S(0.459)PVYEDAASFK;AKT(0.007)QT(0.993)PPVSPAPQPT(0.02)EERLPS(0.646)S(0.334)PVYEDAASFK;AKT(0.446)QT(0.554)PPVS(0.128)PAPQPT(0.21)EERLPS(0.348)S(0.313)PVY(0.001)EDAASFK;AKT(0.042)QT(0.958)PPVS(0.013)PAPQPT(0.325)EERLPS(0.365)S(0.296)PVYEDAASFK 275.92 3.4042999999999985e-73 13993700000.0 2461827.0 2469796.0 2395960.0 2482636.0 2401291.0 2999444.0 3198286.0 2653087.0 4466578.0 2985441.0 True False 2448572.796966691 2552001.666836792 2733290.341942347 2796937.463049593 2707081.1752831545 2792099.496211703 3043572.687541001 2851073.8240428087 3365849.7009788277 2794907.5994153656 0.8760836306283899 0.9130898164113246 0.9779537407655596 1.0007262721796786 0.9685762691580277 0.998995278697496 1.0889707724783642 1.0200959146696627 1.2042794193564363 1.0 21.414369157198088 3.927659864815894 0.4453408051471998 1.0820737914114456 0.8241106590321687 0.5636094413341894 0.05690187251709513 1.866550943579408 0.4854752273833282 0.044172518239822225 0.2389629183071305 8465.641337001118 -3.927659864815894 -0.2579631323792768 AKTQT(ph)PPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 AKT(0.049)QT(0.951)PPVSPAPQPTEERLPSSPVYEDAASFK 205.28 2.4288e-25 1322000000.0 356350.0 345520.0 360450.0 383180.0 358200.0 512480.0 547640.0 411090.0 825970.0 551210.0 True False 354431.45119420666 357020.424328749 411198.22691243584 431690.5487116698 403814.6467822623 477053.4638481577 521148.5610120401 441767.6232727227 622420.7609309594 516031.3058853771 0.686840986490332 0.691858071897777 0.7968474436002005 0.8365588362337819 0.782539047876989 0.9244661291036531 1.0099165594573436 0.8560868657275802 1.2061686061140133 1.0 18.97709906620076 3.017909196959181 0.4564050879273214 1.0532601438536597 0.6482869129100108 0.6941849899023984 0.08408840978384421 0.779927176315111 0.3184257558304932 0.0750466972388106 0.13942082412170728 1042.0995226447992 -3.017909196959181 -0.4049732309436489 AKTQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 AKTQTPPVSPAPQPTEERLPS(0.287)S(0.713)PVYEDAASFK 240.13 5.1379e-47 769430000.0 199950.0 286350.0 250870.0 345960.0 320610.0 358200.0 438540.0 310950.0 626930.0 458620.0 True False 198873.49141653345 295880.98664776934 286190.3153988702 389758.50052792166 361437.7830956478 333438.47711210215 417326.1448145139 334154.66797210596 472431.5019316033 429350.4789556639 0.46319615597091196 0.6891362678049393 0.6665657299253255 0.9077863415360702 0.8418245717922467 0.7766114013035352 0.9719941289680227 0.7782794811010606 1.1003399904915165 1.0 18.711796275589094 5.186813492257306 0.44079561028324876 0.9394746588015076 3.646929759996115e-24 0.7114747791794553 0.09516319461615347 4.275148271796507 0.48220022014644703 0.06325483069653347 2.2787079815251072 153749.42216911746 -5.186813492257306 -0.9394746588015076 down AKVDEFPLCGHMVSDEYEQLSSEALEAAR ddPTM_BT-474_Trastuzumab_2h_R1 5 AKVDEFPLCGHMVSDEYEQLSSEALEAAR 29 1 P27635;X1WI28;A6QRI9;B8A6G2 P27635 RPL10 60S ribosomal protein L10 0 ;;;; 345.09 1.1182999999999995e-107 1317575000.0 452545.0 463387.0 426218.0 471549.0 450122.0 525057.0 548268.0 469280.0 689007.0 543289.0 False True 450108.54800247645 478810.5561716433 486225.7896467314 531247.0550509918 507442.36861788225 488761.0454412311 521746.18225284776 504300.0565555553 519210.4570707862 508615.83088688605 0.8849676330711355 0.9413992390616892 0.9559784814383135 1.044495713247154 0.997692831804001 0.9609630997701474 1.0258158526899683 0.9915146677133403 1.0208303114856374 1.0 18.95621684166845 4.358770961220843 1.6212474763992148 1.0034743255890468 0.8827851871622352 0.7258111376531285 0.023520373257047263 0.266171160309932 1.1099393447567822 0.006275353843493293 0.040610295993615146 22843.93739148217 -4.358770961220843 -0.12068913842681162 AKVEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AKVEEAR 7 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 99.442 0.0095993 181250000.0 559020.0 634310.0 621540.0 548190.0 464890.0 493830.0 661810.0 541630.0 824680.0 618190.0 False True 556010.2984329608 655422.6249015083 709047.4294774726 617590.7977928128 524090.98588108865 459692.6944507802 629795.7219402863 582049.1809414118 621448.664145845 578736.5849409134 0.9607312081190221 1.1325059482258657 1.2251643457962198 1.0671362652075405 0.9055777697803504 0.794303844637216 1.0882251758882426 1.0057238406672295 1.073802279510794 1.0 19.142547321663205 3.453545726995743 11.189817597416958 0.9798069547317162 1.1149958702357103 0.2610112961734805 0.09891003977202951 0.723631038481345 338.69741376421143 0.02870952249892552 0.03904157878319989 2841.487350285357 -3.453545726995743 0.13518891550399414 AKWDAWNELK ddPTM_BT-474_Trastuzumab_2h_R1 2 AKWDAWNELK 10 1 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 ; 167.2 4.8476e-06 3911100000.0 9400500.0 7663900.0 6990900.0 5732000.0 5097300.0 7867000.0 7089100.0 7010600.0 11287400.0 8163600.0 False True 9349888.752493743 7918988.278574614 7975157.954007895 6457670.612284803 5746410.940935859 7323172.806926044 6746173.15000814 7533766.57110548 8505771.513411015 7642592.058790416 1.2233923622469964 1.036165245725276 1.0435148039643127 0.8449581716005984 0.7518929306617128 0.9582053772584943 0.8827074764835543 0.9857606572681363 1.1129432852075076 1.0 22.86563059451434 4.624593580455801 1.4882191240066969 0.9317103974213464 1.288784638847876 0.44310236798465086 0.09573889298349375 0.866395104286311 2.103955307208322 0.027410619904870884 0.42864155756009037 42130.205786190665 -4.624593580455801 0.35707424142652966 AKWDAWNELKGTSKEDAMK ddPTM_BT-474_Trastuzumab_2h_R1 1 AKWDAWNELKGTSKEDAMK 19 3 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 107.45 0.00012886 375930000.0 1592400.0 1121700.0 944220.0 982710.0 897190.0 1436700.0 1321900.0 1330900.0 2301100.0 1439900.0 False True 1583826.6953322722 1159035.1064180322 1077157.968692633 1107120.9852404734 1011441.8284382403 1337384.3106280214 1257954.6468516106 1430218.5161732617 1734024.7381602607 1348004.3492395906 1.1749418288047135 0.8598155540609673 0.7990760336198158 0.8213037189865156 0.7503253450248842 0.9921216584964582 0.93319776569061 1.060989541302332 1.2863643497429547 1.0 20.362393720603787 1.7094945969284392 2.1811574192191547 1.1495849216884368 0.8858105306390537 0.3640010269473595 0.1297703660269156 0.2799505552796601 2.805357920889638 0.08824987638824922 0.03649479437550613 51.22648971209006 -1.7094945969284392 -0.26377439104938316 AKYPDYEVTWANDGY ddPTM_BT-474_Trastuzumab_2h_R1 3 AKYPDYEVTWANDGY 15 1 Q9NRX4 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 ;; 132.59 0.00037944 880260000.0 869000.0 943690.0 888180.0 860450.0 880320.0 1010980.0 1019220.0 911570.0 1087460.0 1022810.0 False True 864321.4005549755 975100.1511773489 1013228.0238010468 969382.8817760738 992423.5339345646 941093.3321909355 969916.4348014966 979595.9822586692 819470.054217442 957533.3901283029 0.9026540582978129 1.0183458469753126 1.0581646909099236 1.012375016652091 1.0364375218305304 0.9828308254240988 1.012932232756431 1.023041068183962 0.8558135545619341 1.0 19.868963270542405 1.2699111648352397 24.99925642271249 0.9279065466351127 1.0094518226802436 0.2707840139387263 0.0508870546474884 196.52635160059103 156712.353655343 0.03180806671853854 0.011613734099354307 18.617062847124604 -1.2699111648352397 0.08154527604513084 ALAAGADS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALAAGADSPK 10 0 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 ALAAGADS(1)PK 126.5 0.00039961 306680000.0 650640.0 540820.0 450890.0 406620.0 439220.0 692890.0 577570.0 474750.0 833690.0 567320.0 True False 647137.0265328995 558820.8667674058 514371.3927938637 458098.05030831235 495152.0635390989 644992.1451876177 549630.7325683365 510178.2557316522 628238.2703736593 531113.1518929121 1.2184541546871375 1.0521691371711321 0.9684779805595475 0.8625243955560684 0.9322910979973924 1.2144156906844343 1.034865603703141 0.9605829829544854 1.182870859316115 1.0 19.018659729598586 ALAAPAAEEKEEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALAAPAAEEKEEAR 14 1 Q01650 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 0 ;;; 180.97 1.5427e-06 1262600000.0 734080.0 791270.0 843980.0 714760.0 955110.0 1161580.0 819460.0 790370.0 1279380.0 970190.0 False True 730127.7948439554 817606.9436171845 962805.047994334 805248.5427140064 1076737.5971195041 1081282.7086652024 779819.5891588025 849351.4228175377 964093.9418136852 908271.6435785526 0.8038650110965505 0.9001788720341934 1.0600408531977525 0.8865723689681211 1.1854797017302032 1.1904838341148616 0.8585752893114065 0.9351292961994588 1.061459915246495 1.0 19.792764314060676 4.464588157410256 3.372866770869876 1.013985693120394 0.8129158115949814 0.30664147210126735 0.10604183301014887 0.3184413862781188 7.248465221967391 0.02802790357430255 0.11673045546565419 29146.617217298794 -4.464588157410256 -0.20106988152541272 ALADENEFVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALADENEFVR 10 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 114.5 0.0031355 184470000.0 81439.0 128630.0 102750.0 133750.0 141580.0 130640.0 127100.0 107520.0 99734.0 109550.0 False True 81000.54147272355 132911.37179152307 117216.30688098964 150682.7362863036 159609.37378959448 121609.16429348156 120951.6874308492 115543.68837549713 75155.892067131 102558.42520952634 0.7897989980563748 1.2959576116734028 1.1429222576450186 1.469238007296422 1.5562775409578817 1.185754988388664 1.1793442341157785 1.1266133244484007 0.7328105117993758 1.0 16.64608648901147 1.4627866147981752 3.1151733643669477 0.8695723003992698 1.2490938967893506 0.32300901530196025 0.20442117298370766 0.26814359363477047 4.975335030030594 0.1558680559241773 0.05428025450806707 29.02596149463697 -1.4627866147981752 0.37952159639008076 ALAEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALAEEAKR 8 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 140.5 0.0010399 1265770000.0 973070.0 1165350.0 1032200.0 1073710.0 1017300.0 1167890.0 1220170.0 968720.0 1449640.0 1224340.0 False True 967831.0992382402 1204137.9702810494 1177524.7879567656 1209641.575910033 1146847.1249904956 1087156.5132173465 1161145.7155979492 1041010.8054604882 1092395.6461807992 1146201.5729897884 0.8443812345447398 1.050546429752437 1.027327841546468 1.0553480333784273 1.0005632098366637 0.9484863211115416 1.0130379707726103 0.9082266417983381 0.9530571863824615 1.0 20.128429350574503 2.421227573975183 1.612832847243557 0.9527433417358696 1.0022817223736173 0.030543967749760537 0.062327574780052804 0.9061954518220103 4.782474869154965 0.029499813416886768 0.02161110821360358 263.7713207741153 -2.421227573975183 0.049538380637747736 ALAEEASEEELPS(ph)DVDLNDPYFAEEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 ALAEEASEEELPS(1)DVDLNDPYFAEEVK;ALAEEASEEELPS(1)DVDLNDPYFAEEVK 145.57 1.0161e-07 71280000.0 208358.0 200731.0 168335.0 157204.0 160428.0 209405.0 207862.0 188712.0 296790.0 215965.0 True False 207236.22367874987 207412.2099905479 192035.10480595045 177106.0102815109 180857.5548687461 194929.32523634803 197806.92095004892 202794.6477001195 223650.08128224927 202181.92880306125 1.0249987469484072 1.025869182366844 0.9498133979768564 0.8759734924382091 0.8945287837515562 0.9641283293237461 0.9783610341492296 1.00303053245503 1.1061823507485649 1.0 17.625294528100557 1.5986202110908188 2.579284792459149 1.0532300026974493 0.954700886822116 0.34301801670781984 0.051405093493883156 0.2825226019714888 4.263123334805623 0.03958352238009806 0.015221950761320222 39.68443587672928 -1.5986202110908188 -0.0985291158753333 ALAFNGVMFGDRPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALAFNGVMFGDRPLK 15 1 Q8WXA9-2;Q8WXA9 Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 0 170.11 1.0567e-06 244140000.0 160660.0 212380.0 168510.0 202080.0 210130.0 266170.0 261560.0 225110.0 277930.0 269450.0 False True 159795.0244110041 219448.93991357868 192234.7432848234 227663.30728027056 236888.80996191187 247770.29439678474 248907.34354376845 241908.85128541852 209437.8755711965 252253.4703122487 0.6334700736255635 0.8699540967342754 0.7620697667582852 0.9025180386952079 0.9390903905848436 0.982227495582461 0.9867350615064352 0.9589911725930858 0.8302675690128128 1.0 17.944514591410993 5.652317436141544 0.5512017982154621 0.9576752955306822 7.823357130927465e-19 0.6928125394905971 0.06154695775848386 5.57431771642069 0.6049457971517974 0.029794535689643596 4.266920038983057 449073.50848644925 -5.652317436141544 -0.9576752955306822 ALAMPGRPES(ph)PPVFR ddPTM_BT-474_Trastuzumab_2h_R1 6 ALAMPGRPESPPVFR 15 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR 129.03 4.1427e-05 5516880000.0 1673800.0 2137930.0 1880910.0 2024990.0 1929330.0 2060490.0 2147120.0 1703340.0 2143390.0 2098290.0 True False 1664788.4467766637 2209089.7076440216 2145725.7788372007 2281353.5263731 2175018.739465167 1918053.1761717368 2043255.6028050783 1830451.8801852644 1615180.2544545298 1964375.335763552 0.8474899966759972 1.1245761782003587 1.092319649800102 1.1613633529390344 1.1072317493844617 0.976418885562005 1.0401553947483593 0.9318238968184603 0.8222360691709204 1.0 20.905639182942853 1.887956716441636 1.6154324805436335 0.9037522436724075 1.0681020315692806 0.2886892969135162 0.09322486134556861 0.4285760726084992 2.0955336354701455 0.06372864539082243 0.02835031431983366 77.2603580436307 -1.887956716441636 0.16434978789687316 ALAPADLMEHHS(ph)GSQGPLLTTGDLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALAPADLMEHHSGSQGPLLTTGDLGK 26 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 ALAPADLMEHHS(0.5)GS(0.5)QGPLLTTGDLGK 72.37 0.047227 98991000.0 33960.0 31832.0 26533.0 32069.0 41644.0 41921.0 37617.0 26798.0 61111.0 62850.0 True False 33777.163133310685 32891.50887714966 30268.615771029694 36128.932111891336 46947.116556673776 39023.09994141945 35797.321999105094 28797.80283748674 46051.01289544632 58838.85919140788 0.5740621690748738 0.5590099694175026 0.5144324038058468 0.6140318253683472 0.7978930455458145 0.6632198597609438 0.6083959222025926 0.4894350983897394 0.7826632522843179 1.0 15.844481654441756 -4.999999994588055 0.2830959128272755 3.8990921471687314 0.5885056055916952 0.6112739674613833 0.09296169920325313 168.96201022659713 1.61037066743809 288.0904977942214 0.11239998655105018 1.0000000124614633e-05 4.999999994588055 -3.3105865415770364 ALAPTWEQLALGLEHSETVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALAPTWEQLALGLEHSETVK 20 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ; 263.09 1.7999e-36 1275070000.0 1308470.0 1550350.0 1387740.0 1319130.0 1311030.0 1551350.0 1721660.0 1459460.0 2015230.0 1447240.0 False True 1301425.342904685 1601952.4625436328 1583121.7295476855 1486131.7227465534 1477981.899416387 1444108.8259850927 1638376.7284201097 1568372.316187715 1518603.5691985148 1354875.9041555002 0.9605494783050769 1.18236102482178 1.1684625320238844 1.0968766351135792 1.0908614544574244 1.0658605866086397 1.2092448639724807 1.1575763591170276 1.12084329239368 1.0 20.369729287576252 ALASNTSFFSGCS(ph)PIEEEAH ddPTM_BT-474_Trastuzumab_2h_R1 1 ALASNTSFFSGCSPIEEEAH 20 0 O95239;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 ALASNTSFFS(0.002)GCS(0.998)PIEEEAH 155.94 2.5302e-08 69442000.0 80751.0 83179.0 79042.0 75897.0 61544.0 90324.0 82421.0 75279.0 125310.0 95881.0 True False 80316.24558827952 85947.56273223276 90170.42655461999 85505.55241810533 69381.26360013279 84080.11447982567 78433.98135120404 80896.70123901653 94429.02956797283 89761.79249214604 0.8947709638854083 0.9575072015162018 1.0045524276101072 0.9525829425207488 0.7729487310116218 0.9367027122055579 0.8738014156531784 0.9012375866501866 1.0519958096451245 1.0 16.453813865586497 1.2433572318251633 24.99436695173022 1.0259979257974101 0.9115363806861662 0.3706423871358788 0.05954230835190943 118.50457670813131 617533.4938610065 0.04443420795710977 0.015059839099752136 17.512866288342764 -1.2433572318251633 -0.11446154511124396 ALCELESGIPAAESQIVYAERPLTDNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALCELESGIPAAESQIVYAERPLTDNHR 28 1 Q5TDH0;Q5TDH0-3;Q5TDH0-2 Q5TDH0 DDI2 Protein DDI1 homolog 2 0 ; 57.922 0.031371 130187000.0 121907.0 131526.0 114337.0 122061.0 124863.0 124874.0 116606.0 117885.0 128824.0 121776.0 False True 121250.66625714097 135903.76340085393 130434.65576498015 137513.91008480373 140763.56292901622 116241.75430177743 110965.32230182219 126682.1773079007 97077.05135316042 114004.15142232121 1.063563604872383 1.1920948641370697 1.1441219827319549 1.2062184435318684 1.2347231322091636 1.0196273806834206 0.9733445748897172 1.1112067036805926 0.851522073029995 1.0 16.79872683503162 2.66802032126794 7.097488351571824 1.0049581879895753 1.1700646175872622 0.5890992560146625 0.07348294801040531 0.20209728224341555 17.616000956249398 0.023479361519842985 0.022142462804512705 465.60787948043094 -2.66802032126794 0.16510642959768695 ALDDISESIKELQFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALDDISESIKELQFYR 16 1 H0YG54;H0YGR4;F5GYG5;Q9Y3B8-2;Q9Y3B8-3;Q9Y3B8 H0YG54 REXO2 Oligoribonuclease, mitochondrial 0 ; 176.04 3.0173e-09 720120000.0 933420.0 629360.0 737820.0 908300.0 764320.0 1029200.0 898100.0 805690.0 870350.0 720940.0 False True 928394.5704327108 650307.8671438465 841698.6427535955 1023290.6868699035 861651.6215204332 958053.8264762019 854655.4719248298 865814.6790109224 655863.9045924918 674928.9919722126 1.375544066820786 0.9635204219685087 1.2470921426772092 1.5161456968676688 1.2766552211701527 1.4194883282116377 1.2662894646552934 1.2828233626191137 0.9717524545448691 1.0 19.36437620131394 1.241315159063959 22.39652751067205 0.9858757726650004 1.290289083763292 0.4500840319192484 0.13595307041544913 16.73460744578508 136108.12494107577 0.1032819691608118 0.03373059579641891 17.4307132752283 -1.241315159063959 0.30441331109829173 ALDEEVHK ddPTM_BT-474_Trastuzumab_2h_R1 4 ALDEEVHK 8 0 Q06210-2;Q06210;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ;;; 143.28 0.0006039 2701330000.0 4396740.0 4423480.0 3964780.0 3886680.0 3864060.0 4722030.0 4591540.0 4249520.0 5768900.0 4598450.0 False True 4373068.440363738 4570712.857749874 4522986.561514459 4378733.289489725 4356125.136922023 4395607.180562987 4369429.668813861 4566640.761025329 4347231.894299562 4304972.984068881 1.0158178591472822 1.0617285810304498 1.0506422637847823 1.0171337440894064 1.0118821077489772 1.0210533717237043 1.0149726107419281 1.0607826757391474 1.0098163009122394 1.0 22.037572753317455 3.739354064624111 24.984430662781033 1.0236259044179463 1.044629469641284 0.22116459166369373 0.01884069755240288 112.88064445362681 3554213.73079344 0.00509854892978006 0.008600628222848537 5487.241376086129 -3.739354064624111 0.021003565223337572 ALDELFEAIEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALDELFEAIEQK 12 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 116.77 0.0018756 6446800.0 13022.0 14096.0 12075.0 14141.0 13784.0 13678.0 13977.0 16326.0 20455.0 12445.0 False True 12951.890998880208 14565.176838788067 13775.055042218497 15931.249150090596 15539.310695831116 12732.472054548682 13300.87911267491 17544.32902174821 15414.139332957324 11650.749445299462 1.111678785960477 1.2501493493763565 1.182332098625303 1.3674012324175522 1.333760610747707 1.092845753342129 1.1416329202788924 1.5058541172925606 1.3230169788928228 1.0 13.508135140114922 5.609157963647246 1.0508146442525168 1.2729729135866668 0.4168136000004768 0.04652330282776407 0.14169919228746633 24.42531443689915 5.6151061054192555 0.042659991483627334 36.205816346941155 406591.1895477972 -5.609157963647246 -0.85615931358619 ALDEYYDKHFTEFVPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALDEYYDKHFTEFVPLR 17 1 P38606;P38606-2 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 230.33 4.951500000000001e-16 310510000.0 327200.0 431770.0 410870.0 441650.0 518590.0 499880.0 474910.0 424230.0 632900.0 473170.0 False True 325438.39155533735 446141.2034395236 468716.92465393944 497562.84471660503 584629.3625762528 465324.47219094884 451936.78896762134 455888.1967962909 476930.27542550437 442971.88549878186 0.7346705337493304 1.00715467063372 1.0581189009911294 1.123237977408779 1.3197888663249273 1.0504605087228012 1.0202380868003509 1.0291583094104617 1.0766603729003832 1.0 18.75685561127894 4.797917940082982 1.963827361192254 1.0883641926763081 0.5924737229031164 0.6023256270652421 0.08539343222406545 0.6689868762255946 2.4238438093548598 0.023544327344894575 0.6306752579807686 62793.969843385144 -4.797917940082982 -0.49589046977319173 ALDIDLDKPLADSEKLPIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALDIDLDKPLADSEKLPIQK 20 2 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3 O14617-5 AP3D1 AP-3 complex subunit delta-1 0 ; 163.66 1.0852e-11 317480000.0 830980.0 690650.0 619300.0 605860.0 578200.0 943110.0 881400.0 762080.0 1430400.0 890850.0 False True 826506.0960105571 713637.8677432587 706492.0569479021 682561.8138797753 651830.3427401007 877915.0255421398 838763.3147250239 818950.2793638293 1077897.0863780088 833995.1903049424 0.9910202188436519 0.8556858313323411 0.8471176634598815 0.8184241609717234 0.7815756617274556 1.0526619766489762 1.0057172085349055 0.9819604344053685 1.292450003199522 1.0 19.66967953803095 2.724062015133748 23.88272558849436 1.0534359049426343 0.85570546388299 0.5360554381131759 0.0962489037933449 369.01282254894414 607852.5668230464 0.0310654255201512 0.02942470673141413 529.7390826483107 -2.724062015133748 -0.19773044105964432 ALDKLDGTEINGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALDKLDGTEINGR 13 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;; 150.11 4.0206e-05 7048250000.0 5593040.0 6135090.0 5591030.0 5301940.0 5568180.0 6451840.0 6133880.0 5787140.0 8403940.0 6423120.0 False True 5562927.694085162 6339292.761909783 6378198.4258960625 5973165.060379848 6277254.717811444 6005839.486797724 5837160.790702903 6219005.773301483 6332901.594026559 6013190.982490297 0.9251207404327837 1.0542310697213935 1.060701122659936 0.9933436469543375 1.0439140775821139 0.9987774385157597 0.9707259935199175 1.0342272166991693 1.0531682117643064 1.0 22.519699349430766 4.750454867357337 24.67428304767348 1.0225194011235705 0.9251206694754422 0.5016356205541106 0.02932953381101655 1361.2023964115035 2823714.0415463625 0.007116377331204009 0.11869788391791986 56293.06136197777 -4.750454867357337 -0.09739873164812829 ALDLDSSCK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALDLDSSCK 9 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;; 110.87 0.0051568 608650000.0 828700.0 835600.0 776150.0 707420.0 729980.0 969080.0 880760.0 780040.0 1173520.0 910180.0 False True 824238.3712772265 863412.4408691323 885425.1735832623 796979.2994665933 822938.6260695582 902089.7805689444 838154.2739700625 838250.5457628604 884321.7203623608 852091.5331556987 0.9673120072261265 1.0132860230068323 1.0391197883449368 0.9353212283602929 0.9657866485562021 1.05867708511089 0.9836434718063447 0.9837564547301878 1.037824794581984 1.0 19.700648890025004 ALDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALDLLDR 7 0 P27361;E9PBK7;E9PQW4;P27361-3;B3KR49;E9PRH7;H0YEX6 P27361 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 0 128.37 0.0087583 109180000.0 103040.0 128010.0 119220.0 126670.0 115920.0 124810.0 134820.0 109980.0 126250.0 128010.0 False True 102485.24408882023 132270.73546632082 136005.13972118334 142706.4090122323 130681.72488833017 116182.17847113761 128298.24153758542 118187.2660671241 95137.37916332729 119840.29220512512 0.8551818608169024 1.1037250747012455 1.1348865829565034 1.1908049153282128 1.0904656729695574 0.9694750933373386 1.0705768417018144 0.9862064243370534 0.793868050659331 1.0 16.87075352105615 1.5152181550811719 3.984664568191583 0.8934455355619156 1.0658337712547172 0.2953127943484175 0.09907709889996688 0.2134753406507681 7.323851770158527 0.06412666259052138 0.025780411491337255 32.75051661706934 -1.5152181550811719 0.1723882356928016 ALDMLQMASS(ph)PIASSSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALDMLQMASSPIASSSNR 18 0 Q96MY7;Q96MY7-2 Q96MY7 FAM161B Protein FAM161B 1 ALDMLQMAS(0.04)S(0.96)PIASSSNR;ALDMLQMAS(0.009)S(0.991)PIASSSNR 78.32600000000002 0.04732 265410000.0 195567.0 279810.0 242320.0 275840.0 264510.0 254970.0 241310.0 200139.0 208810.0 265380.0 True False 194514.08900153614 289123.3067012828 276436.54971680255 310761.31571748765 298193.78062639915 237344.52403482064 229636.91340628066 215074.38846524977 157351.57341064882 248443.22119675126 0.7829317622938616 1.16373996967426 1.1126749540003844 1.250834352495311 1.2002492126369937 0.9553270276062749 0.9243033973723227 0.8656882946100771 0.6333502385482128 1.0 17.922556652753695 2.3078604579295368 1.9301610673838256 0.8310558669123931 1.1116740602832982 0.38256876428445674 0.14671154082187246 0.3316330330303423 2.516624723841747 0.06839180066085952 0.047377332596600076 203.17041043011372 -2.3078604579295368 0.2806181933709051 ALDMSYDHKPEDEVELAR ddPTM_BT-474_Trastuzumab_2h_R1 5 ALDMSYDHKPEDEVELAR 18 1 O15355 O15355 PPM1G Protein phosphatase 1G 0 ;;;; 269.16 6.809199999999999e-32 3806700000.0 2637540.0 2642800.0 2393695.0 2243816.0 2185420.0 2883390.0 2900550.0 2575150.0 3993090.0 2771190.0 False True 2623339.7776982444 2730764.000393666 2730706.4496300817 2527882.8755363645 2463720.283000815 2684068.0360699743 2760239.315322973 2767320.7693467387 3009046.4741646782 2594330.2816648795 1.0111818823680185 1.052589186385795 1.0525670031025056 0.9743874530555634 0.9496556010670133 1.0345899498761995 1.0639506214110963 1.0666802098809272 1.1598548170334193 1.0 21.306930728708554 2.2585817749316215 2.875554391500988 1.0789333967050267 1.009970490591064 0.29575667973968434 0.0465540658487092 0.33040473589761854 5.634647536583037 0.01937519989044347 0.01430656516158568 181.37681649082717 -2.2585817749316215 -0.06896290611396272 ALDSNSLENDDLSAPGREPGHFNPESR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALDSNSLENDDLSAPGREPGHFNPESR 27 1 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ; 297.14 6.464899999999998e-71 798170000.0 135607.0 145864.0 149732.0 164062.0 149307.0 146426.0 152178.0 120710.0 146602.0 165748.0 False True 134876.90697935398 150718.99506335013 170812.96410612512 184832.23237834426 168320.36143807718 136303.9152697283 144816.56876358614 129717.99315296012 110473.9014661555 155169.82073599796 0.8692212592603955 0.9713164218948197 1.1008130530532867 1.1911609583722673 1.0847493451993686 0.8784176885892804 0.933277927864423 0.8359743701299949 0.711954817903109 1.0 17.243488466831213 2.7085633989917373 8.053445041216355 0.8645907682337812 1.0508335855277202 0.39896489876934726 0.10488158200308983 0.2829042874227849 68.3980876274383 0.035763105479468676 0.0341094772260873 511.167694655284 -2.7085633989917373 0.186242817293939 ALDVMVSTFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALDVMVSTFHK 11 0 P26447 P26447 S100A4 Protein S100-A4 0 ; 169.82 1.6437000000000002e-05 1674620000.0 2934800.0 3264700.0 3420600.0 2823500.0 2698000.0 4478600.0 4317300.0 3296700.0 5172400.0 4714300.0 False True 2918999.362886936 3373363.5659471774 3902190.747611812 3180954.8105000244 3041574.30770113 4169004.9234903962 4108455.7053123945 3542716.4943034025 3897731.3266090653 4413429.337884713 0.6613903020561255 0.7643406765324983 0.8841629601080393 0.7207444748678373 0.6891634769344486 0.9446180292734753 0.9308987163441281 0.8027128618312422 0.8831525392626285 1.0 22.073468668668077 2.7357317982464973 24.99980419996576 0.8937375940375847 0.7515918761780815 0.5585815325338102 0.0737440415248622 232.82756843560867 2057613.7756814098 0.024464106470622086 0.02401015479539254 544.1664950309234 -2.7357317982464973 -0.14214571785950314 ALDYCHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALDYCHSK 8 0 P19784 P19784 CSNK2A2 Casein kinase II subunit alpha 0 118.26 0.00192 284970000.0 251110.0 282640.0 271390.0 241790.0 239440.0 249030.0 282960.0 245620.0 360580.0 300560.0 False True 249758.05166094354 292047.50154051185 309599.353035833 272400.5892087127 269931.2647279311 231815.14225356482 269272.1437878296 263949.4116330878 271719.8905244565 281378.0034776381 0.8876246493119797 1.0379187354057748 1.1002969287200792 0.9680948256154682 0.959318999323923 0.8238566603945209 0.9569765243189289 0.9380598638516694 0.9656756646439523 1.0 18.102150025775657 3.3781178616997023 3.4848817263837484 0.9333219655220406 1.0139728227637281 0.16462952311157975 0.06563757185246338 0.3495446536719756 8.308032716110194 0.01875680652396769 0.0263428337854033 2388.4593908213446 -3.3781178616997023 0.08065085724168752 ALDYY(ph)MLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALDYYMLR 8 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 ALDY(0.336)Y(0.664)MLR 76.899 0.042872 0.0 16950.0 22684.0 21661.0 22958.0 18176.0 19803.0 21145.0 19259.0 22989.0 20629.0 True False 16858.743083322046 23439.023227232447 24710.680519212823 25864.48044606323 20490.605862407592 18434.06522124781 20122.135568255766 20696.204375220426 17323.668986817695 19312.43955862455 0.8729473576937756 1.2136749039954948 1.2795214423429757 1.3392653148531237 1.0610055658792676 0.9545176913196098 1.0419261381853555 1.0716514768833498 0.897021266227409 1.0 14.237242797428127 3.0154107446865774 24.45813597314807 1.0076445303328365 1.1881059581374032 0.32574943865493333 0.12311587248365857 223.32132609506635 354426.3871548777 0.03625183756811037 0.0433143122578268 1036.1216409479764 -3.0154107446865774 0.18046142780456664 ALDYYGLYDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALDYYGLYDDR 11 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 0 ; 140.3 0.0032088 104570000.0 175382.0 207208.0 202659.0 197217.0 180544.0 194935.0 181683.0 163582.0 254830.0 193267.0 False True 174437.76279877202 214104.79302011908 231191.62565639432 222184.65197888517 203535.20823187294 181459.60227763187 172894.29919354056 175789.31949256515 192030.56104705532 180932.5345957966 0.9641039030844624 1.183340483779931 1.2777780744235776 1.2279972337492857 1.1249232134318503 1.0029130619488238 0.9555733001794648 0.9715738514650148 1.0613379261836557 1.0 17.465092325622606 2.808642584625835 3.387781643208019 0.989511747657791 1.173019647826611 0.48941436093412416 0.08052116505020657 0.20281229426735825 4.5802021604491 0.026952952392793987 0.028197976977192278 643.6393456223359 -2.808642584625835 0.18350790016882002 ALEAASLSQHPPSLCIS(ph)DS(ph)EEEEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEAASLSQHPPSLCISDSEEEEEER 26 0 O43159;E9PPY3 O43159 RRP8 Ribosomal RNA-processing protein 8 2 ALEAASLSQHPPSLCIS(1)DS(1)EEEEEER;ALEAASLSQHPPSLCIS(1)DS(1)EEEEEER 223.86 1.1465e-34 405100000.0 239542.0 349120.0 341260.0 365483.0 331185.0 383690.0 362250.0 308330.0 370240.0 359870.0 True False 238252.3324876184 360740.24815250305 389306.44171490596 411753.11032618413 373359.44666271226 357166.4134091083 344726.5835706147 331339.15026801603 278999.3129618246 336902.7884997926 0.707184210461841 1.0707547116450333 1.1555453234699056 1.2221718679138736 1.1082112093083556 1.0601468008013482 1.0232227079676632 0.9834859240656598 0.8281300199508332 1.0 18.361972843941818 1.6570888764156282 2.330706176201602 0.9139042907848077 1.0668748136776518 0.1327307192827103 0.13413472444062902 0.4811316475980577 5.778752690141694 0.09553068102984952 0.03811537548146653 45.40345232698737 -1.6570888764156282 0.15297052289284407 ALEAELDAQHLS(ph)ETFDNIDNLSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 ALEAELDAQHLS(0.333)ET(0.333)FDNIDNLS(0.333)PK;ALEAELDAQHLS(0.333)ET(0.333)FDNIDNLS(0.333)PK 107.75 0.004099800000000001 161994000.0 144513.0 136389.0 102459.0 96993.0 83443.0 90987.0 77329.0 71144.0 113776.0 93553.0 True False 143734.9580649037 140928.62541610855 116884.336610407 109272.30385508368 94068.97144459051 84697.28285035981 73588.3008445331 76453.12654191197 85737.42932029096 87582.36744524707 1.6411403602986747 1.6090981498554648 1.334564707713323 1.2476518623842439 1.074062898601121 0.9670586137478997 0.8402182196152383 0.872928293354337 0.9789348223989321 1.0 16.418352827460073 3.746584811532522 0.8359050990089129 0.898338734494244 1.7200094695820585 0.9539259732155229 0.05913129653186338 0.15356668267298798 0.1901948081857991 0.025190653919011426 0.09016995776833345 5579.365485717882 -3.746584811532522 0.8216707350878145 ALEATTEHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEATTEHIR 10 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 ; 187.64 1.2077e-06 427440000.0 225900.0 302300.0 282550.0 288410.0 256630.0 291140.0 270400.0 253960.0 312840.0 288560.0 False True 224683.7794998495 312361.87275579124 322330.5840313736 324922.67642865685 289310.3093348185 271014.177069842 257319.71897168882 272911.7847827501 235744.77384123034 270143.853751355 0.8317190133322532 1.1562797687904993 1.1931812608553816 1.2027764908089347 1.07094907145696 1.0032217032014654 0.9525284969412269 1.0102461373559242 0.8726638439763054 1.0 18.043368332921457 2.71709686389999 2.8449996693953747 0.9663642652466738 1.1092816068167746 0.26259665425374734 0.10382308465874439 0.3604377241517494 5.857371621665497 0.03577413182093423 0.03521228641780217 521.310969968386 -2.71709686389999 0.14291734157010072 ALEAVFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEAVFGK 8 0 P38159;P38159-2;H3BT71;H0Y6E7;H3BR27;P38159-3;H3BNC1 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 136.11 0.0034444 0.0 282030.0 355530.0 309560.0 263490.0 281250.0 367030.0 327940.0 333890.0 426130.0 349320.0 False True 280511.58181647863 367363.6011275768 353143.3572562454 296847.8069837616 317065.52040064574 341658.07999568654 312076.2893475434 358806.5672590658 321115.97134945524 327026.0985321014 0.857765123565339 1.1233464325218552 1.0798629187131386 0.9077190117736813 0.9695419473364206 1.0447425496902623 0.9542855776598195 1.0971802216080464 0.9819276589569624 1.0 18.319046249977806 1.7561096460809666 24.99999999919248 1.036020449820498 0.997576923049687 0.03137699186239162 0.07940998586283332 24.902023498306946 35512.736429970995 0.03610438494350608 0.020022447437894848 57.030823950335076 -1.7561096460809666 -0.038443526770810865 ALECFCQAASEVGKEEFLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALECFCQAASEVGKEEFLDR 20 1 Q12769;G3V198;E9PR16 Q12769 NUP160 Nuclear pore complex protein Nup160 0 ; 96.848 0.00093536 152687000.0 72618.0 83205.0 83710.0 82644.0 70567.0 88550.0 84997.0 78416.0 102689.0 86739.0 False True 72227.03275661824 85974.42812651531 95495.64037963655 93106.72192631979 79553.28916662183 82428.7469242787 80885.37038992836 84267.80010837984 77382.67191210235 81203.242759006 0.8894599563095374 1.0587560940351752 1.176007720074029 1.146588716938815 0.979681185919128 1.0150918131300464 0.9960854719802137 1.0377393469183096 0.9529505138330215 1.0 16.309249720493447 3.209840061665906 24.999397528553285 1.0021915051897772 1.0748001733492982 0.17642194018102064 0.07376214123870031 375.60138671032536 326936.1194873705 0.02232538087570327 0.026688550126299466 1621.2129406854233 -3.209840061665906 0.07260866815952105 ALEDWVSSETSALPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEDWVSSETSALPR 15 0 Q5TAQ9;Q5TAQ8;V9GY54;Q5TAQ9-2;V9GYQ9 Q5TAQ9 DCAF8 DDB1- and CUL4-associated factor 8 0 35.809 0.094837 52228000.0 110540.0 105520.0 109710.0 92133.0 84418.0 88706.0 105790.0 54032.0 142050.0 97400.0 False True 109944.86492214866 109032.1694118129 125156.21438358525 103797.02835339075 95168.13191531277 82573.96301146335 100672.5335429547 58064.14220893663 107043.68087248034 91183.84861166457 1.2057493360516494 1.1957399371917397 1.3725699922647794 1.1383269069442705 1.043695055257171 0.9055766374057191 1.1040610269884605 0.6367809989707854 1.173932472716302 1.0 16.476490682103588 3.194072015203642 1.933176983995315 0.9274065753014691 1.2523815079932576 0.429783747419457 0.14370026305825664 0.27314099376811835 2.1017119364267827 0.045947494984774025 0.061910728708412605 1563.4068670481015 -3.194072015203642 0.32497493269178857 ALEEALSIQT(ph)PPS(ph)SPPTAFGSPEGAGALLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEEALSIQTPPSSPPTAFGSPEGAGALLR 30 0 E7EMV7;A0A0A0MRZ4;Q15025-7;Q15025-8;Q15025-5;Q15025-6;Q15025-4;Q15025-3;Q15025-2;Q15025;H0YC17 E7EMV7 TNIP1 TNFAIP3-interacting protein 1 2 ALEEALS(0.012)IQT(0.965)PPS(0.566)S(0.442)PPT(0.014)AFGS(0.001)PEGAGALLR 72.495 0.0097385 25722000.0 17900.0 18781.0 20157.0 17983.0 17303.0 18793.0 16656.0 17497.0 20663.0 18858.0 True False 17803.62838887697 19406.114231645755 22994.930392215185 20259.645956161465 19506.434487083996 17493.884143963525 15850.285647901068 18802.71498796572 15570.880520014522 17654.466294853934 1.008448972148567 1.0992184021616336 1.3024993227304715 1.1475649061148288 1.104900831398675 0.9909041628215509 0.8978059932925436 1.065040124914254 0.881979679247129 1.0 14.10774558776643 2.8014799422168557 3.0519201452188267 0.9712941915664979 1.146366486202879 0.5018023488416099 0.08293139627201 0.23052795151160257 4.250148499863036 0.0280447724195112 0.02916075861678541 633.1111209551774 -2.8014799422168557 0.1750722946363812 ALEEGDGSVSGSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEEGDGSVSGSSPR 15 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 ALEEGDGSVSGS(0.001)S(0.999)PR;ALEEGDGSVSGSS(1)PR 285.18 4.9072000000000005e-34 5135200000.0 4543300.0 5762400.0 5197000.0 5108400.0 4696700.0 5344400.0 5125800.0 4706500.0 4944300.0 4988600.0 True False 4518839.377608081 5954198.000555636 5928692.42686621 5755122.916223953 5294796.905478086 4974954.20736438 4877845.471542466 5057722.92912275 3725843.515225662 4670223.277044664 0.9675852972210829 1.2749279097258657 1.2694665918880672 1.2323014500209972 1.1337352823158071 1.0652497562199106 1.0444565885143688 1.082972403906842 0.7977870209202055 1.0 22.15506009420234 2.114615006780967 0.9011664925950623 0.9391672498733655 1.1935344350983215 0.45538633593782885 0.10428244416378613 0.5320050485164138 0.8055692328693053 0.0829131181288562 0.0435549915288085 130.2012059519526 -2.114615006780967 0.25436718522495594 ALEEGLTPQEICDKYHIIHADIYR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALEEGLTPQEICDKYHIIHADIYR 24 1 P56192;P56192-2;H0YHV5 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ;; 160.57 1.3156e-11 2767070000.0 1609700.0 1919996.0 1847989.0 1923804.0 1868404.0 1994858.0 2101760.0 889179.0 2547450.0 2020120.0 False True 1601033.5540544821 1983901.9061979079 2108169.788191662 2167357.3891479326 2106334.1745018624 1856958.1618506273 2000089.8392971032 955534.0521394749 1919665.0815811371 1891194.2120882566 0.8465727865604141 1.0490207158614786 1.1147293994009326 1.1460258154844587 1.113758788514929 0.9818971261551049 1.0575803513530238 0.5052543234490836 1.0150544398406565 1.0 20.85086609465808 1.863324459857051 19.371946948092347 0.7840374214363084 1.051358686371429 0.24349942633915178 0.15537515337934618 3.1090815134017937 469.7569069812953 0.06190176704894085 0.0399220070721376 73.00026889815874 -1.863324459857051 0.26732126493512065 ALEELQEALAEKEELR ddPTM_BT-474_Trastuzumab_2h_R1 5 ALEELQEALAEKEELR 16 1 Q9UJC3;Q9UJC3-2 Q9UJC3 HOOK1 Protein Hook homolog 1 0 ;;;; 211.29 6.8145e-12 399628000.0 527730.0 554228.0 475056.0 487216.0 476275.0 613580.0 617606.0 570698.0 827861.0 655902.0 False True 524888.7603163151 572675.1439420994 541939.7555392261 548897.495644618 536925.7981469064 571164.6588119585 587730.0382959644 613286.3827057251 623845.7493190601 614041.7728140465 0.8548095317861542 0.9326322235662062 0.8825779931153717 0.8939090464955117 0.8744124942612113 0.9301723174213545 0.9571499274430467 0.9987698066454673 1.015966302194855 1.0 19.227977278862422 2.1331734252587253 1.474941023722413 1.0084635291621387 0.8900500402599932 0.8685407693338641 0.019824272497699302 0.13029453486365505 0.5418804040405316 0.011682876301412933 0.0062692541562641615 135.88559653407165 -2.1331734252587253 -0.11841348890214543 ALEENNNFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALEENNNFSK 10 0 E5RGX5;Q93045;Q93045-2 E5RGX5 STMN2 Stathmin;Stathmin-2 0 ;; 240.38 6.5877e-12 427550000.0 414310.0 432192.0 373599.0 353617.0 340572.0 450210.0 464096.0 422472.0 525134.0 477377.0 False True 412079.40099416825 446577.24945441895 426198.49181927904 398384.87594283186 383941.82547160477 419088.042380345 441645.9034611127 453999.0059093477 395721.76213508745 446910.39115698787 0.9220626979098716 0.9992545671142118 0.9536553641456207 0.8914200336928163 0.8591024802033214 0.9377451289404689 0.9882202611529212 1.0158613782373875 0.8854610901094059 1.0 18.769626063802477 2.3281820276908185 5.556034751380612 0.9785761712148492 0.9262285559622592 0.17700063805541377 0.04740451375768075 0.3485924180273045 16.99712293627096 0.017769289018663263 0.014692940655673335 212.90312088950475 -2.3281820276908185 -0.05234761525259002 ALEEVPIHIEDPPFPSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEEVPIHIEDPPFPSLR 18 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 0 ; 118.53 0.00010008 86283000.0 68012.0 89296.0 83856.0 82583.0 77106.0 81878.0 84684.0 71332.0 84910.0 78242.0 False True 67645.83094884359 92268.16337942805 95662.1959105818 93037.99933257414 86924.99205693223 76217.9665800801 80587.51139570444 76655.15605655653 63985.06823570796 73248.52857365365 0.9235111239241295 1.259658933443961 1.3059947793270756 1.270168850409351 1.1867131497327823 1.0405392171590258 1.1001929044167928 1.0465077940709404 0.8735338372206208 1.0 16.160512158322362 2.103663704957766 1.0124983744128853 0.9592693131039638 1.2011902732952005 0.4020955181040251 0.11023228582583854 0.5404727491873319 1.0313858959498738 0.08586832168018749 0.04357042544645369 126.95906195826404 -2.103663704957766 0.24192096019123666 ALEFAPACHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEFAPACHR 10 0 Q99615;A0A6I8PUD4;A0A6I8PU73;A0A6I8PS32;A0A6I8PIK4;A0A6I8PR89;A0A6I8PLE7;A0A6I8PU89;A0A6I8PRZ0;K7EIH8;K7EK03;Q99615-2;K7ER44;K7EPP7;A0A6I8PUC2 Q99615 DNAJC7 DnaJ homolog subfamily C member 7 0 90.15 0.011027 230550000.0 85601.0 105620.0 105520.0 99881.0 102610.0 103420.0 91506.0 69115.0 137990.0 102880.0 False True 85140.13372716507 109135.49785136164 120376.29880371802 112525.92435897022 115676.775282881 96270.81882449362 87079.50519313375 74272.7122588588 103984.2134712676 96314.1103200007 0.8839840127712291 1.1331205520018017 1.2498303561520885 1.168322315236119 1.20103663833418 0.9995505176202817 0.9041199145568052 0.7711508938003991 1.079636339117739 1.0 16.555459552461834 2.503003639453287 3.7122041205674656 0.9052632803623967 1.1359624689355399 0.35040971347193406 0.11817383266661946 0.2156318741767195 6.371097234411434 0.04233413196951932 0.03747123592550757 318.42242058936125 -2.503003639453287 0.2306991885731432 ALEHAFQLEHIMDLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALEHAFQLEHIMDLTR 16 0 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 160.64 5.0378e-09 1404407000.0 231796.8 324596.7 289080.8 323932.1 290876.8 292016.4 282800.8 200118.5 371873.6 311322.5 False True 230548.8317838457 335400.70493665093 329780.86390464223 364941.8706464934 327918.2363181318 271829.99360066577 269120.64490003255 215052.358651153 280230.33413094317 291453.6315133978 0.7910309114582009 1.150785815208595 1.131503705039553 1.2521438444650754 1.1251128854198469 0.9326697773129996 0.9233737919222371 0.7378613110239022 0.9614919967743181 1.0 18.152906852179115 2.590989574654351 3.173089987166068 0.8728600789794153 1.1046135663042893 0.3073300889105063 0.12987869563109883 0.2638861649466338 5.041152792503 0.04573006022461088 0.04208311266225536 389.9326261357817 -2.590989574654351 0.231753487324874 ALEHFTDLYDIK ddPTM_BT-474_Trastuzumab_2h_R1 4 ALEHFTDLYDIK 12 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;; 256.63 3.5595e-21 6350680000.0 7502110.0 7468630.0 7237520.0 6984000.0 6559730.0 9022730.0 8693390.0 8176060.0 10656630.0 8860630.0 False True 7461719.473322783 7717218.834667829 8256499.906348437 7868173.683914351 7395072.732934146 8399009.912321819 8272857.513725178 8786199.114391433 8030446.328026062 8295137.007432997 0.8995293828946506 0.9303304849278179 0.9953421985616465 0.9485284784162024 0.8914949477395813 1.0125221445764843 0.9973141500028444 1.0591987940064655 0.9680908610466886 1.0 22.98383437911433 2.7111747639801997 22.769890284407712 1.0141859345304114 0.9372154346538525 0.5359084661068816 0.03421153259950152 188.67531313475163 156872.86367681454 0.011368825424085979 0.010722788052966066 514.2505489669976 -2.7111747639801997 -0.0769704998765589 ALEHFTDLYDIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEHFTDLYDIKR 13 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 186.16 5.221599999999998e-06 8538000000.0 10836900.0 14763500.0 13424800.0 14709600.0 13280800.0 14084400.0 16484400.0 13746600.0 20035900.0 16808900.0 False True 10778555.33449279 15254894.172775796 15314895.14954657 16571833.851790745 14972031.158531196 13110778.579111388 15686986.595476726 14772441.0958204 15098320.912305024 15736141.611176701 0.6849554103425993 0.9694176977881861 0.9732306386127754 1.053106553135013 0.9514423248388417 0.833163484611715 0.996876298084083 0.9387587796825732 0.9594677834864767 1.0 23.907578509961912 4.73960989976159 24.74517021175097 0.9611630951396021 0.6849553089376349 0.7110751666845372 0.053323844706693234 42.558251955550176 1003493.3262191413 0.012918768919453824 0.07923528151232032 54904.74764436465 -4.73960989976159 -0.2762077862019672 ALEHSALAINHK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEHSALAINHK 12 0 Q9NRF8;P17812;B4E1E0;P17812-2;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3 Q9NRF8;P17812 CTPS2;CTPS1 CTP synthase 2;CTP synthase 1;CTP synthase 0 161.19 3.8189e-05 344700000.0 541130.0 592300.0 577490.0 565610.0 519960.0 704080.0 643230.0 477870.0 804120.0 657200.0 False True 538216.6162051946 612014.3474470899 658795.5723669361 637216.1680066995 586173.8239556266 655408.6068260439 612114.5075227786 513531.08597469126 605955.4006559595 615256.933342773 0.8747835043174433 0.9947297044211013 1.0707649709652387 1.0356911616495228 0.9527301395383974 1.0652600097736753 0.994892498321114 0.834661192982594 0.9848818726246984 1.0 19.230829484971323 1.9625586093755807 24.471358342780437 0.9198017042839688 1.0039977994652463 0.1118280507295435 0.06822176268009103 619.5673169391841 404942.5294728324 0.027694574802625646 0.017882080125362517 91.73997329506881 -1.9625586093755807 0.08419609518127746 ALEHVPNSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEHVPNSVR 10 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 83.397 0.015631 789330000.0 293290.0 339910.0 317860.0 316980.0 288800.0 298260.0 319550.0 316340.0 425920.0 314530.0 False True 291710.9592275825 351223.69887006615 362611.92511135153 357109.6354993081 325576.9681482894 277641.98822851956 304092.14570045593 339946.89714197133 320957.72303559934 294456.42611731886 0.9906761522377423 1.1927866662693576 1.2314620872525222 1.2127758263187867 1.105688106187132 0.9428966855622298 1.0327237537661955 1.1544896527628434 1.090000742275265 1.0 18.167694633193584 3.003466571189921 23.368160558539888 1.057211359470988 1.1641134807406446 0.2953893911353648 0.08079935290807383 64.41850385954534 434228.8056855431 0.024849867064817177 0.02953455785760447 1008.0140168379658 -3.003466571189921 0.10690212126965659 ALEIIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEIIPR 7 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 100.74 0.022265 253400000.0 346880.0 459520.0 431030.0 464890.0 461760.0 401510.0 424250.0 385340.0 418390.0 435930.0 False True 345012.43662199116 474814.8454142939 491715.2774200781 523745.02633375424 520562.39893405203 373754.55875287566 403727.406707615 414096.0275168724 315283.39063876873 408108.5741815499 0.845393746783938 1.1634522660214173 1.2048638733116526 1.28334727439655 1.2755487923232809 0.9158213828328154 0.9892647012312319 1.0146712265169389 0.7725478232626222 1.0 18.638593495739165 2.7254156689300633 24.585087733786203 0.9498605726979024 1.1649711830704463 0.4034008201415473 0.13070170013403762 666.3721232218737 1246318.1623847676 0.04324522122598137 0.04100806587843646 531.3928039176295 -2.7254156689300633 0.21511061037254398 ALEKEEEEEKQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEKEEEEEKQK 12 2 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 83.729 0.0071067 799180000.0 341960.0 230790.0 186210.0 176200.0 210270.0 384290.0 410430.0 336560.0 660710.0 316610.0 False True 340118.9253553277 238471.70563449909 212426.74943366498 198506.90193380692 237046.63813206693 357724.93682135653 390575.93290514196 361675.8162170511 497886.8735604122 296403.6787365416 1.1474855062701244 0.8045504247822264 0.7166805430322628 0.6697180776566871 0.7997425644057738 1.2068842679220602 1.3177162124641015 1.2202136551028662 1.6797594270176348 1.0 18.1772038278229 2.6611177690531713 3.669967760441314 1.3068179285035209 0.8096383996967016 0.5779486091765865 0.19619730646193226 0.16623504779421364 4.323671980925884 0.06469778640072903 0.061471448295020784 458.2661393925999 -2.6611177690531713 -0.49717952880681926 ALELDHK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALELDHK 7 0 Q99615;A0A6I8PUD4;A0A6I8PU73;A0A6I8PS32;A0A6I8PR89;A0A6I8PLE7;A0A6I8PU89;A0A6I8PRZ0;K7EIH8;K7EK03;Q99615-2;K7ESP1;K7ER44;K7EPP7;A0A6I8PUC2;K7ELJ8;K7EJV7;K7EN19;K7EJL5;K7EJE9 Q99615 DNAJC7 DnaJ homolog subfamily C member 7 0 ;; 103.92 0.0082681 687100000.0 1137300.0 1776880.0 1489780.0 1826160.0 1546260.0 1555850.0 1626630.0 1293610.0 1554140.0 1768210.0 False True 1131176.9031659076 1836022.3766533555 1699528.0746001063 2057351.668759597 1743167.045598944 1448297.751576952 1547943.6925699653 1390145.7470184816 1171143.0214090582 1655361.3239592584 0.6833413870395271 1.109136929852871 1.0266810333197895 1.2428414503722163 1.053043236161682 0.8749133682264267 0.935109253892453 0.8397838749147287 0.7074848279093189 1.0 20.65871472496018 2.7242987987329608 8.351915817936774 0.8650244120111252 1.040269852790331 0.20050621038011252 0.14906479808242926 0.28974102455909295 138.85991440923004 0.04729533038522432 0.04593333203750836 530.0279827659914 -2.7242987987329608 0.17524544077920567 ALELDSNLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALELDSNLYR 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;; 253.05 1.0481e-16 1105810000.0 1081310.0 1301480.0 1138860.0 1139310.0 1019640.0 1162760.0 1183290.0 974500.0 1330220.0 1208030.0 False True 1075488.3471048358 1344798.9750387254 1299201.5888514272 1283546.5291839144 1149485.1101202283 1082381.1380426255 1126049.742093231 1047222.1384107327 1002405.1050347826 1130932.4911534842 0.9509748420154605 1.1891063220467828 1.1487879241371148 1.1349453121421713 1.0164047094869664 0.957069627505936 0.9956825459534963 0.9259811231903224 0.8863527335857057 1.0 20.109081382308034 3.023795249450877 2.850106353109218 0.9503854596773945 1.114974898359913 0.5398711166379474 0.06605361462158482 0.19018900005667203 3.15009223335802 0.020393331928619723 0.023968092715486354 1056.319384151859 -3.023795249450877 0.16458943868251852 ALELDSNNEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALELDSNNEK 10 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;; 179.1 4.9868e-06 768320000.0 607450.0 627740.0 581309.0 575903.0 575197.0 727530.0 705760.0 610959.0 956830.0 741940.0 False True 604179.5566940403 648633.9464231574 663152.2543715948 648812.2607513355 648444.9284902769 677237.5635214058 671619.6925349819 656551.8629669405 721032.0673651216 694588.7539932077 0.8698378043419178 0.9338388257715734 0.9547408456573998 0.9340955450564064 0.9335666964982534 0.9750194768169662 0.9669314233405362 0.9452382567273193 1.0380704599950554 1.0 19.405799526836095 7.999999999964803 0.1776666785886924 1.0095167257721498 0.515433666176995 0.6430934015487201 0.025459198913113545 39.36864256169137 0.4386364152405221 0.05895676464097815 5.239365446144709 99999999.99189565 -7.999999999964803 -0.49408305959515475 ALELENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALELENDR 8 0 Q03252 Q03252 LMNB2 Lamin-B2 0 98.582 0.017263 331590000.0 361550.0 372060.0 387530.0 393190.0 382560.0 409020.0 353870.0 323360.0 473720.0 398810.0 False True 359603.454971981 384443.79218498076 442090.8555288555 442967.8136853215 431276.74838923034 380745.41012951406 336751.9561853236 347490.76518880925 356978.05352278345 373357.6043615808 0.9631609233910782 1.0296932155496248 1.1840949544467012 1.1864437968064692 1.155130479066277 1.0197874790325108 0.9019555307066782 0.9307183277624617 0.9561290552343097 1.0 18.510198589869624 2.486276665286874 4.45417495876828 0.9398360070774547 1.1078687730034442 0.536129550622972 0.06844265998016062 0.15906156667976856 7.9373731748297285 0.02590034517282317 0.022792982718242268 306.39146647502076 -2.486276665286874 0.16803276592598948 ALENDFFNS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALENDFFNSPPR 12 0 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 ALENDFFNS(1)PPR;ALENDFFNS(1)PPR;ALENDFFNS(1)PPR;ALENDFFNS(1)PPR 273.02 9.811899999999999e-28 485948000.0 552960.0 707020.0 649910.0 698650.0 669670.0 670740.0 681190.0 655640.0 759050.0 694860.0 True False 549982.9247996318 730552.733297385 741411.6788810133 787099.018365801 754948.5050549343 624373.3225521263 648238.2373014967 704567.1860724601 571992.2982489003 650513.4399004243 0.8454597415909179 1.1230401840878377 1.1397330683813436 1.2099658056046991 1.1605425172622046 0.9598161763540206 0.9965024510496264 1.0830939729397597 0.8792935905159109 1.0 19.31121933841661 2.7331767146357935 24.91793833527789 0.9977003983096911 1.1060535006852759 0.22001542018062437 0.10288487076488088 714.2361279477436 3305641.72384885 0.03358481000689035 0.032516043853144314 540.9744009143235 -2.7331767146357935 0.10835310237558471 ALENDFFNS(ph)PPRK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALENDFFNSPPRK 13 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 ALENDFFNS(1)PPRK 125.52 0.000122 337380000.0 198330.0 205620.0 181180.0 182150.0 183590.0 223240.0 207020.0 210120.0 267160.0 232590.0 True False 197262.21331653438 212463.93740008533 206688.56915520885 205210.17132373957 206969.09827681628 207807.94425043452 197005.65170680138 225800.22136774054 201321.9977605907 217745.90706968275 0.9059284556536201 0.97574250767475 0.9492190780378924 0.9424295229488217 0.9505074105047693 0.9543598180421003 0.9047501941965591 1.0369895094996218 0.9245730515438065 1.0 17.73228607543883 1.7457486928802746 24.999999999999996 0.9892543158084726 0.943117785177885 0.29710132424741476 0.03273525153366823 1.8063494822847221 6300.772772642385 0.013951800671094014 0.007737037178160915 55.68634233066206 -1.7457486928802746 -0.046136530630587536 ALEQSQSLPLPAPTST(ph)SPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEQSQSLPLPAPTSTSPSR 20 0 O15068-4;O15068-10;O15068;H7BYP9;O15068-5;O15068-3;O15068-6;O15068-8;O15068-2;O15068-9;H3BLT1;H7C2S1;H0Y4M6;H0Y7A3 O15068-4 MCF2L Guanine nucleotide exchange factor DBS 1 ALEQSQSLPLPAPT(0.002)S(0.003)T(0.496)S(0.496)PS(0.002)R 269.0 3.646e-36 280490000.0 251270.0 279860.0 265790.0 255420.0 272560.0 278010.0 259230.0 228170.0 265970.0 281690.0 True False 249917.19023872155 289174.9709210573 303210.9217119054 287756.14581119776 307268.9004103115 258791.8230651468 246690.05454523268 245197.20402378344 200425.25731540748 263712.3030330579 0.9476887781280078 1.0965547211682707 1.1497792034143213 1.0911745204967773 1.1651671039852605 0.9813414849769285 0.9354514435161132 0.9297905376566619 0.7600148154266545 1.0 18.008605353605677 2.4352516641746633 2.676589146220934 0.9022292710267236 1.0935752517542758 0.5451166110569398 0.07888432171579907 0.2044925180460896 2.993748910634255 0.029730542571787737 0.02455685724186234 272.42795112914865 -2.4352516641746633 0.19134598072755227 ALEQSQSLPLPAPTSTS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALEQSQSLPLPAPTSTSPSR 20 0 O15068-4;O15068-10;O15068;H7BYP9;O15068-5;O15068-3;O15068-6;O15068-8;O15068-2;O15068-9;H3BLT1;H7C2S1;H0Y4M6;H0Y7A3 O15068-4 MCF2L Guanine nucleotide exchange factor DBS 1 ALEQSQSLPLPAPTST(0.206)S(0.788)PS(0.005)R 269.0 3.4214e-37 239340000.0 240620.0 285490.0 292180.0 311450.0 282180.0 292080.0 280360.0 263000.0 294080.0 304440.0 True False 239324.5286553952 294992.3620676507 333316.40432591364 350879.5380663121 318113.95038810425 271889.1970823638 266797.91572079377 282626.3954869401 221607.92447010922 285010.3785558029 0.8397046095938476 1.0350232281449827 1.1694886551671757 1.2311114417807507 1.116148653954438 0.953962443262851 0.9360989486512917 0.9916354517300637 0.777543349800225 1.0 18.12065492991898 2.6808936116647066 5.642090922079645 0.9353494754527906 1.08936682996892 0.2981277425629518 0.11179023807289463 0.2873147042469038 19.77296133474282 0.03833073726467319 0.036347678072382886 479.61594359282316 -2.6808936116647066 0.15401735451612952 ALERPYTSK ddPTM_BT-474_Trastuzumab_2h_R1 5 ALERPYTSK 9 1 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ;;;; 134.68 0.0002209 2498430000.0 2535240.0 3212280.0 2558280.0 2813230.0 2993260.0 3789520.0 3975050.0 3626300.0 5127330.0 4083190.0 False True 2521590.5495316433 3319198.7979357364 2918463.587031612 3169384.629553031 3374433.918558 3527559.401970557 3782761.6453343662 3896912.9199782903 3863768.224202012 3822597.3184051607 0.6596537221931827 0.8683098222128589 0.7634765956067888 0.8291181010076524 0.8827594531892414 0.9228174218053139 0.9895788989127909 1.019441127428022 1.0107704009518923 1.0 21.866121800535705 3.0044540894493834 0.6696195057195593 1.0278346730109105 0.7399514095923625 0.8337715728155862 0.04604061417801518 0.28376711369623514 0.28116529561777714 0.02986529116180609 0.04167662698073594 1010.3086921710842 -3.0044540894493834 -0.287883263418548 ALES(ph)PERPFLAILGGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 1 ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK 244.31 1.0068e-20 2204000000.0 953120.0 865460.0 778420.0 731150.0 742890.0 1144710.0 1024970.0 836680.0 1265850.0 1089450.0 True False 947988.5078215868 894266.3129183828 888014.7698520678 823713.5150335014 837492.6380459934 1065578.8920574954 975388.2853343626 899117.3101749534 953898.2290209732 1019920.3682749297 0.9294730621224804 0.8768001313974391 0.870670689079419 0.8076253212069016 0.8211353200667122 1.0447667535650764 0.956337686425571 0.8815563823827738 0.9352673587981924 1.0 19.960025085462497 2.7643661556411643 24.998493487465783 0.949565689006624 0.8595672056685357 0.4929464262981722 0.05095537210690716 790.634422039814 765906.7566965745 0.0168213331743273 0.01783542473412972 581.2542690964176 -2.7643661556411643 -0.08999848333808824 ALESPERPFLAILGGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 208.2 4.9195e-12 6819000000.0 3620440.0 3787300.0 3220080.0 3211560.0 3274500.0 4504600.0 4083100.0 3417590.0 4733500.0 4436600.0 False True 3600947.9533086945 3913357.9910288053 3673439.2745628944 3618143.166711331 3691488.16551792 4193207.604687821 3885584.8540432774 3672627.9199703797 3566992.3506503785 4153452.38963564 0.866977062815107 0.9421940169084502 0.8844303316752705 0.8711170436767016 0.8887758469868374 1.0095716072613194 0.9355072574659122 0.8842349870519545 0.8588017909032277 1.0 21.985879586461085 ALETIPIT(ph)PVER ddPTM_BT-474_Trastuzumab_2h_R1 1 ALETIPITPVER 12 0 H3BLT5;H0Y781;Q2LD37-4;Q2LD37;Q2LD37-7 H3BLT5 KIAA1109 Uncharacterized protein KIAA1109 1 ALETIPIT(1)PVER 115.24 0.010855 15210000.0 42176.0 52724.0 58966.0 59866.0 59525.0 74538.0 46479.0 44073.0 50987.0 58167.0 True False 41948.9291021941 54478.88646766897 67267.90025834 67445.02946180062 67105.1559176833 69385.36350357863 44230.63320297753 47361.951058159306 38421.93704079662 54454.73226072585 0.7703449702285792 1.0004435648829835 1.2352994398405175 1.238552218728724 1.2323108228021031 1.2741842742218592 0.8122459034635232 0.8697490390989943 0.7055757221766291 1.0 15.732769807966774 2.224564564349776 24.999481270895636 0.8388004544342373 1.1345459963449402 0.4293056149676805 0.15685929054732617 227.53593665679074 406417.7253443718 0.06182844789361674 0.0458883153908912 167.7121646353759 -2.224564564349776 0.2957455419107029 ALETNTHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALETNTHVK 9 0 Q9NYL9;H0YKU1;H0YNJ8;G5EA42;Q9NZR1 Q9NYL9 TMOD3;TMOD2 Tropomodulin-3;Tropomodulin-2 0 98.943 0.0056723 320440000.0 97098.0 119500.0 106520.0 109670.0 112360.0 140690.0 132770.0 109440.0 156580.0 150840.0 False True 96575.235156602 123477.48526072463 121517.09011156224 123554.21075528159 126668.3799901032 130964.43144863678 126347.40786934599 117606.96852505958 117992.9570645053 141213.26205937896 0.6838963546921885 0.8744043120312837 0.8605217975947992 0.874947642689028 0.897000594298574 0.9274230305193811 0.8947276341241801 0.8328323190750091 0.8355656922286115 1.0 17.10751606027555 4.741797435321639 4.847724437301663 0.8823041810092802 0.6727175571542867 0.6359058400712349 0.04628469530222088 0.11492684357517077 7.910666639936525 0.010786635315506832 0.08142059045755902 55181.99980345559 -4.741797435321639 -0.2095866238549935 ALEVIKPAHILQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALEVIKPAHILQEK 14 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 148.7 4.6189e-06 1370350000.0 2454400.0 2254660.0 2011760.0 1816960.0 1986590.0 2492200.0 2365200.0 2400500.0 3202800.0 2547800.0 False True 2441185.783109473 2329704.995129248 2294998.321468612 2046986.9497028948 2239570.461058558 2319920.080007767 2250786.2400585753 2579637.4994920115 2413512.8553212294 2385197.222718681 1.0234733462950185 0.9767347424938797 0.9621838813197765 0.8582044831369167 0.9389456099172647 0.9726323919510058 0.943647853779193 1.08151958040254 1.011871400961248 1.0 21.18567713135137 1.7542286035434254 24.999999999998153 1.0374295067718455 0.9513910085730592 0.391865940454585 0.04393466153467923 5.213222624953273 8328.454225146312 0.02111346544836795 0.011708531198916393 56.784342767356286 -1.7542286035434254 -0.08603849819878628 ALFAGDIEEMEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ALFAGDIEEMEER 13 0 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-4;Q9BQ52-3 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 157.38 0.00011082 49410000.0 47929.0 57138.0 61060.0 56889.0 55039.0 54644.0 51123.0 55774.0 62606.0 61545.0 False True 47670.955589412486 59039.80378934962 69656.7172569658 64091.14156703945 62047.89040828852 50866.58889813995 48649.98518117476 59936.13909463338 47177.59017742002 57617.14540867454 0.8273744777059953 1.0246915804416248 1.2089581454078535 1.1123623204941044 1.076899766001717 0.8828377132769534 0.8443664613389588 1.0402483265963693 0.8188116548085216 1.0 15.814210564747576 2.7450276442449 24.596299548800655 0.9236646091011408 1.0609372791296636 0.26669731918634754 0.10910677321168545 588.1122319314386 2236791.3559284457 0.034831198855364 0.03613042163232531 555.9396434960565 -2.7450276442449 0.13727267002852284 ALFARPDLLLLDEPTNMLDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALFARPDLLLLDEPTNMLDVR 21 1 Q9NUQ8-2;Q9NUQ8 Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 0 ; 142.93 1.2930999999999998e-07 264160000.0 247970.0 272860.0 237680.0 253910.0 245070.0 279190.0 300030.0 305010.0 376280.0 262130.0 False True 246634.957072057 281941.9801526472 271143.2780484056 286054.9799660214 276278.211856307 259890.25244256802 285516.40267409664 327771.3950093972 283550.8358936777 245400.6389792165 1.0050298079824682 1.1489048330331586 1.1049004565606257 1.165665179829658 1.1258251527197758 1.0590447258964906 1.1634704940531049 1.3356582785310385 1.1554608703267975 1.0 17.904779479961455 2.0018852722549285 24.754672088302808 1.2131424050064175 1.1081633738019192 0.019792932756734438 0.0906118462185501 77.43129026079251 1016703.9525897141 0.032569951492418564 0.023885227546583173 100.43504355786682 -2.0018852722549285 -0.10497903120449825 ALFEEVPELLTEAEKK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALFEEVPELLTEAEKK 16 1 P31939-2;P31939;H7C1S2 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ;; 192.4 8.666200000000002e-10 282296000.0 373036.0 353285.0 327537.0 324378.0 320067.0 411413.0 437463.0 384178.0 699020.0 450405.0 False True 371027.6156241961 365043.87765970756 373651.3625973599 365444.22154077445 360825.6352642611 382972.9876720308 416301.24341905286 412847.3131763553 526755.8873881117 421659.7672888794 0.8799217862538089 0.8657308711400388 0.8861442129036967 0.8666803188040665 0.855726970548412 0.9082511953521423 0.9872918303202606 0.9791005573778476 1.2492438886805886 1.0 18.685719847721295 1.779102691173119 1.4745955737708722 1.108975601399833 0.8746569258918044 0.662349510859602 0.06571535755722963 0.21781979439801033 0.9045475239185017 0.04738823046525456 0.01904325155454167 60.13159049256616 -1.779102691173119 -0.23431867550802865 ALFPGDSEIDQLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALFPGDSEIDQLFR 14 0 G3V5T9;P24941;P24941-2;E7ESI2;Q00526;K7EJ83 G3V5T9 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 0 ; 155.48 1.357e-05 27194000.0 67068.0 73566.0 71946.0 71573.0 71095.0 84596.0 85824.0 72218.0 91672.0 88993.0 False True 66706.91333995524 76014.5998384139 82075.37143415757 80634.13446145503 80148.52683692049 78748.07763756394 81672.36524048162 77607.27387557352 69080.66394186577 83313.39054925952 0.8006745722407539 0.9123935460707223 0.9851402144728467 0.9678412309216924 0.9620125445444716 0.9452031314342403 0.9803029825342706 0.9315102093905033 0.8291663979396137 1.0 16.34626077101598 4.686289972646404 3.200974088357962 0.9492919813726722 0.7873296242199131 0.4984662674603132 0.04498162930678046 0.23741463812662164 3.939914041056686 0.01081701330773917 0.08874042359904477 48561.262903216324 -4.686289972646404 -0.16196235715275908 ALGALVDSCAPGLCPDWDSWDASKPVTNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALGALVDSCAPGLCPDWDSWDASKPVTNAR 30 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 ; 201.32 1.8985e-25 1124250000.0 600250.0 579230.0 463380.0 505570.0 444960.0 567150.0 583580.0 529120.0 751210.0 619460.0 False True 597018.3206940446 598509.3203980705 528619.8762288375 569575.1101627399 501623.01851545344 527944.2554274957 555350.0059079072 568605.6212169187 566084.3611982825 579925.5324536123 1.0294741088017185 1.0320451280457197 0.9115306132363147 0.9821521527995487 0.8649783298782034 0.9103656002069981 0.9576229616210752 0.9804804054948226 0.9761328472695984 1.0 19.145508131819575 4.253281217997884 24.977800622588685 0.9464973440022735 1.0307596901317324 0.41487725548922616 0.039328772822801276 226.81910563889028 384857.83151278057 0.009888510616422265 0.02683147109285696 17917.656976002094 -4.253281217997884 0.08426234612945893 ALGEYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ALGEYLER 8 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 121.31 0.0033468000000000005 238400000.0 253720.0 307950.0 265950.0 277150.0 286000.0 290090.0 304480.0 236960.0 363080.0 324010.0 False True 252353.99971094183 318199.9295902941 303393.4483211606 312237.1615831701 322420.40474518994 270036.76109840785 289751.139173446 254643.1584584989 273603.79902273987 303331.40440108255 0.8319415531972568 1.0490174277159627 1.0002045416965664 1.0293598257644034 1.0629311705518851 0.8902367416640758 0.9552296101537844 0.839488278377516 0.9019962821289843 1.0 18.21053534473081 2.7188370432431515 24.61858517417674 0.9051343173909411 0.999941411215361 0.2142839099879018 0.07177454839796299 843.5773460216074 1052935.2531054039 0.022516867493713795 0.02125681334762164 523.4040071425226 -2.7188370432431515 0.09480709382441987 ALGHQLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALGHQLGR 8 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 154.01 0.00043183 140090000.0 328130.0 394370.0 383040.0 382200.0 332930.0 344900.0 378410.0 309400.0 457080.0 401380.0 False True 326363.38453867007 407496.3670483008 436968.7025566357 430586.48081215064 375326.6620692875 321057.8748072701 360104.8626334201 332488.9991013654 344438.7585582075 375763.58476129366 0.8685338275820277 1.08444879592887 1.1628819829207853 1.1458973095694827 0.9988372404625538 0.8544145516687688 0.9583282607392068 0.8848356056443875 0.9166368762875586 1.0 18.519465736432014 2.993626367775485 6.970610030307732 0.9169785304829604 1.0739341861411407 0.3941187339259271 0.08303922253866466 0.12994631697013118 36.49969965679408 0.024982746232940337 0.028314657718022045 985.4313345665419 -2.993626367775485 0.15695565565818026 ALGNICYDSHEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALGNICYDSHEGR 13 0 P52306-4;P52306;P52306-5;D6RHH8 P52306-4 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 0 ; 155.66 1.3398e-06 264620000.0 420270.0 598460.0 550190.0 562490.0 516300.0 546300.0 544360.0 462220.0 545790.0 539430.0 False True 418007.31301638694 618379.3793232901 627651.9696627912 633701.176326601 582047.7446501461 508535.5668518746 518027.2271428574 496713.2035056015 411287.36771130614 505003.1155707426 0.8277321468481733 1.2245060678970512 1.2428675196457626 1.2548460728017625 1.1525626807120377 1.0069949098772186 1.025790160833751 0.9835844338192409 0.8144254065571038 1.0 18.945932762904402 2.3621519623155502 1.4366881729409298 0.9384384724438031 1.156029796235041 0.3281268076908098 0.12545778696960053 0.47261388212072913 1.9571811268683463 0.06805932161207973 0.045456805113277904 230.22472469871843 -2.3621519623155502 0.2175913237912379 ALGS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 5 ALGSPTK 7 0 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 NANS Sialic acid synthase 1 ALGS(0.999)PT(0.001)K;ALGS(0.981)PT(0.019)K;ALGS(0.999)PT(0.001)K;ALGS(0.925)PT(0.075)K;ALGS(0.983)PT(0.017)K 92.732 0.01621 5206190000.0 9436160.0 8537240.0 7364480.0 7164510.0 7621210.0 8003630.0 9314900.0 9279290.0 13248090.0 9539720.0 True False 9385356.763015924 8821396.87252943 8401334.770792333 8071536.2314062435 8591725.919049272 7450357.896618471 8864302.700626422 9971757.739079872 9983275.73481097 8930886.90223479 1.0508874276156617 0.9877402960194286 0.9407055382920652 0.9037776784953451 0.9620238183622447 0.8342237426334618 0.9925445028766732 1.1165473091574614 1.11783699022242 1.0 23.090372021929404 1.910627368382755 5.038722317195865 1.0861847793958606 0.9444843546036026 0.4808773134003662 0.06074669601616113 0.17862067154368244 7.304281381794566 0.02796352881579763 0.016601431731045065 81.40055545075604 -1.910627368382755 -0.14170042479225797 ALGS(ph)PTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALGSPTLK 8 0 Q8TC76 Q8TC76 FAM110B Protein FAM110B 1 ALGS(0.993)PT(0.007)LK;ALGS(0.983)PT(0.017)LK 123.75 0.0013995999999999998 1290980000.0 2390370.0 2160710.0 1975190.0 1760400.0 1907140.0 2467150.0 2377360.0 2334460.0 3490200.0 2598060.0 True False 2377500.5135150757 2232627.926173221 2253279.5833407515 1983266.4595021238 2150002.9744956004 2296601.7275464064 2262358.0144028654 2508669.259347686 2630086.976283924 2432249.5864889277 0.977490355727479 0.9179271480095632 0.9264179119847119 0.8154041717260878 0.8839565587507143 0.9442294657192909 0.9301504364396628 1.0314193384113486 1.0813392634102919 1.0 21.213859848563924 1.7856315258295197 2.4236550309481966 1.0477286617053623 0.9068351280839902 0.6276200771227087 0.043842230119372105 0.17463832495804196 2.010383010723573 0.02808651825456421 0.012890529322348233 61.04238951733168 -1.7856315258295197 -0.14089353362137202 ALGSNDPMQSILNSLEQQHEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALGSNDPMQSILNSLEQQHEEEKR 24 1 Q9NQT8;E7ERX9 Q9NQT8 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein 0 ;; 285.4 8.8716e-53 308051000.0 381496.0 395340.0 361003.0 341453.0 357356.0 410947.0 440220.0 362678.0 471700.0 428110.0 False True 379442.06792419055 408498.6529119234 411829.0845056736 384680.9147900355 402863.1683850421 382539.2011551848 418924.8767962903 389742.8740015679 355455.85545617033 400787.6532765885 0.9467409108591799 1.0192396137263577 1.027549329773054 0.9598122887397494 1.00517859043682 0.9544685272307774 1.0452539477486975 0.9724423165615872 0.8868932277483755 1.0 18.61247853977881 1.4627371071151625 11.693724919828885 0.938839776439106 0.9947548721082408 0.20202820470706528 0.039902674969453586 0.1695546737417387 107.26159952253472 0.01999659192029194 0.009177514904008794 29.02265284979467 -1.4627371071151625 0.05591509566913477 ALGVISNFQSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALGVISNFQSSPK 13 0 Q6N039;E9PC87;O94876-2;O94876 Q6N039 DKFZp686H13261;TMCC1 Transmembrane and coiled-coil domains protein 1 1 ALGVISNFQS(0.021)S(0.979)PK 150.12 4.625e-05 293910000.0 579430.0 568290.0 561440.0 390930.0 544640.0 832470.0 587500.0 530310.0 767490.0 566590.0 True False 576310.4132607244 587205.1891114401 640485.8718760371 440421.69791704434 613996.675665806 774923.3083235949 559080.380532053 569884.4250596164 578352.3733391061 530429.7411178965 1.0864971712297522 1.1070366979684956 1.2074848414913424 0.8303110926413034 1.1575457182543907 1.460934876484152 1.0540140139083725 1.074382488166233 1.0903468046874807 1.0 19.016802143854832 1.2326192709252528 1.4461739979401855 1.015581805578353 1.1294447734531943 0.06102472709129236 0.14711581542197633 1.2463995626414748 4.95678092884624 0.14090233991496423 0.04323714606550411 17.085168681079054 -1.2326192709252528 0.11386296787484129 ALHELNPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALHELNPR 8 0 Q5T6V5 Q5T6V5 C9orf64 UPF0553 protein C9orf64 0 127.56 0.0026642 0.0 66976.0 92411.0 93542.0 90102.0 70722.0 69348.0 86860.0 62293.0 104770.0 82201.0 False True 66615.40865773312 95486.84427137095 106711.90051836064 101508.90396163393 79728.02749786487 64554.135987632755 82658.24996257719 66941.61997744458 78950.83734607381 76954.86180418325 0.8656426260271955 1.2408162659604738 1.3866817250597647 1.3190707069285637 1.0360362637092133 0.8388571491674566 1.074113422137078 0.8698816216158243 1.0259369648011252 1.0 16.231724854630734 3.0671333606423232 5.79171081912728 0.9543429185945916 1.21715884914989 0.3856115232452122 0.14337125574677864 0.19526499646052076 12.170809258414309 0.042265995577173816 0.05060488117550686 1167.1679692397274 -3.0671333606423232 0.2628159305552983 ALHHGIDLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALHHGIDLEK 10 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ; 133.57 0.00011193 1090720000.0 2499760.0 2563550.0 2280420.0 2339570.0 2153280.0 2988280.0 2762330.0 1535830.0 3620990.0 2663620.0 False True 2486301.5699094473 2648876.212051301 2601483.3142340328 2635759.3221184867 2427487.444509518 2781707.2372544724 2628705.544774652 1650441.4333867184 2728645.533280131 2493625.49116019 0.9970629425803089 1.0622590366682843 1.0432534169450043 1.0569988682992517 0.9734771532914107 1.1155272702799683 1.0541701446722114 0.661864197024562 1.0942483315770866 1.0 21.249813377468115 ALHQGDSLECTAMTVQILLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALHQGDSLECTAMTVQILLK 20 0 O14579;O14579-3 O14579 COPE Coatomer subunit epsilon 0 99.508 0.00064746 248340000.0 149240.0 140900.0 145580.0 145020.0 139260.0 178910.0 151880.0 151620.0 180350.0 178900.0 False True 148436.50842212292 145589.77132415152 166076.3985959563 163379.51713076443 156993.93554131186 166542.37280883937 144532.98416205653 162934.65431075956 135905.15906618696 167482.44883600427 0.8862809772232864 0.8692837508407244 0.991604790532859 0.9755023183995992 0.9373754481882304 0.9943870176624572 0.8629739125893756 0.9728461426444879 0.8114591111529709 1.0 17.353650392073156 4.264310734312193 24.992643378042686 0.9424095824062296 0.8777822905860181 0.16744079616576413 0.05838479735476527 380.9118777163528 369700.0362167171 0.013310398856475296 0.03642404229763352 18378.528423999123 -4.264310734312193 -0.06462729182021154 ALHSVLQAVPLNELR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALHSVLQAVPLNELR 15 0 Q16401-2;Q16401;F2Z3J2 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ; 161.84 1.6291e-06 2223600000.0 877940.0 1083020.0 1135250.0 1089590.0 902810.0 955960.0 1048770.0 863040.0 1343250.0 1003300.0 False True 873213.2685883032 1119067.6660005855 1295083.3322301088 1227531.9822818197 1017777.5021258905 889876.735287787 998036.9884095334 927444.4272283212 1012224.0361278382 939268.5350316556 0.9296737152585165 1.191424629126824 1.3788211612842556 1.3069020588882485 1.0835852199515967 0.9474146126462079 1.062568319054675 0.9874113660126644 1.077672676529853 1.0 19.841178154970518 3.04463348433628 6.507722522547439 1.0157795392806348 1.21271006823112 0.37434953034398055 0.11350713285187354 0.20465962152848877 21.428001102858385 0.03444633275293658 0.04105171410113315 1108.2391403536544 -3.04463348433628 0.19693052895048524 ALHVNNDR ddPTM_BT-474_Trastuzumab_2h_R1 6 ALHVNNDR 8 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;;;; 163.99 0.00033272 1938980000.0 1489960.0 1893350.0 1765750.0 1887330.0 1823290.0 1712430.0 1721280.0 1487030.0 1755350.0 1767630.0 False True 1481938.2209101198 1956369.0101957554 2014352.2518258628 2126265.7844876978 2055475.1740134873 1594053.7447266264 1638015.1104718533 1597999.7295853398 1322767.512984924 1654818.3400558203 0.8955292463462371 1.1822258448802079 1.217264882233487 1.284893775359037 1.242115297044721 0.963280201905942 0.9898458766275214 0.9656647445250311 0.7993430341969164 1.0 20.658241421229683 2.69995984350637 8.931289843364318 0.9471029978814867 1.1749775427024125 0.49522985897379934 0.1111666280938301 0.35451582497653933 78.7660987845825 0.036831944739774046 0.03488314452263596 501.1408941217918 -2.69995984350637 0.22787454482092584 ALIEHEMK ddPTM_BT-474_Trastuzumab_2h_R1 4 ALIEHEMK 8 0 O95372;Q5QPQ1;Q5QPQ3;Q5QPQ2;Q5QPQ0 O95372 LYPLA2 Acyl-protein thioesterase 2 0 ;;; 116.73 0.002216 1608160000.0 2678560.0 2983140.0 2563470.0 2554630.0 2637340.0 3167440.0 3059980.0 2539580.0 3692830.0 2946620.0 False True 2664138.9305759924 3082432.0115537876 2924384.2939193244 2878045.8960678857 2973189.616261115 2948482.3281517536 2911957.077141233 2729096.3553259415 2782781.5278868144 2758564.188871697 0.9657701427878225 1.1174044903463198 1.06011101924565 1.0433130059754234 1.0778033109598235 1.0688467355757767 1.055606060895134 0.9893176915495998 1.0087789651996544 1.0 21.395486120173814 1.7693345164189844 6.79654482862939 0.9996016491720122 1.0591349798663585 0.3342939307349373 0.036073984624653346 0.18047967067055554 22.01337916221568 0.016021500021975135 0.008812563013015279 58.79420420040915 -1.7693345164189844 0.0595333306943463 ALIEVLQPLIAEHQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALIEVLQPLIAEHQAR 16 0 P23381;P23381-2 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS 0 ; 229.16 3.4433e-15 2405600000.0 964100.0 1416040.0 1239200.0 1319250.0 1398150.0 1215010.0 1197320.0 1237370.0 1571290.0 1173090.0 False True 958909.3927215792 1463172.035385745 1413668.5886805118 1486266.9147342497 1576196.1150156904 1131019.218525894 1139401.0573934268 1329708.8326375477 1184066.6337072859 1098222.3918671212 0.8731468232871379 1.3323094176746495 1.2872334411949942 1.353338746087122 1.4352248931438665 1.0298635566909302 1.0374957438777919 1.210782845518993 1.0781665375573142 1.0 20.066738801404945 2.7143213183894384 24.910570464909334 1.0917848167357924 1.2675912264495273 0.26886814259915237 0.15005543962367535 1089.270919669394 1119435.0686247735 0.048798323889294865 0.04602898421208713 517.9899317629191 -2.7143213183894384 0.17580640971373485 ALIFVSHGAGEHSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALIFVSHGAGEHSGR 15 0 A0A0C4DFN3;Q99685-2;Q99685;A0A3B3ITT3;C9JAM4 A0A0C4DFN3 MGLL Monoglyceride lipase 0 140.33 2.8676e-06 132700000.0 57467.0 63297.0 65464.0 82553.0 57872.0 61663.0 72709.0 43093.0 70288.0 53447.0 False True 57157.6040571839 65403.802381155525 74680.76217671159 93004.20133565029 65241.65616578196 57400.3819490887 69191.78789464683 46308.81848182016 52966.46421094619 50035.966701721154 1.1423303640342732 1.3071357803686792 1.4925416075581228 1.8587469667584358 1.303895187130216 1.1471824316150212 1.3828410332735062 0.9255106183494046 1.0585678203579953 1.0 15.610677881004808 2.081782153584455 1.1932633221438853 0.9826723695550726 1.4305951485222 0.4224807990462013 0.19793790676666967 0.4678648071245244 1.2444415995230287 0.15042419547781605 0.07454550549901431 120.72081356439942 -2.081782153584455 0.4479227789671273 ALINLS(ph)PPSMVVQKPDYLNDFTHEIPNIQTDSYESMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAK 38 1 Q9H5V7 Q9H5V7 IKZF5 Zinc finger protein Pegasus 1 ALINLS(0.877)PPS(0.123)MVVQKPDYLNDFTHEIPNIQTDSYESMAK 207.62 6.3707e-31 125140000.0 289860.0 280740.0 277090.0 249960.0 283120.0 347880.0 329120.0 331450.0 445610.0 313820.0 True False 288299.42596647365 290084.2611890864 316101.8634905443 281604.9103710236 319173.65381628746 323831.87442143576 313199.20823950553 356184.4820689974 335795.3863680817 293791.7389251809 0.9813054207078777 0.9873805922873867 1.0759385701142707 0.958518818130346 1.086394243023867 1.1022497623866307 1.0660585943816039 1.212370651986596 1.1429708255125501 1.0 18.16443430403 2.883874781577667 1.420395344340891 1.130202680973851 1.00329436052552 0.35323604524660546 0.061363801031407636 0.37647095381612283 1.5536405843653878 0.0241670164336739 0.026162579262634683 765.3758972680665 -2.883874781577667 -0.126908320448331 ALIQTCLNSPDS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 5 ALIQTCLNSPDSPPR 15 0 P11831 P11831 SRF Serum response factor 1 ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR 316.68 2.4559e-56 2813760000.0 722508.0 807438.0 707133.0 746970.0 732028.0 783413.0 715841.0 697405.0 780330.0 766560.0 True False 718618.097206186 834313.0857234219 806691.1798897799 841536.3254114403 825247.426730112 729257.5032658391 681213.036051823 749448.9024508343 588028.1273862912 717637.4845149656 1.001366445750647 1.1625829248416624 1.124092870420507 1.1726482291824751 1.1499502806599875 1.0161920454290752 0.9492439438447657 1.0443279770389493 0.8193943879390939 1.0 19.452895723266273 2.5819464679757935 3.6941831036606603 0.9669691397833455 1.1269582661838657 0.5623015989015008 0.0700802314391578 0.18448876478282022 4.579166843917737 0.023296661430540894 0.021498625354556208 381.8971945111209 -2.5819464679757935 0.1599891264005202 ALIQTCLNSPDS(ph)PPRSDPTTDQR ddPTM_BT-474_Trastuzumab_2h_R1 6 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 ALIQTCLNSPDS(0.999)PPRS(0.001)DPTTDQR;ALIQTCLNS(0.002)PDS(0.997)PPRS(0.001)DPTTDQR;ALIQTCLNSPDS(0.997)PPRS(0.003)DPTTDQR;ALIQTCLNS(0.005)PDS(0.995)PPRSDPTTDQR;ALIQTCLNSPDS(1)PPRSDPTTDQR;ALIQTCLNSPDS(1)PPRSDPTTDQR 267.24 1.8834999999999996e-44 8535140000.0 1218900.0 1466300.0 1377440.0 1568930.0 1531170.0 1445310.0 1462960.0 1290950.0 1672120.0 1592880.0 True False 1212337.5778325205 1515104.9091029335 1571371.57907689 1767556.3771339816 1726155.423544382 1345399.1215937813 1392191.0357500804 1387287.2443112726 1260048.4312600638 1491221.0346668223 0.8129831524964964 1.0160163207739672 1.053748265714328 1.1853081039249824 1.1575449805333857 0.9022130792933581 0.9335913344738543 0.9303028941120247 0.8449776404485815 1.0 20.508062684747863 2.7103961532149126 24.88057819815782 0.919966599729654 1.05177085420892 0.27289665596968804 0.09997929000212787 928.5504606224736 820283.5442594687 0.03406972106407488 0.032127000252738416 513.329417519171 -2.7103961532149126 0.13180425447926591 ALIQYFSPYVSADMHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALIQYFSPYVSADMHR 16 0 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;Q13098-6;J3QQX0 Q13098-7 GPS1 COP9 signalosome complex subunit 1 0 130.01 5.2298e-05 205000000.0 150990.0 225120.0 214730.0 194730.0 183480.0 174420.0 180940.0 173780.0 212430.0 183520.0 False True 150177.08661656606 232612.9831120863 244962.11753338116 219382.79803388315 206845.0904288375 162362.7559405162 172187.2409420762 186748.34603695985 160079.47291616336 171807.59648062327 0.8741003872521043 1.3539155885829575 1.42579328592731 1.2769097672501664 1.2039344864018617 0.9450266418157344 1.002209707074831 1.0869621009919759 0.93173687424361 1.0 17.39043430114971 2.854888047938637 4.699881730792349 1.0071894110326234 1.25331155476316 0.40019598363773257 0.14170789327313715 0.23403328736315168 8.063873802167084 0.044284292986943904 0.04720270321239196 715.9588271668927 -2.854888047938637 0.24612214373053654 ALIVLAHSER ddPTM_BT-474_Trastuzumab_2h_R1 1 ALIVLAHSER 10 0 P15559-2;P15559;B4DLR8;P15559-3;H3BRK3 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 103.26 0.0028386 582840000.0 140210.0 157340.0 204940.0 173690.0 143980.0 138070.0 165000.0 113040.0 183280.0 137010.0 False True 139455.1249387955 162576.96678596162 233793.77062958665 195679.13619116295 162314.99956367977 128525.54588182016 157018.31963878925 121475.61880548928 138113.09982617552 128265.90449983747 1.087234565433343 1.2674994763411005 1.8227273377227298 1.5255740561312683 1.2654571002061226 1.002024243176666 1.2241625726733032 0.9470608676496972 1.0767717295156214 1.0 16.968778200233395 2.9634958776467775 3.7311428903827397 1.0547119177991728 1.441138542867634 0.4678044389790156 0.188762039614834 0.21378015128031394 6.258958190741908 0.06214157721424265 0.06957112041408776 919.3817479275025 -2.9634958776467775 0.38642662506846115 ALKDEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 ALKDEEK 7 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;;;;; 107.47 0.0068139 11526760000.0 13439860.0 10084390.0 8902060.0 8021120.0 8388080.0 11096860.0 13610160.0 11877420.0 20570200.0 13012300.0 False True 13367501.287068816 10420042.825007506 10155392.66990738 9036592.969576037 9456252.267954653 10329760.187398659 12951784.564939784 12763773.392716674 15500949.836558254 12181843.8736095 1.0973298809080865 0.8553748458048519 0.8336498788913078 0.7418083061426135 0.7762578773842674 0.8479636001391253 1.063203953302855 1.0477702329093097 1.2724633476988816 1.0 23.538229183825166 2.1890804007014104 3.824376207504737 1.1000213343930767 0.847092119570906 0.5260311759542202 0.11033907350432559 0.1794715206238779 5.427150615183399 0.044341779365440676 0.03245985182920826 154.5540538134834 -2.1890804007014104 -0.2529292148221707 ALKDFVASIDATYAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALKDFVASIDATYAK 15 1 P25205;P25205-2;J3KQ69;A0A499FHX9 P25205 MCM3 DNA replication licensing factor MCM3 0 206.95 3.3171e-09 151360000.0 288340.0 306750.0 288370.0 279860.0 284630.0 407620.0 382860.0 339200.0 532090.0 402840.0 False True 286787.6094775858 316959.9883157093 328969.98944302695 315290.2473053075 320875.9433658166 379442.18883426895 364339.5991327695 364512.8264226996 400963.5491407121 377130.40631132445 0.7604467968590157 0.8404519577614117 0.8722977090620991 0.836024468005989 0.8508355147076916 1.006129928757418 0.9660838612731851 0.9665431912212114 1.0631960256466648 1.0 18.52470394755259 2.781280201967863 4.974404713111103 0.9931427801368056 0.8333404489727083 0.8384870799377305 0.03691354368479141 0.08467714835960125 5.100463060134574 0.011788421172012658 0.012293410279729782 604.3384160421481 -2.781280201967863 -0.15980233116409726 ALKDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALKDYK 6 1 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 0 70.268 0.083281 457150000.0 252080.0 251100.0 213320.0 210500.0 209290.0 245460.0 268220.0 234710.0 380600.0 265930.0 False True 250722.82928872108 259457.7117068446 243353.60178932073 237149.2784169486 235941.84094098164 228491.9279506888 255245.17390009787 252225.2520332303 286806.2297787119 248958.1197258728 1.007088379221338 1.0421741294982982 0.977488109475107 0.9525669565550748 0.9477169943313223 0.9177926319586633 1.0252534610284965 1.013123220527834 1.1520260118228463 1.0 17.925543543856513 1.599566933151884 2.572505256849564 1.0750828966366865 0.9775362283605027 0.34936094418163555 0.04964160147143174 0.25294153402783337 3.796131788348317 0.03502341494036325 0.013472672879687854 39.771038658898696 -1.599566933151884 -0.09754666827618386 ALKEDDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALKEDDPK 8 1 P61201;P61201-2;H0YKU5 P61201 COPS2 COP9 signalosome complex subunit 2 0 93.111 0.010306 534470000.0 1351800.0 1026600.0 917810.0 825020.0 755330.0 1251100.0 1207900.0 1148500.0 1980000.0 1184600.0 False True 1344522.0589990981 1060769.7604071943 1047029.6702524681 929467.4474087929 851516.7983083382 1164614.4017726162 1149469.2623739028 1234206.9019648312 1492055.5306406992 1108997.8138129169 1.2123757524610532 0.9565120392438767 0.9441223934000446 0.8381147697786084 0.7678254976722482 1.0501503134334236 1.0364937135645367 1.112902917023276 1.3454089016738158 1.0 20.080825090816248 1.9532411452403078 1.7610881242594998 1.1726760772251517 0.9436916211365136 0.2870576808632542 0.13593011353329212 0.4298629188508564 2.478645492855376 0.08777189535941375 0.04213239422986678 89.79272368809104 -1.9532411452403078 -0.22898445608863804 ALKEPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALKEPPR 7 1 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 ;;; 101.64 0.008124600000000001 5342740000.0 8992100.0 10123900.0 8869700.0 8621300.0 9111600.0 10067300.0 10134800.0 9751600.0 11684800.0 10190700.0 False True 8943687.532716235 10460867.891473208 10118476.663185546 9712755.696038201 10271908.251315648 9371371.24687511 9644541.00530425 10479313.909621466 8805237.608298196 9540320.80130279 0.9374619280616767 1.0964901610064004 1.0606013019817746 1.0180743287701461 1.076683736873183 0.9822909985998992 1.0109241823385255 1.0984236408686017 0.9229498453653451 1.0 23.185606348203518 2.73758751321734 24.998070543254368 1.0170117451894414 1.0412833406679616 0.05717321473789794 0.0574449610764025 338.1803299168419 8687414.710908376 0.01791326342406912 0.017766632157885192 546.4966614877642 -2.73758751321734 0.024271595478520203 ALKEPPRDR ddPTM_BT-474_Trastuzumab_2h_R1 8 ALKEPPRDR 9 2 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 ;;;;;;; 111.61 0.0011795999999999998 7179840000.0 8256040.0 11211040.0 10105630.0 11307790.0 10948420.0 11174540.0 11988560.0 10616550.0 14838730.0 12130810.0 False True 8211590.397972271 11584192.689183196 11528414.864289397 12739355.054586159 12342636.390630536 10402070.351837717 11408627.552053357 11408810.870748557 11181923.82029498 11356611.320091052 0.7230669577856464 1.0200395490060956 1.0151280641166618 1.1217567191058908 1.086823881063456 0.9159484337933931 1.0045802599469336 1.0045964019711724 0.9846179908009152 1.0 23.437029079950932 4.738778264777063 24.99999996886555 1.0181909576014962 0.7230668703359301 0.7371613807714789 0.05266003779489197 9.302717924537358 1067896.8396034918 0.013265479667672851 0.07719002331098299 54799.710576961785 -4.738778264777063 -0.29512408726556616 ALKPMHSLIPLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALKPMHSLIPLGK 13 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9;H0YAC6;H0Y9N9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 72.937 0.022948 288190000.0 591740.0 599530.0 544330.0 510380.0 518170.0 620940.0 628930.0 555080.0 863440.0 632880.0 False True 588554.1375884948 619484.9936264622 620966.9325988245 574994.0556695603 584155.8780657867 578015.8793355349 598506.2531540837 596502.888239128 650656.7815032346 592489.0565641725 0.9933586638739015 1.0455636045310919 1.0480648135508095 0.9704720269500585 0.9859353039417982 0.9755722454815163 1.010155793635759 1.0067745245764228 1.0981751887138222 1.0 19.176428981719603 1.4230407551730517 24.965277882861134 1.0502170160550315 1.0048379057618868 0.2259538347507679 0.033020806944959895 112.04084451560286 51724.132493420664 0.020800966882246377 0.008070323203832618 26.487486914914438 -1.4230407551730517 -0.045379110293144675 ALLDSLQLGPDSLTVHLIHEVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLDSLQLGPDSLTVHLIHEVTK 23 0 Q14697;Q14697-2 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 255.41 8.7396e-44 2477500000.0 1611580.0 2084270.0 1932340.0 1785650.0 1873000.0 2075240.0 2247600.0 850300.0 2589400.0 1661660.0 False True 1602903.4323433696 2153643.666982179 2204396.675799629 2011713.1069131822 2111515.4478592356 1931783.5433895031 2138875.0013342 913753.7037359127 1951277.0661823368 1555611.4361813022 1.0304009054331456 1.3844354810536235 1.4170612432696932 1.2931976842825952 1.3573540273286757 1.2418162392349237 1.3749416798996328 0.587391994223818 1.2543473394437819 1.0 20.569050315316805 1.7648894784097169 24.9999999999999 0.9093876245740377 1.3073651397056754 0.4320406930999705 0.1836121438315254 13.093421712275765 12440.569150954689 0.07900041574641115 0.04381322281736119 58.195509986802634 -1.7648894784097169 0.3979775151316377 ALLDSQFSYQHAIEESVVLIYDPIK ddPTM_BT-474_Trastuzumab_2h_R1 5 ALLDSQFSYQHAIEESVVLIYDPIK 25 0 A0A087WZK9;B3KS98;O15372;E5RJT0;E5RGU4 A0A087WZK9 EIF3H Eukaryotic translation initiation factor 3 subunit H 0 ;;;; 227.99 4.846e-34 807560000.0 729341.0 813048.0 765210.0 742992.0 790832.0 933868.0 893615.0 834328.0 1076994.0 926395.0 False True 725414.3090934028 840109.8111821056 872944.9166754468 837054.7110193133 891539.7675714969 869311.9032488135 850387.4285091918 896589.7919917387 811583.2596802273 867271.6779733388 0.8364326052806986 0.9686812477784289 1.0065414781160218 0.965158591337103 1.0279821078152447 1.0023524638556656 0.9805317642752933 1.033804994170813 0.9357889578231754 1.0 19.726124471422974 4.739059141807162 2.873767207405818 0.9968636434736996 0.8079054011159864 0.7462112866354835 0.02737756792914124 0.18320441231723825 2.1356025481638574 0.006298781959197833 0.08075079595984423 54835.16338375889 -4.739059141807162 -0.1889582423577132 ALLELQLEPEELYQTFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALLELQLEPEELYQTFQR 18 0 P13639 P13639 EEF2 Elongation factor 2 0 187.97 9.3556e-14 325930000.0 186550.0 229670.0 194010.0 212170.0 202770.0 197120.0 216050.0 201450.0 236060.0 236910.0 False True 185545.63552765356 237314.42711155314 221324.92163484983 239030.70024571978 228591.5575880498 183493.5583705684 205598.83610885125 216483.2219423729 177886.17604194095 221790.20097114446 0.8365817548079754 1.0699950947897308 0.9979021645940293 1.077733367836293 1.0306657218719515 0.8273294201777718 0.9269969331765033 0.9760720761984341 0.8020470483503663 1.0 17.7588361008804 2.766554890658284 24.888769153984597 0.9126673193830553 1.0102369494560668 0.2434479563068086 0.083799950749533 977.0303559584248 868643.0773105986 0.02474831370229099 0.026244111300467693 584.1910385727022 -2.766554890658284 0.09756963007301145 ALLEPELRPEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLEPELRPEDR 12 1 P0DPD7;P0DPD8 P0DPD7 0 ; 103.88 0.0020048 280140000.0 525590.0 764110.0 692990.0 735870.0 679480.0 626350.0 653130.0 588390.0 715260.0 732930.0 False True 522760.28183853836 789542.9394357505 790556.9684229408 829031.0665495496 766007.7504065103 583051.8987693056 621535.6067011065 632298.6495838801 538993.7569929633 686153.7799070568 0.7618704394652596 1.1506792829191996 1.152157127998371 1.2082292495158247 1.116379116224165 0.8497393963905336 0.9058255232308081 0.9215115737896661 0.7855290938803439 1.0 19.388172422039318 2.7418279859689605 24.922177232775827 0.8916852185208555 1.0932784123147543 0.35157831090867975 0.12497614938013635 290.74396877381184 2217683.376233119 0.03860462220183298 0.039432756176393725 551.8588174343392 -2.7418279859689605 0.20159319379389884 ALLETAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLETASPR 9 0 H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2;Q96BT3 H3BMP6 CENPT Centromere protein T 1 ALLETAS(1)PR;ALLETAS(1)PR 158.94 0.00036185 211240000.0 257830.0 327590.0 257000.0 260340.0 239460.0 306750.0 308160.0 247750.0 361540.0 317960.0 True False 256441.87192760588 338493.63511766307 293183.3661159547 293299.0173067383 269953.81160938164 285545.0945118297 293253.12351448066 266238.3630490092 272443.31138779694 297667.52058074815 0.8615043771899897 1.1371534067850713 0.9849356945089445 0.9853242192312855 0.9068971014462808 0.9592752812088211 0.985170041200145 0.8944152271956953 0.9152604585688795 1.0 18.183342287704406 3.4301050333984175 4.540722286032191 0.9389159939191871 1.0058577420676473 0.09672954900119435 0.06959094677569949 0.3571372935839821 16.05815545912768 0.01846499163915241 0.02590466433575325 2692.185825865582 -3.4301050333984175 0.06694174814846021 ALLFGHTAS(ph)IT(ph)CLS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 ALLFGHTASITCLSK 15 0 Q9Y4E6-2;Q9Y4E6;K7EMB8 Q9Y4E6-2 WDR7 WD repeat-containing protein 7 3 ALLFGHT(0.425)AS(0.576)IT(0.999)CLS(1)K 57.804 0.040113 0.0 57700.0 85212.0 90164.0 89441.0 95058.0 87820.0 76234.0 71155.0 55660.0 89264.0 True False 57389.34961107266 88048.2299082582 102858.30748046278 100764.22142940755 107163.07284709181 81749.2101060437 72546.27017783916 76464.94741776884 41943.33880578855 83567.09509724472 0.6867457764840368 1.0536231970944894 1.2308469902031345 1.205788250891706 1.282359674252038 0.9782464020188137 0.8681200428639895 0.9150126294181782 0.5019121312878023 1.0 16.3506473662946 2.288725912323485 2.404252083079179 0.8135416404805859 1.10482596139837 0.2961657952266482 0.19528900856416417 0.371122689768286 4.40141756559938 0.08531522488129895 0.06189534593374739 194.41327323731934 -2.288725912323485 0.2912843209177841 ALLFIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLFIPR 7 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 143.22 0.0056673 1659080000.0 429790.0 621800.0 595470.0 529440.0 475620.0 486650.0 582150.0 459990.0 674470.0 487420.0 False True 427476.05839415826 642496.2371139632 679307.0000819749 596467.0497152942 536187.3877793964 453009.0309508784 553989.1804710384 494316.789581892 508255.90593496524 456312.4382987429 0.9368056237693311 1.408018241863764 1.4886883263901733 1.3071461561273363 1.1750444274069078 0.9927606458413 1.2140567163508866 1.0832858105399004 1.113833118005465 1.0 18.79966245416239 3.1020195137523654 3.8713952789030897 1.0956161840758478 1.3081024497951734 0.29265765784726505 0.1467167201829709 0.2779362874666452 7.875469420199241 0.043495681404172704 0.052789118741942316 1264.7931759766586 -3.1020195137523654 0.2124862657193256 ALLFVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLFVPR 7 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 181.07 0.0015755 2983000000.0 822320.0 1031600.0 1090480.0 921250.0 824810.0 929140.0 987050.0 760440.0 1199110.0 826130.0 False True 817892.7204883416 1065936.1823846302 1244010.1053779253 1037880.1555421107 929844.6644681129 864910.738760297 939302.6206028301 817187.8942360776 903605.4077507928 773405.6761145227 1.0575209695865115 1.3782368235771658 1.6084832886508547 1.3419608720177347 1.2022728733250534 1.118314444116162 1.2145018450365523 1.056609641581001 1.168345973733183 1.0 19.56086582700367 3.1200070205794765 2.9757669699369447 1.1205536031061782 1.369181614711006 0.395553938585513 0.13586502272886394 0.260503045441448 4.637303611250995 0.04230690488564556 0.05234877919366383 1318.2780489837662 -3.1200070205794765 0.24862801160482784 ALLLLCGEDD ddPTM_BT-474_Trastuzumab_2h_R1 5 ALLLLCGEDD 10 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ;;;; 197.99 7.094499999999998e-07 141826000.0 319739.0 363009.0 278651.0 295040.0 248535.0 285190.0 247073.0 242933.0 336170.0 296093.0 False True 318017.5607503426 375091.5351214259 317882.6387220896 332392.0337488669 280184.4590676424 265475.48656504875 235121.13507948283 261061.89404877846 253325.4079472142 277196.0912420288 1.1472656750872843 1.353163146856647 1.1467789365201981 1.1991223695093332 1.01078069972857 0.9577172801230216 0.8482123035212319 0.9417950046807728 0.9138852096079076 1.0 18.080547388529904 3.1547276028963687 1.7452894159492616 0.9198794679956748 1.2320970601398729 0.8051072168339551 0.06494890687363022 0.13077677110590283 0.8219253655930812 0.020350223804364163 0.027027389596356498 1427.9980122060886 -3.1547276028963687 0.3122175921441981 ALLLVGDVAQAADVAIEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALLLVGDVAQAADVAIEHR 19 0 Q9H269-2;Q9H269 Q9H269-2 VPS16 Vacuolar protein sorting-associated protein 16 homolog 0 ;;; 155.2 2.8236e-08 211611500.0 138452.0 179419.0 156941.0 183078.0 162491.0 164619.0 183146.0 151005.0 183872.0 179747.0 False True 137706.58981546335 185390.85295392436 179036.9286443739 206255.65602858996 183183.26569038702 153239.27600144374 174286.52829433762 162273.7598878529 138559.20935856906 168275.39257085114 0.8183406243279627 1.1017110114651307 1.0639519296856887 1.2257030150248944 1.0885921161245191 0.910645779280672 1.035722012777094 0.9643344603669768 0.8234074349297964 1.0 17.36046469678746 2.7465886031844593 24.217660906543824 0.9537082348724819 1.0714590085706328 0.20899743146424843 0.10813879818112793 630.2709435242485 1901308.7193276454 0.033536554565995885 0.0349669614306574 557.9414197145686 -2.7465886031844593 0.1177507736981509 ALLPHVLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLPHVLCK 9 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 114.93 0.001558 1204060000.0 1523360.0 1875760.0 1663640.0 1705050.0 1665410.0 1830930.0 1784070.0 1581000.0 2512200.0 1941040.0 False True 1515158.399021208 1938193.537679134 1897866.0513818946 1920909.155177284 1877490.0918415615 1704362.1186456194 1697767.7182907579 1698982.2481553315 1893101.9717553344 1817161.1653920477 0.8338051835343491 1.0666051941853896 1.044412618719174 1.0570934443026427 1.0331995464125483 0.9379256783081801 0.9342967209650163 0.9349650875841717 1.041790903200874 1.0 20.793254948280193 2.7413519844975847 24.93838860862376 0.9603218316073573 1.0151921791671197 0.05239452459468785 0.06965040001404636 503.66383345886305 4499795.571401744 0.021376255914325883 0.0217949611155338 551.2542928169556 -2.7413519844975847 0.05487034755976239 ALLQQQPEDDSKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALLQQQPEDDSKR 13 1 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 141.54 6.396800000000001e-05 229670000.0 91146.0 85271.0 75879.0 70797.0 73908.0 117000.0 102950.0 94333.0 135530.0 107400.0 False True 90655.2800632727 88109.19368759188 86562.10364790875 79759.89294102004 83319.74571296333 108912.06538837515 97969.91519280823 101372.607473268 102130.44750895641 100545.64005023385 0.9016331291737781 0.8763104361717865 0.8609234930988678 0.793270527704344 0.8286758696979376 1.0832102250675546 0.9743825305986539 1.0082247964468771 1.0157620704182775 1.0 16.61749099800666 2.7493146794517194 24.997955104853446 1.0126041479681385 0.8507191498292 0.8301012850791416 0.03711018671721374 291.6493523043613 677942.3000994335 0.011787420944682511 0.01238658182716341 561.4546453648239 -2.7493146794517194 -0.16188499813893842 ALLS(ph)PFSTPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALLSPFSTPVR 11 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 ALLS(1)PFSTPVR;ALLS(0.896)PFS(0.104)TPVR;ALLS(0.522)PFS(0.477)T(0.001)PVR;ALLS(0.928)PFS(0.07)T(0.001)PVR 162.68 2.6053000000000006e-05 154937000.0 224013.0 274170.0 249658.0 264845.0 258274.0 265782.0 271835.0 246504.0 313169.0 290305.0 True False 222806.93889818425 283295.5827107349 284807.67633376276 298374.34984483034 291163.66299006745 247409.1159235307 258685.30253945643 264899.3802019491 235992.69619960434 271777.48635738535 0.8198138185927395 1.0423806125655433 1.0479443317804582 1.097862644341593 1.0713310616435292 0.9103370527100599 0.9518275630796261 0.9746921415470317 0.8683305573342294 1.0 18.052066424781167 2.7321300939135 24.917444711767892 0.9433352024854196 1.0236769443975047 0.1824187946482695 0.0782650599338127 835.6311323935224 3237954.1043798435 0.0252612045915183 0.024315792162192283 539.6722583741556 -2.7321300939135 0.0803417419120851 ALLSTLHTVLWDGESR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALLSTLHTVLWDGESR 16 0 O14976-2;O14976;A0A087X1U9;H0Y8H5 O14976-2 GAK Cyclin-G-associated kinase 0 ; 166.09 6.7997e-09 442120000.0 272110.0 374400.0 332610.0 388010.0 348770.0 357100.0 347900.0 315250.0 352610.0 369600.0 False True 270644.9899942628 386861.67767042085 379438.5969020531 437132.0262164388 393183.79217825166 332414.51752298075 331070.74789293867 338775.5558070637 265713.990231928 346011.8115695204 0.7821842519381309 1.1180591665804822 1.0966059082807253 1.2633442316133494 1.1363305500894831 0.960702803800651 0.9568192091223459 0.979086679932593 0.7679332940301692 1.0 18.400461761437306 2.6309771825511907 4.964410704521856 0.9346129584664562 1.0922138608978662 0.2463153293935707 0.12758524188314166 0.32844289603885335 12.42508937926467 0.04261652202074107 0.04004660388369193 427.54042296498017 -2.6309771825511907 0.15760090243141 ALMDEVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALMDEVVK 8 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 121.62 0.0033163000000000003 100040000.0 145770.0 143900.0 126870.0 147390.0 139260.0 189210.0 154620.0 142330.0 187760.0 183780.0 False True 144985.19051656948 148689.62451061315 144732.19322619136 166049.55888776286 156993.93554131186 176130.35805243126 147140.43989423997 152951.38733709572 141489.06385509984 172051.00305802614 0.84268727260876 0.8642182949695789 0.8412167941699171 0.9651182262027311 0.9124848605989463 1.0237101494434724 0.8552140776802981 0.8889886406852923 0.8223669803737271 1.0 17.392476777454 3.762113337599061 24.366317820452323 0.9171206386214301 0.8508585239931424 0.24762475275121043 0.05873319087784426 931.2044698366253 963367.2991043982 0.015230735746612252 0.02743536423858292 5782.469325098949 -3.762113337599061 -0.06626211462828768 ALMDSLGPEWR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALMDSLGPEWR 11 0 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 0 ;;; 155.84 7.2913e-05 218416000.0 357439.0 486519.0 442145.0 481234.0 425657.0 390314.0 442951.0 386975.0 518231.0 427259.0 False True 355514.58813920664 502712.4908080541 504395.1728067662 542158.1750579661 479861.8958832987 363332.5118803265 421523.76789285673 415853.03951923386 390519.9139896267 399990.9648251666 0.8888065466543718 1.256809615756662 1.2610164157763761 1.3554260539233427 1.1996818380461247 0.9083517974940677 1.0538332236506942 1.0396560824842642 0.9763218380703182 1.0 18.60960788656395 2.769022941144674 16.797632261336197 1.0063553828316378 1.20880742025494 0.3988196779980373 0.11954959132401037 13.136137078854007 7242.641632806551 0.03675481064627119 0.03894378459999184 587.5203868504292 -2.769022941144674 0.2024520374233021 ALMGS(ph)PQLVAAVVR ddPTM_BT-474_Trastuzumab_2h_R1 6 ALMGSPQLVAAVVR 14 0 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 JUP Junction plakoglobin 1 ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR 187.56 9.8036e-07 1580170000.0 905148.0 1142722.0 1123753.0 1091777.0 1087404.0 1257890.0 1080670.0 963893.0 1372317.0 1067488.0 True False 900274.7837393978 1180756.8109799628 1281967.6545638235 1229995.8562575816 1225878.4538515348 1170935.025054558 1028393.8635396995 1035823.5902094799 1034127.8634556831 999360.0019175424 0.9008513268611683 1.1815129770196542 1.2827886368315942 1.2307835553729407 1.2266635161496913 1.171684901144535 1.0290524551377358 1.0364869398634848 1.0347901271528068 1.0 19.930644951676136 2.244011643426644 6.987993906359643 1.0286617833690335 1.177816090594976 0.3315563853001141 0.09688544950347186 0.15940084841416274 40.23481575170172 0.0359668676751682 0.02846590411055052 175.3927523974357 -2.244011643426644 0.14915430722594247 ALNEELHLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALNEELHLQR 10 0 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A0A0MRE9;A0A6I8PUA5;A0A087WX84;Q99996-4 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 0 119.27 0.00071409 182820000.0 38908.0 47922.0 46369.0 47188.0 45027.0 46929.0 40511.0 41427.0 49578.0 47563.0 False True 38698.523651085176 49517.05480053928 52897.3521534269 53161.99596170537 50760.92155406181 43684.90868898337 38551.32816295149 44518.49310204354 37360.16621116392 44527.488619266995 0.8690928873617266 1.1120558633776911 1.1879707073921586 1.1939140879079857 1.1399906693165178 0.9810773085028864 0.8657871655997768 0.9997979783387207 0.8390360060638636 1.0 15.442408624640358 2.604705122703305 4.338760965860403 0.9310647832041233 1.1106967964969159 0.41868495516382753 0.09732548678768288 0.2259770612963303 6.936986604085556 0.03295713825231707 0.030778873811230248 402.4436902943317 -2.604705122703305 0.17963201329279255 ALNFGGIGVVVGHELTHAFDDQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALNFGGIGVVVGHELTHAFDDQGR 24 0 B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892;P42892-2 B4DKB2 ECE1 Endothelin-converting enzyme 1 0 ; 210.88 2.123e-25 121015000.0 63938.0 94574.0 100502.0 91274.0 94261.0 91573.0 83629.0 31818.0 94022.0 79214.0 False True 63593.76491217959 97721.83841880965 114651.80802095607 102829.27904146591 106264.57962128092 85242.77404965529 79583.54577619584 34192.42072853022 70851.53793025248 74158.49470148269 0.857538508139488 1.3177430153103666 1.5460374227183953 1.3866149718301926 1.4329387354616343 1.1494674263925018 1.0731548165392397 0.46107220576911995 0.955406905378244 1.0 16.178324339414367 2.106126827747167 2.783306838410259 0.7508796098668865 1.313930751858947 0.45919617924465705 0.22513255220296624 0.20114965239008684 3.089146733716658 0.10292423799166596 0.06599322568022851 127.68116238153506 -2.106126827747167 0.5630511419920604 ALNHSVEDIEPDLLT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALNHSVEDIEPDLLTPR 17 0 Q8IWR0;I3L2K5 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR 259.6 1.2106e-26 471638000.0 364395.0 434643.0 376474.0 430516.0 428846.0 397749.0 380380.0 380934.0 491182.0 396421.0 True False 362433.1378080902 449109.8295077586 429478.26682933053 485019.2814582 483456.99613061437 370253.5478304345 361979.5662072888 409361.2294236576 370136.7776015962 371121.0723869071 0.9765900262064359 1.210143704908099 1.1572457043926192 1.3069031039890666 1.3026934661004455 0.9976624217242825 0.9753678600872118 1.1030395735569651 0.9973477798525955 1.0 18.50153039453715 2.7209623791506172 24.690814878961653 1.0244946345751138 1.1963900324711987 0.47714100642563617 0.09175331659847481 659.2113853250892 924890.3724069232 0.03058414146617188 0.028898788252066328 525.9717020096733 -2.7209623791506172 0.17189539789608488 ALNS(ph)ALAEEITLHYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALNSALAEEITLHYAR 16 0 A0A494C178;Q6ZSY5-2;Q6ZSY5 A0A494C178 PPP1R3F Protein phosphatase 1 regulatory subunit 3F 1 ALNS(1)ALAEEITLHYAR;ALNS(1)ALAEEITLHYAR;ALNS(1)ALAEEITLHYAR;ALNS(1)ALAEEITLHYAR 240.31 4.7546e-20 288641000.0 181573.0 170502.0 150256.0 197714.0 218081.0 180980.0 146617.0 151567.0 124544.0 206298.0 True False 180595.43114265695 176177.05599936462 171410.73875143548 222744.57212792683 245852.3226826429 168469.27858109507 139524.57557866897 162877.69918163132 93851.80000409852 193131.8850193962 0.9350886370964576 0.9122111347987474 0.8875320547625822 1.1533288359172627 1.272976353220764 0.8723017360089234 0.7224315941650782 0.8433496062303413 0.4859466886820527 1.0 17.55922683946048 2.484999842346709 20.243236166177837 0.7637185949723269 1.0290881173572997 0.3860901579087619 0.16077416667371855 32.53603379270124 83602.40788051434 0.05516920917826183 0.04833317875967456 305.49200042484415 -2.484999842346709 0.2653695223849728 ALNSDMPLYILSSS(ph)QGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALNSDMPLYILSSSQGR 17 0 Q8ND04;Q8ND04-2 Q8ND04 SMG8 Protein SMG8 1 ALNSDMPLYILS(0.012)S(0.256)S(0.732)QGR 127.44 4.2216e-05 27080000.0 76358.0 82776.0 76329.0 81872.0 78895.0 73848.0 75722.0 74162.0 87633.0 83415.0 True False 75946.8970121714 85531.14912085135 87075.45973643869 92236.98680547468 88941.81060269855 68743.06157949338 72059.03757386922 79696.34502700547 66037.02137203855 78091.38328482563 0.9725387593041787 1.095269996804774 1.1150456820420904 1.1811416692294368 1.138945256972818 0.8802899716702961 0.9227527358690215 1.0205523538535104 0.8456377463718275 1.0 16.25287574765974 2.744468723395869 24.95902059896332 0.9412893551691147 1.1055711955578729 0.5918248183856607 0.06903735734285647 349.956847714627 1478405.8933968004 0.02190172410756172 0.022678527341376226 555.2246300439642 -2.744468723395869 0.16428184038875815 ALPAAHIPAPPHEGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALPAAHIPAPPHEGSPR 17 0 P17029;E9PC66 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 ALPAAHIPAPPHEGS(1)PR;ALPAAHIPAPPHEGS(1)PR;ALPAAHIPAPPHEGS(1)PR;ALPAAHIPAPPHEGS(1)PR 141.97 1.0096e-06 1113740000.0 231206.0 392227.0 369245.0 375321.0 345053.0 451259.0 404159.0 313335.0 387680.0 397652.0 True False 229961.21258540166 405282.03858877125 421231.4864649249 422836.6001174705 388993.45426063647 420064.52747942536 384608.2851326882 336717.64878289093 292141.45864585135 372273.5089129948 0.6177211299747536 1.0886674149126494 1.1315107746852118 1.1358224262374064 1.0449130678045353 1.128376092905391 1.0331336394461959 0.9044899535453818 0.7847495232708827 1.0 18.506003431696236 -0.6031512148017926 4.505854709966103 0.9999999868379346 0.9985657559866479 0.0 0.16261490801692133 20605977.28873526 4573156.136819558 0.2140409802901437 0.037968888545979775 0.24937262978023075 0.6031512148017926 -0.0014342308512866886 ALPAVQQNNLDEDLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALPAVQQNNLDEDLIR 16 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ; 208.82 3.2264e-11 311000000.0 39837.0 43564.0 37236.0 43746.0 49538.0 44966.0 58941.0 45770.0 47882.0 55529.0 False True 39622.52201830679 45014.00140500589 42478.50513888598 49284.23911462155 55846.370665270006 41857.606258578446 56089.79865351449 49185.58981535069 36082.122685928254 51985.091679231286 0.7621900960143251 0.8659021259933559 0.8171285991182871 0.94804563236562 1.0742766601214122 0.8051848117698155 1.0789593100962653 0.9461479864043593 0.6940859681188852 1.0 15.665810325029932 3.7393511467508436 23.16569408721867 0.9424373712110603 0.8201564407007996 0.19250863727124912 0.11196300030664046 40.542203570783165 1187970.6768563306 0.028470295390828657 0.04775892042572263 5487.204509347535 -3.7393511467508436 -0.12228093051026068 ALPESLGQHALR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALPESLGQHALR 12 0 O94760 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 0 ; 175.57 2.7318e-05 971580000.0 455840.0 709180.0 687210.0 707120.0 628350.0 702030.0 652780.0 633390.0 759760.0 658140.0 False True 453385.8080885849 732784.6275916368 783963.1946636013 796641.3194973529 708366.6479777633 653500.3185008633 621202.5375382368 680656.7780892504 572527.3282624125 616136.941737998 0.7358523363485965 1.1893210388012108 1.2723846624943462 1.2929614595907664 1.1496902717431678 1.060641351348729 1.0082215420908698 1.1047167147115946 0.9292209076888465 1.0 19.232891512385226 2.633525721376755 3.807170439836384 1.0288166640038394 1.1485727772041006 0.10815764373041215 0.1500803966093627 0.5471904696429865 14.319245083603297 0.05162192751198012 0.04850360815815119 430.05670326783275 -2.633525721376755 0.11975611320026114 ALPFWNEEIVPQIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALPFWNEEIVPQIK 14 0 P18669;Q8N0Y7;P15259 P18669 PGAM1;PGAM4;PGAM2 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4;Phosphoglycerate mutase 2 0 ; 177.93 4.7484e-06 217760000.0 199068.0 219635.0 166336.0 196212.0 169728.0 237115.0 234575.0 181957.0 304220.0 255760.0 False True 197996.24000653392 226945.4182028385 189754.66298156985 221052.41908193065 191341.85474332733 220723.79815867156 223227.71108647875 195535.55529892433 229249.05733914828 239437.17783284758 0.8269235454518938 0.9478286549187043 0.7925029216391727 0.9232167747827723 0.7991317658985445 0.9218443023612651 0.9323017966838686 0.8166465920986956 0.9574497135912131 1.0 17.869287653914405 1.05449140746398 5.902613835857736 0.9996164980979597 0.8718192304119836 0.3869456376557402 0.055910707906855255 0.1570387815032099 10.732929863941024 0.04880165404002185 0.012282283161542153 11.336824079256662 -1.05449140746398 -0.1277972676859761 ALPLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALPLSPR 7 0 J3KTI7;J3QR52;J3QLN7;Q99741 J3KTI7 CDC6 Cell division control protein 6 homolog 1 ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR 115.49 0.0059452 299749000.0 398290.0 454040.0 396210.0 387250.0 403340.0 456360.0 405800.0 376590.0 535600.0 515570.0 True False 396145.65089417895 469152.4469270246 451992.9240809441 436275.81029436307 454702.95821652096 424812.9073558883 386169.9036934589 404693.05808527296 403608.5566723021 482665.8811983155 0.8207450874933762 0.9720025077435739 0.9364509522794121 0.9038878182381989 0.9420656730233947 0.8801386712920426 0.8000770693273661 0.8384538328678646 0.8362069340187509 1.0 18.880665323250206 2.481200005223763 24.414103603454116 0.8500376452063224 0.9180000928730067 0.0832156036636168 0.06229268000262861 190.88392579113636 1142585.8610176875 0.019834671505712023 0.016972990979157512 302.83077306907455 -2.481200005223763 0.06796244766668424 ALPNNTSSS(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 8 ALPNNTSSSPQPK 13 0 P04637-7;P04637;P04637-4;A0A087WZU8;A0A0U1RQC9;A0A087X1Q1;A0A087WT22;J3KP33;A0A087WXZ1;E7ESS1;P04637-5;P04637-9;P04637-8;P04637-6;P04637-2;P04637-3 P04637-7 TP53 Cellular tumor antigen p53 1 ALPNNT(0.145)S(0.211)S(0.316)S(0.328)PQPK;ALPNNTS(0.001)S(0.006)S(0.994)PQPK;ALPNNTS(0.001)S(0.022)S(0.978)PQPK;ALPNNTSS(0.001)S(0.999)PQPK;ALPNNTSS(0.006)S(0.994)PQPK;ALPNNTS(0.002)S(0.076)S(0.922)PQPK;ALPNNTSS(0.009)S(0.991)PQPK;ALPNNTSS(0.065)S(0.935)PQPK 279.55 2.4538999999999998e-32 17059690000.0 10015750.0 8556400.0 8001410.0 7817790.0 7981730.0 9650890.0 9437260.0 9774140.0 14390270.0 9947210.0 True False 9961826.31485443 8841194.60154697 9127938.978497531 8807521.41242393 8998156.004079819 8983746.690051412 8980743.67996583 10503535.958877262 10843980.77823885 9312370.541565066 1.0697411867784434 0.9494032225291038 0.9801949930746056 0.9457872593355493 0.9662583725504935 0.9647110421512045 0.9643885667866151 1.127912158563227 1.1644704997333983 1.0 23.15071703391087 1.7427334833301773 7.435459478838955 1.1081915126584594 0.9740823024398905 0.5327028980909461 0.05117985866093154 0.0823039933977975 14.509577773141283 0.023400700370981926 0.012439947293649339 55.30106349831602 -1.7427334833301773 -0.13410921021856892 ALPPEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALPPEKK 7 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQD4;A0A087WZF3;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 75.854 0.06789099999999999 478000000.0 519590.0 485610.0 439350.0 431020.0 417010.0 542590.0 565540.0 499440.0 731030.0 534620.0 False True 516792.58517187624 501773.23529255594 501206.661101341 485587.0878065238 470113.7516880829 505082.03041947464 538182.6696273999 536710.7489049329 550877.4518001367 500500.09388879046 1.0325524240295265 1.0025437385912825 1.0014117224375738 0.970203789640886 0.93928803895997 1.0091547166256922 1.0752898474919814 1.0723489474992751 1.1006540428792406 1.0 18.933010814133205 2.33302601307275 4.519054718057441 1.0687898996139709 0.9883352911971701 0.5160317370625959 0.033087366811802334 0.15589080095794958 5.617603404923196 0.011897453766571954 0.009738129161034951 215.29106844287458 -2.33302601307275 -0.08045460841680074 ALPQT(ph)PRPR ddPTM_BT-474_Trastuzumab_2h_R1 8 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR 122.69 0.00093559 70921290000.0 3761944.0 4477770.0 4033886.0 4311220.0 3918540.0 3996110.0 4108250.0 3710963.0 4724350.0 4024310.0 True False 3741690.1114952704 4626809.867580879 4601822.085634337 4857020.009960653 4417542.841993771 3719868.321531112 3909518.2524609454 3987893.902948287 3560097.2455466622 3767475.090414874 0.9931558992957366 1.22809302159749 1.2214605206925429 1.2891976438856292 1.172547325722945 0.9873637468752263 1.0377024820701415 1.0585057119804715 0.944955748905728 1.0 21.84516654244688 2.785877941218559 6.102210302272622 1.0160317473990674 1.1928994055157935 0.5578907547135694 0.07740291359139745 0.16377162818486726 15.361393272737455 0.024006993670415665 0.02525790334804671 610.7703433298548 -2.785877941218559 0.1768676581167261 ALPSLNTGS(ph)SSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 ALPSLNT(0.006)GS(0.49)S(0.307)S(0.197)PR 100.55 0.0024644000000000003 4089200000.0 582940.0 767010.0 678590.0 742890.0 690660.0 733510.0 721240.0 582860.0 741550.0 704010.0 True False 579801.5158107228 792539.4641826642 774129.5735899842 836939.7978297718 778611.4571374576 682804.1801968118 686350.8657956393 626355.9729031094 558804.938760914 659079.4790667158 0.8797141076699067 1.2024945235814857 1.1745617913733017 1.269861715335021 1.181362008478862 1.0359967225253184 1.0413779939978423 0.9503496813313862 0.8478566796711761 1.0 19.33009292622765 2.1526669711303805 1.5006529475477464 0.9264390916054077 1.1499590205938421 0.4096268245640936 0.10485382956184017 0.3791660760471897 1.6427255941923835 0.06382941868325245 0.03504123384364984 142.12385246389766 -2.1526669711303805 0.22351992898843442 ALPSLNTGSS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 ALPSLNT(0.003)GS(0.055)S(0.606)S(0.337)PR 87.824 0.0085912 1382000000.0 1719000.0 1922600.0 1780200.0 1919600.0 1858200.0 1789700.0 1792000.0 1662000.0 2015600.0 1859000.0 True False 1709745.094998853 1986592.578763759 2030836.686224213 2162621.1631789757 2094830.7555857091 1665982.2515006422 1705314.1138952158 1786026.8794649965 1518882.3876562582 1740357.0284300249 0.9824105439682185 1.1414856528351904 1.1669080844039397 1.2426307521106028 1.2036787402613904 0.9572646441423136 0.9798645255184097 1.0262416563319599 0.8727418356372779 1.0 20.73095186982809 2.7321041641357677 24.980286056831197 0.974652154793719 1.1534647685229675 0.5988405784063611 0.07353569813013255 377.43915503907874 1460324.2981139987 0.02441849933914851 0.023517297469736367 539.6400379233966 -2.7321041641357677 0.1788126137292485 ALPSLNTGSSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 ALPSLNTGSS(0.001)S(0.999)PR;ALPSLNTGSS(0.061)S(0.939)PR;ALPSLNT(0.001)GS(0.041)S(0.268)S(0.689)PR;ALPSLNTGSS(0.008)S(0.992)PR;ALPSLNT(0.001)GS(0.011)S(0.047)S(0.94)PR;ALPSLNT(0.008)GS(0.007)S(0.057)S(0.928)PR;ALPSLNTGSS(0.01)S(0.99)PR;ALPSLNTGSSS(1)PR 235.92 6.5122e-09 53457030000.0 15030430.0 18366080.0 17237010.0 17617690.0 15814630.0 17970180.0 18376250.0 15702840.0 17371580.0 17025140.0 True False 14949507.834917763 18977383.87027018 19663831.18122325 19848087.747617558 17828529.389844157 16727943.753853591 17487320.583407916 16874665.65820586 13090586.876246136 15938580.98924432 0.9379447169736125 1.1906570530385678 1.2337253356803097 1.2452857478975985 1.1185769549921172 1.0495252849135033 1.0971692269976052 1.0587307408101907 0.8213144498296261 1.0 23.926019856218183 1.468055931431626 3.3000123929966128 0.9119666724620302 1.1320060609693268 0.4336708181192114 0.09508241997329737 0.20631409605294646 4.350777429864105 0.07117116031142312 0.025345219906496675 29.380280070598356 -1.468055931431626 0.22003938850729654 ALPTSKPEGSLHSS(ph)PVGPSSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 ALPTSKPEGSLHS(0.213)S(0.787)PVGPSSSK;ALPTSKPEGSLHS(0.025)S(0.975)PVGPSSSK;ALPTSKPEGSLHS(0.206)S(0.794)PVGPSSSK 145.52 5.5706e-08 2639590000.0 2222150.0 2254720.0 2163350.0 2042180.0 2055260.0 2843110.0 2878530.0 2592950.0 3547910.0 2899970.0 True False 2210186.1913040774 2329766.992192976 2467930.875824714 2300719.7786105685 2316985.178519579 2646572.4976610513 2739284.5068475446 2786449.095733312 2673575.120058303 2714891.4318107716 0.8140974498674273 0.858143705083291 0.9090348317091486 0.8474444877068399 0.8534356664767998 0.9748354820567712 1.0089849173160135 1.026357467957683 0.984781597058225 1.0 21.372463075302253 2.6462287439340213 3.403090427965119 1.008077455951406 0.8583161486199727 0.8986402990713817 0.02405667552228102 0.07513432145877758 1.65700665640875 0.008536188182445524 0.008061562861678757 442.82154610962317 -2.6462287439340213 -0.14976130733143334 ALQAPHS(ph)PSKTDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQAPHSPSKTDGK 14 1 F2Z2Z8;Q5T173;Q96AQ6-3;Q96AQ6-2;Q96AQ6 F2Z2Z8 PBXIP1 Pre-B-cell leukemia transcription factor-interacting protein 1 1 ALQAPHS(0.995)PS(0.005)KTDGK;ALQAPHS(0.761)PS(0.12)KT(0.12)DGK 130.4 3.7632e-05 836390000.0 1326290.0 1216110.0 1171130.0 1036380.0 1071960.0 1567870.0 1300600.0 1066970.0 1833210.0 1212270.0 True False 1319149.4020046717 1256587.4861959824 1336014.924355558 1167585.6017375651 1208467.751995294 1459486.8372689902 1237685.0092255129 1146592.7193638782 1381439.9592554714 1134901.8907234375 1.162346642284459 1.107221246582801 1.1772074179063372 1.0287987105152265 1.0648213399529736 1.2860026485096854 1.0905656421424734 1.0103011799839265 1.2172329348882125 1.0 20.114136155047817 -4.999999997795076 0.25297481200765126 0.2735660973585133 1.1288280322728583 0.15675825051357983 0.08243843645610163 365.9356095435463 3.619239409280841 137.78750388844566 0.1168580317198179 1.0000000050770258e-05 4.999999997795076 0.8552619349143451 ALQDEWDAVMLHSFTLR ddPTM_BT-474_Trastuzumab_2h_R1 7 ALQDEWDAVMLHSFTLR 17 0 Q9UMS4;F5GY56 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 0 ;;;;;; 303.45 1.4115e-46 3372826000.0 1210692.4 1476198.0 1313786.5 1454557.4 1311548.9 1535102.0 1587736.5 1446218.6 1737910.0 1494997.0 False True 1204174.1666389722 1525332.3580494656 1498756.2195630318 1638704.2177008677 1478566.8782556248 1428984.0119814149 1510931.6197525635 1554142.7756812489 1309625.3673008978 1399585.0115286729 0.8603794387050012 1.089846165459751 1.0708575807953538 1.1708500764173095 1.056432346785913 1.0210055124987596 1.079556873863828 1.1104311370009334 0.9357240585696769 1.0 20.416567688950956 4.742218194244602 24.83020654614169 1.0681961763400976 0.8603793515358689 0.48251499129524955 0.061230233464485535 262.82999800413427 1784191.484653802 0.014084906464482046 0.10536824721331675 55235.487864540104 -4.742218194244602 -0.2078168248042287 ALQDLENAASGDAAVHQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQDLENAASGDAAVHQR 18 0 Q96P16;A0A0C4DGQ6;Q96P16-3;K7EP82 Q96P16 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A 0 ; 297.63 2.1678e-49 757030000.0 621140.0 806110.0 756140.0 740390.0 772520.0 809150.0 769120.0 690540.0 794750.0 785530.0 False True 617795.8512551419 832940.884046215 862597.9395133008 834123.2980861039 870895.8429152253 753215.3650342205 731914.7272762777 742071.6012910694 598894.5116043919 735396.802873932 0.8400850382280621 1.1326414267659044 1.1729693903240623 1.1342492853196375 1.1842529631781955 1.0242298607916889 0.9952650384336098 1.009076458302582 0.8143828056688729 1.0 19.48816337889759 1.9984082528785327 1.4189967205529426 0.9284381029332418 1.0985656214305937 0.28180343084472803 0.10405830918682411 0.5246468720058762 1.9673655987841552 0.07177819538977973 0.03396004309609443 99.6341575208725 -1.9984082528785327 0.17012751849735186 ALQDSAPDRPSPVER ddPTM_BT-474_Trastuzumab_2h_R1 1 ALQDSAPDRPSPVER 15 1 A0A1B0GV09;Q9H9B1-3;Q9H9B1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GWF6 A0A1B0GV09 EHMT1 Histone-lysine N-methyltransferase EHMT1 0 69.594 0.038456 0.0 139580.0 160630.0 174410.0 167720.0 151310.0 151700.0 157920.0 131880.0 178020.0 180260.0 False True 138828.51678879577 165976.47244711447 198965.41200110392 188953.3348032811 170578.431615366 141213.33606338897 150280.80628701602 141721.5552730708 134149.3563457865 168755.6524716498 0.8226599509733064 0.9835313366762501 1.179014800908842 1.1196859603563465 1.0108012923835092 0.8367917399810485 0.8905230970693708 0.8398033084958701 0.7949325215540439 1.0 17.364576300489134 2.801150501593254 5.264467039042802 0.8623178971702925 1.0368938160143772 0.3541355962980802 0.10078480775081117 0.22662141479908804 12.836843371346783 0.03246568838678005 0.034242490753970796 632.6310470807244 -2.801150501593254 0.17457591884408474 ALQEFDLALR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALQEFDLALR 10 0 B7Z6D5;Q96GQ7 B7Z6D5 DDX27 Probable ATP-dependent RNA helicase DDX27 0 85.37700000000002 0.033224000000000004 17626000.0 18022.0 34698.0 27345.0 27647.0 25906.0 24151.0 24218.0 25590.0 27824.0 25425.0 False True 17924.97155443244 35852.901954616085 31194.938312999187 31147.107365289234 29204.975543108038 22481.498215338874 23046.48281825576 27499.655743387033 20967.148022498382 23802.354732562373 0.7530755572645302 1.5062754234801896 1.310582027009434 1.3085725221412237 1.2269784175241583 0.9445073173614825 0.9682438177735182 1.1553334135368816 0.8808854526403079 1.0 14.538816683878748 2.787469186209847 7.389720983969721 1.0105426489900882 1.2475878314346138 0.2606219015824732 0.19067068586573543 0.3628926643527195 48.22643098187044 0.05631129018155325 0.0595018016746224 613.0122965421664 -2.787469186209847 0.23704518244452566 ALQHTES(ph)PSETNKPHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQHTESPSETNKPHSK 17 1 Q14669-3;Q14669;Q14669-2;G5E9G6;C9JLD7;C9JLJ5;C9JSX9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 ALQHTES(1)PSETNKPHSK;ALQHT(0.031)ES(0.887)PS(0.06)ET(0.022)NKPHSK 218.69 2.758e-15 139269000.0 153076.0 169282.0 157129.0 169372.0 156319.0 210941.0 211109.0 159956.0 251204.0 203146.0 True False 152251.85582434258 174916.44903687004 179251.39741024835 190814.47783389766 176225.29807469694 196359.1451717031 200896.85115530412 171892.7289601101 189298.14016114446 190181.04835795934 0.8005627118942665 0.9197364855600215 0.9425302834216206 1.003330665602106 0.9266186068288211 1.0324853441869524 1.0563452714656165 0.9038373194608387 0.9953575384906225 1.0 17.537013962474205 5.339807480034185 0.9481599374906793 0.9843388193753868 0.41394853122577957 0.6354029578012778 0.043054664762845786 3.7214742021000053 1.1851893176674226 0.013654102571869609 2.859058871746434 218679.20181418204 -5.339807480034185 -0.5703902881496072 ALQLEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 ALQLEEER 8 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ;; 124.08 0.0030711 1057600000.0 1154440.0 1427940.0 1439690.0 1393830.0 1240830.0 1422750.0 1494520.0 1193130.0 1707560.0 1470780.0 False True 1148224.6233103417 1475468.1196920422 1642385.837990193 1570288.7350873898 1398842.3455243842 1324398.6412932528 1422224.3579791724 1282167.41919138 1286754.7181317317 1376913.5612018916 0.833911914055135 1.0715764309882485 1.1928024273045679 1.1404410409878623 1.0159260428108146 0.9618604091147166 1.032907509994839 0.9311894771899778 0.9345210581037046 1.0 20.393006563263572 3.004151654069179 23.35853450255226 0.971827824995165 1.0710588664176084 0.16536121632862277 0.09140095435266875 88.61335395199056 498550.16112365224 0.02754138754214944 0.032757881657508044 1009.6053750905315 -3.004151654069179 0.09923104142244343 ALQLILDVLNPETSEDENDRVVVTDDSDERR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALQLILDVLNPETSEDENDRVVVTDDSDERR 31 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 ;; 186.56 1.1170999999999998e-18 302480000.0 138586.4 177899.3 193032.4 206838.0 194287.7 192245.8 185054.1 160498.8 189066.8 192003.6 False True 137840.26622079662 183820.57065810237 220209.68405230137 233023.6695924218 219029.08696158082 178956.30034393579 176102.3262076879 172476.03545239242 142473.82050532248 179749.765865448 0.7668453171948897 1.0226470658977191 1.2250902413811193 1.2963781536541865 1.2185222378845013 0.9955857215296394 0.9797082369470769 0.9595341313629285 0.79262312147862 1.0 17.45563036590819 2.5161536052180424 4.361474509617181 0.9384883592340965 1.1187059701652347 0.23632211856831087 0.146125756325514 0.32997390775190705 14.055809736046458 0.05372621533821718 0.04846668555775969 328.21135736134073 -2.5161536052180424 0.1802176109311382 ALQLLHCFPLDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQLLHCFPLDIR 13 0 A0AVT1;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ; 122.45 0.00023492 298120000.0 308810.0 452680.0 482360.0 404860.0 272910.0 345830.0 424820.0 286320.0 577010.0 338710.0 False True 307147.40127201646 467747.18014916114 550272.0952517205 456115.23448876897 307663.4708356989 321923.5860962547 404269.8336300029 307686.65230350016 434813.6170378733 317093.2378157797 0.9686343467546873 1.4751092876376828 1.7353637026198891 1.438426242169681 0.9702618477611333 1.015233211259085 1.2749241718767583 0.9703349539174202 1.3712484694816642 1.0 18.274547585957205 3.251940535965659 24.907344498499715 1.0981574995358638 1.4330768124375606 0.3202367341600444 0.21538614976159515 246.53002185935648 458924.38449224335 0.05961676265835425 0.08025889600778231 1786.242983933722 -3.251940535965659 0.33491931290169674 ALQPIVSEEEWAHTK ddPTM_BT-474_Trastuzumab_2h_R1 5 ALQPIVSEEEWAHTK 15 0 P43155-2;P43155;P43155-3;B7ZBP5;A6PVN3 P43155-2 CRAT Carnitine O-acetyltransferase 0 ;;;; 280.5 1.0362999999999999e-33 3150500000.0 2280418.0 2775970.0 2491490.0 2430818.0 2651430.0 3454390.0 2881260.0 2370079.0 3157960.0 2547880.0 False True 2268140.4828662593 2868366.483340699 2842270.1355807036 2738559.309562615 2989073.8942431444 3215596.1500593913 2741882.446317933 2546946.3299973058 2379723.072496009 2385272.117050185 0.9508938064774011 1.2025321818996262 1.1915915652825717 1.1481119030349178 1.2531374818314935 1.3481045315852895 1.1495050928230195 1.067780196561833 0.9976736220096187 1.0 21.18572243074351 1.6371797469558595 2.711142085573106 1.0053747142459621 1.188706348243653 0.37640841960056604 0.09438132399029636 0.24597391623938789 4.175391369759534 0.06446360746464601 0.026287283169045307 43.36903381585621 -1.6371797469558595 0.18333163399769092 ALQQYTLEPSEKPFDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALQQYTLEPSEKPFDLK 17 1 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 176.28 1.0257e-09 410920000.0 444660.0 387080.0 392810.0 358290.0 339670.0 497570.0 419670.0 452210.0 727370.0 484830.0 False True 442265.9999663698 399963.72380519874 448114.2336342731 403649.47726369876 382924.9611181778 463174.1570537933 399368.9588049138 485956.2064758523 548119.4097586492 453887.73431615427 0.9743951345869828 0.8811952682700279 0.9872798927017058 0.8893156759828584 0.8436556711432357 1.0204597349422326 0.87988488917115 1.0706528723628403 1.2076100945632915 1.0 18.791975976415294 1.6160913308295788 4.847707931778843 1.1139449805789499 0.9254233708602662 0.5447375717560664 0.07029426644397307 0.10030401346032833 5.178678392235886 0.036520615487109796 0.016919605948562084 41.313437377758085 -1.6160913308295788 -0.1885216097186837 ALQS(ph)PALGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQSPALGLR 10 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 ALQS(1)PALGLR;ALQS(1)PALGLR 122.52 0.00051018 199513000.0 493830.0 527870.0 458590.0 480580.0 439540.0 510390.0 481260.0 482400.0 594380.0 497110.0 True False 491171.2741496709 545439.8338458459 523155.485864263 541421.3787250229 495512.8136423112 475107.9406288272 457979.6152082659 518399.1375775657 447903.0132839486 465384.01420271734 1.0554107127876569 1.1720209916970996 1.1241372069053943 1.1633862835889852 1.0647396526741677 1.020894414353206 0.9840897006160891 1.1139169411860275 0.9624374701638244 1.0 18.828062129901696 3.0545069886283756 4.589979724949077 1.0290419986403985 1.1310849943619603 0.5402079525946735 0.04810980328189369 0.16869264526353644 7.474861366355407 0.014025533285089114 0.01670913363125516 1133.72308173014 -3.0545069886283756 0.10204299572156184 ALQS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQSPK 6 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 ALQS(1)PK;ALQS(1)PK 99.7 0.040384 3626700000.0 7591700.0 5289700.0 4679400.0 4313100.0 3912600.0 4256000.0 6937000.0 5631100.0 9778000.0 7048600.0 True False 7550827.130717155 5465764.466808823 5338218.845926067 4859138.017767891 4410846.418202908 3961792.7375463615 6601430.808086555 6051321.276146414 7368342.918487255 6598752.313389932 1.1442810355823343 0.8283027165177735 0.8089739684718823 0.7363722393258976 0.6684364268761217 0.600385125761918 1.0004059092642694 0.9170402204470242 1.1166266846439592 1.0 22.65376183600005 2.1861140786157334 24.99952745234196 0.9925021562572867 0.7910151394093057 0.3425109923369377 0.14215520742100543 125.40445090762535 59775.2343151248 0.05561839300309215 0.04107694398950311 153.50201423679985 -2.1861140786157334 -0.20148701684798098 ALQSGQCAGAALDVFTEEPPRDR ddPTM_BT-474_Trastuzumab_2h_R1 6 ALQSGQCAGAALDVFTEEPPRDR 23 1 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YF78 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 ;;;;; 253.9 1.5179e-43 6072720000.0 973088.0 1269753.0 1122228.0 1248842.0 1205006.0 1076520.0 1093359.0 997828.0 1240907.0 1203888.0 False True 967849.0023282408 1312015.9610231018 1280227.947819362 1406945.2691533454 1358456.3714698679 1002102.7062555002 1040469.0481330125 1072290.9922279166 935102.0971518975 1127054.8371396286 0.8587417137435487 1.164110137136618 1.1359056415289197 1.2483379005089543 1.2053152399554197 0.8891339385036078 0.9231751764391841 0.9514097778501195 0.8296864237104105 1.0 20.10412628123602 2.731449486904204 24.848163031529527 0.9190835006690976 1.1325325333632479 0.48171422782703055 0.10544011452080974 435.44374249170016 1521551.9408266987 0.03390659666068745 0.032597226553137126 538.8271703623625 -2.731449486904204 0.21344903269415028 ALQSNIIPFCDEVMQLLLENLGNENVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALQSNIIPFCDEVMQLLLENLGNENVHR 28 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 59.18899999999999 0.034167 79959000.0 47734.0 50396.0 53224.0 53935.0 47791.0 49067.0 57328.0 39490.0 62299.0 49675.0 False True 47477.00544774594 52073.4003949747 60717.47656869874 60763.16546991985 53876.90057055026 45675.11378129403 54554.82562577284 42436.94432615687 46946.246213830775 46504.698971092854 1.0209077039130492 1.1197449192681224 1.305620247245133 1.3066027049802 1.158525950335469 0.9821612609445233 1.1731035106728445 0.9125302445788438 1.009494680161512 1.0 15.505088877270918 2.8329161452243294 4.839834148547404 1.0153631038611313 1.1958040901741784 0.41542481532584163 0.09897883364669541 0.23033280179864465 8.919915550460388 0.03244681073604601 0.034452763883988144 680.6379265585159 -2.8329161452243294 0.18044098631304717 ALQTS(ph)PQPPEGPGLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALQTSPQPPEGPGLPR 16 0 B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;A0A2R8YGT1;F8W9A8;Q6PFW1;H7C398;Q6PFW1-5 B7WPL9 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 ALQT(0.089)S(0.911)PQPPEGPGLPR;ALQT(0.011)S(0.989)PQPPEGPGLPR 189.59 1.0410999999999998e-09 364140000.0 386320.0 402610.0 393260.0 413120.0 400790.0 434770.0 452440.0 360770.0 447820.0 428090.0 True False 384240.0960441866 416010.6304671153 448627.5897228032 465420.94964185194 451828.23083155474 404715.3732384945 430553.7487113574 387692.4893529407 337460.7614805645 400768.92969371186 0.9587571979141262 1.0380311437442318 1.11941709170336 1.1613199406389874 1.1274033423121523 1.0098471793903752 1.0743191819795228 0.9673716214708439 0.8420332427927216 1.0 18.612411139870325 1.6211999734842593 3.457146324820487 0.9162593276293086 1.0743915345822386 0.46423036126537476 0.0664401798871936 0.1638460568953287 4.618804097187472 0.04236415201655525 0.01822386064087854 41.802280343175426 -1.6211999734842593 0.15813220695292995 ALRPEAPPPPPPAFSFQEFLPSLNS(ph)SPLDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALRPEAPPPPPPAFSFQEFLPSLNSSPLDIR 31 1 Q9P107;K7EJC2;Q9P107-2 Q9P107 GMIP GEM-interacting protein 1 ALRPEAPPPPPPAFSFQEFLPS(0.127)LNS(0.436)S(0.436)PLDIR;ALRPEAPPPPPPAFSFQEFLPS(0.02)LNS(0.49)S(0.49)PLDIR 90.672 0.00032536 127752000.0 76170.0 86942.0 77448.0 90890.0 74952.0 80032.0 86490.0 75784.0 89088.0 87727.0 True False 75759.90918328254 89835.81191245108 88352.00520991614 102396.66468083824 84496.69292469048 74499.5762150636 82306.14827611446 81439.38690335465 67133.45611803964 82128.18775313663 0.9224592829322369 1.0938487061529016 1.0757817459151449 1.2467907484897292 1.02883912620443 0.907113358436651 1.0021668628986766 0.9916131005854847 0.8174228356265621 1.0 16.32558984335748 2.9967991601199895 24.99895486188877 0.9536591903098163 1.0913688586493435 0.35594728826531097 0.08922070353213121 150.17692117289135 1172916.6187742501 0.02601557338778516 0.0305467134602323 992.656887174793 -2.9967991601199895 0.13770966833952725 ALRPGDLPPS(ph)PDDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALRPGDLPPSPDDVK 15 1 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 1 ALRPGDLPPS(1)PDDVK 92.563 0.0031456999999999995 2760200000.0 478640.0 447520.0 371390.0 367310.0 407530.0 441660.0 446810.0 419620.0 557620.0 378160.0 True False 476063.0554219033 462415.43266844715 423678.4838202505 413811.4083388574 459426.5298804449 411129.0837558095 425196.0933200457 450934.17518718535 420202.0227251847 354025.5050409358 1.344714006881669 1.3061641776769113 1.1967456519022852 1.1688745653819732 1.2977215577372643 1.1612979231772322 1.2010323755371253 1.2737335835028158 1.1869258478329037 1.0 18.433493774492536 -4.999999999999998 0.184520066209699 0.018114002903900795 1.2841766734102273 0.6427139444391048 0.0560615014084851 92.07818345818411 0.8937541479294147 33.239434886939456 0.17193449090621368 1.0000000000000041e-05 4.999999999999998 1.2660626705063265 ALRPGDLPPS(ph)PDDVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALRPGDLPPSPDDVKR 16 2 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 1 ALRPGDLPPS(1)PDDVKR;ALRPGDLPPS(1)PDDVKR;ALRPGDLPPS(1)PDDVKR 144.72 6.7274e-07 882337000.0 827852.0 816707.0 706616.0 709515.0 697185.0 849554.0 781170.0 725091.0 1052153.0 800320.0 True False 823394.9368150033 843890.5987851927 806101.3907836252 799339.5262517884 785967.3772107533 790826.331615005 743381.8227408066 779200.9723574932 792863.9912778806 749242.8924115757 1.0989692997483842 1.1263244634446594 1.0758879382746496 1.0668630084417183 1.0490154597008896 1.0555006121841015 0.9921773436489947 1.0399844699887537 1.0582202371328508 1.0 19.515073967314855 3.6219947093381513 0.831677925167466 1.0270057119971436 1.1192833541063434 0.6940437768126377 0.021296953857755426 0.42879043026194563 0.5625241948147611 0.009174474629150595 0.027240879555586444 4187.884633223998 -3.6219947093381513 0.09227764210919975 ALRPPT(ph)SPGVFGALQNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALRPPTSPGVFGALQNFK 18 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 ALRPPT(0.633)S(0.367)PGVFGALQNFK;ALRPPT(0.5)S(0.5)PGVFGALQNFK 160.77 6.4266e-11 1047440000.0 710140.0 772530.0 799960.0 758480.0 640220.0 858040.0 673600.0 708930.0 862720.0 826560.0 True False 706316.6851439719 798243.1940457543 912587.4146230322 854503.4902312928 721748.2221187606 798725.7144089014 641015.3945981124 761833.9564735984 650114.2158557299 773808.2331463809 0.9127800078735507 1.0315775406007486 1.1793457028912209 1.1042832754011895 0.9327223350726844 1.0322011064178054 0.828390507027407 0.98452552433554 0.8401490033419535 1.0 19.561616553251884 3.228105737794878 24.84099792241729 0.9359120709583431 1.0639202008017876 0.31570160969894245 0.0867901915545547 222.69341075935066 529122.9763628801 0.025107334634210086 0.030318473378190623 1690.852553860589 -3.228105737794878 0.12800812984344456 ALS(ph)AVSTQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALSAVSTQQK 10 0 Q08379;B7ZC06;H0Y7B8 Q08379 GOLGA2 Golgin subfamily A member 2 1 ALS(1)AVSTQQK 96.229 0.0055758000000000005 0.0 115390.0 55469.0 38874.0 51694.0 38815.0 53388.0 42506.0 54170.0 79791.0 64307.0 True False 114768.75306103428 57315.252133281414 44347.12130113476 58238.455099694744 43757.860175470465 49697.41322183394 40449.82239131144 58212.440469686444 60127.57719462219 60202.872204007406 1.9063667373231188 0.9520351776416778 0.7366279992565337 0.9673700434481612 0.7268400754566943 0.8254990402023681 0.6718919033337898 0.9669379273537638 0.998749312007406 1.0 15.877544697358855 4.735327300474764 4.132913822644045 0.8533902532184354 1.9907402139390087 0.8800292212921016 0.1149770954882786 0.06482613700223808 2.4517544084506477 0.026960395400360312 0.21846756660967387 54365.989946140704 -4.735327300474764 1.1373499607205733 ALS(ph)HDSIFIPESGQDATRPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALSHDSIFIPESGQDATRPVR 21 1 Q6NV74;C9JFM2;C9JXD6;C9JK00 Q6NV74 KIAA1211L Uncharacterized protein KIAA1211-like 1 ALS(0.99)HDS(0.01)IFIPESGQDATRPVR;ALS(1)HDSIFIPESGQDATRPVR;ALS(1)HDSIFIPESGQDATRPVR 199.89 4.692900000000002e-22 553200000.0 284085.0 407685.0 406518.0 451035.0 422433.0 421661.0 379198.0 371808.0 414754.0 432830.0 True False 282555.5179248107 421254.5487742136 463752.200882201 508135.9847543397 476227.33859344374 392512.56755322823 360854.74406296766 399554.2009627685 312543.4341188651 405206.41883559397 0.6973125419305194 1.0396048265591047 1.1444838465660168 1.2540176096285083 1.1752709642703498 0.9686731238887011 0.8905454782772795 0.9860510159511596 0.7713190600903946 1.0 18.62829750234914 2.5222996138042593 7.363878980366547 0.919381652668963 1.0760916720608396 0.18067016467211705 0.14989518989468337 0.4462122184753868 63.203139540875576 0.05113622753970119 0.04759192496428636 332.88912973722796 -2.5222996138042593 0.15671001939187656 ALS(ph)IESLSPTDSSNGVNWR ddPTM_BT-474_Trastuzumab_2h_R1 6 ALSIESLSPTDSSNGVNWR 19 0 H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8 H3BRG5;Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 1 ALS(1)IESLSPTDSSNGVNWR;ALS(0.994)IES(0.006)LSPTDSSNGVNWR;ALS(0.983)IES(0.017)LSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR 343.25 4.066599999999998e-76 1835025000.0 765780.0 837644.0 742961.0 811822.0 803995.0 857040.0 896447.0 735515.0 980884.0 914517.0 True False 761657.1255661567 865524.4741735092 847563.4508672213 914598.5819620151 906378.9975982843 797794.8420551531 853082.4338499028 790402.8641694922 739158.2813722086 856151.7421026042 0.8896286582278273 1.010947512701296 0.989968727723089 1.068266916932123 1.0586663006400339 0.9318381343193513 0.9964149950274427 0.9232041766665792 0.8633496201934088 1.0 19.70750699323331 1.979211141161697 1.6854988540428524 0.9220580110084308 1.0015064789879242 0.17502544511146845 0.059259409000772326 0.5525256365192033 2.923805454271596 0.037944956482870246 0.01839307128319035 95.32594980234914 -1.979211141161697 0.07944846797949345 ALS(ph)PGLEESGLGLLAR ddPTM_BT-474_Trastuzumab_2h_R1 9 ALSPGLEESGLGLLAR 16 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR 352.72 2.9204999999999986e-87 3163990000.0 414168.0 530314.0 505852.0 480452.0 510870.0 488450.0 532010.0 465954.0 551852.0 508459.0 True False 411938.1655063902 547965.1809084179 577071.5646555949 541277.1739381467 575926.2663362771 454684.6011876222 506274.6438244382 500725.85354646924 415855.469037945 476008.7113063491 0.8654004763397609 1.1511662872819972 1.2123130332465784 1.1371161096037006 1.2099069883736293 0.9552022691765337 1.063582728213162 1.0519258191142908 0.8736299549995195 1.0 18.86062845058236 2.727159032107179 24.914452787133886 1.003233941400333 1.1237946751755132 0.26258875433921625 0.10395798974642219 1039.9662033722832 2272503.5936847366 0.03368280711234005 0.032004371452890826 533.5302304668002 -2.727159032107179 0.12056073377518017 ALS(ph)PVIPLIPR ddPTM_BT-474_Trastuzumab_2h_R1 8 ALSPVIPLIPR 11 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR 199.82 5.1333e-08 6213766000.0 1476681.0 1999926.0 1773713.0 1813479.0 1704983.0 1750303.0 1754885.0 1559790.0 1932926.0 1774116.0 True False 1468730.7135706823 2066492.3279292013 2023436.3730102298 2043065.255459808 1922102.478824015 1629308.6733800785 1669994.5082382867 1676189.4502531337 1456582.287181417 1660890.3979828751 0.8843032119123768 1.244207522928017 1.2182841056024292 1.2301023944391984 1.1572723167996983 0.9809850640107547 1.0054814635971576 1.0092113557215088 0.8769888060948591 1.0 20.66352544244162 2.7406763442612134 7.518217622375196 0.980307962178739 1.1610712994652406 0.41238781765470345 0.10202314090650869 0.1221372501708648 59.73129525857215 0.0316257681982273 0.03175982945203083 550.3973627086621 -2.7406763442612134 0.18076333728650162 ALS(ph)PVTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSPVTSR 8 0 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A0A0A0MR80;A0A0A0MR72 Q96L91-4 EP400 E1A-binding protein p400 1 ALS(1)PVTSR;ALS(0.993)PVT(0.006)S(0.001)R 124.81 0.0013521 1377200000.0 1810050.0 2271720.0 2253610.0 2277660.0 2216240.0 2337650.0 2904580.0 2288980.0 2908820.0 2403790.0 True False 1800304.8919154583 2347332.8269162625 2570898.699270727 2566011.522466256 2498465.027316363 2176053.757736196 2764074.3688268787 2459795.310804924 2191980.2871910483 2250378.064211842 0.8000010845048765 1.043083766344113 1.142429683330184 1.140257969660293 1.1102423486301665 0.9669725244581616 1.2282711126563306 1.093058695302572 0.974049792810593 1.0 21.1017359643419 4.720206154986931 3.4592745720083213 1.092090228677768 0.7693842596856483 0.5292856863227141 0.078724485871144 0.19918987640930982 4.160070500927885 0.01847745338515374 0.16434724408209583 52505.6639924861 -4.720206154986931 -0.3227059689921198 ALS(ph)SDSILSPAPDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 ALS(0.868)S(0.132)DSILSPAPDAR;ALS(0.98)S(0.02)DSILSPAPDAR;ALS(0.5)S(0.5)DSILSPAPDAR;ALS(0.47)S(0.47)DS(0.06)ILSPAPDAR 414.89 2.3553999999999993e-133 4577220000.0 2598560.0 2359660.0 2137870.0 2449560.0 2006540.0 1932150.0 1900540.0 1841380.0 2692240.0 2297350.0 True False 2584569.641687155 2438199.85665541 2438863.513300845 2759674.044840955 2262060.9753056425 1798585.0182918722 1808603.6194321516 1978793.1259381787 2028773.5261677357 2150731.1561397086 1.201716743772909 1.1336609179139208 1.1339694904863413 1.2831329647886918 1.0517637078200683 0.8362667798610895 0.8409250102083271 0.9200560099244868 0.9432948048277352 1.0 21.036395766821336 2.9760340225299973 4.74858714644243 0.9011042797986234 1.1803659413761345 0.8300825063159967 0.059618042637074806 0.07440300982680344 4.316528439605197 0.018186978371648777 0.020318279385090374 946.3112922714173 -2.9760340225299973 0.2792616615775111 ALS(ph)VGNIDDALQCYSEAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSVGNIDDALQCYSEAIK 19 0 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 ALS(1)VGNIDDALQCYSEAIK;ALS(1)VGNIDDALQCYSEAIK 190.24 7.891500000000001e-15 145684000.0 87146.0 85590.0 78094.0 82399.0 85366.0 116851.0 116809.0 104361.0 153884.0 118579.0 True False 86676.81561883076 88438.81140975248 89088.9563947836 92830.70495144013 96236.85409607657 108773.36540766692 111158.50241628688 112148.94775442037 115961.35013995621 111011.18669941039 0.780793523571 0.7966657599041972 0.8025223316998986 0.8362283812243327 0.8669113172950857 0.9798414794195209 1.0013270348805061 1.0102490666827186 1.0445915730452426 1.0 16.760345540044312 2.863879865110681 1.2311705051281523 1.0210096107179127 0.7921200997782543 0.9803650559373579 0.013860024803595725 0.05255836888146196 0.1659767067066569 0.0059156343053973414 0.00626289531389475 730.9368631718245 -2.863879865110681 -0.22888951093965848 ALSAAVADSLTNS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSAAVADSLTNSPR 15 0 Q14687;Q14687-2;Q14687-3;H7C3B5 Q14687 GSE1 Genetic suppressor element 1 1 ALSAAVADSLTNS(1)PR;ALSAAVADSLTNS(1)PR 285.32 4.7221e-34 544420000.0 946960.0 989390.0 963890.0 931220.0 955040.0 1089210.0 1083310.0 921210.0 1073060.0 1018380.0 True False 941861.6725771464 1022321.2480511154 1099597.3337179292 1049112.3565198616 1076658.683034427 1013915.4764245466 1030906.1566539222 989955.3680095955 808618.7412673283 953386.1165210168 0.9879120917074773 1.0723055751867339 1.153359918571553 1.1004065806497767 1.129299729015608 1.0634888203788895 1.0813102255105018 1.0383572309842553 0.8481545170995815 1.0 19.862701091063073 1.4322770884424851 4.489231567877687 0.9247226036950211 1.0860616911990684 0.5759343818047509 0.0538336259914577 0.13412265366427864 4.8693416340540425 0.03650041910536824 0.013440718395393781 27.056840933254744 -1.4322770884424851 0.16133908750404724 ALSAIADLLTNEHER ddPTM_BT-474_Trastuzumab_2h_R1 6 ALSAIADLLTNEHER 15 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30 O60716-13 CTNND1 Catenin delta-1 0 ;;;;; 302.73 1.9581999999999998e-44 2602562000.0 1674515.0 2350233.0 2139164.0 2236099.0 2269764.0 2392250.0 2255963.0 1964996.0 2402291.0 2289273.0 False True 1665499.5972961043 2428459.084659148 2440339.697253195 2519188.904127602 2558804.991454759 2226879.3882507733 2146833.4510744405 2111633.9795675105 1810278.5721001895 2143169.6371947764 0.7771198174849562 1.1331156631342494 1.1386591406023223 1.1754500718967829 1.193934883663252 1.0390588545130592 1.0017095305084946 0.9852855055988273 0.8446734876618015 1.0 21.031314616750542 2.0047775206482843 1.7024031786041727 0.9345438112756623 1.09327143446639 0.20934571516232536 0.1167967357571641 0.5445877461117296 2.9480697084873952 0.07373637191478524 0.03663549712732275 101.10613774365683 -2.0047775206482843 0.15872762319072775 ALSAS(ph)HTDLAH ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSASHTDLAH 11 0 Q07866-6;Q07866-4;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 ALS(0.001)AS(0.998)HT(0.001)DLAH;ALSAS(0.998)HT(0.002)DLAH 130.56 0.00014272 378680000.0 1262160.0 866820.0 733380.0 969470.0 613720.0 698310.0 625930.0 457050.0 1138230.0 869850.0 True False 1255364.6707991601 895671.5796962457 836633.5293467656 1092204.8025980026 691873.6041965659 650037.4733449244 595651.3746151971 491157.391852874 857728.4680005868 814335.4282839487 1.541581794426645 1.0998804038081667 1.027381961153042 1.341222258866483 0.8496174674047439 0.7982428993845327 0.731457031005534 0.6031389213753003 1.0532864446387658 1.0 19.635263643674797 3.1626293647382213 5.934690475557531 0.7915793703953627 1.22470336402036 0.5513675587348822 0.1792305766264618 0.14766491453614086 8.74341050995756 0.05203110895580676 0.06288032416490426 1454.2174936884185 -3.1626293647382213 0.4331239936249972 ALSCHPDKNPDNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSCHPDKNPDNPR 14 1 H0YLQ7;Q9NVM6;S4R343;H0YK99 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 0 ; 176.89 1.2977e-06 365910000.0 239301.0 293460.0 323990.0 314800.0 313170.0 366980.0 346230.0 312550.0 367620.0 366740.0 False True 238012.6300048408 303227.6386996841 369604.9758284366 354653.64772282867 353050.3431959834 341611.53637799906 329481.53217295825 335874.0680967412 277024.9768556228 343334.3392180892 0.6932386388931896 0.8831847096630526 1.0765161931375005 1.0329687631319318 1.0282989578031183 0.9949821423513487 0.9596521365247666 0.9782711186468035 0.8068665007016788 1.0 18.3892546327576 4.618576860660953 3.216142708444848 0.9857707846630535 0.6837974115592612 0.6281878057568917 0.0682017173047796 0.17490513539213018 2.920042854646717 0.01689249452668714 0.1092779259860319 41550.558016987634 -4.618576860660953 -0.30197337310379224 ALSDHHIYLEGTLLKPNMVTPGHACTQK ddPTM_BT-474_Trastuzumab_2h_R1 6 ALSDHHIYLEGTLLKPNMVTPGHACTQK 28 1 P04075;J3KPS3;P04075-2;H3BQN4;H3BU78 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 ;;;;; 214.02 1.6731e-27 17953830000.0 11046980.0 12146000.0 12562200.0 11888280.0 12075070.0 17822170.0 18473460.0 10826870.0 19043040.0 16536190.0 False True 10987504.287114847 12550272.267587941 14330848.567400206 13393335.029067203 13612758.58995279 16590165.336775552 17579828.16432963 11634826.017131872 14350137.955662662 15480836.19685548 0.7097487595241572 0.8106973104035036 0.9257154061426692 0.8651557873719834 0.8793296703648256 1.0716582183167471 1.1355864722540314 0.7515631500251374 0.926961423348534 1.0 23.8839800649235 5.013467436764807 0.8166782120117526 0.9472855153402733 0.4621342190953692 0.3762434058894879 0.10102340805289091 4.429389382716534 1.6779204960018057 0.03764212589637544 2.153101233611951 103149.57353817296 -5.013467436764807 -0.48515129624490405 ALSFLVNDCSLIHNNVCMAAVFVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSFLVNDCSLIHNNVCMAAVFVDR 25 0 E9PS17;Q96KG9-2;Q96KG9;Q96KG9-3;E9PK59;Q96KG9-4;Q96KG9-5;Q96KG9-6 E9PS17 SCYL1 N-terminal kinase-like protein 0 ; 229.76 3.0914999999999995e-34 74969000.0 24614.0 34402.6 31999.7 34019.7 26564.6 35024.3 38567.2 29298.9 33113.5 35324.7 False True 24481.48095887247 35547.66974418913 36504.97961362151 38326.59053188156 29947.444349279973 32603.152579333928 36701.55719498862 31485.332694799632 24953.121623167066 33070.247403002766 0.7402872031930902 1.074913934298581 1.1038617029005615 1.158944777909388 0.9055706171270057 0.9858756779779511 1.1098059457413112 0.9520743014441668 0.7545489853487256 1.0 15.013246218115976 1.4720436552831713 7.386728511569911 0.8689627436174457 1.018293346624446 0.14987143580944418 0.12650418574427805 0.199819101722132 30.95820396957275 0.0699152365867849 0.03105287926939198 29.651294293674816 -1.4720436552831713 0.14933060300700018 ALSGGGSVAS(ph)PPPSPAMPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ALSGGGSVASPPPSPAMPK 19 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 ALSGGGSVAS(1)PPPSPAMPK;ALSGGGSVAS(1)PPPSPAMPK;ALSGGGSVAS(0.994)PPPS(0.006)PAMPK 208.43 4.6626e-25 110770000.0 483209.0 540206.0 468938.0 469596.0 459703.0 550027.0 521333.0 464256.0 590399.0 548003.0 True False 480607.45643356716 558186.4301485771 534960.3943178357 529046.8054512376 518243.45217684685 512004.9281142891 496114.13110453926 498901.1401642005 444903.0773912818 513028.97937102785 0.9368037201773487 1.0880212475188287 1.042748881308217 1.0312220687803009 1.0101640901693545 0.9980039114788521 0.9670294487316756 0.9724619080502079 0.8672084721933871 1.0 18.96868079581307 2.26357910013233 1.2067644992703739 0.9412549595083641 1.0292201313264 0.33671299189950343 0.04705701704667827 0.49358987621669137 1.395114896947547 0.02878130752371163 0.01676414314576037 183.47593101807757 -2.26357910013233 0.08796517181803587 ALSHDS(ph)IFIPESGQDATRPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALSHDSIFIPESGQDATRPVR 21 1 Q6NV74;C9JFM2;C9JXD6;C9JK00 Q6NV74 KIAA1211L Uncharacterized protein KIAA1211-like 1 ALS(0.344)HDS(0.656)IFIPESGQDATRPVR 178.79 3.6218e-17 1169000000.0 139930.0 217500.0 194780.0 188780.0 214780.0 198930.0 190710.0 188120.0 199010.0 226380.0 True False 139176.6324276844 224739.3560184735 222203.3309418901 212679.5286439508 242130.9598992027 185178.4373308503 181484.62871705162 202158.4696540042 149966.65209737656 211932.23458633124 0.6567034632524973 1.0604302665762024 1.048464059163095 1.003526099081049 1.1424923649383307 0.8737624915449911 0.8563332947972259 0.9538825938800468 0.7076160565668324 1.0 17.69324351066515 ALSS(ph)DSILSPAPDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 ALS(0.289)S(0.71)DS(0.001)ILSPAPDAR;ALS(0.278)S(0.721)DS(0.001)ILSPAPDAR 375.22 9.336799999999994e-98 3823100000.0 1317770.0 1185800.0 1047920.0 1153000.0 977100.0 948550.0 1020110.0 1035030.0 1312870.0 1103370.0 True False 1310675.2727380106 1225268.6361687628 1195458.0273160744 1298969.6817802477 1101527.8932745648 882978.9711465233 970763.3821013669 1112269.194375846 989330.7800566945 1032951.9819574171 1.2688636990214348 1.1861816014398952 1.1573219744936376 1.2575315256365878 1.0663882857237934 0.8548112463788502 0.9397952654699355 1.0767869308582234 0.9577703488035701 1.0 19.978341759633576 3.0579024131374255 4.81550022475884 0.9753971403653331 1.2091631608500728 0.7926470449015768 0.06044876459802416 0.09945255407504648 4.760400158923945 0.01914664712640529 0.022850622298627294 1142.62155652967 -3.0579024131374255 0.2337660204847397 ALSSDSILS(ph)PAPDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 ALSSDS(0.003)ILS(0.997)PAPDAR 132.63 4.8509e-05 104780000.0 148080.0 173060.0 143620.0 133650.0 180400.0 190710.0 165140.0 156550.0 213090.0 156820.0 True False 147282.75373323454 178820.19748302072 163840.44763258137 150570.07629655668 203372.87068542754 177526.66658305138 157151.54730393735 168232.55594479264 160576.82475971052 146811.61333964326 1.0032091493504762 1.2180248783815677 1.1159910575571603 1.0256005834376218 1.3852641903398466 1.2092140570129828 1.0704299457589437 1.1459076848068743 1.0937610527324018 1.0 17.163606569626264 0.8696332843829429 1.0856537667220383 1.0009202265119088 1.155864712697859 0.15798739719115784 0.10392264170275996 1.218798375326341 2.8445976178964387 0.09752418666316552 0.03110211565377861 7.406845476484998 -0.8696332843829429 0.15494448618595014 ALSSGGSIT(ph)SPPLS(ph)PALPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALSSGGSITSPPLSPALPK 19 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JW88;C9JRZ2;C9J0V6;C9JXQ0;C9JPV7;F8WCD5;C9JHT0;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 ALSSGGSIT(0.619)S(0.382)PPLS(0.999)PALPK 123.36 0.0001665 75296000.0 101730.0 93272.0 95872.0 74933.0 92054.0 95915.0 102770.0 81248.0 116720.0 96944.0 True False 101182.29698326555 96376.50213588527 109369.94426563753 84419.51011694632 103776.53125319481 89284.62180962403 97798.62248047513 87311.13832898426 87955.91996786988 90756.95092206598 1.1148710479503872 1.0619186867421853 1.2050861466198302 0.9301712900143406 1.143455462075945 0.9837772303114695 1.0775882341447973 0.9620325213873626 0.9691370090583874 1.0 16.469720520473466 2.821478504561261 0.5550866937976806 0.975191201583332 1.1173016243828582 0.2896750433404559 0.07208274442074167 1.14847598730538 0.7497089625872573 0.05585116148865295 0.07201091857770288 662.946534268991 -2.821478504561261 0.14211042279952624 ALSSGGSITS(ph)PPLS(ph)PALPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ALSSGGSITSPPLSPALPK 19 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JW88;C9JRZ2;C9J0V6;C9JXQ0;C9JPV7;F8WCD5;C9JHT0;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 ALSSGGSIT(0.003)S(0.997)PPLS(1)PALPK;ALSSGGSIT(0.094)S(0.906)PPLS(1)PALPK;ALSSGGSIT(0.019)S(0.981)PPLS(1)PALPK;ALSSGGSIT(0.024)S(0.976)PPLS(1)PALPK 299.22 1.1422999999999999e-49 1447210000.0 1370395.0 1365581.0 1195720.0 1115298.0 1097465.0 1394000.0 1313706.0 1142383.0 1576460.0 1302094.0 True False 1363016.9455851982 1411033.5380738527 1364066.982615445 1256494.61244592 1237220.6625653142 1297636.0611230333 1250157.0219357295 1227633.4203633347 1187962.5564817362 1218993.2461412423 1.118149710755057 1.1575400787006158 1.1190111076771243 1.0307642117160118 1.0149528444737257 1.0645145616932146 1.0255651751091623 1.0070879590592017 0.9745440019805404 1.0 20.217258702020995 3.754235965852205 3.218392454946656 1.0174689122494254 1.1383975189862976 0.839904905344308 0.02312332981774458 0.09468216940542834 2.0304899174676283 0.006523554141785389 0.012000876911525243 5678.530540313987 -3.754235965852205 0.12092860673687222 ALSSGGSITS(ph)PPLSPALPK ddPTM_BT-474_Trastuzumab_2h_R1 5 ALSSGGSITSPPLSPALPK 19 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JW88;C9JRZ2;C9J0V6;C9JXQ0;C9JPV7;F8WCD5;C9JHT0;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 ALSSGGSIT(0.002)S(0.998)PPLSPALPK;ALSSGGSIT(0.017)S(0.983)PPLSPALPK;ALS(0.001)S(0.001)GGS(0.003)IT(0.126)S(0.869)PPLS(0.001)PALPK;ALSSGGSIT(0.015)S(0.985)PPLSPALPK;ALSSGGSIT(0.128)S(0.872)PPLSPALPK 321.68 5.160499999999997e-62 4084990000.0 2388921.0 2339568.0 2221065.0 2013042.0 2107033.0 2471872.0 2325534.0 2087193.0 2622004.0 2243270.0 True False 2376059.314770076 2417439.10658128 2533771.6461569397 2267892.9107981557 2375351.1631869627 2300997.306800802 2213039.0360174105 2242949.9402113 1975846.2472535528 2100102.588039929 1.131401545953859 1.1511052461668208 1.2064989875193495 1.079896250646893 1.1310643473869193 1.0956594786868827 1.0537766338752468 1.0680192258153889 0.9408332042948686 1.0 21.00202837323533 2.0343558321279347 0.6880674788744533 0.9785007314503059 1.1534187148057609 0.7379763242709731 0.03719949122342203 0.35477090668238753 0.32385249280489864 0.032200702935674105 0.018658954034107365 108.23203697229785 -2.0343558321279347 0.17491798335545494 ALSSLHGDDQDS(ph)EDEVLTIPEVK ddPTM_BT-474_Trastuzumab_2h_R1 10 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 ALSSLHGDDQDS(1)EDEVLTIPEVK;ALS(0.022)S(0.022)LHGDDQDS(0.955)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALS(0.006)S(0.006)LHGDDQDS(0.989)EDEVLTIPEVK;ALS(0.001)S(0.001)LHGDDQDS(0.999)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALS(0.031)S(0.028)LHGDDQDS(0.913)EDEVLT(0.028)IPEVK 247.36 7.251399999999998e-38 8463856000.0 4262991.0 4575440.0 4621921.0 4221123.0 4869055.0 6082963.0 5268910.0 4957375.0 6415463.0 5555145.0 True False 4240039.530118827 4727730.754488112 5272647.302342492 4755516.738998504 5489100.293099964 5662462.085564674 5014032.694109173 5327319.495540187 4834458.106449885 5200610.890101084 0.8152964372299758 0.9090721944775646 1.0138515289383645 0.9144150253675433 1.0554722145331032 1.0888071046312433 0.9641237923900351 1.0243641772316177 0.9295942743287834 1.0 22.310249668799962 4.837521683484238 1.148382167907595 1.0056545579123675 0.6869982915202769 0.5617809583687228 0.05109653601653098 1.380697848366609 1.315812462892661 0.014643693949043602 0.5577040311764083 68789.42566823552 -4.837521683484238 -0.31865626639209055 ALSSQHQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALSSQHQAR 9 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;; 138.4 0.00013778 145331000.0 68967.0 147114.0 215798.0 105812.0 75449.0 85133.0 117779.0 82051.0 202436.0 100926.0 False True 68595.68933495405 152010.6005577092 246180.48265015893 119207.78835085128 85056.98292874062 79247.95609152608 112081.57981052727 88174.06226653581 152548.3603034245 94484.8162729042 0.7259969595202094 1.6088362824207758 2.6055031100352273 1.261660794328464 0.9002185354635945 0.8387374735706857 1.1862390618064775 0.9332088026912093 1.6145277762176422 1.0 16.52779488615515 3.49068323805908 24.841244075043452 1.0638246151408841 1.6914174315019659 0.22546455724169068 0.4681061282001189 785.2291212719269 1438288.3707584788 0.12644572741445362 0.18688215010942918 3095.1609540900404 -3.49068323805908 0.6275928163610818 ALSTGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSTGEK 7 0 P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37 P62937 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D 0 ; 120.62 0.01051 2919700000.0 3283100.0 2794300.0 2527800.0 2488300.0 2286700.0 2571300.0 3132500.0 2851200.0 4229500.0 3337900.0 False True 3265424.1543867043 2887306.5863099783 2883692.267968524 2803318.5248688543 2577897.6906672255 2393552.0831891387 2980969.007687928 3063971.0221002414 3187196.3973963805 3124872.364280038 1.0449784099066872 0.9239758459623376 0.9228192168523717 0.8970985685409686 0.8249609552488606 0.7659679513792258 0.9539490450115504 0.9805107744956398 1.0199445051992393 1.0 21.57536583328105 2.009025334659566 24.99765483328388 0.9902972179514198 0.8928405998739856 0.31499021117361314 0.06841444273722933 259.07211616302595 717554.3565959109 0.027695979285786626 0.020427360238390466 102.09990421634615 -2.009025334659566 -0.09745661807743422 ALSTGEKGFGYK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALSTGEKGFGYK 12 1 P62937;F8WE65;C9J5S7 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 139.46 5.3673e-05 942880000.0 583330.0 675560.0 624310.0 625160.0 670150.0 860110.0 920240.0 776120.0 1095400.0 829100.0 False True 580189.4160940563 698045.6062153558 712207.4214002007 704305.1919009018 755489.6302097522 800652.620181157 875724.4755418152 834038.0154575041 825453.3476079913 776186.1281717771 0.7474874840402392 0.8993275979558242 0.9175729835287428 0.907392140026796 0.9733356508048228 1.0315214239489285 1.1282403070053442 1.074533523836597 1.063473460357064 1.0 19.56604312426126 3.8555406275599093 0.5884251324402386 1.080895310517967 0.7423365707516847 0.8067254911512504 0.04619073632604703 0.6573999432459356 0.3416719181332392 0.028264773413542336 0.13474408780736813 7170.354499720113 -3.8555406275599093 -0.33855873976628237 ALSTGEKGFGYKGSCFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSTGEKGFGYKGSCFHR 18 2 P62937;F8WE65;C9J5S7 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ; 178.22 5.3985e-14 1910730000.0 728410.0 798410.0 1300500.0 1210380.0 1160800.0 1798630.0 1494370.0 1114700.0 1265970.0 1435130.0 False True 724488.3214939593 824984.5942009634 1483599.0958513601 1363613.9838969437 1308620.9993993575 1674294.941619598 1422081.6140522296 1197884.5743319073 953988.6566288914 1343538.774723393 0.5392388631605489 0.614038544865079 1.1042473233843235 1.014942039300417 0.9740105935303398 1.2461828219020334 1.0584596744109651 0.8915891352510665 0.7100566612417256 1.0 20.35760652766366 4.293680576650871 6.630331583689201 1.0014753249933104 0.5670035363784308 0.6228310563864776 0.13187539103722656 0.13339916150589978 12.087000562055621 0.0340786965459647 0.09395691822401005 19664.39442581582 -4.293680576650871 -0.43447178861487956 ALSYAS(ph)LDKEDLLSPINQNTLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALSYASLDKEDLLSPINQNTLQR 23 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 ALSYAS(1)LDKEDLLSPINQNTLQR;ALSYAS(1)LDKEDLLSPINQNTLQR 274.46 6.468199999999998e-52 1314410000.0 688480.0 543160.0 537390.0 533920.0 578970.0 720930.0 695070.0 603830.0 913070.0 683010.0 True False 684773.3001773197 561238.7522528461 613049.8409223857 601514.2172559494 652698.3976759532 671093.8059866775 661446.8086747471 648890.8607866123 688056.1330111636 639419.7170457189 1.0709292846663312 0.8777313825196248 0.9587596762809117 0.9407189068787204 1.020766767549154 1.0495356775785722 1.0344485649125725 1.0148120921022774 1.076063366000281 1.0 19.286403705958282 3.158554977179833 5.300819852625852 1.0339924153338562 0.9558965800870346 0.3392971920541292 0.04814353565450855 0.20766797628176387 10.029067128012397 0.01315618870902182 0.015968291267899254 1440.6383685886653 -3.158554977179833 -0.07809583524682162 ALTAHLYSLLQTQHALGDAFADLSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALTAHLYSLLQTQHALGDAFADLSQK 26 0 A0A087X1E4;P53365;P53365-2;P53365-3;E9PRV8 A0A087X1E4 ARFIP2 Arfaptin-2 0 ; 140.45 1.8252e-07 825680000.0 256530.0 288200.0 288620.0 260680.0 265550.0 360770.0 340110.0 304060.0 437930.0 329610.0 False True 255148.87098316243 297792.56277942134 329255.18726998824 293682.0612718774 299366.21846183663 335830.819061232 323657.57995362795 326750.50118539506 330008.0194613539 308574.0076066814 0.8268644302289505 0.9650604245286841 1.06702178133444 0.9517394661646753 0.9701601919868076 1.088331521069957 1.0488815388695103 1.0589048109388464 1.0694614948968515 1.0 18.23525701762788 5.632508290328848 0.9408690966084247 1.03891991569402 3.5945846726970627e-20 0.6656033526699006 0.04372699930655418 5.72914968082005 1.1489024569797086 0.014099851830238755 9.05128054900227 429050.3793839044 -5.632508290328848 -1.03891991569402 ALTHIDHSLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALTHIDHSLSR 11 0 P56192;P56192-2;F5H2V6 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ; 244.27 4.1867e-16 2228400000.0 491780.0 615580.0 607850.0 624290.0 583040.0 569500.0 574510.0 262303.0 697600.0 512960.0 False True 489132.3111218949 636069.2081740322 693429.9964730857 703325.0499901046 657286.6880511735 530131.8054588 546718.7564586716 281877.38180764584 525685.8273610871 480222.45363284874 1.0185536045256605 1.3245303366433905 1.4439766221411288 1.464581767615197 1.3687129435095056 1.1039296506200211 1.1384697910786619 0.5869725159147879 1.0946714869001046 1.0 18.873343335288432 2.254019940675434 2.00234822718747 0.8604374215063677 1.3313885858049843 0.4796110142831823 0.1804283196851575 0.23998013626177883 1.949155267844335 0.08656187861151972 0.05757468167143461 179.48160341019172 -2.254019940675434 0.4709511642986166 ALTHNGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ALTHNGTPR 9 0 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR 138.63 0.00048311 2490120000.0 1875870.0 1991980.0 1905990.0 2113610.0 2039650.0 2121390.0 2061790.0 1823840.0 2455320.0 2106260.0 True False 1865770.5243487514 2058281.8501226613 2174336.8248379347 2381192.8092866815 2299387.3375472943 1974743.3025149151 1962053.3408973315 1959944.2020718642 1850239.2856023838 1971836.6835400916 0.9462094604098161 1.0438399220909982 1.1026962034879526 1.2076014353337121 1.1661144945427946 1.0014740667921875 0.9950384619961549 0.9939688303968072 0.9383329263763363 1.0 20.911108635439632 2.592876085702121 6.67381253605427 0.9850063591954091 1.0971786500326204 0.39126964748476833 0.06725042697884764 0.28206164177729515 14.58009047266281 0.024045754292349793 0.022601110093041644 391.63012000012213 -2.592876085702121 0.11217229083721125 ALTLDQWLEQHKGDFNLL ddPTM_BT-474_Trastuzumab_2h_R1 2 ALTLDQWLEQHKGDFNLL 18 1 I3L1Y8;Q9HBL8;I3L3Z0 I3L1Y8 NMRAL1 NmrA-like family domain-containing protein 1 0 ; 201.12 1.3114000000000002e-15 433770000.0 654080.0 686620.0 642510.0 625320.0 646850.0 762150.0 800080.0 645100.0 1031910.0 797150.0 False True 650558.5059551194 709473.7316294448 732969.8232029651 704485.4478844951 729222.5133196722 709464.364408121 761377.073797592 693240.6377514258 777609.6073855773 746275.2045255486 0.8717407492705295 0.9506864589993972 0.9821709454610078 0.9440022174291296 0.9771495942750532 0.9506739070329552 1.0202363272697028 0.9289343040576566 1.0419877314293857 1.0 19.509348226884555 5.870618883675313 1.049496851010255 0.9773632298058572 1.1195037238375007e-10 0.49827443152775597 0.03281601813057302 13.239679730444225 1.8438767220245305 0.008880490749373861 24.882092566084243 742367.3854110466 -5.870618883675313 -0.9773632296939069 ALTNLPHTDFTLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALTNLPHTDFTLCK 14 0 Q9UBQ5;A0A087WVB9;K7ERF1;Q9UBQ5-2;K7ES31;K7EQM4 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K 0 ; 229.23 1.3618e-12 389330000.0 703890.0 730740.0 718930.0 686860.0 647790.0 806170.0 728500.0 679540.0 1030600.0 817160.0 False True 700100.3344495306 755062.2391583425 820149.0949484186 773816.4055746575 730282.2167478557 750441.3654200537 693259.6718597469 730250.7254342017 776622.4393324767 765008.1491941266 0.9151540871649916 0.986998948904974 1.072078899829209 1.0115139379754448 0.9546071078029014 0.9809586554216216 0.906212139818431 0.9545659431255222 1.015181916886225 1.0 19.545115590528813 3.235830877751249 24.99307268024292 0.9618758613916139 1.0011653929512019 0.06794597320730444 0.04538536140289827 146.66131112855547 1342810.513339821 0.013412107988774655 0.01672784157130127 1721.1981782750001 -3.235830877751249 0.03928953155958803 ALTQPS(ph)PVSTPSSVQFFLQEDDSADR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALTQPSPVSTPSSVQFFLQEDDSADR 26 0 P04920-2;P04920-3;P04920;C9J9M9 P04920-2 SLC4A2 Anion exchange protein 2 1 ALT(0.003)QPS(0.989)PVS(0.006)T(0.002)PSSVQFFLQEDDSADR;ALT(0.008)QPS(0.99)PVS(0.001)TPSSVQFFLQEDDSADR;ALT(0.027)QPS(0.944)PVS(0.024)T(0.004)PSSVQFFLQEDDSADR 181.06 1.3291e-17 217972000.0 137085.0 199865.0 187964.0 184732.0 207297.0 205060.0 175053.0 172268.0 168418.0 159534.0 True False 136346.94959157522 206517.3857040562 214427.69738762383 208119.0522590011 233695.04420441846 190884.68485931805 166585.01762260008 185123.51291917945 126913.64058557841 149352.40353607095 0.9129210268025267 1.382752341539512 1.4357164150748747 1.3934764177312826 1.5647223524459546 1.2780824435357439 1.1153822347583926 1.239508093182238 0.8497596127063786 1.0 17.18836092963937 1.6048828674648616 1.2759191900256492 0.9428168471583027 1.342862609984697 0.39439939846878047 0.1768333220572852 0.4230895696556873 1.3171530895161698 0.15326145628816007 0.05512020888748442 40.260843311479256 -1.6048828674648616 0.40004576282639426 ALTQTGGPHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALTQTGGPHVK 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 128.36 0.00026738 593410000.0 187720.0 288950.0 255010.0 288670.0 295830.0 258670.0 254510.0 196890.0 286790.0 247970.0 False True 186709.33637765283 298567.5260760364 290913.19141334516 325215.59240199777 333502.19697821524 240788.7517436836 242198.37897738384 211582.93158716167 216114.44728911444 232144.3423022022 0.8042812266111455 1.2861288072546064 1.2531564996515767 1.400919743194244 1.4366156576155833 1.0372372178264342 1.0433094193701842 0.9114283358744364 0.9309485863229858 1.0 17.824662595177617 2.547557693539212 6.404597069811521 0.9701597192043395 1.2493546001765412 0.37415053707286894 0.16397516194104936 0.24819266367798293 18.299687683788896 0.05492997688820036 0.05136498073118467 352.8236541112458 -2.547557693539212 0.2791948809722017 ALTVPELTQQMFDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALTVPELTQQMFDAK 15 0 Q13509;A0A0B4J269;Q13509-2;P68371;P04350 Q13509;P68371;P04350 TUBB3;TUBB4B;TUBB4A Tubulin beta-3 chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 139.32 1.8248e-05 69859000.0 176190.0 153920.0 129160.0 144120.0 147610.0 173920.0 182750.0 142600.0 231480.0 201450.0 False True 175241.4126165492 159043.13415339528 147344.60532115467 162365.57722304348 166407.2585469843 161897.31976364282 173909.68432720462 153241.5361081278 174434.85567308546 188593.28852997808 0.9292028045244753 0.8433127996923092 0.781282337614752 0.8609297737402488 0.8823604479463373 0.8584468780706809 0.9221414276338927 0.8125503155631602 0.9249261043844514 1.0 17.524918810169847 0.9903819271130669 5.857815397300475 0.9999407708671095 0.8595895784273601 0.516851054129875 0.042318646918324335 0.1005999249845834 16.379049838998924 0.040007317556774856 0.010067525788681761 9.780970005953257 -0.9903819271130669 -0.14035119243974947 ALTVPELTQQVFDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALTVPELTQQVFDAK 15 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 ; 128.68 0.00016416 387620000.0 308694.0 321435.0 273947.0 272460.0 253041.0 348174.0 349902.0 355279.0 472546.0 401957.0 False True 307032.02580312756 332133.7696634395 312516.3564099906 306953.4080640468 285264.2714584884 324105.550893437 332975.9035045561 381791.72305020766 356093.37009198946 376303.76012729865 0.8159153809657991 0.8826214480319914 0.8304895925150213 0.815706460015729 0.7580691496730919 0.8612870378541961 0.8848593577484176 1.0145838641661526 0.9462923516138337 1.0 18.521538179707353 1.991986013823951 2.4604908329360127 0.987501477740605 0.8254119301684328 0.8054727040194147 0.03496225323223448 0.12310378693244678 1.394207232464061 0.018947697774004874 0.010401099690505997 98.17163269644183 -1.991986013823951 -0.1620895475721722 ALVADSHPESER ddPTM_BT-474_Trastuzumab_2h_R1 3 ALVADSHPESER 12 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;; 156.36 6.7794e-05 2042480000.0 1131400.0 1586710.0 1407110.0 1544000.0 1410840.0 1482540.0 1436670.0 1229950.0 1534900.0 1522170.0 False True 1125308.668110358 1639522.6831635516 1605218.857180627 1739470.2416901146 1590502.1112961662 1380055.4993237753 1367172.7834876345 1321735.1145595505 1156644.4616062667 1425023.8074046967 0.7896771003144218 1.1505230120677827 1.1264505539062593 1.2206604778471026 1.1161231854735427 0.9684438197823381 0.9594034684778898 0.9275179177299085 0.8116667634576492 1.0 20.442554591435083 2.5738046230418603 3.1188550408648066 0.922782115447365 1.0945607053928978 0.289418964400471 0.11555887870686862 0.31596723963040874 5.903743594929575 0.040644390199429524 0.03706345821196789 374.8043503030154 -2.5738046230418603 0.17177858994553286 ALVAT(ph)PGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALVATPGKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 ALVAT(1)PGKK;ALVAT(1)PGKK 94.82 0.0049597 1137410000.0 9212400.0 1840420.0 1561310.0 2863400.0 1286810.0 2231400.0 2298100.0 3403000.0 6730400.0 3587200.0 True False 9162801.461993866 1901677.2671426171 1781128.8768502 3225906.1464089877 1450677.6259795723 2077148.5701505993 2186932.123405468 3656949.140083861 5071783.102739472 3358261.8248435673 2.728435702722697 0.5662683156728555 0.5303722490229502 0.9605880406776369 0.43197275901712845 0.6185189477438543 0.6512095356077064 1.0889410447484116 1.5102405253871838 1.0 21.679283282826674 1.5075098126330004 5.931657353340684 1.270396207034989 0.8682380184296332 0.03515096880732227 0.6407410983441005 0.4110438257482088 32.3254635486322 0.35723104504346487 0.15889630934058946 32.174352279651515 -1.5075098126330004 -0.4021581886053558 ALVATPGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALVATPGKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 75.294 0.043552 0.0 884560.0 817600.0 697070.0 588820.0 672670.0 981410.0 858260.0 880980.0 1361700.0 939830.0 False True 879797.6272438552 844813.3217503623 795211.3969589444 663364.5516269254 758330.5372725416 913567.4366906431 816742.6849284095 946723.2011257949 1026127.2808451722 879849.2447710546 0.9999413336688004 0.9601796293752471 0.9038041479093003 0.7539525158080227 0.8618868991242546 1.0383226923475535 0.9282757128932173 1.0760061530451634 1.1662535223431152 1.0 19.746896824944645 2.001987313915601 1.3961126539453321 1.0911300612651664 0.9013459774691885 0.4355242468248086 0.08257249548487486 0.3987503025155729 1.4471611789883738 0.060350001345086654 0.02855345704527991 100.45864450872942 -2.001987313915601 -0.1897840837959779 ALVDHENVISCPHLGASTK ddPTM_BT-474_Trastuzumab_2h_R1 6 ALVDHENVISCPHLGASTK 19 0 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YF78 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 ;;;;; 284.36 3.8571e-40 13898080000.0 11152010.0 12637610.0 12142800.0 12056660.0 12421770.0 13920140.0 13441020.0 11843920.0 17113730.0 14275080.0 False True 11091968.81726478 13058245.209253421 13852400.692890337 13583031.919802796 14003608.779900923 12957873.486284921 12790826.512917357 12727773.452607136 12896280.55373317 13364032.172889138 0.8299866891795153 0.9771186600211836 1.036543500770069 1.0163872507997946 1.0478580565160012 0.9696080732708674 0.9571083298396564 0.9523902133689304 0.9649992148249337 1.0 23.671852025179618 4.7322917222141365 4.762378500549724 0.9904331076701088 0.8215915825667631 0.7054642501279045 0.031377527301043664 0.10801030641712603 6.956011213772288 0.008722648801623205 0.06014503964646291 53987.314175368214 -4.7322917222141365 -0.1688415251033457 ALVEFESNPEETREPGS(ph)PPSVQR ddPTM_BT-474_Trastuzumab_2h_R1 8 ALVEFESNPEETREPGSPPSVQR 23 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 ALVEFESNPEETREPGS(0.996)PPS(0.004)VQR;ALVEFESNPEETREPGS(0.996)PPS(0.004)VQR;ALVEFESNPEETREPGS(0.998)PPS(0.002)VQR;ALVEFESNPEETREPGS(0.999)PPS(0.001)VQR;ALVEFESNPEETREPGS(0.999)PPS(0.001)VQR;ALVEFESNPEETREPGS(0.999)PPSVQR;ALVEFESNPEET(0.323)REPGS(0.669)PPS(0.008)VQR;ALVEFESNPEET(0.247)REPGS(0.719)PPS(0.034)VQR 258.2 7.4389e-44 43932650000.0 2990649.0 3661330.0 3176040.0 3645110.0 3948190.0 3515430.0 3455953.0 3499850.0 4177550.0 3523410.0 True False 2974547.6780763404 3783195.1557292794 3623198.825365436 4106580.552258455 4450968.593744444 3272416.598532098 3288775.3503674767 3761026.5788782006 3148048.7788020447 3298542.9572569346 0.9017762438206873 1.1469291759278408 1.0984240230657736 1.2449680375463366 1.349374148349993 0.9920794244418258 0.9970388116765407 1.1402084579810556 0.9543755590256006 1.0 21.65339746272328 ALVLDCHYPEDEVGQEDEAESDIFSIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 0 Q07021;I3L3Q7;I3L3B0 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial 0 ; 360.31 9.359899999999995e-111 805470000.0 329550.0 379240.0 358380.0 325250.0 434770.0 613690.0 281190.0 275590.0 408910.0 398860.0 False True 327775.73941644706 391862.77414457855 408836.7889051982 366426.6166513659 490135.38241631567 571267.0547708706 267587.765449886 296155.92521766445 308139.6096132771 373404.4133187741 0.8778036030780012 1.0494326263092306 1.094890082501986 0.9813130310769753 1.3126127194374877 1.5298883312425713 0.7166165045335102 0.793123794615778 0.8252168389617274 1.0 18.51037945351534 2.1820677808471465 24.999988824770963 0.8104272614406969 1.135282042510055 0.40350799371140134 0.18204990328181972 85.38730315049611 37786.03885813969 0.07154237566271106 0.05283757347235055 152.07848618816814 -2.1820677808471465 0.32485478106935806 ALVS(ph)SESYLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALVSSESYLQR 11 0 A0A2R8YF49;H0Y895;Q12774-2;C9J591;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 ALVS(0.945)S(0.052)ES(0.003)YLQR 116.03 0.0010954 185990000.0 37182.0 42949.0 49056.0 45395.0 45107.0 43859.0 37165.0 42027.0 45603.0 47149.0 True False 36981.816243308574 44378.531501781246 55962.65839760421 51142.002345545814 50851.109079864655 40827.13056298072 35367.186965912784 45163.268148781826 34364.75169889282 44139.91045371025 0.8378317006803083 1.005406015681007 1.2678471211737627 1.1586340302882738 1.1520437752856902 0.9249481963901205 0.8012518965801377 1.0231844080459742 0.7785414910374889 1.0 15.429796082385844 2.681775160041479 7.197358102494144 0.9071848166189237 1.0941467324664813 0.3300033814352703 0.12702142119612791 0.3243293092434705 35.76302003976858 0.04263221141344624 0.04028109985399926 480.5904760301653 -2.681775160041479 0.1869619158475576 ALVSEEGEGKNPVDYIQGLLDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALVSEEGEGKNPVDYIQGLLDLK 23 1 Q13618;Q13618-2;Q13618-3 Q13618 CUL3 Cullin-3 0 193.4 5.6869e-18 62083000.0 68207.0 66273.0 64602.0 51954.0 59034.0 78821.0 77582.0 70138.0 117790.0 73754.0 False True 67839.78109051014 68478.85674212544 73697.40006934998 58531.371073036375 66551.6299780684 73372.28979467617 73829.06226797916 75372.05371354744 88762.23280513537 69046.95657602386 0.982516601087485 0.9917722682929129 1.0673518967951292 0.8477038522123803 0.9638604404640487 1.062643357986241 1.0692587469324586 1.091605733998708 1.2855343263016101 1.0 16.07529020490254 2.267286662481386 1.5371557677140915 1.1316391466716056 0.9724975755763277 0.3887396301604401 0.08381653937094435 0.4030125883388546 1.8904043615072323 0.04559980129130544 0.02821496832247282 185.04896589569043 -2.267286662481386 -0.15914157109527793 ALVTGYFMQVAHLER ddPTM_BT-474_Trastuzumab_2h_R1 3 ALVTGYFMQVAHLER 15 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;; 196.22 9.0404e-09 1402110100.0 764519.0 1045259.0 985239.0 909719.0 786262.0 823233.0 970281.0 720804.0 1153587.0 915614.0 False True 760402.9146500466 1080049.8139425914 1123952.087349095 1024889.3321244105 886387.8051600093 766324.8403920361 923344.801196632 774594.0546485473 869300.9411238441 857178.7306234153 0.8870996065161523 1.2600053820246855 1.3112225574375354 1.195654179822009 1.0340758274710697 0.8940082307393439 1.0771905183940984 0.9036552436213563 1.0141419870411537 1.0 19.709236526965483 3.1247038135289724 4.219502686509151 0.973754118789071 1.1806410610522795 0.3595570580547749 0.11597840283318059 0.21624561949332957 6.889691328180937 0.0338634359120914 0.041244301136328855 1332.6122878613362 -3.1247038135289724 0.20688694226320847 ALVVPEPEPDS(ph)DS(ph)NQER ddPTM_BT-474_Trastuzumab_2h_R1 2 ALVVPEPEPDSDSNQER 17 0 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 2 ALVVPEPEPDS(1)DS(1)NQER;ALVVPEPEPDS(1)DS(1)NQER 131.51 3.1851e-05 0.0 101764.0 124989.0 113323.0 117375.0 111123.0 120482.0 117392.0 106882.0 121227.0 123320.0 True False 101216.11393104332 129149.18330755395 129277.89337882625 132234.66296527008 125273.85537237678 112153.36292412158 111713.30047901065 114858.07757579896 91352.23020857565 115449.61202043627 0.8767124649420788 1.1186627745850948 1.1197776338645657 1.1453885435480078 1.0850955077285274 0.9714485909599142 0.9676368635975646 0.9948762543737903 0.7912736007497797 1.0 16.81690379924106 2.6564155076449256 3.6921015695161112 0.9474746014965322 1.0792308239126933 0.3283525015922274 0.08863163137131679 0.28743117817384767 7.477899716192595 0.029674090097518077 0.0281325676801796 453.33109325540863 -2.6564155076449256 0.13175622241616114 ALVVPEPEPDS(ph)DSNQER ddPTM_BT-474_Trastuzumab_2h_R1 2 ALVVPEPEPDSDSNQER 17 0 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 1 ALVVPEPEPDS(1)DSNQER;ALVVPEPEPDS(1)DSNQER 190.82 2.9072000000000006e-10 186370000.0 212380.0 232150.0 219068.0 240318.0 216932.0 222790.0 217948.0 203160.0 238930.0 222030.0 True False 211236.56967763603 239876.97241236153 249910.87022680938 270742.2341596407 244557.00434329946 207389.0516912487 207405.02259778723 218320.8308255767 180048.90299797076 207859.85531055328 1.0162451492234408 1.154032230292728 1.2023046482613478 1.3025229607474609 1.176547554013827 0.9977349949628264 0.9978118299366344 1.0503270605061963 0.8662033499877524 1.0 17.66525162687632 2.735670967353204 6.8689033099861385 0.9917839558913769 1.1788502475882883 0.5844844856001622 0.07887450327332932 0.10537975782253987 32.19586375005493 0.026002658400278465 0.02586744747317621 544.0902798884325 -2.735670967353204 0.18706629169691136 ALVVPEPEPDSDS(ph)NQER ddPTM_BT-474_Trastuzumab_2h_R1 5 ALVVPEPEPDSDSNQER 17 0 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 1 ALVVPEPEPDS(0.379)DS(0.621)NQER;ALVVPEPEPDSDS(1)NQER;ALVVPEPEPDS(0.002)DS(0.998)NQER;ALVVPEPEPDSDS(1)NQER;ALVVPEPEPDS(0.03)DS(0.97)NQER 308.0 5.098999999999998e-58 3561703000.0 1555184.0 1863991.0 1703872.0 1840318.0 1824656.0 1793242.0 1781637.0 1661218.0 1930179.0 1847830.0 True False 1546811.0621411877 1926032.8136286458 1943762.3672790823 2073302.0701079436 2057015.1260165728 1669279.401377612 1695452.4117957219 1785186.5226540822 1454512.2485235021 1729899.9073931468 0.8941621740833187 1.113378181822704 1.1236270717004737 1.1985098451344984 1.1890948818630602 0.9649572176075284 0.9800870007274958 1.0319594301523773 0.8408071717370995 1.0 20.722257134767062 2.718326926257227 24.35700178772038 0.9724145117087679 1.11065730839889 0.36980565640663954 0.09091634325498393 672.1437917463253 809114.8847115838 0.03000984857200681 0.028328279140130863 522.7895841158137 -2.718326926257227 0.13824279669012207 ALVVPEPEPDSDS(ph)NQERK ddPTM_BT-474_Trastuzumab_2h_R1 2 ALVVPEPEPDSDSNQERK 18 1 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 1 ALVVPEPEPDS(0.042)DS(0.958)NQERK;ALVVPEPEPDS(0.019)DS(0.981)NQERK 219.22 4.561100000000001e-19 526340000.0 629300.0 489820.0 455840.0 441430.0 454350.0 641790.0 559570.0 562900.0 781730.0 642780.0 True False 625911.9187218023 506123.36259755783 520018.30976769194 497314.9927391623 512208.7793565628 597424.5679111567 532501.4613350141 604906.4563482825 589083.11614533 601757.2300883555 1.0401402549494922 0.8410756652200825 0.8641662846183636 0.8264379186040556 0.8511884091219903 0.9927999831816517 0.88491078247091 1.0052333833354434 0.9789381609238587 1.0 19.198822045162263 2.0603153923487443 1.1391608495658048 0.9973405391378514 0.8831588252533701 0.28442824027558733 0.06564315608201235 0.5915639913357394 1.4263424556638689 0.047896055028041715 0.02330893012617753 114.89877338397807 -2.0603153923487443 -0.11418171388448128 ALWEETSFQLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALWEETSFQLDR 12 0 O15067;H0YGH1 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 120.09 0.0010401 41321000.0 30331.0 29943.0 28954.0 33223.0 30842.0 30977.0 28620.0 31173.0 38418.0 28676.0 False True 30167.701266090902 30939.634654074285 33030.47152732048 37429.02839356906 34769.54588514387 28835.632902014517 27235.541260982758 33499.28755328658 28950.39867482544 26845.87312924122 1.1237370124211554 1.1524912788317558 1.2303742690098178 1.3942190746927279 1.295154220455284 1.074117901220579 1.0145150105517373 1.247837512753433 1.0783928887487706 1.0 14.712412707105441 2.732925426951814 24.826765203107847 1.104775343477968 1.2425006776984437 0.3959486466568597 0.09453672399440864 545.1571143662052 2401773.337067293 0.03290296199824807 0.03182582659152844 540.6614775655879 -2.732925426951814 0.13772533422047584 ALWFER ddPTM_BT-474_Trastuzumab_2h_R1 2 ALWFER 6 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 ; 121.68 0.045473 1186940000.0 664510.0 862520.0 992130.0 699750.0 466280.0 593590.0 752910.0 520960.0 1059780.0 643140.0 False True 660932.351994001 891228.4567956487 1131813.2802514483 788338.2782530163 525657.994141914 552556.5204605606 716488.8669044909 559836.6805812789 798611.4193244448 602094.2545801433 1.097722403039516 1.4802141857625375 1.8797941877732955 1.3093270235616947 0.8730493442566889 0.9177242869488488 1.189994525697838 0.9298156830472801 1.3263893705169771 1.0 19.199629825161466 3.4532700577854816 7.344290035589255 1.0370715232144658 1.5034727828164305 0.4673196949142454 0.21634860233965436 0.1406621140682397 30.571653726120807 0.059619764829696574 0.082097910213127 2839.6842833454384 -3.4532700577854816 0.46640125960196466 ALWFQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ALWFQGR 7 0 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ; 140.01 0.0061723 996780000.0 1282360.0 1378200.0 1195960.0 926330.0 741770.0 1070700.0 901740.0 811790.0 1706480.0 1065320.0 False True 1275455.916243591 1424072.5538605063 1364340.7725293275 1043603.2830212464 836230.0126847535 996685.0291566952 858119.391218678 872369.891986094 1285940.869660474 997330.3655336625 1.2788700317583392 1.427884483491584 1.3679928132933976 1.0463967799304132 0.8384684168693635 0.9993529361992082 0.860416388464725 0.8747050346945936 1.2893830510939859 1.0 19.927711950744104 3.6689855748367823 3.8446186900595576 0.9568614475142017 1.3681826846201572 0.6480061498254721 0.1253966617844025 0.1276522642174409 3.694908224372733 0.03348224597121949 0.0551761832891893 4666.43880403022 -3.6689855748367823 0.4113212371059556 ALYDTFSAFGNILSCK ddPTM_BT-474_Trastuzumab_2h_R1 1 ALYDTFSAFGNILSCK 16 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E5RGH3;B1ANR1;E5RJB9;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YEQ8 P11940-2;B1ANR0 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 209.21 2.9908e-11 54153000.0 42540.0 51890.0 49270.0 39406.0 44913.0 52175.0 47913.0 45569.0 60614.0 51256.0 False True 42310.9693666383 53617.127281832596 56206.78773748289 44394.79555961179 50632.404329792735 48568.26505673907 45595.26514456558 48969.59017469341 45676.49188598757 47984.79819753066 0.8817577848814557 1.1173773631623145 1.1713457146595927 0.9251845840188692 1.055175935540317 1.012159410503438 0.9502022902518312 1.020522999244653 0.9518950501356515 1.0 15.550289805410783 3.7151103065898106 24.99537823180602 0.9918987411275038 1.0628820450662833 0.13866160902561986 0.07786479399660189 1415.7156869164864 1508991.815744426 0.020181635533643508 0.0312858355763054 5189.318258469346 -3.7151103065898106 0.0709833039387795 ALYDYAGQEADELS(ph)FR ddPTM_BT-474_Trastuzumab_2h_R1 3 ALYDYAGQEADELSFR 16 0 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 ALYDYAGQEADELS(1)FR;ALYDYAGQEADELS(1)FR;ALYDYAGQEADELS(1)FR 230.07 2.727e-15 78309000.0 140792.0 123689.0 111138.0 124950.0 118281.0 130886.0 133192.0 119897.0 146423.0 136045.0 True False 140033.99151546176 127805.91359342042 126785.26437118671 140768.65718858782 133343.38424358683 121838.15889250308 126748.99411714937 128844.32296462967 110339.0136176783 127362.4916260157 1.0994916142709767 1.0034815742197223 0.9954678394913634 1.105259919081496 1.0469596075046435 0.9566251204496364 0.9951830597765958 1.011634754625916 0.8663383717529274 1.0 16.958580939530687 2.7471720765726677 23.10836425113996 0.972844743786483 1.0475661793724926 0.4106888080586798 0.05003062434208293 259.85433932808087 697303.0568695404 0.01540027974556215 0.01607021651563348 558.6915161717375 -2.7471720765726677 0.07472143558600963 ALYDYAGQEADELSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALYDYAGQEADELSFR 16 0 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 0 145.71 2.7778e-06 87697000.0 108650.0 84472.0 75750.0 85194.0 67556.0 81088.0 78656.0 64596.0 140660.0 73409.0 False True 108065.0404721497 87283.59945559771 86414.94156919686 95979.55166486248 76158.85616421698 75482.57742062019 74851.10878490075 69416.48153184177 105996.22774743474 68723.9747713932 1.5724503833141572 1.2700604082627955 1.257420599676485 1.3965948853239871 1.1081846825297217 1.0983441756928225 1.0891556990684712 1.0100766401063408 1.5423471663277013 1.0 16.06852585923225 7.999999999517383 0.466317498128606 1.1290741087171319 11.588934061232209 0.356769204984523 0.16000585073155973 99.22183244595186 1.1506196384228369 0.08982294786847786 998.0077639958284 99999999.88887341 -7.999999999517383 10.459859952515076 ALYESELADAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ALYESELADAR 11 0 Q03252 Q03252 LMNB2 Lamin-B2 0 119.68 0.0020061 0.0 88323.0 96876.0 86305.0 92877.0 98114.0 109860.0 94920.0 90572.0 111290.0 104210.0 False True 87847.47878160774 100100.45909722142 98455.99382349207 104635.21867710663 110608.23633276085 102265.63678262307 90328.35697038718 97330.9425552971 83864.07070959773 97559.2285813304 0.9004527819566917 1.026048079231915 1.0091920083338306 1.0725301972829493 1.133754724603548 1.048241547926644 0.9258822387580156 0.9976600263311532 0.8596221180622017 1.0 16.573990730075007 2.2439344617068837 24.997385452401655 0.9504703061084484 1.0369174190437747 0.2849550104888303 0.06619776479231002 176.45864895845125 820831.7414240239 0.023999862691668778 0.01954063240178676 175.36158480952494 -2.2439344617068837 0.08644711293532625 ALYETELADAR ddPTM_BT-474_Trastuzumab_2h_R1 5 ALYETELADAR 11 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 ;;;; 240.13 2.6344e-15 1194220000.0 942420.0 1146700.0 1013620.0 1022300.0 1108880.0 1129520.0 1042130.0 1006540.0 1288540.0 1082450.0 False True 937346.1154327044 1184867.216305213 1156328.8854570203 1151723.0751812195 1250089.2951533087 1051438.941004082 991718.1905767971 1081653.1259065575 970996.5825513976 1013367.1142679314 0.9249817783063293 1.1692378799574281 1.1410759922798226 1.1365309362868343 1.2335996279654171 1.0375696292095034 0.9786366427464209 1.0673852651000588 0.9581883691310203 1.0 19.95072548579935 2.499295774679239 24.203040966394493 1.0116636494439148 1.1267146507197865 0.34412756458652705 0.07837264238064655 580.619318415555 633734.068356407 0.024864414489158732 0.023247346549642375 315.7154059662001 -2.499295774679239 0.11505100127587164 AMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHR 40 1 O95865 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 ; 267.83 5.691799999999998e-64 2683900000.0 490580.0 557860.0 515650.0 574050.0 531890.0 529620.0 527560.0 404490.0 617990.0 602060.0 False True 487938.7717885617 576428.0328665092 588249.0378898528 646724.6711413279 599623.0387409761 493008.6159913782 502039.90732508944 434675.0977586023 465694.64514174074 563636.0153505015 0.8656983558531708 1.022695528971925 1.0436682927794199 1.1474154481401566 1.063847984178399 0.874693246287317 0.8907165150063946 0.771198230631689 0.8262329454801515 1.0 19.104404274706575 2.6710851824523494 4.9169123422907886 0.8504386422053617 1.0357041842541306 0.44304727121087706 0.08576509091507738 0.18212890555953973 8.640474834387915 0.028909786617527227 0.027405059424790098 468.90534414776806 -2.6710851824523494 0.18526554204876888 AMDDSSVTEHQK ddPTM_BT-474_Trastuzumab_2h_R1 3 AMDDSSVTEHQK 12 0 P43155-2;P43155;P43155-3;H0Y4Z7 P43155-2 CRAT Carnitine O-acetyltransferase 0 ;; 210.79 3.9456e-08 1635270000.0 1693890.0 1866160.0 1864570.0 1726290.0 1777380.0 2481720.0 1982180.0 1706160.0 2318860.0 1938480.0 False True 1684770.2844488714 1928274.007482458 2127085.248867029 1944838.1369994988 2003718.8076433786 2310164.537740501 1886294.380737066 1833482.322904932 1747408.0241320673 1814764.546783776 0.9283685244097988 1.0625477618569579 1.1720998476836924 1.0716751880822482 1.1041205379477341 1.2729830665001143 1.0394154900590598 1.0103141623271894 0.9628841533348876 1.0 20.7913509499295 2.0094295630604444 24.996023861754338 1.0003752658369869 1.1065927737884778 0.2660494612107839 0.082710705551378 280.76980898439393 744264.9710278779 0.03195303382186515 0.023568733598015323 102.19498001380519 -2.0094295630604444 0.10621750795149087 AMDNHS(ph)DS(ph)EEELAAFCPQLDDSTVAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AMDNHSDSEEELAAFCPQLDDSTVAR 26 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR 146.57 1.0872e-07 610495000.0 167049.0 190845.0 180824.0 169170.0 224591.0 228072.0 182012.0 166387.0 219885.0 204483.0 True False 166149.62674488866 197197.1604567612 206282.4474496163 190586.9046546093 253191.3325948498 212305.919463739 173207.38420663835 178803.64283606652 165697.28805804544 191432.71987329607 0.8679270025252654 1.0301120967579651 1.077571522705987 0.9955816580402421 1.322612627362919 1.1090367394051461 0.9047950858206447 0.9340286391710446 0.8655640904424061 1.0 17.546477912226095 2.2344324953725443 24.99265558954646 0.9214737318875401 1.0742910440682911 0.27740493061262217 0.11105979470450159 137.43635758049592 832063.0760350918 0.042373173030875955 0.032427784353222674 171.56650147476054 -2.2344324953725443 0.152817312180751 AMDSDWFAENYMGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AMDSDWFAENYMGR 14 0 P55084-2;P55084;B5MD38;F5GZQ3 P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase 0 ;; 219.92 1.1244000000000002e-11 744640000.0 289744.0 391170.0 411240.0 431850.0 441390.0 531890.0 354973.0 303489.0 314278.0 393110.0 False True 288184.05049758486 404189.85698274174 469139.01743784186 486522.16572142177 497598.4001765017 495121.69623438345 337801.5998614549 326136.89026591554 236828.3980094432 368021.383241597 0.7830633316988517 1.0982781854210928 1.2747602144896664 1.321994285864721 1.352091000239083 1.3453612175283527 0.9178857948036582 0.8861900561137087 0.6435180367059573 1.0 18.489430068437482 2.11333109607248 5.581625669324653 0.847867230501935 1.2069935894711854 0.46029396060301686 0.17800302662201484 0.19313655401915977 8.725706514907015 0.07176141779560774 0.05251613456959884 129.81685875385773 -2.11333109607248 0.3591263589692504 AMEDLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AMEDLGR 7 0 E7EPM6;P33121-2;P33121;P33121-3;B7Z3Z9;D6RER0 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 110.61 0.036694 0.0 425700.0 509320.0 462290.0 516080.0 522210.0 487430.0 496080.0 476100.0 547550.0 514450.0 False True 423408.0784997162 526272.4083095584 527376.4137032876 581415.6750851261 588710.3481188313 453735.11138680024 472082.7151903674 511628.99958681414 412613.6392940985 481617.36055719655 0.879137907341761 1.0927189329319424 1.0950112203039175 1.2072149442712574 1.222361144618491 0.9421070512530143 0.9802028619653614 1.062314279939777 0.8567250126048909 1.0 18.877527871389827 2.712178410918723 24.865596176732552 0.980563194604715 1.1046821091446404 0.2972160247429496 0.09967151723191835 996.453070423444 939169.7637216963 0.033421007032631844 0.03151736629079932 515.440347247583 -2.712178410918723 0.1241189145399254 AMEVDERPTEQYSDIGGLDK ddPTM_BT-474_Trastuzumab_2h_R1 7 AMEVDERPTEQYSDIGGLDK 20 1 P17980;E9PM69;R4GNH3;E9PN50;E9PMD8 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 ;;;;;; 231.39 9.3636e-26 4162150000.0 5538390.0 5309150.0 4653400.0 4589860.0 4541170.0 5890620.0 5774460.0 5446800.0 7384520.0 6027620.0 False True 5508571.923612973 5485861.848301046 5308558.271922119 5170935.805391056 5119461.081876624 5483415.304427954 5495127.309220632 5853267.87428998 5564703.993498415 5642932.131094885 0.9761896467367502 0.972165129910332 0.9407446605054439 0.9163561930679737 0.9072342113891962 0.9717315709349175 0.9738070885063834 1.0372741933286878 0.9861369699689633 1.0 22.428013567369728 2.1635166651543787 2.3750296555987833 1.0104519952723017 0.9433545746172395 0.5424822026128058 0.0247474618609381 0.21944505643123455 2.480114404694085 0.01242365281308969 0.007999875305901115 145.71916203784437 -2.1635166651543787 -0.06709742065506219 AMEVDIEERPK ddPTM_BT-474_Trastuzumab_2h_R1 4 AMEVDIEERPK 11 1 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1;Q9Y3C1-3;Q9Y3C1-2 D6RIC3 NOP16 Nucleolar protein 16 0 ;;; 174.84 9.6058e-06 1061830000.0 1326340.0 1431650.0 1372310.0 1376960.0 1369530.0 1658310.0 1469670.0 1432770.0 2174970.0 1713480.0 False True 1319199.132810227 1479301.6047992995 1565519.31966765 1551282.9948171119 1543931.5276597207 1543674.932941848 1398576.4474153914 1539690.5728586412 1638977.78660485 1604124.2394159667 0.8223796513981512 0.9221864294862143 0.9759339589791548 0.9670591321417266 0.9624762781602496 0.9623163187808151 0.8718629224907096 0.9598324961533 1.0217274612105935 1.0 20.613354452169418 4.6888259545592765 2.7656611375026365 0.9586384632314485 0.8046483097069395 0.5722584136814922 0.037032325638923565 0.2859915801694644 3.196097134920057 0.00931049844629298 0.09450008592142013 48845.65689760728 -4.6888259545592765 -0.15399015352450907 AMGIMNSFVNDIFER ddPTM_BT-474_Trastuzumab_2h_R1 9 AMGIMNSFVNDIFER 15 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L 0 ;;;;;;;; 303.71 3.6637e-44 33603339000.0 4161254.7 5552519.2 5306958.5 6065180.6 5157049.8 4922374.9 5130461.6 5108371.9 6744864.2 4723057.2 False True 4138850.967054064 5737331.445003263 6054132.127889802 6833031.842083029 5813769.52380106 4582102.709187147 4882281.572141427 5489584.550964912 5082682.794459822 4421627.64588329 0.9360469262732916 1.2975609672481003 1.3692089458338803 1.5453657316542364 1.3148482842543083 1.0362932105902825 1.1041819807434539 1.2415302668183588 1.1495049338204677 1.0 22.07614610735573 2.759396258974699 23.103119420633853 1.130812776201457 1.311179397924304 0.2559556463021986 0.15443343691583583 468.56571635115563 519556.3527382682 0.04930682271842577 0.05222457251892354 574.6405366060549 -2.759396258974699 0.180366621722847 AMGISIPS(ph)PVMENNFVDLTEDTEEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AMGISIPSPVMENNFVDLTEDTEEPK 26 0 Q9NPI1-2;Q9NPI1;I3L4V5 Q9NPI1-2 BRD7 Bromodomain-containing protein 7 1 AMGIS(0.006)IPS(0.919)PVMENNFVDLT(0.068)EDT(0.006)EEPK 52.79 0.070401 24358000.0 23919.0 20719.0 19956.0 19284.0 18928.0 21429.0 24026.0 22491.0 28959.0 25561.0 True False 23790.222761650737 21408.619390100008 22765.631339338503 21725.35242276694 21338.368604954405 19947.663668440087 22863.77059176701 24169.3926269839 21822.442480719197 23929.675096126917 0.9941724100341525 0.8946473073328542 0.9513556388830027 0.9078833011938071 0.8917115890306457 0.833595257282397 0.9554567916163464 1.0100175840204275 0.9119406090160923 1.0 14.546513188444726 2.0127289201815555 24.998063762576123 0.9770086576805812 0.9106144282723596 0.2765913918501086 0.045875377483502865 268.0641525431839 526443.6405901487 0.0170181937012596 0.012561109487067288 102.97431702324525 -2.0127289201815555 -0.0663942294082216 AMHGELQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AMHGELQK 8 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 73.665 0.041293 0.0 483650.0 485970.0 487900.0 452360.0 343410.0 522550.0 561400.0 205120.0 765870.0 441120.0 False True 481046.082138566 502145.2176749308 556592.0790971773 509628.72961848456 387141.2279494603 486427.34845038835 534242.9372437362 220427.0959782551 577131.6006322181 412967.34393816756 1.1648525947625332 1.2159441298344298 1.3477871489531488 1.2340654463341534 0.937462086608538 1.1778833256200998 1.2936687248658745 0.5337639869443503 1.3975235792945178 1.0 18.655668177144076 2.7838715945406887 0.8889555686563254 0.9746953648167381 1.2443243766856253 0.07320999410290341 0.23124399621669672 1.0873237503612259 1.8514856188301236 0.1388253069861156 0.13639778320947227 607.955223927979 -2.7838715945406887 0.2696290118688872 AMKDEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 AMKDEEK 7 1 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain 0 ;;; 101.64 0.0081244 2397990000.0 4089240.0 2788450.0 2477240.0 2189030.0 2032160.0 2340590.0 3450880.0 3342350.0 5735840.0 3616920.0 False True 4067223.986197279 2881261.872596377 2826013.859443921 2466160.9735536966 2290943.5304440064 2178790.5224562143 3283947.7507582195 3591773.129109407 4322319.0883182585 3386085.0689989994 1.2011582412486874 0.8509124295120385 0.8345962377960434 0.728322213795635 0.6765758933284152 0.6434541596145759 0.9698361629552993 1.0607450952705135 1.2764945357961814 1.0 21.69118678800407 1.8333210829751485 2.693175754915586 1.1333398274283366 0.8143675180448688 0.3925083628470718 0.15957973306253226 0.2649543222492202 3.530098765257335 0.0936978728926425 0.04614966275003639 68.12728517883149 -1.8333210829751485 -0.31897230938346777 AMKEYEEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 AMKEYEEEER 10 1 Q16543;K7EKQ2;K7EQA9;K7EL68;K7EIU0 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ; 107.97 0.002019 369900000.0 663420.0 823010.0 785060.0 911870.0 850940.0 970520.0 1105900.0 845700.0 1417110.0 1038940.0 False True 659848.2204328905 850403.3903299492 895589.6241361536 1027312.6485038627 959302.1650834695 903430.2367583397 1052403.3920517403 908810.4283775866 1067882.2288011315 972633.9597187163 0.6784137175548725 0.874330349904587 0.9207879441050528 1.0562171290019107 0.986293101837507 0.928849160294187 1.082013825998933 0.9343807290467347 1.0979281754771968 1.0 19.89153743889278 4.861875175879474 1.1350070854750771 1.0056215622629483 0.4546062352979728 0.7704718400644479 0.055683624829207135 0.9018610794188425 0.808491553660864 0.015181561859674085 0.631321570974755 72757.06574628969 -4.861875175879474 -0.5510153269649756 AMKPPGGESSNLFGS(ph)PEEATPSSRPNR ddPTM_BT-474_Trastuzumab_2h_R1 5 AMKPPGGESSNLFGSPEEATPSSRPNR 27 2 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BMM8;B4E1P3 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGES(0.011)S(0.011)NLFGS(0.978)PEEATPSSRPNR 233.0 3.1704999999999996e-45 1637020000.0 784026.0 801278.0 773068.0 815557.0 837718.0 1025956.0 935208.0 873418.0 1172110.0 1000796.0 True False 779804.8911294776 827948.0538472201 881909.254772486 918806.4325790565 944396.4217564033 955034.0765606484 889968.4161985028 938596.8862867376 883259.195969329 936924.3424554372 0.832302946773493 0.8836872053909729 0.9412811844137055 0.9806623554801679 1.0079751149184402 1.0193289183390735 0.9498829050231793 1.0017851428930933 0.9427220064050575 1.0 19.837573028008315 4.291019906901741 1.5409110644494683 0.9875827101561399 0.8252236323059546 0.8344940433116694 0.023125705140358215 0.19076825675429174 0.7402706989526123 0.006335994934316297 0.03676430802908577 19544.290395412405 -4.291019906901741 -0.16235907785018522 AMKPPGGESSNLFGSPEEATPSSRPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 AMKPPGGESSNLFGSPEEATPSSRPNR 27 2 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BMM8;B4E1P3 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 0 219.32 1.705e-34 265850000.0 145990.0 155470.0 169960.0 147690.0 169370.0 188640.0 159220.0 140860.0 211690.0 169330.0 False True 145204.00606101385 160644.7249664003 193888.89068119705 166387.53885700332 190938.26556535973 175599.76081079547 151517.92032053377 151371.68847258683 159521.83600067155 158523.21442929347 0.9159794455579853 1.013382964411519 1.2230946197957513 1.0496099227865305 1.2044814146165603 1.1077226855573175 0.9558090331817976 0.9548865698790353 1.0062995289047934 1.0 17.274334601171415 2.2389878918841872 24.99994216865673 0.9725790110920957 1.0924264672577697 0.27212185805940836 0.08459455173462002 14.395017110945819 842327.4143061554 0.03143608337317169 0.02481631162366991 173.37556600297702 -2.2389878918841872 0.11984745616567405 AMLDQLMGTS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 AMLDQLMGTSR 11 0 Q9Y383;V9GZ75;F8WEU3 Q9Y383 LUC7L2;C7orf55-LUC7L2 Putative RNA-binding protein Luc7-like 2 1 AMLDQLMGT(0.419)S(0.581)R;AMLDQLMGT(0.019)S(0.981)R;AMLDQLMGT(0.034)S(0.966)R;AMLDQLMGT(0.025)S(0.975)R;AMLDQLMGT(0.081)S(0.919)R 174.83 1.1064e-05 1453987000.0 2621490.0 2256040.0 2017060.0 2511440.0 2327980.0 2473200.0 1983000.0 2100750.0 3941750.0 3552800.0 True False 2607376.1891149227 2331130.927595023 2301044.5154001894 2829388.046496252 2624434.4539814927 2302233.5052865786 1887074.7142043612 2257518.6323923515 2970358.5292439256 3326057.2622948876 0.7839240227980636 0.7008691503965891 0.6918234816596429 0.8506732817173606 0.7890526972379018 0.6921809589345738 0.5673608616414294 0.6787371516372289 0.8930569424996792 1.0 21.66538157598836 1.0702998154798151 4.124835886809999 0.9970085519483 0.7149337880914477 0.6206067154660064 0.07318457482630676 0.13205270531125857 4.212757094376301 0.07748958204081798 0.01986209411608504 11.757089262686588 -1.0702998154798151 -0.28207476385685226 AMLDSGIYPPGS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 8 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK 309.56 4.2477e-56 2631320000.0 5004150.0 4348380.0 3960470.0 3819950.0 3890070.0 5176190.0 4978730.0 4617650.0 7105950.0 5017480.0 True False 4977208.212413331 4493113.199648776 4518069.750977654 4303555.2783317035 4385447.356248676 4818372.168740626 4737889.809304429 4962242.490951588 5354783.837351649 4697260.130719252 1.0595981644412809 0.956539147207243 0.9618521489645157 0.9161841496039812 0.933618159141033 1.0257835492714835 1.0086496547890687 1.0564121110728781 1.1399802626071969 1.0 22.16338806049425 2.117021825902642 1.5356346420071052 1.0710143316149372 0.9647659138553576 0.4044478042471349 0.049714900949719976 0.3696863252672297 1.6639523980729587 0.03038570793170184 0.016231897905979203 130.9247718896901 -2.117021825902642 -0.1062484177595796 AMLPGS(ph)PLFTR ddPTM_BT-474_Trastuzumab_2h_R1 6 AMLPGSPLFTR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR 179.6 7.3752e-06 1260506000.0 1500702.0 1608480.0 1479220.0 1552690.0 1353999.0 1524515.0 1638700.0 1300808.0 1826730.0 1450780.0 True False 1492622.3871756652 1662017.284453308 1687481.318389272 1749260.3947991063 1526422.7468691696 1419128.8663722978 1559429.820558088 1397880.8983291818 1376556.8684279206 1358189.9783247528 1.098979090551623 1.2237001531282894 1.2424486598485145 1.2879349890040537 1.1238654173784453 1.04486772028955 1.1481676683268953 1.0292233933675357 1.0135230640751909 1.0 20.373253861585336 3.018337971631276 5.07905412225201 1.0576753272759392 1.2161046194806797 0.6392384430522929 0.05848285452950965 0.12077520673225223 8.745531187394779 0.017691609157082965 0.020633412118269565 1043.1288853140209 -3.018337971631276 0.15842929220474056 AMNGESLDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AMNGESLDGR 10 0 P98179 P98179 RBM3 RNA-binding protein 3 0 ; 128.91 0.00073798 854080000.0 926480.0 1398700.0 1261440.0 1390020.0 1243080.0 1258200.0 1208590.0 1066500.0 1156460.0 1210350.0 False True 921491.9346216039 1445254.8839679942 1439039.787366965 1565996.3894780402 1401378.8696875891 1171223.5954842186 1150125.884437847 1146087.645577268 871465.9287700722 1133104.4267672324 0.8132453751421987 1.2754825149623084 1.2699974983528852 1.3820406596997035 1.236760563795297 1.0336413553918775 1.0150219673213854 1.0114580955676582 0.7690958645853855 1.0 20.111849395210573 2.5260196815173845 2.452543665995696 0.9561887158076333 1.2139714662977736 0.35825366726620567 0.15521306186119355 0.3276332263007839 3.9395649048305525 0.05920007962504274 0.051508447846162715 335.75282966865524 -2.5260196815173845 0.2577827504901403 AMS(ph)LNTLNVDAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 AMSLNTLNVDAPR 13 0 Q6P597;Q6P597-3;Q6P597-2 Q6P597 KLC3 Kinesin light chain 3 1 AMS(1)LNTLNVDAPR;AMS(0.978)LNT(0.022)LNVDAPR;AMS(0.875)LNT(0.125)LNVDAPR;AMS(0.99)LNT(0.01)LNVDAPR 157.07 4.647e-05 793660000.0 1635900.0 769750.0 707584.0 953430.0 652304.0 816850.0 771170.0 762180.0 1226100.0 1071050.0 True False 1627092.4961655764 795370.663426298 807205.6767696181 1074134.140242619 735371.047891282 760383.082158071 733865.5609445161 819057.74187162 923944.0838982635 1002694.6720279618 1.6227197985152975 0.7932331602178073 0.8050363677878482 1.0712474796242508 0.7333947894666533 0.7583396056350705 0.7318933484111014 0.8168565812911581 0.921461048585783 1.0 19.93545093079638 4.740422360285016 24.98871754731371 0.8353643094004402 1.622720065504213 0.8175706920151953 0.10965063981025583 63.480497665760176 851983.3209733304 0.025754269986494955 0.1670531070119226 55007.55735820008 -4.740422360285016 0.787355756103773 AMS(ph)TTSISSPQPGK ddPTM_BT-474_Trastuzumab_2h_R1 10 AMSTTSISSPQPGK 14 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 1 AMS(0.497)T(0.497)T(0.007)SISSPQPGK;AMS(0.781)T(0.054)T(0.165)SISSPQPGK;AMS(0.754)T(0.123)T(0.123)SISSPQPGK;AMS(0.756)T(0.122)T(0.122)SISSPQPGK;AMS(0.988)T(0.011)T(0.001)SISSPQPGK;AMS(0.974)T(0.025)T(0.001)SISSPQPGK;AMS(0.998)T(0.002)TSISSPQPGK;AMS(0.498)T(0.498)T(0.003)SISSPQPGK;AMS(0.962)T(0.037)T(0.001)SISSPQPGK;AMS(0.829)T(0.157)T(0.013)SISSPQPGK 360.44 1.8068999999999997e-82 3692760000.0 7303030.0 2794040.0 1938620.0 3590460.0 2611820.0 3333120.0 1959320.0 2483250.0 5840900.0 3627150.0 True False 7263711.297922909 2887037.9323671567 2211560.845212888 4045011.8678618474 2944419.7955300095 3102709.2597205215 1864540.206270744 2668562.724687995 4401488.459050134 3395662.1816406515 2.139114820430508 0.8502135306558242 0.6512900067533656 1.1912291775465884 0.8671121089281563 0.9137273067079403 0.549094729255391 0.7858740304368703 1.296209170290169 1.0 21.695261508452475 4.7392247216229 24.89991632244893 0.8742922135650393 2.1391152285506485 0.7493504343764864 0.21441852760532923 24.5961458625017 922004.0697528161 0.05059018862716261 0.30312950504639913 54856.07391267013 -4.7392247216229 1.2648230149856092 AMSRPILYSNWLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AMSRPILYSNWLSK 14 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 133.91 3.813e-05 760120000.0 652530.0 724870.0 620450.0 589310.0 590150.0 708630.0 735720.0 663790.0 1016820.0 786200.0 False True 649016.8509828981 748996.8597568311 707803.9669519225 663916.585576684 665302.1044069026 659644.0760355921 700130.4128766678 713325.3804573216 766238.3356899379 736024.042900316 0.8817875682775737 1.0176255340863534 0.961658757997644 0.9020311115931876 0.9039135485102737 0.896226261082794 0.9512330740145272 0.9691604334641708 1.0410506872446204 1.0 19.48939336844534 1.5257762703611377 2.5052023428805814 1.0195117860658256 0.9313078437765648 0.4567245174619283 0.038846288073125776 0.24765265991471383 3.2587670735706085 0.030790379477415062 0.010831669856632498 33.5564701360597 -1.5257762703611377 -0.08820394228926076 AMST(ph)TSISSPQPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AMSTTSISSPQPGK 14 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 1 AMS(0.095)T(0.905)T(0.001)SISSPQPGK 326.12 2.3885e-56 1551800000.0 1446000.0 557790.0 418080.0 755880.0 517230.0 683910.0 406510.0 487690.0 1213100.0 717830.0 True False 1438214.8966657042 576355.702958825 476942.0299834962 851574.3304978773 583096.174637604 636632.9114509717 386845.5582809959 524083.9042396416 914147.7597071882 672017.4748348176 2.14014508628547 0.8576498745073463 0.7097167080375832 1.2671907537928162 0.8676800774874635 0.9473457689585477 0.575648063878224 0.779866482442978 1.3603035545048683 1.0 19.358139223110108 4.7398369425431826 24.945011366400173 0.9029786723278417 2.1401454978733216 0.7177954683025267 0.22718514759288125 54.51990836102791 1065438.875528687 0.05376396083608161 0.33519172177541867 54933.458544835965 -4.7398369425431826 1.23716682554548 AMSTT(ph)SISSPQPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AMSTTSISSPQPGK 14 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 1 AMS(0.017)T(0.283)T(0.7)SISSPQPGK 332.81 1.9558999999999996e-67 1878300000.0 1596400.0 601380.0 460480.0 776250.0 531760.0 737420.0 385260.0 537450.0 1259100.0 747630.0 True False 1587805.1597767142 621396.5697581125 525311.5814360897 874523.1704092934 599476.484011547 686443.8910999631 366623.50196387875 577557.2481158009 948811.6760756088 699915.6133217545 2.2685665665337753 0.8878164137659459 0.750535595202677 1.2494694414071756 0.8564982300744374 0.980752362191414 0.5238110066210799 0.825181260601905 1.355608673412227 1.0 19.416821465664285 4.739160489458704 24.75515672726673 0.911027748211027 2.2685670354286316 0.7566715500311434 0.22617448411500915 20.10368371877187 829404.5524972952 0.053518435470169594 0.3195095507389294 54847.961297977294 -4.739160489458704 1.3575392872176044 AMSTTSISS(ph)PQPGK ddPTM_BT-474_Trastuzumab_2h_R1 6 AMSTTSISSPQPGK 14 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 1 AMSTTS(0.003)IS(0.204)S(0.792)PQPGK;AMSTTS(0.001)IS(0.081)S(0.918)PQPGK;AMSTTSIS(0.032)S(0.968)PQPGK;AMSTTSIS(0.123)S(0.877)PQPGK;AMSTTSIS(0.117)S(0.883)PQPGK;AMSTTSIS(0.02)S(0.979)PQPGK 323.11 2.2841999999999996e-56 4740800000.0 8738080.0 8029760.0 7291910.0 7042260.0 6910410.0 9716390.0 8978180.0 8047920.0 11278200.0 10001040.0 True False 8691035.148171946 8297025.707507587 8318547.545582077 7933809.393940809 7790409.7522909455 9044718.829221837 8543871.133421745 8648496.656909708 8498838.730137337 9362765.064878888 0.928255177604883 0.8861725836346095 0.8884712462546106 0.8473788820891915 0.8320629320833779 0.9660307362778877 0.9125371697588638 0.9237118091696537 0.907727436419155 1.0 23.15850322694076 2.7313861702175988 24.987625020390343 0.9337837063926593 0.8760580651145313 0.4561881529431443 0.035206895803559735 588.2691314420989 2048857.716343589 0.011317309529469148 0.010872365804893475 538.7486193660986 -2.7313861702175988 -0.05772564127812796 AMT(ph)PEQEETASLLSSVTQGMESAYVSPSGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 AMTPEQEETASLLSSVTQGMESAYVSPSGYR 31 0 Q15276-2;Q15276 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 AMT(0.829)PEQEET(0.148)AS(0.021)LLS(0.001)S(0.001)VT(0.001)QGMESAYVSPSGYR;AMT(0.908)PEQEET(0.069)AS(0.022)LLSSVTQGMESAYVSPSGYR 76.259 0.010667 74628000.0 25232.0 27053.0 23879.0 23359.0 22458.0 30109.0 26003.0 24886.0 34445.0 34134.0 True False 25096.15371553875 27953.44275111617 27240.95564001123 26316.247004947756 25317.89318100518 28027.635698962287 24745.135548893595 26743.119688547467 25956.49128935298 31955.538896412327 0.7853459707530175 0.8747604864912645 0.8524642857163518 0.823526935041058 0.7922849701604513 0.8770822419805592 0.7743613909659884 0.8368852665961436 0.8122689269454672 1.0 14.96377839666244 -1.4642623843299831 6.07209797743904 1.000096776318798 0.8266893227784685 0.7050269078762097 0.033863966493770756 4.1161653591362436e-05 3.6316855559218595e-06 0.030420407737577634 0.007166170422776351 0.03433504458469117 1.4642623843299831 -0.1734074535403295 AMTGVEQWPYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AMTGVEQWPYR 11 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 147.41 8.2155e-05 440520000.0 130760.0 131270.0 127290.0 142490.0 127380.0 126100.0 150160.0 101910.0 156930.0 144960.0 False True 130056.00268880176 135639.24259560916 145211.32557548603 160529.21939017097 143601.08795958845 117383.00380747099 142896.18713309476 109515.04168849446 118256.70425426502 135708.5286935 0.9583480415039752 0.9994894492000033 1.070023579015054 1.1828970583914362 1.0581581669337372 0.8649640883852073 1.052963940503903 0.8069871712767296 0.8714021542547983 1.0 17.05015186518012 2.7501889840879263 23.941461112350485 0.9103258860235379 1.0588421830522943 0.3838324489445102 0.08472049789390215 427.7205114793044 880625.8693640175 0.026881306329399345 0.028271201447051628 562.5860823604298 -2.7501889840879263 0.14851629702875635 AMTLS(ph)PQEEVAAGQMASSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AMTLSPQEEVAAGQMASSSR 20 0 Q9Y6A5;A0A494BZT8 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 1 AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR 350.49 4.4899999999999986e-95 480540000.0 219520.0 239438.0 227403.0 235493.0 246236.0 279550.0 278912.0 238999.0 308098.0 292548.0 True False 218338.12871096484 247407.54908667266 259419.36577769092 265306.3896543585 277592.69504488306 260225.3664899171 265419.96101269126 256834.31899233125 232171.37620168563 273877.3361770564 0.7972113784903087 0.9033516702774137 0.9472100517655878 0.9687051632590841 1.0135657769996154 0.9501529776881078 0.9691198429106319 0.9377713489454009 0.8477202949410583 1.0 18.063170359911293 4.706825789445805 1.9436064571040306 0.9548511470124026 0.7558668176781191 0.56454741765337 0.04208108900813505 0.5299215889253545 2.237270424740126 0.010922302657638553 0.1850151803443161 50912.66017816446 -4.706825789445805 -0.19898432933428345 ANAS(ph)PQKPLDLK ddPTM_BT-474_Trastuzumab_2h_R1 5 ANASPQKPLDLK 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK 136.35 6.750199999999999e-05 3331460000.0 9541120.0 6420320.0 5683060.0 5244670.0 5012410.0 9133170.0 9225210.0 8366860.0 13379200.0 9599360.0 True False 9489751.670038093 6634016.470034598 6483185.449956965 5908644.68425187 5650710.702618316 8501815.455069616 8778951.348575499 8991237.5792542 10082075.432094958 8986720.626374424 1.0559749284057371 0.7382021480188159 0.7214183815762527 0.6574861876657265 0.6287845074469642 0.9460420334107531 0.9768804120616414 1.0005026252698366 1.1218859305034878 1.0 23.099363322528966 2.5559266966245886 4.879535913300359 1.0149627345119905 0.7518119137495969 0.546442309318204 0.114647341452913 0.17474771645382575 7.442631513457333 0.03923212861167502 0.03637647254328851 359.68861917554466 -2.5559266966245886 -0.2631508207623936 ANDHQGFYLLNSIIEHMPPESVDQYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANDHQGFYLLNSIIEHMPPESVDQYR 26 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ; 159.7 1.1035e-11 828380000.0 216143.0 247185.0 265932.0 243040.0 241330.0 288211.0 264734.0 206469.0 235331.0 278825.0 False True 214979.31010374468 255412.40329851222 303372.9140776194 273808.8390805474 272061.9450250236 268287.65194571804 251927.80503791085 221876.76520833845 177336.82832384156 261030.14978590765 0.8235803805808138 0.9784785531786155 1.1622140749888108 1.0489548402938151 1.042262532692733 1.0278033099462376 0.9651291440645366 0.8500043592294525 0.6793729707824561 1.0 17.993856926574885 1.7985428177817038 2.8360259127379126 0.8197891291461042 1.0204925753555607 0.33114803853336416 0.10711663291912064 0.2586134546128121 3.9444853273713143 0.06086712556080228 0.02957450681274367 62.88438497742824 -1.7985428177817038 0.20070344620945646 ANEHQGIGFLNDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ANEHQGIGFLNDPR 14 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 ;; 143.28 9.169e-06 2205740000.0 2327160.0 2739940.0 2609640.0 2677660.0 2667740.0 2775810.0 2777950.0 2443100.0 3180510.0 2731830.0 False True 2314630.829131783 2831137.2465712945 2977054.6286024954 3016651.481453332 3007460.8760662 2583924.7882538936 2643569.945700455 2625416.5278104288 2396715.927150529 2557482.270562671 0.9050427663854504 1.1070017099076181 1.1640568002637666 1.1795395480061879 1.175945933499875 1.0103392770286557 1.0336611033940204 1.0265629435752888 0.9371388238883971 1.0 21.286292808020107 2.7094212360301135 21.267617848945353 1.0077779376056386 1.1136309785796772 0.3087850100672509 0.07771911249690083 146.5297077347789 106944.75039708892 0.02609617923530467 0.02461340504298855 512.1783727906162 -2.7094212360301135 0.10585304097403858 ANESSPKPVGPPPER ddPTM_BT-474_Trastuzumab_2h_R1 1 ANESSPKPVGPPPER 15 1 Q9BQI0-3;Q9BQI0;Q9BQI0-2;A6PVM9 Q9BQI0-3 AIF1L Allograft inflammatory factor 1-like 0 64.53699999999999 0.063361 0.0 55428.0 72254.0 59149.0 63934.0 67176.0 64236.0 67875.0 58955.0 73512.0 79705.0 False True 55129.581806629736 74658.93071153463 67476.66506767557 72028.03784469928 75730.46541665347 59795.516515279196 64591.62694232013 63354.5214674241 55395.952610332926 74618.15866111634 0.7388225975530252 1.000546409227323 0.9042928193139371 0.9652883311128023 1.0149066497417707 0.8013534183662288 0.8656287973503553 0.849049649632245 0.7423923828235641 1.0 16.187239139017294 2.719910146205398 24.862743739996084 0.8442411161453263 0.9300943412083352 0.1286651941112329 0.09359473767342616 1346.8831353691915 1795513.118341746 0.0285689292818428 0.026978662603514603 524.6988909129471 -2.719910146205398 0.08585322506300896 ANFDKESER ddPTM_BT-474_Trastuzumab_2h_R1 4 ANFDKESER 9 1 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ;;; 176.38 4.8518e-05 1967540000.0 2196290.0 2640250.0 2469520.0 2517430.0 2098860.0 2525930.0 2808590.0 2249540.0 4044090.0 2873240.0 False True 2184465.4186707586 2728129.1251851735 2817206.950547366 2836136.37988209 2366137.380082132 2351318.4044996467 2672727.7718442883 2417412.0977326613 3047478.2075296673 2689867.3632954787 0.8121089717949775 1.0142244046720648 1.0473404707568472 1.0543777803257222 0.8796483471152531 0.8741391626161595 0.9936280904831709 0.8987105203473601 1.1329473895679611 1.0 21.359103604918865 1.2428602597207103 24.99998963649209 1.0664736976735467 0.9509616038198453 0.25197337670904096 0.08224441247208533 144.1073116586941 837942.5015379066 0.05988106289630363 0.020148089848777057 17.492837417305964 -1.2428602597207103 -0.11551209385370143 ANGMELDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANGMELDGR 9 0 P62995;P62995-3;H7BXF3;Q13595;Q13595-3;Q13595-4;Q13595-2 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 0 ; 112.8 0.0044286 736530000.0 1081460.0 1307940.0 1160000.0 1202790.0 1243480.0 1194530.0 1199610.0 1139930.0 1359690.0 1180640.0 False True 1075637.5395215012 1351473.9922335723 1323317.9170992533 1355063.090675164 1401829.8073166057 1111954.9527211601 1141580.2813447758 1224997.3650472534 1024612.6184125508 1105290.5444032412 0.9731717555787559 1.222731886269097 1.1972579732994346 1.2259790853515151 1.268290780568895 1.0060295533619326 1.0328327579796024 1.1083034874858566 0.9270074946363995 1.0 20.07599422570315 2.7239722003847544 24.730334979578615 1.0301404210684342 1.1837924118215508 0.46937260526702884 0.08556942056646534 659.113522380933 1117329.7364128048 0.027553876333641723 0.02609230782128476 529.6295407008264 -2.7239722003847544 0.15365199075311664 ANGMELDGRR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANGMELDGRR 10 1 P62995;P62995-3;H7BXF3;Q13595;Q13595-3;Q13595-4;Q13595-2 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 0 ; 122.69 0.00077261 1014720000.0 460970.0 740630.0 632040.0 767880.0 665190.0 577810.0 695420.0 590340.0 909000.0 666360.0 False True 458488.18873858155 765281.42182971 721025.7382098362 865093.5292674908 749898.0036099752 537867.3547184365 661779.8778376186 634394.1684857799 684989.1299759566 623832.3343005013 0.7349541912614727 1.2267421545050476 1.1558005229374928 1.3867404456319405 1.2020826147955772 0.8621985830881038 1.0608297156954323 1.016930565481383 1.0980340266331818 1.0 19.25079880644677 2.772331495219905 24.984062675795837 1.0137526977365687 1.160457952357757 0.13598391696990442 0.1645881579095207 1192.9150189169432 882529.2104196895 0.05017121360836884 0.05321198214227214 592.0133431479356 -2.772331495219905 0.14670525462118822 ANGQENGHVK ddPTM_BT-474_Trastuzumab_2h_R1 6 ANGQENGHVK 10 0 P49006;P29966 P49006;P29966 MARCKSL1;MARCKS MARCKS-related protein;Myristoylated alanine-rich C-kinase substrate 0 ;;;;; 170.89 4.1893e-06 2852280000.0 1796590.0 1911250.0 1832030.0 1594120.0 1655830.0 1357670.0 1888160.0 1718390.0 2339190.0 1957040.0 False True 1786917.3590599135 1974864.800874979 2089963.8997097767 1795935.4285511929 1866690.1356266707 1263817.4685114136 1796822.487328345 1846624.9876076155 1762727.9680401096 1832140.0316937615 0.9753170217060096 1.077900578947163 1.1407227960505095 0.9802391724888526 1.018857785614219 0.6898039705748092 0.9807233378702137 1.0079060310147052 0.9621142148236986 1.0 20.805098343124524 3.3390949139675357 2.6021501450695492 0.9369743944899437 1.0634749757454307 0.23428835764899603 0.09686935104641559 0.40672484418849736 5.589350920435716 0.02977329243887003 0.0423338896698486 2183.2069941101868 -3.3390949139675357 0.12650058125548702 ANGQENGHVKS(ph)NGDLSPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ANGQENGHVKSNGDLSPK 18 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 ANGQENGHVKS(1)NGDLSPK;ANGQENGHVKS(0.995)NGDLS(0.005)PK;ANGQENGHVKS(1)NGDLSPK;ANGQENGHVKS(1)NGDLSPK 199.87 9.5143e-16 781206000.0 574587.0 715590.0 733790.0 928320.0 801430.0 879030.0 1018310.0 753470.0 1318840.0 956990.0 True False 571493.4874346169 739407.9805667099 837101.2537829825 1045845.2168172069 903487.3600522295 818264.7251140454 969050.4549780339 809697.7574431356 993829.5535505968 895914.0788796413 0.6378887227101968 0.8253112636552766 0.9343543912489851 1.1673499071753148 1.0084531333429416 0.913329463621447 1.0816332479001236 0.9037671988095991 1.1092911440719861 1.0 19.773000854132583 4.466244090471783 1.9481436785560766 1.0143198032454455 0.6209368651867969 0.7036092193955797 0.07924678151824166 0.2501519385330128 1.492023124650899 0.020546437303849 0.1454861442143993 29257.96327699196 -4.466244090471783 -0.39338293805864855 ANGTTVHVGIHPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANGTTVHVGIHPSK 14 0 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KS10;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ; 129.38 3.9468e-05 1387220000.0 638580.0 1028890.0 864950.0 985170.0 955700.0 981650.0 1027710.0 620130.0 1056720.0 957190.0 False True 635141.9562329071 1063135.981672862 986727.441719825 1109892.4209882452 1077402.7301223022 913790.8460555429 977995.7410665482 666407.2495563352 796305.5153225461 896101.3147084108 0.7087836451167141 1.1864015421278609 1.101133795391098 1.2385791681930536 1.202322452202725 1.0197405483696766 1.0913896955778775 0.7436740004931055 0.8886333523365737 1.0 19.773302329447574 1.7566255389136474 24.999999999454943 0.8558084408116052 1.0920474558140199 0.26360402513457715 0.15138694174008074 8.122299272265979 11251.989413898542 0.06822874696465202 0.037836861368647966 57.09861038638497 -1.7566255389136474 0.23623901500241462 ANHLVPEVPTVPAHPLTYEEEEVAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ANHLVPEVPTVPAHPLTYEEEEVAGR 26 0 O15156;O15156-2 O15156 ZBTB7B Zinc finger and BTB domain-containing protein 7B 0 139.28 4.0026e-07 278750000.0 31204.0 39750.0 47660.0 43828.0 43011.0 40198.0 38648.0 32961.0 49091.0 46398.0 False True 31036.001131090314 41073.05472061756 54370.113731853766 49376.62030621395 48488.19590382998 37419.206875913704 36778.44859030262 35420.71719256661 36993.18083569825 43436.83991667369 0.7145087255571005 0.9455810965855099 1.2517050926391913 1.1367452236611764 1.1162919769680868 0.8614624578513582 0.8467109638006798 0.8154533631018124 0.8516545150766832 1.0 15.406631528677512 2.722661044875808 22.737518394882272 0.8574745938272461 1.0460293072088827 0.23264252230334603 0.1406091762870155 334.5262304373425 478394.2890853464 0.048040420701805905 0.045478840385274874 528.032975421865 -2.722661044875808 0.18855471338163654 ANHPMDAEVTK ddPTM_BT-474_Trastuzumab_2h_R1 3 ANHPMDAEVTK 11 0 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 0 ;; 98.531 0.0054514 564660000.0 1089770.0 999820.0 843080.0 912650.0 867950.0 1043010.0 1054370.0 839890.0 1396220.0 1062510.0 False True 1083902.7994048295 1033098.4042960473 961778.3358172723 1028191.3964238862 978478.2877572996 970909.173681445 1003366.0950154568 902566.8566750032 1052140.2893894727 994699.7021394236 1.0896784196009568 1.0386033112044115 0.9669032108370564 1.0336701561410222 0.98369214915091 0.9760827027425368 1.0087125721033126 0.9073762209174699 1.0577466617578195 1.0 19.923901519063406 7.999999969199566 0.685991800189411 0.9813654620633554 13.821118667175883 0.35073009493590723 0.03963800736707414 256.4211682479506 1.429574949410156 0.014469453281459665 5037.581673123841 99999992.90793818 -7.999999969199566 12.839753205112528 ANIVAYHDSIMNPDYNVEFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANIVAYHDSIMNPDYNVEFFR 21 0 Q9UBT2;K7EPL2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 ; 280.69 5.5149e-45 954440000.0 178736.0 496810.0 591710.0 648840.0 615560.0 638210.0 573010.0 563500.0 405340.0 597730.0 False True 177773.70523543633 513346.02052201284 675017.6247644819 730983.0774729362 693947.9172900326 594092.044884742 545291.3171892286 605551.2313950214 305449.3882777278 559582.3596576003 0.31768997390163134 0.9173734869628865 1.206288248931783 1.3063011455904603 1.2401175721740916 1.0616704308696536 0.9744612348446506 1.082148536214667 0.5458524254850127 1.0 19.09399095796229 4.70897743014093 3.2954381605878518 1.0675380487785389 0.23895045427557768 0.5484935900506 0.19839287654411117 0.2158034836340107 3.8955118630545558 0.049200095890459254 0.43568226769942675 51165.52446271857 -4.70897743014093 -0.8285875945029612 ANIVHLMLSSPEQIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANIVHLMLSSPEQIQK 16 0 P55060-3;P55060;P55060-4;P55060-2 P55060-3 CSE1L Exportin-2 0 ; 221.78 1.0254000000000001e-14 1079930000.0 1137730.0 1195520.0 1095720.0 1060240.0 876860.0 1303820.0 1288440.0 1115110.0 1502460.0 1378470.0 False True 1131604.5880936875 1235312.1604928977 1249987.8518310275 1194466.2752911441 988522.9234435915 1213689.9922621474 1226113.2348812222 1198325.170613847 1132198.8649325378 1290494.864432457 0.87687647528249 0.9572391138775839 0.9686112562569213 0.9255877789304146 0.7660029889993644 0.9404841706176899 0.9501108982874187 0.9285780235482417 0.8773369783462597 1.0 20.299492969514237 ANKLDHVVTIIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANKLDHVVTIIK 12 1 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6;Q99873-5;H0YDE4;E9PNR9 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ; 176.05 1.5642e-05 2054850000.0 3422800.0 3887400.0 3297300.0 3189000.0 3258500.0 3978700.0 4201500.0 3858400.0 5308100.0 4303300.0 False True 3404372.0251088333 4016789.759017078 3761531.1793546183 3592727.0730244606 3673450.6603573454 3703661.833852377 3998257.3937113537 4146333.4005582086 3999989.879895911 4028659.7097595125 0.845038367688805 0.9970536228925766 0.933692952582277 0.8917921422653305 0.911829473077196 0.9193285362077562 0.9924534911761079 1.029209141321524 0.992883531514427 1.0 21.941868519319044 2.18116104700752 4.146855357756957 1.0104923760496778 0.9192264267068634 0.5771485730628072 0.03660076420504912 0.15168234914843992 5.306319642650028 0.013930841848476871 0.010218832845301676 151.76130311287332 -2.18116104700752 -0.0912659493428144 ANLACS(ph)PLGGGEPSPGAGEPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ANLACSPLGGGEPSPGAGEPSK 22 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 ANLACS(1)PLGGGEPSPGAGEPSK 219.64 1.1351e-25 144760000.0 287490.0 248040.0 218380.0 257120.0 217870.0 298310.0 305320.0 262970.0 378000.0 320420.0 True False 285942.185783142 256295.86145665354 249126.00580701252 289671.36563689244 245614.45308333758 277688.53184620646 290550.50516433455 282594.1567346031 284846.9649404973 299970.52127463656 0.9532342863829243 0.8544034939420034 0.8305016264545756 0.965666107476225 0.8187953004170915 0.9257194029141619 0.968596860550582 0.9420730928285963 0.9495831914753619 1.0 18.19446120548956 2.485985728098198 14.79975168395502 0.957163127580976 0.8831438112729431 0.3951331306626683 0.046595529317854836 2.1378255190959496 3570.2398669400095 0.01483274335560208 0.013112966985480336 306.1862812280012 -2.485985728098198 -0.07401931630803293 ANLEAFTVDKDITLTNDKPATAIGVIGNFTDAER ddPTM_BT-474_Trastuzumab_2h_R1 2 ANLEAFTVDKDITLTNDKPATAIGVIGNFTDAER 34 2 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ; 301.49 2.3154999999999997e-90 1194280000.0 918800.0 758640.0 733930.0 700720.0 726240.0 962630.0 970380.0 948620.0 1326660.0 1026630.0 False True 913853.2828882776 783890.873792436 837260.964566081 789431.0801535606 818722.3592382754 896085.6538872784 923439.0121884145 1019410.8413947572 999722.4193332263 961109.5944578369 0.9508315057491267 0.815610288683706 0.8711399505260177 0.8213746743407339 0.8518511977815784 0.9323449261712566 0.9608051126670185 1.0606603526518825 1.0401752569093548 1.0 19.87434142402672 2.2430800436677027 1.704270727562802 1.0382785159521317 0.8584679805266663 0.7721707933830841 0.03992160248066981 0.15122848176824288 0.8756214836481837 0.02013435276104052 0.012558062114063783 175.01692279635878 -2.2430800436677027 -0.17981053542546543 ANLQIDQINTDLNLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ANLQIDQINTDLNLER 16 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 310.29 2.8380999999999997e-57 262800000.0 271990.0 303790.0 289820.0 303340.0 274260.0 310970.0 320270.0 281450.0 312400.0 324920.0 False True 270525.63606092974 313901.46650506725 330624.13683940086 341742.81289784884 309185.38533362205 289473.37584464083 304777.31654978875 302453.22817414126 235413.20594553265 304183.3274219926 0.8893506371755555 1.0319482963298403 1.086923927229999 1.1234764764860043 1.0164442211676188 0.9516411642215199 1.0019527340069236 0.9943123140163064 0.7739188335557413 1.0 18.214581554176426 1.4081006916177488 8.874249114679795 0.8848123412742236 1.0171471420710532 0.2870964764227103 0.07926567919212801 0.3465821973936606 39.61603157812957 0.05172864541361698 0.01933760829371903 25.59179166421783 -1.4081006916177488 0.13233480079682958 ANNHQQQQGLQDSSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANNHQQQQGLQDSSSK 16 0 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 ; 181.81 2.2448e-09 341550000.0 289670.0 252140.0 247140.0 251180.0 263760.0 318910.0 307280.0 265370.0 347050.0 292480.0 False True 288110.4489053623 260532.32747815162 281935.16382061096 282979.3622459344 297348.2725719976 296864.50233339105 292415.6924764074 285173.25692155573 261524.17773174477 273813.675995274 1.052213509270936 0.9514949409709119 1.0296606361819458 1.033474172600563 1.0859511362651215 1.084184350012214 1.067936769094961 1.0414865359993115 0.9551172956615165 1.0 18.062834980191955 5.775194611172607 13.939070088080886 1.0340777882127772 1.0918784569262152 0.0 0.04579038497085186 0.0 0.0 0.010400142535471432 0.0 595929.1247822574 -5.775194611172607 0.05780066871343803 ANNIDYTVHSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANNIDYTVHSVR 12 0 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 ; 172.99 3.427e-05 929690000.0 331810.0 411600.0 377980.0 381860.0 405330.0 413650.0 395680.0 335200.0 447020.0 402290.0 False True 330023.5718275569 425299.8571825461 431196.29853894404 430203.43684701255 456946.37292086676 385055.3491273619 376539.44675561355 360214.3261111113 336857.9107611139 376615.50778220285 0.8762877922127674 1.129268042325271 1.1449244378654353 1.1422881638102902 1.2132967535291175 1.022409702125277 0.9997980406408722 0.9564511250010014 0.894434519557594 1.0 18.522732881026897 2.3455809397566845 2.6217440352173185 0.9556198923363796 1.107608945663187 0.35319906779657806 0.08733541100547802 0.29475200769397164 4.144134282458657 0.03526562204786301 0.027285931646852914 221.60570658849767 -2.3455809397566845 0.15198905332680746 ANPELCGSLHLNGS(ph)PSSCIASR ddPTM_BT-474_Trastuzumab_2h_R1 1 ANPELCGSLHLNGSPSSCIASR 22 0 Q9NXR5 Q9NXR5 ANKRD10 Ankyrin repeat domain-containing protein 10 1 ANPELCGSLHLNGS(0.988)PS(0.012)SCIASR 251.47 9.3492e-33 329110000.0 153930.0 221240.0 222990.0 222570.0 213070.0 226520.0 232020.0 208450.0 186370.0 234710.0 True False 153101.25798323093 228603.83965759585 254385.0537361745 250747.33917938385 240203.2015351668 210861.20557072404 220796.30619752707 224005.59748765227 140441.61073005403 219730.60685465904 0.6967680114063484 1.0403823251114308 1.1577133353317395 1.1411579969159273 1.0931713381834391 0.9596351122363136 1.0048500268493452 1.0194555992639702 0.6391536105980412 1.0 17.745376314985272 1.3459929382691243 12.364909634323764 0.819753609678712 1.0243045053785822 0.21877602747885894 0.1460833916377982 0.5927047827819225 63.3748752170751 0.0948936263069474 0.03470217750565866 22.181603516956333 -1.3459929382691243 0.20455089569987017 ANPFGGASHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANPFGGASHAK 11 0 D6RD47;P62266;D6RDJ2;D6RIX0;D6R9I7 D6RD47 RPS23 40S ribosomal protein S23 0 ; 147.24 3.5392e-05 2592300000.0 3312200.0 3658000.0 3323600.0 3317500.0 3064100.0 3506700.0 3652300.0 3360300.0 4924300.0 3933600.0 False True 3294367.4832200115 3779754.3186923065 3791533.9907509233 3737495.159849063 3454294.9726564214 3264290.0828838903 3475624.295859096 3611062.6492576557 3710772.2472393913 3682554.280275608 0.8945876238308851 1.0263947333885393 1.0295935109657526 1.0149192314333906 0.9380160371724098 0.886420086288473 0.9438080287031031 0.9805864012919311 1.0076626072057984 1.0 21.812275359841863 1.4212326875513164 4.398917456473322 1.0028161710631514 0.9650780509894428 0.10667361385152796 0.04774066441526186 0.5838966782165178 19.525876676740268 0.03677704296106413 0.013292906471568004 26.377442655309153 -1.4212326875513164 -0.03773812007370858 ANPQVGVAFPHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANPQVGVAFPHIK 13 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 144.47 4.1329e-05 1806490000.0 1770270.0 2208880.0 2093040.0 2063030.0 2025360.0 2079190.0 2227400.0 1798880.0 2179900.0 2131900.0 False True 1760739.0630154877 2282401.235503842 2387721.838970185 2324209.3864727668 2283277.5907507613 1935460.4891868003 2119652.1525056968 1933121.5601275505 1642692.8541634644 1995840.3167885821 0.8822043768755081 1.14357908110422 1.1963491361935017 1.1645267243686852 1.144018171967125 0.9697471650943817 1.0620349407092522 0.9685752631944275 0.823058257890415 1.0 20.92856486745783 2.0450177361199984 1.1960980724615455 0.9203772221241223 1.1099309476255748 0.337665689404101 0.09812596112242836 0.5217883577710799 1.3874157146514607 0.072250462411978 0.034774928001182995 110.9220113695029 -2.0450177361199984 0.18955372550145244 ANQIS(ph)PSNSSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 ANQISPSNSSLK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 ANQIS(0.742)PS(0.258)NS(0.001)SLK;ANQIS(0.982)PS(0.018)NSSLK;ANQIS(0.871)PS(0.115)NS(0.01)S(0.004)LK 210.07 5.0147000000000006e-08 90123000.0 490580.0 406340.0 362560.0 343331.0 344626.0 484360.0 451820.0 426660.0 518730.0 451180.0 True False 487938.7717885617 419864.78126228275 413605.2965719869 386796.6693974798 388512.07834166347 450877.3332607982 429963.7404799874 458499.53573558095 390895.9421258833 422385.3061253678 1.1551982626112876 0.9940326407511512 0.9792132694342002 0.915743667661287 0.9198049096583618 1.0674550622908594 1.0179419933523215 1.0855006769565372 0.9254487229010325 1.0 18.688200121754416 2.706729824645132 24.833121878124327 1.0294279920468672 0.9878314925117314 0.02005719842028808 0.07372141354214791 1877.9856003190387 1465128.6991350905 0.02435744408480407 0.022966381344225028 509.01411397150866 -2.706729824645132 -0.04159649953513578 ANS(ph)DIISLNFR ddPTM_BT-474_Trastuzumab_2h_R1 4 ANSDIISLNFR 11 0 Q8TC76 Q8TC76 FAM110B Protein FAM110B 1 ANS(0.999)DIIS(0.001)LNFR;ANS(1)DIISLNFR;ANS(1)DIISLNFR;ANS(1)DIISLNFR 217.16 1.2119000000000002e-11 324118000.0 751566.0 554770.0 509351.0 543534.0 480365.0 565213.0 577477.0 537440.0 867080.0 626637.0 True False 747519.652162832 573235.1840844536 581063.1934417423 612345.3486702036 541536.6354035776 526141.1556782871 549542.2313336318 577546.501865022 653399.7522767365 586644.4901690724 1.2742293922293466 0.9771423642268349 0.9904860663982005 1.0438099375888183 0.9231087046389976 0.8968654176341995 0.936755122638674 0.9844914791555813 1.1137916800146288 1.0 19.16212696133863 4.738903173434866 24.61506393377684 0.9799995186378478 1.2742294975008528 0.6846522031397562 0.05876083887205966 12.996530775488262 933422.9489824591 0.014439668530404544 0.0844964066826499 54815.473942660974 -4.738903173434866 0.29422997886300495 ANS(ph)FVGTAQYVSPELLTEK ddPTM_BT-474_Trastuzumab_2h_R1 6 ANSFVGTAQYVSPELLTEK 19 0 E9PER6;O15530-5;O15530-2;O15530;O15530-4;Q6A1A2 E9PER6;Q6A1A2 PDPK1;PDPK2P 3-phosphoinositide-dependent protein kinase 1;Putative 3-phosphoinositide-dependent protein kinase 2 1 ANS(0.999)FVGT(0.001)AQYVSPELLTEK;ANS(1)FVGTAQYVSPELLTEK;ANS(1)FVGTAQYVSPELLTEK;ANS(0.881)FVGT(0.119)AQYVSPELLTEK;ANS(0.962)FVGT(0.038)AQYVSPELLTEK;ANS(0.73)FVGT(0.27)AQYVSPELLTEK 405.8 1.528399999999999e-147 1046289000.0 1910847.0 1185786.0 1086820.0 1089362.0 1064070.0 1584472.0 1299590.0 1389092.0 2262580.0 1538422.0 True False 1900559.2120670597 1225254.1701872263 1239834.8091912158 1227275.1175051967 1199573.0072629878 1474941.1800858935 1236723.8667840858 1492753.0987062526 1704997.4760187045 1440238.5908506617 1.3196141418100138 0.8507299956901883 0.8608537620554386 0.8521331988336179 0.8328988091858257 1.0240950280430516 0.8586937432732086 1.0364623668531017 1.1838298785006627 1.0 20.457876398577966 1.5433877821660198 5.334123197258919 1.097654598588609 0.9318056386462615 0.14960503535405945 0.14463353057274855 0.235332275974702 14.282899002274595 0.08011457277291241 0.03590339202714527 34.94522025887281 -1.5433877821660198 -0.1658489599423475 ANS(ph)GGVDLDSSGEFASIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ANSGGVDLDSSGEFASIEK 19 0 Q92766;Q92766-2;Q92766-5;Q92766-3;A0A087X055 Q92766 RREB1 Ras-responsive element-binding protein 1 1 ANS(1)GGVDLDSSGEFASIEK;ANS(1)GGVDLDSSGEFASIEK;ANS(1)GGVDLDSSGEFASIEK 278.45 2.6816e-34 368400000.0 973650.0 1086940.0 990240.0 904560.0 841820.0 1308170.0 1247340.0 1237000.0 1676600.0 1223250.0 True False 968407.9765826835 1123118.1408308952 1129657.1846796225 1019077.2032533743 949020.7871419446 1217739.287000946 1187001.3988984693 1329311.2213587235 1263424.3952889866 1145181.1377229865 0.8456373796971641 0.9807340549321655 0.9864441069347065 0.8898829798049677 0.8287080147241369 1.0633595392797248 1.0365184683871373 1.1607868638160168 1.1032528860902375 1.0 20.12714438234165 2.6071688950317644 5.743006259214959 1.0891899100415563 0.9143988978046069 0.6391069251646915 0.06202962695466681 0.14936725320651226 6.368911390941683 0.021069835204851 0.019780957101828735 404.7332599105343 -2.6071688950317644 -0.17479101223694937 ANS(ph)LDNER ddPTM_BT-474_Trastuzumab_2h_R1 1 ANSLDNER 8 0 F8VW41;Q86VP3-4;Q86VP3;Q86VP3-3;Q86VP3-2 F8VW41 PACS2 Phosphofurin acidic cluster sorting protein 2 1 ANS(1)LDNER 105.36 0.0046187 577000000.0 692770.0 717350.0 646210.0 684570.0 725320.0 684130.0 769260.0 704190.0 876090.0 713150.0 True False 689040.2032939822 741226.5611027675 737190.7510419891 771236.4918094564 817685.2026915423 636837.703368795 732047.9549414252 756740.2336043664 660189.3585045502 667636.156441567 1.0320594483176235 1.1102253135202111 1.1041803891675686 1.155174842417266 1.2247467348828462 0.9538694051009391 1.096477396974973 1.1334620306331447 0.988846023593588 1.0 19.34870256171141 2.739392632660971 24.999967659184893 1.0553519894216257 1.1249300359139582 0.28713850629057003 0.06762243077808161 131.71290843584123 3957679.139225329 0.022130003978494975 0.022201849167316046 548.7728698706775 -2.739392632660971 0.06957804649233257 ANS(ph)LGDLYAQK ddPTM_BT-474_Trastuzumab_2h_R1 5 ANSLGDLYAQK 11 0 Q13009;Q13009-2 Q13009 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 1 ANS(1)LGDLYAQK;ANS(1)LGDLYAQK;ANS(1)LGDLYAQK;ANS(1)LGDLYAQK;ANS(1)LGDLYAQK 193.06 1.1724e-06 1437356000.0 2155156.0 1825337.0 1634437.0 1626778.0 1509154.0 2207424.0 2025803.0 1881440.0 2938910.0 2197314.0 True False 2143552.8795563434 1886092.2386054837 1864551.5228189202 1832727.9280026932 1701335.816443437 2054829.9745971654 1927807.1695710237 2021842.6065587397 2214655.009876395 2057079.5393048408 1.0420369453875007 0.9168786148360896 0.9064071112432616 0.8909368320400659 0.827063700715422 0.9989064279408293 0.9371573304464917 0.9828704082302967 1.0766015448409956 1.0 20.972166147699483 1.612122649559428 1.8735745812817952 1.0382452423685997 0.9236975288120991 0.3435181898739561 0.05820925533410465 0.3426861148095644 2.4946692287645367 0.046011788983465404 0.016673229546396738 40.937625578353654 -1.612122649559428 -0.11454771355650062 ANS(ph)PEKPPEAGAAHKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ANSPEKPPEAGAAHKPR 17 2 Q9UFC0;F8WDB4 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 ANS(1)PEKPPEAGAAHKPR 156.87 2.4458000000000003e-08 5084500000.0 1583700.0 943560.0 920550.0 768070.0 725010.0 1387500.0 1374900.0 1352200.0 2233000.0 1339500.0 True False 1575173.5351656112 974965.8242059355 1050155.438435962 865307.5832480091 817335.7260290567 1291585.390823681 1308390.8343719507 1453108.0303324726 1682707.0706670098 1254011.963196355 1.2561072632438421 0.7774772911422967 0.8374365390894817 0.6900313622546502 0.6517766576530476 1.0299625751029957 1.0433639173879883 1.158767278925028 1.3418588658260904 1.0 20.25811968075099 2.3133312323376027 2.1706934098702386 1.1647090333723147 0.8328865032730431 0.37604166642330883 0.1764845541940465 0.3106682976377771 2.999311366158582 0.0779057632408558 0.05617457621909422 205.74592026092472 -2.3133312323376027 -0.33182253009927154 ANSALT(ph)PPKPESGLTLQESNTPGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ANSALTPPKPESGLTLQESNTPGLR 25 1 Q9BW04;Q9BW04-2 Q9BW04 SARG Specifically androgen-regulated gene protein 1 ANSALT(1)PPKPESGLTLQESNTPGLR;ANS(0.001)ALT(0.998)PPKPES(0.001)GLTLQESNTPGLR;ANS(0.001)ALT(0.999)PPKPESGLTLQESNTPGLR;ANS(0.019)ALT(0.981)PPKPESGLTLQESNTPGLR 147.73 3.714e-07 5427910000.0 1937240.0 1798590.0 1639410.0 1618410.0 1491610.0 2220260.0 2124960.0 1904570.0 2661910.0 2082290.0 True False 1926810.1150875983 1858454.980879384 1870224.6779928312 1823300.540060686 1681557.69203487 2066778.6521298636 2022167.5666644974 2046698.684610497 2005917.9482665574 1949396.4694618399 0.9884136681644464 0.9533489005407086 0.9593865113078485 0.9353154007527444 0.8626042564338332 1.060214627710098 1.0373300651471618 1.0499140204021806 1.028994347578931 1.0 20.894596105972944 2.714914079286008 24.999979685630322 1.0394521916952282 0.9414031608898729 0.6708427766372671 0.03336659600377994 461.0613316766538 487450.3698224415 0.010883495093023485 0.010266216081245082 518.6974098086472 -2.714914079286008 -0.09804903080535532 ANSFTVSSVAAPSWLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANSFTVSSVAAPSWLHR 17 0 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7C0A4 Q00341 HDLBP Vigilin 0 ; 141.13 6.3548e-07 1223390000.0 794330.0 956710.0 999890.0 901390.0 813100.0 879710.0 926790.0 880070.0 1072440.0 905090.0 False True 790053.4155383601 988553.5140065926 1140665.8208003207 1015505.881578401 916643.4653787215 818897.718314594 881957.6270183852 945745.2923049099 808151.5319597524 847326.3813134664 0.9324074323210312 1.1666738293621943 1.3461941537004194 1.198482549314981 1.0818068286246494 0.9664489816134318 1.0408711996565432 1.1161523034829641 0.9537665175808786 1.0 19.69255826218067 3.0770539858742776 4.662323435829446 1.0315840038514779 1.1735845555822404 0.2950213441502276 0.1036059337678856 0.2833283340720346 11.478245204904551 0.03198585774793979 0.03840329495866842 1194.1365348516526 -3.0770539858742776 0.14200055173076254 ANSFVGT(ph)AQYVSPELLTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ANSFVGTAQYVSPELLTEK 19 0 E9PER6;O15530-5;O15530-2;O15530;O15530-4;Q6A1A2 E9PER6;Q6A1A2 PDPK1;PDPK2P 3-phosphoinositide-dependent protein kinase 1;Putative 3-phosphoinositide-dependent protein kinase 2 1 ANS(0.027)FVGT(0.973)AQYVSPELLTEK 327.03 4.098899999999998e-74 439490000.0 364200.0 224480.0 221460.0 217650.0 208880.0 284360.0 248700.0 247920.0 420270.0 274800.0 True False 362239.1876664244 231951.68109897457 252639.64303517234 245204.46768384278 235479.62987124233 264702.8625114392 236669.43087373878 266421.0493122513 316700.0898294783 257262.0287318832 1.4080553957068715 0.9016164656802621 0.982032382627565 0.9531312059246538 0.9153299110326835 1.0289231715081855 0.9199547715624761 1.0356019138367039 1.2310409405950111 1.0 17.972879008839346 -0.4781643297611473 6.661773975662518 0.9999999942964081 1.0243619042816456 0.0 0.1532334593984802 0.0 0.0 0.1389397480776009 0.03274841292466876 0.3325337042993847 0.4781643297611473 0.024361909985237573 ANSTSDSVFTETPS(ph)PVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 ANSTSDSVFTET(0.048)PS(0.952)PVLK;ANSTSDSVFTETPS(1)PVLK 334.62 5.229399999999999e-75 228080000.0 531845.0 668789.0 572737.0 554761.0 604727.0 726265.0 631435.0 513294.0 686942.0 582201.0 True False 528981.6056135339 691049.2375735121 653373.391280753 624993.6857190729 681735.3989522544 676060.0099939164 600890.0767340548 551598.6047341195 517654.3486512042 545044.4337326469 0.9705293236202609 1.2678768826992242 1.1987525251954838 1.1466839160963571 1.250788663748939 1.240375954973122 1.1024607161272308 1.0120250214401558 0.949747060264672 1.0 19.056014322147796 1.8325376689185295 2.5087431518890018 0.9789735504011297 1.1852769051180176 0.5301971679769755 0.08043188674648442 0.20165900786145272 2.362603594124111 0.04538858774320211 0.021892467672853154 68.0045026756191 -1.8325376689185295 0.206303354716888 ANSWQLVET(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ANSWQLVETPEK 12 0 Q9Y2H0-3;Q9Y2H0;Q9Y2H0-1;A0A0B4J2C2;F8WF49 Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 1 ANSWQLVET(1)PEK 110.35 0.016763999999999998 93639000.0 131600.0 116990.0 89243.0 96016.0 91742.0 138330.0 142490.0 113230.0 176690.0 149550.0 True False 130891.4802221344 120883.94142805171 101807.6386859383 108171.61575525774 103424.79990256375 128767.5726937944 135597.2143353399 121679.79757028987 133147.1170246995 140005.59096380326 0.9349018087140163 0.8634222433253025 0.727168379384645 0.7726235431785305 0.7387190696498898 0.9197316464817872 0.9685128529645427 0.8691067030440855 0.9510128567588637 1.0 17.095124915140598 2.643397175468535 7.11642445534314 0.9315373161575358 0.8043083101595252 0.5138715726815928 0.06496246548880258 0.24583269450651918 15.975799171872197 0.022252928365729622 0.020955219510485762 439.94377343384383 -2.643397175468535 -0.12722900599801057 ANSWQLVET(ph)PEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANSWQLVETPEKR 13 1 Q9Y2H0-3;Q9Y2H0;Q9Y2H0-1;A0A0B4J2C2;F8WF49 Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 1 ANSWQLVET(1)PEKR;ANSWQLVET(1)PEKR 190.46 2.5747e-06 1272590000.0 1034370.0 796220.0 711170.0 714230.0 665030.0 1117560.0 1050680.0 935380.0 1501490.0 1218140.0 True False 1028801.0668493097 822721.7013748452 811296.5543995472 804651.4447683492 749717.6285583689 1040305.7076532693 999854.5944126248 1005182.8053633976 1131467.9084352024 1140397.262297878 0.9021427013743402 0.7214343006375491 0.711415733114617 0.7055887201508994 0.6574179484153642 0.9122309760346792 0.8767599041740397 0.8814321452666187 0.9921699620317544 1.0 20.12110505030158 2.720630717447464 23.701965261761146 0.9170277695865345 0.7351353950280087 0.6427315919348381 0.07141224882358117 281.1762286403082 371692.7198074231 0.023158396315652793 0.021884467977278367 525.5701816477375 -2.720630717447464 -0.1818923745585258 ANTIPIIGS(ph)PSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 ANTIPIIGSPSSK 13 0 E9PGM7;O94988-6;O94988-5;O94988-1;O94988 E9PGM7 FAM13A Protein FAM13A 1 ANTIPIIGS(0.694)PS(0.125)S(0.18)K;ANTIPIIGS(0.792)PS(0.18)S(0.027)K;ANTIPIIGS(0.901)PS(0.086)S(0.013)K;ANTIPIIGS(0.832)PS(0.14)S(0.028)K 144.08 4.3154e-05 1053830000.0 2342970.0 2081890.0 1954320.0 1814020.0 1913680.0 2476030.0 2381050.0 2145380.0 3018130.0 2309960.0 True False 2330355.7098484375 2151184.4501209185 2229471.2687460436 2043674.746004341 2157375.804729985 2304867.8740476794 2265869.5150056966 2305479.1496189 2274352.3023700053 2162536.375143744 1.0776030112758397 0.994750643201518 1.0309520313145486 0.9450360093334835 0.9976136491977315 1.0658169270768796 1.0477833071617508 1.0660995931065689 1.0517059174178418 1.0 21.044292969263424 2.742906672238589 24.91080184500046 1.0517300657464592 1.006033594227819 0.20256277736822859 0.035719065725867936 466.91508150565966 2676271.14352448 0.010867473403305723 0.011180183640435229 553.2312097578514 -2.742906672238589 -0.045696471518640314 ANVDKVFFDLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 ANVDKVFFDLMR 12 1 P11233;P11234;P11234-2;P11234-3 P11233;P11234-3 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B 0 77.42 0.025965 136390000.0 114870.0 155630.0 200150.0 175070.0 205960.0 227560.0 197280.0 137350.0 203210.0 196270.0 False True 114251.55268325676 160810.0504696785 228329.38026501302 197233.84404966867 232187.78517943827 211829.31281862073 187736.8127172146 147599.75444916784 153131.61837449297 183743.88056479918 0.6217978652244952 0.8751858836080648 1.2426502562325623 1.0734172122815928 1.2636490775405977 1.152850980220356 1.0217309667137855 0.8032907218214282 0.8333971063623505 1.0 17.48733667744253 -1.3228881585263175 8.463793625463222 1.0000000090498173 0.9947913021214142 0.0 0.1953866229914185 3.7606947379820095e-08 3.2061564259278267e-09 0.20234214572827885 0.047692412642563534 0.04754576521771914 1.3228881585263175 -0.0052087069284031395 ANVNEILDFFHGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANVNEILDFFHGYR 14 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 ; 243.78 1.4931e-17 546960000.0 459760.0 588750.0 506410.0 575430.0 512160.0 563890.0 529960.0 490860.0 603670.0 525740.0 False True 457284.70324413845 608346.1878431095 577708.1262053731 648279.3789998322 577380.5401898478 524909.6115542809 504323.81015619915 527490.4657365758 454903.61726357054 492186.8230913406 0.9290876589747203 1.236006652966026 1.1737578072019237 1.317140867218064 1.1730922346994586 1.0664844870437897 1.0246593092204872 1.071728134498805 0.9242498903290408 1.0 18.908846508674884 2.6072906605932906 3.0386653270370427 1.01944284838395 1.1788346606667914 0.36718937657520545 0.09853420596491465 0.2931405060081935 5.175025320000977 0.03419914001194789 0.031663815200403796 404.8467531373091 -2.6072906605932906 0.1593918122828415 ANVSS(ph)PHR ddPTM_BT-474_Trastuzumab_2h_R1 3 ANVSSPHR 8 0 Q5QPM7;Q5QPM9;H0Y555;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 ANVS(0.04)S(0.96)PHR;ANVS(0.251)S(0.749)PHR;ANVS(0.069)S(0.931)PHR 74.53 0.042734 760770000.0 1084850.0 1263600.0 1253840.0 1170580.0 996640.0 1022470.0 1157130.0 872260.0 1259020.0 1016840.0 True False 1079009.2881381654 1305658.1621376686 1430369.7734273495 1318775.3079777283 1123556.1964519103 951789.0555354871 1101155.201234135 937352.470446533 948751.3910036625 951944.4006394771 1.133479316032881 1.371569769474542 1.502577012340727 1.3853490887617275 1.1802750199456518 0.9998368128391893 1.1567431884618726 0.9846714470055796 0.9966458023875453 1.0 19.860517788238813 3.0274126690984837 3.207115992576752 1.0350167689787464 1.3602812642309914 0.7048658134871737 0.09740465301162164 0.13799791536179504 2.9436578758588774 0.031070007553425347 0.036475708767341596 1065.1546535560067 -3.0274126690984837 0.325264495252245 ANWEAQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ANWEAQQR 8 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7EPK1 SEPT7;DKFZp586I031 Septin-7 0 ; 89.355 0.032488 431200000.0 156312.0 240561.0 249106.0 221920.0 181211.0 182638.0 222487.0 152989.0 250705.0 197566.0 False True 155470.43355989584 248567.9274628048 284177.95953183324 250015.04924603 204287.14672825392 170012.66494360747 211724.4538271234 164405.81604240107 188922.1120248871 184957.1687352376 0.840575332240561 1.3439215639088027 1.5364527986402527 1.3517456552544953 1.1045105638521469 0.9192001916237004 1.1447215335038061 0.8888858818862254 1.0214370890123499 1.0 17.49683169324609 3.0595980562108425 4.393287466250601 0.993275216766183 1.2909832275379738 0.3447278658874303 0.17620515256223093 0.22495575332587064 8.889114692297333 0.05327649418814326 0.06358831793536247 1147.0914856788918 -3.0595980562108425 0.29770801077179077 APAASEGNHTDGAEEAAGSCAQAPS(ph)HSPPNKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPK 33 1 Q92560;F8W6N3 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 APAASEGNHTDGAEEAAGS(0.196)CAQAPS(0.551)HS(0.253)PPNKPK 97.352 6.212e-05 809110000.0 119980.0 94759.0 116730.0 106240.0 97247.0 138430.0 148240.0 137970.0 212830.0 150760.0 True False 119334.04101103109 97912.99603197478 133164.56936465134 119689.97310696724 109630.82902187228 128860.65992916892 141069.0648682071 148266.0219974643 160380.89827588882 141138.3677278702 0.8455109899040338 0.6937376250571458 0.943503680171552 0.8480328562233499 0.776761349778766 0.9130094247485275 0.9995089722179815 1.0505011811057428 1.1363380550434043 1.0 17.10675070479824 2.2602709647450223 1.8023917470801416 1.0669354450373354 0.82190083615693 0.7152309100431167 0.06741403266124449 0.18447715075447818 1.2053574478307014 0.033597437528837724 0.02171788075719862 182.083655950229 -2.2602709647450223 -0.2450346088804054 APAASEGNHTDGAEEAAGSCAQAPSHS(ph)PPNKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPK 33 1 Q92560;F8W6N3 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 APAASEGNHTDGAEEAAGSCAQAPS(0.057)HS(0.943)PPNKPK;APAASEGNHTDGAEEAAGSCAQAPS(0.196)HS(0.804)PPNKPK;APAASEGNHTDGAEEAAGSCAQAPS(0.004)HS(0.996)PPNKPK 256.34 1.2961999999999996e-59 1246490000.0 305778.0 268401.0 235020.0 226275.0 239418.0 335085.0 318174.0 297266.0 454581.0 318804.0 True False 304131.72522312944 277334.56503316906 268108.77316954004 254921.3917995014 269906.46315833536 311921.3626552455 302782.70807728585 319449.49840616185 342555.60362332314 298457.65577816404 1.0190113047365847 0.9292258371127352 0.8983142766785599 0.854129176666113 0.9043375431419657 1.0451109449411768 1.0144913431282074 1.0703344083208925 1.147752778296751 1.0 18.187166735467056 2.7018075438013276 5.389541335066209 1.0583641648521027 0.9163117616197537 0.6119802811823485 0.053507788192887686 0.13472978331051144 10.690597417549768 0.0180520534803218 0.017333085003331264 503.27753354854127 -2.7018075438013276 -0.14205240323234902 APAGPSLEETSVS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 APAGPSLEETSVSSPK 16 0 K7EIX2;Q6AI08;A0A087WXZ7 K7EIX2 HEATR6 HEAT repeat-containing protein 6 1 APAGPSLEETSVS(0.5)S(0.5)PK 190.34 9.1449e-10 279310000.0 268370.0 219160.0 173250.0 173780.0 183840.0 248270.0 259980.0 226400.0 375150.0 232940.0 True False 266925.1257387101 226454.60811498258 197642.0940840044 195780.53018193532 207250.93429495028 231107.67926471707 247403.7741799547 243295.1176359057 282699.30925245385 218073.5697700327 1.2240141068915107 1.0384321600906887 0.9063092528472199 0.8977728497240346 0.9503716315255658 1.059769322382485 1.1344968326095266 1.1156561425232328 1.296348335795904 1.0 17.734455402268253 2.3894298143913533 2.9968806523994784 1.144008227868988 0.9943472367523989 0.24506303187720269 0.1089998547073265 0.3497142924665069 6.373358834892802 0.04242713661892244 0.034436230927412555 245.14882408588687 -2.3894298143913533 -0.14966099111658915 APAGPSLEETSVSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 APAGPSLEETSVSSPK 16 0 K7EIX2;Q6AI08;A0A087WXZ7 K7EIX2 HEATR6 HEAT repeat-containing protein 6 1 APAGPSLEETSVS(0.039)S(0.961)PK;APAGPSLEETSVS(0.019)S(0.981)PK;APAGPSLEETSVS(0.001)S(0.999)PK;APAGPSLEETSVSS(1)PK;APAGPSLEETSVS(0.126)S(0.874)PK 297.56 1.0069e-45 2524180000.0 3277630.0 2547390.0 2120290.0 2062190.0 2104330.0 3069150.0 3034410.0 2793340.0 4479260.0 2827540.0 True False 3259983.6042589243 2632178.33622023 2418808.4021089417 2323263.042558895 2372303.952158903 2856986.8845019764 2887623.995728113 3001793.215093112 3375406.3920089207 2647083.976421218 1.2315376592873828 0.9943690338751021 0.9137633802532784 0.877668809623441 0.8961951994308054 1.0792959006780516 1.0908698104969448 1.133999994647488 1.2751414092167843 1.0 21.335972533120348 2.44967891597068 2.9321434590626563 1.135364826804208 0.9741249483224755 0.25849313737605206 0.1125166000695318 0.3396879050808766 6.001249206817682 0.04293441729886721 0.036126642550962304 281.6300005169202 -2.44967891597068 -0.1612398784817325 APAKES(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 2 APAKESPPK 9 1 A0A0J9YWL0;Q9Y4K1;A0A494C1M5 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 APAKES(1)PPK;APAKES(1)PPK 84.479 0.0093651 399140000.0 1474080.0 925990.0 725290.0 700890.0 710480.0 1323820.0 1375410.0 1157050.0 2218300.0 1336750.0 True False 1466143.7170656838 956811.0173772243 827404.5276663074 789622.602136129 800955.4166551149 1232307.439337082 1308876.1637235584 1243394.9463808518 1671629.6886971018 1251437.470550748 1.1715676984008199 0.7645695769011448 0.6611632999147556 0.6309724782242793 0.6400283158395604 0.9847135540817337 1.0458981727209526 0.9935733711358692 1.3357676496304929 1.0 20.25515477630723 2.551445767495635 4.324681649119161 1.0757309061213538 0.7598395874855967 0.43922880251869123 0.17092684487282844 0.22130337749514062 7.790969830272678 0.059086057727938665 0.054345040715520064 355.9965322088465 -2.551445767495635 -0.31589131863575715 APALS(ph)PTRPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 APALSPTRPPK 11 1 O94875-12;O94875-10;O94875-3;H7BXR3;O94875-5;O94875-4 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 APALS(0.996)PT(0.004)RPPK;APALS(0.912)PT(0.088)RPPK;APALS(0.916)PT(0.084)RPPK;APALS(0.998)PT(0.002)RPPK;APALS(0.997)PT(0.003)RPPK 101.32 0.0020415 1808700000.0 2891910.0 3022910.0 2736110.0 2564240.0 2564310.0 3447540.0 3376900.0 2835140.0 3658630.0 3353270.0 True False 2876340.277881409 3123525.73196232 3121330.5053055487 2888872.521082553 2890859.67864384 3209219.67443623 3213546.445989259 3046712.5433492134 2757009.659630292 3139261.437721119 0.916247447033092 0.9949874497326919 0.994288168484436 0.9202395462735559 0.9208725478889707 1.0222849348813383 1.0236632117910083 0.970518895540255 0.8782351245112244 1.0 21.58199375090357 2.7520876564171672 24.613734831039693 0.9803277010858539 0.9527455959885417 0.09007636063596458 0.046324176000221116 1938.197730869394 3526730.629563984 0.01482220671337961 0.015652173405000438 565.051011142583 -2.7520876564171672 -0.027582105097312182 APAPLGTVADSLRAS(ph)DGQLQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 APAPLGTVADSLRASDGQLQAK 22 1 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 APAPLGT(0.018)VADS(0.244)LRAS(0.737)DGQLQAK 47.507 0.093919 175740000.0 142650.0 134150.0 114990.0 121950.0 119530.0 145690.0 142920.0 135570.0 190640.0 159490.0 True False 141881.98824990483 138615.10165461246 131179.59248900245 137388.85749618476 134751.43699018392 135618.7932173708 136006.4135925804 145686.9218105113 143659.32644512254 149311.2116537411 0.9502433653738946 0.9283636514588511 0.8785649184417132 0.9201509784462484 0.9024870637489574 0.908296113301099 0.9108921700266214 0.9757266061731875 0.9621469469973526 1.0 17.18796297473816 1.7150584539222435 4.8272176873019275 0.9774913297461536 0.9127384865197052 0.7019602731475025 0.01940669743443551 0.092632912471095 5.137411554969012 0.010315300927785718 0.005129838655942256 51.88698715870994 -1.7150584539222435 -0.06475284322644836 APAPPQSGSCDHPLLLLEPGNLASS(ph)PSMS(ph)LASPQPCGLASHEEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 APAPPQSGSCDHPLLLLEPGNLASSPSMSLASPQPCGLASHEEHR 45 0 Q9C073;D6RJ87 Q9C073 FAM117A Protein FAM117A 2 APAPPQSGSCDHPLLLLEPGNLAS(0.478)S(0.508)PS(0.139)MS(0.477)LAS(0.397)PQPCGLAS(0.001)HEEHR 65.179 0.00066905 48237000.0 10687.0 11834.0 12387.0 11420.0 13064.0 14122.0 12979.0 9030.4 13557.0 11292.0 True False 10629.462379437316 12227.887536195933 14130.981930265883 12865.770829081022 14727.622963605469 13145.779379612255 12351.156185405132 9704.294303442053 10216.05900449291 10571.334892432415 1.0054985947939756 1.156702314383151 1.3367263523532562 1.2170431605842986 1.3931658691607973 1.2435306906247743 1.1683629656124903 0.9179819201819971 0.9663925235975798 1.0 13.367869943696215 1.8568507617812255 3.91936138679269 0.9565768583291575 1.2329409665202076 0.5850333272186964 0.09930625400779354 0.16304418197421774 4.022978984580731 0.05145560295961359 0.028327689730776102 71.9201793563854 -1.8568507617812255 0.27636410819105006 APAPPQSGSCDHPLLLLEPGNLASSPS(ph)MSLASPQPCGLASHEEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 APAPPQSGSCDHPLLLLEPGNLASSPSMSLASPQPCGLASHEEHR 45 0 Q9C073;D6RJ87 Q9C073 FAM117A Protein FAM117A 1 APAPPQSGSCDHPLLLLEPGNLAS(0.081)S(0.359)PS(0.439)MS(0.118)LAS(0.003)PQPCGLASHEEHR 83.654 3.8003e-05 159440000.0 16696.0 14870.0 21166.0 23438.0 24614.0 26514.0 22607.0 9407.3 23170.0 16536.0 True False 16606.110591099976 15364.938960895177 24145.98882182996 26405.248396847735 27748.44700139197 24681.149587242562 21513.413042873413 10109.320495301485 17460.063962093438 15480.658322818143 1.0727005431431131 0.9925249069186937 1.559752067277353 1.7056928617775249 1.7924591075362333 1.594321706000261 1.3896962644775337 0.6530291079676226 1.1278631436724946 1.0 13.91817920367197 1.85377057561159 6.653636452245962 0.9048667448028657 1.4648429363532358 0.4478470341611409 0.26296692535413346 0.22799978225393086 11.55440543951781 0.12783129654679073 0.07793776364084082 71.41189793686591 -1.85377057561159 0.5599761915503702 APDEETLIALLAHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 APDEETLIALLAHAK 15 0 J3KQ48;Q9Y3E5 J3KQ48 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial 0 ; 185.02 4.4011e-07 207953000.0 208768.0 290300.0 316090.0 265540.0 317690.0 412810.0 284840.0 258330.0 396770.0 333800.0 False True 207644.01628430546 299962.46000994416 360592.72449646745 299157.3367735706 358145.9384038442 384273.41635021445 271061.2010055322 277607.8963731605 298991.34994561126 312496.5982194423 0.6644680853085416 0.9598903211077633 1.1539092794963832 0.9573138987052123 1.1460794787671444 1.229688318336089 0.867405285529498 0.8883549387575024 0.9567827350736556 1.0 18.253480959383847 4.714638978264313 3.977516636099973 1.017080900345265 0.6399984375507805 0.47430683174983823 0.1129326480679455 0.2075384158534671 6.726200363259631 0.03001804448364262 0.2160619061709956 51836.89483417843 -4.714638978264313 -0.37708246279448454 APDWVDAEECHR ddPTM_BT-474_Trastuzumab_2h_R1 4 APDWVDAEECHR 12 0 O14964-2;O14964;I3L1P5 O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate 0 ;;; 213.38 9.328e-09 1222880000.0 1824580.0 2268060.0 1864810.0 2134610.0 1825340.0 1905080.0 1916690.0 1657200.0 2209120.0 1951400.0 False True 1814756.6640098935 2343551.0060287775 2127359.0387809114 2404851.407133504 2057786.2293621863 1773386.3036759458 1823972.3822331617 1780868.6790910917 1664711.976691405 1826859.9813224087 0.9933747975015831 1.2828301183390922 1.1644893755026482 1.3163851809774194 1.126406101398432 0.97072918658618 0.9984193648562181 0.9748249440561804 0.9112422373423333 1.0 20.80093463295961 2.845087961606129 3.714397777537042 0.9717152782197327 1.196592624200516 0.6057869609269242 0.0837615230925561 0.15249259301413912 3.8272872699983185 0.025175322066673674 0.02679361225380321 699.9837557138648 -2.845087961606129 0.22487734598078335 APEATVTLPVFIGNIAVNHAPVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 APEATVTLPVFIGNIAVNHAPVSPR 25 0 Q5T370;Q8N5I2 Q5T370 ARRDC1 Arrestin domain-containing protein 1 1 APEATVTLPVFIGNIAVNHAPVS(1)PR;APEATVTLPVFIGNIAVNHAPVS(1)PR 205.89 2.5873000000000004e-25 377310000.0 255130.0 305920.0 244860.0 267290.0 273620.0 258550.0 280280.0 267460.0 235910.0 251790.0 True False 253756.40842760797 316102.3622674545 279334.1596387264 301128.8865941389 308463.885127199 240677.04706123396 266721.78562642366 287419.2233343609 177773.141532044 235720.54663173566 1.076513744998435 1.3410047057174812 1.185022534650439 1.2774825567691823 1.3085999058415119 1.021027019071196 1.1315169145739383 1.2193218938330128 0.7541690534503026 1.0 17.84671799132687 1.2499633523217475 24.999907905513528 0.8770845296308494 1.198151998619511 0.5733091601075088 0.10970204124008498 125.69189093829532 275576.8127318631 0.07230961621739675 0.025899722217597947 17.78129357333219 -1.2499633523217475 0.3210674689886617 APELLFQPDLVGDESEGLHEVVAFAIHK ddPTM_BT-474_Trastuzumab_2h_R1 1 APELLFQPDLVGDESEGLHEVVAFAIHK 28 0 P42025 P42025 ACTR1B Beta-centractin 0 110.94 0.00035885 30059000.0 41728.0 53273.0 51104.0 55714.0 45079.0 55862.0 54081.0 39933.0 69540.0 61405.0 False True 41503.34108441663 55046.159600791434 58298.99899606911 62767.38668751491 50819.54344583365 52000.391425003545 51464.89542051738 42913.003235665274 52402.79878825968 57486.0803285346 0.7219720121327432 0.9575563212207382 1.0141411392616901 1.091871046500257 0.8840321544867645 0.9045736137830205 0.8952583847497346 0.7464938119004849 0.9115736972981316 1.0 15.810925043917683 2.599789214547477 2.017181443512644 0.8572116409524873 0.9501330972644574 0.005356938308313297 0.10797824078737128 0.7313139577828729 5.920982939284187 0.043010501909531325 0.03849533394466067 397.91399554735244 -2.599789214547477 0.09292145631197013 APELPNTSSS(ph)PSLK ddPTM_BT-474_Trastuzumab_2h_R1 4 APELPNTSSSPSLK 14 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 APELPNTSS(0.205)S(0.795)PSLK;APELPNTSS(0.063)S(0.937)PSLK;APELPNTSS(0.062)S(0.937)PSLK;APELPNTSS(0.004)S(0.995)PS(0.001)LK 279.91 3.2011e-33 1009260000.0 2880200.0 2488010.0 2149720.0 2155030.0 2119690.0 2710870.0 2784840.0 2697620.0 3677360.0 2862960.0 True False 2864693.3232203005 2570821.9088161946 2452381.890298794 2427856.5770397964 2389619.957113046 2523473.937601576 2650126.650078098 2898930.102636798 2771123.902099435 2680243.4416966275 1.0688183314448907 0.9591747782391111 0.9149847555438493 0.9058343504435302 0.8915682508303749 0.9415092294766275 0.9887634118789353 1.0815920888147903 1.0339075395126345 1.0 21.353932613357223 2.002173130876354 4.067101943354589 1.0460029277509386 0.9423767921136079 0.40149024833700586 0.04955863163630764 0.19526429550044025 7.382388841238516 0.022722290772808924 0.014464026084055094 100.50163587693666 -2.002173130876354 -0.1036261356373307 APEPHVEEDDDDELDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 APEPHVEEDDDDELDSK 17 0 P52566;F5H3P3;F5H2R5;F5H6Q0 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 0 288.42 4.4718e-37 722980000.0 1007900.0 638600.0 566420.0 515070.0 493110.0 808780.0 708120.0 681600.0 778350.0 636860.0 False True 1002473.5783882169 659855.4149581474 646167.0125891014 580277.8091886829 555904.6356080448 752870.9422633342 673865.5303189062 732464.4530946697 586536.0718556502 596215.0495567223 1.6813959646499066 1.106740622278389 1.0837817882482466 0.9732693088175342 0.932389472592737 1.2627506515024796 1.1302390485109626 1.2285239254514744 0.9837659621167424 1.0 19.185473266483143 4.7386336873734045 5.980957545136899 1.0908749747308175 1.6975431133993424 0.7501059219888623 0.10429193097997402 0.06839096550715464 11.762303298412036 0.02625091571949063 0.16894254325762265 54781.470692284885 -4.7386336873734045 0.6066681386685249 APEPQLS(ph)PGSDASEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 APEPQLSPGSDASEVR 16 0 Q8TE68;B4DKV7;Q8TE68-2;K7ELW3;Q8TE68-4 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 APEPQLS(0.999)PGS(0.001)DASEVR 134.83 3.2729e-05 0.0 73145.0 75407.0 46131.0 57854.0 68911.0 68238.0 74247.0 58355.0 83621.0 76696.0 True False 72751.19544717357 77916.87641050585 52625.84382216 65178.310468095755 77686.40738250286 63520.86767497392 70655.38895891634 62709.746420685806 63013.72501399293 71801.19561725087 1.0132309750799533 1.085175194377761 0.7329382661354483 0.9077607957329905 1.081965372786049 0.8846770186611276 0.9840419557295056 0.8733802533730962 0.8776138680182831 1.0 16.131720247228934 1.7389171147572116 24.999999999896634 0.905503850639746 0.9523803848981224 0.02489160492814102 0.10227452153124894 0.23925941759884567 14357.388783893399 0.047847998110193746 0.02653414986653428 54.817233606873984 -1.7389171147572116 0.046876534258376346 APETEPIDVAAHLQLLGESLSLIGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 APETEPIDVAAHLQLLGESLSLIGHR 26 0 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 0 ; 188.69 5.610399999999998e-18 144745000.0 81821.0 104347.0 103735.0 101155.0 107885.0 102850.0 104737.0 81345.0 125955.0 108517.0 False True 81380.48482716772 107820.1268159064 118339.98631921614 113961.21262834404 121623.51526550637 95740.221582858 99670.47117580533 87415.37696154042 94915.07796053002 101591.35215392204 0.8010572071515237 1.0613120558977016 1.1648627940291423 1.1217609590989626 1.1971837433685637 0.9424052299038314 0.9810920817826466 0.8604608080134275 0.9342830462254629 1.0 16.632418074030678 2.592650235694605 9.143665318708555 0.9307617331791688 1.0769540981215533 0.25404963825753213 0.10622750407669113 0.44247687776012906 32.38023962770176 0.03546330278771719 0.03340846141995177 391.42651006588466 -2.592650235694605 0.14619236494238452 APEVNLNAPDVDVHGPDWNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 APEVNLNAPDVDVHGPDWNLK 21 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 289.43 1.1024999999999998e-54 1157540000.0 1294580.0 1258630.0 1233040.0 1069220.0 1097190.0 1536550.0 1438850.0 1291280.0 1657210.0 1549800.0 False True 1287610.1251213606 1300522.7386920985 1406641.3142241915 1204583.1423704028 1236910.6429453667 1430331.91514964 1369247.3285592245 1387641.8705869806 1248812.8009762987 1450890.437149465 0.8874619972346789 0.8963617826630721 0.9695020920999321 0.8302371505990644 0.8525182958511325 0.985830410433874 0.9437289636075876 0.9564070691052677 0.860721643068939 1.0 20.468507148860404 2.739869771439662 24.999705871628287 0.9470375204524175 0.8891302774021324 0.2929002664652133 0.04814833826677878 171.02881988424363 3266005.9449778507 0.015140864127661005 0.015254528965222296 549.3761119485014 -2.739869771439662 -0.05790724305028516 APEYLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 APEYLHR 7 0 Q9UN86-2;Q9UN86;D6RB17;D6RAC7;D6RE13;D6RBW8;D6RGJ4;D6RBM9;D6REX8;D6RBR0;D6R9X5;D6R9A4 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ; 143.0 0.002451 620260000.0 448280.0 585180.0 533670.0 544030.0 502660.0 505700.0 523160.0 457010.0 610040.0 557610.0 False True 445866.51028859033 604657.3625512193 608806.0972572049 612904.1422193474 566670.7715007593 470742.14928975416 497852.7521347221 491114.4068497581 459703.8161171985 522022.85240606073 0.8541130110177027 1.1582967292797375 1.166244148989169 1.174094466160638 1.0855286677372675 0.9017654057098302 0.9536991529011881 0.9407910105585566 0.8806200992894718 1.0 18.99375343895467 2.780111076897286 6.892172924961864 0.9340914522341762 1.1014104518487111 0.408089924601576 0.09097530166482204 0.21650599433684792 29.231187589572336 0.02775598702249288 0.029205566165005904 602.7137188390374 -2.780111076897286 0.1673189996145349 APFDLFENKK ddPTM_BT-474_Trastuzumab_2h_R1 1 APFDLFENKK 10 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 87.713 0.020345 792710000.0 2079400.0 2306000.0 2148500.0 1841000.0 2156800.0 3106000.0 2273000.0 2020200.0 3264400.0 2479300.0 False True 2068204.7414430594 2382753.815993565 2450990.1249032277 2074070.4112380163 2431455.695644847 2891289.5307375453 2163046.3062967793 2170957.582367741 2459932.360718936 2321068.9513644786 0.891057002088297 1.0265760586702193 1.055974715211443 0.8935841436415493 1.047558580375424 1.2456715381237826 0.9319181599603911 0.9353266222838869 1.0598273520796633 1.0 21.146357950392623 4.7414725802999005 23.44174769335957 1.0167145403445894 0.8910568943725101 0.14963807544878627 0.09280349045496313 243.13813136148786 1957035.6022408032 0.022978209908686476 0.15835280491742823 55140.738751963974 -4.7414725802999005 -0.1256576459720793 APFDLFENR ddPTM_BT-474_Trastuzumab_2h_R1 2 APFDLFENR 9 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 140.14 0.00025547 360240000.0 120362.0 157802.0 145694.0 157289.0 114434.0 125171.0 126589.0 108390.0 174119.0 129073.0 False True 119713.98436547542 163054.34417667662 166206.44880505026 177201.77127279533 129006.49159654228 116518.2233908402 120465.40645305898 116478.61219326773 131209.7055250646 120835.450635045 0.9907190624632444 1.3493916174413405 1.3754775434821498 1.4664717211838065 1.0676212230645459 0.9642718488529995 0.9969376190510213 0.9639440377895716 1.0858543981546658 1.0 16.882684248241166 3.0834885180755824 6.5443422318532525 0.9984107437821654 1.3038989369312062 0.5778694313309986 0.11915434819164893 0.14613504578984415 9.342398602817388 0.034779126717600195 0.04169186666285794 1211.96064640489 -3.0834885180755824 0.30548819314904074 APGASPGNPLSPS(ph)LSDKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 APGASPGNPLSPSLSDKDR 19 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 APGASPGNPLS(0.09)PS(0.595)LS(0.315)DKDR 113.67 0.00010443 716490000.0 240380.0 252470.0 253600.0 201730.0 216700.0 284640.0 245780.0 233480.0 352650.0 251430.0 True False 239085.82078872892 260873.31132866238 289304.6756692845 227268.99731615704 244295.46051847076 264963.5067704882 233890.68242922227 250903.46318741702 265744.1327679005 235383.5221399473 1.0157287928021588 1.1082904570251104 1.2290778599925885 0.9655263684134789 1.0378613519650914 1.1256671850332587 0.9936578410538123 1.065934696304877 1.1289835853926184 1.0 17.844653803483293 3.7227252046176575 24.98682154877932 1.0489132817343911 1.1167581999367193 0.1849534459714266 0.06928758831020665 1383.099856981539 2182405.5175167755 0.018220999694917923 0.028316253796205178 5281.109892199073 -3.7227252046176575 0.06784491820232819 APGFGDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 APGFGDNR 8 0 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 91.626 0.02874 901920000.0 678180.0 784040.0 783540.0 728210.0 834250.0 1128310.0 672570.0 600710.0 838720.0 746000.0 False True 674528.754232882 810136.2974378106 893855.6213482312 820401.3113349465 940486.7925128486 1050312.5854560484 640035.219633095 645538.0305435734 632028.6942722059 698389.6413172679 0.9658344201105552 1.160006176365634 1.2798809840052683 1.17470429513752 1.3466505470197827 1.5039063057622115 0.9164443195719402 0.9243236044079801 0.9049800525106655 1.0 19.41367263516385 2.198885577705966 24.99751423581565 0.9290192172954914 1.2388269179356655 0.5566589882798041 0.1319940181552211 119.67311776281767 75400.13671558045 0.051770866088803526 0.038235860773956326 158.08314873610925 -2.198885577705966 0.30980770064017404 APGFGDNRK ddPTM_BT-474_Trastuzumab_2h_R1 4 APGFGDNRK 9 1 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ;;; 104.2 0.0052892 3395230000.0 1744560.0 1883540.0 1964350.0 1771790.0 2049170.0 3052260.0 1888710.0 1625720.0 2683140.0 2224320.0 False True 1735167.4827988357 1946232.4902760263 2240913.4055637186 1996098.4323342766 2310119.6531178346 2841264.4504471985 1797345.881727139 1747039.4816388898 2021916.0992339842 2082361.9932638376 0.8332688977285747 0.9346273590143442 1.076140177746604 0.9585741762437981 1.109374671930607 1.3644430985766685 0.8631284510288376 0.8389701153259274 0.9709724369608225 1.0 20.989789454719862 -3.193427814082705 1.8579432797730262 2.4558418831369275 0.9912160601694143 0.0 0.15155267620449908 13477785.174743375 1002399.8368005374 82498915.33772823 0.040678776923549084 0.0006405782459327824 3.193427814082705 -1.464625822967513 APGLITPGS(ph)PPPAQQNQYVHISSSPQNTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 APGLITPGSPPPAQQNQYVHISSSPQNTGR 30 0 P54253 P54253 ATXN1 Ataxin-1 1 APGLIT(0.027)PGS(0.973)PPPAQQNQYVHISSSPQNTGR 115.71 7.590300000000001e-05 313170000.0 38628.0 73855.0 93825.0 112940.0 109310.0 87673.0 89196.0 82125.0 56630.0 92705.0 True False 38420.03113997426 76313.21902870978 107034.74445848052 127238.19242000076 123229.98056886974 81612.3718700429 84881.2487181906 88253.58452230014 42674.295303122635 86788.48753125631 0.44268580122608464 0.8793011746082805 1.2332827487048055 1.4660722411388578 1.4198885598103004 0.9403594208350587 0.9780242879289857 1.016881236587009 0.4917045626328465 1.0 16.405216061814773 1.3978248406186877 7.527834636100623 0.7427334379270214 1.0689711450042791 0.13893028922969164 0.29839676609110705 0.449502547927856 34.87936810128179 0.21019744756338574 0.07765397657065201 24.99337127288502 -1.3978248406186877 0.32623770707725774 APGPRDT(ph)DDDEEEPDPYGFIVQTAEIAEIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 APGPRDTDDDEEEPDPYGFIVQTAEIAEIAR 31 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 APGPRDT(0.999)DDDEEEPDPY(0.001)GFIVQTAEIAEIAR 66.381 0.0095903 9429400.0 1967.0 1753.7 1874.3 1220.3 1410.2 1935.8 2948.3 2034.0 1222.6 3472.2 True False 1956.4098905542448 1812.0708443659635 2138.1851482923516 1374.7898548798214 1589.7806110897452 1801.9827023830476 2805.679465400259 2185.787408442721 921.3066120006663 3250.601223300022 0.6018609346882884 0.5574571348146922 0.6577814383893138 0.4229340237201196 0.4890727905023657 0.5543536652440155 0.8631263180759906 0.6724255786207148 0.28342652595982 1.0 11.666490864850577 2.4337660263553516 24.996977393860384 0.6866903069595637 0.5434455445532539 0.15151635722803725 0.18063183314493667 288.5725387641492 166378.43462986205 0.061069507838982115 0.051094451231247257 271.4976197012981 -2.4337660263553516 -0.1432447624063098 APGS(ph)PAAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 APGSPAAPR 9 0 Q5SPY9;Q9NQX5 Q5SPY9 NPDC1 Neural proliferation differentiation and control protein 1 1 APGS(1)PAAPR 93.258 0.009987200000000002 368370000.0 106100.0 117070.0 137620.0 128890.0 110100.0 101350.0 105790.0 117730.0 131330.0 120430.0 True False 105528.76938881815 120966.60417969046 156995.69978551628 145207.46078461045 124120.5823861729 94343.91305223787 100672.5335429547 126515.6104208268 98965.48123183999 112744.05429468959 0.9360029675089369 1.0729311176224765 1.3924964892176226 1.287938966653339 1.1009057919963339 0.8367972363814631 0.8929298682112101 1.1221488460060272 0.8777889162400062 1.0 16.78269182751176 2.990017202434484 22.568483672509906 0.9635731762432242 1.1826488603074128 0.3852062963806665 0.13523643187008247 153.68990563572126 347456.37346278795 0.043163468183951274 0.048753099570755944 977.2759301563959 -2.990017202434484 0.21907568406418854 APGSAGHYELPWVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 APGSAGHYELPWVEK 15 0 P35250;P35250-2;H7C5P1;H7C5Q7;F8WC37;H7C5A0;H7C5G4 P35250 RFC2 Replication factor C subunit 2 0 96.673 0.0036089 221890000.0 178890.0 250740.0 237180.0 244340.0 251430.0 276260.0 278160.0 217110.0 275040.0 275140.0 False True 177926.87611654765 259085.72932446946 270572.8823944832 275273.41894725553 283448.12015763356 257162.79644608998 264704.33812561 233311.85066224143 207260.07734718075 257580.32964079457 0.690762669512355 1.0058443891494906 1.050440780054157 1.0686895980416464 1.1004261099941621 0.9983790175465383 1.0276574243644696 0.9057828716486369 0.8046424881752916 1.0 17.974662899359764 -0.2824610040660738 13.230049488950163 0.999999902292747 0.9718777571107186 0.0023747522625608974 0.12181898122163558 0.0 0.0 0.11827370980890549 0.027877380747322326 0.5218419590847726 0.2824610040660738 -0.02812214518202849 APGTPHSHTKPYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 APGTPHSHTKPYVR 14 1 J3QQ67;Q07020;F8VYV2;H0YHA7;Q07020-2;F8VUA6 J3QQ67 RPL18 60S ribosomal protein L18 0 ; 244.58 8.646000000000002e-18 5076600000.0 1906440.0 2603650.0 2563800.0 2423730.0 2400330.0 2284230.0 2339200.0 1421820.0 2250700.0 2210260.0 False True 1896175.938865397 2690310.916310337 2924760.7550509134 2730573.9694893667 2705997.7976294453 2126326.5565990414 2226043.95938822 1527923.4282556686 1696045.1428348573 2069199.3145012124 0.9163814841696275 1.300170021059013 1.4134746394674584 1.3196282979378335 1.3077511570129896 1.0276083805448195 1.07579967951266 0.7384128815178831 0.8196625288577842 1.0 20.98064118803248 2.271732069750996 1.6401798600870097 0.8385139808197344 1.263508504085896 0.5488536194960879 0.14837009208919016 0.25700055710367914 1.382163491531703 0.07875641813712346 0.04994500131703993 186.95284122450656 -2.271732069750996 0.4249945232661616 APHVAGGPPS(ph)PEVGS(ph)PLLCR ddPTM_BT-474_Trastuzumab_2h_R1 1 APHVAGGPPSPEVGSPLLCR 20 0 A0A087WXR4;Q8NG45;Q8NG42;P06401-5;P06401;Q8NG44 A0A087WXR4 PGR;PR Progesterone receptor 2 APHVAGGPPS(1)PEVGS(1)PLLCR 136.34 2.9399e-06 386480000.0 210410.0 239530.0 252130.0 264240.0 249250.0 284580.0 250090.0 247410.0 301640.0 271420.0 True False 209277.1759387487 247502.61125105704 287627.71244675346 297692.75690686237 280990.5100795056 264907.6544292629 237992.19126342345 265872.9905225236 227304.8637689195 254097.74322564725 0.823608951744619 0.9740449014191617 1.1319569737041328 1.1715678900874822 1.1058363073692343 1.042542334561453 0.9366167060054463 1.0463414084178604 0.8945567988262895 1.0 17.955024036559188 -0.6165969943724336 7.596085687757661 1.000001600129776 1.0229984389889248 0.0 0.10384868308664826 0.0 0.0 0.10380772449697509 0.024467715310452 0.24177033130991774 0.6165969943724336 0.022996838859148827 APHVAGGPPS(ph)PEVGSPLLCR ddPTM_BT-474_Trastuzumab_2h_R1 7 APHVAGGPPSPEVGSPLLCR 20 0 A0A087WXR4;Q8NG45;Q8NG42;P06401-5;P06401;Q8NG44 A0A087WXR4 PGR;PR Progesterone receptor 1 APHVAGGPPS(1)PEVGSPLLCR;APHVAGGPPS(1)PEVGSPLLCR;APHVAGGPPS(1)PEVGSPLLCR;APHVAGGPPS(1)PEVGSPLLCR;APHVAGGPPS(1)PEVGSPLLCR;APHVAGGPPS(1)PEVGSPLLCR;APHVAGGPPS(1)PEVGSPLLCR 304.22 2.4862999999999995e-55 33582810000.0 5334420.0 6036350.0 5646930.0 5609360.0 5555940.0 6998230.0 6355250.0 5805500.0 6722230.0 7163200.0 True False 5305700.07542978 6237266.260699372 6441968.660004549 6319504.400859358 6263456.026363612 6514458.832161438 6047822.27808738 6238735.8897316735 5065626.489767089 6706038.443275939 0.7911824723805065 0.9300970033885506 0.9606220892550699 0.9423603002449004 0.9340024038549767 0.9714317755952331 0.9018472424880678 0.9303161534940463 0.7553828586900406 1.0 22.677029322924792 4.739828903726468 23.73017021105085 0.9254458067085043 0.7911823821633813 0.2938596232090217 0.06228432911320943 65.94088665965394 1233479.910104552 0.014114767057382788 0.08756733785162286 54932.44173265865 -4.739828903726468 -0.13426342454512297 APIDTS(ph)DVEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 APIDTSDVEEK 11 0 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 APIDT(0.038)S(0.962)DVEEK;APIDT(0.016)S(0.984)DVEEK;APIDT(0.049)S(0.951)DVEEK 172.33 1.4141e-05 2646910000.0 4242300.0 3547000.0 2958710.0 2686500.0 3070660.0 3869600.0 3542300.0 3630100.0 5150800.0 3881200.0 True False 4219459.928163839 3665059.75079322 3375270.65043166 3026610.62454695 3461690.349772259 3602103.6600586027 3370945.416099898 3900996.4952742998 3881454.3571838983 3633498.493137505 1.1612664587952972 1.008686189829258 0.9289313472419066 0.8329742341336406 0.952715504440215 0.991359613018088 0.9277409698852266 1.0736199568107738 1.0682416311757665 1.0 21.79292787734074 1.7135547613361095 8.900814145575113 1.0521157845490168 0.9664306355699706 0.1517694777106281 0.08047124869262264 0.1974932191624818 38.11361762699074 0.040682176938344125 0.021758739840187634 51.70764533913614 -1.7135547613361095 -0.08568514897904622 APIRPDIVNFVHTNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 APIRPDIVNFVHTNLR 16 1 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 ; 266.71 1.9081e-27 17926400000.0 5345200.0 6329900.0 6354500.0 6522700.0 6120700.0 6434300.0 6048600.0 5682800.0 6904000.0 6237500.0 False True 5316422.037107543 6540586.89499464 7249158.365695854 7348473.1512124995 6900134.864768829 5989511.985713008 5756006.110104132 6106879.392673694 5202601.708860298 5839417.409807581 0.9104370631526284 1.1200752465493236 1.2414180828245887 1.258425735908241 1.1816478221234403 1.0257036901752108 0.9857158182315661 1.0458028539656878 0.8909453364512492 1.0 22.477393010020595 2.6295628880083353 4.417507894511547 0.9927869056098368 1.1527785443525722 0.38599453189370236 0.09653530254083982 0.2593736824738431 8.378582243960784 0.033822868407967874 0.03175941824465806 426.1503878180084 -2.6295628880083353 0.15999163874273536 APIRPDIVNFVHTNLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 APIRPDIVNFVHTNLRK 17 2 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 ; 130.56 1.7950999999999998e-05 1015780000.0 457620.0 618320.0 563290.0 645630.0 607870.0 604460.0 684050.0 578320.0 1029130.0 763220.0 False True 455156.22476636217 638900.4074176671 642596.335795549 727366.691802064 685278.6413722337 562675.1029457882 650959.8881752356 621477.1750494569 775514.7011354853 714510.6461744834 0.6370181147100964 0.8941789892681987 0.8993516600991653 1.0179927978630023 0.9590880766315256 0.7874971576118168 0.9110569473813989 0.8697941428540902 1.0853787907676673 1.0 19.446595982005217 4.788169355045997 2.6166407110518524 0.9295836404151754 0.5542741727731372 0.5634390387637435 0.07936651811943361 0.45649126929594797 3.62368528944128 0.0195723873041871 0.3954710322167318 61400.13910336757 -4.788169355045997 -0.3753094676420382 APKPDGPGGGPGGSHMGGNYGDDR ddPTM_BT-474_Trastuzumab_2h_R1 11 APKPDGPGGGPGGSHMGGNYGDDR 24 1 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 ;;;;;;;;;; 259.44 3.4051e-44 44208080000.0 12301110.0 11589870.0 11215370.0 10652220.0 10047500.0 11618700.0 12106910.0 13365320.0 14295690.0 12318340.0 False True 12234882.190541796 11975631.816725625 12794396.610256419 12000789.959803268 11326989.568801735 10815526.616477903 11521252.510412462 14362708.046119807 10772708.751931783 11532172.994938543 1.060934673448939 1.0384540556217563 1.1094523656445203 1.040635616988264 0.9822077394930805 0.937856778702923 0.9990530419088515 1.2454468080233954 0.9341438735492359 1.0 23.459161048289143 -0.3277406671866867 6.791221728081619 0.9999999929126049 1.0490377222259117 0.005073341099305906 0.08664705330065245 0.0 0.0 0.08846856605509744 0.020852240837775173 0.47017478302463495 0.3277406671866867 0.049037729313306855 APKPDGPGGGPGGSHMGGNYGDDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 APKPDGPGGGPGGSHMGGNYGDDRR 25 2 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 ; 246.77 3.701e-39 341210000.0 403420.0 400420.0 373940.0 331260.0 286240.0 401380.0 369920.0 400020.0 464130.0 436350.0 False True 401248.031544176 413747.7376409987 426587.5016552535 373197.4820351471 322690.96732259885 373633.54534688935 352025.5563683693 429871.52366040146 349751.38052336784 408501.76942196983 0.9822430686455584 1.0128419718388293 1.0442733265485606 0.9135761702164025 0.7899377468528636 0.9146436400399953 0.8617479353063406 1.05231251328157 0.8561808214888914 1.0 18.63998280184271 3.7271938677576313 23.85600145256012 0.9151223402435732 1.0130917045737398 0.2976151799105533 0.07067254709989552 513.8193080020649 1078380.5983627043 0.0197309004906316 0.030885659490275393 5335.730277364275 -3.7271938677576313 0.09796936433016656 APKPEDIDEEDDDVPDLVENFDEASK ddPTM_BT-474_Trastuzumab_2h_R1 5 APKPEDIDEEDDDVPDLVENFDEASK 26 1 Q96K17;Q96K17-2 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 0 ;;;; 237.13 5.289300000000001e-45 1869290000.0 1663210.0 1070145.0 965272.0 804102.0 881988.0 1314810.0 1321400.0 1344270.0 1985430.0 1241680.0 False True 1654255.4621600048 1105764.129408687 1101173.9073053687 905901.2307535644 994303.943847556 1223920.2794298262 1257478.8337617973 1444586.2534647465 1496147.3798989695 1162434.9193442694 1.4230951209665756 0.9512482040994169 0.9472994048789776 0.7793135045053396 0.8553631066145567 1.0528935934927357 1.0817627833058752 1.2427244135780426 1.2870805539315247 1.0 20.148718516368447 2.112757094634147 2.420461945153554 1.197813754414748 0.9765693017808351 0.15643650535834053 0.17572615733105973 0.4476535750211298 5.1670461879408185 0.08652698976558316 0.053326961814883396 129.64539481490934 -2.112757094634147 -0.2212444526339129 APKPEDIDEEDDDVPDLVENFDEASKNEAN ddPTM_BT-474_Trastuzumab_2h_R1 1 APKPEDIDEEDDDVPDLVENFDEASKNEAN 30 2 Q96K17;Q96K17-2 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 0 88.51799999999999 0.00065931 54649000.0 87965.0 67200.0 55489.0 50152.0 53246.0 76111.0 78840.0 81788.0 118380.0 75824.0 False True 87491.40621383023 69436.71137674208 63301.36888096588 56501.23805779958 60026.56248623211 70849.62571602239 75026.20800195246 87891.43587104871 89206.83521073034 70984.8474038076 1.232536370982425 0.978190612733747 0.8917588921599967 0.7959619570129396 0.8456250126842185 0.9980950626403974 1.0569327222069662 1.2381717942008883 1.2567025002288774 1.0 16.115223475879123 2.0746393400715126 2.5956010506659406 1.1866418214718841 0.9403784971819595 0.3376124158784901 0.12841469030003352 0.2868268905298226 3.7761494219883525 0.06432558814580956 0.039051992993386936 118.75156452646532 -2.0746393400715126 -0.2462633242899246 APKPPTDGSTS(ph)PTSTPSEDQEALGK ddPTM_BT-474_Trastuzumab_2h_R1 4 APKPPTDGSTSPTSTPSEDQEALGK 25 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F6SRV7;Q8NHM5-5;F8WBN2 Q8NHM5-4;F8WBN2 KDM2B Lysine-specific demethylase 2B 1 APKPPTDGS(0.004)T(0.025)S(0.956)PT(0.006)S(0.008)T(0.002)PSEDQEALGK;APKPPTDGS(0.007)T(0.385)S(0.597)PT(0.011)STPSEDQEALGK;APKPPTDGS(0.01)T(0.094)S(0.878)PT(0.016)S(0.002)TPSEDQEALGK;APKPPTDGS(0.013)T(0.071)S(0.896)PT(0.019)S(0.001)TPSEDQEALGK 221.59 6.7722e-34 3240660000.0 2010032.0 1568404.0 1472791.0 1369353.0 1383055.0 2040668.0 2059152.0 1897537.0 2723720.0 2024900.0 True False 1999210.2110475497 1620607.3790197594 1680147.1710711413 1542712.9493970736 1559178.8562407654 1899601.424375767 1959542.9510354684 2039140.8464376475 2052495.7019781242 1895669.1483958892 1.054619796254677 0.8548999071863956 0.8863082318414465 0.8138091769349697 0.8224952426746719 1.0020743471946068 1.0336945941719995 1.0756839336458917 1.0827288631641978 1.0 20.854275761609234 2.5480579912766212 4.025961633848647 1.0532334736683757 0.8811192618265126 0.5752253839814858 0.06610844512532993 0.1585397109490213 4.944712871104227 0.022726580662196964 0.02078230494777248 353.23033343612104 -2.5480579912766212 -0.17211421184186315 APLATGEDDDDEVPDLVENFDEASK ddPTM_BT-474_Trastuzumab_2h_R1 1 APLATGEDDDDEVPDLVENFDEASK 25 0 P20290-2;P20290 P20290-2;P20290 BTF3 Transcription factor BTF3 0 162.72 1.9013e-11 69118000.0 55191.0 43922.0 48842.0 39424.0 39084.0 50535.0 43780.0 47658.0 65192.0 50706.0 False True 54893.857788296555 45383.91721859031 55718.52905772554 44415.07435776623 44061.11573098257 47041.634396594316 41662.19414415878 51214.481962420425 49126.30512804465 47469.899668409314 1.156392959996665 0.956056733542936 1.173765469211758 0.9356471083364004 0.9281906226632443 0.9909781719614629 0.8776549863214583 1.0788832991046553 1.0348938057844193 1.0 15.534725380063765 7.999965027400734 0.7650296502167656 0.9889720285115469 30.12742828402341 0.24606202161642265 0.0808109292087534 629.5833265578865 2.5242084224780768 0.027596925945618068 31677.26712125448 99991947.5856509 -7.999965027400734 29.138456255511862 APLATGEDDDDEVPDLVENFDEASKNEAN ddPTM_BT-474_Trastuzumab_2h_R1 2 APLATGEDDDDEVPDLVENFDEASKNEAN 29 1 P20290-2;P20290 P20290-2;P20290 BTF3 Transcription factor BTF3 0 ; 224.83 1.1838e-34 325950000.0 298090.0 276580.0 271320.0 266540.0 277780.0 369110.0 342600.0 330110.0 486650.0 375980.0 False True 296485.11656091275 285785.7981038596 309519.4976442832 300283.9366710383 313153.6364689473 343594.29449147964 326027.1291409045 354744.4844646146 366721.62827590725 351984.6345073272 0.8423240320586802 0.8119269140934913 0.8793551402535442 0.8531166057613441 0.8896798489720107 0.9761627662309988 0.9262538678634213 1.0078408251006477 1.0418682872029552 1.0 18.42515292544732 2.6491766495354234 0.6982510621956086 1.0226458697010214 0.8284371602603976 0.8729545541677317 0.02687191698223414 0.22753879349711026 0.23419757629737467 0.019764963273071014 0.018257821754592514 445.8375562091467 -2.6491766495354234 -0.19420870944062385 APLDIPIPDPPPKDDEMETDKQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 APLDIPIPDPPPKDDEMETDKQEK 24 2 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 ;;; 110.72 0.0010787 1251930000.0 4750560.0 2491470.0 2224150.0 2068930.0 2013100.0 3818530.0 3630830.0 3441660.0 6998890.0 3401230.0 False True 4724983.512796833 2574397.0728245783 2537290.987341638 2330856.325867828 2269456.352421479 3554564.008952757 3455192.8817824563 3698494.1455953685 5274107.339821152 3184160.589460496 1.48390239124133 0.8085010163575851 0.7968476827896236 0.7320159459239942 0.7127330072275033 1.1163268651456488 1.0851189142969333 1.1615287739686577 1.6563572067559458 1.0 21.60248166769816 2.024639886207313 1.5125951268972748 1.3034934719725197 0.897410742623881 0.250244810894353 0.26170590411274697 0.5172355934862137 2.2137949177198863 0.1703842385004942 0.08351098510738247 105.8375763822871 -2.024639886207313 -0.40608272934863876 APLDIPVPDPVKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 APLDIPVPDPVKEK 14 1 Q06323;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 66.285 0.050891000000000006 401710000.0 774500.0 728050.0 604980.0 612920.0 624710.0 847760.0 857600.0 797560.0 1165400.0 893730.0 False True 770330.1780550396 752282.7041344803 690155.9254195733 690515.6091558969 704263.115553734 789156.346612384 816114.6116498535 857077.9771276177 878202.7855599351 836691.3862392503 0.9206861582709842 0.899116109603842 0.8248631894272 0.8252930776060904 0.84172387470038 0.9431868901620629 0.9754069721192123 1.0243657234001187 1.0496137524580835 1.0 19.674336057015665 2.345848094869975 1.8315321615933111 1.0234132077893896 0.8605431801883612 0.8256872774759138 0.032660940596616964 0.14490010158543953 0.99004452488092 0.01673138419121093 0.01183048671959852 221.74206869570105 -2.345848094869975 -0.16287002760102842 APLDLDKYVEIAR ddPTM_BT-474_Trastuzumab_2h_R1 3 APLDLDKYVEIAR 13 1 O00743;O00743-2;O00743-3 O00743 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed 0 ;; 199.31 1.0838e-07 1850944000.0 1683423.0 1829481.0 1644318.0 1593932.0 1654610.0 1928467.0 1913908.0 1720619.0 2553820.0 2048710.0 False True 1674359.63761388 1890374.1691403806 1875823.6817317326 1795723.627770471 1865314.775858179 1795156.6154130227 1821324.9582014321 1849020.326906245 1924465.2804347612 1917959.5738111252 0.8729900569733102 0.9856173169406639 0.9780308758042978 0.9362677150708851 0.9725516644501858 0.93597208195891 0.9496159267748938 0.9640559436985979 1.0033919936126228 1.0 20.87114088129812 7.9999999999242934 0.044708156282303624 1.1037493523297035 0.7087671477669566 0.31503819566910973 0.030360515457712952 862.6077399601007 2.9238448821107648 6.585096095072224 24.56430360450615 99999999.98256792 -7.9999999999242934 -0.3949822045627469 APLKPYPVS(ph)PSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 APLKPYPVSPSDK 13 1 A0A0A0MSX9;P41252;J3KR24;Q5TCC6 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 1 APLKPYPVS(0.867)PS(0.133)DK;APLKPYPVS(0.989)PS(0.011)DK 119.56 0.00027419 1089800000.0 1004770.0 657090.0 543622.0 515709.0 542906.0 805140.0 607250.0 558100.0 1150270.0 768300.0 True False 999360.429960441 678960.8434307065 620159.25235287 580997.706523165 612041.8610440288 749482.5668956952 577874.997579727 599748.2559743775 866801.371328321 719266.436225277 1.3894161879777154 0.9439629172659648 0.8622107485057646 0.8077642404284165 0.8509250956516687 1.0420096492045325 0.8034227213665428 0.8338332303143005 1.2051186148450217 1.0 19.456166758339872 4.736668769027997 4.403880448994373 0.9065660291687947 1.4227261312416393 0.5627865283606208 0.12124202632073584 0.1356295070342411 6.4724665575076905 0.028276726247671805 0.21818829681185112 54534.17770846279 -4.736668769027997 0.5161601020728446 APLKPYPVS(ph)PSDKVLIQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 APLKPYPVSPSDKVLIQEK 19 2 A0A0A0MSX9;P41252;J3KR24;Q5TCC6 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 1 APLKPYPVS(0.983)PS(0.017)DKVLIQEK;APLKPYPVS(0.5)PS(0.5)DKVLIQEK 187.29 9.7544e-15 1846460000.0 2238160.0 2009350.0 1851050.0 1855980.0 1989670.0 2236070.0 2584600.0 2454260.0 3708500.0 2649500.0 True False 2226109.995242954 2076230.000072273 2111661.7503849724 2090946.877702083 2243042.680801966 2081495.7440425965 2459573.0238691834 2637409.3436797634 2794589.866354054 2480406.6416489254 0.8974778400702396 0.8370522660316844 0.851336919893579 0.8429855180165389 0.9043044165172996 0.8391752017962907 0.9916007248852179 1.0632971624065906 1.1266660149306267 1.0 21.242145226951944 2.049965571543599 2.7798639512690992 1.068142180566476 0.860900226294493 0.8605672011907388 0.036817175082565455 0.08631352563671571 1.3034044114401058 0.01686072812868102 0.010204118913135992 112.19295104311007 -2.049965571543599 -0.2072419542719829 APLS(ph)PSLLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 APLSPSLLIR 10 0 O75807 O75807 PPP1R15A Protein phosphatase 1 regulatory subunit 15A 1 APLS(0.5)PS(0.5)LLIR;APLS(0.817)PS(0.183)LLIR 119.94 0.00065706 100176000.0 121904.0 161368.0 133464.0 153452.0 152159.0 152220.0 136466.0 135987.0 169403.0 148337.0 True False 121247.68240880773 166739.0363309839 152254.5711101158 172879.00746621197 171535.54673294877 141697.38968733733 129864.61822925464 146135.04046799408 127655.90053390205 138870.00566230484 0.8731020196229419 1.2006843056984469 1.0963819752435142 1.2448981091468234 1.2352238765661023 1.0203599331010897 0.9351523938513481 1.0523153633575553 0.9192474640227745 1.0 17.083375501725058 2.5522241932835525 7.291950811198902 0.9858560331611355 1.1380935067979872 0.32908723530072614 0.1040971862021752 0.31928502869941877 27.18900666981527 0.033352625310999265 0.03130971494822689 356.6351895993329 -2.5522241932835525 0.1522374736368517 APNYPTEGNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 APNYPTEGNHR 11 0 Q9GZT8-2;Q9GZT8;B8ZZI0;E7EXA3;Q6X734;Q9GZT8-3 Q9GZT8-2 NIF3L1 NIF3-like protein 1 0 ; 86.463 0.014452 406300000.0 297260.0 366430.0 376450.0 376200.0 343490.0 337670.0 354710.0 304760.0 395870.0 354790.0 False True 295659.58518869075 378626.4010383876 429450.88783794205 423826.8814273453 387231.41547526355 314327.6676896807 337551.3221762125 327502.73873992317 298313.14288622915 332146.9984489991 0.8901467921411581 1.1399362415027978 1.2929542938618002 1.2760220125620783 1.1658434888271996 0.9463510709338699 1.0162708793168374 0.9860174569369501 0.8981358985004795 1.0 18.34146235154406 2.74399909918099 23.793112603135356 0.9738764346502014 1.166867853562501 0.4214909557489763 0.1068806533745417 232.25863273688657 1016119.8976232876 0.03478233655894522 0.03589207467065727 554.6245625475597 -2.74399909918099 0.19299141891229965 APNYSCVMTGSWDK ddPTM_BT-474_Trastuzumab_2h_R1 1 APNYSCVMTGSWDK 14 0 P78406;E9PQ57;E9PPG9 P78406 RAE1 mRNA export factor 0 125.61 0.00089009 0.0 74205.0 88604.0 82182.0 70218.0 77252.0 89716.0 83876.0 69877.0 93909.0 85696.0 False True 73805.48852495063 91553.13057775091 93752.51126125052 79107.5916003863 87089.58429152235 83514.14408874758 79818.59744256419 75091.57656821627 70766.38526613002 80226.80791196323 0.9199604277655042 1.1411787775255449 1.168593313149511 0.9860493475845991 1.0855421841922213 1.0409755325226413 0.994911794697765 0.9359910798223195 0.8820790345265315 1.0 16.291796775570834 2.068812565153187 1.9184697176179173 0.9314640464503102 1.0666839713488192 0.34991515316635424 0.07192153192847772 0.34799225421811986 2.437584309013885 0.03985822563679304 0.021760851431548024 117.16895731354738 -2.068812565153187 0.13521992489850898 APPARPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 APPARPVK 8 1 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 0 ; 63.48 0.06662 1346220000.0 1578590.0 1317020.0 1476360.0 1126500.0 978580.0 1184860.0 1331680.0 1256010.0 1613470.0 1319070.0 False True 1570091.046837838 1360856.2145445966 1684218.6552488394 1269114.784497353 1103196.362501917 1102953.4170604297 1267261.5508883824 1349739.8440895474 1215851.9378903264 1234885.8232873564 1.271446329068821 1.1020097476881692 1.363865892285755 1.0277183206451237 0.8933589986199109 0.8931622634749236 1.0262175878858495 1.0930078057714203 0.9845865220588893 1.0 20.23594622668722 3.6000582357069697 6.552673579389828 0.9901255022368991 1.230149787976991 0.6759428756113851 0.08183624019596665 0.1557908203800645 7.687747640546746 0.023071727268498224 0.035874456800884656 3981.6055738655236 -3.6000582357069697 0.24002428574009183 APPHELTEEEKQQILHSEEFLSFFDHSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 APPHELTEEEKQQILHSEEFLSFFDHSTR 29 1 Q13409-2;Q13409-3;Q13409-6;Q13409;Q13409-5;Q13409-7;E7EQL5;E7EV09 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 240.86 6.790299999999998e-46 292600000.0 166360.0 213950.0 195590.0 160300.0 158730.0 199810.0 190290.0 174220.0 334460.0 208650.0 False True 165464.33624433345 221071.19641449366 223127.37190124375 180593.96356407093 178943.32463358028 185997.60500214732 181084.9457216076 187221.18107123437 252036.81453438796 195333.77836574762 0.8470851156860033 1.1317612256521996 1.1422876973354539 0.9245403691824488 0.9160900184837593 0.9522039995247569 0.9270539239892234 0.9584680265625998 1.290287919698498 1.0 17.57558192528464 1.2724951497783807 24.998258355031936 1.1451444034917908 0.9779261076249751 0.2779394561991566 0.10965167497738018 203.92136571971244 150221.03752252972 0.07245226311771764 0.02645417261387974 18.72816167199907 -1.2724951497783807 -0.1672182958668157 APPKPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 APPKPAR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R349;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 68.422 0.080527 0.0 184690.0 240940.0 221720.0 221800.0 207780.0 219900.0 200740.0 214580.0 259750.0 236120.0 False True 183695.64956098804 248959.5422486946 252936.24877521212 249879.85725833394 234239.55139145293 204698.8305889204 191029.43929873095 230593.0492151619 195738.0929716778 221050.6194474976 0.8310116932498267 1.1262558000106657 1.1442458266229278 1.130419167713229 1.0596647590353752 0.9260269484905879 0.8641886631043934 1.0431685276047407 0.8854899093289723 1.0 17.754017251581452 2.7757926380475517 7.134152442187884 0.9478333215755554 1.0712813467841762 0.255695550098306 0.09636178907065644 0.3169654764153995 50.35242338860015 0.02962511801144611 0.031123546699494877 596.7502890609779 -2.7757926380475517 0.12344802520862075 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTR ddPTM_BT-474_Trastuzumab_2h_R1 10 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJM1;X6REW1;F6S6P2;F6U341;F6TC96;F6WML8;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 APPQTHLPSGAS(0.017)S(0.067)GT(0.067)GS(0.067)AS(0.027)AT(0.075)HGGGS(0.679)PPGT(0.001)R;APPQTHLPSGAS(0.032)S(0.122)GT(0.122)GS(0.122)AS(0.08)AT(0.166)HGGGS(0.28)PPGT(0.074)R;APPQTHLPSGASSGTGSASATHGGGS(0.997)PPGT(0.003)R;APPQTHLPSGASSGTGSASAT(0.004)HGGGS(0.938)PPGT(0.058)R;APPQTHLPSGAS(0.011)S(0.07)GT(0.04)GS(0.197)AS(0.014)AT(0.039)HGGGS(0.625)PPGT(0.004)R;APPQTHLPSGASSGTGSAS(0.001)AT(0.002)HGGGS(0.984)PPGT(0.014)R;APPQTHLPSGASSGTGSASAT(0.001)HGGGS(0.863)PPGT(0.136)R;APPQTHLPSGASSGTGSAS(0.008)AT(0.002)HGGGS(0.99)PPGTR;APPQTHLPSGASSGTGSASATHGGGS(0.999)PPGTR;APPQTHLPSGASSGTGSASAT(0.001)HGGGS(0.998)PPGT(0.001)R 203.24 1.4057e-25 39365500000.0 935888.8 1480306.0 1624699.0 1838429.7 1756077.0 1705539.0 1727583.0 1406535.0 1407512.0 1642859.0 True False 930850.0786878204 1529577.090346126 1853442.497063135 2071174.711521556 1979702.9968661522 1587639.1033369568 1644013.2102820543 1511497.7839400123 1060649.5272945222 1538010.332097648 0.6052300555213181 0.9945167847214523 1.2050910571811817 1.3466585160690958 1.2871844587455354 1.0322681650464738 1.0689220845739262 0.9827617880034162 0.6896244486523916 1.0 20.55263376444184 1.5260751999275868 3.542158131233048 0.8406421779131155 1.0947731354612351 0.162447642367876 0.20433283317499637 0.34023482528214044 9.282964810147563 0.14342934652521894 0.05616152199739034 33.57957536651865 -1.5260751999275868 0.25413095754811965 APPQTHLPSGASSGTGSASATHGGGSPPGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJM1;X6REW1;F6S6P2;F6U341;F6TC96;F6WML8;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 ; 235.14 5.8103999999999995e-46 426770000.0 28000.3 49468.0 57359.0 64112.0 66849.0 54898.0 58939.0 52258.0 46933.0 55876.0 False True 27849.5494959258 51114.5124759625 65434.6486266345 72228.57262644857 75361.82390493424 51103.030475991574 56087.8954011552 56157.75732074715 35366.991019979745 52309.945842149646 0.5323949212252012 0.9771471113773568 1.250902626129454 1.3807808718518906 1.4406786834065146 0.9769276120109156 1.0722223947699332 1.0735579327535274 0.6761045237305938 1.0 15.674797655906353 1.3677838815788887 6.96768493519692 0.8400928201233252 1.107828767662986 0.1352861797002589 0.25001921759616424 0.41858668286157086 23.328675667976302 0.17759495725036187 0.0645524613183692 23.322971499611715 -1.3677838815788887 0.2677359475396609 APQQQPPPQQPPPPQPPPQQPPPPPSYS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR 31 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;Q9BUJ2-5 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 APQQQPPPQQPPPPQPPPQQPPPPPS(0.02)Y(0.001)S(0.979)PAR;APQQQPPPQQPPPPQPPPQQPPPPPS(0.118)Y(0.016)S(0.866)PAR;APQQQPPPQQPPPPQPPPQQPPPPPS(0.135)Y(0.004)S(0.861)PAR 116.76 2.8825e-05 2061250000.0 459514.0 463754.0 452754.0 510953.0 505654.0 483902.0 471636.0 474946.0 508529.0 519105.0 True False 457040.02768080455 479189.77154478745 516497.8277916851 575639.5974108086 570046.0396539306 450450.9937227825 448821.16485551576 510388.88224692055 383208.8418894872 485975.27447185013 0.940459426001679 0.9860373494630215 1.0628068029860294 1.1845038783843562 1.1729939147077948 0.9269010531705038 0.9235473252076192 1.0502363166554156 0.7885356766472372 1.0 18.89052338846483 2.7109899004049596 24.899597770500264 0.9488095930571195 1.0707640220697454 0.3280435734054462 0.09344659556256014 963.4759496546922 870131.0875858444 0.032041533177452106 0.030216045496314674 514.0316975453275 -2.7109899004049596 0.12195442901262588 APQS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 APQSPR 6 0 P12270 P12270 TPR Nucleoprotein TPR 1 APQS(1)PR 73.157 0.087801 141110000.0 144440.0 152670.0 139190.0 135640.0 129840.0 100330.0 143250.0 134680.0 167130.0 157670.0 True False 143662.3510887926 157751.52865903618 158786.74213883159 152812.01009251733 146374.35437802612 93394.42325141592 136320.45023185818 144730.50549118262 125943.05092726264 147607.36561192173 0.9732735930434456 1.0687239624192246 1.075737253900336 1.0352600594084123 0.9916466822046174 0.6327219706431289 0.9235341994400316 0.9805100503703674 0.8532301244260582 1.0 17.171405188156672 2.985356291975593 24.775218000397746 0.8815467078536214 1.039397069803435 0.38189779501689447 0.09740305869019578 663.0738543850296 1121835.7355225813 0.03012956557664425 0.03306808355585283 966.8437451604906 -2.985356291975593 0.1578503619498135 APQTS(ph)S(ph)SPPPVRR ddPTM_BT-474_Trastuzumab_2h_R1 1 APQTSSSPPPVRR 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 APQT(0.034)S(0.822)S(0.615)S(0.53)PPPVRR 66.24600000000001 0.022149 0.0 83194.0 100560.0 89803.0 102130.0 110620.0 99343.0 101820.0 86604.0 113620.0 105890.0 True False 82746.09274772234 103907.07881019628 102446.4818183312 115059.64752837527 124706.80130389136 92475.65223826803 96894.57760982755 93066.83024620119 85619.87342999813 99132.0095430099 0.8347060967408485 1.0481687932000878 1.033434934796548 1.160670988702745 1.2579872220766941 0.9328536026312074 0.9774297732538993 0.9388171456952333 0.8636955290697569 1.0 16.597063355754745 APQTS(ph)SSPPPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 APQT(0.077)S(0.37)S(0.37)S(0.183)PPPVR;APQT(0.036)S(0.321)S(0.321)S(0.321)PPPVR;APQT(0.056)S(0.587)S(0.179)S(0.179)PPPVR 113.99 0.0011605 2352380000.0 486273.0 570580.0 522410.0 541010.0 525460.0 548510.0 563790.0 501630.0 610620.0 565330.0 True False 483654.96019800985 589571.4103771059 595960.7871308796 609501.810528995 592374.2163545712 510592.79475365445 536517.3238130491 539064.1778255265 460140.88288880006 529250.1553966367 0.9138494439090785 1.113974940517991 1.126047448553412 1.1516327474145287 1.1192707461949205 0.9647475575533845 1.0137310652482778 1.0185432584739345 0.8694204020477916 1.0 19.013590262268966 2.7354145709890214 24.927272930649096 0.9814600854658934 1.0925545077935392 0.36429340475151917 0.0730154888120282 307.914625752853 2439704.9112918084 0.02341265748490069 0.022916967976347066 543.7691576913309 -2.7354145709890214 0.11109442232764588 APQTSSS(ph)PPPVR ddPTM_BT-474_Trastuzumab_2h_R1 5 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 APQT(0.004)S(0.16)S(0.16)S(0.676)PPPVR;APQT(0.004)S(0.019)S(0.019)S(0.958)PPPVR;APQT(0.006)S(0.209)S(0.209)S(0.577)PPPVR;APQT(0.002)S(0.179)S(0.179)S(0.64)PPPVR;APQT(0.002)S(0.008)S(0.008)S(0.981)PPPVR 166.62 5.392600000000001e-05 38440900000.0 2257670.0 2788720.0 2521210.0 2653310.0 2562530.0 2544910.0 2479790.0 2328980.0 2681170.0 2506260.0 True False 2245514.955570717 2881540.859383164 2876174.453249834 2989218.7739499956 2888853.0061947275 2368986.361773758 2359833.083982263 2502780.31392081 2020431.5793373345 2346308.3410828593 0.9570417136796161 1.228116871482154 1.2258297014459885 1.2740093540179902 1.2312333190025122 1.0096654051361522 1.0057642649359384 1.0666885805664128 0.861110854000064 1.0 21.16196118751596 2.7289865614341786 22.797677152855446 1.000280796546176 1.1931471556806181 0.5097686418330512 0.09482750051548383 172.8082827595359 411488.20661760564 0.030515922814555126 0.029173922417482293 535.7800783774132 -2.7289865614341786 0.19286635913444217 APRPSAPS(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 APRPSAPSPPPR 12 1 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 APRPSAPS(1)PPPR;APRPS(0.002)APS(0.998)PPPR;APRPS(0.061)APS(0.939)PPPR;APRPSAPS(1)PPPR 108.34 0.0010397 1370720000.0 210169.0 280909.0 227365.0 245930.0 249685.0 233303.0 228967.0 209218.0 265280.0 241275.0 True False 209037.47345597125 290258.88625192345 259376.01570799237 277064.71278422896 281480.9047510588 217175.31274618852 217890.9914711193 224830.90954747764 199905.2985698813 225876.6229340802 0.9254497908664799 1.28503287538805 1.1483083655969508 1.2266196881520028 1.246171033968425 0.9614775974828034 0.9646460472127237 0.9953704222552161 0.8850198660364319 1.0 17.785175441395143 2.7265466746142413 24.234414548154117 0.9641631410344033 1.175261453437702 0.5338197306548504 0.09559143472796053 367.9445448467491 742212.6931841517 0.029230084159102665 0.02776708311757774 532.7784801593879 -2.7265466746142413 0.21109831240329868 APRPTRPDK ddPTM_BT-474_Trastuzumab_2h_R1 6 APRPTRPDK 9 2 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ;;;;; 132.39 0.00017231 11751310000.0 5960170.0 6659950.0 5644280.0 6267310.0 6724170.0 7891820.0 8012510.0 7330130.0 9478640.0 8008860.0 False True 5928081.106957141 6881622.409725203 6438945.563038759 7060750.803398227 7580453.192221908 7346277.05874604 7624914.280539373 7877141.522245942 7142756.179268762 7497727.698069979 0.7906503604396187 0.9178277321936658 0.858786264630047 0.9417187563661139 1.0110334087183805 0.9798004614967646 1.0169633504431126 1.0506038415176946 0.9526561202145828 1.0 22.838022000207886 3.8574268830729594 0.8261716016269152 1.0147171674050106 0.8097232972121156 0.7592522131786377 0.03688160290870831 0.42318406096752065 0.47672436570335575 0.014774476718250952 0.06349386866183811 7201.564969627601 -3.8574268830729594 -0.20499387019289506 APS(ph)DSSLGTPSDGRPELR ddPTM_BT-474_Trastuzumab_2h_R1 3 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 APS(0.992)DS(0.007)S(0.001)LGTPSDGRPELR;APS(0.935)DS(0.033)S(0.033)LGTPSDGRPELR;APS(0.993)DS(0.004)S(0.004)LGTPSDGRPELR 161.8 2.2518e-11 2271990000.0 712070.0 744620.0 648020.0 698110.0 653280.0 781020.0 780890.0 717400.0 870720.0 768470.0 True False 708236.2942384144 769404.2265677046 739255.5833091863 786490.6544211687 736471.3357060762 727029.9257233231 743115.3674105116 770936.0308833859 656142.7230502376 719425.5866797328 0.9844469078546972 1.0694702006897356 1.027563652164461 1.0932202982256334 1.023693554054718 1.010570014723393 1.032928743666334 1.071599405355295 0.9120369572598106 1.0 19.456485944890822 1.2441853025349532 24.999999912816158 0.9560184723590189 1.0413058854020896 0.45862231972403766 0.036085524983405524 99.24157817861496 441113.0838754331 0.024092972717718618 0.008253650351534437 17.546289982209423 -1.2441853025349532 0.08528741304307064 APS(ph)LDIKGPEVDVSGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 APSLDIKGPEVDVSGPK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 APS(1)LDIKGPEVDVSGPK 128.55 0.00017175 0.0 524860.0 294650.0 188820.0 269050.0 187610.0 372690.0 249410.0 225310.0 745930.0 307690.0 True False 522034.2120774285 304457.2471303138 215404.21474713873 303111.70241368166 211501.02144840927 346926.817517893 237345.0854612754 242123.77630099803 562105.5464499077 288052.960773338 1.8122855278970897 1.0569488552137603 0.7477937882285306 1.0522776839367156 0.7342435254981962 1.2043855289197372 0.8239633601545814 0.8405529859889879 1.9513965242392186 1.0 18.135974561176223 4.73442592325058 5.277113445289643 1.0068882771899217 1.8438905288292267 0.3129556942442424 0.3370581692186573 0.1648114650192688 16.230684880579723 0.07651582355984782 0.4998190727033781 54253.27047078331 -4.73442592325058 0.837002251639305 APS(ph)PAPRPVPGSPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPAPRPVPGSPAR 15 1 Q5TZA2-2;Q5TZA2 Q5TZA2-2 CROCC Rootletin 1 APS(1)PAPRPVPGSPAR;APS(1)PAPRPVPGSPAR 108.49 0.00065087 389460000.0 246050.0 266100.0 255620.0 263900.0 250350.0 271930.0 271050.0 245280.0 339340.0 303720.0 True False 244725.2941387248 274956.9776391532 291609.0741111297 297309.7129417233 282230.5885592946 253132.119154366 257938.27598844777 263584.03910660325 255714.20392303795 284336.32957222575 0.8606895028394915 0.967013177854608 1.0255779644825742 1.0456268932957513 0.9925941893668699 0.8902559849991543 0.9071590548295642 0.9270149878601739 0.8993370784090489 1.0 18.117238917965725 2.7501987944804713 24.66360215048397 0.9194209649258676 0.9840401822310256 0.19105257373529183 0.05389967985262565 911.1121880831657 1930825.0639841727 0.016958027350367777 0.017843862402096407 562.598790909297 -2.7501987944804713 0.06461921730515807 APS(ph)PAPSSVPLGSEKPSNVSQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 APSPAPSSVPLGSEKPSNVSQDR 23 1 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 APS(0.98)PAPS(0.011)S(0.009)VPLGSEKPSNVSQDR;APS(1)PAPSSVPLGSEKPSNVSQDR;APS(0.997)PAPS(0.002)S(0.002)VPLGSEKPSNVSQDR;APS(0.995)PAPS(0.003)S(0.003)VPLGSEKPSNVSQDR 224.56 7.8113e-33 11390700000.0 1388820.0 1313300.0 1251200.0 1099800.0 1174280.0 1557810.0 1403960.0 1469870.0 1875730.0 1539470.0 True False 1381342.747432407 1357012.3965933858 1427358.0843746425 1239034.5672349648 1323817.5974971382 1450122.2613902956 1336045.091151968 1579559.1632486237 1413481.4749942806 1441219.706593423 0.9584539686162454 0.9415721908222613 0.990382020065806 0.85971247934407 0.9185397559031542 1.0061770976043032 0.9270238847274344 1.0959877637131332 0.9807536411886106 1.0 20.458858853102868 1.7580651957036038 24.999999999999936 1.0337714060400733 0.943152513593613 0.3892259998051636 0.046999772705680884 7.758992108399987 9954.394305379989 0.02131410568758476 0.01182006837531235 57.288202481020775 -1.7580651957036038 -0.09061889244646038 APS(ph)PARPK ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPARPK 8 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 APS(1)PARPK;APS(1)PARPK 71.03 0.030158 622680000.0 1424850.0 1325010.0 1141430.0 1125700.0 1181080.0 1431800.0 1428070.0 1357570.0 1669890.0 1510060.0 True False 1417178.765915716 1369112.1568645425 1302133.4225125853 1268213.5045793774 1331483.5371903798 1332823.0360946632 1358988.7983428242 1458878.7670007779 1258367.9848795948 1413686.6779725892 1.0024701993712886 0.9684693066698681 0.9210905378128159 0.8970965945566953 0.9418519378706325 0.9427994596413012 0.9613083432969681 1.0319675425483956 0.8901321661206133 1.0 20.431030973612923 1.9958355243202144 19.83563581025393 0.982348352292686 0.9439144999744895 0.0731679494508436 0.04245883319085235 23.535786887443486 112102.70382379077 0.016452966501146277 0.011775528923661807 99.0456768810959 -1.9958355243202144 -0.038433852318196515 APS(ph)PDPDLVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPDPDLVQR 11 0 A0A2R8Y8C6;Q8WXX7-2;Q8WXX7;A0A087WVB5;Q75MD7 A0A2R8Y8C6 AUTS2 Autism susceptibility gene 2 protein 1 APS(1)PDPDLVQR;APS(1)PDPDLVQR 146.36 3.7563e-05 980680000.0 806160.0 892460.0 811430.0 843800.0 799450.0 854750.0 858630.0 755460.0 894210.0 870980.0 True False 801819.7241327963 922164.9915965368 925672.2909240045 950624.9934832372 901255.2187886097 795663.144365074 817094.786614872 811836.2613481503 673843.9273001113 815393.3107165068 0.9833533260509789 1.1309450046704541 1.1352463636359647 1.1658484083563292 1.1053012171471628 0.9758028842129016 1.002086693471731 0.9956376274840533 0.826403550831178 1.0 19.63713659580128 2.7279686812966775 4.536942554413285 0.9649183068384735 1.1116615983388156 0.5455045267386394 0.06563101839153018 0.15873267849851166 8.778299579434933 0.021346835409974965 0.021111126775488487 534.5258112237167 -2.7279686812966775 0.14674329150034215 APS(ph)PEPAAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 APSPEPAAPR 10 0 P20749 P20749 BCL3 B-cell lymphoma 3 protein 1 APS(1)PEPAAPR 105.46 0.0026708 893940000.0 480680.0 456820.0 404360.0 420950.0 416250.0 523340.0 588480.0 428030.0 588330.0 478270.0 True False 478092.07228856825 472024.9775464789 461290.37323987397 474242.22683902417 469256.9701929559 487162.73760984786 560012.9741880895 459971.77209230035 443343.95471810264 447746.399132452 1.0677742427742885 1.0542239501223658 1.0302492083323609 1.0591759705000647 1.0480418627646868 1.0880327313715275 1.2507369691261925 1.0273042351284927 0.9901675492580634 1.0 18.77232230424795 2.7393979668680766 24.939568239391903 1.0840605840191069 1.0512247120844467 0.0023751818222969012 0.06906255826609146 289.03557469148853 8608789.720674109 0.02235140431214548 0.022498643240330848 548.7796101960575 -2.7393979668680766 -0.0328358719346602 APS(ph)PGAYK ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPGAYK 8 0 P54259 P54259 ATN1 Atrophin-1 1 APS(1)PGAYK;APS(1)PGAYK 104.42 0.0048074 658790000.0 1160820.0 1247200.0 1029510.0 1008550.0 1102070.0 1290240.0 1263760.0 1171960.0 1448370.0 1254050.0 True False 1154570.2740992256 1288712.29805168 1174456.0593386632 1136232.3265910393 1242412.0820193426 1201048.7456982664 1202627.1007679794 1259417.6062922955 1091438.6206636704 1174015.4553537804 0.983437031287893 1.0976961948625596 1.0003752965796775 0.9678171794157894 1.0582587106103738 1.0230263496287106 1.0243707570319651 1.0727436342929402 0.9296629066393115 1.0 20.16301997028959 1.2348032272300629 24.999999553228008 0.9648314609646825 1.0305006491359214 0.2786170508632374 0.04085225167763374 121.79900293366958 810337.1643199676 0.03300493888060973 0.009485656016415909 17.171302031432194 -1.2348032272300629 0.0656691881712389 APS(ph)PGDYK ddPTM_BT-474_Trastuzumab_2h_R1 5 APSPGDYK 8 0 P55198 P55198 MLLT6 Protein AF-17 1 APS(0.998)PGDY(0.002)K;APS(1)PGDYK;APS(1)PGDYK;APS(1)PGDYK;APS(0.988)PGDY(0.012)K 132.88 0.00098971 8033780000.0 5437540.0 4509680.0 4112390.0 3859910.0 3810290.0 5045250.0 4885750.0 4546630.0 6278380.0 4437340.0 True False 5408264.888807486 4659781.972640875 4691378.76646534 4348574.2102345135 4295507.846141787 4696483.742741024 4649407.607122517 4885922.617919333 4731157.3749817945 4154145.1622021003 1.3018959804333319 1.1217186185594772 1.1293247065970256 1.0468036239564982 1.0340293076963039 1.1305535939074964 1.1192212658880412 1.176155966424948 1.1389003489887248 1.0 21.986120199837497 4.764102198085914 3.2436204092828365 1.1057037412636503 1.336069281504528 0.57407601952596 0.052188750841974545 0.3044971978696747 4.847489961688842 0.013388705828334964 0.18184017055443477 58090.10989628872 -4.764102198085914 0.23036554024087774 APS(ph)PHVVQENLHSEVVEVCTSSTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 APSPHVVQENLHSEVVEVCTSSTLK 25 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 APS(0.709)PHVVQENLHS(0.291)EVVEVCTSSTLK;APS(0.945)PHVVQENLHS(0.055)EVVEVCTSSTLK;APS(0.934)PHVVQENLHS(0.066)EVVEVCTSSTLK;APS(0.985)PHVVQENLHS(0.015)EVVEVCTSSTLK 129.78 0.00016315 1054890000.0 304008.0 288123.0 273655.0 266006.0 256452.0 335126.0 301189.0 288422.0 405583.0 315383.0 True False 302371.25470646383 297712.99988096824 312183.2453480998 299682.33232579066 289109.6420899074 311959.5284217488 286619.33741628693 309945.5142172399 305632.50418376067 295254.9869270295 1.0241021086671538 1.008325051439508 1.0573343691744452 1.0149949893982835 0.9791863131556829 1.056576661646185 0.970751892794018 1.0497553909016313 1.0351476442946446 1.0 18.17160190172778 APS(ph)PLGPTRDPVATFLETCR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPLGPTRDPVATFLETCR 20 1 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 APS(0.95)PLGPT(0.05)RDPVATFLETCR;APS(0.993)PLGPT(0.007)RDPVATFLETCR 188.29 1.5775e-17 455240000.0 66507.0 75586.0 84149.0 75072.0 72991.0 75993.0 80921.0 70659.0 80966.0 76402.0 True False 66148.9337016224 78101.83431729815 95996.4477637801 84576.10750269446 82285.97119844807 70739.78277828035 77006.54208176045 75931.93337913188 61013.01418881562 71525.95894895689 0.9248241432013278 1.091936906054402 1.3421203878201213 1.182453318284772 1.1504350645220969 0.9890085196727306 1.0766236931785098 1.0615996554945768 0.8530191707371078 1.0 16.12617931444856 2.7444665905957337 23.39264803601006 1.011649318633003 1.1495455764032625 0.2814963565531251 0.1115866459567439 290.0282368902114 1148757.1899177725 0.03613284360614283 0.03735270868669185 555.2219033681541 -2.7444665905957337 0.1378962577702596 APS(ph)PLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPLPK 7 0 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 APS(1)PLPK;APS(1)PLPK 68.735 0.064664 443920000.0 932740.0 869280.0 758100.0 782630.0 780280.0 1029550.0 960910.0 874910.0 1186760.0 985310.0 True False 927718.231477156 898213.459309143 864833.8904766755 881710.8777551376 879644.0329181012 958379.6318000142 914427.1122673273 940200.2269029598 894298.8997692703 922426.6722336676 1.0057365635695192 0.9737505281954911 0.937563837331882 0.9558601288274371 0.9536194685134508 1.0389764960712662 0.9913277009358703 1.0192682575258294 0.9695067658914442 1.0 19.815074703973448 2.761252537713539 24.97963847154769 1.00513332861513 0.9637092240954602 0.3992907442231274 0.023548829027465787 762.2900297473632 839139.8053518495 0.007163446308568065 0.007594798364339714 577.1019446076615 -2.761252537713539 -0.041424104519669824 APS(ph)PPLSQVFQTR ddPTM_BT-474_Trastuzumab_2h_R1 7 APSPPLSQVFQTR 13 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 APS(0.988)PPLS(0.012)QVFQTR;APS(0.996)PPLS(0.004)QVFQTR;APS(1)PPLSQVFQTR;APS(1)PPLSQVFQTR;APS(0.986)PPLS(0.014)QVFQTR;APS(1)PPLSQVFQTR;APS(0.994)PPLS(0.006)QVFQTR 168.45 3.1658e-05 4774250000.0 517861.0 570214.0 498182.0 486257.0 512207.0 552686.0 598728.0 547266.0 656643.0 597259.0 True False 515072.89391576604 589193.228288358 568321.6953244304 547817.0863429472 577433.5253612577 514480.1177029016 569765.2392769284 588105.767880439 494822.13121540466 559141.4192808445 0.9211853676986433 1.0537463474735345 1.0164185226259814 0.9797469252904526 1.0327146325592194 0.9201252133397928 1.019000237917892 1.0518014720441347 0.8849677633465861 1.0 19.092853693268733 APS(ph)PPVEHPR ddPTM_BT-474_Trastuzumab_2h_R1 3 APSPPVEHPR 10 0 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 APS(1)PPVEHPR;APS(1)PPVEHPR;APS(1)PPVEHPR 107.17 0.0014944 1977190000.0 397903.0 404283.0 427974.0 372980.0 410813.0 407224.0 409879.0 345925.0 438852.0 422861.0 True False 395760.7344591796 417739.3152607652 488229.01918330666 420199.2297574994 463127.6004705793 379073.5633821857 390051.5868801659 371739.68007155723 330702.80491552094 395873.64895048353 0.999714771388287 1.0552339524700636 1.2332950689637214 1.061447840419554 1.169887416599704 0.9575620008736696 0.9852931305588216 0.9390361825221031 0.8353746347913289 1.0 18.594680513025576 2.655627406183764 6.3428550918503 0.9417833391966324 1.1057783610062102 0.5490944560486133 0.0727390126858442 0.1859940131516976 11.700655248964734 0.023760502769840843 0.022389584541993024 452.5091925789247 -2.655627406183764 0.1639950218095778 APS(ph)PRPGPGPLR ddPTM_BT-474_Trastuzumab_2h_R1 7 APSPRPGPGPLR 12 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR 100.45 0.0019528 5552300000.0 1407000.0 2065830.0 1848570.0 2185030.0 1813470.0 1755590.0 1720700.0 1536830.0 1680630.0 1827620.0 True False 1399424.8683323949 2134589.9027293916 2108832.587941523 2461654.5739638256 2044404.6552211866 1634230.195514337 1637463.1672876677 1651516.0584646154 1266461.2557882227 1710979.7268957952 0.817908503726897 1.247583398666065 1.2325292665901697 1.4387397672034188 1.1948736873290247 0.9551429335047097 0.957032477677858 0.9652458369339865 0.7401965294386885 1.0 20.706391235007622 2.7198141966436276 4.655210211409805 0.9251808550421348 1.2076375836352 0.4065114198127021 0.15814225583445846 0.19808788201509941 11.588187331681853 0.05188390995399381 0.05086529137878801 524.5829809261037 -2.7198141966436276 0.28245672859306525 APS(ph)PSGLMS(ph)PSRLPGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 APSPSGLMSPSRLPGSR 17 1 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 2 APS(0.584)PS(0.416)GLMS(0.975)PS(0.025)RLPGSR;APS(0.803)PS(0.242)GLMS(0.858)PS(0.087)RLPGS(0.01)R;APS(0.974)PS(0.026)GLMS(0.987)PS(0.013)RLPGSR 144.95 2.8035e-07 461880000.0 309327.0 398127.0 316263.0 358241.0 346865.0 386369.0 363928.0 306331.0 436856.0 389893.0 True False 307661.61780146015 411378.41652214626 360790.08139272494 403594.273868723 391036.20172007155 359660.2204447961 346323.4123000322 329190.97473729966 329198.6923704918 365009.69493580883 0.8428861536282372 1.1270342191718823 0.9884397220084087 1.1057083673892545 1.0713036041106792 0.9853442947811194 0.9488060648935289 0.9018691265041376 0.901890270143058 1.0 18.477575258018675 2.3530021709442877 2.7482514705099703 0.925520378500947 1.034451102156636 0.21438126329328988 0.07812954875769816 0.3346608663559829 5.153245820605929 0.029063458931130805 0.022790403541898065 225.4250480635397 -2.3530021709442877 0.10893072365568901 APS(ph)PSGLMSPSR ddPTM_BT-474_Trastuzumab_2h_R1 13 APSPSGLMSPSR 12 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 APS(0.965)PS(0.035)GLMSPSR;APS(0.878)PS(0.122)GLMSPSR;APS(0.923)PS(0.077)GLMSPSR;APS(0.937)PS(0.063)GLMSPSR;APS(0.98)PS(0.02)GLMSPSR;APS(0.83)PS(0.17)GLMSPSR;APS(0.961)PS(0.039)GLMSPSR;APS(0.928)PS(0.072)GLMSPSR;APS(0.947)PS(0.053)GLMSPSR;APS(0.964)PS(0.036)GLMSPSR;APS(0.948)PS(0.052)GLMSPSR;APS(0.955)PS(0.045)GLMSPSR;APS(0.637)PS(0.363)GLMSPSR 171.26 4.0843e-05 8754360000.0 2487634.0 3001884.0 2828556.0 2791840.0 2538052.0 2720132.0 2892282.0 2422840.0 3080888.0 2672441.0 True False 2474240.8549461206 3101799.8942628014 3226792.098550511 3145286.657746192 2861257.8779872013 2532095.677341982 2752371.270069802 2603644.623732234 2321644.4341841205 2501883.527388147 0.988951255268512 1.2397858894338458 1.2897451313087847 1.2571674993318849 1.1436415191454674 1.0120757619701723 1.1001196658195966 1.0406737944553002 0.9279586394686454 1.0 21.254583197208884 2.8880760164963064 3.6199145122683722 1.0274912092778627 1.2040927103135266 0.48735417580970075 0.08631497055001659 0.21744529342884117 5.184055112334407 0.027758672621630905 0.029998893948848502 772.8158426549014 -2.8880760164963064 0.17660150103566385 APS(ph)PSINR ddPTM_BT-474_Trastuzumab_2h_R1 3 APSPSINR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 APS(0.928)PS(0.072)INR;APS(0.95)PS(0.05)INR;APS(0.853)PS(0.147)INR 148.5 0.00086932 656920000.0 895050.0 930220.0 819640.0 858900.0 898280.0 960290.0 973480.0 871770.0 1171690.0 977130.0 True False 890231.1502494037 961181.8103701351 935038.1875614069 967636.6519349981 1012670.6334773065 893907.41257951 926389.0533452651 936825.9041583627 882942.6993416166 914768.7268369189 0.9731761964880883 1.0507375057449801 1.0221580166984672 1.0577937609223762 1.1070236703203793 0.9771949853056926 1.0127030211762125 1.0241122992887097 0.9652086625158798 1.0 19.803047519669892 APS(ph)PSSR ddPTM_BT-474_Trastuzumab_2h_R1 9 APSPSSR 7 0 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 APS(0.965)PS(0.035)S(0.001)R;APS(0.997)PS(0.003)SR;APS(0.845)PS(0.155)SR;APS(0.853)PS(0.135)S(0.012)R;APS(0.986)PS(0.014)SR;APS(0.83)PS(0.168)S(0.002)R;APS(0.804)PS(0.195)S(0.001)R;APS(0.871)PS(0.125)S(0.004)R;APS(0.997)PS(0.003)SR 144.5 0.0024652 16588570000.0 1621445.0 1763191.0 1537875.0 1625302.0 1588110.0 1182158.0 1619666.0 1394544.0 1792762.0 1556261.0 True False 1612715.3202794734 1821877.7465635329 1754394.4325508708 1831065.066554031 1790346.395034557 1100438.1999606062 1541316.5678550275 1498611.9546309456 1350959.826880041 1456939.0905979262 1.1069202073626956 1.2504831247377928 1.2041645693169434 1.2567890300771352 1.2288409354846817 0.7553083083994867 1.0579142105539037 1.0286030241771582 0.927258960651271 1.0 20.474509134077916 2.7790247566202315 24.926058610851282 0.9703128651371988 1.21405731355458 0.6834514834527845 0.08659174825094537 294.82015226949636 181609.76881355903 0.025998254189577377 0.027575006019535508 601.2080079028622 -2.7790247566202315 0.2437444484173812 APS(ph)PTAEQPPGGGDSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPTAEQPPGGGDSAR 17 0 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 APS(0.977)PT(0.023)AEQPPGGGDSAR;APS(0.999)PT(0.001)AEQPPGGGDSAR 301.35 4.1644999999999997e-41 0.0 104186.0 132557.0 107366.0 110577.0 111327.0 123302.0 119487.0 114608.0 137429.0 134015.0 True False 103625.07415215272 136969.07961260132 122482.19955799854 124576.03686228463 125503.8335631739 114778.42296168738 113706.95732533342 123160.63092763185 103561.46440425288 125462.047963986 0.8259475740576019 1.091717231109749 0.9762490055411591 0.9929380149927435 1.0003330536992343 0.914845762717301 0.9063056053251507 0.9816564684404421 0.8254405701553692 1.0 16.93689149204165 2.7367734394972416 24.89137557011998 0.9276858212691884 0.984581049951102 0.10257133214101277 0.074998915164341 323.4565570934662 4504974.547594027 0.022202051288809116 0.02193142637799709 545.4732271980447 -2.7367734394972416 0.056895228681913546 APS(ph)PTGPALISGAS(ph)PVHCAADGTVELK ddPTM_BT-474_Trastuzumab_2h_R1 3 APSPTGPALISGASPVHCAADGTVELK 27 0 E7EWD6;Q76L83 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 2 APS(0.999)PT(0.001)GPALIS(0.035)GAS(0.965)PVHCAADGTVELK;APS(0.99)PT(0.013)GPALIS(0.113)GAS(0.885)PVHCAADGTVELK;APS(0.923)PT(0.08)GPALIS(0.211)GAS(0.787)PVHCAADGTVELK 246.3 9.1477e-46 1662960000.0 935330.0 862230.0 726260.0 718330.0 732630.0 945220.0 1008440.0 915120.0 1248620.0 988290.0 True False 930294.2872049324 890928.8043209591 828511.0952349164 809270.504347966 825926.0878617786 879879.1662085459 959657.9045850965 983410.9012852022 940914.3316508017 925216.4860823631 1.0054882302671349 0.9629409092064626 0.8954780937195299 0.8746823219446227 0.892684145046951 0.9509981495619597 1.0372252537874336 1.0628981606772392 1.0169666729944555 1.0 19.81943144747681 2.3121169548902563 3.9422191253730734 1.0382726950083652 0.9236692399943519 0.6107555984518556 0.03873282934733592 0.14644148047079625 4.456334018357355 0.015566854182374011 0.012494028905907801 205.1714628285328 -2.3121169548902563 -0.11460345501401326 APS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 4 APSPTK 6 0 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BTY0;H3BUG0;H3BNU7;H3BNI3;H3BTR6;H3BP82;H3BTV0;P59025;Q96FF9;B5MBX0 Q15287;Q96FF9 RNPS1;RTP1;CDCA5 RNA-binding protein with serine-rich domain 1;Receptor-transporting protein 1;Sororin 1 APS(0.93)PT(0.07)K;APS(0.703)PT(0.297)K;APS(0.867)PT(0.133)K;APS(0.963)PT(0.037)K 105.25 0.03476 55666100000.0 57624800.0 46225700.0 40109400.0 36460000.0 37585600.0 30538600.0 47362300.0 47790500.0 71279600.0 53074200.0 True False 57314554.4795171 47764294.480474286 45756454.88284543 41075832.261672005 42371903.372695185 28427538.4621319 45071204.60744381 51356869.78524184 53713697.67770538 49686959.11689131 1.1535130243064675 0.961304441435149 0.920894651153854 0.8266924157109081 0.8527771496946099 0.5721327883087904 0.9071033005141513 1.0336086308768055 1.0810421614118293 1.0 25.5663639146682 -0.16743930438544696 8.986712400903022 0.9999999999282956 0.9168245470361478 0.021027895264713603 0.1515767760927227 0.0 0.0 0.15511928577267278 0.03656196628755696 0.680081084329809 0.16743930438544696 -0.08317545289214778 APS(ph)PTKPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 APSPTKPLR 9 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 APS(0.791)PT(0.209)KPLR;APS(0.987)PT(0.013)KPLR;APS(0.814)PT(0.186)KPLR;APS(0.996)PT(0.004)KPLR 117.45 0.00069656 6030930000.0 1909770.0 1866660.0 1668350.0 1579210.0 1614330.0 2374670.0 2078520.0 2044490.0 2878530.0 2224370.0 True False 1899488.010515393 1928790.6496802021 1903239.1784418395 1779137.824079949 1819905.356616443 2210514.652271905 1977974.0468825244 2197060.225509862 2169154.8518258454 2082408.8022210302 0.9121590383643501 0.9262305497474924 0.9139603983674607 0.8543653014635636 0.8739424049088683 1.0615181082188287 0.9498490617081915 1.0550571161467182 1.041656589960768 1.0 20.98982188437985 2.7434582336916313 24.999743113356026 1.0214810571733275 0.896473848169568 0.7597526168217947 0.0352817429259597 201.81942810688503 1030181.917038621 0.011093861200938084 0.011420788689064695 553.934269252879 -2.7434582336916313 -0.1250072090037595 APS(ph)PTKR ddPTM_BT-474_Trastuzumab_2h_R1 6 APSPTKR 7 1 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BTY0;H3BUG0;H3BNU7;H3BNI3;H3BTR6;H3BP82;H3BTV0 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 1 APS(0.988)PT(0.012)KR;APS(0.985)PT(0.015)KR;APS(1)PTKR;APS(0.982)PT(0.018)KR;APS(0.743)PT(0.257)KR;APS(0.849)PT(0.151)KR 121.64 0.0027064 15530860000.0 7642770.0 6864170.0 6061110.0 5718240.0 5993950.0 5500400.0 7585500.0 6879760.0 9088140.0 7067950.0 True False 7601622.1755115725 7092639.748971604 6914461.603887459 6442168.59769565 6757244.00357493 5120170.294548872 7218560.38557598 7393162.625913417 6848489.671836846 6616867.379823559 1.1488249256273098 1.0719029628127037 1.0449750927412174 0.9735979622833898 1.021214967097484 0.7738057906618347 1.09093321223078 1.1173206596911662 1.035004826108433 1.0 22.657716933601822 4.5493459161449525 1.6607222425341284 1.010595644990948 1.1680879886616222 0.21118252552197636 0.0875657896285494 1.237188211464602 4.427986741067872 0.02553580686829612 0.2780175846587872 35427.94127669441 -4.5493459161449525 0.15749234367067433 APS(ph)RQDVYGPQPQVR ddPTM_BT-474_Trastuzumab_2h_R1 6 APSRQDVYGPQPQVR 15 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR 233.65 7.4823e-18 8420860000.0 1113354.0 729488.0 683956.0 846925.0 689620.0 854781.0 616028.0 720948.0 1427880.0 811737.0 True False 1107359.8257692573 753768.5670951925 780251.0597478753 954145.6181628243 777439.0193020203 795692.0014080406 586228.3721845109 774748.8006597657 1075998.106611739 759931.2496969895 1.4571842205604775 0.9918904735076307 1.0267390110078878 1.2555683406140683 1.02303862304914 1.04705787757157 0.7714229049249655 1.0194985414386952 1.4159150673706022 1.0 19.53550937956185 3.2057316607399686 23.731785599878812 1.0265333825211624 1.1580554067107216 0.09973477383674545 0.1901914960269961 268.5664203893492 194143.19782945883 0.05542885429372691 0.06625622029004533 1605.948672501644 -3.2057316607399686 0.13152202418955916 APS(ph)SDEECFFDLLTK ddPTM_BT-474_Trastuzumab_2h_R1 3 APSSDEECFFDLLTK 15 0 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 APS(0.992)S(0.008)DEECFFDLLTK;APS(0.98)S(0.02)DEECFFDLLTK;APS(0.995)S(0.005)DEECFFDLLTK 261.74 6.0671000000000015e-25 247700000.0 236056.0 219112.0 180066.0 196417.0 204133.0 232248.0 176036.0 176964.0 290398.0 216882.0 True False 234785.10072428716 226405.01046399891 205417.72763827065 221283.37206091106 230128.12755891553 216193.24241298565 167520.46615717522 190169.9522849841 218833.30403383725 203040.40507797824 1.1563466918523793 1.115073674016004 1.0117086180919477 1.0898489489120482 1.1334105025575287 1.0647794084628428 0.8250597514954647 0.9366113715737948 1.0777820500791147 1.0 17.63140732699584 2.4537661914496045 24.175918150457697 0.9476409498669124 1.0966993312017241 0.4837695784398429 0.06880367806197112 129.11224836339315 133648.95511486134 0.024267488989730905 0.020304964085914718 284.293016389236 -2.4537661914496045 0.14905838133481175 APSDTGSLS(ph)PPWDQDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 APSDTGSLSPPWDQDRR 17 1 Q96PC5;Q96PC5-11;Q96PC5-10;Q96PC5-9;Q96PC5-13;Q96PC5-6;G3V599;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5-8;Q96PC5-5 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 APSDTGS(0.001)LS(0.999)PPWDQDRR;APSDT(0.002)GS(0.006)LS(0.992)PPWDQDRR;APSDTGSLS(1)PPWDQDRR 187.43 2.8634e-10 745810000.0 314490.0 407510.0 381040.0 394480.0 423490.0 380080.0 340330.0 364360.0 399150.0 391860.0 True False 312796.82078312367 421073.7240050029 434687.1199409473 444421.1275530542 477418.9412781138 353805.96421208215 323866.93771314644 391550.3933825909 300784.8308359769 366851.15931177523 0.8526532160071151 1.147805351889717 1.1849141236365028 1.2114480662588138 1.3013968449050763 0.9644400875707567 0.8828292605664144 1.0673276707565875 0.8199097186997013 1.0 18.484835318764404 2.615403854345127 9.477088491346391 0.9543261008215781 1.1464708488357767 0.37500794608091215 0.1241299513301581 0.3993748786163398 29.11098082627105 0.04053184226784664 0.03819116331236755 412.4809105190241 -2.615403854345127 0.19214474801419856 APSEEELHGDQT(ph)DFGQGSQSPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 APSEEELHGDQTDFGQGSQSPQK 23 0 Q8TE77;Q8TE77-2;A0A087WWG1;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 APSEEELHGDQT(0.77)DFGQGS(0.23)QSPQK 295.01 4.5056e-61 921390000.0 248850.0 209650.0 207930.0 169400.0 188670.0 278700.0 200570.0 215140.0 288970.0 214820.0 True False 247510.21924983434 216628.07351389877 237204.73664004102 190846.02263102648 212696.0061652973 259434.12498923216 190867.66284819384 231194.83925878396 217757.2154996177 201110.00368334525 1.230720574395433 1.0771620980873098 1.1794775610144594 0.9489633490908799 1.0576102743262568 1.2900110399168423 0.9490709529731881 1.1495939288172274 1.082776647165121 1.0 17.61762532090056 4.171591000816939 0.012616538435653909 4.861651614373441e-07 2.246691072209213 0.11481091859873727 0.10308811336476399 8355.02338456117 19.82508143135962 1634.0364801616977 1902.0096192408453 14845.36913072983 -4.171591000816939 2.2466905860440516 APSEEELHGDQTDFGQGS(ph)QSPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 APSEEELHGDQTDFGQGSQSPQK 23 0 Q8TE77;Q8TE77-2;A0A087WWG1;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 APSEEELHGDQTDFGQGS(0.974)QS(0.025)PQK;APSEEELHGDQT(0.002)DFGQGS(0.998)QSPQK 272.57 7.7751e-52 1334560000.0 558106.0 451019.0 426343.0 345200.0 436428.0 538484.0 459966.0 502426.0 583768.0 513425.0 True False 555101.2193074053 466030.8947682569 486368.38856021204 388902.28460584686 492004.51888857933 501259.8685349902 437715.68733924447 539919.5793875332 439906.1984904345 480657.7769347432 1.1548782646301985 0.9695690304653656 1.0118808264413959 0.8091043217608157 1.0236066958620678 1.042862287034303 0.9106597424276591 1.1232931314057064 0.9152170621181037 1.0 18.87465055088475 APSEEELHGDQTDFGQGSQS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 APSEEELHGDQTDFGQGSQSPQK 23 0 Q8TE77;Q8TE77-2;A0A087WWG1;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 APSEEELHGDQTDFGQGSQS(1)PQK;APSEEELHGDQTDFGQGS(0.002)QS(0.998)PQK 320.84 8.350499999999999e-74 2182800000.0 707360.0 538830.0 520330.0 446880.0 484710.0 597830.0 538390.0 552430.0 690190.0 551350.0 True False 703551.6523550837 556764.6308203869 593587.941210563 503454.9621803613 546434.9453987444 556503.4192404471 512346.0188504721 593655.1317826997 520101.92257217364 516162.37096551724 1.3630432823668295 1.0786617974086727 1.1500023531359247 0.9753809857131084 1.0586493245848205 1.0781557326611568 0.992606295364177 1.1501325264610571 1.0076323882333522 1.0 18.97746544500429 APSEEELHGDQTDFGQGSQS(ph)PQKQEEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 APSEEELHGDQTDFGQGSQSPQKQEEQR 28 1 Q8TE77;Q8TE77-2;A0A087WWG1;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 APSEEELHGDQTDFGQGS(0.006)QS(0.994)PQKQEEQR;APSEEELHGDQTDFGQGS(0.212)QS(0.788)PQKQEEQR;APSEEELHGDQTDFGQGS(0.004)QS(0.996)PQKQEEQR;APSEEELHGDQTDFGQGS(0.004)QS(0.996)PQKQEEQR;APSEEELHGDQTDFGQGS(0.038)QS(0.962)PQKQEEQR 328.86 4.7403e-96 20425650000.0 6043670.0 4952670.0 4954330.0 4513100.0 4755420.0 6413230.0 5980090.0 5836840.0 7313570.0 6329970.0 True False 6011131.552234864 5117516.626997764 5651856.600191666 5084457.997261433 5360994.549417385 5969898.505219571 5690810.200537743 6272414.639672962 5511238.670317115 5925985.895240035 1.014368184214414 0.8635721916092203 0.9537411495919085 0.8579936042955236 0.9046586752296405 1.0074101779443667 0.9603145031291429 1.058459259025775 0.9300121140591882 1.0 22.498623761790856 2.7386470381983847 24.99999979160954 0.9975115611884398 0.9143504623844134 0.32022987690464033 0.05211739071179541 8.103729082371103 2344510.6923717093 0.015515980269192056 0.01553541682334332 547.8315477785299 -2.7386470381983847 -0.08316109880402633 APSEEELHGDQTDFGQGSQSPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 APSEEELHGDQTDFGQGSQSPQK 23 0 Q8TE77;Q8TE77-2;A0A087WWG1;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 243.52 2.1436e-37 149860000.0 395150.0 277310.0 266470.0 309250.0 256440.0 277130.0 309370.0 320230.0 391260.0 342370.0 False True 393022.55630529183 286540.09571256506 303986.65980123903 348401.0182918829 289096.1139610367 257972.65539384953 294404.5911918324 344127.1886949913 294839.21561539354 320519.6534822962 1.2262042343902644 0.8939860398557182 0.9484181593813861 1.086988003720423 0.9019606467813832 0.8048575261800555 0.9185227426563836 1.07365393964523 0.9198787419495288 1.0 18.29005329652928 4.74647331107727 24.8025707925836 0.9543806083608664 1.2262043829737417 0.5127549633474217 0.08071939612113609 796.7708956529747 2497436.333690209 0.02048127674487069 0.22581584960951073 55779.33227272415 -4.74647331107727 0.2718237746128753 APSGHLAPS(ph)PPAFDGELDLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSGHLAPSPPAFDGELDLQR 21 0 Q9P2Y4;G3V2Q8;G3V452;G3V2W3;G3V2E3;G3V4M7;G3V3F2 Q9P2Y4 ZNF219 Zinc finger protein 219 1 APSGHLAPS(1)PPAFDGELDLQR;APSGHLAPS(1)PPAFDGELDLQR 117.61 6.574699999999999e-05 984290000.0 251360.0 371980.0 385940.0 373710.0 353360.0 390920.0 375700.0 332000.0 378180.0 368630.0 True False 250006.70568872147 384361.12943334173 440276.9973493836 421021.6476826502 398358.3014711899 363896.6205266971 357525.9556866255 356775.5258618405 284982.6063523734 345103.71779997885 0.7244393287980301 1.113755400502861 1.2757816698009812 1.2199858360455946 1.1543147202548458 1.0544558106951794 1.0359956652041824 1.033821160016093 0.8257882823434215 1.0 18.396670490437714 1.6785856522371634 1.5873698613510538 0.9225117307854408 1.1071936036788066 0.15746954473118702 0.14619528338290602 0.6299905727249924 3.140683556404516 0.1191401194946522 0.04470665821106292 47.70738941013803 -1.6785856522371634 0.1846818728933658 APSGSSLPSS(ph)PGSNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSGSSLPSSPGSNSR 16 0 Q96Q07-3;Q96Q07-2;Q96Q07 Q96Q07-3 BTBD9 BTB/POZ domain-containing protein 9 1 APSGSSLPS(0.2)S(0.799)PGSNSR;APSGSSLPS(0.044)S(0.955)PGSNSR 119.65 0.00018663 234508000.0 338580.0 422470.0 404970.0 406610.0 385220.0 402940.0 401030.0 367060.0 442620.0 404030.0 True False 336757.1228997747 436531.6585614915 461986.25593765854 458086.7843093373 434275.4836221753 375085.7062187343 381630.6468166284 394451.88109291304 333542.2318041345 378244.45949251426 0.8903160758827702 1.154099280521334 1.221395963228383 1.2110865679934784 1.1481344213338567 0.9916489106594767 1.0089523778581115 1.042849065448689 0.8818165697698357 1.0 18.52895942450284 2.7363426803665045 24.137691223282072 0.994241770259254 1.13675993344464 0.3493907647623532 0.094398459611876 142.90328863991266 1555200.9753224445 0.03052609085607379 0.03007287528342416 544.9324625922877 -2.7363426803665045 0.14251816318538613 APSHMSSSHS(ph)FPQLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 APSHMSSSHSFPQLAR 16 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;D6RCL7 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 APSHMSSS(0.012)HS(0.988)FPQLAR;APSHMSS(0.007)S(0.347)HS(0.646)FPQLAR 269.61 3.9985999999999996e-28 813770000.0 147369.0 295330.0 325010.0 431930.0 400590.0 339460.0 318530.0 258970.0 276850.0 349480.0 True False 146575.58167823506 305159.8805192448 370768.58296243736 486612.29371321946 451602.7620170475 315993.9292028877 303121.4869972339 278295.6564230148 208624.0270999384 327175.88719511894 0.44800239692120497 0.93270895705482 1.1332393292826035 1.4873109931326232 1.3803057611874794 0.96582279309122 0.9264786888663966 0.8505995316734535 0.6376509861055886 1.0 18.31970690026566 -0.8822101020594902 4.323611698231257 0.9999998850482859 0.991721206425393 0.0 0.29427122239955217 3.657425017942302e-07 9.50353379735405e-08 0.30301485419533114 0.07142023673604737 0.131156523927634 0.8822101020594902 -0.008278678622892888 APSPEKAEEESER ddPTM_BT-474_Trastuzumab_2h_R1 2 APSPEKAEEESER 13 1 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ; 136.6 6.4213e-05 1489530000.0 1168680.0 1301440.0 1165560.0 1381770.0 1341000.0 1458440.0 1503350.0 1453110.0 2332410.0 1657040.0 False True 1162387.9567325544 1344757.6436629076 1329660.716770865 1556701.9403239314 1511768.4012702776 1357621.4755984768 1430627.2171452981 1561548.446943067 1757618.808192765 1551286.288536681 0.7493058923566119 0.8668661958789111 0.8571343191752993 1.0034910717817012 0.9745257290298875 0.8751585607574169 0.922219984613414 1.0066152575976586 1.1330073766401405 1.0 20.56503352838541 6.6034333136415135 0.30901939997579153 1.0246818858039488 4.0591365210133594e-14 0.6181773804570758 0.06289391441603112 17.176348026347206 0.531950206143484 0.06647689600978597 8.30086285992958 4012668.7859550407 -6.6034333136415135 -1.0246818858039082 APSPT(ph)KPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 APSPTKPLR 9 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 APS(0.119)PT(0.881)KPLR 90.614 0.018286 1085500000.0 821250.0 759890.0 605990.0 499690.0 529410.0 887240.0 813790.0 669880.0 1061100.0 809740.0 True False 816828.4812494525 785182.4792867941 691308.1246404963 562950.7027656294 596827.2254410879 825907.1871383073 774423.8687203055 719869.8471817162 799606.1230115372 758061.6999467083 1.0775224250306743 1.035776480122914 0.9119417650160868 0.7426185794707802 0.7873069243348461 1.0894986347369462 1.0215842177157182 0.9496190708913577 1.054803485082744 1.0 19.53195575104496 2.7221772037492618 24.743379253603194 1.0140522278014619 0.9086575071215014 0.23870876403768182 0.09936746938456317 1300.7911483379035 1964543.6970644034 0.03612544070052675 0.034148108541082606 527.4450291834811 -2.7221772037492618 -0.10539472067996047 APSPT(ph)KR ddPTM_BT-474_Trastuzumab_2h_R1 1 APSPTKR 7 1 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BTY0;H3BUG0;H3BNU7;H3BNI3;H3BTR6;H3BP82;H3BTV0 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 1 APS(0.152)PT(0.848)KR 90.64 0.009956 8181600000.0 2893100.0 2562300.0 2175500.0 2082500.0 2108700.0 2057500.0 2661900.0 2513000.0 3264000.0 2559700.0 True False 2877523.8710536286 2647584.606556943 2481791.490215018 2346144.2864764645 2377230.44575588 1915269.8678340346 2533133.7275545057 2700532.8207554356 2459630.935359212 2396337.754530573 1.2008006240411286 1.1048461768594002 1.035660138276787 0.9790540928718369 0.9920264542264261 0.7992487136727617 1.0570854307850817 1.126941649043314 1.0264124623955766 1.0 21.19239983406389 4.49520295619149 1.821153275150191 1.0053085770618795 1.217890383374041 0.4029092685069562 0.07845485518533248 0.6314077376850183 3.0707738246761194 0.023528334252213297 0.19543047735687688 31275.40600136774 -4.49520295619149 0.21258180631216161 APTAALPQGVVMAAS(ph)PGSLHSPQQLAEEATR ddPTM_BT-474_Trastuzumab_2h_R1 1 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 Q03060-6;G5E998;Q03060-26;Q03060-32;Q03060-21;Q03060-31;Q03060;J3KR46;C9K092;C9IYM9;Q03060-12;Q03060-7;Q03060-22;Q03060-20;Q03060-16;Q03060-15;E9PAR2;Q03060-1;Q03060-23;Q03060-9;Q03060-24;Q03060-30;Q03060-8;Q03060-2;Q03060-13;Q03060-14;Q03060-19;Q03060-17;Q03060-29;Q03060-28;Q03060-10;Q03060-27;Q03060-11;E9PB41 Q03060-6 CREM cAMP-responsive element modulator 1 APTAALPQGVVMAAS(0.724)PGS(0.275)LHSPQQLAEEATR 174.6 1.7372000000000002e-13 179350000.0 28789.0 36807.0 42168.0 41699.0 41025.0 44956.0 40764.0 46218.0 38521.0 45286.0 True False 28634.00322275861 38032.098744698655 48104.88786917347 46978.0891245052 46249.29057577418 41848.29753504098 38792.08958639763 49667.021850248595 29028.015704954727 42395.808708704775 0.675397028501061 0.8970721376259498 1.1346614048500625 1.1080833354845188 1.0908929911809466 0.9870857240293337 0.9149982219452929 1.1715078297362655 0.6846906944127863 1.0 15.371634025138613 4.60514853847509 3.2480407227237045 1.0253529791859384 0.6681766812064756 0.3669841350767591 0.13289570718593136 0.2638954051087131 4.535809502301741 0.031020336007748353 0.191951663360093 40285.47961611439 -4.60514853847509 -0.3571762979794628 APTAALPQGVVMAASPGSLHS(ph)PQQLAEEATR ddPTM_BT-474_Trastuzumab_2h_R1 1 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 Q03060-6;G5E998;Q03060-26;Q03060-32;Q03060-21;Q03060-31;Q03060;J3KR46;C9K092;C9IYM9;Q03060-12;Q03060-7;Q03060-22;Q03060-20;Q03060-16;Q03060-15;E9PAR2;Q03060-1;Q03060-23;Q03060-9;Q03060-24;Q03060-30;Q03060-8;Q03060-2;Q03060-13;Q03060-14;Q03060-19;Q03060-17;Q03060-29;Q03060-28;Q03060-10;Q03060-27;Q03060-11;E9PB41 Q03060-6 CREM cAMP-responsive element modulator 1 APTAALPQGVVMAAS(0.001)PGS(0.005)LHS(0.994)PQQLAEEATR 157.47 5.264199999999999e-10 199370000.0 27139.0 33092.0 44006.0 51069.0 40029.0 42476.0 44806.0 43345.0 43852.0 47574.0 True False 26992.886639426364 34193.44721546357 50201.66229299107 57534.33016377748 45126.455879528716 39539.734097748886 42638.56260445816 46579.62400145023 33045.2621866949 44537.78658984945 0.6060670883356893 0.7677401557996724 1.127170120852671 1.2918093728728328 1.0132173000670273 0.8877795042190161 0.957357019043597 1.0458450580493404 0.7419601358058103 1.0 15.442742241330405 4.419182928069349 4.621468749493322 1.0137858358062386 0.6383272979410706 0.48538299149331177 0.13653523104753443 0.15443053844613552 6.613781215580571 0.03523471073795559 0.10966083557882486 26253.241165952128 -4.419182928069349 -0.37545853786516803 APVAGTCYQAEWDDYVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 APVAGTCYQAEWDDYVPK 18 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 93.478 0.0049827 99172000.0 64626.0 48795.0 49034.0 47565.0 47233.0 48972.0 52112.0 37786.0 58590.0 60498.0 False True 64278.06079662356 50419.11207779964 55937.56098883162 53586.724123050684 53247.84257807542 45586.680907688096 49591.143472827884 40605.78319342017 44151.279565777055 56636.965845056366 1.1349135646226387 0.8902156272942461 0.9876510888994631 0.9461439772329907 0.9401605785830286 0.8048927096907186 0.8755967543970492 0.7169484203039188 0.779548814224321 1.0 15.789456358996837 2.9649826178417276 1.2286928040619067 0.805733253630049 0.9963875678028628 0.3778768645268581 0.09123039567453146 0.40938970956032167 1.299091862678448 0.03659136250209404 0.04274395332645438 922.5345029885127 -2.9649826178417276 0.19065431417281375 APVDEDRLS(ph)PLVAADSLLEHVR ddPTM_BT-474_Trastuzumab_2h_R1 5 APVDEDRLSPLVAADSLLEHVR 22 1 Q01094 Q01094 E2F1 Transcription factor E2F1 1 APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR 304.86 2.2761e-56 355029000.0 152155.0 189397.0 172975.0 181965.0 161841.0 204116.0 200289.0 161655.0 201281.0 202632.0 True False 151335.81438600953 195700.96465209583 197328.37647434755 205001.75034270814 182450.49204323863 190005.9413573809 190600.25589171823 173718.51696745743 151677.9945772174 189699.85227801665 0.7977645347041057 1.031634776211023 1.0402136538575204 1.080663732105946 0.9617851034266824 1.0016135441102805 1.0047464644958288 0.9157546243782119 0.7995683325832226 1.0 17.53335902973941 1.6290521266684812 4.504854428597501 0.8878151530339605 0.9948727235565976 0.1636073901483105 0.08449776243808887 0.23330721124553416 10.669360119835186 0.046212309468132484 0.02130598598845513 42.564949911285716 -1.6290521266684812 0.10705757052263709 APVDFGYVGIDSILEQMR ddPTM_BT-474_Trastuzumab_2h_R1 1 APVDFGYVGIDSILEQMR 18 0 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4;K7EL40;K7EK18;K7EIE4;K7EQD7;K7ER52;K7ELJ9;K7EJZ2;K7ENQ5;K7ER14;K7EN52;K7EKN4;K7EIR4;K7EJL9;K7EQ08 Q9UHD8 SEPT9 Septin-9 0 160.69 2.3244e-09 0.0 21901.0 18020.0 14981.0 20340.0 14117.0 21845.0 15635.0 16002.0 15589.0 22902.0 False True 21783.087449429855 18619.784806679974 17090.194582813696 22915.041914492806 15914.71627198549 20334.906567598755 14878.675318499838 17196.15049650956 11747.2998318979 21440.374752611348 1.015984454598993 0.8684449325873916 0.7971033519706637 1.0687799154117794 0.7422778965207754 0.9484398851340996 0.6939559354804504 0.8020452391773208 0.5479055271861388 1.0 14.388042502183238 2.2400405365191163 24.99999477947362 0.7488436488066085 0.899986251295525 0.20892354271056734 0.1378568298671612 57.42015459683879 970009.5121097168 0.045821274615802175 0.036425749067931695 173.79630405368835 -2.2400405365191163 0.15114260248891653 APVHFVEPLS(ph)PTGVAGHR ddPTM_BT-474_Trastuzumab_2h_R1 4 APVHFVEPLSPTGVAGHR 18 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 APVHFVEPLS(0.807)PT(0.193)GVAGHR;APVHFVEPLS(0.991)PT(0.009)GVAGHR;APVHFVEPLS(0.993)PT(0.007)GVAGHR;APVHFVEPLS(0.998)PT(0.002)GVAGHR 184.84 3.6177e-14 3147000000.0 1093650.0 1154420.0 1018420.0 1069160.0 1078570.0 1190190.0 1075890.0 931050.0 1138100.0 1107180.0 True False 1087761.9099159378 1192844.1718383743 1161804.6837346712 1204515.5463765557 1215919.4963147554 1107914.9667058997 1023845.0904010729 1000529.6787761048 857630.5047586757 1036518.8244955129 1.0494376794800284 1.150817663556614 1.1208717644854511 1.162077830050804 1.1730799938983831 1.0688807000153964 0.9877727892683391 0.9652788305731693 0.827414306899921 1.0 19.98331488717981 2.1761464379266005 1.7269675784046887 0.925046123251622 1.1334766742522293 0.7437311044264803 0.05220433785729735 0.17400784813041859 1.0167047858126368 0.028025220478235673 0.016414892784598033 150.0190593176001 -2.1761464379266005 0.20843055100060726 APVILGSPDDVLEFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 APVILGSPDDVLEFLK 16 0 P09467;A0A3B3IUC7 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ; 191.26 1.6871e-09 91085000.0 164151.0 166017.0 146069.0 147097.0 132078.0 158482.0 180904.0 157070.0 239470.0 185789.0 False True 163267.2292548906 171542.77548560433 166634.24554549184 165719.46511780462 148897.350412361 147526.51236649984 172152.98239960932 168791.36098529908 180455.82723359996 173931.7869580347 0.9386854013883202 0.9862646643594435 0.9580436587229246 0.9527842380978268 0.85606750218858 0.8481860328503048 0.9897729760066539 0.9704457358678441 1.0375091890313262 1.0 17.408162091359568 1.8021051072810417 2.292832638435267 1.0084968807322072 0.9271566963920128 0.38064880607022833 0.04501698781061564 0.3443086098412744 3.499116544153615 0.030823941477975857 0.014109434707885667 63.402313799263204 -1.8021051072810417 -0.08134018434019441 APVIRPGGTLGLSEAADSDAHLFQDSTEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 APVIRPGGTLGLSEAADSDAHLFQDSTEPR 30 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ;;; 234.52 1.2672999999999999e-45 2234810000.0 737922.0 967870.0 874606.0 955130.0 953607.0 932730.0 887590.0 803878.0 937800.0 894750.0 False True 733949.1099428411 1000084.9678602298 997742.9225883684 1076049.360068314 1075043.1989784853 868252.5705102484 844653.8807769276 863867.4583697737 706691.7558761863 837646.288965986 0.876204096658565 1.1939227583694816 1.191126774787017 1.2846106694946615 1.2834094929323314 1.0365384314924186 1.0083658125192578 1.0313033911200822 0.843663686194499 1.0 19.675981643324995 2.545350324981048 5.592862025719337 0.9851737274924744 1.1752954817703434 0.38266876363298874 0.11693255296038252 0.24154823469367445 14.35371541109488 0.039389252845179586 0.03662860410726201 351.0349231775957 -2.545350324981048 0.19012175427786893 APVPEPGLDLSLS(ph)PRPDS(ph)PQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 2 APVPEPGLDLS(0.03)LS(0.97)PRPDS(1)PQPR 89.773 0.0014106 56792000.0 42670.0 47717.0 47698.0 50418.0 51549.0 51745.0 39140.0 45316.0 49848.0 54293.0 True False 42440.2694610827 49305.23149946437 54413.46380155181 56800.913630526025 58113.4595951392 48167.98994462797 37246.64867068009 48697.71002998539 37563.62832897855 50827.974257424146 0.8349785739274018 0.9700412463764998 1.07054165735523 1.117512835409321 1.1433361341692838 0.9476669225626743 0.7327982123001822 0.958088744268072 0.739034535170204 1.0 15.63333511305062 2.476290125437792 24.992726085820113 0.8582406434311408 1.032916512861923 0.3403344892897868 0.1113142699980513 31.98779784078031 961837.7641111456 0.03849884535289589 0.03246821582449259 299.42642524478686 -2.476290125437792 0.17467586943078228 APVPEPGLDLSLSPRPDS(ph)PQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLS(0.001)LS(0.002)PRPDS(0.997)PQPR 194.19 2.7252999999999997e-18 4655800000.0 1548830.0 1798980.0 1581950.0 1812460.0 1647570.0 1705030.0 1595670.0 1431890.0 1634570.0 1669250.0 True False 1540491.2713711907 1858857.9617936246 1804674.809444103 2041917.2501642883 1857378.2735875254 1587165.289308898 1518481.3460486478 1538744.9027900915 1231752.1256158426 1562717.0358831736 0.9857774862616623 1.189503869933232 1.154831468528905 1.306645543164693 1.1885570010042306 1.01564470909598 0.9716930904195807 0.9846599655966928 0.7882118754274121 1.0 20.575625139801588 2.5534852944867708 2.7408888456140446 0.9416658532550016 1.173681117117214 0.5827463940932238 0.09169866859676822 0.20136382921674092 2.9815710972145806 0.03366908837207941 0.030110157111808276 357.6722893389343 -2.5534852944867708 0.23201526386221227 APVPSTCSSTFPEELS(ph)PPSHQAK ddPTM_BT-474_Trastuzumab_2h_R1 4 APVPSTCSSTFPEELSPPSHQAK 23 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;Q14980-5;F5H4J1;F5H6Y5;F5H763;F5H0Z7 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 1 APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(1)PPSHQAK 297.14 6.571299999999998e-62 8773600000.0 1242990.0 1249390.0 1054720.0 1071170.0 1129110.0 1295990.0 1282790.0 1229340.0 1523600.0 1287710.0 True False 1236297.879949172 1290975.1908777966 1203215.4082094172 1206780.012170466 1272895.4657407056 1206401.2617323091 1220736.5469663183 1321079.593262034 1148129.195194026 1205527.2453360034 1.0255246281095807 1.0708801446606686 0.9980823020503848 1.0010391858328456 1.0558827854495527 1.000725007584596 1.0126163068393164 1.095852124763737 0.9523875960796063 1.0 20.201232826043928 4.240484693882186 24.997764604915538 1.0221985905174524 1.0482023761618873 0.08464864686718532 0.03812693963092921 141.81450038011505 1842353.0456121597 0.009398132076278284 0.023092519146109068 17397.413821410748 -4.240484693882186 0.02600378564443484 APVPTGEVYFADSFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 APVPTGEVYFADSFDR 16 0 P27824;P27824-2;H0Y9Q7;D6RDP7;D6RAU8;D6RB85;D6RAQ8;D6RHJ3;D6RD16 P27824 CANX Calnexin 0 119.69 0.00040675 184830000.0 29778.0 33496.0 32898.0 26442.0 29394.0 32156.0 34789.0 27634.0 38407.0 31331.0 False True 29617.678556646817 34610.89411124043 37529.752445457896 29789.55448884067 33137.151668112296 29933.13140708197 33106.12316311421 29696.189402608736 28942.109477432998 29331.428756181384 1.0097591495745024 1.17999346022128 1.279506455598375 1.0156189368225965 1.129748978256945 1.020513922315284 1.1286911196283724 1.0124358294803653 0.9867268900541935 1.0 14.840159727127576 2.206571174358804 0.6371008381323199 0.9899252499814093 1.1416023183060369 0.28048457413186667 0.07902436611571453 0.9677804770613567 0.7739067339597266 0.06906050479236579 0.04737669098241542 160.90560564618335 -2.206571174358804 0.15167706832462757 APVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 APVQPQQSPAAAPGGTDEKPSGK 23 1 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK 206.03 8.7436e-25 4279690000.0 3987420.0 3055720.0 3005830.0 2697200.0 2862480.0 3884680.0 3819150.0 3697580.0 5271990.0 3927510.0 True False 3965952.1737640053 3157427.792978254 3429024.7368572755 3038665.243449853 3226999.860751788 3616141.2151531037 3634403.1239301967 3973512.195530792 3972778.7055466976 3676852.949289519 1.0786268116951343 0.8587310497659054 0.9325977362026047 0.8264309955710947 0.877652684308559 0.9834881255862716 0.9884548482235264 1.0806829237755067 1.0804834352470802 1.0 21.810040048401955 2.2440325512863004 1.893615178951081 1.0580447469215775 0.9097534500859618 0.4175908195375646 0.06851193149290769 0.29526010934037056 2.1308724555725065 0.03326521697858465 0.021505966840628464 175.4011963806701 -2.2440325512863004 -0.1482912968356157 APWNHGEER ddPTM_BT-474_Trastuzumab_2h_R1 1 APWNHGEER 9 0 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 114.4 0.0021823 0.0 83250.0 94353.0 97127.0 96265.0 81478.0 85532.0 94682.0 51142.0 97567.0 88233.0 False True 82801.79124994458 97493.48256740702 110801.63735698184 108452.13912972726 91853.74034205792 79619.37416067092 90101.86993963542 54958.475733814004 73522.92018081868 82601.89439992818 1.0024200032150423 1.180281436347927 1.3413934167238444 1.3129497806023873 1.1120052513243304 0.9638928348929023 1.090796652960465 0.6653415897185742 0.8900875786800673 1.0 16.33388724848281 2.4579905516362763 1.3867053889794014 0.8420543504450825 1.2115491364691673 0.5079826309581181 0.13343902724785037 0.3075156932518914 1.1951176831651265 0.07060347942288575 0.05144835907453706 287.07181269735906 -2.4579905516362763 0.3694947860240848 APYFSGSSTFS(ph)PTILSSDKETIEIIDLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 APYFSGSSTFSPTILSSDKETIEIIDLAK 29 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 APYFSGS(0.001)S(0.088)T(0.088)FS(0.822)PT(0.001)ILSSDKETIEIIDLAK;APYFSGSS(0.003)T(0.018)FS(0.853)PT(0.121)ILS(0.004)S(0.001)DKETIEIIDLAK 220.82 1.1773e-34 257980000.0 173856.0 140525.0 123879.0 107080.0 112922.0 171203.0 166977.0 148063.0 211646.0 151224.0 True False 172919.97861321748 145202.2896758438 141320.08642442955 120636.31702084013 127301.94735886842 159368.13957851275 158899.68459591616 159112.2129086796 159488.6792111018 141572.75485061985 1.2214213023944724 1.025637240929963 0.9982152750615265 0.8521153462622751 0.8991980659922226 1.1256978063799752 1.1223888718106727 1.1238900668180574 1.1265492387951754 1.0 17.11118412528254 2.710311025450343 24.509298461015778 1.1104937077141999 0.9925405183776587 0.20429967039171648 0.09744989571193212 834.6622766802816 724150.6555963954 0.03309127812044056 0.031205295833800335 513.2288076677082 -2.710311025450343 -0.1179531893365412 APYS(ph)PTTSK ddPTM_BT-474_Trastuzumab_2h_R1 3 APYSPTTSK 9 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 APYS(0.988)PT(0.01)T(0.001)SK;APYS(0.57)PT(0.406)T(0.023)S(0.001)K;APYS(0.984)PT(0.015)T(0.001)SK 100.69 0.0047115 2248380000.0 3154690.0 2934790.0 2834240.0 2534740.0 2726380.0 3204370.0 3067760.0 2932640.0 3855110.0 2982450.0 True False 3137705.499559011 3032472.7110319845 3233276.3563442924 2855637.824107256 3073568.332479688 2982859.4441756206 2919360.7288187467 3151488.4884441826 2905069.7963274056 2792107.487596092 1.1237767576994204 1.0860873818446148 1.1580056895044653 1.0227535425456924 1.1008058773288574 1.0683182712080184 1.0455760538546515 1.1287131682589717 1.0404577220730749 1.0 21.412923051286104 1.2236751180402443 0.010921030193933992 1.161776967379633e-07 2.127523382395654 0.3730141952815539 0.03825533791736073 1142.2780117447098 10.543047015412895 1034.5868404099674 1017.420925044933 16.736903727976607 -1.2236751180402443 2.127523266217957 AQAEAQQPTFDALRDELR ddPTM_BT-474_Trastuzumab_2h_R1 8 AQAEAQQPTFDALRDELR 18 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;;;; 209.9 4.3042999999999998e-16 10788210000.0 2989984.0 3366564.0 3214176.0 3577897.0 3384806.0 3463249.0 3592038.0 3136693.0 3678792.0 3444429.0 False True 2973886.2583624525 3478618.047609091 3666704.042681379 4030858.3933499525 3815840.98078303 3223842.748241239 3418277.399022288 3370768.9594643163 2772203.0048872503 3224602.592295968 0.9222489200583934 1.0787741893900358 1.137102615820521 1.2500326095935803 1.1833523268571495 0.9997643604031876 1.0600616048591651 1.0453284902510345 0.859703769856923 1.0 21.620689939642347 1.6966777209682724 1.3271929777380203 0.9413251522162313 1.1088212921068283 0.2948712096550167 0.09341595495948259 0.5382841091048302 1.8078889745888223 0.08157060843504434 0.030822816958557132 49.73678637960692 -1.6966777209682724 0.16749613989059708 AQAGEGVRPSPMQLELR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQAGEGVRPSPMQLELR 17 1 O00764;F2Z2Y4;O00764-3;O00764-2 O00764 PDXK Pyridoxal kinase 0 ; 155.92 7.527599999999999e-08 1721200000.0 437180.0 496340.0 514510.0 461930.0 461990.0 459230.0 470990.0 405200.0 530220.0 520040.0 False True 434826.2714552641 512860.376856134 586948.535798911 520410.2906372501 520821.6880707353 427484.51101114065 448206.41434347496 435438.08156390925 399554.385583996 486850.60197135597 0.8931410779704598 1.053424551144559 1.2056029784542495 1.0689322115039075 1.0697772293221444 0.878060968354912 0.9206241350603185 0.8943977470721673 0.8206919822346321 1.0 18.89311960021056 2.742045389999842 24.47055323830401 0.8976808335206301 1.0666996695070206 0.47228772486695725 0.0818083179815567 190.13367884931478 1335146.6537384887 0.02577269917051393 0.026349420101914954 552.1351423036442 -2.742045389999842 0.16901883598639045 AQASLNAGLDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQASLNAGLDLR 12 0 Q96BX8;K7EPX7;K7EKK6;K7ELS3;K7ESA9 Q96BX8 MOB3A MOB kinase activator 3A 0 69.86399999999999 0.048828 196520000.0 37531.0 80376.0 87851.0 74087.0 73496.0 80038.0 69389.0 51289.0 59513.0 66375.0 False True 37328.937266086075 83051.2665716819 100219.65718541939 83466.40660368884 82855.27995507867 74505.16144918607 66032.38897827854 55116.44562026486 44846.81858334337 62138.89067350348 0.6007338860010166 1.3365424723794694 1.6128330599270555 1.3432233131139495 1.333388463441122 1.1990101632270636 1.0626579950587254 0.8869879237121133 0.7217190087763573 1.0 15.923208865712763 2.0150265716049516 1.8993763409118836 0.8488788811450657 1.2744257341020828 0.30122252727558774 0.24946144524492125 0.4014959950153157 2.7112548956060616 0.1493850049893446 0.07735799669534553 103.52055021149097 -2.0150265716049516 0.4255468529570171 AQAVS(ph)EEEEEEEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQAVSEEEEEEEGK 14 0 G3V529;Q9GZR7;Q9GZR7-2 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK 273.82 5.3371e-33 1964050000.0 920890.0 754620.0 627620.0 595070.0 573810.0 766820.0 703770.0 796070.0 1095140.0 703890.0 True False 915932.0305604974 779737.0705225769 715983.4406291667 670405.8009860984 646881.3022616698 713811.5383001178 669725.9564375204 855476.7857615525 825257.4211241694 658967.1375694518 1.3899509980707692 1.1832715564520797 1.0865237427013659 1.0173584732295409 0.981659426367816 1.083227823671079 1.016326791208059 1.298208570638152 1.252349888293468 1.0 19.32984699483291 4.686680080308855 2.570528839658247 1.1024141997634727 1.4324805139959442 0.4433296225574166 0.10072689025309578 0.46080436275475994 4.238046145009388 0.028189774144889376 0.31242388739221005 48604.902950305586 -4.686680080308855 0.33006631423247157 AQAVSEDAGGNEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQAVSEDAGGNEGR 14 0 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 129.76 0.00015358 72898000.0 61342.0 75547.0 75768.0 77569.0 77870.0 81500.0 77108.0 66359.0 78380.0 77531.0 False True 61011.741487736894 78061.53622587414 86435.47581273805 87389.22744667121 87786.28292834957 75866.09683036385 73377.99145883495 71311.04554417428 59064.299238190855 72582.90520237132 0.8405800417829461 1.0754810104146098 1.1908516967148646 1.2039918656192914 1.2094622374729849 1.0452336761505832 1.0109541806606779 0.9824771458974959 0.8137494506938143 1.0 16.147342182814366 1.9548364649488523 1.6227288660971058 0.91805187237604 1.1101080757343447 0.30889010391771643 0.11037904882458141 0.459089870374768 2.2506649029710863 0.07645409824186536 0.03595074950429519 90.12317118649001 -1.9548364649488523 0.19205620335830464 AQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 AQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSR 33 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;;; 305.93 1.6801e-90 1076780000.0 210727.0 279658.0 240636.0 277150.0 276418.0 295058.0 263868.0 234314.0 308240.0 284483.0 False True 209592.46924597057 288966.2474731688 274515.45715439285 312237.1615831701 311618.1938421534 274661.33495182235 251103.69676635187 251799.70050238323 232278.3822043884 266327.0513818499 0.7869740161898334 1.085005244393517 1.0307456780302902 1.172382452188441 1.1700583632992156 1.0312934173480675 0.9428396231756745 0.9454529654269408 0.87215467223176 1.0 18.02283944790594 2.2867176526843758 4.181627795334798 0.9358296859755265 1.060447273714754 0.1943981874412949 0.10452430379536436 0.32260289940987597 11.821314492287103 0.03916915811758505 0.031201600906683044 193.5163449556303 -2.2867176526843758 0.12461758773922738 AQDGSHPLSLQDLIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQDGSHPLSLQDLIEK 16 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;H0YAB3;H0Y9K1 D6REX3 SEC31A Protein transport protein Sec31A 0 ; 219.97 1.192e-14 1180630000.0 1208690.0 1175890.0 1085380.0 1081380.0 1059820.0 1289590.0 1295270.0 1185310.0 1600070.0 1308860.0 False True 1202182.5473380836 1215028.7878094835 1238192.0697079175 1218282.597123612 1194781.7949547102 1200443.6786683318 1232612.841688091 1273763.8510822244 1205754.1883395277 1225327.4342285763 0.9811112636149668 0.9915951882481302 1.010498936953485 0.9942506493299895 0.9750714474999929 0.9796921583038656 1.0059456821548285 1.0395293661927532 0.9840261098035635 1.0 20.224735889667127 2.039428390583893 7.653772229159712 1.014836722357542 0.9896606376712946 0.2075018329205851 0.016198906773844907 0.2472052850599292 40.189433794811826 0.006252212531005599 0.004578698402866478 109.50359835294023 -2.039428390583893 -0.025176084686247435 AQEALSHTEQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQEALSHTEQSK 12 0 O75146;O75146-2 O75146 HIP1R Huntingtin-interacting protein 1-related protein 0 164.81 5.6291e-05 174950000.0 206720.0 208210.0 181990.0 190630.0 202020.0 227190.0 242100.0 202470.0 260010.0 219030.0 False True 205607.04248875097 215140.1439843973 207612.61011456276 214763.7384542656 227746.04953364798 211484.89004773443 230388.6980881876 217579.33952182782 195934.0194554991 205051.3178789828 1.0027101733142536 1.049201469221323 1.0124909815848713 1.0473658042081684 1.1106783018486093 1.0313754246268663 1.1235660442043998 1.0610970062149945 0.9555365041405657 1.0 17.645625490432412 3.492155178016779 23.310422055307704 1.0572612804586745 1.025188828080428 0.03021379862922502 0.04775395974250644 736.5919671173133 1142099.6221115908 0.012626985046768917 0.01880895528911263 3105.669078345375 -3.492155178016779 -0.03207245237824652 AQEDEVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 AQEDEVKR 8 1 Q8WVM8;Q8WVM8-2;Q8WVM8-3 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 0 ;; 136.33 0.001276 1225480000.0 908350.0 907840.0 807830.0 776690.0 841870.0 1050770.0 994480.0 926810.0 1382130.0 1071190.0 False True 903459.544527172 938056.9055991308 921565.4422157652 875018.8743641793 949077.1543455712 978132.7431465208 946373.2031174736 995973.2684458211 1041522.581093147 1002825.7371081014 0.90091379897421 0.9354136724733974 0.9189686783202529 0.8725532682153879 0.9464028686404403 0.9753765853349666 0.9437065365380203 0.9931668400513523 1.038587804992558 1.0 19.9356394972558 2.1712250927109547 0.8357358590782122 1.0170251465900788 0.9106867666953864 0.7340252359677795 0.024423870894377284 0.33086274025310486 0.4357454379574097 0.020253663181236822 0.011387718716634696 148.328666619466 -2.1712250927109547 -0.10633837989469241 AQEEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 AQEEAER 7 0 P15311;E7EQR4 P15311 EZR Ezrin 0 82.529 0.056396 98910000.0 78167.0 92480.0 86667.0 84990.0 92695.0 58767.0 86476.0 72840.0 93174.0 91226.0 False True 77746.15755717013 95558.14089465937 98868.96027693171 95749.72528577888 104499.1588036902 54704.57561263798 82292.82550959974 78275.69067402539 70212.51616763459 85403.87857749204 0.9103352078632634 1.1188969691575983 1.1576635853513608 1.121140244220869 1.223587974507175 0.6405397099500727 0.9635724615824157 0.9165355482421232 0.8221232728198238 1.0 16.382013970208455 2.758640501786028 24.99982566204163 0.8758338919982 1.1106984836266314 0.5048069885898998 0.11759744530052396 679.2189788040408 845638.8906021825 0.03500955246079743 0.03709236862621347 573.6414194631005 -2.758640501786028 0.23486459162843132 AQEEAERLEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQEEAERLEADR 12 1 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 132.31 0.00016712 632840000.0 662590.0 822180.0 791710.0 997240.0 793670.0 838210.0 904520.0 759190.0 1088490.0 1026330.0 False True 659022.6890606696 849545.7642816944 903175.8863333188 1123490.481750678 894739.1700493532 780266.5156341019 860764.9119980484 815844.6128887066 820246.2245187353 960828.7407146809 0.6858898585511475 0.8841802168092804 0.9399967424595574 1.1692931675992608 0.9312160764298442 0.8120765778235634 0.8958567489954523 0.8491051301003626 0.8536861875183106 1.0 19.873919780628558 -0.1339286741403749 8.344784714945442 0.9999999235835436 0.8963115775848809 0.07250000684016777 0.11541717832767749 0.0 0.0 0.11571773736962905 0.02727493226587623 0.7346345101122028 0.1339286741403749 -0.10368834599866272 AQELDALDNSHPIEVSVGHPSEVDEIFDAISYSK ddPTM_BT-474_Trastuzumab_2h_R1 4 AQELDALDNSHPIEVSVGHPSEVDEIFDAISYSK 34 0 E9PLK3;P55786;P55786-2;A6NEC2;A6NEC2-2;E9PJ74;E9PRQ5 E9PLK3 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein 0 ;;; 272.7 6.1394999999999986e-74 981678000.0 464564.0 630466.0 637135.0 627284.0 678402.0 774202.0 755774.0 620402.0 742346.0 732249.0 False True 462062.839041913 651450.6796852547 726838.0699233034 706698.0900831219 764792.4734963158 720683.2380154777 719214.3242829473 666699.5475775228 559404.7752267683 685516.2419100908 0.6740363113125408 0.9503067029748014 1.0602784084270205 1.0308991193469188 1.1156445708205736 1.0513000188112234 1.0491572340853104 0.9725510597967191 0.8160343125759774 1.0 19.386831322564657 4.718240572501202 3.122393523524371 1.0162106105743878 0.6299697163137311 0.6412314961614011 0.07540881317691221 0.2083613563559235 3.193641211416294 0.019136190302090066 0.1926180596578225 52268.56446043807 -4.718240572501202 -0.38624089426065666 AQELGHSQSALASAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQELGHSQSALASAQR 16 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;H0YFY6 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 216.19 1.5406e-14 485800000.0 182001.0 218485.0 227959.0 222765.0 203329.0 209639.0 232260.0 199850.0 223791.0 232621.0 False True 181021.1268382122 225757.14114802825 260053.64574485208 250967.02615938996 229221.74292459714 195147.1493671246 221024.696480638 214763.82181773725 168640.706695764 217774.9286231424 0.8312303348355938 1.0366534962282046 1.1941395062738036 1.1524146867874134 1.052562590073274 0.8960955726213325 1.014922598657439 0.9861733082662797 0.7743807230794472 1.0 17.732478347531853 2.8237182698687406 6.610709919756854 0.9447950714838976 1.0667712037829495 0.2197112375200947 0.11006233880897123 0.40351744098609205 26.326399190829385 0.03501225804705204 0.0371649917813361 666.374346867374 -2.8237182698687406 0.12197613229905191 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_BT-474_Trastuzumab_2h_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 F8VZ44;Q9NRG9-2;Q9NRG9 F8VZ44 AAAS Aladin 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHS(0.852)PHS(0.148)HL 225.5 1.2005e-49 405260000.0 50965.0 92213.0 93528.0 87927.0 95428.0 101490.0 85225.0 13823.0 77218.0 54572.0 True False 50690.610102743805 95282.25396106429 106695.92944005065 99058.54918464147 107580.19015393005 94474.23518176243 81102.34115888379 14854.542451771746 58188.65856818857 51089.16823856023 0.9921987742302759 1.8650186966471052 2.088425651046722 1.9389344669321844 2.105733834843145 1.849202843558074 1.5874664621701693 0.2907571793380672 1.1389627307392705 1.0 15.640729827562017 1.906893908139103 5.781411588701763 0.7612557256000408 1.8325262925466468 0.6072018928166643 0.3582320592321671 0.1395409498916169 6.88391090171128 0.1575599270670845 0.09529212293061008 80.70378584897593 -1.906893908139103 1.0712705669466058 AQEQQQQMAELHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQEQQQQMAELHSK 14 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 211.7 3.4659e-09 627940000.0 295130.0 294070.0 317230.0 276710.0 314210.0 362210.0 321040.0 281780.0 356420.0 334300.0 False True 293541.05287202535 303857.94218093134 361893.2265874099 311741.45762828446 354222.7810314204 337171.27525062737 305510.0687081029 302807.8544498477 268585.0667833122 312964.68779137067 0.937936656507735 0.9709016832707015 1.1563388481343815 0.9960914754577627 1.1318298672326679 1.07734606619707 0.9761806383465308 0.9675463918527009 0.8581960753423947 1.0 18.25564035963865 1.9212174494919099 2.3782736698362643 0.9342830804329953 1.047603785336307 0.29103333744374804 0.0722957550492888 0.36658524955096844 3.785298980049265 0.04119605278592026 0.02101932926628437 83.409870993739 -1.9212174494919099 0.11332070490331159 AQFEDRN ddPTM_BT-474_Trastuzumab_2h_R1 1 AQFEDRN 7 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 65.252 0.094133 0.0 157180.0 206490.0 191550.0 204230.0 200700.0 185490.0 191400.0 172940.0 218940.0 218770.0 False True 156333.76034433983 213362.894824159 218518.57501755317 230085.4970598262 226257.9553579009 172667.51289649322 182141.2507809958 185845.66097152614 164985.17064569407 204807.91130158 0.7633189526264837 1.041770766901586 1.066944014168399 1.123420944032894 1.1047324974899806 0.8430705230045533 0.8893272219000978 0.9074144635842123 0.8055605352214794 1.0 17.64391191914539 2.730517655413731 24.960460749603214 0.8854802876370317 1.0295942925032116 0.2804195877439516 0.1042551924657535 745.6420263753625 2314014.582747227 0.033724544721579076 0.03230793893340792 537.6722907193139 -2.730517655413731 0.14411400486617987 AQFSVAGVHTVPGS(ph)PQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AQFSVAGVHTVPGSPQAR 18 0 E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;A0A087WWW7;H0Y4U1 E9PGF5 TNS1 Tensin-1 1 AQFSVAGVHT(0.001)VPGS(0.999)PQAR;AQFSVAGVHT(0.003)VPGS(0.997)PQAR;AQFSVAGVHT(0.006)VPGS(0.994)PQAR 117.62 8.1332e-05 1677300000.0 1864523.0 1845212.0 1705557.0 1734127.0 1738309.0 2170770.0 1936371.0 1795709.0 2341824.0 2132045.0 True False 1854484.6153359814 1906628.7659657912 1945684.6006327993 1953667.300395951 1959672.347385336 2020709.779342934 1842701.3370744379 1929713.9240055394 1764712.8540339018 1995976.062764443 0.9291116511525219 0.9552362884177553 0.9748035745168259 0.978802971058734 0.9818115477152436 1.0123917901822101 0.9232081343311711 0.9668021375631479 0.8841352794530813 1.0 20.928662988226748 -0.28703536669783025 17.748583361100415 0.9999999999999937 0.958993717790763 0.1223775366292511 0.03444820308466772 0.0 0.0 0.032471910517341725 0.0076537027082983706 0.5163743167044991 0.28703536669783025 -0.04100628220923064 AQGEPVAGHES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQGEPVAGHESPK 13 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK 227.29 9.8102e-12 1330490000.0 1740580.0 1349870.0 1009470.0 920430.0 987430.0 1412000.0 1266760.0 1312810.0 1773830.0 1254010.0 True False 1731208.9106766183 1394799.6069363542 1151594.6015294674 1036956.3436261872 1113173.3575438564 1314391.7634904746 1205481.979306867 1410778.5485141058 1336693.364604237 1173978.0081880258 1.4746519088110088 1.1880968784834012 0.9809337087215918 0.8832843003819769 0.9482063120262207 1.1196050984968364 1.026835231068311 1.2017078162235504 1.1386017074266612 1.0 20.16297395240992 4.64009524067542 2.8502747655977125 1.047192734037748 1.5070474280490083 0.6812490580968599 0.09098960157892931 0.21992998020435348 2.762272201213103 0.025902522234308435 0.20685725189110749 43661.15705544912 -4.64009524067542 0.4598546940112602 AQGEPVAGHES(ph)PKIPYEK ddPTM_BT-474_Trastuzumab_2h_R1 11 AQGEPVAGHESPKIPYEK 18 1 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(0.981)PKIPY(0.019)EK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK 243.35 2.6458e-24 67742990000.0 17497300.0 13171340.0 12180090.0 11603000.0 11832840.0 16181200.0 16676520.0 15345460.0 24797270.0 15670720.0 True False 17403096.480932802 13609740.08965685 13894940.800759865 13071938.610317592 13339682.03526251 15062631.730447665 15869813.017107071 16490616.147866998 18686315.07489429 14670601.233221613 1.1862565278867676 0.9276879572486477 0.9471282451120502 0.8910295087781511 0.9092798463538608 1.0267221834329665 1.081742511081948 1.1240586452942336 1.273725239874906 1.0 23.80642466122237 2.1893898937174114 2.02365316408517 1.1426763303077716 0.9647633839645335 0.33098126458854316 0.09917529663354106 0.3427835493174117 2.800170299041518 0.04866437831977995 0.03046396027944643 154.66423354209383 -2.1893898937174114 -0.17791294634323807 AQGGQT(ph)QSPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQGGQTQSPTK 11 0 P40123;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;B7Z385 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 1 AQGGQT(0.5)QS(0.5)PTK 193.0 1.2804e-05 395550000.0 719270.0 576350.0 520250.0 477520.0 499900.0 476570.0 700760.0 635930.0 1092200.0 833890.0 True False 715397.5302384091 595533.4613390681 593496.6779059352 537973.9830387711 563559.3018605612 443625.83762511093 666861.5616368369 683386.3257871098 823041.9447301867 780670.4262708523 0.9163886656444227 0.7628487531977403 0.7602397348916897 0.6891179234348528 0.7218914447068285 0.5682626402850256 0.8542165031437611 0.8753839043852931 1.054275808373755 1.0 19.574354092284914 1.5963495994703119 1.9839690427968555 1.0221532713239196 0.7382312865956261 0.6113733866004478 0.08767086848732963 0.19974819215473338 1.6523515906527593 0.06929519746545224 0.024971383423987935 39.47749611496788 -1.5963495994703119 -0.28392198472829355 AQGGQTQS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 5 AQGGQTQSPTK 11 0 P40123;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;B7Z385 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 1 AQGGQT(0.089)QS(0.911)PT(0.001)K;AQGGQT(0.074)QS(0.926)PTK;AQGGQT(0.036)QS(0.964)PTK;AQGGQT(0.029)QS(0.97)PT(0.001)K;AQGGQT(0.09)QS(0.909)PT(0.001)K 199.96 5.0831e-08 1212172000.0 2528980.0 2003580.0 1779170.0 1595080.0 1671840.0 1602460.0 2255850.0 2277950.0 3769870.0 2847810.0 True False 2515364.2526760916 2070267.9491103142 2029661.671177132 1797016.9644527636 1884738.9142279653 1491685.711985089 2146725.91731614 2447942.1961957216 2840836.0521699283 2666060.327667193 0.9434761196409382 0.7765270454032831 0.7612962280388791 0.6740346217240913 0.7069378343276705 0.5595093616243546 0.8052053042605112 0.9181870983158416 1.0655558025784302 1.0 21.346277995453075 1.6399244545234097 2.527245163305776 1.0259921211624727 0.7339173149191911 0.6131866132364019 0.09330649966008298 0.165913427618349 2.4064128016232282 0.06660027741622088 0.026685966040172537 43.6439906963721 -1.6399244545234097 -0.29207480624328164 AQGGSSDSSLALHER ddPTM_BT-474_Trastuzumab_2h_R1 1 AQGGSSDSSLALHER 15 0 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 162.59 1.5866e-06 574630000.0 68595.0 96304.0 83691.0 101290.0 89459.0 96755.0 92842.0 79546.0 81930.0 96165.0 False True 68225.69214162095 99509.42042300275 95473.96534478749 114113.30361450228 100851.07338496496 90066.55458677132 88350.87776911815 85482.12644640342 61739.449305753726 90027.66736900143 0.7578302774632658 1.105320434607485 1.0604958246164817 1.2675359358893494 1.1202231084317782 1.000431947410239 0.9813747301370085 0.9495095112931567 0.6857830610305474 1.0 16.45808081923601 1.8195990917261247 1.6663478654609312 0.8511961041866944 1.0681406917427414 0.23713886028294417 0.14098211691776846 0.480444045206054 2.5497363795528067 0.10022478992781647 0.04250652527133791 66.00838265159987 -1.8195990917261247 0.21694458755604695 AQGPRPHQENNHQESYPLS(ph)VSPMENNHCPASSESHPKPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQGPRPHQENNHQESYPLSVSPMENNHCPASSESHPKPSSPR 42 2 P41212 P41212 ETV6 Transcription factor ETV6 2 AQGPRPHQENNHQES(0.002)YPLS(0.76)VS(0.238)PMENNHCPASSES(0.015)HPKPS(0.52)S(0.465)PR 128.3 3.5298000000000008e-09 1010900000.0 101120.0 115880.0 116210.0 115710.0 104770.0 161100.0 136370.0 59439.0 167530.0 127780.0 True False 100575.5811554882 119736.9957490607 132571.35788457244 130358.87413598635 118111.83847955799 149963.53618860885 129773.26211601042 63874.64000512626 126244.4762869879 119624.97100203825 0.8407574130469342 1.000936466241823 1.1082247859630712 1.089729619527057 0.9873510312286348 1.2536139815327827 1.0848342200542667 0.5339574126545696 1.0553354807905189 1.0 16.8681590494284 AQGPRPHQENNHQESYPLSVS(ph)PMENNHCPASSESHPKPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQGPRPHQENNHQESYPLSVSPMENNHCPASSESHPKPSSPR 42 2 P41212 P41212 ETV6 Transcription factor ETV6 2 AQGPRPHQENNHQESYPLS(0.359)VS(0.481)PMENNHCPAS(0.118)S(0.12)ES(0.186)HPKPS(0.381)S(0.355)PR 87.991 7.9108e-05 331240000.0 29130.0 33231.0 38732.0 33389.0 29887.0 44301.0 39527.0 23322.0 43468.0 35063.0 True False 28973.16731664726 34337.0737464363 44185.128935420886 37616.04397654871 33692.932295872364 41238.576143336795 37614.92800219654 25062.406066716394 32755.893841358527 32825.24932105544 0.8826488119943298 1.046056753768847 1.3460713886209164 1.1459484620706373 1.0264334008960705 1.256306562670484 1.1459144646334432 0.7635099987082309 0.9978871301473277 1.0 15.00251834856203 1.758837800542046 24.999999999682768 0.9002408673500033 1.1295754141403143 0.3153965791222728 0.13425153292713374 9.781915259157062 12071.001034876266 0.06256271754353056 0.034694950939832554 57.390208234384545 -1.758837800542046 0.22933454679031096 AQGS(ph)DEDKLQNS(ph)DDDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQGSDEDKLQNSDDDEK 17 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 2 AQGS(1)DEDKLQNS(1)DDDEK;AQGS(1)DEDKLQNS(1)DDDEK 114.83 0.00019598 710600000.0 1560160.0 779960.0 787140.0 593300.0 679520.0 1093750.0 1061690.0 1002770.0 1741290.0 954820.0 True False 1551760.271910071 805920.4971042236 897962.4700564691 668411.7191675801 766052.8441694108 1018141.6369105586 1010331.9986503418 1077601.7893628855 1312172.4115905785 893882.5701374699 1.7359777712987805 0.9015954936679001 1.0045642459706667 0.7477623364608008 0.8569949451543727 1.139010504203006 1.1302737433340524 1.2055294793332434 1.4679471951095096 1.0 19.769725790623994 2.081239686961301 1.940366727093182 1.2429570628894986 1.0262337851480519 0.05800781923711307 0.2730415709873995 0.8259017443485835 5.94783995624392 0.15088900393511412 0.08366962962106379 120.57011828109275 -2.081239686961301 -0.21672327774144673 AQGVRS(ph)PLLR ddPTM_BT-474_Trastuzumab_2h_R1 7 AQGVRSPLLR 10 1 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR 118.76 0.00047351 2820190000.0 1551328.0 2397835.0 2578650.0 2407840.0 1628175.0 1923676.0 2317649.0 1596777.0 3052378.0 2226884.0 True False 1542975.822416745 2477645.488453133 2941701.505972399 2712672.297118604 1835513.4353006983 1790696.8059662227 2205535.4635910355 1715936.6080093116 2300160.3416696936 2084762.3565886882 0.7401207228921417 1.1884546363871047 1.4110488404951471 1.3011901757269686 0.880442525978914 0.8589452895227602 1.0579313544398266 0.8230849921988764 1.1033201623198257 1.0 20.991451508624362 3.229433541769225 24.999778535916395 0.9397603348157395 1.1801390504165423 0.2314775128500164 0.18156704196772067 252.89519340975045 692699.0271406351 0.05333247709564816 0.06459588545114095 1696.0300461627658 -3.229433541769225 0.24037871560080282 AQHEDQVEQYK ddPTM_BT-474_Trastuzumab_2h_R1 4 AQHEDQVEQYK 11 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;; 187.58 3.5276e-06 5286480000.0 8260400.0 7155600.0 6513700.0 6251500.0 6411500.0 8568600.0 7927600.0 6979000.0 8992800.0 7591100.0 False True 8215926.924216724 7393769.82034846 7430772.341904652 7042939.259019263 7227966.521062187 7976272.850314797 7544111.701627069 7499808.418643935 6776644.937346304 7106629.498932323 1.1560933246134553 1.0404045717395674 1.0456113327732968 0.9910379118648821 1.0170737790886795 1.1223707175832265 1.0615597313410627 1.0553256532890425 0.9535666574941616 1.0 22.760734056299537 4.739525970030211 5.636695153052013 1.03704003626754 1.160153648016343 0.416345806566085 0.043755220198465776 0.14975108200532328 19.58485147435056 0.010594334394236926 0.07096310462188862 54894.13803344859 -4.739525970030211 0.12311361174880298 AQHEDQVEQYKK ddPTM_BT-474_Trastuzumab_2h_R1 9 AQHEDQVEQYKK 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;;; 242.48 1.7490000000000002e-16 22031089600.0 21871427.0 18611699.0 17711326.0 16830772.0 16543056.0 22641129.0 22882014.0 20490948.0 30407058.0 22271785.0 False True 21753673.667175956 19231178.150205355 20204926.75119466 18961546.00950208 18649716.123224966 21076001.043714847 21775123.565037925 22020086.59068565 22913645.989602257 20850380.613465548 1.0433226170042693 0.9223418270736754 0.9690435453320194 0.9094100659849046 0.8944544691515438 1.0108209262186605 1.0443513703042506 1.0560999820053494 1.0989557655750521 1.0 24.313570383811804 2.4894611574596084 3.9649445370420167 1.053058405935328 0.9453037574385411 0.540688100549339 0.04442788785419081 0.15838091802711374 5.649509705327928 0.015286746030944005 0.013435450746858126 308.6463585423274 -2.4894611574596084 -0.10775464849678695 AQHPDYSFGELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQHPDYSFGELSR 13 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9 Q86U86-8 PBRM1 Protein polybromo-1 0 ; 86.37799999999999 0.0088541 746990000.0 533250.0 1270340.0 1139040.0 1148030.0 1171000.0 907030.0 968360.0 785180.0 512810.0 894700.0 False True 530379.041249645 1312622.498963254 1299406.9312868381 1293370.4802898308 1320119.9089392212 844329.1510189564 921516.7273055641 843774.1186632521 386434.8468019481 837599.4800087918 0.6332131930694105 1.5671243002078705 1.5513463920407389 1.5441395454021236 1.5760753682957929 1.0080344737201772 1.100187797747787 1.0073718272298777 0.46135994114739887 1.0 19.67590102106445 2.088628585801421 1.2663608502317039 0.7938368472431768 1.3890628768182562 0.3559127547778693 0.3085875096880085 0.4866453471209447 1.4642120649805987 0.21255644508924681 0.10649469154805871 122.63899581602125 -2.088628585801421 0.5952260295750794 AQHPNIVTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQHPNIVTVR 10 0 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 0 93.096 0.009019 258380000.0 137760.0 146040.0 154340.0 172670.0 157860.0 179770.0 201680.0 158170.0 186670.0 164080.0 False True 137018.31546657495 150900.85311695555 176069.73045267112 194530.0042957459 177962.53529047428 167342.9230330613 191923.96790758226 169973.44857098567 140667.67974984826 153608.2739240447 0.89199827565491 0.9823745118806041 1.1462255642539998 1.26640316518325 1.1585478486560699 1.0894134720621105 1.2494376963215124 1.1065383669048525 0.9157558779640006 1.0 17.22889640161374 4.387252971739845 3.5179079666136097 1.1316529062337237 0.9069250597261526 0.34661773988311484 0.10000033718731063 0.2265417003238712 5.295667110953133 0.02483265755540771 0.08552063634420735 24392.312298968445 -4.387252971739845 -0.22472784650757116 AQHQQALSSLELLNVLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQHQQALSSLELLNVLFR 18 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 ; 202.97 1.2339e-15 401810000.0 170212.0 220469.0 204561.0 199871.0 225522.0 229098.0 190742.0 198560.0 250161.0 192847.0 False True 169295.5975043309 227807.17738867507 233361.4107239141 225174.64810676491 254240.88992638025 213260.9944986834 181515.08075479988 213377.55546725026 188512.17353566072 180539.3393553767 0.9377213747918206 1.2618146172577687 1.292579288021884 1.2472331454782124 1.408229867430323 1.1812439065089124 1.005404591613701 1.1818895329357235 1.0441612017012545 1.0 17.461953707721374 2.4640714779876247 15.95928393038215 1.0836466648260525 1.2416913243849808 0.2985808031934212 0.12144439510919745 4.360977290120559 5328.6130372144735 0.041765134730437 0.0350775506622948 291.1196215390658 -2.4640714779876247 0.1580446595589282 AQHTLPQDPAIVQSSLGSAS(ph)ASPFQPHVPYSPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFR 34 0 Q9BX40;Q9BX40-2;Q5TBQ1;A0A0C4DFV2 Q9BX40 LSM14B Protein LSM14 homolog B 1 AQHTLPQDPAIVQS(0.001)S(0.003)LGS(0.012)AS(0.508)AS(0.407)PFQPHVPY(0.024)S(0.045)PFR 54.804 0.084912 54037000.0 25133.0 28704.0 27304.0 30192.0 32863.0 30799.0 26942.0 17871.0 27989.0 25244.0 True False 24997.686720538808 29659.395288065578 31148.16586937754 34014.30410434452 37047.90825573837 28669.937623047583 25638.71253156524 19204.624767099245 21091.485983385115 23632.906307524263 1.0577491568432287 1.2550041413494115 1.3179998034968963 1.439277237498082 1.5676408044635217 1.2131363468368521 1.0848734471308916 0.8126222190871574 0.8924626412397696 1.0 14.528509438299448 2.126768065034175 2.5002951418731985 0.8888683864355325 1.3303707046141062 0.6569498049393625 0.13288669102547326 0.17316444460754588 2.148798956390644 0.06677592530416404 0.042186758613261245 133.8961424108097 -2.126768065034175 0.44150231817857377 AQIHDLVLVGGSTR ddPTM_BT-474_Trastuzumab_2h_R1 6 AQIHDLVLVGGSTR 14 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ;;;;; 192.78 3.3424e-07 9733150000.0 5972490.0 6824530.0 6285600.0 6014170.0 5651930.0 5284540.0 5431100.0 5256540.0 7502280.0 6448840.0 False True 5940334.7774460185 7051680.355534505 7170557.844585399 6775563.305353262 6371669.783886308 4919232.188269094 5168376.944183211 5648809.706969276 5653443.619401571 6037269.510070307 0.9839439447812295 1.1680247740757865 1.1877153790508674 1.1222893551549196 1.0553893234778096 0.8148107650426569 0.8560785526573291 0.9356563753774664 0.9364239264077071 1.0 22.525464775338666 2.9303392165590707 4.691683439699545 0.903531159795568 1.1214163621417985 0.6727214431970996 0.06878715286068032 0.12333488953482827 5.1886749046465255 0.021418927287570156 0.023220914687192853 851.8031005369047 -2.9303392165590707 0.21788520234623054 AQIWDTAGQER ddPTM_BT-474_Trastuzumab_2h_R1 5 AQIWDTAGQER 11 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 ;;;; 244.16 1.7074999999999998e-15 1555457000.0 1202870.0 1501580.0 1447600.0 1441070.0 1555610.0 1616570.0 1415390.0 1262590.0 1396180.0 1437820.0 False True 1196393.8815714219 1551559.1825757208 1651409.4972352402 1623509.314243765 1753707.7126771505 1504820.3208964563 1346922.1783851287 1356810.8771021129 1052110.1468535017 1346057.0966203674 0.8888136205925331 1.152669664957988 1.226849515805489 1.2061221758869032 1.302847937936881 1.1179468721458443 1.0006426783580975 1.0079890968286158 0.7816237138046392 1.0 20.36030817634818 1.985095551765677 1.7032463789226269 0.9148776213136488 1.1638255777623336 0.4296982847770041 0.11601505273733104 0.34903985670014476 1.8868608443164334 0.07507222556505257 0.03667783855666829 96.62634490924052 -1.985095551765677 0.24894795644868484 AQLADSFHLQQFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQLADSFHLQQFFR 14 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 186.05 1.1074e-06 976980000.0 586140.0 798960.0 786770.0 804010.0 718610.0 846600.0 769220.0 700680.0 847110.0 821340.0 False True 582984.2873662766 825552.9006184805 897540.3772725664 905797.5835629966 810120.7239648286 788076.534682037 732009.8898942403 752968.2995809471 638351.0911924463 768921.3780154492 0.7581845218960258 1.073650602288097 1.1672719772586855 1.1780106646284418 1.0535807003515927 1.0249117233754463 0.9519957577243129 0.9792526532742838 0.8301903282231549 1.0 19.552476565021852 2.2659733539341063 1.927163339093474 0.9354428453000978 1.0612347900953623 0.15414204289975397 0.11582426667317999 0.608734335597486 4.577107230322869 0.057673975055888116 0.03833101666381416 184.4902222037124 -2.2659733539341063 0.12579194479526445 AQLEPVAS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 6 AQLEPVASPAK 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK 215.61 1.3315e-11 2940960000.0 10356750.0 8152960.0 7574380.0 6904700.0 6094070.0 8928100.0 9079820.0 8188390.0 14114300.0 9618080.0 True False 10300990.408743106 8424326.345031597 8640786.866308827 7778834.312045167 6870113.692117209 8310921.461486765 8640594.418319242 8799449.241601914 10636019.8869303 9004245.899947431 1.1440147818267874 0.9355948780875454 0.9596347059290411 0.8639073608696739 0.7629860144265183 0.9230002771842656 0.9596133329021688 0.9772555458145904 1.181222725935594 1.0 23.10217402569316 1.4566913458154729 3.96436474537682 1.0911546091669266 0.9283676763680028 0.27021413576770337 0.09872775398832308 0.2599192361366995 7.8220647224264175 0.07031230155509195 0.026007284187541918 28.621431145677235 -1.4566913458154729 -0.16278693279892387 AQLEQSVEENKER ddPTM_BT-474_Trastuzumab_2h_R1 4 AQLEQSVEENKER 13 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 ;;; 200.97 9.6299e-08 2511710000.0 1777350.0 1615180.0 1503120.0 1520430.0 1544140.0 1935580.0 1929330.0 1786710.0 2527700.0 2075410.0 False True 1767780.945082151 1668940.2899030726 1714746.2306467495 1712916.2821068019 1740777.0761651667 1801777.9104652244 1836000.9371436709 1920043.3729295423 1904782.204444695 1942955.5569521063 0.9098411637656038 0.8589698739795786 0.8825452669317119 0.8816034293619333 0.8959428175989291 0.9273387155039481 0.9449526164272054 0.9882075614439138 0.9803529461233311 1.0 20.88982147050574 2.2332976645992617 1.0091147939900318 0.9959830817750298 0.879882797536111 0.9250999277664668 0.012885722900491066 0.12032202427403979 0.2335687661388936 0.008730507892359844 0.004916802209036639 171.11877580343298 -2.2332976645992617 -0.11610028423891883 AQLGEDIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQLGEDIRR 9 1 Q92734-2;Q92734;Q92734-4;Q92734-3;C9JTY3;C9JUE0;C9JJP5 Q92734-2 TFG Protein TFG 0 75.197 0.062442 267280000.0 131320.0 266010.0 268120.0 270580.0 263090.0 170700.0 176080.0 161470.0 125660.0 178950.0 False True 130612.9877110236 274863.9820435594 305868.9654591822 304835.4002568075 296592.9520433991 158899.9107845781 167562.33770907906 173519.7113280461 94692.77675773244 167529.25779319726 0.7796428482495629 1.6406924119657895 1.8257644634034929 1.819595002522513 1.770394950412313 0.9484905077340492 1.000197457544536 1.0357576557895554 0.565231279628922 1.0 17.354053548437633 2.7280063089170064 23.90626421006641 0.9299288621016728 1.5996844885799395 0.5284788043699716 0.3093801988357071 318.5351388480967 721502.9948133122 0.10157195096178062 0.09678027750243327 534.5721249726689 -2.7280063089170064 0.6697556264782667 AQLGGPEAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQLGGPEAAK 10 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 0 ; 123.63 0.0010634 578630000.0 1540080.0 869980.0 602480.0 581940.0 641910.0 990190.0 946410.0 891970.0 2131100.0 957840.0 False True 1531788.3803989755 898936.7583859852 687303.9471499624 655613.5443323471 723653.4336013463 921740.4959565396 900628.5326627075 958533.3307318846 1605918.9602769664 896709.8311519182 1.7082319465943985 1.0024834424210631 0.766473081115937 0.7311323257046736 0.8070095904622093 1.0279138958167404 1.0043700887117022 1.0689448218723638 1.7909014761374864 1.0 19.774281689366312 1.4199898540295717 10.07454723669946 1.4086215557009323 0.98778429295705 0.19148774575949168 0.3133456243036426 0.555490491440037 91.89425305377117 0.19665652998927827 0.07553801475791541 26.30206544396846 -1.4199898540295717 -0.42083726274388233 AQLGGPEAAKS(ph)DETAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 AQLGGPEAAKSDETAAK 17 1 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 AQLGGPEAAKS(0.999)DET(0.001)AAK;AQLGGPEAAKS(1)DETAAK;AQLGGPEAAKS(1)DETAAK 233.1 2.5540000000000003e-20 2655920000.0 2752470.0 1773150.0 1173970.0 1260590.0 998170.0 1847880.0 1608020.0 1237140.0 3050600.0 1464090.0 True False 2737651.0073481677 1832168.22585819 1339254.7716698358 1420180.5647487962 1125281.0328828895 1720140.4050416283 1530233.9293670664 1329461.6688696293 2298820.5059457165 1370650.5227294876 1.9973370030870168 1.3367143524008183 0.9770942698091043 1.0361361566628051 0.8209831858831718 1.2549810301871647 1.1164289539829506 0.9699494122120673 1.6771747924247595 1.0 20.386429340735535 4.687138456536271 2.773175831108918 1.0931931234421703 2.1126751591151747 0.595048582974793 0.22060299055268298 0.2395720593132969 2.701598556229737 0.05221010588443477 0.5237664692619461 48656.2300900188 -4.687138456536271 1.0194820356730043 AQLGLGHSYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQLGLGHSYSR 11 0 O00567;A0A494C128;Q5JXT2 O00567 NOP56 Nucleolar protein 56 0 69.815 0.05347 248760000.0 732010.0 750160.0 744760.0 572280.0 770590.0 1273100.0 769740.0 675290.0 959120.0 854430.0 False True 728068.9394939573 775128.6221187041 849615.7344300327 644730.5893228092 868720.0688552306 1185093.5935550453 732504.7355076476 725683.5688531387 722757.7275495498 799899.5458856734 0.9102004660945482 0.9690324567698784 1.062153040091193 0.8060144459876443 1.0860364571070695 1.4815530270652588 0.9157459074396597 0.9072183783397946 0.9035606174138906 1.0 19.609459307246485 AQLHDTNMELTDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQLHDTNMELTDLK 14 0 O14974;O14974-5;O14974-3;O14974-4;H0YIS3;H0YIM2;A0A0U1RQZ1 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 ; 90.453 0.0057462 505920000.0 684760.0 647950.0 595840.0 588300.0 572610.0 841810.0 809160.0 746410.0 1360960.0 866620.0 False True 681073.3282439882 669516.6240559531 679729.092865877 662778.7196802426 645528.4893746275 783617.6561075911 770017.8395086225 802110.904393181 1025569.6439296785 811311.5696492898 0.8394719781185909 0.8252275070419233 0.8378151111042423 0.8169225541387826 0.7956604016551541 0.9658652550047202 0.9491025005861589 0.9886595167623629 1.264088523195851 1.0 19.62989653643259 2.0010185999359984 1.1065978316425336 1.1087159888074334 0.8259797948317279 0.6914440566649469 0.07454219441703175 0.2753718615367555 0.6220546335069229 0.05573409234278259 0.025982846196939587 100.23481656610909 -2.0010185999359984 -0.2827361939757055 AQLLHALS(ph)LDEGGPEPEPSLSDSSSGGSFGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AQLLHALSLDEGGPEPEPSLSDSSSGGSFGR 31 0 O15049 O15049 N4BP3 NEDD4-binding protein 3 1 AQLLHALS(1)LDEGGPEPEPSLSDSSSGGSFGR;AQLLHALS(1)LDEGGPEPEPSLSDSSSGGSFGR;AQLLHALS(1)LDEGGPEPEPSLSDSSSGGSFGR;AQLLHALS(1)LDEGGPEPEPSLSDSSSGGSFGR 183.05 1.7848e-18 832962000.0 232048.0 230081.0 209520.0 265375.0 211911.0 228847.0 234944.0 193222.0 248761.0 269504.0 True False 230798.6793509564 237739.1069980985 239018.59481951312 298971.4477904883 238896.60975509803 213027.345537893 223578.86114676233 207641.20680143518 187457.18477662152 252304.02398601748 0.9147641631104033 0.9422723555581255 0.9473435700445244 1.1849650396660225 0.9468600856256558 0.8443279745300409 0.8861486139402712 0.8229801630628869 0.7429813516847051 1.0 17.94480369041562 2.8512809139723334 4.435904424272601 0.8489294424885263 0.9973837571238311 0.3309100724944546 0.09185914955712057 0.25351386138339005 8.165706620949194 0.028773534369996443 0.030662491725673074 710.0368914335999 -2.8512809139723334 0.14845431463530478 AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR 30 1 P62917;E9PKZ0;G3V1A1;E9PKU4 P62917 RPL8 60S ribosomal protein L8 0 114.03 0.00013822 256830000.0 239450.0 198940.0 186740.0 208100.0 189630.0 209820.0 223550.0 218820.0 293330.0 228160.0 False True 238160.82780539623 205561.59763823057 213031.36882682247 234445.4386630261 213778.25647493146 195315.63726315257 212736.0324560687 235149.4595454458 221042.75192062452 213598.63346239645 1.1149922822297638 0.9623731870663826 0.9973442496968322 1.0975980270224888 1.000840937086644 0.9144049008981017 0.9959615799392293 1.10089402602308 1.0348509648098407 1.0 17.704542891577773 1.768260708426905 24.999999999930978 1.0556538217949625 1.0085810022674413 0.0505951754514159 0.06014474161964726 53.72258448391794 45245.92171603319 0.02799798641325872 0.015530394283578225 58.649013084308095 -1.768260708426905 -0.04707281952752118 AQLS(ph)PGIYDDTSAR ddPTM_BT-474_Trastuzumab_2h_R1 5 AQLSPGIYDDTSAR 14 0 O75376;O75376-2;A0A088AWL3;E7EVK1 O75376 NCOR1 Nuclear receptor corepressor 1 1 AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(0.999)PGIYDDTSAR 294.98 1.4313e-43 6870140000.0 2512990.0 3122960.0 2742570.0 2921470.0 2738230.0 3006760.0 2946910.0 2655890.0 2971700.0 2856710.0 True False 2499460.3410594347 3226905.8357308106 3128700.017154217 3291327.8024549354 3086927.35973924 2798909.758351714 2804356.705010578 2854085.9981361516 2239364.3537398824 2674392.322047522 0.9345900077763614 1.206594039748171 1.1698732423666534 1.2306824901198812 1.1542537473992895 1.0465591511304 1.0485958555488055 1.0671904696282764 0.8373357698041173 1.0 21.35077968754354 1.8518323296924872 1.0861263694286942 0.9416138446825426 1.143329524490068 0.3928416169044502 0.09217432762893868 0.49655834647808667 1.0800329513797082 0.07504081132220902 0.03179146733034392 71.09389847867214 -1.8518323296924872 0.20171567980752547 AQLYLPSTS(ph)PPHEGLDGFAQELSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2;I3L465 I3L1Z8 CNTROB Centrobin 1 AQLYLPS(0.024)T(0.151)S(0.825)PPHEGLDGFAQELSR;AQLYLPS(0.023)T(0.159)S(0.818)PPHEGLDGFAQELSR;AQLYLPS(0.018)T(0.147)S(0.835)PPHEGLDGFAQELSR 187.04 1.2778e-17 1048310000.0 339263.0 444221.0 417885.0 402897.0 439020.0 459300.0 428727.0 360670.0 476230.0 429738.0 True False 337436.4457036631 459006.6274477346 476719.5756784657 453903.71889003954 494926.5947245921 427549.6720759031 407987.8371138134 387585.0268451502 358869.49765506067 402311.7529227877 0.838743693795156 1.140922739922609 1.1849506563382912 1.1282387740165112 1.2302066522515418 1.0627322442602345 1.0141086710735867 0.9633947405944567 0.8920184286138304 1.0 18.61795435914594 2.1135586451338013 2.1367061041612843 0.9494683678483612 1.1134964223648864 0.29799613090315624 0.10120840170133143 0.37743743834913074 3.361024723268739 0.05241276285307408 0.030984798906871988 129.88489425883432 -2.1135586451338013 0.16402805451652525 AQNDLIWNIKDELK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQNDLIWNIKDELK 14 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 134.85 3.3114e-05 729040000.0 376900.0 345470.0 357290.0 290750.0 291790.0 439150.0 409960.0 355470.0 667380.0 476560.0 False True 374870.81227752625 356968.76010897505 407593.326379648 327558.9201887308 328947.72692517116 408792.59414790577 390128.6686007157 381996.9764400852 502913.141433833 446145.53279645694 0.8402433392705334 0.8001173022432422 0.9135882720260309 0.7341974672156397 0.7373103679046487 0.9162763360771057 0.8744426200019858 0.856216073812762 1.1272401144118929 1.0 18.76715486887745 1.3107632444497828 5.915920427535603 1.0621576513990327 0.8330809895931854 0.6586867490558933 0.06613540782515732 0.11139554775602774 6.463529740678138 0.047339778891097195 0.01665402747019819 20.453293218734522 -1.3107632444497828 -0.2290766618058473 AQNDLIWNIKDELKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQNDLIWNIKDELKK 15 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 219.58 1.0036e-12 3620800000.0 907380.0 793960.0 637180.0 607720.0 574100.0 910630.0 945260.0 840360.0 1336090.0 856720.0 False True 902494.7668993961 820386.4786410453 726889.4055321567 684657.2896890651 647208.2320427053 847680.2914924453 899534.1625561344 903071.9304616151 1006828.5221887542 802043.3961251067 1.1252443087987478 1.0228704364434131 0.9062968525692753 0.8536412032027614 0.8069491441105894 1.0569007806657633 1.1215529819234626 1.1259639251748785 1.255329234120025 1.0 19.613320773063027 2.5007751137521623 5.76599687296584 1.1302292860670404 0.9390602570153451 0.427339234264663 0.10016582301638582 0.17293771032349797 18.825488787541396 0.03545390087032639 0.03198375454889694 316.79266233675014 -2.5007751137521623 -0.1911690290516953 AQNTWGCGNSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 AQNTWGCGNSLR 12 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;; 327.29 1.0777e-57 1214950000.0 374727.0 454852.0 474060.0 401480.0 410756.0 419079.0 430985.0 366233.0 494700.0 432797.0 False True 372709.51146808383 469991.47385615937 540803.5273966137 452307.32683532836 463063.34185844474 390109.05513585365 410136.6090274159 393563.1661534924 372787.81364038057 405175.5249238466 0.9198717309939568 1.1599700498802217 1.3347388826071334 1.1163244051336523 1.1428709617775612 0.9628149558371654 1.012244283769366 0.971339930336274 0.9200649859352849 1.0 18.628187503616726 2.7419886436802394 22.714685863205624 0.9747838077246083 1.146242329286772 0.4093896391857903 0.09646652587538597 83.44537861750709 552922.9925770446 0.030731086833630752 0.03136452849375705 552.063003255839 -2.7419886436802394 0.1714585215621638 AQPAAGQQGPEVEPPPPT(ph)PGGPQGEAGVAPTGHVTSIEPAPQGHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQPAAGQQGPEVEPPPPTPGGPQGEAGVAPTGHVTSIEPAPQGHPR 46 0 A0A494C1T9 A0A494C1T9 1 AQPAAGQQGPEVEPPPPT(0.25)PGGPQGEAGVAPT(0.25)GHVT(0.25)S(0.25)IEPAPQGHPR 45.665 0.050053 164100000.0 10217.0 12377.0 11363.0 13538.0 12650.0 12025.0 11028.0 10626.0 13161.0 13610.0 True False 10161.992807215416 12788.960962945497 12962.81163103344 15251.909411917586 14260.902517575722 11193.740053805226 10494.533508948913 11418.966077734685 9917.647898364765 12741.39814789278 0.7975571196553531 1.0037329353106028 1.017377487193372 1.197035775421554 1.1192572708305362 0.8785331031866772 0.823656351299605 0.8962098150604607 0.7783798750535853 1.0 13.63723597663788 2.6597803239102498 7.774345422070204 0.8662674131400447 1.0344304686076948 0.3225230101836407 0.10927081538170873 0.3504524595009357 31.14516354953743 0.03660634966195006 0.03449653717123813 456.85704241072835 -2.6597803239102498 0.1681630554676501 AQPAAGQQGPEVEPPPPTPGGPQGEAGVAPT(ph)GHVTSIEPAPQGHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQPAAGQQGPEVEPPPPTPGGPQGEAGVAPTGHVTSIEPAPQGHPR 46 0 A0A494C1T9 A0A494C1T9 1 AQPAAGQQGPEVEPPPPT(0.082)PGGPQGEAGVAPT(0.306)GHVT(0.306)S(0.306)IEPAPQGHPR 50.393 0.036692 183910000.0 26678.0 27593.0 28722.0 33903.0 36065.0 34741.0 29881.0 30259.0 30050.0 30093.0 True False 26534.368612204435 28511.41632467926 32765.807943900614 38195.11632384707 40657.66397599751 32339.436441517424 28435.541873494938 32517.080232088625 22644.5801493702 28172.438976086505 0.9418555714940937 1.01203223295223 1.1630447747783952 1.3557617910280353 1.4431716050750445 1.1479104265331084 1.009339017386168 1.1542160144419857 0.8037848682036902 1.0 14.781996847287429 1.5119159744219404 1.6440075488588917 0.9190453254906699 1.1769588529509052 0.25787167912230347 0.15673150081139667 0.5180887672468519 2.7140258920476126 0.14697665297101575 0.04893431957647522 32.50244068654545 -1.5119159744219404 0.2579135274602353 AQPFGFIDS(ph)DTDAEEER ddPTM_BT-474_Trastuzumab_2h_R1 6 AQPFGFIDSDTDAEEER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AQPFGFIDS(0.921)DT(0.079)DAEEER;AQPFGFIDS(0.997)DT(0.003)DAEEER;AQPFGFIDS(0.996)DT(0.004)DAEEER;AQPFGFIDS(0.65)DT(0.35)DAEEER;AQPFGFIDS(0.998)DT(0.002)DAEEER;AQPFGFIDS(0.951)DT(0.049)DAEEER 406.72 2.675499999999999e-140 1604904000.0 471933.0 563363.0 504941.0 463715.0 486442.0 508026.0 504436.0 461223.0 493394.0 519817.0 True False 469392.16516468587 582114.1968948751 576032.3037741487 522421.2714542305 548387.5053323769 472907.3583845698 480034.50354734797 495641.80230293813 371803.6598408769 486641.83402227634 0.9645536662661828 1.1961860986826474 1.1836884203173137 1.0735231435740404 1.1268811413103341 0.9717770346125282 0.9864226007445428 1.0184940291842024 0.7640191077856602 1.0 18.892500820899464 2.4467767097154516 1.0503669158334903 0.9269461203965879 1.122772403626746 0.4396882492477936 0.08977723205364643 0.4853124065366914 1.0718934579460928 0.055221344647353066 0.03788842447696938 279.7542607602851 -2.4467767097154516 0.19582628323015805 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMK ddPTM_BT-474_Trastuzumab_2h_R1 8 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AQPFGFIDS(0.999)DT(0.001)DAEEERIPATPVVIPMK;AQPFGFIDS(0.998)DT(0.002)DAEEERIPATPVVIPMK;AQPFGFIDS(0.999)DT(0.001)DAEEERIPATPVVIPMK;AQPFGFIDS(0.5)DT(0.5)DAEEERIPATPVVIPMK;AQPFGFIDS(0.997)DT(0.003)DAEEERIPATPVVIPMK;AQPFGFIDS(0.478)DT(0.478)DAEEERIPAT(0.044)PVVIPMK;AQPFGFIDS(0.956)DT(0.044)DAEEERIPATPVVIPMK;AQPFGFIDS(0.939)DT(0.061)DAEEERIPATPVVIPMK 285.29 2.5624e-62 8299139000.0 2483708.0 2944941.0 2859323.0 2710127.0 2629465.0 2967707.0 3309879.0 3040291.0 3645135.0 3352690.0 True False 2470335.9920939007 3042961.580930574 3261890.8247189485 3053228.8003244153 2964311.781689898 2762556.4003208396 3149767.5078043463 3267172.952704885 2746840.3215565556 3138718.4538176763 0.7870524318895787 0.9694917290938817 1.0392428861376386 0.9727628792607128 0.9444337952913093 0.8801542543456535 1.0035202437393616 1.0409257793514315 0.8751470901174737 1.0 21.58174419286093 4.737319598189528 6.7564268600523585 0.974353145700331 0.7839205750250043 0.5000727941591924 0.054558997791146646 0.09184150327700193 28.967679888102648 0.013374080542377632 0.08069709272979038 54615.96332218061 -4.737319598189528 -0.1904325706753267 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQPFGFIDSDTDAEEERIPATPVVIPMKK 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AQPFGFIDS(0.613)DT(0.387)DAEEERIPATPVVIPMKK;AQPFGFIDS(0.99)DT(0.01)DAEEERIPATPVVIPMKK 281.42 1.1148e-71 1310500000.0 376360.0 479310.0 461140.0 468310.0 448410.0 568500.0 550210.0 526060.0 693450.0 583750.0 True False 374333.7195775274 495263.5436009864 526064.5036992661 527597.9979830936 505512.35556570214 529200.9331050537 523594.2402936872 565317.2684785535 522558.53925393545 546494.5752264812 0.6849724343967989 0.9062551872463449 0.9626161494489706 0.9654222052697295 0.9250089177119554 0.9683553270144346 0.9580959519620053 1.0344425985276646 0.9562007802865636 1.0 19.059847649505635 4.898078294005298 1.6690634216182638 0.9748203690046682 0.4861768825889199 0.907522578919195 0.027423842854775695 0.44119535364438994 0.8699966401025341 0.00784858856768452 0.3909114099267375 79082.1183292868 -4.898078294005298 -0.4886434864157483 AQPGS(ph)PESSGQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 AQPGSPESSGQPK 13 0 Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5;Q96PN7 Q05GC8;Q96PN7 BCAR2;TRERF1 Transcriptional-regulating factor 1 1 AQPGS(0.87)PES(0.123)S(0.006)GQPK;AQPGS(1)PESSGQPK;AQPGS(0.955)PES(0.043)S(0.002)GQPK;AQPGS(0.98)PES(0.015)S(0.005)GQPK 144.4 4.3318e-05 1109220000.0 1741366.0 1469364.0 1350146.0 1355243.0 1289935.0 1745125.0 1798267.0 1458924.0 1979557.0 1728853.0 True False 1731990.6789399495 1518270.8924907045 1540234.82112059 1526816.6248438065 1454200.576206248 1624488.616332376 1711277.9551629499 1567796.3171459637 1491721.7020548026 1618516.1213944803 1.0701102423667561 0.9380634968174388 0.9516339076026967 0.9433434765718197 0.8984776592483605 1.003690105312482 1.0573128883563716 0.9686627747613552 0.9216600825511492 1.0 20.62624030505355 AQPGSPES(ph)SGQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQPGSPESSGQPK 13 0 Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5;Q96PN7 Q05GC8;Q96PN7 BCAR2;TRERF1 Transcriptional-regulating factor 1 1 AQPGS(0.469)PES(0.493)S(0.038)GQPK 83.061 0.011176 655720000.0 723330.0 669050.0 540880.0 656560.0 550130.0 753430.0 705020.0 602410.0 844060.0 701840.0 True False 719435.6716495183 691318.9248007337 617031.202586762 739680.4286813874 620185.7946240255 701347.1574834486 670915.4891620566 647364.8931759981 636052.7228245398 657047.9703245452 1.0949515166969577 1.0521589838551066 0.9390961245675608 1.1257632046500752 0.9438972839649564 1.0674215417437818 1.0211057935856063 0.9852627546451986 0.968046096406576 1.0 19.325639178352642 4.47180585236466 24.970780273600447 1.008591593710707 1.0842534090593638 0.21758816061407504 0.05360798952809211 164.05529280159462 770706.5344874172 0.012071387608290131 0.033293933476149166 29635.062832088726 -4.47180585236466 0.07566181534865679 AQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIR 36 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 100.64 3.2514e-05 172247000.0 64619.0 83514.0 72482.0 69904.0 66562.0 76944.0 70239.0 12962.3 78386.0 50308.0 False True 64271.0984838458 86293.71300472095 82686.83557516205 78753.83923258143 75038.27615611664 71625.04238669352 66841.27123096328 13929.6126472257 59068.82061858681 47097.30036915429 1.3646450641561454 1.8322432990498494 1.7556597708797048 1.672151877396356 1.5932606660670066 1.5207887039233212 1.4192166155396035 0.2957624436654272 1.2541869736821072 1.0 15.523356746061497 1.9325075476806983 6.9125464747129675 0.7862653552147442 1.6264498432681602 0.6466120737993656 0.25451299770377567 0.1363733745732625 11.829285318454296 0.10519354553523537 0.0653449974835512 85.60665893236474 -1.9325075476806983 0.8401844880534161 AQPPKPER ddPTM_BT-474_Trastuzumab_2h_R1 2 AQPPKPER 8 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 0 ; 80.438 0.023209 140946000.0 113461.0 142542.0 122950.0 114101.0 110562.0 127930.0 137681.0 124737.0 156994.0 137624.0 False True 112850.13858270216 147286.42430154124 140260.29129944224 128546.1749009609 124641.41534768413 119086.50021482761 131020.84403750396 134045.50834165188 118304.9323118212 128840.7184941656 0.8758887710472714 1.1431667412519972 1.088633259257971 0.9977138935838981 0.9674070185608936 0.9242924256140368 1.0169210911644915 1.040397088034882 0.9182262695715913 1.0 16.97522908563714 3.5494897682932387 7.730743449204213 0.9840531292307305 1.0464080990061575 0.10444018204753003 0.07274254704077973 0.6212168469803907 59.732912544228434 0.019116526362414617 0.029598951149303967 3543.9678081581646 -3.5494897682932387 0.06235496977542698 AQPQDSATFAHT(ph)PPPAQATPAPGFK ddPTM_BT-474_Trastuzumab_2h_R1 3 AQPQDSATFAHTPPPAQATPAPGFK 25 0 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 AQPQDSATFAHT(1)PPPAQATPAPGFK;AQPQDSATFAHT(1)PPPAQATPAPGFK;AQPQDSATFAHT(1)PPPAQATPAPGFK 264.55 1.0346e-44 1336940000.0 1169140.0 1163960.0 1163040.0 1142490.0 1090180.0 1347870.0 1277560.0 1234860.0 1509750.0 1309280.0 True False 1162845.4801436653 1202701.7049713205 1326785.9226750983 1287129.1168578605 1229007.9609968923 1254694.9194446949 1215759.542046859 1327011.5236920232 1137692.3421135324 1225720.6294689972 0.948703523614047 0.9812200888650712 1.0824537751721486 1.0500999052414304 1.0026819582283764 1.023638575772564 0.9918732807601895 1.082637830993272 0.9281824216390971 1.0 20.225198761723146 4.4666657509118215 24.867517980583134 1.025600070586495 0.9568326425569659 0.2122692041765868 0.04354781273396807 211.1415682404227 502183.1318880129 0.01009169764103961 0.027700079640864548 29286.38389281699 -4.4666657509118215 -0.06876742802952907 AQPSMS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQPSMSPK 8 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 AQPS(0.042)MS(0.958)PK;AQPS(0.004)MS(0.996)PK 113.69 0.0029379 811470000.0 1123730.0 933560.0 857260.0 744670.0 579720.0 906390.0 1074730.0 840510.0 1971200.0 1079780.0 True False 1117679.9625381406 964632.9802510628 977954.756562503 838945.1456472642 653543.9057303555 843733.3927125584 1022741.2040327044 903233.1242232985 1485424.1727267397 1010867.5159538322 1.1056641398586466 0.9542625171220943 0.9674410752429082 0.8299259125521055 0.6465178625447133 0.8346626826923311 1.0117460378254102 0.893522751466623 1.4694548487148944 1.0 19.947162499699772 1.2677283408315076 24.759305508527657 1.2347273846183915 0.900685562417687 0.4133827633931768 0.15680877043361258 148.47052944948476 126030.88430351316 0.10363056903444341 0.03782888932535977 18.523725679118606 -1.2677283408315076 -0.33404182220070444 AQPYDPNFYDETYDYGGFTMMFDDRR ddPTM_BT-474_Trastuzumab_2h_R1 12 AQPYDPNFYDETYDYGGFTMMFDDRR 26 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;;;;;; 216.67 6.2516e-34 5980938000.0 1334362.0 1698354.0 1600741.0 1707344.0 1624477.0 1593536.0 1741904.0 1513865.0 1728880.0 1699341.0 False True 1327177.943253554 1754882.686213326 1826111.418909806 1923493.5753420754 1831344.516920464 1483378.6071002532 1657641.4488005221 1626837.2935507093 1302820.6898050967 1590887.6025009726 0.83423740380348 1.1030840164035116 1.1478569674180925 1.209069435400858 1.1511463877407044 0.9324220044007454 1.041960127286559 1.022597253880929 0.8189269234086575 1.0 20.601400481019205 2.7363584725831567 24.96266287803217 0.9759529018570534 1.0997885034872685 0.24000038362865617 0.11003717315622416 303.0000176075271 3434668.6971433074 0.035812414949241145 0.03528455477613313 544.9522782895499 -2.7363584725831567 0.12383560163021512 AQQELVPPQQQAS(ph)PPQLPK ddPTM_BT-474_Trastuzumab_2h_R1 4 AQQELVPPQQQASPPQLPK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 AQQELVPPQQQAS(1)PPQLPK;AQQELVPPQQQAS(1)PPQLPK;AQQELVPPQQQAS(1)PPQLPK;AQQELVPPQQQAS(1)PPQLPK 168.25 1.0572e-11 2636730000.0 2933860.0 2858080.0 2795070.0 2806090.0 2823130.0 3440360.0 3323290.0 2989670.0 3501760.0 3403070.0 True False 2918064.423742488 2953209.4650541577 3188591.560816037 3161340.7062851097 3182638.871497513 3202536.01093633 3162529.7664993494 3212774.3566366527 2638798.1691799895 3185883.1590851936 0.915935794889726 0.9269672858630991 1.000850125882087 0.9922964994086189 0.9989816677430781 1.0052270755139425 0.9926697272248521 1.0084407356480647 0.8282783885701896 1.0 21.603261926928337 4.3034682486700335 6.616763198477882 0.9828468558122478 0.919859885021563 0.1612987970473322 0.051145133487096435 0.33141582826205473 26.15373957110461 0.012013907903596006 0.03327372646953956 20112.601493163816 -4.3034682486700335 -0.06298697079068483 AQQEQELAADAFK ddPTM_BT-474_Trastuzumab_2h_R1 4 AQQEQELAADAFK 13 0 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;; 227.57 2.0662e-11 374113000.0 461631.0 480607.0 423879.0 430175.0 402832.0 546467.0 550330.0 490720.0 643690.0 498524.0 False True 459145.6299880252 496603.7134619337 483557.47877768456 484635.1108931639 454130.26742767246 508691.0225349501 523708.4354352421 527340.01822567 485061.2245040967 466707.7715121302 0.9837968382236195 1.0640570904849962 1.0361033355218436 1.038412343816237 0.9730505792871057 1.0899561858307918 1.1221335220933435 1.1299147998266488 1.039325363990622 1.0 18.832159965370025 2.65202273961373 10.405146194615146 1.0918932265581376 1.0236248012252709 0.25781831287044177 0.04441118444116557 0.6062060622201033 70.29619406702089 0.014049519721849722 0.013242109548993752 448.7688868100394 -2.65202273961373 -0.0682684253328667 AQQMHTGPVLDVCWSDDGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 AQQMHTGPVLDVCWSDDGSK 20 0 P78406;E9PQ57;E9PPG9;B0QZ36 P78406 RAE1 mRNA export factor 0 ;;;; 277.14 1.4320999999999998e-44 4040020000.0 4571880.0 4273110.0 3815760.0 3963070.0 3764280.0 4980370.0 4722650.0 4324770.0 6207710.0 4964230.0 False True 4547265.506063617 4415337.8832004545 4352985.840819518 4464794.255657283 4243638.745364422 4636088.7444299245 4494197.377225025 4647506.298137088 4677903.049552308 4647408.591308877 0.978451844016354 0.9500644921682982 0.9366479738751701 0.9607062017329181 0.9131193571618503 0.9975642669120762 0.9670329795468441 1.000021023937597 1.0065616047404267 1.0 22.14799505874816 2.710355479434331 24.994317961191808 0.9924523196647856 0.9480215678328023 0.6108538208877078 0.018504590054960322 503.31043464428774 446014.20410680777 0.005868951701238176 0.005534406810052454 513.2813439854683 -2.710355479434331 -0.044430751831983306 AQQNNVEHK ddPTM_BT-474_Trastuzumab_2h_R1 5 AQQNNVEHK 9 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 ;;;; 173.32 5.5518e-05 2368037000.0 3019426.0 2644310.0 2438819.0 2179804.0 2281672.0 1961598.0 2783734.0 2669119.0 3530995.0 2808181.0 False True 3003169.745905764 2732324.259830848 2782183.5166052445 2455766.9628996635 2572229.4046705132 1825997.3473650075 2649074.151523429 2868302.213291655 2660828.5951589188 2628960.4843752915 1.1423411510954657 1.039317356069016 1.0582827445070415 0.934120911095861 0.9784207179826596 0.6945701003181535 1.0076508061903855 1.0910404436806274 1.0121219436248772 1.0 21.326061026447782 4.326244562654922 1.4200087769435996 0.9655905671475296 1.139353452133129 0.23816209726608661 0.10013386957639064 1.0616216674218828 3.2521645134081885 0.0312831396426029 0.21377777710621448 21195.54376107631 -4.326244562654922 0.17376288498559944 AQQNTDKDAAAHLQTSHKPSAEDAEGQS(ph)PLSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQK 33 2 Q96F24-3;Q96F24 Q96F24-3 NRBF2 Nuclear receptor-binding factor 2 1 AQQNTDKDAAAHLQT(0.012)S(0.012)HKPS(0.039)AEDAEGQS(0.917)PLS(0.02)QK 50.179 0.046313 94042000.0 82113.0 60206.0 58281.0 55785.0 55246.0 89582.0 82625.0 58621.0 108860.0 77609.0 True False 81670.91273161194 62209.92031470442 66486.45821246676 62847.37528023508 62281.25063130339 83389.40719334556 78628.1130918483 62995.596691406456 82032.91164926598 72655.92717559218 1.1240777718551809 0.8562263635333943 0.9150865015015875 0.8649999762352195 0.8572081184895535 1.1477302738400557 1.0821981928855269 0.8670400219263737 1.1290601446873267 1.0 16.148792875384576 2.761131784187135 24.983210773037207 1.0260546456055863 0.9160616159343614 0.2451980765919961 0.10366033718709652 1297.5571125595668 1436216.799071061 0.032209477706079674 0.034144210783627636 576.9415064473266 -2.761131784187135 -0.10999302967122493 AQQQEEQGS(ph)VNDVKEEEKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQQQEEQGSVNDVKEEEKEEK 21 2 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 AQQQEEQGS(1)VNDVKEEEKEEK 290.66 5.3677e-55 347060000.0 330970.0 139430.0 115480.0 117040.0 110550.0 218430.0 209190.0 186750.0 461820.0 210520.0 True False 329188.09429422405 144070.84326278503 131738.58022984618 131857.2519996184 124627.88721881394 203330.4482289125 199070.6805165963 200686.23329728527 348010.6490709536 197084.4333647602 1.6702896757196894 0.7310107693596551 0.6684372681328254 0.6690394048300073 0.6323578432404906 1.0316920761194381 1.0100781533981429 1.0182754156228002 1.7657947060022847 1.0 17.58845430462666 1.4325203808087015 5.385315709080717 1.3950057166842 0.8940861711730026 0.22607816427916516 0.33617530249449745 0.2514985922930817 13.64490255170493 0.21794841969556125 0.08298907582635773 27.072002459124672 -1.4325203808087015 -0.5009195455111974 AQS(ph)LLSTDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSLLSTDR 9 0 O00231;O00231-2;J3QRY4 O00231 PSMD11 26S proteasome non-ATPase regulatory subunit 11 1 AQS(0.998)LLS(0.002)TDR;AQS(0.991)LLS(0.009)T(0.001)DR 162.49 6.686100000000001e-05 273490000.0 480100.0 304320.0 255880.0 371890.0 267270.0 284030.0 248160.0 287320.0 412750.0 373970.0 True False 477515.1949441247 314449.10723467555 291905.67985116935 418971.23586925917 301305.2502665977 264395.6746347026 236155.5527367391 308761.2773813978 311033.29306664027 350102.91442817537 1.3639280773313538 0.8981619240395833 0.8337710650822207 1.1967087921949084 0.8606190861299196 0.7551941550287898 0.6745318105176388 0.8819157586439945 0.888405323830715 1.0 18.417419545953514 4.737823193852194 5.28358915662597 0.8760957438349045 1.3839852469456848 0.5366303342560506 0.1325196281788892 0.12216628373438473 12.088492672433725 0.03321196073074233 0.22564994993208934 54679.33118936749 -4.737823193852194 0.5078895031107803 AQS(ph)PGAVEEILDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSPGAVEEILDR 13 0 H7BXT7;A0A0C4DH16;B8ZZS0;Q9NYM9;E9PHY4 H7BXT7 BET1L BET1-like protein 1 AQS(1)PGAVEEILDR;AQS(1)PGAVEEILDR 189.44 5.5171e-06 978260000.0 936280.0 874130.0 802290.0 898240.0 1136030.0 1021690.0 816610.0 903840.0 1006190.0 1074420.0 True False 931239.1725104883 903224.8886272567 915245.4583703087 1011957.0919013767 1280696.6867226525 951062.9750995644 777107.4545468591 971289.1304065246 758227.9567552346 1005849.5957427587 0.9258234794266879 0.8979721147675962 0.9099227779621024 1.006071977544623 1.2732486965677368 0.9455319951659993 0.7725881263321606 0.9656405237099953 0.7538184237130696 1.0 19.939983165026 -0.912680573065926 5.454441253090262 1.0000000665459234 0.9432662612874108 0.017222870094066423 0.13484354411670355 1.1215857779458105e-07 2.258235935120953e-08 0.13440760605718086 0.03168013950444521 0.12226986337792277 0.912680573065926 -0.05673380525851268 AQS(ph)PGS(ph)PLHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSPGSPLHAR 11 0 Q13796 Q13796 SHROOM2 Protein Shroom2 2 AQS(1)PGS(1)PLHAR;AQS(1)PGS(1)PLHAR 101.62 0.0033113 490970000.0 593450.0 735880.0 602120.0 722270.0 655080.0 750380.0 722720.0 575360.0 726540.0 712570.0 True False 590254.931138493 760373.320951146 686893.2622791392 813709.3079439888 738500.5550366406 698507.9968045212 687759.2725414907 618296.2848188817 547493.9521372183 667093.1725381311 0.8848163276693616 1.1398307646563164 1.0296811458370552 1.219783594618452 1.107042592306591 1.0470921088082255 1.0309793307053796 0.9268514658400882 0.8207158680010678 1.0 19.3475287503461 1.8371041205559842 2.2149549687232843 0.9001808227073367 1.0808332812463168 0.3685927397271159 0.0905502781172078 0.285768281730151 2.6439981394594105 0.05420254908558123 0.02528439630589128 68.72331819741794 -1.8371041205559842 0.18065245853898015 AQS(ph)PGSPLHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSPGSPLHAR 11 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 AQS(0.996)PGS(0.004)PLHAR;AQS(0.994)PGS(0.006)PLHAR 162.32 2.6501e-05 267030000.0 258810.0 312520.0 295180.0 318050.0 271850.0 332150.0 330330.0 341270.0 378650.0 365450.0 True False 257416.59571649422 322922.0392776707 336738.7782494456 358315.09738959913 306468.486118811 309189.2522969985 314350.67591685633 366737.3003339466 285336.7811500509 342126.66812251374 0.7524014340335338 0.9438669047629868 0.9842517687889248 1.0473170634605087 0.8957749122587143 0.9037274235116903 0.9188137178604534 1.0719342702703898 0.8340091776998609 1.0 18.38417103825784 4.735574637040888 4.219538684365894 0.9625470436516397 0.7363901580658596 0.43861835476904565 0.06883969007416194 0.19226499203949834 7.8368465110670575 0.01645979263742974 0.13091459699605823 54396.960929177425 -4.735574637040888 -0.22615688558578007 AQS(ph)QPESDKDHERPLPALSWAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQSQPESDKDHERPLPALSWAR 22 2 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 AQS(1)QPESDKDHERPLPALSWAR 104.96 0.00027885 193710000.0 35727.0 39045.0 34109.0 32941.0 28987.0 44798.0 32698.0 37294.0 55096.0 39087.0 True False 35534.649801642845 40344.58922179906 38911.2507192572 37111.32722248316 32678.322630590304 41701.21970314898 31116.272821509934 40077.06765509482 41518.329048575746 36592.43419593571 0.9710928114640061 1.1025390933484305 1.0633687420439233 1.0141803363987487 0.8930349496732812 1.139613163744671 0.8503471688955306 1.0952282496567594 1.1346151181488535 1.0 15.159257769142728 -0.9641288130501064 4.42884181491736 0.9999992690284114 1.0282885156372545 0.00858048671011391 0.09399481982498324 6.363367196395102e-07 1.48555538640256e-07 0.08523499195333765 0.020089561169184048 0.10861034342916151 0.9641288130501064 0.028289246608843133 AQS(ph)SPAAPASLSAPEPASQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-3;Q8WUI4-4;Q8WUI4;Q8WUI4-7;Q8WUI4-6;Q8WUI4-5;Q8WUI4-8;H0YI15;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 AQS(0.5)S(0.5)PAAPASLSAPEPASQAR 306.29 2.1217999999999996e-56 0.0 53193.0 38538.0 35143.0 42038.0 40874.0 39722.0 34173.0 36519.0 47772.0 45341.0 True False 52906.61479829787 39820.71403328705 40090.828931568125 47360.006489746775 46079.06162082134 36976.11163553022 32519.92143646273 39244.23321972453 35999.23071200376 42447.29856161692 1.2464071116680866 0.9381212793903222 0.9444848150553534 1.1157366450776254 1.0855593449352854 0.8711063574954089 0.7661246425201004 0.9245401839355504 0.8480923858969946 1.0 15.373385119999757 2.732660274415168 24.339577927793535 0.8716737722273263 1.0549594650685734 0.4600315681139052 0.09904430015637287 305.6842974501047 1260978.5534723161 0.031127283538165698 0.030073579897062202 540.3314848657892 -2.732660274415168 0.18328569284124707 AQS(ph)TDS(ph)LGTSGSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 2 AQS(0.991)T(0.009)DS(0.999)LGT(0.001)SGSLQSK;AQS(0.806)T(0.194)DS(0.996)LGT(0.003)SGSLQSK 166.66 9.6451e-09 959550000.0 3177400.0 2085990.0 2071040.0 1774340.0 1882250.0 2751200.0 2453630.0 2514130.0 3836600.0 3023900.0 True False 3160293.2314423234 2155420.9161424167 2362624.430197617 1998971.2620728198 2121943.380530191 2561016.0196281862 2334938.5431231665 2701747.1470934604 2891121.3378061163 2830912.1131089623 1.11635158746473 0.7613874362829625 0.8345806354274056 0.7061226849170923 0.7495617298411401 0.9046610835317064 0.8248007885200265 0.9543733747800279 1.0212684895508928 1.0 21.4328355301715 1.6068161800168037 2.5905808333174614 1.0107973628119102 0.8312538994563722 0.29372576336762246 0.107048192401146 0.2896223956612226 4.42906564960818 0.07387901207069526 0.028714627707967327 40.44046866737793 -1.6068161800168037 -0.17954346335553806 AQS(ph)TDSLGTSGSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 AQS(0.5)T(0.5)DSLGTSGSLQSK;AQS(0.5)T(0.5)DSLGTSGSLQSK 396.48 8.859299999999996e-122 1514980000.0 1287970.0 1171180.0 1099160.0 1009690.0 970540.0 1389190.0 1387390.0 1241640.0 1591990.0 1302080.0 True False 1281035.7126269205 1210162.0183067396 1253912.1739300115 1137516.650474151 1094132.5161587289 1293158.565101513 1320276.6453555166 1334297.4817201684 1199665.3960730752 1218980.1396332285 1.050907780181196 0.9927659844161677 1.028656770656898 0.9331707822708345 0.897580264505323 1.0608528581036631 1.083099389751146 1.0946014937713726 0.9841549973357525 1.0 20.217243190207597 AQS(ph)YDIQAWK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSYDIQAWK 10 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 AQS(1)YDIQAWK;AQS(1)YDIQAWK 166.6 5.7663e-06 1449840000.0 1346120.0 1367430.0 1678870.0 1382080.0 1657150.0 2335000.0 1464620.0 1765410.0 2212100.0 1545150.0 True False 1338872.6394879923 1412944.0809211102 1915240.3030003614 1557051.1862921435 1868178.2298024194 2173586.9459987693 1393770.7352082669 1897153.8587703365 1666957.5956213605 1446537.2041305318 0.9255708291946398 0.9767768688468588 1.3240173135758042 1.0763989905313485 1.291483015070686 1.502613925028803 0.9635222179066033 1.3115140442659103 1.1523779622545667 1.0 20.464171998381094 4.330813873030314 6.491906341513042 1.214974915129563 0.9410985582580166 0.292781810691932 0.15591532460077984 0.22633732627425113 13.085041939252063 0.03572932269833305 0.09964951680340817 21419.724124378867 -4.330813873030314 -0.27387635687154643 AQSDGIWGEHEIDYILLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 AQSDGIWGEHEIDYILLVR 19 0 Q13907;Q13907-2 Q13907 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 0 ;;; 239.76 2.6885e-24 892270000.0 524059.0 636410.0 585700.0 630410.0 564737.0 659190.0 645530.0 537402.0 645600.0 653900.0 False True 521237.5245724283 657592.5221320314 668161.4690043381 710219.8413626067 636652.9094915534 613621.7468663501 614303.2477359253 577505.6661120629 486500.53059678536 612167.5421680447 0.8514622038378908 1.0742035093907627 1.0914683039842101 1.1601723261042252 1.0399978202646807 1.0023755011465574 1.0034887598913147 0.9433784484338653 0.7947179441657448 1.0 19.223567027967867 1.8185742197187085 1.7949173713195372 0.8949868820441604 1.047528952891735 0.2841175481501724 0.08809407183744679 0.4008821083434998 2.4787062790416585 0.06073577539271173 0.02622284691651467 65.85279609239267 -1.8185742197187085 0.15254207084757465 AQSELAAHQK ddPTM_BT-474_Trastuzumab_2h_R1 5 AQSELAAHQK 10 0 P25786;P25786-2;F5GX11;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 ;;;; 181.53 1.8774e-06 2590750000.0 2222910.0 2292620.0 2336230.0 2119370.0 2016640.0 2343910.0 2604940.0 2271910.0 3079990.0 2608280.0 False True 2210942.099548519 2368928.4707819438 2665150.8771248134 2387682.0246960977 2273447.150438254 2181881.0186706516 2478929.1003628364 2441451.460725224 2320967.7342515406 2441817.3373391456 0.9054494231570115 0.9701497464848746 1.0914620173960412 0.9778299089717991 0.9310471818156696 0.8935480084060067 1.0151984190038275 0.9998501621688377 0.9505083360497002 1.0 21.21952385139748 -0.2823975268099269 0.5613324915882473 1.002541086449537 0.9736461635304915 0.018766539954300665 0.0546472878179908 44.14105708504464 13.307020721814826 0.3184323694348832 0.024883325203096836 0.5219182380107431 0.2823975268099269 -0.028894922919045496 AQSGSDS(ph)SPEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQSGSDS(0.515)S(0.485)PEPK;AQSGS(0.012)DS(0.64)S(0.348)PEPK 164.56 5.9754e-05 447119000.0 1306580.0 1077300.0 957670.0 886000.0 890830.0 998450.0 1183820.0 1118430.0 1731910.0 1345790.0 True False 1299545.5184546849 1113157.2792583974 1092501.6117831394 998167.5091563743 1004271.9201369158 929429.5015984892 1126554.103968436 1201892.9258724647 1305103.9869050179 1259900.5300112132 1.0314667606680972 0.8835279077535512 0.8671332265995761 0.7922589802763957 0.7971041333937511 0.7377006989513826 0.8941611477522036 0.9539585842239211 1.0358785918547098 1.0 20.264878405807863 1.6561546113739194 2.5347583419860253 1.013238961537036 0.8476188774065706 0.43877146655019394 0.07437979921628392 0.23615229068386565 3.429248876377852 0.05311521162578259 0.021692430343874258 45.305884279272185 -1.6561546113739194 -0.16562008413046547 AQSGSDSS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQSGSDS(0.131)S(0.869)PEPK 209.3 5.9539e-08 404190000.0 1527100.0 1319500.0 1133300.0 1088700.0 1114500.0 1168600.0 1295100.0 1378500.0 2121500.0 1567700.0 True False 1518878.26327676 1363418.7598454051 1292858.789179813 1226529.308373075 1256424.9688409583 1087817.432588506 1232451.0652375533 1481370.6698811643 1598684.7516435583 1467648.0438245025 1.0349063385242951 0.9289820986593699 0.8809051970053997 0.835710791517084 0.8560805665416049 0.7411977532118623 0.8397456532057536 1.0093500796150707 1.0892834684517352 1.0 20.48507460677801 1.633180968003866 4.602908437652627 1.0452604163489636 0.8693550548004402 0.4973673544003424 0.07348257121776018 0.13502554228684724 6.42290814256441 0.04428515625784142 0.020562010209046 42.97154494109019 -1.633180968003866 -0.17590536154852343 AQSNGSGNGS(ph)DSEMDTSSLER ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSNGSGNGSDSEMDTSSLER 21 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 AQSNGSGNGS(0.999)DSEMDTSSLER;AQSNGSGNGS(1)DSEMDTSSLER 262.1 1.1783999999999999e-36 1099780000.0 683910.0 591880.0 528640.0 488350.0 508390.0 670310.0 606710.0 576610.0 880520.0 601750.0 True False 680227.9045495447 611580.3680009841 603067.9169787479 550175.0599283458 573130.4530363881 623973.0474400142 577361.1194427271 619639.5661662525 663527.6443635088 563345.7998159062 1.2074784346876004 1.08562159902646 1.0705110736173455 0.9766205057499951 1.017368822530814 1.1076199514470866 1.024878715047491 1.0999275513702993 1.1778336584391693 1.0 19.103661241383108 4.757054058318559 2.6135284438063806 1.0607216021326276 1.2415530229310279 0.38364290283121816 0.056093056205665744 0.5656864593167178 4.832827732040167 0.014147216857467074 0.22869481851723744 57154.97752615904 -4.757054058318559 0.1808314207984003 AQSPGS(ph)PLHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSPGSPLHAR 11 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 AQSPGS(1)PLHAR;AQS(0.002)PGS(0.998)PLHAR 102.64 0.0018305 979560000.0 762930.0 966110.0 879290.0 956020.0 935780.0 884820.0 799040.0 694680.0 645960.0 778440.0 True False 758822.4696494912 998266.3873241713 1003086.3890743118 1077052.0339770617 1054946.0361973902 823654.4760422396 760387.3825707784 746520.549113564 486771.8134205387 728759.2927439858 1.0412525469038056 1.3698163402697956 1.3764303235124544 1.4779256260618714 1.4475918821223104 1.1302147145746115 1.0433999128953866 1.0243719106520097 0.6679459435607394 1.0 19.475082849333393 2.1833821904065815 1.4362931047937113 0.8871359248257984 1.349854535970767 0.6380573962963292 0.14604575379068213 0.2671936380052533 1.0653177860302818 0.09035652804845981 0.05050076478761096 152.53945500648703 -2.1833821904065815 0.4627186111449686 AQSPSYVISTGVS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQSPSYVISTGVSPSR 16 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 AQSPSYVISTGVS(0.988)PS(0.012)R 185.2 1.1738e-12 0.0 144600.0 159610.0 140240.0 146690.0 135530.0 184000.0 188790.0 156770.0 257820.0 162950.0 True False 143821.48966657047 164922.52236371735 159984.57301206834 165260.93895953556 152788.9421507537 171280.51308941058 179657.50645216412 168468.97346192974 194283.71561100258 152550.3914914863 0.9427802069888297 1.081101928033541 1.048732628267276 1.0833203202153605 1.0015637498988699 1.1227798985948167 1.1776928573938836 1.1043496631821612 1.2735707441422421 1.0 17.218926356759813 2.6086327449761404 5.232000989938817 1.1446442496153852 1.0384496759829192 0.3290750365262072 0.0740274070082685 0.2607294593071634 10.032123458008327 0.022673282579818238 0.021261255403797672 406.09977136005733 -2.6086327449761404 -0.1061945736324661 AQST(ph)DSLGTSGSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 AQS(0.18)T(0.761)DS(0.059)LGTSGSLQSK;AQS(0.032)T(0.968)DS(0.001)LGTSGSLQSK 374.25 2.018499999999999e-103 3265600000.0 3385000.0 3289600.0 3047700.0 2693100.0 2837900.0 4001900.0 3569300.0 3547900.0 4526900.0 3969100.0 True False 3366775.5361088533 3399092.347394806 3476789.668916712 3034046.1838702355 3199289.743448867 3725258.0724593005 3396639.3229498854 3812662.3138711536 3411306.15235221 3715788.6398825324 0.9060729396641052 0.9147701004603592 0.9356801491880938 0.8165281930476409 0.8609988493721232 1.0025484314352895 0.9141099379261959 1.0260708246289498 0.9180571025320892 1.0 21.825237010531943 2.739817724259161 24.99045578798216 0.9732611595912442 0.8871738398926043 0.47579857095931366 0.044783319985859195 100.73324240298336 2002518.9320204307 0.014067600226092694 0.014187797494977915 549.310276978092 -2.739817724259161 -0.08608731969863981 AQSTDS(ph)LGTSGSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 3 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 AQS(0.031)T(0.031)DS(0.938)LGTSGSLQSK;AQSTDS(0.861)LGT(0.074)S(0.065)GSLQSK;AQSTDS(1)LGTSGSLQSK 348.63 3.991999999999999e-87 425170000.0 766230.0 764760.0 696910.0 647050.0 719620.0 947590.0 905800.0 816550.0 987350.0 895330.0 True False 762104.7028161562 790214.5742928176 795028.8703496889 728966.4636564695 811259.3414780899 882085.3336869273 861982.9935079718 877485.1073568856 744030.8223121697 838189.2728694214 0.9092274591002573 0.9427638838512342 0.9485075699287119 0.8696919505554596 0.967871300357805 1.0523701057008688 1.0283870498092822 1.0468818150737487 0.8876644528807751 1.0 19.676916532439442 3.0012653875837323 24.631274720661988 1.0112968429396216 0.9212129425441928 0.4117392383045142 0.04760826508436744 32.2834990040558 628378.3048232555 0.013682421976979452 0.01622543666924756 1002.9179114275579 -3.0012653875837323 -0.0900839003954288 AQT(ph)PPGPSLSGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 AQTPPGPSLSGSK 13 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQT(0.996)PPGPS(0.004)LSGSK;AQT(1)PPGPSLSGSK;AQT(0.987)PPGPS(0.012)LS(0.002)GSK;AQT(1)PPGPSLSGSK;AQT(0.998)PPGPS(0.002)LSGSK 161.09 0.00047786 13037600000.0 2899570.0 2399260.0 2200780.0 1912720.0 1993280.0 2740050.0 2607560.0 2626670.0 3234200.0 2650900.0 True False 2883959.037292512 2479117.9187167054 2510630.69447732 2154870.1558843977 2247112.3929038206 2550636.7928839065 2481422.360953465 2822685.453360001 2437174.746059674 2481717.292450328 1.1620820171845723 0.9989525907154977 1.0116505623404206 0.8682979976969024 0.9054667103863109 1.027770891004886 0.9998811583020516 1.1373920236390092 0.9820517242128434 1.0 21.24290734796327 -0.21128251917094099 8.248106523979203 0.9999055470495853 1.0121132659486394 0.0009837552469593724 0.08468389518158356 0.0 0.0 0.08684203751744644 0.020468864540214324 0.6147768152621604 0.21128251917094099 0.012207718899054032 AQT(ph)PPGPSLSGSKS(ph)PCPQEK ddPTM_BT-474_Trastuzumab_2h_R1 3 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AQT(1)PPGPS(0.014)LS(0.011)GS(0.244)KS(0.732)PCPQEK;AQT(1)PPGPSLS(0.001)GS(0.078)KS(0.921)PCPQEK;AQT(0.828)PPGPS(0.101)LS(0.066)GS(0.04)KS(0.965)PCPQEK 146.8 2.9615e-07 9562600000.0 7168800.0 4556400.0 4157800.0 4004600.0 3842970.0 6367400.0 6424100.0 6143100.0 9417300.0 6021800.0 True False 7130203.977328554 4708057.019598037 4743182.099754541 4511581.949399107 4332349.450432248 5927236.625247349 6113341.74055483 6601529.31602974 7096532.600354871 5637483.5684776455 1.264784879764005 0.8351344997125034 0.8413651307608861 0.8002829444374632 0.7684899472979152 1.0513975878155772 1.0844096778814534 1.1710063959995587 1.2588121125595102 1.0 22.426619892688137 2.4635107484427725 3.159264996283378 1.1435874472160186 0.8895428803717987 0.3499407009566893 0.14453508334930623 0.2571521235035401 5.335292596895038 0.05264773107947676 0.04494058832524663 290.74399153776756 -2.4635107484427725 -0.25404456684421983 AQTAPNKDVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 AQTAPNKDVQR 11 1 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;; 152.38 3.0072e-05 682176000.0 771450.0 1218260.0 1244800.0 1248890.0 1040970.0 995610.0 1207440.0 971360.0 1890000.0 1233880.0 False True 767296.5989161531 1258809.0476462774 1420057.020004438 1406999.3459484219 1173531.3591874153 926785.8241138469 1149031.5143312733 1043847.8156661371 1424234.824702486 1155132.7220221849 0.6642497301720597 1.0897527389256152 1.2293453322995427 1.2180412857540017 1.0159277257188435 0.8023197736892155 0.9947181760376151 0.903660502179151 1.2329620636226188 1.0 20.139627192742694 3.003018574581579 24.994448194379263 0.9685228734078981 1.0723271432919486 0.016804201127234242 0.1778071527616033 282.5925432161433 2339883.116260975 0.05223541350281205 0.06211991676284688 1006.9747357918171 -3.003018574581579 0.10380426988405045 AQTAPTKTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 AQTAPTKTSPR 11 1 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 AQT(0.001)APT(0.003)KT(0.009)S(0.987)PR;AQTAPT(0.001)KT(0.034)S(0.965)PR;AQTAPT(0.005)KT(0.153)S(0.842)PR;AQTAPT(0.003)KT(0.076)S(0.921)PR;AQT(0.001)APT(0.075)KT(0.414)S(0.51)PR;AQT(0.001)APT(0.004)KT(0.022)S(0.974)PR 101.53 0.0026420000000000003 3550240000.0 4065200.0 4667890.0 4417270.0 4289840.0 4455420.0 5079460.0 5162930.0 4693730.0 6344120.0 5064640.0 True False 4043313.4148861766 4823257.89685091 5039183.220400866 4832933.304152792 5022791.327656694 4728328.885962704 4913179.351592086 5043999.9668780025 4780696.632852658 4741410.339143551 0.8527659758755508 1.017262281020407 1.0628025966871077 1.019302899024296 1.0593454201148027 0.9972410206573241 1.0362274091804429 1.063818485659503 1.0082857822670972 1.0 22.17688482394302 4.733524928443541 4.224731575338982 1.0346868657734543 0.8392703745100467 0.828828268647736 0.02409092354055924 0.07282935279571622 2.9823401207840545 0.0054847803527781755 0.04274987131021898 54140.83237541365 -4.733524928443541 -0.19541649126340754 AQTLPTSVVTITSESS(ph)PGKR ddPTM_BT-474_Trastuzumab_2h_R1 5 AQTLPTSVVTITSESSPGKR 20 1 Q01082;A0A087WUZ3 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 1 AQTLPTSVVTITSES(0.34)S(0.659)PGKR;AQTLPTSVVTITS(0.001)ES(0.165)S(0.834)PGKR;AQTLPTSVVTITS(0.001)ES(0.332)S(0.666)PGKR;AQTLPTSVVTITSES(0.194)S(0.806)PGKR;AQTLPTSVVTITSES(0.056)S(0.944)PGKR 293.04 9.8745e-55 5586690000.0 2002090.0 1670620.0 1508720.0 1480350.0 1473550.0 2271860.0 2119680.0 1953770.0 2922460.0 2393210.0 True False 1991310.9698931118 1726225.576788886 1721134.6619706755 1667762.1582162958 1661197.8580848766 2114811.6655831966 2017142.9804360536 2099570.2384430347 2202258.8919576863 2240473.2888698387 0.8887903193425655 0.7704736250882266 0.7682013753615723 0.7443793980947502 0.7414495260163687 0.943912911655363 0.9003200307974037 0.937110140465955 0.9829436052185969 1.0 21.095372095973158 2.7304265450855505 24.665278135392725 0.9436730921221922 0.7790520621857122 0.7699894115363082 0.046354579902016316 248.3869882201351 753191.9894508941 0.01504187209733366 0.014410999057063929 537.5595046657596 -2.7304265450855505 -0.16462102993647998 AQTPPGPSLSGSKS(ph)PCPQEK ddPTM_BT-474_Trastuzumab_2h_R1 5 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQTPPGPSLSGS(0.001)KS(0.999)PCPQEK;AQTPPGPSLS(0.007)GS(0.004)KS(0.99)PCPQEK;AQTPPGPSLSGS(0.011)KS(0.989)PCPQEK;AQTPPGPS(0.079)LS(0.168)GS(0.187)KS(0.566)PCPQEK;AQTPPGPSLS(0.004)GS(0.207)KS(0.788)PCPQEK 253.21 2.582e-36 24550720000.0 15787900.0 11487410.0 11571110.0 10257640.0 10480830.0 15066700.0 14939500.0 14481900.0 21104900.0 14620700.0 True False 15702899.700600587 11869761.497564005 13200221.71010889 11556256.172260469 11815501.575753596 14025174.492196836 14216819.310567843 15562612.91559815 15903880.186171154 13687594.40858896 1.1472359007618624 0.8671912056449987 0.9643931078075892 0.8442868649737986 0.8632270377868132 1.0246632149909443 1.0386645663351037 1.1369867086237313 1.1619193052792005 1.0 23.706365579780755 2.3010204719153795 2.1877673117268754 1.107394428823406 0.9313167955822839 0.35926174669752875 0.09140287079120908 0.2932602466822746 2.874735961809978 0.0393858074066036 0.028148505538161814 199.99561419977687 -2.3010204719153795 -0.17607763324112224 AQVADVVVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AQVADVVVSR 10 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 185.08 3.4626e-06 634820000.0 661240.0 819230.0 708610.0 737330.0 754300.0 776010.0 816050.0 691000.0 839170.0 817570.0 False True 657679.95731067 846497.5753150065 808376.1286514659 830675.9023998515 850355.6339136263 722366.2552310516 776574.5438862682 742565.9288269018 632367.797801897 765391.9826431082 0.8592720752568128 1.1059660860201572 1.056159650196389 1.0852947525414363 1.1110067170773272 0.943786022864419 1.0146102408919198 0.9701773021747866 0.8262012304050504 1.0 19.54583926352578 1.9278328370194349 1.3316050843198237 0.921556711756518 1.0429169062184414 0.2146361223697406 0.08321761035172653 0.6062878694329343 1.9942019156097426 0.059782908106405956 0.026517316447802995 84.69013731409437 -1.9278328370194349 0.12136019446192337 AQVARPGGDTIFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AQVARPGGDTIFGK 14 1 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 ; 189.09 6.9124e-07 9766300000.0 5058300.0 5650900.0 5239200.0 5272000.0 4880100.0 5745200.0 6083500.0 5064900.0 7500000.0 6246700.0 False True 5031066.67482996 5838986.790458818 5976833.820057245 5939434.659449667 5501551.808381125 5348047.846746096 5789217.863773184 5442868.557041072 5651725.494851137 5848030.257931065 0.860301067698283 0.9984535874348491 1.0220251189623202 1.0156299467491023 0.9407529656536836 0.9145041340189896 0.9899432130881813 0.9307182618727879 0.966432327737412 1.0 22.47951934519287 3.183493336214462 24.99974227228311 0.9524212349133222 0.9792658746755298 0.019192731356271753 0.04856370163450838 267.7460513290989 121551.64271887417 0.013985065574752036 0.016715357692973085 1525.7849830849527 -3.183493336214462 0.026844639762207634 AQVLATIHGHAGAFPAAGDAGEGAPGGGSS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.204)S(0.796)PER 116.13 5.5725e-06 252450000.0 53400.0 54757.0 59777.0 61216.0 52901.0 60520.0 57085.0 35934.0 66632.0 62405.0 True False 53112.50033329773 56579.55364369454 68193.08200900181 68965.93932338218 59637.62878120732 56336.394848756085 54323.580464123 38615.577549154725 50211.43642305611 58422.259472391524 0.9091141084400712 0.9684588400835852 1.167244858806388 1.1804736746954 1.0208031890548523 0.9642967484915377 0.929843880649542 0.6609737093000178 0.8594572835168146 1.0 15.834230534816484 2.2447953784777726 2.188665431074912 0.8050688698891507 1.0542620129803788 0.3643846200512453 0.11263674160832124 0.27339823732930013 2.6643654134258283 0.05368642993568693 0.03641983665560885 175.7095548454367 -2.2447953784777726 0.2491931430912281 AQVLVEDISDILEEHAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 AQVLVEDISDILEEHAEK 18 0 Q5VV41;Q5VV41-2;B0QZD3;B0QZD4 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 0 ;;; 267.36 2.895e-31 288003000.0 341008.0 337210.0 319793.0 293667.0 295090.0 389356.0 389600.0 329357.0 482930.0 389004.0 False True 339172.0508175503 348433.8310022508 364817.07470941497 330845.2120896445 332667.96236453886 362440.7361654371 370753.5595834684 353935.29178095853 363918.3724304614 364177.43167691986 0.9313373683145937 0.9567694225252376 1.0017564049192993 0.9084725831752088 0.9134776991333866 0.9952311830431506 1.018057483343401 0.9718759620858449 0.999288645522965 1.0 18.474281994728976 2.7124975060982033 23.749140003332524 0.9950075672441947 0.9445799381746233 0.5145172302525877 0.026408067378539304 381.6021271391022 347721.19558310416 0.009024067868793732 0.008511434745583957 515.8192030127256 -2.7124975060982033 -0.050427629069571434 AQVPGPLT(ph)PEMEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AQVPGPLTPEMEAR 14 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 AQVPGPLT(1)PEMEAR 121.23 0.0012941 145080000.0 249320.0 242970.0 219840.0 211960.0 208390.0 252440.0 243330.0 229880.0 332550.0 227630.0 True False 247977.68882205602 251057.10957153342 250791.5611164649 238794.11426725154 234927.2312757 234989.4169798411 231559.19828913116 247034.81290698776 250597.50844169926 213102.45851615223 1.16365475343993 1.178105176822746 1.176859069870637 1.120560109582931 1.102414457869305 1.1027062691631497 1.0866096989283678 1.1592302342596559 1.1759484624749417 1.0 17.701187711708535 -2.248914946579226 2.447629318662163 0.4343833052516268 1.1390805534686173 0.6161200706563403 0.03329109539672461 876702.8850727065 939653.7298445147 2587194.5280976524 0.009260021203327447 0.005637480509778436 2.248914946579226 0.7046972482169904 AQVWLEQVCAHLGLGVQEPHPGER ddPTM_BT-474_Trastuzumab_2h_R1 2 AQVWLEQVCAHLGLGVQEPHPGER 24 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2;C9J8U2;G5E977 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 0 ; 240.75 8.557699999999997e-38 585440000.0 139892.0 163324.0 163448.0 164296.0 154455.0 179365.0 178171.0 121917.0 194154.0 179132.0 False True 139138.83701546222 168760.14060855715 186460.05768451584 185095.85675435152 174123.92872349086 166965.91972979414 169552.1880506833 131015.06562198194 146307.34823031008 167699.6423973792 0.8296907198272993 1.0063237953046136 1.1118691430640153 1.1037343557104937 1.0383082887612172 0.995624780964968 1.0110468074160488 0.7812483303424708 0.8724368528086769 1.0 17.355520086940277 1.7620597660434831 24.99999999975541 0.8638448958594678 1.0209867792205665 0.2989316197922903 0.08853939506032085 13.18129141945945 14033.556732788853 0.041406380263447534 0.022962917767601357 57.817560837739556 -1.7620597660434831 0.1571418833610987 AQYDELAR ddPTM_BT-474_Trastuzumab_2h_R1 10 AQYDELAR 8 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;;;; 237.76 2.7435e-08 36410530000.0 11662560.0 14083320.0 13243240.0 13415370.0 12774290.0 13497940.0 13857400.0 12093890.0 15232480.0 13390330.0 False True 11599770.072792213 14552074.79265327 15107773.079694407 15113754.466491135 14401020.112351168 12564859.178533029 13187064.621591292 12996397.48332909 11478639.408774672 12535747.675361715 0.9253353188969246 1.16084617922348 1.2051752692332711 1.2056524156270585 1.148796265312163 1.002322278967734 1.0519567690014775 1.0367468953505465 0.9156724996415867 1.0 23.57954471027315 2.7382413221951425 24.790374197205747 1.0105498697144102 1.1393939038005363 0.374395528881764 0.08165083345151607 28.817437243361365 2237342.9107757886 0.026207052503412105 0.026167045060612265 547.3200049232701 -2.7382413221951425 0.1288440340861261 AQYEQTLAELHR ddPTM_BT-474_Trastuzumab_2h_R1 3 AQYEQTLAELHR 12 0 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 0 ;; 165.73 5.3829e-05 1884600000.0 1191470.0 1440470.0 1368610.0 1416030.0 1367280.0 1493480.0 1486320.0 1174030.0 1504980.0 1430200.0 False True 1185055.257904761 1488415.1731674983 1561298.391828627 1595299.252811173 1541395.0034965149 1390239.2428737653 1414421.0233062138 1261642.0802035446 1134097.8446988072 1338923.4115441765 0.8850806907155654 1.1116507190287408 1.1660849144672032 1.191479093618446 1.151219696516344 1.038326188702912 1.0563868038388888 0.9422809918220015 0.8470221932939804 1.0 20.352642007995694 1.868986345799194 1.850102854128282 0.9146795082901106 1.1042078539714373 0.39817931149966146 0.08810954765769266 0.3237870452195641 2.083735814494078 0.05918105482961016 0.026866524924045745 73.9582022264077 -1.868986345799194 0.1895283456813267 ARAPS(ph)PGDYK ddPTM_BT-474_Trastuzumab_2h_R1 6 ARAPSPGDYK 10 1 P55198 P55198 MLLT6 Protein AF-17 1 ARAPS(0.988)PGDY(0.012)K;ARAPS(0.995)PGDY(0.005)K;ARAPS(0.988)PGDY(0.012)K;ARAPS(0.956)PGDY(0.044)K;ARAPS(0.995)PGDY(0.005)K;ARAPS(0.976)PGDY(0.024)K 103.83 0.0016726 8068750000.0 5687690.0 6211560.0 4256490.0 3752960.0 4272630.0 4977690.0 5750510.0 5444990.0 9320780.0 6118470.0 True False 5657068.109001771 6418308.019632685 4855766.7939256895 4228084.3512003375 4816724.104637903 4633594.006521894 5472335.862218511 5851322.802898988 7023798.661053143 5727984.006314292 0.9876193967660618 1.1205177969347346 0.847727016795594 0.7381452787821113 0.8409108858069692 0.8089397598551274 0.9553685653078003 1.0215326712589863 1.2262252571428969 1.0 22.449596033636666 1.65363320548594 2.647696380328222 1.113634464417377 0.8915409083694965 0.37363007484813404 0.11230507130913613 0.2595782967220811 4.159125894500542 0.08026731151709102 0.03311045244409459 45.043611650193334 -1.65363320548594 -0.2220935560478805 ARDDLITDLLNEAK ddPTM_BT-474_Trastuzumab_2h_R1 7 ARDDLITDLLNEAK 14 1 P36543;C9J8H1;P36543-2 P36543 ATP6V1E1 V-type proton ATPase subunit E 1 0 ;;;;;; 305.98 1.713e-44 2533133000.0 4005214.0 3882218.0 3479082.0 3242587.0 3243056.0 4314463.0 4229036.0 3961036.0 5535687.0 4347341.0 False True 3983650.372845107 4011435.27927966 3968906.5048771584 3653098.181730062 3656039.958501111 4016214.3279634635 4024461.372193619 4256628.620053254 4171491.113255466 4069889.9754341193 0.9788103356332591 0.9856372785241635 0.9751876657190987 0.8975913854625517 0.8983142002778921 0.9868115237034312 0.9888378792756788 1.045882971221898 1.0249640993821973 1.0 21.956558362822793 2.212030698920159 2.295256298079039 1.0260439822376368 0.9486783603918806 0.49728816174715385 0.03200404922572349 0.2575219883459228 2.7497315554784394 0.016203181323527632 0.010814782165732967 162.94112065568277 -2.212030698920159 -0.07736562184575624 ARDS(ph)DEENDPDDEDAVVNAVGCLGPFSGFLAPELQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ARDSDEENDPDDEDAVVNAVGCLGPFSGFLAPELQK 36 1 Q9Y2I9;F8VZ81;Q9Y2I9-2;Q9Y2I9-3 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 ARDS(1)DEENDPDDEDAVVNAVGCLGPFSGFLAPELQK;ARDS(1)DEENDPDDEDAVVNAVGCLGPFSGFLAPELQK 169.35 5.0547000000000005e-18 128424000.0 185073.0 190694.0 171597.0 164292.0 159466.0 208700.0 204497.0 184806.0 261600.0 216370.0 True False 184076.58753154322 197041.13451304272 195756.3660521383 185091.35035476153 179773.04987096688 194273.06022695627 194604.69885559706 198597.162145853 197132.1852604074 202561.0813563231 0.9087460745123888 0.972749223067336 0.9664066006232723 0.9137557378515829 0.887500445136003 0.9590838423952356 0.9607210701707796 0.9804309930420583 0.9731987208028092 1.0 17.62799748604971 2.1807293565256343 2.0696779106951824 0.9811630421080529 0.9334761999537438 0.44562188043149553 0.025597332975124166 0.3529463916012804 3.0134192545210707 0.013575868841982478 0.008490090925346873 151.61052670875088 -2.1807293565256343 -0.047686842154309184 AREEEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AREEEEK 7 1 P40222;Q8N3L3 P40222;Q8N3L3 TXLNA;TXLNB Alpha-taxilin;Beta-taxilin 0 64.265 0.067901 117920000.0 133500.0 112260.0 89162.0 92390.0 108610.0 88871.0 119030.0 126400.0 205730.0 123060.0 False True 132781.25083324427 115996.5062373969 101715.23459000295 104086.56452703981 122440.8397180946 82727.55694983149 113272.06416124309 135832.60984619465 155030.5981407632 115206.20544303338 1.152552940378731 1.006859880431999 0.8828971859532221 0.9034805384550925 1.0627972620679584 0.7180824733502591 0.9832114834929906 1.179039005093875 1.3456792326818021 1.0 16.813858902334893 1.7369723594701447 4.376224770296353 1.1994166103800037 0.9487814681264249 0.3512714319962823 0.13383267666677096 0.1799499200988118 7.798898485698358 0.0691076147421376 0.03473804256653176 54.572312761651844 -1.7369723594701447 -0.25063514225357875 AREEEEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 AREEEEQK 8 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 ; 132.84 0.00086181 393680000.0 507050.0 382090.0 339600.0 292520.0 322970.0 304050.0 406320.0 399250.0 570440.0 440400.0 False True 504320.09913855087 394807.63467171724 387412.72814388404 329553.0020072488 364098.3151068327 283031.73915671324 386664.7493068661 429044.06235042104 429862.7055043841 412293.29495459085 1.2232071326653413 0.9575892683755639 0.9396532344445546 0.7993169087155422 0.8831051088204909 0.6864815475301043 0.9378390433185496 1.0406282799182438 1.0426138643649985 1.0 18.653311473585617 -0.17387122987358472 7.325830930464088 0.9999996781900713 0.9390494026891029 0.01192729382394253 0.13732461288689798 0.0 0.0 0.1377638852251733 0.03247125914844176 0.6700832624482574 0.17387122987358472 -0.06095027550096843 AREEEEQKEGGDGAAGDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AREEEEQKEGGDGAAGDPK 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 122.53 1.857e-05 1166500000.0 1109300.0 649910.0 612680.0 554610.0 562640.0 1007100.0 884780.0 880460.0 1608900.0 944310.0 False True 1103327.6520548172 671541.8614711093 698940.0184899737 624823.5691345554 634288.8689714468 937481.5474583979 841979.8112121697 946164.3960852893 1212408.1531554644 884043.3273355344 1.248047033373574 0.7596255078301483 0.7906173791238791 0.7067793509824283 0.7174861789672278 1.0604475125488746 0.9524191690353659 1.0702692581108948 1.3714352177846378 1.0 19.7537575528774 2.010867046560191 1.3502244763699558 1.168444473695077 0.8418293860479525 0.3199214682645378 0.17827646822136387 0.48581104032853345 1.6485691236987197 0.12425070903916488 0.05889388718213727 102.53379847060872 -2.010867046560191 -0.32661508764712444 AREESWGPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 AREESWGPPR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;; 158.94 7.146e-06 1388010000.0 751513.0 789713.0 677810.0 695625.0 660019.0 773000.0 717260.0 575856.0 940500.0 805070.0 False True 747466.9375089428 815998.11981341 773239.7563698658 783691.053675961 744068.5074108928 719564.3294462736 682563.3936007161 618829.2988575185 708726.3770543323 753689.7433448968 0.9917435444877662 1.0826711216633873 1.0259390726722717 1.0398059156250654 0.9872344873749976 0.954722199419653 0.9056291393478172 0.8210663662625104 0.9403423402167902 1.0 19.52361123419917 2.6986653387651702 1.634525643675401 0.893985634033314 1.0375360428624159 0.520165902195749 0.04876673407600821 0.2396310875623589 1.2814337529001218 0.01955340521781529 0.018371060401532573 499.6493638023601 -2.6986653387651702 0.14355040882910186 AREETDKEEPASK ddPTM_BT-474_Trastuzumab_2h_R1 6 AREETDKEEPASK 13 2 P05455 P05455 SSB Lupus La protein 0 ;;;;; 266.2 1.2047e-24 6089940000.0 5325390.0 4356790.0 3790830.0 3482130.0 3552590.0 5210480.0 5299910.0 4946850.0 7954230.0 5109560.0 False True 5296718.691946455 4501803.121414823 4324545.913514966 3922967.300969166 4004991.278649356 4850291.781750608 5043533.105677671 5316009.066595317 5994016.597721296 4783463.506285601 1.1072978156907485 0.9411178982549635 0.9040616506914697 0.8201102184252645 0.8372576216765715 1.013970687845155 1.054368471516576 1.1113305368818924 1.253070414323219 1.0 22.189624161154555 2.2415006457339235 2.0122326561861965 1.127058384743704 0.9179923257376879 0.4555739122923991 0.0940402552816034 0.28739666194041125 2.352231032581033 0.04641991013069445 0.03054662482214976 174.38159502693972 -2.2415006457339235 -0.20906605900601605 ARENIPTDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARENIPTDR 9 1 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 89.171 0.011206 429030000.0 253270.0 340150.0 307550.0 313900.0 264930.0 322100.0 295430.0 261610.0 389970.0 343910.0 False True 251906.42246094212 351471.6871249829 350850.3667274784 353639.70781510766 298667.2651368646 299833.985141843 281138.9222478034 281132.66662866314 293867.11883027945 321961.36936383566 0.7824119488579785 1.0916579458568485 1.0897281478853336 1.0983917372256966 0.9276493814366676 0.9312731702386711 0.8732070024528302 0.8731875727331945 0.9127403061147749 1.0 18.296528070942507 3.0931678113324974 7.055853160263344 0.9060874544618082 1.025962636710741 0.19839740300545383 0.09200008374569976 0.29445450920648975 19.05939144428798 0.02646471694909922 0.03171796233379467 1239.2753498647253 -3.0931678113324974 0.1198751822489329 ARENIQK ddPTM_BT-474_Trastuzumab_2h_R1 3 ARENIQK 7 1 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PK06;H0YCK7;E9PIZ1;E9PK72 P29692 EEF1D Elongation factor 1-delta 0 ;; 130.27 0.0032645000000000005 1004530000.0 1185170.0 1298910.0 1157830.0 1016390.0 1002970.0 1124870.0 1386020.0 1190300.0 1858320.0 1446730.0 False True 1178789.1764047653 1342143.4341423223 1320842.3999612313 1145064.8697871843 1130692.2844310594 1047110.384559158 1318972.9174894253 1279126.2302209293 1400361.936212233 1354398.4527921302 0.8703414966065994 0.9909516888294254 0.9752243863231517 0.8454416552430352 0.8348298701169554 0.7731184145998622 0.9738440816809306 0.9444238714124155 1.033936455941269 1.0 20.369220799597127 1.7052780105909495 2.035571583092224 1.0073437916708377 0.8891189594345197 0.3643010248432411 0.06557183874917079 0.3687127803146157 3.1825432708789285 0.05054872596664628 0.020410873733439045 50.73153587494603 -1.7052780105909495 -0.11822483223631797 AREQAEAEVASLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 AREQAEAEVASLNR 14 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4 P06753-2;P06753-3 TPM3 Tropomyosin alpha-3 chain 0 ;;; 307.03 6.9303e-45 2558340000.0 683120.0 929650.0 839280.0 875980.0 862640.0 939370.0 1028460.0 832060.0 1223700.0 1074050.0 False True 679442.1578217673 960592.8382647068 957443.3288474648 986878.9781837472 972492.0907321362 874433.5629391273 978709.4607012679 894152.5423150689 922135.5317399102 1005503.2094595333 0.6757235098105487 0.9553354273041393 0.9522031554350769 0.9814777008162939 0.9671695540930785 0.8696477094380861 0.9733528958374312 0.8892587650671783 0.9170886010752428 1.0 19.93948625590425 4.740545892913737 24.886208069008788 0.9403022330256859 0.6757234136649245 0.8068785206574082 0.039468269424397864 69.1930549667588 867295.0590432944 0.009312634577465808 0.06087169219790311 55023.20617476827 -4.740545892913737 -0.26457881936076144 ARFEELCSDLFR ddPTM_BT-474_Trastuzumab_2h_R1 7 ARFEELCSDLFR 12 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 ;;;;;; 211.77 2.5519e-08 12306030000.0 5053147.0 7099210.0 5780680.0 4851300.0 4486420.0 4491325.0 5256540.0 4502756.0 10034170.0 6508060.0 False True 5025941.418009406 7335502.913286926 6594549.497428701 5465474.082585003 5057738.993905295 4180850.274191828 5002261.078267168 4838774.517251683 7561383.254489389 6092710.038969507 0.8249106532007997 1.2039803086587753 1.0823671987095045 0.8970514020242801 0.8301296076057375 0.6862053581166252 0.821023985430501 0.7941908422200396 1.2410541788672231 1.0 22.538652651334584 3.6596282840917187 4.910815854421757 0.8650211359923516 1.053415625920493 0.11338792858123936 0.16609052874753477 0.3421062217723271 14.808385074496567 0.044004533213105865 0.06989431969903184 4566.971317795423 -3.6596282840917187 0.18839448992814134 ARFEELNADLFR ddPTM_BT-474_Trastuzumab_2h_R1 9 ARFEELNADLFR 12 1 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;;;;;;;; 202.92 1.1959000000000005e-07 21018135000.0 10360013.0 15481640.0 12790149.0 10778472.0 10339495.0 10336421.0 12691667.0 11008829.0 20512430.0 13883901.0 False True 10304235.841113653 15996937.028550986 14590890.805231955 12143025.450058378 11656168.401261775 9621888.5455878 12077722.580333788 11830363.721680954 15457416.47897991 12997818.551574314 0.7927665554206086 1.2307401403609697 1.1225645863062679 0.9342356489957 0.896778821385375 0.7402694927159438 0.9292115082550462 0.9101807103045029 1.1892315943360885 1.0 23.63176617754925 3.7171079479045197 19.575815645941184 0.9271551623419869 1.066895227686124 0.0881473734948438 0.14672173095415225 89.2802630960466 81469.24159814935 0.03842056884082561 0.05969358765146053 5213.242749656386 -3.7171079479045197 0.1397400653441372 ARGDS(ph)EALDEES ddPTM_BT-474_Trastuzumab_2h_R1 6 ARGDSEALDEES 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 ARGDS(1)EALDEES;ARGDS(1)EALDEES;ARGDS(1)EALDEES;ARGDS(1)EALDEES;ARGDS(1)EALDEES;ARGDS(1)EALDEES 194.51 3.7628e-06 18056470000.0 3640300.0 4211920.0 3832800.0 3951660.0 4133850.0 4196610.0 4185600.0 3867170.0 4689050.0 4230370.0 True False 3620701.0292753554 4352111.211040594 4372424.924705179 4451939.750827174 4660271.294251416 3906508.2284573433 3983126.537455253 4155757.862491365 3533496.457550896 3960384.1647980283 0.9142297511079973 1.0989113757509792 1.1040406038307056 1.1241181576268153 1.1767220300682826 0.9863962852847553 1.0057424663140941 1.0493320065840885 0.8922105307253942 1.0 21.917208950580402 2.6932238282113783 24.984678277308802 0.9962770566394186 1.0878409408262002 0.2995208981377886 0.07320346598199984 590.6334776688764 325491.9090886399 0.02387253746102274 0.02250729856234779 493.42804310726706 -2.6932238282113783 0.09156388418678163 ARHDS(ph)PDLAPNVTYSLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ARHDSPDLAPNVTYSLPR 18 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR 158.94 2.6824000000000006e-11 2688150000.0 299487.0 436840.0 408432.0 406912.0 407312.0 447406.0 425842.0 334930.0 469780.0 478327.0 True False 297874.5952681336 451379.9553246432 465935.6754454154 458427.0174783722 459180.7688726329 416477.87630043906 405242.39558558364 359924.17734007933 354009.0137294887 447799.761343652 0.6651959669972618 1.0079950779121645 1.0405000530758335 1.0237321612294576 1.0254153943602637 0.9300538147916168 0.9049634023243509 0.8037614318062691 0.7905520375161923 1.0 18.772494233738485 2.121175219857166 2.7701552865152457 0.8452208314211903 0.9639384456044747 0.08037704030658699 0.11589278621544466 0.48786843362524607 7.450838474407587 0.05210767443858736 0.03384301853929682 132.18288298683984 -2.121175219857166 0.11871761418328441 ARHDT(ph)PDPS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARHDTPDPSPLR 12 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 ARHDT(1)PDPS(1)PLR 97.904 0.010677 454720000.0 250840.0 275880.0 195390.0 274450.0 233630.0 246390.0 204990.0 219770.0 314710.0 290590.0 True False 249489.50531094414 285062.49902701814 222899.2136396747 309195.3418600078 263381.3956664994 229357.6392396731 195073.85056215405 236170.35336944807 237153.93739794687 272044.29741338454 0.9170914725399765 1.0478532420543696 0.8193489654406118 1.1365624819187825 0.9681562825273214 0.8430893108968684 0.7170664940119287 0.8681319756193078 0.8717475045528337 1.0 18.053482061409625 2.7533031813057334 6.051227548693888 0.8411592145787279 0.9822903513355815 0.24527164387227707 0.10064312539862526 0.196841406495584 30.134063894020283 0.030154430992702496 0.030820551236101598 566.6347191224343 -2.7533031813057334 0.14113113675685363 ARIPS(ph)GK ddPTM_BT-474_Trastuzumab_2h_R1 2 ARIPSGK 7 1 Q9NTM9;A0A0B4J226 Q9NTM9 CUTC Copper homeostasis protein cutC homolog 1 ARIPS(1)GK;ARIPS(1)GK 68.657 0.037461 1037320000.0 519410.0 557910.0 394580.0 342034.0 369564.0 503340.0 533580.0 555390.0 924920.0 612360.0 True False 516613.55427187623 576479.6970862836 450133.4342491576 385335.4693304637 416625.7848225579 468545.2905349126 507768.6969264565 596836.0220132752 696985.8592930279 573278.660532227 0.9011560866268014 1.0055837357544144 0.7851913305673328 0.6721608457791216 0.7267421823023484 0.8173080960312026 0.8857275386023411 1.0410923397343583 1.2157889474657093 1.0 19.12887705223958 1.7371663443672398 2.4889851157148457 1.11333268193078 0.8161654542305754 0.5976494408569907 0.09881276870868819 0.1869927235688232 2.4126991927248524 0.06810097953005602 0.03012577942325456 54.59669384297168 -1.7371663443672398 -0.29716722770020465 ARLEIEPEWAYGK ddPTM_BT-474_Trastuzumab_2h_R1 4 ARLEIEPEWAYGK 13 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ;;; 167.32 2.9283e-05 3202040000.0 4081220.0 4861790.0 3853400.0 3479420.0 3831980.0 4594230.0 4728180.0 4539780.0 6893000.0 5283110.0 False True 4059247.16498617 5023611.741135887 4395925.225646772 3919914.21524703 4319959.939075082 4276641.693754139 4499459.869998374 4878561.436135745 5194312.51146785 4945937.3967019655 0.8207235230459942 1.0157046760207107 0.8887951611716819 0.7925523315076521 0.8734360329663097 0.8646776840737767 0.909728431459462 0.9863775144806426 1.0502180061825095 1.0 22.237812548227275 1.7050333088075882 2.4377385615645166 1.024845557691062 0.8793547672204469 0.5461129956558127 0.05609565937992022 0.20472986392091674 2.624462453674989 0.037669212014484865 0.01603139117280432 50.70295941097005 -1.7050333088075882 -0.14549079047061508 ARLS(ph)YSDK ddPTM_BT-474_Trastuzumab_2h_R1 5 ARLSYSDK 8 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 ARLS(0.988)YS(0.012)DK;ARLS(0.723)YS(0.277)DK;ARLS(0.999)YS(0.001)DK;ARLS(0.972)YS(0.028)DK;ARLS(1)YSDK 152.64 0.00027487 5990110000.0 3722750.0 2573080.0 2454210.0 2287840.0 2181160.0 2905210.0 2825530.0 2718540.0 4008640.0 3062190.0 True False 3702707.127636412 2658723.412340296 2799741.4356242693 2577480.309422478 2458917.797251815 2704379.6708287285 2688848.3193272045 2921411.259266411 3020764.3850240065 2866758.412527241 1.2916006844023618 0.9274319735915424 0.9766227329759917 0.8990922632892024 0.857734571042599 0.9433580656852892 0.937940325762157 1.0190643363948446 1.053721294345483 1.0 21.450988900224747 4.741442286156346 24.922123575744482 0.9551845742889771 1.2916008115875963 0.7696399239052409 0.05487113886941665 129.56094648027005 1120447.9346057088 0.014222691597950145 0.09922126977538027 55136.89255251699 -4.741442286156346 0.33641623729861925 ARLS(ph)YSDKNLIDSMDQSAFAGFSFVNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ARLSYSDKNLIDSMDQSAFAGFSFVNPK 28 2 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 ARLS(0.5)YS(0.5)DKNLIDSMDQSAFAGFSFVNPK 240.26 1.5107e-45 904370000.0 362120.0 311940.0 302730.0 315110.0 316240.0 371820.0 385320.0 370460.0 654690.0 445460.0 True False 360170.3861553139 322322.7343282879 345351.7526236692 355002.89369104366 356511.2894986671 346116.9585701337 366680.5995346571 398105.60635776346 493350.4218965449 417030.3614225061 0.8636550704048485 0.7728999232306085 0.8281213661414519 0.8512639043356833 0.8548808971188424 0.8299562587949613 0.8792659562816862 0.9546201983946934 1.1830084030661658 1.0 18.66979289570665 1.5495403020589373 2.6972859282635757 1.089978760026901 0.8362533619622533 0.7933705262546211 0.05091023729424092 0.09247437841568744 1.4733422489189112 0.034397336508264216 0.012670241921207021 35.443802022042185 -1.5495403020589373 -0.2537253980646478 ARLSYS(ph)DKNLIDSMDQSAFAGFSFVNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ARLSYSDKNLIDSMDQSAFAGFSFVNPK 28 2 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 ARLS(0.381)YS(0.619)DKNLIDSMDQSAFAGFSFVNPK 236.73 1.9819e-45 747530000.0 872390.0 691860.0 696570.0 778870.0 671260.0 848270.0 786350.0 800780.0 1505300.0 1056400.0 True False 867693.1491716405 714888.1418617979 794641.0013050222 877474.8621406603 756740.9821302663 789631.0915127943 748311.2463512862 860538.2698784472 1134338.9849865877 988979.6475704572 0.877361987481976 0.7228542504570273 0.8034958082880165 0.8872526995841408 0.7651734633662967 0.7984300722998843 0.7566497937440869 0.8701273802675908 1.1469790988856268 1.0 19.91558130618834 1.383257838526607 4.608721743366066 1.0696805441128823 0.8017395492594449 0.7694344477514238 0.058511991402520454 0.08817439543235997 2.8560030938813057 0.039651084464736135 0.013919835481995485 24.168953075997074 -1.383257838526607 -0.26794099485343736 ARNDEYENLFNMIVEIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARNDEYENLFNMIVEIPR 18 1 Q9H2U2-2;Q9H2U2;Q9H2U2-3;D6RGV9;D6RGI1;D6RAD3 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ; 104.61 0.00045764 164071000.0 212664.0 130551.0 122820.0 137584.0 150910.0 217887.0 212800.0 151651.0 186128.0 182909.0 False True 211519.04065319177 134896.31111525398 140111.98842942243 155002.12029319452 170127.49398635168 202824.98454082833 202506.05102505692 162967.96768817445 140259.24838742006 171235.59102372683 1.2352516167265903 0.7877819693253046 0.8182410420156646 0.9051980336945082 0.9935288158802126 1.184479133854389 1.1826165916465181 0.9517178450687463 0.8191010265382586 1.0 17.385623069031414 3.091500736621367 5.056865220565386 1.0365717939286123 0.9185799023656224 0.06775215494365094 0.15063254010577568 0.4836575605437425 20.692900347141407 0.045502700506618934 0.05475181982612318 1234.5274090920595 -3.091500736621367 -0.11799189156298995 ARPAEVGGMQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARPAEVGGMQLR 12 1 P33316-2;H0YNJ9;H0YNW5;P33316;H0YKC5;H0YMM5;H0YKI0 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 0 ; 89.46 0.008582600000000001 980750000.0 1564870.0 1554410.0 1140710.0 1308760.0 1156470.0 1485900.0 1624650.0 1203250.0 1951710.0 1435330.0 False True 1556444.9137934004 1606147.5971893107 1301312.0527709373 1474448.881809813 1303739.5995652806 1383183.2304323628 1546059.4727342988 1293042.624979696 1470737.2220741205 1343726.0105521616 1.1583052657839292 1.195293969586341 0.968435560934185 1.0972838735211614 0.9702421396379386 1.0293640366937509 1.1505764274809227 0.962281458292499 1.0945216588237119 1.0 20.357807567921068 4.250781524655173 24.999981230194503 1.03488579241805 1.1767996934536378 0.47074018876241663 0.06052414116566118 178.34720499328276 364833.0370926302 0.01370935006832369 0.03696722607937064 17814.82352914619 -4.250781524655173 0.14191390103558787 ARPAPS(ph)RDPSPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARPAPSRDPSPPR 13 2 Q5C9Z4 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 1 ARPAPS(0.972)RDPS(0.028)PPR 67.646 0.041412 336110000.0 130660.0 158670.0 168990.0 173700.0 177330.0 162530.0 150490.0 138600.0 167320.0 163610.0 True False 129956.5410776906 163951.23503195943 192782.3231125883 195690.40219013795 199911.92438274334 151294.6836544669 143210.22377237232 148943.0357965393 126086.22797313223 153168.26972643164 0.8484560236255285 1.0703994719323189 1.2586309387506296 1.27761711051286 1.305178446814075 0.9877677924069321 0.9349862346043014 0.9724144306295366 0.8231876497549416 1.0 17.22475793456144 2.553909875461541 6.907392594525465 0.9380288610817814 1.1601550030431103 0.39673447298093 0.12962016100795895 0.2772561898841029 21.280311334059775 0.0451126387637817 0.042312862591961854 358.0221328481999 -2.553909875461541 0.22212614196132885 ARPAPSRDPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ARPAPSRDPSPPR 13 2 Q5C9Z4 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 1 ARPAPS(0.005)RDPS(0.995)PPR;ARPAPS(0.007)RDPS(0.993)PPR;ARPAPS(0.005)RDPS(0.995)PPR 80.609 0.013642 722700000.0 103014.0 128863.0 122881.7 129785.0 117314.0 124866.0 124786.0 121561.0 140296.0 127066.0 True False 102459.38406993137 133152.1270556716 140182.37525311654 146215.76769284424 132253.24252544483 116234.30732294748 118749.62445118789 130632.4990942507 105721.9306700847 118956.53909332425 0.8613177959855535 1.119334238122131 1.1784335381776712 1.2291528385685 1.1117778268724599 0.9771157450349064 0.9982605862299505 1.0981531582031516 0.8887441705675659 1.0 16.86007505396121 2.7498565242135706 23.234323731754493 1.0071997097666276 1.1126094264508386 0.20561374078861405 0.10220059425861971 486.4739776196555 1000616.3035665089 0.03224641681050107 0.033880672668249304 562.1555778659426 -2.7498565242135706 0.10540971668421095 ARPATDS(ph)FDDYPPR ddPTM_BT-474_Trastuzumab_2h_R1 8 ARPATDSFDDYPPR 14 1 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 ARPAT(0.033)DS(0.967)FDDYPPR;ARPAT(0.065)DS(0.935)FDDYPPR;ARPAT(0.001)DS(0.999)FDDYPPR;ARPAT(0.005)DS(0.995)FDDYPPR;ARPATDS(1)FDDYPPR;ARPAT(0.027)DS(0.973)FDDYPPR;ARPAT(0.006)DS(0.994)FDDYPPR;ARPAT(0.057)DS(0.943)FDDYPPR 173.37 1.6413e-06 2693710000.0 3206560.0 3201830.0 2607930.0 3532450.0 2752434.0 3069120.0 2754190.0 2788330.0 4454300.0 3817620.0 True False 3189296.2372423057 3308400.976002896 2975103.875466076 3979657.8078097412 3102940.154945535 2856958.9583313693 2620959.30767247 2996409.3434528504 3356597.4495620513 3573976.223171077 0.8923663835716688 0.9256919378908054 0.8324352736813564 1.1135098722841295 0.8682039166428459 0.7993782778432922 0.7333454796593399 0.8383965522843434 0.9391773307836524 1.0 21.769098605822414 3.0159494867262935 24.98251734551417 0.8397241992611909 0.9394907041305971 0.11546876307223619 0.0962703948728664 392.20066357458114 614320.2200840298 0.02739037865979931 0.03272837978904262 1037.407746752951 -3.0159494867262935 0.09976650486940619 ARPATDSFDDYPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ARPATDSFDDYPPR 14 1 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;; 141.85 8.7195e-06 1401770000.0 864548.0 1095590.0 1008170.0 1065710.0 1008310.0 1030030.0 1023360.0 978360.0 1187060.0 1053770.0 False True 859893.3696283118 1132056.0508518596 1150111.572829269 1200628.7767302915 1136712.3017784017 958826.4505298124 973856.1671851621 1051370.1912114152 894524.968789065 986517.4964221135 0.8716453309211036 1.1475275957675186 1.1658298783351295 1.2170374890305682 1.1522474825849642 0.9719305070688249 0.987165631341693 1.065739021380268 0.9067502320367499 1.0 19.911985112590486 2.736974720864023 24.828276242802648 0.9966584517062341 1.121847684594973 0.2977957479397475 0.0942065411244894 170.6611022279492 2671799.85832889 0.03026698719823184 0.02992321455033692 545.7260948905918 -2.736974720864023 0.12518923288873884 ARPDAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ARPDAEK 7 1 O15144;H7C3F9 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;; 116.73 0.0049167 1311160000.0 1932360.0 1657390.0 1605270.0 1335850.0 1419730.0 1201180.0 1722820.0 1513980.0 2397620.0 1754920.0 False True 1921956.3884653777 1712555.2242365882 1831278.0627430293 1504968.473032213 1600524.2001010103 1118145.2538735752 1639480.6147884817 1626960.875434666 1806758.6774619948 1642919.5031373985 1.1698420919558852 1.0423853517876012 1.1146486843974597 0.9160329950178645 0.9741951428810552 0.6805843206184545 0.9979068430666568 0.9902864214148914 1.0997244076850516 1.0 20.64783036472509 3.7426498448561722 24.49213195230367 0.9462902356315678 1.1023013870561822 0.3175009645619883 0.10565258110054676 333.99109425947506 2000402.6557892233 0.02828425203549625 0.04868162369515658 5529.041438486311 -3.7426498448561722 0.1560111514246144 ARPDAEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 ARPDAEKK 8 2 O15144;H7C3F9 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;;; 93.649 0.006141300000000001 1246570000.0 1189620.0 1087390.0 969770.0 914660.0 916820.0 858823.0 1213270.0 1099170.0 2077330.0 1276040.0 False True 1183215.2180992062 1123583.1188088635 1106305.186608053 1030455.8622177964 1033571.5925821166 799454.5874618854 1154579.494958509 1181195.6468721656 1565399.8562958813 1194602.0347271934 0.9904681087952545 0.9405501465309757 0.926086809203113 0.8625934263146618 0.8652016006469881 0.6692225228332661 0.9664971776330314 0.9887775280258171 1.310394433283688 1.0 20.1880986535145 1.5396970472448808 3.007982740605113 1.154514265269289 0.8816593342960751 0.4684382652077821 0.1105916256471369 0.18177334688123992 3.604912702972642 0.0765966876717424 0.028851720635292153 34.649506001142946 -1.5396970472448808 -0.2728549309732139 ARPEDVISEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARPEDVISEGR 11 1 P25325-2;P25325 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase 0 ; 167.3 1.7699e-05 2628000000.0 912920.0 1098730.0 1006150.0 1095590.0 1083040.0 1116990.0 1093500.0 991510.0 1147720.0 1082320.0 False True 908004.9401549476 1135300.56385369 1147807.1743874243 1234291.5816666267 1220958.724318989 1039775.1104116347 1040603.2274243403 1065501.510985762 864879.784660072 1013245.4109792288 0.8961352603387822 1.120459615757355 1.1328027365829876 1.2181565969035801 1.2049980301800927 1.0261828962114585 1.0270001878603843 1.0515729944989651 0.8535738482390242 1.0 19.950552210711887 2.5533416624231267 6.755184812218638 0.9992137563385327 1.1216450972394694 0.29175263866211354 0.09591098249415536 0.3512177576489331 26.236217998112494 0.03224145892996857 0.030223218471864655 357.55401771242435 -2.5533416624231267 0.12243134090093666 ARPEYMLPVHFYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARPEYMLPVHFYGR 14 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 130.98 3.5392e-05 4305300000.0 2564200.0 3931700.0 3495400.0 3371100.0 3153100.0 2759000.0 3009900.0 2646300.0 3633100.0 2483800.0 False True 2550394.6321094045 4062564.2577371616 3987521.937438558 3797880.9143533325 3554628.5951120895 2568276.8239874076 2864299.6380654066 2843780.3436391223 2737771.18604582 2325281.757511835 1.0968110096208088 1.7471277382248522 1.7148553823883266 1.6332992344193378 1.528687258491941 1.1045013429837376 1.2318075557133115 1.222983122132307 1.1773933103811767 1.0 21.148974109431546 2.790021352446347 5.822736810602593 1.173107147220609 1.5728693079466916 0.5451659050992768 0.17965335824262055 0.16352304268134465 13.026425292987545 0.05437737544138875 0.0572490463076938 616.6253180084816 -2.790021352446347 0.3997621607260826 ARPFPDGLAEDIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ARPFPDGLAEDIDK 14 1 P13639;M0R0I6 P13639 EEF2 Elongation factor 2 0 ; 117.4 0.00027873 550950000.0 758810.0 608960.0 541030.0 464350.0 487570.0 702310.0 613000.0 650960.0 845600.0 651690.0 False True 754724.6512717173 629228.8654759062 617202.3212829373 523136.66238912183 549659.1494461969 653760.9627599121 583346.8481125934 699537.9407079018 637213.2104594831 610098.5862601205 1.2370535980064281 1.0313560458040945 1.0116435854512669 0.8574625055205066 0.9009349666184036 1.0715661001075911 0.9561517781715998 1.1465981998024957 1.0444430208658146 1.0 19.21868286205732 -0.3087444001095853 8.037191559097822 1.0000000030691651 1.0262587696013257 0.006167034168342744 0.10519138262075506 0.0 0.0 0.10482863452480294 0.02470834611167147 0.4911968803552275 0.3087444001095853 0.026258766532160527 ARPFPDGLAEDIDKGEVSAR ddPTM_BT-474_Trastuzumab_2h_R1 7 ARPFPDGLAEDIDKGEVSAR 20 2 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;;; 250.28 7.0119e-31 13866830000.0 3658390.0 3772690.0 3315970.0 3210640.0 3299970.0 4142210.0 3980100.0 3696090.0 5334340.0 4265170.0 False True 3638693.6347253374 3898261.706010739 3782829.753072078 3617106.6948056663 3720201.6190453996 3855868.7724135155 3787567.357541488 3971911.0041647274 4019763.38349389 3992963.1990042487 0.911276526573734 0.976282903629784 0.9473740589483587 0.9058702809251254 0.9316894330438934 0.9656659929585824 0.9485605473363787 0.9947276762168078 1.0067118536169641 1.0 21.929028344811606 1.8102285741847355 1.4212092011415776 1.0066523822034088 0.9380782837516274 0.6502514791305904 0.020200279958226954 0.25662607472123516 0.979059806022906 0.015737346970391416 0.006444515969983196 64.59941337271745 -1.8102285741847355 -0.06857409845178142 ARPPS(ph)GSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ARPPSGSSK 9 1 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 ARPPS(0.917)GS(0.065)S(0.019)K;ARPPS(0.991)GS(0.007)S(0.002)K 59.57 0.061417999999999986 288660000.0 280430.0 268530.0 239580.0 244400.0 243050.0 222960.0 308210.0 267350.0 343480.0 327070.0 True False 278920.19603870204 277467.8587201868 273310.78153330926 275341.01494110335 274000.9768297848 207547.29999138584 293300.70482346264 287301.0145757919 258833.95639619586 306196.1125812848 0.9109201083167184 0.906176947777312 0.8926004292779989 0.8992309295501247 0.8948545248334815 0.6778247386674088 0.957885135610927 0.9382908625253141 0.8453208442595239 1.0 18.224096441156604 -0.3488034484651403 0.6364067250217346 1.0102526351491956 0.8805445016266534 0.18342271644234243 0.07386528999371386 15.895492183395145 5.537236358173828 0.4773441207450287 0.028994340636510147 0.4479159746151343 0.3488034484651403 -0.12970813352254218 ARPSAHS(ph)PGKK ddPTM_BT-474_Trastuzumab_2h_R1 3 ARPSAHSPGKK 11 2 H9KVB4;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 ARPS(0.095)AHS(0.905)PGKK;ARPS(0.2)AHS(0.8)PGKK;ARPS(0.004)AHS(0.996)PGKK 71.031 0.026164 400007000.0 377389.0 338296.0 314280.0 324506.0 336869.0 430343.0 401813.0 404582.0 540867.0 441205.0 True False 375357.1795558592 349555.9778557499 358527.89222927013 365588.4263276501 379767.2703710046 400594.40132845734 382375.7701152786 434773.96326576895 407577.57509648637 413046.91916539543 0.908751916887088 0.8462863699893086 0.8680076659419547 0.8851014481995406 0.9194288899148895 0.9698520500719393 0.9257441524752416 1.0526018790898508 0.9867585404584049 1.0 18.655946145191802 2.5942615748284568 0.9196331958441116 1.0140570617022473 0.869330327117875 0.7587966773687045 0.030194433395738296 0.24892262190352815 0.43567845520092147 0.018792157083802663 0.01500912645094687 392.88149600984775 -2.5942615748284568 -0.14472673458437235 ARPSETGSDDDWEYLLNSDYHQNVESHLLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARPSETGSDDDWEYLLNSDYHQNVESHLLNR 31 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 0 191.51 5.6965e-19 141390000.0 74606.0 97332.0 87051.0 89026.0 95447.0 90928.0 97149.0 79854.0 105130.0 89164.0 False True 74204.32958550577 100571.63678156359 99307.02413914396 100296.6824719586 107601.60969130823 84642.36138148863 92449.53172478035 85813.11097039586 79222.1201698266 83473.47718285909 0.8889569727992989 1.2048334414205466 1.1896835676510698 1.2015395291638107 1.289051484648153 1.0140030610689543 1.107531815432321 1.0280284692395347 0.9490693672228442 1.0 16.349030248810863 1.9158678138647873 1.274911297148932 0.9795061714844547 1.1533577385572504 0.26792831541601614 0.10597666304357935 0.5741114314882014 1.7278948469991853 0.0798512268114789 0.03498711895448448 82.38873104102332 -1.9158678138647873 0.1738515670727957 ARPTILSSGLPEEPDQNLS(ph)SPEEVFHSGHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARPTILSSGLPEEPDQNLSSPEEVFHSGHSR 31 1 Q5T9C2-3;Q5T9C2;Q5T9C2-2 Q5T9C2-3 FAM102A Protein FAM102A 1 ARPTILSSGLPEEPDQNLS(0.5)S(0.5)PEEVFHSGHSR 215.7 5.270699999999998e-35 179450000.0 42076.0 68003.0 55310.0 64046.0 63184.0 65865.0 55316.0 24164.0 65698.0 52091.0 True False 41849.46749108309 70266.43874631842 63097.167236861744 72154.21703321568 71230.10787909117 61311.90757953269 52640.15375235925 25967.240382305758 49507.608208097256 48766.507782651155 0.8581600240395145 1.440874935303773 1.2938627370670321 1.4795854842590304 1.4606358158053614 1.2572544224982336 1.079432506977384 0.5324810318188027 1.0151969140121564 1.0 15.573603042818412 2.040517417683949 3.811098382827369 0.7969259379186554 1.317883513523459 0.4703371271732636 0.2101002771276641 0.16029465826841416 4.911598527646127 0.08762465817869941 0.057855503834732064 109.77853168387897 -2.040517417683949 0.5209575756048036 ARQEELYSELQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ARQEELYSELQAR 13 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 262.37 3.771e-24 2059000000.0 655410.0 865400.0 692660.0 734650.0 772690.0 759650.0 808090.0 669690.0 877680.0 822420.0 False True 651881.3453828964 894204.3158546531 790180.5072913507 827656.6146746387 871087.491407555 707137.1835237538 768999.5994964199 719665.6684169151 661387.5243094589 769932.4514908142 0.8466734245590812 1.1614061910537896 1.0262984834076423 1.0749730227269336 1.131381707214542 0.9184405491085997 0.9987883976151569 0.9347127361931973 0.8590201946012529 1.0 19.554372353784647 2.7208576691021964 24.903837532698834 0.9426583316461438 1.054715346736886 0.26857183003930873 0.08708824791743318 982.0646884751404 1381529.0327730882 0.026638987057289846 0.02516224922224781 525.8449035218376 -2.7208576691021964 0.11205701509074217 ARQEFEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ARQEFEER 8 1 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 98.009 0.0071379999999999985 216470000.0 158280.0 220780.0 200630.0 174770.0 163440.0 194230.0 210740.0 153180.0 260520.0 220770.0 False True 157427.8380665612 228128.52883567158 228876.9600927784 196895.86408042838 184253.11521522308 180803.33726824026 200545.70109502092 164611.06943227942 196318.33678914912 206680.26958929375 0.7616974681685635 1.1037750690426276 1.107396272259529 0.9526592183747944 0.8914886533744273 0.8747972780736398 0.9703185577101134 0.7964527516796235 0.9498649154041873 1.0 17.6570411451338 3.469864208698188 6.627905917450314 0.9001792823073138 1.0068458445841426 0.08564285743535105 0.10414278102977105 0.24057510158563322 51.44803465057048 0.02793285585995548 0.03946522544230893 2950.2866132904273 -3.469864208698188 0.1066665622768288 ARQPQS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARQPQSPPR 9 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 ARQPQS(1)PPR 107.09 0.0017137 75251000.0 40578.0 56754.0 44349.0 51005.0 46090.0 38321.0 50241.0 42423.0 50737.0 45749.0 True False 40359.532556639635 58643.02258148254 50592.953711581635 57462.2277703395 51959.28830316719 35671.95946793099 47810.65089074193 45588.81967962906 38233.54619096824 42829.25965231055 0.9423355174541832 1.369228024428829 1.1812707976345382 1.3416582083561541 1.2131726937372844 0.8328876043507925 1.116308133245134 1.0644316537273983 0.8926968736174644 1.0 15.386309118530177 2.8542991954418473 9.124201399452957 1.003209012492158 1.2253060913342162 0.4213119678227588 0.13193457871475137 0.3353689340869618 24.46173890935455 0.03852463435318319 0.04088914291931812 714.9887285966743 -2.8542991954418473 0.2220970788420582 ARS(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 ARS(0.997)MDS(0.003)SDLSDGAVTLQEYLELKK 133.75 2.0793e-05 138430000.0 202870.0 197150.0 200610.0 163880.0 152970.0 270000.0 275760.0 240200.0 446650.0 320570.0 True False 201777.77046097614 203712.01857030808 228854.14426662144 184627.19119700507 172449.82277577533 251335.53551163475 262420.4352945003 258124.94371088594 336579.0923033674 300110.94814621506 0.6723439171658254 0.678789027286865 0.7625651302635016 0.615196454302807 0.5746202324207019 0.8374753972293715 0.8744114032342739 0.8600983912960303 1.1215155407772226 1.0 18.195136424323188 1.950198237057213 1.0320585947143195 1.0360113847341808 0.668178765717931 0.7822449875735884 0.07685621861309466 0.24775473245509944 0.4850037040037084 0.06389107531302014 0.029037736444385474 89.16578493424984 -1.950198237057213 -0.36783261901624975 ARS(ph)PDLGPQEQMNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ARSPDLGPQEQMNPK 15 1 H3BUW4;H3BMU4;A0A0C4DGM2;C9K0J8;Q8IWY8-4;Q8IWY8-3;Q8IWY8-2;Q8IWY8 H3BUW4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 1 ARS(1)PDLGPQEQMNPK 149.82 2.9145e-07 0.0 289530.0 268380.0 238470.0 239240.0 253170.0 316890.0 321240.0 255380.0 353110.0 302130.0 True False 287971.20264980703 277312.86606086435 272044.5031816022 269527.75947017 285409.69884384517 294984.14017882216 305700.39394402865 274437.7523933638 266090.77193158434 282847.80473349296 1.0181136209317285 0.9804313889660774 0.9618052487199966 0.9529073761916821 1.0090575004206452 1.0429076529576193 1.0807946493771379 0.9702665101182124 0.9407560089861841 1.0 18.109666448273746 4.76892436219357 21.217905165955628 0.9950092710072423 1.018113860064009 0.03102938785510856 0.04064339877372745 7069.933856381475 4939758.121940741 0.010533934762250898 0.8605721814610799 58738.70428334192 -4.76892436219357 0.0231045890567666 ARS(ph)PGREEVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARSPGREEVAR 11 2 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 ARS(1)PGREEVAR 83.69200000000002 0.013009 1418600000.0 613240.0 734530.0 672100.0 784270.0 655350.0 706170.0 750250.0 660930.0 734560.0 739030.0 True False 609938.3839773694 758978.3870172391 766725.8380020743 883558.5015869843 738804.9379362253 657354.130045375 713957.5412666766 710251.9527345372 553537.5305997131 691864.4726845854 0.8815865072687938 1.0970044235285519 1.1082023550465172 1.2770687561952476 1.0678463298881364 0.9501197936854558 1.0319326536545017 1.0265767079766424 0.8000664182854577 1.0 19.400129934647115 2.852204776349259 5.207491365831302 0.9749168044508336 1.1012387785310505 0.2429051181613846 0.10829929433609263 0.3510131683876826 13.800228963141958 0.03415855470183314 0.03636682185812576 711.5489405445007 -2.852204776349259 0.12632197408021684 ARS(ph)PINR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARSPINR 7 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 ARS(1)PINR 88.49600000000002 0.011243 46435000.0 9373.6 14899.0 14877.0 15306.0 17376.0 13756.0 14259.0 11226.0 11601.0 15740.0 True False 9323.13357910486 15394.904208364314 16971.5522867979 17243.73803064047 19588.730604379103 12805.080098140925 13569.237695330296 12063.74112447295 8742.088995435735 14735.459724308028 0.632700557263589 1.044752216516764 1.1517490871900762 1.1702205668001464 1.329359990856952 0.8689976653403834 0.9208560811269498 0.8186878014109233 0.5932688330730896 1.0 13.847004450641371 2.507840042239685 24.058600933298102 0.8309648863104753 1.077571392855842 0.2561188809003342 0.19229516209898764 576.7275792161528 451685.7522934848 0.06367250170496035 0.059949706562321445 321.98826374222665 -2.507840042239685 0.24660650654536664 ARS(ph)PSVAAMASPQLCR ddPTM_BT-474_Trastuzumab_2h_R1 14 ARSPSVAAMASPQLCR 16 1 P25325-2 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase 1 ARS(0.998)PS(0.002)VAAMASPQLCR;ARS(0.973)PS(0.027)VAAMASPQLCR;ARS(0.999)PS(0.001)VAAMASPQLCR;ARS(1)PSVAAMASPQLCR;ARS(0.846)PS(0.149)VAAMAS(0.005)PQLCR;ARS(0.999)PS(0.001)VAAMASPQLCR;ARS(0.998)PS(0.002)VAAMASPQLCR;ARS(0.985)PS(0.015)VAAMASPQLCR;ARS(0.995)PS(0.005)VAAMASPQLCR;ARS(0.926)PS(0.074)VAAMASPQLCR;ARS(0.987)PS(0.013)VAAMASPQLCR;ARS(0.99)PS(0.01)VAAMASPQLCR;ARS(0.996)PS(0.004)VAAMASPQLCR;ARS(0.995)PS(0.005)VAAMASPQLCR 224.8 4.5174e-15 21234690000.0 3901460.0 4498520.0 4264510.0 4327990.0 3570440.0 4228990.0 4349260.0 3798710.0 5448240.0 4345810.0 True False 3880454.9728529593 4648250.518787236 4864915.940214589 4875913.090241186 4025114.3703441117 3936649.875271665 4138869.678013344 4082189.029658526 4105594.2546756933 4068456.685164871 0.9537904107477814 1.1425095259675522 1.1957644671390775 1.1984674945712477 0.9893467429605919 0.967602749619082 1.0173070523535928 1.0033753203134075 1.0091281712906617 1.0 21.956050200447507 3.2212412074153036 24.938987327386616 0.9982855024484937 1.129276405055698 0.4716075146740081 0.06458180465016353 200.5583383261327 288792.14664862555 0.01916674439746649 0.022958545852104717 1664.3367673560413 -3.2212412074153036 0.13099090260720436 ARS(ph)PTDDK ddPTM_BT-474_Trastuzumab_2h_R1 4 ARSPTDDK 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 ARS(0.999)PT(0.001)DDK;ARS(0.993)PT(0.007)DDK;ARS(0.999)PT(0.001)DDK;ARS(0.967)PT(0.033)DDK 89.301 0.0084803 3137920000.0 3537430.0 2485380.0 2144430.0 1945540.0 1970230.0 1752220.0 2514220.0 2723030.0 3989240.0 3040790.0 True False 3518384.869925422 2568104.3708560653 2446347.1042802986 2191845.1645192886 2221127.1120318742 1631093.1556822108 2392597.573346891 2926236.325866164 3006145.2550773206 2846724.1788487015 1.2359416117891546 0.9021261666083441 0.8593551572213339 0.769953471714894 0.7802396623230857 0.5729719682016656 0.8404739704408339 1.0279311032688878 1.0560015885673524 1.0 21.44087128541658 1.7234769206362515 5.243374469038679 1.032294522868478 0.8368954391446661 0.20785347778368868 0.15588396047932282 0.2458677071341793 16.50739820513377 0.08501571099898074 0.043030013404326134 52.90258828638567 -1.7234769206362515 -0.19539908372381176 ARS(ph)PTDDKVK ddPTM_BT-474_Trastuzumab_2h_R1 9 ARSPTDDKVK 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 ARS(0.83)PT(0.17)DDKVK;ARS(0.998)PT(0.002)DDKVK;ARS(0.992)PT(0.008)DDKVK;ARS(0.966)PT(0.034)DDKVK;ARS(0.998)PT(0.002)DDKVK;ARS(0.942)PT(0.058)DDKVK;ARS(0.972)PT(0.028)DDKVK;ARS(0.975)PT(0.025)DDKVK;ARS(0.626)PT(0.374)DDKVK 127.71 0.00018198 24600126000.0 19981248.0 15226254.0 13774531.0 12807068.0 12207959.0 17366160.0 18559690.0 17543034.0 30325683.0 17721500.0 True False 19873671.180893328 15733050.659925107 15713865.23443022 14428441.495661736 13762570.216408001 16165678.234743472 17661886.889799055 18852184.27880166 22852324.767983124 16590498.697860548 1.197894743420592 0.9483169220195885 0.9471605116039474 0.8696809998558016 0.8295452998156574 0.9743937496482936 1.0645784199408466 1.1363241468583927 1.3774344692200289 1.0 23.98385391748041 1.907556880033843 2.1003992211464415 1.1953052506104755 0.9502416112572186 0.35980588072531416 0.12513784876728007 0.31444308603230275 2.561101409494437 0.07483651424002308 0.036407476646975426 80.82707823085487 -1.907556880033843 -0.24506363935325692 ARS(ph)PVLWGWSLPS ddPTM_BT-474_Trastuzumab_2h_R1 2 ARSPVLWGWSLPS 13 1 A1IGU5 A1IGU5 ARHGEF37 Rho guanine nucleotide exchange factor 37 1 ARS(1)PVLWGWSLPS;ARS(1)PVLWGWSLPS 80.74600000000002 0.04459 501620000.0 634510.0 728600.0 652580.0 725090.0 638370.0 773910.0 741500.0 626580.0 797620.0 707720.0 True False 631093.8686606878 752851.0105519986 744457.5916729567 816886.3196548482 719662.6355845691 720411.4232881835 705630.8121949234 673338.5813087716 601057.238560421 662552.7036904247 0.9525187432569351 1.1362884889890443 1.1236201852717844 1.2329378706098155 1.086196813590891 1.0873269692742709 1.065018387615888 1.0162792749290275 0.9071840401714862 1.0 19.337675694778973 1.731851497303726 1.6433633270404857 0.9547790015638706 1.111366650917023 0.421033970957309 0.06875261161557965 0.32865464630355773 1.747842746363313 0.052206260861473196 0.02054792823664684 53.9326173738781 -1.731851497303726 0.1565876493531524 ARS(ph)PYSPAEEDALFMDLPTGPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ARSPYSPAEEDALFMDLPTGPR 22 1 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 1 ARS(1)PYSPAEEDALFMDLPTGPR;ARS(0.994)PY(0.001)S(0.005)PAEEDALFMDLPTGPR;ARS(0.995)PYS(0.005)PAEEDALFMDLPTGPR;ARS(0.996)PYS(0.004)PAEEDALFMDLPTGPR 216.71 8.0022e-26 318825000.0 184654.0 212347.0 184999.0 207555.0 185859.0 201398.0 207773.0 186207.0 221085.0 201685.0 True False 183659.84338098785 219414.841528528 211045.25115986587 233831.4417189065 209527.04197739938 187475.83029989715 197722.22622006177 200102.71187998695 166601.5641372215 188813.29062878445 0.9727061202596775 1.1620730765182605 1.1177457394924093 1.2384268127535036 1.1097049433312356 0.9929164926662032 1.0471838373326838 1.0597914543706461 0.8823614247832149 1.0 17.52660079448285 2.8026962931209587 5.305792783567447 1.009295676437946 1.1302524296408902 0.3889249750887189 0.07638065472149995 0.23871152294647338 13.523799010335264 0.023577474656183615 0.024884695058348845 634.8867932990312 -2.8026962931209587 0.1209567532029443 ARS(ph)RT(ph)PPSAPSQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARSRTPPSAPSQSR 14 2 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ARS(0.753)RT(0.84)PPS(0.408)APSQSR;ARS(0.943)RT(0.943)PPS(0.114)APSQSR 93.753 0.008386399999999999 253590000.0 111773.0 142851.0 119077.0 154854.0 149415.0 150212.0 164812.0 144449.0 199932.0 175134.0 True False 111171.22658714768 147605.709179747 135842.00656416183 174458.50052246184 168442.11459791116 139828.19800101372 156839.4139170192 155228.51787715967 150661.4375515436 163956.79818023884 0.6780519491783219 0.9002719668719258 0.8285231723958757 1.0640516432303002 1.0273566968094947 0.8528356222673952 0.9565898801256448 0.9467647551065 0.9189093665144672 1.0 17.32295619622015 5.203623497191537 1.1374974957270152 0.9554856935702851 0.21485486001323895 0.6095714037174187 0.0662654083885918 2.790367100280499 1.4577713751435293 0.018983340196074817 3.1792622478148838 159817.1925080045 -5.203623497191537 -0.7406308335570462 ARS(ph)VDALDDLTPPSTAESGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ARSVDALDDLTPPSTAESGSR 21 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 ARS(1)VDALDDLTPPSTAESGSR;ARS(1)VDALDDLTPPSTAESGSR 133.44 5.989e-06 564160000.0 294020.0 329380.0 364620.0 346790.0 361170.0 402600.0 350740.0 305870.0 437090.0 406480.0 True False 292437.0289886928 340343.2141855856 415955.326666146 390693.57844281977 407162.8586776934 374769.20961845963 333773.36624308507 328695.5725763889 329375.02620593074 380538.0983949636 0.7684829199024641 0.8943735610733531 1.0930714386301015 1.0266871571879137 1.069966083277937 0.9848401807839057 0.8771089350865967 0.8637652155270747 0.8655507230292345 1.0 18.537681373931598 2.2410362633052996 24.66250662019311 0.8869458575402338 0.9816528418257356 0.10873901131025132 0.09443715932938598 99.273521032451 988980.1686054767 0.035588825701377134 0.02848996399354411 174.1952319198989 -2.2410362633052996 0.09470698428550184 ARS(ph)VS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ARSVSPPPK 9 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 ARS(1)VS(1)PPPK;ARS(1)VS(1)PPPK 55.31399999999999 0.073576 1607440000.0 893600.0 802740.0 692670.0 689910.0 743040.0 842670.0 880270.0 838240.0 1181770.0 928120.0 True False 888788.9568882935 829458.7156334234 790191.9152044301 777252.5352619335 837661.7396568736 784418.2063318135 837687.9771420441 900793.7252964721 890538.6184066966 868886.5869964918 1.022905601478553 0.9546225342258304 0.9094304446980956 0.8945385357468658 0.9640633797242123 0.9027854936089382 0.9640935763983963 1.0367218677068946 1.0249192837526127 1.0 19.72880835336867 1.8832602764227682 4.369471052316004 1.022586021329416 0.9390239953807052 0.4908622732444574 0.03588131975084762 0.18566237716286732 5.474603950872006 0.01740018166517285 0.009949685070242902 76.42936941414396 -1.8832602764227682 -0.08356202594871076 ARS(ph)VS(ph)PPPKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ARSVSPPPKR 10 2 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR 90.412 0.0058182 10038550000.0 357260.0 468410.0 318235.0 388223.0 369338.0 412010.0 440260.0 381450.0 473470.0 422050.0 True False 355336.5518553177 484000.7436901756 363039.72185179323 437371.9919945992 416371.00506216456 383528.71846721723 418962.9418434751 409915.7359638528 356789.66267295583 395114.4076648156 0.8993257268329169 1.2249635404355192 0.9188217761974602 1.106950249117799 1.0537985884214616 0.9706776341919002 1.0603585536645141 1.0374608670600376 0.9030034231898435 1.0 18.59191092892147 1.262452304739548 23.56588953177291 0.951501806185645 1.038719166120553 0.11422616788237205 0.09120275198611166 192.18072829768266 189561.6171398417 0.05442410711406208 0.019843475319068132 18.300051197284095 -1.262452304739548 0.08721735993490809 ARSDEGQLS(ph)PATR ddPTM_BT-474_Trastuzumab_2h_R1 1 ARSDEGQLSPATR 13 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 ARSDEGQLS(0.994)PAT(0.006)R 74.141 0.021146 427830000.0 79481.0 123630.0 121940.0 131750.0 140660.0 119100.0 107430.0 121010.0 139220.0 143820.0 True False 79053.08312716922 127744.94981408682 139108.0920785197 148429.53649136808 158572.2172428617 110866.8973312434 102233.20047754633 130040.38067632915 104911.0964524234 134641.2844695033 0.587138509845953 0.9487799401009241 1.0331756164286159 1.102407311963723 1.1777384467746876 0.8234242399578052 0.7593005435171891 0.9658284321090514 0.7791896584006974 1.0 17.038761319504175 -0.24363822390755507 8.57435204194017 0.9999999923205596 0.921388765197217 0.021016486650811683 0.16778491978535356 0.0 0.0 0.16497214062321514 0.03888430673688938 0.5706394285381494 0.24363822390755507 -0.07861122712334256 ARSPT(ph)DDKVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ARSPTDDKVK 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 ARS(0.311)PT(0.689)DDKVK 145.0 0.0014874 2741500000.0 1975300.0 1456900.0 1280300.0 1161000.0 1194700.0 1573000.0 1791000.0 1723400.0 2847200.0 1627000.0 True False 1964665.2042764605 1505392.0357853526 1460555.1114329062 1307982.4809599894 1346837.9634583166 1464262.212443709 1704362.4877155856 1852008.859247877 2145545.7105253534 1523163.4670552216 1.28985840769593 0.9883325515256567 0.9588958394968874 0.8587275819375788 0.8842373078066267 0.9613296564121326 1.1189622943167628 1.215896323215014 1.4086115882712198 1.0 20.53863935058114 2.0066596748244283 2.790197808935158 1.2289452500731317 0.978157444050245 0.31469769600190556 0.14374769060644427 0.2938597665414719 4.386638775785621 0.07165305281891145 0.04143786753299073 101.54526442128365 -2.0066596748244283 -0.25078780602288675 ART(ph)PLTAAQQK ddPTM_BT-474_Trastuzumab_2h_R1 5 ARTPLTAAQQK 11 1 I3L2J0 I3L2J0 CIC 1 ART(1)PLTAAQQK;ART(1)PLTAAQQK;ART(1)PLTAAQQK;ART(1)PLTAAQQK;ART(1)PLTAAQQK 164.88 3.838e-05 3783450000.0 3130440.0 2751690.0 2401210.0 2455450.0 2546420.0 2798720.0 2741430.0 2808760.0 3215360.0 3007560.0 True False 3113586.058864581 2843278.3382182713 2739279.4963085293 2766309.718237043 2870691.493186176 2605251.0738782315 2608816.5576204043 3018363.933794285 2422977.6116166054 2815614.9458983405 1.1058280761722448 1.0098249912901724 0.9728885337460602 0.9824886468467134 1.0195611077317472 0.9252867043035989 0.9265530293553844 1.0720087766941642 0.8605500603505066 1.0 21.425018618630904 4.752642152851652 2.111860276899534 0.9755920951077959 1.1450812143706708 0.3566896332318137 0.05484970206756223 0.8086740147333698 3.8938844030390993 0.013473518178066739 0.26423162556205504 56577.29150304293 -4.752642152851652 0.1694891192628749 ARTEKEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ARTEKEEK 8 2 K7ELG9;Q3MHD2;Q3MHD2-2 K7ELG9 LSM12 Protein LSM12 homolog 0 ;; 122.13 0.00078933 201502000.0 212066.0 163655.0 119183.0 125109.0 135600.0 122462.0 203838.0 211912.0 362397.0 257718.0 False True 210924.26021874766 169102.15774346353 135962.9304427931 140947.7865722851 152867.85623583142 113996.49018454007 193977.5772032216 227725.94950733206 273089.1152210087 241270.21659651937 0.8742241922527892 0.7008828529642188 0.5635296903229726 0.5841905750347739 0.6335960500730812 0.47248471772700606 0.8039847600734485 0.9438626645250722 1.1318807562464317 1.0 17.88029030867887 1.7728128221646613 2.3324640703802753 1.0542998977041862 0.6361362953281818 0.7215088311411266 0.10752467135095725 0.1445354409483348 1.565408699637278 0.06918459015154538 0.031025351678090708 59.26698330402689 -1.7728128221646613 -0.41816360237600436 AS(ph)AGTPSLSAGVSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASAGTPSLSAGVSPK 15 0 Q8TEK3;Q8TEK3-1 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific 1 AS(0.356)AGT(0.356)PS(0.27)LS(0.006)AGVS(0.012)PK;AS(0.326)AGT(0.326)PS(0.326)LS(0.001)AGVS(0.022)PK 65.71600000000001 0.03911 681360000.0 642900.0 1034080.0 978350.0 923770.0 950310.0 1006620.0 987090.0 826640.0 631580.0 1175490.0 True False 639438.6978329045 1068498.7276854403 1116093.176029356 1040719.1872837284 1071326.3455713338 937034.7287286 939340.6856500151 888328.0743928661 475935.571738411 1100469.2218123781 0.5810600470768315 0.970948306873785 1.014197538565637 0.9457049471767628 0.9735177725433806 0.8514865387924111 0.8535819694284605 0.8072266418590665 0.43248421882675286 1.0 20.069687365476327 1.5492862981623954 4.142074676093069 0.6906269716167264 0.8957923823733612 0.12042332616733642 0.1720428019888044 0.26957451853623865 10.293965433943404 0.09980475668699924 0.04225374103241635 35.423078222920914 -1.5492862981623954 0.20516541075663486 AS(ph)DKDITVSK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASDKDITVSK 10 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 AS(1)DKDITVSK;AS(1)DKDITVSK;AS(1)DKDITVSK;AS(1)DKDITVSK;AS(0.978)DKDIT(0.022)VSK;AS(1)DKDITVSK 185.27 8.8887e-07 10217760000.0 10469540.0 8563070.0 7785200.0 6479350.0 7002040.0 11059760.0 11662700.0 10161790.0 14787890.0 10165890.0 True False 10413173.159915254 8848086.608464865 8881288.489828536 7299635.04565728 7893708.289657373 10295224.823074667 11098530.645159444 10920114.370324058 11143612.657073876 9517094.1967437 1.0941546804778026 0.9297046373137992 0.9331932947419279 0.7670025004223316 0.8294242051694967 1.0817613664680554 1.1661679936883294 1.1474210661969075 1.1709049450079725 1.0 23.18208971976163 2.5935167729608404 4.931949928317312 1.1347837736543525 0.905909186368335 0.5530026233413404 0.09104906090915622 0.16520533430994755 6.02688713075683 0.031142022906100818 0.02911530890995611 392.2082935831695 -2.5935167729608404 -0.2288745872860175 AS(ph)DLEDEESAAR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASDLEDEESAAR 12 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR 281.32 4.7197e-28 18829870000.0 8015064.0 7395195.0 6333402.0 6665122.0 7293673.0 7342844.0 7357014.0 7843503.0 8064854.0 7330458.0 True False 7971911.785981334 7641339.595085219 7225089.95068297 7508925.761809647 8222479.02356316 6835250.477475534 7001127.126297274 8428825.022361206 6077378.7952069575 6862621.894519161 1.1616422860697173 1.113472330624536 1.0528177221089936 1.094177397097552 1.19815416759738 0.9960115219132957 1.0201825532437871 1.228222267220185 0.885576808487826 1.0 22.710328438951155 1.5540729692693107 0.014968408064805488 1.255032848395066e-07 2.133594176114728 0.1733599161592997 0.0905741043201366 878.616974892883 13.443939212532316 956.5142603972934 956.3634772900892 35.815660878735116 -1.5540729692693107 2.1335940506114435 AS(ph)DPGLPAEEPK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASDPGLPAEEPK 12 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK 228.62 1.0617e-11 6655460000.0 7605660.0 4998940.0 4354430.0 3840080.0 4266200.0 6426400.0 5821350.0 5926970.0 8543000.0 6058560.0 True False 7564711.971628256 5165326.69597696 4967495.894615942 4326233.734267726 4809475.282251498 5982158.09411841 5539749.060783432 6369270.597943828 6437692.120335103 5671897.513805827 1.3337180287928645 0.9106875932444414 0.8758084719487053 0.7627489255116733 0.8479481990894355 1.054701372787041 0.9767011916733799 1.1229523422171404 1.1350155930471724 1.0 22.435400033907968 2.173816957830277 1.8110196499696567 1.090866557495893 0.9360162313680938 0.10586249794733138 0.149814222268825 0.6804022758312239 4.3867275317439915 0.08252823623407003 0.048985147687219587 149.2165373832549 -2.173816957830277 -0.15485032612779914 AS(ph)DPGLPAEEPKEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASDPGLPAEEPKEK 14 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 AS(1)DPGLPAEEPKEK;AS(1)DPGLPAEEPKEK 128.26 4.5282e-05 704720000.0 648370.0 524700.0 446910.0 490600.0 520680.0 694040.0 749500.0 631470.0 1310370.0 718870.0 True False 644879.247960679 542164.3223121517 509831.0433886433 552709.9096976486 586985.5116878513 646062.6483944269 713243.8216319556 678593.4979396877 987446.8715584093 672991.1011444295 0.9582284919727081 0.8056039989090416 0.7575598585503871 0.8212737267368896 0.8722039722214384 0.9599869111133706 1.0598116682658594 1.0083246223995106 1.467251008043411 1.0 19.36022790286872 2.1275841771499926 1.10999997759774 1.1852779097818897 0.8304732815046969 0.5475619206285463 0.12793553564735274 0.37090151230823415 0.8570089076301235 0.0896287979955793 0.04602027861746031 134.14799226226134 -2.1275841771499926 -0.35480462827719284 AS(ph)GDYDNDCTNPITPLCTQPDQVIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGDYDNDCTNPITPLCTQPDQVIK 25 0 Q8TAF3-4;Q8TAF3-3;Q8TAF3 Q8TAF3-4 WDR48 WD repeat-containing protein 48 1 AS(0.574)GDY(0.173)DNDCT(0.253)NPITPLCTQPDQVIK;AS(0.348)GDY(0.303)DNDCT(0.348)NPITPLCTQPDQVIK 74.579 0.00020989 132450000.0 123096.0 100149.0 94678.0 91419.0 88022.0 131170.0 118955.0 118208.0 150393.0 131186.0 True False 122433.26481325124 103482.39892365114 108007.83944407143 102992.63602659885 99231.07995273112 122102.52664096726 113200.69219777094 127029.2812080616 113330.66031295272 122813.59716601478 0.9969031739030539 0.8425972474673756 0.8794452889289655 0.8386093918198431 0.8079812190387543 0.9942101644976141 0.9217276817057196 1.0343258738391012 0.9227859368027191 1.0 16.90611077030799 2.723026642400585 24.844811444167927 0.9770864047483713 0.8698478261675245 0.44600918766610176 0.05647019570402054 656.9762929360157 1050756.8394816667 0.017757158014721403 0.016796969678126678 528.4776709804204 -2.723026642400585 -0.10723857858084673 AS(ph)GEMASAQYITAALR ddPTM_BT-474_Trastuzumab_2h_R1 24 ASGEMASAQYITAALR 16 0 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 1 AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(0.999)GEMAS(0.001)AQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR 420.5 6.258799999999996e-160 13549665500.0 4503266.1 4804743.899999999 4369275.1 4397452.6 4618328.4 4927308.100000001 4937006.4 5102884.6 5924260.8 5260920.2 True False 4479021.015677501 4964666.896182476 4984431.055660017 4954169.64827903 5206445.146762964 4586694.88868265 4698184.539236057 5483687.760774966 4464306.106867628 4925163.768735613 0.9094156511322171 1.0080206728754126 1.0120335667416027 1.0058893228541035 1.0571110710699396 0.9312776394966753 0.953914379265844 1.1134021158006564 0.9064279517376748 1.0 22.231740266363147 4.739568365775808 23.151927710239036 1.0054387861609464 0.9094155735752959 0.1727598134945425 0.056889218796252236 49.75012712179574 1142457.630689159 0.013323687575527704 0.08148279311913265 54899.497050442165 -4.739568365775808 -0.0960232125856505 AS(ph)GQAFELILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR 104.84 0.0021932 80880300.0 159030.0 143118.0 137789.0 135466.0 154237.0 183161.0 164113.0 146884.0 202560.0 176165.0 True False 158173.80014989385 147881.59611334204 157188.4935165421 152615.98171035812 173878.16771567782 170499.5111846169 156174.22721745833 157845.22994183903 152641.80216493955 164921.99887755534 0.9590824827882931 0.8966759869502626 0.9531081031418077 0.9253828036832509 1.0543054831925236 1.0338190923286257 0.9469581273593968 0.9570902063770742 0.9255393652987853 1.0 17.331424326545864 AS(ph)GQAFELILSPR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 AS(0.999)GQAFELILS(0.001)PR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR 194.19 1.2859e-06 377167000.0 135606.0 171132.0 170076.0 171521.0 182550.0 236220.0 231933.0 176595.0 251512.0 213083.0 True False 134875.912363243 176828.02516852133 194021.22247290716 193235.5410135555 205796.66044137935 219890.6674020682 220713.51471989907 189773.41563123994 189530.2376881332 199483.86051046572 0.676124434418427 0.8864277276168125 0.9726161403555152 0.968677568797189 1.0316456675480392 1.1022980347351552 1.1064229163958834 0.9513221528078643 0.9501031171300682 1.0 17.605912502571584 5.108614238586717 1.0165775767095844 1.0217638599341015 0.22893211903581812 0.8048030390423555 0.05126134080163672 1.6266031964758818 0.8155397185186061 0.017149031197912286 1.6737660607019131 128414.55129080586 -5.108614238586717 -0.7928317408982833 AS(ph)GVAVSDGVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 AS(1)GVAVSDGVIK 116.19 0.00091117 225600000.0 84500.0 145930.0 94546.0 83676.0 85425.0 101250.0 104320.0 113880.0 216970.0 109350.0 True False 84045.06138883253 150787.191833452 107857.25499143617 94269.37302050632 96303.36739635626 94250.82581686314 99273.64305890014 122378.3038709227 163500.65074904668 102371.18938075493 0.8209835393846896 1.4729455889451544 1.053589937206616 0.920858432833919 0.940727249325684 0.9206772568237996 0.9697420110033701 1.19543696435678 1.5971354024317281 1.0 16.64345022506934 1.5460282085451165 4.893694429657707 1.3273252056387932 1.0250963441715892 0.22671450342846533 0.21373551131717639 0.20524559720565344 10.680507621438059 0.12179462458161473 0.05373727016970588 35.15832760259516 -1.5460282085451165 -0.30222886146720396 AS(ph)HSSERPPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 AS(0.5)HS(0.5)S(0.001)ERPPPR;AS(0.993)HS(0.007)SERPPPR 199.31 3.4673e-08 349770000.0 134646.0 136439.0 129502.0 151398.0 135143.0 145814.0 123081.0 121096.0 168054.0 152167.0 True False 133921.080896577 140980.28963588274 147734.75594843714 170564.9712768134 152352.65999468265 135734.22138923523 117127.10181492013 130132.79843302853 126639.34350822831 142455.57178327703 0.9400901573742313 0.9896439140363096 1.037058460396281 1.1973204637885293 1.0694749112829538 0.9528179185278394 0.8222009174418952 0.9134974280332425 0.8889743091333027 1.0 17.120152524507844 2.5681540591856455 4.278467995915143 0.8965900253400025 1.0504604804849897 0.4452230179962233 0.07407661444997735 0.20629186486652412 6.666553569144909 0.02624875384701333 0.024275225836768624 369.9593938236101 -2.5681540591856455 0.1538704551449872 AS(ph)LEDAPVDDLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASLEDAPVDDLTR 13 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR 204.18 8.3827e-08 3303600000.0 3082770.0 3198030.0 2924320.0 2890240.0 3006480.0 3696670.0 3439520.0 3395020.0 3901430.0 3612910.0 True False 3066172.708847946 3304474.4953000415 3336038.837354903 3256144.0876570195 3389337.4071969157 3441127.9039251683 3273137.2773576286 3648373.631962247 2939974.8529836084 3382330.990632128 0.9065265100725418 0.9769814085174627 0.9863135354270656 0.9626923256994653 1.0020714757320301 1.0173835480489306 0.9677164317812397 1.0786565957225842 0.8692155975054804 1.0 21.68958641629209 6.093550231880862 0.932515271243424 0.9953055192972694 5.229811234341367e-08 0.16292696748698443 0.05018175900732269 34.14552935768393 3.0868169091885744 0.014732443921313773 60.06202872512788 1240367.0816235184 -6.093550231880862 -0.995305466999157 AS(ph)LGS(ph)LEGEAEAEASS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 3 AS(1)LGS(1)LEGEAEAEAS(0.156)S(0.844)PK 104.06 0.00025906 0.0 141660.0 95484.0 82333.0 77981.0 80011.0 148560.0 119000.0 109050.0 185870.0 113490.0 True False 140897.31829990557 98662.12721870304 93924.77074873503 87853.38660442796 90199.92658764833 138290.39687262403 113243.51537585414 117187.86474467968 140064.82903039746 106246.97103632268 1.326130212707306 0.9286111995133809 0.884023043975766 0.8268789759135203 0.8489646877256544 1.3015937821450614 1.0658517063713708 1.1029760528854666 1.3182947962113054 1.0 16.697062186904418 2.7473858969634906 24.981285287033142 1.151242596887875 0.9490743122749093 0.26891895396108856 0.15961914955298004 867.4359698279935 2455407.4663181324 0.049175267974756555 0.05146298329949275 558.9666498782452 -2.7473858969634906 -0.20216828461296565 AS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK 245.31 4.8844000000000005e-24 632484000.0 1859770.0 1278000.0 1034022.0 1064860.0 1002320.0 1861600.0 1579670.0 1675330.0 2431270.0 1752420.0 True False 1849757.2049598715 1320537.4574326866 1179603.3097196575 1199671.166817445 1129959.510783912 1732911.9737350345 1503255.3271745867 1800351.6317533648 1832116.0858488968 1640579.0552777564 1.1275026332984 0.8049215630203901 0.7190164386927066 0.7312486179547965 0.6887565138350528 1.056280688309559 0.9162955740161389 1.0973879167612306 1.116749650042748 1.0 20.645773684612497 2.7229831497739423 24.471228587789458 1.0376697231842835 0.8038624404436308 0.4413016164043013 0.12521264181533612 579.481299492505 910327.4215886792 0.041616887740170486 0.039373362596037846 528.4247489836804 -2.7229831497739423 -0.23380728274065277 AS(ph)LSDLSSLDDVEGMSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASLSDLSSLDDVEGMSVR 18 0 A0A087WTM5;H7BYJ1;Q969K3;Q969K3-2 A0A087WTM5 RNF34 E3 ubiquitin-protein ligase RNF34 1 AS(1)LSDLSSLDDVEGMSVR;AS(0.998)LS(0.002)DLSSLDDVEGMSVR 136.35 6.7891e-06 160146000.0 80379.0 102791.0 101125.0 105698.0 102915.0 87362.0 84197.0 91658.0 77875.0 89499.0 True False 79946.24839494652 106212.33629652826 115362.52100574294 119079.35596253996 116020.61522500418 81322.87056802766 80124.06944622513 98497.98538989318 58683.74972153753 83787.09719605115 0.9541594239490415 1.2676454949621287 1.3768530581243232 1.421213527470816 1.3847074204460228 0.970589425932044 0.9562817203076626 1.1755746252841344 0.700391249791421 1.0 16.35444047258515 2.7298348939978987 24.6462584558291 0.987881659790531 1.2933027150640792 0.4858924491793337 0.1633085901308925 495.9809357141035 1400921.2120523276 0.05370467134331605 0.05136453866581784 536.8276714633 -2.7298348939978987 0.30542105527354824 AS(ph)LSDLTDLEDIEGLTVR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASLSDLTDLEDIEGLTVR 18 0 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 AS(0.982)LS(0.018)DLTDLEDIEGLTVR;AS(0.999)LS(0.001)DLTDLEDIEGLTVR;AS(1)LSDLTDLEDIEGLTVR;AS(0.994)LS(0.006)DLTDLEDIEGLTVR;AS(1)LSDLTDLEDIEGLTVR 394.12 8.601599999999995e-127 326118000.0 223800.0 235143.0 224051.0 197506.0 213924.0 234704.0 217690.0 209674.0 221880.0 216455.0 True False 222595.0856665175 242969.59260805493 255595.43331379705 222510.2393492536 241165.95337311213 218479.46491378825 207159.50304344308 225320.93858299864 167200.64703967603 202640.65658355103 1.0984719918470014 1.1990170023352438 1.2613235548238177 1.0980532885191778 1.1901163243303878 1.0781620460438388 1.0222998017084932 1.111923650376134 0.8251090864914233 1.0 17.62856413113746 2.029036860928383 0.8208334764289488 0.9499991784318816 1.1789006850490293 0.5556337864968942 0.07740796394948063 0.47150636543284696 0.5921524485158339 0.0637730160124273 0.03290772324831925 106.91456195597917 -2.029036860928383 0.2289015066171477 AS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_BT-474_Trastuzumab_2h_R1 8 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR 237.33 3.2536e-37 16599060000.0 679296.0 856334.0 844082.0 662614.0 808170.0 1456222.0 901155.0 592112.0 1281825.0 955508.0 True False 675638.745812881 884836.559525165 962921.4087077344 746500.8644606556 911085.6591011193 1355556.8007178653 857562.6899035958 636298.4041238137 965936.4043250075 894526.6613884453 0.7553030837160114 0.9891673414761727 1.0764591490354571 0.8345205310057159 1.0185114635789299 1.515390048423855 0.9586776190354398 0.7113241355335111 1.0798296417747046 1.0 19.77076495691486 4.733907842639969 4.961507915372245 1.0071224628489097 0.7433898516578651 0.1376210550597773 0.19704695950280013 0.3837378019287574 29.185941976099944 0.0511003386140049 0.3467317163116918 54188.588992609955 -4.733907842639969 -0.26373261119104463 AS(ph)PATHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPATHR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AS(0.999)PAT(0.001)HR;AS(1)PATHR;AS(0.999)PAT(0.001)HR;AS(0.999)PAT(0.001)HR 99.802 0.010763 380676000.0 340563.0 313965.0 278239.0 282200.0 292255.0 204571.0 275992.0 279245.0 361770.0 318113.0 True False 338729.4466481063 324415.13522914937 317412.63270325755 317926.4910653823 329471.9419189007 190429.48827833592 262641.21256817423 300083.67987737857 272616.63096963917 297810.75598975853 1.1373982968558563 1.0893331711642602 1.0658199085132207 1.0675453611766648 1.1063131041856358 0.6394311973234594 0.881906402927926 1.0076321081153234 0.9154022327488206 1.0 18.18403633491444 AS(ph)PATPAGHPVSGLLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPATPAGHPVSGLLLR 17 0 Q9HCM7;A0A3B3IRR3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 AS(0.983)PAT(0.017)PAGHPVSGLLLR;AS(0.971)PAT(0.029)PAGHPVSGLLLR;AS(0.998)PAT(0.002)PAGHPVSGLLLR;AS(0.5)PAT(0.5)PAGHPVSGLLLR 201.14 7.5754e-12 2207115000.0 1408948.0 1499041.0 1271437.0 1305675.0 1321881.0 1511106.0 1653550.0 1270543.0 1673557.0 1471723.0 True False 1401362.3805168397 1548935.6734955802 1450444.2780714822 1470973.3211261278 1490214.709947469 1406646.7989809045 1573561.469325578 1365357.3703466263 1261131.3018648769 1377796.3781345463 1.017104125657668 1.124212327798935 1.0527276026340675 1.0676275133759152 1.08159284898479 1.0209395388928368 1.142085647993999 0.9909718097787703 0.9153248781016343 1.0 20.393931260006536 1.5544563518152708 5.97454497290948 0.9564203519621863 1.0718035905946088 0.5714228077497008 0.04170730052417151 0.08399005189978694 6.121575793881237 0.021049011732853198 0.009653450797670712 35.84729186258781 -1.5544563518152708 0.1153832386324225 AS(ph)PDMDGYPALK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPDMDGYPALK 12 0 H0YAU4;H3BLZ3;Q8IX03-2;H0YBE8;Q8IX03 H0YAU4;H0YBE8 WWC1 Protein KIBRA 1 AS(1)PDMDGYPALK 159.64 7.365199999999999e-05 59598000.0 134360.0 129430.0 106440.0 97510.0 111440.0 137410.0 115320.0 131610.0 162810.0 129160.0 True False 133636.62068879922 133737.99930791286 121425.82680693486 109854.75600207441 125631.22344337069 127911.17012834731 109741.53103481942 141431.4065020385 122687.65704222825 120916.89822056072 1.105193919587954 1.1060323352321326 1.0042089120202689 0.9085145055713537 1.0389881422049938 1.057843626579211 0.9075781189378787 1.169657910377902 1.0146444280967044 1.0 16.883656350747867 0.039677799955224025 8.964248929591488 0.999979473312171 1.0371968103324765 0.01629466952524583 0.07892675831796209 0.0 0.0 0.07679137753606159 0.01809990126413516 1.0956650283018854 -0.039677799955224025 0.037217337020305497 AS(ph)PDS(ph)SSCGERSPPPPPPPPSDEALLHCVLEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPDSSSCGERSPPPPPPPPSDEALLHCVLEGK 33 1 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 2 AS(0.988)PDS(0.298)S(0.277)S(0.257)CGERS(0.18)PPPPPPPPSDEALLHCVLEGK;AS(1)PDS(0.364)S(0.309)S(0.263)CGERS(0.064)PPPPPPPPSDEALLHCVLEGK 227.89 2.5547999999999996e-36 337935000.0 181337.0 170654.0 162771.0 170340.0 162078.0 221154.0 196396.0 186281.0 230766.0 220396.0 True False 180360.70174043483 176334.11522747838 185687.74196910553 191905.02653464614 182717.67258842956 205866.14452051872 186895.57517442224 200182.23413575144 173896.81140597543 206330.13858949128 0.8741364832758411 0.8546212222457129 0.899954525492491 0.9300872274236923 0.8855597821894531 0.9977512055575375 0.9058084119560667 0.9702035558364475 0.8428085814063049 1.0 17.654595045141722 3.8778212678377897 1.154726913785062 0.9374137770883499 0.858737202403328 0.2609060695250979 0.046328865065322605 0.7505184472016704 1.7913978777194701 0.01411448006732059 0.04978618672711051 7547.815364064457 -3.8778212678377897 -0.07867657468502198 AS(ph)PDSSS(ph)CGERSPPPPPPPPSDEALLHCVLEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPDSSSCGERSPPPPPPPPSDEALLHCVLEGK 33 1 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 2 AS(0.766)PDS(0.123)S(0.139)S(0.61)CGERS(0.363)PPPPPPPPSDEALLHCVLEGK 150.63 2.7115e-10 227670000.0 30098.0 35173.0 34432.0 29300.0 30463.0 43026.0 45646.0 35893.0 47868.0 43280.0 True False 29935.955712202154 36343.71204247252 39279.726311690865 33009.3769958033 34342.28248165287 40051.71389230964 43437.928595346544 38571.51792096094 36071.57279833786 40517.833346127794 0.7388340698395974 0.8969806389202155 0.9694429111285326 0.8146876145577004 0.8475843757063799 0.9884959432594463 1.0720693829868329 0.9519639806862265 0.8902641088972529 1.0 15.3062694089607 2.7364466543601047 24.286878121189357 0.9831330215477485 0.8602055515599243 0.45481167660814614 0.06933000738397116 126.4750051189424 1453035.524552801 0.02258779974502052 0.022280527819747344 545.0629399287346 -2.7364466543601047 -0.12292746998782422 AS(ph)PDSSSCGERS(ph)PPPPPPPPSDEALLHCVLEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASPDSSSCGERSPPPPPPPPSDEALLHCVLEGK 33 1 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 2 AS(0.894)PDS(0.042)S(0.045)S(0.048)CGERS(0.97)PPPPPPPPSDEALLHCVLEGK;AS(1)PDS(0.271)S(0.23)S(0.167)CGERS(0.331)PPPPPPPPSDEALLHCVLEGK;AS(1)PDS(0.021)S(0.021)S(0.015)CGERS(0.942)PPPPPPPPSDEALLHCVLEGK 242.04 7.982699999999997e-47 732594000.0 219895.0 229750.0 213660.0 217805.0 205054.0 278895.0 264408.0 224120.0 293934.0 264960.0 True False 218711.10975263102 237397.08986319226 243741.47083398775 245379.09066795048 231166.41144972108 259615.64509821284 251617.57490335187 240844.9724583 221497.90421380973 248050.02595633108 0.881721777328638 0.957053275636366 0.9826302976355994 0.9892322716835723 0.9319346392264344 1.0466261557413337 1.0143823768341345 0.9709532241722099 0.8929565855107154 1.0 17.92027158263321 4.73462641125968 2.422984643211215 0.9800819676329474 0.8594655732180465 0.3431934476168599 0.040123796330835605 0.6147793806885846 4.449244013011824 0.010062310149769625 0.1542674882602569 54278.32177050412 -4.73462641125968 -0.12061639441490091 AS(ph)PEPPGPESSSR ddPTM_BT-474_Trastuzumab_2h_R1 11 ASPEPPGPESSSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR 276.03 3.3677999999999997e-32 39692037000.0 6578266.0 6666821.0 5964231.0 6004654.0 5957424.0 6711277.0 6532670.0 6110109.0 7128127.0 6351623.0 True False 6542849.346770069 6888722.106806606 6803942.882774818 6764842.58072896 6716066.633981501 6247342.217636728 6216659.79487715 6566076.360084822 5371495.612858224 5946256.982241961 1.1003307402135132 1.1584972071303417 1.1442396289118129 1.1376640129970235 1.1294612146832061 1.0506344135973158 1.0454744578720236 1.104236897210111 0.9033406441900815 1.0 22.503550383561084 1.9297544494898429 0.7009146375004079 0.9760613850452429 1.140399198883792 0.6283519547282264 0.04588671742252048 0.4635707918611658 0.440412924972937 0.041002783061027254 0.022137442531800392 85.06569399713905 -1.9297544494898429 0.16433781383854917 AS(ph)PEPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPEPQR 7 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 AS(1)PEPQR;AS(1)PEPQR;AS(1)PEPQR;AS(1)PEPQR 88.948 0.019126 991130000.0 1896833.0 1820236.0 1676027.0 1634668.0 1705869.0 1552533.0 1882196.0 1788411.0 2002221.0 1884900.0 True False 1886620.661885959 1880821.4549041018 1911997.0333121605 1841616.8011937146 1923101.3056722812 1445210.047979574 1791146.988793036 1921871.3101870476 1508800.4629368458 1764604.0682559228 1.069146725786841 1.0658603188890097 1.0835274992887873 1.0436430666364205 1.0898202833528612 0.8189996124218236 1.0150418561390644 1.0891232456958817 0.8550362600195607 1.0 20.75091308548851 AS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 AS(1)PEPQRENAS(0.995)PAPGT(0.003)T(0.003)AEEAMSR;AS(0.999)PEPQRENAS(1)PAPGTTAEEAMSR;AS(1)PEPQRENAS(0.875)PAPGT(0.058)T(0.064)AEEAMS(0.003)R;AS(1)PEPQRENAS(0.991)PAPGT(0.004)T(0.005)AEEAMSR 88.838 0.005996199999999999 2290360000.0 645045.0 749902.0 651265.0 699645.0 720126.0 787404.0 762271.0 743657.0 945310.0 835861.0 True False 641572.1493912376 774862.0347446676 742957.4511031415 788219.9852637821 811829.7775787925 732972.6148296421 725397.0395719974 799152.4615537303 712351.0170050297 782515.6353633939 0.8198841280574499 0.9902192361751697 0.9494474199970689 1.0072897583672422 1.0374614140480214 0.9366875008053425 0.9270064479096687 1.0212606949158407 0.910334547723407 1.0 19.577760053109383 4.741546598759356 24.787708199589986 0.9768726064912754 0.8198840636496185 0.5681216102996929 0.04069453250279035 179.27137723304142 1488111.9858158168 0.009437947330683753 0.06650574985170803 55150.13739857947 -4.741546598759356 -0.15698854284165686 AS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 AS(1)PEPQRENASPAPGTTAEEAMSR 143.48 1.48e-07 288130000.0 20575.0 35089.0 25740.0 33150.0 31869.0 34767.0 33111.0 25646.0 45428.0 39655.0 True False 20464.22648609739 36256.91615325157 29363.968263909268 37346.786601053944 35927.328247637975 32363.639122714845 31509.294433696716 27559.834747749268 34232.87810401298 37124.18394964644 0.5512370726816281 0.9766387377680493 0.7909660264515773 1.0059961628169236 0.9677607539163198 0.8717670176026339 0.8487538601908259 0.742368769240293 0.922117995925376 1.0 15.180071693012005 7.999996956073793 0.020947014976370797 1.5292490692399137 1.2314601115640111e-08 0.13887946579816723 0.12573525890679285 8514.025788937315 13.736060039377223 366.3743656653976 681.4474061236315 99999299.11254537 -7.999996956073793 -1.5292490569253125 AS(ph)PFEEDQNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPFEEDQNR 10 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01;A0A0C4DG68 Q8TB72-3 PUM2 Pumilio homolog 2 1 AS(1)PFEEDQNR 107.39 0.0024029 171750000.0 286510.0 247790.0 224890.0 200390.0 250020.0 272080.0 227190.0 247120.0 323310.0 260560.0 True False 284967.4619942535 256037.54035778175 256552.5572210782 225759.35345355043 281858.56501535815 253271.7500074284 216199.95174991846 265561.3492499338 243634.58263204288 243930.83772336092 1.1682305716402768 1.0496317019504966 1.0517430252587885 0.9255055882257144 1.1554855779858824 1.0382932816992205 0.8863166041970809 1.0886747724414565 0.9987854955360174 1.0 17.89611262952979 4.888873336887863 1.710787714207833 1.0197341440172059 1.2643656014177231 0.28187777023379756 0.07204056176195255 1.9187121825630609 4.081544202248063 0.01824090683123609 0.8626395775629665 77423.59569454967 -4.888873336887863 0.24463145740051728 AS(ph)PGGVSTSSSDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPGGVSTSSSDGK 14 0 P54259 P54259 ATN1 Atrophin-1 1 AS(0.999)PGGVSTSSSDGK 184.0 8.535e-08 0.0 184230.0 158050.0 133690.0 122270.0 139290.0 165810.0 163630.0 161850.0 211510.0 175870.0 True False 183238.12614987735 163310.59870675762 152512.38994568863 137749.3694633746 157027.7558634877 154347.9449747562 155714.59177269752 173928.0688576474 159386.19458879522 164645.8260301179 1.1129229970054537 0.9918903056606122 0.9263058385566983 0.8366405197431288 0.9537305600128808 0.9374543448585331 0.9457548698757379 1.0563770309356737 0.968054875315451 1.0 17.329006412777733 1.7629271755057057 24.999999997476948 1.0130729603874356 0.9523122593253182 0.09912421860479048 0.06764396406724825 29.43309280240585 30219.619725593013 0.032797582133992746 0.01818865776337254 57.93315433063769 -1.7629271755057057 -0.060760701062117395 AS(ph)PGLLPVANGNSLNK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPGLLPVANGNSLNK 16 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK 332.86 1.3724999999999995e-71 1689150000.0 2153780.0 2117560.0 2018690.0 1801110.0 1700950.0 2102960.0 2306810.0 2303930.0 2655710.0 2138240.0 True False 2142184.287787452 2188041.70450795 2302904.0052319705 2029130.3413280312 1917555.9001794795 1957587.3250353616 2195220.7874300354 2475860.9557194887 2001245.855190815 2001775.6925606336 1.0701420222798341 1.0930503915296568 1.1504305970895965 1.0136651917939947 0.9579274577595546 0.9779254150754787 1.0966367488566866 1.2368323608487892 0.9997353163135172 1.0 20.932848892468854 -0.6919175332664643 7.858642306979327 0.9999961281941042 1.0755297662026837 0.0463848990908029 0.08083260656824941 0.0 0.0 0.08745801648262153 0.02061405217466218 0.20327429650865508 0.6919175332664643 0.07553363800857948 AS(ph)PHDVLETIFVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPHDVLETIFVR 13 0 H0YEM7;O75143-4;O75143-3;O75143-2;O75143;O75143-5;H0YCL5 H0YEM7 ATG13 Autophagy-related protein 13 1 AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR 222.45 1.1230999999999998e-11 132391000.0 155085.0 165644.0 147170.0 143025.0 152800.0 152626.0 148625.0 140077.0 166249.0 151781.0 True False 154250.0395915634 171157.36040608748 167890.25677542828 161131.9503353165 172258.17428344415 142075.32386295838 141435.4409473642 150530.25703659354 125279.16157246733 142094.2066337484 1.0855477027937317 1.2045344033430592 1.1815418851534876 1.1339797318453553 1.2122814741310615 0.99986711090313 0.9953638807521394 1.0593694183788174 0.8816626978704185 1.0 17.11648820965689 2.727633697114182 24.247865545427047 0.997236576771465 1.1652061995136576 0.7298105470246017 0.05346596112674242 254.84078832244862 565514.2899410849 0.016669631123243298 0.015861060932215353 534.1136746185837 -2.727633697114182 0.16796962274219251 AS(ph)PIKMDLAPSK ddPTM_BT-474_Trastuzumab_2h_R1 7 ASPIKMDLAPSK 12 1 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK 149.09 4.0562e-05 4091380000.0 12542180.0 9105490.0 8043040.0 6920540.0 7266600.0 12050500.0 11733470.0 11184000.0 19064980.0 12619610.0 True False 12474654.296447208 9408560.730265068 9175430.120643081 7796679.654421057 8191958.437487416 11217477.298825754 11165877.229891792 12018606.87120127 14366671.136643583 11814215.685608301 1.0559020275584974 0.7963762454181597 0.7766431868871579 0.6599405209707422 0.6933984155602133 0.9494898008752731 0.9451221754393485 1.017300444738109 1.2160495050166218 1.0 23.494020520011482 2.0959394745877726 1.4578127718495044 1.0884975835075292 0.7939921589644753 0.5066946161283645 0.1169988582447821 0.3414040179119303 1.373726562889922 0.07740508504116839 0.040034922768608316 124.7209684862462 -2.0959394745877726 -0.29450542454305395 AS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPITNDGEDEFVPSDGLDKDEYTFSPGK 29 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 AS(0.996)PIT(0.004)NDGEDEFVPSDGLDKDEYTFSPGK 107.6 4.8035e-10 0.0 147500.0 160200.0 142870.0 126540.0 131400.0 188960.0 181780.0 180900.0 272000.0 160390.0 True False 146705.87638879046 165532.16015705513 162984.85415169838 142559.95102556134 148133.0111311818 175897.63996399447 172986.60693296432 194399.67659158734 204969.24461326795 150153.77288321254 0.9770375633710929 1.10241758817345 1.0854529394906758 0.9494263666384356 0.9865420514368128 1.1714500181144643 1.1520630058860448 1.2946706090614761 1.3650622337188296 1.0 17.19608120009122 2.4458856319029025 2.1034393832340244 1.2385043448404502 1.0254787395042948 0.41329949137126354 0.10165842447599421 0.27609271253294054 2.4861008129385165 0.040851932642566084 0.03272791001509482 279.18085432095563 -2.4458856319029025 -0.21302560533615544 AS(ph)PLEQAQDSPIDFHLQSWMNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPLEQAQDSPIDFHLQSWMNNK 23 0 Q8TEP8;K7ELX0;H0Y9P3 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 AS(1)PLEQAQDSPIDFHLQSWMNNK 192.42 5.9332e-18 53671000.0 38077.0 34823.0 28446.0 27724.0 30291.0 42319.0 36489.0 33632.0 37874.0 41074.0 True False 37871.99766275241 35982.06250405195 32450.94954293561 31233.855557394236 34148.379301176734 39393.587138210634 34723.887668483556 36141.79061983557 28540.4601855989 38452.6221547794 0.9849002627261709 0.9357505545191962 0.8439203290822178 0.8122685478163699 0.88806373629665 1.0244707624786593 0.9030304234835547 0.9399044485017881 0.7422240301511276 1.0 15.230794361110021 -1.2211266455291248 3.894661093149155 1.0000902241687482 0.900899443649719 0.13245473603356483 0.07842910005083609 12146395069.374111 2429077181.821941 10394090.630770177 0.018251743688675538 0.06009984535014506 1.2211266455291248 -0.09919078051902919 AS(ph)PLPFEPWQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPLPFEPWQR 11 0 Q9C073;Q9C073-2 Q9C073 FAM117A Protein FAM117A 1 AS(1)PLPFEPWQR 110.31 0.0019009 29297000.0 44232.0 45024.0 31407.0 35855.0 39692.0 41121.0 45784.0 39327.0 49036.0 46371.0 True False 43993.85982663721 46522.59662241728 35828.83260546224 40394.23932370401 44746.54092708419 38278.40205842199 43569.25300813538 42261.78043845962 36951.734848736014 43411.563079789536 1.0134134019956256 1.071663707130511 0.8253292455655098 0.930494929414549 1.0307516650538704 0.8817559042522173 1.0036324406945683 0.9735143689892796 0.8511956775391732 1.0 15.405791748854426 4.286088206129624 24.99999918873559 0.9424081664053454 1.0425387780428033 0.2882149187386126 0.06586490948176872 151.21007400939214 79535.54268675818 0.015451867031653483 0.04231644867696639 19323.607437263032 -4.286088206129624 0.10013061163745784 AS(ph)PNLIGATGANSLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASPNLIGATGANSLGK 16 0 Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-3;Q02078-5;Q02078-2;Q02078 Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 AS(1)PNLIGATGANSLGK;AS(1)PNLIGATGANSLGK;AS(1)PNLIGATGANSLGK 188.34 1.2534e-09 278920000.0 447087.0 423847.0 361954.0 339092.0 354751.0 467020.0 452364.0 431263.0 542320.0 432933.0 True False 444679.9332680357 437954.49117407773 412913.9770394336 382021.0124321138 399926.43707608694 434736.00664682843 430481.42512170534 463446.0349691409 408672.50271568896 405302.8452874113 1.0971547287132934 1.080561107000155 1.0187788756988 0.9425569469200551 0.9867348372363095 1.0726201695883613 1.0621228795382358 1.143456159653897 1.0083139249266513 1.0 18.628640777794992 2.699029245591714 20.995730687334333 1.0728536836615719 1.0232920441239095 0.04169415551507727 0.055842054884498435 167.0496820076173 88721.34028051744 0.019342152962452192 0.018236980968377187 500.0682086681263 -2.699029245591714 -0.04956163953766235 AS(ph)PNPVAMETR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPNPVAMETR 11 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 AS(1)PNPVAMETR;AS(1)PNPVAMETR 118.26 0.00078055 529550000.0 216430.0 254993.0 215495.0 224719.0 201640.0 202599.0 211304.0 179490.0 197330.0 232245.0 True False 215264.76492763328 263480.28785847675 245834.82288388195 253168.40235904188 227317.6587860846 188593.80799674732 201082.4182603319 192884.45523175198 148700.6655865297 217422.92526505212 0.9900739062599406 1.211833055494391 1.1306757214502285 1.1644052808617757 1.0455091546071793 0.8674053472826736 0.9248445995986848 0.8871394541151251 0.6839235807597304 1.0 17.73014454186025 2.8702382169378913 2.8786191696772425 0.8700511166650471 1.1305500706515978 0.6328032525430695 0.09112358784742233 0.16534049304272858 2.641242388813799 0.028574967746927558 0.030793720217004685 741.7169724563133 -2.8702382169378913 0.26049895398655076 AS(ph)PPAESMSVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPPAESMSVYR 12 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 AS(1)PPAESMSVYR;AS(1)PPAESMSVYR 130.77 0.00022086 179110000.0 49263.0 47699.0 34469.0 47787.0 44570.0 44901.0 41286.0 44106.0 57730.0 46537.0 True False 48997.77348163381 49286.632380345625 39321.935590081106 53836.829300288475 50245.72531291298 41797.09955558487 39288.83845216399 47397.41368572993 43503.21504236747 43566.968817669804 1.1246541774960803 1.1312844046280321 0.9025630347304079 1.2357258437142737 1.1532986268380099 0.9593758916418552 0.9018033505289287 1.0879208485697216 0.9985366488183021 1.0 15.410947120439872 2.735054700424926 24.969993203423584 0.9953009636468145 1.1062306419097587 0.3087522134616312 0.08948487467784501 428.1427187393555 3049321.794928974 0.029233943514067693 0.02861201669263613 543.3187594755016 -2.735054700424926 0.1109296782629442 AS(ph)PPALLPGPAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPPALLPGPAPR 13 0 A6NEL2 A6NEL2 SOWAHB Ankyrin repeat domain-containing protein SOWAHB 1 AS(1)PPALLPGPAPR;AS(1)PPALLPGPAPR;AS(1)PPALLPGPAPR;AS(1)PPALLPGPAPR 158.01 5.0293e-05 590530000.0 263670.0 264106.0 232142.0 219671.0 241927.0 272284.0 303650.0 226416.0 293733.0 321925.0 True False 262250.4300164907 272896.6085545516 264825.57578556397 247481.32607662494 272734.96943632734 253461.64796759284 288961.2894443539 243312.31163715172 221346.43797054797 301379.4708861414 0.8701668671903889 0.905491697069339 0.8787113966551916 0.8211618573387213 0.9049553661847269 0.8410050200909288 0.9587955297509996 0.8073287504346075 0.7344443114181813 1.0 18.20122162242943 1.620601380835201 24.999999999904997 0.8281655712788518 0.8806579362899812 0.029122115785876757 0.07161287438312519 1.7950653051822574 3515.42185781067 0.030890630520952537 0.016987354145911383 41.74470350930841 -1.620601380835201 0.052492365011129416 AS(ph)PPGDLQNPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASPPGDLQNPK 11 0 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK 193.34 1.0465e-06 1371620000.0 857140.0 737270.0 644420.0 578510.0 602950.0 814040.0 795570.0 725400.0 961430.0 761550.0 True False 852525.2534772069 761809.5862608742 735148.7346009483 651749.3066840332 679732.1085353583 757767.3308440414 757085.2397274649 779533.0315065626 724498.4590019638 712947.2270042418 1.195776098406979 1.0685357308449728 1.0311404641967623 0.9141620613669286 0.9534115328445119 1.0628659487577095 1.061909228413284 1.093395137788964 1.0162020855965168 1.0 19.443435765472024 4.704215206770118 2.3848314421083914 1.0222415018072453 1.2285882171461002 0.5356006285604956 0.05031402361156495 0.47335619446097205 3.4618955691912 0.014701635785656707 0.19531292111891252 50607.537637269415 -4.704215206770118 0.20634671533885496 AS(ph)PPHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPPHSK 7 0 Q9HCM7;A0A3B3IRR3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 AS(1)PPHSK;AS(1)PPHSK 116.3 0.0035334000000000008 759660000.0 1074850.0 898570.0 811780.0 755610.0 744030.0 605470.0 954470.0 920300.0 1145630.0 1063820.0 True False 1069063.1270270604 928478.3592529648 926071.5678817511 851270.1485255603 838777.8102886847 563615.2840230728 908298.639670517 988977.4591887097 863304.8371555065 995926.0968178771 1.0734362021869557 0.9322763628943782 0.9298597263799784 0.8547523267494317 0.8422088877565281 0.5659207905324525 0.9120140968016179 0.9930229384977768 0.8668362440886788 1.0 19.925679164812355 4.808040630139668 1.2470270587348593 0.8626895320426059 1.1868397159990753 0.23457434733611326 0.11367425536093342 2.708644697875187 3.2445710245752664 0.03458599341802189 1.1748032560720654 64274.7846363812 -4.808040630139668 0.32415018395646944 AS(ph)PPPQGPLPGPPGALHR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASPPPQGPLPGPPGALHR 18 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR 162.83 2.2302e-11 5694000000.0 1356320.0 1453518.0 1387793.0 1499960.0 1460600.0 1378360.0 1395940.0 1551460.0 1854970.0 1541470.0 True False 1349017.723821318 1501897.467959814 1583182.191487 1689854.7822056357 1646598.7523455394 1283077.2175104322 1328413.0491913431 1667237.8233542512 1397837.4988245356 1443092.064881136 0.9348105756041514 1.0407495852203454 1.0970763612489292 1.1709958244035006 1.1410212781408133 0.8891166743516924 0.9205324327666935 1.155323256171863 0.9686405551261015 1.0 20.460731911641545 2.7694611009958994 24.99103831683618 1.0038857994858041 1.0812656922422583 0.1915031624505087 0.0890355225376535 1443.051071753816 1167077.6641792003 0.029751384447528735 0.031553579994165255 588.1134354827051 -2.7694611009958994 0.07737989275645418 AS(ph)PS(ph)PPPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPSPPPKR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 AS(1)PS(1)PPPKR 63.283 0.030846 0.0 92409.0 80423.0 58906.0 71984.0 73828.0 94106.0 91185.0 98408.0 121520.0 102330.0 True False 91911.48021160516 83099.83093826986 67199.45277986942 81097.16701931418 83229.55818716041 87600.6737216959 86774.03318947273 105751.70466569863 91573.02428457463 95799.21179087943 0.9594179168429817 0.867437522551531 0.7014614371416691 0.8465327167444924 0.8687916803411976 0.9144195665505039 0.9057906799785805 1.1038890893647908 0.9558849449040335 1.0 16.547726165468447 2.1865919723306178 1.667422049480609 1.027469442500175 0.8429030823155642 0.4835903116883312 0.07230870948857934 0.29494872692414664 1.6066923585001598 0.041426088742939016 0.024243256735695547 153.67101943198043 -2.1865919723306178 -0.1845663601846107 AS(ph)PSVTCK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPSVTCK 8 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 AS(1)PSVTCK;AS(0.982)PS(0.01)VT(0.008)CK 121.6 0.0014960000000000002 643330000.0 897250.0 890900.0 755230.0 697570.0 670890.0 816330.0 892150.0 832630.0 1091480.0 900760.0 True False 892419.3056938468 920553.0679395782 861559.8194231613 785882.2904765365 756323.8648234282 759899.028534122 848993.2961560371 894765.0786094693 822499.3790826829 843272.7256205663 1.0582807656172128 1.0916433556678133 1.0216858594461686 0.93194320959237 0.8968911739281592 0.9011308031751064 1.0067837727483253 1.0610625144445527 0.9753658028930128 1.0 19.68563976784423 4.0131807087778935 4.679203590197929 0.9723373202408204 1.0729986906954962 0.44782304170667486 0.04780091767268088 0.20820054999562662 12.015079810872514 0.014817499839892502 0.03173598228568945 10308.149505749505 -4.0131807087778935 0.10066137045467582 AS(ph)PTPLASPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPTPLASPGK 11 0 A0A1B0GTL5 A0A1B0GTL5 1 AS(0.991)PT(0.009)PLASPGK 99.215 0.005182899999999999 211950000.0 273650.0 249400.0 235800.0 220880.0 210520.0 307740.0 285780.0 260060.0 361480.0 276320.0 True False 272176.6988053729 257701.12823451654 268998.59038965794 248843.38535266343 237328.47415020067 286466.65814203874 271955.7296143836 279466.9977579224 272398.0975838385 258685.02103054593 1.0521548473161646 0.9961965606199007 1.0398692174677333 0.9619551389613689 0.9174418882265957 1.1073956157214542 1.0513006455919636 1.0803369930140736 1.0530107096988555 1.0 17.98083699266281 2.720163301365037 24.99866563832922 1.0641069607303586 0.9944929847889997 0.3538270924248198 0.04349314497614483 874.0950280095366 1187737.3782012174 0.014047917032124364 0.013266105866172833 525.0048329837598 -2.720163301365037 -0.06961397594135887 AS(ph)PTSDIESVER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPTSDIESVER 12 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 AS(0.999)PT(0.001)SDIESVER 298.26 2.3962e-36 1443600000.0 220430.0 235540.0 207920.0 207630.0 175520.0 225350.0 231240.0 219710.0 279980.0 227910.0 True False 219243.22937207544 243379.8065130635 237193.32872696224 233915.93671121637 197871.4316114539 209772.0849168407 220054.03777741638 236105.87586477422 210982.6805397895 213364.58867643218 1.0275520916198435 1.1406757232904727 1.1116808566892344 1.0963203320769894 0.9273864648248934 0.9831626054638357 1.0313521992683086 1.1065841681106197 0.9888364411760245 1.0 17.70296123176087 3.418752334049742 24.999214392497514 1.0180133115218961 1.0990345051715318 0.4069964139648392 0.05062602641890968 89.3794631300561 38280.43051516715 0.01538377806442545 0.02082973648894898 2622.722451853851 -3.418752334049742 0.08102119364963567 AS(ph)PVAALK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPVAALK 8 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 AS(1)PVAALK;AS(1)PVAALK;AS(1)PVAALK;AS(1)PVAALK 160.36 0.00037112 2354920000.0 2645590.0 2627280.0 2360870.0 2041570.0 2106080.0 2669740.0 2654750.0 2483670.0 3555750.0 2734980.0 True False 2631346.437392679 2714727.426575702 2693259.9749500933 2300032.5526731135 2374276.8042858387 2485187.1576919705 2526329.600370161 2669014.0672207125 2679483.0571089215 2560431.2348658177 1.027696585466228 1.0602617987192187 1.0518774877745298 0.898298896433221 0.9272956726800223 0.9706127326720452 0.9866812925763093 1.0424080252093102 1.046496785628122 1.0 21.287955382677627 -0.07730372668955532 7.1496552159164155 1.00000000065353 1.0008132338981466 0.0 0.05263774432125159 0.0 0.0 0.056018660264848315 0.01320372485967494 0.8369437553093965 0.07730372668955532 0.0008132332446166846 AS(ph)PVPAPSSGLHAAVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASPVPAPSSGLHAAVR 16 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR;AS(0.964)PVPAPS(0.026)S(0.01)GLHAAVR;AS(1)PVPAPSSGLHAAVR 189.47 5.8777e-13 4126780000.0 2379060.0 3379450.0 2930790.0 2950450.0 2982010.0 3103890.0 3261890.0 3098900.0 3018820.0 3397160.0 True False 2366251.405298416 3491932.9503293396 3343419.7571166535 3323976.667483542 3361751.2977419747 2889325.3900711457 3104099.9190701237 3330155.6538953516 2274872.261115533 3180350.3403450004 0.7440222466313973 1.0979711593504944 1.0512740419516058 1.0451605363461187 1.0570380423489119 0.9084928013804024 0.9760245214787862 1.0471033997889996 0.7152898321474727 1.0 21.600754267676123 1.2665605089367324 24.99997632792336 0.8576443553201445 0.9992465349314341 0.1713770153181462 0.11603301603345938 278.5922713856435 248744.2866515636 0.07216545859952694 0.026341908159533807 18.473981693794624 -1.2665605089367324 0.14160217961128962 AS(ph)QEANLLTLAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASQEANLLTLAQK 13 0 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2;H7C1L3 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 AS(1)QEANLLTLAQK;AS(1)QEANLLTLAQK 195.45 1.709e-07 440370000.0 456680.0 444520.0 415240.0 434860.0 421490.0 479970.0 440860.0 433250.0 477650.0 463410.0 True False 454221.28562191845 459315.5794819856 473702.18266921805 489913.2314128001 475164.25313304213 446790.8036278502 419533.917551253 465581.3149989223 359939.55768208584 433834.7770547384 1.046991411582036 1.0587338862048676 1.0918953659850312 1.1292622383543633 1.095265474932382 1.0298639649432186 0.9670361615530858 1.0731765631139762 0.8296696731545591 1.0 18.726786181373654 2.0070685036712304 1.0277453265888987 0.9514562201358453 1.0843487140663342 0.4451916867432344 0.0604530749503631 0.5211100989580116 1.0140864386181991 0.04747045031359636 0.022421461450363153 101.6409004042155 -2.0070685036712304 0.13289249393048885 AS(ph)RYSIPDLAVDVEQVIGLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASRYSIPDLAVDVEQVIGLEK 21 1 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8N8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 AS(0.48)RY(0.041)S(0.48)IPDLAVDVEQVIGLEK 97.059 0.00071899 19024000.0 15533.0 13839.0 11385.0 14330.0 12834.0 16780.0 14431.0 9659.7 17876.0 14316.0 True False 15449.372053878533 14299.62274914785 12987.909039806013 16144.176530712 14468.333826922275 15620.038095871236 13732.917398226487 10380.555864962711 13470.699326127853 13402.34062345576 1.152736860518245 1.0669496583396585 0.9690776711849539 1.204578885456596 1.0795378384579253 1.1654709080094734 1.0246656001409318 0.7745330578149499 1.0051005047993227 1.0 13.710197358662906 1.9833947630863464 12.581294411684594 0.9009925610202157 1.1010674199627062 0.462460942503629 0.08556517005221087 0.9043422654818039 682.7046072918843 0.03321364189288594 0.02229680842571639 96.24867578593842 -1.9833947630863464 0.20007485894249044 AS(ph)S(ph)HSSQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 AS(0.486)S(0.486)HS(0.486)S(0.486)QT(0.055)QGGGSVTK 52.112 0.085788 50147000.0 33497.0 17719.0 16758.0 18183.0 14512.0 25508.0 19984.0 25070.0 35684.0 23914.0 True False 33316.65587386656 18308.766203638304 19117.380736852818 20484.965935655 16360.017180637058 23744.691999373274 19017.297573706473 26940.85070288052 26890.156341102364 22387.788046194553 1.488162019629701 0.8178014802471923 0.8539200343243541 0.9150062477537618 0.7307563010191135 1.0606091120024412 0.8494495987931693 1.2033725997088798 1.2011082240736648 1.0 14.45042437391113 1.7152581108436045 9.077381665447238 1.1490570989980733 0.9434034324084277 0.12933778743573188 0.20427132056123232 0.18833295982740694 39.06733070531392 0.09426069609672377 0.05052305648852097 51.910846494264085 -1.7152581108436045 -0.20565366658964557 AS(ph)SDGPAGEEPVAGQEALTLGLWSGPLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSDGPAGEEPVAGQEALTLGLWSGPLPR 29 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 AS(0.5)S(0.5)DGPAGEEPVAGQEALTLGLWSGPLPR 69.782 0.005266300000000001 14762000.0 13812.0 17577.0 12971.0 17049.0 14161.0 16950.0 16341.0 15015.0 20468.0 16826.0 True False 13737.637726657458 18162.03981947913 14797.20405404689 19207.401651926637 15964.319411177055 15778.286396008198 15550.523401317934 16135.495544625104 15423.93565714839 15752.150274536654 0.8721119013741473 1.15298797325709 0.9393767705458325 1.2193510928457427 1.0134692174047737 1.0016592097596855 0.9872000412829575 1.024336059738341 0.9791638213407078 1.0 13.943261159188417 3.0218035301152413 24.999955488712782 1.0016922184113008 1.054791724750126 0.05239378692223651 0.09200433603299564 651.8596021472283 747417.6823733923 0.0246570943901837 0.029468669109812932 1051.4860858632005 -3.0218035301152413 0.0530995063388251 AS(ph)SHSSQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.597)S(0.389)HS(0.012)S(0.002)QTQGGGSVTK;AS(0.25)S(0.25)HS(0.25)S(0.25)QT(0.002)QGGGSVTK;AS(0.418)S(0.418)HS(0.082)S(0.082)QT(0.001)QGGGSVTK;AS(0.245)S(0.245)HS(0.245)S(0.245)QT(0.021)QGGGS(0.001)VTK;AS(0.401)S(0.401)HS(0.099)S(0.099)QTQGGGSVTK;AS(0.247)S(0.247)HS(0.247)S(0.247)QT(0.011)QGGGSVTK 222.92 5.9272e-15 4952011000.0 1164849.0 1319270.0 1178494.0 1257760.0 1105152.0 1342317.0 991236.0 1210550.0 1520046.0 1537358.0 True False 1158577.5824108913 1363181.104434444 1344415.7115465226 1416992.2870389612 1245886.5564508962 1249525.7852643393 943286.1277907579 1300887.3880483448 1145451.0308728642 1439242.4962415984 0.8049912265906347 0.9471517885236302 0.9341134069187756 0.984540333362348 0.8656543700622883 0.8681829424348707 0.6554045827954855 0.903869494852639 0.7958707680353145 1.0 20.456878259839346 2.891017292518544 3.043866107583431 0.8282985258165867 0.9207643898394632 0.1038477052021185 0.09307429108544797 0.4573281871175552 8.11470357380493 0.028619562341463064 0.031126398788637946 778.0675311233816 -2.891017292518544 0.09246586402287649 AS(ph)SHSSQTQGGGSVTKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.581)S(0.418)HS(0.002)SQTQGGGSVTKK 228.15 7.172500000000002e-16 213810000.0 274810.0 344040.0 313470.0 345220.0 280300.0 380900.0 303660.0 334190.0 511170.0 468720.0 True False 273330.4534942611 355491.1634234286 357603.851269916 388924.81660379557 315994.54353173723 354569.279542155 288970.80570615066 359128.9547824348 385199.00282707345 438805.8883086188 0.6228960476073275 0.8101330745439002 0.8149477042076696 0.8863254276347788 0.7201237539216737 0.8080321823137913 0.6585390337855109 0.8184232808878216 0.8778346259477657 1.0 18.743223359741833 1.0341668238596247 2.1171134140438284 0.9972651056864382 0.7684891056208193 0.4970400803199374 0.07504353461342049 0.25047346136797694 2.356337014090379 0.0691620210062973 0.019270662527507667 10.818494381335844 -1.0341668238596247 -0.22877600006561893 AS(ph)SPAQCVTPVQTVV ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 1 AS(0.612)S(0.388)PAQCVTPVQTVV 149.23 3.5605e-06 102220000.0 224250.0 260120.0 240320.0 239400.0 245240.0 252780.0 267900.0 251520.0 282990.0 285990.0 True False 223042.66291651744 268777.9369541397 274154.96710111387 269708.01545376494 276469.8603486375 235305.91358011513 254940.65352261608 270289.6995926812 213250.9063717227 267737.8733516426 0.8330635487777137 1.0038846338378549 1.0239678222178272 1.0073584737096004 1.0326139402232664 0.8788667461740393 0.9522024296793498 1.0095310618893543 0.7964913730813213 1.0 18.030461706922544 2.746498993855378 24.765666115556538 0.9368558957222407 0.9854375615435543 0.09558973014496741 0.07766477348917591 1438.277889740264 4487052.168544273 0.023714746187150786 0.024755728649383982 557.8263098047443 -2.746498993855378 0.048581665821313624 AS(ph)SPCPEFEQFQIVPAVETPYLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPCPEFEQFQIVPAVETPYLAR 24 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 AS(0.5)S(0.5)PCPEFEQFQIVPAVETPYLAR 104.41 0.0019674 57839000.0 79043.0 81022.0 71382.0 81007.0 75953.0 91302.0 79924.0 75562.0 91356.0 90005.0 True False 78617.4412705028 83718.76829116668 81431.96513653346 91262.4778941652 85625.16434129872 84990.5076417899 76057.77078067038 81200.82013606143 68842.53790768271 84260.80384284278 0.9330250565510201 0.9935671685177954 0.9664275846265902 1.083095267692692 1.0161921134885046 1.0086600621601962 0.9026471065066967 0.9636843755669764 0.8170173410175731 1.0 16.36257405873648 2.244541569195964 24.9204763118564 0.9221843510221078 1.002826551020516 0.3188257714297834 0.05670797100885133 161.67992389981453 673663.8041418422 0.019537840856704996 0.015947120437366437 175.60689711256575 -2.244541569195964 0.08064219999840827 AS(ph)SPFRR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPFRR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 AS(0.724)S(0.276)PFRR 104.2 0.0050255000000000005 2656700000.0 741960.0 1060700.0 875670.0 907460.0 978750.0 917350.0 1009500.0 973710.0 1129800.0 1090400.0 True False 737965.3697995058 1096004.7582933092 998956.7245399161 1022344.3429560298 1103388.0109942472 853935.7537096242 960666.6283355035 1046373.1845991956 851375.9285443752 1020809.7384615941 0.7229215611830394 1.073662130168387 0.9785924711547017 1.0015033207821356 1.08089487141561 0.8365278283850853 0.9410829385143514 1.0250423219669973 0.8340201865897525 1.0 19.96128256682646 4.753008387025198 24.446826624115534 0.9760507895472709 0.7229213217494144 0.46710757107999745 0.08062902090103004 1650.3462226495233 2792457.461095572 0.018581802509810428 0.3962239447519559 56625.022426593874 -4.753008387025198 -0.2531294677978565 AS(ph)SPGHPAFLEDGSPS(ph)PVLAFAAS(ph)PRPNHSYIFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPGHPAFLEDGSPSPVLAFAASPRPNHSYIFK 34 1 Q9C073;D6RJ87;Q9C073-2 Q9C073 FAM117A Protein FAM117A 3 AS(0.767)S(0.233)PGHPAFLEDGS(0.001)PS(0.999)PVLAFAAS(0.973)PRPNHS(0.023)Y(0.004)IFK 142.24 1.2661e-09 143050000.0 67681.0 65068.0 55381.0 63021.0 42793.0 87083.0 70453.0 79121.0 106890.0 78973.0 True False 67316.61301606605 67233.74904556335 63178.16341971864 70999.45213831129 48242.43489601722 81063.15718133215 67044.91923340384 85025.4107882971 80548.39175261829 73932.8755278131 0.9105098717652602 0.9093890717164169 0.8545341023013693 0.9603231530146792 0.6525166855963652 1.0964426393889777 0.9068350007322784 1.1500352202087833 1.089480034119821 1.0 16.173928405818543 2.68580755823654 24.999572104766585 1.0535400242802082 0.865891898323514 0.4879940423130851 0.09761692932304883 281.8175099048079 133552.3941535141 0.03051434344668937 0.02876921633529522 485.07350989499173 -2.68580755823654 -0.18764812595669422 AS(ph)SPPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPPDR 7 0 Q9NWB6;Q9NWB6-2 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 1 AS(0.705)S(0.295)PPDR 97.431 0.01259 427940000.0 1037600.0 979760.0 986850.0 928870.0 935790.0 665950.0 900530.0 921830.0 1054500.0 991490.0 True False 1032013.6768881966 1012370.719322572 1125789.9021460328 1046464.846760813 1054957.309638118 619914.443977679 856967.9235413283 990621.6355578916 794632.6045760687 928212.2593427051 1.111829397318019 1.0906672575510499 1.2128582560881476 1.1273982176251864 1.1365474857929205 0.6678584965217536 0.9232456422717072 1.0672361042283371 0.85608932286541 1.0 19.82409522643331 2.906028711723713 24.999999985204546 0.9200314850215179 1.137264211297494 0.5625086398886723 0.10216867259079805 45.42679429365032 12082.202733379296 0.03249727784289008 0.034468575752427635 805.4316874838792 -2.906028711723713 0.21723272627597612 AS(ph)SPPDRIDIFGR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASSPPDRIDIFGR 13 1 Q9NWB6;Q9NWB6-2 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 1 AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR 218.63 1.4422e-11 17989450000.0 1370582.0 1996150.0 1750740.0 2015050.0 1876440.0 1841140.0 1975170.0 1641430.0 2404490.0 1926550.0 True False 1363202.9387979761 2062590.6460518425 1997228.974295125 2270155.123392269 2115393.5114687583 1713866.3253773765 1879623.4812178654 1763921.8416126512 1811935.6580152784 1803595.9295975647 0.7558250251219777 1.1435990801509888 1.1073594376212446 1.2586827715334261 1.172875518709318 0.9502496081590683 1.0421533173659716 0.9780027846959236 1.0046239450205317 1.0 20.782444728504043 2.72986499314235 24.692890630490787 0.9962958837999107 1.1013703781444546 0.11642475831558896 0.12478853488097046 1106.6696827351464 3142593.959742008 0.040480503186883426 0.03870573334990946 536.8648780460196 -2.72986499314235 0.10507449434454386 AS(ph)SPVEELLTMEDEGNSDMLVVTTK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSPVEELLTMEDEGNSDMLVVTTK 25 0 B8ZZD4;Q86VP1-2;Q86VP1 B8ZZD4 TAX1BP1 Tax1-binding protein 1 1 AS(0.5)S(0.5)PVEELLTMEDEGNSDMLVVTTK;AS(0.499)S(0.499)PVEELLT(0.002)MEDEGNSDMLVVTTK;AS(0.493)S(0.493)PVEELLT(0.014)MEDEGNSDMLVVTTK;AS(0.5)S(0.5)PVEELLT(0.001)MEDEGNSDMLVVTTK 100.64 0.0038725 140092000.0 64549.0 59551.1 53552.1 55595.0 55342.0 60613.0 55715.6 58400.3 65844.4 55388.5 True False 64201.47535606808 61533.22236409986 61091.77019680244 62633.32129971622 62389.47566226683 56422.96597765454 53020.42357373901 62758.42693671458 49617.92988975681 51853.558509519404 1.2381305584703857 1.186673087302262 1.1781596471452787 1.20788858277138 1.2031860002590413 1.088121386448266 1.0225030855694386 1.2103012549311005 0.9568857242584002 1.0 15.66215537857589 2.0489065972697733 0.3671375773322157 0.9883287939008906 1.2366510265534212 0.5724901202196218 0.06381777642308133 1.0477386001219295 0.3697142354165601 0.0792391933987094 0.08985741965231563 111.91971543853609 -2.0489065972697733 0.24832223265253062 AS(ph)TDNEELLQFPLELCSDSLPSHPFPPAK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASTDNEELLQFPLELCSDSLPSHPFPPAK 29 0 Q86YS7;Q86YS7-5;H0YFC4;Q86YS7-3;Q86YS7-2;Q86YS7-4 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 1 AS(0.5)T(0.5)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.973)T(0.027)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.986)T(0.014)DNEELLQFPLELCSDSLPSHPFPPAK 276.45 2.2758e-71 392831000.0 318538.0 325020.0 292719.0 289436.0 285709.0 430635.0 416376.0 378693.0 502759.0 411976.0 True False 316823.0268008992 335838.09422126063 333931.29084084136 326078.5679234584 322092.34762008255 400866.2160557515 396234.30216921534 406952.99462408974 378860.7810754481 385683.3389696017 0.8214589399877347 0.8707612185646688 0.8658172575796973 0.8454567127390453 0.835121238269172 1.0393661731064467 1.0273565439145018 1.0551479763458602 0.9823104676692 1.0 18.557057299156135 2.738032328186289 24.999800449583834 1.0273026851553846 0.8498822893266764 0.9322733494716949 0.02329344101255253 10.760030251032319 509177.52307564416 0.007241107013518115 0.007223028818507167 547.056683402498 -2.738032328186289 -0.17742039582870817 AS(ph)WESLDEEWR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASWESLDEEWR 11 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 AS(0.986)WES(0.014)LDEEWR;AS(0.931)WES(0.069)LDEEWR;AS(0.999)WES(0.001)LDEEWR;AS(0.989)WES(0.011)LDEEWR;AS(1)WESLDEEWR 293.31 1.7262999999999999e-35 1808636000.0 2145990.0 2138430.0 1958080.0 2179100.0 2090950.0 2387390.0 2412740.0 2117510.0 2298760.0 2491650.0 True False 2134436.2282819008 2209606.349841765 2233760.6440635375 2454973.836571845 2357220.0884683733 2222355.3486115644 2296026.5486381375 2275529.3486979073 1732261.3998058653 2332630.763791114 0.9150339013847621 0.9472593708961451 0.9576143291676015 1.0524485377968233 1.0105414560499473 0.952724873181247 0.9843077542656234 0.9755205941807942 0.7426213469767083 1.0 21.153526527993957 -0.6968628558907106 5.033208568879009 1.0000000118863646 0.9569463382048977 0.028015878081724233 0.07803250313198358 1.0385107076710226e-08 2.6062957454168924e-09 0.07336132011782662 0.01729142408178613 0.20097273561394696 0.6968628558907106 -0.04305367368146684 AS(ph)WESLDEEWRAPQAGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 AS(0.999)WES(0.001)LDEEWRAPQAGSR 177.32 1.9575e-14 0.0 27695.0 39219.0 36288.0 34112.0 35981.0 44570.0 48203.0 35565.0 46128.0 42201.0 True False 27545.89319720375 40524.380706613854 41397.03497904967 38430.57570241786 40562.96707390447 41488.98080649467 45871.23673665796 38219.040895410704 34760.37248353239 39507.69604990619 0.6972285390271235 1.0257338381722738 1.04782204780448 0.9727364423851061 1.0267105179371951 1.0501493368301134 1.1610709133408674 0.967382174023318 0.8798380052236664 1.0 15.269846095409656 4.739274432342048 24.802251473371264 1.0191708869337246 0.6972284308848498 0.6598501159745451 0.0682901851098129 32.30771279816556 1122320.6451422155 0.01663563315298717 0.09979734386890761 54862.353271654014 -4.739274432342048 -0.32194245604887484 ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK 32 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;; 259.15 2.8195999999999993e-59 3048560000.0 257276.0 269476.0 261953.0 277522.0 279441.0 353349.0 349980.0 311352.0 373790.0 343522.0 False True 255890.854602051 278445.34575831826 298833.70546370704 312656.25674502796 315026.1549734285 328922.81532407674 333050.13034656685 334586.66725342075 281674.46302938706 321598.13185601943 0.7956851401009201 0.8658176717362872 0.9292146808784819 0.9721955004546022 0.9795646297922738 1.022775889355404 1.035609654895864 1.04038747153922 0.875858517597029 1.0 18.29489950045028 4.397240004665407 0.972055032522445 1.003047721934867 0.7460959142052548 0.6837601704969289 0.044086895354079 0.6674724798282341 0.7281416204436036 0.014509305814087723 0.1606578370933571 24959.736987289427 -4.397240004665407 -0.25695180772961224 ASAGTPSLSAGVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASAGTPSLSAGVSPK 15 0 Q8TEK3;Q8TEK3-1 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific 1 ASAGTPSLSAGVS(1)PK;ASAGTPSLSAGVS(1)PK 210.86 1.7519e-09 341330000.0 526820.0 448640.0 400500.0 352200.0 366350.0 593900.0 559560.0 511930.0 873810.0 581940.0 True False 523983.659655205 463572.7111913934 456886.91879159526 396788.48388812004 413002.50097342767 552845.0908902222 532491.9450732177 550132.8161278674 658471.2339541153 544800.0909760997 0.961790697788617 0.8509042470254107 0.8386322365934384 0.728319415617585 0.7580808223314817 1.014766884307432 0.9774079591638285 1.0097884072343184 1.2086474375845917 1.0 19.055367418702282 2.6650877722415425 6.073427044625098 1.0364061092185173 0.8242404630404869 0.6253934111780972 0.08301272384965967 0.16489863774787084 10.770499054670388 0.02827317498745684 0.02667845686751437 462.4744794599997 -2.6650877722415425 -0.21216564617803035 ASALLFS(ph)SDEEDQWNIPASQTHLASDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 AS(0.001)ALLFS(0.536)S(0.463)DEEDQWNIPASQTHLASDSR 118.23 0.00012324 79481000.0 23234.0 34151.0 29758.0 30152.0 41678.0 33497.0 31431.0 38543.0 37529.0 28503.0 True False 23108.910725540078 35287.695390284534 33947.66773882719 33969.24010844579 46985.44625513996 31181.43123345642 29910.56245191994 41419.27437738831 28280.480812835765 26683.914137353982 0.8660240250582515 1.3224332535565457 1.2722146969924817 1.273023137969602 1.76081537413458 1.1685478776821014 1.1209211024273638 1.5522188448135783 1.059832551823677 1.0 14.703682683717025 4.739360552665042 24.021934123868203 1.3125456086884635 0.866023812985844 0.23318862942683982 0.21924401140389166 50.43260518757103 1513997.3882118945 0.04973192788981048 0.2990294541454992 54873.233520587964 -4.739360552665042 -0.4465217957026195 ASALLFSS(ph)DEEDQWNIPASQTHLASDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 ASALLFS(0.064)S(0.936)DEEDQWNIPASQTHLASDSR;ASALLFS(0.166)S(0.834)DEEDQWNIPASQTHLASDSR;ASALLFS(0.127)S(0.873)DEEDQWNIPASQTHLASDSR;ASALLFS(0.156)S(0.844)DEEDQWNIPASQTHLASDSR;ASALLFS(0.179)S(0.821)DEEDQWNIPASQTHLASDSR 295.2 1.7717999999999993e-71 4580004000.0 586781.0 729948.0 686177.0 718634.0 746727.0 733852.0 765813.0 710589.0 731643.0 826851.0 True False 583621.8362934985 754243.8779171151 782784.7572425985 809612.9907167965 841818.2572523138 683122.5385417942 728767.6995002436 763616.7594778291 551339.386163915 774080.6612772433 0.7539548079272705 0.9743737515320468 1.0112444302005856 1.0459026187024545 1.0875071544395678 0.8824952911426995 0.9414622221639891 0.9864821557715334 0.7122505621755203 1.0 19.562124381325162 -0.6191391354477305 7.631494642931874 0.9999889765904895 0.9463039153016424 0.018025120292847308 0.11504428169147957 0.0 0.0 0.1082427862727618 0.025513069395998678 0.24035926347685538 0.6191391354477305 -0.05368506128884709 ASAPERT(ph)PS(ph)PAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASAPERTPSPAPK 13 1 Q96P11-2;Q63ZY6;Q63ZY6-6;Q3KNT7-3 Q96P11-2 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 2 AS(0.01)APERT(0.99)PS(1)PAPK;AS(0.011)APERT(0.989)PS(1)PAPK 92.264 0.014099 818070000.0 1514030.0 1363020.0 1132520.0 1164340.0 1135160.0 1606980.0 1505290.0 1421350.0 1950920.0 1647590.0 True False 1505878.630704545 1408387.296737012 1291968.971959694 1311745.324617531 1279715.897379544 1495893.2550240254 1432473.3719337771 1527418.3544690583 1470141.9069886631 1542439.3956272353 0.9762967899897144 0.9130908486451678 0.8376140907852739 0.8504355687077791 0.8296701322641891 0.9698230343862024 0.9287064217853822 0.9902615031742829 0.953127825415032 1.0 20.556782374520125 2.7179997257833755 24.665748208486495 0.9663594405442367 0.8790257117861464 0.49945297718565806 0.04347206861586868 615.2473967925991 738076.9981297434 0.014826897160609491 0.01399466887782539 522.395859154555 -2.7179997257833755 -0.08733372875809031 ASAPS(ph)PNAQVACDHCLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASAPSPNAQVACDHCLK 17 0 Q14258;A0A3B3IUA7 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 ASAPS(1)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK 309.59 2.8604e-58 5017500000.0 3947300.0 3373830.0 3358380.0 2760700.0 2735580.0 3784860.0 3127370.0 2991030.0 4645270.0 3514070.0 True False 3926048.1753862593 3486125.892026694 3831210.7124377484 3110204.3369390494 3083939.8979470152 3523221.536802099 2976087.165386427 3214235.8467425955 3500505.4519289522 3289799.044053309 1.193400606788747 1.0596774591226987 1.164572869386385 0.9454086086386043 0.9374250088380298 1.0709534198360013 0.9046410207839435 0.9770310598614518 1.0640484130045935 1.0 21.649568029575782 3.7390921800880084 24.99999353479224 0.981016929145789 1.1312630315063115 0.5880669245737273 0.0586989394673548 32.201753139588185 1514463.3927604475 0.014744139183651086 0.024665819740453534 5483.933504265621 -3.7390921800880084 0.1502461023605225 ASAS(ph)PDRIPSLPQETVDQEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASASPDRIPSLPQETVDQEPK 21 1 A0A494C1R1;A0A2R8Y5U1;Q76L82;Q8IXJ9 A0A494C1R1 ASXH1;ASXL1 Putative Polycomb group protein ASXL1 1 AS(0.097)AS(0.903)PDRIPSLPQETVDQEPK;AS(0.003)AS(0.997)PDRIPSLPQETVDQEPK 182.4 2.8368e-17 315900000.0 257040.0 225848.0 208155.0 203237.0 200460.0 259420.0 260560.0 228780.0 359220.0 265550.0 True False 255656.1251998284 233365.2141520009 237461.41468430567 228966.78336164102 225987.39278049237 241486.90600899368 247955.7173641393 245852.72532130056 270695.04430138966 248602.3716512071 1.0283736373944083 0.9387087202829096 0.9551856368348233 0.9210160862137103 0.9090315240337132 0.971378126463747 0.9973988410377072 0.9889395812612587 1.0888675055810768 1.0 17.923480534114073 1.82598382915764 1.4783196316683405 1.036814096303562 0.9497629900088809 0.42929105399332146 0.038435656365514145 0.3616944537549959 1.4939470053824475 0.028485103740000416 0.011862992740180869 66.98596669012571 -1.82598382915764 -0.08705110629468105 ASAVSELS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 13 ASAVSELSPR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVS(0.005)ELS(0.995)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR 186.27 1.4246e-06 97541243000.0 11381104.0 14449337.0 13121159.0 13645392.0 12995574.0 12730090.0 13121268.0 11639035.0 14319912.0 12214957.0 True False 11319829.40062353 14930274.447236339 14968504.136041468 15372897.228106452 14650483.318098143 11850088.84170855 12486542.138728598 12507598.893522197 10790961.56458995 11435387.986509187 0.9898946510584524 1.305620278459307 1.3089633822394524 1.344326685394716 1.281153148050765 1.036264694795542 1.0919211620506013 1.0937625298134128 0.9436463001798019 1.0 23.4470019793898 2.7367510155732337 24.863809059351727 1.0482817778935931 1.2582658254432018 0.521590112813594 0.1010757624698104 125.47476302223302 1724000.1777913761 0.03213828498478546 0.03172519020718938 545.445063509737 -2.7367510155732337 0.20998404754960864 ASDADRPCR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDADRPCR 9 1 Q86U44;H0YFV6;Q86U44-2 Q86U44 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 0 67.563 0.055219 134870000.0 116100.0 134390.0 129670.0 120640.0 132610.0 109890.0 124170.0 106620.0 140340.0 150210.0 False True 115474.9304999225 138863.08990952946 147926.40888815525 135913.011630502 149497.09745894972 102293.56295323538 118163.42272453624 114576.52580538976 105755.08745965452 140623.46919874908 0.8211640002759206 0.9874816110052611 1.0519325808914912 0.966503048210327 1.0631020434267566 0.7274288106820888 0.8402823753233601 0.8147752751246232 0.7520443640185437 1.0 17.101477865938797 2.740288611723537 24.999848234702593 0.8167196794110723 0.9820259494199677 0.402392844839929 0.09160458004457206 140.86230636682046 2037940.3586129015 0.02725976759615894 0.027574004821757182 549.9061942966609 -2.740288611723537 0.16530627000889542 ASDGSLLYNAGNICNHFFTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASDGSLLYNAGNICNHFFTR 20 0 Q3KQV9;Q3KQV9-2 Q3KQV9 UAP1L1 UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 0 ; 266.45 9.6241e-37 517720000.0 339050.0 416590.0 356000.0 379500.0 363480.0 419840.0 395950.0 345000.0 436160.0 394150.0 False True 337224.5924719965 430455.9463160266 406121.70559252915 427544.6610889879 409767.0234852504 390817.4489970552 376796.38582411344 370745.6518745024 328674.212244569 368995.009551208 0.9139001442923241 1.1665630568813676 1.100615713167711 1.1586732883162598 1.1104947570527623 1.0591402021192342 1.0211422270517803 1.0047443523028228 0.8907280687733978 1.0 18.493241779220018 1.9559673670932574 1.4203588225125743 0.9534639886109202 1.0969603687394058 0.37133949082610174 0.0711059812745537 0.40997434473957217 1.5374336376911408 0.048455067265836475 0.02216085981220418 90.35815760114876 -1.9559673670932574 0.14349638012848565 ASDPHLGT(ph)PSPEDCELETYDMFPDTIHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDPHLGTPSPEDCELETYDMFPDTIHSR 29 0 Q12851;Q12851-2;C9JCU6 Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 1 ASDPHLGT(0.5)PS(0.5)PEDCELETYDMFPDTIHSR 138.11 3.7499e-06 84430000.0 11977.0 22342.0 15972.0 12623.0 13584.0 20928.0 16835.0 15301.0 21642.0 24537.0 True False 11912.517162769795 23085.63996397581 18220.718768887273 14221.07050573465 15313.841881323991 19481.296619212953 16020.626734054676 16442.838316903664 16308.619087942428 22971.0276528174 0.5185887781258547 1.00498942898379 0.7932043374059714 0.6190872572473018 0.6666589807289596 0.8480811966121842 0.6974275150502353 0.7158076933004321 0.7099647144407217 1.0 14.487527779428529 -1.2613727185902126 6.815214605016159 1.000002443515834 0.7358086503469721 0.2939257717400584 0.1250954728521817 4.39635460139301e-06 4.76279286926503e-07 0.11464721253396364 0.02702235712608181 0.054780662656413744 1.2613727185902126 -0.2641937931688618 ASDPHLGTPS(ph)PEDCELETYDMFPDTIHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDPHLGTPSPEDCELETYDMFPDTIHSR 29 0 Q12851;Q12851-2;C9JCU6 Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 1 ASDPHLGT(0.005)PS(0.995)PEDCELETYDMFPDTIHSR 156.67 1.1101e-08 79748000.0 11533.0 13988.0 10807.0 10508.0 10940.0 11573.0 10417.0 10928.0 14104.0 11031.0 True False 11470.907609436752 14453.582124075434 12328.531663872083 11838.311722590492 12333.14415353979 10772.985749911675 9913.08991319558 11743.502851259609 10628.258183917384 10326.992135885755 1.1107694727079291 1.3995926339335532 1.1938163118214338 1.1463465418408696 1.1942629558787754 1.043187174751118 0.9599203507426052 1.1371658559176736 1.0291726810737798 1.0 13.334132492170975 3.113248324752249 1.2327056562281695 1.0426583955685202 1.2473066187458222 0.511421294419068 0.08398430257898933 0.36374159010753415 1.1709589210775109 0.0325237439686868 0.04401461987004343 1297.9211957490154 -3.113248324752249 0.2046482231773019 ASDPQS(ph)PPQVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDPQSPPQVSR 12 0 Q7L7X3-3;Q7L7X3;Q7L7X3-2 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 ASDPQS(1)PPQVSR 125.84 0.00021141 0.0 155610.0 160430.0 150080.0 152210.0 184220.0 211420.0 166240.0 146590.0 176340.0 187010.0 True False 154772.2130498962 165769.8155680172 171209.95948125474 171479.77039355692 207679.3250425136 196805.0330291478 158198.33610152936 157529.29016893744 132883.36983493992 175074.86169268403 0.8840344727592824 0.9468510439779735 0.9779242880784706 0.9794654054593073 1.1862315528031746 1.1241193117410975 0.9036039473172413 0.8997824624614296 0.7590088522714098 1.0 17.41761242220093 2.0729526798461673 9.798935086290046 0.881743132223296 1.0175174515359056 0.2864976915115688 0.09748456653516813 0.4706379454876761 59.43584435810464 0.03902459378542265 0.028808796259753997 118.29126601001816 -2.0729526798461673 0.13577431931260953 ASDSELER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDSELER 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 153.78 0.0010134 89198000.0 161060.0 178710.0 156770.0 167930.0 155630.0 178090.0 167290.0 162890.0 171690.0 167750.0 False True 160192.87085544816 184658.25431752385 178841.85333073235 189189.9207817493 175448.55800872023 165779.05747876683 159197.54359013977 175045.67893866033 129379.30002813226 157044.05138199942 1.0200505491659115 1.1758373061094474 1.138800557912959 1.2046933272343894 1.1171932745287692 1.0556213751485568 1.0137126633526674 1.114627885604359 0.8238408197546149 1.0 17.260809771108793 1.8367422942674299 0.9172207299955943 0.9487429838183689 1.1349429272630265 0.44013222195283497 0.07830985535901422 0.5302418676362235 0.8277135288294833 0.06628938249706448 0.029220804710983823 68.66608618380742 -1.8367422942674299 0.18619994344465762 ASDSQEDQEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDSQEDQEKR 11 1 Q6ISB3;Q6ISB3-2 Q6ISB3 GRHL2 Grainyhead-like protein 2 homolog 0 77.597 0.051601 75992000.0 116500.0 103110.0 87930.0 95899.0 94849.0 110510.0 118600.0 119240.0 162520.0 125040.0 False True 115872.77694436691 106541.95401868876 100309.77969873886 108039.80356725393 106927.45793593202 102870.7038125583 112862.86490400249 128138.29428845132 122469.12365642734 117059.84014787017 0.9898593471338781 0.9101494917821927 0.8569102740276032 0.9229450803177066 0.9134427127259108 0.8787873252057399 0.9641467540143054 1.094639238585896 1.0462095583055995 1.0 16.83688668813355 1.9497699794022738 4.733528251402164 1.0535012505834316 0.9104319814354863 0.7064790563606751 0.03879084428388419 0.10423770178628762 4.977441779605844 0.017264669526860843 0.010444509022114586 89.07790191899784 -1.9497699794022738 -0.14306926914794527 ASDSSS(ph)PSCSSGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASDSSSPSCSSGPR 14 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 ASDSS(0.024)S(0.973)PS(0.002)CSSGPR 118.52 0.00025231 118850000.0 114680.0 120750.0 125350.0 124070.0 124720.0 141670.0 145780.0 118210.0 162870.0 139400.0 True False 114062.5756221458 124769.09075508363 142998.1904382683 139777.24927881645 140602.35272664388 131876.68635530872 138728.06446631954 127031.43045821723 122732.87084618708 130503.37265365564 0.8740201368194349 0.9560602781217749 1.0957432557530355 1.0710623521567741 1.0773848205424548 1.010523204678378 1.063022829566953 0.9733957665243439 0.9404574636696112 1.0 16.99372756588967 4.486743835607366 4.731788348335105 1.0295822789465126 0.8882548000803766 0.5171261681124415 0.04711037572550965 0.14739810082413862 8.803493642506787 0.012361601733001736 0.045455501831195184 30672.122892737112 -4.486743835607366 -0.14132747886613595 ASDVHEVR ddPTM_BT-474_Trastuzumab_2h_R1 10 ASDVHEVR 8 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;; 163.15 0.00033757 19013621000.0 21271590.0 27296390.0 24940860.0 25957460.0 24969370.0 27019740.0 28072560.0 23583920.0 27710340.0 28000200.0 False True 21157066.12293581 28204933.840133805 28452316.29815869 29243671.774521682 28149071.264448963 25151928.97142644 26714583.025206625 25343871.86711922 20881498.00653241 26213203.263822727 0.8071148691749178 1.075981960551151 1.0854192832444176 1.1156084771555317 1.0738508751159748 0.9595137503144848 1.0191269932307685 0.9668361249880786 0.7966022998551767 1.0 24.643790326556076 1.5255906371757724 3.9367986718596675 0.8931712326457772 1.0269803175054393 0.19870020287692602 0.0949749834014514 0.25667940383667676 8.696485811192922 0.05986784194664831 0.024284254423776717 33.542129950774076 -1.5255906371757724 0.13380908485966203 ASDVHEVRK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASDVHEVRK 9 1 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;; 145.9 6.2357e-05 842490000.0 1953800.0 2332760.0 2170100.0 2124760.0 2023820.0 2438340.0 2585450.0 2133800.0 3161220.0 2612170.0 False True 1943280.9578875857 2410404.5064168014 2475631.217152663 2393754.398143451 2281541.4808790595 2269783.2950349622 2460381.9061218705 2293034.9912168523 2382179.689177774 2445459.0742087495 0.7946487342121445 0.9856654449213016 1.0123380281690775 0.9788568630689403 0.9329706250010636 0.9281624538204023 1.0061022619722022 0.9376705647624811 0.9741237194691348 1.0 21.2216738900906 4.74174135526454 24.797489711474142 0.969803756640709 0.7946486614325906 0.7700019690916277 0.029178749215163363 130.93956101144948 1020769.0198364808 0.0071282736859209885 0.05120679736254259 55174.87466133361 -4.74174135526454 -0.17515509520811834 ASEAGEVPFNHEILR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASEAGEVPFNHEILR 15 0 Q7L5N1;E7EM64 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 0 ; 152.34 2.8471e-06 2021610000.0 1266360.0 1685860.0 1562950.0 1610540.0 1528330.0 1649750.0 1623050.0 1426750.0 1808620.0 1595190.0 False True 1259542.0584658233 1741972.830976108 1782999.7745950671 1814434.1988676128 1722953.7663783766 1535706.6655937778 1544536.8708468913 1533221.3298897014 1362909.8352663524 1493383.608489133 0.8434149479785111 1.1664603930790929 1.1939328679246326 1.2149819969587647 1.1537248410818581 1.0283403787640761 1.0342532635733899 1.0266761474909134 0.9126321110790938 1.0 20.510153370415164 2.6082927125704627 3.9729761415792524 1.0030894642223798 1.1270937790800257 0.23492951911803261 0.10238359825299138 0.353858658907827 9.632679797445746 0.0349732893997139 0.03262676953935551 405.7819385434491 -2.6082927125704627 0.12400431485764596 ASEAHCHYVVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASEAHCHYVVVK 12 0 Q15067-2;Q15067;Q15067-3;K7ESC7 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 ; 75.78 0.019019 340240000.0 292850.0 378500.0 361270.0 368380.0 392950.0 418450.0 422420.0 175638.0 479420.0 329550.0 False True 291273.32813869393 391098.1436919185 412133.6757848675 415016.8702291479 442989.85330287577 389523.5364253471 401985.93079889345 188744.99943169273 361273.3648988704 308517.83685805026 0.9441053104255669 1.267667852448556 1.3358504000353506 1.3451957087981856 1.435864641779841 1.2625640721206266 1.3029584768670865 0.611779861267907 1.1709966871869812 1.0 18.23499437516568 1.7663584479532513 24.999999999999122 0.8917555960723659 1.281914145092707 0.43571791330166165 0.17715201741269282 15.388380035579008 13847.864322783566 0.0792268019563019 0.04394010729705835 58.3926853504544 -1.7663584479532513 0.3901585490203411 ASEDTTS(ph)GSPPKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASEDTTSGSPPKK 13 1 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7 Q9BZZ5-2 API5 Apoptosis inhibitor 5 1 ASEDT(0.009)T(0.062)S(0.574)GS(0.356)PPKK;ASEDTT(0.002)S(0.673)GS(0.326)PPKK 150.11 4.6698e-05 1389150000.0 486220.0 343040.0 287400.0 264880.0 274490.0 446020.0 456850.0 415820.0 704180.0 438240.0 True False 483602.24554412096 354457.87902794115 327863.4218744181 298413.7808412421 309444.6744703046 415187.6872181455 434750.420163521 446850.599891176 530644.274528569 410271.1480038594 1.1787381293981993 0.8639600438698332 0.7991383831634534 0.7273574617497475 0.7542442991077543 1.0119836338436352 1.059666082489016 1.0891592110858659 1.2933989560571713 1.0 18.646218175839262 2.4296467103145876 2.6848744161207185 1.1166415619198204 0.854289784058083 0.4174916855673977 0.13617076283811697 0.2679398666546424 3.9479982145968453 0.05362085726860613 0.044136569078476934 268.934618568924 -2.4296467103145876 -0.26235177786173747 ASEDTTSGS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASEDTTSGSPPK 12 0 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7 Q9BZZ5-2 API5 Apoptosis inhibitor 5 1 ASEDTTS(0.001)GS(0.999)PPK;ASEDTTSGS(1)PPK;ASEDT(0.004)T(0.013)S(0.08)GS(0.903)PPK;ASEDTTS(0.001)GS(0.999)PPK 250.81 2.4376e-17 1282310000.0 2301020.0 1830100.0 1602430.0 1498250.0 1482310.0 2180460.0 2193880.0 1988180.0 3184620.0 2159350.0 True False 2288631.5639873543 1891013.7721811892 1828038.215428754 1687928.2963809657 1671073.3921602904 2029729.932450738 2087753.6429645293 2136548.0873734755 2399813.072721706 2021538.4342874563 1.132123696077063 0.9354330049370176 0.9042807123640434 0.8349721517790087 0.8266344897614096 1.0040521110181955 1.0327548601372065 1.0568921427044533 1.1871221600432158 1.0 20.94702220228268 2.3051218049707165 2.3399953957105155 1.0781041994311442 0.9213239815128822 0.34992853925049827 0.09074863282137138 0.33049022192937777 3.712841189976694 0.04019681073884728 0.029366355294013925 201.8932526838591 -2.3051218049707165 -0.15678021791826202 ASEDTTSGS(ph)PPKK ddPTM_BT-474_Trastuzumab_2h_R1 10 ASEDTTSGSPPKK 13 1 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7 Q9BZZ5-2 API5 Apoptosis inhibitor 5 1 ASEDTT(0.006)S(0.009)GS(0.985)PPKK;ASEDTT(0.001)S(0.002)GS(0.997)PPKK;ASEDT(0.001)T(0.001)S(0.028)GS(0.97)PPKK;ASEDTT(0.001)S(0.007)GS(0.992)PPKK;ASEDTT(0.017)S(0.096)GS(0.887)PPKK;ASEDT(0.007)T(0.014)S(0.12)GS(0.859)PPKK;ASEDT(0.033)T(0.028)S(0.134)GS(0.805)PPKK;ASEDTTS(0.018)GS(0.982)PPKK;ASEDTTSGS(1)PPKK;ASEDTT(0.001)S(0.004)GS(0.995)PPKK 213.52 5.5406e-09 46184092000.0 6288246.0 4381770.0 3753352.0 3543361.0 3543369.0 5597330.0 5386736.0 4989569.0 8463876.0 5307560.0 True False 6254390.782225802 4527614.565614099 4281791.33687958 3991950.1392910075 3994596.0389565057 5210399.751797554 5126159.00035014 5361915.975298002 6378067.169927811 4968826.9767692685 1.2587258142549385 0.9112039092490103 0.861730818339664 0.8033989023877369 0.8039314022469328 1.0486176669378324 1.0316638160910905 1.079111025673975 1.2836162739711316 1.0 22.24447387492663 2.172004591115189 1.6866088803516293 1.1257778554862465 0.9209452856391349 0.243728938998096 0.14034026927549284 0.507957927761757 2.8215310382064276 0.08009361644928419 0.046367704629831266 148.5951350839709 -2.172004591115189 -0.20483256984711162 ASEEHLK ddPTM_BT-474_Trastuzumab_2h_R1 8 ASEEHLK 7 0 Q32Q12;P22392-2;J3KPD9;P22392;F6XY72 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 ;;;;;;; 116.54 0.0054322 19112410000.0 15261130.0 15962370.0 14251800.0 13433340.0 12779350.0 14456270.0 15758240.0 15004460.0 22439290.0 17032060.0 False True 15178965.771750942 16493667.835993556 16258329.561133714 15133999.466648608 14406724.473358182 13456942.081299206 14995953.728877325 16124168.996304076 16909427.650581084 15945059.34891979 0.9519541721103253 1.0344061740423018 1.0196468514389787 0.9491340944851279 0.903522787723846 0.8439568512619463 0.9404765075329266 1.011232924473023 1.06048069690795 1.0 23.92660613165012 1.6266518954398823 4.3884882049722265 1.031430919721107 0.9493893824074642 0.3036458253519352 0.05232432905120162 0.22761388304037783 9.935208915419343 0.03416614014700027 0.01564272426593652 42.33035351613446 -1.6266518954398823 -0.08204153731364272 ASEENLLSSSSVPSADRDSS(ph)PTTNSK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASEENLLSSSSVPSADRDSSPTTNSK 26 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 ASEENLLSSSSVPSADRDS(0.049)S(0.902)PT(0.049)TNSK;ASEENLLSSSSVPSADRDS(0.21)S(0.786)PT(0.003)T(0.001)NSK;ASEENLLSSSSVPSADRDS(0.188)S(0.808)PT(0.004)T(0.001)NSK;ASEENLLSSSSVPSADRDS(0.366)S(0.626)PT(0.007)T(0.001)NSK 308.06 6.8321e-82 5466600000.0 2171260.0 2022240.0 1918440.0 1779320.0 1747460.0 2409970.0 2576270.0 2283940.0 3061350.0 2527290.0 True False 2159570.177409665 2089549.0359301057 2188539.6766205933 2004581.7295622109 1969988.6729931133 2243374.4463591673 2451645.977792871 2454379.2004123237 2306921.312488335 2365996.1884781704 0.9127530246778292 0.8831582426487855 0.9249971269092708 0.8472463900508544 0.8326254634671357 0.9481733137542058 1.0362003073934754 1.0373555174621825 0.9750317112607723 1.0 21.17401631888181 2.461666316578807 4.277154389735687 1.01732574937527 0.8811662566202882 0.803667736043943 0.030684699452057783 0.0866603075201103 3.7938429090593413 0.01131711675621931 0.009735431511473306 289.5118313734169 -2.461666316578807 -0.13615949275498185 ASEKPVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASEKPVSPK 9 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 ASEKPVS(1)PK;ASEKPVS(1)PK 136.93 0.00010832 1707720000.0 3863400.0 2527650.0 2239660.0 2118440.0 2012090.0 3001910.0 3407530.0 2786470.0 5378090.0 2791460.0 True False 3842599.8836640953 2611781.3022533073 2554984.6605263003 2386634.286791456 2268317.7349082124 2794395.0274360436 3242694.7558712997 2994410.5408079624 4052731.7822138593 2613306.632910856 1.4703976315951792 0.9994163215910681 0.9776826907144864 0.9132622466629876 0.8679875933202778 1.0692947365015029 1.2408397526085158 1.1458320669674382 1.5508060673690198 1.0 21.31744498285528 2.294426522204479 4.500970656480725 1.236572282774896 1.0266802237208812 0.166255847700704 0.20036831737305386 0.3467531087524818 14.387998043400417 0.07215881075978046 0.05817031198140152 196.98199074049407 -2.294426522204479 -0.20989205905401476 ASEPLLS(ph)PPPFGESR ddPTM_BT-474_Trastuzumab_2h_R1 8 ASEPLLSPPPFGESR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR 235.88 1.135e-17 1955121000.0 642567.0 842898.0 753956.0 779335.0 754924.0 681892.0 666255.0 638683.0 778836.0 718069.0 True False 639107.4906679053 870953.3503874 860106.4512969685 877998.7310929825 851059.0966148877 634754.4110411105 634025.7003087368 686344.7686265594 586902.3036677174 672241.2216502004 0.9507115453274952 1.2955964649853011 1.2794610380863007 1.3060769003984816 1.2660025437382876 0.9442360727045743 0.9431520708479417 1.0209798901378555 0.8730531314741525 1.0 19.35861948546555 2.7364269804679417 24.990607449906282 0.9617467315034971 1.2319266653307857 0.6202454375330011 0.10273536554847645 123.77171573341282 1449691.19022075 0.03216449260167817 0.03171783179295569 545.038248694881 -2.7364269804679417 0.27017993382728855 ASESSKPWPDATYGTGSASR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASESSKPWPDATYGTGSASR 20 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;; 231.39 9.3636e-26 3022770000.0 2233220.0 2306230.0 2208620.0 2153450.0 2166690.0 2261820.0 2198450.0 2001100.0 2599680.0 2168890.0 False True 2221196.5916540697 2382991.4714045264 2519574.4983308194 2426076.5492017986 2442605.128522223 2105465.7071515783 2092102.574605436 2150432.243379904 1959023.6979272778 2030469.5833198526 1.0939324626682538 1.1736159413470724 1.240882660360404 1.1948352091219814 1.2029754833995205 1.0369353594103614 1.0303540578947321 1.0590812396529035 0.9648131220583174 1.0 20.953381985001933 2.7148281570134616 7.413991942050951 1.025571604954752 1.1849477348716067 0.789968139520122 0.041922751013799026 0.09665912585587216 23.786138861835624 0.013859887951274744 0.013328956134448079 518.5947991293621 -2.7148281570134616 0.15937612991685457 ASET(ph)PPPVAQPKPEAPHPGLETTLQER ddPTM_BT-474_Trastuzumab_2h_R1 4 ASETPPPVAQPKPEAPHPGLETTLQER 27 1 Q6P1N0-2;Q6P1N0 Q6P1N0-2 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 AS(0.003)ET(0.997)PPPVAQPKPEAPHPGLETTLQER;AS(0.012)ET(0.988)PPPVAQPKPEAPHPGLETTLQER;AS(0.002)ET(0.998)PPPVAQPKPEAPHPGLETTLQER;AS(0.038)ET(0.962)PPPVAQPKPEAPHPGLETTLQER 206.85 3.8166e-25 4701640000.0 2251630.0 2351590.0 2199690.0 2016730.0 2076170.0 2385440.0 2392620.0 2252350.0 2744430.0 2389170.0 True False 2239507.4742596108 2429861.2515838267 2509387.231951769 2272047.811220015 2340557.9430763004 2220540.14752176 2276879.829904 2420431.794201554 2068101.9999779065 2236691.125128655 1.0012591587185706 1.086364238801216 1.1219194298933108 1.015807585452518 1.0464377118417147 0.9927790755614652 1.0179679278572864 1.0821484321230674 0.9246256565080923 1.0 21.092934611142734 3.687597960428226 24.941911597228295 1.0196476321032217 1.0714993513558158 0.2293833927911808 0.04740842388198912 524.2542296850637 256577.93425494237 0.012470069807681368 0.01931857365748248 4870.773790317284 -3.687597960428226 0.05185171925259402 ASEYS(ph)PASLDAFGAFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASEYSPASLDAFGAFLK 17 0 P17029;E9PC66;B3KRF7 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 ASEYS(1)PASLDAFGAFLK;ASEYS(1)PASLDAFGAFLK 238.83 3.0523e-20 37044000.0 65587.0 93232.0 78430.0 76371.0 72373.0 111711.0 96601.0 90330.0 130513.0 104674.0 True False 65233.88687940073 96335.17076006577 89472.26227421919 86039.56076950494 81589.27256162118 103988.6815094082 91928.04057834357 97070.88328644582 98349.81993460085 97993.61570408 0.6656952742349387 0.9830759898785408 0.913041749009512 0.8780119005846893 0.8325978378836794 1.0611781263733755 0.9381023438909205 0.9905837496554812 1.0036349738496895 1.0 16.580400140082475 2.748550700904232 24.850633867953807 0.9924505827542063 0.8661887687623264 0.43950419608079383 0.08073808657936181 670.2758172533372 1667329.9585120773 0.02381952698897803 0.024985287332604342 560.467844324574 -2.748550700904232 -0.12626181399187986 ASFDHS(ph)PDSLPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASFDHSPDSLPLR 13 0 H0Y6H0;Q8NB78;Q8NB78-2 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 ASFDHS(0.998)PDS(0.002)LPLR;ASFDHS(0.989)PDS(0.011)LPLR;ASFDHS(1)PDSLPLR 172.58 2.4284e-05 291474000.0 429030.0 594650.0 588680.0 598610.0 516910.0 576000.0 612080.0 558250.0 643940.0 603780.0 True False 426720.1501497145 614442.5657764839 671561.0271017131 674393.9646231346 582735.4245343916 536182.475758155 582471.3520273354 599909.4497360612 485249.61535392544 565246.2434779351 0.7549278833312085 1.0870352043312062 1.1880857853554725 1.1930976497492816 1.0309408178440007 0.9485821125657519 1.0304736364870202 1.061324080713646 0.8584747284089959 1.0 19.108519973560874 3.0021571335713477 24.96896378875248 0.9937553549413782 1.0730374306805286 0.06582125266440875 0.12463323478685338 191.98779622623238 2222212.157631198 0.037115945172715534 0.04408747226591894 1004.9793395167818 -3.0021571335713477 0.07928207573915036 ASFENNCEIGCFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASFENNCEIGCFAK 14 0 P56537;B7ZBH1;P56537-2;F8WD20;A0A0B4J1Y7;F8WDS6 P56537 EIF6 Eukaryotic translation initiation factor 6 0 78.548 0.050184 95669000.0 34608.0 41392.0 41232.0 39200.0 43555.0 53670.0 50614.0 41623.0 55167.0 42076.0 False True 34421.67437331026 42769.7076980076 47037.10720503131 44162.71598073345 49101.47107928933 49959.919225590515 48165.60745574356 44729.1196173114 41571.83204992699 39390.67365692407 0.8738534068523005 1.085782590836437 1.194117866952579 1.121146501970792 1.2465252944629015 1.2683184771278617 1.222766786758851 1.1355256324601837 1.0553724572471108 1.0 15.265566469595923 4.700762230420519 2.4553891380695214 1.1680562171817317 0.821070068800741 0.5211700217563041 0.08029252442427942 0.3554663010031753 2.829572930550077 0.019876311961776836 0.25024804511368554 50206.76399180674 -4.700762230420519 -0.34698614838099073 ASFNHFDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASFNHFDK 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ; 104.17 0.0046324 667230000.0 1670360.0 1523110.0 1530460.0 1212410.0 1162660.0 1572060.0 1475190.0 1407390.0 1653020.0 1423010.0 False True 1661366.967354443 1573805.7956105608 1745935.4650032083 1365900.9816888035 1310717.859374276 1463387.1924311877 1403829.423926946 1512416.5883816117 1245655.370333175 1332192.2834998462 1.2470924715085505 1.1813653442549328 1.3105731707260784 1.025303177781814 0.9838803869444775 1.098480460032898 1.0537738743230816 1.1352840030031492 0.9350417246530454 1.0 20.345370899804536 3.7293830722125985 24.98400677504356 1.0460200920856204 1.2398458313224545 0.712647408049154 0.06162765937345174 355.1662080896938 966868.270922549 0.016357788143866916 0.02575393195097987 5362.694688586009 -3.7293830722125985 0.1938257392368341 ASFNNPDR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASFNNPDR 8 0 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 ;; 159.28 0.00083777 4001300000.0 1794060.0 2296390.0 1974600.0 2152730.0 1929530.0 2039140.0 2184200.0 1888500.0 2429870.0 2081380.0 False True 1784400.9802988023 2372823.952952931 2252606.516469124 2425265.397275623 2175244.208279674 1898179.051419244 2078541.9015457227 2029429.4596086938 1831061.0970898569 1948544.5464409299 0.9157609373406729 1.2177417022807917 1.1560456857830483 1.2446548382511637 1.1163430737330677 0.9741522486033589 1.0667151055603201 1.0415104254688468 0.9397070754345033 1.0 20.89396548322517 2.8656278736296943 5.396460092946495 1.0155102104724612 1.1454272564741688 0.3267048015335108 0.08893887313798703 0.2690566945789432 10.732403116911833 0.026769261932953495 0.028526627051349947 733.8847675769617 -2.8656278736296943 0.12991704600170761 ASFTNSELHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASFTNSELHR 10 0 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 0 ; 199.08 2.8514e-07 358050000.0 212670.0 321500.0 314720.0 312230.0 304000.0 297720.0 302420.0 260890.0 306900.0 306140.0 False True 211525.00834985828 332200.9331491459 359029.840404721 351758.2859863371 342712.5980508317 277139.3171574961 287790.7892434105 280358.9365725767 231268.60724930823 286601.88310035976 0.7380447262301773 1.1591024090822832 1.2527127753693057 1.2273411541513195 1.1957792961563465 0.9669835876844183 1.0041482844780696 0.9782173569124912 0.806933313722592 1.0 18.128688563208627 2.7100290880641054 14.044748025309698 0.9566885414349474 1.1310016571107182 0.2364032273744624 0.14512761735864524 5.134140295411678 2525.5753487617285 0.04779482584614975 0.045189398610787676 512.8957354396088 -2.7100290880641054 0.1743131156757708 ASGDGES(ph)LDEDSEFTLASDFEIGHFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGDGESLDEDSEFTLASDFEIGHFFR 27 0 Q99733;Q99733-2;H0YCI4 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 ASGDGES(1)LDEDSEFTLASDFEIGHFFR;AS(0.004)GDGES(0.995)LDEDS(0.001)EFTLASDFEIGHFFR 229.7 4.5913000000000003e-35 34365000.0 9969.1 10985.0 9134.4 9999.0 11271.5 11184.7 13783.6 9805.4 14175.5 10953.9 True False 9915.427473271138 11350.629084427279 10420.444122371904 11264.87237477943 12706.858713585341 10411.528014951797 13116.834609534651 10537.128738812315 10682.137966968301 10254.812723894385 0.9669047831724458 1.1068587394072609 1.016151577111846 1.0984961576657115 1.239111727898992 1.0152821212124385 1.2790906048407464 1.027530099526841 1.0416707018040632 1.0 13.324013524728901 5.846025646931019 1.0370522566584628 1.103347500353598 1.6535362642820422e-10 0.12922193329019516 0.09222996469763811 29.45762663192862 4.293301417307861 0.02581102880235929 60.98374979611613 701496.7235533996 -5.846025646931019 -1.1033475001882442 ASGDGESLDEDSEFTLASDFEIGHFFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASGDGESLDEDSEFTLASDFEIGHFFR 27 0 Q99733;Q99733-2;H0YCI4 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 0 ;; 238.7 4.2123999999999996e-45 164425000.0 81057.0 95732.0 95426.0 88094.0 86118.0 109385.0 100461.0 82267.0 114351.0 106565.0 False True 80620.59811827929 98918.38174878394 108861.15134233906 99246.69136751875 97084.61683862327 101823.47241459333 95601.3176317117 88406.18128336158 86170.72827489626 99763.93046511328 0.8081136914154733 0.9915245047745485 1.0911874746194667 0.9948153696913996 0.9731434636346155 1.0206441540532554 0.9582753725319872 0.8861537518740461 0.8637463246802364 1.0 16.606230684641094 1.930418565530827 4.963761393236331 0.9065906735689847 0.986208735300306 0.11855702244046307 0.07430680698926251 0.3753772455287799 17.200084281087225 0.033638243156557175 0.020138500472712522 85.19587457913129 -1.930418565530827 0.07961806173132124 ASGDPGASGMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 9 ASGDPGASGMSPR 13 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGAS(0.001)GMS(0.999)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR 221.63 1.9723e-11 6567524000.0 4528870.0 5259580.0 4744110.0 5041830.0 4910470.0 5267890.0 5163240.0 4424900.0 5339770.0 4953160.0 True False 4504487.067124758 5434641.940816748 5412039.451456669 5680125.161049522 5535789.247864038 4903733.163579205 4913474.355707775 4755108.507186918 4023855.2327521653 4637045.088186377 0.9714132559548899 1.1720054123826353 1.1671310820860283 1.2249449925601459 1.1938182921635498 1.057512504261013 1.0596132369352298 1.0254609167595385 0.8677628007119422 1.0 22.14477432411223 1.9222320682452023 1.2743230276062376 0.9458414556127094 1.1477079608863106 0.5113833349329026 0.07554107183264137 0.35789910089469323 1.0759626871540497 0.057609783281342995 0.02535811642599747 83.6049647773784 -1.9222320682452023 0.20186650527360117 ASGQAFELILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 16 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;AS(0.004)GQAFELILS(0.996)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR 195.5 1.5667e-07 29458202000.0 5810597.9 7464997.0 6868784.0 7365652.0 6502706.7 6723582.6 6401089.6 4995222.4 6093905.0 6599427.0 True False 5779314.286524511 7713464.912459022 7835849.082659201 8298142.787982685 7330787.853682729 6258797.1604729965 6091444.441511098 5367991.2607133845 4592143.766893437 6178245.91880629 0.9354296288097808 1.2484878416670981 1.268296727847502 1.3431227725532142 1.1865484071082628 1.013037882066415 0.9859504658060029 0.8688536084932248 0.7432762999794436 1.0 22.558765866444023 2.407378499756599 1.620143002223409 0.8688561978229804 1.2126768008877644 0.5891233690893494 0.11797484347859714 0.2526953652026257 1.345600578993229 0.05762579046866562 0.04170345617986604 255.49270228075716 -2.407378499756599 0.343820603064784 ASGQAFELILSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 ; 95.631 0.0037525 0.0 137257.0 191557.0 158156.0 161220.0 129538.0 145679.0 143442.0 131634.0 176076.0 163938.0 False True 136518.02356268617 197932.85894634837 180422.9900834045 181630.43546974086 146033.89646812042 135608.5536214794 136503.1624583469 141457.19750390822 132684.42909752106 153475.33648561686 0.8895111533147225 1.2896720963690338 1.1755829582449755 1.183450316049723 0.9515137729103866 0.8835853155740637 0.8894143227445503 0.9216933531021453 0.8645325831226033 1.0 17.227647307304256 3.1587545918814515 4.878602326510206 0.907889909174549 1.1484365394418297 0.525636736328651 0.1005129810413184 0.14468176620795997 6.155460674431459 0.027852615829511245 0.03396185048743412 1441.3006811638213 -3.1587545918814515 0.24054663026728063 ASGS(ph)ENEGDYNPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASGSENEGDYNPGR 14 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 ASGS(1)ENEGDYNPGR;AS(0.001)GS(0.999)ENEGDYNPGR;AS(0.001)GS(0.999)ENEGDYNPGR;ASGS(1)ENEGDYNPGR 301.75 6.716e-44 1235288000.0 745659.0 1175532.0 1067415.0 1013245.0 1040792.0 1267011.0 1129152.0 1132751.0 1249549.0 1166231.0 True False 741644.4547945034 1214658.8719959005 1217697.7538624993 1141521.7131096504 1173330.691942502 1179425.5117930816 1074530.6039804763 1217282.6316130273 941614.3920487656 1091801.1391194072 0.6792852912689551 1.1125275734513196 1.115310939173991 1.0455399543092119 1.0746743613849428 1.080256714830274 0.9841816109911183 1.114930721353549 0.8624412984293323 1.0 20.05827867674285 4.744321855521808 24.973210875542183 1.051440317080992 0.6792851290977919 0.6788681682648698 0.07492505524962209 335.8615757313601 1455814.229133839 0.016695029117191472 0.1502231059960728 55503.68982679976 -4.744321855521808 -0.37215518798320013 ASGS(ph)ENEGDYNPGRK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASGSENEGDYNPGRK 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 AS(0.026)GS(0.974)ENEGDYNPGRK 118.19 7.5956e-05 690170000.0 94981.0 149500.0 114650.0 136610.0 126590.0 181330.0 139050.0 172570.0 235990.0 174300.0 True False 94469.63284938122 154476.01712534155 130791.72344433538 153904.81199306116 142710.48614228543 168795.0839049064 132323.62027741605 185448.04969270417 177833.4266039893 163176.02477426242 0.5789430952253583 0.9466832970042232 0.8015376255505215 0.9431827513016875 0.8745799901652893 1.0344355682056687 0.8109256274656307 1.1364907923774517 1.089825707238572 1.0 17.316069574146933 5.8673038625708 0.3420911630037643 1.0490922863837597 2.9166917126483165e-14 0.5484654555195203 0.10426040009066605 11.092280149610453 0.5717367048236242 0.09140766197154211 5.595583424160333 736722.3793343959 -5.8673038625708 -1.0490922863837306 ASGSALGGESSAQPTALPQGEHARS(ph)PQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGSALGGESSAQPTALPQGEHARSPQPR 29 1 Q4ZG55;Q4ZG55-4 Q4ZG55 GREB1 Protein GREB1 1 ASGSALGGESSAQPT(0.028)ALPQGEHARS(0.972)PQPR;ASGSALGGESSAQPT(0.004)ALPQGEHARS(0.996)PQPR 170.97 1.4609999999999995e-12 547730000.0 97611.0 121493.0 124754.0 140530.0 121109.0 133556.0 164558.0 126593.0 166019.0 159086.0 True False 97085.47322160171 125536.8210609306 142318.2788187932 158321.0835911344 136531.5132807176 124323.5880770071 156597.70086739326 136040.01248622866 125105.84199062547 148932.995279623 0.6518735021700389 0.8429080528813251 0.9555859569707128 1.06303565099114 0.9167311315023141 0.8347618863341094 1.0514641203138346 0.9134309843887337 0.8400142745785658 1.0 17.184303884857172 4.63643610400153 2.440654649822293 0.9462789479514538 0.6187697800849364 0.6022959495197704 0.07334547947586333 0.2842191518775805 2.434425013301294 0.01839929226476447 0.1763710904466742 43294.83651022376 -4.63643610400153 -0.3275091678665174 ASGTNDKPGGPHYILR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASGTNDKPGGPHYILR 16 1 P30038-2;P30038;P30038-3 P30038-2 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 0 ; 174.17 2.3818e-09 419320000.0 657680.0 679020.0 730330.0 568050.0 732170.0 1254140.0 659780.0 569970.0 943380.0 853180.0 False True 654139.123955117 701620.7702237425 833154.1158578421 639965.0717565216 825407.5095884126 1167444.2537280074 627863.9207956388 612504.0556490154 710896.6396443546 798729.3219558523 0.8189747214404541 0.878421200946624 1.0430994492823848 0.8012289697709307 1.0334007865984352 1.4616268886551969 0.7860784668054822 0.7668480908515712 0.8900344836515812 1.0 19.607347151516286 -2.6703807260300265 2.004036680947297 2.3775013500532416 0.9375876484325316 0.007255320221292938 0.19633179826648858 11100416.294160204 537421.2419679996 69921844.37477212 0.051529893794539705 0.0021360886576067438 2.6703807260300265 -1.43991370162071 ASHDPLVPNS(ph)SPLPTNGISGSPESFASSLDGSGHAGPEGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSR 41 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 ASHDPLVPNS(0.498)S(0.498)PLPT(0.005)NGISGSPESFASSLDGSGHAGPEGSR 86.544 0.00052119 92651000.0 22060.0 45074.0 37874.0 37859.0 36779.0 42471.0 40088.0 30890.0 47070.0 50410.0 True False 21941.231411096396 46574.2608421916 43206.32999329056 42651.94551822925 41462.58764378793 39535.07973598018 38148.790288968405 33195.16865624172 35470.229205685704 47192.790641827676 0.4649276110332317 0.9868935532053944 0.9155281856758041 0.9037809576030071 0.8785788481649783 0.8377355777926734 0.8083605519008354 0.7033949085185132 0.7516027071780729 1.0 15.526278864143249 -0.45443561281505684 9.2725040514318 1.000011787656154 0.8123876090224142 0.14969427394466317 0.1381252067938286 0.0 0.0 0.1297846271829483 0.030590529991610237 0.3512079896898573 0.45443561281505684 -0.1876241786337398 ASHGYGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASHGYGGK 8 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;;;; 91.853 0.012192 4093160000.0 6970320.0 7173270.0 6560980.0 6277490.0 6423010.0 4730100.0 7179910.0 6289260.0 8746310.0 7481190.0 False True 6932792.5715953605 7412027.955616718 7484708.954939519 7072219.590354454 7240942.251337074 4403119.320457725 6832590.323380252 6758596.517415184 6590899.095049517 7003734.049230997 0.9898709064140684 1.0582966034283598 1.0686740676227322 1.0097784325678352 1.0338688191811225 0.6286816845852653 0.9755639313760727 0.9649990233648679 0.9410550213244021 1.0 22.739692871093894 2.914877538759237 24.999999988396237 0.9034647017430926 1.0344522326454724 0.2978732247011322 0.0997791066311004 107.2518974331747 31497.528821538886 0.03069721206730897 0.03255931744910927 822.0108287656052 -2.914877538759237 0.1309875309023798 ASHSSERPPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 ;; 94.767 0.0049619 446740000.0 2814.2 14116.5 9911.0 10562.4 14158.8 13684.0 15301.5 19231.9 18821.800000000003 16532.7 False True 2799.0486598870143 14586.359168895557 11306.382652043694 11899.598757012727 15961.839254217462 12738.057288671154 14561.307987593553 20667.08203560942 14183.419589198542 15477.568931643413 0.18084549791049198 0.9424192670900786 0.7305011983457004 0.7688286713221716 1.0312885262997584 0.8230011667160848 0.9408007195382866 1.335292520865871 0.916385489984863 1.0 13.91789126410067 4.757984276750661 0.5313606730523531 1.0688316765497656 4.247952467745049e-18 0.5569597554349428 0.18572437142080486 3.395155489141543 0.7230378531310285 0.10593467019571065 2.281308636787822 57277.52937852389 -4.757984276750661 -1.0688316765497656 ASHTAPQVLFSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASHTAPQVLFSHR 13 0 O15144;H7C3F9 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;;; 201.95 5.6517e-08 2280540000.0 1282250.0 1839550.0 1723590.0 1619760.0 1321260.0 1406550.0 1521490.0 1118011.0 1918640.0 1424410.0 False True 1275346.5084713672 1900778.309718541 1966256.490287154 1824821.449922266 1489514.629278425 1309318.509162557 1447889.7160437696 1201442.657964826 1445816.8804588246 1333502.934301244 0.9563882280766401 1.4254024200663267 1.4745048096331883 1.3684420206232788 1.1169938895252083 0.9818639880598691 1.0857791751335473 0.9009673897675992 1.084224746169331 1.0 20.346789568789088 3.0722502124043167 3.6823151486077785 1.0045334503957375 1.3259084925501121 0.49523294773628845 0.13986830461303754 0.17962009605352963 4.8766556026448376 0.04214008968199116 0.05060401845520756 1181.00085602762 -3.0722502124043167 0.3213750421543746 ASIGQS(ph)PGLPSTTFK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASIGQSPGLPSTTFK 15 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 ASIGQS(0.999)PGLPS(0.001)TTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(0.999)PGLPS(0.001)TTFK 266.44 2.7415e-25 4217980000.0 5351060.0 5431690.0 4812220.0 4857530.0 4656900.0 5482940.0 5513000.0 5356320.0 7150600.0 5655430.0 True False 5322250.487518652 5612480.51812406 5489738.747433934 5472492.799946229 5249928.611391179 5103917.263252462 5246315.128294831 5756035.797241848 5388430.443131007 5294495.615542785 1.0052422126659977 1.060059527039324 1.0368766254745747 1.0336192901701355 0.9915823890720066 0.9640044366585456 0.9908998909912187 1.0871735884234452 1.0177419785394595 1.0 22.33606182056441 -1.3069158373296226 2.814194211903561 0.9997358830705274 1.0236673863359127 0.026317164877956656 0.03415899705465619 1014369988.40792 1075237528.6545548 2198661.8351028687 0.008956428642507525 0.049326938621105425 1.3069158373296226 0.02393150326538529 ASIHEAWTDGK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASIHEAWTDGK 11 0 O43707;O43707-2;P12814-3;P12814;P12814-2;P12814-4;H9KV75 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 ;;;;; 174.57 1.0848e-05 7532470000.0 11018540.0 11310930.0 10927880.0 9514670.0 9787190.0 13117640.0 11880280.0 12170360.0 12333730.0 12591800.0 False True 10959217.404914878 11687407.467448434 12466430.517164273 10719226.246438907 11033530.633279996 12210848.422403116 11305585.469323149 13078574.063035876 9294247.505014695 11788180.543617647 0.9296784490502578 0.9914513460498555 1.0575364426288707 0.9093198230869061 0.9359824947076982 1.0358552261073326 0.9590611059519457 1.1094650285210361 0.7884378314893373 1.0 23.490837725763964 2.7523820274030713 24.68909601176563 0.9939284373326523 0.9683451869661347 0.0 0.08549910737901072 3685.2497375637977 6582934.139703049 0.025654217117268098 0.027070377106112847 565.4341405971275 -2.7523820274030713 -0.02558325036651765 ASILWLIGENCER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASILWLIGENCER 13 0 O00203;O00203-3 O00203 AP3B1 AP-3 complex subunit beta-1 0 174.42 4.653100000000001e-05 96452000.0 91752.0 121250.0 123720.0 111800.0 117910.0 134640.0 127250.0 126010.0 128270.0 125520.0 False True 91258.01742660554 125285.73295282724 141138.70060648228 125953.86853688768 132925.13959267593 125332.65370846874 121094.43135779352 135413.5060658149 96659.57722994074 117509.20613692145 0.7766031311646503 1.0661780218891497 1.2010863254580053 1.0718638366948587 1.1311891549823923 1.0665773161843288 1.03051016459676 1.1523650828517333 0.8225702513666311 1.0 16.842414262101983 -0.10227118000721279 6.595466605770379 0.9999999965605677 1.053344513388567 0.0 0.12989966689376162 2690195.0939963837 407885.4478722538 0.11955949314423521 0.028997436419055743 0.7901850704794205 0.10227118000721279 0.053344516827999344 ASKSS(ph)PAGNSPAPL ddPTM_BT-474_Trastuzumab_2h_R1 1 ASKSSPAGNSPAPL 14 1 B4DSP0;A0A087WZG9;Q86TG7-2 B4DSP0 PEG10 Retrotransposon-derived protein PEG10 1 ASKS(0.036)S(0.963)PAGNSPAPL 167.21 9.6918e-06 317680000.0 385210.0 565760.0 486610.0 507780.0 498310.0 604770.0 676490.0 463710.0 757990.0 630240.0 True False 383136.0721608542 584590.9795908584 555120.4583100576 572064.8959361439 561766.8247852294 562963.6733754504 643765.5942572409 498314.39487166825 571193.5210456282 590017.5436243898 0.6493638643476708 0.9908027073225708 0.9408541564714084 0.9695726883340359 0.9521188494402718 0.954147346055591 1.0910956821769822 0.8445755558565212 0.9680958256543892 1.0 19.17039832674793 4.7418051091990066 24.99627734712294 0.9617224703940355 0.6493637485498708 0.7311291031721592 0.05784375982897136 157.86840677878698 1216196.3899606054 0.013461157377059284 0.09675421755243102 55182.97486452189 -4.7418051091990066 -0.3123587218441647 ASLENSLR ddPTM_BT-474_Trastuzumab_2h_R1 8 ASLENSLR 8 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;; 264.58 4.5442e-13 12566780000.0 4482560.0 5645350.0 5557200.0 5174850.0 4550660.0 4994980.0 5318820.0 4258010.0 6227690.0 4928120.0 False True 4458426.395019238 5833252.062063859 6339605.4559516935 5829985.479410674 5130159.577124982 4649688.789518172 5061528.356734462 4575764.327936674 4692959.246270599 4613603.162424204 0.9663653847238503 1.2643592993808324 1.3741115637307146 1.2636512665184072 1.1119637724605156 1.0078215715187362 1.0970879329107486 0.9917984202031698 1.017200457224565 1.0 22.137462485736854 3.03411068200086 3.663207984824995 1.0272349240256358 1.2308362688375916 0.45140409844210716 0.1002271316370373 0.2066092305683258 5.913099930412888 0.031240879228487894 0.036760859469597056 1081.7095949735187 -3.03411068200086 0.2036013448119558 ASLGS(ph)LEGEAEAEASS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 ASLGS(1)LEGEAEAEAS(0.011)S(0.989)PK;AS(0.006)LGS(0.994)LEGEAEAEAS(0.004)S(0.996)PK;ASLGS(1)LEGEAEAEAS(0.003)S(0.997)PK 274.17 7.2713e-39 1355880000.0 1822010.0 1597730.0 1427000.0 1298430.0 1549240.0 2161640.0 2039390.0 1739940.0 2539470.0 1881340.0 True False 1812200.5006043403 1650909.4772018204 1627909.1962936497 1462811.104868971 1746526.530935098 2012210.9147532233 1940736.914473641 1869783.1580362981 1913651.6456546157 1761271.2705037913 1.028916176033452 0.9373396959626763 0.924280787154386 0.8305427615648048 0.9916283540101828 1.142476430775853 1.1018955154582835 1.0616099798763357 1.0865172660809017 1.0 20.748185699089767 2.994071486693338 24.75469475623142 1.080923539554363 0.9279393576590316 0.6135961596200538 0.05564680681520353 150.6563654020074 629075.1774307241 0.016334001254795106 0.018925440677702084 986.4418447335512 -2.994071486693338 -0.15298418189533147 ASLGS(ph)LEGEAEAEASSPK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;AS(0.001)LGS(0.999)LEGEAEAEASSPK;AS(0.001)LGS(0.999)LEGEAEAEASSPK 476.9 1.7148999999999983e-239 8454900000.0 2257860.0 2320550.0 2152760.0 1882700.0 2134910.0 3098450.0 3268180.0 2681720.0 3440060.0 3154180.0 True False 2245703.932631826 2397788.1039479 2455849.8958746404 2121049.626962418 2406778.1338970414 2884261.4444667567 3110085.647739993 2881843.56389824 2592303.307442343 2952877.531970639 0.7605137389944947 0.8120174568661189 0.8316802404723163 0.7182992196587679 0.8150619549368336 0.9767629755176164 1.0532389555839248 0.9759441536930273 0.8778905590819873 1.0 21.49369009251379 2.772095589130761 4.407312422571317 0.982651160085077 0.7850262353086112 0.7864804677791888 0.049452718002499195 0.09502780832546198 4.407295918617599 0.016006401064837486 0.016510552631628192 591.6918524680317 -2.772095589130761 -0.19762492477646587 ASLGSLEGEAEAEAS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 ASLGSLEGEAEAEAS(0.542)S(0.458)PK 78.285 0.012767 423860000.0 77631.0 73357.0 72054.0 66441.0 68806.0 88159.0 72426.0 68183.0 78717.0 74864.0 True False 77213.04332161492 75798.64339975709 82198.57689540475 74852.42378765087 77568.03625488661 82064.77583396384 68922.47768581186 73271.16168625862 59318.2501037595 70086.11542570495 1.1016881568142396 1.081507270582113 1.1728225540269765 1.068006456528447 1.1067532532476123 1.1709134588998147 0.983397029028858 1.0454447538033407 0.846362360696678 1.0 16.096841043606833 1.794343211084621 1.5864331209962974 0.9398310281535591 1.1131049589236044 0.5809543642605575 0.059593261090149265 0.2483741448600205 1.1997307538163577 0.041144797022574155 0.016922086156631266 62.279226648676044 -1.794343211084621 0.17327393077004527 ASLGSLEGEAEAEASS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 ASLGSLEGEAEAEAS(0.002)S(0.998)PK;ASLGSLEGEAEAEAS(0.027)S(0.973)PK;ASLGSLEGEAEAEASS(1)PK;ASLGSLEGEAEAEAS(0.011)S(0.989)PK 434.22 3.180199999999998e-169 2948190000.0 5411110.0 4493990.0 4049120.0 3452618.0 3565881.0 5113480.0 4633310.0 3953245.0 5478170.0 4385610.0 True False 5381977.184990844 4643569.740475677 4619200.900418033 3889719.084795102 4019974.8087174185 4759997.163437161 4409179.094336962 4248256.21607136 4128148.407217152 4105716.6150903776 1.3108496492937742 1.1310010348518562 1.1250656909540144 0.9473910280360348 0.9791164821123263 1.1593584286704066 1.0739121833521637 1.0347173500618831 1.0054635510021144 1.0 21.969202622461662 4.74929499315005 1.3991961419379877 1.0383898450096687 1.4246813252387358 0.6692491872516584 0.05918809059753456 0.8032681259324227 1.3816028696200933 0.01691921325772984 0.4407016297399052 56142.91955479956 -4.74929499315005 0.3862914802290671 ASLHALVGSPIIWGGEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASLHALVGSPIIWGGEPR 18 0 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753;P49753-2 Q86TX2 ACOT1;ACOT2 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial 0 ; 205.18 9.9052e-16 641730000.0 240640.0 419500.0 425270.0 414210.0 425250.0 571720.0 419090.0 386730.0 406360.0 449380.0 False True 239344.42097761764 433462.8039068946 485144.319486895 466648.94353009143 479403.06684577675 532198.3420841182 398817.0156207285 415589.7563751488 306218.0229450278 420700.1836664259 0.5689192215028706 1.0303366167545776 1.1531830465554704 1.1092197285563783 1.139536148208332 1.2650299732364734 0.9479839351269488 0.9878525670068897 0.7278770840466967 1.0 18.682432922385644 -1.420920137173082 8.462070231411134 0.9999998613815401 1.0105202169499634 0.0 0.19779547048972584 4.904016278176737e-07 3.347417165638815e-08 0.1900907070379391 0.044804245504033634 0.03793847439822469 1.420920137173082 0.010520355568423345 ASLLHSMPTHSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 ASLLHSMPT(0.009)HS(0.405)S(0.585)PR 109.35 0.00049779 167340000.0 101650.0 150660.0 147690.0 142230.0 143640.0 158790.0 153470.0 107720.0 158740.0 144540.0 True False 101102.72769437682 155674.62702410662 168483.4682555075 160236.30341682967 161931.70257901764 147813.22105145373 146046.06978766693 115758.61339107665 119620.65400702243 135315.33345308027 0.7471638661662358 1.1504581413760164 1.2451173415164223 1.1841695935545293 1.1966988400111096 1.0923612075545528 1.0793017026286047 0.8554729936146905 0.8840140356192533 1.0 17.045965804093512 1.843591332124207 4.650630624703454 0.9020722319006642 1.116698643850645 0.285708111681621 0.1335012113462895 0.25858218323764587 8.399182384514864 0.06402612457677886 0.03634602617104065 69.75756816145652 -1.843591332124207 0.21462641194998078 ASLNPSDTPPSVVNEDFLHDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASLNPSDTPPSVVNEDFLHDLK 22 0 A0A1B0GWA2;A0A2R8YEL0;O00116 A0A1B0GWA2 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal 0 119.18 7.4682e-05 247440000.0 111940.0 113340.0 97492.0 100680.0 108300.0 147620.0 134470.0 126580.0 201160.0 143090.0 False True 111337.32747770313 117112.4533845232 111218.02618434506 113426.07767704717 122091.36305560867 137415.376860102 127965.1723747153 136026.04236021623 151586.8134059006 133957.87369448753 0.8311368671887538 0.8742483749153632 0.8302462790503502 0.8467294571704951 0.9114161018564512 1.025810376577788 0.9552642845508317 1.0154389481460828 1.1316006235782654 1.0 17.03141985596162 ASLPQAATFGELSGPLKPGS(ph)PYRPPVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASLPQAATFGELSGPLKPGSPYRPPVPR 28 2 Q14687;Q14687-2;Q14687-3;H0Y613 Q14687 GSE1 Genetic suppressor element 1 1 ASLPQAATFGELSGPLKPGS(1)PYRPPVPR;ASLPQAATFGELSGPLKPGS(1)PYRPPVPR 281.39 4.516099999999998e-62 2448300000.0 1474850.0 1272360.0 1056210.0 1143420.0 1073500.0 1314460.0 1371350.0 1143170.0 1669100.0 1515560.0 True False 1466909.5714712378 1314709.7334421373 1204915.1872581034 1288176.8547625076 1210203.8618669997 1223594.474106014 1305012.5614342655 1228479.1502996385 1257772.6697941364 1418835.6632638036 1.0338826471959748 0.9266117052751963 0.8492281512619929 0.9079112459009266 0.8529556263641697 0.8623933735153876 0.9197771068372314 0.8658361092176944 0.8864822772362744 1.0 20.436276068148874 4.675322399066877 3.1199144387837947 0.8866665516127842 1.0465255856841125 0.489879227857693 0.0425774406006559 0.21054633810433307 3.2629353003222867 0.009302941001858186 0.0753418954134455 47350.26338124021 -4.675322399066877 0.1598590340713283 ASLQVLGTVGEPINPEAWLWYHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASLQVLGTVGEPINPEAWLWYHR 23 0 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ; 303.13 4.4315999999999996e-62 3501600000.0 870800.0 1118390.0 1039270.0 1050970.0 977320.0 1071100.0 1145620.0 937020.0 1152740.0 1100280.0 False True 866111.7095549747 1155614.935068968 1185590.1825032237 1184022.6942416169 1101775.9089705213 997057.378098194 1090201.983906607 1006945.1904911504 868662.6729246257 1030059.1884028993 0.8408368366655471 1.1218917787246208 1.1509922884542918 1.149470542636911 1.0696238831467717 0.9679612485609935 1.0583877083771842 0.977560514801497 0.8433133578192551 1.0 19.974295808054965 1.7976561276863754 1.3581305929208567 0.9242183702733913 1.0684938196191345 0.21448064707465686 0.09563228276909734 0.5967000609200842 2.073284035783975 0.07555487429459257 0.030549346879923563 62.75612620051877 -1.7976561276863754 0.1442754493457432 ASLRDEK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASLRDEK 7 1 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753;Q8N9L9 Q86TX2;Q8N9L9 ACOT1;ACOT2;ACOT4 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial;Acyl-coenzyme A thioesterase 4 0 ;;; 136.16 0.0027429000000000004 1034860000.0 1287960.0 1318050.0 1264960.0 1142380.0 1203170.0 1557660.0 1450830.0 1271980.0 1934690.0 1490770.0 False True 1281025.7664658076 1361920.4974719496 1443055.3727705756 1287005.190869139 1356386.5677526938 1449982.630537235 1380647.8101911813 1366901.6065835669 1457911.573017806 1395627.7822875907 0.917884970995678 0.9758479408023886 1.0339829796202866 0.9221693686547232 0.9718827505206467 1.0389465220881104 0.9892664990719405 0.9794170221683762 1.0446277951189287 1.0 20.412482791494455 2.9672057689121467 22.541867016649242 1.0050022814304191 0.9658461853164575 0.2917085133141032 0.035496811420715944 302.00449273244647 207589.51743251795 0.010910266569768155 0.011585148183262313 927.2690597949194 -2.9672057689121467 -0.03915609611396165 ASMSEFLES(ph)EDGEVEQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASMSEFLESEDGEVEQQR 18 0 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR 300.18 1.7009e-49 499614000.0 280032.0 333911.0 281580.0 310268.0 306973.0 323267.0 318415.0 292083.0 346553.0 331239.0 True False 278524.3388264799 345025.0257815383 321224.0164627647 349547.8969875053 346064.1919784795 300920.3131786652 303012.0499865767 313879.7166274215 261149.65672228602 310099.0434320248 0.898178645583387 1.1126284749639013 1.0358755477205417 1.1272137221672143 1.1159795533337027 0.9704006495738462 0.9771460325481411 1.0121918247588064 0.8421491850861877 1.0 18.242369550087435 2.7063511398858684 17.77319711699985 0.9667691137305539 1.0636299376851022 0.29460051691384903 0.07493142489933155 26.08679704158458 14393.603388942276 0.023635395110650482 0.022296764918583258 508.5704705854246 -2.7063511398858684 0.09686082395454831 ASNEDGDIKR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASNEDGDIKR 10 1 Q9UBT2;Q9UBT2-2;K7EPL2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 ;;;; 144.17 5.239300000000001e-05 5124460000.0 6059820.0 6018490.0 5333080.0 5032010.0 5367620.0 6370550.0 6418020.0 5960980.0 8492650.0 6414740.0 False True 6027194.602429295 6218811.801395963 6083931.308037654 5669061.950056391 6051154.59062369 5930168.873161657 6107555.853382691 6405818.596843106 6399750.2031796705 6005345.801264788 1.003638225322496 1.0355459963831253 1.0130859253361089 0.9440025833087626 1.0076280019294233 0.9874816654042973 1.017019844568547 1.066686050867208 1.065675552244105 1.0 22.517815891259428 1.9446338707652324 5.0571213281691545 1.0500797240405393 0.9989870449705668 0.3406798274419729 0.027971849618160842 0.2153487034470982 11.568008919610348 0.01264810631678525 0.007674129261780915 88.03064232930558 -1.9446338707652324 -0.0510926790699725 ASNGDAWVEAHGK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASNGDAWVEAHGK 13 0 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;; 129.01 0.0001587 1288480000.0 1555710.0 1713530.0 1998830.0 1452080.0 1841930.0 3143210.0 1593480.0 1279680.0 2620460.0 1881900.0 False True 1547334.2302156314 1770563.8101992412 2280247.889858185 1635913.1791148833 2076488.8675255533 2925927.291020463 1516397.2847152632 1375176.2196833738 1974682.7453650122 1761795.5308243486 0.8782711745736066 1.0049768995445174 1.294274988194147 0.928548830152518 1.1786208054200018 1.6607643962244667 0.8607112790243809 0.7805538132111877 1.1208353698349167 1.0 20.748615068053137 ASNTST(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASNTSTPTK 9 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 AS(0.002)NT(0.017)S(0.392)T(0.585)PT(0.004)K 91.093 0.024592 0.0 452950.0 319860.0 270830.0 241850.0 281120.0 274310.0 364010.0 364370.0 508660.0 428400.0 True False 450511.36752747546 330506.34674054704 308960.5099034401 272468.1852025609 316918.96567121596 255347.5953562838 346401.4456467618 391561.13963337033 383307.5586947967 401059.14522830734 1.1233040634717777 0.8240838057748382 0.7703614630893428 0.6793715800881573 0.7902050593829655 0.6366831386201762 0.8637166107995592 0.9763176935174233 0.9557382327651315 1.0 18.613455484771503 1.872200327559568 3.95587830900921 0.9723869260035216 0.7942581944240561 0.28058058626142945 0.12241317176027085 0.3060349554534065 7.6630879952336 0.061467772704686126 0.034220283159747414 74.50755765972075 -1.872200327559568 -0.17812873157946552 ASNTST(ph)PTKGNTETSASASQTNHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 ASNT(0.006)S(0.042)T(0.951)PT(0.001)KGNTETSASASQTNHVK;AS(0.014)NT(0.054)S(0.162)T(0.765)PT(0.005)KGNTETSASASQTNHVK 253.79 1.1822999999999999e-44 606960000.0 354562.0 221453.0 209328.0 184780.0 194353.0 307505.0 304481.0 304310.0 483240.0 318806.0 True False 352653.07758754137 228823.92923383435 238799.562888407 208173.12905407962 219102.70252951732 286247.90313890873 289752.0907996255 327019.157454869 364151.9770842479 298459.5281364514 1.1815775485187843 0.7666832775036063 0.8001070174554162 0.697491986112455 0.734111937714204 0.9590844860146007 0.9708254000426987 1.0956901242079313 1.220105048607337 1.0 18.187175786109552 2.131522267272521 1.7054064836523977 1.11452461210083 0.8269912373047151 0.40221139998479594 0.13759678375434717 0.3472779664449007 1.949172430331413 0.07893770917247717 0.04407950380722727 135.3699496164977 -2.131522267272521 -0.28753337479611496 ASPAEGSAGSPGS(ph)PTCCR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPAEGSAGSPGSPTCCR 18 0 A4D1S0-2;A4D1S0 A4D1S0-2 KLRG2 Killer cell lectin-like receptor subfamily G member 2 1 ASPAEGSAGSPGS(1)PTCCR 255.93 1.4813999999999995e-30 148210000.0 62864.0 75300.0 71588.0 72402.0 66117.0 74421.0 67197.0 62442.0 72814.0 71113.0 True False 62525.54720884698 77806.31498018869 81666.96814594927 81568.08577645567 74536.60804383813 69276.45143819034 63946.42439253173 67101.73911405129 54869.96535761199 66574.50745709763 0.9391815215326993 1.1687103360145643 1.2267002981370554 1.225215009349041 1.1195968380520351 1.0405852643045677 0.9605241831303144 1.0079194225701695 0.8241888292297415 1.0 16.022682229431734 2.5150903629968444 1.9296090221233542 0.9510217268126243 1.1499647911375606 0.49814567078341954 0.08861724229473263 0.28685450576765426 2.1539572484142657 0.03719409844733235 0.030977852271085096 327.4088112489603 -2.5150903629968444 0.19894306432493625 ASPDQNASTHT(ph)PQSSVK ddPTM_BT-474_Trastuzumab_2h_R1 5 ASPDQNASTHTPQSSVK 17 0 Q14677-2;Q14677;Q14677-3;H0YD52 Q14677-2 CLINT1 Clathrin interactor 1 1 ASPDQNASTHT(1)PQSSVK;ASPDQNASTHT(0.999)PQS(0.001)SVK;ASPDQNAST(0.002)HT(0.997)PQS(0.001)SVK;ASPDQNASTHT(0.996)PQS(0.003)SVK;ASPDQNASTHT(1)PQSSVK 279.79 2.5331e-35 6328620000.0 2648540.0 2845660.0 3070370.0 3004900.0 3203180.0 3882570.0 3599650.0 3279280.0 3962130.0 3556220.0 True False 2634280.5549204573 2940376.072862207 3502651.407865539 3385320.0319006643 3611085.9862646773 3614177.0744866994 3425521.1775016263 3523996.5254464312 2985716.151321935 3329258.9949668786 0.7912513141521645 0.8831923492006544 1.0520813830227065 1.0168388932848234 1.0846515671276582 1.0855800284539459 1.02891399638186 1.0584927549265328 0.8968110188590596 1.0 21.666769676576198 4.397185576376966 3.119902984219917 1.0352614008328545 0.8015225261389046 0.6911998183202817 0.05229677379137982 0.12689958822962297 2.359089992230812 0.012860917743677586 0.04890331050273155 24956.60908514976 -4.397185576376966 -0.23373887469394983 ASPDS(ph)SSCGERSPPPPPPPPSDEALLHCVLEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPDSSSCGERSPPPPPPPPSDEALLHCVLEGK 33 1 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 AS(0.001)PDS(0.265)S(0.265)S(0.265)CGERS(0.204)PPPPPPPPSDEALLHCVLEGK 165.34 2.338e-14 87101000.0 30169.0 28260.0 26253.0 27001.0 23422.0 35584.0 28578.0 26325.0 43380.0 38048.0 True False 30006.573456091006 29200.617016469252 29949.194204833308 30419.323831525093 26404.652866929522 33124.16183572597 27195.572961438338 28289.50517564142 32689.58026221896 35619.744065468374 0.8424140667866542 0.8197873899037316 0.840803183475639 0.854001751826599 0.741292604977686 0.9299382324265 0.7634971467356256 0.7942085469127986 0.9177376514030019 1.0 15.12038952999218 1.0249525633690821 4.089119837771291 0.9992095835135022 0.8217276368231039 0.5730488517509725 0.04931479537955569 0.11702562419093603 4.760294778868349 0.04461337013725246 0.011416336174535007 10.591380325170817 -1.0249525633690821 -0.1774819466903983 ASPDSRHS(ph)PATISSSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPDSRHSPATISSSTR 17 1 O15119;O15119-2;O15119-3 O15119 TBX3 T-box transcription factor TBX3 1 ASPDS(0.034)RHS(0.951)PAT(0.005)IS(0.001)S(0.002)S(0.003)T(0.004)R;ASPDS(0.004)RHS(0.994)PAT(0.001)ISSSTR 152.38 1.3011e-07 589230000.0 317260.0 530910.0 536470.0 679300.0 675350.0 561240.0 608320.0 529600.0 623060.0 625880.0 True False 315551.9074108999 548581.0184081278 612000.3129191688 765299.3103498011 761351.819386938 522442.7998168523 578893.2375919301 569121.4412543087 469515.2115762597 585935.8025571727 0.5385434821250915 0.9362476503637103 1.0444835598853048 1.3061146067706402 1.299377536010268 0.891638294736009 0.9879806543063129 0.9713034069099689 0.8013082824554772 1.0 19.16038308037106 4.725996219224053 2.687846500113171 1.042774501060814 0.4475724318996871 0.49614773283517144 0.15049873460810548 0.3971746596327103 3.9030299398236483 0.040537618375687874 0.5208991596787006 53210.36269874663 -4.725996219224053 -0.595202069161127 ASPGS(ph)PGRPGSGASQPVCPEGMHHVVLDGHLEAPSCPLAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPGSPGRPGSGASQPVCPEGMHHVVLDGHLEAPSCPLAPR 41 1 Q96JH8-3;Q96JH8-2;Q96JH8-1;Q96JH8 Q96JH8-3 RADIL Ras-associating and dilute domain-containing protein 1 AS(0.173)PGS(0.823)PGRPGS(0.003)GAS(0.001)QPVCPEGMHHVVLDGHLEAPSCPLAPR 137.48 7.0385e-10 133380000.0 8568.6 9089.3 10051.0 8722.2 9024.7 9396.5 12749.0 5160.4 11335.0 10839.0 True False 8522.467609660958 9391.831855902119 11466.093435141878 9826.429625692685 10173.94205141229 8746.942071981763 12132.282164090459 5545.495251980241 8541.641131218345 10147.245740265224 0.8398798873908224 0.9255547856335486 1.1299710018496294 0.9683839218262439 1.002630892345608 0.8620016008159805 1.195623174468755 0.5465025085551241 0.8417694170275497 1.0 13.308800570400122 1.739056323890837 24.999999999997808 0.7582298808144443 0.9869510889507935 0.2551307472008407 0.14692220065678047 0.0841652159296208 3950.6982679304365 0.06373115149817923 0.03534214962811966 54.83480758738752 -1.739056323890837 0.22872120813634922 ASPHATPSTLHFPT(ph)SPIIQQPGPYFSHPAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIR 31 0 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;B1AKN6 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 ASPHATPSTLHFPT(0.843)S(0.157)PIIQQPGPYFSHPAIR 185.28 4.2434e-18 689920000.0 53635.0 64881.0 78156.0 77480.0 89937.0 76848.0 62751.0 61471.0 54941.0 66282.0 True False 53346.23511940868 67040.52486360719 89159.68545586993 87288.96005579653 101389.94385163698 71535.67864073385 59715.49439790107 66058.27816341321 41401.52672168212 62051.82601312475 0.8597045171261402 1.0803956816585425 1.436858367987616 1.4067105783048803 1.6339558457182504 1.152837607479966 0.9623487048595554 1.064566224843102 0.6672088378660311 1.0 15.921186045043164 2.3598370988808126 3.887266290200478 0.943773552260034 1.2958434202104863 0.37072517659708637 0.21927565174122668 0.2696668948497373 7.6286006971938 0.0854107982848293 0.0697811889217747 229.00085239066146 -2.3598370988808126 0.35206986795045225 ASPHATPSTLHFPTS(ph)PIIQQPGPYFSHPAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIR 31 0 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;B1AKN6 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 ASPHATPSTLHFPT(0.276)S(0.723)PIIQQPGPYFSHPAIR 220.79 1.0269e-34 523070000.0 85047.0 163910.0 163980.0 168680.0 157900.0 175870.0 166620.0 144020.0 121470.0 142390.0 True False 84589.11640161007 169365.64526431245 187066.958660289 190034.87070484977 178007.6290533758 163712.52085344918 158559.95404978862 154767.5037187417 91535.34611460897 133302.54829378793 0.6345648863004671 1.2705356906684515 1.4033262008465788 1.425590681777729 1.3353655375069164 1.2281274660454364 1.1894742904714426 1.1610243442431931 0.6866736404233814 1.0 17.02434483457615 1.3731425926175935 5.220569662052784 0.8478324255371013 1.229832915407382 0.29982750217569143 0.2208973733893655 0.2403623910402177 9.243598961288548 0.15563726172699147 0.05531009697093047 23.612533801054397 -1.3731425926175935 0.3820004898702807 ASPITNDGEDEFVPS(ph)DGLDKDEYTFSPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPITNDGEDEFVPSDGLDKDEYTFSPGK 29 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 ASPITNDGEDEFVPS(0.999)DGLDKDEYTFSPGK 113.91 6.8866e-11 0.0 66485.0 75146.0 63216.0 55099.0 63717.0 93882.0 85092.0 90236.0 135210.0 73044.0 True False 66127.05214717792 77647.1891832838 72116.26331667783 62074.52775057226 71830.9822697527 87392.15831445674 80975.77487699308 96969.86852912353 101889.30722117623 68382.26938388537 0.9670204388209599 1.1354871647705473 1.0546047091802482 0.9077576440480116 1.050432852213589 1.2779944143686337 1.184163316113569 1.4180557241344636 1.489995990761707 1.0 16.061334681445494 2.7104989601228993 2.9912758433073074 1.3090688231718919 1.0208142543654277 0.45160902854414964 0.13632011351104734 0.22243997203006233 4.024031955736177 0.0456892040735239 0.044789645115127265 513.4509480917152 -2.7104989601228993 -0.28825456880646416 ASPITNDGEDEFVPSDGLDKDEYTFS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASPITNDGEDEFVPSDGLDKDEYTFSPGK 29 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 ASPITNDGEDEFVPS(0.06)DGLDKDEY(0.001)T(0.078)FS(0.861)PGK;ASPITNDGEDEFVPS(0.085)DGLDKDEY(0.041)T(0.204)FS(0.67)PGK 89.20100000000002 8.1535e-07 0.0 432310.0 384360.0 332230.0 300560.0 312820.0 517210.0 518030.0 485840.0 803410.0 446720.0 True False 429982.4909941563 397153.19024947373 379005.096205073 338610.86518288916 352655.77277059533 481456.49008137983 492970.9098332246 522095.8478455317 605420.3706424467 418209.9471437664 1.0281498417978636 0.9496502724574027 0.9062555752046326 0.8096671719443493 0.8432505615400014 1.151231560534526 1.178764190569953 1.2484060970124484 1.4476469887367929 1.0 18.673867851343537 2.5854967652159995 3.4696883478661236 1.2337786604875847 0.9047056340116194 0.6224623701996879 0.11627945200733686 0.15675375225797017 3.498921906310693 0.039858696797420025 0.036732537662994814 385.0319468092968 -2.5854967652159995 -0.32907302647596526 ASPRPWT(ph)PEDPWSLYGPSPGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPRPWTPEDPWSLYGPSPGGR 22 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 Nuclear factor of activated T-cells, cytoplasmic 4 1 AS(0.003)PRPWT(0.997)PEDPWSLYGPSPGGR 124.28 3.7135e-05 138060000.0 114910.0 131560.0 125140.0 142730.0 106630.0 164940.0 134330.0 105210.0 141090.0 128170.0 True False 114291.33732770132 135938.8950703006 142758.62426362085 160799.60336556326 120208.69845447426 153538.08602699655 127831.9447095673 113061.30444555478 106320.2600091396 119990.08086814237 0.95250654471428 1.132917771925535 1.189753546549393 1.3401074672352848 1.0018219638219275 1.279589820392906 1.065354267491847 0.9422554233445208 0.8860754092329965 1.0 16.872555622988827 1.8761334039788116 3.44077313983627 0.9369834465842661 1.153643752849141 0.4045953112335464 0.11125588672886876 0.2313709098991777 4.6333943163559494 0.05561554160304417 0.030085030099542935 75.18538085024406 -1.8761334039788116 0.21666030626487487 ASPRPYYPQTPNNRPPSTEPSEISLS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPRPYYPQTPNNRPPSTEPSEISLSPER 29 2 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 1 ASPRPYYPQTPNNRPPSTEPS(0.001)EIS(0.02)LS(0.979)PER 112.05 0.00015545 122690000.0 19187.0 24033.0 17782.0 22903.0 24104.0 23500.0 21843.0 25293.0 29215.0 20668.0 True False 19083.699323876113 24832.92387674472 20285.551036085257 25802.51745170251 27173.5015243988 21875.50031304971 20786.370641636826 27180.492095251604 22015.35471094346 19348.950545234973 0.9862911830417499 1.2834248461532336 1.0484057514468628 1.333535759026313 1.4043914919763316 1.1305781293878465 1.0742893054091682 1.4047527813825174 1.1378061388639569 1.0 14.239967698671384 -2.4520693660290798 1.4773994172036689 2.4509349036142686e-05 1.2148365231103317 0.14409062805568806 0.142657327132941 476240.664539545 39823.338081699585 1578652.4170005233 0.03841857691027793 0.0035312676346248833 2.4520693660290798 1.2148120137612957 ASPS(ph)PQPSSQPLQIHR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 AS(0.019)PS(0.981)PQPSSQPLQIHR;AS(0.001)PS(0.999)PQPSSQPLQIHR;ASPS(1)PQPSSQPLQIHR;ASPS(1)PQPSSQPLQIHR;AS(0.006)PS(0.994)PQPSSQPLQIHR;AS(0.003)PS(0.997)PQPSSQPLQIHR 252.55 1.0081e-26 10370270000.0 3572460.0 4127000.0 3654950.0 3776470.0 4034140.0 4120950.0 4147990.0 3922870.0 4745240.0 4236500.0 True False 3553226.2722976194 4264364.700175822 4169535.1906050975 4254570.714789803 4547863.81677888 3836078.4261728562 3947335.876839403 4215614.479330239 3575839.1849583164 3966122.9429498683 0.8958941322315263 1.0751973051556822 1.0512874287008203 1.072727894719622 1.1466774687010413 0.9672111735698518 0.9952631155461631 1.0629056486571764 0.9015956480407862 1.0 21.919297968634503 ASPSCSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPSCSSPTR 10 0 Q8N5I9;J3KN91;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 ASPS(0.033)CS(0.087)S(0.867)PT(0.013)R 64.266 0.076787 157560000.0 186170.0 214050.0 204390.0 218920.0 204490.0 199360.0 212770.0 170280.0 227270.0 215260.0 True False 185167.68140543156 221174.52485404257 233166.33541027244 246635.24955362652 230530.58939281068 185578.71244296123 202477.50223966784 182987.15826431985 171262.35376197542 201521.92250664197 0.918846342384058 1.0975209153572503 1.1570271487589023 1.2238631236038235 1.1439479463342883 0.9208859767445139 1.004741815288083 0.9080260647984278 0.8498447793258362 1.0 17.620577264908466 2.736030034947921 24.91878214252658 0.9348707601814652 1.1167793152805332 0.5088374488875927 0.08404922857233828 178.2115350899838 1754850.9453495394 0.027841153730634057 0.027376753857986706 544.540310871764 -2.736030034947921 0.181908555099068 ASPSS(ph)PGRQDS(ph)DEDDGPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPSSPGRQDSDEDDGPQR 19 1 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 2 AS(0.069)PS(0.438)S(0.493)PGRQDS(1)DEDDGPQR 59.94300000000001 0.037921 167000000.0 76014.0 66824.0 57133.0 64106.0 61764.0 65331.0 73072.0 68363.0 66633.0 57339.0 True False 75604.74906994935 69048.19644403894 65176.8297910617 72221.81302706385 69629.27929609067 60814.82174263191 69537.22819785234 73464.59420028001 50212.18998645543 53679.575929612314 1.4084453492905116 1.2863029420086856 1.2141830232885078 1.3454244333406278 1.2971279688832211 1.132922916946582 1.2954131435209821 1.3685762774395038 0.9354058618551027 1.0 15.712085653795036 1.2336824406553524 24.99998210290144 0.9677027383421223 1.2911604316256386 0.7526263465870731 0.07471395062127935 61.65578325400229 315958.99785576266 0.06518732786281015 0.01832294830122748 17.1270450730361 -1.2336824406553524 0.32345769328351637 ASPSS(ph)PGRQDS(ph)DEDDGPQRVEEVDQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPSSPGRQDSDEDDGPQRVEEVDQGR 27 2 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 2 AS(0.06)PS(0.435)S(0.505)PGRQDS(1)DEDDGPQRVEEVDQGR 120.15 0.00078458 282720000.0 68759.0 86015.0 66730.0 84002.0 79681.0 82045.0 100500.0 69543.0 105040.0 87329.0 True False 68388.80918384313 88877.9572778346 76125.00397244236 94636.64458708094 89827.9030437115 76373.42226315591 95638.4310527173 74732.65179219868 79154.29946388834 81755.58845388147 0.8365031733876079 1.0871178222632558 0.9311290568886879 1.1575556653288075 1.0987371596546411 0.934167605022357 1.169809096373481 0.9140983901590477 0.9681821262718875 1.0 16.31902972984382 4.749979037521736 24.41197609329123 1.0277629368500312 0.8365030156170706 0.2917135870132249 0.08995670469993963 1584.8648673021203 3388267.164435578 0.020667472524578012 0.31804494781976567 56231.41828162006 -4.749979037521736 -0.19125992123296054 ASPSSPGRQDS(ph)DEDDGPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASPSSPGRQDSDEDDGPQR 19 1 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 ASPSSPGRQDS(1)DEDDGPQR;ASPSSPGRQDS(1)DEDDGPQR;ASPSSPGRQDS(1)DEDDGPQR 204.38 2.7939e-16 793800000.0 737290.0 789810.0 755840.0 799710.0 789360.0 841140.0 850200.0 747230.0 900600.0 887070.0 True False 733320.5125606201 816098.3483997728 862255.7021209464 900953.2040038856 889880.3170967235 782993.9716305792 809072.5779205995 802992.0969570563 678659.1974217246 830456.4331411646 0.8830330927618536 0.9827106104927347 1.0382913151259512 1.084889186294903 1.0715556910442499 0.9428477405719398 0.9742504791736255 0.9669286249246988 0.8172122827138881 1.0 19.663544958891947 1.942823106285702 1.4497142855472873 0.9188106363619047 1.01064833984264 0.1872438012120381 0.07013966384094285 0.6640543836920785 2.595931084665736 0.051038828627249615 0.023184772262291653 87.66436801966071 -1.942823106285702 0.09183770348073528 ASPT(ph)SDIESVER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASPTSDIESVER 12 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 AS(0.146)PT(0.427)S(0.427)DIESVER 300.89 1.8458999999999997e-35 1225100000.0 269470.0 290630.0 239610.0 223290.0 226870.0 262900.0 262450.0 224040.0 279640.0 249360.0 True False 268019.20346093155 300303.44386045524 273345.00527254486 251558.4911055608 255760.54973615854 244726.3418000328 249754.29084363836 240759.00245206864 210726.4689840227 233445.63131216346 1.1481011743695315 1.2863956466972368 1.1709150594770736 1.077589200070216 1.095589359709009 1.0483226455104862 1.0698606328154712 1.0313279417515668 0.9026789998149047 1.0 17.832727064759254 3.290572985366753 0.4946505708687135 0.9760227229089092 1.2557871049419853 0.7180887769378372 0.05228595629095024 0.7214320267901154 0.3337862223726022 0.04292418990761774 0.10047349579240837 1952.4188202532566 -3.290572985366753 0.2797643820330761 ASQEPS(ph)PKPGTEVIPAAPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASQEPSPKPGTEVIPAAPR 19 1 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 FLYWCH2 FLYWCH family member 2 1 ASQEPS(0.997)PKPGT(0.003)EVIPAAPR;AS(0.001)QEPS(0.999)PKPGTEVIPAAPR;ASQEPS(1)PKPGTEVIPAAPR 202.73 3.2642000000000004e-16 2114920000.0 1190580.0 893190.0 732780.0 715260.0 741940.0 1038990.0 1081410.0 925900.0 1488800.0 1090370.0 True False 1184170.0495658726 922919.2892052424 835949.0545620609 805811.8426627405 836421.6611770843 967167.0668193838 1029098.0669126267 994995.3596249326 1121905.1888979168 1020781.6530872772 1.1600620426360913 0.9041299737450634 0.8189303285710474 0.7894066671610166 0.8193933135919812 0.9474769299529041 1.0081471035457947 0.974738678556422 1.099064805391828 1.0 19.961242873643563 2.4102976463473778 3.592373059685026 1.013309700750841 0.8876542933839918 0.23771428510877746 0.10141826991199948 0.3532843265997381 9.248370261355308 0.038619032279255935 0.032096182284334376 257.21580228620576 -2.4102976463473778 -0.1256554073668491 ASQKPQPNFPSPEYMIFDHEFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASQKPQPNFPSPEYMIFDHEFTK 23 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 289.38 1.0610999999999995e-61 1541400000.0 862370.0 743470.0 725220.0 633000.0 709390.0 861210.0 876590.0 843020.0 1140600.0 813690.0 False True 857727.0957383132 768215.9495128948 827324.6722747589 713137.735097048 799726.6116160494 801676.579770279 834185.9928010082 905930.4331688224 859514.4132569595 761759.6075649433 1.1259813295694971 1.0084755635292741 1.0860705451676578 0.9361716321198482 1.049841188314608 1.0524010092014924 1.0950777443655546 1.1892602655380202 1.1283276308184695 1.0 19.5389762652119 2.1660615359614632 3.388112443172585 1.1296145845048684 1.0380971016939138 0.1385560917195091 0.06488818172078228 0.2976487146887413 6.854616632327519 0.025475940666297086 0.018060799020624598 146.57555117615107 -2.1660615359614632 -0.09151748281095462 ASQVEPQSPGLGLRPQEPPPAQALAPS(ph)PPSHPDIFRPGSYTDPYAQPPLTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASQVEPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPR 52 2 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 ASQVEPQSPGLGLRPQEPPPAQALAPS(0.937)PPS(0.027)HPDIFRPGS(0.017)Y(0.001)T(0.017)DPYAQPPLT(0.001)PR;ASQVEPQSPGLGLRPQEPPPAQALAPS(0.839)PPS(0.16)HPDIFRPGSYTDPYAQPPLTPR 86.279 2.4698e-07 469700000.0 151085.0 156070.0 138288.0 150984.0 152052.0 164877.0 159403.0 159192.0 131695.0 152898.0 True False 150271.57514712136 161264.6956036927 157757.74837915646 170098.55891926162 171414.92091718773 153479.44106871035 151692.06791140576 171071.7154005965 99240.53187258921 143139.91873743635 1.0498229737210254 1.1266227969536777 1.1021226627111185 1.1883376798003908 1.1975340102827403 1.0722336747322034 1.0597467795804518 1.1951363177339498 0.6933113609951642 1.0 17.127066540165877 1.249405231962281 24.99959335009503 0.8466556415182611 1.1263702086477163 0.6228039721607987 0.08630124714441326 106.4248676342846 245339.9696887966 0.05459583326787257 0.019502463388919655 17.758457160999296 -1.249405231962281 0.2797145671294552 ASQVSNSDHK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASQVSNSDHK 10 0 E9PS17;Q96KG9-2;Q96KG9;E9PK59;Q96KG9-4;E9PPN3;H0YDH0 E9PS17 SCYL1 N-terminal kinase-like protein 0 ;;; 178.67 2.1912e-06 930690000.0 481444.0 679290.0 629780.0 613066.0 567725.0 406966.0 637730.0 588311.0 694410.0 680930.0 False True 478851.9589974567 701899.757010523 718447.5498541085 690680.092740927 640021.4135802897 378833.3983149185 606880.5635348192 632213.7542027257 523281.96011727635 637472.4644264973 0.7511727732871667 1.1010667851230056 1.1270252284550994 1.0834665515510509 1.0039985243222789 0.5942741364613079 0.9520106316761459 0.9917506864731755 0.8208699031228704 1.0 19.282003500654117 2.973659168874992 24.9558288309465 0.8791190745563474 1.0314845111321673 0.18728327843595372 0.1457351661031052 1190.9583281725083 1128338.4700926754 0.04494590034064192 0.047820098777585446 941.1506984525513 -2.973659168874992 0.1523654365758199 ASS(ph)AAAAAALSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSAAAAAALSR 12 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 ASS(1)AAAAAALSR;AS(0.013)S(0.987)AAAAAALSR 214.14 4.4356e-10 595790000.0 389580.0 474900.0 437520.0 507230.0 495050.0 447390.0 437380.0 429900.0 528110.0 492990.0 True False 387482.5445664072 490706.75941688824 499119.013007987 571445.2659925361 558091.683108764 416462.9823427788 416222.25844614394 461981.32098796725 397964.36681144434 461526.9561300268 0.8395664422626727 1.0632244832057882 1.0814514870229364 1.2381622750363077 1.2092287908564368 0.9023589560941008 0.9018373746492089 1.0009844817337439 0.8622776232799827 1.0 18.816055387398634 2.7181939508626414 24.71993584306432 0.9365329111871499 1.093207712574315 0.33393727311512666 0.10766215301347092 872.0069471779713 1058392.6975648147 0.03660109328779683 0.03454609495137656 522.6295371605036 -2.7181939508626414 0.15667480138716505 ASS(ph)DIVSLAGPSAGPGSSEGGCSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSDIVSLAGPSAGPGSSEGGCSR 24 0 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 AS(0.12)S(0.88)DIVSLAGPSAGPGSSEGGCSR 189.51 1.4713e-17 146190000.0 54990.0 47549.0 50140.0 59431.0 55653.0 59071.0 52626.0 61526.0 61574.0 64542.0 True False 54693.93994996335 49131.63972102252 57199.27617530728 66954.95850640227 62740.07966882538 54987.56080817701 50080.279329157136 66117.38254269765 46399.91274932848 60422.87430281374 0.9051860008489598 0.8131298003930704 0.9466493746829858 1.1081061481923633 1.0383498036587733 0.9100454330027855 0.828829808363238 1.0942442461665338 0.7679196543479851 1.0 15.882807193932814 4.10012994638293 6.467591457910794 0.9720713257940061 0.8607948242511834 0.13201460544104282 0.10438227100389133 0.3698180116043711 20.413604291988086 0.025716118867518317 0.05658041576960457 12593.021545054264 -4.10012994638293 -0.11127650154282276 ASS(ph)ESQGLGAGVR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSESQGLGAGVR 13 0 Q9BV36-2;H7C2D8;Q9BV36-3 Q9BV36-2;Q9BV36-3 MLPH Melanophilin 1 ASS(1)ESQGLGAGVR;AS(0.004)S(0.995)ESQGLGAGVR;AS(0.006)S(0.994)ESQGLGAGVR;ASS(1)ESQGLGAGVR;ASS(1)ESQGLGAGVR;AS(0.001)S(0.999)ESQGLGAGVR 285.9 8.108199999999998e-33 9557740000.0 5007380.0 4733500.0 3974680.0 4025250.0 4628580.0 4358920.0 3741330.0 3862610.0 5260480.0 3938090.0 True False 4980420.822452223 4891051.686038826 4534280.395462116 4534846.237281818 5218002.227256966 4057598.1201939876 3560347.5746314703 4150857.5721361553 3964105.190820596 3686757.7246315256 1.3508945242530124 1.3266539467351801 1.2298829307844732 1.2300364103082078 1.415336351611898 1.1005871346209835 0.9657123794288138 1.1258829253693405 1.0752280152113305 1.0 21.813921182133164 2.6002843129307904 5.872423252315316 1.0544128869068279 1.3016427854547044 0.7951272062344641 0.06552620375407502 0.10846165876010354 4.767621323586981 0.021530550609311562 0.02021063629063351 398.36787861781744 -2.6002843129307904 0.24722989854787647 ASS(ph)ESQIFELNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSESQIFELNK 12 0 Q9BV36;Q9BV36-4 Q9BV36 MLPH Melanophilin 1 AS(0.005)S(0.995)ESQIFELNK;ASS(1)ESQIFELNK 319.64 1.2658999999999999e-46 331030000.0 1727130.0 1315760.0 1086630.0 1160000.0 1094200.0 1397770.0 1187080.0 1313490.0 2035420.0 1440830.0 True False 1717831.3239821827 1359554.2762062845 1239618.058842724 1306855.881062522 1233539.8841684863 1301145.4498966602 1129656.4053140252 1411509.2935670733 1533818.0142306506 1348874.995843376 1.273528925419897 1.0079171757174068 0.9190014365027651 0.9688487703379943 0.9144953297894167 0.9646152934157748 0.8374804253879096 1.0464344716276215 1.1371090864291988 1.0 20.363325225072888 4.729111767801615 3.8122516152193597 0.9690977190027912 1.301348477381339 0.578631502746235 0.07621688614697725 0.17178775271670962 4.91042759423377 0.018797394033556923 0.1579550191309607 53593.456513939724 -4.729111767801615 0.3322507583785479 ASS(ph)FADMMGILK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSFADMMGILK 12 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 AS(0.006)S(0.994)FADMMGILK;ASS(1)FADMMGILK;AS(0.003)S(0.997)FADMMGILK;AS(0.024)S(0.976)FADMMGILK 241.84 3.025e-16 366360000.0 2045550.0 895003.0 824589.0 860985.0 607115.0 942232.0 777739.0 949494.0 1911851.0 1210077.0 True False 2034536.986081972 924792.6338142621 940683.9637439266 969985.6127212191 684427.4965974683 877097.719615552 740116.7933185005 1020350.063712838 1440700.938540885 1132848.8498609583 1.7959474349395188 0.8163424749274961 0.8303702332922726 0.8562356865527749 0.6041648863230716 0.7742407292227942 0.6533235156740811 0.9006939132595421 1.2717503652121918 1.0 20.11152395201577 4.739273382042945 24.732432238265126 0.8358263654154777 1.7959477808694173 0.7165680777295842 0.1768568857408773 26.394033512555616 915646.3207567483 0.04216593332699201 0.25304228765846076 54862.220592531456 -4.739273382042945 0.9601214154539396 ASS(ph)FSGISILTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSFSGISILTR 12 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 AS(0.001)S(0.999)FSGISILTR;AS(0.006)S(0.994)FSGISILTR 206.32 9.6032e-08 539970000.0 650990.0 626530.0 458870.0 669670.0 544810.0 599280.0 420560.0 418790.0 687050.0 584920.0 True False 647485.1421717891 647383.6723046167 523474.9074304598 754450.1533371871 614188.3241581367 557853.1841533796 400215.9061047839 450042.23637253034 517735.73349832953 547589.9048247938 1.1824270982113112 1.1822417955490847 0.9559615741965699 1.377764905250728 1.1216209772067505 1.018742637945215 0.7308679407317351 0.8218599948743126 0.9454807857788825 1.0 19.062736324258598 2.5263301649858816 3.2644935069160956 0.8515474854152828 1.1641181460172616 0.5646505725086715 0.11841044869811114 0.16753178241285566 3.5846058613994787 0.041119493186824944 0.036650968582872104 335.99295009322464 -2.5263301649858816 0.3125706606019788 ASS(ph)FSGISVLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSFSGISVLTR 12 0 Q15032-2;Q15032-4;Q15032;Q15032-3;H7C1X4;H7BZ47;H7C207 Q15032-2 R3HDM1 R3H domain-containing protein 1 1 AS(0.002)S(0.998)FSGISVLTR;AS(0.005)S(0.99)FS(0.004)GISVLTR;AS(0.003)S(0.997)FSGISVLTR;AS(0.003)S(0.997)FSGISVLTR 221.52 2.83e-11 1079370000.0 1403110.0 1248740.0 994190.0 1403820.0 1382230.0 1269920.0 899770.0 903840.0 1524060.0 1259450.0 True False 1395555.8116601764 1290303.5560207292 1134163.310345608 1581543.468063091 1558248.7973809228 1182133.4194701302 856244.6876448094 971289.1304065246 1148475.8343577082 1179070.8227306057 1.183606433774872 1.0943393146075144 0.9619127947878512 1.3413473029553902 1.3215904993494625 1.0025974663103203 0.7262029312724706 0.8237750537810101 0.9740516109947979 1.0 20.169218947975605 2.486181620586576 7.401869608843887 0.8571394813002144 1.171948859663819 0.5635793894315926 0.12398932037934621 0.10172722009627132 36.035823426534265 0.04387635410236503 0.03891385071807776 306.3244204958071 -2.486181620586576 0.31480937836360456 ASS(ph)HS(ph)SQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 AS(0.13)S(0.787)HS(0.719)S(0.364)QTQGGGSVTK;AS(0.447)S(0.545)HS(0.536)S(0.442)QT(0.03)QGGGSVTK;AS(0.137)S(0.847)HS(0.702)S(0.313)QT(0.001)QGGGSVTK 164.94 3.8036e-09 5351880000.0 8783810.0 4868050.0 4168783.0 5293250.0 3720032.0 6245080.0 4564510.0 5355150.0 9298700.0 6773560.0 True False 8736518.942933032 5030080.101451635 4755711.41068859 5963374.907270847 4193756.0248428592 5813372.318937035 4343707.213178493 5754778.485900704 7007159.981196291 6341265.601663521 1.377724809483009 0.7932296827516705 0.7499625010882705 0.9404076854479111 0.6613436951359837 0.9167526932497511 0.6849905816969718 0.9075126082703487 1.1050096970166468 1.0 22.596339374203932 4.7422052138765585 24.881690346112627 0.8483047421940834 1.3777250250443585 0.5690106775973186 0.1341316338986774 226.74159108101534 1547897.0125132673 0.03037887213108109 0.22545431774303115 55233.83698874757 -4.7422052138765585 0.5294202828502751 ASS(ph)HSS(ph)QTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 AS(0.012)S(0.949)HS(0.04)S(0.998)QTQGGGSVTK;ASS(1)HS(0.001)S(0.972)QT(0.027)QGGGSVTK;AS(0.025)S(0.974)HS(0.095)S(0.906)QTQGGGSVTK;AS(0.043)S(0.951)HS(0.128)S(0.855)QT(0.024)QGGGSVTK 325.19 1.3879e-58 6770200000.0 23795290.0 12591410.0 10691770.0 13443510.0 9988310.0 16805000.0 11991080.0 14027420.0 23979330.0 18541780.0 True False 23667178.80254524 13010507.470181935 12197078.2814692 15145456.987605857 11260262.073148366 15643309.904714921 11411025.650026023 15074217.310195481 18069945.4280598 17358427.725983508 1.3634402364171656 0.7495210784964556 0.7026603142870838 0.8725131807263226 0.6486913590850794 0.901193941735791 0.657376683542892 0.8684091409748572 1.0409897551384355 1.0 24.049132942947164 -0.6949615408471529 6.4591993353140005 1.0000000005738343 0.8457237450914133 0.02750178117919133 0.2035895132015009 1.3777304530352875e-09 2.1329742843766485e-10 0.18491584982507658 0.04358508346199412 0.20185451089819567 0.6949615408471529 -0.15427625548242097 ASS(ph)HSS(ph)QTQGGGSVTKK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 AS(0.108)S(0.892)HS(0.009)S(0.933)QT(0.057)QGGGSVTKK;AS(0.091)S(0.905)HS(0.321)S(0.679)QT(0.004)QGGGSVTKK;AS(0.369)S(0.45)HS(0.186)S(0.993)QT(0.002)QGGGSVTKK;AS(0.099)S(0.901)HS(0.002)S(0.997)QT(0.001)QGGGSVTKK 217.86 1.692e-14 1749380000.0 2558660.0 1481490.0 1153330.0 1556520.0 1171650.0 1937180.0 1440200.0 1594970.0 3526330.0 2324210.0 True False 2544884.458853849 1530800.499070385 1315708.839075932 1753575.27240641 1320852.682586369 1803267.3062312186 1370532.0239017238 1713994.7604935535 2657313.2219011215 2175876.927943708 1.1695902586084537 0.7035326674092057 0.6046798061870762 0.8059165708713175 0.6070438385661033 0.8287542751489072 0.6298757095590568 0.7877259685424157 1.2212608111123227 1.0 21.053165526433272 1.2981717065227083 7.264386640252839 1.1089336319432928 0.7513927995456486 0.41062381188758623 0.1639119028932342 0.17318886756163218 17.224667025500803 0.10655970414864614 0.0382410126071425 19.86880312729756 -1.2981717065227083 -0.3575408323976441 ASS(ph)HSSQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 10 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.133)S(0.849)HS(0.011)S(0.006)QTQGGGSVTK;AS(0.119)S(0.864)HS(0.017)SQTQGGGSVTK;AS(0.156)S(0.806)HS(0.031)S(0.006)QTQGGGSVTK;AS(0.019)S(0.77)HS(0.189)S(0.019)QT(0.003)QGGGSVTK;AS(0.025)S(0.529)HS(0.187)S(0.259)QTQGGGSVTK;AS(0.006)S(0.954)HS(0.039)S(0.001)QTQGGGSVTK;ASS(0.723)HS(0.238)S(0.038)QTQGGGSVTK;AS(0.088)S(0.909)HS(0.001)S(0.001)QT(0.001)QGGGSVTK;AS(0.03)S(0.965)HS(0.005)SQTQGGGSVTK;AS(0.019)S(0.975)HS(0.003)S(0.003)QTQGGGSVTK 343.69 1.6405999999999996e-72 33827107000.0 15117853.0 15919350.0 13890654.0 15576312.0 13527713.0 17029317.0 11977171.0 15235742.0 18936195.0 19771008.0 True False 15036460.159199368 16449215.941299716 15846337.343471037 17548271.50212475 15250387.065513168 15852120.398490328 11397789.48149358 16372710.433570245 14269623.474262994 18509205.342628438 0.8123774025332675 0.8887046005922051 0.8561327755641369 0.9480834631894991 0.823935268057678 0.8564452176659041 0.6157903200329946 0.8845712244524272 0.7709473859149809 1.0 24.14173962139414 2.8646046076431575 2.906563787818851 0.8060243665296143 0.8754480930705985 0.036470006625933915 0.09712641912162702 0.6463367120868263 10.513037712779608 0.02991975315115863 0.03214833374441032 732.1576553125088 -2.8646046076431575 0.06942372654098417 ASS(ph)HSSQTQGGGSVTKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.164)S(0.792)HS(0.033)S(0.009)QT(0.002)QGGGSVTKK 54.223 0.078877 364740000.0 12351.0 16510.0 10621.0 12359.0 12424.0 20732.0 10828.0 12559.0 25576.0 23035.0 True False 12284.503588325095 17059.525369494237 12116.344480613063 13923.648132803177 14006.122757182664 19298.84563787857 10304.208273023103 13496.216353309805 19273.13750084168 21564.88657874431 0.5696530581539652 0.7910788358288499 0.5618552379754078 0.6456629429494514 0.6494874297640855 0.8949198766897624 0.4778234392931874 0.6258422136387451 0.8937277472091358 1.0 14.396396507738096 1.1169146787254014 4.126992831887663 0.99308719566517 0.6517012670085458 0.5342975639564951 0.11193595296776139 0.15114546397503378 4.268634090386878 0.10299004900799695 0.0265540153660855 13.089247470431 -1.1169146787254014 -0.3413859286566242 ASS(ph)KGGGGYTCQSGSGWDEFTK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASSKGGGGYTCQSGSGWDEFTK 22 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 AS(0.004)S(0.995)KGGGGYT(0.001)CQSGSGWDEFTK;AS(0.204)S(0.796)KGGGGYTCQSGSGWDEFTK;AS(0.15)S(0.847)KGGGGYT(0.003)CQSGSGWDEFTK 207.99 4.498e-23 2074680000.0 1650160.0 1275290.0 1080310.0 1252760.0 1203690.0 1580480.0 1545910.0 1152700.0 2067370.0 1487470.0 True False 1641275.7219100131 1317737.2567209157 1232408.25777715 1411359.2875516252 1356972.786670412 1471225.1376497357 1471128.427350309 1238720.3272919992 1557894.3648387184 1392538.391112863 1.1786215248244385 0.9462843287701611 0.8850084605511356 1.013515531463173 0.974459875096134 1.0565059800426682 1.0564365311139752 0.8895412400817629 1.118744283662951 1.0 20.409285671327293 ASS(ph)LEDLVLK ddPTM_BT-474_Trastuzumab_2h_R1 8 ASSLEDLVLK 10 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 AS(0.001)S(0.999)LEDLVLK;ASS(1)LEDLVLK;AS(0.003)S(0.997)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK 289.59 4.6620999999999994e-32 9518400000.0 10577820.0 9735050.0 8816260.0 8285910.0 8447210.0 10790520.0 10986030.0 10102080.0 13903520.0 10518030.0 True False 10520870.19242628 10059075.254288014 10057512.775694355 9334905.356426498 9522912.122963704 10044596.750551874 10454593.75818988 10855948.506922832 10477183.793623026 9846760.320461461 1.068460067070387 1.0215619073600648 1.021403227901765 0.9480179320531105 0.9671111932292284 1.02009152489264 1.0617292813013177 1.1024893623504055 1.0640234404661553 1.0 23.231217711315097 2.2828208488021557 3.8361021532200144 1.070176378241588 1.003252875712777 0.2569099813570568 0.03917672793269644 0.2423121271159265 7.449347109189389 0.015285603642693364 0.012026587926773332 191.7877432167255 -2.2828208488021557 -0.06692350252881107 ASS(ph)LGEIDESSELR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSLGEIDESSELR 14 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 ASS(1)LGEIDESSELR;AS(0.001)S(0.999)LGEIDESSELR;ASS(1)LGEIDESSELR;ASS(1)LGEIDESSELR 388.0 6.103499999999996e-114 4301130000.0 3398300.0 3958740.0 3488980.0 3649860.0 3529170.0 3696320.0 3199140.0 2995240.0 3418530.0 3320770.0 True False 3380003.9303866248 4090504.2677911315 3980198.057242194 4111931.9017714257 3978588.8804705697 3440802.0986013557 3044385.376298403 3218760.018320537 2576079.0874551283 3108835.615545768 1.0872250412613895 1.3157673076493714 1.2802857884602095 1.3226598026636287 1.2797681744816582 1.1067816134746995 0.9792686885967593 1.03535870543463 0.8286314897363551 1.0 21.567942903305557 2.4748429933156593 2.311922069096317 0.9674852772425843 1.2661411073702469 0.7519752867982523 0.07999389777358054 0.14706203560153705 1.5920412275399465 0.03096442879489721 0.025794659179201096 298.4303534726949 -2.4748429933156593 0.2986558301276626 ASS(ph)LNENVDHSALLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSLNENVDHSALLK 15 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 AS(0.122)S(0.878)LNENVDHSALLK;AS(0.004)S(0.996)LNENVDHSALLK;AS(0.025)S(0.975)LNENVDHSALLK;AS(0.145)S(0.855)LNENVDHSALLK 353.45 1.2063999999999999e-82 5905890000.0 11378700.0 3159650.0 2402890.0 4550730.0 2154720.0 2653420.0 2712110.0 2903240.0 4398610.0 4111630.0 True False 11317438.343492415 3264817.040201239 2741196.0257057073 5126851.951403137 2429110.819973972 2469995.320878823 2580914.878033682 3119894.5111540025 3314631.503854289 3849222.253256457 2.9401883286728423 0.848175767829252 0.7121428292135236 1.3319189213004785 0.6310653581821457 0.6416868547377843 0.6705029505246723 0.8105259467713405 0.8611172038845245 1.0 21.876135543776066 4.7384597798450505 7.158233039541037 0.8179974449438536 2.968662838577619 0.9092777811265468 0.1995367432982359 0.027466041381898086 11.636405561774646 0.0473435717923827 0.28636144213712406 54759.53856246037 -4.7384597798450505 2.1506653936337656 ASS(ph)LNFLNK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSLNFLNK 9 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 ASS(1)LNFLNK;AS(0.006)S(0.994)LNFLNK;AS(0.004)S(0.996)LNFLNK;AS(0.003)S(0.997)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK 205.12 1.6222e-05 6604020000.0 19701200.0 7458640.0 6232260.0 9679760.0 4913000.0 7202100.0 6725690.0 7982780.0 14724830.0 11371680.0 True False 19595130.928209096 7706896.323556902 7109708.036224983 10905216.623511842 5538641.428367551 6704235.778919795 6400342.680069146 8578495.57933549 11096092.949113173 10645929.646614946 1.840621869452209 0.7239289173780554 0.6678334605081327 1.0243555035120244 0.5202590672885629 0.6297463914813226 0.6012009183344775 0.8058005138201498 1.0422850157234849 1.0 23.34379860160156 4.7397057812659416 24.574284291934607 0.7589625228743835 1.8406223132809745 0.7598449985726499 0.17863221723056913 34.765897722417506 745929.3209756695 0.041614318333445775 0.25630503020303613 54916.87059591385 -4.7397057812659416 1.081659790406591 ASS(ph)LNVLNVGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSLNVLNVGGK 12 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 AS(0.003)S(0.997)LNVLNVGGK;ASS(1)LNVLNVGGK;AS(0.012)S(0.988)LNVLNVGGK;ASS(1)LNVLNVGGK;ASS(1)LNVLNVGGK;ASS(1)LNVLNVGGK 268.21 5.7279e-22 2331390000.0 10288200.0 3329930.0 2785020.0 4028970.0 2376390.0 2865620.0 3018050.0 3510300.0 5450090.0 4768260.0 True False 10232809.474326465 3440764.707064803 3177126.6081722034 4539037.188900393 2679009.180532944 2667526.434343896 2872055.3914293856 3772256.410942225 4106988.3469644315 4463945.56448723 2.2923239825622517 0.7707900236144661 0.7117305895142916 1.016821805581715 0.6001437835276738 0.5975714523862731 0.6433894298079991 0.8450498234011375 0.9200354904946513 1.0 22.089888003676947 4.738639417808201 24.271959508719448 0.7741344799293612 2.292324603531137 0.9027751292061892 0.14787678342547175 1.1472157716452938 352405.7773359109 0.03514615386924742 0.2025847294429705 54782.193528355885 -4.738639417808201 1.5181901236017756 ASS(ph)LPGSLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSLPGSLQR 10 0 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 AS(0.05)S(0.95)LPGSLQR 88.24 0.012933000000000002 145800000.0 202320.0 223010.0 231790.0 217540.0 222010.0 263780.0 235480.0 152870.0 241260.0 228350.0 True False 201230.73159986536 230432.75303760797 264424.0172452032 245080.54169512104 250281.65754363517 245545.50947132986 224088.932779043 164277.93565813117 181804.70571837114 213776.5074997293 0.9413135893808171 1.0779142934491983 1.2369180334070993 1.1464334625049077 1.1707631510630423 1.1486084806191381 1.048239282229488 0.7684564481826385 0.8504428659851754 1.0 17.705743794399602 1.9153909538080582 4.828440111233854 0.8548740046954129 1.1254777764290649 0.600210389412575 0.08975386449260042 0.13816902628533603 5.414623831670981 0.04167462854435109 0.024635882829008287 82.29831696665927 -1.9153909538080582 0.270603771733652 ASS(ph)LSESSPPK ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 AS(0.001)S(0.989)LS(0.01)ESSPPK;AS(0.001)S(0.997)LS(0.002)ESSPPK;ASS(1)LSESSPPK;ASS(1)LSESSPPK;ASS(0.991)LS(0.009)ESSPPK;ASS(0.947)LS(0.053)ESSPPK 244.71 7.133899999999998e-16 9643040000.0 17077800.0 10894730.0 9279840.0 11514490.0 12290450.0 14280940.0 9959430.0 10096620.0 19060960.0 13673280.0 True False 16985855.022321943 11257354.502046645 10586360.810184771 12972223.253392728 13855565.956295544 13293732.23151678 9477654.322182719 10850081.053997504 14363641.811778363 12800639.564116042 1.3269536211251733 0.8794368785763111 0.8270181155527146 1.0134043059659055 1.0824120065951057 1.0385209399054578 0.7404047488964045 0.8476202301964249 1.1221034495841813 1.0 23.609712558259282 ASS(ph)PAQCVTPVQTVV ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 1 AS(0.024)S(0.976)PAQCVTPVQTVV 141.38 5.007e-06 115740000.0 202820.0 212490.0 193980.0 200670.0 197850.0 222950.0 219780.0 174250.0 214920.0 229720.0 True False 201728.03965542043 219562.6011970827 221290.6978956147 226074.80142484143 223045.02475117423 207537.9912678484 209148.40175886746 187253.4198235713 161955.84578045426 215059.0729268135 0.9380122257109806 1.0209408894448353 1.0289763407048718 1.0512218728933918 1.0371337591838239 0.9650278337174615 0.9725160576231188 0.8707069052013225 0.7530760901009242 1.0 17.714373471519917 1.8823149751410453 2.2256072146398473 0.8577224525943513 1.0123366118372983 0.45228803368990345 0.06437265574933485 0.23665020661572053 2.1628548554008113 0.036868666349580546 0.017872179893674022 76.26319136854976 -1.8823149751410453 0.15461415924294697 ASS(ph)PELPVSVENIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPELPVSVENIK 14 0 Q969R5 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 AS(0.019)S(0.981)PELPVSVENIK 192.39 3.9704e-07 80878000.0 284010.0 257170.0 238150.0 194890.0 219430.0 299730.0 235820.0 259690.0 307900.0 272850.0 True False 282480.9217164773 265729.74798745237 271679.44996309193 219563.05401747816 247373.10983649333 279010.3705885269 224412.48568011684 279069.3864791004 232022.1706486217 255436.47940136245 1.1058754112901017 1.0402967838039934 1.0635890793664096 0.8595602888516285 0.9684329756510647 1.092288663085288 0.8785451718017997 1.092519702483857 0.9083360810185991 1.0 17.96260504839389 3.948042075095917 24.999205419459187 0.9797155743941611 1.0678008393749554 0.25583074379653803 0.07609871730330274 477.0549036463942 229531.99828858327 0.01886733954105335 0.034013936495244666 8872.419651966353 -3.948042075095917 0.08808526498079428 ASS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSPFR 6 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 AS(0.098)S(0.902)PFR;AS(0.044)S(0.956)PFR 120.92 0.020849 2928200000.0 3167100.0 3986700.0 3620400.0 3618900.0 2984200.0 2991300.0 3542900.0 3168900.0 4370500.0 3529500.0 True False 3150048.6854978916 4119394.899488954 4130120.850919076 4077052.3689458244 3364220.181260822 2784518.471762789 3371516.3918076823 3405379.4093481493 3293448.836699582 3304244.2882430246 0.9533340790528766 1.2466980465537467 1.2499441598838918 1.2338834581488305 1.0181511679482054 0.8427096270304545 1.0203593008555758 1.03060764044141 0.9967328530817609 1.0 21.655888920854064 3.1489728976902898 5.8157271963148185 0.9827696524728858 1.1814068362353476 0.48735110894471734 0.09377805859193473 0.17325211681596084 8.976728471072912 0.027651929575673636 0.03337527409535676 1409.2008539710096 -3.1489728976902898 0.19863718376246176 ASS(ph)PFRR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASSPFRR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 AS(0.343)S(0.657)PFRR;AS(0.189)S(0.811)PFRR;AS(0.026)S(0.974)PFRR 109.11 0.00435 23785500000.0 4663190.0 6141280.0 5352230.0 5607210.0 5456560.0 5425090.0 5766700.0 5174860.0 6733080.0 5984770.0 True False 4638083.90316912 6345688.792317844 6105777.461582863 6317082.211079813 6151420.572435016 5050066.297588201 5487742.690066704 5561034.330606636 5073802.652649637 5602816.85478062 0.8278128704513447 1.1325890095628177 1.0897692392663327 1.127483259726711 1.097915697027701 0.901344168206965 0.9794613731455939 0.9925425861210628 0.9055806720364954 1.0 22.41772090375946 2.74756328895758 24.908674541588404 0.9604074950213765 1.0653639867631877 0.24044041494658186 0.0871329527260818 859.7759234868488 2378835.32098777 0.026199286886754252 0.02742889333237475 559.1950121214282 -2.74756328895758 0.10495649174181121 ASS(ph)PGHPAFLEDGS(ph)PSPVLAFAAS(ph)PRPNHSYIFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPGHPAFLEDGSPSPVLAFAASPRPNHSYIFK 34 1 Q9C073;D6RJ87;Q9C073-2 Q9C073 FAM117A Protein FAM117A 3 AS(0.471)S(0.529)PGHPAFLEDGS(0.866)PS(0.134)PVLAFAAS(0.996)PRPNHS(0.003)Y(0.001)IFK 149.9 6.477199999999999e-11 78004000.0 36321.0 33265.0 28907.0 28355.0 21867.0 34835.0 31294.0 33455.0 47596.0 35676.0 True False 36125.45177164247 34372.20541588287 32976.85433585176 31944.740092696356 24651.632834136617 32426.93844276962 29780.189665310783 35951.58198104779 35866.6035537246 33399.12713623971 1.081628619343305 1.0291348416284605 0.9873567713711369 0.9564543397313737 0.7380921283834503 0.9708917933841685 0.8916457470230652 1.0764228009431582 1.073878470159406 1.0 15.027522778875323 1.6934636523017768 8.301432221852817 1.0553581455831278 0.9481231677991101 0.20852531769999572 0.08819082571340894 0.1880409168552043 24.683239874067 0.04563596648271065 0.024137034965392084 49.37005969066433 -1.6934636523017768 -0.1072349777840177 ASS(ph)PGHPAFLEDGSPS(ph)PVLAFAASPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSPGHPAFLEDGSPSPVLAFAASPR 26 0 Q9C073;D6RJ87;Q9C073-2 Q9C073 FAM117A Protein FAM117A 2 AS(0.167)S(0.833)PGHPAFLEDGS(0.007)PS(0.993)PVLAFAASPR;AS(0.13)S(0.87)PGHPAFLEDGSPS(1)PVLAFAASPR 247.1 9.512699999999999e-46 159685000.0 76150.0 91428.0 85308.0 77629.0 50378.0 93587.0 109223.0 79139.0 71625.0 102115.0 True False 75740.0168610603 94471.12571060682 97318.62488957153 87456.82344051929 56793.33968619995 87117.55097010148 103939.46621762119 85044.7540396994 53973.97847582834 95597.93327495003 0.7922767184016812 0.9882130551807811 1.017999255377965 0.9148401063125913 0.5940854340737277 0.9112911543761302 1.087256415038597 0.8896087093755621 0.564593570455057 1.0 16.544691808569173 3.462815177475797 24.96382426523289 0.8506512366681905 0.9430433855814606 0.06316535161124204 0.16171772218983604 714.9835348526137 1247628.5311291618 0.04614700648445942 0.06250991782013346 2902.787053672423 -3.462815177475797 0.09239214891327008 ASS(ph)PIKQSHEPVPDTSVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPIKQSHEPVPDTSVEK 19 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 AS(0.18)S(0.815)PIKQS(0.005)HEPVPDTSVEK 120.25 2.6462e-05 312250000.0 155750.0 122950.0 111740.0 120150.0 127770.0 173940.0 173180.0 163840.0 281860.0 199970.0 True False 154911.4593054516 127042.3164251555 127472.02073850897 135360.9776807429 144040.75214787744 161915.93721071788 164802.62178815505 176066.57276266237 212399.37973049883 187207.74339706966 0.8274842508885047 0.6786167821899192 0.6809121162693544 0.7230522371803861 0.7694166359474001 0.864899786048339 0.8803194718212425 0.9404876612887921 1.1345651407164148 1.0 17.51428058419526 2.0848434835149425 0.9045425948349963 1.0545351932098253 0.7203540136281174 0.8200180466133613 0.059072804396615546 0.2287304996387633 0.34767573783932476 0.04736329985070649 0.024340922751170006 121.57477752736767 -2.0848434835149425 -0.3341811795817079 ASS(ph)PPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSPPDR 7 0 Q9NWB6;Q9NWB6-2 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 1 AS(0.182)S(0.818)PPDR;AS(0.299)S(0.701)PPDR;AS(0.014)S(0.986)PPDR;AS(0.005)S(0.995)PPDR 109.02 0.0074706 716204000.0 1773160.0 1794360.0 1614170.0 1565660.0 1624170.0 1177540.0 1644600.0 1615860.0 1914620.0 1783540.0 True False 1763613.503576595 1854084.187886476 1841431.1053828448 1763872.3954692646 1830998.4222901957 1096139.4314310031 1565044.4150178994 1736443.6783708218 1442787.5555935826 1669712.9502345813 1.056237542703865 1.1104209185333276 1.1028429198708307 1.0563925944405324 1.0965947302696282 0.6564837574488503 0.9373134554643199 1.0399653893364518 0.8640931696618167 1.0 20.671168671503548 ASS(ph)PPDRIDIFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASSPPDRIDIFGR 13 1 Q9NWB6;Q9NWB6-2 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 1 AS(0.091)S(0.909)PPDRIDIFGR;AS(0.161)S(0.839)PPDRIDIFGR;AS(0.087)S(0.913)PPDRIDIFGR 204.23 4.8163e-08 13222700000.0 2499730.0 3593150.0 3199390.0 3818400.0 3489700.0 3315260.0 3485900.0 3098020.0 4502360.0 3625500.0 True False 2486271.731426109 3712745.8256449597 3649836.3024035976 4301809.048490632 3934092.609927583 3086083.8794826004 3317273.6995688267 3329209.9838268044 3392813.7065330627 3394117.486053286 0.7325237684442004 1.0938766383016922 1.0753417692230989 1.2674308023122733 1.159091465187372 0.9092448603101037 0.9773597152130953 0.9808764715737767 0.9996158708337055 1.0 21.694605073395348 2.73320133277697 24.824724720494668 0.9733067533472953 1.0789690294084204 0.10831650852860564 0.12952973386794314 886.0385634129323 4104207.8936371896 0.04259718459957832 0.0412036231763684 541.00506711479 -2.73320133277697 0.1056622760611251 ASS(ph)VTTFTGEPNTCPR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSVTTFTGEPNTCPR 16 0 P52943;H0YFA4;P52943-2 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 1 AS(0.001)S(0.999)VT(0.001)TFTGEPNTCPR;AS(0.001)S(0.921)VT(0.078)T(0.001)FTGEPNTCPR;AS(0.002)S(0.998)VTTFTGEPNTCPR;AS(0.001)S(0.89)VT(0.109)TFTGEPNTCPR;ASS(0.998)VT(0.001)TFTGEPNTCPR;AS(0.001)S(0.999)VTTFTGEPNTCPR 407.58 7.177999999999995e-140 6061560000.0 5512070.0 3147670.0 1973340.0 3333970.0 2062630.0 2923680.0 1845180.0 2134000.0 4398400.0 2809230.0 True False 5482393.627568547 3252438.2931433013 2251169.1194212395 3756050.2601603586 2325293.704334168 2721572.8832024354 1755921.5941278879 2293249.9162324322 3314473.255540433 2629942.5362971933 2.084605861878427 1.2366955734791627 0.855976542586651 1.4281871973707303 0.884161411225375 1.0348411973419969 0.6676653842787469 0.871977195160011 1.2602835270336437 1.0 21.326599846596594 4.720958816297736 2.675105512073842 0.984072410491479 2.2798633550956904 0.7148393886711792 0.2047609542714362 0.226789768731961 2.216900565302234 0.05113404545946827 0.6420496428516334 52596.73870754859 -4.720958816297736 1.2957909446042115 up ASSDIVSLAGPSAGPGS(ph)SEGGCSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ASSDIVSLAGPSAGPGSSEGGCSR 24 0 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 ASSDIVSLAGPSAGPGS(0.976)S(0.024)EGGCSR;ASSDIVSLAGPSAGPGS(0.966)S(0.033)EGGCSR;ASSDIVSLAGPSAGPGS(0.918)S(0.082)EGGCSR 402.2 1.1454999999999991e-131 211110000.0 218596.0 354884.0 296416.0 303394.0 331642.0 325472.0 343052.0 275891.0 280961.0 309885.0 True False 217419.10342429896 366696.0994080919 338148.79630594084 341803.64929231256 373874.6429038616 302972.88671867753 326457.2641740967 296479.38736611116 211721.92623451588 290107.87399410404 0.7494422692874501 1.2639991268059978 1.1655967542363677 1.178195009278718 1.288743520665213 1.0443456171921586 1.1252961171978786 1.02196256614578 0.7298041356809873 1.0 18.146229927566942 1.4874985239342942 3.910543547566625 0.8634429198536642 1.128605290604264 0.29014523809596593 0.1539741834350724 0.21922229883299285 6.897024371073386 0.09841305026312921 0.03786883491242716 30.725469223789506 -1.4874985239342942 0.2651623707505999 ASSDLCDLVSNQS(ph)AEGLLEDCDLFGPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSDLCDLVSNQSAEGLLEDCDLFGPAR 28 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 ASSDLCDLVS(0.012)NQS(0.988)AEGLLEDCDLFGPAR 157.73 1.4798e-09 40105000.0 20969.0 24188.0 21412.0 20886.0 20602.0 22607.0 23356.0 20303.0 20143.0 19444.0 True False 20856.10523387492 24993.082958045245 24426.62348355964 23530.165458510182 23225.54258237905 21044.231301153817 22226.181051415548 21818.112956545017 15179.027552371506 18203.067273154084 1.1457467536052863 1.3730149201231097 1.3418960176884074 1.2926483820236445 1.2759136816811154 1.15608160895993 1.2210129599528954 1.1985954141213557 0.8338719691904651 1.0 14.151893949035104 1.3539130662430379 4.383080936147163 0.9197118093483686 1.2594045821049324 0.7435731303861968 0.07864187517736616 0.10347621542592451 3.0273487779730384 0.05990240040297675 0.020396353956930298 22.58983538865152 -1.3539130662430379 0.33969277275656384 ASSHS(ph)S(ph)QTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 AS(0.181)S(0.555)HS(0.697)S(0.566)QT(0.001)QGGGSVTK 111.45 0.00043106 187210000.0 282950.0 193760.0 135280.0 187760.0 152780.0 255880.0 162140.0 180840.0 309350.0 231210.0 True False 281426.62863870006 200209.18446960681 154326.2481251612 211530.3967485335 172235.6274019935 238191.6178767301 154296.66876505033 194335.19908691317 233114.83757762652 216453.97985116023 1.3001684183964501 0.9249503502189066 0.7129748699066666 0.9772534415582826 0.7957147635743519 1.1004261415776104 0.7128382156389502 0.8978130095854253 1.0769718243939093 1.0 17.723700801477015 4.732426610363266 5.264905861756837 0.8957929524840427 1.3156739149792929 0.4436018403414298 0.1300968335893602 0.12284829374516694 11.942431287190765 0.029040032803834433 0.1858187548644847 54004.08477736354 -4.732426610363266 0.4198809624952502 ASSHS(ph)SQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.001)S(0.164)HS(0.415)S(0.415)QT(0.005)QGGGSVTK 250.47 7.7467e-21 6449800000.0 2059300.0 2027700.0 1807000.0 1870100.0 1763500.0 2313100.0 1585400.0 1948900.0 2551500.0 2627700.0 True False 2048212.9576097382 2095190.7687294665 2061409.89327444 2106854.4682543282 1988071.2719165832 2153200.8414517147 1508708.1451838573 2094336.8143136767 1922717.013348354 2459997.936312845 0.832607591809484 0.8517042790165231 0.8379722043036236 0.8564456242642935 0.8081597315875775 0.8752856291737499 0.6132965084699122 0.8513571427839336 0.7815929375250649 1.0 21.230225674615326 ASSHSSQT(ph)QGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.18)S(0.18)HS(0.18)S(0.18)QT(0.28)QGGGSVTK 99.409 0.0088448 105210000.0 208900.0 520700.0 324960.0 442780.0 313750.0 199970.0 158450.0 121530.0 68147.0 265930.0 True False 207775.30561097167 538031.1847302025 370711.5433970453 498835.90260074387 353704.2027580536 186146.54457874678 150785.1681622195 130599.1857168356 51353.08497301601 248958.1197258728 0.8345793494895952 2.1611312992025624 1.4890518284972385 2.00369404761737 1.420737765643139 0.7477022431873774 0.6056647934530061 0.5245829533924744 0.20627198273171718 1.0 17.925543543856513 2.7396054561915513 2.7476027781609695 0.5537185236414951 1.658379972453653 0.6258240243726467 0.3758679595614587 0.15965088668472727 2.4117079457388475 0.11966603758701523 0.11947095548089248 549.0418587843468 -2.7396054561915513 1.1046614488121578 ASSHSSQTQGGGS(ph)VTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 ASSHSSQTQGGGS(0.999)VT(0.001)K;ASSHSSQTQGGGS(1)VTK 153.56 2.8303e-07 303580000.0 286370.0 288750.0 328000.0 377720.0 335580.0 425130.0 438000.0 413410.0 391380.0 503980.0 True False 284828.2157386983 298360.869196939 374179.5489728919 425539.3132714958 378314.1238615067 395741.7637483755 416812.2666775133 444260.7534534445 294929.6432233116 471815.5649210144 0.60368550110546 0.632367584666027 0.7930631729699982 0.9019187684974623 0.8018262897385325 0.8387636889737323 0.8834220353609803 0.9415983415634396 0.6250951964093959 1.0 18.84786348746938 4.180334518720979 2.9670425820893946 0.8575514836913409 0.6068672724767314 0.5017703735742204 0.09367807208521498 0.1900618041570146 3.3333366950562167 0.022892104037975043 0.06494965054480493 15147.275299353101 -4.180334518720979 -0.2506842112146095 ASSHSSQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;; 211.29 7.472e-12 908210000.0 341069.0 789920.0 926000.0 1028020.0 1055980.0 978190.0 1101000.0 1008540.0 683420.0 1026500.0 False True 339232.72240032814 816212.009683276 1056372.7510637138 1158167.2265947354 1190452.7937161727 910570.0277115791 1047740.4237715588 1083802.3760623499 515000.2983588213 960987.8911691345 0.3530041590717848 0.8493468202708312 1.0992570882225523 1.2051839958001065 1.2387802225768652 0.9475353811209658 1.0902743243693545 1.1278002418363458 0.535907167084357 1.0 19.87415872701721 4.682025223131502 2.559429858599532 1.0517910552564331 0.25204540808779274 0.541110816865808 0.18703418536573876 0.30578558301086545 2.7969184965227956 0.045706337752258894 0.49856332206835546 48086.72756438904 -4.682025223131502 -0.7997456471686404 ASSIIDELFQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSIIDELFQDR 12 0 E7ERK6;H0YC35;H0YLK8;P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 E7ERK6 CLU Clusterin;Clusterin;Clusterin beta chain;Clusterin alpha chain 0 178.1 5.2172e-05 55131000.0 24331.0 34517.0 30796.0 29529.0 31775.0 31915.0 28128.0 26843.0 33269.0 28854.0 False True 24200.004599428223 35665.87747903287 35131.80911636945 33267.368372323435 35821.35790481964 29708.791169828975 26767.341180605275 28846.160965992116 25070.300731760304 27012.51301684775 0.89588127488674 1.320346517067405 1.3005753701796525 1.2315539969041207 1.3261023838277393 1.0998158946300016 0.99092376795563 1.0678814276924444 0.9280995335800084 1.0 14.721340241843382 2.4990748946166876 4.786676192744607 1.0114681400746826 1.2264058271094214 0.41922960908664786 0.12019605911466101 0.18828964133761383 11.303490483656216 0.03999848569783541 0.035736497779886967 315.55487547127643 -2.4990748946166876 0.2149376870347388 ASSLSES(ph)SPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 ASSLS(0.002)ES(0.499)S(0.499)PPK;ASSLS(0.004)ES(0.498)S(0.498)PPK 130.71 0.00022916 189566000.0 669690.0 594110.0 489950.0 482430.0 470840.0 803510.0 786990.0 651850.0 989180.0 741260.0 True False 666084.4634495535 613884.5922029205 558930.7012782572 543505.5885353378 530798.6831126761 747965.2449590885 748920.2871062482 700494.3570272306 745409.8433329123 693952.1521753853 0.959842060236469 0.8846209213106828 0.8054311807033584 0.7832032609619684 0.7648923365231171 1.0778340302200724 1.0792102665270942 1.009427458119896 1.074151641429771 1.0 19.40447666721293 2.7314677413831903 24.927189501231435 1.0480141317981344 0.8370680344192402 0.7682337973308403 0.05725929521951132 268.3074780178489 942936.8851972701 0.01967826390413471 0.018915645633421088 538.8498190866436 -2.7314677413831903 -0.21094609737889425 ASSLSESS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 ASSLS(0.001)ES(0.066)S(0.933)PPK 76.165 0.037867000000000005 977280000.0 3044100.0 2699500.0 2535900.0 2401100.0 2618300.0 3432400.0 3305800.0 3077300.0 4664300.0 3384800.0 True False 3027710.903831305 2789351.2256177915 2892932.6775620645 2705079.0138096674 2951724.9851200404 3195126.267000505 3145885.8246176373 3306943.7522127735 3514845.763417889 3168779.166126923 0.9554818259967164 0.8802605291763226 0.9129486549540733 0.8536659931136764 0.9315022696036658 1.0083145904123652 0.9927753433391613 1.0436018349157237 1.1092113331816522 1.0 21.595495690377597 2.572944747551818 1.4613216011783698 1.0463423447263553 0.8985829840230465 0.7339190255360101 0.037976907563606783 0.19934012762246894 0.8618335051535749 0.017359295617937424 0.014326719692502835 374.06299565478105 -2.572944747551818 -0.14775936070330886 ASSNKDFT(ph)PNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSNKDFTPNR 11 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;Q7Z6E9-4 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 ASSNKDFT(1)PNR 106.58 0.008065000000000001 0.0 227450.0 242450.0 222100.0 231120.0 227030.0 268390.0 274400.0 263120.0 376730.0 298490.0 True False 226225.43447207083 250519.8016858801 253369.7494721931 260379.76830273258 255940.92478776406 249836.83102210282 261126.22369020488 282755.3504962875 283889.9394233689 279440.11264985416 0.8095667881280068 0.8965062292248216 0.9067050076295671 0.9317909509612721 0.9159061752471622 0.8940621611298696 0.9344622044917471 1.0118638581089732 1.0159240802307095 1.0 18.092179603871667 7.999999999999298 0.1658852455056704 1.0364969668638093 0.22488193545646634 0.7531131214714347 0.030075799432559294 32.219494363315334 0.34161217511821157 0.09014297463079511 6.456810357294117 99999999.99983844 -7.999999999999298 -0.8116150314073429 ASSPS(ph)PLTIGTPESQR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSPSPLTIGTPESQR 16 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 ASSPS(1)PLTIGTPESQR;ASSPS(1)PLTIGTPESQR;ASSPS(1)PLTIGTPESQR;ASS(0.001)PS(0.999)PLTIGTPESQR 424.53 4.874299999999996e-160 3167260000.0 1431770.0 1485410.0 1312240.0 1386370.0 1283210.0 1458900.0 1400460.0 1287920.0 1473940.0 1476540.0 True False 1424061.5094046018 1534850.9739006932 1496991.9858054484 1561884.2998522832 1446619.1873184463 1358049.6768812018 1332714.399523267 1384031.1303252461 1110707.236784118 1382305.953070507 1.0302071739193075 1.1103554683327082 1.0829671842765274 1.1299121561206331 1.046526048813637 0.9824523101159879 0.9641240396620716 1.0012480429899815 0.8035176541900232 1.0 20.39864553969984 2.685923986110218 1.67574981240429 0.9459471489413431 1.0904038769127367 0.5759517562648528 0.05711517972696196 0.2716293631932664 1.5244188423431415 0.022587077366155287 0.021074077693602956 485.2035683013538 -2.685923986110218 0.14445672797139353 ASSPS(ph)PLTIGTPESQRK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSPSPLTIGTPESQRK 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 ASSPS(0.96)PLT(0.04)IGTPESQRK 141.31 3.8507e-07 287500000.0 232270.0 254440.0 210580.0 230670.0 177750.0 256160.0 212860.0 193160.0 315320.0 252140.0 True False 231019.48412762283 262908.8815877717 240227.83360582803 259872.7983488723 200385.40889320802 238452.26213577914 202563.14859583473 207574.58004660546 237613.61107152817 236048.2093320858 0.9786961942278991 1.1137931625564539 1.017706655286938 1.1009310305051658 0.848917301513161 1.0101845839478967 0.8581431274950178 0.8793736696158451 1.0066317035145989 1.0 17.848722013097767 3.2460001719165947 24.99951188182728 0.9229811161166059 1.0546343601835833 0.4251593176430336 0.06700614673103017 142.45059367499815 478680.7616981684 0.017724087552036367 0.023534365328946268 1761.9767438945457 -3.2460001719165947 0.13165324406697732 ASSRPGS(ph)PTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHK 45 1 H0Y9C1;H0Y9Z5;Q96LI5-2;Q96LI5 H0Y9C1 CNOT6L CCR4-NOT transcription complex subunit 6-like 1 AS(0.011)S(0.009)RPGS(0.974)PT(0.007)ADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHK 314.08 5.358699999999996e-115 290570000.0 65963.0 62299.0 50084.0 54118.0 51639.0 71585.0 74577.0 64058.0 85565.0 75062.0 True False 65607.86253717828 64372.584554459245 57135.391862068005 60969.33325115642 58214.9205616674 66636.49744296433 70969.42559819396 68838.33323993298 64478.65226225825 70271.47889618861 0.933634293282772 0.9160556397220023 0.8130665920162798 0.867625588771596 0.8284288515923758 0.9482723074806182 1.0099321476218883 0.9796055856690764 0.9175650388333502 1.0 16.100651640623596 2.5662035336932663 5.3359336269207684 0.9771597374232855 0.8712136827237902 0.607099957027212 0.04042379561048708 0.15613190654292464 7.154528205862794 0.013826857129938752 0.012900773351467568 368.3015390625254 -2.5662035336932663 -0.10594605469949536 ASSRS(ph)PVFTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSRSPVFTPR 11 1 P52735-3 P52735-3 VAV2 Guanine nucleotide exchange factor VAV2 1 AS(0.003)S(0.013)RS(0.983)PVFTPR;AS(0.037)S(0.029)RS(0.934)PVFTPR 106.52 0.0014049000000000002 1212490000.0 368670.0 388520.0 334590.0 353310.0 282190.0 303240.0 372460.0 373920.0 516760.0 406660.0 True False 366685.12168308726 401451.65333470085 381697.36369158473 398039.00977430947 318125.2238288295 282277.7325501781 354442.68686462747 401823.80912728695 389411.4222292361 380706.6106408576 0.9631698306100662 1.0544908917103444 1.0026024056925604 1.0455269192837908 0.8356178089298671 0.741457397009759 0.931012693128656 1.0554684313226974 1.0228648816308321 1.0 18.538320095705465 -0.6197058287200883 9.647313234043207 0.9999999991619083 0.9631053352126279 0.01363716010220506 0.09757951662501098 0.0 0.0 0.10418880889313153 0.024557537764027533 0.24004583294887605 0.6197058287200883 -0.036894663949280426 ASSRVS(ph)GSFPEDSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASSRVSGSFPEDSSK 15 1 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 AS(0.005)S(0.019)RVS(0.972)GS(0.004)FPEDSSK;AS(0.016)S(0.082)RVS(0.896)GS(0.006)FPEDSSK 148.83 2.0972e-06 499360000.0 401760.0 424100.0 372680.0 349970.0 446530.0 556570.0 481860.0 470840.0 705130.0 483330.0 True False 399596.9687997324 438215.9121261359 425150.1046073694 394276.1661167675 503392.9487093343 518095.62592485454 458550.5909160424 505976.47167707543 531360.1597579167 452483.4656003688 0.8831194931499541 0.9684683429143598 0.9395925750419793 0.8713603835084447 1.1125112561658297 1.1450045478179618 1.0134085016954675 1.1182209078197598 1.1743195059136402 1.0 18.78750554943447 3.2315796664561294 24.99953380877213 1.0977756464815207 0.9211202304708098 0.7045024611733091 0.056485185240853976 85.63165998095013 306655.95037529967 0.01579405226954657 0.019265681599732007 1704.4319495821908 -3.2315796664561294 -0.1766554160107109 ASSSSSSSSS(ph)PPASLDHEAPSLQEAALAAACSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSSSSSSSSPPASLDHEAPSLQEAALAAACSNR 34 0 Q8IXZ2-2;Q8IXZ2 Q8IXZ2-2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 AS(0.006)S(0.006)S(0.006)S(0.02)S(0.02)S(0.09)S(0.079)S(0.361)S(0.412)PPASLDHEAPSLQEAALAAACSNR 105.36 1.0501e-05 119510000.0 32972.0 37462.0 41310.0 52982.0 38360.0 43272.0 46440.0 36745.0 37035.0 40820.0 True False 32794.48241553358 38708.90002374279 47126.08892704319 59689.51576763317 43244.918622466736 40280.70849133137 44193.519781972034 39487.09848732928 27908.220493574885 38214.83265223978 0.858161089280905 1.0129286807559539 1.233188415500784 1.5619462817177812 1.131626534021526 1.0540595286100385 1.1564493866593406 1.0332924612458019 0.7302981213484179 1.0 15.221845092166605 1.4893559672089052 3.847624599512417 0.864495540362396 1.152953103806534 0.26812397702114044 0.18136285520296588 0.2682519551737163 8.179725411175482 0.1302995892767306 0.05000735900917758 30.8571610513868 -1.4893559672089052 0.288457563444138 ASSTS(ph)TPEPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 1 AS(0.001)S(0.003)T(0.02)S(0.488)T(0.488)PEPTR 96.756 0.0071072 1053900000.0 1285300.0 1315700.0 1228700.0 1243800.0 1182300.0 1409600.0 1348200.0 1225700.0 1588500.0 1510600.0 True False 1278380.0876102543 1359492.2791425562 1401690.2799481463 1401264.9524703117 1332858.896958875 1312157.6698414832 1282982.4153758537 1317167.9579784856 1197035.4598094686 1414192.214710275 0.9039648743025753 0.961320720762895 0.9911596637061887 0.9908589072224445 0.9424877913303584 0.9278495922920241 0.907219260600086 0.9313924544891752 0.8464446680995941 1.0 20.43154679156687 2.8464081729163646 2.906475858087787 0.9176673955367604 0.9639201459835036 0.15640860642943477 0.04169844434304118 0.42571555475314476 6.949235008256999 0.013186811979130688 0.014038826279155248 702.1148731002087 -2.8464081729163646 0.04625275044674326 ASSTST(ph)PEPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 1 AS(0.002)S(0.038)T(0.232)S(0.159)T(0.57)PEPTR;ASSTS(0.06)T(0.94)PEPTR;ASS(0.002)T(0.007)S(0.17)T(0.822)PEPTR;ASSTS(0.003)T(0.997)PEPTR 283.44 1.7250000000000003e-26 3474170000.0 3248140.0 3257830.0 2883170.0 3149780.0 3001530.0 3330270.0 3298940.0 2910380.0 3854300.0 3679650.0 True False 3230652.3751422768 3366264.9021501793 3289095.2750371085 3548541.825045783 3383757.0540378666 3100056.273512341 3139357.6690253816 3127567.33421019 2904459.409973965 3444811.5866931407 0.9378313715681481 0.9771985542412894 0.9547968567402804 1.0301120208586556 0.982276379674546 0.8999204152376448 0.9113292817384591 0.9079066461258943 0.8431402812256885 1.0 21.71599364648394 2.7399944142153756 24.929503524366684 0.9068694657028599 0.9782640567945182 0.36250364528620904 0.04206532748583717 119.9213777374605 2085092.762532997 0.012554121397403946 0.01269588033120106 549.5338058488163 -2.7399944142153756 0.07139459109165835 ASSVGVLS(ph)PQKK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASSVGVLSPQKK 12 1 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 ASSVGVLS(1)PQKK;ASSVGVLS(1)PQKK;ASSVGVLS(1)PQKK;ASSVGVLS(1)PQKK 149.59 3.6062e-05 2948310000.0 4375980.0 3291460.0 2928270.0 2469280.0 2377820.0 4212590.0 4254710.0 3622760.0 6410110.0 4594730.0 True False 4352420.209897088 3401014.256370416 3340544.9630208863 2781890.5948190177 2680621.2825566716 3921383.5686702104 4048893.422729419 3893108.7472025375 4830424.281573358 4301490.397653736 1.0118400385761948 0.7906595021636016 0.7766017482784568 0.6467271428378429 0.6231843000321067 0.9116336911525232 0.9412768711370141 0.9050604295957625 1.122965259717453 1.0 22.03640518652446 2.5329475865205873 6.7280615942082465 0.9689680095389948 0.7640503827550523 0.465591343962929 0.11200560276792779 0.2382477263307067 23.616519944046164 0.03843925380856475 0.035846877685791256 341.15173672951613 -2.5329475865205873 -0.20491762678394243 ASSVSTKES(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASSVSTKESPAR 12 1 Q13428-4;Q13428;Q13428-3;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 ASSVST(0.001)KES(0.999)PAR;ASSVSTKES(1)PAR;ASSVSTKES(1)PAR;ASSVS(0.003)T(0.162)KES(0.835)PAR;ASSVSTKES(1)PAR;ASSVS(0.005)T(0.004)KES(0.991)PAR 292.16 9.873699999999999e-36 3602350000.0 5607610.0 4727210.0 4154879.0 4002159.0 4152764.0 5418120.0 5390150.0 4896960.0 7575850.0 5847840.0 True False 5577419.250824046 4884552.327191207 4739849.848344327 4508831.919049392 4681593.880039354 5043578.117282588 5129407.852127406 5262396.021459026 5708883.278689055 5474625.844612293 1.0187763345166163 0.8922166492890484 0.8657851664893088 0.8235872271502607 0.8551440797815653 0.9212644407920755 0.9369421760896 0.9612339127500144 1.042789670148381 1.0 22.384328938500524 1.737274802982368 1.4000499199272125 1.019131822423937 0.8887401769929357 0.48008763057864845 0.05049897909535627 0.35105548672944487 1.3151808924580375 0.04213004257631933 0.016354966776549504 54.61033026137971 -1.737274802982368 -0.13039164543100124 ASSVSTKES(ph)PARK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASSVSTKESPARK 13 2 Q13428-4;Q13428;Q13428-3;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 ASSVS(0.017)T(0.017)KES(0.966)PARK;ASSVST(0.001)KES(0.999)PARK;ASSVS(0.01)T(0.01)KES(0.979)PARK 115.73 0.00033461 4838670000.0 4249540.0 3580780.0 2865850.0 2921470.0 3020360.0 4169730.0 4333920.0 3970270.0 6395010.0 4467120.0 True False 4226660.948808282 3699964.0976727833 3269336.76958525 3291327.8024549354 3404984.9429237125 3881486.3795886324 4124271.7324178284 4266551.708022562 4819045.47424373 4182024.5771061527 1.010673388182959 0.8847303571403347 0.7817593391207524 0.7870178048385466 0.8141953448967699 0.9281357170489216 0.9861902187269574 1.0202120119951326 1.152323566108351 1.0 21.995770109770312 2.149187209407689 1.594957952387386 1.063691299400005 0.8507034527403138 0.599879922629356 0.07200765305469206 0.2715609138281956 1.3338122182624446 0.04442870326319999 0.024728560966146673 140.98964252853455 -2.149187209407689 -0.21298784665969117 AST(ph)PDWVSEGPQPGLR ddPTM_BT-474_Trastuzumab_2h_R1 5 ASTPDWVSEGPQPGLR 16 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 AS(0.018)T(0.982)PDWVSEGPQPGLR;AS(0.017)T(0.983)PDWVSEGPQPGLR;AS(0.001)T(0.999)PDWVSEGPQPGLR;AS(0.001)T(0.999)PDWVSEGPQPGLR;AS(0.002)T(0.998)PDWVSEGPQPGLR 275.83 3.1523000000000002e-34 2484538000.0 1065475.0 975511.0 937479.0 932958.0 910247.0 1066119.0 981719.0 990963.0 1197237.0 1156754.0 True False 1059738.600985401 1007980.2939261482 1069467.8944864557 1051070.3871416622 1026161.5599933392 992420.7029041792 934229.5014392282 1064913.691068154 902193.9835038782 1082928.9693730765 0.9785855129528018 0.9307907743106022 0.9875697527101768 0.9705810970687601 0.9475797480857856 0.916422711896521 0.8626876996189948 0.9833643029095881 0.8331054104371883 1.0 20.046507187252974 2.9259069340342942 3.485967996892025 0.9190531384952785 0.9654348574624863 0.18011531407631987 0.04813326098753667 0.42945967606265156 10.090760823801425 0.014296389141728535 0.015725216235455333 843.1540569769808 -2.9259069340342942 0.046381718967207775 AST(ph)PVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASTPVLK 7 0 Q04724;A0A669KBK8;A0A669KAE5;F6T2C8 Q04724 TLE1 Transducin-like enhancer protein 1 1 AS(0.06)T(0.94)PVLK;AS(0.063)T(0.937)PVLK 121.05 0.050034 974900000.0 3615700.0 3172500.0 2810600.0 2672400.0 2621900.0 3416600.0 3651200.0 3483000.0 4569300.0 3540800.0 True False 3596233.4729420315 3278094.744683254 3206308.0498268567 3010725.5659926548 2955783.4237811696 3180418.4838112993 3474577.5070615066 3742919.1463156315 3443257.2404831043 3314823.112568606 1.0848945330767181 0.9889199614464822 0.9672636943038379 0.9082613049779568 0.8916866220022154 0.9594534537159183 1.048193942502443 1.129145966227833 1.038745394113949 1.0 21.66050045582226 2.169705183700064 4.567618932769792 1.0739853174898215 0.9615657073968464 0.3365080719537087 0.05798110461238924 0.20363678014790018 8.189322872804745 0.02359805713959999 0.017312711301496714 147.81046515225296 -2.169705183700064 -0.11241961009297508 ASTAPGAEASPS(ph)PCITER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASTAPGAEASPSPCITER 18 0 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 ASTAPGAEAS(0.25)PS(0.75)PCITER 313.51 1.5141999999999997e-42 0.0 147050.0 146890.0 124610.0 133740.0 111620.0 163960.0 167260.0 146900.0 224730.0 171880.0 True False 146258.29913879084 151779.1448531197 142154.0048704634 150671.4702873287 125834.14537642685 152625.83112032484 159168.9948047509 157862.42394308554 169348.30272771945 160910.47124612844 0.9089420844158386 0.9432521306892361 0.8834353896896171 0.9363683365072111 0.7820134041118499 0.9485139776072657 0.9891773578941685 0.9810574956406621 1.0524380509002706 1.0 17.295898686907822 2.4174103910775426 4.205407143211828 1.0001643846074115 0.8932916548490282 0.5833775297207351 0.04541377663061885 0.16190658175715922 5.868519882281917 0.01615075314468528 0.01351296295621034 261.4630910010949 -2.4174103910775426 -0.10687272975838336 ASTAS(ph)PCNNNINAATAVALQEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASTASPCNNNINAATAVALQEPR 23 0 Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;Q71RC2-6 Q71RC2-5 LARP4 La-related protein 4 1 AS(0.003)T(0.015)AS(0.982)PCNNNINAATAVALQEPR;AS(0.002)T(0.014)AS(0.983)PCNNNINAATAVALQEPR 266.0 2.8161999999999997e-44 578990000.0 217780.0 222570.0 236070.0 241990.0 240680.0 265870.0 251610.0 230640.0 283200.0 258990.0 True False 216607.4966776324 229978.1079035939 269306.60404277605 272625.90918820625 271329.1713778752 247491.03269066088 239438.66305645934 247851.52796618943 213409.154685579 242461.03646750536 0.8933703321303016 0.9485157337204387 1.110721161496266 1.124411217407064 1.119062985669612 1.0207455857503507 0.9875346016206151 1.0222324030995658 0.8801791735068332 1.0 17.887393399008566 -0.8009816132592228 7.403804476091234 1.0000071358400504 1.0189071993729641 0.0 0.08399445708515055 0.0 0.0 0.0849303682880508 0.020018279781717215 0.1581314986041471 0.8009816132592228 0.018900063532913736 ASTNIQDTEGNTPLHLACDEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASTNIQDTEGNTPLHLACDEER 22 0 O75832;B1AJY5;B1AJY7 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 157.83 1.5545999999999998e-09 507130000.0 85491.0 124440.0 105560.0 141440.0 121240.0 102340.0 102090.0 86471.0 93013.0 111860.0 False True 85030.72595494313 128581.91017443142 120421.93045603191 159346.28949783024 136679.19535421958 95265.47668244701 97151.51667832724 92923.9051108409 70091.19246034519 104720.99903183576 0.8119739760035456 1.2278522107618723 1.1499310698843026 1.5216269035915908 1.3051746700073819 0.9097074852531323 0.9277176266127164 0.8873473894437497 0.6693136344033261 1.0 16.676191240119465 2.679784810811673 6.2803027135087355 0.8750514506483689 1.2191049572896302 0.44183618952419634 0.18201360481919307 0.216081133491145 18.11542311212251 0.0606810695077953 0.05740800499478007 478.3929939648232 -2.679784810811673 0.34405350664126133 ASTSKS(ph)ESS(ph)QK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASTSKSESSQK 11 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 AS(0.002)TS(0.005)KS(0.993)ES(0.005)S(0.995)QK 101.32 0.040305 136360000.0 993590.0 453460.0 392280.0 554430.0 469050.0 893140.0 702480.0 761900.0 1203700.0 766000.0 True False 988240.6218382269 468553.1419776415 447509.6142411154 624620.7811530116 528780.7372228368 831399.3340254142 668498.3586657988 818756.8468498077 907064.2637536408 717113.2241944068 1.3780817149877556 0.653387953490896 0.6240431763670797 0.8710211443314274 0.737374126403624 1.159369686648011 0.932207545630997 1.1417399919930158 1.26488291269851 1.0 19.45184139683357 2.7345681105962014 24.81731537750639 1.097070100148478 0.8300098106341767 0.24762739209952334 0.21328471981233818 420.487301421669 2613728.1844202396 0.06668990330322942 0.06501046112973449 542.7103581613251 -2.7345681105962014 -0.2670602895143013 ASTSKS(ph)ESSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ASTSKSESSQK 11 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 AS(0.007)T(0.015)S(0.064)KS(0.513)ES(0.2)S(0.2)QK;AS(0.001)T(0.036)S(0.036)KS(0.905)ES(0.021)S(0.001)QK 143.05 9.8295e-05 144643000.0 361540.0 133077.0 134655.0 196232.0 109985.0 169595.0 191617.0 210712.0 314050.0 233518.0 True False 359593.50881086994 137506.38749825483 153613.25355775843 221074.95107987974 123990.93781783119 157871.29683368778 182347.7536619751 226436.39941385563 236656.58555439985 218614.68131518175 1.6448735585714658 0.6289897214176973 0.7026666856664157 1.0112539091606156 0.5671665648066455 0.7221440750636557 0.834105708568951 1.0357785581993788 1.082528328521572 1.0 17.738030764510604 1.7024063344347633 5.09661755005779 1.046648542664845 0.8446851618958549 0.05925514201666249 0.2881885229979121 0.3992016433349959 24.51450442738646 0.14691536979765316 0.0727941941682527 50.39719142792191 -1.7024063344347633 -0.20196338076899023 ASTVS(ph)PGGYMVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ASTVSPGGYMVPK 13 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 ASTVS(1)PGGYMVPK;AST(0.004)VS(0.996)PGGYMVPK;ASTVS(1)PGGYMVPK;AST(0.004)VS(0.996)PGGYMVPK 239.31 8.7369e-17 964670000.0 1222470.0 1207050.0 1096400.0 974730.0 958480.0 1272280.0 1261410.0 1139250.0 1523790.0 1316440.0 True False 1215888.3573491857 1247225.9295728651 1250763.5899203615 1098130.718058682 1080536.746643949 1184330.2782249742 1200390.7792458495 1224266.6199942825 1148272.3722398956 1232423.672139012 0.9865830921917238 1.0120106889931464 1.0148811794157755 0.8910334513071716 0.8767575396929485 0.9609765740457044 0.9740082135573023 0.9933812922218769 0.9317188546426878 1.0 20.23306686806819 3.782078039473219 24.995442252434 0.9486856396429691 1.0052435831272397 0.3212223187796568 0.0383345247628194 630.1907888858935 361965.58938205347 0.010918055340897207 0.01968267741925201 6054.496597594516 -3.782078039473219 0.05655794348427057 ASTVSPGGY(ph)MVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASTVSPGGYMVPK 13 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 AS(0.021)T(0.021)VS(0.107)PGGY(0.851)MVPK 70.1 0.035688 0.0 49608.0 54120.0 38757.0 48252.0 42413.0 60660.0 54980.0 43370.0 67530.0 49525.0 True False 49340.916039966934 55921.351483769155 44213.64871811699 54360.69825261098 47814.04414845368 56466.71697828062 52320.40735600391 46606.48962839767 50888.13635563958 46364.27209951431 1.064201243881575 1.2061302583105789 0.9536146415330038 1.1724695717412208 1.0312691644511887 1.2178928821978021 1.128463900904248 1.0052242280082275 1.0975722048739478 1.0 15.500725884910734 1.7462485033584807 24.999998700140917 1.0380411574919368 1.1116731710163035 0.15996569691076445 0.07996987830768769 3.0972629088632355 10099.317797649459 0.03467614011514443 0.0192298124096048 55.750466192155784 -1.7462485033584807 0.07363201352436666 ASVAVSSFEHAGPSLPGLS(ph)PGACSLPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASVAVSSFEHAGPSLPGLSPGACSLPAR 28 0 Q8TER5;Q8TER5-2 Q8TER5 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 ASVAVSSFEHAGPS(0.142)LPGLS(0.858)PGACSLPAR 126.67 2.2277e-05 301370000.0 38910.0 66301.0 72274.0 69009.0 66353.0 68588.0 55683.0 63587.0 62163.0 59392.0 True False 38700.51288330738 68507.78870519916 82449.55098313044 77745.53232434775 74802.6612449566 63846.6729987853 52989.40056028311 68332.18482824347 46843.76159152414 55601.551711950626 0.6960329647596751 1.2321200865060489 1.4828642087233201 1.3982619177089917 1.345334058885249 1.1482894097911034 0.9530201753145303 1.2289618315374569 0.8424901850617931 1.0 15.762837525374096 2.4784180239142573 7.229004133845458 1.0447473777953638 1.2538219929004901 0.17846489459137127 0.21876385852993552 0.24494679975843955 84.20224638582269 0.07652542862621585 0.0668923242181862 300.8971151160414 -2.4784180239142573 0.20907461510512637 ASVGS(ph)PSSGEGHLAEPALSAYR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASVGSPSSGEGHLAEPALSAYR 22 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 ASVGS(0.602)PS(0.199)S(0.199)GEGHLAEPALSAYR 180.26 3.4675e-17 160420000.0 35361.0 50236.0 50551.0 51497.0 49118.0 46825.0 51772.0 50916.0 50544.0 49300.0 True False 35170.62030497642 51908.07489169674 57668.14140283126 58016.514919893634 55372.886154805055 43588.097964193716 49267.590571753964 54715.610466209204 38088.10845490075 46153.631792146465 0.7620336458757527 1.1246801795677857 1.249482200285788 1.2570303282127793 1.199751438937192 0.9444131755544901 1.0674694202534538 1.1855103995417247 0.8252461827149613 1.0 15.494156556399158 2.7476033857950264 24.74929206754068 1.0351609796797858 1.1338958897686127 0.09694092819376499 0.1576103331074151 1626.5092959827484 4451615.070854522 0.05017521115833744 0.05255432129154601 559.2466429561194 -2.7476033857950264 0.09873491008882684 ASVITQVFHVPLEER ddPTM_BT-474_Trastuzumab_2h_R1 3 ASVITQVFHVPLEER 15 0 Q00341;A0A024R4E5;Q00341-2;C9JIZ1;C9JZI8;C9J5E5;C9JHZ8;C9JES8;C9JK79;C9JHS7;C9JT62 Q00341 HDLBP Vigilin 0 ;; 180.64 6.210899999999999e-07 3516847000.0 755515.0 957925.0 977616.0 973544.0 930845.0 1033128.0 911473.0 899712.0 1039646.0 1042608.0 False True 751447.3911856067 989808.9545471086 1115255.8352093995 1096794.570580285 1049382.5931994275 961710.29308172 867381.5688250081 966853.0780849655 783439.1738426676 976067.8648183825 0.7698720737265835 1.014078006482964 1.1426007098562923 1.1236867948565914 1.075112326738353 0.9852903960327246 0.8886488328210685 0.9905592765979119 0.802648260516642 1.0 19.896621934554002 2.4649740312161432 5.514877491511673 0.926702880114864 1.0361799471206625 0.1661156758689818 0.10873230543081322 0.30508473369250577 30.325710227027997 0.03862529216987195 0.03326863360015465 291.72525706922175 -2.4649740312161432 0.10947706700579851 ASVLDTSMSAGSGS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ASVLDTSMSAGSGSPSK 17 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 ASVLDTSMSAGS(0.002)GS(0.998)PSK 227.64 1.7714999999999999e-15 59959000.0 140130.0 124050.0 84469.0 98706.0 90923.0 152690.0 133570.0 117720.0 207800.0 150220.0 True False 139375.5556499066 128178.92926019157 96361.50098229019 111202.16947944571 102501.50510715714 142134.89969359842 127108.70881304897 126504.8641700477 156590.47437734192 140632.83099018765 0.9910598732072117 0.9114438524609874 0.6851991836032484 0.790726949720614 0.7288590038716418 1.0106807826652908 0.9038338197281808 0.8995400524851435 1.1134702563746846 1.0 17.101573907948012 2.728057585647578 24.963720203081614 0.9659542022815818 0.8171798082026176 0.39922816402247907 0.09911082322504118 835.9453824962867 1986881.0864140121 0.03354681342303655 0.03192597329797447 534.6352451140272 -2.728057585647578 -0.1487743940789642 ASVMLEHDPQYAVILAFDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASVMLEHDPQYAVILAFDVR 20 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 132.13 1.3106e-05 112020000.0 97713.0 98238.0 132520.0 107860.0 92587.0 122090.0 130230.0 113770.0 147390.0 116330.0 False True 97186.92406493492 101507.79244387496 151177.664115511 121515.064940865 104377.40564385623 113650.2056689464 123930.27737308828 122260.09511235428 111067.70942481447 108905.71980487641 0.8923950389296563 0.9320703506275324 1.3881517369920713 1.1157822119772995 0.9584198684042174 1.0435650751179144 1.1379593064086164 1.122623268377497 1.019851938206842 1.0 16.732720201838074 4.446708209901632 24.999999335855936 1.1034546116810346 0.9023128392403885 0.30858168381299356 0.1118815865351208 192.2701748236187 158048.96086165344 0.027316134501470555 0.07481001552934241 27971.013953750145 -4.446708209901632 -0.20114177244064613 ASVSQTSPQS(ph)ASSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 ASVSQT(0.001)S(0.003)PQS(0.914)AS(0.079)S(0.002)PR 318.82 1.918e-56 467760000.0 528670.0 643780.0 533270.0 538740.0 513010.0 502260.0 553510.0 424030.0 767810.0 528600.0 True False 525823.6994607587 665207.8281267716 608349.7807340679 606944.4287617431 578338.782651503 467539.9483928653 526734.6066864632 455673.2717807117 578593.5136268866 494864.2954427719 1.0625614017885172 1.3442227177282764 1.2293264766449894 1.226486603198336 1.1686815718520238 0.9447841614326639 1.064402123040976 0.9208045033295549 1.1691963210019007 1.0 18.91667342966282 2.897573729434206 4.416085567928395 1.011540063074358 1.2233748789689485 0.5185811590869664 0.09021138078126822 0.16330829946060815 5.3385970960731886 0.026465647686763252 0.028480455351876526 789.9029384934912 -2.897573729434206 0.2118348158945904 ASVSQTSPQSAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 ASVSQTS(0.001)PQS(0.026)AS(0.703)S(0.269)PR;ASVSQTS(0.018)PQS(0.015)AS(0.546)S(0.421)PR 265.23 3.6022e-25 653120000.0 728600.0 819450.0 749870.0 749300.0 712980.0 746980.0 767120.0 635320.0 874730.0 726150.0 True False 724677.2985550695 846724.8978820153 855445.1780131168 844161.303172541 803773.7768364523 695343.030801781 730011.4749170188 682730.8044895924 659164.5122814836 679806.4853117078 1.0660052738725894 1.2455381291247485 1.2583657209755426 1.2417670637335454 1.1823567356347042 1.0228543649196715 1.0738518838670548 1.0043016935570184 0.9696355161708125 1.0 19.37476459960326 2.769711200827302 3.555886101342464 1.0165175027929423 1.2105087013348175 0.7309912372647289 0.0560218593971192 0.12468716708632305 3.348117403481744 0.01842885815737308 0.018854568408964115 588.4522135176312 -2.769711200827302 0.1939911985418752 ASWPETEPQPER ddPTM_BT-474_Trastuzumab_2h_R1 1 ASWPETEPQPER 12 0 Q5VY09 Q5VY09 IER5 Immediate early response gene 5 protein 0 51.286 0.090683 62427000.0 53919.0 62363.0 63913.0 58647.0 61599.0 60191.0 69373.0 63679.0 77586.0 71647.0 False True 53628.706094964095 64438.71475577044 72911.39485824514 66071.70418678758 69443.26752412233 56030.13784437339 66017.1629594044 68431.05033541011 58465.96989913595 67074.4271199173 0.7995402778332402 0.9607046608175324 1.0870222525776088 0.9850505926597476 1.035316595398869 0.8353427714589547 0.9842374477739081 1.0202256399904455 0.8716581327576464 1.0 16.03347520708543 4.725570233345308 4.846327839476498 0.9804071557367169 0.7913961131040794 0.3616391172199471 0.07024493366655914 0.17058960528125594 11.563910990151777 0.016610689657995965 0.10596820505246761 53158.19590620898 -4.725570233345308 -0.18901104263263746 ASYDDPYKK ddPTM_BT-474_Trastuzumab_2h_R1 3 ASYDDPYKK 9 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 ;; 96.342 0.011918000000000002 1371770000.0 6025460.0 5214160.0 4677920.0 4380610.0 4368540.0 6438210.0 6122230.0 5865240.0 9316310.0 6307370.0 False True 5993019.592851534 5387710.163573717 5336530.474790462 4935194.77684594 4924847.674634798 5993151.696616165 5826074.3457102105 6302933.991885241 7020430.232658207 5904828.246588858 1.0149354634173522 0.9124245343945654 0.9037571038367299 0.8357897250774293 0.8340374129391178 1.0149578355777462 0.986662795666556 1.0674203767952715 1.188930471722665 1.0 22.49346366596639 2.1424543752955474 1.5152644998760103 1.0921828267183682 0.9015974965872721 0.5513950605897289 0.06911838567627741 0.2940148655718766 1.2960968475529002 0.04256531446342777 0.02320294939420137 138.82074644602582 -2.1424543752955474 -0.19058533013109613 ASYDTLCVLDGDKDSVNCAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASYDTLCVLDGDKDSVNCAR 20 1 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 ; 259.55 2.4459e-36 814090000.0 761580.0 725330.0 633940.0 652150.0 633870.0 755250.0 763150.0 717090.0 970230.0 786790.0 False True 757479.737899492 749472.1705787565 723193.2416947414 734712.1231335542 714589.5872581592 703041.3451672681 726233.5189838916 770602.8971092383 731129.8169159218 736576.3885951906 1.0283790651288303 1.0175077319653987 0.9818306056131209 0.9974690127317386 0.9701500052439028 0.9544717371515519 0.9859581846887258 1.0461954917927028 0.9926055575991831 1.0 19.490475625947347 1.785471618121639 24.999999999876007 1.0178661734971308 0.9895664567216734 0.1399765757283099 0.024064361276755642 155.07435789969077 82669.03076861634 0.011718318570985346 0.00655518277113309 61.019917779408146 -1.785471618121639 -0.028299716775457395 ASYHFSPEELDENTS(ph)PLLGDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 ASYHFSPEELDENTSPLLGDAR 22 0 O75410-3;E7ET87;E7EVI4;O75410-2;O75410;O75410-9;O75410-7;H0YAY0;E5RFM9;R4GMT7;E5RJU4 O75410-3 TACC1 Transforming acidic coiled-coil-containing protein 1 1 ASYHFSPEELDENT(0.027)S(0.973)PLLGDAR;ASYHFSPEELDENT(0.097)S(0.903)PLLGDAR;ASYHFSPEELDENT(0.225)S(0.775)PLLGDAR;ASYHFSPEELDENT(0.293)S(0.707)PLLGDAR 270.72 1.6939999999999994e-45 1314220000.0 238734.0 512647.0 551830.0 611995.0 608892.0 545528.0 478487.0 382227.0 381445.0 501585.0 True False 237448.6826698411 529710.1454933438 629522.8674076552 689473.5042507389 686430.7870143648 507816.93339478155 455340.75581215473 410750.7196493784 287442.9908511323 469573.41587147693 0.5056689212892563 1.128066725221784 1.3406271439777517 1.4682975674232994 1.4618178197767528 1.0814431060845486 0.9696902346294286 0.8747316303821628 0.6121364224115403 1.0 18.840991209383912 2.099716827123158 2.0741777703628843 0.8179186011691122 1.2035969429760138 0.23850679538814834 0.27086488475739945 0.46059448853343954 3.8346065723640916 0.15056186926931794 0.08691189268247672 125.81048226581817 -2.099716827123158 0.38567834180690164 ASYNNPHR ddPTM_BT-474_Trastuzumab_2h_R1 6 ASYNNPHR 8 0 P54725-2;P54725;A0A494C0B4;K7ELU6;P54725-3 P54725-2;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 0 ;;;;; 121.85 0.0014156 337586000.0 342064.0 452076.0 445287.0 432168.0 354268.0 370745.0 402174.0 340055.0 490455.0 403025.0 False True 340222.3654308832 467123.0763742865 507979.53909601236 486880.4244888167 399381.9298890526 345116.2707898561 382719.30716612464 365431.6308643019 369588.9370102953 377303.5994529383 0.9017204339533996 1.2380562418476253 1.3463416194082014 1.2904208313802372 1.0585160874906208 0.9146911698967319 1.0143537133518967 0.9685347062528693 0.979553170301506 1.0 18.5253663378717 3.0514573191119405 5.366895292000347 0.9769482486620565 1.2068444756126344 0.4546944926511195 0.11253064970414563 0.1717528036587718 10.833516766086069 0.033795789202280324 0.04028036005870174 1125.7898249133768 -3.0514573191119405 0.22989622695057788 ASYPCMSLHGGIDQYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ASYPCMSLHGGIDQYDR 17 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ; 211.12 2.7601e-12 1515810000.0 294160.0 491070.0 470870.0 492720.0 481970.0 510600.0 486800.0 451950.0 475060.0 526320.0 False True 292576.27524424816 507414.9680919161 537164.4031245899 555098.3014802808 543346.0226399979 475303.4238231138 463251.62424341013 485676.80395559856 357987.8284778635 492729.80699477793 0.5937864344532113 1.0298036791942928 1.0901804508252186 1.1265774743076664 1.1027261085622864 0.964632983585974 0.940173737547645 0.985685860812447 0.7265398264847768 1.0 18.910437222528635 -0.7371687993857662 7.427382386960069 0.9999999981734015 0.9685744279877729 0.0 0.16175920554890394 0.0 0.0 0.15333923006262948 0.03614240286378793 0.18316023860401695 0.7371687993857662 -0.031425570185628526 AT(ph)NESEDEIPQLVPIGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATNESEDEIPQLVPIGK 17 0 O76021;J3QSV6;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AT(0.596)NES(0.404)EDEIPQLVPIGK 117.67 0.0020462 0.0 135350.0 103240.0 100450.0 99109.0 84638.0 126950.0 122430.0 110720.0 165000.0 130530.0 True False 134621.2906387986 106676.28099010204 114592.48687294812 111656.18923812541 95416.14761127056 118174.2453081558 116507.59317198172 118982.488624768 124337.96088672479 122199.46364764454 1.101652058203559 0.8729684877971089 0.9377495076686202 0.9137207799870539 0.78082296569155 0.967060261810189 0.953421477429107 0.9736743932677764 1.0175000542166575 1.0 16.89887842739557 1.8009905251176535 1.5657224646013284 1.0052319808262187 0.9201101455543316 0.14323412524409374 0.07571086505576058 0.6880106137334944 3.2259852385106607 0.055383197627505334 0.02284213277153949 63.23980543726348 -1.8009905251176535 -0.0851218352718871 AT(ph)PPPS(ph)PLLSELLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATPPPSPLLSELLK 14 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;Q9H0E9-3 H7C128 BRD8 Bromodomain-containing protein 8 2 AT(1)PPPS(1)PLLSELLK 84.84200000000001 0.042297 57636000.0 63922.0 56455.0 51631.0 54253.0 46391.0 66301.0 60583.0 57992.0 84877.0 63659.0 True False 63577.85105440187 58334.070547231866 58900.19601530298 61121.4242373146 52298.6188690004 61717.767925766326 57652.3688404653 62319.6575174092 63960.20064353066 59596.2281187881 1.0668099821297001 0.9788215192236582 0.9883208698695196 1.0255921585420884 0.8775491422839379 1.0355985583978493 0.9673828472089161 1.045698016209897 1.0732256497180361 1.0 15.862933404087238 1.6682078869367247 6.7687295724208 1.044824820718017 0.9895768345370151 0.15759351547720435 0.05038112273119178 0.20606655633489251 18.693273216607377 0.0244131439601412 0.01240265461995712 46.5809012394624 -1.6682078869367247 -0.05524798618100202 AT(ph)PPPSPLLSELLK ddPTM_BT-474_Trastuzumab_2h_R1 3 ATPPPSPLLSELLK 14 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;Q9H0E9-3 H7C128 BRD8 Bromodomain-containing protein 8 1 AT(0.999)PPPS(0.001)PLLSELLK;AT(1)PPPSPLLSELLK;AT(1)PPPSPLLSELLK 209.79 6.863e-08 1141200000.0 499320.0 446930.0 400620.0 395093.0 394994.0 488550.0 480680.0 467070.0 665400.0 485030.0 True False 496631.7165996676 461805.7948751101 457023.8137485368 445111.73329020257 445294.1445871385 454777.6884229976 457427.67202408036 501925.13513340306 501421.08590319246 454074.97014492523 1.0937218504714314 1.0170254368517988 1.0064941778285432 0.9802604471859308 0.9806621678464589 1.0015475820608393 1.0073835866312673 1.105379437614026 1.104269380325359 1.0 18.792570988091757 1.7511639763235012 24.999997551118632 1.0790739848548274 1.009510577538711 0.2862802542419719 0.04061074376765542 3.8282176781829746 7605.681312585206 0.01859491487516726 0.010311962512617366 56.38505083597325 -1.7511639763235012 -0.06956340731611643 AT(ph)PSENLVPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATPSENLVPSSAR 13 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 AT(0.984)PS(0.016)ENLVPSSAR;AT(0.963)PS(0.037)ENLVPSSAR 208.05 5.4752e-07 1530200000.0 369880.0 269670.0 249210.0 248440.0 230860.0 275810.0 279250.0 253760.0 330920.0 282990.0 True False 367888.60717753123 278645.80293104274 284296.60182784847 279892.47852687264 260258.6525855754 256743.90388690392 265741.61066140566 272696.85976717056 249369.20010081815 264929.3359200714 1.3886291825701116 1.0517740587818842 1.0731035158508084 1.056479749797567 0.982370078729578 0.9691033384251678 1.0030660052746265 1.0293192289186224 0.9412668447410154 1.0 18.015248078216434 7.666430958168848 1.0176937097959293 0.9997971529741645 199.99999999888868 0.9098914190244013 0.03593627054509334 228.85341474439866 0.6122490586142073 0.01066120058794914 105806.30032924865 46390703.464208566 -7.666430958168848 199.00020284591452 AT(ph)SLPSIPNPFPELCSPPSQSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 AT(0.466)S(0.466)LPS(0.067)IPNPFPELCSPPSQSPILGGPSSAR 148.77 4.9295e-08 70180000.0 75299.0 68861.0 63765.0 64729.0 58186.0 74475.0 66476.0 64224.0 76252.0 83629.0 True False 74893.59855050541 71152.99675764651 72742.55774468431 72923.68476318601 65595.6422045582 69326.71854529255 63260.30191701915 69016.72100286404 57460.716324451794 78291.72562161088 0.9565966001627191 0.9088188591158877 0.9291219112509275 0.9314353998994866 0.8378362040656289 0.8854922789715122 0.8080075054516028 0.8815327603893475 0.7339308958671221 1.0 16.256572221734253 3.2441166400982246 24.983871717577916 0.8518970144155975 0.9297042370263032 0.2374492223154091 0.06414370621623951 176.33035400117114 792901.7290547171 0.01642530447403653 0.02162679275447951 1754.3516113686733 -3.2441166400982246 0.07780722261070572 AT(ph)SPSSSVSGDFDDGHHSVSTPGPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;Q86U86-6;C9JQF1;C9JPI5;C9JCJ2;C9J053;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 AT(0.483)S(0.483)PS(0.032)S(0.001)SVSGDFDDGHHSVSTPGPSR;AT(0.461)S(0.461)PS(0.079)SSVSGDFDDGHHSVSTPGPSR;AT(0.49)S(0.43)PS(0.078)S(0.002)SVSGDFDDGHHSVSTPGPSR;AT(0.552)S(0.444)PS(0.004)SSVSGDFDDGHHSVSTPGPSR 150.24 2.613e-07 3077100000.0 115380.0 209755.0 248283.0 227519.0 275097.0 227836.0 247954.0 131815.0 191932.0 227055.0 True False 114758.80689992309 216736.56837542466 283239.0882854773 256322.88207195146 310128.972322334 212086.23358825513 235959.51774373592 141651.70464300746 144632.93035703563 212564.1555084344 0.539878450463251 1.019628957935124 1.3324875382116745 1.2058612679021545 1.4589899768403254 0.9977516344699033 1.110062593476035 0.6663950669584403 0.6804201301535842 1.0 17.697538811521685 1.7631503415399228 9.655536387458335 0.7571005064670321 1.1158615797617644 0.24993964847097183 0.245146298959725 0.23235714333930246 76.33487617089618 0.11820643143043774 0.06492719484424278 57.962931440814685 -1.7631503415399228 0.3587610732947323 AT(ph)TPPNQGRPDS(ph)PVYANLQELK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 AT(0.836)T(0.164)PPNQGRPDS(0.999)PVY(0.001)ANLQELK 96.46 0.0033481 243050000.0 234460.0 215210.0 203980.0 201700.0 197180.0 257280.0 268260.0 231490.0 298590.0 254150.0 True False 233197.69341095496 222373.13475280782 232698.61097405647 227235.199319233 222289.70422257535 239494.8391719755 255283.23894728284 248764.95928240215 225006.49540101324 237929.92941123797 0.9801107997972638 0.9346160666002561 0.9780131972042084 0.9550509256297883 0.934265414917053 1.006577187513189 1.0729345382440365 1.0455387428474243 0.9456838656565653 1.0 17.860177235469692 2.5780140597576064 5.305625446602623 1.0261848961049884 0.9567243595834808 0.4034369836630899 0.03429482290489931 0.198102483658924 8.378989122779254 0.011383314674340594 0.010639765515940508 378.45483653552327 -2.5780140597576064 -0.06946053652150763 AT(ph)VTPS(ph)PVKGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 AT(0.832)VT(0.169)PS(0.999)PVKGK 84.46799999999998 0.036525 1311500000.0 3805600.0 2196600.0 1835900.0 1871200.0 1720400.0 3380400.0 3325700.0 2890500.0 5407500.0 3688500.0 True False 3785111.072441907 2269712.5031272606 2094378.762071134 2108093.7281415407 1939482.7423902978 3146720.9046056694 3164823.185592256 3106203.7876615957 4074894.081787664 3453096.772116277 1.0961497236355038 0.6572976817374964 0.6065218846408309 0.6104936719886848 0.5616647520717063 0.9112750415845309 0.9165173739549302 0.8995414819370721 1.1800694711750896 1.0 21.71945933522585 2.5755373630524008 5.158620677038349 0.971543879410925 0.6935108587932177 0.4347918287140352 0.15755969420675317 0.22846219147164193 9.425434429568638 0.05281021124251291 0.049299607491720215 376.30272480353113 -2.5755373630524008 -0.2780330206177073 ATAAVIFLHGLGDTGHGWAEAFAGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATAAVIFLHGLGDTGHGWAEAFAGIR 26 0 B4DP64;E5RGR0;O75608-2;O75608 B4DP64 LYPLA1 Acyl-protein thioesterase 1 0 226.16 9.353299999999998e-35 92958000.0 29934.0 41019.0 36327.0 40634.0 42492.0 41446.0 33330.0 26364.0 50129.0 41123.0 False True 29772.838669980047 42384.29261849088 41441.52584005564 45778.260233702116 47903.104330183975 38580.93557338972 31717.70056703545 28331.415553679388 37775.37964418566 38498.494932828384 0.7733507172664091 1.10093375578558 1.0764453496782722 1.1890922051258201 1.2442851185160515 1.0021413990522272 0.8238685855739564 0.7359096921350207 0.9812170504352338 1.0 15.232514425476786 2.3869756018604416 4.53375559722215 0.849630058590497 1.0877315818443027 0.28575253122127553 0.13716840365318775 0.2223890859477906 8.202280536642851 0.049841550004888484 0.04131943064069016 243.7673868947632 -2.3869756018604416 0.23810152325380574 ATAGDTHLGGEDFDNR ddPTM_BT-474_Trastuzumab_2h_R1 11 ATAGDTHLGGEDFDNR 16 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931;P17066;P48741 A0A0G2JIW1;Q53FA3;P17066 HSPA1B;HSPA1A;HSPA1L;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 ;;;;;;;;;; 220.6 1.134e-14 84184307000.0 33130630.0 39288760.0 36779940.0 34045680.0 33336610.0 30945737.0 32102060.0 28559246.0 44268210.0 34436690.0 False True 32952258.369239017 40596462.62604306 41958235.85503061 38355859.597217776 37581829.68193197 28806531.03961929 30549160.716021836 30690481.957432684 33358902.809123192 32238910.961466406 1.0221269077179822 1.2592380268231154 1.3014780773823669 1.1897380666196404 1.1657288835485695 0.8935330065600022 0.9475866214133521 0.9519701826812796 1.034740374729018 1.0 24.94229967429862 2.834498968780634 5.151972489508226 0.9607405351614879 1.20188279007211 0.6796645958375789 0.07613426221152222 0.1259754072256791 5.2843424806080215 0.023661244872283858 0.02513587920148245 683.1230959218374 -2.834498968780634 0.24114225491062213 ATAPAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATAPASPR 8 0 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 ATAPAS(1)PR;ATAPAS(1)PR 99.34 0.0072193 1308100000.0 1391840.0 1551960.0 1452260.0 1551020.0 1226310.0 1381890.0 1377010.0 1349280.0 1615680.0 1323980.0 True False 1384346.48808796 1603616.0504203672 1656725.584729791 1747378.9729703362 1382473.309591169 1286363.1969191583 1310398.7656109664 1449970.1251050127 1217517.31300281 1239482.4628836934 1.1168746065734856 1.293778733012088 1.3366268860919328 1.4097649828017786 1.1153633480015548 1.0378228296400382 1.0572144462312796 1.1698189918166437 0.9822787731665192 1.0 20.241306428574777 3.0934034782985944 6.609769239068616 1.0702629615405719 1.292092789417269 0.6429388771368563 0.08396628769727735 0.1456485119330415 8.682877467208458 0.024993792749842293 0.029974838489537674 1239.9480167521672 -3.0934034782985944 0.22182982787669703 ATAPQTQHVS(ph)PMR ddPTM_BT-474_Trastuzumab_2h_R1 21 ATAPQTQHVSPMR 13 0 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;E9PPR1;E9PL12;E9PK06;P29692-3;E9PL71 P29692;P29692-3 EEF1D Elongation factor 1-delta 1 ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.004)QHVS(0.996)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.001)QHVS(0.999)PMR;ATAPQTQHVS(1)PMR 200.48 7.0531e-08 141740004000.0 20565514.0 22323046.0 21493127.0 22430319.0 21717442.0 23546908.0 23530109.0 20398941.0 24290402.0 23662740.0 True False 20454791.557667427 23066055.091543753 24519172.45999114 25269995.08556757 24483029.509336308 21919165.673419245 22391867.733924575 21921213.56114353 18304357.901811074 22152563.674509067 0.9233600163941628 1.0412363747355273 1.1068322754988997 1.1407255366405167 1.1052007284154162 0.9894640636398038 1.0108025447046056 0.989556508367844 0.8262862109668093 1.0 24.40097033303591 1.8726165990776082 1.3850115876775186 0.9235416828070343 1.062725716168541 0.34489336869783005 0.0717529795436628 0.4668975081910751 1.671446461822057 0.055415800983071084 0.023691883406659207 74.57900743470744 -1.8726165990776082 0.13918403336150675 ATAPQTQHVSPMR ddPTM_BT-474_Trastuzumab_2h_R1 7 ATAPQTQHVSPMR 13 0 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;E9PPR1;E9PL12;E9PK06;P29692-3;E9PL71 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 ;;;;;; 194.13 1.2784e-06 2093324000.0 501635.0 1123132.0 1247906.0 1523115.0 1439103.0 1170596.0 1251818.0 1144041.0 882904.0 1267300.0 False True 498934.25289688807 1160514.7696723675 1423600.3178066027 1715941.202831501 1622364.2368182412 1089675.4538065854 1191262.780930848 1229415.148742487 665324.1395074733 1186419.8290098822 0.4205376888493763 0.9781653520077007 1.1999127821343458 1.4463187152422485 1.3674453150131292 0.9184568793965336 1.0040819883506225 1.0362395491724765 0.5607830577669244 1.0 20.178183184649416 1.3781559984687697 8.443787560305369 0.7805367525151214 1.0676178787441177 0.12129811633376975 0.2829092730500196 0.5132774242102369 38.572708345577894 0.19633836032619173 0.07189345612472844 23.88669138187464 -1.3781559984687697 0.2870811262289963 ATAPVPTVGEGYGYGHESELSQASAAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATAPVPTVGEGYGYGHESELSQASAAAR 28 0 Q9BWF3;E9PB51 Q9BWF3 RBM4 RNA-binding protein 4 0 309.68 1.2268999999999996e-82 369060000.0 57890.0 105790.0 107220.0 100440.0 102360.0 109610.0 104060.0 103360.0 86732.0 102510.0 False True 57578.32667218364 109311.15619859449 122315.64402705319 113155.69370165482 115394.93926474717 102032.91869418621 99026.22025219651 111073.24805144516 65358.06074925714 95967.7240367736 0.5999759528539029 1.1390408316519818 1.2745498057261775 1.1791015660462576 1.2024348855093125 1.0632003594780315 1.0318700505416898 1.157402128333098 0.681042104574792 1.0 16.55026165828431 1.252666842953476 24.98460750644243 0.8405209861839545 1.0964050953270024 0.20194917547361013 0.18919075315524436 289.00195755428484 511878.48998437374 0.12399312453162643 0.04479781879445555 17.892327668177888 -1.252666842953476 0.2558841091430478 ATATSTTAS(ph)PLRDGFGGQDGGELRPLQSEGAAALVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATATSTTASPLRDGFGGQDGGELRPLQSEGAAALVTK 37 2 M0R0Z6;Q96KS0-2;Q96KS0 M0R0Z6 EGLN2 Egl nine homolog 2 1 ATATS(0.001)T(0.007)T(0.033)AS(0.959)PLRDGFGGQDGGELRPLQSEGAAALVTK;AT(0.036)AT(0.046)S(0.127)T(0.178)T(0.165)AS(0.443)PLRDGFGGQDGGELRPLQS(0.005)EGAAALVTK 132.41 4.8461000000000005e-09 360550000.0 79217.0 80523.0 71514.0 80030.0 62713.0 76833.0 84160.0 96808.0 106778.0 95293.0 True False 78790.50447383618 83203.15937781859 81582.54958916882 90161.78979433914 70699.12882092704 71521.71555542763 80088.85927757886 104032.30454106336 80463.99265189533 89211.31915555804 0.8831895461208117 0.9326524948334975 0.9144865288553023 1.0106541484620777 0.7924905661090916 0.8017112204194066 0.8977432464363371 1.1661334629483724 0.901948243939651 1.0 16.444939150833637 1.8819184061342555 11.095140753489176 1.0395095396654612 0.8898702563357944 0.33664698161653095 0.08416901498654628 0.4938182120474831 43.92330293953121 0.0353473647182918 0.02256104952770604 76.19358464942007 -1.8819184061342555 -0.1496392833296668 ATAVMPDGQFK ddPTM_BT-474_Trastuzumab_2h_R1 3 ATAVMPDGQFK 11 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ;; 113.62 0.0020171 336880000.0 1089560.0 1148090.0 1115360.0 1089710.0 1110660.0 1289990.0 1283900.0 1186970.0 1525370.0 1333740.0 False True 1083693.9300214965 1186303.48161494 1272392.9931170878 1227667.174269517 1252095.9676024236 1200816.0276098303 1221792.8520257075 1275547.7287115313 1149463.0024108093 1248619.5713277375 0.8679136182921873 0.9500920126964431 1.0190397638602369 0.9832195509830584 1.002784191722215 0.9617148851294436 0.9785148976373136 1.0215663425451191 0.9205870457312401 1.0 20.2519025537473 4.648663898612789 3.0701517100655176 0.9876979031595361 0.8599855638637187 0.6144380699543331 0.028190330821412132 0.17971692425126545 2.6827627236203586 0.00653905022436247 0.048930227575117724 44531.14875387531 -4.648663898612789 -0.12771233929581738 ATCAPQHGAPGPGPADASK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATCAPQHGAPGPGPADASK 19 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 83.42299999999999 0.0033590000000000004 55421000.0 40738.0 39791.0 34925.0 35032.0 33363.0 47524.0 43225.0 36712.0 56209.0 44619.0 False True 40518.67113441728 41115.41938083256 39842.136426458055 39467.04760808813 37611.58029200619 44238.77773946271 41134.041614464695 39451.63585975871 42357.045112011634 41771.377219752234 0.9700104193657615 0.9842964756591867 0.9538142881154058 0.944834722601043 0.9004151358031112 1.0590691685057425 0.9847422889138986 0.9444657678440969 1.0140207944109263 1.0 15.350227090092334 2.7533765397422747 24.999458176604996 0.991398445370571 0.9523921513858122 0.3341295419851402 0.03391327892924848 1295.9410274110812 2186686.748129861 0.011057375960375745 0.01168565846184373 566.7304397674728 -2.7533765397422747 -0.039006293984758744 ATCIEMVTSLAYTHHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATCIEMVTSLAYTHHGR 17 0 Q16401-2;Q16401 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 103.5 0.00051815 229840000.0 456590.0 363200.0 275290.0 209790.0 207350.0 209980.0 251470.0 203340.0 428960.0 234100.0 False True 454131.7701719174 375288.892440964 314048.43913642503 236349.39248974665 233754.79344026293 195464.57683975212 239305.43539131136 218514.2633395984 323248.55576951243 219159.5375769066 2.0721515257466505 1.7124004576313232 1.43296724663977 1.0784353494394825 1.0665964895925857 0.8918825938440414 1.091923436402284 0.9970556871745463 1.474946330620356 1.0 17.74162193913326 4.2884587823768126 1.3641606503437846 1.0660724652487774 2.136190486280333 0.8316333710311372 0.14831296236719294 0.22825614462530816 0.6517337807262427 0.041807061713806805 0.2718776467380554 19429.372845643134 -4.2884587823768126 1.0701180210315555 ATDCVGHDVVTLLR ddPTM_BT-474_Trastuzumab_2h_R1 8 ATDCVGHDVVTLLR 14 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;;;;;;; 225.86 2.6183e-12 9161093000.0 5301567.0 6641390.0 6052818.0 6518939.0 6192500.0 6547910.0 6180636.0 5694253.0 6663283.0 6057668.0 False True 5273023.9523314675 6862444.651344963 6905002.162362815 7344236.008998131 6981078.169176894 6095268.393822182 5881655.024357636 6119187.073690855 5021206.188067748 5671062.4420095 0.9298123598975944 1.2100809542335607 1.2175852819416457 1.2950370559481539 1.231000053440286 1.074801848181091 1.0371345906523848 1.0790195199336519 0.885408376192825 1.0 22.435187610705167 2.5183093704091553 3.236404295217269 1.0166367669145613 1.1868835879541686 0.3946533913925244 0.10174916366941311 0.27559811574319015 5.84420919139932 0.03692512507153733 0.03273211495960976 329.84459386298784 -2.5183093704091553 0.1702468210396073 ATDDYHYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATDDYHYEK 9 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 0 ; 96.89 0.007062100000000002 530450000.0 1275930.0 1381720.0 1150350.0 1209700.0 1207720.0 1439360.0 1393610.0 1216560.0 1784280.0 1465690.0 False True 1269060.5346491504 1427709.714932623 1312309.2809785549 1362847.8959666637 1361515.9832827293 1339860.4310889873 1326195.7601928096 1307345.884766507 1344568.1021270647 1372148.4093596586 0.9248711917695431 1.0404921983613225 0.9563901922175977 0.9932219333349407 0.992251256493537 0.97646903348761 0.9665104380448951 0.9527729477721779 0.9798999094817559 1.0 20.388005098843585 2.466581966733172 5.191788748142096 0.9689486734426064 0.9840611914955032 0.0 0.02992871028281406 0.5726552914042732 46.45962053624587 0.00956998244742135 0.008263652430000192 292.80734502714307 -2.466581966733172 0.015112518052896817 ATDFVADR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATDFVADR 8 0 P48735;P48735-2;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 77.732 0.07549700000000001 238850000.0 219840.0 286410.0 282730.0 246400.0 318580.0 387990.0 241790.0 263240.0 388300.0 277990.0 False True 218656.40586652 295942.98371149914 322535.9264667857 277594.2147360387 359149.274628401 361169.16453021904 230093.69397250237 282884.3055056351 292608.6679534256 260248.4402007874 0.8401833482568495 1.1371556482074308 1.2393385574873845 1.0666508299602822 1.3800246962145457 1.3877860872156202 0.8841309242621398 1.0869779095981658 1.1243435992456732 1.0 17.989529991193656 2.2239108973275106 24.99997594931158 1.0318477513443334 1.1807540122487359 0.17824679411940314 0.15853752288112824 452.1164091918772 771538.6664174579 0.06128882478416254 0.04545681413075972 167.45992691327982 -2.2239108973275106 0.1489062609044025 ATDGVTLTGINQTGDQSLPSKPS(ph)SVSSYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATDGVTLTGINQTGDQSLPSKPSSVSSYEK 30 1 Q9UNF0-2 Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 1 ATDGVTLTGINQTGDQSLPS(0.022)KPS(0.536)S(0.43)VS(0.01)S(0.002)YEK 102.53 0.00023209 149830000.0 88374.0 73688.0 63691.0 61276.0 63690.0 83216.0 72267.0 64144.0 104740.0 71112.0 True False 87898.20420327452 76140.66053466334 72658.13918790386 69033.53531723014 71800.54397979422 77463.4737893934 68771.16912325083 68930.75099663221 78928.23044409433 66573.57127795384 1.3203167941267173 1.1437070157580338 1.0913961470467928 1.0369510601888188 1.078514230219332 1.1635769615839402 1.0330100639504785 1.035407139401262 1.1855790357791995 1.0 16.022661941928963 4.765554882946467 1.9025645471769068 1.075706789730797 1.4076110895683875 0.6363952582715805 0.05533254992015368 0.531409751587149 1.8999703722077919 0.0138736171762865 0.31910419621108516 58284.742611885944 -4.765554882946467 0.3319042998375905 ATDIPASAS(ph)PPPVAGVPFFK ddPTM_BT-474_Trastuzumab_2h_R1 4 ATDIPASASPPPVAGVPFFK 20 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 ATDIPAS(0.004)AS(0.996)PPPVAGVPFFK;ATDIPASAS(1)PPPVAGVPFFK;ATDIPAS(0.049)AS(0.951)PPPVAGVPFFK;ATDIPAS(0.11)AS(0.89)PPPVAGVPFFK 264.01 1.6477e-36 1403393000.0 2331157.0 2494130.0 2326943.0 2295449.0 2158745.0 2685796.0 2672995.0 2417464.0 3053336.0 2660689.0 True False 2318606.3097278886 2577145.6093165735 2654556.3482488673 2586052.6080423095 2433648.379865929 2500133.2442037296 2543692.020017492 2597867.4393134606 2300882.2554062344 2490881.550089544 0.930837642458164 1.0346319395331858 1.0657095870951547 1.038207781477744 0.9770229257904465 1.0037142248349196 1.0212015179630076 1.0429510143587801 0.9237220675240541 1.0 21.24822498746596 1.2465989669235538 24.999922065209038 0.9618610266102935 1.0174482859702034 0.21297528919157038 0.0399415457014587 224.4301275389718 698011.720386423 0.027392901007628624 0.009612561980838293 17.64407791496903 -1.2465989669235538 0.055587259359909935 ATDLRPIYISVQPPSLHVLEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATDLRPIYISVQPPSLHVLEQR 22 1 B1ANH0;B1ANG9;Q16774;Q16774-2;B1ANH2;Q16774-3;B1ANH5;B1ANH3 B1ANH0 GUK1 Guanylate kinase 0 ; 208.46 4.124100000000001e-23 1623460000.0 521030.0 782920.0 763060.0 897000.0 834230.0 877270.0 892200.0 691260.0 754640.0 872740.0 False True 518224.83237187524 808979.0189148663 870492.2153635826 1010560.108028519 940464.2456313976 816626.3897714515 849040.8774650173 742845.3313471569 568669.0836579279 817040.9860096948 0.6342703013012938 0.9901327262244187 1.0654204994230896 1.236853628315444 1.151061283014067 0.9994925637203733 1.0391655890013611 0.9091898008386357 0.6960104736424817 1.0 19.640048925916464 1.5887929747781449 4.068151357707191 0.8355844418377532 1.0300337385921507 0.14842149038736197 0.16286855166856168 0.28644384994698097 10.772802777382696 0.09974925224388319 0.04357374908825612 38.79653814485329 -1.5887929747781449 0.1944492967543976 ATDSDLS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATDSDLSSPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 ATDSDLS(0.633)S(0.367)PR 77.062 0.024491 0.0 409350.0 482800.0 426370.0 424850.0 447010.0 496170.0 451600.0 422110.0 497110.0 502790.0 True False 407146.10508306033 498869.70614123734 486399.1899255245 478635.9664391481 503934.0738641518 461870.93575854745 429754.3827204688 453609.9916311485 374603.90143272653 470701.5117398238 0.8649772625079369 1.0598430081460697 1.0333495384955922 1.0168566586285153 1.070602199685938 0.9812395419155625 0.9130082908210667 0.9636892602160954 0.7958417215362282 1.0 18.844452960937623 2.37592968189045 4.125284683464939 0.9203875909461885 1.0147826252376668 0.26019598330511273 0.07200191154228397 0.2882675725010713 9.028431798031844 0.024891837486261437 0.020509813551823273 237.6455475413457 -2.37592968189045 0.09439503429147833 ATDSDLSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATDSDLSSPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 ATDSDLS(0.001)S(0.999)PR;ATDSDLSS(1)PR 168.85 1.9155e-05 557880000.0 1092180.0 1349800.0 1186290.0 1310240.0 1314440.0 1348480.0 1298140.0 1168830.0 1441250.0 1387620.0 True False 1086299.8242326065 1394727.2770286708 1353309.3205824762 1476116.249658066 1481826.1427037313 1255262.7515804798 1235344.0088236239 1256054.0297984777 1086073.2492605597 1299060.9035987502 0.8362193190659976 1.0736427161843596 1.0417597179881584 1.1362948769906205 1.1406902775679508 0.9662847585537078 0.9509515723253519 0.9668938741200417 0.8360449046321407 1.0 20.309037639263295 2.5285420862837467 10.591960197582724 0.9419488669916027 1.0522868400019483 0.2528985421272023 0.08798504915667707 1.0612178815448412 216.2391193206371 0.028687960948138913 0.026979232450308352 337.7085734653829 -2.5285420862837467 0.11033797301034554 ATDSSDPLKPYQDFIIDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATDSSDPLKPYQDFIIDSR 19 1 Q96Q11-2;Q96Q11 Q96Q11-2 TRNT1 CCA tRNA nucleotidyltransferase 1, mitochondrial 0 ;; 102.07 0.00036436 780580000.0 1503090.0 1504460.0 1342010.0 1353290.0 1285370.0 1666930.0 1601390.0 1498180.0 2075840.0 1680230.0 False True 1494997.5304489995 1554535.0416347259 1530953.3430399718 1524616.3752440503 1449054.2505151231 1551699.0526311481 1523924.6477961263 1609981.7992038934 1564277.0468309047 1572996.2828827247 0.9504138990775095 0.9882636459800362 0.9732720666283434 0.9692434698256173 0.9212064047980703 0.9864607243619505 0.9688037183427617 1.0235127804964599 0.994456925202747 1.0 20.585083830876886 1.7558728384884594 24.99999999999989 1.0073592008731946 0.9658245252187168 0.48193636936719275 0.019274922072870865 5.499714893158744 7950.559040980786 0.008849991391025009 0.004907761245231027 56.99973525055558 -1.7558728384884594 -0.04153467565447788 ATDYLTDHEIAHNLFVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATDYLTDHEIAHNLFVTR 18 0 Q6ZNW5 Q6ZNW5 GDPGP1 GDP-D-glucose phosphorylase 1 0 135.04 5.3474e-06 58738000.0 51306.0 49396.0 49943.0 48745.0 48237.0 54116.0 54404.0 37213.0 58555.0 54396.0 False True 51029.774196632505 51040.11599948741 56974.540287662 54916.11200206253 54379.696026901176 50375.088295361624 51772.27067653758 39990.02302378513 44124.904846801066 50924.40070924142 1.002069214088404 1.00227229557215 1.118806299026758 1.0783850420864496 1.0678514674603272 0.9892131786289218 1.0166495816443117 0.7852821528939075 0.866478627774869 1.0 15.636069476853665 1.8726204097274215 6.051799783687421 0.8652868395430996 1.043781807832738 0.5656824649482195 0.06205539789566457 0.14696160518621834 6.5088030884563075 0.027394394908773635 0.01654634051558755 74.57966181955322 -1.8726204097274215 0.1784949682896385 ATEDGEEDEEMIESIENLEDLKGHSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 ;; 299.66 4.923099999999998e-71 189136000.0 236993.0 289636.0 241926.0 255476.0 238268.0 333677.0 354031.0 280094.0 496930.0 353077.0 False True 235717.05602039763 299276.35917134094 275987.07794151193 287819.23540545587 268610.0174749192 310610.69438116957 336905.16800024366 300996.03656851297 374468.2600208498 330543.32357557234 0.7131200033647193 0.9054073636520363 0.8349497879917481 0.8707458746770045 0.8126318044161214 0.9396973777029093 1.0192466281147463 0.9106099415730478 1.1328870780693137 1.0 18.3344798493813 2.4028114768056836 0.7817026039921692 1.0338758707496651 0.8186388895188668 0.6156181707961753 0.0695595311651863 0.46317800123381137 0.5610359840270005 0.051638380961888435 0.03587827403205718 252.82002899854763 -2.4028114768056836 -0.21523698123079837 ATEETGQAQSGQANCQGLS(ph)PVSVASK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATEETGQAQSGQANCQGLSPVSVASK 26 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 ATEETGQAQSGQANCQGLS(0.999)PVS(0.001)VASK;ATEETGQAQSGQANCQGLS(0.993)PVS(0.007)VASK 245.2 1.6517999999999996e-45 449500000.0 494240.0 447760.0 375860.0 395260.0 390430.0 562290.0 509800.0 503060.0 680570.0 558940.0 True False 491579.06675522635 462663.420923364 428777.820966314 445299.87547307956 440148.9462400858 523420.2157882862 485139.0263748779 540600.89168692 512852.64267077827 523267.97066739056 0.9394403906057018 0.884180662411403 0.8194230203301739 0.8509977687056437 0.841153999314553 1.0002909505825504 0.927133043813322 1.033124368375581 0.9800956133750585 1.0 18.997190428452488 2.7352910374161024 24.986454112485998 0.9886356937769718 0.8644549412820461 0.7113064556685842 0.038553302027431374 156.40080142732137 1195226.1421484274 0.012614101766756253 0.012350880284299396 543.614506419149 -2.7352910374161024 -0.12418075249492566 ATENDIANFFS(ph)PLNPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATENDIANFFSPLNPIR 17 0 P31942;P31942-3;P31942-2;P31942-4;P31942-5;P31942-6 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 ATENDIANFFS(1)PLNPIR;ATENDIANFFS(1)PLNPIR 368.97 1.0795999999999993e-104 231270000.0 181050.0 202247.0 181382.0 210045.0 176544.0 206040.0 200571.0 185175.0 232910.0 219792.0 True False 180075.24691654593 208978.6691341065 206919.00899939338 236636.67546360116 199025.8319417304 191796.93976599004 190868.61447437358 198993.69879959713 175512.4513341036 205764.68638660153 0.8751513686766011 1.0156197003671774 1.0056099160310874 1.150035409958518 0.9672497037115017 0.9321178630507659 0.9276062760145323 0.967093539198059 0.8529765452772666 1.0 17.650635880641225 3.008997004951451 24.997521538189535 0.937394659874658 1.0173602377953137 0.20093780957584662 0.07072389303312172 305.6673830485613 849267.1842075469 0.020351670209475904 0.024293454219248195 1020.9324429717212 -3.008997004951451 0.07996557792065573 ATENDIYNFFS(ph)PLNPMR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATENDIYNFFSPLNPMR 17 0 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 1 ATENDIYNFFS(1)PLNPMR;ATENDIYNFFS(1)PLNPMR 202.16 1.137e-11 152247000.0 148804.0 166155.0 144667.0 156927.0 167080.0 156441.0 165406.0 148551.0 164869.0 155113.0 True False 148002.85579767852 171685.36873218164 165034.85613189454 176793.94210991214 188356.64763925297 145626.60189250234 157404.6798677187 159636.6299466935 124239.24408141486 145213.55554107952 1.0192082636239146 1.1822957443088948 1.136497591543427 1.217475472252994 1.2971009967865479 1.002844406294466 1.0839530736728666 1.0993231957710299 0.855562303522475 1.0 17.147816608204863 1.3794581748974208 4.291965589935852 0.9298514608178774 1.1371346490939096 0.44819073934755815 0.08963761815793239 0.1943746891681015 5.562025678680455 0.06713579531013225 0.023188357513792942 23.958420050154746 -1.3794581748974208 0.2072831882760322 ATENDIYNFFS(ph)PLNPVR ddPTM_BT-474_Trastuzumab_2h_R1 6 ATENDIYNFFSPLNPVR 17 0 P52597;P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7 P52597;P31943 HNRNPF;HNRNPH1 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 1 ATENDIYNFFS(1)PLNPVR;ATENDIYNFFS(1)PLNPVR;ATENDIYNFFS(1)PLNPVR;ATENDIYNFFS(1)PLNPVR;ATENDIYNFFS(1)PLNPVR;ATENDIYNFFS(1)PLNPVR 256.33 4.5049999999999996e-27 1270670000.0 1242520.0 1209301.0 1116180.0 1190545.0 1136135.0 1192064.0 1220321.0 1130412.0 1422746.0 1254310.0 True False 1235830.4103769492 1249551.8527471097 1273328.4419895187 1341267.8749306698 1280815.0578502687 1109659.4214968197 1161289.4111510732 1214769.0835558285 1072129.3121196635 1174258.861931181 1.0524343911226761 1.0641195849202296 1.0843677516688341 1.1422250394813511 1.0907433610880704 0.9449870530863004 0.9889552029790276 1.0344985445185608 0.9130263750843185 1.0 20.16331905073416 2.75173447250362 24.331305470821004 0.9841155950059949 1.0884657193438723 0.6801284543566023 0.03768545635990468 350.8409566221184 647981.0197163231 0.012025251635218302 0.012680156601551256 564.591678108736 -2.75173447250362 0.10435012433787738 ATENDIYNFFSPLNPMR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATENDIYNFFSPLNPMR 17 0 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 0 206.49 1.0739e-12 64286000.0 35738.0 45793.0 47527.0 39098.0 41334.0 40290.0 44823.0 32795.0 46198.0 41952.0 False True 35545.590578865056 47317.19232254695 54218.38848791046 44047.80279119172 46597.63989418769 37504.84713245841 42654.74024951186 35242.32942963572 34813.12192148435 39274.58744308582 0.9050531881557106 1.204778850729265 1.3804954301933847 1.1215344490893238 1.1864577816817037 0.9549393023366064 1.0860646292293799 0.8973316264800137 0.8864032492240248 1.0 15.261308500468278 2.564339753352664 1.44771588909214 0.9410184072402149 1.1771094614148967 0.36700520688142835 0.12308202568253672 0.4165254763702478 1.7682811892288781 0.05811154373533317 0.04747392334797345 366.72435495624643 -2.564339753352664 0.2360910541746818 ATENDIYNFFSPLNPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATENDIYNFFSPLNPVR 17 0 P52597;P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7 P52597;P31943 HNRNPF;HNRNPH1 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ; 287.96 1.8490999999999998e-36 395900000.0 198211.0 201705.0 207910.0 196940.0 168696.0 213957.0 211398.0 185819.0 222555.0 188551.0 False True 197143.85399931224 208418.62899175248 237181.9208138839 221872.58380728672 190178.43566047054 199166.65619060324 201171.87112121712 199685.75734976324 167709.3023342127 176517.5137533674 1.1168515225903546 1.1807249295554758 1.3436735866633471 1.2569437394030487 1.0773913115850382 1.1283110211312035 1.1396708850221915 1.1312518123769113 0.9501000709115943 1.0 17.429451806667632 1.7381905268141689 0.6442895775041488 0.9815616828460793 1.2141636845933967 0.5184397996084057 0.07492827708045639 0.6167773175601863 0.5316139161260457 0.07490975383814041 0.039670824906784745 54.72559937429417 -1.7381905268141689 0.2326020017473175 ATENTVNPCPDDTLISFLPLAHMFER ddPTM_BT-474_Trastuzumab_2h_R1 2 ATENTVNPCPDDTLISFLPLAHMFER 26 0 E7EPM6;P33121-2;P33121;B7Z3Z9;D6RER0 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ; 189.88 7.9932e-18 323680000.0 336440.0 452910.0 426170.0 501740.0 473770.0 497680.0 490620.0 400280.0 548280.0 468730.0 False True 334628.64442199806 467984.83556012297 486171.0316639553 565260.232555439 534101.8012452046 463276.5530127059 466886.83624959283 430150.9261806549 413163.740575597 438815.25010005693 0.7625729605926351 1.0664734998462677 1.1079173560014164 1.2881508389385978 1.2171450311342207 1.0557439672095976 1.0639713094363406 0.9802551895873572 0.9415437145390663 1.0 18.743254138877592 1.8497468543664348 2.156730698899022 0.9663843867582876 1.0985131951537812 0.11980782174530868 0.12939560419753837 0.624899834906008 5.45539786459234 0.08497571423452166 0.03973413047874329 70.75332505598725 -1.8497468543664348 0.13212880839549357 ATETDKEPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATETDKEPQR 10 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ;; 112.13 0.001516 938720000.0 1469920.0 1547150.0 1388050.0 1318200.0 1408400.0 1582520.0 1659090.0 1556950.0 2064950.0 1578500.0 False True 1462006.114043465 1598645.9524780766 1583475.374853118 1485083.984841909 1587751.3917591802 1473124.1172513799 1578833.4783607211 1673137.5150319063 1556070.7414123795 1477758.7785781596 0.9893401651453214 1.0818044024859252 1.0715384660930078 1.0049569702240562 1.074432048569423 0.9968637226900868 1.0683972927434149 1.1322128748521003 1.0529937388763602 1.0 20.494979360221595 2.0124840261243 24.870200288936235 1.0823956693679497 1.0397833382162924 0.021148424429747292 0.04439532401226778 365.9012504152651 728931.9204474017 0.015899518274076735 0.011734780241010904 102.91626726518703 -2.0124840261243 -0.0426123311516573 ATEVSKT(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATEVSKTPEAR 11 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 ATEVS(0.002)KT(0.998)PEAR;ATEVS(0.119)KT(0.881)PEAR 144.8 5.9076e-05 886930000.0 1750940.0 1516060.0 1340100.0 1259730.0 1310110.0 1565970.0 1505490.0 1480090.0 1881470.0 1498450.0 True False 1741513.1335877231 1566521.1406223753 1528774.431641988 1419211.6888369722 1476944.742869655 1457718.1797968682 1432663.6971697037 1590541.831544733 1417806.9289063409 1402817.6381124135 1.2414394332331375 1.116696210585316 1.089788430161926 1.0116865159655521 1.0528415830706153 1.0391359077565685 1.0212757939780754 1.133819384880928 1.010685131400327 1.0 20.419896044646396 4.791616007021605 1.4006866027749008 1.0492852165342619 1.3371569482633145 0.7244126508077606 0.03765354936950822 0.7798865989509435 1.2547854247225128 0.01058522718852216 0.3271907148024567 61889.362188848005 -4.791616007021605 0.28787173172905267 ATFAGVQTEDWGQFMHICDIINTTQDGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATFAGVQTEDWGQFMHICDIINTTQDGPK 29 0 J3KQU4;I3L4I4;O75674;O75674-2;I3L3M3;I3L4G0;I3L1G1;I3L367 J3KQU4 TOM1L1 TOM1-like protein 1 0 144.78 6.453899999999999e-08 82304000.0 40690.0 36872.0 39194.0 34865.0 39191.0 44913.0 37554.0 37422.0 64096.0 52506.0 False True 40470.92956108398 38099.2622304053 44712.17451964492 39278.905425211 44181.74154674385 41808.27002382986 35737.36954978849 40214.619665065635 48300.39964239708 49155.022127351775 0.8233325469009275 0.7750838181233446 0.9096155913388414 0.799082244810031 0.8988245683681505 0.8505391354623377 0.7270339428837898 0.8181182293210413 0.982613730032701 1.0 15.585051202587012 1.2279387544697395 8.212968299787882 0.9926048078351564 0.8235397974576079 0.627272448669035 0.051213424567245695 0.0937078174272175 41.58244619722531 0.043445581123671195 0.012504463000272565 16.90202557324239 -1.2279387544697395 -0.1690650103775485 ATFHTPFSHLGQSPEGCSSYTFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATFHTPFSHLGQSPEGCSSYTFPK 24 0 A0A0C4DGA2;O75521-2;O75521 A0A0C4DGA2 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial 0 127.8 4.7472e-05 618830000.0 157170.0 231160.0 214050.0 227110.0 216230.0 277830.0 252570.0 171900.0 321310.0 249750.0 False True 156323.8141832286 238854.0208608292 244186.37944404726 255862.10271388714 243765.6088043789 258624.26604147226 240352.22418890314 184728.05089051308 242127.45583341553 233810.74117826734 0.6685912434794457 1.021569922994755 1.0443762258889084 1.09431286785412 1.0425766052318424 1.106126539517216 1.0279776839065247 0.7900751264017785 1.0355702848091446 1.0 17.834981682701027 4.739906581690541 24.622938989789045 1.0085971331828532 0.6685911122134512 0.6147044954245666 0.08269894275520272 75.29612940344518 1377278.5746219982 0.023128334926424875 0.14450594659604754 54942.26783461842 -4.739906581690541 -0.3400060209694019 ATFIKVPQNQNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATFIKVPQNQNGK 13 1 P19338;H7BY16 P19338 NCL Nucleolin 0 169.62 2.5712e-05 481370000.0 159550.0 224090.0 233250.0 215870.0 210210.0 232500.0 243800.0 204630.0 342400.0 244150.0 False True 158691.00052767148 231548.70018473413 266089.5725546553 243199.11986635032 236978.99748771498 216427.82224613018 232006.46259355667 219900.52969008565 258020.10792493675 228568.13797266857 0.6942831224649835 1.0130401474085682 1.1641586395846364 1.0640114673175982 1.0367980401365136 0.9468853540383214 1.015042886779343 0.962078667834187 1.1288542235741972 1.0 17.80226478265871 4.734009453746951 5.387143046012676 1.0341949301223836 0.6818992582881878 0.7200543509599118 0.06416250967990568 0.07931698430620979 8.534832782802251 0.016075825337532896 0.10312852221401093 54201.26888362066 -4.734009453746951 -0.35229567183419586 ATFPDKEPT(ph)PPPITSSHLPSHFMK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATFPDKEPTPPPITSSHLPSHFMK 24 1 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 ATFPDKEPT(1)PPPITSSHLPSHFMK 165.98 7.5185e-12 877000000.0 679240.0 585890.0 644140.0 620380.0 666900.0 880550.0 1026900.0 495860.0 1172600.0 761210.0 True False 675583.047310659 605390.9944720156 734829.313034751 698920.044391005 751825.7619740106 819679.651091742 977224.9238610486 532863.5911260609 883628.4420349909 712628.9260953313 0.9480151907562105 0.8495178518631027 1.0311528007445068 0.9807629451986454 1.0550031502277748 1.1502194495288984 1.371295618345867 0.7477434210336524 1.2399559008593826 1.0 19.442791519074625 3.8070579226966252 1.374032046826373 1.077950095802584 0.9018375886566697 0.1680565536368861 0.1572930076649547 0.9241030558405424 3.293506675141602 0.04955651279949955 0.13862705065343303 6412.951016521189 -3.8070579226966252 -0.1761125071459143 ATFVANDLDWLLALPHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATFVANDLDWLLALPHDK 18 0 Q9H1I8;B1AH59 Q9H1I8 ASCC2 Activating signal cointegrator 1 complex subunit 2 0 ; 124.18 3.24e-05 119964000.0 303570.0 293190.0 285310.0 265450.0 257440.0 339610.0 324500.0 301750.0 359570.0 316720.0 False True 301935.61284979776 302948.65191290237 325479.1680410233 299055.9427827982 290223.45803357265 316133.560055949 308802.6952896189 324268.11725545296 270958.79149114963 296506.65844236553 1.018309721730878 1.0217263028910666 1.0977128464866814 1.0085977304989533 0.9788092434692687 1.0661937971871838 1.041469682036309 1.093628449893592 0.9138371222911952 1.0 18.17770497716398 1.2352144044764684 24.999998588355343 0.95691856595103 1.0423447011151938 0.41029268213584347 0.04019409002522249 85.79114083936344 640906.3303663839 0.03355427656742742 0.009736595715755228 17.18756701371608 -1.2352144044764684 0.08542613516416386 ATGAALT(ph)PTEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ATGAALTPTEER 12 0 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 ATGAALT(0.777)PT(0.223)EER 98.654 0.0042637000000000005 0.0 88675.0 86703.0 103200.0 96491.0 97119.0 107430.0 111360.0 89942.0 121810.0 121280.0 True False 88197.58365271869 89588.8569419298 117729.66296951952 108706.7507065548 109486.52898058789 100003.61696301827 105973.09136348857 96653.92875622185 91791.55767037549 113539.8065669681 0.7767987837877631 0.7890524006581644 1.0369020921317156 0.9574329391026163 0.9643008235707228 0.8807802301832715 0.9333562788922268 0.8512779057731915 0.8084526515045185 1.0 16.792838663304977 -4.9999999847127485 0.00825010663277263 1.9380796878510036 1.4511704311087785e-13 0.082403722489925 0.08345378206326651 77532.93275207741 48.607119336409326 6462.863938180043 5038.099431013069 1.0000000352001979e-05 4.9999999847127485 -1.9380796878508584 ATGDWK ddPTM_BT-474_Trastuzumab_2h_R1 3 ATGDWK 6 0 P30050 P30050 RPL12 60S ribosomal protein L12 0 ;; 144.66 0.026160000000000003 2389150000.0 2238300.0 2289180.0 2168280.0 1995680.0 2060020.0 1945480.0 2349760.0 2247200.0 2994670.0 2372710.0 False True 2226249.241498506 2365373.9724614667 2473554.9769723825 2248332.88337832 2322351.336304846 1810993.5467673144 2236093.1318451012 2414897.4750503874 2256673.7050221097 2221281.616420768 1.0022363778824868 1.0648690174967008 1.1135710837773518 1.0121782248399194 1.0455006331196022 0.8152921868976858 1.0066680043245482 1.0871640305300863 1.0159331839509707 1.0 21.0829608802 5.1491743262028224 11.544659916207763 1.0212527857441558 0.0003395802571177244 0.00205193841527862 0.07651934848567325 238034.7232171113 194262.80882243149 0.019278787407827444 6272886.286663113 140985.46017857787 -5.1491743262028224 -1.020913205487038 ATGEADVEFVTHEDAVAAMSK ddPTM_BT-474_Trastuzumab_2h_R1 5 ATGEADVEFVTHEDAVAAMSK 21 0 P31942;P31942-3;P31942-2;P31942-4;P31942-5;P31942-6 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ;;;; 237.09 7.547699999999998e-30 1116115000.0 2107767.0 2077344.0 1866452.0 1803507.0 1881898.0 2186104.0 2030860.0 2081291.0 2801659.0 2315873.0 False True 2096419.016666931 2146487.1392590357 2129232.218108389 2031830.8012822617 2121546.555416657 2034983.776015286 1932619.5431614053 2236607.5030015516 2111227.6797572165 2168072.0024213707 0.9669508274289713 0.9900442129513096 0.9820855652996745 0.9371602045564214 0.9785406356648891 0.9386144803966623 0.8914000738919166 1.0316112659098213 0.973781164739608 1.0 21.047981239213062 1.6716272271877746 14.982464944708907 1.0018524237522366 0.9569842819505561 0.3369422562167741 0.029998522185430518 0.16278498176603676 36.51291633780021 0.014277601846571699 0.007871451782693434 46.94909522171221 -1.6716272271877746 -0.04486814180168053 ATGEGFVEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATGEGFVEFR 10 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 ;; 124.81 0.00099063 648800000.0 834780.0 982220.0 742140.0 873430.0 963940.0 977020.0 822810.0 1199180.0 924460.0 1116100.0 False True 830285.6372327767 1014912.5989354716 846626.8612034805 984006.1484452041 1086692.0452799958 909480.9070576938 783007.5368605604 1288668.9009126571 696639.2201293433 1044869.5424587167 0.7946309117968972 0.9713294891793358 0.8102703991268184 0.9417502458055262 1.0400265307024503 0.8704253211530739 0.7493830617533743 1.233329950340258 0.6667236356512592 1.0 19.994891394695493 6.379018660067413 0.6109263381165417 0.9450315620631315 1.3167775483654139e-11 0.03188078425447172 0.15371782363351158 77.31470195438743 4.399191835441764 0.06341479882678136 79.51545867902036 2393418.5907600853 -6.379018660067413 -0.9450315620499637 ATGEPGTFVCTSHLPAAASAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 ATGEPGTFVCTSHLPAAASAS(1)PK;ATGEPGTFVCTSHLPAAASAS(1)PK;ATGEPGTFVCTSHLPAAAS(0.002)AS(0.998)PK;ATGEPGTFVCTSHLPAAAS(0.002)AS(0.998)PK 263.49 4.4531999999999993e-44 4310380000.0 5102360.0 4103880.0 3544530.0 3322440.0 3345420.0 5224170.0 5041670.0 4417680.0 6907500.0 4726350.0 True False 5074889.460685492 4240475.164952151 4043569.014392937 3743060.5633425494 3771439.4071421493 4863035.424273395 4797785.161050279 4747349.714124509 5205239.180757893 4424710.296568189 1.1469427647323223 0.9583622159943599 0.9138607373976856 0.8459447765982944 0.8523584945363051 1.099063011660938 1.084316223995828 1.07291763662054 1.1764022572946942 1.0 22.07715156861322 2.7192605486820223 24.365107791122263 1.089270341502856 0.9372541503350275 0.3997782396098454 0.0874390153449957 599.918040670718 757357.1402340956 0.029187141720747427 0.027561494533047917 523.9146573280165 -2.7192605486820223 -0.1520161911678285 ATGHSGGGCISQGR ddPTM_BT-474_Trastuzumab_2h_R1 6 ATGHSGGGCISQGR 14 0 Q9HA64;I3L3W5;I3L139;I3L407 Q9HA64 FN3KRP Ketosamine-3-kinase 0 ;;;;; 239.49 2.3119e-17 699525000.0 342646.10000000003 415960.3 403194.5 414567.60000000003 395950.89999999997 424767.7 438392.6 353575.5 410244.4 444220.39999999997 False True 340801.3314691606 429805.2871321887 459960.78097058105 467051.81565342617 446372.9001301474 395404.5086946128 417185.8751156364 379961.09923000983 309145.1646133207 415869.8737557813 0.8194903092915442 1.0335090716010629 1.1060209214401813 1.123072011529504 1.073347525991457 0.950789017544496 1.0031644546597476 0.9136538210823638 0.7433699436349784 1.0 18.665772652190114 1.6805316970167543 2.810098765714746 0.8611333689237346 1.025981800588387 0.2616339658477179 0.10012165460021295 0.2769205500061524 4.9589189222661565 0.063565096744267 0.027474212959081718 47.92164272803583 -1.6805316970167543 0.16484843166465235 ATGKVMVMKELIRCDEETQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATGKVMVMKELIRCDEETQK 20 3 B5MC51;P53671-3;P53671-2;P53671 B5MC51 LIMK2 LIM domain kinase 2 0 55.33 0.043688 94689000.0 178720.0 97850.0 66334.0 56221.0 54582.0 80913.0 72685.0 56163.0 152930.0 72648.0 False True 177757.79137765878 101106.87809842594 75673.25061453601 63338.57283553099 61532.69416713973 75319.67475871451 69168.94886633576 60354.16824993538 115242.45065701121 68011.54244291795 2.6136415230819208 1.4866135139235355 1.1126530570608442 0.931291521416251 0.9047389892500097 1.1074542945696353 1.0170177940661942 0.8874106671024348 1.6944543016905422 1.0 16.05349199079519 4.757107704070063 1.956824995517875 1.0513601812992632 3.1351195627782604 0.8142140293506671 0.2204047425037772 0.3064809276048506 1.1980308503452342 0.05443552631678318 1.1711560650749235 57162.03796838621 -4.757107704070063 2.0837593814789974 ATIAGGGVIPHIHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATIAGGGVIPHIHK 14 0 Q71UI9;P0C0S5;Q71UI9-4;Q71UI9-3 Q71UI9 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z 0 ; 141.38 5.603200000000002e-06 9878200000.0 6458800.0 8083700.0 7666800.0 7377700.0 6957900.0 8352100.0 8357900.0 369580.0 10426500.0 4060900.0 False True 6424026.5384401465 8352761.067800162 8746218.798979774 8311716.063547386 7843947.322295664 7774738.985728621 7953596.446721439 397159.93628921383 7857028.78294204 3801729.8852885906 1.6897640632752362 2.1970948278368025 2.300589221981468 2.186298425806346 2.063257400966094 2.0450529680749368 2.092099303924555 0.10446821533168059 2.066698324188177 1.0 21.858224600785064 1.7744721568844746 24.999999999999996 0.9716599401210337 2.0967220426053 0.5002016367097615 0.46701391312162716 27.726737216192756 19310.542694989006 0.2000633601093425 0.11102715142574904 59.4938613341916 -1.7744721568844746 1.1250621024842662 ATIS(ph)DEEIER ddPTM_BT-474_Trastuzumab_2h_R1 5 ATISDEEIER 10 0 C9J0A7;Q9UQN3;Q9UQN3-2 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 ATIS(1)DEEIER;AT(0.003)IS(0.997)DEEIER;ATIS(1)DEEIER;AT(0.422)IS(0.578)DEEIER;ATIS(1)DEEIER 289.85 4.5953999999999994e-32 11945950000.0 2880813.0 3185590.0 2910253.0 2974434.0 2944170.0 2982520.0 3333630.0 2904408.0 3342120.0 3027010.0 True False 2865303.022896417 3291620.437420176 3319991.326027452 3350997.039424413 3319092.5980372224 2776345.412496896 3172369.581196711 3121149.6732449853 2518499.3081135848 2833823.6302463543 1.0111084516037174 1.161547388583962 1.171558910932941 1.1825002105487767 1.1712417676991005 0.9797170800836108 1.1194661330849744 1.1013916462308746 0.8887283178927556 1.0 21.43431854081692 1.2975962948450435 7.301803319915116 0.9451527354646403 1.116043432708 0.4811530598547422 0.06970686550893279 0.16455163647700083 16.674554879197704 0.048232073798751406 0.017312658707482515 19.842495699170538 -1.2975962948450435 0.1708906972433597 ATLDEEDLVDS(ph)LSEGDAYPNGLQVNFHSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 30 0 B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892;E9PN99;E9PHZ1 B4DKB2 ECE1 Endothelin-converting enzyme 1 1 ATLDEEDLVDS(0.5)LS(0.5)EGDAYPNGLQVNFHSPR 140.88 3.4574e-08 157220000.0 31279.0 49064.0 47278.0 48251.0 58272.0 60423.0 60185.0 43740.0 44691.0 44352.0 True False 31110.597339423606 50697.06558018571 53934.33145225725 54359.571652713516 65692.59379479618 56246.10023044268 57273.62162097299 47004.10090721959 33677.501878718926 41521.41738834243 0.7492662653697904 1.2209859096577815 1.2989520793044957 1.3091935456898813 1.5821375551895311 1.3546286174285167 1.3793753976484713 1.1320447100251563 0.8110874820033055 1.0 15.341568072383737 1.452476812931861 4.150785334405635 0.9118434650573324 1.2852888126052313 0.33388160852694315 0.2033315974524047 0.23057795869087608 7.5704066852522 0.14473037994644952 0.05387201704094467 28.34502294812518 -1.452476812931861 0.37344534754789893 ATLDMPDEEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATLDMPDEEFR 11 0 A0A3B3IT54;Q9H7E9;Q9H7E9-2 A0A3B3IT54 C8orf33 UPF0488 protein C8orf33 0 129.16 0.00058361 70967000.0 73847.0 113110.0 92811.0 92929.0 99566.0 100720.0 91416.0 84284.0 90869.0 91963.0 False True 73449.41595717309 116874.79797356123 105877.98207232644 104693.80187177495 112245.13992608263 93757.46346937737 86993.85883696718 90573.70006547993 68475.55253221706 86093.84260651452 0.8531320444467575 1.3575279536276337 1.2297973800081599 1.2160428516388815 1.3037533989403942 1.0890147382303386 1.0104538977841437 1.052034586020748 0.7953594642671423 1.0 16.393622439950878 2.134765637082178 1.4171814024077785 0.9401882991423943 1.203109316781143 0.365257262917025 0.14060840418408316 0.4371339315433724 1.6745435994969735 0.08584560127874585 0.04569448096850805 136.3846950835375 -2.134765637082178 0.26292101763874876 ATLENITNLRPVGEDFR ddPTM_BT-474_Trastuzumab_2h_R1 5 ATLENITNLRPVGEDFR 17 1 Q9NWV4 Q9NWV4 C1orf123 UPF0587 protein C1orf123 0 ;;;; 100.35 0.0012359000000000005 2944253000.0 2603990.0 3152650.0 2950850.0 2971360.0 2859150.0 3020030.0 3071190.0 2637070.0 3363500.0 2992360.0 False True 2589970.407170487 3257584.0494328286 3366304.030752008 3347533.871339594 3223245.8049902464 2811262.4344859337 2922624.806614871 2833861.554170134 2534610.493590903 2801385.022911717 0.924532110362506 1.1628476709877407 1.201657038650518 1.1949567246062514 1.1505900754906062 1.003525902899256 1.043278514988682 1.011593026661027 0.9047704877626808 1.0 21.41770885065577 2.733503729691588 22.78467909792748 0.9990779843328013 1.1368451297902165 0.4074356956381352 0.08033944704919908 126.64775257921005 570630.0301222701 0.02605046470971647 0.02531899696064418 541.3818972137782 -2.733503729691588 0.1377671454574152 ATLGETHR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATLGETHR 8 0 P04062-4;P04062-5;P04062-2;P04062;A0A0G2JNZ5;A0A0G2JNZ0;A0A0G2JLB3;P04062-3 P04062-4 GBA Glucosylceramidase 0 ;; 184.49 0.00021773 497070000.0 514859.0 717502.0 633543.0 650807.0 637335.0 618507.0 628979.0 555077.0 666115.0 577266.0 False True 512087.0563502126 741383.6203308814 722740.3475455276 733199.0994712552 718495.8344694951 575751.0668988702 598552.8828368855 596499.6643638934 501959.8837337014 540424.3896577128 0.9475646661220303 1.371854480513823 1.3373570130750165 1.3567098626611571 1.3295029762157238 1.0653683992011023 1.1075608249583062 1.1037615543993062 0.9288253700977975 1.0 19.043733260211102 2.7293891623854964 23.221644018006533 1.057627380752332 1.283049352698465 0.4494101491098237 0.12472448464593688 235.63450557166064 596612.2024142415 0.0395838646205101 0.0378714762985613 536.2769890938814 -2.7293891623854964 0.225421971946133 ATLLNVPDLSDS(ph)IHS(ph)ANASER ddPTM_BT-474_Trastuzumab_2h_R1 2 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 ATLLNVPDLS(0.008)DS(0.992)IHS(1)ANASER;ATLLNVPDLS(0.002)DS(0.998)IHS(1)ANASER 141.38 8.2581e-08 72931000.0 97524.0 81822.0 67965.0 77716.0 65408.0 90735.0 58818.0 75017.0 102383.0 78973.0 True False 96998.94161993495 84545.39580755646 77533.88123762993 87554.83763159899 73737.32109641045 84462.70301721554 55972.7486334201 80615.14946860752 77152.08151191237 73932.8755278131 1.3119865949680876 1.1435426419435153 1.048706420305026 1.1842476977466052 0.9973549732780368 1.1424241572403224 0.7570752284937639 1.0903829844719157 1.0435422802253678 1.0 16.173928405818543 7.999999999999971 0.43217519900221807 0.9960582383457182 7.11467131367025 0.42789678741599646 0.10477769182618893 76.09803196210423 0.9531948949907243 0.06384618749021864 405.951482616047 99999999.99999325 -7.999999999999971 6.118613075324532 ATLLNVPDLSDS(ph)IHSANASER ddPTM_BT-474_Trastuzumab_2h_R1 3 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 ATLLNVPDLS(0.01)DS(0.989)IHS(0.001)ANASER;ATLLNVPDLSDS(1)IHSANASER;ATLLNVPDLSDS(1)IHSANASER 220.41 3.0233e-25 819920000.0 584219.0 680679.0 669958.0 684314.0 663505.0 546847.0 659698.0 676559.0 541795.0 737303.0 True False 581073.6298168334 703334.9890358556 764282.2630206732 770948.0822357053 747998.4288477532 509044.75402937445 627785.8874489102 727047.268076991 408276.8819310492 690247.6913031446 0.8418334999712968 1.0189602919323106 1.1072579780422822 1.116915118948393 1.083666687005615 0.7374812845347295 0.9095081307170902 1.0533135818308512 0.591493295921422 1.0 19.39675463182303 2.7653092163600252 24.63084027226897 0.8818296948783647 1.0416130184662893 0.2681784258746077 0.141930241494342 948.3024068520737 873220.8955455836 0.04371436722184715 0.0463533398538121 582.5178210852544 -2.7653092163600252 0.15978332358792458 ATLLNVPDLSDS(ph)IHSANASERDDISEIQSLASDHSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR 37 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 ATLLNVPDLS(0.042)DS(0.5)IHS(0.131)ANAS(0.131)ERDDIS(0.131)EIQS(0.049)LAS(0.012)DHS(0.004)GR 59.187 0.012894 90490000.0 8400.9 16768.0 14797.0 16296.0 21030.0 17794.0 15895.0 17052.0 11754.0 18767.0 True False 8355.670487827736 17326.11274352995 16880.288982170365 18359.071929133483 23708.04584542428 16563.94266257048 15126.09812520338 18324.50682830151 8857.384195530698 17569.273992762937 0.4755842780566556 0.9861598578670269 0.9607846624239353 1.0449533621421054 1.3494038430495192 0.9427790055180101 0.8609404197028323 1.04298600134813 0.5041405922167982 1.0 14.100766956286687 -4.98196255216927 15.09242358489954 0.9139659968573789 0.9391092744973739 0.0 0.24635406475625957 0.0 0.0 0.0 0.05289241745707886 1.0424073089823004e-05 4.98196255216927 0.02514327763999502 ATLLNVPDLSDSIHS(ph)ANASER ddPTM_BT-474_Trastuzumab_2h_R1 2 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 ATLLNVPDLSDS(0.002)IHS(0.998)ANASER;ATLLNVPDLSDSIHS(1)ANASER 229.7 7.7287e-26 466960000.0 167040.0 167313.0 153271.0 172037.0 153731.0 202054.0 132869.0 183992.0 205250.0 182446.0 True False 166140.67519988868 172881.91206215566 174850.2245445859 193816.86656064878 173307.73161497494 188086.482563955 126441.61886112904 197722.4173324449 154668.88770909252 170802.140080121 0.9727083930093283 1.0121764983802841 1.0237004317543446 1.1347449538380017 1.014669555859655 1.1011951166169591 0.7402812330209503 1.1576108896510076 0.9055442024118633 1.0 17.3819665258802 ATLLNVPDLSDSIHSANASERDDISEIQSLAS(ph)DHSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR 37 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 ATLLNVPDLSDSIHS(0.001)ANAS(0.001)ERDDIS(0.002)EIQS(0.169)LAS(0.554)DHS(0.274)GR;ATLLNVPDLSDSIHSANASERDDIS(0.021)EIQS(0.278)LAS(0.401)DHS(0.3)GR 120.38 1.7532e-07 291360000.0 41136.0 86292.0 85868.0 102442.0 98104.0 93219.0 116721.0 80396.0 73630.0 106046.0 True False 40914.52834663926 89164.17705538443 97957.46802196429 115411.14669638501 110596.96289203528 86774.98994392267 111074.75931247954 86395.55776261612 55484.87309145184 99278.05348945175 0.41212057356650744 0.8981257581249624 0.9866981128147545 1.1625041249287527 1.114012201133518 0.8740601461645546 1.1188249105254786 0.8702382321768186 0.5588835713559501 1.0 16.599187208871015 4.738893151790959 3.4187191335710416 0.9679795360115527 0.34103292980496086 0.49797301955676954 0.16404733275582628 0.257335262015201 5.105611345283881 0.04070678211220652 0.4208974785187671 54814.20905248816 -4.738893151790959 -0.6269466062065918 ATLLPEAGRS(ph)PEEAGFPGDPHEDKQ ddPTM_BT-474_Trastuzumab_2h_R1 2 ATLLPEAGRSPEEAGFPGDPHEDKQ 25 2 Q8IV56 Q8IV56 PRR15 Proline-rich protein 15 1 AT(0.01)LLPEAGRS(0.99)PEEAGFPGDPHEDKQ;AT(0.049)LLPEAGRS(0.951)PEEAGFPGDPHEDKQ 124.8 7.7414e-05 1905630000.0 938840.0 948620.0 843880.0 849230.0 840220.0 913760.0 931690.0 928410.0 1302550.0 985160.0 True False 933785.3897549288 980194.2432471015 962690.9688635493 956742.4309264865 947217.0366258869 850593.9219596728 886620.5952985686 997692.6685704546 981554.0057757793 922286.2453620906 1.0124680861832906 1.0627874460626658 1.0438093094249667 1.037359535326116 1.0270315115173472 0.9222667325215597 0.9613290881839839 1.081760325048282 1.064261785006259 1.0 19.81485505662378 -2.1392778663838476 8.318610243870586 0.6482608746174278 1.024413067713277 0.022752518836453572 0.04632067294598778 0.11096916142547528 0.001857948858788607 0.016470821619600458 0.011418115894502034 0.007256415354482824 2.1392778663838476 0.37615219309584924 ATLPDADKER ddPTM_BT-474_Trastuzumab_2h_R1 4 ATLPDADKER 10 1 P12814-3;P12814;P12814-2;P12814-4;H9KV75;H7C5W8 P12814-3 ACTN1 Alpha-actinin-1 0 ;;; 136.96 9.4793e-05 3200620000.0 4491810.0 3878610.0 3412400.0 2873600.0 2897180.0 4103360.0 3754010.0 3652940.0 5056840.0 3863430.0 False True 4467626.594047009 4007707.189180742 3892836.258887487 3237397.4653631537 3266118.700068775 3819704.381470455 3572414.194589164 3925540.932053472 3810649.5401843963 3616862.5897511663 1.2352215444143744 1.1080617772256771 1.0763019501814437 0.8950844509649677 0.9030253760050857 1.0560822499295568 0.9877107868880747 1.0853442271146778 1.053578742798344 1.0 21.78630735812509 4.486846571397296 1.8340764542486663 1.004879759040859 1.248338500900751 0.5877421129816034 0.061134504563014204 0.4053322165800411 2.0271195977418843 0.017849401197670818 0.14345558348054482 30679.37948393649 -4.486846571397296 0.24345874185989214 ATLPSPDKLPGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATLPSPDKLPGFK 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ; 145.43 3.8119e-05 2197740000.0 1781830.0 1606200.0 1424810.0 1380560.0 1323950.0 1834040.0 1814960.0 1711100.0 2411510.0 1897570.0 False True 1772236.825259923 1659661.3960315958 1625410.8633294688 1555338.7544479938 1492547.1848335466 1707257.1316657742 1727163.4509795005 1838790.9707897434 1817225.6730784618 1776465.4580085871 0.9976196369427839 0.9342491792055848 0.9149690223369442 0.8755243438234506 0.8401779939513645 0.9610415580945799 0.9722471344394424 1.0350839992414054 1.0229445581877887 1.0 20.760578206181208 2.194943509156876 2.2322865962501597 1.0200139847294434 0.9122322968318392 0.5519246789685333 0.04057229103403416 0.2326604843905344 2.3348590972066625 0.020446264191471143 0.013302395160089006 156.65472882583342 -2.194943509156876 -0.10778168789760423 ATLVDHGIR ddPTM_BT-474_Trastuzumab_2h_R1 4 ATLVDHGIR 9 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;; 209.21 8.7881e-06 1679060000.0 1281930.0 1667230.0 1546130.0 1488350.0 1365340.0 1491650.0 1580040.0 1289840.0 1929020.0 1524540.0 False True 1275028.2313158126 1722722.7426881804 1763811.6647971245 1676774.9573960365 1539207.955995796 1388535.7464664099 1503607.4288610488 1386094.4104748084 1453638.868543697 1427242.551975638 0.8933507689711709 1.2070287144280618 1.2358177398477899 1.174835317987813 1.0784487569160348 0.9728800087583931 1.053505185071524 0.9711694824093698 1.0184946255501706 1.0 20.444799103014176 2.9745151441465643 4.251230379151165 1.0038709769806948 1.1405793041671926 0.2967439241372821 0.08980163459383701 0.24600362493384523 10.312328206412298 0.027452924505414082 0.0307831363074493 943.0074942049182 -2.9745151441465643 0.13670832718649772 ATLYVTAIEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 ATLYVTAIEDR 11 0 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6;H0YDE4;E9PNR9 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ;;; 213.8 3.0188000000000004e-09 1064790000.0 673500.0 814670.0 737880.0 806250.0 747110.0 678740.0 742360.0 660080.0 783200.0 750790.0 False True 669873.950832885 841785.798471585 841767.0902320658 908321.1673333254 842250.0300320941 631820.3013820999 706449.210709405 709338.5214183244 590190.8543423212 702873.9394163417 0.9530499187224675 1.197634100889548 1.1976074841116735 1.2922959813926016 1.1982945771634224 0.898909841367509 1.0050866465415293 1.00919735622486 0.8396823686938923 1.0 19.42290643928674 2.7453463542006826 24.616320241303182 0.960513998392522 1.1780102192192579 0.5673586696095907 0.09442472022319924 330.234217530475 1197976.5739767556 0.02949931791014244 0.03063672105566302 556.347773316135 -2.7453463542006826 0.2174962208267358 ATMAQNENVVVQPVVAENIPVIPLS(ph)DSPPPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 ATMAQNENVVVQPVVAENIPVIPLS(0.442)DS(0.442)PPPS(0.117)R;ATMAQNENVVVQPVVAENIPVIPLS(0.523)DS(0.379)PPPS(0.097)R 114.35 1.5353e-06 216774000.0 261036.0 313696.0 281141.0 295063.0 306226.0 296738.0 295821.0 282263.0 311999.0 305730.0 True False 259630.61117982617 324137.18172676355 320723.2090786212 332417.9455465087 345222.06595629535 276225.2005061167 281511.00808403804 303326.898362472 235111.02702240765 286218.04965137795 0.9071077505281863 1.132483371057738 1.1205554977027883 1.1614150328793156 1.2061505777737849 0.9650865864069968 0.9835543510513288 1.0597755757609737 0.82144025266324 1.0 18.126755129455397 2.713072512818616 24.53771737115001 0.978574468556328 1.1109772608774084 0.35793376468144167 0.09255783437359164 721.0908962755149 694201.9881844813 0.029939923800475467 0.02823791450951615 516.5026009292509 -2.713072512818616 0.13240279232108043 ATMAQNENVVVQPVVAENIPVIPLSDS(ph)PPPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 ATMAQNENVVVQPVVAENIPVIPLS(0.184)DS(0.631)PPPS(0.184)R;ATMAQNENVVVQPVVAENIPVIPLS(0.172)DS(0.657)PPPS(0.172)R 111.05 2.2832e-06 192824000.0 174266.0 188161.0 188050.0 178170.0 182386.0 192416.0 178794.0 187286.0 204004.0 195718.0 True False 173327.7712187728 194423.8251392737 214525.80544009848 200726.30373181822 205611.7760134831 179114.73481854357 170145.05116059227 201262.23233903784 153729.94771354803 183227.10967738988 0.9459723046657945 1.0611083997428001 1.1708191316111278 1.0955054854341117 1.122168964928313 0.9775558602322166 0.9286019490247304 1.09843042709893 0.8390131132026377 1.0 17.483273450053005 2.726104404558922 24.00460847636687 0.9816546025041615 1.084119769383448 0.30939668314522273 0.08115388366776065 612.028203071856 1179449.2066569433 0.026352925272705777 0.025024993733629958 532.2361936721863 -2.726104404558922 0.10246516687928642 ATNES(ph)EDEIPQLVPIGK ddPTM_BT-474_Trastuzumab_2h_R1 9 ATNESEDEIPQLVPIGK 17 0 O76021;J3QSV6;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AT(0.009)NES(0.991)EDEIPQLVPIGK;AT(0.012)NES(0.988)EDEIPQLVPIGK;AT(0.02)NES(0.98)EDEIPQLVPIGK;AT(0.005)NES(0.995)EDEIPQLVPIGK;ATNES(1)EDEIPQLVPIGK;AT(0.002)NES(0.998)EDEIPQLVPIGK;AT(0.015)NES(0.985)EDEIPQLVPIGK;AT(0.039)NES(0.961)EDEIPQLVPIGK;ATNES(1)EDEIPQLVPIGK 307.02 2.4699e-47 13458730000.0 9459070.0 9125120.0 8841240.0 8126960.0 7520880.0 10038710.0 9489630.0 9367890.0 12308700.0 10342070.0 True False 9408143.418121463 9428844.10294848 10086009.742564308 9155832.302724028 8478619.488251757 9344757.606281497 9030580.342993002 10066969.520981546 9275385.813129874 9682030.238308415 0.9717118400329636 0.9738498921064958 1.0417246687226287 0.9456521078087109 0.8757067763230917 0.9651650920596748 0.9327155690200334 1.0397581161387062 0.958000087257568 1.0 23.20687816926447 1.7484668950995372 24.999999999993264 1.001927057729896 0.9585258681640016 0.1610459304634867 0.04293041515495361 4.645723009182353 11748.570046579269 0.020926762901822025 0.011604746972523677 56.03597012810794 -1.7484668950995372 -0.04340118956589434 ATNS(ph)PKPHMVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATNSPKPHMVPR 12 1 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 AT(0.06)NS(0.94)PKPHMVPR 78.32600000000002 0.015765 140080000.0 83284.0 60079.0 55692.0 54738.0 58134.0 77666.0 81100.0 66859.0 112820.0 80894.0 True False 82835.60819772237 62078.6931964776 63532.94951645819 61667.82518758642 65537.02031278632 72297.13222609858 77176.88316791403 71848.35808312282 85017.02271054739 75731.27566316216 1.0938097565681963 0.8197233263650732 0.8389261762741231 0.8142979851795022 0.8653890976864317 0.9546535641055621 1.019088645900825 0.9487276881838119 1.12261442800312 1.0 16.208601610087115 2.5208078642017457 2.9824105922866506 1.0108681997040967 0.8762956446748718 0.3550773597334209 0.08521829733486928 0.2975945503813237 5.3095705891168254 0.030388100947820264 0.026820995098613257 331.7476569246336 -2.5208078642017457 -0.13457255502922494 ATNVTYQAHHVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATNVTYQAHHVSR 13 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ; 74.85300000000002 0.019071 286860000.0 170263.0 310280.0 337800.0 356280.0 331430.0 309120.0 318330.0 208846.0 266250.0 304670.0 False True 169346.3229259976 320607.4822317789 385359.3037897645 401385.0114697891 373635.64596048405 287751.2619902099 302931.16176130826 224431.14901849983 200636.255067215 285225.6997588896 0.5937274343411252 1.124048367670931 1.3510679581661857 1.407254016061991 1.3099648673886335 1.008854609642312 1.0620752688743884 0.7868545829082675 0.7034297934471516 1.0 18.121744453568812 2.0080567882846454 1.9281937310844477 0.8087723474459915 1.1696583064334993 0.2530130832842292 0.2271743344835722 0.43762383260743837 3.0406244150702113 0.13928750975594326 0.07201082096025631 101.8724587627443 -2.0080567882846454 0.36088595898750786 ATPS(ph)ENLVPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATPSENLVPSSAR 13 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 AT(0.391)PS(0.609)ENLVPSSAR;AT(0.299)PS(0.701)ENLVPSSAR 139.86 4.0988e-05 1737890000.0 301900.0 295662.0 232720.0 212513.0 258707.0 268708.0 241231.0 286237.0 338420.0 250852.0 True False 300274.603944243 305502.93093854707 265484.95316149783 239417.12401055134 291651.80297347496 250132.84843059434 229561.73493809 307597.4584220348 255020.92559566934 234842.4105947976 1.2786217071427681 1.300884836622073 1.1304812980291348 1.019479928706945 1.2419043146201456 1.065109354809763 0.9775139607733843 1.3098037004600944 1.085923641090911 1.0 17.84133344519168 4.221018871601858 7.403881380443939 1.1182965138439003 1.2902292475156862 0.349809946460786 0.09988853587059153 0.16124670029484625 42.14678162514196 0.024899625521639823 0.05749903059523307 16634.849329908593 -4.221018871601858 0.17193273367178596 ATQCQLEADVLWSDVVSHPPEGPWQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATQCQLEADVLWSDVVSHPPEGPWQR 26 0 A0A087WYJ2;M0R2B7;P28340;M0QZR8;A0A2R8Y7K6 A0A087WYJ2 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit 0 81.315 0.017047 26467000.0 11084.0 11205.0 12113.0 15564.0 12410.0 16017.0 13655.0 13813.0 11999.0 13256.0 False True 11024.324975548165 11577.951651434461 13818.405111916578 17534.400804187128 13990.339940167158 14909.782489962432 12994.455482834368 14843.79620099277 9042.0072283625 12409.990730967424 0.8883427243856419 0.9329540933937426 1.1134903652614865 1.4129261805516458 1.1273449145498706 1.20143381354485 1.0470963084934861 1.1961166227104523 0.7286070895926953 1.0 13.599214417467975 -0.8985953911631809 5.205493295643808 0.9999998322081682 1.0915006034526378 0.003823982798741299 0.18115908796552624 3.5313312843559056e-07 7.48219328649385e-08 0.17425234780566656 0.041071596367258115 0.1263003659295451 0.8985953911631809 0.09150077124446954 ATQPETTEEVTDLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATQPETTEEVTDLKR 15 1 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-2 A0MZ66 KIAA1598 Shootin-1 0 ; 169.02 1.9578e-06 485480000.0 344840.0 370580.0 332640.0 334230.0 317810.0 344060.0 353510.0 325870.0 450880.0 355390.0 False True 342983.41975532536 382914.53127965983 379472.82064128923 376543.4837306256 358281.2196925487 320275.942030123 336409.3707606575 350188.0741343314 339766.66548246355 332708.70593531296 1.0308820107100236 1.1509002453158175 1.1405557289957673 1.1317512196504869 1.076861570800638 0.9626316844633239 1.0111228373629153 1.0525365519062098 1.0212136304858908 1.0 18.34390009192111 2.97301043379384 5.635902329548927 1.0160777912597578 1.1169399652768441 0.6355265988125414 0.037223271647292326 0.12118571029255099 11.80212166143686 0.011517456391133937 0.01272934346706431 939.745887404727 -2.97301043379384 0.1008621740170863 ATQQQHDFTLTQTADGR ddPTM_BT-474_Trastuzumab_2h_R1 6 ATQQQHDFTLTQTADGR 17 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;;;; 268.55 5.4176e-28 6401350000.0 3209260.0 3420120.0 2971400.0 3244490.0 3234590.0 3762040.0 3381080.0 2563740.0 4420540.0 3686470.0 False True 3191981.700742309 3533956.6266938043 3389747.2921282025 3655242.101334945 3646495.863583023 3501979.029689593 3217524.243420112 2755059.2972079325 3331157.149201233 3451196.3284542426 0.9248913701099023 1.0239801768323709 0.9821948592667974 1.0591232006126097 1.0565889380208786 1.0147145211116098 0.9322924392601014 0.798291095320531 0.9652180960372156 1.0 21.71866511612883 2.132306353783566 4.395545878687806 0.8916973111405297 1.013836918062404 0.2775941040548595 0.062479746042154144 0.19618553690840157 6.662486650621737 0.024166143704000897 0.017451648689919563 135.61457078748853 -2.132306353783566 0.12213960692187431 ATQRPPYCDGTHR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATQRPPYCDGTHR 13 1 P0C7P0 P0C7P0 CISD3 CDGSH iron-sulfur domain-containing protein 3, mitochondrial 0 ;; 139.3 2.3511e-05 901130000.0 252528.0 303233.0 318039.0 284940.0 351020.0 550371.0 307642.0 228547.0 328327.0 325820.0 False True 251168.41730649816 313325.927096781 362816.1267554562 321013.37478444364 395720.31634145626 512325.1482039783 292760.1811534334 245602.3376781507 247415.2102063985 305025.88865146425 0.8234331138806845 1.027210931118049 1.189460108974637 1.0524135384168896 1.2973335413953122 1.6796120174225053 0.9597879788097391 0.8051852213724277 0.8111285612517494 1.0 18.21857216906003 2.0137939174775368 24.99636224015356 0.8584653990904497 1.1839253252432667 0.3039199972751999 0.21342875551132467 277.6918542855474 503211.4886711968 0.0847934400968564 0.06259485599832847 103.22714534475381 -2.0137939174775368 0.32545992615281694 ATS(ph)FEESER ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSFEESER 9 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 AT(0.001)S(0.999)FEESER;AT(0.028)S(0.972)FEESER 157.78 7.1048e-05 1818910000.0 1539670.0 1771550.0 1520210.0 1727680.0 1657990.0 1681130.0 1539840.0 1496350.0 1493340.0 1614470.0 True False 1531380.5877934166 1830514.9708254095 1734242.3540978052 1946404.1108569768 1869125.1988233493 1564917.4400543515 1465352.0564399594 1608015.2353113396 1125326.3667308001 1511433.1423826918 1.0131977027970147 1.211112102477588 1.1474158568230592 1.2877871050178091 1.2366575446908459 1.0353864793432705 0.9695116610516505 1.0639010024461892 0.7445426034239163 1.0 20.527485732685275 2.550610859441594 3.6839062536918608 0.9648310279872347 1.1845949793057025 0.5365020409019425 0.10245746510630414 0.19817406728054857 5.182095254404319 0.035136571185859514 0.03199284877583342 355.3128052256815 -2.550610859441594 0.2197639513184677 ATS(ph)LPSIPNPFPELCS(ph)PPSQS(ph)PILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 3 AT(0.465)S(0.516)LPS(0.019)IPNPFPELCS(0.806)PPS(0.393)QS(0.794)PILGGPS(0.004)S(0.003)AR;AT(0.473)S(0.524)LPS(0.004)IPNPFPELCS(0.972)PPS(0.241)QS(0.779)PILGGPS(0.005)S(0.004)AR 111.23 4.5459e-05 133273000.0 147612.0 139516.0 128280.0 142865.0 113695.0 144254.0 126203.0 132621.0 173375.0 148334.0 True False 146817.27339323497 144159.70572079695 146340.70897025176 160951.69435172153 128173.38432693854 134282.06051739023 120098.0787477221 142517.8524557925 130649.05435597536 138867.19712487335 1.0572494903977407 1.038112014251749 1.0538176905713594 1.159033217952755 0.9229925207727883 0.9669818596298158 0.8648412384944048 1.026288824189606 0.9408201293102503 1.0 17.083346324049298 3.2210348452543043 24.99997298345428 0.9543517822280569 1.0726119448216844 0.5852104415411494 0.0508379817165131 173.45581085134955 247428.86927947088 0.014552365441827564 0.017429544001911098 1663.5461182463696 -3.2210348452543043 0.11826016259362748 ATS(ph)LPSIPNPFPELCS(ph)PPSQSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 AT(0.143)S(0.847)LPS(0.009)IPNPFPELCS(0.788)PPS(0.18)QS(0.032)PILGGPSSAR;AT(0.216)S(0.725)LPS(0.059)IPNPFPELCS(0.446)PPS(0.319)QS(0.235)PILGGPSSAR;AT(0.399)S(0.444)LPS(0.157)IPNPFPELCS(0.538)PPS(0.255)QS(0.207)PILGGPSSAR 166.16 7.0154e-13 1706280000.0 468752.0 459244.0 434113.0 476367.0 407202.0 489547.0 465451.0 444109.0 543902.0 509262.0 True False 466228.2913152427 474529.6589211395 495232.3370221613 536675.0133569912 459056.76102465304 455705.76815968275 442935.3569345106 477250.6687198069 409864.6400134024 476760.46315886604 0.9779088815925707 0.9953209118412506 1.0387445589361717 1.1256701317075457 0.9628666730942541 0.9558380012057177 0.9290521995044622 1.0010282009495772 0.85968672254777 1.0 18.862905075233396 3.033472651911893 24.995413888899495 0.952583385579485 1.0334710366059865 0.3823440265753638 0.0518270228433568 203.43826852520775 151914.5125209403 0.01495395647188906 0.017873307386353978 1080.1216020788593 -3.033472651911893 0.08088765102650153 ATS(ph)LPSIPNPFPELCSPPSQS(ph)PILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 AT(0.459)S(0.536)LPS(0.005)IPNPFPELCS(0.003)PPS(0.217)QS(0.78)PILGGPSSAR;AT(0.464)S(0.529)LPS(0.006)IPNPFPELCS(0.022)PPS(0.222)QS(0.756)PILGGPSSAR 171.16 3.6997e-13 250580000.0 145095.0 143696.0 138779.0 141210.0 132094.0 161801.0 146810.0 143274.0 165809.0 170207.0 True False 144313.82464157 148478.83449393354 158317.87691130774 159087.17152141247 148915.38791752135 150616.07770858525 139708.23943133757 153965.83341063064 124947.59367676954 159344.24353845586 0.9056732859429689 0.9318117253360327 0.9935588095035236 0.9983866877689789 0.9345514127818642 0.9452244672537281 0.8767699185670339 0.9662465991341118 0.7841362254584044 1.0 17.281787375770772 2.411189328809341 8.41981430524771 0.9096529996822404 0.9548028652127158 0.12071552452041656 0.059123807623335474 0.6016626423540241 69.12731404502165 0.01978297504568358 0.01653739698661848 257.74445379662484 -2.411189328809341 0.0451498655304754 ATS(ph)PLVSLYPALECR ddPTM_BT-474_Trastuzumab_2h_R1 7 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 AT(0.158)S(0.842)PLVSLYPALECR;AT(0.001)S(0.999)PLVSLYPALECR;AT(0.076)S(0.924)PLVSLYPALECR;AT(0.04)S(0.96)PLVSLYPALECR;ATS(1)PLVSLYPALECR;ATS(1)PLVSLYPALECR;AT(0.023)S(0.977)PLVSLYPALECR 260.96 6.621899999999999e-25 2283164000.0 1279345.0 1622015.0 1445593.0 1605058.0 1526991.0 1430341.0 1424422.0 1491578.0 1889751.0 1632268.0 True False 1272457.1486685905 1676002.788746225 1649119.9290803967 1808258.1782296964 1721444.252665253 1331464.8933305473 1355517.2660395368 1602887.124439617 1424047.187416057 1528095.2587850566 0.8327080012539817 1.096792087476775 1.0791996896787464 1.1833412660853284 1.1265294115459283 0.8713232278393139 0.8870633281836555 1.0489445047516377 0.931909957333599 1.0 20.54330305058603 2.747279107693153 24.86582302672089 0.9539266271642184 1.0730580224288142 0.2548394923480596 0.09814308997813398 854.3970561392714 2436808.0265433704 0.031076578709236163 0.03250031152577736 558.8292216931264 -2.747279107693153 0.11913139526459582 ATS(ph)PSSSVSGDFDDGHHSVSTPGPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;Q86U86-6;C9JQF1;C9JPI5;C9JCJ2;C9J053;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 AT(0.124)S(0.874)PS(0.002)S(0.001)SVSGDFDDGHHSVSTPGPSR;AT(0.178)S(0.79)PS(0.032)SSVSGDFDDGHHSVSTPGPSR 264.29 3.4759000000000006e-53 2400660000.0 103811.0 208690.0 241590.0 310590.0 225240.0 225100.0 224680.0 138332.0 182744.0 216710.0 True False 103252.0931104863 215636.1204942312 275603.7720620762 349910.66215449007 253922.97889792503 209539.36682840387 213811.37003904977 148655.03627566315 137709.18984414326 202879.38226523445 0.5089333965710702 1.062878435879301 1.3584612146628359 1.724722631977626 1.2515957810141531 1.0328273109312927 1.0538841732055522 0.7327261874315002 0.6787737043881032 1.0 17.630262732261393 2.0595854735098214 1.933512865438616 0.7803343754330153 1.2021230223671697 0.21066994915472337 0.2979044640779458 0.4998275357493872 3.546265352267061 0.1799774528939733 0.09765054393652661 114.70582517771903 -2.0595854735098214 0.4217886469341544 ATS(ph)PTQSTSSWQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSPTQSTSSWQK 13 0 P98088 P98088 MUC5AC Mucin-5AC 1 ATS(0.995)PT(0.005)QSTSSWQK;AT(0.129)S(0.75)PT(0.121)QSTSSWQK 170.74 2.7564e-05 333890000.0 1092810.0 1025100.0 938050.0 867840.0 813260.0 1320030.0 1310560.0 1000640.0 1252250.0 1272340.0 True False 1086926.4323826046 1059219.833813964 1070119.2863232365 977708.455018361 916823.8404303269 1228779.4331163832 1247163.2059746163 1075312.8379469626 943649.7667903103 1191138.1718949212 0.9125107884448607 0.8892501800432647 0.898400631910602 0.8208186741786423 0.7697040209632425 1.0316010871867034 1.047034874208227 0.9027607907454616 0.7922252758377357 1.0 20.183909344697017 2.7342604710703355 24.996984471231762 0.9526844613583377 0.8600290217594019 0.27828925081082 0.07770764205027776 564.3892898443471 3280815.339242736 0.026456057145822852 0.02576747383268123 542.3260566238396 -2.7342604710703355 -0.09265543959893585 ATSACAPISS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSACAPISSPK 12 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211 A0A087X1U1 AGAP1 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 1 ATSACAPIS(0.038)S(0.962)PK 138.55 7.6014e-05 87369000.0 317800.0 268710.0 246830.0 247830.0 250050.0 324000.0 288910.0 267170.0 387580.0 285490.0 True False 316089.00011089916 277653.8499113748 281581.5185151795 279205.25258941774 281892.3853375344 301602.6426139622 274934.3195566225 287107.5820617708 292066.1023059199 267269.7837797141 1.1826589434869386 1.0388523759955572 1.0535478965600589 1.0446570077653858 1.0547110165280502 1.1284576892633158 1.0286771503628915 1.0742238722294444 1.092776363177078 1.0 18.027937217160854 -0.8670259007423031 0.007947778027986819 3.922638086304423e-06 2.0724474400788178 0.20898602764889196 0.044797507976142535 14749.042496029419 23.71805292622304 3230.8616814721654 2956.7635311835934 0.13582324410046517 0.8670259007423031 2.0724435174407314 ATSAGS(ph)SPSCSLAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSAGSSPSCSLAGR 15 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 ATSAGS(0.494)S(0.494)PS(0.011)CSLAGR 140.19 5.226e-06 177500000.0 290340.0 342050.0 311460.0 360950.0 352240.0 363380.0 359410.0 340700.0 396980.0 386180.0 True False 288776.84169980633 353434.9274764088 355310.86074114905 406646.2329909629 397095.6761099501 338260.3959045108 342023.96522046835 366124.76403954544 299149.5982594672 361533.6617746684 0.7987550599915952 0.9775989481629314 0.9827877686327372 1.1247811088872042 1.0983643242532872 0.9356262823331151 0.9460362931118714 1.0126989620892854 0.8274460441415743 1.0 18.463770454709945 4.749456129016285 3.4927093157742926 0.9959005132558508 0.772261138378121 0.34498278878677724 0.07879232679912296 0.36199303838573277 7.556381528755663 0.019676930841221813 0.21695836381902076 56163.75407341024 -4.749456129016285 -0.22363937487772978 ATSAGSS(ph)PSCSLAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSAGSSPSCSLAGR 15 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 ATSAGS(0.006)S(0.968)PS(0.026)CSLAGR;ATSAGS(0.018)S(0.9)PS(0.075)CS(0.006)LAGR 183.58 1.3713e-11 126190000.0 783280.0 896820.0 883130.0 902990.0 927940.0 1054990.0 1008020.0 965570.0 1246310.0 1047860.0 True False 779062.9075105892 926670.1115608627 1007467.0276964332 1017308.4414143498 1046107.6586687112 982061.024479333 959258.2215896508 1037625.736465111 939173.6001983897 980984.6776819187 0.7941641956646319 0.9446326050174381 1.0269956816013608 1.0370278604333196 1.066385319229123 1.00109721061083 0.9778524001581678 1.057738984177649 0.957378460199471 1.0 19.903871077135204 4.669946680592584 2.257136055031498 1.0197029849930335 0.7557908227425721 0.8102724260712585 0.03251211356173038 0.19762266581697444 1.3171976115754387 0.008056640836543281 0.09766638794067695 46767.77198123023 -4.669946680592584 -0.2639121622504613 ATSEEDVSIKS(ph)PICEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSEEDVSIKSPICEK 16 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 ATSEEDVSIKS(1)PICEK 163.42 4.6848e-09 335120000.0 457890.0 335330.0 312950.0 307850.0 287130.0 431780.0 365910.0 391250.0 670510.0 480790.0 True False 455424.77111636207 346491.25633873406 357010.63978983724 346823.7784354285 323694.3035471551 401932.064900792 348209.53538805724 420447.0617272444 505271.7948736844 450105.57057497156 1.0118176732063007 0.7697999735842438 0.7931708984045377 0.7705387382617608 0.7191519605804105 0.8929728738690302 0.7736174758807122 0.9341076609875303 1.122562856150042 1.0 18.779903894283926 1.4990902939016322 3.686033706493747 1.058251177697952 0.8137322829907547 0.5771512275219279 0.08290549712541981 0.13292926273205136 3.7688075447003695 0.05410050686445602 0.020745058482608283 31.5566064666161 -1.4990902939016322 -0.24451889470719723 ATSHVGEIEQELALAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSHVGEIEQELALAR 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 0 ; 163.51 7.705e-09 227140000.0 87474.0 99222.0 94667.0 98851.0 104303.0 97468.0 109402.0 86300.0 109969.0 98580.0 False True 87003.04970327501 102524.5442890343 107995.29073968514 111365.52646457868 117585.36879768381 90730.26657499273 104109.80730377471 92740.14422252063 82868.61345910456 92288.54000141587 0.9427286389181174 1.1109130590587022 1.1701917782861047 1.2067102422778617 1.274105851017687 0.9831152012330108 1.1280903057105192 1.0048933943596663 0.8979296178900783 1.0 16.493863890805116 1.6246904996866387 2.528936080967585 0.9456704341484816 1.1249736068690697 0.3448312737164163 0.0950496539401391 0.27236185913371175 3.9606400986659347 0.06784208467631365 0.026723722689004758 42.13960881330737 -1.6246904996866387 0.17930317272058804 ATSILSYLS(ph)DSDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSILSYLSDSDLR 14 0 A0A499FJE4;Q96MK2;Q96MK2-2 A0A499FJE4 FAM65C Protein FAM65C 1 ATSILSYLS(1)DSDLR;ATSILS(0.004)YLS(0.996)DSDLR 185.67 1.2079e-06 16374000.0 44930.0 65617.0 58944.0 66844.0 61503.0 51275.0 52562.0 49319.0 47688.0 47971.0 True False 44688.10187219226 67801.0221786858 67242.80284956754 75306.44354633035 69335.04249315878 47730.47993836699 50019.37525366093 52999.43421680756 35935.93138646143 44909.449709960616 0.9950712413712951 1.5097272982983798 1.4972974125455278 1.6768507303626097 1.54388537247609 1.0628159607081689 1.113782858100062 1.1801399161890118 0.8001864110682051 1.0 15.454731423965425 2.7311040630686545 24.02262266875382 1.0606554906134082 1.4640206487268854 0.5364838043345961 0.19063367197775088 278.38879461668125 896876.6346173085 0.06202068604738968 0.05960630785564614 538.3987749835541 -2.7311040630686545 0.4033651581134772 ATSLGRPEEEEDELAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSLGRPEEEEDELAHR 17 1 P36551;D6RER6;P36551-2 P36551 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial 0 ; 149.73 1.8853e-07 935250000.0 482450.0 675700.0 665090.0 655480.0 751210.0 803310.0 672790.0 574600.0 745190.0 670440.0 False True 479852.5428052341 698190.2660307239 758728.8909340871 738463.7007921208 846872.1407294902 747779.0704883395 640244.5773926135 617479.5697596789 561547.909534416 627651.9452074374 0.7645201237234182 1.1123844534568819 1.208836994336613 1.176549688773864 1.3492703196348752 1.1913913056402627 1.0200630815873826 0.9837929675428688 0.8946804257076362 1.0 19.25960523080907 2.0715661937183523 3.949082011604596 0.9655851132791513 1.1475338294814934 0.23433887246166962 0.1421828537685046 0.3291263144743569 10.157064253465425 0.061313377268231446 0.04216403194295119 117.91422304794459 -2.0715661937183523 0.1819487162023421 ATSLPSIPNPFPELCS(ph)PPS(ph)QSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 ATSLPSIPNPFPELCS(0.984)PPS(0.622)QS(0.394)PILGGPSSAR;ATSLPSIPNPFPELCS(0.994)PPS(0.626)QS(0.38)PILGGPSSAR 142.04 1.2212e-08 297960000.0 109711.0 178365.0 171529.0 153624.0 167964.0 179225.0 172395.0 123156.0 176750.0 166446.0 True False 109120.32816603813 184301.77120108082 195678.79224320475 173072.78264857622 189353.21979937467 166835.59760026948 164055.59523714613 132346.52609349656 133192.3308286584 155823.27377841008 0.700282605544623 1.1827615139389822 1.2557738487863603 1.1106991815272471 1.2151793195453342 1.0706718807456168 1.05283114171021 0.8493373479092806 0.8547653222718563 1.0 17.249551204993267 1.8856985275800724 3.6769956454152797 0.8886177864777844 1.1055686017062376 0.23630693053499086 0.1488813340303744 0.30371018327054206 6.84448394391154 0.07321380055921929 0.040447894926402085 76.85967214284013 -1.8856985275800724 0.21695081522845316 ATSLPSIPNPFPELCS(ph)PPSQS(ph)PILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 ATSLPSIPNPFPELCS(0.978)PPS(0.055)QS(0.966)PILGGPSSAR 147.16 8.3015e-09 173460000.0 41482.0 65737.0 58645.0 57925.0 62707.0 67218.0 67407.0 52700.0 55911.0 54966.0 True False 41258.66552108345 67925.01630614442 66901.70624852204 65258.299060815945 70692.36475649179 62571.377874152175 64146.265890253766 56632.741605177675 42132.48321901622 51458.022821239814 0.8017926702005644 1.3200082821314247 1.3001219747780066 1.2681851241645439 1.373787038069267 1.2159693366284026 1.2465746325522782 1.1005619435071248 0.8187738453414812 1.0 15.65110840481409 1.4723489587070786 3.529876060696495 0.9126587861311188 1.2316275750559211 0.38194897989503684 0.15421120185562642 0.20695235192457953 5.06340673895219 0.10631137770586156 0.038825242025958634 29.672146099855787 -1.4723489587070786 0.3189687889248023 ATSLPSIPNPFPELCS(ph)PPSQSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 ATSLPSIPNPFPELCS(0.837)PPS(0.139)QS(0.024)PILGGPSSAR 110.7 6.5244e-05 128530000.0 50524.0 72960.0 66945.0 64427.0 62172.0 68216.0 64215.0 56441.0 66015.0 61454.0 True False 50251.98439774413 75388.42949474868 76370.27410362875 72583.45159415076 70089.23567768515 63500.388483191375 61108.67512487798 60652.914021590754 49746.48780567968 57531.95310658358 0.8734621664007721 1.3103749381684335 1.3274410128601983 1.2616198073387634 1.2182662310775019 1.1037412264720212 1.0621693133147794 1.0542474354942424 0.8646758039574883 1.0 15.8120758275111 2.072350362059652 1.1613761356645522 0.9557129364626343 1.2136036786427076 0.37458448272765443 0.12647200216732127 0.500773646985749 1.2582111897258488 0.09194515992945326 0.04517487464636071 118.12732298941125 -2.072350362059652 0.25789074218007324 ATSLPSIPNPFPELCSPPSQS(ph)PILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATSLPSIPNPFPELCSPPSQSPILGGPSSAR 31 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 ATSLPSIPNPFPELCS(0.003)PPS(0.168)QS(0.828)PILGGPSSAR;ATSLPSIPNPFPELCS(0.002)PPS(0.052)QS(0.946)PILGGPSSAR;ATSLPSIPNPFPELCS(0.001)PPS(0.079)QS(0.92)PILGGPSSAR 184.01 1.6472e-18 647474000.0 279978.0 406728.0 381540.0 391396.0 390697.0 438635.0 426734.0 361023.0 394347.0 367511.0 True False 278470.62955648033 420265.6956077315 435257.5155948694 440946.6934692641 440449.947107453 408313.19488572574 406091.2461378136 387964.3694976485 297165.4658290748 344056.1333380028 0.8093755715231187 1.2215032806721107 1.26507704243502 1.281612651956637 1.2801688574310413 1.1867633078483633 1.1803052083331622 1.1276193966770824 0.8637121592514605 1.0 18.392284436694784 1.3820795247044706 4.21703985039016 0.9346000344577426 1.186367850995656 0.33608741942969866 0.13334507636700185 0.23398151537107645 6.526233026083608 0.09775459650356352 0.03371426838982426 24.103467526558106 -1.3820795247044706 0.25176781653791325 ATSS(ph)PMLYEVVYEAGALER ddPTM_BT-474_Trastuzumab_2h_R1 5 ATSSPMLYEVVYEAGALER 19 0 Q5T4L2;Q5T4K9;Q5T4L1;Q8TEY5-2;Q8TEY5 Q5T4L2 CREB3L4 Cyclic AMP-responsive element-binding protein 3-like protein 4;Processed cyclic AMP-responsive element-binding protein 3-like protein 4 1 AT(0.02)S(0.121)S(0.859)PMLYEVVYEAGALER;AT(0.033)S(0.414)S(0.553)PMLYEVVYEAGALER;AT(0.024)S(0.192)S(0.784)PMLYEVVYEAGALER;ATS(0.021)S(0.979)PMLYEVVYEAGALER;AT(0.107)S(0.406)S(0.487)PMLYEVVYEAGALER 186.94 2.04e-14 803548000.0 230605.0 305115.0 287991.0 286099.0 305728.0 289010.0 264092.0 267114.0 257354.0 275078.0 True False 229363.44830262425 315270.56832908775 328537.6295373543 322319.10406560893 344660.6486081726 269031.41895636136 251316.86103058877 287047.40305740887 193932.55506692268 257522.2865338755 0.8906547522148258 1.224245763628756 1.2757638725537532 1.2516163490308625 1.3383721201265217 1.0446917918343812 0.9759033457383097 1.1146507237137688 0.7530709581572934 1.0 17.974337766074726 2.544959024788152 6.57490708661878 0.9887437435140408 1.2049390365176198 0.3825849890334204 0.13996207982120318 0.2721528142708679 21.70735850024995 0.045809447539505804 0.04284476132295557 350.71878245598225 -2.544959024788152 0.21619529300357898 ATSS(ph)SSGSLSATGR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 ATSS(0.988)S(0.011)S(0.001)GSLSATGR;ATS(0.001)S(0.496)S(0.496)S(0.007)GSLSATGR;ATSS(0.5)S(0.5)S(0.001)GSLSATGR 340.43 7.025699999999998e-69 804870000.0 973070.0 820640.0 751400.0 861780.0 780730.0 873490.0 726900.0 686390.0 975550.0 889730.0 True False 967831.0992382402 847954.5063126446 857190.5887141189 970881.2596397059 880151.3377507416 813107.692274288 691737.0699723396 737611.9072177969 735138.7742002693 832946.6696638241 1.1619364534212677 1.0180177641563506 1.0291062080361995 1.1655983450075524 1.0566718972608045 0.9761821757477666 0.8304698189759537 0.88554517843921 0.8825760411491531 1.0 19.667864602831305 2.584541302866113 2.8548560962719716 0.8880770933414104 1.084807706207444 0.6734809431708567 0.061070193714429524 0.1483012727262749 2.3450244386009964 0.021043858151823764 0.01920384226888389 384.1857948028147 -2.584541302866113 0.19673061286603355 ATSSHFS(ph)ASEESMDFLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSSHFSASEESMDFLDK 18 0 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 ATSS(0.002)HFS(0.953)AS(0.044)EESMDFLDK 211.17 2.1344e-16 85842000.0 72602.0 78407.0 81125.0 70652.0 71655.0 99201.0 92747.0 80543.0 107790.0 101180.0 True False 72211.11889884043 81016.72959696762 92546.69484885922 79596.53595588722 80779.8395175405 92343.4683640358 88260.47328205343 86553.52764906698 81226.59881200056 94722.60577544388 0.7623430363606046 0.8553051189177757 0.9770285993636721 0.8403119329781151 0.8528042367103257 0.9748831085047615 0.9317783496295484 0.9137578821918909 0.8575207380227915 1.0 16.531421148941156 4.589707678962887 3.4580537145773254 0.9134062653947537 0.7624978790758506 0.4485717990736602 0.053116307752168544 0.2318528806625479 4.582350874601227 0.01256836467884804 0.07079170831644976 38878.33691269436 -4.589707678962887 -0.15090838631890302 ATSSS(ph)NPS(ph)SPAPDWYKDFVTDADAEVLEHSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATSSSNPSSPAPDWYKDFVTDADAEVLEHSGK 32 1 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 2 AT(0.005)S(0.03)S(0.03)S(0.935)NPS(0.538)S(0.462)PAPDWYKDFVTDADAEVLEHSGK 157.19 4.2285e-11 67702000.0 95736.0 88508.0 78300.0 86031.0 80089.0 103130.0 112320.0 98546.0 144650.0 121600.0 True False 95220.56801326951 91453.93527578421 89323.95940419954 96922.51577904279 90287.85942530604 96000.86584190711 106886.65249593227 105900.00292644846 109002.94571069561 113839.38389300219 0.8364466211690628 0.803359366049819 0.7846490059025203 0.8513970513942732 0.7931161987855428 0.8433009961836975 0.938925078832078 0.9302580469513436 0.9575152463329181 1.0 16.79664023346483 2.2693393576557304 2.5461319341466786 0.9530920030388602 0.813085224764081 0.8827634679672829 0.024835175943501597 0.08975827679715537 1.194652096488893 0.010201092405539335 0.0073879579903709325 185.92567105908714 -2.2693393576557304 -0.14000677827477925 ATSSS(ph)NPSS(ph)PAPDWYK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSSSNPSSPAPDWYK 16 0 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 2 ATSS(0.09)S(0.91)NPS(0.197)S(0.803)PAPDWYK;ATSS(0.002)S(0.997)NPS(0.002)S(0.998)PAPDWYK 222.96 1.3397e-14 658990000.0 2636770.0 2223120.0 1991670.0 1882930.0 1918520.0 2626110.0 2344180.0 2250320.0 2738850.0 2553430.0 True False 2622573.923292689 2297115.2052955804 2272079.824094024 2121308.744938835 2162832.150041056 2444573.1968979966 2230783.057762775 2418250.305293422 2063897.116209736 2390467.9112985944 1.0970964767596507 0.9609479359410011 0.9504749314370602 0.8874031460169061 0.9047735549255383 1.0226337636007046 0.9331993319044085 1.0116221572619795 0.8633862460377255 1.0 21.188861608968743 4.74152829710356 3.997823193073114 0.9490624422074608 1.1108512778595112 0.4425453358185235 0.05027878830547687 0.2233519994060395 7.465111628873387 0.011855849891161032 0.1053568220035385 55147.81335900079 -4.74152829710356 0.16178883565205038 ATSSSNPS(ph)SPAPDWYKDFVTDADAEVLEHSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSSSNPSSPAPDWYKDFVTDADAEVLEHSGK 32 1 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 ATSS(0.001)S(0.005)NPS(0.497)S(0.497)PAPDWYKDFVTDADAEVLEHSGK;AT(0.005)S(0.005)S(0.005)S(0.004)NPS(0.491)S(0.491)PAPDWYKDFVTDADAEVLEHSGK 189.05 4.4845e-20 600520000.0 159253.0 161158.0 169736.0 138982.0 156922.0 221680.0 207234.0 210760.0 297070.0 194413.0 True False 158395.59954267167 166522.04660793176 193633.35342824023 156577.1069498545 176905.08655043607 206355.7833785898 197209.29970924175 226487.98141759454 223861.07903405695 182005.3958946567 0.8702796901381418 0.9149291744312537 1.063887982421761 0.8602882688185799 0.9719771530995012 1.1337893712669207 1.083535456406935 1.2444025645738765 1.2299694629033195 1.0 17.473621696921587 2.715885204336937 2.4274277810860263 1.1642401807691904 0.9327428668750681 0.587061053755717 0.08428391545473558 0.19609323151511035 2.2836575621114075 0.029397501321858942 0.02882830249763896 519.8585658289426 -2.715885204336937 -0.23149731389412231 ATSSSNPSS(ph)PAPDWYK ddPTM_BT-474_Trastuzumab_2h_R1 3 ATSSSNPSSPAPDWYK 16 0 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 ATSSSNPS(0.145)S(0.855)PAPDWYK;ATSSSNPSS(1)PAPDWYK;ATSSSNPS(0.016)S(0.984)PAPDWYK 385.12 2.974599999999999e-121 953300000.0 2164550.0 2088410.0 1923650.0 1655920.0 1930950.0 2509320.0 2448700.0 2258380.0 2655810.0 2418460.0 True False 2152896.3033041116 2157921.464379493 2194483.199334461 1865559.3022146965 2176845.0368626765 2335856.6147039076 2330247.026057598 2426911.7834212724 2001321.211530744 2264111.8122522235 0.9508789679262879 0.9530984524270921 0.9692468311233712 0.823969599080415 0.9614565080587878 1.0316878354078796 1.0292102242687329 1.071904563320618 0.8839321453563423 1.0 21.110513776168258 2.993881547390945 24.97805814063484 1.0133462771626598 0.9249595626917175 0.27973783572678246 0.0587939101083749 324.7802073236288 1325894.8410257485 0.01736578744228617 0.02012433903268616 986.0105173332573 -2.993881547390945 -0.08838671447094226 ATSTS(ph)PNSQSSK ddPTM_BT-474_Trastuzumab_2h_R1 8 ATSTSPNSQSSK 12 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 ATST(0.002)S(0.998)PNSQSSK;ATS(0.001)T(0.021)S(0.916)PNS(0.063)QSSK;ATS(0.001)T(0.03)S(0.968)PNS(0.002)QSSK;ATST(0.024)S(0.974)PNS(0.002)QSSK;ATST(0.03)S(0.97)PNSQSSK;ATSTS(0.999)PNSQSSK;ATSTS(0.837)PNS(0.156)QS(0.005)S(0.001)K;ATST(0.001)S(0.999)PNSQSSK 296.1 2.9410999999999996e-36 5977214000.0 12007120.0 10474690.0 9202280.0 8762110.0 8946970.0 7140720.0 10748140.0 10893970.0 13702000.0 12161810.0 True False 11942475.000036431 10823333.724566182 10497881.036348373 9871392.227600623 10086313.596654113 6647098.833846816 10228211.406317936 11706933.359858774 10325325.697393375 11385632.87355062 1.0489074373528575 0.9506132724259284 0.9220287666867831 0.8670042620584006 0.8858808033486756 0.5838146115960186 0.8983436862854212 1.0282198178947566 0.906873233316666 1.0 23.440711150517572 -0.3933407463393066 6.92891684090619 0.99990620132754 0.9000684573089638 0.060199169749239556 0.11957138486855938 0.0 0.0 0.12250026024771263 0.02887358823942483 0.40425858698248424 0.3933407463393066 -0.09983774401857626 ATSVALPGWS(ph)PSETR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATSVALPGWSPSETR 15 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 ATSVALPGWS(0.829)PS(0.171)ETR;ATSVALPGWS(0.975)PS(0.025)ETR 163.84 1.5895e-06 91787000.0 180745.0 216190.0 185330.0 189484.0 188927.0 201633.0 188848.0 180518.0 202271.0 187232.0 True False 179771.88900265755 223385.75346038523 211422.8530827621 213472.6549717679 212985.73359193892 187694.5853030275 179712.7007705824 193989.16981183042 152424.02234253794 175282.69346262002 1.0256111738777842 1.2744313146239017 1.2061821330230138 1.217876395865015 1.2150984754085792 1.0708107092332786 1.0252735008827731 1.106721753184376 0.8695896858467843 1.0 17.41932403306579 2.5879129826722123 3.192315194102113 1.021273658261929 1.1954838831265968 0.532745100825222 0.08200841052820626 0.2129765612536251 4.1167851440390555 0.027837869875733313 0.025587952675339608 387.1800598932624 -2.5879129826722123 0.17421022486466775 ATT(ph)PPNQGRPDS(ph)PVYANLQELK ddPTM_BT-474_Trastuzumab_2h_R1 5 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 AT(0.466)T(0.534)PPNQGRPDS(0.998)PVY(0.002)ANLQELK;AT(0.458)T(0.542)PPNQGRPDS(0.999)PVY(0.001)ANLQELK;AT(0.462)T(0.538)PPNQGRPDS(0.999)PVY(0.001)ANLQELK;AT(0.45)T(0.55)PPNQGRPDS(0.997)PVY(0.003)ANLQELK;AT(0.147)T(0.853)PPNQGRPDS(0.998)PVY(0.002)ANLQELK 173.92 7.3609e-12 5303410000.0 1800970.0 1627480.0 1512910.0 1408730.0 1339680.0 1856360.0 1877790.0 1703680.0 2265360.0 1872940.0 True False 1791273.7776265766 1681649.6879675663 1725914.5775505423 1587075.0735596607 1510280.3070945311 1728034.2026014025 1786954.1238455886 1830817.2527117482 1707092.3822687948 1753407.3656953939 1.0215959010279194 0.9590752958315715 0.9843203646324663 0.9051376791326717 0.8613402319634721 0.9855292252157681 1.0191323241857664 1.0441482615682145 0.9735857255234976 1.0 20.74172978287352 2.4836522550234816 22.686479785647894 1.0146998815775188 0.9444905656538171 0.31595632378228145 0.043589335442071615 102.47873762939956 355982.9285620403 0.015738918698886436 0.013656135067736745 304.5455479122143 -2.4836522550234816 -0.07020931592370172 ATT(ph)PSQLSIEVEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ATTPSQLSIEVEAR 14 0 A0A1W2PQQ1;Q5HYW2;A0A0J9YW69;A0A0J9YY72;Q5HYW2-2 A0A1W2PQQ1 NHSL2 NHS-like protein 2 1 AT(0.026)T(0.974)PSQLSIEVEAR;AT(0.038)T(0.962)PSQLSIEVEAR 169.02 7.4458e-07 86985000.0 232080.0 257350.0 259290.0 255050.0 230100.0 272250.0 257490.0 209519.0 265030.0 242280.0 True False 230830.50706651222 265915.7391786401 295795.77821091784 287339.30384913436 259401.87109044843 253429.99830756517 245034.22499267786 225154.3716959247 199716.90772005296 226817.48297365633 1.01769274590408 1.17237761257374 1.3041136614908693 1.2668304933200734 1.1436590675886154 1.1173300884262072 1.0803145409260067 0.9926676230776937 0.8805181377629917 1.0 17.791172321186515 2.0180407281895447 1.272827667778742 0.9405363289716824 1.1908428352488072 0.6072849269693328 0.07770056120059454 0.30933576495266163 0.9312325198871357 0.05891012159868035 0.027879840505956176 104.2415182632694 -2.0180407281895447 0.2503065062771248 ATTPPNQGRPDS(ph)PVYANLQELK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 ATTPPNQGRPDS(1)PVYANLQELK;ATTPPNQGRPDS(1)PVYANLQELK 236.18 1.0546999999999999e-30 2302700000.0 673130.0 586600.0 542210.0 548960.0 545180.0 710740.0 764690.0 721670.0 853500.0 692460.0 True False 669505.9428717729 606124.6263928113 618548.455026194 618458.2797138632 614605.4414649743 661608.2167019973 727699.0233005212 775524.6799660072 643166.3613140588 648266.6099551681 1.032763268368972 0.934992820985688 0.9541575110107409 0.9540184088096618 0.9480751160505989 1.0205804317883223 1.1225304714534756 1.1963051436809924 0.9921324828970259 1.0 19.306227740872814 2.430625504361887 3.661149103262118 1.1054391355253472 0.9629234243875981 0.3933126689961146 0.062227599624247204 0.17961745627039444 5.048645948641931 0.02245034677441148 0.01887736447024676 269.5414152649412 -2.430625504361887 -0.14251571113774908 ATTVPDFQETRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ATTVPDFQETRPR 13 1 B7ZC38;Q9NR46 B7ZC38 SH3GLB2 Endophilin-B2 0 ;; 151.99 4.1045e-05 1803710000.0 1036510.0 1624190.0 1484520.0 1607500.0 1562530.0 1543360.0 1476420.0 1140450.0 1241650.0 1406500.0 False True 1030929.5453270882 1678250.1823064112 1693527.512320847 1811009.3351793108 1761508.9336590953 1436671.1558786558 1404999.9241278875 1225556.1700877573 935661.994757589 1316735.9658347692 0.7829432567170073 1.2745533089790355 1.286155733770972 1.375377738718626 1.3377844756768333 1.0910852237318904 1.067032389623505 0.9307531668361418 0.71059196303217 1.0 20.32853465222331 1.9728188551871908 1.6241581896596426 0.8570553802539069 1.2214104046592933 0.40252913203655816 0.17064901688260908 0.3605695149822649 1.7714738944930704 0.11265162295970725 0.053781776830469835 93.93314324393928 -1.9728188551871908 0.36435502440538636 ATVAPEDVSEVIFGHVLAAGCGQNPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATVAPEDVSEVIFGHVLAAGCGQNPVR 27 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 276.77 6.427999999999996e-61 357890000.0 90492.0 96502.0 106220.0 89979.0 82907.0 100050.0 97965.0 102290.0 133950.0 122930.0 False True 90004.80112660631 99714.01073330913 121174.85271920919 101370.33217424522 93464.71502171132 93133.77899236696 93226.0586873576 109923.39921809535 100939.81733804113 115084.5021543321 0.7820757742507058 0.8664416916848574 1.0529206839397864 0.88083391140107 0.8121398908809813 0.8092642992665642 0.8100661422016526 0.9551537970828119 0.8770930529175641 1.0 16.81233404056998 0.7870927116243197 1.0867427601230746 0.9974191579422411 0.8693038572760023 0.20508718468581155 0.07670664732521493 1.4072304055152547 3.0878580453697486 0.07698804510522868 0.024389842165336593 6.124811280385143 -0.7870927116243197 -0.12811530066623877 ATVMDVKPVDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATVMDVKPVDYR 12 1 P27694;I3L4R8 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 75.479 0.030736000000000006 363840000.0 718430.0 801320.0 697590.0 683350.0 663440.0 820680.0 805610.0 748770.0 1061600.0 843580.0 False True 714562.0527050772 827991.4517918301 795804.6084390235 769862.0399345463 747925.1514830387 763948.3232729215 766639.5665709408 804647.0195770194 799982.904711194 789742.002174827 0.9048044180723377 1.0484328420062121 1.0076766921950473 0.9748272699368473 0.9470499852146255 0.9673391071630054 0.9707468571504798 1.01887327426064 1.0129674026557598 1.0 19.59102189611312 1.7378554803319657 8.74620718514448 1.0114956353522475 0.9772311830862739 0.17714217658066145 0.035344762291906764 0.19673736802452582 55.794352596735855 0.01694705209700929 0.009095896732571633 54.68339633137981 -1.7378554803319657 -0.03426445226597363 ATVMLYDDGNKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ATVMLYDDGNKR 12 1 P50552;K7ENR7;K7ENL7;K7EIG8 P50552 VASP Vasodilator-stimulated phosphoprotein 0 115.34 0.0015394 714670000.0 400760.0 404110.0 357220.0 368490.0 380020.0 501790.0 504440.0 481410.0 636290.0 516190.0 False True 398602.352688622 417560.5570603459 407513.47098809865 415140.79621786944 428413.2944449894 467102.4383866047 480038.3100520664 517335.2587504476 479484.855349177 483246.3122675069 0.8248430304998806 0.8640739648918421 0.8432831470062302 0.859066661615957 0.886531947724075 0.9665928668857269 0.9933615588282758 1.0705415553467696 0.9922162739314445 1.0 18.882399197470985 2.6494317442226927 1.4740463647296358 1.0286297997225182 0.8464505341217416 0.9175591109840135 0.022919992941665135 0.09693937869423457 0.4256098259396394 0.010017990943004098 0.008881739441610888 446.09950796007536 -2.6494317442226927 -0.18217926560077657 ATVT(ph)PS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 4 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK 217.14 3.0623000000000007e-06 2450660000.0 7317800.0 4309040.0 3399950.0 3061080.0 3052790.0 5665170.0 5110470.0 4779340.0 7161600.0 5839320.0 True False 7278401.777884018 4452463.791530317 3878633.407104831 3448612.414140399 3441544.711196043 5273550.132275738 4863257.042208754 5135998.619796775 5396719.640523449 5466649.598306636 1.3314191164069844 0.8144776268282357 0.7095083263259249 0.630845703958902 0.6295528274323829 0.9646768166573703 0.8896229682830247 0.9395148760563903 0.9872078946115643 1.0 22.382225473856273 ATVT(ph)PS(ph)PVKGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 ATVT(1)PS(1)PVKGK;AT(0.085)VT(0.917)PS(0.999)PVKGK 133.04 0.00038951 3076200000.0 9066100.0 5243800.0 4132400.0 4111200.0 4136400.0 7855900.0 7743500.0 7136500.0 13055400.0 8901700.0 True False 9017289.12493841 5418336.7130559655 4714206.000535294 4631677.498469171 4663146.021636379 7312840.12379945 7368917.321957362 7669061.868412728 9838071.603397252 8333585.884871206 1.082041902431029 0.6501807010704018 0.5656875762321554 0.5557844561100066 0.5595605644506353 0.8775142207480193 0.8842432805948393 0.9202595346542412 1.1805328149623189 1.0 22.990505980297375 2.062938190214603 1.2775300842175865 1.0529109493736322 0.6751676838581854 0.46623456407298014 0.15991704828056155 0.40886356833033155 1.2472860477793137 0.11516084960411646 0.056535090420510255 115.59477133581038 -2.062938190214603 -0.3777432655154468 ATVT(ph)PSPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 ATVT(0.556)PS(0.444)PVK 178.54 0.00056833 7329800000.0 2422000.0 1670800.0 1741100.0 1293000.0 892450.0 1532900.0 1772300.0 1499000.0 2686400.0 1728700.0 True False 2408960.221109498 1726411.5679800708 1986231.746087507 1456693.667425724 1006098.2175344229 1426934.2310584646 1686567.078156526 1610862.9917677671 2024372.7159157447 1618372.8859854701 1.488507526275453 1.066757595193405 1.2273016702686772 0.9000976721991388 0.6216726851066731 0.8817091805079066 1.0421375028966398 0.9953596020529409 1.250869149777587 1.0 20.626112623805337 5.1146252818025495 1.0949200849817753 0.9619861610359561 2.1566120634466515 0.45741681808169266 0.16538204599337616 3.3225958631510033 1.884847184642267 0.051270867039280445 5.57698182801291 130204.28643324562 -5.1146252818025495 1.1946259024106953 ATVT(ph)PSPVKGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 AT(0.009)VT(0.727)PS(0.264)PVKGK;AT(0.002)VT(0.668)PS(0.33)PVKGK 103.44 0.017412999999999998 5750400000.0 1733930.0 1452900.0 1275690.0 1274270.0 1306780.0 1759590.0 1826640.0 1629530.0 2378700.0 1901950.0 True False 1724594.7135377338 1501258.8982034023 1455296.0635037466 1435592.4513461539 1473190.6871081118 1637953.6849293262 1738278.444757564 1751133.8031856779 1792501.2579469865 1780565.9226586823 0.9685654945943398 0.8431358137876591 0.8173222035670247 0.8062562767699016 0.8273721676692498 0.9199062298595425 0.9762505407056336 0.9834703567565433 1.0067031133958144 1.0 20.763904419533525 2.4294529117933705 2.506536256789834 0.9910988648793788 0.8477525946136015 0.6986035194427307 0.042940026896703336 0.16337237732419876 2.0955127372216946 0.017404560263120074 0.014196442220781874 268.8146366061641 -2.4294529117933705 -0.1433462702657773 ATVTPS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 9 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 ATVT(0.049)PS(0.951)PVK;ATVT(0.149)PS(0.851)PVK;ATVT(0.089)PS(0.911)PVK;ATVT(0.082)PS(0.918)PVK;ATVT(0.055)PS(0.945)PVK;ATVT(0.056)PS(0.944)PVK;ATVT(0.082)PS(0.918)PVK;ATVT(0.098)PS(0.902)PVK;ATVT(0.139)PS(0.861)PVK 186.74 4.3367e-05 45060520000.0 43463930.0 32333070.0 33205840.0 21964270.0 15635740.0 29556440.0 34837170.0 25812440.0 56821680.0 31086670.0 True False 43229925.03017659 33409256.689196475 37880933.641664654 24744944.329952683 17626858.808708254 27513272.871175934 33151962.99618697 27738695.34571448 42818738.335503 29102692.10596282 1.4854270138575687 1.1479782202812532 1.301629880278439 0.8502630698169231 0.6056779470616983 0.9453858347880734 1.1391373305081456 0.9531315949987709 1.4712981939815084 1.0 24.794649278110718 3.7543982023162834 23.31115680030336 0.9822031098201598 1.295308471120362 0.3015040028676531 0.2198705020039109 440.03760265483874 647681.5303725068 0.0581396082568609 0.10426194105455518 5680.652226983228 -3.7543982023162834 0.31310536130020217 ATVTPS(ph)PVKGK ddPTM_BT-474_Trastuzumab_2h_R1 10 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 ATVT(0.001)PS(0.999)PVKGK;ATVTPS(1)PVKGK;AT(0.009)VT(0.006)PS(0.985)PVKGK;ATVT(0.01)PS(0.99)PVKGK;ATVT(0.002)PS(0.998)PVKGK;ATVT(0.001)PS(0.999)PVKGK;ATVT(0.003)PS(0.997)PVKGK;ATVT(0.003)PS(0.997)PVKGK;ATVT(0.001)PS(0.999)PVKGK;ATVTPS(1)PVKGK 169.04 1.0512e-05 124839824300.0 56536528.0 42614825.0 39196926.0 35503159.0 32605280.0 55590037.0 58814530.0 49107396.0 82609036.0 56313724.0 True False 56232141.615046725 44033233.68891932 44715512.47501169 39997855.28917908 36757369.1413645 51747228.587061435 55969446.490576796 52772039.2518242 62251145.98216996 52719733.92171526 1.0666241544114605 0.8352324720436806 0.8481740924832963 0.7586884893723631 0.6972222051793046 0.981553295847473 1.0616412930628047 1.0009921394934695 1.1807940092149956 1.0 25.651839753245085 2.521267580717897 6.785325078353585 1.0509580569736952 0.8362918494081808 0.5183265486394921 0.10033102559451901 0.18746298471658607 23.076122651925097 0.03352324538795924 0.031082351768434952 332.0990098212456 -2.521267580717897 -0.21466620756551436 ATVVESSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ATVVESSEK 9 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 145.72 0.0034851999999999995 0.0 96921.0 84772.0 76745.0 77288.0 75927.0 91066.0 86484.0 87099.0 126360.0 101430.0 False True 96399.18810493546 87593.5847742438 87550.02892050178 87072.65287548282 85595.85339541269 84770.82176630569 82300.43851903667 93598.76965976038 95220.27113725184 94956.65056140817 1.0151915377701155 0.9224586614667638 0.9219999694901143 0.9169726644809697 0.9014203101030624 0.892731801986683 0.866715896490191 0.9856999915896396 1.0027762202466608 1.0 16.53498142674842 1.595808530937716 6.742527687067419 0.998720044606664 0.9180474087308405 0.4871325471431268 0.03614302474617607 0.10673616042720765 10.341917059472761 0.019907005307548714 0.009478061322608266 39.4283434511832 -1.595808530937716 -0.08067263587582352 AVAAPRPDR ddPTM_BT-474_Trastuzumab_2h_R1 5 AVAAPRPDR 9 1 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;;; 147.24 8.4697e-05 1028120000.0 1696440.0 1984200.0 1915190.0 1910430.0 1699360.0 1635200.0 1950040.0 1505190.0 2170910.0 1794030.0 False True 1687306.5555322021 2050242.8975257727 2184832.104870098 2152290.2421192 1915763.4231041467 1522162.4728467595 1855709.1153237883 1617514.9209999514 1635918.3192036382 1679533.4694536407 1.0046281221660263 1.2207216675430264 1.3008565441573685 1.281481007234318 1.1406521262879938 0.9063007677613744 1.1048955850385394 0.963073943102864 0.9740313896428687 1.0 20.679629114961287 2.937064664556664 5.477393307299044 0.996011247028565 1.2108067716136015 0.5694875528894188 0.087954504006971 0.155985518045386 9.405183645610101 0.027179748803887505 0.02931155752528075 865.0967183197959 -2.937064664556664 0.21479552458503648 AVAGVMITAS(ph)HNR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVAGVMITASHNR 13 0 Q6PCE3 Q6PCE3 PGM2L1 Glucose 1,6-bisphosphate synthase 1 AVAGVMITAS(1)HNR;AVAGVMITAS(1)HNR;AVAGVMITAS(1)HNR 142.45 2.5986e-05 1734410000.0 2126100.0 1214770.0 1349900.0 1370040.0 1034900.0 1447850.0 1143490.0 1147990.0 2125430.0 1597380.0 True False 2114653.3138319156 1255202.8851060278 1539954.1864588633 1543486.923526634 1166688.3806671228 1347763.5373722983 1088175.020143997 1233658.8431751023 1601646.2558028603 1495433.8408141783 1.4140734655841463 0.8393570152342156 1.0297708560750813 1.0321332053621934 0.780167165424 0.9012525332705578 0.7276651032261967 0.8249504655474731 1.0710244827219206 1.0 20.512132655214003 AVAHCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVAHCPK 7 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 61.837 0.08907799999999999 60969000.0 283300.0 293060.0 274620.0 258470.0 245340.0 232080.0 296770.0 267890.0 379650.0 302050.0 False True 281774.74427758896 302814.32494148926 313284.10896016966 291192.27549847396 276582.594755891 216036.8558575566 282414.1013285063 287881.312117857 286090.3445493642 282772.9104019845 0.9964700786826554 1.070874591597244 1.107900005395888 1.0297742986926175 0.9781085266007501 0.763994173099689 0.9987311052074679 1.0180653857846937 1.011731796170516 1.0 18.109284391257805 3.2969103184389885 3.8256234093906505 0.9594750421757543 1.0601038774688634 0.266719087440078 0.07373734650400236 0.3173516431137167 9.38704928953748 0.022785945985335673 0.030717628294883427 1981.1178838578962 -3.2969103184389885 0.10062883529310906 AVAHHTDCTFIR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVAHHTDCTFIR 12 0 P62195-2;P62195;J3QSA9;J3KRP2;J3QQM1;J3QLH6;J3QRW1;J3QRR3 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ;; 149.23 3.8801e-05 1095890000.0 264233.0 356917.0 338970.0 368652.0 317904.0 360622.0 362229.0 214860.0 357505.0 337017.0 False True 262810.3988870459 368796.7665841171 386694.0296199425 415323.30540125864 358387.1900353666 335693.0499528774 344706.5994208424 230893.94423697292 269402.68307156704 315508.28652522987 0.8329746320815891 1.168897244017792 1.2256224198695338 1.3163625905845961 1.1359042070887349 1.063975382865367 1.0925437275108707 0.7318157845547087 0.8538688033793497 1.0 18.267318371156083 1.852881762736034 5.781876982535235 0.8407654919282762 1.1346533030666501 0.43847904608995736 0.13278744920045157 0.1914155318913928 8.17994029398846 0.060808795737681026 0.036234088713661294 71.26589813347803 -1.852881762736034 0.2938878111383739 AVAPS(ph)PSGAIGGLLEQFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVAPSPSGAIGGLLEQFAR 19 0 Q8NCE2;Q8NCE2-2;C9JSR1;Q8NCE2-3 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 AVAPS(0.77)PS(0.23)GAIGGLLEQFAR 66.779 0.022494 0.0 30055.0 41192.0 27830.0 14449.0 31183.0 38311.0 30941.0 22673.0 42629.0 36874.0 True False 29893.187219424424 42563.05081891019 31748.222097303613 16278.241918510656 35153.97021387856 35662.65074439348 29444.265623901734 24364.97439116118 32123.654149334532 34520.669750580324 0.8659503837964179 1.2329729152544806 0.9196873156486165 0.4715505821910365 1.0183455439269855 1.033081078729475 0.8529459548914676 0.705808275656401 0.9305628883053321 1.0 15.075172834693998 4.009412620876637 24.902120082220836 0.840124539108303 1.056178849533264 0.14330721316310213 0.1800636639194696 308.24517663052154 815480.7336415934 0.04438597870472018 0.09569246720973536 10219.099338160897 -4.009412620876637 0.21605431042496104 AVASS(ph)PAATNSEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVASSPAATNSEVK 14 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 AVASS(1)PAATNSEVK;AVAS(0.002)S(0.998)PAATNSEVK 367.52 5.331399999999997e-97 393110000.0 1082690.0 1024240.0 911520.0 904020.0 931340.0 1151450.0 1063940.0 922290.0 1315200.0 1032520.0 True False 1076860.9173381673 1058331.2092338451 1039854.0929261302 1018468.8393087423 1049940.6285153343 1071852.9717217474 1012473.157554507 991115.9630937264 991086.5827770941 966623.6896151546 1.114043581703343 1.0948740658892835 1.0757589578009732 1.0536352980488497 1.0861937688836811 1.1088627179709283 1.047432592881731 1.0253379611338957 1.0253075663515747 1.0 19.882594826611413 1.9692455660989423 2.8729871705011467 1.0196479574017943 1.0867717138312571 0.7690308367948269 0.017699586803690326 0.14115908742879255 2.1845682432230005 0.009522672878345722 0.005339954946052627 93.16345070359014 -1.9692455660989423 0.06712375642946289 AVCMLS(ph)NTTAIAEAWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVCMLSNTTAIAEAWAR 17 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 AVCMLS(0.959)NT(0.034)T(0.008)AIAEAWAR;AVCMLS(0.983)NT(0.007)T(0.01)AIAEAWAR 141.0 6.714499999999999e-07 51835000.0 52069.0 48385.0 42376.0 36829.0 38910.0 51743.0 47702.0 41965.0 63842.0 50831.0 True False 51788.666289409746 49995.46547564984 48342.17246120509 41491.547623837556 43864.95786236133 48166.12819992047 45394.47202066382 45096.64139395222 48108.99453897147 47586.92206139144 1.0882961966440627 1.0506135574633544 1.0158709655320701 0.871910723082903 0.9217859857750741 1.0121715402770073 0.9539274669225475 0.9476688014361061 1.010970923416869 1.0 15.538277523050354 4.081613902840869 3.421026012839037 0.956596660558891 1.070194033855455 0.5220904226370895 0.041855074680061964 0.17576142893994393 4.072460343908621 0.01085888496569433 0.026315911666254903 12067.405397252638 -4.081613902840869 0.11359737329656394 AVCMLSNTTAIAEAWAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVCMLSNTTAIAEAWAR 17 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 ;; 207.52 1.3962e-11 857376000.0 238768.0 229062.0 259773.0 261236.0 258095.0 284213.0 318288.0 231066.0 275117.0 254037.0 False True 237482.49961761854 236686.19019909675 296346.78041260655 294308.45081486955 290961.8684010832 264566.0242754381 302891.1934617634 248309.31824937378 207318.1017289277 237824.1411679821 0.9985634698450472 0.9952151578754926 1.246075267873198 1.2375045248538958 1.223432856614705 1.1124439385174418 1.2735931347180711 1.0440879425860543 0.8717285836112528 1.0 17.85953564273982 1.49064984786593 5.2647596094224385 0.9399302272068064 1.1569908449946802 0.45350163624301054 0.09702936216503097 0.14460426728737483 8.958188756214978 0.061713244080444936 0.026134907217488186 30.949229956226784 -1.49064984786593 0.21706061778787378 AVCMLSNTTAVAEAWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVCMLSNTTAVAEAWAR 17 0 Q9BQE3;F5H5D3;A0A1W2PQM2 Q9BQE3 TUBA1C Tubulin alpha-1C chain 0 ; 232.53 1.7131999999999999e-18 111970000.0 81571.0 93174.0 83618.0 86051.0 93181.0 79433.0 90809.0 88230.0 106113.0 97073.0 False True 81131.83079939013 96275.2402651276 95390.68757931479 96945.04777699217 105047.04802294238 73941.98367516934 86416.22174593239 94814.17062286209 79962.8729913517 90877.71803162339 0.8927582311338197 1.0593932412742362 1.0496598027045638 1.066763667450997 1.1559164369244879 0.8136426098357707 0.9509065986434816 1.0433159269015635 0.8798952562114999 1.0 16.471638988315966 2.748661618121601 24.99202048283665 0.9498850455746897 1.0471828149982316 0.28323762685948206 0.08420870592016702 1033.9099821823252 2558111.332212006 0.02627266278769408 0.027571026954236053 560.6110040362638 -2.748661618121601 0.09729776942354196 AVDDLNLHSYSNLPIWVNK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVDDLNLHSYSNLPIWVNK 19 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 274.43 2.0886e-39 1508710000.0 1836850.0 1966120.0 1857350.0 1716410.0 1817760.0 2154810.0 2208400.0 1907530.0 2398400.0 2181600.0 False True 1826960.6036932217 2031561.1156553598 2118848.735624392 1933707.3300125198 2049240.9612923677 2005853.0565771337 2101571.255092745 2049879.5748410756 1807346.4569134614 2042368.420238273 0.8945303822706382 0.9947084451189995 1.037446875220092 0.9467965284083877 1.0033649859574763 0.9821210691962818 1.0289873434527377 1.003677668792943 0.8849267541566312 1.0 20.961811704936512 4.7402286047914695 24.26199675077261 0.9902498151413542 0.8945303354260243 0.30525927572979705 0.04152424736430313 112.90981621332251 1642124.6494118706 0.009479256582927217 0.0605427066451019 54983.021841985945 -4.7402286047914695 -0.0957194797153299 AVDFAER ddPTM_BT-474_Trastuzumab_2h_R1 4 AVDFAER 7 0 P62917;E9PKZ0;G3V1A1;E9PKU4;E9PP36 P62917 RPL8 60S ribosomal protein L8 0 ;;; 156.16 0.0036352 3913910000.0 4222570.0 5272810.0 5065010.0 5173890.0 4769380.0 4695810.0 4677990.0 4060350.0 5084680.0 4917030.0 False True 4199836.152291629 5448312.293369045 5778119.382143868 5828903.943509112 5376732.272669985 4371199.707447744 4451697.752042791 4363353.935039526 3831628.74522129 4603220.935718821 0.9123690152916372 1.1835869643129038 1.2552339900325855 1.26626638714635 1.1680369784011626 0.9495958956758512 0.9670832258994387 0.9478914864116035 0.832379935425141 1.0 22.1342122569906 2.7320951396874333 5.988899707475945 0.9386803072124547 1.1706801629291415 0.5426839564527906 0.09957734019734069 0.12152604437479302 19.306738219435193 0.03252001079966819 0.0322019018156654 539.6288245572431 -2.7320951396874333 0.2319998557166868 AVDIPHMDIEALK ddPTM_BT-474_Trastuzumab_2h_R1 6 AVDIPHMDIEALK 13 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ;;;;; 215.51 3.0157e-08 4651697000.0 10568880.0 10115750.0 8813940.0 8977090.0 8445870.0 10247250.0 10365760.0 9979050.0 13705030.0 10727020.0 False True 10511978.324392956 10452446.62364999 10054866.13986015 10113588.673558231 9521401.481906487 9538881.726931863 9864328.587751392 10723737.38358916 10327608.99449329 10042412.39973613 1.04675827938207 1.040830251496606 1.0012401143896805 1.0070875673084259 0.9481189482077699 0.949859590229784 0.9822668294333922 1.067844752508962 1.028399211604241 1.0 23.25960254097779 -0.5522513003401359 6.402403658671424 0.9999999998344612 1.0085379230760998 0.003917700644155198 0.037755121619208534 0.0 0.0 0.04103412944311187 0.009671837063103659 0.2803810770235119 0.5522513003401359 0.0085379232416386 AVDIPHMDIEALKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVDIPHMDIEALKK 14 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 182.57 9.7841e-07 2829800000.0 4359300.0 3947100.0 3470200.0 3194200.0 3140300.0 4194300.0 4576600.0 3940200.0 6232400.0 4452800.0 False True 4335830.0131637575 4078476.8374276636 3958773.9964808845 3598585.3924912936 3540198.590983636 3904357.9133201847 4355212.3736902075 4234237.731930187 4696508.529881357 4168618.491766124 1.0401119751610541 0.9783761324005762 0.9496609018791896 0.863256112210613 0.8492498409188209 0.9366071567911748 1.0447615636433616 1.0157412438422164 1.1266342888316414 1.0 21.991137913352855 2.2452340131291497 6.91567618120769 1.0448128397320025 0.9311989110894142 0.4525268010975185 0.05943101317620559 0.13670740954771762 32.56206652168563 0.023093124409157974 0.018310095828059328 175.88711002266794 -2.2452340131291497 -0.11361392864258824 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF ddPTM_BT-474_Trastuzumab_2h_R1 2 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF 41 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ; 176.27 2.8071e-21 341750000.0 92339.0 128628.0 158994.0 155618.0 147086.0 185465.0 180728.0 79394.0 162667.0 155896.0 False True 91841.85708382727 132909.30522273193 181378.97319937797 175319.22284412695 165816.53025297547 172644.24108764966 171985.4961919946 85318.78343456304 122579.89747612657 145946.58381071952 0.6292840482168357 0.9106708889815753 1.2427764217805282 1.2012560915540256 1.1361453342959065 1.1829275929579466 1.1784139902517032 0.5845891092950442 0.839895626711636 1.0 17.155080916335475 1.7493466726395634 24.999999999999332 0.7739458234774821 1.0814697036477467 0.262356497754457 0.19697714174360273 3.3859746082623614 7862.889625774643 0.09435024325516517 0.05232228006963695 56.1496007588684 -1.7493466726395634 0.30752388017026466 AVDPDGDGHVSWDEYK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVDPDGDGHVSWDEYK 16 0 A0A5F9UP49;Q9BRK5;A0A5F9UJX7;Q9BRK5-6;G3V1E2;Q9BRK5-4;Q9BRK5-3;H0Y3T6;Q9BRK5-2 A0A5F9UP49 SDF4 45 kDa calcium-binding protein 0 ; 214.53 1.6940999999999998e-14 613990000.0 633660.0 882000.0 900610.0 830070.0 851820.0 993780.0 962340.0 942520.0 1237570.0 957760.0 False True 630248.4449662446 911356.8368197414 1027408.0597575504 935156.7768910052 960294.2278673006 925082.32770649 915787.9377041969 1012855.6284195848 932587.4560883886 896634.9368204102 0.7029041799343573 1.016419056847748 1.14584879259878 1.04296268022658 1.070998004240873 1.0317268374428483 1.0213609799231178 1.1296187409463534 1.0400971652916748 1.0 19.774161188631986 4.725277964256298 3.8620964807870317 1.0658166578170611 0.6720801489584142 0.8538419937691327 0.044004709058921565 0.07540501046451083 2.2489921687894956 0.010245750182875065 0.08231934225753688 53122.43383351934 -4.725277964256298 -0.39373650885864697 AVDWIFSHIDDLDAEAAMDISEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVDWIFSHIDDLDAEAAMDISEGR 24 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 188.32 1.2758e-17 58731000.0 11758.0 14571.0 12522.0 12507.0 13297.0 13820.0 13920.0 9950.5 13266.0 11322.0 False True 11694.696234436606 15055.986926644502 14284.988756824861 14090.384917628397 14990.294132506275 12864.655928780716 13246.636420436054 10693.056837615184 9996.772055292686 10599.420266748131 1.103333572980827 1.4204538123539874 1.347714157692084 1.3293543008037818 1.414256039977293 1.2137131659114364 1.249751032326986 1.0088341219152148 0.9431432855487354 1.0 13.371697738568125 1.8159083091133372 1.7592842900289272 0.9580272143496378 1.3220313014030363 0.7231924507025422 0.089207531392633 0.16523406680525288 0.9818658670308987 0.05937096970710799 0.025441682580893094 65.4497977894275 -1.8159083091133372 0.3640040870533985 AVEDIHGLFSLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVEDIHGLFSLSK 13 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 154.07 4.6018e-05 690520000.0 1546230.0 1840640.0 1680260.0 1529180.0 1535010.0 1923410.0 1829930.0 1701650.0 2316900.0 1904410.0 False True 1537905.269482302 1901904.5897096242 1916826.0029182662 1722774.031209642 1730484.4247829185 1790449.1939201253 1741409.2948885472 1828635.7638036187 1745931.039869412 1782868.9233525696 0.8626014225377661 1.0667663588713048 1.0751356859784167 0.9662931518095436 0.9706178632183765 1.0042517262308333 0.9767455543584997 1.0256703338375475 0.9792817727656062 1.0 20.765769209146022 1.7534876639954573 24.999999899013325 1.0041720704490096 0.9942422433564786 0.0038288478281732763 0.05654864961744949 50.592221910412896 84842.22621464131 0.02590571234483577 0.014367068808393986 56.68754693667629 -1.7534876639954573 -0.009929827092530985 AVEDINEHITDAQLEAMTELHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVEDINEHITDAQLEAMTELHDR 23 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 ; 226.39 5.8236e-33 82584000.0 69240.0 84169.0 78941.0 76945.0 84907.0 84234.0 82468.0 68018.0 80590.0 82726.0 False True 68867.21953328713 86970.51428376515 90055.20663252751 86686.22911065147 95719.40316678259 78411.10184550761 78478.70778164652 73093.84854840554 60729.67435067373 77446.35585470813 0.8892247901564828 1.1229774896952498 1.1628075412802377 1.1193067530934269 1.235944572348314 1.012456957853632 1.0133298967465314 0.9437997145473438 0.7841514772445144 1.0 16.240909735878315 2.0002553714748994 1.6343764993250693 0.896018020079396 1.1073121170541163 0.40842667391573795 0.09904312512352287 0.35351901503240757 1.7627172385567713 0.06308930894545532 0.030877523301902368 100.0588187465726 -2.0002553714748994 0.21129409697472024 AVEELHK ddPTM_BT-474_Trastuzumab_2h_R1 3 AVEELHK 7 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ;; 102.71 0.0085387 671950000.0 868100.0 875450.0 780550.0 817790.0 804430.0 918340.0 966060.0 865850.0 1248990.0 958530.0 False True 863426.2460549781 904588.8240292986 890444.6553377765 921322.1301501023 906869.3922698363 854857.317339833 919327.9870924171 930464.1236972116 941193.1501085487 897355.7947611801 0.9621894137149559 1.008060380632014 0.9922983286409346 1.0267077290065314 1.0106018120841223 0.9526403265355216 1.0244854855337338 1.0368954311426082 1.0488516991847536 1.0 19.77532059064449 2.0235160028543993 24.99981161068102 1.0321840336292158 0.9946786597999067 0.34439064118270757 0.02371231203165656 242.6057143989977 257912.55769124712 0.008734556145958873 0.00645060032617148 105.56404006670755 -2.0235160028543993 -0.037505373829309185 AVEES(ph)S(ph)DEER ddPTM_BT-474_Trastuzumab_2h_R1 2 AVEESSDEER 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 AVEES(1)S(1)DEER;AVEES(1)S(1)DEER 123.84 0.00066005 763450000.0 912500.0 941950.0 789570.0 853330.0 818480.0 836190.0 864280.0 828990.0 950980.0 898390.0 True False 907587.2013882803 973302.236329201 900734.5929345305 961361.4905061035 922708.5764889611 778386.1534795325 822471.4745297747 890853.4433259245 716623.721479137 841053.9810496246 1.0791069560786373 1.157241102544372 1.0709593120413332 1.1430437429311453 1.0970860340467476 0.9254889353333974 0.9779056910275139 1.0592107800430963 0.8520543718071457 1.0 19.681838873839144 2.823552474613891 6.225888177668145 0.975736571364355 1.1131446980733692 0.6284796818281915 0.055939480531879165 0.16638957634366353 9.96639272337531 0.01695932682970129 0.018000388271329652 666.1200018933289 -2.823552474613891 0.13740812670901426 AVEES(ph)S(ph)DEERQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVEESSDEERQR 12 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR 130.66 0.0025415 1013940000.0 851040.0 1031030.0 882050.0 1111230.0 1062570.0 1111430.0 1180000.0 1022300.0 1309640.0 1180540.0 True False 846458.0951994319 1065347.210279204 1006234.9730839622 1251911.6040630208 1197881.991154185 1034599.4601248003 1122918.8919622507 1098589.2171342152 986896.7702769106 1105196.9264888577 0.7658889333764046 0.9639433342108055 0.9104576288324547 1.1327498059918304 1.0838629410233542 0.9361222740744121 1.0160351201208047 0.9940212380289232 0.8929601111108956 1.0 20.075872024512073 5.011690959832536 1.4573747819451577 1.0034628202536449 0.5213352272650378 0.4985026646730054 0.06915877174975484 1.9673351692788217 2.294971208821168 0.01885290804081385 1.6604942411645305 102728.50309027609 -5.011690959832536 -0.4821275929886071 AVEFHEDLFPDTAGCVPATDPHSWWAGDNQQVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVEFHEDLFPDTAGCVPATDPHSWWAGDNQQVQK 34 0 A0A0A6YYL4;P57737;P57737-3;I3L167;P57737-2;P57737-4;E7EP81 A0A0A6YYL4 CORO7-PAM16;CORO7 Coronin;Coronin-7 0 56.984 0.023516 48283000.0 16131.0 14006.0 16271.0 12523.0 10649.0 16323.0 17955.0 13561.0 14345.0 17091.0 False True 16044.15248832258 14472.181243194216 18561.8153699327 14108.410515987878 12005.087028431923 15194.629430208957 17086.44805523918 14572.990681362706 10809.866963151937 16000.237747658737 1.0027446305083978 0.9044978875586948 1.1600962224857434 0.881762554937805 0.7503067902968247 0.9496502283181597 1.067887135473308 0.9107983838237106 0.6756066462033484 1.0 13.965805721838333 AVEHINK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVEHINK 7 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 ;;; 124.34 0.004155699999999999 11814030000.0 17940300.0 16782300.0 14388200.0 13632900.0 13345900.0 16177300.0 15448300.0 13568100.0 19760600.0 16610100.0 False True 17843711.41815473 17340888.71038543 16413933.495523665 15358823.742187262 15045421.25765326 15059001.328268042 14701006.710763087 14580620.519415785 14890864.908474052 15550029.197377926 1.1475034028337112 1.1151675980974673 1.0555564421892798 0.9877038523359876 0.9675493895657924 0.9684227043642669 0.9454005856942055 0.9376587229736132 0.9576100931685052 1.0 23.890413953433832 4.022753924716822 1.1656325494093294 0.9547091496682868 1.160195263252901 0.9459470712980389 0.016156383072069035 0.1189292938820497 0.2719964787901194 0.005003366896464612 0.02216158397181758 10537.896402137434 -4.022753924716822 0.2054861135846141 AVEHMFETEDGSKDEWR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVEHMFETEDGSKDEWR 17 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 0 ;; 225.32 1.4637000000000001e-15 338024000.0 373240.0 364277.0 349101.0 343852.0 336197.0 433130.0 418170.0 382800.0 554020.0 416070.0 False True 371230.5173108625 376401.7397349038 398251.3863597115 387383.6279440605 379009.69515426067 403188.74257835 397941.5195354698 411366.4798190136 417489.19448765705 389516.056384552 0.9530557501443869 0.9663317687815647 1.0224261101230074 0.9945254414919773 0.9730271421214051 1.0351017267958258 1.0216305926618845 1.0560963356357502 1.0718151091453043 1.0 18.57132327381214 2.67797229853347 5.34012017712875 1.0409477888487686 0.9839782107926494 0.5454930229692215 0.024970002225530304 0.1697512163042684 10.099239655625183 0.008399728061539942 0.007966717581932741 476.40059863176435 -2.67797229853347 -0.05696957805611924 AVELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVELLR 6 0 P49721;A0A087WVV1 P49721 PSMB2 Proteasome subunit beta type-2 0 ; 101.23 0.085526 252730000.0 373200.0 418210.0 413270.0 422030.0 432840.0 406780.0 405500.0 359410.0 402610.0 405170.0 False True 371190.7326664178 432129.867036716 471454.8237927653 475458.95472828933 487959.6083563217 378660.25605712127 385884.41583956993 386230.9992469999 303392.16019760177 379311.7037165112 0.9785902439325657 1.1392473862596129 1.2429219008362573 1.2534782082116727 1.2864343588011495 0.9982825532325867 1.0173279971555294 1.018241713774432 0.7998491932227593 1.0 18.533024361316194 2.6284308737293607 6.217456373587086 0.9736433528585452 1.184945725612729 0.5373672149707374 0.09901595224126046 0.20358264252690195 9.991905658116721 0.03377881200802153 0.03177274697736177 425.0410480104564 -2.6284308737293607 0.21130237275418373 AVEQHNGK ddPTM_BT-474_Trastuzumab_2h_R1 7 AVEQHNGK 8 0 Q9BRA2;I3L0K2;I3L3M7 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 0 ;;;;;; 106.6 0.0041644 2074914000.0 3426483.0 3034417.0 2557852.0 2438141.0 2485528.0 2152435.7 2999141.0 2909170.0 3931441.0 3559639.0 False True 3408035.196246046 3135415.735501189 2917975.328351859 2746809.4006117685 2802045.257921336 2003642.8863476317 2854061.091998778 3126267.0378659335 2962590.044160402 3332459.7914597304 1.0226785646386483 0.9408712877906233 0.8756220662676584 0.8242588275636997 0.8408339284699803 0.6012504311327244 0.8564427691860019 0.9381259590521639 0.8890099894836802 1.0 21.668156037583177 4.4494799773927545 1.8008337634100522 0.8432747166469288 1.034322824233336 0.23873235721986885 0.09748162510995674 0.7454373337241232 3.710144597252703 0.02722995990142764 0.2003087331854001 28150.102295940396 -4.4494799773927545 0.19104810758640722 AVETVHNLCCNENK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVETVHNLCCNENK 14 0 X6RLT1;H0UI80;Q8IXH7-4;Q8IXH7 X6RLT1 NELFCD;TH1L Negative elongation factor C/D 0 176.89 2.1597e-06 364220000.0 132650.0 136310.0 124280.0 114940.0 116450.0 151550.0 124960.0 130350.0 198550.0 159060.0 False True 131935.82713880055 140846.9959488651 141777.54373887507 129491.3922149364 131279.21724677412 141073.70521032708 118915.20740644331 140077.3789038883 149620.01293369243 148908.65462188295 0.8860185291030885 0.9458617184240335 0.9521108366661724 0.8696028618601657 0.8816090480444239 0.9473841904525241 0.7985782136599068 0.9406933348473298 1.0047771455165975 1.0 17.1840680807223 1.3936018671570711 4.68799046233088 0.9995826880518022 0.899441616766633 0.47627791986954204 0.04360532878064386 0.1837467073718249 6.291895863834885 0.030823938832769824 0.010943218469084125 24.751519594426497 -1.3936018671570711 -0.10014107128516914 AVEVAWETLQEEFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVEVAWETLQEEFSR 15 0 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;C9JMB8;A0A2R8YE78;A0A2R8YFD1 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 ;; 267.43 4.5229e-25 80577300.0 23733.9 28330.0 32146.7 30553.1 33917.9 38234.8 33001.3 27860.2 34350.2 31548.5 False True 23606.119319484184 29272.94692415337 36672.67593587459 34421.11932732006 38237.14351785621 35591.718271038015 31404.901041791403 29939.269595229056 25885.05347909806 29535.047719970255 0.7992578696096977 0.9911257703626575 1.241666385088594 1.165433001960111 1.2946362531861424 1.2050672343072775 1.0633096428199382 1.01368617647384 0.8764182040442672 1.0 14.850140322483792 1.674788159895524 2.4717056444061427 0.9414402651577491 1.1253221209912856 0.20257036963268427 0.13605994420993206 0.40328601376467926 5.47426737940664 0.09763350738835383 0.04040060106433259 47.2920521582571 -1.674788159895524 0.18388185583353645 AVEVQGPSLESGDHGK ddPTM_BT-474_Trastuzumab_2h_R1 3 AVEVQGPSLESGDHGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 250.27 8.690899999999999e-21 915140000.0 1393610.0 1356870.0 1150640.0 1064230.0 989170.0 1334720.0 1331120.0 910970.0 1659100.0 1170720.0 False True 1386106.9586046285 1402032.5977047633 1312640.1104578318 1198961.4088820384 1115134.9362300693 1242453.947992924 1266728.6402277914 978951.2072119305 1250237.035801003 1096003.64729618 1.2646919214403416 1.2792225656945129 1.1976603487553072 1.0939392508773609 1.0174554975077736 1.1336220924611282 1.15577046057537 0.8932006837997158 1.1407234263182553 1.0 20.063821168651224 3.829277279765344 1.9598577858009054 1.050181734209544 1.2748317218131417 0.5791105936741725 0.07430764816739159 0.24082903035850853 1.790152628097088 0.02186931697251618 0.050602987896664814 6749.5882454269595 -3.829277279765344 0.22464998760359767 AVEYLLMGIPGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVEYLLMGIPGDR 13 0 P54727;P54727-2 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 ; 158.41 9.2298e-05 665350000.0 511160.0 633570.0 603270.0 589260.0 549190.0 611250.0 643630.0 571070.0 646440.0 652840.0 False True 508407.9713552149 654657.9944488477 688205.1722831599 663860.2555818112 619126.0911958426 568995.7262277292 612495.1579946313 613686.1432347017 487133.5238522087 611175.1922755555 0.8318530885756129 1.0711462158851623 1.1260358420648635 1.0862028825320875 1.0130091977239521 0.9309862923415106 1.0021597174357835 1.0041083980352628 0.7970440063813632 1.0 19.221226459715933 2.9205130378441577 5.185435188291084 0.956996550135776 1.0400532218837255 0.14521603550127815 0.09287266806037886 0.43828422007224516 20.593902525709296 0.028791870288103146 0.030959159838865647 832.7469252935855 -2.9205130378441577 0.0830566717479495 AVEYLLTGIPGS(ph)PEPEHGSVQESQVSEQPATEAAGENPLEFLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLR 43 0 P54725-2;P54725;A0A494C0B4 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 1 AVEYLLTGIPGS(0.992)PEPEHGS(0.008)VQESQVSEQPATEAAGENPLEFLR;AVEYLLTGIPGS(0.998)PEPEHGS(0.002)VQESQVSEQPATEAAGENPLEFLR;AVEYLLT(0.001)GIPGS(0.983)PEPEHGS(0.015)VQES(0.001)QVSEQPATEAAGENPLEFLR 283.4 4.690799999999998e-81 546497000.0 142391.5 223092.0 283337.0 267027.0 250389.0 263498.0 266412.0 221946.0 247511.0 278542.0 True False 141624.87998518275 230517.482358038 323228.3867906471 300832.59082110494 282274.55497812375 245283.00346757355 253524.63376732817 238508.73753895194 186515.23052747987 260765.21108819608 0.5431126314517558 0.8840039719871693 1.2395379945115637 1.1536530872569395 1.0824854810968354 0.9406277871345877 0.9722333462709525 0.914649375749296 0.7152611721062616 1.0 17.992391885653348 -0.676398790678223 8.216157394536399 0.9999999958699403 0.9550548978733214 0.0024680588288369387 0.1926115181713743 0.0 0.0 0.19135483477264556 0.045102766757481226 0.2106692791956993 0.676398790678223 -0.04494509799661883 AVEYLLTGIPGS(ph)PEPEHGSVQESQVSEQPATEAGENPLEFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLR 42 0 P54725-3 P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 AVEYLLTGIPGS(0.996)PEPEHGS(0.004)VQESQVSEQPATEAGENPLEFLR;AVEYLLTGIPGS(0.98)PEPEHGS(0.02)VQESQVSEQPATEAGENPLEFLR 259.5 1.2691999999999992e-66 328570000.0 57645.0 105224.0 113097.0 119682.0 115461.0 124642.0 104453.0 93235.0 107682.0 112971.0 True False 57334.64572496162 108726.31723074883 129020.07454325364 134833.72892872815 130164.27395903629 116025.79191570824 99400.20934079075 100192.66913773713 81145.21396487464 105761.09406066094 0.5421147184055833 1.0280369940990506 1.2199200063990654 1.2748896948001704 1.2307387240564902 1.09705551882018 0.9398560994818964 0.9473490230752535 0.7672501375442705 1.0 16.690449480636033 2.1679937148938233 4.1424919056745875 0.9091578941714832 1.088105028876248 0.1156230319130066 0.2011194735052948 0.4628356900613045 15.521513720754097 0.08284532450671127 0.06034546489209283 147.22911952924497 -2.1679937148938233 0.17894713470476475 AVFDETYPDPVR ddPTM_BT-474_Trastuzumab_2h_R1 5 AVFDETYPDPVR 12 0 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;; 215.06 9.8462e-11 1342520000.0 1040875.0 1429700.0 1226364.0 1352708.0 1294691.0 1245406.0 1268176.0 1184160.0 1484680.0 1316184.0 False True 1035271.0446520841 1477286.700228099 1399025.3914530233 1523960.6941037253 1459562.2246152258 1159314.0145903816 1206829.481977221 1272528.0322426418 1118800.5076927438 1232184.010278185 0.8401919161557334 1.198917278511493 1.1354029753536334 1.2367963562192852 1.1845326772952578 0.9408611091525594 0.9794230990749185 1.0327418807807356 0.9079816799766433 1.0 20.23278628874381 2.7351778054227776 24.99864224356431 0.9796673670151584 1.1310355690445004 0.31907118326328643 0.10636703760943086 354.631144031745 2620676.1208067406 0.0334374114107668 0.03270708691198574 543.4727902956926 -2.7351778054227776 0.15136820202934198 AVFPSIVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVFPSIVGR 9 0 C9JTX5;F8WCH0;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63267-2;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;Q6S8J3;A5A3E0;P0CG38 C9JTX5;P60709;P63261;P68133;Q6S8J3 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEI Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I 0 ;; 225.57 6.2408e-07 4461342000.0 922678.0 969897.0 962273.0 838566.0 769616.0 995064.0 948419.0 823590.0 1009474.0 966928.0 False True 917710.4041671635 1002179.4353298815 1097752.6741731458 944728.3696198908 867622.0357285818 926277.5678087011 902540.3496575825 885050.4679052795 760702.6589585809 905217.8272112901 1.013800630721513 1.1071141168499758 1.2126944931641468 1.0436475522475304 0.9584676855088793 1.0232648319159707 0.9970421731949798 0.9777209874797315 0.8403531570982004 1.0 19.7879054715207 3.4540419399711575 4.999337390047534 0.9718303275100468 1.1138640306155712 0.5056059269410563 0.06445652983518858 0.1509307745503822 10.08741370433584 0.01809824354702255 0.025613880323296156 2844.735811323327 -3.4540419399711575 0.14203370310552432 AVFPSIVGRPR ddPTM_BT-474_Trastuzumab_2h_R1 6 AVFPSIVGRPR 11 1 C9JTX5;F8WCH0;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63267-2;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;Q6S8J3;A5A3E0;P0CG38 C9JTX5;P60709;P63261;P68133;Q6S8J3 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEI Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I 0 ;;;;; 242.49 8.1966e-16 140330807000.0 12851278.0 16453243.0 15728598.0 15822162.0 13389424.0 13732859.0 16276140.0 12258887.0 17783530.0 14074910.0 False True 12782088.14715922 17000879.24705959 17943047.882975407 17825246.086917173 15094487.781066306 12783538.78100287 15488800.927307205 13173707.397306878 13401017.31859333 13176637.1936633 0.9700569241829153 1.2902289861358092 1.361731951730772 1.3527917498927124 1.145549320301944 0.970167015537965 1.1754744932004226 0.9997776521950661 1.0170286334542122 1.0 23.65147889168585 3.0032028407001636 6.503474680711976 1.042818942536731 1.2554045576628892 0.42935364916236307 0.11432399376222241 0.1366614895285149 27.958645076224396 0.03413627158068155 0.03928535136882025 1007.4020741601765 -3.0032028407001636 0.21258561512615826 AVFVDLEPTVIDEVR ddPTM_BT-474_Trastuzumab_2h_R1 10 AVFVDLEPTVIDEVR 15 0 P68363;P68363-2;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;F8VX09;F8VRK0;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain 0 ;;;;;;;;; 317.31 5.097199999999998e-56 6157940000.0 2205129.0 2828850.0 2661256.0 2718439.0 2789548.0 2743715.0 2640584.0 2424881.0 2990755.0 2751134.0 False True 2193256.8304768642 2923006.562174067 3035937.7127481783 3062593.0986721707 3144780.4028536193 2554048.440060392 2512848.863909536 2605837.9335162225 2253723.504313801 2575554.272755681 0.8515669243227468 1.1349038896573644 1.178751208958185 1.1891005874224458 1.2210111183131473 0.9916500176591972 0.975653625509101 1.01175811400322 0.8750440742615214 1.0 21.296451510554277 2.6006893626912726 7.126936891065747 0.9732712083776559 1.1235369818117358 0.3355068812766929 0.10140896684214158 0.305898613814747 16.516049025279266 0.033542920333998895 0.03155540944381023 398.73959433266845 -2.6006893626912726 0.15026577343407987 AVGHPFVIQLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVGHPFVIQLGR 12 0 O14980 O14980 XPO1 Exportin-1 0 ; 119.53 0.00050777 2266000000.0 3622200.0 4558600.0 4397500.0 4302900.0 3477100.0 3902100.0 4208200.0 3426000.0 4831500.0 3955300.0 False True 3602698.4776642527 4710330.245268112 5016629.776244796 4847646.698813722 3919888.07461364 3632357.011555376 4004633.28911487 3681665.5168754947 3640841.563783102 3702869.367697305 0.9729477656147115 1.272075727639648 1.354795235286541 1.3091595239905307 1.0586082535909962 0.9809573740955981 1.0814946171339612 0.9942736703036876 0.9832487193700878 1.0 21.82021222337069 3.1244482988869073 5.473087974145159 1.0135709237491952 1.2386383447805192 0.5242289518661738 0.09886733730248641 0.16426361944130669 7.250566353749514 0.029410163957199427 0.035469695364881065 1331.8284837390304 -3.1244482988869073 0.22506742103132393 AVGMPS(ph)PVSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 AVGMPS(0.994)PVS(0.006)PK;AVGMPS(0.995)PVS(0.005)PK 144.57 3.8445e-05 192027000.0 425810.0 442890.0 360410.0 362150.0 376160.0 429540.0 438900.0 431390.0 575350.0 449330.0 True False 423517.48627193813 457631.3259173413 411152.5952601219 407998.15286792355 424061.74632500246 399846.9108283986 417668.7302391801 463582.5123540337 433562.70179501345 420653.37470923294 1.0068087212296464 1.0879059896611278 0.9774142321913423 0.9699153207791165 1.0081025657243936 0.9505377464397704 0.9929047414106308 1.1020534725876727 1.0306887519794743 1.0 18.682272392844148 1.7714920006632486 24.99999999999883 1.054774035981415 0.9990247367401702 0.18366014609118442 0.04190624260394345 42.744988456571704 32465.84303314368 0.019766082176292728 0.010965071737659487 59.08700821477744 -1.7714920006632486 -0.05574929924124483 AVGMPSPVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 AVGMPS(0.005)PVS(0.995)PK;AVGMPS(0.011)PVS(0.989)PK;AVGMPSPVS(1)PK;AVGMPSPVS(1)PK 199.51 5.2461e-08 1711840000.0 2310640.0 1900340.0 1690130.0 1641410.0 1559100.0 2166640.0 2177940.0 1959240.0 3096790.0 2057040.0 True False 2298199.7709762356 1963591.6681202096 1928085.6131266903 1849212.337702439 1757642.143490301 2016865.276521959 2072584.721661241 2105448.437619133 2333627.599360003 1925757.9460794507 1.193400123652622 1.019646146140943 1.0012087017747886 0.9602516980221492 0.9127014882989797 1.04730985564826 1.076243629621629 1.0933089705824683 1.2117969468130265 1.0 20.876994947512568 2.1745739602485865 2.45302938227209 1.1079483149645635 1.011932755417801 0.15978671048208504 0.08300243037962411 0.47587852477165776 5.769657421680912 0.038638412834714315 0.025410775921650884 149.4768579431148 -2.1745739602485865 -0.09601555954676244 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPK 33 0 O00505 O00505 KPNA3 Importin subunit alpha-4 0 ; 286.6 1.4144999999999997e-74 533200000.0 572050.0 565990.0 551376.0 547374.0 548405.0 658440.0 723600.0 558770.0 774910.0 752530.0 False True 568970.1463607298 584828.6350018202 629004.9481538932 616671.4922764797 618241.1260989022 612923.5926010397 688596.7035795647 600468.2547765676 583943.8137620126 704502.8911266534 0.8076193206969282 0.8301295031828073 0.8928351552226811 0.8753285473254593 0.8775565492856958 0.8700086263958995 0.9774221117508102 0.8523290143157372 0.8288735519994239 1.0 19.42624610149057 -4.999999999999999 0.13554800627927058 1.3934457066496604 0.8256145261663494 0.44074179480313935 0.04441565340898336 143.0595550804711 1.2046397053508944 15.614023306395477 0.3064175464995737 1.0000000000000021e-05 4.999999999999999 -0.5678311804833109 AVGS(ph)MPQAGRAGGNS(ph)TLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVGSMPQAGRAGGNSTLQR 19 1 Q6NSZ9-4 Q6NSZ9-4 2 AVGS(0.993)MPQAGRAGGNS(0.56)T(0.448)LQR;AVGS(0.992)MPQAGRAGGNS(0.558)T(0.45)LQR 74.744 0.010336 575860000.0 275230.0 180563.0 148477.0 177276.0 194630.0 248920.0 150325.0 220759.0 348680.0 199211.0 True False 273748.1922609277 186572.93030236143 169381.27101478056 199719.12342348244 219414.97683760984 231712.74629465246 143053.2054527334 237233.1575714882 262752.4860726256 186497.18342688214 1.4678408929872824 1.000406155600248 0.9082242846910767 1.0708961913185358 1.1765055793651351 1.2424463578319802 0.7670529003394772 1.2720468653324062 1.408881792446158 1.0 17.5087943167846 1.5980264861075684 24.99999999999872 1.255381542924267 1.0834886223028104 0.08170325549734114 0.20214402182427652 1.5832242742787124 4011.5235905292784 0.10304481299418493 0.048613381929328785 39.6302202609262 -1.5980264861075684 -0.17189292062145656 AVHADFFNDFEDLFDDDDIQ ddPTM_BT-474_Trastuzumab_2h_R1 2 AVHADFFNDFEDLFDDDDIQ 20 0 Q8WXC6 Q8WXC6 MYEOV2 Myeloma-overexpressed gene 2 protein 0 ; 102.37 0.00030102 28233000.0 45373.0 51300.0 42771.0 42329.0 48101.0 50407.0 50335.0 43993.0 51538.0 47583.0 False True 45128.71680941422 53007.489488495135 48792.78502780354 47687.847059909865 54226.3772330363 46922.48273531474 47900.103751627095 47275.98105192755 38837.15047381838 44546.212202144154 1.0130764116290458 1.1899438104401547 1.0953296052734869 1.0705252972690347 1.217306131146796 1.0533439413970243 1.0752901623658477 1.0612794829198071 0.8718395696042821 1.0 15.443015143069777 1.4224445775248393 3.8082835155747956 0.9373249242258542 1.104811831095495 0.4988282341514605 0.06497812602086822 0.16618532608952252 4.202783768244387 0.045022500950634134 0.01579293482447559 26.451151169111295 -1.4224445775248393 0.16748690686964085 AVIFCLSADKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVIFCLSADKK 11 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ; 146.16 5.7565e-05 4391500000.0 2546100.0 3094800.0 2289300.0 2344600.0 1975200.0 3648600.0 3821800.0 3415200.0 6106400.0 3845100.0 False True 2532392.0804983056 3197808.547153895 2611613.5410476886 2641426.119602746 2226730.012072377 3396380.869880563 3636924.9333062125 3670059.5660342053 4601559.541567859 3599702.4260442737 0.7035003955260715 0.8883535827898914 0.7255081759404208 0.7337901323430833 0.6185872465350806 0.94351712111183 1.010340440085444 1.0195452655977586 1.2783166486971342 1.0 21.779446218597347 2.4255253433710786 2.467882105644865 1.0772038558117882 0.7426171402549668 0.7302618134033378 0.09811436170659531 0.15594763732680944 1.9394685267015992 0.03863741313541742 0.03135422369725668 266.39455474888257 -2.4255253433710786 -0.3345867155568214 AVIFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVIFDR 6 0 P35232;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;P35232-2 P35232 PHB Prohibitin 0 121.68 0.045473 476940000.0 375260.0 531090.0 491750.0 404440.0 469720.0 554030.0 377710.0 399480.0 508960.0 383170.0 False True 373239.64185530506 548767.0095993158 560984.1256323761 455642.06253183284 529536.0577514366 515731.2101463378 359438.7243076796 429291.2261183371 383533.6277145914 358715.7625516586 1.040488545026105 1.529810136292207 1.5638680654619652 1.2702036266561214 1.4761995792565101 1.4377154950699091 1.0020154167491229 1.196744807266491 1.0691853209527105 1.0 18.452481615482107 2.244578065374236 24.99505944199121 1.0926218716217844 1.3997699307618292 0.5171099896010667 0.15005659877823235 116.96441112903081 485843.71263381257 0.05141253821671511 0.04197435840382979 175.6216549558922 -2.244578065374236 0.30714805914004484 AVIGIGIEEEDRK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVIGIGIEEEDRK 13 1 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ;;; 235.21 1.7815000000000002e-16 1734060000.0 775180.0 767035.0 687932.0 737702.0 720682.0 859095.0 855286.0 735433.0 1116338.0 830754.0 False True 771006.5170105946 792565.2962925511 784786.8459878649 831094.9975617093 812456.5808831219 799707.7847421042 813912.5486701928 790314.7449131048 841231.4580628165 777734.5684757171 0.9913491675208563 1.0190691380041146 1.0090677176995868 1.0686100775880045 1.0446450676295083 1.028252847638562 1.0465171302149794 1.0161754111843628 1.0816433937243488 1.0 19.56891833905417 3.878181817061126 10.440762901515004 1.0400187554806295 1.007420329525541 0.3173740101706415 0.023056985898525086 0.4969587938417295 40.112283742756226 0.00558523306569576 0.010082476471186758 7554.084126443856 -3.878181817061126 -0.03259842595508844 AVIVSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVIVSSPK 8 0 Q14966;Q14966-3;Q14966-5 Q14966 ZNF638 Zinc finger protein 638 1 AVIVS(0.084)S(0.916)PK;AVIVS(0.207)S(0.793)PK;AVIVS(0.006)S(0.994)PK;AVIVS(0.019)S(0.981)PK 157.78 0.00038964 4199260000.0 11649900.0 9127450.0 7727660.0 7301700.0 6418880.0 10544900.0 11123900.0 9263290.0 17352200.0 10783000.0 True False 11587178.23282556 9431251.655589968 8815647.357975172 8226094.471339823 7236286.320317507 9815955.883024588 10585794.459575342 9954563.737833519 13075982.817567438 10094819.70820924 1.1478340938969631 0.9342664780749229 0.8732842797386635 0.8148827526508724 0.7168316551936894 0.9723755516943133 1.048636307091927 0.9861061440986743 1.2953161319893485 1.0 23.267111808818996 1.9546646611285994 1.540243689273536 1.1133234456769796 0.8957509316419552 0.3060291226735946 0.12980312745462894 0.49038665767777556 2.165793300647801 0.09080552017415074 0.042162689704105534 90.08752614937913 -1.9546646611285994 -0.21757251403502442 AVLFCLS(ph)EDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVLFCLSEDKK 11 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 1 AVLFCLS(1)EDKK;AVLFCLS(1)EDKK 188.09 2.0215e-06 2902800000.0 2981400.0 2202500.0 1816590.0 1667170.0 1176810.0 2088600.0 2606100.0 2307000.0 3976900.0 2625400.0 True False 2965348.4736646772 2275808.8810606315 2072350.0819166617 1878233.5510612084 1326669.7780006542 1944219.998035557 2480032.986731207 2479160.054708629 2996846.282729799 2457844.7242819783 1.2064832429684744 0.9259368008796708 0.8431574466210704 0.7641790925624504 0.5397695651372852 0.7910263731585123 1.009027528155063 1.0086723665722526 1.2192984581665474 1.0 21.22896234484583 2.100305168794479 3.747474762491975 1.0644962986570907 0.8315736492589806 0.28906870679509367 0.16525086421137034 0.3195656576537797 8.588385513304619 0.0733227855088192 0.05084501300102575 125.98103407463135 -2.100305168794479 -0.23292264939811014 AVLFCLSEDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVLFCLSEDKK 11 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ; 199.68 7.9274e-08 53665000000.0 14847900.0 14264100.0 10303200.0 11931200.0 12714500.0 20947600.0 20659100.0 18764900.0 32678000.0 19929300.0 False True 14767960.556156773 14738871.945669482 11753801.002980193 13441688.696666518 14333616.210254263 19499541.71734638 19659740.407574028 20165232.124231495 24624944.76276603 18657395.01166784 0.7915338956441283 0.7899748028303084 0.6299808197033765 0.720448309544845 0.7682538854588435 1.0451374216578404 1.0537237591464053 1.0808171297022275 1.3198490329098056 1.0 24.153244232067838 2.687228580261178 2.2702117374590616 1.1150726976897338 0.7268115891946709 0.8080958050712199 0.08827402843479117 0.12964511135323833 1.317753207778577 0.03204688238384562 0.030764228824882715 486.6632815918718 -2.687228580261178 -0.3882611084950629 AVLHTDSSLPFS(ph)FPDELPNSCLLAALSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVLHTDSSLPFSFPDELPNSCLLAALSDR 29 0 Q8NCE2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 AVLHTDSS(0.001)LPFS(0.999)FPDELPNSCLLAALSDR 194.67 3.7456e-19 456900000.0 56422.0 56402.0 53753.0 65571.0 54522.0 65999.0 64161.0 55815.0 80504.0 69768.0 True False 56118.230221073485 58279.306474270976 61320.955170548325 73872.28187685384 61465.05352278759 61436.64447493481 61057.28731117796 59980.198722827176 60664.86789833268 65315.34650861011 0.8591890454669144 0.8922758523004755 0.9388445204445905 1.131009568587617 0.9410507148528261 0.9406157627417011 0.9348076765255952 0.9183170867036641 0.9287996028672314 1.0 15.995134387103917 7.9999462458372985 0.005905172128366676 1.8281307383407537 1.7004256158647684e-05 0.056584942369831914 0.0678497522901653 179308.1117833606 81.89896447825735 11610.562986136127 13833.852413876815 99987623.4125905 -7.9999462458372985 -1.828113734084595 AVLQLLVEGALHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVLQLLVEGALHR 13 0 Q6P9B9 Q6P9B9 INTS5 Integrator complex subunit 5 0 169.62 2.8193000000000006e-05 51202000.0 59056.0 75201.0 62722.0 75191.0 70104.0 65824.0 71186.0 63114.0 74419.0 68401.0 False True 58738.049057738455 77704.01982503562 71552.71241060284 84710.172890493 79031.3288610377 61273.74181302916 67742.46122307183 67823.8871663982 56079.434613510195 64035.58961895765 0.9172719327995246 1.213450524738066 1.1173897646039594 1.322860824653275 1.2341782020172198 0.9568701120367158 1.0578876781828954 1.059159251440999 0.8757541696298827 1.0 15.966586326785727 2.7352131192849303 24.93067866729977 1.0046524020457261 1.170508604320147 0.3723428962369283 0.10990177294030573 324.77647801293875 2418785.0005442835 0.035076077984171374 0.03437325663178372 543.5169835892004 -2.7352131192849303 0.16585620227442077 AVLS(ph)PGSVFS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVLSPGSVFSPGR 13 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 2 AVLS(0.92)PGS(0.08)VFS(1)PGR;AVLS(0.789)PGS(0.212)VFS(1)PGR;AVLS(0.987)PGS(0.013)VFS(1)PGR 187.75 9.7821e-06 197705000.0 778674.0 1058190.0 943580.0 1026920.0 976130.0 855900.0 760562.0 726932.0 866180.0 807590.0 True False 774481.7057028137 1093411.2144606363 1076427.8622556138 1156927.9667075207 1100434.369524204 796733.6475718829 723770.7104310113 781179.3571259016 652721.5452173535 756048.914787416 1.0243804211009027 1.446217556926299 1.423754258754913 1.5302289892616576 1.4555068435401715 1.0538123023374837 0.9573067248360767 1.033239175200128 0.8633324279036684 1.0 19.528120051261922 2.6456170721929753 4.467026191287952 0.977332932135063 1.3907425693963393 0.6843497395713531 0.13446208870208182 0.13168459873146066 4.557049200811558 0.0447838970416463 0.042206796833665475 442.19830362621747 -2.6456170721929753 0.41340963726127633 AVLS(ph)PGSVFSPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 AVLSPGSVFSPGR 13 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 AVLS(0.877)PGS(0.122)VFSPGR;AVLS(0.598)PGS(0.402)VFSPGR;AVLS(0.983)PGS(0.017)VFSPGR;AVLS(0.937)PGS(0.063)VFSPGR 198.29 1.3323e-07 1835520000.0 1547570.0 2152150.0 1949340.0 2055690.0 1931390.0 1697260.0 1676130.0 1489300.0 1681190.0 1685650.0 True False 1539238.0550711919 2223783.0117478515 2223790.1280329796 2315940.1432253574 2177341.0682545877 1579932.4111202867 1595049.1884615992 1600439.128512164 1266883.2512918361 1578070.3738424275 0.9753925303871694 1.4091786073729937 1.4091831168582778 1.4675772269815182 1.3797490304269524 1.0011799456530732 1.0107592252542135 1.0141747510380485 0.8028052945491366 1.0 20.58973011290725 2.713762283942902 6.7239557891060855 0.9731118536947148 1.3451916344633488 0.6267509175505326 0.1395054614984221 0.12270191103380701 22.488252123094245 0.04506165480040197 0.04341190116502195 517.323591449329 -2.713762283942902 0.372079780768634 AVLSAEQLRDEEVHAGLGELLR ddPTM_BT-474_Trastuzumab_2h_R1 5 AVLSAEQLRDEEVHAGLGELLR 22 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PIG2;E9PRS3;E9PNX1;E9PJH8 P50454 SERPINH1 Serpin H1 0 ;;;; 226.16 3.3005e-26 1381938000.0 1213080.0 1938205.0 1814713.0 2143799.0 1921020.0 1757346.0 1957767.0 1586253.0 2222567.0 1858590.0 False True 1206548.9120658576 2002716.9817553333 2070208.8166318422 2415203.733591336 2165650.510222393 1635864.8073675188 1863062.3308137818 1704627.2536895243 1674845.1437219717 1739973.1949810477 0.6934295973904355 1.1510045025591027 1.1897935109594557 1.388069506218826 1.244645904011172 0.940166671582166 1.070741972455544 0.9796859276950479 0.9625695088597124 1.0 20.730633650245426 2.729841798907953 24.630397988338334 0.9952677770106249 1.1516498115360476 0.14669657826372784 0.16912437303819533 1007.0924113188628 2844999.749508705 0.056369376257002425 0.05392918465644473 536.8362066310441 -2.729841798907953 0.15638203452542276 AVNENHK ddPTM_BT-474_Trastuzumab_2h_R1 3 AVNENHK 7 0 Q15257;Q15257-2;A6PVN5;F6WIT2;Q15257-3;Q15257-4;A6PVN9;H0Y6E5;H0Y562 Q15257 PPP2R4 Serine/threonine-protein phosphatase 2A activator 0 ;; 94.262 0.01433 303646000.0 418913.0 346277.0 323511.0 305864.0 265396.0 229238.0 331571.0 335560.0 444340.0 390844.0 False True 416657.61895360996 357802.62061613286 369058.5367919789 344586.35103905736 299192.60747466615 213391.3166282082 315531.64400577627 360601.1911391539 334838.3608509534 365900.0013016163 1.13871991656582 0.9778699626764727 1.0086322368929401 0.9417500678143211 0.8176895501785955 0.5831957252503721 0.8623439269836987 0.985518419940932 0.9151089359383238 1.0 18.481089895245912 3.687367091500261 2.072348882768881 0.8577557370154297 1.04922578178231 0.33400004033306396 0.11464990480661716 0.4265078772011237 3.5673842346888915 0.03630117210869431 0.07111733143644076 4868.185197712725 -3.687367091500261 0.19147004476688034 AVNIPLDPLPGHPLRDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVNIPLDPLPGHPLRDPR 18 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 0 87.85 0.0019142 266790000.0 159120.0 206910.0 185160.0 215990.0 193670.0 180200.0 182320.0 184680.0 207070.0 180490.0 False True 158263.3155998941 213796.87427026383 211228.9185604289 243334.31185404657 218332.72652797552 167743.19814517262 173500.48506996405 198461.75938603826 156040.3730958432 168970.97367473692 0.9366301925000758 1.2652875794029286 1.2500899649607098 1.4400953404130605 1.2921315524183357 0.9927338080448792 1.0268064466737719 1.1745316670073171 0.9234744270114426 1.0 17.36641591187854 2.7405447230640227 24.98900265112404 1.0460654353745982 1.250454269493863 0.38898860057690654 0.13163425752614977 203.1867567876891 2559067.419762638 0.04232529611291045 0.04289412106866338 550.2305796013973 -2.7405447230640227 0.20438883411926478 AVPAPSPGPT(ph)HNSPELGRPPAAGVLAPDMSDKDK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVPAPSPGPTHNSPELGRPPAAGVLAPDMSDKDK 34 2 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 AVPAPS(0.001)PGPT(0.998)HNS(0.001)PELGRPPAAGVLAPDMSDKDK;AVPAPS(0.002)PGPT(0.665)HNS(0.333)PELGRPPAAGVLAPDMSDKDK 236.08 3.0012999999999997e-45 1104820000.0 475760.0 372922.0 346715.0 315671.0 350607.0 465905.0 403937.0 403287.0 743410.0 435443.0 True False 473198.5610219048 385334.48333389027 395529.4582991961 355634.9162335233 395254.7232394993 433698.0839724014 384397.0241208106 433382.32378989167 560206.566683637 407652.6549384918 1.1607886157231155 0.9452519900600942 0.9702609648375161 0.8723969092932384 0.9695870208404183 1.06389122876641 0.9429523381340663 1.063116647321436 1.3742252378269513 1.0 18.636980885391896 1.4583564821324764 6.38976473262342 1.1987156015943081 0.9866592027693364 0.329592674859871 0.11141737006466255 0.15068617076510413 14.753266539265796 0.06278436685295827 0.026251592502792635 28.731379735019033 -1.4583564821324764 -0.21205639882497174 AVPAPSPGPTHNS(ph)PELGRPPAAGVLAPDMSDKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVPAPSPGPTHNSPELGRPPAAGVLAPDMSDKDK 34 2 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 AVPAPS(0.001)PGPT(0.01)HNS(0.989)PELGRPPAAGVLAPDMSDKDK 209.09 7.1785999999999995e-28 552610000.0 245850.0 167150.0 156790.0 158850.0 132230.0 243360.0 249800.0 216830.0 400050.0 219580.0 True False 244526.37091650284 172713.4867056913 178864.6691568895 178960.39371274243 149068.7067113863 226537.09600782028 237716.219671331 233010.95564043024 301463.0378953597 205566.21640810417 1.1895260572926647 0.8401841981797662 0.8701073176430657 0.8705729805205831 0.725161504239806 1.102015204473498 1.156397309951945 1.1335080234090649 1.466500883087105 1.0 17.649243660051823 2.539920336819811 5.570848273313155 1.1852006361132648 0.8926936305216328 0.44639694106279026 0.15400220282013652 0.1945493656758159 12.151754423481623 0.049599468104227405 0.046025257761764325 346.6732539112036 -2.539920336819811 -0.292507005591632 AVPEHAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVPEHAAR 8 0 X6RA56;X6RLR1;O75935-2;O75935 X6RA56 DCTN3 Dynactin subunit 3 0 ; 107.29 0.0040306 74591000.0 162658.0 195652.0 198469.0 188138.0 172699.0 175355.0 200082.0 156397.0 228299.0 196596.0 False True 161782.2674010028 202164.15854586838 226411.71007652723 211956.25150977622 194691.1939828305 163233.12159126948 190403.26927253502 168068.13830787435 172037.7704998691 184049.07496569632 0.8790170090838888 1.0984252900132665 1.2301703234244812 1.151628996501511 1.0578221814976125 0.8868999837227838 1.03452445663214 0.9131702418998816 0.9347385773709218 1.0 17.4897309731631 2.925782821772251 5.658442739119399 0.9530438167607551 1.1011157993709728 0.3349493621807852 0.09152044790878479 0.2470211179721934 14.105038434625257 0.02874215279811678 0.030839513649653705 842.9131356430374 -2.925782821772251 0.1480719826102177 AVPIAVADEGES(ph)ESEDDDLKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVPIAVADEGESESEDDDLKPR 22 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 AVPIAVADEGES(0.998)ES(0.002)EDDDLKPR 195.24 4.6513e-19 204230000.0 126570.0 127310.0 116820.0 114600.0 126570.0 147460.0 121230.0 137650.0 194580.0 156890.0 True False 125888.56118324892 131547.43638947984 133267.24058235736 129108.3482497974 142687.93926083457 137266.43728350243 115365.6417564268 147922.1419725373 146628.36623841783 146877.14587971312 0.8571010855994365 0.8956290347390892 0.9073381688087692 0.8790227198146423 0.97147815888042 0.9345663442828505 0.78545672347764 1.0071147630665427 0.9983062059123955 1.0 17.16425040408827 1.6097798275761144 24.999999999822652 1.0020436604700484 0.8954373904372368 0.5493878793955806 0.04618894333222518 0.145131779635231 1855.6169053297992 0.022476125119544613 0.011666469016604876 40.71738023020803 -1.6097798275761144 -0.10660627003281165 AVPIGT(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 6 AVPIGTPPK 9 0 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 1 AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK 110.88 0.024755000000000003 8833600000.0 7866920.0 6556080.0 5993610.0 5556620.0 5599580.0 8257410.0 7933940.0 7344820.0 10667880.0 8100630.0 True False 7824565.376816987 6774295.159565957 6837458.190607973 6260087.52226692 6312653.321689067 7686594.6825523265 7550145.011605914 7892927.764640243 8038923.91626834 7583640.858101744 1.0317689778858474 0.8932774225890262 0.9016062757380434 0.8254725717369846 0.8324040444168902 1.0135757779643 0.9955831444127465 1.0407834326975125 1.06003489177368 1.0 22.85445921281877 2.654630355073872 6.9959501278395235 1.0244981007070382 0.893189024315971 0.5607717783533036 0.05531316416948575 0.19880536689420228 14.264423447852295 0.01871058983316341 0.017627779205801615 451.47151582925557 -2.654630355073872 -0.13130907639106715 AVPIGT(ph)PPKQMAVPSFTQQILCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVPIGTPPKQMAVPSFTQQILCPK 24 1 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 1 AVPIGT(0.98)PPKQMAVPS(0.016)FT(0.004)QQILCPK 100.93 0.0065161 229170000.0 185660.0 171000.0 167000.0 136900.0 150620.0 233030.0 240000.0 213250.0 307950.0 250010.0 True False 184660.42718876537 176691.63162831726 190512.14840997843 154231.5259633269 169800.56420531636 216921.18459361568 228390.28311096632 229163.79786155844 232059.84881858763 234054.14775567024 0.7889645578147707 0.7549177543854773 0.8139661280809882 0.6589566023172108 0.7254755612473556 0.9267991474351495 0.9758010498894621 0.9791059037363574 0.9914793266592119 1.0 17.836482806218207 2.6254573858566785 3.6896009764293143 0.9811735865091565 0.7474365507849803 0.8933471232925883 0.039412348848424074 0.07703209073086546 1.898392751441923 0.014042263015976723 0.01315509150117729 422.14085542208375 -2.6254573858566785 -0.23373703572417626 AVPKEDIYSGGGGGGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 AVPKEDIYSGGGGGGSR 17 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ;;; 160.76 2.7812e-09 2272550000.0 1110510.0 1566030.0 1420380.0 1476010.0 1477150.0 1492040.0 1614590.0 1450490.0 2174120.0 1615510.0 False True 1104531.1375492609 1618154.361864872 1620357.157835719 1662872.7146612837 1665256.2967460046 1388898.7866843706 1536486.1133672323 1558732.929238979 1638337.257715434 1512406.768692303 0.7303135376101826 1.0699200739917365 1.0713765578004883 1.09948774964759 1.1010637688337395 0.9183367963139155 1.0159212092760928 1.0306307545732103 1.0832649599499058 1.0 20.528414780477753 4.741567829600394 24.965779073390053 1.0429626262784573 0.7303134213276625 0.7590652722208525 0.05290545169183623 138.41616945900924 1149068.8995971319 0.013156334121192815 0.09270544827049608 55152.83352406426 -4.741567829600394 -0.31264920495079473 AVPMAPAPAS(ph)PGSSNDSSAR ddPTM_BT-474_Trastuzumab_2h_R1 6 AVPMAPAPASPGSSNDSSAR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.884)PGS(0.1)S(0.016)NDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.999)PGS(0.001)SNDSSAR;AVPMAPAPAS(0.995)PGS(0.005)S(0.001)NDSSAR 382.07 1.779299999999999e-113 4811910000.0 3477240.0 3840300.0 3607710.0 3540160.0 3646350.0 3989360.0 3758090.0 3150560.0 3873050.0 3696830.0 True False 3458518.9261976844 3968122.063989627 4115644.209222535 3988343.8930192185 4110691.0588902878 3713584.9331433144 3576296.82940205 3385670.785419519 2918588.7237110925 3460895.1443846007 0.9993134093672928 1.1465594588810402 1.1891848893198291 1.152402406496024 1.1877537132438118 1.0730128415386146 1.0333444615346674 0.9782644790359698 0.84330457929261 1.0 21.722713801793173 1.9991392048100833 1.5188239124549694 0.9268930078950487 1.1377828254104017 0.6373131909979861 0.06340358084571034 0.24189330388537664 1.0408048323255081 0.04205954790322582 0.020194513807882713 99.80199087998281 -1.9991392048100833 0.21088981751535296 AVPMIEGYMFEEHEMIR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVPMIEGYMFEEHEMIR 17 0 Q9H3U1;A0A1W2PNX8;Q9H3U1-3;Q9H3U1-2 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A 0 ; 231.23 5.3427e-16 113887000.0 76454.0 98997.0 84433.0 93450.0 96529.0 88893.0 85528.0 79314.0 100196.0 93749.0 False True 76042.38015883799 102292.05530004966 96320.4324952079 105280.7604183557 108821.39597779182 82748.03614161392 81390.68389131133 85232.8134283313 75504.03835761393 87765.85855744295 0.866423247133942 1.1655107917972372 1.0974704068116188 1.199563955150615 1.2399057875855903 0.9428271710856124 0.9273615643837284 0.9711386047975162 0.8602894063663306 1.0 16.421372211462675 2.7055783983275434 21.67456927096993 0.9402074959160883 1.1205092639607543 0.4317069401617527 0.09935364639208068 119.69226639021282 78656.13094917897 0.03181726231046156 0.03000236747745341 507.66637409269185 -2.7055783983275434 0.18030176804466602 AVPPVS(ph)PELR ddPTM_BT-474_Trastuzumab_2h_R1 4 AVPPVSPELR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR 103.08 0.0030016 2667050000.0 678245.0 860820.0 732026.0 744439.0 701531.0 846100.0 782061.0 643291.0 867049.0 813652.0 True False 674593.4042801033 889471.8733233224 835088.8979159457 838684.9010709497 790866.814549992 787611.0985051632 744229.721666856 691296.6409855103 653376.391811357 761724.032757476 0.8856139169431798 1.1677088224502952 1.096314231931065 1.1010351058963859 1.0382589763999146 1.0339848352348486 0.9770332688240256 0.9075421166416199 0.8577599809291883 1.0 19.538908888579865 2.1563686240407756 1.7702839344410375 0.9115526353607659 1.0679177548656733 0.38240986018826706 0.07545818082805439 0.3237988588804728 1.9796983049225914 0.03983649533920102 0.023065274075420115 143.34040395427598 -2.1563686240407756 0.1563651195049074 AVPS(ph)PTTGEEGSVHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVPSPTTGEEGSVHSR 16 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 AVPS(0.992)PT(0.007)TGEEGSVHSR 178.71 1.768e-09 356700000.0 210390.0 234040.0 266560.0 261100.0 258370.0 267540.0 255780.0 219970.0 241370.0 240950.0 True False 209257.28361652663 241829.87991983216 304089.3310189449 294155.23322881374 291271.8880210309 249045.58952141786 243406.94422551233 236385.27838502717 181887.5976922958 225572.3647123263 0.9276725182333112 1.0720722825610272 1.3480788367260845 1.3040393206142586 1.291256969321094 1.104060729420588 1.0790636722540483 1.0479354538242778 0.8063381253473052 1.0 17.783230805761235 1.7731489168193177 1.4626670365933507 0.9160482250655889 1.1899146779600793 0.39344732843135566 0.12787656574753364 0.4163118726336128 1.7013970283422757 0.10572910299226058 0.04226016146981563 59.31286697685835 -1.7731489168193177 0.2738664528944904 AVPVES(ph)PVQKV ddPTM_BT-474_Trastuzumab_2h_R1 6 AVPVESPVQKV 11 1 Q8TB61-5;Q8TB61-4;Q8TB61-3;Q8TB61-2;Q8TB61 Q8TB61-5 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 1 AVPVES(1)PVQKV;AVPVES(1)PVQKV;AVPVES(1)PVQKV;AVPVES(1)PVQKV;AVPVES(1)PVQKV;AVPVES(1)PVQKV 171.26 1.5621e-05 2673980000.0 3544170.0 3953910.0 3674790.0 3297600.0 4149070.0 4373100.0 3919710.0 3757310.0 5218340.0 3990330.0 True False 3525088.582514303 4085513.504160928 4192168.4901527218 3715075.821889455 4677429.471035401 4070797.8901701146 3730098.6525536957 4037699.5514335907 3932350.029173528 3735663.72310661 0.9436311305833516 1.0936513045567655 1.1222017828377975 0.994488823742402 1.2521013179274099 1.0897120811465342 0.9985102859985785 1.0808519852733973 1.052650966640903 1.0 21.832933161726757 -0.4535226055711026 7.781074659108711 1.0000000001585134 1.0732069066301706 0.06244473829331376 0.08008813883598045 0.0 0.0 0.07428708815102601 0.01750963459539778 0.35194710276098823 0.4535226055711026 0.07320690647165717 AVQALCAVYEHWVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVQALCAVYEHWVPR 15 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 ; 154.6 2.4502000000000003e-06 1147550000.0 529460.0 686160.0 691720.0 765780.0 767100.0 677920.0 641430.0 549920.0 655810.0 684620.0 False True 526609.4461885361 708998.4208075202 789108.1634619787 862727.6694828081 864785.6380420809 631056.9860520284 610401.5803994464 590957.8228371778 494194.41290377633 640926.9654673295 0.8216372138509741 1.1062078193114508 1.231198258114485 1.3460623689842 1.3492732942068146 0.9846004616015736 0.9523730678960814 0.9220361362176158 0.7710619766847169 1.0 19.28980044350984 2.5429198760550467 6.215656031763787 0.9150046726210105 1.1804785239234536 0.40850071860289827 0.14909720406704613 0.23966668723395138 17.79490664363541 0.05213990736943842 0.048650782382856465 349.0759077547854 -2.5429198760550467 0.26547385130244316 AVQCTSDYPEHVCEVLLTMER ddPTM_BT-474_Trastuzumab_2h_R1 1 AVQCTSDYPEHVCEVLLTMER 21 0 A0A499FI31;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 184.02 4.1043e-17 176360000.0 140450.0 169990.0 136060.0 164830.0 137920.0 149240.0 134970.0 131620.0 182030.0 161430.0 False True 139693.8328054621 175648.01438887493 155216.06534527952 185697.4610995993 155483.29448411404 138923.39007317196 128440.98546452982 141442.15275281755 137171.14557703352 151127.39919282377 0.9243448478010691 1.1622512881649294 1.0270544333740503 1.2287478120540374 1.0288226709025317 0.9192468792235305 0.849885501573753 0.9359133652022371 0.9076523933427622 1.0 17.205405717309816 2.8512592966237515 3.9160123601196317 0.9140079255467276 1.0905672708800802 0.4613134265177392 0.08290813050153345 0.1869132412247652 5.048401456776484 0.024549849595931653 0.026178251873817292 710.001549669827 -2.8512592966237515 0.1765593453333526 AVQDLCGWR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVQDLCGWR 9 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 85.86200000000002 0.033798 357760000.0 143740.0 167870.0 159270.0 133210.0 138110.0 179580.0 136670.0 103060.0 283030.0 182000.0 False True 142966.11981101526 173457.45147044226 181693.83160034317 150074.3723416711 155697.48985789588 167166.0572858498 130058.74996989922 110750.86052807613 213281.0489076953 170384.6041819605 0.8390788621860228 1.018034770824717 1.0663747025306647 0.8807977285400781 0.9138002262905183 0.9811101072684156 0.7633245421106494 0.6500050932407067 1.2517624460947423 1.0 17.378435455107304 3.0766489669566437 1.439182748991497 0.8717021154804807 0.9696720159868255 0.0 0.16321348613233336 1.3453406493644917 5.793719170141775 0.06208205055184923 0.07935484506496336 1193.0234135609862 -3.0766489669566437 0.0979699005063448 AVQELVHPVVDR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVQELVHPVVDR 12 0 A5YKK6-3;A5YKK6-2;A5YKK6;A5YKK6-4;H3BNB1 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 ;; 111.83 0.00029828 733180000.0 1066560.0 1299810.0 1123620.0 1138530.0 1168860.0 1373210.0 1312370.0 1141850.0 1489760.0 1355130.0 False True 1060817.7594659566 1343073.3900982635 1281815.9293198793 1282667.7812638893 1317707.3926239961 1278283.224888637 1248885.649359745 1227060.6451968136 1122628.6097612574 1268644.443214837 0.8361820880070758 1.0586680904027121 1.0103823306644253 1.0110537969279367 1.0386735224921098 1.0075977014090525 0.9844252706416134 0.9672218656374303 0.8849040531139167 1.0 20.274856358056862 -0.25474034053985295 5.811241903773734 0.9999999804037889 0.9838442835693603 0.0024956546075795005 0.06517947040127973 7411027.464882132 2550582.709869822 0.060016675787770465 0.014556181944377142 0.5562367251355615 0.25474034053985295 -0.016155696834428634 AVQGMLDFDYVCSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVQGMLDFDYVCSR 14 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 159.64 1.1355e-05 46520000.0 32920.0 46989.0 41544.0 43900.0 35925.0 43470.0 41688.0 33561.0 46575.0 43987.0 False True 32742.762377755833 48553.00045954967 47393.0340930787 49457.73549883161 40499.83580584249 40465.021217373214 39671.392176374895 36065.49223930491 35097.21532302552 41179.71200083465 0.7951187802647136 1.1790514819182218 1.150883087577643 1.2010218890756006 0.9834900206446715 0.9826445900484455 0.9633722590282034 0.8758072965292696 0.8522938509699669 1.0 15.329646119757097 2.6491569960945642 1.6205305296019652 0.9085575310095542 1.0886814446150344 0.2523158336941742 0.11482479364360748 0.45607789902500145 2.40335627512033 0.047682270564591095 0.04295903066897496 445.81738085774384 -2.6491569960945642 0.1801239136054802 AVQGVTVDPYFHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVQGVTVDPYFHDR 14 0 Q9NXC5;Q9NXC5-2 Q9NXC5 MIOS WD repeat-containing protein mio 0 85.619 0.007664399999999998 355270000.0 138540.0 163310.0 163040.0 158910.0 166270.0 183830.0 153130.0 151690.0 179250.0 170130.0 False True 137794.11603324115 168745.67462702008 185994.61483091544 179027.9897065906 187443.49894049915 171122.2647892736 145722.51688659287 163009.87806621267 135076.23932694198 159272.15774437878 0.8651487992922877 1.0594800561303732 1.1677785839344528 1.1240382012901378 1.1768754915804776 1.0744016230627922 0.9149277497732392 1.0234675060272158 0.8480844438846014 1.0 17.281134566819386 2.2989234315778324 7.142891428689872 0.9555799222205815 1.0884905103137619 0.3199958767457185 0.09274096229182975 0.2707691265298766 26.252044818156264 0.03317108823483387 0.027549649521137056 199.03224036488604 -2.2989234315778324 0.13291058809318035 AVQPHISPLTINIPDTMAHLISPLPS(ph)PTGTISAANSCPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVQPHISPLTINIPDTMAHLISPLPSPTGTISAANSCPSSPR 42 0 Q01167;Q01167-2;E9PPI7;Q01167-3 Q01167 FOXK2 Forkhead box protein K2 2 AVQPHISPLTINIPDTMAHLIS(0.001)PLPS(0.809)PT(0.156)GT(0.044)IS(0.043)AANS(0.109)CPS(0.463)S(0.377)PR;AVQPHISPLTINIPDTMAHLISPLPS(0.873)PT(0.075)GT(0.026)IS(0.018)AANS(0.011)CPS(0.626)S(0.37)PR 231.65 1.7475999999999994e-45 219280000.0 24784.7 60886.0 69884.0 74522.0 82575.0 77630.0 77853.0 57510.0 54976.0 67465.0 True False 24651.26192903903 62912.553703635785 79723.0597573828 83956.47755908714 93090.43678962954 72263.62082136379 74086.9529626587 61801.688229862775 41427.9014406581 63159.32594030762 0.3903028026666581 0.9960928614579411 1.262253175924165 1.329280772224122 1.4738985162319505 1.1441480691174681 1.1730168405007815 0.9785045566868785 0.6559269090333854 1.0 15.946708153854555 1.5179653099291812 4.25705911868129 0.8222973710400651 1.1334870443168708 0.1316688831963484 0.2836868531696617 0.3307123783177484 13.06294352778358 0.1855862892591609 0.07650958346832204 32.958338504671275 -1.5179653099291812 0.3111896732768057 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLR ddPTM_BT-474_Trastuzumab_2h_R1 8 AVQQHQHGYDSDEEVDSELGTWEHQLR 27 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGY(0.005)DS(0.995)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR 425.15 6.034999999999996e-187 14111610000.0 1275745.0 1547010.0 1407759.0 1590285.0 1640208.0 1594386.1 1549301.0 878700.5 1650013.0 1512332.2 True False 1268876.5306685946 1598501.2926627079 1605959.230739419 1791614.9179444057 1849078.7665255177 1484169.9416881741 1474355.3917254303 944273.5932607302 1243389.4051914387 1415813.8642232623 0.8962170541850996 1.1290335071974102 1.1343011050541405 1.265431115782521 1.3060182650068561 1.0482804125543812 1.0413483219662387 0.6669475537158788 0.8782153054233451 1.0 20.43320017739097 1.9538423627721468 4.548915472279326 0.8164525085551998 1.1388311022952091 0.47211742892322905 0.131177716988191 0.16254134533496445 7.216408051038709 0.060595426736079906 0.03663241659515569 89.91711473235873 -1.9538423627721468 0.3223785937400093 AVQTLAGSQPTSDKPSQRPS(ph)ESTNCSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVQTLAGSQPTSDKPSQRPSESTNCSPTR 29 2 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 AVQTLAGSQPTSDKPS(0.085)QRPS(0.217)ES(0.217)T(0.217)NCS(0.217)PT(0.046)R 94.72 0.00064118 249230000.0 34031.0 26142.0 36736.0 25546.0 28058.0 42589.0 28922.0 30840.0 48941.0 39004.0 True False 33847.78087719953 27012.120666827283 41908.10948496388 28780.120980709624 31631.019987204676 39644.9226737223 27522.932367230707 33141.43740234686 36880.14632580123 36514.73132699558 0.9269623422417366 0.7397595349923073 1.147704172041407 0.7881783580160782 0.8662536690724507 1.0857240689708307 0.7537487300880898 0.9076182734458512 1.0100073308915598 1.0 15.15619099490538 1.252077583650958 8.636631187164527 1.0052600656577895 0.8988928600327943 0.09701061963103819 0.125470382393509 0.3200804008168992 162.57571820055588 0.08568523681003348 0.028794673190768113 17.868067467851912 -1.252077583650958 -0.10636720562499513 AVQTRPVLQPQPGS(ph)LNSSIWDGSEVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVQTRPVLQPQPGSLNSSIWDGSEVLR 27 1 Q86TB9-4;Q86TB9 Q86TB9-4 PATL1 Protein PAT1 homolog 1 1 AVQTRPVLQPQPGS(0.962)LNS(0.022)S(0.016)IWDGSEVLR 86.081 0.005019 323430000.0 105940.0 75938.0 77440.0 86139.0 95545.0 100420.0 109220.0 97408.0 123500.0 88586.0 True False 105369.63081104062 78465.5504245097 88342.87887945356 97044.18856796944 107712.08941041671 93478.20176325334 103936.61133908224 104677.07958780153 93065.07981521533 82932.36563770974 1.2705489587906866 0.946139059475123 1.0652400688216186 1.1701606221135332 1.2987943679426348 1.1271618872131675 1.2532695834715437 1.2621981633212254 1.1221804551165269 1.0 16.339647625207213 3.638950296621924 4.792722894320008 1.200234438538546 1.0797167029922754 0.07699758274249535 0.1107325201905295 0.34960947396969794 12.959670953215621 0.028036533004773895 0.04436636545492638 4354.620338336057 -3.638950296621924 -0.12051773554627054 AVS(ph)EEQQPALK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVSEEQQPALK 11 0 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 AVS(1)EEQQPALK;AVS(1)EEQQPALK;AVS(1)EEQQPALK;AVS(1)EEQQPALK 211.83 8.395799999999999e-09 2163910000.0 3081470.0 2199020.0 1921270.0 2411580.0 2192550.0 2594850.0 1924220.0 2139960.0 3695390.0 3060980.0 True False 3064879.7079035034 2272213.0513643385 2191768.1160217933 2716885.7807351323 2471758.246237997 2415474.1271198746 1831138.127365768 2299654.6816966976 2784710.6501890603 2865625.6357631753 1.0695324852114756 0.792920409074719 0.764848027833224 0.9480951547990913 0.8625544856209791 0.8429133578980508 0.6390011676727961 0.802496548396578 0.971763588179736 1.0 21.450418718105944 2.703727070047674 4.270423748027092 0.8175647621794826 0.8793628498035911 0.0 0.12297646336706221 0.7568231840590435 32.041122434247484 0.04035547317881548 0.03912121481154408 505.50687917172223 -2.703727070047674 0.061798087624108544 AVS(ph)LDSPVSVGSSPPVK ddPTM_BT-474_Trastuzumab_2h_R1 5 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 AVS(0.838)LDS(0.162)PVSVGSSPPVK;AVS(0.996)LDS(0.004)PVSVGSSPPVK;AVS(0.99)LDS(0.01)PVSVGSSPPVK;AVS(0.982)LDS(0.018)PVSVGSSPPVK;AVS(1)LDSPVSVGSSPPVK 323.91 7.0093e-59 2277740000.0 3411660.0 2821290.0 2402470.0 2614950.0 2391240.0 2912790.0 2321260.0 2410680.0 3635880.0 2978810.0 True False 3393292.001631058 2915194.932144177 2740716.893356416 2946002.401883135 2695750.240010096 2711435.6832701312 2208971.7857256723 2590577.182785001 2739866.0922959135 2788699.7955124495 1.2168007496151119 1.0453598974099982 0.9827938087013715 1.056407149533921 0.9666692142151956 0.9722938581031021 0.7921153037986841 0.9289552023325475 0.9824887199062736 1.0 21.411161205434222 7.999999979836131 0.5012871942836692 0.9254336154002549 9.995354439554195 0.6206028796253753 0.062412595427879275 68.84768178637448 0.7282553199609549 0.03366088104233808 657.9508071423534 99999995.35709773 -7.999999979836131 9.06992082415394 AVS(ph)MDNSNK ddPTM_BT-474_Trastuzumab_2h_R1 3 AVSMDNSNK 9 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 AVS(1)MDNSNK;AVS(1)MDNSNK;AVS(1)MDNSNK 174.42 5.7364e-05 3309630000.0 4144500.0 2421800.0 1792560.0 1901200.0 1742940.0 1930140.0 1706970.0 2036780.0 3399150.0 2633580.0 True False 4122186.4724972346 2502408.1489909845 2044936.866789169 2141891.7250655736 1964893.0777852493 1796713.9648608428 1624397.3398413598 2188774.8661592747 2561475.02877643 2465502.6696787244 1.6719456535954147 1.0149687444131097 0.8294198550008632 0.8687444355291166 0.7969543501006597 0.7287414396087308 0.6588503674396882 0.8877600876597268 1.0389260820026658 1.0 21.23345038433322 4.7623032444820526 2.2984961758903966 0.8336553006616022 1.9115802614531716 0.8363188860898858 0.1084076834823048 0.23885311815440458 1.4135690077852632 0.027791262422042145 0.5307299867489227 57849.984174540536 -4.7623032444820526 1.0779249607915693 AVS(ph)MDNSNKYTK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSMDNSNKYTK 12 1 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 AVS(0.999)MDNS(0.001)NKYTK;AVS(1)MDNSNKYTK 104.41 0.0012963 974640000.0 1119180.0 878500.0 617380.0 719340.0 711360.0 747330.0 645820.0 769640.0 1675600.0 1022440.0 True False 1113154.4592325878 907740.3414355365 704301.7376368415 810408.3702444078 801947.4794389461 695668.8361255935 614579.219328019 827074.4449527313 1262670.8318896738 957187.0038450775 1.1629435572787552 0.9483416905882437 0.7358036985538032 0.8466562615131097 0.8378169325507713 0.7267846652023587 0.6420680774594906 0.8640677752939852 1.3191474882310872 1.0 19.86844128333209 1.3222012092529303 7.89257195041868 1.157198793025782 0.831387822185666 0.4039367406476335 0.15206818915575893 0.20954411834926703 16.760566461184247 0.10407261514651393 0.03780481845058164 20.999125507671103 -1.3222012092529303 -0.3258109708401161 AVS(ph)PAPQSSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSPAPQSSSR 11 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 AVS(0.997)PAPQS(0.001)S(0.001)SR 64.313 0.072475 468560000.0 702240.0 720620.0 702490.0 726980.0 793240.0 834820.0 699340.0 730630.0 872230.0 759940.0 True False 698459.2178661993 744605.4010760118 801394.4858474592 819015.5934610608 894254.4120981619 777110.8583549008 665510.2524617643 785153.3206639657 657280.6037832007 711439.9785826337 0.9817542433554335 1.0466173162765635 1.1264400511256585 1.151208279147799 1.2569639590394404 1.0923069854790843 0.9354411791527756 1.1036114701175317 0.9238735853622789 1.0 19.440382521766477 2.4272125821751445 10.400891811121454 1.008794366104145 1.1181007039093036 0.3311180652792469 0.08112306451318509 0.6421523096836944 130.02541896460943 0.029553259194184438 0.024725431327420572 267.43151349649474 -2.4272125821751445 0.10930633780515864 AVS(ph)PAVPFSR ddPTM_BT-474_Trastuzumab_2h_R1 6 AVSPAVPFSR 10 0 I3L2J0 I3L2J0 CIC 1 AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR 134.75 0.00017023 3389190000.0 1883680.0 2203099.0 1880623.0 2197896.0 2178205.0 2106469.0 1822338.0 1902407.0 2182106.0 1964215.0 True False 1873538.4761765236 2276427.818413531 2145398.3717318526 2476149.4082446457 2455586.495517472 1960853.756124659 1734184.5489328033 2044374.270567008 1644355.2150223495 1838857.1170509346 1.0188602794659811 1.237957967100973 1.1667020519639575 1.3465697716719656 1.335387329851716 1.0663437294515716 0.9430773782543802 1.1117635250778328 0.8942267453925309 1.0 20.810377953081392 2.551574873384683 6.003567294261492 1.0065247488278901 1.2251386596633715 0.5476218956517025 0.10044958050174578 0.18582973461350216 11.71101698521196 0.033373698113967044 0.031171411671568967 356.1023776271034 -2.551574873384683 0.21861391083548143 AVS(ph)PLDPSK ddPTM_BT-474_Trastuzumab_2h_R1 5 AVSPLDPSK 9 0 Q14865;Q14865-2 Q14865 ARID5B AT-rich interactive domain-containing protein 5B 1 AVS(1)PLDPSK;AVS(1)PLDPSK;AVS(1)PLDPSK;AVS(0.999)PLDPS(0.001)K;AVS(1)PLDPSK 110.54 0.0023815 591600000.0 3610180.0 3502320.0 3031700.0 2833980.0 2729570.0 3797390.0 3607270.0 3406760.0 4622510.0 3610590.0 True False 3590743.192008709 3618892.6040028525 3458537.007991212 3192761.5774254804 3077164.560071077 3534885.367394548 3432772.5689904024 3660989.730376754 3483354.3489605705 3380159.0550183807 1.0623000674118228 1.0706279039236435 1.0231876523255516 0.9445595681911243 0.9103608765103937 1.0457748614363136 1.0155653959223927 1.0830820889749067 1.0305297153957829 1.0 21.688659704141486 -0.07100011555039443 7.960760847226783 1.0000000026116178 1.0217646812672836 0.013715922710253015 0.051822547512862964 0.0 0.0 0.05523639848863015 0.013019343979877586 0.8491802490994671 0.07100011555039443 0.02176467865566578 AVS(ph)PPHLDGPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 AVSPPHLDGPPSPR 14 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;H3BVD2;H3BRN3;P29590-12;P29590-13;P29590-11;H3BT57;H3BUJ5 P29590-2;P29590-12 PML Protein PML 2 AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR 141.64 5.0809e-06 4742750000.0 1853620.0 2161770.0 1918180.0 1969990.0 1872270.0 1973410.0 1932530.0 1696440.0 2059860.0 1940510.0 True False 1843640.3158765445 2233723.2076324397 2188243.0708805565 2219390.5320123746 2110692.486686282 1836992.8116074656 1839046.1409184833 1823036.9671477717 1552235.103709875 1816664.9904458069 1.0148488166902572 1.2295735423867487 1.204538581625644 1.2216839888942537 1.1618501472681109 1.0111896366520887 1.0123199107102208 1.0035075133475222 0.854442129877209 1.0 20.79286096733113 2.6747907090126986 2.6664039251068874 0.9744512571134945 1.1779375050230312 0.649499877458491 0.07020071638299856 0.17598338456174084 2.467271830614504 0.02443498994924242 0.023404241317770302 472.9232974257187 -2.6747907090126986 0.20348624790953673 AVS(ph)PSNPK ddPTM_BT-474_Trastuzumab_2h_R1 5 AVSPSNPK 8 0 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 1 AVS(0.989)PS(0.011)NPK;AVS(0.984)PS(0.016)NPK;AVS(0.992)PS(0.008)NPK;AVS(0.982)PS(0.018)NPK;AVS(0.933)PS(0.067)NPK 141.29 0.00066697 9204920000.0 8137880.0 7769510.0 7063060.0 6958620.0 6664160.0 7796130.0 8895730.0 9095290.0 11747400.0 8849630.0 True False 8094066.55828346 8028113.443582021 8057477.4547819365 7839580.578516608 7512801.274429048 7257201.883216008 8465409.554911315 9774026.724746801 8852410.677095218 8284839.03685058 0.9769733029551241 0.9690126033678318 0.9725569101515008 0.9462562330597514 0.9068131850253767 0.8759617236902624 1.0217952958720822 1.1797485360032203 1.068507262207522 1.0 22.982042237441597 1.9991043772226906 8.595923803161387 1.1023875580372702 0.943004029184643 0.6039867947468924 0.051124423269485214 0.06191281546472327 53.80835311215133 0.019968894211352485 0.013970652735646103 99.79398773157286 -1.9991043772226906 -0.1593835288526272 AVS(ph)VEAAER ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSVEAAER 9 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 AVS(1)VEAAER;AVS(1)VEAAER 190.7 3.8549e-05 1709710000.0 1839770.0 1854690.0 1368350.0 1860780.0 1819940.0 1545140.0 1205490.0 1187870.0 1735810.0 1352740.0 True False 1829864.882737662 1916422.2354662174 1561001.7860885889 2096354.557209926 2051698.5713704927 1438328.1086683257 1147175.8432809967 1276514.8912816388 1308042.884162339 1266406.9750610196 1.4449264089448757 1.513275173941519 1.2326225430125846 1.655356136291745 1.6200941812339869 1.135755043199302 0.9058508566929853 1.0079815702374286 1.0328771950259616 1.0 20.272309675946516 2.572480996904676 4.4151871867491455 0.989180312314613 1.486840165929129 0.8240231072887393 0.11164928543770529 0.09348340016005952 3.1250794575335994 0.03852650209029991 0.035728059005246546 373.6637749010867 -2.572480996904676 0.49765985361451603 AVS(ph)VEAAERDWEEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSVEAAERDWEEKR 15 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 AVS(1)VEAAERDWEEKR;AVS(1)VEAAERDWEEKR 169.43 6.2494e-07 240052000.0 420870.0 430110.0 315520.0 497090.0 528600.0 490740.0 408790.0 383380.0 714000.0 504210.0 True False 418604.0826830529 444425.9513430145 359942.4734509964 560021.5430322137 595914.0767423343 456816.2988777022 389015.2659705501 411989.76236419415 538044.2671098282 472030.8861241014 0.886815026279865 0.9415187955013831 0.7625400880152662 1.1864086853100089 1.2624472132225322 0.9677678141544341 0.8241309571176542 0.8728025527038884 1.1398497067167999 1.0 18.848521736143063 3.7545868509840363 24.817603668948625 1.015716882019248 0.8714140732892882 0.24603652311494495 0.13494508136938388 1433.8307753144343 2220367.48651573 0.03954408152136943 0.0709989773697403 5683.120322489533 -3.7545868509840363 -0.1443028087299597 AVSDWIDEQEK ddPTM_BT-474_Trastuzumab_2h_R1 5 AVSDWIDEQEK 11 0 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6;K7EQ75;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;; 247.08 1.0367e-15 943310000.0 1359940.0 1286140.0 1105170.0 1069841.0 1170540.0 1450250.0 1355830.0 1326560.0 1780030.0 1400120.0 False True 1352618.2341435389 1328948.3924119533 1260768.329690156 1205282.7609067312 1319601.3306658566 1349997.6310212894 1290243.3231264243 1425554.6433351887 1341365.457679981 1310763.1428969596 1.0319318493759857 1.013873787658388 0.9618582400048964 0.919527503834825 1.006742780201588 1.0299325536706934 0.9843451352124658 1.0875760819643776 1.0233469448304644 1.0 20.321975581016478 2.518448135781088 1.6164321030845468 1.0381126788363952 0.9831829414769737 0.17656707976566077 0.03870620066967934 0.5374722569161754 2.841384526593075 0.0183455688228402 0.014739913734764432 329.9500023422315 -2.518448135781088 -0.05492973735942153 AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSETPAVPPVSEDEDDDDDDATPPPVIAPRPEHTK 36 1 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK 163.62 8.9762e-18 1110900000.0 713400.0 682870.0 644950.0 604080.0 598380.0 804220.0 771920.0 709220.0 1023600.0 856940.0 True False 709559.133666191 705598.9151463676 735753.3539941057 680556.4660622821 674580.1461238699 748626.1643302485 734579.2805792388 762145.5977461883 771347.4955372831 802249.3555367558 0.8844620799869024 0.879525686467242 0.9171130508441979 0.848310392978685 0.8408609386448593 0.9331589476059723 0.9156495739255017 0.9500108569563942 0.9614809787178984 1.0 19.613691199998055 1.7158774396946175 0.8650570047011913 0.9931743072272726 0.8771164212448174 0.7410874792934208 0.024425765770596453 0.29450560962584693 0.42065094881045945 0.022611490208784647 0.009674142540583663 51.98492714908729 -1.7158774396946175 -0.11605788598245526 AVSEVARPAS(ph)TPPIMASAIKDEDDEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSEVARPASTPPIMASAIKDEDDEDR 27 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WTE6 A0A087X165;A0A087WTE6 SRCIN1 SRC kinase signaling inhibitor 1 1 AVSEVARPAS(0.938)T(0.062)PPIMASAIKDEDDEDR 178.85 1.0467e-17 432400000.0 422220.0 202230.0 182900.0 208780.0 140720.0 238380.0 200070.0 246580.0 398510.0 263160.0 True False 419946.81443305244 208961.10329938322 208650.7302047012 235211.52659330424 158639.8578872137 221901.3516861613 190391.84975837954 264981.051707869 300302.5502604166 246364.90349738896 1.7045723983875127 0.8481772376380625 0.8469174271282213 0.9547282232746965 0.6439223105043248 0.9007019609370337 0.7728042714509348 1.0755633125749882 1.2189339715086458 1.0 17.910437222528635 4.7413431294976105 24.834764511250523 0.911165600987227 1.7045727124443613 0.7072719855944448 0.15175801156133173 131.35667830640253 1172329.0247768522 0.037391996462881 0.2587647198337236 55124.30531922575 -4.7413431294976105 0.7934071114571343 AVSEVARPAS(ph)TPPIMASAIKDEDDEDRIIAELEVFER ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSEVARPASTPPIMASAIKDEDDEDRIIAELEVFER 37 3 A0A087WTE6 A0A087WTE6 SRCIN1 1 AVSEVARPAS(0.972)T(0.028)PPIMASAIKDEDDEDRIIAELEVFER;AVSEVARPAS(0.969)T(0.031)PPIMASAIKDEDDEDRIIAELEVFER 317.68 4.672799999999998e-110 329421000.0 107591.0 63142.0 58526.0 74821.0 52629.0 78336.0 73436.0 80261.0 156462.0 98597.0 True False 107011.74201048377 65243.643299854935 66765.95208288865 84293.33092843012 59330.99119347762 72920.81670310898 69883.62012723726 86250.48337709987 117904.03658338649 92304.4550468614 1.1593345300197668 0.7068309245391443 0.7233231814108291 0.9132097782889875 0.6427749469227274 0.7900032199538833 0.7570991030905121 0.934413006753704 1.2773385263314605 1.0 16.494112660344726 1.4624411305417355 4.3614168289479265 1.1370360760432927 0.8041307834089644 0.4252664270508252 0.14919515240863176 0.1643965987544669 6.203196717361097 0.09440689335432764 0.03615367120044014 29.002880323857866 -1.4624411305417355 -0.33290529263432833 AVSGGS(ph)PERR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSGGSPERR 10 1 Q96HB5-2;Q96HB5;Q96HB5-5;Q96HB5-3;Q96HB5-4 Q96HB5-2 CCDC120 Coiled-coil domain-containing protein 120 1 AVS(0.011)GGS(0.989)PERR 77.64399999999998 0.019834 216200000.0 59380.0 77961.0 72871.0 79745.0 77523.0 77140.0 77754.0 64438.0 74921.0 78257.0 True False 59060.30467773821 80555.88475658021 83130.6033939134 89840.70882356085 87395.09453517961 71807.49336802789 73992.74197087545 69246.69076953398 56457.72343996554 73262.5712608115 0.8061456711297527 1.0995503347787896 1.1346940458583163 1.226283861970008 1.192902365166204 0.9801388639827615 1.0099664903578742 0.9451851003566177 0.7706216485219793 1.0 16.16078871505026 2.032118505728218 1.5339391435616303 0.8937564039428039 1.0956799017848131 0.28209082438135125 0.12202881454231174 0.4961300710421552 2.186980074332776 0.08130236929429524 0.040239930833225857 107.67589882586996 -2.032118505728218 0.20192349784200925 AVSILPLLGHGVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSILPLLGHGVPR 14 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 0 88.075 0.007540100000000002 0.0 89188.0 117370.0 83184.0 100300.0 99286.0 81841.0 98893.0 85130.0 105070.0 99968.0 False True 88707.82171771824 121276.58949833678 94895.58415171038 112997.96971600929 111929.48358577257 76183.52430299146 94109.16778205326 91482.83288138085 79176.9063658679 93587.95665308916 0.947855096853321 1.2958567943510462 1.013972177034149 1.2073986200475448 1.1959817009433338 0.8140312816678724 1.0055692115481922 0.9775064672101822 0.8460159746767418 1.0 16.5140352683885 2.7505616808559634 24.97908243772184 0.9378604858773787 1.1389122687861613 0.4649829428000296 0.10884780910068276 646.1582210789037 1344916.7201452006 0.03118212998713686 0.03284116478761365 563.0690818381527 -2.7505616808559634 0.20105178290878256 AVSLDSPVSVGS(ph)SPPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 AVSLDSPVSVGS(0.925)S(0.075)PPVK 311.24 4.2018e-58 848030000.0 211700.0 222250.0 177900.0 168010.0 195240.0 233740.0 222240.0 209980.0 268150.0 228220.0 True False 210560.23072208138 229647.45689703806 202946.77366548014 189280.04877354673 220102.65672185645 217582.10396477612 211489.402160755 225649.77385683497 202068.02552591098 213654.80421102792 0.9855160126149561 1.0748527642290417 0.9498816299259463 0.8859152476000206 1.0301788323208494 1.018381518582045 0.9898649503423563 1.0561418204009096 0.9457686957805422 1.0 17.704922232052606 AVSLFSLNDPALSPDIPPAHS(ph)PVHSHLSLER ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSLFSLNDPALSPDIPPAHSPVHSHLSLER 31 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 AVSLFSLNDPALSPDIPPAHS(0.892)PVHS(0.045)HLS(0.064)LER;AVSLFSLNDPALSPDIPPAHS(0.778)PVHS(0.086)HLS(0.135)LER 233.11 1.8874000000000002e-45 838560000.0 103291.0 182614.0 179244.0 179823.0 189611.0 174006.0 170767.0 68728.2 176179.0 135906.0 True False 102734.89273270886 188692.19659750606 204479.9971832224 202588.5733623323 213756.83693755348 161977.3747860648 162506.34781671007 73857.0472787282 132762.0461276502 127232.3627250195 0.807458814191357 1.483051894629328 1.6071382532222096 1.592272351337027 1.6800508326606707 1.2730831316568243 1.277240666888552 0.5804894737225896 1.0434612962001004 1.0 16.9571061545279 1.9266270742782792 5.07804084792684 0.8412493320986117 1.429656694002897 0.4553395037071831 0.25904604991563923 0.1798008324778602 8.361256940030222 0.11815193115004449 0.07078336449323346 84.45533215030976 -1.9266270742782792 0.5884073619042852 AVSLFSLNDPALSPDIPPAHSPVHS(ph)HLSLER ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSLFSLNDPALSPDIPPAHSPVHSHLSLER 31 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 AVSLFSLNDPALSPDIPPAHS(0.253)PVHS(0.374)HLS(0.374)LER;AVSLFSLNDPALSPDIPPAHS(0.294)PVHS(0.353)HLS(0.353)LER 199.29 1.9146e-25 518190000.0 57728.5 91727.0 90539.0 103354.0 92599.0 96993.0 102227.1 24711.9 86090.0 72903.0 True False 57417.696170239295 94780.07774485766 103286.10422090434 116438.60580287554 104390.93377272678 90288.102206963 97281.98462755453 26556.02746248559 64874.27304689783 68250.26812460153 0.8412816205412457 1.3887136321841522 1.5133435671247388 1.7060534559409888 1.5295314823107335 1.3228973993498159 1.4253714644747046 0.3890977748835127 0.9505350649825978 1.0 16.0585470932929 1.7568094300088084 24.999983312522655 0.731512833817832 1.4093126733812855 0.5308161590486817 0.26104470821372344 5.089593026113196 6979.576667743083 0.12015075467697672 0.06663054354263515 57.122792478749844 -1.7568094300088084 0.6777998395634535 AVSLFSLNDPALSPDIPPAHSPVHSHLS(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 1 AVSLFSLNDPALSPDIPPAHSPVHSHLSLER 31 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 AVSLFSLNDPALSPDIPPAHS(0.24)PVHS(0.207)HLS(0.553)LER 249.5 2.1376999999999998e-46 353870000.0 72988.0 141630.0 142440.0 188620.0 156590.0 148910.0 141410.0 43038.0 154070.0 91666.0 True False 72595.04071772915 146344.068932857 162494.3138893254 212499.27266035552 176530.80831835425 138616.20219643533 134569.45806134056 46249.7141025358 116101.51293222867 85815.79740078912 0.8459402920733288 1.7053278459836496 1.8935244886255778 2.476225579632049 2.0570898793131875 1.6152760493391476 1.5681198816210398 0.5389417275531896 1.3529153891094772 1.0 16.388955630233752 1.9289813199246595 5.254599788776506 0.9319593392534596 1.799302947688393 0.4116188434546957 0.42715616796878647 0.2073055124845717 10.501703240852496 0.1999156436045838 0.12046347856038764 84.91439504780494 -1.9289813199246595 0.8673436084349334 AVSPPHLDGPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 AVSPPHLDGPPSPR 14 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;H3BVD2;H3BRN3;P29590-12;P29590-13;P29590-11;H3BT57;H3BUJ5 P29590-2;P29590-12 PML Protein PML 1 AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR 211.12 2.7596e-09 2805190000.0 791640.0 952630.0 819600.0 864480.0 835230.0 838550.0 831520.0 739030.0 882530.0 838740.0 True False 787377.8981994725 984337.7136730035 934992.5559090918 973923.0793628675 941591.5897039331 780583.0122343752 791296.2008851283 794180.1713183017 665042.30679613 785210.8951185588 1.0027597720489938 1.2535966067108362 1.1907534163390812 1.2403331199522074 1.199157570988317 0.9941061911991367 1.0077498998095928 1.011422760758291 0.8469601108829692 1.0 19.582720665356618 2.7140607484386146 5.99152661589344 0.9779280054851297 1.1860795994625684 0.6316602194808769 0.0781946600743186 0.11531392352811921 14.820623609008566 0.02458862876145401 0.02378233534181331 517.6792390554828 -2.7140607484386146 0.20815159397743865 AVSVEAAERDWEEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVSVEAAERDWEEKR 15 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 ; 150.76 1.757e-06 205489000.0 206960.0 272570.0 259680.0 311140.0 268580.0 296620.0 306260.0 279230.0 446430.0 325070.0 False True 205845.7503554175 281642.32767795573 296240.68682097725 350530.2920980974 302782.07100161945 276115.3575683746 291445.03377318574 300067.5605012097 336413.30835551856 304323.75429357094 0.6764038214277712 0.9254694176987078 0.9734392489624841 1.1518334903293568 0.9949340685036887 0.9073079366062742 0.9576808568549614 0.9860142570788101 1.1054454462039527 1.0 18.215247423682033 4.754623885707187 2.1029263542149943 1.0061571028522467 0.5768915773916254 0.693498518569464 0.06676105110645009 0.4282329460858464 2.0308009782726977 0.01778233546019403 0.3539407293130621 56836.04974657357 -4.754623885707187 -0.42926552546062124 AVT(ph)PENHESMTSIFPSAAVGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTPENHESMTSIFPSAAVGLK 22 0 H0YA93;Q86UW6-2;Q86UW6 H0YA93 N4BP2 NEDD4-binding protein 2 1 AVT(0.999)PENHES(0.001)MTSIFPSAAVGLK;AVT(1)PENHESMTSIFPSAAVGLK 175.48 5.2726e-12 240290000.0 198800.0 273759.0 274771.0 329720.0 343540.0 378660.0 314300.0 288452.0 365000.0 376040.0 True False 197729.68288875633 282870.9028241896 313456.3684476542 371462.518193047 387287.7826788905 352484.1254697621 299096.1082574034 309977.75296957715 275050.6407494217 352040.80525595916 0.5616669429698428 0.8035173724208532 0.8903978282283177 1.0551689254402394 1.100121852060031 1.0012592864440262 0.8496063632167268 0.8805165433711608 0.7813032939446891 1.0 18.425383136618933 4.650372267455795 1.8621794995491283 0.9450733989421919 0.48347131551160805 0.6256795045989495 0.09170602609481432 0.4944881537508277 2.0531122675487996 0.02684920982810392 0.3734358023610327 44706.664342124735 -4.650372267455795 -0.46160208343058384 AVT(ph)PSSEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVTPSSEAK 9 0 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5 Q99700 ATXN2 Ataxin-2 1 AVT(0.979)PS(0.02)S(0.001)EAK;AVT(0.596)PS(0.355)S(0.049)EAK;AVT(0.768)PS(0.222)S(0.01)EAK;AVT(0.999)PS(0.001)SEAK 162.38 0.00071342 2956620000.0 4012230.0 3577600.0 3094880.0 3042720.0 3116190.0 3671210.0 3967140.0 3661160.0 5419910.0 3807610.0 True False 3990628.5994806634 3696678.2532951287 3530612.2028208035 3427928.040022893 3513018.325394805 3417427.893798777 3775234.282253495 3934374.350193777 4084245.8035731465 3564605.0699410737 1.119514931158035 1.0370512807906203 0.9904637774863424 0.9616571745715325 0.9855280617251881 0.9587115056915043 1.0590890738748524 1.1037335898360308 1.1457779258673004 1.0 21.765310815642987 2.029326805817642 6.782471351522551 1.0916183205885577 1.0060519064048905 0.2735921567819366 0.05494834232244183 0.20214933013991723 31.209889120876642 0.021518201804393858 0.01554716726118949 106.98596438532519 -2.029326805817642 -0.08556641418366717 AVT(ph)PVPTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVTPVPTK 8 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 AVT(0.989)PVPT(0.011)K;AVT(0.993)PVPT(0.007)K;AVT(1)PVPTK;AVT(1)PVPTK 128.03 0.012864 16175700000.0 28904300.0 25715300.0 23426500.0 20709900.0 20718500.0 25835000.0 24093900.0 26491100.0 35445100.0 27640300.0 True False 28748682.460369598 26571218.215272862 26724747.573211744 23331771.216566134 23356878.166829415 24049087.259048477 22928386.00936383 28468000.401080098 26710130.04500636 25876272.389948603 1.111005558572523 1.026856489020196 1.0327896990137082 0.9016666258942746 0.9026368951001682 0.9293876218581669 0.8860776260134805 1.1001584761543253 1.0322247981661246 1.0 24.625126468873212 -0.4469291621160125 6.717079831043036 0.9999995569445425 0.9900350370026578 0.0007922180851042127 0.07852226365306211 0.0 0.0 0.08123015279433993 0.019146130625899052 0.3573311177687829 0.4469291621160125 -0.00996451994188463 AVT(ph)PVPTKTEEVSNLK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVTPVPTKTEEVSNLK 16 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 AVT(1)PVPTKTEEVSNLK;AVT(0.991)PVPT(0.008)KT(0.001)EEVSNLK;AVT(0.989)PVPT(0.011)KTEEVSNLK;AVT(0.998)PVPT(0.002)KTEEVSNLK 183.06 3.3058000000000003e-09 9937440000.0 15708900.0 14335000.0 13439200.0 13798900.0 12974200.0 16797300.0 17058400.0 17431600.0 29961600.0 18958500.0 True False 15624325.027822852 14812131.809309527 15331322.544379529 15545839.325166898 14626387.465891765 15636142.187591044 16233220.022583801 18732434.507871263 22577965.14487091 17748552.298811555 0.8803154626233408 0.8345543658961609 0.8638069340115202 0.8758933722277646 0.8240890422860658 0.8809812724071046 0.9146222040696119 1.055434504882158 1.272101789754578 1.0 24.081198016913177 1.6900491109144478 2.6056304458206805 1.1427280177882457 0.8608923871001902 0.7510564649831568 0.06493444888896605 0.10257920103160657 1.5436272927691137 0.0383875187216888 0.016402278877046827 48.98342076976993 -1.6900491109144478 -0.2818356306880555 AVT(ph)PVSQGSNSSSADPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTPVSQGSNSSSADPK 17 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 AVT(1)PVSQGSNSSSADPK 171.56 3.8185e-13 0.0 124200.0 108570.0 91236.0 92285.0 95386.0 122390.0 129380.0 115880.0 146450.0 112870.0 True False 123531.3209999172 112183.68681804907 104081.23576247181 103968.27153780566 107532.84170288344 113929.46737507045 123121.39512040341 124527.55402671701 110359.3598294598 105666.53996713125 1.1690675311062801 1.0616765425738843 0.9849971031023391 0.9839280397573928 1.0176621827149135 1.078198144942661 1.1651881017273935 1.1784956152198482 1.0444115976901327 1.0 16.68915908421692 2.474180875263131 6.694877198946827 1.1212552716520394 1.0387355966771865 0.07478092368777667 0.07047657213163425 0.2155231328086422 50.33371504100611 0.024714143050054746 0.021473624512327823 297.97571823476187 -2.474180875263131 -0.08251967497485291 AVTDKFLSAIVSSVDKIPYGMR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTDKFLSAIVSSVDKIPYGMR 22 2 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 55.127 0.054119000000000014 45759000.0 22373.0 33302.0 33922.0 30032.0 29389.0 35624.0 39896.0 24403.0 49518.0 36115.0 False True 22252.546253873974 34410.43693851591 38697.922744690375 33834.04812074966 33131.514947749616 33161.39672987588 37966.07806247964 26224.075775923167 37314.9524072051 33810.10978039292 0.6581624963187377 1.0177558476450475 1.1445666102844771 1.0007080231478758 0.9799292330888308 0.9808130451296777 1.122920875119336 0.7756282350532612 1.1036625627534844 1.0 15.045167080175041 4.740049012960971 24.701381029808747 1.0031594791104854 0.6581623630701239 0.536652372862626 0.09873102964611931 89.54317183296726 1485885.7233252826 0.023995017519907038 0.15148107186928642 54960.289662433206 -4.740049012960971 -0.34499711604036154 AVTEMNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTEMNGR 8 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YB86;Q4VXU2;A0A6I8PLA1;A0A6I8PS38;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YEU6 P11940-2;B1ANR0 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 0 ; 130.27 0.0024544 318390000.0 284900.0 321680.0 302420.0 310800.0 291900.0 310290.0 330280.0 286380.0 373090.0 329450.0 False True 283366.13005536544 332386.9243403339 344998.1073182379 350147.24813295837 329071.7347731501 288840.3826440935 314303.0946078747 307751.12980817433 281146.96864986763 308424.21894366486 0.9187544707931111 1.0776939809679666 1.118583062315393 1.135278057385352 1.0669451831642853 0.9365035717148125 1.0190610052749574 0.997817651487306 0.9115593114340365 1.0 18.234556531447332 2.764573072137131 18.517619313257807 0.9787757174943208 1.071296029661231 0.34228311092198094 0.06196733459226828 35.32183727361377 25143.580893158956 0.019354781424595107 0.020501317029719295 581.5312695128216 -2.764573072137131 0.09252031216691026 AVTEQGAELSNEER ddPTM_BT-474_Trastuzumab_2h_R1 6 AVTEQGAELSNEER 14 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 ;;;;; 346.92 1.9794999999999998e-81 5364030000.0 1433751.0 1422016.0 1343151.0 1366435.0 1440226.0 1584318.0 1479760.0 1444914.0 1705591.0 1593331.0 False True 1426031.8439207107 1469346.9429331748 1532254.9859222223 1539425.5308962644 1623630.2442116977 1474797.8257434152 1408178.3555678502 1552740.8198046247 1285270.9517984865 1491643.2514607015 0.9560140083925963 0.9850525194240024 1.0272261711516821 1.0320333158674313 1.08848428913666 0.9887067998995133 0.9440450015034643 1.0409599066560271 0.8616476832110336 1.0 20.508471104320694 -0.3639543928049491 6.468985183255096 0.9999988949283118 0.9975688737498769 0.0 0.05959624552321141 0.0 0.0 0.05565904414452135 0.013118962516317487 0.4325592536209647 0.3639543928049491 -0.002430021178434938 AVTEQGHELSNEER ddPTM_BT-474_Trastuzumab_2h_R1 14 AVTEQGHELSNEER 14 0 P31946-2;P31946;Q4VY19;A0A0J9YWE8;Q4VY20;A0A0J9YWZ2 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;;;;;;;;;;; 293.8 1.4915000000000001e-43 201342140000.0 44448109.0 55488612.0 52165609.0 55733629.0 52996150.0 55735918.0 55604572.0 48957827.0 57224106.0 55460788.0 False True 44208805.319793105 57335516.90684575 59510073.3155982 62789500.71690225 59744895.56970917 51883025.17689836 52914766.42226711 52611308.6535482 43121991.84003516 51921233.02747055 0.851459080264967 1.1042788000914885 1.1461606330518486 1.2093222185937207 1.1506832963327212 0.9992641189674372 1.0191353967705448 1.0132908173754762 0.8305271143545478 1.0 25.62982130913361 1.9590485560431805 1.2950964257653244 0.9343274804224786 1.0956519395765 0.2595798173322307 0.10166072215993556 0.6044395340552994 1.8782474393784692 0.0769693115638723 0.034859178589060326 91.00150106463164 -1.9590485560431805 0.1613244591540215 AVTFSPDLGPVPHEGLGEYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTFSPDLGPVPHEGLGEYNR 21 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 0 ; 166.28 1.3614e-11 762710000.0 312560.0 362620.0 343510.0 382670.0 349550.0 353860.0 379260.0 352240.0 413430.0 364990.0 False True 310877.21168868046 374689.5874915815 391873.22215755505 431115.98276396125 394063.1205548291 329398.49109684146 360913.7448861048 378525.9374384779 311545.71617817396 341696.02571633947 0.9098063433338163 1.0965582251244321 1.146847468699769 1.261694460332571 1.153256376712916 0.9640103083033607 1.056242150108351 1.107785601676014 0.9117627737256888 1.0 18.382353942242997 2.7505388721460284 24.813677634859967 1.0262905390621273 1.1227549338317286 0.21901474269587917 0.09595495226844367 1215.608784797498 2518204.063714586 0.030977868686621536 0.03261446701765411 563.0395107921124 -2.7505388721460284 0.09646439476960134 AVTGYKDPYSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTGYKDPYSGK 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 131.32 0.00018311 1430190000.0 2963700.0 3047600.0 2798200.0 2870300.0 2692840.0 3820400.0 3486000.0 3250500.0 4814700.0 3965500.0 False True 2947743.7684980263 3149037.5236868956 3192162.2376095885 3233679.685701509 3035757.212286847 3556304.740254258 3317368.862186788 3493068.815704555 3628181.6986746327 3712418.394964645 0.7940225090189758 0.8482442409934469 0.8598605808923078 0.8710439777174697 0.8177303550710797 0.9579482595705988 0.8935870123600066 0.9409146394820136 0.9773094820335264 1.0 21.82392788278673 2.353035692462138 0.3683705930741125 1.009460902400992 0.801953113918232 0.7837336248102764 0.030855602270803608 0.6425066267852704 0.20198750067841476 0.03470626498006152 0.047744652636082255 225.44244842602876 -2.353035692462138 -0.20750778848275997 AVTGYRDPYTEQTISLFQAMK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTGYRDPYTEQTISLFQAMK 21 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 225.83 2.419e-25 623470000.0 457820.0 480350.0 473030.0 465180.0 475170.0 531240.0 544020.0 526700.0 660350.0 580450.0 False True 455355.14798858337 496338.15937229287 539628.5123495337 524071.74030402035 535680.0829467557 494516.629204448 517703.674241783 566005.0285284074 497615.59073665924 543405.1840517529 0.8379661463539078 0.913385028224211 0.9930499895601668 0.9644216795953656 0.9857839024512113 0.9100329619920431 0.9527028623129179 1.0415893059910561 0.9157358180250029 1.0 19.05166880328356 4.556995647747577 2.736547784472514 0.9727005238258005 0.8340613002446852 0.5478744483955937 0.03736515612725072 0.2405549534517727 2.9980755121973024 0.009502615268698476 0.06131572630700573 36057.50295255592 -4.556995647747577 -0.13863922358111536 AVTHTSPEDVSFAESR ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTHTSPEDVSFAESR 16 0 Q9BTW9-4;Q9BTW9;J3KR97;A0A0J9YVR1;A0A0J9YWI5;I3L439;A0A0J9YVU1 Q9BTW9-4 TBCD Tubulin-specific chaperone D 0 125.5 7.6723e-05 240470000.0 59329.0 121480.0 122610.0 118380.0 117660.0 121520.0 125070.0 114250.0 105930.0 128960.0 False True 59009.579256071556 125523.38836378917 139872.42225477533 133366.89586222524 132643.30357454202 113119.60842731065 119019.88628620247 122775.91514974466 79824.97088927748 120729.66239178926 0.4887744907674384 1.039706281596675 1.1585588784375493 1.1046738077459863 1.0986803155639653 0.9369661621368357 0.9858379782423456 1.016949047296388 0.6611877255999543 1.0 16.881420653661852 -3.0984912848239383 9.954244800932662 0.999866266564594 0.9693084677136733 0.0 0.20154765183518727 0.0 0.0 0.0 0.04316367201033453 0.0007970924860310426 3.0984912848239383 -0.030557798850920692 AVTIANS(ph)PSKPSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTIANSPSKPSEK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 AVTIANS(0.858)PS(0.137)KPS(0.006)EK;AVTIANS(0.987)PS(0.013)KPSEK 250.47 1.3055e-18 1118160000.0 1574780.0 1048090.0 950210.0 810270.0 762740.0 1329330.0 1343110.0 1352740.0 2254030.0 1434180.0 True False 1566301.559454508 1082975.042066215 1083991.308626622 912850.0989211459 859870.4178858252 1237436.546006229 1278138.638121543 1453688.3278745364 1698554.5089545737 1342649.4045367274 1.1665752460486514 0.8065955553303126 0.8073524666706617 0.6798871662525475 0.6404281080231201 0.9216378764441479 0.9519526346958435 1.0827013537283936 1.2650767230933597 1.0 20.35665120367362 1.9691030626604904 1.808660804723219 1.1349768577380366 0.8146170725638634 0.42067322489586834 0.14712644221317847 0.32858648314901256 1.9982326011570473 0.09360753704141299 0.045889315261547804 93.13288634062005 -1.9691030626604904 -0.3203597851741732 AVTIANSPS(ph)KPSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTIANSPSKPSEK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 AVTIANS(0.253)PS(0.746)KPSEK 148.15 4.7462e-06 706740000.0 1376200.0 924200.0 774430.0 720270.0 808710.0 1215100.0 1281300.0 1126400.0 2014300.0 1305000.0 True False 1368790.6921101925 954961.4383093017 883463.0125337692 811456.1081490522 911694.4249002889 1131102.997037733 1219318.6239586715 1210457.6877433055 1517902.7552371514 1221713.782733291 1.1203857331034217 0.78165725213708 0.7231341947843407 0.6641949363406658 0.7462422359356475 0.9258330494620122 0.9980395090826749 0.9907866350129876 1.2424372849761987 1.0 20.220474906365858 2.2143363683557755 1.552376349773772 1.0801818872693263 0.7956257334201619 0.4451516024801979 0.13223958528439853 0.36960712473177737 1.7473511469674503 0.07727206024555916 0.04547517524192351 163.80847543300078 -2.2143363683557755 -0.28455615384916444 AVTIHDTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AVTIHDTEK 9 0 A0AVT1;A0AVT1-4;A0AVT1-3 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ; 159.37 6.6105e-05 1656880000.0 1829160.0 2056700.0 1961170.0 1837280.0 1734600.0 2292000.0 2340300.0 2155300.0 2963800.0 2390700.0 False True 1819312.0057987806 2125156.016198595 2237285.6892047753 2069879.4596194355 1955491.0282203043 2133559.4347876576 2227090.748185812 2316139.430391641 2233411.202885304 2238123.4792187563 0.8128738305510441 0.9495258129995607 0.9996256730150235 0.924828088726343 0.8737190089721465 0.9532804845657586 0.9950705440806173 1.0348577511014347 0.9978945413971989 1.0 21.09385820257428 2.3013772130463317 2.9673316381601142 1.014140477049793 0.9194177005228754 0.4708983044312388 0.04690538645565545 0.2389073651554357 4.2997047908886215 0.019021596706467858 0.014590726561600714 200.15996345039989 -2.3013772130463317 -0.09472277652691763 AVTKDEDEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTKDEDEWK 10 1 Q9UKY7;Q9UKY7-2 Q9UKY7 CDV3 Protein CDV3 homolog 0 143.17 3.142e-05 263040000.0 986390.0 657850.0 682890.0 593920.0 625670.0 924120.0 886010.0 833910.0 1480700.0 901970.0 False True 981079.3858382311 679746.1395712781 779034.9762137145 669110.2111040105 705345.3658633679 860237.7595444893 843150.3114131143 896140.5987091793 1115801.3253634751 844405.5023846313 1.1618581156418661 0.8049996567427032 0.9225839647109023 0.7924038974336611 0.83531592803629 1.0187495902325923 0.9985135210891304 1.0612680710611742 1.321404612135298 1.0 19.687576454160673 1.9504592508885303 1.4388341332411339 1.1494144026184143 0.9006328902053916 0.3541056649252302 0.12634704032576882 0.41604260259091913 1.601602987007061 0.08597624177559987 0.039238673390189764 89.21939026262378 -1.9504592508885303 -0.2487815124130227 AVTLHDQGTAQWADLSSQFYLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVTLHDQGTAQWADLSSQFYLR 22 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 329.52 1.0343999999999993e-80 10004460000.0 1699421.0 2013378.0 2017199.0 1726994.0 1866352.0 1974775.0 1946164.0 1764088.0 2067791.0 1882634.0 False True 1690271.506159421 2080392.069617295 2301203.085391974 1945631.263327315 2104020.864465016 1838263.4523703305 1852020.6122515455 1895733.2044173572 1558211.6150298286 1762482.6863159414 0.9590287151657297 1.180375890083703 1.3056599666247513 1.1039151070438047 1.1937824302053035 1.0429966016930305 1.050802159153553 1.075603873522267 0.8841003813131953 1.0 20.74917765464337 2.00563699042953 0.9521220581186497 0.9667762314399391 1.1551864646991128 0.3598595698861543 0.0933625707438176 0.6160413179521461 1.0292428517059005 0.07605142504468904 0.03650540221504056 101.30642514266428 -2.00563699042953 0.18841023325917372 AVTNHSVYCSTK ddPTM_BT-474_Trastuzumab_2h_R1 4 AVTNHSVYCSTK 12 0 Q7Z4W1;J3KS22;J3QS36;J3QL34;J3QS45;J3KRZ4;J3KSZ5 Q7Z4W1 DCXR L-xylulose reductase 0 ;;; 147.18 6.5366e-05 3578470000.0 4802250.0 5437800.0 5227900.0 4967700.0 4312170.0 5720300.0 5567700.0 4678160.0 6986000.0 5644000.0 False True 4776395.219580138 5618793.88578049 5963942.878278604 5596610.310650244 4861299.289265971 5324869.125137794 5298369.080320529 5027268.054415145 5264393.907603999 5283795.087928496 0.9039705628426852 1.0634011713696736 1.1287233473349472 1.0592027543680516 0.9200393293775205 1.0077735863192607 1.00275824329852 0.9514502305171864 0.9963281732160996 1.0 22.333143087505874 3.2669828290980973 24.98373893112221 0.9784356663280106 1.0470013214233167 0.19281930082395393 0.058249410372397115 312.7617488709934 274922.0913117156 0.016276330420491023 0.022034225259584497 1849.195505034312 -3.2669828290980973 0.0685656550953061 AVTT(ph)PGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVTTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 AVT(0.371)T(0.629)PGKK 51.276 0.088054 551120000.0 1656800.0 622840.0 562540.0 766290.0 551960.0 583360.0 761910.0 943280.0 1881500.0 1127500.0 True False 1647879.9728877856 643570.8528852693 641740.7423146667 863302.2354305161 622248.8342767655 543033.6962817305 725053.5025211516 1013672.3434787843 1417829.5358083197 1055541.984698684 1.5611695193329436 0.6097065414872945 0.6079727302347511 0.8178757907739266 0.5895064746802973 0.5144595896265988 0.6869016230824073 0.9603335141312718 1.3432241979584116 1.0 20.00955253305135 1.5157925570990154 4.0343357736161245 1.171431591108176 0.7443390663883315 0.2290907128556865 0.2917925062278892 0.24417463070760376 8.603280944002881 0.18287387991773407 0.07387766941782965 32.793861420058306 -1.5157925570990154 -0.4270925247198446 AVTTVTQSTPVPGPSVPPPEELQVS(ph)PGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVTTVTQSTPVPGPSVPPPEELQVSPGPR 29 0 P51610-2;P51610;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR 156.42 5.0549e-09 974710000.0 345185.0 418263.0 388767.0 425377.0 390084.0 458263.0 385835.0 393019.0 436587.0 450909.0 True False 343326.56231365894 432184.63110967755 443502.01437665947 479229.6845851141 439758.88519098883 426584.3574450678 367170.68701716565 422348.0734900441 328995.9838160761 422131.6015773827 0.8133164184599013 1.0238149181315248 1.050625001112027 1.1352613327085026 1.0417577919959986 1.0105482646905526 0.8698014686537465 1.0005128066978461 0.7793682884359144 1.0 18.687333310679584 2.3389372546020755 7.096268619247105 0.9206643981724666 1.0226384881356223 0.20035686314493972 0.0963940630447873 0.36414651847930124 22.483985429401947 0.03357214502869486 0.027975832706818474 218.24145811870184 -2.3389372546020755 0.10197408996315571 AVVHTHLLNPEWLVNYFGSLSVEDSLECLR ddPTM_BT-474_Trastuzumab_2h_R1 3 AVVHTHLLNPEWLVNYFGSLSVEDSLECLR 30 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 322.45 4.5829999999999984e-93 2318220000.0 294696.2 407655.6 322999.0 355304.0 332097.4 366303.0 368469.9 178733.0 353371.0 308034.6 False True 293109.5884030255 421224.1702129855 368474.45164236304 400285.44996986 374388.0353944936 340981.33579451276 350645.60324528936 192070.96404778401 266287.4519788052 288375.5681063109 1.0164161628802388 1.4606791170939257 1.2777589102365403 1.3880699138225643 1.2982654454848748 1.1824210283612115 1.215933810023817 0.66604451032057 0.923405036451067 1.0 18.137589415489327 1.856034814067965 5.931174480677102 0.839094126148102 1.2786901362643006 0.6412233305559529 0.13689022902243786 0.12447363960655763 5.444019743324861 0.05834767370592232 0.03496221244777139 71.7851833657718 -1.856034814067965 0.43959601011619864 AVVIVDDR ddPTM_BT-474_Trastuzumab_2h_R1 8 AVVIVDDR 8 0 Q15233;Q15233-2;H7C367;C9IZL7;P23246;P23246-2 Q15233;P23246 NONO;SFPQ Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich 0 ;;;;;;; 181.81 0.00053946 14355450000.0 9632010.0 12149510.0 10595270.0 11549840.0 10754780.0 10631170.0 10293240.0 9728440.0 11681020.0 10323950.0 False True 9580152.32837692 12553899.095816106 12086991.92026224 13012048.559768222 12124337.484424727 9896262.240982313 9795316.657204693 10454425.592817368 8802389.138648806 9665066.672221718 0.9912143033540731 1.2988942054478687 1.2505854672478727 1.3462968235041808 1.254449441023638 1.0239207422567578 1.0134763669408846 1.0816713373394866 0.9107427229599641 1.0 23.20434825389228 2.734919090728262 22.495714274223232 1.0174347558988313 1.2400054199145571 0.568282733346458 0.09636107961440292 57.9438273848354 357948.46112485876 0.030234427296878873 0.029596711681435184 543.1491331202377 -2.734919090728262 0.2225706640157259 AVVPGPAEHPLQYNYTFWYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVVPGPAEHPLQYNYTFWYSR 21 0 B9A044;B8ZZ50;O60573-2;O60573;C9JEL3 B9A044 EIF4E2 Eukaryotic translation initiation factor 4E type 2 0 ; 235.68 8.280199999999998e-30 712100000.0 263462.0 315080.0 258070.0 258060.0 255814.0 309380.0 290970.0 270732.0 330260.0 304420.0 False True 262043.54986537993 325567.2473301181 294404.0128153482 290730.3695405119 288390.3965716299 287993.2888021838 276894.6694866578 290935.3965892401 248871.84825727146 284991.6549729254 0.9194779752069387 1.1423746683426483 1.0330267840415084 1.020136430198743 1.011925758313967 1.0105323569195162 0.9715886927038729 1.0208558444171967 0.8732601250409057 1.0 18.120560149835452 2.277914313874818 0.8544929363322232 0.9593008740972533 1.0372493894429775 0.17110099173240645 0.061619898587775154 1.0218738727382999 1.4333401387858657 0.04504404342178557 0.0272429190448388 189.63317388161985 -2.277914313874818 0.07794851534572422 AVVPSKR ddPTM_BT-474_Trastuzumab_2h_R1 2 AVVPSKR 7 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;G3V576;G3V555;G3V575;P07910-2;G3V4C1;B2R5W2;G3V2D6 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 111.04 0.010694 8579100000.0 3657900.0 4192400.0 3819100.0 3644100.0 4163200.0 4021100.0 3899300.0 3526200.0 5087300.0 4188500.0 False True 3638206.2728309003 4331941.49964068 4356796.083787722 4105442.6863620137 4693358.842780331 3743130.8216512413 3710675.9622274684 3789342.949680786 3833603.081327491 3921186.34404474 0.9278330468421597 1.1047527762152314 1.111091313067679 1.0469899479776348 1.1969231836962608 0.9545914152578037 0.9463146192638914 0.9663766567574149 0.9776640906519872 1.0 21.90285877308667 2.6782840819247418 24.999957092566557 0.9650140097735211 1.0792006141049182 0.415321193619102 0.06428251826484985 225.66680840339166 93595.8884154758 0.020058749393225446 0.018911572496468503 476.74273312801495 -2.6782840819247418 0.11418660433139705 AVVVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 AVVVSPK 7 0 O75909;G3V5E1;O75909-1 O75909 CCNK Cyclin-K 1 AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK 122.44 0.0045529 21462430000.0 31335350.0 25581660.0 22643550.0 20611270.0 20348550.0 26077260.0 26779680.0 26502000.0 38062000.0 24233640.0 True False 31166643.9572847 26433130.08865996 25831565.01873516 23220654.668678902 22939817.227194905 24274600.39546718 25484244.570087846 28479713.814429197 28682130.10466987 22687028.347736962 1.3737649320825918 1.1651208648177438 1.1386050487882369 1.0235212083646543 1.0111424412039913 1.0699770822073567 1.123295840225364 1.255330287330031 1.2642524029609599 1.0 24.435364314704874 4.769337386220109 2.4279378974431896 1.1198157792876244 1.4439922360896715 0.4422502617899172 0.08802104482014218 0.6711554296523776 4.539997738353456 0.02476839353365892 0.4686609599200686 58794.59271151822 -4.769337386220109 0.3241764568020471 AVVVS(ph)PKEENK ddPTM_BT-474_Trastuzumab_2h_R1 6 AVVVSPKEENK 11 1 O75909;G3V5E1;O75909-1 O75909 CCNK Cyclin-K 1 AVVVS(1)PKEENK;AVVVS(1)PKEENK;AVVVS(1)PKEENK;AVVVS(1)PKEENK;AVVVS(1)PKEENK;AVVVS(1)PKEENK 169.04 4.5661e-05 5530920000.0 6062200.0 4531600.0 3855310.0 4446540.0 3946460.0 5996940.0 6757750.0 5194350.0 10888170.0 5846510.0 True False 6029561.788773743 4682431.566589957 4398104.13704475 5009471.5080859875 4449018.28849896 5582385.653078308 6430851.815388049 5581978.773374847 8204926.3975031 5473380.7263509575 1.1016156357888858 0.8554916605831808 0.8035443461607901 0.91524265505019 0.8128464857340687 1.019915465811205 1.1749323017906388 1.0198411278976185 1.4990600522272153 1.0 22.384000782696624 2.443778021084 3.395731825747837 1.1584817422135376 0.8913891424011794 0.4295885512062745 0.14883826743891118 0.23244317813722803 5.624634625606025 0.05228709351730181 0.0442169038821837 277.82928488989904 -2.443778021084 -0.2670925998123582 AVYDEQGTVDEDSPVLTQDRDWEAYWR ddPTM_BT-474_Trastuzumab_2h_R1 5 AVYDEQGTVDEDSPVLTQDRDWEAYWR 27 1 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 ;;;; 410.71 1.742899999999999e-165 1632147000.0 444799.0 522170.0 493816.0 545326.0 514838.0 574117.0 596384.0 514184.0 591805.0 581964.0 False True 442404.25160581496 539550.1127915698 563341.0004743834 614364.2156864658 580399.5676160988 534429.6431160499 567534.6275118776 552555.0210534476 445962.5875307164 544822.5592755526 0.8120152957580855 0.9903226355182619 1.0339898575849256 1.1276409268063026 1.0653001747722282 0.9809242183852994 1.0416870921544163 1.014192624086963 0.8185464789191369 1.0 19.055426916188306 -1.307916033419913 5.360764850637924 1.000000270490268 0.9986124423186918 0.0 0.09595268258082365 3.0724415609488704e-07 3.9783181265316e-08 0.09202188149216484 0.021685538122444892 0.04921346758984492 1.307916033419913 -0.001387828171576122 AVYTT(ph)T(ph)LDYNCRK ddPTM_BT-474_Trastuzumab_2h_R1 1 AVYTTTLDYNCRK 13 1 Q8N5W9 Q8N5W9 FAM101B Filamin-interacting protein FAM101B 2 AVY(0.041)T(0.048)T(0.871)T(0.871)LDY(0.17)NCRK 54.982 0.039941 0.0 84300.0 59265.0 62088.0 63589.0 64385.0 84242.0 87714.0 72793.0 99619.0 82203.0 True False 83846.13816661044 61237.59969855099 70829.45072142949 71639.36088007304 72584.04811020642 78418.54882433759 83470.93871998039 78225.1832953643 75069.23227620995 76956.734162471 1.0895230817564912 0.7957406244561551 0.9203801524619588 0.9309043797106578 0.9431799426021255 1.018995279331636 1.0846476221789325 1.0164826268512819 0.9754732070324587 1.0 16.231759955845813 2.789132055837775 3.526675116726828 1.0259821055422802 0.9247274542058493 0.2490784523122599 0.07115791583317733 0.29119820429859017 7.408668492961862 0.022033680272733665 0.022824029022239983 615.3639578627041 -2.789132055837775 -0.10125465133643086 AWDDFFPGSDR ddPTM_BT-474_Trastuzumab_2h_R1 7 AWDDFFPGSDR 11 0 F8WF90;C9JQU6;F8WF33;O75915 F8WF90 ARL6IP5 PRA1 family protein 3 0 ;;;;;; 188.87 6.8822e-06 1599227000.0 804208.0 1242632.0 1269274.0 1007634.0 1325702.0 1476224.0 1121764.0 883813.0 1187245.0 1116037.0 False True 799878.2334839092 1283992.2549330944 1447976.7464726185 1135200.3610849597 1494522.291648628 1374176.109537511 1067499.989765375 949767.613971478 894664.3780179367 1044810.563172653 0.7655724986690537 1.2289235007675905 1.3858749112142572 1.0865130973004624 1.430424178628505 1.3152394874001967 1.0217163066612034 0.9090333190041942 0.8562933890151483 1.0 19.99480995723211 2.055956442106547 4.6910936411445885 0.9223677417503102 1.2160096933342226 0.3392856002876473 0.177688955891181 0.22009581094823957 10.119865069012565 0.0710425319046233 0.0500655585281087 113.75131923562266 -2.055956442106547 0.2936419515839124 AWDLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 AWDLHK 6 0 Q658L1-2;Q658L1 Q658L1-2 FAM154B Protein FAM154B 0 79.033 0.068216 513980000.0 853300.0 895780.0 854460.0 807570.0 809690.0 998340.0 873390.0 830370.0 1080800.0 978490.0 False True 848705.927610543 925595.4957895541 974760.5409005391 909808.2791979829 912799.2220913749 929327.1056395759 831140.7890261948 892336.4259334223 814451.3219780136 916041.9304725642 0.9264924446992463 1.0104291790574056 1.0641003522597305 0.9931950153511362 0.9964600873897591 1.0145028024646843 0.9073174069634882 0.9741218128225716 0.8890982987622167 1.0 19.805054111514842 2.253568000436075 24.988017839811654 0.9428982675534961 1.0036238393318684 0.30627617506868976 0.04281046855854383 273.06738787277556 454669.69154608337 0.014425875470441307 0.012024436124597186 179.29492646296902 -2.253568000436075 0.060725571778372234 AWEEYYK ddPTM_BT-474_Trastuzumab_2h_R1 6 AWEEYYK 7 0 A0A087WTP3;Q92945;M0R3J3;M0R251;M0QYG1;M0R263;M0R0C6;Q96AE4;E9PEB5;Q96AE4-2 A0A087WTP3;Q96AE4 KHSRP;FUBP1 Far upstream element-binding protein 2;Far upstream element-binding protein 1 0 ;;;;; 154.68 0.0038667 13456190000.0 4678700.0 4966840.0 4564670.0 3872780.0 3534570.0 4618450.0 4990370.0 4200970.0 6212320.0 4763090.0 False True 4653510.39905244 5132158.266881811 5207335.859177102 4363073.550914919 3984676.5384622617 4299187.422161895 4748966.738035308 4514467.7134934245 4681376.976823143 4459105.518313494 1.0435972819975954 1.150938959799022 1.1677983034468764 0.9784638495312182 0.893604450959333 0.9641367320206223 1.0650043419092368 1.012415538262676 1.0498466469557142 1.0 22.088322908681402 3.7310542183127926 24.87073241530447 0.9952577358022183 1.1237942605485902 0.5358658724966594 0.05371229804449628 420.52025173613526 1393298.3805081781 0.01541237650118071 0.024396655924181037 5383.369855373506 -3.7310542183127926 0.1285365247463719 AWEITKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AWEITKK 7 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 81.296 0.044231 475540000.0 226300.0 291620.0 284410.0 307550.0 273630.0 366830.0 314820.0 280360.0 414040.0 390990.0 False True 225081.62594429345 301326.3954119871 324452.45586396387 346485.79846618813 308475.15856792405 341471.9055249369 299590.9538708105 301281.88683923346 312005.3898517554 366036.6834566197 0.6149154883023321 0.8232136532504081 0.8863932784005129 0.9465876348626993 0.8427438355491562 0.9328898467232615 0.8184724848932146 0.8230920573154507 0.852388309568793 1.0 18.48162871417274 4.728837656036211 2.7358819707871205 0.8768499248664581 0.5679802342400603 0.6782706096166994 0.05604139001888337 0.2537747967415618 2.610625387362216 0.013710554329314454 0.17519819806440623 53559.640837098035 -4.728837656036211 -0.3088696906263978 AWEVDTCR ddPTM_BT-474_Trastuzumab_2h_R1 2 AWEVDTCR 8 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 110.12 0.008112300000000001 643000000.0 227920.0 265760.0 227760.0 237010.0 204951.0 238700.0 238400.0 208604.0 329440.0 261590.0 False True 226692.90404429246 274605.6609446875 259826.6282745907 267015.441698817 231050.29501024957 222199.23083936033 226867.6812235599 224171.08974964853 248253.92626983416 244895.10224153366 0.9256734902795694 1.1213195299996286 1.0609711092479526 1.0903257731772302 0.9434663776263303 0.9073241106317064 0.9263871720872808 0.9153759617803806 1.0137153581168308 1.0 17.901804395572235 3.2267675395579962 24.83626124459045 0.9410977785830232 1.055511449010491 0.4046488477037279 0.05761728640278131 166.04964053188064 349700.62800415675 0.01591816839457306 0.01917410151113082 1685.650522661611 -3.2267675395579962 0.11441367042746786 AWKPSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 AWKPSSK 7 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 84.476 0.019624000000000003 1819560000.0 1956090.0 1907590.0 1952500.0 1680730.0 1701220.0 2225650.0 2268660.0 2111220.0 2889600.0 2298330.0 False True 1945558.6287820304 1971082.9799874963 2227395.028565766 1893510.2456708709 1917860.2830790626 2071796.0541165553 2158916.2486771895 2268769.956957934 2177496.7986562443 2151648.6117006894 0.9042176395355918 0.9160803345252216 1.035203897352554 0.880027638051093 0.891344559074245 0.9628877330852746 1.003377706256021 1.0544333050574974 1.0120132008614195 1.0 21.037011058208684 2.284078471894808 2.820624376967908 1.0276431512956723 0.9285382531562553 0.5088831609496562 0.042375538120266315 0.2127135178653049 3.4765945217373844 0.017564249268377328 0.013176223171381795 192.34392403169917 -2.284078471894808 -0.09910489813941703 AWLDEDSNLSPS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 6 AWLDEDSNLSPSPLR 15 0 Q9C086;B8ZZ93;B8ZZH7;F8WCL7;J3KQ70 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 AWLDEDSNLS(0.002)PS(0.998)PLR;AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR;AWLDEDSNLS(0.004)PS(0.996)PLR;AWLDEDSNLSPS(1)PLR 358.65 9.839299999999992e-83 989919000.0 688898.0 779602.0 651480.0 712836.0 682851.0 708113.0 661092.0 680607.0 778279.0 721013.0 True False 685189.0497117629 805550.5812906389 743202.7212343273 803080.9645112787 769808.0272750271 659162.8150287052 629112.4543433125 731397.350392318 586482.568854299 674997.3330497146 1.015098899155647 1.1934129837981284 1.1010454187669942 1.189754277817466 1.140460842707255 0.9765413620977327 0.9320221333333438 1.0835559113808373 0.8688664978934127 1.0 19.36452227644687 2.7383989383814984 24.989985256348557 0.9827711455072186 1.1335294454296692 0.5557093268960465 0.06922374253003599 11.127297151857922 1719761.2179784214 0.02092183265938732 0.020892675978199285 547.5186769108294 -2.7383989383814984 0.1507582999224506 AWNPFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AWNPFR 6 0 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299;M0R2U2;M0R1H0;M0R2B0 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ; 146.24 0.025692000000000003 2055010000.0 696170.0 1017870.0 1102450.0 809670.0 568620.0 704290.0 843170.0 636580.0 1208740.0 676920.0 False True 692421.8980717575 1051749.1876345929 1257665.3773328178 912174.1389826651 641030.3865252093 655604.0900203311 802382.6458778065 684084.8320877429 910862.2232861808 633718.3860596308 1.0926334367180612 1.6596475828549289 1.9845808564160479 1.439399832872819 1.0115382488916622 1.0345353779251734 1.2661501757380051 1.0794776467529739 1.4373296456645202 1.0 19.273482347459904 3.419471468422635 5.7496295347894115 1.1447559900308126 1.6068628111870915 0.41773323872018486 0.2379909506590169 0.1768854239641796 12.00150658117439 0.06605702942572309 0.09058048350591184 2627.068931868266 -3.419471468422635 0.4621068211562789 AWRDPDEPVLLEEPVVLALAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 AWRDPDEPVLLEEPVVLALAEK 22 1 P14550 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] 0 ;;; 179.38 5.1954e-17 566287000.0 425203.0 479093.0 425346.0 423305.0 428661.0 489260.0 477316.0 427187.0 682753.0 530042.0 False True 422913.75429249415 495039.32088716613 485231.0196262918 476895.3695975601 483248.43747719575 455438.60779415775 454226.40155580814 459065.86315163266 514497.67157147895 496214.26576821285 0.8522805236922427 0.9976321823814804 0.9778659202292032 0.9610674309398496 0.9738705047688541 0.9178265100642998 0.9153836011800239 0.9251363671315073 1.036845788330895 1.0 18.920603686606306 1.2391546053026792 24.999999296835956 1.018422914721067 0.9422572352462123 0.3780514242040147 0.0400928705799458 16.283211686026267 685601.4587476272 0.03064916730610495 0.009647648550396232 17.344213277489796 -1.2391546053026792 -0.07616567947485475 AWSS(ph)QDEVSTNVR ddPTM_BT-474_Trastuzumab_2h_R1 1 AWSSQDEVSTNVR 13 0 A1L390-3;A1L390;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 AWS(0.026)S(0.974)QDEVSTNVR 193.77 1.6646e-06 285980000.0 270020.0 276970.0 222240.0 285660.0 282370.0 262170.0 200240.0 173860.0 281840.0 232830.0 True False 268566.24232204235 286188.7790180992 253529.4602552912 321824.5267106202 318328.1457618856 244046.8049817972 190553.6262089165 186834.31604319144 212384.3084625123 217970.59006420808 1.2321214630053081 1.3129696943692997 1.163136091803066 1.4764584828431195 1.4604178741183156 1.1196318040424986 0.8742171416464244 0.8571537838575161 0.9743713975355565 1.0 17.733773965260937 2.4583342498775327 3.917539241313665 0.9096775249361524 1.3262580853153854 0.7917910895131824 0.0970540429599782 0.09604032055431616 3.307700950173908 0.03631223434877596 0.03113044719961239 287.2990896567618 -2.4583342498775327 0.41658056037923297 AWTVEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AWTVEQLR 8 0 Q00688;G3V5F2 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ; 155.82 0.00093732 1014000000.0 750670.0 1032050.0 1134920.0 947380.0 591530.0 718800.0 984290.0 689070.0 1282970.0 750960.0 False True 746628.4761272781 1066401.1603626 1294706.8710985202 1067318.2108629397 666857.8392270007 669111.0478731971 936676.1323470542 740491.9024265619 966799.23441722 703033.0898707983 1.0620104329150306 1.516857706596116 1.8416016112932299 1.5181621267059975 0.9485440284888358 0.9517490108412461 1.3323357688884805 1.0532817204417046 1.3751831149155382 1.0 19.423233069095964 3.2538256030036146 24.81201337862886 1.1166699168950496 1.5124540872826955 0.40100853503476797 0.22309765076510493 216.90304589330336 352556.2416351573 0.06271979829046508 0.08459946373254469 1794.0130712387981 -3.2538256030036146 0.3957841703876459 AWVESR ddPTM_BT-474_Trastuzumab_2h_R1 6 AWVESR 6 0 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ;;;;; 126.04 0.041095 9696980000.0 8241120.0 10381250.0 9729870.0 10363940.0 9537850.0 9729280.0 9856110.0 8573720.0 10769280.0 10180220.0 False True 8196750.725594506 10726783.630651863 11099751.122453887 11676013.741361286 10752438.662233949 9056717.773861619 9379332.305303443 9213534.522868017 8115335.244958729 9530509.643875163 0.8600537675193681 1.1255204633831406 1.164654518721064 1.2251195557904864 1.1282123479245483 0.9502868274921658 0.9841375388913357 0.9667410104127168 0.8515111518904024 1.0 23.18412193362014 2.735587662789501 24.026036920253855 0.9528382346616714 1.1125542548807477 0.3738219462801461 0.09655363009864423 162.02687953005352 1309419.729983577 0.031331251509884465 0.030761370284607563 543.9859247595936 -2.735587662789501 0.15971602021907627 AWVWNTHADFADECPKPELLAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 AWVWNTHADFADECPKPELLAIR 23 1 P43487;F6WQW2;P43487-2;C9JXG8;C9JJ34;C9JGV6 P43487 RANBP1 Ran-specific GTPase-activating protein 0 175.61 7.9065e-13 2217600000.0 719290.0 671690.0 576220.0 680670.0 642290.0 717170.0 754590.0 705390.0 989850.0 835160.0 False True 715417.4225606319 694046.7956048204 657346.7674059747 766842.752209332 724081.8243489105 667593.7259365902 718087.5988862682 758029.7836978431 745914.7308104524 781859.3737835507 0.9150205862450751 0.8876875035036156 0.8407480800862714 0.9807937052649881 0.9261023767547292 0.8538539644360731 0.9184357481209441 0.9695218975627392 0.9540267160843054 1.0 19.576549620346434 1.7865207028078773 3.5933045456838144 0.9724558659977179 0.9011858096632954 0.43015059611868367 0.037938066707525836 0.2292006540430241 5.600139147603952 0.02061788092237133 0.010534517309469037 61.16749607908708 -1.7865207028078773 -0.07127005633442252 AYAGDKAEEIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYAGDKAEEIGR 12 1 O15020;O15020-2 O15020 SPTBN2 Spectrin beta chain, non-erythrocytic 2 0 75.102 0.01745 0.0 204010.0 208400.0 176840.0 178310.0 186480.0 245920.0 216900.0 197000.0 315630.0 236760.0 False True 202911.63282764162 215336.46801953996 201737.5348791651 200884.027717464 210227.12264644422 228920.1292334123 206407.7183615359 211701.14034573047 237847.2157253151 221649.77409956616 0.9154605893552263 0.9715167493146633 0.9101635032054831 0.9063128015065149 0.9484653142574788 1.032801094264054 0.9312336058092102 0.9551155249571032 1.0730767341927132 1.0 17.7579223665786 2.9881971191007786 23.275371964685 0.9871293330535168 0.9279261942098769 0.4053308126892683 0.04077488880426105 278.1020659765809 548422.6872495844 0.012363203383397496 0.013811196413565272 973.1888379075266 -2.9881971191007786 -0.059203138843639924 AYDLAGSCR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYDLAGSCR 9 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 88.37 0.029849 83385000.0 47929.0 73920.0 63985.0 60528.0 68127.0 68645.0 67241.0 62283.0 94046.0 76980.0 False True 47670.955589412486 76380.38251441647 72993.5318324101 68190.83859392433 76802.56962963492 63899.732722948866 63988.29594443542 66930.87372666578 70869.62345183594 72067.07049410616 0.6614804134894195 1.0598513577801538 1.0128555432037398 0.9462135497723771 1.0657096105483579 0.8866703236976278 0.8878992236775957 0.9287303239575914 0.9833842692083877 1.0 16.137052580944722 4.7496157899978995 24.645256247490767 0.9670313604230766 0.6614801971912934 0.7065795990011944 0.06035503818732666 793.1916682469624 1768217.8444330802 0.015175270537913217 0.22760610455455807 56184.40551844169 -4.7496157899978995 -0.3055511632317832 AYDPDYER ddPTM_BT-474_Trastuzumab_2h_R1 1 AYDPDYER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 0 75.21300000000002 0.067682 0.0 463200.0 599410.0 527550.0 476450.0 454130.0 627430.0 582640.0 491050.0 681170.0 600940.0 False True 460706.1826663579 619360.9994990035 601824.4544531984 536768.5211484809 511960.7636606055 584057.2409113528 554455.4772990561 527694.6445013763 513304.78071036615 562587.4947093823 0.818905835979071 1.1009149782452041 1.0697437467288262 0.9541067410781344 0.910010920034884 1.0381625016621836 0.9855453285279173 0.9379779135936346 0.912399912080388 1.0 19.10171795897483 1.7660237063700333 6.626335865677257 0.9442078050942612 0.9887594813970684 0.028475878019002976 0.07874309452189311 0.5389158906238667 62.97483166940379 0.03724597387788793 0.02032282600066648 58.34769530390831 -1.7660237063700333 0.04455167630280721 AYEDGCK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYEDGCK 7 0 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 108.09 0.017057 479080000.0 731070.0 767210.0 645600.0 595270.0 626650.0 571290.0 791300.0 706480.0 1054000.0 837150.0 False True 727134.0003495126 792746.1210617616 736494.868344204 670631.1209655914 706450.1630544518 531798.0669720074 753021.795940449 759201.1250327498 794255.8228764122 783722.3702798261 0.9277953876573553 1.011513963520926 0.9397394999472075 0.8556998580072995 0.9014035962788909 0.6785541502179276 0.9608272323164445 0.9687118217152318 1.013440285738973 1.0 19.57998315179275 2.0199999482535587 24.997893849322303 0.9841231879335393 0.8871607539565742 0.2709189650961389 0.08120212802962827 363.86712227792486 454794.77814328135 0.032573141801866844 0.02405431027607794 104.71284232849285 -2.0199999482535587 -0.09696243397696502 AYEFAER ddPTM_BT-474_Trastuzumab_2h_R1 8 AYEFAER 7 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ;;;;;;; 206.65 0.0004959 18092771000.0 5812080.0 7317400.0 6891890.0 7097560.0 5924820.0 6513110.0 7081540.0 5787120.0 7376110.0 6512360.0 False True 5780788.40706279 7560955.235538288 7862208.206618236 7996110.368270782 6679310.707840547 6062874.035911797 6738978.856090138 6218984.280799927 5558366.525310188 6096735.60928809 0.9481776441569865 1.240164527393894 1.2895767030868999 1.311539630501458 1.0955552505286488 0.9944459501696766 1.1053421515972615 1.0200514963000196 0.9116955173260716 1.0 22.539605552838736 3.0221390851894405 6.572964554166521 1.0192453501308674 1.2073563587931717 0.4299360132377784 0.10289657070219242 0.1614484756462972 26.07373227431601 0.03071863537202438 0.03616379129293738 1052.2988243343732 -3.0221390851894405 0.18811100866230435 AYEKPPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 AYEKPPEK 8 1 Q12905;B4DY09 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ;;; 82.749 0.017753 3194690000.0 3631620.0 3073390.0 2757390.0 2465380.0 2937610.0 3933730.0 3672660.0 3641870.0 5340270.0 3744110.0 False True 3612067.7614309117 3175685.9282465153 3145606.5443364703 2777496.8552188952 3311697.220921389 3661800.504104386 3494999.4048763462 3913644.832441147 4024232.014451817 3505157.694306158 1.030500786683127 0.9060037251405714 0.8974222613282852 0.7924028239102371 0.9448069130530048 1.0446892332555198 0.9971019023063319 1.1165388760678423 1.1480887210834632 1.0 21.741047920742886 2.6182728901103176 1.8927134823015086 1.0797560676788234 0.9032887860192104 0.5319423081177871 0.06924724026599366 0.25899358130391237 1.8486204393550854 0.028116012180514606 0.025300612771334628 415.21486206216025 -2.6182728901103176 -0.176467281659613 AYEKPPEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYEKPPEKK 9 2 Q12905;B4DY09 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ; 72.652 0.025953 4224500000.0 4529200.0 4823100.0 3781230.0 4087300.0 5115900.0 7816200.0 7171800.0 7436000.0 11901700.0 7646100.0 False True 4504815.290441429 4983633.967874485 4313594.316959653 4604751.760919689 5767379.540685027 7275884.491355713 6824872.63506345 7990912.079242897 8968685.50960929 7158119.351844452 0.6293294466067628 0.6962211333610047 0.6026155900639122 0.6432907212888495 0.8057115643369275 1.01645196646252 0.9534449342905782 1.1163423919697366 1.2529388053998154 1.0 22.771149168244524 2.7496398215721896 1.1887597126234875 1.1123765114149318 0.631125950917081 0.8801668258535593 0.07486843386820824 0.14551258885575064 0.426383862088238 0.03611484031670897 0.03410776798298905 561.8751455419643 -2.7496398215721896 -0.48125056049785075 AYEVLKDEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYEVLKDEDLR 11 1 Q8IXB1-2;Q8IXB1;Q71S60;A0A087WXH7;E7EP04;A0A494C1G5;Q8IXB1-3 Q8IXB1-2 DNAJC10 DnaJ homolog subfamily C member 10 0 83.182 0.015415 240650000.0 535580.0 646850.0 532050.0 567250.0 562640.0 589000.0 596280.0 578540.0 784430.0 570670.0 False True 532696.4967885326 668380.0112209179 606958.015338498 639063.7918385467 634288.8689714468 548283.8163568625 567435.6583891959 621713.5925665945 591117.7373234764 534249.3520248324 0.9970933886388175 1.2510637751599014 1.1360949957881954 1.1961901112588387 1.187252481575241 1.0262695018325034 1.0621176352176858 1.1637142660262818 1.10644539873209 1.0 19.027153727521004 2.756559867829819 24.90809804067369 1.08767235733589 1.1603573969366607 0.214688478527294 0.07464809214013604 1337.3821326462355 1850720.0263960771 0.02221338397417163 0.023522924107865807 570.8997697220304 -2.756559867829819 0.07268503960077077 AYFETEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYFETEKK 8 1 P15170-2;P15170-3;P15170;H3BR35;H3BSV8 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 84.213 0.028239 650380000.0 835620.0 706370.0 498720.0 569080.0 565980.0 763290.0 719240.0 735970.0 1175500.0 804720.0 False True 831121.1147661097 729881.0984403174 568935.4410480511 641125.4696509127 638054.1981737149 710525.5588913923 684447.6134363812 790891.8185799358 885813.7758930003 753362.0806445454 1.10321601806005 0.9688317439814086 0.7551952184284263 0.8510190333742207 0.8469422799032069 0.9431395303085817 0.908524109483711 1.0498163351987155 1.1758141253076273 1.0 19.522983893648824 1.6636784945743508 3.52086465822189 1.095025190802669 0.9028133515941895 0.3880684737302511 0.0946402221675556 0.19013142499084384 5.546219104483178 0.0580335345170217 0.026111365913768145 46.09761904899848 -1.6636784945743508 -0.1922118392084794 AYGELPEHAK ddPTM_BT-474_Trastuzumab_2h_R1 5 AYGELPEHAK 10 0 P47813;O14602;X6RAC9;A6NJH9 P47813 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal 0 ;;;; 132.78 0.0002146 9676200000.0 17639080.0 18274590.0 15606790.0 15497280.0 15146790.0 19144360.0 18844420.0 17103550.0 25008210.0 18905800.0 False True 17544113.15316604 18882848.68092706 17804090.37534952 17459234.059028067 17075643.924441967 17820955.45417603 17932843.411924824 18379903.7510671 18845271.73834549 17699215.657930285 0.9912367582969842 1.066874885637457 1.0059253878502943 0.9864411167398431 0.9647683973380526 1.0068782593872287 1.013199893063615 1.0384586586373292 1.0647518004506433 1.0 24.077182092797397 1.8401895340278025 3.2584794639248345 1.038708529205024 1.0044311208145391 0.18250291802975505 0.02856827463558835 0.40305949027191684 7.456226530070555 0.01576525781195405 0.008210097399877912 69.21329644576207 -1.8401895340278025 -0.034277408390484876 AYGSELYGPGRPLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYGSELYGPGRPLSPR 16 1 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 1 AYGSELYGPGRPLS(1)PR;AYGSELYGPGRPLS(1)PR 128.66 3.6081e-05 794520000.0 443100.0 605860.0 521850.0 573210.0 526180.0 557540.0 610010.0 513660.0 581770.0 531210.0 True False 440714.39883303765 626025.6838498967 595321.9439984862 645778.3272274543 593185.9040867982 518998.5721079881 580501.4858355031 551991.9175126291 438400.5788186061 497307.7230082378 0.886200592597146 1.2588296036567417 1.197089682012891 1.2985487603552803 1.1927944744123191 1.0436165538884885 1.1672882985287707 1.1099604771339646 0.88154789989325 1.0 18.923779310281226 1.3711723826566566 4.5806169169988324 0.9433474308031594 1.1568247415070638 0.3437920502740309 0.11276944803061285 0.22267339875907918 7.005418545828382 0.08029642233921483 0.027913523384446953 23.505656357007606 -1.3711723826566566 0.2134773107039044 AYHEQLSVAEITNACFEPANQMVK ddPTM_BT-474_Trastuzumab_2h_R1 4 AYHEQLSVAEITNACFEPANQMVK 24 0 P68363;P68363-2;C9JDS9;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 ;;; 296.62 5.498999999999998e-62 2396390000.0 1424410.0 1430190.0 1335240.0 1289320.0 1354700.0 1596220.0 1561950.0 1478790.0 1944340.0 1716690.0 False True 1416741.1348268276 1477793.0095818876 1523230.1858858662 1452547.7798030411 1527213.0150640167 1485877.0684977113 1486392.51127156 1589144.8189434663 1465183.459821181 1607129.3744677496 0.881535212618477 0.9195233644903692 0.9477956224839278 0.903815089736691 0.9502738480962681 0.9245534877923598 0.9248742104311451 0.9888095160165687 0.9116773565951537 1.0 20.61605464045929 7.999999212876338 0.012907814547949493 1.7343698596258816 7.62332414129023e-10 0.48284659833557364 0.025264819721989344 6038.5389097461875 6.0204021959919904 333.57092284933685 489.1353637239004 99999818.75824314 -7.999999212876338 -1.7343698588635492 AYHLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYHLQK 6 0 P61927;D6RG19;D6R9X9 P61927 RPL37 60S ribosomal protein L37;Ribosomal protein L37 0 132.11 0.015041 1346000000.0 2599700.0 3037200.0 2937500.0 2515400.0 2095600.0 2587300.0 2906300.0 2407000.0 4106200.0 2803700.0 False True 2585703.504053825 3138291.365973827 3351074.466792282 2833849.3820902295 2362462.2384056672 2408446.040849086 2765711.1658558417 2586622.562498345 3094282.0302610295 2624765.4656316633 0.9851179230718666 1.195646394722197 1.2767138666943063 1.0796581329632242 0.9000660323139114 0.9175852366182671 1.0536983978453325 0.9854680718590836 1.178879435430386 1.0 21.32375708669847 3.4777973489532696 24.997359411133356 1.002025768156911 1.1603710863150045 0.30772881732666346 0.09861297763803124 27.04863155008874 1000099.705081766 0.027323587579397287 0.03743154635841105 3004.673930672026 -3.4777973489532696 0.1583453181580936 AYIAYELNSVQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYIAYELNSVQHR 13 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 133.15 6.6215e-06 0.0 186350.0 248900.0 245950.0 252790.0 283320.0 233110.0 250090.0 203760.0 227110.0 248800.0 False True 185346.71230543143 257184.4860367724 280577.6221642765 284793.1880808576 319399.1226307945 216995.65438191558 237992.19126342345 218965.6058723152 171141.78361808546 232921.37099160362 0.7957479878998001 1.104168694104258 1.2046023126593686 1.2227009778811748 1.3712744402586752 0.9316262112751255 1.0217705238906678 0.9400837928272735 0.7347620481946021 1.0 17.82948349015185 2.583559807523586 24.999935736982994 0.9314810797468437 1.1464955223255973 0.32585504432635404 0.15366982151754363 37.91285335993087 8885.6736671564 0.05133184020250021 0.0483961128403425 383.3185242924499 -2.583559807523586 0.21501444257875357 AYIDSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYIDSFR 7 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ; 140.12 0.0061558 277230000.0 376120.0 505460.0 420770.0 446990.0 397090.0 448800.0 409620.0 349740.0 518370.0 458190.0 False True 374095.0117108601 522283.9305429782 480010.7586015961 503578.88816908223 447657.05776317307 417775.5123615618 389805.1156996421 375839.3747437354 390624.65930213087 428947.9219238054 0.8721222148205467 1.217592868151841 1.119042042327136 1.1739860771689055 1.0436163340189606 0.9739539254272733 0.908746949866058 0.8761888227785757 0.9106575398482012 1.0 18.710442976840017 2.7023153829117694 2.190767463830572 0.9108921300786844 1.105537362882021 0.41574867730222065 0.09090492009025568 0.2603263992123282 2.464869554140394 0.03165126799678351 0.030632451506943412 503.8663817069253 -2.7023153829117694 0.19464523280333668 AYINKVEELK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYINKVEELK 10 1 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 ; 149.96 2.0449e-05 2149700000.0 4364500.0 3447000.0 2925500.0 2815000.0 2396000.0 3612000.0 3513200.0 3301000.0 4999500.0 3770600.0 False True 4341002.016941532 3561731.3112445013 3337384.971098158 3171378.711371546 2701116.3977953717 3362310.941733426 3343253.0942727 3547337.382138363 3767440.214867769 3529957.079826932 1.2297605661410376 1.0090013081459697 0.945446331393294 0.8984184905520249 0.765198085050882 0.9525075987321281 0.9471087094454458 1.0049236582537382 1.0672764936429426 1.0 21.7512192114333 4.73857208566449 2.3900266662148195 0.943212377682019 1.2972729846963218 0.5590989223198646 0.07502016281662453 0.44304330433932054 3.064174462586763 0.020380818954776017 0.32465468269854564 54773.70086552186 -4.73857208566449 0.35406060701430275 AYINKVEELKK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYINKVEELKK 11 2 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 ; 127.17 0.00016431 2176400000.0 5733700.0 3803480.0 3461480.0 2943030.0 2718920.0 4540010.0 4487300.0 4046890.0 6968600.0 4714300.0 False True 5702830.396273955 3930076.5325477826 3948826.2962764814 3315617.296244332 3065158.3456985774 4226169.794733986 4270232.155849328 4348889.481491031 5251281.904455951 4413429.337884713 1.292154005349326 0.8904813539920424 0.894729697466753 0.7512564589588411 0.6945071759475953 0.9575705129017705 0.9675542144050692 0.9853764835794074 1.1898416180313895 1.0 22.073468668668077 1.6759698285006064 1.8522067299527036 1.0883846673578947 0.8980966137173159 0.15144682936103648 0.15647918789366527 0.5640837317066432 3.9868552351884534 0.12085216147919328 0.04636760347862521 47.42090396545508 -1.6759698285006064 -0.19028805364057888 AYIVEWR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYIVEWR 7 0 Q93034 Q93034 CUL5 Cullin-5 0 ; 100.82 0.022129 111333000.0 268340.0 326460.0 276420.0 323480.0 294150.0 314260.0 267820.0 260770.0 358020.0 306910.0 False True 266895.28725537704 337326.02375076263 315337.5333142893 364432.53483284824 331608.2589363557 292535.94588846806 254864.5234282457 280229.98156322906 269790.76822221384 287322.7410411295 0.9289041524811699 1.1740317613859714 1.0975028714108972 1.2683734448317847 1.1541316142772244 1.0181440732064864 0.8870322011572432 0.9753143122183804 0.9389816039085955 1.0 18.132312658357954 2.559971388037971 3.9927084503305084 0.9488715031879488 1.1328830782426544 0.4872975808477207 0.08426083383099839 0.18777697543289318 5.549847032776875 0.028336754298062178 0.026033893210494145 363.0541354394254 -2.559971388037971 0.18401157505470567 AYLLIEEDIRDLAASDDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYLLIEEDIRDLAASDDYR 19 1 H7C1J2 H7C1J2 DNTTIP1 0 80.975 0.0059597 19694000.0 11980.0 14915.0 11003.0 18761.0 12506.0 15340.0 15186.0 9950.0 12597.0 17123.0 False True 11915.501011103122 15411.436758692105 12552.126760209536 21136.140676391322 14098.564971130587 14279.581906475843 14451.395163846406 10692.519525076237 9492.638141151961 16030.195480262166 0.7433160141917527 0.9614004256946254 0.7830301742523886 1.3185204573715934 0.8795005019427257 0.890792749474463 0.901510850671801 0.6670236515981255 0.5921723258359614 1.0 13.96850439809776 1.8448931143879297 4.962081923640501 0.7217274534274729 0.9361459696934599 0.16086986604778886 0.1761566258705074 0.3273812444385249 11.648622124468922 0.08007547901080847 0.046132839676736336 69.96697768308161 -1.8448931143879297 0.21441851626598696 AYLPVNESFGFTADLR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYLPVNESFGFTADLR 16 0 P13639 P13639 EEF2 Elongation factor 2 0 ; 204.13 6.045e-11 712650000.0 93176.0 160228.0 119575.0 111314.0 110882.0 99940.0 122593.0 106149.0 130231.0 109231.0 False True 92674.35076882689 165561.09212012877 136410.12063546822 125406.34098671857 125002.16545089566 93031.38303345471 116662.70823926124 114070.37739370018 98137.31505599427 102259.78406263598 0.9062639004993611 1.6190244643849392 1.3339566662092162 1.226350535904759 1.2223980971280906 0.9097553245024582 1.1408464168846983 1.1154959737038952 0.9596863122249836 1.0 16.641879359103612 2.984267130457099 3.4022218773450215 1.0484484467224775 1.2986635498733137 0.3028562233161196 0.17545400960480664 0.2924508194906768 7.094045227041969 0.052569926980368935 0.05992217851934083 964.4220481677224 -2.984267130457099 0.25021510315083617 AYNADFDGDEMNAHFPQSELGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYNADFDGDEMNAHFPQSELGR 22 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 0 158.94 2.0199000000000003e-11 174470000.0 117330.0 133250.0 118360.0 117870.0 126210.0 139520.0 115280.0 124310.0 148220.0 138510.0 False True 116698.30831658862 137685.1456986739 135024.05919643756 132792.32991451654 142282.09539472195 129875.31079475312 109703.4659876341 133586.64343338954 111693.16704624466 129670.1732156228 0.8999626160947295 1.0618104555912282 1.0412884925503418 1.02407767816969 1.0972615511057222 1.0015819951037561 0.846019275421288 1.0302033237146544 0.8613635987091267 1.0 16.984487142904406 2.4639875064136847 24.977095360035026 0.9411798504269088 1.0299611368951835 0.2684948685151475 0.07029752641684718 299.40280416690234 569385.0632913578 0.023046706452569402 0.019291996475359 291.06333850835625 -2.4639875064136847 0.08878128646827477 AYNYVAQEVDDYHAFQTLTHIYNK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYNYVAQEVDDYHAFQTLTHIYNK 24 0 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ; 258.9 3.4388999999999995e-44 1133360000.0 502200.0 619440.0 528930.0 546340.0 563310.0 573480.0 591940.0 453980.0 685590.0 532000.0 False True 499496.21099966526 640057.6859406129 603398.7464580241 615506.5879824978 635044.1895000462 533836.6774267119 563305.6007696063 487858.2928637304 516635.53093533183 498047.30453188485 1.0029091743988903 1.285134323821316 1.2115289872418027 1.2358396127874098 1.275068018080983 1.0718593847796556 1.1310283092467648 0.9795420804902637 1.0373222106300084 1.0 18.9259232504098 2.2187626469926345 1.515596790873102 1.0075892618307525 1.2057398481067656 0.48313830279393155 0.08201292937468427 0.31361970085545704 1.4117492410741284 0.04524353546747312 0.026556628275596007 165.48652902041124 -2.2187626469926345 0.19815058627601312 AYPLADAHLTK ddPTM_BT-474_Trastuzumab_2h_R1 5 AYPLADAHLTK 11 0 A0A3B3IUA2;B1AHD1;P55769 A0A3B3IUA2 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed 0 ;;;; 207.29 2.3482e-08 2797936000.0 4050960.0 4730600.0 4310480.0 3942510.0 3788940.0 4558960.0 4668790.0 4206090.0 6163980.0 4632600.0 False True 4029150.081463967 4888055.161291914 4917358.11663619 4441631.3617653465 4271439.050193147 4243809.825837494 4442942.791190206 4519969.793892256 4644949.722100332 4336943.501831604 0.9290298754785143 1.1270737465746468 1.1338303380155774 1.0241386266363697 0.9848961713218554 0.9785255039742211 1.0244410122736982 1.042201677744558 1.071019191312649 1.0 22.048247218391392 4.775857291775489 22.97197220714601 1.0418216161619425 0.9290290764229343 0.3079989921112818 0.05118290856766151 9827.465997916108 6052640.847180528 0.013287349036893981 2.915545573243534 59683.91343133599 -4.775857291775489 -0.11279253973900816 AYPVSGCFDYLSEDLPDTIHIGGR ddPTM_BT-474_Trastuzumab_2h_R1 3 AYPVSGCFDYLSEDLPDTIHIGGR 24 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 0 ;; 258.5 6.1599e-44 593548000.0 240705.0 318136.0 250309.0 291425.0 283963.0 268010.0 249754.0 249081.0 290254.0 272811.0 False True 239409.07102483962 328724.9644427267 285550.3314751694 328319.37511952175 320124.004869435 249483.0995276789 237672.44486706777 267668.68902769004 218724.7909043363 255399.9684147518 0.9373888043559031 1.287098688708137 1.1180515535986892 1.285510633213368 1.2534222570833518 0.9768329302317519 0.9305891709473676 1.0480372832036324 0.8564010099999011 1.0 17.962398821059736 2.7249800766519034 23.34839187905611 0.9695309641036214 1.1852820312812697 0.5027857995291866 0.10605954110783894 262.67125308027903 451597.0811520748 0.03267339747795767 0.030990603538435673 530.8600903572576 -2.7249800766519034 0.21575106717764836 AYQDQIS(ph)PVPGAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYQDQISPVPGAPK 14 0 E7ER32;A0A087X287;A0A087WU73;A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6 E7ER32 MKL1;mkl1 MKL/myocardin-like protein 1 1 AYQDQIS(1)PVPGAPK 147.75 8.3356e-06 139840000.0 352040.0 305260.0 287820.0 301680.0 293630.0 333290.0 318840.0 278800.0 400980.0 298230.0 True False 350144.65575532085 315420.3945664333 328342.55422371294 339872.657068053 331022.0400186367 310250.4467802696 303416.4911129192 299605.4717177142 302163.8518567211 279196.7060724516 1.2541145656083 1.129742535302625 1.1760258881367605 1.217323305310973 1.1856230135205692 1.1112253118765647 1.086748104521629 1.0730981605490952 1.0822615213028677 1.0 18.090922395350525 2.040410025769863 0.562881570511303 1.0123279771176614 1.202727904954481 0.7783131061939428 0.03423081740669113 0.39016351550985945 0.2556993348687961 0.03267492406315653 0.022838592361293698 109.75138911212677 -2.040410025769863 0.19039992783681958 AYRPPS(ph)GEK ddPTM_BT-474_Trastuzumab_2h_R1 6 AYRPPSGEK 9 1 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK 98.407 0.0036547 7767200000.0 3049840.0 2721050.0 2410780.0 2413140.0 2292550.0 2845040.0 2683510.0 2746150.0 4058230.0 2719360.0 True False 3033420.00030908 2811618.5043405415 2750196.869124595 2718643.276575185 2584492.653491557 2648369.081303782 2553698.3692962886 2951081.657667148 3058133.5939959595 2545808.11663877 1.19153520663376 1.1044110064558679 1.0802844295883853 1.0678900969820968 1.0151953859365734 1.0402862116727096 1.0030993116118807 1.1591924930946722 1.2012427700299788 1.0 21.27969225344717 4.767946508410888 1.98732121085343 1.0740161167356963 1.2321004949154608 0.2553754651667576 0.06213351019732738 1.2860751645938335 5.118931273668849 0.01691141323675936 0.3803185895861637 58606.59749459855 -4.767946508410888 0.1580843781797645 AYS(ph)FCGTVEYMAPEVVNR ddPTM_BT-474_Trastuzumab_2h_R1 4 AYSFCGTVEYMAPEVVNR 18 0 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3;B4DG22;B1AXG1;B7ZB17;P51812;Q9UK32-2;Q9UK32 E9PGT3;B4DG22;Q9UK32-2 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR 331.48 6.7874e-75 2076970000.0 1184990.0 847510.0 764020.0 853080.0 717700.0 888170.0 831630.0 852120.0 1177440.0 1001060.0 True False 1178610.1455047661 875718.8580193865 871587.3750191114 961079.8405317367 809094.8408588221 826772.8984272925 791400.8797648882 915709.5213776842 887275.6888876681 937171.4937494163 1.257624835332333 0.9344275448624976 0.9300190849084438 1.025511175853918 0.8633370159625878 0.8822002204949241 0.8444568417234587 0.9770992048788557 0.9467591521994271 1.0 19.83795354638027 4.738602235380184 7.030913554127558 0.9297710750110484 1.2623878153924615 0.755074797935878 0.05530088112422117 0.051291083476305954 19.714622455113464 0.013321206537385845 0.08112731496843613 54777.50351303666 -4.738602235380184 0.3326167403814131 AYS(ph)GSDLPSSSSGGANGTAGGGGGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 AYS(0.997)GS(0.003)DLPSSSSGGANGTAGGGGGAR;AYS(0.997)GS(0.003)DLPSSSSGGANGTAGGGGGAR 229.98 1.224e-40 267360000.0 203036.0 223323.0 215537.0 200810.0 209323.0 263004.0 269355.0 215229.0 258135.0 255418.0 True False 201942.8767354201 230756.1710533957 245882.73611881156 226232.5254104869 235979.04329537536 244823.15252482204 256325.26961397624 231290.48089071692 194521.08808178612 239117.00456564876 0.8445358250545388 0.9650345506483725 1.0282946483268833 0.9461164245572319 0.9868768794759141 1.0238634135181577 1.0719658774564609 0.9672690627370958 0.8134975111248561 1.0 17.867357203943545 4.722881368612798 4.082123089613707 0.9838818131430045 0.8345603604871528 0.27491942173088246 0.06509627382722623 0.2722821903768716 9.77771532603031 0.01574567388179299 0.11654234880140377 52830.092198403916 -4.722881368612798 -0.14932145265585173 AYS(ph)NSIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYSNSIVR 8 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 AYS(0.96)NS(0.04)IVR;AYS(0.988)NS(0.012)IVR 110.18 0.0036458 812020000.0 830680.0 738500.0 709930.0 811460.0 723220.0 793390.0 802870.0 782310.0 1012150.0 878060.0 True False 826207.7111772242 763080.5260673228 809881.9731778211 914190.752799131 815317.7801392174 738544.8167391712 764032.1108387568 840689.9446896882 762719.1946151428 822021.4590550129 1.0050926311911903 0.9282975738182699 0.98523215453384 1.1121251674500992 0.9918448857484792 0.8984495582246653 0.929455189305009 1.0227104602063994 0.9278580093176115 1.0 19.648816530713784 2.9861009773110516 24.617944695776725 0.9588336491501827 1.006858889309941 0.174143262731984 0.05382141113525874 1108.3417063899751 1963098.496180507 0.01721185153553519 0.01896119519373035 968.5030156079664 -2.9861009773110516 0.0480252401597584 AYS(ph)PEYR ddPTM_BT-474_Trastuzumab_2h_R1 8 AYSPEYR 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR 135.79 0.0031919 14785680000.0 13488250.0 15154490.0 13440160.0 14552030.0 14014160.0 15083020.0 15137570.0 13426470.0 15958640.0 15215910.0 True False 13415630.76068545 15658898.038567362 15332417.704035072 16394315.505946767 15798780.207565922 14040366.329010008 14405307.90796697 14428421.369633218 12025847.006820146 14244817.596804043 0.9417902805365068 1.0992698174022657 1.0763505815248235 1.1508968363080327 1.1090896812262816 0.9856473228663941 1.0112665753753796 1.0128891627836898 0.8442261141706902 1.0 23.76393381245308 2.025364182802505 1.1836502471870383 0.9426372806705154 1.0760186631160364 0.3631951315705032 0.06825188399539159 0.5185724253257159 1.3466696488363898 0.050718105775536385 0.024034655630041722 106.01423475157068 -2.025364182802505 0.133381382445521 AYSDHDDRWETK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYSDHDDRWETK 12 1 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 0 ; 229.97 4.1675e-12 783890000.0 628940.0 762560.0 674740.0 752780.0 705020.0 835100.0 856960.0 795440.0 1047260.0 862310.0 False True 625553.8569218036 787941.3486227451 769737.5270547838 848081.8708157269 794800.1180190695 777371.5026139502 815505.5708948909 854799.7719624765 789176.8055650403 807276.6375392668 0.7748940423057591 0.9760487446094571 0.9534990748661952 1.0505467783644058 0.984544926806964 0.9629555303167533 1.0101934491510958 1.0588684624493399 0.9775791455709678 1.0 19.622703615369613 5.411493929385098 1.2684663767555302 1.007877547891045 9.376092243288569e-21 0.8086852173527205 0.03254214774929267 2.757982435412075 1.1209034636563613 0.009245824981765405 5.498667191109823 257925.29111013594 -5.411493929385098 -1.007877547891045 AYSEAHEISK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYSEAHEISK 10 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 99.568 0.004606399999999999 8363700000.0 12731000.0 13642000.0 12271000.0 12478000.0 11518000.0 13619000.0 13683000.0 13829000.0 16199000.0 14052000.0 False True 12662457.71054706 14096065.723236868 13998650.138555948 14057713.52060182 12984749.02746538 12677550.585677626 13021101.015863981 14860990.202239128 12206973.505479123 13155189.329477541 0.9625446957402285 1.071521311491204 1.0641162044842958 1.0686059446595682 0.987043873125395 0.9636919901464553 0.9898071924124192 1.129667527394631 0.9279207770979244 1.0 23.64912867613098 4.767594015164152 22.185211912079566 1.0293959383807287 0.9625442304181454 0.07742505116290666 0.05780239330858856 5210.790068080119 3981402.7198639484 0.014013823249675126 1.1204673887537058 58559.04900090035 -4.767594015164152 -0.06685170796258333 AYSGS(ph)DLPSSSSGGANGTAGGGGGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 AYS(0.321)GS(0.676)DLPS(0.001)S(0.001)S(0.001)S(0.001)GGANGTAGGGGGAR;AYS(0.018)GS(0.982)DLPSSSSGGANGTAGGGGGAR;AYS(0.001)GS(0.999)DLPS(0.001)SSSGGANGTAGGGGGAR 466.09 3.9018999999999965e-236 2209970000.0 739593.0 775604.0 807283.0 755034.0 732020.0 995800.0 877800.0 732284.0 903840.0 914115.0 True False 735611.1134645079 801419.5102774815 920941.429370375 850621.2269846189 825238.4079775308 926962.6898610601 835337.4604783602 786930.7505428062 681100.7428355005 855775.3980867738 0.8595843197982638 0.936483465251731 1.0761485214803914 0.9939771917799017 0.9643165833260533 1.0831845504479765 0.9761176382797332 0.9195529017334676 0.7958872671009389 1.0 19.70687267925895 1.652174898063218 3.8319399880867873 0.8877197021235579 0.9895389751288519 0.1817359358998003 0.07616769246306732 0.2567928476682557 8.855527876469738 0.04387093987023002 0.01990723759895732 44.89261440263981 -1.652174898063218 0.10181927300529403 AYSPELIVHPVLDSPNAVHEVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYSPELIVHPVLDSPNAVHEVEK 23 0 Q8IW45-2;Q8IW45 Q8IW45-2 CARKD ATP-dependent (S)-NAD(P)H-hydrate dehydratase 0 ; 161.8 1.0037000000000002e-11 323960000.0 177952.0 175995.0 165902.0 155863.0 160911.0 186239.0 187058.0 139795.0 241730.0 185059.0 False True 176993.9262043259 181852.88718377583 189259.55955396558 175595.2398190064 181402.06205578058 173364.73628944968 178009.28990904667 150227.2127646266 182158.88051604875 173248.3761830191 1.021619538975361 1.0496657526629107 1.0924175090335755 1.013546237417591 1.0470635630324636 1.0006716375009925 1.0274802790705417 0.8671204664332726 1.0514319644971253 1.0 17.402482304815553 1.9658827568766186 24.816317536208825 0.9553898818391792 1.0377415857584464 0.23629504104344046 0.04944056221365897 583.144383562372 424168.7908864871 0.019655103411580988 0.012695794155248729 92.4448574014625 -1.9658827568766186 0.08235170391926727 AYSSFGGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 AYSSFGGGR 9 0 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 127.46 0.0030604 0.0 334420.0 427170.0 470800.0 422120.0 259460.0 320210.0 418510.0 109620.0 571110.0 301220.0 False True 332619.51987755497 441388.0952202818 537084.5477330415 475560.34871906094 292500.6930600946 298074.6363932615 398265.072436544 117800.4010390811 430367.59298192366 281995.8817125835 1.1795190690641655 1.5652288697965966 1.9045829480603906 1.6864088433878717 1.037251648086896 1.057017693247967 1.4123081160542077 0.4177380191642157 1.5261485039010745 1.0 18.10531456799628 3.232915492515282 24.686959022961553 1.0259642985941013 1.6055022505821788 0.3655516325953658 0.32407247259092775 112.98564739867663 494102.9303489955 0.09383142017720321 0.11515366510105005 1709.6826029782517 -3.232915492515282 0.5795379519880774 AYSSFGGGRGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 AYSSFGGGRGSR 12 1 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 1 AYSSFGGGRGS(1)R 69.258 0.030559 176900000.0 111750.0 107220.0 116600.0 130880.0 122540.0 125860.0 118310.0 96876.0 154380.0 137730.0 True False 111148.35041659222 110788.75288414126 133016.26649463162 147449.39458057124 138144.74264851605 117159.59444257169 112586.89331191023 104105.37904636047 116335.11758601583 128939.95348341468 0.8620163681917958 0.8592274922636126 1.0316140412734156 1.143550859117825 1.0713881843170152 0.9086368598515255 0.8731730566848086 0.8073942655776696 0.9022425900051205 1.0 16.97633984256741 2.5370368680952478 6.308936358814022 0.8737441547386993 0.9965016322602679 0.19393189467937666 0.09304521840668444 0.33301312208438455 27.505920026752573 0.0337259648919333 0.03142623561028627 344.3791645331975 -2.5370368680952478 0.12275747752156863 AYT(ph)HQVVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYTHQVVTR 9 0 D6RAD4;P50613;D6REC6;D6R9G1 D6RAD4 CDK7 Cyclin-dependent kinase 7 1 AY(0.002)T(0.998)HQVVTR;AYT(1)HQVVTR 91.914 0.038378 1137370000.0 625910.0 373783.0 223712.0 328225.0 583370.0 518240.0 295711.0 504920.0 155584.0 449310.0 True False 622540.1701051384 386224.14119840483 255208.7050604378 369778.2513463322 657658.7115951095 482415.28860573913 281406.329204279 542599.6943318082 117242.40791878923 420634.6511263563 1.4800021073825678 0.918193829643353 0.6067229705804112 0.879096028717931 1.5634915236632576 1.146874817169602 0.6690041546761352 1.2899548167961425 0.2787274125059428 1.0 18.682208176025796 1.2493104409536582 24.99994439774028 0.6393635508867895 1.0535261827691156 0.2015848551179098 0.3410142954842154 300.8643641303946 699704.9347860677 0.22969889014102812 0.08202710528780814 17.754581545621747 -1.2493104409536582 0.41416263188232605 AYT(ph)PPPPLGPHPNLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYTPPPPLGPHPNLGK 16 0 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 AYT(1)PPPPLGPHPNLGK 132.79 0.0001369 516600000.0 484540.0 398900.0 377720.0 358080.0 379370.0 485510.0 485730.0 443090.0 730510.0 502080.0 True False 481931.29047745455 412177.145359858 430899.69279890455 403412.8912852306 427680.5207978414 451947.8364676069 462233.3842312071 476155.62576543057 550485.5988324938 470036.8245476858 1.0253053916386545 0.8769039441888284 0.9167360306579325 0.8582580560011077 0.909887265129485 0.9615158065594417 0.9833982362467283 1.0130177060566112 1.171154194912757 1.0 18.842414262101983 1.8761219090748527 1.4402962381063902 1.0786290471998656 0.9154577369978604 0.5266041024805863 0.059227729367034916 0.2963771032163923 1.1495423980941282 0.041945391259019305 0.018074866833642997 75.18339087033264 -1.8761219090748527 -0.16317131020200526 AYT(ph)PVVVTLWYR ddPTM_BT-474_Trastuzumab_2h_R1 4 AYTPVVVTLWYR 12 0 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12 P21127-2 CDK11B Cyclin-dependent kinase 11B 1 AYT(1)PVVVTLWYR;AYT(1)PVVVTLWYR;AYT(1)PVVVTLWYR;AYT(1)PVVVTLWYR 232.6 7.5426e-12 4373174000.0 921059.0 838425.0 739942.0 709002.0 618677.0 803676.0 843772.0 725588.0 1110366.0 751523.0 True False 916100.1206832747 866331.4692863849 844119.4019088403 798761.5805043875 697461.8487641258 748119.7697698101 802955.5248379434 779735.0610212081 836731.1774421161 703560.1587287886 1.3020920944962389 1.2313537919084216 1.1997828351082556 1.1353138329316592 0.9913322124782032 1.0633344718119528 1.1412748645243713 1.1082706309437054 1.1892816372006403 1.0 19.424314262488547 3.9734756629802614 1.7392385388003688 1.091631656901236 1.2783317854008647 0.6160967122292587 0.05848175789333206 0.26873953348447505 1.553714265896567 0.017049162667458036 0.05046722764891542 9407.531105812735 -3.9734756629802614 0.18670012849962858 AYT(ph)PVVVTQWYR ddPTM_BT-474_Trastuzumab_2h_R1 4 AYTPVVVTQWYR 12 0 Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 Q5QPR3 CDK11A Cyclin-dependent kinase 11A 1 AYT(1)PVVVTQWYR;AYT(1)PVVVTQWYR;AYT(1)PVVVTQWYR;AYT(1)PVVVTQWYR 194.59 1.4819000000000003e-05 899640000.0 1203150.0 998770.0 974770.0 931260.0 809548.0 994790.0 1024380.0 942320.0 1500270.0 1057040.0 True False 1196672.374082532 1032013.4556807857 1112009.1431472732 1049157.42051576 912639.139233074 926022.5087837741 974826.8258883824 1012640.7034040048 1130548.5610880419 989578.802222526 1.2092744624226874 1.0428815303672172 1.1237196478438878 1.060206037315497 0.9222500898193748 0.9357743988694899 0.9850926714466682 1.0233047647440339 1.1424543033348202 1.0 19.916455071097108 5.465774365807817 0.7578114869822629 1.0063489612111571 1.6196774170843535 0.43099441475134703 0.06575864827183704 7.21538002770002 1.4244767642057616 0.024729308310562866 4.848403886889487 292263.355266181 -5.465774365807817 0.6133284558731964 AYTDELVELHR ddPTM_BT-474_Trastuzumab_2h_R1 2 AYTDELVELHR 11 0 Q03111 Q03111 MLLT1 Protein ENL 0 ; 199.68 4.9438e-08 299738000.0 291178.0 346253.0 316239.0 328469.0 303889.0 328463.0 312115.0 302998.0 337090.0 309889.0 False True 289610.3300009172 357777.8217906414 360762.7024013367 370053.141721315 342587.4628587802 305757.1259287336 297016.8050549134 325609.24935266824 254018.68627458258 290111.6187106789 0.9982720833036969 1.2332419617686678 1.2435306934780725 1.2755543654746202 1.180881566830435 1.0539292679403427 1.0238018262588817 1.1223585280718806 0.8755894969098398 1.0 18.146248549774917 2.7179259800778715 3.67848927971541 1.0287951796895367 1.198724284121886 0.4675247774749818 0.09080340503544321 0.2227169607905654 6.609404751824377 0.03010323515236538 0.029610865216394125 522.3071608584929 -2.7179259800778715 0.1699291044323492 AYVFER ddPTM_BT-474_Trastuzumab_2h_R1 6 AYVFER 6 0 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PPU6;A0A1W2PSE4;A0A1W2PS70;A0A1W2PNX7 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 ;;;;; 118.42 0.050903 2864160000.0 1343480.0 2022920.0 1986260.0 1828710.0 2026630.0 1832830.0 1555950.0 1542870.0 1711960.0 1548050.0 False True 1336246.8529546596 2090251.669319035 2265908.143118586 2060224.4984981378 2284709.3177228826 1706130.7761177404 1480682.7541937851 1658006.7939351131 1290070.397088712 1449252.1236477147 0.9220251129191896 1.4422967786018819 1.5635016890058977 1.4215776985115798 1.5764747075011025 1.1772491123376596 1.0216874828287024 1.1440430321826753 0.8901628474703573 1.0 20.466877168977504 2.511498128259408 4.995971392192201 1.04327732233249 1.4002183374416581 0.48212088271268083 0.18032008326600577 0.17685500315671024 11.180318284973875 0.06106202832327903 0.055313778282198384 324.7118427080539 -2.511498128259408 0.3569410151091681 AYVHEFK ddPTM_BT-474_Trastuzumab_2h_R1 6 AYVHEFK 7 0 Q9H4A4;A6NKB8;C9JMZ3;H7C2T3 Q9H4A4 RNPEP Aminopeptidase B 0 ;;;;; 108.09 0.0073317999999999986 2779350000.0 6358190.0 6605840.0 5853760.0 5829290.0 5604500.0 6785970.0 6878670.0 6392040.0 8660660.0 6998100.0 False True 6323958.21150132 6825711.391085395 6677918.5262059625 6567277.516309423 6318199.8545259405 6316871.86635515 6545922.453028797 6869046.482921442 6526356.389898329 6551475.266625165 0.9652723934893148 1.0418586827088023 1.019299967478307 1.002412013942075 0.9643934529849197 0.9641907523538793 0.9991524330978314 1.0484732374575332 0.9961659205439121 1.0 22.643388379820554 1.9730948076616734 24.45099440050736 1.0211524410298345 0.9943162118258132 0.10141930450459269 0.027229859841574083 1053.8415453605146 957711.6894597651 0.011808573272146702 0.007647479684029282 93.99284771019379 -1.9730948076616734 -0.02683622920402129 AYVWDNNKDLAEWLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 AYVWDNNKDLAEWLEK 16 1 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 155.1 2.6624000000000003e-07 348940000.0 314210.0 290270.0 264960.0 250220.0 302300.0 430270.0 386320.0 352180.0 523660.0 436890.0 False True 312518.328272013 299931.4614780798 302264.06492639426 281897.8263443655 340796.113127521 400526.44764663425 367632.2257142853 378461.45993380394 394611.0096844996 409007.30615965236 0.7640898428108378 0.7333156571071232 0.7390187421454232 0.6892244272876856 0.8332274460507908 0.9792647750167385 0.8988402411833282 0.9253171134944833 0.9648018598730524 1.0 18.641767088914726 2.984815159220528 3.8465961212648625 0.9415736896744968 0.7329244961279135 0.9098307030704333 0.032869043882322584 0.061946040514304294 2.031091413665307 0.009976579439389925 0.011324677415639995 965.6398039922836 -2.984815159220528 -0.2086491935465833 AYWQVHLDQVEVASGLTLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 AYWQVHLDQVEVASGLTLCK 20 0 A0A1B0GW44;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;C9JH19;H7C469 A0A1B0GW44 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 ; 228.68 2.8841e-25 678970000.0 896700.0 827110.0 767770.0 718280.0 695260.0 780440.0 844000.0 773400.0 842160.0 768910.0 False True 891872.2668327347 854639.8563514475 875865.3424235276 809214.1743530926 783797.2398711218 726490.0197581494 803172.495606898 831115.0352456243 634620.952365844 719837.5055030287 1.2389911056516658 1.1872677511492231 1.2167542476290747 1.1241622840804977 1.088853017353406 1.0092416888593096 1.1157691693844627 1.1545870128909632 0.8816169587084315 1.0 19.457311747015634 7.517781354091224 0.17913408589517435 0.9729229465968852 2.003524318091024 0.5763336540555988 0.06839083751993866 38.43039884644583 0.5007952336483621 0.16439728191819916 10.410833908052844 32944381.166569274 -7.517781354091224 1.0306013714941387 AYYEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 AYYEFR 6 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;;; 118.06 0.05163 4415150000.0 4699720.0 6505870.0 6082990.0 5501410.0 4348540.0 4929450.0 5199560.0 4303660.0 7197920.0 5213590.0 False True 4674417.229707983 6722413.950068538 6939422.117703078 6197887.941927728 4902300.793184089 4588688.724177143 4948037.418551902 4624820.9627426695 5424089.063186514 4880854.222621037 0.9577047411175915 1.3773027514143983 1.4217638555032655 1.2698367251377238 1.004394019895873 0.9401404989540949 1.0137646389067503 0.9475433503644212 1.1112991324444348 1.0 22.218702232458682 3.2372382968590365 6.586625028896823 0.9938731178267044 1.2781112262793175 0.5000476101639719 0.12345112795510824 0.10689658021411087 21.101580686064377 0.0347896473770948 0.04431661982308621 1726.785117009313 -3.2372382968590365 0.2842381084526131 CAAPRPPSS(ph)SPEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 CAAPRPPSSSPEQR 14 1 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;E9PQP7;H0YEN2 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 CAAPRPPS(0.07)S(0.465)S(0.465)PEQR;CAAPRPPS(0.089)S(0.562)S(0.349)PEQR 122.31 6.6313e-05 675800000.0 646320.0 926590.0 915530.0 940270.0 880400.0 800100.0 839640.0 682440.0 660210.0 871660.0 True False 642840.2849329018 957430.988014516 1044428.6660705836 1059308.0855919449 992513.7214603679 744790.9702328122 799023.4054637153 733367.1381601042 497510.09186075605 816029.912534329 0.7877655892986136 1.173279279727676 1.279890173176276 1.2981240875130071 1.2162712496383086 0.912700574810706 0.9791594562780218 0.898701293782846 0.6096713909857154 1.0 19.638262511283074 2.6783794814967754 5.249316467184238 0.8811668325958528 1.1675515757742265 0.399299101742978 0.16574314186299952 0.2227837955768937 12.849729575865 0.05555275418477697 0.05271775548219924 476.8474686249734 -2.6783794814967754 0.2863847431783737 CAAPRPPSSS(ph)PEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 CAAPRPPSSSPEQR 14 1 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;E9PQP7;H0YEN2 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 CAAPRPPS(0.008)S(0.236)S(0.755)PEQR 135.69 1.9048e-05 327510000.0 168170.0 201480.0 214730.0 175060.0 218950.0 219270.0 205880.0 183830.0 188970.0 209920.0 True False 167264.59140544338 208186.14000276788 244962.11753338116 197222.57805069385 246831.98468167623 204112.38100606017 195920.79786202387 197548.32806982577 142400.87556826908 196522.72587844625 0.8511208597264233 1.0593489331688577 1.2464823924989508 1.0035611768008983 1.2559971554350788 1.0386197326222124 0.9969371073308098 1.00521874600912 0.724602586961608 1.0 17.58433662975197 1.6018723638612113 2.1539601272054725 0.8678895602769734 1.0804955930734934 0.26020164240622423 0.12931843809234167 0.34847570453988325 3.491408002490161 0.0949680598788495 0.03497755141822945 39.98272260411084 -1.6018723638612113 0.21260603279652002 CAAPRPPSSSPEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 CAAPRPPSSSPEQR 14 1 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;E9PQP7;H0YEN2 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 0 ; 118.24 0.0002343 65078000.0 84658.0 71399.0 78786.0 77243.0 74643.0 89381.0 89972.0 80940.0 92298.0 84144.0 False True 84202.21073438805 73775.47255339297 89878.38397981187 87021.95588009672 84148.34360627705 83202.30185024232 85619.7106335828 86980.15380499205 69552.39462983605 78773.85788069728 1.0689105878489789 0.9365476636313237 1.1409671482121944 1.104706030925782 1.0682267679935062 1.056217177737466 1.0869051349910213 1.1041753716914966 0.8829375188806025 1.0 16.265429311727218 1.2455989611129474 24.999976824272103 0.9414687467276922 1.0716641686002342 0.45128102101702494 0.05705282418937225 126.43182163560378 449093.4593379976 0.03947102170386137 0.013731273845682863 17.603497426330197 -1.2455989611129474 0.13019542187254196 CACASHVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 CACASHVAK 9 0 Q16643;Q16643-3;Q16643-2;D6R9W4;D6RFI1;D6RCR4 Q16643 DBN1 Drebrin 0 ;; 99.442 0.0053345 437935000.0 612840.0 586020.0 584200.0 517640.0 478340.0 565650.0 687540.0 583230.0 862880.0 633600.0 False True 609540.5375329244 605525.3214434296 666450.2820425711 583173.1709251744 539253.7636566936 526547.9468968747 654281.0635421419 626753.5841819317 650234.7859996192 593163.1055477494 1.0276103348842835 1.020841174678699 1.1235531606894962 0.9831581996096167 0.9091154837736007 0.8876950403222402 1.1030373558685074 1.056629413259214 1.0962158298756082 1.0 19.17806934010086 -0.47538074811951114 7.956720798840707 0.9999999995635248 1.0234461279225577 0.008494983807339151 0.07476619494689893 0.0 0.0 0.07727175874879344 0.0182131282018276 0.3346719019927346 0.47538074811951114 0.023446128359032925 CAGGHDDATLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 CAGGHDDATLAR 12 0 P49916-3;P49916;P49916-4;P49916-2 P49916-3 LIG3 DNA ligase 3 0 ; 208.74 5.4083e-05 448960000.0 521430.0 531490.0 509970.0 498630.0 570540.0 522700.0 542990.0 487240.0 612230.0 571320.0 False True 518622.6788163186 549180.3233575105 581769.3432612981 561756.506874314 643194.8871444786 486566.97930345015 516723.4992767654 523600.3229545875 461354.1199616948 534857.8684683392 0.9696457870227974 1.0267780577486616 1.087708300762777 1.0502911894761946 1.2025529118350298 0.9097126694551982 0.9660949753931735 0.9789522671770919 0.8625733062184624 1.0 19.02879603941138 2.6955903533217893 24.999998895007355 0.9471401394189272 1.065317181560278 0.471619852855667 0.06551101158623106 442.98581535578256 257727.78872932718 0.021109951367175455 0.01990274223643207 496.12413340635743 -2.6955903533217893 0.11817704214135083 CAGNEDIITLR ddPTM_BT-474_Trastuzumab_2h_R1 1 CAGNEDIITLR 11 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 101.5 0.0075271 149780000.0 449430.0 257160.0 237190.0 243970.0 231890.0 351140.0 282710.0 300330.0 629580.0 328650.0 False True 447010.3188163674 265719.41514349723 270584.2903075616 274856.5769851926 261419.81698028717 326866.5182946501 269034.2372429223 322742.14964483905 474428.44493978366 307675.2756285794 1.452863958285654 0.8636359050971305 0.8794476246255373 0.8933333249597704 0.8496614375211252 1.0623749913829217 0.8744096732936582 1.0489700512512035 1.541977801012864 1.0 18.231048989732628 1.4317919003506996 9.551027103587533 1.280316782214778 0.9696409801973747 0.2267286839564573 0.20924598669402736 0.3645658105591515 68.91983606642181 0.119944804737887 0.04837650031074565 27.026630264512967 -1.4317919003506996 -0.3106758020174034 CALGWDHQEK ddPTM_BT-474_Trastuzumab_2h_R1 6 CALGWDHQEK 10 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;;;; 181.53 1.8774e-06 6702610000.0 10322450.0 8460080.0 8499480.0 8557000.0 8283060.0 10950130.0 11102960.0 9382780.0 12685610.0 10218500.0 False True 10266875.076132005 8741668.648573637 9696132.905195478 9640315.32263103 9337858.59345698 10193173.28693341 10565867.40737389 10082970.688391434 9559411.393965125 9566346.581501998 1.0732284251528779 0.9137938474314737 1.0135669686005775 1.0077321828661383 0.976115439044741 1.0655241476033785 1.1044830246694823 1.0540043267811776 0.9992750432489783 1.0 23.189536629345504 2.7352851893428287 24.902341245241377 1.0534219447760007 0.9938001987395472 0.19230799429785173 0.047060879790295836 358.36966927557705 2724588.861889392 0.014426529307874787 0.014125316129763721 543.6071863259995 -2.7352851893428287 -0.05962174603645354 CALSS(ph)PSLAFTPPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 CALSSPSLAFTPPIK 15 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 CALS(0.121)S(0.86)PS(0.019)LAFTPPIK 98.942 0.0028675000000000003 29125000.0 143890.0 117750.0 105520.0 98254.0 97928.0 173440.0 131520.0 124780.0 191600.0 134580.0 True False 143115.31222768206 121669.23756862195 120376.29880371802 110692.94632579053 110398.5503352691 161450.50103384434 125157.8751448096 134091.7172200013 144382.74730846344 125990.98918026508 1.135917045804886 0.9656979309412385 0.9554357782800349 0.878578278065692 0.8762416348467058 1.2814448246203114 0.9933875109571251 1.0642960904779142 1.1459767737983535 1.0 16.942961030941312 2.781253176544134 24.99945457174226 1.0892301938272861 0.9575180145217822 0.30427435336169006 0.10132673019967206 619.3037596755063 362644.1388892191 0.030729924313596755 0.03259377899894519 604.3008102371283 -2.781253176544134 -0.13171217930550394 CALSSPSLAFT(ph)PPIK ddPTM_BT-474_Trastuzumab_2h_R1 2 CALSSPSLAFTPPIK 15 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 CALSSPS(0.004)LAFT(0.996)PPIK;CALSSPS(0.015)LAFT(0.985)PPIK 105.0 0.015084 175742000.0 471210.0 393190.0 394200.0 392970.0 372050.0 578170.0 519520.0 505880.0 662390.0 494220.0 True False 468673.0577163522 406277.0914616262 449699.93355217634 442719.96170787816 419428.3621868807 538202.4687657852 494388.83284087206 543631.3344065895 499152.8600712594 462678.4564769703 1.0129563007645253 0.8780981387272535 0.9719491522825205 0.9568631422325894 0.9065223511390306 1.163232178268871 1.068536530975222 1.1749657387249641 1.0788331574199945 1.0 18.819650399237087 2.741714716682465 24.999985506230047 1.110940110517165 0.9436709791045849 0.62899254811637 0.05781378738408614 152.40967896785617 1208031.2372039724 0.016696346815671052 0.017034745416817806 551.7149047062225 -2.741714716682465 -0.16726913141258015 CAPSAGS(ph)PAAAVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 CAPSAGSPAAAVGR 14 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 CAPSAGS(1)PAAAVGR;CAPSAGS(1)PAAAVGR;CAPS(0.001)AGS(0.999)PAAAVGR;CAPS(0.001)AGS(0.999)PAAAVGR 271.0 6.3258e-33 4350740000.0 848650.0 834720.0 773290.0 862580.0 868900.0 908230.0 891380.0 839380.0 984620.0 816440.0 True False 844080.9626938794 862503.1506011039 882162.5104428285 971782.5395576791 979549.2646262088 845446.1978434522 848260.5439977228 902018.7978852747 741973.5942320421 764334.1002105497 1.1043350839133854 1.128437355292027 1.1541582538314343 1.2714106819125093 1.2815721087890417 1.1061212598136845 1.1098033487764762 1.1801367983409314 0.9707451152940213 1.0 19.54384387101767 1.2390844680238666 24.999530225756107 0.9853724777571768 1.168266716030137 0.5865255490987659 0.06099043083193157 9.965302153716923 475782.91410332825 0.05105751142000543 0.016053902811145906 17.34141246433245 -1.2390844680238666 0.18289423827296014 CAPSAGS(ph)PAAAVGRES(ph)PGAAATSSSGPQAQQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 CAPSAGSPAAAVGRESPGAAATSSSGPQAQQHR 33 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 CAPS(0.17)AGS(0.83)PAAAVGRES(0.992)PGAAAT(0.002)S(0.003)S(0.002)S(0.001)GPQAQQHR;CAPS(0.005)AGS(0.995)PAAAVGRES(1)PGAAATSSSGPQAQQHR 197.03 9.549e-27 1024090000.0 292000.0 265410.0 292790.0 301150.0 330960.0 402830.0 361580.0 335030.0 431910.0 354160.0 True False 290427.9044442499 274244.01140626677 334012.28702369815 339275.5591223946 373105.794246392 374983.31025982206 344088.99403026316 360031.63984786835 325471.5677974868 331557.20558836893 0.8759511165769042 0.8271393496624623 1.0074046993820343 1.0232791005712845 1.1253134842426136 1.1309762054315509 1.0377967609530783 1.0858809091751445 0.9816452856752644 1.0 18.33889828323175 4.098708853097674 2.8629242927314604 1.063795351697363 0.848531143927271 0.7225941102267082 0.04911399756664107 0.12268946231197567 2.0025075238559324 0.01272506899877572 0.03341055578456927 12551.88215299531 -4.098708853097674 -0.21526420777009203 CAPSAGSPAAAVGRES(ph)PGAAATSSSGPQAQQHR ddPTM_BT-474_Trastuzumab_2h_R1 3 CAPSAGSPAAAVGRESPGAAATSSSGPQAQQHR 33 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR;CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR;CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR 329.75 2.6745999999999985e-117 4502710000.0 467460.0 499630.0 484590.0 574910.0 566140.0 590550.0 587600.0 548380.0 743120.0 590200.0 True False 464943.2472996884 516259.88251728663 552816.0598682123 647693.5470531497 638234.5732253212 549726.6685051703 559175.5431500167 589302.9002172175 559988.0332978365 552532.9307043583 0.8414760848859955 0.9343513369586289 1.000512420433463 1.1722261444715747 1.1551068502138184 0.9949210951180582 1.0120221114010175 1.0665480145517945 1.0134925941590027 1.0 19.075700925453255 4.332769437621524 2.2956604546393127 1.0610841244082514 0.8521861936061845 0.5734744146298086 0.05996548811848483 0.2388264714589594 2.339713045889754 0.016505089233759127 0.07130631808782767 21516.39148835165 -4.332769437621524 -0.20889793080206687 CAS(ph)CLKEFRSK ddPTM_BT-474_Trastuzumab_2h_R1 1 CASCLKEFRSK 11 2 J3QQI2;J3KTI4;H7BYU6;Q96K83 J3QQI2 ZNF521 Zinc finger protein 521 1 CAS(1)CLKEFRSK 65.5 0.051405999999999986 2413300000.0 1880600.0 3519900.0 2994400.0 3198600.0 2987200.0 3447500.0 3321800.0 2853600.0 2346200.0 3596000.0 True False 1870475.0585543045 3637057.743675515 3415985.492208619 3603542.432040154 3367602.21347843 3209182.4395420793 3161111.8434917047 3066550.1222871905 1768010.4474692987 3366500.2013095096 0.5556141234825183 1.0803676002338463 1.0146993280677246 1.0704120649208455 1.0003273465329043 0.9532696413604145 0.9389905404616009 0.9109015116334632 0.5251775855476182 1.0 21.682818120423057 1.4313582326566086 11.658492841518694 0.7475121053359599 0.9551384624339291 0.14096433278556753 0.17539531876763303 0.8401723223279016 208.36530872600542 0.0993484178671783 0.04046486722668462 26.99965610980721 -1.4313582326566086 0.20762635709796917 CATITPDEKR ddPTM_BT-474_Trastuzumab_2h_R1 6 CATITPDEKR 10 1 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;;;; 166.97 8.6339e-06 5681580000.0 1998260.0 1848310.0 1718130.0 1893970.0 2041760.0 2408580.0 2552840.0 2488400.0 3325370.0 2540230.0 False True 1987501.590187558 1909829.8810230126 1960027.7697463254 2133746.407806881 2301766.033540348 2242080.5337874563 2429349.376404162 2674097.043839169 2505877.12117508 2378110.3465996822 0.8357482624931041 0.8030871585726727 0.8241954678633193 0.8972444911388562 0.9678970687089881 0.942799200631406 1.0215461111288395 1.1244629786261604 1.0537261758093286 1.0 21.181384228393718 2.9760081239575675 0.8279040546893984 1.0721895079353774 0.8080534385997655 0.8487177219086266 0.03934907966465296 0.21692196176913428 0.329987570256685 0.023862643778456028 0.02972928213784422 946.2548619417091 -2.9760081239575675 -0.26413606933561184 CAVSDVEMQEHYDEFFEEVFTEMEEK ddPTM_BT-474_Trastuzumab_2h_R1 8 CAVSDVEMQEHYDEFFEEVFTEMEEK 26 0 P0DN76;Q01081 P0DN76 U2AF1 Splicing factor U2AF 35 kDa subunit 0 ;;;;;;; 249.12 9.9307e-46 395929000.0 358095.7 286075.9 286822.2 286481.3 285256.9 361552.7 366320.7 336847.1 489031.5 358117.5 False True 356167.7525393722 295597.7633949664 327204.2726567454 322749.80320641014 321582.6753648888 336559.41285250883 348600.3682600311 361984.34107691585 368516.2395113723 335262.1345501834 1.0623560367687739 0.8816914674589359 0.9759654877093439 0.9626789605674949 0.9591977209008464 1.0038694447378198 1.0397844919998003 1.0797054118938463 1.0991883709319141 1.0 18.354930024727793 2.322642338237153 2.0077271337588964 1.067246844234299 0.963644975002135 0.4197797421398628 0.04750505634545118 0.26470173275794 2.1807127215363535 0.02018223342075134 0.014350229491890857 210.20465933198574 -2.322642338237153 -0.10360186923216408 CCHLFSTYVASHK ddPTM_BT-474_Trastuzumab_2h_R1 1 CCHLFSTYVASHK 13 0 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 0 84.169 0.0057063 432020000.0 668010.0 792440.0 791950.0 768310.0 716350.0 878810.0 918740.0 491160.0 960960.0 803410.0 False True 664413.5083828886 818815.8863599038 903449.6762471999 865577.9672234019 807572.9263608983 818059.9331962214 874297.0362723726 527812.8532599444 724144.284204286 752135.6859660939 0.8833692122046716 1.0886544830114813 1.2011791131632692 1.150826883199399 1.0737064354599757 1.087649407494141 1.1624192982538335 0.7017521746518195 0.9627841062668715 1.0 19.52063342332415 1.7537232895181551 24.999999999999655 0.8627431499639527 1.0979015222009887 0.4178765355240196 0.10917682272563525 4.1656184739550435 6876.954283852756 0.04905345278385302 0.027202808009721375 56.71831098619575 -1.7537232895181551 0.23515837223703595 CCLTYCFNKPEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 CCLTYCFNKPEDK 13 1 P62979;A0A2R8Y422 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ; 218.31 2.2212e-11 4881700000.0 6438000.0 4381900.0 4021500.0 3938100.0 3970800.0 5897700.0 5896100.0 5387800.0 8643600.0 5816600.0 False True 6403338.523329043 4527748.892585509 4587692.244495383 4436663.056217509 4476457.843224472 5490005.880692483 5610883.117710706 5789864.9946940495 6513500.598306037 5445379.608158207 1.1759214203791473 0.8314845278742526 0.8424926404804092 0.8147573494363094 0.8220653407740194 1.0081952546462358 1.0303933832830579 1.0632619599228195 1.1961517960194332 1.0 22.37660119489036 2.442081358999708 2.5350294132104088 1.0778515000936768 0.8868325900657211 0.3559138232806536 0.11032187496478188 0.3003533371777162 3.9361596221822444 0.04254307152364451 0.03506927283373842 276.74600418023255 -2.442081358999708 -0.19101891002795568 CCSFDGDADR ddPTM_BT-474_Trastuzumab_2h_R1 2 CCSFDGDADR 10 0 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A087WT27;A0A494C1E2;A0A494C1Q4;J3KN95 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ; 253.05 1.0481e-16 1154850000.0 943300.0 1012540.0 899720.0 989700.0 989190.0 1148960.0 1056760.0 1003120.0 1191520.0 1074020.0 False True 938221.3776104823 1046241.7818066435 1026392.7554935673 1114995.9185237736 1115157.4831115198 1069535.099560918 1005640.4815847708 1077977.9081401478 897885.8615500029 1005475.1240852168 0.9331124710460419 1.0405446706187946 1.0208037284138496 1.108924419724654 1.1090851045430807 1.0637111490291549 1.0001644570766526 1.072107983895568 0.8929965943880523 1.0 19.939445958473318 1.2485903549857258 24.999884501023804 0.9464982848051132 1.0467762455484813 0.3316778288590094 0.054957870046379455 196.48451500701916 489760.73277626326 0.03753368086659471 0.01335230245058132 17.725167789686967 -1.2485903549857258 0.10027796074336803 CCWDEPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 CCWDEPVR 8 0 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753 Q86TX2 ACOT1;ACOT2 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial 0 75.109 0.068057 0.0 194340.0 239190.0 224100.0 222200.0 209110.0 267260.0 251270.0 213980.0 264740.0 254030.0 False True 193293.6950332039 247151.29455659166 255651.33208788114 250330.49721732052 235738.91900792555 248784.9452623685 239115.11015538572 229948.27416842326 199498.37433425197 237817.58791397535 0.8127813284487736 1.0392473354241258 1.0749891727114678 1.0526155757154152 0.9912593979096209 1.0461166789411738 1.0054559557717813 0.966910295346202 0.8388714059551204 1.0 17.859495888670825 1.5228534282458361 4.222151664529906 0.9145164735325743 1.0097422290077358 0.14774320593434265 0.0779652389176893 0.27613543471446284 10.767648206337432 0.04737046714985545 0.019594349197015914 33.331390235761894 -1.5228534282458361 0.09522575547516154 CDENILWLDYK ddPTM_BT-474_Trastuzumab_2h_R1 8 CDENILWLDYK 11 0 P14618;P14618-3;B4DNK4;H3BUW1;H3BTJ2;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;; 192.44 3.2337e-06 5982769000.0 5628996.0 4956172.0 4820032.0 4429927.0 4392901.0 6294644.0 6620896.0 5623080.0 7848752.0 5872193.0 False True 5598690.110976249 5121135.188950762 5498650.609130816 4990755.303989348 4952310.903585834 5859510.076278141 6300617.966201105 6042702.783021684 5914532.237488517 5497424.615302635 1.018420533751701 0.9315516896212758 1.0002230123947071 0.9078351506807529 0.9008419851361996 1.0658645613743578 1.1461035679621145 1.0991879299629161 1.0758732772842068 1.0 22.390324485253036 2.6148557308984675 5.441357635369172 1.0931572687575837 0.9513899096281438 0.6208608659830326 0.048679466793484075 0.1346032153406333 5.439271716450433 0.01555526825742186 0.014602487370412124 411.96064638192064 -2.6148557308984675 -0.14176735912943983 CDFTEDQTAGDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 CDFTEDQTAGDGK 13 0 F8VPF3 F8VPF3 MYL6 0 72.922 0.08894400000000001 1140300000.0 1426700.0 1879400.0 1667500.0 1452500.0 1603900.0 1719800.0 1661100.0 1524100.0 1113200.0 1707200.0 False True 1419018.805721273 1941954.6928787068 1902269.5058301757 1636386.3510718213 1808147.157939896 1600914.2739737409 1580746.2469817763 1637836.081222985 838866.7761157708 1598245.0343925464 0.8878606065937862 1.215054419747843 1.1902239424464607 1.0238644987836747 1.1313328801469595 1.0016701066005245 0.9890512486920249 1.0247715750579423 0.524867437760946 1.0 20.608057180845673 1.3890057323911311 8.214657345340786 0.7612124289814222 1.0649872195189365 0.4150310305489906 0.14088314946923317 0.2182787038430619 17.548627264791122 0.08809490623214383 0.032373188157286126 24.490955680235135 -1.3890057323911311 0.3037747905375143 CDGETDKHWR ddPTM_BT-474_Trastuzumab_2h_R1 4 CDGETDKHWR 10 1 Q9NXV6;J3KNE1;D6RGD2 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 0 ;;; 188.28 6.840100000000001e-07 1052260000.0 948320.0 873940.0 808000.0 926150.0 958410.0 1096110.0 1138860.0 960260.0 1330920.0 994640.0 False True 943214.3504882581 903028.564592113 921759.3767380988 1043400.4950397012 1080457.8325588738 1020338.4956654 1083768.990932315 1031919.4773014784 1002932.5994143038 931161.2236458529 1.0129441889721444 0.9697875530688556 0.9899030944706415 1.120536882919575 1.1603337908858227 1.0957699587944438 1.1638897361822522 1.1082070978655214 1.0770772815124736 1.0 19.828671455772977 3.7409319142066866 24.159056595918354 1.1134577085705564 0.9887691917102996 0.5622841808077719 0.04502610703648988 79.36534136092742 808572.7571300077 0.010942663590918037 0.018600328185232367 5507.213512156341 -3.7409319142066866 -0.12468851686025673 CDILVQEELLAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 8 CDILVQEELLASPK 14 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK 244.64 1.3930000000000002e-17 1779283000.0 2868988.0 1835545.0 1646176.0 1367897.0 1547174.0 2528528.0 2435095.0 2183239.0 3706869.0 2368914.0 True False 2853541.6873825337 1896640.0057146172 1877943.2719817066 1541072.6199463615 1744197.4380812417 2353736.810874679 2317300.1518837437 2346163.3804430077 2793360.804449774 2217727.8803906897 1.2866960426541758 0.8552176407596466 0.8467870601197816 0.6948880579861204 0.7864794655392853 1.0613280518708315 1.0448983269649443 1.0579131015973393 1.259559763462809 1.0 21.080650924140564 2.63600120055583 6.199926987473818 1.0847624814907166 0.8786375461308021 0.2644125413918963 0.1583055130849909 0.3254312796156969 16.669742733503245 0.052718030250332594 0.04960622792520798 432.51502667009214 -2.63600120055583 -0.2061249353599145 CDLEDER ddPTM_BT-474_Trastuzumab_2h_R1 2 CDLEDER 7 0 F5H823;B7ZB78;F5GZG1;P61224-2;P61224-4;P61224-3;P62834;P61224;A6NIZ1;F5H004;A0A075B6Q0;F5GX62;E7ESV4;F5H7Y6;O95716 F5H823;O95716 RAP1B;RAP1A;RAB3D Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein;Ras-related protein Rab-3D 0 ; 114.78 0.013557 1113620000.0 2328900.0 2770700.0 2849000.0 2545800.0 2936500.0 3249200.0 2875300.0 2353300.0 3529900.0 2693000.0 False True 2316361.4611651166 2862921.074576481 3250114.4360480797 2868098.018973245 3310445.869000877 3024590.4517940874 2736210.7542873383 2528915.1958152666 2660003.4432366663 2521130.434406702 0.918778905507214 1.1355703915613602 1.289149657507875 1.1376238134415266 1.3130799675503202 1.199696140475915 1.0853110640153179 1.0030878058914856 1.0550836271438868 1.0 21.26563932941028 2.0420929788874345 3.9108942842002876 1.0234582781432005 1.1748177428203024 0.29325404051216686 0.10171198675236716 0.27674659084805664 8.9809976467878 0.04430051572005136 0.02951657362758766 110.17751653216459 -2.0420929788874345 0.15135946467710193 CDLVNYSYGEATHWPNSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 CDLVNYSYGEATHWPNSGR 19 0 A0A494C0U1;Q5VZU9;P29144;A0A494C0X4 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 203.77 4.900800000000001e-16 171250000.0 95356.0 85436.0 97023.0 106510.0 107460.0 120710.0 114760.0 95290.0 124900.0 107500.0 False True 94842.61389104757 88279.68561284748 110682.99506096615 119994.15507928355 121144.39403467889 112365.60182077576 109208.62037422716 102401.02367281563 94120.06857425423 100639.2579646196 0.9424017605971432 0.8771893533225651 1.0997993953798575 1.1923195530860164 1.2037488797589109 1.1165185842315992 1.0851493004113781 1.0175057501796705 0.9352222033209224 1.0 16.61883366449807 4.23451505973225 24.998250424698895 1.0878288927473707 0.9097955299540528 0.4241971787516705 0.07962645185870462 90.58553364525726 559759.236738872 0.021763747577789802 0.04989543241286107 17159.912133411362 -4.23451505973225 -0.17803336279331794 CDNFTSSWR ddPTM_BT-474_Trastuzumab_2h_R1 4 CDNFTSSWR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8;E9PKG0 Q15149-3;Q15149-4;Q15149-5;Q15149-8;E9PKG0 PLEC Plectin 0 ;;; 156.83 0.00016285 1416860000.0 517592.0 570987.0 550229.0 552910.0 506418.0 577806.0 629658.0 536082.0 678766.0 575064.0 False True 514805.342181877 589991.9571260693 627696.4605237973 622908.3493088607 570907.3305253484 537863.6312290211 599199.0370128534 576087.1610092376 511493.21429841634 538362.92318294 0.9562421927910925 1.09590005499986 1.1659355306503918 1.157041695267695 1.060450684735118 0.9990725736628241 1.1130020497515591 1.0700721320169344 0.9500899714161907 1.0 19.03821953003512 3.011699588955251 24.838228496251656 1.0400458377501953 1.100292910010817 0.16387200440504135 0.06774806799856657 421.859915146089 895601.7566524158 0.02029330116899041 0.02423862518842937 1027.305442529045 -3.011699588955251 0.06024707226062165 CDPAPFYLFDEIDQALDAQHR ddPTM_BT-474_Trastuzumab_2h_R1 6 CDPAPFYLFDEIDQALDAQHR 21 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ;;;;; 258.9 1.5625999999999998e-36 633517000.0 271666.0 284234.0 274452.0 276659.0 293162.0 300651.0 301997.0 285834.0 345540.0 306113.0 False True 270203.38044092973 293694.5568669187 313092.45602045156 311684.0010335135 330494.44299269054 279867.70402632776 287388.25136942737 307164.3845156421 260386.29699878127 286576.60626347543 0.9428661465566651 1.024837863411988 1.0925262187402616 1.0876114596281967 1.15324990166447 0.9765894979195211 1.002832209915996 1.0718404007940496 0.9086097445071456 1.0 18.1285613191898 CDPDAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 CDPDAAR 7 0 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 100.74 0.046513 0.0 220740.0 241350.0 204470.0 225070.0 232060.0 172770.0 225110.0 207220.0 228590.0 209700.0 False True 219551.5603665198 249383.1888508438 233257.59871490023 253563.83892305283 261611.46547261812 160826.81655683386 214220.56929629043 222683.80864183907 172257.05744906928 196316.7664667978 1.118353589038212 1.2703101896954936 1.1881695227205675 1.2916056202766408 1.3325986882371728 0.8192209939645364 1.0911985417838503 1.1343086617082225 0.8774444513795635 1.0 17.58282386611784 2.755487611991523 24.99979843966115 1.0132826217198931 1.2418443442814244 0.5990745437069496 0.10327651215061492 647.9032721178609 956899.573227617 0.03218485240403991 0.03405674118445031 569.4919794543687 -2.755487611991523 0.2285617225615313 CDSADLR ddPTM_BT-474_Trastuzumab_2h_R1 1 CDSADLR 7 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 93.262 0.035045 208550000.0 611970.0 684640.0 624680.0 662550.0 676210.0 619740.0 686950.0 620170.0 840130.0 720300.0 False True 608675.2215162594 707427.82852638 712629.5141841036 746428.7620672183 762321.3352893185 576898.83251104 653719.6040961599 666450.2345594508 633091.2186652377 674329.8373201439 0.9026372374907764 1.0490827920914354 1.0567966516447893 1.1069193749954813 1.1304873269717113 0.8555143204158002 0.9694359761598401 0.9883149130816938 0.9388450334352803 1.0 19.36309490897282 2.746221852236088 24.990840281236977 0.9545151090761801 1.0528093825470688 0.3499254167819247 0.0670998253649293 701.3889326304039 2287920.6700045234 0.02116524062093172 0.022075781818283704 557.4704508741872 -2.746221852236088 0.0982942734708887 CDSVCVNPYHYER ddPTM_BT-474_Trastuzumab_2h_R1 3 CDSVCVNPYHYER 13 0 K7EIU8;Q13485;K7EIJ2;K7ES96 K7EIU8 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 0 ;; 157.38 1.9561e-06 438580000.0 498830.0 486760.0 452200.0 479710.0 431650.0 563270.0 514760.0 459600.0 725760.0 533500.0 False True 496144.3547052234 502961.51234736614 515865.82940713916 540441.2368142257 486618.0689100047 524332.4706949582 489859.09222583845 493897.68580151175 546906.1726857546 499451.57324767055 0.9933782998801224 1.0070275864321987 1.032864559926672 1.0820693451819983 0.9743048074626809 1.0498164362272409 0.9807939717569468 0.9888800281275624 1.095013414673042 1.0 18.929985275733035 CDSWWAK ddPTM_BT-474_Trastuzumab_2h_R1 2 CDSWWAK 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 102.72 0.019862 717560000.0 1369520.0 1330270.0 1429890.0 1294380.0 1302000.0 1650420.0 1641100.0 1601750.0 1899950.0 1744370.0 False True 1362146.6564879764 1374547.2327848028 1631206.083173319 1458248.3752842294 1467801.9824413888 1536330.3500707885 1561713.7233891955 1721280.7185216958 1431732.7805256562 1633042.8131697078 0.8341157044401508 0.8417092446687484 0.998875271375878 0.8929639587671279 0.8988141465761149 0.9407777540680626 0.9563213596084087 1.0540328181480556 0.8767270331061852 1.0 20.639131183578318 7.69953680034706 0.27318176964561003 0.9911682998494585 1.6900248326661484e-15 0.364545714716872 0.055231316652759696 43.94810088275247 0.7167895068592983 0.06395570999907924 19.986725711094444 50065297.40271234 -7.69953680034706 -0.9911682998494569 CDVDIRK ddPTM_BT-474_Trastuzumab_2h_R1 3 CDVDIRK 7 1 P60709;A0A2R8Y793;Q562R1;P63261 P60709;P63261 ACTB;ACTBL2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;; 69.344 0.096195 47854400000.0 46730100.0 54681600.0 48754700.0 52099700.0 52123400.0 56544600.0 65374200.0 50548800.0 88578600.0 62376500.0 False True 46478510.333802246 56501644.00027475 55618937.976550736 58695516.67809736 58761006.03040366 52635804.893671095 62211800.19230394 54321008.13760548 66749590.92242946 58395578.36679153 0.7959251647764088 0.9675671614275195 0.9524511877800012 1.0051363188736975 1.0062577968029842 0.9013662740534494 1.0653512120651007 0.9302246789372809 1.1430589916100342 1.0 25.79935579855992 5.532847070267827 1.1298655835502855 0.9985416018845908 5.453528655769492e-12 0.4773971716758707 0.06423176220339848 7.0721702202160275 2.0004906147486983 0.016934082408372998 12.922411020881892 341072.7872433472 -5.532847070267827 -0.9985416018791373 CDYMDEVTYGELEKEEAQPIVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 CDYMDEVTYGELEKEEAQPIVTK 23 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 203.64 1.7024999999999997e-24 233890000.0 220107.0 179347.0 176222.0 172723.0 155187.0 239043.0 229159.0 220664.0 325264.0 216287.0 False True 218921.96836818656 185316.45647744928 201032.52585091768 194589.7140903117 174949.14458458664 222518.5200566956 218073.70369760832 237131.06818908805 245107.04551430102 202483.37848738328 1.0811848854143233 0.9152181174663496 0.9928347074841207 0.9610157413608967 0.8640173128852041 1.0989470924427542 1.0769955802134963 1.1711137475111997 1.2105045231136027 1.0 17.627443958937647 2.5840686480982225 6.181856328606928 1.126516778943929 0.9620571444604631 0.5011887801236149 0.07384661857207377 0.18045630255576836 8.941285399355056 0.023445527091704197 0.02200326241493217 383.76790215659844 -2.5840686480982225 -0.1644596344834659 CEAFGWHAIIVDGHSVEELCK ddPTM_BT-474_Trastuzumab_2h_R1 2 CEAFGWHAIIVDGHSVEELCK 21 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 ; 312.47 8.195799999999997e-67 632850000.0 911760.0 850470.0 1037010.0 719540.0 382920.0 733600.0 914950.0 591690.0 1753290.0 799740.0 False True 906851.1854660601 878777.3798300289 1183011.9941474956 810633.6902239016 431682.592255343 682887.9587086495 870690.3730515791 635844.9123409411 1321215.1723823373 748699.9085081388 1.2112345349060532 1.1737377951348795 1.5800883380696118 1.0827217701137057 0.5765762588585255 0.9120983600350288 1.1629363956869165 0.8492653800478314 1.7646792224337167 1.0 19.5140280525862 3.4973045538033034 24.55742863868038 1.0098179895986021 1.3109775458913082 0.13977598839163818 0.3029167904942289 1082.7227352003692 1317367.539935185 0.07981307789958936 0.1218821678491611 3142.7117826724657 -3.4973045538033034 0.3011595562927061 CEDRPVVFTHLLTADHGPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 CEDRPVVFTHLLTADHGPPR 20 1 H0YF29;Q6P1X6-2;Q6P1X6 H0YF29 C8orf82 UPF0598 protein C8orf82 0 205.24 5.6986e-22 127230000.0 23274.0 28642.0 31157.0 25556.0 31387.0 48163.0 25418.0 14971.0 33597.0 26777.0 False True 23148.6953699845 29595.331655545382 35543.634778501175 28791.386979684296 35383.94840467581 44833.60517350694 24188.434233810593 16088.212041197632 25317.469526735145 25068.06893505694 0.9234335293219074 1.1805987821486001 1.417884834710761 1.1485283152153936 1.4115147240237726 1.7884746244178582 0.9649101530905635 0.6417810674957396 1.0099489351303572 1.0 14.613563245082346 2.0170337224996286 24.95164749718547 0.8339172331902259 1.3134674078288664 0.42375980539125235 0.23208198661194465 198.03033584513526 290081.21012549306 0.08875254177844913 0.06553351541687837 104.00009176470682 -2.0170337224996286 0.47955017463864047 CEELSGLHGQLQEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 CEELSGLHGQLQEAR 15 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 160.04 1.7313999999999996e-06 182800000.0 82586.0 81319.0 94965.0 90238.0 82359.0 110900.0 111680.0 92447.0 112340.0 92745.0 False True 82141.36615216713 84025.65375662633 108335.24654942274 101662.12154768947 92846.93046996185 103233.7440305198 106277.61174096973 99345.86457635403 84655.31227887684 86825.93469701071 0.9460464369178295 0.9677483352162428 1.2477291137431608 1.1708727571140047 1.069345591198783 1.1889735986231078 1.2240307243663766 1.1441957397064952 0.9750002988656729 1.0 16.405838416115454 4.329386766117063 8.21527821668859 1.1393774692659142 0.9531215710111091 0.3813771607766262 0.08595128872216407 0.22481724481532425 17.849620113400082 0.02034006577770699 0.056036456854419485 21349.45367778514 -4.329386766117063 -0.18625589825480515 CEELVEPFRCDSQLIQHQENNTEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 CEELVEPFRCDSQLIQHQENNTEEK 25 1 A0A3B3ITE4;P17027-2;P17027 A0A3B3ITE4 ZNF23 Zinc finger protein 23 0 50.539 0.045898 1059100000.0 433930.0 600250.0 497680.0 529590.0 589850.0 565000.0 479370.0 529910.0 327660.0 712060.0 False True 431593.76909415505 620228.9583912127 567749.0180878934 596636.0396999139 664963.9011851406 525942.8798669402 456181.04172876617 569454.575028457 246912.5834190564 666615.7211747636 0.6474401298750739 0.9304145382263046 0.8516886116747451 0.8950224555887673 0.9975220806573357 0.7889746118499599 0.6843238574164549 0.8542471426040156 0.37039718022840395 1.0 19.34649581617753 2.4834540415802833 22.885494430668334 0.7298738661493944 0.8714942952134382 0.12569602014730918 0.17036309379872527 188.99227936723653 682994.5590442483 0.05464757444084839 0.047353208037084114 304.40658402739757 -2.4834540415802833 0.14162042906404382 CEFAVGYQR ddPTM_BT-474_Trastuzumab_2h_R1 1 CEFAVGYQR 9 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;Q9P2J5-2;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8;A0A6I8PRU9 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 82.279 0.041242 0.0 196660.0 143910.0 126300.0 162650.0 138850.0 193570.0 198090.0 158920.0 290180.0 180240.0 False True 195601.20441097984 148699.9573545681 144081.9421807204 183241.4733231196 156531.72447157206 180188.9615147671 188507.62992271394 170779.41737940852 218669.02721278707 168736.92888877264 1.159208038804093 0.8812531929663574 0.8538850572283189 1.0859595141968479 0.9276672599319028 1.0678691540815193 1.1171687855417451 1.0121045731013762 1.2959168372498262 1.0 17.364416223369314 2.5830446078577602 5.074966342746395 1.0970135417120694 0.975141082032318 0.2127784197235365 0.11341049306433254 0.3595404613167204 14.027448311897023 0.03626414787911126 0.03387733846655365 382.8640665628146 -2.5830446078577602 -0.12187245967975147 CEGINISGNFYR ddPTM_BT-474_Trastuzumab_2h_R1 1 CEGINISGNFYR 12 0 P40429;M0QYS1 P40429 RPL13A 60S ribosomal protein L13a 0 180.19 4.5952e-05 288590000.0 154060.0 137470.0 138230.0 162740.0 149960.0 179970.0 159880.0 140440.0 203960.0 163600.0 False True 153230.5580776752 142045.60584763016 157691.58248330146 183342.86731389174 169056.51711744303 167529.09750381098 152145.9935990888 150920.34593987002 153696.79092397817 153158.90793499316 1.0004678157062368 0.9274394010952342 1.02959458649465 1.1970760942726875 1.1037981361763003 1.0938253593118927 0.993386513722504 0.9853840561720819 1.003511927554441 1.0 17.224669752962996 2.2180174967935242 24.00314188652417 0.9933571499326628 1.0597505571447812 0.17782953621302744 0.06640818720779232 299.6888054682716 350160.73152508895 0.028368846083409317 0.020981026222657483 165.2028353568644 -2.2180174967935242 0.0663934072121184 CELVLIHTYPVGEDSLVSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 CELVLIHTYPVGEDSLVSDR 20 0 Q9NVM9-2;Q9NVM9;F8VRX9;F5H457 Q9NVM9-2 ASUN Protein asunder homolog 0 178.88 6.0255e-17 126170000.0 89509.0 107160.0 97191.0 109840.0 101540.0 122720.0 121150.0 89170.0 127960.0 103370.0 False True 89027.09348938473 110726.755820412 110874.64800068401 123745.73273785097 114470.5171252679 114236.65525180675 115289.51166205674 95824.31819608527 96425.97257615355 96772.83810049041 0.9199595179479765 1.1441925027085764 1.1457207433097092 1.2787238151406852 1.1828785780406683 1.1804619715005324 1.1913416401236299 0.9901984903716455 0.9964156727120407 1.0 16.562314552704702 1.6971836635912652 6.27703118251199 0.9949429320119723 1.1560864217532878 0.39814729541886806 0.08596357977470007 0.1356990559041271 12.018395009657361 0.04482933800915067 0.02281050154072775 49.7947623028733 -1.6971836635912652 0.16114348974131554 CENTPLIGRES(ph)PPPSYTSSMR ddPTM_BT-474_Trastuzumab_2h_R1 1 CENTPLIGRESPPPSYTSSMR 21 1 Q9C0H2-3;Q9C0H2-2;Q9C0H2 Q9C0H2-3 TTYH3 Protein tweety homolog 3 1 CENTPLIGRES(0.998)PPPS(0.001)YTSSMR 151.31 3.8243e-08 372530000.0 204650.0 255340.0 244740.0 255090.0 273720.0 255620.0 292600.0 266070.0 265310.0 241880.0 True False 203548.1871387527 263838.83754371037 279197.2646817852 287384.3678450329 308576.6195344525 237949.59106475578 278445.8201594531 285925.4944760837 199927.9054718604 226443.0113161132 0.8988936596263531 1.1651445368538789 1.2329692272641055 1.269124474960483 1.3627120472430092 1.050814461801073 1.2296507564578545 1.2626819119488448 0.8829060535357487 1.0 17.788788488785436 1.2372871410544146 24.99995664751012 0.9414529472340064 1.1948511629994325 0.3724092031204733 0.12531331718352984 33.89027228051461 665178.5682496966 0.09975452305435847 0.030199242236160998 17.269793358545634 -1.2372871410544146 0.2533982157654261 CETS(ph)PPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 CETSPPSSPR 10 0 Q13136-2;A0A2R8Y7R9;Q13136;H0YDW2;O75335;H0YD72;B1APN9;M0QZB5;O75335-1;O75335-2 Q13136-2 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 2 CET(0.122)S(0.878)PPS(0.768)S(0.232)PR 107.85 0.0032597 100400000.0 171780.0 183160.0 172420.0 176540.0 189340.0 205220.0 195940.0 182740.0 193680.0 183960.0 True False 170855.1555665521 189256.36987744193 196695.2372984937 198889.94589894582 213451.3266938963 191033.62443591756 186461.63363651145 196376.9867349179 145950.1591790355 172219.51530392017 0.992077786684277 1.098925226583389 1.1421193292257303 1.1548629988184538 1.2394142807637873 1.10924493138188 1.0826974707683845 1.140271393682455 0.8474658572895964 1.0 17.393889107513818 1.2492560651529292 24.99987872260872 0.9237329253560744 1.123683156251393 0.5697505639454679 0.06814361201130721 125.84475894091281 294157.9330005168 0.046458803595894424 0.016587634903352955 17.752358724026575 -1.2492560651529292 0.1999502308953185 CEYLMELMTPAACPEPPPEAPTEDDHDEL ddPTM_BT-474_Trastuzumab_2h_R1 1 CEYLMELMTPAACPEPPPEAPTEDDHDEL 29 0 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 52.707 0.074991 22175000.0 17495.0 17085.0 13432.0 15789.0 19663.0 19249.0 17628.0 13871.0 19747.0 15772.0 False True 17400.808863877228 17653.66389689941 15323.108846963056 17787.88578111736 22166.96649826809 17918.36193727208 16775.266294500492 14906.124455510815 14880.61644624337 14765.417456911446 1.1784840431810615 1.1956088575495047 1.0377701065126719 1.2046991446754622 1.5012759756340044 1.2135357492980865 1.136118659933199 1.0095294968130757 1.0078019459773555 1.0 13.849934525354339 1.912248304416158 2.604280233706074 1.0043564885140326 1.2232204122078931 0.44779174072021566 0.10730955461486086 0.2887766711570132 3.541104931288788 0.06452218578434216 0.03350630308862931 81.70493793266002 -1.912248304416158 0.21886392369386054 CFLAQPVTLLDIYTHWQQTSELGR ddPTM_BT-474_Trastuzumab_2h_R1 2 CFLAQPVTLLDIYTHWQQTSELGR 24 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 0 ; 261.49 4.5985e-44 287320000.0 220891.0 231812.0 252259.0 246922.0 233392.0 265473.0 287648.0 254632.0 329080.0 310898.0 False True 219701.74739929728 239527.72228668694 287774.87452546525 278182.2998825173 263113.08777723566 247121.47636622307 273733.3673179303 273633.93283509655 247982.64344608152 291056.2234668311 0.7548429811339684 0.8229603182286314 0.9887260650114915 0.9557682586856594 0.9039940278316027 0.8490506522166332 0.9404827839014583 0.9401411506539389 0.8520094176042993 1.0 18.15093834056668 4.426951186384906 5.262984048654871 0.9250821855841689 0.7694151677082502 0.5909850289212609 0.04792167806652684 0.11282901032223352 6.766644207804788 0.011650318341464133 0.03487290938835841 26727.059863026185 -4.426951186384906 -0.15566701787591863 CFNDLKAEELLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 CFNDLKAEELLLK 13 1 P55212;D6RHU3 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 0 78.373 0.021345 133330000.0 72208.0 84316.0 71496.0 80418.0 67631.0 76740.0 80069.0 61650.0 109870.0 84211.0 False True 71819.24015106307 87122.40708990171 81562.01534562773 90598.91055455666 76243.40696965723 71435.1444265291 76195.75657671664 66250.63605235684 82794.01068257255 78836.58188333562 0.9109887622644905 1.1051012741626427 1.0345706700770625 1.1491988666965196 0.9671069590825762 0.9061167128255339 0.9665025392586536 0.84035398884234 1.050197873939959 1.0 16.26657760637653 3.017890111732589 24.530349495264183 0.9356687826148702 1.053472331142616 0.25084892901322486 0.07787960653485893 212.74704767009868 291709.4902715807 0.02155527052581262 0.025758564336929787 1042.053728214181 -3.017890111732589 0.11780354852774577 CFSEENHEPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 CFSEENHEPLR 11 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;; 197.43 5.7088e-08 2944030000.0 2457250.0 2576100.0 2557500.0 2506970.0 2454070.0 2789190.0 2737820.0 2508630.0 3188160.0 2866670.0 False True 2444020.4390261425 2661843.931214663 2917573.7698114966 2824352.1449545766 2766581.268087512 2596379.8603470237 2605381.187111941 2695836.7091650236 2402480.6871552765 2683716.6663203333 0.9106849727088216 0.9918498344552669 1.0871392671312827 1.0524032512072408 1.0308768070814252 0.9674567710260347 0.9708108235897351 1.004516140990885 0.8952065310416462 1.0 21.355800936215672 2.732758965194821 24.02571523514527 0.9711931850591882 1.0194585976671846 0.16968580130582633 0.05110643330484304 528.0884784179186 2186905.680315902 0.017004705464106318 0.016441653591817353 540.4542858618145 -2.732758965194821 0.04826541260799644 CFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR ddPTM_BT-474_Trastuzumab_2h_R1 3 CFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR 33 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ;; 231.93 3.6844e-37 992020000.0 577682.0 589417.0 572967.0 585130.0 600322.0 675660.0 637425.0 642540.0 713050.0 691560.0 False True 574571.8242985039 609035.388534899 653635.7732815569 659207.39800527 676769.4483127339 628953.2145325599 606590.3175500324 690489.5975520082 537328.3818804799 647424.0487256959 0.887473712830741 0.9407055387170802 1.0095945224279008 1.0182003577141858 1.0453263971963933 0.9714702686292058 0.9369289243177864 1.0665183026658909 0.8299481351335128 1.0 19.304351430241724 4.500678720524435 3.227001677943674 0.9912044880755477 0.8907006670122081 0.18528292311436023 0.06263678237131483 0.3775595813402165 7.505929984652899 0.01475065901383277 0.07025432196471217 31672.235686453234 -4.500678720524435 -0.10050382106333966 CFVEHILCTKPLPCR ddPTM_BT-474_Trastuzumab_2h_R1 1 CFVEHILCTKPLPCR 15 1 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 0 64.65 0.038386 117230000.0 163930.0 191290.0 169560.0 146670.0 111620.0 162510.0 180140.0 134640.0 240530.0 182860.0 False True 163047.41909433514 197656.97201275313 193432.57415805935 165238.40696158615 125834.14537642685 151276.06620739165 171425.939998373 144687.520488067 181254.6044368725 171189.7182456776 0.9524369849148459 1.1546077301739108 1.1299310270518736 0.96523557988716 0.7350566766856867 0.8836749528981204 1.0013798828289233 0.845188145472751 1.0587937540544965 1.0 17.385236529672273 3.567050665386751 5.382756184234565 0.9077147879499731 1.0839894917742634 0.32974601670779813 0.09957016214586173 0.22553477312863784 10.385362620408886 0.02627701922376407 0.040884554111999566 3690.2064651114924 -3.567050665386751 0.17627470382429034 CGAALAGHQLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 CGAALAGHQLIR 12 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 152.62 6.9959e-05 459240000.0 430950.0 426000.0 459130.0 397220.0 401780.0 474170.0 468590.0 415860.0 588630.0 471630.0 False True 428629.81308304647 440179.15247756167 523771.51317049953 447508.0112721156 452944.3014633653 441391.74397611874 445922.5115123656 446893.5848942923 443570.0237378967 441530.16961724224 0.9707826159526562 0.9969401476215051 1.1862643805847999 1.0135389200245488 1.0258513067318091 0.9996864865627563 1.0099479994740361 1.0121473358925837 1.0046199654316323 1.0 18.752152494575792 3.5200463312254495 24.999886540143834 1.0100467756454996 1.0548920449948458 0.11502813828812486 0.05308807577873855 1003.2517613705427 584298.4233366695 0.014286359816558987 0.022130905704038546 3311.664489611804 -3.5200463312254495 0.044845269349346184 CGADWEEYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 CGADWEEYIK 10 0 Q9H993;F5GZY1 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 115.71 0.0056121 0.0 120060.0 90341.0 100690.0 110360.0 104640.0 115750.0 119450.0 118000.0 146650.0 131000.0 False True 119413.61029991992 93347.94557271237 114866.27678683081 124331.56468453426 117965.28375012826 107748.47494619171 113671.74715668737 126805.75919185887 110510.07250932237 122639.46784525755 0.9736964159905854 0.7611574578136276 0.936617540870002 1.0137973269862173 0.9618867875305279 0.878579113553764 0.9268773678968882 1.0339718641951237 0.9010971300752899 1.0 16.90406381644606 4.019085501651406 24.984779232825975 0.9612412690383547 0.862792023371641 0.23037264085790554 0.06619299882907442 293.7518045681362 384544.15170494484 0.015820891024237234 0.0341695684263706 10449.259185820683 -4.019085501651406 -0.09844924566671376 CGAQDKEHPR ddPTM_BT-474_Trastuzumab_2h_R1 5 CGAQDKEHPR 10 1 Q96GX9 Q96GX9 APIP Methylthioribulose-1-phosphate dehydratase 0 ;;;; 160.18 4.4801e-06 430948000.0 724319.0 644964.0 643717.0 663302.0 668595.0 793435.0 802768.0 698016.0 1000497.0 808673.0 False True 720419.3469834067 666431.2368510287 734346.7583115344 747275.9651901135 753736.6101769593 738586.7059950897 763935.0449684346 750105.4983734298 753937.9203229435 757062.7968002124 0.9515978727634191 0.8802852810463738 0.969994512232421 0.9870726290454852 0.9956064587543973 0.9755950353349638 1.0090775140414618 0.9908101435492693 0.9958723681965665 1.0 19.530053448194376 4.062749153772718 5.588425000023767 0.9923300859162213 0.9163980417331842 0.7422657564218313 0.018008324746378843 0.08252801451886611 5.0225714354162525 0.0041325015883731005 0.009133620665374024 11554.446706032772 -4.062749153772718 -0.07593204418303712 CGESGHLAK ddPTM_BT-474_Trastuzumab_2h_R1 6 CGESGHLAK 9 0 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;D6RAT4;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;;;; 105.1 0.0031525 4056520000.0 5356320.0 5536430.0 5830335.0 5699393.0 6376720.0 6939550.0 6960010.0 6306130.0 7329350.0 6736308.0 False True 5327482.168263099 5720706.725707384 6651195.489819718 6420935.569428072 7188757.4942194065 6459835.242443576 6623327.726479825 6776725.442479301 5523129.900758292 6306391.056196561 0.8447751052526942 0.9071284471149799 1.054675396839585 1.0181632430039305 1.1399162262790294 1.0243315368298076 1.0502564251818551 1.0745805932571526 0.8757988287661531 1.0 22.588383202926618 4.36055435876422 3.60153108980669 1.0387756182765326 0.8556126993448271 0.4845769548768015 0.06409745756818205 0.16820052305999297 4.043248959674341 0.015396943237009108 0.05057937363800463 22937.93716731256 -4.36055435876422 -0.18316291893170555 CGESGHLAR ddPTM_BT-474_Trastuzumab_2h_R1 6 CGESGHLAR 9 0 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;;;; 196.88 2.8915e-05 3043620000.0 2439990.0 2637910.0 2683770.0 2900460.0 2864560.0 3197990.0 3207730.0 2955190.0 3529960.0 2985090.0 False True 2426853.364948372 2725711.2396997344 3061621.4882529783 3267657.938609133 3229344.736422662 2976920.4785587136 3052559.8451814214 3175721.283950758 2660048.6570406263 2794579.0005358756 0.8684146572642998 0.9753566598679316 1.0955573228260485 1.1692845104692127 1.1555746807670915 1.065248281758316 1.0923147438652034 1.1363862976647991 0.9518602467600836 1.0 21.41419952874798 4.462409660353145 2.6404089801907413 1.0958732849496713 0.8707471199436269 0.5223987364985976 0.06468301223677864 0.21699866906282925 2.734507717791142 0.015983057778053734 0.08153266386403792 29000.77877045813 -4.462409660353145 -0.22512616500604443 CGETGHVAINCSK ddPTM_BT-474_Trastuzumab_2h_R1 4 CGETGHVAINCSK 13 0 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;; 159.58 4.5328e-05 3484210000.0 3408410.0 2458990.0 2628780.0 2230340.0 2625140.0 3376910.0 3487910.0 3305510.0 3693480.0 3006520.0 False True 3390059.4992699507 2540835.995659158 2998889.374234633 2512700.8153180904 2959436.0185761834 3143472.1600910923 3319186.4681898826 3552183.941239672 2783271.3440963654 2814641.3195887273 1.2044374804265656 0.9027210600427136 1.0654605804880417 0.8927250509081718 1.0514433927974216 1.1168286837167634 1.1792573515814366 1.2620378719369876 0.9888547164876604 1.0 21.42451965524582 2.771586068818137 3.337074292944611 1.144474277023489 1.0086577377732189 0.09247120921514218 0.11280233035883558 0.3573567167334035 8.239734012018664 0.03573641013956667 0.03655448388841834 590.9980784283913 -2.771586068818137 -0.13581653925027015 CGGIDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 CGGIDKR 7 1 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5;P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;; 107.66 0.01191 714240000.0 1015800.0 880860.0 855520.0 846870.0 858940.0 892760.0 1115570.0 953780.0 1350070.0 1075600.0 False True 1010331.0456659889 910178.8926088852 975969.7796868542 954083.6551684615 968320.9176637545 831045.602530989 1061605.6172087544 1024955.9067967057 1017363.3385111555 1006954.2871325095 1.003353437764385 0.9038929614181291 0.969229479588503 0.9474945063150711 0.9616334425877755 0.8253061863389515 1.054273893834719 1.0178772958159392 1.0103371637736283 1.0 19.94156675989412 2.179566414412735 24.999978366014187 1.02280690406654 0.9370418084266807 0.44950893093437305 0.04628312705980086 67.61150488234601 28651.079428815072 0.016541419863640307 0.012216652523828633 151.20509118201105 -2.179566414412735 -0.08576509563985923 CGGVEQASSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 CGGVEQASSSPR 12 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 CGGVEQAS(0.001)S(0.045)S(0.954)PR;CGGVEQASSS(1)PR;CGGVEQAS(0.006)S(0.131)S(0.862)PR;CGGVEQASS(0.043)S(0.957)PR;CGGVEQAS(0.001)S(0.152)S(0.847)PR 193.19 3.2762e-06 1072440000.0 1630820.0 1699480.0 1628040.0 1796950.0 1760230.0 1971750.0 1936290.0 1756900.0 2309470.0 1858920.0 True False 1622039.8463211348 1756046.164442647 1857253.8808226418 2024443.6857545641 1984384.856799392 1835447.5635002428 1842624.2553538885 1888008.799357433 1740332.063812512 1740282.1340985184 0.9320556790990479 1.0090583187836348 1.0672142432725231 1.1632847606076493 1.1402661774881238 1.054683908739327 1.0588077756187413 1.0848866183042432 1.0000286905858626 1.0 20.730889783713657 4.50107044795757 2.4157499536682723 1.0790074015768147 0.9294736969767974 0.4323033032729545 0.049503856506909236 0.31998296858560504 3.14311223309088 0.012861125940907235 0.07985551948695403 31700.81647944763 -4.50107044795757 -0.14953370460001736 CGHEGMAYHTR ddPTM_BT-474_Trastuzumab_2h_R1 2 CGHEGMAYHTR 11 0 Q9P1U0 Q9P1U0 ZNRD1 DNA-directed RNA polymerase I subunit RPA12 0 ; 110.66 0.0010203 32512000.0 32662.0 45086.0 38530.0 42724.0 37543.0 40750.0 42562.0 24355.1 42717.0 37164.0 False True 32486.151421089362 46586.66025493744 43954.689091236345 48132.8540194096 42323.87851520514 37933.048415181926 40503.11345737064 26172.601234691894 32189.96772847411 34792.161702298814 0.9337204080349774 1.3389987277467537 1.263350333541711 1.3834395928387895 1.2164774030815304 1.0902756988702884 1.1641447807680914 0.7522556792716504 0.9252074649430946 1.0 15.086474698642341 1.8578693072187096 5.5033426537953725 0.8748547087177206 1.2142658444565013 0.5290159315391709 0.1321133831537813 0.16073303358298488 6.377230811770661 0.05978588161308127 0.03537484679526281 72.08905080561662 -1.8578693072187096 0.3394111357387807 CGHTNNLRPK ddPTM_BT-474_Trastuzumab_2h_R1 3 CGHTNNLRPK 10 1 M0R2S1;P62987 M0R2S1 UBA52 Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40 0 ;; 190.86 5.14e-07 1576740000.0 2131910.0 1774140.0 1965320.0 1858440.0 1909400.0 2421010.0 2307970.0 1337500.0 2667560.0 1916560.0 False True 2120432.033437468 1833191.1774097236 2242019.973132329 2093718.3134498557 2152550.7720995294 2253651.27714453 2196324.6737984046 1437311.0416873842 2010175.5814726804 1794243.4999504336 1.1817972496464642 1.0217070188412922 1.2495628231030322 1.1669086796233037 1.1996982417152378 1.2560453902755047 1.2240950984964296 0.8010679942421919 1.120347144369319 1.0 20.77494426355702 1.7584310582364369 24.999999999999996 0.9577907038702205 1.1843604420992626 0.5074811436555334 0.09525738561568295 6.432392182733188 8100.31637663698 0.042460170710634106 0.023546701986245727 57.33648409340895 -1.7584310582364369 0.22656973822904214 CGLGQENS(ph)DNEHLVENEVSLLLEESDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 CGLGQENSDNEHLVENEVSLLLEESDLR 28 0 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 CGLGQENS(1)DNEHLVENEVSLLLEESDLR;CGLGQENS(1)DNEHLVENEVSLLLEESDLR;CGLGQENS(1)DNEHLVENEVSLLLEESDLR;CGLGQENS(1)DNEHLVENEVSLLLEESDLR;CGLGQENS(1)DNEHLVENEVSLLLEESDLR 239.41 2.0049e-45 984593000.0 142448.0 148403.0 136100.0 143387.6 143977.0 167946.0 169661.0 134617.0 173932.0 157765.0 True False 141681.0757954606 153342.50414349203 155261.69699759342 161540.45545813808 162311.6175314622 156336.28832235959 161453.8492620405 144662.8041112752 131068.7891693928 147696.30263058803 0.9592730032641882 1.0382284553664558 1.0512226388356358 1.093733916022099 1.098955184663149 1.0584983207967062 1.0931475357637237 0.9794612426629251 0.8874209227648487 1.0 17.172274185148307 1.5704798816868728 4.768465181742043 0.9406485200427452 1.0581060306283803 0.511428931141249 0.04570673301857791 0.11646745264679408 5.773928247166092 0.026544911842172832 0.011869123776693588 37.194599068922 -1.5704798816868728 0.11745751058563503 CGLGQENS(ph)DNEHLVENEVSLLLEESDLRR ddPTM_BT-474_Trastuzumab_2h_R1 2 CGLGQENSDNEHLVENEVSLLLEESDLRR 29 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 CGLGQENS(1)DNEHLVENEVSLLLEESDLRR;CGLGQENS(1)DNEHLVENEVSLLLEESDLRR 165.48 2.8906e-12 46494000.0 13952.0 15970.9 14894.599999999999 18829.4 15533.7 19056.3 19865.4 17538.5 21643.8 22627.5 True False 13876.88398221293 16502.48175188708 16991.630213815963 21213.200109378122 17511.824619546715 17738.98283470507 18904.434708802462 18847.311928698466 16309.97550206119 21183.39357762261 0.6550831400721356 0.7790291811090986 0.802120309550653 1.0014070706681766 0.8266770173238716 0.8374004273538074 0.8924176685633808 0.8897210855114405 0.7699415791098964 1.0 14.370646107001743 4.500631419726592 1.670515596889456 0.8793795259117191 0.6342791434374617 0.506805291364949 0.07058564281253743 0.48709570224045345 1.8849139359306961 0.0179256936166485 0.16618694803708742 31668.786320874093 -4.500631419726592 -0.24510038247425736 CGLGQENSDNEHLVENEVSLLLEESDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 CGLGQENSDNEHLVENEVSLLLEESDLR 28 0 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 0 ; 144.7 1.0086e-07 25098000.0 20640.2 24479.9 24536.1 27496.5 24466.2 28270.3 28302.0 23721.9 30002.5 25663.8 False True 20529.075456541803 25294.698673087943 27990.569608395643 30977.55408072033 27581.825547471235 26316.040702128044 26932.924135860725 25492.148635367445 22608.78588790281 24025.91431211539 0.8544555345471178 1.0528089938426506 1.1650157927301448 1.289339239218858 1.1480031598032767 1.0953190109754878 1.120994763653154 1.0610272018872842 0.9410166703417412 1.0 14.552303713709996 -0.8568003283899113 8.130620907240253 1.0000000004278415 1.0907913179935431 0.03714434205081796 0.11390877921454497 0.0 0.0 0.1135426065963452 0.026762249025957377 0.13905918239749995 0.8568003283899113 0.09079131756570158 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_BT-474_Trastuzumab_2h_R1 66 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748 NPM1 Nucleophosmin 1 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.999)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.257)GPVHIS(0.229)GQHLVAVEEDAES(0.514)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.035)GPVHIS(0.03)GQHLVAVEEDAES(0.935)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHIS(0.003)GQHLVAVEEDAES(0.997)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHIS(0.001)GQHLVAVEEDAES(0.998)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.999)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.999)EDEEEEDVK;CGS(0.007)GPVHIS(0.004)GQHLVAVEEDAES(0.989)EDEEEEDVK;CGS(0.072)GPVHIS(0.16)GQHLVAVEEDAES(0.768)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVK;CGSGPVHIS(0.001)GQHLVAVEEDAES(0.998)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.032)GPVHIS(0.028)GQHLVAVEEDAES(0.94)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK 290.48 5.818699999999997e-81 124573879000.0 9937944.899999999 10956287.2 10781518.1 10897775.700000001 11397997.2 14564852.89 13220926.799999999 11007077.0 16550726.200000001 13643583.2 True False 9884440.108867867 11320960.596236518 12299462.133844726 12277432.986245885 12849464.58219771 13558018.891690109 12581380.061839 11828480.978544496 12472021.49637875 12772838.039316744 0.7738640448146334 0.8863308656532616 0.9629388626071281 0.961214175616576 1.005999179089651 1.0614727008951699 0.9850105374476363 0.9260652129256338 0.9764487311267837 1.0 23.606575782074213 4.677608198438079 1.3694597992452626 0.9855765192613316 0.6985245809506186 0.811824252402254 0.03239711862798105 0.5443061512998197 0.9925694047833583 0.010434495142566174 0.2098384228950323 47600.136534643156 -4.677608198438079 -0.28705193831071296 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGK ddPTM_BT-474_Trastuzumab_2h_R1 4 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748;P06748-3;P06748-2;E5RI98 P06748 NPM1 Nucleophosmin 1 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK 357.52 9.942299999999993e-146 2664810000.0 371501.0 683230.0 868049.0 1158065.0 1112743.0 1265336.0 1477226.0 1054863.0 1803570.0 1419379.0 True False 369500.87989364093 705970.8975287438 990262.753982835 1304675.9102609213 1254444.2253055146 1177866.3006005555 1405766.9348286674 1133582.23354578 1359104.3400998216 1328793.0170285013 0.27807256296389427 0.531287332550455 0.7452347666586171 0.9818503661153251 0.944047875951931 0.8864181896700105 1.0579276958967607 0.8530916546210792 1.0228111697479445 1.0 20.341684966216313 4.361484103536755 1.3730081258536408 0.9574158038473725 0.20840878417963685 0.9319237540346305 0.06167999144719701 0.14897874455466498 0.4051292030123464 0.016756511474387868 0.1290249277940755 22987.095681513532 -4.361484103536755 -0.7490070196677356 down CGYAGSNFPEHIFPALVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 CGYAGSNFPEHIFPALVGR 19 0 P61160;P61160-2;A0A1B0GWD0;A0A1B0GWH0 P61160 ACTR2 Actin-related protein 2 0 ; 148.24 9.7414e-08 963330000.0 835540.0 796940.0 868760.0 788450.0 794110.0 976500.0 912500.0 864960.0 896210.0 857860.0 False True 831041.54547722 823465.6661395972 991073.8566027123 888267.6891584004 895235.2014412695 908996.8534337468 868358.8889114865 929507.707377883 675351.0540987385 803110.6403491026 1.0347784025324034 1.0253452323600725 1.234043986980305 1.1060340188897027 1.114709675683193 1.1318451129456046 1.0812444080357613 1.1573843760479094 0.8409190716302445 1.0 19.61523922841532 1.2450244355846625 24.99980362917489 0.9204595160500803 1.1133149111611689 0.5651246513587026 0.06671172162683095 92.29195882813096 356963.6141562287 0.04536319281443649 0.015689622930130057 17.58022526336281 -1.2450244355846625 0.19285539511108862 CHEFLIFEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 CHEFLIFEDR 10 0 P11172-2;P11172-3;P11172;P11172-4;E9PFD2 P11172-2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 0 ;; 189.72 9.799e-07 542230000.0 427940.0 445520.0 370030.0 425400.0 428260.0 462660.0 418420.0 124970.0 437950.0 267320.0 False True 425636.0185886034 460348.86387747247 422127.00764158275 479255.59638275555 482796.3725041091 430677.40318449226 398179.4260803779 134295.89598480193 330023.0907293407 250259.40873583354 1.7007792863360125 1.839486739790883 1.6867577917406797 1.9150352780088427 1.9291837015955502 1.7209239219417427 1.5910667578563824 0.5366267612601959 1.3187240088052128 1.0 17.933064783983045 1.9114102897372693 5.650554473044636 0.9236752911076591 1.795750460198992 0.793037111572824 0.19350660719664126 0.08822558840319925 4.35811891260977 0.082056990374373 0.04953994346544737 81.54743208617664 -1.9114102897372693 0.8720751690913329 CHTPPLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 CHTPPLYR 8 0 Q02543;M0R117 Q02543 RPL18A 60S ribosomal protein L18a 0 ; 151.29 0.00047547 1462250000.0 347060.0 347800.0 305530.0 341710.0 312007.0 299335.0 358390.0 89666.0 349310.0 229234.0 False True 345191.46752199135 359376.3127504603 348545.9682856332 384970.45096368424 351739.24203962454 278642.67600879713 341053.3065172467 96357.33223472233 263227.2310141931 214604.08986289895 1.6085036764328158 1.6746014159378317 1.6241347893616742 1.7938635335870103 1.6390146257899147 1.2984033817193772 1.5892209078360555 0.4490004468054675 1.2265713630264796 1.0 17.711318045259567 1.7600875764515738 24.999999999999996 0.8494787865849618 1.604356030533648 0.6965687702291701 0.21483286507564917 5.1713591727793755 6010.647685571583 0.09542806250313988 0.05292103180205924 57.55559877853629 -1.7600875764515738 0.7548772439486862 CHWTQR ddPTM_BT-474_Trastuzumab_2h_R1 2 CHWTQR 6 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 87.58200000000002 0.052277 113177000.0 124152.0 211813.0 199302.0 248205.0 206669.0 191941.0 175892.0 88826.1 144596.0 151586.0 False True 123483.57942658404 218863.06766133776 227361.98923596143 279627.72755096783 232987.07212686597 178672.57045051368 167383.43198730878 95454.75463179643 108962.2532871325 141911.65170069624 0.870144050518286 1.5422487515185759 1.6021375729984966 1.970435296889691 1.6417754943636027 1.2590408772589678 1.1794904081613728 0.672635076033916 0.7678175257726065 1.0 17.114633521627415 2.1547058375907846 1.9093209939770235 0.7890419808901241 1.5442255384314878 0.5415214122972047 0.27584387354864315 0.24946946493644906 1.7844568786482298 0.1512654157044763 0.08966622882438038 142.79264477824384 -2.1547058375907846 0.7551835575413637 CIALAQLLVEQNFPAIAIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 CIALAQLLVEQNFPAIAIHR 20 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6UJC5;A0A140T9X9;A0A140TA18;H0Y400;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ; 230.89 1.3693e-25 1377340000.0 895220.0 815460.0 825640.0 811020.0 906030.0 950130.0 884120.0 875400.0 990300.0 867770.0 False True 890400.2349882914 842602.0931440208 941882.9354084708 913695.0488442455 1021407.5500394569 884449.7494654431 841351.7379336163 940726.7931911302 746253.8343401438 812388.1756647249 1.096028058581397 1.0371914786359042 1.159400104066986 1.1247025451799908 1.2572900254286752 1.0887033759960314 1.035652368087697 1.1579769639327826 0.918592683515528 1.0 19.631809715752304 1.2390740522222663 24.999997600416716 0.9592963000265609 1.1196427023243705 0.5025739803259992 0.06379939743631301 10.848239172460458 528455.4502182836 0.049813816099190646 0.015657615130043413 17.340996565551194 -1.2390740522222663 0.1603464022978096 CIDHYTK ddPTM_BT-474_Trastuzumab_2h_R1 5 CIDHYTK 7 0 A0A087WW66;Q99460-2;Q99460;C9J9M4;H7BZR6 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;;;; 117.93 0.0051196 937760000.0 2712280.0 2975480.0 2812190.0 2837390.0 2902990.0 3276460.0 3326410.0 3046190.0 3911830.0 3297790.0 False True 2697677.385842639 3074517.0530843604 3208121.9080063323 3196603.2830758514 3272668.56913021 3049966.032157224 3165498.8401797945 3273512.166039394 2947811.912336465 3087322.2188199344 0.8737919772020981 0.995852339073157 1.0391276584122053 1.0353967148585117 1.0600346634311208 0.9879001335089057 1.025321821247975 1.060307908933013 0.9548118736576856 1.0 21.557924631880137 4.723170819422433 2.9761696683036702 1.0252450016125891 0.8514350867419628 0.6595377939738869 0.03125598621846911 0.20043922581409543 2.653560996507229 0.007367938224400415 0.0815081116946999 52865.31440494616 -4.723170819422433 -0.17380991487062636 CIDVHLK ddPTM_BT-474_Trastuzumab_2h_R1 4 CIDVHLK 7 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 81.958 0.02579 798140000.0 2082120.0 2036720.0 2041880.0 1991860.0 1900780.0 2505840.0 2540620.0 2123730.0 2810410.0 2362370.0 False True 2070910.0972652787 2104510.9939767625 2329358.9556608777 2244029.2717699953 2142833.066194275 2332617.178912871 2417720.504489101 2282213.5166824264 2117822.1130646095 2211601.5240732883 0.9363848210102123 0.9515778367256285 1.0532453203281873 1.014662563460791 0.9689055839714033 1.0547185618757842 1.0931989683368397 1.0319279905717764 0.9575966059039616 1.0 21.076660040326367 4.313424641117383 6.493366319882229 1.0259385927404976 0.9414598606777557 0.39079276686407205 0.03864862505620964 0.20197672643308967 13.729623289889133 0.009821627768315522 0.027310765866526362 20579.017719504704 -4.313424641117383 -0.08447873206274192 CIELDER ddPTM_BT-474_Trastuzumab_2h_R1 1 CIELDER 7 0 Q9UNS2-2;Q9UNS2;H7C3P9 Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 0 88.94200000000002 0.042427 337820000.0 633890.0 742340.0 708150.0 746160.0 704460.0 772150.0 750330.0 706170.0 895900.0 790110.0 False True 630477.2066718003 767048.3381459936 807851.3646498572 840623.7794944918 794168.8053384493 718773.0879455885 714033.6713610468 758867.991258602 675117.4494449504 739684.5033527964 0.8523596260486898 1.0369939273692557 1.0921566708347656 1.1364626076173883 1.0736588393276996 0.9717292773981043 0.9653219286391954 1.0259346894775432 0.9127100086385744 1.0 19.496550525576918 2.7281511946899935 24.027591796342122 0.9799948472140881 1.0466949008315374 0.14513903349325763 0.07485580579822057 839.3020286086231 1937318.1049043492 0.025064135351480374 0.023893025897229938 534.7504943041771 -2.7281511946899935 0.06670005361744924 CIESLIAVFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 CIESLIAVFQK 11 0 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 0 ; 223.55 1.5958e-11 341140000.0 833230.0 824220.0 755560.0 728230.0 644500.0 838250.0 949760.0 826060.0 1109600.0 826300.0 False True 828743.9822605567 851653.6644484886 861936.2805547495 820423.8433328951 726573.2547492136 780303.7505282513 903816.4803644638 887704.7918476857 836153.9478782426 773564.8265689788 1.0713310039396646 1.100946727665812 1.1142392349684873 1.0605754232282663 0.9392532206664712 1.008711518062632 1.1683784594669266 1.1475506141934557 1.0809099886131943 1.0 19.561162672446827 2.243587339572003 24.999982586046034 1.1173987817874027 1.05000845747349 0.10503580963129344 0.06315120883816269 213.70656505987452 1062858.0260809641 0.02375281898585602 0.01930912412727433 175.2214781079145 -2.243587339572003 -0.06739032431391268 CIIPNHEK ddPTM_BT-474_Trastuzumab_2h_R1 5 CIIPNHEK 8 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749;P35749-2;P35749-4;P35749-3 P35579;P35580;P35749 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 0 ;;;; 126.62 0.0012113 3672920000.0 4662160.0 4307970.0 3995150.0 3804870.0 3712110.0 4967990.0 4997720.0 5299650.0 5802050.0 4884700.0 False True 4637059.448574676 4451358.177227146 4557632.393533691 4286566.151877894 4184825.205100234 4624564.544690541 4755961.190455576 5695136.79407742 4372212.520986797 4572954.263997931 1.014018330574927 0.9734097303950556 0.9966494590630686 0.937373501770022 0.9151250949624908 1.0112859822585432 1.040019408875008 1.24539552886287 0.9561023943336722 1.0 22.12469505955295 2.192749460544657 3.2832849342358603 1.1025442208541134 0.9691622832752521 0.18166893766027348 0.07840298112350648 0.25705371951215256 5.6920109582106795 0.03151514396486823 0.022654601735107617 155.86530745151956 -2.192749460544657 -0.1333819375788613 CIIVEEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 CIIVEEGK 8 0 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 111.82 0.0073532 211930000.0 275250.0 244180.0 226800.0 179940.0 205900.0 302220.0 283930.0 263430.0 348400.0 268890.0 False True 273768.08458315 252307.38369007313 258731.46861906056 202720.3855503363 232120.1445350859 281328.2427493568 270195.2211820695 283088.48427043593 262541.48832081776 251729.20999168922 1.0875499295142919 1.0022968081392025 1.0278166313222152 0.8053113325904017 0.9221025424214747 1.117582829416756 1.0733566485629138 1.124575428810117 1.0429520210605894 1.0 17.941513107165694 2.7360522604251374 24.992174826005556 1.0831596865289401 0.9650364715896824 0.3019717504160965 0.07695659944431257 261.65222098119494 2606974.306268414 0.025605663954131174 0.02518373770545296 544.5681790083986 -2.7360522604251374 -0.1181232149392577 CIIVEEGKEILVGDVGVTITDPFK ddPTM_BT-474_Trastuzumab_2h_R1 5 CIIVEEGKEILVGDVGVTITDPFK 24 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ;;;; 187.81 1.6426e-17 642320000.0 1050927.0 927424.0 918896.0 923743.0 956938.0 1238543.0 1379470.0 1214600.0 1948815.0 1379306.0 False True 1045268.9258009656 958292.7472003533 1048268.5696127887 1040688.7690864954 1078798.3820840996 1152925.4376266173 1312739.7660128525 1305239.6196138288 1468555.6560331092 1291277.5101967235 0.80948434209291 0.7421276523699072 0.81180734686 0.8059373456662686 0.8354504539614779 0.8928564375375603 1.0166209475861308 1.010812632688831 1.1372889595276678 1.0 20.300367654833952 2.3989315081673133 1.175791634093452 1.061858471910698 0.7866144110344169 0.8946667548636834 0.03918296416414852 0.13084052938704235 0.36027786779443316 0.022156006838592153 0.014670943356966453 250.57140500342385 -2.3989315081673133 -0.27524406087628117 CKAEHDQLLLNYAK ddPTM_BT-474_Trastuzumab_2h_R1 1 CKAEHDQLLLNYAK 14 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 137.8 1.1508e-05 1133200000.0 918910.0 900690.0 936010.0 855150.0 963790.0 1206300.0 1185200.0 1071200.0 1741700.0 1199200.0 False True 913962.6906604983 930668.9221713977 1067792.0720552334 963411.9023194954 1086522.9436691145 1122911.320324759 1127867.3480963216 1151138.3834433833 1312481.3725842964 1122666.0293132272 0.814100246018489 0.8289811020118952 0.9511217442897404 0.8581464809341806 0.9678060218262571 1.0002184897423876 1.0046330062968738 1.0253613749652455 1.1690755205153804 1.0 20.098497387969108 3.182277459565925 0.5650237856414788 1.0715244797268804 0.8078984576710174 0.7235700692550799 0.0531317982672069 0.5364140105461134 0.35462946928459316 0.03879683688652773 0.07365851133439517 1521.5192787906456 -3.182277459565925 -0.26362602205586294 CKDDEFTHLYTLIVRPDNTYEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 CKDDEFTHLYTLIVRPDNTYEVK 23 2 P27797;K7EJB9 P27797 CALR Calreticulin 0 ; 292.58 8.759099999999996e-62 6706300000.0 4636300.0 3686800.0 3382100.0 3297300.0 3840400.0 5111900.0 5508900.0 5138700.0 7442600.0 4627700.0 False True 4611338.675941356 3809512.9092823397 3858270.2822598084 3714737.8419202096 4329452.176165827 4758526.385118243 5242413.460958344 5522175.887789881 5608470.955730532 4332356.224026695 1.064395086065975 0.8793166379429437 0.8905708770812367 0.8574405357802176 0.9993296839616367 1.098369141191129 1.2100605744016588 1.2746356952746862 1.2945544331342533 1.0 22.046720441427333 2.617936041014668 1.9108299270700486 1.2245913835951283 0.9192162335539374 0.6260606792803509 0.09367417055005337 0.1881841112927147 1.3684002614753958 0.03546066686021205 0.03194257356942646 414.89293643467835 -2.617936041014668 -0.30537515004119087 CKDGVVFGVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 CKDGVVFGVEK 11 1 P25788-2;P25788 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ; 122.64 0.00035258 905680000.0 3421000.0 3063300.0 3115100.0 2800800.0 2421900.0 3322000.0 3638600.0 3144400.0 4931800.0 3341400.0 False True 3402581.716108831 3165260.088696046 3553679.0030654166 3155380.992827505 2730314.609274041 3092357.9591468535 3462587.017198176 3379051.094939668 3716423.9727342436 3128148.9912835355 1.087730068353519 1.0118635964961769 1.1360325268929337 1.0087054681921641 0.8728211529827881 0.9885583991566859 1.1069124350683228 1.0802078495478513 1.1880584918077475 1.0 21.576877798039416 2.230474493015011 24.851870401220797 1.0985366014901883 1.0157525617030405 0.18970751602861347 0.07681891791348573 281.37062142014616 864756.2199943601 0.02970249992352845 0.022320382479530335 170.01001004252137 -2.230474493015011 -0.08278403978714777 CKELGITALHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 CKELGITALHIK 12 1 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 68.44 0.031642 167960000.0 85941.0 93967.0 96374.0 92413.0 97885.0 115120.0 118270.0 97096.0 159550.0 112770.0 False True 85478.30320494276 97094.63479074887 109942.62150217532 104112.47632468159 110350.07454015003 107162.02536333125 112548.82826472497 104341.7965634977 120231.04036046646 105572.92205274555 0.8096612421340079 0.9196925963860239 1.0413903429446294 0.9861664743225133 1.0452497893827146 1.0150521864857711 1.0660766612909907 0.9883386244757651 1.1388435407745703 1.0 16.687880325898057 4.557273604287512 1.8853430353467875 1.033651291431225 0.7790615345694618 0.7349261258005486 0.043267722535197436 0.25818231236488326 1.268764453888947 0.010419864719580353 0.1015894590588598 36080.58781116829 -4.557273604287512 -0.2545897568617632 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIK ddPTM_BT-474_Trastuzumab_2h_R1 2 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIK 36 3 P63279;H3BQQ9;B0QYN7 P63279 UBE2I SUMO-conjugating enzyme UBC9 0 ; 201.71 2.2488e-30 1367360000.0 1670690.0 1192580.0 1224610.0 1141150.0 1121260.0 1777100.0 1811950.0 1675240.0 2350210.0 1715410.0 False True 1661695.190671111 1232274.3043701677 1397024.4434990652 1285619.4729952544 1264045.8147713002 1654253.2598434293 1724299.0561788147 1800254.9154963559 1771032.2367005418 1605931.065163612 1.03472386001937 0.7673270236195499 0.8699155734662476 0.8005446191828139 0.7871108805299307 1.0300898312063564 1.0737067696010623 1.1210038553634594 1.1028071348256219 1.0 20.614978535603395 2.6021528202186994 4.254386531135485 1.084620686047453 0.8459858587210182 0.6659329012943599 0.07577563028865603 0.1261550923467763 3.776792775350073 0.02437478080089079 0.02274034371246929 400.0855077061616 -2.6021528202186994 -0.23863482732643482 CLAFHDISPQAPTHFLVIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 CLAFHDISPQAPTHFLVIPK 20 0 P49773;D6REP8;D6RE99;D6RD60 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 ; 215.75 6.7855e-25 7651800000.0 1990170.0 1819310.0 1812520.0 1795700.0 1672100.0 2246660.0 2169600.0 1933790.0 2651100.0 2207530.0 False True 1979455.1458486745 1879864.633553879 2067707.0612937387 2023035.4358827304 1885032.0236868258 2091353.6822687779 2064648.1593231375 2078099.2293866505 1997771.9279199792 2066643.5454384813 0.9578115927237428 0.9096220960325438 1.0005146102033922 0.9788990657571291 0.9121224740703299 1.0119566515884353 0.9990344797874079 1.005543134893027 0.9666746509476604 1.0 20.978858143585835 2.7131934311337615 24.89287530088675 0.9978909078527906 0.9536636197673365 0.3922711949949803 0.02784059209953505 776.7631937747999 762238.6555656852 0.009021073818583556 0.008508048712170063 516.6464280376711 -2.7131934311337615 -0.044227288085454064 CLATHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 CLATHGR 7 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 76.833 0.092327 27735000.0 23623.0 25978.0 22701.0 26208.0 19839.0 19659.0 18587.0 15100.0 21061.0 22300.0 False True 23495.816392762023 26842.66202596738 25897.103479370802 29525.93011283322 22365.379055034362 18300.019602308268 17687.875800764723 16226.838676246358 15870.798752941291 20876.794908009477 1.1254513202957102 1.2857654704299974 1.2404731470267623 1.4142942076566294 1.0713032893020271 0.8765722747646183 0.8472505419871079 0.7772667570739442 0.7602124187584172 1.0 14.349612619941553 2.887694489952009 2.805452910391775 0.8295572149196909 1.2656590699833443 0.8146298402379982 0.09251626121201222 0.10238247594416541 1.5617639091388387 0.02922475141658827 0.03178997834924734 772.1372241237864 -2.887694489952009 0.4361018550636534 CLEELVFGDVENDEDALLR ddPTM_BT-474_Trastuzumab_2h_R1 1 CLEELVFGDVENDEDALLR 19 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 0 101.6 0.0019265 0.0 7459.2 6299.7 8183.3 6754.4 10052.0 8447.2 7339.0 7036.0 8131.7 8392.6 False True 7419.0404959950265 6509.381706250931 9335.437509481299 7609.506347455763 11332.062617128146 7863.264946569931 6983.984532297429 7561.062048084062 6127.751494197464 7856.977082733643 0.9442614402298539 0.8284842424392245 1.1881716608282713 0.9685030600608829 1.442292945213152 1.0008002904641413 0.888889512945801 0.9623372918701928 0.7799120997391865 1.0 12.939758637018457 2.4749029825773756 23.71774084343144 0.9145870570185158 1.0771695682943672 0.18798172126634227 0.1628886369257194 66.65165876680337 712604.1977676065 0.05732373519243092 0.048289784532104744 298.47157861791123 -2.4749029825773756 0.16258251127585133 CLELFSELAEDKENYK ddPTM_BT-474_Trastuzumab_2h_R1 2 CLELFSELAEDKENYK 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 238.49 7.8149e-20 4834500000.0 1427010.0 960210.0 842930.0 706340.0 786960.0 1209760.0 1260900.0 1239940.0 1655320.0 1117380.0 False True 1419327.1367157158 992170.0093907978 961607.217121096 795762.5715773286 887174.691322639 1126132.138668725 1199905.4498942397 1332470.6190877417 1247388.5661515964 1046067.8517628519 1.3568212944541225 0.9484757682962682 0.919258932869965 0.7607179307119472 0.8481043460302853 1.0765383304447673 1.1470627339059678 1.2737898567881987 1.19245473804541 1.0 19.99654500238798 2.4213166525554466 3.2410477958344113 1.1858059139174706 0.9518422753851842 0.21792551215081513 0.16039004832103126 0.3135197090223813 6.76254097200591 0.06081719643529304 0.050610419773881705 263.82542872527597 -2.4213166525554466 -0.2339636385322864 CLELFSELAEDKENYKK ddPTM_BT-474_Trastuzumab_2h_R1 2 CLELFSELAEDKENYKK 17 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 252.3 2.1977e-26 528560000.0 559050.0 436250.0 366310.0 402020.0 370440.0 540670.0 564870.0 501060.0 856850.0 558830.0 False True 556040.1369162935 450770.3175313067 417883.263976403 452915.6907799612 417613.33823009906 503294.75550028053 537545.0800870486 538451.6415311259 645690.7987017593 523164.99096156657 1.0628389638502056 0.861621716512032 0.7987599919641833 0.8657224749452584 0.7982440443167542 0.9620191797911306 1.027486719054063 1.0292195594767586 1.234201083514768 1.0 18.99690647655718 2.179981506994725 1.6323709867950267 1.0937003605583533 0.8722889067736102 0.5099121802291982 0.09054410185100933 0.30341463829867193 1.5780712655805396 0.05102751187664776 0.029471371587613777 151.34967997697188 -2.179981506994725 -0.22141145378474314 CLELFTELAEDKENYK ddPTM_BT-474_Trastuzumab_2h_R1 4 CLELFTELAEDKENYK 16 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;; 252.73 1.4128e-26 4824570000.0 6165500.0 3906694.0 3623025.0 3299433.0 3730081.0 5087660.0 4986180.0 5151310.0 7612660.0 4933580.0 False True 6132305.633051439 4036725.94814361 4133115.428102174 3717140.879501514 4205084.7054277705 4735962.039263428 4744979.424342666 5535726.910022164 5736621.947417791 4618714.700549657 1.3277082544894263 0.8739933530995566 0.894862682817431 0.8047998459526304 0.9104447834648323 1.0253852741109595 1.0273376322157293 1.198542726478294 1.2420386015042444 1.0 22.139060002539864 2.0499228640058558 2.1425132150654136 1.1647551446202682 0.950415684625764 0.20803011116091707 0.14637382859528858 0.4154850126811158 3.6257517039681124 0.0785280593760804 0.043643594205152736 112.18191878433942 -2.0499228640058558 -0.2143394599945042 CLGIPNTAHFANVTQIEDAVSLWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 CLGIPNTAHFANVTQIEDAVSLWAK 25 0 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 222.72 1.0067999999999998e-33 20205000.0 19675.0 18291.0 18372.0 14873.0 17602.0 21252.0 22348.0 21089.0 22840.0 22189.0 False True 19569.07198609799 18899.804877857005 20958.617907713324 16755.920275036962 19843.510364772155 19782.899261826904 21266.941862349508 22662.76826777213 17211.388040319984 20772.879023041358 0.9420490999053093 0.9098307873883668 1.0089414127173197 0.8066248427312955 0.9552604789524676 0.9523426791194247 1.023784032957595 1.0909786863262672 0.8285509207091153 1.0 14.342413560316492 2.518011073360748 2.7939805100320365 1.003990773811152 0.922019261965249 0.0994085181209069 0.07841461303316104 0.46781618989266105 7.319168594801847 0.02837751443092276 0.02487273425745057 329.6181164605715 -2.518011073360748 -0.08197151184590301 CLHMFLQDEIIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 CLHMFLQDEIIDK 13 0 O60493-4;O60493;O60493-2 O60493-4 SNX3 Sorting nexin-3 0 103.4 0.0016132999999999998 359820000.0 365170.0 347720.0 303500.0 309710.0 286640.0 396510.0 368280.0 320750.0 456540.0 347490.0 False True 363203.9652942013 359293.6499988212 346230.1619307092 348919.2542447183 323141.90495161305 369100.19698414183 350464.8894337784 344685.9937354977 344031.83432257816 325312.89069884317 1.116475785862527 1.1044556187951236 1.0642989313670637 1.0725651033845094 0.9933264687342503 1.1346005877333478 1.0773163297676378 1.0595522144696967 1.0575413522148558 1.0 18.311468465518054 1.1629629502758094 0.00944436531791475 2.169500789431163e-07 2.1066209779725997 0.3255649622432759 0.035434164417914034 1800.4644176138574 13.55204618626492 1523.3152135762057 1497.5080108418674 14.553349204563572 -1.1629629502758094 2.106620761022521 CLHNNNFENALCR ddPTM_BT-474_Trastuzumab_2h_R1 1 CLHNNNFENALCR 13 0 F8WEL9;Q49B96 F8WEL9 COX19 Cytochrome c oxidase assembly protein COX19 0 195.77 1.4718e-07 207700000.0 70482.0 74317.0 89905.0 81306.0 70499.0 110740.0 83577.0 59786.0 86742.0 80055.0 False True 70102.53274328644 76790.59641942482 102562.84253173122 91599.3312635081 79476.62976968945 103084.8044539201 79534.06121485513 64247.53490715658 65365.59638325024 74945.82136146633 0.9353761353175312 1.0246147820444995 1.3684931416932111 1.2222073172261507 1.0604544499735464 1.375457665034298 1.0612207561414206 0.8572530628130481 0.8721713258433672 1.0 16.193560421843358 1.9450875251991433 5.243223313551632 0.9048893789346962 1.1693736100411636 0.41050736232340734 0.13618637995622596 0.20448473642885254 11.996822066319359 0.06199237131607086 0.03778304478506455 88.12264523979287 -1.9450875251991433 0.26448423110646735 CLKDEDPYVR ddPTM_BT-474_Trastuzumab_2h_R1 4 CLKDEDPYVR 10 1 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;K7ERB2;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ;;; 117.23 0.00089818 5949180000.0 15885420.0 14377270.0 13754230.0 13573410.0 14165060.0 17775100.0 17859100.0 16128190.0 20766200.0 17442090.0 False True 15799894.663756099 14855808.740706762 15690706.030089688 15291802.314286914 15968896.428111542 16546349.175084658 16995187.104612734 17331757.435089376 15648648.262823697 16328920.883275466 0.9676018872709947 0.9097850891005599 0.9609150624375028 0.9364857863907714 0.9779517300783378 1.0133155334246178 1.0408028323549339 1.0614147474277398 0.9583394012798162 1.0 23.960926115993654 2.90392204567468 2.248240525626865 1.0253610946223382 0.9422372060353654 0.5471570237150908 0.029776486863882505 0.2027285498048332 2.0248275584417708 0.010012010473957868 0.011030842928702256 801.534177921149 -2.90392204567468 -0.08312388858697273 CLLADLPLPPELPGGDDLS(ph)KSPEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 CLLADLPLPPELPGGDDLSKSPEEK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 CLLADLPLPPELPGGDDLS(0.566)KS(0.434)PEEK;CLLADLPLPPELPGGDDLS(0.739)KS(0.261)PEEK;CLLADLPLPPELPGGDDLS(0.575)KS(0.425)PEEK 139.93 2.4432e-07 694721000.0 746610.0 448923.0 394101.0 393262.0 375970.0 633650.0 598680.0 597970.0 1036110.0 568172.0 True False 742590.3347161694 463865.13067531557 449586.9952126998 443048.92887793895 423847.5509512203 589847.2669516567 569719.5612203062 642593.5578301352 780774.5736626947 531910.7765234776 1.3960806351201887 0.8720731956346092 0.8452300931956317 0.832938433347164 0.7968395634347755 1.1089214450717597 1.0710810654071412 1.2080852394645407 1.4678675599802078 1.0 19.02082474072242 2.1113190594511133 1.6821841917727052 1.2439475110104452 0.9392818275755278 0.24778186936070778 0.19578908108042606 0.4680359126863171 2.537660872717574 0.11364013317014822 0.06198030062210687 129.2168231286956 -2.1113190594511133 -0.3046656834349174 CLLADLPLPPELPGGDDLSKS(ph)PEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 CLLADLPLPPELPGGDDLSKSPEEK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 CLLADLPLPPELPGGDDLS(0.294)KS(0.706)PEEK 162.58 1.1624e-11 300900000.0 566900.0 349030.0 277860.0 261120.0 263530.0 454110.0 409680.0 408000.0 838340.0 430950.0 True False 563847.8733885104 360647.25255690946 316980.2727975848 294177.7652267634 297088.9834353147 422718.44455995725 389862.21327041945 438447.0317820206 631742.3401804661 403446.40204514295 1.397578143045181 0.8939161453137843 0.7856812483411783 0.7291619499777987 0.73637782349605 1.04776853236792 0.9663296321249544 1.0867541005681376 1.5658643551610565 1.0 18.62201749827493 1.536515772614605 3.634448232871931 1.2954438472455607 0.9190807686105898 0.26697204327154467 0.22405880854068772 0.22857004112370763 6.667463206081592 0.14504524439868371 0.05802246059555936 34.39662032451965 -1.536515772614605 -0.37636307863497087 CLQDNNWDYTR ddPTM_BT-474_Trastuzumab_2h_R1 2 CLQDNNWDYTR 11 0 Q9UBU9;H0YDU0 Q9UBU9 NXF1 Nuclear RNA export factor 1 0 ; 201.75 9.8603e-08 281940000.0 182291.0 202546.0 202652.0 202411.0 185177.0 203512.0 209754.0 199256.0 248890.0 230923.0 False True 181309.5655104339 209287.62116835764 231183.64011723915 228036.21184633285 208758.19331993017 189443.6944557178 199607.39768190676 214125.49452146626 187554.39445513312 216185.2964368732 0.8386766745877042 0.9680936891536945 1.0693772607460632 1.0548183230070882 0.9656447351445486 0.8763024015883336 0.9233162521771815 0.9904720536069925 0.8675631393363499 1.0 17.721908877810165 2.995813318774889 24.95819494577516 0.9338031573275128 0.9906769900406118 0.10304831713734897 0.07022775978172299 394.3048372189244 2350602.629323816 0.021305217146567173 0.024897873885823436 990.4061278948767 -2.995813318774889 0.05687383271309898 CLS(ph)PGGHPTYRPAYLLENEEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 CLSPGGHPTYRPAYLLENEEEER 23 1 Q8NFF5-2;Q8NFF5;Q5T190 Q8NFF5-2 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region 1 CLS(1)PGGHPTYRPAYLLENEEEER;CLS(1)PGGHPTYRPAYLLENEEEER;CLS(1)PGGHPTYRPAYLLENEEEER 235.63 2.5584e-37 379111000.0 118721.0 151167.0 129832.0 157222.0 146990.0 178427.0 173736.0 150757.0 191183.0 191360.0 True False 118081.81932714322 156198.5022126188 148111.21708002596 177126.28907966532 165708.305222012 166092.76146197962 165331.72594402873 162007.25286853468 144068.51137094983 179147.24096846164 0.6591327819998701 0.8719001273378086 0.8267568971720894 0.9887190454183321 0.924983853093135 0.9271298880411994 0.9228817873513045 0.9043245767712135 0.8041905116267611 1.0 17.45078629933199 5.353011978358747 1.1676043121909305 0.9163754131158767 3.4478608466884304e-18 0.6485936101805154 0.056310840179749556 3.3974082805237065 1.408039571272186 0.015271439033088571 5.380821514967878 225430.13876105318 -5.353011978358747 -0.9163754131158767 CLSSLKDER ddPTM_BT-474_Trastuzumab_2h_R1 4 CLSSLKDER 9 1 P52209-2;P52209;K7ELN9 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 139.43 0.00010168 3716630000.0 10853400.0 10325200.0 10659100.0 9787800.0 8755300.0 11505500.0 12402000.0 10689400.0 16868200.0 11530400.0 False True 10794966.500326097 10668868.040284796 12159808.629441934 11026934.476434268 9870235.558271186 10710151.866033768 11802067.879759204 11487097.30767335 12711258.132299723 10794520.00032791 1.0000413635806107 0.9883596528572557 1.1264797905856445 1.0215307837772591 0.9143746602879381 0.9921841699036569 1.0933388311291923 1.0641600837577216 1.1775658511831548 1.0 23.363795756711106 2.23444473609349 24.961089546753318 1.0865902934348457 1.0081661858204913 0.25983729319053017 0.06325377451686134 148.1383674617773 898385.8829005159 0.023768202769667793 0.018193123214523356 171.57133719649298 -2.23444473609349 -0.07842410761435437 CLTTDEYDGHSTYPSHQYQ ddPTM_BT-474_Trastuzumab_2h_R1 5 CLTTDEYDGHSTYPSHQYQ 19 0 P30043;M0R192;A0A2R8YEP4 P30043 BLVRB Flavin reductase (NADPH) 0 ;;;; 192.16 8.0692e-15 10062720000.0 2844320.0 3450560.0 3601460.0 3713730.0 3425780.0 3690110.0 3459270.0 2826800.0 3395980.0 3907250.0 False True 2829006.4971536635 3565409.803692435 4108514.2635485088 4183887.837222689 3862032.7768111075 3435021.3812845913 3291931.894405306 3037750.1701995474 2559086.2328006057 3657885.9598349785 0.7733993154016455 0.9747186880187169 1.123193644816051 1.1437994194360943 1.0558100551022478 0.9390728467214321 0.8999547636399845 0.8304660679844137 0.6996079869357261 1.0 21.802578666897087 2.2608989872325447 1.9982143385935014 0.830962381504559 1.0232751696812075 0.27901368553709616 0.11774714803937139 0.3960124299271802 3.2068384354642596 0.05806223618620866 0.03885386560964917 182.3471530850923 -2.2608989872325447 0.19231278817664843 CMALAQLLVEQNFPAIAIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 CMALAQLLVEQNFPAIAIHR 20 0 O00148 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 183.74 4.2618e-17 412960000.0 209970.0 192040.0 184040.0 215270.0 224710.0 228500.0 191680.0 216940.0 229930.0 207260.0 False True 208839.5448498601 198431.9353093687 209951.23229564345 242523.15992786968 253325.4865394816 212704.3328311427 182407.7061112918 233129.16439899895 173266.83240414943 194032.4893557865 1.0763122482386067 1.0226737592667545 1.0820416363914585 1.2499100575016 1.3055828298681096 1.0962305000433132 0.9400884703222099 1.2014955081647336 0.8929784541723822 1.0 17.565938716065943 2.4752867764369735 24.998518043253352 1.0383618204904097 1.1483000200812692 0.24775264168973365 0.10922227609335806 111.47894067634653 1519084.8494195 0.040006160201105666 0.03368667893956232 298.7354599115155 -2.4752867764369735 0.10993819959085949 CMIDQAHQEERPIR ddPTM_BT-474_Trastuzumab_2h_R1 5 CMIDQAHQEERPIR 14 1 Q9UBQ5;A0A087WVB9;K7ERF1;Q9UBQ5-2;K7ES31;K7EQM4 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K 0 ;;;; 237.46 1.621e-17 2849960000.0 1129546.0 1287780.0 1234230.0 1322630.0 1280810.0 1276400.0 1226754.0 1202831.0 1283400.0 1355090.0 False True 1123464.649840359 1330642.978820551 1407998.8558805268 1490074.8223876911 1443913.5615443583 1188165.4723224107 1167411.222364627 1292592.3570720581 967123.2666789254 1268606.9960490824 0.8855891961334353 1.0489008676167417 1.1098778898946349 1.1745755990849354 1.138188237997462 0.9365906667886928 0.9202307933035078 1.0189068490853945 0.7623505701063527 1.0 20.274813772730475 2.7215475820634314 23.415445709083006 0.935658299334769 1.0780416463058682 0.3544433131798972 0.09653067901366677 423.2943315910274 582588.6404472267 0.03188909850174805 0.0301563699510187 526.6809158157353 -2.7215475820634314 0.14238334697109922 CNAEEHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 CNAEEHVR 8 0 P11279-2;P11279 P11279-2 LAMP1 Lysosome-associated membrane glycoprotein 1 0 ; 164.68 0.00032867 817470000.0 703400.0 741420.0 778350.0 812290.0 893810.0 1192220.0 812820.0 744220.0 917530.0 719430.0 False True 699612.9725550876 766097.7165021456 887934.9144605187 915125.8307140295 1007631.40547307 1109804.6375840048 773500.7913260665 799757.4754725876 691417.0257721008 673515.3614649893 1.03874835316797 1.1374613859374743 1.318358815943169 1.3587304508148172 1.4960778374547123 1.64777925060243 1.148453080036059 1.1874376164680258 1.0265794447036412 1.0 19.36135132533096 1.5960223588503981 1.9142577515622334 1.0211432180422841 1.327927175741618 0.33510094462143525 0.16656047587010014 0.39400040951295184 3.0014169437605416 0.14444620375845973 0.051739474652277156 39.447761050471435 -1.5960223588503981 0.30678395769933386 CNDS(ph)LRHSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 CNDSLRHSPK 10 1 A6NHR9;A0A2R8YCU7;J3KTK7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 1 CNDS(0.587)LRHS(0.413)PK 68.809 0.035648 148670000.0 55673.0 47211.0 51079.0 50039.0 51393.0 66330.0 69840.0 65817.0 85371.0 63361.0 True False 55373.26275385176 48782.38959534782 58270.47921337299 56373.93226938573 57937.59391982363 61744.763224024966 66461.57238529116 70728.59875195411 64332.46096279149 59317.24673391873 0.9335103330443063 0.8223980761307508 0.9823530662972061 0.9503801233773389 0.9767411184763202 1.040924294767008 1.1204426375927385 1.1923783156899317 1.084549005643665 1.0 15.856164014841905 2.795395904947924 1.2606267718943682 1.1249452960097333 0.9097689054013507 0.6322262158981431 0.06020067357142623 0.24654867256348473 0.8090711536797428 0.02708758869248063 0.02688717122716684 624.3036944197983 -2.795395904947924 -0.21517639060838256 CNDSLRHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 CNDSLRHSPK 10 1 A6NHR9;A0A2R8YCU7;J3KTK7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 1 CNDS(0.106)LRHS(0.894)PK 87.18 0.007904600000000001 41604000.0 44226.0 37227.0 38329.0 37684.0 39755.0 50700.0 53583.0 49632.0 69229.0 45681.0 True False 43987.89212997052 38466.07819080329 43725.390038359656 42454.790536172455 44817.563603653936 47195.22833496254 50990.98558306214 53335.79186618932 52168.44057107326 42765.59947052827 1.0285812118753201 0.8994630887218598 1.0224430518854954 0.9927322675654293 1.047981652508806 1.103579253401719 1.192336509118792 1.2471657717073614 1.2198692691546371 1.0 15.384163142792039 2.710308642272457 1.5506533414179693 1.1925831689008817 0.9805966972392919 0.5385681712659744 0.07254849596419345 0.2424772869831864 1.1720501666044605 0.028662482505360146 0.026999045171895334 513.2259913478147 -2.710308642272457 -0.2119864716615898 CNEIINWLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 CNEIINWLDK 10 0 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;; 130.23 0.0006563 1244895000.0 1797673.0 1504054.0 1332315.0 1077968.0 1267326.0 1719410.0 1587366.0 1621970.0 2027380.0 1643563.0 False True 1787994.5283082486 1554115.5281701558 1519893.3713104234 1214438.6382734522 1428712.4540702878 1600551.2337557797 1510579.0422530083 1743009.6375967744 1527759.3645001703 1538669.4022149222 1.1620394385788277 1.010038625537753 0.9877972286460817 0.7892784743267538 0.9285376390884547 1.0402177566225586 0.9817437326553204 1.1328032097653358 0.9929094335020591 1.0 20.55325185750738 2.355032358688384 2.2853620997609463 1.0499348341361403 0.970237737237491 0.04469611535066109 0.09556032880946755 0.7110789807904111 7.617325772128043 0.042465843245727816 0.03216217308005254 226.48130494320694 -2.355032358688384 -0.07969709689864934 CNEIINWLDKNQTAEKEEFEHQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 CNEIINWLDKNQTAEKEEFEHQQK 24 2 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 213.2 6.526799999999999e-26 7056000000.0 2258050.0 1495050.0 1370650.0 1264230.0 1365660.0 2067140.0 2166270.0 1958240.0 3241300.0 1895770.0 False True 2245892.909692939 1544811.8354731896 1563625.6060966302 1424281.3883755794 1539568.7060990073 1924243.4773241496 2061479.24414497 2104373.8125412376 2442525.0461947992 1774780.3355496484 1.2654483851926313 0.8704242460488849 0.8810248653179811 0.8025113642779236 0.8674700047441104 1.0842150089116311 1.1615405032682713 1.1857094483129453 1.376240764713201 1.0 20.759209042716556 2.4775247671795477 2.8326517384858763 1.194913975675858 0.9238525018917948 0.38008525631775736 0.14576442324243882 0.25910440390688805 4.240649064539585 0.05346860514642887 0.04569929617014678 300.278866062695 -2.4775247671795477 -0.2710614737840632 CNEWGK ddPTM_BT-474_Trastuzumab_2h_R1 1 CNEWGK 6 0 P52743 P52743 ZNF137P Putative zinc finger protein 137 0 79.027 0.06823 181250000.0 173730.0 452990.0 374260.0 402310.0 340400.0 241440.0 279020.0 208340.0 171020.0 322670.0 False True 172794.6569832176 468067.49831176293 426952.5548737638 453242.4047502259 383747.9222911286 224749.8210886265 265522.7366400908 223887.38872908385 128874.41255059197 302076.92434831423 0.5720220349700534 1.5494976960638371 1.413390168066793 1.500420483054204 1.2703649016521448 0.744015192731092 0.8789904664612048 0.7411601836588061 0.42662779630923225 1.0 18.204556455259453 2.749303630602579 6.295606130472607 0.751380849539726 1.300666428458613 0.42957425950352157 0.28804402142819846 0.13978336449719458 26.398551271130543 0.08819314310523385 0.08970875861593566 561.4403616264285 -2.749303630602579 0.549285578918887 CNTDDTIGDLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 CNTDDTIGDLKK 12 1 Q9BZL1 Q9BZL1 UBL5 Ubiquitin-like protein 5 0 101.3 0.0044034 236810000.0 278160.0 227450.0 210180.0 159140.0 193440.0 260730.0 255690.0 248410.0 343030.0 251260.0 False True 276662.4174664812 235020.5357535717 239771.51708269012 179287.10768300822 218073.43739129236 242706.348792402 243321.2978693457 266947.6156004213 258494.85286650425 235224.37168549155 1.1761639131356452 0.9991334404234592 1.0193310980686914 0.7621961380886388 0.9270869163288447 1.0318078311924 1.0344221397036197 1.1348637630004834 1.098928869548121 1.0 17.843678020530376 2.278391550281761 2.387618782649086 1.0886179021558013 0.9703645249180405 0.13888434776929104 0.10168027616455239 0.49291519765706 5.761865039020438 0.04617135860883117 0.0331376491561559 189.84167203357953 -2.278391550281761 -0.11825337723776086 CNTDQAGRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 CNTDQAGRPK 10 1 P33992;B1AHB1;B1AHB2 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 ; 103.43 0.0025674 132885000.0 283540.0 223750.0 222830.0 216860.0 228840.0 309000.0 306130.0 280090.0 348430.0 303510.0 False True 282013.45214425575 231197.38349026864 254202.52712691922 244314.45376484314 257981.4175590532 287639.5573077603 291321.32236983394 300991.73806820175 262564.0952227977 284139.73195201595 0.9925167811162738 0.8136749545794323 0.8946391459602264 0.8598391083373785 0.9079385546918858 1.0123172684499306 1.0252748546233963 1.0593088689160575 0.9240668083235124 1.0 18.116241055637893 2.7880217346369176 3.8829149240842527 1.0145753103816348 0.8850802873472382 0.5178939386384553 0.05288609265615481 0.15989326304986515 5.062650251046867 0.01619288539401649 0.01681149634843729 613.7927221752576 -2.7880217346369176 -0.12949502303439664 CNVWILDGDLYHK ddPTM_BT-474_Trastuzumab_2h_R1 1 CNVWILDGDLYHK 13 0 O43237;B4E2E0;Q9Y6G9;C9JGM7;C9JLW1 O43237;Q9Y6G9 DYNC1LI2;DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 2;Cytoplasmic dynein 1 light intermediate chain 1 0 103.3 0.0016216999999999998 684940000.0 386070.0 402330.0 402910.0 383770.0 450900.0 479670.0 505350.0 419170.0 720930.0 489970.0 False True 383991.4420164093 415721.310836379 459636.22584349924 432355.24265117507 508319.442306316 446511.54192172555 480904.28987552895 450450.59390213114 543266.4614670703 458699.69511557894 0.8371303624251476 0.9063038743281252 1.0020417077619472 0.9425671027364301 1.1081747987171309 0.9734289049597421 1.048407694612387 0.9820163359572993 1.1843619414880644 1.0 18.807190422939335 5.904486417173019 0.5238945896731675 1.0457938665027087 0.19812748731154448 0.5256972707120766 0.06447603770912966 9.94018590805291 0.8166731488192233 0.0312513989523184 6.739046690253095 802576.4594078035 -5.904486417173019 -0.8476663791911642 CPAGQQPPQHR ddPTM_BT-474_Trastuzumab_2h_R1 4 CPAGQQPPQHR 11 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 ;;; 96.89 0.0066753 327502000.0 249897.0 253085.0 273204.0 294575.0 309775.0 307953.0 298261.0 270922.0 322167.0 288222.0 False True 248551.58231816685 261508.7812318869 311668.74846826185 331868.1647965444 349223.0100697244 286664.9339533874 283832.9759623333 291139.5753540409 242773.25966662704 269827.4252007311 0.9211501838008622 0.9691705023584769 1.1550669774816404 1.229927478830811 1.2942457936213454 1.062401028139117 1.0519055865102784 1.07898437357676 0.8997353011319076 1.0 18.04167746538523 -1.1034492529260715 6.833545922056214 0.9999999385757148 1.0826081325136752 0.02774072283564355 0.12061804020751368 1.1987183105875454e-07 1.5592612449932203e-08 0.12328679776585438 0.029058955259739252 0.07880445086437328 1.1034492529260715 0.08260819393796037 CPEALFQPSFLGMESCGIHETTFNSIMK ddPTM_BT-474_Trastuzumab_2h_R1 9 CPEALFQPSFLGMESCGIHETTFNSIMK 28 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;;;;; 342.85 1.1156999999999993e-96 15712014000.0 3692669.0 4299022.0 4993103.0 4746144.0 4902657.0 5754337.0 5609622.0 5089886.0 5663387.0 5828617.0 False True 3672788.0803980953 4442112.348456319 5696088.50157071 5347005.343766896 5526981.308625311 5356553.227442277 5338263.153022943 5469719.139237406 4267721.159347798 5456629.672929925 0.6730872902404609 0.8140761999102529 1.0438840168737726 0.9799098828885402 1.0128928734241205 0.9816596596276045 0.9783077601006731 1.0023988188849275 0.7821166938485409 1.0 22.37957870444818 4.460598122518163 3.6966128850982267 0.9759892805188918 0.6911693063338221 0.6668965535771739 0.06796856068901944 0.11658616540715468 3.3483945706296256 0.016193350508704005 0.0625286877686149 28880.06208458066 -4.460598122518163 -0.28481997418506966 CPHPLTFDVNNPLHLDYVMAAANLFAQTYGLTGSQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 CPHPLTFDVNNPLHLDYVMAAANLFAQTYGLTGSQDR 37 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 309.09 7.495499999999994e-110 2179570000.0 641878.0 700126.0 664571.0 682332.0 770123.0 776202.0 827454.0 686353.0 895849.0 794956.0 False True 638422.2001673504 723429.2706748962 758136.8202453161 768715.1612389237 868193.5991733571 722544.98272297 787426.8888387559 737572.1460899147 675079.0177115859 744221.2274839265 0.8578392776106871 0.9720621287848453 1.0186981938266337 1.032912167579265 1.1665799994828934 0.9708739230211965 1.0580548629349096 0.9910657192398408 0.9070945476708618 1.0 19.50537201559793 4.704054297768304 2.109026034579473 1.022527386610583 0.8198368716878023 0.3711237361494274 0.06296389982881724 0.6614278349349236 3.479672169349963 0.016161308831709673 0.24782667428915908 50588.79068022874 -4.704054297768304 -0.20269051492278078 CPHVTEHIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 CPHVTEHIPR 10 0 P48449-2;P48449;A0A0G2JQD0;P48449-3 P48449-2 LSS Lanosterol synthase 0 ; 104.22 0.0015674 216908000.0 118708.0 179712.0 163820.0 166924.0 185563.0 186917.0 170894.0 120361.0 170486.0 152471.0 False True 118068.88931769872 185693.60528180192 186884.4320510338 188056.56128489657 209193.34813192894 173995.86774528967 162627.20434152294 129342.94900077394 128472.00969535884 142740.17024300946 0.827159510295463 1.300920441426306 1.3092630598161015 1.3174746882026114 1.4655534442461824 1.2189691762947223 1.1393233177784263 0.9061426000863857 0.9000410289313818 1.0 17.123031872704797 1.9333527854936479 2.653984094383625 0.9253820981283817 1.259065295458379 0.4256224868625297 0.15678715832849174 0.2528044118851243 3.240458083729754 0.08512445085827525 0.045224732760792696 85.77343158687147 -1.9333527854936479 0.3336831973299973 CPLLKPWALTFSYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 CPLLKPWALTFSYGR 15 1 P04075;J3KPS3;P04075-2;H3BQN4;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 ; 183.6 4.5493e-07 1859850000.0 700900.0 822360.0 746370.0 700960.0 671850.0 936670.0 1011320.0 848700.0 1189910.0 906070.0 False True 697126.4322773099 849731.7554728827 851452.4084356631 789701.464128952 757406.115133062 871920.2075840118 962398.5879824265 912034.3036112768 896672.6244771079 848243.8368744461 0.8218467402557691 1.0017541166039226 1.0037826052153114 0.9309840281761348 0.8929108379070609 1.027912222500557 1.1345777548217861 1.0752029828732756 1.0570930026218746 1.0 19.69411951715323 2.53824914564149 5.224858351323118 1.0763332698269312 0.9392122471909118 0.5530242436721581 0.05809254533713415 0.15721694416613835 8.763100329447163 0.019086391901519263 0.017642093325177327 345.3417978705109 -2.53824914564149 -0.13712102263601944 CPNLTHLNLSGNK ddPTM_BT-474_Trastuzumab_2h_R1 2 CPNLTHLNLSGNK 13 0 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ; 190.27 4.5543e-06 2044960000.0 2676100.0 2347000.0 2578700.0 2291390.0 2123160.0 2850500.0 2876600.0 2561900.0 3914100.0 2792400.0 False True 2661692.174942659 2425118.476208538 2941758.5455377926 2581479.7390584904 2393531.841044746 2653451.644355245 2737447.868320861 2753081.987064605 2949522.501252908 2614186.641306084 1.018172204266502 0.9276761031098051 1.1253054770672568 0.9874886889364362 0.9155933257500329 1.0150199692817432 1.0471508900960467 1.0531313807376534 1.1282754087440694 1.0 21.317930716147753 2.223124284639262 3.0884479001907743 1.062712081354644 0.9955463145226868 0.18965185812811403 0.06073838854733106 0.4143355602354771 8.19056638406916 0.0247235003956838 0.018000700000191088 167.15689087024955 -2.223124284639262 -0.06716576683195719 CPNPTCENMNFSWR ddPTM_BT-474_Trastuzumab_2h_R1 1 CPNPTCENMNFSWR 14 0 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 105.19 0.0023591 219180000.0 17678.0 16199.0 18826.0 16672.0 16289.0 19583.0 19066.0 18682.0 22603.0 22415.0 False True 17582.823612210446 16738.17392249772 21476.537161474567 18782.67349058132 18363.307597532872 18229.2733034235 18143.704740807018 20076.14570527381 17032.793514682697 20984.45550955302 0.8378975382137503 0.7976463299168182 1.0234498174945512 0.8950755706780501 0.8750909733718424 0.8687036599603338 0.8646259481237065 0.9567151121044953 0.8116862268324591 1.0 14.357033409184574 -1.9183262942150456 2.3735279443166153 1.0721334773447788 0.8872601821028427 0.2334643736554025 0.06373081365026492 16264653.164976692 8101520.943558892 6522521.168528154 0.015146953898710933 0.01206906720989316 1.9183262942150456 -0.18487329524193608 CPPDYPIHPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 CPPDYPIHPPR 11 0 Q9H832-2;Q9H832;I3L4C5;H0Y9X8 Q9H832-2 UBE2Z Ubiquitin-conjugating enzyme E2 Z 0 ;;; 103.34 0.0027472 3424810000.0 1310690.0 1513280.0 1427220.0 1420560.0 1382730.0 1550800.0 1561250.0 1339150.0 1561580.0 1470660.0 False True 1303633.3906713473 1563648.6100029217 1628160.1703813737 1600402.750346701 1558812.469417193 1443596.8461905306 1485726.3729458174 1439084.1730659148 1176749.533099951 1376801.2197046299 0.94685665004787 1.1357112324017093 1.182567350376599 1.162406546015438 1.1321986406662325 1.048515083753507 1.079114654811648 1.0452374333127383 0.8546982064356416 1.0 20.39288884989529 1.4648881796141469 3.438551029781906 0.928313660859054 1.1037797529116948 0.4621965215085616 0.07174256656148013 0.18746182966996375 4.271820163366642 0.0522855984494584 0.01877203078504825 29.166759433942598 -1.4648881796141469 0.17546609205264085 CPPGVVPACHNSK ddPTM_BT-474_Trastuzumab_2h_R1 3 CPPGVVPACHNSK 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 172.76 2.2843e-05 1511410000.0 1309730.0 1791610.0 2138360.0 2253910.0 2293460.0 2618160.0 2600590.0 2369060.0 2327640.0 2579560.0 False True 1302678.5592046832 1851242.6557988832 2439422.5010416885 2539254.774901403 2585518.536597562 2437172.76168571 2474789.5264814524 2545851.2870429247 1754024.3107780388 2414930.2723275768 0.5394269864152746 0.7665822392522349 1.0101420024398906 1.0514816117046721 1.0706390019723293 1.009210406450657 1.0247871563166011 1.0542131655789642 0.7263250334294172 1.0 21.203550103221875 4.493102494574519 2.390020941779382 1.0059746882235727 0.5274133817535621 0.7008194684733389 0.09427348054376533 0.18208346029662592 1.756186038094455 0.023446106595331175 0.14384727669688332 31124.50796540477 -4.493102494574519 -0.4785613064700106 CPQDQS(ph)PDRVGTEMEQVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 CPQDQSPDRVGTEMEQVSK 19 1 Q9H116 Q9H116 GZF1 GDNF-inducible zinc finger protein 1 1 CPQDQS(0.951)PDRVGT(0.049)EMEQVSK;CPQDQS(1)PDRVGTEMEQVSK 133.27 7.281699999999998e-06 848000000.0 822100.0 827510.0 786080.0 754580.0 790570.0 987400.0 901980.0 902820.0 1196040.0 955360.0 True False 817673.9049438958 855053.1701096415 896753.231270154 850109.7506311699 891244.4034244918 919143.3620895854 858347.7815017886 970193.0128270685 901291.9681148999 894388.1068751545 0.9142271667729509 0.956020281952381 1.0026444050148016 0.950493129432718 0.9964850790987747 1.0276784262046168 0.9597039304343112 1.0847561649905697 1.0077190888236052 1.0 19.77054147850978 6.2177456683616334 0.3389536117029458 1.030003890507989 0.6437782229699512 0.4471047702977671 0.03357532470720745 15.263685600587173 0.6400904994292796 0.030224397296267042 2.94946473708989 1650994.6591813609 -6.2177456683616334 -0.38622566753803766 CPQIVIAFYEER ddPTM_BT-474_Trastuzumab_2h_R1 4 CPQIVIAFYEER 12 0 Q13185;P45973 Q13185;P45973 CBX3;CBX5 Chromobox protein homolog 3;Chromobox protein homolog 5 0 ;;; 165.63 0.00012582 1102750000.0 647250.0 767210.0 731920.0 726470.0 772810.0 753980.0 814760.0 727040.0 901210.0 789810.0 False True 643765.2779162347 792746.1210617616 834967.9740373143 818441.0275133522 871222.7726962588 701859.1372780089 775346.9461145453 781295.4166343139 679118.8710953055 739403.6496096393 0.8706547205387802 1.0721425590478002 1.12924513488421 1.106893410582217 1.1782776202906384 0.9492232526151965 1.0486111970422136 1.0566561539786703 0.9184683784747878 1.0 19.49600263895295 2.7129550833493297 24.98630794010701 1.0074130157929806 1.0766623345858524 0.16102310522754337 0.08481653050023447 1608.6126299807136 1569710.0581772989 0.028043427325346905 0.026447554775043444 516.3629619754867 -2.7129550833493297 0.06924931879287177 CPQVVISFYEER ddPTM_BT-474_Trastuzumab_2h_R1 2 CPQVVISFYEER 12 0 P83916;J3KS05 P83916 CBX1 Chromobox protein homolog 1 0 ; 132.17 0.00043201 184739000.0 152033.0 157895.0 135023.0 142819.0 149740.0 153147.0 141925.0 142111.0 224440.0 154503.0 False True 151214.47122045414 163150.4396254571 154033.064759045 160899.8707564382 168808.50142148518 142560.3083592604 135059.54554384967 152716.04444503604 169129.76934191835 144642.48626332666 1.0454360618854612 1.1279565488693002 1.0649226844636952 1.112397020495862 1.1670741134396947 0.9856046590607163 0.933747400455832 1.0558173354889047 1.1692952306835471 1.0 17.14213185603695 2.727776243658577 24.959958695936653 1.0263087969577627 1.1032575317577669 0.24954114458659737 0.06466179828798058 1057.815105020191 2448263.717403485 0.021613277348362617 0.020566886842145964 534.2890131459446 -2.727776243658577 0.07694873480000419 CPS(ph)LDNLAVPESPGVGGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 CPSLDNLAVPESPGVGGGK 19 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 CPS(1)LDNLAVPESPGVGGGK 124.2 2.1049e-05 0.0 109150.0 98018.0 94018.0 100920.0 100750.0 106190.0 116970.0 115770.0 126530.0 116130.0 True False 108562.34852770499 101280.46987686775 107254.91718089434 113696.46165243917 113579.91530796455 98849.33524437217 111311.71423120731 124409.34526814838 95348.37691513513 108718.48397610502 0.9985638555405689 0.931584641109675 0.9865380132091213 1.045787776781621 1.044715775589071 0.9092228996322099 1.0238527080240767 1.144325607920471 0.8770208471274445 1.0 16.730237718147354 3.9934480412015554 21.859535532436436 1.0184869552856874 0.9635709899448112 0.032433713066425285 0.071998702744935 143.67357158186175 479383.125614135 0.018577175074483553 0.03777798096824839 9850.267875878204 -3.9934480412015554 -0.05491596534087628 CPS(ph)QSSSRPAAMISQPPTPPTGQPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 CPSQSSSRPAAMISQPPTPPTGQPVR 26 1 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 CPS(0.973)QS(0.021)S(0.005)S(0.002)RPAAMISQPPTPPTGQPVR 219.22 1.9897e-34 683920000.0 76313.0 58357.0 47974.0 59801.0 59242.0 70951.0 56793.0 58495.0 73759.0 68573.0 True False 75902.13928717132 60299.37746744854 54728.322202516814 67371.80046846539 66786.11754515587 66046.32437068888 54045.705619671324 62860.19393159141 55582.082769963316 64196.61243170099 1.1823387000042078 0.9392922022419994 0.8525110614012924 1.0494603674008889 1.0403370990363372 1.0288132328003414 0.841877843276711 0.9791824140014959 0.8658102143488848 1.0 15.97020954984205 2.2699453050987946 24.99876311146803 0.9235360594543385 1.0072663277449119 0.20233593312042997 0.09027840633832754 357.4834155363785 284744.10145140934 0.03128021077383191 0.026168615563384803 186.185264080068 -2.2699453050987946 0.0837302682905734 CPS(ph)QSSSRPAAMISQPPTPPTGQPVREDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 CPSQSSSRPAAMISQPPTPPTGQPVREDAK 30 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 CPS(0.996)QS(0.002)S(0.002)S(0.001)RPAAMISQPPTPPTGQPVREDAK;CPS(0.996)QS(0.001)S(0.001)S(0.001)RPAAMISQPPTPPTGQPVREDAK 215.92 9.2961e-35 963840000.0 253040.0 185067.0 199596.0 223359.0 219714.0 281000.0 254140.0 250390.0 417670.0 245650.0 True False 251677.66075538693 191226.84321963612 227697.38188046718 251636.22649848572 247693.27555309312 261575.13140284974 241846.27729092064 269075.373254657 314740.8249912627 229972.4066884543 1.0943819929507324 0.8315208157937525 0.9901074009671555 1.094201822392456 1.0770565004724477 1.1374196372924337 1.0516317186633264 1.1700332971649763 1.3686025620353877 1.0 17.811101243772267 3.3116871084081385 0.895774415678907 1.161759859907171 0.9506890411703359 0.30209441540680027 0.10959979550564862 0.6989233051764411 1.2023217830475963 0.04940582386486476 0.09206745230532293 2049.6849317289903 -3.3116871084081385 -0.2110708187368351 CPSGVKPDLSYMPIWK ddPTM_BT-474_Trastuzumab_2h_R1 1 CPSGVKPDLSYMPIWK 16 1 P04626-5;P04626-4;P04626;B4DTR1;J3QLU9;P04626-6;F5H1T4;J3QRJ7 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 133.71 2.9372e-05 287250000.0 303720.0 327630.0 402310.0 265250.0 430940.0 571250.0 425640.0 313640.0 511220.0 431870.0 False True 302084.8052664642 338534.96649348276 458951.7510587925 298830.6228033046 485817.65461850393 531760.8320778578 405050.16709729866 337045.4094316494 385236.68099703995 404307.68685749144 0.7471656243155764 0.8373201338929973 1.1351546507216466 0.7391168471863239 1.2016038042574806 1.315237996613432 1.0018364237533504 0.8336359173661955 0.9528304643211655 1.0 18.62509410739532 4.411980189443105 6.141254772347228 1.0123209362183077 0.7681611621396597 0.25626121976803107 0.15926855464615572 0.26216099260493003 18.01339573220219 0.04158538885362005 0.1184310510799496 25821.42402249482 -4.411980189443105 -0.24415977407864797 CPSIAAAIAAVNALHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 CPSIAAAIAAVNALHGR 17 0 Q14498-2;Q14498;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 0 107.63 0.00069473 268830000.0 1026000.0 988350.0 730690.0 725880.0 722260.0 906720.0 863970.0 325010.0 1136200.0 732760.0 False True 1020476.1299993158 1021246.632279808 833564.800728665 817776.3335738468 814235.5298295834 844040.5805892951 822176.47041409 349263.89656733925 856198.7342999809 685994.6294526015 1.4875861795209946 1.4887093694811069 1.2151185518665342 1.1921031134404103 1.1869415515385497 1.2303894875427939 1.1985173573008239 0.5091350304681524 1.2481128824334908 1.0 19.387837756239524 3.4671442889093367 0.4746238636789328 0.8897574747776578 1.5870676881547374 0.4087912650839308 0.2006716164506185 1.4780013976936652 0.5745373081906201 0.17415156790083527 0.5147996390230594 2931.8671596471104 -3.4671442889093367 0.6973102133770797 CPSIILHDR ddPTM_BT-474_Trastuzumab_2h_R1 3 CPSIILHDR 9 0 Q9UHG3;Q9UHG3-2 Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 0 ;; 125.48 0.0005003999999999999 1116230000.0 641410.0 867800.0 921200.0 821630.0 922970.0 1050720.0 834500.0 805180.0 1071740.0 820750.0 False True 637956.7198273499 896684.1984038226 1050896.952786061 925648.273756378 1040504.7586282097 978086.1995288342 794132.0469004229 865266.6202211954 807624.0375802342 768369.0323205721 0.8302738566918029 1.1669967954014524 1.367698213464198 1.204692322074463 1.3541732095654 1.272938078432039 1.0335294806221476 1.1261081379190678 1.0510887394057347 1.0 19.55143984948159 2.232542387675945 24.988338372616653 1.068872425668386 1.2129035462091982 0.19420910226689658 0.1434181771164729 256.58201544151854 1065345.172384316 0.05456051707546472 0.04133638637357498 170.82144357550754 -2.232542387675945 0.14403112054081224 CPSSSGKPNHADILLINLQYVSEVEIINDRT(ph)ETPPPLASLNVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 CPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSK 44 2 K7ELG9;Q3MHD2 K7ELG9 LSM12 Protein LSM12 homolog 1 CPSSSGKPNHADILLINLQYVSEVEIINDRT(0.525)ET(0.462)PPPLAS(0.014)LNVSK 77.654 0.00069013 16188000.0 14711.0 14405.0 16241.0 12703.0 15618.0 19004.0 22104.0 18442.0 21401.0 20791.0 True False 14631.797610545753 14884.461716993623 18527.59163069736 14311.198497532072 17606.859724861464 17690.298210604116 21034.745074520022 19818.235686578493 16127.010308707888 19464.100579929367 0.7517325319225642 0.7647135636126905 0.9518853211127721 0.7352612281653143 0.9045812136327009 0.9088680022978135 1.0806944296316596 1.0181942702769577 0.8285515296472236 1.0 14.248528060024249 2.8139875247588044 2.095350247900957 0.9879715250306169 0.8099173542709147 0.45183359289586533 0.08494523692392407 0.2845619372389247 2.463242968923258 0.02995945297349689 0.031168921602879915 651.6096761057029 -2.8139875247588044 -0.1780541707597022 CPT(ph)PEIQKK ddPTM_BT-474_Trastuzumab_2h_R1 1 CPTPEIQKK 9 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 CPT(1)PEIQKK 95.273 0.0047797 465850000.0 753160.0 595600.0 593250.0 585560.0 545860.0 775720.0 802220.0 727490.0 1133900.0 741320.0 True False 749105.0702439419 615424.1859521966 676774.4433785619 659691.8359611813 615372.0354342988 722096.3022484638 763413.5538219973 781778.9979193679 854465.538481559 694008.3229240163 1.0793891737317938 0.8867677311984866 0.9751676183466444 0.9505532054453587 0.8866925872611948 1.040472107317253 1.100006337972376 1.1264691965444356 1.2312035897228144 1.0 19.40459343892508 2.397664892633877 2.786229466253839 1.126585015957355 0.9527989226764171 0.5074463552911599 0.0730891665776632 0.19418060244216975 3.0762476833898535 0.026500791107023684 0.02144601526957987 249.84168062914245 -2.397664892633877 -0.17378609328093786 CPVTVCGDVHGQFHDLMELFR ddPTM_BT-474_Trastuzumab_2h_R1 2 CPVTVCGDVHGQFHDLMELFR 21 0 P67775;P62714;P67775-2;E7ESG8 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 0 ; 209.67 1.4187e-22 460360000.0 185143.0 175115.0 186778.0 185937.0 166449.0 180398.0 173894.0 47998.0 192814.0 132791.0 False True 184146.21065932087 180943.59691574695 213074.7188965207 209476.60513544982 187645.2935294829 167927.5108712147 165482.08288040996 51579.854488905454 145297.57327523024 124316.1646919053 1.4812732609286436 1.4555114161073284 1.7139743606520288 1.6850311112364105 1.5094199052434345 1.3508099392174147 1.3311389012887165 0.4149086694939199 1.1687745808063135 1.0 16.923654375047644 1.938673488890349 5.99859301239876 0.8074922201338587 1.528641196493335 0.6792683856249211 0.20524768408950675 0.11626573298267873 8.479326611236253 0.08951895504138284 0.055050872330369864 86.83073733128718 -1.938673488890349 0.7211489763594764 CQEVISWLDANTLAEKDEFEHK ddPTM_BT-474_Trastuzumab_2h_R1 3 CQEVISWLDANTLAEKDEFEHK 22 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ;; 356.24 1.7478999999999993e-96 10708780000.0 8895750.0 5776750.0 5298620.0 4936500.0 4945490.0 7611880.0 6838950.0 7159260.0 11372000.0 6970110.0 False True 8847856.270410744 5969025.631630881 6044619.639569343 5561460.393849253 5575268.837284226 7085688.652038165 6508123.861173942 7693520.335185654 8569522.976992952 6525271.6123886 1.355936855350601 0.9147551222692931 0.9263399286082266 0.8522956168277354 0.85441176528181 1.0858840938644734 0.9973721015410145 1.1790344972888283 1.3132821874760316 1.0 22.637606523986094 1.7468432981849416 4.00501837349274 1.1870060014877997 0.9827300242552304 0.1845424565205387 0.1556259103610206 0.2809068800838839 9.686594986917646 0.08221932724668479 0.04122603140053327 55.826872428193205 -1.7468432981849416 -0.2042759772325693 CQHAAEIITDLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 CQHAAEIITDLLR 13 0 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 ;;; 212.69 1.1922e-08 3562788000.0 2413705.0 2545504.0 2483316.0 2550798.0 2439313.0 2864535.0 2821013.0 1934485.0 3127087.0 2436197.0 False True 2400709.8804678367 2630229.5618503373 2832945.307430385 2873728.765260789 2749945.0516091036 2666516.4378400766 2684549.8238738207 2078846.093815789 2356458.309669004 2280716.8217268134 1.052611993561819 1.1532468813286934 1.242129351808551 1.26001121133705 1.2057371723715442 1.169157175690562 1.1770640696380932 0.9114880348196053 1.0332095099315504 1.0 21.12105589924826 1.7519023266835243 24.9956019456504 0.9789755891221056 1.185005996886205 0.6955421341121799 0.060089624812186236 2.211103173628523 4148.633953647458 0.028832885172607698 0.01598937210269895 56.480993413885585 -1.7519023266835243 0.20603040776409942 CQHGEEECK ddPTM_BT-474_Trastuzumab_2h_R1 3 CQHGEEECK 9 0 P13284 P13284 IFI30 Gamma-interferon-inducible lysosomal thiol reductase 0 ;; 145.25 9.7624e-05 1242490000.0 2015156.0 1799340.0 1498484.0 1459935.0 1485997.0 1524205.0 1818805.0 1274990.0 2392273.0 1573422.0 False True 2004306.6240008809 1859229.9441760012 1709457.5221435807 1644762.6213094913 1675229.9097557266 1418840.2959426336 1730822.4536401709 1370136.2280680356 1802729.3739658687 1473004.860885655 1.360692471032157 1.262202178381221 1.160524019666681 1.1166036616610795 1.1372874280594583 0.9632285226061952 1.1750283380595914 0.9301640914098757 1.2238448234868446 1.0 20.490330760569666 4.8607012924221085 0.6380192694385435 1.0516661264249691 1.6161221263797358 0.5544323993145811 0.08632688084127091 2.5740681690439327 0.7119518596201296 0.035207270047573985 1.1012121413110747 72560.67137459331 -4.8607012924221085 0.5644559999547667 CQSLTEDLEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 CQSLTEDLEFR 11 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 155.26 7.355e-05 139180000.0 140140.0 137700.0 144520.0 154800.0 183880.0 191170.0 160100.0 157750.0 173290.0 170490.0 False True 139385.50181101772 142283.26125859236 164867.1598096411 174397.66412799846 207296.02805785154 177954.8678657748 152355.35135860706 169522.1060382691 130585.00146703383 159609.18223616751 0.8732925002070019 0.8914478431952702 1.0329428263450005 1.092654330312582 1.2987725715624785 1.1149412920521196 0.954552546564475 1.0621074781739925 0.8181546928409937 1.0 17.28418412590637 4.221472803083781 3.925045755471536 1.0588770697054346 0.8764573461188808 0.2420717663345654 0.11583997820754334 0.2841156934001169 9.515588971276275 0.03062411945805095 0.08153045929041702 16652.245428070568 -4.221472803083781 -0.18241972358655378 CQSLTEDLEFRK ddPTM_BT-474_Trastuzumab_2h_R1 3 CQSLTEDLEFRK 12 1 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ;; 99.991 0.0029386 948620000.0 672080.0 731880.0 675000.0 730040.0 751120.0 910630.0 963110.0 812510.0 1158840.0 886040.0 False True 668461.5959551069 756240.1833691965 770034.1327948223 822462.9891473132 846770.6797629616 847680.2914924453 916520.6898625126 873143.6220421797 873259.4096604388 829492.1686229908 0.8058684834418571 0.9116905643902615 0.9283199551758607 0.9915259242442921 1.0208302281728039 1.0219268168615117 1.1049178335028704 1.0526243104761954 1.052763899037292 1.0 19.661868834952358 4.522700264797479 0.6296795586965375 1.0584526196307786 0.701087161618506 0.8802374706406089 0.02832079783582661 0.8016195231776798 0.2891592146356513 0.012984178440024745 0.19925113401174807 33319.637264531506 -4.522700264797479 -0.3573654580122726 CQVFEETQIGGER ddPTM_BT-474_Trastuzumab_2h_R1 2 CQVFEETQIGGER 13 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 198.55 2.9076e-07 321310000.0 239700.0 230784.0 219230.0 233150.0 215540.0 262820.0 271800.0 254220.0 304160.0 258310.0 False True 238409.48183317337 238465.50592812605 250095.6784186801 262666.76609459193 242987.74139432958 244651.8720117332 258651.9956231695 273191.18730300304 229203.8435351896 241824.4346496827 0.9858783798194075 0.9861100524170664 1.0342035071062172 1.0861878638322977 1.0048105426001805 1.0116921078142764 1.06958585883955 1.1297087810781388 0.9478109350993591 1.0 17.883600500524647 4.188128138514107 4.372621213815935 1.0467625519990098 0.9851365120480258 0.11245435052243613 0.048941610575372003 0.32372119793211684 12.80406929637581 0.01270173574885526 0.031104588896225246 15421.553985223518 -4.188128138514107 -0.061626039950984035 CQYVTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 CQYVTEK 7 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;P09972 H3BPS8;P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C 0 ;;; 159.2 0.0032394 1824380000.0 1584840.0 1234050.0 1217990.0 1179350.0 1044570.0 1719130.0 1666590.0 1361070.0 1841050.0 1601200.0 False True 1576307.3975322791 1275124.6082510233 1389472.4050411347 1328655.589078519 1177589.7978485422 1600290.5894967283 1585970.6747079417 1462639.9547734184 1387347.8963060912 1499010.0451437107 1.0515656000031393 0.8506444719179828 0.9269266804065516 0.8863553605814164 0.7855783232831146 1.067564953738057 1.0580120392428018 0.9757372604085481 0.9255094058913299 1.0 20.515578620408785 2.720689967604335 24.976059238512416 1.0059351182848388 0.8981743125060132 0.34107420341628547 0.073046494237621 944.2026544973094 1319618.1566716847 0.023554504282169667 0.022248298027230433 525.6418893053379 -2.720689967604335 -0.10776080577882563 CRDDSFFGETSHNYHK ddPTM_BT-474_Trastuzumab_2h_R1 5 CRDDSFFGETSHNYHK 16 1 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;; 230.93 1.1627000000000001e-15 6428170000.0 2783550.0 2963230.0 2832220.0 2819660.0 2684030.0 3248000.0 3302250.0 1459560.0 4006390.0 2801900.0 False True 2768563.676081476 3061859.3192396383 3230971.957902452 3176628.6668937486 3025825.3110078033 3023473.404969594 3142507.551679955 1568479.7786955063 3019068.8673755485 2623080.343172721 1.0554627818730047 1.1672762243859434 1.2317472342438667 1.2110298775871609 1.1535389371062672 1.1526423172050388 1.1980218447594195 0.5979533881903011 1.1509631701649914 1.0 21.32283056637492 1.7810267242284892 24.999999848642528 0.8742820957301344 1.1702074948679622 0.40175113706988397 0.1373694233362775 53.51596293360812 31516.32766743025 0.05932863851217568 0.03300945365624708 60.39857943840825 -1.7810267242284892 0.2959253991378278 CRDDSFFGETSHNYHKFDSEYER ddPTM_BT-474_Trastuzumab_2h_R1 1 CRDDSFFGETSHNYHKFDSEYER 23 2 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 250.06 1.3099e-38 639630000.0 280820.0 447460.0 412680.0 494620.0 463440.0 444770.0 492840.0 140030.0 666780.0 403120.0 False True 279308.09632203524 462353.4356047177 470781.756921137 557238.8412854691 522456.3369759127 414024.0967759621 468999.44636837015 150479.74965793223 502461.00339424453 377392.5364716043 0.7400996822390813 1.2251260714571814 1.2474591080222899 1.4765497126554774 1.3843843915424736 1.0970648774531715 1.242736411146961 0.39873536203134374 1.3314015377515305 1.0 18.525706366103638 CREEWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 CREEWAK 7 1 Q96PZ0;Q96PZ0-2;E7EUH7 Q96PZ0 PUS7 Pseudouridylate synthase 7 homolog 0 122.18 0.0039821 96325000.0 115020.0 121140.0 109380.0 113650.0 109400.0 124790.0 137660.0 112300.0 166380.0 119000.0 False True 114400.74509992321 125172.07166932366 124779.75325199675 128038.07834720309 123331.44153539784 116163.56102406279 131000.85988773197 120680.39624784548 125377.8783777776 111405.31811897423 1.0268876480182934 1.1235735760446135 1.1200520348475593 1.1492995173755176 1.1070516526301484 1.0427110930198775 1.175894132341428 1.0832552546456178 1.1254209448410848 1.0 16.765458578216553 -1.4863637935694303 6.156994086114359 0.9999259116553412 1.1076973547315643 0.3535201589318566 0.04295534271950678 4.063844712221959e-05 3.390154685749434e-06 0.03869019500150294 0.00911310731131742 0.032631437531234986 1.4863637935694303 0.1077714430762231 CRHENLLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 CRHENLLLR 9 1 Q6ZMV8 Q6ZMV8 ZNF730 Putative zinc finger protein 730 0 66.62100000000001 0.05764800000000001 481430000.0 31593.0 49738.0 42480.0 55399.0 50372.0 51011.0 55595.0 45696.0 51775.0 57295.0 False True 31422.906798312266 51393.49926274407 48460.81475722088 62412.50771981256 56786.575621764736 47484.72963697782 52905.65745647575 49106.06755958629 39015.744999455674 53638.38404728263 0.585828737320139 0.9581477923988226 0.9034726831908717 1.1635791947944494 1.0586928862679188 0.8852751715100082 0.986339510337206 0.9155023670418359 0.7273847952813607 1.0 15.710978153665643 4.738569507393745 19.789154024607264 0.958072631684171 0.5858281543652644 0.509582354661097 0.10873087862690044 0.05279745316642371 72644.58738933814 0.0264665566544907 0.15208733539588243 54773.375692126276 -4.738569507393745 -0.37224447731890664 CRS(ph)PGMLEPLGSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR 157.88 3.1345e-06 5492750000.0 738287.0 696953.0 730187.0 840350.0 656000.0 856360.0 808790.0 798800.0 854680.0 807490.0 True False 734312.144823397 720150.6592880154 832990.9827008203 946738.2238369725 739537.711583373 797161.848854607 769665.7378221599 858410.512224211 644055.5661252483 755955.2968730293 0.9713697990619842 0.9526365676209718 1.1019050810893782 1.2523732921154294 0.9782823331517527 1.0545092443323387 1.0181365763370442 1.135530785715746 0.8519757302969521 1.0 19.52794139818681 -0.49700286039575403 7.799840529350311 1.0000017544210282 1.0459971271186053 0.0005723810716283806 0.10540246257052863 0.0 0.0 0.09959244399745143 0.02347416416851313 0.318417654970033 0.49700286039575403 0.04599537269757703 CRSPGMLEPLGSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 CRS(0.019)PGMLEPLGS(0.019)S(0.963)R;CRS(0.006)PGMLEPLGS(0.019)S(0.975)R;CRS(0.028)PGMLEPLGS(0.058)S(0.913)R 159.83 1.276e-05 4155400000.0 2543490.0 2478530.0 2202620.0 2759220.0 2480210.0 3238180.0 2652240.0 2473260.0 3613100.0 2684280.0 True False 2529796.132448305 2561026.3727469738 2512729.750483756 3108536.969090803 2796050.0421435963 3014332.238455801 2523941.0186592904 2657827.2201598026 2722699.9180595516 2512966.9522722703 1.0066969365278828 1.01912457321862 0.9999056088707017 1.236998746155419 1.1126489505225514 1.199511293107212 1.004366976007025 1.0576451145752421 1.083460296044736 1.0 21.26096026795762 0.7841765398313965 0.8686041777860906 1.0028048141951922 1.086253290684843 0.08129788945321414 0.07874186307091549 2.4575331201913975 3.621440910917445 0.07952558369329085 0.027248365955818147 6.0838225718190255 -0.7841765398313965 0.08344847648965081 CS(ph)LCALET(ph)LKS(ph)PQHDPLEIPEQSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 CSLCALETLKSPQHDPLEIPEQSLK 25 1 A0A2R8YEW3;O60393-2;O60393 A0A2R8YEW3 NOBOX Homeobox protein NOBOX 3 CS(1)LCALET(1)LKS(1)PQHDPLEIPEQSLK;CS(1)LCALET(1)LKS(1)PQHDPLEIPEQSLK 90.518 0.013393 281040000.0 134375.0 202597.0 217867.0 228974.0 265375.0 304428.0 299687.0 293942.0 303982.0 329404.0 True False 133651.5399304659 209340.31867252747 248540.7798660886 257962.08492276698 299168.9332491427 283383.6089064297 285189.9948944843 315877.44464723254 229069.7092501116 308381.15470304684 0.433397235506056 0.678836289053104 0.8059532045835257 0.8365040502269651 0.9701271581826232 0.9189394506915045 0.9247970913433595 1.0243085215482903 0.7428135790940028 1.0 18.234355078706695 4.9380436698211785 0.8143306481616882 0.9382092581750398 1.1797534446361999e-17 0.8104963310690763 0.07431453707176054 1.2456871844061137 0.5110628319796202 0.024689465557478772 1.1360019281558316 86704.90561742829 -4.9380436698211785 -0.9382092581750398 down CS(ph)PTVAFVEFPSSPQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 CS(0.99)PT(0.01)VAFVEFPSSPQLK;CS(0.695)PT(0.305)VAFVEFPSSPQLK 221.78 3.7499000000000004e-15 94739000.0 209834.0 171618.0 174292.0 171316.0 192629.0 229315.0 229530.0 376050.0 283785.0 264910.0 True False 208704.27705874888 177330.2013847284 198830.79862677815 193004.588034575 217159.161348466 213462.9937994464 218426.7570102505 404112.76054320764 213849.98927417694 248003.2169991388 0.841538588023532 0.7150318593865022 0.8017266914221867 0.7782342115152692 0.8756304211538518 0.8607267130739988 0.8807416276822289 1.6294658006174612 0.8622871584561725 1.0 17.919999309236875 1.969370819581169 23.786838951004054 1.2391698601503622 0.813781487745697 0.38630336976711765 0.19223260166097547 284.15255588037917 220674.1628194256 0.07497074791852293 0.04846994012316074 93.19032355134938 -1.969370819581169 -0.4253883724046652 CS(ph)PVPGLS(ph)SSPSGSPLHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSPVPGLSSSPSGSPLHGK 19 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 K7ESE9;Q9H6U6-7 BCAS3 Breast carcinoma-amplified sequence 3 2 CS(1)PVPGLS(0.334)S(0.291)S(0.291)PS(0.046)GS(0.038)PLHGK 54.974 0.056455 313910000.0 95487.0 100500.0 125900.0 122010.0 130400.0 153580.0 163940.0 160700.0 193480.0 163990.0 True False 94972.90860160306 103845.08174646717 143625.62565758263 137456.45349003279 147005.66705864613 142963.37608843288 156009.5958883828 172692.25001806542 145799.44649917303 153524.0178010974 0.6186192229846931 0.6764093542745002 0.9355254488171426 0.8953416895857857 0.9575418176529467 0.9312117943242818 1.016190157884649 1.12485494121058 0.9496849326081854 1.0 17.228104847634786 5.257322678502434 0.50738483685991 1.0363611923727785 4.2203450262005305e-11 0.828068595582134 0.060110091298353936 2.6664416278071523 0.35705231465249737 0.03516490851735613 1.8354776581935708 180851.73457665538 -5.257322678502434 -1.036361192330575 CSATPSAQVKPIVSAS(ph)PPSR ddPTM_BT-474_Trastuzumab_2h_R1 3 CSATPSAQVKPIVSASPPSR 20 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 CSATPSAQVKPIVSAS(0.999)PPSR;CSATPSAQVKPIVS(0.002)AS(0.998)PPSR;CSATPSAQVKPIVS(0.004)AS(0.995)PPS(0.001)R 259.71 1.6004999999999998e-36 2945620000.0 2119250.0 1715350.0 1804020.0 1827090.0 1946550.0 2489340.0 2383590.0 2322770.0 3001670.0 2435070.0 True False 2107840.1934708073 1772444.3877990302 2058010.3351770611 2058399.406664241 2194431.604394229 2317257.785076051 2268286.645501954 2496106.892187071 2261948.6488173055 2279661.7478316864 0.9246284873076858 0.7775032368222614 0.9027700434656807 0.902940714174855 0.9626128115197247 1.0164919367007514 0.995010179759979 1.0949461667114684 0.9922299441874529 1.0 21.120388345061603 3.1558224747569175 1.166746826254446 1.0355471079717735 0.8539683015909311 0.691136287397907 0.04524033580314996 0.22910113176923652 0.6651023145160636 0.017407432057364593 0.02489261707990812 1431.6025877896784 -3.1558224747569175 -0.18157880638084245 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(ph)ISPLDLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 CSDAAGYPHATHDLEGPPLDAYS(0.034)IQGQHT(0.638)IS(0.328)PLDLAK 202.7 4.924e-30 435030000.0 56129.0 53703.0 62674.0 63526.0 68336.0 93145.0 70349.0 35110.0 103970.0 74201.0 True False 55826.807700518184 55490.471890850946 71497.95442782635 71568.3850865325 77038.18454079471 86706.10538974535 66945.95011072248 37730.086484967505 78347.98662662302 69465.42865332785 0.8036631858866924 0.7988214132785401 1.029259529724375 1.0302734248384127 1.1090147435101745 1.2481907485586583 0.9637304686453602 0.5431491205972712 1.1278701959448665 1.0 16.084007539840425 -0.9246724229430394 9.916914468343947 0.9999999999572704 0.9439152154284098 0.0 0.19239314739501717 0.0 0.0 0.20515664099457154 0.048355884017571876 0.11893990219952728 0.9246724229430394 -0.056084784528860565 CSDAAGYPHATHDLEGPPLDAYSIQGQHTIS(ph)PLDLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.064)IS(0.936)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.051)IS(0.949)PLDLAK 320.13 2.1383999999999994e-110 697370000.0 217414.0 166731.0 204991.0 185717.0 204516.0 268729.0 267585.0 113405.0 318560.0 227412.0 True False 216243.46718096628 172280.5405439823 233851.95098628706 209228.75315800714 230559.90033869699 250152.39675002242 254640.89127603325 121867.85695892177 240055.15648530368 212898.3714627915 1.015712171470318 0.8092149289835783 1.0984205721233413 0.9827635210191089 1.0829575574230836 1.1749850176460457 1.1960678211225169 0.5724226828114595 1.1275575047189048 1.0 17.699805388569242 1.7688797515022938 24.99999999969718 0.855675514969189 1.0472580814996497 0.13119723443813835 0.1670782564897406 38.005208303435055 31354.533435616187 0.07620575878902835 0.04226862684291727 58.73267095864115 -1.7688797515022938 0.19158256653046069 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 261.87 8.582499999999996e-63 773940000.0 284250.0 286960.0 274260.0 327290.0 326930.0 368040.0 371310.0 116100.0 442070.0 286130.0 False True 282719.629583144 296511.29012901674 312873.4240893458 368724.8804422004 368562.59763407306 342598.2610729706 353348.3167580536 124763.97154385429 333127.7719345122 267868.93843178224 1.0554401388914443 1.106926737623701 1.1680093478588403 1.376512269772193 1.375906440633968 1.2789771859278845 1.3191089598768102 0.46576498295873797 1.24362225006297 1.0 18.031167773166533 1.774808769934492 24.99999999988118 0.8486536507759217 1.244191505961148 0.3493070695307178 0.20675165951628827 37.837141131303234 26107.179213326657 0.09327982196902307 0.05176966613078085 59.539991722668205 -1.774808769934492 0.3955378551852262 CSDGWWR ddPTM_BT-474_Trastuzumab_2h_R1 1 CSDGWWR 7 0 O43639;P16333-2;P16333 O43639;P16333-2 NCK2;NCK1 Cytoplasmic protein NCK2;Cytoplasmic protein NCK1 0 104.76 0.018793 122980000.0 139030.0 180730.0 131270.0 167860.0 125560.0 160170.0 156600.0 142840.0 164930.0 163650.0 False True 138281.47792768507 186745.4887964081 149751.6749807057 189111.05878892628 141549.32174757362 149097.82489962425 149024.6597299057 153499.44612682317 124285.21144877306 153205.71689218606 0.9025869316939167 1.218919845711924 0.9774548758261349 1.234360326919181 0.9239167089775424 0.9731870841644075 0.9727095225485439 1.0019172211102527 0.8112308990155704 1.0 17.22511060706601 3.1867102140765775 24.999988382052585 0.9539057145819788 1.0854547033593633 0.2839248719967019 0.10559411493899065 124.29528178160203 59929.21155815444 0.028059058491566646 0.0335370260722746 1537.1286385820515 -3.1867102140765775 0.13154898877738452 CSDVSELSS(ph)SPPGPYHQEPYVCKPEER ddPTM_BT-474_Trastuzumab_2h_R1 1 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 CSDVS(0.002)ELS(0.118)S(0.436)S(0.436)PPGPY(0.008)HQEPY(0.001)VCKPEER 50.783 0.06449500000000001 359500000.0 47793.0 42237.0 35512.0 36175.0 34483.0 54547.0 50976.0 39961.0 55736.0 45341.0 True False 47535.68779830151 43642.83301219432 40511.78092416262 40754.75129089371 38874.205653246114 50776.294279826456 48510.09613276924 42943.0927378464 42000.609624136356 42447.29856161692 1.1198754551905874 1.0281651481034053 0.954401865300222 0.9601259131186809 0.9158228431619961 1.1962196888953742 1.1428311759899517 1.011680229202567 0.9894766227152915 1.0 15.373385119999757 2.7643834676068204 24.99890421763697 1.0702261819388736 0.9932148247470092 0.17401580988828613 0.07866446670908506 1401.7077616547397 1356980.5196643942 0.025562573985598396 0.027103673220727636 581.2774396751981 -2.7643834676068204 -0.07701135719186447 CSDVSELSSS(ph)PPGPYHQEPYVCKPEER ddPTM_BT-474_Trastuzumab_2h_R1 5 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 CSDVSELS(0.003)S(0.228)S(0.769)PPGPYHQEPYVCKPEER;CSDVSELS(0.001)S(0.15)S(0.848)PPGPYHQEPYVCKPEER;CSDVSELS(0.005)S(0.241)S(0.754)PPGPYHQEPYVCKPEER;CSDVSELSS(0.249)S(0.751)PPGPYHQEPYVCKPEER;CSDVSELS(0.008)S(0.435)S(0.557)PPGPYHQEPYVCKPEER 226.65 8.4141e-35 11000380000.0 2838360.0 2374400.0 2385960.0 2307890.0 2253610.0 3293930.0 2972140.0 2842140.0 3684750.0 3059640.0 True False 2823078.5851314403 2453430.468644893 2721882.4288639072 2600068.6373667093 2540593.875307019 3066228.372177182 2828366.233522615 3054234.9188944935 2776692.7356203594 2864371.1557104047 0.985584071220434 0.8565337155255661 0.9502547962185584 0.9077275590431839 0.8869639223401953 1.0704717389938645 0.9874300779366492 1.066284623347633 0.9693899933619811 1.0 21.44978701367545 2.7445071245773702 24.976888295393767 1.0237547771479705 0.9153171235610189 0.5691874597715808 0.04393819457015829 308.7720308246669 1296923.896563832 0.012498025436536485 0.012953385018709958 555.2737262801443 -2.7445071245773702 -0.10843765358695157 CSENKLPAELQELPGLSHQYWSAPSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSENKLPAELQELPGLSHQYWSAPSDK 27 1 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;H7C4A8;G3V5M0;G3V359 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 201.98 2.6058999999999997e-25 1333600000.0 2865500.0 1971500.0 2005700.0 1854500.0 2070300.0 2833800.0 2857900.0 2663900.0 3638800.0 2571700.0 False True 2850072.46638698 2037120.185703085 2288085.1261430746 2089279.5098538296 2333940.4333705143 2637906.0760476724 2719652.458761798 2862693.7450101105 2742066.4974219045 2407571.9042568603 1.183795367169607 0.8461305691851718 0.9503704217919642 0.8677952696489548 0.9694167095254114 1.0956707342296008 1.1296246039227922 1.1890376939307787 1.138934414616494 1.0 21.199147455395273 2.68718136306444 3.156315410575942 1.1343414349467174 0.9489890409157703 0.3575897044593642 0.09670650222474325 0.23114187799299465 4.621598495868429 0.03144858606101666 0.030372486105650884 486.6103736509135 -2.68718136306444 -0.18535239403094705 CSGCHSYQESTK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSGCHSYQESTK 12 0 Q9UPT9-2;Q9UPT9 Q9UPT9-2 USP22 Ubiquitin carboxyl-terminal hydrolase 22 0 123.64 0.00033718 66226000.0 96499.0 96145.0 101280.0 102410.0 100670.0 130500.0 124180.0 129170.0 140270.0 122580.0 False True 95979.4601060468 99345.1282041202 115539.34365845892 115375.09549966622 113489.72778216189 121478.84216395675 118172.9389863326 138809.32131196966 105702.3380217024 114756.83945398209 0.8363724599136848 0.865701152774933 1.006818802331957 1.0053875311364955 0.9889582906095256 1.0585760530000499 1.029768156291202 1.209595192516893 0.9210983722158836 1.0 16.80822061458827 4.5937168118575995 0.6693725030707018 1.0661474485410734 0.6958370011493932 0.46396225286952386 0.07280211717708981 2.110740296593317 0.814512566093641 0.03200286859649385 0.5798133772923203 39238.8988916125 -4.5937168118575995 -0.3703104473916802 CSGPGLS(ph)PGMVR ddPTM_BT-474_Trastuzumab_2h_R1 6 CSGPGLSPGMVR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR 290.86 4.2653999999999994e-36 5567640000.0 3939160.0 3540560.0 3509080.0 3636640.0 3512760.0 4327100.0 4523200.0 3735160.0 5006570.0 4116150.0 True False 3917952.0002418156 3658405.399286286 4003127.9625298628 4097038.251126904 3960089.16424026 4027977.7618977595 4304395.535698011 4013896.6059581675 3772767.9081009086 3853453.782986694 1.016737768476655 0.9493834895434422 1.0388415660268178 1.0632119864044185 1.0276726768397664 1.0452902743200405 1.117022748450302 1.041636109320901 0.9790614136227558 1.0 21.877720657194466 4.136941569232587 7.521343377909331 1.0455074510517977 0.9834410831865944 0.24538415097354738 0.038117144022249035 0.25252688416482666 16.29969888992153 0.009407473517169751 0.020552989061569014 13706.973376521808 -4.136941569232587 -0.062066367865203254 CSHALIR ddPTM_BT-474_Trastuzumab_2h_R1 1 CSHALIR 7 0 O95865;A0A140T971;Q5SSV3;Q5SRR8 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 114.6 0.005868 106070000.0 114200.0 161790.0 167030.0 197780.0 157410.0 119190.0 141650.0 99541.0 118120.0 132060.0 False True 113585.1598888129 167175.08234587984 190546.37214921392 222818.92772115985 177455.23045783362 110950.67584308065 134797.84834445166 106969.25487895608 89010.90872690888 123631.81773774562 0.9187372795064437 1.3522011194602066 1.5412405611750448 1.8022781820923737 1.4353524335803352 0.8974281691662508 1.0903168036434765 0.8652243155226024 0.7199676455111543 1.0 16.915690555746597 2.740003404184647 24.045001490869 0.917630355192379 1.435841620925526 0.5502779937439266 0.2232953220202285 60.08227973873156 1001316.187347995 0.07404625826611949 0.07473612476713926 549.5451814093328 -2.740003404184647 0.518211265733147 CSKQSPSGAHGT(ph)HFGDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 CSKQSPSGAHGTHFGDDR 18 1 A0A0A0MRP9;Q96C92-3;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 1 CS(0.011)KQS(0.011)PS(0.011)GAHGT(0.967)HFGDDR;CS(0.015)KQS(0.015)PS(0.015)GAHGT(0.955)HFGDDR;CS(0.015)KQS(0.015)PS(0.015)GAHGT(0.955)HFGDDR;CS(0.018)KQS(0.018)PS(0.018)GAHGT(0.947)HFGDDR 72.433 0.032063 4372670000.0 551868.0 1544857.0 1614767.0 2206860.0 1780000.0 988301.0 988192.0 913340.0 289515.0 885543.0 True False 548896.8040062992 1596276.6313592233 1842112.1577936248 2486248.249725544 2006672.4491134207 919982.0780803132 940389.3776999678 981498.0686465456 218167.90755224368 829026.8875884938 0.6620977102479173 1.9254823399064125 2.222017386133318 2.9989959155096177 2.4205155214573426 1.1097131973082242 1.1343291656503562 1.1839158456025065 0.26316143760651617 1.0 19.661059367426272 2.6589146058505815 5.684438621501098 0.9729234026225287 2.0999945907886595 0.45842619603914025 0.600746461827075 0.2231286650478483 12.25869252945817 0.20752378478030511 0.1957305560934393 455.9472554610124 -2.6589146058505815 1.1270711881661306 CSLHSAS(ph)PASVR ddPTM_BT-474_Trastuzumab_2h_R1 1 CSLHSASPASVR 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 CSLHS(0.002)AS(0.998)PASVR 158.93 4.6464e-05 365200000.0 197720.0 293480.0 339860.0 360380.0 330680.0 399280.0 350910.0 310440.0 359050.0 359210.0 True False 196655.49748875733 303248.3043875933 387709.33388392406 406004.07104940567 372790.13790608215 371678.7134040211 333935.1426936215 333606.60918237886 270566.9385235063 336284.9102648469 0.5847883490635305 0.9017600704972605 1.1529192123981327 1.2073217044727051 1.1085544623827601 1.1052494538375188 0.993012569105837 0.9920356192005204 0.8045765071956891 1.0 18.359324518319166 4.645465280375376 3.0396793560145734 1.048900245055323 0.5545012525924196 0.6313970049160993 0.10643593583072025 0.2018526991029662 2.945927955539391 0.028137924452161105 0.21093835931417718 44204.37763218887 -4.645465280375376 -0.49439899246290353 CSNNVVHVHSCADSCALLVNLLQYVMSTGDLHPPPRPPS(ph)PTEIAGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSNNVVHVHSCADSCALLVNLLQYVMSTGDLHPPPRPPSPTEIAGQK 47 1 H7C3T2;Q2TAZ0-3;Q2TAZ0 H7C3T2;Q2TAZ0 ATG2A Autophagy-related protein 2 homolog A 1 CSNNVVHVHSCADSCALLVNLLQYVMSTGDLHPPPRPPS(0.556)PT(0.444)EIAGQK 181.49 3.8383999999999997e-29 212200000.0 37554.0 41386.0 42151.0 42660.0 44811.0 56206.0 64619.0 13094.0 65594.0 39934.0 True False 37351.813436641656 42763.50799163467 48085.49441694016 48060.751625971665 50517.4152343941 52320.611514692384 61493.13210144806 14071.14076998476 49429.23761456868 37385.3779307825 0.9991022026257702 1.1438565117840873 1.2862112697100048 1.2855494390067201 1.3512613227536452 1.3994939842941232 1.64484446874658 0.37638086195188136 1.3221542846533447 1.0 15.190186496946948 1.7486301391956995 24.999999999999996 0.8482680103306102 1.2998993132318046 0.31609667118673035 0.2677749734012979 2.6152260774287965 6506.192158178951 0.11947879765373558 0.06625710361178058 56.05703707944482 -1.7486301391956995 0.45163130290119446 CSPTVAFVEFPSS(ph)PQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 CSPTVAFVEFPS(0.187)S(0.813)PQLK 98.439 0.001917 23615000.0 87545.0 70436.0 71773.0 65025.0 58122.0 83372.0 79325.0 70459.0 102470.0 78998.0 True False 87073.66744716383 72780.41968053886 81878.0145379006 73257.15833283644 65523.49218391583 77608.68987657779 75487.74669907255 75717.00836355245 77217.64152765271 73956.28000640945 1.1773667826399266 0.9841006020615332 1.1071137505943323 0.9905468247792828 0.8859760412264815 1.0493860679559843 1.0207077301958722 1.0238076922878003 1.0440985068605482 1.0 16.17438503869829 6.991162958420815 1.5474255185154169 1.0107665153941872 199.7581887354852 0.4375973444905439 0.0549249716219962 1611.2656429348833 4.166757057514118 0.014193857241354784 1136440.2601925635 9798575.841180032 -6.991162958420815 198.747422220091 CSS(ph)PTVGPPPLPQK ddPTM_BT-474_Trastuzumab_2h_R1 6 CSSPTVGPPPLPQK 14 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YDJ2;E9PI79 E9PP16 PPFIBP2 Liprin-beta-2 1 CS(0.001)S(0.999)PTVGPPPLPQK;CSS(0.997)PT(0.003)VGPPPLPQK;CS(0.002)S(0.993)PT(0.005)VGPPPLPQK;CS(0.004)S(0.993)PT(0.003)VGPPPLPQK;CS(0.022)S(0.97)PT(0.009)VGPPPLPQK;CS(0.02)S(0.967)PT(0.013)VGPPPLPQK 267.93 4.6637e-25 2041660000.0 3734110.0 3015970.0 3119580.0 3153470.0 3342440.0 4102930.0 4005170.0 3447270.0 4513920.0 3837250.0 True False 3714005.966658619 3116354.7382576354 3558789.748124557 3552698.97866744 3768079.9218059937 3819304.106358346 3811424.6258647866 3704522.792282369 3401524.899429119 3592353.4197649895 1.03386430361342 0.8674967003835347 0.9906569126924522 0.9889614309996971 1.0489168190062157 1.063176046472678 1.060982642992328 1.0312244813943494 0.9468792465446358 1.0 21.77649786034431 3.656081754070659 2.2796545073765535 1.0303367519759863 0.9507348021046836 0.2189833173433161 0.05054361220521392 0.3673407723484057 3.7231788821520047 0.01394901336310733 0.02570684010352577 4529.828439526105 -3.656081754070659 -0.07960194987130265 CSWQDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 CSWQDLK 7 0 Q08170;A0A0D9SEM4;Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q08170;Q13247 SRSF4;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 0 ; 143.61 0.0056838 353030000.0 949290.0 832280.0 781230.0 749730.0 750920.0 919590.0 919800.0 909690.0 1230930.0 962440.0 False True 944179.1281160344 859981.9366761149 891220.39342711 844645.7411284503 846545.2109484549 856020.9077820167 875305.7600227781 977575.687112221 927583.7951169463 901016.2552136597 1.0479046550521327 0.9544577378042816 0.9891279855054038 0.9374367401708616 0.9395448817376908 0.9500615586330646 0.9714650040528016 1.0849700895578256 1.0294861937834703 1.0 19.781193608338658 1.7604026884566442 24.999999999999964 1.0456562050903888 0.9669470559248078 0.4223372925127872 0.03608451045268687 8.722177128209477 9991.338646893595 0.016242777005327662 0.00900775636043444 57.59737467516279 -1.7604026884566442 -0.07870914916558103 CTELNQAWSS(ph)LGK ddPTM_BT-474_Trastuzumab_2h_R1 1 CTELNQAWSSLGK 13 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 CTELNQAWS(0.005)S(0.995)LGK 191.49 3.576099999999999e-07 0.0 321100.0 225740.0 248670.0 217770.0 220820.0 312460.0 313150.0 287940.0 366900.0 262970.0 True False 319371.23327756365 233253.61943728814 283680.5745216132 245339.659671539 248940.11809731773 290860.37565172417 298001.7381508296 309427.5449296939 276482.41120811756 246187.02946005625 1.2972707537761712 0.9474651038637819 1.1522969960837854 0.9965580242372 1.0111829150516158 1.1814610066567952 1.2104688813395845 1.2568799648313658 1.1230583991955463 1.0 17.90939522884006 2.7139284805591246 22.77218988385461 1.1818616050170145 1.0728134267165854 0.0697075147545374 0.11180424548567736 415.2776083757365 383918.77071913774 0.03411004287715389 0.03218141048265168 517.5215996835435 -2.7139284805591246 -0.10904817830042912 CTHWAEGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 CTHWAEGGK 9 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;; 114.51 0.001626 1513250000.0 3125590.0 2722580.0 2697260.0 2514960.0 2553300.0 3479810.0 3302560.0 2453260.0 4124090.0 3266150.0 False True 3108762.1707256986 2813199.429465638 3077010.7629957986 2833353.678135342 2878447.6204052204 3239258.9252916393 3142802.5557956393 2636334.7186018615 3107763.2794747497 3057701.510708302 1.016699033518667 0.9200372958621373 1.0063149565841776 0.9266286026326387 0.9413762626354074 1.0593770889498237 1.0278317045628251 0.8621949230064537 1.0163723530865023 1.0 21.54401614867202 -0.6940034309791834 8.098484207819887 0.9999999999850404 0.968929603709457 0.005837150285490145 0.058233936584621546 0.0 0.0 0.05624637149701487 0.01325739680211702 0.20230031966440487 0.6940034309791834 -0.03107039627558339 CTKEEHLCTQR ddPTM_BT-474_Trastuzumab_2h_R1 6 CTKEEHLCTQR 11 1 P06753-2;A0A087WWU8;P06753-5;P06753-7;J3KN67 P06753-2;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;;;;; 184.87 2.834e-06 3141430000.0 2064540.0 2218350.0 2309030.0 2528130.0 2332980.0 2805220.0 3119540.0 2326310.0 3758310.0 2933510.0 False True 2053424.7460319563 2292186.4387291092 2634121.35355145 2848190.9987849914 2630071.1743441722 2611301.744177586 2968635.932399935 2499911.0649628243 2832124.859273862 2746290.8802957335 0.7477083948990989 0.8346480903298473 0.9591559919784592 1.0371046341887444 0.9576812103971134 0.9508467449363517 1.0809619453276043 0.9102863367093955 1.0312545111641218 1.0 21.38905300957071 4.354450722206755 2.3712519450303797 0.9898194188363151 0.7518298030674472 0.7600241450180794 0.046416605243823725 0.14416245749003828 1.5025928508743873 0.01148450593062974 0.05039128454386997 22617.81889159464 -4.354450722206755 -0.2379896157688679 CTLAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 CTLAEK 6 0 G3V1A4;P23528;E9PP50;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 ; 122.79 0.04436 1204130000.0 2171200.0 1938930.0 1957990.0 1790820.0 1718180.0 2077380.0 2367500.0 2075120.0 2908800.0 2121670.0 False True 2159510.5004429966 2003466.1129420632 2233657.972845833 2017537.6283830896 1936980.0385492675 1933775.610226518 2252974.98027172 2229975.9916458493 2191965.2159230625 1986263.2041469256 1.0872227285559963 1.0086609411880667 1.1245528629752573 1.01574535749888 0.9751879985015256 0.9735747035887168 1.1342781639250794 1.1226991402700808 1.1035623130643872 1.0 20.9216253795809 2.225105341944733 24.998947378327237 1.1039646999162922 1.030862763288203 0.19780614276964803 0.055799694706018754 308.7826223231054 573692.6123412169 0.020970958282040583 0.015575914191509763 167.92112761865604 -2.225105341944733 -0.07310193662808917 CTMHCNDK ddPTM_BT-474_Trastuzumab_2h_R1 4 CTMHCNDK 8 0 E7EQY1;Q96C01;C9JF51 E7EQY1 FAM136A Protein FAM136A 0 ;;; 87.639 0.015181 210004000.0 489631.0 446390.0 523703.0 378496.0 413976.0 504853.0 545463.0 457943.0 783381.0 492999.0 False True 486994.8810991178 461247.8213015464 597435.8302919213 426413.5547919304 466693.38977201 469953.7004061312 519076.87081898766 492117.0320474359 590327.2493175962 461535.3817423212 1.0551626167005563 0.9993769482207643 1.294452936710006 0.9239022004817833 1.011175758638952 1.018239812150545 1.1246740582692583 1.0662606844781157 1.2790509084895696 1.0 18.816081724924445 1.422319751275493 24.998742640772047 1.1505692535183973 1.062690372928135 0.07053242203192 0.11166535771711769 187.3729416325155 85477.80637847858 0.06730130318951316 0.025927998607109613 26.443549590763165 -1.422319751275493 -0.08787888059026239 CTVDVPEDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 CTVDVPEDLR 10 0 B4DXZ6;P51114;P51114-3;C9JZE0;C9JY20;C9J5B4;C9IZ22;C9JAJ4;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ; 147.2 6.353600000000001e-05 302850000.0 364790.0 419810.0 432140.0 428780.0 423590.0 469180.0 424170.0 402070.0 462390.0 436160.0 False True 362826.01117197884 433783.12206949614 492981.5557717846 483063.504036196 477531.6756853672 436746.69093092135 403651.27661324386 432074.5050700911 348440.18020856177 408323.89538463677 0.8885740346648109 1.06235056770527 1.2073296746628097 1.1830400069561329 1.1694923590879673 1.0696084551199498 0.9885565874928987 1.0581661028264866 0.8533426139078508 1.0 18.639354471939093 2.338868219257812 3.3017260539643534 0.9870680940172549 1.11115932692995 0.2746490782022849 0.09647041908663462 0.3604002326428184 7.811225785035482 0.03833429874954424 0.03057046338282013 218.2067692672165 -2.338868219257812 0.12409123291269508 CTVFHGAQVEDAFR ddPTM_BT-474_Trastuzumab_2h_R1 8 CTVFHGAQVEDAFR 14 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;;; 229.48 1.2701e-12 39271030000.0 17042860.0 16256890.0 18024860.0 17659660.0 15426420.0 19696770.0 19684010.0 17004390.0 21678940.0 18912540.0 False True 16951103.135399766 16797990.756152455 20562603.613108277 19895371.145314276 17390883.14744509 18335178.65110927 18731819.23607958 18273343.92834282 16336455.719913056 17705525.5053599 0.9573905688519807 0.9487428515503417 1.1613664675969924 1.1236814823311208 0.982229143223139 1.0355625223074436 1.0579646015256083 1.032070125386057 0.9226755633413766 1.0 24.077696328201625 1.3349128563432344 7.22229201570992 0.9620708123160081 1.0406169439107573 0.17442687226164022 0.06603086585834729 0.3679228331474127 22.970676621131435 0.04693866363316395 0.016998777701926118 21.622846054956778 -1.3349128563432344 0.07854613159474921 CTYVVLDEADR ddPTM_BT-474_Trastuzumab_2h_R1 1 CTYVVLDEADR 11 0 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 110.38 0.0041923 72762000.0 129160.0 166790.0 177970.0 200690.0 207010.0 169680.0 165230.0 123120.0 147320.0 162190.0 False True 128464.61691102509 172341.50432331575 203026.62905702923 226097.33342279095 233371.49645560046 157950.4209837563 157237.19366010427 132307.83959069202 111014.95998686262 151838.8953421548 0.8460586901764666 1.1350287021975511 1.3371187178326582 1.4890607107836347 1.5369678232294797 1.0402500665447398 1.0355528028953642 0.8713698772145874 0.731136509763857 1.0 17.21218187605631 2.2717088515627473 2.152528385773267 0.8744618367300828 1.2739048479135353 0.42256782781689894 0.196729568292987 0.3124878489695188 2.9549520226506156 0.09640672399635813 0.0667411604941275 186.94284664614315 -2.2717088515627473 0.3994430111834525 CVDKFDIIGIIGEGTYGQVYK ddPTM_BT-474_Trastuzumab_2h_R1 1 CVDKFDIIGIIGEGTYGQVYK 21 1 Q9NYV4-3;J3QSD7;A0A590UJE9;Q9NYV4;Q9NYV4-2;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;Q9BVE2;A0A087X209;A0A2R8Y644 Q9NYV4-3;Q9NYV4;Q9NYV4-2;A0A2R8Y4Z0 CDK12;CDK13 Cyclin-dependent kinase 12;Cyclin-dependent kinase 13 0 150.83 6.1708e-08 139100000.0 201940.0 165550.0 136870.0 133060.0 143800.0 184280.0 163420.0 185740.0 286430.0 183980.0 False True 200852.77747764302 171060.23167291182 156140.1063046333 149905.3823570509 162112.0776306235 171541.1573484596 155514.75027497567 199600.8619686092 215843.16446536148 172238.23888679722 1.1661334833413652 0.9931605941775818 0.9065356642856506 0.8703374078016178 0.9412084022594478 0.9959528061663717 0.9029049024194158 1.1588649724861386 1.2531663459890774 1.0 17.39404594776411 1.6814630813452076 6.546591762704632 1.1548493604143542 0.9632230755068925 0.38705523520636276 0.096485987157695 0.12128396232057247 10.765472541158411 0.048827315685736915 0.02482930447986851 48.024525365060285 -1.6814630813452076 -0.1916262849074617 CVELVHEEMQR ddPTM_BT-474_Trastuzumab_2h_R1 1 CVELVHEEMQR 11 0 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 89.266 0.012361 408740000.0 337730.0 385610.0 397130.0 391980.0 327930.0 380900.0 408860.0 262750.0 389370.0 414280.0 False True 335911.6992053308 398444.79574383266 453042.45208416035 441604.6278093853 369689.9417066087 354569.279542155 389081.87980312406 282357.73921746574 293414.98079069145 387840.295717048 0.8661083000266633 1.0273424400298035 1.168115992812364 1.1386249254810838 0.9532014743932615 0.9142146482913004 1.0032012766589418 0.7280257939558248 0.7565355741290861 1.0 18.565103178374123 2.319974640958626 1.318564313394011 0.8163636901699834 1.0459233236019037 0.321841490477899 0.11326973112648613 0.4471491294128705 1.5383008675852952 0.0679804991448971 0.042553450652193056 208.9174137592781 -2.319974640958626 0.2295596334319202 CVFELPAENDKPHDVEINK ddPTM_BT-474_Trastuzumab_2h_R1 2 CVFELPAENDKPHDVEINK 19 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 0 ; 244.46 9.7452e-25 2364140000.0 1470970.0 1303610.0 1162800.0 1037060.0 1196380.0 1678900.0 1597020.0 1331250.0 2096240.0 1557360.0 False True 1463050.4609601323 1346999.8708011124 1326512.1327612167 1168351.6896678421 1348731.9015001778 1562841.5947054941 1519766.0413911468 1430594.6349505286 1579649.7401768975 1457967.9514770242 1.003486022774341 0.9238885322798122 0.9098362768655968 0.801356222188711 0.925076508117903 1.0719313775877073 1.0423864529062636 0.9812250217854483 1.083459851484802 1.0 20.475527576538177 2.831991927947455 5.971088560998114 1.0304690019605411 0.9055489109335344 0.5654054702600488 0.05382917015576946 0.18219984935990247 9.521250162891961 0.017157754343718287 0.018223862310258847 679.1910086565103 -2.831991927947455 -0.12492009102700674 CVFS(ph)YNSNCQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 CVFSYNSNCQEK 12 0 Q6NT55 Q6NT55 CYP4F22 Cytochrome P450 4F22 1 CVFS(0.348)Y(0.305)NS(0.348)NCQEK 52.344 0.096178 1964700000.0 1712800.0 1355100.0 1188900.0 1387600.0 1302500.0 1198000.0 1626700.0 1542900.0 1676000.0 1724500.0 True False 1703578.4751099707 1400203.6843247502 1356286.7858959497 1563270.0177261648 1468365.654477658 1115185.079788663 1548010.3064025398 1658039.0326874515 1262972.2572494 1614440.9335812705 1.0552126371888804 0.8672994193839699 0.8400968766861824 0.9683042502263649 0.9095195890632074 0.6907561971405657 0.9588522405515515 1.027005075378923 0.7822969741282407 1.0 20.622603228369464 -1.592445484165393 6.207603320699286 1.0002804223319504 0.9049943655838495 0.07333723040163964 0.1053407176679095 0.00040744519304167817 2.6750321573887883e-05 0.10165220456754272 0.0238895218242391 0.02555962724150282 1.592445484165393 -0.09528605674810087 CVGAELEYDSEHSDWHGFD ddPTM_BT-474_Trastuzumab_2h_R1 1 CVGAELEYDSEHSDWHGFD 19 0 Q9GZN8-2;Q9GZN8;H7BYU9 Q9GZN8-2 C20orf27 UPF0687 protein C20orf27 0 143.88 1.4084e-07 111530000.0 40511.0 56522.0 41710.0 57792.0 54380.0 58227.0 48760.0 23325.0 59633.0 53009.0 False True 40292.8932771952 58403.30060172951 47582.405450180864 65108.46127445272 61304.97066448751 54201.904541614706 46401.29251871135 25065.629941950072 44937.24619126101 49625.920236711856 0.8119324152580178 1.1768708836662418 0.9588216243289075 1.3119849659994278 1.2353417402048663 1.09220956071093 0.9350213013155367 0.5050914889313675 0.9055196553920566 1.0 15.59880623462381 2.0211170636749656 4.849987327625911 0.7408932524973308 1.1070153074509026 0.3352854865656546 0.17995855650039883 0.16270099801079824 10.05827916136291 0.07210392818954522 0.0492012514155208 104.9825369972514 -2.0211170636749656 0.36612205495357175 CVHCVPLEPFDEDYLNHLEPPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 CVHCVPLEPFDEDYLNHLEPPVK 23 0 Q8TAT6;Q8TAT6-2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 109.37 0.0006707000000000001 166390000.0 67280.0 64020.0 75141.0 62901.0 64837.0 73182.0 81732.0 61226.0 94892.0 83293.0 False True 66917.77195551075 66150.86699909274 85720.19966271966 70864.26015061526 73093.60763099264 68123.10059189805 77778.31091343955 65794.99501932845 71507.13808765521 77977.16942927508 0.8581713397048203 0.8483363461800351 1.0992986830647589 0.9087821559730865 0.9373719021346139 0.8736287953320155 0.9974497854014066 0.8437725490793071 0.9170265939508339 1.0 16.250764165415223 2.883972864500531 15.429612914935326 0.9156131295515127 0.9340363620443777 0.0 0.07861724407606194 10.019097944616968 1288.6213938384337 0.024009602815157644 0.025466820237448427 765.548772554214 -2.883972864500531 0.018423232492864927 CVHIWNTQTGALVHSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 CVHIWNTQTGALVHSYR 17 0 Q9BZK7;A0A0D9SFI2 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 0 144.3 2.9885e-07 293660000.0 151120.0 183220.0 165480.0 154260.0 152410.0 160340.0 182160.0 135220.0 221640.0 181590.0 False True 150306.38671101027 189318.36694117097 188778.1456220553 173789.30018336602 171818.5100951554 149256.07319976116 173348.2248812237 145310.80303324733 167019.79182384047 170000.77073297952 0.884151207450093 1.1136324036938257 1.1104546456355155 1.0222853663195277 1.0106925360063868 0.8779729206886827 1.0196908174816572 0.8547655543367344 0.9824649094454914 1.0 17.37518176156524 2.9435891918570136 4.995558544664616 0.9371794334049479 1.0414447872965396 0.21577627335211313 0.07632743383107553 0.2637259944980281 13.915519982615358 0.022693340551627073 0.024667328937604097 878.191424366822 -2.9435891918570136 0.10426535389159164 CVLLSNLSSTSHVPEVDPGSAELQK ddPTM_BT-474_Trastuzumab_2h_R1 1 CVLLSNLSSTSHVPEVDPGSAELQK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 149.07 1.9986e-07 309570000.0 207960.0 208430.0 192040.0 199840.0 228370.0 274460.0 284030.0 257270.0 288800.0 278220.0 False True 206840.3664665283 215367.4665514045 219077.562758397 225139.72350994335 257451.5658449616 255487.22620934536 270290.38380003267 276468.79379058955 217629.109721734 260463.76140387394 0.7941233949463034 0.8268615387821904 0.8411057322430981 0.8643802204823522 0.9884352604651145 0.9808935601340257 1.0377274072339053 1.0614482118374167 0.835544678264395 1.0 17.990723137229566 3.3315923023894567 2.2283728107972087 0.9984918550456817 0.8202728004180723 0.6231248238790282 0.05808945141983146 0.1874805782197032 1.9004602591248427 0.017825806105204626 0.025838820152123087 2145.81512625463 -3.3315923023894567 -0.17821905462760945 CVMDDDNEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 CVMDDDNEVR 10 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ; 157.96 1.9197e-05 238640000.0 309850.0 360610.0 318280.0 336760.0 353400.0 327570.0 350590.0 297520.0 346840.0 339080.0 False True 308181.8020275716 372612.6858566515 363091.0574606465 379393.7814712195 398403.39523409196 304925.85691683827 333630.6223161409 319722.4531759484 261365.9294178892 317439.62409900664 0.9708359594435898 1.173806473953097 1.1438113893034398 1.1951683175912844 1.2550525044404457 0.9605790637583875 1.0510049690963736 1.0071913803559374 0.8233563473990614 1.0 18.276122696885817 2.7196747656427793 24.825565250370502 0.9789378297607133 1.1516005636136453 0.5094004248446904 0.08764032842666386 653.2776534306406 858736.1994056741 0.028510973323292336 0.02692475457597709 524.4145896777744 -2.7196747656427793 0.17266273385293196 CVPAPGAGASGGTS(ph)PSATQPNPAVFIFEHK ddPTM_BT-474_Trastuzumab_2h_R1 2 CVPAPGAGASGGTSPSATQPNPAVFIFEHK 30 0 O60343-2;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 CVPAPGAGASGGT(0.004)S(0.967)PS(0.029)ATQPNPAVFIFEHK;CVPAPGAGAS(0.001)GGT(0.082)S(0.816)PS(0.082)AT(0.019)QPNPAVFIFEHK 202.61 1.2064e-25 600560000.0 468560.0 409030.0 429920.0 432070.0 447510.0 530550.0 527410.0 464580.0 603470.0 494050.0 True False 466037.3250219105 422644.316286144 490448.9990683712 486770.01769886474 504497.7459004198 493874.327280362 501897.16339814465 499249.31868943875 454752.9045837083 462519.3060225142 1.0076062100621266 0.9137874047263463 1.0603860048265692 1.052431782545246 1.0907604057415545 1.0677918107408073 1.0851377593602842 1.0794129286900225 0.9832084815970302 1.0 18.81915406086929 4.22083921022313 24.84555334451471 1.059820371071493 0.9606968243135071 0.44926847071432296 0.03993673261379016 145.70197440836264 204276.05088916447 0.009385656780683918 0.020346519222707995 16627.969155288356 -4.22083921022313 -0.09912354675798596 CVSSPHFQVAER ddPTM_BT-474_Trastuzumab_2h_R1 2 CVSSPHFQVAER 12 0 Q16537-2;Q16537;Q16537-3;H0YN84;E9PFR3;Q14738;H0Y8C4;Q14738-2;Q14738-3;H7C5Q9;H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5;Q96B13;Q13362-2;Q15173-2;Q15173 Q16537-2;E9PFR3;H0YJ75;Q15173-2 PPP2R5E;PPP2R5C;PPP2R5D;PPP2R5B Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform 0 ; 170.0 4.2309e-05 919660000.0 481660.0 574390.0 577210.0 604700.0 540350.0 636050.0 608960.0 527940.0 626150.0 601430.0 False True 479066.79607745627 593508.2239239129 658476.150800741 681254.9579987128 609160.3695946271 592081.36060065 579502.278346892 567337.5636249997 471843.72248013766 563046.2224898721 0.8508480777278877 1.0541021326798594 1.1694886218912257 1.209944993478696 1.0819011748286518 1.0515679476231636 1.0292268293431555 1.0076216498108284 0.838019515331399 1.0 19.10289383762977 1.627900608526154 2.050112479331816 0.9217521553771844 1.0774235651592832 0.2472553135660589 0.09735987556297913 0.3974902512008192 3.5703670954761075 0.07611298347783627 0.028483820534096586 42.45223977673403 -1.627900608526154 0.1556714097820988 CVVLADGFYEWQR ddPTM_BT-474_Trastuzumab_2h_R1 1 CVVLADGFYEWQR 13 0 D6R9T3;Q96FZ2;D6RAZ3 D6R9T3 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 0 95.81 0.0037211 0.0 26034.0 31429.0 31711.0 31288.0 27976.0 30142.0 27640.0 27224.0 30665.0 32680.0 False True 25893.835836649316 32475.09526576829 36175.63316304686 35249.057591969104 31538.577773256766 28058.35448663591 26302.947604946294 29255.59312067093 23108.021639948 30594.334421244388 0.8463604888449184 1.0614741546139967 1.182429160411049 1.1521433055753134 1.0308633402188578 0.9171094915911124 0.8597326303226195 0.9562421825511638 0.7553039501294734 1.0 14.90097689327957 2.7717393147710685 3.4830839245918988 0.8949390750098989 1.071098782574811 0.3697045174017577 0.10272512954759212 0.25586005537651996 6.519142072193019 0.03391948644670041 0.03473398337414513 591.2066558991415 -2.7717393147710685 0.17615970756491217 CWGESSEDCQSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 CWGESSEDCQSLTR 14 0 P04626-5;P04626-4;P04626;J3QLU9;P04626-6;F5H1T4 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 240.8 4.7971000000000005e-17 84392000.0 63766.0 76037.0 87840.0 79829.0 103480.0 122070.0 84407.0 57578.0 84174.0 86452.0 False True 63422.69094106859 78567.84557966283 100207.10848103308 89935.34321494833 116657.56462598685 113631.58822187135 80323.91094394735 61874.76273515981 63430.44557381327 80934.559344719 0.7836292858646043 0.970757686404694 1.2381250888662756 1.1112106366316632 1.441381352669325 1.40399341322028 0.9924550352072622 0.7645036092878555 0.783725099480042 1.0 16.304468249680948 2.002008228744022 24.976664076672378 0.8370522809563872 1.1668840071728446 0.34953712019596783 0.18967162447741304 68.94291934000707 857444.5843504351 0.0772474954677561 0.05666568329986347 100.46348252991932 -2.002008228744022 0.3298317262164574 CYECGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 CYECGEK 7 0 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ; 111.01 0.0363 0.0 164159.0 154039.0 131056.0 125279.0 132949.0 151555.0 164497.0 145087.0 211957.0 162443.0 False True 163275.1861837796 159166.09499645812 149507.5456408271 141139.30855485477 149879.26709953946 141078.3595720955 156539.65167043588 155914.1286768581 159723.03742828837 152075.74866555058 1.0736438098546477 1.0466237805378216 0.9831123433732255 0.9280855744149743 0.985556661168628 0.9276847939927565 1.029353154885349 1.025239921848085 1.050286050404762 1.0 17.21443058102002 -0.068692204217081 7.124767227064289 1.0000000013921497 1.0035264155767993 0.0 0.04720350688157709 0.0 0.0 0.048423845532108156 0.011413609867792131 0.8537049425366856 0.068692204217081 0.0035264141846496067 CYEMASHLR ddPTM_BT-474_Trastuzumab_2h_R1 15 CYEMASHLR 9 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 ;;;;;;;;;;;;;; 226.59 2.3104e-07 35219160000.0 18464900.0 19618390.0 21746170.0 19066530.0 14778680.0 18582390.0 21863320.0 16846110.0 26722600.0 18952550.0 False True 18365487.030043256 20271376.2515828 24807841.714901906 21480350.743064657 16660657.297900872 17297833.11754094 20805707.685606916 18103252.271013264 20137173.29449454 17742982.03290561 1.035084575748494 1.1425010865697833 1.3981776946453544 1.2106392658927252 0.9389998404440985 0.9749112683234922 1.1726161728068747 1.0203049429593913 1.1349373660610564 1.0 24.080745165537984 3.265277533028759 24.721003699836388 1.0459048541684433 1.2071348877782915 0.33819856020296346 0.10653751342326663 229.74257126982232 212577.6253563083 0.030491580766775914 0.04127381503634744 1841.9487106387837 -3.265277533028759 0.16123003360984822 CYPDRVDYVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 CYPDRVDYVDK 11 1 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ; 143.42 3.3918e-05 1392620000.0 2039980.0 1823310.0 1852570.0 1851490.0 1735590.0 2253200.0 2192000.0 1968460.0 2915500.0 2189100.0 False True 2028996.9743430843 1883997.771135831 2113395.7531728987 2085888.444162452 1956607.098852113 2097441.5874622813 2085964.5857468275 2115356.4808373437 2197014.0906984615 2049389.7638171997 0.9900493357417128 0.9192969558053666 1.0312317307745702 1.0178095357894583 0.9547266866443845 1.0234468935550747 1.0178466890853908 1.032188468091728 1.0720333093721988 1.0 20.966762959164413 2.584196194154828 6.366633405176541 1.0311497904424587 0.9838360166254846 0.3248326537370364 0.03358240877982749 0.30061185554736214 15.417415863140613 0.011078679275853263 0.01040224197240217 383.8806258337121 -2.584196194154828 -0.0473137738169741 CYQSEFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 CYQSEFGR 8 0 P20073-2;P20073 P20073-2 ANXA7 Annexin A7 0 ; 122.19 0.0032597 863160000.0 617440.0 679260.0 477140.0 597990.0 745470.0 660050.0 517900.0 971270.0 1069300.0 663230.0 False True 614115.7716440337 701868.758478659 544317.164624773 673695.4726867042 840401.1857531368 614422.2970905725 492847.1984298734 1043751.0994091245 805785.3428859095 620902.0935802292 0.9890702221713179 1.1304016619295998 0.8766553861755333 1.0850268982055757 1.353516431080523 0.9895638997570566 0.7937599237071837 1.6810236431812857 1.2977655434202378 1.0 19.24400627067313 1.7434105247811373 24.99999999999997 1.3854863161298188 1.0418885449820676 0.2783386458738224 0.21091276345314564 0.9694872269671801 5018.392088072239 0.09466961546072826 0.05249927443676534 55.38734207962691 -1.7434105247811373 -0.34359777114775114 CYYSNTDAVIYVVDSCDRDR ddPTM_BT-474_Trastuzumab_2h_R1 2 CYYSNTDAVIYVVDSCDRDR 20 1 B4DZG7;F8VYN9;P40616-2;P40616 B4DZG7 ARL1 ADP-ribosylation factor-like protein 1 0 ; 136.49 4.8274e-06 623310000.0 546900.0 514170.0 495260.0 479480.0 481320.0 575270.0 622050.0 501880.0 854820.0 620930.0 False True 543955.5511663023 531283.8376276718 564988.3031229102 540182.118837808 542613.2489928497 535502.9389399192 591959.0650382357 539332.8340950009 644161.065001152 581301.7157950818 0.9357542501354931 0.913955392168424 0.9719364105955567 0.9292629011063007 0.9334451185142031 0.9212134153216445 1.0183335933020208 0.9278018960555148 1.1081354957297753 1.0 19.14892764133347 1.2507556721055617 24.99966318101109 1.054067756769105 0.9451289089492858 0.5764447268810473 0.037741641520022545 125.69437815469405 257674.85735178902 0.023897888855678524 0.008584281950274962 17.81376308532164 -1.2507556721055617 -0.10893884781981922 DAAAVGNHVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAAAVGNHVAK 11 0 Q13564-2;Q13564;Q13564-4;Q13564-3 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 ; 120.96 0.00042157 509220000.0 760570.0 895100.0 815470.0 916090.0 834000.0 994110.0 987820.0 848510.0 1039910.0 1055320.0 False True 756475.1756272708 924892.8624006235 930281.0878076956 1032066.900071176 940204.9564947156 925389.515583228 940035.3727611445 911830.1248464764 783638.1145800852 987968.5740950925 0.7656874879043063 0.9361561558248532 0.9416099987388421 1.0446353529174492 0.9516547197423513 0.9366588572220707 0.9514830708275804 0.9229343409851336 0.7931812156047988 1.0 19.914105626855847 4.739039497541904 5.322672167156923 0.9429167964682267 0.7584435390998546 0.43356784680121296 0.060511080802777256 0.14729508184051746 15.012761917410904 0.014481200823486959 0.09944487201433849 54832.68310326251 -4.739039497541904 -0.18447325736837206 DAADAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAADAVR 7 0 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 85.35700000000001 0.048554 631590000.0 743260.0 831580.0 775140.0 780010.0 782300.0 693640.0 856610.0 799440.0 964200.0 884840.0 False True 739258.3707439499 859258.6375992739 884272.9743623405 878759.1860237723 881921.2679446238 645690.2994529268 815172.5017320215 859098.2722740656 726585.829618062 828368.7536503624 0.8924266728872488 1.0372900158447425 1.067487119070614 1.0608309187802596 1.064648158272837 0.7794720607308899 0.9840695923642833 1.037096424132716 0.8771284846467533 1.0 19.659913610076533 DAADKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DAADKPR 7 1 Q13185 Q13185 CBX3 Chromobox protein homolog 3 0 ;; 96.492 0.011575 984960000.0 2439500.0 2237010.0 1881610.0 1868130.0 1902950.0 1549530.0 2146920.0 2321700.0 3347190.0 2724200.0 False True 2426366.003053932 2311467.525548901 2146524.332752693 2104635.0664563146 2145279.4028316736 1442414.6383012729 2043065.2775691492 2494957.043353717 2522319.874548099 2550339.2236950416 0.9513895173280157 0.9063372841044836 0.8416622827306541 0.8252373044739627 0.8411741398555993 0.5655775611729957 0.8010955007816835 0.978284386709512 0.989013481466851 1.0 21.282257723778326 1.6927807972838647 5.143540125456288 0.990228793446548 0.8145263882028871 0.3996788566002003 0.0954591375558136 0.16824288805468282 10.34484922090774 0.05494072449458481 0.027068299897769935 49.29249457162019 -1.6927807972838647 -0.17570240524366088 DAAEAIKK ddPTM_BT-474_Trastuzumab_2h_R1 4 DAAEAIKK 8 1 O75874;C9J4N6;C9JLU6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;; 116.52 0.0036163 4425940000.0 5111030.0 4562970.0 4117290.0 3900980.0 4170240.0 5060960.0 5414540.0 5180880.0 7827790.0 5094460.0 False True 5083512.7823688155 4714845.69807639 4696968.6438737735 4394843.668023506 4701295.345050988 4711107.747418382 5152618.014648552 5567503.573575572 5898736.041512101 4769327.201213357 1.0658762898623368 0.9885766899945329 0.9848283511936076 0.9214808467964666 0.9857355443876735 0.9877929419939644 1.0803658036583614 1.1673561780703896 1.2368067428905722 1.0 22.185354332005048 2.0647712571274957 2.921381669807647 1.1504220015534794 0.9850513807607432 0.5110977023803148 0.06416852526075177 0.1832091183782078 3.0867480685512083 0.028645384037944206 0.01789894857479757 116.08370400107269 -2.0647712571274957 -0.16537062079273623 DAAEFELFFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAAEFELFFR 10 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2;C9J8U2;G5E977;H0YF31 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 0 ;;; 159.58 1.7771e-05 869339000.0 986250.0 1140780.0 997200.0 1041860.0 953130.0 1151870.0 1116910.0 951600.0 1276140.0 1140800.0 False True 980940.1395826754 1178750.1726839286 1137597.092182218 1173759.3691756863 1074505.455855886 1072243.938110322 1062880.7962894575 1022613.2241268904 961652.3963999106 1067993.1673119818 0.9184891529330576 1.1037057246824058 1.0651726312495253 1.0990326577930325 1.0060976874602063 1.0039801479339412 0.9952131051218318 0.9575091446518262 0.900429352764757 1.0 20.026470986465135 2.3174726169075033 1.2486653018119187 0.9494394016746891 1.0485074782886297 0.31153012610957864 0.05441180161597059 0.4975776719093033 1.5275128439684726 0.03216982566113236 0.019855641841812818 207.71727517536954 -2.3174726169075033 0.09906807661394057 DAALATALGDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAALATALGDKK 12 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 ; 119.88 0.0007532 1689590000.0 1654720.0 1545340.0 1416040.0 1380070.0 1419220.0 1839710.0 1787670.0 1638400.0 2751300.0 1783950.0 False True 1645811.1713766747 1596775.707722243 1615406.1235596775 1554786.720498233 1599949.254624017 1712535.1779115184 1701193.5725374233 1760665.727626623 2073278.98053119 1670096.7836835661 0.9854585599205052 0.9560977084216603 0.9672529995517608 0.9309560593662093 0.9579979257819827 1.0254107394508898 1.0186197525542622 1.0542297577169737 1.2414124742868884 1.0 20.67150027998423 1.9471831560650295 1.3772894423217432 1.1135376595611808 0.9621310144865268 0.4922087526290617 0.059648416772327274 0.3321047113521221 1.1698580223745032 0.04106941630426086 0.018564534363798988 88.54889705070177 -1.9471831560650295 -0.15140664507465396 DAALAVAEAMADKAELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAALAVAEAMADKAELEK 18 1 P46060;H0Y4Q3 P46060 RANGAP1 Ran GTPase-activating protein 1 0 ; 193.8 9.5858e-15 365450000.0 385000.0 317340.0 279950.0 288710.0 268200.0 396630.0 423690.0 397770.0 664480.0 435120.0 False True 382927.2027775217 327902.47006391885 319364.52663097926 325260.6563978966 302353.68025405565 369211.9016665916 403194.49604702275 427453.61723513296 500727.8075758244 407350.2690750259 0.9400440648953985 0.8049644125889251 0.7840047027737659 0.7984790513001723 0.7422449503730856 0.9063745127871512 0.9897980353923916 1.0493515033284644 1.229231562097238 1.0 18.6359103355992 2.113097550142187 1.6191241433058796 1.1049251250226264 0.8117695731800778 0.7346076095184173 0.07323815268209034 0.18632999626821262 0.9342994577678687 0.04301952493729456 0.02323780949578227 129.74706728787905 -2.113097550142187 -0.2931555518425486 DAASVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DAASVEK 7 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 89.046 0.04225 269400000.0 341010.0 397660.0 356190.0 356010.0 339500.0 252650.0 367340.0 367300.0 464330.0 372380.0 False True 339174.0400497727 410895.87270945346 406338.45594101906 401080.8294974721 382733.3126258459 235184.90017412827 349570.3608249269 394709.7911116085 349902.09320323047 348614.3895894422 0.9729203675419502 1.1786543670597167 1.1655814219819143 1.1504999262073456 1.0978700938781818 0.6746276321270098 1.0027422024564463 1.1322246094788346 1.003693776425307 1.0 18.411272594562707 2.9738818913581397 24.964694043875188 0.9773518694621783 1.124723454814252 0.2759449662706126 0.12073340586611846 1088.4904656906517 1040421.924518444 0.039423884266837565 0.04195127455713646 941.6334795787752 -2.9738818913581397 0.14737158535207362 DADAGDEDEESEEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DADAGDEDEESEEPR 15 0 Q9NZT2-2;Q9NZT2;A0A087X028 Q9NZT2-2 OGFR Opioid growth factor receptor 0 ; 322.24 2.3504999999999993e-56 402130000.0 416650.0 403610.0 350470.0 340670.0 366630.0 428140.0 408410.0 342290.0 504490.0 408320.0 False True 414406.80269416724 417043.9148626023 399813.1296601511 383798.7870703179 413318.1573137379 398543.6895331534 388653.6480222912 367833.4179134019 380165.19931966 382260.66801966017 1.0840948006527675 1.0909935281156187 1.0459175194022006 1.004023743951022 1.0812468869867626 1.042596643797671 1.0167241375780316 0.9622580837808921 0.9945182204832741 1.0 18.544197238898754 2.1244432474276156 2.5951880999835906 0.9823240913603911 1.0587085373558685 0.6258146299480676 0.0253940351961341 0.18411181719506522 2.4647017407441143 0.01241753608716412 0.00792343638855995 133.18129927795007 -2.1244432474276156 0.07638444599547733 DADDAVYELDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DADDAVYELDGK 12 0 Q13243;Q13243-3;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ;;; 261.87 5.112e-21 3121970000.0 4527810.0 3828040.0 3336100.0 2980630.0 3006630.0 4339900.0 4156330.0 3868250.0 5843300.0 4011370.0 False True 4503432.7740469845 3955453.9973009527 3805793.882098981 3357977.452389117 3389506.5088078035 4039892.9280257165 3955272.439177516 4156918.4575754916 4403297.011208478 3755360.9322933597 1.1992010502428019 1.0532819797125061 1.0134295879184168 0.89418234703167 0.9025780930031317 1.0757668838927277 1.0532336333280414 1.1069291427700148 1.1725362995986197 1.0 21.840520142897446 2.5070211433575693 24.27412734913448 1.0888148792882877 1.006362893692116 0.12843415058701724 0.08904221691647092 936.9996111798963 760698.9400119813 0.030630337650117617 0.02883463745542846 321.3816997519548 -2.5070211433575693 -0.08245198559617162 DADDAVYELNGK ddPTM_BT-474_Trastuzumab_2h_R1 5 DADDAVYELNGK 12 0 Q08170;A0A0D9SEM4;Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q08170;Q13247 SRSF4;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 0 ;;;; 276.0 1.7701000000000004e-27 2475520000.0 4795520.0 4076870.0 3670560.0 3280760.0 3494890.0 4587160.0 4410350.0 4379490.0 6265180.0 4537690.0 False True 4769701.453152355 4212566.153430043 4187342.9429205433 3696103.879616102 3939943.52566405 4270060.426213156 4197004.521326874 4706309.7823996125 4721210.338110854 4248090.7392881345 1.1227870932793749 0.9916375171722334 0.9856999767434885 0.8700623660019724 0.9274621865361281 1.0051716614058728 0.987974311026647 1.1078647023411423 1.1113722911912192 1.0 22.018383151785187 1.7881104790424132 6.940922376996784 1.082305827735378 0.9786253262892162 0.26515471981895056 0.06667465202309403 0.25987497261271847 27.029001903939058 0.03177006774778115 0.018243655623631377 61.391815834400134 -1.7881104790424132 -0.10368050144616192 DADISDVAFLVVGDPFGATTHSDLVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DADISDVAFLVVGDPFGATTHSDLVLR 27 0 Q9H2P9-6;Q9H2P9-4;Q9H2P9;Q9H2P9-5 Q9H2P9-6 DPH5 Diphthine synthase 0 ; 165.85 9.3157e-12 127139000.0 32860.0 38980.7 40480.2 36208.1 41568.8 46538.4 53962.6 47041.1 47171.4 41209.2 False True 32683.085411089225 40278.14903516924 46179.460299794046 40792.04174749988 46862.34028241907 43321.30994760988 51352.22288084935 50551.545751865735 35546.640534376085 38579.193575028876 0.8471687037088297 1.044038127879377 1.1970042922225463 1.0573585906653922 1.2147050246470579 1.1229190123779682 1.3310859590929363 1.3103318412696474 0.9213940790453519 1.0 15.23553536644434 5.233289395471956 1.047791358340349 1.1779397134252874 0.25068880965383666 0.3131827395506751 0.1260385539659786 4.664544005794122 2.034434282775587 0.037224380864384156 6.181173372146727 171115.5176697713 -5.233289395471956 -0.9272509037714507 DADLWSSHDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DADLWSSHDK 10 0 P34896-2;P34896;P34896-3;J3KRZ5;J3KRK5 P34896-2 SHMT1 Serine hydroxymethyltransferase, cytosolic 0 119.53 0.00068036 523860000.0 249250.0 306100.0 329810.0 367650.0 304530.0 420060.0 379130.0 301860.0 394160.0 359210.0 False True 247908.0656942783 316288.3534586427 376244.38124009006 414194.45230399625 343310.09040927544 391022.24091487954 360790.0334827533 324386.3260140218 297024.54947340273 336284.9102648469 0.7371965203524419 0.9405368596811092 1.118826238571848 1.2316771869953675 1.0208905601470364 1.1627707012096478 1.0728701243199017 0.9646175493231196 0.8832526836826428 1.0 18.359324518319166 4.605717233087248 2.970268881798996 1.0594131256884367 0.724505198771786 0.5138861287943361 0.0950262898296749 0.2568517708840242 3.647296362579278 0.02508303616875676 0.17103739134280802 40338.2667058705 -4.605717233087248 -0.3349079269166507 DADNLFEHELGALNMAALLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DADNLFEHELGALNMAALLR 20 0 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 0 ;; 198.9 1.5097e-21 208551000.0 129646.0 146664.0 139600.0 131085.0 141213.0 141631.0 146386.0 140331.0 178471.0 152989.0 False True 128948.00034102479 151545.62257973963 159254.46657504782 147680.34755955197 159195.63851497392 131840.38233351248 139304.74993117462 150803.21180637914 134489.21343887673 143225.11103952755 0.9003169863519077 1.0580939437213337 1.1119172149295555 1.031106532141524 1.111506476479804 0.9205116433606877 0.9726279764777352 1.052910419910655 0.9390058242074613 1.0 17.1279249306996 2.73887836484082 24.999999921068117 0.9859103136283293 1.0466633949833426 0.19804820643598198 0.06449310565657548 53.75452811472226 4229536.509016705 0.020484409031178704 0.020521324566293665 548.1234275850679 -2.73887836484082 0.06075308135501334 DADPILISLR ddPTM_BT-474_Trastuzumab_2h_R1 7 DADPILISLR 10 0 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ;;;;;; 213.53 4.7739e-08 1369098000.0 1601604.0 1838536.0 1754396.0 1621235.0 1430483.0 1697592.0 1819806.0 1505429.0 2100035.0 1668660.0 False True 1592981.1420189308 1899730.5593415191 2001399.7073166026 1826483.1847710323 1612646.530912984 1580241.4607417302 1731775.0314459798 1617771.7563935693 1582509.5132772936 1562164.6901882978 1.0197267625008977 1.2160885284844918 1.2811707497212481 1.1692001465932984 1.0323153128743432 1.0115716164031678 1.1085739181809555 1.0355961612463336 1.0130234815937003 1.0 20.575115126000743 3.263489223902217 6.243993008635896 1.0392039855541446 1.183632041468341 0.49793989814855366 0.06738720247812736 0.14065893816986777 17.701219546953688 0.019116004608463508 0.025265447646632102 1834.3796503070112 -3.263489223902217 0.14442805591419638 DADSTEFRPNAPVPLVIDMPEHNPGNLGGTMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DADSTEFRPNAPVPLVIDMPEHNPGNLGGTMR 32 1 Q9NRF8;H0Y5S6 Q9NRF8 CTPS2 CTP synthase 2 0 ; 205.42 3.0137e-27 720930000.0 291041.0 321134.0 283756.0 282736.0 287014.0 341120.0 305802.0 292607.0 381511.0 344283.0 False True 289474.06759369496 331822.75106039795 323706.37834863365 318530.3486104246 323563.5316347409 317539.17731010704 291009.18898291583 314442.82016823994 287492.7260354867 322310.5641844942 0.8981215627421902 1.029512488676787 1.0043306497497875 0.9882715120317752 1.0038874538705143 0.9851963062816149 0.9028844267615718 0.9755895558801768 0.8919742570737539 1.0 18.298091949979188 2.3879537352195506 11.53960042613116 0.9430074440357081 0.9891762563679399 0.18168622201077134 0.04346144860745338 0.7138315737876693 87.97303248767905 0.014060175725959363 0.011760156322804992 244.3170271337111 -2.3879537352195506 0.0461688123322318 DADVQFLASVLPPDTDPAFFEHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DADVQFLASVLPPDTDPAFFEHLR 24 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2;C9J8U2;G5E977;H0YF31;H0YDA6 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 0 ;;; 173.89 3.6048e-12 1935220000.0 1425990.0 1600970.0 1428110.0 1432190.0 1447150.0 1622560.0 1689740.0 1408450.0 1911550.0 1683000.0 False True 1418312.628282382 1654257.318643197 1629175.4746453576 1613505.1071542494 1631435.9745699356 1510396.2462954016 1608000.8207663505 1513555.6909641845 1440474.115957692 1575589.4991112084 0.9001790308214503 1.049929134191593 1.0340101121290648 1.024064394986403 1.0354448131891145 0.9586229453467529 1.020570917534945 0.9606281914280228 0.9142445521312912 1.0 20.58746027623856 1.635101794987554 5.242816676793491 0.9511646616649089 1.0064451153717564 0.16062182219115118 0.04621194181980155 0.22016750111136477 13.12835966970408 0.02412795523940218 0.011479980066816137 43.162023313825756 -1.635101794987554 0.05528045370684753 DAEAHPWLSDYDDLTSATYDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DAEAHPWLSDYDDLTSATYDK 21 0 J3KPV0;B4E0T2;P50542-2;P50542-3;P50542;P50542-4 J3KPV0 PEX5 Peroxisomal targeting signal 1 receptor 0 207.82 3.4619e-22 87768000.0 97345.0 78068.0 78725.0 93262.0 83130.0 110670.0 100880.0 100130.0 135300.0 112530.0 False True 96820.90533604629 80666.44618689734 89808.79571003318 105068.95963763162 93716.1127498868 103019.64338915792 96000.04900097629 107602.2090498376 101957.12792711453 105348.23905822005 0.919055754529877 0.7657123356596168 0.8524945126078559 0.9973489882404766 0.8895840460901788 0.9778962069999553 0.9112639172632251 1.0213954216204024 0.9678104621261734 1.0 16.684806673516512 3.808561836949218 5.920263647208492 0.9646642532051883 0.8356694063023966 0.5369575034132125 0.051200206338284406 0.15848146676821387 10.290048193941427 0.012614853902188987 0.022991083932004566 6435.196859153112 -3.808561836949218 -0.12899484690279173 DAEDAIYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAEDAIYGR 9 0 Q13242;H0YIB4;S4R3G0 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 ;;; 215.27 1.5019e-06 4542510000.0 5197750.0 5588990.0 4915930.0 4941110.0 4973560.0 5824300.0 5724860.0 5107070.0 6614070.0 5589860.0 False True 5169765.891524308 5775016.153534198 5608050.213970458 5566654.019376584 5606913.385400299 5421679.849927465 5447926.650711031 5488185.496575993 4984121.07249734 5233110.349080076 0.9878954477680939 1.1035532920778908 1.0716476129643038 1.0637371750349467 1.0714303753189407 1.036033924046822 1.0410494500022758 1.0487425508886423 0.9524204039331015 1.0 22.31923725028943 1.2974458604012429 6.921234513156166 0.9765761101671636 1.0551280690829308 0.5051927601144618 0.03034941795789962 0.141258759158733 13.01119646977303 0.019999068152461223 0.007137020879226367 19.835623684892628 -1.2974458604012429 0.07855195891576716 DAEDALHNLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 DAEDALHNLDR 11 0 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 0 ;;;; 203.51 3.6353e-08 9430320000.0 6991780.0 7371950.0 6382830.0 6540810.0 6360320.0 7015110.0 7247010.0 6480800.0 8491900.0 7108280.0 False True 6954137.033339777 7617320.899312111 7281476.983447084 7368875.875355637 7170269.051429821 6530171.957492686 6896444.440033346 6964430.204835594 6399185.030630178 6654623.484695309 1.0450083388389 1.1446659479429406 1.094198191707382 1.1073317509702851 1.077486813178901 0.9812984870610871 1.036338788497079 1.0465551087680312 0.9616148900606318 1.0 22.665925610798755 2.906423654537544 4.862022539626813 1.0140963148287179 1.1001230491495757 0.6446821363649825 0.03276290155658259 0.14828340461497613 5.765398258291268 0.009934142734124345 0.010673323741507916 806.1644716942744 -2.906423654537544 0.08602673432085783 DAEDALHNLDRK ddPTM_BT-474_Trastuzumab_2h_R1 5 DAEDALHNLDRK 12 1 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 0 ;;;; 204.85 7.051700000000001e-08 3353410000.0 3495400.0 3450460.0 2981760.0 2990990.0 2896300.0 3615590.0 3779410.0 3189700.0 5653640.0 3836790.0 False True 3476581.1547754505 3565306.4752528807 3401565.8900774727 3369649.0273268847 3265126.6372849457 3365652.7734833797 3596585.499551742 3427731.6109684133 4260376.176894693 3591922.777358822 0.9678886129427917 0.9925899570353479 0.9470041815817319 0.938118449696912 0.9090191631808485 0.9370058829489032 1.0012981131505139 0.9542887816449271 1.1860990452660543 1.0 21.776324903278777 1.2666426101624308 24.850377742929034 1.0930494889783806 0.9562111198111287 0.5581811286371949 0.04880654336786394 113.3305260086206 100288.90800116891 0.03038108338334678 0.011089112531426606 18.47747443887568 -1.2666426101624308 -0.1368383691672519 DAEDAMDAMDGAVLDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAEDAMDAMDGAVLDGR 17 0 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 0 ;;; 340.52 4.0063999999999996e-72 3667150000.0 1478810.0 1638140.0 1311640.0 1403600.0 1396120.0 1594980.0 1567510.0 1418870.0 1971510.0 1533550.0 False True 1470848.2512712372 1692664.4996234593 1496307.5110207421 1581295.616085651 1573907.606548443 1484722.7867790633 1491683.5528302966 1524753.2842758729 1485657.7773805284 1435677.5260617908 1.0244976497653504 1.1790004850647833 1.0422309215393692 1.1014281322793327 1.0962821232326672 1.0341617527801028 1.0390101716798033 1.0620444052352243 1.0348130066894887 1.0 20.453300304699326 2.739634088559254 24.99999865881906 1.0402063477068357 1.0918320834210744 0.30016891790967926 0.04106692833256466 120.81327853426212 2813654.3971953173 0.011901582271233098 0.012042087293997352 549.0780574634946 -2.739634088559254 0.051625735714238674 DAEDAVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAEDAVR 7 0 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ;;; 131.3 0.0080945 1832301000.0 2464210.0 2553490.0 2269450.0 2214470.0 2368480.0 2282540.0 2464430.0 2399570.0 3010500.0 2659210.0 False True 2450942.967159469 2638481.3710327 2588968.833586981 2494821.6749452767 2670091.888919187 2124753.38232121 2345216.1058631646 2578638.098169567 2268602.613633247 2489496.9411357758 0.9845133475204363 1.0598451950011047 1.0399566236887294 1.0021388794344417 1.07254274741186 0.8534870427885886 0.9420441805376205 1.035806895586352 0.9112694923008218 1.0 21.247422812078625 2.7816977926654984 24.999860196098737 0.9572446125382482 1.0321628338844457 0.3880567728218045 0.05171071468285712 564.0104287350355 326867.5188851453 0.01613602805688716 0.017114757299014433 604.9197899255231 -2.7816977926654984 0.07491822134619752 DAEDAVYGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DAEDAVYGR 9 0 J3KTL2;Q07955;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;;; 233.89 8.5674e-10 8720990000.0 11563090.0 11712360.0 10254960.0 9600570.0 9809840.0 11679780.0 11259160.0 10859550.0 13669540.0 11360610.0 False True 11500835.608220072 12102198.822328862 11698769.230289765 10816001.17763137 11059064.976522913 10872384.299844757 10714511.416631956 11669944.764677547 10300865.029451637 10635566.143492451 1.0813562205390497 1.1378988818318614 1.0999667598746357 1.0169652495884596 1.0398191151572675 1.0222666243768515 1.0074227617105094 1.0972565641762284 0.9685300143382017 1.0 23.34239349588057 3.7989205300421642 5.370032088399168 1.0297438485944623 1.111059000475046 0.5555706174169422 0.03417037963134779 0.1646309841648234 9.908778468929304 0.008739977305671555 0.0159337338359171 6293.910023631795 -3.7989205300421642 0.08131515188058369 DAEDVDLNHYR ddPTM_BT-474_Trastuzumab_2h_R1 5 DAEDVDLNHYR 11 0 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C003;H7C118;C9J177;Q15435-2;Q15435-5;Q15435-4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 0 ;;;; 227.37 4.0508e-12 2726040000.0 3358390.0 3572730.0 3272420.0 3161270.0 3334120.0 3676050.0 3485100.0 3196760.0 3974680.0 3780840.0 False True 3340308.8013922046 3691646.1582891117 3733148.291615457 3561486.4578676885 3758700.4191224948 3421933.3159909067 3316512.398625124 3435318.464018363 2995173.371983321 3539543.5542600197 0.9437117385861727 1.042972378132211 1.0546976564598065 1.0061993596833296 1.0619167023947789 0.9667724845121447 0.9369887240498943 0.9705540873720239 0.8462032818831904 1.0 21.755131897298195 2.539230800040255 5.015303991627406 0.9407735765431653 1.0238344090980827 0.40686293290573483 0.047839192191505134 0.20826041817242827 10.571472800214453 0.015284246169719042 0.014102766277729332 346.12327157821625 -2.539230800040255 0.08306083255491736 DAEGILEDLQSYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAEGILEDLQSYR 13 0 E5RI16;Q9NUQ9;E5RGI7;E5RJE1;E5RIR8;E5RJL8;E5RK61;E5RFS4;E5RHU5 E5RI16 FAM49B Protein FAM49B 0 ; 218.75 5.4937e-11 141664000.0 158977.0 177937.0 162007.0 161199.0 150497.0 185640.0 177898.0 151250.0 197317.0 192469.0 False True 158121.08549600502 183859.52547981206 184816.1774099127 181606.77687189408 169661.90088439482 172807.1437495553 169292.39410364468 162537.04303193776 148690.86926233894 180185.4636389989 0.8775462920405178 1.0203904453034798 1.0256997078309904 1.0078880571395192 0.9415959393056923 0.9590515253537543 0.9395452368056812 0.9020541377165714 0.8252101266073312 1.0 17.459123101671285 2.271675236099396 1.3913693407244168 0.9007307343906734 0.9831098420595769 0.1917043236767344 0.05680341204307682 0.5706553392049705 2.174808622329505 0.03244722101362159 0.0196110297699043 186.9283773690209 -2.271675236099396 0.08237910766890344 DAEGLQELALAPCHEWLSDEDLVPVLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAEGLQELALAPCHEWLSDEDLVPVLAR 28 0 X6RJB2;X6RGT4;X6RHD7;A0A0C4DFV0;Q9H469 X6RJB2 FBXL15 F-box/LRR-repeat protein 15 0 ; 104.38 0.0010067 50397000.0 28120.8 29586.9 23989.5 30785.8 26987.4 31339.0 31415.0 29990.0 34391.0 34584.0 False True 27969.40073731458 30571.68208084126 27367.01307952801 34683.27912346083 30424.08542314806 29172.608694070823 29895.33643304588 32228.006086134304 25915.79886579005 32376.819511147973 0.8638711633699588 0.9442459927330055 0.8452656404408411 1.0712379920924195 0.9396872788160199 0.9010337993213361 0.923356181503632 0.9954037046485549 0.800443010063627 1.0 14.982673651142427 5.234849089482945 1.1360118270038428 0.9415414135526509 0.7318363081018612 0.07613128347908427 0.07359147050087078 11.784223393755857 5.82024924502975 0.020124467340033588 3.8652014871615483 171731.1544654986 -5.234849089482945 -0.20970510545078969 DAELAWIDGVLDMR ddPTM_BT-474_Trastuzumab_2h_R1 5 DAELAWIDGVLDMR 14 0 Q9P2I0;H0YJF4 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 0 ;;;; 188.96 1.7985e-06 117015000.0 245535.0 267934.0 243817.0 249130.0 249724.0 288774.0 285736.0 248565.0 318460.0 280680.0 False True 244213.06684150296 276852.02122047683 278144.3143046449 280669.8324561254 281524.87116988737 268811.7330808776 271913.8580624796 267114.18248749484 239979.80014537217 262766.76209776255 0.9293910116023096 1.053603655996164 1.0585216793939909 1.0681329336154852 1.0713869171365968 1.0230050822823094 1.0348107039554488 1.016544788066136 0.9132806532665175 1.0 18.00342327220747 1.4165365076908691 5.2223947086259574 0.9567931957334286 1.0370575610482824 0.33200651205011567 0.043024718566031774 0.21095423154116638 9.754062099408527 0.02863512363673975 0.01057998580818266 26.093750632504985 -1.4165365076908691 0.08026436531485381 DAELIQAGHMDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAELIQAGHMDSR 13 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9;H7C2P4 H7C128 BRD8 Bromodomain-containing protein 8 0 65.956 0.069216 0.0 27651.0 34018.0 30419.0 29384.0 27095.0 30020.0 29514.0 29353.0 38663.0 32788.0 False True 27502.130088314916 35150.268565684746 34701.73079331218 33104.01138719061 30545.387645352883 27944.78805947882 28086.2950655711 31543.469911513854 29135.021707657233 30695.441768780922 0.8959678865507062 1.1451299131141564 1.1305173926053702 1.078466686896142 0.9951115177113804 0.9103888541490326 0.9149988873636776 1.0276271685262215 0.9491644370888082 1.0 14.905736812805342 3.1324782399649305 4.21728522466297 0.9629553304494421 1.0732246740305982 0.3079258950517343 0.0713114828424614 0.25220909501562433 8.068911053307584 0.021062038218576846 0.02570863725789101 1356.6825529233374 -3.1324782399649305 0.11026934358115603 DAELQDQEFGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAELQDQEFGKR 12 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ;;; 152.4 0.00010501 3421760000.0 3148830.0 2882460.0 2601450.0 2779270.0 2509520.0 3475410.0 3424790.0 3080020.0 4495870.0 3329190.0 False True 3131877.0491479025 2978400.9386161375 2967711.5477912496 3131125.2970350306 2829092.4969096114 3235163.0869351504 3259119.8237316976 3309866.7324246536 3387923.080071518 3116718.2439370453 1.0048637072793942 0.9556208503640081 0.9521911560547193 1.0046225073844937 0.9077151912634539 1.0380030640333036 1.045689590347689 1.061971751493206 1.087016154463769 1.0 21.57159630835939 2.5730277601870797 7.03634823757321 1.0529250422705565 0.9660920895108595 0.6060217766413089 0.032872488557125296 0.1603044801378129 10.180315285357555 0.010071209377738291 0.00946442041929452 374.13450225732487 -2.5730277601870797 -0.08683295275969705 DAELQDQEFGKRDS(ph)LGTYSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAELQDQEFGKRDSLGTYSSR 21 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 DAELQDQEFGKRDS(0.997)LGT(0.002)YSSR;DAELQDQEFGKRDS(0.999)LGT(0.001)YSSR 230.3 5.0693e-26 1187370000.0 642730.0 655960.0 598780.0 684700.0 701750.0 1028710.0 1033950.0 819570.0 1582190.0 1029620.0 True False 639269.6130940161 677793.2320638062 683083.0193109392 771382.9497961266 791113.7029018784 957597.6990228666 983933.8884274318 880730.4750921348 1192280.474759802 963908.770097969 0.6632055158384361 0.7031715584400349 0.7086594089620251 0.8002655165360985 0.8207350399161446 0.9934526261500235 1.0207749103967874 0.9137072951443526 1.2369225301670634 1.0 19.87853708234896 3.0110675953398753 0.7453517042153175 1.0567526146381803 0.6606298789528593 0.7980321992161185 0.07689266673311755 0.30698430616493616 0.38005393908354723 0.047266425279844426 0.06352487632171455 1025.8115752662181 -3.0110675953398753 -0.39612273568532097 DAENHEAQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DAENHEAQLK 10 0 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 0 123.51 0.00046005 398700000.0 678870.0 647410.0 594840.0 483510.0 652700.0 744330.0 701590.0 675310.0 1070000.0 780180.0 False True 675215.0393495469 668958.6504823909 678588.3015580334 544722.3164246026 735817.4761440057 692876.2190643529 667651.4113659285 725705.061354697 806312.8372654286 730388.2444542964 0.9244604420680789 0.9158946020307294 0.9290788929181564 0.7457983073530811 1.0074333503187276 0.948640978719516 0.9141048153982253 0.9935880908062829 1.1039510060404363 1.0 19.478304019873992 1.5779908190695642 3.1318781277181618 1.0526074679133768 0.9113122748136834 0.421349229098803 0.06658203388425078 0.19729004681738854 4.454759771621323 0.04403104090324247 0.017564701303580746 37.84345845732635 -1.5779908190695642 -0.1412951930996934 DAEQSGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAEQSGSPR 9 0 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5 P08651-3 NFIC Nuclear factor 1 C-type 1 DAEQS(0.01)GS(0.99)PR 90.434 0.011993 88002000.0 82419.0 91038.0 83145.0 84871.0 92314.0 77896.0 90047.0 81306.0 107300.0 115440.0 True False 81975.26526161176 94068.14479636682 94851.09329070465 95615.65989798044 104069.6407120542 72511.2328674604 85691.08259705504 87373.46658350248 80857.35274633681 108072.52036684357 0.7585208985906245 0.8704168689418919 0.8776615273590378 0.8847360973300215 0.9629611705066013 0.6709497717026196 0.7929035272443307 0.8084707036249381 0.7481768026865012 1.0 16.721640209625082 2.7529319511591943 24.99413137382026 0.7928907944896507 0.8719835557672048 0.11438306180575131 0.09019642180194526 1470.6059280630698 2557626.010890028 0.026098110875649682 0.02757217539360105 566.1505729475573 -2.7529319511591943 0.07909276127755405 DAESFLWAEHAVVGEIADGLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAESFLWAEHAVVGEIADGLAR 22 0 I3L428;Q8IYR2 I3L428 SMYD4 SET and MYND domain-containing protein 4 0 ; 104.63 0.00054502 24665000.0 17786.3 21779.3 19338.1 19698.0 20555.2 21818.3 20715.2 19623.5 23047.4 20759.0 False True 17690.5405370437 22504.210834635138 22060.736390221595 22191.76478031857 23172.782879784387 20310.05227575371 19713.12663625122 21087.905216113937 17367.677089337605 19434.142847325933 0.9102814914977253 1.157972904255545 1.1351535575059886 1.141895732405408 1.192374835454751 1.0450706488734234 1.0143553431256 1.0850957195169302 0.8936682839977855 1.0 14.24630585783719 1.7276447775549373 1.1432014901925944 0.9661835160255662 1.1079836136446433 0.26903044954712385 0.08378529941700313 0.6108107845344167 1.494325879829215 0.07004125407012567 0.027392183950827913 53.412730198589585 -1.7276447775549373 0.14180009761907708 DAESIHQYLLQR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAESIHQYLLQR 12 0 E9PLK3;P55786;P55786-2;H0YDG0 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ;;; 252.21 4.7103e-21 2549410000.0 2119970.0 2810060.0 2698550.0 2769530.0 2716870.0 3004970.0 2925560.0 2497440.0 3090400.0 3059230.0 False True 2108556.31707081 2903591.1483828607 3078482.383782922 3120152.2140336954 3062847.2903498732 2797243.4968385086 2784039.486075495 2683811.6545433598 2328812.329238393 2863987.3222614243 0.7362310233293489 1.013828212790469 1.0748938585915704 1.089443444732151 1.069434653757974 0.976695488522549 0.9720851291608366 0.9370892230152065 0.8131363959389131 1.0 21.449593675700417 1.7887732228626674 2.152714348750877 0.9024693550106111 1.0047941547371297 0.09334142649683641 0.10358043611702261 0.6070222494834047 5.516893504177015 0.06791842646143412 0.030140960849224362 61.485572740735385 -1.7887732228626674 0.10232479972651864 DAEVERDEER ddPTM_BT-474_Trastuzumab_2h_R1 2 DAEVERDEER 10 1 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;A1L2Z2 Q7Z406 MYH14 Myosin-14 0 ; 187.42 1.1242e-06 399460000.0 546530.0 638070.0 519240.0 520310.0 532830.0 615980.0 600710.0 539080.0 828620.0 609030.0 False True 543587.5432051917 659307.7742285402 592344.478685013 586181.1926514143 600682.7421691588 573398.752460952 571651.3623649534 579308.8869927744 624417.7039391393 570161.1839831847 0.9533927571281725 1.1563533133254904 1.03890705878442 1.0280973330318852 1.0535314557415998 1.0056783389832844 1.0026136089646758 1.016044064847914 1.0951599678829673 1.0 19.121010299785766 4.0149439966631375 24.99559827558791 1.0276292376935323 1.0655622961626956 0.029168276241361313 0.05297336355010968 589.228593528327 985538.8915289778 0.012211827946870438 0.02636575671697552 10350.086911684652 -4.0149439966631375 0.03793305846916328 DAEVIVDWRPLDDALDSSSILYAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAEVIVDWRPLDDALDSSSILYAR 24 1 Q8TC07-2;Q8TC07-3;Q8TC07;F8WCB5;F8WDJ1;F8WF35 Q8TC07-2 TBC1D15 TBC1 domain family member 15 0 ; 141.53 2.5264e-07 116382000.0 40316.0 44577.0 36915.0 38555.0 39677.0 50922.0 45171.0 44731.0 57848.0 46108.0 False True 40098.94313552871 46060.71849763445 42112.311129067995 43436.05904686681 44729.63076599615 47401.88199749431 42985.90616002279 48069.05435941559 43592.135523486446 43165.3479649552 0.9289614245223732 1.0670762699522294 0.9756045790076304 1.006271490783102 1.036239318684769 1.0981466438305707 0.9958429199950363 1.1136028463952514 1.0098872725149288 1.0 15.39758599795614 3.1919788944915304 3.590498669216298 1.0528097556895393 0.9975102702907429 0.1755321739439355 0.04871285125312141 0.3395503678141578 9.00486885083203 0.013435454241252191 0.01701696109727207 1555.8900178240008 -3.1919788944915304 -0.055299485398796366 DAFDRNPELQNLLLDDFFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DAFDRNPELQNLLLDDFFK 19 1 P52209-2;P52209 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 260.08 3.9159999999999995e-31 2362296000.0 2968417.0 2587350.0 2370761.0 1967727.0 2126458.0 2815899.0 2915007.0 2625767.0 3837710.0 2923207.0 False True 2952435.3726941347 2673468.3806638955 2704543.5417759796 2216841.036444405 2397249.821795971 2621242.5300432486 2773996.9750018734 2821715.0669146576 2891957.793179349 2736645.426576574 1.078851993035687 0.9769144203705958 0.9882696221845764 0.8100578229520871 0.8759811550723353 0.9578305265955884 1.0136486619941936 1.031085371715291 1.0567528277848783 1.0 21.383977093374103 2.2294455467135252 3.47875379131793 1.0301865920871158 0.9404604295179144 0.24024413020226698 0.06755239920662305 0.34492383353293177 8.852349542618937 0.028832425201995384 0.021512106164420012 169.60769291615074 -2.2294455467135252 -0.0897261625692014 DAFEHIVTQFSSVPVSVVSDSYDIYNACEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAFEHIVTQFSSVPVSVVSDSYDIYNACEK 30 0 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ; 336.72 1.469199999999999e-105 387850000.0 321770.0 312400.0 305820.0 269138.0 238201.0 373550.0 361300.0 314450.0 473320.0 365460.0 False True 320037.62607200805 322798.0451502123 348876.79776490753 303210.8432046592 268534.48542205966 347727.367742116 343822.5386999678 337915.8557447465 356676.62816305883 342136.02991395287 0.9354104744609839 0.943478666165022 1.019702011076267 0.8862289168460762 0.7848763706342066 1.0163424408401809 1.0049293515986581 0.987665215586129 1.0424994650600317 1.0 18.38421051493872 DAFLVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAFLVFR 7 0 Q9Y6D6;Q9Y6D5 Q9Y6D6;Q9Y6D5 ARFGEF1;ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 1;Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 122.78 0.010022 24327000.0 40617.0 53002.0 49167.0 47607.0 45216.0 54749.0 52418.0 44790.0 60027.0 51195.0 False True 40398.32258497292 54766.1395296144 56089.286232774946 53634.04131874431 50973.98958377105 50964.33049528333 49882.341083794316 48132.45723901152 45234.150170590525 47927.69126975538 0.8429014942029173 1.1426826137184372 1.1702897583170238 1.1190616509539635 1.0635602974670726 1.0633587628587529 1.0407833084017635 1.0042723937630051 0.9437998988099683 1.0 15.548571824953907 1.8254237697897433 1.5645114870928978 0.9721860911395646 1.0786251339466675 0.16207380774016567 0.08481078875668228 0.6236829837454761 2.899301404328664 0.061765194850949445 0.025964860567976818 66.89963831152487 -1.8254237697897433 0.10643904280710292 DAFMDHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DAFMDHLK 8 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 112.84 0.005460100000000001 0.0 253300.0 276560.0 305680.0 200820.0 138890.0 218660.0 268220.0 184100.0 491130.0 232890.0 False True 251936.26094427548 285765.1324159493 348717.0869818094 226243.79140946153 156576.81823447364 203544.5488702743 255245.17390009787 197838.47684085788 370097.5923048316 218026.76081283943 1.1555290736101196 1.3106883363793056 1.5994233262088335 1.0376881744515565 0.7181541277351902 0.9335759890732079 1.1707057103839094 0.9074045594370327 1.6974870007931468 1.0 17.734145698074354 3.6978862659250042 22.988031189272306 1.041205451343856 1.3507610512453425 0.19950372825311335 0.26164657413532244 280.51088097176427 158536.7042192845 0.06893328135222743 0.10679378882990277 4987.538555061225 -3.6978862659250042 0.3095555999014865 DAGADLDKPEPTCGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAGADLDKPEPTCGR 15 1 I3L4X3;G5E9C2;Q15653-2;Q15653 I3L4X3 NFKBIB NF-kappa-B inhibitor beta 0 70.98 0.031632 0.0 162580.0 143390.0 104870.0 115050.0 126760.0 155770.0 142120.0 145640.0 217030.0 149560.0 False True 161704.68734433613 148162.64946891472 119634.78445361934 129615.31820365776 142902.1346346163 145001.9865431384 135245.11264887743 156508.39634493485 163545.86455300535 140014.952755242 1.154910130398784 1.0581916184903164 0.8544429155559626 0.925724829049054 1.0206205253264722 1.0356178657333417 0.9659333520277462 1.1177977299219233 1.1680599916988679 1.0 17.095221380992054 1.704517262665496 7.19121532018954 1.1063722257752293 0.9978299395437239 0.19533432068442058 0.0850922360750142 0.18506306790531554 21.547779058655674 0.04383097406830169 0.022810521487678655 50.64274789862015 -1.704517262665496 -0.10854228623150541 DAGDPS(ph)PPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAGDPSPPNK 10 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;E9PMZ7;C9JMU2 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 DAGDPS(1)PPNK;DAGDPS(1)PPNK 75.73899999999998 0.039956 1876770000.0 3757200.0 3061300.0 2524500.0 2434970.0 2653800.0 3667500.0 3551200.0 3177900.0 5334800.0 3344200.0 True False 3736971.652664161 3163193.5199050694 2879927.6566526354 2743236.9523368995 2991745.6996950526 3413974.3573663714 3379414.8890986023 3415051.035049222 4020110.022657576 3130770.292886334 1.193626904265453 1.0103563097849775 0.9198783006202474 0.8762178939061805 0.9555941253476277 1.090458270005796 1.079419622952611 1.0908021718517082 1.2840641907814123 1.0 21.578086229997854 2.6326680114853738 4.359044482438925 1.1130100956035636 0.9821135760696355 0.24731418398413385 0.10254200020797555 0.3288855906165507 10.512287613729734 0.035044255543401286 0.032927584359716544 429.2082009280557 -2.6326680114853738 -0.1308965195339281 DAGHPLYPFNDPY ddPTM_BT-474_Trastuzumab_2h_R1 4 DAGHPLYPFNDPY 13 0 P14550 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] 0 ;;; 162.26 9.4799e-05 2220780000.0 2266560.0 2644720.0 2463470.0 2457580.0 2508090.0 2571060.0 2540280.0 2256110.0 3073260.0 2677640.0 False True 2254357.092798489 2732747.906432997 2810305.163134907 2768709.376018644 2827480.3948858865 2393328.6738242395 2417396.951588022 2424472.3844944453 2315896.252574159 2506750.72275706 0.8993144281689985 1.0901554277512575 1.1210947852221944 1.1045012776433818 1.1279463766449305 0.9547533594373225 0.9643547440286516 0.9671772954862777 0.923863801673511 1.0 21.257387107608956 2.7227472882996095 24.198838401213354 0.9608290402587658 1.074710464343673 0.4143096503462388 0.06313938411361343 509.1511232417007 779142.8625673844 0.020518999232277315 0.019410610985282482 528.1378441124565 -2.7227472882996095 0.11388142408490709 DAGNFDQNKLEEEMR ddPTM_BT-474_Trastuzumab_2h_R1 3 DAGNFDQNKLEEEMR 15 1 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ;; 230.93 2.3885e-13 1177020000.0 1221880.0 1126240.0 1017930.0 992320.0 998930.0 1351800.0 1327280.0 1213550.0 1708980.0 1293790.0 False True 1215301.5338436293 1163726.2175735433 1161245.6959938277 1117947.6102551385 1126137.8143780157 1258353.2477949178 1263074.3956980163 1304111.2632820385 1287824.7781587595 1211219.214530653 1.003370421525684 0.9607890987961966 0.9587411445118214 0.9229936223298296 0.9297555726230727 1.0389145356173441 1.0428123832129406 1.0766930111717068 1.0632466548656851 1.0 20.208028566557193 2.6541852768603995 5.2107520415743975 1.052529495768643 0.9540125366767418 0.7186459073360578 0.027736825135176203 0.11377055409108397 5.2353467338285675 0.009362611022681934 0.008829414726576267 451.00907107242165 -2.6541852768603995 -0.09851695909190128 DAGRPGERGS(ph)GGLFSPSTAHVPDGALGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAGRPGERGSGGLFSPSTAHVPDGALGQR 29 2 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 DAGRPGERGS(0.991)GGLFS(0.007)PS(0.002)TAHVPDGALGQR;DAGRPGERGS(0.984)GGLFS(0.016)PSTAHVPDGALGQR 152.85 1.3179e-08 2937600000.0 216542.0 332970.0 318380.0 358510.0 347550.0 385350.0 454580.0 348640.0 475380.0 422910.0 True False 215376.16193207772 344052.7051653843 363205.1365914304 403897.3292411417 391808.4324097585 358711.6615163275 432590.22873576346 374657.28715804825 358228.9687656442 395919.52172853297 0.5439897507245248 0.8689965669368741 0.9173711238226501 1.0201500736255151 0.9896163510684546 0.9060216580133236 1.0926216187752777 0.9462965744208405 0.9048024891565418 1.0 18.594847678977313 4.986152238814618 1.4181383648931825 0.9789758886313584 0.1254025671844616 0.8515494338103444 0.05396497061914573 0.7515552767690348 0.873676437251579 0.014167132195917805 1.0741262941616354 96861.7338614555 -4.986152238814618 -0.8535733214468968 DAGTIAGLNVLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DAGTIAGLNVLR 12 0 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;; 169.99 9.8503e-05 1559510000.0 767420.0 844290.0 829310.0 748760.0 788160.0 765830.0 826680.0 690990.0 1109620.0 873730.0 False True 763288.2959883781 872391.6822659173 946069.6395082589 843552.9392279085 888527.5042096827 712889.974669908 786690.3301757233 742555.1825761247 836169.0191462295 817967.8033621135 0.9331520053124526 1.0665354781448657 1.1566098758650465 1.0312789033512466 1.086262198288913 0.8715379404173349 0.9617619751561985 0.9078049032296645 1.0222517508749158 1.0 19.641684531731006 2.7534601343348752 24.974518565993577 0.9445680496288158 1.0597744286373167 0.3729147739255362 0.06561834530310443 764.5250869679679 1281492.8738902642 0.019728932224527245 0.020846680041842605 566.8395366176702 -2.7534601343348752 0.11520637900850095 DAGTIAGLNVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAGTIAGLNVMR 12 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 185.08 3.1399e-05 250140000.0 63634.0 80843.0 71726.0 65626.0 77296.0 76707.0 71121.0 75104.0 109580.0 62951.0 False True 63291.40161440202 83533.8103843745 81824.3973464319 73934.24487121461 87139.187430714 71404.42563885554 67680.60552139605 80708.64185038456 82575.4772967717 58933.41328493739 1.073947665450738 1.4174269862920812 1.3884211483020472 1.2545386521861486 1.4786041156212077 1.2116119134933183 1.1484250062721943 1.3694886712257108 1.4011657003053124 1.0 15.846798205668492 DAHNALLDIQSSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DAHNALLDIQSSGR 14 0 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 ;;;; 253.46 3.145099999999999e-24 3546740000.0 2156260.0 2765750.0 2503470.0 2599240.0 2588880.0 2671640.0 2524210.0 1063533.0 2707270.0 2523370.0 False True 2144650.935743007 2857806.3168188175 2855936.8154486767 2928303.5174939176 2918558.52250604 2486955.8151640906 2402104.3188813846 1142899.2329711455 2040099.584059417 2362326.3662342536 0.907855479411069 1.2097423783888086 1.2089509968943366 1.2395846566119817 1.2354594878261749 1.0527570833188924 1.0168384661898096 0.4838024285327784 0.8635976862551413 1.0 21.171776862772766 1.954295079246683 6.04640274842644 0.7280942486616838 1.1484471443593993 0.5070216470425096 0.15579235823309562 0.13955787599636885 12.805912891999556 0.06598904988377104 0.04112732106428213 90.0108948403064 -1.954295079246683 0.4203528956977155 DAIFIMTSNVASDEIAQHALQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAIFIMTSNVASDEIAQHALQLR 23 0 Q9H078-5;Q9H078-3;Q9H078-2;H0YGM0;Q9H078-4;Q9H078;A0A2R8Y602;A0A2U3TZY2 Q9H078-5 CLPB Caseinolytic peptidase B protein homolog 0 ; 163.91 1.4912e-11 227496000.0 190493.0 211247.0 211027.0 183500.0 237733.0 279790.0 214971.0 220047.0 265100.0 236060.0 False True 189467.4068537619 218278.22869349195 240737.76732043448 206731.08118532092 268006.88839611254 260448.77585481628 204572.03146103138 236468.02451602556 199769.6571580046 220994.44869886595 0.8573401185834139 0.9877091030052289 1.0893385274508474 0.9354582542795872 1.2127313150807115 1.1785308517396835 0.9256885531083531 1.0700179389494275 0.9039578067873418 1.0 17.753650604527703 4.662959459877103 2.887903195863855 1.044659959197813 0.8396571566044054 0.23518449374265282 0.09849395524746415 0.47320446960453905 6.04684440661558 0.02406595854884742 0.20572692318206998 46021.36119781431 -4.662959459877103 -0.20500280259340753 DAIHFYNK ddPTM_BT-474_Trastuzumab_2h_R1 6 DAIHFYNK 8 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;;;; 122.74 0.0013774000000000002 4900000000.0 7594350.0 7831820.0 7473290.0 5960000.0 5361050.0 7229590.0 7498920.0 6551760.0 10457390.0 7465420.0 False True 7553462.863411599 8092497.394264825 8525464.272998845 6714535.38890744 6043747.940067139 6729825.459924291 7136168.59094371 7040685.60036317 7880306.35634684 6988970.504132381 1.080769028706796 1.1578954853908683 1.2198455077121844 0.9607331129724077 0.8647551075646466 0.9629208559322343 1.021061483479476 1.0073995299021812 1.1275346421461412 1.0 22.73664852736148 3.7302891845348634 24.947351205924125 0.988883888828778 1.1533425563716262 0.5339956513267967 0.06878271778549164 456.2318191308629 1376035.022495806 0.019417489484680785 0.03064147441565022 5373.895098885731 -3.7302891845348634 0.1644586675428482 DAILDALENLTAEELKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAILDALENLTAEELKK 17 1 H3BP42;Q9ULZ3-3;Q9ULZ3-2;Q9ULZ3 H3BP42 PYCARD Apoptosis-associated speck-like protein containing a CARD 0 ; 222.3 5.4647e-15 212493000.0 544220.0 455620.0 410330.0 403120.0 376180.0 606230.0 578720.0 511740.0 771210.0 568340.0 False True 541289.9799885256 470785.03627189406 468100.8973477028 454154.9506671751 424084.29320645274 564322.7470119197 550725.1026749109 549928.6373630664 581155.6291845522 532068.0546196454 1.0173322290049394 0.8848210904306967 0.8797763618459106 0.853565529304015 0.797048966808605 1.0606213662185227 1.035065153589427 1.0335682298314055 1.092258075144161 1.0 19.021251261108716 2.722012780979017 24.99670253481845 1.0445031650427035 0.8842108613598032 0.6674038364766415 0.055684094132306704 492.94630451664125 744630.055833262 0.01819483996660934 0.017199289029444207 527.2453776525529 -2.722012780979017 -0.16029230368290026 DALDGPAAEAEPEHSFDGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DALDGPAAEAEPEHSFDGLR 20 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 268.65 4.1354e-37 5664880000.0 1894490.0 2052660.0 1827620.0 1843160.0 1778540.0 2144900.0 2011850.0 1757950.0 2354650.0 1900610.0 False True 1884290.276337628 2120981.5472408296 2084933.010042183 2076503.8670165462 2005026.5267675193 1996628.1115515013 1914529.129486658 1889137.1556892223 1774378.058193495 1779311.4426059136 1.058999695735091 1.1920237775431368 1.1717639532451203 1.1670266471030926 1.126855298491776 1.1221352618444997 1.0759943895390847 1.0617237153954688 0.9972273631842701 1.0 20.762887624829528 1.8229129853023205 0.9385564715962387 0.994961310394068 1.1509836578242865 0.7226263225092521 0.03475091080882541 0.2712470657530799 0.4431670764497009 0.028989193500469426 0.012575427910332298 66.51398762589318 -1.8229129853023205 0.15602234743021848 DALDGPAAEAEPEHSFDGLRR ddPTM_BT-474_Trastuzumab_2h_R1 2 DALDGPAAEAEPEHSFDGLRR 21 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 222.7 2.4858e-25 586620000.0 189532.0 286690.0 257600.0 250727.0 279490.0 261630.0 278770.0 218759.0 333400.0 297160.0 False True 188511.58077098473 296232.30334223533 293867.8409006613 282469.0124923813 315081.3948329835 243544.13391077396 265284.83009518357 235083.90741569395 251238.0373311156 278194.9943885247 0.67762391334659 1.0648369284765775 1.0563376294623334 1.0153633896729557 1.1325918912579125 0.8754439829015844 0.9535931107541393 0.8450328444349284 0.9031004956913019 1.0 18.085736935884825 DALEPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DALEPGQR 8 0 H3BQB1;P07741-2;P07741;H3BQZ9 H3BQB1 APRT Adenine phosphoribosyltransferase 0 94.302 0.024324 328530000.0 446610.0 462570.0 384700.0 396400.0 418160.0 402480.0 440190.0 426490.0 532290.0 457970.0 False True 444205.5013830359 477966.3628205304 438862.4161276572 446584.19935619185 471410.1973714989 374657.50493601034 418896.3280109011 458316.84947233816 401114.26182057464 428741.9625121565 1.0360672390924202 1.1148112492184112 1.0236049990446496 1.041615326709546 1.0995196145703434 0.8738531277432107 0.9770359904974866 1.0689806213203195 0.9355610061359494 1.0 18.709750100235283 2.793996579474382 24.99999397692644 0.9835713958810147 1.0626048284424432 0.41539870962087055 0.053576566772748566 356.49406498093555 160767.54646787356 0.017008980833291467 0.01804073594994206 622.2953839194921 -2.793996579474382 0.07903343256142847 DALHSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DALHSEK 7 0 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 77.282 0.038468 211240000.0 515620.0 504880.0 422810.0 400120.0 428050.0 432980.0 486970.0 508680.0 662630.0 562580.0 False True 512843.95921076724 521684.62559359486 482337.9728695985 450775.15097477176 482559.63024887646 403049.1117252873 463413.4006939477 546640.2846247017 499333.71528709354 526675.6627510296 0.9737377203495334 0.9905235090390078 0.9158159508456527 0.8558875658316918 0.9162368120985159 0.7652700518190013 0.8798838326292907 1.0379068623930507 0.948085796634083 1.0 19.006555269718284 1.7475467374344194 24.99999999999878 0.9954836212533622 0.8975307318518332 0.3314160662572594 0.06224513488012218 2.633727940620775 7344.158816651199 0.03113241755036075 0.017264461304965034 55.91737008839792 -1.7475467374344194 -0.09795288940152902 DALKTEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DALKTEFK 8 1 Q5VTU8;P56381 Q5VTU8 ATP5EP2;ATP5E ATP synthase subunit epsilon-like protein, mitochondrial;ATP synthase subunit epsilon, mitochondrial 0 ; 93.111 0.010987 300340000.0 651610.0 894820.0 823800.0 864060.0 906590.0 941900.0 859540.0 624830.0 901970.0 856550.0 False True 648101.8041606771 924603.5427698878 939783.8794020375 973449.907405933 1022038.8627200756 876788.669994108 817960.766438333 671457.9874224503 679691.5792787827 801884.2456706513 0.8082236403318298 1.15303866831378 1.1719695011791316 1.2139531517941142 1.2745466296888017 1.0934105199445723 1.0200484307485504 0.837350267258188 0.8476180732423874 1.0 19.613034468910435 2.028801136474194 2.7690490281573465 0.8811579205722853 1.1351563416715664 0.3907760359154502 0.12392307738548576 0.2538221004865693 3.7698306103734183 0.06160239054668344 0.036398424224515426 106.85654708489206 -2.028801136474194 0.25399842109928117 DALLDHDLALPLCLLMAQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DALLDHDLALPLCLLMAQQR 20 0 Q8NI27;A0A0C4DG98 Q8NI27 THOC2 THO complex subunit 2 0 ; 189.64 2.1154e-17 259690000.0 311840.0 299410.0 277760.0 269910.0 202020.0 322900.0 294700.0 277250.0 362800.0 286350.0 False True 310161.08808868116 309375.68085283315 316866.19366679987 304080.57832550403 227746.04953364798 300578.68302484043 280444.2351366744 297939.8028469739 273392.8012709319 268074.89784343075 1.156994148216857 1.1540643429938902 1.182006208771795 1.1343120179163602 0.849561265772311 1.1212488951516584 1.0461413485289026 1.1114050783709921 1.019837379293182 1.0 18.03227660814634 3.45564651038909 24.999996006048615 1.0373928600852573 1.162464822116806 0.4539265386149679 0.0707500317681771 226.1975765574408 263328.866880966 0.019524831228338885 0.02643901856418133 2855.2655827067215 -3.45564651038909 0.12507196203154858 DALRDEYDDLSDLNAVQMESVR ddPTM_BT-474_Trastuzumab_2h_R1 3 DALRDEYDDLSDLNAVQMESVR 22 1 U3KQM0;O15173;O15173-2 U3KQM0 PGRMC2 Membrane-associated progesterone receptor component 2 0 ;; 243.24 8.6098e-31 318080000.0 159505.0 218989.0 232009.0 164482.0 232125.0 288831.0 203994.0 175304.0 217859.0 226162.0 False True 158646.24280267154 226277.91648335377 264673.85054162104 185305.40433528056 261684.74283733283 268864.7928050406 194126.0308872435 188386.07465567472 164170.56861103626 211728.1475329704 0.7492921685245797 1.068719105701889 1.2500645456240338 0.8752043906038743 1.2359468775713118 1.269858523478428 0.9168645413903417 0.8897545123344507 0.7753837669857832 1.0 17.69185355108906 2.02788760522683 24.621462280659937 0.8829247557729977 1.0818298759204348 0.22533112024596957 0.16314881537256684 249.2260328197205 220035.92312643127 0.06107025056624567 0.04510248599518344 106.63201234382515 -2.02788760522683 0.1989051201474371 DALSDLALHFLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DALSDLALHFLNK 13 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 241.15 7.0818e-17 6566100000.0 3851900.0 3915400.0 3727800.0 3281500.0 3258400.0 4292700.0 4413700.0 4044300.0 5967100.0 4371600.0 False True 3831161.7983863237 4045721.7220907146 4252641.837381545 3696937.5635402226 3673337.9259500965 3995955.7529288693 4200192.469028632 4346106.202539284 4496588.160043487 4092600.7452849434 0.9361191176051508 0.9885454198657815 1.0391049853277246 0.9033223110755279 0.8975558952781122 0.9763854335247781 1.0262893280923249 1.061942386524364 1.0987116603602183 1.0 21.964586500485186 2.1678617762574115 2.7573454809461837 1.0579274822578713 0.9556031261096074 0.5049038497530869 0.044442193565484615 0.2296336910355391 3.5281712951686255 0.02059940653196797 0.0139425159889783 147.1843981254735 -2.1678617762574115 -0.10232435614826385 DALYDVITVGAPAAHFQGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DALYDVITVGAPAAHFQGFK 20 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 292.31 1.6925999999999994e-54 923700000.0 791860.0 850180.0 769600.0 712420.0 788310.0 889140.0 867140.0 834330.0 1171270.0 964450.0 False True 787596.7137439173 878477.7273553382 877952.9905168831 802612.2989539308 888696.6058205629 827675.8446104272 825193.125403514 896591.9412418944 882626.2027139057 902897.9752928134 0.872298681906443 0.9729534802317442 0.9723723106502254 0.888929115932108 0.9842713464191291 0.916688116774222 0.9139383939097888 0.9930157844812156 0.9775481027384811 1.0 19.78420345122951 1.6855259180017574 7.062223570683031 0.9888245382008348 0.9346834840063395 0.3643080415869834 0.03519174149301904 0.1445790981396009 14.488025630424742 0.016879816455669203 0.008704214538514467 48.47590414072976 -1.6855259180017574 -0.05414105419449533 DAMEQCHNYNAR ddPTM_BT-474_Trastuzumab_2h_R1 6 DAMEQCHNYNAR 12 0 Q92785;J3KMZ8;Q92785-2;E9PN04 Q92785 DPF2 Zinc finger protein ubi-d4 0 ;;;;; 216.68 3.8474000000000006e-11 2051828000.0 1055883.0 1264578.0 1220334.0 1213751.0 1259194.0 1210110.0 1303431.0 1131619.0 1418569.0 1295776.0 False True 1050198.2432476308 1306668.7142764577 1392146.4198667223 1367411.752151305 1419544.8920724283 1126457.9439925347 1240379.062940043 1216066.1560248479 1068981.6778007303 1213078.4663103528 0.8657298537677192 1.0771510257294112 1.1476144854017687 1.1272244872257653 1.1702003881002478 0.9285944605205305 1.0225052190669301 1.0024628989776583 0.8812139589387807 1.0 20.210241441543154 2.725213629481129 24.85174141635007 0.9746802607964855 1.08420837691726 0.28460437297814933 0.08695290028530808 1011.6270390210749 1883621.2362706757 0.028751895030507735 0.027250586967488843 531.1456505586906 -2.725213629481129 0.1095281161207744 DAMHEMEEMIETK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAMHEMEEMIETK 13 0 P78316;E9PFK5;P78316-2 P78316 NOP14 Nucleolar protein 14 0 ; 183.79 1.0058e-05 64904000.0 217030.0 200111.0 180017.0 166249.0 170330.0 234350.0 218475.0 204834.0 317240.0 227369.0 False True 215861.5345942996 206771.5736653461 205361.82886418636 187296.1063541058 192020.51587499393 218149.93610056152 207906.5295944516 220119.7532059768 239060.4527982095 212858.11575960583 1.0141099568789085 0.9714056376354772 0.964782705753698 0.8799105718178544 0.9021056828852835 1.0248607872998936 0.9767376209853028 1.0341149193229353 1.1230976650577684 1.0 17.69953257204022 1.9441059420330382 1.4526602456229174 1.0607801102150614 0.9505400930603978 0.42160333441091946 0.049610679205729195 0.39102143784544735 1.534844600428949 0.03607938052435746 0.016412069039830387 87.9236972219701 -1.9441059420330382 -0.11024001715466358 DANDPVDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DANDPVDDR 9 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 175.73 0.00012491 331200000.0 943260.0 1049700.0 903410.0 945350.0 902340.0 1030410.0 1010320.0 930600.0 1197920.0 1053140.0 False True 938181.5929660377 1084638.6299429508 1030602.2754195137 1065031.213071082 1017247.6504118004 959180.1820242349 961446.9618027976 1000046.09749105 902708.6673056092 985927.7035614832 0.9515724018881188 1.100119842484284 1.045312218833746 1.0802325659618366 1.0317669812271018 0.9728707070096237 0.9751698408815845 1.0143199079187721 0.9155931657511394 1.0 19.911122334490948 2.8401038890926693 4.254460918168125 0.9796148674171515 1.0490383895929716 0.3641133488103667 0.04352710943287478 0.24460222412383545 7.63905754132877 0.012962123707662355 0.013778413220462004 691.9964860062976 -2.8401038890926693 0.06942352217582004 DANNGNLQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DANNGNLQLR 10 0 P05455 P05455 SSB Lupus La protein 0 140.35 9.1756e-05 134970000.0 67812.0 80566.0 83189.0 84706.0 91531.0 94205.0 76320.0 91324.0 103700.0 71954.0 False True 67446.90772662142 83247.59060682464 94901.2881082496 95429.77091489818 103186.9303032588 87692.83008471697 72628.11002928736 98139.06061387567 78144.52450880836 67361.83411708134 1.0012629348748463 1.2358272558631989 1.4088287433400648 1.416674177087163 1.5318307711739263 1.3018177315703492 1.0781789270026811 1.4568941285550592 1.1600712114368157 1.0 16.039643799954856 2.462626968507146 24.98749532424097 1.2279221356777295 1.3339125352969363 0.10598521392229121 0.17415897458747845 698.1165436404295 1203514.115457251 0.062487778192023107 0.052299380347777445 290.1529353617316 -2.462626968507146 0.10599039961920687 DANQVHSTTR ddPTM_BT-474_Trastuzumab_2h_R1 6 DANQVHSTTR 10 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 0 ;;;;; 156.58 1.0688e-05 484604500.0 339193.0 415019.0 422630.0 445033.0 428341.0 400504.0 440571.0 391359.0 473031.0 447192.0 False True 337366.8225758847 428832.65653071675 482132.63043418713 501374.13216973835 482887.68737398443 372818.1011650067 419258.89758533967 420564.19586073444 356458.8483406567 418651.82369966654 0.8058410437449944 1.0243181380199928 1.151631506519032 1.1975921369195213 1.1534350504117226 0.8905206667210408 1.0014500686520564 1.0045679298472132 0.851444632894694 1.0 18.67539138413554 2.735898440686292 24.993533974584807 0.9587524915341507 1.0762219662323227 0.2118216638401682 0.11134320409470073 407.7926625276607 3828499.7444987404 0.03740603811971815 0.03675453308063627 544.3753363493524 -2.735898440686292 0.11746947469817204 DAPAPRPLPASEGHLQPPAQTSGPTGS(ph)PPCIQTSPDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAPAPRPLPASEGHLQPPAQTSGPTGSPPCIQTSPDPR 38 1 B4DF95;Q15735 B4DF95 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 1 DAPAPRPLPASEGHLQPPAQT(0.001)S(0.015)GPT(0.021)GS(0.964)PPCIQTSPDPR 146.41 1.9790999999999999e-13 162620000.0 17361.0 25728.0 28210.0 27536.0 21786.0 31166.0 24601.0 23791.0 34973.0 29984.0 True False 17267.530304988424 26584.340927095564 32181.72279428437 31022.05477667033 24560.317964261223 29011.56777687265 23410.955645053702 25566.405228250125 26354.372764190502 28070.39544940609 0.6151509456327866 0.9470597225824987 1.1464648886863213 1.105152039364187 0.874954469684212 1.0335290013695362 0.8340087579902273 0.9107960475416479 0.9388671709912838 1.0 14.77676176790571 -0.3238623680800322 8.314104011200245 0.9999520694952465 0.9403642360882211 0.017418545012404474 0.14162878696285394 0.0 0.0 0.1370167443660253 0.03229515635910673 0.4743923007287524 0.3238623680800322 -0.05958783340702545 DAPHSEGDMHLLSGPLS(ph)PNESFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAPHSEGDMHLLSGPLSPNESFLR 24 0 O95714;A0A0J9YXQ8 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 DAPHSEGDMHLLSGPLS(1)PNESFLR 176.85 7.3264e-17 30868000.0 15122.0 17762.0 16894.0 17029.0 15869.0 15787.0 18070.0 16373.0 16973.0 18823.0 True False 15040.584832212147 18353.197432644265 19272.528354719623 19184.869653977305 17889.823087067904 14695.681848600669 17195.885065896506 17594.83640040938 12790.231576547772 17621.70002481893 0.8535263232848441 1.0415111712715046 1.093681558962848 1.0887070842743187 1.0152155048531835 0.8339536950409343 0.9758357616845882 0.9984755372993687 0.7258227956742895 1.0 14.105065492177 2.908896096750336 9.226017451541637 0.9202761132642927 1.0294273421914342 0.23096104758930802 0.09977659092069331 0.6211138844931493 58.87771758983653 0.03050334940086879 0.03238530215818771 810.7670618120738 -2.908896096750336 0.10915122892714146 DAPTS(ph)PASVASSSSTPSSK ddPTM_BT-474_Trastuzumab_2h_R1 9 DAPTSPASVASSSSTPSSK 19 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 DAPT(0.002)S(0.993)PAS(0.004)VASSSSTPSSK;DAPTS(1)PASVASSSSTPSSK;DAPTS(1)PASVASSSSTPSSK;DAPTS(0.974)PAS(0.026)VASSSSTPSSK;DAPTS(0.999)PAS(0.001)VASSSSTPSSK;DAPT(0.409)S(0.591)PASVASSSSTPSSK;DAPTS(0.998)PAS(0.001)VASSSSTPSSK;DAPT(0.437)S(0.562)PASVASSSSTPSSK;DAPT(0.006)S(0.994)PASVASSSSTPSSK 369.44 6.3274999999999985e-108 19032719000.0 4398890.0 3977960.0 3773652.0 3532004.0 3556537.0 4457790.0 4427120.0 4269360.0 5471760.0 4349730.0 True False 4375206.865002622 4110363.9938723953 4304949.400428811 3979155.3442554683 4009440.905703653 4149633.4698089263 4212963.292359253 4587961.3225708045 4123318.0658275504 4072126.5074087866 1.0744280309176089 1.009390053671967 1.0571747691522915 0.9771688912453561 0.9846061752769508 1.0190335349992503 1.0345855622840376 1.1266745554745201 1.0125712102326945 1.0 21.95735095116417 1.987943982601449 23.874221148913083 1.0655251683496114 1.0186401291479354 0.014986217325704376 0.04289291040790949 510.3374097571613 1010607.1614970526 0.016715890461524305 0.011436325091001814 97.26217622362269 -1.987943982601449 -0.04688503920167597 DAQEFGADVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAQEFGADVR 10 0 O60885;O60885-2;O60885-3;M0QZD9 O60885 BRD4 Bromodomain-containing protein 4 0 105.86 0.0082009 0.0 171040.0 230100.0 195810.0 198820.0 188650.0 219380.0 194960.0 156610.0 240190.0 201260.0 False True 170119.13964433028 237758.73940161275 223378.34598896926 223990.5916145261 212673.4592838463 204214.77696497194 185529.03998047486 168297.0334494663 180998.39288110565 188415.4144926453 0.902893959617995 1.2618858177916943 1.1855630102795476 1.1888124558050397 1.1287476656648383 1.0838538742430937 0.9846807941911615 0.8932232742350054 0.9606347408914935 1.0 17.52355747283972 2.3056002734053256 2.237111746674989 0.9383256094115152 1.1459416264260518 0.44809535706130066 0.09100049090046307 0.24168276542703185 2.4794913337773647 0.03841237714302862 0.027738486109930568 202.11580393582196 -2.3056002734053256 0.20761601701453658 DAQHYGGWEHR ddPTM_BT-474_Trastuzumab_2h_R1 5 DAQHYGGWEHR 11 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;; 152.4 1.9062e-05 15273680000.0 2551260.0 3253540.0 2895880.0 3046360.0 2882080.0 2976940.0 3252000.0 1578274.0 3240240.0 2524670.0 False True 2537524.299631632 3361832.1120935366 3303594.732559814 3432028.8636496756 3249095.804573491 2771151.144762986 3094688.336153597 1696052.8201929831 2441726.268991522 2363543.39912127 1.0736101992352014 1.4223695293022398 1.3977296688472236 1.4520693230873833 1.3746715231806008 1.1724562137480776 1.309342717084931 0.717589032138589 1.033078669043826 1.0 21.172519924869984 1.7558026125124808 24.999999999999993 0.8982949618600485 1.3240788224995528 0.6459788492947387 0.13458566106026348 3.6706079531857045 5327.986995827161 0.06105270375455157 0.03385715049172097 56.99051906525102 -1.7558026125124808 0.42578386063950424 DAQIGWIQTVEDLHER ddPTM_BT-474_Trastuzumab_2h_R1 2 DAQIGWIQTVEDLHER 16 0 Q9H2M9 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit 0 ; 231.77 1.0314999999999999e-15 277430000.0 250314.0 260748.0 228868.0 240794.0 249533.0 288350.0 259924.0 228785.0 292445.0 290100.0 False True 248966.33723649976 269426.83955450536 261090.62504368246 271278.49571083474 281309.5484520334 268417.04320288834 247350.4831138952 245858.09844669004 220375.84831223183 271585.5696328946 0.916714159640479 0.9920513815174082 0.961356766475486 0.9988693290204081 1.0358044752977225 0.9883332298019766 0.9107644542684714 0.9052693734023473 0.8114416705206998 1.0 18.051047300219246 2.1918770629383766 4.7555023013627045 0.8984432925928713 0.9850671889082845 0.3395869028530316 0.051023995506053445 0.20368098763185252 9.997820369731993 0.01887206360865705 0.01401814541577517 155.55252420092413 -2.1918770629383766 0.08662389631541323 DAQRLS(ph)PIPEEVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 DAQRLSPIPEEVPK 14 1 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK 199.36 1.2572000000000002e-08 3949990000.0 4054880.0 3338830.0 3007260.0 2748590.0 2825790.0 3966360.0 3763020.0 3796810.0 5155290.0 3679890.0 True False 4033048.976619518 3449960.938184642 3430656.0684274975 3096561.212180718 3185637.6067304565 3692174.8690071376 3580988.346467624 4080147.2420105264 3884837.8568468164 3445036.2696876684 1.1706840395573423 1.001429496850383 0.9958258200685142 0.8988472021113021 0.9247036481909872 1.0717375899621153 1.039463177202567 1.1843553804966 1.1276623967732626 1.0 21.716087741171908 2.2325127499912902 2.220130003951871 1.1186618100604373 0.9953227648124451 0.18407006375137447 0.08320253203766068 0.3976977640857641 3.982225985480929 0.03907705734747995 0.026318604095985375 170.80978655580677 -2.2325127499912902 -0.12333904524799222 DAS(ph)PINR ddPTM_BT-474_Trastuzumab_2h_R1 1 DASPINR 7 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 DAS(1)PINR 93.649 0.023671 0.0 247420.0 231220.0 203860.0 178190.0 170190.0 186180.0 233730.0 226920.0 297980.0 223130.0 True False 246087.91821094614 238916.0179245586 232561.716017115 200748.83572976748 191862.6877048387 173309.8148205786 222423.58696469243 243853.9226764123 224546.82172743234 208889.65236879632 1.178076153702798 1.1437427139892526 1.1133232947629472 0.9610281478919015 0.9184882330413553 0.8296716130035909 1.0647898756229526 1.1673815333173434 1.0749542602090847 1.0 17.672381502763482 3.926563909802343 4.282369007464671 1.0123415123488388 1.1555687603320106 0.36164004446646913 0.08746531945066836 0.3069361228092873 10.60980954532804 0.027634476264080377 0.053915773178949175 8444.304972651273 -3.926563909802343 0.14322724798317177 DAS(ph)PINRWS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 DASPINRWSPTR 12 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 DAS(1)PINRWS(0.971)PT(0.029)R 55.589 0.071875 525270000.0 562860.0 598120.0 487400.0 515260.0 542850.0 625810.0 568470.0 590710.0 740930.0 627130.0 True False 559829.6242996256 618028.0626288246 556021.683443255 580491.8631692021 611978.7297759663 582549.2276982829 540970.9343337124 634791.7797646009 558337.7294533399 587106.0264869952 0.9535409262436284 1.0526685721944542 0.9470549753513241 0.9887342949664994 1.0423649258683296 0.992238541961529 0.9214194880108173 1.0812217063465317 0.950999826716491 1.0 19.163261540079045 5.10292098472978 12.77022750906772 0.9997759278706242 0.0001448839358447879 0.06891678569668913 0.04766758761078029 311424.1842151254 687336.1910187574 0.01082841741163824 8575234.74463194 126742.12510386916 -5.10292098472978 -0.9996310439347794 DAS(ph)PSKEER ddPTM_BT-474_Trastuzumab_2h_R1 3 DASPSKEER 9 1 Q9BUQ8;F8VVA2;F8W1J5;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 DAS(0.978)PS(0.022)KEER;DAS(0.898)PS(0.102)KEER;DAS(0.979)PS(0.021)KEER 169.65 3.531e-05 4006070000.0 6297390.0 4780170.0 3987110.0 3840150.0 4048900.0 4566720.0 5820070.0 5180020.0 8489400.0 5555360.0 True False 6263485.551945807 4939275.0687762145 4548460.431418617 4326312.596260552 4564503.415289511 4251033.395302573 5538530.979273517 5566579.396008588 6397301.122131899 5200812.168617013 1.204328352740987 0.9497122581317246 0.8745673337070607 0.8318532675274436 0.8776520411240486 0.8173787588320071 1.0649357830483444 1.070328867017868 1.2300580976053694 1.0 22.31030550414387 2.09622963227472 6.703286822240473 1.0980582712857854 0.9185424971400008 0.3340191546968617 0.11485175831086901 0.2472946992664597 14.66328368929847 0.04449647735470931 0.032726848133649976 124.80432399964353 -2.09622963227472 -0.17951577414578457 DAS(ph)PTPSTDAEYPANGSGADR ddPTM_BT-474_Trastuzumab_2h_R1 2 DASPTPSTDAEYPANGSGADR 21 0 O43639;E9PEE2;E7EPF5 O43639 NCK2 Cytoplasmic protein NCK2 1 DAS(1)PTPSTDAEYPANGSGADR;DAS(1)PTPSTDAEYPANGSGADR 381.91 1.2887999999999992e-113 1446820000.0 293900.0 289390.0 267000.0 259800.0 272907.0 347440.0 362820.0 301530.0 381140.0 316790.0 True False 292317.6750553594 299022.17121005064 304591.27919439645 292690.65336210554 307660.08880348137 323422.29058578645 345269.01049300353 324031.6997383153 287213.1540143414 296572.1909824362 0.9856543666046936 1.0082609910912368 1.0270392452690724 0.9869119973539241 1.0373868425907196 1.0905347851880705 1.1641988729599104 1.092589627722396 0.9684426347018861 1.0 18.17802379976591 2.964633160667355 4.006453898160107 1.078688206707615 1.0044905473777406 0.20547763561151267 0.05217863922186612 0.2844300994085826 9.914109756811687 0.01651028026164271 0.018429415762675684 921.7924796747686 -2.964633160667355 -0.07419765932987432 DAS(ph)SPVPPPHVPPPVPPLRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DASSPVPPPHVPPPVPPLRPR 21 1 O94875-12;O94875-10;O94875-3;H7BXR3;O94875-9;O94875-5;O94875-4;O94875-11;O94875-2;O94875-8;H7BZK1;H7BZX1;H7C1R7;O94875-7;O94875;O94875-6 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 DAS(0.5)S(0.5)PVPPPHVPPPVPPLRPR 85.805 0.0017182000000000002 124850000.0 80447.0 75558.0 60633.0 66170.0 47734.0 68403.0 63972.0 52686.0 81930.0 72118.0 True False 80013.88229050199 78072.90235422457 69169.5993685163 74547.11521543714 53812.64195841571 63674.46161334213 60877.429963228096 56617.69685408714 61739.449305753726 67515.36749667392 1.185121036250655 1.156372323057721 1.0245015606546743 1.1041503287249326 0.7970428652568134 0.9431106424249115 0.9016825682868003 0.838589775237117 0.9144503184226207 1.0 16.04292829782953 3.688128870993919 1.2261711122663608 0.8901880281592205 1.1731608224826708 0.6690500599783815 0.07180993932599351 0.26420531228773614 0.7640343035631053 0.022485009179629506 0.05827388474968117 4876.731790330041 -3.688128870993919 0.28297279432345035 DASDDLDDLNFFNQK ddPTM_BT-474_Trastuzumab_2h_R1 3 DASDDLDDLNFFNQK 15 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 ;; 313.05 7.4744e-56 367962000.0 778420.0 680300.0 714480.0 594191.0 655103.0 854590.0 739710.0 791800.0 1155900.0 824840.0 False True 774229.0732105917 702943.3742499658 815072.5736285122 669415.5196762246 738526.483950309 795514.2047884737 703927.4013333884 850888.1366789321 871043.9332664572 772198.0050189466 1.0026302427336564 0.9103149317676862 1.0555227653152428 0.866896204503662 0.9563952239583791 1.0301945869038538 0.9115892514072436 1.1019040856730196 1.1280059357898564 1.0 19.558611301504733 1.694878816188916 7.62213483495647 1.0852810408629001 0.9624671999737615 0.4121420676986475 0.06234310135499941 0.10577233701722119 12.461686376335976 0.028779387377558946 0.01505517344186982 49.53119616334165 -1.694878816188916 -0.1228138408891386 DASIVGFFDDSFSEAHSEFLK ddPTM_BT-474_Trastuzumab_2h_R1 10 DASIVGFFDDSFSEAHSEFLK 21 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;;;;;; 412.01 8.3594e-152 4830764000.0 5107365.0 4935997.0 4736863.0 4033790.0 4255494.0 5752191.0 5590659.0 5220928.0 6588378.0 5285643.0 False True 5079867.514321596 5100288.676271802 5403772.136848716 4544467.400406194 4797405.936610936 5354555.57537113 5320217.465778632 5610540.158695202 4964760.521642171 4948308.738473357 1.0265866142961864 1.0307135115917068 1.0920442564212107 0.9183880070119159 0.9695041660013767 1.0820981184417988 1.0751587556398141 1.1338298508080067 1.003324728516008 1.0 22.238504086123665 2.7203075367477907 24.32274064726045 1.0739192903183925 1.0084919680106017 0.14795393584167094 0.05616612067721565 868.3492635920168 1157097.9273408083 0.01868157522924665 0.017648386544066755 525.1792235232115 -2.7203075367477907 -0.0654273223077908 DASNWSTDKLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DASNWSTDKLK 11 1 O95433;O95433-2;G3V3W9 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 87.719 0.012325 461560000.0 160290.0 166870.0 160590.0 144170.0 137300.0 171840.0 193700.0 162720.0 329160.0 196070.0 False True 159427.0164498932 172424.16707495484 183199.67612669722 162421.907217917 154784.34115914212 159961.10526784934 184329.99099414272 174862.9926754176 248042.92851802654 183556.64473602764 0.868543967335886 0.9393512685030695 0.9980552672999456 0.8848598613877234 0.8432510922268006 0.8714536349141107 1.0042131204742124 0.9526377698115349 1.3513154420246485 1.0 17.485865815265996 1.3780169213560054 7.2240621071081845 1.175248739641378 0.9208336661299962 0.5450936777898694 0.0936514530751868 0.15357661159154126 9.423049965933203 0.059648182109211086 0.02177558159044885 23.87904320687391 -1.3780169213560054 -0.2544150735113818 DASPS(ph)KEER ddPTM_BT-474_Trastuzumab_2h_R1 3 DASPSKEER 9 1 Q9BUQ8;F8VVA2;F8W1J5;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 DAS(0.297)PS(0.703)KEER;DAS(0.185)PS(0.815)KEER;DAS(0.227)PS(0.773)KEER 142.97 6.2415e-05 6401400000.0 7060000.0 5302070.0 4457820.0 4208950.0 4734540.0 5320600.0 6327300.0 5999700.0 9110200.0 6047200.0 True False 7021989.744439747 5478546.194781 5085442.307933956 4741802.638446635 5337455.60518284 4952799.445345201 6021224.326366746 6447428.079859293 6865113.280425708 5661262.518731613 1.2403575565001357 0.9677251631864706 0.8982876683615324 0.837587485610722 0.9428030563010668 0.8748577599003232 1.06358330963175 1.1388675332624953 1.2126470478468139 1.0 22.432692393829996 2.042293725820665 5.339974476097327 1.1259385294364996 0.9516889738708566 0.2822093813355875 0.11363297405073107 0.22084915928397836 15.120217687926955 0.04522827060542456 0.032195505238256816 110.22845641764691 -2.042293725820665 -0.17424955556564303 DASRPHVVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DASRPHVVK 9 1 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ;;; 98.044 0.0037737 1767990000.0 3770970.0 3785850.0 3680740.0 3476880.0 3391720.0 4206110.0 4317300.0 3693210.0 5134770.0 4145950.0 False True 3750667.516514153 3911859.728655344 4198956.198434397 3917052.6515074573 3823635.4377005473 3915351.5158179314 4108455.7053123945 3968816.083940388 3869374.7358929017 3881351.921473629 0.9663301840174651 1.0078600981820098 1.0818282607159682 1.0091980141858081 0.9851297988585461 1.008759729865308 1.0585115156866636 1.022534458156928 0.996914171705363 1.0 21.88812781727538 DASSS(ph)PASTASSASSTSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DASSSPASTASSASSTSLK 19 0 Q04724;A0A669KBK8 Q04724 TLE1 Transducin-like enhancer protein 1 1 DASS(0.002)S(0.998)PASTASSASSTSLK;DASSS(1)PASTASSASSTSLK 495.32 5.438099999999995e-267 685490000.0 837220.0 738040.0 646720.0 618050.0 633280.0 830320.0 820620.0 833930.0 1097990.0 886760.0 True False 832712.5005438863 762605.2152453988 737772.5546089895 696295.0666299061 713924.4542553629 772921.9327630387 780923.4755271723 896162.0912107365 827405.0768122127 830166.2176065679 1.0030671965244016 0.9186174998111191 0.8887046219925013 0.8387417505826453 0.859977723875179 0.9310447912364239 0.940683273981726 1.0794971804495246 0.9966739904180686 1.0 19.66304069921968 1.9421016530702664 4.196123886377903 1.0315243721925582 0.9028883538553171 0.5593673022711578 0.04682026921772176 0.15835470201179427 5.4298827606886855 0.02293108840084702 0.013531798091954416 87.51886021389625 -1.9421016530702664 -0.12863601833724114 DASVPLIDVTNLPT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 DASVPLIDVTNLPTPR 16 0 Q96A65;Q96A65-2 Q96A65 EXOC4 Exocyst complex component 4 1 DASVPLIDVT(0.002)NLPT(0.998)PR 98.694 0.029588 12301000.0 18217.0 14198.0 11918.0 14659.0 14250.0 14394.0 12680.0 12244.0 19353.0 14020.0 True False 18118.921696098976 14670.57184712775 13595.950806886969 16514.82789697887 16064.653033632716 13398.976659831382 12066.619957696059 13157.709453772215 14583.712466913867 13125.231596874111 1.3804649131230686 1.1177381319977375 1.0358636879310352 1.2582503992472043 1.223951967252041 1.0208563986804213 0.9193452983008567 1.0024744597196928 1.1111203912308187 1.0 13.680055259144508 2.6981796889041965 6.649862012187199 1.0017478921935439 1.1922498075234111 0.5051317106802057 0.09478305247540611 0.1935680447805932 24.778262707943195 0.03129085958359313 0.029781827899371466 499.0909431213783 -2.6981796889041965 0.19050191532986727 DATLLIHEATLEDGLEEEAVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DATLLIHEATLEDGLEEEAVEK 22 0 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-4;Q9BQ52-3 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 ;; 358.02 2.2315999999999986e-96 158090000.0 122714.0 112383.0 103255.0 96788.0 110483.0 129942.0 128999.0 124819.0 191791.0 141553.0 False True 122053.32145880719 116123.600218042 117792.40649145092 109041.3508761028 124552.355165954 120959.4153905663 122758.825545965 134133.62759803934 144526.6779177326 132518.96635037972 0.9210253054351375 0.8762790973709498 0.8888720591134719 0.8228358089346836 0.939883237819996 0.9127705921788584 0.926349102523114 1.0121843785242821 1.0906112679418623 1.0 17.015839329972625 1.7709147438136177 1.9407005541076574 1.0492057523375842 0.8907279444277498 0.7562505151738794 0.03600211879431191 0.14424827243214827 1.0757748063517674 0.024430595153381852 0.010346650812165367 59.008522939148385 -1.7709147438136177 -0.15847780790983435 DATNRS(ph)PTQIVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DATNRSPTQIVK 12 1 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 DATNRS(1)PTQIVK;DAT(0.001)NRS(0.752)PT(0.247)QIVK;DATNRS(0.999)PT(0.001)QIVK;DATNRS(0.999)PT(0.001)QIVK 204.67 6.7019e-08 3866310000.0 1827570.0 1768000.0 1582750.0 1548550.0 1560600.0 1903850.0 1919480.0 1777990.0 2225230.0 1784270.0 True False 1817730.5661821156 1826846.811221431 1805587.4424903798 1744596.2712235905 1759333.159599103 1772241.3306808362 1826627.4192743243 1910672.6422502808 1676851.8830543444 1670396.3610095987 1.0882031406506818 1.093660674713918 1.0809335344810442 1.044420541103876 1.053242931238039 1.0609705409138235 1.0935293334632856 1.1438438725378075 1.003864664815747 1.0 20.67175904340931 1.1525540372690632 10.61923465359695 1.0009421075345941 1.0832791836512334 0.6024123875282303 0.02612653194649593 0.3411288073913552 39.52878090653491 0.029197208269259898 0.0073033263184091235 14.208689940693601 -1.1525540372690632 0.08233707611663932 DATSLLAAGEGGLLDEVEPLRPDELER ddPTM_BT-474_Trastuzumab_2h_R1 5 DATSLLAAGEGGLLDEVEPLRPDELER 27 1 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 0 ;;;; 297.48 9.4986e-71 428829000.0 164129.0 195006.0 187067.0 177051.0 175827.6 196275.0 185127.0 178888.0 208944.0 196686.0 False True 163245.3477004463 201496.65682638378 213404.4075844876 199465.638446552 198218.20264816575 182706.97123165228 176171.69975618302 192237.5309348579 157452.55090615663 184133.3310886436 0.8865605522655665 1.0942975703262616 1.1589667461224205 1.0832674196858323 1.0764927863752247 0.9922536574526821 0.9567615961467195 1.0440126716781812 0.8551007575611469 1.0 17.49039127572435 2.666845232467127 4.39977074119106 0.9755674184624946 1.0687238840873836 0.24255971813444266 0.07904800950618175 0.3364911736368468 12.566889255710302 0.026182959948493262 0.024844592081976445 464.3497675367104 -2.666845232467127 0.093156465624889 DAVAHCHEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 DAVAHCHEAER 11 0 P49792;O14715;Q99666;J3KQ37;F8W705;Q99666-2;H0YBN8 P49792 RANBP2;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 0 129.34 0.00014282 87296000.0 113630.0 175860.0 142360.0 149810.0 143560.0 146290.0 134920.0 53835.0 172150.0 111700.0 False True 113018.2287054799 181713.3937903849 162403.05058469792 168775.93063963455 161841.51505321517 136177.31662961893 128393.40415554836 57852.44106859089 129725.93919181645 104571.21036881875 1.080777666308622 1.737700014654976 1.5530378773651796 1.6139808465864376 1.5476679908591113 1.3022448162293103 1.2278083394340529 0.5532348804661196 1.240551187408828 1.0 16.674126190504563 2.178648475141442 2.33693743617186 0.8879434211799604 1.516142683372565 0.5094438998413725 0.23418366421282966 0.20099011699849367 2.207363248221566 0.10516768742431988 0.06836315765866453 150.88583658125674 -2.178648475141442 0.6281992621926047 DAVDFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAVDFLR 7 0 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 0 101.64 0.020725 71223000.0 202590.0 220360.0 206660.0 210370.0 184310.0 219180.0 218710.0 184180.0 255540.0 223440.0 False True 201499.27794986515 227694.54938956723 235755.93167907858 237002.8204302781 207780.7860090419 204028.60249422252 208130.1617466647 197924.44684708954 192565.59106056788 209179.86790339174 0.9632823654087314 1.088510819285565 1.127048860112871 1.1330097050244634 0.9933115843872892 0.9753739905240388 0.9949818012256713 0.9461926180128365 0.9205742072153088 1.0 17.674384483413835 3.090806915672712 5.752068154162789 0.9667514477294985 1.0817549115640135 0.5407593827737163 0.04833421846185571 0.15844853390249009 8.065671626191913 0.01458487770551879 0.017516786775212068 1232.5567251877956 -3.090806915672712 0.11500346383451499 DAVDWVHYK ddPTM_BT-474_Trastuzumab_2h_R1 3 DAVDWVHYK 9 0 P49902-2;P49902;Q5JUV4;Q5JUV3 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 0 ;; 103.55 0.0042083 492820000.0 1867250.0 1782380.0 1676680.0 1504870.0 1371300.0 1728290.0 1809860.0 1540380.0 2380670.0 1775440.0 False True 1857196.9334709798 1841705.4408285376 1912741.9700361826 1695386.387702204 1545926.9266681098 1608817.3802570489 1722310.1574633908 1655330.9774911483 1793985.7778436327 1662129.8991693433 1.1173596807320065 1.1080394148188646 1.150777668455446 1.0200083570781566 0.9300879115649707 0.967925179049521 1.0362067118364955 0.9959095124384726 1.0793294668125428 1.0 20.66460170568284 3.658486432818116 5.434954895866999 1.000115480397474 1.1233475367299173 0.6774674024564415 0.0383766843509721 0.12651810111082554 6.41623813765841 0.010601798490666118 0.016696300616117776 4554.979563737246 -3.658486432818116 0.12323205633244316 DAVFIPAGWDNEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DAVFIPAGWDNEKK 14 1 O43237;O43237-2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 ; 107.98 0.0013669 417630000.0 422520.0 366150.0 317780.0 281500.0 301590.0 421800.0 433010.0 398270.0 713390.0 454030.0 False True 420245.19926638465 378337.08140765136 362520.6618067241 317137.87113715475 339995.6988360202 392641.9588103984 412063.6520411646 427990.9297740823 537584.5934362467 425053.41668536 0.9886879690169986 0.890093024914349 0.8528825968127085 0.7461129794232703 0.7998893444672563 0.9237473300939167 0.9694396889090038 1.0069109268939174 1.2647459644682408 1.0 18.69728463132134 1.8299124559321691 1.5451144121323586 1.1206974505774845 0.8569806145036498 0.5700809263242042 0.08897995367657738 0.27140509960753667 1.2279447457910766 0.06600896230122091 0.02778051838366401 67.59467058989769 -1.8299124559321691 -0.26371683607383467 DAVIEFLLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DAVIEFLLDK 10 0 Q9BY42;A2A2L6;A2A2L5;A0A0A0MQR2 Q9BY42 RTFDC1 Protein RTF2 homolog 0 134.68 0.00038235 68311000.0 106170.0 108450.0 99291.0 96640.0 101200.0 108880.0 114730.0 101780.0 127860.0 105350.0 False True 105598.39251659579 112059.69269059059 113270.30974715667 108874.61409127763 114087.22014060577 101353.38187595106 109180.07158883828 109375.34042836772 96350.61623622205 98626.47280532723 1.070690145484874 1.136202983876128 1.1484777517161546 1.103908626096551 1.1567606231421819 1.0276488552521423 1.1070057407846488 1.1089856234061723 0.9769244858467426 1.0 16.589687318838553 1.2418041664827497 24.983004476257378 0.9884622049528478 1.108625852133855 0.6361355037015981 0.035990649994315956 46.12792965507713 355317.388728379 0.02600229551313599 0.008604671257616731 17.45035098432531 -1.2418041664827497 0.12016364718100725 DAVLPEQS(ph)PGDFDFNEFFNLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DAVLPEQSPGDFDFNEFFNLDK 22 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 DAVLPEQS(1)PGDFDFNEFFNLDK 113.99 0.00015629 15095000.0 34115.0 23064.0 24337.0 18598.0 17844.0 27193.0 23718.0 24854.0 31734.0 23912.0 True False 33931.32863053281 23831.67129751757 27763.438059003878 20952.504893104106 20116.327630325777 25313.21191543661 22570.669728441273 26708.73168605475 23913.58091381411 22385.91568790683 1.5157445021944296 1.0645832687733991 1.2402190040411016 0.9359681857652545 0.898615357565779 1.1307650876712247 1.008253137513345 1.193104274062962 1.0682422487069647 1.0 14.450303711924617 DAVRGNDTFVTLDEILR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAVRGNDTFVTLDEILR 17 1 F8W7U8;P49959-2;P49959;P49959-3;F5GXT0;F5H742;F5H256 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 52.887 0.083912 107680000.0 17890.0 42489.0 40738.0 50493.0 50436.0 29901.0 27414.0 25372.0 16890.0 33563.0 False True 17793.682227765847 43903.22067985711 46473.55629895629 56885.40862283607 56858.725642407044 27834.014249382963 26087.88008835014 27265.387476405453 12727.685814404746 31420.980605270033 0.5662993924760397 1.3972581324369462 1.4790612961061307 1.8104275400397611 1.809578331010793 0.8858416800879393 0.8302694437224085 0.8677446391291941 0.4050696563006062 1.0 14.939440585397481 2.596369308351142 6.408981613312081 0.7878412047860132 1.4359219596930268 0.4336725415273054 0.35219843398616146 0.23614693710520737 11.523505484188243 0.11889939837956585 0.11171764495186479 394.7928769868296 -2.596369308351142 0.6480807549070137 DAVSGMGVIVHIIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DAVSGMGVIVHIIEK 15 0 P49720 P49720 PSMB3 Proteasome subunit beta type-3 0 ;; 177.84 7.3631e-07 2130044000.0 2807970.0 2499879.0 2229864.0 2171338.0 2195198.0 2795894.0 2783977.0 2645027.0 3291549.0 2813855.0 False True 2792852.2015147945 2583085.9613062353 2543809.4688746603 2446229.1681676987 2474743.453342068 2602620.428606543 2649305.3966850815 2842412.34591496 2480390.853446901 2634272.36483753 1.060198724624682 0.9805690542046697 0.9656592472477883 0.9286166460310459 0.93944099569017 0.9879845620166391 1.0057067112908344 1.0790123238036045 0.9415848135353613 1.0 21.32897308693309 2.2628535401215832 3.5580556497928684 1.0208827510703995 0.9718284608767848 0.062012703476331144 0.04597944790551591 0.39955440002031145 10.699420763975198 0.018137074476255993 0.013932567840929808 183.16966035562712 -2.2628535401215832 -0.049054290193614736 DAVTYTEHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DAVTYTEHAK 10 0 P62805 P62805 HIST1H4A Histone H4 0 ;;; 201.48 2.4111e-07 12761400000.0 11127300.0 10758300.0 9875000.0 9470000.0 10576300.0 12172400.0 11217200.0 11802600.0 20025100.0 12937300.0 False True 11067391.853159249 11116383.51197031 11265314.16496131 10668901.029019019 11923129.11435858 11330950.63874751 10674581.182134718 12683369.944388412 15090182.42759247 12111630.43782023 0.913782162523701 0.9178271719105526 0.9301236710281234 0.8808806612612543 0.9844363379126043 0.9355429640063208 0.8813496446194289 1.0472058249715783 1.2459249400866215 1.0 23.529889754365602 1.5544095462928693 4.470561748441589 1.1302267529985834 0.923122125293246 0.6406811743324566 0.06215832579837469 0.08694094738307966 3.835706530909703 0.03379994596918191 0.014692681537558297 35.84342867555378 -1.5544095462928693 -0.20710462770533744 DAWAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAWAIR 6 0 P17174;P17174-2 P17174 GOT1 Aspartate aminotransferase, cytoplasmic 0 110.54 0.066582 127020000.0 224550.0 258160.0 237470.0 208910.0 190390.0 201380.0 197930.0 159320.0 317670.0 209340.0 False True 223341.04774985064 266752.69953898445 270903.71187375824 235357.98457997487 214635.03797005877 187459.0745975299 188355.36973397317 171209.26741056755 239384.48505991464 195979.74197500915 1.1396129288624666 1.361123842958218 1.3823046665114154 1.2009301686395073 1.0951899201777116 0.9565227135641101 0.9610961206285892 0.8736069640932568 1.2214756619612264 1.0 17.580345008049417 3.197543906468375 2.161415119404205 0.9826945874141253 1.2993379880901097 0.5949357917874867 0.10494033379381902 0.18982558980974507 1.8203888151475933 0.03289961951056529 0.043783704621937015 1575.955341221635 -3.197543906468375 0.3166434006759844 DAWEIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DAWEIPR 7 0 J3QRU1;P07947;H0Y3C5;J3KPD6;P07948-2;P08631-3;P08631-2;P07948;P08631-4;P08631;P12931;P12931-2 J3QRU1;P12931 YES1;HCK;LYN;SRC Non-specific protein-tyrosine kinase;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Lyn;Tyrosine-protein kinase HCK;Proto-oncogene tyrosine-protein kinase Src 0 89.14200000000002 0.042085 109700000.0 110480.0 143070.0 150180.0 128440.0 158980.0 166920.0 135910.0 117150.0 143640.0 141850.0 False True 109885.18795548196 147831.99846235855 171324.03861203924 144700.49083075012 179225.1606517142 155381.2132874151 129335.51407338095 125892.3278756463 108241.84667738878 132797.011556105 0.8274673252647475 1.113217810627474 1.2901196842043172 1.0896366502164552 1.3496174240035057 1.1700655870690928 0.973933920333278 0.9480057299516748 0.8150924889726002 1.0 17.018863155295605 2.145173847786579 4.031585326310027 0.9251861691070432 1.1529560321367447 0.3521545105927816 0.13711654315776814 0.2461341711409934 7.4918894148946995 0.05539092382302636 0.039815807491548 139.6927438255535 -2.145173847786579 0.22776986302970148 DAYRPTTDADKIEDEVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DAYRPTTDADKIEDEVTR 18 2 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;H0Y4F5;H0Y6T5;H0Y314 H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 0 ; 121.82 2.1048e-05 328040000.0 212355.0 161252.0 146507.0 135187.0 142924.0 216788.0 209746.0 154198.0 276000.0 189673.0 False True 211211.7042748587 166619.17534110753 167133.91213832775 152301.66033896472 161124.52422308223 201801.9558240602 199599.78467246966 165705.03776157837 207983.49821052156 177567.9067527747 1.1894700350831178 0.9383405953705872 0.9412394119790236 0.8577093863645765 0.9073966527488193 1.1364776412272868 1.1240757878075887 0.9331924940258893 1.1712899138924584 1.0 17.438011330040837 2.746924365048074 24.592659533906087 1.0619001357877078 0.9577643145962436 0.1999189760524418 0.10424817384615884 874.3537290613722 2570938.180353517 0.03265283657352751 0.03413373457229045 558.3729423190744 -2.746924365048074 -0.10413582119146425 DAYSGGAVNLYHVR ddPTM_BT-474_Trastuzumab_2h_R1 6 DAYSGGAVNLYHVR 14 0 P28074;P28074-3 P28074 PSMB5 Proteasome subunit beta type-5 0 ;;;;; 242.4 1.7557e-17 4438560000.0 3115610.0 3921560.0 4058380.0 3489570.0 2630210.0 2986540.0 3550090.0 2875940.0 5177440.0 3492410.0 False True 3098835.901936811 4052086.7539669164 4629764.627928678 3931349.2042063233 2965151.6530239345 2780087.519358954 3378358.5840392127 3090557.2465274152 3901529.2861416056 3269521.403797371 0.9477949581053918 1.23935165228178 1.4160374122498354 1.2024234493893435 0.9069069404409075 0.8503041197803549 1.0332884134403995 0.945262888610517 1.1933028735062545 1.0 21.64064803718777 3.274024749369504 9.969620220096555 0.979613546441359 1.219823274499368 0.3667407648180496 0.1361330427528042 0.40434761676581416 109.48693437058712 0.03832111080339223 0.05162875026964156 1879.4239174770667 -3.274024749369504 0.240209728058009 DCDHADEQK ddPTM_BT-474_Trastuzumab_2h_R1 5 DCDHADEQK 9 0 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;;; 195.79 3.0703e-05 5815210000.0 14273230.0 10447060.0 9395160.0 7808080.0 8756930.0 7643830.0 11149310.0 11397210.0 16151590.0 11683730.0 False True 14196384.515584925 10794784.076718867 10717916.863805363 8796582.127419522 9872073.129109442 7115430.023740368 10609975.280799706 12247727.684059715 12171247.064717675 10938064.348455492 1.2978881878300088 0.9869007653299409 0.9798732684653464 0.8042174416958556 0.9025429742057997 0.6505200369154074 0.9700048329207247 1.1197344698186158 1.1127423168283257 1.0 23.382854118798914 1.8643425176404735 5.453372369212966 1.0858043843521725 0.9245913481857142 0.13364437982557809 0.15689774899643164 0.4202582113062145 16.37385882252122 0.07408327376509638 0.0438656087614333 73.17159427884056 -1.8643425176404735 -0.16121303616645832 DCDLQEDACYNCGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DCDLQEDACYNCGR 14 0 P62633-2;P62633;P62633-7;P62633-3 P62633-2 CNBP Cellular nucleic acid-binding protein 0 ;;; 300.78 1.7313999999999994e-43 3273370000.0 1846200.0 1725960.0 1689520.0 1502060.0 1470030.0 1833480.0 1693590.0 1695030.0 2013360.0 1818080.0 False True 1836260.2643321012 1783407.5352351472 1927389.7304289024 1692220.641990317 1657229.6069495522 1706735.843147677 1611664.5815579253 1821521.7457879372 1517194.405641798 1702048.5778634024 1.0788530293519447 1.0478006082963127 1.132394078227998 0.9942258194032144 0.9736676311729529 1.002753896301925 0.9468969349753008 1.0701937473926335 0.8913931278896554 1.0 20.698840782636243 3.6640876074420263 8.365129251775533 0.988623638289121 1.0823604372847793 0.5014324907941049 0.0470484955149569 0.2870122049036226 29.89691942324866 0.011992131197960273 0.018616976216746687 4614.10642584363 -3.6640876074420263 0.09373679899565823 DCDPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 DCDPGSPR 8 0 Q00341;A0A024R4E5;Q00341-2;H0Y394 Q00341 HDLBP Vigilin 1 DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR 107.55 0.0041755 1358415000.0 3586826.0 3763955.0 3296535.0 3342219.0 3325990.0 3025814.0 3524552.0 3265879.0 4358380.0 3662552.0 True False 3567514.927349831 3889235.9668161497 3760658.474004121 3765343.582714566 3749535.1118127755 2816646.6001800057 3354055.954663848 3509595.474777535 3284315.648299906 3428804.795691472 1.0404543681905303 1.1342832848645221 1.0967840685272157 1.0981504655633876 1.093539975365271 0.8214660116316085 0.9781997385440108 1.0235623442861437 0.9578602002735395 1.0 21.709274342275428 2.9292610193029667 24.99982123231838 0.9642236156487386 1.095736744498542 0.6063970189371819 0.054740746117913255 112.41838576573905 39729.405937656775 0.016990406555353322 0.018021054619898697 849.6910021716335 -2.9292610193029667 0.13151312884980337 DCDVQGLEHDMEEINAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DCDVQGLEHDMEEINAR 17 0 A0A0A6YYJ5;H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5 A0A0A6YYJ5;H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 0 108.49 0.0014709000000000002 0.0 18044.0 24689.0 21105.0 23601.0 18538.0 24671.0 22192.0 20603.0 30843.0 28562.0 False True 17946.853108876865 25510.758440184338 24076.400552051477 26588.884180134948 20898.704416665492 22965.551839287196 21118.488178327367 22140.50047991415 23242.155925025792 26739.14870684154 0.6711826657475053 0.9540602328022917 0.9004176167318009 0.9943803548738952 0.781577029463107 0.8588737095213198 0.7897965791605004 0.8280181513126942 0.8692182454963123 1.0 14.706665914690205 DCEAEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DCEAEVR 7 0 P30153;B3KQV6;C9J9C1;P30154-4;P30154;P30154-2;P30154-3;P30154-5;H0YDG7 P30153 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 111.65 0.015194999999999997 416640000.0 911920.0 1047600.0 897680.0 893490.0 906040.0 985990.0 1044800.0 930390.0 1298500.0 956900.0 False True 907010.3240438366 1082468.7327124267 1024065.5412255658 1006605.7423884074 1021418.8234801827 917830.8320708039 994259.0324764082 999820.4262246907 978502.0740085586 895829.8227566939 1.0124806084851445 1.2083419252346363 1.1431474094870588 1.1236573251053732 1.1401929222863108 1.024559362453917 1.1098748972397712 1.1160829890078805 1.092285665370529 1.0 19.772865169684913 2.836809171945157 21.323184333254023 1.0823708610105263 1.131034849077621 0.17792162835851055 0.05695191911722426 25.267058923732044 5474.952934322171 0.016676149370464136 0.017687882896019646 686.766609946196 -2.836809171945157 0.04866398806709471 DCEQAENWMAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCEQAENWMAAR 12 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 152.69 0.0001629 831440000.0 329280.0 414470.0 413900.0 403740.0 403100.0 416000.0 436390.0 321670.0 346840.0 406920.0 False True 327507.1930664476 428265.38339759404 472173.5223167075 454853.4426036052 454432.39563911245 387242.89915866725 415280.1485283111 345674.6488071635 261365.9294178892 380950.01721826073 0.8597117161404572 1.1242036068795465 1.2394631867050983 1.19399769535383 1.1928924402141472 1.016518917590181 1.0901171538479846 0.9074015833660231 0.6860898217735024 1.0 18.539242194880472 1.671829734955812 3.058152598366538 0.8300572879849722 1.1148852653436434 0.4389091168026622 0.12380265149484027 0.1824320253527571 3.950364145615384 0.07620049497260119 0.03339142956476681 46.970992284353635 -1.671829734955812 0.28482797735867116 DCFGCLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DCFGCLR 7 0 O75531 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed 0 ;;;;; 137.44 0.0067063 9488590000.0 6350440.0 7711470.0 7126940.0 6588240.0 5699930.0 6509570.0 6443450.0 5902340.0 8832200.0 6823850.0 False True 6316249.936640207 7968141.617267941 8130351.203527009 7422310.508492527 6425782.299368012 6059578.747779525 6131755.707130658 6342802.582275219 6655622.655416558 6388346.050808092 0.9887144319367663 1.2472933610507861 1.272684845007506 1.1618516669981651 1.0058600846388377 0.9485363973063138 0.959834620473483 0.9928708513642414 1.0418381538011168 1.0 22.60701103364856 3.2389285738097326 4.439736903702259 0.9855340246951447 1.1833291220234028 0.5717260298355236 0.07448845529669992 0.1325386273652003 6.303476073389394 0.021468293983537397 0.027720852615332456 1733.5188713333253 -3.2389285738097326 0.19779509732825806 DCGATWVVLGHSER ddPTM_BT-474_Trastuzumab_2h_R1 6 DCGATWVVLGHSER 14 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3;U3KPS5 P60174 TPI1 Triosephosphate isomerase 0 ;;;;; 210.14 5.657600000000001e-09 6030980000.0 4469870.0 5262560.0 4213030.0 4324610.0 3858570.0 5130470.0 4424270.0 3910130.0 5597280.0 4756770.0 False True 4445804.716569248 5437721.128315308 4806188.00368678 4872105.182587744 4349936.017963808 4775812.6847273195 4210251.157747316 4201923.755837828 4217905.343709378 4453188.866124319 0.9983418287934647 1.2210847758289316 1.07926884490522 1.0940710868227814 0.976813728035215 1.0724478184739075 0.9454463496428268 0.9435763634015435 0.9471651597342395 1.0 22.086407369167603 2.957972225649415 0.9522354780372461 0.9546480804212346 1.1149100795425608 0.447986091781429 0.06260927247800223 0.4312584383779069 0.8539318464671924 0.030421320073377472 0.03607042034415524 907.7624743647131 -2.957972225649415 0.16026199912132622 DCGVGFR ddPTM_BT-474_Trastuzumab_2h_R1 3 DCGVGFR 7 0 E9PPJ5;E9PLM6;P21741 E9PPJ5 MDK Midkine 0 ;; 122.15 0.010163 1559750000.0 1713120.0 1758940.0 1669630.0 1696240.0 1524510.0 1794940.0 1898450.0 1659760.0 2093380.0 1869420.0 False True 1703896.7522655271 1817485.254598318 1904699.391315883 1910983.8100805932 1718647.3120212941 1670860.0226342736 1806614.7207167263 1783619.7192905047 1577494.548854863 1750112.0151090145 0.9735929686531473 1.0384965298836069 1.0883299896648269 1.0919208562553397 0.9820213204548737 0.9547160457213338 1.0322851938161182 1.0191460340208012 0.9013677611696191 1.0 20.739015833364913 3.2156518832407084 24.991114001078238 0.9872553438994621 1.0502748292120376 0.3325766503754566 0.04568526530269594 295.76038614448635 322643.6628345971 0.013763842919137223 0.016461644252323476 1643.054174827317 -3.2156518832407084 0.06301948531257551 DCHEEVYAGSHQYPGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DCHEEVYAGSHQYPGR 16 0 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 0 ;;;;; 248.67 1.1058e-20 3173820000.0 634116.0 818453.0 683736.0 740332.0 729307.0 785789.0 716380.0 97920.1 780857.0 405384.0 False True 630701.9899129104 845694.7133397141 780000.0856601491 834057.9552920491 822179.9235087428 731469.2559783414 681725.9625626423 105227.39509019272 588425.25529773 379512.0460532966 1.6618760760609377 2.2283738345974644 2.055270955880568 2.1977114138161467 2.166413245795314 1.9273940408089654 1.796322329296774 0.27727023736004197 1.5504784668023284 1.0 18.533786153241035 1.9144415700863535 6.451254662109405 0.890126362280046 2.046337338183862 0.6948046159383916 0.32531836248172114 0.1178233151111501 7.336360825118222 0.13377490223111108 0.08215531333959455 82.11860631538512 -1.9144415700863535 1.1562109759038162 DCKEPK ddPTM_BT-474_Trastuzumab_2h_R1 4 DCKEPK 6 1 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;; 79.469 0.061166 2371350000.0 3053380.0 2101120.0 1887880.0 1515470.0 1902850.0 1721920.0 2608270.0 2540690.0 4237630.0 2831860.0 False True 3036940.94134241 2171054.5090461387 2153677.0942528746 1707328.346615362 2145166.668424425 1602887.7233636817 2482098.0155410017 2730289.189162408 3193322.867832802 2651128.2703226763 1.145527726945017 0.8189171883342685 0.812362464072983 0.6440006565233293 0.8091523493743782 0.6046058733961559 0.9362421438925317 1.0298593318648053 1.2045146602597745 1.0 21.338175043558604 1.8135991892173826 2.758239126100145 1.0959553304861644 0.7992189118201223 0.4070490268292283 0.1453892448090997 0.2455844653158986 3.4876088858315026 0.0831986350541874 0.040611097278894004 65.10272830335167 -1.8135991892173826 -0.29673641866604217 DCLADVDTKPAYQNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCLADVDTKPAYQNLR 16 1 Q8NFC6;Q96IK1-2;Q96IK1 Q8NFC6 BOD1L1;BOD1 Biorientation of chromosomes in cell division protein 1-like 1;Biorientation of chromosomes in cell division protein 1 0 ; 179.14 2.439e-09 783390000.0 753980.0 744040.0 681480.0 672550.0 638630.0 787980.0 755830.0 743360.0 963340.0 800470.0 False True 749920.6554550526 768804.9216183225 777426.4604696532 757694.7610418949 719955.7450434291 733508.7973054 719267.6153490082 798833.2979055952 725937.7650946522 749383.3192831533 1.000717037807051 1.0259167796178699 1.037421624507636 1.0110910418538435 0.9607309457223119 0.9788165527984549 0.9598126844310423 1.0659875625063884 0.9687135360699932 1.0 19.515344339139723 5.139748816419912 16.347547196827318 1.004023706548894 0.36579368900209536 0.0 0.033483534613122444 3405.0535995388955 321863.6676809345 0.008089766649931503 15620.350376274098 137958.61204267433 -5.139748816419912 -0.6382300175467985 DCLHGIEAK ddPTM_BT-474_Trastuzumab_2h_R1 6 DCLHGIEAK 9 0 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 ;;;;; 150.35 8.5449e-05 4325830000.0 10590900.0 10262690.0 8959850.0 8586090.0 8555970.0 11151910.0 10937070.0 10525260.0 14938330.0 11118510.0 False True 10533879.771159602 10604277.432722887 10221318.99958769 9673088.113648359 9645522.06429268 10381004.710472435 10408002.140435243 11310708.347387338 11256978.734866595 10408917.17276469 1.0120053408362093 1.018768547843705 0.9819771672630985 0.9293078187766106 0.9266595078237858 0.9973184086462624 0.9999120914967177 1.086636406040603 1.0814745230484577 1.0 23.31131665881082 1.9252077254233806 3.625760929786037 1.063751038979561 0.9761306335105008 0.47529993688283845 0.03638617192324595 0.19823472592786961 4.692967683015859 0.01894874683048089 0.010737316676143974 84.17976817991513 -1.9252077254233806 -0.08762040546906025 DCLIEDS(ph)DDEAGQS ddPTM_BT-474_Trastuzumab_2h_R1 2 DCLIEDSDDEAGQS 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;H3BPG4 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 DCLIEDS(1)DDEAGQS;DCLIEDS(1)DDEAGQS 227.47 2.1177e-12 497380000.0 624050.0 681360.0 602930.0 583300.0 634720.0 722420.0 694070.0 622600.0 796550.0 735670.0 True False 620690.1841384728 704038.6557091816 687817.3032384935 657145.7201929041 715547.8297198155 672480.8057937596 660495.1824951187 669061.5734987403 600250.9257231557 688718.910761226 0.9012242504746057 1.022243827937036 0.9986908918738184 0.9541566376717829 1.0389548167465537 0.9764227397944995 0.9590199603566683 0.9714581130918 0.8715470365983004 1.0 19.393555765357746 -0.8239234075347044 4.908168934075326 1.0000000365417052 0.9705221936058567 0.03559301812401727 0.048151571879516554 2.5067041396021865e-08 5.913609703832919e-09 0.044268889849614926 0.010434259677712743 0.14999493442467737 0.8239234075347044 -0.02947784293584854 DCMEHAVLPVDGATLAEVMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCMEHAVLPVDGATLAEVMR 20 0 K7EIG1;A0A494C0R8;O75153 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ; 142.97 1.7328e-07 157920000.0 295961.0 327560.0 313729.0 340467.0 335290.0 324760.0 300455.0 285644.0 335630.0 355660.0 False True 294367.57886035834 338462.6365857986 357899.3162186475 383570.0872911316 377987.19408047135 302310.1056028093 285920.8438004392 306960.2057508416 252918.48371158462 332961.47430415486 0.8840890060195323 1.0165219183184493 1.074897079208967 1.1519954015483083 1.135228016605868 0.9079431974362714 0.8587205003160672 0.9219090778966171 0.7596028466661212 1.0 18.34499573267707 2.621914797573841 6.019638840930186 0.8828942554938826 1.0568303493344848 0.45960598261228613 0.08841968984864038 0.2137445497636677 9.828621398495 0.02957827729735259 0.027806404366626646 418.7114118110044 -2.621914797573841 0.17393609384060227 DCPDSAEEYER ddPTM_BT-474_Trastuzumab_2h_R1 2 DCPDSAEEYER 11 0 Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576;A0A0G2JR96 CYFIP1 Cytoplasmic FMR1-interacting protein 1 0 ; 195.79 1.4587e-07 544790000.0 262350.0 304480.0 289220.0 292400.0 285970.0 292860.0 292080.0 265730.0 278440.0 299620.0 False True 260937.536749825 314614.4327379531 329939.6620546946 329417.8100195526 322386.5844230136 272615.2775182865 277950.9745460458 285560.1219495987 209822.1929048468 280497.99508241226 0.9302652472548324 1.1216280980743452 1.1762638872258464 1.1744034388651061 1.1493365017753308 0.9718974192246551 0.9909196479795939 1.0180469270937182 0.74803455491081 1.0 18.09763093334575 2.6847542359642116 5.83727038886666 0.9553179313411241 1.1181625927318877 0.41842187207238857 0.09653697824308209 0.2250601291626622 17.465450609527753 0.03177827904197253 0.03015401225081464 483.89845553135336 -2.6847542359642116 0.1628446613907636 DCQIAHGAAQFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCQIAHGAAQFLR 13 0 P30876;C9J2Y9;C9J4M6 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2;DNA-directed RNA polymerase 0 ; 136.33 7.362800000000001e-05 817720000.0 819030.0 944740.0 865310.0 882390.0 782760.0 928740.0 961360.0 827710.0 1063590.0 899490.0 False True 814620.4334827873 976185.0997926111 987138.1265906501 994100.4835265143 882439.8462179896 864538.3898188004 914855.3440481607 889477.9232262158 801482.4958758288 842083.7781078668 0.9673864461719134 1.1592493825092622 1.1722564336872934 1.1805244434944748 1.047924053590964 1.0266655317376951 1.0864184393906853 1.0562819832782457 0.9517847472097519 1.0 19.683604247215563 3.1132548335912698 7.406723598766438 1.0354744144710921 1.1261398560955795 0.3167293405115855 0.06540062866426342 0.28609109601592875 17.524501726354966 0.01908770687324682 0.022876886813740463 1297.9406480418315 -3.1132548335912698 0.09066544162448742 DCQIDQHHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCQIDQHHR 9 0 P10588 P10588 NR2F6 Nuclear receptor subfamily 2 group F member 6 0 ; 61.65 0.050763 75000000.0 52408.0 56720.0 55137.0 56647.0 56062.0 59454.0 58313.0 38636.0 72734.0 54318.0 False True 52125.84115107617 58607.89091203593 62899.81034060469 63818.50439185223 63201.163394492476 55344.08491966201 55492.17741270746 41519.214509632715 54809.68028566703 50851.37873602053 1.0250624947982556 1.152532976859506 1.2369342170077615 1.2550004735003664 1.2428603700714211 1.0883497418420844 1.0912620029592162 0.8164815889293207 1.0778405944545737 1.0 15.633999270026601 2.153086699480378 2.398038557171424 0.9483197343314806 1.182768279517174 0.47736158981988164 0.09219298410946833 0.22007706756075304 2.5284858498800054 0.04390745095094457 0.028075082626520323 142.26127591317044 -2.153086699480378 0.23444854518569325 DCQLNAHK ddPTM_BT-474_Trastuzumab_2h_R1 8 DCQLNAHK 8 0 Q13263;Q13263-2;M0R3C0;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;;;;;; 156.01 0.00039986 16510470000.0 13538388.0 13699088.0 13238310.0 11504007.0 9757853.0 12725111.0 13624183.0 11700911.0 19169949.0 13143861.0 False True 13465498.8232643 14155053.862806413 15102148.97854673 12960413.106667573 11000457.740224013 11845454.028259248 12965129.218856722 12574092.394842155 14445771.933106126 12305008.537954437 1.0943104006576156 1.150348967182393 1.2273172287499514 1.0532632355915528 0.8939821298208307 0.9626530523503737 1.0536465032808522 1.021867831790424 1.1739749621910922 1.0 23.55274232303648 3.5428859162042703 7.247548303482451 1.0152572099956934 1.1549061763825024 0.42237580920502416 0.07305855891189825 0.2646071066657851 25.430652906885207 0.020196246823116815 0.031230378258278582 3490.4861267562487 -3.5428859162042703 0.13964896638680901 DCQLNAHKDHQYQFLEDAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCQLNAHKDHQYQFLEDAVR 20 1 Q13263;Q13263-2;M0R3C0;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 200.29 8.8576e-22 1259660000.0 638130.0 865810.0 823480.0 1003230.0 917590.0 895890.0 964300.0 254011.0 1422020.0 834190.0 False True 634694.3789829077 894627.9624568033 939418.8261835283 1130238.8151365102 1034439.647517969 833959.2329982168 917653.1250162708 272966.5906617226 1071582.2250917621 780951.2800140092 0.8127195578340332 1.1455618107710315 1.202916046397512 1.447259059638439 1.3245892208530763 1.0678761330454016 1.1750452921977532 0.34953088322849785 1.3721499055261672 1.0 19.57487302245245 1.9314383079845945 24.999972391320906 0.8167858193558439 1.181920777777531 0.12724380101131305 0.28322448121021976 232.1367527385924 84644.23715302176 0.11446221607099472 0.07387235847320216 85.39615326143966 -1.9314383079845945 0.365134958421687 DCSPSS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DCSPSSPLK 9 0 Q9Y485;F5H269 Q9Y485 DMXL1 DmX-like protein 1 1 DCS(0.004)PS(0.368)S(0.628)PLK 163.84 6.5785e-05 353240000.0 1183300.0 920570.0 871810.0 704050.0 744510.0 1162100.0 1079700.0 962980.0 1368500.0 968560.0 True False 1176929.2442769902 951210.6159536839 994553.2700916372 793182.6578121268 839318.9354435024 1081766.762289151 1027470.7861454606 1034842.4575133591 1031251.5119605024 906745.6715740659 1.297970623045709 1.0490379450088017 1.0968381777496015 0.8747575893416736 0.9256387559992274 1.1930211482689046 1.1331410982771186 1.141270909754577 1.1373106531297805 1.0 19.790338427823947 2.7139002365992533 24.97648770683727 1.131506679628503 1.0418534696878234 0.08497501736259794 0.11458951660445094 1709.3388672522667 1731247.4824141387 0.03806786214049452 0.035904881646469156 517.4879442156155 -2.7139002365992533 -0.08965320994067949 DCTSALALVPFSIKPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DCTSALALVPFSIKPLLR 18 1 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 0 ; 189.81 2.8133e-14 492250000.0 737580.0 999000.0 823520.0 925420.0 849740.0 987020.0 903030.0 960780.0 1416850.0 1030740.0 False True 733608.9512328414 1032251.1110917467 939464.4578358402 1042578.0771145495 957949.3521964267 918789.6305951626 859346.9889904002 1032478.2823419862 1067686.3023173104 964957.2907390897 0.7602501771564918 1.0697376153312594 0.9735813873340199 1.0804396081778995 0.9927375660975675 0.9521557476304823 0.8905544289242072 1.0699730363726048 1.106459646001055 1.0 19.880105564172478 4.746661308258505 24.897187206163483 1.0122528137742688 0.7602500464912527 0.5897154454793371 0.06372527607586968 706.2404969945009 2170552.3398572295 0.015587631474528383 0.17378760711087693 55803.48322943128 -4.746661308258505 -0.25200276728301607 DCVGPEVEK ddPTM_BT-474_Trastuzumab_2h_R1 5 DCVGPEVEK 9 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;;;; 111.17 0.0050453 2395060000.0 3510300.0 3161620.0 2650420.0 2549670.0 2601500.0 4156000.0 3644420.0 3131310.0 4562180.0 3759450.0 False True 3491400.934830995 3266852.6104603517 3023576.0981363757 2872457.9605764444 2932785.6047014366 3868705.5021716887 3468125.4815636207 3364984.2526699947 3437891.86907999 3519518.682372924 0.9920109111274921 0.928210049522391 0.8590879523610954 0.8161507921417768 0.8332916712134338 1.0992143674496242 0.9853976621670743 0.9560921695125826 0.9768073930956094 1.0 21.746946713518266 2.7567275938756657 24.99183595633115 0.9956034360591072 0.8827612735331674 0.5006447234608469 0.05849688391885241 786.5460297670171 1082029.4536464985 0.019342212205136093 0.020479136822379354 571.1202957884054 -2.7567275938756657 -0.11284216252593982 DDAFAEWTEMAHER ddPTM_BT-474_Trastuzumab_2h_R1 2 DDAFAEWTEMAHER 14 0 E9PKJ0;E9PJW4;E9PQK1;H0YCG9;E9PM62;Q5T9L3-3;Q5T9L3;Q5T9L3-2 E9PKJ0 WLS Protein wntless homolog 0 ; 192.65 3.4962e-07 65982000.0 92602.0 128032.0 135755.0 91621.0 119485.0 164861.0 119506.0 101470.0 132768.0 127204.0 False True 92103.44112104937 132293.4677230216 154868.12399638706 103220.20920588725 134700.70650691958 153464.54711105055 113725.03822274655 109042.20665421964 100049.10540005259 119085.73181517649 0.7734212967175262 1.110909474262994 1.3004758977905564 0.8667722625753952 1.1311238084842763 1.2886896252964266 0.9549845853846718 0.9156613894219955 0.8401435157263917 1.0 16.86164104236087 4.747556063882725 23.840656725572096 1.0451462829165075 0.7734210218932432 0.21932403682596224 0.15394823764538015 1018.9834723180827 2700499.758021108 0.038393077018781974 0.4500524928132699 55918.57092350636 -4.747556063882725 -0.2717252610232642 DDAT(ph)PVRDEPMDAESITFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DDATPVRDEPMDAESITFK 19 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK 240.43 4.1013e-24 3733290000.0 3818670.0 2906970.0 2715020.0 2303920.0 2491130.0 3414000.0 3016500.0 3136720.0 4309790.0 3130900.0 True False 3798110.7050141213 3003726.7391495253 3097271.2166231126 2595596.0357737625 2808360.63941568 3177998.2156915604 2870580.3708509593 3370797.9743414177 3247700.0027272594 2931083.2815016555 1.2958044314142687 1.0247838258661326 1.0566984691872403 0.8855415511919484 0.9581306191944494 1.084240163269399 0.9793581741492862 1.1500178093249152 1.1080203770475585 1.0 21.483002529539448 4.739460259384239 24.313162805756342 1.031443099265049 1.295804548427616 0.5461158857301454 0.0733193301875045 42.99142555657782 1161585.1339037195 0.01892861707678 0.11437394246069443 54885.832939676606 -4.739460259384239 0.264361449162567 DDAVANLTQLIGGAQELHAYSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDAVANLTQLIGGAQELHAYSVR 23 0 O75843 O75843 AP1G2 AP-1 complex subunit gamma-like 2 0 138.49 3.4436e-06 78414000.0 47835.0 50874.0 46682.0 49028.0 52367.0 53793.0 54201.0 43775.0 68516.0 61477.0 False True 47577.46167496812 52567.31033601756 53254.41983278209 55234.93977304589 59035.62704647332 50074.41652510143 51579.09056207286 47041.71278494599 51631.149867362714 57553.485226892306 0.8266651704480477 0.9133645013639431 0.9253031266975046 0.9597149426362965 1.0257524251352979 0.87005011647329 0.8961940420937728 0.8173564572066156 0.8970985799351325 1.0 15.81261567484542 -0.8305768112943124 9.73287019986524 0.9999999999999972 0.9021212616038143 0.201070295737533 0.05764817201767678 0.0 0.0 0.060642497999587125 0.014293573854533236 0.14771452038760594 0.8305768112943124 -0.09787873839618288 DDAYWPEAK ddPTM_BT-474_Trastuzumab_2h_R1 5 DDAYWPEAK 9 0 Q15424;Q15424-3;Q15424-4;Q15424-2;K7EII0 Q15424 SAFB Scaffold attachment factor B1 0 ;;;; 160.56 0.00015168 1000748000.0 3009000.0 2657570.0 2462590.0 2275540.0 2328730.0 3037400.0 2909410.0 2876110.0 4046330.0 3053140.0 False True 2992799.8783313297 2746025.610915007 2809301.2667840044 2563623.130683627 2625279.9620358986 2827431.687270519 2768670.7232744857 3090739.9327906547 3049166.189544133 2858285.991275341 1.047061031494602 0.9607245808491528 0.9828622032081962 0.8969092450891389 0.9184805054670274 0.9892053125198101 0.9686472003590971 1.0813263411096226 1.0667813503797159 1.0 21.44671884459357 1.7686695445588891 10.363740638492285 1.0554479413036386 0.9630380633889182 0.43752124472691933 0.042902167130229533 0.22457461286559122 72.95701137929528 0.020336795549935904 0.011273249815592898 58.70425008667236 -1.7686695445588891 -0.09240987791472044 DDDDIDLFGS(ph)DDEEESEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDDDIDLFGSDDEEESEEAKR 21 1 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR 316.24 6.336599999999999e-67 1927180000.0 2766100.0 1555690.0 1357840.0 1218880.0 1310020.0 1858510.0 1797810.0 1845730.0 2750900.0 1815630.0 True False 2751207.6249426026 1607470.2012155352 1549012.0694431462 1373190.0830254168 1476843.281903125 1730035.578161958 1710843.0619988618 1983467.7450270315 2072977.5551714662 1699754.9389609536 1.6185907520435818 0.9457070336257818 0.9113149395465471 0.8078753304666594 0.8688565910600662 1.0178147087600256 1.0065233656827532 1.1669139471596472 1.2195743678430848 1.0 20.696895331080785 -0.12779003177566073 7.989085115586692 0.9999764911147234 1.046337545245604 0.002338541722029963 0.22161756262785404 0.0 0.0 0.21295137668257527 0.05019312083841995 0.7450921163044548 0.12779003177566073 0.04636105413088065 DDDDSIADFLNS(ph)DEEEDRVSLQNLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDDDSIADFLNSDEEEDRVSLQNLK 25 1 Q15649-2;Q15649 Q15649-2 ZNHIT3 Zinc finger HIT domain-containing protein 3 1 DDDDSIADFLNS(1)DEEEDRVSLQNLK 159.1 1.4478e-11 30951000.0 37157.0 27103.0 21174.0 19877.0 22001.0 30587.0 31297.0 30387.0 39518.0 30979.0 True False 36956.95084053081 28005.106970890523 24155.115152292703 22393.426161965286 24802.696939856392 28472.59268405326 29783.04454384967 32654.632242059466 29779.31841407028 29001.89369754374 1.2742944038740756 0.9656302882477762 0.8328806182176468 0.7721366885729208 0.8552095666069216 0.9817494326746219 1.0269344772604312 1.1259482771231966 1.0268059984163167 1.0 14.823859484577886 2.2984493143332343 2.9682479261487433 1.0652724052146385 0.9262117994970246 0.11413850332590014 0.1307417143918967 0.46708530689381433 8.41910802888277 0.05468830555509966 0.04186585871724076 198.81507636361007 -2.2984493143332343 -0.13906060571761392 DDDHNGHIDFITAASNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DDDHNGHIDFITAASNLR 18 0 A0AVT1;A0AVT1-2;H0Y9U5 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ;; 249.0 7.992299999999998e-25 1362570000.0 1571610.0 1506850.0 1495590.0 1401870.0 1366450.0 1599870.0 1641810.0 248658.0 1841940.0 1011735.0 False True 1563148.6263822871 1557004.5913399404 1706156.0720986808 1579346.5982630325 1540459.3079163118 1489274.7525888847 1562389.377976733 267214.1226197392 1388018.5677314806 947165.2061100877 1.650344223265951 1.6438574615028374 1.8013289139976882 1.6674457508307872 1.6263892486536993 1.5723495151444449 1.6495426224463092 0.2821198676809094 1.465445055178846 1.0 19.85325655931583 1.7695437221915369 24.999999999999996 0.849082412300552 1.659428994217856 0.603257651021454 0.2744854517333034 14.640185271462316 11819.23530775315 0.11696030610278939 0.06487578592190844 58.82253301982173 -1.7695437221915369 0.8103465819173039 DDDKHVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDDKHVMR 8 1 Q96CT7;M0R2F5 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 0 102.61 0.0029635 97872000.0 252960.0 223720.0 236330.0 214610.0 199250.0 218630.0 247010.0 252010.0 363080.0 275090.0 False True 251598.09146649786 231166.38495840397 269603.2097828158 241779.6039955408 224623.30645272424 203516.62269966205 235061.18263016583 270816.26588085067 273603.79902273987 257533.52068360176 0.9769527896743353 0.8976166844020601 1.0468664780692472 0.9388277042683861 0.8722099781670362 0.7902529432263565 0.9127401435207931 1.051576762364724 1.0624007247541247 1.0 17.974400700816453 1.7363347565524418 6.415636596982274 1.041852197834744 0.9172829394771369 0.41318650076540675 0.06461307226159567 0.14356158084636494 16.242279201685946 0.03486641066672621 0.018217758802359346 54.49225202506291 -1.7363347565524418 -0.12456925835760702 DDDKNNDGYIDYAEFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDDKNNDGYIDYAEFAK 17 1 Q8NI22-2;Q8NI22-3;Q8NI22 Q8NI22-2 MCFD2 Multiple coagulation factor deficiency protein 2 0 ; 250.47 2.3483e-21 1333910000.0 2587000.0 1939130.0 1754580.0 1452410.0 1508650.0 2363700.0 2250000.0 2323100.0 4087300.0 2124100.0 False True 2573071.8794427225 2003672.7698211605 2001609.612917248 1636284.9570810494 1700767.6350308782 2200302.9825512995 2141158.90416531 2496461.5184627743 3080039.6820140043 1988538.1194664962 1.2939514984671507 1.0076109430372524 1.0065734185946904 0.8228582299041104 0.8552854070945224 1.106492735045792 1.0767502434098473 1.2554255279413746 1.5488964741799098 1.0 20.923276787609193 1.8434795773794228 2.2571645715190747 1.3058321707604674 0.9997121939440679 0.291395076406494 0.17410007478761846 0.32765391001859767 3.1290792479464016 0.10520781792537663 0.04961776956134833 69.73962011786186 -1.8434795773794228 -0.3061199768163996 DDDLVEFS(ph)DLES(ph)EDDERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDDLVEFSDLESEDDERPR 19 1 Q9HCK8-2;Q9HCK8;H0YJG4;A0A2R8Y840 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 2 DDDLVEFS(1)DLES(1)EDDERPR 117.43 5.6307e-05 213260000.0 207540.0 186000.0 121780.0 159440.0 126710.0 149020.0 151120.0 168920.0 235340.0 165410.0 True False 206422.6276998615 192190.89756062583 138925.56546926452 179625.08765224856 142845.76743098954 138718.59815534766 143809.74826553842 181525.6681583797 177343.61039443553 154853.39218537443 1.3330197342577665 1.2411151919136187 0.8971425392022232 1.159968697600244 0.9224581096679457 0.8958060020363527 0.9286832289303957 1.172242116214516 1.1452355540402896 1.0 17.240543461165338 4.38891828144515 5.75364220750821 1.0227960415439776 1.31125202458049 0.5277199158023411 0.10411613573710905 0.15060597183110155 7.53560224159167 0.026977383414451238 0.07704193151392222 24486.02459842238 -4.38891828144515 0.2884559830365123 DDDRTPGLHGDCDDDKYR ddPTM_BT-474_Trastuzumab_2h_R1 3 DDDRTPGLHGDCDDDKYR 18 2 O95159 O95159 ZFPL1 Zinc finger protein-like 1 0 ;; 179.78 4.9192e-14 5735370000.0 3680860.0 3695180.0 3044810.0 2906250.0 2899070.0 4197570.0 3740650.0 3391640.0 5758140.0 3629330.0 False True 3661042.6587419887 3818171.8325165194 3473492.7820370495 3274180.952015473 3268249.380365871 3907401.8659169376 3559700.468829323 3644741.3991989493 4339123.552122948 3397703.05217426 1.0775051858634945 1.1237508910830782 1.0223061664598059 0.9636454103663525 0.9618996510817657 1.1500127603607122 1.0476785093245267 1.0727074565467412 1.2770755670794285 1.0 21.696128340658657 2.7267136894776716 24.92192159189063 1.1053171798579569 1.03094579638418 0.190292997343404 0.08193160595994815 1391.745108755848 2927753.6416138113 0.027030130954918512 0.025668183962804982 532.9834080152852 -2.7267136894776716 -0.07437138347377692 DDDSNFHMDFIVAASNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DDDSNFHMDFIVAASNLR 18 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 284.5 1.5162e-39 1157615000.0 1422757.0 1447613.0 1281149.0 1147136.0 1161128.0 1466729.0 1370341.0 1285763.0 1652293.0 1440509.0 False True 1415097.0343951639 1495795.9236044623 1461523.6432532677 1292363.299981497 1308990.7682551509 1365337.4765386856 1304052.3706190218 1381713.1640322215 1245107.5297418765 1348574.482338199 1.049328051900868 1.1091681944114844 1.0837544847498777 0.958318073571108 0.9706477361084153 1.0124301582300612 0.9669857970010056 1.02457311934048 0.923276797869608 1.0 20.363003773754567 3.747351747984119 24.86294775726386 0.9832186319650188 1.083592049797898 0.6971026199786776 0.030508855968773996 313.8606601881439 887653.6012882391 0.007527020260724516 0.013311704336955369 5589.226995382067 -3.747351747984119 0.10037341783287912 DDDVPLMWR ddPTM_BT-474_Trastuzumab_2h_R1 5 DDDVPLMWR 9 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ;;;; 209.37 1.9828e-05 1527618000.0 1216771.0 1267702.0 1146010.0 1136906.0 1047817.0 1314101.0 1302442.0 1199690.0 1579324.0 1209250.0 False True 1210220.0401319668 1309896.6947279598 1307358.246702512 1280838.183030401 1181250.2840520667 1223260.29093102 1239437.9046483897 1289216.959702383 1190120.762057369 1132074.6297089886 1.069028497214063 1.1570762742600125 1.1548339768364757 1.13140790316947 1.0434385269774302 1.080547393987154 1.0948376300659612 1.1388091614011255 1.0512741217098929 1.0 20.110537637354472 3.291228904066679 16.893426634337544 1.0816620958334926 1.1320731218627582 0.29761500570104693 0.04196674037447525 6.538654092113364 2095.6970992008487 0.011712871914632168 0.01585857427197505 1955.369803115122 -3.291228904066679 0.050411026029265615 DDDWGNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDDWGNIK 8 0 P54578-2;P54578 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14 0 ; 129.56 0.0025249 360780000.0 1004110.0 716290.0 555480.0 537150.0 550760.0 782480.0 682290.0 725930.0 1002190.0 764980.0 False True 998703.9833271086 740131.2796435516 633686.7556812859 605153.1349247693 620896.0213897238 728388.9993597923 649285.0260990895 780102.5827978494 755213.703157981 716158.3214676721 1.3945296080347098 1.0334743833273488 0.8848417126294481 0.8449990969658604 0.8669815078281562 1.0170781760477976 0.9066221904235721 1.0892878842755496 1.0545345638241974 1.0 19.449919034478167 4.719524316666308 3.4609787299562087 0.9599871916951715 1.4397114855159283 0.734512431845874 0.07828811609612198 0.15321363320184306 3.2049713376634013 0.021218724666820864 0.18776313524866428 52423.2952615351 -4.719524316666308 0.47972429382075676 DDEAAAVALSSLIHALDDLDMVAIVR ddPTM_BT-474_Trastuzumab_2h_R1 3 DDEAAAVALSSLIHALDDLDMVAIVR 26 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;; 229.66 7.751600000000002e-35 8292900000.0 1435934.0 1679248.0 1102392.0 1341769.0 1214043.0 1690219.0 1406660.0 1298330.0 1914430.0 1463229.0 False True 1428203.0908912653 1735140.75455315 1257599.211436964 1511636.8178253262 1368644.1798533718 1573378.1388775557 1338614.4818369679 1395217.9773861556 1442644.3785477125 1369844.472486627 1.0426023680620486 1.2666698953081983 0.9180598503668753 1.1035098131113446 0.9991237745179375 1.1485815875297594 0.9772017982501556 1.018522909285803 1.0531446507419449 1.0 20.385580673087066 4.2387001937535835 24.99999999701831 1.0305919504754661 1.1546360948597116 0.2929401678915281 0.07901654227977083 4.023783185811439 719995.9300967106 0.017708283773145803 0.04273393636578082 17326.07514922576 -4.2387001937535835 0.12404414438424549 DDEEMNTWIQAISSAISSDKHEVSASTQSTPASSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDEEMNTWIQAISSAISSDKHEVSASTQSTPASSR 35 1 Q01082;A0A087WUZ3 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 203.52 8.0684e-28 73365000.0 21289.0 18974.0 17521.0 20157.0 17496.0 31214.0 25997.0 21745.0 31238.0 27656.0 False True 21174.382389430248 19605.538119974783 19987.804504737916 22708.874133256228 19724.011893083363 29056.2496498525 24739.425791815822 23367.722318872653 23539.81346775463 25890.970402507184 0.817828843811115 0.7572345808280811 0.7719990480852109 0.8770962918816355 0.7618104530826455 1.1222541758048128 0.955523312074087 0.9025433174420457 0.9091900806265308 1.0 14.660161418508922 2.7709591804380453 24.997754500430077 0.9643431504195833 0.798013180241153 0.650100890470658 0.06591150405523882 455.7595274247383 351649.5769520227 0.020801940747283268 0.022062293508723983 590.1456094753489 -2.7709591804380453 -0.16632997017843032 DDEENYLDLFSHK ddPTM_BT-474_Trastuzumab_2h_R1 3 DDEENYLDLFSHK 13 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 0 ;; 258.6 6.1005e-24 939280000.0 1165300.0 961330.0 878480.0 845030.0 826830.0 1122750.0 1112380.0 1061390.0 1588020.0 1063280.0 False True 1159026.1542770024 993327.2879137441 1002162.3481149585 952010.711357121 932121.8994946345 1045136.935169216 1058569.929695736 1140596.311429213 1196673.749377799 995420.5600801938 1.1643582629874836 0.9978970977188968 1.0067728036823165 0.9563904439349981 0.9364101334410253 1.049945095653858 1.063439888774705 1.1458436335063478 1.2021790561382333 1.0 19.92494666014514 2.0854023113981546 2.3610472604772004 1.1291142169432133 1.0089404639639246 0.24496852974667305 0.0748979629890531 0.35020919570013254 3.7966056677759257 0.037168342198488816 0.022098693732120072 121.73131441102144 -2.0854023113981546 -0.12017375297928878 DDEFTHLYTLIVRPDNTYEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDEFTHLYTLIVRPDNTYEVK 21 1 P27797;K7EJB9 P27797 CALR Calreticulin 0 212.35 6.008600000000001e-23 75491000.0 124030.0 118200.0 100240.0 85977.0 88842.0 125860.0 126570.0 117270.0 183440.0 120010.0 False True 123362.23626102858 122134.21554659127 114352.92069830078 96861.67938457966 100155.5020922105 117159.59444257169 120447.32555564588 126021.28288499397 138233.66997006547 112350.85905426991 1.0980088385567193 1.0870786086966688 1.017819727066473 0.8621356365222952 0.8914529264420794 1.0428010558066045 1.0720641263407256 1.121676184283742 1.2303748376618389 1.0 16.77765163009479 2.159879316532326 2.3009532000591455 1.1263357193844967 0.9908151869627614 0.2757923008911305 0.08731402826029769 0.39531065334669113 4.17863250435637 0.04493122934980076 0.028527826179943417 144.5038162030581 -2.159879316532326 -0.13552053242173534 DDEKEAEEGEDDRDS(ph)ANGEDDS ddPTM_BT-474_Trastuzumab_2h_R1 10 DDEKEAEEGEDDRDSANGEDDS 22 2 P07910;G3V2Q1;P07910-3;P07910-2;G3V4C1;G3V2D6;P07910-4 P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.986)ANGEDDS(0.014);DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.803)ANGEDDS(0.197);DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS 294.44 1.3702e-55 18082000000.0 13616480.0 7748950.0 6294104.0 5791690.0 8369510.0 11165430.0 9162430.0 9584500.0 14960400.0 9653700.0 True False 13543170.384613141 8006869.116410804 7180259.133867308 6524917.360164652 9435317.488527674 10393590.104695078 8719208.257018385 10299744.059104845 11273609.879089445 9037592.601051606 1.498537385170169 0.885951543719633 0.7944880291496896 0.7219751595580242 1.0440078353863604 1.1500396802004207 0.9647711112806552 1.1396557151631703 1.2474129313792766 1.0 23.10750709361681 3.0096535425816473 24.964371850388456 1.099799113687358 0.9468299357022189 0.06752576889237638 0.20879414315570058 489.5385533163926 1265952.1928073855 0.06113836072350541 0.07298763798518475 1022.4769881891499 -3.0096535425816473 -0.1529691779851391 DDETDEPKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDETDEPKPK 10 1 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ; 93.058 0.008248899999999998 729370000.0 1534770.0 1265840.0 1010350.0 948840.0 1070970.0 1267060.0 1430970.0 1407600.0 2408700.0 1415990.0 False True 1526506.9688489758 1307972.7191835619 1152598.4978803687 1068963.046713244 1207351.6813634832 1179471.1245384142 1361748.5142637484 1512642.2596479726 1815108.1599263889 1325620.3059099694 1.1515416307696857 0.9866872990344747 0.8694786076690111 0.8063870491026135 0.9107824284078834 0.88975034501208 1.027253813322495 1.1410825957509925 1.3692519281985587 1.0 20.33823617643133 1.8130476088299512 2.5400529297497725 1.1982656652202432 0.929551195945772 0.4273583703396726 0.12023588337343001 0.23679944832977204 2.890591120434136 0.07121450903572894 0.0339308883596369 65.0200963665116 -1.8130476088299512 -0.2687144692744713 DDETMYVESK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDETMYVESK 10 0 O15144 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ; 172.59 8.5353e-06 252460000.0 460490.0 387880.0 344250.0 294920.0 334980.0 438740.0 421170.0 394440.0 621790.0 418110.0 False True 458010.77300524863 400790.3513215891 392717.40772536007 332256.8417611709 377637.71741798485 408410.93648286955 400796.3980743571 423875.11572573637 468558.1860591316 391425.86183801974 1.1701086148333835 1.0239240438523824 1.0032995926259844 0.8488372234808178 0.9647745696840524 1.0433928268436146 1.0239394918678497 1.0829001275882604 1.1970547471210036 1.0 18.578379553633148 1.786664046670739 2.3337408999649822 1.1080089218322389 1.0011669055021064 0.1552797927912979 0.08667590223279589 0.46414688273108645 4.957694937159921 0.055859721576035436 0.02536569466273353 61.187688443211194 -1.786664046670739 -0.10684201633013246 DDEVQVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDEVQVVR 8 0 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ; 147.04 0.0012649 706050000.0 591660.0 613320.0 543450.0 569370.0 527570.0 574210.0 584320.0 529590.0 782170.0 597520.0 False True 588474.5682996056 633733.9854402307 619963.0362479214 641452.183621178 594752.9123476224 534516.2142449484 556054.2092808334 569110.6950035302 589414.6840410283 559385.7620373906 1.0520013347430726 1.132910467960517 1.1082924849390101 1.1467080986918325 1.0632249740883963 0.9555413285782202 0.9940442660813835 1.0173850205459638 1.0536819562483437 1.0 19.093484008015913 2.9877364922260714 6.383678474272347 1.0054962926200735 1.1110344965342147 0.7067316149134228 0.03221049813626124 0.08333340979853356 15.024242598520628 0.00965655882007317 0.010844018059453552 972.1571893210463 -2.9877364922260714 0.10553820391414126 DDEYDYLFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DDEYDYLFK 9 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907;B4DQU5 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 ;; 161.37 0.00015025 352113000.0 943230.0 803670.0 702228.0 556282.0 631817.0 983220.0 793090.0 793840.0 1164020.0 737320.0 False True 938151.7544827056 830419.6701212256 801095.5985248047 626707.2441631209 712275.1498772443 915252.3156509249 754725.2068019847 853080.3718378409 877162.8680688817 690263.606348589 1.3591209877707664 1.2030471583371538 1.1605647337580256 0.9079245065205255 1.031888605057847 1.3259460693466067 1.0933869319786245 1.2358762130753684 1.2707650526571541 1.0 19.396787895668357 2.7596086696596 24.92744089869065 1.1948719062812558 1.1255097063518866 0.03159798774089018 0.13813732508244142 2752.2860511441363 3259557.3057192164 0.043510626790177316 0.04610452370552731 574.9216584006948 -2.7596086696596 -0.0693621999293692 DDFFYEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDFFYEDR 8 0 J3KPD3;Q9Y580;G3V1T9 J3KPD3 RBM7 RNA-binding protein 7 0 113.26 0.011018 0.0 187260.0 230460.0 199790.0 198640.0 179720.0 221080.0 201570.0 217510.0 255450.0 208710.0 False True 186251.81296654165 238130.7217839878 227918.695394189 223787.80363298178 202606.27671610325 205797.25996634184 191819.28902782308 233741.70069340052 192497.77035462944 195389.94911437918 0.953231288562913 1.2187460146406437 1.1664811646005795 1.1453393823342408 1.036932951947798 1.053264310160961 0.9817254669304106 1.1962831340754925 0.9851979143612106 1.0 17.5759967312222 3.2418912474410555 24.851106602828544 1.0580350739809594 1.1311872035651802 0.14751418804814354 0.08652044296922808 161.35281306327852 1203900.5255598046 0.024032048013588256 0.03126637179049917 1745.385032799147 -3.2418912474410555 0.07315212958422079 DDFLGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDFLGGR 7 0 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ; 180.49 0.0034329 251600000.0 379030.0 381180.0 380310.0 350400.0 343620.0 410640.0 423820.0 365220.0 443410.0 387650.0 False True 376989.34459419176 393867.3458718246 433854.3422862213 394760.6040726783 387377.97020469327 382253.4233425841 403318.20745037426 392474.57094958227 334137.54688959214 362909.84511613735 1.0387961353695123 1.0853035572671783 1.1954879376374605 1.0877649349698633 1.0674220482520271 1.0533013322365408 1.1113454563937375 1.0814657585935252 0.9207177798735727 1.0 18.469251669605033 1.2866573599029163 7.999910562656053 0.9607258482465451 1.0922104544029674 0.5820598508268147 0.04396144612124963 0.14574529115307253 21.279794809233717 0.030409065798965736 0.010934159020455182 19.348948108948864 -1.2866573599029163 0.13148460615642232 DDFLGQVDVPLSHLPTEDPTMERPYTFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDFLGQVDVPLSHLPTEDPTMERPYTFK 28 1 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-3;Q96PU5-5;Q96PU5-6 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 0 113.5 0.00028235 116050000.0 155620.0 147150.0 148370.0 129860.0 157850.0 187020.0 168000.0 173150.0 247500.0 191220.0 False True 154782.1592110073 152047.79879594647 169259.20634484137 146300.26268515413 177951.26184974928 174091.74759772568 159873.19817767665 186071.33223788455 186506.9413300874 179016.17588832142 0.8646266654001568 0.8493522892076576 0.9454967156176607 0.8172460503034262 0.9940512971339726 0.9724917132982004 0.8930656538960644 1.0394107198109541 1.0418440702612208 1.0 17.449730429632893 2.7331960533020996 0.567547998372765 1.0278596267295395 0.8563710643369773 0.537395116647519 0.05224369877841962 0.6870814040587159 0.46784618076975026 0.04294747948671655 0.04987136428706321 540.9984904590528 -2.7331960533020996 -0.17148856239256216 DDFNSGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDFNSGFR 8 0 Q15056 Q15056 EIF4H Eukaryotic translation initiation factor 4H 0 ; 227.3 6.2623e-06 645300000.0 481160.0 548270.0 498680.0 497840.0 527450.0 622630.0 625310.0 514960.0 566890.0 519040.0 False True 478569.4880219019 566518.8355137866 568889.8093957376 560866.4929553148 594617.6310589185 579589.0536133675 595061.366383827 553388.930113895 427187.55543682154 485914.42282749916 0.984884303777489 1.1658819102698301 1.1707613165409065 1.1542495275025493 1.2237085443952942 1.1927800995096682 1.224621740843192 1.1388608860254996 0.8791415429718047 1.0 18.890342729351158 1.3018518903469274 6.601672370669571 0.9407496209425251 1.1642959807341944 0.6110149320734006 0.06929769490500172 0.1149382220202265 9.075052457898941 0.047043802223838256 0.01673329926411507 20.03788548640102 -1.3018518903469274 0.22354635979166926 DDFTEFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDFTEFGK 8 0 O75822;O75822-3;H0YGJ7;H0YLP3 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 0 ; 89.75200000000002 0.031832 336500000.0 1314310.0 1218060.0 1036630.0 967730.0 1060430.0 1232920.0 1205090.0 1142480.0 1520550.0 1216040.0 False True 1307233.900993568 1258602.3907671822 1182578.493450515 1090244.5187764086 1195469.4748389588 1147691.1423814988 1146795.1928091438 1227737.658995889 1145830.8268261177 1138431.286095777 1.1482765072951353 1.1055585050578933 1.0387789828810308 0.9576726606973146 1.050102443107298 1.0081338736898897 1.0073468700443489 1.0784468715774544 1.006499769305987 1.0 20.11861578464538 4.318978599838501 2.880066945567931 1.0212589702100392 1.14128143469655 0.6796829405030229 0.030575291976927762 0.15723791229125217 2.520677881839401 0.008047842119989747 0.028452196027067236 20843.881708954024 -4.318978599838501 0.12002246448651088 DDGEEEFAGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDGEEEFAGAK 11 0 Q8N163-2;Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 148.32 0.0038291 0.0 140720.0 104540.0 101930.0 85606.0 77995.0 130120.0 124810.0 119840.0 179190.0 121640.0 False True 139962.3791554617 108019.55070423553 116280.8580085575 96443.71082261899 87927.2009374164 121125.11066953302 118772.46347949885 128783.06933518965 135031.0255229833 113876.83105875656 1.2290680892169004 0.9485647756434417 1.0211107643885922 0.8469124924354219 0.7721254632739909 1.0636501696033023 1.0429905923375784 1.1308979020389316 1.185763814004553 1.0 16.797114726164683 2.498554641320574 24.557766400180636 1.0958961522793702 0.9552854164786876 0.2011001396731572 0.1207989006039962 929.2212541847767 1064675.0945962076 0.04039660851208795 0.03773101206175226 315.17708993818655 -2.498554641320574 -0.14061073580068262 DDGLFSGDPNWFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDGLFSGDPNWFPK 14 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 132.76 0.00011283 21477000.0 38081.0 23094.0 25514.0 25050.0 19831.0 33772.0 29070.0 29528.0 41289.0 34197.0 False True 37875.97612719685 23862.66982938221 29106.149428336455 28221.327431565638 22356.360302454083 31437.42113073681 27663.77304181582 31731.52930014587 31113.87919425444 32014.518182475334 1.18308749522053 0.7453702627467489 0.9091546923317149 0.8815165441725723 0.698319436670201 0.9819738954542684 0.8641008708654844 0.9911606077993587 0.971867795008269 1.0 14.966438677159717 1.7045838251227114 6.351181259127845 0.9859519166496715 0.8849317798809355 0.10101628108844618 0.12416770006251039 0.2856796232953867 26.808877342454593 0.0592948400344263 0.03032935772228232 50.650510290766704 -1.7045838251227114 -0.101020136768736 DDGLFSGDPNWFPKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDGLFSGDPNWFPKK 15 1 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 ; 112.02 0.0012771 1596960000.0 4487900.0 4021900.0 3713200.0 3186500.0 3240700.0 4834800.0 4273300.0 4330000.0 6562200.0 5364900.0 False True 4463737.645052569 4155766.510210107 4235986.2842870215 3589910.573280796 3653383.935866217 4500581.655895007 4066584.1534087164 4653126.587294481 4945033.738974952 5022507.488878033 0.8887468371002297 0.8274286338871054 0.8434006905250606 0.714764603383944 0.7274023869464331 0.896082617270598 0.8096720935536408 0.9264548828644817 0.9845746870313999 1.0 22.259976379434388 1.5568328984963422 1.5053680526726276 1.0044416639551925 0.8077032302078997 0.6288261753924391 0.0558955674609174 0.2476006474692443 1.0909391021223827 0.050125953615516194 0.01723961365107834 36.04399315119367 -1.5568328984963422 -0.19673843374729283 DDGMQIWGAVER ddPTM_BT-474_Trastuzumab_2h_R1 4 DDGMQIWGAVER 12 0 O15296-4;O15296;I3L1D5;O15296-3 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 ;;; 218.62 7.881000000000001e-11 978550000.0 341669.0 361803.0 349994.0 340444.0 309999.0 395804.0 402560.0 312025.0 446757.0 394879.0 False True 339829.49206699466 373845.3941404679 399270.11299761717 383544.1754934901 349475.53514197265 368443.0011023972 383086.6348714607 335309.88993084553 336659.7235870947 369677.4841470792 0.9192593723987549 1.0112744491404582 1.0800498545882884 1.0375102405233152 0.9453525035431452 0.9966606485446898 1.0362725654101415 0.9070335746968019 0.9106849565475617 1.0 18.495907650776243 1.731793419812493 10.970631928462915 0.9324770455836695 1.0057569955156531 0.2599342504614156 0.04939164407081497 0.10970587596655897 58.99302442964047 0.02373192022728866 0.012925905348779342 53.9254055353312 -1.731793419812493 0.07327994993198361 DDGSTLMEIDGDKGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DDGSTLMEIDGDKGK 15 1 O96019-2;O96019;H7C5S0;C9JQT2 O96019-2 ACTL6A Actin-like protein 6A 0 ;;; 159.22 1.6218e-06 2525460000.0 1313650.0 957640.0 818127.0 737413.0 759232.0 1220460.0 1219320.0 1134610.0 1862140.0 1061480.0 False True 1306577.4543602369 989514.4684943962 933312.1703126386 830769.4101913421 855915.6948793705 1136092.4728538152 1160336.8333452644 1219280.3596328388 1403240.5483976128 993735.4376212498 1.314814189869138 0.995752421653637 0.9391958211199057 0.8360066258480154 0.8613114340857313 1.1432544617441962 1.1676516600060234 1.2269667694970063 1.4120866533215461 1.0 19.922502288362132 2.5305458651300796 4.439852242260852 1.2143280463539126 0.9785529733504674 0.2998319853190864 0.15393701070011623 0.2548853145813543 10.532215306275885 0.05301948884262113 0.04834186576194731 339.27031743299995 -2.5305458651300796 -0.23577507300344513 DDGSWEVIEGYR ddPTM_BT-474_Trastuzumab_2h_R1 6 DDGSWEVIEGYR 12 0 P00367;P49448 P00367 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial 0 ;;;;; 254.57 9.528799999999997e-21 3142740000.0 1512123.0 1704941.0 1660850.0 1445267.0 1794647.0 2760260.0 1573379.0 1327760.0 1925618.0 1716568.0 False True 1503981.8977806577 1761688.9305264005 1894683.243633008 1628237.6540134375 2023184.6577438521 2569449.7231531297 1497268.6468785403 1426844.1934286677 1451075.2458592344 1607015.1606121988 0.9358853199665583 1.0962491043676763 1.179007697047003 1.0132061563085404 1.2589704859866486 1.5988957578808949 0.9317078541487748 0.8878847122295386 0.9029630095751191 1.0 20.615952108814383 2.0477336909424673 24.999996496900952 0.9158143044385975 1.180195151117297 0.3440518109810363 0.1685731794138567 130.87681621213903 68544.69943819776 0.06597895862410577 0.0487286775565312 111.61785979916222 -2.0477336909424673 0.26438084667869954 DDGTVIHFNNPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDGTVIHFNNPK 12 0 Q96K17;Q96K17-2;E9PL10 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4;Transcription factor BTF3 0 ; 164.13 5.8116e-05 2056610000.0 3424900.0 3011900.0 2732300.0 2326500.0 2643200.0 3336700.0 3003900.0 3227000.0 4038100.0 3228900.0 False True 3406460.7189421603 3112149.270768002 3116984.090422661 2621034.6614585794 2979795.852526179 3106041.78274693 2858589.8809876367 3467815.126373969 3042964.3627677797 3022828.837599632 1.126911546089114 1.0295486241421787 1.031148059609553 0.8670800770644661 0.9857640020704499 1.027528169677439 0.9456671331935506 1.147208562800298 1.006661152929895 1.0 21.527467860516985 -0.4797501615766827 8.236705012586347 1.0000092192290246 1.0202817510489728 0.004906670443676209 0.07625738049217431 0.0 0.0 0.07596427715455424 0.017904951834639884 0.3313216674861097 0.4797501615766827 0.020272531819948147 DDGVFVQEVTQNS(ph)PAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDGVFVQEVTQNSPAAR 17 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2;E9PQE3 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR 261.76 3.4060999999999997e-23 0.0 231532.0 252882.0 232003.0 230860.0 250521.0 287208.0 262279.0 242735.0 303063.0 248060.0 True False 230285.4574376233 261299.02449960273 264667.0057937739 260086.85232939088 282423.3643956984 267353.98697491 249591.56276692147 260849.11828335482 228377.18448614245 232228.5984251495 0.9916326369762227 1.1251802158372972 1.1396830863580298 1.1199604789985436 1.216143775189374 1.1512535010242586 1.0747666930753503 1.1232428738419575 0.9834154192673714 1.0 17.825186122202616 1.2402115054020042 24.976776550396192 0.9917076580099052 1.121088296966986 0.4631091529108793 0.0541810792757476 35.23029298967584 533082.2531616298 0.04124812098941942 0.013265558779683294 17.38647359833443 -1.2402115054020042 0.12938063895708074 DDGYSTK ddPTM_BT-474_Trastuzumab_2h_R1 3 DDGYSTK 7 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;; 135.84 0.0070675 2475920000.0 3374200.0 3084000.0 2742130.0 2504260.0 2681290.0 2122940.0 3234200.0 3127110.0 4706600.0 3517500.0 False True 3356033.6821088586 3186649.075682633 3128198.06897877 2821299.059232439 3022736.388249058 1976186.1546632247 3077749.3901562025 3360470.827342828 3546721.495208843 3293010.1385167367 1.0191385817052205 0.9677009610173835 0.9499509377119008 0.8567538332886003 0.9179250172641686 0.6001154176686968 0.9346310095305405 1.0204860252439056 1.0770454222793207 1.0 21.650975523032503 1.776697833122151 4.01536295301509 1.0376427085860578 0.8840882824265197 0.2663602743336986 0.10788165454652306 0.2908884565668687 9.185448084331437 0.05905081628369555 0.030616494737574607 59.79953860562901 -1.776697833122151 -0.15355442615953807 DDIIENAPTTHTEEYSGEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDIIENAPTTHTEEYSGEEK 20 0 O14744-2;O14744;G3V580;O14744-3;O14744-5;G3V5L5;G3V2X6;H0YJX6 O14744-2 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed 0 204.31 9.7556e-22 631430000.0 393980.0 297770.0 215790.0 247710.0 247570.0 312140.0 291750.0 295430.0 465710.0 301110.0 False True 391858.8554552926 307681.0944442335 246171.35631969632 279070.0606017216 279096.5720376456 290562.49649852485 277636.9379067687 317476.4867631431 350942.01069428236 281892.902006759 1.3900983411277839 1.09148223404666 0.873279726333066 0.9899861210234738 0.9900801689251247 1.0307549229868795 0.9849021948772294 1.1262308646406816 1.2449480217343951 1.0 18.10478762609977 -1.071574844022028 7.569494005985804 0.999999994805822 1.0676055948495515 0.021611811982236606 0.14051842081133478 1.521733033758532e-08 1.8849601624927195e-09 0.13678889150462936 0.03224144756159312 0.08480572201467773 1.071574844022028 0.06760560004372951 DDILNGSHPVSFDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DDILNGSHPVSFDK 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 ;; 178.03 2.0295e-06 1060060000.0 1611150.0 1453480.0 1372420.0 1285430.0 1321020.0 1855730.0 1713340.0 1630450.0 2486070.0 1820290.0 False True 1602475.747415592 1501858.2031527853 1565644.8067115138 1448165.3062018945 1489244.0667010166 1727447.7530185403 1630459.1986055975 1752122.4582573425 1873411.3601312754 1704117.5337713251 0.9403551783597971 0.8813113963032078 0.9187422672934055 0.8498036535056409 0.8739092446312788 1.0136904989150506 0.9567762588518663 1.0281699610118906 1.099343984792699 1.0 20.700593411661043 2.351704329924821 1.2919677156372555 1.0402149974601806 0.8920248884038249 0.6817069960976404 0.04231241886492737 0.2552670868366149 0.8466761084436115 0.02449193238615873 0.01575307435206591 224.75239581691454 -2.351704329924821 -0.14819010905635577 DDILSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDILSR 6 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 97.473 0.095458 118580000.0 159620.0 195130.0 157550.0 172410.0 175990.0 178800.0 178620.0 169280.0 211640.0 205520.0 False True 158760.6236554492 201624.78409142394 179731.670550851 194237.08832240434 198401.2833255454 166439.97684992722 169979.46820533692 181912.53318642292 159484.15783070587 192403.53764547576 0.8251439947428759 1.0479265951073067 0.9341391158931077 1.0095297139510349 1.0311727411744431 0.8650567390117888 0.8834529254786488 0.9454739523636845 0.8289044982352278 1.0 17.553775800034703 2.729104669171808 24.9871253746232 0.9031960351901182 0.9741851069525626 0.16658515233557047 0.07230050902796517 1089.8080527770583 2879788.2198927654 0.02186322655094877 0.0208743738099145 535.9258052537774 -2.729104669171808 0.0709890717624444 DDIPVFLR ddPTM_BT-474_Trastuzumab_2h_R1 5 DDIPVFLR 8 0 A0A1W2PQD2;Q9UBB4-2;Q9UBB4;B1AHE4 A0A1W2PQD2 ATXN10 Ataxin-10 0 ;;;; 158.03 0.0008548 527876000.0 598260.0 614189.0 551646.0 527038.0 537050.0 633412.0 623208.0 544147.0 680653.0 612774.0 False True 595039.0346329345 634631.9095799086 629312.9618070116 593760.9567615772 605440.1341552603 589625.7193314651 593061.0481542464 584754.012262478 512915.188432921 573666.238697784 1.0372564994998947 1.1062737647251404 1.0970019139274172 1.035028587544925 1.055387424453638 1.0278201496917596 1.0338085251460647 1.01932791720472 0.8941003563278062 1.0 19.129852089696158 1.4930450893048144 3.1215179147403767 0.9474410395256777 1.057491407253335 0.5899680574444159 0.03537982177096145 0.1509635126055589 2.986729245189856 0.025718673061003346 0.009277688246667658 31.120394183697574 -1.4930450893048144 0.1100503677276573 DDIVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DDIVDR 6 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;; 143.37 0.02654 7096000000.0 4781480.0 5151840.0 4567680.0 4457410.0 4719550.0 4695710.0 4896060.0 4475620.0 6289300.0 4847610.0 False True 4755737.042952375 5323315.880046952 5210769.641013715 5021717.648971457 5320556.717535531 4371106.6202123705 4659218.873034493 4809613.491137866 4739386.287302294 4538231.3795522805 1.047927407223021 1.1729934934635535 1.148193911948091 1.1065362756948887 1.1723855115691415 0.9631740329298949 1.026659613264176 1.0597990910750696 1.0443245156376002 1.0 22.11369873532493 2.7460528479071415 24.970056327085913 1.0261866052423818 1.1317685274125473 0.6360057283366474 0.0417137461970855 376.4042440718043 1254477.4689595771 0.012687805852298357 0.013227855935882243 557.2535552099758 -2.7460528479071415 0.10558192217016549 DDKEEEEDGTGS(ph)PQLNNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDKEEEEDGTGSPQLNNR 18 1 P49407-2;P49407 P49407-2 ARRB1 Beta-arrestin-1 1 DDKEEEEDGT(0.007)GS(0.993)PQLNNR;DDKEEEEDGT(0.028)GS(0.972)PQLNNR 242.09 3.0578e-24 3256400000.0 5054700.0 3238600.0 3050400.0 2508200.0 2708400.0 4305600.0 4014100.0 3569000.0 5769300.0 3843000.0 True False 5027486.056829969 3346394.843224962 3479869.8054478946 2825737.8628284633 3053298.686055496 4007964.006292205 3819922.647648881 3835336.903014781 4347533.319659282 3597736.4498421736 1.3974025409922721 0.9301389609491163 0.9672386663010156 0.7854210285337669 0.8486721383356023 1.1140237930624481 1.0617572189915285 1.0660416504891654 1.2084079476833276 1.0 21.778658075971414 2.698544792168515 24.965074108412875 1.0893573429308054 0.9705231795158936 0.09190768498693447 0.16032771641883664 1190.1524129643503 742511.2969620402 0.052506458232459065 0.04950411821914918 499.5106959756137 -2.698544792168515 -0.11883416341491182 DDKHGSYEDAVHSGALND ddPTM_BT-474_Trastuzumab_2h_R1 2 DDKHGSYEDAVHSGALND 18 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 ; 215.57 5.671100000000001e-19 1417730000.0 1140220.0 1719900.0 1804490.0 2069450.0 1930070.0 1985070.0 2305140.0 1629270.0 2690960.0 2189400.0 False True 1134081.1822103518 1777145.8317984971 2058546.5070917502 2331442.1578145092 2175852.9740788434 1847846.7832521535 2193631.5717100534 1750854.4006654217 2027808.9650166123 2049670.6175603576 0.5532992337862579 0.8670397168076518 1.0043303979943652 1.1374716199959647 1.0615622605102646 0.9015335280805132 1.0702361408298113 0.854212567456031 0.9893340655047461 1.0 20.966960656326886 4.688108817902751 2.415591654960781 0.9960448615250416 0.47897210820897734 0.756530412533617 0.07714729060537076 0.24473542768086004 1.9006162121950054 0.020759479176631433 0.25103120069217666 48765.066175646745 -4.688108817902751 -0.5170727533160642 DDKLTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 DDKLTPK 7 1 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;; 122.52 0.0039519 1906910000.0 2672710.0 2239050.0 1840930.0 1763040.0 2017520.0 2857180.0 2956700.0 2760040.0 4773260.0 3018310.0 False True 2658320.4263259936 2313575.425715693 2100116.9423495913 1986240.6832314353 2274439.213222082 2659669.871678268 2813673.1253091414 2966008.199999139 3596954.031407085 2825678.871694798 0.9407723053581013 0.818767995504049 0.7432256238975853 0.702925128233032 0.804917797278892 0.9412498703658564 0.9957511992937627 1.0496621642714035 1.272952162907913 1.0 21.430166087176477 2.227505164304403 1.3602439193958042 1.1181056164768086 0.7942164538089861 0.6928564373173801 0.08863442692534923 0.24275095369704447 0.8734798720491326 0.05519315640764865 0.031767342135881296 168.85159379330844 -2.227505164304403 -0.3238891626678225 DDLALFCLQELR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDLALFCLQELR 12 0 Q15006;E5RGJ2;H0YAS9 Q15006 EMC2 ER membrane protein complex subunit 2 0 ; 131.37 0.00046516 32485000.0 39905.0 47552.0 40237.0 47203.0 47274.0 48668.0 45103.0 53432.0 52709.0 47942.0 False True 39690.1559138623 49134.73957420895 45902.01985372636 53178.89496016739 53294.06368504935 45303.695712149056 42921.195579808 57419.367162198374 39719.57321441445 44882.300514788774 0.8843164333963751 1.094746459309032 1.022719854536012 1.1848522546798794 1.1874182712066839 1.009388894787633 0.9563056057179024 1.2793320864486128 0.8849718654979996 1.0 15.453859005055357 4.740336784255286 23.266611832259148 1.0851874697207904 0.8843162642589296 0.17654705866896936 0.11479070975241978 91.45421406725542 1197707.1606288203 0.026424760263542076 0.168855597560123 54996.719401905146 -4.740336784255286 -0.20087120546186077 DDLDEEEDTHL ddPTM_BT-474_Trastuzumab_2h_R1 1 DDLDEEEDTHL 11 0 O00592-2;O00592 O00592-2 PODXL Podocalyxin 0 195.17 4.4244e-07 233760000.0 221680.0 205800.0 187630.0 155210.0 187680.0 260590.0 210130.0 176470.0 276500.0 234380.0 False True 220486.49951096345 212649.92859127306 214046.67309080373 174859.57008596027 211579.93553348698 242576.02666287753 199965.20912544744 189639.08749650276 208360.2799101785 219421.66773718628 1.0048529016516845 0.9691382386445804 0.9755038109872518 0.7969111341155216 0.9642618147762335 1.1055244870047407 0.9113284535096919 0.864267824833253 0.9495884433789984 1.0 17.74334647234513 DDLLGFALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDLLGFALR 9 0 Q9Y617;Q9Y617-2 Q9Y617 PSAT1 Phosphoserine aminotransferase 0 ; 129.56 0.00089739 216220000.0 151771.0 179845.0 148027.0 145455.0 147710.0 145989.0 143729.0 147430.0 207967.0 169947.0 False True 150953.8817993434 185831.0321064018 168867.91492625084 163869.58808616284 166519.99295423797 135897.1240511411 136776.2791719005 158431.97523437077 156716.31946502754 159100.83696105308 0.9487937630164447 1.1680078851621134 1.0613892305770125 1.0299731366358376 1.0466317848158213 0.8541571914194762 0.8596829644924024 0.9957959886355214 0.9850125395845073 1.0 17.279581899523652 2.8681147314070006 7.5493037277392085 0.937005561427481 1.0581489940105238 0.3968885594688919 0.06886672793465567 0.2680972877999471 15.234867813885383 0.02133694726608322 0.022667952688391217 738.0991945549954 -2.8681147314070006 0.12114343258304272 DDLYAEQMER ddPTM_BT-474_Trastuzumab_2h_R1 3 DDLYAEQMER 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ;; 167.69 1.2015e-05 1396580000.0 753910.0 784290.0 702970.0 688340.0 746960.0 830450.0 749720.0 711350.0 950470.0 811410.0 False True 749851.0323272746 810394.6185366831 801942.0656752252 775483.7734229107 842080.9284212132 773042.9461690275 713453.1793914736 764434.5491621081 716239.4041454867 759625.1191169482 0.9871330126615141 1.0668349402120267 1.0557076714465021 1.0208769482562634 1.1085480287962548 1.0176637484917261 0.9392174658742872 1.0063313204423134 0.942885360318394 1.0 19.534928087436427 2.470799024774267 19.669252365455428 0.9754760061681826 1.0493466546608827 0.5045680331761817 0.03530223142540456 9.296587046296247 28917.722236407597 0.011458351366569025 0.009640172920673745 295.6643925812592 -2.470799024774267 0.07387064849270009 DDNGKPYVLPSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDNGKPYVLPSVR 13 1 P00505;P00505-2 P00505 GOT2 Aspartate aminotransferase, mitochondrial 0 ; 141.0 3.6147e-05 649340000.0 499170.0 487400.0 738350.0 429060.0 428080.0 949530.0 679960.0 422820.0 1204560.0 638420.0 False True 496482.52418300044 503622.8143604786 842303.2621467512 483378.9520074866 482593.4505710523 883891.2260531958 647067.7371005528 454372.9754364557 907712.3282770506 597675.4890211398 0.8306891169255225 0.8426358845421306 1.4092986539003924 0.8087648914616766 0.8074506307117155 1.4788815039091097 1.0826405783518185 0.7602335778912702 1.518737751423741 1.0 19.189002852748693 DDNMFQIGK ddPTM_BT-474_Trastuzumab_2h_R1 7 DDNMFQIGK 9 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ;;;;;; 136.57 0.00044001 1829050000.0 1905280.0 1556394.0 1649106.0 1506086.0 1404328.0 2010938.0 2041781.0 1742830.0 2069129.0 1887864.0 False True 1895022.1841765074 1608197.6334299578 1881285.790513687 1696756.3331775216 1583160.8466958147 1871926.5892988748 1943012.2526691342 1872888.824511418 1559219.882858112 1767378.9032383114 1.072221797320495 0.9099337049250215 1.0644496135303345 0.9600410698965625 0.895767649933492 1.05915408737142 1.0993750401280764 1.0596985293191992 0.8822216220874899 1.0 20.75317993757942 DDNMFQIGKMR ddPTM_BT-474_Trastuzumab_2h_R1 4 DDNMFQIGKMR 11 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ;;; 184.55 4.4293e-06 3607800000.0 5183830.0 4987290.0 4592590.0 3862010.0 5255830.0 5701700.0 6410580.0 6467010.0 9593160.0 6902980.0 False True 5155920.835257663 5153288.932769528 5239186.752492108 4350940.070019194 5925128.796754932 5307554.899358103 6100475.754606242 6949611.125011392 7229054.259758143 6462425.906461494 0.7978305530903629 0.7974232907826427 0.810715175434921 0.6732673044141027 0.9168582947822516 0.821294507075325 0.9439915974133871 1.075387358493779 1.1186285714363287 1.0 22.623644403940396 2.081474853844499 1.5884531846226564 1.0804949986820616 0.7924132076222674 0.7857282965320492 0.06160404801121074 0.16052203191364256 0.7674016354325731 0.03688119749304769 0.01924353362534851 120.63542368617182 -2.081474853844499 -0.28808179105979415 DDPDGKQEAKPQQAAGMLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 DDPDGKQEAKPQQAAGMLSPK 21 2 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK 142.65 7.5337e-08 1211180000.0 2099672.0 1084230.0 890613.0 923961.0 869824.0 1616330.0 1652384.0 1548725.0 3536230.0 1586091.0 True False 2088367.5992474912 1120317.9401191256 1016003.5690530305 1040934.3678641432 980590.9305492311 1504596.9115315583 1572451.8732001313 1664298.7237662023 2664773.49955432 1484865.3144591763 1.4064357076103735 0.7544912856471244 0.6842395462803866 0.7010294857909565 0.660390488619088 1.0132884759851561 1.0589861975278587 1.1208415386633097 1.7946230365849003 1.0 20.501900645822225 1.837107220822282 1.5988462832787385 1.3712953594821535 0.8360578642647021 0.33496519403545477 0.27963276122776715 0.3940418659200798 1.9096510248444587 0.1966683376344197 0.08381390662249937 68.7238087893012 -1.837107220822282 -0.5352374952174515 DDPSKPVHLTAFLGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDPSKPVHLTAFLGYK 16 1 P39023;H7C422;H7C3M2;F8WCR1 P39023 RPL3 60S ribosomal protein L3 0 ; 126.63 4.242100000000001e-05 5395500000.0 5271390.0 5682650.0 6114770.0 5743670.0 6172110.0 7823640.0 7643460.0 7741570.0 9174300.0 7861270.0 False True 5243009.421946486 5871793.570015538 6975676.465466368 6470818.033088241 6958091.623537888 7282810.1816675775 7273716.638947279 8319285.2642959235 6913416.694321698 7359557.018228149 0.7124082888359452 0.7978460599560926 0.9478391767587389 0.8792401522348859 0.9454497881195958 0.9895718130356915 0.9883362029714207 1.130405708345043 0.9393794595515123 1.0 22.81118750043814 5.8671233162249345 0.3933960456886782 1.0412039735646355 7.759631666226085e-15 0.7471494575284856 0.05507301901223423 6.34691932221976 0.38982316428753555 0.04301778643922363 3.727793111630488 736416.1703110895 -5.8671233162249345 -1.0412039735646277 DDPYWSENKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDPYWSENKK 10 1 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 ; 86.31299999999997 0.021876 1161890000.0 1187150.0 1149900.0 967800.0 979140.0 973850.0 1308230.0 1305810.0 1194730.0 1893880.0 1229060.0 False True 1180758.5163047651 1188173.7263707698 1104057.8277316 1103099.023606513 1097864.025038823 1217795.1393421704 1242642.9816213804 1283886.8193160137 1427158.6506918233 1150620.3385487958 1.026192981947443 1.0326375143597215 0.9595326892309917 0.9586993960125731 0.9541496775760883 1.0583813778905542 1.0799765482927643 1.11582141937044 1.2403384529877228 1.0 20.13398044619221 2.3083514844652333 1.882081073288054 1.1261410862981787 0.9866041275571312 0.47358042657556765 0.06072712357342744 0.2773629881040883 1.9981375659488865 0.028253529051757407 0.01942704254083523 203.4002509766074 -2.3083514844652333 -0.13953695874104743 DDQHFTVTGLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDQHFTVTGLHK 12 0 P10586-2;P10586;H0Y6Z7;H0Y7Z9 P10586-2 PTPRF Receptor-type tyrosine-protein phosphatase F 0 ; 181.67 1.0327e-05 490200000.0 398770.0 466780.0 418970.0 380150.0 408160.0 547450.0 472820.0 364010.0 537490.0 445970.0 False True 396623.06662751216 482316.4901255314 477957.3342474774 428276.9510223425 460136.7566461426 509606.0700586831 449947.89025219675 391174.27460532653 405032.79149700503 417507.81278587383 0.9499775919904215 1.1552274600736534 1.144786563533378 1.025793860394157 1.1021033440687533 1.2205905002310542 1.0776993303427362 0.9369268373570463 0.9701202686349085 1.0 18.67144366929769 1.8272733776987613 5.3500260430399225 0.9653797769403749 1.1043382300184823 0.4058349630025345 0.07073286457767407 0.20253003227355132 8.726263917175565 0.03240741367882381 0.0187561757874319 67.18516339322332 -1.8272733776987613 0.1389584530781074 DDRDLQIESLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDRDLQIESLKR 12 2 O75146;O75146-2 O75146 HIP1R Huntingtin-interacting protein 1-related protein 0 64.12100000000001 0.037029 125030000.0 90183.0 121240.0 90705.0 98591.0 81257.0 116660.0 103710.0 149920.0 174330.0 115510.0 False True 89697.46474827327 125275.40010887221 103475.47557800658 111072.61049123717 91604.59730202769 108595.5687881011 98693.15108932638 161107.79167833476 131368.7074023196 108138.0529069136 0.8294717940361458 1.1584765652911342 0.9568831026306659 1.0271371409549022 0.8471078851482735 1.004230850000428 0.9126588507588768 1.4898344047032 1.2148240501001364 1.0 16.722514759579227 1.7572330290260922 24.999999999999996 1.280505299169527 0.969297139194424 0.4216562334390951 0.14318309849934596 5.9436207058898285 7965.614879182871 0.06144404971111198 0.034074155264264994 57.1785356765797 -1.7572330290260922 -0.311208159975103 DDREDLVYQAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DDREDLVYQAK 11 1 P62258;B4DJF2;I3L3T1;I3L0W5 P62258 YWHAE 14-3-3 protein epsilon 0 ;;; 210.79 1.0535e-08 4188560000.0 4765660.0 4489820.0 3808340.0 3521140.0 3753900.0 5268500.0 4981210.0 4826780.0 6575700.0 5380230.0 False True 4740002.216074603 4639260.944546495 4344521.169315319 3966915.9629693795 4231936.913891499 4904300.995714997 4740249.8422299 5186978.833492205 4955206.844865676 5036859.115153352 0.9410630926353176 0.9210622807751986 0.8625456996096754 0.7875773120266444 0.840193624070157 0.9736823849133373 0.941112255446831 1.0298042321428484 0.983789050195582 1.0 22.26409294758806 2.6536399409595024 4.960599475380322 0.9891368006477474 0.8684327923161009 0.6281741297373586 0.04432977876327498 0.16115131413739583 6.839844127684947 0.016272002927872224 0.015350334481151306 450.443102370295 -2.6536399409595024 -0.12070400833164652 DDRGPPQRPK ddPTM_BT-474_Trastuzumab_2h_R1 6 DDRGPPQRPK 10 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;;;;; 122.51 0.00027369 2011430000.0 1755610.0 1838040.0 1724700.0 1737240.0 1728180.0 1913790.0 1967070.0 1885910.0 2772940.0 2070840.0 False True 1746157.9908266077 1899218.0502813545 1967522.7686388628 1957174.4058767676 1948253.4792746226 1781494.2018770815 1871915.3091628687 2026646.1806569358 2089586.0924923331 1938677.2182646801 0.900695574475055 0.9796463446253081 1.0148789855796636 1.0095411383792112 1.0049395850530054 0.9189225442447331 0.9655631641653217 1.0453757652710218 1.0778411551989724 1.0 20.886641190008067 1.7033700371413008 5.726807025614853 1.0464487546734298 0.9734903231843236 0.3973322845721369 0.03943804262561414 0.1478886272856136 11.415204024285307 0.02097848948254106 0.010568938747075795 50.50914734254861 -1.7033700371413008 -0.07295843148910619 DDRNEEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DDRNEEKR 8 2 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;; 118.18 0.0010893 613122000.0 231992.0 190965.0 185945.0 152221.0 177712.0 148738.0 211829.0 210916.0 321258.0 232853.0 False True 230742.98084873427 197321.15458422 212124.43973708648 171492.16299242922 200342.56981845188 138456.0921515911 201582.02200463729 226655.62292974652 242088.27053665114 217992.122184517 1.0584922910811632 0.9051756210584514 0.9730830527790179 0.7866897265547587 0.9190358248307439 0.6351426407711948 0.9247215907830395 1.0397422652635877 1.1105367850483066 1.0 17.73391647416063 1.7649917900671392 3.925607309599757 1.058491024924852 0.8760517772795628 0.32564991220688 0.1089025158442621 0.2351709174346822 7.354096057561696 0.058149962407882914 0.029638537094539463 58.20922137554768 -1.7649917900671392 -0.18243924764528918 DDS(ph)HS(ph)AEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 DDS(1)HS(1)AEDS(1)EDEKEDHK 177.22 4.6861e-09 2778600000.0 1432800.0 727530.0 720160.0 490370.0 584980.0 1062300.0 838230.0 835220.0 1733100.0 770100.0 True False 1425085.9639990446 751745.396248827 821552.2682570658 552450.7917212306 659473.7355518921 988865.7013852205 797681.6125504383 897548.357561223 1306000.7273502003 720951.5586842202 1.9766736708356827 1.0427127692473643 1.1395387919771585 0.7662800434601825 0.9147268323484468 1.3716118503023416 1.1064288618867195 1.244949604102809 1.8114958094184994 1.0 19.459542801317824 1.446121278858335 12.15023257953191 1.4465946806330499 1.1649829533911886 0.04956471692760733 0.35703879699074115 0.90215745636176 341.11753634117656 0.194254521890889 0.08616313806253714 27.933237816601874 -1.446121278858335 -0.28161172724186123 DDS(ph)HS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 DDS(1)HS(1)AEDS(1)EDEKEDHKNVR;DDS(1)HS(1)AEDS(1)EDEKEDHKNVR 148.72 7.9204e-08 1164920000.0 1017990.0 673090.0 459440.0 460710.0 504850.0 896280.0 730830.0 630270.0 1643160.0 642280.0 True False 1012509.2549493226 695493.3937585026 524125.1584759318 519035.8387623393 569139.6550196132 834322.2732161788 695476.9608582816 677303.9478462121 1238225.235215945 601289.1405164268 1.6838974575188783 1.1566704716489091 0.8716690908899145 0.8632050768729286 0.9465324029148415 1.3875558645539612 1.1566431422010384 1.12641972423533 2.0592842141677057 1.0 19.197699377649702 1.3747243181604138 21.047911471259702 1.5508631250428795 1.1319503217120042 0.17098997969273588 0.3328008739626345 5.856367204445594 1190.4919626060278 0.21204517121601207 0.07744214336391918 23.698688806078245 -1.3747243181604138 -0.4189128033308753 DDS(ph)PVSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 DDSPVSHR 8 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 DDS(1)PVSHR;DDS(1)PVSHR;DDS(1)PVSHR;DDS(1)PVSHR 147.28 0.00034771 555971000.0 445145.0 423045.0 343442.0 336520.0 356866.0 339321.0 389531.0 361030.0 485224.0 372831.0 True False 442748.38878025865 437125.7970888976 391795.64834862173 379123.39749582694 402310.7697895004 315864.53794571664 370687.89737707464 387971.89187319373 365647.0468684859 349036.6063833218 1.2684869743834832 1.2523780861221008 1.1225058953224543 1.0861995291103161 1.1526320232086815 0.9049610618744824 1.0620315766248736 1.1115507221242924 1.0475893937237117 1.0 18.413018826281988 4.181307141918126 1.0496108361890566 1.049282206305001 1.3115542828166096 0.6450768118666154 0.061748768419471634 0.5557566614758873 0.8877304185754102 0.02048589591146622 0.13366447999781297 15181.236359041684 -4.181307141918126 0.26227207651160866 DDSFFGETSHNYHK ddPTM_BT-474_Trastuzumab_2h_R1 6 DDSFFGETSHNYHK 14 0 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;;; 242.79 9.7233e-18 5597200000.0 7934410.0 7453190.0 7125820.0 5964450.0 6674520.0 8937700.0 8254700.0 2718210.0 9374070.0 6376770.0 False True 7891692.01815583 7701264.923601506 8129073.517262239 6719548.7584511675 7524480.559020513 8319857.836082747 7855388.62498373 2921056.6329907 7063956.0546025615 5969799.079172529 1.3219359501877395 1.2900375408729794 1.3616996835995703 1.1255904376906702 1.260424422870774 1.3936579314887023 1.3158547751447207 0.4893056858783908 1.18328204365325 1.0 22.509250945980206 1.7707080671366888 24.999999999999908 0.8409777737614688 1.293808369661917 0.5193709796321744 0.17646981060481404 19.010269876036745 14791.058347154742 0.07650665232648904 0.04243977109401589 58.98044801650111 -1.7707080671366888 0.45283059590044816 DDSFFGETSHNYHKFDSEYER ddPTM_BT-474_Trastuzumab_2h_R1 2 DDSFFGETSHNYHKFDSEYER 21 1 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ; 169.84 5.7942e-12 978000000.0 702790.0 864300.0 820450.0 824330.0 857680.0 998520.0 1012000.0 280810.0 1355290.0 838890.0 False True 699006.2567273099 893067.7030196169 935962.2285207596 928690.0934795414 966900.4641323588 929494.6626632506 963045.6937845753 301765.4681242871 1021296.9394555726 785351.3219901368 0.8900554912876161 1.1371569360277118 1.191775199599797 1.1825154774377584 1.2311693341040841 1.1835399478386872 1.2262609953264587 0.3842426436102402 1.3004332085002832 1.0 19.582978653419193 DDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 6 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 DDS(0.02)HS(0.98)AEDS(1)EDEKEDHK;DDS(0.001)HS(0.999)AEDS(1)EDEKEDHK;DDSHS(1)AEDS(1)EDEKEDHK;DDS(0.006)HS(0.994)AEDS(1)EDEKEDHK;DDS(0.001)HS(0.999)AEDS(1)EDEKEDHK;DDS(0.003)HS(0.997)AEDS(1)EDEKEDHK 212.39 8.130899999999999e-13 5546550000.0 10355230.0 5115990.0 4404550.0 3546200.0 4064150.0 6964970.0 6223080.0 5933090.0 11156040.0 5474100.0 True False 10299478.592254223 5286272.634468744 5024672.354965091 3995148.5563999233 4581695.412395681 6483498.017675823 5922045.845925803 6375847.303420561 8406783.425277203 5124738.251387205 2.0097570035828225 1.0315205138599641 0.9804739497875764 0.7795809971989272 0.8940350097208324 1.265137398172642 1.155580159498444 1.2441313079150327 1.6404317670276307 1.0 22.289046889440964 1.5803043524073672 4.065408021840995 1.3527820010128317 1.127614932788056 0.024629976058585634 0.3484443391309751 0.5172290883640748 19.35765284969978 0.2087528010615814 0.09050721896060204 38.04559254096853 -1.5803043524073672 -0.22516706822477572 DDSHS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_BT-474_Trastuzumab_2h_R1 10 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 DDSHS(1)AEDS(1)EDEKEDHKNVR;DDSHS(1)AEDS(1)EDEKEDHKNVR;DDS(0.022)HS(0.978)AEDS(1)EDEKEDHKNVR;DDS(0.005)HS(0.995)AEDS(1)EDEKEDHKNVR;DDS(0.093)HS(0.907)AEDS(1)EDEKEDHKNVR;DDS(0.021)HS(0.979)AEDS(1)EDEKEDHKNVR;DDS(0.003)HS(0.997)AEDS(1)EDEKEDHKNVR;DDS(0.452)HS(0.553)AEDS(0.996)EDEKEDHKNVR;DDS(0.124)HS(0.876)AEDS(1)EDEKEDHKNVR;DDS(0.02)HS(0.98)AEDS(1)EDEKEDHKNVR 234.45 2.8614e-29 25722679000.0 9719458.0 6302812.0 4618036.3 4712338.4 5290378.3 8573237.0 8347266.0 7240475.0 16348020.0 7167782.0 True False 9667129.518061312 6512597.287289692 5268215.670348906 5308919.958273054 5964076.617976118 7980589.3054191135 7943476.853927269 7780796.010887081 12319269.52324483 6710328.016113094 1.440634421275418 0.9705333735774759 0.7850906330806283 0.7911565493557207 0.8887906230000905 1.1892994330911724 1.1837687866901723 1.159525434852594 1.8358669641280325 1.0 22.677951859692 2.0988731849395896 1.3634269173621991 1.3605254787181174 0.9646988377970689 0.24263955424912753 0.2662503221232905 0.5920750157311857 2.077563962905875 0.17601097421635173 0.08999045453741848 125.56632533887738 -2.0988731849395896 -0.39582664092104847 DDSHS(ph)AEDSEDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 DDS(0.004)HS(0.995)AEDSEDEKEDHK;DDSHS(0.98)AEDS(0.02)EDEKEDHK 240.46 1.5329e-20 688900000.0 1282110.0 624410.0 530460.0 448960.0 577640.0 842510.0 818030.0 662640.0 1138710.0 707760.0 True False 1275207.2622158125 645193.1093861846 605144.1571590257 505798.28996709443 651199.0300594805 784269.2667552129 778458.7637219338 712089.56161774 858090.1784322571 662590.150856179 1.9245792599965879 0.9737438876090831 0.9133008638553964 0.7633652406597309 0.9828081948064287 1.1836416006815131 1.1748722233737294 1.0747059259749023 1.2950542312219084 1.0 19.33775723291678 4.741196743346561 24.923321275190915 1.0404901532328086 1.924579588743834 0.772835606571449 0.14384768153384117 117.1210996406904 1107259.461426028 0.03751468443123732 0.2575479133768365 55105.72788984181 -4.741196743346561 0.8840894355110254 DDSHSAEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 5 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK;DDSHS(0.422)AEDS(0.578)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK 349.31 6.362599999999997e-88 5621100000.0 3444500.0 1622100.0 1429000.0 1244650.0 1360000.0 2298550.0 2278340.0 2129970.0 3962780.0 2145710.0 True False 3425955.1947199255 1676090.6179198432 1630190.7789093365 1402222.5623831619 1533187.938648457 2139656.6487046964 2168127.990095996 2288919.1771685057 2986205.9675314873 2008768.9507652475 1.7054998751423334 0.8343869598747684 0.8115372244718885 0.6980506951030782 0.7632475293210719 1.0651581646010542 1.0793316918155471 1.1394636383126762 1.4865850880430433 1.0 20.937880203701745 1.975459490149347 1.7229303282280852 1.234314973313287 0.9392412367325697 0.1079970902629469 0.28966360951652526 0.7163729297227202 3.9589285549532836 0.18443669158831807 0.08965911645045717 94.50602355882253 -1.975459490149347 -0.29507373658071734 DDSHSAEDS(ph)EDEKEDHKNVR ddPTM_BT-474_Trastuzumab_2h_R1 8 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHS(0.001)AEDS(0.999)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR 368.59 2.195199999999999e-112 13642104100.0 5145557.0 3351798.0 2941264.0 2763868.0 2934799.0 4923825.0 5028648.0 4711843.0 9892016.0 4834522.0 True False 5117853.892837124 3463360.5702253194 3355368.4052750105 3113773.4054142297 3308528.2567334925 4583452.567187313 4785393.084939151 5063464.650913947 7454261.203023385 4525978.666917476 1.1307728713451402 0.7652180500850929 0.7413575388238105 0.687977923575795 0.7310083631010226 1.0126986679565992 1.0573167566868704 1.1187557484362909 1.6469943302009165 1.0 22.10979835383952 2.054260011766274 1.383640142899588 1.2899461800543564 0.8054664461297751 0.48617391533299203 0.19549800478615517 0.34564296942417955 1.2397875517465862 0.12942407970116895 0.0638482216523392 113.30785334361126 -2.054260011766274 -0.4844797339245812 DDTDDEIAKYDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDTDDEIAKYDGK 13 1 P27824;P27824-2;H0Y9Q7;D6RDP7;D6RAU8;D6RB85;D6RAQ8 P27824 CANX Calnexin 0 105.14 0.00094621 0.0 91891.0 94119.0 85612.0 69141.0 74258.0 121040.0 103030.0 82576.0 154090.0 92116.0 False True 91396.26906604988 97251.69401886292 97665.42544715625 77894.2435108136 83714.31613835084 112672.78969751231 98046.04528717873 88738.24043243183 116116.58420021474 86237.07801552468 1.059825670920766 1.127724828540171 1.1325224334430046 0.9032569899549568 0.970746204124406 1.306546931903567 1.1369360783482039 1.0290033298259118 1.3464809670303424 1.0 16.39602067540507 2.773165570729031 24.97445886615959 1.1519342512336557 1.0414296006794936 0.214441555354965 0.11846751156909564 1127.696665197456 813858.4697852146 0.036771220830978286 0.03900022172432806 593.1514149360285 -2.773165570729031 -0.11050465055416203 DDTHKVDVINFAQNK ddPTM_BT-474_Trastuzumab_2h_R1 3 DDTHKVDVINFAQNK 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 ;; 211.51 8.070800000000001e-10 1889260000.0 4620910.0 3742240.0 3403660.0 3200550.0 3141420.0 4568280.0 4715700.0 4050740.0 6547960.0 4376620.0 False True 4596031.533991361 3866798.196168152 3882865.7428569337 3605739.301840212 3541461.216344875 4252485.556174413 4487583.575276606 4353026.788040939 4934302.996168728 4097300.3645871067 1.1217218961330682 0.9437429165771735 0.9476644125035285 0.8800280626249791 0.8643401511282064 1.0378749854242002 1.0952537466041568 1.0624133943569456 1.2042814919833118 1.0 21.966242226998737 2.5128702846092614 5.610740795657477 1.0897339957912058 0.9466552740268318 0.40396608750160756 0.07992533868101392 0.1902197162797963 16.54714307638974 0.026785054928381742 0.024444700803113607 325.73939439243446 -2.5128702846092614 -0.14307872176437397 DDTPVHFCDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDTPVHFCDK 10 0 C9J2P9;Q75N03-2;Q75N03;C9K074 C9J2P9 CBLL1 E3 ubiquitin-protein ligase Hakai 0 113.47 0.0025544 0.0 206210.0 187400.0 166070.0 158140.0 164260.0 212130.0 187500.0 163260.0 248990.0 203040.0 False True 205099.78827208458 193637.4957143078 189451.21249368342 178160.50778554045 185177.5373547023 197465.952400308 178429.90868044275 175443.29021748202 187629.75079506423 190081.81336871034 1.0790079526137684 1.0187060628399012 0.9966824765407529 0.9372832920104482 0.9741991307474799 1.0388471621810251 0.9387005811772963 0.922988302290481 0.9870999622205322 1.0 17.53626097897499 4.598472763183674 1.389464652644488 0.9663245561710069 1.107200715142484 0.49842986513355736 0.0327868714682453 0.8044757564029145 1.7039796889551104 0.009758903321839603 0.14766624790769461 39670.964847125455 -4.598472763183674 0.1408761589714772 DDVVLPALHFHQGDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDVVLPALHFHQGDSK 16 0 Q8TC07-2;Q8TC07-3;Q8TC07;C9JA93;F8VV61 Q8TC07-2 TBC1D15 TBC1 domain family member 15 0 82.865 0.00509 101680000.0 165500.0 160380.0 169120.0 159440.0 145570.0 206660.0 188470.0 50676.0 218430.0 134430.0 False True 164608.96638877876 165718.15134824286 192930.62598260795 179625.08765224856 164107.47663901147 192374.08062531272 179352.9860746826 54457.70044751393 164600.85331204426 125850.56230868654 1.307971640087118 1.3167851482599577 1.5330136190364194 1.427288717325424 1.3039868366776803 1.5285913475178374 1.4251266167151895 0.43271718018978705 1.3079071741317367 1.0 16.941352137007545 1.7719131569968922 24.999999999998938 0.8583672638331213 1.4091524468492642 0.5191802242926442 0.2152543681332879 21.064822618046893 15797.076279356696 0.09275271196659302 0.05145740983099576 59.14433553233147 -1.7719131569968922 0.5507851830161429 DDWEEKR ddPTM_BT-474_Trastuzumab_2h_R1 6 DDWEEKR 7 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;;; 151.29 0.0030323 13415350000.0 7875420.0 7063580.0 5887150.0 5928990.0 5999830.0 8445860.0 8454920.0 8048350.0 12405080.0 8463820.0 False True 7833019.61376141 7298686.99027572 6716009.5479748845 6679599.526086961 6763872.786721438 7862017.577615921 8045923.218669048 8648958.74569321 9348014.253555717 7923651.761359143 0.9885618209472917 0.9211266736719608 0.8475901958143208 0.8429950895445726 0.8536307488557816 0.9922214926148333 1.0154312002839625 1.0915369587380321 1.1797608646991136 1.0 22.91773404556367 2.274653568386952 1.7228447539231388 1.0955664138330365 0.8887200815964448 0.6720253032993334 0.059930397234814976 0.2081845969938234 1.2415481781065028 0.03137978429487375 0.02027775256502995 188.21471238400184 -2.274653568386952 -0.20684633223659177 DDWLEWLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDWLEWLR 8 0 P42345 P42345 MTOR Serine/threonine-protein kinase mTOR 0 81.296 0.054036 7971100.0 16273.0 18866.0 14993.0 16417.0 14377.0 20644.0 14695.0 14990.0 18806.0 15925.0 False True 16185.387976100275 19493.94340526218 17103.88407850783 18495.390516727068 16207.825730844752 19216.928870748856 13984.146709648541 16108.629917677665 14171.51328748938 14908.652865921564 1.085637188125635 1.307559011573859 1.1472454441275617 1.2405809353173771 1.0871422036992262 1.2889782224841533 0.9379886187848485 1.080488630498536 0.9505562584989051 1.0 13.863862282277548 2.2333271459795685 24.999957482698473 1.0055225920335953 1.1933616665338949 0.6047457106642392 0.07915786105705262 86.67869602055737 414054.550061846 0.02668715576576976 0.02029966948749909 171.13039231976197 -2.2333271459795685 0.18783907450029957 DDYANLHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DDYANLHSK 9 0 O95749-2;O95749;C9J6G3;C9J7M1 O95749-2 GGPS1 Geranylgeranyl pyrophosphate synthase 0 ; 107.83 0.0027098 1119800000.0 714790.0 678410.0 588790.0 528060.0 611200.0 687740.0 668380.0 660910.0 814390.0 660240.0 False True 710941.6500606345 700990.4667424958 671686.5141455762 594912.341856789 689032.6971337766 640198.1525658214 636047.9059404485 710230.4602329785 613694.4967669086 618102.9179400976 1.1501994723304867 1.1340999150734168 1.086690411338054 0.9624810441591279 1.1147539950629275 1.0357468537753531 1.0290323625394857 1.1490488713431526 0.9928678201554514 1.0 19.237487550171252 4.1478387551995075 3.7667749716403525 1.0529532956535337 1.1436020124399937 0.34663664433165087 0.053695738228624744 0.2623667026707409 7.054885011252494 0.013549416064396694 0.03355864403616082 14055.255838813564 -4.1478387551995075 0.09064871678646003 DDYFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DDYFAK 6 0 P05455 P05455 SSB Lupus La protein 0 101.52 0.084748 595660000.0 863230.0 827610.0 694740.0 639610.0 678040.0 856540.0 766200.0 759720.0 1153200.0 781940.0 False True 858582.4655938692 855156.4985491894 792553.3532116673 720584.5604193097 764384.3749420579 797329.4058782808 729135.9788317605 816414.1641799917 869009.31208831 732035.9197474846 1.17286931205512 1.1681892588606515 1.0826700327561223 0.9843568341125595 1.0441897102613924 1.089194374714999 0.9960385264745963 1.1152651695856854 1.187112938922552 1.0 19.481554915255085 4.200673923190597 4.438101511038406 1.062209812344967 1.1724269093343527 0.36038875344243404 0.05818525598306925 0.20839915999962386 9.006833409345363 0.01492424815043921 0.036965449855156686 15873.544842063637 -4.200673923190597 0.11021709698938564 DDYPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 DDYPSR 6 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;;; 153.88 0.023438 4087800000.0 1686430.0 1786270.0 1582820.0 1602480.0 1554520.0 1681100.0 1780740.0 1701300.0 2297050.0 1730330.0 False True 1677350.4482599862 1845724.9171269825 1805667.2978819273 1805353.8036940256 1752478.907638085 1564889.51388374 1694598.8031125932 1828259.6450263544 1730972.8063930406 1619898.8579899573 1.0354661588818683 1.1394075056125665 1.1146790362717336 1.1144855092583923 1.0818446466544454 0.9660414946063512 1.046113956284485 1.1286258003138174 1.0685684466380259 1.0 20.62747230735287 2.9955189383329865 24.84454240541852 1.0533335356044893 1.103908218325794 0.2429685505055973 0.04752885534921424 317.0681453556912 1757952.7532471176 0.014965875102573906 0.017451913161618874 989.7350224251649 -2.9955189383329865 0.05057468272130472 DDYSRDDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DDYSRDDYR 9 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 73.499 0.039897 374650000.0 246790.0 316680.0 320740.0 355050.0 359710.0 371820.0 353430.0 325210.0 479070.0 391040.0 False True 245461.31006094645 327220.50236289785 365897.40407794283 399999.2935959033 405516.9363317914 346116.9585701337 336333.24066628725 349478.8215829191 361009.6177091111 366083.4924138127 0.6705063602908442 0.8938411841663021 0.9994916778829799 1.0926449891484125 1.1077170774840728 0.9454590707927653 0.9187336977382842 0.9546423939484163 0.9861401160941552 1.0 18.481813194952615 4.672635050246463 2.3366476944680303 0.997213577040009 0.6179828515631579 0.7568444317579185 0.05692986037807808 0.26923702971369956 1.9586259831382589 0.01664603455568353 0.19564241771576996 47058.17172710887 -4.672635050246463 -0.3792307254768511 DDYVFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DDYVFR 6 0 E7ESC6;Q9UIA9;H0YBE1 E7ESC6 XPO7 Exportin-7 0 ; 137.5 0.029562 1223490000.0 823790.0 894810.0 788200.0 814070.0 745320.0 893000.0 898520.0 819820.0 1051840.0 894140.0 False True 819354.8061716736 924593.2099259322 899171.7088427837 917131.1785315232 840232.0841422556 831269.0118958887 855055.1549202743 880999.1313616078 792628.1259338954 837075.2196882325 0.9788305601458864 1.104552121696179 1.0741826871636206 1.095637712072169 1.00377130319925 0.9930636964805788 1.0214794737786388 1.0524730760632655 0.946901911908357 1.0 19.674997743801768 3.2239299741700993 24.979145214998272 1.0095242613536437 1.067024575427171 0.3399696132708123 0.040447866661867074 276.0188974177113 471251.4286476606 0.011542321066563437 0.013849668772807987 1674.6728292852529 -3.2239299741700993 0.05750031407352729 DDYVHEFCR ddPTM_BT-474_Trastuzumab_2h_R1 3 DDYVHEFCR 9 0 Q13564-2;Q13564;Q13564-4;Q13564-3 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 ;; 134.68 0.00024221 1936060000.0 1028440.0 1200870.0 1061380.0 1070160.0 1022300.0 1169520.0 1124680.0 976220.0 1399010.0 1141940.0 False True 1022902.9933104251 1240840.2320087564 1210813.0783196574 1205642.1462740235 1152483.845353174 1088673.8351539527 1070274.9317051747 1049070.493544717 1054242.7312735575 1069060.4115359783 0.9568243125201538 1.1606829872466913 1.1325955626586295 1.1277586685132326 1.078034349525053 1.0183464127998105 1.0011360631785546 0.9813014140496134 0.9861395295321699 1.0 20.02791194994178 2.6909790947739216 2.25190148870735 0.9902938586065247 1.1022287723709558 0.4580336845613162 0.051505039190146984 0.25709314164476604 2.5714461788259193 0.018239978291829564 0.017545968197949808 490.8842463494002 -2.6909790947739216 0.1119349137644311 DEAAYGELR ddPTM_BT-474_Trastuzumab_2h_R1 6 DEAAYGELR 9 0 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 ;;;;; 135.79 0.00049067 5842460000.0 3833070.0 3824820.0 3609770.0 3387030.0 3284440.0 3901080.0 4126820.0 3589000.0 4862780.0 3945210.0 False True 3812433.177014112 3952126.8215474878 4117994.2393166902 3815827.6507199905 3702693.965598921 3631407.5217545484 3927189.950616661 3856829.4045727276 3664413.0269136243 3693423.320135782 1.0322221003559253 1.070044367782406 1.1149532242530216 1.0331411592916753 1.002510041405922 0.9832091279536964 1.0632926719248323 1.044242446714973 0.9921454188411062 1.0 21.81652719522011 3.497770162155999 23.100492931110754 1.0200251859795875 1.0724831742623553 0.4293162773007382 0.029545981049462138 306.31206890277844 342677.89608481794 0.008317615830155646 0.01269449842795023 3146.082899707162 -3.497770162155999 0.05245798828276782 DEADVLEVDQGFDDHNLPCDVIWLDIEHADGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEADVLEVDQGFDDHNLPCDVIWLDIEHADGK 32 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 408.84 2.2143999999999986e-186 529970000.0 356105.0 355972.0 260458.0 214364.0 237300.0 345303.0 339150.0 318349.0 450273.0 307287.0 False True 354187.77024698484 367820.312830382 297128.22245848004 241502.46042076402 267518.7484127046 321433.01636583015 322744.01882118476 342105.8189234667 339309.25249908067 287675.6805783637 1.2312051179818206 1.2785936999988663 1.0328583280349324 0.8394955734013743 0.9299317477058396 1.1173451148863132 1.1219023386763773 1.189206603198688 1.1794853559289724 1.0 18.134083738642364 4.2390145916757564 24.999532522104158 1.0591105780657613 1.2548994640135887 0.37665851520692917 0.10439020596911475 14.112523358965978 776930.9866579416 0.030192828261212442 0.07313956003899573 17338.622520765537 -4.2390145916757564 0.1957888859478274 DEADVLEVDQGFDDHNLPCDVIWLDIEHADGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DEADVLEVDQGFDDHNLPCDVIWLDIEHADGKR 33 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 303.94 1.5734999999999996e-90 864424000.0 397734.0 420640.0 350814.0 337183.0 327249.0 433080.0 415602.0 386174.0 604417.0 419318.0 False True 395592.6443364015 434640.7481177508 400205.56187004875 379870.3332278479 368922.22039321193 403142.19896066195 395497.74350618257 414992.26483183843 455466.5291228586 392556.76624379866 1.0077336027643895 1.107204831231506 1.0194845593910864 0.9676825516540152 0.9397933040952645 1.0269653554010814 1.0074918521734444 1.0571522401784463 1.1602564731746075 1.0 18.58254176654747 1.579301966218576 4.351236510543179 1.0880901956446087 1.0114540737435682 0.21283001453723227 0.05447856389383077 0.23006412497359452 9.720566040528816 0.03267209416584467 0.014405756753794562 37.95788154982984 -1.579301966218576 -0.07663612190104052 DEAEDYYDVITHPMDFQTVQNK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEAEDYYDVITHPMDFQTVQNK 22 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 0 253.11 5.1131e-37 107570000.0 133860.0 162300.0 171170.0 147340.0 142640.0 206760.0 192830.0 210050.0 299470.0 197240.0 False True 133139.3126332441 167702.0573875781 195269.24816368884 165993.22889288925 160804.35850648207 192467.16786068765 183502.07621786537 225724.99761228776 225669.63119240935 184651.9743343402 0.7210283730417922 0.9082061428919698 1.0574988372998626 0.8989518226993529 0.8708510108606885 1.0423239099095516 0.9937726194338288 1.2224347907787798 1.222134948764753 1.0 17.494449162635004 2.207115374049462 1.5649436113528865 1.1638509395660865 0.9040611044538236 0.5032900340020576 0.10374935524308868 0.30735911643488484 1.4749476373673416 0.05903636822936898 0.03457819327102595 161.1073573828973 -2.207115374049462 -0.25978983511226295 DEAGHFLWPGFGENAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEAGHFLWPGFGENAR 16 0 Q16822;Q16822-3;H0YML5 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 83.806 0.007702899999999999 265390000.0 280530.0 296460.0 338080.0 273620.0 352410.0 486890.0 276450.0 266120.0 345490.0 323970.0 False True 279019.6576498132 306327.49188614544 385678.7253559616 308260.2639451094 397287.32460228144 453232.44031577767 263077.0573584444 285979.2257299789 260348.61882881555 303293.95723532833 0.9199644470111203 1.01000196205183 1.2716333977492016 1.0163745653063825 1.3099084736924806 1.4943668658855302 0.8673996005608535 0.9429110567741552 0.8584035804802035 1.0 18.210357228734303 DEALQNIS(ph)ADDLPDSASQAAHPQDSAFSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEALQNISADDLPDSASQAAHPQDSAFSYR 30 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 DEALQNIS(1)ADDLPDSASQAAHPQDSAFSYR 274.99 1.6290999999999994e-71 182370000.0 17191.0 17202.0 18270.0 20778.0 14890.0 22004.0 20641.0 17893.0 22828.0 21962.0 True False 17098.445566099657 17774.55817117142 20842.257194313206 23408.49266958366 16786.153240055522 20482.91527184451 19642.51597372275 19228.266518812987 17202.345279528225 20560.366357385832 0.8316216388798655 0.8645059072493776 1.0137103995146521 1.1385250759977195 0.8164325940634559 0.9962329909790981 0.9553582670800336 0.9352103063039867 0.8366750368409016 1.0 14.327578351147134 4.375039442685402 6.076998558134456 0.9597029407788311 0.839858272939894 0.22018185799515655 0.08618125047102777 0.28712655824069677 14.252244285105716 0.020919143797965604 0.05905883022526903 23715.890839324496 -4.375039442685402 -0.1198446678389371 DEAQNEGPATESEAPLKEDGLLPKPLS(ph)SGGEEEEKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DEAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPR 37 3 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 DEAQNEGPATESEAPLKEDGLLPKPLS(0.533)S(0.467)GGEEEEKPR;DEAQNEGPATESEAPLKEDGLLPKPLS(0.5)S(0.5)GGEEEEKPR;DEAQNEGPATESEAPLKEDGLLPKPLS(0.5)S(0.5)GGEEEEKPR 202.21 1.9630000000000002e-30 444240000.0 380494.0 205973.0 172395.0 156573.0 196468.0 325289.0 306661.0 272278.0 537855.0 292248.0 True False 378445.4625808577 212828.6867916924 196666.7175157979 176395.1257462085 221487.03524293005 302802.53707794135 291826.63587121683 292596.76695966924 405307.8421377539 273596.48243389925 1.383224883646996 0.7778926282179511 0.7188203436179501 0.6447273158521892 0.8095390455045094 1.1067486481705708 1.0666315344230421 1.0694463772221943 1.4814073577706761 1.0 18.06169015638653 2.693417650580555 5.334669752222038 1.1385437559475793 0.8411469255795252 0.27559242788359983 0.2235418735574209 0.27097384530752977 19.026362366192835 0.07343720600361489 0.07014826558861667 493.6483054882546 -2.693417650580555 -0.2973968303680541 DEAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPR 37 3 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 175.75 3.7962e-19 368200000.0 341000.0 215080.0 192580.0 184440.0 174750.0 327190.0 312880.0 319030.0 549210.0 329980.0 False True 339164.09388866136 222238.80778139457 219693.59006463282 207790.0850889407 197003.37667560118 304572.125422414 297744.79908232996 342837.638601515 413864.55453695916 308920.39388990856 1.0979012735867832 0.7194047792797872 0.7111657061492874 0.672633109366654 0.6377156722964953 0.9859243075125556 0.963823706596848 1.1097928313651368 1.339712633813519 1.0 18.236875590441656 2.17504414396272 1.5264113525667764 1.1604527098819541 0.762778220537654 0.5312920508985433 0.15016121240688948 0.2981506101306696 1.3463965316274058 0.08863788011557638 0.04994748553857942 149.63877490422175 -2.17504414396272 -0.39767448934430016 DEASS(ph)VTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEASSVTR 8 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 DEAS(0.004)S(0.996)VTR;DEAS(0.004)S(0.996)VTR 151.83 0.00048977 624620000.0 1220540.0 1137660.0 1035340.0 932520.0 1045510.0 900460.0 1017210.0 1067860.0 1250770.0 1025710.0 True False 1213968.7482547434 1175526.325370008 1181106.8726633966 1050576.9363865713 1178649.5012767257 838213.3196548406 968003.6661804426 1147549.1356832064 942534.4929593261 960248.3096454879 1.264223780516652 1.2241899449987035 1.2300015119000283 1.094067988283605 1.2274424119651601 0.8729130905362373 1.0080764073803137 1.1950545751097106 0.9815528790748911 1.0 19.873047993575117 3.4264048544875716 1.2534255609412355 1.0451675931077304 1.2466036638442748 0.4810734074128312 0.09328725605896068 0.46082780451450367 1.4873777582517724 0.03414973445724255 0.06408356432101278 2669.345901060909 -3.4264048544875716 0.20143607073654435 DEATAAVIDLNDRPIGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DEATAAVIDLNDRPIGSR 18 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 ;;; 262.59 6.9211e-31 4018810000.0 1517580.0 1687590.0 1499390.0 1556390.0 1497300.0 1634050.0 1806440.0 1572890.0 1929890.0 1751590.0 False True 1509409.5178989887 1743760.4129803006 1710491.0790684887 1753428.814419737 1687972.2798075972 1521091.969639952 1719055.5959290597 1690267.0387735867 1454294.468701099 1639802.0265883524 0.9204827737890723 1.0633969129848169 1.0431082846184832 1.0692929914642122 1.029375651717826 0.9276070799867351 1.0483311814814598 1.0307750639205076 0.8868719791295744 1.0 20.645090218009184 2.9429797417276107 24.994451933856592 0.9893586396322653 1.030876336851647 0.11894680609426134 0.0587306365409854 664.5579206704793 291303.79113766045 0.017880590224234813 0.01896529012562018 876.9599131701398 -2.9429797417276107 0.04151769721938159 DECPEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DECPEVR 7 0 P30153;B3KQV6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ; 143.02 0.0056997 587990000.0 852960.0 874390.0 780030.0 798720.0 762350.0 882950.0 834550.0 828940.0 994040.0 847260.0 False True 848367.7581327645 903493.5425700839 889851.4438576966 899837.8701053932 859430.7536975367 821913.7447407327 794179.6282094042 890799.7120720298 749072.1614535758 793187.1414242205 1.0695682189318696 1.139067308816682 1.121868216698406 1.1344584690186406 1.0835157415113554 1.0362166780274975 1.001251264340218 1.1230637330712894 0.9443826334710453 1.0 19.597301764265453 2.9152462531845504 3.110342232528963 1.034655703517242 1.117986817825122 0.47624632868673744 0.04630846170642772 0.2581794217683038 4.8320304188516925 0.014683793025038243 0.016148900913683754 822.7090092845064 -2.9152462531845504 0.0833311143078801 DEDDDEEEEEEGGSWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEDDDEEEEEEGGSWGR 17 0 O00165-3;O00165;O00165-2;Q5VYD6;O00165-4;O00165-6 O00165-3 HAX1 HCLS1-associated protein X-1 0 ; 389.0 1.748e-121 681830000.0 590970.0 565600.0 470320.0 401620.0 490960.0 699310.0 642720.0 582310.0 963960.0 694710.0 False True 587788.2831829396 584425.6540875803 536536.9679052762 452465.0508209738 553480.8458520921 650968.3456986711 611629.1781711689 625764.9291102653 726404.9744022257 650373.0130288462 0.9037710227943748 0.8986007143283158 0.824968067796317 0.6957008389905401 0.851020621649846 1.0009153711145737 0.9404282864117566 0.9621631226609806 1.1169051603468165 1.0 19.310907869031155 2.7752302843503736 5.240687055715644 0.9935185062149159 0.8287080861364879 0.5992275163468428 0.0689814089712837 0.15446419699118133 11.346746277823625 0.022969472327241603 0.023897000654422726 595.9780767252694 -2.7752302843503736 -0.16481042007842794 DEDEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEDEWK 6 0 Q9UKY7;Q9UKY7-2;H0Y8K3 Q9UKY7 CDV3 Protein CDV3 homolog 0 99.171 0.090968 727060000.0 1074000.0 692440.0 624930.0 523110.0 511110.0 823650.0 699700.0 745130.0 1043300.0 799700.0 False True 1068217.7033326188 715487.44681118 712914.7120110644 589335.6723643228 576196.8289136861 766713.0141635482 665852.83788643 800735.3842934727 786192.6945037588 748662.4613423842 1.4268348668333901 0.9556876212656369 0.9522511797008995 0.7871847498639353 0.7696349939604828 1.0241104018876526 0.889389908360741 1.0695546065682517 1.0501297114511141 1.0 19.51395589257814 4.739001746980098 5.706412975602617 0.9412501214949928 1.4425886319354708 0.6891063137832981 0.09727958686813953 0.08540820974303064 11.823278019237321 0.025234621956618353 0.16680802240762022 54827.91704079424 -4.739001746980098 0.5013385104404781 DEDEWKELEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEDEWKELEQK 11 1 Q9UKY7;Q9UKY7-2;H0Y8K3 Q9UKY7 CDV3 Protein CDV3 homolog 0 ;;; 178.32 6.9247e-06 1179130000.0 1549660.0 985400.0 794570.0 694720.0 809110.0 1350820.0 1307320.0 1316260.0 2473400.0 1305450.0 False True 1541316.8027434119 1018198.4433131223 906438.5494737518 782671.4807687533 912145.3625293024 1257440.9928882455 1244079.9371526183 1414486.0050328488 1863863.7118619743 1222135.0633480255 1.2611673201822649 0.8331308656866279 0.7416844313349241 0.6404132441995678 0.7463539750103316 1.0288887297313112 1.0179561772366428 1.1573892669095673 1.5250881574054018 1.0 20.220972301661558 2.034692334601667 1.5159589845263184 1.2558535903799253 0.8370644080588076 0.38962611164864036 0.2003810827788895 0.39102098277055214 1.683679062683017 0.1321733979510625 0.06537760117068125 108.31593042029236 -2.034692334601667 -0.4187891823211177 DEDGSTLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEDGSTLFR 9 0 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 88.948 0.028938 1699560000.0 948990.0 913280.0 845460.0 837500.0 763970.0 1031950.0 1036680.0 818140.0 1378960.0 1057490.0 False True 943880.7432827005 943677.9727105809 964493.4191299414 943527.4141291893 861257.0510950454 960613.7254490062 986531.8278978198 879193.7612307406 1039133.7851173225 990000.0828372622 0.9534148124287148 0.9532099936861361 0.974235695380731 0.9530579143237182 0.8699565444749768 0.9703168132026444 0.9964967124755155 0.8880744319849354 1.0496299981503505 1.0 19.917069120345122 1.224107182449063 24.998429581404704 1.0248150293659959 0.944497571875824 0.4144492375146692 0.03801989066073289 258.76935657249754 447550.52388323145 0.03532765044516731 0.008993147867413365 16.753562974301683 -1.224107182449063 -0.08031745749017194 DEDHIAHIIELLGS(ph)IPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DEDHIAHIIELLGSIPR 17 0 P78362;P78362-2;H7C521;F8WBW4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 DEDHIAHIIELLGS(1)IPR;DEDHIAHIIELLGS(1)IPR;DEDHIAHIIELLGS(1)IPR 229.15 7.7472e-16 155046000.0 170159.0 161356.0 161311.0 158634.0 163100.0 179306.0 160790.0 47183.0 208544.0 135323.0 True False 169242.8828504422 166726.6369182381 184022.18665965303 178717.04813488945 183869.81823056116 166910.99826092317 153011.9734225512 50704.035050419334 157151.1255464313 126686.57028415077 1.335918104585514 1.31605612610934 1.4525784875768737 1.4107023951634121 1.451375767914086 1.3175113817238189 1.2077994777138101 0.40023212355258386 1.2404718605448886 1.0 16.95090407064903 1.9614602062306643 9.514564918930299 0.8105398549977447 1.3755886551547591 0.5422118840894019 0.20260774384219774 0.31109352710147986 74.6142867686125 0.08051068080604544 0.051653668326020044 91.50824077746736 -1.9614602062306643 0.5650488001570144 DEDHIAHIIELLGSIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEDHIAHIIELLGSIPR 17 0 P78362;P78362-2;H7C521;F8WBW4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 0 ; 216.71 3.0103e-15 215834000.0 251020.0 292370.0 270280.0 261670.0 273810.0 297170.0 296270.0 46526.0 336780.0 210310.0 False True 249668.53621094406 302101.358708603 308333.07468412555 294797.39517037023 308678.0805009807 276627.3373629356 281938.28823869204 49998.00637424094 253785.08162079542 196887.83574455042 1.268074969013694 1.534383054017418 1.5660341509577478 1.4972859753146524 1.567786447210843 1.404999635029978 1.4319741347783883 0.253941571276705 1.2889830428633773 1.0 17.58701445488337 1.868436684153879 9.430243043590181 0.7771044020678184 1.4792708079036863 0.5475996081219732 0.2558279905726709 0.21045985732452996 15.029018673649544 0.10066903692810511 0.06370034726170944 73.86465677690921 -1.868436684153879 0.7021664058358679 DEDHIALIIELLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEDHIALIIELLGK 14 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3 H3BLV9 SRPK1 SRSF protein kinase 1 0 119.56 0.00018029 101680000.0 264850.0 241690.0 211360.0 193410.0 200600.0 252110.0 265760.0 245130.0 363180.0 264710.0 False True 263424.0770276015 249734.5055453096 241117.65082594616 217895.6861692259 226145.22095064723 234682.22910310488 252904.17349821018 263422.8453449183 273679.15536267153 247815.98117036687 1.0629826042030133 1.0077417298347027 0.9729705472876029 0.8792640617451883 0.9125530156797209 0.9470019971866428 1.0205321396296283 1.0629776340526729 1.1043644323104587 1.0 17.91890970151098 2.0396047300855003 3.3570674286442794 1.0602927013892294 0.9601840762663119 0.3844213715879171 0.05262140284971358 0.25540680205090055 5.843477073894978 0.025678331726076784 0.01631099627523018 109.54806986141902 -2.0396047300855003 -0.10010862512291752 DEDLFR ddPTM_BT-474_Trastuzumab_2h_R1 6 DEDLFR 6 0 O75531;A0A0C4DFW4;Q5JUR7 O75531;A0A0C4DFW4 BANF1;TEX30 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed;Testis-expressed sequence 30 protein 0 ;;;;; 132.94 0.034151 6343420000.0 8353350.0 10184210.0 7920360.0 9931100.0 8176050.0 8956730.0 9030390.0 8407240.0 10923800.0 9708330.0 False True 8308376.49174444 10523185.273365062 9035477.842996746 11188376.24174137 9217221.504254932 8337572.336974542 8593555.536260162 9034630.939899698 8231775.86142064 9088736.067680527 0.9141399232935107 1.1578271384494732 0.9941401946005269 1.2310156394052576 1.0141367771731538 0.9173522341156856 0.9455171183613502 0.9940470129864123 0.9057118393714577 1.0 23.1156482481578 3.0023483870504823 24.999105922910164 0.9561383317164872 1.0805305272065786 0.31492581096323413 0.08443374590305987 82.98738652874609 883398.3496842834 0.022820232145219707 0.02711480697030472 1005.4220071787258 -3.0023483870504823 0.1243921954900914 DEDMLYS(ph)PELAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 DEDMLYSPELAQR 13 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR 256.52 7.5353e-24 1479520000.0 1569140.0 1465300.0 1284660.0 1237000.0 1189470.0 1389260.0 1342230.0 1362050.0 1656180.0 1380500.0 True False 1560691.9245878446 1514071.6247074457 1465528.9615351073 1393604.0731675315 1340941.9539589563 1293223.7261662723 1277301.2070834679 1463693.0873497564 1248036.6306750057 1292395.3080944866 1.2075964024420174 1.1715236160519646 1.1339633874838881 1.078310996983011 1.0375633102042494 1.0006409943355545 0.9883208327077003 1.1325428668631055 0.9656771599667261 1.0 20.301615987496678 3.87285878913203 1.298830611274226 1.0304220029537456 1.203374461298585 0.7160025820715297 0.043163841560553876 0.3003838341829627 0.933234061992973 0.014183579216326219 0.04529074784674438 7462.060900206985 -3.87285878913203 0.1729524583448394 DEDPYVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEDPYVR 7 0 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7ERB2;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 83.61399999999998 0.051530999999999993 341710000.0 789850.0 806400.0 705290.0 686040.0 692290.0 889440.0 816140.0 751760.0 906020.0 842600.0 False True 785597.5353605846 833240.536520906 804588.7015094233 772892.5936587341 780449.0279756915 827955.1063165499 776660.1902424331 807860.1485599306 682743.5110460024 788824.5466138474 0.9959090886977146 1.0563065514349437 1.0199843614948927 0.9798029193899915 0.9893822794002682 1.0496061638429948 0.984579135596589 1.0241316044585536 0.8655201134102452 1.0 19.589344920583503 1.2685728179266784 24.999668389080902 0.9327599023691981 1.0127267305618377 0.40089402697648224 0.03897246700222164 155.8293324655528 129803.46073255962 0.023886027347316097 0.00871953808476872 18.559779741942844 -1.2685728179266784 0.07996682819263956 DEDSLHQTDLFDSHMLWFLMHHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEDSLHQTDLFDSHMLWFLMHHLR 24 0 Q5TAQ9;V9GY98 Q5TAQ9 DCAF8 DDB1- and CUL4-associated factor 8 0 102.6 0.0010404 59969000.0 19832.0 31563.0 29334.0 27994.0 25103.0 29228.0 30227.0 17252.0 35327.0 24140.0 False True 19725.22671554235 32613.555374763604 33463.97222430123 31538.03752971051 28299.71825286189 27207.537155311336 28764.804531646594 18539.431843880942 26621.134207547453 22599.364532706215 0.8728221843138837 1.4431182490801753 1.480748371303607 1.395527625746648 1.2522351330678356 1.2039071769445593 1.2728147506102503 0.8203519093225093 1.1779594142579035 1.0 14.463994585888907 1.76278772500993 24.999999999999844 0.9861873353060204 1.2899638974708092 0.3295759262358522 0.17849310799745144 14.425901327843402 14896.73943891814 0.08147951767023151 0.045186622587103 57.91455517607834 -1.76278772500993 0.30377656216478877 DEDYKQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DEDYKQR 7 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;; 127.12 0.003544 1267230000.0 2081120.0 2519360.0 2254470.0 2480220.0 2485280.0 2237540.0 2977750.0 2546070.0 4560530.0 3089960.0 False True 2069915.4811541692 2603215.374614722 2571879.779795473 2794215.597697316 2801765.6765913474 2082864.1264026049 2833704.8563903356 2736070.6720814975 3436648.489471128 2892756.1073521487 0.7155513304053976 0.8999083496871589 0.8890759138867098 0.9659354242120914 0.9685454191836144 0.7200275616422882 0.9795865089311435 0.9458352417362722 1.1880187481884967 1.0 21.464013261915508 1.553966289629418 2.330218064487352 1.08783277718828 0.8767253122105293 0.4185116396001287 0.099290715129889 0.2562741128739949 2.9744450510680878 0.07338199389510007 0.026150137987540237 35.80686423789852 -1.553966289629418 -0.2111074649777508 DEELEER ddPTM_BT-474_Trastuzumab_2h_R1 2 DEELEER 7 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 147.34 0.005021 784300000.0 1023040.0 1055920.0 929230.0 851250.0 907900.0 1041130.0 1064160.0 1029050.0 1312430.0 1095270.0 False True 1017532.0663104292 1091065.6588828794 1060057.50698805 959018.1627193701 1023515.6834550982 969159.1336564008 1012682.5153140258 1105842.9364100203 988999.2121609959 1025368.9308921769 0.9923570294109372 1.0640713074205783 1.0338303366239996 0.9352908341828977 0.9981926042605307 0.945180904606825 0.9876274624713735 1.0784829763154835 0.9645301143467108 1.0 19.96771165857064 -0.28331730183265247 6.807947349260582 1.0000001614338552 1.0042473703231272 0.0 0.044989503162971935 0.0 0.0 0.04537412148575474 0.010694782997653135 0.5208140577798865 0.28331730183265247 0.004247208889271992 DEEPSGWEEPS(ph)PQSISR ddPTM_BT-474_Trastuzumab_2h_R1 3 DEEPSGWEEPSPQSISR 17 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 DEEPSGWEEPS(1)PQSISR;DEEPSGWEEPS(1)PQSISR;DEEPSGWEEPS(1)PQSISR 392.82 5.435799999999997e-122 712540000.0 684190.0 565020.0 495010.0 497460.0 495230.0 603000.0 588740.0 564320.0 735880.0 618010.0 True False 680506.3970606544 583826.3491381971 564703.1052959493 560438.3849942773 558294.6050418193 561316.0293093177 560260.396994794 606432.4239588976 554532.2342868067 578568.0726950194 1.1761907183899685 1.009088431753042 0.9760357198168818 0.9686645555530008 0.9649592353778448 0.9701814804516602 0.9683569201892758 1.0481608864693892 0.9584563346258431 1.0 19.142127187204064 4.738793301463556 3.415715757201435 0.9848762241442365 1.2006928271535884 0.8445152590954389 0.024840264086767774 0.12166553334218895 2.407437188792741 0.006618590370553521 0.0684526723256171 54801.60795389657 -4.738793301463556 0.2158166030093519 DEESGGGSNPFQHLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DEESGGGSNPFQHLEK 16 0 Q9Y678;D6RG17 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ; 248.97 1.7181e-20 921810000.0 759100.0 665690.0 622770.0 577070.0 618500.0 837370.0 762640.0 673580.0 970380.0 726250.0 False True 755013.0899439381 687847.0892318966 710450.6027861217 650127.00283168 697262.3088632863 779484.5828569549 725748.1896322804 723845.9599699347 731242.8514258184 679900.1032260938 1.1104765043591502 1.0116884612431953 1.04493380632694 0.9562095957139264 1.0255364068262522 1.1464692815287678 1.0674335629434966 1.064635755363648 1.0755151351736905 1.0 19.374963263200502 DEESGSGSNPFQHLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEESGSGSNPFQHLEK 16 0 Q9UBF2;Q9UBF2-2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 158.17 9.5755e-09 296370000.0 183570.0 161160.0 148850.0 131360.0 151270.0 196640.0 174150.0 182180.0 243810.0 191260.0 False True 182581.67951654416 166524.11317672255 169806.78617260643 147990.16253135575 170533.33785246467 183046.7396407699 165725.69918239504 195775.19669129545 183726.29238662045 179053.62305407602 1.0197039099365368 0.9300237009246698 0.9483571640509226 0.8265130858964033 0.9524148964076636 1.0223012331087427 0.9255646233550058 1.0933886360521694 1.0260964802210857 1.0 17.450032185551354 2.214315366390968 1.3603691231425477 1.0409111083963565 0.9333025283469605 0.29441667291908113 0.058930799148470346 0.48018877605325205 1.7227206038167333 0.03652643395822708 0.02075828950271137 163.80055404141848 -2.214315366390968 -0.107608580049396 DEESHEFVIEAGALMLADNGVCCIDEFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEESHEFVIEAGALMLADNGVCCIDEFDK 29 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 223.64 1.4896e-34 55838000.0 64623.0 47062.0 42886.0 37301.0 26427.0 54907.0 53858.0 46451.0 84366.0 61613.0 False True 64275.07694829029 48628.43022042025 48923.97602820563 42023.30277544231 29792.321804899064 51111.4083271753 51252.68278246013 49917.409493398656 63575.129746481434 57680.80559045684 1.1143234961843955 0.8430608713354328 0.8481846868709475 0.7285491654505424 0.5165032197440068 0.8861077407634467 0.8885569862938907 0.8654076340025559 1.102188658700006 1.0 15.81580369345622 1.3853140599922686 3.0884608758804455 1.0505978293926919 0.8207560246534477 0.2584514281621857 0.14317540439134113 0.3445931906231269 5.529673896607227 0.12060241128249197 0.03887209149803868 24.283655324701122 -1.3853140599922686 -0.2298418047392442 DEEVHAGLGELLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DEEVHAGLGELLR 13 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PIG2;E9PRS3;E9PNX1;E9PJH8 P50454 SERPINH1 Serpin H1 0 ;;;;; 203.29 8.707000000000001e-08 4061050000.0 4103270.0 4907700.0 4205390.0 3725230.0 4050250.0 4628810.0 4546670.0 4377410.0 5565690.0 4279510.0 False True 4081178.4502361547 5071049.827732707 4797472.358094846 4196843.736043564 4566025.329787436 4308831.259746708 4326730.202133913 4704074.562237584 4194100.2759250626 4006388.0079271556 1.0186677980667416 1.265741065942435 1.1974557503173502 1.0475380137269699 1.1396862512450032 1.0754902548682577 1.0799578556976805 1.174143531013463 1.0468532422787045 1.0 21.93387071838418 -4.999999999949931 0.1381300769072035 0.5613967120084103 1.170900221230806 0.21442394509040497 0.07256354149496656 206.9647687473914 1.7624112306267603 24.807487450289557 0.4533671559989622 1.0000000001152887e-05 4.999999999949931 0.6095035092223956 DEEVSSADISSSSEVISQHLVSYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEEVSSADISSSSEVISQHLVSYR 24 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ; 207.24 7.735699999999998e-25 430770000.0 242362.0 320480.0 270681.0 277058.0 288149.0 340540.0 338766.0 292684.0 361030.0 377060.0 False True 241057.14992094963 331146.98306574876 308790.531998571 312133.51439260313 324843.067157069 316999.27134493407 322378.5943682066 314525.5662992373 272058.99405414745 352995.70798269246 0.6828897475795053 0.9381048425721512 0.8747713499499862 0.884241670178911 0.9202465067167225 0.8980258518057582 0.9132649125127975 0.8910181035817542 0.7707147364734719 1.0 18.429291116545933 4.745658678650602 24.88155286472993 0.895467410384356 0.6828896419221082 0.5842119541756284 0.05460740531072734 533.5733620447857 1870338.482377477 0.012032977638063392 0.12214538266668211 55674.80167337215 -4.745658678650602 -0.21257776846224774 DEEWFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DEEWFR 6 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ;;; 153.67 0.0235 1183750000.0 2103140.0 2296920.0 2057460.0 1922320.0 1937430.0 2188140.0 1992300.0 1957740.0 2228610.0 2061540.0 False True 2091816.9279208232 2373371.5936825373 2347132.484237093 2165685.5149000916 2184150.226452705 2036879.032127515 1895924.837674909 2103836.500002285 1679398.9273440242 1929970.7522268072 1.0838593929505291 1.229744850249224 1.216149250722563 1.1221338522365252 1.1317012052812845 1.055393730592734 0.9823593624345779 1.090087244884344 0.8701680714105785 1.0 20.880147553637702 2.655576449743455 0.9285714029684471 0.9841395227983502 1.1812118133824692 0.6251643032031877 0.06305156415613848 0.37903190793152747 0.6849403763451789 0.03805484774566585 0.03237024531073253 452.4561020932193 -2.655576449743455 0.19707229058411901 DEFEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DEFEER 6 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 116.0 0.055721000000000014 328070000.0 667100.0 707480.0 677370.0 624080.0 677600.0 804980.0 727760.0 658560.0 930450.0 786120.0 False True 663508.4077217774 731028.0441193092 772737.8081944144 703088.4640116356 763888.3435501418 749333.6273190952 692555.4684868203 707705.0912999214 701153.0648912314 735949.1485688076 0.9015682795640094 0.9933132547825234 1.049988045637595 0.9553492457718366 1.037963485705048 1.0181866896324512 0.9410371217000869 0.9616222706095765 0.9527194457045791 1.0 19.48924655914015 -0.14752175690426614 7.384922445002504 0.9999999993739358 0.980712655566286 0.018833215323641905 0.043896652432103084 0.0 0.0 0.04245607042563567 0.010006991770975644 0.7119971300976199 0.14752175690426614 -0.019287343807649848 DEFEFLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEFEFLEK 8 0 Q14258;A0A3B3IUA7 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 ;;; 163.99 0.00077406 202794000.0 350992.0 323971.0 270777.0 261172.0 277839.0 353907.0 340224.0 316999.0 511055.0 347245.0 False True 349102.2980708776 334754.1788903951 308900.04796412453 294236.3484214316 313220.14976922644 329442.24209746736 323766.06533810636 340655.0750683055 385112.3430361532 325083.52680859866 1.0738849227399352 1.0297482071046014 0.9502174748645367 0.9051099922226169 0.9635066804035349 1.0134079857311102 0.9959473139613501 1.0479001455797388 1.1846565921591532 1.0 18.31045092559371 1.5808418193363798 3.6369339542737302 1.098486157136539 0.9869011076961401 0.3156555409320745 0.06025020471457135 0.20133963847307457 6.130334422216084 0.03815538074047454 0.01601899222596789 38.092705518130785 -1.5808418193363798 -0.11158504944039882 DEFEGLFK ddPTM_BT-474_Trastuzumab_2h_R1 6 DEFEGLFK 8 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;;;; 163.77 0.00077691 3190717000.0 3592360.0 3297380.0 2924120.0 2819010.0 2997490.0 3680040.0 3754730.0 3381450.0 4827470.0 3687230.0 False True 3573019.1329087215 3407131.2999916966 3335810.679093332 3175896.3769603916 3379202.58398482 3425647.496682358 3573099.365438498 3633790.969655185 3637804.703283869 3451907.824603579 1.0350853251184513 0.987028470374343 0.9663672521372787 0.9200408986370067 0.978937664528424 0.9923925176292224 1.035108568071002 1.052690614666831 1.0538533727219783 1.0 21.718962510445106 2.3128133466247873 2.8334538067123303 1.0422754332359154 0.9747810342274906 0.45323522496802615 0.029842618694869767 0.2233048026642 3.662893594276459 0.012388155560426318 0.009499372865131809 205.50071943202053 -2.3128133466247873 -0.0674943990084248 DEFSHQVQEWNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEFSHQVQEWNR 12 0 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ; 200.93 1.5425e-07 858130000.0 468730.0 495480.0 456230.0 493590.0 404220.0 492120.0 480580.0 429320.0 567500.0 490020.0 False True 466206.4097607983 511971.7522760146 520463.2183777508 556078.4433910775 455695.0210003525 458100.9027258733 457332.5094061181 461358.0384427874 427647.22911040246 458746.50407277135 1.01626149871835 1.1160232235683698 1.1345333724770779 1.2121693319822362 0.993348215091935 0.9985926838871438 0.99691769930866 1.0056927613547586 0.932208148320983 1.0 18.80733763822134 3.174595303327983 12.639830657603127 0.9903094252345077 1.120510378661974 0.6416763572337079 0.04828368468904617 0.5462928666287183 106.78449442344247 0.01412499104285537 0.016887423118017053 1494.8420405266393 -3.174595303327983 0.13020095342746618 DEFSYQEMIANLPLCSHPNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEFSYQEMIANLPLCSHPNPR 21 0 P19623;K7ESL0 P19623 SRM Spermidine synthase 0 ; 220.63 4.6078e-25 215348000.0 274424.0 289160.0 259961.0 257334.0 274092.0 286354.0 296988.0 289418.0 318568.0 303928.0 False True 272946.5316753725 298784.515799089 296561.24917848135 289912.4580149506 308995.9915294358 266559.0219848102 282621.5558356654 311015.84079482604 240061.1849924981 284531.05483414803 0.959285557896209 1.0500945704265892 1.0422807779324674 1.0189132366726696 1.0859833620254502 0.9368363047056018 0.9932889610253767 1.09308223306632 0.8437082030726972 1.0 18.11822659695167 2.7382668114898596 24.999859945106397 0.9901881208402504 1.0322756141296647 0.13731800747626643 0.06618467636959915 73.18830559403918 6227249.890688852 0.020861945523434816 0.02080915436414319 547.3521287721665 -2.7382668114898596 0.0420874932894143 DEFTNTCPSDKEVEIAYSDVAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEFTNTCPSDKEVEIAYSDVAK 22 1 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 ;;; 286.38 3.4586e-46 1449490000.0 1173650.0 866450.0 779420.0 702144.0 699634.0 1168370.0 1110470.0 1052280.0 1777170.0 1137490.0 False True 1167331.198804773 895289.2644699148 889155.5611599123 791035.358407554 788728.2428443918 1087603.3319471453 1056752.3236926459 1130806.4769695702 1339210.2663579448 1064894.4143458146 1.0961943109842371 0.8407305479387912 0.834970631061238 0.7428298503129086 0.7406633298277961 1.0213250415209298 0.9923540864300894 1.0618953970795748 1.2575991087160014 1.0 20.022278961792953 2.2680602237084364 1.6634209346589595 1.103905645756608 0.8480746612287933 0.4578556903002803 0.11619161426909705 0.3349580322613905 1.8538165738268906 0.062142357869266786 0.039439632014841686 185.37886708623714 -2.2680602237084364 -0.25583098452781483 DEGGNQQDEAITWFNVIYPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEGGNQQDEAITWFNVIYPR 20 0 B2WTI3;B2WTI4;K7EJU9;Q6NYC1-2;Q6NYC1;Q6NYC1-3 B2WTI3 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 0 73.02199999999998 0.018577 0.0 15444.0 15798.0 17110.0 18294.0 14930.0 17634.0 18040.0 17276.0 18553.0 16905.0 False True 15360.851219989701 16323.826879907325 19518.939277213954 20610.018524273913 16831.247002956945 16415.003085970995 17167.33628050765 18565.222845750457 13980.861747463072 15826.108426901345 0.9706019196658102 1.0314492002443225 1.2333378965125443 1.3022796235390908 1.0635114172696465 1.0372103263281478 1.0847477988541059 1.1730756762788976 0.883404900960889 1.0 13.950018926027262 3.0524640707408093 24.99999567434635 1.059790489842063 1.1402239839792194 0.13180381365690574 0.1114400614331392 246.8959628824679 117648.01602378426 0.03424488477501087 0.040930462765393215 1128.4025807213065 -3.0524640707408093 0.0804334941371565 DEGLHCDFACLMFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEGLHCDFACLMFK 14 0 P31350;P31350-2;A0A286YFD6;C9JXC1 P31350 RRM2 Ribonucleoside-diphosphate reductase subunit M2 0 117.79 0.00028309 39197000.0 86527.0 87822.0 84481.0 59997.0 53022.0 82715.0 83366.0 66861.0 116620.0 92056.0 False True 86061.14824605343 90745.10218047987 96375.19047798439 67592.61404836894 59774.03741398415 76997.10674016632 79333.26809095353 71850.50733327857 87880.56362793854 86180.90726689316 0.9986103764205122 1.0529606273400194 1.1182893466127086 0.7843107736037375 0.6935879339129057 0.8934357873689402 0.9205434313341211 0.8337172305550827 1.0197219594797455 1.0 16.395080666006073 3.741946870490541 24.9885480640149 0.8649262798572386 1.0562541722417882 0.4223510642413263 0.09493387100855986 265.82696090009335 1961636.6821021177 0.025024220847941793 0.04292546211032518 5520.099048987109 -3.741946870490541 0.1913278923845496 DEHLDFIQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 5 DEHLDFIQSHLR 12 0 O43237;O43237-2;B4E2E0 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 ;;;; 201.04 8.844900000000003e-08 958205000.0 373733.0 380228.0 336688.0 329592.0 318960.0 380500.0 369281.0 168362.4 407420.0 348610.0 False True 371720.86305364023 392883.65912732034 384090.7438554422 371318.3134061707 359577.66537596413 354196.9306006559 351417.4672395867 180926.45721494418 307016.8001482997 326361.4113399632 1.1389853399868624 1.2038300040260042 1.176887740123613 1.1377518925464412 1.1017775168320998 1.0852904733632773 1.0767739537488492 0.5543745397842922 0.9407264139708214 1.0 18.31611095895326 1.9168173728260844 8.038889246833463 0.788213362218639 1.1382813038549244 0.5843320300962858 0.11522566956339793 0.18087202753970744 15.866133478694334 0.046953211608699044 0.029444265236834903 82.56906615773823 -1.9168173728260844 0.3500679416362854 DEHLLK ddPTM_BT-474_Trastuzumab_2h_R1 5 DEHLLK 6 0 O00505;O00629 O00505;O00629 KPNA3;KPNA4 Importin subunit alpha-4;Importin subunit alpha-3 0 ;;;; 121.68 0.019546 2464860000.0 7181880.0 6964440.0 6132370.0 5683070.0 5884240.0 7544500.0 7347940.0 3605410.0 9874990.0 6975700.0 False True 7143213.556061872 7196247.175307109 6995754.392484438 6402546.079301712 6633563.085377055 7022966.472842703 6992492.0703433035 3874464.0021010195 7441431.032586665 6530504.853802762 1.0938225628761804 1.1019434693654167 1.0712425071410454 0.9804059904455107 1.0157810512175458 1.0754094254677993 1.0707429558484323 0.5932870564891917 1.139487864901205 1.0 22.638763095846816 DEIALVLFGTDGTDNPLSGGDQYQNITVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEIALVLFGTDGTDNPLSGGDQYQNITVHR 30 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 128.91 1.0667e-05 47933000.0 33802.0 28768.0 27825.0 27145.0 30703.0 32518.0 32835.0 36360.0 39367.0 37588.0 False True 33620.01378775523 29725.525489376774 31742.51814076437 30581.554216760458 34612.845059061445 30270.10719913833 31246.64560811908 39073.3678323389 29665.530340773945 35189.10165929416 0.9554098343648821 0.8447366965256318 0.9020553706684502 0.8690632262470175 0.9836240036528323 0.8602125593377681 0.8879637198656989 1.110382646611805 0.8430317610264618 1.0 15.102841063622126 DEIIWLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEIIWLLR 8 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 ; 117.93 0.0046146 128812000.0 153405.0 183917.0 167625.0 162432.0 136311.0 167610.0 177900.0 153870.0 179275.0 169318.0 False True 152579.08452489777 190038.56616482555 191225.1429773809 182995.87454547183 153669.39787140433 156023.5152115003 169294.29735600395 165352.5607360281 135095.0784119248 158511.98027956698 0.9625713101040982 1.198890871400731 1.2063765946278497 1.1544608440492807 0.9694497387539932 0.9843010915409813 1.0680220956007251 1.0431549744340864 0.8522704604008992 1.0 17.274232357304637 3.2420883404407657 24.986308290440117 0.9975371189623096 1.1408690462956421 0.41528131799304413 0.08291820372157636 91.17772057533898 645791.7277164848 0.0233990608383126 0.030464701501219216 1746.1773091375667 -3.2420883404407657 0.14333192733333255 DEILEWESR ddPTM_BT-474_Trastuzumab_2h_R1 4 DEILEWESR 9 0 Q13596-2;Q13596;H0YK42;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 0 ;;; 212.2 9.1029e-06 1577890000.0 1492650.0 1646360.0 1346320.0 1413600.0 1366120.0 1688090.0 1639640.0 1365920.0 2000890.0 1584580.0 False True 1484613.7382490048 1701158.0973543634 1535870.1535767799 1592561.6150603285 1540087.2843723744 1571396.3116364288 1560324.3491669367 1467851.8864012205 1507797.470052358 1483450.7477728107 1.000783976466991 1.1467573830195639 1.0353361282015392 1.0735520659862365 1.0381789127037722 1.0592844514694242 1.051820797899452 0.9894847460254345 1.0164122215153422 1.0 20.50052559784544 1.829853187789906 4.915588684729714 1.0021367748292425 1.0610730832416728 0.3405910145614305 0.03566710405098504 0.227634559337073 8.437309789578249 0.015682703844266913 0.008931778673419278 67.585446578614 -1.829853187789906 0.05893630841243036 DEILPTT(ph)PISEQK ddPTM_BT-474_Trastuzumab_2h_R1 6 DEILPTTPISEQK 13 0 P23396;P23396-2;E9PPU1;E9PL09;H0YEU2;E9PSF4 P23396 RPS3 40S ribosomal protein S3 1 DEILPT(0.014)T(0.986)PISEQK;DEILPT(0.187)T(0.813)PISEQK;DEILPT(0.018)T(0.982)PISEQK;DEILPT(0.02)T(0.98)PISEQK;DEILPT(0.182)T(0.818)PISEQK;DEILPT(0.015)T(0.985)PISEQK 342.97 3.430299999999998e-62 43567700000.0 16548200.0 13281100.0 11635900.0 11117600.0 10819100.0 14612300.0 14063000.0 13949400.0 21599600.0 14037000.0 True False 16459106.329877846 13723153.384905528 13274133.57894413 12525087.020086791 12196848.255170224 13602186.094654307 13382718.964123012 14990375.061617939 16276667.999811532 13141146.642319677 1.2524863147689889 1.044288885774363 1.0101198883357851 0.9531197970009001 0.9281418575675551 1.0350836547892937 1.0183828952205265 1.1407204766548313 1.2386033306556552 1.0 23.647587828990076 1.7103569408244086 5.582361934673186 1.142535758251857 1.0266894386225358 0.1458856262294902 0.09820708307440107 0.23190681052746484 17.406108910474934 0.050945936411831635 0.02569729937656141 51.32830711672685 -1.7103569408244086 -0.11584631962932113 DEILSLIHVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEILSLIHVFR 11 0 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PPU6;A0A1W2PRF6;A0A1W2PSE4 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 60.518 0.093137 698520000.0 159290.0 852190.0 829700.0 1359500.0 1054400.0 490360.0 587040.0 336190.0 165430.0 483890.0 False True 158432.40033878278 880554.6289902665 946514.5481183185 1531612.5606073264 1188671.5900815665 456462.5673832786 558642.6324894245 361278.20493822935 124661.99314842987 453007.72592092794 0.34973443337352045 1.9437960516019244 2.0894004538093283 3.3809855173963808 2.6239543435271298 1.0076264515253626 1.2331856622395334 0.7975100296662272 0.2751873445314915 1.0 18.789176129681305 2.645638261831184 5.929277927635097 0.8623722001003795 2.1404866467592454 0.39931315183903526 0.7440867843697743 0.25150009874567675 13.070945069056448 0.2581799221010064 0.24308566873176543 442.219879425705 -2.645638261831184 1.2781144466588659 DEKDEHGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DEKDEHGR 8 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;;; 129.38 0.00065671 522996000.0 2327280.0 1604190.0 1400661.0 1261335.0 1362450.0 1186006.0 1727760.0 1809600.0 2788720.0 1971350.0 False True 2314750.1830651155 1657584.4943966663 1597861.8940363391 1421019.8816724105 1535949.9316261674 1104020.1967778222 1644181.6481158477 1944641.5409626092 2101477.322933502 1845536.755242354 1.2542422558044068 0.8981584840768961 0.8657979254531344 0.7699764730428269 0.8322510658556177 0.5982108964461363 0.8908961815284656 1.0536997084662456 1.1386808292840194 1.0 20.815609039542665 1.7344997985241517 4.194248601157968 1.0755693792578644 0.8561547048784384 0.23609368899010064 0.1565426471096781 0.2597535917313627 10.250827309747015 0.08620100284520957 0.042945294050769696 54.262499959692484 -1.7344997985241517 -0.21941467437942608 DELDVSNFAEEFTEMDPTYSPAALPQS(ph)SEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DELDVSNFAEEFTEMDPTYSPAALPQSSEK 30 0 O75582-3;O75582;O75582-2 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 1 DELDVSNFAEEFTEMDPT(0.041)Y(0.037)S(0.151)PAALPQS(0.385)S(0.385)EK 59.228 0.02343 31954000.0 18195.0 14095.0 11482.0 10280.0 11155.0 16895.0 15724.0 12373.0 19155.0 13226.0 True False 18097.040141654546 14564.143554392578 13098.565796666904 11581.446945967855 12575.523129134945 15727.088416552115 14963.370048486813 13296.336088820943 14434.5069138498 12381.90535665172 1.46157151265355 1.1762441348793329 1.0578796574010465 0.9353525658913353 1.0156371549374839 1.2701670674702192 1.2084868699507785 1.0738521823442932 1.1657742890188865 1.0 13.595945716483055 4.708568750664096 3.0020583735530173 1.0971608011345002 1.508345042428692 0.5731111129115529 0.09579428999400254 0.26685376243703335 3.6777349024638584 0.025219120309581792 0.2531089726868973 51117.39936505306 -4.708568750664096 0.41118424129419173 DELEVIHLIEEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 DELEVIHLIEEHR 13 0 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 ;; 216.84 1.5497999999999994e-11 542910000.0 490208.0 493804.0 442957.0 431370.0 441390.0 505068.0 505491.0 236748.0 589550.0 435360.0 False True 487568.7745952286 510239.9676291782 505321.4953487351 485981.3977706369 497598.4001765017 470153.83796218724 481038.46916685614 254415.33794198473 444263.3020652651 407574.95206955203 1.196267759143417 1.251892357561037 1.2398247065548393 1.1923730722483283 1.2208758110620774 1.1535395773829502 1.1802454167614493 0.6242173044494872 1.0900162039139545 1.0 18.636705866383565 1.8763731978761364 8.954198507677901 0.8693559499721786 1.2082393948891716 0.5845396344954427 0.11504676137889255 0.18481557338646104 12.684275226973831 0.04553286393999748 0.028722490575596196 75.22690560932146 -1.8763731978761364 0.33888344491699307 DELHIVEAEAMNYEGS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 34 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.005)EGS(0.995)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.121)EGS(0.879)PIK;DELHIVEAEAMNY(0.003)EGS(0.997)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.011)EGS(0.989)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.002)EGS(0.998)PIK;DELHIVEAEAMNY(0.047)EGS(0.953)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.002)EGS(0.998)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.001)EGS(0.999)PIK;DELHIVEAEAMNY(0.01)EGS(0.99)PIK;DELHIVEAEAMNY(0.019)EGS(0.981)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.048)EGS(0.952)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK 317.14 6.181699999999997e-62 21020074700.0 11088349.8 7412715.1 6936525.8 5711121.9 5935759.0 8244727.7 7370982.600000001 7872433.1 10304660.4 8175693.5 True False 11028651.356708266 7659442.841022604 7913128.339276905 6434149.346965479 6691642.724650016 7674789.080100401 7014420.011750034 8459914.033327274 7765214.919795056 7653913.741266639 1.4409165989481278 1.0007223885639258 1.0338669348483367 0.8406352050030678 0.8742772587795877 1.0027274071199956 0.9164487932404141 1.1053056409187139 1.0145417341102667 1.0 22.867766211413926 4.746385984714393 4.17956250367519 0.9758352033430093 1.4818130884381306 0.779330352958327 0.07424251174878768 0.11419913181895633 4.433569125050218 0.019526001358687987 0.17477581122409253 55768.117493985985 -4.746385984714393 0.5059778850951213 DELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_BT-474_Trastuzumab_2h_R1 33 DELHIVEAEAMNYEGSPIKVTLATLK 26 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.037)EGS(0.963)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.03)EGS(0.96)PIKVT(0.01)LATLK;DELHIVEAEAMNY(0.016)EGS(0.984)PIKVT(0.001)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.023)EGS(0.967)PIKVT(0.01)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.006)EGS(0.994)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.007)EGS(0.993)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.139)EGS(0.861)PIKVTLATLK;DELHIVEAEAMNY(0.12)EGS(0.879)PIKVT(0.001)LATLK;DELHIVEAEAMNY(0.127)EGS(0.869)PIKVT(0.004)LATLK;DELHIVEAEAMNY(0.001)EGS(0.999)PIKVTLATLK;DELHIVEAEAMNY(0.315)EGS(0.608)PIKVT(0.077)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.029)EGS(0.967)PIKVT(0.004)LATLK;DELHIVEAEAMNY(0.111)EGS(0.864)PIKVT(0.025)LATLK;DELHIVEAEAMNY(0.016)EGS(0.984)PIKVTLATLK;DELHIVEAEAMNY(0.015)EGS(0.968)PIKVT(0.017)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.004)EGS(0.995)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.002)EGS(0.998)PIKVTLATLK 328.81 3.9977999999999977e-95 58764155800.0 10086167.3 7486225.6 7073684.2 6188260.6 6908597.0 10474262.5 9703078.7 9917102.1 15116299.4 10244305.8 True False 10031864.495935341 7735400.09357706 8069597.449794722 6971693.757463355 7788365.877487429 9750201.387136806 9233703.713920781 10657166.616726086 11391089.960904393 9590505.433252547 1.046020417354908 0.8065685533899601 0.841415241976249 0.7269370531078421 0.8120912846244084 1.0166514637831865 0.9627963591893031 1.1112205389900696 1.187746572918753 1.0 23.193175418648085 2.3163428244607216 1.531239010717608 1.1003725747265425 0.8403735619160501 0.5468971527305568 0.0951871249738577 0.28331785424361294 1.3307039339732303 0.05085978952888553 0.03303410094067808 207.17761272772088 -2.3163428244607216 -0.2599990128104924 DELHIVEAEAMNYEGSPIK ddPTM_BT-474_Trastuzumab_2h_R1 15 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ;;;;;;;;;;;;;; 282.49 9.353699999999999e-40 24550763600.0 10536776.0 9104250.0 8317556.0 7553118.0 7791747.0 10277562.0 9524751.0 9832916.0 13046033.0 9765568.0 False True 10480047.168761866 9407279.457614651 9488595.58730723 8509341.96436136 8783979.795147285 9567098.329718627 9064002.40604776 10566698.122455746 9831012.975035902 9142321.089516604 1.1463223689199908 1.0289815207214579 1.037875993896965 0.9307638488128497 0.9608041228413837 1.046462734795993 0.9914333917282065 1.1558003726835255 1.0753300916447808 1.0 23.124129058373157 1.757973797877249 24.99999999999992 1.0922795381841048 1.0166468286188257 0.1233660242122313 0.0650194318183509 13.065689947808947 16841.638186660795 0.030253049107087336 0.016777012367302935 57.27614737446035 -1.757973797877249 -0.07563270956527912 DELLAQHAAGALGLPDLVAVLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DELLAQHAAGALGLPDLVAVLTR 23 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ; 153.17 5.377600000000001e-08 230470000.0 325440.0 329240.0 341580.0 303020.0 285770.0 427360.0 391720.0 315140.0 424420.0 396320.0 False True 323687.867199783 340198.55437021726 389671.4949334158 341382.3009306592 322161.1156085067 397817.6090972303 372771.00708428235 338657.3470484949 319827.377936629 371026.51829337724 0.8724116774419807 0.916911696595272 1.0502524097894685 0.9201021600852859 0.8682967381694486 1.072208021483437 1.0047017900470545 0.9127577958746133 0.8620067897242207 1.0 18.501162778380248 4.473095277329272 24.996968638256476 0.9589904788988494 0.8835366472732123 0.14612170445321726 0.0680609833998779 188.97755702376165 1173355.7748175068 0.016861879726317076 0.04661834613625894 29723.18039705996 -4.473095277329272 -0.07545383162563701 DELNEELIQEES(ph)S(ph)EDEGEYEEVRK ddPTM_BT-474_Trastuzumab_2h_R1 1 DELNEELIQEESSEDEGEYEEVRK 24 1 O60524-4;O60524-3;O60524;G3V5V3;O60524-5 O60524-4 NEMF Nuclear export mediator factor NEMF 2 DELNEELIQEES(1)S(1)EDEGEYEEVRK 92.822 0.029372 241450000.0 564610.0 483210.0 431280.0 425970.0 434110.0 614990.0 617000.0 576340.0 829440.0 615890.0 True False 561570.2024940682 499293.3527433868 492000.47524703876 479897.75832431216 489391.3353284422 572477.1888307414 587153.3528311094 619349.41739522 625035.625926576 576583.3729100432 0.9739618394817685 0.865951701353145 0.8533032660374672 0.8323128637966887 0.8487780923311424 0.992878420932297 1.0183320928380557 1.0741714841157048 1.0840333857911857 1.0 19.137169708484176 2.5291354208290273 2.5753357593942274 1.0524077303560144 0.8707185861679382 0.7741749343028677 0.043367968119797394 0.1272567847638181 1.6837161181723599 0.016476836217583196 0.014437524443386683 338.170267337867 -2.5291354208290273 -0.18168914418807625 DELPYTFAAPESYEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DELPYTFAAPESYEELR 17 0 P78316;E9PFK5;P78316-2 P78316 NOP14 Nucleolar protein 14 0 132.79 5.2225e-05 23893000.0 9166.2 12094.0 15411.0 9994.1 10462.0 13910.0 14221.0 14294.0 14043.0 12860.0 False True 9116.850197660555 12496.541479022622 17580.7348451867 11259.352035281834 11794.273686867753 12948.434440617926 13533.075900504384 15360.690863461283 10582.290816559256 12039.263790000074 0.7572597757375411 1.0379821970013123 1.4602832159711814 0.9352193150410043 0.9796507404933006 1.0755171301564983 1.1240783603184346 1.275882905416527 0.87898155577827 1.0 13.555459552461832 2.431062675661818 5.967404335119549 1.1124818058562318 1.050129107467009 0.0 0.191402295033976 1.058016013002509 89.5841885121561 0.06856139017247882 0.05755671911005798 269.81287876235837 -2.431062675661818 -0.06235269838922286 DELRETLK ddPTM_BT-474_Trastuzumab_2h_R1 3 DELRETLK 8 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;; 140.45 0.00059228 972700000.0 579330.0 771000.0 761520.0 713100.0 626660.0 650840.0 789800.0 618870.0 1217850.0 793830.0 False True 576210.9516496133 796662.2689206583 868735.396749501 803378.3868842103 706461.4364951783 605848.9627125646 751594.3566710062 665053.2219581848 917727.185853927 743167.0897679449 0.7753450867012103 1.0719827073739465 1.168963761596016 1.0810198647723575 0.9506091513225807 0.8152257696203178 1.011339666434493 0.8948905718710564 1.2348867414735614 1.0 19.50332708961291 1.2475471527481996 24.999833393621355 1.1174434013375814 0.9767273915188858 0.17546177782676564 0.12637496384407587 310.922778872832 864978.6611964416 0.08885780900300934 0.031414191028668804 17.68264193441046 -1.2475471527481996 -0.1407160098186956 DELTES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 DELTESPK 8 0 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 DELTES(1)PK;DELT(0.01)ES(0.99)PK;DELTES(1)PK;DELTES(1)PK;DELTES(1)PK 215.83 8.586e-06 4670320000.0 9085200.0 6332910.0 5517820.0 4800670.0 4989630.0 7247820.0 6192610.0 6157660.0 9671570.0 5681100.0 True False 9036286.292660603 6543697.081025059 6294681.094248793 5408434.32977621 5625029.804645953 6746795.262933104 5893049.796232511 6617175.857163918 7288141.16589832 5318527.334165587 1.699020372540454 1.230358832413839 1.1835383554038559 1.0169044906534692 1.0576291990663338 1.2685457531810533 1.108022846545558 1.244174456838074 1.3703306776445743 1.0 22.342595397416407 4.755004364708961 3.029723096486794 1.1629784213678453 1.7968408082033929 0.6798777205731241 0.1110084111888827 0.2375171365412888 3.139463570525857 0.027362650682263637 0.3698735645580664 56885.86479092544 -4.755004364708961 0.6338623868355475 DEMVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEMVPR 6 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 109.7 0.068236 323180000.0 262660.0 345060.0 271060.0 305040.0 291960.0 343540.0 302450.0 287450.0 385650.0 330070.0 False True 261245.86774426964 356545.1135068252 309222.89190424373 343658.0327235444 329139.37541750225 319791.88840617455 287819.33802879945 308900.978641524 290611.72494524537 309004.6500128558 0.8454431599440356 1.153850317436943 1.000706273809727 1.1121451819875425 1.0651599430746714 1.0349096312721182 0.9314401515214253 0.9996644989927254 0.9404768663939354 1.0 18.237269022922483 2.34913545478483 7.036134269735644 0.9702128593676613 1.0448257395499958 0.14279278996153733 0.07918125367969586 0.37842751598934543 22.09269086143954 0.02564367363910793 0.02137363486056451 223.42689740998864 -2.34913545478483 0.07461288018233447 DENGELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DENGELR 7 0 O15355 O15355 PPM1G Protein phosphatase 1G 0 164.24 0.0028038 493920000.0 584930.0 611700.0 580210.0 591730.0 558460.0 564400.0 584550.0 587030.0 724910.0 593640.0 False True 581780.8018718328 632060.0647195406 661898.524724274 666642.957328556 629576.5707482472 525384.356454692 556273.0833021483 630837.1594779401 546265.6437963382 555753.3869592267 1.0468326698916108 1.1373031268020186 1.190993235949158 1.199530174662642 1.132834428941477 0.9453552039139209 1.000935120424124 1.1351026809382665 0.9829281415363025 1.0 19.084085310013666 2.8928093099299934 7.832190687925548 1.0297951252762205 1.148960195589711 0.5186066846582291 0.06086015000445094 0.2701565366799708 17.687737948980516 0.019974578362851002 0.02122350450805604 781.2846826984076 -2.8928093099299934 0.11916507031349055 DENKVDGMNAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DENKVDGMNAPK 12 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ; 115.12 0.00089751 380800000.0 776440.0 565940.0 523850.0 499220.0 485890.0 764640.0 709570.0 684480.0 1108060.0 705690.0 False True 772259.733310594 584776.970782046 597603.5266141752 562421.2008138201 547765.2114043366 711782.2365689501 675245.3882793679 735559.3733190127 834993.4602433002 660652.2600283945 1.168935278110458 0.8851509427318277 0.904565930930881 0.8513120060917486 0.8291278854942447 1.0773931758567783 1.022088970452241 1.1133835723008028 1.2638925358514819 1.0 19.333531571068576 2.309067999533481 1.7409901468977222 1.1249326098146044 0.923709215343704 0.3426423154438917 0.11169100388024895 0.38203949357600164 2.342023154050431 0.05502344065383928 0.03693227552141758 203.73610519536186 -2.309067999533481 -0.20122339447090043 DENQSINHQMAQEDAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 DENQSINHQMAQEDAQR 17 0 P20073-2;P20073 P20073-2 ANXA7 Annexin A7 0 ;;; 268.42 5.8102e-28 2933330000.0 631560.0 865842.0 611810.0 766006.0 970050.0 865360.0 597177.0 1158690.0 1230430.0 837047.0 False True 628159.751132913 894661.0275574573 697947.5300521489 862982.2810596362 1093580.117563187 805539.700038327 568289.2670723231 1245157.3315086006 927207.0134172899 783625.9438280084 0.8016066288774925 1.1416939862749351 0.8906641434594151 1.1012681341865387 1.395538427710872 1.0279645618970579 0.7252047632525197 1.5889689989410176 1.1832265390396455 1.0 19.579805636734008 5.890720588679449 0.48143262295797185 1.1894210526692572 1.6446701148179695e-11 0.1258347385813352 0.23309623582254183 26.083496764327727 1.9847035537755584 0.1387377868509977 22.3184493934519 777536.1479433399 -5.890720588679449 -1.1894210526528106 DENWDKEIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DENWDKEIEK 10 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 76.32600000000002 0.033136 799920000.0 286360.0 250800.0 224990.0 254210.0 222080.0 306420.0 288560.0 282690.0 405420.0 298990.0 False True 284818.2695775872 259147.72638819832 256666.63635186283 286392.95993526134 250360.57162871276 285237.906635093 274601.25039375224 303785.7632707338 305509.6733496731 279908.2022217824 1.017541705876537 0.9258311272453005 0.9169671853649206 1.0231674444050083 0.8944381395095458 1.0190409011633308 0.9810403847193258 1.0853049709134006 1.0914638117950028 1.0 18.094594237629565 2.0358542705890663 1.8709649753572275 1.065896669688275 0.9584149237227582 0.40726958744849295 0.049021775481068286 0.2921156488395238 1.9242013799530504 0.026974165862465753 0.014168795091756252 108.60611299093691 -2.0358542705890663 -0.10748174596551685 DEPDWESLIFLAR ddPTM_BT-474_Trastuzumab_2h_R1 5 DEPDWESLIFLAR 13 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;;;; 268.73 1.9113e-24 1222561000.0 510224.0 536234.0 482882.0 487525.0 455991.0 578538.0 543004.0 523780.0 731551.0 556503.0 False True 507477.0106752154 554082.224529702 550867.588314415 549245.6150129361 514058.7509795945 538545.0297919643 516736.82204328035 562867.1233009475 551270.0583311784 520986.50209381164 0.9740694022507254 1.0635251053585473 1.0573548184079877 1.0542415452330394 0.9867026284051986 1.0337024618249917 0.991843013142467 1.0803871521408335 1.058127333655784 1.0 18.990886469561364 1.7292483271834613 24.999998200605265 1.0532071375218217 1.0261472124442177 0.06885748153199212 0.03500872540815235 1.772115651704865 4732.782196332542 0.015875565858559863 0.008803822590821332 53.61031106853584 -1.7292483271834613 -0.02705992507760402 DEPEEAELILHDALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEPEEAELILHDALR 15 0 Q6DKK2;K7EJA1 Q6DKK2 TTC19 Tetratricopeptide repeat protein 19, mitochondrial 0 ; 119.56 0.000203 50974000.0 43799.0 46386.0 45382.0 41783.0 43926.0 60008.0 49875.0 42702.0 63565.0 44376.0 False True 43563.19105052639 47929.929969070894 51771.39113258471 47072.723515892474 49519.715730200034 55859.788203637734 47462.35570899769 45888.64007636235 47900.25747736163 41543.88568779498 1.048606559769267 1.153718030356319 1.246185576420321 1.133084273090078 1.1919856534928854 1.3445970996412733 1.1424630826707063 1.1045822824860074 1.1530037858599747 1.0 15.342348540371875 0.8242014542402044 0.9669916096000876 1.0035597502317133 1.182187386331527 0.31471760124788173 0.07589715776599197 0.9400661162538756 1.7240145573479593 0.07407925434282273 0.02448752976346981 6.6711614963921795 -0.8242014542402044 0.1786276360998138 DEPIHILNVAIK ddPTM_BT-474_Trastuzumab_2h_R1 3 DEPIHILNVAIK 12 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;; 172.11 3.663e-05 904140000.0 1578720.0 1464550.0 1371050.0 1288330.0 1261190.0 1721150.0 1693250.0 1447280.0 2357120.0 1786260.0 False True 1570220.3469322794 1513296.6614108277 1564081.9226197647 1451432.4459045506 1421795.0708412116 1602170.9516512963 1611341.0286568494 1555283.3827389271 1776239.359789802 1672259.3575058756 0.9389813487270394 0.9049413624856996 0.9353106117178771 0.8679469720948778 0.8502240184571466 0.9580875983501064 0.9635712435540597 0.9300491432492777 1.0621793514368545 1.0 20.67336718753841 1.6364940202867335 1.116965862160322 1.0220795576945572 0.9051948595575734 0.5511253927921862 0.039066462145604594 0.36521358295766476 0.863674338867685 0.03481821199356939 0.01306741070564558 43.3006105723085 -1.6364940202867335 -0.11688469813698377 DEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEPPPLSPAPLTPATPSSLDPFFSR 25 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 DEPPPLS(1)PAPLTPATPSSLDPFFSR 78.921 0.016564 87939000.0 11781.0 10413.0 11413.0 7670.4 8965.7 9644.1 12880.0 8059.8 16169.0 9203.5 True False 11717.57240499215 10759.59041020857 13019.851196425663 8641.471853536172 10107.428751132691 8977.426066769476 12256.945193621867 8661.263202835127 12184.366603499731 8616.12475048723 1.3599585363860403 1.2487737494283762 1.5111029115136023 1.0029418217334316 1.1730829164887764 1.0419331575093334 1.422558928586631 1.0052388345868999 1.4141353516046435 1.0 13.072823423077907 3.738937932005858 24.999999949798386 1.1554471014828462 1.3608279283004865 0.2860254419995454 0.1601837891802391 44.08028584804082 2920592.060213768 0.038795011657038525 0.06483579897763674 5481.986125097167 -3.738937932005858 0.20538082681764025 DEPQEPSNKVPEQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEPQEPSNKVPEQQR 15 1 P12270 P12270 TPR Nucleoprotein TPR 0 ; 154.69 1.2272e-08 285170000.0 397440.0 358120.0 342260.0 331232.0 323057.0 439080.0 414930.0 414180.0 526860.0 423490.0 False True 395300.2271997352 370039.8077118883 390447.23302274966 373165.93723801756 364196.394041143 408727.43308314355 394858.25071347255 445088.21476342506 397022.41256230284 396462.50563197 0.9970683774235293 0.9333538542870192 0.9848276381151557 0.9412389114657458 0.918614973339297 1.030935907625421 0.9959535772091733 1.1226489477332657 1.001412256953379 1.0 18.596824907840002 2.504290512868725 2.598599580875453 1.048011496250967 0.95517145954187 0.4042101532799931 0.04243782555827727 0.23110242614223397 3.14023559826507 0.015544841208605099 0.013413416069962191 319.36734866508186 -2.504290512868725 -0.09284003670909702 DEPQTVPDVPSFGES(ph)PPLSPIDMDTQER ddPTM_BT-474_Trastuzumab_2h_R1 1 DEPQTVPDVPSFGESPPLSPIDMDTQER 28 0 P17535;U3KPR5 P17535 JUND Transcription factor jun-D 1 DEPQTVPDVPS(0.001)FGES(0.953)PPLS(0.047)PIDMDTQER 90.974 0.0018811 23288000.0 28324.0 24803.0 19226.0 20604.0 22346.0 26838.0 24453.0 27328.0 27250.0 26865.0 True False 28171.506731092228 25628.55286126988 21932.853684612262 23212.464287424293 25191.63064488119 24982.752229856516 23270.11497046861 29367.35412877221 20534.602631292455 25150.452699716338 1.1201192705135667 1.0190096046087844 0.8720659602624026 0.9229441936719531 1.001637264571596 0.9933321092919448 0.92523642609149 1.1676670189361416 0.8164704976274267 1.0 14.618296747841002 DEPSVAAMVYPFTGDHK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEPSVAAMVYPFTGDHK 17 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ;;; 234.77 3.8372e-20 1340640000.0 1831400.0 1717780.0 1556980.0 1489020.0 1548240.0 2034900.0 2020550.0 1846080.0 2773570.0 1980200.0 False True 1821539.945887667 1774955.2688800602 1776189.2504872354 1677529.7793273416 1745399.1868625628 1894232.1526393543 1922808.277249432 1983843.8638042957 2090060.837433902 1853821.9406654884 0.9825862484040766 0.9574572562469962 0.9581228981730661 0.9049034011999766 0.9415139332292055 1.0217983243629964 1.0372130327463807 1.070137223153229 1.1274334344557428 1.0 20.822071249287948 2.465032693275875 2.02399417159283 1.0676258426195906 0.9473503871571755 0.6864457028148588 0.03512562442204129 0.1776644772241767 1.4773953885005982 0.014516205786358953 0.01171906316023587 291.76466434009063 -2.465032693275875 -0.12027545546241514 DEQIEHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 DEQIEHWK 8 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 ; 129.38 0.0010930999999999998 564470000.0 927000.0 744620.0 627250.0 572030.0 578570.0 866750.0 788890.0 696450.0 978650.0 784610.0 False True 922009.1349993822 769404.2265677046 715561.3478452633 644448.9393484427 652247.4600469391 806833.6126100363 750728.3768475429 748422.6355014428 737474.8207381417 734535.5180615832 1.2552274360163498 1.0474704185825334 0.9741684782426967 0.8773557214076234 0.8879726630077743 1.098426955226407 1.0220450317075098 1.018905984936586 1.004001580051997 1.0 19.486472727631444 4.71428966930895 2.7483548165233604 0.986888456988206 1.29806391176165 0.6374856113185199 0.06103351169094037 0.28211461001876365 3.0058873466082283 0.016579444971645336 0.19353479497473736 51795.218477696966 -4.71428966930895 0.3111754547734439 DEQLESLFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEQLESLFQR 10 0 P05198;G3V4T5;H0YJS4 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 ; 201.61 5.5536e-07 110193000.0 128139.0 125480.0 117913.0 114416.0 115869.0 132841.0 126856.0 123007.0 150400.0 132109.0 False True 127449.11386158131 129656.52594573825 134514.12548183123 128901.05386866331 130624.23034063078 123658.0143440782 120719.49064301998 132186.4069568898 113335.93525674811 123677.69051579462 1.0304939664547266 1.0483420688485454 1.0876183483119999 1.042233674732159 1.0561664742918937 0.9998409076719144 0.9760813784568781 1.0687975042678257 0.9163814005911941 1.0 16.916225759027938 2.7379685792855737 24.558612657757863 1.0010788534052195 1.0540420958164376 0.3826189311389637 0.03774303344720918 50.78769101293698 2106746.555537539 0.011764968979737627 0.011693050425943945 546.9763883395275 -2.7379685792855737 0.05296324241121808 DESANQEEPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DESANQEEPEAR 12 0 P50552;K7EM16 P50552 VASP Vasodilator-stimulated phosphoprotein 0 183.99 0.00026349999999999995 0.0 39792.0 37741.0 34389.0 37553.0 35422.0 44592.0 42409.0 36360.0 46831.0 41722.0 False True 39577.76429330681 38997.18637008372 39230.67228545357 42307.20594960417 39932.781737357065 41509.45999827713 40357.51465188737 39073.3678323389 35290.127553249775 39059.26623999869 1.0132746490966376 0.9984106237548468 1.0043883580506014 1.083154140419551 1.022363848106902 1.0627301532809985 1.033237910920078 1.0003610306515633 0.903502061109148 1.0 15.253377226832058 1.4741197171945124 4.4881899268541785 0.9505822337431163 1.0309499514547082 0.47837112244927305 0.03269294874665218 0.14753755449581543 6.131296961040161 0.020977914943530476 0.008254040029498125 29.793375975474003 -1.4741197171945124 0.0803677177115919 DESETEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DESETEKEK 9 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;; 177.06 4.793100000000001e-05 4337070000.0 6604250.0 4346580.0 3546620.0 3312410.0 3464600.0 3750880.0 5641630.0 5308200.0 10500000.0 5608580.0 False True 6568693.451801155 4491253.287736904 4045953.268226338 3731760.7663709554 3905796.273706938 3491590.494221786 5368722.803780509 5704324.838493431 7912415.692791582 5250635.622653079 1.2510282418878036 0.8553732558321255 0.7705644723794354 0.7107255263097736 0.7438711337834921 0.6649843457347988 1.02249007350995 1.0864065321697391 1.50694435139522 1.0 22.324060650034806 1.7588532250960445 2.3104300672112776 1.2485524376327557 0.8254555875206908 0.40689442139627896 0.19604853108747622 0.2531987662325808 2.732080394249244 0.12424515616435881 0.05484763954891368 57.392246561194646 -1.7588532250960445 -0.4230968501120649 DETAVQDYHGHK ddPTM_BT-474_Trastuzumab_2h_R1 4 DETAVQDYHGHK 12 0 P48147 P48147 PREP Prolyl endopeptidase 0 ;;; 120.57 0.00022834 1953180000.0 3687390.0 3417860.0 2947340.0 2795540.0 2960850.0 3950760.0 3696930.0 1657030.0 4557870.0 3237570.0 False True 3667537.5019475403 3531621.403959998 3362299.8532614764 3149455.077366829 3337896.697167121 3677653.2602886935 3518095.372255936 1780685.992827846 3434644.010828947 3030945.5107768695 1.2100308266536617 1.165188021824516 1.1093237543553451 1.0390998670773148 1.101272419876521 1.2133683192958704 1.1607253775255775 0.5875018163462244 1.1331922657852747 1.0 21.531336485438956 1.7928537400699367 24.999999999943377 0.8623832717071445 1.139433904259282 0.36603818564853097 0.13850358603202562 128.4429378650527 59159.04215223166 0.05935394790049731 0.03419731398968505 62.065997568567475 -1.7928537400699367 0.2770506325521376 DETEFYLGK ddPTM_BT-474_Trastuzumab_2h_R1 8 DETEFYLGK 9 0 C9K025;P18077;F8WBS5;F8WB72 C9K025 RPL35A 60S ribosomal protein L35a 0 ;;;;;;; 230.59 1.9685e-07 3884470000.0 3877400.0 3420480.0 3145500.0 2986450.0 2859570.0 3756240.0 3936400.0 3436230.0 4858140.0 3754720.0 False True 3856524.5092196395 3534328.609076174 3588359.0588238738 3364534.263792381 3223719.2895007124 3496579.9700378617 3745981.2934917016 3692658.9314223886 3660916.4927408104 3515090.55502248 1.0971337576806683 1.0054729896008527 1.020843987560066 0.9571685881562912 0.9171084610877388 0.9947339663957818 1.0656855733458466 1.0505160176161588 1.0414856844896838 1.0 21.745130425506492 2.254171582634988 24.26322788137917 1.0451567558294246 0.994453584854929 0.14937811768860043 0.0460829480332542 273.75784847430606 425484.65640379715 0.016905916063513247 0.01409326366901318 179.54428367757268 -2.254171582634988 -0.050703170974495615 DETEFYLGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DETEFYLGKR 10 1 C9K025;P18077;F8WBS5;F8WB72 C9K025 RPL35A 60S ribosomal protein L35a 0 ; 110.38 0.0030361 547140000.0 517410.0 791630.0 699060.0 886240.0 751800.0 751050.0 876990.0 714830.0 1362730.0 1003200.0 False True 514624.3220496551 817978.9259995589 797481.5716615545 998437.8931317662 847537.2737322863 699131.6812815312 834566.6432728604 768174.24443319 1026903.4511464635 939174.9171172685 0.5479536481119601 0.8709548254443249 0.8491299726246611 1.0631011060180369 0.9024275012941598 0.744410512396846 0.888616835971838 0.8179245744669661 1.0934102182993468 1.0 19.841034352823286 4.803643942438008 2.609960133023808 0.9050398051030349 0.4365643118283925 0.5319763210823002 0.1031927822810001 0.529381620825108 3.9936893584666557 0.02537776862339297 0.5804589870058394 63627.36562504488 -4.803643942438008 -0.46847549327464244 DETGELSSADEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DETGELSSADEKR 13 1 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 123.95 0.00023348 0.0 131700.0 134530.0 89205.0 68604.0 72395.0 90451.0 86772.0 96244.0 156690.0 101490.0 False True 130990.94183324561 139007.74972489759 101764.28861624034 77289.25936587344 81614.07413121681 84198.33526875135 82574.50685877002 103426.21599712936 118075.84903842991 95012.82131003961 1.378665952943388 1.4630420169431304 1.0710584867716937 0.8134613655315864 0.8589795882905015 0.8861786662875831 0.8690880422266202 1.0885500985139227 1.2427359530050428 1.0 16.53583458764903 4.146890429067232 4.354201260283958 0.9623143412004523 1.421601872040418 0.6821175283998895 0.12213464844101897 0.11854952394026178 4.0083383742193925 0.033441534277016786 0.07916373733167135 14024.598243626806 -4.146890429067232 0.45928753083996565 DETNYGIPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 DETNYGIPQR 10 0 P63244;D6RHH4;D6R9L0;D6RAC2;D6R9Z1;D6RFX4;D6REE5;E9PD14;D6RFZ9;D6RAU2;D6RBD0;D6R909;D6RGK8 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ;;; 244.63 4.0932e-12 3116140000.0 2056630.0 2258740.0 1929370.0 2040250.0 2077310.0 2230880.0 2198900.0 2046150.0 2514240.0 2400260.0 False True 2045557.3325930715 2333920.7954628374 2201008.525615332 2298545.4408084573 2341843.11531899 2076664.5165266506 2092530.8063862666 2198844.10313917 1894639.2410899373 2247073.3518340257 0.9103206759688196 1.0386491360230534 0.979500078988923 1.0229062789305123 1.0421747529548222 0.9241640976391402 0.9312249663226952 0.9785368605544221 0.8431586087492705 1.0 21.09961578890205 2.7223075157288665 24.84211752262585 0.9374685082535423 1.0012060159625824 0.26961258030267043 0.051951673839634345 1001.5635567224156 1530841.0997455493 0.01597907440773619 0.015101865961736584 527.6033151426923 -2.7223075157288665 0.06373750770904008 DETVSDCSPHIANIGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DETVSDCSPHIANIGR 16 0 P47756-2;B1AK88;B1AK87;P47756;B1AK85 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ;;; 258.23 1.0642e-26 3135490000.0 1850880.0 1928630.0 1946980.0 1887140.0 1764550.0 2121650.0 2004480.0 1881360.0 2386180.0 2187670.0 False True 1840915.0677320983 1992823.2836685434 2221097.8605464664 2126051.7305071754 1989254.9831927437 1974985.3293268876 1907515.6445427937 2021756.6365525075 1798137.9121738502 2048051.0276414852 0.898861914515908 0.9730340000187684 1.084493418654837 1.0380853317680834 0.9712917092127092 0.9643242783854173 0.9313809171734697 0.9871612617390407 0.8779751519397285 1.0 20.96582023017391 3.030342786850236 8.319290121312122 0.9541091647718583 1.003238934733124 0.1382709516060575 0.0540740290799441 0.4610493851589823 110.06173657204437 0.016177709656269385 0.01924207319663247 1072.3653848824854 -3.030342786850236 0.049129769961265835 DEVCVNPYHYQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEVCVNPYHYQR 12 0 Q15796-2;Q15796;B7Z5N5;K7EJX0;P84022-3;P84022-2;P84022;H0YMP2;H0YL71;H3BP09;H3BVD1 Q15796-2 SMAD2;SMAD3 Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 3 0 ; 165.58 5.421e-05 770340000.0 538720.0 593530.0 559610.0 571810.0 516490.0 622260.0 636860.0 531610.0 713030.0 660930.0 False True 535819.5913774184 613285.2872535386 638398.2237826835 644201.0873710002 582261.9400239277 579244.630842482 606052.6487585419 571281.4376608831 537313.3106124944 618748.8815493591 0.865972622101095 0.9911699326516122 1.031756570103403 1.041134952450998 0.9410310990234563 0.9361546309256226 0.9794807988031824 0.9232848004999756 0.86838671815786 1.0 19.238994486702843 3.0528275423242253 24.999351894886765 0.9388268021358693 0.9871997888029737 0.11524494357050108 0.05496499245636069 190.79817359113542 90289.15107093476 0.01613414631524809 0.01928399201907578 1129.3473635052012 -3.0528275423242253 0.04837298666710432 DEVFHIHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DEVFHIHK 8 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 137.0 0.00044339 388360000.0 443110.0 469020.0 447260.0 395720.0 374440.0 515710.0 487570.0 19225.0 658690.0 240670.0 False True 440724.3449941489 484631.0471714229 510230.32034638955 445818.1114259143 422122.71452024137 480060.18155076023 463984.37640172464 20659.667122571944 496364.675493799 225310.2345520465 1.9560777870138957 2.150949991841021 2.264567880641599 1.978685576854835 1.8735177093019773 2.1306630056339793 2.0593133610827814 0.09169431279341009 2.203027645329352 1.0 17.78155332286202 1.7845284883035597 24.999999999933177 1.0051803517915752 2.063066197428804 0.44592068013149 0.48751685774131037 68.73901664388906 37396.39246979735 0.2080726989115732 0.1162156578757313 60.88754847001993 -1.7845284883035597 1.0578858456372289 DEVLDNLLAFVCDIRPEIHENYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEVLDNLLAFVCDIRPEIHENYR 23 1 O75348 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 0 ; 142.41 1.0381e-07 724470000.0 634470.0 582660.0 513390.0 515410.0 520320.0 647360.0 661830.0 537430.0 751140.0 618660.0 False True 631054.0840162442 602053.4858745915 585670.8495341252 580660.8531538226 586579.6678217382 602609.526921526 629814.7544638786 577535.7556142431 566031.6117603303 579176.589138527 1.0895711184647159 1.0394990011079208 1.0112129193710293 1.0025627141067688 1.0127820751426133 1.0404590555323607 1.0874313055378693 0.9971669546817759 0.977304025016362 1.0 19.143643762948496 4.674229866921223 2.7106661634906257 1.0189873923908332 1.0980639340484035 0.37694734073037517 0.028489807087625968 0.440174962223008 4.731818215203095 0.007437795237541208 0.07257518276333061 47231.29647705217 -4.674229866921223 0.07907654165757028 DEVLYVFPSDFCR ddPTM_BT-474_Trastuzumab_2h_R1 6 DEVLYVFPSDFCR 13 0 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PRF6;Q14108-2 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 ;;;;; 257.92 1.5020999999999998e-23 873271000.0 990681.0 1248879.0 1109651.0 1008397.0 1185543.0 1204299.0 985675.0 986497.0 1308890.0 986367.0 False True 985347.283571007 1290447.1825517013 1265880.2155406042 1136059.9568067275 1336514.8737861065 1121048.6447449126 937994.1346058417 1060114.4154702642 986331.5977274255 923416.2135887255 1.0670673408923537 1.397470786804319 1.3708663513941792 1.2302794125647765 1.447359115118774 1.214023133065984 1.0157869450444899 1.1480353061489796 1.068133289423399 1.0 19.81662153827167 2.440152733914354 5.542338874284463 1.0789104801482488 1.3100807125307754 0.5417029503226743 0.10531647340371189 0.1415990451525993 11.22848050102717 0.03505794838222644 0.02958776006827714 275.51974886376996 -2.440152733914354 0.23117023238252665 DEVQEVVFVPAGTHT(ph)PGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DEVQEVVFVPAGTHTPGSR 19 0 J3KS57;J3KT79;J3QR84;J3QRJ1;J3QL71;Q96FV2-2;Q96FV2 J3KS57 SCRN2 Secernin-2 1 DEVQEVVFVPAGT(0.341)HT(0.658)PGS(0.001)R 103.63 0.0013573 97422000.0 115040.0 98246.0 92381.0 104140.0 99778.0 133490.0 126830.0 90866.0 132480.0 113450.0 True False 114420.63742214559 101516.05871903893 105387.4418099533 117324.11332228516 112484.13686946016 124262.15050165994 120694.74836234961 97646.88232819879 99832.0791410503 106209.52387056833 1.0773105203030915 0.9558093758404467 0.9922598084366064 1.104647766477718 1.0590776869175909 1.1699718252488482 1.1363834801616626 0.9193797201011431 0.9399541161931028 1.0 16.696553613693585 1.69736359810038 8.783270259592966 0.9485290496508756 1.0678716738524794 0.42759320962043434 0.062130980297730974 0.12071723518855938 17.8634547420205 0.03310896511640441 0.017642141177940968 49.81539727022392 -1.69736359810038 0.1193426242016038 DEVQEVVYFSAADHEPESK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEVQEVVYFSAADHEPESK 19 0 Q12765;Q12765-2;C9K052;B8ZZP4;C9J7U9 Q12765 SCRN1 Secernin-1 0 ;;; 299.51 7.547299999999998e-50 2287420000.0 3212650.0 2778410.0 2530790.0 2330960.0 2137190.0 3434490.0 3386610.0 3084500.0 4894300.0 3338690.0 False True 3195353.449358971 2870887.697265686 2887103.233978976 2626059.297001284 2409348.47838242 3197071.7902198313 3222786.7361934558 3314681.052773636 3688165.345259989 3125611.945803684 1.0223129117640206 0.9185041991921037 0.9236921550210607 0.840174449847148 0.7708405650346679 1.022862673183754 1.0310898448287014 1.0604902688652018 1.179981843303218 1.0 21.575707243817753 2.5391544461427675 7.340571645394822 1.065045054561477 0.8946052244196789 0.5567269554745242 0.07392042015017816 0.2144098496792622 22.35552935951388 0.02505342162773317 0.023469828970330626 346.0624245288651 -2.5391544461427675 -0.17043983014179798 DEVVS(ph)PLPSALQGPSGSLSAPPAASVISAPPSSSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 36 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 DEVVS(0.995)PLPS(0.005)ALQGPSGSLSAPPAASVISAPPSSSSR;DEVVS(0.977)PLPS(0.023)ALQGPSGSLSAPPAASVISAPPSSSSR 220.94 2.9845999999999994e-39 1032290000.0 215010.0 243688.0 235896.0 202217.0 206797.0 238644.0 215095.0 223890.0 319780.0 263412.0 True False 213852.41004985647 251799.00776749314 269108.10635521146 227817.651466224 233131.37216815053 222147.10198755027 204690.03310730535 240597.80869038397 240974.5038324663 246600.8206416406 0.8672007233934796 1.0210793585857791 1.091270116843116 0.9238316842314477 0.9453795472438276 0.900836831805899 0.8300460338076496 0.9756569668517844 0.9771845170890552 1.0 17.911818075206174 DEWLRPEDLPIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DEWLRPEDLPIK 12 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ;;; 162.93 5.5964e-05 4015770000.0 4338750.0 3846210.0 3592660.0 3403100.0 3330900.0 4247860.0 4240290.0 3772820.0 5223490.0 4126320.0 False True 4315390.652080444 3974228.7747669523 4098475.3000394837 3833932.1110722963 3755070.371208924 3954215.43658686 4035170.973219164 4054366.98639177 3936230.8806799916 3862974.724879718 1.117115942873484 1.028800097803047 1.0609635299043016 0.9924818007168489 0.9720670308879243 1.0236192877782764 1.0445760742959063 1.0495453051451202 1.0189636642788427 1.0 21.881280807492004 5.585435796901866 1.253039740678311 1.0212093407685552 1.6361636345114512 0.5615953264737688 0.025612709481180967 8.681618348848422 2.38020097151983 0.007810956539896171 11.456548833963282 384977.89799681667 -5.585435796901866 0.614954293742896 DEYLLGRPIDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DEYLLGRPIDK 11 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 0 ;; 136.5 8.9286e-05 658980000.0 618240.0 569690.0 501270.0 470420.0 471350.0 612750.0 599740.0 578180.0 810910.0 633380.0 False True 614911.4645329221 588651.787265123 571844.4588830537 529975.1237667501 531373.628589669 570392.0347583498 570728.2849707131 621326.7275385504 611072.096137298 592957.1461361009 1.0370251350200983 0.992739173650182 0.9643942443553903 0.8937831801509404 0.8961417061119343 0.9619447855130971 0.9625118588919315 1.0478442356033904 1.030550184139343 1.0 19.177568317334618 1.7965429206307835 6.420162818346171 1.0295184834764042 0.9548539196067666 0.36282021693961886 0.04093333958365268 0.23686544479811203 18.787756759385648 0.02073215135896141 0.01198409605254667 62.59547229713128 -1.7965429206307835 -0.0746645638696376 DFAAEVVHPGDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFAAEVVHPGDLK 13 0 P54577;A0A0C4DGZ5 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase 0 ; 134.21 9.8265e-05 399470000.0 1043290.0 948160.0 822600.0 769770.0 814960.0 1001350.0 996130.0 999710.0 1348860.0 1007360.0 False True 1037673.0425604171 979718.9324251758 938414.9298326239 867222.8030737028 918740.3253536363 932129.0314243537 947943.3863138626 1074313.4366245207 1016451.5267979874 943069.4223557138 1.1003145876243032 1.0388619429287764 0.9950645282173785 0.9195747232557365 0.9742022205095937 0.9883991669414625 1.0051681921209725 1.1391668642388697 1.0778119857379862 1.0 19.84700445064137 1.7671752590532328 24.999999996374758 1.0862259820637994 0.9992637533221589 0.243033467632919 0.054070968260209004 24.33787852455968 21275.795170980164 0.025888424230252838 0.014358784123913768 58.502612315338844 -1.7671752590532328 -0.0869622287416405 DFALDSEESR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFALDSEESR 10 0 A5YKK6-3;A5YKK6-2;A5YKK6;A5YKK6-4;H3BNB1;H3BTH2 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 97.277 0.012219 0.0 119470.0 155230.0 136920.0 136650.0 143730.0 151650.0 153530.0 133770.0 172410.0 168120.0 False True 118826.78679436487 160396.7367114835 156197.1458700255 153949.87598895995 162033.16354554615 141166.79244570166 146103.16735844465 143752.5966702964 129921.86567563777 157390.43766522637 0.754980979512317 1.019100900225283 0.992418270049296 0.9781399573741284 1.0294981445454454 0.8969210235374475 0.9282849042532683 0.9133502568692385 0.8254749627927526 1.0 17.263988366285858 DFAVSTVPVSGPSHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFAVSTVPVSGPSHLR 16 0 O95865;A0A140T971;Q5SSV3;Q5SRR8;H0Y7N1 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 ;;; 138.05 8.7115e-06 4743340000.0 2193920.0 2817530.0 2590600.0 2714220.0 2269430.0 2752480.0 2837580.0 2611280.0 3015150.0 2721290.0 False True 2182108.178487429 2911309.7828171477 2955333.9621011387 3057839.9737047506 2558428.458534531 2562207.536240984 2700315.414791735 2806146.973411161 2272106.6834400506 2547614.942386418 0.8565298241041838 1.1427589524537987 1.160039499270953 1.200275568662033 1.0042445645800708 1.005727943266378 1.0599385997721769 1.1014800261701123 0.8918563969921248 1.0 21.280715808186297 DFAYGETDPLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 DFAYGETDPLIR 12 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 ;; 141.88 0.00013829 493738000.0 849810.0 966300.0 822690.0 865890.0 911490.0 1022530.0 978790.0 876330.0 1124440.0 1010680.0 False True 845234.7173827671 998462.711359316 938517.6010503308 975511.5852182992 1027562.8486755006 951844.9078767123 931442.1883590949 941726.1945135733 847336.8287240536 946177.5371133196 0.8933151382577549 1.0552593696163117 0.9919043353255264 1.0310026891934831 1.0860148422150016 1.0059897540800675 0.9844264441119787 0.9952954467579871 0.8955368263224491 1.0 19.851751385149107 1.4585992303829263 4.185272092073873 0.9462017917218419 1.0109835048075135 0.1500102883128761 0.05351942797397789 0.31957077369296827 10.876718492151168 0.0350753349103927 0.013203325845539984 28.747443585720767 -1.4585992303829263 0.0647817130856716 DFCIEASER ddPTM_BT-474_Trastuzumab_2h_R1 2 DFCIEASER 9 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 172.94 0.00012984 1005060000.0 601100.0 690310.0 643940.0 609150.0 525490.0 568230.0 671360.0 574420.0 801790.0 621440.0 False True 597863.7443884882 713286.5510487935 734601.1547731834 686268.3275424426 592408.0366767482 528949.5975695418 638883.7519557442 617286.1372456574 604199.5979355582 581779.1671584488 1.0276472210385263 1.2260434737336139 1.2626804056273695 1.1796027879347146 1.0182695945786668 0.9091930880802427 1.0981550870516867 1.0610316974061365 1.038537699599345 1.0 19.150112110553078 3.241622619519109 23.007861738618587 1.0265711731114089 1.184046206450939 0.5102723733757146 0.07309927273032785 24.118089258283515 181216.8670284548 0.0211782196338774 0.027450654102148805 1744.3057785142623 -3.241622619519109 0.15747503333953006 DFDCCCLSLQPCHDPVVTPDGYLYER ddPTM_BT-474_Trastuzumab_2h_R1 2 DFDCCCLSLQPCHDPVVTPDGYLYER 26 0 Q9Y314;A0A075B6F9;M0R3B2;A0A075B797;M0R1K2;M0QX85 Q9Y314 NOSIP Nitric oxide synthase-interacting protein 0 ; 138.11 1.0016e-05 572320000.0 161474.0 179765.0 158521.0 181581.0 172180.0 170517.0 152725.0 203411.0 218963.0 195029.0 False True 160604.6419254479 185748.36935476295 180839.37891076744 204569.13598208062 194106.1024091846 158729.56114384255 145337.10828384326 218590.56172012916 165002.5026038785 182582.08224727277 0.8796298078578128 1.017341718686295 0.9904552335308282 1.1204228446963955 1.0631169281238928 0.8693600116186291 0.7960096987338097 1.1972180349224506 0.9037168410666603 1.0 17.478185667352847 4.743045051077638 22.53345389944242 1.0030393730577825 0.8796296068846869 0.083600475579931 0.1122773917080983 296.50465553494973 1489642.8835856677 0.02724580871812516 0.2099172805959591 55340.75133799784 -4.743045051077638 -0.12340976617309551 DFDDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFDDEK 6 0 J3QRS9;O43670-2;O43670;O43670-4;X6R4W8;O43670-3 J3QRS9 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 118.69 0.050377 604860000.0 1774500.0 1142200.0 986220.0 905730.0 909390.0 1200500.0 1331700.0 1286300.0 1861500.0 1246700.0 False True 1764946.2891654824 1180217.4365255197 1125071.2036220906 1020395.3251334118 1025195.4261231767 1117512.2606730286 1267280.5834119744 1382290.237699052 1402758.2678220528 1167134.5386464316 1.5122046608374342 1.0112094171202068 0.9639601660035497 0.8742739515847088 0.8783866745235156 0.9574836693369114 1.0858050562719923 1.184345242067932 1.2018822349725702 1.0 20.15453944318047 -0.19112212120047478 7.996078356657497 1.0000011266981599 1.0634316051761548 0.011693990083765482 0.18153662021832406 12220624.244033841 1528327.0139402098 0.179738721332547 0.043593043099295514 0.6439881541540974 0.19112212120047478 0.06343047847799488 DFDFESANAQFNKEEIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFDFESANAQFNKEEIDR 18 1 Q8ND56-2;Q8ND56;Q8ND56-3;A0A140TA76;K7EMZ9 Q8ND56-2 LSM14A Protein LSM14 homolog A 0 ;;; 329.1 6.9289e-75 3051430000.0 1641320.0 1561100.0 1443070.0 1447490.0 1432720.0 1784300.0 1900030.0 1725100.0 2418630.0 1896320.0 False True 1632483.3154877932 1613060.2697951216 1646241.7126107041 1630742.0855855057 1615168.3996032479 1660955.5407904095 1808118.2900805422 1853835.7218803044 1822591.044481574 1775295.2340787663 0.919555961256731 0.9086152200662942 0.9273058818664432 0.9185751498013388 0.9098027013187971 0.9355939839788452 1.018488787313626 1.0442408036105015 1.0266410957991168 1.0 20.759627536095167 2.261556241845824 3.5929962543005347 1.0295568754412063 0.9174361043145195 0.9494822821478646 0.011619791522716963 0.040813468478298164 1.1183461993158668 0.004257397102995545 0.003271573812122344 182.6233233953191 -2.261556241845824 -0.11212077112668684 DFDPAVTEYIQR ddPTM_BT-474_Trastuzumab_2h_R1 6 DFDPAVTEYIQR 12 0 P09467;A0A3B3IUC7;Q5VZC3 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ;;;;; 265.55 2.8855e-21 5124166000.0 2916390.0 3171840.0 3023360.0 2816340.0 2369770.0 2798260.0 3132120.0 2652310.0 3638950.0 3030010.0 False True 2900688.4802813884 3277412.7769822306 3449022.8084837855 3172888.3552341573 2671546.1627727565 2604822.87259551 2980607.3897396685 2850238.8403572817 2742179.531931801 2836632.1676779264 1.0225818184441935 1.1553887085984533 1.2158865177458533 1.1185406382215186 0.9418021106908938 0.9182801007040063 1.050755689688029 1.0047967702102503 0.9667025436634441 1.0 21.435747654630838 3.306768773597373 6.4923781255895685 0.984426063478443 1.1381543869351283 0.6231826086773634 0.056094987603321406 0.1401787613159172 10.392944951241867 0.0162541965765613 0.02196985836846863 2026.6034311366095 -3.306768773597373 0.1537283234566853 DFDRVRVNGWAT(ph)LFLRT(ph)S(ph)IPT(ph)INMENK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFDRVRVNGWATLFLRTSIPTINMENK 27 3 P26006;P26006-1 P26006 ITGA3 Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain 4 DFDRVRVNGWAT(1)LFLRT(1)S(1)IPT(1)INMENK;DFDRVRVNGWAT(1)LFLRT(1)S(1)IPT(1)INMENK 79.458 0.0043791 664480000.0 1460780.0 653860.0 376860.0 314750.0 316040.0 579690.0 551710.0 472990.0 1163730.0 591090.0 True False 1452915.322787914 675623.3348332826 429918.6122741584 354597.3177279554 356285.82068416034 539617.3947434804 525021.6795631301 508286.9155945542 876944.3346830816 553366.1301423905 2.6255949608156435 1.220933660430994 0.7769152986713029 0.6408005449063381 0.6438518754165202 0.9751543604676847 0.9487781253038258 0.9185363684325302 1.5847452290898776 1.0 19.07787481811185 4.727320478264526 3.0700371230376966 0.9163476335038995 2.871166582588524 0.8007419989856605 0.2513459580261763 0.14558925946411336 2.1020561909261457 0.06259542204031483 0.6824425526607323 53372.86037398594 -4.727320478264526 1.9548189490846246 DFDS(ph)S(ph)EDEKHSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFDSSEDEKHSK 12 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 2 DFDS(1)S(1)EDEKHSK;DFDS(1)S(1)EDEKHSK;DFDS(1)S(1)EDEKHSK;DFDS(1)S(1)EDEKHSK 177.58 1.314e-05 3150480000.0 5113380.0 3270640.0 2015530.0 2352630.0 2547110.0 4509650.0 3983640.0 3702170.0 7434900.0 3769080.0 True False 5085850.130229926 3379501.2752563725 2299299.1046991833 2650472.7167794146 2871469.3605962237 4197908.510074242 3790936.114217375 3978444.724638345 5602668.517555831 3528534.087528268 1.4413492980572438 0.9577635333611606 0.6516301239163708 0.7511540631412934 0.813785353738125 1.1897032608844287 1.0743657338089991 1.127506388191148 1.5878175974999553 1.0 21.75063751658899 2.727466249943623 23.65047541486958 1.1871385677143516 0.9004219374539819 0.23389865121712716 0.2448304444010549 530.0005458163647 1129828.1600398412 0.08109630847274937 0.07720194917726553 533.907780719364 -2.727466249943623 -0.28671663026036964 DFDTALK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFDTALK 7 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 148.98 0.0047622 2142030000.0 3197040.0 3013710.0 2662650.0 2533700.0 2471810.0 3258310.0 3204280.0 3024520.0 4403200.0 3286810.0 False True 3179827.4918645336 3114019.515523835 3037527.9758313126 2854466.160213883 2786580.351934296 3033070.698936724 3049276.7348617017 3250225.0406013634 3318090.3598571355 3077042.9718203843 1.0334036674123344 1.01201690845467 0.987158126697953 0.9276653548082157 0.9056033267828398 0.9857095681515146 0.9909763246035346 1.0562819792791274 1.078337348631224 1.0 21.5531131608017 1.8578715142081672 3.2831052932901112 1.0506781853697753 0.9728604603062098 0.38038179471054256 0.03944126739787128 0.2574208209999659 4.7653072291405785 0.022443927915221915 0.01185781677303688 72.08941714731799 -1.8578715142081672 -0.07781772506356555 DFDWNLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFDWNLK 7 0 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739;Q9Y5A9;Q9Y5A9-2 A0A024R7W5;Q9Y5A9 YTHDF3;YTHDF2 YTH domain-containing family protein 3;YTH domain-containing family protein 2 0 ;;; 130.0 0.0083885 1591440000.0 2925050.0 2646330.0 2499120.0 2280500.0 2135360.0 2934290.0 2821780.0 2489420.0 3530250.0 2963840.0 False True 2909301.855803604 2734411.4943097313 2850974.3732595504 2569211.066175065 2407285.4387296834 2731449.438875684 2685279.7211535946 2675193.1614186224 2660267.190426425 2774685.193728913 1.048516012691796 0.9854853085639392 1.0274947153295297 0.9259468684886337 0.8675886706608762 0.9844177800959379 0.9677781563193603 0.9641429476269404 0.9587636090893896 1.0 21.403892666837578 3.7462177389320988 24.924877023203372 0.950767120958618 1.0169973460183948 0.41171059936157317 0.03704025589738957 594.532377890277 1935269.594861182 0.009823015843027296 0.0172782863323907 5574.651709669672 -3.7462177389320988 0.06623022505977672 DFEADDTCLAHCWVVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFEADDTCLAHCWVVVR 17 0 Q9NWX6;E5RIQ8 Q9NWX6 THG1L Probable tRNA(His) guanylyltransferase 0 125.73 4.5963e-05 74496000.0 43716.0 49226.0 42848.0 44096.0 45658.0 49263.0 42738.0 43683.0 57062.0 46227.0 False True 43480.6379133042 50864.45765225459 48880.62595850755 49678.54907873526 51472.27566383181 45857.56476262839 40670.59966498535 46942.84727777942 42999.83469162606 43276.75328307415 1.0047111812870166 1.175329797028652 1.1294892118819164 1.1479268963128273 1.1893747048710095 1.0596350530889667 0.9397793637373419 1.0847127780294719 0.9936012161162656 1.0 15.401304648628537 2.4857783307787993 23.99397398172402 1.0147103747989124 1.132112564923203 0.5115601285784357 0.05728154503588101 199.9029037731374 554054.6869374678 0.018637577198747313 0.016353414944929156 306.04009688469995 -2.4857783307787993 0.11740219012429054 DFEEYPEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFEEYPEHR 9 0 O14980 O14980 XPO1 Exportin-1 0 ; 134.25 0.00025426 709310000.0 920620.0 967690.0 814330.0 804100.0 789940.0 952000.0 947070.0 819050.0 1026820.0 897340.0 False True 915663.4842104985 999898.9766690423 928980.5857167526 905898.9775537691 890534.1766587951 886190.4807669494 901256.6059412635 880171.670051627 773773.9696830724 840070.9929485751 1.0899834560369719 1.190255329682894 1.105835808538172 1.0783600257094268 1.0600701418496772 1.0548995123096667 1.0728338598835943 1.0477348669810655 0.921081642120738 1.0 19.680151727146075 2.6511540557542514 0.4249766150417498 0.9779815479584523 1.151958982505695 0.6150273017307568 0.04092160556777979 0.8925256689508579 0.3334680723588409 0.04131098881017099 0.059915081610429646 447.872148113658 -2.6511540557542514 0.1739774345472428 DFEPILEQQIHQDDFGESK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFEPILEQQIHQDDFGESK 19 0 O95163 O95163 IKBKAP Elongator complex protein 1 0 ; 212.79 3.939e-25 92884000.0 299320.0 237606.0 228468.0 218583.0 250511.0 305220.0 303310.0 274310.0 419660.0 306390.0 False True 297708.4943775783 245514.57207413984 260634.30852054476 246255.58538818036 282412.0909549734 284120.8598105973 288637.7365432804 294780.40511795634 316240.4161558968 286835.92788632365 1.037905176563389 0.8559407947369831 0.9086529377304404 0.8585241995409105 0.9845771170858922 0.9905344212082026 1.0062816700482196 1.027696939118384 1.1025132677285339 1.0 18.129866215830535 2.6683480367385304 1.3826192412507816 1.0385180061400876 0.9126821336823641 0.46367133952359596 0.05530180971470392 0.3489874601898798 1.3551749837038911 0.02432980147355109 0.02169899787257471 465.95935640833443 -2.6683480367385304 -0.12583587245772354 DFEPQPGNMSHPRPWLGLDHFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFEPQPGNMSHPRPWLGLDHFNK 23 1 Q93009;A0A669KBL1;Q93009-3 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 0 87.32600000000002 0.0041978 411880000.0 735680.0 652950.0 616870.0 497090.0 447660.0 613160.0 681890.0 467900.0 970990.0 633300.0 False True 731719.1806217325 674683.0460333892 703719.9340698404 560021.5430322137 504666.8475112996 570773.6924233862 648904.3756272375 502817.073948057 731702.5250994009 592882.2518045914 1.2341728537067096 1.1379713998518521 1.1869472090417374 0.9445746458552983 0.8512092341695416 0.9627100333769276 1.0944911466857512 0.8480892663216051 1.2341447612443683 1.0 19.17738608408956 3.743147480581277 24.30970503790442 0.9762129366243109 1.18152460180943 0.39840068447905563 0.10909052482643188 244.70217689132386 1296877.2845170572 0.027285682274276173 0.04716046495905469 5535.380514007861 -3.743147480581277 0.20531166518511923 DFEPYDFTLDD ddPTM_BT-474_Trastuzumab_2h_R1 1 DFEPYDFTLDD 11 0 Q69YN2;Q69YN2-2;Q69YN2-3 Q69YN2 CWF19L1 CWF19-like protein 1 0 107.47 0.0051031 12784000.0 41186.0 50919.0 46139.0 43917.0 44060.0 56085.0 46909.0 42318.0 47976.0 46050.0 False True 40964.2591521948 52613.808133814506 52634.970152622736 49476.88769708856 49670.77983591987 52207.97595988906 44639.832460218044 45475.98404644991 36152.95764546372 43111.04957461147 0.9502032438644005 1.2204251265735666 1.2209159988445282 1.1476614043334727 1.152158908818854 1.2110114802362608 1.0354615093042618 1.0548568057417738 0.8386007300261732 1.0 15.395770066112583 1.6924697056511475 1.7430916256111653 0.9299875020311247 1.1538230542933843 0.4773243421695037 0.08871091441602459 0.2673655819690745 1.6399776404376216 0.06436454378920733 0.02476546948758766 49.25719826368341 -1.6924697056511475 0.2238355522622596 DFEQDILEDMYHAIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFEQDILEDMYHAIK 15 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 0 ;;; 212.7 7.4225e-10 348871000.0 678983.0 617195.0 585070.0 509528.0 526927.0 683633.0 684386.0 625429.0 899473.0 685865.0 False True 675327.4309701024 637737.9624727432 667442.7704803962 574034.1925569174 594028.0301089816 636375.0598089832 651279.6345715907 672101.6878441122 677809.9314706974 642092.508501431 1.0517603336413905 0.9932181952428464 1.0394807004338515 0.8940054352863364 0.9251439975454219 0.9910955997512079 1.0143081035030317 1.0467365355386549 1.0556265997443681 1.0 19.292421640852393 2.1261501020024585 2.9009667503278376 1.0378917914295045 0.9784831505441932 0.20365717732038746 0.046086772451478235 0.4029501552209601 6.756903056502832 0.021739395191051173 0.014385060759830856 133.70575540492237 -2.1261501020024585 -0.05940864088531128 DFEQPLAISR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFEQPLAISR 10 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 0 ; 137.46 0.00021083 201470000.0 206730.0 225240.0 214910.0 197370.0 212070.0 252700.0 235680.0 176511.0 276060.0 230180.0 False True 205616.98864986197 232736.97723954456 245167.459968793 222357.0217631978 239075.85746263084 235231.44379181528 224279.25801496883 189683.14712469667 208028.71201448032 215489.71533298751 0.9541846966205806 1.0800375177066133 1.1377223251232462 1.0318683720919046 1.1094536789990028 1.0916133209806402 1.0407886876104466 0.8802422279484986 0.9653765224619746 1.0 17.717259489959222 1.9071566791399255 5.989413945333208 0.939057381024497 1.0711336035118038 0.4871223922337736 0.054343254500263685 0.1711423408682535 8.91188304526479 0.023385737413220677 0.014210979054065728 80.75263065892466 -1.9071566791399255 0.13207622248730677 DFESHITSYK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFESHITSYK 10 0 Q99613-2;Q99613;B5ME19;H3BPE3 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 ;;; 185.61 1.4306e-06 3916000000.0 9452700.0 10049800.0 9422000.0 9223900.0 9430100.0 11482600.0 11124400.0 10641900.0 13796300.0 11659200.0 False True 9401807.713493707 10384301.51776761 10748535.702507894 10391644.794252235 10630967.338418242 10688834.889132965 10586270.272665143 11436052.616473254 10396386.725948617 10915099.87405668 0.8613579190274008 0.9513702703215124 0.9847400231357772 0.9520430334266929 0.9739688560877237 0.979270461330225 0.9698738806620443 1.0477277119245412 0.9524774712010693 1.0 23.37982199537827 6.057821382701513 0.7976309488806823 0.9903672942879637 4.605786971750354e-23 0.6579924512150781 0.026131711690145085 10.70367349657392 1.002008912005682 0.009227253799298474 15.107630483699875 1142408.386688064 -6.057821382701513 -0.9903672942879637 DFFHGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFFHGLR 7 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 ;;; 134.66 0.0031526 2374970000.0 2741940.0 3540970.0 3222790.0 3115180.0 2997410.0 3141180.0 3066450.0 2795430.0 4012930.0 3156760.0 False True 2727177.699698173 3658829.0458884337 3676530.8190071527 3509561.4685933944 3379112.3964590253 2924037.6201423625 2918114.098523433 3004039.181505916 3023997.1720070625 2955292.874161791 0.9228113137421893 1.2380597124155373 1.244049566508675 1.187551155852467 1.1434103286353445 0.9894239740863946 0.9874195968990372 1.0164945774986687 1.0232478812661698 1.0 21.494869680154572 2.7794126165060145 5.440081098898628 1.0038442244239543 1.1611036872675031 0.41583786537557466 0.0845566267068808 0.18700686595116744 14.504418201291474 0.026105158247683086 0.027274092770147532 601.7451748166525 -2.7794126165060145 0.15725946284354886 DFFLANASR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFFLANASR 9 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;; 166.77 0.00014073 1354390000.0 1383350.0 1960710.0 2068690.0 1811720.0 1429370.0 1556540.0 1864560.0 1334340.0 2027510.0 1690220.0 False True 1375902.197304635 2025971.0470757766 2359943.570624183 2041083.5662401614 1611391.7969602512 1448940.053501036 1774364.1094891 1433915.2264412283 1527857.3277420816 1582348.712529856 0.8695315933899584 1.2803568714235296 1.4914181380734401 1.2899075596155294 1.0183544146751073 0.9156894697278665 1.1213483446719215 0.9061942004861163 0.9655629733469725 1.0 20.593636140310156 3.1872307472988033 5.783140410270251 0.9815932908870261 1.2546884409946328 0.37538080509311966 0.153989865334393 0.19427855241975978 14.169975647453636 0.0457113520311787 0.055709445451216984 1538.9721025283993 -3.1872307472988033 0.27309515010760677 DFFLSDR ddPTM_BT-474_Trastuzumab_2h_R1 5 DFFLSDR 7 0 Q9UPT9-2;Q9UPT9;J3QS30;K7ESK0;K7ERX6;A6NNY8 Q9UPT9-2 USP22;USP27X Ubiquitin carboxyl-terminal hydrolase 22;Ubiquitin carboxyl-terminal hydrolase 27 0 ;;;; 166.17 0.0026368000000000003 1110152000.0 1331043.0 1614120.0 1418295.0 1518840.0 1428513.0 1591440.0 1531510.0 1425194.0 1807860.0 1587460.0 False True 1323876.81238078 1667845.0084438538 1617978.607958864 1711124.9882698276 1610425.6630900907 1481427.4986468025 1457425.0103636526 1531549.2132684947 1362337.1270828776 1486146.9437071176 0.8908115163083652 1.1222611704085599 1.0887070183806313 1.1513834453015217 1.0836247854959524 0.9968243752205669 0.9806735575744485 1.0305503232729623 0.9166907302481121 1.0 20.503145339626414 2.7147167281481264 6.856641919001955 0.9898215715437159 1.076312612461969 0.24925944727364613 0.07042648298138994 0.26178387982539797 51.9575715128188 0.022311483141908863 0.021504266767091006 518.461758025188 -2.7147167281481264 0.08649104091825321 DFFQSYGNVVELR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFFQSYGNVVELR 13 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ;;; 304.51 6.9321e-41 533955000.0 316551.0 363152.0 308623.0 314828.0 328851.0 343010.0 342938.0 316274.0 405976.0 342924.0 False True 314846.72458812216 375239.2947899802 352074.4358007953 354685.1925199581 370728.2255974139 319298.52605868824 326348.7787896195 339875.97188683046 305928.6545996913 321038.2967279931 0.9807139141872632 1.1688303190441798 1.0966742578350341 1.104806486126087 1.1547788203957539 0.9945808002128202 1.0165415843397831 1.0586773458208258 0.9529350788292282 1.0 18.292385881454187 2.726234168630971 24.98582646825597 1.0133172282702116 1.1048734705157894 0.44701768788381446 0.05320356736451284 714.7111612848863 1448723.2442700302 0.016418869042060642 0.015580000774844342 532.3952457849166 -2.726234168630971 0.09155624224557779 DFGEEHPFYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFGEEHPFYDR 11 0 Q68CQ4 Q68CQ4 DIEXF Digestive organ expansion factor homolog 0 ; 79.492 0.026997000000000004 563250000.0 396540.0 457180.0 418590.0 437280.0 420830.0 458630.0 431940.0 408110.0 551500.0 483420.0 False True 394405.07269973593 472396.95992885367 477523.8335504964 492639.60316467204 474420.20604516915 426925.9875988928 411045.41202896193 438565.240540589 415590.2147213871 452567.7217233157 0.871482993081998 1.0438149634932667 1.0551433755199138 1.0885433925529822 1.048285556554149 0.9433416638137986 0.9082517207894488 0.9690599207353825 0.918293980708294 1.0 18.787774166044876 2.7301518237873026 23.56805328659455 0.94454828086026 1.0282951435100445 0.2735547916463307 0.05938443468100796 349.2544370162799 978882.4858296353 0.019147275690983515 0.018350741111530764 537.2195686260421 -2.7301518237873026 0.08374686264978448 DFGNHQVTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFGNHQVTGK 10 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 0 ; 123.79 0.00045266 380770000.0 1083720.0 1090410.0 974710.0 982610.0 1022670.0 1124470.0 1099750.0 1036100.0 1342240.0 1139920.0 False True 1077885.3719326116 1126703.6376832344 1111940.6956688042 1107008.325250728 1152900.9626600128 1046738.0356176608 1046550.8910470211 1113419.043209195 1011462.9370945307 1067169.3296653868 1.0100415575760453 1.0557871242762522 1.0419533852396747 1.0373314660362596 1.080335548081678 0.9808546839945894 0.9806793185999539 1.0433386832418712 0.9477998561031331 1.0 20.02535767865095 2.723656681237004 24.92866075383774 0.9965212941845384 1.0450788469318182 0.48439803101373224 0.02780155478151763 752.3471034103064 1258391.04264354 0.008912944472173114 0.008437736701431255 529.2448994491447 -2.723656681237004 0.0485575527472798 DFGNSPLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFGNSPLHR 9 0 Q9UKA9;Q9UKA9-2;Q9UKA9-4;Q9UKA9-3 Q9UKA9 PTBP2 Polypyrimidine tract-binding protein 2 0 ; 117.7 0.0011094000000000002 533340000.0 322823.0 477330.0 480860.0 511090.0 470500.0 470420.0 479510.0 419800.0 498910.0 489090.0 False True 321084.9568370075 493217.6404979222 548560.9082899534 575793.9415967611 530415.3861280142 437900.9726495673 456314.26939391444 451127.6077012063 375960.3155514905 457875.8574689846 0.7012489337434809 1.0771863867736935 1.198055978147115 1.2575328709829694 1.1584261923308399 0.9563748896265614 0.9965894946204366 0.9852618353693491 0.8210966125833729 1.0 18.804596972123512 2.720072040619155 22.933785397852137 0.9575559220098964 1.095007010175236 0.14963164526909145 0.14803175940345042 538.4840025022589 667949.0910371613 0.04986626065772872 0.0471244632244339 524.8945223513335 -2.720072040619155 0.13745108816533969 DFHKDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFHKDEVR 8 1 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ; 136.33 0.00047815 550900000.0 380490.0 398400.0 353470.0 337160.0 312610.0 411760.0 370250.0 144042.0 485940.0 330620.0 False True 378441.48411641305 411660.50316211407 403235.50358368363 379844.4214302062 352419.030515363 383296.0003787803 352339.5930076475 154791.14547045546 366186.5982623946 309519.54854197695 1.2226739341637702 1.3299983962282265 1.3027787921091418 1.2272065632671723 1.1386002343808925 1.2383579718448634 1.138343586592119 0.5001013545012416 1.1830806809694363 1.0 18.239671004050642 1.9759589174389458 19.85142104000283 0.8339417649093815 1.239755993461074 0.45039477165528985 0.16844050331392546 39.85854510600321 32911.47561177631 0.0659846286164229 0.04302765133169267 94.61476552611236 -1.9759589174389458 0.40581422855169247 DFIDNLDRPPGSSYFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFIDNLDRPPGSSYFR 16 1 Q3YEC7;G3V154;F2Z2T0;Q3YEC7-4;Q3YEC7-6;Q3YEC7-3 Q3YEC7 RABL6 Rab-like protein 6 0 175.8 3.0936e-09 230060000.0 181660.0 198530.0 225160.0 171490.0 174350.0 195370.0 218720.0 183710.0 288080.0 201170.0 False True 180681.96274432357 205137.95103608092 256860.57087419604 193200.61641673426 196552.43904658678 181864.53175151136 208139.67800846082 197419.37306047813 217086.54407422835 188331.15836969798 0.9593843329399648 1.0892406376718125 1.3638771889777972 1.0258558280487897 1.0436533218828838 0.9656635329269706 1.105179195042587 1.0482565644976272 1.1526852272000736 1.0 17.5229121802132 DFIEDYVDILR ddPTM_BT-474_Trastuzumab_2h_R1 6 DFIEDYVDILR 11 0 Q9NRL2;Q9NRL2-2;A0A087WWN7 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 0 ;;;;; 190.88 4.8289e-06 296372000.0 474066.0 658749.0 622285.0 644442.0 629692.0 689456.0 689207.0 632392.0 786470.0 723683.0 False True 471513.68132968363 680675.06224282 709897.3190018171 726028.2911238729 709879.5437231049 641795.5295248515 655867.4243835828 679584.302261509 592655.0066580762 677496.9313638128 0.6959643055216777 1.004690989334239 1.0478236669984347 1.0716333277884604 1.0477974303058544 0.9473039652488259 0.9680743838401018 1.0030810042098557 0.8747714996510045 1.0 19.369854886414412 4.7392028219353834 24.877533739704283 0.9991147483748282 0.69596420743741 0.7353293722003258 0.05399835363749601 25.85935167484244 1001500.9228297279 0.013352392995355823 0.07975760075794258 54853.30781584284 -4.7392028219353834 -0.3031505409374181 DFIHTASISFLTPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFIHTASISFLTPLR 15 0 B7ZC38;Q9NR46;Q9NR46-2;B7ZC39 B7ZC38 SH3GLB2 Endophilin-B2 0 ; 229.32 4.7771e-13 416440000.0 247423.0 318680.0 305160.0 305750.0 263420.0 337070.0 351310.0 255144.0 359120.0 339650.0 False True 246090.9020592794 329287.0711538723 348123.8755017312 344457.9186507459 296964.97558733553 313769.14427743235 334315.7931654732 274184.14087498025 270619.6879614582 317973.2462110049 0.7739358735104875 1.0355810593428343 1.094821277104296 1.0832921409437255 0.9339306973966972 0.9867784413196111 1.0513959811059812 0.8622868248891402 0.851076910357033 1.0 18.27854585886961 1.7183773759535852 9.557925381232417 0.8938793699151145 1.0004711439178835 0.15357960623031197 0.09469312476938811 0.1685462736527594 41.81295798828111 0.045001859177842586 0.02424190477609194 52.285031734829474 -1.7183773759535852 0.10659177400276898 DFIIFEAAPQETR ddPTM_BT-474_Trastuzumab_2h_R1 6 DFIIFEAAPQETR 13 0 P60510;H3BTA2 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit;Serine/threonine-protein phosphatase 0 ;;;;; 148.18 9.1424e-05 250810000.0 345692.0 418758.0 364688.0 383520.0 347876.0 400335.0 419218.0 339967.0 446471.0 416938.0 False True 343830.8326819922 432696.10688544315 416032.9004750789 432073.59267680824 392175.9465774051 372660.7837372236 398938.8237717211 365337.0638574471 336444.20445489034 390328.65988141904 0.8808751906315238 1.1085430083891232 1.0658528138862997 1.1069481621156674 1.0047326442709774 0.9547358983335661 1.0220587540072457 0.9359729412860324 0.86195106594812 1.0 18.574329870984595 2.3468165987245495 1.1394866211811727 0.9337078844220449 1.0437965155397793 0.2303009416357813 0.07187715684121183 0.650224353106075 1.6614434530460844 0.044729767627642504 0.028012720094422495 222.2371191678007 -2.3468165987245495 0.11008863111773437 DFIS(ph)RFEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFISRFEEK 9 1 F6XZQ7 F6XZQ7 GSTM2 1 DFIS(1)RFEEK 66.435 0.038601 116190000.0 86619.0 231660.0 226590.0 278880.0 245510.0 156790.0 159000.0 121780.0 56644.0 163310.0 True False 86152.65292827555 239370.66305857286 258491.9024444133 314186.1794057897 276774.2432482221 145951.47634396024 151308.5625610154 130867.84198631 42684.84519071302 152887.41598327455 0.5635038853537848 1.5656662225539826 1.6907336734155516 2.0550166106552603 1.8103140894113903 0.954633678679787 0.9896730976051562 0.8559752360562269 0.27919135735398015 1.0 17.222110139175687 2.6044796857578936 4.498557907637904 0.8052033662310148 1.5737081304204517 0.4381606680010719 0.40975217800174124 0.22546605836397143 7.251090446342362 0.14140588809452376 0.13215887893605038 402.2348409149364 -2.6044796857578936 0.7685047641894368 DFKPGDLIFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFKPGDLIFAK 11 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 ; 113.65 0.00079391 476890000.0 876580.0 816160.0 706620.0 626020.0 614420.0 929720.0 863830.0 729200.0 1395410.0 903770.0 False True 871860.5906771938 843325.3922208619 806105.953948856 705274.0678127233 692662.7450473418 865450.6447254715 822043.2427489427 783616.6068025716 1051529.903036029 846090.6248435754 1.0304576898466198 0.9967317536189166 0.9527418579988264 0.8335679974507623 0.8186625932362751 1.0228817331305087 0.9715782430527716 0.9261615526675361 1.2428100160434175 1.0 19.690452673255034 1.2620838939663475 24.99176775079505 1.1214050593509968 0.9415482704306573 0.40097213643517426 0.0866418474107937 190.54574697461982 202441.733373257 0.0579840258782964 0.021147576296294896 18.28453389849752 -1.2620838939663475 -0.17985678892033952 DFLDEYIFLAVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFLDEYIFLAVGR 13 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 218.52 5.584e-11 338630000.0 351880.0 383770.0 405310.0 353990.0 319010.0 408680.0 456670.0 365370.0 527380.0 422080.0 False True 349985.5171775429 396543.55245613575 462374.12498232553 398805.0977045877 359634.0325795913 380428.913529241 434579.1274511875 392635.76471126726 397414.2655299449 395142.4930391313 0.8857197677873727 1.0035457067809352 1.1701452846189748 1.009269073131787 0.9101375805309212 0.9627638642538169 1.0998035774607284 0.9936561408301491 1.0057492487667952 1.0 18.59201347438543 DFLIPIAWYEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLIPIAWYEDR 12 0 Q93099;H7C576 Q93099 HGD Homogentisate 1,2-dioxygenase 0 108.7 0.0039036 11557000.0 10955.0 13168.0 10136.0 10558.0 10265.0 10299.0 13586.0 8615.4 16659.0 11862.0 False True 10896.019497214926 13606.288919775909 11563.060696308634 11894.641717463866 11572.186904578235 9587.054371238246 12928.793276439957 9258.32489611476 12553.61266916333 11104.957004430862 0.9811852034066795 1.2252446285336376 1.0412521805978168 1.071111010399943 1.04207399451983 0.8633130562696483 1.1642362299359996 0.833711007833772 1.1304512628148364 1.0 13.438916186696886 2.9922067575444093 17.27462910900333 0.9855577671173327 1.0835053651213984 0.10097103937272933 0.11118825926263291 11.772095406824302 26099.965767591286 0.030653971192769636 0.03490646737293125 982.2154417518313 -2.9922067575444093 0.09794759800406572 DFLLDIEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFLLDIEDR 9 0 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 0 ; 122.13 0.0013826 28103000.0 74879.0 101817.0 93398.0 93804.0 83413.0 98400.0 91860.0 93986.0 114626.0 93945.0 False True 74475.85978383895 105205.91729532374 106547.62657003092 105679.57678205926 94035.1511224145 91597.83960868465 87416.38086072239 100999.71257123764 86377.95820970755 87949.3496696391 0.8468039850617416 1.1962102925206934 1.2114657694485729 1.2015958864848866 1.0691966623475362 1.0414839899641128 0.9939400483241926 1.1483849846601384 0.9821329951178251 1.0 16.424385289459813 3.018858225985982 24.035057182205435 1.0485189474420258 1.127918564379633 0.09788215000683365 0.10763847141201693 359.7372343571564 458484.7412200606 0.03106421480416936 0.03712237520687828 1044.3792293807007 -3.018858225985982 0.07939961693760722 DFLLKPELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFLLKPELLR 10 1 O00148;O00148-2;O00148-3;K7EQN7;K7EPJ3;A0A0G2JJL7;F6QYI9;K7EIL8;K7ENP6;K7EN69;K7EL56;F6SXL5;Q13838-2;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;F6R6M7;F6U6E2;F6S2B7;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ; 125.97 0.00036021 18454800000.0 16093100.0 17546000.0 15453500.0 14617000.0 16884300.0 21092000.0 19950000.0 18740600.0 28720000.0 19322900.0 False True 16006456.537711488 18130008.00321904 17629218.47577009 16467510.701285215 19034415.523913316 19633959.68522742 18984942.283599082 20139118.734838553 21642340.828283288 18089695.97883302 0.8848383387117641 1.0022284522876 0.9745447627421854 0.9103254538138207 1.0522241803392232 1.0853670348137063 1.0494892952216335 1.1132922719322418 1.1963905227377654 1.0 24.10866482598409 3.086253682665883 4.4111746050964165 1.0920954002954706 0.9499307357450294 0.6052432784911137 0.05570449613877745 0.147193555805731 5.270372673403939 0.016247613497097895 0.019566976547145013 1219.7018503536867 -3.086253682665883 -0.1421646645504412 DFLLPFLEEPMDTEADLQFRPR ddPTM_BT-474_Trastuzumab_2h_R1 8 DFLLPFLEEPMDTEADLQFRPR 22 1 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;;;;;; 250.79 8.288799999999998e-32 1694554300.0 675496.8 795992.3 696634.6 754668.1000000001 765844.9 759225.8 756565.5 692498.2 864936.0 802496.6 False True 671860.0002835502 822486.4225179929 794714.6964235097 850209.0040821371 863370.7084966415 706742.3074712948 719967.5364041241 744175.9321186077 651784.1123486073 751280.5799360952 0.8942863934280045 1.0947792934937233 1.057813442337494 1.1316797303005715 1.149198756834738 0.9407168591146216 0.9583204406339978 0.9905432830193857 0.8675641694399299 1.0 19.518992284552507 2.7164704658138525 24.87170994571924 0.9547373854891641 1.0704191872902193 0.3798571396088828 0.0727141734491107 803.321313643909 904473.0011409915 0.023445257220242013 0.022120290970742203 520.5596069538396 -2.7164704658138525 0.11568180180105525 DFLLQQTMLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLLQQTMLR 10 0 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 112.13 0.0038658 220490000.0 96474.0 104750.0 120500.0 87880.0 76023.0 111780.0 121730.0 98707.0 123730.0 123430.0 False True 95954.59470326894 108236.54042728784 137465.35259522393 99005.59898946053 85704.07842637617 104052.91170181685 115841.45484624134 106073.01756398987 93238.39939705754 115552.59172626035 0.8303975987884521 0.9366863937045743 1.1896345252114644 0.8568011977091867 0.7416889326844858 0.900480985734307 1.0024998411170671 0.9179631194709399 0.8068914595869535 1.0 16.81819009277711 DFLMLAQTHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLMLAQTHSK 11 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 134.98 0.00012963 536040000.0 552730.0 624850.0 665110.0 574930.0 507550.0 701800.0 688880.0 661430.0 835340.0 765340.0 False True 549754.1630940762 645647.7545201989 758751.7067602437 647716.0790510983 572183.4840154581 653286.217859502 655556.2426228437 710789.2652734849 629481.6499825254 716495.345959461 0.7672822526961411 0.9011192580122208 1.058976462358171 0.9040059823190336 0.7985864629019266 0.9117801274545398 0.9149483612416023 0.992036123167925 0.8785565091697626 1.0 19.45059780783838 7.999984056608955 0.01722732304285715 1.6571826706043307 3.491636753091353e-08 0.15661149866139357 0.07730725427267426 8918.480762303338 11.851061380105007 440.52783076057113 734.072889518279 99996328.96592897 -7.999984056608955 -1.657182635687963 DFLPEGEDVHNFLLEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLPEGEDVHNFLLEQK 17 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 0 209.57 4.1577e-12 73578000.0 63089.0 63167.0 46650.0 57805.0 58958.0 63040.0 54789.0 54640.0 83791.0 58886.0 False True 62749.33583384685 65269.475409742176 53217.91451093109 65123.1070731198 66465.95182855563 58682.19318019804 52138.64675569478 58717.51425629809 63141.83079187622 55127.84506515898 1.1382512006351702 1.1839656589622936 0.9653545218034475 1.181310588072993 1.2056693264537266 1.0644746427297849 0.9457769788401654 1.065115354806564 1.1453709231196143 1.0 15.750493587461856 2.4937314021515538 24.596012842981125 1.0384198947997922 1.131221439938034 0.2577154375969478 0.0778489457298751 870.7742778521359 1289428.7375023323 0.025951358222145185 0.023892894258909416 311.6961242689993 -2.4937314021515538 0.09280154513824179 DFLRPFEHIMK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFLRPFEHIMK 11 1 Q9Y6D6;E5RIF2;E5RHL7;Q9Y6D5 Q9Y6D6;Q9Y6D5 ARFGEF1;ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 1;Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 ; 79.492 0.016221 932760000.0 1311760.0 1459360.0 1325310.0 1298920.0 1276300.0 1500830.0 1441620.0 1223610.0 1857380.0 1492050.0 False True 1304697.629910238 1507933.9153982515 1511902.1281989724 1463363.138818733 1438829.2397772225 1397081.1546738036 1371883.3330767963 1314921.9915656808 1399653.5866168793 1396826.091591726 0.9340444295563632 1.079543061570331 1.0823839397760058 1.0476344532991833 1.0300704206760862 1.0001826018883904 0.9821432613085666 0.94136413937349 1.0020242283861776 1.0 20.413720982042786 2.5850389779475864 2.061371890762466 0.9728236397503033 1.0418705386339975 0.25750659286685296 0.041692279773459136 0.3639834068476925 3.0796246031598784 0.01612866896255036 0.014321069603062312 384.62630072258975 -2.5850389779475864 0.0690468988836942 DFLSCRPTEIPENDILLCESR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLSCRPTEIPENDILLCESR 21 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9 Q86U86-8 PBRM1 Protein polybromo-1 0 121.44 2.7108e-05 384290000.0 80358.0 97109.0 88148.0 101580.0 84790.0 95112.0 88993.0 81527.0 97162.0 93880.0 False True 79925.36145661303 100341.21436136977 100558.47220384887 114440.0175847679 95587.50391029597 88537.13130956519 84688.06860372603 87610.95872571766 73217.72700409671 87888.4980252883 0.9093950090444824 1.1416876680780053 1.144159639352524 1.3021046002156038 1.0875996980036275 1.0073801839700374 0.9635853440043838 0.9968421431039728 0.8330751878707685 1.0 16.423386751657056 2.6687497391916595 2.6975493987684325 0.9560369131413909 1.1324200550757768 0.39272977276745935 0.09930045009289534 0.2922329651818228 4.186661924712955 0.03540298874056104 0.03379390016546826 466.39054680125713 -2.6687497391916595 0.17638314193438587 DFLSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLSGR 6 0 A0A494C0D8;Q75N90 A0A494C0D8 FBN3 Fibrillin-3 0 114.6 0.05850900000000001 284210000.0 109470.0 220690.0 285360.0 228100.0 273440.0 250720.0 312240.0 230900.0 248230.0 190640.0 False True 108880.62568326027 228035.53324007755 325536.2076064159 256977.43661238032 308260.9631941426 233388.31653139685 297135.7583273677 248130.9304864425 187057.04261158608 178473.1919848844 0.610067116928585 1.2777018817447428 1.8240061937928853 1.4398657510095114 1.727211575956183 1.3076939675688852 1.6648761364257625 1.390298048277512 1.0480960223282647 1.0 17.445347861324155 1.239567441962929 4.786385753582961 1.0088096939902025 1.436263891599566 0.18352706691926757 0.3181304209760623 0.2852764860641916 16.046809541405917 0.2662139138350878 0.07882590331069664 17.360708378704413 -1.239567441962929 0.42745419760936354 DFLSNEASLGAIGTS(ph)LPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFLSNEASLGAIGTSLPSR 19 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 DFLSNEASLGAIGT(0.18)S(0.819)LPS(0.001)R 106.86 0.00032066 172070000.0 335310.0 241370.0 214770.0 285060.0 215170.0 253570.0 230190.0 238390.0 351810.0 290010.0 True False 333504.7282164435 249403.85453875392 245007.749185695 321148.56677214004 242570.6240874913 236041.30273957519 219054.83028880574 256179.87231989185 265111.1395124771 271501.31350994733 1.2283724299706729 0.9186101213083678 0.9024182830582083 1.1828619265975437 0.8934418067874428 0.8693928573974543 0.8068278840234043 0.9435677087820272 0.9764635613918085 1.0 18.050599652170696 DFMDYMGAQHSDSKDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFMDYMGAQHSDSKDPR 17 1 Q9H6W3;Q9H6W3-2 Q9H6W3 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 0 59.606 0.051029000000000005 107840000.0 358700.0 386530.0 331480.0 347580.0 353180.0 411520.0 385600.0 388780.0 502730.0 455380.0 False True 356768.79905531625 399395.4173876804 378149.50272418925 391583.5923618196 398155.37953813345 383072.5910138818 366947.05486495275 417792.7377848386 378838.9277368677 426317.2585295677 0.8368622004322919 0.9368502198697168 0.8870142954767624 0.9185262490016244 0.9339414991347786 0.8985622405603675 0.8607370391961336 0.9800042795027079 0.8886314596869479 1.0 18.701567935300535 -4.999999999354038 0.13519332472997514 1.3114063260703823 0.8732635016900065 0.3816741644538387 0.03778512292407882 146.63248520790086 1.2327779088276716 12.309825415635473 0.24395134208709884 1.0000000014873833e-05 4.999999999354038 -0.4381428243803758 DFMHVLEHECQHHHSK ddPTM_BT-474_Trastuzumab_2h_R1 5 DFMHVLEHECQHHHSK 16 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;;;; 206.95 5.7514e-12 4308370000.0 1600208.0 2499898.0 2745369.0 2653076.0 2661899.0 2956011.0 2714181.0 81396.4 2711685.0 851545.0 False True 1591592.6579278219 2583105.5937097496 3131893.092024875 2988955.149573989 3000876.0593385166 2751668.9172714185 2582885.6958516953 87470.61269054431 2043426.5664673876 797198.6690556463 1.9964818303236844 3.240228181476609 3.928623081790747 3.749322804458111 3.7642763037892735 3.4516727436725634 3.239952343261381 0.10972247707608586 2.5632588786030097 1.0 19.6045797759981 1.760218867455541 24.99999999795834 1.1803309239854352 3.3940702277633363 0.6238366708840482 0.75127930117546 6.2928723152515085 7269.793336037696 0.335925124012967 0.1862923149044494 57.57300096755865 -1.760218867455541 2.213739303777901 DFMIQGGDFTR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFMIQGGDFTR 11 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 ;;; 225.22 1.3104e-11 2221330000.0 1967230.0 1718740.0 1548650.0 1341750.0 1408120.0 1684550.0 1815790.0 1655320.0 2286210.0 1792860.0 False True 1956638.6522597992 1775947.2218997276 1766686.4588928937 1511615.4124272747 1587435.7354188694 1568101.0235041662 1727953.300708589 1778848.3839446427 1722804.179144483 1678438.13985533 1.1657496369979106 1.0580951300670527 1.0525776416431827 0.9006083551923848 0.9457814963354536 0.9342620298412223 1.0295007362365625 1.0598236191760795 1.0264329308514026 1.0 20.678687935690274 4.584688413649859 1.6803911866087489 0.9923633649611814 1.1922452682612235 0.5537552651727763 0.04859233411821203 0.6179861841312202 2.1711118601918704 0.014957869108368623 0.18131436605816098 38431.595405905144 -4.584688413649859 0.19988190330004207 DFMVQGGDFSEGNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFMVQGGDFSEGNGR 15 0 Q13427;C9JM79;Q13427-2;C9JN15 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G;Peptidyl-prolyl cis-trans isomerase 0 ; 237.32 2.2876e-17 492790000.0 605020.0 676130.0 625590.0 641020.0 600640.0 658460.0 648970.0 592820.0 689440.0 660870.0 False True 601762.6395440407 698634.5783207833 713667.6342742414 722173.0662747384 677127.943727801 612942.2100481149 617576.84179385 637059.238678965 519536.75002268807 618692.7108007269 0.9726357350569479 1.1292109412709805 1.1535090390035396 1.1672564645865713 1.094449525437993 0.9907054008359504 0.9981964083503865 1.0296860259666996 0.839733103288531 1.0 19.23886351121107 2.7474092721281673 3.7204759129458522 0.9787293301079001 1.1129563715551194 0.4767713592717501 0.06880148496587149 0.2122514553887768 6.5666596188255255 0.022629152340405176 0.022785985268036203 558.9967361207983 -2.7474092721281673 0.1342270414472193 DFNGDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFNGDFR 7 0 A0A2R8YFH5;Q15437 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ;;; 96.19 0.030042000000000006 3117220000.0 4381370.0 5209810.0 4745160.0 4897800.0 4841530.0 4950320.0 5052660.0 4568730.0 5652940.0 4800110.0 False True 4357781.190735973 5383215.376453351 5413237.282329905 5517860.977817254 5458070.147503431 4608116.03019984 4808243.532764399 4909671.832140867 4259848.682515167 4493762.870219071 0.969739907643042 1.1979304498082959 1.204611244221262 1.2278932238247493 1.2145879311244898 1.0254470837209961 1.0699815881762353 1.0925524941865745 0.9479469223322633 1.0 22.099492566787017 2.7308890264715786 24.7636132045753 1.041340987866778 1.1708179555428875 0.42085261664410234 0.07849197664015851 538.0796857582857 1736897.8261799454 0.02542656840570558 0.024390573332694565 538.1322581672783 -2.7308890264715786 0.1294769676761094 DFNHINVELSLLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFNHINVELSLLGK 14 0 A0A2R8Y5Y7;P32969;D6RAN4;E7ESE0 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 ;;; 222.94 8.6261e-12 7689159000.0 2708907.0 2882522.0 2602117.0 2412878.0 2513984.0 2849873.0 2981713.0 2647377.0 3573800.0 2888937.0 False True 2694322.5456998595 2978465.002248655 2968472.4555935785 2718348.107402048 2834124.9608494123 2652867.987389443 2837476.1509402017 2844937.7148480196 2693084.87646653 2704562.5673165964 0.9962137974767221 1.1012742090872825 1.0975795093321976 1.0050971422336623 1.0479051197034663 0.9808861586151273 1.0491442073590034 1.0519030874817956 0.995756174773411 1.0 21.36696384249067 3.7305974902994747 24.89892853468023 1.0240131146515008 1.0686476760895716 0.25142253309530094 0.03566692125542325 777.2269877416971 2430217.228595581 0.009291044824027919 0.014683844289428673 5377.711382831374 -3.7305974902994747 0.04463456143807076 DFNLPEYDLNVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DFNLPEYDLNVEER 14 0 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 Q96RT1-7 ERBB2IP Protein LAP2 0 80.52199999999998 0.037365 14048000.0 20125.0 23514.0 23866.0 22766.0 23598.0 29056.0 23945.0 18427.0 22349.0 25901.0 False True 20016.64923609771 24296.649275486823 27226.125353009276 25648.173265749436 26603.065423695796 27047.427110466888 22786.688871217055 19802.11631041004 16841.388411257067 24247.97600503825 0.8254977335815017 1.0020073127109026 1.1228205334479144 1.0577449128298482 1.097125195858335 1.115450918660055 0.9397357068681704 0.8166502765548578 0.694548213333672 1.0 14.565576709143722 1.9381722045518037 3.4586320135051714 0.8206990022066615 1.0425826572674186 0.411128724870345 0.10616506740255913 0.2179375403986453 4.820298130993748 0.05198154019091978 0.029515108953840644 86.7305707858872 -1.9381722045518037 0.22188365506075713 DFPAMVQELHQGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFPAMVQELHQGGR 14 0 P10253 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase 0 ; 219.84 4.8598e-12 1413660000.0 909050.0 1150750.0 1099440.0 1023910.0 1003890.0 1076100.0 1077590.0 944590.0 1135220.0 947590.0 False True 904155.7758049486 1189052.0181069365 1254231.5954962089 1153536.9010161418 1131729.4409777925 1001711.7398669276 1025462.854906444 1015080.102330831 855460.2421686541 887113.9949273863 1.019210361886983 1.3403598916329407 1.4138336252928494 1.3003254458978106 1.275742968151944 1.129180404767396 1.155953869254855 1.1442499026451716 0.9643182804693289 1.0 19.758759978455092 1.840304541525842 0.8201199188419896 0.987749108297573 1.2816645591168863 0.4901623044619846 0.10419110191694424 0.5129556309034006 0.6498432873623724 0.09322387866449264 0.0434223337837841 69.2316275608196 -1.840304541525842 0.29391545081931325 DFPDSFQAGS(ph)PGHLGVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFPDSFQAGSPGHLGVIR 18 0 A1YPR0 A1YPR0 ZBTB7C Zinc finger and BTB domain-containing protein 7C 1 DFPDSFQAGS(1)PGHLGVIR;DFPDSFQAGS(1)PGHLGVIR 187.62 2.7055e-14 394370000.0 94309.0 168264.0 170004.0 190107.0 184604.0 152908.0 146826.0 124259.0 129378.0 141987.0 True False 93801.25082271488 173864.565522264 193939.0854987424 214174.52670789018 208112.22516636722 142337.82986671518 139723.46545021166 133531.83755441685 97494.52547638003 132925.2680988136 0.7056690737910356 1.3079873225684755 1.4590084208411942 1.6112401334310475 1.5656332926232006 1.0708109293479438 1.0511430027460575 1.004563236653789 0.7334536681461108 1.0 17.020255850652102 2.544620897240759 5.206999857726843 0.967687952388877 1.3514041576154807 0.34984165205417694 0.24676239824888258 0.2572341292874967 13.441132859480224 0.08596343297636226 0.07965336265039467 350.4458304973463 -2.544620897240759 0.38371620522660377 DFPFELIPEPPEGGLPGPWALHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFPFELIPEPPEGGLPGPWALHR 23 0 E9PS17;Q96KG9-2;Q96KG9;Q96KG9-3;E9PK59;Q96KG9-4;Q96KG9-5;Q96KG9-6 E9PS17 SCYL1 N-terminal kinase-like protein 0 68.40100000000001 0.025707 145850000.0 128180.0 154950.0 149430.0 147520.0 140430.0 145000.0 149110.0 149060.0 169580.0 149480.0 False True 127489.89312213667 160107.4170807469 170468.44513115633 166196.01687443344 158312.9281061785 134976.49129328557 141896.9796444841 160183.61411134325 127789.2812555806 139940.0584237334 0.9110321558970764 1.1441142649515514 1.2181533082899259 1.1876228918755911 1.1312909962264894 0.964530762768311 1.0139839960251067 1.144658762584714 0.9131715585585888 1.0 17.09444947351463 2.7643438509491696 23.135136520043588 1.0273143453813312 1.1292517781600961 0.23761345301416237 0.09529919557058095 490.28347426049464 439926.6850329268 0.030009126485287613 0.03181365609544393 581.224417543922 -2.7643438509491696 0.10193743277876499 DFPGIYTTINAHQWSETVQPIMEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFPGIYTTINAHQWSETVQPIMEALR 26 0 E9PGT6;Q99627-2;Q99627 E9PGT6 COPS8 COP9 signalosome complex subunit 8 0 ; 232.32 1.3734e-35 728130000.0 85688.0 90194.0 81951.0 113578.0 91502.0 99118.0 90976.0 104039.0 105537.0 109429.0 False True 85226.66532883172 93196.05276657552 93488.98846913851 127956.96315458545 103154.2373251552 92266.20595867485 86575.14331793033 111802.9184793375 79528.8204733472 102445.14753311957 0.8319248630227091 0.9097166143125139 0.9125760538234804 1.2490290290539934 1.0069216532857879 0.9006400808671395 0.8450877899311081 1.0913442087942005 0.776306368709521 1.0 16.644492125006572 3.9848066866490606 24.92382310035323 0.9883266510607981 0.8809020679434779 0.11505454747089339 0.12467892324635982 1383.4164585365675 2269433.793640297 0.03209483523706772 0.06047072818272778 9656.209656860481 -3.9848066866490606 -0.10742458311732017 DFPQMGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFPQMGR 7 0 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ;;; 117.62 0.012074 876030000.0 862540.0 959760.0 921690.0 946820.0 872760.0 927670.0 878180.0 793530.0 1024850.0 1011280.0 False True 857896.1804772031 991705.0314128275 1051455.9405269052 1066687.3149203593 983900.8127461954 863542.3564002912 835699.0784266187 852747.2380636937 772289.4497864252 946739.2445996326 0.9061588873291079 1.0474954292532899 1.1106077481466994 1.1266959947049113 1.0392521682802724 0.9121227004437483 0.8827130418365917 0.9007202806136053 0.8157361746560104 1.0 19.852607600949558 2.7303610211879277 4.035215267673076 0.893066012764086 1.0556780202116436 0.5162335240769249 0.06937741685644998 0.1663340479760365 6.449724373161135 0.022805377150027478 0.02263593823116625 537.4784068429044 -2.7303610211879277 0.16261200744755755 DFPYEEDSRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFPYEEDSRPR 11 1 H0Y6J6;Q5W012;Q96I25;Q5W010;Q5W011 H0Y6J6 RBM17 Splicing factor 45 0 ; 196.24 5.5778e-08 746830000.0 333660.0 354080.0 337730.0 331840.0 313080.0 357090.0 355180.0 325030.0 401750.0 355320.0 False True 331863.6116331113 365865.33875412017 385279.4483982161 373850.9099756786 352948.88222945464 332405.208799443 337998.58648063784 349285.38906889764 302744.09567419207 332643.1733952434 0.9976564624664465 1.099873281690355 1.1582364503853226 1.1238797001598844 1.0610435158700346 0.9992846250431909 1.0160995730972995 1.050030233609755 0.9101166652065168 1.0 18.343615901032596 2.917895028726981 3.428633632355356 1.0043284611107932 1.0995405892299202 0.46033617193773835 0.050688239727288247 0.24250479936607658 5.45593385750377 0.016426081322498714 0.018012937709736245 827.7420698956781 -2.917895028726981 0.09521212811912694 DFQDYMEPEEGCQGS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 6 DFQDYMEPEEGCQGSPQR 18 0 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR 404.17 3.9841999999999977e-147 3534710000.0 2341208.0 2245694.0 2057479.0 2074832.0 2008490.0 2480246.0 2327475.0 2131786.0 2615987.0 2577673.0 True False 2328603.1962606595 2320440.5672393125 2347154.1592719425 2337505.5184626826 2264259.2962470884 2308792.431891077 2214886.1424320675 2290870.696309965 1971312.0562798851 2413163.7022831147 0.9649586532639904 0.9615761106649847 0.9726460567309545 0.9686477201074875 0.9382949420732847 0.9567491959649107 0.9178350148133527 0.9493225404238232 0.8168994314040154 1.0 21.20249435659819 2.412364461263578 1.153919454026394 0.9163975332363693 0.9653380194581135 0.16277085391386337 0.043276869370259374 0.8240238933433289 2.188717598247332 0.024511661028461657 0.016403291222839053 258.4428140868557 -2.412364461263578 0.048940486221744184 DFQDYMEPEEGCQGS(ph)PQRR ddPTM_BT-474_Trastuzumab_2h_R1 6 DFQDYMEPEEGCQGSPQRR 19 1 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR 244.71 9.5788e-25 6228110000.0 2543194.0 2876728.0 2507253.0 2590205.0 2682120.0 3283040.0 3184484.0 2652598.0 3790870.0 3424930.0 True False 2529501.7260794174 2972478.1524612 2860252.4289662526 2918124.6874202956 3023672.08382926 3056091.1722448845 3030438.343009765 2850548.3323797164 2856660.8835555073 3206348.0351699013 0.7889042918403527 0.9270603564730275 0.8920592517071187 0.9101085270257216 0.9430267864446096 0.9531376939506023 0.9451370561677609 0.8890327254285946 0.8909391158480822 1.0 21.61249960160448 5.505413796277598 1.5082797534563912 0.9254513145114593 9.26468332322519e-16 0.5997777683495971 0.033601598750665554 7.220543224363327 2.6841368979173286 0.008823740978491213 17.46064368381101 320194.44730874914 -5.505413796277598 -0.9254513145114585 DFQEYVEPGEDFPAS(ph)PQRR ddPTM_BT-474_Trastuzumab_2h_R1 3 DFQEYVEPGEDFPASPQRR 19 1 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR 252.84 4.4931e-31 1229470000.0 498880.0 533950.0 524650.0 591670.0 548830.0 606710.0 609230.0 540050.0 666850.0 596180.0 True False 496194.08551077923 551722.2029704084 598516.1596604496 666575.3613347077 618720.2473297301 564769.5657417187 579759.2174153925 580351.2733183338 502513.752832197 558131.2819846232 0.8890275487630698 0.9885168969719361 1.0723573090765033 1.1942985151530572 1.1085568347462311 1.011893767597994 1.038750623964068 1.0398114064753725 0.9003504534727755 1.0 19.090244982855772 -0.7916137859487026 7.301272989503415 0.9999999995851806 1.0351102178984246 0.0010244879195322465 0.08623705728402435 0.0 0.0 0.08634815910326024 0.020352456281630082 0.1615794829442638 0.7916137859487026 0.03511021831324401 DFQHVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFQHVEK 7 0 M0R2W4;Q9UGK3;Q9UGK3-2 M0R2W4 STAP2 Signal-transducing adaptor protein 2 0 ; 93.551 0.014852 448530000.0 542360.0 568410.0 514250.0 456810.0 486760.0 645500.0 585110.0 526870.0 688110.0 623690.0 False True 539439.9940218608 587329.1832388992 586651.9300588707 514642.0991622159 548746.0007474428 600878.1043435561 556805.9939627406 566187.7147916496 518534.5107016019 583885.5702321271 0.9238796461563578 1.005897753228262 1.0047378458516174 0.8814091757013569 0.9398177121063048 1.0291025073708766 0.9536217751388841 0.9696895139343115 0.8880755701762856 1.0 19.155326132181717 -2.352445268181099 2.3135396490812816 1.2716729158326892 0.9584532219005872 0.07232217546252695 0.04686745435199651 11445558.365207743 1500731.6363938772 16359701.068224424 0.011668234456360045 0.0044417563492644314 2.352445268181099 -0.3132196939321019 DFQQALYELSYHVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFQQALYELSYHVIK 15 0 Q8NI27;F2Z2V2 Q8NI27 THOC2 THO complex subunit 2 0 155.1 2.3621e-06 270210000.0 139670.0 162710.0 168520.0 170220.0 149010.0 218210.0 211530.0 195860.0 272610.0 183610.0 False True 138918.03223879577 168125.70398972795 192246.15119790143 191769.83454695035 167985.54024853418 203125.6563110886 201297.48577692817 210476.06775692783 205428.9182868491 171891.85260357047 0.8081711269886577 0.9780900109179212 1.1184133993905665 1.1156423742155128 0.9772745927403242 1.1817061322827895 1.1710705465556597 1.2244679696503307 1.1951056153930941 1.0 17.391141639456475 5.578506702324312 0.6650763154718008 1.1554614087041544 1.0899628500766407e-11 0.6138374565086748 0.07777509549342568 5.485152045245629 0.8059695376232608 0.03156076674799722 6.188871107253711 378884.38090171304 -5.578506702324312 -1.1554614086932546 DFQQLLAELEQEVERR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFQQLLAELEQEVERR 16 1 Q6N063 Q6N063 OGFOD2 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 0 ; 159.81 1.4432e-08 33430000.0 26904.0 32372.0 26681.2 32023.0 29559.0 33080.0 31302.0 29791.0 36968.0 31226.0 False True 26759.15185331542 33449.48245071274 30437.6810428522 36077.10851660784 33323.163440080694 30793.257461944017 29787.80267474779 32014.155695632813 27857.7317458209 29233.129946076384 0.9153707421229106 1.1442319899516018 1.041204999225117 1.2341172013792536 1.1399108990911617 1.0533684733295905 1.0189741136065333 1.0951326715506116 0.9529507034384429 1.0 14.835316684093248 2.5369799080044744 6.157144742921168 1.0324147357388922 1.1022644304824887 0.14897810979088622 0.08408864193490145 0.46666136274928877 36.808573393975756 0.027382671166357793 0.02549080716570902 344.33400028870045 -2.5369799080044744 0.06984969474359648 DFQQLLQGISEDVPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFQQLLQGISEDVPHR 16 0 G5E9X1;B3KQH5;Q9UL03-3;Q9UL03 G5E9X1 INTS6 Integrator complex subunit 6 0 ; 120.63 0.00010313 107174000.0 67402.0 73729.0 69051.0 78054.0 71469.0 75601.0 70809.0 74192.0 86383.0 83620.0 False True 67039.11512106624 76183.02519487838 78772.78059794859 87935.62839694318 80570.15352004884 70374.88081561151 67383.69815335184 79728.58377934241 65095.06712289678 78283.30000931617 0.8563654714746082 0.973170844686059 1.0062526820991726 1.1232999680197224 1.0292125333303594 0.8989769313153188 0.8607672152979344 1.0184622233586762 0.8315319757234313 1.0 16.25641695317802 2.739223870437426 24.994511184585846 0.9259178560640358 1.0037571114238333 0.17670701178284387 0.08095446643399011 109.74860605601087 4135887.184573452 0.026227882630602467 0.026335243458625972 548.5596639887599 -2.739223870437426 0.07783925535979752 DFQYVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFQYVDR 7 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 0 ; 164.72 0.0027617 819830000.0 796270.0 953890.0 848770.0 876490.0 890670.0 948290.0 946370.0 867650.0 972520.0 928960.0 False True 791982.9707939139 985639.6520113191 968269.4383589071 987453.5441314552 1004091.5450853104 882736.94433455 900590.4676155231 932398.4488374278 732855.4771003504 869672.9774773311 0.910667562755861 1.1333451510363972 1.1133718805056767 1.135430868503896 1.154562198767965 1.0150217003351232 1.035550708069457 1.0721253539946074 0.8426793703837406 1.0 19.730113481760547 1.260026409122034 24.04000498581875 0.9213398046600808 1.0757335675992679 0.37586669542827156 0.07710301765039985 127.04954131954105 142286.67368450869 0.05012687358847254 0.018259592194808133 18.198115166202008 -1.260026409122034 0.15439376293918705 DFS(ph)PVPWSQYFESMEDVEVENETGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSPVPWSQYFESMEDVEVENETGK 25 0 Q9Y570;Q9Y570-4 Q9Y570 PPME1 Protein phosphatase methylesterase 1 1 DFS(0.998)PVPWS(0.002)QYFESMEDVEVENETGK;DFS(0.922)PVPWS(0.077)QY(0.001)FESMEDVEVENETGK 164.62 1.0589e-11 37192000.0 92103.0 65434.0 59170.0 49142.0 53812.0 81005.0 68390.0 69109.0 89534.0 74169.0 True False 91607.12768160521 67611.93113431161 67500.62168514032 55363.372161357234 60664.639231287285 75405.31501525913 65081.71442482915 74266.26450839137 67469.54539413344 69435.47092072446 1.3193131185960338 0.9737376334857034 0.9721345702718256 0.7973355898250686 0.8736837012389392 1.0859768647835706 0.9372978041602676 1.0695724177226693 0.9716870138486489 1.0 16.08338522748585 4.738783975060438 6.196767870767873 0.965759262762193 1.3278253018317951 0.638531057620968 0.08008261819427334 0.08530770354012027 17.340485055146285 0.020443503768339467 0.12995676043385046 54800.43111094627 -4.738783975060438 0.3620660390696021 DFSALESQLQDTQELLQEENR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSALESQLQDTQELLQEENR 21 0 P35579 P35579 MYH9 Myosin-9 0 ; 287.84 7.818099999999999e-46 69390000.0 52925.0 57357.0 47464.0 51225.0 53504.0 57649.0 61863.0 52180.0 61516.0 60378.0 False True 52640.05768052028 59266.09307196134 54146.51863551629 57710.079747782416 60317.417256946355 53663.86032114904 58870.450350390514 56073.9365646712 46356.20607216828 56524.624347793535 0.9312765593386046 1.0485004324363072 0.9579279696288671 1.0209723711332397 1.0670998339735251 0.9493890660990095 1.0415009569663518 0.9920267000741257 0.8201063979999332 1.0 15.786591878673512 1.4440128351186223 24.865129745613316 0.9087240824621295 1.004540869332084 0.2799708677786308 0.05852233730310072 27.654395164578126 20772.008716605804 0.028623409431438113 0.01317699584190907 27.79795420487983 -1.4440128351186223 0.09581678686995454 DFSAPTLEDHFNK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFSAPTLEDHFNK 13 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 ;;; 240.18 7.7392e-17 2183580000.0 1046390.0 1055280.0 945610.0 876260.0 877690.0 1104730.0 1133110.0 988590.0 1424560.0 1107440.0 False True 1040756.3525048596 1090404.3568697695 1078743.6686105374 987194.4261550378 989458.619023797 1028362.6153546975 1078297.140399446 1062363.6057583047 1073496.2761260185 1036762.2310729148 1.003852495116273 1.0517400462605029 1.040492830737263 0.9521898045354327 0.954373712090028 0.9918982236558475 1.0400621358318078 1.0246935834640656 1.0354315039187807 1.0 19.983653636682977 2.2453853892802687 24.991595602765926 1.0273090503698374 0.9992017133584196 0.1408008643825983 0.031210758292396452 338.3070895046246 1238844.9359524865 0.012357079367344972 0.010115814663849315 175.94842729832604 -2.2453853892802687 -0.028107337011417877 DFSELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFSELR 6 0 Q14320;B0S8I6 Q14320 FAM50A Protein FAM50A 0 102.98 0.081604 370360000.0 692110.0 997590.0 768910.0 926000.0 923580.0 759180.0 828780.0 748440.0 750490.0 808490.0 False True 688383.7566606496 1030794.1800941095 877165.8445144694 1043231.5050550818 1041192.4385124566 706699.6735174931 788688.7451529442 804292.3933013134 565541.7955507765 756891.4760168871 0.9094880553857512 1.3618784366797536 1.1589056982521744 1.3783105479599906 1.375616546762678 0.9336869233043468 1.042010341169898 1.062625777652923 0.7471900707970962 1.0 19.52972693417741 2.7269913554200746 24.547223615765418 0.9764510575175778 1.2473162533565028 0.45082979573359305 0.15341360394799064 554.5194535091525 1176556.5106978584 0.048360313937774804 0.04596830443861336 533.3242796257158 -2.7269913554200746 0.270865195838925 DFSESR ddPTM_BT-474_Trastuzumab_2h_R1 6 DFSESR 6 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;;;; 172.39 0.01195 10254020000.0 11793270.0 13563100.0 12361600.0 11864600.0 12449100.0 11929600.0 12899800.0 12169300.0 14404400.0 13149400.0 False True 11729776.344675472 14014539.584432907 14102005.83104665 13366657.14349517 14034419.093403319 11104934.831257764 12275787.391978525 13077434.960453287 10854628.629071161 12310194.034232281 0.9528506465501048 1.1384499338890328 1.1455551221883007 1.0858201833638907 1.1400648157434643 0.9020925909353725 0.9972050284375633 1.0623256566133286 0.881759345050657 1.0 23.55335016608415 2.75040274231412 24.979469689394925 0.982320528347764 1.097669298036725 0.4255447178915662 0.07095798071179114 778.425537613235 1641989.2288100766 0.021694599893705337 0.022847950242939237 562.8630534205097 -2.75040274231412 0.11534876968896113 DFSETYER ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSETYER 8 0 O94992;Q96MH2 O94992;Q96MH2 HEXIM1;HEXIM2 Protein HEXIM1;Protein HEXIM2 0 ; 169.57 0.00069853 942550000.0 794900.0 860900.0 791910.0 842090.0 793240.0 823330.0 865300.0 753400.0 946020.0 826550.0 False True 790620.3467216933 889554.5360749594 903404.044594887 948698.5076585667 894254.4120981619 766415.1350103489 823442.1332329961 809622.5336876824 712886.0470185418 773798.8713549421 1.0217388212744436 1.1495939952940564 1.1674920680783663 1.226027256924491 1.1556677648447573 0.990457809363738 1.064155252373433 1.0462958317191806 0.9212808048818418 1.0 19.561599098938004 2.743690596549256 24.807696237136334 1.0154745291389669 1.1502596196326325 0.5737079107780738 0.05970134139298085 303.07238789823316 1465608.3674481208 0.019070861639008542 0.01966067689414751 554.2307229138011 -2.743690596549256 0.1347850904936656 DFSGGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSGGWR 7 0 Q9UG63;Q9UG63-2;C9JHK9;C9JZV3 Q9UG63 ABCF2 ATP-binding cassette sub-family F member 2 0 ; 139.92 0.006187300000000001 589920000.0 577910.0 637780.0 658500.0 614410.0 617810.0 782000.0 674770.0 611980.0 787320.0 715080.0 False True 574798.5967718365 659008.121753848 751211.0762153941 692194.2430031231 696484.4414532369 727942.1806299948 642128.7972282778 657649.055171473 593295.5355474926 669442.9821892111 0.858622186003252 0.9844126225638531 1.1221434777892287 1.0339853600967044 1.0403939692901027 1.0873848856395205 0.959198638737521 0.9823824771765183 0.8862525283442344 1.0 19.352601657968677 -0.5342273097065567 6.272189807659759 0.9999999998883803 1.000761191759817 0.0 0.0778204059051356 0.0 0.0 0.07628490235730444 0.017980523919667875 0.29226222771211724 0.5342273097065567 0.0007611918714366395 DFSHDDTLDVPTQVELLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSHDDTLDVPTQVELLIK 19 0 P42345;B1AKP8 P42345 MTOR Serine/threonine-protein kinase mTOR 0 ; 133.47 1.1618e-05 111136000.0 86456.0 93469.0 91939.0 79011.0 80943.0 107118.0 99221.0 90939.0 122030.0 103294.0 False True 85990.53050216463 96580.05916179637 104883.21205188622 89013.78449881969 91250.61126325153 99713.18478864938 94421.30116897168 97725.32995888534 91957.34161822459 96701.68848555752 0.8892350469661902 0.9987422213027922 1.0846057984556352 0.9204987616334536 0.9436299685385523 1.0311421274049586 0.9764183298937287 1.0105855594598092 0.9509383244322408 1.0 16.561253460032056 2.7513062475450094 24.710116454484087 0.9943524702131533 0.9729990138290675 0.05448004018614916 0.0525445675707302 2850.599105415147 5526492.178990662 0.01638754992096203 0.01728862111034084 564.0352513049007 -2.7513062475450094 -0.02135345638408581 DFSHPQMPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFSHPQMPK 9 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 71.45100000000002 0.049544 312300000.0 437030.0 398540.0 361890.0 302420.0 275440.0 418440.0 411950.0 382530.0 538980.0 417620.0 False True 434677.0790385981 411805.16297748266 412840.9663957315 340706.34099217906 310515.6513392135 389514.22770180943 392022.40469817736 411076.3310479809 406155.60096198175 390967.1340575302 1.1117995380517998 1.0532986716906136 1.0559480079851995 0.8714449663741931 0.7942244354829109 0.9962838145993443 1.002699128772527 1.0514344947150767 1.0388484493487287 1.0 18.576687809526703 3.9692352733894563 21.1101007269763 0.9684049817978173 1.0755678761947722 0.3081539873376512 0.07507096859046467 137.79108258481327 94550.44983336003 0.02216557199163386 0.040084444846211875 9316.124277093173 -3.9692352733894563 0.10716289439695492 DFSMADK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSMADK 7 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ; 120.92 0.010442 441140000.0 850940.0 795900.0 755770.0 685320.0 664590.0 923120.0 914900.0 793890.0 1173260.0 877560.0 False True 846358.6335883226 822391.0503682895 862175.8467293971 772081.4417325569 749221.5971664543 859306.8871907428 870642.7917425965 853134.103091736 884125.7938785393 821553.369483084 1.0301931256405727 1.001019630514975 1.0494459383349284 0.9397824540824968 0.9119573055099995 1.0459538224904525 1.05975195779478 1.0384402703241573 1.0761635539695074 1.0 19.64799477254294 2.544343514384083 24.999446223792486 1.0471725577207844 0.9872676656273341 0.3248435573372701 0.041381840410426196 222.5745740310525 82773.15635741186 0.013967801025603402 0.013168965474377129 350.22207303995725 -2.544343514384083 -0.05990489209345029 DFSNSPLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSNSPLHR 9 0 O95758-1;O95758-6;O95758;O95758-5;O95758-4;O95758-2;O95758-7 O95758-1 PTBP3 Polypyrimidine tract-binding protein 3 0 ; 156.83 7e-05 963210000.0 429840.0 661580.0 648860.0 684780.0 657690.0 707380.0 755460.0 605920.0 738990.0 674670.0 False True 427525.789199714 683600.290366445 740213.8480077761 771473.077787924 741442.9230659589 658480.4855934082 718915.5136625445 651136.8271994165 556875.8164586723 631611.9829859536 0.6768804277249151 1.0823105146528664 1.1719439591826708 1.221435150962107 1.1738898929066832 1.0425395707035725 1.1382233602723344 1.030912719738405 0.8816739255421262 1.0 19.268679016804082 1.445825733781748 5.2699801735439165 0.9424151504655469 1.0849431441281139 0.10861586141696145 0.14573462562943792 0.3788404300356742 20.99174272370783 0.09586500883154385 0.03731770165737213 27.914235220728788 -1.445825733781748 0.14252799366256697 DFSSMKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFSSMKK 7 1 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2 P39023 RPL3 60S ribosomal protein L3 0 73.665 0.07741100000000001 737580000.0 490770.0 723610.0 560170.0 648080.0 539830.0 582640.0 674130.0 603040.0 1105200.0 669180.0 False True 488127.7488496725 747694.9214185185 639037.066915076 730126.8615508598 608574.1506769086 542363.4681870331 641519.7564733158 648041.9069750726 832838.2689212636 626472.3594861778 0.7791688515196852 1.1935002559917656 1.0200562837907223 1.1654574228138297 0.971430170001516 0.8657420554545624 1.0240192512235968 1.0344301662512065 1.3294094405128165 1.0 19.256891332408678 1.424998696446962 15.297182410296305 1.1705036056733316 1.0131740512563476 0.17504713016554074 0.13727076640689684 3.3787931744992474 989.553885141751 0.08081316019298998 0.03181880515394732 26.607170735333284 -1.424998696446962 -0.15732955441698393 DFSSSKRMNTGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFSSSKRMNTGEK 13 2 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764;P61764-2;A0A1B0GW76 A0A1B0GWF2 STXBP1 Syntaxin-binding protein 1 0 51.21100000000001 0.091005 138380000.0 154180.0 164560.0 151060.0 118210.0 147880.0 177430.0 195200.0 159660.0 271270.0 163360.0 False True 153349.91201100854 170037.28012137944 172327.934962942 133175.37387965556 166711.6414465687 165164.68172529383 185757.43026358617 171574.6399370524 204419.14333176886 152934.2249404677 1.0027180774656728 1.1118327515477284 1.1268107909136993 0.8708016399304758 1.0900872025961756 1.0799720061980047 1.2146230206868047 1.12188517647924 1.3366474601178548 1.0 17.222551776011688 2.4627608694538643 2.7181334859539263 1.1736891570934356 1.0402428975283242 0.24966350660247572 0.10350298585587187 0.3727484369278669 5.616368438938965 0.03751039005469336 0.031621004034894186 290.24240862083684 -2.4627608694538643 -0.13344625956511136 DFSSVFQFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFSSVFQFLR 10 0 P31937 P31937 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial 0 117.31 0.0022669 63534000.0 109880.0 141710.0 147780.0 99892.0 136660.0 164750.0 168310.0 128810.0 139280.0 141140.0 False True 109288.41828881559 146426.7316844959 168586.13947321323 112538.31695784238 154062.8409527192 153361.2202797848 160168.20229336162 138422.45628392661 104956.31025638216 132132.32436396665 0.8271134169090517 1.1081825161960703 1.2758886993377359 0.8517092051438423 1.1659738954439611 1.1606639103490062 1.212180312912444 1.0476047927729888 0.7943272833623476 1.0 17.011623919787034 1.4014615151654501 7.144918009004621 0.9005941556021987 1.093819545532587 0.20890370999774488 0.14423243938061298 0.322017936246362 23.84543056953254 0.0931551359650941 0.03450714392893519 25.203538295807668 -1.4014615151654501 0.1932253899303883 DFSVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFSVDR 6 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;B4DSP0;A0A087WZG9;Q86TG7-2 A0A087WXK2;B4DSP0 PEG10 Retrotransposon-derived protein PEG10 0 ;;; 153.67 0.0235 2573960000.0 3069610.0 3638080.0 3398460.0 3331520.0 3029670.0 3511920.0 3940340.0 3096380.0 3655850.0 3409120.0 False True 3053083.560825733 3759171.2935341955 3876933.6280561443 3753290.0904115587 3415480.5162390247 3269149.2365704477 3749730.700639436 3327447.5986990547 2754914.753380202 3191547.0429055295 0.9566155597212374 1.1778523841252582 1.2147505820646312 1.176009640451556 1.0701645535293849 1.0243149145607675 1.1748943851461282 1.0425814045560187 0.863191021891432 1.0 21.605824482374437 1.4558358893701067 4.803328112788352 0.9336662838876333 1.1166765033893133 0.43976540421900145 0.0813722863055229 0.16579587990224015 7.66062799722919 0.053582214741027284 0.020812794360592687 28.565109247991497 -1.4558358893701067 0.18301021950168006 DFSWSPGGNIIAFWVPEDKDIPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFSWSPGGNIIAFWVPEDKDIPAR 24 1 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ; 175.28 1.6874e-12 485610000.0 483060.0 592260.0 456930.0 541600.0 510970.0 622000.0 559820.0 545410.0 971410.0 655260.0 False True 480459.25863301114 611973.0160712694 521261.7722932425 610166.5044685011 576039.0007435306 579002.6040305074 532739.3678799216 586111.2637358622 732019.0217271113 613440.74580369 0.7832203222880879 0.9976073814097599 0.8497345112123573 0.9946624977920251 0.9390295716154978 0.9438606874278231 0.8684447055794463 0.9554488640430584 1.1933002930349332 1.0 19.22656447054389 1.39332820058729 6.567874842902028 1.0946406433337843 0.917601481044692 0.4814338795142177 0.07573197003660109 0.16453001083128596 9.842211741302714 0.0461688026411333 0.016933949851412184 24.73592757100785 -1.39332820058729 -0.17703916228909233 DFTEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFTEDR 6 0 P53602;H3BP35;H3BQ47 P53602 MVD Diphosphomevalonate decarboxylase 0 ; 148.07 0.025152 1876380000.0 1800310.0 2107540.0 1845060.0 1908590.0 2009580.0 2143170.0 2223770.0 1978410.0 2457000.0 2197480.0 False True 1790617.3309932444 2177688.1948651657 2104828.410450986 2150217.298307858 2265488.10128615 1995017.7023795228 2116197.7494736393 2126049.000362423 1851505.2721132308 2057234.9450427187 0.8704000169295502 1.0585510420735857 1.0231346767285636 1.0451977317851795 1.1012296416339102 0.9697568608713751 1.028661191359306 1.0334497795137711 0.8999969967332944 1.0 20.97227513454933 1.2591240284860166 24.98523283047785 0.9499984600875366 1.0213181110022356 0.14911134165718076 0.06243550339208438 337.4344014044936 409996.32192137145 0.0394020579893221 0.01435166428687154 18.160342229321117 -1.2591240284860166 0.07131965091469894 DFTEVLS(ph)PNMYNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFTEVLSPNMYNSK 14 0 B7ZLP8;A2RTX5-2;A2RTX5 B7ZLP8 TARSL2 Probable threonine--tRNA ligase 2, cytoplasmic 1 DFTEVLS(1)PNMYNSK 164.62 1.9466e-07 0.0 81231.0 91959.0 73552.0 76332.0 70598.0 95023.0 88539.0 73330.0 109600.0 87779.0 True False 80793.66132161257 95019.79972461071 83907.48227455534 85995.62337350375 79588.23683287037 88454.28367008187 84256.03031817448 78802.25696219511 82590.54856475795 82176.86906861722 0.9831679186286633 1.156284010349308 1.0210596147742386 1.046469941580494 0.9684992594012635 1.0763890699732432 1.0253010521466956 0.958934769057649 1.0050340138390441 1.0 16.326444744549708 2.9458983752945156 0.5815476072813666 0.9877968588167494 1.066866876220246 0.1389837818914189 0.05139276113891847 1.4717377264607183 1.0688956279515711 0.039096696500705914 0.055421498879328325 882.8732843101886 -2.9458983752945156 0.07907001740349662 DFTNEAPPAPLPDAS(ph)ASPLSPHRR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;Q6WCQ1-2;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 DFTNEAPPAPLPDAS(0.333)AS(0.333)PLS(0.333)PHRR;DFTNEAPPAPLPDAS(0.333)AS(0.333)PLS(0.333)PHRR 100.64 0.0019683 1047340000.0 371650.0 443300.0 403530.0 399070.0 415220.0 462910.0 457620.0 360300.0 447740.0 451380.0 True False 369649.0776941966 458054.9725194916 460343.51645436254 449592.2210824313 468095.8057982441 430910.1212729297 435483.1723218357 387187.41556632845 337400.47640861914 422572.5419541398 0.8747588662168997 1.0839676671874308 1.0893834093563086 1.063940924801555 1.1077288733280848 1.0197305278763114 1.0305524592487532 0.9162625990222253 0.7984439188792252 1.0 18.688839500882455 1.706499200318121 3.437817493518326 0.8871781849766529 1.046548369348626 0.3891273418256662 0.07632177666712035 0.18051893938850228 4.819332351221114 0.04225836988847642 0.019731304680317557 50.87438828756191 -1.706499200318121 0.15937018437197303 DFTNEAPPAPLPDASAS(ph)PLSPHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;Q6WCQ1-2;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 DFTNEAPPAPLPDAS(0.08)AS(0.46)PLS(0.46)PHRR 68.369 0.016026 599800000.0 178700.0 202960.0 208180.0 201160.0 226760.0 243990.0 210840.0 171670.0 260530.0 215870.0 True False 177737.89905543654 209715.40090808898 237489.93446700182 226626.8353746007 255636.54188817917 227123.54559068094 200640.86371298414 184480.8871225966 196325.87242314187 202092.99178439486 0.8794857134138435 1.0377173352543871 1.175151757466041 1.1213987846564222 1.264945110817637 1.1238566146469353 0.9928145550293997 0.9128514823483442 0.9714630412943478 1.0 17.6246597669946 2.1350038666264797 4.451561151334719 0.952339288591053 1.1092170485512387 0.3101276497126698 0.09555330169090012 0.2509847815235475 8.704611995521242 0.039806601530709744 0.028806613459145633 136.45952858493868 -2.1350038666264797 0.15687775996018571 DFTNEAPPAPLPDASASPLS(ph)PHR ddPTM_BT-474_Trastuzumab_2h_R1 3 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;Q6WCQ1-2;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 DFTNEAPPAPLPDAS(0.12)AS(0.313)PLS(0.567)PHR;DFTNEAPPAPLPDAS(0.004)AS(0.137)PLS(0.86)PHR;DFTNEAPPAPLPDAS(0.003)AS(0.203)PLS(0.793)PHR 174.89 1.3874e-12 568520000.0 854990.0 782160.0 771800.0 762410.0 771150.0 899580.0 834610.0 736040.0 985200.0 839070.0 True False 850386.8288383181 808193.7227742953 880462.7313941407 858931.0278283407 869351.3815358514 837394.1519835424 794236.7257801812 790967.0423353895 742410.6610036453 785519.8342360315 1.0825784299455328 1.0288648198938422 1.1208663270106316 1.0934555569353717 1.1067211082981137 1.0660382023300048 1.0110969719213105 1.0069345264905447 0.9451201976659027 1.0 19.583288178209244 2.111185917748817 1.729584664913181 0.9814669460839762 1.0861862433960614 0.7443989930094638 0.027043959188103307 0.18942777772611946 1.0875552391469636 0.01593123396339076 0.008762389028792401 129.1772151860569 -2.111185917748817 0.10471929731208518 DFTNEAPPAPLPDASASPLS(ph)PHRR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;Q6WCQ1-2;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 DFTNEAPPAPLPDASAS(0.001)PLS(0.999)PHRR;DFTNEAPPAPLPDASASPLS(1)PHRR 260.06 3.2744999999999997e-44 1847940000.0 359200.0 424230.0 352920.0 376630.0 362890.0 416160.0 366960.0 294660.0 431800.0 393470.0 True False 357266.1071108717 438350.23909754964 402608.06836436933 424311.31938325614 409101.8904824543 387391.83873526624 349208.74287666805 316649.025453162 325388.6758235625 368358.407733385 0.9698872066182298 1.190010136580958 1.0929791743908666 1.1518980169182658 1.1106082605790804 1.0516709557927548 0.948013498661398 0.8596220930630967 0.8833480354792833 1.0 18.490750646766408 2.2724891883627496 2.436482669230665 0.8989466042429415 1.108967813282883 0.6421082880303324 0.06359123503849051 0.1531324767343222 1.8644632621687187 0.025713024041499843 0.018460200020244965 187.27904598529057 -2.2724891883627496 0.2100212090399416 DFTPAELR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFTPAELR 8 0 O00264;O00264-2 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 0 ; 102.3 0.011614 693630000.0 890470.0 1233390.0 1229570.0 1033180.0 1167460.0 1327920.0 1153820.0 1013150.0 1321000.0 1134680.0 False True 885675.8084605173 1274442.6405500013 1402682.7683859707 1163980.482065668 1316129.1109224474 1236124.0159874451 1098005.318579564 1088756.3976714558 995457.2504931133 1062263.7509515772 0.8337626203164024 1.1997421915304498 1.3204656255373919 1.095754685239869 1.2389852423594963 1.1636695828885468 1.0336466038645953 1.0249398011521587 0.9371093098125408 1.0 20.01871058871201 2.094803335932913 2.7627486564996437 0.9930969078971511 1.1554468206082962 0.24874616111280967 0.12168080530873754 0.3794323632043118 5.723497502443169 0.056265595577683396 0.035592902189597465 124.3951178645729 -2.094803335932913 0.16234991271114507 DFTPELGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFTPELGR 8 0 A0A3B3IU42;O14893-3;O14893-2;O14893 A0A3B3IU42 GEMIN2 Gem-associated protein 2 0 77.058 0.079558 95106000.0 82195.0 114630.0 83522.0 85842.0 84054.0 84386.0 89052.0 77202.0 99352.0 92089.0 False True 81752.47125272296 118445.39025470174 95281.17161376175 96709.58839842153 94757.77867290992 78552.59444327715 84744.21454832402 82963.20526381274 74868.03084859336 86211.80117864057 0.9482747157007266 1.3738883614004251 1.1051987119063713 1.12176740395469 1.0991276991946974 0.911158256402825 0.9829769635913818 0.9623184312308198 0.8684197502550535 1.0 16.395597746967915 2.8928448973717895 3.134983119395349 0.9472488216827105 1.1504423779278625 0.4443213226032605 0.10307064244557547 0.224501246021213 4.203673978098172 0.031241355246408795 0.03397998196410964 781.3487062205371 -2.8928448973717895 0.203193556245152 DFTPVCTTELGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DFTPVCTTELGR 12 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;;;; 145.46 0.00014166 3114250000.0 1068905.0 1188772.0 1003031.0 1090542.0 953249.0 1143484.0 1169436.0 1132506.0 1329497.0 1188889.0 False True 1063150.1342465098 1228339.5573921513 1144249.0462982585 1228604.5053842107 1074639.6098005162 1064437.6425518016 1112865.9130006495 1217019.3484689433 1001860.27869708 1113013.086160919 0.9552000308582176 1.1036164557858203 1.0280643242435548 1.1038545014973702 0.9655228884210488 0.9563568081875236 0.9998677705032408 1.0934456778641928 0.9001334226471364 1.0 20.086039124473476 3.2232613842923796 24.998844432453296 0.9970796577273718 1.050277639734696 0.1864059579032622 0.060501378787163704 461.42463366227094 753963.0498507333 0.017674097353895586 0.02120136961725454 1672.096678922358 -3.2232613842923796 0.053197982007324174 DFTQPFIHCTDDSPDPCIEYELVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DFTQPFIHCTDDSPDPCIEYELVLR 25 0 O75794;X6RF82;X6RA30 O75794 CDC123 Cell division cycle protein 123 homolog 0 175.9 1.1462e-12 53831000.0 34222.0 33482.0 36912.0 40870.0 40720.0 47029.0 39308.0 40821.0 63826.0 49489.0 False True 34037.75255442165 34596.4281297036 42108.88875514447 46044.13780950447 45905.45063365082 43777.99592435806 37406.52186885779 43867.270304837904 48096.937524582485 46330.56965033547 0.7346715745416091 0.7467300400320697 0.9088791498344888 0.9938176490599457 0.9908242221087914 0.9449051944484579 0.807383163021112 0.9468320945740901 1.0381253217384998 1.0 15.499676800462867 4.197069503916977 3.73761456394703 0.9493465282469881 0.7348287804231963 0.682668787969172 0.05869444076852488 0.12880406504988123 3.702566489920168 0.01578024126836693 0.041296133735339684 15742.347827689277 -4.197069503916977 -0.21451774782379174 DFTSEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DFTSEPR 7 0 P41091;Q2VIR3;Q2VIR3-2 P41091 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein 0 ;; 111.28 0.036031 0.0 1802920.0 2271590.0 2094930.0 2091520.0 2058650.0 2266750.0 2143580.0 1968470.0 2478430.0 2155030.0 False True 1793213.279043245 2347198.4999448457 2389877.9345420133 2356306.2175516244 2320806.874925472 2110054.90785555 2039886.846129191 2115367.2270881208 1867654.1357605197 2017494.1403859935 0.8888319639432318 1.1634227098651062 1.1845773857289985 1.1679370811460241 1.1503413211804658 1.0458790762345647 1.0110992668057581 1.048512203700082 0.9257296456896742 1.0 20.94413305266696 2.5342783609557635 3.5940326773751106 1.0069069049406285 1.1208468954232156 0.28415741872880085 0.0844629920847694 0.3185340237576422 8.220290824329311 0.029461213880969145 0.026552592584670145 342.1987044250505 -2.5342783609557635 0.11393999048258707 DFTVSALHGDMDQK ddPTM_BT-474_Trastuzumab_2h_R1 8 DFTVSALHGDMDQK 14 0 Q14240;Q14240-2;E7EQG2 Q14240 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ;;;;;;; 271.64 5.816099999999999e-33 6727230000.0 8763330.0 8471630.0 7511530.0 7261130.0 7476780.0 10183190.0 9960070.0 9015910.0 13539820.0 9873900.0 False True 8716149.204977503 8753603.083341526 8569088.132610809 8180388.313499577 8428903.61465295 9479250.043950833 9478263.36293768 9688722.986063324 10203112.785292702 9243739.248528903 0.9429246077408162 0.9469764180912632 0.9270153454376743 0.8849652822910866 0.9118499979317752 1.0254778709232208 1.025371130459581 1.0481389322622052 1.1037863045429888 1.0 23.140045133526083 2.6637809492213633 4.046813740807888 1.045111934354479 0.9220351090744182 0.802708165582992 0.029266420481391706 0.10114373894321785 3.185089881640221 0.010113474364032692 0.00960254785859429 461.08495246189955 -2.6637809492213633 -0.12307682528006081 DFTVSAMHGDMDQK ddPTM_BT-474_Trastuzumab_2h_R1 23 DFTVSAMHGDMDQK 14 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QL52 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 ;;;;;;;;;;;;;;;;;;;;;; 281.51 2.5156999999999993e-33 46594200000.0 27785384.0 28235225.0 26855691.0 26464015.0 27458307.0 33448010.0 33618850.0 31428650.0 43812240.0 33777520.0 False True 27635790.579790372 29175017.39557103 30636738.858949233 29814356.585583434 30954959.63831362 31135827.79684638 31992577.789021347 33774015.45445096 33015300.50593821 31621809.75521022 0.8739471520992538 0.9226232660755275 0.9688483706692758 0.9428415646157323 0.978911702965175 0.9846314312139024 1.0117250731909813 1.068060800944074 1.044067394039596 1.0 24.914416601488856 3.6309381873258126 0.4867709740969279 1.0457314202706571 0.8634907443446804 0.7915736814286115 0.02472518084955725 0.7764563872355567 0.2961704165750709 0.020437040636966688 0.07347901583460315 4275.020359087792 -3.6309381873258126 -0.1822406759259767 DFVAEPMGEKPVGSLAGIGEVLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFVAEPMGEKPVGSLAGIGEVLGK 24 1 O75531 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed 0 ; 213.47 7.1799e-26 1981600000.0 1565760.0 1280520.0 1162220.0 1101330.0 1057000.0 1569200.0 1514300.0 1470930.0 2149950.0 1556800.0 False True 1557330.1221322883 1323141.334109314 1325850.4738026673 1240758.2650780908 1191602.6846701612 1460724.8974994735 1441047.523812236 1580698.2658311967 1620123.6303540252 1457443.691156465 1.0685353620053508 0.9078507404011035 0.9097095701519831 0.8513250100891123 0.8175977513921228 1.0022513434741378 0.9887500508982142 1.084569013144467 1.1116200510418865 1.0 20.47500871480236 2.2239001692895473 1.9663352674868804 1.068273148689673 0.9096684770762875 0.4493797004992728 0.07032262426836487 0.2873681425894181 2.232531307081619 0.03537626120482307 0.02270054116460064 167.4557903323668 -2.2239001692895473 -0.15860467161338554 DFVDDDDDDDLER ddPTM_BT-474_Trastuzumab_2h_R1 2 DFVDDDDDDDLER 13 0 G3V4K3;Q9H9C1;Q9H9C1-2 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 0 ; 294.24 2.9015e-40 2185080000.0 1220150.0 1295560.0 1195700.0 1227420.0 1189150.0 1415630.0 1422810.0 1241240.0 1536490.0 1391910.0 False True 1213580.8479714082 1338681.9314174412 1364044.1667892882 1382811.2461497919 1340581.2038557448 1317770.8301345767 1353983.2446379769 1333867.6316890086 1157842.6274111744 1303077.1121258955 0.9313192877676446 1.0273236472041616 1.0467869891168056 1.0611891140454572 1.0287811760185577 1.0112761692089804 1.0390660936627387 1.0236290847844607 0.8885449806744136 1.0 20.313491030045157 1.2697801362118974 24.3899048667861 0.9442725553902748 1.0242973744983184 0.35377423828673216 0.04140072000180509 127.49189950031322 99601.80313142909 0.026282944250041095 0.00959486115130437 18.61144684169526 -1.2697801362118974 0.0800248191080436 DFVDHIDLVDPVDGVVLVDPEYLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DFVDHIDLVDPVDGVVLVDPEYLK 24 0 P49407-2;P49407;E9PM35 P49407-2 ARRB1 Beta-arrestin-1 0 ;;; 256.33 7.288599999999997e-44 921924000.0 1004978.0 869885.0 791836.0 736307.0 716284.0 997197.0 1002161.0 887094.0 1284610.0 937671.0 False True 999567.3101115534 898838.5963684134 903319.6260381071 829523.3907047416 807498.52165211 928263.1185392434 953682.6438032052 953293.4588520585 968035.0783920955 877828.0339994683 1.138682374448022 1.0239347133552104 1.0290393916021303 0.944972544252607 0.9198823577928694 1.0574544017579253 1.0864116966715407 1.0859683467942605 1.102761635421502 1.0 19.743578818758532 2.4939730888373925 24.695767629941695 1.076713627286763 1.0072408757925695 0.16923372472610543 0.060235176247060054 967.3996944350124 1417690.8162985572 0.020491829489959208 0.0188623762056089 311.8696327334202 -2.4939730888373925 -0.06947275149419352 DFVEHSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 DFVEHSAR 8 0 Q16822;H0YM31;Q16822-2 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 ;; 161.92 0.00041492 359263000.0 651288.0 767023.0 783765.0 695983.0 825619.0 1136350.0 634060.0 557038.0 916840.0 781656.0 False True 647781.5377728995 792552.8968798055 894112.2993924964 784094.3764392547 930756.6858227937 1057796.7991801728 603388.0954555811 598607.0041416498 690897.0670265754 731770.04487063 0.8852255463496338 1.0830627769409737 1.221848729200943 1.0715037899342752 1.271925097709271 1.445531703019056 0.8245597092762308 0.8180261112594159 0.9441450519455459 1.0 19.48103083435936 2.199655851004867 24.999997045169586 0.8726809922227 1.162983721049827 0.44036298319281186 0.14618227423222113 143.665467379716 92317.8536210499 0.05676094578595858 0.041921417904954496 158.36377693151613 -2.199655851004867 0.29030272882712704 DFVNYLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFVNYLVR 8 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 155.82 0.00093732 1671890000.0 1247960.0 1656950.0 1857850.0 1346940.0 940390.0 1135040.0 1419750.0 978200.0 2027800.0 1262720.0 False True 1241241.1220213897 1712100.5791025728 2119419.131278316 1517462.46589513 1060143.0923717802 1056577.3563967638 1351071.268528311 1051198.2511989516 1528075.8611278834 1182132.128531018 1.050002019286815 1.4483157489595706 1.7928783763892975 1.283665699688589 0.8968059210852952 0.8937895611632893 1.1429105392873689 0.8892392193969282 1.2926438798569446 1.0 20.172959865857443 3.422247225286908 5.588683376864747 1.010938933317664 1.4490464027433585 0.45650838643490954 0.20419447600532886 0.15885434648509836 10.502108102321124 0.05663369790599266 0.0778520030277292 2643.913395914177 -3.422247225286908 0.43810746942569456 DFVSEQLTSLLVNGVQLPALGENKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFVSEQLTSLLVNGVQLPALGENKK 25 1 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ; 113.23 0.0033904000000000004 130054000.0 76746.0 79871.0 74201.0 63203.0 72109.0 87418.0 90442.0 69432.0 109814.0 96652.0 False True 76332.80806328215 82529.45795196088 84647.8558333462 71204.49331965053 81291.6537264718 81374.9994198374 86066.97493800856 74613.36840855214 82751.81113221103 90483.58661205959 0.8436094425672177 0.9120931324904114 0.9355050899592037 0.7869327022251398 0.8984132567048057 0.8993343706491825 0.9511888084964307 0.824606662957011 0.9145505193886947 1.0 16.465368495933756 3.0307180284838564 24.999455381556547 0.9027545439528342 0.8729603595172496 0.11208985914441005 0.05636128281353673 647.468957128826 526930.195773338 0.016214267116664814 0.0193796194662582 1073.2923366307473 -3.0307180284838564 -0.02979418443558457 DFVTEALQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DFVTEALQSR 10 0 Q15126 Q15126 PMVK Phosphomevalonate kinase 0 ; 142.43 8.3208e-05 241800000.0 186802.0 223590.0 204420.0 200322.0 201147.0 214780.0 203646.0 190150.0 237120.0 215670.0 False True 185796.27878765328 231032.05798699064 233200.5591495077 225682.7446605228 226761.87815832405 199932.764137737 193794.8649767328 204339.95856213532 178684.95324521334 201905.75595562323 0.9202128879797233 1.1442569177560695 1.1549970829002159 1.1177628076642128 1.1231075463156381 0.9902281546727183 0.9598283320824537 1.0120561327981512 0.8849918735575147 1.0 17.62332251423084 2.6628610691338572 5.017879521216654 0.9710549547820224 1.0997922206775952 0.4368035449329387 0.06953572395535047 0.20648234090534617 9.534970672684 0.022495631727823994 0.021264487353177302 460.1093609863364 -2.6628610691338572 0.12873726589557277 DFWEQEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DFWEQEVR 8 0 Q16822;Q16822-3;H0YML5 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 ;;; 145.16 0.0013351 789120000.0 558867.0 662633.0 722730.0 592912.0 711926.0 1026170.0 565992.0 482142.0 789013.0 683398.0 False True 555858.1221679611 684688.3388348931 824484.1019182259 667974.5984073627 802585.5561840009 955233.2832443506 538612.8046605921 518121.8843074688 594571.3183825302 639782.9545535357 0.8688229628684927 1.070188466200532 1.2886934483798205 1.044064387231917 1.2544653627792803 1.4930583511887212 0.8418680129364436 0.8098400881421317 0.9293328528851542 1.0 19.28722303033418 2.152358610784185 24.999999612978844 0.8706129900609995 1.1689309642367942 0.40090638065582196 0.16335103615291377 22.5087861256217 6524.246045221187 0.06270352860672575 0.04630954047419854 142.02297665892118 -2.152358610784185 0.29831797417579475 DFYDKIEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DFYDKIEAK 9 1 Q14008;Q14008-3;Q14008-2 Q14008 CKAP5 Cytoskeleton-associated protein 5 0 89.54799999999999 0.010974 406530000.0 422730.0 359940.0 320340.0 317820.0 326920.0 439400.0 456450.0 399830.0 647630.0 465450.0 False True 420454.06864971784 371920.3853116755 365441.0875548053 358055.9794131812 368551.32419334835 409025.3122363417 434369.7696916688 429667.3448956012 488030.2642973917 435744.5825082068 0.9649094573466075 0.8535284206423169 0.8386589351295551 0.8217106850810649 0.8457966868386874 0.9386813483301039 0.9968449112812273 0.9860532113156195 1.1199915819680906 1.0 18.733123202271123 2.289359933973979 1.5435483565615518 1.0352924249086735 0.8601174121540648 0.7008530979950602 0.049669851696608175 0.22110614049456404 1.050951074581647 0.027219462954789282 0.017243938772268486 194.69730227265515 -2.289359933973979 -0.17517501275460867 DFYELEPEKFQNK ddPTM_BT-474_Trastuzumab_2h_R1 3 DFYELEPEKFQNK 13 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;; 213.82 2.578e-09 1806360000.0 1787260.0 1879330.0 1676150.0 1579830.0 1514540.0 2271100.0 2117330.0 1973700.0 3286750.0 2317790.0 False True 1777637.590743255 1941882.362971025 1912137.3506430255 1779836.3160163786 1707407.6916181105 2114104.2025943478 2014906.658913926 2120987.5162455277 2476774.502693595 2169866.6578401453 0.8192381703826402 0.8949316567239884 0.881223435428212 0.8202514701009336 0.7868721727433888 0.9743014368904572 0.928585473966191 0.9774736657582124 1.1414408778274612 1.0 21.049174958545336 1.968131939867886 1.132529987223687 1.0575737855941596 0.8494342289544771 0.6836456530048252 0.05671037963244459 0.28810540540043017 0.6809445510495095 0.044045166004850304 0.020030877823511265 92.92486522185727 -1.968131939867886 -0.20813955663968253 DFYFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFYFGK 6 0 Q15691;Q15555-4;Q15555-5;Q15555-3;Q15555 Q15691;Q15555-4 MAPRE1;MAPRE2 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 2 0 ; 106.29 0.075031 4076000000.0 3939000.0 4052000.0 3756900.0 3653200.0 3524800.0 4256700.0 4272300.0 3931200.0 5232300.0 4156100.0 False True 3917792.86166404 4186868.3705142774 4285838.864439809 4115694.745428969 3973662.386873588 3962444.348193989 4065632.5272290953 4224566.106229118 3942869.774227948 3890854.1397837773 1.0069236010686742 1.0760794982530366 1.101516199391114 1.0577869530872948 1.021282793986827 1.018399612485651 1.0449203134237848 1.0857683054816045 1.013368692984996 1.0 21.89165546694286 3.458523613059696 20.331308088818904 1.0387703256855156 1.0657450126163297 0.1466132661291304 0.031562843873717356 57.97765038178468 63380.0189291286 0.009163706389634962 0.012414613608661947 2874.2438651076486 -3.458523613059696 0.026974686930814062 DFYFSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DFYFSVK 7 0 Q9NY12-2;Q9NY12 Q9NY12-2 GAR1 H/ACA ribonucleoprotein complex subunit 1 0 ; 126.67 0.0091423 163580000.0 323940.0 421110.0 395100.0 356670.0 322000.0 388120.0 359980.0 380510.0 554180.0 413960.0 False True 322195.9430331175 435126.391783629 450726.645729236 401824.38542980095 363004.7913564724 361290.17793620663 342566.39214285737 408905.58839062933 417609.7646315465 387540.7183910135 0.8313860395645816 1.1227888351711302 1.1630433251002812 1.036857203284574 0.9366881314138833 0.9322637874962055 0.8839494171480098 1.0551293554089445 1.0775893856144285 1.0 18.56398837484844 4.760992064459516 23.967240517155698 1.0193390634941017 0.8313856836203574 0.3218665860709039 0.08333747200314806 4631.169212098353 4948107.222786356 0.022041225143828103 1.0502541864447072 57675.592466335715 -4.760992064459516 -0.1879533798737444 DFYLATS(ph)PPDSFLDDHHLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DFYLATSPPDSFLDDHHLTR 20 0 Q13131-2;Q13131 Q13131-2 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 DFYLAT(0.038)S(0.958)PPDS(0.003)FLDDHHLTR;DFYLAT(0.007)S(0.991)PPDS(0.002)FLDDHHLTR;DFYLAT(0.01)S(0.99)PPDSFLDDHHLTR 120.63 5.6368e-05 498448000.0 235876.0 244298.0 256267.0 259662.0 244406.0 287651.0 280964.0 183933.0 273598.0 253535.0 True False 234606.06982428744 252429.31124874024 292347.166087305 292535.182576255 275529.6553921434 267766.3634276195 267372.69793328986 197659.0144528491 206173.43892537084 237354.17923776575 0.9884219042516819 1.0635132360398558 1.2316916728668632 1.2324838075979803 1.1608375983813455 1.128129971368184 1.1264714141201346 0.8327597815534874 0.8686320147699607 1.0 17.85668192682694 1.7695014230430242 8.103701754362225 0.8891516009863393 1.1391824106963342 0.644093840213924 0.078997504414102 0.11240642300032828 21.7694879748402 0.03914153475046079 0.021681928132345284 58.81680413769592 -1.7695014230430242 0.2500308097099949 DFYLATS(ph)PPDSFLDDHHLTRPHPER ddPTM_BT-474_Trastuzumab_2h_R1 7 DFYLATSPPDSFLDDHHLTRPHPER 25 1 Q13131-2;Q13131 Q13131-2 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 DFYLAT(0.004)S(0.995)PPDSFLDDHHLTRPHPER;DFYLAT(0.003)S(0.997)PPDSFLDDHHLTRPHPER;DFYLAT(0.005)S(0.995)PPDSFLDDHHLTRPHPER;DFYLAT(0.014)S(0.986)PPDSFLDDHHLTRPHPER;DFYLAT(0.197)S(0.803)PPDSFLDDHHLTRPHPER;DFYLAT(0.004)S(0.996)PPDSFLDDHHLTRPHPER;DFYLAT(0.004)S(0.996)PPDSFLDDHHLTRPHPER 188.41 6.046e-18 9113490000.0 1440372.0 2041007.0 2004950.0 2169764.0 2014467.0 2216676.0 1963804.0 967023.0 2144401.0 1887755.0 True False 1432617.1971923744 2108940.6841802155 2287229.532662193 2444455.8999290834 2270997.431768634 2063442.405614031 1868807.2980602025 1039187.1667032966 1615942.1070512352 1767276.8597116317 0.8106354074177919 1.193327843677155 1.294211215460266 1.3831765444651087 1.2850264061847076 1.167582993165386 1.0574502165807442 0.588016054752656 0.9143683957446883 1.0 20.753096637988282 1.9637167723053635 5.414306748052166 0.792868982483013 1.2012745178517175 0.447739645660596 0.17399245212296724 0.15539529722801354 12.006533088293814 0.07700484869423788 0.04811311409019366 91.98494908585353 -1.9637167723053635 0.4084055353687045 DGAAYFYGPIFIHPEETEHEPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGAAYFYGPIFIHPEETEHEPTK 23 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9 Q86U86-8 PBRM1 Protein polybromo-1 0 169.84 4.6408e-12 103100000.0 166750.0 151680.0 144210.0 153580.0 108780.0 189570.0 177890.0 128940.0 206520.0 160910.0 False True 165852.23652766686 156728.5771075036 164513.51450420948 173023.21225308775 122632.48821042576 176465.47209978002 169284.78109420743 138562.15754405348 155625.9132262206 150640.58603801817 1.1009797617609483 1.0404140161002093 1.092092900267197 1.148582973578055 0.8140733612087527 1.1714337864779965 1.1237660815491244 0.9198195598434782 1.033094183442331 1.0 17.20075099203809 3.219065475179438 0.29337557593696656 0.9866397870651131 1.1139888087565097 0.06126934385922744 0.10136378767334484 9.934573036082934 1.4029184379401616 0.13702503479019199 0.4349754197168394 1656.019609763913 -3.219065475179438 0.1273490216913966 DGADFAK ddPTM_BT-474_Trastuzumab_2h_R1 5 DGADFAK 7 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;A8MVZ9;C9J8F3;J3KSV6;J3QKP5;K7EKH5 H3BPS8;P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C 0 ;;;; 124.59 0.0096111 8019170000.0 6109000.0 5360860.0 5235320.0 4561030.0 4388410.0 6428100.0 6848590.0 5519730.0 8140350.0 6370260.0 False True 6076109.822773709 5539292.984391699 5972407.549782802 5138455.93034706 4947248.001356082 5983740.577119782 6517297.537545561 5931640.281221015 6134269.8176015215 5963704.552946022 1.0188482291216387 0.9288342397269383 1.0014593272955619 0.8616214778461324 0.829559539282036 1.003359660760502 1.0928270305285444 0.9946234305471812 1.0286005557688538 1.0 22.507777356362432 2.4956705259906644 24.7134927321242 1.0298319941851017 0.9272901263590011 0.4094935257739023 0.05818029026919438 658.7367296841012 877645.7171673541 0.01960132902728372 0.018180238243741875 313.09095837814164 -2.4956705259906644 -0.10254186782610064 DGAGFLINLIDSPGHVDFSSEVTAALR ddPTM_BT-474_Trastuzumab_2h_R1 9 DGAGFLINLIDSPGHVDFSSEVTAALR 27 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;;;;; 289.04 1.8970999999999997e-70 3448673000.0 623072.9 709983.2 744992.0 757500.4 744341.2 811300.2 777001.4 700600.4 794784.6 769811.9 False True 619718.344736307 733614.5616180932 849880.3980134522 853399.8729717348 839128.6397640575 755216.926769246 739414.8738484047 752882.7594247469 598920.5848980086 720681.8454728741 0.8599055861184902 1.0179451116001588 1.1792726615109954 1.1841561964305873 1.164353792225007 1.0479200100756134 1.025993478943873 1.0446811781844514 0.8310471377352762 1.0 19.45900297764852 1.3995591105736895 4.932198388280255 0.9161308234317832 1.0747905152265722 0.2664740439442751 0.09910713728066725 0.2748479621242591 10.50067449022996 0.07320614812278482 0.026330114446464336 25.093376949648896 -1.3995591105736895 0.158659691794789 DGAGLGLSGGS(ph)PGASTPVLLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGAGLGLSGGSPGASTPVLLTR 22 0 Q8N612;Q8N612-2 Q8N612 FAM160A2 FTS and Hook-interacting protein 1 DGAGLGLS(0.003)GGS(0.997)PGASTPVLLTR 135.04 6.957000000000001e-06 63621000.0 48237.0 64886.0 60722.0 81637.0 63934.0 62539.0 65175.0 52499.0 52015.0 71475.0 True False 47977.29735163454 67045.69128558472 69271.12979491458 91972.23582956978 72075.61593349294 58215.826130970876 62022.236257321856 56416.741964520355 39196.6002152909 66913.40430717384 0.7170057755750868 1.0019769877168945 1.0352354735520155 1.3744964373260764 1.0771476459727165 0.870017401352415 0.9269030159129477 0.8431306484651816 0.5857809899396883 1.0 16.030007624652345 2.6706375593806047 4.507325353160245 0.8395243090374513 1.0571476460178695 0.23013781559152258 0.17845425268744267 0.33364672162004433 13.333515514441247 0.06128661243792532 0.05820585379262285 468.42229697782705 -2.6706375593806047 0.21762333698041814 DGAHVVISSR ddPTM_BT-474_Trastuzumab_2h_R1 7 DGAHVVISSR 10 0 Q13268;C9JZP6;Q13268-2 Q13268 DHRS2 Dehydrogenase/reductase SDR family member 2, mitochondrial 0 ;;;;;; 181.53 1.8774e-06 15175890000.0 2433630.0 2948620.0 3139500.0 2783930.0 3470790.0 5051760.0 2830480.0 2228140.0 3479020.0 3210430.0 False True 2420527.60648171 3046763.0342215714 3581514.310976809 3136375.252557228 3912774.5335159367 4702543.721763913 2693558.8689163686 2394415.1210656655 2621662.137479598 3005537.60881259 0.8053559534189285 1.0137164896183974 1.191638494382964 1.0435321931627162 1.301855123037962 1.5646264774646308 0.8961986903835563 0.7966678287588079 0.8722772690624719 1.0 21.519191642189544 2.0352536010033817 24.999983136547776 0.8618994723994472 1.1572393317265597 0.30594907262400073 0.1920536303362166 204.3549670519402 144916.881341745 0.07594915012096917 0.056091971028396886 108.4560044852793 -2.0352536010033817 0.2953398593271125 DGALHMIGSLAEILLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGALHMIGSLAEILLK 16 0 O95373 O95373 IPO7 Importin-7 0 135.45 1.7284000000000006e-05 56036000.0 118990.0 122360.0 106770.0 117330.0 108780.0 134820.0 126970.0 132670.0 187840.0 156100.0 False True 118349.37106103176 126432.67863181801 121802.2879385233 132183.96596988422 122632.48821042576 125500.21073214304 120827.9760274976 142570.50908460937 141549.348927045 146137.5643560661 0.809849073251775 0.8651620764922776 0.8334769261772449 0.9045173741079756 0.8391578766950711 0.8587813221408297 0.8268098387974951 0.9755911131598883 0.9686034494331529 1.0 17.156967541999155 1.6844735485077125 5.504382837922443 0.9806112461004866 0.8506378983017309 0.8510827014589587 0.02547248227423446 0.05075637837321204 3.461756917216639 0.012818067873477236 0.006346921018847676 48.35858097351443 -1.6844735485077125 -0.1299733477987557 DGAPWCGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGAPWCGR 8 0 Q9NZU5;B4DEY6;Q9NZU5-2 Q9NZU5 LMCD1 LIM and cysteine-rich domains protein 1 0 ;;; 120.52 0.0034564 410599000.0 715860.0 779620.0 664940.0 663060.0 673830.0 805550.0 798840.0 694180.0 893600.0 771900.0 False True 712005.8892995231 805569.1804097572 758557.7722379107 747003.3280149265 759638.2563966832 749864.2245607309 760197.0573348523 745983.2365746163 673384.2536265297 722636.6811431622 0.9852888842747065 1.1147637553291667 1.0497083694089868 1.033719083887657 1.0512035663550694 1.0376780533400223 1.0519768469713884 1.0323074596691126 0.9318434438745643 1.0 19.462910962476204 1.373784378806551 5.558533746069475 0.9669739910940796 1.047719104110609 0.47411101711885917 0.033314628694142756 0.15753118295000715 6.640070687544497 0.02144314107127362 0.007680737667262795 23.647453426835213 -1.373784378806551 0.08074511301652953 DGASS(ph)SPESASR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGASSSPESASR 12 0 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 DGAS(0.113)S(0.443)S(0.443)PESASR;DGAS(0.002)S(0.722)S(0.276)PESASR 142.12 6.4083e-05 170473000.0 361520.0 528003.0 445804.0 535513.0 499272.0 418999.0 463135.0 374617.0 355093.0 454118.0 True False 359573.61648864794 545577.2606704468 508569.3282021681 603308.8908926146 562851.3297830095 390034.5853475533 440731.3907024895 402572.82280658145 267585.0881524228 425135.80045001995 0.8457853140291354 1.2833011477578122 1.1962514746201827 1.4190968868159133 1.323933033132503 0.9174352875826716 1.0366837848893484 0.9469275990882093 0.6294108561762509 1.0 18.697564227078853 2.7270933739961745 24.193506916867573 0.9174287043002016 1.2279862799960883 0.4384901243899978 0.17341791372364973 462.09819861447846 974929.3650247061 0.05627129458446578 0.05350501501394836 533.4495756561408 -2.7270933739961745 0.3105575756958867 DGASSS(ph)PESASR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGASSSPESASR 12 0 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 DGAS(0.001)S(0.497)S(0.502)PESASR;DGASS(0.404)S(0.596)PESASR;DGASS(0.018)S(0.982)PESASR 194.98 8.7721e-07 518080000.0 439690.0 526270.0 538340.0 508620.0 486050.0 464120.0 498540.0 445490.0 502320.0 495490.0 True False 437322.7578941509 543786.5788130676 614133.5926648377 573011.239850017 547945.5864559426 432036.4768209628 474423.71559225564 478734.7259523835 378529.96674314956 463867.40398966905 0.9427753580717017 1.172288835421552 1.323942116610796 1.2352910226534881 1.1812547761345742 0.9313792542978183 1.0227571748128732 1.0320508012307879 0.8160305369324462 1.0 18.823352945856975 2.7462878349062496 23.913411045152404 0.9733842242117757 1.1832321495046698 0.490612712289475 0.10656688836545918 292.4803914282599 905138.4131928495 0.033880076115705156 0.03528823315764492 557.5551541914579 -2.7462878349062496 0.2098479252928941 DGAWGAFR ddPTM_BT-474_Trastuzumab_2h_R1 7 DGAWGAFR 8 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;; 164.24 0.00077066 5841493000.0 3374183.0 4230100.0 4931160.0 3403774.0 2239850.0 3236130.0 4100870.0 2745531.0 6237830.0 3612064.0 False True 3356016.773634976 4370896.321350557 5625424.465588915 3834691.4394031847 2525081.620868931 3012423.950130619 3902495.251255287 2950416.464743929 4700600.379139635 3381538.9830764276 0.9924524869980258 1.292576055821199 1.66356930786321 1.1340077575904484 0.7467255688922101 0.8908440698767287 1.1540589272476487 0.8725070092374698 1.3900772407666178 1.0 21.68924855486583 3.482745060650464 24.965880550576774 0.9936071434618441 1.3279955703039659 0.274283433773548 0.222621567094452 285.1892157577058 1266047.967076937 0.06042090561984961 0.08438438521436017 3039.10049055924 -3.482745060650464 0.3343884268421218 DGDDVIIIGVFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGDDVIIIGVFK 12 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;; 198.87 4.1479e-07 319135000.0 1157529.0 989706.0 824009.0 752001.0 789303.0 1086353.0 1042573.0 1049241.0 1441180.0 983755.0 False True 1151296.9924775618 1022647.7659200884 940022.3047853775 847204.2494956006 889816.0584845906 1011255.9741098933 992139.7609743723 1127540.6913578403 1086020.4998226063 920970.9136649702 1.2500905027456484 1.110401806122735 1.0206862028297863 0.9199033725442882 0.9661717273389232 1.0980324775791637 1.0772758903168702 1.2242956586661713 1.1792125936972617 1.0 19.812796067915272 1.9300957764266793 7.024062311053542 1.1580772287836796 1.05349812040732 0.081495700959487 0.1001253194991658 0.4807354518770442 41.37275843092103 0.04512044679144233 0.02804638427076915 85.13257632433186 -1.9300957764266793 -0.10457910837635964 DGDES(ph)SPILTSFELVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGDESSPILTSFELVK 16 0 A8MYT4;A0A1W2PS05;Q8NEB9 A8MYT4 PIK3C3 Phosphatidylinositol 3-kinase;Phosphatidylinositol 3-kinase catalytic subunit type 3 1 DGDES(0.749)S(0.25)PILTSFELVK 170.35 5.5643e-09 34848000.0 101460.0 85833.0 73000.0 69957.0 68750.0 84386.0 83570.0 77429.0 112240.0 82543.0 True False 100913.7506332657 88689.89951785581 83277.76547262534 78813.54902714714 77504.90498682452 78552.59444327715 79527.3998315978 83207.14515649529 84579.95593894554 77275.03507138228 1.3059036536191453 1.1477173635175852 1.0776800734635459 1.019909585991694 1.0029746982997794 1.0165326275260145 1.0291473793332466 1.0767661907837798 1.0945314468096377 1.0 16.23771478340225 4.68444770449207 1.510574499899596 1.0378123437737587 1.391722490631457 0.8894360964802676 0.029426760927408993 0.3315056109101802 0.7631519391727173 0.00881975032034839 0.1699514390116292 48355.70333451605 -4.68444770449207 0.35391014685769817 DGDESS(ph)PILTSFELVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGDESSPILTSFELVK 16 0 A8MYT4;A0A1W2PS05;Q8NEB9 A8MYT4 PIK3C3 Phosphatidylinositol 3-kinase;Phosphatidylinositol 3-kinase catalytic subunit type 3 1 DGDES(0.148)S(0.852)PILTSFELVK;DGDES(0.119)S(0.881)PILTSFELVK 98.676 0.0027827 61047000.0 249590.0 201045.0 185980.0 156296.0 178111.0 239128.0 197336.0 210310.0 295560.0 213539.0 True False 248246.2351720558 207736.66129073093 212164.36743286104 176083.05757461 200792.38010339334 222597.64420676386 187790.1037832736 226004.40013254128 222723.19830109336 199910.75820006445 1.241785271624145 1.039146983189542 1.061295396721639 0.8808083124690647 1.0044100773328397 1.1134850680922088 0.9393696741189843 1.1305264517398466 1.114113118805737 1.0 17.608996587260965 4.740606712849631 5.3821452121151845 1.0331820509372736 1.2502028976832138 0.41035883862468936 0.07564054395629295 0.16052746752329058 17.089796571012602 0.018462579944340318 0.12856089249774397 55030.91233349304 -4.740606712849631 0.21702084674594024 DGDFENPVPYTGAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGDFENPVPYTGAVK 15 0 P30040;F8VY02 P30040 ERP29 Endoplasmic reticulum resident protein 29 0 178.84 1.6176e-06 81872000.0 238660.0 212900.0 177160.0 156150.0 161190.0 213100.0 222140.0 208370.0 290270.0 198560.0 False True 237375.0810776188 219986.24779923246 202102.5880976753 175918.5739895798 181716.5910520181 198368.89858344226 211394.23954279203 223919.6274814207 218736.84791872522 185887.73080423154 1.276980896214239 1.1834360818084972 1.0872293035333274 0.9463700117725855 0.9775609733134766 1.0671435802955458 1.137214589839836 1.2045960565156535 1.176714821211567 1.0 17.504072025264243 4.461187817117455 2.8026353195372637 1.083376848515649 1.271967345936245 0.39884788916394565 0.07982713673838084 0.3561480569063363 5.178198711152656 0.02376302055007269 0.11431206487412446 28919.30270291835 -4.461187817117455 0.18859049742059608 DGDKPEETQGK ddPTM_BT-474_Trastuzumab_2h_R1 6 DGDKPEETQGK 11 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;;; 186.58 3.6155e-06 7070480000.0 10035670.0 7685730.0 6254950.0 5917830.0 6169570.0 8869660.0 10520500.0 10235890.0 17329700.0 9184610.0 False True 9981639.067787768 7941544.8769281125 7135592.590999967 6667026.671231215 6955228.169593649 8256521.281133799 10011583.22278717 10999744.088596238 13059027.641082902 8598440.326459758 1.1608662372257825 0.9236029530250739 0.8298705718805529 0.7753762796625973 0.8088941605130997 0.9602347597536055 1.1643487472930159 1.2792720157337152 1.5187670257938168 1.0 23.035643562005685 2.154496939633176 2.3782874961714944 1.2906945372503784 0.8894469675310498 0.5339592357954596 0.15350188952925922 0.21199848027347581 2.3954935532284334 0.07217437884370698 0.046087161129510376 142.72397727204134 -2.154496939633176 -0.4012475697193286 DGDKS(ph)PMSSLQISNEK ddPTM_BT-474_Trastuzumab_2h_R1 6 DGDKSPMSSLQISNEK 16 1 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 DGDKS(1)PMSSLQISNEK;DGDKS(0.999)PMS(0.001)SLQISNEK;DGDKS(0.934)PMS(0.065)S(0.001)LQISNEK;DGDKS(0.934)PMS(0.066)SLQISNEK;DGDKS(0.988)PMS(0.003)S(0.009)LQISNEK;DGDKS(0.998)PMS(0.001)S(0.002)LQISNEK 281.65 1.0177999999999999e-35 2351370000.0 4270300.0 2666520.0 2540590.0 2228730.0 2269090.0 3886970.0 3695130.0 3636610.0 6322180.0 3654250.0 True False 4247309.179274932 2755273.5062546195 2898282.988795851 2510886.9894831665 2558045.1615498704 3618272.912843183 3516382.4451326095 3907992.3045314075 4764163.451871723 3421032.636439173 1.241528401113355 0.8053923475931765 0.847195363740396 0.7339558713174559 0.7477406483360666 1.0576551870049713 1.0278716454434889 1.1423428887831637 1.392609763825745 1.0 21.70600043671685 2.17438141124578 1.601668833954106 1.1890292351440788 0.8684172966454466 0.36436591569677845 0.16579985763799698 0.3899381634220883 1.9462060778052073 0.09477356276855618 0.05412317995822334 149.41060050313965 -2.17438141124578 -0.3206119384986321 DGDSYDPYDFS(ph)DTEEEMPQVHT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 8 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 2 DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(0.999)DTEEEMPQVHT(1)PK;DGDSYDPY(0.001)DFS(0.999)DT(0.005)EEEMPQVHT(0.996)PK 276.62 8.2983e-52 10013010000.0 6280790.0 4538780.0 3491401.0 3771888.0 4091831.0 5786600.0 5585680.0 5129220.0 8094770.0 5698840.0 True False 6246974.924501372 4689850.548549552 3982959.912998485 4249408.63405961 4612901.423667542 5386585.9621912055 5315479.3190302625 5511988.44205141 6099922.397860811 5335135.152177607 1.1709122161509977 0.8790499986931591 0.74655276752882 0.7964950301821608 0.8646269104888045 1.009643768816728 0.9963157759669272 1.033148792828916 1.1433491793307329 1.0 22.347093387872782 2.6379880503693016 3.4851680307111623 1.0396259588823236 0.8772818923461565 0.2950615234492102 0.11158133110256777 0.31761439780493333 7.2293294742522844 0.03945826220326147 0.03713096500009733 434.49826876919315 -2.6379880503693016 -0.16234406653616706 DGDSYDPYDFS(ph)DTEEEMPQVHTPK ddPTM_BT-474_Trastuzumab_2h_R1 10 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 1 DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(0.999)DT(0.001)EEEMPQVHTPK;DGDSYDPYDFS(0.997)DT(0.003)EEEMPQVHTPK;DGDSYDPYDFS(0.999)DT(0.001)EEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPY(0.013)DFS(0.973)DT(0.014)EEEMPQVHTPK 295.01 4.0555e-62 15673478000.0 7027307.0 5773040.0 5294707.0 4982765.0 5284822.0 7319517.0 7028647.0 6245345.0 9180049.0 7429588.0 True False 6989472.759919209 5965192.1465236265 6040155.723181754 5613582.538105597 5957812.756105892 6813536.018079688 6688644.492571025 6711404.357119329 6917748.93030436 6955425.333049699 1.0048950891195294 0.8576315409755263 0.8684092537779236 0.8070796923707679 0.8565705863876495 0.9796001957930878 0.9616442089873316 0.9649164552495634 0.994583163366543 1.0 22.729707309414355 2.7343149759209435 24.892106708341608 0.9753883110779166 0.8731599415888158 0.5183102327849713 0.04852848053534853 284.3008173414761 1666843.8458245015 0.015646813622026468 0.015239452622093166 542.3941239304467 -2.7343149759209435 -0.10222836948910075 DGDSYDPYDFSDTEEEMPQVHT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 1 DGDSYDPYDFSDTEEEMPQVHT(1)PK 137.29 5.4255e-05 518140000.0 371960.0 326850.0 324760.0 286790.0 316940.0 418390.0 441780.0 368150.0 494630.0 432140.0 True False 369957.408688641 337729.00466500287 370483.3851354765 323097.5845947592 357300.4303494421 389467.684084122 420409.4136365119 395623.2224278206 372735.0642024286 404560.45522633207 0.9144675509168776 0.8348047870275896 0.9157676692058518 0.7986385728531022 0.8831817982544778 0.9626934097308982 1.0391757479146426 0.9779087830185689 0.9213334110816672 1.0 18.625995781389182 2.724701397410745 3.766173141943329 0.9855298495949871 0.8647645724813869 0.6357272963014352 0.04222331450142902 0.13835487371781008 4.4034010785733 0.01347835230820119 0.013323927707850142 530.5195559081932 -2.724701397410745 -0.12076527711360019 DGDTLNQHGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGDTLNQHGIK 11 0 Q9NRR5;Q9NRR5-2 Q9NRR5 UBQLN4 Ubiquilin-4 0 92.247 0.010138 920570000.0 472620.0 934420.0 927350.0 1182900.0 1111700.0 690920.0 750850.0 575880.0 364910.0 631780.0 False True 470075.4664330181 965521.6048311819 1057912.8193293037 1332655.0187145306 1253268.405437859 643158.3266507358 714528.5169744543 618855.0898593878 274982.8200434837 591459.2595059297 0.7947723513969357 1.6324397484920974 1.788648672459743 2.2531645202879274 2.118942911612823 1.0874093461449779 1.2080773197655734 1.046319048883169 0.46492267324242786 1.0 19.173919271686575 2.6105469825297942 5.828855564341201 0.9784872886621838 1.7445797405137486 0.46641763298401606 0.40496571811254956 0.2278534510446011 9.881618008881109 0.1403086559831833 0.13177797563792137 407.89368584260296 -2.6105469825297942 0.7660924518515648 DGDVTVTNDGATILSMMDVDHQIAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGDVTVTNDGATILSMMDVDHQIAK 25 0 P48643;B7ZAR1;E9PCA1 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ;;; 293.07 6.7966e-63 602197000.0 443993.0 373070.0 321795.0 295457.0 327401.0 467092.0 429000.0 394387.0 557897.0 431780.0 False True 441602.59102025954 385487.40942442283 367100.93890771875 332861.82590611133 369093.5766922381 434803.02945629857 408247.6310608529 423818.16059660754 420410.7597867948 404223.4307345443 1.0924715329286845 0.9536493436907533 0.908163433872778 0.8234599990931835 0.9130929793493932 1.0756502379542567 1.009955386106629 1.048474997667642 1.0400454991508912 1.0 18.624793424122814 2.7456557309234495 24.88038465503257 1.0365832746317676 0.9309880325114419 0.3507906931032503 0.0653612582158181 586.467012807106 2056560.4543720055 0.021203422179794755 0.02208066008539519 556.7442378791771 -2.7456557309234495 -0.10559524212032567 DGEDLKDHSTESK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGEDLKDHSTESK 13 1 Q9UHB6;Q9UHB6-4;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;; 160.27 2.6522e-05 1316700000.0 2836650.0 1947870.0 1592440.0 1666490.0 1517190.0 2648970.0 2672510.0 2141960.0 4073170.0 2198210.0 False True 2821377.791581445 2012703.675437722 1816641.7102633885 1877467.463130931 1710395.1534103325 2465852.938904648 2543230.4813203705 2301803.931852492 3069391.8311817055 2057918.3558177373 1.3709862607549066 0.9780289241056656 0.88275693986 0.9123138718420624 0.8311287707673357 1.198226806196504 1.2358267149572069 1.1185108123192982 1.491503208815127 1.0 20.972754316379504 2.6389530266265173 8.44501829236361 1.211212805165127 0.9834829242067344 0.26142443209638255 0.179181239967113 0.4337230650404814 33.42522272676364 0.05745846624361008 0.05412917988432438 435.4647711861135 -2.6389530266265173 -0.22772988095839253 DGEEAGAYDGPR ddPTM_BT-474_Trastuzumab_2h_R1 6 DGEEAGAYDGPR 12 0 H7BZJ3;P30101 H7BZJ3;P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;; 182.16 4.0104e-05 9660470000.0 2108628.0 2335682.0 1936438.0 1836854.0 1843413.0 2353152.0 2343992.0 2044357.0 3034930.0 2142512.0 False True 2097275.381138597 2413423.763420415 2209071.638579172 2069399.528063115 2078160.7187851209 2190484.140963983 2230604.1520410003 2196917.3003744986 2287012.167478474 2005775.049863191 1.0456184412512495 1.2032375034204503 1.1013556274567515 1.0317206449468317 1.0360886276488817 1.0920886373142344 1.1120908858613752 1.0952959558073798 1.1402136882869618 1.0 20.93572838432481 4.00453565556625 24.998278780808633 1.0782187496771198 1.1313951188982414 0.12857402915744598 0.05296117365004354 236.7235975175517 1304659.2872667555 0.012756824176909558 0.027375629831659535 10104.984590212776 -4.00453565556625 0.05317636922112157 DGEEEIVYAVDFNHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGEEEIVYAVDFNHK 15 0 Q9P2I0 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 0 130.27 6.077100000000001e-05 79861000.0 105100.0 72992.0 65201.0 62193.0 69189.0 81431.0 75798.0 79984.0 113700.0 82889.0 False True 104534.15327770785 75421.49459540418 74380.73406274844 70066.62742320794 77999.80903466759 75801.86663795533 72131.36116352104 85952.8122305225 85680.15850194324 77598.95305515688 1.3471077786759005 0.971939589723524 0.9585275462399481 0.9029326384520291 1.0051657395329263 0.9768413574352712 0.9295403909927817 1.1076542768486548 1.1041406504678264 1.0 16.243749567627802 4.741017300017967 24.684704597191942 0.9963864695872077 1.347107927285132 0.7373573787593903 0.06300524030553452 105.04818372982535 1055445.4831940543 0.016533459315063663 0.1122364727033932 55082.963813673145 -4.741017300017967 0.3507214576979244 DGEERGEEDPEEEHELPVDMETINLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGEERGEEDPEEEHELPVDMETINLDR 27 1 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C003;H7C118;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 0 77.52199999999998 0.008723700000000001 43370000.0 58331.0 59721.0 48102.0 60142.0 63052.0 59607.0 74200.0 64833.0 69891.0 49664.0 False True 58016.95237718338 61708.777382893146 54874.343489920844 67755.97103350179 71081.29846151642 55486.50838978524 70610.66252847387 69671.16767530341 52667.29954141868 46494.40100051039 1.2478266442565094 1.327230291282078 1.180235518881477 1.457293127246827 1.5288141568000009 1.193401940788013 1.5186917351123363 1.4984851116705127 1.1327664924824072 1.0 15.50476937243365 1.056304717964448 5.238655825578274 1.0019512050619859 1.376072646061019 0.49665604599542623 0.12506333411429957 0.13996425895989925 7.4326868570154945 0.12416976020000711 0.03137153120021685 11.384257696339347 -1.056304717964448 0.3741214409990332 DGELPVEDDIDLSDVELDDLGKDEL ddPTM_BT-474_Trastuzumab_2h_R1 5 DGELPVEDDIDLSDVELDDLGKDEL 25 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 ;;;; 270.68 5.9082e-53 508907000.0 771449.0 553876.0 466043.0 412806.0 436500.0 637585.0 573897.0 610167.0 978425.0 615808.0 False True 767295.6043000416 572311.4278348882 531657.8034816257 465067.19727404707 492085.68766180257 593510.2496636505 546135.4096105591 655700.7599052455 737305.2689732956 576506.606220247 1.3309398296936532 0.9927231044014159 0.922205917061968 0.8066988170754353 0.8535646987431181 1.029494273369883 0.9473185627328528 1.137369030693715 1.278919028885538 1.0 19.136977614328746 1.6705343247584437 4.986898762701139 1.1604015935662468 0.9713793378442144 0.18301754693297345 0.1473592085057303 0.22786937162166418 12.822352490437524 0.08086871546444269 0.03906094825584089 46.83109631850289 -1.6705343247584437 -0.18902225572203246 DGEQS(ph)PNVSLMQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGEQSPNVSLMQR 13 0 F2Z305;Q58WW2;Q58WW2-2;Q58WW2-4;Q58WW2-3 F2Z305 DCAF6 DDB1- and CUL4-associated factor 6 1 DGEQS(1)PNVSLMQR 178.03 5.0895e-07 0.0 128430.0 125670.0 102450.0 118040.0 106100.0 136100.0 115370.0 124780.0 164620.0 104810.0 True False 127738.54714991429 129852.84998088091 116874.06948863648 132983.8518970862 119611.20609603026 126691.72734493908 109789.11234380078 134091.7172200013 124051.60679498583 98120.93606764448 1.3018480282521099 1.3233959558983466 1.1911226510116415 1.355305577246096 1.2190181921376129 1.2911793590880332 1.1189162756061792 1.3665963921049287 1.264272557586128 1.0 16.582273376731827 -0.9782106226082351 5.4853815386234075 0.999999326040448 1.2713847804404053 0.5552488533241224 0.07253581597185196 5.527357794163075e-07 1.0305936825875882e-07 0.06496213299808724 0.015311683485781649 0.10514518207505662 0.9782106226082351 0.2713854543999572 DGETGWFPEDFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGETGWFPEDFAR 13 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 0 104.79 0.0034979 55219000.0 70686.0 63355.0 65726.0 70935.0 70710.0 90797.0 75232.0 77877.0 101970.0 85983.0 False True 70305.43442995298 65463.732876093716 74979.6494993667 79915.36372687064 79714.49936899434 84520.4171031479 71592.740745851 83688.57719139318 76840.85982799601 80495.49132625012 0.8734083520902233 0.8132596223404323 0.9314763878572082 0.992793042320492 0.9902976931454408 1.0500018784975753 0.8894006305978547 1.0396678846545753 0.9545983080786251 1.0 16.29662035751678 4.034631907569884 3.5290109034063075 0.9886971440373036 0.8439745165757724 0.6260074715925537 0.04430031522044002 0.1298986029255407 3.405375279381653 0.010687600575102945 0.02458534686998401 10830.086056534614 -4.034631907569884 -0.1447226274615312 DGFIDKEDLHDMLASLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGFIDKEDLHDMLASLGK 18 1 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 ; 221.47 3.7378999999999996e-19 8345600000.0 8546200.0 7257100.0 6949000.0 5921600.0 6264700.0 8675200.0 8534000.0 8150600.0 12717500.0 9065600.0 False True 8500188.208772091 7498648.186490418 7927358.79820922 6671273.952844666 7062472.411213962 8075503.843224209 8121177.816954114 8758839.159908174 9583442.530769246 8487025.646549355 1.0015509040234947 0.883542538785565 0.9340561850938104 0.7860555901061834 0.8321492953288546 0.951511657857136 0.9568932810113532 1.0320269461503668 1.1291874126320887 1.0 23.016827606399346 1.9510569055940188 1.6415579747924904 1.065418624468054 0.8879081310680165 0.5531009295776327 0.06323519080098225 0.2751929822048922 1.380525125007947 0.04263123547942609 0.020042609050628657 89.34225411951095 -1.9510569055940188 -0.17751049340003744 DGFQHPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGFQHPAR 8 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ;;; 120.87 0.0014576 914240000.0 1405620.0 1723340.0 1652300.0 1588490.0 1414770.0 1556200.0 1646560.0 1480000.0 2127800.0 1655500.0 False True 1398052.2980990626 1780700.3301189728 1884929.4779509439 1789592.67112845 1594932.5735012314 1448623.5569007623 1566909.6023299699 1590445.1152877228 1603432.2010592306 1549844.572655143 0.9020596792515556 1.148954134844848 1.2162054900264898 1.154691704383349 1.0290919500197655 0.9346895698186224 1.0110108006802203 1.0261965253477154 1.0345761306324306 1.0 20.56369211030561 3.1111319034859535 5.776227064462735 1.003510415979508 1.115882138563843 0.26937986923880886 0.08047510367607354 0.26896209701948504 12.6770970890005 0.024005849721907228 0.028879097330233916 1291.6115010011442 -3.1111319034859535 0.11237172258433503 DGFVMGEGAAVLVLEEYEHAVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGFVMGEGAAVLVLEEYEHAVQR 23 0 Q9NWU1 Q9NWU1 OXSM 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial 0 76.733 0.015625999999999998 9665100.0 5812.6 4865.3 7447.7 5238.8 6218.7 8566.2 6473.6 4025.5 8050.0 5290.5 False True 5781.305607440573 5027.238569364044 8496.271423431113 5902.031542853735 7010.614583877317 7974.038756665804 6160.447236446467 4325.903251074815 6066.1853644735465 4952.855760575073 1.1672671054667074 1.0150181657582402 1.715428801917021 1.1916421208616934 1.415469160172619 1.6099880840745386 1.2438172105644323 0.8734159564082554 1.2247853880100086 1.0 12.274044891393931 1.988074252085297 23.827287773019894 1.0286557274711543 1.3556584905500124 0.3173862352527327 0.2096452791355774 350.4124843520603 700113.1825224592 0.08286786669135357 0.056748297450439786 97.29135502851555 -1.988074252085297 0.3270027630788581 DGFYEAELCPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGFYEAELCPDR 12 0 Q04206;Q04206-4;Q04206-2;A0A087X0W8;E9PKH5;Q2TAM5;Q04206-3;A0A087WVP0;E9PKV4;E9PQS6;E9PI38;E9PMD5;E9PNV4;E9PRX2;E9PJR1 Q04206 RELA Transcription factor p65 0 ;;; 198.62 4.2135e-07 1694310000.0 698380.0 829620.0 710910.0 765990.0 694210.0 774130.0 796370.0 707010.0 924120.0 784700.0 False True 694619.9996773127 857233.4001841198 810999.9486595079 862964.2554612765 782613.5285949587 720616.2152060078 757846.5406711677 759770.676324036 696383.0085735773 734619.7741845311 0.9455503705279097 1.1669076035091714 1.1039723911049946 1.1747087211465481 1.0653314219096586 0.9809376775978186 1.0316173989631843 1.0342366255624194 0.9479502635858138 1.0 19.48663820488428 2.9639641926494638 6.165764563620442 1.0076528148829602 1.1052667142885468 0.35122493252034825 0.06306831981871563 0.21403857656300107 24.108511417380516 0.01847494039660673 0.02014338958972719 920.3736843008618 -2.9639641926494638 0.09761389940558662 DGGFCEVCKK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGGFCEVCKK 10 1 P07602;C9JIZ6;P07602-2;P07602-3;Q5BJH1 P07602 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D 0 ;;; 149.31 3.7801e-05 2592350000.0 3901160.0 4071030.0 3277580.0 3446370.0 3596460.0 4819530.0 4523470.0 4582640.0 6732160.0 4370320.0 False True 3880156.588019621 4206531.772560398 3739034.774763937 3882680.088635724 4054447.863111486 4486367.235053291 4304652.474766518 4924619.866974406 5073109.374322273 4091402.4359808024 0.9483683525963046 1.0281393332435647 0.9138760689689048 0.9489851339214342 0.9909677492137345 1.0965353091641805 1.0521215016421612 1.2036508126568248 1.2399438710081652 1.0 21.96416401900159 2.491585859255781 1.3798197482853811 1.1572472644894405 0.9607118110916151 0.5462180088974803 0.06961063190804972 0.2853812973136819 1.1000433720135465 0.03415865864053672 0.02570651908089971 310.1600508893349 -2.491585859255781 -0.1965354533978254 DGGGLAPPPGSCS(ph)PSLSPSSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGGGLAPPPGSCSPSLSPSSNR 22 0 A8MUP8;P10276-3;P10276-2;P10276 A8MUP8 RARA Retinoic acid receptor alpha 1 DGGGLAPPPGS(0.014)CS(0.972)PS(0.014)LSPSSNR 213.93 3.279999999999999e-24 143020000.0 75616.0 87764.0 90406.0 70134.0 70500.0 84117.0 87751.0 78390.0 100040.0 89739.0 True False 75208.89185772743 90685.17168554163 103134.37897696116 79012.95720899907 79477.75711376179 78302.18978011915 83506.14888862675 84239.85985635438 75386.48246732097 84011.78019057667 0.895218404932257 1.0794339969921682 1.2276180643120025 0.9404985471056796 0.9460311034175247 0.9320382165750376 0.9939814237860105 1.0027148533843744 0.8973322824050433 1.0 16.35830401733286 DGGLQNMELHGMIMLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGGLQNMELHGMIMLR 16 0 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 0 182.57 1.6874e-12 0.0 139140.0 154220.0 144290.0 133720.0 145010.0 150100.0 170810.0 151370.0 191060.0 157450.0 False True 138390.88569990743 159353.11947204138 164604.77780883716 150648.93828937958 163476.1639583916 139723.94029739403 162547.26774243423 162665.99804128558 143975.8230728344 147401.406200273 0.938870864718054 1.0810827629115676 1.1167110413125239 1.0220318935403792 1.1090543039750786 0.9479145681117339 1.1027524901735515 1.1035579797676607 0.9767601733542197 1.0 17.169390762156656 4.745479310711564 24.00940187444774 1.0584803279246437 0.9388707669518972 0.24126820298077223 0.058397638759444 606.3229567207593 2103978.0136294314 0.013267865381130263 0.12880629604905255 55651.81217450186 -4.745479310711564 -0.11960956097274655 DGGQTES(ph)NEEGKENR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGGQTESNEEGKENR 15 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 DGGQT(0.042)ES(0.958)NEEGKENR;DGGQTES(1)NEEGKENR;DGGQTES(1)NEEGKENR 194.92 1.9286e-08 1400920000.0 625645.0 458358.0 400122.0 366519.0 441930.0 567314.0 547529.0 549161.0 827340.0 496995.0 True False 622276.5968356937 473614.1689467377 456455.69967722957 412920.26781996037 498207.1659756714 528096.9184935098 521042.9305061018 590142.1824030546 623453.1427880182 465276.3536011739 1.3374343914522195 1.0179201355947498 0.9810421186125757 0.8874731428408412 1.0707768880142254 1.135017746778046 1.1198568903691375 1.268369169925436 1.339963094970501 1.0 18.827728342363272 2.2571581656542032 1.7767161307793544 1.2233303967968987 1.0461820501154315 0.14403694551304147 0.13670934285428965 0.5303518834438982 3.3608141248096923 0.06970983725768669 0.044708180823209445 180.78324003958244 -2.2571581656542032 -0.17714834668146717 DGGQTESNEEGKENR ddPTM_BT-474_Trastuzumab_2h_R1 5 DGGQTESNEEGKENR 15 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 ;;;; 262.36 4.8967e-25 2746958000.0 1350311.2 1043861.0 1012500.8 945010.3 976480.8 1206953.8 1285163.1 1139210.7 1730914.9 1295526.1 False True 1343041.2745328785 1078605.2823577 1155052.1118252818 1064648.507085912 1100829.8418248491 1123519.9246696383 1222994.8510531965 1224224.3872287194 1304354.115966359 1212844.5151423044 1.1073482691021594 0.8893186792629771 0.9523497013875338 0.8778112064603727 0.9076430062394993 0.9263511609629652 1.008369033115264 1.0093827955227055 1.0754503975419452 1.0 20.20996318028459 2.148027041625661 4.120377936861556 1.024903184459832 0.9367493925582098 0.27769410192874255 0.0628737786710782 0.2759450142215409 8.736010838329328 0.024177571601894154 0.017444101703168045 140.61350753103787 -2.148027041625661 -0.0881537919016222 DGGS(ph)GNSTIIVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 DGGS(1)GNSTIIVSR;DGGS(0.999)GNST(0.001)IIVSR 154.99 4.5479e-05 1489940000.0 541330.0 601860.0 481030.0 494430.0 559300.0 692420.0 618020.0 566470.0 721600.0 664540.0 True False 538415.5394274166 621892.5462679476 548754.8428122865 557024.7873049504 630523.5397691769 644554.6351813561 588124.0115343306 608742.8678763761 543771.3489446102 622128.4882586829 0.8654410617562683 0.9996207503832598 0.8820603029259007 0.8953532876529162 1.0134940798708503 1.0360474521677077 0.9453417141858754 0.9784841545839307 0.8740499096362043 1.0 19.246853045516353 4.756578762307788 23.55066696590867 0.9577803811625898 0.8654408888729974 0.20544309734319577 0.05476102277067739 2871.4142930731737 3752953.450855624 0.013196041023816312 0.389945309017116 57092.46079095311 -4.756578762307788 -0.09233949228959237 DGGSEGSGGNNDGEKEPSLTDAIPSHPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGGSEGSGGNNDGEKEPSLTDAIPSHPR 28 1 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 257.01 8.543799999999995e-54 954750000.0 516880.0 426060.0 371240.0 324100.0 372330.0 522290.0 493890.0 456290.0 673610.0 485890.0 False True 514097.1755107662 440241.1495412908 423507.36512407474 365131.0267692782 419744.0185271909 486185.32163841435 469998.65385698 490340.67679367244 507607.841411556 454880.08420864184 1.130181762969783 0.9678180356196107 0.9310307921281133 0.8026973249543323 0.9227575202757504 1.0688208574447362 1.033236385089578 1.077955913692554 1.1159157303944072 1.0 18.795126745640555 2.734483664175446 24.594722307227432 1.0629183959747244 0.9425001346261485 0.31157532079043715 0.07990054054582452 337.2106380517924 2034258.1232013027 0.026747986981869972 0.026085937883016986 542.6048410669382 -2.734483664175446 -0.12041826134857592 DGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVK 37 0 Q9Y5H6-2;Q9Y5H6 Q9Y5H6-2 PCDHA8 Protocadherin alpha-8 0 16.512 0.097438 958000000.0 413180.0 472990.0 457510.0 518140.0 455730.0 456940.0 524650.0 457930.0 646200.0 494480.0 False True 410955.48478861345 488733.18622150744 521923.4312517919 583736.4708739091 513764.5141766629 425352.8133210614 499270.67514236836 492103.06192142336 486952.66863637307 462921.8630543733 0.88774265721026 1.0557574079496488 1.127454702199901 1.2609827218407814 1.1098298766595904 0.9188436478557523 1.0785204048220243 1.0630369857118254 1.05191114851099 1.0 18.820409174839956 0.7829837109023668 0.5750203137815846 1.0007736755967835 1.0758811013089313 0.031004971134602544 0.09885487477853384 4.721915824320352 3.391334289982753 0.11955382004552616 0.04797084279353822 6.067135731354997 -0.7829837109023668 0.07510742571214779 DGGT(ph)SYSPQENSHNHSALHSSNSHSSNPSNNPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSK 34 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 DGGT(0.351)S(0.351)YS(0.291)PQENS(0.006)HNHS(0.002)ALHSSNSHSSNPSNNPSK;DGGT(0.34)S(0.34)YS(0.301)PQENS(0.009)HNHS(0.009)ALHSSNSHSSNPSNNPSK 160.62 2.8435e-14 591300000.0 21815.2 99529.0 197089.0 188037.0 203402.0 246310.0 239590.0 6060.5 106859.0 104045.0 True False 21697.749387096585 102841.7625984491 224837.41807170233 211842.46492013198 229304.0390418921 229283.16945137325 228000.11637731866 6512.765284595435 80525.03128723972 97404.75902259404 0.2227586167741924 1.055818664615698 2.3082795987365357 2.1748677071414235 2.354135889692029 2.353921633317615 2.340749247420567 0.06686290639130613 0.826705307782355 1.0 16.571704641082604 4.541324982125068 3.9423021111272325 1.664142435006563 0.29744826821840936 0.25932475146852463 0.7625858686924488 0.365428894406883 10.617596741469931 0.21304347012402375 0.9963389254307267 34779.631973007345 -4.541324982125068 -1.3666941667881536 DGHADAAQDTEQFVATVLQAASR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGHADAAQDTEQFVATVLQAASR 23 0 Q6PJG6;Q6PJG6-3 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 0 ;;; 179.58 4.8121000000000005e-17 162728000.0 100365.0 128359.0 116297.0 121343.0 116416.0 127479.0 132317.0 69502.9 126148.0 111296.0 False True 99824.64599159974 132631.35172034608 132670.60672835505 136705.01135842202 131240.88754830777 118666.67678328771 125916.32120997395 74689.55932657502 95060.51569659742 104192.99399470064 0.9580744555308289 1.2729392508587656 1.27331600371425 1.3120365018532338 1.259594167674871 1.1389122457631193 1.2084912466991609 0.716838594064912 0.9123503611138413 1.0 16.66889874755311 1.7534687539667277 24.999999999999943 0.8566941630837781 1.2125728308157908 0.626374115189086 0.11525779608714035 2.8211082783239156 4736.964255001582 0.05188913326581964 0.028775389195331385 56.685078704063386 -1.7534687539667277 0.3558786677320127 DGHGEAIMFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGHGEAIMFK 10 0 Q9Y2J8 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 ;;; 102.52 0.0029357 1112920000.0 2494730.0 2618280.0 2354640.0 2161680.0 2079700.0 2683730.0 2711750.0 1195700.0 3144850.0 2246490.0 False True 2481298.650870561 2705427.867016318 2686152.845102224 2435348.4663579543 2344537.467652347 2498210.06192089 2580572.2926090113 1284929.205641573 2369843.856331011 2103117.084883147 1.179819549137668 1.2863895626460742 1.277224584598661 1.1579709393560782 1.1147916987144888 1.1878606663783036 1.227022647078345 0.610964180205386 1.1268244993895258 1.0 21.004097739450067 1.7708284781561157 24.999999999161943 0.8743422527192222 1.2045184738450565 0.5028342367480555 0.1313414546683124 19.83402632373415 15374.365880550524 0.05758494706509862 0.031944013672834254 58.996803003227164 -1.7708284781561157 0.33017622112583433 DGHNLISLLEVLSGDSLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGHNLISLLEVLSGDSLPR 19 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;E9PIA2;Q15149-4;Q15149-5;Q15149-8;E9PKG0 Q15149-3;Q15149-4;Q15149-5;Q15149-8;E9PKG0 PLEC Plectin 0 164.59 2.347e-11 539070000.0 451930.0 590380.0 524980.0 490960.0 587200.0 645410.0 549810.0 184380.0 492600.0 416530.0 False True 449496.8590941434 610030.4414077535 598892.6207920385 553115.4856607366 661976.4393929213 600794.3258317193 523213.58982183586 198139.37186266892 371205.33050182264 389946.6987907259 1.1527135900575387 1.5643944244162988 1.5358320063980035 1.4184386927136907 1.6976074972446082 1.5407088396820863 1.341756684809456 0.5081191159641156 0.9519386409808761 1.0 18.572917412141067 1.892105061558798 5.575219937137579 0.7864002617695472 1.4931514632070386 0.7312016212260484 0.18026510871211993 0.10262493760131937 4.378248119843261 0.07768920168744906 0.04655607424038732 78.00187845249242 -1.892105061558798 0.7067512014374914 DGHPVVVNILIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGHPVVVNILIGR 13 0 A1L0T0;M0R026 A1L0T0 ILVBL Acetolactate synthase-like protein 0 ; 148.62 4.3354e-05 818520000.0 290450.0 402450.0 356120.0 301850.0 442390.0 497920.0 328960.0 247870.0 449270.0 361670.0 False True 288886.2494720285 415845.30496383784 406258.60054947005 340064.17905062187 498725.74424903677 463499.96237760474 313046.94805076474 266367.3180583564 338553.4284095689 338587.91095873446 0.8532089898130966 1.2281752877305745 1.1998615053890185 1.0043600732456963 1.4729579175962344 1.3689205886446842 0.9245662290905521 0.7867006158138352 0.9998981577662713 1.0 18.369170938186507 2.1349104674230235 7.780009301516677 0.8936156989032392 1.1944152170694458 0.3481944747746796 0.1720649202873737 0.2407491650855324 16.18677230323136 0.06597191329295425 0.048678113702105515 136.43018480689634 -2.1349104674230235 0.30079951816620654 DGIDDESYEAIFKPVMSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGIDDESYEAIFKPVMSK 18 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 0 264.22 5.4587e-31 162390000.0 375910.0 320670.0 294130.0 257380.0 285130.0 369970.0 385360.0 341740.0 541960.0 368630.0 False True 373886.1423275276 331343.30710089166 335540.94737620954 289964.2816102344 321439.61540208425 344394.8447157018 366718.6645818421 367242.3741205578 408401.2198919363 345103.71779997885 1.0834022441457178 0.9601267387473852 0.9722901553053918 0.8402235810693204 0.9314290134318105 0.9979459129307674 1.062633190159925 1.0641507326021056 1.1834158800011667 1.0 18.396670490437714 2.292410572442193 2.3297443854775937 1.085697129637953 0.9524389803544117 0.39955510461042165 0.06944346648452544 0.2935035254941233 3.266881330112346 0.030519033326385368 0.022026851139504415 196.06973977607066 -2.292410572442193 -0.1332581492835413 DGIDDESYGQIFKPIISK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGIDDESYGQIFKPIISK 18 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 0 ;; 247.46 2.0028e-24 3816880000.0 4379640.0 3812900.0 3664940.0 3061710.0 3195580.0 4502400.0 4472800.0 4317870.0 6327270.0 4417670.0 False True 4356060.504863751 3939810.071553279 4180931.695770458 3449322.172075803 3602518.171313404 4191159.685509573 4256433.576244716 4640091.385099588 4767999.08957423 4135730.518442428 1.053274744434824 0.9526273663103816 1.0109294300309133 0.8340297213984977 0.8710717865317203 1.0134025093801373 1.0291854261935194 1.1219520624973187 1.1528795380434802 1.0 21.97971075295266 2.199103045415592 2.1742601993978488 1.100097121005107 0.9440094663866542 0.4327839120244653 0.0708475634947558 0.27531386606313757 2.618973025419879 0.0347173341333446 0.022482454952110983 158.1623267831137 -2.199103045415592 -0.15608765461845275 DGIISDIFDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGIISDIFDKK 11 1 P19525-2;P19525 P19525-2 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase 0 ; 107.09 0.003598300000000001 825830000.0 836140.0 761020.0 762380.0 626750.0 684590.0 1028790.0 855060.0 819250.0 1274830.0 917440.0 False True 831638.315143887 786350.0906536956 869716.4772742472 706096.4857378746 771768.4786171669 957672.1688111656 813697.4811535963 880386.5950672064 960665.2283468087 858888.193740099 0.9682730781552018 0.9155441841963967 1.0126073260909498 0.8221052412690872 0.8985668731298283 1.11501377686996 0.9473846387505735 1.0250305004583786 1.1184985838069486 1.0 19.71211081437441 2.7588021529934026 24.775933637840126 1.0334131003291078 0.9223081523127185 0.441886176849577 0.06588061552738109 730.3660172812636 893977.552788993 0.019989526748173895 0.021175901322679772 573.8549775252208 -2.7588021529934026 -0.11110494801638937 DGISCEASNPHGNKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGISCEASNPHGNKR 15 1 P50895;A0A087WXM8 P50895 BCAM Basal cell adhesion molecule 0 ;;; 214.47 1.6033e-12 686350000.0 390027.0 450751.0 480488.0 371953.0 478670.0 717930.0 530093.0 397109.0 610085.0 535763.0 False True 387927.13796807354 465753.97455026594 548136.5339234354 419042.2116627995 539625.7872006302 668301.1889254377 504450.3764380892 426743.2900586434 459737.7264701669 501570.14665021905 0.7734254930419594 0.9285918981838241 1.0928412258668385 0.8354608312743698 1.0758730175720568 1.332418193923117 1.0057424266717347 0.8508147721882702 0.916597069304396 1.0 18.936091956226296 4.632582579968291 3.2123369904646935 1.0072985821465799 0.7631197027538963 0.22757180879093708 0.13446800051861088 0.46707056877761827 7.743353513535649 0.03578326147694705 0.2408424174856211 42912.37782540857 -4.632582579968291 -0.24417887939268357 DGIVLGADTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGIVLGADTR 10 0 Q99436;Q5TBG5;Q99436-2 Q99436 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type 0 ; 157.99 1.9042e-05 752860000.0 1010480.0 1252180.0 1212320.0 1037280.0 822870.0 999750.0 1152100.0 903820.0 1552740.0 1148080.0 False True 1005039.687954881 1293858.0543412042 1383004.1183256593 1168599.5416452857 927657.6169673931 930639.6356583589 1096368.5215506013 971267.6379049658 1170088.032650021 1074808.5514792614 0.9350871711726174 1.2038032750674197 1.2867446173760226 1.0872629735192743 0.8630910274119571 0.8658654923963133 1.0200593585170745 0.9036657147621387 1.088647862951617 1.0 20.03564827432124 3.4227317257748626 6.460419171243723 0.9500313722172049 1.15443505415014 0.39172617988383607 0.10562098711942762 0.17919083562036459 15.889199479297341 0.02909263742169147 0.03972053161083629 2646.8646011011747 -3.4227317257748626 0.20440368193293512 DGKLDKDEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGKLDKDEIR 10 2 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ;; 91.937 0.0055168 1783020000.0 4483570.0 4193900.0 3682620.0 3672980.0 3676160.0 4486700.0 4534640.0 4244130.0 7618500.0 4529960.0 False True 4459430.957291453 4333491.426233918 4201100.886093145 4137978.891400878 4144297.185692578 4176544.989555749 4315282.139192969 4560848.531855465 5741022.75766978 4240854.074506123 1.0515407696056567 1.021844031909677 0.9906261362181845 0.9757418714961973 0.9772317351370339 0.9848358175451103 1.0175502536468468 1.0754551917438018 1.3537421134534942 1.0 22.015923410756905 1.499252282913409 4.57953088823119 1.1886012705707725 1.0023812839777997 0.4038574028239289 0.08300443410237626 0.1379128347201155 6.259853846172699 0.047303969627988836 0.01946823817537028 31.568379070613084 -1.499252282913409 -0.18621998659297279 DGKPMLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGKPMLR 7 1 Q9Y3F4 Q9Y3F4 STRAP Serine-threonine kinase receptor-associated protein 0 67.98100000000001 0.058086 466880000.0 444520.0 461960.0 401060.0 425600.0 452530.0 483620.0 498530.0 433320.0 608670.0 459570.0 False True 442126.7537108149 477336.0593392834 457525.7619239873 479480.9163622488 510157.01314454863 450188.48771902506 474414.19933045824 465656.53875437594 458671.4342601384 430239.84914232796 1.0276285532178928 1.1094650118784686 1.0634202360289338 1.114450270745682 1.1857502603757728 1.0463663201269342 1.1026737766764068 1.0823184781294672 1.0660831049808337 1.0 18.714781628899196 0.723218474082431 1.1448678530480902 1.0000106681520888 1.0955747851726065 0.3135550670542109 0.04100948547405353 1.0923815770026921 2.4710176256385123 0.03799263301542181 0.011802924277203248 5.2871115576530325 -0.723218474082431 0.0955641170205177 DGKWER ddPTM_BT-474_Trastuzumab_2h_R1 1 DGKWER 6 1 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YFM8;A0A286YF78;A0A286YFE1 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 69.176 0.085905 1558300000.0 2511300.0 2852400.0 2484000.0 2797400.0 2799500.0 2778300.0 3100400.0 2904700.0 4233000.0 3092300.0 False True 2497779.4398316625 2947340.40968779 2833725.6086849472 3151550.5531761143 3155999.7310634973 2586242.6604147214 2950421.8073218353 3121463.463767738 3189833.8692939756 2894946.7665487775 0.8628066908495869 1.0180983096975817 0.9788524063477633 1.088638516463378 1.0901753937347647 0.8933644964732533 1.0191627153266078 1.078245548359082 1.1018627030219106 1.0 21.465105388923075 5.559727654042228 1.241770872643981 1.0367919089860986 1.6380544154449794e-09 0.4065919906340377 0.06070489994407242 9.873753577678448 2.8505665247772622 0.017415183919464308 21.42614892255553 362850.4399914903 -5.559727654042228 -1.0367919073480443 DGLAFNALIHR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGLAFNALIHR 11 0 O43707 O43707 ACTN4 Alpha-actinin-4 0 ;;; 221.59 8.3009e-12 3530290000.0 2795660.0 3092160.0 3031360.0 2440630.0 2246170.0 2545090.0 2743070.0 2453740.0 3451650.0 2726670.0 False True 2780608.4771870254 3195080.6763498047 3458149.138946544 2749613.507756567 2532206.435407353 2369153.9187974334 2610377.2245549946 2636850.5386392553 2601037.1072403877 2552651.5861803633 1.0893019996308086 1.251671279248389 1.3547282197337058 1.0771597356421547 0.991990622267568 0.9281148792979206 1.0226139903648224 1.0329848981015393 1.0189550040130724 1.0 21.283565205701354 3.530799805511495 5.519844055147468 1.0033625399163282 1.2334214315458893 0.7141340039413255 0.0657833919127832 0.11119848820883993 7.504714434301093 0.01814759188367833 0.027880048875709485 3394.687533569976 -3.530799805511495 0.23005889162956117 DGLAPEKT(ph)SPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGLAPEKTSPDR 12 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 DGLAPEKT(0.669)S(0.331)PDR 87.566 0.016937 651010000.0 393710.0 343560.0 250970.0 232940.0 359490.0 581890.0 587370.0 400370.0 833630.0 500000.0 True False 391590.30910529295 354995.1869135942 286304.39452965424 262430.18011612387 405268.9206358334 541665.3139217234 558956.6691287012 430247.64243766543 628193.0565696993 468089.5719284634 0.836571315810339 0.7583915733287195 0.6116444622983594 0.5606409453535748 0.8657935252994042 1.1571830401821135 1.1941233102585005 0.9191566491539332 1.3420359996092885 1.0 18.836425099570697 2.9428133953759943 3.949357263009147 1.104760521357018 0.6911736119663967 0.7162755270716373 0.1278318137587717 0.12727546198343928 4.000803818526202 0.04020021866943145 0.0442963800262276 876.6240784913048 -2.9428133953759943 -0.41358690939062126 DGLAPEKT(ph)SPDRDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 DGLAPEKT(0.5)S(0.5)PDRDK;DGLAPEKT(0.634)S(0.366)PDRDK;DGLAPEKT(0.904)S(0.096)PDRDK 212.69 3.3491e-09 10329000000.0 2984730.0 1742260.0 1513890.0 1501470.0 1529760.0 2531150.0 2389700.0 2303500.0 4580560.0 2465260.0 True False 2968660.545314679 1800250.0708815914 1727032.5530322306 1691555.948050814 1724565.8684021034 2356177.558186201 2274101.0814594883 2475398.8669359903 3451742.364359378 2307924.996184729 1.286289870867651 0.7800297123423058 0.748305320098018 0.732933674554916 0.7472365311927438 1.0209073354122162 0.9853444480296563 1.0725646938388878 1.495604220269512 1.0 21.138164908822905 1.845626426991928 1.5145142455238816 1.2324160838420304 0.8563163964581414 0.330934697737141 0.19677834299325161 0.4176911842453101 1.8063902110802637 0.1420955678061942 0.060316207632213285 70.08521774829772 -1.845626426991928 -0.376099687383889 DGLAPEKT(ph)SPDRDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGLAPEKTSPDRDKK 15 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 DGLAPEKT(0.5)S(0.5)PDRDKK;DGLAPEKT(0.5)S(0.5)PDRDKK;DGLAPEKT(0.5)S(0.5)PDRDKK 126.69 8.514e-05 2015850000.0 1489390.0 861500.0 702710.0 711800.0 698980.0 1336250.0 1310180.0 1242890.0 2517030.0 1142990.0 True False 1481371.289726785 890174.5067122537 801645.4599351854 801913.807017502 787990.9598209542 1243878.1826941564 1246801.588026359 1335640.7630675393 1896741.682974019 1070043.3996370293 1.3844029973263539 0.8319050489112972 0.7491709777445592 0.7494217592384759 0.736410280263632 1.1624558247974743 1.165187868500743 1.2482117674111197 1.7725838817541562 1.0 20.029237881064017 2.2619313773837266 1.6232253432056656 1.353375611634393 0.877293285121341 0.35718760778068426 0.255987407362748 0.3942984275665297 2.070611720546914 0.1357769025473925 0.08497539465422632 182.7811381920049 -2.2619313773837266 -0.47608232651305193 DGLAPEKTS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGLAPEKTSPDR 12 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 DGLAPEKT(0.034)S(0.966)PDR;DGLAPEKT(0.151)S(0.849)PDR;DGLAPEKT(0.02)S(0.98)PDR 145.69 3.8825e-05 1905650000.0 2354240.0 1848790.0 1653020.0 1473310.0 1457840.0 2234390.0 2069710.0 1995260.0 2817250.0 1975400.0 True False 2341565.033420653 1910325.8575328435 1885750.847692589 1659830.894938122 1643487.282705341 2079931.8784883048 1969590.2202399946 2144156.4329249887 2122976.486715914 1849328.2807749717 1.2661705646113879 1.0329836391905014 1.0196950251051988 0.8975317752900854 0.8886941814444259 1.1246958693654419 1.0650300656271943 1.1594244543897136 1.147971676411215 1.0 20.818569914676115 2.6151680371597967 18.970833722652237 1.1104331447979279 1.0139044204975556 0.11508256160215491 0.10560882886964634 5.766602693668923 862.8051528470094 0.03542181850741376 0.03339585166575345 412.25699866231884 -2.6151680371597967 -0.09652872430037229 DGLAPEKTS(ph)PDRDK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 DGLAPEKT(0.108)S(0.892)PDRDK;DGLAPEKT(0.036)S(0.964)PDRDK;DGLAPEKT(0.048)S(0.952)PDRDK;DGLAPEKT(0.148)S(0.852)PDRDK 210.39 4.1753e-09 5610660000.0 6005130.0 3754740.0 3169400.0 2719068.0 2888160.0 5007140.0 4762900.0 4678960.0 8341440.0 4368380.0 True False 5972799.047312665 3879714.2511117384 3615623.971081356 3063301.7300076736 3255950.0565345064 4661008.197339738 4532500.330955092 5028127.754477465 6285803.8815694675 4089586.2484417195 1.4604898110630429 0.9486813617367894 0.8841050784682778 0.7490493032577323 0.7961563490133363 1.1397261028828407 1.1083029078264675 1.2294954670275908 1.5370268530134525 1.0 21.96352345955332 2.1436416062661854 1.7489998539459934 1.2732108514885345 0.9573021441323396 0.21760649037166424 0.22240206299779006 0.5053763292583667 3.0006232124209262 0.12616189226338098 0.07185709867926804 139.20075995194793 -2.1436416062661854 -0.3159087073561949 DGLEMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGLEMEK 7 0 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;P13693-2;H0YCX0 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 ; 109.86 0.016128999999999998 619170000.0 740220.0 697510.0 632150.0 590660.0 586890.0 716540.0 746120.0 704140.0 977410.0 724770.0 False True 736234.7377661737 720726.1986963016 721151.2252536999 665437.4954382654 661626.9627304357 667007.276353729 710027.325144809 756686.5023504713 736540.402122993 678514.5580931845 1.085068446924999 1.0622118421773346 1.0628382496026856 0.9807269239857295 0.9751109314290799 0.9830404792318764 1.0464437596448692 1.1152104156423288 1.0855189374165786 1.0 19.372020244632928 -0.8253180982525272 6.541100159386116 0.9999999991074661 1.0447258350879554 0.07438721105885415 0.04652271429358 7.717412571023391e-10 1.1798340252850128e-10 0.051790677908458 0.012207179577587931 0.14951401420927993 0.8253180982525272 0.04472583598048929 DGLGFCALIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGLGFCALIHR 11 0 P12814-3;P12814;P12814-2;P12814-4;H9KV75;G3V2N5;G3V2W4;G3V2X9 P12814-3 ACTN1 Alpha-actinin-1 0 ; 125.22 0.0003329 971770000.0 1086340.0 1349840.0 1227780.0 1200710.0 1137320.0 1148190.0 1128350.0 1044960.0 1446510.0 1176450.0 False True 1080491.26614372 1394768.6084044902 1400640.7519449294 1352719.7628884295 1282150.9605762218 1068818.3278485348 1073767.3997844127 1122940.2213993648 1090036.9927409487 1101367.953790482 0.9810447656708073 1.2663965785496454 1.2717282604096718 1.22821783422415 1.1641440593614103 0.9704461839207107 0.9749397520500948 1.0195867943448322 0.9897119205161758 1.0 20.07086510582359 2.808724774873023 4.598009397951485 0.9929626118978286 1.1977297767056991 0.6024888269886572 0.07751303855227883 0.1468213048311112 6.0129123827422015 0.02410422629964139 0.025411606732576416 643.7611659198144 -2.808724774873023 0.2047671648078705 DGLGGLPDIVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGLGGLPDIVR 11 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 107.55 0.0050753 127490000.0 115720.0 128980.0 117030.0 113210.0 99499.0 102150.0 124500.0 98663.0 159360.0 113590.0 False True 115096.97637770053 133273.02132994347 133506.80675700452 127542.37439231704 112169.6078732227 95088.6109352353 118477.45936381374 106025.7340605626 120087.86331459686 106340.58895070844 1.0823428524648373 1.2532657816266082 1.255464240647457 1.1993762273729383 1.0548146195166943 0.8941892448922892 1.1141320593845032 0.9970391842545485 1.1292758907914329 1.0 16.698332836133016 3.211111758905924 4.781446086023254 1.0267361008082942 1.2069251664374585 0.5357266362895207 0.0758332233117294 0.13832310450857518 7.642231621919606 0.021291343711535887 0.026711786918188506 1625.967119176585 -3.211111758905924 0.18018906562916426 DGLILTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGLILTSR 8 0 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 ;;; 161.02 0.00081417 1725220000.0 1246340.0 1521110.0 1421880.0 1466020.0 1379620.0 1402410.0 1404410.0 1285590.0 1631820.0 1480370.0 False True 1239629.8439213932 1571739.2268195883 1622068.3447974848 1651617.9816855832 1555306.4293516055 1305464.6976180454 1336473.3229328033 1381527.2538937454 1229679.826267731 1385891.5191914774 0.8944638355566151 1.1340997509938826 1.1704150882918973 1.1917368414586513 1.1222425477132323 0.9419674480580178 0.9643419448244372 0.9968509329645958 0.8872843287078633 1.0 20.402382904108435 2.741000142464844 24.77270139289024 0.9616652310499262 1.1130625541860777 0.4371443191544139 0.08150243516364089 181.1868385895013 1839911.0934368148 0.025789905829452894 0.026187698021112833 550.807877090972 -2.741000142464844 0.1513973231361515 DGLKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGLKPR 6 1 P56192;P56192-2 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ; 102.98 0.03199 276210000.0 960570.0 938310.0 797780.0 871670.0 942750.0 894890.0 1039890.0 980230.0 1378340.0 1108050.0 False True 955398.3978493587 969541.0811296282 910100.4895719319 982023.3326256623 1062803.6243829648 833028.3606444694 989586.5479344279 1053379.7401070849 1038666.5758097485 1037333.3003506666 0.921013908959049 0.9346476015007699 0.8773462582029091 0.9466806206777446 1.02455365505348 0.8030479310390086 0.9539716382380685 1.0154689334189828 1.0012852912931949 1.0 19.984448083055725 1.9944813441839069 24.979275420332232 1.0016577185917597 0.9192549065834631 0.358216945003788 0.052472905133436575 269.5270608090909 1219971.5388378685 0.019935706962033017 0.014278012469855422 98.73732206353954 -1.9944813441839069 -0.08240281200829658 DGLLDDEEFALANHLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGLLDDEEFALANHLIK 17 0 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 0 177.58 1.0201e-09 35234000.0 60375.0 55425.0 45420.0 38098.0 44547.0 65433.0 53076.0 51567.0 71781.0 56223.0 False True 60049.94770829312 57269.78761987999 51814.74120228277 42921.20289372404 50219.79639924467 60909.77072271412 50508.51110999026 55415.19139192024 54091.534366121195 52634.80000506801 1.1408791845416175 1.0880593754391714 0.9844198362546018 0.815452949181745 0.9541177394881178 1.1572148220730267 0.959602983294835 1.0528242035038513 1.0276762590702904 1.0 15.68372934625435 DGLLENQTPEFFQDVCKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGLLENQTPEFFQDVCKPK 19 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 291.7 1.3412e-49 7939040000.0 4730490.0 3683670.0 3220590.0 3046040.0 3207990.0 4839220.0 4415310.0 4428250.0 6536340.0 4553820.0 False True 4705021.5674468465 3806278.729124465 3674021.078129897 3431668.3516824804 3616508.5112535707 4504696.111698572 4201724.587177842 4758708.501197876 4925546.589468703 4263191.308878547 1.1036383841485466 0.8928238151540343 0.8618006586939599 0.8049529338586491 0.8483101623241278 1.0566488307285355 0.9855819931015778 1.1162315168187182 1.1553660702982602 1.0 22.02350236639885 2.7242322810484967 20.496072134760222 1.0672467007380277 0.8941197702455927 0.4553827771960439 0.08744232169865776 66.33495174987654 94888.0135685596 0.029222009746598287 0.027755004718862275 529.946808503474 -2.7242322810484967 -0.173126930492435 DGLLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGLLLR 6 0 O14746-3;O14746 REV__O43296 TERT Telomerase reverse transcriptase 0 ;;; 131.65 0.035445 3478920000.0 2762040.0 3328780.0 2883980.0 3048130.0 2986880.0 3206990.0 3061800.0 2808850.0 3832870.0 3129790.0 False True 2747169.4835314895 3439576.4300099937 3290019.315996469 3434022.945468188 3367241.4633752247 2985298.3297424396 2913689.036788157 3018460.650051295 2888310.546326673 2930044.122651974 0.9375863872811017 1.1738991926499875 1.122856577674565 1.1720038339764194 1.1492118624915262 1.0188578071788403 0.9944181434889062 1.0301758347991343 0.9857566730812476 1.0 21.482490959245386 2.6803571496722998 6.657025397933506 1.0079789514917967 1.1185436646352265 0.40117928276612813 0.06399231870159224 0.23604744785534962 22.222496107978667 0.02022662843368899 0.01912261819598033 479.0238640508915 -2.6803571496722998 0.11056471314342975 DGLLPENTFIVGYAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGLLPENTFIVGYAR 15 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 141.13 1.1208e-05 45517000.0 29890.0 30552.0 26671.0 30419.0 34162.0 34525.0 25589.0 30567.0 37895.0 32413.0 False True 29729.07556109121 31568.904850925977 30426.0449715122 34270.042281069655 38512.32820596218 32138.368013108124 24351.16231052717 32848.06475608096 28556.285016984497 30344.37458983455 0.9797227974851896 1.040354440572377 1.0026914504840383 1.129370525650913 1.2691752170388746 1.0591211203896278 0.8024934650880851 1.0825092031089396 0.9410734412219829 1.0 14.889141465929125 2.456815501317292 24.99175803835988 0.9654601477181938 1.0882328398913625 0.27308790084334345 0.09892567241566694 345.2583257607772 424932.01946826914 0.035602000583602085 0.029789606356290677 286.29614570240864 -2.456815501317292 0.12277269217316877 DGLNDDDFEPYLS(ph)PQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGLNDDDFEPYLSPQAR 17 0 Q9Y5A9;S4R3J8 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 1 DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR 356.41 6.818799999999997e-88 1395861000.0 1511720.0 1573690.0 1329120.0 1476380.0 1468020.0 1530600.0 1411580.0 1268130.0 1613730.0 1416440.0 True False 1503581.0674878815 1626069.320334306 1516248.5430818605 1663289.556623347 1654963.6453637537 1424793.224644847 1343296.4826407405 1362764.3000336601 1216047.8643741487 1326041.586524706 1.1338868122744712 1.2262581632872567 1.1434396616893814 1.2543268427821344 1.2480480719319578 1.0744709963274601 1.0130123340711026 1.0276934855453492 0.9170510764757919 1.0 20.338694590424872 2.505412758481738 3.0499336237723296 0.9966628301482555 1.201900718549366 0.8207437172173102 0.04666534635898817 0.10657530505481688 2.0142410858296267 0.016919400655822432 0.014814049714397932 320.1936821687606 -2.505412758481738 0.20523788840111046 DGLNQTTIPVS(ph)PPSTTKPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 DGLNQTTIPVSPPSTTKPSR 20 1 Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2;Q71RC2-6 Q71RC2-5 LARP4 La-related protein 4 1 DGLNQTT(0.002)IPVS(0.943)PPS(0.017)T(0.017)T(0.017)KPS(0.003)R;DGLNQTTIPVS(0.997)PPS(0.001)T(0.001)T(0.001)KPSR;DGLNQTTIPVS(0.994)PPS(0.001)T(0.002)T(0.002)KPSR;DGLNQTTIPVS(0.86)PPS(0.109)T(0.014)T(0.014)KPS(0.003)R;DGLNQTTIPVS(0.996)PPS(0.002)T(0.001)T(0.001)KPSR;DGLNQTTIPVS(0.867)PPS(0.029)T(0.04)T(0.054)KPS(0.01)R 172.8 3.5251e-12 14343660000.0 2891530.0 2544760.0 2467240.0 2260240.0 2410170.0 2858440.0 2679940.0 2619220.0 3269880.0 2813030.0 True False 2875962.3237591856 2629460.798260098 2814605.9463654836 2546386.152252374 2717090.863303201 2660842.770843992 2550301.0638350127 2814679.496529666 2464061.888147178 2633500.0170438527 1.0920684659753679 0.9984662165340371 1.0687700505599105 0.9669208793515539 1.0317413501873374 1.0103826670298761 0.9684074605390616 1.0687979792341866 0.9356604792860903 1.0 21.32855003815308 7.999994693633205 0.9916658165125092 1.007020244380705 75.7835312318365 0.2779347914173791 0.04101233619590924 2010.8193335972285 2.8317772331405093 0.011431187329400497 341597.88291532086 99998778.17135641 -7.999994693633205 74.7765109874558 DGLPRT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGLPRTPSR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DGLPRT(0.992)PS(0.008)R;DGLPRT(0.872)PS(0.128)R;DGLPRT(0.982)PS(0.018)R 106.26 0.0047935 2572670000.0 2060730.0 2400650.0 2346300.0 2303460.0 2229610.0 2475950.0 2459840.0 2137250.0 2904050.0 2500770.0 True False 2049635.258648625 2480554.1840264285 2676638.6455948064 2595077.799820928 2513537.6175661646 2304793.404259382 2340848.141698668 2296742.447735596 2188385.789776326 2341168.717583085 0.8754752458697528 1.0595367029281164 1.143291649803883 1.1084539872461507 1.073625150843902 0.9844627544138488 0.9998630701486785 0.9810238922492726 0.9347407443729707 1.0 21.15879747611479 2.7296491896835535 20.644983599643396 0.9807013643921914 1.060690588827515 0.21350329633087972 0.06814974382719602 92.31616023322131 213864.68431684433 0.022665359351135523 0.021763828686452564 536.5981730288036 -2.7296491896835535 0.07998922443532375 DGLPRTPS(ph)RR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGLPRTPSRR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DGLPRT(0.052)PS(0.948)RR;DGLPRT(0.048)PS(0.952)RR;DGLPRT(0.19)PS(0.81)RR 84.29700000000003 0.0078357 3620014000.0 374092.0 500870.0 442841.0 522860.0 449606.0 471031.0 524010.0 437698.0 597710.0 539900.0 True False 372077.93023752805 517541.1551676916 505189.16355702525 589054.0223899571 506860.6590764541 438469.7356577075 498661.63438740646 470361.24734540895 450412.3794036628 505443.11976835533 0.7361420418741705 1.023935503177649 0.9994975572890448 1.165420992692354 1.0028045476388094 0.8674957052707697 0.9865830889456823 0.9305918489126443 0.891123771968816 1.0 18.947189221470506 1.706292310334987 6.581970633235959 0.9333435810575254 0.9770849709863009 0.008830555200079693 0.10734744467008418 0.5997159809069286 60.6177646082735 0.05487233682877408 0.02822954111891842 50.85015842714107 -1.706292310334987 0.04374138992877552 DGMDNQGGYGSVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGMDNQGGYGSVGR 14 0 P31942;P31942-3;P31942-2;P31942-4 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ; 105.66 0.0022959 720390000.0 224387.0 219755.0 239999.0 236587.0 258931.0 289957.0 242091.0 236584.0 318763.0 276339.0 False True 223178.92532373962 227069.4123302971 273788.77309129626 266538.8899421882 291904.3280457231 269912.95507535985 230380.13345257088 254239.09942921 240208.12985536404 258702.80843427932 0.8626845865124647 0.8777230278425124 1.058313880503734 1.0302898973356123 1.1283384583738614 1.0433321412663688 0.8905204193447962 0.9827458038353563 0.9285099427762352 1.0 17.980936190199763 4.258201447834758 20.903615971474792 1.006025171559964 0.870202407867418 0.4323426813012976 0.0630210332489188 37.37460384430466 39772.05531931511 0.016878006245566846 0.045932344754716484 18121.804790286973 -4.258201447834758 -0.13582276369254598 DGMEYPFIGEGEPHVDGEPGDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGMEYPFIGEGEPHVDGEPGDLR 23 0 Q9UBS4;H7C2Y5 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 0 ;;; 231.37 2.3484e-33 1696840000.0 881430.0 1083660.0 965380.0 1013730.0 1040250.0 1068190.0 1071460.0 966220.0 1273870.0 1021040.0 False True 876684.4788160789 1119728.968013697 1101297.1127666177 1142068.114059922 1172719.67145519 994348.5395487895 1019629.3864253176 1038324.2427657446 959941.8074834677 955876.353043676 0.9171525961747704 1.171416119300667 1.1521334420083693 1.1947864495479767 1.2268528954828177 1.0402480785120496 1.0666958997140592 1.0862537183387162 1.0042531174945866 1.0 19.866464485542775 2.691769828570905 24.974047643192794 1.0504461116563049 1.1391867689822266 0.23514770194167733 0.08222593675578775 643.5005454918263 343460.2775006094 0.026630656570487084 0.025107681016098338 491.7788290835972 -2.691769828570905 0.08874065732592173 DGMVSFHDNPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGMVSFHDNPEK 12 0 Q9UNS2-2;Q9UNS2;H7C3P9;K7ELN6 Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 0 ;;; 243.11 2.5078e-16 2065640000.0 1675430.0 2129340.0 2140440.0 2183770.0 2095630.0 2832700.0 2586650.0 2486260.0 2966610.0 2729740.0 False True 1666409.671037772 2200213.7946867878 2441795.3469620007 2460235.0580930174 2362496.058727843 2636882.116458552 2461523.857537425 2671797.3461724706 2235528.716037376 2555525.6561520104 0.652080978731778 0.8609632970775044 0.9554963148516148 0.9627119384109503 0.9244657955362412 1.0318355091097164 0.9632162571374342 1.0454981501518308 0.8747823410247147 1.0 21.285188644644872 5.1554224120850005 1.0926241762025395 0.9811780788150287 0.15743244264807682 0.8110875639173029 0.046899834627839185 1.4195437394456918 0.7515811110563478 0.013062381282391929 1.6765438405186917 143028.4433708415 -5.1554224120850005 -0.823745636166952 DGNASGTTLLEALDCILPPTRPTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGNASGTTLLEALDCILPPTRPTDK 25 1 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ; 244.22 8.599700000000001e-39 786000000.0 280450.0 215387.0 208658.0 179044.0 195039.0 266240.0 261910.0 262070.0 330550.0 251220.0 False True 278940.08836092404 222556.02609080888 238035.23271215122 201710.95204220497 219876.06056327655 247835.45546154724 249240.4127066382 281626.9941644958 249090.38164307232 235186.92451973716 1.1860356987555023 0.9462942148900447 1.0121108271568686 0.8576622720591643 0.9348991701484846 1.053780757444909 1.0597545472206795 1.1974602531139495 1.0591166245816033 1.0 17.843448328595343 2.391147855285361 2.6879956689298377 1.1071032689200655 0.9803270893854831 0.1540988263411024 0.09273074294470511 0.3665320477995152 5.409034800498878 0.036105641952103945 0.028956081793775852 246.1205377364764 -2.391147855285361 -0.12677617953458242 DGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGNASGTTLLEALDCILPPTRPTDKPLR 28 2 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;; 281.76 4.637699999999998e-62 45242086000.0 7080360.0 6661223.0 5607273.0 5243193.0 5533780.0 7266306.0 6715435.0 6756977.0 9354125.0 7334258.0 False True 7042240.128461943 6882937.780760665 6396728.2991093695 5906980.696203317 6238474.081716218 6764003.369264461 6390583.753597059 7261216.934973985 7048926.23260324 6866179.375265822 1.0256417351737632 1.0024407176945032 0.9316284864552817 0.8603009582712263 0.9085801201450111 0.9851189430952778 0.9307335862238015 1.0575338245795347 1.026615508763976 1.0 22.711076116748405 1.7472899215511546 11.824014765633763 1.0308279994260467 0.9469769202485795 0.3724020175245286 0.04678956734170419 0.11113630202278418 97.24587788521175 0.02397365557688535 0.01312938004888319 55.88431366179968 -1.7472899215511546 -0.08385107917746726 DGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYK 36 3 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ; 242.34 3.6742e-50 6023480000.0 1203117.0 1260766.0 1085646.0 1289443.0 1202493.0 1654678.0 1717102.0 1436026.0 2523513.0 1785195.0 False True 1196639.5517508653 1302729.8341608595 1238495.5201958045 1452686.3515904318 1355623.3558155862 1540294.0045530417 1634039.216293363 1543189.552112274 1901627.0344917672 1671262.3267176652 0.7160094095467633 0.7794885418852239 0.7410539329443222 0.8692150408508797 0.8111373864796023 0.9216350897935673 0.9777275477169357 0.9233676409992894 1.1378387486460817 1.0 20.672506770557604 2.7314537642618255 0.5695805777346509 1.0437007639651705 0.7242864291485127 0.8038412284626728 0.05507013589645336 0.37642395189128997 0.25822613837016173 0.04401716276039013 0.050874835110882054 538.832477286465 -2.7314537642618255 -0.3194143348166578 DGNDLHMTYK ddPTM_BT-474_Trastuzumab_2h_R1 5 DGNDLHMTYK 10 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 ;;;; 145.55 3.0225e-05 3214420000.0 7018280.0 7821280.0 7542880.0 7243890.0 7396610.0 8973310.0 9045640.0 8477940.0 11184920.0 9053350.0 False True 6980494.36028421 8081606.576736392 8604851.940111736 8160965.73126723 8338524.440357759 8353006.200599669 8608067.835499514 9110606.932907026 8428546.336249372 8475557.452037117 0.823602978303974 0.953519178233399 1.0152549833808917 0.9628824743917848 0.9838319765449266 0.9855406264271157 1.0156344151062946 1.0749271637250568 0.9944533305267791 1.0 23.01487682923581 5.696951773793326 0.9246405680240186 1.0132724340985282 2.238626166083209e-18 0.7765872918948314 0.028992218215792863 5.218923668900685 0.9290681715331655 0.010336521050911155 8.075262833058199 497681.81686059857 -5.696951773793326 -1.0132724340985282 DGNGYISAAELR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGNGYISAAELR 12 0 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2 P0DP25 CALM2;CALM1 0 ;;; 261.49 5.3416e-21 2619920000.0 2231950.0 2018870.0 1850760.0 1446990.0 1424010.0 1939950.0 1608440.0 1831670.0 2148500.0 1796030.0 False True 2219933.4291929547 2086066.8675173128 2111330.920905699 1630178.7856367729 1605349.232731463 1805845.8226510987 1530633.6123625126 1968358.5164317975 1619030.9634250223 1681405.8277413563 1.3202841292485623 1.2406682747849995 1.2556938283851817 0.9695332077126216 0.9547660691101203 1.0740094942319212 0.9103296700348796 1.170662361195635 0.9629031473025625 1.0 20.681236547917994 3.747983705374741 22.795461059638892 1.0172129936732586 1.2690608056018902 0.742740566119044 0.07157099091716344 104.61100315708887 253062.32130537982 0.018540035578602343 0.03277070730533791 5597.365999175519 -3.747983705374741 0.2518478119286316 DGNLASTLGQHK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGNLASTLGQHK 12 0 Q9BZK7;A0A0D9SF63;A0A1B0GVH3 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 0 ;; 175.21 2.8286e-05 810260000.0 585519.0 616157.0 641786.0 551600.0 561876.0 721372.0 732435.0 649836.0 963740.0 780142.0 False True 582366.6307612765 636665.4132702285 732143.8902960863 621432.5034431784 633427.5781000289 671505.2515670336 697004.3208765858 698330.0621203468 726239.1904543776 730352.6696468308 0.7973772876641714 0.8717232642938025 1.0024525420713828 0.8508663407004156 0.8672900153926035 0.9194260245420155 0.9543393895083989 0.9561545964609552 0.9943678179550678 1.0 19.478233749235542 1.9908432950603563 0.8562443627255872 1.0004725269023338 0.8798332785161153 0.4825489781168809 0.048852108368511594 0.5744194364807736 0.780734197450827 0.042565822185275604 0.02104061011408157 97.91366232616355 -1.9908432950603563 -0.12063924838621853 DGNLHEGDIILK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGNLHEGDIILK 12 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 0 72.29 0.04229 1036500000.0 619140.0 647650.0 648960.0 590770.0 559430.0 817880.0 788590.0 734380.0 1015700.0 799000.0 False True 615806.6190329201 669206.6387373074 740327.9271385599 665561.4214269875 630670.094498608 761341.8806824302 750442.888993654 789183.1647060799 765394.344682706 748007.1359416845 0.8232630271069087 0.8946527467212285 0.9897337760107635 0.8897795080378423 0.8431337940441465 1.017827028780893 1.0032563232821343 1.0550476416412229 1.0232447097167494 1.0 19.512692507836586 2.719618600037052 21.835482643677974 1.024479567955543 0.8942141650302835 0.6961486732618674 0.04337855206325954 95.26991206926641 109822.01896232666 0.014687207620809791 0.013882760459033666 524.346773576485 -2.719618600037052 -0.13026540292525945 DGNPDNETYLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGNPDNETYLHR 12 0 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;I3L352;Q9UMR2-3;Q9NUU7-2 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 189.3 8.1052e-06 742450000.0 234380.0 259640.0 229210.0 193370.0 203180.0 250730.0 211570.0 175260.0 260230.0 265270.0 False True 233118.12412206578 268281.9604443058 261480.77567096523 217850.62217332696 229053.76865778942 233397.625254934 201335.55082411336 188338.79115224766 196099.8034033478 248340.24149092694 0.9387045881993422 1.0802999901814438 1.0529134307881325 0.8772264247849904 0.9223385114013343 0.9398300648083293 0.8107246317205064 0.7583901425783569 0.7896416715472682 1.0 17.921958531744476 3.1082010995131437 0.9397075848610377 0.8203662516119843 1.0261592128529764 0.38455816442854307 0.08126414549612831 0.4783075671352968 0.926883672279572 0.03931696560191978 0.05582867367166952 1282.9245017142123 -3.1082010995131437 0.2057929612409921 DGNVLLHEMQIQHPTASLIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGNVLLHEMQIQHPTASLIAK 21 0 P40227 P40227 CCT6A T-complex protein 1 subunit zeta 0 ; 286.43 9.9146e-46 6385900000.0 3351500.0 3845000.0 3552100.0 3663700.0 3527800.0 4267700.0 4069200.0 3582900.0 4993300.0 4943500.0 False True 3333455.8963866527 3972978.500648416 4052204.8045933195 4127524.0443523754 3977044.419091194 3972683.944085206 3872357.250146435 3850274.1915975534 3762768.121792017 4628001.597656712 0.7202797635321638 0.8584652396533414 0.8755841412511753 0.891858820109798 0.85934378698246 0.8584015930540491 0.8367234039217097 0.8319517853120569 0.8130438251571073 1.0 22.141957931809987 DGPEETDWWWAALHGQEGYVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGPEETDWWWAALHGQEGYVPR 22 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 0 ;; 232.82 5.5906e-28 316380000.0 282090.0 263372.0 232260.0 240794.0 228760.0 288612.0 293958.0 229791.0 334938.0 273241.0 False True 280571.2587831454 272138.1778082641 264960.18915989005 271278.49571083474 257891.23003325038 268660.93175957014 279738.12851138925 246939.17127505472 252397.0178392596 255802.52544661047 1.0968275559175606 1.0638604029930232 1.0357997392609437 1.0604996773867048 1.0081653008819722 1.0502669248104957 1.0935706284486018 0.9653507948911721 0.9866869664347327 1.0 17.964670981937502 7.999999999999768 0.15751267557768894 0.9770033790463816 1.4000657708550903 0.41955224920570533 0.03240250062934342 64.699596101121 0.6600634434852399 0.10366939625145771 6.334384747337071 99999999.99994662 -7.999999999999768 0.42306239180870875 DGPGNPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGPGNPLR 8 0 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ;; 105.04 0.010386 196386000.0 288983.0 343979.0 278753.0 320222.0 320707.0 367510.0 339492.0 311918.0 420330.0 364166.0 False True 287427.1476370296 355428.1330753032 317998.9994354893 360762.07236689894 361547.1354706843 342104.8987254854 323069.47497461725 335194.9050475106 316745.3036334366 340924.6141018014 0.8430812436182819 1.0425417185312733 0.9327545923115236 1.0581872280397273 1.0604899749559442 1.0034620105878642 0.9476273100015813 0.9831936187142536 0.9290772520720819 1.0 18.379093237483676 4.750323458281459 24.406023799149022 0.9943035268250593 0.8430811163896987 0.49506053806530015 0.04609757546319572 1117.4877593876856 2318548.8716553804 0.011178078195830292 0.1762164514641131 56276.03075156183 -4.750323458281459 -0.15122241043536055 DGPIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGPISPK 7 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 DGPIS(1)PK;DGPIS(1)PK 69.27600000000001 0.073901 384340000.0 1282920.0 1050370.0 1030470.0 849320.0 1057760.0 1869830.0 1308440.0 1575700.0 2893600.0 1494360.0 True False 1276012.9012658114 1085330.9304879254 1175551.2189941937 956843.824917259 1192459.4661652884 1740573.0532063723 1245145.7584738042 1693286.735242474 2180511.0522534996 1398988.6654140379 0.9120966686947166 0.7757968004456391 0.8402864498164345 0.6839539508592631 0.8523724999675918 1.244165228952188 0.8900327709983962 1.210364870784237 1.5586338232469998 1.0 20.415952843179806 2.4562938149701763 1.0531790663585594 1.2431364881649043 0.7960066181644596 0.5002937723210474 0.1778678947279903 0.42496456322803067 0.9455227306322532 0.11002630014675652 0.07621847860575172 285.95244545556517 -2.4562938149701763 -0.4471298700004447 DGPLNMILDDGGDLTNLIHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGPLNMILDDGGDLTNLIHTK 21 0 P23526;P23526-2 P23526 AHCY Adenosylhomocysteinase 0 ; 264.59 7.8331e-37 786250000.0 825590.0 881790.0 807990.0 759560.0 833010.0 928980.0 984590.0 860740.0 1160320.0 977200.0 False True 821145.1151716714 911139.847096689 921747.9688250216 855720.218120559 939088.8858629039 864761.7991836991 936961.6202009442 924972.7895491573 874374.6834914231 914834.2593769894 0.8975889422100116 0.9959616594564175 1.00755733552517 0.935382785842883 1.0265125909281447 0.9452660854356393 1.024187289224415 1.0110823682740875 0.9557738732771992 1.0 19.803150868288505 4.740552315393893 24.649404027340026 0.9907022840759692 0.8975889047701109 0.4399035594422753 0.030922260615516395 128.39515353995293 1588883.7910107188 0.006935994156316607 0.04530173010199171 55024.01988085373 -4.740552315393893 -0.09311337930585828 DGPVRPQNAEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGPVRPQNAEEEKR 14 2 Q92504 Q92504 SLC39A7 Zinc transporter SLC39A7 0 ;; 149.3 4.2318e-06 1024840000.0 461498.0 537770.0 616890.0 437328.0 661460.0 853640.0 593240.0 542650.0 817250.0 569110.0 False True 459013.34604524745 555669.3493611707 703742.7498959969 492693.67995974974 745693.0102194181 794629.8760524155 564542.7148031238 583145.2985208667 615849.6880889446 532788.9125604162 0.8615294635906996 1.0429446564321287 1.320865981452261 0.9247446190124691 1.3996030935325807 1.491453476825698 1.0595992174276092 1.0945147032404514 1.1558980931667 1.0 19.023204534397525 4.536060942283908 3.802104225824647 1.1832813393427062 0.8763928618264357 0.25501766200494935 0.16937327030526578 0.3251531729894139 8.884856868248287 0.04193154224428927 0.19753312331353956 34360.61609809647 -4.536060942283908 -0.30688847751627046 DGQAMLWDLNEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DGQAMLWDLNEGK 13 0 P63244;J3KPE3;H0YAF8;D6R9L0;H0Y8W2;D6RAC2;D6R9Z1;D6RFX4;D6REE5;H0YAM7;H0Y8R5 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ;; 292.08 3.3657e-40 859960000.0 1639260.0 1478190.0 1326740.0 1328890.0 1277220.0 1687550.0 1616030.0 1607230.0 2253220.0 1695410.0 False True 1630434.4062989089 1527390.660565275 1513533.459769191 1497127.337745837 1439866.396323956 1570893.640565407 1537856.4550658972 1727169.663948571 1697944.1226011307 1587207.4822864737 1.0272345767612965 0.9623131680081115 0.9535826139055553 0.9432461442212516 0.9071696122864394 0.9897216703530369 0.96890700946704 1.08818140238381 1.0697682196880358 1.0 20.59805930121512 1.765730506655704 12.416301172116187 1.0592618864007004 0.9620102974893574 0.5541136856716209 0.035998507221029014 0.2525584357659692 114.92703608523364 0.016667058928030106 0.009212419106954832 58.30831705985277 -1.765730506655704 -0.097251588911343 DGQDAIAQS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 7 DGQDAIAQSPEK 12 0 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK 255.91 3.9299e-21 11201740000.0 14997480.0 10639050.0 9874620.0 8392470.0 8911320.0 13565270.0 12764870.0 13041960.0 18718260.0 11951040.0 True False 14916735.234056672 10993164.347808471 11264880.664264314 9454955.841500666 10046123.780468201 12627534.814110814 12147384.471561188 14015217.280930994 14105395.634833634 11188314.395399882 1.3332424087215269 0.9825576900420633 1.0068434141335814 0.8450742003985969 0.8979121809983015 1.128636036479514 1.0857206941338395 1.2526656639800366 1.2607257122335713 1.0 23.415489363924067 2.3030923567971526 2.213975764917673 1.187117338389723 1.004761086962873 0.1554911326941657 0.14194876635687678 0.4516160634749452 4.536036900852138 0.06295064645525704 0.045225970579522407 200.95201104822212 -2.3030923567971526 -0.1823562514268502 DGQDAIAQS(ph)PEKESK ddPTM_BT-474_Trastuzumab_2h_R1 6 DGQDAIAQSPEKESK 15 1 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(0.999)PEKES(0.001)K 303.45 4.4105e-44 16020197000.0 16510880.0 10866390.0 10004195.0 9494724.0 9882539.0 16269390.0 16390300.0 14907850.0 28421700.0 15256890.0 True False 16421987.256611204 11228071.22227852 11412698.69797822 10696755.084884018 11141021.763252188 15144725.36332458 15597438.571973635 16020349.467528444 21417552.866268035 14283182.218119295 1.1497428938334675 0.7861043184084611 0.7990305328108431 0.7489055955131887 0.7800097760510931 1.0603187113381745 1.0920142538115285 1.1216232645415263 1.4994944781351491 1.0 23.76781410428161 2.326513727390733 1.5997723076867318 1.2096112871268119 0.8421624484280786 0.4749509231712583 0.16141902928840035 0.32105629782794975 1.6545809111539345 0.08185159714797387 0.05443850474764964 212.08684294691346 -2.326513727390733 -0.36744883869873324 DGQPCMDHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGQPCMDHDR 10 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8;A0A6I8PRU9 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 68.44 0.059968 92246000.0 61460.0 65565.0 64273.0 78217.0 63426.0 60660.0 74443.0 63199.0 79529.0 78787.0 False True 61129.10618884796 67747.2913901205 73322.07972906917 88119.26418023037 71502.92514464485 56466.71697828062 70841.90769012374 67915.2302980194 59930.14358400212 73758.74620705571 0.8287709503256224 0.9184984137330665 0.9940798006956256 1.1946957982835253 0.969416222774743 0.7655596099717739 0.9604543370525332 0.9207752814475402 0.8125157580060552 1.0 16.170526511777698 2.9793137848146234 24.92037587424935 0.8927755202727986 0.9928015640713826 0.14922035059492578 0.10614939061777645 1395.411935929864 1681033.908167525 0.033454877474799596 0.03586322371043151 953.4848234761504 -2.9793137848146234 0.10002604379858404 DGQSS(ph)PQPSPR ddPTM_BT-474_Trastuzumab_2h_R1 6 DGQSSPQPSPR 11 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 DGQS(0.11)S(0.89)PQPSPR;DGQS(0.162)S(0.838)PQPSPR;DGQS(0.019)S(0.981)PQPSPR;DGQS(0.287)S(0.711)PQPS(0.002)PR;DGQS(0.009)S(0.991)PQPSPR;DGQS(0.127)S(0.873)PQPSPR 175.74 9.9307e-06 533179000.0 899412.0 902492.0 818756.0 830496.0 810008.0 928306.0 1019114.0 825398.0 1041348.0 927650.0 True False 894569.6657260662 932530.9006520655 934029.7280452707 935636.708447327 913157.7175064405 864134.3912172728 969815.5624264572 886993.3900461192 784721.7387482987 868446.5827988783 1.0300802414847405 1.0737918936207367 1.0755177653356955 1.0773681732178675 1.051484035510238 0.995034592032468 1.1167244844246853 1.0213563017168739 0.903592407744013 1.0 19.72807758750467 1.4384890214136874 6.179698574238552 0.9533096153926787 1.0594618343995443 0.5707498969042206 0.03717207816691338 0.11914874078814738 9.373476187937998 0.022255937368031827 0.008771200102497446 27.446629599120268 -1.4384890214136874 0.10615221900686567 DGQWFTDWDAVPHSR ddPTM_BT-474_Trastuzumab_2h_R1 7 DGQWFTDWDAVPHSR 15 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;;;;;; 214.82 2.4236e-12 5962149000.0 2796351.0 3473228.0 3183449.0 3527010.0 3441848.0 3476686.0 3474856.0 3004991.0 3709993.0 3454658.0 False True 2781295.756919804 3588832.2943693344 3631650.9481652584 3973529.104367519 3880146.9413686083 3236350.88005853 3306763.9400409996 3229238.6874551135 2795714.936509233 3234178.7687584865 0.8599697035261499 1.1096579845977375 1.1228974054391405 1.2286052777140852 1.1997317460772559 1.0006716113905099 1.0224431537253509 0.9984725391957014 0.8644280778524905 1.0 21.62496799509718 2.581334366842034 6.799711812191847 0.9801937400862022 1.1122613385344975 0.2854917120774978 0.1004509737093935 0.3439645306769147 19.474017682667476 0.03396423102755465 0.03191601017596499 381.35932202913745 -2.581334366842034 0.1320675984482953 DGQYFEPVVPLPDLVEVSSGEENEQVVFSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGQYFEPVVPLPDLVEVSSGEENEQVVFSHR 31 0 P49792;J3KNE0;A6NKT7;O14715;Q99666;J3KQ37;F8VYC4;A0A286YES2;P0DJD0 P49792;F8VYC4 RANBP2;RGPD3;RGPD8;RGPD5;RGPD1 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 1 0 ; 127.8 5.4357e-06 102219000.0 88713.0 93842.0 91806.0 88535.0 93743.0 100123.0 94354.0 95124.0 104209.0 96990.0 False True 88235.37906494095 96965.47424131297 104731.48680794294 99743.521922302 105680.61539170754 93201.7326741905 89789.73655271716 102222.63590988473 78528.08827905895 90800.0151626834 0.9717551137723108 1.0679015203641005 1.153430278841903 1.0984967540324173 1.1638832350673407 1.026450628969654 0.9888735854486792 1.1257997669574813 0.8648466427936468 1.0 16.470404917981128 2.5138724478688097 22.514322711933943 1.0164262655083605 1.0938282209244554 0.24146741318885645 0.0774750669743288 300.6308161830869 184170.1313736791 0.02518303709116658 0.02373050937930256 326.49192752921977 -2.5138724478688097 0.07740195541609496 DGQYLLTGGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGQYLLTGGDR 11 0 A0A494C1L5;P50851-2;P50851;A0A494BZW2;H0YAC6;A0A3B3IS13 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 95.138 0.018569 389680000.0 199790.0 295010.0 276920.0 276070.0 265310.0 289640.0 266970.0 205260.0 232100.0 232890.0 False True 198714.35283875559 304829.2295126889 315907.92896821065 311020.43369390507 299095.65588442766 269617.86853922193 254055.641175561 220577.5434891606 174902.06498065952 218026.76081283943 0.9114218460977724 1.3981275893667164 1.4489410739785071 1.426524122701131 1.3718300210916776 1.2366274100208727 1.1652498079978806 1.0116994017927499 0.8022045749273896 1.0 17.734145698074354 1.8674845617004214 1.5652048582931437 0.9021742162928085 1.3249447003372274 0.5336281360998096 0.15215657971323068 0.28359671575783046 1.3060421370401405 0.10854270659000576 0.04717104731974972 73.70289749673768 -1.8674845617004214 0.42277048404441897 DGRHPQGEQMYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGRHPQGEQMYR 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 140.14 3.5705e-05 266850000.0 42621.0 74557.0 67588.0 78874.0 60447.0 64614.0 70218.0 55336.0 76589.0 69055.0 False True 42391.53327163824 77038.58467434178 77103.80291457256 88859.44031286663 68144.56715256123 60147.386264995504 66821.28708119104 59465.45331051445 57714.66719002051 64647.85077904012 0.6557299703052505 1.1916650553109946 1.1926738783336455 1.3745149953488678 1.0540886716477633 0.9303849322164359 1.0336196219357625 0.9198365080033583 0.8927546158848105 1.0 15.980314787915049 2.995603822569884 24.979125377087236 0.9582140505823772 1.128543377191585 0.1339355419876117 0.17496168753473615 338.6433016646509 1924194.5195387558 0.05143002198320024 0.06007611737535425 989.9284881873134 -2.995603822569884 0.17032932660920774 DGSAFEDGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGSAFEDGLR 10 0 A0A3B3IRQ9;P55265-3;P55265-2;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 168.25 1.1618e-05 1466510000.0 2280100.0 2472700.0 2362100.0 2353400.0 2377300.0 2588700.0 2508100.0 2408000.0 2881400.0 2473700.0 False True 2267824.1949429275 2555002.3247212847 2694663.148258746 2651340.1987004625 2680035.06363895 2409749.2621443323 2386773.621127565 2587697.1875762423 2171317.5787818725 2315826.34815888 0.979272127526265 1.1032788908169013 1.163586013433627 1.1448786740026173 1.1572694411088387 1.0405569761567495 1.0306358346017994 1.1173969022476593 0.9375994795586058 1.0 21.14309564646711 2.7122375076706446 22.227694097538727 1.039889593209977 1.114255489831967 0.2851419222349444 0.06458357622209437 284.6577150035171 240368.3812763375 0.0213661446462961 0.020155402822317012 515.5104907197657 -2.7122375076706446 0.07436589662199 DGSDEPGTAACPNGSFHCTNTGYKPLYIPSNR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGSDEPGTAACPNGSFHCTNTGYKPLYIPSNR 32 1 K7ELL7;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;; 381.56 2.4365999999999984e-149 4834940000.0 1381210.0 1978720.0 2176980.0 2039500.0 2423020.0 2493580.0 2715580.0 2810670.0 2502930.0 2441240.0 False True 1373773.718826857 2044580.499038499 2483479.8613506304 2297700.4908853546 2731577.2346352823 2321204.6838559336 2584217.0208769925 3020416.467693071 1886116.4390436984 2285437.9731492847 0.6010986668493243 0.89461211507793 1.0866538013842695 1.005365500127388 1.1952095251446389 1.0156498277909345 1.130731637103236 1.3215919675697878 0.8252757069773677 1.0 21.124039234013555 4.870195422608365 1.2440522232989375 1.1070861820698927 0.24604497848548773 0.5535646206703339 0.12792716891656236 1.2971441281378218 1.4022175806051196 0.035617386510641544 1.5436290574300962 74164.3889057712 -4.870195422608365 -0.8610412035844051 DGSDVIYPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGSDVIYPAR 10 0 P25685;P25685-2;M0R080 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ; 171.99 8.966e-06 414480000.0 717220.0 824250.0 710190.0 763670.0 688460.0 852570.0 840510.0 741670.0 943560.0 809100.0 False True 713358.5672106339 851684.6629803523 810178.5789178595 860350.5436991507 776131.3001778792 793633.8426339064 799851.3202399925 797017.1815239487 711032.2810562316 757462.5452946399 0.9417740476304999 1.1243917844796691 1.0695955647585373 1.135832456724958 1.0246464396150141 1.0477532487434036 1.0559615458330869 1.0522199235790897 0.9387028909523867 1.0 19.530815026978008 1.3064602722758119 6.846889095163259 0.9699114588208833 1.060483053337046 0.3059331272093231 0.052282207526112304 0.21311402192300585 16.84604537950364 0.03403761467540472 0.012187113873976281 20.251643434752967 -1.3064602722758119 0.0905715945161627 DGSGDSHPDFPEDADIDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGSGDSHPDFPEDADIDLK 19 0 Q08752 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 0 102.33 0.00039445 120420000.0 187280.0 135290.0 126450.0 123080.0 129230.0 182640.0 171230.0 156000.0 232290.0 174750.0 False True 186271.70528876418 139793.04586546795 144253.06087689695 138661.9153803234 145686.67449377952 170014.52668831474 162946.95073787827 167641.51215194893 175045.24202652913 163597.3053889979 1.1385988592284673 0.8544947945998944 0.8817569490762416 0.8475806801989574 0.8905200128288734 1.03922571514279 0.9960246615946808 1.024720497402661 1.0699763153819104 1.0 17.319789460284046 2.736263086538882 24.876280335017785 1.0247599922261053 0.9123714601182681 0.29099273823372307 0.0798959806568747 230.89203093770706 2499942.510027083 0.024934865230286388 0.024569451249291167 544.8326011204043 -2.736263086538882 -0.11238853210783717 DGSGDSHPDFPEDADIDLKDVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGSGDSHPDFPEDADIDLKDVDK 23 1 Q08752 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 0 ; 122.01 4.0398e-05 303710000.0 382750.0 271750.0 219890.0 231540.0 222750.0 359520.0 379360.0 298770.0 624140.0 350640.0 False True 380689.3165275228 280795.03447365586 250848.60068185732 260852.94025966892 251115.89215731158 334667.22861904773 361008.9075040677 321065.7345233198 470329.0600475177 328261.85500199255 1.1597123172450605 0.8553995238708179 0.7641722510839241 0.7946489556579321 0.764986514061426 1.0195130001230766 1.0997589333121767 0.9780781093842627 1.43278621283811 1.0 18.32448758865854 2.5236222757701294 4.065538865676693 1.106172392307312 0.8578068542726156 0.3745922594488176 0.15733982234334243 0.2511082913988939 8.743518288974512 0.05394572453872863 0.048700141145347056 333.90450286766077 -2.5236222757701294 -0.2483655380346963 DGSGT(ph)PSRHS(ph)LSGS(ph)SPGMK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGSGTPSRHSLSGSSPGMK 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 DGS(0.027)GT(0.969)PS(0.003)RHS(0.964)LS(0.082)GS(0.54)S(0.414)PGMK;DGS(0.01)GT(0.989)PS(0.006)RHS(0.917)LS(0.325)GS(0.416)S(0.337)PGMK 142.45 2.6555e-05 1025940000.0 686880.0 607840.0 569930.0 599710.0 636350.0 798000.0 786030.0 778050.0 1057950.0 796960.0 True False 683181.9143995424 628071.5869529607 650171.1900796351 675633.2245103485 717385.4005580475 742836.1382899437 748006.7259738039 836112.0418578451 797232.3983037005 746097.3304882162 0.9156739831149047 0.8418091866673424 0.871429454993746 0.9055564159011816 0.9615171791173936 0.9956289989723746 1.0025591774793488 1.1206474111235956 1.0685367253385338 1.0 19.509004320806472 2.773366874093571 1.0288972667314722 1.070460301970031 0.8713936877918055 0.8021715956097553 0.03676326002087566 0.19873817457331552 0.4454431409345103 0.019563787681921185 0.018798774141844887 593.4264150973836 -2.773366874093571 -0.19906661417822547 DGSGT(ph)PSRHS(ph)LSGSS(ph)PGMK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGSGTPSRHSLSGSSPGMK 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 DGS(0.435)GT(0.563)PS(0.008)RHS(0.991)LS(0.043)GS(0.149)S(0.812)PGMK 93.966 0.00028548 0.0 260690.0 265900.0 260090.0 256050.0 268380.0 349800.0 322610.0 346450.0 421330.0 320970.0 True False 259286.47400538184 274750.3207600555 296708.4112571937 288465.9037466017 302556.60218711256 325619.14934062946 307004.1218101204 372303.858237454 317498.8670327501 300485.4198037578 0.8628920304177077 0.914354915920681 0.9874303100994691 0.9599996696511737 1.0068927882913834 1.0836437573353346 1.0216939045182953 1.2390080639539838 1.0566198760662115 1.0 18.19693546441776 3.2857650803471454 0.7471797441529549 1.1158708809778766 0.8854021010203132 0.532012981960764 0.06631856577332478 0.5175849667814599 0.6219101690212927 0.037164018215080134 0.0712822401889707 1930.923554496149 -3.2857650803471454 -0.23046877995756332 DGTAPPPQSPGSPGTGQDEEWS(ph)DEESPRK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGTAPPPQSPGSPGTGQDEEWSDEESPRK 29 1 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 DGTAPPPQSPGSPGTGQDEEWS(0.999)DEES(0.001)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.998)DEES(0.002)PRK;DGTAPPPQSPGSPGTGQDEEWS(1)DEESPRK;DGTAPPPQSPGSPGTGQDEEWS(0.99)DEES(0.01)PRK 270.73 3.1487999999999996e-71 5996090000.0 1649510.0 1323360.0 1403800.0 1308050.0 1307410.0 1854650.0 1811210.0 1687400.0 2154660.0 1790810.0 True False 1640629.2214377902 1367407.2376119883 1601442.8379516653 1473648.9958826127 1473900.9138738082 1726442.4108764958 1723594.852805889 1813322.3564435844 1623672.9139647915 1676518.9726104229 0.978592696081005 0.8156228828611869 0.9552190366555409 0.8789933307990355 0.8791435933342715 1.0297780335812958 1.0280795391907593 1.0815996633907172 0.9684786993114981 1.0 20.677037379050617 2.7328345336232522 24.369436973630457 1.031662580301989 0.8984749909234852 0.5890331368798587 0.049760695634383734 201.41253035960142 857181.878100336 0.014975225980041437 0.014488173805151034 540.5483345688023 -2.7328345336232522 -0.13318758937850383 DGTGVVEFVR ddPTM_BT-474_Trastuzumab_2h_R1 6 DGTGVVEFVR 10 0 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;;; 220.1 1.3965e-08 3951430000.0 3087650.0 3587920.0 3129730.0 3275710.0 3120790.0 3466360.0 3362040.0 3164430.0 4059290.0 3467430.0 False True 3071026.4354701648 3707341.7482565576 3570368.7798991743 3690414.550133885 3518204.1081284643 3226738.6921337433 3199405.28095997 3400575.8352499492 3058932.371199232 3246135.6487838225 0.9460561010815235 1.1420785048355966 1.0998828041079636 1.1368639358975998 1.0838130284070455 0.9940246007102795 0.9856043083592763 1.0475766274659497 0.942330420586482 1.0 21.63029185748447 2.753701329327801 8.0624641820997 1.0002936805745082 1.0892807486594018 0.37334425158215234 0.05617440574151086 0.2021501088637959 84.64274672377168 0.016931935668565802 0.01744347487934725 567.1544308557155 -2.753701329327801 0.08898706808489365 DGTS(ph)PEEEIEIER ddPTM_BT-474_Trastuzumab_2h_R1 1 DGTSPEEEIEIER 13 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 DGT(0.001)S(0.999)PEEEIEIER 191.57 3.6172e-06 198100000.0 298820.0 278750.0 224590.0 266040.0 255220.0 318670.0 303070.0 294760.0 397630.0 310940.0 True False 297211.18632202287 288028.02524206653 256210.31982872495 299720.63672230445 287720.7541925435 296641.0929684912 288409.34626016923 316756.48796095216 299639.41446902073 291095.5429908727 1.0210090586352327 0.9894621617449418 0.8801588550490395 1.0296297691225804 0.9884065940561825 1.019050617953956 0.9907721131587793 1.0881529985187168 1.0293507464606422 1.0 18.15113322473847 2.6288520299771307 1.102518303786288 1.0421549153390308 0.9730791143487069 0.1970915916800321 0.04469277173371862 0.6569162931977959 1.646930618690845 0.024478351951093345 0.0202928765287705 425.4534306796466 -2.6288520299771307 -0.06907580099032395 DGTTHQTSLELFMYLNEVAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGTTHQTSLELFMYLNEVAGK 21 0 P00966 P00966 ASS1 Argininosuccinate synthase 0 ; 133.09 1.0472e-05 696200000.0 706100.0 879490.0 789040.0 805100.0 891180.0 925430.0 891520.0 943170.0 1266710.0 1051090.0 False True 702298.4360550854 908763.2929870675 900129.9735413739 907025.5774512376 1004666.4905623018 861457.2023278966 848393.771662871 1013554.1347202158 954546.2935443828 984008.5363165784 0.7137117312863835 0.9235319201486045 0.9147582976371469 0.9217659643954821 1.0209936738181682 0.8754570418185333 0.8621813128152813 1.0300257541608684 0.9700589561118229 1.0 19.908311305497442 5.358812166043801 1.3310447531411027 0.9520657887432656 2.1169116285987783e-16 0.6240486913289942 0.054508454674207375 4.049918901289543 1.9476908331272844 0.015274588381409018 7.830975288435148 228461.0487251114 -5.358812166043801 -0.9520657887432654 DGVADVSIEDSVISLSGDHCIIGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DGVADVSIEDSVISLSGDHCIIGR 24 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;;;; 334.55 5.916999999999997e-87 1908656000.0 927013.5 1092663.7 846547.0 854206.7 874338.1 1063256.6 909310.9 907650.4 1077460.6 997243.1 False True 922022.5623168834 1129032.3507253446 965733.4592815683 962349.1806362139 985679.8744270648 989756.1738788148 865324.057862032 975383.8818033435 811934.872362347 933598.1915752274 0.9876010586108646 1.2093343377415589 1.0344208761288625 1.0307958919805489 1.055785972297099 1.060152196962629 0.9268698950690993 1.044757681200745 0.8696834245066368 1.0 19.83244224091483 2.5112358479968586 0.7935829139893185 0.9586272916415495 1.0837115216816846 0.3000637977820534 0.07116605138511564 0.7828978593626763 1.0038743765407117 0.049460278450778404 0.0376654232387607 324.51580108331774 -2.5112358479968586 0.12508423004013514 DGVDLMESYVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGVDLMESYVDR 12 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 0 ; 170.99 9.223e-05 135507000.0 90849.0 104358.0 95146.0 97892.0 98670.0 100429.0 105989.0 91551.0 118267.0 96629.0 False True 90359.8790782728 107831.49294425672 108541.72977614266 110285.11716290702 111235.03963709043 93486.57961443687 100861.90715270092 98383.00050655828 89121.68254660776 90462.05449175093 0.998870516328065 1.192008003246153 1.1998592159549106 1.2191312454987822 1.229632029275145 1.0334341856337315 1.1149637018458203 1.08756097857063 0.9851830477134985 1.0 16.465025141066004 2.729096857163906 24.968919374508904 1.0585985378884 1.1738611948246214 0.4241985742486635 0.07089388697405313 706.765854401121 1864706.948708765 0.023058745420384993 0.022011341934217277 535.9161652073435 -2.729096857163906 0.1152626569362214 DGVFCLLSDDHGASWR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGVFCLLSDDHGASWR 16 0 Q99519;E9PIF4 Q99519 NEU1 Sialidase-1 0 ;; 266.42 3.4304e-27 473487000.0 273406.0 418534.0 392790.0 384599.0 380689.0 349439.0 386638.0 374273.0 359555.0 338714.0 False True 271934.01247426204 432464.65118085436 448091.41780811676 433289.19396617624 429167.4876295161 325283.1044209269 367934.8428394078 402203.15177978534 270947.48804015986 317096.9825323554 0.8575736366287083 1.3638245552738026 1.4131052721777166 1.366424841087742 1.3534265895631015 1.0258158302964495 1.1603227501600872 1.268391608673684 0.8544625239772295 1.0 18.274564623381814 2.740820224436808 24.971780620114743 1.1021356263975108 1.289245521058961 0.23379118312377667 0.18053944575913092 335.05264492865246 3702808.7494303966 0.05680953379367062 0.057693297670807484 550.5797375529937 -2.740820224436808 0.18710989466145023 DGVGMVEYLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DGVGMVEYLR 10 0 Q13242;H0YIB4 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 ;;;;; 175.91 6.1795000000000016e-06 3098340000.0 1791519.0 1900320.0 1858250.0 1868240.0 1678930.0 1930320.0 1974304.0 1733542.0 2227590.0 1957580.0 False True 1781873.6607604737 1963571.0024323019 2119875.4478014503 2104758.992445038 1892731.7837022436 1796881.5218845159 1878799.3729463043 1862907.7067879129 1678630.2926767245 1832645.5684314421 0.9722958391161123 1.0714406736666047 1.156729639553734 1.1484812059139713 1.0327865989506249 0.9804850173088643 1.0251842501953965 1.0165128156135352 0.9159601406798266 1.0 20.805496366599098 3.023975702737775 7.6097725394167925 0.9952395638439834 1.0912706536270762 0.4197369211859241 0.05475889888114963 0.1917970249235344 45.43199699329507 0.016742832738101163 0.01980925288858843 1056.7583856121908 -3.023975702737775 0.09603108978309283 DGVIEASINHEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGVIEASINHEK 12 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;; 163.51 5.9119e-05 5182230000.0 6919740.0 8017300.0 7652300.0 7596200.0 7504500.0 8332600.0 8715600.0 7829200.0 10403800.0 9193400.0 False True 6882484.8886953825 8284150.983939816 8729677.325016038 8557878.141144069 8460153.592343636 7756586.974830554 8293993.131174753 8413454.659872053 7839922.893777636 8606669.341134269 0.7996687935717004 0.9625269259906355 1.0142921702933179 0.9943310009881512 0.9829764868402248 0.9012298099752857 0.9636704748879886 0.977550586225176 0.910912524117537 1.0 23.037023612443836 4.737097768326153 6.240219866790821 0.9680319456676998 0.7958349503159402 0.6804923071479686 0.034517172600364916 0.07049689511024945 14.926237295361155 0.00835771698232193 0.05170622102430636 54588.07358713866 -4.737097768326153 -0.17219699535175959 DGVLEEQIER ddPTM_BT-474_Trastuzumab_2h_R1 3 DGVLEEQIER 10 0 Q09161;X6R941 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 ;; 160.53 6.803899999999999e-05 557820000.0 576214.0 573450.0 494750.0 507424.0 483430.0 587740.0 547925.0 505421.0 723760.0 607570.0 False True 573111.7278473944 592536.9365921543 564406.4995559097 571663.8263726458 544991.9449858997 547110.9171911421 521419.7744732342 543138.0814958357 545399.0458871276 568794.3624331527 1.007590380108152 1.0417419294689159 0.9922856779760035 1.005044817826988 0.9581528597691571 0.9618782346061685 0.916710517739201 0.9548935737907699 0.9588685857469718 1.0 19.117547640290695 3.3634683316116445 1.5602792121985867 0.9516470398912937 1.0195013951320542 0.5650087007716136 0.02250061161162658 0.23881107208989086 1.1946332779906477 0.007005221660229624 0.011358649614539256 2309.236065228097 -3.3634683316116445 0.06785435524076044 DGVPEGAQLQGPVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGVPEGAQLQGPVHR 15 0 P16989;P16989-3;P16989-2 P16989;P16989-2 YBX3 Y-box-binding protein 3 0 ; 211.75 1.2208e-09 1719420000.0 1399450.0 1452940.0 1354590.0 1329530.0 1321440.0 1552160.0 1403950.0 1320140.0 1696570.0 1497440.0 False True 1391915.5166935124 1501300.2295792217 1545304.49769265 1497848.3616802187 1489717.5512114826 1444862.8325916275 1336035.5748901719 1418655.55033509 1278473.0563732777 1401872.0971771162 0.9928976541414493 1.0709252524551414 1.1023148979171187 1.0684629251815236 1.062662959203808 1.0306666603187835 0.9530367125363889 1.0119721714925134 0.9119755353913375 1.0 20.41892329728484 2.4265421857088394 3.668298113845025 0.9742018803657978 1.062254709219871 0.5788994240807692 0.036131426217201244 0.1670672184250748 4.683434547277581 0.012916076804220088 0.010835475571114627 267.0190126613074 -2.4265421857088394 0.08805282885407328 DGVVEITGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DGVVEITGK 9 0 P04792 P04792 HSPB1 Heat shock protein beta-1 0 ;;; 172.25 0.00013106 2176350000.0 3314640.0 3048050.0 2569000.0 2462450.0 2401530.0 3390710.0 3442820.0 3094130.0 4292430.0 3481470.0 False True 3296794.346531122 3149502.5016648686 2930692.8698517047 2774195.9175193105 2707350.610516488 3156318.198572797 3276277.6437504087 3325029.6922737802 3234618.1421151785 3259279.603963575 1.0115101332582592 0.966318599310962 0.8991842449747854 0.8511684343207746 0.8306592067842563 0.9684097659907521 1.0052152751074694 1.0201731966261034 0.9924334623459719 1.0 21.63612169125295 2.4976236837460584 9.562413239994402 1.0050852728400552 0.9095836622383507 0.4478339689118709 0.04875599454334132 0.35366530899054816 158.67261426322807 0.017956784570970726 0.016374110297444722 314.50219709274023 -2.4976236837460584 -0.09550161060170448 DGVVRPLK ddPTM_BT-474_Trastuzumab_2h_R1 6 DGVVRPLK 8 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;; 109.71 0.0032514 24393400000.0 22444890.0 21055160.0 19537810.0 17910740.0 18807330.0 24791090.0 23958060.0 21629510.0 28765500.0 24589800.0 False True 22324049.20610173 21755968.27248701 22288563.822311167 20178237.84757043 21202331.995721497 23077340.300248664 22799117.109123 23243613.86862631 21676627.96295202 23020457.91161305 0.9697482687709698 0.9450710475012686 0.9682067970970869 0.8765350335360265 0.9210212966713243 1.0024709494856276 0.99038503911 1.0096938105171525 0.9416245344110591 1.0 24.456413195346443 2.7368048524285546 24.999251877411645 0.991240839286129 0.9350866774764514 0.43363512496620105 0.030050036887111636 148.24684823725437 2110781.235122874 0.009783061251673225 0.009657602409181808 545.5126832202607 -2.7368048524285546 -0.056154161809677694 DGVYFLYEALHGPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGVYFLYEALHGPPK 15 0 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 ; 157.75 1.8954e-06 802820000.0 1355740.0 1267960.0 1122240.0 1156930.0 1042960.0 1459450.0 1390650.0 1324470.0 1802390.0 1392880.0 False True 1348440.8464768736 1310163.282101993 1280241.6373150556 1303397.219377296 1175774.77389176 1358561.6566757604 1323378.9467011066 1423308.676922386 1358215.1352886318 1303985.2058954374 1.0340921356932948 1.0047378422535962 0.9817915353080426 0.9995490849777413 0.9016780010815874 1.0418535812627152 1.0148726693508394 1.0915067674751802 1.041587840987778 1.0 20.31449607117663 2.52245815979314 24.99997207976846 1.04605204936141 0.9847577785752557 0.3121261053966119 0.03891261755983898 469.0200155983286 258629.49322617188 0.012669239411220078 0.011944268206497027 333.01067830253083 -2.52245815979314 -0.06129427078615435 DGVYFLYEALHGPPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGVYFLYEALHGPPKK 16 1 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 169.09 3.7308e-09 819240000.0 955690.0 890910.0 877300.0 814210.0 818080.0 1074700.0 1108900.0 971590.0 1546000.0 1152400.0 False True 950544.671227142 920563.4007835311 1000816.2143717003 917288.9025171688 922257.6388599488 1000408.5185716822 1055258.2705906292 1044094.9794340536 1165009.0153386474 1078852.8453807214 0.8810698097493546 0.853279856214931 0.9276670295275697 0.8502446894816896 0.8548502632298189 0.9272891320211918 0.978129941547528 0.9677825700738623 1.0798590561510009 1.0 20.041066665181116 2.104545793086548 1.2216240627602653 1.025446726305202 0.8734604437638359 0.7847938325996013 0.03324680768943542 0.2109635817021333 0.5911518670825856 0.023008990616595087 0.011638780310257696 127.21718839703185 -2.104545793086548 -0.15198628254136615 DGWENVPPFDHPLIWK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGWENVPPFDHPLIWK 16 0 Q96GA7;F8VYZ3;H0YID3 Q96GA7 SDSL Serine dehydratase-like 0 ; 148.41 9.3451e-07 600530000.0 752420.0 857540.0 737370.0 710870.0 754770.0 876290.0 883130.0 762960.0 958720.0 873500.0 False True 748369.0543217208 886082.7005061224 841185.286665064 800866.0691128577 850885.4856277175 815714.1348647794 840409.6280157829 819895.9494323785 722456.3021898239 817752.4821590259 0.9151535099543577 1.083558558167493 1.0286551310051313 0.9793502148699265 1.0405171542631262 0.9975073786521995 1.0277066060343074 1.0026211687767592 0.8834657404920356 1.0 19.64130470782537 1.4023172485506568 9.940852784780839 0.9416280190611653 1.0132335267056547 0.2340337888527012 0.04893206467304038 0.45165327126536603 55.874849642575235 0.029356612741370667 0.010871629879415723 25.253248279023982 -1.4023172485506568 0.07160550764448936 DGWGGYGSDKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DGWGGYGSDKR 11 1 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ;;; 151.1 5.3839e-05 3737390000.0 3164790.0 3301310.0 3013100.0 2778260.0 2541250.0 3351260.0 3373550.0 3014660.0 4388900.0 3523260.0 False True 3147751.1222812235 3411192.10766596 3437318.289665305 3129987.431138581 2864863.1243311693 3119595.2842174866 3210358.498287504 3239629.237333302 3307314.4032469545 3298402.530385359 0.9543259481775456 1.0341952130589178 1.042116072250198 0.9489404044244709 0.8685607950938788 0.9457897438166887 0.9733070687137847 0.9821812854827059 1.0027018754622876 1.0 21.65333604243365 3.7245203765305925 24.778368149031373 0.9574695316322293 1.0126106920790734 0.2277639361761743 0.04190919048825963 977.0010160331076 1724223.0994421283 0.01190886405487308 0.018560456407165877 5302.984729581578 -3.7245203765305925 0.05514116044684414 DGWHYGESEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGWHYGESEK 10 0 Q9UQB8;Q9UQB8-2;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;Q9UQB8-6;B4DWA1;I3L3C6 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 0 ; 129.89 0.00029116 247600000.0 671490.0 709500.0 655060.0 599920.0 570960.0 764280.0 774200.0 682560.0 902110.0 732550.0 False True 667874.7724495529 733115.2785981933 747286.7541164104 675869.8104888164 643668.3716549431 711447.1225216019 736748.9882687922 733496.0931694503 679797.0781546878 685798.0318323915 0.9738651052483349 1.068995891748733 1.089660103164377 0.985523111932754 0.9385684148656979 1.037400356225401 1.0742944045789462 1.069551178514779 0.9912496778947153 1.0 19.38742423833456 2.4953788931018988 24.721685115427242 1.0455003640989051 1.0144992910910355 0.03130678100237161 0.04826617828753775 1856.2606581841776 2513462.724173721 0.016816652312506414 0.015561828406116657 312.88078538646573 -2.4953788931018988 -0.031001073007869584 DGWLHTGDIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DGWLHTGDIGK 11 0 E7EPM6;P33121-2;P33121;P33121-3;B7Z3Z9;H0Y9U7 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ; 196.11 6.158599999999999e-08 634710000.0 2032900.0 1923500.0 1664410.0 1532450.0 1640620.0 2256800.0 1891440.0 1830180.0 2507900.0 1955600.0 False True 2021955.092276425 1987522.534719696 1898744.4606889382 1726458.0128743623 1849543.2322834048 2100792.7279357696 1799943.8211975284 1966757.325065732 1889861.649138285 1830791.9337266083 1.1044155564748972 1.085608090196279 1.037116466219081 0.9430115902685497 1.010242178923428 1.147477596571867 0.9831503995834808 1.0742658894407318 1.0322645704973363 1.0 20.804036410029386 4.280327156953609 4.138416359791726 1.031227894286651 1.098849340997373 0.21052087699920408 0.05189826704001409 0.3352360192115196 12.04974015400136 0.013043732513153966 0.037499209385428625 19068.96655117916 -4.280327156953609 0.0676214467107219 DGWPAMCIHGDK ddPTM_BT-474_Trastuzumab_2h_R1 6 DGWPAMCIHGDK 12 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;;; 143.86 6.256e-05 8085000000.0 11056520.0 10043920.0 9512820.0 9232500.0 9393310.0 11728290.0 11435030.0 10745890.0 15601800.0 11362370.0 False True 10996992.92481484 10378225.805522142 10852142.369086295 10401333.553370457 10589492.349989662 10917540.917725014 10881873.912843313 11547802.878323771 11756945.443409128 10637213.818785636 1.0338226825330732 0.9756526457326529 1.0202053426735758 0.9778249953950717 0.9955137247770938 1.0263534327423514 1.023000392605214 1.0856040947423664 1.1052654993778552 1.0 23.34261698270114 2.0323426726751106 2.2179221445980635 1.07148700528626 1.0014017714975139 0.3970856177034163 0.0314185697997969 0.2518750750553956 2.343615594113265 0.015884270851409327 0.008777269828870865 107.7314915377002 -2.0323426726751106 -0.07008523378874609 DGWPAMGIHGDK ddPTM_BT-474_Trastuzumab_2h_R1 7 DGWPAMGIHGDK 12 0 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;;;;; 111.39 0.0013872 5259200000.0 4951810.0 4675410.0 4566910.0 4098500.0 4127260.0 5053570.0 5230600.0 4730430.0 6727670.0 5232500.0 False True 4925150.005157811 4831028.1955049755 5209891.23170668 4617369.679771328 4652842.0968133975 4704228.600724194 4977575.895167586 5083438.707236818 5069725.874659352 4898557.370231371 1.0054286666290861 0.9862144771159012 1.0635562346104774 0.9425978570407635 0.9498392577963483 0.9603293878544493 1.0161309787686497 1.0377419968844244 1.0349426354518527 1.0 22.223925506051682 2.0595826207870047 7.108490573697557 1.028082255680157 0.9849149488488944 0.2326439218779882 0.03341226441853094 0.3083715557765874 30.105042099615165 0.013327181040765006 0.009784534284438809 114.70507171926258 -2.0595826207870047 -0.043167306831262575 DGWS(ph)LDRDR ddPTM_BT-474_Trastuzumab_2h_R1 3 DGWSLDRDR 9 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 DGWS(1)LDRDR;DGWS(1)LDRDR;DGWS(1)LDRDR 98.898 0.007310600000000001 835350000.0 858820.0 839990.0 705423.0 729240.0 857820.0 967760.0 889170.0 813520.0 1169610.0 1080480.0 True False 854196.2085438714 867948.5593653215 804740.4267533672 821561.7092293387 967058.2923025127 900861.029061999 846157.4501407425 874228.9933708567 881375.2874710443 1011522.8413545319 0.8444655657997954 0.8580612556440645 0.7955731634055222 0.812202824929968 0.9560419723271135 0.8905988003747444 0.836518381540106 0.8642701455956993 0.8713350321291738 1.0 19.948097467309196 -4.9999999999605285 0.21425403908592652 1.6930198029786387 0.8390231025989864 0.5304060914384268 0.040814143834975405 126.29217503068212 1.261516690317827 37.6901048908139 0.0882143995754984 1.0000000000908865e-05 4.9999999999605285 -0.8539967003796524 DGWSLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGWSLDR 7 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 ; 131.3 0.0080952 367000000.0 490660.0 642410.0 613670.0 544680.0 525390.0 556880.0 584930.0 489550.0 716230.0 555960.0 False True 488018.3410774508 663792.2285049546 700069.4018847394 613636.432152702 592295.3022694946 518384.1963545163 556634.701250407 526082.7068845298 539724.7134902969 520478.1568186969 0.9376346244006679 1.2753507900547298 1.3450504938838408 1.1789859461219538 1.1379830152522894 0.9959768523678699 1.0694679381988068 1.0107680792986384 1.0369786059596433 1.0 18.989478092888312 2.952782648568711 2.8815857995171856 1.0261006660496594 1.201523396642092 0.36645523287683035 0.10021287481359417 0.27783950103228 4.595754661843714 0.032134178245265835 0.03617881739198202 896.9797705342484 -2.952782648568711 0.17542273059243252 DGWSLWYSEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DGWSLWYSEYR 11 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 182.64 1.3254e-05 43254000.0 170935.0 136017.0 108630.0 95611.0 83933.0 106254.0 96340.0 109229.0 138138.0 112702.0 False True 170014.70495266374 140544.24362098708 123924.15977111369 107715.34279678336 94621.370040133 98908.91107501209 91679.66614546052 117380.22263362347 104095.74085436611 105509.26187096332 1.6113723282472574 1.3320559837947796 1.1745334729255483 1.0209088840799403 0.8968062932319051 0.9374429251147317 0.8689252916732917 1.112511077721103 0.9866028726622509 1.0 16.687010122362764 4.462449063399113 1.18741802122412 0.9725575467582459 1.7344964302493833 0.9081039286918382 0.06578562879436564 0.2922287872937095 0.49205025926100543 0.021497423228338225 0.24511445633960502 29003.410097603642 -4.462449063399113 0.7619388834911374 DGYDYDGYR ddPTM_BT-474_Trastuzumab_2h_R1 5 DGYDYDGYR 9 0 J3KTL2;Q07955;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;; 209.84 1.8054e-05 32792000000.0 25022200.0 26925500.0 24307300.0 25664000.0 23977800.0 26210300.0 25838600.0 23980600.0 31681200.0 26134200.0 False True 24887483.25542776 27821698.99069153 27729556.557160914 28913059.768610783 27031230.702444818 24398443.653409667 24588688.20496255 25770154.143019438 23873792.76633037 24466292.981385715 1.017215124267599 1.1371440296189805 1.133377932580875 1.1817507372534215 1.1048355679796094 0.9972268243485979 1.0050026059799888 1.053292142075864 0.9757830000848053 1.0 24.544292191762462 2.803760673942853 5.25284365336187 1.0130689011657854 1.1221026749446936 0.6112167427934646 0.04306343405985343 0.1517170247951088 8.341847657091803 0.013487424229519561 0.014237065693343385 636.4446995565623 -2.803760673942853 0.10903377377890822 DGYNYTLSK ddPTM_BT-474_Trastuzumab_2h_R1 6 DGYNYTLSK 9 0 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 0 ;;;;; 183.67 0.00010445 4718360000.0 3603800.0 3519690.0 3606070.0 2935140.0 2719920.0 3641730.0 3761060.0 3312460.0 5021660.0 3597630.0 False True 3584397.541219824 3636840.753952469 4113773.311477671 3306728.423053317 3066285.6897711093 3389985.776810318 3579123.159155549 3559652.5855310573 3784139.179796552 3368026.1733139954 1.0642427810152462 1.0798136851691897 1.2214196386217189 0.9818000968203985 0.9104102913648126 1.0065200216287855 1.0626767652562044 1.0568957610054763 1.1235480323103069 1.0 21.683471919119096 3.710697395718502 24.944244436878442 1.0222591442629543 1.1176242528760147 0.33397340936954123 0.06560161844787137 883.6645389468696 791091.1546942557 0.01878943783299501 0.029114276549969235 5136.856050567891 -3.710697395718502 0.09536510861306047 DGYSYGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DGYSYGSR 8 0 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 125.58 0.0029213 647820000.0 463960.0 518610.0 460160.0 454660.0 473170.0 489010.0 437320.0 432420.0 549080.0 509620.0 False True 461462.09091080166 535871.6203436345 524946.5282175792 512219.9093826596 533425.3948016836 455205.8897057206 416165.16087536584 464689.3761842686 413766.5912950484 477095.6152923674 0.967231884174862 1.1231954416836314 1.1002962747747922 1.0736210792228047 1.1180681140295052 0.9541187869160511 0.8722887981696017 0.9739963254525067 0.8672613581692413 1.0 18.86391890185099 2.6444497528051536 5.233262434446855 0.9280244906883501 1.079937620606664 0.6248477777807271 0.055508068428281016 0.13634662096959926 5.909464610574064 0.017138679182689156 0.016136631009722246 441.01133584522427 -2.6444497528051536 0.15191312991831385 DGYWFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DGYWFLK 7 0 Q9Y2H0-3;Q9Y2H0;Q9Y2H0-1;A0A0B4J2C2;F8WF49;A0A087X246 Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 0 110.35 0.015875 304900000.0 366420.0 379120.0 402630.0 341060.0 326130.0 457700.0 384580.0 333520.0 436990.0 411500.0 False True 364447.23543308914 391738.78001712007 459316.8042773029 384238.16103033005 367660.72237604466 426060.2763099082 365976.3961617313 358408.9559802438 329299.6698659994 385237.717697125 0.9460320697871505 1.0168754564294928 1.1922944799460655 0.9974053509797273 0.9543736386297995 1.1059671904838717 0.9500014649382358 0.9303579050429999 0.8547960252554911 1.0 18.555389435330234 2.0738165515275626 7.314105137500048 0.9254155824681912 1.0362117222219027 0.30772370492556467 0.07518580220479094 0.26998389780835774 22.49848708972273 0.028618730871420032 0.02106185617001711 118.5267978439192 -2.0738165515275626 0.1107961397537115 DHAATTAGAASLAGGHHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DHAATTAGAASLAGGHHR 18 0 P29083;C9IYL4 P29083 GTF2E1 General transcription factor IIE subunit 1 0 78.441 0.0068891 16237000.0 12938.0 17686.0 16202.0 16242.0 15701.0 14029.0 16360.0 10815.0 17009.0 13099.0 False True 12868.343245546928 18274.667818587237 18483.100769691453 18298.23553467022 17700.429282881927 13059.208250713793 15568.604298730877 11622.070217457247 12817.359858923055 12263.01060538189 1.0493624819911167 1.4902268624449366 1.5072237450059562 1.4921487164530087 1.4433999816581506 1.0649267680631764 1.2695580881173056 0.9477338470503032 1.045204988512191 1.0 13.582025587962638 2.4683644394143087 1.4807361479006453 1.024939980927962 1.4133244494020472 0.5300622365312717 0.15127957938949022 0.30197269475151595 1.3408523305659823 0.07351940269267944 0.05507355611835333 294.0115823385343 -2.4683644394143087 0.38838446847408514 DHAEQQHIAAQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHAEQQHIAAQQK 13 0 X6R8P6;Q9NRY2 X6R8P6 INIP SOSS complex subunit C 0 ; 139.48 2.2488e-05 301630000.0 354810.0 328820.0 301230.0 285820.0 307240.0 371040.0 363020.0 92012.0 410350.0 241970.0 False True 352899.7423830972 339764.57492411224 343640.56566190266 322004.78269421513 346365.19284584717 345390.8781342112 345459.3357289293 98878.40266746888 309224.7409082886 226527.26743906052 1.557868712110046 1.4998837833750605 1.5169942654005106 1.421483542950694 1.529022076510171 1.524720984095775 1.5250231887508352 0.43649669103993743 1.3650663092533661 1.0 17.78932519460409 1.7677334335829342 24.999999999730026 0.8822076896720983 1.508350102893736 0.6019393558647806 0.21372960770809457 12.436944506159369 10664.016949377175 0.09047293749996534 0.05017959122336802 58.577850806924324 -1.7677334335829342 0.6261424132216378 DHAGVMGESNR ddPTM_BT-474_Trastuzumab_2h_R1 3 DHAGVMGESNR 11 0 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 P52306-4 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 0 ;; 92.112 0.010239 440101000.0 240385.0 237774.0 208767.0 217012.0 203881.0 214143.0 208654.0 119732.0 246328.0 187430.0 False True 239090.7938692842 245688.16385258187 238159.57896470628 244485.69694925807 229844.03685263658 199339.7984484003 198560.60888431518 128667.00982677682 185623.7650260918 175468.05693310368 1.3625887130011156 1.4001874081631236 1.3572816792261135 1.3933344975858883 1.3098910472363836 1.1360460811644915 1.1316054463406717 0.7332788205196258 1.0578778170254655 1.0 17.42084889357841 2.4051419166530743 1.4457835578816405 0.9109294910583184 1.377271340280115 0.7974751749041052 0.09289630387019293 0.15747518317760167 0.6638154604527907 0.04748864182563974 0.03318583253217386 254.1803168016527 -2.4051419166530743 0.46634184922179667 DHAISLSEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DHAISLSEPR 10 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 ;; 151.15 2.0316e-05 753030000.0 373011.0 528170.0 470040.0 493720.0 493280.0 461830.0 482970.0 320116.0 524740.0 408488.0 False True 371002.7502214178 545749.8191644929 536217.5463390801 556224.9013777473 556096.2841003755 429904.7791308832 459606.8959754307 344004.681436111 395424.85815575754 382417.9461158283 0.9701499471707508 1.4271030549366372 1.402176733036133 1.4544947668571904 1.454158440388524 1.124175221109189 1.2018444757721258 0.8995516160528655 1.0340122951133408 1.0 18.544790702161325 2.224161336368895 1.6597379728608428 0.9778573593304287 1.349803948823963 0.4967288710605827 0.14848940110150524 0.2887977976291601 1.5744820593388533 0.07988073270591338 0.048465239972377276 167.55652173478754 -2.224161336368895 0.3719465894935343 DHALLEEQSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DHALLEEQSK 10 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ;;; 211.64 5.5158e-08 2702170000.0 5534100.0 4272810.0 3815910.0 3236680.0 3368170.0 4714800.0 4042000.0 2543680.0 5536100.0 3945580.0 False True 5504305.020496319 4415027.89788181 4353156.9595157 3646443.356135721 3797086.4847923354 4388876.9734453885 3846473.0180605226 2733502.318145317 4171802.334939384 3693769.7064190134 1.4901592297243023 1.195263443254028 1.1785133631776792 0.9871875200554466 1.0279705521959799 1.1881837045277677 1.0413407775195465 0.7400305204179489 1.129415926415133 1.0 21.816662491474485 7.999999961541129 0.4833089768408571 0.9688238569126554 15.506514254282928 0.6094734362915026 0.11471877150307279 67.20202872256036 0.746380858049295 0.06718590865220689 983.1676609375784 99999991.14451814 -7.999999961541129 14.537690397370273 DHAPDRPFVCPDCGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHAPDRPFVCPDCGK 15 1 Q9BWE0;Q9BWE0-4 Q9BWE0 REPIN1 Replication initiator 1 0 ; 108.63 0.00063887 494780000.0 772740.0 831160.0 741060.0 698080.0 651770.0 903070.0 857820.0 512370.0 1157190.0 774680.0 False True 768579.6536994851 858824.6581531708 845394.80659101 786456.8564242444 734769.0461565469 840642.8964981197 816323.969409371 550605.6511621426 872016.030051572 725239.2591630846 1.0597601329338056 1.1841949360880462 1.165677114014185 1.08441020875208 1.013140197352884 1.1591249175730078 1.1255926359411332 0.7592055231504338 1.202383929212362 1.0 19.46809749861824 DHASIQMNVAEVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHASIQMNVAEVDK 14 0 Q8WVC2;P63220;Q9BYK1 Q8WVC2 RPS21 40S ribosomal protein S21 0 ; 131.24 5.740600000000001e-05 1382950000.0 584040.0 838610.0 873670.0 895730.0 958210.0 1180290.0 1069070.0 726230.0 1079970.0 1083000.0 False True 580895.5935329441 866522.6268995488 996675.1419242279 1009129.326158735 1080232.3637443646 1098699.3304038064 1017354.9998560037 780424.9703212178 813825.8643565836 1013882.0127970512 0.5729420052836286 0.854658250134082 0.9830287245896061 0.9953123868671812 1.065441885850474 1.0836560038902012 1.0034254351247156 0.7697394375980862 0.8026830085597811 1.0 19.951458342516936 4.700291641979846 2.5812762462780157 0.9557724243066581 0.5107210092623488 0.5962796839285807 0.09668030034168695 0.357345259881653 3.2624489116702033 0.028224061280668785 0.3323735171258913 50152.39091597649 -4.700291641979846 -0.44505141504430934 DHASIQMNVAEVDKVTGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DHASIQMNVAEVDKVTGR 18 1 Q8WVC2;P63220;Q9BYK1 Q8WVC2 RPS21 40S ribosomal protein S21 0 ;;;; 283.76 1.0597999999999997e-39 2524610000.0 927639.0 1784120.0 1855090.0 2061270.0 2156710.0 2297530.0 2449530.0 1560280.0 2369260.0 2258960.0 False True 922644.6946943827 1843503.3556766834 2116270.547268662 2322226.5706532276 2431354.234678317 2138707.1589038777 2331036.875786688 1676716.0165413017 1785387.6194574677 2114791.238807043 0.4362816895415398 0.871718835338379 1.000699505669625 1.0980878528526528 1.1496899505077613 1.011308879882785 1.1022538929665842 0.7928517887596034 0.8442382333986818 1.0 21.0120838243466 4.735005203851631 2.494573134370934 0.9959516570179093 0.3150486934397961 0.7216888417228313 0.1049831548567073 0.3061344739865358 2.3999740139674635 0.0297729201097365 0.4421088341805698 54325.68409259589 -4.735005203851631 -0.6809029635781132 down DHAVVVGVYRPPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHAVVVGVYRPPPK 14 1 P22087 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 90.412 0.0034624 737390000.0 1308500.0 1359000.0 1235800.0 1113100.0 1197900.0 1476700.0 1419900.0 732330.0 1786700.0 1275200.0 False True 1301455.1813880175 1404233.4934671512 1409789.8982338405 1254018.3458712858 1350445.4644904302 1374619.204777892 1351214.0124552539 786980.1832963895 1346391.7255534036 1193815.6442463538 1.09016428764394 1.1762565687884183 1.1809108927566698 1.0504288094355954 1.131201011646112 1.1514501517909643 1.1318447860584575 0.6592141651764027 1.1278053961199093 1.0 20.18714863401172 1.8099793079366473 24.999999960096446 0.8915925415297463 1.1318086738882902 0.3752527402881123 0.11605091085196231 113.52734978148959 39747.62785355584 0.04531906286024367 0.02900674535385786 64.5623467418967 -1.8099793079366473 0.2402161323585439 DHDKPHQQSDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DHDKPHQQSDK 11 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 0 ;; 158.42 1.9264e-05 99696000.0 207638.0 155317.0 134618.0 131564.0 145072.0 148974.0 152422.0 43806.6 205064.0 80815.0 False True 206520.10007875034 160486.6324538907 153571.0442793682 148219.98891043905 163546.05929088866 138675.77802707526 145048.7655514156 47075.67093740755 154528.72491682047 75657.31751079761 2.729677800819152 2.1212308040261467 2.0298240716431817 1.9590965393305872 2.161668754215979 1.8329460069382424 1.917180919488913 0.6222223108913296 2.0424822079472555 1.0 16.207192004965606 2.817065390909478 0.33112470047861214 0.9559797037788774 2.706739009573878 0.5233534147275669 0.3941832564885512 1.6300393974492748 0.3510915826188903 0.4882527063550042 1.0402699390135157 656.2440683089098 -2.817065390909478 1.7507593057950004 DHDTFLAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHDTFLAVR 9 0 Q12907;D6RBV2;D6RDX1;D6RIU4 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 0 ; 158.76 6.657e-05 194970000.0 77423.0 131479.0 129546.0 102307.0 89431.0 98866.0 119576.0 33664.0 122469.0 79968.0 False True 77006.16317050392 135855.19903426614 147784.95076598262 115259.05571022701 100819.50775093384 92031.62612553075 113791.65205532055 36176.17862232829 92288.15595052313 74864.37377595076 1.0286089268703824 1.8146842374030239 1.9740357570914013 1.5395714930464366 1.34669539950551 1.2293113731366674 1.5199706658319059 0.48322288423321363 1.2327379672835723 1.0 16.191991716333227 2.3461558087395575 1.1025663346023056 0.8902379979615772 1.6096613863425215 0.3582734552729979 0.32683943283082084 0.4760770331311363 1.1365055916046567 0.21170141931673334 0.13207684430238895 221.8992369108547 -2.3461558087395575 0.7194233883809443 DHEDYDPQTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHEDYDPQTVR 11 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 ; 134.13 0.00014726 908370000.0 416670.0 444610.0 383820.0 397680.0 410450.0 465830.0 462990.0 184079.0 466710.0 328890.0 False True 414426.6950163886 459408.5750775797 437858.51977675455 448026.2472249508 462718.3745722494 433628.26854587015 440593.40490644367 197815.90971422198 351695.57409359614 307899.9586231044 1.3459784043806318 1.4920709217760393 1.422080476187171 1.45510330442549 1.502820515603433 1.4083414316942726 1.4309628584450942 0.642468126981353 1.1422397575704168 1.0 18.232102147944108 1.7578111197376984 24.9999999999995 0.9033230450326681 1.440480726527069 0.7811173207177382 0.12313705163874056 3.072978839415992 3994.5723769247556 0.05144343370163155 0.02852844425501564 57.254696878054496 -1.7578111197376984 0.5371576814944008 DHENIVIAK ddPTM_BT-474_Trastuzumab_2h_R1 7 DHENIVIAK 9 0 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 ;;;;;; 135.55 0.00021771 12878680000.0 29052810.0 28711090.0 23233290.0 21122410.0 22489930.0 29281480.0 27875420.0 8638820.0 31410140.0 17235210.0 False True 28896392.89903061 29666721.27442961 26504335.284623183 23796504.940270536 25353889.27724126 27257320.20878971 26526979.4401546 9283492.615439104 23669531.871312454 16135244.141994344 1.790886623390067 1.8386285954742767 1.6426361480110336 1.4748153006459093 1.5713359558814506 1.6893032400946775 1.6440395451540915 0.5753549517901282 1.4669460011273718 1.0 23.943712071585804 1.7638621879208274 24.999999999997303 0.9812004160466115 1.660448669023841 0.64196707452325 0.22216994597639503 8.61202494235089 8515.129046502936 0.09790375787284858 0.05429611677789853 58.058015624736896 -1.7638621879208274 0.6792482529772295 DHFEEAMR ddPTM_BT-474_Trastuzumab_2h_R1 11 DHFEEAMR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;;;; 201.39 0.00011215 22530870000.0 18324580.0 20789780.0 21094600.0 18380300.0 13800120.0 16674320.0 19838620.0 8477650.0 26442200.0 15464520.0 False True 18225922.49733224 21481755.25961259 24064536.322449893 20707244.095425405 15557483.482280396 15521663.505527271 18878950.15971202 9110295.29163444 19925874.117327027 14477561.093758306 1.2589083464610598 1.4837965538873805 1.6621954600367606 1.430299203113216 1.0745928393275905 1.0721186672953573 1.3040145392894442 0.6292700291599634 1.376328097549362 1.0 23.787315249070712 3.246951655974284 4.348273837668137 1.0406971803764653 1.4814472545631738 0.4420055558660805 0.20887674210441806 0.17099494082305436 7.629927395234763 0.060508662387568315 0.07873139391275395 1765.8412429500695 -3.246951655974284 0.44075007418670853 DHFGRPPVDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHFGRPPVDIR 11 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 ; 119.74 0.00032756 359590000.0 131932.0 162567.0 152137.0 154411.0 143346.0 153199.0 152695.0 76724.0 183666.0 137088.0 False True 131221.69277102308 167977.94432117342 173556.5672014902 173959.4167678837 161600.2634216922 142608.71372165537 145308.5594984543 82449.5344765779 138403.97529831034 128338.92647305847 1.0224621350449723 1.3088620026476236 1.3523298968682276 1.3554688475939691 1.2591679536575842 1.1111883014822668 1.1322251439352515 0.6424359057879926 1.0784255338723343 1.0 16.96959929499678 2.138248206833643 2.306847429102057 0.8745682882086744 1.2610316254114267 0.4756034231648968 0.14805409180784898 0.2159676238952139 2.277501409209784 0.07094749330168064 0.04412817909920288 137.48274882937613 -2.138248206833643 0.3864633372027523 DHGDMTNRK ddPTM_BT-474_Trastuzumab_2h_R1 3 DHGDMTNRK 9 1 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;; 101.65 0.002494 136028000.0 118143.0 147010.0 139788.0 147010.0 136652.0 121782.0 152861.0 92163.0 190955.0 139652.0 False True 117506.93121492119 151903.13898057828 159468.9353409225 165621.45092672503 154053.8222001389 113363.49698399217 145466.52944427283 99040.67105423126 143896.69891590625 130739.28979790748 0.8987882020512699 1.1618782633390865 1.2197476029388286 1.2668070262790723 1.1783284308662705 0.8670958604657082 1.1126458593214805 0.7575432848635257 1.1006385237241005 1.0 16.99633323973636 2.749028528258223 24.698942172114304 0.9486998659706352 1.1569489816719165 0.29894966069377626 0.133767049826831 657.9608523321098 1552451.6039170853 0.040643501143842374 0.04267106973013085 561.0848317787718 -2.749028528258223 0.20824911570128135 DHGGALGPEEFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DHGGALGPEEFK 12 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 ;; 144.57 6.3164e-05 648550000.0 1973950.0 1382350.0 1202210.0 988150.0 1114970.0 1511910.0 1431220.0 817470.0 1841490.0 1285760.0 False True 1963322.4725264625 1428360.684101778 1371470.7182033542 1113249.6886826984 1256954.8205550504 1407395.220353318 1361986.4208086545 878473.762428551 1387679.4642017893 1203701.6960054827 1.6310706207707462 1.186640086029481 1.1393775739908132 0.9248551301182413 1.044241131109385 1.1692225947872283 1.131498298397721 0.7298101891388792 1.152843323895648 1.0 20.199046473867178 DHGGIFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHGGIFSR 8 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 0 ; 148.52 0.00096653 199420000.0 78498.0 98316.0 103737.0 101323.0 102493.0 105457.0 104984.0 55490.0 103329.0 82197.0 False True 78075.37548994778 101588.38862672304 118342.26790183203 114150.48141111866 115544.87602639421 98167.00580907581 99905.5228421738 59630.945572510645 77864.95248766296 76951.11708760775 1.0146100335497414 1.3201678217493076 1.5378888881769064 1.4834155205461144 1.5015360452122872 1.275706052419149 1.2982985383881145 0.774919817013464 1.0118755313066452 1.0 16.2316546496384 1.8496032039970938 5.341745188854901 0.9166255038906265 1.367416506436652 0.6121652355521704 0.152664082756753 0.14491530248797926 5.636406554465439 0.07282408912792143 0.042694679710056554 70.72992604686085 -1.8496032039970938 0.45079100254602544 DHHPENGEEAVTVLEDLES(ph)ELDDPGQPVSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DHHPENGEEAVTVLEDLESELDDPGQPVSLR 31 0 P17028;P17028-2 P17028 ZNF24 Zinc finger protein 24 1 DHHPENGEEAVTVLEDLES(1)ELDDPGQPVSLR 148.89 2.2087e-08 20969000.0 25477.0 25401.0 22864.0 25514.0 22240.0 31690.0 26561.0 13912.0 28938.0 18293.0 True False 25339.834662760786 26246.45692977124 26083.052462549385 28744.069783990628 25072.13217319241 29499.344890235974 25276.14295712657 14950.184083704586 21806.617649333602 17125.525078574774 1.4796530060536763 1.5325928290868809 1.5230512549469857 1.6784343634491805 1.4640212231833636 1.7225366670445459 1.4759338964005715 0.872976683349015 1.2733400902618282 1.0 14.06386060217109 1.8564126364511264 5.735245408569227 1.0499631568117644 1.5654804915783187 0.7903574117138841 0.11976825309777553 0.08922712687197776 3.7395256654366555 0.04973107630066972 0.02962992172163065 71.84766136461234 -1.8564126364511264 0.5155173347665543 DHHPENGEEAVTVLEDLESELDDPGQPVSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DHHPENGEEAVTVLEDLESELDDPGQPVSLR 31 0 P17028;P17028-2 P17028 ZNF24 Zinc finger protein 24 0 47.757 0.053649 14068000.0 14351.0 15221.0 14227.0 12810.0 13935.0 14853.0 14361.0 12394.0 21092.0 15252.0 False True 14273.73581054599 15727.621783711207 16230.037936699182 14431.744686561102 15709.539650783994 13826.24707020116 13666.303565652457 13318.903215456769 15894.159218320012 14278.604302105845 0.9996590358933655 1.1014817310534797 1.1366683741145158 1.0107251648140898 1.1002153514729105 0.9683192262819433 0.9571176059299379 0.9327874723366669 1.113145156349483 1.0 13.801567345972638 2.732938748910502 24.796103884169543 0.9823196344172939 1.0719513473633953 0.275290656958892 0.059620901016580644 468.10837648524273 2064657.302322103 0.018877106417418132 0.018259422365273514 540.6780625802271 -2.732938748910502 0.0896317129461014 DHIIDDALVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DHIIDDALVR 10 0 A0A1B0GVL3;Q05086-2;Q05086-3;Q05086;A0A0D9SG77 A0A1B0GVL3 UBE3A Ubiquitin-protein ligase E3A 0 ;;; 192.12 7.176600000000002e-07 964770000.0 885120.0 1026650.0 841670.0 923780.0 893660.0 948840.0 929150.0 364601.0 1036550.0 749680.0 False True 880354.6122660767 1060821.4246269686 960169.8200732125 1040730.4532827028 1007462.3038621907 883248.9241291106 884203.4648023102 391809.3780263643 781106.1415583914 701834.7805666606 1.2543616199175531 1.511497369467017 1.3680852625997995 1.4828710148026838 1.4354693323245775 1.2584855418763607 1.259845606523526 0.5582644076288409 1.1129487497438175 1.0 19.420771919053067 1.9252932158285736 6.347800891164834 0.8519439252029124 1.3864034135624363 0.6710388233805931 0.15435424650022747 0.12121228834493598 8.307142006752926 0.06472161473762217 0.039790114210548275 84.19634050849622 -1.9252932158285736 0.534459488359524 DHIKDEWEGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHIKDEWEGLR 11 1 O60306;H0YH15 O60306 AQR Intron-binding protein aquarius 0 ; 232.42 2.0878000000000002e-13 875850000.0 530080.0 484460.0 458520.0 414060.0 401200.0 603020.0 522240.0 158301.0 726710.0 400220.0 False True 527226.1081774243 500584.9582377453 523075.6304727147 466479.953545472 452290.44190129446 561334.6467563928 496977.2560494633 170114.22445619048 547622.0579151019 374677.61695441906 1.407145995170465 1.3360418012337345 1.3960685314606045 1.2450168690013341 1.2071456138152958 1.4981803592091312 1.3264129842854275 0.4540282545804852 1.4615819924511855 1.0 18.515290268828174 1.9457267126090714 24.997969433945997 0.9059596220431171 1.3449028476974054 0.3252004477520487 0.24100221712608486 284.72589869156207 131142.56295698692 0.0937421005840972 0.06050309874151282 88.25243817648908 -1.9457267126090714 0.43894322565428834 DHIMEIFSTYGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHIMEIFSTYGK 12 0 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BV80 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 0 ; 172.13 3.6596e-05 3844600000.0 5169600.0 5277600.0 4730500.0 4582800.0 4651800.0 5520800.0 5470000.0 2194400.0 6620900.0 4259000.0 False True 5141767.447996549 5453261.725623434 5396513.281756907 5162982.010114929 5244179.156621242 5139160.090565306 5205395.202570771 2358157.27093742 4989267.910514647 3987186.973686655 1.2895726942151247 1.367696514262337 1.353463812299515 1.2948933782608905 1.315257897668225 1.2889187601386818 1.3055307506077973 0.5914338320475118 1.2513252936070471 1.0 21.92693982945895 1.776521023485703 24.999999999999954 0.9068325308716315 1.3179321506559418 0.546587014411468 0.15261340702820783 29.3368011154617 19328.54463389516 0.0651142003704281 0.03615181632281702 59.775198018423986 -1.776521023485703 0.4110996197843103 DHINDIIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHINDIIK 8 0 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 122.13 0.0014034000000000002 1197600000.0 2797600.0 2677700.0 2595300.0 2133900.0 1850960.0 2731900.0 2846800.0 1098620.0 3876300.0 2096300.0 False True 2782538.0324425804 2766825.625796167 2960695.681248005 2404051.5212063026 2086668.7845005465 2543050.1832008697 2709089.4081679136 1180604.603079322 2921037.804758856 1962512.3392672758 1.4178448597584206 1.4098385882400057 1.5086252565185967 1.2249867035760296 1.0632640329179412 1.295813601941654 1.380419044488342 0.6015781809148334 1.4884175484213544 1.0 20.904270294280664 3.2841905256070065 0.6065549909299705 1.033924464450574 1.4964369411411587 0.21539641413484645 0.23665581063422333 1.3245421859358992 1.0066100072728996 0.16390915449562138 0.3411954338015776 1923.9355770724417 -3.2841905256070065 0.4625124766905846 DHINLPGFSGQNPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DHINLPGFSGQNPLR 15 0 P00491;G3V5M2 P00491 PNP Purine nucleoside phosphorylase 0 ;;; 199.58 7.350399999999998e-09 2163470000.0 1219200.0 1326460.0 1306010.0 1247860.0 1047700.0 1258370.0 1286140.0 578107.0 1572410.0 1139370.0 False True 1212635.9626658529 1370610.4192379965 1489884.8559575807 1405838.9480540326 1181118.3847955794 1171381.8437843558 1223924.494668078 621248.2799078646 1184910.6247145156 1066654.4311362656 1.1368592556954729 1.284962007590348 1.396783074693145 1.3179891322032449 1.1073111875018227 1.0981830755969655 1.1474423758445165 0.5824269433222837 1.1108664532076018 1.0 20.024661424740398 2.4072413761311657 1.332840994038848 0.8707531861214988 1.2766264521390303 0.4343404277755786 0.15921410463919483 0.34280205974621386 1.222801097318248 0.0881209127658214 0.06039619006196759 255.41204605130977 -2.4072413761311657 0.4058732660175315 DHLLSVSLSGYINYLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 DHLLSVSLSGYINYLDR 17 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ;; 208.43 5.1823e-12 969218000.0 562526.0 696036.0 704725.0 734722.0 673747.0 708845.0 686542.0 244695.0 702465.0 573893.0 False True 559497.4225185141 719203.1374973523 803944.1544204924 827737.7298672557 759544.6868386634 659844.213591648 653331.3406148712 262955.383436033 529351.913298747 537266.6574054831 1.0413775260508176 1.3386334841072394 1.4963596630076075 1.5406460059600344 1.4137201264388604 1.2281503132506022 1.2160280776958627 0.48943179296826655 0.9852684993612721 1.0 19.035278782073572 1.9216709133682646 6.003580563423846 0.7809591132968312 1.3517124955669535 0.6048267931224187 0.18645178202087814 0.14018008234914672 8.404605377844279 0.08309868481302089 0.05071745680464601 83.4970079901917 -1.9216709133682646 0.5707533822701223 DHLVTAYNHLFETK ddPTM_BT-474_Trastuzumab_2h_R1 3 DHLVTAYNHLFETK 14 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ;; 247.29 4.7572e-18 4970100000.0 9121670.0 8108890.0 6774290.0 6336840.0 6777590.0 9342340.0 8362700.0 1878600.0 9928020.0 5661360.0 False True 9072559.942232812 8378789.501722477 7728051.148815775 7139083.294269152 7640675.912576753 8696526.02530285 7958164.252383671 2018790.671337509 7481392.499652262 5300047.1578658465 1.7117885316865806 1.5808896132721089 1.4581098844274445 1.3469848628939038 1.4416241374828445 1.6408393673245452 1.5015270648248646 0.38090051110986894 1.4115709307508824 1.0 22.33757376562577 1.7749839739963884 24.999999999701892 0.8699724345225177 1.5197594200007056 0.531818094615597 0.2539269776225946 27.777470567110136 19073.88514416672 0.11085095757391987 0.06152377280413254 59.564016326462244 -1.7749839739963884 0.6497869854781879 DHLYGTLDPNTR ddPTM_BT-474_Trastuzumab_2h_R1 5 DHLYGTLDPNTR 12 0 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;; 192.15 4.4571e-06 4302760000.0 3556150.0 4126780.0 3561800.0 3778000.0 3649180.0 4081810.0 3819390.0 1497817.0 4381790.0 3195300.0 False True 3537004.083525406 4264137.377608811 4063270.4802794056 4256294.412632937 4113881.4426155686 3799644.0822472046 3634631.514213307 1609591.7103006144 3301956.5674778307 2991373.2183660376 1.1824014675966799 1.4254782223189082 1.3583294974135207 1.4228563612526526 1.3752484702870587 1.2702006085093804 1.215037793311071 0.5380778635103959 1.1038263454405872 1.0 21.512376488706625 1.9347558755156393 7.0017846018954115 0.8373184632515899 1.3410835449778287 0.6408570219686074 0.15254864993469353 0.13740767575842652 12.57443700489734 0.06262242185656007 0.03897156087136762 86.05099086176612 -1.9347558755156393 0.5037650817262388 DHMVTMHDVLDAQWLYDNHKDESYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHMVTMHDVLDAQWLYDNHKDESYLR 26 1 O60832;O60832-2;H7C2Q2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 ; 301.12 4.0935e-71 376420000.0 177681.0 184270.0 162402.0 182339.0 187339.0 212792.0 185227.0 27894.9 239350.0 99811.0 False True 176724.38523821483 190403.31555643267 185266.78997651112 205423.0987043612 211195.51120475208 198082.18989848834 176266.86237414597 29976.559085432087 180365.39962568236 93440.97652750365 1.8912942887128041 2.0376854205969144 1.9827146168788083 2.1984262829690833 2.260202312232774 2.1198642957266647 1.8863979051231679 0.32080742517292415 1.9302602169680148 1.0 16.511767731079292 1.9217607135493153 8.278144930949189 1.0262509066166943 2.081662778249343 0.586225188449977 0.3756089952118704 0.2049057553271987 19.9591898448 0.14943638074801133 0.09395567672581943 83.51427466521463 -1.9217607135493153 1.0554118716326486 DHNEEEGEETGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHNEEEGEETGLR 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ; 236.4 1.0301e-16 595300000.0 445340.0 418400.0 354700.0 354010.0 370600.0 433010.0 386580.0 169732.0 455120.0 319060.0 False True 442942.3389219252 432326.1910718593 404638.6768923315 398827.6297025373 417793.7132817045 403077.03789589973 367879.6485209896 182398.2637216322 342961.77429555275 298697.31763899117 1.4829136813919104 1.4473721909828914 1.3546779733100323 1.335223338645996 1.3987193342882795 1.3494498078588808 1.231613499005749 0.6106458041316619 1.148191677804285 1.0 18.188324756456787 1.9488836242850935 6.311803723582112 0.8834017639098282 1.385411271679613 0.7165293548425087 0.1329361272688847 0.10374443095352907 9.67645242672564 0.05529093115667654 0.0343992109414508 88.89628750143527 -1.9488836242850935 0.5020095077697848 DHNEEEGEETGLRDEKPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHNEEEGEETGLRDEKPIK 19 2 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 133.47 6.9776e-06 449240000.0 512030.0 347700.0 326050.0 324150.0 322180.0 453480.0 456850.0 197890.0 555850.0 306850.0 False True 509273.28737188136 359272.9843109112 371955.00592259556 365187.3567641516 363207.71328952926 422131.99497709714 434750.420163521 212657.55666505912 418868.2155084002 287266.5702924983 1.7728247559517043 1.2506606109617806 1.2948078349105032 1.2712490575994047 1.2643577459072484 1.4694783125905575 1.5134041518330967 0.7402795126788635 1.458116811440689 1.0 18.13203058815876 7.999999999999999 0.1428379745741758 0.9649270136370985 2.974685606337373 0.24797042330554675 0.23439180969313866 104.64633729288458 0.9906551169731672 0.9468660615695511 43.165269126399224 99999999.99999979 -7.999999999999999 2.0097585927002743 DHNS(ph)EDEDEDKYADDIDMPGQNFDSK ddPTM_BT-474_Trastuzumab_2h_R1 3 DHNSEDEDEDKYADDIDMPGQNFDSK 26 1 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 DHNS(1)EDEDEDKYADDIDMPGQNFDSK;DHNS(1)EDEDEDKYADDIDMPGQNFDSK;DHNS(1)EDEDEDKYADDIDMPGQNFDSK 282.74 3.6080999999999986e-61 1077820000.0 1801590.0 960190.0 816010.0 716480.0 841240.0 1392060.0 1243330.0 629550.0 1989690.0 923150.0 True False 1791890.4396154673 992149.343702887 930897.1151139324 807186.2945376496 948366.9275798737 1295830.168756764 1183185.3779181573 676530.2177901259 1499357.5599800476 864233.7766515228 2.073386261941941 1.148010376945661 1.0771357707409874 0.9339906820873122 1.0973499916357412 1.4993977367761104 1.3690570883521975 0.7828092769196604 1.7348981265107624 1.0 19.72106209098746 4.739158623463617 24.122175456481724 1.1631302761116085 2.0733867127600747 0.49747731997576705 0.26797599894195706 24.24931479233304 977771.7114491592 0.062263997215848944 0.37000827650945683 54847.725638049116 -4.739158623463617 0.9102564366484662 DHNVGSPPKS(ph)PTHASPQHTQTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DHNVGSPPKSPTHASPQHTQTEK 23 1 A0A0C4DGH6;A0JNW5;F8W665;A0JNW5-2 A0A0C4DGH6 UHRF1BP1L UHRF1-binding protein 1-like 1 DHNVGSPPKS(0.997)PT(0.003)HASPQHTQTEK;DHNVGSPPKS(0.938)PT(0.062)HASPQHTQTEK;DHNVGSPPKS(0.949)PT(0.051)HASPQHTQTEK;DHNVGSPPKS(0.993)PT(0.006)HASPQHTQTEK 246.57 6.691e-38 718113000.0 184489.0 244373.0 286777.0 278625.0 277035.0 396700.0 355766.0 87200.0 302515.0 233094.0 True False 183495.73172265486 252506.80757840202 327152.7088896309 313898.8964319349 312313.7651349085 369277.0627313542 338556.2394219004 93707.30679262803 227964.2317433188 218217.7413581863 0.8408836540080481 1.157132348666065 1.4992030751186125 1.4384664348472747 1.4312024457363959 1.6922412468985122 1.5514606526248866 0.42942111951757067 1.044664060421808 1.0 17.73540887366469 1.749909170669659 24.99999999988595 0.7841943155361548 1.3865398890011718 0.461698496295713 0.26994177268898517 2.552477975761616 5632.961924238237 0.12817479387872097 0.07107973083432313 56.22237281512387 -1.749909170669659 0.6023455734650169 DHPAVAATLNNLAVLYGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHPAVAATLNNLAVLYGK 18 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;G5E9S8;Q9H0B6;Q9H0B6-2;A8MZ87 Q07866-6;Q9H0B6 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 0 91.371 0.0025327 232430000.0 112570.0 118370.0 109100.0 115340.0 117720.0 123940.0 134520.0 121860.0 177730.0 118100.0 False True 111963.9356277027 122309.87389382393 124460.33168580045 129942.03217392327 132710.94421889426 115372.31952337778 128012.75368369656 130953.81199254184 133930.8229599855 110562.75688950295 1.0126731530365156 1.106248408910978 1.1256985189885127 1.1752785099578158 1.2003223142448078 1.0435007480745215 1.1578288863729513 1.1844296911248136 1.2113556746223026 1.0 16.754505969418403 4.7775101611771875 1.6321386174929307 1.147888381075565 0.9551437757039025 0.24163771442909254 0.06481657440021216 1.412905045117589 3.363225488731744 0.016375091500290456 0.44337545921387955 59911.49559250892 -4.7775101611771875 -0.19274460537166238 DHPDVAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DHPDVAK 7 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;G5E9S8 Q07866-6 KLC1 Kinesin light chain 1 0 ;;; 132.09 0.0034023000000000005 676440000.0 3287270.0 3005230.0 2638750.0 2587400.0 2777710.0 2984110.0 3211500.0 2857380.0 4583500.0 3125690.0 False True 3269571.7035700344 3105257.263850099 3010263.063573836 2914964.574707902 3131434.9037229465 2777825.4995393506 3056147.4758786163 3070612.205081647 3453957.840753353 2926205.7881621574 1.1173416841689499 1.0611889554768454 1.0287256883134224 0.9961584337302143 1.0701348881172454 0.9492925995761908 1.0444062028180425 1.0493493716346538 1.1803537040102219 1.0 21.48059980124803 -1.0061637682529319 4.657927035970253 0.9999988346820095 1.0496204967253804 0.06465380440224289 0.05968227100915023 7.034881074956395e-07 1.5007069976342583e-07 0.05627981650685866 0.013264968442388935 0.09859076392809427 1.0061637682529319 0.04962166204337093 DHPLPEVAHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DHPLPEVAHVK 11 0 H3BN72;H3BNV9;P13073;Q86WV2;H3BPG0 H3BN72 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial 0 ;;; 169.52 9.7118e-06 1002690000.0 1185410.0 1265760.0 1378350.0 988230.0 1429280.0 3002690.0 1399800.0 725029.0 1711420.0 1461530.0 False True 1179027.8842714317 1307890.0564319235 1572409.6991670274 1113339.8166744942 1611290.3359937235 2795121.10787197 1332086.3262447133 779134.345602664 1289663.472853083 1368253.904121215 0.8617025544163771 0.9558825686464522 1.1492089987325378 0.8136938716718343 1.1776252427568281 2.0428380284192835 0.9735666181784214 0.5694369614118344 0.9425615150584145 1.0 20.38390454240404 2.000840194802347 24.999987631103156 0.7849947295125529 1.1714861557197445 0.15779517078040894 0.33878811383016694 46.115774840016606 1372141.5133458253 0.13489555978181486 0.0987726441267073 100.19364926118048 -2.000840194802347 0.38649142620719157 DHPPIPITDLADNIER ddPTM_BT-474_Trastuzumab_2h_R1 3 DHPPIPITDLADNIER 16 0 P10586-2;P10586;H0Y6Z7;H0Y7Z9;H0Y380;H0Y4H1 P10586-2 PTPRF Receptor-type tyrosine-protein phosphatase F 0 ;; 147.64 1.0085e-06 404540000.0 132767.0 170944.0 175525.0 154072.0 186452.0 208961.0 155107.0 137323.0 191471.0 162981.0 False True 132052.1972238005 176633.76770216972 200237.3943093503 173577.49940264187 210195.55701241325 194516.01791128414 147603.88184371954 147570.7395720647 144285.53762995207 152579.41304494586 0.8654653638292698 1.1576513775822304 1.3123486996923082 1.1376207047769318 1.3776141408441203 1.2748510040078924 0.9673905469818483 0.9671733337222516 0.9456422380354116 1.0 17.21920079243118 2.2265457936717628 24.942905551688334 0.9673032776475513 1.1982676677629653 0.4008901616670907 0.12987227490312098 217.7715069484811 452092.7557416149 0.04984372545742258 0.03709252274263498 168.4790068119007 -2.2265457936717628 0.23096439011541403 DHPQQQPGMLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHPQQQPGMLSR 12 0 Q8WUH6 Q8WUH6 TMEM263 Transmembrane protein 263 0 ; 167.73 4.8433e-05 557960000.0 612580.0 646480.0 636680.0 612430.0 634860.0 686360.0 645320.0 528010.0 698130.0 607150.0 False True 609281.9373440364 667997.6959945871 726319.0098782345 689963.5752061378 715705.6578899705 638913.5487176516 614103.4062382036 567412.7873804528 526085.2159627223 568401.1671927337 1.0719223895214853 1.175222245397118 1.2778281463872396 1.2138672737316611 1.259155855405358 1.124053899947409 1.080404900065895 0.9982611228313228 0.925552666545347 1.0 19.116549991546428 2.0558200202011347 1.5461384230058657 0.9653944773266743 1.2019576587410188 0.7439672937764814 0.05691435241491527 0.19827878595669005 0.891995224553377 0.03764733168413026 0.01906021545158295 113.71559293628589 -2.0558200202011347 0.23656318141434451 DHQFLEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHQFLEGK 8 0 Q96RS6-2;Q96RS6;Q96RS6-3 Q96RS6-2 NUDCD1 NudC domain-containing protein 1 0 90.15 0.015305 0.0 323110.0 345290.0 344310.0 368220.0 396800.0 435360.0 400590.0 287420.0 571660.0 399320.0 False True 321370.411660896 356782.768917787 392785.85520383046 414836.61424555286 447330.1279821379 405264.58792720543 381211.9312975916 308868.7398891875 430782.052851546 373835.05572494835 0.8596583084956763 0.9543855330151069 1.0506929438228643 1.1096782067189859 1.1965975933280695 1.0840732609768453 1.0197329690184829 0.826216629925792 1.1523318807439418 1.0 18.51204233605382 4.504418467812117 2.7041697223299423 1.0433435201146193 0.8594723514267499 0.29436022637205506 0.09558200877106894 0.4827969297616834 6.219927402510402 0.027688682982872918 0.15507439281437738 31946.145681802624 -4.504418467812117 -0.18387116868786935 DHQPCIIFMDEIDAIGGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DHQPCIIFMDEIDAIGGR 18 0 A0A087X2I1;P62333;H0YJX2 A0A087X2I1;H0YJX2 PSMC6 26S protease regulatory subunit 10B 0 ;;;;; 201.37 1.4107e-15 1003784000.0 278443.0 338776.0 287322.0 324978.0 309850.0 341041.0 328222.0 139814.0 370682.0 254979.0 False True 276943.8938259254 350051.9543655833 327774.4401524065 366120.18147925485 349307.5608751652 317465.63839416095 312344.6479301985 150247.63064110655 279332.38798432087 238706.02192149506 1.1601881326521621 1.4664563195674527 1.3731301687068624 1.5337701936973478 1.4633378666502368 1.3299439864930098 1.3084908600794392 0.6294253887340955 1.1701941397866658 1.0 17.864875436695176 1.900390775956843 6.848756659909016 0.9042390130107278 1.394177581208253 0.6291485343543781 0.15638822678256925 0.14038868961578416 8.300552254652894 0.06475686419373201 0.03994213295176475 79.50432888659826 -1.900390775956843 0.48993856819752524 DHQTITIQEMPEKAPAGQLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DHQTITIQEMPEKAPAGQLPR 21 1 P25205;P25205-2;J3KQ69;A0A499FHX9 P25205 MCM3 DNA replication licensing factor MCM3 0 126.26 1.3067e-05 297380000.0 73069.0 91017.0 83691.0 108480.0 91451.0 134710.0 123120.0 53168.0 146690.0 108090.0 False True 72675.60462272905 94046.4458240616 95473.96534478749 122213.55687729512 103096.74277745582 125397.81477323081 117164.21523592569 57135.66614163354 110540.2150452951 101191.60365949533 0.7181979728997953 0.9293898151918134 0.9434969097441384 1.207744046517314 1.0188270473938843 1.2392116562870983 1.1578452262717112 0.564628527223387 1.092385247863621 1.0 16.626730062281833 DHQYQFLEDAVR ddPTM_BT-474_Trastuzumab_2h_R1 6 DHQYQFLEDAVR 12 0 Q13263;Q13263-2;M0R3C0;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;;;; 243.3 2.4515e-16 19621800000.0 7483030.0 8517180.0 8162620.0 7584580.0 6436030.0 7577260.0 7735080.0 3178850.0 9944970.0 6319780.0 False True 7442742.197922798 8800669.187555969 9311845.945235087 8544787.050335487 7255620.27116148 7053461.851151449 7360904.629524889 3416071.9288732307 7494165.399270631 5916446.2297641225 1.2579751271092894 1.4874924652035306 1.5738917558972445 1.4442431687030057 1.226347707625621 1.192178814313784 1.2441429100621362 0.5773857812968619 1.2666666962287951 1.0 22.49629943670197 2.5005044187943373 1.2087624425846801 0.9232931264470106 1.4444378995098481 0.4730931555196364 0.19381934144067892 0.34986412701553465 1.0346913605101589 0.10724879197857615 0.0790699856989288 316.595267572866 -2.5005044187943373 0.5211447730628376 DHRDNLEFFLAGIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DHRDNLEFFLAGIGR 15 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 125.28 5.4936e-05 672289000.0 671830.0 943655.0 931975.0 1023498.0 977085.0 1001277.0 1076449.0 593397.0 1274236.0 1030427.0 False True 668212.9419273298 975063.986223506 1063188.979128083 1153072.741858387 1101510.9831134765 932061.0777425307 1024377.0494354876 637679.2973489113 960217.6116876163 964664.2666670624 0.6926896382676442 1.0107806621596702 1.1021336809763107 1.19530989350552 1.1418594231952042 0.9662025535192917 1.0619000670302987 0.6610375437167463 0.9953904636741554 1.0 19.879667401179116 1.7847193849935046 24.999999998514824 0.8491881472854356 1.0357275205973369 0.12738589214309426 0.15635740280893703 137.69853812505573 74602.80350962323 0.07245392694239486 0.04048121952239853 60.91431783240047 -1.7847193849935046 0.1865393733119013 DHRPPCAQEAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 DHRPPCAQEAPR 12 1 Q13501;Q13501-2;E7EMC7;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 ;;; 159.66 3.8318e-05 635102000.0 366956.0 457086.0 434265.0 442152.0 419321.0 406336.0 411619.0 210580.0 524891.0 364026.0 False True 364980.34966864425 472299.8311956781 495405.73730095365 498128.397865134 472719.04383971327 378246.9487320585 391707.41643272067 226294.54890357342 395538.64622905455 340793.5490216614 1.070972002599279 1.385882545463494 1.4536828491124545 1.4616720278160904 1.3871126527975048 1.1099005536281925 1.1493979787974893 0.6640223958264825 1.1606400630661982 1.0 18.378538501072914 2.3598660803400433 1.8863392884195425 0.9178308945660578 1.362953105509059 0.5096197567227647 0.16513385802389965 0.23885060968911603 1.7347014004151604 0.07530572471453587 0.054440687462942595 229.0161346486512 -2.3598660803400433 0.4451222109430011 DHS(ph)DS(ph)DDQMLVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHSDSDDQMLVAK 13 0 Q9NW75-2;Q9NW75 Q9NW75-2 GPATCH2 G patch domain-containing protein 2 2 DHS(1)DS(1)DDQMLVAK 91.592 0.004580399999999999 0.0 215500.0 192300.0 154270.0 144530.0 149290.0 224060.0 186750.0 117600.0 289510.0 183400.0 True False 214339.77194430068 198700.58925219535 175989.87506112212 162827.48318100514 168301.1965888443 208571.2595805069 177716.18904572082 126375.90916070006 218164.13973524704 171695.25498336038 1.2483732993382557 1.157286433288166 1.02501303881798 0.9483516780751183 0.9802320780801717 1.2147759097985575 1.0350675623676608 0.7360477677321229 1.2706474605625537 1.0 17.389490643616302 4.369510064679384 2.5756039711389658 1.0039934674969802 1.2415875844709963 0.2070368254481263 0.1386617131563899 0.42580461235067346 5.294266627158323 0.03665152836794882 0.15423545261599617 23415.857402765658 -4.369510064679384 0.2375941169740161 DHS(ph)PTPSVFNS(ph)DEER ddPTM_BT-474_Trastuzumab_2h_R1 2 DHSPTPSVFNSDEER 15 0 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 DHS(0.982)PT(0.018)PS(0.001)VFNS(0.999)DEER;DHS(0.993)PT(0.007)PS(0.023)VFNS(0.977)DEER 181.94 8.290600000000002e-07 1598220000.0 926110.0 827740.0 615920.0 781200.0 802690.0 927370.0 799990.0 521040.0 1059880.0 704830.0 True False 921123.9266604943 855290.8255206032 702636.1823273887 880099.8399017603 904907.8135836244 863263.0946941654 761291.4274414243 559922.6505875104 798686.7756643762 659847.1459646772 1.3959656146028154 1.2961953851754455 1.0648468916239004 1.3337935085179162 1.3713900546780053 1.3082773790467792 1.153739062292129 0.8485641773427994 1.2104118060505051 1.0 19.331772336334 2.0032486415898045 5.3559431204592 1.0011497497762316 1.2868814861530844 0.5235261265461865 0.1176803572056119 0.1269463867883194 11.80133421695062 0.04852131791388513 0.0326674751632046 100.75083208342622 -2.0032486415898045 0.2857317363768528 DHS(ph)PTPSVFNS(ph)DEERYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHSPTPSVFNSDEERYR 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 DHS(0.994)PT(0.006)PS(0.046)VFNS(0.954)DEERYR;DHS(0.977)PT(0.024)PS(0.192)VFNS(0.807)DEERYR 83.60600000000002 0.0072854 580290000.0 191568.0 194955.0 113258.0 214367.0 213183.0 227277.0 183462.0 122633.0 273611.0 165460.0 True False 190536.6191732056 201443.95932221378 129203.74194381639 241505.8402204562 240330.59141536287 211565.87594251055 174587.24216710037 131784.4971777561 206183.23524956152 154900.20114256706 1.230060501973393 1.3004757762503405 0.834109581464648 1.5591060465969249 1.5515189111611765 1.3658205372360332 1.1270949997438269 0.8507703424895121 1.331071449415321 1.0 17.240979491948384 2.0753418711111533 5.2781354238939295 1.0311509181101888 1.3060384712617747 0.20856191574279148 0.21919889020786215 0.29798758627103633 14.871704089337484 0.08809775058263764 0.0637519272345638 118.94381696579154 -2.0753418711111533 0.274887553151586 DHS(ph)PTPSVFNSDEER ddPTM_BT-474_Trastuzumab_2h_R1 7 DHSPTPSVFNSDEER 15 0 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 DHS(0.993)PT(0.007)PSVFNSDEER;DHS(0.995)PT(0.005)PSVFNSDEER;DHS(0.996)PT(0.004)PSVFNSDEER;DHS(0.508)PT(0.492)PSVFNSDEER;DHS(0.963)PT(0.037)PSVFNSDEER;DHS(0.99)PT(0.01)PSVFNSDEER;DHS(0.985)PT(0.015)PSVFNSDEER 235.92 6.9533e-18 13982670000.0 3168970.0 3100370.0 2177920.0 2751120.0 2770920.0 3330600.0 2856440.0 1352120.0 3401000.0 2212350.0 True False 3151908.6176256663 3203563.941236761 2484552.2051800024 3099411.509921308 3123780.2374704247 3100363.461389077 2718263.0845395396 1453022.0603262398 2562869.12106516 2071155.928911871 1.5218113583952095 1.5467516938330308 1.1995968871765819 1.4964645909348093 1.5082303528501468 1.4969242142082095 1.3124376811009304 0.7015512642206606 1.2374100304517495 1.0 20.982004741617313 1.939108657757883 6.5034697283699945 0.9569823577124975 1.4535158571968743 0.6673426106611291 0.15184066497729 0.12814238077913018 10.979142776212285 0.06346706920190869 0.0393273224163416 86.91778649397881 -1.939108657757883 0.49653349948437675 DHSDSKDQSDKHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHSDSKDQSDKHDR 14 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 0 ; 87.932 0.0021705 100446000.0 39662.0 46790.0 44127.0 44010.0 43617.0 40200.0 51288.0 25737.4 89608.0 43856.0 False True 39448.46419886248 48347.376864847734 50339.69804124027 49581.66148755306 49171.36641178658 37421.0686206212 48807.00350081353 27658.055479869072 67525.30908568265 41057.07253298937 0.9608201891931196 1.1775651278108201 1.226090778897894 1.2076277831965292 1.1976344970108956 0.9114402540647134 1.1887599502277493 0.6736489908686455 1.644669357062076 1.0 15.325343143072297 2.77440508447037 24.39478635560932 1.0401564661735698 1.1622499481713617 0.004247372691599027 0.24253295909861883 1443.8439483615061 982638.7406094463 0.07127048620317608 0.07559144556653045 594.8467381524332 -2.77440508447037 0.12209348199779191 DHSFFIPDIEYLSDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHSFFIPDIEYLSDIK 16 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 0 ; 138.57 5.8709e-06 148907000.0 420770.0 364255.0 305051.0 353381.0 367017.0 421544.0 393937.0 282667.0 596768.0 353858.0 False True 418504.62107194134 376379.0074782026 347999.52924917557 398118.99836703006 413754.43946980964 392403.65548783966 374880.76232452015 303761.04689394194 449702.5226815089 331274.4794869241 1.2633168172813034 1.136154550936541 1.0504869852581313 1.2017798623776705 1.2489777060721068 1.1845272720542557 1.131631880925851 0.9169467185169387 1.3574922021702531 1.0 18.337667540711724 1.993137344370039 23.926764443667675 1.0677609589509913 1.1753870192877283 0.09218359556686428 0.11930936510149247 342.9237340154783 1195610.0627607836 0.045042300581654114 0.031972143594278045 98.43223456305311 -1.993137344370039 0.10762606033673694 DHSSSRPS(ph)SPRPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHSSSRPSSPRPQK 14 2 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 DHS(0.017)S(0.017)S(0.017)RPS(0.475)S(0.475)PRPQK;DHS(0.06)S(0.06)S(0.06)RPS(0.41)S(0.41)PRPQK 74.786 0.016735 288780000.0 244711.0 498540.0 593470.0 607670.0 663680.0 736100.0 721010.0 457880.0 532470.0 612000.0 True False 243393.50316594815 515133.6025262066 677025.4174662863 684600.9596941913 748195.7140604473 685215.1395930165 686131.991774324 492049.3306675289 401249.90323245124 572941.6360404397 0.4248137818155858 0.8991031025188875 1.1816655918832544 1.1948877802378293 1.305884695745236 1.1959597566141138 1.197560010677763 0.8588123112644562 0.7003329449147068 1.0 19.128028657601263 4.676242574345813 2.845043265568118 1.0840741494953334 0.3526443846133927 0.5608143579879125 0.17440315556167416 0.2803735947466809 3.4167471078768634 0.047673744066069335 0.43955388812227386 47450.694619688504 -4.676242574345813 -0.7314297648819408 DHSVAESLNYVASWNMSMLQTQDLVK ddPTM_BT-474_Trastuzumab_2h_R1 3 DHSVAESLNYVASWNMSMLQTQDLVK 26 0 Q13011 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 0 ;; 389.18 6.177499999999997e-145 618543000.0 307630.0 319938.0 327189.0 262726.0 338423.0 537324.0 373291.0 212268.0 436976.0 360085.0 False True 305973.7542609064 330586.94292339456 373254.3672222305 295987.08466209634 381519.1630597253 500180.056604643 355233.4882198988 228108.51603506372 329289.11997840885 337104.06701572135 0.9076537016286929 0.9806673228536787 1.1072378050094045 0.878028815500148 1.1317548507711495 1.4837556278468642 1.053779894632158 0.6766709107203549 0.9768174050627872 1.0 18.3628345073597 1.937239922980212 12.471572929542399 0.8525888128198694 1.0875709832070408 0.19360255636020862 0.17751568397821887 2.044314289122326 404.089102360748 0.07733641911443702 0.049582716477346106 86.54458963303954 -1.937239922980212 0.2349821703871714 DHSVDSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHSVDSFK 8 0 Q641Q2;Q641Q2-2;F8W7U3;A0A087WYF6;B1AP61 Q641Q2 FAM21A WASH complex subunit FAM21A 0 101.43 0.005399899999999999 149120000.0 276450.0 274260.0 271040.0 244450.0 259750.0 317210.0 294330.0 252380.0 381430.0 287340.0 False True 274961.6239164823 283388.57830632926 309200.07607808703 275397.34493597713 292827.6228411301 295282.01933202124 280092.1334502113 271213.8771596722 287431.68740014225 269001.7151958494 1.0221556532317786 1.053482421478262 1.1494353329790883 1.0237754236454266 1.0885715826307427 1.0976956749775302 1.0412280577701425 1.008223597987887 1.0685124709739293 1.0 18.037255846091043 2.049226909732207 6.951310006502432 1.0260233745097351 1.0735131681931365 0.23671179503205875 0.03858822045954308 0.2852587799005244 31.717383752463245 0.014343020980222287 0.010495478619390644 112.00229190370226 -2.049226909732207 0.04748979368340134 DHTLEDEDVIQIVK ddPTM_BT-474_Trastuzumab_2h_R1 5 DHTLEDEDVIQIVK 14 0 Q9Y295 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 0 ;;;; 157.52 5.2764999999999985e-06 1105449000.0 1482280.0 1377340.0 1216920.0 1176490.0 1258860.0 1605510.0 1508550.0 485689.0 1828550.0 1111830.0 False True 1474299.5691767887 1423183.929280388 1388251.758341741 1325433.5133717633 1419168.3591522013 1494524.872664017 1435575.673279368 521933.5794587693 1377928.3538146713 1040872.0575144462 1.4164080575833182 1.3672995821204814 1.3337390972496863 1.2733875444181262 1.3634416919031422 1.4358391714663494 1.3792047379074193 0.501438746184735 1.3238210631814824 1.0 19.98936131487482 1.7762675859783603 24.999999999991562 0.8917707788174839 1.3646796689588878 0.5029110697730594 0.19183081130827076 31.587495600867477 20951.361663071366 0.08236992521315618 0.04572934504293365 59.74032569466538 -1.7762675859783603 0.4729088901414039 DHTTLLSEVMTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DHTTLLSEVMTPR 13 0 P20839-3;P20839-7;P20839-5;P20839-6;P20839;A0A3B3IRL5;C9J381;P20839-2;P20839-4;C9K0R9;C9J029 P20839-3 IMPDH1 Inosine-5-monophosphate dehydrogenase 1;Inosine-5-monophosphate dehydrogenase 0 145.71 2.8588e-06 0.0 63299.0 87834.0 90301.0 95148.0 93009.0 102580.0 91215.0 56103.0 102040.0 91215.0 False True 62958.205217180024 90757.5015932258 103014.59588963747 107193.72704425568 104853.14484246634 95488.88604734636 86802.58197486159 60289.69074526154 76893.60926594795 85393.58060690948 0.737270937343572 1.0628141008749585 1.206350584639874 1.255290225358957 1.227880879303266 1.1182208939909475 1.0165000853452688 0.7060213462975845 0.9004612374776826 1.0 16.381840000043095 1.9619017291673528 5.75994242927109 0.8399578833433031 1.1138793241712266 0.30936447543995693 0.1527649484055794 0.20946367362038865 18.85515941423879 0.06857481954320302 0.042972756933506016 91.60131939940534 -1.9619017291673528 0.27392144082792347 DHTYAK ddPTM_BT-474_Trastuzumab_2h_R1 5 DHTYAK 6 0 Q06210-2;Q06210;A0A6I8PRN4 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ;;;; 113.25 0.026298 2024080000.0 3471560.0 3436140.0 3011490.0 2852270.0 3090100.0 2040390.0 3350680.0 1960480.0 4526120.0 3302240.0 False True 3452869.506686575 3550509.8427095097 3435481.61565968 3213367.089550167 3483605.9185423525 1899342.6418614245 3188594.8075593864 2106780.972715724 3410718.3729007463 3091488.2160100997 1.1168955743725515 1.1484791772202927 1.1112711340344494 1.0394240136219457 1.1268378447964207 0.6143780953215897 1.0314109531604856 0.6814779243877412 1.1032609974825158 1.0 21.559870075735635 2.7993461707780596 24.998840480132312 0.8634656948945449 1.1071056370876837 0.3699996275765375 0.14363440194514318 221.24216754417756 90988.1285877653 0.04041695176010643 0.04286864464028555 630.0081545068799 -2.7993461707780596 0.24363994219313878 DHVFLCEGEEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHVFLCEGEEPK 12 0 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BTV5;Q9H910-2;H3BU16;H3BMT0 A6NGP5;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein 0 ; 160.52 6.783100000000001e-05 1251270000.0 1117000.0 946220.0 736650.0 831100.0 748070.0 994380.0 965410.0 416170.0 1339430.0 753430.0 False True 1110986.1961103664 977714.3606979314 840363.9169234178 936317.1747853965 843332.2803417275 925640.8511187397 918709.4300756599 447226.71866843995 1009345.4239424609 705345.4523561245 1.5750951429533515 1.3861496624554537 1.1914217552778994 1.3274590084301783 1.1956301377214158 1.3123227037570655 1.3024957161158661 0.6340534516449082 1.4309944447374825 1.0 19.42797048419845 7.999999999972711 0.21165891776820486 0.9655933546007369 3.882606552311864 0.3026228784281745 0.20723312073261882 56.90392546158983 0.7117741855402251 0.3500936520254366 56.06970116447567 99999999.9937164 -7.999999999972711 2.917013197711127 DHYEATAMHR ddPTM_BT-474_Trastuzumab_2h_R1 8 DHYEATAMHR 10 0 O75832;B1AJY5;B1AJY7;O75832-2;B1AJY6 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 ;;;;;;; 208.6 6.4036e-08 1986115000.0 1968136.0 2115446.0 1932944.0 1976249.0 1797474.0 2137950.0 2005175.0 575378.0 2308565.0 1536121.0 False True 1957539.7744564682 2185857.3412958905 2205085.7137495643 2226441.920770624 2026371.659436906 1990158.548692961 1908177.0247376347 618315.6280702831 1739650.0889361345 1438084.442640646 1.3612133727432485 1.5199784355376 1.5333492584764576 1.5481997125859848 1.4090769633221487 1.383895472117467 1.3268880242065573 0.42995780340611767 1.2096995401339203 1.0 20.455716960958213 1.9244333154843667 7.576392963063656 0.8275694815278744 1.4582424843518311 0.6436116069081328 0.19208241653525257 0.15414878961128203 13.764543864615712 0.07823397767481528 0.048877443034363206 84.02979721529114 -1.9244333154843667 0.6306730028239568 DHYIAAQVEQQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DHYIAAQVEQQHK 13 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 0 87.49799999999998 0.0048227 132700000.0 74699.0 67966.0 71772.0 57748.0 61700.0 70721.0 73612.0 62648.0 106870.0 68757.0 False True 74296.82888383907 70228.20722368546 81876.87374659276 65058.89087896418 69557.12927544836 65832.22372932715 70051.10633485192 67323.11188009809 80533.32048463209 64368.86939417074 1.1542354181937429 1.0910275088666594 1.2719949024614614 1.0107198012220473 1.0806020042003017 1.0227338828369872 1.0882761650804413 1.0458955161669328 1.2511221844130325 1.0 15.974075508428953 3.719079469264331 24.969184678200783 1.071097603004045 1.1642801257605468 0.25675502163286357 0.07844625968108865 1091.5147346250421 1399006.281057223 0.01986109534222091 0.03082015259527769 5236.962562437835 -3.719079469264331 0.09318252275650174 DHYPCVSS(ph)LEQLTELGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DHYPCVSSLEQLTELGR 17 0 Q8WWK9-6;Q8WWK9-5;Q8WWK9 Q8WWK9-6 CKAP2 Cytoskeleton-associated protein 2 1 DHYPCVS(0.186)S(0.814)LEQLTELGR;DHYPCVS(0.154)S(0.846)LEQLTELGR 221.14 2.4355000000000002e-15 62409000.0 54152.0 62129.0 56040.0 53118.0 54994.0 69004.0 62535.0 44895.0 90394.0 60208.0 True False 53860.451648852795 64196.92620722643 63929.944891588006 59842.73335368873 61997.15992502439 64233.91589794399 59509.943143101234 48245.29287219073 68117.60991754316 56365.473893337876 0.955557505837254 1.1389405920494566 1.1342039811918305 1.0616913017875265 1.0999137529180278 1.1395968393611984 1.0557871518247808 0.8559369688523649 1.208498841798868 1.0 15.782524104314405 1.9905598847894064 24.641436293436005 0.9930692163394297 1.092493572857105 0.0666081278501286 0.09546430719812368 610.7927145791972 1594345.9971589257 0.035789927411412 0.02497870167952565 97.84978703811665 -1.9905598847894064 0.09942435651767534 DHYSNGFCTVYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DHYSNGFCTVYAK 13 0 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 ; 114.43 0.00074346 668480000.0 463900.0 801300.0 906940.0 972040.0 908020.0 1020650.0 976080.0 567660.0 914210.0 891050.0 False True 461402.41394413495 827970.7861039208 1034629.2687362039 1095100.1643344944 1023650.9647438017 950094.8678516684 928863.2814123001 610021.6717190731 688915.1952863799 834182.4261337146 0.5531193171770018 0.9925536191662732 1.2402913755106593 1.3127825881085586 1.2271308201591344 1.1389533489157606 1.1135013784903312 0.7312808956506237 0.8258567595092812 1.0 19.6700033934767 1.750566482210232 24.99999999726675 0.8324951895900168 1.1017965748321288 0.19925714800619354 0.20790604622267936 4.93469831270937 10292.816379422637 0.10082618172972006 0.055913386850076144 56.30753068978681 -1.750566482210232 0.269301385242112 DIAAHIK ddPTM_BT-474_Trastuzumab_2h_R1 6 DIAAHIK 7 0 P63167;F8VXL2;F8VRV5 P63167 DYNLL1 Dynein light chain 1, cytoplasmic 0 ;;;;; 104.45 0.0081492 5496120000.0 7677070.0 7975230.0 7326460.0 6768020.0 6539540.0 8601020.0 8720440.0 7509000.0 10489880.0 8751630.0 False True 7635737.508122657 8240680.709421659 8357961.885268098 7624850.638059269 7372311.6561096525 8006451.732023274 8298599.001884153 8069359.709929405 7904789.631190539 8193093.4807526 0.9319724626675753 1.0058082125854968 1.020122851631415 0.9306436764052234 0.8998202783147602 0.9772196241666484 1.0128773730434553 0.9848977957942414 0.9648113560232956 1.0 22.965976844962494 2.4818209625332273 24.98453294585616 0.9904087371456297 0.9599358553284609 0.16434798626790637 0.0350186260100424 445.30590877555136 2367347.4077032264 0.012993438830892889 0.011135193850492818 303.26407233494996 -2.4818209625332273 -0.030472881817168784 DIAANEENRK ddPTM_BT-474_Trastuzumab_2h_R1 6 DIAANEENRK 10 1 O75368 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein 0 ;;;;; 142.71 5.6559e-05 5022250000.0 2908850.0 2635710.0 2261440.0 1965300.0 2133070.0 2887860.0 2642460.0 2553400.0 3490320.0 2770500.0 False True 2893189.074803618 2723438.0140296607 2579831.0952111473 2214106.778493251 2404703.820803576 2688229.0354912197 2514634.1146225166 2743947.673902477 2630177.403891838 2593684.318055617 1.1154746376276536 1.0500267881757155 0.9946588631669505 0.8536531462522315 0.9271382041613637 1.03645189847409 0.9695220413360245 1.0579343271657309 1.014069979751267 1.0 21.306571466612205 4.45525693181355 2.7128931391491173 0.9825794064688393 1.1117893594905472 0.3816958782975768 0.05468650393579011 0.3484871932640524 4.704914299794657 0.015443062604616609 0.0753706740620975 28527.054499308477 -4.45525693181355 0.1292099530217079 DIAAYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIAAYIK 7 0 Q96FJ2 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic 0 122.78 0.010022 107240000.0 343850.0 434980.0 368570.0 345830.0 318650.0 432600.0 408470.0 326440.0 485280.0 436950.0 False True 341998.74980532634 449458.0463490369 420461.4523321304 389612.0425412515 359228.1887134787 402695.380230864 388710.7455930684 350800.6104287323 365689.246418848 409063.47690828406 0.8360530067122216 1.0987489026056698 1.027863586135806 0.952448860714608 0.8781722372980785 0.9844324975538017 0.9502455426501474 0.8575701088742889 0.8939669930513963 1.0 18.64196520688275 3.500149199232559 6.984799713105699 0.9198396499335465 0.9975937820585733 0.10720670647562114 0.07419829125776095 0.3066961302715811 62.53067845277912 0.01958784033359678 0.029229491803349605 3163.3642280908543 -3.500149199232559 0.0777541321250268 DIAAYIKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIAAYIKK 8 1 Q96FJ2 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic 0 ; 128.69 0.0018004999999999996 901840000.0 1359520.0 1819340.0 1402650.0 1518050.0 1723520.0 2174430.0 2015900.0 1775560.0 3013140.0 2267000.0 False True 1352200.4953768724 1879895.6320857452 1600130.9279476427 1710234.9743508284 1943000.0558966084 2024116.772157645 1918383.2155141544 1908061.303310993 2270592.0210074345 2122318.1191236535 0.637133746912184 0.8857746702280386 0.7539543264175532 0.8058334699875331 0.9155083954609552 0.953729204834496 0.9039093612913658 0.8990458527955595 1.069864126658357 1.0 21.017209490649396 6.606103434078571 0.22183270580382033 1.0228717090401833 2.838226220607787e-16 0.6951393985434295 0.06496152389591694 16.330353150098762 0.35696508663079246 0.10219399978337669 5.288124166914885 4037415.389312732 -6.606103434078571 -1.022871709040183 DIAAYR ddPTM_BT-474_Trastuzumab_2h_R1 5 DIAAYR 6 0 P26583;P09429;P23497 P26583;P09429;P23497 HMGB2;HMGB1;SP100 High mobility group protein B2;High mobility group protein B1;Nuclear autoantigen Sp-100 0 ;;;; 141.59 0.027066000000000003 20941450000.0 7930240.0 9306170.0 9010720.0 8866430.0 8268200.0 9313520.0 9407030.0 7938310.0 10178450.0 8806330.0 False True 7887544.468972491 9615920.242751433 10279351.053417722 9988919.12890444 9321106.260539098 8669698.28406785 8951976.02055564 8530707.00212141 7670107.381742338 8244302.479921565 0.9567267198385875 1.1663715961623615 1.2468430262538739 1.2116148277227539 1.1306118720461815 1.051598762318863 1.0858378913628612 1.0347396911864117 0.9303524950015309 1.0 22.974966007034592 1.999654475012698 1.0251425947853174 0.9737595274284764 1.150466372986826 0.4120140399418992 0.07745803636001321 0.5274002212488916 1.020610228142531 0.06395750539129193 0.030069782809029198 99.92047157212902 -1.999654475012698 0.1767068455583497 DIAWTEDSKR ddPTM_BT-474_Trastuzumab_2h_R1 6 DIAWTEDSKR 10 1 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 ;;;;; 176.95 3.8152e-06 6447280000.0 4414090.0 3836080.0 3293300.0 2983400.0 2942670.0 4128510.0 4020770.0 3737190.0 4557890.0 4008640.0 False True 4390325.0298915 3963761.603840669 3756968.014123244 3361098.134105102 3317401.581928422 3843115.8211671864 3826269.9942670027 4016078.0948662963 3434659.082096936 3752805.163230632 1.1698782214720826 1.056213001057703 1.0011092637937613 0.8956228708691272 0.8839791669527045 1.0240648405681712 1.0195759779261038 1.0701536371286122 0.9152244608244418 1.0 21.839537960178536 4.593741079608614 2.129444482440243 0.9810406036726944 1.1905425986944518 0.5245442645118992 0.057408581378038614 0.4490956206256215 2.8733146077943954 0.016576536632681462 0.1597620436524616 39241.09156610752 -4.593741079608614 0.20950199502175737 DICNDVLSLLEK ddPTM_BT-474_Trastuzumab_2h_R1 6 DICNDVLSLLEK 12 0 P63104;E7EX29;B0AZS6;E7ESK7 P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;;;; 221.09 6.5145e-11 2046155800.0 1966040.0 1808947.0 1680583.0 1644622.0 1599348.0 1999265.0 2100784.0 1939787.0 2624252.0 1973395.0 False True 1955455.0590875794 1869156.7073634458 1917194.4785106985 1852830.9765731087 1803015.487721715 1861060.5163135875 1999161.052145788 2084543.7559787985 1977540.2577752096 1847451.2415915388 1.0584609840111383 1.0117488707053552 1.037751056888017 1.0029119767063164 0.9759475363303535 1.007366513613818 1.0821184381697426 1.1283349238397273 1.0704153989317748 1.0 20.817104858219366 2.227369299804663 11.778310021318898 1.086061356951987 1.0141286101767106 0.30996943427606727 0.0368948272913034 0.3713629012806991 381.5094729735561 0.01343517941475865 0.010217169367165631 168.7987785947865 -2.227369299804663 -0.07193274677527639 DIDAFWLQR ddPTM_BT-474_Trastuzumab_2h_R1 6 DIDAFWLQR 9 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;;;; 164.72 0.00014434 1986990000.0 1829930.0 2107250.0 1839990.0 1827230.0 1629440.0 1863110.0 1774770.0 1595240.0 2300980.0 1870100.0 False True 1820077.860204338 2177388.542390478 2099044.598520219 2058557.1306498896 1836939.525552457 1734317.5909891922 1688917.594820206 1714284.9092645843 1733934.3105523414 1750748.6169268398 1.039599770410897 1.2436899971467843 1.198941171922647 1.1758153687782764 1.0492308877427026 0.990614857108104 0.9646830952720281 0.979172505230213 0.9903959333670569 1.0 20.73954051708829 3.0792706831961265 2.7136173666404146 0.9822331983534928 1.1739951412593206 0.7430618317064466 0.04960440293468557 0.12438185270697771 1.8586955466785078 0.015008336219598198 0.01825207423779002 1200.2471494215677 -3.0792706831961265 0.19176194290582782 DIDEVSSLLR ddPTM_BT-474_Trastuzumab_2h_R1 8 DIDEVSSLLR 10 0 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;;;;;; 284.04 6.4173e-24 2724218000.0 1389955.0 1595049.0 1420051.0 1427826.0 1418703.0 1531410.0 1624204.0 1442408.0 1976420.0 1571277.0 False True 1382471.6367185167 1648139.2417375175 1619981.8374954376 1608588.6252017017 1599366.4177385154 1425547.2312513816 1545635.0474581823 1550047.8093594122 1489357.7736711577 1470996.756622081 0.9398196362398183 1.1204234369096893 1.1012817194889526 1.093536486712302 1.0872671272309369 0.9691029057908549 1.0507399424914414 1.0537397872438956 1.0124820241556753 1.0 20.48836263494452 2.791913014394058 24.99866105886152 1.0260361050905102 1.0745681744318978 0.1817473411346554 0.05193776070482629 576.5536009019764 270146.86937039206 0.015578403080301069 0.016523374961074908 619.3170185580825 -2.791913014394058 0.04853206934138754 DIDFLKEEEHDCFLEEIMTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIDFLKEEEHDCFLEEIMTK 20 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 ; 176.46 2.5498000000000004e-13 354603000.0 788410.0 659580.0 530180.0 510080.0 484110.0 772180.0 766740.0 695570.0 1189180.0 756140.0 False True 784165.2881605858 681533.7215754698 604824.7355928291 574656.07570032 545758.5389552242 718801.0141162015 729649.8569687608 747476.9654328928 896122.5231956089 707882.4978359772 1.10776193868023 0.9627780368337167 0.8544140269632325 0.811795852358357 0.7709733474462613 1.0154241930173478 1.0307499609035782 1.0559336722096637 1.2659198750288194 1.0 19.43315038014348 2.184967088007614 1.776269815909063 1.1099321142671843 0.9001940183021284 0.3910783354826801 0.10912105295511274 0.37815218030991415 2.3495993520180347 0.061413208386756554 0.03662434817775269 153.0971436193239 -2.184967088007614 -0.20973809596505588 DIDFVEDDSDILHALK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIDFVEDDSDILHALK 16 0 A0A087WTV5;A0A087WWR4;A0A024R0Y4;O75478-2;O75478 A0A087WTV5 TADA2A;TADA2L Transcriptional adapter 2-alpha 0 128.76 5.9036e-05 17158000.0 34844.0 34616.0 34843.0 34898.0 29647.0 43261.0 36882.0 39576.0 50248.0 40325.0 False True 34656.40377553234 35768.172634186114 39748.59153921487 39316.083221827466 33422.36971846381 40270.46889544013 35097.87675707779 42529.36208285603 37865.05368870396 37751.423976030586 0.9180158024644749 0.9474655222779492 1.0529031054418594 1.0414463636336029 0.8853273916153358 1.0667271497098745 0.9297100098624729 1.1265631227542328 1.0030099450750658 1.0 15.20424344317689 1.7486109910034677 24.999999999969326 1.0543410282583572 0.9814864543244434 0.16397639465576042 0.06624098577043037 3.991245881375869 9948.425834867856 0.029502984029061947 0.016360734824262337 56.054565559994465 -1.7486109910034677 -0.07285457393391381 DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_BT-474_Trastuzumab_2h_R1 11 DIDHETVVEEQIIGENSPPDYSEYMTGK 28 0 P25490;A0A494C032;H0YJV7;H0YJU4 P25490 YY1 Transcriptional repressor protein YY1 1 DIDHETVVEEQIIGENS(0.998)PPDYS(0.002)EYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(0.997)PPDY(0.003)SEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(0.993)PPDY(0.006)S(0.001)EYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(0.958)PPDY(0.04)S(0.002)EYMTGK 277.33 8.5483e-62 6731984000.0 1267618.0 1362339.0 1299310.0 1178651.0 1242325.0 1634839.0 1579039.0 1428164.0 1849777.0 1648573.0 True False 1260793.2855336003 1407683.6300636828 1482241.554195026 1327868.0957501887 1400527.7249128255 1521826.4279270566 1502654.8510552389 1534740.8497498485 1393924.2440918998 1543359.659725644 0.8169147596858439 0.9120904652347337 0.9603993112392981 0.8603750184751089 0.9074538887207866 0.9860478199861624 0.9736258438440454 0.9944155531593151 0.9031752484315234 1.0 20.557642871569108 2.817304001159266 4.966529357484315 0.9731768002921891 0.8935188940322842 0.4706420979755477 0.04253738945147781 0.20613952035054509 9.144390107624949 0.013071819636842463 0.013836753284473048 656.604721256144 -2.817304001159266 -0.07965790625990488 DIDIEDLEELDPDFIMAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIDIEDLEELDPDFIMAK 18 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;; 283.83 4.0445999999999986e-39 97180000.0 254747.0 267821.0 239493.0 209990.0 216643.0 291298.0 271990.0 263351.0 372457.0 297991.0 False True 253375.47045705235 276735.2600837869 273211.532689527 236574.71246924027 244231.2019063362 271161.2549017343 258832.80459729893 283003.5888892819 280669.9630181021 278972.9592570698 0.9082438352871695 0.9919787954386615 0.9793477239411089 0.8480202278359168 0.875465502307987 0.971998345731648 0.9278060686834813 1.014448101503981 1.0060830403260286 1.0 18.089765763386065 1.7424712259860293 6.190810659144561 1.007280897584312 0.9297038816142589 0.4087546666661901 0.0428416000862008 0.1605179266261122 16.669443354978206 0.022921136840858 0.01201676980045761 55.26767893431246 -1.7424712259860293 -0.07757701597005306 DIDIHEVR ddPTM_BT-474_Trastuzumab_2h_R1 8 DIDIHEVR 8 0 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;;;; 177.97 0.00025206 39610740000.0 34211930.0 42055300.0 37491110.0 38242730.0 37189970.0 40393100.0 39750500.0 36024430.0 47662400.0 39827000.0 False True 34027736.77018273 43455085.23753427 42769532.40943009 43084255.696884565 41925892.23727793 37600820.07212974 37827616.453343645 38712755.89494894 35916640.16343906 37285206.76238984 0.9126337152167017 1.1654779203576278 1.147091195765404 1.155532165114458 1.1244645230067283 1.0084648400034693 1.0145475843653076 1.0382872795008633 0.9632946490635724 1.0 25.15210000611781 2.734186958754937 24.23954176488478 1.0106290287330653 1.1102055486367723 0.3155064730161502 0.06989032448478016 294.46319701041614 1631958.0785750996 0.02192079146320856 0.021328920317427346 542.2342657496529 -2.734186958754937 0.09957651990370708 DIDIS(ph)SPEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 DIDIS(0.535)S(0.465)PEFK 148.78 0.005679200000000001 0.0 369330.0 338170.0 310540.0 257170.0 269090.0 411860.0 363280.0 324620.0 510830.0 352570.0 True False 367341.5683164209 349425.78402191825 354261.3327379325 289727.6956317661 303357.01647861244 383389.08761415543 345706.7585356325 348844.7927869601 384942.79127130745 330068.6807496365 1.1129246418719037 1.0586456831599982 1.0732958120514517 0.8777800273983892 0.9190724057479256 1.1615433695296995 1.047378253975747 1.0568854700018195 1.1662505827485463 1.0 18.332406726384686 2.7336429384793317 24.996451705834343 1.0838585556704856 1.0074931805491951 0.1904307602406199 0.08038662482200491 799.4539856834039 4063586.7239922266 0.027038114966567443 0.02622805810727416 541.5554596255048 -2.7336429384793317 -0.07636537512129049 DIDISS(ph)PEFK ddPTM_BT-474_Trastuzumab_2h_R1 6 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 DIDISS(1)PEFK;DIDIS(0.003)S(0.997)PEFK;DIDIS(0.02)S(0.98)PEFK;DIDIS(0.034)S(0.966)PEFK;DIDISS(1)PEFK;DIDISS(1)PEFK 321.03 2.4947e-42 6922720000.0 16476900.0 13951000.0 12961500.0 11353300.0 11227300.0 17230400.0 15243700.0 13528100.0 21484800.0 14289000.0 True False 16388190.201155666 14415350.601442419 14786366.53662236 12790626.615919918 12657030.105579285 16039303.00399879 14506303.994411012 14537635.516299903 16190158.921570364 13377063.786571631 1.2250962141338304 1.0776169443038057 1.1053521738802978 0.9561609946690693 0.9461740115409226 1.1990152143925341 1.0844161488542017 1.0867583311438864 1.2102924214073507 1.0 23.67325814899379 2.7176620485118956 24.762526548950735 1.1158314488797012 1.059462811386733 0.07914596599685142 0.09190591133993349 2014.9797353519218 2387528.591797663 0.030266616555645578 0.028561504053089277 521.9898382291308 -2.7176620485118956 -0.056368637492968166 DIDLICSNALEYNPDRDPGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIDLICSNALEYNPDRDPGDR 21 1 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 0 153.83 3.6023e-08 179510000.0 164270.0 240880.0 205590.0 208450.0 194950.0 261740.0 252860.0 208650.0 277230.0 282670.0 False True 163385.58857211287 248897.54518496516 234535.2849796856 234839.74862713975 219775.72694082072 243646.5298696861 240628.19578099583 224220.5225032317 208910.38119167724 264629.75859403727 0.6174120002231462 0.940550097265491 0.8862770620574123 0.8874275889258634 0.8305026921706635 0.9207072219094563 0.9093013463770652 0.8472989723245885 0.7894440228552001 1.0 18.01361578156356 -4.999992958941461 0.01693286331462619 2.0282692798294173 1.5315974274645203e-14 0.22234432123393189 0.08748620423457765 8306.178992917272 10.662093891467967 822.4495295890331 493.5325507153478 1.000016212767856e-05 4.999992958941461 -2.028269279829402 DIDPQNDLTFLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DIDPQNDLTFLR 12 0 Q9NP97;B1AKR6;Q8TF09;H3BQI1 Q9NP97 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 0 ;;;;; 257.8 7.5761e-21 2124683000.0 1476846.0 1608779.0 1552386.0 1531388.0 1546870.0 1586661.0 1717685.0 1499477.0 1793679.0 1612714.0 False True 1468894.825229015 1662326.2364875588 1770948.455218999 1725261.5637832505 1743854.7254831912 1476978.859668246 1634594.0143560856 1611375.587929923 1351650.8445172121 1509789.2118060815 0.972913843696004 1.1010320006850527 1.1729772880682505 1.1427168443728717 1.1550319156123188 0.9782682563358721 1.0826637265480965 1.0672851384348674 0.8952579830003575 1.0 20.52591571204696 1.353957721089608 5.496475492581983 0.9493269296189538 1.0892669255440601 0.3943999162591185 0.06774833518244765 0.20245643246530892 8.2697404318199 0.04884710409654134 0.0173194813511494 22.592158230726547 -1.353957721089608 0.1399399959251063 DIEAYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 DIEAYLER 8 0 P18440 P18440 NAT1 Arylamine N-acetyltransferase 1 0 ; 103.87 0.010909 270510000.0 241770.0 354520.0 331200.0 317430.0 308000.0 325570.0 341120.0 273740.0 305750.0 314660.0 False True 240468.33718317203 366319.9838881343 377830.0811579936 357616.6054531692 347221.9743409736 303064.1122093447 324618.72239505366 294167.8688235549 230402.00934009763 294578.1294060206 0.8163142921303964 1.2435410077006464 1.2826141639226236 1.2139957782142812 1.1787092783877153 1.0288072397649988 1.1019783547733366 0.998607294495036 0.7821422785346421 1.0 18.168290797652602 1.7334110365872806 1.5396029778429137 0.8935094173257508 1.1490169760189506 0.3156659437168049 0.13530566538726949 0.41891745998571817 1.9306461411206541 0.10451281112586078 0.04078328140149738 54.12663603699211 -1.7334110365872806 0.25550755869319974 DIEDVFYK ddPTM_BT-474_Trastuzumab_2h_R1 6 DIEDVFYK 8 0 J3KTL2;Q07955;Q07955-3;Q07955-2;J3QQV5;J3KSW7 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;;; 163.77 0.00077691 3778940000.0 4371940.0 4019920.0 3603750.0 3251290.0 3367890.0 4396350.0 4211010.0 4249880.0 5554850.0 4231280.0 False True 4348401.960808193 4153720.607107046 4111126.6756434687 3662902.980637723 3796770.828452026 4092440.6723947283 4007307.358679633 4567027.626053367 4185931.64867651 3961236.087818942 1.097738651371932 1.0485920341582282 1.0378393472394767 0.924686865269502 0.9584813286255123 1.033122131997951 1.011630528915548 1.1529299251052652 1.0567235973509685 1.0 21.917519257079082 1.7876062178172438 24.99999999994393 1.0864137958868776 1.0130382139358103 0.13636605575157879 0.05745810906315621 161.89872750151648 82549.30968042073 0.027229676895704772 0.015311853191844894 61.32057489522256 -1.7876062178172438 -0.0733755819510673 DIEEHLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIEEHLQR 8 0 Q9UNE7;Q9UNE7-2;H3BTA3 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 ; 128.38 0.0011359000000000002 856930000.0 604700.0 724520.0 665780.0 629900.0 625110.0 636900.0 708720.0 606820.0 755000.0 637230.0 False True 601444.3623884865 748635.2102184112 759516.0369364994 709645.2754148984 704714.053182748 592872.6021013339 674436.5060266838 652103.9897695236 568940.3664816803 596561.4358399498 1.0081851193442661 1.2549172059108107 1.2731564450979167 1.1895594196693728 1.181293343560703 0.993816506537299 1.1305399000139644 1.0931044995413939 0.9536995392278762 1.0 19.18631119344299 2.805343587737802 7.594113274261523 1.0524617657721371 1.1916143433549116 0.4330252586732659 0.08251486945189564 0.302192430963742 30.842122496373022 0.025263809010533784 0.026786661215139822 638.7686417650983 -2.805343587737802 0.13915257758277444 DIEEIIDELK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIEEIIDELK 10 0 E7EPT4;P19404 E7EPT4 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial 0 ; 176.83 5.5645000000000015e-06 28825000.0 101213.0 81008.0 76872.0 62673.0 81340.0 174585.0 91718.0 81438.0 146987.0 104787.0 False True 100668.0804538214 83704.30230962997 87694.90941659808 70607.39537399258 91698.16686004818 162516.34987888433 87281.24994321502 87515.3170937849 110764.02337489113 98099.4039473357 1.026184425216943 0.853260049924119 0.8939392686185613 0.7197535615190679 0.934747441577484 1.6566497179343784 0.8897225307308864 0.8921085508406064 1.1290998611403835 1.0 16.581956750195438 2.98511836717157 24.995943902950984 1.0929496980038005 0.8675694707887086 0.2222542016515181 0.21383428480954655 1176.9052732011157 1976793.5956226024 0.06737251545948698 0.07380026003777354 966.3142125093909 -2.98511836717157 -0.22538022721509188 DIEIIHEELQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIEIIHEELQLK 12 0 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 196.15 2.0993000000000005e-07 522640000.0 720940.0 592080.0 520360.0 416210.0 449230.0 596800.0 580060.0 596250.0 732150.0 633400.0 False True 717058.5391439637 611787.0248800821 593622.1649497985 468902.14332502737 506436.77770518087 555544.6207160885 552000.2817556134 640745.202696151 551721.442807367 592975.8697189777 1.2092541632154292 1.0317233063295128 1.0010899182645105 0.7907609183949573 0.8540596735330742 0.9368755949198597 0.9308983888622931 1.08055864566599 0.930428152276817 1.0 19.177613872049438 4.6642168196661995 1.8610782029401471 0.9410491867745145 1.2665878598339588 0.5510429493659335 0.07475466634724154 0.6024197230978883 2.442276814199845 0.022001760929404167 0.32389282372436173 46154.794289065125 -4.6642168196661995 0.3255386730594443 DIEIIHEELQLKDEEMIGPIIDKLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIEIIHEELQLKDEEMIGPIIDKLEK 26 2 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32 OLA1 Obg-like ATPase 1 0 215.91 2.4525e-34 61513000.0 84995.0 60257.0 64768.0 57242.0 45515.0 93822.0 89421.0 78612.0 156610.0 87213.0 False True 84537.3963638322 62262.61781887432 73886.77142645212 64488.83133084552 51311.065461459155 87336.305973232 85095.36460860731 84478.42662364765 118015.56396648477 81646.99167319422 1.0354012393035534 0.7625831220835532 0.904953996617491 0.7898494483296198 0.6284501658902547 1.06968186069623 1.0422351499393363 1.0346789868484896 1.445436770516443 1.0 16.31711210945008 2.5832767824648775 7.05058891192268 1.1119856744231105 0.8237770574360077 0.4873063256279384 0.15136817318291082 0.23119900234479193 13.475698239938527 0.04852988672672672 0.04562725469255907 383.06880109871395 -2.5832767824648775 -0.28820861698710276 DIEIS(ph)T(ph)EEEKDTGDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 2 DIEIS(1)T(1)EEEKDTGDLK;DIEIS(1)T(1)EEEKDTGDLK;DIEIS(1)T(1)EEEKDTGDLK;DIEIS(1)T(1)EEEKDTGDLK 152.06 1.3375e-06 2335520000.0 4928050.0 2749060.0 2357820.0 2154990.0 2355360.0 3771800.0 3389590.0 3649880.0 5805070.0 3221950.0 True False 4901517.926357824 2840560.8002581387 2689780.5614611735 2427811.5130438954 2655301.134687522 3511064.3438621648 3225622.582208757 3922252.5793151055 4374488.282452729 3016322.3925498244 1.6249980235747827 0.9417298387182322 0.8917417342737652 0.804891254011997 0.880310785493617 1.164021575589642 1.069389197313886 1.30034262551075 1.4502721238477394 1.0 21.524359205250263 1.9877359472538012 2.0306038567669558 1.277919313890806 1.0154516072268231 0.10571980709528273 0.24213968161033347 0.592374556000332 4.542141048120511 0.1409542037276109 0.0727058720859573 97.21559694151988 -1.9877359472538012 -0.2624677066639829 DIEIS(ph)TEEEKDTGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 DIEIS(0.5)T(0.5)EEEKDTGDLK 168.27 3.6545e-09 386600000.0 294120.0 208170.0 178230.0 215200.0 196860.0 264860.0 250330.0 220710.0 372940.0 258500.0 True False 292536.49059980415 215098.8126085776 203323.2347970687 242444.29793504716 221928.95411936403 246550.8516133765 238220.581546534 237180.50094267132 281033.9341399712 242002.3086870155 1.2088169414042456 0.8888295891704384 0.8401706409339635 1.00182638442761 0.9170530451690336 1.0187954526179488 0.9843731774254582 0.9800753646917465 1.1612861698085526 1.0 17.884661285223544 1.3562646481598135 9.03298643381463 1.0802203798023253 0.9723655494933117 0.13684452586050344 0.0998038214819861 0.450562884653455 33.00692198106626 0.06396143009789454 0.023375617124760037 22.71248472097277 -1.3562646481598135 -0.10785483030901366 DIEIST(ph)EEEKDTGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 DIEIS(0.467)T(0.533)EEEKDTGDLK 64.87 0.095283 433400000.0 186930.0 154650.0 140580.0 142180.0 125920.0 178980.0 145290.0 147760.0 246400.0 184740.0 True False 185923.58964987524 159797.43176210078 160372.4420567353 160179.97342195633 141955.16561368646 166607.53387360173 138261.76763830127 158786.60151007693 185678.02159084246 172949.7350361288 1.0750151748485548 0.923953030218401 0.9272777551421739 0.9261648963410963 0.8207885694883102 0.9633292230184556 0.7994332434763124 0.9181083826286682 1.073595293754308 1.0 17.39999327789986 1.2516248074095555 23.627922580984052 1.036797591436366 0.9125011057857559 0.28906732547004554 0.07312019219561244 117.90365404195524 213245.97462299763 0.04825037569826385 0.01734116965272133 17.849448717281042 -1.2516248074095555 -0.12429648565061013 DIELHLESSSHQETLDHIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIELHLESSSHQETLDHIQK 20 0 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-3 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 174.02 1.3987e-12 130880000.0 88450.0 104100.0 106100.0 108180.0 117480.0 102960.0 110830.0 62091.0 139970.0 102970.0 False True 87973.79502771894 107564.905570221 121037.95776226773 121875.57690805485 132440.3816414857 95842.61754177016 105468.72948828504 66724.54571170946 105476.26900190835 96398.36644294775 0.9126066994069365 1.1158374310614696 1.255601751653153 1.2642908941842441 1.3738861614410136 0.9942348722111748 1.0940924974149377 0.6921750665889096 1.0941707094625224 1.0 16.55672107844632 2.2743515727469648 2.270819552568503 0.9059295031196183 1.1844164816898326 0.2690205234441072 0.15881238160258626 0.3266876101568472 3.4475442546436113 0.07119554421079076 0.05020336381085126 188.0838788896171 -2.2743515727469648 0.2784869785702143 DIELPSTIYEALHLPDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIELPSTIYEALHLPDIK 18 0 O43422 O43422 PRKRIR 52 kDa repressor of the inhibitor of the protein kinase 0 74.12 0.019076 81719000.0 87533.0 87884.0 76881.0 81577.0 70765.0 101320.0 92417.0 88697.0 120970.0 105480.0 False True 87061.73205383058 90809.16581300004 87705.17653836857 91904.63983572178 79776.50329298383 94315.98688162534 87946.43664277582 95316.02053424001 91158.56441495218 98748.17609402863 0.8816540770426975 0.9196034742609421 0.8881700909073516 0.930697086984266 0.8078782459437038 0.9551162422667642 0.8906132763306197 0.9652433523782707 0.9231417533033767 1.0 16.591466480998445 1.2674790741682165 0.6813957748645275 0.9957582906585893 0.8919935174862327 0.39853076788684894 0.039224061286484334 0.6247870522517484 0.6818536131510768 0.03532900751415164 0.015234930154434882 18.513096894603592 -1.2674790741682165 -0.10376477317235666 DIELQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIELQIR 7 0 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;F8VZ52;B4DDQ3;F8VUJ9;F8W1W3;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 76.774 0.092701 79475000.0 68100.0 66219.0 57316.0 67538.0 58924.0 61517.0 64592.0 53880.0 83045.0 67027.0 False True 67733.35716662127 68423.05938476915 65385.59460039715 76088.30387517287 66427.62213008947 57264.474585441654 61467.43819459809 57900.79919709628 62579.67249598824 62749.27947529821 1.0794284449638196 1.0904198415808817 1.04201347245966 1.2125765349246072 1.058619679549297 0.9125917470970213 0.9795720159431516 0.922732494799234 0.9972970688950025 1.0 15.937311272821908 2.9104010174990234 5.306878890795112 0.9572533473688527 1.104374841211147 0.6622878214556139 0.04868765746079874 0.1266487672152605 5.735926126110245 0.014533700338125248 0.015578029800092916 813.5814117252219 -2.9104010174990234 0.14712149384229423 DIELVMSQANVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DIELVMSQANVSR 13 0 F8VZJ2;H0YHX9;Q13765;E9PAV3-2;E9PAV3;F8W0W4 F8VZJ2 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form 0 ;;; 215.72 6.0655e-07 378860000.0 296513.0 326341.0 345901.0 348519.0 314572.0 352872.0 337359.0 333457.0 384878.0 363877.0 False True 294916.60695369163 337203.0629077001 394600.85417461034 392641.469665542 354630.8795856783 328478.7892113397 321039.65633346856 358341.2546003362 290029.97400097497 340654.058329227 0.8657363672698943 0.9898695015158409 1.1583624046928165 1.152610573880413 1.0410293695751112 0.964259139675006 0.942421346476953 1.051921284478036 0.8513915126197438 1.0 18.377947868628496 2.775173147076032 6.024077992436656 0.9706899817040598 1.051784560190861 0.15327977465955844 0.09087082035378151 0.41069029107327415 44.218962562531985 0.029777649305451574 0.031123743708635285 595.8996729592708 -2.775173147076032 0.08109457848680124 DIENYIQDGKDDYKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIENYIQDGKDDYKK 15 2 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 123.02 5.9223e-05 850470000.0 1197430.0 766530.0 670490.0 646450.0 656160.0 1048580.0 976370.0 982090.0 1777390.0 1045220.0 False True 1190983.1699269812 792043.4876728291 764889.1639964458 728290.5037179887 739718.0866349778 976094.1326918153 929139.2530043935 1055378.5427519719 1339376.050305795 978513.1647421364 1.2171355612173458 0.8094356991932276 0.7816851030287507 0.7442827853112352 0.7559613026053796 0.9975278492538641 0.9495419034543555 1.0785532385045544 1.3687869500036367 1.0 19.900231735182025 1.8255662864293785 1.6605472895509175 1.184203470061933 0.8610319900640145 0.3652608987407562 0.15773363954739808 0.36056112946793367 1.8958448285382534 0.1113934834872286 0.04743410339889948 66.921595477889 -1.8255662864293785 -0.3231714799979185 DIEQFTEFFENPAFRPDGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIEQFTEFFENPAFRPDGLK 20 1 Q9H9T3-2;B4DKA4;Q9H9T3-4;Q9H9T3-5;Q9H9T3 Q9H9T3-2 ELP3 Elongator complex protein 3 0 108.18 0.00019686 135820000.0 49081.0 52240.0 45760.0 47060.0 52037.0 55063.0 50601.0 46479.0 75373.0 61725.0 False True 48816.75334941174 53978.776820253144 52202.61024694982 53017.7911748295 58663.60350253656 51256.62441435986 48153.2363154084 49947.49899557974 56798.33409645519 57785.657654568844 0.8447901318563954 0.9341206626552132 0.903383510126451 0.9174904868567786 1.0151931445206681 0.8870129110714938 0.8333077491868114 0.8643580608557914 0.9829140378739708 1.0 15.81842384116403 3.813143143868814 0.007393508874864241 1.804082924830689 4.545539604897537e-06 0.13431345473627454 0.0567691915837562 27672.990990597285 44.3089527256521 5199.881744780969 5615.138123812703 6503.440090170421 -3.813143143868814 -1.8040783792910842 DIEREDIEFICK ddPTM_BT-474_Trastuzumab_2h_R1 6 DIEREDIEFICK 12 1 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ;;;;; 220.31 2.7234000000000005e-11 4296840000.0 3552410.0 3471120.0 3104440.0 3048810.0 2989700.0 3945340.0 3719600.0 3562330.0 5348850.0 3898180.0 False True 3533284.219269857 3586654.130863653 3541518.1677237935 3434789.033398467 3370420.5736597693 3672607.9321313794 3539668.7377481265 3828169.153745214 4030697.588417926 3649394.815000195 0.9681836025926583 0.9828079209520829 0.970439852976994 0.9411941451991906 0.9235560262776307 1.0063608127670294 0.9699330758072383 1.0489873932001543 1.1044838371147054 1.0 21.799225808717484 1.7162155530554617 3.711802952594725 1.0600941385602014 0.9651438154229482 0.6026615108535476 0.0315413919912936 0.12183188342925476 3.780799591999904 0.017271088959460695 0.00826919159095087 52.02541498168648 -1.7162155530554617 -0.09495032313725316 DIFDCLEGAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIFDCLEGAAR 11 0 Q9Y5U2-2;Q9Y5U2;A6NCC9;E9PME3;C9JHT9;C9JJV1;E9PL88;C9JDU0 Q9Y5U2-2 TSSC4 Protein TSSC4 0 ; 112.75 0.0017046 44251000.0 42914.0 46911.0 35242.0 44726.0 35265.0 45958.0 41019.0 37199.0 53386.0 42654.0 False True 42682.955792193614 48472.404276701665 40203.767271044664 50388.307014139915 39755.78871796898 42781.031633495266 39034.75426220306 39974.97827269458 40229.7356357497 39931.78520207336 1.0688967592156988 1.2138802217684186 1.006811167284281 1.2618596128159987 0.9955925716014509 1.071352843781048 0.9775359169310636 1.001081671415456 1.0074614854349377 1.0 15.28524995050881 3.18413148488802 24.99999945945389 1.0090649779655552 1.133932128968262 0.45206927941273145 0.06953445629919205 77.41546116012347 35557.536581926135 0.01833037281973903 0.02190900401241534 1528.028606734577 -3.18413148488802 0.12486715100270684 DIFQEIFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIFQEIFDK 9 0 P48735;P48735-2;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 134.59 0.0028431 0.0 97445.0 105700.0 111860.0 80537.0 100280.0 171690.0 114140.0 108570.0 145350.0 129910.0 False True 96920.36694715731 109218.16060300083 127608.91569545015 90732.9759423553 113050.06359387301 159821.47441478758 108618.61214285725 116672.0447072892 109530.44009021507 121619.03257845323 0.7969177594356914 0.8980351042715874 1.049251198517247 0.7460425726033123 0.9295425329168557 1.3141156530059632 0.8931053786568336 0.9593239004925248 0.9006027902710035 1.0 16.892009493168338 2.9914579856247117 24.99567351537317 1.009153452056063 0.8808506983753056 0.20170261813411094 0.13217076707152978 751.0008637305051 2197590.0362049174 0.03960740418231517 0.04524456611863847 980.5234522530945 -2.9914579856247117 -0.1283027536807574 DIFQEIYDK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIFQEIYDK 9 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;; 163.94 0.00014572 416298000.0 817623.0 758812.0 690921.0 639824.0 635016.0 745805.0 734197.0 715038.0 1038560.0 752725.0 False True 813221.0086144544 784068.5987084591 788196.6712070096 720825.6527973674 715881.523565286 694249.255786129 698681.0862050923 768397.7664493929 782620.8039910129 704685.4460597057 1.1540198725000386 1.1126504784406 1.118508514138134 1.0229041295345473 1.0158880498642109 0.985190285492724 0.9914793758148587 1.0904124254955723 1.1105959522324291 1.0 19.426619892688137 3.7820809196161846 5.346529077190355 1.0331630114262662 1.1282841073248138 0.5582509893644896 0.03973046664725881 0.17365176028961857 12.4666399810783 0.011480411413144967 0.020719197214956082 6054.536749782336 -3.7820809196161846 0.09512109589854756 DIFYYEDDS(ph)EGEDIEKESEGQAPCMAHACNSSTLGGQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGR 39 1 A0A087WY09;Q15361 A0A087WY09 TTF1 Transcription termination factor 1 1 DIFYYEDDS(1)EGEDIEKESEGQAPCMAHACNSSTLGGQGR;DIFYYEDDS(1)EGEDIEKESEGQAPCMAHACNSSTLGGQGR 242.6 1.5300999999999995e-50 322110000.0 59290.0 59791.0 61856.0 65102.0 54814.0 78541.0 69624.0 67250.0 102992.0 82427.0 True False 58970.789227738285 61781.107290577245 70564.78713800972 73343.9065249416 61794.23799196798 73111.64553562707 66256.02113049137 72268.53648858066 77611.00162209434 77166.43829069496 0.7642025540376562 0.8006214704097216 0.9144491919166199 0.950463804596586 0.8007916311905169 0.9474539340562408 0.8586118861790306 0.9365280825368234 1.0057610969386024 1.0 16.235685897516035 7.999999999999999 0.16335259189423829 1.010347384092214 0.1266424709846494 0.5681330178505097 0.053933537682273505 48.98336141597812 0.5134898008827171 0.15348411689780314 10.483519851378933 99999999.99999979 -7.999999999999999 -0.8837049131075645 DIGISDPQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIGISDPQHR 10 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 0 106.29 0.0024361 141480000.0 173910.0 214350.0 201200.0 222890.0 205320.0 239620.0 231480.0 166840.0 222430.0 232290.0 False True 172973.68788321762 221484.51017268852 229527.21113824923 251107.85114657314 231466.28497301537 223055.63340480704 220282.42806052728 179290.44799635382 167615.1069092983 217465.05332652535 0.7954091254538097 1.0184832311430192 1.0554671089777927 1.1547043872356488 1.06438382366415 1.0257079470598311 1.012955528674171 0.8244563678337223 0.7707680123556359 1.0 17.730424052670166 1.7739307402209044 5.881167343811142 0.848927448494281 1.027634129623301 0.31906767029155925 0.10100907867234825 0.19251399485799983 15.31043368582736 0.049033202179018846 0.026899541937146082 59.419739051824926 -1.7739307402209044 0.17870668112901988 DIGKPIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DIGKPIEK 8 1 O60869 O60869 EDF1 Endothelial differentiation-related factor 1 0 ;; 94.297 0.0095392 1592180000.0 2188580.0 2025890.0 1851910.0 1732500.0 1781310.0 2342880.0 2422850.0 2194750.0 3186120.0 2455270.0 False True 2176796.9284540946 2093320.523973635 2112642.8309097216 1951834.322362775 2008149.2698484403 2180922.220146292 2305647.489314188 2358533.3897146797 2400943.417820678 2298572.5665375963 0.9470211905178457 0.9107045626698929 0.9191107827811824 0.8491506210321118 0.873650586056272 0.9488159094456938 1.0030779636369056 1.0260861127684144 1.0445367062904114 1.0 21.13230678245794 2.3398011103336276 2.500382526421971 1.0239087092097265 0.8991361161418906 0.8106400594020586 0.027001663199401883 0.12128669865695597 1.5542599889857491 0.011761501328509788 0.008976696055349334 218.67599451849443 -2.3398011103336276 -0.12477259306783595 DIHDDQDYLHSLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DIHDDQDYLHSLGK 14 0 O75955;A0A140T9R1;O75955-2;A0A140T9X0;A2AB09;A0A140T9C3;A0A140T959;A2AB13;A2AB11;A0A0G2JJQ6;A0A140T910;A2AB12;A0A140T957;A2AB10;A0A140T9B1 O75955 FLOT1 Flotillin-1 0 ;; 242.41 1.014e-17 2216230000.0 2073490.0 2298230.0 2260780.0 1947460.0 2187750.0 2539040.0 2333720.0 1511800.0 2824720.0 2076020.0 False True 2062326.560226398 2374725.1962406244 2579078.1729479707 2194008.2363224286 2466346.9946898255 2363522.1410572636 2220829.0479238518 1624618.1927648517 2128605.6053087832 1943526.6262298562 1.06112596163758 1.2218639889936715 1.3270094364238205 1.1288799477774423 1.2690060230737157 1.2160996968907674 1.1426800219516002 0.8359124957893487 1.095228424751737 1.0 20.890245441995695 1.9338434656247447 6.526236319269483 0.9640131285733388 1.207689135004514 0.5588312101532102 0.08997206919551769 0.15646576514831959 12.536396686092424 0.037487137495186035 0.02317989563710845 85.8703959858744 -1.9338434656247447 0.24367600643117526 DIHEELPK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIHEELPK 8 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 0 ;;; 117.89 0.0019920000000000003 1504520000.0 1534680.0 1448950.0 1239150.0 1279570.0 1304430.0 1603760.0 1420450.0 1191710.0 2130050.0 1441210.0 False True 1526417.453398978 1497177.4248412272 1413611.5491151186 1441563.4308027304 1470541.4285376521 1492895.8460449618 1351737.4068540498 1280641.4515807636 1605127.7187076854 1349230.743918041 1.131324245522603 1.109652616196369 1.0477166752145906 1.0684335776522285 1.0899109994094385 1.1064792681122362 1.0018578459965488 0.9491641495374613 1.1896613873817783 1.0 20.363705666786892 2.2398904842727716 24.999899449895537 1.0211349561427587 1.089830277101955 0.15204094554226733 0.062467990119803446 55.38829616292438 1041266.9091084849 0.02235889520552165 0.017762184010594078 173.73626640120955 -2.2398904842727716 0.06869532095919628 DIHFMPCSGLTGANLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIHFMPCSGLTGANLK 16 0 P15170-2;P15170-3;P15170;H3BR35 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 202.82 2.9388000000000004e-11 853770000.0 409460.0 389860.0 387370.0 414040.0 323910.0 445470.0 449820.0 342240.0 538140.0 399350.0 False True 407255.5128552823 402836.2544246532 441908.32891960087 466457.42154752294 365158.0185350155 414675.7074235848 428060.4881207288 367779.68665950635 405522.60770655895 373863.14109926356 1.089317100524635 1.0774965759935586 1.1820056067048097 1.247668920172248 0.9767157507459748 1.1091644557533025 1.144965740303015 0.9837281246237055 1.0846819681507185 1.0 18.512150718367533 1.884764605280415 0.7402786634185197 1.009107435555638 1.1293691833195942 0.21751528907611928 0.07354451165522966 0.9801559143174281 1.0288638909276364 0.0668042034272538 0.03388940918720659 76.69456795691606 -1.884764605280415 0.12026174776395626 DIHS(ph)S(ph)S(ph)QLCS(ph)YR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIHSSSQLCSYR 12 0 A0A075B795 A0A075B795 CYP2F1 4 DIHS(1)S(1)S(1)QLCS(1)Y(0.001)R 47.429 0.08316699999999999 1796900000.0 7170.2 20238.0 9927.8 6533.7 19011.0 11898.0 16643.0 15743.0 14944.0 18378.0 True False 7131.596439884111 20911.609595870643 11325.547946015475 7360.865750084645 21431.93816297485 11075.519264879384 15837.91450756589 16917.82260133419 11261.251439340705 17205.1003058026 0.4145047871344816 1.2154308445861246 0.6582668943926945 0.427830446742709 1.2456735376164418 0.643734652400954 0.9205360169986564 0.9833027591026875 0.6545298335484119 1.0 14.070548682566637 3.2494933544307103 24.99978007151647 0.9011875841332674 0.7158427628416737 0.14838137727205414 0.26255151512617925 507.1725218693884 1159739.4141607638 0.07024047432171625 0.0941962640930965 1776.2060885948467 -3.2494933544307103 -0.1853448212915937 DIHTLAQLISAYSLVDPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIHTLAQLISAYSLVDPEK 19 0 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 ; 217.26 3.6389000000000006e-19 791170000.0 2077730.0 2050090.0 1836570.0 1833820.0 1818670.0 2297130.0 2186490.0 1876100.0 3101900.0 2257100.0 False True 2066543.7325375031 2118326.006344427 2095143.0922473907 2065981.4239741992 2050266.8443983735 2138334.8099623756 2080721.1254970687 2016104.1086427697 2337478.308330494 2113049.9455994717 0.9779909541850537 1.0024968935334173 0.9915255891658534 0.9777248418934466 0.970287923703911 1.011966051448789 0.9847003994535344 0.9541204233441825 1.1062106284796558 1.0 21.010895437598958 1.2508656931800115 24.999763090265862 1.053105341698383 0.9835834923449465 0.4902472793415841 0.02824609252318314 147.5816565864418 299839.8704207951 0.017821296253189265 0.006404773423357115 17.81827646900367 -1.2508656931800115 -0.06952184935343664 DIHYSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIHYSVK 7 0 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 ; 124.83 0.004107899999999999 224100000.0 386800.0 539030.0 572950.0 559220.0 500880.0 566350.0 627530.0 508150.0 618280.0 582640.0 False True 384717.5117775198 556971.2876994838 653616.3798293241 630017.1946618818 564664.0990516455 527199.5575444973 597173.9765026027 546070.7333334158 465913.1785275413 545455.4163767998 0.7053143120899132 1.0211123970482838 1.1982947830475055 1.155029679321521 1.0352158620083742 0.9665309789137901 1.0948172088368735 1.0011280792859356 0.8541727967839797 1.0 19.057101754944092 -0.5119228169441908 7.736667521217174 1.000013637820657 1.0171132778838248 0.0 0.13594541557957124 0.0 0.0 0.13116653563230848 0.03091624893678409 0.30766435489514893 0.5119228169441908 0.017099640063167776 DIIHDPGR ddPTM_BT-474_Trastuzumab_2h_R1 8 DIIHDPGR 8 0 P62917;E9PKZ0;G3V1A1;E9PKU4 P62917 RPL8 60S ribosomal protein L8 0 ;;;;;;; 144.09 0.000591 22285320000.0 15447085.0 16715510.0 15535550.0 16161820.0 15269410.0 16881220.0 16910380.0 15053020.0 18929510.0 16784360.0 False True 15363919.610692473 17271875.645610828 17722820.402578697 18207904.754891276 17213878.854616288 15714260.99551749 16092360.315475088 16176352.790086761 14264585.902938588 15713167.774986446 0.9777735355915989 1.0991975579300863 1.12789608412324 1.1587672845876542 1.0955065904673151 1.0000695735288199 1.0241321511943806 1.0294775071286169 0.9078109587581803 1.0 23.905470721518576 2.7412460277073043 7.240352624214811 0.9995546798041075 1.0981112770426125 0.4562894649165897 0.05382133932154751 0.12824018914053054 51.182463744018676 0.017412568531884092 0.01750237883830486 551.1198172172471 -2.7412460277073043 0.09855659723850496 DIIHFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIIHFFR 7 0 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 ; 128.86 0.0037165 1725000000.0 1225280.0 1566460.0 1457970.0 1425260.0 1313850.0 1450000.0 1545450.0 1288690.0 1901010.0 1482180.0 False True 1218683.228621407 1618598.6741549338 1663239.5030975814 1605697.7698648013 1481161.0097009358 1349764.9129328553 1470690.6793076782 1384858.591635228 1432531.5577289278 1387586.0034418597 0.8782758154078413 1.1664852990301537 1.198656875301403 1.1571879262848737 1.0674372658898017 0.9727432458851628 1.059891549539762 0.9980344196324649 1.0323911845288019 1.0 20.40414576269237 2.9911798010182977 7.787996456978666 1.015599186901449 1.1121034496519817 0.18815894342386297 0.08472982043204791 0.2126075279800853 94.51442183658743 0.025159161926804195 0.02837590658637698 979.8955852153786 -2.9911798010182977 0.09650426275053281 DIIHNPQALSPQFTGILQLLQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIIHNPQALSPQFTGILQLLQSR 23 0 Q68E01-2;Q68E01-3;Q68E01;A0A096LNW8 Q68E01-2 INTS3 Integrator complex subunit 3 0 ; 243.91 2.0392e-37 569400000.0 236530.0 252340.0 228050.0 255840.0 214720.0 229678.0 267950.0 237890.0 266860.0 252980.0 False True 235256.54876095365 260738.9843572487 260157.45775386572 288229.3177681341 242063.3192548505 213800.90046385681 254988.23483159798 255642.55978094367 201095.92874079663 236834.59981292544 0.9933369066292751 1.1009328221602976 1.0984774098014516 1.2170067971310152 1.0220775150508212 0.9027435207217913 1.0766511102390106 1.079413903132712 0.8490986067898921 1.0 17.85352033805609 3.0214033800085964 24.990591034999454 0.998102675195197 1.1042348052860238 0.3112043302826478 0.08315074851609087 326.6535817573597 381398.0477905579 0.024617516122998808 0.02942151333931662 1050.5177141473648 -3.0214033800085964 0.10613213009082678 DIILPFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIILPFR 7 0 A0A087WY71;Q96CW1-2;Q96CW1;E9PFW3;C9JJ47 A0A087WY71 AP2M1 AP-2 complex subunit mu 0 ; 124.89 0.0095448 51248000.0 86400.0 107689.0 93924.0 94219.0 100393.0 112088.0 107696.0 100249.0 124328.0 106143.0 False True 85934.83199994244 111273.36326562476 107147.68279795708 106147.1157395082 113177.45347406935 104339.62038677096 102486.33304132763 107730.08943410743 93689.03030984692 99368.86286640572 0.8648064345415287 1.1198011133047159 1.0782822677764707 1.068213046598061 1.1389629528741643 1.0500232907671296 1.0313727065500702 1.084143325449369 0.9428409222696357 1.0 16.600506235104366 1.2404809525086404 24.995177113587797 0.9714204462487332 1.0604803820446524 0.17256956723820005 0.07175903472496355 73.60817552563513 958200.5252350366 0.05063670690295031 0.016376094454182324 17.39726394627723 -1.2404809525086404 0.0890599357959192 DIINEEEVQFLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIINEEEVQFLK 12 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;; 268.91 8.5122e-22 497010000.0 562190.0 523750.0 507220.0 468020.0 486490.0 573660.0 567120.0 582850.0 760130.0 586650.0 False True 559163.2315051808 541182.702136439 578632.1671647268 527271.2840128278 548441.6178478587 534004.2344503872 539686.2389912131 626345.2266523307 572806.1467201592 549209.4947436665 1.0181237521506434 0.985384825491821 1.0535727672275454 0.9600549317868622 0.9986018506541549 0.9723142799991539 0.9826600671627169 1.1404486496444601 1.0429647560763786 1.0 19.06699704147535 1.7659690910522785 24.99999999999892 1.0752221809513016 0.9954640287131854 0.33096647619293784 0.041120061957741615 16.419216540216652 14985.562743891682 0.017926182367079657 0.00994222076532458 58.34035816819082 -1.7659690910522785 -0.07975815223811622 DIIRQPS(ph)EEEIIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIIRQPSEEEIIK 13 1 Q15121-2;Q15121;B1AKZ5 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 1 DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK 207.43 3.2691e-08 931456000.0 358488.0 555955.0 455122.0 609330.0 542860.0 536485.0 626050.0 463780.0 858600.0 649580.0 True False 356557.94043976074 574459.626093106 519199.2216086599 686471.1155239876 611990.0032166921 499399.05469984986 595765.5697567529 498389.61862712156 647009.5346505576 608123.2482665824 0.5863251264543939 0.9446434217579538 0.8537730190197548 1.1288355074086232 1.006358505387077 0.8212135551853278 0.9796789901635001 0.8195536349707897 1.063944745567314 1.0 19.21400421857187 4.739055497585396 7.6485088924783025 0.946759073077468 0.5826790907020386 0.564328599089682 0.09744024359498389 0.07456229340720273 44.93231719068135 0.02303419549088101 0.13886454843976756 54834.70325666569 -4.739055497585396 -0.3640799823754294 DIISDTSGDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIISDTSGDFR 11 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YN52 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 185.6 1.0229e-05 847300000.0 944380.0 1105960.0 1037250.0 777740.0 850750.0 1310900.0 967040.0 1198270.0 1382330.0 991520.0 False True 939295.5630104812 1142771.2100330614 1183285.7840613786 876201.8042565222 959087.9697096861 1220280.5685266734 920260.5807484533 1287690.9920917705 1041673.2937730092 928240.3447170192 1.011909866185392 1.231115644280085 1.274762286293548 0.943938506059698 1.0332323682850384 1.3146170336936656 0.9914033428799104 1.3872387678692553 1.1222021319172146 1.0 19.824138878105494 2.7645884054549197 24.77386474819509 1.1889770364351648 1.107482928576518 0.029094885375400614 0.14797340334969078 2068.8880578182484 1969211.9808181068 0.04472368933493145 0.04742079819938152 581.5518015746887 -2.7645884054549197 -0.08149410785864686 DIISDTSGDFRK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIISDTSGDFRK 12 1 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YN52 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ;;; 222.72 3.869699999999999e-11 3589270000.0 1905490.0 2184880.0 2048330.0 1557420.0 1758930.0 2885760.0 2037700.0 2478730.0 3662200.0 2303920.0 False True 1895231.0535598418 2257602.4100121516 2336717.0595964757 1754589.2123141286 1982919.3095050938 2686274.203548352 1939128.66623007 2663705.4193359045 2759699.8809658396 2156881.8531148527 0.8786902494556441 1.0466972990439154 1.0833774025322318 0.8134841552773256 0.91934535340518 1.2454433698670047 0.8990425986614355 1.2349797535220228 1.2794858823539312 1.0 21.040515721903414 2.7545943262277532 24.70509700852526 1.1340482308797346 0.9537967817094019 0.3321150331113748 0.129954576718581 863.2431180045854 1330102.9925993076 0.03976015863357939 0.04205203310916702 568.3218143384962 -2.7545943262277532 -0.18025144917033276 DIISIAEDEDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DIISIAEDEDLR 12 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;;;; 283.58 7.407999999999998e-28 9009460000.0 3758237.0 4793780.0 4268119.0 4244640.0 4252546.0 4530824.0 4458940.0 4187780.0 5016590.0 4418370.0 False True 3738003.0695713838 4953338.069398792 4869033.056044601 4782010.988787255 4794082.526285098 4217618.80129247 4243244.037395053 4500293.408715962 3780318.613362035 4136385.8438431295 0.9036881980280623 1.1975038732838883 1.1771225509080572 1.1560843618844496 1.1590027398969387 1.0196386315290806 1.0258337102934867 1.0879771807106673 0.9139182745702776 1.0 21.97993933646535 2.7285017389806505 23.326939131427757 1.0222664789826565 1.1283842194932372 0.27312185516486287 0.08713134082545498 386.99287488465035 897449.1396518252 0.0275205124911022 0.02626015156282639 535.1822967176837 -2.7285017389806505 0.10611774051058065 DIIVIGNDITYR ddPTM_BT-474_Trastuzumab_2h_R1 3 DIIVIGNDITYR 12 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;; 196.11 4.8938e-07 301677000.0 376217.0 437703.0 408907.0 419139.0 402636.0 429568.0 473560.0 376161.0 511060.0 482890.0 False True 374191.4894736378 452271.6797579495 466477.5513166407 472201.9544247097 453909.30798945576 399872.97525430383 450652.093625122 404232.04392685456 385116.110853149 452071.5467770713 0.8277262573620049 1.000442702006585 1.0318666473089786 1.0445292516000022 1.0040651999124615 0.884534711607258 0.9968601139309277 0.8941771425534824 0.8518919485172999 1.0 18.786191592236584 2.751727629532274 24.40313833636566 0.9229513755132842 0.989040490330699 0.13193008233424441 0.0707413245878264 1042.9545611327408 1932961.2905572024 0.021738442895079337 0.022915476892222748 564.5827821765998 -2.751727629532274 0.06608911481741475 DIKDTTVGTLSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIKDTTVGTLSQR 13 1 P51665 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 91.657 0.0058655 212840000.0 351220.0 298930.0 267890.0 303680.0 285540.0 423780.0 293640.0 315420.0 469650.0 373090.0 False True 349329.07054421067 308879.70434299886 305606.5834583784 342125.85686298815 321901.82647182385 394485.08607081755 279435.5113862675 338958.24207030615 353911.05048757774 349279.0767815805 1.0001431341467426 0.8843349770308596 0.8749639007133758 0.979520044588684 0.9216178347640421 1.1294266169785667 0.800035072129473 0.9704510364423333 1.0132615264237366 1.0 18.41402069653529 3.7160037252718 24.361508478415942 0.9661600412746886 0.9162660886294051 0.07493223602347132 0.08340198511466355 1580.1013288271315 1706513.911146927 0.021600352075682755 0.03349352637624338 5200.004569510688 -3.7160037252718 -0.04989395264528351 DIKEES(ph)DEEEEDDEESGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DIKEESDEEEEDDEESGR 18 1 Q96EV2;A8MTF7;Q96EV2-2;H7BXM6;H7C0H2 Q96EV2 RBM33 RNA-binding protein 33 1 DIKEES(1)DEEEEDDEESGR;DIKEES(1)DEEEEDDEESGR;DIKEES(1)DEEEEDDEESGR 290.33 2.2623e-49 4936130000.0 1712930.0 1279280.0 1262260.0 1019490.0 1151250.0 1596810.0 1603250.0 1584950.0 2384120.0 1627830.0 True False 1703707.775204413 1321860.0614589087 1439975.2362393965 1148557.3294693343 1297854.8635066422 1486426.2831864208 1525694.672490239 1703227.0172130258 1796585.5715712644 1523940.4957446216 1.1179621382604932 0.8673961123482231 0.9449025340952054 0.7536759687642075 0.851644055086606 0.9753834138124463 1.0011510795536411 1.1176466679434238 1.1789079538131337 1.0 20.53937514133512 2.104965799949273 1.9453516368377195 1.109343157399782 0.9016237276880771 0.4087285032109216 0.09726885205512857 0.3063279712882044 2.237282863643273 0.05289682542100693 0.030039850910963527 127.34027984735256 -2.104965799949273 -0.20771942971170498 DIKPDNFLMGIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIKPDNFLMGIGR 13 1 P48729-2;A0A5F9W493;U3KPX3;A0A590UJ43;P48729;E7ETM0;P48729-3;D6REM4;A0A590UK94 P48729-2 CSNK1A1 Casein kinase I isoform alpha 0 ; 128.73 0.00014768 1592910000.0 2171940.0 2311420.0 2108200.0 2071690.0 1943540.0 2268350.0 2344240.0 2056510.0 3124100.0 2297240.0 False True 2160246.5163652166 2388354.2174171046 2405016.235197104 2333965.7415848416 2191038.2987359 2111544.3036215454 2230840.1553335492 2209977.218946186 2354207.415795259 2150628.1764338873 1.0044723397734323 1.110537955183591 1.1182854672652136 1.0852483786643954 1.0187899157766171 0.9818267642725905 1.037296999908495 1.0275961429142575 1.09466036090857 1.0 21.03632668711911 3.2429445976388203 24.970173790911787 1.0266942325556105 1.084604001091812 0.296189295335721 0.0396853714925836 129.37518251444496 736886.6140696262 0.011125745320147762 0.014574739155716696 1749.623477280874 -3.2429445976388203 0.057909768536201556 DIKPSNILLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIKPSNILLDR 11 1 P45985;P45985-2 P45985 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 0 77.899 0.028596 338180000.0 856180.0 951440.0 908210.0 831430.0 763920.0 1008100.0 1060100.0 870160.0 1161100.0 1018000.0 False True 851570.4220105406 983108.1052423747 1036078.0736971647 936688.952751562 861200.6838914182 938412.419812144 1008818.9130247304 935095.7577829479 874962.4629428876 953030.3684463503 0.8935396501569915 1.031560103215869 1.0871406704344588 0.982853205694349 0.9036445347438038 0.9846616129787796 1.0585380554759527 0.9811814908976721 0.9180845562867732 1.0 19.862162660984303 3.505290717266723 24.74251613621655 0.9770937745148529 1.0115229312455511 0.04132047823612528 0.06012346604097882 2004.6177384805856 1760741.1649962084 0.01646880525611118 0.0254455342281759 3201.0371709285146 -3.505290717266723 0.03442915673069824 DILETHLR ddPTM_BT-474_Trastuzumab_2h_R1 7 DILETHLR 8 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;;;;; 202.28 0.00010497 5254928000.0 4426030.0 5350653.0 5208997.0 4835953.0 4370082.0 5102815.0 4881502.0 4435924.0 6372816.0 5092662.0 False True 4402200.746258161 5528746.250566964 5942378.500186424 5448184.153958567 4926586.0391946435 4750069.40978446 4645365.09911145 4766955.1740456605 4802320.888159359 4767643.951112706 0.9233493086728393 1.159639081118175 1.2463972899653193 1.1427414064103993 1.0333376589593781 0.9963137890521073 0.9743523523872377 0.999855530934334 1.0072733906730933 1.0 22.184845068307126 3.111646783180852 3.873441345990786 0.9956203741459277 1.1299642934472212 0.3612446660498413 0.07621089470836656 0.2353483087455972 6.623282249743693 0.023239199542172847 0.028295850166460582 1293.1436846472077 -3.111646783180852 0.1343439193012934 DILHATFEESLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DILHATFEESLDK 13 0 Q12789-3;Q12789;H3BRD0 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 0 188.09 6.4015e-06 72193000.0 61383.0 65494.0 60860.0 52445.0 61216.0 69913.0 66349.0 64355.0 83237.0 68401.0 False True 61052.52074829243 67673.92819804091 69428.55899539699 59084.53162269302 69011.49474434099 65080.07886749978 63139.44539220635 69157.49688806859 62724.35666865642 64035.58961895765 0.9534154539933823 1.0568174448105048 1.0842183137303816 0.9226827140075419 1.077705306611407 1.0163110741192098 0.9860055286117643 1.0799853222182967 0.979523371954507 1.0 15.966586326785727 DILIACR ddPTM_BT-474_Trastuzumab_2h_R1 1 DILIACR 7 0 P42704 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 90.661 0.03949 62260000.0 303340.0 327870.0 288190.0 283830.0 245900.0 291760.0 296770.0 294650.0 363490.0 304070.0 False True 301706.85114424204 338782.9547483995 328764.64700761455 319762.8488982544 277213.9074365113 271591.3179291652 282414.1013285063 316638.2792023835 273912.7600164582 284663.9922725755 1.0598700901213647 1.190115237419994 1.1549217882562792 1.1232992495660306 0.9738284959169318 0.9540768249645962 0.9920963275821874 1.112322906295755 0.9622318503640509 1.0 18.118900489627404 3.307965936890614 6.333275653979286 1.009548889142786 1.1394936302894538 0.6083031857189763 0.05179994126238449 0.15774085537947194 11.07105740237221 0.015600316768809802 0.021087581573212645 2032.1976129073998 -3.307965936890614 0.12994474114666787 DILIQYDR ddPTM_BT-474_Trastuzumab_2h_R1 8 DILIQYDR 8 0 P62249;M0R210 P62249 RPS16 40S ribosomal protein S16 0 ;;;;;;; 190.26 0.0004359 9347630000.0 4972530.0 7182500.0 6814890.0 7230010.0 6746960.0 6197310.0 6392450.0 5115300.0 6242700.0 6010030.0 False True 4945758.450980023 7421565.170587072 7774367.275914246 8145328.52469038 7606145.363634988 5768904.546598561 6083222.771969574 5497029.660967088 4704270.232894285 5626464.739954441 0.8790170523702722 1.319045886466742 1.3817499327254643 1.44768143073022 1.351851600459257 1.025316040040673 1.0811802887115989 0.9769953096714153 0.8360969899070898 1.0 22.423797291961932 2.6626846014402066 4.892431037924543 0.9857093981480565 1.2934426695993833 0.4693031376583433 0.15492691507882345 0.20214459550600833 8.920027256421509 0.05259097958580365 0.04973037064735406 459.9224418624868 -2.6626846014402066 0.3077332714513268 DILKPEIMEEIVMETR ddPTM_BT-474_Trastuzumab_2h_R1 2 DILKPEIMEEIVMETR 16 1 A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL2 EXOSC2 Exosome complex component RRP4 0 ; 175.39 3.2266e-09 205779000.0 217954.0 239080.0 217845.0 198287.0 207632.0 229930.0 258320.0 235157.0 344710.0 245220.0 False True 216780.55988096597 247037.63327308782 248515.68245731585 223390.1138691761 234072.7044687177 214035.48029700076 245824.07472177033 252705.60944305084 259760.83937735108 229569.8496565958 0.9442902027650373 1.0760891887267487 1.0825275306363635 0.9730812395588371 1.0196143126758916 0.9323327110122158 1.0708029607959781 1.100778738240509 1.1315111272927032 1.0 17.8085736538757 2.022077594969557 24.959650879608812 1.087918427943604 1.009927209808434 0.27214328645615815 0.055878585747133516 276.098944780236 312140.0579811122 0.020709198930967496 0.015293743414188266 105.21498436121887 -2.022077594969557 -0.07799121813517007 DILLQQQQQLGHGGPEAAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DILLQQQQQLGHGGPEAAPR 20 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 0 ; 249.28 2.1981999999999996e-30 1538320000.0 194347.0 244001.0 225151.0 245889.0 243515.0 240728.0 222631.0 233158.0 243683.0 236782.0 False True 193300.6573459818 252122.42578328084 256850.30375242542 277018.5221884328 274525.1918235139 224087.03997275882 211861.48799698992 250557.43391233403 183630.58983490765 221670.37004073095 0.8720184718889749 1.1373753999551426 1.1587038164154746 1.2496867404404652 1.2384388214494841 1.0109020882294004 0.9557501435941181 1.130315404202624 0.8283948359952948 1.0 17.758056417163015 2.621003866530792 8.34509991256859 1.0010299047332865 1.1395268501008202 0.26696131350564245 0.1193492811257817 0.45694903554605754 29.89755046263328 0.03944139204032341 0.037148831485220905 417.83408661368895 -2.621003866530792 0.13849694536753376 DILLVNDHLLNFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DILLVNDHLLNFVR 14 0 Q9NTI5-2;Q9NTI5;Q9NTI5-3 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 0 ; 161.04 4.6589e-06 203270000.0 534210.0 551190.0 561200.0 558670.0 520870.0 624370.0 578720.0 507010.0 703440.0 648920.0 False True 531333.8727163106 569536.0259486092 640212.0819621553 629397.5647182751 587199.7070616338 581208.771508887 550725.1026749109 544845.6607446137 530086.6376130768 607505.3700316368 0.8746159275738427 0.9374995745617026 1.0538377330373478 1.0360362159193723 0.9665753358378618 0.9567138007004277 0.9065353655165732 0.8968573573534667 0.8725628838235154 1.0 19.212537635885717 2.3929147113676033 2.8147546822822482 0.9084124438677332 0.9790449695250324 0.16176402393664502 0.05610551181523392 0.4034930161917532 6.517713947237687 0.022514882052017807 0.018186673268497006 247.1238784777304 -2.3929147113676033 0.07063252565729916 DILQDVHDK ddPTM_BT-474_Trastuzumab_2h_R1 6 DILQDVHDK 9 0 Q92621 Q92621 NUP205 Nuclear pore complex protein Nup205 0 ;;;;; 144.55 9.9288e-05 2466130000.0 2302010.0 2209300.0 1966210.0 1880770.0 1861560.0 2520550.0 2374090.0 2150320.0 3332520.0 2443330.0 False True 2289616.233937354 2282835.2149499487 2243035.277396312 2118875.289160305 2098618.631669426 2346310.311236484 2259246.1967954747 2310787.797503714 2511265.0994801726 2287394.587559945 1.0009712562884827 0.998006739792604 0.9806070581766337 0.9263269663589586 0.917471188872623 1.0257566945366374 0.9876941254833967 1.010227011146653 1.097871400561037 1.0 21.125273829001227 1.7979786166581684 1.483964305282597 1.04523452637686 0.9704281123408701 0.35534010578904274 0.03835066840951491 0.43615334696716174 1.8276285048224283 0.030069007973433107 0.012266401994157622 62.8027435887709 -1.7979786166581684 -0.07480641403598998 DILQDYTHEFHK ddPTM_BT-474_Trastuzumab_2h_R1 4 DILQDYTHEFHK 12 0 B4DQA8;E9PCW1;K7EJC8;G5E9T8;O95249;O95249-2 B4DQA8 GOSR1 Golgi SNAP receptor complex member 1 0 ;;; 187.57 5.9653e-06 824613000.0 1270520.0 1999900.0 1842890.0 1686380.0 1744060.0 1994210.0 1768390.0 976703.0 1627030.0 1740820.0 False True 1263679.661488042 2066465.4625349196 2102352.893312965 1899875.535091562 1966155.7031464912 1856354.956565399 1682846.219794173 1049589.537457342 1226070.2575850172 1629719.377209015 0.7753970893149492 1.2679885208666148 1.2900091406616034 1.1657685130707622 1.2064381946011111 1.1390641741920686 1.0325987672037997 0.6440308387661331 0.7523198623831366 1.0 20.636192136257264 1.9352342140533718 4.437183340463504 0.7687309392902802 1.1537641770495954 0.48022125546117334 0.15753196022096497 0.1625218874597117 6.086580355470801 0.0707488737529569 0.041846698970100495 86.14582094396464 -1.9352342140533718 0.3850332377593152 DILVDLGHLEGADAGEEDLEQQFHYHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DILVDLGHLEGADAGEEDLEQQFHYHLR 28 0 Q9NPA3 Q9NPA3 MID1IP1 Mid1-interacting protein 1 0 ;;; 193.77 5.8278e-19 390128000.0 130201.0 158897.0 153068.0 153798.0 157949.0 159018.0 152462.0 40118.6 171790.0 105436.0 False True 129500.01228269117 164185.790589735 174618.64390909352 173268.8110307357 178062.86891293002 148025.459948108 145086.83059860076 43112.45365012296 129454.65636806346 98706.98421169893 1.3119640248044635 1.6633654842255368 1.769060672896107 1.755385522255674 1.8039541004619781 1.4996452493233379 1.4698740089903872 0.43677206830328014 1.3115045242433843 1.0 16.590864548639402 1.9209020458979444 6.628395578218443 0.869738002025863 1.6414966385912444 0.6372624887391827 0.24190249067385391 0.13817825568501252 9.638924062705849 0.10214333181891319 0.06300083676955948 83.34931709870807 -1.9209020458979444 0.7717586365653814 DILYIGDHIFGDILK ddPTM_BT-474_Trastuzumab_2h_R1 2 DILYIGDHIFGDILK 15 0 P49902-2;P49902;Q5JUV6 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 0 ; 188.25 3.0676e-07 404410000.0 1250200.0 1030940.0 960080.0 858700.0 836370.0 1100810.0 1047640.0 992210.0 1379730.0 1100630.0 False True 1243469.0621102767 1065254.2146836105 1095250.918835044 967411.331955506 942876.7619466244 1024713.5957280105 996961.6508265528 1066253.7485402909 1039714.0289347937 1030386.8511032504 1.2067982629813996 1.033839099890519 1.0629511796102042 0.9388816743145396 0.9150706464635805 0.994494053015947 0.9675605329775814 1.0348091567731452 1.0090521126328005 1.0 19.974754657593174 5.134398453312203 1.2015219377150375 0.9853099115019726 1.5236678408873672 0.7398971404657334 0.039016495961762085 1.8619937354290168 1.203232878148436 0.011822527945315341 1.5692946106095347 136269.43439134836 -5.134398453312203 0.5383579293853946 DIMERGDLVPSGIVLELLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DIMERGDLVPSGIVLELLK 19 1 Q9Y6K8-2;Q9Y6K8-3;Q9Y6K8 Q9Y6K8-2 AK5 Adenylate kinase isoenzyme 5 0 ; 60.317 0.058019000000000015 285300000.0 540820.0 690750.0 613360.0 661570.0 598910.0 781900.0 839610.0 713350.0 1115970.0 957410.0 False True 537908.2852107503 713741.1961828077 699715.7565793078 745324.6941677002 675177.6384823134 727849.0933946206 798994.8566783273 766583.7993179039 840954.1467318687 896307.27412006 0.6001382569820556 0.7963130689567541 0.7806650428741039 0.8315504243780848 0.7532881389868912 0.8120530920706613 0.8914296243581554 0.8552689701982942 0.938243134931005 1.0 19.773633879547223 7.197721451047223 0.11349948446444505 1.0840664393757786 1.8673515719265743e-14 0.7828080296473845 0.04831419115082415 39.60655508669152 0.3742674403657657 0.4148979925278528 6.62811739392727 15765997.415997228 -7.197721451047223 -1.08406643937576 DIMLATGKLS(ph)PDAIPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIMLATGKLSPDAIPGK 17 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 DIMLAT(0.027)GKLS(0.973)PDAIPGK 64.723 0.043674 0.0 166520.0 153590.0 146540.0 137790.0 175120.0 174530.0 169840.0 176450.0 258070.0 188360.0 True False 165623.47482211134 158702.15030288429 167171.55825148648 155234.19987207316 197420.49398243937 162465.1518994282 161624.1903481941 189617.59499494496 194472.10646083095 176338.70353689068 0.9392349580672874 0.8999847856411354 0.9480139918149824 0.8803183689030447 1.1195528265928205 0.9213244094507018 0.9165553965546863 1.0753033292845793 1.1028328016495068 1.0 17.427989632433412 2.6417868115244394 0.5539954895430853 1.0526811911978773 0.913619887945108 0.26349999556878934 0.07207640829845378 1.2324602341674469 0.7912755563819506 0.06313107742123801 0.06885997106982954 438.31548263348833 -2.6417868115244394 -0.13906130325276933 DINAVLIDMER ddPTM_BT-474_Trastuzumab_2h_R1 7 DINAVLIDMER 11 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ;;;;;; 193.28 2.3747e-06 494562000.0 377121.9 467744.9 439888.3 425125.0 401552.7 456350.0 430327.0 397282.0 502521.0 459790.0 False True 375091.5175925821 483313.5062387374 501820.749062354 478945.78141095163 452688.0561556775 424803.59863235074 409510.4390012199 426929.2001971199 378681.4329864119 430445.80855397624 0.8714024161430465 1.1228207979591274 1.1658163213347392 1.11267381838356 1.05167258493333 0.9868921713035614 0.9513635186201815 0.9918303110705854 0.879742409987776 1.0 18.715472093820562 2.7247328733699696 2.6476986745722093 0.9595169173872334 1.0792131177369302 0.2975658133506621 0.0793987624528104 0.34314462912121924 4.787788117053611 0.027535353710915148 0.027211749500127468 530.5580072764355 -2.7247328733699696 0.11969620034969675 DINAYNCEEPTEKLPFPIIDDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DINAYNCEEPTEKLPFPIIDDR 22 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;;;;; 282.18 8.9701e-46 6826580000.0 2040140.0 2540640.0 2306430.0 2419850.0 2237020.0 2628610.0 2893010.0 2481450.0 4069210.0 3032800.0 False True 2029156.1129208605 2625203.666550688 2631155.296151059 2726202.761887186 2521891.237143656 2446900.3777823653 2753064.053928569 2666628.3995477813 3066407.720120423 2839244.1074892883 0.7146818082912992 0.9246135827581681 0.9267097849074204 0.960186112457212 0.8882262819499996 0.8618140199104373 0.9696468319390377 0.9392036396285245 1.0800084825506648 1.0 21.437075461191892 4.7616957322127815 3.2063551365229195 0.9458869168673715 0.6743429966196183 0.6064502219179353 0.05703048361163404 0.2670246222786007 4.128569116090128 0.013840090882648984 0.18611800088782884 57769.1173730666 -4.7616957322127815 -0.2715439202477532 DINLQDEDWNEFNDINK ddPTM_BT-474_Trastuzumab_2h_R1 2 DINLQDEDWNEFNDINK 17 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 295.3 9.5148e-46 167323000.0 300150.0 260090.0 250670.0 230600.0 232730.0 296680.0 304770.0 256510.0 365150.0 316040.0 False True 298534.0257497997 268746.9384222751 285962.1571373011 259793.93635604964 262366.7860012173 276171.20990959933 290027.1107655384 275652.07873138733 275163.6752593186 295870.05662454315 1.0090038483638684 0.9083275999210455 0.9665126657280663 0.8780676872811302 0.8867635643648751 0.933420613969255 0.9802516485592884 0.931666022159139 0.9300152857593805 1.0 18.174604171153913 2.4593715263395683 24.415163118595153 0.9536726350601188 0.9259559081986519 0.10445521052125883 0.04071672826627487 466.35303984333535 641474.4977569852 0.013996563476119986 0.011712836944360327 287.9860998851468 -2.4593715263395683 -0.027716726861466867 DINTDFLLVVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DINTDFLLVVLR 12 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 130.1 0.00051766 226510000.0 192345.0 268960.0 262971.0 276769.0 213925.0 239020.0 262481.0 211488.0 276100.0 247735.0 False True 191309.43589153836 277912.17101024656 299995.03101509286 311807.927022235 241167.08071718478 222497.1099925589 249783.7912552066 227270.30847430386 208058.854550453 231924.34020339587 0.8248786467335056 1.1982880743199258 1.2935038674767794 1.3444381333532385 1.0398523954220722 0.959352130946802 1.0770055054857464 0.979932974154371 0.8970979689668922 1.0 17.82329471161781 3.018120301160638 24.665492809593378 0.9902355309290644 1.178713110999103 0.2861903322213535 0.13549266177847402 262.85156635824137 357792.7753044548 0.040093211993316155 0.047912482650505475 1042.6061951279828 -3.018120301160638 0.18847758007003856 DINVSVGSQQPDTKDS(ph)PVCPHFTTNGNENSSIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEK 34 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 DINVSVGSQQPDT(0.001)KDS(0.999)PVCPHFTTNGNENSSIEK;DINVSVGSQQPDT(0.045)KDS(0.954)PVCPHFT(0.001)T(0.001)NGNENSSIEK;DINVSVGSQQPDT(0.024)KDS(0.976)PVCPHFTTNGNENSSIEK 315.7 1.0139999999999996e-104 3375970000.0 930810.0 673347.0 630995.0 567989.0 588444.0 1056220.0 922700.0 833660.0 1401360.0 969850.0 True False 925798.6223827127 695758.9478481428 719833.6112931394 639896.349162775 663378.8554191564 983205.9974744411 878065.4759437022 895871.9424397048 1056013.605261945 907953.3426696412 1.0196544016905111 0.7662937236426858 0.7928090326498757 0.7047678763771028 0.7306309963776704 1.0828816319829118 0.9670821557437519 0.9866938094038911 1.1630703425321 1.0 19.79225863756027 2.7370771485499072 24.999288372518315 1.0286967585810607 0.7947965927567817 0.6054442720487858 0.09538143389726542 95.1160444316443 1602876.9333788422 0.03035180103906226 0.03006225617928348 545.85481873015 -2.7370771485499072 -0.23390016582427897 DINWDSSQWQPLIQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 DINWDSSQWQPLIQDR 16 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 ;; 361.92 1.1334999999999993e-87 605800000.0 489496.0 550674.0 548111.0 563436.0 556144.0 567616.0 517129.0 507146.0 565266.0 542992.0 False True 486860.607924118 569002.851200537 625280.2645337825 634766.9398296059 626965.6418762554 528378.0419443419 492113.49464537867 544991.8097552076 425963.76847633603 508337.7856811603 0.9577501843026219 1.1193400672312546 1.2300487631387114 1.2487109117395898 1.2333642305108927 1.0394231096481017 0.9680836414431765 1.0721056453140343 0.8379541723532413 1.0 18.955427947380837 2.55439087128927 4.89570315933642 0.9871536614190025 1.164092749757236 0.4622107621497412 0.09543091058208494 0.21902023669979298 9.477463236023835 0.03314892119523127 0.030726082417241826 358.41887413125215 -2.55439087128927 0.17693908833823346 DIPGLTDTTVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIPGLTDTTVPR 12 0 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 129.39 0.00054698 108230000.0 65997.0 63878.0 64603.0 64481.0 56761.0 63625.0 67152.0 72046.0 77796.0 73644.0 False True 65641.67948495608 66004.14061493357 73698.5408606576 72644.28798861415 63989.17690119485 59226.753507139896 63903.60121444844 77422.43836217515 58624.218212991786 68943.97687019956 0.9521017275887538 0.9573590560231127 1.0689627173583187 1.053671274655089 0.9281329538281047 0.8590562395123474 0.9268917186886302 1.1229761014212734 0.8503167480948085 1.0 16.07313689910519 -1.1534600754492397 3.9038264622494383 1.0000098267070832 0.9784268246287248 0.0006338847629088207 0.08469752007500576 115559617665.84679 25059006932.997864 11631141.80638956 0.020424147820629696 0.07023279055445443 1.1534600754492397 -0.021583002078358393 DIPRT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DIPRTPSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DIPRT(0.994)PS(0.006)R;DIPRT(0.998)PS(0.002)R;DIPRT(0.955)PS(0.045)R;DIPRT(0.997)PS(0.003)R;DIPRT(0.995)PS(0.005)R 152.54 0.00073637 10941310000.0 2781690.0 2800510.0 2687220.0 2858820.0 2811420.0 3277750.0 2899590.0 2823960.0 3058930.0 2893710.0 True False 2766713.690114811 2893723.2824059525 3065557.2182650464 3220746.3188785836 3169437.672408122 3051166.857493558 2759325.754190532 3034698.2349783247 2305097.689061998 2709030.950370229 1.0212927577430222 1.0681765308035638 1.1316065687053494 1.1888924039197195 1.1699525514741616 1.1262945730009364 1.0185656069427445 1.1202154167207239 0.850893818229346 1.0 21.369345445584873 1.250804084533117 24.98539269658518 0.9254469121470678 1.1071276278577353 0.5672366235933708 0.06294023080751017 137.65068773086168 280908.95573753066 0.04389634116350635 0.015770665195164395 17.815748962693956 -1.250804084533117 0.18168071571066757 DIPSFER ddPTM_BT-474_Trastuzumab_2h_R1 4 DIPSFER 7 0 K7EJR3;R4GMR5;P48556 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 ;;; 209.69 3.6201e-08 639520000.0 956420.0 1088730.0 976700.0 1035740.0 1005170.0 1050040.0 1026490.0 948300.0 1069740.0 1024270.0 False True 951270.7409882508 1124967.7198988167 1114210.8703714118 1166864.577803184 1133172.4413906385 977453.2063282867 976834.7571273999 1019066.9613698289 806116.910781607 958900.2116783343 0.9920435196518209 1.1731853911366017 1.161967488171936 1.2168780062743505 1.1817417783309077 1.0193482016418367 1.0187032448534716 1.0627455797367973 0.8406681956725036 1.0 19.871021162873767 2.6619271673332805 5.039605089272978 0.9984008342914402 1.1514851476632153 0.5008112788046306 0.07799990107091254 0.19885971131714553 9.185876350958695 0.025727631370825767 0.024312241688714636 459.12101022000525 -2.6619271673332805 0.15308431337177508 DIPVTIHNLEEYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIPVTIHNLEEYLR 14 0 Q14669-3;Q14669;Q14669-2;Q14669-4;H7C2Y1 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 0 ; 170.11 3.2249e-06 99934000.0 33380.0 46653.0 39953.0 41086.0 37746.0 44267.0 41234.0 41232.0 46337.0 40753.0 False True 33200.28578886663 48205.81690266595 45578.0351222986 46287.483387357504 42552.72936192985 41206.9264833094 39239.3538908233 44308.9412118536 34917.867233988916 38152.10864960134 0.8702084095478574 1.2635164505689693 1.1946400011831289 1.213235258173369 1.1153441020192338 1.080069436312532 1.028497644814537 1.1613759443494507 0.9152277153193152 1.0 15.21947517590814 2.7474264305178338 2.7202065842946865 1.0529614045952262 1.149454391894012 0.13528522043348856 0.11482709465772105 0.5880452322010221 8.690845353918428 0.03822404143317723 0.03834897481183108 559.0188217647475 -2.7474264305178338 0.09649298729878586 DIPVVHQLLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIPVVHQLLTR 11 0 P30419;P30419-2 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 0 ; 190.78 2.1185e-06 1277240000.0 2114000.0 2556000.0 2301200.0 2319100.0 2061250.0 2466200.0 2298800.0 2041730.0 3009100.0 2470300.0 False True 2102618.4588874816 2641074.914865373 2625188.957611033 2612697.82221732 2323737.9695140664 2295717.3988103466 2187598.261731208 2194094.2602948644 2267547.624874205 2312643.3390697683 0.9091840593687194 1.1420156624443925 1.1351464850896473 1.1297452478202907 1.0047973806669042 0.9926811281387514 0.9459298045547921 0.9487387109062011 0.9805003592928849 1.0 21.141111356858577 3.0582578275993737 4.263541391697032 0.9685581838774932 1.087212334578574 0.3691043832680633 0.06450895052241166 0.20524003009651318 7.682343145165064 0.01916493760789133 0.022858043393805177 1143.5570287959895 -3.0582578275993737 0.11865415070108087 DIPVVIDADGLWLVAQQPALIHGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIPVVIDADGLWLVAQQPALIHGYR 25 0 Q8IW45-2;Q8IW45;Q8IW45-4 Q8IW45-2 CARKD ATP-dependent (S)-NAD(P)H-hydrate dehydratase 0 ; 200.23 6.7613999999999985e-25 244290000.0 148885.0 208413.0 187617.0 181856.0 177485.0 198005.0 190355.0 193163.0 202459.0 193948.0 False True 148083.4197026784 215349.90071668103 214031.84280380225 204878.95095388417 200086.66271398604 184317.38040363448 181146.80142328344 207577.8039218393 152565.69226160867 181570.07259276323 0.8155717381619888 1.1860429290000964 1.1787837045361893 1.1283740102555313 1.1019804082072102 1.0151308405159538 0.9976688274480722 1.1432379849701766 0.840257924023595 1.0 17.470166903496928 2.7375366442340052 23.91803025271996 1.019082494429622 1.0958588348700389 0.09081320409020699 0.11953927709224133 135.31652031839468 3160702.980776802 0.037160490555098735 0.03693131763171404 546.4326539935539 -2.7375366442340052 0.07677634044041692 DIQLAR ddPTM_BT-474_Trastuzumab_2h_R1 6 DIQLAR 6 0 K7EK07;Q71DI3;Q16695;P84243;P68431;Q6NXT2 K7EK07 H3F3B;HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C 0 ;;;;; 160.17 0.020687 2936650000.0 1518870.0 1871810.0 1668330.0 1756770.0 1822880.0 1814750.0 1669770.0 1715660.0 2498810.0 1783130.0 False True 1510692.5726823206 1934112.0643169605 1903216.3626156873 1979176.9018743115 2055012.9629437502 1689300.6039619998 1588996.845959161 1843691.2611449533 1883011.7578385258 1669329.1167856022 0.9049698813085186 1.1586163835931973 1.1401085283173216 1.1856121611808585 1.2310412262507027 1.0119637805245103 0.9518775117388918 1.1044504301794582 1.1280051003150193 1.0 20.670836986783982 2.700579027020516 24.994840993153222 1.043212927890127 1.1302990556214019 0.1691227737274391 0.09327681475324634 1033.0317810408837 679814.7728244208 0.03083093799741984 0.0290685395488669 501.8558916582292 -2.700579027020516 0.08708612773127489 DIQMAETSPEGTKPER ddPTM_BT-474_Trastuzumab_2h_R1 1 DIQMAETSPEGTKPER 16 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 0 92.773 0.0038163 0.0 80217.0 99185.0 82425.0 76313.0 94465.0 104310.0 89139.0 89928.0 93264.0 111330.0 False True 79785.12058494655 102486.31276640145 94029.7235490567 85974.21797545177 106494.55781207816 97099.29521932836 84827.00602595184 96638.88400513137 70280.33687357281 104224.82408559165 0.7655097649234246 0.983319604187938 0.9021816479329097 0.824891946134137 1.0217772852715257 0.9316330928953005 0.8138848568004307 0.9272156115684058 0.6743147564908059 1.0 16.669339411552567 -0.9619764469951755 4.902445256152702 1.0000009651035024 0.8815793219193583 0.12315824378931639 0.09962218731772308 9.797687171877009e-07 2.0736633952415454e-07 0.08988466118965778 0.021185845134187784 0.10914995299169376 0.9619764469951755 -0.11842164318414417 DIQMPDGIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIQMPDGIRR 10 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 80.834 0.034791 0.0 137440.0 199340.0 190530.0 207320.0 182730.0 165700.0 152210.0 144440.0 172350.0 188540.0 False True 136700.0383110194 205974.91139642513 217354.96788355184 233566.6907430016 205999.5823744358 154245.54901584415 144847.02080133403 155218.84625145848 129876.6518716789 176507.21578278506 0.7744728038724856 1.166948957202429 1.231422562072676 1.3232699281282394 1.1670887304003759 0.873876732641136 0.8206294578890588 0.8793909391357424 0.7358149710519988 1.0 17.429367637883683 2.719903181237199 6.715350081932945 0.8523491398093854 1.150910480828919 0.4562792851050119 0.14693200948831114 0.14854886055500552 31.217179650566475 0.047781254661752995 0.04637363894290995 524.6904761576665 -2.719903181237199 0.2985613410195336 DIQSLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIQSLPR 7 0 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;C9JDQ8;Q9NZN3 A0A024R571;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 0 95.741 0.051487 0.0 210420.0 197270.0 186700.0 182080.0 167230.0 191150.0 212380.0 193380.0 298760.0 195230.0 False True 209287.12209985955 203836.01269776703 212985.73717450871 205131.30933091688 188525.74925013332 177936.2504187002 202106.36802961252 207810.99756374318 225134.60117889647 182770.2542551879 1.1450830604396283 1.1152581339257024 1.1653194774086886 1.1223451549424885 1.0314903265763884 0.9735514739190636 1.1057946428603591 1.13700666670624 1.2317901624438214 1.0 17.479671766219802 -0.8269043314517844 0.0072023047722650346 2.0616397939847788e-07 2.1481347928873915 0.0871858245926016 0.07175741593402007 33601.82892841565 49.733654094417446 7712.602931256903 7126.226164765813 0.14896891977143167 0.8269043314517844 2.1481345867234123 DIREEAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DIREEAEK 8 1 P25788-2;P25788;G3V4X5;H0YJ03 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ;;; 153.05 0.00040799 4273410000.0 5637100.0 5581500.0 5103900.0 5307500.0 4894310.0 5934300.0 6833800.0 5469700.0 9174600.0 6582500.0 False True 5606750.479940688 5767276.853412003 5822484.756105921 5979428.955809764 5517571.367651853 5524075.808839618 6503222.986348839 5877876.788573824 6913642.763341492 6162399.214438223 0.909832402095003 0.9358817325400688 0.9448405650942091 0.9703086002283382 0.8953609098749123 0.8964164145511634 1.05530699327497 0.9538292772078485 1.1219076406382662 1.0 22.555060715842036 2.239460616688429 24.99998737084213 1.0218113200799441 0.927468800402952 0.5666703543085052 0.045554969545931565 19.668429631128756 546363.2477721091 0.016056586364741915 0.012714025208795455 173.56438616027927 -2.239460616688429 -0.09434251967699214 DIRPEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIRPEYR 7 1 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UK73;B1AKN7;B1AKN6;S4R3K4;A0A590UJ82 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 0 86.47200000000002 0.018287 238770000.0 64787.0 85234.0 103140.0 102220.0 108070.0 94831.0 137790.0 110580.0 110540.0 104830.0 False True 64438.19399051235 88070.962164959 117661.21549104912 115161.04151914714 121832.07391892547 88275.55617816251 131124.57129108373 118832.04111386239 83298.89816011264 98139.65965052173 0.6565968765326748 0.8974043977590949 1.1989160743989151 1.1734404004378969 1.2414152887097136 0.899489120835699 1.3361017529306936 1.2108462729239824 0.8487791628455053 1.0 16.582548647681126 4.498881480970349 2.947353284719952 1.1354107057527718 0.6634465970814474 0.47819870487865757 0.14897695717774373 0.2179970963092629 3.478844468962927 0.03615204369434122 0.18435602980994564 31541.437396097805 -4.498881480970349 -0.47196410867132443 DIRPGAAFEPTYIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIRPGAAFEPTYIYR 15 1 Q14694;Q14694-3;Q14694-2;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 0 65.943 0.05476 432320000.0 92757.0 118740.0 88056.0 107600.0 102250.0 118060.0 113770.0 121680.0 133060.0 149420.0 False True 92257.60661827149 122692.18912015427 100453.51940352735 121222.14896752358 115270.93141676801 109898.79008334674 108266.51045639449 130760.3794785203 100269.14591265227 139883.88767510187 0.659529901203143 0.8771002233303845 0.7181207290781296 0.8665912206349129 0.8240472389822294 0.785642949376705 0.7739741313728514 0.9347779908878994 0.7168026824185794 1.0 17.09387027175072 -4.999999999644995 0.14797421060179705 1.670821845604446 0.7444647903384783 0.36743833682928173 0.07989543313645672 140.66393485531233 1.2448065803659585 27.89711560044112 0.3889835843780205 1.000000000817429e-05 4.999999999644995 -0.9263570552659676 DIRPVCR ddPTM_BT-474_Trastuzumab_2h_R1 5 DIRPVCR 7 1 O00148;O00148-2;O00148-3;K7EQN7 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 ;;;; 94.539 0.012883000000000002 4562430000.0 332427.0 316374.0 310634.0 354883.0 319929.0 327687.0 342233.0 281812.0 399636.0 311998.0 False True 330637.24996811216 326904.3173378784 354368.56712086947 399811.151413026 360670.0617822517 305034.7689822262 325677.8823329808 302842.24245234026 301151.0626480433 292086.02052507317 1.1319858765364283 1.119205625624306 1.213233575793299 1.3688130321824337 1.2348076814285303 1.0443319691708475 1.1150067426969654 1.0368255280000427 1.0310355220242113 1.0 18.15603378569608 2.7365184055895355 24.882368646737806 1.0525651730853343 1.2169660927270338 0.5965343758818655 0.06899970335534282 135.47472042628945 1650614.816665472 0.02410201234135309 0.023789323933727513 545.1529990211781 -2.7365184055895355 0.16440091964169956 DIS(ph)ENKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DISENKR 7 1 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 DIS(1)ENKR;DIS(1)ENKR;DIS(1)ENKR;DIS(1)ENKR 91.095 0.017643 1259550000.0 2757980.0 1907400.0 1631760.0 1645490.0 1717100.0 2024280.0 2073870.0 2151450.0 3427240.0 2315660.0 True False 2743131.3421203853 1970886.65595235 1861497.6244878212 1853808.8652841116 1935762.5069509312 1884346.2882425631 1973548.985147249 2312002.1238417355 2582642.624663148 2167872.5962637337 1.2653563437482873 0.9091339866323864 0.8586748260465394 0.8551281419761927 0.892931858766591 0.8692144969636039 0.9103620704226826 1.066484316387598 1.191325832114977 1.0 21.047848542741324 1.6451181498147716 4.3934051889789005 1.104699709979308 0.9257899057833138 0.23494565478818097 0.12181862783890517 0.2108461013510067 9.309159034350424 0.0681521508691018 0.03162789790645921 44.16905929365631 -1.6451181498147716 -0.17890980419599434 DISEEESAPGVLIVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DISEEESAPGVLIVR 15 0 A0A087WUV0 A0A087WUV0 0 57.434 0.070632 783650000.0 387450.0 488180.0 547940.0 413100.0 453770.0 584230.0 520980.0 436110.0 740240.0 504450.0 False True 385364.0122497418 504428.7761889583 625085.1892201408 465398.41764390265 511554.9197944931 543843.5552294903 495778.20706313086 468654.7427217086 557817.7707078131 472255.5691186266 0.8160073431615619 1.0681266864261163 1.323616342707702 0.9854799987059518 1.083216277892098 1.1515873835950072 1.0498091276899173 0.99237525900724 1.1811777503203864 1.0 18.849208284268986 4.728929263692611 5.4816781565815385 1.0920940347643675 0.8072842663589395 0.4171622054235733 0.0984418952971705 0.13256978931298036 15.139835335381528 0.023257374485502563 0.13961231906195476 53570.939600696525 -4.728929263692611 -0.28480976840542804 DISENKR ddPTM_BT-474_Trastuzumab_2h_R1 8 DISENKR 7 1 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;;;;; 176.41 0.0012072 60913000000.0 18810600.0 18928100.0 17598250.0 15218020.0 14881050.0 13616290.0 18716300.0 17063510.0 26393500.0 17276730.0 False True 18709325.819654137 19558110.366221916 20075930.633268863 17144619.77166126 16776063.510606334 12675027.921598973 17810921.065790765 18336875.76294813 19889175.579780456 16174114.300047273 1.1567449983706035 1.209222959810835 1.241238330633671 1.0600036239147357 1.0372168268006676 0.7836613298548241 1.1011991590623733 1.1337174588221215 1.2296917908959208 1.0 23.947183376125448 3.724562762807455 19.683639020294862 1.051670624706509 1.2030841142770903 0.2917870220460006 0.10922189988062078 63.67297742388978 89537.20511569397 0.031437628137666374 0.049212569708007955 5303.502315591546 -3.724562762807455 0.1514134895705812 DISGPS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 5 DISGPSPSK 9 0 Q96GX9;S4R3D6;Q96GX9-3 Q96GX9 APIP Methylthioribulose-1-phosphate dehydratase 1 DIS(0.004)GPS(0.928)PS(0.068)K;DISGPS(0.999)PS(0.001)K;DIS(0.001)GPS(0.999)PSK;DIS(0.276)GPS(0.71)PS(0.014)K;DIS(0.001)GPS(0.999)PSK 219.93 4.9808e-07 4777930000.0 5918100.0 4435250.0 3846750.0 3659550.0 3639870.0 5352350.0 5261150.0 4535780.0 7772980.0 5149670.0 True False 5886237.60716272 4582874.615084755 4388338.963449611 4122848.6547778817 4103385.869300266 4982354.642576666 5006648.074955251 4874262.935824153 5857433.231595723 4821013.651745699 1.2209543536619731 0.9506039489071528 0.910252341198118 0.8551829454548401 0.8511458721579063 1.0334661966311887 1.038505268107327 1.0110452464823807 1.2149795986316558 1.0 22.20090508436801 2.5048155570630772 20.15630774087211 1.0570269116823192 0.9482533080199879 0.1731102877635491 0.11160909039162177 116.46830036741659 84767.0527939999 0.03699190868166722 0.034715091738790595 319.75368415964186 -2.5048155570630772 -0.10877360366233135 DISGPS(ph)PSKK ddPTM_BT-474_Trastuzumab_2h_R1 5 DISGPSPSKK 10 1 Q96GX9;S4R3D6;Q96GX9-3 Q96GX9 APIP Methylthioribulose-1-phosphate dehydratase 1 DISGPS(0.994)PS(0.006)KK;DISGPS(0.991)PS(0.009)KK;DISGPS(0.945)PS(0.055)KK;DISGPS(0.976)PS(0.024)KK;DISGPS(0.989)PS(0.011)KK 166.7 3.3482e-06 12369800000.0 15416700.0 9853600.0 9040240.0 8040620.0 7450810.0 13695600.0 13375300.0 11628500.0 22454800.0 12735700.0 True False 15333698.200156411 10181571.119373024 10313027.212825302 9058561.667576658 8399626.4890892 12748855.40797463 12728285.640392112 12496277.718326526 16921115.41890442 11922896.722418657 1.2860715442854096 0.8539511291940143 0.8649766456027156 0.7597618161485722 0.7044954497756706 1.0692750012673449 1.067549768879494 1.048090745836097 1.4192117748606845 1.0 23.507231451971588 2.547575128343339 7.927538142102595 1.1187429285124588 0.8823345008875255 0.28795209880105777 0.17966046295577656 0.41492855912682747 42.63124644822724 0.05871549008189346 0.055167092634223105 352.8378185435225 -2.547575128343339 -0.2364084276249333 DISILQCHGDCDPLVPLMFGSLTVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DISILQCHGDCDPLVPLMFGSLTVEK 26 0 B4DP64;E5RGR0;O75608-2;O75608;A0A087X1K9 B4DP64 LYPLA1 Acyl-protein thioesterase 1 0 159.1 1.9757e-11 147640000.0 122220.0 109140.0 92716.0 97547.0 102330.0 121560.0 104360.0 96278.0 158740.0 110320.0 False True 121561.98109991854 112772.65892347682 105769.60689808133 109896.44019828072 115361.11894257109 113156.84332146053 99311.7081060853 103462.75324977783 119620.65400702243 103279.28315029605 1.1770219291996518 1.0919194584199974 1.0241125196827834 1.0640705168175415 1.1169821809732459 1.095639317681846 0.9615840183704898 1.0017764462909255 1.158225060808621 1.0 16.656191366647864 2.2880991323720368 24.999788994642493 1.0249990668264388 1.0911965722173391 0.21297811648579756 0.06018482528209553 171.2847442109662 86438.62956430747 0.021303316946436265 0.017823598566637136 194.13289561714765 -2.2880991323720368 0.0661975053909003 DISLDSELHDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DISLDSELHDLR 12 0 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 ;;; 266.74 9.3014e-22 1194990000.0 1443230.0 1885590.0 1729260.0 1770870.0 1722530.0 1778040.0 1818210.0 1630710.0 1998330.0 1854360.0 False True 1435459.8100379289 1948350.723286776 1972724.7770026303 1995061.9604286079 1941883.985264798 1655128.2798559524 1730256.2360632936 1752401.8607775976 1505868.347750116 1736013.1572025325 0.8268715038721682 1.1223133391606381 1.1363535862720893 1.1492205298970861 1.1185882878871796 0.953407681842158 0.9966838263204665 1.0094404259017682 0.8674291099133837 1.0 20.72734645129949 2.732643692030893 24.724814565237555 0.9721949931491523 1.0815516225324957 0.23086707309015564 0.09463954361401115 625.1645314565693 2612339.707578958 0.030342862768414393 0.029302871216581605 540.3108541333327 -2.732643692030893 0.10935662938334345 DISLSDYK ddPTM_BT-474_Trastuzumab_2h_R1 4 DISLSDYK 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ;;; 187.8 0.00046603 7132600000.0 7192000.0 6858900.0 6840200.0 5721100.0 4640500.0 6596800.0 7427500.0 6387700.0 11135400.0 7033800.0 False True 7153279.07110632 7087194.34020739 7803240.703915779 6445390.673402395 5231440.16860159 6140778.743196869 7068203.449194596 6864382.610083372 8391229.876715368 6584896.86206086 1.0863160381934327 1.076280234705047 1.1850209452595157 0.9788142181144499 0.7944604567374072 0.9325550379653181 1.0733962273453859 1.0424434511089735 1.2743145492622316 1.0 22.65072941333541 -0.948701757611702 8.625775103445202 0.9999999999569235 1.04205937049021 0.010895265720027303 0.12481535020122882 9.38847032110295e-10 1.3253506843463927e-19 0.1260099165282339 0.02970082237924339 0.11253775374686857 0.948701757611702 0.042059370533286455 DISMEIDS(ph)PENMMR ddPTM_BT-474_Trastuzumab_2h_R1 3 DISMEIDSPENMMR 14 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR 351.22 6.663099999999996e-82 198526000.0 438948.0 490065.0 455454.0 437844.0 425296.0 486095.0 510051.0 437066.0 536902.0 507683.0 True False 436584.7527397078 506376.5172744517 519577.9643228649 493275.0055068427 479454.92467311263 452492.3967945489 485377.88454596436 469682.08429617825 404589.69621820835 475282.2362907158 0.9185799918528033 1.065422771165208 1.0931987872676452 1.0378570201919375 1.008779390567933 0.952049881615548 1.0212413750912275 0.9882172074465831 0.8512619772533073 1.0 18.858424956249156 2.186245208401009 0.9033561750152087 0.945546987720697 1.031734965926824 0.20924523676627382 0.060124988026706995 0.9103475166850751 1.4004631290338223 0.047087678004749695 0.02605280279707009 153.54836924731333 -2.186245208401009 0.086187978206127 DISPVLKDPASFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DISPVLKDPASFR 13 1 H3BQB1;P07741-2;P07741;H3BQZ9;H3BQF1;H3BSW3 H3BQB1 APRT Adenine phosphoribosyltransferase 0 ;;; 153.09 3.8119e-05 13013470000.0 17129120.0 19542280.0 17175670.0 16726050.0 17315230.0 20236960.0 20805640.0 19014990.0 23388800.0 19644910.0 False True 17036898.721144147 20192732.976242255 19593855.042400084 18843566.215039477 19520221.90509109 18838026.58787978 19799191.70793687 20433985.109962754 17624943.633863214 18391155.024946384 0.9263637165819505 1.097958934545011 1.065395567370419 1.0245993897326964 1.0613918418181565 1.0242981782453167 1.0765605358162975 1.1110767693625228 0.9583380494567169 1.0 24.13250875279418 3.23683937174375 24.97639258689261 1.0505375902814509 1.0361648112825035 0.0 0.057503305672920564 309.0157264422732 4483960.736097843 0.01618158306742981 0.020289212407619068 1725.199691223184 -3.23683937174375 -0.0143727789989474 DISQNKR ddPTM_BT-474_Trastuzumab_2h_R1 7 DISQNKR 7 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 ;;;;;; 133.6 0.005220600000000001 11520610000.0 6554720.0 6523830.0 6314850.0 5143190.0 4641910.0 3934430.0 5374430.0 5236260.0 8396960.0 5956710.0 False True 6519430.115817854 6740971.737811479 7203925.990339842 5794317.326656845 5233029.723743867 3662452.114752011 5114448.288583637 5627016.310389526 6327641.721499361 5576547.6680040015 1.169079958416519 1.2088073372865575 1.2918254122838555 1.039050981291224 0.9383995323430834 0.656759761198796 0.9171352229136844 1.009050158877883 1.134688000212898 1.0 22.41094082334144 3.5284854265953904 3.6420451089632455 0.9346534561392373 1.2203286486607994 0.5343052492123506 0.11666474651863284 0.192282717944127 5.144488604461419 0.03515317584365344 0.05447645929801956 3376.6451761111257 -3.5284854265953904 0.28567519252156204 DISSALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DISSALR 7 0 P13489;E9PMJ3;E9PLZ3;E9PIM9;E9PMN0;E9PIK5;E9PMA9 P13489 RNH1 Ribonuclease inhibitor 0 ; 121.29 0.010358 151360000.0 369180.0 404560.0 401330.0 399300.0 417530.0 409590.0 433600.0 404560.0 522320.0 415740.0 False True 367192.3758997543 418025.53503831534 457833.775577106 449851.3390588491 470699.970605801 381276.0073711498 412625.111487146 434750.3215140543 393601.23472941964 389207.11726707884 0.9434369506860334 1.0740439125923305 1.176324263522999 1.1558147811314443 1.209381714062543 0.9796223924381973 1.0601684634764719 1.1170153427994052 1.0112899206293946 1.0 18.57017856675531 2.725315784519319 24.791456372598365 1.04928219768522 1.115732663140732 0.1917787807386906 0.0767481349402182 1474.7231828129234 2760355.0950493724 0.02621876568825791 0.0248614904934395 531.270601688447 -2.725315784519319 0.06645046545551203 DISSS(ph)LNSLADSNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DISSSLNSLADSNAR 15 0 O94776 O94776 MTA2 Metastasis-associated protein MTA2 1 DIS(0.001)S(0.155)S(0.844)LNS(0.001)LADSNAR 136.36 2.4476e-05 92858000.0 78330.0 78709.0 83599.0 94076.0 76455.0 88961.0 93959.0 84738.0 90352.0 94584.0 True False 77908.27998328104 81328.78148440474 95369.01254446579 105986.01195417046 86191.09106571147 82811.33546166874 89413.84421176383 91061.57985084517 68085.96025477188 88547.56814256366 0.8798466363056622 0.9184756079745013 1.0770370609266136 1.19693870963831 0.9733874444405045 0.9352186310564797 1.0097831717727748 1.0283916516400982 0.7689195952298983 1.0 16.434165065105514 1.273821172889185 24.99999180515174 0.8844591863285044 1.006736177988482 0.18337110373618004 0.09920401555342669 250.8993833313966 177889.53133430722 0.06771727642305155 0.024726595590975776 18.785431398888594 -1.273821172889185 0.12227699165997763 DISTNKVEQIPYGER ddPTM_BT-474_Trastuzumab_2h_R1 1 DISTNKVEQIPYGER 15 1 P49750;P49750-1;H0YIQ2;P49750-3;F8VU51;H0YI23 P49750 YLPM1 YLP motif-containing protein 1 0 128.64 6.455e-05 169790000.0 236280.0 227470.0 225230.0 190430.0 205080.0 314330.0 278860.0 226830.0 388910.0 257640.0 False True 235007.8947331756 235041.20144148121 256940.42626574493 214538.4184747721 231195.72239560666 292601.10695323016 265370.47645135026 243757.20641940128 293068.3416270068 241197.1946232988 0.9743392542363951 0.9744773433562028 1.0652712054426416 0.8894731085485372 0.9585340441321781 1.2131198599146804 1.1002220687757387 1.0106137710270664 1.215057007958655 1.0 17.879853601713815 2.775160310962348 24.89406379711143 1.0996614545664294 0.9730836690237187 0.4322169885620484 0.07730177342860435 569.747966042672 387525.2897552643 0.023443937608860488 0.024865517510760257 595.882060663403 -2.775160310962348 -0.1265777855427107 DITDPLSLNTCTDEGHVVLAS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 6 DITDPLSLNTCTDEGHVVLASPLK 24 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK 294.1 4.3453999999999974e-62 7361310000.0 4724850.0 3344910.0 2902040.0 2597990.0 2690440.0 4838520.0 4463590.0 3719840.0 6545610.0 4777450.0 True False 4699411.93258018 3456243.307309209 3310622.0070161307 2926895.267622086 3033051.5865127617 4504044.501050949 4247669.099130331 3997433.3497647806 4932532.122180333 4472549.050819277 1.0507233971462753 0.7727681168026761 0.7402092116596675 0.6544132293162757 0.6781483114102841 1.0070419462981413 0.9497199585440538 0.8937707120355751 1.102845841629573 1.0 22.09266587384522 2.728291231792005 24.7401265643959 0.9732856806501636 0.7697876299763138 0.46359074262768374 0.11270965044858998 601.5337486398088 1449160.964358184 0.03755671740504611 0.03577844935537023 534.9229509831367 -2.728291231792005 -0.20349805067384985 DITDTLVAVTISEGAHHLDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DITDTLVAVTISEGAHHLDLR 21 0 P42785;P42785-2 P42785 PRCP Lysosomal Pro-X carboxypeptidase 0 ;; 149.53 4.6193e-08 163678000.0 92572.0 132150.0 125715.0 125604.0 137597.0 137837.0 141287.0 75285.0 130442.0 121297.0 False True 92073.60263771619 136548.53286363816 143414.5792656315 141505.4535215317 155119.16234868488 128308.65262339704 134452.40804124632 80903.14898948389 98296.31693324955 113555.72161241354 0.8108231036739852 1.2024804292090476 1.2629445458955535 1.2461323085464218 1.3660180231000159 1.1299179891730857 1.1840214313476602 0.7124533034594341 0.8656218774140934 1.0 16.79304087386686 1.7520894407812524 24.999999999962842 0.8394764180897408 1.1851734361845252 0.4697949436893253 0.1511779010009595 3.2591090417015254 6031.308230330119 0.06947759795410736 0.03852902423362122 56.505333274426995 -1.7520894407812524 0.34569701809478437 DITEEIMSGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DITEEIMSGAR 11 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JHW9;F8WCF2 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 236.16 3.5460999999999998e-15 296780000.0 197034.0 223962.0 219404.0 234660.0 205658.0 230860.0 223490.0 194623.0 233600.0 215560.0 False True 195973.1908365356 231416.4397821122 250294.17610624482 264367.93193976843 231847.3272695325 214901.19158598527 212678.93488529147 209146.75653556926 176032.41007963006 201802.77624979906 0.971112461772838 1.1467455705151262 1.240291044343321 1.3100311940828995 1.1488807615934042 1.064907012577332 1.0538949901364563 1.0363918694392962 0.8722992485580601 1.0 17.62258649652363 2.104276114286701 1.1809730403866718 0.9585981255911329 1.1713669101235757 0.46140228540040507 0.09042541179394652 0.4542554529979835 1.1872366137890722 0.06836894811179986 0.03449061969126677 127.13821633897224 -2.104276114286701 0.21276878453244286 DITLFHAMDTLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DITLFHAMDTLHK 13 0 E7ESY4;Q13330-3;Q13330;H0Y4T7;Q13330-2 E7ESY4 MTA1 Metastasis-associated protein MTA1 0 196.5 8.175e-08 250990000.0 301310.0 314660.0 277790.0 284880.0 288310.0 341140.0 354900.0 210490.0 419160.0 329410.0 False True 299687.7804386881 325133.2678840133 316900.41740603524 320945.7787905956 325024.56955274736 317557.79475718224 337732.1311503415 226197.83264656283 315863.63445623976 308386.77177791036 0.9717919439635142 1.054303548785689 1.0276070389759004 1.0407248564530835 1.0539510747459004 1.0297387041811137 1.095157646364821 0.7334874688122577 1.024245082352994 1.0 18.234381356746464 1.768637904776772 24.99999999959924 0.8921078297113683 1.0394673868604016 0.3084559863299525 0.07912621441134804 21.478480610123714 17862.45881952773 0.033857658893418456 0.018779475936142483 58.699973444664096 -1.768637904776772 0.14735955714903337 DITLFHAMDTLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DITLFHAMDTLYR 13 0 Q9BTC8;F6RRE2;E7EV10;E7EQY4;Q9BTC8-2;E9PCS8 Q9BTC8 MTA3 Metastasis-associated protein MTA3 0 ; 229.75 5.2451e-12 924480000.0 676960.0 880650.0 819170.0 828250.0 747540.0 792120.0 881370.0 692140.0 958980.0 821710.0 False True 673315.3225773263 909961.9028858333 934502.0156467186 933106.3650776154 842734.7879832849 737362.6088499121 838734.7659396351 743791.0014157048 722652.2286736455 769267.7642986748 0.8752678245801366 1.1828935841545711 1.2147941965288047 1.2129799380431712 1.095502537730264 0.9585252925841109 1.0903027591495296 0.9668818010251651 0.9394027180281919 1.0 19.553126328783332 2.889938026918226 4.895798279125736 0.9960836936706525 1.134882292345201 0.28584327721067215 0.09836389188732506 0.2855810457605934 10.491026357012965 0.03057774796452784 0.03274287322371309 776.1363553921329 -2.889938026918226 0.13879859867454858 DIVAAIQHNYK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIVAAIQHNYK 11 0 Q5TFE4;Q5TFE4-2;Q5QPD0 Q5TFE4 NT5DC1 5-nucleotidase domain-containing protein 1 0 170.52 1.5614e-05 650840000.0 1225900.0 1230500.0 1289000.0 1039900.0 905000.0 1231800.0 1272200.0 1050500.0 1811000.0 1359200.0 False True 1219299.890610293 1271456.4486470427 1470479.9958111518 1171551.2333766518 1020246.3856447445 1146648.565345304 1210658.8257240492 1128893.644330915 1364703.3161567203 1272454.6923303364 0.9582265663049289 0.9992154976603014 1.1556246400554802 0.9207017274863493 0.8017938805949114 0.9011311540258973 0.951435703778878 0.8871778705640923 1.0724965881947768 1.0 20.27918285720547 3.593225731961409 24.30444382097286 0.9212268188595701 1.0345670211358913 0.24303750308980576 0.08219534875227377 20.176065152890505 4183.739137360664 0.021702728248235503 0.03362171965791814 3919.4554455258362 -3.593225731961409 0.11334020227632113 DIVEAHYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIVEAHYR 8 0 A0A2R8YDT1;P15104 A0A2R8YDT1 GLUL Glutamine synthetase 0 103.56 0.0047486 86706000.0 171060.0 164960.0 155570.0 159470.0 163190.0 188570.0 172160.0 153090.0 210530.0 194790.0 False True 170139.03196655252 170450.59387957404 177472.9037613196 179658.88564917247 183971.27919708943 175534.5997460332 163831.96308493312 164514.3531752683 158647.7024574677 182358.33543189085 0.9329928986443171 0.9347014134335293 0.9732097155910051 0.9851970036010413 1.0088449138416324 0.9625806208984274 0.898406769818991 0.9021487983296101 0.8699777944437377 1.0 17.47641661988222 2.2725795546307603 7.505130585280094 0.9082963727379041 0.968117096952193 0.2698423869693505 0.03790225177388363 0.21732125506626276 38.047686384351465 0.0131416242485532 0.010824891249420137 187.31801831857746 -2.2725795546307603 0.059820724214288856 DIVEDEDDDFLKGEVPQNDTVIGIT(ph)PSSFDTHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFR 34 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 1 DIVEDEDDDFLKGEVPQNDT(0.001)VIGIT(0.989)PS(0.009)S(0.002)FDTHFR 118.81 2.9527e-06 66444000.0 41721.0 37156.0 33255.0 28998.0 26515.0 42713.0 42448.0 37412.0 63761.0 47086.0 True False 41496.37877163889 38392.71499872371 37937.01494235831 32669.143826768064 29891.52808328223 39760.35084558691 40394.62807289294 40203.873414286645 48047.955903627095 44080.93116764728 0.9413680172458495 0.8709597093743253 0.8606219046979156 0.7411173711944005 0.6781056409539006 0.9019852755462795 0.9163742008821297 0.9120468272637998 1.0899941228757748 1.0 15.427867079337783 1.6827914098160597 1.3544260072214656 1.036225465335502 0.8254656514946744 0.5075483034919739 0.07824947974980569 0.35765710820007585 1.256862099597992 0.06949550583649282 0.026008675817151484 48.17163752935095 -1.6827914098160597 -0.21075981384082765 DIVEDEDDDFLKGEVPQNDTVIGITPS(ph)SFDTHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFR 34 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 1 DIVEDEDDDFLKGEVPQNDTVIGIT(0.005)PS(0.487)S(0.368)FDT(0.139)HFR 111.52 5.8928e-06 39794000.0 27063.0 19976.0 20604.0 18580.0 24789.0 27321.0 25928.0 28160.0 43104.0 23637.0 True False 26917.295814981975 20640.889084253 23504.86410682154 20932.226094949678 27945.732214085718 25432.363576716212 24673.76358542142 30261.442193582614 32481.596764008413 22128.466423346177 1.216410360303299 0.9327753984106311 1.0622003195857812 0.9459411101740683 1.2628860798325434 1.1493052925657934 1.1150236583674809 1.3675345419172795 1.4678647920101404 1.0 14.433615850566468 2.619458038816472 1.0535566400778147 1.2871073505417059 1.0427128066554543 0.21533130945634638 0.14973483103016558 0.6300774618149738 1.444639209242579 0.08257531479654562 0.06754466164856629 416.3494917287232 -2.619458038816472 -0.2443945438862516 DIVEDEDDDFLKGEVPQNDTVIGITPSS(ph)FDTHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFR 34 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 1 DIVEDEDDDFLKGEVPQNDTVIGIT(0.022)PS(0.414)S(0.419)FDT(0.144)HFR 60.34 0.015135 20605000.0 21473.0 18528.0 16989.0 16202.0 20143.0 23781.0 18882.0 23120.0 34874.0 19792.0 True False 21357.391753874577 19144.693279587475 19380.903528964805 18253.171538771523 22708.091653085175 22137.075444452545 17968.60552375529 24845.331800981185 26279.769987658445 18528.857615216304 1.152655614145117 1.0332365695263066 1.0459848055094763 0.9851212588401359 1.2255527094361605 1.1947350400206591 0.9697632685675709 1.3408992781388558 1.418315717752449 1.0 14.177486315222893 1.7036474702019908 9.421724054326175 1.2824344965159693 1.0888445898828298 0.25002693901866113 0.12873782149616153 0.1306913508178137 23.54995267925077 0.059412960886210835 0.031915868886385784 50.54142356223986 -1.7036474702019908 -0.19358990663313946 DIVENYFMR ddPTM_BT-474_Trastuzumab_2h_R1 10 DIVENYFMR 9 0 Q13263;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;;;;;;;; 270.1 1.9302999999999998e-16 12815990000.0 3013160.0 3623190.0 3455470.0 3217300.0 2940820.0 3092950.0 3387240.0 2853950.0 4347810.0 3149510.0 False True 2996937.48135355 3743785.688885395 3941970.140516338 3624609.8501227964 3315315.9953942318 2879141.646521153 3223386.2606866276 3066926.241064456 3276350.483169158 2948505.5753688323 1.0164259163656693 1.2697231167409544 1.3369383369821954 1.2293040516531462 1.1244055371947244 0.9764748863196562 1.0932271207536755 1.0401629444708818 1.1111901942933633 1.0 21.49155249149803 3.068365704469491 3.823687655885661 1.0498294204823693 1.225269209214101 0.4636774795075945 0.08488232651064906 0.19521502953389494 5.733475275211577 0.025484558441285134 0.030537525671210326 1170.484601043862 -3.068365704469491 0.17543978873173183 DIVENYFMRDS(ph)GSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIVENYFMRDSGSK 14 1 Q13263;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 DIVENYFMRDS(0.963)GS(0.037)K 80.316 0.011331 0.0 37462.0 31230.0 27104.0 32641.0 28183.0 35273.0 40657.0 31149.0 50943.0 35102.0 True False 37260.308754419486 32269.471671066352 30920.007607808715 36773.347253242886 31771.937996271663 32834.66053371073 38690.265585177345 33473.49655141706 38388.780251226824 32861.76030766586 1.1338500556748188 0.9819763569859237 0.9409114824745349 1.1190315707057403 0.9668361554222653 0.9991753401612874 1.1773643658447546 1.018615443543616 1.1681900145279691 1.0 15.004122142829514 2.3295077862858853 23.96631413485235 1.087821296181921 1.019731031060071 0.1506826195253823 0.07792433768904611 24.89968735042141 6550.1292173253105 0.025555924043386587 0.021381608919426587 213.55403729230477 -2.3295077862858853 -0.06809026512185001 DIVHSGLAYTMER ddPTM_BT-474_Trastuzumab_2h_R1 4 DIVHSGLAYTMER 13 0 P00367;P00367-2;P00367-3 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial 0 ;;; 228.8 6.8215e-12 1341880000.0 633702.0 781900.0 826100.0 673770.0 703020.0 1110040.0 702815.0 534856.0 981360.0 817250.0 False True 630290.2188429117 807925.0688314696 942407.699410078 759069.2129168065 792545.4298739992 1033305.5475530936 668817.1534359743 574769.6706637358 739516.9775502802 765092.4053170729 0.8238092738375884 1.0559836474871893 1.231756703975543 0.9921274968116168 1.035881972381557 1.3505630697312525 0.8741651972859411 0.7512421593383054 0.9665721060762672 1.0 19.545274476675875 2.0492926962401086 24.999903189909826 0.8618981542640186 1.083785442569449 0.26144453870148276 0.14642259779604322 121.30826546000932 61523.65278905195 0.0543632609046912 0.04014991962745366 112.01925918756946 -2.0492926962401086 0.22188728830543047 DIVNGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DIVNGLR 7 0 P47756-2;B1AK88;B1AK87;P47756 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ;;; 118.01 0.01187 918590000.0 695520.0 880800.0 832080.0 817330.0 778520.0 861560.0 820040.0 733400.0 964400.0 808560.0 False True 691775.3975995373 910116.8955451569 949229.631430988 920803.8941972667 877659.9073504393 802002.385094089 780371.5323429874 788130.0321297409 726736.5422979249 756957.0085569574 0.9138899432588905 1.202336308742526 1.2540073223452597 1.2164546781232168 1.159458063574293 1.0595085005197389 1.0309324354241292 1.041182026482866 0.9600763769706764 1.0 19.5298518389768 2.587834956764403 2.5709890038234824 1.015342902028744 1.1624950092879651 0.3567527293669398 0.08885631609483602 0.32253383692569587 4.183764073825988 0.03287490789037656 0.02986510986966496 387.1105048717516 -2.587834956764403 0.147152107259221 DIVNMLMHHDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DIVNMLMHHDR 11 0 P11216;H0Y4Z6;P11217;P11217-2 P11216 PYGB;PYGM Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, muscle form 0 ;;;;; 137.59 4.3522e-05 3080567000.0 3046784.0 3654134.0 3660723.0 3204581.0 2869770.0 3177562.0 3353156.0 2111967.0 4010460.0 2936519.0 False True 3030380.453473522 3775759.6412193524 4176120.978825282 3610280.626026906 3235218.199040574 2957904.6181163755 3190951.033980151 2269572.701891125 3022135.8704107585 2749107.843339598 1.1023141419553173 1.3734490810780944 1.5190822684322773 1.3132553656538848 1.1768247676709738 1.0759507399037256 1.1607223927977321 0.8255669952671131 1.0993151388122657 1.0 21.3905320720279 2.764479600313739 1.2953871330489208 0.9843405586004644 1.345021152384654 0.5512198351843323 0.12525274017012014 0.3056474504935807 1.0531094764295987 0.057461142127801804 0.05553194972453876 581.4061218508417 -2.764479600313739 0.3606805937841896 DIVPGDIVEIAVGDKVPADIR ddPTM_BT-474_Trastuzumab_2h_R1 3 DIVPGDIVEIAVGDKVPADIR 21 1 P16615-5;P16615-2;P16615-3;P16615 P16615-5 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 0 ;; 157.98 4.607e-10 503349000.0 273854.0 361664.0 342953.0 254347.0 355000.0 450952.0 353332.0 277952.0 440267.0 340868.0 False True 272379.60049204 373701.7676094954 391237.8013990856 286547.3041212148 400207.14575014863 419778.7496668252 336239.9813006834 298694.1896516572 331769.0971255501 319113.51240822277 0.8535508209492587 1.1710621865846944 1.2260145251969103 0.8979478868154351 1.2541215905586212 1.3154527569168788 1.0536688928125104 0.9360123530888145 1.039658567328662 1.0 18.28371017321887 2.0019739676355512 24.999343423321058 0.9872955617506973 1.1280298781515632 0.14272529395270572 0.14010316064356831 110.10753358633453 1394441.3606325046 0.05295859630429149 0.03884899603118341 100.45555736703675 -2.0019739676355512 0.14073431640086587 DIVPGDIVEVAVGDKVPADLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DIVPGDIVEVAVGDKVPADLR 21 1 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 Q93084-4 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 0 ;; 153.36 4.0075e-08 436280000.0 435480.0 622500.0 593634.0 454587.0 661320.0 871470.0 603172.0 530689.0 761220.0 636760.0 False True 433135.424066377 643219.5361908043 677212.5072407731 512137.6675901448 745535.1820492625 811227.33011972 573994.2660191997 570291.7079641387 573627.530825411 596121.4316423361 0.7265892502355993 1.0790075680029005 1.1360311360976036 0.8591163484580432 1.2506431449634114 1.3608424174329035 0.9628814458789459 0.956670365621589 0.9622662437165636 1.0 19.185246716170827 4.740265541923709 24.11579600640981 1.0630884524140238 0.7265890629534671 0.3303581282404545 0.1437095639470799 116.04880794227458 1641247.586858348 0.03616528771157437 0.23185451688695852 54987.69839580226 -4.740265541923709 -0.3364993894605567 DIVTESNKFDLVSFIPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIVTESNKFDLVSFIPLLR 19 1 Q08AM6 Q08AM6 VAC14 Protein VAC14 homolog 0 ; 193.22 5.2659e-15 108320000.0 296230.0 347350.0 298150.0 303380.0 306910.0 367200.0 363190.0 313010.0 436920.0 375590.0 False True 294635.1305942469 358911.3347724907 340126.92843374284 341787.87689374806 345993.16930191015 341816.3282958235 345621.1121794665 336368.3956325743 329246.9204280476 351619.52464122337 0.83793734405073 1.0207377850780828 0.9673152501437255 0.9720389595614547 0.9839987402717352 0.9721198748692849 0.98294061608815 0.9566260462236542 0.9363726908054842 1.0 18.423655656752594 4.750817885942419 24.86587278459783 0.9746440805329053 0.8379372533578592 0.7838522031144393 0.02186347465409738 799.3742312152689 1621629.7824296895 0.005065594351803696 0.08703340603167271 56340.13534406202 -4.750817885942419 -0.13670682717504612 DIWAELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIWAELR 7 0 A0A1B0GV75;A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786 A0A1B0GV75 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial 0 86.794 0.075003 0.0 71840.0 86661.0 87040.0 77204.0 100300.0 148180.0 78812.0 61567.0 99618.0 94652.0 False True 71453.22142217438 89545.45899731932 99294.47543475758 86978.01848409558 113072.61047532361 137936.66537820024 74999.56246892294 66161.44217089131 75068.47871281068 88611.22832434581 0.8063675763598765 1.01054302813131 1.1205631307954296 0.9815688161519198 1.276052850339025 1.5566499639674032 0.8463889270826971 0.746648516469256 0.8471666642294555 1.0 16.43520190024262 2.0459322616494076 24.99996945152413 0.8264681750595629 1.1269586363075996 0.3016736817756639 0.19526570244847397 143.32470407629097 78008.01192245576 0.07693114159823694 0.05681739050212287 111.15583403194745 -2.0459322616494076 0.3004904612480367 DIWDFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIWDFLR 7 0 Q8NFF5-2;Q8NFF5;Q8NFF5-3;Q5T190 Q8NFF5-2 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region 0 ; 119.89 0.01089 132296000.0 351670.0 410540.0 407300.0 359480.0 308980.0 363840.0 408870.0 317140.0 511850.0 397380.0 False True 349776.6477942098 424204.57572332886 464644.29968493566 404990.13114168524 348326.77153205854 338688.59718723467 389091.39606492047 340806.5972042896 385711.4259386069 372018.8681858653 0.9402121174656578 1.1402770450647974 1.2489804669068385 1.0886279320094783 0.9363147983075689 0.9104070415536601 1.0458915644851796 0.91610030121918 1.0368060841094238 1.0 18.505016268748246 3.334259263080157 5.447166155958621 0.9687759691225438 1.1210155524474648 0.3700432082333248 0.08276243659743827 0.19948134745052545 9.191036778967273 0.023085219509769824 0.03133294442972751 2159.03291384074 -3.334259263080157 0.15223958332492094 DIWDIQMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DIWDIQMR 8 0 P32456 P32456 GBP2 Interferon-induced guanylate-binding protein 2 0 ; 96.253 0.021106 198031000.0 265970.0 301850.0 280800.0 278570.0 257890.0 313440.0 301730.0 263230.0 304790.0 321430.0 False True 264538.04707204504 311896.89477782144 320334.1992426462 313836.9334375748 290730.76286621357 291772.63055839576 287134.1671794665 282873.5592548564 229678.58847675676 300916.06220993225 0.879109094839516 1.0364913474117858 1.064530078222169 1.0429384564345001 0.9661523573420518 0.9696146773143747 0.9542002014473695 0.9400414094795357 0.7632646352939542 1.0 18.199001590919117 1.9664739121140087 1.3830594453174767 0.8884673813103212 1.0036774544406424 0.2439432826930107 0.07328727113885743 0.5479314414751982 1.9470455750094777 0.0511188329674317 0.02347237379024679 92.57077765757244 -1.9664739121140087 0.11521007313032117 DIWPTRDEIQAVER ddPTM_BT-474_Trastuzumab_2h_R1 3 DIWPTRDEIQAVER 14 1 P21399 P21399 ACO1 Cytoplasmic aconitate hydratase 0 ;; 159.18 2.5265000000000003e-07 240130000.0 109707.0 129084.0 104777.0 114984.0 106266.0 121845.0 125476.0 105143.0 137766.0 127487.0 False True 109116.34970159357 133380.4829070743 119528.6908619899 129540.96261042502 119798.34521207133 113422.14194227845 119406.24651513176 112989.30456533593 103815.41526982143 119350.67051288809 0.9142499931729385 1.117551182024329 1.0014915739336596 1.0853811047206186 1.0037509190125153 0.9503268096849993 1.0004656530374303 0.9467002077138291 0.8698352076590212 1.0 16.864847145949934 2.889941667152066 3.847013479663814 0.9539764835489305 1.0349922911391045 0.2603189156064678 0.06051793508100766 0.3004457518718665 7.893651268576288 0.017948036636683942 0.019369791518104727 776.1428609541045 -2.889941667152066 0.08101580759017402 DIYLS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DIYLSPDR 8 0 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 DIYLS(1)PDR;DIYLS(1)PDR;DIYLS(1)PDR;DIYLS(1)PDR 113.69 0.0029379 1927590000.0 1670370.0 1895000.0 1790600.0 2056640.0 1870170.0 1862060.0 1917630.0 1729820.0 2117910.0 2021810.0 True False 1661376.9135155552 1958073.9294483121 2042700.9158257912 2317010.413127952 2108325.064133958 1733340.175017757 1824866.9108420121 1858907.95224798 1595979.4590400206 1892776.3548413732 0.877746020688635 1.0344983042713525 1.0792088091130991 1.2241332195435906 1.11387965025094 0.9157659702289668 0.9641217813051917 0.9821064953042318 0.8431949474420468 1.0 20.85207252562605 2.735675742891188 24.876294521752772 0.9453898026575693 1.0736799092449307 0.32474037592466876 0.08956043488856016 302.29579118410726 2606691.012385502 0.0300086484978294 0.029472195867732132 544.0962627829716 -2.735675742891188 0.1282901065873614 DIYLS(ph)PDRTGSSFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DIYLSPDRTGSSFGK 15 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 DIY(0.167)LS(0.833)PDRTGSSFGK 72.359 0.024817 435280000.0 389690.0 435290.0 393500.0 446290.0 384630.0 459060.0 483360.0 423960.0 633400.0 452060.0 True False 387591.95233862946 449778.36451163865 448901.37963668536 502790.2682408551 433610.3506193792 427326.26271100406 459978.030185486 455598.0480252589 477307.05712516117 423209.1437719619 0.9158402129124977 1.0627803560737645 1.0607081303483537 1.1880420724363505 1.0245769898890034 1.009728331723524 1.0868811247455852 1.0765316740669222 1.1278278462299691 1.0 18.69101127280547 4.7490748998548185 3.700998582996591 1.075061383932895 0.8969045727201678 0.4322594009366516 0.05324851730521776 0.26328885613203845 6.658640320661951 0.012639214486713823 0.13063935345450964 56114.47445560696 -4.7490748998548185 -0.1781568112127273 DIYQDLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DIYQDLNR 8 0 A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;P43246;P43246-2;A0A2R8Y7S8 A0A2R8YFH0 MSH2 DNA mismatch repair protein Msh2 0 110.87 0.0077759 103060000.0 172800.0 216520.0 199450.0 192930.0 161980.0 178840.0 205400.0 147860.0 271390.0 208020.0 False True 171869.66399988488 223726.7373108962 227530.82634952225 217354.9182184416 182607.1928693211 166477.21174407686 195464.01729580192 158894.0640178668 204509.57093968673 194743.98550511803 0.8825415765939945 1.1488248878680594 1.1683586826025112 1.1161059359788512 0.9376782158159233 0.8548516212825567 1.003697324920286 0.8159125613339722 1.0501457614171712 1.0 17.571219247057876 3.220021114902575 10.930117698284356 0.9266129003837406 1.0903401263600347 0.299268900812693 0.0987246261119657 0.4243482649383994 244.76894796066375 0.027622162614477093 0.033584393798161236 1659.667596622413 -3.220021114902575 0.1637272259762942 DIYQFLCNASER ddPTM_BT-474_Trastuzumab_2h_R1 1 DIYQFLCNASER 12 0 O75509 O75509 TNFRSF21 Tumor necrosis factor receptor superfamily member 21 0 73.233 0.092476 111700000.0 27640.0 32610.0 26772.0 32505.0 33630.0 28937.0 30339.0 26387.0 25671.0 33250.0 False True 27491.189311092683 33695.40413683873 30541.264893604457 36620.129667187255 37912.58115937323 26936.653300371032 28871.38666376504 28356.131930471027 19344.726023776468 31127.956533242803 0.8831671710198429 1.0824804416844405 0.9811522597375837 1.1764386020032873 1.2179592039356921 0.8653524452080332 0.9275066493019585 0.9109538526947109 0.621458270256753 1.0 14.925923250409799 2.7060894502886224 24.060156364680104 0.8691365034456294 1.0702035728335038 0.39215167114748284 0.1264203056564418 442.0289718310061 327529.51003282476 0.0409343728154812 0.038596872603040656 508.2641173656353 -2.7060894502886224 0.20106706938787433 DKADFCIIHYAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKADFCIIHYAGK 13 1 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ; 131.35 7.8973e-05 7170400000.0 18674400.0 17127300.0 15361000.0 14396400.0 15018900.0 20067300.0 19751500.0 18501800.0 27514000.0 22182000.0 False True 18573859.10532089 17697371.826828506 17523695.279794503 16218982.763903853 16931467.891005367 18680094.784343086 18796044.486942705 19882498.26623675 20733543.36871122 20766325.769034334 0.8944220230339093 0.8522148801699869 0.8438515062652502 0.7810232269441115 0.8153328652992958 0.8995377897903284 0.9051213342213089 0.9574393894891362 0.9984213673286394 1.0 24.307742643817008 1.9249077210838266 1.1817222302693884 1.0000608251895602 0.8375478158928842 0.816474376585427 0.030148638290063878 0.2045037366551864 0.5267453357424009 0.02543823076820935 0.011205392216014857 84.1216380949939 -1.9249077210838266 -0.162513009296676 DKADKDEQIR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKADKDEQIR 10 2 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;A0A494BZX5;A0A494C122;A0A494C0Y7;H7C0P8 Q92878-2 RAD50 DNA repair protein RAD50 0 ;;; 115.33 0.0006961000000000001 1724980000.0 1276420.0 1048310.0 887700.0 818450.0 914290.0 1257500.0 1298360.0 1191180.0 1956230.0 1226690.0 False True 1269547.8965435924 1083202.3646332219 1012680.4439732799 922065.6860824313 1030719.4120786001 1170571.9848365963 1235553.366583142 1280071.9002894787 1474143.328639019 1148401.5939778541 1.1054912351228194 0.9432261068893208 0.8818173444583434 0.8029122311547511 0.8975252363664663 1.0193054337219682 1.0758896304762255 1.1146552800014344 1.2836479297567456 1.0 20.131195807439543 2.300042109309203 1.8666202441231476 1.1392322985758083 0.9192099202373541 0.46811696048777096 0.09671123363172172 0.2942406980959171 2.081769423797102 0.04739858770135726 0.03224246155635865 199.54557855162915 -2.300042109309203 -0.22002237833845417 DKAFELELSWVGELTNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKAFELELSWVGELTNGR 18 1 P25788-2;P25788;G3V4X5;H0YJ03 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ; 125.28 2.7403e-05 246880000.0 395320.0 416500.0 412020.0 373750.0 378150.0 458930.0 475810.0 423150.0 635220.0 491230.0 False True 393191.64104418136 430362.95072043344 470028.8346579604 421066.7116785489 426305.16102934786 427205.24930501747 452793.2525292876 454727.60171216144 478678.5425119116 459879.28083683836 0.8549888143007746 0.9358172212875207 1.0220700393430489 0.9156027010226193 0.9269936237475279 0.9289508510312441 0.9845915469497639 0.9887977577174113 1.0408786880784549 1.0 18.810895675182945 1.9188647207834832 1.6955854389410228 1.0157542580397898 0.9340178638115029 0.44751611854572826 0.04007214549869943 0.36946925754113846 1.9804816553747093 0.027233927249108787 0.012574597083148484 82.95923159709109 -1.9188647207834832 -0.08173639422828693 DKAIT(ph)PPLPESTVPFSNGVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKAITPPLPESTVPFSNGVLK 21 1 Q92667-2;Q92667;I3NI36 Q92667-2 AKAP1 A-kinase anchor protein 1, mitochondrial 1 DKAIT(1)PPLPESTVPFSNGVLK;DKAIT(0.998)PPLPES(0.002)TVPFSNGVLK 139.15 7.3515e-07 907770000.0 1419170.0 1292660.0 1187300.0 1075310.0 1121000.0 1636230.0 1499170.0 1426040.0 2047660.0 1489650.0 True False 1411529.3464046102 1335685.4066705303 1354461.519803398 1211444.1357459822 1263752.70531244 1523121.2713711208 1426649.419714447 1532458.3460843936 1543041.6302382506 1394579.2616464712 1.0121542641743628 0.9577694458854855 0.9712330858873455 0.8686807333673702 0.9061892285852763 1.0921726095172892 1.0229962964099388 1.0988678723611158 1.1064567448224503 1.0 20.411398502352753 2.7352473725681046 24.99662266793928 1.0690635972842482 0.9414313062640769 0.618998950690627 0.04733288203632758 190.02550405595707 1433633.3396025796 0.015439423428194564 0.015111922260817014 543.5598530617017 -2.7352473725681046 -0.12763229102017126 DKANMQHR ddPTM_BT-474_Trastuzumab_2h_R1 14 DKANMQHR 8 1 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7;H0YBK1;P55795 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;;;;;;;;;; 162.97 0.00020346 4212953000.0 4811361.0 4840529.0 5154215.0 4030857.0 3250694.0 3329870.0 4545136.0 3863748.0 6784821.0 4552092.0 False True 4785457.166968461 5001643.081603431 5879883.670760097 4541163.0829069195 3664650.6125271376 3099683.92457084 4325270.407574354 4152080.495474801 5112792.776493519 4261573.591317968 1.122931955632021 1.173661084204481 1.379744722170018 1.0656071016017543 0.8599289755298531 0.7273566578518726 1.0149467831286907 0.9743068860605303 1.1997429275678178 1.0 22.022954815080418 3.4926023396537893 9.636974871276282 0.9557440597334668 1.2208479765984177 0.45717264521997525 0.1279645473141504 0.2665458904131711 155.2927568048829 0.036035379343304044 0.05306983204899103 3108.868408092807 -3.4926023396537893 0.26510391686495094 DKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKAPVQPQQSPAAAPGGTDEKPSGK 25 2 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK 220.63 6.3304e-34 11513300000.0 9242000.0 5669930.0 5959650.0 5041540.0 5528810.0 8522200.0 8496600.0 8462700.0 11923300.0 8113000.0 True False 9192242.098882722 5858650.192504934 6798716.917793574 5679798.447079256 6232871.181675707 7933080.37310095 8085586.997835984 9094229.646719879 8984962.479034463 7595221.394111255 1.2102665112579434 0.7713600286947891 0.8951308414873556 0.7478120982072927 0.8206306120988377 1.0444830981821867 1.0645623844625411 1.1973620220960035 1.1829757176006357 1.0 22.856660587972687 2.4759135402303794 2.5686348960049523 1.135257973608094 0.8760777937129648 0.3842301152687123 0.13163704681794391 0.2570653703987936 3.4398057833395654 0.048787373403372844 0.04124490115808105 299.1668992934501 -2.4759135402303794 -0.2591801798951293 DKAS(ph)PEPEKDFSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKASPEPEKDFSEK 14 2 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 DKAS(1)PEPEKDFSEK;DKAS(0.998)PEPEKDFS(0.002)EK;DKAS(0.995)PEPEKDFS(0.005)EK;DKAS(0.999)PEPEKDFS(0.001)EK 123.43 8.1062e-05 4107280000.0 8596960.0 4850160.0 4138300.0 3509060.0 4039810.0 7264540.0 7173990.0 6772640.0 12479330.0 6583130.0 True False 8550674.922572056 5011594.643616363 4720936.669251577 3953306.636207969 4554255.857670156 6762359.448687756 6826956.696396838 7278048.78756908 9403966.335954739 6162989.007298846 1.387423361042096 0.8131759829006863 0.7660141310751257 0.6414593035175069 0.7389686809884843 1.0972532063060756 1.107734686580108 1.1809284064842018 1.525877512489085 1.0 22.555198787149894 2.4180915256864797 2.217368138627732 1.2235186684126134 0.8506762705608752 0.3228140764583647 0.22687429332677106 0.3520827210289778 3.5358208162672136 0.09412641237185007 0.07453365864448853 261.8734837126595 -2.4180915256864797 -0.3728423978517381 DKASDASDKQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKASDASDKQR 11 2 Q9Y2H0-3;Q9Y2H0;Q9Y2H0-1;A0A0B4J2C2 Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 0 72.652 0.025708 36590000.0 37834.0 38455.0 33658.0 39261.0 39817.0 46190.0 57532.0 46895.0 89650.0 70904.0 False True 37630.305947752546 39734.95142846159 38396.753839419514 44231.438574479 44887.45893615116 42996.994019564496 54748.9573664172 50394.54302798496 67556.95874845384 66378.84601603154 0.5669020811037334 0.5986086503954131 0.5784486495915595 0.6663484111157402 0.6762313843978265 0.6477514539674287 0.8247952571093878 0.7591958289816289 1.0177483159640612 1.0 16.018435928197057 1.7206166965827097 0.6369345286817197 1.0243260957125837 0.5901505220932903 0.8794204558044955 0.054457557945092404 0.21674443153884024 0.18444054764474924 0.04882585830009882 0.02592783421219937 52.55532142908088 -1.7206166965827097 -0.4341755736192934 DKASGDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKASGDVK 8 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 0 ; 93.096 0.010316 222540000.0 336130.0 250600.0 252990.0 241113.0 237140.0 194863.0 263860.0 292920.0 487030.0 339330.0 False True 334320.31342755374 258941.06950910072 288608.7929714995 271637.8810781273 267338.3733610992 181392.57946816206 251096.08375691474 314779.17781762104 367007.98236764636 317673.66888497095 1.0524017133714991 0.81511656417096 0.9085071292956427 0.8550846597754593 0.8415503063236316 0.5710028788500062 0.7904214555718692 0.9908884766008165 1.1552987178819005 1.0 18.27718598833656 1.579396338899933 4.11112655275832 1.0767897756131515 0.8274095360732096 0.42260730721925954 0.11761534940142807 0.16257344829798276 6.206264328780104 0.07307263070885382 0.031752866268914735 37.96613073660197 -1.579396338899933 -0.24938023953994193 DKAVESLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKAVESLR 8 1 P30153;C9J9C1;P30154-4;P30154;P30154-2;P30154-3;E9PNM7 P30153 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 ;;; 119.68 0.0015025 5138830000.0 3390040.0 3621190.0 3421330.0 3190480.0 3107260.0 3677420.0 3825470.0 3419640.0 4857580.0 3667340.0 False True 3371788.401308853 3741719.1200944227 3903023.52526654 3594394.440872714 3502951.1428270615 3423208.6111155427 3640417.401385452 3674830.9013800747 3660494.4972371957 3433287.221432265 0.982087481717374 1.0898357401433747 1.1368182367329918 1.0469250630808686 1.0202907350599508 0.9970644430055817 1.0603299888981554 1.0703534730330675 1.0661777652584938 1.0 21.711159124435454 -1.837074384633325 2.1965540895110465 0.9760646450258219 1.0546378261408231 0.1163834685659596 0.04268784779161059 4837683.758127013 2607928.1493424536 609594.8191475614 0.01141672339685694 0.014552098153402391 1.837074384633325 0.07857318111500122 DKDAVDK ddPTM_BT-474_Trastuzumab_2h_R1 5 DKDAVDK 7 1 P25815 P25815 S100P Protein S100-P 0 ;;;; 99.136 0.0098044 3488690000.0 7470200.0 5177670.0 4218460.0 3866240.0 4240120.0 3284810.0 4664880.0 5250560.0 7239140.0 5061050.0 False True 7429981.27321725 5350005.615982385 4812382.500488375 4355705.58758548 4780074.14883977 3057738.8163110125 4439221.932827854 5642383.449003453 5455150.946506216 4738049.456017099 1.5681519034761284 1.129157824468913 1.0156885328364136 0.9193035294416227 1.008869618861682 0.6453581467850296 0.9369302650883585 1.1908663050863457 1.1513495156911948 1.0 22.175861826909966 4.782766403385675 1.971735643712966 0.9841049952480077 1.7866178559451809 0.6158835980855015 0.1390556506969211 0.6438051428686259 2.434601403899003 0.03965069947099074 0.972796935451992 60641.00683807042 -4.782766403385675 0.8025128606971732 DKDAYSSFGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKDAYSSFGSR 11 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;O15523-2;O15523;O15523-3;C9J8G5;C9J081 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;;; 184.34 4.5131e-06 7730990000.0 5908900.0 5828310.0 5234870.0 5038360.0 4886410.0 6255310.0 6216810.0 5947340.0 8347980.0 6315920.0 False True 5877087.138940508 6022301.775062205 5971894.1936942795 5676215.859405305 5508665.349478831 5822895.143115865 5916079.1497795265 6391160.7107806 6290732.186200987 5912832.578268836 0.9939545997869613 1.0185138333183483 1.0099887176989435 0.9599825099507878 0.9316457512638827 0.9847894500711023 1.0005490721186021 1.0808966136247018 1.0639117720533857 1.0 22.49541799712505 1.9013012885508822 5.116579897337535 1.0551841505715396 0.9832787999940682 0.47827212941425323 0.030145213254483345 0.1845632950521217 7.31895947221844 0.014576254022548385 0.008642355042681734 79.67118716477141 -1.9013012885508822 -0.07190535057747138 DKDDDEVFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKDDDEVFEK 10 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 138.89 4.7979e-05 4350600000.0 12974900.0 7677100.0 6195400.0 5697600.0 5835400.0 9686000.0 9414000.0 9065100.0 15714700.0 8682200.0 False True 12905044.580046901 7932627.6325950455 7067658.468617856 6418915.5758119095 6578503.600874405 9016429.618391467 8958608.85502766 9741583.793645084 11842022.75119161 8128094.562794608 1.5877084697215775 0.9759516909295951 0.8695344787164788 0.7897195986367748 0.8093537236865732 1.1092919193710058 1.1021782271129859 1.1985076844745424 1.4569248253332423 1.0 22.95448575594228 2.0456587739070646 1.8922312319349788 1.2388712033955522 0.9898314652387425 0.11475743991028242 0.23677214359590465 0.6523780853982021 4.40951500700627 0.13913316617766225 0.07400525683578903 111.08585803738316 -2.0456587739070646 -0.2490397381568097 DKDDDEVFEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKDDDEVFEKK 11 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 86.803 0.0079855 1014800000.0 1467700.0 851990.0 790140.0 745620.0 741060.0 1232100.0 1235900.0 1202300.0 2533900.0 1300200.0 False True 1459798.0662767992 880347.9721111692 901384.8439800016 840015.4155498582 835429.5983932537 1146927.8270514281 1176114.7954035145 1292021.7311556938 1909454.2975204387 1217220.1228427768 1.199288476161148 0.7232446749690155 0.7405273927569054 0.6901097014301985 0.6863422504404018 0.9422517797132836 0.9662301611123039 1.0614528193456252 1.5687008961542406 1.0 20.215158658836078 1.755552678398071 1.733158603718427 1.2731074237244822 0.8095897981831152 0.43396198103897976 0.19790299033996933 0.29484922392956014 1.7446957694924372 0.14032311610661813 0.05694611516346269 56.957730766860145 -1.755552678398071 -0.463517625541367 DKDDDGGEDDDANCNLICGDEYGPETR ddPTM_BT-474_Trastuzumab_2h_R1 5 DKDDDGGEDDDANCNLICGDEYGPETR 27 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;; 323.61 8.775499999999997e-83 7965980000.0 4770560.0 3492190.0 2802440.0 2705760.0 2597060.0 4242410.0 3732200.0 3581840.0 6568040.0 3793850.0 False True 4744875.835019046 3608425.4330765633 3196999.1927548484 3048308.9385721735 2927780.1970193847 3949142.1822589412 3551659.227611451 3849135.0890149795 4949434.549226941 3551723.2449215986 1.3359362506083399 1.01596469776637 0.9001262126282081 0.8582619557790073 0.8243266704987914 1.1118946803936902 0.9999819757042615 1.0837373363813279 1.3935304661769037 1.0 21.76008773864319 1.4991019359144693 4.686124958894035 1.2100314488234227 0.9964169525040308 0.1708915046950904 0.1631390778809388 0.25431856370505534 12.144398510378167 0.10125460663365979 0.04195902490283728 31.557452407232642 -1.4991019359144693 -0.2136144963193919 DKDDELSFMEGAIIYVIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKDDELSFMEGAIIYVIK 18 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 0 ; 140.95 1.1255e-07 216610000.0 652320.0 517800.0 507280.0 450690.0 463120.0 753900.0 686900.0 628660.0 1002860.0 663040.0 False True 648807.9815995647 535034.6599832898 578700.6146431962 507747.3077897127 522095.58687270136 701784.6674897086 653672.0227871783 675573.8014707965 755718.5906355218 620724.2195428968 1.0452435416123262 0.8619522859560578 0.9322990732814536 0.8179917776748252 0.8411071623033721 1.1305901161815548 1.0530796160467917 1.088363850162462 1.217478820452721 1.0 19.24359291282044 2.7348785183075943 24.99937063973926 1.098281464447814 0.8948902565554476 0.616729527866178 0.07806991613342484 207.08257097562273 1405969.16418638 0.0242845199448389 0.023716001960271113 543.0983937102151 -2.7348785183075943 -0.20339120789236642 DKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKDDQEWESPSPPKPTVFISGVIAR 25 2 P51397 P51397 DAP Death-associated protein 1 1 DKDDQEWES(0.019)PS(0.98)PPKPT(0.001)VFISGVIAR;DKDDQEWES(0.187)PS(0.813)PPKPTVFISGVIAR;DKDDQEWES(0.011)PS(0.865)PPKPT(0.089)VFIS(0.035)GVIAR;DKDDQEWES(0.026)PS(0.973)PPKPT(0.001)VFISGVIAR 260.53 3.761e-45 26218520000.0 4099210.0 2673960.0 2212380.0 2147370.0 2113970.0 3785890.0 3513710.0 3208240.0 5729390.0 3282800.0 True False 4077140.3088250444 2762961.1421570424 2523863.8736483157 2419226.821825193 2383171.5490181423 3524180.335326456 3343738.4236243065 3447655.15991262 4317458.604392679 3073288.893453522 1.3266375046972796 0.8990242173596126 0.8212257165359402 0.7871784611522982 0.775446640924186 1.1467130027487449 1.088000034994066 1.121812911001157 1.4048333085735576 1.0 21.551351957980703 2.7141851453036567 22.577356721895278 1.1511451325264193 0.9075536966755958 0.29999279733740536 0.17526233565773386 284.5280133898076 263537.8678153906 0.05738704068846191 0.05414489363849158 517.8275414190953 -2.7141851453036567 -0.24359143585082343 DKDDQEWESPSPPKPTVFISGVIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKDDQEWESPSPPKPTVFISGVIAR 25 2 P51397 P51397 DAP Death-associated protein 1 0 131.57 4.4681e-05 355740000.0 197500.0 163070.0 150070.0 128640.0 117010.0 191140.0 180030.0 173820.0 243650.0 189990.0 False True 196436.68194431264 168497.68637210323 171198.55156817625 144925.81081024354 131910.52992739395 177926.94169516242 171321.26111861385 186791.33104007575 183605.7222427306 177864.6755413777 1.104416497240985 0.9473364278726869 0.962521372201021 0.8148094070344428 0.7416342200939546 1.0003500759979191 0.9632112761972141 1.0501879053360508 1.03227761040172 1.0 17.440420489923355 2.511601299566254 24.9298690301242 1.01297928011781 0.9089402591904013 0.2119764317711751 0.09154797234174955 949.4629052959564 686482.5457778539 0.03170930968327987 0.029881159813868664 324.788990648279 -2.511601299566254 -0.10403902092740858 DKDEKYS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKDEKYSPK 9 2 Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3 Q4LE39-2 ARID4B AT-rich interactive domain-containing protein 4B 1 DKDEKY(0.001)S(0.999)PK;DKDEKY(0.007)S(0.993)PK 47.039 0.095762 429630000.0 891640.0 624190.0 566790.0 615940.0 599280.0 874100.0 971620.0 773640.0 1663150.0 991430.0 True False 886839.5093105172 644965.7868191777 646589.1053730043 693917.9408462486 675594.7557891518 813675.5244100745 924619.028651154 831372.9452643198 1253288.9675682217 928156.0885940734 0.9554853113702668 0.6948893561600625 0.6966383276679536 0.7476306511088695 0.7278891601223135 0.8766580690566728 0.9961891539727147 0.8957253585694233 1.3502997857468608 1.0 19.82400791912643 1.9586411064871336 1.1061397115196536 1.1235313966734302 0.7571782927074296 0.5626711599590324 0.1257504643876398 0.3586658203992743 0.8077622244481358 0.09562507495842906 0.043280474856077195 90.91616465145476 -1.9586411064871336 -0.3663531039660005 DKDFAIDIIK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKDFAIDIIK 10 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ;; 127.37 0.00032632 4624630000.0 14523180.0 12909050.0 11270190.0 10501980.0 10010030.0 14430480.0 14281780.0 13428500.0 22975680.0 14356640.0 False True 14444988.81255697 13338719.92556449 12856934.789752414 11831529.59120772 11284747.986403838 13432934.883296048 13590915.739702247 14430602.85854133 17313631.52233885 13440386.943862103 1.0747450109056307 0.9924357074895048 0.9565896311953923 0.8802967980479827 0.8396148141819166 0.9994455471708381 1.0111997367686565 1.073674658238276 1.2881795438371335 1.0 23.680071337592725 1.7442975667018865 2.1372650564011786 1.1476096958639876 0.9523534199851458 0.4021104660230891 0.08978568775371394 0.271130074567006 2.5257324688700327 0.06049246465896474 0.025721948926346074 55.50058575459554 -1.7442975667018865 -0.19525627587884187 DKDGLMYWYQLDQDHNVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKDGLMYWYQLDQDHNVR 18 1 Q96T23-2;Q96T23;H0YER1;H7C306 Q96T23-2 RSF1 Remodeling and spacing factor 1 0 106.73 0.00026464 173520000.0 83398.0 76597.0 72339.0 77890.0 77553.0 98905.0 96231.0 73410.0 97427.0 92285.0 False True 82948.99443438895 79146.48484113562 82523.70241814022 87750.86601375844 87428.91485735566 92067.9301473269 91575.93889188083 78888.22696842682 73417.42130491475 86395.2922908364 0.960110119833312 0.9160971939848437 0.9551874903129783 1.0156903656087963 1.0119638760297232 1.0656591083388485 1.0599644548177993 0.9131079353590448 0.849784975062835 1.0 16.39866508113143 -2.749245644980277 2.24167441741874 2.222049972131776 0.9744447587439395 0.015279574595199463 0.06482714836998638 9686283.181318913 2309646.2402528957 58297990.31273803 0.017508569846933403 0.0017813709061564734 2.749245644980277 -1.2476052133878366 DKDGQVDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKDGQVDAR 9 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 0 ; 97.456 0.0060909 555700000.0 1941340.0 1670940.0 1607090.0 1583200.0 1548330.0 1631620.0 2071500.0 1867060.0 2712800.0 2107790.0 False True 1930888.0411431491 1726556.2277954416 1833354.3029233078 1783632.957670849 1745500.6478290893 1518829.9498203471 1971293.6311015303 2006389.4979385792 2044266.7896576226 1973269.037630193 0.9785224438843162 0.8749725429579323 0.9290949525692065 0.9038975039171099 0.8845730686198557 0.7697024180972268 0.998998916776683 1.016784563927564 1.0359797628572203 1.0 20.912156237394782 2.0315563260181317 24.998727344602575 1.0165627775030623 0.8909802794208601 0.5937514022785644 0.04994019151888202 130.5894871677753 103451.65998065152 0.01865268132602979 0.013775800024146677 107.53660614337268 -2.0315563260181317 -0.12558249808220223 DKDGTQVDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKDGTQVDFR 10 1 P78332;E9PGM9;P78332-3;F8WCA5 P78332 RBM6 RNA-binding protein 6 0 70.977 0.047757 181930000.0 356300.0 386030.0 339520.0 297200.0 319310.0 424500.0 414380.0 385290.0 505070.0 413450.0 False True 354381.72038865153 398878.7751899376 387321.4648392569 334825.48952739785 359972.23580135213 395155.31416551536 394334.85631467635 414042.29626297747 380602.2660912619 387063.26702764636 0.9155653625052969 1.0305260384252566 1.0006670687549177 0.8650407260255017 0.9300087775460253 1.0209062647561724 1.0187865651599293 1.0697018589299616 0.9833076360203331 1.0 18.562209874312952 2.6944958855324144 7.896597504469911 1.026884753673785 0.9512308869274388 0.3470617441247408 0.04736733081233372 0.3462905320027081 56.655120028149035 0.01622797289793926 0.015366642414831936 494.87542249200794 -2.6944958855324144 -0.07565386674634622 DKDNFWMTR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKDNFWMTR 9 1 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ;;; 150.04 7.8601e-05 7878630000.0 8191540.0 8608140.0 8352650.0 7440250.0 6624500.0 8313750.0 8171740.0 7093080.0 10624840.0 8043500.0 False True 8147437.65880565 8894656.736169491 9528630.517464707 8382184.887133983 7468090.808512272 7739040.03096242 7776441.717121703 7622401.647530435 8006490.547561881 7530156.943613198 1.0819744820479482 1.1812046950380777 1.2653960055303417 1.113148763020596 0.9917576571689428 1.0277395396820233 1.0327064595535946 1.0122500373641583 1.0632567963079034 1.0 22.844248503200514 3.434182656323841 4.968433835293383 1.0232058517366749 1.179005770723797 0.7070832669425917 0.045167641686680485 0.0993630004052109 5.65589681622672 0.012566406434179195 0.01752524441462433 2717.5819938496966 -3.434182656323841 0.1557999189871222 DKDNPNQYHYVA ddPTM_BT-474_Trastuzumab_2h_R1 2 DKDNPNQYHYVA 12 1 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 ; 102.4 0.0021507 1031530000.0 1386690.0 1408020.0 1258730.0 1185210.0 1051710.0 1419120.0 1419540.0 1181250.0 2015390.0 1509050.0 False True 1379224.2151157432 1454885.0945339378 1435948.2429227072 1335257.4644776816 1185639.0345264485 1321019.5746491523 1350871.4270305887 1269400.8732659605 1518724.1393424028 1412741.1370372954 0.9762752559242087 1.02983133738501 1.0164270051157993 0.9451536657861416 0.8392471935891171 0.9350754642987921 0.9562059117663583 0.8985374885650047 1.0750194069717314 1.0 20.430065707659942 3.71357955056448 7.202046945189329 0.9384359218442891 1.0097983512591462 0.14445117618441938 0.059840303670877976 0.2860123494999731 63.780424416454885 0.015593247200078831 0.024877124574034504 5171.059685997013 -3.71357955056448 0.07136242941485704 DKDPILR ddPTM_BT-474_Trastuzumab_2h_R1 3 DKDPILR 7 1 A0A087WW66;Q99460-2;Q99460;H7C378 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;; 81.548 0.024536 2495430000.0 3064260.0 3660840.0 2682520.0 3146060.0 3324380.0 3849600.0 3666370.0 3451360.0 4686380.0 4090780.0 False True 3047762.3646312943 3782688.846375488 3060195.4991181735 3544350.8734272 3747720.0878559975 3583486.2129836697 3489013.676206478 3708918.0088509666 3531484.44327473 3829702.9181070356 0.7958221381145035 0.9877238332223467 0.7990686391493735 0.9254897701514454 0.9785929008061124 0.9357086671242199 0.9110402949822136 0.9684610237820298 0.9221301283130049 1.0 21.86880105150126 7.999999999999999 0.2215884545382413 0.9763367335751277 0.2856983883633437 0.33705886512081507 0.055888749148086676 61.95516232729081 0.7958410299662876 0.08108667871352081 15.34879507888452 99999999.99999979 -7.999999999999999 -0.690638345211784 DKDPPIPVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKDPPIPVAK 10 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;; 70.942 0.047855 2599850000.0 6884700.0 6384600.0 5831700.0 4892500.0 5307200.0 7209600.0 7309300.0 6938700.0 10246400.0 6884200.0 False True 6847633.540162077 6597107.551427797 6652752.669954913 5511889.99836067 5983040.461761093 6711217.321572904 6955721.234762449 7456501.0280046705 7721312.014725679 6444844.462139855 1.062497874136203 1.0236255646171772 1.032259616044485 0.8552401893855139 0.9283452062975882 1.0413311540717316 1.0792690615923677 1.156971447768488 1.1980602573241936 1.0 22.619714110780425 2.260445091036496 2.3968821739306625 1.1313637920066695 0.9798052408165914 0.3980449093078069 0.07327489459813193 0.2722900461465035 3.203816782442286 0.03305482517514448 0.023376118666219057 182.15667531828697 -2.260445091036496 -0.1515585511900781 DKDPVNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKDPVNK 7 1 P62851;E9PQK3;E9PK60 P62851 RPS25 40S ribosomal protein S25 0 ; 101.72 0.0080722 2252700000.0 7762300.0 5946800.0 5378200.0 5017400.0 4923800.0 5617800.0 7578400.0 6960300.0 10742700.0 7388700.0 False True 7720508.639272602 6144735.643083492 6135403.811847583 5652602.325554388 5550816.744350931 5229454.708878748 7211803.839700621 7479712.929687243 8095305.52980497 6917146.840215668 1.1161406310454856 0.8883338441448941 0.8869847573824656 0.8171869784071472 0.8024720123156823 0.7560132565749754 1.042598054702532 1.0813292102172627 1.1703243717105432 1.0 22.721745652232297 2.0911970156047786 6.6448415731431005 1.0853484355655354 0.8730216703553979 0.49190209572725097 0.0979689178886582 0.17826347936582135 10.850570426560092 0.03816083229576373 0.028052038241677808 123.36643522129572 -2.0911970156047786 -0.2123267652101375 DKDQPPS(ph)PSPPPQSEALSSTSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DKDQPPSPSPPPQSEALSSTSR 22 1 H3BU99;H3BPL8;H3BR21;H3BUX9;Q7L1V2 H3BU99 MON1B Vacuolar fusion protein MON1 homolog B 1 DKDQPPS(0.995)PS(0.005)PPPQSEALSSTSR;DKDQPPS(0.969)PS(0.031)PPPQSEALSSTSR;DKDQPPS(0.996)PS(0.004)PPPQSEALSSTSR 169.57 7.1062e-18 281320000.0 486930.0 384060.0 368340.0 306660.0 347709.0 440550.0 399800.0 406440.0 529720.0 400980.0 True False 484308.42298300867 396843.2049308277 420199.0703313266 345483.1245574418 391987.680117291 410095.81544315105 380460.1466156851 436770.6166605016 399177.6038843391 375389.11310375074 1.29015042279384 1.0571516090322721 1.1193693574570747 0.9203333620971489 1.0442169643021926 1.092455271418082 1.0135087388923099 1.1635143412904094 1.0633702202599937 1.0 18.518027284704203 4.738953842754607 23.655603164575993 1.0596230376581606 1.2901505538723037 0.5523795313740555 0.06386041600568097 11.963911886901183 719146.5132046014 0.015468355796741978 0.09097358540713146 54821.86966013349 -4.738953842754607 0.23052751621414314 DKDQPPSPS(ph)PPPQSEALSSTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKDQPPSPSPPPQSEALSSTSR 22 1 H3BU99;H3BPL8;H3BR21;H3BUX9;Q7L1V2 H3BU99 MON1B Vacuolar fusion protein MON1 homolog B 1 DKDQPPS(0.01)PS(0.99)PPPQSEALSSTSR 188.15 1.5686e-17 906090000.0 428180.0 370670.0 350540.0 286490.0 322270.0 444340.0 423210.0 410210.0 514810.0 435250.0 True False 425874.72645527066 383007.5268752534 399892.9850517002 322759.6046255184 363309.1742560571 413623.82166385103 402737.7154808007 440821.9532041734 387941.9736005749 407471.9723637273 1.0451632390438779 0.9399604214578081 0.9813999788302943 0.7921025899111634 0.8916175808326552 1.0150976011047756 0.988381392576615 1.0818460731102175 0.9520703260892774 1.0 18.63634130255971 2.7228034454448506 22.897723097503373 1.016631884057549 0.9257885831541603 0.23908333503673607 0.06788337808362122 357.85319239845364 520016.68090974947 0.022803293241279967 0.021587359171263643 528.2061402397884 -2.7228034454448506 -0.09084330090338866 DKDTDKFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKDTDKFK 8 2 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ;; 103.26 0.0027041 9599880000.0 15804800.0 10961800.0 10108170.0 8988750.0 8882870.0 14788100.0 15383900.0 14051600.0 30547600.0 16436000.0 False True 15719708.712878346 11326656.886451978 11531312.474211339 10126724.828362692 10014050.841604574 13765833.454442991 14639721.984794976 15100201.744579017 23019553.29686862 15387040.408432463 1.0216200318979842 0.7361166660902965 0.749417182780121 0.6581333745515484 0.6508107196570847 0.8946381558144858 0.9514319580763603 0.9813584252566041 1.4960351494400026 1.0 23.875212430076267 1.755050182672406 1.5495253735901096 1.223513132735797 0.7691768533058175 0.5353222194809051 0.16095598879509476 0.2725969198729323 1.2668571642568576 0.11986394806751738 0.047606775671488306 56.89186655257327 -1.755050182672406 -0.45433627942997956 DKDVTLS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKDVTLSPVK 10 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 DKDVT(0.007)LS(0.993)PVK;DKDVT(0.011)LS(0.989)PVK;DKDVTLS(1)PVK;DKDVTLS(1)PVK 106.14 0.0014874 1337190000.0 3703490.0 3091360.0 2900080.0 2797580.0 2188690.0 3296410.0 3420910.0 2876220.0 5741330.0 3283380.0 True False 3683550.8213364175 3194254.048833421 3308386.0560527532 3151753.341157662 2467406.6981180054 3068536.9356144746 3255427.5141547355 3090858.141549225 4326456.151380485 3073831.8773569544 1.198357935081255 1.0391765640676522 1.07630676889768 1.025349943298691 0.8027136149813158 0.9982774133544894 1.0590779340065686 1.0055391006637977 1.407512292149369 1.0 21.551606828583058 -0.5839553602847489 7.868601585428438 0.9999999997349109 1.0522562126881052 0.008816482010470583 0.14711909881463914 0.0 0.0 0.13877978330310967 0.03271070862174283 0.2606421441801405 0.5839553602847489 0.05225621295319427 DKEADEEGGENGPADQGFQPQEEEEREDS(ph)DTEEQVPEALER ddPTM_BT-474_Trastuzumab_2h_R1 1 DKEADEEGGENGPADQGFQPQEEEEREDSDTEEQVPEALER 41 2 Q9NU22 Q9NU22 MDN1 Midasin 1 DKEADEEGGENGPADQGFQPQEEEEREDS(0.777)DT(0.223)EEQVPEALER 82.516 0.00025476 314640000.0 19081.0 17451.0 15086.0 14712.0 21976.0 18669.0 18459.0 21098.0 24084.0 23960.0 True False 18978.270016098395 18031.84598564773 17209.977670137327 16574.537691544654 24774.51333804299 17378.455972098942 17566.06764977221 22672.43989347321 18148.820909065955 22430.852286811958 0.8460788637646425 0.8038859047834492 0.7672458206260757 0.7389169827171267 1.104483816364346 0.7747568282243322 0.7831208295237199 1.0107703266720405 0.8091008169019244 1.0 14.45319681792267 -4.825534892108435 0.03745800575308867 1.7807163459999382 0.38065398457400046 0.1653013800709946 0.10976030649046191 1529.2300470529783 4.411757195852245 140.96313459508562 47.14950139767254 1.4943939748697133e-05 4.825534892108435 -1.4000623614259378 DKEAPCSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKEAPCSR 8 1 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;H7BZT5;H7C1R1;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 0 68.557 0.051252 150550000.0 92724.0 105340.0 106590.0 108290.0 109580.0 98135.0 127460.0 93241.0 107320.0 113580.0 False True 92224.78428660499 108846.17822062531 121596.94550311138 121999.5028967762 123534.36346845442 91351.1584349419 121294.27285551564 100199.11688820447 80872.42401432313 106331.22715926985 0.8673349001085513 1.0236520458622038 1.1435675929985791 1.1473534741966007 1.1617881855479444 0.8591188202700809 1.140721085385699 0.9423301090856376 0.7605707765714689 1.0 16.698205821558748 1.5320104882838517 5.641343207559324 0.8711862472651809 1.052246522869226 0.25783558199092815 0.11772691088701312 0.17351218870757124 11.748679118737225 0.06635154378059296 0.029796952851279413 34.041641071457526 -1.5320104882838517 0.18106027560404503 DKEDPQEMPHS(ph)PLGSMPEIR ddPTM_BT-474_Trastuzumab_2h_R1 8 DKEDPQEMPHSPLGSMPEIR 20 1 Q9HB58;Q9HB58-6;G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7 Q9HB58 SP110 Sp110 nuclear body protein 1 DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(0.995)PLGS(0.005)MPEIR;DKEDPQEMPHS(0.999)PLGS(0.001)MPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(0.993)PLGS(0.007)MPEIR;DKEDPQEMPHS(1)PLGSMPEIR 266.98 5.0168e-37 3847310000.0 2727657.0 2501116.0 2297531.0 2106154.0 2187926.0 2822528.0 2723748.0 2563316.0 3694972.0 2808704.0 True False 2712971.5977831837 2584364.1341034514 2621003.3943025502 2372792.880451163 2466545.4072465873 2627413.2828762345 2591989.903512203 2754603.6561749047 2784395.6606881414 2629450.1060675285 1.0317638625364776 0.9828534597937265 0.9967876508683366 0.902391292755804 0.9380460962369911 0.9992253805513959 0.9857535982641827 1.0475968529764383 1.058926980307811 1.0 21.326329691200065 1.9099692752350717 2.4944174912656063 1.040431897116806 0.9714562401015105 0.34885473012841406 0.03635641232285194 0.30551779971404475 3.4507506274109976 0.021333897892584542 0.010929037440430936 81.27730133769671 -1.9099692752350717 -0.06897565701529551 DKEEIVICDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKEEIVICDR 10 1 Q9NRR5;Q9NRR5-2 Q9NRR5 UBQLN4 Ubiquilin-4 0 ;;; 121.4 0.00047062 1660300000.0 2093840.0 1808680.0 1533160.0 1460450.0 1541900.0 2097480.0 2033190.0 1908180.0 2711670.0 2024940.0 False True 2082566.998087496 1868880.8204298532 1749015.6015343855 1645342.8202566889 1738251.8254426855 1952486.1445368307 1934836.8321599432 2050578.0811417052 2043415.263016396 1895706.5955616455 1.098570318298908 0.9858491945986797 0.9226193576734382 0.867931157758735 0.9169413819165879 1.0299516544955434 1.0206415046979906 1.0816959153608765 1.0779174729890035 1.0 20.854304260414935 2.5793669264360792 4.377704099233088 1.0513040109754763 0.95319116187483 0.318189112814393 0.06085332328996037 0.2714299269806035 8.767947601898125 0.021901750063810427 0.020341055420966547 379.6355957882305 -2.5793669264360792 -0.09811284910064633 DKEIS(ph)PSVTKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKEISPSVTKK 11 2 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 DKEIS(0.98)PS(0.016)VT(0.004)KK;DKEIS(0.846)PS(0.136)VT(0.019)KK 118.21 0.00039187 236150000.0 678870.0 466010.0 422840.0 381500.0 391240.0 667790.0 661350.0 625790.0 1206800.0 703590.0 True False 675215.0393495469 481520.8611410061 482372.1966088346 429797.86088392325 441062.0949388394 621627.2491085735 629357.9738976565 672489.627497233 909400.3102915136 658686.2838262948 1.025093517094719 0.7310321665480288 0.7323246414161604 0.6525076830008308 0.66960874359903 0.9437379589833781 0.9554745397789813 1.0209558692960097 1.3806273678705228 1.0 19.32923198286994 2.0117213024809666 1.331860845936559 1.1628466141094347 0.7603732464936472 0.5624074441651812 0.13970652726647717 0.3135548875804479 1.0348269607775475 0.09821614831795714 0.04649474233051638 102.73568062504664 -2.0117213024809666 -0.40247336761578745 DKELEGLQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKELEGLQVK 10 1 P40222 P40222 TXLNA Alpha-taxilin 0 102.4 0.0026927 186700000.0 307050.0 300550.0 266780.0 269280.0 302340.0 356570.0 356340.0 340630.0 511630.0 399750.0 False True 305396.8769164618 310553.6250636883 304340.30510667077 303370.8203900999 340841.20689042256 331921.1551754948 339102.47284900723 366049.5402840929 385545.64199075836 374237.6127568066 0.8160507295532583 0.8298300717985221 0.8132274649380107 0.8106369056689164 0.9107614928911856 0.8869262304513186 0.9061154231693128 0.9781206586574861 1.0302161750943515 1.0 18.513595038388942 2.2038586119776533 0.701171524419887 1.021854250202971 0.814986262586437 0.8976688318636151 0.024950982175989785 0.20752355294167874 0.19708176001819447 0.021762303840825212 0.01381945310121524 159.90373645355993 -2.2038586119776533 -0.20686798761653402 DKELPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKELPR 6 1 H0Y6J6;Q5W012;Q96I25;Q5W010;Q5W011 H0Y6J6 RBM17 Splicing factor 45 0 ; 79.116 0.062014 869760000.0 1332270.0 1622850.0 1460440.0 1597980.0 1403510.0 1627520.0 1583380.0 1489400.0 1907240.0 1619760.0 False True 1325097.2063491114 1676865.5812164578 1666057.2576279598 1800284.1041554192 1582238.6792444813 1515013.3731699856 1506785.8603010084 1600546.5910199545 1437226.257706651 1516385.5300536961 0.8738524472085861 1.105830640020074 1.098702951596329 1.1872205771388955 1.0434277087756523 0.9990951134414597 0.9936693739405784 1.0555010973781043 0.9477973966526559 1.0 20.53220516424834 2.9990646064395947 24.99970067841301 1.007998421429333 1.077000100980475 0.13339890806501098 0.07806982077006923 69.39037993583388 1854671.66349775 0.02272607316994905 0.026857772132833607 997.8484945447118 -2.9990646064395947 0.06900167955114211 DKELTGALIASLINCYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKELTGALIASLINCYIR 18 1 O75694;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 ; 125.88 2.6228e-05 292290000.0 626600.0 654980.0 618390.0 561440.0 582890.0 695270.0 713800.0 618430.0 958090.0 755130.0 False True 623226.4552218041 676780.6133562293 705453.9368577641 632518.2464342592 657117.5864402927 647207.6213895356 679270.7670191991 664580.3869239101 721981.5572482554 706936.956900682 0.881587034230213 0.9573422449483153 0.9979021891153922 0.8947307680833585 0.929527845483132 0.9155096717916563 0.9608647000111925 0.9400843744787803 1.0212813889565644 1.0 19.431222038803767 1.2455414276737387 23.68276018892104 1.010640711995283 0.9368463202320358 0.47162119207152176 0.03209024816788359 65.04824129974729 220691.2086292097 0.022225628056094595 0.0076999894147593406 17.60116554621379 -1.2455414276737387 -0.07379439176324709 DKENALMPNWLHLPVGYHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKENALMPNWLHLPVGYHGR 20 1 P16930;P16930-2 P16930 FAH Fumarylacetoacetase 0 193.54 4.5058e-18 352590000.0 337580.0 345040.0 316400.0 308000.0 337730.0 420540.0 391310.0 280880.0 515580.0 344390.0 False True 335762.50678866357 356524.447818915 360946.3698018994 346992.76842004823 380737.91361745854 391469.05964467773 372380.84035063494 301840.69187974004 388522.21741804644 322410.7353528869 1.0414123041565686 1.1058082400038254 1.1195234222174217 1.0762444620221956 1.1809095413672595 1.2141936254579262 1.1549889613416702 0.9361992600816086 1.205053600317616 1.0 18.29854025671001 DKENGNNS(ph)PLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKENGNNSPLPK 12 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 DKENGNNS(1)PLPK;DKENGNNS(1)PLPK 136.34 6.762e-05 852250000.0 1391400.0 1085970.0 847110.0 835580.0 902250.0 1297290.0 1327100.0 1163630.0 2051620.0 1216870.0 True False 1383908.8569990739 1122115.854967271 966375.7247878864 941364.3423260533 1017146.1894452712 1207611.3957921804 1262903.102985681 1250465.9793934128 1546025.741299529 1139208.3147851771 1.2147987677390157 0.9849961946414257 0.8482871062700397 0.8263320501690407 0.8928535512287553 1.060044401115438 1.108579604445592 1.0976622652453303 1.357105387341793 1.0 20.119600150635403 2.4155342245221676 2.370858027662909 1.1472737877253019 0.9432678444784738 0.31016937241334386 0.13085397475445584 0.35986764070848265 4.133697592629021 0.05388578876124259 0.04312267979172535 260.33599807474036 -2.4155342245221676 -0.20400594324682808 DKEPEVVFIGDSLVQLMHQCEIWR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKEPEVVFIGDSLVQLMHQCEIWR 24 1 M0R1K3;Q15102;M0R389;M0QZT2;M0QXS6;M0R323 M0R1K3 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 ;;; 250.92 5.5836000000000006e-39 1459438000.0 721671.0 652825.0 603050.0 589612.0 574150.0 802909.0 827246.0 692600.0 1102921.0 820408.0 False True 717785.6035211853 674553.8854839533 687954.1981954343 664256.8187457193 647264.5992463324 747405.7906744854 787228.9505933935 744285.3289515382 831120.8979342285 768048.859053373 0.93455721606808 0.8782694974839842 0.8957167113604516 0.8648627114223197 0.8427388331050862 0.9731227146091587 1.0249724888123135 0.9690598718796047 1.082119826281094 1.0 19.550838564643534 2.5641107479441647 4.498319763463289 1.0107062282490036 0.8831170300254567 0.7741460575835643 0.034740930601994485 0.10761215402763569 3.828953309978622 0.011499518865775446 0.010647375663611122 366.5310305505739 -2.5641107479441647 -0.12758919822354686 DKEQWK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKEQWK 6 1 P00338;P00338-3;P00338-4;P00338-2;P00338-5 P00338 LDHA L-lactate dehydrogenase A chain 0 ; 86.47200000000002 0.048827 3481600000.0 3493300.0 2688400.0 2085600.0 2004810.0 2246100.0 4223500.0 3956500.0 3344700.0 4637300.0 3685400.0 False True 3474492.460942117 2777881.768827879 2379234.351639828 2258618.7404421973 2532127.5213222797 3931539.386049589 3765108.979702243 3594298.4980424666 3494499.551636425 3450194.616770316 1.007042456113547 0.805137703051725 0.6895942449376956 0.6546351702781514 0.7339086059129536 1.139512352995859 1.0912743766398647 1.0417668848509898 1.0128412857207407 1.0 21.718246312296262 2.743909017734423 24.928516444113797 1.0609729737242612 0.767795637251073 0.677889161502551 0.09601688108592968 256.28301099218106 1194517.8590591762 0.031520777262594245 0.032559309890219545 554.5095341420979 -2.743909017734423 -0.2931773364731882 DKEVANR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKEVANR 7 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 78.334 0.032482 103150000.0 193570.0 173780.0 156390.0 143600.0 149450.0 151680.0 187150.0 153840.0 243630.0 196410.0 False True 192527.84062764858 179564.16224777178 178408.3526337518 161779.74527636016 168481.57164044987 141194.71861631388 178096.83951757234 165320.3219836915 183590.6509747441 183874.94564493923 1.0470585862166235 0.9765558957363798 0.9702700496143539 0.8798357204616408 0.9162834612921446 0.7678844886728589 0.9685758921254864 0.8990910719447525 0.9984538694535138 1.0 17.488365389443562 4.370533016568263 1.5152511875485384 0.9114772145181451 1.0502932566455392 0.26020381066372034 0.06491978152741211 0.7330495631990851 2.545593991943172 0.017491044680212408 0.12495365409557824 23471.076911467604 -4.370533016568263 0.13881604212739407 DKEVS(ph)DDEAEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 DKEVSDDEAEEK 12 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK 255.16 1.0375e-20 10309610000.0 15097870.0 7910230.0 6589690.0 5791490.0 6030150.0 9949470.0 9381050.0 9906610.0 16262860.0 8698260.0 True False 15016584.745451063 8173517.223714982 7517461.073387733 6524692.040185144 6798053.859000729 9261686.55743313 8927252.772408884 10645891.542946286 12255096.064159306 8143129.599844949 1.8440802840393193 1.0037316885968033 0.923166085129097 0.8012511602798731 0.834820786731697 1.1373620478310302 1.0962926062946199 1.307346446156155 1.5049614418997643 1.0 22.957151932666136 1.7968133850461812 3.653506330031607 1.3055307194957948 1.0586276188180455 0.060295778230679886 0.2990415292611442 0.5161975313505359 12.664790138441438 0.15812498160336924 0.08186750996678836 62.634466853359015 -1.7968133850461812 -0.24690310067774934 DKEVS(ph)DDEAEEKEDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKEVSDDEAEEKEDK 15 2 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 DKEVS(1)DDEAEEKEDK;DKEVS(1)DDEAEEKEDK;DKEVS(1)DDEAEEKEDK 127.5 6.1237e-05 3194280000.0 1524770.0 678446.0 580862.0 492554.0 585138.0 982560.0 851726.0 951200.0 1904500.0 870090.0 True False 1516560.8077378743 701027.6649807323 662642.3206569882 554911.2858973008 659651.8559153524 914637.9398974514 810524.7594707118 1022183.3740957315 1435161.493992532 814560.1112784725 1.8618157048687225 0.8606211564674482 0.8134971397223889 0.6812404366650776 0.809825876300292 1.1228611949361285 0.9950459741989733 1.2548900442612998 1.761885309777826 1.0 19.635661642240272 1.6026772419475106 3.9016689375526212 1.4150002154448815 0.9896687247066386 0.14364390267425697 0.3536313351091137 0.27984674428118267 9.822402022080293 0.20814707729740733 0.09099518660613945 40.05689130244149 -1.6026772419475106 -0.42533149073824295 DKEVS(ph)DDEAEEKEDKEEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKEVSDDEAEEKEDKEEEK 19 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK 178.53 2.6956e-14 13040680000.0 26209140.0 9569750.0 6779220.0 5599843.0 6808995.0 12359540.0 12603720.0 12159590.0 28132840.0 10185990.0 True False 26068032.902349185 9888273.343713962 7733675.249963441 6308782.54963517 7676080.153174731 11505154.09102767 11994029.912713971 13067000.350946907 21199878.542742357 9535911.397535225 2.7336697894536925 1.0369510507689712 0.8110053593789038 0.6615814982578193 0.8049655489834763 1.2065080736804497 1.2577748903805988 1.37029380897188 2.2231622819211543 1.0 23.184939400454535 1.538888316046603 4.119519441268324 1.6609850088039528 1.1598216286052103 0.05176310317538002 0.6137815186418519 0.4204160769324633 15.7881933048111 0.3778996865320072 0.15797895544303833 34.585042686876264 -1.538888316046603 -0.5011633801987425 DKFEEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKFEEDR 7 1 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;; 92.838 0.014023 3713760000.0 9416400.0 8494200.0 8074000.0 6929500.0 7558100.0 9796900.0 9604100.0 8961000.0 12749300.0 9813700.0 False True 9365703.148660386 8776924.312147673 9210749.019533938 7806773.989502357 8520579.234631537 9119663.362421975 9139512.991775135 9629715.32303599 9607405.846867401 9187381.264068728 1.0194094355579935 0.9553238360177425 1.002543462037066 0.849727878392743 0.9274219703883398 0.9926292487815223 0.9947897805786287 1.0481458259163798 1.0457175522301836 1.0 23.131222269170483 2.249437070217287 2.049631230347868 1.0334388294968575 0.9498230083816318 0.3531065970749555 0.04551131388770716 0.3457146199009555 2.9444605659265393 0.022332628866620383 0.014900773460218626 177.59759086389622 -2.249437070217287 -0.0836158211152257 DKFEPGILQLSQWFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKFEPGILQLSQWFK 15 1 G3V3Y1;Q8N8N7;G3V2R9 G3V3Y1 PTGR2 Prostaglandin reductase 2 0 ; 200.77 6.1539e-09 812100000.0 884120.0 840380.0 832900.0 770230.0 663827.0 1003330.0 1000250.0 987450.0 1450340.0 1015760.0 False True 879359.9961549673 868351.5402795615 950165.0803034193 867741.0390265383 748361.4336391098 933972.158684772 951864.0861739352 1061138.533169501 1092923.1405603187 950933.3271641125 0.9247335970203167 0.9131571220341729 0.9991921128024986 0.9125151198710518 0.7869757135033688 0.9821636617470098 1.0009787847194276 1.115891622322297 1.1493162657571907 1.0 19.858984667319017 2.0988405416610414 2.192374222847145 1.097599306118421 0.9135517655740385 0.5938363719417277 0.06298085666849833 0.20682696126890782 1.9316237251801704 0.032728552765842814 0.01923375838939503 125.5568876355116 -2.0988405416610414 -0.18404754054438255 DKFESSFSHKPSLFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKFESSFSHKPSLFNK 16 2 A0AVT1;A0AVT1-2;H0Y8S8 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 143.02 8.7215e-07 1096900000.0 487190.0 568650.0 578480.0 589520.0 570650.0 763560.0 748680.0 605060.0 970840.0 772570.0 False True 484567.0231718971 587577.1714938154 659924.9557617024 664153.171555153 643318.8949924569 710776.8944269033 712463.4881646605 650212.649632425 731589.4905895023 723263.9211695467 0.6699726185544177 0.8123966290806813 0.9124262063211689 0.918272226936456 0.8894663153557896 0.9827351726290297 0.9850670928152736 0.898997766376906 1.0115111084298147 1.0 19.464162661425398 5.530893985184996 0.6976858232012383 0.959346337315645 2.2163727872381858e-18 0.861429838477203 0.03667180517697427 2.7762287830705943 0.45634554977404684 0.013949245902475692 2.7097927375664326 339542.3774174149 -5.530893985184996 -0.959346337315645 DKFNECGHVLYADIK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKFNECGHVLYADIK 15 1 A0A087X0X3;P52272-2;P52272 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 167.71 7.783400000000002e-07 10228530000.0 18575110.0 15242800.0 13934640.0 12232460.0 11956640.0 17519620.0 17794800.0 15725860.0 27647800.0 18296000.0 False True 18475103.67164875 15750147.383532833 15896516.189937852 13781088.181777632 13479247.231442394 16308529.906149453 16933997.541262615 16899403.527499024 20834370.15153934 17128333.616006345 1.0786282008416659 0.9195376349287356 0.9280830550312632 0.8045784540826126 0.7869561355837968 0.95213756759789 0.9886541166758848 0.9866344214422945 1.216368773438049 1.0 24.029881465320283 1.7128202788778208 1.695773731784453 1.0976677614252028 0.9048579275670566 0.37157483834682303 0.09358497894633482 0.35971990828057043 2.0625273824136494 0.0724863442026527 0.028239203065061416 51.6202708421529 -1.7128202788778208 -0.1928098338581462 DKFPGEFMK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKFPGEFMK 9 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ; 122.51 0.0005323999999999999 1366130000.0 1883130.0 2374700.0 1870480.0 2034140.0 2413100.0 3136600.0 3106000.0 2997300.0 4421500.0 3323700.0 False True 1872991.4373154137 2453740.4539635372 2133827.325496387 2291661.915434929 2720393.9814357283 2919774.224762199 2955750.9139277544 3220973.74598101 3331880.570064572 3111578.620437265 0.6019425075790646 0.7885837876141202 0.6857700176627786 0.7364949419510042 0.8742809722267072 0.938357850122999 0.9499200484647846 1.0351574357868458 1.0708007016696717 1.0 21.569215268669172 2.9222132019055076 0.8339774514901046 1.0402571371716474 0.6750975266820335 0.8967669607418333 0.048279276184443304 0.17365695092282743 0.26678856509031584 0.02733661159262026 0.03187797677872543 836.0133294351583 -2.9222132019055076 -0.3651596104896139 DKFQETSDEFEAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKFQETSDEFEAAR 14 1 G8JLG1;Q14683;V9GY57 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 ;;; 191.96 3.9061e-07 2878360000.0 942020.0 983030.0 856876.0 867553.0 908510.0 1071160.0 1102580.0 1034280.0 1260860.0 1101290.0 False True 936948.2689882611 1015749.5592958163 977516.692700291 977385.120847787 1024203.3633393454 997113.230439419 1049243.9931353712 1111463.2255674223 950137.9476583997 1031004.729338195 0.9087720379223586 0.985203588685601 0.9481204740232007 0.9479928588447635 0.993403167022119 0.967127697929639 1.0176907663739663 1.0780389206176328 0.9215650720324979 1.0 19.975619519854746 2.7746535814102855 1.3331014212193746 1.0156196321171276 0.9502529438624948 0.21265434437898512 0.04183670983636633 0.5406251140809587 1.9667609283518301 0.01844809653962751 0.01805137029425846 595.1871981350226 -2.7746535814102855 -0.06536668825463277 DKFS(ph)PFPVQDRPESSLVFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKFSPFPVQDRPESSLVFK 19 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DKFS(1)PFPVQDRPESSLVFK;DKFS(1)PFPVQDRPESSLVFK;DKFS(1)PFPVQDRPESSLVFK 155.97 1.0761e-08 4257290000.0 3014207.0 2358231.0 2177909.0 1991269.0 2092008.0 2604440.0 2879348.0 2841382.0 4141400.0 2831629.0 True False 2997978.8444218826 2436723.2932542562 2484539.6564756134 2243363.4512305898 2358412.8184971176 2424401.192992304 2740062.9370624786 3053420.3530854466 3120807.461916863 2650912.012940444 1.130923557548206 0.9192018751883789 0.9372395780574071 0.8462610000934006 0.8896609193305965 0.9145536257550511 1.0336302841010354 1.1518376838537663 1.1772580329647386 1.0 21.33805735548518 2.0227609178400785 3.532421581885557 1.1225042615049472 0.9325637692674276 0.45881049410924224 0.08268382708366186 0.18781880950679825 4.875320726103425 0.037013206499375055 0.02337972679335458 105.38066087465683 -2.0227609178400785 -0.18994049223751963 DKFSFDLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKFSFDLGK 9 1 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ; 141.88 9.6364e-05 18591200000.0 20159200.0 16916300.0 14640700.0 13821200.0 14000000.0 19241300.0 20129400.0 20703000.0 28940900.0 20912300.0 False True 20050665.107097685 17479348.819380715 16701983.300754335 15570962.502880452 15782817.015498828 17911194.22014821 19155664.020224538 22247962.987703856 21808802.98319162 19577659.11007919 1.024160498165737 0.8928211856739195 0.8531144202094944 0.795343427696319 0.8061646658957985 0.9148792569856815 0.9784450690717463 1.136395462941221 1.1139637716934077 1.0 24.222704937213596 2.0639626924947376 2.553403767765746 1.0951880331212425 0.8710789245394651 0.6326212997838135 0.06881768821021207 0.171852022728572 2.1768047232289276 0.035172321324370565 0.02100500375614286 115.86778171618585 -2.0639626924947376 -0.22410910858177735 DKFSFDLGKGEVIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKFSFDLGKGEVIK 14 2 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ; 124.68 5.3814e-05 2228540000.0 2058590.0 2028570.0 1972960.0 2192800.0 2079650.0 2758800.0 3000000.0 2678000.0 5177200.0 3361700.0 False True 2047506.7801708505 2096089.7261535402 2250735.618724257 2470408.2551671504 2344481.1004487225 2568090.649516658 2854878.538887084 2877845.958608457 3901348.4309257716 3147153.427903832 0.6505900735619987 0.666027181124641 0.7151655202979298 0.784965942004477 0.7449529087656426 0.816004274449098 0.9071303971311566 0.9144282363523828 1.2396435446505298 1.0 21.585616082971747 2.033575145460119 0.8440028934335956 1.0957953881511036 0.6955849015517359 0.7930671181300034 0.07740960650798094 0.2640641061836778 0.3496298949747341 0.06355914445693596 0.03245453523535141 108.03765409841613 -2.033575145460119 -0.40021048659936764 DKFSPFPVQDRPESSLVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKFSPFPVQDRPESSLVFK 19 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 255.6 3.4744999999999995e-31 2276300000.0 1794810.0 1799830.0 1511010.0 1454540.0 1514930.0 1839720.0 1895330.0 2004170.0 2653700.0 2073890.0 False True 1785146.9423821368 1859736.25352979 1723747.0740656368 1638684.6148626553 1707847.3558064 1712544.486635054 1803645.6470362837 2153731.342369051 1999731.1927581958 1941532.5646534406 0.9194524855681634 0.957870234775974 0.8878280516367862 0.8440160338774214 0.8796387899428548 0.8820580802056954 0.9289803734804883 1.1092944726134364 1.0299756126496613 1.0 20.888764474597878 1.8829179923793185 5.332142364375988 1.0538509465632522 0.8955001435800359 0.7619655783951147 0.03779218385706682 0.1036787456478648 4.024704054954489 0.01788635700063119 0.010612817383506962 76.36915624466137 -1.8829179923793185 -0.15835080298321624 DKGETIQGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKGETIQGLR 10 1 F5H0D0;Q14232-2;Q14232;H0YGG4 F5H0D0;H0YGG4 EIF2B1 Translation initiation factor eIF-2B subunit alpha 0 ;;; 116.55 0.00098122 2833580000.0 2105790.0 2129270.0 2054870.0 1849020.0 1957370.0 2310070.0 2376940.0 2223150.0 2836510.0 2357130.0 False True 2094452.6606152612 2200141.464779106 2344177.8347497727 2083105.7424157092 2206629.467259064 2150380.2982198633 2261958.331407418 2389052.7419269583 2137490.117786693 2206695.9453594754 0.9491351379965809 0.9970297309902829 1.062302144379887 0.9439930982772377 0.9999698743723388 0.974479652596435 1.0250430450847365 1.0826379352130349 0.9686382586063488 1.0 21.073456427604405 2.1331073393293933 6.420804915057395 1.032842150538997 0.9903013694455444 0.08535088275641234 0.04136174532477458 0.36192365451991776 19.46970369389051 0.015509863259466676 0.011417962585796962 135.86492060312486 -2.1331073393293933 -0.04254078109345272 DKGEYTLVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKGEYTLVVK 10 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 145.09 2.8324e-05 2649500000.0 4131700.0 3728600.0 3347200.0 3058400.0 2959000.0 4360600.0 4106400.0 4098200.0 6057700.0 4724500.0 False True 4109455.3862750204 3852704.197013701 3818456.665616051 3445593.1264151856 3335811.110632928 4059161.9857482775 3907757.7440286325 4404028.494237938 4564861.004021295 4422978.365152052 0.9291149643988247 0.8710655759405357 0.8633224832617469 0.7790210220249933 0.7542001871217046 0.9177440291659064 0.8835127421868574 0.9957155858903999 1.0320785288002117 1.0 22.07658675468437 1.8484037568776677 1.6579696295305557 1.0213533371039711 0.8437044946880355 0.6582725029469936 0.05097882133149876 0.22846545875805563 1.1886854573261814 0.03814492827971283 0.016539713199010535 70.53485158705651 -1.8484037568776677 -0.1776488424159356 DKGFGFIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKGFGFIR 8 1 Q15233;Q15233-2;H7C367;C9JYS8;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ; 108.98 0.0033806999999999995 2776000000.0 3380200.0 3751900.0 4172900.0 3100100.0 2372700.0 3009900.0 3810200.0 3012600.0 5949000.0 3591300.0 False True 3362001.378775529 3876779.723428556 4760408.048502984 3492572.342139582 2674849.2809052896 2801832.69754248 3625886.069622515 3237415.50967283 4482948.662515915 3362100.1593333776 0.9999706193887251 1.1530827577121399 1.4159031030910325 1.0388067507281145 0.7955888147709576 0.8333578908303598 1.078458671005637 0.9629146534155396 1.3333774873038804 1.0 21.680931273440542 3.49663329598317 24.544699951916513 0.987659189600427 1.1928885291059734 0.20353954142728037 0.16666358753141877 885.0539051812665 1113329.6815989926 0.04521470859383185 0.06888544757747334 3137.85807054252 -3.49663329598317 0.20522933950554645 DKGHDGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKGHDGVK 8 1 C9K0G7;C9JM78;C9JQ90;A0A0G2JRX6;E9PCG9;Q02338 C9K0G7 BDH1 D-beta-hydroxybutyrate dehydrogenase, mitochondrial 0 68.735 0.03349 26442000.0 48862.0 40852.0 42843.0 31789.0 49220.0 63164.0 43852.0 36017.0 73392.0 62218.0 False True 48598.932421078534 42211.734124444505 48874.9220019683 35813.48414060041 55487.87525020369 58797.62135206262 41730.71122909207 38704.77143062021 55305.52500241518 58247.193972490255 0.8343566291627966 0.7246998738579719 0.8390948759703615 0.6148533808772809 0.9526274394679034 1.0094498522938689 0.7164415722549862 0.6644916053621434 0.94949681230199 1.0 15.829900929926113 3.223516898277965 24.997574637985316 0.8464937371175089 0.7573434422128773 0.17094033989537538 0.1249058103614194 610.9339864494574 1015164.0835537122 0.0391807389712194 0.04700424721198527 1673.0807342399917 -3.223516898277965 -0.08915029490463156 DKGLQTSQDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 DKGLQTSQDAR 11 1 P27797 P27797 CALR Calreticulin 0 ;;;;; 168.31 1.6615e-05 4463270000.0 8426740.0 9740940.0 8885560.0 8048380.0 8542920.0 10713620.0 10840640.0 9818860.0 13424200.0 10072810.0 False True 8381371.368138823 10065161.299377425 10136569.61332795 9067304.082780996 9630810.224146077 9973012.666548748 10316236.827933602 10551593.192360805 10115985.785064073 9429954.642033495 0.8888029355707957 1.0673605209629038 1.0749330190990272 0.9615427037542679 1.0212997400027015 1.057588614699651 1.0939858376359048 1.1189442147820807 1.0727502060267218 1.0 23.16881940089573 2.635738211346241 2.7357654083977643 1.0851571105281508 1.0072563952974314 0.2353613749355069 0.057527129040304 0.36801670438914497 5.372186587277421 0.01998675439334944 0.018722186055495166 432.2531943035314 -2.635738211346241 -0.0779007152307194 DKGNFYEASDWFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKGNFYEASDWFK 13 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 0 118.51 0.00038493 234410000.0 490750.0 393020.0 435210.0 376280.0 365270.0 443210.0 531620.0 490550.0 642510.0 497590.0 False True 488107.85652745015 406101.43311439344 496483.78508686717 423917.00941914215 411784.96937508957 412571.9359041172 505903.50961438386 527157.3319624272 484172.0196929064 465833.38019176875 1.047816402350797 0.8717740084388423 1.0657969269666348 0.910018533331873 0.8839748006155567 0.8856641740320852 1.0860181582653428 1.1316435325983152 1.0393673795844949 1.0 18.829454496792977 2.2249284355966252 24.9978704081642 1.0816575544236584 0.9421226753881894 0.4003285105098938 0.07070280878425832 200.46757449356323 367602.9380402554 0.02588190486144878 0.019217569248537226 167.85274023359173 -2.2249284355966252 -0.13953487903546902 DKGS(ph)PAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKGSPAVK 8 1 O15119;O15119-2;O15119-3 O15119 TBX3 T-box transcription factor TBX3 1 DKGS(1)PAVK;DKGS(1)PAVK 61.435 0.052072 772230000.0 1136820.0 728020.0 599630.0 558250.0 623670.0 625250.0 1026920.0 968360.0 1771670.0 1187790.0 True False 1130699.487432576 752251.705602616 684052.691922607 628924.3927613377 703090.6777182954 582027.9391801837 977243.9563846408 1040623.9404324447 1335065.6676617218 1111984.2252818185 1.016830510474206 0.6764949434529677 0.6151640251454488 0.5655875132598618 0.6322847588418854 0.5234138452212989 0.8788289745180248 0.9358261716066264 1.2006156538087274 1.0 20.084704891316246 1.7887324211518698 2.0360131344615833 1.0824548244467374 0.6657172444923463 0.5837728204987467 0.1414885535205206 0.21059535416188876 1.7113842293689987 0.0940290112906761 0.041026666571799375 61.479796478730705 -1.7887324211518698 -0.4167375799543911 DKHIEEVR ddPTM_BT-474_Trastuzumab_2h_R1 8 DKHIEEVR 8 1 P16949 P16949 STMN1 Stathmin 0 ;;;;;;; 173.37 0.00016712 8788470000.0 18719680.0 18583850.0 17151680.0 15800490.0 16026920.0 21632250.0 20431050.0 7105890.0 23595200.0 17387640.0 False True 18618895.322831992 19202402.213075433 19566487.458924916 17800830.413939256 18067853.26300273 20136863.474339116 19442722.057309613 7636167.594778288 17780479.119481534 16277945.928892437 1.1438111051704933 1.179657574546445 1.202024355185718 1.0935550770164302 1.1099590416339513 1.237064157990433 1.1944210984753227 0.46911125200536025 1.0923048397600452 1.0 23.956415325414937 1.7786874779860296 24.999999947682287 0.7985276424030618 1.1655284927260061 0.436885477915842 0.15863003321673014 41.26111237561522 25716.473005418466 0.0684221026125035 0.03801691966718279 60.074128335091494 -1.7786874779860296 0.36700085032294427 DKHIEEVRK ddPTM_BT-474_Trastuzumab_2h_R1 5 DKHIEEVRK 9 2 P16949 P16949 STMN1 Stathmin 0 ;;;; 128.81 0.00024436 7473050000.0 15251010.0 14071240.0 13366470.0 12605270.0 12547080.0 18115270.0 17430680.0 5910075.0 24840770.0 15752340.0 False True 15168900.25670651 14539592.717155797 15248352.792560032 14201095.88955256 14144876.26563034 16863004.023658723 16587491.416736094 6351114.807252765 18719095.08276442 14747012.174943207 1.0286083768534575 0.9859348147728637 1.033996080810773 0.962981227728406 0.959168955570813 1.1434861396745042 1.1248035344352711 0.430671293405725 1.269348316845511 1.0 23.813919350412764 DKHKEEDKNSER ddPTM_BT-474_Trastuzumab_2h_R1 3 DKHKEEDKNSER 12 3 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ;; 206.18 5.5821e-08 1094110000.0 609810.0 468470.0 443150.0 405633.0 425210.0 466905.0 565420.0 290068.0 1010570.0 561130.0 False True 606526.8507162597 484062.740753905 505541.66807114903 456986.0962095121 479357.9730828754 434628.95632614795 538068.4744858446 311714.3470954589 761528.5644442275 525318.2029924379 1.15458944171594 0.9214657668370826 0.9623532274179094 0.869922446255095 0.9125097328671399 0.8273632130969666 1.0242715204247173 0.5933819641501098 1.4496519635265521 1.0 19.002832051147063 4.738948307985604 7.5357829098940075 0.9196974223791634 1.1571261546597462 0.06344518632803742 0.2043508392355596 0.22794653356372505 126.79027314088142 0.04536015918983084 0.2736714903783033 54821.1709995148 -4.738948307985604 0.2374287322805828 DKIEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKIEHK 6 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3;H0YCT3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 0 67.757 0.058842 54414000.0 193210.0 156690.0 128330.0 122940.0 135070.0 115050.0 168180.0 179840.0 238130.0 183390.0 False True 192169.77882764922 161905.33192889486 146397.74853564406 138504.19139467768 152270.36387738766 107096.86429856891 160044.49089000974 193260.57400901642 179446.05227852025 171685.8931919217 1.1193102429960817 0.9430322370627533 0.8527069161820482 0.8067301792806509 0.8869124949431337 0.6237953643567503 0.9321936002691936 1.1256636781041593 1.0451997478786665 1.0 17.389411977619886 1.9886584588575005 24.339822428863776 1.0604200344397252 0.8642847277133281 0.3249544793977309 0.11881577163828644 431.91268633407014 926917.7137489923 0.04861077880200755 0.03344947350426317 97.42231804328542 -1.9886584588575005 -0.19613530672639712 DKIIVNDR ddPTM_BT-474_Trastuzumab_2h_R1 5 DKIIVNDR 8 1 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ;;;; 120.09 0.0014306 6005170000.0 6170540.0 8125700.0 7718360.0 7847460.0 7816850.0 8057600.0 8136500.0 7610840.0 8699500.0 8255500.0 False True 6137318.498251445 8396159.012410618 8805037.998812225 8840947.631381802 8812279.513400128 7500597.077550186 7742906.410551581 8178799.527862442 6555624.79232765 7728626.922110869 0.7941020520337395 1.0863713693295252 1.1392758490672963 1.1439221637272579 1.140212822045923 0.970495426049314 1.0018476100068772 1.058247423544753 0.8482263225273081 1.0 22.881780695166597 2.7130283195353395 24.622047202674548 0.9880466779509898 1.0711790192989021 0.1255553368121043 0.10808151487051079 1420.492755359034 1369848.4715727444 0.03556292532898987 0.033538546327240536 516.4500449208832 -2.7130283195353395 0.08313234134791236 DKITTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKITTR 6 1 P49720 P49720 PSMB3 Proteasome subunit beta type-3 0 ; 102.72 0.032194 477260000.0 477690.0 496630.0 491500.0 453130.0 461070.0 442720.0 513180.0 510910.0 706580.0 599520.0 False True 475118.1701163488 513160.0293308251 560698.9278054157 510496.2115395346 519784.5315240027 412115.808450782 488355.52286202414 549036.6985484118 532452.8266869212 561258.1203251044 0.8465234673863431 0.9143030822139038 0.9990036803042336 0.9095569276464697 0.9261060333931944 0.7342714404061843 0.8701086098837162 0.9782249533073776 0.9486772794993183 1.0 19.098304887462998 1.708389844051404 6.73790756888296 0.9721288103179405 0.8878633148398638 0.28619322430252603 0.0648296096101494 0.19626385984596212 20.998066850126136 0.03500493575729999 0.018082461674354497 51.096346006723174 -1.708389844051404 -0.08426549547807671 DKKS(ph)PLIESTANMDNNQSQK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKKSPLIESTANMDNNQSQK 20 2 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 DKKS(1)PLIESTANMDNNQSQK;DKKS(0.995)PLIES(0.002)T(0.002)ANMDNNQSQK;DKKS(1)PLIESTANMDNNQSQK;DKKS(1)PLIESTANMDNNQSQK 304.49 2.807e-55 2266590000.0 2007990.0 1167700.0 1171260.0 1138220.0 1121240.0 1740140.0 1787830.0 1654000.0 3261890.0 1758500.0 True False 1997179.2049486616 1206566.188610445 1336163.2272255756 1282318.5352956753 1264023.267889849 1619848.2176489497 1701345.832726164 1777429.878841818 2458040.9165866594 1646271.024472407 1.2131533479359589 0.7329085980828232 0.8116301674287112 0.7789231033247576 0.7678099469040586 0.9839499047054386 1.0334542778406777 1.0796702683942605 1.4930961427656824 1.0 20.650770434533918 1.9559619127700134 1.467290179039568 1.2249989962037429 0.8534284294898521 0.39777029140822506 0.17435746872939295 0.3768267892418475 1.5092665722517429 0.11686520605814338 0.053766924424480333 90.35702279625251 -1.9559619127700134 -0.37157056671389077 DKLCS(ph)PLSEPGDPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKLCSPLSEPGDPSK 15 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 DKLCS(0.998)PLS(0.002)EPGDPSK 173.77 5.7581e-07 489590000.0 830730.0 629930.0 558440.0 512140.0 565710.0 899260.0 755080.0 692550.0 1313800.0 787980.0 True False 826257.4419827791 650896.8392492742 637063.4979525052 576976.8714891026 637749.8152741313 837096.2728303442 718553.8957142861 744231.597697644 990031.5940180549 737690.4417763809 1.120059845147412 0.8823441411032722 0.8635919104745848 0.7821395517877727 0.8645222699895778 1.13475277084327 0.9740588396183996 1.0088670742507004 1.3420691633661797 1.0 19.492656017274896 2.744527946666355 24.89673599953225 1.0756944174986736 0.8925582582169378 0.3536015245499279 0.12674675136720415 554.0459133321701 2311577.397980957 0.03951704018494292 0.04094073872687562 555.3003493126546 -2.744527946666355 -0.18313615928173577 DKLDGNELDLSLSDLNEVPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKLDGNELDLSLSDLNEVPVK 21 1 Q96AG4;I3L223 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 0 ; 197.31 8.363400000000001e-22 487410000.0 526940.0 526770.0 611610.0 389250.0 590930.0 857050.0 657250.0 578020.0 974280.0 679280.0 False True 524103.01358853723 544303.221010811 697719.3717905809 438529.010089298 666181.4327834803 797804.1507786913 625456.306561178 621154.787526087 734181.7486831419 635927.7688391333 0.8241549422275918 0.8559198822287944 1.097167643841448 0.6895893395091385 1.047574057034141 1.2545515227854547 0.9835335665604433 0.9767694036383818 1.1545049369732165 1.0 19.278503382312 3.0379950856352242 24.959272947703788 1.0663714915400488 0.880671449672058 0.3961920283738397 0.12233756162574758 180.06155868164123 118282.73946076089 0.03520654590934072 0.04207977717020504 1091.4279860602055 -3.0379950856352242 -0.18570004186799083 DKLEEILR ddPTM_BT-474_Trastuzumab_2h_R1 3 DKLEEILR 8 1 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 ;; 110.14 0.0031775 1116910000.0 1711390.0 1573620.0 1511400.0 1387010.0 1278600.0 1701370.0 1752000.0 1511130.0 2423690.0 1780010.0 False True 1702176.0663933046 1625996.9904266228 1724191.9826756986 1562605.3237866603 1441422.1311440545 1583758.2964941876 1667249.0667100532 1623898.1939626597 1826404.0752820985 1666408.2378567676 1.0214640252754268 0.9757494913238551 1.034675623599442 0.9377085928214012 0.8649874012852478 0.9504023447046329 1.0005045755500868 0.974490018154986 1.0960123898757892 1.0 20.668310445767922 -0.5997048008593325 6.277462201447669 0.9999997891644657 0.9796802524705822 0.0018062376496946753 0.05878167126352366 0.0 0.0 0.05778813545663675 0.013620794151171539 0.2513594394223702 0.5997048008593325 -0.020319536693883533 DKLELEITDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKLELEITDSK 11 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 162.97 2.2346e-05 347190000.0 1538700.0 1079900.0 992760.0 833380.0 886340.0 1404700.0 1306500.0 1421700.0 1936900.0 1364100.0 False True 1530415.810165643 1115843.8186866646 1132531.9787753916 938885.8225516237 999210.1452512292 1307596.3953081253 1243299.6036853236 1527794.4732463206 1459576.9481302868 1277041.970135235 1.1984068229202964 0.8737722367640743 0.8868400610635059 0.7352035755349516 0.7824411167515628 1.0239259365685958 0.9735777153460836 1.1963541598280687 1.1429357705257892 1.0 20.284374509486945 2.1687901020422378 1.9896388060647967 1.125505570482373 0.8902638034919287 0.30480311268172233 0.12979466510292384 0.3571798172052322 2.797704287573479 0.06759046455808157 0.04120816928531523 147.4993484962424 -2.1687901020422378 -0.2352417669904444 DKLELEITDSKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKLELEITDSKK 12 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ; 153.7 3.5576e-05 2314900000.0 7413900.0 4981000.0 4750600.0 4029400.0 4248700.0 6715900.0 6282500.0 6471600.0 11335000.0 6513900.0 False True 7373984.386161731 5146789.5739219105 5419443.187044579 4539521.626856312 4789746.760982132 6251645.640528108 5978591.473519357 6954543.654118937 8541641.131218344 6098177.325169632 1.2092112106557362 0.8439881786774285 0.8886988518153376 0.7444063012270699 0.7854390755763888 1.025166259879825 0.9803899025440443 1.140429883108636 1.4006875621611647 1.0 22.539946671528725 1.8694297946091714 1.791682782418375 1.2114843206711257 0.8948138732919106 0.37468833053325146 0.15274623724095915 0.3330451501095321 2.011547699919059 0.10054293291583594 0.04525057879490886 74.03375793302114 -1.8694297946091714 -0.316670447379215 DKLESEMEDAYHEHQANLLR ddPTM_BT-474_Trastuzumab_2h_R1 9 DKLESEMEDAYHEHQANLLR 20 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;;;;;;; 328.17 6.0798999999999976e-80 24020930000.0 7578512.0 6847818.0 6242780.0 5899726.0 5944656.0 7667322.0 7893277.0 1532359.0 10567250.0 5462946.0 False True 7537710.133443838 7075743.482536611 7121709.1607835 6646630.706687461 6701672.704863364 7137298.0770745855 7511449.0362636605 1646711.4097413376 7963092.831395427 5114296.109216627 1.4738509410630143 1.3835224498998409 1.3925101340826267 1.299617887730311 1.310380267733438 1.3955582400112199 1.4687161000957791 0.3219820234447805 1.5570261598746498 1.0 22.286104261959114 1.8064256645102883 24.999999999999996 0.885453223611998 1.3828487133097769 0.31396792813010543 0.2845560040655161 150.92620633813522 55609.25155810077 0.11117094261241645 0.07049800478774183 64.03621653729357 -1.8064256645102883 0.4973954896977789 DKLFDQR ddPTM_BT-474_Trastuzumab_2h_R1 5 DKLFDQR 7 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;; 79.47399999999998 0.029664 6242650000.0 15716800.0 16247500.0 15521000.0 14924600.0 13831400.0 17066000.0 18281200.0 16151200.0 25066900.0 18358100.0 False True 15632182.495100634 16788288.215678867 17706221.88904955 16814052.82974627 15592746.804869294 15886267.589042822 17396868.515034154 17356484.558131814 18889498.374251198 17186470.340839855 0.9095632893249873 0.9768316520341703 1.0302419017926339 0.978330773933923 0.9072687117037971 0.924347307736168 1.0122420817085596 1.0098923289029254 1.0990912036990208 1.0 24.034769946977697 1.8286548515427254 2.1847580746622386 1.0448542755861725 0.9589053474419075 0.41845408627182856 0.043254952239322776 0.31014322145462425 2.8112625932020565 0.02811001907302273 0.012966779515035805 67.39921705077997 -1.8286548515427254 -0.08594892814426502 DKLNNLVLFDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKLNNLVLFDK 11 1 P62851 P62851 RPS25 40S ribosomal protein S25 0 ; 196.5 5.4978e-08 6071600000.0 18941600.0 16882800.0 16182600.0 14357300.0 13511900.0 20285200.0 19189000.0 18811800.0 28577700.0 20901400.0 False True 18839620.53020958 17444733.792131905 18460969.41831925 16174932.707912879 15232560.37369417 18882931.870224483 18260754.76090138 20215632.040384848 21535108.756560978 19567454.75741116 0.9628038374829555 0.891517778290747 0.9434527713077845 0.8266242548375707 0.7784640650785125 0.9650172750787931 0.9332207477819838 1.0331252731134177 1.10055748300144 1.0 24.221952773386818 1.910254500015843 1.725856465973935 1.0554054520000253 0.8860827566743986 0.5669119136491637 0.05902054120851766 0.26051634478432256 1.4478552433120124 0.04026711953947 0.01854889284046844 81.33069808950206 -1.910254500015843 -0.16932269532562672 DKLPLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKLPLEK 7 1 Q92831 Q92831 KAT2B Histone acetyltransferase KAT2B 0 109.21 0.0064555 526610000.0 1170800.0 1168500.0 947780.0 1018600.0 1066400.0 1482600.0 1842400.0 1397000.0 2232600.0 1920400.0 False True 1164496.5428881098 1207392.8161268348 1081219.1857485597 1147554.6555605896 1202199.718951994 1380111.3516649986 1753276.0733485192 1501251.2338222608 1682405.6453072866 1797838.427862843 0.6477203539766306 0.6715802696252896 0.6013995301200925 0.6382968779484429 0.6686917468891203 0.7676503796314933 0.9752133707769853 0.8350312300348667 0.9357935725665985 1.0 20.777831940679842 2.5137035368016654 2.5449288771871785 0.9160528909928967 0.6424350039564428 0.891468229187145 0.04742555989076465 0.08874618377004977 1.1527997411957087 0.01736637053527006 0.015046336150060778 326.3649690272184 -2.5137035368016654 -0.27361788703645384 DKLPNYEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKLPNYEEK 9 1 Q9BV57;Q9BV57-2 Q9BV57 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 0 ;;; 162.26 5.8288e-05 1055860000.0 2410060.0 1736370.0 1593450.0 1350810.0 1512400.0 2411250.0 2214020.0 1978080.0 2543840.0 2200820.0 False True 2397084.5047428366 1794164.0257921705 1817793.909484313 1521822.407498332 1704995.1753028852 2244565.9629719635 2106919.3942222605 2125694.374086715 1916944.717709612 2060361.7833832023 1.163428929848777 0.8708004779850247 0.8822692811256757 0.7386190230142177 0.8275222288889528 1.0894038032904543 1.022596813440506 1.0317092809769717 0.9303922899219703 1.0 20.974466254919843 2.7419025882234953 24.980746541944605 1.0186374990978877 0.8855338116195905 0.2286467940137259 0.10757868037923968 415.4049602963332 3105097.6647616923 0.03424655150994598 0.03498395908844547 551.953622802418 -2.7419025882234953 -0.13310368747829715 DKLSELQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DKLSELQLR 9 1 Q9BVK6 Q9BVK6 TMED9 Transmembrane emp24 domain-containing protein 9 0 ;; 182.28 4.2413e-05 2030250000.0 2334600.0 2879110.0 2951490.0 2184450.0 2291400.0 2857170.0 2886250.0 2269470.0 4183750.0 2783520.0 False True 2322030.772998442 2974939.435891255 3367034.137189028 2461001.146023298 2583196.207808141 2659660.5629547327 2746631.060954282 2438829.375535152 3152720.8718777904 2605873.3705086308 0.8910758286559463 1.1416285493990015 1.2920943033129153 0.9444055010021245 0.9912976728043914 1.020640754479794 1.0540155527274058 0.9358971173104723 1.2098519089829842 1.0 21.313335548787432 DKLSGEYEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKLSGEYEK 9 1 P34932;A0A087WYC1 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;; 99.215 0.0050048 6087710000.0 2745920.0 2623280.0 2206860.0 2270660.0 2441920.0 3537180.0 3270090.0 3194140.0 4565490.0 3503080.0 False True 2731136.2718203957 2710594.2889937507 2517566.70562901 2558125.3231839845 2752884.037606204 3292663.072226095 3111903.253743087 3432502.946314272 3440386.1639317223 3279510.435262327 0.8327877973658385 0.8265240628139459 0.7676654047382626 0.780032682829186 0.8394192035513378 1.0040105488985023 0.9488926213751068 1.0466510212643088 1.0490548000517421 1.0 21.645049034980268 2.7794163695593825 2.9119023603771326 1.0137393435318436 0.8007202817204642 0.9093298552066132 0.031798659301263396 0.07705740155197574 1.3065790857079527 0.011274809551988015 0.011558503655587095 601.750374955285 -2.7794163695593825 -0.21301906181137942 DKLYER ddPTM_BT-474_Trastuzumab_2h_R1 2 DKLYER 6 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 0 ; 101.99 0.032763 1145310000.0 1803220.0 2017610.0 1777330.0 1606210.0 1693600.0 2013470.0 2119800.0 1836220.0 2892400.0 2040960.0 False True 1793511.6638765752 2084764.929178997 2027562.6151707 1809556.0213115767 1909269.9212463442 1874283.558098563 2017257.1755776117 1973248.0605362288 2179606.7761743204 1910704.1854462335 0.9386652719650118 1.0910976932267056 1.061159875303866 0.9470623632349273 0.9992493530862527 0.9809386363283835 1.0557663456975646 1.0327334160705721 1.1407348101167667 1.0 20.865673007386146 1.9114163857452686 2.155584109856807 1.0654206312962546 1.0077396945567996 0.16803777696608124 0.05535758403621411 0.5794702222974563 4.957673411979818 0.03258466463857134 0.016025803547507156 81.54857674103167 -1.9114163857452686 -0.05768093673945507 DKMMNGGHYTYSENR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKMMNGGHYTYSENR 15 1 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 ; 174.62 5.4236e-07 171916000.0 174115.0 282980.0 285310.0 274810.0 255700.0 269040.0 319200.0 254150.0 398220.0 307100.0 False True 173177.5841859949 292398.81823497766 325479.1680410233 309600.91782309563 288261.8793473607 250441.89805203772 303759.0765375857 273115.96354755043 300084.01687461586 287500.61507846235 0.6023555258785539 1.0170371919210626 1.1320990320392745 1.0768704537852967 1.0026478700530452 0.871100390458953 1.0565510493070989 0.949966536499457 1.0437682604356147 1.0 18.133205516997123 4.738775487262451 24.99999923829668 1.014487742199213 0.6023554091927402 0.7727115720302353 0.06740191757234329 8.366431800433551 972818.2102634739 0.016862129803880365 0.09799506262667411 54799.36010852046 -4.738775487262451 -0.4121323330064727 DKNEFHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKNEFHK 7 1 Q9GZL7 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 0 80.067 0.018578 185260000.0 817000.0 710100.0 646530.0 604420.0 595690.0 688860.0 721730.0 761030.0 1186200.0 851480.0 False True 812601.3627772331 733735.2492354853 737555.8042604984 680939.5100274209 671547.5905687489 641240.7296020178 686817.1626236568 817821.9230320371 893876.9042656561 797137.8174112968 1.0193988354688204 0.9204622252376494 0.9252550665024389 0.8542305924448177 0.842448540140271 0.8044289401354029 0.8616040383758156 1.0259479667994074 1.1213580446710198 1.0 19.604469648222288 1.6354539030459476 4.471322756173935 1.063814254429154 0.8860135089911355 0.5832703101126182 0.06195809282599002 0.1134226690369032 5.136994280029774 0.03701875799274321 0.01711974161490329 43.197031492278285 -1.6354539030459476 -0.1778007454380185 DKNEQAFEEVFQNANFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKNEQAFEEVFQNANFR 17 1 P27694;I3L4R8 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 ;;; 318.55 1.8969999999999996e-58 1583840000.0 2273210.0 2189450.0 2111860.0 1924620.0 2019890.0 2465270.0 2585310.0 2381750.0 3180550.0 2597480.0 False True 2260971.2899373733 2262324.519699528 2409191.531383814 2168276.694664263 2277111.0186739955 2294851.6875213645 2460248.678456718 2559488.279281439 2396746.069686503 2431706.6025854917 0.9297878648408547 0.9303443586878986 0.9907410412186491 0.891668712154197 0.9364250671741715 0.943720630227916 1.011737466946415 1.0525481472806317 0.9856230464391481 1.0 21.213537740322167 2.2320060987435872 4.422147100071628 1.0216811088028073 0.9364968617172591 0.6335770178298268 0.027870541045884517 0.11475264282719277 5.398031149501445 0.010380961328460886 0.007943851703874075 170.61063474749 -2.2320060987435872 -0.08518424708554817 DKNESLTMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKNESLTMR 9 1 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;Q14980-5;F5H4J1;F5H6Y5 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 126.71 0.00042494 378400000.0 370142.0 362920.0 320501.0 312081.0 325919.0 413320.0 388180.0 347261.0 500940.0 393301.0 False True 368149.19659864187 374999.57281022763 365624.754955368 351590.42260161403 367422.8527767395 384748.16125062545 369402.2504083961 373175.379175628 377490.049252097 368200.1934580736 0.9998614969238534 1.018466528461855 0.9930053309355502 0.9548892935105128 0.9978888096879216 1.0449428546930846 1.0032646831035938 1.0135121757292638 1.0252304478897054 1.0 18.490130859139107 2.9809962680581013 24.94005125621122 1.0171179821605032 0.9914323705427991 0.30699247366356297 0.0186487083441123 938.3901269405166 1231523.5336764234 0.0058714698858435554 0.006326551791102611 957.1858460526167 -2.9809962680581013 -0.025685611617704107 DKNNMQHR ddPTM_BT-474_Trastuzumab_2h_R1 12 DKNNMQHR 8 1 P31942;P31942-3;P31942-2;P31942-4 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ;;;;;;;;;;; 157.91 0.00022191 2943675000.0 5061293.0 5108315.0 4855785.0 4288511.0 3744760.8 3066054.9 4693838.0 4152555.0 7070378.0 5238954.0 False True 5034043.560850515 5278342.176733367 5539437.320760166 4831436.052889064 4221633.890943786 2854105.7414798965 4466779.123737552 4462439.740347037 5327978.080111273 4904599.470425825 1.0263923876363856 1.076202492896957 1.1294372464382345 0.9850826926891936 0.8607499789533798 0.5819243260718492 0.9107327011454699 0.9098479431919038 1.0863227695224396 1.0 22.225703894224505 3.443264566288007 3.9147162530670245 0.8769028882119363 1.076010219961543 0.3069244958225441 0.12416146549936358 0.25934857694023916 8.645146837272206 0.036759997040230294 0.052881350129429315 2775.010088222362 -3.443264566288007 0.1991073317496066 DKNSIYSGLEAFGDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKNSIYSGLEAFGDVK 16 1 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ; 182.31 1.974e-09 1144380000.0 1781870.0 1510150.0 1501970.0 1250950.0 1325680.0 2067220.0 2078200.0 1918020.0 2541000.0 2086780.0 False True 1772276.6099043684 1560414.4298450458 1713434.3206427263 1409320.141737208 1494497.4900790341 1924317.9471124506 1977669.526505046 2061152.3919082156 1914804.5976555631 1953599.9138177584 0.9071850368998815 0.7987379702508571 0.8770651086354235 0.7213965007723052 0.7649967014783807 0.9850112776427776 1.0123206458584708 1.0550534822046937 0.9801416268050602 1.0 20.897703611118242 2.647420687273071 4.960750134158469 1.0174606595379163 0.8117613904713142 0.7718746846589213 0.0523702554609788 0.10326714782976039 4.218761272630716 0.017664626460583657 0.016643421533497155 444.0385617277192 -2.647420687273071 -0.20569926906660208 DKNSVNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKNSVNFK 8 1 P12956;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 136.99 0.00069983 4991600000.0 3296770.0 3156660.0 3034150.0 2702020.0 2604740.0 3163210.0 3525500.0 3282560.0 4561110.0 3362270.0 False True 3279020.5566255823 3261727.519858735 3461331.946695425 3044095.4549556514 2936438.1994964536 2944544.738095399 3354958.0962821376 3527521.2957019373 3437085.5562427235 3147687.0500158304 1.041723813239023 1.036229926301705 1.0996429732994 0.9670896142424139 0.932887594235801 0.9354629895880501 1.065848682849607 1.1206709052236297 1.0919400504651304 1.0 21.585860681378723 2.02025102854338 23.78052298721244 1.0865236068616844 1.0031779805203516 0.24512004969596057 0.05603021162437746 167.6050202736791 196815.07828181869 0.022667282269278406 0.016738154570839915 104.77339785777801 -2.02025102854338 -0.0833456263413328 DKNTVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKNTVVR 7 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 82.45200000000001 0.022299 141030000.0 260600.0 302670.0 292090.0 265940.0 308540.0 292140.0 315410.0 291590.0 384890.0 359020.0 False True 259196.95855538166 312744.1879821209 333213.7331082076 299607.9767325575 347830.7401401433 271945.0494235889 300152.4133167914 313349.926464018 290039.0167617668 336107.0362275137 0.7711738542121119 0.9304898567205886 0.9913917210666556 0.8914064403273912 1.0348808642753131 0.8091025182808342 0.8930262712906007 0.9322920757062306 0.8629364621972297 1.0 18.35856121947572 DKPAQIR ddPTM_BT-474_Trastuzumab_2h_R1 6 DKPAQIR 7 1 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ;;;;; 130.22 0.003269 6975690000.0 6019610.0 5990330.0 5335080.0 5029740.0 5232180.0 6120520.0 6391100.0 6070940.0 7990300.0 6306250.0 False True 5987201.088601551 6189714.512819048 6086212.89065334 5666504.568289137 5898467.109439465 5697422.858554344 6081938.076627079 6523984.370408672 6021197.629534541 5903779.725947742 1.0141301617821483 1.048432495815281 1.0309010791686188 0.9598096188081416 0.9991001330071771 0.9650466519801818 1.0301769982874383 1.1050521315582056 1.0198885983280734 1.0 22.49320746378969 1.9999275617533678 24.99999999253378 1.0568931701236448 1.003571971493812 0.15841681019357956 0.03635329414713114 3.140676370429801 1083846.8841272725 0.014029000273170602 0.010249774514309262 99.98332186826926 -1.9999275617533678 -0.053321198629832756 DKPASSMS(ph)DDEMPVLEIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKPASSMSDDEMPVLEIPR 19 1 Q96PN7 Q96PN7 TRERF1 Transcriptional-regulating factor 1 1 DKPAS(0.001)S(0.005)MS(0.993)DDEMPVLEIPR 160.0 1.9566e-11 169020000.0 132890.0 108170.0 103750.0 108730.0 96768.0 139130.0 137680.0 120280.0 159080.0 144580.0 True False 132174.53500546707 111770.37305985412 118357.09818883393 122495.20685166208 109090.83121112775 129512.27057679185 131019.89241132444 129255.90436946435 119876.86556278913 135352.7806188346 0.9765188007306791 0.8257707935429075 0.8744341833814112 0.905006947708148 0.8059740680048323 0.9568497225151943 0.9679881847443389 0.9549556631086908 0.8856623780812674 1.0 17.04636500028889 2.6936495301349366 24.865027286027317 0.9519855456205629 0.8760181004315589 0.3597251191866351 0.050365594519978005 442.305921464276 244882.25928847582 0.015416438965302159 0.01453480804480423 493.9119457543473 -2.6936495301349366 -0.075967445189004 DKPEEQWWNAEDSEGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKPEEQWWNAEDSEGKR 17 2 P46108-2;P46108 P46108-2 CRK Adapter molecule crk 0 ;;; 224.19 1.5743e-15 2068290000.0 1749770.0 1374340.0 1140570.0 1059410.0 1065280.0 1647890.0 1616580.0 1484060.0 2337750.0 1563780.0 False True 1740349.4327377246 1420084.0760939252 1301152.3419878383 1193531.1973762468 1200937.0935907562 1533975.2430158092 1538379.849464694 1594808.0931039841 1761642.8367450999 1463978.2215805848 1.188780957997282 0.9700172141636989 0.8887784823622913 0.8152656779877847 0.8203244255192293 1.047812884374504 1.050821540093528 1.089365995746951 1.2033258492350667 1.0 20.481462661299005 2.5439305717970746 6.690493097288339 1.086574817487791 0.9288817457436126 0.30167282225554837 0.10862264604593082 0.3091151240882065 25.75631855374079 0.03737717108616877 0.03496759233247034 349.88922774488066 -2.5439305717970746 -0.15769307174417835 DKPELEVVLTEDALK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKPELEVVLTEDALK 15 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A0A0MRE9;A0A6I8PUA5;H7BYL6 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 0 70.783 0.041643 31049000.0 160310.0 275100.0 257030.0 288110.0 273990.0 260690.0 261600.0 228500.0 172840.0 263760.0 False True 159446.90877211542 284256.5371985386 293217.58985519025 324584.69645941607 308881.00243403716 242669.11389825225 248945.4085909533 245551.83029948932 130245.89793734268 246926.610983703 0.6457259026757501 1.1511782228173835 1.18746857087243 1.3144986486727364 1.2509020441479397 0.9827580467391109 1.0081756988410762 0.9944324320544601 0.5274680497920852 1.0 17.913722796804272 1.4645816585940719 4.140127156374805 0.7577231522190558 1.0921873129328272 0.25741605269939527 0.20549403940516286 0.24504455435965206 8.27930221192709 0.13910917851963644 0.05267680859544658 29.146181068329923 -1.4645816585940719 0.3344641607137714 DKPGLER ddPTM_BT-474_Trastuzumab_2h_R1 1 DKPGLER 7 1 G5E9B7;A0A0D9SFG6;Q99418-2;Q99418;M0R2J0;F8W8E2;A0A286YF81 G5E9B7 CYTH2 Cytohesin-2 0 73.931 0.055810000000000005 0.0 104600.0 99812.0 90652.0 90541.0 103540.0 97564.0 101080.0 77983.0 117590.0 105030.0 False True 104036.8452221526 103134.18208237183 103415.01363869089 102003.48131662214 116725.20527033899 90819.6303209524 96190.37423690205 83802.48744965026 88611.5201252727 98326.89547929313 1.0580710874173989 1.0488908612404129 1.0517469623605606 1.03739145652273 1.1871137057807384 0.9236499319769361 0.9782712427563522 0.8522844847399703 0.9011931038129195 1.0 16.585298472283547 2.6493764520325813 10.536141102668696 0.9199794334743634 1.071491349053846 0.6324053229251502 0.055097928068707294 0.34805458947994217 39.6103217873951 0.017732790338213816 0.01671380756539037 446.0427164286766 -2.6493764520325813 0.15151191557948263 DKPHNIFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKPHNIFK 8 1 P25685;P25685-2;M0R080 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ; 100.25 0.0037495 2192900000.0 3437320.0 3462470.0 3348520.0 2871360.0 2714710.0 3594300.0 3852800.0 3276010.0 5364100.0 3765700.0 False True 3418813.8510421524 3577716.220842687 3819962.5101423995 3234873.8815928283 3060412.2271531997 3345834.501072108 3666425.344874711 3520482.501441707 4042189.430257463 3525369.802022033 0.9697745323288457 1.0148484901614094 1.083563632941826 0.9175984544195659 0.8681109781441512 0.9490733423634168 1.040011559289971 0.9986136771871357 1.1466001177916143 1.0 21.749343169689602 1.7412235386559953 1.8688575255745805 1.0640960471594245 0.9707718130966123 0.2363595360144921 0.06653764876524915 0.5003007784372772 3.507373332291859 0.050323246058973335 0.02054131753896677 55.10912793438327 -1.7412235386559953 -0.0933242340628122 DKPHVNVGTIGHVDHGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKPHVNVGTIGHVDHGK 17 1 P49411;H3BNU3 P49411 TUFM Elongation factor Tu, mitochondrial 0 ;; 203.89 3.1184e-12 2260090000.0 1362550.0 1168950.0 1286120.0 940630.0 1369160.0 2625720.0 1278000.0 290314.0 2072910.0 1242510.0 False True 1355214.1821935377 1207857.794104803 1467194.516844559 1059713.6615550334 1543514.4103528836 2444210.1566800373 1216178.257565897 311978.7048646216 1562069.1060709157 1163211.9480336697 1.1650621234457181 1.0383815229430922 1.2613303356492778 0.9110237075422126 1.326941674698312 2.1012595003101606 1.045534530161733 0.2682045223073923 1.3428929342683307 1.0 20.149682562539226 1.9974605179539937 24.9999500464995 0.7560087376184452 1.295686137559341 0.18332660437471882 0.390417328535246 130.58752539110066 1285576.1879546456 0.15123375792388205 0.1097713341532689 99.41696891120216 -1.9974605179539937 0.5396773999408957 DKPLKDVIIADCGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKPLKDVIIADCGK 14 2 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 ; 159.34 2.7713e-06 3824100000.0 6602300.0 5758000.0 5044700.0 4153600.0 4264900.0 6141000.0 5828100.0 6382300.0 10867100.0 6814300.0 False True 6566753.950384495 5949651.5492155 5754949.910681554 4679445.334121794 4808009.734957203 5716487.124359081 5546172.537495938 6858579.634662716 8189048.816679572 6379405.5399842635 1.029367690958975 0.9326341634694346 0.9021138215169419 0.7335237280013613 0.7536767657773116 0.8960846098480175 0.8693870459769547 1.0751126561362383 1.2836695778866838 1.0 22.60499056314598 1.6429090387392773 3.660989380771574 1.1520382865797307 0.8673550792256257 0.5509588861624319 0.10231629713558144 0.1324999621233294 4.185476918039413 0.062425322874093 0.027807906593862692 43.94495648259007 -1.6429090387392773 -0.284683207354105 DKPSGDTAAVFEEGGDVDDLLDMI ddPTM_BT-474_Trastuzumab_2h_R1 9 DKPSGDTAAVFEEGGDVDDLLDMI 24 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;;;;;; 222.57 7.6175e-33 273037000.0 1040066.0 996875.0 922904.0 872433.0 899196.0 1144057.0 1107512.0 1039728.0 1439991.0 1170096.0 False True 1034466.400218196 1030055.3817513372 1052840.8611746267 982882.9283474294 1013703.280647748 1064971.0324104994 1053937.4134533033 1117317.7829918065 1085124.5129408238 1095419.4715104138 0.9443564106011618 0.9403296258108781 0.9611303145113189 0.8972662563613061 0.9254019186367102 0.9722038544212377 0.9621313486422574 1.019990799918134 0.9906018116006329 1.0 20.063051999500946 2.2064860232869163 1.645963259933163 1.0041072814912908 0.9347030148874723 0.6861898146513399 0.019434819525958425 0.20992464142815248 1.1193384887716291 0.010922764872879747 0.006493477995934637 160.8740603646676 -2.2064860232869163 -0.06940426660381849 DKPSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKPSLR 6 1 P13489 P13489 RNH1 Ribonuclease inhibitor 0 ;;; 108.98 0.027312 3055550000.0 5139040.0 5287420.0 5046630.0 4749290.0 5072270.0 5550190.0 5857890.0 5468400.0 7500550.0 5941350.0 False True 5111371.979641026 5463408.578387119 5757151.637905687 5350549.627044319 5718193.518800301 5166518.429041928 5574521.481387087 5876479.775972552 5652139.954720758 5562167.956354351 0.9189531887115482 0.9822444451979544 1.0350553386883226 0.9619539843150055 1.0280512137839533 0.9288677489753929 1.0022209910110003 1.056508868859151 1.0161757068597004 1.0 22.40721587857926 1.9965029743254608 24.988062583964272 1.0302214537643197 0.9793238114330205 0.25001080863640435 0.03712502883284311 177.28502441943047 1266798.4557761138 0.01372223998872611 0.009931330243066642 99.19801329281232 -1.9965029743254608 -0.05089764233129923 DKPSVEPVEEYDYEDLKESSNS(ph)VSNHQLSGFDQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQAR 35 2 Q9Y450;E9PN23;G5E991;E9PLR4;E9PMN1;Q9Y450-2 Q9Y450;Q9Y450-2 HBS1L HBS1-like protein 1 DKPSVEPVEEYDYEDLKES(0.139)S(0.139)NS(0.722)VSNHQLSGFDQAR 207.16 4.1962e-28 271040000.0 91043.0 53012.0 65268.0 61181.0 64002.0 100650.0 94308.0 90619.0 191190.0 97839.0 True False 90552.83460382832 54776.47237356926 74457.1670803742 68926.50832697072 72152.27533042528 93692.30240461491 89745.96174845425 97381.44993395828 144073.78631474508 91594.83125581796 0.98862384877287 0.5980301685428341 0.812897038615864 0.7525152607625184 0.7877330449892858 1.0228994488011978 0.9798146960694765 1.0631762578608688 1.5729466863949677 1.0 16.482978568133742 2.105013118500037 1.079650203995079 1.2429631096789133 0.7755754533235278 0.5236191639677983 0.17164555412355614 0.38450385510812646 0.8362448696662268 0.12190019737281113 0.06152562789451699 127.35415496208816 -2.105013118500037 -0.4673876563553855 DKPTYDEIFYTLS(ph)PVNGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKPTYDEIFYTLSPVNGK 18 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 1 DKPTYDEIFYT(0.004)LS(0.996)PVNGK;DKPTYDEIFYT(0.003)LS(0.997)PVNGK;DKPTYDEIFYTLS(1)PVNGK 287.67 2.741e-40 1842900000.0 3109130.0 2664010.0 2393170.0 2212420.0 2273200.0 3389300.0 3261150.0 3033510.0 4787600.0 3586300.0 True False 3092390.789536819 2752679.962421951 2730107.534193464 2492512.145155465 2562678.54568799 3155005.6685540145 3103395.7156972047 3259885.9200516585 3607760.1305532404 3357419.2636140967 0.9210618474286146 0.8198797190014411 0.8131565705185827 0.742389302452622 0.7632882117109772 0.9397115524850496 0.9243396406669068 0.9709499064893526 1.0745634808414317 1.0 21.67892127668083 2.1812489012500746 1.3029438694404372 1.0185396230734651 0.8117339610275351 0.7031524291743805 0.055966638020376214 0.2590087697134227 0.8427229432065815 0.03796569218340557 0.0207312335126256 151.7920062959592 -2.1812489012500746 -0.20680566204592998 DKPTYDEIFYTLSPVNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKPTYDEIFYTLSPVNGK 18 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 0 ; 188.41 3.4625e-14 1164350000.0 1526760.0 1386910.0 1355370.0 1286360.0 1282980.0 1830140.0 1783560.0 1671360.0 2406330.0 1780830.0 False True 1518540.0937989817 1433072.4609452006 1546194.314912769 1449213.0441065382 1446359.8981817623 1703626.7294861597 1697282.388939149 1796085.3701941117 1813322.214670015 1667175.9047547295 0.9108457538692567 0.8595808377856987 0.9274332183563084 0.8692622296024262 0.867550864942801 1.0218638145066 1.018058372903877 1.0773220540626438 1.087661001756612 1.0 20.66897490132023 2.6441716865697598 3.7568661659858087 1.050656284786742 0.8864668122100299 0.8601655829288819 0.03107205449550172 0.08120085433472292 2.1205657773464712 0.010478432771567278 0.009883204458671392 440.7290593782933 -2.6441716865697598 -0.16418947257671213 DKQDEEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 DKQDEEQR 8 1 P27797;K7EL50 P27797 CALR Calreticulin 0 ;;;; 128.27 0.0010404 6668497000.0 11436646.0 9689669.0 8606996.0 7054478.0 7920088.0 6722605.0 11396400.0 10342403.0 16327610.0 10802580.0 False True 11375072.368666815 10012183.775136398 9818786.223449653 7947574.191488083 8928664.26076056 6257887.139659986 10845112.593524242 11114205.629518295 12303889.294264833 10113150.095845971 1.124780336577738 0.9900163332144111 0.9708929592059323 0.7858653452352685 0.8828766681143253 0.6187871316406591 1.0723772999254633 1.098985531133718 1.2166228304392237 1.0 23.269729109502894 2.0277775993902387 24.99301163013535 1.1085714576269023 0.8933529537154784 0.3534829622336241 0.13398484044230177 231.94139346465795 208689.27774252367 0.05201839309642782 0.03841743333772946 106.60500611019873 -2.0277775993902387 -0.21521850391142394 DKQFVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKQFVAK 7 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 83.005 0.020932 1147600000.0 1120100.0 1114700.0 1212500.0 978330.0 863940.0 1122800.0 1295100.0 1123600.0 1799200.0 1249200.0 False True 1114069.50605481 1151802.1156496196 1383209.460761071 1102186.4776895645 973957.6380264321 1045183.4787869035 1232451.0652375533 1207448.7375251937 1355811.2680448196 1169474.986506073 0.9526236293289243 0.9848882010642631 1.182761048095224 0.9424626352911233 0.8328161348163853 0.8937202512637716 1.053849872342826 1.0324707680431637 1.1593332766316322 1.0 20.15742957404182 2.106990123396462 9.868119324205532 1.0614391911685026 0.9687225029052744 0.20744403235462416 0.0923681538929705 0.5695277470783555 48.53318278257742 0.03762804630383792 0.027784076862274392 127.93522091568717 -2.106990123396462 -0.09271668826322821 DKQLNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKQLNEK 7 1 Q9BQ69 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 0 ; 92.838 0.014023 161544000.0 360100.0 313560.0 317160.0 276740.0 295980.0 350560.0 390710.0 375460.0 551420.0 433790.0 False True 358161.26161087153 323996.6550489771 361813.3711958609 311775.2556252083 333671.2985890957 326326.6123294769 371809.86464285664 403478.73174724873 415529.92964944185 406105.1508136963 0.8819421789978247 0.7978146901111651 0.8909351936829912 0.7677205152422149 0.8216376914218698 0.8035520152247013 0.9155507234958148 0.9935326625107188 1.023207730354716 1.0 18.6314938001631 1.9344862209977678 2.387230797319681 1.0088550046492357 0.8258059780829634 0.8299578966718459 0.03615575050619511 0.10760692945692935 1.1217078558908689 0.019349928301389912 0.009994974274947757 85.99757817247794 -1.9344862209977678 -0.1830490265662723 DKQNKPTGFALGSIEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKQNKPTGFALGSIEGR 17 2 P78406;E9PQ57 P78406 RAE1 mRNA export factor 0 194.92 2.6644000000000006e-11 1567100000.0 1570700.0 1392600.0 1327900.0 1370400.0 1395300.0 1746300.0 1864800.0 1675500.0 2238200.0 1774800.0 False True 1562243.5257211756 1438951.849155523 1514856.7776862888 1543892.4994897218 1572983.1844089653 1625582.3913480302 1774592.4997722087 1800534.3180166087 1686625.6003434404 1661530.7445172726 0.9402435259631966 0.8660398574650415 0.9117235914442274 0.9291988755454968 0.9467072394534396 0.9783643165870599 1.068046742817139 1.083659946683515 1.0151034555989866 1.0 20.66408155784147 2.627799009627911 1.689898902992068 1.0532901014597087 0.9094718097508381 0.7727299073143825 0.03114458045032329 0.15197473345345064 0.8695931658585107 0.012959940650257103 0.011550755777028 424.42309656724046 -2.627799009627911 -0.14381829170887062 DKQPYEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKQPYEQK 8 1 P26583 P26583 HMGB2 High mobility group protein B2 0 ; 161.63 0.00031591 17985800000.0 12811400.0 10362200.0 9722000.0 8991600.0 8771800.0 11132700.0 13506300.0 11921500.0 18226900.0 12668600.0 False True 12742424.845880346 10707099.56291782 11090773.09486114 10129935.638070479 9888836.735468024 10363122.652556961 12852948.669923535 12811142.866150381 13735124.722946938 11860079.101865865 1.0743962781728553 0.9027848356621284 0.9351348333854118 0.8541204110920985 0.8337918027808332 0.8737819169289185 1.0837152568317583 1.080190339045453 1.1580972272593093 1.0 23.499610296312067 2.231566815670342 24.90186699338795 1.0863101871145022 0.9067210016804226 0.5709699173388415 0.07124277668118693 107.88651068343412 384133.2297088849 0.026662148989688595 0.02011619286469055 170.43815161396077 -2.231566815670342 -0.17958918543407965 DKQS(ph)PSQANGCSDHRPIDILEMLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DKQSPSQANGCSDHRPIDILEMLSR 25 2 Q9NPI6-2;Q9NPI6;A0A087WVE6;A0A087WT55 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 DKQS(0.97)PS(0.03)QANGCSDHRPIDILEMLSR;DKQS(0.971)PS(0.029)QANGCSDHRPIDILEMLSR;DKQS(0.964)PS(0.036)QANGCSDHRPIDILEMLSR 115.77 0.0007582000000000001 730580000.0 326047.0 360849.0 350873.0 358631.0 401769.0 494511.0 445784.0 401275.0 533780.0 459659.0 True False 324291.59917922714 372859.64082717354 400272.86855721206 404033.64782873506 452931.9006785679 460326.61852368177 424219.72485974635 431220.1781331626 402237.07128555124 430323.1690861314 0.7536001370038212 0.8664642473678748 0.9301680627777107 0.9389074929122992 1.052538959592741 1.0697230630209107 0.9858166032766797 1.0020845009320232 0.9347325456348864 1.0 18.71506099314693 4.5382950915308555 1.011994482303702 1.0055528724059826 0.6781196483437953 0.8076156595888777 0.03862021811063162 0.6022643900317947 0.6261348101016838 0.012895217223801594 0.1992483516153974 34537.83350038392 -4.5382950915308555 -0.3274332240621872 DKQVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKQVYR 6 1 P63092-4;P63092;P63092-3;Q5JWD1;A2A2R6;P63092-2 P63092-4;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 0 ; 96.964 0.037948 151882000.0 183630.0 211467.0 220016.0 181040.0 224170.0 216320.0 234490.0 204118.0 319490.0 252040.0 False True 182641.35648321075 218505.551260499 250992.34038664564 203959.64543755053 252716.72074031192 201366.30756250696 223146.82286121068 219350.32165020212 240755.97044666516 235954.59141769996 0.774052987847517 0.926049160339026 1.0637315378293488 0.8644021047104348 1.0710396403896998 0.8534112701627284 0.9457193501531985 0.9296293847568999 1.020348741679985 1.0 17.84814971944875 4.705284853825091 4.062292581739915 0.9608805542315533 0.7632970827097113 0.3992659995584885 0.0707773936950231 0.19278583975352975 6.506741325287937 0.015639364590212815 0.10374536557427284 50732.33526459529 -4.705284853825091 -0.19758347152184197 DKRPLS(ph)GPDVGTPQPAGLASGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKRPLSGPDVGTPQPAGLASGAK 23 2 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 DKRPLS(1)GPDVGTPQPAGLASGAK 102.46 0.0014395 1478600000.0 763250.0 568670.0 539680.0 546550.0 617760.0 935060.0 877690.0 731930.0 1143200.0 843010.0 True False 759140.7468050465 587597.8371817255 615662.2530173486 615743.173960966 696428.0742496098 870421.5030944786 835232.7815986009 786550.3332652324 861473.6780951755 789208.3800628278 0.9619015281421774 0.7445407981285597 0.780101008263922 0.7802035425826922 0.8824387726270319 1.1029045371074058 1.0583171728765843 0.9966320089031697 1.0915668153784617 1.0 19.590046749569364 2.908664168924322 4.172242263005646 1.0451216737366413 0.8104703545083388 0.7571748003719942 0.06299330983980928 0.10795472538586616 3.3468673365563557 0.01924492288107542 0.02082669212058143 810.3342005874115 -2.908664168924322 -0.2346513192283025 DKS(ph)FDDEESVDGNRPSSAASAFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DKSFDDEESVDGNRPSSAASAFK 23 2 E7ERI8;E7EW49;O75122-3 E7ERI8 CLASP2 CLIP-associating protein 2 1 DKS(0.999)FDDEES(0.001)VDGNRPSSAASAFK;DKS(1)FDDEESVDGNRPSSAASAFK;DKS(1)FDDEESVDGNRPSSAASAFK 116.28 0.0002562 996610000.0 827830.0 452433.0 400938.0 431132.0 446780.0 642090.0 491280.0 518180.0 1029290.0 675820.0 True False 823373.0552605599 467491.9589034763 457386.58538443106 485713.26699503954 503674.7847274686 597703.8296172798 467514.9095281481 556849.222864724 775635.2712793765 632688.5890013878 1.301387553962592 0.7388974086625274 0.7229252958495 0.7676972138246895 0.7960864056714697 0.9447046145729818 0.738933683419289 0.8801316043073167 1.2259352938601444 1.0 19.27113605047044 1.3364886557672409 6.738498729916599 1.1100068886861298 0.8438974893495579 0.25579062317449075 0.1703497498496969 0.24874669151920378 14.049959429547075 0.11134479183601553 0.04013898844334339 21.70144516350174 -1.3364886557672409 -0.26610939933657196 DKS(ph)HSHT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSHSHTPSR 10 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 DKS(1)HS(0.157)HT(0.798)PS(0.045)R 82.65100000000002 0.039811 180840000.0 727160.0 612300.0 424480.0 452080.0 526810.0 516280.0 560400.0 177540.0 779260.0 446510.0 True False 723245.0513550717 632680.0353568338 484243.09435369907 509313.28164719325 593896.1308524954 480590.7787923963 533291.3110641066 190788.93632985276 587221.8145490256 418013.3495235563 1.7301960623492354 1.5135402639125055 1.1584393056002402 1.2184139148371669 1.420758766506876 1.1497019876043781 1.2757757896295465 0.4564182855578904 1.4047920125477569 1.0 18.673189490867134 7.999999994764605 0.2724155637947298 0.9164555411394307 6.759684977455012 0.3858941286236024 0.2554480548045618 48.29560079371794 0.6781250472447102 0.30097317259944634 133.09344873426875 99999998.7945057 -7.999999994764605 5.843229436315581 DKS(ph)HSHTPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSHSHTPSR 10 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 DKS(0.997)HS(0.005)HT(0.308)PS(0.691)R 118.19 0.00048807 135420000.0 509750.0 431270.0 340490.0 360450.0 379680.0 370810.0 398630.0 126770.0 597140.0 325420.0 True False 507005.5626385491 445624.56124177977 388428.03240786603 406082.93304222915 428029.9974603275 345176.77749284945 379346.7439855189 136230.2211250165 449982.84826605354 304651.4169939211 1.6642153436911986 1.4627358889017463 1.2749917142700065 1.332942866470672 1.4049827888011046 1.133022064688893 1.2451829298174188 0.4471675282827744 1.4770417046017952 1.0 18.216799925067264 2.4205975387780847 1.6526599885596636 0.92580064156239 1.422590399649048 0.3156611281409252 0.26424273823450867 0.37725079576632714 2.0924052832957902 0.1239132134392109 0.09135616607027035 263.3889425998258 -2.4205975387780847 0.49678975808665815 DKS(ph)HSHTPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSHSHTPSR 10 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DKS(0.878)HS(0.122)HTPSR 73.881 0.026367 13910000.0 16005.0 14486.0 14195.0 12055.0 12703.0 12943.0 13567.0 5035.7 21129.0 12164.0 True False 15918.830858322663 14968.15775302808 16193.532614848176 13581.161763973003 14320.651753420107 12048.280874544776 12910.712379027007 5411.489504766472 15922.041064094612 11387.683105875662 1.3978990028365894 1.3144164281586843 1.4220217110267899 1.192618519298766 1.2575562228308874 1.058009848230521 1.1337435595099685 0.4752054877584647 1.3981809044088498 1.0 13.475186631277321 2.6756700170267766 1.2842878415821977 0.9061108608630528 1.3480292295493161 0.30691730218197766 0.22366580982529874 0.4385945798805515 1.4797588887265711 0.10535935030533435 0.093473755613155 473.88178647904056 -2.6756700170267766 0.44191836868626333 DKS(ph)HSHTPSRR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKSHSHTPSRR 11 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DKS(0.611)HS(0.325)HT(0.063)PS(0.001)RR;DKS(0.694)HS(0.292)HT(0.014)PSRR 68.809 0.026698000000000003 347920000.0 9068.4 16570.8 13457.7 11796.5 16313.0 13277.1 13724.3 6637.799999999999 20135.5 9904.0 True False 9019.576741993953 17122.349060739867 15352.42718357466 13289.935690477603 18390.363855273714 12359.285327931588 13060.403177082648 7133.146342065433 15173.375826876658 9271.918240758998 0.9727843265856507 1.8466889608097141 1.6557983779544105 1.4333534167779387 1.9834475863290486 1.332980404594234 1.408597750535549 0.7693280027759946 1.6364872330490445 1.0 13.178652129460787 2.197216477063282 2.520669019668468 1.1162691661943973 1.5858925727054516 0.21438235818252405 0.3324800502003777 0.3559083800652504 4.593052691437925 0.1406443242772217 0.09527742675190665 157.47676225885706 -2.197216477063282 0.4696234065110543 DKS(ph)PAPEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSPAPEEK 9 1 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 DKS(1)PAPEEK 55.467 0.077698 300660000.0 665330.0 407980.0 363050.0 359350.0 408130.0 518680.0 567390.0 580580.0 1035400.0 599990.0 True False 661747.9372051121 421559.36767088185 414164.28431283013 404843.67315501405 460102.93632396596 482824.87244138843 539943.1780597134 623905.8277255036 780239.5436491827 561698.1245227178 1.1781202541265523 0.750508768440497 0.7373431853003798 0.7207495547524126 0.8191284895510759 0.8595807095700222 0.9612693268622006 1.1107493518082234 1.3890727235597633 1.0 19.099435460286767 1.8336794395183484 2.0136874287985385 1.2026095382737954 0.8282292212969223 0.4758629085771261 0.15118721584198658 0.2491817537156461 1.9229414253579942 0.09540475033675459 0.04311686356376134 68.18352336445696 -1.8336794395183484 -0.374380316976873 DKS(ph)PGRPLER ddPTM_BT-474_Trastuzumab_2h_R1 2 DKSPGRPLER 10 2 O14578-4;H7BYJ3;O14578;O14578-3 O14578-4 CIT Citron Rho-interacting kinase 1 DKS(1)PGRPLER;DKS(1)PGRPLER 84.75299999999999 0.0076735 418170000.0 297479.0 346592.0 314772.0 336394.0 333603.0 390577.0 367599.0 303229.0 351739.0 415325.0 True False 295877.40611702413 358128.1052007116 359089.16155272914 378981.44590874616 376085.3646301039 363577.3313093626 349816.8320054506 325857.487745663 265057.6365111258 388818.60292237793 0.7609651490262975 0.9210673113606314 0.9235390458527422 0.9746998807678047 0.9672514684313702 0.9350821400434527 0.8996916026553559 0.8380707232022943 0.6816999868806194 1.0 18.568737720391344 -1.2697660952664345 6.184569642511696 1.000003492979061 0.8853487773085387 0.14001993506311916 0.08904180817132692 4.381947643704427e-06 5.173850330984992e-07 0.08809380631507392 0.020763276593063974 0.05373211118406849 1.2697660952664345 -0.11465471567052243 DKS(ph)PVREPIDNLTPEER ddPTM_BT-474_Trastuzumab_2h_R1 12 DKSPVREPIDNLTPEER 17 2 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;H0Y4X3;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 1 DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER 275.54 5.2435e-36 95307190000.0 19704708.0 15322939.0 14073511.0 13189563.0 13842540.0 18988169.0 18109536.0 17844672.0 26493285.0 18486662.0 True False 19598620.04152687 15832953.76170279 16054939.01964947 14859360.323443623 15605305.417837359 17675561.570371933 17233508.558534343 19176332.03804839 19964369.903580945 17306827.40393237 1.1324213031138086 0.9148386005227802 0.9276650563928053 0.85858372402023 0.9016849277812524 1.0213057054209589 0.9957635883407858 1.1080212213644218 1.153554573442198 1.0 24.0448379459287 2.1003921434819675 1.7526026939866048 1.0959295492328063 0.9432498374146742 0.333693509450517 0.07972177183098704 0.37113911528050586 2.182129999629457 0.04596663066865495 0.02512689493112064 126.00626639687994 -2.1003921434819675 -0.1526797118181321 DKSDS(ph)PAIQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKSDSPAIQLR 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 DKS(0.206)DS(0.794)PAIQLR;DKS(0.029)DS(0.971)PAIQLR 167.71 1.146e-05 549710000.0 1123760.0 953640.0 843060.0 811410.0 845620.0 1178800.0 1118710.0 1069590.0 1670550.0 1139120.0 True False 1117709.8010214746 985381.3309124467 961755.519991116 914134.4228042574 953304.6946175784 1097312.3305967238 1064593.7234127894 1149408.2370679684 1258865.336723141 1066420.3863503034 1.0480949307868195 0.924008339980068 0.9018540270808303 0.8571989381530611 0.8939295486277696 1.0289678860624039 0.9982871080102232 1.0778190775231529 1.180458806710792 1.0 20.02434483457615 2.224000386082596 1.4725679525555193 1.0906062498225242 0.9227621008699992 0.5023124105887802 0.06618943154607271 0.32310440518463923 1.371211852373356 0.039049903963993514 0.022854136843401648 167.49443650312668 -2.224000386082596 -0.16784414895252497 DKSDSPAIQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKSDSPAIQLR 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 0 ; 81.565 0.019449 741520000.0 689760.0 667860.0 657930.0 622350.0 596150.0 769560.0 717040.0 700670.0 1020860.0 772970.0 False True 686046.4087995398 690089.316370104 750560.8251699223 701139.4461890165 672066.1688421156 716362.1285493847 682354.035841197 752957.5533301679 769282.7318231626 723638.3928270896 0.9480514240259053 0.9536383409316951 1.0372042619762791 0.9689085780120442 0.9287320511236375 0.9899448891188894 0.9429489128892069 1.0405163142167388 1.063076170983343 1.0 19.464909426995025 1.6737560167816 6.676113419996195 1.0390697932307003 0.968849397349111 0.4801499203599152 0.031954288806948235 0.10860840989398768 9.72983400177229 0.016207741004260718 0.008238289969260602 47.17979144461482 -1.6737560167816 -0.07022039588158924 DKSEEVQK ddPTM_BT-474_Trastuzumab_2h_R1 4 DKSEEVQK 8 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 129.85 0.00097858 1988650000.0 2528110.0 1882150.0 1750650.0 1669020.0 1666670.0 2051260.0 2708120.0 2507770.0 4080930.0 2867810.0 False True 2514498.936659424 1944796.2249662995 1997126.3030774186 1880317.7608715228 1878910.5453729597 1909461.2243466524 2577117.8895769585 2694912.531598034 3075239.4831603784 2684783.910544336 0.9365740485794305 0.7243771900331432 0.7438685457082109 0.700360931651401 0.6998367868615591 0.7112159816093028 0.9598976958463863 1.003772601963949 1.145432774340814 1.0 21.356374544413203 2.0723154854665453 2.798066420814753 1.0458398800244184 0.7457323928644709 0.7593578685487115 0.07641847275996937 0.1291429147383073 1.9895069283550404 0.03603980004041041 0.022378296101732153 118.11783699930858 -2.0723154854665453 -0.3001074871599475 DKSHS(ph)HTPSRR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSHSHTPSRR 11 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DKS(0.007)HS(0.887)HT(0.106)PSRR 79.633 0.012637 436780000.0 4580.6 5082.5 3055.7 6365.2 6807.4 4765.1 6413.8 1376.3 6814.5 5305.0 True False 4555.938558552506 5251.667940063871 3485.9159993794688 7171.033667361339 7674.282039379044 4435.699852838855 6103.539990904652 1479.006494709792 5135.157784621739 4966.4303581609975 0.9173467118221122 1.0574331182222585 0.7018956771741095 1.443900981230446 1.5452309779736302 0.8931364245448384 1.2289591418261043 0.29780071158743643 1.0339735814846338 1.0 12.27799356604865 1.7700263215436935 24.999999999926413 0.7056679729812212 1.1155889197208309 0.19187829510066945 0.3048466821297294 36.4311475987604 28960.015177194073 0.14100848949924796 0.07821724671394843 58.887934483437654 -1.7700263215436935 0.40992094673960966 DKSHSHT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSHSHTPSR 10 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DKSHSHT(1)PSR 142.1 5.3269e-05 25508000.0 24758.0 43201.0 35234.0 32271.0 42185.0 39558.0 46398.0 10303.0 43104.0 30146.0 True False 24624.705678872382 44638.91916944401 40194.64094058191 36356.505291179805 47557.00969991554 36823.448569515735 44153.55148242759 11071.862177573921 32481.596764008413 28222.0564707109 0.8725340658441428 1.5817032757967397 1.424227925498493 1.288230194313122 1.685100791619159 1.3047755257570062 1.5645051071402445 0.39231238124211104 1.1509294794912661 1.0 14.784535496896387 1.753595617406728 24.999987613184107 0.8000401386829867 1.4018188704650565 0.44018759224604864 0.2777386579776505 3.8776586480917636 6456.006805151047 0.11871528728087363 0.06583421305118554 56.70163962025513 -1.753595617406728 0.6017787317820698 DKSHSHT(ph)PSRR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSHSHTPSRR 11 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DKSHS(0.338)HT(0.661)PSRR 121.42 0.00041405 390270000.0 215640.0 389220.0 353120.0 345790.0 441350.0 368740.0 397030.0 113950.0 475860.0 278850.0 True False 214479.0181998562 402174.9524115413 402836.226625938 389566.9785453522 497553.3064136007 343249.8717205934 377824.1420981127 122453.5276263755 358590.67919731466 261053.55426450414 0.8215901093709768 1.5405840902822967 1.5431171881987753 1.4922875869011762 1.905943429176493 1.314863812858899 1.4473051062744562 0.4690743551505274 1.3736287950861767 1.0 17.993986275661886 1.7747933471170978 24.999999999999122 0.8955543598255801 1.461302919161899 0.3166957336955125 0.32616964500827983 41.20847725280261 28445.47265015664 0.14550635923807667 0.08075437011878901 59.53787735522074 -1.7747933471170978 0.5657485593363188 DKSTSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKSTSIR 7 1 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 0 63.565 0.071744 29598000.0 98054.0 135570.0 112390.0 127950.0 120810.0 90626.0 113100.0 109660.0 132190.0 123750.0 False True 97526.0881588236 140082.36549620455 128213.53508860753 144148.45688099106 136194.4374030293 84361.23793065721 107628.92091604293 117843.38604219709 99613.54575524954 115852.1690522947 0.8418149522500622 1.209147542442408 1.1066994786324027 1.2442447824686274 1.1755881527047825 0.7281800472167013 0.9290194719397972 1.017187567623387 0.8598332389468238 1.0 16.821925529875582 2.7676064471807647 24.96591253689591 0.9188421341778713 1.127365380670345 0.40043344977631423 0.1268214484781277 716.347460491777 615724.6165191521 0.038355815610623525 0.04067652802830413 585.6072532312028 -2.7676064471807647 0.20852324649247367 DKTEDDADREAQLLEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKTEDDADREAQLLEMR 17 2 Q9NQT8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 0 156.73 2.9399e-08 224910000.0 189200.0 170070.0 150620.0 162440.0 146790.0 195130.0 205290.0 171690.0 283540.0 205490.0 False True 188181.3682220961 175730.67714051408 171825.9867874906 183004.88734465165 165482.8364075051 181641.12238661214 195359.33841604315 184502.37962415494 213665.36624134553 192375.45227115985 0.9781984447623179 0.9134776556252905 0.89318041755814 0.9512902253594182 0.8602076535952794 0.9442011454277581 1.0155107427151224 0.9590744424298608 1.1106685583781075 1.0 17.553565192743864 1.97194054699459 1.3158274958610432 1.0350160064595257 0.9187580061350781 0.5106086721658312 0.0466988112789025 0.35766722416881375 1.1485034934821232 0.03285004616684038 0.01504890204565876 93.74336675934092 -1.97194054699459 -0.11625800032444766 DKTEFAQDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKTEFAQDK 9 1 Q9UJA5;Q9UJA5-2;Q9UJA5-3 Q9UJA5 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 0 ; 126.19 0.00043809 725080000.0 687780.0 590100.0 549290.0 533030.0 484660.0 682240.0 661260.0 644630.0 1112420.0 694830.0 False True 684077.0688995409 609741.1217770174 626625.2574857308 600511.5433472033 546378.5781951182 635078.3546202141 629272.3275414899 692735.5639648141 838278.9966643056 650485.3545261092 1.051641000277253 0.9373633357529244 0.963319547666433 0.9231745790567218 0.8399552340316183 0.9763146090858273 0.9673889245360898 1.0649518227347101 1.288697725216285 1.0 19.31115704991884 1.599020332928769 3.3568246378760396 1.1524205035339259 0.946376733642629 0.4746440979106523 0.08220343251019907 0.14740410946899796 3.8875035317590934 0.049438704656265035 0.020624337010118583 39.72101457373562 -1.599020332928769 -0.2060437698912969 DKTIIMWK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKTIIMWK 8 1 P63244;D6RHH4;D6RAC2;D6REE5;E9PD14;D6RAU2;D6RBD0;D6R909;D6RGK8 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 128.86 0.0010174 3048300000.0 3517300.0 3567600.0 3595900.0 3189500.0 3077600.0 3903400.0 4331600.0 3744500.0 5624800.0 4045400.0 False True 3498363.24760877 3686345.409340263 4102171.4638768923 3593290.372973197 3469514.117635655 3633567.145615245 4122063.9596810928 4023933.6041857274 4238643.408458483 3787219.1085588136 0.9237287696671016 0.9733647047273858 1.083161904893834 0.948793895988919 0.916111272726426 0.9594288160945516 1.0884144385429289 1.0625035121659472 1.1191967739282596 1.0 21.852707459700692 2.240550973377722 24.999566545578773 1.0722007358114307 0.9697818030330648 0.47736219181207584 0.05118150928245614 46.61657585254527 585526.5620176259 0.018812435208014677 0.015011652960224565 174.00069116039901 -2.240550973377722 -0.10241893277836589 DKTLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKTLKR 6 2 Q8IWF6 Q8IWF6 DENND6A Protein DENND6A 0 77.748 0.040271 291970000.0 584890.0 566600.0 530780.0 499770.0 464670.0 404300.0 563800.0 536600.0 814620.0 639390.0 False True 581741.0172273878 585458.9384830671 605509.2103775349 563040.8307574276 523842.9701851316 376351.6926198296 536526.8400748454 576643.8167995887 613867.816348751 598583.5827906805 0.9718626336446277 0.9780738318173973 1.0115700259512066 0.9406219063550865 0.8751375501194041 0.6287370777281016 0.8963273559449828 0.963347197247199 1.0255340005932225 1.0 19.191193185362252 3.45590739192621 4.282955186527002 0.8891294434179858 0.9855374653380009 0.12761980651354443 0.10268375793455628 0.4274969029226335 18.468142513072124 0.03119666076499186 0.04489579330671341 2856.981261531136 -3.45590739192621 0.09640802192001507 DKTYSYLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKTYSYLNK 9 1 G3V2V8;J3KMY5;H0YIZ1;G3V3E8;E7EMS2;G3V3D1;P61916-2;P61916 G3V2V8 NPC2 Epididymal secretory protein E1 0 ; 101.39 0.00366 1266280000.0 1238270.0 1305520.0 1214330.0 1013680.0 984420.0 1325870.0 1305990.0 1160150.0 1694990.0 1128730.0 False True 1231603.291904729 1348973.4439964949 1385297.108854425 1142011.7840650475 1109780.051885525 1234215.727662264 1242814.274333712 1246726.2841223322 1277282.4262023615 1056693.4850456296 1.1655255846037005 1.2765986192658738 1.3109734548941652 1.0807408205187654 1.0502383781022395 1.1679978585360244 1.176135077884052 1.1798372013891019 1.2087539520953956 1.0 20.01112552434753 -4.999999999999999 0.2194340284340603 0.12536663174589324 1.2017803670652871 0.33991538159986945 0.07420303919723759 195.90578683713198 1.9598275443895004 76.16500471973713 0.1554522525032765 1.0000000000000021e-05 4.999999999999999 1.0764137353193939 DKVASGGGGVGDGVQEPTTGNWR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKVASGGGGVGDGVQEPTTGNWR 23 1 O00429-4;O00429-9 O00429-4 DNM1L Dynamin-1-like protein 0 55.881 0.027313 0.0 69242.0 63285.0 62647.0 58251.0 63146.0 82646.0 78829.0 72139.0 106730.0 75591.0 False True 68869.20876550941 65391.40296840961 71467.1530625146 65625.57062739038 71187.26880433485 76932.87654775775 75015.7401139766 77522.37849441955 80427.8216087281 70766.71766328887 0.9731864220860448 0.9240417688940267 1.0098978082120245 0.9273507772345709 1.0059427815070776 1.0871336002018313 1.0600426668212133 1.0954638148299376 1.1365204472448076 1.0 16.1107833846087 2.901130008497075 3.2970186801935117 1.0815833307917306 0.9598482037194148 0.6610966734504149 0.03949512121234176 0.13884096120742068 2.8577908119959115 0.011811077819853941 0.012874118051231575 796.3977208761042 -2.901130008497075 -0.12173512707231582 DKVNCSFYFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKVNCSFYFK 10 1 P0DN76;Q01081;Q8WU68-3;Q8WU68;A0A1B0GW87;M0QYK5;M0R2N4;Q01081-3;Q8WU68-2;Q01081-2 P0DN76;Q01081-2 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit 0 ; 134.49 0.00015438 3093800000.0 3128100.0 3293300.0 3486000.0 2608500.0 2193530.0 3241900.0 3508400.0 2964700.0 5649800.0 3355100.0 False True 3111258.6571645816 3402915.499658108 3976798.4991448205 2938735.832544472 2472863.043429078 3017795.0836117365 3338685.2886104775 3185940.9684415623 4257482.493441326 3140974.645554374 0.9905392460165664 1.0833947687143786 1.2661033430414481 0.935612720307646 0.7872916283896408 0.9607830129679711 1.0629456348321487 1.0143160413443109 1.3554654124531753 1.0 21.582780866697814 -0.5567720935819519 7.5226427235782225 0.9999999997658923 1.0425763737008922 0.007206608108558665 0.1538678302969304 0.0 0.0 0.15062841507307775 0.03550345791251843 0.2774775852652664 0.5567720935819519 0.04257637393499991 DKVQAGDVITIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKVQAGDVITIDK 13 1 Q9Y230;Q9Y230-2;M0R0Y3 Q9Y230 RUVBL2 RuvB-like 2 0 ; 148.33 3.9413e-05 500380000.0 1457470.0 1188640.0 1121090.0 1073950.0 1087420.0 1532820.0 1515680.0 1409200.0 2150100.0 1574320.0 False True 1449623.1434601387 1228203.163851948 1278929.7273110338 1209911.9598854268 1225896.4913566934 1426859.7612701638 1442360.7679401247 1514361.6597726052 1620236.664863924 1473845.5497568373 0.9835651664445471 0.833332342086037 0.867750170648504 0.8209218123873593 0.8317672713799273 0.9681202765822882 0.9786376653768727 1.0274900650359546 1.0993259538838647 1.0 20.49115391582309 2.3431243436889555 1.6958874430956534 1.0396136572020545 0.8637904797739249 0.6795316649527816 0.05166748748548258 0.20530500376562874 1.1965845217771014 0.02515315869067254 0.017321944457266317 220.3557277469374 -2.3431243436889555 -0.17582317742812958 DKVVALAEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DKVVALAEGR 10 1 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;F8W1U7;E5RHT6;E5RHC5;Q8N6T3-3;F8VWB3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 0 ;;;; 118.87 0.00070066 578910000.0 2155970.0 2397420.0 2447990.0 1963160.0 1586020.0 2018560.0 2430330.0 1775140.0 3196700.0 2182390.0 False True 2144362.497070787 2477216.6754290075 2792645.71368948 2211695.8547126697 1787990.2459229582 1879021.6983791345 2312765.6531378124 1907609.9607782767 2408916.1185854133 2043108.001761921 1.0495590518081017 1.2124746578706183 1.3668615223870584 1.0825153896932336 0.87513251594191 0.9196878954801788 1.131984041540313 0.9336804315450801 1.179044923962918 1.0 20.96233403844083 3.4853394336660073 24.71960741795232 1.0011709228414267 1.2123781235679092 0.3947549850122928 0.11234229546126377 311.03492219512185 935567.6977832713 0.03022795669053023 0.04292513885466867 3057.309696183932 -3.4853394336660073 0.21120720072648247 DKVVEDDEDDFPTTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKVVEDDEDDFPTTR 15 1 Q9Y5P4-3;Q9Y5P4;Q9Y5P4-2;A0A2R8Y7C5;A0A2R8YE18;A0A2R8Y7Q9;A0A2R8Y5S9;A0A2R8YEA4;A0A2R8YE59;A0A2U3TZL3;A0A2R8YEK8;A0A2R8Y5H3;A0A2R8YFI2 Q9Y5P4-3 COL4A3BP Collagen type IV alpha-3-binding protein 0 ; 104.44 0.0027249 0.0 783910.0 678440.0 535590.0 530980.0 574950.0 632930.0 680560.0 670380.0 904780.0 646180.0 False True 779689.5156605897 701021.4652743596 610996.416568266 598202.0135573946 648166.4745043595 589177.0388569601 647638.7128083305 720407.1597206651 681809.092430854 604940.2391774686 1.2888703134060415 1.1588276326724962 1.010011199451754 0.9888613367342932 1.0714553810896514 0.9739425495286254 1.0705829615317353 1.1908732682424892 1.1270685073915785 1.0 19.206433102938508 4.558291341327019 3.1999808258965374 1.0641498464408645 1.28774836303884 0.5597047199542653 0.06457772168106639 0.23763385898235667 4.217578844316947 0.018317626561919945 0.1025641217507138 36165.23915198108 -4.558291341327019 0.22359851659797547 DKVVHADNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKVVHADNAR 10 1 O60231;Q5SQH5;A0A140T8Y5 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 0 107.85 0.0013397 47009000.0 120710.0 129390.0 118240.0 113020.0 113220.0 125880.0 136970.0 122490.0 170680.0 132240.0 False True 120060.11077214181 133696.6679320933 134887.16423949623 127328.32041179831 127637.89589248382 117178.21188964666 130344.23782378781 131630.82579161684 128618.20099482559 123800.32998364013 0.9697882936823142 1.079937896367166 1.089554157548055 1.0284974234610231 1.0309980264943626 0.9465096894744257 1.0528585654094174 1.063251009177532 1.03891646340379 1.0 16.9176556344262 -1.4579794678541298 5.4207548859448185 0.9999579193990372 1.0364957538738127 0.047488300256781746 0.04281755994243364 2.1995801203435962e-05 2.1993274139132587e-06 0.04187766254545238 0.00985929410810614 0.034835378377307914 1.4579794678541298 0.03653783447477543 DKWLAPDGLIFPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKWLAPDGLIFPDR 14 1 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6;H0YDE4;E9PNR9 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ;;; 155.1 5.4154e-06 6771500000.0 1897560.0 2140170.0 1975560.0 1993050.0 1974750.0 2240130.0 2214690.0 2091900.0 2762010.0 2342490.0 False True 1887343.747798736 2211404.264689913 2253701.676124653 2245369.9256479777 2226222.707239733 2085275.0857988112 2107556.983762609 2248008.2004529648 2081349.644537835 2192990.2826934145 0.8606256775021887 1.0083967458231884 1.0276842966019317 1.0238850319437947 1.015153931510131 0.9508820455135313 0.9610425547230984 1.0250880809612972 0.9490920506868533 1.0 21.06446798865849 4.7414691711566785 24.484023482278936 0.9972224593848782 0.8606256103404534 0.6548544725954657 0.029397930198015995 126.5586587075998 1065288.2769588684 0.007232268374408685 0.050160185031867706 55140.305907555885 -4.7414691711566785 -0.13659684904442482 DKWLCPLSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKWLCPLSGK 10 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 70.488 0.049093 601410000.0 611790.0 435020.0 345590.0 416210.0 321570.0 503000.0 484200.0 506900.0 931550.0 668890.0 False True 608496.1906162594 449499.3777248572 394246.06807787117 468902.14332502737 362520.033405282 468228.7939346387 460777.3961763752 544727.4519860451 701981.984630476 626200.8675344591 0.9717268406415527 0.7178197939818756 0.6295840336825728 0.748804684942766 0.5789197240058646 0.7477293919732116 0.7358300188733277 0.8698925220765035 1.1210172662238396 1.0 19.25626598161476 1.4887133072438152 2.8100405397922095 1.0585904412766969 0.7234653050116445 0.6203270797167333 0.10126639881423187 0.1535415062612884 2.425604177519157 0.07608520506919283 0.026498169316877363 30.81153303260393 -1.4887133072438152 -0.33512513626505236 DKYAENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DKYAENLK 8 1 Q08379;Q08379-2;B7ZC06 Q08379 GOLGA2 Golgin subfamily A member 2 0 ; 123.63 0.0012217 984200000.0 1373370.0 1087900.0 1127920.0 893740.0 820490.0 1253210.0 1325540.0 1133000.0 1766100.0 1232570.0 False True 1365975.9285157523 1124110.0938505619 1286721.3319436107 1006887.3923627741 924974.5380747579 1166578.542439023 1261418.5661454618 1217550.2132574245 1330868.3195275443 1153906.3273437333 1.1837840699428337 0.9741779442688717 1.1151003347954722 0.8725902341489075 0.8016027957867505 1.0109820136998997 1.0931724146527728 1.0551551580969298 1.1533590621616345 1.0 20.138094681902192 -0.002432514126484403 8.210611772033571 0.9999999654818122 1.023107553307806 0.003417435166100047 0.11464822743010111 0.0 0.0 0.11427673166314964 0.026935283963616195 0.9944145859855597 0.002432514126484403 0.02310758782599376 DKYDDLEDDEDDDEEGER ddPTM_BT-474_Trastuzumab_2h_R1 1 DKYDDLEDDEDDDEEGER 18 1 Q9BZI1 Q9BZI1 IRX2 Iroquois-class homeodomain protein IRX-2 0 101.49 0.0010148 0.0 62551.0 54097.0 41640.0 43879.0 39384.0 60774.0 61316.0 62710.0 70941.0 59470.0 False True 62214.23236606943 55897.58594267293 47502.55005863178 49434.0769009848 44399.318952743255 56572.83642660777 58349.910830133435 67389.73863492763 53458.54111069788 55674.57368517147 1.1174622138622636 1.0040056392485832 0.8532180296026901 0.8879111886967394 0.7974792802871287 1.0161341646999544 1.0480531231382293 1.2104221761266296 0.9601966853485973 1.0 15.76473098551009 2.4103396860542796 3.5864833959203817 1.085678477394841 0.9275604825212248 0.21542032520061605 0.1033969518750679 0.28611361425941384 7.466647951263125 0.03932796210035156 0.032684063898372924 257.2407019816169 -2.4103396860542796 -0.1581179948736161 DKYENEDLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DKYENEDLIK 10 1 Q86WR0;Q0VGD4;G3V121;B7Z2L8 Q86WR0 CCDC25 Coiled-coil domain-containing protein 25 0 150.68 0.0059003 0.0 257570.0 215330.0 196670.0 171300.0 178880.0 257070.0 262400.0 222430.0 356870.0 236670.0 False True 256183.27173871745 222497.12888026598 224359.42651371524 192986.56243621523 201659.3076951734 239299.35597768857 249706.70953465678 239028.85607665408 268924.17031300307 221565.51797661904 1.1562416123151054 1.0042046745908597 1.0126098526639467 0.8710135232170033 0.9101565511491446 1.0800387991914018 1.127010700108161 1.0788179417966919 1.2137455898773093 1.0 17.757373848084868 2.554104631263436 6.866164953828952 1.1079936520570794 0.9863877919570934 0.291689648947544 0.08547140348904769 0.3170991455252502 24.05723674372407 0.02842432269464936 0.026657524875142995 358.1827209446369 -2.554104631263436 -0.12160586009998609 DKYGKPNKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DKYGKPNKR 9 3 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54;M0R0J3 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 52.725 0.064075 437550000.0 218480.0 203260.0 188000.0 152470.0 194080.0 185810.0 199170.0 180650.0 300460.0 220170.0 False True 217303.72795541005 210025.38622673525 214468.76587470633 171772.68636689868 218794.93759771477 172965.39204969213 189535.3861967133 194131.02032211307 226415.65895772955 206118.56210297975 1.054265689311582 1.0189542566370302 1.0405116535188845 0.8333683517599866 1.0615004071705183 0.8391548547834143 0.9195454512341239 0.9418415223812907 1.0984729208648811 1.0 17.653114907737383 DKYGPPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DKYGPPVR 8 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;; 128.36 0.0010368 3061570000.0 4645790.0 5536600.0 4943760.0 4865360.0 5066800.0 5379360.0 5282930.0 4920910.0 6050800.0 5355300.0 False True 4620777.582835789 5720882.384054617 5639798.436067751 5481314.077143399 5712026.946723525 5007497.50485136 5027374.493147576 5288133.292074659 4559661.416566029 5013520.169096998 0.9216633078127324 1.1410909283496558 1.124917871245655 1.0933064777379078 1.1393246170489304 0.9987987154648821 1.0027633925033304 1.0547745124613954 0.9094730374620763 1.0 22.257392495533946 2.7175429619490235 23.995938024889604 1.0021394482914288 1.0900124920524819 0.30390437102593004 0.06781225491063866 623.4487116407614 711792.2646784205 0.021399928912838626 0.02019771301353376 521.8467246128288 -2.7175429619490235 0.0878730437610531 DKYVGVSSDSVGGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DKYVGVSSDSVGGFR 15 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ; 170.11 1.0568e-06 1188040000.0 791730.0 894470.0 791350.0 791340.0 837760.0 967210.0 950770.0 941740.0 1269880.0 1033840.0 False True 787467.4136494715 924241.893231467 902765.2014624944 891523.5628620829 944443.7702074487 900349.049267439 904777.6228058892 1012017.4208588236 956935.089520208 967859.4460850459 0.813617531796323 0.9549340009750277 0.9327441139456197 0.9211291644342174 0.975806739323243 0.9302477264744548 0.934823363522131 1.0456243672078576 0.9887128687858278 1.0 19.8844380269376 7.942570980096567 0.2619925238009997 1.0083270692298012 4.876014690224008e-15 0.5954239995818114 0.037188977792336576 35.70821926319475 0.5090582698908093 0.046074629336523155 16.02819575016731 87613489.94157346 -7.942570980096567 -1.0083270692297963 DLAALGDKVNSLGETAER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLAALGDKVNSLGETAER 18 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 149.36 5.7205e-08 271560000.0 219350.0 285690.0 247680.0 263040.0 235340.0 306220.0 319940.0 244060.0 440000.0 354500.0 False True 218169.0439720761 295199.018946748 282551.1911268473 296340.83702990116 265309.15403053525 285051.7321643438 304463.2799105106 262272.99651156884 331567.89569793316 331875.5064972802 0.6573821800671633 0.8894872118234107 0.8513770543327603 0.8929277130378699 0.7994237261757957 0.8589116297640359 0.9174020798458826 0.7902752429056352 0.9990731138835954 1.0 18.340282632148124 3.8961477996311356 0.030542902593676338 1.6449798978861547 2.8552088642091927e-08 0.44001893838747574 0.07237217583920126 512.5504253124539 3.2902362786547177 74.64730477217483 103.62648806252163 7873.1368366668685 -3.8961477996311356 -1.644979869334066 DLADELALVDVIEDK ddPTM_BT-474_Trastuzumab_2h_R1 11 DLADELALVDVIEDK 15 0 F5GZQ4;P00338;P00338-3;P00338-4;P00338-2;P00338-5;F5GXY2;F5GYU2;F5GXH2;F5H5J4;F5H6W8 F5GZQ4;P00338 LDHA L-lactate dehydrogenase A chain 0 ;;;;;;;;;; 269.2 1.7459999999999999e-25 1612044800.0 1080470.0 826863.2 756759.7 601219.7 613056.3 1204063.0 1209344.9 882952.1 1461152.0 1016723.0 False True 1074652.869571502 854384.8417626409 863304.8878867701 677334.0523755549 691125.385935624 1120828.9588694288 1150844.267040848 948842.4692419169 1101070.6680336967 951834.8676796462 1.1290328880168656 0.8976187685217226 0.9069901904216938 0.7116087835978724 0.7260979917876178 1.1775455984311136 1.2090797533466502 0.9968561790082096 1.1567874905842155 1.0 19.860351778806137 2.7277769195865846 24.979167815155847 1.1070315127586523 0.8683479757530866 0.4656884463455505 0.12512592495544908 672.928850411082 1558758.191208991 0.042260785130470095 0.04021570468211896 534.2898447042636 -2.7277769195865846 -0.23868353700556566 DLADELALVDVIEDKLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLADELALVDVIEDKLK 17 1 F5GZQ4;P00338;P00338-3;P00338-4;P00338-2;P00338-5;F5GXY2;F5GYU2;F5GXH2;F5H5J4;F5H6W8 F5GZQ4;P00338 LDHA L-lactate dehydrogenase A chain 0 ; 215.8 5.0137e-15 1329460000.0 335080.0 285331.0 223570.0 275929.0 280610.0 402350.0 457820.0 293360.0 656600.0 463830.0 False True 333275.96651088743 294828.0698487682 255046.71269472365 310861.58310836257 316344.0201942228 374536.4915300234 435673.49755776074 315252.0128518957 494789.7279892336 434227.9722951589 0.7675138125011184 0.6789706989405186 0.5873567088427 0.7158948822787027 0.7285205937382437 0.8625342341497952 1.0033289547307636 0.7260057687799271 1.1394699548579725 1.0 18.72809313956919 2.739570262880609 2.1219189877162545 0.9262447125040876 0.6801770647276371 0.5808745222204933 0.1072962542082934 0.2584032960495499 2.294931539553085 0.038720957132132736 0.03835920361186798 548.9973686543229 -2.739570262880609 -0.24606764777645052 DLADIAAFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLADIAAFFR 10 0 O75962-5;O75962;O75962-2 O75962-5 TRIO Triple functional domain protein 0 ; 87.30799999999998 0.030175 40693000.0 74210.0 84566.0 90597.0 81188.0 85656.0 91469.0 92853.0 79935.0 101988.0 89963.0 False True 73810.46160550609 87380.72818877352 103352.27011675944 91466.39247560683 96563.7838771118 85145.96332486578 88361.34565709402 85900.15560170557 76854.4239691837 84221.48431880066 0.8763851908156107 1.0375111397706347 1.2271485233571007 1.086022090626927 1.1465457378023909 1.0109767598320367 1.049154457105302 1.0199316278557937 0.9125275408145185 1.0 16.36190068132697 1.6572015561239963 1.5931340296364118 0.9590350975141779 1.0745828570233658 0.17276993699841747 0.0883381736365598 0.6097192955830071 3.071369294122675 0.07303414728298598 0.026961762092748368 45.41523399064839 -1.6572015561239963 0.11554775950918783 DLADVDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLADVDLR 8 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 0 ; 114.89 0.0059752 193371000.0 780670.0 903650.0 824620.0 834920.0 843850.0 932040.0 897070.0 812190.0 1026510.0 947490.0 False True 776466.95946059 933727.44398204 940719.3282744706 940620.7863937244 951309.2956091904 867610.2685861634 853675.2969598102 872799.7420172542 773540.3650292845 887020.3770130007 0.8753654138987268 1.052656137535784 1.0605385768501718 1.0604274837081202 1.0724773863850565 0.9781176296172588 0.96240776320666 0.9839680853289597 0.8720660596706304 1.0 19.75860772155383 2.5411608837929456 5.97194903326294 0.9583038540918996 1.0298644597509223 0.22119393129602194 0.06159820997859269 0.33301909916966804 23.474734217746313 0.020120561628217862 0.01873550648282943 347.6649295852915 -2.5411608837929456 0.07156060565902278 DLAEDAPWK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLAEDAPWK 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 Q60FE5;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 ;;; 130.75 0.00082007 1042640000.0 2149740.0 1948750.0 1684040.0 1540910.0 1566500.0 2286370.0 2105060.0 1994950.0 2674670.0 2178510.0 False True 2138166.038698565 2013612.9657057484 1921138.1940619154 1735989.0480069388 1765984.4896270656 2128318.6234360593 2003230.205689877 2143823.2991508376 2015533.4172417978 2039475.6266837518 1.0483900914154523 0.9873189654048198 0.9419765399137147 0.8511938192807476 0.8659012476155986 1.043561685950015 0.9822280685683844 1.0511639713178422 0.9882606052611255 1.0 20.95976683523245 2.716692600170867 24.711267179763663 1.0164941702484773 0.9369350636934305 0.30179234845767944 0.05617966771374867 904.5196831365706 1022122.7297500353 0.019778563603596616 0.018662004764558322 520.825932582906 -2.716692600170867 -0.07955910655504683 DLAEDAPWKK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLAEDAPWKK 10 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 Q60FE5;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 ;; 141.88 5.8907e-05 3976900000.0 6818800.0 5846700.0 5206700.0 5048900.0 5175500.0 7468200.0 6945100.0 6471500.0 9954500.0 7336100.0 False True 6782088.338439898 6041303.875095221 5939758.102552298 5688090.222324623 5834569.247408153 6951940.912251825 6609138.980141556 6954436.191611143 7501346.858466076 6867903.817248795 0.987504851393904 0.8796430520652369 0.8648574966403211 0.828213436542157 0.8495414907754802 1.0122362073260214 0.9623225886685616 1.0125995320646484 1.0922323693040639 1.0 22.71143840433256 2.731052901831108 24.501113120567314 1.0118419430137167 0.8778886086102551 0.6456882667620514 0.04951317052463798 291.13075619834797 950090.7068871455 0.016473237799628414 0.015818564090342598 538.335353672943 -2.731052901831108 -0.13395333440346158 DLAEITTLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 DLAEITTLDR 10 0 Q9BS26 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 0 ;;;; 169.41 1.0799e-05 397953000.0 289609.0 343062.0 315201.0 309306.0 310105.0 316785.0 326431.0 314802.0 378669.0 317473.0 False True 288049.7773225851 354480.6112846413 359578.561023794 348464.1078861417 349595.03361366177 294886.398581679 310640.2854424826 338294.12377216597 285351.09885463805 297211.6013376905 0.9691740700098185 1.1926876665957666 1.2098402599541949 1.172444501889475 1.1762496216170697 0.9921766083640536 1.0451822339516772 1.138226510168416 0.9600940796736377 1.0 18.181130905473786 2.748466265931885 24.65225122441488 1.0455765506136265 1.1520089361492618 0.3481055258125467 0.07762295876882595 712.7862941341466 1773915.9693465715 0.024095988663076193 0.025265736424763666 560.358889481812 -2.748466265931885 0.10643238553563528 DLAEVGEGGGHSQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLAEVGEGGGHSQAR 15 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 229.15 5.0132e-13 2306000000.0 1686180.0 1846120.0 1609410.0 1748060.0 1733310.0 1824960.0 1645570.0 1566200.0 1802250.0 1707590.0 False True 1677101.79423221 1907566.9881968922 1836000.938757504 1969364.2167673686 1954036.75436673 1698804.810693752 1565967.4924121362 1683077.7970024548 1358109.6364127274 1598610.1442586514 1.0490999323727916 1.1932659097953604 1.1484982410198215 1.2319227573028149 1.222334764598223 1.0626761107421632 0.9795806050876443 1.052838181370965 0.8495564983684906 1.0 20.60838671857326 2.497928624295325 3.5193114593866657 0.9843813104639367 1.1722073466620628 0.654155598736799 0.06767617934804632 0.15244077994594912 3.9912761384551434 0.02382286728972583 0.020947996544947174 314.7231028475777 -2.497928624295325 0.1878260361981261 DLAEWLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLAEWLEK 8 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;; 140.5 0.0015087999999999998 264575000.0 706572.0 700087.0 634110.0 561614.0 576571.0 748239.0 769522.0 702982.0 856884.0 734163.0 False True 702767.8948595299 723388.9725834716 723387.1762170742 632714.2748164197 649993.8992459404 696514.9990951492 732297.2810004879 755442.0865102661 645716.4198573362 687308.0887914338 1.0224932694961886 1.0524959394199516 1.0524933257937965 0.9205686432833751 0.9457096604070135 1.01339560883083 1.0654570969594774 1.0991316686504293 0.939486134948255 1.0 19.39059741268986 2.4592678633827774 15.54506076388237 1.0419795591609509 0.9982975778344149 0.01993927320014477 0.05599294003160753 7.5086925269329505 6531.690494421736 0.020698441281322644 0.017354372996623332 287.9173678858934 -2.4592678633827774 -0.043681981326536 DLAGCIHGLSNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLAGCIHGLSNVK 13 0 P48735;P48735-2 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ; 182.89 1.0821e-05 2092100000.0 2371800.0 2664000.0 3182100.0 2356700.0 2621300.0 5210000.0 2834100.0 2232200.0 4430800.0 3281700.0 False True 2359030.492331752 2752669.629577995 3630112.0206909752 2655057.9783621025 2955107.0173376477 4849844.963020808 2697003.755686622 2398778.0988819296 3338888.7096781842 3072259.0963952765 0.7678488103752821 0.8959757439754152 1.181577434321941 0.8642037976150249 0.9618677737189923 1.578592433402247 0.8778568704869499 0.780786393210276 1.0867861742506508 1.0 21.55086845899073 4.471948264572941 23.623251791125863 1.023311939226258 0.7998804145883565 0.1430677522381626 0.21167178521723568 124.90372592668345 570400.0017615783 0.054037740810159475 0.14932215591494316 29644.7822435939 -4.471948264572941 -0.2234315246379015 DLAHTPSQLEGLDPATEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLAHTPSQLEGLDPATEAR 19 0 O75909;G3V5E1;O75909-1;O75909-4;G3V2Q3;O75909-2;G3V235 O75909 CCNK Cyclin-K 0 ;;; 261.58 3.6659999999999994e-31 1387360000.0 710320.0 842160.0 836050.0 781090.0 734010.0 867650.0 897210.0 712760.0 912010.0 901920.0 False True 706495.7160439716 870190.7865035295 953758.5729231286 879975.913913039 827481.8226818768 807671.3977284081 853808.52462496 765949.7705219431 687257.3558078917 844358.6934274397 0.8367246308273897 1.0305937432481824 1.1295656459124148 1.0421825709415287 0.9800122023058045 0.9565501060335985 1.0111917260650938 0.9071378982465174 0.8139400484149234 1.0 19.687496477275097 1.6802525273614801 4.69285005111146 0.8928441667926622 1.003906795242718 0.20065016468122543 0.08159204637317129 0.22365665724060588 11.405903397236022 0.04471812222442113 0.021532071082465763 47.89084802512334 -1.6802525273614801 0.11106262845005588 DLAILQCHGELDPMVPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLAILQCHGELDPMVPVR 18 0 O95372;Q5QPQ1;Q5QPQ0 O95372 LYPLA2 Acyl-protein thioesterase 2 0 ;; 203.81 1.1418e-15 1440880000.0 1143850.0 1367750.0 1162780.0 1328630.0 1233560.0 1420660.0 1320010.0 1268650.0 1496780.0 1401270.0 False True 1137691.6386936826 1413274.7319276652 1326489.316935057 1496834.4217724984 1390646.5541170528 1322453.1180739226 1256156.0733721117 1363323.105074169 1127918.6248244361 1311839.7489123961 0.8672489453356677 1.0773226936440716 1.0111671932755555 1.1410192616998192 1.0600735000368702 1.008090446390518 0.9575529895427776 1.0392451564335172 0.8597990918933177 1.0 20.323160063998298 2.467905836945146 4.919697924508924 0.9751286701930945 1.0386990836980117 0.1325533846418021 0.07805675112108307 0.3944559547012464 26.82499337282285 0.026601590356934105 0.023011084393235636 293.70127843726897 -2.467905836945146 0.06357041350491721 DLAMMIHDQGDLIDSIEANVESSEVHVER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLAMMIHDQGDLIDSIEANVESSEVHVER 29 0 Q86Y82 Q86Y82 STX12 Syntaxin-12 0 ; 136.8 2.3693e-06 30963000.0 12275.4 14980.599999999999 18428.4 17658.9 18893.2 16788.2 16660.699999999997 13328.1 17773.9 12996.7 False True 12209.310610325156 15479.220215036063 21022.958537475744 19894.5149293922 21299.13703123015 15627.67124917196 15854.758290945316 14322.710500720465 13393.760503057945 12167.239478965319 1.0034577384157326 1.2722047792185305 1.7278330531605104 1.6350886299053922 1.7505315867294324 1.2844056596559166 1.3030694693200513 1.1771536613117146 1.1008052012301583 1.0 13.570714263972434 1.8522988964401306 1.3022581887724143 1.0521819734283886 1.478648687513406 0.3660277987410563 0.21447212736275648 0.5058527667022198 1.5976841029448536 0.18000442705866548 0.07546094137575819 71.17031637990566 -1.8522988964401306 0.42646671408501735 DLANDIMTLMSHTKPYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLANDIMTLMSHTKPYIR 18 1 O14617-5;O14617-2;O14617;O14617-4;A0A2R8Y4J3 O14617-5 AP3D1 AP-3 complex subunit delta-1 0 ; 181.34 4.4459e-14 198721000.0 321560.0 394430.0 341190.0 338210.0 352530.0 372270.0 365540.0 337880.0 436550.0 366000.0 False True 319828.75668867485 407558.3641120304 389226.5863233568 381027.35132254753 397422.6058909854 346535.85112932004 347857.4337015949 363094.32131987537 328968.10197030165 342641.5666516349 0.9334207749926795 1.189459784738834 1.1359584598184058 1.1120289784045367 1.1598785569850218 1.0113654759279236 1.0152225169319955 1.0596913995815191 0.9600939698736695 1.0 18.38634065319265 2.7220562650453917 24.29980064436726 1.0172878985977496 1.112760382174742 0.3315617598038082 0.06797920179740596 662.771382084721 975814.2774473405 0.021080334040786988 0.01992814976307015 527.2981711412377 -2.7220562650453917 0.09547248357699245 DLAQDEAVWLER ddPTM_BT-474_Trastuzumab_2h_R1 3 DLAQDEAVWLER 12 0 A2IDA3;P29372-5;P29372-4;P29372-2;P29372 A2IDA3 MPG DNA-3-methyladenine glycosylase 0 ;; 173.11 7.8983e-05 255154000.0 252086.0 360141.0 291652.0 316649.0 296839.0 329953.0 314530.0 271302.0 352550.0 333295.0 False True 250728.79698538757 372128.0754751682 332714.0665153718 356736.7309332467 334639.6871474039 307144.12573581625 299314.98227871745 291547.9328836416 265668.77642796864 312023.82775179466 0.8035565706374022 1.1926271085014206 1.0663098036860044 1.1432996431830835 1.0724811933709097 0.9843611237925712 0.9592696315385673 0.9343771435159722 0.851437463421223 1.0 18.251296679379287 2.4664886629168663 2.1271613211033875 0.9288231938758894 1.0685811816844635 0.2307203786813692 0.10158884308529421 0.4090723613284435 3.755562481727129 0.03939542319124352 0.03215479301986788 292.7444450609609 -2.4664886629168663 0.13975798780857407 DLAQHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLAQHLR 7 0 Q96IQ9-2;Q96IQ9 Q96IQ9-2 ZNF414 Zinc finger protein 414 0 101.64 0.0089085 46953000.0 71470.0 97939.0 83780.0 78510.0 61377.0 89015.0 85124.0 59062.0 81953.0 78428.0 False True 71085.21346106344 101198.84040962429 95575.4957711856 88449.35795018834 69192.99714001932 82861.60256877108 81006.22691474138 63469.50635075911 61756.781263937984 73422.6578944111 0.9681645353031332 1.378305325791366 1.3017166432279315 1.204660257292607 0.9423929768318324 1.1285562923632388 1.1032864954471708 0.8644403263367886 0.8411133978934708 1.0 16.163937720378634 2.546830031572822 0.7882779296724333 0.8996322756835502 1.2276112273465478 0.40820886612486285 0.13268821344586354 0.5965914528175416 0.761853767659344 0.09731131487564666 0.07685747541755601 352.2329917764493 -2.546830031572822 0.3279789516629976 DLATVAFCDAQSTQEIHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLATVAFCDAQSTQEIHEK 19 0 P56545;P56545-3;P56545-2 P56545 CTBP2 C-terminal-binding protein 2 0 ; 369.71 5.905499999999996e-108 717570000.0 688720.0 669040.0 618780.0 589600.0 575480.0 767700.0 722230.0 703940.0 906330.0 767050.0 False True 685012.0080439851 691308.5919567788 705898.8454678226 664243.2995469498 648763.9668628034 714630.7059714148 687292.9757134729 756471.577334891 682977.11569979 718096.2122954566 0.9539278947792874 0.9626963352820803 0.9830143000077329 0.9250059924750734 0.9034499218272902 0.995174036201968 0.9571043043333728 1.0534404225817655 0.9510941626005722 1.0 19.453817627262847 2.2673060020372646 2.134622578948628 1.003998329965038 0.9488959225975722 0.26135784641513515 0.034303928829279046 0.3673217315329092 3.4123535105368514 0.01563810453524666 0.010753437518590174 185.05720648968702 -2.2673060020372646 -0.055102407367465744 DLAVPAALT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLAVPAALTPR 11 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 DLAVPAALT(1)PR 115.12 0.013034 94233000.0 104200.0 149220.0 143360.0 124230.0 145400.0 164710.0 113800.0 106610.0 148900.0 125960.0 True False 103638.99877770846 154186.69749460527 163543.84189254208 139957.50526241114 163915.82814668058 153323.98538563494 108295.05924178315 114565.77955461093 112205.59015777777 117921.12496021844 0.878884074525848 1.3075409308266122 1.3868918054141257 1.1868738982063378 1.3900463398901495 1.300224921000032 0.9183686067981228 0.9715458497640735 0.9515308660397461 1.0 16.847462667269294 2.237978260411488 24.999884527635615 0.9580274572435913 1.2555790598079763 0.4982261846627456 0.13791186045003856 12.341627734423675 529772.9926289574 0.04933754994502712 0.038653315762830195 172.972977152813 -2.237978260411488 0.29755160256438506 DLCNTHLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLCNTHLMR 9 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 169.93 5.8089e-05 1020720000.0 338440.0 418920.0 451490.0 451280.0 361520.0 423530.0 415610.0 335910.0 532390.0 394940.0 False True 336617.8766442187 432863.4989575125 515055.8675785695 508412.0017292197 407557.42910308077 394252.36798238044 395505.35651561944 360977.309916418 401189.61816050607 369734.59107485437 0.9104311167252105 1.170741146234482 1.3930421443156078 1.3750728603759161 1.1022972665832313 1.06631182880739 1.0697007152234443 0.976314682559243 1.0850746125598065 1.0 18.49613049777706 3.011948503596427 24.61233796301565 1.0403076042850459 1.2243134980936132 0.2896120104327199 0.12722183156975322 239.070687482732 492449.4441754365 0.039119097437377355 0.04672397766980997 1027.8944084735485 -3.011948503596427 0.18400589380856736 DLCQAHGLPLDGEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLCQAHGLPLDGEER 15 0 A6NKF1;F8WC89 A6NKF1 SAC3D1 SAC3 domain-containing protein 1 0 102.08 0.0015791 174310000.0 131890.0 152710.0 149550.0 159400.0 159650.0 170280.0 173560.0 146000.0 193370.0 173960.0 False True 131179.91889435655 157792.86003485566 170605.34008809732 179580.0236563499 179980.4811803131 158508.94439600443 165164.23973641405 156895.26137297804 145716.5545252483 162857.72386535103 0.805487856399213 0.968900069887487 1.0475729123486457 1.1026804218682602 1.1051393628043027 0.973297063435922 1.0141627662251378 0.9633885188196374 0.8947475813043116 1.0 17.313252618597954 -0.31829299072006345 7.108444891831001 1.0000001812755142 0.9931509704434226 0.0 0.08643500608610072 0.0 0.0 0.08629088554618775 0.020338956774767204 0.4805150662826018 0.31829299072006345 -0.006849210832091557 DLDANGDAQVDFSEFIVFVAAITSACHK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDANGDAQVDFSEFIVFVAAITSACHK 28 0 P25815 P25815 S100P Protein S100-P 0 ;; 292.87 3.2630999999999996e-71 1199910000.0 540621.0 577023.0 567706.0 639033.0 549130.0 598840.0 614340.0 553963.0 647210.0 571174.0 False True 537710.3566046403 596228.8617372302 647634.07021099 719934.5122784706 619058.4505514902 557443.6003177318 584622.0271932957 595302.5320271164 487713.76766967983 534721.1863133362 1.0055901474783766 1.1150275638935534 1.2111621659806258 1.346373644257669 1.1577219425690268 1.0424939474739283 1.093321233863957 1.1132952036770067 0.9120898519698619 1.0 19.02842731366382 2.7807383973210777 5.476129884574578 1.0502201322963804 1.1777049433169133 0.32402211165455075 0.095303800015293 0.2804733089069535 21.779559041097862 0.031528155063381774 0.03297500355085248 603.5849429596475 -2.7807383973210777 0.12748481102053288 DLDAPDDVDFF ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDAPDDVDFF 11 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ; 114.28 0.0029743 47573000.0 195109.0 241340.0 198416.0 197777.0 210460.0 237480.0 233320.0 199721.0 245210.0 214130.0 False True 194058.55482264757 249372.85600688934 226351.24813721143 222815.54792146757 237260.8335058483 221063.56656778918 222033.4202310443 214625.19518268888 184781.28114565936 200464.04007408392 0.9680467117739963 1.2439780018138444 1.1291364179508732 1.1114988395880048 1.1835580756437198 1.1027592105102364 1.1075972535971497 1.0706418722448752 0.9217677199230904 1.0 17.612983938749693 1.4527934579533857 2.9187148731833323 0.9618813536482894 1.1270810615237672 0.45114930148532684 0.06878525786710703 0.20131056402363448 3.2168044184151077 0.04957003997023971 0.01679148959115722 28.365696899855767 -1.4527934579533857 0.16519970787547777 DLDDFQSWLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLDDFQSWLSR 11 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;;; 236.95 3.3634e-15 1022940000.0 1375190.0 1426600.0 1242150.0 1200670.0 1240000.0 1393520.0 1405940.0 1204420.0 1705320.0 1455070.0 False True 1367786.1298379728 1474083.5186020893 1417033.923038652 1352674.6988925317 1397906.6499441797 1297189.242393235 1337929.3109876346 1294299.9363208357 1285066.7361172722 1362206.1868518977 1.0040962543262049 1.0821295137476534 1.0402492197700723 0.9930029036342922 1.0262078262724579 0.9522708492398504 0.9821782663310553 0.9501498002383945 0.9433716778860788 1.0 20.37751365904354 3.120680839000855 1.0874719051861395 0.9609169039859572 1.0452158704288435 0.5598293034236583 0.02762385480517462 0.3200759190832165 0.8149322995588503 0.011231822179523895 0.01568367032760722 1320.324976866747 -3.120680839000855 0.08429896644288626 DLDDIEDENEQLKQENK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDDIEDENEQLKQENK 17 1 Q96IZ0;H0YHP5 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 0 ;; 290.2 5.2596e-46 1578610000.0 1879490.0 1155580.0 1040700.0 948250.0 976720.0 1655800.0 1549490.0 1486730.0 2818510.0 1525280.0 False True 1869371.0346709704 1194042.7817371383 1187221.5140734406 1068298.3527737362 1101099.5025270008 1541338.4433339464 1474535.2490733806 1597677.3420619685 2123925.976599051 1427935.324542092 1.3091426499098882 0.8362022853661402 0.8314252709268586 0.7481419742286413 0.7711130074326719 1.0794175456288404 1.032634478418154 1.1188723428873146 1.4874104870822131 1.0 20.445499206201386 2.0150919129914944 1.4627062834648166 1.226833120542218 0.8942448570755316 0.29831862144060894 0.19122147798346018 0.4767620334380742 1.9043058303016174 0.127796032987233 0.06167175811520351 103.5361264747016 -2.0150919129914944 -0.33258826346668646 DLDDNLFGQHLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDDNLFGQHLAK 13 0 O14656;A0A494BZT7;O14656-2 O14656 TOR1A Torsin-1A 0 ; 169.58 2.8261e-05 989790000.0 2446400.0 2543700.0 2173460.0 2043390.0 2044740.0 2652600.0 2664200.0 2502600.0 3320500.0 2436000.0 False True 2433228.85422059 2628365.516800879 2479464.2759470167 2302082.964486506 2305125.518876504 2469232.005548751 2535322.467767654 2689356.719945309 2502207.267420425 2280532.3944354714 1.0669564967187926 1.1525227719694422 1.0872304563605155 1.0094497978207273 1.0107839399699123 1.0827436661604584 1.1117239439149709 1.1792670547050217 1.0972031239397622 1.0 21.12093923281494 2.2934912321196568 4.185846888378407 1.1195431471068074 1.066737771199239 0.004973485590726634 0.0571404797681037 0.42775687988023015 15.358475642984686 0.021831107520422808 0.01746280509983167 196.5582297450431 -2.2934912321196568 -0.0528053759075684 DLDEDELLGNLS(ph)ETELK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLDEDELLGNLSETELK 17 0 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 1 DLDEDELLGNLS(0.96)ET(0.04)ELK 107.34 0.00074385 11899000.0 47423.0 35754.0 32467.0 29721.0 33706.0 41405.0 39198.0 40954.0 57628.0 45648.0 True False 47167.67983719065 36944.05027625059 37038.07139177707 33483.67555263721 37998.259308885914 38542.76980688608 37301.84298909858 44010.195440198244 43426.35157563748 42734.705558781 1.103732416555723 0.8644975972850582 0.8666977087470911 0.783524189878432 0.8891662832827952 0.9019079294666258 0.8728700128234277 1.0298466987133637 1.016184644490065 1.0 15.383120561828243 1.726648093147348 6.95985476333355 1.0161489119611382 0.8904945781539068 0.32663303057771786 0.07692236610552361 0.1416544245721949 18.7247053303845 0.038021904134182806 0.019884432589844316 53.29029116770926 -1.726648093147348 -0.12565433380723146 DLDEEGS(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDEEGSEK 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 DLDEEGS(1)EK;DLDEEGS(1)EK;DLDEEGS(1)EK 206.97 1.3055e-05 4563910000.0 10153280.0 6715040.0 5381880.0 4896750.0 5214800.0 7265580.0 7351140.0 7674800.0 11350870.0 7048690.0 True False 10098615.868615462 6938546.047072592 6139601.923860454 5516678.047924906 5878873.869458797 6763327.555935642 6995537.27411813 8247532.547844744 8553600.182365445 6598836.569512875 1.5303630817698732 1.051480207758016 0.9304067253651773 0.8360076795070781 0.8908955097660155 1.024927270843883 1.0601167645881764 1.2498464632309534 1.2962285233557271 1.0 22.653780256924026 -0.7406715589514163 9.008589701623775 1.0000006995922366 1.0849812604653462 0.017673808608239194 0.19976695492722732 0.0 0.0 0.2020092848477912 0.04761404505950603 0.18168891902431547 0.7406715589514163 0.08498056087310957 DLDEEGS(ph)EKELHENVLDK ddPTM_BT-474_Trastuzumab_2h_R1 5 DLDEEGSEKELHENVLDK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK 219.18 4.5123e-19 3981830000.0 4072210.0 2272997.0 1908684.0 1593212.0 1873175.0 2910440.0 2780684.0 2842940.0 4723400.0 2729460.0 True False 4050285.673825063 2348652.3310892987 2177410.1166212657 1794912.4758442945 2111712.733071927 2709248.133238828 2646171.691675563 3055094.6189568113 3559381.3603173154 2555263.525991727 1.5850755245500951 0.919142901387347 0.8521274203122309 0.7024373249908415 0.8264168104745075 1.0602617325691828 1.035576825935616 1.1956084325083824 1.3929605788647097 1.0 21.285040654239022 1.9129558780662865 2.0781647297346217 1.2217913599668107 0.9594409103674139 0.11952033951407082 0.24006161068499082 0.5828304770048176 4.648163387110801 0.1474241934444135 0.07181551459649396 81.83816408319973 -1.9129558780662865 -0.2623504495993968 DLDEEIFDDDDFYHQLLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLDEEIFDDDDFYHQLLR 18 0 Q9NY61;A0A087WTH8;A0A087WWS8 Q9NY61 AATF Protein AATF 0 ;;;;; 299.65 1.7343e-49 696831000.0 546631.0 612582.0 522896.0 534707.0 541660.0 624964.0 618832.0 530135.0 774350.0 635038.0 False True 543687.9994324131 632971.421556361 596515.2117064922 602400.8513752562 610637.1903296494 581761.7096870121 588896.7319921901 569696.3656709843 583521.8182583962 594509.3311566145 0.9145155020101556 1.0646955201273607 1.0033740102043063 1.0132740056464526 1.0271280168835335 0.9785577436693854 0.9905592749006898 0.9582631185327962 0.9815183508106726 1.0 19.181339928491386 2.707781600534085 21.12217854343867 0.9782328523240529 1.008350250682565 0.08010229451326167 0.0366289510018124 199.3620090820667 136811.02172236834 0.011116663802890125 0.0104842224609475 510.2483400489236 -2.707781600534085 0.030117398358512126 DLDELDKDHLQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDELDKDHLQLR 13 1 Q8WXH0;Q8WXH0-2;G3V5X4;A0A0A0MRE3;A0A669KB61;A0A669KBG2 Q8WXH0 SYNE2 Nesprin-2 0 ;; 171.73 1.4772e-05 404429000.0 489770.0 460900.0 411963.0 382349.0 355408.0 510690.0 551740.0 432580.0 614960.0 513730.0 False True 487133.13273856207 476240.7778800664 469963.8095534135 430754.34419687366 400667.1021317432 475387.2023349512 525050.2283485194 464861.3161967319 463411.3480418208 480943.3115736193 1.0128701678887893 0.9902222703167106 0.9771709019420989 0.8956447336536811 0.833085921957794 0.9884474758147923 1.0917091800914847 0.9665615572773679 0.9635467151535283 1.0 18.87550732907383 2.4939853218146166 24.77129784609365 1.006741721917371 0.9405776645601664 0.2179465634995521 0.057748138455448725 1066.204641218792 1566128.3473624585 0.020488413711030582 0.018886852778940193 311.8784174359766 -2.4939853218146166 -0.06616405735720465 DLDELSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DLDELSR 7 0 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;; 205.92 0.00053482 5171070000.0 10005820.0 12235700.0 10765100.0 10890400.0 9310510.0 10681080.0 10845160.0 9533120.0 11415210.0 11002800.0 False True 9951949.776871106 12642957.877863163 12280732.50807342 12269123.523382131 10496148.260783691 9942722.080157826 10320538.178265542 10244529.822602496 8602084.45147727 10300591.884028988 0.9661531967208166 1.2274011066748505 1.192235615811032 1.1911085946823445 1.0189849650346707 0.9652573553150827 1.0019364221455547 0.9945573941713567 0.8351058413269199 1.0 23.296223902942327 3.098581215353681 4.245561459169429 0.9674888142989226 1.153041885112973 0.5396344711936465 0.08019551906110287 0.16497021025027814 5.4086545272118425 0.023327099321073103 0.0282082587804034 1254.8193737448787 -3.098581215353681 0.18555307081405026 DLDELSRYPEDK ddPTM_BT-474_Trastuzumab_2h_R1 7 DLDELSRYPEDK 12 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;;;; 217.91 3.2442e-11 10854760000.0 11070630.0 11497420.0 10366600.0 10125610.0 10104740.0 12401640.0 13144280.0 12310030.0 19396920.0 13213420.0 False True 11011026.95814262 11880104.674362855 11826127.1718975 11407511.18779782 11391518.743513683 11544343.817120416 12508440.960374227 13228666.947665768 14616808.971411701 12370128.223022008 0.8901303818055847 0.9603865424978237 0.9560230062844403 0.9221821295730254 0.9208893018839499 0.9332436664346997 1.011181188655329 1.0694041896062108 1.1816214600110937 1.0 23.560357118912176 1.937901354536612 2.125407361849722 1.095952745732714 0.9317037946132455 0.6978634547202079 0.04528449296862174 0.1613163516708558 1.3427520006147087 0.02520468916344457 0.01262190286064959 86.67649767701485 -1.937901354536612 -0.16424895111946858 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK ddPTM_BT-474_Trastuzumab_2h_R1 6 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK 33 1 Q15029;Q15029-3;K7EIV5;K7EIT3 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ;;;;; 382.34 2.9517999999999984e-150 8130120000.0 1691570.0 1203909.0 1045116.0 1099318.0 1017485.0 1544060.0 1498970.0 651382.0 2533240.0 1180690.0 False True 1682462.7750710938 1243980.383286641 1192259.2484888793 1238491.5460843875 1147055.683643915 1437322.766526276 1426459.0944785215 699991.4324907754 1908956.9456768911 1105337.3533604345 1.5221260459135746 1.1254305117842127 1.0786383404706137 1.1204647543296524 1.0377426223375594 1.3003475926662056 1.2905192158229486 0.6332830699719584 1.7270355877084052 1.0 20.076055322417336 4.738238624820591 6.642371127805718 1.1170936496981698 1.5295102016118192 0.1478588239090607 0.2629180710803401 0.19839502908318785 56.99810703540985 0.059985336367164445 0.36910595271669777 54731.660556516224 -4.738238624820591 0.41241655191364934 DLDEVLQTHSVFVNVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDEVLQTHSVFVNVSK 17 0 Q9Y3A5;A0A087X020;F8WE72 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 ; 274.52 1.0809999999999999e-35 2103050000.0 1740880.0 1591450.0 1559040.0 1451100.0 1501330.0 1921790.0 1848970.0 1651990.0 2463800.0 1902860.0 False True 1731507.295509952 1644420.4511981609 1778539.2805813937 1634809.1112153633 1692515.4764199161 1788941.1807070544 1759528.2573486823 1775269.882435248 1856629.503228562 1781417.8456795933 0.9719826820581776 0.923096428603942 0.9983841157170504 0.9177010970111281 0.950094600503027 1.0042232287308153 0.9877122661682103 0.9965488370629857 1.042220110083312 1.0 20.764594521016775 2.7381767440590568 24.691106706335674 1.0036141026599674 0.9512754659247501 0.5311031365242826 0.025253410758666592 23.765973721173953 1528629.508747888 0.007608329818218606 0.0076069932814230605 547.2386263206658 -2.7381767440590568 -0.052338636735217325 DLDFLHSVFQDQHLHTLLDLYDK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDFLHSVFQDQHLHTLLDLYDK 23 0 A0A2U3TZM1;A0A2R8YE77;O14936;A0A2R8YEK3;O14936-6;O14936-2;A0A2U3TZN6;A0A2R8Y3B3;A0A2R8Y6F8;O14936-3;A0A2U3TZM4;A0A2R8YFN5;O14936-4 A0A2U3TZM1;A0A2R8Y6F8 CASK Peripheral plasma membrane protein CASK 0 ; 79.783 0.004149100000000001 188474000.0 206990.0 199176.0 173062.0 158474.0 154656.0 211730.0 191448.0 21560.0 254030.0 111096.0 False True 205875.58883875087 205805.45275556532 197427.6253181301 178536.7921512945 174350.52488207028 197093.60345880914 182186.92883761795 23168.916679461676 191427.7103276046 104005.75816592907 1.9794633726942343 1.9787890246156052 1.8982374514606906 1.7166048813033972 1.6763545399468587 1.895025880628352 1.7517004063078885 0.22276571113013155 1.8405491551939268 1.0 16.66630387825957 1.909356533918582 10.276359740261588 0.9450886102237774 1.8478538106030171 0.49916843482991236 0.3758366586419559 0.3634577354009478 39.47842279031292 0.1478512065845865 0.09408723572180133 81.16270894315048 -1.909356533918582 0.9027652003792397 DLDGFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLDGFR 6 0 A0A087WYS1;E7EUC7;Q16851;Q16851-2;C9JVG3;C9JQU9;C9JNZ1;C9JWG0;C9JTZ5;C9JUW1;F2Z3H1 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 ;;; 127.1 0.040029 1849000000.0 3308460.0 3828750.0 3386060.0 3251510.0 3322160.0 3868110.0 3627810.0 3315050.0 4033680.0 3574870.0 False True 3290647.61896446 3956187.6292217528 3862787.815838872 3663150.83261517 3745217.384014966 3600716.66025152 3452318.970719979 3562435.8644828107 3039633.6125428174 3346718.7359998086 0.9832459428298513 1.1821093857293836 1.1542015091641369 1.0945499522298008 1.1190714486187943 1.0758946132877913 1.0315533640709795 1.0644563064599923 0.9082429245834871 1.0 21.67431587887 1.7890338315357583 1.0475581816034774 0.9673623068896107 1.1120731189134236 0.4464711795837193 0.05860732375364071 0.4429264233866948 0.9010461307351694 0.04786876324707704 0.01971559355502069 61.522479684866596 -1.7890338315357583 0.14471081202381297 DLDGFRK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDGFRK 7 1 A0A087WYS1;E7EUC7;Q16851;Q16851-2;C9JVG3;C9JQU9;C9JNZ1;C9JWG0;C9JTZ5;C9JUW1;F2Z3H1 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 ; 87.75399999999998 0.030641 834510000.0 1492100.0 1665160.0 1478480.0 1547710.0 1497600.0 1751860.0 1846880.0 1713190.0 2306400.0 1892260.0 False True 1484066.6993878928 1720583.843989524 1686637.1328214654 1743649.9273097184 1688310.4830293597 1630758.0416348611 1757539.358633257 1841036.9372025486 1738018.62417662 1771494.3467547102 0.8377484817304833 0.971261267156482 0.9520985127112039 0.9842819597499697 0.9530431108189878 0.9205550357088799 0.9921224766271379 1.0392564563218827 0.9811031163382395 1.0 20.75653543081655 5.62542697787124 1.2296090591209805 0.9827554010916827 3.034966022619323e-23 0.6475767077945902 0.03061102934496359 7.830050652268758 1.9405217717176646 0.009748071891238448 16.43681409731948 422111.2994315169 -5.62542697787124 -0.9827554010916827 DLDIFDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLDIFDR 7 0 Q14165;F5H1S8;H0YG07 Q14165 MLEC Malectin 0 ;;;;; 182.26 0.0015351 1074906000.0 1348810.0 2072220.0 2320690.0 1625000.0 2134130.0 2585430.0 2069040.0 1563290.0 2496430.0 1941970.0 False True 1341548.1568268775 2141192.5900165583 2647422.980200915 1830724.8333849944 2405898.805520461 2406705.309547579 1968952.630699642 1679950.6380257704 1881218.2769481628 1818031.811995835 0.7379123665356142 1.17775309314635 1.456202780794344 1.0069817377811585 1.3233535242044339 1.3237971380189977 1.0830132991667105 0.9240490881078263 1.0347554231644394 1.0 20.79394601341455 2.0006234135450214 24.99122187185346 0.9842546676366711 1.1853793255827492 0.16190193864688662 0.18710296790210545 34.65393351191477 1389151.811704511 0.0705138288365969 0.05161872104613071 100.14364935053209 -2.0006234135450214 0.20112465794607803 DLDIIDNYDYSHTVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLDIIDNYDYSHTVK 15 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 ;;; 295.03 4.966200000000001e-44 1792620000.0 2941210.0 2703990.0 2373530.0 2112900.0 2173310.0 3081700.0 2801940.0 2607730.0 3847530.0 3114030.0 False True 2925374.8521591523 2793990.67255353 2707702.3929074025 2380392.9233594835 2450068.1462824107 2868669.332541498 2666399.4577497565 2802332.054384627 2899357.785760612 2915289.9393447875 1.003459317263185 0.9583920401349446 0.9287935159944879 0.8165201310626681 0.8404200601855281 0.9840082435115296 0.9146258222086242 0.9612532930479127 0.9945349677336875 1.0 21.475207942716853 1.5156505304928702 1.346871275389061 1.0031587941795344 0.9149901771063209 0.23996604369729135 0.05462524470640329 0.620123175323741 2.15587260696126 0.052328030237265094 0.01783868309394743 32.78313865121551 -1.5156505304928702 -0.08816861707321344 DLDKADSMIR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDKADSMIR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 150.06 2.0292e-05 1189580000.0 2251020.0 2582010.0 2358870.0 2379370.0 2234490.0 2712830.0 3122420.0 2404470.0 4076020.0 2965400.0 False True 2238900.7584318323 2667950.6419919934 2690978.392334404 2680597.998037695 2519039.056640136 2525298.4474149207 2971376.6157972687 2583903.7610512613 3071539.4868697505 2776145.6331933304 0.8064781370480486 0.9610269036653949 0.9693217676188837 0.9655826286585227 0.9073872157573192 0.9096419212381641 1.0703244744330538 0.9307522379793389 1.1064043075206527 1.0 21.404651821237035 2.256318397165265 24.995613101229093 1.0131775724148968 0.9255288145578067 0.40811113705034685 0.06201726289348256 282.42382704841697 397535.046487862 0.02104740116868833 0.01757423255188124 180.4340083764984 -2.256318397165265 -0.08764875785709014 DLDKELDEYMHGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDKELDEYMHGGK 14 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 0 ; 150.57 4.3113e-06 188357000.0 626940.0 466390.0 404460.0 374890.0 393990.0 631920.0 584550.0 540400.0 933230.0 575230.0 False True 623564.6246995825 481913.50921129144 461404.45237065747 422351.035561662 444162.2911383125 588236.8577796755 556273.0833021483 580727.3920955978 703247.9711413223 538518.3289208197 1.1579264645442875 0.894887849364453 0.8568036176137274 0.7842834920921732 0.8247858378904301 1.0923246734396037 1.0329696380379638 1.0783799936008942 1.3058942163595761 1.0 19.038635923371867 2.7238114648375853 22.793162593208947 1.098561727202745 0.894002053533279 0.4019135823003931 0.12054847945921061 256.83886518584 396914.062501993 0.03963885470327439 0.037563444544156444 529.4335572245427 -2.7238114648375853 -0.20455967366946604 DLDKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDKPR 6 1 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 0 ;; 98.133 0.036737 877600000.0 1066270.0 1146830.0 972490.0 966430.0 979340.0 1074670.0 1143790.0 1092720.0 1528200.0 1217350.0 False True 1060529.3207937337 1185001.5432766245 1109408.138965388 1088779.9389097 1104053.1439970443 1000380.5924010687 1088460.5079978856 1174264.315119729 1151595.5868308656 1139657.6807742298 0.9305683089620911 1.039787265305482 0.9734573439734188 0.9553569964711106 0.9687585690178497 0.8777904183662038 0.9550767097523852 1.0303658150419246 1.0104749928491912 1.0 20.120169116159147 1.7556945180354093 10.815044370234022 1.0148744439853383 0.9583600454387555 0.3111200044880531 0.03838390665588958 0.1935800138145131 100.59846134324486 0.018942078294306615 0.010365933552029005 56.976336076449925 -1.7556945180354093 -0.0565143985465828 DLDLDAFAEELER ddPTM_BT-474_Trastuzumab_2h_R1 4 DLDLDAFAEELER 13 0 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ;;; 178.81 3.3215e-05 212288000.0 342279.0 365292.0 305645.0 304697.0 307606.0 340826.0 337982.0 338262.0 403898.0 347594.0 False True 340436.2078947722 377450.5233963228 348677.1592860353 343271.6089587132 346777.8007763949 317265.5008381054 321632.5194433778 363504.82809963194 304362.7498559177 325410.25332980504 1.046175418294943 1.1599220354429787 1.0715002238501965 1.0548887302908847 1.0656634117331691 0.9749708178880125 0.9883908578547509 1.117066301322773 0.9353200974507845 1.0 18.311900183944527 3.4400660421388736 1.462955831676987 1.0197592064947139 1.1013471785703735 0.31873854779180866 0.0532754680137891 0.5421077251175744 2.3610694706999853 0.017711737464759004 0.03160990737237676 2754.647564256231 -3.4400660421388736 0.0815879720756596 DLDLEPLS(ph)DLEEGLEETR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLDLEPLSDLEEGLEETR 18 0 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(0.996)DLEEGLEET(0.004)R;DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(1)DLEEGLEETR 249.0 1.4497e-24 656212000.0 303515.0 343889.0 341151.0 304098.0 297761.0 342240.0 336544.0 309982.0 380125.0 335110.0 True False 301880.9089636868 355335.13747970946 389182.09546235064 342596.77562012995 335679.0983822818 318581.75434630306 320264.0809970713 333114.4308967017 286448.28716403793 313722.99289789447 0.962253056988839 1.1326397666853774 1.240527804058708 1.0920359150457069 1.0699856433268609 1.0154874253988453 1.0208498842840814 1.0618107006429027 0.9130611834283582 1.0 18.25913174325541 2.9801982400721925 2.170220181966347 1.0112959084365616 1.118607170487212 0.31400188247941574 0.07240499058368578 0.3992488677601277 3.7699544999544408 0.024683680154051174 0.028545596134624308 955.4286058699532 -2.9801982400721925 0.10731126205065045 DLDLLASVPS(ph)PSSSGSR ddPTM_BT-474_Trastuzumab_2h_R1 7 DLDLLASVPSPSSSGSR 17 0 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 DLDLLAS(0.005)VPS(0.964)PS(0.027)S(0.003)S(0.001)GS(0.001)R;DLDLLAS(0.002)VPS(0.989)PS(0.008)S(0.001)SGSR;DLDLLASVPS(0.721)PS(0.248)S(0.027)S(0.003)GS(0.001)R;DLDLLASVPS(0.796)PS(0.184)S(0.018)S(0.002)GSR;DLDLLAS(0.002)VPS(0.753)PS(0.203)S(0.041)S(0.001)GSR;DLDLLAS(0.008)VPS(0.988)PS(0.003)S(0.001)SGSR;DLDLLAS(0.002)VPS(0.971)PS(0.02)S(0.005)S(0.001)GS(0.001)R 275.5 1.0575999999999998e-35 3406434000.0 2384140.0 2640550.0 2456950.0 2381020.0 2433640.0 2589830.0 2550630.0 2264140.0 2977330.0 2449680.0 True False 2371304.055142857 2728439.110503817 2802867.2038077656 2682456.887868522 2743549.6286856085 2410801.1479040636 2427246.2825471857 2433101.6238699607 2243606.9156780182 2293339.325123436 1.0339961597332419 1.1897232479353932 1.2221772735950904 1.1696729125438698 1.1963121194627144 1.0512186842539342 1.0583895091131106 1.0609427036005683 0.9783144130043901 1.0 21.129018402853607 2.675148624984391 5.649152197551194 1.03693236422008 1.167532165177155 0.6081519234397645 0.05302523196870068 0.15597184196335429 10.057538448537178 0.017358159048494057 0.016429855742073746 473.3132092870185 -2.675148624984391 0.13059980095707502 DLDLLASVPSPS(ph)SSGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLDLLASVPSPSSSGSR 17 0 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 DLDLLASVPS(0.242)PS(0.745)S(0.012)SGSR 285.9 2.4459e-36 551550000.0 495180.0 561700.0 510050.0 535930.0 514700.0 531470.0 524940.0 512420.0 593310.0 508150.0 True False 492514.00589966954 580395.8449451794 581860.6065659254 603778.6830498589 580243.9941340891 494730.7298458101 499546.64673446177 550659.3824160368 447096.7004466835 475719.43195089704 1.0353035272910736 1.2200381274420737 1.2231171726152739 1.2691907088465957 1.2197189249859797 1.0399632569494772 1.050086696450155 1.1575297232610733 0.9398327468213072 1.0 18.859751431430723 2.738175464589813 24.999762208551513 1.0572884199402792 1.2008028584504684 0.49092082631020373 0.07795563781894453 33.333173041256366 2163571.62365872 0.024859068863724916 0.024785265765102097 547.2370141105429 -2.738175464589813 0.1435144385101892 DLDPNPGDLYPESLEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDPNPGDLYPESLEHR 17 0 Q13796 Q13796 SHROOM2 Protein Shroom2 0 ; 124.18 5.1128e-05 209043000.0 274805.0 349991.0 331730.0 328635.0 312939.0 378584.0 370485.0 282777.0 396200.0 387610.0 False True 273325.4804137056 361640.23886097275 378434.7005511507 370240.1573042941 352789.92671522696 352413.37917087734 352563.2251598597 303879.2556525113 298561.81880800216 362872.3979503837 0.7532275311033106 0.9966044287292982 1.0428864324998752 1.020303995000793 0.9722148300832312 0.971177144256267 0.9715900882824006 0.8374273087975718 0.8227735713555847 1.0 18.469102796190473 1.7505249310269408 24.999999997956508 0.8722489204688938 0.9687384863191894 0.12321708925988084 0.08682468557793192 5.356369632856648 11211.211718956489 0.039442419973236165 0.021872842470264386 56.30214371687668 -1.7505249310269408 0.09648956585029556 DLDRPESQS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLDRPESQSPK 11 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 DLDRPES(0.019)QS(0.981)PK;DLDRPES(0.002)QS(0.998)PK;DLDRPES(0.199)QS(0.801)PK 193.62 2.2997e-06 1023740000.0 1069800.0 898960.0 787690.0 731818.0 764246.0 1043820.0 1080810.0 1053720.0 1592510.0 1079210.0 True False 1064040.3156659536 928881.3401672044 898589.9052757841 824466.0837650108 861568.1980590642 971663.1802879808 1028527.0912048497 1132353.9370817437 1200057.249040717 1010333.8938418342 1.0531571019753665 0.9193805590695336 0.8893989509337956 0.8160332824527408 0.8527559090222316 0.9617248181125485 1.0180071137610114 1.120771998231123 1.1877828273952609 1.0 19.94640072109736 2.117727033509947 2.0733301386257246 1.113774131154678 0.9025160338138893 0.5742000298306895 0.0730849771858644 0.22036226379677817 1.8460755417137917 0.03901835233261938 0.022926002927040102 131.13754030287467 -2.117727033509947 -0.2112580973407887 DLDSLHR ddPTM_BT-474_Trastuzumab_2h_R1 8 DLDSLHR 7 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ;;;;;;; 150.17 0.0019672 8439520000.0 5867093.0 8241060.0 7642830.0 7752910.0 7692740.0 8262320.0 8570290.0 7377610.0 9146640.0 7633870.0 False True 5835505.223183319 8515358.700274024 8718874.031330757 8734427.611076228 8672364.840557741 7691165.265809218 8155712.331012844 7928164.720944503 6892573.130696682 7146669.8809150765 0.8165348785406787 1.1915142076191292 1.2199911534481527 1.2221674929187931 1.2134833405019836 1.0761886856349971 1.1411905778371516 1.1093509079125623 0.9644454334043118 1.0 22.768839718145095 1.3197295336807453 4.218497253829172 0.981575550807258 1.1360095543992494 0.1939672825933686 0.11407663144071097 0.319117380312586 9.331008888754114 0.08686971863933801 0.028527975471409738 20.879953813967763 -1.3197295336807453 0.15443400359199144 DLDWEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLDWEVR 7 0 Q6PJG6;Q6PJG6-3 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 0 ; 86.47200000000002 0.046648 152320000.0 346620.0 323810.0 283740.0 296210.0 294780.0 366470.0 354210.0 299360.0 434050.0 363280.0 False True 344753.8364331026 334587.8201027216 323688.12568770855 333710.1556289048 332318.4857020529 341136.7914775881 337075.5090863979 321699.76331927895 327084.1934720183 340095.159380344 1.0136981574840607 0.9838064755533223 0.9517575206817728 0.9812258317258243 0.9771338301537127 1.0030627666066816 0.9911211606203161 0.9459110323869896 0.9617431605553229 1.0 18.375578946558218 1.7597950371436608 24.99999999999983 0.9637394207143309 0.9847078568189102 0.10851172086916627 0.020027892188240734 17.591248148821478 20728.173775330884 0.00929448788339979 0.00515437250503352 57.516842574528226 -1.7597950371436608 0.020968436104579213 DLEADIIGDTSGHFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEADIIGDTSGHFQK 16 0 P08133;P08133-2;E5RJF5;E5RK63 P08133 ANXA6 Annexin A6;Annexin 0 ; 244.17 4.8595e-20 591890000.0 552700.0 664750.0 769670.0 602440.0 771470.0 1188920.0 718260.0 840320.0 1286560.0 845030.0 False True 549724.3246107431 686875.8019001385 878032.8459084317 678708.8422304351 869712.1316390614 1106732.75881664 683515.0197803443 903028.9454584984 969504.5270207564 791099.461933418 0.694886485281177 0.8682546695474161 1.109889322592322 0.8579311134553116 1.099371410914017 1.3989805480486939 0.864006427345885 1.1414859811072668 1.2255153412079476 1.0 19.593499565111227 5.320303096773913 0.6936211103869062 1.1126981783964336 6.18736381726021e-10 0.42062188396384725 0.1511573879696183 5.89427631114403 1.207263621449542 0.05761338656459526 6.183790510562477 209075.47723345534 -5.320303096773913 -1.1126981777776972 DLEAEHVEVEDTTLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLEAEHVEVEDTTLNR 16 0 Q9H3K6;A0A087WZT3;H3BV85;Q9H3K6-2;H3BTW0;A0A0B4J295;H3BVE0 Q9H3K6 BOLA2;BOLA2B BolA-like protein 2 0 ;; 186.77 1.4468e-09 1804640000.0 1340250.0 1488950.0 1283860.0 1225280.0 1306880.0 1469040.0 1429710.0 1191000.0 1760460.0 1417100.0 False True 1333034.2429157752 1538508.800660719 1464616.3284888323 1380400.3223692128 1473303.421515365 1367488.7225481914 1360549.4652774155 1279878.4677754568 1326618.221955418 1326659.4647596527 1.0048051352479344 1.1596862959398901 1.10398815023279 1.0405084040306425 1.1105362458498567 1.0307759895233821 1.0255453651958097 0.9647377505480119 0.9999689122903576 1.0 20.339366667575156 2.3596274481189363 1.6964178723195051 0.9862803372792742 1.087474051684535 0.49410829858965966 0.041247019703929556 0.2756511060488197 1.6097748318200569 0.019247183826570195 0.013474442108908788 228.8903314910264 -2.3596274481189363 0.1011937144052607 DLEALMFDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLEALMFDR 9 0 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 ;;;;; 149.94 0.00020109 578514000.0 492472.0 561589.0 521498.0 488972.0 426788.0 594169.0 641237.0 447478.0 643861.0 561890.0 False True 489820.58547078253 580281.1503772801 594920.3854581249 550875.8050645713 481136.9220293361 553095.4955533801 610217.9165467782 480871.0806072423 485190.08384537895 526029.6991417689 0.9311652674172914 1.1031338179650767 1.130963492039999 1.047233275922138 0.9146573336340581 1.0514529815631508 1.1600446087784864 0.9141519602254321 0.9223625294103721 1.0 19.004784729458155 1.6346165524953928 12.655572098861363 0.9388298253710814 1.0481873070652359 0.2732726605248422 0.07654873181125964 0.14030243244379884 51.598089129725565 0.03698999287655877 0.02004659594285203 43.11382479307785 -1.6346165524953928 0.10935748169415449 DLEDKEGEIQAGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLEDKEGEIQAGAK 14 1 Q13409-2;Q13409-3;Q13409-6;Q13409;Q13409-5;Q13409-7;E7EQL5 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 ;;; 156.17 5.1469000000000015e-06 943000000.0 1541610.0 1132180.0 997000.0 985430.0 999110.0 1477840.0 1397960.0 1258840.0 2272470.0 1444960.0 False True 1533310.1430489724 1169863.926882738 1137368.9339206498 1110185.3369615849 1126340.736311073 1375680.3992611663 1330335.3340741943 1352781.0330599986 1712450.2180379156 1352741.4157075041 1.1334835506954801 0.8648097214284531 0.840788136382879 0.8206929455035138 0.8326356561811776 1.01695740463573 0.9834365375576298 1.000029286715136 1.2659109850216852 1.0 20.367454655548986 1.8896389300489753 1.292932367963074 1.1116160954933705 0.8979589732521641 0.337547775477648 0.11131701091847518 0.4857931457427724 1.5067876687956894 0.08471417290342766 0.03645192046880794 77.5602017413874 -1.8896389300489753 -0.21365712224120637 DLEDSLAR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLEDSLAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;; 214.11 2.204e-05 8220920000.0 8073900.0 8602250.0 7752030.0 7445600.0 7400470.0 8800140.0 8773450.0 7821710.0 9943130.0 8071670.0 False True 8030431.019494621 8888570.691080064 8843448.44214733 8388212.196585432 8342875.988477755 8191807.035101332 8349044.705666287 8405405.718038592 7492778.842615881 7556529.110095635 1.0627142306334592 1.1762769072383776 1.170305614297489 1.110061520887765 1.1040619134691811 1.0840700691746104 1.1048782561443242 1.1123368408399097 0.9915635516583159 1.0 22.849292292462003 1.2475808212361994 7.474293764359399 0.9950822954896537 1.1171985323071427 0.6797654708066423 0.032878383960495174 0.06965537195770408 23.6544617260312 0.025979885146133072 0.008399827261552029 17.684012826559027 -1.2475808212361994 0.12211623681748907 DLEEAEEYKEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEEAEEYKEAR 12 1 E5RJD8;O75347;E5RIW3;E5RHG6;E5RIX8 E5RJD8 TBCA Tubulin-specific chaperone A 0 ; 157.56 5.3917e-05 853130000.0 838960.0 781920.0 667400.0 621280.0 622390.0 857360.0 895080.0 772610.0 1280230.0 769130.0 False True 834443.1325772182 807945.7345193782 761364.1188552075 699933.984298726 701647.6773054509 798092.7212083526 851781.56086235 830266.081434086 964734.4707031014 720043.4649146788 1.1588788361215043 1.1220791158976984 1.057386332845094 0.9720718517758706 0.9744518372770625 1.1083952012576381 1.1829585328759027 1.1530777264015137 1.3398281044289695 1.0 19.457724470886486 2.409677465083392 4.172290130260145 1.177992709421368 1.0545672437713272 0.23792228989266684 0.09349657297273863 0.29301186536841695 10.176916366347944 0.03351400333681791 0.027945369613179408 256.8487550796857 -2.409677465083392 -0.12342546565004087 DLEEAEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLEEAEGR 8 0 P54886-2;P54886 P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase 0 80.438 0.059203 168150000.0 188820.0 217810.0 222080.0 198830.0 218740.0 359170.0 239200.0 185430.0 258330.0 236640.0 False True 187803.41409987435 225059.67418107463 253346.9336460362 224001.85761350067 246595.2424264437 334341.423295237 227628.98216726328 199267.72819446083 194668.03294465254 221537.4326023034 0.8477276814749983 1.015899080969735 1.1435852202044616 1.0111241923418934 1.1131086946788051 1.5091870451321676 1.0274967056059336 0.89947656183314 0.8787139521207421 1.0 17.757190962232954 1.9974549049005432 24.999925134074967 0.9270422959946506 1.1142623367809832 0.20285360839277866 0.16018693522119276 160.49490026753995 1576513.2965259207 0.06406477728267684 0.04649722326847257 99.41568400159015 -1.9974549049005432 0.1872200407863326 DLEEDHACIPIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLEEDHACIPIK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;; 152.7 5.9963e-05 5371450000.0 6572040.0 5669370.0 4919490.0 4594510.0 4330210.0 6304300.0 5796740.0 5297600.0 8225100.0 6074300.0 False True 6536656.866862292 5858071.553243467 5612111.431026374 5176174.494914276 4881636.576334504 5868498.579725922 5516329.540502771 5692933.812667732 6198134.31569334 5686632.973530127 1.1494775374617665 1.030147642816293 0.986895313474488 0.9102353746070989 0.8584405920088949 1.0319812456760151 0.9700519738446148 1.001108008757895 1.0899480139731412 1.0 22.439143262245352 4.684301322688098 2.207858696385781 0.9769349474247125 1.1822061035664202 0.42165127975918304 0.059616227704177314 0.5465366477233922 3.358380077112168 0.015820517579040284 0.20994857792620927 48339.40747397536 -4.684301322688098 0.20527115614170766 DLEEDHACIPIKK ddPTM_BT-474_Trastuzumab_2h_R1 6 DLEEDHACIPIKK 13 1 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;; 186.91 2.1615e-06 24398500000.0 25643450.0 21628210.0 19595650.0 18129150.0 17713710.0 26259390.0 25081240.0 24442910.0 38419600.0 26363420.0 False True 25505388.51445514 22348091.895320937 22354547.191556863 20424298.53117639 19969445.971115086 24444140.177255068 23867964.601558723 26266964.062782034 28951604.376264345 24680883.96474058 1.0334066053263107 0.905481826633426 0.9057433770805311 0.8275351304416323 0.8091057840409479 0.9904078076043091 0.9670627938471246 1.0642635045125348 1.173037579108794 1.0 24.556890730850792 1.9931469863897464 1.6413597340737522 1.0908233859821967 0.8983301716743605 0.5183503725777747 0.07274622668378429 0.2910990806690664 1.4627778364355988 0.0476027213864563 0.023183273735487626 98.43441993754142 -1.9931469863897464 -0.19249321430783628 DLEEFFSTVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEEFFSTVGK 11 0 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;H0Y4X3;A0A0U1RQH7;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 0 ; 192.26 3.4178e-06 361855000.0 477520.0 464940.0 429300.0 409900.0 404090.0 469120.0 502320.0 474750.0 670640.0 488720.0 False True 474949.0853774593 480415.2468378344 489741.7084575074 461793.29797200643 455548.4662709224 436690.8385896965 478020.86255125294 510178.2557316522 505369.7581155948 457529.47118575784 1.0380732068396727 1.0500203311335652 1.070404726472082 1.009319239644166 0.9956702135281005 0.9544540102694263 1.0447870413951446 1.1150718977937026 1.104562197503587 1.0 18.803505150214132 1.99183028565653 24.894417018428655 1.08448022404037 1.0199366989307124 0.23852706313523597 0.04152902519264323 432.1375310217111 1316792.1221917684 0.01666695382652611 0.011741425775990015 98.13643688245874 -1.99183028565653 -0.06454352510965755 DLEEWNQR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLEEWNQR 8 0 P09497-2;P09497 P09497-2 CLTB Clathrin light chain B 0 ;;; 193.96 0.00039056 9091300000.0 3560580.0 4022380.0 3757450.0 3861860.0 3693110.0 3982430.0 4108970.0 3707750.0 4208690.0 3905570.0 False True 3541410.2328976286 4156262.486719945 4286466.299659125 4350771.08003457 4163405.6677220557 3707133.987731852 3910203.423310286 3984441.1325730043 3171514.7430566656 3656313.178873294 0.9685740962673571 1.1367359094771832 1.1723465934009554 1.1899339217367795 1.1386895662490881 1.0138994682272318 1.0694388669723387 1.0897428468643444 0.8674078471675064 1.0 21.801958218017923 1.3017587209093866 7.7268620573156905 0.9345192684953217 1.1014252557934474 0.45731126339337935 0.07123898175635376 0.18795650768911018 19.569235513616746 0.04982646835171917 0.018000729569381986 20.033587208718842 -1.3017587209093866 0.16690598729812567 DLEFTIYDDDDVSPFLEGLEERPQR ddPTM_BT-474_Trastuzumab_2h_R1 8 DLEFTIYDDDDVSPFLEGLEERPQR 25 1 P25786;P25786-2;F5GX11 P25786 PSMA1 Proteasome subunit alpha type-1 0 ;;;;;;; 381.91 4.687699999999998e-121 5759760000.0 486581.0 529535.0 518075.0 524195.0 488445.0 554646.0 534042.0 447283.0 552814.0 523261.0 False True 483961.30196023156 547160.2523643329 591015.4568113745 590558.0332530763 550645.5755096652 516304.62751624547 508208.34822144476 480661.528717053 416580.3970280841 489866.03499371995 0.9879462289448908 1.1169589505656325 1.2064838437287273 1.2055500709712343 1.1240738001293036 1.0539710668506839 1.0374435292864506 0.9812101562077375 0.8503965722657718 1.0 18.902027739838267 2.0642992353266223 1.3056135871301475 0.9317987074207156 1.1339700530965222 0.5709103389579151 0.06849607933665162 0.32502880751170915 1.0369478772941259 0.04940081506155719 0.024347460748031905 115.95760460291523 -2.0642992353266223 0.20217134567580664 DLEGENIEIVFAKPPDQK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLEGENIEIVFAKPPDQK 18 1 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;; 234.28 8.391500000000001e-24 3521410000.0 5487200.0 4264820.0 4147080.0 3382470.0 3686590.0 5594800.0 5117830.0 5341920.0 7851100.0 5350200.0 False True 5457657.524885238 4406771.955561862 4730952.816934448 3810690.355187533 4156055.3843691307 5208044.644742571 4870261.010890825 5740561.196120123 5916301.604350099 5008745.655463334 1.089625606948568 0.8798154785031131 0.9445384418300655 0.7608073192997908 0.8297597183510159 1.0397901995805776 0.9723514320553578 1.1461075468782398 1.1811942572681526 1.0 22.256017922601316 2.176261668405037 1.6791211494947278 1.1168608800906024 0.9002873606766026 0.41430756489203424 0.09855533084739462 0.33338475038634247 1.8371037446304372 0.05537769823582331 0.03214900904151658 150.0588688529146 -2.176261668405037 -0.21657351941399972 DLEGLSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLEGLSQR 8 0 P35579 P35579 MYH9 Myosin-9 0 122.52 0.0074173 0.0 597830.0 693130.0 612040.0 647050.0 610050.0 727770.0 675010.0 577490.0 757060.0 709850.0 False True 594611.3497051572 716200.4130440664 698209.9120529536 728966.4636564695 687736.2514503602 677460.9728863058 642357.1875113888 620585.2362348011 570492.7070842659 664546.765266839 0.894762236133073 1.0777276340461708 1.0506557981252045 1.0969377954368098 1.034895190821085 1.0194331058315833 0.9666094563765723 0.9338473508115178 0.8584688646482133 1.0 19.342011202372543 2.106504921483704 2.00099059679443 0.9234150917340782 1.0378629549396972 0.35533863399030086 0.059951275990562866 0.3262068615279013 2.527336024200225 0.031228434500440785 0.01792948643887562 127.79236910880375 -2.106504921483704 0.11444786320561895 DLEGSDIDTR ddPTM_BT-474_Trastuzumab_2h_R1 5 DLEGSDIDTR 10 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ;;;; 247.75 2.2572e-12 13291560000.0 11416690.0 13136050.0 11228540.0 11336010.0 11561860.0 13061330.0 12860980.0 11308880.0 15011060.0 13264160.0 False True 11355223.809553498 13573275.483340079 12809420.83178071 12771147.703692699 13034194.33848681 12158431.000163635 12238845.26368532 12152806.050929064 11311785.400898661 12417629.952781295 0.914443726599387 1.0930649032829283 1.0315511800954948 1.0284690196322224 1.0496523401043543 0.9791265359329213 0.985602350063916 0.9786735550294832 0.9109456026562502 1.0 23.565886509134632 2.6212894682937016 5.23599891111367 0.9705059880364582 1.0278889146336583 0.23484993230186357 0.047267491962708644 0.3140210363045128 12.301316007266102 0.014762162348573488 0.01386076837445865 418.10895402214317 -2.6212894682937016 0.05738292659720012 DLEGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEGYR 6 0 A0A0B4J1W3;Q9BXJ9;Q9BXJ9-4;Q6N069;Q6N069-5;Q6N069-4;Q6N069-3;Q6N069-2 A0A0B4J1W3;Q6N069 NAA15;NAA16 N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit 0 ; 137.44 0.029627 754200000.0 674160.0 803490.0 773360.0 735590.0 773960.0 861950.0 811140.0 762890.0 1004350.0 844460.0 False True 670530.3974662175 830233.6789300378 882242.3658343758 828715.6185782586 872519.2183796748 802365.425312051 771902.059344289 819820.7256769268 756841.4001004985 790565.8398214206 0.8481651542364673 1.0501765154912053 1.115963176493515 1.0482562954724373 1.1036642040804172 1.0149254937366075 0.9763918708132551 1.0370049961456904 0.9573413901509581 1.0 19.592526092401112 1.2483284402363055 24.494613670490484 0.978670692181621 1.0292726334299984 0.058367241534789116 0.07114668924396607 388.496720528173 974249.2460585356 0.04871429041062525 0.017290376795526214 17.714481300546005 -1.2483284402363055 0.05060194124837747 DLEHLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLEHLSK 7 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;;; 129.68 0.0036367 4047640000.0 5563000.0 8249300.0 8100100.0 7265200.0 7851800.0 9853800.0 9748900.0 9642400.0 10315800.0 9015500.0 False True 5533049.426107402 8523872.963692851 9240523.672668668 8184973.575082263 8851680.188735247 9172629.999350177 9277308.462585414 10361964.85111508 7773609.314638046 8440123.071442116 0.6555650171534763 1.0099228283215573 1.0948328116132306 0.9697694578384558 1.0487619805788935 1.0867886548226484 1.0991911354913753 1.2277030516504766 0.9210303272639143 1.0 23.008832605373303 4.741148643209078 3.0971236027088533 1.0720841491661168 0.5897008302694503 0.6840991549570081 0.08050972405616673 0.20554818209338596 2.985987423859415 0.020507399871274194 0.2432437625082421 55099.62501167806 -4.741148643209078 -0.4823833188966665 DLEHSLQMEAYER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLEHSLQMEAYER 13 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 0 194.85 6.669499999999999e-07 161160000.0 35619.0 40554.0 37784.0 37644.0 37829.0 38691.0 32927.0 37784.0 46602.0 36679.0 False True 35427.23126164292 41903.815374589314 43103.65877558461 42409.726540273696 42646.298919950306 36016.38223881729 31334.195216644974 40603.63394326441 35117.561534807 34338.114817528236 1.0317174210029356 1.2203295258713238 1.2552715547908273 1.2350627506966465 1.241952248880625 1.048874768757904 0.9125193792132735 1.1824654369941672 1.0226991703365407 1.0 15.067523216266911 2.7286908211733256 23.698859224145735 1.0458121415233395 1.2035369067655866 0.47083149093508503 0.08604269139639155 322.9337324204681 775410.3739962596 0.028184188678222442 0.026896049339399958 535.4153539593715 -2.7286908211733256 0.1577247652422471 DLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSK 40 1 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 ; 231.49 3.0346999999999987e-41 570820000.0 116641.0 99883.0 93095.0 90907.0 66061.0 172605.0 159084.0 112435.0 174156.0 151116.0 False True 116013.0178160334 103207.54527445156 106201.96680375408 102415.81687909517 74473.4767757762 160673.22261846566 151388.4991601042 120825.47063336155 131237.58737083914 141471.6475030835 0.820044297663988 0.7295281216839018 0.7506943523891549 0.7239317466551941 0.5264198027675685 1.1357273733237865 1.0700978028604957 0.8540613809613551 0.9276599918579354 1.0 17.110153424276767 2.7339438856976668 24.999943879467608 0.98349665274473 0.714222732904762 0.6749043891114689 0.09947081530702442 266.8899532388317 1445224.6467349315 0.03375404652816918 0.03280136736670772 541.9308640984696 -2.7339438856976668 -0.26927391983996796 DLEIQALHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLEIQALHAR 10 0 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 110.31 0.0019031 273610000.0 212400.0 247550.0 244370.0 289180.0 261250.0 235600.0 253510.0 200610.0 235310.0 209820.0 False True 211256.4619998584 255789.55210286472 278775.17189788294 325790.15834970685 294518.6389499332 219313.52654274512 241246.75279775434 215580.53687693915 177321.0034924562 196429.10796406024 1.0754845052725641 1.3021977992674354 1.4192151804145503 1.658563548582195 1.4993635210308036 1.1165021763621303 1.2281619323033028 1.097497917245457 0.9027226429440377 1.0 17.583649206552757 1.9808649225087307 1.182316797610661 0.9710058024753785 1.3866493871751335 0.5127252944613504 0.15788383590619554 0.4172548797889814 1.0772790241594377 0.12960191122804035 0.059406980289737114 95.68964039882667 -1.9808649225087307 0.41564358469975504 DLEKPFLLPVEAVYSVPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEKPFLLPVEAVYSVPGR 19 1 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 ; 220.62 2.6049e-19 1282650000.0 1184220.0 1260710.0 1346560.0 1030000.0 1345900.0 2429070.0 1240640.0 1185620.0 1861610.0 1560810.0 False True 1177844.2910992112 1302671.970234713 1536143.9434906614 1160397.8943917204 1517292.3872257043 2261154.1083157295 1180625.503494956 1274096.9848563718 1402841.159795974 1461197.7695233305 0.8060813639781599 0.89150968979351 1.0512909173080518 0.7941415724787642 1.0383894766830042 1.5474661647296104 0.8079847424624099 0.8719538254373367 0.9600624837071894 1.0 20.47872002590564 3.206711602556509 24.692253785504903 1.0280408893572675 0.8979907475148488 0.12180575584767295 0.1977068292548686 468.8044194779741 363458.34177329874 0.06161007884656617 0.07364443161188415 1609.5764254434855 -3.206711602556509 -0.1300501418424187 DLELALS(ph)PIHNSSALPTTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLELALSPIHNSSALPTTGR 20 0 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 DLELALS(1)PIHNSSALPTTGR 182.02 3.1467e-17 434590000.0 45369.0 71772.0 77711.0 69975.0 81180.0 96440.0 104470.0 79679.0 66349.0 87986.0 True False 45124.738344969766 74160.88763290989 88652.03332387918 78833.82782530166 91517.79180844242 89773.32979534111 99416.3869858444 85625.05158176381 49998.17798105041 82370.65815139547 0.5478253950822085 0.900331371598413 1.0762574357599362 0.9570620120626789 1.111048446890332 1.0898702500390332 1.206939330302779 1.0395091347259462 0.6069901479863722 1.0 16.329842895621127 4.702389746448627 2.5740265010338814 1.0275972496132861 0.4679052141970579 0.45412249538925986 0.15137281570140168 0.3824005147463718 3.4539243681558682 0.037466173298573456 0.44756082253154256 50395.26653137731 -4.702389746448627 -0.5596920354162283 DLELER ddPTM_BT-474_Trastuzumab_2h_R1 4 DLELER 6 0 A0A494BX66;A0A590UJT6;Q2TAC2-2;Q2TAC2 A0A494BX66 CCDC57 Coiled-coil domain-containing protein 57 0 ;;; 105.2 0.077189 1268970000.0 2046850.0 2139810.0 1955020.0 1693700.0 1631790.0 2716660.0 2534570.0 1783080.0 2525770.0 2372270.0 False True 2035829.987026415 2211032.2823075373 2230269.822661532 1908122.2463410273 1839588.7841229169 2528863.6885297727 2411963.1661023423 1916142.4838967794 1903327.8270840214 2220869.697597471 0.916681419548733 0.9955704671460123 1.0042326324116313 0.8591779375463707 0.8283190977448959 1.1386817026075364 1.0860444305722192 0.8627892424169034 0.8570191349555693 1.0 21.08269331919034 -1.2404945138530838 4.093252008972125 1.0000257285616687 0.9515991608312067 0.0219714343678431 0.0997850962214278 3.56222411008561e-05 6.609835863092681e-06 0.1003549430966604 0.02363549395244166 0.05747850796687798 1.2404945138530838 -0.048426567730462056 DLELPDMHMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLELPDMHMR 10 0 B3KPJ4;A0A0A0MSI2;Q8IXK0-3;Q8IXK0-2;Q8IXK0-4;Q8IXK0;Q8IXK0-5 B3KPJ4 PHC2 Polyhomeotic-like protein 2 0 ; 129.7 0.00029610000000000004 222870000.0 210910.0 239320.0 222070.0 261080.0 232620.0 254220.0 268650.0 238430.0 297510.0 261540.0 False True 209774.48399430388 247285.62152800502 253335.52573295747 294132.70123086474 262242.77815323847 236646.36976951032 255654.37315733827 256222.85732300783 224192.64692975473 244848.29328434056 0.8567528945390454 1.0099544424466704 1.034663228951981 1.2012854869659662 1.0710418873481704 0.9665020188427231 1.0441337765848695 1.046455557790873 0.9156390021040556 1.0 17.901528614209038 4.740242924493861 2.8414899575660195 1.0415157060178977 0.8231834759499796 0.3597635357820387 0.07047836687641919 0.4609881484474414 5.187488136109502 0.01781226419295814 0.23339594152707036 54984.834790394365 -4.740242924493861 -0.21833223006791802 DLELPLS(ph)PSLLGGPGPER ddPTM_BT-474_Trastuzumab_2h_R1 4 DLELPLSPSLLGGPGPER 18 0 P19419 P19419 ELK1 ETS domain-containing protein Elk-1 1 DLELPLS(0.995)PS(0.005)LLGGPGPER;DLELPLS(0.934)PS(0.066)LLGGPGPER;DLELPLS(0.913)PS(0.087)LLGGPGPER;DLELPLS(0.978)PS(0.022)LLGGPGPER 185.25 5.6729999999999995e-14 353321000.0 552990.0 573851.0 504143.0 523598.0 432403.0 585080.0 413727.0 465286.0 705330.0 500310.0 True False 550012.7632829652 592951.2836347455 575121.9523104903 589885.4531142873 487466.9589966241 544634.7967301757 393713.44441937795 500008.00399443455 531510.8724377804 468379.78746305883 1.1742879987671218 1.2659625788858613 1.2278966080615727 1.2594169708077159 1.040751484253728 1.1628059350727877 0.8405858983622989 1.067526860419591 1.1347861002215018 1.0 18.83731929332462 3.233479891833639 24.843418768481335 1.0378122766113664 1.2340394165260815 0.549692757818905 0.08456833134291539 85.30684744499113 417128.40782423806 0.024122380514463533 0.029680627067769545 1711.9059123160473 -3.233479891833639 0.19622713991471508 DLEPESDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEPESDR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ; 128.61 0.0026201 1246450000.0 691280.0 769000.0 660120.0 739750.0 709610.0 772230.0 796890.0 671930.0 863730.0 729720.0 False True 687558.2252884276 794595.7001296836 753059.1581341008 833402.2741517237 799974.6273120085 718847.5577338886 758341.386284576 722072.8285914054 650875.3148890355 683148.6448552759 1.006454789109749 1.1631373437006782 1.1023357270856264 1.2199428051683816 1.1710110725338292 1.0522564351806267 1.1100679068831787 1.0569776197746474 0.952757968255829 1.0 19.381840000043095 1.5427699244274247 1.6680175177406922 0.9741797189263517 1.126571547028111 0.47259233608611295 0.05871180847160867 0.29355367728037135 1.6076007747502645 0.049489604950082075 0.016808899706610196 34.89554008934452 -1.5427699244274247 0.15239182810175933 DLESAEER ddPTM_BT-474_Trastuzumab_2h_R1 3 DLESAEER 8 0 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;; 134.08 0.0020747 2939170000.0 1955780.0 2173090.0 2128650.0 2046760.0 2051370.0 2155110.0 2140750.0 2052770.0 2345840.0 2031190.0 False True 1945250.2977875832 2245419.9869893547 2428345.417442521 2305879.6061409693 2312599.810077417 2006132.3182832596 2037193.7440408412 2205958.121154851 1767739.1646455457 1901557.7152107507 1.0229772581853978 1.1808318879979374 1.2770295626674608 1.2126266732248026 1.2161607252720754 1.0549941777922418 1.071328904584449 1.1600794987757514 0.9296268793238422 1.0 20.85875029697777 2.7333861607534726 24.56289816911819 1.0641822433929924 1.1888536924241209 0.40098312197495634 0.08259627224848039 397.87643906632087 1888696.374522142 0.026958406726437102 0.026156702049884115 541.2353582112903 -2.7333861607534726 0.12467144903112848 DLESCS(ph)DDDNQGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLESCSDDDNQGSK 14 0 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3;F8W895 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 1 DLESCS(1)DDDNQGSK;DLESCS(1)DDDNQGSK 363.3 3.0063e-83 754710000.0 1713660.0 1233400.0 1038270.0 1032010.0 1044450.0 1447660.0 1385030.0 1438980.0 2144000.0 1416310.0 True False 1704433.844965524 1274452.973393956 1184449.3911953806 1162662.3601856313 1177454.5165598397 1347586.6716250875 1318030.80757159 1546363.9945923816 1615639.92812811 1325919.8832360036 1.2854727246458735 0.9611839972439067 0.8933038912612472 0.8768722566766776 0.8880284031084719 1.01634094839592 0.9940501113497447 1.1662574897197924 1.2185049402721253 1.0 20.338562174676607 1.7930244665328483 4.957013647717147 1.1440674685158523 0.9748702914479318 0.20959683501379045 0.12214957927623314 0.2748127077540977 12.693006832382475 0.05992428399768943 0.032990092954722515 62.09040126632465 -1.7930244665328483 -0.16919717706792048 DLESLFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLESLFHR 8 0 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 175.44 0.00026609 319430000.0 379670.0 473510.0 475880.0 423790.0 433000.0 518260.0 437260.0 409100.0 572840.0 481590.0 False True 377625.89890530263 489270.49410716083 542879.7675768902 477441.7705478327 488139.98340792744 482433.90605281416 416108.0633045884 439629.1193677074 431671.2576627363 450854.51389005734 0.8375781704991163 1.085207043588503 1.2041129695981563 1.0589708117334249 1.0826995591020352 1.0700434201939866 0.922932011291913 0.9751019582226312 0.9574513382115124 1.0 18.78230244017756 2.250618661479273 24.949217419085315 0.9618340607202454 1.0657648520180036 0.21050041734315228 0.08666249000753688 310.0627090330906 641548.0173461204 0.030513796755572014 0.02534867090799353 178.0814411020527 -2.250618661479273 0.10393079129775828 DLESLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLESLR 6 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ; 159.14 0.021423 567240000.0 711970.0 952530.0 885170.0 825190.0 814070.0 840190.0 901940.0 792130.0 1052600.0 827800.0 False True 708136.8326273027 984234.3852334555 1009794.241964435 929658.9693913631 917736.9891290808 782109.6428945203 858309.7164546052 851242.7629546383 793200.8341173731 774969.0952847645 0.9137613834356787 1.2700304969862002 1.3030122725002127 1.1996077973273984 1.184223983527828 1.0092139772452886 1.1075405737814834 1.0984215604647394 1.0235257624381902 1.0 19.56377925325154 2.758594047516638 21.222336953465216 1.0624150491897748 1.1880311359703224 0.26171452507717063 0.10338671360109272 163.90809250861165 173633.75878475106 0.03142339499831758 0.033253102305852926 573.580063242866 -2.758594047516638 0.1256160867805476 DLEVDGHFVTMQIWDTAGQER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLEVDGHFVTMQIWDTAGQER 21 0 P51151 P51151 RAB9A Ras-related protein Rab-9A 0 134.9 7.4836e-06 42961000.0 31952.0 49640.0 42241.0 38733.0 52963.0 61016.0 50366.0 45657.0 53737.0 58208.0 False True 31779.973982200914 51292.23739198631 48188.16563464611 43636.593828616045 59707.524113704516 56798.10753621452 47929.60416319559 49064.15718154834 40494.236388908685 54493.11560562397 0.5831924570471991 0.9412608697802679 0.8842982292183866 0.8007725993210145 1.0956893077249998 1.0422987730646962 0.8795533826707644 0.9003734992257383 0.7431073804253077 1.0 15.733786357898008 4.740866532852114 24.675819862285273 0.9192760299787082 0.5831923152935464 0.5026387824658632 0.10074375120682949 149.83706429970786 1603296.7563115451 0.02444096212554294 0.1633724368536014 55063.84484866784 -4.740866532852114 -0.33608371468516174 DLEVS(ph)EIRK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLEVSEIRK 9 1 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;A0A0A0MRA3;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9 A0A0A0MTS7 TTN Titin 1 DLEVS(1)EIRK 63.48 0.080286 560580000.0 205530.0 378700.0 481570.0 362930.0 465190.0 475150.0 723490.0 534700.0 481840.0 366290.0 True False 204423.44931652982 391304.80057101545 549370.8701185226 408876.90078794875 524429.1891028496 442303.99888278975 688492.0246998041 574602.0291515838 363096.9883252092 342913.05860335357 0.5961378378214105 1.1411195658886717 1.6020704267024666 1.1923631676590518 1.5293357192018024 1.2898429726888918 2.0077742956303704 1.6756493074130026 1.0588601956544395 1.0 18.38748331957818 4.6280305114849325 2.4119421024890486 1.4768020052979594 0.49634159371105446 0.40861693724740955 0.29439619916540466 0.3797998622734124 3.1906590630515255 0.07382615736675661 0.6955461180561205 42464.93967650194 -4.6280305114849325 -0.9804604115869049 DLEWVER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLEWVER 7 0 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 ; 94.662 0.032652999999999995 754450000.0 743680.0 822640.0 724100.0 721710.0 808040.0 810420.0 795420.0 753960.0 993400.0 818010.0 False True 739676.1095106154 850021.0751036184 826046.986009972 813078.4120014072 910939.1043716896 754397.5729234783 756942.4958005206 810224.3237313057 748589.8808780161 765803.9014664039 0.9658818766713547 1.1099722441684494 1.078666463344221 1.061731874758642 1.189520062025504 0.9851054186050971 0.9884286229817909 1.0580049568562437 0.9775216337296985 1.0 19.546615484601244 DLFAFQES(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLFAFQESPPR 11 0 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 DLFAFQES(1)PPR;DLFAFQES(1)PPR;DLFAFQES(1)PPR 170.26 1.6698e-05 170086000.0 243434.0 258560.0 257650.0 260905.0 281311.0 306290.0 287102.0 269098.0 349620.0 311588.0 True False 242123.37839205985 267166.0132971794 293924.8804660535 293935.5462488075 317134.2883890707 285116.8932291062 273213.7794238531 289179.4592119563 263460.8356679803 291702.18707609177 0.8300362119976185 0.9158862193497646 1.0076197350874916 1.0076562990325924 1.087185158150168 0.9774245989960035 0.9366188925850738 0.9913517005497205 0.9031843000863597 1.0 18.15413667751213 4.532600564170544 2.7624330300679945 0.9894984021107474 0.8280443027174889 0.5419766891860194 0.0458452475541878 0.24459503898406298 3.2133356911248874 0.01196863032263922 0.07124900981161668 34087.92488293923 -4.532600564170544 -0.1614540993932585 DLFDFSTR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLFDFSTR 8 0 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0 U3KQC1 WDR18 WD repeat-containing protein 18 0 ;;; 185.84 0.00049009 1173340000.0 1539080.0 1993990.0 1863010.0 2030920.0 1820830.0 1849260.0 1811810.0 1697740.0 2069500.0 1939260.0 False True 1530793.7642878618 2060358.7517575899 2125305.614426792 2288034.263765083 2052701.9075950484 1721425.0088897992 1724165.8285136682 1824433.9797490377 1559499.4548792562 1815494.7665159833 0.8431826918595444 1.134874520024925 1.1706481635886783 1.260281387732075 1.1306570227873896 0.9481850571198791 0.9496947390393311 1.0049238441211312 0.8589941891553928 1.0 20.791931340645263 2.7384178128704155 24.997457407910023 0.9567913956907768 1.1213741950753051 0.3444281884486222 0.10642110564646325 14.816052302945776 2593381.497050484 0.03418418472017319 0.03416114869646443 547.5424726535673 -2.7384178128704155 0.16458279938452836 DLFDLILTCEER ddPTM_BT-474_Trastuzumab_2h_R1 4 DLFDLILTCEER 12 0 Q9NP77 Q9NP77 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 0 ;;; 233.84 1.2208e-15 126145000.0 171647.0 191004.0 169502.0 183903.0 156575.0 180175.0 177742.0 161228.0 215198.0 180011.0 False True 170722.8716237746 197361.4526756437 193366.4082622048 207185.1009440005 176513.8981572661 167719.92633632888 169143.94041962246 173259.65205919524 162165.3364054632 168522.54386482926 1.013056578119959 1.1711278986741733 1.1474216079796578 1.2294206827911534 1.0474200905657267 0.9952373284304078 1.0036873200495455 1.0281096409164436 0.9622768128609241 1.0 17.362582073241416 3.0441409586100234 7.6326625386877485 1.0042150880721583 1.1429478156312531 0.6197197016008156 0.052539627360485355 0.1463651163826601 21.301596688045773 0.014979754437699682 0.017876266151442013 1106.9830182625178 -3.0441409586100234 0.13873272755909483 DLFDLNS(ph)S(ph)EEDDTEGFSER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 DLFDLNS(1)S(1)EEDDTEGFSER;DLFDLNS(1)S(1)EEDDTEGFSER 221.86 3.7539e-19 578420000.0 421410.0 433250.0 348710.0 425140.0 418370.0 460970.0 447980.0 431190.0 568100.0 442450.0 True False 419141.17538305244 447670.464344844 397805.33695834526 478962.6804094135 471646.9396267318 429104.2289066604 426309.4959502119 463367.58733845444 428099.36714999046 414212.46219949774 1.0118989978171657 1.0807749770919057 0.9603895905158685 1.1563212701667338 1.138659462639663 1.035952000642584 1.0292049005152526 1.1186712849679594 1.0335260433178477 1.0 18.66001143427951 3.7474718172049477 24.998703128388406 1.078926997571191 1.0239965767051005 0.16413625581158497 0.055824094998694875 1180.4039831833732 3311398.4390491205 0.014205231847140629 0.025139272473288423 5590.772460349846 -3.7474718172049477 -0.05493042086609057 DLFDLNS(ph)SEEDDTEGFSER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 DLFDLNS(0.915)S(0.085)EEDDTEGFSER 276.26 1.9162e-39 153250000.0 102430.0 128290.0 107760.0 103360.0 104020.0 116850.0 113840.0 114760.0 138130.0 117780.0 True False 101878.5282610428 132560.05509705725 122931.67133328898 116445.36540226034 117266.33042515618 108772.43453531299 108333.12428896851 123323.97393947234 104089.71234717165 110263.17956346893 0.9239578312939922 1.2022150605656527 1.1148932202025599 1.0560675455148911 1.0635130502259473 0.9864801193466596 0.9824959221914197 1.1184510951680424 0.9440115255088961 1.0 16.750591583321214 3.157614771375 2.2630154286998554 1.0210175249673252 1.0894026639367715 0.12789137643145887 0.07775967506709151 0.6222385727333796 6.521297651225828 0.02408399539474581 0.03108005242793926 1437.5228985717874 -3.157614771375 0.06838513896944631 DLFDLNSS(ph)EEDDTEGFSER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 DLFDLNS(0.115)S(0.885)EEDDTEGFSER 350.33 1.0220999999999993e-90 151760000.0 115690.0 134850.0 124950.0 119800.0 112490.0 122970.0 126890.0 120780.0 131980.0 125910.0 True False 115067.13789436748 139338.4007314535 142541.87391513053 134966.66771662916 126814.93471953308 114469.37334024347 120751.84593312719 129793.21690841294 99455.29744139359 117874.3160030258 0.976184989199969 1.1820929737388823 1.2092699983215303 1.145004885654349 1.0758487431331332 0.9711137864613787 1.024411848379485 1.1011153346169253 0.8437401871230421 1.0 16.846889873740952 2.9991027180747722 3.6997190271858007 1.0065132914571102 1.136922621201423 0.3736794816168444 0.08390715114143867 0.2639632045024463 7.916016493026273 0.025979097290907104 0.029840624690447685 997.936064864094 -2.9991027180747722 0.13040932974431274 DLFDSMDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLFDSMDK 8 0 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ;; 149.65 0.0011673 406280000.0 696310.0 647170.0 574060.0 549500.0 545940.0 722110.0 735240.0 687430.0 912420.0 681390.0 False True 692561.1443273129 668710.6622274742 654882.6581810314 619066.6436584959 615462.222960102 672192.2353640985 699673.632310445 738729.5172988098 687566.3168016098 637903.1068326717 1.0856839179950548 1.0482950389562589 1.0266177592905399 0.9704712785179822 0.9648208581645047 1.05375287902528 1.0968337116031264 1.1580591305892258 1.0778538455715114 1.0 19.28297777944916 2.380810502435433 3.7979364682911876 1.1028507046533949 1.017796549054086 0.2292439947861531 0.0500744549148779 0.24865780248501865 6.888676133357399 0.01882305801771131 0.015476453916437065 240.3313922973333 -2.380810502435433 -0.08505415559930896 DLFDYS(ph)PPLHK ddPTM_BT-474_Trastuzumab_2h_R1 8 DLFDYSPPLHK 11 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK 139.64 2.5105e-05 10096040000.0 3209500.0 2868738.0 2513258.0 2299290.0 2398909.0 3086390.0 2847723.0 2964230.0 3774010.0 2877170.0 True False 3192220.408608974 2964222.210141256 2867102.8807698544 2590379.8782484834 2704395.841702372 2873035.1238805773 2709967.7591317114 3185435.894654949 2843955.8046430815 2693546.547330836 1.1851365300415164 1.100490434471476 1.0644341318738315 0.9616985757366676 1.0040278844938793 1.066636523035997 1.0060965019584118 1.1826177267333844 1.0558406007355965 1.0 21.36107556601153 4.614105495501711 2.2374803344548275 1.050859028023587 1.2001851332180966 0.3704572188118208 0.05701916144668321 0.5974998146757641 4.22075376616035 0.016155828811761395 0.15823065862932986 41124.96065887622 -4.614105495501711 0.14932610519450962 DLFEDELVPLFEK ddPTM_BT-474_Trastuzumab_2h_R1 7 DLFEDELVPLFEK 13 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;;; 241.54 1.5862e-16 804073400.0 2189510.0 2158655.0 1800468.0 1686503.0 1740273.0 2220523.0 2112882.0 2133078.0 2996937.0 2254178.0 False True 2177721.92143743 2230504.526740497 2053958.244451598 1900014.1068789505 1961886.4511437977 2067023.4715588992 2010673.8256669398 2292259.1119106123 2258382.0332483537 2110314.43014112 1.0319419183859735 1.0569536439133098 0.9732948868260577 0.9003464506243714 0.9296654674406046 0.9794860149919337 0.9527840007863106 1.086216859047552 1.0701637637464916 1.0 21.00902654124675 1.7445181820150235 12.056131197730526 1.0579043212094703 0.9735848508723006 0.3560087706642603 0.047356982695334365 0.09759425007415906 98.37775193282036 0.024394918951363493 0.01336576525149502 55.52878641129477 -1.7445181820150235 -0.08431947033716969 DLFEQFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLFEQFR 7 0 Q7RTS9-2;Q7RTS9 Q7RTS9-2 DYM Dymeclin 0 89.14200000000002 0.042085 87866000.0 112100.0 157640.0 151050.0 135150.0 121560.0 147920.0 145590.0 127580.0 189490.0 140610.0 False True 111496.46605548084 162886.95210460757 172316.52704986394 152259.97614275847 137039.94545743114 137694.638566226 138547.2554921901 137100.66743811333 142792.72853591223 131636.14941772263 0.8470049188514905 1.237402892937231 1.309036520834788 1.1566729717958402 1.041051003570156 1.0460245090372393 1.0525015818605905 1.0415122900856821 1.084753156086223 1.0 17.006196205334067 3.24050459801319 23.618812029790806 1.0466402244875856 1.1569137045892686 0.1299302040924939 0.11374689109684791 45.40833282448112 551680.0445134233 0.03198129824371127 0.041184689218630735 1739.8211179778325 -3.24050459801319 0.11027348010168292 DLFFELDAMDHLESFIAECDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLFFELDAMDHLESFIAECDRR 22 1 Q9NQ29-3;Q9NQ29;Q9NQ29-2;A8MYV2 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 0 199.16 1.1687e-22 36985000.0 18704.0 25368.0 20493.0 23502.0 21988.0 20593.0 20876.0 25318.0 28069.0 24479.0 False True 18603.29974220975 26212.358544720155 23378.23627165083 26477.350790285658 24788.04146691343 19169.45438070778 19866.148125935575 27207.357722199016 21151.771055330195 22916.729262473702 0.8117781350531892 1.1438088849634869 1.0201384326659935 1.1553721513672763 1.0816570367877065 0.8364829972529234 0.8668840958236796 1.1872269122955188 0.92298385223612 1.0 14.484113533001842 DLFNGLDS(ph)EEEKDGEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLFNGLDSEEEKDGEEK 17 1 Q96S90;Q96S90-2 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 DLFNGLDS(1)EEEKDGEEK;DLFNGLDS(1)EEEKDGEEK 114.37 0.00022216 86018000.0 210960.0 113711.0 89179.0 89242.0 89032.0 161719.0 147272.0 149680.0 277960.0 136943.0 True False 209824.2147998594 117495.80189524897 101734.62804223626 100540.02804981159 100369.69746599227 150539.74617557798 140147.890726326 160849.88165963948 209460.4824731762 128203.18049719906 1.6366537396819383 0.9164811780766701 0.7935421543185422 0.7842241328171118 0.7828955340790872 1.1742278591822215 1.093170155239541 1.2546481377125716 1.6338165844314012 1.0 16.96807252758395 2.0064581976311064 1.6689091987694853 1.326929564161033 0.9702241162411018 0.16482341615154283 0.28016194452297233 0.5879997082457648 3.0597156603905273 0.17763800254396284 0.08790045516221451 101.49816663213134 -2.0064581976311064 -0.3567054479199312 DLFPYEESK ddPTM_BT-474_Trastuzumab_2h_R1 7 DLFPYEESK 9 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 ;;;;;; 161.92 0.00014929 2078360000.0 3556020.0 3301220.0 2949540.0 2770349.0 2736010.0 3602300.0 3551980.0 3501190.0 5123190.0 3454140.0 False True 3536874.783430966 3411099.112070367 3364809.594138732 3121074.8993497198 3084424.6558982087 3353281.47990208 3380157.1575187086 3762466.5764825833 3860648.4717288497 3233693.827961962 1.093756852565131 1.0548614969587937 1.0405467472037715 0.9651732864631712 0.9538394232709934 1.0369817485211603 1.0452928871281097 1.1635197321243862 1.193881881563916 1.0 21.624751657600385 1.8724059318212496 4.593257343816883 1.1343030805492185 1.021895924884738 0.31745202643956294 0.0610028698291751 0.22875055932039245 7.135618070425314 0.028911772829701057 0.01661359303617793 74.54283947604705 -1.8724059318212496 -0.11240715566448056 DLFSLDSEDPSPAS(ph)PPLR ddPTM_BT-474_Trastuzumab_2h_R1 7 DLFSLDSEDPSPASPPLR 18 0 Q9BTK6;H3BTX0 Q9BTK6 PAGR1 PAXIP1-associated glutamate-rich protein 1 1 DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPS(0.003)PAS(0.997)PPLR;DLFSLDSEDPS(0.013)PAS(0.987)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPS(0.006)PAS(0.994)PPLR 269.85 4.7558999999999986e-32 6341682000.0 993314.0 1117231.0 1011686.0 1062511.0 999159.0 1076486.0 1118708.0 1015196.0 1259320.0 1151382.0 True False 987966.1077915606 1154417.3584545988 1154122.5950676494 1197024.7836582928 1126395.976170627 1002071.0565954729 1064591.8201604292 1090955.080580834 948977.4600234578 1077899.8150122752 0.9165658014147721 1.0709876209056146 1.070714160067377 1.110515807672405 1.0449913437992375 0.9296513856290635 0.9876537738790738 1.0121117615818591 0.8803948630538087 1.0 20.039791662904673 2.7991195248157057 9.078439972376662 0.968992457976242 1.049788851102432 0.3119346616409431 0.05908486681643234 0.5612933766308374 80.83905679277804 0.018059966981156902 0.01914952037348282 629.6794569106958 -2.7991195248157057 0.08079639312619002 DLGDEYGWK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGDEYGWK 9 0 Q9HD45;Q5TB53 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 ; 149.94 0.00020109 614980000.0 1263680.0 1220380.0 1134220.0 976320.0 1108050.0 1313200.0 1168320.0 1106440.0 1335260.0 1034310.0 False True 1256876.4872880455 1260999.610564712 1293908.3171830291 1099922.011895656 1249153.5995731028 1222421.574940292 1111803.8981841833 1189008.171188479 1006203.0645673244 968299.450282657 1.2980245800213452 1.3022826876506153 1.3362687718198367 1.1359316702850308 1.290048857518675 1.2624416698609648 1.1482025502127835 1.2279343655946462 1.0391445169917248 1.0 19.885093749859912 1.2766840433067845 0.49065032032954403 0.9845869339150191 1.2933728266987374 0.6995618911740794 0.061018549523371136 0.4973989266663901 0.32074919847688405 0.06599951542341163 0.03705488466172836 18.909674068369704 -1.2766840433067845 0.3087858927837184 DLGDSHPVLYQSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGDSHPVLYQSLK 14 0 A0A1B0GVL3;Q05086-2;Q05086-3;Q05086;A0A0D9SG77 A0A1B0GVL3 UBE3A Ubiquitin-protein ligase E3A 0 104.17 0.0012991 0.0 211780.0 250420.0 174820.0 169210.0 147610.0 185530.0 217570.0 200410.0 283300.0 225350.0 False True 210639.8000109698 258755.07831791305 199433.1364373201 190631.9686505078 166407.2585469843 172704.74779064316 207045.30790188714 215365.6118613596 213484.51102551012 210967.97006815867 0.9984444555394696 1.2265135709193937 0.9453242422197458 0.9036062137248569 0.7887797303696011 0.8186301822729128 0.9814063615201671 1.0208450685276071 1.0119285451556386 1.0 17.686664454736608 4.138078838237213 8.382783409255362 0.9307434308275007 1.1116893973970712 0.3852461348386639 0.09033753947136716 0.24471909008370307 18.03661775909117 0.024385161584247084 0.05303751378460187 13742.914298977954 -4.138078838237213 0.18094596656957052 DLGEELEALK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGEELEALK 10 0 P35579;P35749;P35749-2;P35749-4;P35749-3 P35579;P35749 MYH9;MYH11 Myosin-9;Myosin-11 0 ; 166.33 1.2986e-05 44918000.0 126000.0 95389.0 79852.0 76294.0 76108.0 113334.0 96092.0 105600.0 126710.0 111004.0 False True 125321.62999991598 98563.96520113171 91094.46751397358 85952.81257739986 85799.90267254178 105499.48733953942 91443.66285291236 113480.40822593475 95484.01832701155 103919.62968469437 1.2059476191375782 0.9484633990727984 0.876585759498624 0.8271085341450103 0.8256371094938445 1.0152026874964677 0.879946003756598 1.0920016609975325 0.918825621460762 1.0 16.665108669332483 -0.33571772284504864 8.219275413913401 1.0000095278542858 0.9531126260697539 0.0139002129666701 0.1147191535857353 0.0 0.0 0.11173129338404618 0.02633531840753424 0.4616175133029734 0.33571772284504864 -0.046896901784531875 DLGEELEALKTELEDTLDSTAAQQELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGEELEALKTELEDTLDSTAAQQELR 27 1 P35579 P35579 MYH9 Myosin-9 0 90.968 0.0059308 1182400000.0 23778.0 20449.0 20748.0 17275.0 17254.0 26737.0 24718.0 21919.0 35649.0 21202.0 False True 23649.981889984163 21129.632603318452 23669.138055151092 19462.013228754357 19451.194627529763 24888.734122128073 23522.29590807028 23554.70708242675 26863.78162212642 19848.87020805456 1.191502672045643 1.0645257076014416 1.1924677730799151 0.9805098741013875 0.979964825385204 1.2539118781696887 1.185069762737683 1.1867026604299313 1.3534161562115132 1.0 14.276769271470627 2.7228370752840947 24.88391908275953 1.2045368156093124 1.081356433693911 0.2223558373538922 0.1059937655124326 1093.60699154825 1730729.026832777 0.033139155956382504 0.0313471016704517 528.2470437651723 -2.7228370752840947 -0.12318038191540137 DLGEELEALRGELEDTLDSTNAQQELR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLGEELEALRGELEDTLDSTNAQQELR 27 1 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;A0A0C4DFM8 Q7Z406 MYH14 Myosin-14 0 ;;; 153.24 5.536400000000001e-08 230671000.0 97270.4 100643.0 91874.0 100531.0 87402.4 104521.0 110209.0 98027.0 132518.0 116164.0 False True 96746.7069741574 103992.84141502164 104809.06061687651 113258.21429232445 98532.57756538819 97295.70928596897 104877.76963073546 105342.2725110199 99860.71455022438 108750.31406699611 0.8896223225116955 0.9562532513787169 0.9637586936283091 1.0414518363832148 0.9060440736261851 0.8946706050525014 0.9643904988276636 0.9686617773455194 0.9182567922397423 1.0 16.73066004185559 -1.3359727404506443 3.5922255237141836 1.0002087188076885 0.9483263390489568 0.12355260199250961 0.043199544016784414 3303323887.0760503 28613815.857953463 5807006.207606953 0.010491253556624051 0.046134653118862265 1.3359727404506443 -0.05188237975873167 DLGEIHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGEIHSR 8 0 A0A0D9SEU2;A0A0A0MTN6;G5E931;H3BN57;Q8TDH9-2;Q8TDH9 A0A0D9SEU2 BLOC1S5;BLOC1S5-TXNDC5 Biogenesis of lysosome-related organelles complex 1 subunit 5 0 101.65 0.008667200000000002 0.0 181030.0 219380.0 188180.0 191670.0 200400.0 208510.0 204010.0 174910.0 242230.0 200330.0 False True 180055.3545943236 226681.93068198935 214674.10831011846 215935.40234763213 225919.7521361399 194096.1944797446 194141.25690611757 187962.6723749835 182535.66221570515 187544.767888858 0.9600659971544887 1.2086817096189248 1.144655277386025 1.1513805731738613 1.2046177276991459 1.034932601237743 1.0351728768097053 1.0022282918944085 0.9732911468043655 1.0 17.51687548978976 2.5767296347463415 5.304785459996369 1.0072581832520033 1.1392985654327685 0.4754222194016188 0.0659458155138032 0.19163709768880194 8.159067943706937 0.020953815472707523 0.01958134912660822 377.3372106599949 -2.5767296347463415 0.1320403821807652 DLGGFDEDAEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGGFDEDAEPR 12 0 A0A5F9UP49;Q9BRK5;A0A5F9UJX7;Q9BRK5-6;G3V1E2;Q9BRK5-4;Q9BRK5-3;H0Y3T6 A0A5F9UP49 SDF4 45 kDa calcium-binding protein 0 135.8 0.00028233 141340000.0 180600.0 228410.0 227920.0 219150.0 214980.0 234260.0 207300.0 226820.0 275820.0 214480.0 False True 179627.6696665463 236012.48877323946 260009.15488384597 246894.36753004455 242356.42871370947 218066.15758872428 197272.10703709736 243746.4601686226 207847.85679864546 200791.70277443377 0.8945970734076457 1.175409568782691 1.2949198163628113 1.2296044314510435 1.2070042006963249 1.0860317163289182 0.9824714084859858 1.2139269541552897 1.0351416613670459 1.0 17.615340129116447 2.7166399008703213 18.281385643324974 1.0811794946285282 1.1724742340635983 0.13724804686712766 0.11522662307972358 59.174722533924495 49347.99940911344 0.038217330566797506 0.03613517587010373 520.7627369903269 -2.7166399008703213 0.09129473943507005 DLGHAQMVVDELFSSHSDLDSDSELDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGHAQMVVDELFSSHSDLDSDSELDR 27 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 0 61.109 0.026707 28501000.0 2077.9 3315.8 2881.9 2510.4 3203.4 5538.2 3870.4 2900.7 2878.1 4088.1 False True 2066.712817276392 3426.164398556574 3287.6464700761485 2828.2163826028877 3611.3340019606376 5155.357269520506 3683.173965636186 3117.1649634561463 2168.8308195641403 3827.1939580015005 0.5400073369564986 0.8952157732673841 0.8590226955189135 0.7389791094046713 0.9435983756220232 1.3470331856952844 0.9623692987745729 0.8144779171536631 0.5666895494098944 1.0 11.90207130172709 4.740378385706277 5.474012342283428 0.9052388666461545 0.5261006493481547 0.24711540104677532 0.19014099320894348 0.2327347914148048 26.677552318970058 0.048048776559567 0.3305171815042221 55001.98783843334 -4.740378385706277 -0.3791382172979998 DLGHNDK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLGHNDK 7 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 0 ;; 116.73 0.0053911 574710000.0 1642600.0 1424890.0 1230420.0 1114740.0 1129700.0 978620.0 1414370.0 1288450.0 2038090.0 1648910.0 False True 1633756.4241100182 1472316.6022858075 1403652.4409976392 1255865.969703133 1273560.5987435018 910970.3028236903 1345951.5196819063 1384600.6816165322 1535830.0285068203 1543675.1520971234 1.0583550702947553 0.9537735969161818 0.9092926313484675 0.8135558624474883 0.8250185260890778 0.5901308326341285 0.8719137040285941 0.8969508123101648 0.9949178921616731 1.0 20.55793775601914 4.433680284378341 1.6153382989679297 0.845032900651072 1.0724339307664554 0.24576949972676976 0.10855262599924358 0.8095893478636055 3.1053772652110463 0.030632412770936913 0.24215977905664543 27144.402370630432 -4.433680284378341 0.22740103011538348 DLGHPVEEEDELES(ph)GDQEDEDDES(ph)EDPGKDLDHI ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 2 DLGHPVEEEDELES(1)GDQEDEDDES(1)EDPGKDLDHI 107.2 1.9036e-05 218620000.0 47403.0 43846.0 42698.0 31852.0 45677.0 37901.0 41824.0 44157.0 59065.0 34968.0 True False 47147.787514968426 45305.3876045333 48709.50726233093 35884.45993414088 51493.69520120993 35280.99307935731 39800.81333680441 47452.21956470267 44509.22218045094 32736.312302389015 1.4402290361681238 1.3839490284074247 1.4879350738224792 1.0961668376899656 1.5729839917690438 1.0777326643716858 1.2158001478346063 1.4495285579628259 1.3596284691236515 1.0 14.998604193032191 -2.2409662657248783 1.9328415633754963 3.6383990031510854e-05 1.3421709059918128 0.3020944048918224 0.15624605881170298 1816420.665348249 279379.6002619585 7929546.692357181 0.038072449205150266 0.005741610590320768 2.2409662657248783 1.3421345220017813 DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_BT-474_Trastuzumab_2h_R1 7 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI 458.59 1.850499999999998e-256 26255820000.0 1923000.0 1556191.0 1320498.0 1335757.0 1419032.0 1814978.0 1637770.0 1531183.0 2363809.0 1640571.0 True False 1912646.7816653857 1607987.876697675 1506412.640425627 1504863.6992417497 1599737.3139383805 1689512.842858653 1558544.8082110318 1645447.650649732 1781279.9453678092 1535868.3542165041 1.2453194809402062 1.0469568386399637 0.9808214592676443 0.9798129475813239 1.0415849180996102 1.1000375378660159 1.0147645818290825 1.0713468026946409 1.159786866157873 1.0 20.550623131178558 1.476335266577273 11.417009780847428 1.0917347946185665 1.0524824751324156 0.003728506933441844 0.08030091982381127 0.3046719796857994 219.43336593129106 0.04311519754833868 0.019935434117738342 29.945754963865493 -1.476335266577273 -0.03925231948615093 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ; 322.92 3.3068999999999984e-105 1365690000.0 671450.0 539400.0 524877.0 401543.0 469150.0 641570.0 583130.0 533300.0 788430.0 577940.0 False True 667834.987805108 557353.602925814 598775.119287331 452378.30262886826 528893.47163009 597219.7759933323 554921.7741270744 573097.5540425291 594131.9909207304 541055.3744006726 1.2343191092868622 1.0301230323110548 1.1066799215340843 0.8361035192192074 0.9775218889858467 1.103805274376718 1.0256284298843932 1.0592216271344677 1.0980983075509614 1.0 19.045416728904815 4.989779573645809 1.9568831820770112 1.0241191982871864 1.4367965165407308 0.39755796060477155 0.07640155556239533 2.0703729465935137 4.563947966414022 0.019986640136094178 1.9415173818095002 97674.13496275035 -4.989779573645809 0.41267731825354437 DLGKMAHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGKMAHIR 9 1 A0A1W2PS94;A0A2R8Y358;Q9BXT5 A0A1W2PS94 TEX15 Testis-expressed sequence 15 protein 0 ; 81.594 0.019006 238122000.0 145051.0 195012.0 210985.0 175268.0 140715.0 177767.0 212410.0 137713.0 240060.0 180986.0 False True 144270.0615326811 201502.8565327567 240689.8540855049 197456.91082936685 158634.2211668513 165478.3857085067 202134.91681500146 147989.84335244467 180900.42963919518 169435.31853008986 0.8514757299969918 1.189261237154472 1.420541219939106 1.1653822387349582 0.9362523855301136 0.9766463518001388 1.1929916298950654 0.8734297231315636 1.0676665951855204 1.0 17.3703751080043 3.28920169209233 9.07608674225114 1.0041998125280724 1.178390597869458 0.18346748502056176 0.15097765698749466 0.4954167953265764 82.93756642746592 0.042416395727411425 0.05731572888760152 1946.2637423531323 -3.28920169209233 0.17419078534138555 DLGLAFEIPPHMK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGLAFEIPPHMK 13 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 106.01 0.00094043 0.0 188480.0 196780.0 171560.0 193240.0 172410.0 202150.0 178790.0 168600.0 255300.0 199670.0 False True 187465.2446220967 203329.7033439779 195714.15677374808 217704.16418665627 194365.3915458678 188175.8463099148 170141.24465587357 181181.7881334526 192384.73584473244 186926.8896539127 1.002880029562257 1.0877498883142727 1.047009112151305 1.1646487275839577 1.03979364288213 1.0066815248374084 0.9102020847342133 0.9692655158864681 1.0291977585510823 1.0 17.51211459183431 2.7339563462577043 3.0430043573862577 0.971582385949292 1.075933386658602 0.4471110781124328 0.04812504463567938 0.21528681340806524 4.074134370199364 0.01604251295317049 0.015974258227503143 541.946413130806 -2.7339563462577043 0.10435100070931003 DLGLPTEAYISVEEVHDDGTPTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGLPTEAYISVEEVHDDGTPTSK 24 0 P51665;H3BNT7;H3BTM8 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 ; 329.34 8.821899999999997e-87 899170000.0 1444030.0 1405420.0 1261230.0 1164400.0 1236090.0 1573200.0 1527960.0 1374240.0 1933050.0 1609180.0 False True 1436255.5029268165 1452198.5551056692 1438800.2211923166 1311812.9206113783 1393498.7346205676 1464448.3869144607 1454046.7374259697 1476792.7670493233 1456675.7290429303 1506480.7547116904 0.9533845675988648 0.9639675452631921 0.9550737483318688 0.8707797404703205 0.9250026794316764 0.9720989679650612 0.9651943663258045 0.9802931517249627 0.9669394876018236 1.0 20.522750811948317 2.712092572240139 9.126439254808735 0.9751573180754971 0.9330257524247838 0.41337015089872176 0.025722486890394303 0.4318308561801808 142.59698196941818 0.00894117301934901 0.008527012011813564 515.3384800861875 -2.712092572240139 -0.0421315656507133 DLGLSESGEDVNAAILDESGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGLSESGEDVNAAILDESGKK 22 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 303.23 9.4454e-56 625090000.0 808640.0 718570.0 610580.0 609570.0 611790.0 909650.0 896470.0 838520.0 1409130.0 813060.0 False True 804286.3720883501 742487.1680652627 696544.3567435005 686741.4994993801 689697.8301365732 846768.0365857728 853104.3212520333 901094.6203182847 1061868.79287461 761169.8147043133 1.0566451224826696 0.9754553500701968 0.9150971876283382 0.9022185144929245 0.9061024449642628 1.1124561434621671 1.1207805469577552 1.183828631812373 1.3950484798022467 1.0 19.537858825013714 2.439530874896589 1.9528068917240986 1.1971244963405265 0.9481129578121443 0.5213496551983856 0.10127152307582184 0.24970290573314394 1.9388145795871539 0.04241880450449172 0.03325511461073787 275.1255190482833 -2.439530874896589 -0.2490115385283822 DLGMMIHEQGDVIDS(ph)IEANVENAEVHVQQANQQLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR 36 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 DLGMMIHEQGDVIDS(1)IEANVENAEVHVQQANQQLSR;DLGMMIHEQGDVIDS(1)IEANVENAEVHVQQANQQLSR;DLGMMIHEQGDVIDS(1)IEANVENAEVHVQQANQQLSR 414.15 6.1718999999999935e-199 147566000.0 45620.9 58582.8 63122.8 56719.9 69080.9 59356.1 51812.1 51732.9 65534.6 44809.8 True False 45375.28214335848 60532.69308394954 72009.94156678687 63900.63352437761 77877.94314042656 55252.95251623023 49305.75078155709 55593.47169234335 49384.47594864947 41950.00020040011 1.0816515357948844 1.4429724146550111 1.7165659409484357 1.5232570493234026 1.8564467882811544 1.3171144756205089 1.1753456625987533 1.3252317384211387 1.1772223054287008 1.0 15.356383197106473 2.4910719806574733 23.47321436134793 1.2141631226010325 1.5359519187511836 0.3988871468554227 0.20288101733382777 323.64096325917296 544553.6365828352 0.06801132112872377 0.06169794597481867 309.79327129584954 -2.4910719806574733 0.3217887961501511 DLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR 36 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 0 ;;; 171.03 4.5284e-18 155485500.0 28925.0 23206.9 25724.1 25162.3 26805.7 33559.8 27063.5 23795.0 33305.0 26902.9 False True 28769.271013869613 23979.32763763272 29345.829682114534 28347.844600051252 30219.24700516831 31239.890017271744 25754.335112390167 25570.703728561737 25097.4290141356 25185.933889268505 1.1422753327454709 0.9520920583314201 1.1651674228613187 1.1255427225642807 1.1998461974064203 1.2403705240639409 1.022568201188039 1.015277171812842 0.9964859403061239 1.0 14.620330606373898 2.072668999245321 12.483459120611458 1.0089422407719109 1.1326481827631678 0.4432193993958671 0.0708493847021637 0.7568949723971804 127.70996850470776 0.028264771526018445 0.020874153372275488 118.21402353624518 -2.072668999245321 0.12370594199125695 DLGNLVLRPFGLSTENFQIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGNLVLRPFGLSTENFQIK 20 1 Q99614;H0YB37 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 106.42 0.00022036 133010000.0 132950.0 172760.0 145210.0 154740.0 157570.0 171370.0 158430.0 136570.0 174900.0 159360.0 False True 132234.21197213355 178510.2121643745 165654.30581205367 174330.06813415047 177635.60550943905 159523.59526158858 150766.1356386268 146761.54688840837 131798.2385399285 149189.50836503986 0.8863506115227637 1.1965332825388242 1.1103616308375213 1.1685142611208035 1.190670895401014 1.069268187889346 1.0105679500580511 0.9837256553544589 0.8834283320878165 1.0 17.186786557201966 2.115638335245243 1.8746064283864932 0.952536289222895 1.1184576016872734 0.37499606903595417 0.08742706858078993 0.3442891566381372 2.3379405133377293 0.046737568706614004 0.026493181084531168 130.5083608990516 -2.115638335245243 0.16592131246437836 DLGQPAAAAGHFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGQPAAAAGHFQR 14 0 P23610 P23610 F8A1 Factor VIII intron 22 protein 0 ; 112.24 0.00060531 687870000.0 308220.0 362840.0 346410.0 383990.0 334370.0 413770.0 420450.0 346190.0 434520.0 416930.0 False True 306560.5777664612 374916.91005858843 395181.51695030375 432603.0946286181 376950.0375337383 385167.053809812 400111.2272250242 372024.4557172007 327438.3682696956 390321.1704482689 0.7854059707148042 0.9605343969121909 1.0124521723903752 1.1083259822463385 0.9657432547172004 0.9867951906566135 1.025082054261909 0.953123949925506 0.8388947181462005 1.0 18.574302189000573 4.729055934115525 3.6160693708627774 0.9883989403104911 0.7644409425389659 0.46872560051309164 0.06371120454585619 0.23691597167936504 5.686145835393614 0.015828396965598884 0.14166222893849484 53586.56688487161 -4.729055934115525 -0.22395799777152525 DLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 DLGSTEDGDGT(1)DDFLTDKEDEK 210.22 7.673100000000002e-23 70322000.0 96416.0 54761.0 50214.0 49382.0 47135.0 66412.0 50308.0 78504.0 149520.0 77318.0 True False 95896.90696882458 56583.68678127647 57283.6947320878 55633.75613674946 53137.362858966924 61821.094757032144 47874.4098447771 84362.3671152347 112672.79946535229 72383.49904472983 1.3248448642910242 0.7817208000170071 0.7913916222354627 0.7685972199599005 0.73410878943736 0.854077180198617 0.6613994967995788 1.1654916967070414 1.5566089088305255 1.0 16.143373229349777 1.5780000557087044 5.238000049078497 1.3025120063409814 0.8350695055213472 0.42639060969912446 0.21165621616605268 0.11926847738352399 6.974855212678117 0.11328331685440549 0.05179863279034744 37.844263326145274 -1.5780000557087044 -0.46744250081963423 DLGTESQIFISR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLGTESQIFISR 12 0 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;; 162.68 0.00047697 104780000.0 410920.0 532803.0 496647.0 507911.0 473407.0 430032.0 428309.0 459131.0 467156.0 518909.0 False True 408707.6523775036 550537.025768785 566570.5806668898 572212.4805227126 533692.5753468742 400304.9000264419 407590.05737072905 493393.6866399774 352031.6633696897 485791.78335965355 0.8413226949845689 1.1332777634923432 1.166282757498663 1.1778965806407595 1.0986035450331146 0.8240256705414017 0.8390221311523743 1.0156484805645545 0.7246554499853795 1.0 18.889978562997396 2.7498817092073553 24.048864775424693 0.8893172020240305 1.0960893071862017 0.4206115642090389 0.11833479319261653 429.78479398352096 912970.562938434 0.03608913395115674 0.03794388334828645 562.188178545538 -2.7498817092073553 0.20677210516217115 DLGVLDVIFHPTQPWVFSSGADGTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGVLDVIFHPTQPWVFSSGADGTVR 26 0 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ; 170.16 7.3691e-12 505770000.0 191488.0 196400.0 218310.0 228770.0 213610.0 216977.0 241510.0 202140.0 258330.0 222140.0 False True 190457.0498843167 202937.05527369288 249046.1504154636 257732.25854368368 240811.96733433593 201977.8906989185 229827.23864220653 217224.71324612192 194668.03294465254 207962.83501637774 0.9158225308349811 0.9758332793343144 1.197551237440336 1.2393188356149618 1.1579567441238778 0.9712210870899701 1.1051361106137398 1.0445362183537015 0.9360712597004258 1.0 17.665966202186414 1.431307537585917 4.080255926726209 0.9695767653360523 1.085280719792707 0.16530928117254928 0.09896549237321511 0.4010674241285726 11.91277736495487 0.07657916532764096 0.02758235267953552 26.996504631608875 -1.431307537585917 0.11570395445665471 DLGYIYFYQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLGYIYFYQR 10 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ; 179.68 4.8399e-06 909670000.0 431430.0 590820.0 620650.0 490240.0 342500.0 459050.0 509260.0 375000.0 761340.0 494950.0 False True 429107.2288163794 610485.0865417683 708032.1252134927 552304.3337345601 386115.3448434531 427316.9539874664 484625.1482378783 402984.40421141655 573717.9584333287 463361.8672519864 0.9260736783569231 1.3175125742701073 1.5280327865832972 1.1919503368070743 0.8332911534851767 0.9222100137883854 1.045889147313731 0.8696969532718685 1.2381639469726329 1.0 18.821779795743343 3.4094071499214516 6.692034212029338 0.9738130100599669 1.278840210633142 0.3472347431860505 0.17241711270087443 0.20657110059019093 16.225516710731004 0.047545409954025425 0.0646932788812875 2566.889360796165 -3.4094071499214516 0.3050272005731751 DLHILPPPLIPT(ph)PPPDDPR ddPTM_BT-474_Trastuzumab_2h_R1 5 DLHILPPPLIPTPPPDDPR 19 0 Q9NRS6;E9PK26;E9PMW6;Q9NRS6-2 Q9NRS6 SNX15 Sorting nexin-15 1 DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR 123.43 0.00011496 538919000.0 302929.0 368602.0 336314.0 364310.0 345185.0 346625.0 341344.0 227538.0 377328.0 334366.0 True False 301298.0639225758 380870.6947453858 383664.0879063084 410431.6086464545 389142.2636782114 322663.6296174835 324831.8866592906 244518.04097455248 284340.57033615874 313026.47561486554 0.9625322054013096 1.2167363607096062 1.2256601846623107 1.3111721870818114 1.24316086335456 1.0307870252306552 1.0377137781116954 0.781141724495525 0.9083594918852783 1.0 18.25592515914396 2.297643807439712 1.8971428535197437 0.8831103515557185 1.198419439111661 0.5729957556851544 0.10586721131596358 0.21917020832694417 1.603070590389393 0.05087464627349369 0.03470492547886865 198.4466662251129 -2.297643807439712 0.31530908755594245 DLHPDLEGQLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLHPDLEGQLK 11 0 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ;;; 175.49 9.7659e-06 1422610000.0 3962170.0 4510170.0 4073090.0 3868560.0 4045590.0 4605520.0 4799720.0 4409190.0 6085100.0 4524310.0 False True 3940838.116958467 4660288.281994658 4646545.668067062 4358319.299347611 4560771.906409417 4287151.242627945 4567539.206889031 4738226.147213153 4585508.641162486 4235564.662343332 0.9304162328094864 1.1002755602877154 1.0970309837027385 1.0289818824147914 1.0767801391293514 1.012179386787138 1.078377871903869 1.118676380823265 1.0826203839904422 1.0 22.014122883925026 2.028338757144184 24.142659420267965 1.0848456850688015 1.0471090768119866 0.03058293784806443 0.054509999243341045 339.19537976420463 288968.89019032987 0.019629260933800366 0.014496862734195374 106.74284090544967 -2.028338757144184 -0.03773660825681491 DLHQGIEAAS(ph)DEEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLHQGIEAASDEEDLR 16 0 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 DLHQGIEAAS(1)DEEDLR 264.63 3.2245000000000003e-27 293920000.0 216830.0 263840.0 220200.0 218920.0 233350.0 252450.0 253640.0 163760.0 249810.0 229740.0 True False 215662.6113720777 272621.75490535167 251202.24598728915 246635.24955362652 263065.73932618933 234998.7257033785 241370.4642011061 175980.60275643083 188247.67278250144 215077.79650969032 1.0027190852420744 1.2675495068737543 1.167959919916565 1.1467257594975147 1.223118999707331 1.0926219698963238 1.1222472431747792 0.8182183638305129 0.8752538655194003 1.0 17.7144990707052 1.8138011578439792 5.616896477117324 0.8844249710339563 1.1545916041189326 0.6717990237957441 0.07936427410278023 0.11013656056786483 5.6673522984430225 0.03479749800561386 0.020102965223287243 65.13301136484169 -1.8138011578439792 0.27016663308497624 DLHQGIEAASDEEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLHQGIEAASDEEDLR 16 0 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 0 200.67 3.4946e-11 686040000.0 257810.0 306120.0 296910.0 332420.0 291950.0 344580.0 326710.0 222780.0 358920.0 318100.0 False True 256421.97960538362 316309.01914655266 338712.3472120161 374504.3379162098 329128.1019767767 320759.9956540709 310905.789146599 239404.9748539182 270468.97528159595 297798.58566088864 0.861058419858912 1.0621575600991684 1.13738736018618 1.2575759454501512 1.1052037109120587 1.077103824862785 1.0440136525719967 0.8039157550819773 0.9082278704627105 1.0 18.18397737656076 1.906480562480718 5.4557123949537045 0.8879528351189382 1.0914222598183223 0.3782616803686083 0.10208720597418516 0.21673341028944965 9.773095429658841 0.04760872738987559 0.02855682134625916 80.62701146848094 -1.906480562480718 0.20346942469938412 DLHSLLMEIQALR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLHSLLMEIQALR 13 0 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 0 114.56 0.00073315 26121000.0 17832.0 21215.0 21877.0 22163.0 19631.0 24775.0 23909.0 19448.0 30205.0 22437.0 False True 17735.99449332146 21921.12845026169 24957.091441707173 24968.833527576404 22130.89148794695 23062.362564076873 22752.430328750415 20899.30851494298 22761.382476263785 21005.05145071787 0.8443680576043204 1.0436122235498029 1.1881471226224602 1.1887061351008053 1.0535985374694525 1.0979436359956496 1.0831885073993868 0.994965833051017 1.083614697620076 1.0 14.358448699180336 -0.5628202091523229 7.728560714715829 0.9999999949832998 1.067184423602884 0.04034815098472444 0.0929917186444214 0.0 0.0 0.09177498451518824 0.02163157129799334 0.2736401317465847 0.5628202091523229 0.06718442861958418 DLIALANTAGEVLLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLIALANTAGEVLLHR 16 0 Q9UJX5;Q9UJX5-3;D6RFM7;D6RAP6;Q9UJX5-2 Q9UJX5 ANAPC4 Anaphase-promoting complex subunit 4 0 ; 116.83 0.00039752 133075000.0 175188.0 226652.0 209216.0 210930.0 213701.0 208963.0 219633.0 172893.0 244772.0 236807.0 False True 174244.80727321646 234195.9748059729 238671.79426192862 237633.71637286004 240914.5556449363 194517.87965599186 209008.51271046212 185795.15359286484 184451.22037676026 221693.77451932733 0.785970682537257 1.056394007065614 1.076583204825723 1.0719007193056884 1.0866996881950481 0.8774169688695238 0.9427802524614451 0.8380711366194324 0.8320090213479574 1.0 17.758208732255028 2.724313018916093 24.464349744032628 0.8877877862037022 1.0243068237244572 0.27609460168011835 0.0938247832767411 703.2376155536454 1207517.1588000613 0.03018757177578095 0.028585030188285745 530.0453378526662 -2.724313018916093 0.136519037520755 DLIDEGHAATQLVNQLHDVVVENNLSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLIDEGHAATQLVNQLHDVVVENNLSDK 28 0 P35249;H7C1P0 P35249 RFC4 Replication factor C subunit 4 0 139.67 8.0289e-08 397580000.0 116330.0 87818.0 96232.0 83928.0 61872.0 109240.0 117510.0 79578.0 170620.0 122870.0 False True 115703.69220547815 90740.969042898 109780.62913646149 94553.27619466826 69751.0324559245 101688.49592330004 111825.59236820707 85516.51444889615 128572.98719086671 115028.3314057006 1.0058712561638017 0.7888575617328396 0.9543790455350459 0.8219998937581943 0.6063813288737993 0.8840300009625327 0.9721569547401536 0.7434387111752723 1.1177506064779346 1.0 16.811629714254497 1.232029654630942 24.999385384287127 1.0588753726990234 0.8425120471789407 0.34890734079510466 0.11555841305664816 178.21478395435085 682143.864652339 0.09970970840744511 0.027246199010296488 17.061988882290215 -1.232029654630942 -0.21636332552008275 DLIDFDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLIDFDDR 8 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 178.99 0.00057395 7416900000.0 7975600.0 8560300.0 7607100.0 7385600.0 7233500.0 9082800.0 8785200.0 7415800.0 9064700.0 8342100.0 False True 7932660.255772469 8845224.410689376 8678113.55790147 8320616.202737372 8154643.348686477 8454927.414611407 8360226.313276936 7969204.652669379 6830826.145756947 7809700.035968878 1.0157445509094174 1.1325946412731882 1.111196783222527 1.0654207158297226 1.0441685738413646 1.0826187146331903 1.0704926277286602 1.0204239107732531 0.874659220494569 1.0 22.89683570604854 1.4887000250913134 3.6837597863409965 0.9373971031531182 1.0762506252097919 0.6232642912400634 0.04204856394583857 0.12020977054981086 3.3347878633206296 0.02759293359653517 0.010433043769917627 30.810590729075642 -1.4887000250913134 0.13885352205667367 DLIDFDDRQQIYAAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLIDFDDRQQIYAAEK 16 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 216.19 1.4050999999999999e-14 203200000.0 102500.0 151250.0 141580.0 135400.0 142360.0 177930.0 191180.0 144990.0 232830.0 174910.0 False True 101948.15138882054 156284.26481744417 161513.23336457938 152541.62611712527 160488.70216617233 165630.11790216746 181931.8930214772 155809.890044302 175452.1662621584 163747.09405201513 0.6225951793467319 0.9544246615320064 0.986357860575369 0.9315684470630643 0.9801010704665832 1.0114995863655094 1.1110541782420003 0.9515276649416946 1.0714826255568546 1.0 17.321109778436842 4.795985441836527 2.5249092496400425 1.003637412226575 0.5043070833676853 0.838118796949991 0.050141163387911955 0.24336150995493036 1.7142323040658252 0.01250944367352157 0.27593021937701584 62515.17364566541 -4.795985441836527 -0.4993303288588897 DLIDWTDGIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLIDWTDGIAR 11 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;Q3HKR1;A0A0A0MSJ3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 0 ; 179.1 1.687e-05 73464000.0 122375.0 147852.0 125226.0 121113.0 119821.0 153241.0 145095.0 123340.0 164329.0 129443.0 False True 121716.14659714066 152773.16444157864 142856.73231609547 136445.89338200443 135079.49411529177 142647.8103605126 138076.20053327372 132544.25710782965 123832.31984578549 121181.83691827205 1.004409156458232 1.260693585166666 1.1788625750279846 1.125959936339526 1.114684325229305 1.1771385381517012 1.1394133316067458 1.0937633929185335 1.0218719487583028 1.0 16.88681395417517 1.3727370166818975 1.8601832769892783 0.9996646808622519 1.1491750445391633 0.427092579633331 0.060718523868366125 0.289497406147603 1.7863909818076067 0.05164387175169419 0.015850150834844173 23.59049298409441 -1.3727370166818975 0.1495103636769114 DLIDYVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLIDYVR 7 0 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1;Q9Y3C1-3;Q9Y3C1-2 D6RIC3 NOP16 Nucleolar protein 16 0 ;;; 114.78 0.013557 713740000.0 1152040.0 1340590.0 1220570.0 1265130.0 1257230.0 1323160.0 1283660.0 1225480.0 1534770.0 1312460.0 False True 1145837.5446436766 1385210.727746232 1392415.646615375 1425295.3282832978 1417330.788313971 1231693.063583611 1221564.4617425962 1316931.5404613512 1156546.4983643552 1228697.6791464633 0.9325626344795027 1.1273812519190995 1.1332451181828889 1.1600048998818038 1.1535228009045684 1.0024378530927385 0.9941944893972435 1.0718108797732744 0.9412783290742202 1.0 20.228698553830593 2.724207518715319 24.41286006543237 1.0111101913931397 1.1078211879026651 0.3454801703061119 0.06752937334698642 712.5130078505463 1211895.4285729062 0.0220234311220914 0.020852821602155625 529.9165931867224 -2.724207518715319 0.09671099650952542 DLIEAIR ddPTM_BT-474_Trastuzumab_2h_R1 7 DLIEAIR 7 0 Q9BRT3 Q9BRT3 MIEN1 Migration and invasion enhancer 1 0 ;;;;;; 175.75 0.0018083 3262845000.0 2748170.0 3224160.0 2764300.0 2662010.0 2611490.0 3024690.0 2766240.0 2594830.0 3306100.0 2860980.0 False True 2733374.158070392 3331474.2165541262 3153489.412273672 2999020.193057963 2944047.771986068 2815600.299654393 2632426.4031369975 2788469.3908797586 2491355.954470312 2678389.8069917923 1.020528883038259 1.2438347128776746 1.1773825467979522 1.1197101277899066 1.0991856989228341 1.051228724177646 0.9828391656304808 1.041099164729723 0.9301692934937109 1.0 21.352934511946344 2.7514330853389817 1.230178565268135 0.99136317003419 1.1545489227224348 0.580052991078268 0.05819371232338657 0.3106189095034996 0.9706723365928173 0.026300834753811092 0.02496708013815754 564.2000045724219 -2.7514330853389817 0.16318575268824476 DLIEAIRR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLIEAIRR 8 1 Q9BRT3 Q9BRT3 MIEN1 Migration and invasion enhancer 1 0 ;;;;; 172.21 0.00045678 4594290000.0 3352350.0 4982040.0 4313350.0 4731580.0 4278850.0 4475650.0 4567250.0 4110050.0 5845260.0 4726220.0 False True 3334301.3200810975 5147864.189693216 4920632.187689706 5330597.542860169 4823736.184769075 4166258.850046843 4346314.668910669 4416762.801411012 4404773.995471138 4424588.593279487 0.7535844858311961 1.163467310274296 1.112110670620012 1.2047668230571356 1.090211232767687 0.9416149687622886 0.9823093327845873 0.9982312950224657 0.9955217084276612 1.0 22.07711188620826 2.751850870065226 23.71234927522982 0.984559676098018 1.0807092525743212 0.1030906712116969 0.11520456864707453 797.4943247234095 1422880.4427598352 0.03477418573019291 0.03665889526773827 564.743017590939 -2.751850870065226 0.09614957647630318 DLIHDQDEDEEEEEGQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLIHDQDEDEEEEEGQR 17 0 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;R4GNE6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 ;; 312.66 3.6337e-58 10182400000.0 1701290.0 1721160.0 1872610.0 1781130.0 1803000.0 1959580.0 1998860.0 1660530.0 2099810.0 1986930.0 False True 1692130.44367109 1778447.7701368087 2136257.2109820955 2006620.8753766287 2032601.3627817384 1824118.846955147 1902167.5054132773 1784447.1806004867 1582339.9615124462 1860122.4263036435 0.9096876741783174 0.9560917845987508 1.1484497906017805 1.0787574231681625 1.0927245078276044 0.9806445108991879 1.0226033934729684 0.9593170618056923 0.8506644181785417 1.0 20.826966146576112 1.638018241086882 3.120556221502733 0.9200800475772729 1.0324678313257911 0.24316348369783458 0.0736976730065288 0.2805656984470123 6.442505161701304 0.04841155311205965 0.020584074723957936 43.452847470325935 -1.638018241086882 0.11238778374851821 DLIHDVSFDFHGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLIHDVSFDFHGR 13 0 K7ELV2;Q96EE3;Q96EE3-1;K7EP88;K7ENI5 K7ELV2 SEH1L Nucleoporin SEH1 0 ;;;;; 257.95 3.724e-24 2684110000.0 1171864.0 1520070.0 1319410.0 1375470.0 1397200.0 1423740.0 1412980.0 1059013.0 1658850.0 1384740.0 False True 1165554.814430329 1570664.6110482789 1505171.459482691 1549604.3609698846 1575125.1381467814 1325320.2049234638 1344628.7592922228 1138041.9276190517 1250048.6449511743 1296364.7076644404 0.8990948361516402 1.2115916159720388 1.1610709938212076 1.1953459946944147 1.215032412433197 1.0223359191189263 1.037230303588514 0.8778717292214576 0.9642723514151275 1.0 20.306040219583032 2.3231421978762814 2.060634072311206 0.9426525391293958 1.1431214978732662 0.405768966308492 0.09418582513335517 0.27795997668081646 2.415015407543378 0.041280834039952204 0.029590547173091796 210.44673773856005 -2.3231421978762814 0.20046895874387038 DLIHGAPVGKPAANR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLIHGAPVGKPAANR 15 1 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 109.84 0.00058191 459120000.0 538240.0 534730.0 568770.0 566940.0 533970.0 522990.0 641210.0 665940.0 755060.0 800500.0 False True 535342.175644086 552528.1647988895 648847.8721625363 638714.5458703319 601967.9144118499 486836.93228603684 610192.222639928 715635.8243748007 568985.5802856397 749411.4046574708 0.7143501851146391 0.7372828347220449 0.8658099785112043 0.8522882650314957 0.8032542748491904 0.6496257319550036 0.8142286317604482 0.9549305227105428 0.7592432897998167 1.0 19.51539840742487 -4.999999999996582 0.12607783562081876 1.6802157971731613 0.7122335360621916 0.3874542236399353 0.08002369017521055 163.31022741301024 1.3140144043562096 27.879823584237606 0.7111268203829063 1.0000000000078695e-05 4.999999999996582 -0.9679822611109696 DLIHTGVANDHEEDFELRK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLIHTGVANDHEEDFELRK 19 1 E9PFH4;C9J7E5;Q9Y5L0-5;Q9Y5L0-3;Q9Y5L0;Q9Y5L0-1 E9PFH4 TNPO3 Transportin-3 0 ; 257.2 2.2388999999999997e-31 578580000.0 521390.0 550680.0 465960.0 495720.0 469600.0 574910.0 552940.0 376100.0 760870.0 552170.0 False True 518582.894171875 569009.0509069104 531563.1178030755 558478.1011726827 529400.7764627318 535167.8248925704 526192.179764074 404166.49179710285 573363.7836356502 516930.03786347975 1.0031974468251579 1.1007467340429242 1.028307660355888 1.0803746353779808 1.0241246158779915 1.0352809581437155 1.0179175927537034 0.7818591727955311 1.1091709547493436 1.0 18.979609511539138 1.979881875938152 24.781788393193843 0.9295512189766164 1.04595203095749 0.12983889080033617 0.08121341147741482 813.8364150817033 1002493.7822881168 0.03154900553879119 0.020664962725604058 95.47328722371797 -1.979881875938152 0.11640081198087349 DLIIEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLIIEQR 7 0 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7BZC3 Q00341 HDLBP Vigilin 0 ; 108.46 0.016861 177524000.0 228817.0 249181.0 228225.0 228160.0 214432.0 263670.0 243298.0 228727.0 261260.0 244470.0 False True 227585.07469595844 257474.8389519045 260357.09623273826 257045.0326062282 241738.6441619601 245443.11351241742 231528.74625138292 245795.77019217197 196875.97370464078 228867.71529870297 0.9943957119462196 1.1249941417725318 1.1375876929296795 1.1231161733351078 1.0562374157773142 1.072423487917819 1.0116269389468364 1.0739643635249105 0.8602173244386667 1.0 17.80415444120354 1.2575324217752748 24.683926883921522 0.9301087188721363 1.075805775184127 0.5307804479784877 0.05421130179316211 132.07328855862968 171839.79883970084 0.035979467860436105 0.013090074134025277 18.093909832989734 -1.2575324217752748 0.1456970563119907 DLILQCLDDKDESIR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLILQCLDDKDESIR 15 1 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3;O14617-4;A0A2R8Y4J3 O14617-5 AP3D1 AP-3 complex subunit delta-1 0 ;; 234.77 1.0569e-17 959500000.0 573300.0 597750.0 496560.0 488900.0 463936.0 581150.0 556430.0 538180.0 837860.0 574230.0 False True 570213.416499618 617645.7474024938 566471.3318231073 550794.6898719543 523015.49963588937 540976.4683799508 529513.3551309794 578341.7244226661 631380.6297487959 537582.1497769627 1.0607000562354862 1.1489327680592607 1.0537391021225881 1.0245777135652165 0.9729033969094456 1.0063140463357951 0.9849905830219048 1.0758201786696493 1.17448213265777 1.0 19.03612570917588 4.051807910890742 7.716254271269571 1.033611350966465 1.1045753616991687 0.18824031959580645 0.05790339847610174 0.3834347316314785 48.673726798342585 0.014987940226931706 0.03255197085627271 11266.990052687848 -4.051807910890742 0.07096401073270364 DLIQGLLTVDPNKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLIQGLLTVDPNKR 14 1 O75582-3;O75582 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 0 89.471 0.0098384 274320000.0 134870.0 121390.0 122230.0 121830.0 119670.0 133150.0 132090.0 102390.0 161710.0 131840.0 False True 134143.87490546575 125430.3927681953 139438.92155779444 137253.66550848857 134909.26516033872 123945.65390138575 125700.3020671983 110030.86172588506 121858.73730298344 123425.85832609735 1.0868376912644258 1.0162407980733006 1.1297383177955285 1.1120333078491336 1.0930389060281163 1.004211399315653 1.018427611295939 0.8914733364476831 0.9873031385451377 1.0 16.913285152317105 2.4040987473784288 1.8183418102803666 0.9530323641461844 1.0871140546877873 0.6149138160382142 0.04237432120325908 0.21172719210300872 1.4266228375075112 0.01940310769669941 0.01446798789486373 253.5705118984312 -2.4040987473784288 0.1340816905416029 DLISHDEMFSDIYK ddPTM_BT-474_Trastuzumab_2h_R1 8 DLISHDEMFSDIYK 14 0 Q5W0H4;A0A0B4J2C3;P13693 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 ;;;;;;; 279.77 3.0974e-33 10792053000.0 6016026.0 5686470.0 5399592.0 5070955.0 4939931.0 6485193.0 6649463.0 5939426.0 8569680.0 6624990.0 False True 5983636.38445932 5875740.71640629 6159807.619504983 5712937.383063275 5569001.931584999 6036886.872412251 6327803.071274573 6382656.127914121 6457797.191828782 6202177.466260701 0.9647638135170712 0.9473673961072223 0.9931685529822055 0.921118012849705 0.8979107679326943 0.9733495865367258 1.0202550806869464 1.0290992417800373 1.0412145132832185 1.0 22.56434337647936 2.335022316756284 3.5808147914181467 1.025933647723157 0.9455791586372688 0.6714657726442133 0.025559549274620206 0.1402328354624094 3.5054570835794183 0.00995930130350161 0.007998753945968499 216.28296605346742 -2.335022316756284 -0.08035448908588827 DLISLDS(ph)SPAKER ddPTM_BT-474_Trastuzumab_2h_R1 1 DLISLDSSPAKER 13 1 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 DLISLDS(0.542)S(0.458)PAKER 55.011 0.080535 472130000.0 423030.0 327400.0 302270.0 303480.0 290150.0 463340.0 434180.0 401200.0 559010.0 422360.0 True False 420752.45348305185 338297.311082521 344826.98862206086 341900.53688349447 327098.8826462125 431310.39638504037 413177.05467133055 431139.58125232026 421249.47585023084 395404.6231994116 1.0641060543969836 0.8555724724339147 0.8720863854142563 0.8646852283036311 0.8272510321186838 1.0908076716329154 1.0449474549086288 1.0903756707844225 1.0653630512503771 1.0 18.592970214062028 2.7307868852411303 24.947287629142043 1.0648801121488487 0.8913026438544236 0.6056660204615353 0.06499789809658109 365.175804639461 1171911.4004029084 0.020381862392177666 0.0195470002598438 538.0057103289937 -2.7307868852411303 -0.1735774682944251 DLISLDSS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLISLDSSPAK 11 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 DLISLDS(0.095)S(0.904)PAK;DLISLDS(0.069)S(0.931)PAK;DLISLDS(0.064)S(0.936)PAK 238.07 1.4009999999999999e-15 257974000.0 1665040.0 1149800.0 980813.0 863480.0 833633.0 1417910.0 1390740.0 1278930.0 1921100.0 1409000.0 True False 1656075.6096433366 1188070.3979312216 1118902.9450205762 972796.4794654013 939791.2212200954 1319893.2191011203 1323464.593057272 1374370.25087495 1447670.6464211352 1319076.4136944108 1.255481177928937 0.900683527957055 0.8482472534603226 0.7374830368930909 0.712461546172272 1.0006192252383785 1.0033267059567619 1.0419186004741565 1.097488084383651 1.0 20.331096711218247 2.5011133433251853 23.713663382093056 1.0336629265182122 0.8781281889116956 0.19451808202619603 0.14043456593559953 637.8910136043293 630488.1181198781 0.04767587107094606 0.04467875710993658 317.0394773114491 -2.5011133433251853 -0.1555347376065166 DLKDEIVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLKDEIVR 8 1 P15924;P15924-3 P15924 DSP Desmoplakin 0 ;;; 101.65 0.0047853 2822870000.0 3194000.0 3005300.0 2582850.0 2408030.0 2436420.0 3678630.0 3630480.0 2904490.0 4561390.0 3399890.0 False True 3176803.8588867607 3105329.593757786 2946492.829465345 2712886.3510991237 2746683.645207257 3424334.966663573 3454859.8126195935 3121237.7925013755 3437296.5539945364 3182906.1094077243 0.9980828053636495 0.975627142936876 0.925724079876685 0.852329995874097 0.8629483719575882 1.0758517056290968 1.085441949546691 0.9806251536216932 1.0799239549777826 1.0 21.60191316975082 2.7312593220201045 24.995189944167855 1.0414030076122576 0.9221010219571505 0.5765593956853747 0.05199673373417749 461.06590311021336 1578405.8024893496 0.01814505094527952 0.017433412763961542 538.5912853108435 -2.7312593220201045 -0.11930198565510708 DLKDYFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLKDYFSK 8 1 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RD83;D6RF44;Q14103-2;Q14103-4;D6RBQ9 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ; 110.47 0.0031181 11130900000.0 8533600.0 8817200.0 7903200.0 7788300.0 7766800.0 9637700.0 11108600.0 9393900.0 15102100.0 9641100.0 False True 8487656.045772085 9110675.171890046 9015901.864154136 8774297.981447611 8755855.942569727 8971468.483705504 10571234.579026997 10094920.519257657 11380389.812772183 9025796.74383901 0.9403774854076723 1.0094039817713572 0.9989037112217679 0.9721355610447274 0.9700923022165833 0.9939807795726631 1.1712245333070346 1.1184520110258884 1.2608737085222324 1.0 23.105622859512373 2.2638252046889633 8.689720798235639 1.1452583985986637 0.9818091336010044 0.6011741641438846 0.06245228586006993 0.14013947946741218 42.608521613129476 0.020224801344409408 0.016637667694869344 183.5799320148415 -2.2638252046889633 -0.16344926499765933 DLKDYFTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLKDYFTK 8 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 ; 121.5 0.0013046 6860100000.0 10644600.0 10680700.0 10286400.0 9955800.0 9860900.0 12674300.0 13727200.0 12694500.0 19025100.0 13501100.0 False True 10587290.656326251 11036200.642880518 11734635.709008392 11216203.259208824 11116627.164866582 11798155.473093009 13063162.893003589 13641828.051364854 14336619.028278973 12639448.239126762 0.8376386734629888 0.8731552544134624 0.9284136053251576 0.8873965893928715 0.8795183899289112 0.9334391224903756 1.033523192299263 1.0793056621835055 1.134275702312577 1.0 23.59143014987449 2.2498036868090563 2.0810193722948 1.079285119895047 0.8834907279395773 0.8434600702411637 0.03702242619423619 0.1121188974891642 0.9854988176456585 0.017022124580136605 0.011417757856020129 177.7475759911154 -2.2498036868090563 -0.19579439195546977 DLKEEFTEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLKEEFTEALR 11 1 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 ; 181.98 5.4596e-06 446990000.0 752750.0 712380.0 618640.0 621890.0 673330.0 936370.0 875420.0 818000.0 1267770.0 918540.0 False True 748697.2776383869 736091.1376571957 705739.1346847257 700621.2102361826 759074.5843604147 871640.9458778868 833072.5901708434 879043.3137198348 955345.0707476551 859917.9907983416 0.8706612556661384 0.8560015554202024 0.8207051628603823 0.8147535203743451 0.8827290421679577 1.0136326431182836 0.9687814408876653 1.0222408684620465 1.110972303138721 1.0 19.71383955296074 2.7973378746431394 2.6771437555078452 1.023037242191403 0.8397855714808093 0.8502232257283939 0.03686776529930394 0.10695241496803365 1.5120706408506113 0.012881290053592447 0.013329833599572254 627.1015506145059 -2.7973378746431394 -0.18325167071059356 DLKPENILLDEEGHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLKPENILLDEEGHIK 16 1 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3;B7Z3B5;F2Z2J1;Q15349;Q15349-3;Q15349-2;E9PMM7;D6R910;A0A2R8Y7S9;B4DG22;B1AXG1;B7ZB17;P51812 E9PGT3;B4DG22 RPS6KA1;RPS6KA2;RPS6KA3 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-3 0 ; 176.94 1.8201e-09 209949000.0 381080.0 299330.0 272590.0 268360.0 256550.0 360990.0 361980.0 342830.0 538480.0 352800.0 False True 379028.3076219683 309293.01810119406 310968.3026052456 302334.34848442895 289220.12180901563 336035.61097905575 344469.64450211497 368413.7154554658 405778.81926232466 330284.0019527241 1.147583005477272 0.9364456536573799 0.9415179081236781 0.9153769080456527 0.875670998592338 1.0174141314514982 1.0429498324639452 1.1154452328217805 1.2285754588876716 1.0 18.33334756557877 2.078193306604348 1.9847140997873491 1.1259297120583531 0.9592403601900399 0.35721918352591964 0.08586362839261003 0.3287639783707226 2.4776307821373096 0.046553136494235224 0.025929879305380397 119.72733249541339 -2.078193306604348 -0.16668935186831324 DLKPENLLLASK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLKPENLLLASK 12 1 Q13555-8;Q13555-9;Q13555-10;Q13555-3;Q13555-7;Q13555-4;Q13555-2;A0A2Q3DQE3;Q13555;Q8WU40;Q5SWX3;Q13555-6;Q13555-11;Q13555-5;E9PBE8;E9PF82;E9PBG7;E7EQE4;A0A5F9ZH90;H7BXS4;A0A5F9ZHY2;A0A5K1VW76;A0A5F9ZHM9;A0A5F9ZH21;A0A5F9ZHR5;D6RFJ0;A0A5F9ZH50;Q9UQM7;Q9UQM7-2;Q13557;D6R938;Q13557-8;Q13557-6;Q13557-11;Q13557-12;Q13557-10;Q13557-3;Q13557-4;Q13557-9;Q13557-5 Q13555-8;E9PF82;Q13557 CAMK2G;CAMK2B;CAMK2D;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit delta 0 ; 169.19 4.0587e-05 2063550000.0 1830790.0 1674420.0 1446800.0 1383910.0 1418510.0 1973700.0 1876290.0 1858220.0 2890400.0 2115500.0 False True 1820933.23005989 1730152.057491735 1650496.864188964 1559112.8641045094 1599148.8403325146 1837262.7645900534 1785526.6845761484 1996889.812249969 2178099.6493756976 1980486.978829331 0.9194371129550403 0.8735993096578856 0.8333793061162035 0.7872371193402662 0.8074523374436796 0.9276823247159455 0.9015594162762818 1.0082822222998578 1.0997798383219746 1.0 20.917423785264962 1.8636295596452188 1.4916925873811313 1.0533907730095753 0.8478208298874431 0.749116723477042 0.046635920257623 0.19431778129856817 0.811585256736423 0.03548106370326562 0.015230859453311457 73.05157093562286 -1.8636295596452188 -0.20556994312213217 DLKPQNLLIDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLKPQNLLIDDK 12 1 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 CDK1;CDC2 Cyclin-dependent kinase 1 0 124.45 0.00029443 327580000.0 361140.0 275790.0 251460.0 214440.0 217340.0 415320.0 367700.0 305680.0 511590.0 371590.0 False True 359195.6623664258 284969.50343142415 286863.3822704981 241588.08201297137 245016.96072489352 386609.9059581191 349912.9462495936 328491.3938115882 385515.4994547856 347874.8080657951 1.032542897726844 0.8191725782498358 0.8246167173342496 0.6944684593754162 0.7043251050204026 1.111347809597635 1.0058588266138921 0.9442804888287833 1.108201831567727 1.0 18.40820868201065 2.7361882964092574 24.99950051328988 1.0210309078620612 0.8090908345308823 0.5512543636526637 0.09833957534954729 176.16420621501513 1856407.7054979648 0.03252174368671671 0.03201522746105465 544.7387832292442 -2.7361882964092574 -0.21194007333117892 DLKPSNIFLVDTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLKPSNIFLVDTK 13 1 P19525-2;P19525 P19525-2 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase 0 ; 131.24 0.00012109 597950000.0 1076460.0 1045840.0 893280.0 925670.0 956960.0 1204830.0 1283220.0 1189660.0 1806890.0 1274250.0 False True 1070664.4589659502 1080650.1521763704 1019046.0594710517 1042859.7270889172 1078823.1836536955 1121542.9379647514 1221145.7462235603 1278438.4701710748 1361606.1705855401 1192926.2740596884 0.8975110048690059 0.9058817595648829 0.8542406028187316 0.8742029996035927 0.9043502579436994 0.9401611502343644 1.0236556715846632 1.0716827166698046 1.1414001017446043 1.0 20.186073452813986 2.250961695037544 1.6435516915283752 1.0802731722228422 0.8842915925889331 0.8474114935276034 0.03491334816347307 0.12601744923077002 0.6775522116696097 0.01803546723321565 0.011207083537159403 178.22215677971468 -2.250961695037544 -0.19598157963390916 DLLDDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLDDLK 7 0 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 112.17 0.014922 51447000.0 262560.0 209030.0 157120.0 138540.0 130940.0 198990.0 162920.0 192710.0 261300.0 189420.0 False True 261146.40613315805 215987.4371886968 179241.13028847802 156079.14979517396 147614.43285781535 185234.2896720751 155038.9371851612 207090.998761552 196906.11624061354 177331.05342937907 1.472649043034969 1.2179899290719116 1.010771248589349 0.8801568973779962 0.8324229174931385 1.0445676946584173 0.8742909613792174 1.1678213982077574 1.1103871117476336 1.0 17.436085671168026 4.527845425679462 2.235091927850646 0.9904318230790705 1.4994614926929017 0.6995568427454342 0.10021530903804064 0.24599534941808543 1.935302624210525 0.028231349551190252 0.2066276186720111 33716.72825436259 -4.527845425679462 0.5090296696138312 DLLDDLKSELTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLDDLKSELTGK 13 1 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 ; 205.62 6.2388e-08 3971600000.0 1992340.0 1610340.0 1099620.0 1038780.0 1113740.0 1985710.0 1864830.0 1975460.0 3050200.0 1979080.0 False True 1981613.4628097855 1663939.193428913 1254436.9379316212 1170289.4414914877 1255568.1873458335 1848442.5415585488 1774621.048557599 2122878.856382626 2298519.0805859915 1852773.4200243652 1.0695390172338104 0.8980802376833704 0.6770590102243179 0.6316419637950643 0.6776695810593624 0.997662488883417 0.9578187107920955 1.145784386498112 1.2405829313741799 1.0 20.821255030940723 2.246893578571871 1.7288359431780347 1.1321801291638043 0.7875030283551426 0.5015954346484695 0.13949668672712004 0.30464151815589235 1.8191479156037431 0.07785328484537729 0.048974089033529046 176.5605116036729 -2.246893578571871 -0.34467710080866165 DLLDDLKSELTGKFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLDDLKSELTGKFEK 16 2 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 ; 211.17 4.3817e-12 3457600000.0 3852300.0 3025100.0 2689120.0 2315700.0 2036250.0 3611000.0 3569500.0 3632900.0 6839900.0 3793100.0 False True 3831559.6448307657 3125788.6247884366 3067724.7217499465 2608867.3825659277 2295554.3677006746 3361380.0693796766 3396829.6481858143 3904005.44549241 5154298.294964304 3551021.1105637136 1.079002215287455 0.8802506455086174 0.863899319726363 0.7346808991940288 0.646449090621222 0.9465953495404785 0.9565782749307784 1.0994036148866098 1.4514975085986113 1.0 21.759802506426244 1.7584114864450449 2.031936166772486 1.230412646080575 0.8473949693602084 0.4887889963240438 0.15019793553637803 0.2417517553068167 2.0021582143466023 0.10210068927403017 0.04332979067696355 57.333900241973815 -1.7584114864450449 -0.3830176767203667 DLLDLLVEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLDLLVEAK 10 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 175.73 6.3078e-06 142149000.0 324030.0 356730.0 311320.0 340060.0 341330.0 415990.0 359530.0 320200.0 510670.0 393020.0 False True 322285.4584831178 368603.54240216163 355151.1499580508 383111.5611328627 384796.3522785861 387233.5904351301 342138.16036202444 344094.9499426542 384822.2211274168 367937.12711864983 0.875925354440215 1.0018112205439298 0.9652495597257955 1.041241921229981 1.0458209403654435 1.0524450018610318 0.9298821324212114 0.9352004040399348 1.0458912481624123 1.0 18.489099734894054 4.740083571826626 23.800623946755092 0.9967708537683342 0.8759252737882962 0.42272050652975124 0.04380691429797731 76.47066282132188 1194839.5673498865 0.011634732271587702 0.07343806422183605 54964.66328659542 -4.740083571826626 -0.12084557998003798 DLLDQILMLDPAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLDQILMLDPAKR 14 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 ; 134.37 6.2716e-05 502640000.0 313230.0 341210.0 317610.0 311400.0 295520.0 360230.0 367850.0 344930.0 461050.0 355090.0 False True 311543.60448312457 352566.96858419967 362326.7272843908 350823.20807143854 333152.72031572927 335328.1479902081 350055.6901765374 370670.4281190499 347430.4052534816 332427.8521921561 0.9371766006629324 1.0605819165248598 1.0899409447646162 1.0553363857991334 1.0021805276507163 1.008724587241792 1.053027560320643 1.1150402280516138 1.0451302529628397 1.0 18.342681736617685 2.004567031376159 23.463801918560737 1.0706377758551344 1.0304839395072634 0.03418456851431073 0.04759347294050455 123.60276085793498 635019.1723169795 0.018065891974298087 0.013275452046225976 101.057146559675 -2.004567031376159 -0.040153836347871064 DLLDTVLPHLYNETK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLLDTVLPHLYNETK 15 0 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;;; 251.0 4.1005e-19 2000290000.0 2926876.0 2814437.0 2488299.0 2343605.0 2456986.0 3245624.0 3136263.0 2878519.0 4277126.0 3300319.0 False True 2911118.0248224935 2908113.8341819053 2838629.8705173726 2640305.1527047674 2769868.6034030276 3021261.6522570937 2984549.977001872 3093328.7046033097 3223085.6078520864 3089689.8158747465 0.9422039746078212 0.941231647021682 0.9187426698733853 0.854553469781642 0.8964875985840113 0.9778527400174377 0.965970746211264 1.0011777521192797 1.043174493210275 1.0 21.55903057782225 2.2622766134141647 1.437484051886959 1.0137695751363538 0.9112042796124205 0.6966881863189933 0.029011079701256874 0.2545801970664575 1.036590032468265 0.01828297874826914 0.011041601095698246 182.92649514477137 -2.2622766134141647 -0.10256529552393334 DLLEECKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLEECKK 8 1 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 71.223 0.084312 0.0 108810.0 107750.0 77520.0 79129.0 76958.0 92707.0 94771.0 84583.0 159290.0 110770.0 False True 108224.17904992757 111336.39361374946 88434.14218408105 89146.72328672094 86758.14513419698 86298.38329880412 90186.56466962249 90895.01296377121 120035.11387664496 103700.56376503177 1.0436218967444146 1.0736334458703543 0.8527836201976502 0.8596551460290283 0.8366217307244009 0.8321881787869728 0.8696824915433463 0.8765141640861682 1.1575165025006475 1.0 16.662064211777967 -0.7653052376599447 6.212224940683182 1.000000001678495 0.9210372999607231 0.020461120007754685 0.11058982530487735 3.2518957394731293e-09 5.234671712335538e-10 0.10911551120934512 0.02571877186977577 0.1716701404043574 0.7653052376599447 -0.07896270171777175 DLLEEEEAWEASHKNDLQDTEIS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLEEEEAWEASHKNDLQDTEISPR 25 1 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 DLLEEEEAWEASHKNDLQDTEIS(1)PR;DLLEEEEAWEASHKNDLQDT(0.037)EIS(0.963)PR 249.22 1.8385999999999998e-39 215000000.0 180420.0 140285.0 133622.0 116716.0 130670.0 188444.0 193770.0 171120.0 278920.0 225822.0 True False 179448.63876654665 144954.30142092684 152434.81613675522 131492.23363283888 147310.0499582307 175417.3098294611 184396.6048267164 183889.84332975317 210183.903336517 211409.84662405867 0.8488187358919601 0.6856553927627271 0.721039339325683 0.621977811027251 0.6967984335194473 0.829749950774045 0.8722233508575463 0.8698262936482652 0.9942011060169693 1.0 17.68968304767998 1.9598413016886767 0.9451827773697294 0.9902094293745185 0.7096241173595998 0.7474409258335263 0.061705211402172534 0.2829858357486733 0.46534758021314204 0.05252719399368254 0.024549915647409486 91.16776365518842 -1.9598413016886767 -0.28058531201491865 DLLFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLFGR 6 0 O43633;M0R1L7;M0QXX8 O43633 CHMP2A Charged multivesicular body protein 2a 0 ; 107.55 0.072514 342310000.0 233210.0 297810.0 268620.0 260830.0 246680.0 288280.0 295030.0 252080.0 331380.0 272600.0 False True 231954.42327206658 307722.4258200535 306439.36111310404 293851.0512564973 278093.2358130894 268351.8821381263 280758.27177595167 270891.48963630357 249715.8392645025 255202.43461539852 0.9089036459296803 1.205797375263308 1.2007697402061304 1.1514429778044397 1.0896966411475986 1.0515255567312458 1.1001394724116442 1.0614769018350045 0.9785010070175679 1.0 17.96128256682646 1.6231631003637401 0.8860456573013714 0.9872737657954338 1.119757253367833 0.21491904163576947 0.08066256922135667 0.794597452401843 1.213511175234968 0.07217557337617224 0.029391911564413297 41.99166551176962 -1.6231631003637401 0.13248348757239925 DLLHLPELFSPGMLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLHLPELFSPGMLVR 16 0 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 79.652 0.017756 57441000.0 42440.0 55280.0 58753.0 58164.0 50057.0 56623.0 56498.0 54447.0 60119.0 53879.0 False True 42211.50775552728 57119.96138253431 67024.9117097693 65527.55643631069 56431.462238916036 52708.78528620482 53764.975896680764 58510.11161626394 45303.47800332735 50440.39609186735 0.83685916499639 1.1324249174907635 1.3287943177071109 1.2991086810056967 1.1187751606101017 1.0449716768719666 1.0659110566609815 1.1599851735838707 0.8981586488895903 1.0 15.62229198427048 2.996058757587131 24.792565900854722 1.0584827891414625 1.1669165091657705 0.119959837088784 0.13909394144526116 352.5391030127975 2217691.7520213374 0.04242059347137038 0.04962936844071968 990.9660079197721 -2.996058757587131 0.10843372002430796 DLLHNEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLHNEDR 8 0 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 139.96 0.00065716 380250000.0 268200.0 301800.0 283690.0 338990.0 275980.0 297020.0 320340.0 281660.0 309100.0 344610.0 False True 266756.0409998211 311845.2305580474 323631.0861223158 381906.09924257244 311124.41713838273 276487.706509873 304843.9303823624 302678.8994405 232926.44672779806 322616.6947645359 0.8268513233467812 0.9666121921732845 1.0031442618260047 1.1837766161522092 0.9643779202606335 0.8570161153987073 0.9449105868648705 0.9381997409074332 0.7219912996064916 1.0 18.29946157142636 2.9910297584428194 24.971263926610074 0.8985306151528527 1.0036914959784258 0.17385761435010316 0.10582468161972185 754.512819308413 2100413.204645217 0.031808213687765104 0.03622699264490185 979.5571036811932 -2.9910297584428194 0.10516088082557307 DLLHNEDRHDDYFQER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLHNEDRHDDYFQER 16 1 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 ; 162.26 5.2532e-09 1349620000.0 302500.0 472300.0 442960.0 471140.0 429410.0 449210.0 421870.0 211410.0 516350.0 446820.0 False True 300871.3736109094 488020.2199886207 505324.91772265866 530786.2756929274 484092.81818752433 418157.1700265978 401462.53640009783 227186.48771822784 389102.4612355174 418303.56505815155 0.7192656212936721 1.166665218167044 1.2080339732519603 1.2689021084941956 1.1572763385849387 0.9996500268135812 0.9597396960847978 0.5431139170105923 0.9301915970556581 1.0 18.674190768067334 2.1652145574114603 2.697193035542348 0.7734600688656331 1.114356386458574 0.2660950879798867 0.18412259759693234 0.2739918189729352 4.022085393626487 0.0814801104429058 0.054672950374878265 146.28997221065683 -2.1652145574114603 0.3408963175929408 DLLHPS(ph)PEEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLHPSPEEEK 11 0 P42677 P42677 RPS27 40S ribosomal protein S27 1 DLLHPS(1)PEEEK;DLLHPS(1)PEEEK 141.58 0.00024902 680230000.0 1044750.0 732880.0 597510.0 574480.0 636140.0 938210.0 835400.0 873880.0 1323700.0 844280.0 True False 1039125.182082636 757273.4677646839 681634.2143499767 647209.1090972382 717148.6583028157 873353.7510087806 794988.5104620886 939093.3630727271 997491.8716712594 790397.3275755264 1.314687114732612 0.9580921409331594 0.8623943813687087 0.8188402041824896 0.9073267751329644 1.1049553440264221 1.0058087024416507 1.1881282113558158 1.2620132139502256 1.0 19.592218543449416 2.1319851417164655 1.638722074952761 1.1615496044879512 0.9646603292490918 0.17337284844392753 0.14614796092091503 0.5689952794464928 2.9409917932685126 0.08757217334942556 0.048329887080182946 135.51430487776378 -2.1319851417164655 -0.19688927523885935 DLLHPS(ph)PEEEKRK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLLHPSPEEEKRK 13 2 P42677 P42677 RPS27 40S ribosomal protein S27 1 DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK 171.08 1.3411e-05 1990880000.0 2158380.0 1519190.0 1331200.0 1445030.0 1501060.0 2270800.0 2251320.0 2044600.0 4270460.0 2332100.0 True False 2146759.5218985635 1569755.320780253 1518621.3890021767 1627970.6498377356 1692211.0935203305 2113824.9408882246 2142415.0507224216 2197178.4342684303 3218062.354232263 2183263.381388741 0.9832801393540719 0.7189949385684082 0.6955740667606509 0.7456593023614988 0.7750833490570159 0.9681951151233308 0.9812902414731399 1.006373510863741 1.4739689135377252 1.0 21.05805475192168 2.045036897947532 1.126094475885601 1.193359931813189 0.7752308045217895 0.5591987509457237 0.14405695634390403 0.35545132389738976 0.8354981065642547 0.10546127804376952 0.05073796191676926 110.92690554944411 -2.045036897947532 -0.4181291272913994 DLLHPSLEEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 DLLHPSLEEEK 11 0 H0YMV8;Q71UM5;C9JLI6 H0YMV8 RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 0 ;;;; 211.46 9.2505e-09 1406220000.0 2898440.0 3119990.0 3015770.0 2899650.0 2809560.0 3666830.0 3648880.0 3356610.0 5097670.0 3512160.0 False True 2882835.121086956 3223836.981076214 3440364.202457247 3266745.3926921906 3167340.8124332046 3413350.672889361 3472369.7343247626 3607097.282720216 3841417.533778372 3288010.9418885442 0.8767717541204817 0.9804824369667485 1.0463359956099159 0.9935323970716049 0.9632999611047431 1.0381202292863494 1.0560700057556158 1.0970454011471134 1.1683104471580519 1.0 21.64878366937238 2.350466758172304 1.5793969324933395 1.0966967505081724 0.9767027526448739 0.45840170833272975 0.05536964090798996 0.3435924359252214 1.72932153995895 0.028115337781535233 0.019081265279397887 224.11284984527367 -2.350466758172304 -0.11999399786329845 DLLHPSPEEEK ddPTM_BT-474_Trastuzumab_2h_R1 7 DLLHPSPEEEK 11 0 P42677 P42677 RPS27 40S ribosomal protein S27 0 ;;;;;; 172.92 1.2787e-05 17531120000.0 16948120.0 17029450.0 15224110.0 14818530.0 14929390.0 19555270.0 19718230.0 18661060.0 27160630.0 19252950.0 False True 16856873.205033142 17596264.948730104 17367532.35766368 16694554.37862188 16830559.323072687 18203460.213054113 18764383.883946486 20053643.05614263 20467256.67029579 18024210.24772021 0.9352350518195537 0.976257195565934 0.9635668980204227 0.9262294518969832 0.9337751330991879 1.009944955305688 1.0410655238733633 1.1125948255446647 1.1355424947334147 1.0 24.103432711657735 2.290880158567815 1.9513125167719463 1.0920201857398157 0.9490079362517855 0.7152478570188869 0.0372126134184538 0.15920179120440808 1.233123274049479 0.01694903577066218 0.011589434571169954 195.3800239788501 -2.290880158567815 -0.14301224948803026 DLLHPSPEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLLHPSPEEEKR 12 1 P42677 P42677 RPS27 40S ribosomal protein S27 0 ;;; 174.73 1.9207e-05 2580030000.0 2592270.0 2685930.0 2529210.0 2442580.0 2499000.0 3189950.0 3136380.0 2878770.0 4262480.0 3337510.0 False True 2578313.5063482733 2775329.556371025 2885300.783712586 2751810.3775566276 2817232.837266536 2969436.264834592 2984661.3172648908 3093598.435497862 3212048.918305743 3124507.2544139354 0.825190436893989 0.8882455153369756 0.9234418577958406 0.8807181912185336 0.9016566798770211 0.9503694576607953 0.9552422427723646 0.9901076181300558 1.028017750244663 1.0 21.575197259046185 2.441957778014891 0.6378174310179345 1.0189184858636635 0.8678387652061572 0.8398695877374854 0.023670988179966202 0.299864635870194 0.2471704171320221 0.02017255845574293 0.016433997046475544 276.667265721314 -2.441957778014891 -0.1510797206575063 DLLIAYYDVDYEK ddPTM_BT-474_Trastuzumab_2h_R1 6 DLLIAYYDVDYEK 13 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;; 284.73 2.469e-32 1644638000.0 2033880.0 2185880.0 1978410.0 1812420.0 1779480.0 2352340.0 2466070.0 2251790.0 2931050.0 2140970.0 False True 2022929.8160653098 2258635.694407634 2256952.9313520114 2041872.186168392 2006086.230195704 2189728.2726127366 2346776.772797756 2419830.0041579325 2208732.001557789 2004331.4616233644 1.0092790812288512 1.126877334240067 1.1260377709802758 1.0187297985706527 1.0008754882143687 1.092498079553775 1.1708526347718133 1.2073003145887078 1.1019794100167817 1.0 20.934689679902032 2.4286082233888138 5.83460417575311 1.1451616928487542 1.0605628527568651 0.1271083388243358 0.0664170363942248 0.26788346792946516 20.90929607723454 0.023400482010216994 0.01963251797204983 268.29230914752856 -2.4286082233888138 -0.08459884009188912 DLLIDEWK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLLIDEWK 8 0 Q16539-2;Q16539;B4E0K5 Q16539-2 MAPK14 Mitogen-activated protein kinase 14 0 ;; 143.01 0.0014152 101651000.0 294208.0 275300.0 261408.0 235636.0 242299.0 343855.0 313623.0 280941.0 378166.0 300535.0 False True 292624.0168175818 284463.194077636 298211.97420093213 265467.4934396964 273154.3414313107 320085.1131976046 298451.85733379406 301906.2440094918 284972.0564647829 281354.5989990416 1.0400541446936808 1.0110486734165842 1.059915051191141 0.9435335138794041 0.970854368128673 1.1376572991390659 1.0607676519082267 1.0730453494755927 1.0128572892663241 1.0 18.102030020199024 2.7693953629577965 24.999310383035358 1.0625971256837108 1.0050396972197662 0.2343683443526713 0.04622128488753398 929.6362527734163 753702.8125809651 0.01409328433997939 0.014946925449877024 588.0244210025563 -2.7693953629577965 -0.057557428463944627 DLLIFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLIFR 6 0 H3BPB8;P34949-2;P34949;F5GX71 H3BPB8 MPI Mannose-6-phosphate isomerase 0 ; 155.88 0.022848 272260000.0 390480.0 435120.0 380300.0 394080.0 381740.0 460700.0 450480.0 360290.0 551820.0 434550.0 False True 388377.69906640664 449602.70616440545 433842.93437314243 443970.48759406776 430352.3262497512 428852.89337114873 428688.56139928376 387176.6693155496 415831.3550091668 406816.6469630277 0.9546750408709385 1.1051728328247743 1.0664335828237896 1.0913282209771928 1.0578532846736295 1.0541675139712847 1.053763567935419 0.9517227778310089 1.0221591424870045 1.0 18.634019190012808 1.76127909523582 24.999999999974463 0.9876108315978542 1.0586591755901764 0.3312898589213048 0.040967974456069214 11.628419507857682 12806.10259458915 0.017868233175227802 0.00990902728840223 57.71372360216963 -1.76127909523582 0.07104834399232218 DLLLDPAWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLLDPAWEK 10 0 O43707;O43707-2;F5GXS2;O43707-3;K7EP19;D6RH00;P12814-3;P12814;P12814-2;P12814-4;P35609-2;P35609;A0A494C1A0;Q08043;A0A494C166;A0A494C033;A0A494C0Q3 O43707;P12814-3 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 138.66 0.00013688 51219000.0 172030.0 152940.0 164760.0 121680.0 119000.0 180080.0 156220.0 156820.0 202410.0 179760.0 False True 171103.80959433003 158030.51544581752 187956.77588040757 137084.67552386853 134153.94463173984 167631.49346272316 148663.0417816467 168522.7047158247 152528.76765504223 168287.562899721 1.016734728616203 0.9390504724344042 1.1168785894915303 0.814585897863138 0.797170880130217 0.996101497783358 0.883386978931009 1.001397261996383 0.9063579329741135 1.0 17.36056903431379 3.7386824476548064 24.999999991021078 0.9161095157463165 1.0157041782359904 0.28754308548983676 0.07902073013091493 15.661105069947157 3213515.3951062607 0.020988091388665267 0.03507239876743472 5478.762161060257 -3.7386824476548064 0.09959466248967386 DLLLQLYLQRPELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLLQLYLQRPELR 14 1 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 0 79.771 0.01656 57853000.0 671870.0 770800.0 688260.0 672450.0 673010.0 755610.0 805680.0 700910.0 868770.0 748940.0 False True 668252.7265717748 796455.61204156 785161.0255368373 757582.1010521488 758713.8342572046 703376.4592146156 766706.1804035145 753215.463348864 654673.2744215756 701142.0080002066 0.9530918400935092 1.1359405126975723 1.1198316697301725 1.0804973777179896 1.0821115060859128 1.0031868739697714 1.0935105465871453 1.074269484290609 0.9337242198464633 1.0 19.419347149041954 1.2490463836933212 24.9921391720236 0.966862112948075 1.0718924323939971 0.3653990888635099 0.05299252212534703 175.94015573005993 419348.1985202201 0.034644950339427154 0.012358212438502263 17.743789787054286 -1.2490463836933212 0.10503031944592212 DLLLTGHEDGTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLLTGHEDGTVR 13 0 J3QRV5;Q6P1M3;Q6P1M3-2 J3QRV5 LLGL2 Lethal(2) giant larvae protein homolog 2 0 63.16 0.07116499999999999 134750000.0 41491.0 50190.0 47358.0 51233.0 49412.0 48445.0 45333.0 49051.0 73025.0 56509.0 False True 41267.61706608347 51860.54380950431 54025.59475688481 57719.09254696217 55704.3253121305 45096.11117726354 43140.069601122654 52711.43469593111 55028.967234867174 52902.54724021109 0.7800686208681471 0.9803033410475411 1.0212286094953873 1.0910456217709312 1.0529611184731344 0.8524374256025635 0.8154629947257436 0.9963874604485071 1.0401950398532 1.0 15.691049568851826 7.999933722891277 0.005870237835947405 1.8592299301550403 8.009663448359708e-05 0.034635680434867866 0.10023563889584002 265261.71882011957 120.44809756955496 17478.000850042838 20803.04570238845 99984740.29615603 -7.999933722891277 -1.8591498335205567 DLLNHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLNHK 6 0 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 0 80.377 0.06467300000000001 185160000.0 94194.0 101100.0 92310.0 89449.0 88756.0 109600.0 100120.0 93868.0 145800.0 117070.0 False True 93686.86996993728 104465.05238375935 105306.44562709643 100773.23422858739 100058.55050197226 102023.60997064892 95276.81310445826 100872.90681204593 109869.54361990615 109598.49237133033 0.8548189664189638 0.9531613996096006 0.9608384508639769 0.9194764640297961 0.9129555374079799 0.9308851587573215 0.8693259463976125 0.9203858979216496 1.0024731293534357 1.0 16.741868427266592 1.2450271743013914 8.152538499067083 1.0016208919480638 0.9164029977000661 0.552538403216243 0.030950857288994587 0.08246744021775096 44.647053052331586 0.023444377177229074 0.007541102400613734 17.58033612686867 -1.2450271743013914 -0.08521789424799775 DLLPHQELR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLPHQELR 9 0 Q15650;H0YL91 Q15650 TRIP4 Activating signal cointegrator 1 0 152.97 7.9193e-05 95384000.0 70001.0 89733.0 87844.0 89747.0 75414.0 86805.0 88270.0 84072.0 101460.0 95014.0 False True 69624.12239384228 92719.70866025591 100211.67164626434 101108.96099803281 85017.52588620187 80804.37466699057 84000.04287585412 90345.87954896578 76456.54249434611 88950.12517442214 0.7827321463271295 1.042378619236814 1.1266051784610698 1.1366927342684279 0.9557887155244712 0.9084233946668587 0.9443499119437841 1.0156914267608586 0.8595439561711984 1.0 16.440709015265504 3.0455949694258715 24.993434631818396 0.9501992957102229 1.0329183068998489 0.11561637558727422 0.09949680160912051 266.0137365108259 145816.95909434074 0.029471081755270793 0.035224668473935065 1110.695390298672 -3.0455949694258715 0.08271901118962599 DLLPSDMAVALLEAQAGTGHIIDPATSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLPSDMAVALLEAQAGTGHIIDPATSAR 29 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 259.45 4.5035e-58 380180000.0 159699.0 198440.0 179966.0 180397.0 191350.0 201875.0 202057.0 181839.0 222244.0 192356.0 False True 158839.198328227 205044.95544048678 205303.648507486 203235.24170347909 215717.28827969264 187919.85641263452 192282.73097730216 195408.74953973273 167474.94411702588 180079.67539574282 0.882049559336234 1.1386346348630423 1.1400711826934995 1.1285851179865225 1.1978991399536492 1.0435372898116466 1.0677647577648168 1.085123843711417 0.9300046979148713 1.0 17.45827583580079 1.2513872241432005 23.004502815551298 0.9650024250399669 1.091533086199912 0.2563089568798299 0.08154981595537253 95.51291761004468 171308.28859304768 0.05407783017991205 0.019399248639533424 17.83968674525695 -1.2513872241432005 0.12653066115994505 DLLPYGFAIHHAGMTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLPYGFAIHHAGMTR 16 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 121.82 5.591600000000001e-05 1138510000.0 1141790.0 1399430.0 1258070.0 1321010.0 1251540.0 1428400.0 1210900.0 961600.0 1590220.0 1319660.0 False True 1135642.729504795 1446009.1815766995 1435195.3206595315 1488249.7305537926 1410916.200541241 1329658.070091923 1152324.1409127885 1033359.4749058615 1198331.58885629 1235438.1689822318 0.9192226353507846 1.1704423724968271 1.1616893153316301 1.2046331155365144 1.1420370812272784 1.076264359864574 0.9327250605039072 0.8364315599518469 0.9699648423874498 1.0 20.2365913780201 2.2947205735182994 3.329039852718127 0.9094474588555943 1.1279314881181675 0.5165032736626944 0.08363644564220148 0.16646473819389035 3.767945126996911 0.03204318006004932 0.024928799459503787 197.11540810855482 -2.2947205735182994 0.21848402926257315 DLLQFFKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLQFFKPR 9 1 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ; 214.93 6.001300000000001e-07 1711460000.0 965530.0 1104660.0 966960.0 965130.0 960040.0 1016170.0 1078490.0 1007090.0 1308920.0 1030150.0 False True 960331.6937604677 1141427.9403189274 1103099.5630330106 1087315.3590429917 1082295.4033971052 945924.5597068806 1026319.3184681088 1082244.1696994002 986354.2046294056 964404.9450442137 0.9957764097906412 1.183556706323813 1.1438136736041293 1.1274468931649277 1.122241656846219 0.9808375253234669 1.0641995603009446 1.1221885321728458 1.0227593810027442 1.0 19.87927952290159 DLLS(ph)DLQDIS(ph)DSER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLSDLQDISDSER 14 0 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;Q9UQ88-9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 2 DLLS(1)DLQDIS(1)DSER;DLLS(1)DLQDIS(0.998)DS(0.002)ER 154.26 9.0137e-06 128344000.0 337230.0 285020.0 170617.0 271320.0 255650.0 294050.0 259540.0 286980.0 361470.0 285920.0 True False 335414.39114977507 294506.7184017715 194638.39057045072 305669.0841809333 288205.5121437339 273723.0156192451 246985.0586609174 308395.9048549125 272390.56194984505 267672.3408115728 1.2530782602819956 1.1002508421633623 0.7271516734987045 1.141952445494203 1.0767100973896118 1.0226047816122013 0.9227141583327874 1.1521396044128702 1.0176268535029311 1.0 18.030108544175377 4.612318234278976 4.477465357377079 1.0175802795797049 1.2457031189123295 0.29271918439519196 0.11511647601130677 0.2712342842534886 7.980753811403102 0.027335986567906326 0.13124368929443853 40956.066008866284 -4.612318234278976 0.22812283933262467 DLLS(ph)GDDEETQSSADDLTPSVTSHETSDFFPRPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLR 35 1 A8MQD4;Q7Z3K6-4;Q7Z3K6-3;Q7Z3K6;Q7Z3K6-2 A8MQD4 MIER3 Mesoderm induction early response protein 3 1 DLLS(1)GDDEETQSSADDLTPSVTSHETSDFFPRPLR 149.18 4.4358000000000005e-11 61453000.0 8718.0 12514.0 10221.0 9346.4 9871.2 12772.0 9972.5 10700.0 10118.0 12630.0 True False 8671.063256660858 12930.520925127248 11660.02795747539 10529.653281692019 11128.238808813712 11889.101702054077 9490.092076350466 11498.488333499074 7624.55447425383 11823.942586912988 0.7333478823094245 1.0935879322891036 0.9861370580724045 0.8905365705468227 0.9411614380748687 1.0055107773622995 0.8026165559070219 0.9724749802342465 0.6448402821824306 1.0 13.529423548921438 2.2401613216721605 24.999997048582376 0.863735088745358 0.9482849040738761 0.09996743430151711 0.1254778930594443 102.1737173268961 1595789.7037898698 0.042365313009360625 0.03371140687392708 173.8446466724838 -2.2401613216721605 0.08454981532851813 DLLSDLQDIS(ph)DSER ddPTM_BT-474_Trastuzumab_2h_R1 6 DLLSDLQDISDSER 14 0 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;Q9UQ88-9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 DLLSDLQDIS(0.974)DS(0.026)ER;DLLSDLQDIS(0.989)DS(0.011)ER;DLLSDLQDIS(0.999)DS(0.001)ER;DLLSDLQDIS(0.999)DS(0.001)ER;DLLSDLQDIS(0.995)DS(0.005)ER;DLLSDLQDIS(0.981)DS(0.019)ER 385.79 7.118499999999995e-114 10900555000.0 2414991.0 2656950.0 2383091.0 2300600.0 2386000.0 2458910.0 2498910.0 2463640.0 2631560.0 2460900.0 True False 2401988.956786725 2745384.974589806 2718609.498601702 2591855.724114165 2689842.957070011 2288931.3393515334 2378028.1765367724 2647489.3269104343 1983047.299097394 2303843.2551175132 1.0426008589999347 1.1916544098612172 1.1800323188493276 1.125013916791818 1.1675459912887212 0.9935273739943653 1.0322005072413118 1.1491620886228184 0.8607561711034216 1.0 21.135611133866046 2.7426765782920586 24.971791379800607 1.0293413548447599 1.1454023991376492 0.41569554599362635 0.07729319035170114 394.68466820421037 2394580.282036562 0.02398280299561187 0.024624365820023 552.9381794697053 -2.7426765782920586 0.11606104429288933 DLLSDLQDIS(ph)DSERK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLSDLQDISDSERK 15 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;Q9UQ88-9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 DLLSDLQDIS(1)DSERK 170.19 7.070000000000002e-07 30783000.0 56762.0 42714.0 34204.0 39841.0 34873.0 52576.0 47813.0 46980.0 74606.0 47085.0 True False 56456.39969885104 44135.70966884172 39019.625893502394 44884.86651501023 39313.869841535015 48941.54487059152 45500.10252660265 50485.8861596062 56220.35096918176 44079.994988503386 1.2807714636441219 1.0012639447974725 0.8852003250835033 1.0182593379767118 0.8918755515237369 1.1102892566878941 1.0322165993546424 1.1453242263928012 1.2754164555564202 1.0 15.427836439437156 1.7423137288241257 3.427689297343165 1.1605316074721232 1.0200926779769335 0.13332113871352724 0.12250948881062393 0.3514837222613583 8.720364480890124 0.0674341272171984 0.03264345137461222 55.247639710274484 -1.7423137288241257 -0.14043892949518977 DLLTEGQSFSS(ph)LDEEALGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLTEGQSFSSLDEEALGSR 20 0 O14986-3;O14986;O14986-2 O14986-3 PIP5K1B Phosphatidylinositol 4-phosphate 5-kinase type-1 beta 1 DLLTEGQSFS(0.022)S(0.978)LDEEALGSR 263.55 1.7682999999999995e-36 27965000.0 43070.0 47460.0 46090.0 51169.0 43075.0 48035.0 47097.0 47442.0 59724.0 55217.0 True False 42838.11590552683 49039.67740982419 52579.07137853839 57646.99015352425 48560.345924472254 44714.45351222734 44818.7381819883 50982.36294559467 45005.82046059855 51693.00378634794 0.8287023923504389 0.9486714606972696 1.0171409577174633 1.1151797328664572 0.9393988038531625 0.8650001013103512 0.8670174859102476 0.9862526688584318 0.8706365883981487 1.0 15.657681416651775 3.011994473403414 24.99454304275933 0.916863847950166 0.9843421504784161 0.10971968179545699 0.07920117608709386 479.3799334547455 998942.4836339748 0.023813838754923246 0.028445752536896993 1028.0032162305454 -3.011994473403414 0.06747830252825016 DLLTPPADKPGQDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLTPPADKPGQDNR 15 1 I3VM54;Q9Y2K7;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 0 83.69200000000002 0.0079667 0.0 75469.0 75728.0 55664.0 48397.0 57366.0 70445.0 64819.0 62327.0 66348.0 65193.0 False True 75062.68328939419 78248.56070145739 63501.007359838586 54524.05523774377 64671.2200650789 65575.30295969309 61683.4573373739 66978.15723009313 49997.42441765102 61032.32692546462 1.229884015090299 1.282083850367003 1.0404487352643268 0.8933635334653217 1.0596223890342287 1.0744355698542603 1.0106686152193487 1.0974209997251099 0.81919577601408 1.0 15.897285975365177 4.192856732269015 5.675028812084704 1.0076225527246347 1.256598336233826 0.6156145587760488 0.08109728296962389 0.10960079721342829 8.14845435412877 0.019889233306416784 0.04577942437840122 15590.381129187757 -4.192856732269015 0.24897578350919125 DLLVEGLAEILHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLLVEGLAEILHQK 14 0 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 0 ; 204.13 1.4067e-08 241669000.0 298220.0 295020.0 269520.0 258083.0 251874.0 338250.0 308270.0 285080.0 351470.0 319160.0 False True 296614.41665535665 304839.5623566437 307466.07329016394 290756.2813381539 283948.66092583904 314867.5736548539 293357.80239423993 306354.1172069079 264854.9279567102 298790.935553377 0.9927155792260252 1.0202436757061064 1.0290341396090885 0.9731094445675116 0.950325552547137 1.0538056419673578 0.9818162718053188 1.025312620811349 0.8864222318732143 1.0 18.188776856062784 1.2616325119702867 24.99999960518409 0.9432109865798095 1.0036343960489722 0.2816896169865988 0.03837569344921961 237.57391506198988 257428.75462773594 0.024017342625587395 0.008760326339991608 18.265539823698965 -1.2616325119702867 0.06042340946916269 DLLVGPGVELLLT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLLVGPGVELLLTPR 15 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;Q5VY93 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 DLLVGPGVELLLT(1)PR;DLLVGPGVELLLT(1)PR;DLLVGPGVELLLT(1)PR;DLLVGPGVELLLT(1)PR 146.78 4.2755e-05 75513000.0 111166.0 124277.0 114446.0 119339.0 108765.0 104157.0 93649.0 77688.0 99441.0 81741.0 True False 110567.49460770359 128413.4848179672 130559.00201753537 134447.3051638968 122615.57804933761 96956.87174920506 89118.84009607864 83485.4730516707 74935.09799113219 76524.21939800913 1.444869290761823 1.678076376709934 1.7061134768129635 1.7569248823646884 1.602310732653192 1.267008961501769 1.1645834586376347 1.0909679799209122 0.9792337456118072 1.0 16.22362880285134 2.538717983522061 1.7193210151047047 1.0523280758337126 1.661191746615999 0.9088911880452065 0.08734768794920113 0.10302784009247014 0.6143887734444639 0.03912752807501349 0.0324631249672945 345.71480915320825 -2.538717983522061 0.6088636707822865 DLLVSSGSNNSLPCGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLLVSSGSNNSLPCGSPK 18 0 Q5THK1-4;Q5THK1-2;Q5THK1;Q5THK1-3 Q5THK1-4 PRR14L Protein PRR14L 1 DLLVSSGSNNSLPCGS(1)PK 116.06 0.00017966 127560000.0 50539.0 34178.0 31305.0 30895.0 30856.0 52896.0 38762.0 38051.0 65568.0 47996.0 True False 50266.903639410746 35315.59406896271 35712.47189206214 34806.30383226429 34785.328702159386 49239.424023790525 36886.93397478033 40890.5588390629 49409.64496618658 44932.85418855707 1.1187115652273005 0.7859637387102919 0.7947964253995007 0.7746292653968179 0.7741624548528697 1.095844564361776 0.8209345843018855 0.9100369780087638 1.0996329046635458 1.0 15.45548308603339 2.7617450893416593 24.984117361892064 0.9603245494064567 0.8388988805541504 0.2169538659779674 0.12355919169029657 1360.4606211752393 1466061.4292528268 0.03764861997951821 0.039908963174351546 577.7568314795204 -2.7617450893416593 -0.12142566885230632 DLLYFDGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLLYFDGLR 9 0 Q9Y446;Q9Y446-2 Q9Y446 PKP3 Plakophilin-3 0 ;; 160.11 0.00015249 182958000.0 334864.0 394055.0 372495.0 358095.0 329640.0 381816.0 395442.0 329644.0 444520.0 403373.0 False True 333061.1294308877 407170.8824637221 424939.0582154189 403429.7902836927 371617.70007064514 355421.9586181865 376312.95972486184 354243.70917831466 334974.0022628301 377629.38979500014 0.8819788354176915 1.0782287964524129 1.125280684445936 1.0683220140855525 0.98408045060365 0.9411925242660028 0.996513962880768 0.9380724031321275 0.8870443120030305 1.0 18.52661152425707 3.0709267618605196 4.3364415184380505 0.9522926345228789 1.0470292814993378 0.26880693552106416 0.06609419311624082 0.2678374943903171 9.84546964917958 0.019842010403011697 0.02378540733428458 1177.4074022691884 -3.0709267618605196 0.0947366469764589 DLMHGLITLMLDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLMHGLITLMLDSR 14 0 Q14008;Q14008-3;Q14008-2 Q14008 CKAP5 Cytoskeleton-associated protein 5 0 ; 127.71 7.7969e-05 86058000.0 110853.0 142469.0 155110.0 130313.0 114381.0 120736.0 142027.0 107580.0 182545.0 139011.0 False True 110256.17976492603 147210.994540671 176948.13975971122 146810.6124387071 128946.74236069791 112389.80450197315 135156.61141417167 115608.16588017119 137559.23072767994 130139.19896669537 0.8472172922559811 1.1311810408357021 1.359683640015296 1.128104472782856 0.9908370681895573 0.8636122351631765 1.0385541980226904 0.888342381066577 1.0570161167419163 1.0 16.989696053225984 3.2027700077019867 4.811359815999414 0.9597943615999214 1.1358169127571502 0.22385383343152399 0.128561212724715 0.25464495464639925 13.681553623786725 0.03797330280315346 0.047315210069570554 1595.034230349803 -3.2027700077019867 0.17602255115722887 DLMLMSHLQDNIQHADPPVQILYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLMLMSHLQDNIQHADPPVQILYNR 25 0 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 190.37 5.0325e-18 453960000.0 284210.0 310730.0 332780.0 327290.0 291190.0 363550.0 356650.0 235580.0 376570.0 327400.0 False True 282679.84493869933 321072.4602097483 379632.53142438736 368724.8804422004 328271.32048164983 338418.6442046474 339397.4769646925 253160.1758510012 283769.3692794785 306505.0516987582 0.9222681432883039 1.0475274662856369 1.238584908536845 1.202997726786551 1.0710143883836671 1.104120934806826 1.1073144637702805 0.8259575966134944 0.9258228133818004 1.0 18.225551326495403 1.7526275554178035 24.999999999999975 0.9047855891942538 1.1056050619291338 0.4586441790721184 0.09004346106150515 3.751846993655792 6677.128577850644 0.0433202918058709 0.02402333472319451 56.575389868495655 -1.7526275554178035 0.20081947273488 DLMPHDLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLMPHDLAR 9 0 P55084-2;P55084;B5MD38;C9JEY0;C9JE81;C9K0M0 P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase 0 ;;; 147.75 9.1645e-05 1482160000.0 1148290.0 1349890.0 1540110.0 1171640.0 1377170.0 2330090.0 1250850.0 921770.0 1723540.0 1463480.0 False True 1142107.7342270114 1394820.272624263 1756944.1011239025 1319969.5038690434 1552544.4363738946 2169016.3627418703 1190341.6067889691 990557.1580532192 1298796.6612527638 1370079.4534517354 0.8336069352398657 1.0180579448222484 1.282366578593316 0.9634255156104659 1.133178395210922 1.583131808361419 0.8688120997581998 0.7229924918278574 0.9479717822062188 1.0 20.3858281295005 2.041090823242306 24.999946520941652 0.8436308572839704 1.13709484805259 0.2624549157984216 0.20159262676151177 172.2926350170476 104823.33075707109 0.07641152879573669 0.05643359760130047 109.92356966276597 -2.041090823242306 0.2934639907686196 DLMSWINGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLMSWINGIR 10 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 136.57 0.00026585 122380000.0 76595.0 114210.0 102950.0 102470.0 97229.0 129750.0 125660.0 83156.0 117730.0 108290.0 False True 76182.62103050444 118011.410808597 117444.46514255847 115442.69149351414 109610.53682856669 120780.68789864684 119581.34573218352 89361.52297761211 88717.01900117657 101378.83948826665 0.7514647180324218 1.1640635403234751 1.1584711931541811 1.1387257151121286 1.0811973917027602 1.1913796657006093 1.1795493648950637 0.8814612933890865 0.8751039117136912 1.0 16.629397028640525 1.701739331476374 7.718787558004513 0.9104887284643397 1.1047228423197641 0.2899568896325935 0.12509537281117594 0.13795773715370968 17.59226856474546 0.05997428004327816 0.03148406001187356 50.319849262990736 -1.701739331476374 0.19423411385542444 DLMVGDEASELR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLMVGDEASELR 12 0 P61160 P61160 ACTR2 Actin-related protein 2 0 ;;; 219.32 7.495999999999999e-11 2591540000.0 1657380.0 1756650.0 1608030.0 1603530.0 1570310.0 1756560.0 1770100.0 1538680.0 2070980.0 1809270.0 False True 1648456.850232228 1815119.0333326494 1834426.6467526827 1806536.7335863635 1770279.6705434262 1635133.1416974738 1684473.5005613398 1653504.1148587246 1560614.72871024 1693800.839606023 0.97322944450521 1.0716248279548881 1.083023814759337 1.0665579396020153 1.0451521980324394 0.965363284433018 0.9944932492495088 0.9762092898969921 0.9213684939920316 1.0 20.69183281908027 2.771559829953655 5.751043463780377 0.9723810751606115 1.0527126360852777 0.5525643618599596 0.03426864701900784 0.14280135158755897 14.283823497758632 0.010638212355074315 0.011071561164120374 590.962373047144 -2.771559829953655 0.0803315609246662 DLNES(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLNESPVK 8 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK 154.05 0.0004523 6112990000.0 4686020.0 3700410.0 3588800.0 3061220.0 3217870.0 4236590.0 4358230.0 4208140.0 6536700.0 4246480.0 True False 4660790.988985762 3823575.909904918 4094071.8455912014 3448770.138126038 3627646.6706902226 3943724.5051601403 4147405.764844614 4522172.775301941 4925817.872292451 3975466.0108055593 1.1723885894930173 0.9617931330596728 1.0298344482038746 0.8675134257850703 0.9125085363150024 0.9920156516093601 1.043250213577908 1.1375201707197091 1.2390542036842416 1.0 21.922692554770702 1.9273938336928573 2.658224895562857 1.1405804824983137 0.9813206777057596 0.2936515650214555 0.0930594439843099 0.3083098612849027 3.9532691962198374 0.049786572871875635 0.026326571546241295 84.60457217637475 -1.9273938336928573 -0.15925980479255408 DLNKDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLNKDGK 7 1 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ; 110.41 0.006211 873200000.0 1233430.0 1093120.0 999880.0 862130.0 959410.0 717170.0 1190700.0 1164110.0 1927810.0 1247280.0 False True 1226789.3499269553 1129503.8383950056 1140654.4128872424 971275.5696038204 1081585.1766314094 667593.7259365902 1133101.2920842818 1250981.7994308032 1452727.056830528 1167677.522549869 1.0506234180546725 0.9673080251887497 0.9768573864438052 0.8318012043966011 0.9262704434607435 0.5717278212898704 0.970388887515722 1.0713418519001905 1.2441166578750213 1.0 20.155210469522945 1.7428732930183148 3.3852692268278126 1.125694319386192 0.8878311431082138 0.3393851647430013 0.1339721439419577 0.23726287828490414 5.726192852626936 0.07666159399773675 0.03702930603087523 55.31886908736617 -1.7428732930183148 -0.23786317627797815 DLNYCFSGMSDHR ddPTM_BT-474_Trastuzumab_2h_R1 20 DLNYCFSGMSDHR 13 0 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7;P55795 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;;;;;;;;;;;;;;;; 246.5 3.4559e-17 52882610000.0 9628501.0 15088221.0 15961207.0 16387132.0 14749960.0 15663161.0 16270043.0 13759067.0 16605631.0 15403042.0 False True 9576662.220443033 15590423.314962788 18208406.20830171 18461741.23098951 16628279.976137647 14580403.54718503 15482998.862489982 14785838.446666539 12513395.74410539 14420006.672352295 0.6641232863507974 1.081166165120752 1.2627182928571714 1.2802865942070951 1.1531395479878181 1.0111232177957494 1.0737164839303284 1.0253697368265202 0.8677801632434414 1.0 23.781568496346953 1.513612278367156 3.0440610980595655 0.934155917640338 1.0911786602420606 0.0966531603338947 0.16366614158471554 0.5058702706984882 9.8643738362475 0.12249806915730868 0.04492009368675573 32.62963970595829 -1.513612278367156 0.15702274260172255 DLPAIQES(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLPAIQESPTR 11 0 P49796-1;P49796-4;P49796-6;P49796 P49796-1 RGS3 Regulator of G-protein signaling 3 1 DLPAIQES(0.893)PT(0.107)R;DLPAIQES(0.945)PT(0.055)R;DLPAIQES(0.978)PT(0.022)R 211.83 8.395799999999999e-09 807310000.0 380920.0 440768.0 344377.0 397825.0 416740.0 382164.0 369925.0 397374.0 447416.0 401136.0 True False 378869.169044191 455438.69643011695 392862.288221456 448189.6042100842 469809.36878849816 355745.9021972909 352030.3144992674 427028.0657042855 337156.32186724176 375535.15705019195 1.0088780289445802 1.2127724605268997 1.0461398376316287 1.1934690954918548 1.2510396429426873 0.9473038556274077 0.9374097415124756 1.1371187429122949 0.8978022843868632 1.0 18.51858845149109 2.724730555135194 24.901963559234396 1.0004341840737858 1.1438488147502262 0.42698843823430677 0.09081726868677625 814.225943733299 1466066.5456688574 0.029239577884811782 0.027696324239298516 530.5551752009854 -2.724730555135194 0.14341463067644034 DLPAIQESPT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 DLPAIQESPTR 11 0 P49796-1;P49796-4;P49796-6;P49796 P49796-1 RGS3 Regulator of G-protein signaling 3 1 DLPAIQES(0.025)PT(0.975)R 193.28 1.1416e-05 774080000.0 200000.0 236030.0 222190.0 220830.0 227650.0 199450.0 191840.0 223540.0 246490.0 192580.0 True False 198923.222222089 243886.11586685188 253472.42068989866 248787.05535778974 256639.87811273613 185662.4909547985 182559.96630003263 240221.6899131198 185745.84229678093 180289.3795239671 1.103355187905812 1.352748101473334 1.4059198681539797 1.3799318407700036 1.4234886092035124 1.029802706321462 1.0125941238583256 1.3324228556745656 1.030265026077637 1.0 17.45995488751659 2.7389097153598714 24.999949056021553 1.1147334682768428 1.340829481515044 0.49739596079229587 0.1242849290412765 31.295715552731185 2241244.9886188568 0.04065357144878264 0.04076792601367312 548.162996529462 -2.7389097153598714 0.22609601323820128 DLPDGHAAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLPDGHAASPR 11 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 DLPDGHAAS(1)PR;DLPDGHAAS(1)PR;DLPDGHAAS(1)PR;DLPDGHAAS(1)PR 146.84 2.2918000000000007e-05 4749910000.0 5000850.0 6050600.0 5203430.0 5432090.0 5272490.0 5743000.0 5175100.0 4529000.0 5654900.0 5134430.0 True False 4973925.979246666 6251990.563335059 5936027.714975658 6119792.0370352585 5943910.349003379 5345999.927567851 4924760.642198172 4866976.977796014 4261325.666777818 4806746.281593324 1.0347802209352157 1.30066997446403 1.2349367674567595 1.2731672691920595 1.2365766780253507 1.1121868337506213 1.0245518181512443 1.0125304504698605 0.8865301842736931 1.0 22.196629223861482 2.321545019768437 1.6260945716390145 0.9677351804783686 1.2260173961405034 0.6916018042208434 0.074317030328273 0.20500280684258063 1.0922430014734308 0.03699287242839948 0.02460506881572503 209.6742121189203 -2.321545019768437 0.25828221566213483 DLPEHAVLK ddPTM_BT-474_Trastuzumab_2h_R1 10 DLPEHAVLK 9 0 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;;;;;; 138.66 0.00013038 30877690000.0 20493350.0 20940160.0 20294660.0 17337210.0 16083820.0 21152970.0 21749900.0 18852590.0 29057160.0 21249450.0 False True 20383016.080625247 21637140.56700596 23151971.72365304 19532099.008375823 18131999.140730027 19690714.97263534 20697774.244313348 20259465.99731225 21896412.263995804 19893291.90843055 1.0246175532158737 1.087660135215549 1.163807972567954 0.9818434826313659 0.9114629807973558 0.9898168218348337 1.040439879914589 1.0184069127707578 1.1006932570429107 1.0 24.245778694882926 3.7160313454938 24.70320542077192 1.0052287242288296 1.0915917275600693 0.34183649743916555 0.05463232319873191 772.8909563054028 847470.0368891592 0.01539252819860396 0.023865641316729844 5200.3352894572345 -3.7160313454938 0.0863630033312397 DLPHWNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLPHWNK 7 0 Q7LG56;A0A0C4DGZ6;H0YAV1;Q7LG56-2;Q7LG56-6 Q7LG56 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B 0 ; 122.79 0.0067645 507270000.0 915780.0 1007240.0 938490.0 886570.0 876510.0 1091780.0 1061520.0 916140.0 1179080.0 1105620.0 False True 910849.5422327241 1040765.3745105629 1070621.2344986864 998809.6710979303 988128.3530182056 1016307.8183736773 1010170.2221998046 984507.0188646576 888511.5328625423 1035058.3850310964 0.8799982256125188 1.0055136884662743 1.0343583028570138 0.9649790635413508 0.9546595315862487 0.9818845323813731 0.9759548222677853 0.9511608553705692 0.8584168252845453 1.0 19.98128071813006 1.5063043753858996 5.406284270874285 0.9217904301295985 0.9737295873902769 0.0965751291857343 0.04918730561334825 0.2610959892782483 16.996380408690648 0.02764053671210764 0.012030841332542884 32.08517226716327 -1.5063043753858996 0.05193915726067844 DLPHYF ddPTM_BT-474_Trastuzumab_2h_R1 3 DLPHYF 6 0 A0A087X2I2;A0A087WT12;P36969-2;P36969 A0A087X2I2 GPX4 Glutathione peroxidase;Phospholipid hydroperoxide glutathione peroxidase, mitochondrial 0 ;; 122.76 0.044387 505869000.0 547465.0 665910.0 585855.0 649019.0 552308.0 638299.0 597823.0 554283.0 721720.0 608330.0 False True 544517.5092690791 688074.4117989043 668338.2916570543 731184.738854583 622641.1500140086 594174.8925242262 568904.0175843637 595646.4120520437 543861.7765525279 569505.8585824845 0.9561227528447167 1.2081954933906038 1.1735406784410725 1.2838932696399674 1.0933006932778169 1.0433165586797362 0.9989432224637358 1.0459004118669186 0.9549713463988142 1.0 19.11935115764223 2.834121107180951 3.0609909026357944 1.0116661390439052 1.1621445305232943 0.415946022291959 0.0813164114171023 0.252574477791572 4.568168125117325 0.026093193459014043 0.027612370556813336 682.528997362532 -2.834121107180951 0.15047839147938902 DLPLLLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLPLLLFR 8 0 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 ; 129.4 0.0025415 994780000.0 259870.0 324410.0 338230.0 275420.0 204030.0 228530.0 272250.0 227000.0 448200.0 276370.0 False True 258470.88879427122 335207.79074001394 385849.8440521376 310288.1437605508 230012.0111194447 212732.25900175507 259080.22740400254 243939.89268264401 337747.1155723035 258731.82998773875 0.9989914607975374 1.295580024908027 1.4913118500743527 1.1992654470663904 0.8889977361128893 0.8222113955280895 1.0013465580028569 0.942829077868789 1.3053945298818057 1.0 17.9810980241714 3.376703444107284 5.58370584321235 0.9813512925728021 1.2774856048882646 0.3673155042434687 0.16290493702616865 0.20415537162637604 9.521076635659348 0.04605432682726629 0.06275802218622327 2380.69326928167 -3.376703444107284 0.2961343123154625 DLPTIPGVT(ph)SPSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLR 26 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVT(0.675)S(0.266)PS(0.05)S(0.009)DEPPMEASQSHLR 160.41 6.729300000000001e-11 86749000.0 44843.0 48711.0 43337.0 38323.0 42990.0 51377.0 42523.0 43830.0 54456.0 48572.0 True False 44601.57027052565 50332.3161885787 49438.47290804332 43174.6878706543 48464.521678306715 47825.42891844913 40466.00003636513 47100.81716423033 41036.04847301513 45472.093375418626 0.980855882360508 1.1068836390054437 1.0872266754881543 0.9494765836752468 1.0658080171982085 1.0517534023252748 0.8899084478534323 1.0358180956254843 0.9024446737963125 1.0 15.472693801771701 2.2841733858061346 24.999678639026772 0.9656435310257933 1.042518602053716 0.31768360700746356 0.05921419886589029 158.35001930310244 86788.61892941297 0.019822959266021047 0.016585019447594187 192.38596488178734 -2.2841733858061346 0.07687507102792279 DLPTIPGVTS(ph)PSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLPTIPGVTSPSSDEPPMEASQSHLR 26 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVT(0.057)S(0.884)PS(0.045)S(0.013)DEPPMEASQSHLR;DLPTIPGVT(0.425)S(0.463)PS(0.096)S(0.015)DEPPMEASQSHLR;DLPTIPGVT(0.068)S(0.824)PS(0.093)S(0.016)DEPPMEASQSHLR;DLPTIPGVT(0.129)S(0.689)PS(0.157)S(0.025)DEPPMEASQSHLR 168.59 5.8801e-12 1737359000.0 535302.0 599972.0 628106.0 616918.0 552220.0 624784.0 611722.0 594707.0 673249.0 672493.0 True False 532419.9935096438 619941.7053292668 716537.8652047788 695019.7555459725 622541.9437356251 581594.1526633376 582130.6698550276 639087.0562009556 507335.80502440355 629573.920989776 0.8456830496927303 0.9847004214447669 1.1381314271694793 1.103952581856165 0.9888305772845615 0.9237900956078237 0.9246422865480813 1.0151104340475599 0.80583993095966 1.0 19.264016255374386 2.9965745532792427 24.969373928453866 0.942275415505132 1.0270635922544828 0.159771432026248 0.08991432780630924 269.43222573728326 1964016.033107553 0.02714565130508302 0.03182551651954007 992.1436412266676 -2.9965745532792427 0.0847881767493508 DLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVTSPSSDEPPMEAS(0.432)QS(0.284)HLRNS(0.284)PEDKR;DLPTIPGVTSPSS(0.001)DEPPMEAS(0.333)QS(0.333)HLRNS(0.333)PEDKR;DLPTIPGVTSPS(0.004)S(0.004)DEPPMEAS(0.39)QS(0.39)HLRNS(0.212)PEDKR 255.25 1.4540999999999997e-59 2716630000.0 1351640.0 1332910.0 1318510.0 1357830.0 1318580.0 1646080.0 1711370.0 1658050.0 2377240.0 1676830.0 True False 1344362.9204213205 1377275.1035888903 1504144.7473056316 1529731.1387785524 1486493.3471640297 1532290.3640555271 1628584.4950317258 1781782.1104073045 1791401.0553839866 1569813.2737936107 0.8563839679941889 0.8773496355146541 0.9581679378151233 0.9744669409513936 0.9469236704641756 0.9760972146404358 1.0374383515665455 1.1350280572551472 1.141155502561707 1.0 20.582161532904152 2.296279708841889 1.4569918214720512 1.1073053279151097 0.9204346343602525 0.6898033761540727 0.049839473959537216 0.2225111733315152 0.938621103076832 0.028671866014505287 0.017984547538496654 197.82433242657555 -2.296279708841889 -0.1868706935548572 DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVTSPSSDEPPMEAS(0.122)QS(0.558)HLRNS(0.321)PEDK 119.35 3.7761e-07 697380000.0 324710.0 275300.0 291800.0 256780.0 272370.0 367460.0 345130.0 310150.0 494170.0 350790.0 True False 322961.7974386725 284463.194077636 332882.9036289322 289288.3216717535 307054.70503652917 342058.3551077975 328434.7433753658 333294.9679097889 372388.42503874487 328402.2818735712 0.9834334755414604 0.8662034637967255 1.013643698605864 0.8808961984713739 0.9349956501055603 1.0415833688984037 1.0000988467607759 1.0148984532272565 1.1339398219592989 1.0 18.325104626023442 2.7420550956167635 23.571238825719348 1.0338308863040977 0.9332367020428524 0.4734277596270251 0.053799438071349855 120.46718254462738 812585.4727713452 0.015919491614461337 0.016270175898530203 552.147481562565 -2.7420550956167635 -0.10059418426124533 DLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVTSPSSDEPPMEAS(0.08)QS(0.448)HLRNS(0.471)PEDK 233.26 9.512299999999998e-47 650890000.0 315600.0 287820.0 289370.0 255080.0 284560.0 380500.0 373640.0 327430.0 494430.0 375180.0 True False 313900.8446664564 297399.9147091362 330110.7807508709 287373.1018460586 320797.02928073885 354196.9306006559 355565.6057565896 351864.48925585084 372584.35152256634 351235.69119224214 0.8937042918415964 0.8467246415067767 0.9398554561193243 0.8181773921397141 0.9133383574767654 1.0084309182770181 1.0123276610917584 1.0017902453519865 1.060781580191517 1.0 18.422079927766177 2.8091061910401542 3.4200764714526506 1.0162630632396639 0.8762596034683775 0.8034378764763155 0.03359275778894367 0.09981631409811832 2.295400160102319 0.010157632956169121 0.01063165891037438 644.3267931165175 -2.8091061910401542 -0.14000345977128636 DLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVTSPSSDEPPMEAS(0.012)QS(0.068)HLRNS(0.92)PEDKR;DLPTIPGVTSPSSDEPPMEAS(0.132)QS(0.132)HLRNS(0.736)PEDKR 271.46 9.227399999999998e-74 2006240000.0 941760.0 947330.0 937320.0 919100.0 925840.0 1271040.0 1215670.0 1060830.0 1705940.0 1264310.0 True False 936689.6687993722 978861.3063769209 1069286.5086685086 1035457.9657625536 1043740.2361163873 1183175.9965063282 1156863.3977896192 1139994.5213855898 1285533.9454248443 1183620.6533697518 0.7913765834793686 0.8270059360573982 0.9034030503136834 0.8748224887886326 0.8818198914870852 0.9996243248525973 0.9773937236529668 0.963141795591384 1.0861030024822116 1.0 20.17477534522866 3.4025324612975028 0.44959448300423954 1.0304729934380579 0.765249662371579 0.8054918645779354 0.03777333727878181 0.7381018672999542 0.257578566288336 0.032972444232809005 0.09303931019619772 2526.5765517853542 -3.4025324612975028 -0.2652233310664789 DLPVSEQQER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLPVSEQQER 10 0 Q9UNM6;J3KNQ3;A0A087WUL9;Q9UNM6-2;H0YD73;E9PL38 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ; 146.11 6.803899999999999e-05 647580000.0 234980.0 246650.0 238940.0 228090.0 233140.0 287470.0 269460.0 224750.0 298900.0 271650.0 False True 233714.89378873253 254859.5961469267 272580.6750962891 256966.17061340527 262828.997070957 267597.8755315917 256425.19036283766 241521.98625737542 225240.1000548005 254313.06442873398 0.9190046697511537 1.0021490508929236 1.0718311924265072 1.0104324415681554 1.0334860211029757 1.0522380206172244 1.008305219941603 0.9497034169279062 0.8856804134728966 1.0 17.95624605169257 1.7086314214270735 3.838182420889378 0.9359101826549332 1.0182680656254517 0.3165781419788656 0.045954080595548 0.20015177215574106 6.7514542498200525 0.025409699539829182 0.012145063456457857 51.12477638159185 -1.7086314214270735 0.08235788297051849 DLPVTEAVFSALVTGHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLPVTEAVFSALVTGHAR 18 0 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 ; 219.95 7.0489e-19 292720000.0 141022.0 192141.0 202200.0 172098.0 217210.0 334460.0 195272.0 143106.0 228800.0 228677.0 False True 140262.75322101725 198536.29703331285 230668.00244609354 193885.58915439443 244870.40599546427 311339.56743415334 185825.94734851946 153785.2963975437 172415.30576292524 214082.6380797706 0.655180422285123 0.9273815887831831 1.0774717861994159 0.9056576978566079 1.1438125398296972 1.45429620181597 0.8680103581275832 0.7183454846078683 0.8053679985888466 1.0 17.707808273561113 -2.721449426829996 2.097005532706841 2.5643166001560385 0.9520297892722933 0.004525888804966294 0.21882473113564002 10007188.771229612 1462114.013397875 73827825.6420473 0.05755826093874468 0.001899111978968319 2.721449426829996 -1.6122868108837451 DLPYDQSTWEEDEMNIPEYEEHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLPYDQSTWEEDEMNIPEYEEHK 23 0 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 0 ; 180.63 4.493e-17 175903000.0 177622.0 169544.0 145739.0 135063.0 143657.0 187369.0 189203.0 166492.0 236496.0 181941.0 False True 176665.70288765922 175187.1695484876 166257.7844139033 152161.96195167847 161950.8674282508 174416.6220491834 180050.52806435092 178916.4784692456 178214.72968404193 170329.3696124732 1.037200473938242 1.0285200370732697 0.976095812437788 0.8933395473597506 0.9508099971056967 1.0239961695743334 1.0570727084471392 1.0504147281018503 1.0462947763471984 1.0 17.37796769243062 2.561329137396707 5.000946030614096 1.0437216844481396 0.9756480140206366 0.3458096754874953 0.04017844176582744 0.2565915029317866 10.99101047163039 0.01478169124249766 0.013742105022406931 364.19093981003346 -2.561329137396707 -0.06807367042750301 DLQEQDADAGS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLQEQDADAGSER 13 0 Q6P158-2;Q6P158;A0A087WW12;A0A087WZ11;Q6P158-3 Q6P158-2 DHX57 Putative ATP-dependent RNA helicase DHX57 1 DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER 149.97 4.5785e-05 2386900000.0 2522500.0 2817000.0 2628900.0 2684500.0 2921700.0 3150500.0 2914900.0 2556800.0 3067600.0 3028600.0 True False 2508919.1402760968 2910762.142087543 2999026.2691915696 3024357.424752013 3293761.176727347 2932713.3504792796 2773895.1510006483 2747601.399167331 2311631.0837340467 2835312.1550850896 0.884882864053042 1.0266108219749754 1.0577411251924629 1.0666752933456987 1.161692609690272 1.034352900162863 0.9783385388538998 0.9690648679509765 0.8153003822130029 1.0 21.435076147455305 1.8123346404883534 1.9479463956439966 0.9121050669177174 1.0441902026459529 0.2922812113459351 0.07737840275707929 0.3842869770280901 2.812120417608475 0.05231712201972377 0.022993708975177555 64.91344237631611 -1.8123346404883534 0.13208513572823544 DLQGLTVEHAIDSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLQGLTVEHAIDSFR 15 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 ;;; 221.78 1.4901e-12 1519850000.0 895740.0 1113050.0 1053130.0 1102490.0 1061850.0 1127360.0 1151360.0 1004040.0 1314930.0 1090470.0 False True 890917.4353660693 1150097.1963970666 1201401.5500299444 1242065.1209591546 1197070.3034219593 1049428.2567199871 1095664.3181776777 1078966.5632118133 990883.1206592798 1020875.2710016635 0.8726995948211361 1.126579543129312 1.1768348045605532 1.2166668703224282 1.1725921250373872 1.0279691227022356 1.0732597304493747 1.056903417939737 0.9706211412948067 1.0 19.961375180006424 1.7353253774137403 1.1258203309361956 0.9894833471148805 1.1148271634950082 0.1772913137331501 0.09174050820749478 0.8050668409051687 1.9069000055034646 0.08054500690239162 0.03172168946292824 54.36574921343705 -1.7353253774137403 0.1253438163801277 DLQHPNEFIR ddPTM_BT-474_Trastuzumab_2h_R1 5 DLQHPNEFIR 10 0 P53618;E9PP73;E9PP63;E9PKQ1 P53618 COPB1 Coatomer subunit beta 0 ;;;; 134.2 0.00017708 4926240000.0 3511220.0 3972860.0 4126800.0 3587560.0 3121760.0 3437650.0 3639790.0 3026330.0 4595780.0 3530660.0 False True 3492315.9816532154 4105094.2434554137 4707817.5692113675 4041744.7281591874 3519297.631878827 3200013.3468576744 3463719.452351932 3252170.1119923564 3463211.5992969275 3305330.2560498985 1.0565709660210407 1.2419618995535076 1.4243107963551997 1.222796034000353 1.064734038433011 0.9681372507332792 1.0479193254629025 0.9839168434197337 1.0477656787723562 1.0 21.656362996870044 3.1969426839957986 3.612634086197295 1.010674822465168 1.2532681169780704 0.6099110400961445 0.08597906990239311 0.1493623047044058 4.0388525692556785 0.0260272894970518 0.033043831647160786 1573.7751518208343 -3.1969426839957986 0.24259329451290235 DLQNVNITLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLQNVNITLR 10 0 P35232;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;P35232-2 P35232 PHB Prohibitin 0 138.25 0.00016229 140830000.0 68055.0 66859.0 79159.0 62714.0 76388.0 96934.0 77674.0 59756.0 86700.0 70595.0 False True 67688.59944162134 69084.36139788099 90303.89913763765 70653.58596978862 86115.55901285174 90233.18073809198 73916.61187650503 64215.296154819676 65333.946720479085 66089.56666057983 1.0241949351741668 1.045314183291316 1.3663866129039222 1.0690580910092586 1.3030129166245044 1.3653165741199054 1.1184308751201688 0.9716404479486761 0.9885667287851737 1.0 16.012134915804452 1.8920307925754631 4.2320650698087965 0.9884990265608704 1.1986153973089393 0.382650441252138 0.1178967017060283 0.24678411980255027 7.0636173529062996 0.05799243913200497 0.03310108257245197 77.9885404407565 -1.8920307925754631 0.21011637074806888 DLQS(ph)PDFTTGFHSDK ddPTM_BT-474_Trastuzumab_2h_R1 5 DLQSPDFTTGFHSDK 15 0 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 DLQS(0.998)PDFT(0.001)TGFHSDK;DLQS(1)PDFTTGFHSDK;DLQS(0.997)PDFT(0.003)TGFHSDK;DLQS(0.997)PDFT(0.003)TGFHSDK;DLQS(0.999)PDFTTGFHSDK 287.91 8.710700000000002e-35 1676030000.0 2201095.0 1761693.0 1702753.0 1459700.0 1616463.0 2035630.0 1780216.0 1838920.0 2399300.0 1952513.0 True False 2189244.5490846443 1820329.8865390925 1942485.8218056043 1644497.8703335882 1822309.9815231604 1894911.6894575898 1694100.1509944675 1976149.5482465515 1808024.6639728416 1827901.948709518 1.1976816101269714 0.9958575118453311 1.0626860063128558 0.8996641594996869 0.9969407728952281 1.0366593737674934 0.9268003418840309 1.08110259942646 0.9891256285651921 1.0 20.801757253557973 4.739596099904632 24.699863236638247 1.0016298940032777 1.197681682733703 0.5639253084493843 0.05242291416806672 53.39788332388504 1273516.7623998125 0.0120646195085751 0.07357537099332305 54903.003054788234 -4.739596099904632 0.19605178873042517 DLQS(ph)PDFTTGFHSDKIEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLQSPDFTTGFHSDKIEAK 19 1 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 DLQS(0.992)PDFT(0.007)T(0.001)GFHSDKIEAK;DLQS(0.684)PDFT(0.307)T(0.009)GFHSDKIEAK 203.33 3.0915e-16 842290000.0 378530.0 282230.0 289140.0 256453.0 212750.0 418070.0 361480.0 383200.0 567990.0 390900.0 True False 376492.03653863625 291623.8549383626 329848.3987500671 288919.92350528116 239842.45143195527 389169.80493092287 343993.8314123009 411796.329850172 428016.47517606575 365952.4273336728 1.0288004899482563 0.7968900686439827 0.9013422896340395 0.78950131745361 0.6553924322334624 1.0634437043263019 0.9399960369675312 1.1252728472127307 1.1695959452833562 1.0 18.48129658931054 2.7012584307743506 23.95899471437411 1.0621168723569794 0.8335285333459632 0.5309390980942883 0.10585711464686902 274.8407591387852 176528.29178939437 0.034538372631450265 0.03256404581630963 502.6416018814581 -2.7012584307743506 -0.22858833901101616 DLQSNVEHLTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLQSNVEHLTEK 12 0 Q01813;Q01813-2;B1APP6 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 ; 173.68 3.2425e-05 1372050000.0 1496120.0 1831270.0 1876030.0 1591350.0 1805790.0 2348500.0 2233700.0 1637550.0 2172300.0 2226800.0 False True 1488065.0561545577 1892222.714923907 2140158.7172549213 1792814.7468352094 2035746.652744116 2186153.722774352 2125647.39743736 1759752.2963104113 1636965.772328683 2084683.7175406034 0.7138085473752805 0.9076785600629378 1.0266107511885614 0.8599936439999997 0.9765254247516162 1.0486740527495737 1.0196498296370269 0.8441339477560996 0.7852345938883651 1.0 20.99139708788708 4.718625461759821 4.058768905693335 0.9415429483831136 0.6980937620097387 0.4031267815404187 0.08378142666828207 0.2224942845718103 7.775179106823014 0.02119344766864883 0.1530705146929145 52314.90749958454 -4.718625461759821 -0.24344918637337487 DLQSS(ph)PPSLPLGFLGEGDAVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLQSSPPSLPLGFLGEGDAVTK 22 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 DLQS(0.116)S(0.878)PPS(0.006)LPLGFLGEGDAVTK;DLQS(0.36)S(0.638)PPS(0.003)LPLGFLGEGDAVTK 263.19 1.3643999999999999e-37 295740000.0 188139.0 165553.0 135890.0 149890.0 142108.0 180792.0 178933.0 178670.0 225780.0 191324.0 True False 187126.080528208 171063.33152609805 155022.130822946 168866.05863143218 160204.61145989323 168294.27457859085 170277.3271995605 192003.2626678768 170139.5442969987 179113.53851928256 1.0447344297654129 0.9550552847108323 0.8654964449058495 0.9427877983285603 0.8944304980198151 0.9395954988655033 0.9506669825588265 1.0719639858335253 0.9498977336025453 1.0 17.450514863778764 1.9319605314561303 9.549565984200468 1.01448613739373 0.9364189198378591 0.2494176499011711 0.05158377701822543 0.5974359649617499 80.93227265173785 0.02164780615597377 0.013739795057427125 85.49890082257316 -1.9319605314561303 -0.07806721755587087 DLQSSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLQSSDR 7 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 121.67 0.010272 102750000.0 103830.0 104240.0 98528.0 96586.0 100980.0 85838.0 111160.0 87428.0 132700.0 119060.0 False True 103270.99081659742 107709.56538558929 112399.88597927162 108813.7776968142 113839.20444464785 79904.2211009174 105782.76612756265 93952.32131038854 99997.86308889925 111461.48886760557 0.9265172380683263 0.9663388357706864 1.0084190254517476 0.9762455068769418 1.0213321713283998 0.7168773888874567 0.9490521542665904 0.8429128505719631 0.8971516898332225 1.0 16.766185804161996 DLREEVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLREEVEK 8 1 Q9NQT8;E7ERX9 Q9NQT8 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein 0 79.148 0.026455000000000003 0.0 163300.0 166510.0 136670.0 174390.0 153460.0 176330.0 181020.0 162840.0 230600.0 185000.0 False True 162420.8109443357 172052.18469257944 155911.94804306456 196467.75611939037 173002.22137131754 164140.7221361727 172263.37103644642 174991.94768476553 173771.7198816897 173193.14161353154 0.937801632507865 0.9934122280459693 0.9002201045060505 1.1343853127729187 0.9988976454815975 0.9477322289264856 0.9946315970227052 1.0103861276172696 1.0033406534621863 1.0 17.402022275424923 DLRPVDNR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLRPVDNR 8 1 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 ;; 89.24700000000001 0.012805 738990000.0 860590.0 947160.0 929850.0 959050.0 980360.0 914270.0 947200.0 900760.0 1059450.0 977260.0 False True 855956.6790605384 978685.6480296891 1060764.7975989124 1080465.631666388 1105203.0349510312 851068.6668600835 901380.3173446154 967979.2851666014 798362.7434026713 914890.4301256194 0.9355838151493299 1.0697298996725872 1.159444631477087 1.1809781762806657 1.2080168275443441 0.9302410855289274 0.9852330811033305 1.0580275553146758 0.8726320847984516 1.0 19.803239446926572 2.727271469375761 24.973010513018533 0.9811844397806492 1.1150784887614231 0.4134908478725243 0.08359283613562443 817.0457489473149 1807404.5386000064 0.028437610720233517 0.027014768328655472 533.6683773934042 -2.727271469375761 0.13389404898077395 DLS(ph)LEEIQK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLSLEEIQK 9 0 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949;E5RGX5 STMN1;STMN2 Stathmin;Stathmin-2 1 DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK 176.78 5.5478e-05 481570000.0 713910.0 519063.0 417862.0 441831.0 410214.0 660370.0 601550.0 552940.0 878180.0 701510.0 True False 710066.3878828576 536339.6981747899 476693.33747838583 497766.7592980468 462452.32137113047 614720.1762437716 572450.7283558409 594203.1905724277 661764.3060091157 656739.0312070725 1.0812002243536074 0.8166709647042125 0.7258489519074776 0.7579369211285676 0.7041645149689867 0.9360189466947454 0.8716563218477946 0.9047782487973872 1.0076518595107813 1.0 19.32496067424138 1.6298053453965087 1.094716894998886 1.0076762186289034 0.8189485522353565 0.2784216225264765 0.10354514436798692 0.6143329256156235 1.3973484270286978 0.09331024671826668 0.035100466686003993 42.63883649539821 -1.6298053453965087 -0.188727666393547 DLS(ph)MVRMK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLSMVRMK 8 1 J3KS45;Q9UM00-1;Q9UM00 J3KS45 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 1 DLS(1)MVRMK 60.828 0.049764 373250000.0 163460.0 408100.0 366990.0 440380.0 411540.0 254030.0 290930.0 229210.0 117100.0 252160.0 True False 162579.94952211343 421683.3617983407 418659.00206573633 496132.0628468218 463947.17961131304 236469.50402229882 276856.6044394729 246314.81410479665 88242.27405960899 236066.93291496276 0.6887027654172929 1.7862872897587976 1.7734758396532726 2.10165844373274 1.9653204872129992 1.0017053261224056 1.1727885859355134 1.0434109134358323 0.3738019254538969 1.0 17.848836444590262 2.6917782310125697 8.685568162024218 0.9510739202903543 1.7001625060871433 0.452483897354648 0.4078173792282223 0.3757840894197237 66.49257181773424 0.13453582498988625 0.12714796323046954 491.78834378633627 -2.6917782310125697 0.7490885857967889 DLS(ph)PEPAPDEGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLSPEPAPDEGPR 13 0 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 DLS(1)PEPAPDEGPR 182.25 4.1902e-07 0.0 180210.0 194410.0 163510.0 182850.0 188880.0 201670.0 168820.0 165560.0 196430.0 200490.0 True False 179239.76938321325 200880.81932667317 186530.78674560218 205998.79125196728 212932.74842052994 187729.02758011638 160653.53164497222 177914.92789664565 148022.45852714783 187694.55655187537 0.9549545425078677 1.0702538369627856 0.9937996613878808 1.0975213934615784 1.1344641652496683 1.0001836549171925 0.8559306918449203 0.9478960453894314 0.7886347971217648 1.0 17.518027284704203 2.408315287351836 5.230479862007729 0.899322933027905 1.0524145375328346 0.5134428710194228 0.06985658351004544 0.15734881611675358 8.119319287863622 0.02371066400440087 0.01978981582214295 256.04440331449257 -2.408315287351836 0.15309160450492965 DLS(ph)PQHMVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLSPQHMVVR 10 0 A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590;A0A2R8Y5E8;D6RB22 A0A2R8Y3N3 HARS2 Probable histidine--tRNA ligase, mitochondrial 1 DLS(1)PQHMVVR;DLS(1)PQHMVVR 182.1 1.1693e-06 253500000.0 249720.0 270650.0 297840.0 253860.0 309710.0 455790.0 274660.0 231950.0 361940.0 293310.0 True False 248375.53526650046 279658.4216386201 339773.28312831116 285998.649971148 349149.7327050098 424282.3101142519 261373.64649690862 249259.2868182344 272744.7367475227 274590.70468467544 0.9045300187845797 1.0184555298758715 1.237380862977455 1.0415452711684936 1.2715278658319982 1.5451444745788971 0.9518663306431129 0.9077484509334348 0.9932773837363776 1.0 18.066923263314763 2.077455284717737 24.999995323070973 0.9499238901287246 1.1717369165056983 0.27226527938257483 0.16483670867226533 45.20538774779702 14588.661540121024 0.0651798973169126 0.04813853945071059 119.52404564934716 -2.077455284717737 0.22181302637697375 DLS(ph)PTLIDNSAAK ddPTM_BT-474_Trastuzumab_2h_R1 5 DLSPTLIDNSAAK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 DLS(1)PTLIDNSAAK;DLS(0.995)PT(0.005)LIDNSAAK;DLS(1)PTLIDNSAAK;DLS(1)PTLIDNSAAK;DLS(0.985)PT(0.015)LIDNSAAK 305.48 2.1843e-41 987337000.0 2446160.0 2153790.0 1959870.0 1765250.0 1878690.0 2579460.0 2558440.0 2442570.0 3312780.0 2698040.0 True False 2432990.1463539256 2225477.59815645 2235802.6605045754 1988730.4690048401 2117930.0356319603 2401148.001595711 2434678.483010089 2624846.9765191437 2496389.7579777217 2525848.7772917408 0.9632366625537337 0.8810810916964894 0.8851688512017105 0.7873513596238297 0.8385023104601067 0.9506301498264135 0.9639050860442223 1.0391940325634026 0.9883369821745206 1.0 21.268336836801968 2.4061046342677646 2.2937444597709162 1.0076323663556954 0.868700239820176 0.6370911003445686 0.04509261856023846 0.1911826976312164 2.057170637988494 0.0193799281848297 0.015303332366040054 254.74439325519603 -2.4061046342677646 -0.13893212653551945 DLSDLDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLSDLDFR 8 0 P78332;E9PGM9;P78332-3;F8WCA5 P78332 RBM6 RNA-binding protein 6 0 ; 103.74 0.010969 98765000.0 438130.0 510490.0 462940.0 477610.0 460620.0 519970.0 511540.0 456830.0 564540.0 537930.0 False True 435771.1567608191 527481.3510522783 528117.9280533862 538075.3770295437 519277.2266913622 484025.6977777217 486794.8559274324 490920.9743357366 425416.6814484343 503598.8468549561 0.8653140480409551 1.0474236673623694 1.0486877230787066 1.0684603040493406 1.0311326762051178 0.961133451358216 0.9666321894252401 0.974825453635578 0.8447530889024465 1.0 18.9419154540018 2.6483953902831328 4.480985061761786 0.9502750764575887 1.0192309411869047 0.1854427411586702 0.06514650806135719 0.37717512904845835 13.271339793679092 0.021447294663784797 0.020226962123075273 445.0362528915929 -2.6483953902831328 0.06895586472931603 DLSELGSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLSELGSVR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 141.2 0.0002496 137766000.0 250570.0 321220.0 291300.0 321720.0 295610.0 319950.0 325000.0 294920.0 349280.0 338290.0 False True 249220.9589609444 331911.6135184093 332312.5079750107 362449.719013305 333254.1812822577 297832.60958128725 309278.5083794336 316928.4279734153 263204.62411221385 316700.04257536004 0.786930614010389 1.048031477417404 1.0492973264944718 1.1444574369675324 1.052270718286874 0.940424911722002 0.976566046106039 1.0007211410399508 0.8310849028369904 1.0 18.272757535750678 2.7338177636979415 24.7352624737359 0.9562801608576287 1.0269304983537204 0.09902856669594973 0.09655224727317667 822.6679042851787 4290417.585937123 0.031142006740680288 0.030271281116422123 541.7735066289622 -2.7338177636979415 0.07065033749609173 DLSHIGDAVVISCAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLSHIGDAVVISCAK 15 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 ;;; 221.8 3.46e-12 6703070000.0 8740670.0 9196710.0 8447660.0 7930320.0 7891050.0 10704450.0 9930710.0 9217510.0 12200480.0 10390260.0 False True 8693611.203899724 9502816.932821412 9637017.099622995 8934297.698885966 8895928.443582289 9964476.567064902 9450323.618303776 9905367.401767379 9193835.18205619 9727144.71125086 0.8937474934288061 0.9769379622603969 0.9907344226591366 0.9184912905173652 0.9145467357232644 1.0243989231022268 0.9715413822694648 1.0183221999679286 0.9451730651670248 1.0 23.21358495033805 2.7404698797894316 24.999868254713043 0.9934124600662312 0.9427520775281341 0.3724346391452097 0.034184782055917906 198.51209250599896 2599327.0957499202 0.010649309555722204 0.010782949859388689 550.1357648803971 -2.7404698797894316 -0.050660382538097126 DLSIEEQSECAQDFYHNVAER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLSIEEQSECAQDFYHNVAER 21 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 0 ; 306.06 1.012e-55 283600000.0 149288.0 198029.0 187225.0 183622.0 179648.0 197191.0 177157.0 178975.0 215633.0 195143.0 False True 148484.24999545605 204620.27555394155 213584.65261112718 206868.52637281208 202525.10794288066 183559.6503076845 168587.23910453965 192331.02331663528 162493.13648416472 182688.80666967246 0.8127714702517974 1.1200482354889116 1.1691173449795358 1.1323546863320424 1.1085797298412217 1.0047668144200352 0.922810993064121 1.0527794604537395 0.8894531605210799 1.0 17.479028717286422 2.588801800254222 4.948185243771202 0.976252738253432 1.0800495239280972 0.18091754880071564 0.10071416693291803 0.3894488400560436 14.432592387330514 0.03336528036280392 0.031174585053285714 387.9732655320884 -2.588801800254222 0.10379678567466522 DLSKY(ph)NFENK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLSKYNFENK 10 1 K7ES28;Q9Y2G9-3;Q9Y2G9 K7ES28 SBNO2 Protein strawberry notch homolog 2 1 DLS(0.002)KY(0.998)NFENK;DLS(0.003)KY(0.997)NFENK;DLSKY(1)NFENK 118.33 0.0029792 1121970000.0 944000.0 1371920.0 1476120.0 1202710.0 1445840.0 1713750.0 1968570.0 1764700.0 1860120.0 1472850.0 True False 938917.6088882594 1417583.5278568477 1683944.8653349539 1354972.9626833668 1629959.1538349162 1595282.4962335713 1873342.748432314 1896390.8749650316 1401718.3503310003 1378851.4520296743 0.6809418139322907 1.028090100474681 1.2212663393552519 0.9826823336834738 1.182113672532027 1.1569647287859106 1.3586255036209642 1.3753409565428802 1.016584018726358 1.0 20.395035608508323 5.128039850777595 1.0684547924406034 1.2025195530918715 1.056447070724203e-20 0.5226621233923452 0.13448449956670824 2.783745891955332 1.4806215960736935 0.04140842854944837 4.619309631628794 134288.81786439064 -5.128039850777595 -1.2025195530918715 DLSLDDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLSLDDFK 8 0 P30048-2;P30048 P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial 0 ; 160.75 0.00081788 178352000.0 634650.0 584260.0 567880.0 477670.0 575400.0 1005540.0 604020.0 529550.0 957080.0 670880.0 False True 631233.1149162439 603706.7409073722 647832.567898554 538142.9730233911 648673.7793370015 936029.3865865528 574801.2450195245 569067.7100004139 721220.4582149499 628063.8640307355 1.0050460646870671 0.9612187159327299 1.0314756269226328 0.8568284275578958 1.0328149993760147 1.4903410945813411 0.9151955365344749 0.906066632059197 1.148323442119981 1.0 19.260551739980276 3.0073421865972145 24.949605464725767 1.0770447991618843 0.9653777520935768 0.12214274869221275 0.1596877731030289 466.35630060456293 1584716.7218991576 0.04941780945386475 0.058950187111024656 1017.0497247276924 -3.0073421865972145 -0.11166704706830755 DLSLEEIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLSLEEIQK 9 0 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949;E5RGX5 STMN1;STMN2 Stathmin;Stathmin-2 0 123.35 0.0013029 269870000.0 216860.0 227260.0 237340.0 229960.0 217570.0 282760.0 248680.0 231030.0 349420.0 301810.0 False True 215692.44985541093 234824.21171842905 270755.4090037385 259072.91242166996 245276.24986157662 263213.4667454442 236650.39835014648 248270.63174656927 263310.1229881174 282548.2274074592 0.763382774808081 0.8310942661827144 0.9582626353315802 0.9169157237290474 0.8680863161384016 0.931570051458392 0.8375575402526803 0.8786840888176635 0.9319121390501636 1.0 18.10813761277258 -3.6828570870247357 0.016333271657286104 2.0127939158437025 1.0246533052846848e-06 0.4144838651438775 0.050640748001867686 4732.985361565333 7.337136450171894 549.2659640267062 370.5195815519968 0.00020755964201205055 3.6828570870247357 -2.012792891190397 DLSLENGAHAYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLSLENGAHAYNR 13 0 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 126.09 0.00019263 298030000.0 194530.0 212120.0 167870.0 201790.0 166470.0 220550.0 204000.0 187980.0 278320.0 228650.0 False True 193482.67209431503 219180.28597075204 191504.6368478031 227336.59331000492 187668.96775500634 205303.89761885573 194131.74064432143 202008.0221430988 209731.76529692917 214057.3612428865 0.9038823564435806 1.023932485657677 0.8946416779869893 1.062035858005606 0.8767227936724036 0.9591069254838736 0.9069145742857407 0.9437097653179254 0.9797923513546019 1.0 17.707637923828212 1.0756547805438417 3.907808303264805 0.9992953134506292 0.9471386894107324 0.09541144958544157 0.0552030398085321 0.45519764977087623 13.027967666885385 0.04764142526963546 0.01227494044614526 11.902954693724567 -1.0756547805438417 -0.05215662403989674 DLSLEVDRDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLSLEVDRDR 10 1 E7EMW7;O95071-2;O95071;E5RFK7 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 0 ; 146.71 2.5698e-05 854690000.0 448090.0 543730.0 516280.0 552420.0 543770.0 570950.0 522650.0 471220.0 645610.0 591800.0 False True 445677.53322747943 561827.7243582744 588967.7364137952 622356.3153591012 613015.8863226995 531481.5703717335 497367.4227831107 506384.8292066764 486508.06623077905 554030.8173345296 0.8044273337928325 1.0140730565517204 1.0630595230195836 1.1233243637119124 1.1064653213190379 0.959299652190321 0.8977251936561411 0.9140011951734374 0.8781245573511489 1.0 19.07960670121517 2.5032821250353576 7.7557919635641115 0.9160913377082374 1.0301571007709285 0.2251238885615554 0.08696299011415996 0.30797028830643464 76.8107366913501 0.029800122897144708 0.027273493965789368 318.62667022662015 -2.5032821250353576 0.11406576306269112 DLSLLSHGGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DLSLLSHGGR 10 0 A6NP24;Q08257;Q08257-2 A6NP24 CRYZ Quinone oxidoreductase 0 ;; 136.96 0.00010389 729880000.0 429799.0 542500.0 542480.0 558060.0 556350.0 612500.0 541950.0 454131.0 575040.0 562730.0 False True 427485.0099391583 560556.784551825 618856.4686793127 628710.3387808192 627197.874755198 570159.3166699124 515733.80804995104 488020.56125049235 433329.09714122635 526816.089622608 0.8114501784586592 1.0640464397231824 1.1747106454600487 1.1934152186414893 1.1905442660350405 1.0822739242424313 0.9789636615301633 0.9263584975168329 0.8225433992565557 1.0 19.006939882415967 2.0765403235868067 2.459941098563078 0.91017374635632 1.0998257820144168 0.32331083558539475 0.11099163371919368 0.33860343671257126 3.9855392751439513 0.05762226606507417 0.03442617554742993 119.27250034302409 -2.0765403235868067 0.18965203565809685 DLSSHQLNEFLAQTLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLSSHQLNEFLAQTLQR 17 0 P09960-4;P09960;P09960-3;P09960-2 P09960-4 LTA4H Leukotriene A-4 hydrolase 0 212.76 1.2769e-12 1028300000.0 855240.0 1021900.0 987850.0 867460.0 849050.0 992160.0 995280.0 1028100.0 1205700.0 1009800.0 False True 850635.4828660974 1055913.323748404 1126930.6934538763 977280.3470573236 957171.4847863765 923574.3144934207 947134.5040611776 1104822.0425860186 908571.3905522673 945353.6994667242 0.8998065838700822 1.1169505385593208 1.1920730770817103 1.0337721718427815 1.0125009140243686 0.9769616546848134 1.0018837442488013 1.1686864326116784 0.9610914846631416 1.0 19.850494682072352 4.751939432124066 24.288869146809244 1.059753221458142 0.899806427647975 0.25406366740638975 0.07685195302341007 2111.384455269525 3833060.1783307204 0.018993626457049915 0.35641474882302054 56485.819267682156 -4.751939432124066 -0.15994679381016697 DLSSS(ph)PPGPYGQEMYAFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLSSSPPGPYGQEMYAFR 18 0 O43741;O43741-2 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 DLS(0.001)S(0.012)S(0.987)PPGPYGQEMYAFR;DLSS(0.028)S(0.972)PPGPYGQEMYAFR;DLS(0.006)S(0.151)S(0.844)PPGPYGQEMYAFR;DLSS(0.003)S(0.997)PPGPYGQEMYAFR 211.06 6.6391999999999995e-16 564580000.0 386298.0 404119.0 365075.0 382555.0 361667.0 411362.0 399042.0 377885.0 473264.0 444644.0 True False 384218.2144897424 417569.8566199055 416474.3867112153 430986.42377575213 407723.14868174354 382925.5131819894 379738.813971526 406084.69756114896 356634.4286126966 416266.4392411196 0.9230103084702116 1.0031312093791709 1.0004995537725183 1.0353619296368644 0.97947638878851 0.919904842389137 0.9122494108912892 0.9755403253297753 0.8567455720496324 1.0 18.66714772282088 2.855547560477078 5.016616349279704 0.9335684428681331 0.9936805518533495 0.28126706405188173 0.04430799819135981 0.28517351808442454 10.627717289107522 0.013210424584309226 0.014074202692768874 717.0468965532319 -2.855547560477078 0.06011210898521635 DLSTIEPLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLSTIEPLKK 10 1 P39687;H0YN26;O95626 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D 0 121.9 0.0050008000000000006 0.0 446840.0 426290.0 364480.0 355260.0 386210.0 589690.0 526290.0 544110.0 758840.0 596560.0 False True 444434.2630885906 440478.8049522537 415795.61588304775 400235.8795743715 435391.55425398506 548926.1182809483 500831.3420769601 584714.2511345963 571834.0499350447 558487.0300592878 0.7957826040139382 0.788700151023191 0.7445036205028929 0.716643105448453 0.7795911647362067 0.982880691468655 0.8967644996586455 1.0469611999271036 1.0238985314920206 1.0 19.091164251320123 2.746846740611035 4.007581005503475 0.9919115467341523 0.7600393757466527 0.8790931694312327 0.04177584441256968 0.07468004669657537 2.838776872199796 0.014426305971580452 0.014530844008871793 558.2731494047927 -2.746846740611035 -0.23187217098749957 DLSYCLSGMYDHR ddPTM_BT-474_Trastuzumab_2h_R1 10 DLSYCLSGMYDHR 13 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ;;;;;;;;; 234.82 1.1374e-16 20100810000.0 6692260.0 8331030.0 8149050.0 8078070.0 6966560.0 7508340.0 8094630.0 6619160.0 10068740.0 7776230.0 False True 6656229.615739985 8608323.29733602 9296365.407187631 9100752.83373682 7853710.121963809 6989306.128531213 7703061.822410508 7113115.330613429 7587433.941203653 7279944.3438345445 0.9143242449892094 1.1824710314751914 1.2769830328525538 1.2501129684383283 1.0788145830558709 0.9600768630120812 1.058120977110808 0.977083751558842 1.0422379049682604 1.0 22.79549599019034 3.0124944662509514 7.468002543701849 1.0088938256240427 1.1666314156422462 0.35015246201622363 0.09490858791741577 0.1578089159878057 49.70486459339687 0.028432826749310934 0.03325197625947375 1029.1874132788919 -3.0124944662509514 0.15773759001820342 DLTDYLMK ddPTM_BT-474_Trastuzumab_2h_R1 8 DLTDYLMK 8 0 P60709;A0A2R8Y793;P63267-2;A0A2R8YEA7;Q562R1;P63261;I3L3I0;I3L1U9;I3L4N8;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle 0 ;;;;;;; 204.65 0.00019968 29666187000.0 12660480.0 12921230.0 12233640.0 10749780.0 10069560.0 13555110.0 14229020.0 12249030.0 18591470.0 13326300.0 False True 12592317.382391576 13351305.329501519 13956030.175294898 12110701.045800235 11351858.779041875 12618077.15099674 13540707.942465024 13163114.81791403 14009851.331434673 12475804.12478055 1.009339138098489 1.0701759338287438 1.118647746927526 0.9707351065046689 0.9099099878054197 1.0114039163161912 1.0853575294252389 1.0550914944046197 1.122961789982504 1.0 23.572629471312762 -0.6246790015371423 7.970583938914049 1.0000000072514226 1.0390973792058935 0.03377527486950671 0.06303844335219055 0.0 0.0 0.0647262715405887 0.01525612850909071 0.237312709818584 0.6246790015371423 0.03909737195447094 DLTEYLSR ddPTM_BT-474_Trastuzumab_2h_R1 8 DLTEYLSR 8 0 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 ;;;;;;; 259.3 8.729299999999999e-13 8113690000.0 3656950.0 4429020.0 4350230.0 4098260.0 3694220.0 4054780.0 4323280.0 3780370.0 5050380.0 4116380.0 False True 3637261.3875253377 4576437.253300868 4962704.571122997 4617099.295795931 4164657.0196425687 3774482.602525434 4114146.4298665775 4062480.4057298983 3805781.5206248346 3853669.104189779 0.943843721187904 1.1875532458988973 1.2877868952805145 1.1981047596370265 1.0806991744866412 0.9794516603466935 1.0675920320698014 1.0541850625714324 0.9875735092271206 1.0 21.877801269074286 3.052768263946723 4.779597430133287 1.0278863232157214 1.1652516724219897 0.356666258480538 0.08529495434539791 0.22766377168342225 11.099775676028004 0.025931947465610443 0.030883071926911226 1129.1932254410458 -3.052768263946723 0.1373653492062683 DLTPEHLPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLTPEHLPLLR 11 0 Q96C86;A0A3B3ITF0 Q96C86 DCPS m7GpppX diphosphatase 0 ; 192.3 1.4532e-06 376970000.0 635160.0 794680.0 668830.0 717390.0 725260.0 703180.0 705360.0 666340.0 832790.0 739400.0 False True 631740.36913291 821130.4434057947 762995.4504254245 808211.5004443466 817617.5620471914 654570.8217076717 671239.0420631308 716065.67440596 627560.0633142764 692210.8589678123 0.9126415180410885 1.1862432274324912 1.1022587128482244 1.1675799216000573 1.18116835564582 0.9456234516224329 0.969703137948524 1.0344617758145527 0.9066024538390807 1.0 19.400852048208492 2.7305225932923913 24.966610673063652 0.9783267522975464 1.1169865045005893 0.42899143848136123 0.07959799281726097 569.262736835643 1768161.547283742 0.024798286070120676 0.0237580555809897 537.6784040266076 -2.7305225932923913 0.13865975220304294 DLTQMADELRR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLTQMADELRR 11 1 P41227-2;P41227;C9JN83 P41227-2 NAA10 N-alpha-acetyltransferase 10 0 ;;;;; 248.21 5.3706e-16 2967327000.0 1248410.0 1567130.0 1497229.0 1618402.0 1476269.0 1529561.0 1604326.0 1439205.0 1838679.0 1641360.0 False True 1241688.6992713895 1619290.9746999117 1708025.8290522385 1823291.5272615047 1664263.1066181026 1423826.0482693014 1526718.62225952 1546605.7852349079 1385561.1974863168 1536606.9995610074 0.8080717448418021 1.0538094484552825 1.1115567152435226 1.18656984367662 1.0830766143155441 0.9266039063183193 0.9935647974372677 1.0065070546188823 0.9017017349798336 1.0 20.551316799881032 2.747518546613056 24.851949783417037 0.9717637389817805 1.0600660637036088 0.15074651900897407 0.09599584891730924 1178.1616025431736 3268568.3909554044 0.030648865564911695 0.03208737831829838 559.1374051101203 -2.747518546613056 0.08830232472182831 DLTTAGAVTQCYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLTTAGAVTQCYR 13 0 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 0 ; 234.65 2.6727e-16 494490000.0 193171.0 196398.0 206746.0 176164.0 169435.0 185429.0 212343.0 180995.0 270850.0 198293.0 False True 192130.98879931585 202934.9887049017 235854.03973155344 198466.34433749836 191011.54293007456 172610.72968291474 202071.15786096628 194501.76597398738 204102.6467040572 185637.77097282163 1.0349778915813683 1.0931772539684959 1.2705067427580983 1.0691054050985933 1.0289476216455955 0.9298254809803005 1.0885239399397366 1.0477488765067293 1.0994672346822076 1.0 17.50213075414351 3.4894825309816944 24.553124973633043 1.0359823229146023 1.1357312563206803 0.28805674852485696 0.07047652968606602 597.3215474569121 1186455.251584594 0.01938902774165298 0.028386216802454525 3086.615487470588 -3.4894825309816944 0.09974893340607793 DLTVLCHLEQLLLVTHLDLSHNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLTVLCHLEQLLLVTHLDLSHNR 23 0 Q92696;H0YKZ8;H0YMG5;H0YLG7 Q92696 RABGGTA Geranylgeranyl transferase type-2 subunit alpha 0 ; 267.55 9.7211e-45 302130000.0 112278.0 123742.0 129944.0 118521.0 127175.0 144942.0 125017.0 77876.0 170146.0 125526.0 False True 111673.50772325843 127860.67766638138 148238.98570650438 133525.7464477682 143369.9824247186 134922.50069676823 118969.45009868212 83687.5025663154 128215.79813959225 117514.82321178463 0.9502929474863012 1.0880387186214926 1.2614492508689632 1.1362459883646232 1.220016152058859 1.1481317591195415 1.0123782417157363 0.7121442238439503 1.0910606392907758 1.0 16.842483222931847 2.030873441896821 5.240975476685006 0.8926313371069226 1.1390028888613963 0.34734089579760585 0.11993220687961756 0.15819580859178153 11.49671304831044 0.04754919442225793 0.033359134627360114 107.36764858227922 -2.030873441896821 0.24637155175447378 DLVASVPDMQGDGEDNHMDGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLVASVPDMQGDGEDNHMDGDK 22 0 E9PQX9;C9JCC6;Q14919;Q14919-2;E9PMW2 E9PQX9 DRAP1 Dr1-associated corepressor 0 ;;; 303.23 5.8907e-56 1361820000.0 1379580.0 1135559.0 1078273.0 1002995.0 991705.0 1361360.0 1346700.0 1205140.0 1831240.0 1363360.0 False True 1372152.4945657486 1173355.3948550879 1230084.4658830713 1129974.0641606068 1117992.7534539457 1267252.3874967366 1281554.9761064104 1295073.6663769241 1379955.4393588249 1276349.197568779 1.0750604122911331 0.9193059368784997 0.9637522930450115 0.8853173303301392 0.8759301573452825 0.9928727889754855 1.0040786475578527 1.0146703338269902 1.0811738997348042 1.0 20.283591660714492 2.507472053471742 5.917516585756518 1.0215433627827275 0.9395627976091148 0.32203856935900554 0.05544773438993994 0.22297361045643876 24.279313261162596 0.018664003002770786 0.016986653179091996 321.7155504460631 -2.507472053471742 -0.08198056517361274 DLVDDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVDDFR 7 0 Q6NUQ1 Q6NUQ1 RINT1 RAD50-interacting protein 1 0 ; 102.72 0.019862 216603000.0 932110.0 1031090.0 929500.0 954050.0 945350.0 1094440.0 1071930.0 966480.0 1220280.0 1067890.0 False True 927091.6233271568 1065409.2073429325 1060365.5206411663 1074832.63217905 1065734.7189715586 1018783.9388346436 1020076.650729743 1038603.6452859977 919558.3449142576 999736.3459333736 0.9273361192661309 1.0656901808928887 1.0606451640519161 1.0751160909085136 1.0660157783666129 1.0190526162010114 1.0203456690147434 1.0388775495766704 0.9198008541499407 1.0 19.93118814675756 1.257731301249186 24.761572409240145 0.9599004453161389 1.037331022451431 0.3089622658374418 0.04420197448742152 204.2921923627239 263873.2008022638 0.028567446660832135 0.010393691811748424 18.10219759967571 -1.257731301249186 0.077430577135292 DLVDEDLSHFQSGS(ph)PPAPNGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVDEDLSHFQSGSPPAPNGFK 22 0 Q70EK8 Q70EK8 USP53 Inactive ubiquitin carboxyl-terminal hydrolase 53 1 DLVDEDLSHFQS(0.001)GS(0.999)PPAPNGFK;DLVDEDLSHFQS(0.001)GS(0.999)PPAPNGFK 342.48 1.1421999999999995e-81 668540000.0 532550.0 430960.0 399820.0 342230.0 356820.0 569600.0 583070.0 457950.0 611450.0 564830.0 True False 529682.809971868 445304.2430791791 456111.1807022613 385556.2829103676 402258.9119621635 530224.8926941755 554864.676556297 492124.55442298186 460766.34051022964 528782.0658247086 1.0017034317261773 0.8421318948944793 0.8625693081910655 0.729140240997091 0.7607272219695751 1.0027285851066388 1.0493258232782707 0.930675577386396 0.8713728590465734 1.0 19.01231372165966 2.727580531037452 24.88929774356883 0.9701659047367743 0.8345920953797316 0.3995068476659991 0.08054696721089674 737.0074463059592 1670621.5297313072 0.02738550308089608 0.02604801489327111 534.0482927366902 -2.727580531037452 -0.13557380935704277 DLVDSPASLASSLGS(ph)PLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVDSPASLASSLGSPLPR 19 0 K7EMK7;Q04725;Q04725-2;Q04725-3 K7EMK7 TLE2 Transducin-like enhancer protein 2 1 DLVDSPASLASS(0.002)LGS(0.998)PLPR;DLVDSPASLAS(0.002)S(0.015)LGS(0.982)PLPR 169.43 1.4839000000000002e-11 103287000.0 51957.0 50865.0 47662.0 47752.0 44723.0 54840.0 52827.0 45181.0 63260.0 50878.0 True False 51677.269284965405 52558.0107764582 54372.39531446945 53797.398303877126 50418.20895601097 51049.03987947429 50271.5561912626 48552.6356444693 47670.42064057102 47630.922481152746 1.0849520981965817 1.1034430583882786 1.141535634460665 1.1294637076400194 1.0585184231097169 1.0717625697817226 1.055439482851812 1.0193511507924558 1.0008292545548305 1.0 15.539610869592908 2.2059867148987284 0.7989511679527291 0.9969801799087995 1.1142089284376004 0.8280357132304477 0.019657890622606203 0.26251550598645007 0.3186377106877621 0.01705815280264724 0.01003590407378296 160.68920973094265 -2.2059867148987284 0.11722874852880094 DLVEAVAHILGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVEAVAHILGIR 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 157.24 0.00011067 2658200000.0 598050.0 800420.0 652900.0 645840.0 609120.0 703950.0 766920.0 572870.0 842210.0 736160.0 False True 594830.1652496014 827061.495835893 744822.6448914673 727603.2777805324 686687.8214629032 655287.5934200564 729821.1496810935 615620.4683749167 634658.6305358097 689177.6385417156 0.8631013718150354 1.2000701264567095 1.0807411663377462 1.0557557835453346 0.9963872636899815 0.9508253848842662 1.0589739261206714 0.8932681995857494 0.9208926625633604 1.0 19.39451636623713 3.1121405912070665 2.542703735776686 0.9605551202435412 1.0644036682556475 0.16564558337783764 0.0875730460707873 0.42150253750374744 5.540476768401079 0.026510300822847402 0.0329717045654969 1294.6148705130404 -3.1121405912070665 0.1038485480121063 DLVEMCR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLVEMCR 7 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;; 148.33 0.0048655 1580380000.0 1567590.0 2101650.0 1927630.0 2177640.0 2115050.0 1853770.0 1788990.0 1736450.0 1926190.0 1911200.0 False True 1559150.2696156201 2171602.1497757495 2199023.5487396796 2453329.0007215436 2384389.0806164863 1725623.243205198 1702449.719094534 1866032.7165144377 1451506.2841236403 1789225.5797393604 0.8714106746913065 1.213710654691227 1.229036502518601 1.3711680788058733 1.3326374871992521 0.9644525892909337 0.9515008830482586 1.0429275870213448 0.8112483414948067 1.0 20.77090385847758 2.7196179985187516 23.5072092457307 0.9636087479090543 1.2148780690533543 0.4520116435266377 0.13690958494403316 362.36918922857666 449687.8840146118 0.04550256550173197 0.0429811671549223 524.3460473320246 -2.7196179985187516 0.2512693211443 DLVHSNKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVHSNKK 8 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ; 144.09 0.00038365 3042700000.0 3981600.0 3497700.0 3520000.0 3256500.0 3241070.0 3880900.0 4118900.0 3848100.0 5979200.0 4327800.0 False True 3960163.5079973494 3614118.830095699 4015585.403611523 3668772.5661035324 3653801.0531730535 3612622.5176559426 3919653.071273996 4135264.7622558647 4505706.2771751825 4051596.0987840034 0.9774329452992376 0.8920234746944289 0.9911119730855481 0.9055129081609672 0.9018176945795907 0.8916541603789655 0.9674343087778154 1.0206507908073494 1.1120817987082845 1.0 21.95005892921713 1.7394118280749813 2.5557816715499535 1.0571715605399423 0.9265122290202455 0.6154989087359091 0.04160735922600042 0.1528223490147363 2.0765810836949568 0.024646925935497485 0.01101420433855139 54.8797125659484 -1.7394118280749813 -0.13065933151969678 DLVHTEGQLQNEEIVAHDGSATYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVHTEGQLQNEEIVAHDGSATYLR 25 0 Q9Y547 Q9Y547 HSPB11 Intraflagellar transport protein 25 homolog 0 ; 370.81 5.194199999999999e-120 523860000.0 65653.0 91870.0 62812.0 60082.0 70262.0 78044.0 70714.0 60308.0 94512.0 76525.0 False True 65299.53154273405 94927.83741341226 71655.3836283087 67688.37503965378 79209.44922449838 72649.00197581497 67293.29366628705 64808.4891978189 71220.78399591599 71641.10898365137 0.9114813054839159 1.3250470122548628 1.0001992521453094 0.944825896750152 1.1056424216237932 1.0140686402885473 0.9393111667442711 0.9046271074978517 0.994132907855582 1.0 16.12850004954824 3.0578211518240415 0.7732953985819665 0.9474382752239187 1.096467546816436 0.11757593527664256 0.11065721155805198 1.1192150022357807 1.4916137992757368 0.06395771206978104 0.08993961420011244 1142.4077793667636 -3.0578211518240415 0.14902927159251733 DLVIERPRPDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLVIERPRPDSR 12 2 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 ;;; 198.55 1.0239e-07 1259560000.0 473523.0 555420.0 510479.0 450815.0 476369.0 520570.0 528060.0 464399.0 540520.0 516790.0 False True 470973.604781351 573906.8189415191 582350.0060369906 507888.1327768967 537031.7684897255 484584.2211899694 502515.7204149044 499054.81155034 407316.08859692485 483808.0197538208 0.9734720913080349 1.1862284119092195 1.203679935552353 1.0497720418841523 1.1100100588720851 1.0016043583497098 1.038667611732858 1.0315141361325042 0.841896107477057 1.0 18.88407515851937 2.2438626378742303 0.823144849472963 0.9490734334396638 1.119051037019826 0.3930259819229762 0.07785169884491083 0.6422990123894271 0.8314303450695415 0.061015465365822134 0.03643452528773331 175.33258582333445 -2.2438626378742303 0.16997760358016212 DLVILLYETALLSSGFSLEDPQTHANR ddPTM_BT-474_Trastuzumab_2h_R1 8 DLVILLYETALLSSGFSLEDPQTHANR 27 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;;; 273.45 8.171399999999996e-61 47067870000.0 15884801.0 17962844.0 16036504.0 16319317.0 15356566.0 17784813.0 17363452.0 16091846.0 21293069.0 18350040.0 False True 15799278.996383304 18560726.403771516 18294304.37140845 18385340.858942714 17312133.654602204 16555390.738256622 16523515.49193198 17292701.261258278 16045677.457456563 17178924.73694036 0.9196896335665081 1.0804358647581607 1.064927208864805 1.070226521186635 1.00775420579004 0.9637035490735381 0.9618480635403778 1.0066230294421896 0.9340327001347795 1.0 24.034136402362446 2.9917216915930025 5.380402876470187 0.9761040231384354 1.0395981095165405 0.2737408179011962 0.0461194614888895 0.21645766813506515 20.423530631394577 0.013563886868156681 0.015360313377516274 981.1190122143586 -2.9917216915930025 0.06349408637810516 DLVLPTQALPAS(ph)PALK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLVLPTQALPASPALK 16 0 Q15554;J3KSZ6;U3KQ35;H3BR06 Q15554 TERF2 Telomeric repeat-binding factor 2 1 DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK 299.23 8.4203e-46 3337680000.0 3829690.0 3262460.0 3082100.0 2875830.0 2605690.0 4188550.0 4106180.0 3620730.0 5860810.0 4294810.0 True False 3809071.3745585554 3371049.0089012845 3516032.8899065563 3239909.78313451 2937509.1763653615 3899005.3972861446 3907548.3862691224 3890927.2582944008 4416491.906330465 4020711.5488281692 0.9473625074319753 0.8384210028405972 0.8744802623135945 0.8058050779789903 0.7305943589068195 0.9697301957466967 0.9718549412996245 0.9677210640560391 1.098435401967009 1.0 21.939019408321872 2.5685437499814663 7.113608595391773 0.9977494991924104 0.8395227982838303 0.6387020823679368 0.06131830913333895 0.18088139259409042 12.198639751067548 0.02041809951060993 0.01918607527227983 370.2915059674573 -2.5685437499814663 -0.15822670090858015 DLVMGS(ph)SPQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVMGSSPQLK 11 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 DLVMGS(0.616)S(0.384)PQLK;DLVMGS(0.877)S(0.123)PQLK 151.99 3.4778000000000005e-05 475660000.0 2127570.0 1817200.0 1723630.0 1469810.0 1538870.0 2181900.0 1996440.0 1985670.0 2583300.0 1965500.0 True False 2116115.3995152507 1877684.4034794036 1966302.1219394684 1655887.7952969864 1734835.972902904 2031070.3886401318 1899864.5700585728 2133850.778427955 1946680.3294465246 1840060.107250789 1.1500251492745597 1.0204473191285195 1.068607549389947 0.8999096218498144 0.9428148385298679 1.1038065444909455 1.0325013637174805 1.1596636273018903 1.0579438800806544 1.0 20.811321463332703 2.7075746451348053 24.84189185183246 1.0838698585695652 1.0130209729443418 0.10368199288747104 0.07491691796564155 1160.7940629958246 930623.8545576348 0.024918211760040956 0.02349505773323398 510.00524809921626 -2.7075746451348053 -0.0708488856252234 DLVMGSS(ph)PQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLVMGSSPQLK 11 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 DLVMGS(0.196)S(0.804)PQLK 147.26 3.7116e-05 616680000.0 678140.0 571980.0 524660.0 450080.0 491180.0 714090.0 668930.0 652910.0 788170.0 634740.0 True False 674488.9695884363 591018.0085307886 598527.5675735284 507060.08185225766 553728.861548051 664726.6390870493 636571.3003392451 701633.4596098027 593936.0644369086 594230.3497717461 1.1350631448688524 0.9945941144840693 1.0072315690429359 0.8533055944500781 0.9318421076283762 1.1186346159235758 1.0712534298925709 1.180743225046166 0.9995047621937342 1.0 19.180662765821886 2.7319266849698485 24.698342092058784 1.0927303533780095 0.9789578254980109 0.20714929795094794 0.08342040060813438 581.4504308640597 2164751.8005934246 0.027414868979133172 0.026414731735318144 539.4195532044725 -2.7319266849698485 -0.11377252787999859 DLVMGSS(ph)PQLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVMGSSPQLKR 12 1 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 DLVMGS(0.03)S(0.97)PQLKR;DLVMGS(0.087)S(0.913)PQLKR 136.6 6.5541e-05 1551080000.0 171620.0 204007.0 193921.0 174128.0 200156.0 243656.0 222782.0 221776.0 340700.0 249570.0 True False 170696.01698877473 210797.2496701645 221223.39120845142 196172.58694625398 225644.6801824417 226812.63422452917 212005.18355011393 238326.05127570944 256739.05014610424 233642.22893237305 0.7305871792473874 0.902222387765266 0.946846776027307 0.8396281264849407 0.9657701059158864 0.9707690055044772 0.9073924029866969 1.0200469853619318 1.0988555079245392 1.0 17.833941527615675 6.94878780084527 0.26245553400509364 1.0351389744462822 3.87303310444886e-17 0.6398118401137781 0.057966251035377635 19.66668588577343 0.44344917571935893 0.07171048687812602 8.173883355519614 8887667.54438825 -6.94878780084527 -1.0351389744462822 DLVPNHLSYYLYNHVAMWPEQSDKWPTAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLVPNHLSYYLYNHVAMWPEQSDKWPTAVR 30 1 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PRP1 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 101.66 0.00026426 236280000.0 28870.0 46020.0 50557.0 52809.0 71242.0 62037.0 63929.0 46735.0 52210.0 68082.0 False True 28714.567127758535 47551.74788032251 57674.98615067835 59494.61398537124 80314.24641558327 57748.528209389995 60836.51003750404 50222.60301552139 39343.54507815701 63736.94847206723 0.4505168166364713 0.7460625119378299 0.9048909232916047 0.9334399498502003 1.2600892942149726 0.9060447604374774 0.9544936100002606 0.7879668578349257 0.6172800239314775 1.0 15.959842328542823 4.653148359159283 1.9962299240130974 0.9210838427436817 0.36105688589835744 0.4735901533212368 0.15266312291162284 0.5685574419362344 2.8173707618299493 0.0418381536816331 0.5455285089018681 44993.353025146 -4.653148359159283 -0.5600269568453242 DLVQPDKPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 DLVQPDKPASPK 12 1 Q6PJT7-5;Q6PJT7;G3V411;G3V4R5;Q6PJT7-9;Q6PJT7-2;H0YJA2 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK 192.46 1.0682e-05 11294390000.0 13988820.0 8360150.0 7275850.0 7092320.0 6832560.0 12057770.0 11726800.0 10844380.0 20601120.0 10330220.0 True False 13913505.747424003 8638412.538932597 8300226.437178086 7990206.984808048 7702646.0162440445 11224244.740837513 11159529.883273683 11653642.702245852 15524250.016865006 9670936.51545371 1.4386926979813035 0.8932343341442489 0.8582650112442273 0.8262081931817117 0.7964736407829348 1.160616112297055 1.1539244276333809 1.2050169788234955 1.6052478466855793 1.0 23.205224173688066 2.3201498035795693 1.9257881502727392 1.2714808693865092 0.9492447923858504 0.251920467856258 0.22312291161908307 0.4390624137349493 3.320148005487267 0.10315740106607206 0.07225971761193402 209.00169275440385 -2.3201498035795693 -0.3222360770006588 DLVSSLTSGLLTIGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVSSLTSGLLTIGDR 16 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 168.61 1.3762e-08 175081000.0 62813.0 71569.0 77574.0 75337.0 64053.0 66367.0 82585.0 71825.0 82771.0 74110.0 False True 62474.821787180386 73951.13090062598 88495.74491470463 84874.65647552337 72209.76987812473 61779.20550111364 78590.04804466314 77184.94621995986 62373.19612457638 69380.23635123686 0.9004700051885399 1.0658817955916007 1.275518066365408 1.2233261363631875 1.0407829905992736 0.8904438605304965 1.1327440230500467 1.1124918316681962 0.8990052413314449 1.0 16.082237134877932 3.030230918419225 24.793925765506916 1.0257813390580455 1.1250686320824068 0.14969474907377178 0.11842719663682809 403.5303460958398 330952.94552179077 0.0365150716922317 0.043643463819966415 1072.0891935218644 -3.030230918419225 0.09928729302436134 DLVVLLFETALLSSGFSLEDPQTHSNR ddPTM_BT-474_Trastuzumab_2h_R1 9 DLVVLLFETALLSSGFSLEDPQTHSNR 27 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;;; 229.99 6.4685e-35 31395550000.0 7786921.7 8670369.4 8204295.8 7665541.1 7357803.3 8408287.9 9224594.8 8273532.800000001 9554869.1 9018816.7 False True 7744997.778775536 8958957.404130023 9359389.335622527 8635997.817294363 8294775.937138093 7827042.748453708 8778365.908149779 8890945.829684298 7200199.638991368 8443228.09680856 0.9173029189751551 1.0610820057693813 1.1085084079583571 1.0228312818599166 0.9824176063978918 0.9270201703317997 1.0396930898346683 1.0530268432573757 0.8527780555535338 1.0 23.00936325887969 3.3284104471426144 4.996062493609264 0.9857058482678771 1.0370233938144746 0.10263142082874799 0.06989291351869087 0.5160562900911799 21.71760508967277 0.020067932143738563 0.02723986631931559 2130.1512785102323 -3.3284104471426144 0.05131754554659751 DLVWLEEIQEEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLVWLEEIQEEAER 14 0 Q9NQS7-2;Q9NQS7;E9PM67 Q9NQS7-2 INCENP Inner centromere protein 0 ; 114.82 0.0010597999999999998 24178000.0 18180.9 20541.6 17740.1 18574.2 20692.0 26343.0 23294.0 20563.0 32259.0 27981.0 False True 18083.01605448789 21225.314738340585 20237.75188028658 20925.69181554436 23327.00354890724 24521.970414751857 22167.180228278547 22097.515476798275 24309.20169845369 26195.228624260682 0.6903171685907838 0.8102740786420464 0.7725739740840976 0.798836006194046 0.8905058201058402 0.9361235500743391 0.8462296911487323 0.8435702468476525 0.9280011275007445 1.0 14.6770164330299 7.999999999999999 0.13969798239492642 1.0066344940778902 0.0201309009389888 0.756804247213862 0.042238424544890754 42.47145738738814 0.3951559784098023 0.19605014081683395 8.371909819785367 99999999.99999979 -7.999999999999999 -0.9865035931389013 DLWYLETEKPPPPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLWYLETEKPPPPAR 15 1 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 141.34 4.3597e-06 248930000.0 190760.0 182730.0 152160.0 165850.0 157820.0 177920.0 193440.0 180130.0 209860.0 210060.0 False True 189732.96935542853 188812.0575873826 173582.80540157098 186846.59299501637 177917.44152757296 165620.80917863 184082.56818743912 193572.2152816066 158142.8149799277 196653.79095858627 0.9648070776087139 0.9601241688096667 0.8826822231874805 0.9501296267121786 0.9047241889429987 0.8421948459336258 0.9360743430885878 0.9843299452201832 0.8041686570549322 1.0 17.585298472283547 4.34299694400389 8.961153292827232 0.9158629218856966 0.963428524564936 0.10599848947864987 0.05699291288072281 0.6142801475958833 47.78088748436401 0.013471589128216487 0.03703942315585113 22029.10961794985 -4.34299694400389 0.04756560267923937 DLYANTVLSGGT(ph)TMYPGIADR ddPTM_BT-474_Trastuzumab_2h_R1 1 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 1 DLYANTVLS(0.397)GGT(0.584)T(0.019)MYPGIADR 108.17 0.00080184 0.0 15901.0 21728.0 20002.0 18783.0 19740.0 24911.0 21298.0 20289.0 23972.0 20713.0 True False 15815.39078276718 22451.203345146645 22818.10773949935 21160.92587413563 22253.771991853315 23188.961204186435 20267.734373739022 21803.068205454463 18064.42180834284 19391.07860670852 0.8156013960613672 1.1578109604165827 1.1767322593187373 1.0912712130832587 1.1476294043877693 1.1958572122008726 1.0452092317715227 1.1243865618651812 0.9315841668597685 1.0 14.243105433498048 1.2417529393523146 24.99927424366239 0.9657920546743138 1.1027246782715947 0.1933558238845774 0.10387026909006966 112.71345894659063 882723.5678464015 0.07289017281654134 0.024081342807834815 17.448292752587236 -1.2417529393523146 0.13693262359728087 DLYANTVLSGGTTMYPGIADR ddPTM_BT-474_Trastuzumab_2h_R1 9 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;;;;; 331.27 9.845399999999997e-80 4872710000.0 1733601.0 1916799.0 1733288.0 1721396.0 1840095.0 1890746.0 1945533.0 1715255.0 2114752.0 1936415.0 False True 1724267.4848371763 1980598.4959855375 1977319.8843906254 1939324.557101294 2074420.1911524502 1760043.179357339 1851420.1361322012 1843256.0379884082 1593599.7058249917 1812831.3368517098 0.9511461159048918 1.0925442735479098 1.0907357150084231 1.0697766072762518 1.1442985064209195 0.9708808224895061 1.0212864807089597 1.016782973969071 0.879066724758051 1.0 20.789813274435602 1.9842324538490133 1.159438178917158 0.9564444606975185 1.066822953672 0.3218286935950365 0.06134383376366874 0.5639266769533455 1.399302808760499 0.04598371056233638 0.02113414927833311 96.43450461525349 -1.9842324538490133 0.11037849297448143 DLYCHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DLYCHK 6 0 P16220-1;P16220;P16220-3;Q03060-6;G5E998;Q03060-26;Q03060-32;Q03060-21;Q03060-31;E9PAR2;Q03060-23;Q03060-9;Q03060-24;Q03060-8 P16220-1;Q03060-6 CREB1;CREM Cyclic AMP-responsive element-binding protein 1;cAMP-responsive element modulator 0 ; 103.71 0.034451 171906000.0 277932.0 298182.0 274526.0 263682.0 197452.0 258075.0 291160.0 259291.0 380448.0 288124.0 False True 276435.6449931478 308106.8076151744 313176.8745772319 297064.1141640751 222596.3418103051 240234.8826932043 277075.4784607878 278640.61107301974 286691.68814201624 269735.6796446332 1.0248390029726195 1.1422545509036615 1.1610509777194877 1.1013156085077291 0.8252387748760845 0.8906307204508683 1.027211078733909 1.0330135465953871 1.0628615707040387 1.0 18.041186843032097 3.4397782042181424 24.999734649769987 0.9773916934111697 1.115754749926841 0.4386395354223467 0.07422239214370215 163.89197520955406 109718.92035097616 0.022449223919349056 0.030396475008525353 2752.8224677715466 -3.4397782042181424 0.13836305651567127 DLYDAGVKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLYDAGVKR 9 1 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YL33;H0YNP5;H0YN28 P07355-2 ANXA2 Annexin A2;Annexin 0 ;;; 140.88 0.00017324 3888190000.0 3442330.0 4309690.0 4330600.0 3613460.0 3861940.0 6231500.0 4889780.0 4815750.0 8224800.0 5348840.0 False True 3423796.8777588145 4453135.42638738 4940310.837750019 4070923.665503598 4353735.167488247 5800731.072373153 4653242.660626429 5175125.7188830115 6197908.246673547 5007472.451827688 0.68373753639107 0.8892980379277015 0.9865877217051576 0.8129697576304674 0.8694476523578613 1.1584149744560115 0.9292597623633521 1.0334806169515982 1.2377318709784133 1.0 22.255651148523235 6.1800314277039226 0.2878438057056687 1.0923651723968113 5.4428664792886316e-11 0.5000566289157913 0.10868883392895597 16.40324178017629 0.5802444577699034 0.12094141300505806 7.363817233003513 1513670.7812024017 -6.1800314277039226 -1.0923651723423826 DLYDDKDGLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DLYDDKDGLR 10 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ;;;;; 181.4 1.7252e-06 4860220000.0 7939230.0 6944830.0 5984050.0 5619490.0 5632900.0 7702950.0 7608250.0 7342680.0 10817640.0 7312570.0 False True 7896486.067811372 7175984.468311604 6826552.225704983 6330916.857820703 6350216.426185954 7170463.197293886 7240209.881162553 7890628.066973555 8151777.570949529 6845875.521993856 1.1534662063956906 1.0482201210432767 0.9971773812966956 0.9247782606448602 0.9275974133307727 1.0474136104662175 1.0576017425239201 1.1526105085643472 1.190757492560328 1.0 22.70680362950207 2.059476359662719 2.521748949655347 1.1284051882019621 1.0077085225165923 0.23564765775378904 0.0767507558461681 0.3588832415319121 4.419584338123507 0.03954917509567322 0.023413179791167027 114.67700965682323 -2.059476359662719 -0.12069666568536985 DLYDDKDGLRK ddPTM_BT-474_Trastuzumab_2h_R1 3 DLYDDKDGLRK 11 2 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ;; 123.95 0.0002021 1495980000.0 2582250.0 2295800.0 1863890.0 1774020.0 1743900.0 2524830.0 2499160.0 2424800.0 4200700.0 2542380.0 False True 2568347.452914944 2372214.315159594 2126309.510777694 1998610.750105633 1965975.3280948827 2350294.444910521 2378266.0830816813 2605750.888884914 3165493.7714961544 2380123.1317589744 1.079081757848749 0.9966771397269958 0.8933611385081136 0.8397089727994898 0.8259973199966233 0.9874675866763208 0.9992197678126339 1.0947966742204613 1.3299705923856007 1.0 21.182604780245196 1.7698562393416162 2.1251820722106967 1.171616030781115 0.9302354722281145 0.4414701834319428 0.10339842657541311 0.25784279371981117 2.321180562405427 0.06908700047907726 0.03002753377902318 58.864876790995176 -1.7698562393416162 -0.24138055855300045 DLYEDELVPLFEK ddPTM_BT-474_Trastuzumab_2h_R1 5 DLYEDELVPLFEK 13 0 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;;; 259.55 1.3047e-23 663091000.0 806931.0 848120.0 769361.0 677482.0 669665.0 937460.0 894359.0 844514.0 1232137.0 906996.0 False True 802586.5731544625 876349.1615006329 877680.3413943085 763251.1517362047 754942.8683345718 872655.5967434705 851095.4383868369 907535.9230351998 928493.3461399198 849110.7387616575 0.9452083650772739 1.0320787636942383 1.0336464978340951 0.8988829335138662 0.8890982458137086 1.0277288425490305 1.0023373860847336 1.0688074966037404 1.0934891101413156 1.0 19.69559319293119 2.178411836225934 1.9827878876659586 1.057326095914299 0.9663980110744037 0.34192247929713604 0.05252831055028694 0.3913452923695041 3.053028307157429 0.028436350109777384 0.017484290607473255 150.80364411423204 -2.178411836225934 -0.09092808483989523 DLYEPSHGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DLYEPSHGAK 10 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ;;; 148.32 2.5323e-05 1695960000.0 1486980.0 1612380.0 1465210.0 1331020.0 1328630.0 1660750.0 1678900.0 2915360.0 2129210.0 2267920.0 False True 1478974.2648990077 1666047.093595706 1671498.8321663747 1499526.9955274458 1497823.155093015 1545946.2614849918 1597685.1929791716 3132918.967098116 1604494.7254522657 2123179.403936 0.6965846890551266 0.784694449516206 0.787262173449738 0.706264855785426 0.7054623609838693 0.7281279474636387 0.7524965577648998 1.4755790119714975 0.7557037914355308 1.0 21.017794850239344 1.8846622948977503 12.298981589490989 1.1270215927332414 0.7371404232664303 0.45310186648046746 0.16851223677375501 0.46697078806833237 47.500696289413135 0.06544730705782181 0.041923101002905964 76.67650250422226 -1.8846622948977503 -0.3898811694668112 DLYLASVFHATAFELDTDGNPFDQDIYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DLYLASVFHATAFELDTDGNPFDQDIYGR 29 0 P50454;E9PKH2 P50454 SERPINH1 Serpin H1 0 ;;; 314.72 3.6314999999999975e-92 1366688000.0 307754.0 528445.0 535763.0 562298.0 532794.0 579580.0 646431.0 558662.0 622413.0 606283.0 False True 306097.08665868384 546033.9723732518 611193.7734645231 633484.8691462871 600642.157782548 539514.9987845677 615160.6629237711 600352.1952681544 469027.65605690365 567589.4998750098 0.5392930748826225 0.9620226809930332 1.0768236086099472 1.116096878617008 1.0582333850693448 0.9505373142092579 1.0838126199643177 1.057722518475693 0.8263501283237081 1.0 19.114488374937512 4.731913809169059 3.4836936764122037 1.0299542602009826 0.4826712356234659 0.7657203182666217 0.0793254981679496 0.12678287086178594 2.6926996573291566 0.018958853923864434 0.18152777889292213 53940.35609318533 -4.731913809169059 -0.5472830245775167 DLYQEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 DLYQEWK 7 0 Q9NQT8;H0Y307;A0A1B0GUA8;Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9 Q9NQT8;A0A1B0GUA8 KIF13B;KIF13A Kinesin-like protein KIF13B;Kinesin-like protein KIF13A 0 83.206 0.052228 190130000.0 210560.0 205600.0 201580.0 196880.0 223080.0 248950.0 215090.0 164920.0 277270.0 228180.0 False True 209426.36835541512 212443.27171217537 229960.71183523032 221804.98781343855 251487.91570124845 231740.67246526503 204685.27497640727 177227.16784679113 208940.52372764982 213617.35704527382 0.980380860676174 0.9945037924383194 1.0765076163099083 1.0383284901630416 1.1772822170435728 1.0848400882337954 0.9581865341261876 0.8296477884483413 0.9781064919896336 1.0 17.704669349485634 2.1029897808091276 4.8752761114403125 0.9118682119800071 1.0604376523324464 0.4107264416771106 0.06702029373507198 0.17593499328727005 6.907843269180766 0.027073098157103265 0.01959145895661758 126.76220376548494 -2.1029897808091276 0.14856944035243924 DLYVNPNHQTSLGQER ddPTM_BT-474_Trastuzumab_2h_R1 2 DLYVNPNHQTSLGQER 16 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 ; 66.809 0.053536 809690000.0 104683.0 107893.0 110013.0 127086.0 123623.0 122857.0 124039.0 97814.0 135269.0 125367.0 False True 104119.39835937465 111484.1532823043 125501.87414986201 143175.07456957878 139365.65627907228 114364.18476427015 118038.75969500483 105113.37736942794 101933.76746173576 117365.97072791145 0.8871344710363601 0.9498848140638403 1.0693208037346016 1.219902785122447 1.1874451803594972 0.9744237111913783 1.0057324023558165 0.8956035273044467 0.8685121149642937 1.0 16.84065464627 2.1283950965711855 2.054677613516325 0.9152451197999345 1.0626190976707846 0.24072253063716276 0.10014532110301513 0.469858650462148 3.8787494914143537 0.057531764168438616 0.034059867334479785 134.39870886268233 -2.1283950965711855 0.14737397787085005 DMAEAHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMAEAHK 7 0 F5H169;F5H5V4;F5GX23;J3KN29;O00233-2;O00233 F5H169 PSMD9 26S proteasome non-ATPase regulatory subunit 9 0 ; 89.29799999999999 0.017975 698000000.0 686130.0 616720.0 586450.0 621280.0 638510.0 564320.0 706740.0 618910.0 952770.0 731880.0 False True 682435.9523162091 637247.152384888 669017.0624852201 699933.984298726 719820.4637547248 525309.8866663924 672552.286191018 665096.2069612998 717972.5999639076 685170.7918060069 0.9960085287894581 0.9300559218311111 0.9764237916823513 1.0215467335579287 1.0505708538120644 0.7666845886435917 0.9815834157470016 0.9707013417898426 1.0478739148693716 1.0 19.38610412642093 1.3844253825414499 4.265832629518235 1.0232754324941828 0.9594685431206538 0.10326111565454277 0.07318396420961794 0.5105713190425457 14.576305027691093 0.05411004633028633 0.018741253956648114 24.234015567761585 -1.3844253825414499 -0.06380688937352907 DMASPNWSILPEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 DMASPNWSILPEEER 15 0 Q15814 Q15814 TBCC Tubulin-specific chaperone C 0 ; 244.46 1.1430999999999999e-17 234505000.0 55961.0 84750.0 70722.0 73701.0 71560.0 70421.0 67087.0 71481.0 80641.0 76653.0 False True 55659.7121938516 87570.85251754314 80679.04287335635 83031.53904326624 80672.74183064971 65552.9620232031 63841.74551277257 76815.27519316337 60768.106084038714 71760.93991406496 0.7756268557867988 1.2203136221795707 1.1242751693326616 1.1570575739768463 1.124187363310135 0.9134908503386936 0.8896447787504488 1.0704329581684837 0.8468131292149969 1.0 16.130911166134382 2.741303440897139 24.98202192122107 0.9539830380347839 1.0947793430368815 0.22309597818052074 0.12496925520577967 359.5258699831298 3274627.4150596517 0.03774728418128228 0.03841791841613899 551.1926793870073 -2.741303440897139 0.1407963050020976 DMDDAYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DMDDAYDR 8 0 P07686;Q5URX0;H0Y9B6;H0YA83;H0Y9M3 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A 0 ;;; 95.099 0.02301 1878460000.0 2194790.0 2509320.0 2194700.0 2131510.0 2105730.0 2244390.0 2427470.0 2050270.0 2683990.0 2173200.0 False True 2182973.4945040955 2592841.199284025 2503694.683325625 2401358.947451356 2373882.2338604513 2089240.6020257717 2310044.002264075 2203271.5584601066 2022556.6281234 2034504.5154298719 1.0729754974482588 1.274433740313514 1.230616429866521 1.1803163518386053 1.166810992974804 1.0269038904464336 1.1354332146940378 1.0829524052418118 0.9941273724310475 1.0 20.95624605169257 2.24721549986122 0.5899581007154486 1.0037129753873826 1.2071887558635457 0.5503816332774776 0.06164642752068707 0.6207773967923256 0.4346894296433263 0.055208288177958934 0.04174593841558742 176.69143580592146 -2.24721549986122 0.2034757804761631 DMDDEESWIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMDDEESWIK 10 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 196.88 7.5678e-07 219070000.0 610980.0 467930.0 409130.0 338760.0 372930.0 528250.0 441110.0 459420.0 606780.0 490690.0 False True 607690.5515662598 483504.7671803412 466731.94777829 381646.9812661543 420420.4249707124 491733.320866745 419771.8240961599 493704.2532874904 457247.1994354363 459373.74409915536 1.3228674023543898 1.0525302618862282 1.016017902141021 0.8307984210429237 0.9152034272119067 1.0704428086786886 0.9137915030806649 1.0747332855421639 0.9953707744706017 1.0 18.809308875035033 4.775977836683117 2.1217879630549663 0.9774845003904938 1.43820066750261 0.6850919208317017 0.07040407364172524 0.45585831611658395 2.115606541639882 0.018606478697807075 0.41449585395985433 59700.48189054224 -4.775977836683117 0.46071616711211616 DMDEPS(ph)PVPNVEEVTLPK ddPTM_BT-474_Trastuzumab_2h_R1 8 DMDEPSPVPNVEEVTLPK 18 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK 329.64 7.703499999999997e-75 4764063000.0 3946017.0 3014616.0 2763097.0 2576464.0 2605188.0 3819764.0 3678206.0 3374302.0 4909719.0 3589463.0 True False 3924772.0829157075 3114955.6711861445 3152117.040330338 2902644.0782291973 2936943.249640948 3555712.705437275 3500277.123668567 3626109.5495983684 3699784.5393139985 3360380.3982461165 1.1679547008916502 0.9269651950154016 0.9380238743136112 0.8637843738596305 0.873991305024225 1.0581280343419182 1.0416312169584927 1.0790771043334688 1.101001702439708 1.0 21.680193126018626 2.6984368892666386 17.231451949381153 1.0610939362826004 0.9467190805515289 0.2739585153902685 0.08222810126768833 17.79303843797363 7640.4193300296965 0.026948734999249456 0.025412298302778746 499.3866051554385 -2.6984368892666386 -0.11437485573107153 DMDLTEVITGTLWNLSSHDSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMDLTEVITGTLWNLSSHDSIK 22 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30 O60716-13 CTNND1 Catenin delta-1 0 87.32600000000002 0.002163 55396000.0 36336.0 57301.0 58860.0 71556.0 70130.0 84275.0 95230.0 72672.0 81122.0 86442.0 False True 36140.37101330914 59208.229145814046 67146.97637970856 80614.98226319795 79060.63980692367 78449.26761201124 90623.36108607233 78095.15366093878 61130.570079108504 80925.19755328038 0.44658983982726347 0.7316414532918738 0.8297412723089077 0.9961666415472364 0.9769594909529989 0.9694047093349509 1.1198410856693526 0.9650288911500239 0.7553959944164576 1.0 16.304301361871943 4.717396472876791 1.111949662223609 0.9783642606603478 0.20147170863637134 0.7764297254764027 0.08692153852869494 0.7281447120389399 0.7623038586990968 0.0260791639538819 0.6595269006465921 52167.07335408446 -4.717396472876791 -0.7768925520239764 down DMDLWEQQEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 DMDLWEQQEEER 12 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 184.03 3.4536e-05 189166000.0 135420.0 149378.0 129513.0 137594.0 137346.0 133305.0 133848.0 118271.0 148131.0 140000.0 False True 134690.91376657636 154349.95642909224 147747.30465282348 155013.3862921695 154836.19898647867 124089.93911621673 127373.26089098598 127096.98258796918 111626.09990370575 131065.08013996966 1.0276643757645783 1.1776588872051634 1.127281992236515 1.182720722610664 1.1813688193767773 0.9467810875612032 0.9718321673092403 0.969724219847401 0.8516845202741703 1.0 16.999923831853575 2.7321788358590013 24.817296782921748 0.9501180333999826 1.1432081122893358 0.7476832272944794 0.055545252339351495 222.92910290586346 866918.3812320767 0.01730249438261464 0.016682584152229587 539.7328305275612 -2.7321788358590013 0.19309007888935326 DMEDLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DMEDLLR 7 0 M0QZR4;Q92888;Q92888-3;M0QYC1;Q92888-2;Q92888-4;M0R2C7 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 0 ;;; 140.98 0.0060199 217527000.0 473681.0 564630.0 487620.0 497790.0 473708.0 566960.0 546180.0 479190.0 667810.0 542150.0 False True 471130.7541269069 583423.3682239567 556272.6575309797 560810.1629604414 534031.905912708 527767.3896802829 519759.18678978167 514949.5910775162 503237.1736955381 507549.5228420324 0.9282458812862281 1.1494905264752635 1.0959968091707017 1.1049368341835397 1.0521769440790467 1.039834274151299 1.0240561036869487 1.0145799924981644 0.991503589398829 1.0 18.95318907086842 2.390207321341758 1.2880264225152116 1.0031494256702729 1.0759827632803776 0.209574601288111 0.053955037467054774 0.6392920604567036 2.1203775506684486 0.02950738824407676 0.019716562335939422 245.58810121722695 -2.390207321341758 0.07283333761010469 DMEESIR ddPTM_BT-474_Trastuzumab_2h_R1 6 DMEESIR 7 0 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;;; 189.62 0.0012852 5786160000.0 4731580.0 5647720.0 5120520.0 4868360.0 4720630.0 5353940.0 5564750.0 5113940.0 6251300.0 4967450.0 False True 4706105.699007954 5835700.946081168 5841444.707642291 5484693.876835809 5321774.2491338635 4983834.729619123 5295561.783090624 5495568.170861141 4710750.878128388 4650423.088152094 1.0119736655784553 1.2548752738108524 1.2561103789727366 1.179396750117036 1.1443634586049116 1.0716949049897124 1.1387268819867493 1.1817350952136436 1.0129725379460617 1.0 22.148930545633448 0.9969977031685034 0.6137050568238037 0.9920751406543865 1.1736605149511534 0.32707546721994585 0.07544710785342765 1.012478553384502 0.9089070943288519 0.07854931308862442 0.03357273464768633 9.931107961916675 -0.9969977031685034 0.1815853742967669 DMEQFFDDLSDSFSGTEPEVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMEQFFDDLSDSFSGTEPEVHK 22 0 F5GY68;F5H0F9;Q9UJX4-3;Q9UJX4;F5GZ05;F5H3S5 F5GY68 ANAPC5 Anaphase-promoting complex subunit 5 0 ; 131.56 1.1923e-05 68988000.0 92887.0 90669.0 81970.0 78374.0 74641.0 107475.0 97747.0 94217.0 127991.0 102073.0 False True 92386.9067127159 93686.86285443198 93510.66350398773 88296.14036413275 84146.08891813189 100045.50621893686 93018.60418019844 101247.95096423189 96449.33304153217 95558.61375090819 0.9668087793062806 0.9804125361073646 0.9785686484291324 0.92399980387214 0.8805704228555971 1.046954348665256 0.973419355189363 1.0595376700226526 1.009321182629813 1.0 16.54409830461623 2.7155120813017035 24.954905878771726 1.020926161614133 0.9485589661061008 0.5065073202740441 0.0353152625014643 674.3523515572274 730127.9004118305 0.01183352075232166 0.0111638782368186 519.4121224294316 -2.7155120813017035 -0.07236719550803217 DMES(ph)PTKLDVTLAK ddPTM_BT-474_Trastuzumab_2h_R1 18 DMESPTKLDVTLAK 14 1 E7EVA0;P27816-6;P27816;P27816-2;P27816-5;H7C456 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DMES(0.925)PT(0.075)KLDVTLAK;DMES(0.977)PT(0.023)KLDVTLAK;DMES(0.811)PT(0.189)KLDVTLAK;DMES(0.597)PT(0.403)KLDVTLAK;DMES(0.992)PT(0.008)KLDVTLAK;DMES(0.953)PT(0.047)KLDVTLAK;DMES(0.851)PT(0.113)KLDVT(0.037)LAK;DMES(0.956)PT(0.044)KLDVTLAK;DMES(0.987)PT(0.013)KLDVTLAK;DMES(0.998)PT(0.002)KLDVTLAK;DMES(0.982)PT(0.018)KLDVTLAK;DMES(0.581)PT(0.419)KLDVTLAK;DMES(0.947)PT(0.053)KLDVTLAK;DMES(0.582)PT(0.418)KLDVTLAK;DMES(0.832)PT(0.168)KLDVTLAK;DMES(0.979)PT(0.021)KLDVTLAK;DMES(0.98)PT(0.02)KLDVTLAK;DMES(0.976)PT(0.024)KLDVTLAK 218.63 1.3973e-11 50391002000.0 39062769.0 26359434.0 23725762.0 22198901.0 21708781.0 35963686.0 35461956.0 33901472.0 59564610.0 34924358.0 True False 38852459.39198561 27236791.826075666 27066143.0615798 25009279.590495415 24473265.582324084 33477601.036230728 33746525.71045264 36431371.9888267 44885709.99038192 32695455.572192818 1.1883137491752604 0.833045184702681 0.8278258427021065 0.7649160763419849 0.7485219322999239 1.0239221460704502 1.0321472852989926 1.1142640881202843 1.3728424701491788 1.0 24.962586789871487 2.138762505331446 1.610733591794927 1.1750300172518313 0.8669881252847759 0.4088045075314599 0.14675005680670536 0.360946012833707 1.8038956117146436 0.0861567060916424 0.04761406060681486 137.64565454648653 -2.138762505331446 -0.30804189196705545 DMETIGFAVYEVPPELVGQPAVHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMETIGFAVYEVPPELVGQPAVHLK 25 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 166.49 1.3902e-11 708440000.0 1001030.0 1026810.0 1072210.0 922750.0 916360.0 1239230.0 1226670.0 1083640.0 1461480.0 1248550.0 False True 995640.5657048887 1060986.7501302485 1223167.8481836119 1039570.0553883102 1033053.0143087488 1153564.9469336425 1167331.2857655399 1164506.7194124241 1101317.836828672 1168866.4700625662 0.8518000911187014 0.9077056937679603 1.0464564426406542 0.8893830749826068 0.8838075526740469 0.9869090922523386 0.9986866042132733 0.9962701037613743 0.9422101369455157 1.0 20.15667869681412 2.7145253792544395 23.240751341768178 0.9867185209840033 0.9211668802591344 0.31529110883006417 0.05048589730632181 435.615404861031 421214.8283556461 0.016894382904250445 0.01593892036073997 518.2333755888867 -2.7145253792544395 -0.06555164072486885 DMFCAGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DMFCAGR 7 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;;;;; 144.29 0.0054992 2484840000.0 1799530.0 2295140.0 2117220.0 2035080.0 1983720.0 2144350.0 2176840.0 1961380.0 2635410.0 2167810.0 False True 1789841.5304265774 2371532.347458571 2415306.172793862 2292720.919338548 2236334.98357038 1996116.131756944 2071537.9328636532 2107748.135285831 1985948.5181847513 2029458.5098444852 0.8819305848059592 1.1685542404315024 1.1901234546445316 1.1297205181663144 1.101936783985669 0.9835708008191327 1.020734310563655 1.0385766080270078 0.9785607877920756 1.0 20.95266341527086 2.751912430788406 21.971938022133152 1.0106594827527715 1.1058442067210326 0.2318441533891058 0.08032235918583011 225.19034159507598 370574.64948727924 0.02450272766062137 0.02579912346086385 564.8230749118528 -2.751912430788406 0.09518472396826105 DMFDPHGWSEDSYYEALAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMFDPHGWSEDSYYEALAK 19 0 X6R3T8;J3QLH3;J3QQJ0;Q9UHR5-2;Q9UHR5;J3QLM2;J3KRR6 X6R3T8 SAP30BP SAP30-binding protein 0 ; 230.05 6.6064e-20 217590000.0 409260.0 416710.0 379990.0 375230.0 371910.0 448260.0 456280.0 414020.0 561480.0 467140.0 False True 407056.5896330608 430579.94044348545 433489.28906771046 422734.0795268012 419270.5340167256 417272.84129053884 434207.9932411325 444916.2747509609 423110.7774465354 437326.7252613249 0.9307837049972737 0.9845726674631926 0.9912252419713856 0.9666321656290183 0.9587123534839774 0.9541443895092329 0.9928686452484038 1.0173544150202594 0.9674935305947865 1.0 18.738351989386587 2.1276370125732678 6.180155656904376 0.9987855259345655 0.9664236974663339 0.3582341277054155 0.019385636517566616 0.22454467073421622 11.39167721234781 0.007396525780747577 0.005438886472415165 134.16431343926786 -2.1276370125732678 -0.032361828468231546 DMFEEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMFEEALR 8 0 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RG31 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 ; 129.55 0.0025258000000000004 595400000.0 944000.0 982740.0 949280.0 952490.0 847620.0 1047160.0 1133860.0 909290.0 1276010.0 1073160.0 False True 938917.6088882594 1015449.9068211254 1082930.3727103253 1073075.1363390004 955559.3827626499 974772.2939494945 1079010.8600341685 977145.8370810617 961554.4331579984 1004670.0100214991 0.9345532359109309 1.0107297885794317 1.0778965848569038 1.068087158604483 0.951117653787836 0.9702412575534479 1.073995291260937 0.9726037677387738 0.9570848373760275 1.0 19.938290286567366 3.2356600627302297 24.999521784992755 0.9903578258718877 1.0258876151386935 0.10999047970466425 0.04848961969465409 186.87602829188384 1610663.2315325956 0.01452427267599957 0.018080133881257322 1720.521336399084 -3.2356600627302297 0.035529789266805833 DMFQETMEAMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMFQETMEAMR 11 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 118.28 0.0017258 179892000.0 147568.0 161803.0 162037.0 127347.0 109411.0 141822.0 151357.0 118246.0 197402.0 162609.0 False True 146773.51028434615 167188.51504302112 184850.40114914763 143469.11714281788 123343.84232019576 132018.17895307823 144035.28367011077 127070.11696102159 148754.92215128028 152231.15440343114 0.9641489671383456 1.0982542679795435 1.214274449100422 0.9424425486691588 0.8102404714958643 0.8672218211208853 0.9461616725864122 0.8347182116498326 0.9771647776976162 1.0 17.21590411385543 3.5446373268185685 7.361817385856158 0.8930123241447363 1.0916929148759722 0.5201788128266155 0.079769095658242 0.19497069424290686 18.70719561117047 0.020653798775934356 0.03195144273319263 3504.5908828944207 -3.5446373268185685 0.1986805907312359 DMFVEMLDDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMFVEMLDDFR 11 0 Q9Y2K1-2;Q9Y2K1 Q9Y2K1-2 ZBTB1 Zinc finger and BTB domain-containing protein 1 0 ; 140.3 0.0032088 10754000.0 45907.0 54488.0 47927.0 52124.0 49097.0 55779.0 49132.0 44106.0 59672.0 52470.0 False True 45659.84181274718 56301.60014130845 54674.705011048165 58722.89305560587 55349.211929281766 51923.129019642525 46755.29745753336 47397.41368572993 44966.635163834246 49121.31967817294 0.9295320669700193 1.1461744210086047 1.113054481623442 1.1954665192291116 1.1267859310766073 1.0570385600351566 0.9518330892545029 0.9649051368379863 0.9154199329016637 1.0 15.584061699776694 2.374698103383977 3.199896096719795 0.9551583744448586 1.1096934215903531 0.5033782019596934 0.0673501275305672 0.1947264697383117 3.993929958704465 0.02515023103652136 0.020372833164266503 236.97258354840392 -2.374698103383977 0.1545350471454945 DMGEDLECLCQIMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMGEDLECLCQIMR 14 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ; 138.45 3.0499e-05 52968000.0 73276.0 77878.0 69369.0 61861.0 67413.0 83331.0 74271.0 86098.0 93479.0 90412.0 False True 72881.49015772896 80470.12215175493 79135.55223384302 69692.59625724878 75997.6459618444 77570.52411007421 70678.22798722752 92523.06995678543 70442.35300442518 84641.82875439241 0.861057602727503 0.9507134160021207 0.9349461536738873 0.8233824491136381 0.8978733928631071 0.9164561452844172 0.8350271848723465 1.0931128417045695 0.832240442356577 1.0 16.369083177918107 1.7616332709084839 24.99999999999992 0.9833194572354211 0.8916052784632192 0.23659289862618005 0.07069325520171797 16.093488777015917 17451.072516451168 0.030799573213898986 0.01708043459462528 57.760809473467944 -1.7616332709084839 -0.0917141787722019 DMGSCEIYPQTIQHNPNGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DMGSCEIYPQTIQHNPNGR 19 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ;;;;; 319.67 6.982599999999998e-62 7041300000.0 3720608.0 4246134.0 4015569.0 4260197.0 3966432.0 4360318.0 4256445.0 3812610.0 4489641.0 4401227.0 False True 3700576.659926412 4387464.00334779 4580926.211248562 4799537.503392157 4471533.604315647 4058899.4797445224 4050544.4941510707 4097126.3182413015 3383229.1336571947 4120336.9247799926 0.8981247717075967 1.0648313677848227 1.111784374646295 1.164841029025419 1.0852349421775518 0.9850892181496176 0.9830614748494995 0.9943668183057796 0.8211049716129328 1.0 21.974330882420787 2.5857573171769452 3.101061693346239 0.956422400868842 1.0729448431839768 0.31876746993503513 0.07954574161892515 0.3319673606159554 6.1012398905334155 0.02874883612095292 0.0263628485413799 385.263013360591 -2.5857573171769452 0.11652244231513476 DMGYGNWISKPQEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMGYGNWISKPQEEK 15 1 A0A3B3IRQ9;P55265-3;P55265-2;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 186.96 3.2846e-07 1961040000.0 1373090.0 1149070.0 1167800.0 1074890.0 1100330.0 1429290.0 1468040.0 1407000.0 2022130.0 1425010.0 False True 1365697.4360046391 1187316.1003225155 1332216.0893004348 1210970.9637890458 1240450.5033331306 1330486.5464867589 1397025.2967425962 1511997.4846012322 1523803.156653776 1334064.641787559 1.023711590297974 0.8899989274369717 0.9986143456402178 0.9077303496826242 0.9298278842552999 0.9973178996064196 1.0471946058555859 1.1333764776010065 1.1422258779094692 1.0 20.347397142988278 2.2234406516476084 2.2242442010943333 1.104199738600239 0.9481045434358448 0.5787554058079952 0.05267348319954087 0.18246439434944228 1.8305519119284295 0.022820607776787048 0.015245633250807375 167.27870266839852 -2.2234406516476084 -0.15609519516439407 DMHDWLYAFNPLLAGTIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DMHDWLYAFNPLLAGTIR 18 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 90.972 0.0026067 51877000.0 98676.0 118370.0 99394.0 101200.0 102570.0 120590.0 116670.0 71540.0 145770.0 113560.0 False True 98144.7393799343 122309.87389382393 113387.81125186475 114011.90962373029 115631.68151997948 112253.89713832625 111026.2263773185 76878.67807275926 109846.93671792657 106312.50357639266 0.9231721206660393 1.150474965589876 1.066551980599234 1.0724223942464595 1.0876583433752962 1.0558861221593216 1.0443383670062734 0.723138628915053 1.033245695686154 1.0 16.697951758858277 1.9614406867541425 23.19261083060697 0.8869587351178412 1.0644096083607177 0.29484983057596525 0.09436760633038711 204.64544325686705 123089.10563314187 0.03639851087626026 0.023496409858902872 91.50412800861585 -1.9614406867541425 0.17745087324287656 DMHSAYK ddPTM_BT-474_Trastuzumab_2h_R1 6 DMHSAYK 7 0 P08621;P08621-2 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;;;; 151.29 0.0018911 6116950000.0 6387730.0 8107860.0 7076610.0 6741900.0 6720000.0 6764070.0 7399250.0 2876844.0 8027320.0 6317270.0 False True 6353339.171423523 8377725.218795124 8072935.177003222 7595423.848737412 7575752.167439434 6296485.761808092 7041320.009620073 3091528.7075978327 6049094.546577125 5914096.420113042 1.0742704751678847 1.416568926793891 1.3650327291838296 1.284291514576327 1.2809652784278804 1.0646572721395944 1.190599460920775 0.5227389761661582 1.0228265007660295 1.0 22.49572633386543 1.8943481124397592 7.496911892750291 0.8053415055556131 1.252647318630856 0.5373174294330476 0.16543866269018453 0.17924479916846298 11.28400382803678 0.06969223685510079 0.04336330789170343 78.40578592093473 -1.8943481124397592 0.44730581307524286 DMIHIADTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMIHIADTK 9 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90;H0Y7E6 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ; 129.85 0.00037767 602860000.0 1409700.0 1314850.0 1510510.0 1063790.0 1043930.0 1450570.0 1406530.0 1223960.0 2067710.0 1393450.0 False True 1402110.3318323952 1358613.987406391 1723176.6784117145 1198465.704927153 1176868.297642119 1350295.51017449 1338490.7704336147 1315298.110342946 1558150.5763944837 1304518.8280074336 1.0748103451860684 1.0414675190863931 1.3209289443861483 0.9187032637602711 0.9021474220036423 1.035090855865206 1.026041741749386 1.0082630331614124 1.1944255176251124 1.0 20.31508633592257 3.7044848046595265 24.998633366923503 1.0096528563310478 1.135309050410354 0.2670979729663212 0.10094657023233017 846.0654467067789 620688.9802953774 0.02691547451136159 0.041699708705365636 5063.896313676287 -3.7044848046595265 0.12565619407930617 DMKEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DMKEER 6 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 67.757 0.089314 208940000.0 260920.0 275840.0 239630.0 246530.0 276440.0 236310.0 304620.0 289120.0 462600.0 365820.0 False True 259515.23571093698 285021.16765119886 273367.82109870145 277740.6727227094 311642.99541174935 219974.44591390522 289884.36683859397 310695.60252161213 348598.42852241773 342473.05440574075 0.757768333515312 0.8322440670427856 0.7982170205274961 0.8109854750606439 0.909978146901257 0.6423116887125759 0.8464443059370067 0.9072118186370345 1.0178857111176403 1.0 18.38563095651151 1.557050122848787 2.294194545982537 1.0070238193084318 0.798245134302666 0.6311870651340582 0.06474957282852933 0.17221043382194215 1.9360294157348663 0.048329081855547906 0.017218796145864145 36.062026057039816 -1.557050122848787 -0.2087786850057658 DMLDALGITALLNVSSDCPNHFEGHYQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMLDALGITALLNVSSDCPNHFEGHYQYK 29 0 Q13115-2;Q13115 Q13115-2 DUSP4 Dual specificity protein phosphatase 4 0 233.43 1.9757e-45 99504000.0 129840.0 142060.0 129540.0 137260.0 144750.0 129540.0 139110.0 72985.0 115440.0 104710.0 False True 129140.95586658013 146788.3812229165 147778.10601813527 154637.10192641497 163183.05449953227 120585.20470435983 132380.7178481938 78431.51131032064 86991.35881674859 98027.31815325885 1.3173976224125328 1.497423208022718 1.5075196261831272 1.5774898756757854 1.6646691715508017 1.2301183687983108 1.350447205351735 0.8000985111894876 0.887419552585777 1.0 16.580896233594718 1.988535577043791 1.806728452357666 0.8714825151258649 1.4985508956363807 0.7906154651400537 0.1299959293990737 0.14244611810483335 0.8661767571751529 0.07837384808909234 0.03905681032940591 97.39475670377462 -1.988535577043791 0.6270683805105157 DMLDSHLENK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMLDSHLENK 10 0 Q9GZT8-2;Q9GZT8 Q9GZT8-2 NIF3L1 NIF3-like protein 1 0 ; 157.78 8.5683e-06 1085180000.0 2949780.0 2793280.0 2424520.0 2289450.0 2437880.0 3280000.0 3071500.0 2797310.0 4186600.0 3279200.0 False True 2933898.7122313697 2886252.636226582 2765871.341694376 2579294.1352574048 2748329.567553159 3053261.32028949 2922919.810730553 3006059.4766523615 3154868.527565837 3069918.6485356367 0.9556926577291718 0.9401723519948438 0.9009591648344517 0.8401832199976172 0.8952450804727751 0.9945740163980917 0.9521163735478129 0.9791984155952352 1.027671703636421 1.0 21.549768994656027 2.7386039611544835 24.999999914932452 0.9853806757335383 0.9043373402945735 0.6074796581395248 0.03370883756561743 3.063010503414172 1766871.0073480746 0.01157908401741136 0.011579308341959159 547.7772118514514 -2.7386039611544835 -0.0810433354389648 DMLEAGILDTYLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMLEAGILDTYLGK 14 0 P50990-2;P50990;P50990-3;H7C2U0 P50990-2 CCT8 T-complex protein 1 subunit theta 0 197.31 5.4942e-08 60071000.0 171800.0 162110.0 159550.0 139950.0 149550.0 207630.0 179570.0 182720.0 245170.0 206410.0 False True 170875.0478887746 167505.73335243567 182013.25316653936 157667.65565060332 168594.30604770323 193277.02680844715 170883.51307598437 196355.49423335967 184751.138609687 193236.73708350828 0.884278271656647 0.866842070925919 0.9419184773746276 0.8159300246436391 0.8724754339794316 1.0002084993027047 0.8843220789954457 1.016139566403999 0.9560870329219325 1.0 17.560009871766837 2.7495220244855867 24.617968247807227 0.9687279756604721 0.87605684936799 0.534832619108502 0.04429366974583231 468.3107106532186 1051767.5937547735 0.013115737518780307 0.013783627856825865 561.7227644215375 -2.7495220244855867 -0.09267112629248209 DMLLANKVPAAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMLLANKVPAAAR 13 1 F8VWS0;P05388;P05388-2;F8VU65;F8VW21;F8VQY6;F8VRK7;G3V210;Q8NHW5;F8VWV4;F8VPE8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 ; 200.21 1.0187999999999997e-07 4241600000.0 4123700.0 4899700.0 5063500.0 4937000.0 4435900.0 4986200.0 5650700.0 4934400.0 8384200.0 5741600.0 False True 4101498.4573861426 5062783.552568806 5776396.787269012 5562023.693797992 5000785.571360793 4641515.730252279 5377354.053229743 5302629.984375502 6318026.252524112 5375166.172368936 0.7630458902777578 0.9418840999919343 1.0746452485436828 1.0347631153041552 0.930349948447613 0.8635111141515976 1.0004070350182015 0.9865053124559559 1.1754104059148818 1.0 22.35787792539313 1.4628925398819626 3.7214095096267736 1.0883737064374481 0.9504839241052364 0.2663028586575782 0.09204367856917299 0.29406230185537285 7.862226363334354 0.06621882384646229 0.02426394991817387 29.033041834150815 -1.4628925398819626 -0.13788978233221172 DMLLANPHELSLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMLLANPHELSLLK 14 0 Q5TDH0;Q5TDH0-3;Q5TDH0-2;H0YII4;H0YI90 Q5TDH0 DDI2 Protein DDI1 homolog 2 0 100.45 0.0031966 0.0 164710.0 161490.0 159430.0 159890.0 171070.0 188750.0 185450.0 172550.0 227420.0 207080.0 False True 163823.21966100152 166865.09702723363 181876.35820959794 180132.05760610916 192854.75048867005 175702.15676970762 176479.075012203 185426.55719114633 171375.38827187268 193863.97710989224 0.8450420862259416 0.8607328680389434 0.9381647943109147 0.9291672454651072 0.9947941508460331 0.9063166834244325 0.9103242265176754 0.9564776290854534 0.8839981043756683 1.0 17.56468522799481 4.2718057731320584 4.443562522262237 0.9384555683592147 0.8491295778922975 0.49939072667237183 0.03493864415057856 0.15020601734256503 6.6174832745445995 0.008187062150789244 0.022905896216044073 18698.45713669513 -4.2718057731320584 -0.08932599046691725 DMLLELEEQLAESR ddPTM_BT-474_Trastuzumab_2h_R1 5 DMLLELEEQLAESR 14 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3;Q32MZ4-4 Q32MZ4-2;Q32MZ4-3;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ;;;; 207.66 2.1239e-08 210810400.0 171756.5 183355.4 161944.5 166138.7 159174.5 175662.0 180225.5 168181.8 186683.0 170879.1 False True 170831.78208794096 189458.27364831988 184744.8779531722 187171.84238541542 179444.42907382245 163518.89940386981 171507.3040367311 180732.37992587616 140677.47607403912 159973.4495410421 1.067875841760311 1.1843107352618116 1.154847122964457 1.1700181681548063 1.1217138193159044 1.0221627393358053 1.0720985546587838 1.1297648481319285 0.879380150128897 1.0 17.28747295833738 1.8113158654360237 0.6666049736212163 0.9722753851722605 1.1456751291139937 0.47065708156485986 0.06466899738988999 0.6565857849866299 0.586154879098416 0.06030344547392105 0.03202272573966134 64.76134583345453 -1.8113158654360237 0.1733997439417332 DMNETLPGERPDTIHLEGLPCK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMNETLPGERPDTIHLEGLPCK 22 1 Q02040;X6RAJ1;Q02040-2;Q02040-3 Q02040 AKAP17A A-kinase anchor protein 17A 0 110.44 0.00021467 114800000.0 100960.0 101290.0 89417.0 90997.0 70122.0 102510.0 107930.0 94438.0 120750.0 100160.0 False True 100416.44257771061 104661.37641890196 102006.13637350315 102517.21086986738 79051.62105434336 95423.72498258407 102709.01356736083 101485.44310644722 90992.78046710326 93767.70304870974 1.0709064988565096 1.116177244573574 1.0878600313000497 1.09331046337578 0.8430580944622075 1.0176608990092684 1.0953559725570576 1.0823070183742085 0.9704064140276 1.0 16.516803472066503 3.397135248504922 24.96120525467613 1.0137166151950805 1.0935981492967142 0.30101103528069184 0.0660540288815297 45.8130908859493 14293.71121876697 0.019928614398285655 0.0269834723169416 2495.371717583984 -3.397135248504922 0.07988153410163368 DMNQVLDAYENKKPFYLYTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMNQVLDAYENKKPFYLYTGR 21 2 P23381;P23381-2;G3V277;G3V5U1;G3V3Y5;G3V3H8;G3V456;G3V423 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS 0 ; 182.77 2.5605e-17 1264290000.0 434740.0 521940.0 457170.0 500050.0 544920.0 475830.0 474320.0 507540.0 863900.0 557760.0 False True 432399.408144155 539312.4573806074 521535.5622071246 563356.2787287183 614312.3320061152 442936.9920833383 451375.3295216402 545415.2120358985 651003.4206669198 522163.27927764 0.8280923330003898 1.0328425586086627 0.9987978529026711 1.0788891158873994 1.1764755515859984 0.848272963001337 0.8644333055094802 1.0445300037000402 1.2467430141152727 1.0 18.99414147925957 4.739845081732818 23.432815987386917 1.0259812864545523 0.828092188858894 0.2176192336209294 0.11561427299063742 76.82165735106811 1401069.9354723191 0.028384838103711344 0.175523428179557 54934.48807213781 -4.739845081732818 -0.19788909759565831 DMPGGFLFEGLS(ph)DDEDDFHPNTR ddPTM_BT-474_Trastuzumab_2h_R1 10 DMPGGFLFEGLSDDEDDFHPNTR 23 0 H3BUV9;Q96S82 H3BUV9 UBL7 Ubiquitin-like protein 7 1 DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR 305.17 1.5915999999999995e-62 4502203000.0 1789880.4 2065164.5 1762978.6 1962731.7 2041052.7 2069641.6 2031523.5 1861824.1 2291302.9 2113073.0 True False 1780243.8828008051 2133902.251964195 2011190.662795306 2211213.3319765874 2300968.6630778452 1926572.1476042832 1933250.947131591 2000762.8684932173 1726642.0021808436 1978214.8720471864 0.899924425782166 1.0787009450373273 1.016669468627538 1.1177821798944818 1.1631540615689802 0.9738942795483789 0.9772704545138396 1.0113981533374565 0.8728283396201553 1.0 20.915767708262756 2.5436013905051813 24.999696723991054 0.9720483939324753 1.0589447988880238 0.2627962197774206 0.07347651375388058 270.11179640187095 101574.04716433391 0.02382660529082403 0.022463929375977236 349.6241234122202 -2.5436013905051813 0.08689640495554851 DMQGLS(ph)LDAASQPSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DMQGLSLDAASQPSK 15 0 E9PLZ8;Q96EY5;M0QZK6;E9PQA6;Q96EY5-3;E9PLL0 E9PLZ8 MVB12A Multivesicular body subunit 12A 1 DMQGLS(1)LDAASQPSK;DMQGLS(1)LDAASQPSK;DMQGLS(1)LDAASQPSK;DMQGLS(1)LDAASQPSK 256.67 9.66e-25 831490000.0 1558180.0 956380.0 737600.0 944790.0 921400.0 957020.0 765750.0 783020.0 1397690.0 1067590.0 True False 1549790.9320100718 988212.5301560819 841447.6686658697 1064400.3171284979 1038734.8284343287 890863.4599827597 728707.7470509264 841452.928494995 1053248.027586463 999455.4921902169 1.5506352650220014 0.9887509127500045 0.8419060931086714 1.0649802071685657 1.039300735801686 0.8913488063690684 0.7291047502816047 0.8419113558033751 1.0538218418094483 1.0 19.93078279665818 4.733733143348404 3.8880091106778383 0.9189094061967521 1.608464856253368 0.755245059259404 0.10461627533792098 0.11942806487490804 3.6470049425149993 0.02729197899241436 0.2328406532897017 54166.795475264844 -4.733733143348404 0.689555450056616 DMS(ph)PLS(ph)ETEMALGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DMSPLSETEMALGK 14 0 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 2 DMS(1)PLS(0.986)ET(0.014)EMALGK;DMS(1)PLS(0.983)ET(0.017)EMALGK;DMS(1)PLS(0.97)ET(0.03)EMALGK;DMS(1)PLS(0.865)ET(0.135)EMALGK 154.6 3.9571e-07 44471000.0 632716.0 511349.0 456026.0 441949.0 463349.0 631183.0 583143.0 571400.0 839635.0 620384.0 True False 629309.5273573557 528368.9423480013 520230.4969509508 497899.6980859476 522353.7486653109 587550.8048549638 554934.1452674096 614040.7695104091 632718.2047825766 580790.5619825365 1.0835395210438667 0.909740923723703 0.8957282211596844 0.8572792512095242 0.8993840169892728 1.0116397257719738 0.9554806527384577 1.0572499102161244 1.089408551376566 1.0 19.147658483742198 2.0905528223338243 1.456178088550181 1.0536255185148549 0.9266120202442345 0.3455176279645915 0.06476730039025472 0.43104393709114674 1.7283648981555224 0.0422562906984686 0.021744763467544094 123.18358022497239 -2.0905528223338243 -0.12701349827062036 DMS(ph)PLSETEMALGK ddPTM_BT-474_Trastuzumab_2h_R1 17 DMSPLSETEMALGK 14 0 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DMS(0.999)PLS(0.001)ETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(0.99)PLS(0.01)ETEMALGK;DMS(1)PLSETEMALGK;DMS(0.996)PLS(0.003)ET(0.001)EMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(0.996)PLS(0.003)ET(0.001)EMALGK;DMS(1)PLSETEMALGK;DMS(0.959)PLS(0.041)ETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(0.546)PLS(0.4)ET(0.054)EMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK 342.32 4.222899999999998e-69 4251184000.0 8274408.0 6778888.0 6147512.4 5700255.0 5884227.0 7840442.0 7423224.0 7399700.0 10641471.0 7508080.0 True False 8229859.506701158 7004519.1891556755 7013028.710784337 6421906.698539693 6633548.4299041135 7298450.698955232 7064134.295650495 7951903.188915235 8019023.060455863 7028907.90640931 1.170858918096901 0.9965302266613287 0.9977408730009829 0.9136421737271414 0.943752360712439 1.0383477484888 1.0050116447263542 1.1313141806374063 1.1408632987129788 1.0 22.744869122007515 1.760745334525515 12.811707807531628 1.101822247717003 1.0033651077352204 0.19793643375787673 0.07329783843143411 0.4134022949302385 236.27235259678193 0.034357983058610896 0.018936696368640003 57.64283530674257 -1.760745334525515 -0.09845713998178263 DMSGHYQNALYLGDVSER ddPTM_BT-474_Trastuzumab_2h_R1 5 DMSGHYQNALYLGDVSER 18 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ;;;; 199.97 1.5645999999999996e-15 1755370000.0 1361808.0 1544790.0 1521200.0 1632010.0 1567890.0 1750390.0 1611870.0 1501429.0 2064260.0 1800740.0 False True 1354476.177039091 1596207.4013047242 1735371.7374925697 1838622.2986662467 1767551.497887889 1629389.6592748545 1533897.6901586396 1613473.25608198 1555550.7826668515 1685815.2315089232 0.8034547035304335 0.9468459956172102 1.0293961669448732 1.0906428322044228 1.04848471223374 0.9665292072467729 0.9098848209988548 0.9570878385277181 0.9227291067209804 1.0 20.68501499220367 -0.027751876465087102 7.791431581434471 0.9999999986370692 0.9684614415593709 0.016596996969812317 0.07641679609561178 10589132.071130507 1359073.867118397 0.07793533730836548 0.018902095711295187 0.938097813102994 0.027751876465087102 -0.03153855707769837 DMSLKDS(ph)GSDLSHRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMSLKDSGSDLSHRPK 16 2 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 DMSLKDS(0.5)GS(0.5)DLS(0.001)HRPK 130.56 2.5733e-05 195200000.0 317310.0 269320.0 242240.0 238720.0 269810.0 390380.0 370640.0 313520.0 534300.0 376970.0 True False 315601.6382164556 278284.153392622 276345.28641217446 268941.9275234867 304168.70421083795 363393.94945567416 352710.7272177029 336916.45442230155 402628.9242531951 352911.4518597453 0.8942799576305122 0.7885381784188125 0.7830442592778205 0.7620663090025486 0.8618839162287123 1.0297029114263336 0.9994312322794155 0.9546770235050335 1.140878036491739 1.0 18.428946720290355 2.8550700572522953 3.6418002804362932 1.0147155717233622 0.8044452670532883 0.7761458429847192 0.05592851021165932 0.1160714140446992 2.792571451389113 0.017741172076028752 0.018949089355800898 716.25894261889 -2.8550700572522953 -0.2102703046700739 DMSLKDSGS(ph)DLSHRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMSLKDSGSDLSHRPK 16 2 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 DMS(0.006)LKDS(0.38)GS(0.606)DLS(0.008)HRPK 57.41 0.061851 186360000.0 181270.0 189890.0 169100.0 178220.0 184130.0 240720.0 238650.0 213080.0 431620.0 247420.0 True False 180294.06246099022 196210.37385907106 192907.8101564514 200782.63372669148 207577.86407598542 224079.59299392847 227105.58776846752 228981.111598316 325253.0344116858 231629.44377308077 0.7783728161848801 0.84708735928793 0.8328293977402821 0.8668269044560293 0.8961635476677229 0.9674054789573789 0.9804694259463616 0.9885665132565822 1.4041955509349007 1.0 17.82145912882379 2.050358025567023 0.9296316751190684 1.158597052252471 0.8363608651402931 0.5725592602957625 0.10836369906082494 0.4126988596317474 0.6598114105307723 0.08467585345991517 0.042151174788341975 112.29438101096386 -2.050358025567023 -0.32223618711217783 DMSPLS(ph)ETEMALGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DMSPLSETEMALGK 14 0 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DMS(0.001)PLS(0.986)ET(0.013)EMALGK;DMS(0.023)PLS(0.782)ET(0.195)EMALGK 169.04 3.5608e-06 78799000.0 67266.0 59689.0 48436.1 51715.0 46454.0 59749.0 60576.0 58412.0 87378.0 65571.0 True False 66903.84732995517 61675.712282237546 55255.48186587164 58262.11369754162 52369.64154557012 55618.69226401731 57645.707457207944 62771.000050126 65844.8627052136 61386.2026418425 1.0898841181023258 1.0047162005130728 0.9001286850769948 0.9491076364093026 0.8531174643774683 0.9060454934559855 0.9390661903871387 1.0225587729601568 1.0726329349509551 1.0 15.905626806854645 1.6649459782403147 4.334283665312763 1.0392395956222764 0.9437748194406989 0.2661020772985645 0.06275521551172226 0.2216623265926566 9.655659004263468 0.03725497439086951 0.017499002040964804 46.23235095404093 -1.6649459782403147 -0.09546477618157756 DMSPLSETEMALGKDVT(ph)PPPETEVVLIK ddPTM_BT-474_Trastuzumab_2h_R1 9 DMSPLSETEMALGKDVTPPPETEVVLIK 28 1 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DMSPLSETEMALGKDVT(0.999)PPPETEVVLIK;DMSPLSETEMALGKDVT(0.997)PPPET(0.003)EVVLIK;DMSPLSETEMALGKDVT(0.977)PPPET(0.023)EVVLIK;DMSPLSETEMALGKDVT(0.999)PPPETEVVLIK;DMSPLSETEMALGKDVT(0.961)PPPET(0.039)EVVLIK;DMS(0.001)PLS(0.001)ET(0.001)EMALGKDVT(0.993)PPPET(0.004)EVVLIK;DMSPLSETEMALGKDVT(1)PPPETEVVLIK;DMSPLSET(0.001)EMALGKDVT(0.95)PPPET(0.049)EVVLIK;DMSPLSET(0.004)EMALGKDVT(0.978)PPPET(0.018)EVVLIK 194.67 1.2628e-18 2554626000.0 1869020.0 1667719.0 1617300.0 1559770.0 1595200.0 2238070.0 2337470.0 2060050.0 3516270.0 2265010.0 True False 1858957.4039876438 1723228.0187575754 1845001.7821763966 1757236.7220731792 1798339.264508837 2083357.488750094 2224397.6460974608 2213781.3917219387 2649732.3741040253 2120455.1226273784 0.876678494230181 0.8126689409122635 0.8700970666572383 0.828707338967802 0.8480911693526343 0.9825048719581869 1.0490189687868947 1.0440123764462994 1.2496054954564844 1.0 21.015942519342676 2.4171276857718857 1.4318634772622816 1.1017641978092447 0.84088249699971 0.7632300041742932 0.0629385070949471 0.18707576146398894 0.7738651898488123 0.03127149417878758 0.022059253267493247 261.29294619587705 -2.4171276857718857 -0.26088170080953477 DMTGLPHNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DMTGLPHNR 9 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 0 ; 119.75 0.00077709 598990000.0 622800.0 774440.0 690380.0 700510.0 664870.0 758350.0 697420.0 637700.0 834130.0 716740.0 False True 619446.9139995847 800216.7672411336 787579.503109466 789194.4941750916 749537.2535067638 705927.0494638836 663683.1301968766 685288.4121749871 628569.8382693568 670997.0395680139 0.9231738405260075 1.192578685229835 1.173745123550035 1.1761519762936257 1.1170500155847394 1.0520568763140261 0.989099937943324 1.0212987118634294 0.9367699128360214 1.0 19.35594687572074 2.5266781547923767 2.3147446710363075 0.9909778517602962 1.1280789038590897 0.40167070639907154 0.07391975658602928 0.2970836300142083 3.1865565572884327 0.0279573380977081 0.02417221894320005 336.2622811175133 -2.5266781547923767 0.13710105209879353 DMVTELFDPLVQGEVQHR ddPTM_BT-474_Trastuzumab_2h_R1 6 DMVTELFDPLVQGEVQHR 18 0 Q9BXV9 Q9BXV9 C14orf142 Uncharacterized protein C14orf142 0 ;;;;; 242.48 4.8426e-24 619539000.0 697710.0 785004.0 746191.0 776588.0 812503.0 786666.0 773955.0 714270.0 910038.0 771380.0 False True 693953.606882869 811132.3835950614 851248.2067915577 874903.9611746387 915970.4409674176 732285.6310325767 736515.8398547828 767572.4543895677 685771.3287844454 722149.8679883565 0.9609551114590218 1.1232189044838814 1.1787694556572055 1.2115268588385937 1.2683938356438031 1.014035539565291 1.0198933386312796 1.0628991133485102 0.9496246682073788 1.0 19.46193874557499 2.695458910579438 24.218662910406493 1.0181358046568867 1.152339338295819 0.43578907404221456 0.07886230221785533 342.2340273058365 192299.16724505398 0.02672385454192023 0.025195662160484834 495.97400013988346 -2.695458910579438 0.13420353363893223 DMVVNLFHELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DMVVNLFHELEK 12 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 124.45 0.00032283 124530000.0 186440.0 188710.0 166380.0 173630.0 157180.0 210300.0 213230.0 183240.0 288610.0 223820.0 False True 185436.22775543152 194991.0982723962 189804.85779911518 195611.54019731507 177195.94132115037 195762.45599295106 202915.25028229758 196914.29927386626 217485.9326758647 209535.6159780574 0.8849866734581792 0.9305868950356185 0.9058357783861984 0.933547928280601 0.845660249662312 0.934268167629561 0.9684045804582782 0.9397652917129236 1.0379425553059192 1.0 17.67683596240793 1.709470249722586 1.1064177882990187 1.0130309200337952 0.9049792477500629 0.6379831364720613 0.03139138365190868 0.3069810392551213 0.7044416352467477 0.026360212880416397 0.010277894798540702 51.223617958056316 -1.709470249722586 -0.10805167228373236 DNAGQVTLVPEEPEDMWHTYNLVQVGDSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNAGQVTLVPEEPEDMWHTYNLVQVGDSLR 30 0 Q9BRX2 Q9BRX2 PELO Protein pelota homolog 0 ; 282.19 1.2319999999999995e-71 215332000.0 148574.0 156079.0 145588.0 140851.0 168005.0 174089.0 156036.0 158676.0 182463.0 180581.0 False True 147774.0940921231 161273.99516325208 166085.52492641905 158682.7221582214 189399.44090634843 162054.6371914259 148487.94256459476 170517.20886040165 137497.4385289363 169056.16597682764 0.8741124184277215 0.9539669507550392 0.9824280822101704 0.9386390685091717 1.1203344155593191 0.9585845997101257 0.8783349705502481 1.0086423519374872 0.8133240082339436 1.0 17.36714311096958 -0.26371074298062197 6.971416023965976 1.0000001358736057 0.9549489360330117 0.030204784150506092 0.0798326373282188 0.0 0.0 0.0740055827973748 0.017443283147228747 0.544865433590472 0.26371074298062197 -0.045051199840594025 DNALLSAIEESR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNALLSAIEESR 12 0 H3BVG0;Q8N1F7;H3BM93;H3BNN5;H3BV11;H3BRI8 H3BVG0 NUP93 Nuclear pore complex protein Nup93 0 ; 138.2 0.00018281 73567000.0 69316.0 77780.0 70530.0 67461.0 69688.0 68754.0 70324.0 72217.0 86951.0 74977.0 False True 68942.8103577315 80368.86028099716 80460.0109422501 76001.55568306778 78562.35372686296 64001.19780950715 66922.1594562317 77606.19925049554 65523.09113370674 70191.90366896082 0.9822045956023605 1.144987613671698 1.1462862059093843 1.0827681215415734 1.119250933802549 0.9118031348935871 0.953417074593818 1.1056289286083767 0.9334850275998618 1.0 16.099017011072686 2.763146715726655 24.86211291299907 0.994844460377903 1.1000296952167143 0.42081691785363773 0.06586949661275443 793.6957645575054 802605.13255325 0.020729098980368885 0.021977174103988743 579.6244752518298 -2.763146715726655 0.10518523483881137 DNDFIYHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNDFIYHDR 9 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ; 122.42 0.00058627 759800000.0 719260.0 828160.0 721860.0 677470.0 710500.0 898650.0 862590.0 751980.0 995950.0 836560.0 False True 715387.584077299 855724.8049667091 823491.6134804025 763237.6325374353 800977.9635365657 836528.440694558 820863.2262862028 808096.5660770693 750511.4675462653 783170.0245849506 0.9134511812507461 1.0926424379178834 1.051485102378402 0.9745490871435245 1.0227382795467084 1.0681313309174278 1.04812901479628 1.0318277522244659 0.958299531374438 1.0 19.578966022051777 4.760399793080377 24.0598846872669 1.029766889405924 0.9134509787351781 0.4321841037075532 0.039153953568698635 3201.934404510675 3527427.090372937 0.009301603563137393 0.42596462146440506 57596.99068337212 -4.760399793080377 -0.11631591067074587 DNDFLNEGQK ddPTM_BT-474_Trastuzumab_2h_R1 3 DNDFLNEGQK 10 0 P78356;P78356-2 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ;; 175.65 6.3692e-06 419830000.0 718050.0 608910.0 501030.0 478380.0 502310.0 676430.0 647660.0 631520.0 961850.0 650220.0 False True 714184.0985828552 629177.2012561326 571570.6689691705 538942.8589505935 566276.2010753725 629669.9862449449 616330.2114985362 678647.2291935825 724814.9556296748 608722.4029186509 1.1732508860501034 1.0336028347887423 0.9389676907382605 0.8853672156084871 0.9302700185835762 1.0344123745501337 1.0124979934094884 1.1148714519782121 1.190715097973055 1.0 19.215424936991297 1.818441592701903 3.0821273712043844 1.115577673564492 0.9913649680343979 0.21723656572111194 0.08574405899829078 0.33960708656963007 5.854816551956074 0.0490179452879366 0.024755215752326046 65.83268870719948 -1.818441592701903 -0.12421270553009411 DNDFSYRPNMICNFLHENEDEEVVASAPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNDFSYRPNMICNFLHENEDEEVVASAPDK 30 1 Q969F1 Q969F1 GTF3C6 General transcription factor 3C polypeptide 6 0 114.61 8.414200000000001e-05 103300000.0 83316.0 90214.0 71660.0 74681.0 78072.0 104670.0 86364.0 76421.0 157980.0 99052.0 False True 82867.43591327778 93216.71845448541 81749.10512011417 84135.60694278455 88014.00643100176 97434.40926667718 82186.24337748127 82123.92307797495 119047.9458235443 92730.41655731642 0.893638128564403 1.0052442544229099 0.8815781073256073 0.9073140191361112 0.9491384779513046 1.0507276132686543 0.8862921836081926 0.8856201247323673 1.2838068698846088 1.0 16.500755015258555 1.2555997230648357 24.99970418453442 1.1419035225913192 0.9322040326816844 0.5046951367322539 0.0830003153957762 154.1132930425541 226116.06299539137 0.05222126249902689 0.018963081667425268 18.013567160034356 -1.2555997230648357 -0.20969948990963483 DNDGEFWMTLQDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNDGEFWMTLQDFK 14 0 A8MX76-2;A8MX76 A8MX76-2 CAPN14 Calpain-14 0 62.89100000000001 0.073433 269320000.0 124560.0 505540.0 461960.0 570010.0 550740.0 312250.0 347340.0 280980.0 92105.0 315050.0 False True 123889.382799917 522366.59329461696 526999.952571699 642173.2075555581 620873.4745082732 290664.892457437 330537.8372323461 301948.1543875296 69406.95689376844 294943.23927212483 0.42004483000070525 1.7710749857624757 1.7867843110160957 2.1772772589747915 2.1050608789694407 0.9854943384183135 1.1206828746034774 1.0237500446956906 0.23532309831903345 1.0 18.17007781433611 2.625929368700758 6.424538924073886 0.8981168258342784 1.6935984152189465 0.3712884505788645 0.5057161142701672 0.27396120096139376 13.783132925413767 0.1685595871515208 0.15856263217975164 422.5998793239141 -2.625929368700758 0.7954815893846681 DNDTLKDLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNDTLKDLLK 10 1 Q9H8Y8;Q9H8Y8-3 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 0 ; 113.61 0.0013365 569640000.0 985830.0 906360.0 799360.0 759550.0 744510.0 1057100.0 1139110.0 900210.0 1869270.0 980250.0 False True 980522.4008160098 936527.64469381 911902.9398383264 855708.9521215833 839318.9354435024 984025.1651457386 1084006.8974772207 967388.2413737575 1408613.4554347158 917689.6057657521 1.0684684610738593 1.0205276803940029 0.9936943102645288 0.9324601115074742 0.9146000239843028 1.0722853990752503 1.1812347995079313 1.0541562586039481 1.534956314841683 1.0 19.8076467414252 2.1484721801193625 1.4784703424830363 1.2123641092718622 0.9865699105955285 0.32228821225897686 0.138862674454821 0.48511160671587117 2.0355591684035246 0.08231230070806243 0.04483411178714648 140.75770594063044 -2.1484721801193625 -0.22579419867633377 DNDVLLHWAPVEEAGDSTQILFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNDVLLHWAPVEEAGDSTQILFSK 24 0 Q9HA65-2;Q9HA65;M0QXA2;Q9HA65-3;M0R2L2 Q9HA65-2;M0R2L2 TBC1D17 TBC1 domain family member 17 0 117.08 0.00076908 35702000.0 16194.0 29740.0 29458.0 35212.0 30713.0 27189.0 29137.0 23617.0 17851.0 26838.0 False True 16106.813303322537 30729.877921790354 33605.43034647392 39669.8355896323 34624.11849978678 25309.48842602165 27727.531995850943 25379.420464696053 13451.860241145016 25125.17586283221 0.6410627090236379 1.2230711573744328 1.3375202040351324 1.5788878774900863 1.3780647223650444 1.007335772063673 1.1035756385239242 1.0101191173049637 0.5353936750366955 1.0 14.616846073972278 1.7431095613280403 1.5223155852907084 0.7869327394176113 1.2301486549058733 0.27420138530121396 0.2599285981997578 0.4856419650711746 2.178642984501668 0.2076607096272575 0.08152541614281841 55.34897228262434 -1.7431095613280403 0.443215915488262 DNEEETTDDPRK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNEEETTDDPRK 12 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 ; 125.82 0.00047862 895600000.0 420990.0 358930.0 317370.0 280590.0 318410.0 417630.0 419550.0 395570.0 665740.0 409920.0 False True 418723.43661638617 370876.7680722329 362052.9373705084 316112.66523045924 358957.62613606936 388760.2210952745 399254.7636633584 425089.44206376 501677.29745895945 383758.5546498317 1.0911116678518316 0.9664325748012235 0.9434393917312694 0.8237279961586854 0.9353736139214083 1.013033367946694 1.040380100523535 1.1077002373318856 1.3072732617432465 1.0 18.549839385475533 1.985459834503427 1.665824976581813 1.156454433355808 0.9497093046076398 0.42007948356878 0.09341410657432972 0.3371324189875136 1.7436344155034365 0.059783933239962624 0.029040656391500677 96.70742831579453 -1.985459834503427 -0.2067451287481682 DNEEKDSAFR ddPTM_BT-474_Trastuzumab_2h_R1 4 DNEEKDSAFR 10 1 O14787-2;O14787;Q92973-2;Q92973;Q92973-3;S4R398 O14787-2;Q92973-2 TNPO2;TNPO1 Transportin-2;Transportin-1 0 ;;; 164.9 5.4868e-06 3303030000.0 3493880.0 2843750.0 2703260.0 2573400.0 2556230.0 3425760.0 3605540.0 3155790.0 5314900.0 3480430.0 False True 3475069.3382865647 2938402.4996668235 3083855.510842863 2899192.1761433505 2881750.7385377553 3188945.2745716274 3431126.255699644 3391291.0745769166 4005114.111011237 3258305.977653963 1.0665263981096935 0.9018190801658611 0.9464597652867741 0.8897851202516037 0.8844322044342398 0.9787126489783269 1.0530399168251579 1.0408141831476199 1.2292013514013158 1.0 21.635690658674577 2.1232837108005893 1.725804106167167 1.0979229129272554 0.9336498701254149 0.46343669826320844 0.07321091772465087 0.3105110185903753 1.781541694026814 0.040650005402347894 0.022603523327319602 132.82618856984158 -2.1232837108005893 -0.16427304280184052 DNEGSWFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNEGSWFR 8 0 Q9BPW8;H7C2U6;F8WCR5 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 0 104.2 0.016233 0.0 110390.0 160920.0 166560.0 144830.0 148860.0 203540.0 164990.0 123180.0 170150.0 186900.0 False True 109795.67250548194 166276.12492180595 190010.20023452688 163165.46315024554 167816.43863765383 189469.75888162275 157008.80337699308 132372.3170953661 128218.81239318932 174971.88198685972 0.6275046667997063 0.9503019744297726 1.0859470566179115 0.9325239078270826 0.9591051815414361 1.0828583240354688 0.8973373412579762 0.7565347962897672 0.732796669597567 1.0 17.416763573766406 -0.8707210022594477 4.713290219795229 1.0000003481872486 0.8978558121351079 0.04916730443604844 0.14057537779219417 18754961.031627733 3979165.9020902608 93.76135961631434 0.03441852981641767 0.13467252341094707 0.8707210022594477 -0.10214453605214069 DNFFEVFTPVFER ddPTM_BT-474_Trastuzumab_2h_R1 4 DNFFEVFTPVFER 13 0 Q99543;Q99543-2;H7C3L7;C9IZ83 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 0 ;;; 203.61 1.9653e-07 416072000.0 410902.0 491298.0 431573.0 474411.0 411511.0 487091.0 480922.0 438745.0 563545.0 490290.0 False True 408689.74928750424 507650.5569340871 492334.7271002372 534471.3839575449 463914.4866332092 453419.54565888015 457657.9655595511 471486.3798019679 424666.88586611766 458999.27244161244 0.8903930220052628 1.105994251872509 1.0726263779924952 1.164427518837806 1.0107085446245931 0.9878437132306302 0.9970777581521505 1.0272050700514865 0.9252016536042286 1.0 18.80813234126607 3.0205412526526376 24.88859510159862 0.9937082799407057 1.0658800227229441 0.18360966027274328 0.06932711314379428 368.1369123235195 446045.78016798856 0.019628739426031598 0.023458598497704004 1048.4343772665025 -3.0205412526526376 0.07217174278223848 DNFGFIETANHDK ddPTM_BT-474_Trastuzumab_2h_R1 5 DNFGFIETANHDK 13 0 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;;; 223.7 1.5349000000000002e-11 4586030000.0 2973720.0 2739320.0 2559240.0 2269930.0 2309540.0 3114490.0 3161080.0 2894830.0 3694920.0 2854100.0 False True 2957709.821931355 2830496.6102460898 2919558.746687148 2557302.905258834 2603646.2292839373 2899192.6370208603 3008166.4839017224 3110856.914248891 2784356.475391379 2671948.8944820557 1.1069485004145982 1.0593378548861683 1.0926701302994384 0.9570927462497574 0.9744371363766826 1.085047937484169 1.1258323428692827 1.1642651252324627 1.0420695100649044 1.0 21.349460983430152 2.4933143355871703 23.487568614524267 1.1050600252253457 1.0370022371618015 0.07814601630790152 0.061426654972440625 524.4187771331337 760655.0773393901 0.020883884964963392 0.019165506483591943 311.39693642184693 -2.4933143355871703 -0.06805778806354423 DNFHGLAIFLDTYPNDETTER ddPTM_BT-474_Trastuzumab_2h_R1 5 DNFHGLAIFLDTYPNDETTER 21 0 Q12907;D6RBV2;D6RIU4 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 0 ;;;; 229.2 1.3872e-25 1070702000.0 874670.0 1100710.0 1109340.0 897892.0 938078.0 1006311.0 1002420.0 828299.0 1227990.0 967827.0 False True 869960.8739049732 1137346.4669567551 1265525.4294438667 1011565.0351370596 1057536.6728760777 936747.0891712927 953929.1149837284 890110.8773970975 925368.3187229652 906059.4522616187 0.9601587089384259 1.255266929910416 1.3967355301961517 1.1164444370753905 1.1671824296257338 1.033869341391533 1.052832805399935 0.9823978715472679 1.0213108162087483 1.0 19.789246192113335 2.787606380183241 1.6058364589081104 1.007690271092846 1.2047128364408712 0.37152014222578755 0.10430252661179777 0.3870962245160229 2.0015774526475947 0.041538659226113 0.04182218346386769 613.205978206305 -2.787606380183241 0.1970225653480253 DNFLEWR ddPTM_BT-474_Trastuzumab_2h_R1 3 DNFLEWR 7 0 Q9H089;F8WFC6 Q9H089 LSG1 Large subunit GTPase 1 homolog 0 ;; 110.12 0.015994 383820000.0 630530.0 773730.0 710530.0 735920.0 743900.0 773880.0 722400.0 744700.0 887970.0 751760.0 False True 627135.2965384686 799483.1353203383 810566.447962528 829087.3965444216 838631.2555592556 720383.497117571 687454.752164009 800273.2955099773 669141.6916883948 703782.0331858828 0.8910930756495025 1.1359811669264068 1.1517293845841063 1.1780456980285585 1.1916065145382255 1.023588928317105 0.9768006566635931 1.1371039011713577 0.9507797302800157 1.0 19.424769158509488 2.7017120839241646 24.243227832599153 1.0318211058922901 1.117284676248144 0.19201642709532107 0.09147352239547195 738.3987007319599 485803.0381654526 0.029999781616823866 0.02828510290233989 503.1669230436716 -2.7017120839241646 0.08546357035585395 DNFWEMGDTGPCGPCSEIHYDR ddPTM_BT-474_Trastuzumab_2h_R1 12 DNFWEMGDTGPCGPCSEIHYDR 22 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;;;;;;;; 258.9 3.3904e-37 17576520000.0 2207170.0 2454992.0 2179825.0 2303434.0 2282850.0 2437860.0 2331243.0 2237597.0 2919307.0 2468313.0 False True 2195286.841959641 2536704.9246459985 2486725.412621444 2595048.508223593 2573557.41598796 2269336.4763051625 2218471.869876911 2404577.850427336 2199882.906559651 2310783.1511109215 0.9500185428062538 1.0977684874612592 1.0761396678117277 1.1230168901724982 1.1137165401049027 0.9820637973814924 0.9600519498380315 1.0405900048523906 0.9520075068498077 1.0 21.139950449858603 2.726703204617053 24.763211041094838 0.9914273682488886 1.0766058572317734 0.4166600866823411 0.050119941125127514 664.3887135997564 1387516.7289638743 0.01618268008982801 0.015366324437161414 532.9705407339319 -2.726703204617053 0.08517848898288483 DNHLLGTFDLTGIPPAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNHLLGTFDLTGIPPAPR 18 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 120.71 3.9779e-05 1753920000.0 604310.0 903710.0 765760.0 773550.0 889620.0 899960.0 838100.0 201619.0 913750.0 520500.0 False True 601056.4621051524 933789.4410457693 873572.3518947602 871481.3506861312 1002907.8338091457 837747.8834779672 797557.9011470868 216664.83358053752 688568.5561226958 487281.2443775309 1.2334898357784359 1.9163254318122231 1.792747744704786 1.7884565858868426 2.0581704003204417 1.719228665466355 1.6367506657595934 0.4446402074377238 1.4130824119904224 1.0 18.89439516820803 1.8873289701182987 6.8981524666421485 0.9136259360704331 1.7680159215623514 0.5961763777094382 0.29553968896216926 0.14959604231577678 8.111959956515514 0.12152311128672341 0.07489443317119629 77.14876355471148 -1.8873289701182987 0.8543899854919184 DNHVVAAGGVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DNHVVAAGGVEK 12 0 Q15274 Q15274 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] 0 ;;; 137.8 8.5825e-05 1666680000.0 2281490.0 2306620.0 1980790.0 2042630.0 2084590.0 2680410.0 2485590.0 338670.0 2832940.0 1754540.0 False True 2269206.7113373675 2383394.4523187643 2259668.0146646765 2301226.7485644286 2350050.180167048 2495119.565706452 2365352.5158241144 363943.27513141406 2134799.896451144 1642563.755062732 1.3815029732290076 1.4510209694890892 1.3756957729646095 1.400996911974684 1.4307208307279957 1.519039707296573 1.4400369596209543 0.22157025808566835 1.2996755163208948 1.0 20.647517938244842 1.7761049706848673 24.999999999097817 0.7616340642886323 1.4297893540825966 0.5201767803399349 0.25545740934940303 29.214252901444535 19461.207543240107 0.10910372212648484 0.06056847808212889 59.71796098024888 -1.7761049706848673 0.6681552897939642 DNIACVILTFKEPFGTEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNIACVILTFKEPFGTEGR 19 1 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 159.77 2.9874000000000005e-11 449130000.0 427120.0 505040.0 508400.0 473480.0 568090.0 634120.0 683100.0 624810.0 803090.0 575260.0 False True 424820.4333774936 521849.95109687303 579978.3009079818 533422.5194530017 640432.8941667661 590284.776957918 650055.8433045876 671436.4949208926 605179.2303546658 538546.4142951359 0.788827893197488 0.9689971695009507 1.076932805628412 0.9904856950002341 1.1891879272931043 1.0960703874159086 1.2070563020188303 1.246756968570085 1.1237271557118076 1.0 19.038711162359146 5.59626019332982 0.5681843687755476 1.1671660096102665 1.6477086850318575e-13 0.647744019963583 0.07700000154236288 5.127789358486611 0.6076860609100238 0.03577991127198444 4.885009789619406 394693.699069867 -5.59626019332982 -1.1671660096101018 DNIPALVEEYLER ddPTM_BT-474_Trastuzumab_2h_R1 4 DNIPALVEEYLER 13 0 Q9H1I8;B1AH59 Q9H1I8 ASCC2 Activating signal cointegrator 1 complex subunit 2 0 ;;; 121.04 0.00058456 65042900.0 57001.3 61897.9 57185.8 54870.2 50742.1 58273.1 58932.7 55239.3 62336.0 56808.7 False True 56694.41133423978 63958.13418342929 65237.063572115854 61816.76169403161 57203.80566301015 54244.81775712244 56081.90015622355 59361.53706548181 46974.12805960535 53183.12012962498 1.066022662755713 1.2026021419492128 1.2266497981523348 1.1623380039261249 1.0756007831730334 1.0199630564154518 1.0545056405027249 1.1161725171595418 0.8832525798620643 1.0 15.698680798781343 3.141349152349829 3.0786254800289856 1.0336737985296822 1.173017755172388 0.5065987266302792 0.06817472800608758 0.22543842298609518 4.283743192720934 0.020798541638116032 0.025960212689182045 1384.6791485544666 -3.141349152349829 0.1393439566427057 DNIQGITKPAIR ddPTM_BT-474_Trastuzumab_2h_R1 4 DNIQGITKPAIR 12 1 P62805 P62805 HIST1H4A Histone H4 0 ;;; 187.97 8.9393e-06 10913850000.0 7178690.0 7302200.0 6675100.0 6417250.0 6702210.0 8145720.0 7539020.0 6981860.0 12266900.0 7820280.0 False True 7140040.730667443 7545249.312726891 7614896.058990699 7229673.192024527 7555696.716389024 7582625.54936235 7174328.800746823 7502881.846366719 9243886.86303858 7321183.035121454 0.9752577823030748 1.0306052008986168 1.040118246253404 0.9875006754157173 1.0320322112071987 1.035710419065702 0.9799411879650958 1.0248182309298393 1.2626220132311212 1.0 22.80364536277848 1.4376553665775682 24.97014058377746 1.1354477499246103 1.013380184428182 0.3611671430302179 0.06294345227939724 39.63145304106094 25077.53480367789 0.03072427080510477 0.013913875592187264 27.39399464808321 -1.4376553665775682 -0.12206756549642828 DNKDCTVDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNKDCTVDKR 10 2 A0A0G2JKR7;P28702;P28702-3 A0A0G2JKR7 RXRB Retinoic acid receptor RXR-beta 0 83.397 0.0087917 26038000.0 55533.0 59529.0 52461.0 57588.0 45010.0 57151.0 66493.0 59446.0 116960.0 72871.0 False True 55234.01649829634 61510.38677895958 59847.05280081365 64878.634895369316 50741.75670482871 53200.28588898315 63276.47956207288 63882.16238067156 88136.77518370518 68220.31039199811 0.8096418233942103 0.9016433145131869 0.8772615143045934 0.951016413185057 0.7437925218056536 0.779830604453293 0.9275313934879851 0.9364097292082184 1.2919433329644183 1.0 16.0579136985579 1.4449028278316527 3.864327527240359 1.145327585673135 0.8581740598880292 0.605632624278279 0.09122737174055275 0.1331514116972317 3.6774112475025795 0.06258437655765343 0.022632010723904607 27.854978515929425 -1.4449028278316527 -0.2871535257851059 DNKPLVER ddPTM_BT-474_Trastuzumab_2h_R1 5 DNKPLVER 8 1 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 ;;;; 113.1 0.002658 2459620000.0 1734150.0 1773760.0 1585370.0 1648040.0 1589800.0 1860270.0 1739910.0 1680800.0 2290290.0 1739160.0 False True 1724813.5290821763 1832798.5293394371 1808576.3157169314 1856681.695022651 1792251.6065171456 1731673.9135045537 1655743.9061983407 1806229.8309294605 1725878.7178136802 1628165.3198302116 1.0593601940017021 1.1256833117723974 1.1108063129028773 1.140352071383187 1.1007798684128989 1.0635737614686058 1.0169384435549855 1.109365129529855 1.0600144203990651 1.0 20.634815764008273 2.7674463774868365 4.143346557654559 1.0578979928593055 1.111188958442479 0.40960057531855576 0.033867153214578345 0.2425369866795851 9.686348810817007 0.010740697403860754 0.01101660775478889 585.3914533416809 -2.7674463774868365 0.05329096558317348 DNLEFFLAGIGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DNLEFFLAGIGR 12 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;; 151.79 0.00015031 5132567000.0 1365615.0 1594101.0 1523718.0 1347540.0 1404605.0 1549097.0 1677794.0 1455026.0 1901119.0 1570325.0 False True 1358262.680574091 1647159.6881305953 1738244.2500057232 1518138.425833613 1583473.1210039062 1442011.570572101 1596632.694424505 1563607.428592319 1432613.6961394509 1470105.5140771281 0.9239219005492626 1.1204363716468437 1.1823942114093229 1.0326731049550806 1.0771152858357556 0.9808898455001964 1.0860667340784758 1.0636021793128825 0.9744971924949121 1.0 20.487488274843546 DNLEWLAR ddPTM_BT-474_Trastuzumab_2h_R1 7 DNLEWLAR 8 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;;;;;; 185.55 0.0004936 3527470000.0 2827398.0 3129924.0 2963080.0 3001269.0 2925074.0 3270810.0 3148813.0 2880604.0 3658697.0 3115294.0 False True 2812175.603321449 3234101.628260984 3380255.908446943 3381229.3476729607 3297564.835628082 3044706.603358554 2996492.885556214 3095569.297890722 2757060.1483780476 2916473.2697826247 0.9642384288099615 1.1089083729205698 1.1590217347333636 1.1593555074567772 1.1306686297433 1.0439686298189481 1.0274371161233216 1.0614084243334916 0.9453404483228955 1.0 21.47579342087041 2.5835468833039905 3.8849514560421605 1.0205023797763004 1.1105155262146653 0.3660403218888212 0.05867160784200192 0.2858569682940898 7.6639653660033265 0.02057774187648553 0.019041393446814995 383.3071172419913 -2.5835468833039905 0.09001314643836489 DNLGEVPLT(ph)PTEEASLPLAVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNLGEVPLTPTEEASLPLAVTK 22 0 A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H0Y764;H7C3Y7 A0A494C1V1 NBEAL2 Neurobeachin-like protein 2 1 DNLGEVPLT(0.498)PT(0.498)EEAS(0.003)LPLAVTK 75.646 0.043282 23042000.0 87195.0 86264.0 81205.0 66690.0 75319.0 98957.0 79594.0 63293.0 85254.0 77253.0 True False 86725.55180827518 89135.24509231091 92637.95815348675 75132.94716212021 84910.42819931102 92116.33550972167 75743.73414139282 68016.24505534186 64244.294045071845 72322.6474003791 1.1991479145966744 1.2324665688585357 1.2808983283015323 1.0388578109728652 1.1740503321075322 1.2736858898397962 1.0473031182345214 0.940455687121118 0.8883011940839861 1.0 16.142159868716988 2.012479754797767 3.657744682236473 0.9433432472283287 1.1962297770959858 0.7413669598869452 0.06860342015608553 0.11815669937702288 3.353235458058441 0.031705104284770594 0.01994735145619789 102.91525507912502 -2.012479754797767 0.25288652986765703 DNLHQIDAVEGPAAFLDILAPPYDPDDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNLHQIDAVEGPAAFLDILAPPYDPDDGR 29 0 Q96SZ5 Q96SZ5 ADO 2-aminoethanethiol dioxygenase 0 ; 117.73 0.00012 168217000.0 52078.0 56387.0 48390.0 49384.0 47976.0 54359.0 54703.0 52042.0 56392.0 58953.0 False True 51797.61783440974 58263.807208338694 55202.89138657996 55636.00933654443 54085.45922396935 50601.29027732211 52056.80690424665 55925.6383039214 42494.94721408603 55190.56906779743 0.938522988787818 1.055684117639121 1.0002232685582095 1.0080709490094188 0.9799764731095537 0.9168466847145978 0.9432192453079948 1.0133187471798124 0.7699675493812034 1.0 15.752134140727847 2.9486858460865832 4.0989034339581805 0.9378755364788693 1.0039223146450642 0.20037585896799448 0.06726081926647146 0.39166152488231354 13.639275233535042 0.020184315091975442 0.02226682936828733 888.5581324822112 -2.9486858460865832 0.06604677816619486 DNLLFGDEIITNGFHSCES(ph)DEEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DNLLFGDEIITNGFHSCESDEEDR 24 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 DNLLFGDEIITNGFHSCES(1)DEEDR;DNLLFGDEIITNGFHSCES(1)DEEDR;DNLLFGDEIITNGFHSCES(1)DEEDR;DNLLFGDEIITNGFHSCES(1)DEEDR 250.43 1.0255999999999999e-38 353141000.0 215011.0 248460.0 209180.0 210316.0 238490.0 236641.0 237630.0 216135.0 230205.0 246512.0 True False 213853.4046659678 256729.84090275835 238630.72577484627 236941.98403581482 268860.28785902215 220282.56466299543 226134.92906524552 232264.0912112919 173474.06233896065 230779.39311045854 0.9266572798534511 1.1124469886264026 1.0340209433717933 1.0267033847446105 1.1650099440652262 0.9545157463758518 0.9798748753837392 1.006433408463479 0.7516878348663059 1.0 17.816154882195683 1.3963964037675758 7.802208112386473 0.8742740275379891 1.0298151713814918 0.32644715547933656 0.0865109810152901 0.2529569392456654 20.434343205599703 0.054481379476912506 0.02010961986061289 24.911300683491607 -1.3963964037675758 0.1555411438435027 DNLLNAWR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNLLNAWR 8 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YNI7;Q04724;Q04727-4;Q04727;Q04727-3;Q04727-2;K7EMK7;Q04725;Q04725-2 H0YKT5;Q04724;Q04727-4;K7EMK7 TLE3;TLE1;TLE4;TLE2 Transducin-like enhancer protein 3;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4;Transducin-like enhancer protein 2 0 113.26 0.006708700000000001 85230000.0 80346.0 85256.0 100370.0 78416.0 64148.0 103460.0 100370.0 69563.0 116790.0 90162.0 False True 79913.42606327983 88093.6944216597 114501.22356832064 88343.45755982648 72316.86756501555 96308.05371864344 95514.71964936548 74754.1442937566 88008.66940582175 84407.7839684283 0.9467542246242416 1.0436678974371614 1.3565244600089066 1.0466269034248106 0.8567559076312772 1.1409854540745472 1.1315866281371822 0.8856309309307004 1.0426605849377626 1.0 16.365088427946738 3.48804724627731 24.97219546276459 1.0053618331880503 1.1239715790187603 0.11905848781798689 0.1281019656509983 1013.4787230005035 2316381.6363872048 0.03557231653342067 0.05152778161228209 3076.4314771295494 -3.48804724627731 0.11860974583071004 DNLSYIEHIFEISR ddPTM_BT-474_Trastuzumab_2h_R1 6 DNLSYIEHIFEISR 14 0 Q15121-2;Q15121 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 ;;;;; 243.04 1.6344e-17 1524077000.0 1171876.0 1346609.0 1246747.0 1220122.0 1220938.0 1407699.0 1315074.0 1201005.0 1553383.0 1330718.0 False True 1165566.7498236645 1391430.0665226693 1422278.1406808118 1374589.3200980725 1376417.217233507 1310388.0814970108 1251458.846549464 1290630.0916798166 1170572.5739157794 1245790.4379550023 0.935604186958581 1.1169053992794633 1.1416672478362562 1.1033872778430511 1.1048545367653744 1.0518527366834243 1.004550049849288 1.0359929345728642 0.9396223780921813 1.0 20.248629973520448 2.219038352597815 1.5117311559040836 0.9919310397488721 1.0872376347016055 0.3292842817053352 0.05694275049473768 0.4755022456110164 2.1292031994820766 0.032965320628689836 0.019340780766223628 165.59161911703023 -2.219038352597815 0.09530659495273341 DNLTLWTSDQQDDDGGEGNN ddPTM_BT-474_Trastuzumab_2h_R1 6 DNLTLWTSDQQDDDGGEGNN 20 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ;;;;; 500.39 7.560099999999991e-276 5302450000.0 5983540.0 6192210.0 5947810.0 6004010.0 6106400.0 6920050.0 6868270.0 6254630.0 7066780.0 6977740.0 False True 5951325.285473797 6398313.966580005 6785209.948708709 6764117.050394988 6884013.844531566 6441683.23154551 6536025.54076066 6721382.250967603 5325266.759000545 6532414.659256234 0.9110452406815523 0.979471497191898 1.0386985980894938 1.0354696392107379 1.053823770170059 0.9861105835371059 1.0005527636705225 1.0289276785948682 0.8152064798052591 1.0 22.639184941342176 1.2694131837209364 24.999941032315437 0.9076028919395455 1.0075029611441462 0.31698088238626365 0.056595128768098385 184.11241021671404 149187.10619570513 0.03595991650780119 0.013127567990366781 18.5957279398621 -1.2694131837209364 0.0999000692046007 DNLTLWTSENQGDEGDAGEGEN ddPTM_BT-474_Trastuzumab_2h_R1 15 DNLTLWTSENQGDEGDAGEGEN 22 0 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;;;;;;;;;;;; 349.54 1.2713999999999995e-95 13170148000.0 15700463.0 16755755.0 15882529.0 16335122.0 16243498.0 17951432.0 17456900.0 15863164.0 19212110.0 18062641.0 False True 15615933.451693436 17313460.17610722 18118651.029783167 18403146.770322215 18312011.187544364 16710491.758965567 16612443.055165945 17046953.84919464 14477542.919584576 16909867.787175022 0.9234805173070042 1.023867270519897 1.0714838967295135 1.0883081406632724 1.0829186495137928 0.9882094862763701 0.9824111734194247 1.0081068677617684 0.856159439079991 1.0 24.01136204403438 1.9188863631825905 1.3205954860137712 0.9442776979042632 1.0380974909795082 0.26768747429279127 0.05888587794333328 0.588844948759118 1.9047187066542264 0.04491318174668678 0.019773175531500466 82.96336584611298 -1.9188863631825905 0.09381979307524502 DNNLLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DNNLLGK 7 0 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PS65;E9PM13;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;; 109.01 0.016572999999999997 1096950000.0 1261630.0 1164920.0 1089520.0 1021100.0 891150.0 1101250.0 1023190.0 1005600.0 1424580.0 1170400.0 False True 1254837.5242602692 1203693.6579909897 1242914.9457223928 1150371.1553042596 1004632.6702401261 1025123.1795636578 973694.3907346252 1080642.9783333326 1073511.3473940033 1095704.0699701465 1.1452339720655218 1.0985572573658373 1.1343527689518003 1.0498921988448966 0.9168832148880293 0.9355839844526527 0.888647233701664 0.9862544166353017 0.9797456966854674 1.0 20.063426774159733 3.444724060517017 3.5599385839867996 0.9482811987433732 1.1214060019894727 0.8446937690501168 0.033803613658598915 0.08452846042694406 2.2630798633181395 0.009810072523219748 0.01428738021676637 2784.3515015479643 -3.444724060517017 0.17312480324609947 DNNLLGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DNNLLGR 7 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931;P17066 A0A0G2JIW1;Q53FA3;P17066 HSPA1B;HSPA1A;HSPA1L;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6 0 ;; 155.51 0.0037367 5780100000.0 1966200.0 2237620.0 2063900.0 2081450.0 2063970.0 2210790.0 2232240.0 2069810.0 2708180.0 2288850.0 False True 1955614.197665358 2312097.8290301464 2354479.180259608 2344961.356584123 2326804.3453913657 2057963.290939881 2124258.0232150992 2224269.732482216 2040785.3267527907 2142773.6334169265 0.9126555260748104 1.0790210374873854 1.0987997721929639 1.0943579480417547 1.0858843459264425 0.9604202977139472 0.9913590451585398 1.0380329950837286 0.952403602007412 1.0 21.03104801840706 2.7433123874622862 24.973411851308903 0.9949316040852165 1.0602408139466069 0.25519700442896087 0.0550802342859247 571.3315252064247 3002693.8485889337 0.01730414163504227 0.017849056715719583 553.7482764210432 -2.7433123874622862 0.06530920986139033 DNPEAAVHIFEGTHENPELIWNDNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNPEAAVHIFEGTHENPELIWNDNSR 26 0 O75165 O75165 DNAJC13 DnaJ homolog subfamily C member 13 0 ; 200.99 2.9659e-25 349800000.0 343315.0 248293.0 220780.0 202013.0 211139.0 338785.0 350561.0 651912.0 395596.0 709859.0 False True 341466.6301858819 256557.282408712 251863.9049458385 227587.82508714026 238026.30013110055 315365.590364108 333603.02515693166 700560.9837820609 298106.6665148168 664555.1908791342 0.5138273462797855 0.3860586538633678 0.3789962194300972 0.3424664019042065 0.35817386335695856 0.47455139120486534 0.501994461461675 1.0541802899098491 0.4485807508635274 1.0 19.342029493804617 1.9171640547335802 6.342966529425263 0.8304852006080019 0.4079152534281993 0.5937734556413969 0.157687589336621 0.153266569901778 9.571256724248432 0.06449255036547753 0.03955680809851038 82.6350044342581 -1.9171640547335802 -0.4225699471798026 DNPGVVTCLDEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DNPGVVTCLDEAR 13 0 P22314;P22314-2;Q5JRR9;Q5JRS0 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 305.06 5.758999999999999e-41 1729420000.0 761800.0 820030.0 715300.0 743270.0 711950.0 810810.0 741990.0 770440.0 1014260.0 859010.0 False True 757698.5534439376 847324.2028313974 816008.0225009441 837367.9057908092 802612.6124417417 754760.6131414387 706097.109022942 827934.1450150493 764309.2133876941 804187.2463645379 0.9421917058113516 1.053640438420116 1.0146990345716673 1.0412598677438245 0.998041956111696 0.9385384020369131 0.8780257486238079 1.0295290664678696 0.9504120052175422 1.0 19.617171931002176 2.9354625797093203 5.593311154295426 0.9603669649816268 1.016474107501266 0.23512224722365527 0.046084560244412875 0.3134214606435889 19.36645330205118 0.014146177363557631 0.015231486352807314 861.9113102941895 -2.9354625797093203 0.05610714251963922 DNPIEDELVFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNPIEDELVFR 11 0 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 0 ; 174.4 3.9071e-05 36749000.0 139777.0 154321.0 129489.0 119253.0 135117.0 138596.0 133275.0 131333.0 165702.0 142142.0 False True 139024.45616268445 159457.48119598546 147719.92566143532 134350.4175727144 152323.34904879655 129015.18473989109 126827.97909005843 141133.73535546093 124866.96239304304 133070.37586611116 1.0447438451858284 1.1982943623487146 1.1100887383835438 1.0096192837682456 1.1446826392228484 0.9695259662428533 0.953089508198778 1.060594699886192 0.9383528195537526 1.0 17.021829908587197 2.731998166800291 24.817688240637633 0.9914338852165214 1.1022382779977526 0.5110193134980263 0.057094887216716725 423.5898772125243 1601916.041212709 0.018320772881835378 0.017640206316147166 539.5083451925502 -2.731998166800291 0.11080439278123122 DNPSIFVHSPHALMLQDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNPSIFVHSPHALMLQDVK 19 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 153.82 2.4255e-08 432660000.0 180890.0 182740.0 201650.0 193510.0 191570.0 241680.0 245570.0 148510.0 294560.0 217500.0 False True 179916.10833876816 188822.39043133738 230040.56722677947 218008.34615897288 215965.30397565046 224973.23045352544 233690.8409315003 159592.57031849955 221969.63490178002 203618.96378888158 0.8835921025770013 0.927332046670831 1.1297600328881579 1.0706681838584085 1.060634530090085 1.1048736633724578 1.1476870158999444 0.7837804856131674 1.0901226033736473 1.0 17.6355124056447 -0.7063051986775659 7.137147070633925 1.000000005545434 1.0158221647803458 0.000690978846273782 0.11313521398920466 0.0 0.0 0.11409108195305243 0.026891525907304505 0.19665038514434938 0.7063051986775659 0.015822159234911926 DNQESS(ph)DAELSSSEYIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DNQESSDAELSSSEYIK 17 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 DNQES(0.005)S(0.995)DAELSSSEYIK;DNQES(0.007)S(0.993)DAELSSSEYIK;DNQES(0.203)S(0.797)DAELSSSEYIK;DNQES(0.015)S(0.985)DAELSSSEYIK 347.24 1.5200999999999992e-87 1065610000.0 2170790.0 1738340.0 1594140.0 1548450.0 1651790.0 2220180.0 2050990.0 2021930.0 2949480.0 2153020.0 True False 2159102.70783744 1796199.5960512813 1818581.0554867254 1744483.611233846 1862135.6655736277 2066704.1823415635 1951775.7781573401 2172816.6837525032 2222620.1750071337 2015612.4203068384 1.07118942415961 0.8911433457915706 0.9022473949678685 0.8654856428044246 0.9238560185544765 1.0253480091311142 0.96832891010873 1.0779932996353205 1.1027021626850178 1.0 20.942786820732508 2.2979365609092772 1.3895293861583429 1.0614821850153728 0.9250880310827423 0.40395243319212626 0.06257500874950828 0.38598784049703394 1.4750486643191907 0.035806554708746864 0.02220940591066512 198.58048219060677 -2.2979365609092772 -0.13639415393263055 DNQHQGSYSEGAQMNGIQPEEIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DNQHQGSYSEGAQMNGIQPEEIGR 24 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;; 304.49 1.6075999999999994e-62 1512870000.0 397960.0 483580.0 489040.0 459420.0 470460.0 523100.0 517510.0 413960.0 500000.0 507970.0 False True 395817.4275775128 499675.66796971683 557892.5811881194 517582.5248946065 530370.2923651128 486939.32824494905 492476.06421981746 444851.7972462876 376781.69965674216 475550.9197050027 0.8323344802341025 1.0507301053684837 1.1731500415017502 1.0883850781230267 1.115275505500265 1.0239478215014512 1.0355906041046328 0.9354451412316506 0.7923056901886978 1.0 18.859240300638934 1.6740063269487098 3.091507827653017 0.8877780519159094 1.0557778697576248 0.2997012206576686 0.09566663185967078 0.23786289621878337 5.261269705697415 0.058745700582637006 0.02587485475120338 47.20699184875254 -1.6740063269487098 0.16799981784171536 DNQVVQLHPSTVLDHKPEWVLYNEFVLTTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNQVVQLHPSTVLDHKPEWVLYNEFVLTTK 30 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 97.399 0.00042386 1400050000.0 451130.0 530120.0 577070.0 574370.0 613630.0 750560.0 712050.0 634040.0 850990.0 724110.0 False True 448701.16620525444 547764.723735693 658316.4400176425 647085.1831085177 691772.1432300378 698675.5538281958 677605.4212048484 681355.2843898839 641274.9171817823 677896.6798582387 0.6619019970699467 0.8080357081115094 0.9711161886134465 0.9545483881759618 1.020468404380887 1.030651977782665 0.9995703494912365 1.0051019641110626 0.9459773682855112 1.0 19.370705879339948 4.531987857495334 1.5050221966790613 0.9993069676287764 0.5969910057994041 0.9474080750548584 0.025335212283560928 0.14647866323302403 0.4161364157866473 0.006890291647998822 0.07830172124270456 34039.86723103336 -4.531987857495334 -0.40231596182937224 DNS(ph)PEPNDPEEPQEVSSTPSDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNSPEPNDPEEPQEVSSTPSDKK 23 1 Q9HB58;Q9HB58-6;G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7 Q9HB58 SP110 Sp110 nuclear body protein 1 DNS(1)PEPNDPEEPQEVSSTPSDKK;DNS(1)PEPNDPEEPQEVSSTPSDKK 130.62 3.4889e-08 0.0 428500.0 267450.0 210585.0 207724.0 230396.0 372820.0 350080.0 325290.0 569090.0 335290.0 True False 426193.00361082563 276351.91157306085 240233.53756236707 234021.83710157863 259735.56493591898 347047.83092388057 333145.29296452977 349564.791589151 428845.3949153106 313891.5051437891 1.3577717033648071 0.8804058314558977 0.765339404302514 0.7455500810522943 0.8274692391466214 1.1056298919746268 1.0613389897631056 1.1136484608878487 1.366221729125364 1.0 18.259906460181426 2.6638126057096305 5.844264041473159 1.1309700029008345 0.895945539255504 0.25153786329546846 0.1832876930539363 0.3164207334453531 19.112984916793845 0.06114617194641833 0.05770433082867749 461.1185629796129 -2.6638126057096305 -0.23502446364533047 DNS(ph)PPPAFKPEPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNSPPPAFKPEPPK 14 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 DNS(1)PPPAFKPEPPK 99.86 0.0030883000000000004 0.0 838930.0 475070.0 406650.0 368190.0 397100.0 656100.0 671460.0 605930.0 1017400.0 553430.0 True False 834413.2940938863 490882.41776412085 463902.7853348364 414802.8162486288 447668.33120389876 610745.3512932735 638978.9145737058 651147.5734501958 766675.4024615384 518109.6235847395 1.6104956482388397 0.9474489479036563 0.8953757355926871 0.8006082059982922 0.8640417217239361 1.1787956129199035 1.2332890289755396 1.256775677982938 1.4797551860878428 1.0 18.982897855494475 2.534770315757699 5.15224759675699 1.2567644971064122 0.999998348148466 0.15829026281569092 0.2368935548616871 0.34517388858951153 19.28381533337449 0.0793183319900674 0.07313918737317203 342.58655572761296 -2.534770315757699 -0.25676614895794625 DNSEEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNSEEFR 7 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9 Q8WWM7 ATXN2L Ataxin-2-like protein 0 86.095 0.047292 362050000.0 279270.0 310120.0 242310.0 276040.0 287880.0 320000.0 261480.0 255840.0 322630.0 315250.0 False True 277766.4413498138 320442.156728501 276425.14180372393 310986.635696981 324539.8116015573 297879.15319897496 248831.21344939823 274932.07992919686 243122.1595205092 295130.47510089615 0.9411648907313075 1.0857643780058688 0.9366201227074994 1.0537259345740697 1.0996485926795836 1.0093134336504528 0.8431227353404639 0.9315611335468014 0.8237785658610589 1.0 18.17099337523683 2.3299482651516916 6.751408969679852 0.8965164748649704 1.0263995134102468 0.4391845911018427 0.06719321537407555 0.18365325148259506 11.387435649257547 0.022131584228413603 0.018416267234850636 213.7707422309157 -2.3299482651516916 0.12988303854527639 DNSGMIDKNELK ddPTM_BT-474_Trastuzumab_2h_R1 3 DNSGMIDKNELK 12 1 O75340-2;O75340;A0A024QZ42 O75340-2 PDCD6 Programmed cell death protein 6 0 ;; 170.56 3.7229e-05 5807800000.0 5777490.0 4807030.0 4226120.0 3501030.0 3879510.0 5780640.0 5493690.0 5029310.0 7424850.0 5624700.0 False True 5746384.635779477 4967029.087639003 4821120.961906452 3944260.0390313044 4373542.602842702 5381037.962962879 5227939.226766195 5404622.650518713 5595095.205392725 5265726.830452054 1.0912804292368048 0.9432751161557297 0.915566096977455 0.7490438007952449 0.8305676962865239 1.0218984266035172 0.9928238579587284 1.0263773310957596 1.0625494609853119 1.0 22.32820125011295 2.71456730982771 23.008983605319557 1.0203403973157519 0.8998380310909995 0.3208843153502211 0.08325442810480001 363.46624421176455 348553.85923453217 0.029076100296916103 0.027433003469142913 518.283412769783 -2.71456730982771 -0.12050236622475241 DNSLQS(ph)ETVQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNSLQSETVQYK 12 0 A0A3B3ISM3;Q96PX1-2;Q96PX1 A0A3B3ISM3 RNF157 RING finger protein 157 1 DNS(0.004)LQS(0.498)ET(0.498)VQYK 53.403 0.091341 154500000.0 70953.0 135090.0 108280.0 117440.0 132400.0 109940.0 112170.0 76461.0 67014.0 100940.0 True False 70570.99693161937 139586.38898637053 123524.88281336802 132307.8919586055 149260.3552037172 102340.10657092286 106743.90856898784 82166.9080810908 50499.29764159383 94497.92278091823 0.7467994518274176 1.4771371145372616 1.3071703501858472 1.4001142889177047 1.5795093776797495 1.0829878960216486 1.1295899997342842 0.8695102036431492 0.5343958486650571 1.0 16.527994996432312 1.9035635163519442 1.6891176164686348 0.758770352580683 1.304597234411869 0.42994816205369635 0.240242887726938 0.3147951760440661 1.67819368023897 0.15640465099908546 0.07124715529203238 80.08727490271875 -1.9035635163519442 0.545826881831186 DNSNLYMVMEYVPGGEMFSHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNSNLYMVMEYVPGGEMFSHLR 22 0 P22694-2;P22694-4;A0A0A0MS54;P22694-9;P22694-6;P22694-7;P22694-5;P22694;P22694-3;P22694-10;A0A087WVC4;P22694-8;B1APG3;B1APF9;B1APF8;B1APG2;B1APG1;B1APF7;B1APG0;P17612-2;P17612;Q15136;K7ERP6 P22694-2;P17612-2 PRKACB;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha 0 ; 131.77 1.1603e-05 315790000.0 407820.0 463560.0 423910.0 418230.0 392240.0 432400.0 459060.0 388280.0 485150.0 422470.0 False True 405624.34243306157 478989.3143720622 483592.8433082279 471177.8751179118 442189.43901137495 402509.2057601146 436853.514020501 417255.4252458902 365591.28317693697 395507.6029052354 1.0255791278183093 1.2110748588740257 1.2227144048709928 1.1913244439723378 1.1180301864319018 1.0177028274638673 1.1045388528856477 1.0549871157492403 0.9243596848491773 1.0 18.593345902556504 2.9202076390861658 3.304856935541283 1.0332289543727704 1.1699418217541473 0.500161181669676 0.06691728953890631 0.2237926517034764 4.715836410135307 0.02144019557533597 0.023577405768753234 832.1615379848699 -2.9202076390861658 0.1367128673813769 DNSTMGYMAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNSTMGYMAAK 11 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 117.25 0.0019004 0.0 142930.0 125250.0 117710.0 112280.0 101040.0 136900.0 138510.0 132880.0 217480.0 141210.0 False True 142160.48076101585 129418.87053477626 134282.5448463388 126494.63648767209 113906.8450889999 127436.42522793647 131809.74214041638 142796.18035096792 163884.9680826967 132197.8569040366 1.0753614626613137 0.9789785822982167 1.0157694533869448 0.9568584502810472 0.8616391200024197 0.9639825350606366 0.9970641372507123 1.0801701608114926 1.2396945905232186 1.0 17.012339263544295 1.6653311304439682 3.2493599293078903 1.1295396184383701 0.9729424652007777 0.3896124868251185 0.07398941186703173 0.1851237283482119 4.577010991327246 0.044152652815527105 0.019519528584698173 46.27337010287323 -1.6653311304439682 -0.1565971532375925 DNSTMGYMMAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNSTMGYMMAK 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ; 143.79 0.0034786 162270000.0 351490.0 458620.0 470800.0 426140.0 397280.0 414090.0 459540.0 370000.0 568420.0 463660.0 False True 349597.61689421 473884.88945835567 537084.5477330415 480089.2803068819 447871.2531369546 385464.93296301086 437310.2945867229 397611.2788219307 428340.50743777055 434068.82184070314 0.8053967465613256 1.0917275455279403 1.2373257896190102 1.1060211103645392 1.0317977947315387 0.8880272287892421 1.0074676470248982 0.9160097634652234 0.9868032115768158 1.0 18.727564275301763 2.9637933234204508 6.897545290249183 0.9554714302859741 1.0744784183190312 0.16532271480077299 0.10583003339700289 0.34002067531428554 50.654699214620464 0.03276071121725303 0.035534921162751955 920.0116428393853 -2.9637933234204508 0.11900698803305709 DNTFFRES(ph)PVGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DNTFFRESPVGR 12 1 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;F8VWU8;F8VPY7;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3;Q8NEY8-5 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 1 DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR 229.31 2.2341e-11 18776500000.0 5000850.0 5632400.0 4969090.0 5320230.0 5446330.0 5543140.0 5685870.0 5302140.0 6899440.0 5746150.0 True False 4973925.979246666 5819871.029142298 5668694.679895447 5993770.572504527 6139887.842572975 5159955.77894801 5410822.745967298 5697812.610521387 5199165.459759422 5379425.787473478 0.9246202430803937 1.0818758839827178 1.0537731913869988 1.1142026694487748 1.141364912379739 0.959201963704653 1.0058364888250584 1.0591860238669533 0.966490786408131 1.0 22.359020753671825 2.7215913532401834 24.999190088421084 1.0071592034651498 1.0665201433644564 0.22347139962833096 0.059264529169583184 1408.5899160939805 2075137.3277338457 0.01955066263366506 0.01847426830186216 526.734001006084 -2.7215913532401834 0.059360939899306686 DNTIEHLLPLFLAQLKDECPEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DNTIEHLLPLFLAQLKDECPEVR 23 1 P30153;B3KQV6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ; 214.44 1.718e-32 1208920000.0 1339430.0 1422760.0 1342380.0 1356720.0 1337050.0 1565680.0 1596850.0 1474080.0 2333700.0 1680240.0 False True 1332218.6577046637 1470115.7065234187 1531375.4358238743 1528480.6128923637 1507315.3921837625 1457448.2268142826 1519604.2649406134 1584083.3348265707 1758590.90497788 1573005.6446741645 0.8469255416948119 0.9345902295397938 0.9735346093694957 0.9716942962458194 0.9582390230366852 0.9265371880570596 0.9660513743772275 1.0070423715197163 1.1179813059998 1.0 20.585092417146313 1.6177457765093903 2.706658122809812 1.059696368604929 0.9410677651290086 0.5492883374374093 0.04383328216322619 0.17072279684155017 2.8869527304750275 0.029301359278958557 0.011682492307770636 41.4711211560374 -1.6177457765093903 -0.11862860347592041 DNTINLIHTFR ddPTM_BT-474_Trastuzumab_2h_R1 6 DNTINLIHTFR 11 0 O15144;H7C3F9 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;;;;; 183.79 5.1932000000000005e-06 9236200000.0 6027350.0 6631650.0 6267990.0 6346210.0 6223430.0 7051740.0 6993050.0 6141410.0 7549100.0 6660770.0 False True 5994899.417301535 6852380.461332915 7150468.509654255 7149639.535308425 7015946.92134042 6564269.8118104255 6654769.455454773 6599713.199648092 5688725.457757427 6235673.9560279 0.9613875676592082 1.098899735562482 1.1467033972714435 1.1465704566540098 1.1251304944445093 1.0526961252463944 1.0672093349303073 1.0583800959106084 0.9122871878601433 1.0 22.572114065301044 1.4025652374146793 3.897927501247487 0.9574093302667315 1.089474633252446 0.4549202315359733 0.05521147752146618 0.1959129986219581 4.944015434900599 0.04204624384606017 0.014524539018682184 25.267672392048933 -1.4025652374146793 0.13206530298571462 DNTPSGKS(ph)DDDFADFHSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNTPSGKSDDDFADFHSSK 19 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 DNT(0.182)PS(0.132)GKS(0.686)DDDFADFHSSK 129.9 1.1238e-05 89524000.0 71428.0 68543.0 59181.0 67689.0 71271.0 100100.0 102610.0 99982.0 105370.0 89868.0 True False 71043.43958439676 70824.41231988158 67513.17038952658 76258.42045969045 80346.93939368676 93180.32261005438 97646.36229173449 107443.16453830889 79402.97538566176 84132.5473001343 0.8444227812448911 0.8418194217657845 0.8024619788187348 0.9064080775736683 0.9550042400006887 1.1075419157064514 1.1606252921760591 1.2770701468840153 0.9437842777112135 1.0 16.360376405294094 2.9662954644766355 1.7428569219365049 1.1381738531252594 0.8365214846687247 0.6232162025755474 0.08973995184612439 0.20288002197926489 1.245614350535469 0.03225585075161027 0.0372366946370583 925.3274898358483 -2.9662954644766355 -0.30165236845653476 DNTRPGANS(ph)PEMWSEAIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DNTRPGANSPEMWSEAIK 18 1 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 1 DNTRPGANS(1)PEMWSEAIK;DNTRPGANS(0.993)PEMWS(0.007)EAIK;DNTRPGANS(1)PEMWSEAIK;DNTRPGANS(1)PEMWSEAIK 275.2 2.8026999999999995e-39 1583950000.0 889682.0 784350.0 689387.0 723330.0 725208.0 895009.0 883361.0 868126.0 1137944.0 896260.0 True False 884892.0509649618 810456.6156004128 786446.6973407771 814903.5038353046 817558.9401554192 833139.1344545657 840629.4536632765 932909.970374505 857512.9488683832 839059.9194732084 1.0546231924896716 0.9659102965009296 0.9372950358950959 0.9712101423542314 0.974374917906592 0.9929435492254713 1.0018705865381503 1.1118514288708 1.021992504905681 1.0 19.678414315423872 1.9551200007381535 8.94318885462768 1.0571383856904388 0.9804845905247215 0.31815749199051413 0.039175186262097525 0.3852379396392873 73.46526248020088 0.01616959265840444 0.010303204549857205 90.18202868695988 -1.9551200007381535 -0.07665379516571735 DNTRPGANSPEMWSEAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNTRPGANSPEMWSEAIK 18 1 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ; 179.95 7.394e-14 1933580000.0 588510.0 592470.0 526880.0 453090.0 506300.0 651160.0 591350.0 520760.0 832730.0 631920.0 False True 585341.5275496081 612190.0057943214 601060.1242769434 510451.14754363557 570774.3039247892 606146.8418657635 562744.1413236246 559621.7555656981 627514.8495103186 591590.3245860694 0.9894372900016012 1.0348208555010858 1.0160073606638174 0.8628456658766246 0.9648134531682122 1.0246057392670835 0.9512395959439867 0.9459616432321819 1.060725342236429 1.0 19.174238931901105 -0.6574694928288897 8.752501064680843 1.0000000000000506 0.9790618726151756 0.0027719979522906613 0.05376223305961485 0.0 0.0 0.052168207649225355 0.012296164463705059 0.22005462823684685 0.6574694928288897 -0.020938127384874994 DNTVHDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DNTVHDLR 8 0 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 ;; 129.38 0.0010930999999999998 835514000.0 873190.0 1083090.0 979740.0 967660.0 975610.0 977290.0 1044880.0 952540.0 1119210.0 935070.0 False True 868488.8420605299 1119139.9959082683 1117678.87594726 1090165.6567835852 1099848.1506064849 909732.2425932054 994335.1625707771 1023623.3717001126 843395.6921456441 875393.0320462968 0.9921130398198078 1.2784428878674015 1.2767737862096091 1.2453442246795607 1.2564049636487367 1.0392271920038456 1.135872832168248 1.1693300428806435 0.9634480299370712 1.0 19.739571374895082 2.741134171562522 24.993905787198898 1.0861538125292929 1.2193220912277043 0.35248133053244013 0.0972336251831835 287.4415275969598 2791589.331672415 0.03023113761232257 0.030753786638855043 550.9778900167418 -2.741134171562522 0.1331682786984114 DNVDDPTGNFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNVDDPTGNFR 11 0 Q12907 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 0 94.363 0.0079059 0.0 143950.0 188620.0 183020.0 158120.0 164120.0 189360.0 184110.0 147830.0 220150.0 172020.0 False True 143174.98919434866 194898.10267680205 208787.6251616421 178137.97578759096 185019.7091845477 176269.98890549314 175203.89593150016 158861.8252655298 165896.9823588635 161041.53632626875 0.8890562798921477 1.2102349935481254 1.2964830684342217 1.106161676368294 1.1488943374813527 1.0945622659012124 1.087942278298554 0.9864649138944944 1.0301502714353001 1.0 17.297073315095567 2.082315129896718 1.553084395821665 1.0019085839465516 1.1417748790310056 0.21776048096799938 0.0982392454914756 0.5558959996040607 2.5385274446700055 0.06155273753030298 0.031947037363534374 120.86905590561636 -2.082315129896718 0.13986629508445403 DNVKNEDKDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNVKNEDKDQK 11 2 Q8IX12-2;Q8IX12 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 118.37 0.00041058 296480000.0 425000.0 286090.0 274970.0 256470.0 241600.0 313130.0 417680.0 391950.0 758220.0 345150.0 False True 422711.84722193907 295612.33270494314 313683.385917915 288939.07570353814 272366.32792460814 291484.060128734 397475.2227074523 421199.2992817717 571366.8406274696 323122.23150221794 1.308210348934278 0.9148622529951611 0.9707886221866533 0.8942098300084154 0.8429204225854654 0.9020860581879623 1.2301079404520143 1.3035293093996863 1.7682684288578505 1.0 18.30172048896649 1.985399683471148 2.4600786473802665 1.394003263008018 0.9608614653708988 0.39939772986110966 0.21295117057056648 0.26330988457308074 2.97148219558398 0.10879104472817241 0.059342007075039026 96.69403498692662 -1.985399683471148 -0.43314179763711913 DNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGK 39 0 P56192 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 215.7 1.1987e-39 24434000.0 3231.2 3871.4 2348.2 2912.4 3311.9 5294.4 3278.2 3113.7 4328.4 3192.8 False True 3213.8035782200686 4000.2572086892797 2678.8061490797077 3281.1095413849007 3733.650833830751 4928.410589677038 3119.6209420598752 3346.0601050482287 3261.7238175884872 2989.0327705063964 1.0751985090065077 1.338311593021298 0.8962117028331774 1.0977161487690954 1.2491167278832485 1.6488312334033313 1.043689106670903 1.1194457745879265 1.091230531084439 1.0 11.545462998870432 DNVSSPGGATIHALHVLESGGFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNVSSPGGATIHALHVLESGGFR 23 0 J3QKT4;J3KQ22;E2QRB3;P32322-2;P32322;P32322-3 J3QKT4 PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial 0 63.13800000000001 0.023252 76325000.0 119890.0 150300.0 134830.0 138390.0 140600.0 138150.0 148010.0 133870.0 157480.0 118370.0 False True 119244.52556103132 155302.64464173137 153812.8920366311 155910.15981055345 158504.57659850968 128600.01567011997 140850.19084689234 143860.059178086 118671.16412388741 110815.5252583444 1.0760633519810188 1.4014520463596964 1.388008509439872 1.4069342670810778 1.4303463005656267 1.160487353828036 1.271033012012785 1.2981940828480922 1.0708893347500648 1.0 16.757800491601472 1.1776212586544321 2.9003780232107763 0.9987227373087333 1.314293179763499 0.4985983683488512 0.1084910783560223 0.19901943640164038 2.957433265884644 0.10110976660651759 0.02784733581581274 15.052937507483014 -1.1776212586544321 0.3155704424547656 DNVYYYDEEGGGEEDQDFDLSQLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNVYYYDEEGGGEEDQDFDLSQLHR 25 0 A0A087WXI5;P12830-2;P12830 A0A087WXI5 CDH1 Cadherin-1;E-Cad/CTF1;E-Cad/CTF2;E-Cad/CTF3 0 181.67 2.3559e-17 89734000.0 32675.0 40372.0 45049.0 37608.0 45340.0 63892.0 42689.0 41647.0 42272.0 45358.0 False True 32499.081430533784 41715.75761461065 51391.50762707259 42369.168943964876 51113.78024876543 59475.29642559027 40623.969982183546 44754.91061918092 31854.63201577963 42463.21360706248 0.7653467241379145 0.9823975641747589 1.2102594990249433 0.9977852674089189 1.2037190760396004 1.4006310727198081 0.9566861886173158 1.053968996160415 0.750170072160567 1.0 15.37392593778126 1.434424330335632 3.5554896606619737 0.8765396700285717 1.0868448722043238 0.1585852117483223 0.17367862769890524 0.3915974459598657 8.906241596277763 0.13099219940703286 0.04578686498029141 27.19094681074246 -1.434424330335632 0.2103052021757521 DNWEELYNR ddPTM_BT-474_Trastuzumab_2h_R1 4 DNWEELYNR 9 0 E9PLK3;P55786;P55786-2;H0YDG0 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ;;; 237.08 7.0249e-10 1485160000.0 1236130.0 1249240.0 1120140.0 1019130.0 987060.0 1252930.0 1254410.0 1062280.0 1357770.0 1171730.0 False True 1229474.8134269547 1290820.1982184744 1277845.9755685823 1148151.7535062458 1112756.24023702 1166317.8981799737 1193729.3959884488 1141552.7277485414 1023165.7766858693 1096949.188231478 1.1208129114978762 1.176736545381431 1.164908994215812 1.0466772443282606 1.0144100129478435 1.0632378515729914 1.0882267007398962 1.0406614453938146 0.9327376214530377 1.0 20.06506526955549 3.7906655362690973 0.37741993454304884 0.9930268062492843 1.2222815924907702 0.6038496279521726 0.045093699616002736 2.250334194149259 0.42735485417590624 0.04679893627030617 0.2210413577106152 6175.406296523496 -3.7906655362690973 0.22925478624148588 DNWTDAEGYYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DNWTDAEGYYR 11 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 109.24 0.0045501000000000005 988790000.0 771790.0 866320.0 813020.0 886180.0 942870.0 928000.0 845180.0 850720.0 1165600.0 980850.0 False True 767634.7683939296 895154.9374985015 927486.1491034776 998370.2971379182 1062938.9056716682 863849.544277026 804295.4144988612 914205.0462686281 878353.4982397966 918251.3132520658 0.8359745935731746 0.9748474350972977 1.0100569808266386 1.087251695401452 1.15756862019307 0.940755032756369 0.8758990081379573 0.9955935080897326 0.95655022275877 1.0 19.80852952868902 4.731186402147644 3.15813797551991 1.0017320005588637 0.8127447515090043 0.3177477874736703 0.07302294719503571 0.45839856353093705 7.1731436672076345 0.019707224360231264 0.2125371680885825 53850.08611573755 -4.731186402147644 -0.18898724904985942 DNYSPGWK ddPTM_BT-474_Trastuzumab_2h_R1 2 DNYSPGWK 8 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 131.22 0.0023596 503090000.0 638400.0 582390.0 574200.0 528050.0 597980.0 667500.0 641440.0 598160.0 753330.0 643550.0 False True 634962.9253329086 601774.4990878106 655042.3689641289 594901.0758578144 674129.2084948553 621357.2961259856 610411.0966612429 642797.7365949355 567681.9156048272 602478.0880291258 1.0539187033507722 0.9988321750528442 1.0872467928368241 0.9874235888045357 1.1189273467191485 1.031335924860967 1.0131672981802013 1.0669230124164457 0.942244916262222 1.0 19.20054924629132 1.2415325673592168 24.997823906601717 0.9711224499269985 1.0442883089363517 0.34954222974691773 0.04015652208854144 73.65873000857218 619604.693986772 0.027088451332998375 0.00891217494352817 17.439441293908978 -1.2415325673592168 0.07316585900935324 DNYVPEVSALDQEIIEVDPDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DNYVPEVSALDQEIIEVDPDTK 22 0 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 RPS17 40S ribosomal protein S17 0 96.303 0.0014849 21370000.0 66762.0 57819.0 58143.0 48057.0 46691.0 65786.0 71208.0 61633.0 91241.0 66603.0 False True 66402.56080995554 59743.4704626764 66329.02901198428 54141.011272604774 52636.82209076108 61238.36866358666 67763.39699902378 66232.36742603249 68755.8781167617 62352.33951830286 1.0649570059911508 0.9581592434898027 1.0637777110594882 0.8683076158948656 0.8441835943511006 0.9821342572977682 1.0867819479192526 1.062227463118536 1.102699251510509 1.0 15.928156071892001 2.3328980769494665 5.250532110470556 1.0678437578655726 0.9563508795849145 0.32198230785937476 0.07074623333232355 0.24197502337502413 10.702541194306647 0.026150680447557466 0.021585556547871074 215.22765652012464 -2.3328980769494665 -0.11149287828065813 DPALCQHKPLT(ph)PQGDELSEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPALCQHKPLTPQGDELSEPR 21 1 K7EQL6;Q8NFA0 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 DPALCQHKPLT(1)PQGDELSEPR 149.2 1.2159000000000002e-07 306000000.0 148480.0 135940.0 131080.0 133540.0 131900.0 182130.0 169510.0 153920.0 204880.0 167440.0 True False 147680.60017767883 140464.6807225345 149534.92463221546 150446.1503078353 148696.6831674497 169539.78178790386 161310.15370891627 165406.29198992322 154390.06925134658 156753.8358474037 0.9421179352921388 0.8960844879054423 0.9539474668918744 0.9597605665885663 0.9485999648021535 1.0815670370768278 1.0290667072794828 1.055197731498848 0.9849205183191931 1.0 17.258141221389593 2.841671085138097 6.4176826261043045 1.035017959087123 0.9384943408622651 0.6943475658104056 0.02981887226299198 0.1289300663817757 6.8652511317162155 0.009042515980013297 0.009608726842766006 694.498137101254 -2.841671085138097 -0.09652361822485778 DPALNT(ph)S(ph)LPQKVLGT(ph)T(ph)EEISGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DPALNTSLPQKVLGTTEEISGK 22 1 E9PCH4;Q8TEU7-2;Q8TEU7-5;Q8TEU7-3;Q8TEU7;Q8TEU7-4;D6RE77;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 4 DPALNT(1)S(1)LPQKVLGT(1)T(1)EEIS(0.001)GK 42.468 0.06564600000000001 760840000.0 272440.0 350120.0 328570.0 297030.0 297810.0 313210.0 285840.0 346020.0 243720.0 358150.0 True False 270973.2133109295 361773.5325479906 374829.80001836334 334633.967544828 335734.338241836 291558.52991703385 272012.8271851608 371841.769453958 183658.4716806825 335292.56037235865 0.8081694774557496 1.078978704884545 1.1179186308282434 0.9980357666546515 1.0013175892390416 0.8695645665183981 0.811270094639372 1.1090069193334016 0.5477558806456095 1.0 18.3550609467335 2.7748595667196176 6.7461320984716355 0.8890035376521388 1.0120522966046301 0.14698096549015094 0.15528751167582244 0.4610431088675755 66.15594481543002 0.046759433271362234 0.04902484183947129 595.4695616079495 -2.7748595667196176 0.12304875895249134 DPANPGELVLDHIVER ddPTM_BT-474_Trastuzumab_2h_R1 1 DPANPGELVLDHIVER 16 0 H0YDE3;E9PRI1;Q96NY9 H0YDE3 MUS81 Crossover junction endonuclease MUS81 0 143.71 1.3856e-06 36481000.0 15596.0 18120.0 16601.0 13255.0 14694.0 14926.0 17938.0 17316.0 20342.0 15968.0 False True 15512.03286887849 18723.113246228702 18938.276501521275 14933.08164093423 16565.193801838548 13894.200752024673 17070.27041018549 18608.207848866346 15328.986668834898 14948.908569107403 1.037669927350737 1.2524735942877372 1.2668668360617363 0.9989412653037506 1.1081206179875414 0.9294458312988594 1.1419074731289733 1.24478705337198 1.0254251404355328 1.0 13.867752535583783 0.7072911358339187 0.01298679286863041 8.906927664474572e-06 2.1683836994035723 0.08467851677828886 0.11017837632085678 3446.5080094191007 22.860346635423863 1954.8780627185968 1858.1578106235643 5.096724231319645 -0.7072911358339187 2.168374792475908 DPAQPMS(ph)PGEATQSGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 DPAQPMSPGEATQSGAR 17 0 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 DPAQPMS(1)PGEATQSGAR;DPAQPMS(1)PGEATQSGAR;DPAQPMS(1)PGEATQSGAR 319.32 1.97e-58 1520670000.0 634479.0 651847.0 674990.0 667854.0 653412.0 752160.0 626471.0 651690.0 750555.0 665818.0 True False 631063.0355612434 673543.3333451669 770022.7248817447 752404.2479233867 736620.1451236514 700164.9495941896 596166.204378376 700322.4170147671 565590.7771717318 623324.9252045312 1.0124142482416745 1.0805653778792137 1.2353472382466941 1.2070819206796533 1.181759489052912 1.1232744292464238 0.9564292719126488 1.123527054184414 0.9073771227520621 1.0 19.249624878104903 2.372553708112351 6.31076454766303 1.018340834526507 1.1488978558536047 0.4304307308172065 0.07928434793877857 0.23430794349241144 12.422096237840881 0.028799731235869493 0.023985328065563832 235.80537925451023 -2.372553708112351 0.13055702132709768 DPAQPMS(ph)PGEATQSGARPADR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 DPAQPMS(1)PGEATQSGARPADR;DPAQPMS(1)PGEATQSGARPADR 187.72 1.6809e-17 2515200000.0 509890.0 717030.0 663860.0 769350.0 743450.0 721650.0 667390.0 662520.0 902410.0 759680.0 True False 507144.8088941051 740895.9100962126 757325.7176254396 866749.6311167682 838123.950726613 671764.0340813745 635105.7960226164 711960.6066083933 680023.1471744807 711196.5720052295 0.7130866891894636 1.0417596755384315 1.0648613160355207 1.2187202037166103 1.178470177891198 0.9445546569316633 0.8930102042420227 1.0010742945526432 0.9561676390778222 1.0 19.43988884477579 -0.3368670701235984 7.750957225045347 0.9999999986512942 1.0090467130008791 0.0 0.13598841100054218 0.0 0.0 0.135316144473794 0.03189432112047945 0.4603974715579285 0.3368670701235984 0.009046714349584928 DPASDQMQHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPASDQMQHWK 11 0 P04040 P04040 CAT Catalase 0 ; 158.56 2.9688e-05 528480000.0 691880.0 647230.0 598300.0 509420.0 590530.0 698840.0 691320.0 636020.0 815750.0 628470.0 False True 688154.9949550941 668772.6592912026 682535.4394831742 573912.51976799 665730.4951544649 650530.8356924102 657878.2105011385 683483.0420441192 614719.3429899743 588360.5065397627 1.169614525968505 1.1366715676148216 1.1600633147477362 0.9754436495801808 1.1315009891974679 1.1056670671494941 1.1181549461404539 1.1616738962711595 1.0448004856839082 1.0 19.166340883960437 -4.99999999917993 0.2697655586694558 0.21396435339551534 1.122508476755206 0.2831946131898566 0.05585042171903119 287.443290803753 2.792632784086068 125.76522861087366 0.06909217620037028 1.0000000018882815e-05 4.99999999917993 0.9085441233596907 DPASKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPASKR 6 1 P22626;P22626-2;A0A087WUI2;A0A087X0F8;A0A0A0MQW7;A0A0G2JNL1 P22626 HNRNPA2B1;LILRB4 Heterogeneous nuclear ribonucleoproteins A2/B1 0 83.287 0.09165 306380000.0 68433.0 56742.0 54926.0 44112.0 54493.0 47852.0 60000.0 61483.0 84092.0 81403.0 False True 68064.56433162109 58630.62316873668 62659.10337464959 49696.57467709476 61432.36054468409 44544.103871491694 57097.57077774158 66071.173664348 63368.65337506954 76207.7908473854 0.8931444354282355 0.7693520900789663 0.8222138796823467 0.6521193453385585 0.8061165382383179 0.5845085309019944 0.7492353490745564 0.8669871272959858 0.831524607529594 1.0 16.21765087388662 1.0594456800016587 1.203616733891815 0.9910129455050147 0.7527906952247739 0.4158797282578919 0.08594230960889208 0.44412963986574006 1.3334217231145449 0.08065003487263002 0.025350471386607613 11.466890886883704 -1.0594456800016587 -0.2382222502802408 DPDASKPEDWDER ddPTM_BT-474_Trastuzumab_2h_R1 1 DPDASKPEDWDER 13 1 P27797;K7EJB9 P27797 CALR Calreticulin 0 111.83 0.00086516 569860000.0 1133300.0 1043500.0 894570.0 714900.0 740510.0 1176900.0 1048700.0 1054600.0 1620500.0 1048800.0 False True 1127198.4387214677 1078232.2666909287 1020517.6802581713 805406.2666996516 834809.5591533589 1095543.6731246037 997970.3745769595 1133299.6071502923 1221149.4885875005 981864.6860771446 1.1480181074899198 1.098147516638777 1.0393669257374532 0.8202823445229511 0.8502287239687611 1.1157786695656018 1.0164031650472758 1.1542319661970708 1.2437044593857156 1.0 19.905164690243 1.968016999602555 1.940082635014652 1.1465906633816967 0.9984081053768916 0.17224786971902128 0.11545603646288377 0.551127408425226 3.848210660995338 0.07414788463320814 0.03707618555429128 92.90027500520911 -1.968016999602555 -0.14818255800480507 DPDDHTVCHLLFANQTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPDDHTVCHLLFANQTEK 18 0 P00387-2;P00387;P00387-3 P00387-2 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 ; 234.77 5.1705e-24 658760000.0 260620.0 266796.0 295634.0 189069.0 253530.0 419610.0 255243.0 116737.0 332834.0 232656.0 False True 259216.85087760395 275676.14357841236 337256.6975032073 213005.1160143185 285815.5427099579 390603.34835569345 242895.9209670516 125448.5077184748 250811.5204471043 217807.69489317734 1.190117966239602 1.265685969972807 1.5484149798684252 0.9779503709397677 1.3122380403049336 1.7933404444102072 1.1151852145819672 0.5759599438394515 1.1515273625668436 1.0 17.73269539813408 1.998027943147002 24.999820296256164 0.8579282593904354 1.3448357757636782 0.39242142139939795 0.2437953401837886 66.33594570070612 840948.1157414629 0.09138772926524608 0.06646094654376657 99.54694652634929 -1.998027943147002 0.4869075163732428 DPDEGVSPEHLEQLLGQLGQTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPDEGVSPEHLEQLLGQLGQTLR 23 0 Q8IWY9;Q8IWY9-1 Q8IWY9 CDAN1 Codanin-1 0 143.31 1.6275e-07 27082000.0 16014.0 15346.0 14715.0 18473.0 18202.0 17041.0 17524.0 15444.0 17490.0 18860.0 False True 15927.782403322668 15856.782333147094 16786.74409492714 20811.679905920642 20519.91680829352 15862.995780199157 16676.297171819075 16596.509703042953 13179.823853992839 17656.338653141647 0.902099960599056 0.8980787378772692 0.9507488740843913 1.178708695770148 1.1621841431231468 0.8984306481557321 0.9444935045382021 0.9399745909432863 0.7464641516517192 1.0 14.107898585808982 DPDEPVLLEEPVVLALAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPDEPVLLEEPVVLALAEK 19 0 P14550 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] 0 ; 120.14 0.00010709 17461400.0 23915.0 20803.4 19747.6 14649.9 20025.3 23692.0 22225.0 21009.0 28051.0 27508.0 False True 23786.244297206285 21495.82859307914 22527.890430783784 16504.57583791192 22575.403255747733 22054.22780496908 21149.89184225512 22576.798261540385 21138.206914142553 25752.415889216358 0.923650984805919 0.8347111465406384 0.8747874579105869 0.6408942721689694 0.876632443063372 0.8563945184732797 0.8212779699286966 0.8766866129633398 0.8208242288830861 1.0 14.652420160501642 -0.8757047376875287 0.5108371174836125 1.0450345241004784 0.8302080437149183 0.3153336486221441 0.07193044862129935 19.687994517200266 3.418557282074845 1.4539898008821008 0.03307542874033482 0.13313592570487365 0.8757047376875287 -0.21482648038556007 DPDQTDGLGLSYLSSHIANVER ddPTM_BT-474_Trastuzumab_2h_R1 8 DPDQTDGLGLSYLSSHIANVER 22 0 P06396-2;A0A0A0MS51;A0A0A0MT01;P06396-4;P06396-3;P06396 P06396-2 GSN Gelsolin 0 ;;;;;;; 342.48 1.7714e-81 7926798000.0 3288272.0 3949645.0 3865117.0 3819354.0 3564025.0 4232096.0 4074342.0 3688573.0 4178987.0 4225452.0 False True 3270568.308913366 4081106.5462141824 4409291.877400781 4302883.824792812 4017882.4581187936 3939541.164802398 3877250.511962084 3963833.047454171 3149131.6494068624 3955780.0357685424 0.8267821464643064 1.0316818704054385 1.114645363880585 1.0877459782611074 1.015699159657189 0.9958949004193077 0.9801481571026733 1.002035758210217 0.7960836095364535 1.0 21.915530775469545 1.3889745258956725 10.632532120612488 0.8974646964839343 1.0127397542730496 0.20428340564153336 0.08549812365905396 0.5681415527013827 64.20376147271334 0.056141116655428466 0.020603503570857263 24.489195930869386 -1.3889745258956725 0.11527505778911529 DPEEIEKEEQAAAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DPEEIEKEEQAAAEK 15 1 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 ;;; 191.44 1.5977e-07 3282190000.0 3684690.0 2278720.0 2052530.0 1776280.0 1832480.0 2963090.0 2835910.0 2839390.0 4246060.0 2738640.0 False True 3664852.0384475477 2354565.817684673 2341508.3830894222 2001156.865873911 2065835.4660400888 2758258.5626635947 2698726.199071751 3051279.699930276 3199675.4072890147 2563857.650532332 1.4294288287365007 0.9183683880404967 0.9132755020947659 0.7805257306147291 0.8057527942751271 1.0758235981201607 1.0526037584463461 1.190112758130991 1.2479926124699898 1.0 21.28988473277376 2.223420421056791 2.1827728076747737 1.1566450355657445 0.9557226678756723 0.12901692659542496 0.18037003748691147 0.5354472371773209 5.166699488903723 0.08577577222919015 0.05695585861486814 167.27091056348564 -2.223420421056791 -0.2009223676900722 DPEGAEDEFVTSIETWR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPEGAEDEFVTSIETWR 17 0 J3KMW0;Q8TB40-2;Q8TB40 J3KMW0 ABHD4 Abhydrolase domain-containing protein 4 0 68.03399999999999 0.08778899999999999 7704000.0 4883.5 6333.6 5386.4 3634.0 5752.6 5938.7 4383.1 6099.6 8242.8 4572.9 False True 4857.207778607856 6544.410047257947 6144.758300571902 4094.0640273975864 6485.159511668461 5528.171647196099 4171.072707931986 6554.78312514121 6211.472387861187 4281.053606943338 1.1345823305576148 1.5286914503111395 1.4353378548229028 0.9563215982059935 1.514851274263498 1.2913110076991536 0.9743098524080668 1.5311144701645791 1.4509214221907776 1.0 12.063750185599185 DPEKRPTAAELLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPEKRPTAAELLR 13 2 O95747;C9JIG9 O95747 OXSR1 Serine/threonine-protein kinase OSR1 0 94.717 0.0028275 164720000.0 109330.0 129490.0 124870.0 121200.0 133870.0 115490.0 120020.0 124130.0 169700.0 148860.0 False True 108741.37942770487 133799.99637164208 142450.61061050315 136543.90757308414 150917.55099034467 107506.44813421757 114214.17407907576 133393.2109193681 127879.70886349845 139359.62735454214 0.7802932706691158 0.9601058707716266 1.0221799047158564 0.9797952977134864 1.0829359539430903 0.7714317996898232 0.8195642902266499 0.9571869088025402 0.9176237859632198 1.0 17.088453145747472 2.7405014774793823 24.992895523145968 0.8899852301027855 0.9687784357295588 0.12702022846854555 0.09381052090215553 362.0231822514402 4661882.429030726 0.0299414822607783 0.030339460417543984 550.1757922176807 -2.7405014774793823 0.07879320562677328 DPELWGSVLLESNPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPELWGSVLLESNPYR 16 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 166.6 1.5398e-08 162297000.0 37251.6 30409.4 25528.0 33448.6 37535.0 46081.0 33673.0 29596.0 49800.0 49464.0 False True 37051.041524641856 31421.558496129514 29122.120506646286 37683.18933043775 42314.85976262488 42895.528933006084 32044.108346648216 31804.60380544287 37527.457285811506 46307.16517173901 0.8001146558471234 0.6785463627409847 0.6288901598411674 0.8137658435942345 0.9137864433223692 0.9263259535305126 0.6919902833137482 0.6868181994619924 0.8104028209594287 1.0 15.498947820506935 -2.6687466051629323 1.4976422431408658 3.350498635581803 0.7657843363738605 0.33669845070388826 0.09548877724103295 836996.2335634006 36426.07582830442 6652633.943055527 0.02853695874620958 0.0021441412636950363 2.6687466051629323 -2.584714299207943 DPFIGEHTEEILEEFGFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPFIGEHTEEILEEFGFSR 19 0 D6RB81;Q9UHK6;Q9UHK6-5 D6RB81 AMACR Alpha-methylacyl-CoA racemase 0 221.24 2.7126999999999996e-19 18709000.0 21092.0 23400.0 23515.0 23301.0 25917.0 26905.0 21634.0 23012.0 25414.0 26275.0 False True 20978.4430155415 24178.854854401303 26825.707603955943 26250.90421089465 29217.376327905928 25045.120677557556 20587.480770094367 24729.272292568283 19151.06023015288 24598.10700484075 0.8528478639194909 0.9829559180973991 1.0905598385549269 1.0671920487917481 1.1877896263381624 1.0181726859155802 0.8369538666549781 1.0053323325937935 0.7785582941965443 1.0 14.586259673983426 2.393010946025346 7.698976091044321 0.9145224291762564 1.0443831637290695 0.2727762055670868 0.10186180963205566 0.33075265821508965 26.169256362121 0.0359258829810997 0.030003463493599704 247.17864435191643 -2.393010946025346 0.1298607345528131 DPFYDRPPLFSLVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPFYDRPPLFSLVGR 15 1 A0A3B3ITW6;Q12756-3;Q12756-2 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 89.484 0.0058202 100810000.0 143990.0 219850.0 194700.0 206470.0 209110.0 174230.0 183320.0 170150.0 211570.0 177460.0 False True 143214.7738387928 227167.5743478683 222112.06763726246 232609.08083015398 235738.91900792555 162185.8901933043 174452.1112495933 182847.45700419313 159431.408392754 166134.35086885007 0.8620419142086367 1.3673726905954515 1.336942459374957 1.400126341203093 1.4189655406907555 0.9762333276959516 1.0500664693198183 1.100599942443792 0.9596534826118681 1.0 17.34199087828713 2.728851688880249 24.859503166216935 1.0325699491912261 1.2922660196615632 0.4146461103731943 0.1532651489132657 637.9470691718969 1633446.732059313 0.04930339099957281 0.04701722979836768 535.6137147439773 -2.728851688880249 0.25969607047033705 DPGVLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DPGVLDR 7 0 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 0 ;;; 116.54 0.012638 14522400000.0 4168110.0 4728810.0 4239490.0 4348400.0 4220060.0 4491990.0 4304400.0 4218560.0 5010610.0 4139020.0 False True 4145669.3588805534 4886205.582223984 4836373.341692333 4898906.994148505 4757459.626744709 4181469.304307066 4096179.727595185 4533370.368613635 3775812.3042341387 3874864.200006702 1.0698876515139248 1.2610004712463299 1.2481400875117037 1.2642783698432662 1.2277745441340835 1.0791266708907719 1.0571156861672986 1.1699430314501846 0.9744373245977519 1.0 21.88571431934719 2.7356151115329146 20.741700838854165 1.0751332166448238 1.2214812731069071 0.5362780570235877 0.07227615527330244 20.54509014240651 144672.62338074468 0.022667496905380075 0.022305361461454582 544.0203074251975 -2.7356151115329146 0.14634805646208338 DPHLACVAYER ddPTM_BT-474_Trastuzumab_2h_R1 6 DPHLACVAYER 11 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ;;;;; 123.64 0.00036576 16605300000.0 1615837.0 2866260.0 2878280.0 3026830.0 2736565.0 2112650.0 2476340.0 1824840.0 1827960.0 2220008.0 False True 1607137.5131283663 2961661.7314092405 3283516.8055417533 3410026.367652125 3085050.3318584673 1966607.4781431677 2356549.9736625464 1961018.8271497628 1377483.7514090755 2078325.1887955277 0.7732849131563317 1.4250232578500583 1.5798859693581842 1.6407568873417597 1.484392504354132 0.9462462798148037 1.1338697073811923 0.9435572631856767 0.6627854768999755 1.0 20.98698997503776 2.7329024316239305 23.984437470194067 0.9510596230153291 1.408649823991071 0.44297124134361254 0.24736314885161428 255.3267005447438 1082298.4749911586 0.08162836838699418 0.07901215112683813 540.6328510015232 -2.7329024316239305 0.4575902009757419 DPILFPSFIHSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DPILFPSFIHSQK 13 0 P04040 P04040 CAT Catalase 0 150.22 4.4137e-05 349410000.0 613050.0 697300.0 594550.0 560900.0 646840.0 758960.0 657910.0 631750.0 902370.0 604920.0 False True 609749.4069162584 720509.2089732483 678257.4720787583 631909.882489627 729211.239878946 706494.8815996677 626084.3798397324 678894.3929614986 679993.0046385081 566313.4877019321 1.0766994255965663 1.2722797966494381 1.1976714078117554 1.1158305359349312 1.2876458988078205 1.2475332072110514 1.105543825876984 1.1987960868041716 1.2007360223714272 1.0 19.111241364864405 -1.2729488444550643 3.55014274118514 0.9994985186413707 1.191235428528587 0.4149414612592124 0.0673564395775487 3570699.291729483 2560686.5549220755 12492.911102593525 0.014918732078498252 0.053339772070241494 1.2729488444550643 0.19173690988721637 DPLELFR ddPTM_BT-474_Trastuzumab_2h_R1 5 DPLELFR 7 0 Q16401-2;Q16401;Q4VXH0 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ;;;; 154.92 0.0038296 1053413000.0 713043.0 877266.0 785712.0 806809.0 738854.0 787189.0 777015.0 711547.0 885676.0 752892.0 False True 709204.0557145254 906465.2684915039 896333.4200688683 908950.93667601 832942.6773692399 732772.4772735866 739427.8159644477 764646.2503024555 667413.0172503688 704841.787976729 1.0061890027126774 1.2860549473003602 1.2716803052239882 1.2895815091854625 1.1817441751860778 1.0396268918405556 1.0490692075550727 1.0848480656877584 0.9468976281417697 1.0 19.426939934335934 2.8006102992629542 3.661148593396861 1.0347261103705125 1.223843337097721 0.5440000906663776 0.08352699149690242 0.18668790722558626 5.016291359388446 0.02657069270414053 0.02773405208919809 631.8446306649995 -2.8006102992629542 0.18911722672720854 DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 35 1 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.836)PT(0.164)MGR;DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.991)PT(0.009)MGR 213.99 1.3709e-29 2788100000.0 466560.0 477390.0 477130.0 480950.0 482530.0 472540.0 532520.0 435730.0 629040.0 519630.0 True False 464048.0927996887 493279.637561651 544305.7567116951 541838.2206870855 543977.3353206168 439874.4220395112 506759.9731760494 468246.3851921071 474021.5207041538 486466.76852237474 0.9539152986939232 1.0140047984366334 1.1188960725210566 1.1138237095473131 1.1182209567426946 0.9042229613661256 1.0417155003522944 0.9625454717377482 0.9744170647955606 1.0 18.89198172954501 2.747917188606528 24.99746957346003 0.9787577723729614 1.0668503920044647 0.3621276133344147 0.05775223406219292 779.7138457857646 2083121.228601734 0.018540367973127008 0.01941768095465226 559.6508769343051 -2.747917188606528 0.08809261963150339 DPLLDDHGDFIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPLLDDHGDFIR 12 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ; 184.1 1.4758e-05 295900000.0 224640.0 228710.0 207524.0 187663.0 198820.0 226630.0 209230.0 198998.0 229870.0 214270.0 False True 223430.56319985024 236322.47409188564 236741.57536905594 211421.11655847906 224138.54850153386 210963.6015296364 199108.74556378112 213848.2412513692 173221.61860019056 200595.10515422365 1.1138385606571506 1.1781068830677284 1.180196172718381 1.0539694694740036 1.117367985271671 1.051688680875045 0.9925902499500187 1.066069090205148 0.8635386116077582 1.0 17.61392687671848 2.5953241103856812 0.6428841212286488 0.9631195494515135 1.160061429601786 0.6321262422551264 0.05473516555527174 0.5077869555363822 0.437681567625456 0.042883888670610805 0.0396618361484404 393.84388824876567 -2.5953241103856812 0.19694188015027247 DPLNPIKQDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DPLNPIKQDVK 11 1 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 93.011 0.0087263 500810000.0 402480.0 524090.0 490270.0 465080.0 432270.0 453190.0 473630.0 428110.0 526980.0 505930.0 False True 400313.0923997317 541534.0188309053 559295.7544967674 523959.0803142738 487317.0222349768 421862.04199451074 450718.707457696 460057.74209853105 397112.84017021995 473641.1142515355 0.8451823128410646 1.1433425066712306 1.180842916013713 1.1062364827476021 1.0288739882834126 0.890678679069388 0.9516038491927324 0.9713213829114701 0.8384256100692435 1.0 18.853434793478637 2.9390555279839536 4.397545174092966 0.9346090942892992 1.0813144874055969 0.32976467072156 0.09347743370378754 0.24708085168567473 9.60018329471787 0.02875862943807704 0.031421118615229886 869.0715398520391 -2.9390555279839536 0.1467053931162977 DPMYNEYLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPMYNEYLDR 10 0 Q7L5D6;Q7L5D6-2 Q7L5D6 GET4 Golgi to ER traffic protein 4 homolog 0 ; 93.058 0.021042 326020000.0 102534.0 137680.0 136222.0 137867.0 117062.0 118011.0 145687.0 120259.0 145152.0 140261.0 False True 101981.96833659835 142262.5955706825 155400.87353715033 155320.948064178 131969.15181916574 109853.17733801322 138639.563231614 129233.33724282858 109381.23453715096 131309.42289651642 0.7766538462130724 1.0834149783964715 1.1834708439745418 1.1828621635675363 1.0050242313772808 0.8365978230259024 1.0558234144466112 0.9841893627441803 0.8330036955790535 1.0 17.002610923632506 3.0033613119601776 24.93747536524281 0.9507336690062655 1.0708736162263728 0.15505447023816243 0.12386273719512193 180.8089707188236 1341393.6393007888 0.036634637709437375 0.04358435613058707 1007.7697357649483 -3.0033613119601776 0.12013994722010723 DPNDVRPIQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DPNDVRPIQAR 11 1 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 0 ;;; 147.26 3.2271e-05 3323270000.0 2587320.0 2855800.0 2808410.0 2739190.0 2668160.0 2837720.0 2810710.0 2606240.0 2990650.0 2841920.0 False True 2573390.156598274 2950853.5766324466 3203809.7168626827 3085971.1731445254 3007934.3605766636 2641555.095674357 2674745.219345105 2800730.8630185653 2253644.38015687 2660546.2325098803 0.967241284948698 1.1091156923248422 1.2041924615759463 1.159901352375039 1.1305702279561847 0.9928619406783968 1.0053368690465603 1.052690168956936 0.8470607849692763 1.0 21.343291042881958 2.7353322520003567 23.13950363457608 0.9907544289574167 1.1214595936315717 0.43740837166316693 0.07558282126876777 102.83267909802152 737055.084917071 0.024579247045958867 0.024091272214169304 543.6660979312563 -2.7353322520003567 0.13070516467415494 DPNNDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPNNDFR 7 0 Q9BRA2;I3L2R6 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 0 81.613 0.062176 504450000.0 1261200.0 1242400.0 1085500.0 1016900.0 1043500.0 1252600.0 1164200.0 1036200.0 1153100.0 1161200.0 False True 1254409.8393324926 1283752.5329533396 1238328.9646648585 1145639.4357348937 1176383.5396909288 1166010.7103032363 1107883.1983241122 1113526.5057169853 868933.9557483792 1087091.2218466634 1.1539140544264552 1.1809059876066368 1.1391214828883307 1.053857682512396 1.082138753445716 1.072596932870556 1.0191262481561842 1.0243174476429087 0.7993201842549182 1.0 20.05204157664791 2.5193885411332717 0.5762273085929779 0.9282160055259602 1.1651185365961596 0.6398876469978746 0.06129324001429597 0.5558850476678499 0.3811605936875277 0.05251269929906291 0.049741757685255114 330.6652380762429 -2.5193885411332717 0.23690253107019943 DPNNYRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPNNYRPR 8 1 P61221 P61221 ABCE1 ATP-binding cassette sub-family E member 1 0 ; 98.629 0.006736700000000001 161507000.0 133561.0 195785.0 188003.0 211622.0 217839.0 158265.0 213481.0 206643.0 278980.0 269710.0 False True 132841.92241602202 202301.58537046835 214472.18824862986 238413.3235019074 245579.50541708918 147324.5130657365 203154.1084533843 222063.74997189216 210229.11714047613 252496.87688965196 0.5261131307936041 0.8012043074056702 0.8494053110302828 0.9442228610459231 0.9726041305628272 0.5834706348867885 0.8045806782084208 0.8794712738919939 0.8326008611676888 1.0 17.94590601785104 7.99999999999999 0.050777271410391206 1.2604969108839816 7.380378512920525e-08 0.23682773104067867 0.129157245933742 861.0902298136065 3.2962563680198227 19.029998527621196 84.57742688821503 99999999.99999775 -7.99999999999999 -1.2604968370801966 DPNTKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPNTKR 6 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;A0A2R8Y4L2;F8W646;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ; 94.163 0.071825 1075850000.0 2203500.0 1946200.0 1748660.0 1652090.0 1832190.0 1419760.0 1896540.0 2018380.0 2595100.0 2321700.0 False True 2191636.600831863 2010978.0904972581 1994856.1283748066 1861244.4246073966 2065508.536259054 1321615.3329555502 1804797.114713636 2169001.7647259664 1955572.3775584213 2173527.1182926246 1.0083318410830153 0.9252141708160264 0.9177967514579851 0.8563244548195303 0.9503026297098043 0.6080509977688806 0.8303540818627384 0.9979179677453424 0.8997230175322525 1.0 21.05160666502401 -1.2094505518028829 5.155121173920062 1.000009387254015 0.8883350773643193 0.08868129352723264 0.10749464858127154 1.1948486578372724e-05 1.8325140220517767e-06 0.10723384341706868 0.025273135234905677 0.061737558145679945 1.2094505518028829 -0.11167430988969573 DPPDYWTIHGLWPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DPPDYWTIHGLWPDK 15 0 D6RHI9;O00584;H0YAE9;D6REQ6;A0A087WZM2;A0A087WWI1;O00584-2 D6RHI9 RNASET2 Ribonuclease T2 0 97.836 0.0038459 0.0 274400.0 229310.0 183750.0 178310.0 185320.0 248570.0 248250.0 206470.0 262560.0 210610.0 False True 272922.6608887059 236942.44472917783 209620.4028163683 200884.027717464 208919.40352230307 231386.94097084107 236241.19909290585 221877.83983341622 197855.6061237482 197168.6894877075 1.38420893093029 1.20172449969015 1.063152589597331 1.018843449431093 1.0595972619442102 1.1735481002183508 1.198167922638824 1.1253198487544303 1.003483903239533 1.0 17.589070943458644 4.6132024650338606 2.633690496099898 1.0933830465728998 1.40568537935947 0.6659133805854694 0.066029336384521 0.2369511421896411 2.5227409232322957 0.017677584613857177 0.14187901076649864 41039.538183816374 -4.6132024650338606 0.31230233278657016 DPPHNNFFFFDGMK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPPHNNFFFFDGMK 14 0 Q9UBE0;M0QZS6 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ; 151.8 6.839600000000001e-06 2299700000.0 1510570.0 1606730.0 1446870.0 1323010.0 1305240.0 1710180.0 1739810.0 1486680.0 2241560.0 1573810.0 False True 1502437.2589601052 1660209.036761203 1650576.7195805134 1490502.93034873 1471454.5772364053 1591959.2819306946 1655648.7435803758 1597623.6108080738 1689157.5733651326 1473368.0983934714 1.0197297339329732 1.1268121242556146 1.1202745066764146 1.0116297020235079 0.9987012606291988 1.0804898542777819 1.1237169756733971 1.0843343306741118 1.1464599886524984 1.0 20.490686479931124 2.4829870772659137 24.642221157138305 1.0962771930552884 1.0584674721139034 0.07375175430203107 0.05332979899456723 558.4560968795759 2346084.4536840026 0.01837671850358496 0.015840207763733124 304.07945433755157 -2.4829870772659137 -0.03780972094138502 DPQALSEHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 DPQALSEHLK 10 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;;;; 170.52 4.3014e-06 7494680000.0 5821630.0 5609820.0 5738900.0 5145770.0 4934280.0 6497480.0 6825010.0 6104570.0 7836990.0 6547630.0 False True 5790286.990923894 5796539.467492198 6546887.236586978 5797223.954392317 5562631.310231107 6048324.501022738 6494858.192229902 6560124.011778367 5905668.824785777 6129754.647691933 0.9446196991104919 0.9456397198009869 1.0680504543606992 0.9457513860811988 0.9074802549112846 0.986715594448816 1.0595625054381979 1.0702098842159176 0.9634429376401661 1.0 22.547397898437282 2.4113305960079097 6.111205317321551 1.0340385788850095 0.9645047795330334 0.25090962578023435 0.048164039572602235 0.25671858874387105 17.790898274598877 0.017450538715573036 0.014577413211297583 257.8283064840247 -2.4113305960079097 -0.06953379935197612 DPQALSEHLKNPVIAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPQALSEHLKNPVIAQK 17 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 244.88 9.2067e-21 6260400000.0 3724200.0 4337700.0 4386400.0 4147200.0 4239600.0 5390300.0 5581800.0 5289800.0 7274200.0 6031700.0 False True 3704149.3209975213 4482077.722304973 5003966.992727722 4672235.0947779985 4779487.929922056 5017681.248401349 5311787.0094533 5684551.737060129 5481570.879286148 5646751.7420018315 0.6559787804101977 0.7937444263692793 0.8861673438743677 0.8274199589871899 0.846413681403971 0.8885960420534673 0.9406801028532941 1.0066941131442229 0.970747631512285 1.0 22.428989774318616 6.4321645174474895 0.24087112889188014 1.0241143418855052 6.829539179361646e-22 0.8577634380423084 0.038455924920094746 9.015992545401266 0.2312794240363384 0.0597767246289678 3.168548658173138 2704982.8592729894 -6.4321645174474895 -1.0241143418855052 DPS(ph)KIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DPSKIK 6 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 DPS(1)KIK 60.91 0.07662200000000001 631990000.0 2315300.0 1440700.0 1140600.0 1083400.0 1052400.0 1395600.0 2030900.0 1704800.0 3049100.0 1782200.0 True False 2302834.68205401 1488652.828578458 1301186.5657270735 1220558.3289164952 1186416.9019364961 1299125.456889027 1932657.6082085923 1832020.832798993 2297690.160846743 1668458.4701818165 1.380216962669178 0.8922324739771529 0.7798735113768097 0.7315485226212958 0.7110856656846898 0.7786381741629192 1.1583492443764485 1.0980320250940094 1.3771335648506475 1.0 20.67008434598021 2.22854261372265 24.667733099810366 1.1589143310476981 0.8607057362384078 0.3168387219868588 0.19995072960875693 207.4837925626872 510891.2762894251 0.07615474269872634 0.056923733009641694 169.25543126334688 -2.22854261372265 -0.2982085948092903 DPS(ph)PESNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPSPESNK 8 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 DPS(0.994)PES(0.006)NK;DPS(0.965)PES(0.035)NK 115.82 0.002507 1180710000.0 2675900.0 1952740.0 1624780.0 1441410.0 1564230.0 1644590.0 2237000.0 2059300.0 3080000.0 2069600.0 True False 2661493.251720441 2017735.7704437438 1853534.9011590704 1623892.358208903 1763425.4185824066 1530903.364248444 2128787.7638301346 2212975.422913517 2320975.2698855344 1937516.3561262935 1.373662340090695 1.041403219159313 0.9566550988322347 0.8381309159400214 0.9101473714049312 0.7901370016350225 1.0987198931761553 1.142171221376398 1.1979126073164597 1.0 20.885777058705987 -0.05518886848436105 7.96691754755031 1.0000148525674586 1.0301889027762587 0.0024776596742441814 0.1666721079867078 0.0 8.86023132331702e-18 0.16929381325017087 0.03990293448610692 0.8806658007046331 0.05518886848436105 0.03017405020880015 DPS(ph)PESNKK ddPTM_BT-474_Trastuzumab_2h_R1 3 DPSPESNKK 9 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 DPS(1)PESNKK;DPS(0.985)PES(0.015)NKK;DPS(0.999)PES(0.001)NKK 102.62 0.0021774 1265030000.0 3446030.0 2101870.0 1841950.0 1630350.0 1719780.0 2152500.0 2666440.0 2748990.0 4350670.0 2551190.0 True False 3427476.9573699296 2171829.4723427533 2101280.54948359 1836752.1428364473 1938783.7890653256 2003702.741439977 2537454.110410021 2954133.592888377 3278505.6744912006 2388370.8700163555 1.435068983799178 0.9093351035251408 0.879796590999789 0.7690397525338556 0.8117599378743255 0.8389412074123378 1.0624204734135971 1.2368822740113838 1.3726953864869191 1.0 21.187595447295976 1.948219915976963 3.5072467681035415 1.223398707483445 0.9233161331251662 0.2608363520286373 0.1952211910314435 0.2951313118885116 6.878155257538398 0.0952569884946031 0.054769894657754385 88.76053596452338 -1.948219915976963 -0.3000825743582787 DPSEEIEILLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPSEEIEILLR 11 0 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3;Q5SVM6;B7Z3B5;F2Z2J1;Q15349;Q15349-3;Q15349-2 E9PGT3 RPS6KA1;RPS6KA2 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2 0 85.73100000000002 0.034891000000000005 14842000.0 13695.0 17178.0 15346.0 15566.0 15249.0 19739.0 15684.0 14082.0 18161.0 17176.0 False True 13621.267641657532 17749.759345679715 17506.583410176812 17536.654003982065 17190.86976209581 18374.48939060801 14925.305001301653 15132.870346947104 13685.464894932182 16079.812974886574 0.8471036113996603 1.103853594155682 1.0887305366995603 1.0906006202541523 1.0690963749979232 1.1427054169911839 0.9282014053653466 0.94110984814199 0.8510960243322555 1.0 13.972963006105296 2.213908316761069 24.358855333848506 0.9270068171883306 1.0626614194128599 0.3632445800543437 0.08207398737250132 173.76462831629738 171694.74100419608 0.02982758810812171 0.02204029785299146 163.6471012085167 -2.213908316761069 0.1356546022245293 DPSQQELPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPSQQELPR 9 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 121.64 0.001415 637140000.0 258560.0 272510.0 236310.0 243080.0 214016.0 244290.0 255880.0 221570.0 317530.0 279860.0 False True 257167.94168871662 281580.330614226 269580.3939566586 273853.9030764459 241269.6690277851 227402.80729680485 243502.10684347537 238104.6785096626 239278.98618401098 261999.09519979934 0.9815604191022167 1.0747377978519128 1.0289363547270185 1.0452475145672018 0.9208797795419634 0.8679526435898127 0.9294005639896648 0.908799621342528 0.9132817271813015 1.0 17.999202303936116 3.2340397352620878 23.686660854097934 0.9161361254349316 1.0353657619843506 0.665828379724609 0.0376820596166119 29.417090922431637 154127.96208866508 0.009993216087082396 0.012346557334581218 1714.11413118758 -3.2340397352620878 0.11922963654941898 DPSSDTYEEDSELLLQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPSSDTYEEDSELLLQIR 18 0 Q9UBE0;M0QZS6 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 72.265 0.031036 0.0 27960.0 25369.0 22313.0 17115.0 18711.0 25475.0 20821.0 23781.0 25394.0 18245.0 False True 27809.466466648046 26213.39182911564 25454.476451927254 19281.75724515952 21093.734941214167 23713.97321169964 19813.808686055967 25555.65897747115 19135.988962166615 17080.588479669634 1.6281328070018537 1.53468903371312 1.490257579955441 1.1288696093878645 1.2349536414580344 1.3883580908190292 1.160019088899635 1.49618141130729 1.1203354606279197 1.0 14.060070060718367 3.909772045947856 4.7470538071482835 1.2578940805864003 1.5679780996002672 0.5413118502773036 0.13835584240528842 0.17792767905458096 6.743804862588619 0.0350185053784856 0.06639443002623772 8124.039867036238 -3.909772045947856 0.31008401901386695 DPSVDITQDLVDESEEERFDDMSS(ph)PGLELPSCELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DPSVDITQDLVDESEEERFDDMSSPGLELPSCELSR 36 1 Q6IN85-2;Q6IN85;G3V5Z3;G3V231;H0YIY8;Q6IN85-5 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 DPSVDITQDLVDESEEERFDDMS(0.037)S(0.963)PGLELPSCELSR;DPSVDITQDLVDESEEERFDDMS(0.042)S(0.958)PGLELPSCELSR 209.83 7.8899e-31 122333000.0 50437.9 65018.0 58418.0 60896.0 58947.0 73775.0 63074.0 56545.0 63688.0 66002.0 True False 50166.347950577525 67182.08482578909 66642.74662164155 68605.42735619245 66453.55104375769 68675.10789766988 60022.86965392123 60764.6750296921 47992.94577547719 61789.695852844925 0.8118885723284842 1.0872700358614225 1.0785414251003014 1.1103053091502426 1.0754794974556916 1.111433014029117 0.9714058116885463 0.9834111366142025 0.7767143876185222 1.0 15.915078651636225 1.6630074237233723 2.2334974899198285 0.8924285213100475 1.0501919743574522 0.2431554094568218 0.09934319442812808 0.3392982253001822 3.6901439126699276 0.06757252275766971 0.02680967508612738 46.026444116159986 -1.6630074237233723 0.1577634530474047 DPTLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPTLYR 6 0 P07814;V9GYZ6;H0Y547;E9PEJ6;P98196 P07814 EPRS;ATP11A Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase;Phospholipid-transporting ATPase;Probable phospholipid-transporting ATPase IH 0 110.17 0.067304 301810000.0 196000.0 230700.0 209490.0 203630.0 208340.0 255970.0 220780.0 189040.0 271860.0 220150.0 False True 194944.7577776473 238378.71003890486 238984.37108027804 229409.53712134567 234870.86407207308 238275.3963885672 210100.02793849647 203147.12472566962 204863.74573736405 206099.83852010235 0.945875354281915 1.1566176458486364 1.1595563237521325 1.113099062903777 1.139597516225926 1.1561163662208622 1.019408988610168 0.9856733813299677 0.9940024563259532 1.0 17.65298384895814 2.1208108186703094 5.388867810321784 0.994380359815176 1.1170255246573884 0.4647547159265347 0.05912116123157831 0.17535630261899088 7.589497253699231 0.022218551417050876 0.016247034468252135 132.07201950772065 -2.1208108186703094 0.12264516484221233 DPTSLLGVLQAEADS(ph)TSEGLEDAVHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DPTSLLGVLQAEADSTSEGLEDAVHSR 27 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 DPTSLLGVLQAEADS(0.489)T(0.489)S(0.022)EGLEDAVHSR 122.11 5.9117e-05 48469000.0 20769.0 15403.0 13810.0 15599.0 19630.0 19989.0 15355.0 16616.0 23687.0 15993.0 True False 20657.182011652832 15915.679543689885 15754.327961328163 17573.8318005985 22129.7641438744 18607.207479044708 14612.219988203702 17855.970294338364 17849.65623953851 14972.313047703828 1.379692098731588 1.0630073985883386 1.0522307348993258 1.1737553005074017 1.4780457817951012 1.2427744076522853 0.975949403518827 1.192599315646608 1.1921776002590299 1.0 13.870009497717513 0.02526909830202024 0.4562856107758115 0.977971707322977 1.2045091390985432 0.15199766814480398 0.14170520171160883 8.811421263484418 2.3903189416011923 0.5305804318154871 0.08427730795380561 1.0599102651945222 -0.02526909830202024 0.22653743177556618 DPTSLLGVLQAEADSTSEGLEDAVHSR ddPTM_BT-474_Trastuzumab_2h_R1 6 DPTSLLGVLQAEADSTSEGLEDAVHSR 27 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 ;;;;; 272.35 8.7472e-61 747352000.0 250051.0 272756.0 252648.0 253542.0 250514.0 265772.0 253029.0 227951.0 270724.0 258733.0 False True 248704.7531992776 281834.5185755164 288218.64234421676 285640.39120375336 282415.47298719065 247399.80719999367 240789.0206053533 244961.8611317238 204007.69771574388 242220.43842753395 1.0267703040001044 1.1635455719804337 1.189902240353034 1.1792580058813225 1.1659440252878661 1.021382872585334 0.994090433361143 1.0113178835030885 0.842239816921055 1.0 17.885961078420284 2.563714169761502 2.531179352155361 0.9682658159628368 1.151156521006427 0.6639405133455916 0.061724117697787226 0.18005500185598663 2.2784143409222617 0.022922559585493742 0.020496342755380315 366.1964836729433 -2.563714169761502 0.18289070504359017 DPTVHDDVLELEMDELNR ddPTM_BT-474_Trastuzumab_2h_R1 10 DPTVHDDVLELEMDELNR 18 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;;;;;;;; 343.34 8.603699999999997e-76 6256560000.0 3610517.0 3808499.0 3817745.0 3640521.0 3822673.0 4143286.0 3751856.0 3780648.0 4493233.0 4181791.0 False True 3591078.3776381477 3935262.5869287397 4355250.311565587 4101410.5853289724 4309467.747791997 3856870.3910661456 3570364.3917982457 4062779.1515015494 3385935.9333875277 3914905.5181686045 0.9172835362111259 1.0051998876258088 1.112479034641678 1.047639736462303 1.100784610967564 0.9851758549898267 0.9119924798257877 1.037771954558464 0.8648831798555054 1.0 21.90054605944217 2.4928825223024833 23.726596483973687 0.9619710782585204 1.0400719881294247 0.25471464885811546 0.06662959788538575 537.8259470852233 809630.6807235416 0.021999037991745875 0.02015155658804698 311.0874724218362 -2.4928825223024833 0.07810090987090434 DPTVHDDVLELEMDELNRHECMAPLTALVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DPTVHDDVLELEMDELNRHECMAPLTALVK 30 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 88.001 0.00077562 173883000.0 42404.0 54901.0 54969.0 65208.0 50954.0 65096.0 62886.0 46940.0 98447.0 73958.0 False True 42175.70157552729 56728.34659664465 62708.15740088688 73463.32611407309 57442.68987198044 60596.06673950141 59843.96393215099 50442.90115649033 74186.05597221454 69237.93712137057 0.6091415101174293 0.8193246210845762 0.9056907240168446 1.0610270780496482 0.8296418446333306 0.875185906149682 0.8643233236028909 0.7285442526698405 1.07146542858679 1.0 16.0792751211647 4.692437450126779 2.623962854901823 0.8957484088233946 0.5668148144775601 0.4489495776778518 0.10155309997734135 0.4152442314456135 4.007039111720825 0.025775066310274913 0.28572446996377193 49253.54001375165 -4.692437450126779 -0.32893359434583447 DPVQEAWAEDVDLR ddPTM_BT-474_Trastuzumab_2h_R1 10 DPVQEAWAEDVDLR 14 0 P14618;P14618-3;B4DNK4;P14618-2;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;; 243.88 3.427e-17 32159310000.0 2863742.0 3214620.0 2935830.0 2975200.0 3030030.0 3436748.0 3457666.0 2959865.0 3330937.0 3276063.0 False True 2848323.931263645 3321616.6834211736 3349169.3453081897 3351860.014945874 3415886.360105133 3199173.6999945967 3290405.4860131787 3180745.156189926 2510072.208619061 3066981.8545613526 0.9287058307917572 1.08302456321387 1.0920082035461525 1.0928855056513744 1.1137615160731629 1.043101606628889 1.07284804477064 1.0370929164316312 0.8184176912836864 1.0 21.548388200418252 1.3847388359486903 6.688557338452756 0.9104079740711006 1.0640751494775738 0.4727073535916725 0.06312894882333463 0.1659150783739884 9.57250260086267 0.04031632365295245 0.014718652569493179 24.251512858264373 -1.3847388359486903 0.15366717540647312 DPWDAVLLEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DPWDAVLLEER 11 0 O00443;A0A0C4DGF9;O00443-2 O00443 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 0 93.058 0.022178 24007000.0 12920.0 17157.0 14594.0 16379.0 14908.0 15266.0 14272.0 20660.0 14808.0 17344.0 False True 12850.44015554695 17728.060373374476 16648.708346678002 18452.57972062329 16806.445433361165 14210.697352298595 13581.608835665473 22201.754109354282 11158.766817034073 16237.09107105453 0.791425021841204 1.0918249023667705 1.02535043215698 1.1364461552795166 1.035065047046611 0.875199707269713 0.8364557897859598 1.3673480066224923 0.6872392824676913 1.0 13.987005571600394 4.749025623208137 23.558467857563777 1.026761852346924 0.791424719965389 0.1090455074849469 0.17536047899148813 1333.056294257359 3000793.27983814 0.04072977530141734 0.5449274675975156 56108.10786247368 -4.749025623208137 -0.23533713238153497 DQAAKGDEVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQAAKGDEVTR 11 1 Q9H074;Q9H074-3;Q9H074-2;D6REB4;D6RJ02;D6RJF2 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 0 66.98899999999999 0.055817 193190000.0 310060.0 320000.0 242130.0 240130.0 252220.0 279640.0 295750.0 284560.0 450100.0 298380.0 False True 308390.6714109047 330651.00655591534 276219.7993683116 270530.43337891623 284338.72197493655 260309.14500175396 281443.4426252848 305795.3121664016 339178.8860309989 279337.1329440298 1.104008866134873 1.183698719432934 0.9888402463973781 0.9684728647699046 1.0179052064370866 0.9318816379987388 1.0075403855515228 1.094717730305026 1.2142277056268043 1.0 18.091647841657803 -0.5577132129875864 8.080641113780713 1.0000002909459054 1.0520217756283392 0.03397422314608711 0.0875920638810177 0.0 0.0 0.08900606088791425 0.020978929740182308 0.27687694028912757 0.5577132129875864 0.05202148468243384 DQDELKPGPTNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQDELKPGPTNR 12 1 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 103.83 0.0020094 304010000.0 326000.0 369920.0 315280.0 344600.0 373280.0 334680.0 301290.0 310450.0 364930.0 309140.0 False True 324244.8522220049 382232.5635786375 359668.6835371136 388226.32466736564 420814.9953960999 311544.3593519779 286715.4516604292 333617.35543315765 274997.8913114698 289410.42053193046 1.1203634327542507 1.3207284066555096 1.2427634183871124 1.3414386529476499 1.4540423065024768 1.0764794121074344 0.990688072438622 1.1527482487326328 0.9502003791225944 1.0 18.142757343020634 2.6045902983185028 7.110756024638967 1.0455725178233364 1.296294676513462 0.6631552810832297 0.09334999711399529 0.16509248033285104 8.83149529550338 0.03027496089232097 0.02848302211736933 402.33730109811876 -2.6045902983185028 0.2507221586901256 DQDELNPYAAWR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQDELNPYAAWR 12 0 O43615;M0QXM9 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 0 ; 169.82 9.9576e-05 237050000.0 125740.0 140150.0 135619.0 119604.0 155238.0 250720.0 138988.0 118858.0 188920.0 162247.0 False True 125063.02981102733 144814.80802753606 154712.97637852037 134745.85413672568 175006.639132286 233388.31653139685 132264.61945427908 127727.78750869476 142363.19739830348 151892.2575533547 0.8233667194464922 0.9534048039062651 1.0185705240714777 0.8871146976625451 1.1521761671809507 1.5365385984168107 0.8707792061607809 0.8409104556486577 0.9372643457372805 1.0 17.212688807252054 4.898035856381143 1.2287284728103327 1.0280438653563118 0.6719250993974406 0.1026470138982406 0.1902591307112752 5.816395412269343 5.854374409990313 0.05942490630642254 2.8769400488852868 79074.39109951623 -4.898035856381143 -0.35611876595887115 DQDGYYWITGR ddPTM_BT-474_Trastuzumab_2h_R1 7 DQDGYYWITGR 11 0 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ;;;;;; 231.07 3.1067e-12 8564564000.0 3266250.0 3460800.0 3420507.0 3354760.0 3131568.0 3818980.0 4011961.0 3386876.0 4172620.0 3649820.0 False True 3248664.8729144884 3575990.6359022222 3902084.6540201856 3779472.2720287107 3530354.622542257 3554982.9015119383 3817887.119250648 3639621.885327853 3144333.711243433 3416885.362831891 0.9507678859386776 1.046564416471516 1.142000459385083 1.1061162054603757 1.0332083894135458 1.0404162048227432 1.117358855752307 1.0651870047847785 0.920233890620618 1.0 21.70425041520424 1.2531686569204967 24.529905596138853 0.9601169769177715 1.067093233536643 0.36795372089107925 0.053533481771518523 165.10158153013225 277242.9203266215 0.03645008208174548 0.013173842316516507 17.913013653285567 -1.2531686569204967 0.10697625661887145 DQDILDLVGVLHDPETLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQDILDLVGVLHDPETLLR 19 0 F5H345;A0A3B3IRR1;A0A3F2YNY7;P08397-2;P08397 F5H345 HMBS Porphobilinogen deaminase 0 ; 134.07 1.0446e-05 45046000.0 60985.0 52857.0 51390.0 49212.0 49332.0 57493.0 53220.0 50682.0 59500.0 52632.0 False True 60656.663536070475 54616.313292268766 58625.26531011254 55442.23415417999 55614.1377863277 53518.644233964566 50645.54527985684 54464.148197981325 44837.0222591523 49272.980699477754 1.2310329652273986 1.1084434616484984 1.1898055380021675 1.1252056069497665 1.128694408108279 1.086166159915952 1.0278563334487623 1.105355256061434 0.9099717862132 1.0 15.588509127641272 2.3728178162600373 0.5028012520739777 0.9768673128588342 1.1870100572937707 0.6728612512613574 0.050363404218058 0.5938538646799105 0.3143779304516323 0.04531264337907604 0.044171325480377326 235.94882354175738 -2.3728178162600373 0.21014274443493652 DQDLASCDRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQDLASCDRDR 11 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 116.03 0.00095239 180710000.0 193460.0 234330.0 216630.0 215750.0 205170.0 227470.0 190470.0 196940.0 296230.0 226840.0 False True 192418.43285542648 242129.53239452356 247129.62101828502 243063.92787865418 231297.1833621354 211745.53430678364 181256.23843394063 211636.66284105662 223228.08577863337 212362.87699250533 0.9060831892111598 1.1401688271677952 1.1637138492289623 1.1445688216365253 1.0891601518955607 0.9970929820952488 0.853521298076676 0.9965803149696717 1.0511634092549589 1.0 17.69617206609823 2.7002858369047007 4.215994941864232 0.9684543177256206 1.09961888463738 0.3021830359505516 0.08206624776610857 0.244193254930928 9.847571434389588 0.02734935103013631 0.026457764512654004 501.5172054952157 -2.7002858369047007 0.13116456691175937 DQDLTQEIAMEHFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DQDLTQEIAMEHFVK 15 0 Q9ULX6;Q9ULX6-2 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 0 ; 218.34 1.9512e-12 1409380000.0 1009220.0 997400.0 897000.0 804320.0 868090.0 1109620.0 1098770.0 956480.0 1314840.0 1006630.0 False True 1003786.4716548831 1030597.8560589676 1023289.8031362327 906146.8295312119 978636.1159274537 1032914.581164521 1045618.297390987 1027857.3945070279 990815.2999533407 942386.0115806976 1.065154256663038 1.093604789750974 1.0858499495549943 0.9615452886565024 1.0384663013895468 1.0960631508440757 1.109543525202729 1.0906967865354518 1.0513900755927084 1.0 19.845958598947995 2.745714392460362 24.76772600131751 1.0796743262139636 1.048603432109486 0.02694461864096731 0.0444954960560414 1273.8200223031458 4410188.420109695 0.01420433892067676 0.014778993729249268 556.8194441731341 -2.745714392460362 -0.03107089410447772 DQDS(ph)SDDERALEDWVSSETSALPRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ9;Q5TAQ8;V9GY54;Q5TAQ9-2 Q5TAQ9 DCAF8 DDB1- and CUL4-associated factor 8 1 DQDS(0.577)S(0.423)DDERALEDWVSSETSALPRPR;DQDS(0.5)S(0.5)DDERALEDWVSSETSALPRPR;DQDS(0.5)S(0.5)DDERALEDWVSSETSALPRPR 154.66 3.1581000000000003e-08 129831000.0 87632.0 109582.0 100785.0 119515.0 108701.0 117499.0 119647.0 102040.0 156817.0 128092.0 True False 87160.19904883041 113229.3706262821 114974.65196107602 134645.5867458508 122543.42802869559 109376.5706928949 113859.21751407404 109654.74294862106 118171.55159014271 119917.05889492149 0.7268373645254709 0.9442307180457158 0.9587847885914521 1.1228226241258579 1.0219015472692294 0.9121018452323552 0.9494830724112765 0.914421550687856 0.9854440450686145 1.0 16.871677379498458 4.76242382895737 2.8161697308719753 0.9782058757209425 0.6725656713357867 0.6385740442808377 0.057437241445509546 0.3369061415182921 3.5238335281857447 0.0156909622878036 0.24312546075188335 57866.048800749224 -4.76242382895737 -0.3056402043851558 DQECDKFNQCGTCNEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQECDKFNQCGTCNEFK 17 1 Q9UBR2 Q9UBR2 CTSZ Cathepsin Z 0 202.96 9.2229e-12 478640000.0 402150.0 349260.0 316720.0 314240.0 353890.0 428340.0 387480.0 378160.0 491390.0 436200.0 False True 399984.86908306484 360884.9079678718 361311.42302040907 354022.751780247 398955.7938296343 398729.86400390277 368736.112082655 406380.2194575714 370293.5187886534 408361.3425503911 0.9794875944549217 0.8837391554107236 0.8847836104266501 0.8669350276135925 0.9769675830184731 0.9764143234363576 0.9029652752626888 0.9951486027535155 0.906779070898367 1.0 18.639486774661997 3.2287902901893504 24.99794044197541 0.9587981078781378 0.9009542067765188 0.3011748892764261 0.04167175402811882 236.8329430678821 605950.2454569099 0.011565681466042496 0.013986218375022107 1693.5198451184453 -3.2287902901893504 -0.057843901101618966 DQELYFFHELSPGSCFFLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DQELYFFHELSPGSCFFLPK 20 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ; 235.03 1.5699e-29 966700000.0 1098200.0 997600.0 871810.0 737340.0 890110.0 949820.0 748830.0 902640.0 1220050.0 992600.0 False True 1092287.4132214915 1030804.5129380662 994553.2700916372 830687.1683988257 1003460.2324046902 884161.179035782 712606.2320916048 969999.580313046 919385.025332416 929251.4181923858 1.1754487449115216 1.1092848423553932 1.0702736101563115 0.8939315583878356 1.079858704285497 0.9514768142680751 0.7668605268074735 1.043850524543643 0.9893824290533101 1.0 19.825709459318368 4.090354427053181 1.9931732456070121 0.9596557443551771 1.15929551970449 0.44329735021869454 0.08288034718645232 0.31784248076275684 2.448905723742718 0.022716461624945835 0.07225863792446335 12312.732010495829 -4.090354427053181 0.199639775349313 DQFLDTLQAHGHDVNSFVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQFLDTLQAHGHDVNSFVR 19 0 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 0 245.61 7.866099999999998e-25 112830000.0 56578.0 65069.0 63843.0 66424.0 64843.0 70808.0 67888.0 33177.0 82532.0 65678.0 False True 56273.390334406715 67234.78232995878 72831.53946669612 74833.27158939377 73100.3716954277 65913.2096241031 64603.99808265535 35652.836209392415 62193.09447214042 61486.37381023524 0.9152172562344089 1.0934907714262803 1.1845151202358322 1.2170708232095606 1.1888873447153774 1.0719970220968038 1.0507043118535824 0.5798493877591057 1.0114939395204265 1.0 15.907979105212334 1.9536179645910157 11.696679975759968 0.8164931744165198 1.117537026376332 0.3793566901349359 0.13811953953496695 0.9939932763572642 249.221599096059 0.05653353502987668 0.036269514502915566 89.87066692795673 -1.9536179645910157 0.3010438519598122 DQGELER ddPTM_BT-474_Trastuzumab_2h_R1 4 DQGELER 7 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;; 125.81 0.0093352 2672760000.0 3211310.0 3340660.0 3121280.0 3033270.0 3007940.0 3351640.0 3491670.0 3056690.0 4193460.0 3498340.0 False True 3194020.663770082 3451851.848628389 3560729.0933478936 3417281.6709918203 3390983.3295428227 3119949.0157119124 3322764.5826252834 3284795.729357313 3160037.972485123 3275072.946120439 0.9752517627290197 1.0539770885767163 1.0872213083271427 1.043421544255934 1.0353916951864195 0.9526349693699854 1.0145620074085184 1.0029687226504043 0.9648755995582989 1.0 21.643095609664094 2.906076086528884 7.721719913587777 0.9908603176643125 1.0437496894987452 0.40898953082065204 0.031010842962362815 0.29500538364058687 21.583287335730578 0.009572322363377258 0.010175675167173916 805.519552405303 -2.906076086528884 0.05288937183443276 DQGGELLSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DQGGELLSLR 10 0 B3KWE1;P12081-4;P12081;P12081-3;P12081-2;A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590;D6RJE6;A0A2R8Y6I1;A0A2R8Y5E8;A0A2R8Y4X6 B3KWE1;A0A2R8Y3N3 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial 0 ;; 133.75 0.00043927 197282000.0 193197.0 235013.0 224239.0 238041.0 207099.0 240684.0 224227.0 200928.0 269954.0 250854.0 False True 192156.84881820463 242835.2656366414 255809.90207967133 268176.9661931065 233471.8300780562 224046.0815891941 213380.2833796777 215922.2676517106 203427.45389827216 234844.28295308567 0.8182308992235139 1.0340267286180949 1.0892745561567445 1.1419352552290132 0.9941559025505269 0.9540197392582527 0.9086032697772942 0.9194273964712393 0.8662227214571385 1.0 17.841344947506112 2.692058476719449 2.797621443381028 0.9185123025883535 1.0294820833864151 0.20630564383197325 0.08437211630488575 0.3882052962138718 6.0389334548317315 0.02988098900534635 0.028944847165518744 492.10579209563605 -2.692058476719449 0.11096978079806163 DQGGFGDRNEYGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DQGGFGDRNEYGSR 14 1 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ;;;; 241.8 1.7058e-17 7652980000.0 2175461.0 2694780.0 2686440.0 2685020.0 2479386.0 2650153.0 2782520.0 2465286.0 3222160.0 2713088.0 False True 2163748.559692441 2784474.123271093 3064667.401044926 3024943.256698694 2795121.110627826 2466954.1608991353 2647918.8773413575 2649258.1597886523 2428101.842731935 2539936.401048503 0.8518908421483432 1.0962771044667272 1.2065921807253956 1.1909523622126825 1.1004689367316367 0.9712661151203471 1.042513850444554 1.0430411402013926 0.9559695438553494 1.0 21.27636094228986 2.758100913691492 22.257535542722792 1.0116525428756262 1.1017981504158358 0.16616220666974468 0.09392618529993682 368.76666702013074 420044.31225326366 0.02990192108065156 0.03165055517041073 572.9291426888423 -2.758100913691492 0.09014560754020962 DQGSTYS(ph)GDLESEAVSTPHSWEEELNHYALK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQGSTYSGDLESEAVSTPHSWEEELNHYALK 31 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 DQGS(0.035)T(0.18)Y(0.006)S(0.779)GDLESEAVSTPHSWEEELNHYALK 98.342 0.00049388 44437000.0 15421.0 16494.0 14356.0 11178.0 12173.0 21967.0 15459.0 12053.0 18150.0 14235.0 True False 15337.97504943416 17042.99281916646 16377.200015411088 12593.133653893843 13723.159394976212 20448.47299475587 14711.189110885132 12952.45606389386 13677.175697539746 13326.510112803355 1.1509371110369175 1.2788789169035724 1.2289188900008265 0.9449686037303251 1.029763927601104 1.5344207014190563 1.1039040968986664 0.9719315825566271 1.026313384507133 1.0 13.70201140287615 1.9984261174864395 24.99975586417663 1.006701632151543 1.1926882973545196 0.261171797867108 0.1472459039194089 86.8969394273066 1380297.0895632347 0.05826972372761416 0.042415551046613514 99.63825603430364 -1.9984261174864395 0.1859866652029767 DQGSTYSGDLESEAVS(ph)TPHSWEEELNHYALK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQGSTYSGDLESEAVSTPHSWEEELNHYALK 31 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 DQGSTYSGDLESEAVS(0.617)T(0.375)PHS(0.009)WEEELNHYALK 140.94 4.1306e-08 63610000.0 22534.0 26487.0 24235.0 23033.0 22330.0 26106.0 22021.0 21404.0 29930.0 27730.0 True False 22412.679447762755 27368.603783270384 27647.07734560377 25948.975438373316 25173.59313972062 24301.353666913845 20955.7601016108 23001.275167309745 22554.152541452586 25960.247659152596 0.8633461337515745 1.0542504887707131 1.064977411178759 0.9995657891662946 0.9696977267027485 0.9360986838793163 0.8072249686039723 0.8860190961699231 0.8687957386839817 1.0 14.664016526173365 2.668094144781384 2.507540400434841 0.8789552506435578 1.001663395832939 0.3054155073710776 0.06870364059723685 0.28963942669735876 3.5857869117412355 0.023690425993463823 0.022560307236305137 465.68703252652784 -2.668094144781384 0.12270814518938122 DQGSTYSGDLESEAVSTPHS(ph)WEEELNHYALK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQGSTYSGDLESEAVSTPHSWEEELNHYALK 31 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 DQGSTYSGDLESEAVS(0.089)T(0.045)PHS(0.866)WEEELNHYALK 184.78 3.9839e-18 40695000.0 75198.0 75311.0 75960.0 80018.0 73046.0 89695.0 94102.0 70260.0 98294.0 92081.0 True False 74793.14232328314 77817.68110853921 86654.50774384408 90148.27059556951 82347.97512243768 83494.59576931887 89549.92675545065 75503.15797305101 74070.76077211964 86204.3117454897 0.8676264656471363 0.9027121675571027 1.0052224301689634 1.0457512944564071 0.9552651538540496 0.9685663521777076 1.0388102977939035 0.8758628941434756 0.8592465883934756 1.0 16.395472411024663 -1.6662174849126794 6.987217924522297 1.0002349315737207 0.9495161392455678 0.05452405448200781 0.06572954222604907 0.00025318938764077323 1.2094956970010879e-05 0.06698594648649062 0.01571582035463401 0.021566641297756053 1.6662174849126794 -0.050718792328152906 DQGTYEDYVEGLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DQGTYEDYVEGLR 13 0 F8VPF3;H0YI43;P60660;F8W1R7;J3KND3;G3V1V0;B7Z6Z4;G3V1Y7;P60660-2;G8JLA2;F8VZU9;F8W180 F8VPF3;P60660;P60660-2 MYL6 Myosin light polypeptide 6 0 ;;;;; 249.25 3.6969e-17 6817870000.0 4623480.0 4508290.0 4341520.0 3976390.0 4148820.0 4938460.0 4606260.0 4311000.0 5010520.0 4702760.0 False True 4598587.697396914 4658345.707331146 4952768.27883167 4479800.566291551 4677147.6350172665 4597075.8840844 4383437.606178006 4632708.710814443 3775744.483528204 4402625.830564604 1.0445102251188079 1.058083490763908 1.1249578023296416 1.0175292515641852 1.0623541075298368 1.0441668361117253 0.9956416408922634 1.0522603757631461 0.8576119408821059 1.0 22.06993280734711 1.2609498203828693 24.906824327798677 0.9288059932256854 1.0492955204851881 0.5392597632102598 0.044783424994143596 135.8169400696868 151089.92104371442 0.02836240247124355 0.010339645562025998 18.23684976407457 -1.2609498203828693 0.1204895272595028 DQHDTFFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQHDTFFLR 9 0 K7ER00;Q9Y285;Q9Y285-2;K7EPH2;K7ERS0 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 153.97 7.6815e-05 245670000.0 13593.0 19491.0 13122.0 16733.0 17677.0 16524.0 18144.0 9320.3 17846.0 14763.0 False True 13519.816798324277 20139.74615244168 14969.463541531353 18851.39608432686 19928.061170212317 15381.734773312048 17266.305403189053 10015.828113524436 13448.09242414844 13820.812700759816 0.97822154825823 1.457204188241005 1.0831102240976314 1.3639860761075564 1.441887796447509 1.112939962819004 1.2492974021882097 0.7246916900171727 0.9730319566091157 1.0 13.754554832097819 1.7543163750618471 24.99999999999999 0.8804744166564997 1.2507336438373593 0.48314479093123575 0.1613899803482144 4.053787736445293 6440.0489467411735 0.06990047270974391 0.038763533479564176 56.795820121710115 -1.7543163750618471 0.3702592271808596 DQHDTFFLRDPAEALQLPMDYVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQHDTFFLRDPAEALQLPMDYVQR 24 1 K7ER00;Q9Y285;Q9Y285-2;K7EPH2;K7ERS0 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 ; 160.69 1.2159e-11 397300000.0 216949.0 309970.0 301050.0 339490.0 327950.0 337780.0 314050.0 85128.0 333800.0 285340.0 False True 215780.9706893 320287.1640691778 343435.2232264908 382469.3991913061 369712.48858806014 314430.06364859256 298858.201712496 91480.68363122511 251539.46269084117 267129.35690813523 0.8077770754470325 1.1989965003334446 1.28565136831665 1.4317759890495145 1.3840204343965192 1.1770704174484419 1.1187770792832485 0.34245836807328134 0.9416391579056009 1.0 18.02717900802288 1.9281526458606668 8.13953095159664 0.6961666089310401 1.2274009119653726 0.4309696043309442 0.2295379048019596 0.2602487740787893 27.106946097589407 0.09700658859343045 0.060965679951343145 84.75252500413019 -1.9281526458606668 0.5312343030343325 DQHFDQNLNFMYIEVDKVTER ddPTM_BT-474_Trastuzumab_2h_R1 1 DQHFDQNLNFMYIEVDKVTER 21 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 186.06 2.0252e-17 58554000.0 63747.0 68116.0 62169.0 66963.0 67932.0 76237.0 76509.0 24656.0 95533.0 66793.0 False True 63403.79323495752 70383.19988300842 70921.85481736508 75440.50893412897 76582.73753549042 70966.91563259446 72807.96737723718 26495.955920631146 71990.17222661512 62530.21355563577 1.0139705212831953 1.125587070326979 1.1342013849714891 1.2064649174275788 1.224731744556598 1.1349220096530168 1.1643646045196512 0.4237304562706567 1.1512862044291985 1.0 15.93226582395555 DQHHLGS(ph)PS(ph)RLSVGEQPDVTHDPYEFLQS(ph)PEPAASAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQHHLGSPSRLSVGEQPDVTHDPYEFLQSPEPAASAK 37 1 Q9H8M2;Q9H8M2-3;Q9H8M2-1;Q9H8M2-6;Q9H8M2-2 Q9H8M2 BRD9 Bromodomain-containing protein 9 3 DQHHLGS(0.606)PS(0.606)RLS(0.606)VGEQPDVT(0.179)HDPY(0.181)EFLQS(0.82)PEPAAS(0.002)AK 44.534 0.040409 188790000.0 19855.0 32531.0 27875.0 36634.0 40671.0 29149.0 30805.0 15864.0 33561.0 22736.0 True False 19748.102886097877 33613.774669595245 31799.557706156585 41271.86064383135 45850.210774096595 27133.99823936536 29314.844463472185 17047.852235759754 25290.34124435986 21284.969014731087 0.9277957074981147 1.5792259150732864 1.4939912613520119 1.9390143633879646 2.1541121691257423 1.2747962292351107 1.377255679497758 0.8009338526150134 1.1881784383550993 1.0 14.377547369489303 2.1456434166684777 2.1854504080124397 0.9941683647857815 1.6198209165687298 0.3698357854804839 0.3269274269342752 0.3216650579939362 3.039393543659292 0.16803057891460546 0.10336683682317772 139.84386441914296 -2.1456434166684777 0.6256525517829483 DQHHLGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DQHHLGSPSR 10 0 Q9H8M2;Q9H8M2-3;Q9H8M2-1;Q9H8M2-6;Q9H8M2-2 Q9H8M2 BRD9 Bromodomain-containing protein 9 1 DQHHLGS(0.982)PS(0.018)R;DQHHLGS(0.935)PS(0.065)R;DQHHLGS(0.982)PS(0.018)R 126.71 0.00024187 1262579000.0 919020.0 1024720.0 986020.0 1026900.0 843720.0 968350.0 997940.0 172347.0 960300.0 699659.0 True False 914072.0984327198 1058827.1857436798 1124843.0453605216 1156905.434709572 951162.7408797621 901410.2437507102 949665.8296989901 185208.40830033293 723646.9323607393 655006.1636117935 1.3955167893266855 1.6165148430133267 1.7173014665358006 1.766251218660657 1.4521431915005512 1.376185895381825 1.4498578524244763 0.2827582679208214 1.1047940806700982 1.0 19.321148956919465 1.8759600140422112 7.054061125411839 0.7379708691820341 1.5559081005701048 0.6762577477634678 0.23546079594602623 0.12933425327417325 6.856101397480004 0.1000764621466237 0.061747800780253666 75.15536944795528 -1.8759600140422112 0.8179372313880706 DQHLNNSS(ph)SSPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQHLNNSSSSPQR 13 0 A0A4W8VX11;A0A5H1ZRS1;E7EV93;E9PGW9 A0A4W8VX11 PCM1 1 DQHLNNS(0.024)S(0.407)S(0.285)S(0.285)PQR 73.138 0.024249 13374000.0 17260.0 14842.0 14303.0 13221.0 14893.0 17916.0 16884.0 11507.0 19019.0 15700.0 True False 17167.074077766272 15336.006997821542 16316.738076095342 14894.777244420335 16789.535272273133 16677.5090897276 16067.256416856499 12365.71077136204 14332.022291543166 14698.012558553748 1.167986080388509 1.0434068508736238 1.1101322720397018 1.0133871627257576 1.1422996956484561 1.1346778364277454 1.0931584357305435 0.8413185607305536 0.9750993363522752 1.0 13.843333468912874 1.7585823621124754 24.999999999988674 0.9257789898990278 1.0984250569638974 0.6188211935584563 0.05794484150935046 5.119114164221047 6397.732426426189 0.025332214031731907 0.014048205782008584 57.35646303396915 -1.7585823621124754 0.1726460670648695 DQHLNNSSSS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DQHLNNSSSSPQR 13 0 A0A4W8VX11;A0A5H1ZRS1;E7EV93;E9PGW9 A0A4W8VX11 PCM1 1 DQHLNNSS(0.003)S(0.033)S(0.964)PQR;DQHLNNSS(0.039)S(0.039)S(0.922)PQR;DQHLNNS(0.002)S(0.33)S(0.179)S(0.489)PQR 213.36 4.2235e-09 591960000.0 301197.0 323451.0 314808.0 310986.0 303017.0 375314.0 371769.0 151946.0 390879.0 377340.0 True False 299575.38881813263 334216.8710047415 359130.23003981117 350356.795713887 341604.41882752924 349369.4265741246 353785.11317450355 163284.98208615425 294552.1079602552 353257.8381429729 0.8480360701774052 0.9460989535622845 1.0166235289433594 0.9917877478831432 0.9670115760864527 0.9889927097179524 1.0014926067438517 0.4622260696168006 0.8338161992630495 1.0 18.430362046105845 1.7786731226106522 24.99999999934806 0.7082326330731991 0.9688710157558273 0.2916778093536313 0.13446797001213134 49.430864180744244 30819.39866483829 0.05828306347057874 0.032383115341330794 60.072142649235616 -1.7786731226106522 0.2606383826826283 DQHSFELDEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DQHSFELDEK 10 0 Q6DD88;F5H6I7;F5GWF8 Q6DD88 ATL3 Atlastin-3 0 ;;; 221.09 5.5361e-09 1603760000.0 3109620.0 3451640.0 3347560.0 2625390.0 3635840.0 5032200.0 3516460.0 1199980.0 4494500.0 3023620.0 False True 3092878.1514312574 3566525.7508395608 3818867.350486874 2957764.1048126994 4098842.6726879454 4684335.858524622 3346355.395618286 1289528.6009749742 3386890.6982144592 2830649.9829486795 1.0926388532888887 1.2599670649227785 1.3491132331764917 1.044906336929586 1.44802172553252 1.654862270765446 1.1821862172208228 0.4555591856085563 1.1965063567083436 1.0 21.43270193669459 1.9818061547852255 24.338412096166095 0.822364393254473 1.3119827189003772 0.38132711764365834 0.23784059891417883 457.5434575492518 612067.8467894787 0.09558361975917083 0.06304207451989849 95.89725032968823 -1.9818061547852255 0.48961832564590424 DQINSDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQINSDHR 8 0 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 123.75 0.0013343 46402000.0 54276.0 68162.0 68473.0 75606.0 69315.0 67406.0 78803.0 69349.0 79863.0 76133.0 False True 53983.78404663046 70430.73096520081 78113.40322201475 85177.71184794218 78141.85438780725 62746.38187665656 74990.99783330617 74524.17452708662 60181.83375937281 71274.12675925942 0.7574106692175963 0.9881668729957601 1.0959573518993246 1.1950719808275518 1.0963565313363257 0.8803528675783461 1.052148952825492 1.0455992646364478 0.8443713938810821 1.0 16.121090838120907 1.2599511500314697 24.97319523633927 0.9221856026804385 1.0229913058550377 0.08060545667013996 0.12078130674308983 493.15720487277054 575757.764323142 0.08273313467919494 0.030148350865448065 18.19496187967803 -1.2599511500314697 0.10080570317459925 DQITAGNAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQITAGNAAR 10 0 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ; 128.03 0.00079164 191070000.0 116529.0 149344.0 152509.0 138407.0 139801.0 131600.0 139703.0 135284.0 148029.0 165207.0 False True 115901.62081158895 154314.82475964542 173980.94156800822 155929.31200881046 157603.82868455345 122502.80175307824 132945.032172714 145379.57903823265 111549.23643697565 154663.34781917144 0.7493800079065808 0.9977465697953628 1.1249009155771181 1.0081852889355476 1.0190121376967731 0.7920609729481964 0.8595768425247723 0.9399743448474093 0.7212389878395511 1.0 17.23877182129138 2.75177928666038 24.656529432943476 0.8654363633891362 0.9904726453359927 0.2097599076035429 0.1128061286097658 997.5527458663391 1860713.9000108407 0.03444322210110101 0.03632331636624069 564.6499404318562 -2.75177928666038 0.12503628194685645 DQIYDIFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQIYDIFQK 9 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3KTN0 P60842;J3KTN0 EIF4A1 Eukaryotic initiation factor 4A-I 0 96.89 0.016429 515420000.0 562450.0 469940.0 479080.0 463390.0 430830.0 539440.0 538940.0 475750.0 740280.0 600960.0 False True 559421.8316940699 485581.6688152708 546530.2997619906 522055.1264875525 485693.6467705251 502149.7825051717 512869.4132492678 511252.8808095505 557847.9132437861 562606.2182922591 0.9943399370738291 0.8630933200297902 0.9714259849827724 0.9279227806478999 0.863292354366087 0.8925421834643109 0.9115957068623184 0.9087224139850656 0.9915423880971019 1.0 19.10176597278766 1.2252467946839103 8.553147574401425 0.9963313995028534 0.9139598451951986 0.38930435842745836 0.03954622323487284 0.16338916732756398 73.78642085088157 0.03204862841311322 0.00904672562678322 16.797582960802135 -1.2252467946839103 -0.08237155430765486 DQKEEGNDYDT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 DQKEEGNDYDTR 12 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 1 DQKEEGNDYDT(1)R;DQKEEGNDYDT(1)R 128.59 0.00040305 528810000.0 1033580.0 866270.0 730530.0 693830.0 764700.0 942990.0 866910.0 874090.0 1209290.0 944510.0 True False 1028015.3201215325 895103.2732787272 833382.2741194105 781668.806860007 862080.0122679969 877803.3208596916 824974.2513821991 939319.0343390837 911276.6831558031 884230.5631643054 1.1626100283648637 1.0122962387496681 0.9424943095577591 0.8840101659263268 0.9749493493902308 0.9927312597275384 0.9329854517015881 1.0623010258519439 1.0305871806723244 1.0 19.754063075912157 1.7097956643445744 12.625924411489299 1.0344227888957271 0.9812699034019079 0.07584608606170984 0.07020964820274662 0.29334556448047144 101.9054623322468 0.034160112580833034 0.018729763522900126 51.262013934739144 -1.7097956643445744 -0.053152885493819246 DQKLPHLER ddPTM_BT-474_Trastuzumab_2h_R1 1 DQKLPHLER 9 1 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 81.475 0.012724 92523000.0 133590.0 171630.0 177400.0 167340.0 157270.0 183390.0 193920.0 165360.0 274810.0 204940.0 False True 132870.76628324416 177342.6007974741 202376.37801155777 188525.22684224337 177297.4022876783 170712.6809536248 184539.34875366068 177700.00288106618 207086.75776533847 191860.5537420385 0.6925382195127632 0.9243307044548398 1.0548097254199427 0.9826158799464346 0.9240951244519979 0.8897747745644081 0.9618410098085021 0.9261935265754964 1.0793607843109427 1.0 17.5496986004019 4.716945445159413 3.871197045244309 0.9680785750290422 0.6713848632871312 0.6961829136868078 0.05589095639319031 0.1273860195363448 3.7960952358757933 0.013658893106486616 0.10312405170932865 52112.92442162331 -4.716945445159413 -0.29669371174191095 DQLESVLEVLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQLESVLEVLHR 12 0 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9;H0YDE2;Q6IQ23-3;A0A1B0GUN0;E9PL74 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 0 117.93 0.00068019 29665000.0 34909.0 37840.0 32349.0 33006.0 30653.0 35847.0 36560.0 31687.0 38576.0 39505.0 False True 34721.05382275453 39099.481525236966 36903.45801745145 37184.55621581859 34556.47785543465 33368.98126476137 34791.45312723722 34051.64484332571 29069.461691916986 36983.757078067894 0.9388189996344317 1.0572068555042435 0.9978288019671191 1.0054293872125224 0.9343690469978597 0.9022604489404308 0.9407225191804335 0.9207189191581353 0.7860061818639772 1.0 15.174604171153913 3.1419822267286475 3.291565507920543 0.9094042357584774 1.0045545369072575 0.3615583064272565 0.056393011915407666 0.2499836033485876 5.3707981941888745 0.01626045132014288 0.020213990627839303 1386.699077786292 -3.1419822267286475 0.09515030114878009 DQLIYNLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DQLIYNLLK 9 0 F5GZQ4;P00338;P00338-3;P00338-4;P00338-2;P00338-5;F5GXY2;F5GYU2;F5GXH2;F5H5J4;F5H6W8;F5GXC7;F5H8H6;F5GXU1;F5GWW2 F5GZQ4;P00338 LDHA L-lactate dehydrogenase A chain 0 ; 129.38 0.00090924 725880000.0 1291620.0 1160310.0 1128730.0 1082360.0 910020.0 1462480.0 1395840.0 1087690.0 1703460.0 1386700.0 False True 1284666.061432471 1198930.2169277943 1287645.3729029645 1219386.665023128 1025905.6528888739 1361382.199907613 1328317.88657338 1168858.9509779064 1283665.108194548 1298199.6187864004 0.9895751337790555 0.9235330218696209 0.9918700901381389 0.9392905739435131 0.7902526222029892 1.0486693881332962 1.023200028216874 0.9003691990532195 0.9888041019412409 1.0 20.308080806968338 DQLKEVWEETDGLDPNDFDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQLKEVWEETDGLDPNDFDPK 21 1 P80303-2;P80303;E9PKG6;Q2L696;H0YEG8 P80303-2 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 0 74.047 0.012628 97404000.0 62721.0 49149.0 48875.0 47004.0 42789.0 71141.0 65929.0 63806.0 119190.0 61791.0 False True 62383.317104958194 50784.89475380207 55756.175170884446 52954.701580571316 48237.92551972706 66223.19011790089 62739.76239676211 68567.52772030303 89817.22156417422 57847.445478063346 1.0784109235837376 0.8779107587915961 0.9638485279704885 0.9154198797015602 0.8338816886567556 1.1447902248857946 1.0845727391809203 1.1853164327939927 1.552656661359996 1.0 15.819965631405957 2.167055084990664 1.3977059944366452 1.2637567352092325 0.9368898213343397 0.4339465460155463 0.14751846406026117 0.36940927622752806 1.386017465586998 0.08826079624316639 0.04825595866919836 146.91126049528063 -2.167055084990664 -0.32686691387489275 DQMEGSPNSSESFEHIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQMEGSPNSSESFEHIAR 18 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 108.75 0.00050637 0.0 69356.0 69076.0 68418.0 59185.0 59593.0 69129.0 68416.0 71268.0 98655.0 71735.0 False True 68982.59500217593 71375.15290267627 78050.65970008336 66677.81493162521 67181.8153146158 64350.27494216234 65106.45670549946 76586.38005157119 74342.79715927187 67156.81088457664 1.027186879387964 1.0628133165130451 1.1622151003303318 0.9928675000101674 1.0003723290267927 0.9582092135488992 0.9694691550704939 1.1404112113542926 1.107003089932991 1.0 16.03524610133351 -0.6540926603453361 7.705436812492385 1.0000000000047333 1.0484264611715572 0.04107743153967891 0.06728133268794922 0.0 0.0 0.06975585890978882 0.01644161362086791 0.22177231996012697 0.6540926603453361 0.04842646116682392 DQMEYMLQNHVFPLFSSELGYMR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQMEYMLQNHVFPLFSSELGYMR 23 0 O95373 O95373 IPO7 Importin-7 0 ; 132.35 2.7199e-05 285720000.0 158863.0 176338.0 174788.0 154940.0 147208.0 176665.0 201862.0 157473.0 174999.0 203020.0 False True 158007.69925933875 182207.30373142802 199396.63111546886 174555.38811364383 165954.06622982482 164452.56437467787 192097.16387227463 169224.43489169146 131872.8413164605 190063.08978583314 0.8313434209524057 0.9586674821331318 1.0491075954839677 0.9184076103905092 0.8731525222326184 0.8652525041026444 1.0107020994383156 0.890359275345765 0.6938371961913142 1.0 17.536118862534853 3.4821561236955203 23.572403834281104 0.8916114330335533 0.9536281733362616 0.0672723234769268 0.09496193174522073 279.60117117425915 1309047.2475106313 0.02603953402727788 0.036336116092270825 3034.9820280143185 -3.4821561236955203 0.06201674030270832 DQNDHKYPFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQNDHKYPFDR 11 1 Q2M389;A0A087X256 Q2M389 KIAA1033 WASH complex subunit 7 0 113.24 0.00085218 306060000.0 173680.0 137070.0 156190.0 139780.0 155050.0 183590.0 163330.0 143400.0 186390.0 165650.0 False True 172744.92617766198 141632.29208943518 178180.19437218303 157476.13366803384 174794.69844664933 170898.8554243743 155429.1039188088 154101.23617044548 140456.68199804047 155078.07517989978 1.1139222999593437 0.9132966857186827 1.1489708920199289 1.015463555924022 1.1271399792902839 1.102018162310317 1.0022635613609583 0.9937009857239902 0.9057159229962222 1.0 17.24263520810226 1.8585784085157493 2.2371833475019813 0.9585606120213743 1.0657160891481412 0.317855317061995 0.06812400397807312 0.3570495998984925 3.3255310808774325 0.03945220577813816 0.01878727522608131 72.20685150654555 -1.8585784085157493 0.10715547712676687 DQNGNHVVQK ddPTM_BT-474_Trastuzumab_2h_R1 4 DQNGNHVVQK 10 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;A0A0C4DG68;H0YC97;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38;H0YDK8 Q8TB72-3;Q5T1Z4 PUM2;PUM1 Pumilio homolog 2;Pumilio homolog 1 0 ;;; 115.23 0.0012502 648690000.0 1432780.0 1388370.0 1290130.0 1276490.0 1316870.0 1472330.0 1544040.0 1452480.0 1900860.0 1624440.0 False True 1425066.071676824 1434581.0561626123 1471769.0899890135 1438093.50311853 1484565.588799994 1370551.2925920216 1469348.8863944036 1560871.4331439936 1432418.5232190285 1520766.8484469445 0.9370707108273348 0.9433274125009051 0.9677808873148641 0.9456370676327912 0.9761953913685583 0.901223809548237 0.9661894509963506 1.0263712907327018 0.9419054108668005 1.0 20.53636755711864 1.9944899486688725 24.993713708121973 0.9933368795068106 0.9464191603694305 0.348819255906731 0.02695180252867869 232.86453393830453 1056280.568437685 0.009828694932200939 0.007046396287566039 98.73927832191931 -1.9944899486688725 -0.046917719137380076 DQPPFGDS(ph)DDS(ph)VEADKSSPGIHLER ddPTM_BT-474_Trastuzumab_2h_R1 1 DQPPFGDSDDSVEADKSSPGIHLER 25 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 DQPPFGDS(1)DDS(0.987)VEADKS(0.006)S(0.007)PGIHLER 74.846 0.018228 209540000.0 192440.0 178240.0 142130.0 153950.0 167590.0 251470.0 223740.0 213680.0 314560.0 226950.0 True False 191403.9244220941 184172.61065164482 162140.66858389377 173440.05421515077 188931.5931162463 234086.47079670674 212916.84143019826 229625.88664505412 237040.90288804984 212465.85669832941 0.9008690967879127 0.8668339163461125 0.763137527617484 0.8163196520625448 0.8892327268587991 1.1017604166352029 1.0021226221421033 1.0807660591371604 1.1156658607251584 1.0 17.69687149295914 2.8633899138170165 4.041872931356885 1.061198333471997 0.8353262270100363 0.8291455288466569 0.04863959327789377 0.09192055365898219 2.568231303293075 0.015519240314148027 0.016600116214700245 730.1127183962136 -2.8633899138170165 -0.22587210646196065 DQQNLPYGVTPAS(ph)PSGHSQGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DQQNLPYGVTPASPSGHSQGR 21 0 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 DQQNLPYGVT(0.003)PAS(0.945)PS(0.049)GHS(0.003)QGR;DQQNLPYGVTPAS(0.997)PS(0.003)GHSQGR;DQQNLPYGVTPAS(0.983)PS(0.015)GHS(0.002)QGR 159.86 1.4138e-11 1575510000.0 201595.0 190283.0 212226.0 202812.0 169848.0 208243.0 178824.0 171784.0 257906.0 201346.0 True False 200509.63491931025 196616.45462649723 242105.57609853928 228487.97840521732 191477.13603203156 193847.65156129393 170173.59994598108 184603.39438147706 194348.52206334355 188495.92589901676 1.0637345818642765 1.0430806591110668 1.2844074742933325 1.2121640152988005 1.0158157802021246 1.0283917312098525 0.9027972309446544 0.9793495190998184 1.0310489265824356 1.0 17.524173816239486 3.116319700240358 5.382164550821057 0.9833338562260217 1.1520284176780984 0.5357361897033235 0.07219483063624633 0.16954294783074744 7.335084876227371 0.022724649221074013 0.027395709351302634 1307.132762853296 -3.116319700240358 0.16869456145207673 DQREEELGEYYMK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQREEELGEYYMK 13 1 O00267;O00267-2;M0QYL9 O00267 SUPT5H Transcription elongation factor SPT5 0 136.17 6.8829e-05 257550000.0 114650.0 130780.0 122910.0 113290.0 139320.0 148140.0 146810.0 132710.0 191040.0 144520.0 False True 114032.73713881236 135132.93324182066 140214.6596471283 127632.50238411447 157061.576185664 137899.4304840503 139708.23943133757 142613.4940877254 143960.75180484788 135296.60987020296 0.842835140128122 0.9987902385097505 1.0363501331012173 0.9433532924923909 1.1608685268340522 1.0192378849428996 1.0326070961080762 1.054080321927814 1.0640381303194284 1.0 17.045766164566327 5.596830043767519 1.043326556565883 1.0459254046798807 1.6462607693583886e-12 0.5619966986953153 0.051797458222742364 6.333463182806058 1.4801212114556228 0.014428908649772941 11.301488617557698 395211.9280844529 -5.596830043767519 -1.0459254046782345 DQRPS(ph)SPIR ddPTM_BT-474_Trastuzumab_2h_R1 3 DQRPSSPIR 9 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 DQRPS(0.5)S(0.5)PIR;DQRPS(0.5)S(0.5)PIR;DQRPS(0.907)S(0.093)PIR 106.01 0.0018202 3504220000.0 364514.0 417954.0 431946.0 452971.0 380886.0 430984.0 396081.0 441146.0 514038.0 430371.0 True False 362551.49712531274 431865.3462314715 492760.24225806276 510317.08215583704 429389.5744118054 401191.09050720884 376921.04885364417 474066.5546139983 387360.22265630524 402904.35432084976 0.8998450705166559 1.0718805632156532 1.223020394228991 1.2665960957807123 1.065735750450253 0.9957477158157576 0.9355099909232701 1.17662306085796 0.9614197972847768 1.0 18.620077871690885 3.0093506106690393 24.97376660309382 1.0307103741222432 1.1257036938796061 0.14880465032666101 0.10979552810916379 429.27497977298606 1146505.2847807978 0.03369414627286556 0.04021872751280847 1021.7640320697484 -3.0093506106690393 0.09499331975736292 DQS(ph)PFSK ddPTM_BT-474_Trastuzumab_2h_R1 8 DQSPFSK 7 0 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 DQS(1)PFSK;DQS(1)PFSK;DQS(0.981)PFS(0.019)K;DQS(1)PFSK;DQS(0.998)PFS(0.002)K;DQS(0.991)PFS(0.009)K;DQS(0.995)PFS(0.005)K;DQS(0.999)PFS(0.001)K 187.5 0.00061186 46459900000.0 20423300.0 15950600.0 14111700.0 13240700.0 13664000.0 16960600.0 18765800.0 17390500.0 25567800.0 17052300.0 True False 20313343.222041935 16481506.078658668 16098504.698904736 14916971.26240043 15404029.40712686 15788153.64295791 17858026.561682392 18688267.417169686 19266958.28096728 15964007.61479149 1.2724463500769416 1.032416575859541 1.0084250200425002 0.934412687737575 0.9649224542372568 0.9889843467832826 1.1186430746334646 1.1706501192002707 1.20689984281362 1.0 23.92831953633543 2.1194706974885107 5.404779233942294 1.1445736661005081 1.025110267199757 0.15272124918765018 0.10012279226555763 0.3142082635027662 13.642076701305289 0.03879113858857821 0.028364714741781483 131.66510732672756 -2.1194706974885107 -0.1194633989007512 DQS(ph)PPPS(ph)PPPSYHPPPPPTK ddPTM_BT-474_Trastuzumab_2h_R1 3 DQSPPPSPPPSYHPPPPPTK 20 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 2 DQS(0.991)PPPS(0.993)PPPS(0.007)Y(0.01)HPPPPPTK;DQS(1)PPPS(0.988)PPPS(0.008)Y(0.004)HPPPPPTK;DQS(1)PPPS(0.995)PPPS(0.002)Y(0.003)HPPPPPTK 110.78 9.3902e-05 1889070000.0 1165070.0 1433230.0 1568940.0 1527440.0 1476190.0 2044680.0 1943070.0 1728480.0 2003290.0 1851290.0 True False 1158797.392571445 1480934.1941441698 1789833.1145290495 1720813.7473880502 1664174.0464363694 1903336.084258997 1849076.280851775 1857467.9546435964 1509606.0222107086 1733139.0872308922 0.6686118852831965 0.8544808694553877 1.0327117585171655 0.9928884300552389 0.9602080171737912 1.098201580174408 1.066894338991639 1.071736231863162 0.8710241626496743 1.0 20.72495600709195 4.56494794354976 2.0502050818144824 1.021973584046655 0.629075158874459 0.7447190039540511 0.06288521345292489 0.23216950825354216 1.4011105339213057 0.01630352554159331 0.14843931457021303 36723.827906153936 -4.56494794354976 -0.3928984251721961 DQS(ph)TPIIEVEGPLLSDTHVTFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 DQS(0.608)T(0.392)PIIEVEGPLLSDTHVTFK 140.26 8.4344e-08 279210000.0 104030.0 143140.0 137410.0 121680.0 112990.0 153740.0 140750.0 142830.0 176620.0 137960.0 True False 103469.91403881946 147904.32837004276 156756.1336108692 137084.67552386853 127378.60675580094 143112.31566503254 133941.38478278555 153488.69987604412 133094.3675867476 129155.27468650175 0.8011280552805273 1.1451667671262402 1.2137029168290876 1.0613943244409785 0.9862439382749693 1.1080640416150922 1.0370570238645003 1.1884044244310332 1.0304988929782946 1.0 16.97874703859474 DQSCKPCAEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQSCKPCAEGR 11 1 Q6UXG2-2;Q6UXG2-4;Q6UXG2;Q6UXG2-3;E9PB18;E9PS21;E9PLY8;E9PLQ2 Q6UXG2-2 KIAA1324 UPF0577 protein KIAA1324 0 112.43 0.0013927 58516000.0 81990.0 99809.0 95070.0 83180.0 100660.0 128600.0 94681.0 86442.0 116410.0 102280.0 False True 81548.57494994534 103131.0822291853 108455.02963674646 93710.57947136238 113478.45434143634 119710.184691838 90100.91831345581 92892.74098358185 87722.31531408265 95752.40283368659 0.8516608725901945 1.0770599919911652 1.1326611805776112 0.9786760091454761 1.1851238296185458 1.2502055420976115 0.9409781441198202 0.9701348293570062 0.9161369607240929 1.0 16.547021070375536 DQSSWQNSDASQEVGGHQER ddPTM_BT-474_Trastuzumab_2h_R1 2 DQSSWQNSDASQEVGGHQER 20 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 375.17 2.450499999999999e-112 2876200000.0 843330.0 817710.0 824290.0 841280.0 921610.0 982170.0 965660.0 833020.0 938970.0 977030.0 False True 838789.6049827714 844926.983033866 940342.8671428818 947785.9617416192 1038971.5706895611 914274.8996794901 918947.3366205669 895184.1823898511 707573.4250533831 914675.1089225338 0.9170355646507603 0.9237454641453735 1.0280621588692669 1.036199577856764 1.1358913788672413 0.999562457489944 1.0046707597663456 0.9786908746695396 0.7735789660734163 1.0 19.80289986594224 -0.881847486431136 4.630556813083009 1.000000097883233 0.9852640547404569 0.0 0.08999400416021858 9.199494841181372e-08 2.2279342965455737e-08 0.08819479282728827 0.0207875740259722 0.1312660792358147 0.881847486431136 -0.014736043142776212 DQST(ph)PIIEVEGPLLSDTHVTFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 DQS(0.074)T(0.926)PIIEVEGPLLSDTHVTFK;DQS(0.186)T(0.814)PIIEVEGPLLSDTHVTFK 229.56 9.993400000000002e-26 498640000.0 320150.0 447900.0 423950.0 435530.0 421660.0 498620.0 474530.0 485750.0 523970.0 530450.0 True False 318426.347972009 462808.0807387326 483638.47496054065 490668.0533441029 475355.9016253741 464151.57302522694 451575.1710193616 521999.13158852106 394844.61433828605 496596.2268589065 0.6412178159027387 0.931960525890637 0.9739068659858194 0.9880623871182012 0.9572281783776677 0.9346659276110494 0.9093407210837783 1.0511540429742976 0.7951019218083382 1.0 18.921713774387683 4.738079199568453 4.268711224604102 0.9565917905977236 0.6172125521124487 0.6759913335552693 0.06396709567677716 0.11203476624128252 4.758236803480527 0.014385020090617387 0.11589389167367782 54711.57278703992 -4.738079199568453 -0.33937923848527485 DQTDFEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQTDFEHR 8 0 A0A2R8Y891;P08237;P08237-3;P08237-2;F8VZI0 A0A2R8Y891 PFKM ATP-dependent 6-phosphofructokinase, muscle type 0 ; 123.75 0.0013343 196540000.0 177543.0 183986.0 169663.0 157797.0 178771.0 183753.0 177355.0 164841.0 242720.0 192888.0 False True 176587.1282148815 190109.86278811414 193550.0756627677 177774.08402070907 201536.42719126728 171050.5876180348 168775.66108810625 177142.27246563745 182904.90828136902 180577.72270027487 0.9779009590678192 1.052786910507565 1.0718380582527585 0.9844740611541585 1.1160647292345132 0.9472408061206236 0.9346427597176102 0.9809752267153151 1.0128874456178454 1.0 17.462260397531214 2.7039659943526884 24.997763585010535 0.9712022694124602 1.0399052163272855 0.36528588215354707 0.04298405232335488 630.6599104081992 455708.49173843075 0.013412267849479206 0.012645678594672173 505.78505702914094 -2.7039659943526884 0.06870294691482526 DQTKPTPLILDEQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQTKPTPLILDEQGR 15 1 O43395;O43395-3 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 142.39 4.1914e-06 599370000.0 293080.0 250270.0 263310.0 268530.0 232390.0 313730.0 312290.0 264940.0 408890.0 316650.0 False True 291502.08984424913 258600.08565859 300381.7592684514 302525.8704669985 261983.48901655496 292042.5835409822 297183.33963634877 284711.16813806054 308124.53834529064 296441.1259022957 0.9833388972497884 0.872348885032309 1.0132931399250404 1.0205259798085784 0.8837622924927844 0.9851621722595831 1.0025037475208407 0.9604307339997715 1.039412252289332 1.0 18.17738608408956 1.782341625827257 0.9862108654627038 1.0106345128607586 0.9573325204650638 0.144251127584195 0.04921529925110286 1.1035349092631501 1.9944908135425623 0.04219784389754426 0.01762170443641355 60.58172368627198 -1.782341625827257 -0.053301992395694775 DQVANSAFVER ddPTM_BT-474_Trastuzumab_2h_R1 8 DQVANSAFVER 11 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;;; 281.88 4.5931999999999995e-27 16813300000.0 2785904.0 3153902.0 2894986.0 2916973.0 2718788.0 2997834.0 3154177.0 2699169.0 3698760.0 3287109.0 False True 2770905.002407033 3258877.721495981 3302574.865130598 3286261.4827160207 3065009.536281002 2790600.7917221747 3001597.408383746 2900594.6968824626 2787250.1588447443 3077322.889384396 0.9004271251371154 1.0589976543371125 1.0731973809193818 1.0678962204623974 0.9959986801690943 0.906827425015651 0.9753924161608539 0.9425707997325926 0.9057386108099695 1.0 21.553244396315105 2.9752438484601123 6.7600924920678755 0.9454586816998503 1.0312472725148005 0.3324612271678563 0.052859996188691444 0.19397508398152702 34.86311337966927 0.015751270083780893 0.017328810025300567 944.5910981546629 -2.9752438484601123 0.08578859081495027 DQVLHEHIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DQVLHEHIQR 10 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 ; 149.49 1.3444e-05 888100000.0 288930.0 325810.0 308800.0 334690.0 317320.0 355370.0 311930.0 91724.0 409070.0 268310.0 False True 287374.4329831409 336654.3888936959 352276.35586228396 377061.7196834613 357728.82109700615 330804.10835099866 296840.75421168236 98568.91064503454 308260.17975716677 251186.22608825183 1.1440692328494746 1.340258158802926 1.4024509279362918 1.5011241880396116 1.4241577918819546 1.3169675483510543 1.1817556990859452 0.39241367721494136 1.2272176884765271 1.0 17.938397829992006 1.9661999439773326 9.820231423101912 0.8005676636181391 1.3566140260051065 0.4919047668724815 0.2151660244121063 0.3674835387449287 104.27201970050278 0.08640927214720058 0.05576256322809187 92.51239919143626 -1.9661999439773326 0.5560463623869674 DQVNLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 DQVNLSPK 8 0 Q5FBB7-6;Q5FBB7 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 DQVNLS(1)PK;DQVNLS(1)PK 122.77 0.0014438 326320000.0 829620.0 701030.0 598330.0 590510.0 567430.0 1004890.0 948780.0 826480.0 1493090.0 929010.0 True False 825153.4180994474 724363.3597684166 682569.6632224099 665268.5054536451 639688.8470788929 935424.3195566178 902883.8867084284 888156.1343804025 1125137.9758809714 869719.7864345236 0.948757784943839 0.8328698174592466 0.784815608278445 0.7649228128762706 0.735511433747347 1.0755467843171125 1.0381319371953848 1.0211980320942908 1.293678715179693 1.0 19.730191130756022 2.7281548434445373 24.626344588122155 1.0775477648964782 0.8101800349533135 0.6840962955641182 0.09243632618037982 346.09339333588537 819064.5414833141 0.029938177103319443 0.028518811926035878 534.7549870655953 -2.7281548434445373 -0.2673677299431647 DQVTAQEIFQDNHEDGPTAK ddPTM_BT-474_Trastuzumab_2h_R1 5 DQVTAQEIFQDNHEDGPTAK 20 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;; 300.0 8.487100000000001e-55 7136510000.0 6308610.0 5291510.0 5019540.0 4333380.0 4556150.0 6156000.0 5966310.0 5703800.0 7283020.0 6193620.0 False True 6274645.14471246 5467634.711564656 5726247.601376184 4881985.463688538 5136348.696083203 5730450.20966528 5677696.791782455 6129446.519309531 5488217.308468092 5798337.868975143 1.08214548487867 0.9429658697227765 0.9875670805620541 0.8419629166162113 0.8858312178677945 0.988291875905834 0.9791938517694534 1.0571040628912007 0.9465156105913738 1.0 22.46720797096995 2.500809433706146 20.42835479138463 1.0030178478661314 0.9434017803643928 0.10827602031080041 0.06441995322209622 143.64010162237014 123873.3410048292 0.0216675025787373 0.020243510521413002 316.8176977439408 -2.500809433706146 -0.059616067501738534 DQWEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DQWEDR 6 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;; 187.93 0.003913300000000001 5389130000.0 4778180.0 4822210.0 4662740.0 4483450.0 4704440.0 5548110.0 5290770.0 4588260.0 6239400.0 5134010.0 False True 4752454.809785703 4982714.3447625 5319213.262737384 5051054.310301518 5303522.548599514 5164582.21454614 5034835.242395861 4930659.259912188 4701783.473676551 4806353.086352897 0.9887860347338543 1.036693362980419 1.1067046401232352 1.0509120365383524 1.1034400622081375 1.0745324202689968 1.0475375304181695 1.025862888415802 0.97824346010424 1.0 22.19651120556123 1.5602239364399806 2.2460544931184723 0.989578917958064 1.0622097318428902 0.4202005540762588 0.032371647281193905 0.267021325635919 2.870414010122476 0.025746956752933464 0.009161939683783305 36.32653179662366 -1.5602239364399806 0.07263081388482628 DQWLQDAFHIS(ph)L ddPTM_BT-474_Trastuzumab_2h_R1 4 DQWLQDAFHISL 12 0 Q8N5H3-1;Q8N5H3;Q8N5H3-2 Q8N5H3-1 FAM89B Protein FAM89B 1 DQWLQDAFHIS(1)L;DQWLQDAFHIS(1)L;DQWLQDAFHIS(1)L;DQWLQDAFHIS(1)L 136.83 0.0001081 124199000.0 233038.0 254250.0 226876.0 256649.0 259491.0 260822.0 255382.0 226145.0 297677.0 260242.0 True False 231783.34930095557 262712.55755262973 258818.168758457 289140.7370851853 292535.640726343 242791.98904894688 243028.19700602008 243021.08824104205 224318.49201744006 243633.13275561415 0.9513621841141575 1.0783121104310305 1.0623274668395566 1.1867874201462547 1.2007219109224458 0.9965474987036718 0.9975170218321624 0.9974878436785277 0.9207224382015873 1.0 17.89435081955203 2.531969043457728 16.161830396622307 0.9833569449696287 1.0981666614277192 0.4116059142691414 0.06797182297064255 7.435132346685084 2190.24185355197 0.023264154834470054 0.021929770604684314 340.3839262452297 -2.531969043457728 0.11480971645809057 DQWYNVLEFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DQWYNVLEFSR 11 0 E9PM04;Q9BTE7 E9PM04 DCUN1D5 DCN1-like protein;DCN1-like protein 5 0 94.767 0.019212 41767000.0 29426.0 34838.0 32358.0 31894.0 25629.0 30904.0 31416.0 25921.0 37465.0 32379.0 False True 29267.573685535936 35997.56176998429 36913.72513922206 35931.77712983451 28892.70123501564 28767.679220190978 29896.288059225513 27855.35664417097 28232.252755279696 30312.544498943433 0.9655267866594334 1.1875466861991415 1.217770588031919 1.18537647445225 0.9531598786114018 0.9490354470636306 0.9862678489516963 0.918938251625227 0.9313719195121924 1.0 14.887627339620549 3.231657235240695 24.99803433911389 0.9519137365198792 1.1481413549470443 0.6329050595126766 0.06793175608163723 94.86550095744767 343519.81259261974 0.019573935129037916 0.023884003825171297 1704.7364031912289 -3.231657235240695 0.19622761842716507 DQYLGHLQQYVAAYQQLTSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DQYLGHLQQYVAAYQQLTSEK 21 0 Q08379;Q08379-2;A0A1W2PQY5 Q08379 GOLGA2 Golgin subfamily A member 2 0 ; 219.35 5.0894e-25 690830000.0 700410.0 649350.0 650500.0 614950.0 620110.0 710260.0 748160.0 706340.0 911820.0 722610.0 False True 696639.0703828662 670963.2222096351 742084.7457526401 692802.6069477559 699077.3328200689 661161.3979721987 711968.6425512522 759050.6775218447 687114.1787620209 676492.4111424546 1.0297810572721549 0.991826680031071 1.096959453690565 1.0241099464482637 1.0333853289491794 0.9773374942309182 1.0524414329332765 1.1220387176848983 1.0157012369165064 1.0 19.367714224649628 2.010743499015319 24.992125961383476 1.0664149069282756 1.026510840641715 0.0 0.04327188207797138 394.58938460030504 917913.2235621765 0.015975973811155352 0.011786660295810365 102.50463393385694 -2.010743499015319 -0.039904066286560624 DQYSVIFESGDR ddPTM_BT-474_Trastuzumab_2h_R1 5 DQYSVIFESGDR 12 0 P55884;P55884-2;C9JZG1;C9JQN7 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;;; 296.75 6.162399999999998e-36 3200230000.0 2290850.0 2482430.0 2305020.0 2370410.0 2327090.0 2620140.0 2523660.0 2332790.0 2850080.0 2564990.0 False True 2278516.318137364 2565056.181889379 2629546.780406999 2670503.662956386 2623431.11775694 2439015.888946132 2401580.924482589 2506874.6354676005 2147715.9731153734 2401290.142201578 0.948871724450736 1.0681991887651092 1.0950558344424586 1.1121120334538102 1.0925090107402418 1.0157106157567306 1.0001210941884535 1.0439699024330393 0.8944008620075707 1.0 21.195378300849992 1.849991950102169 1.1355165309799822 0.9652265623457843 1.0640790853929092 0.31400100366729156 0.05457525816131925 0.591827157669876 1.4092386766963114 0.045102397060641855 0.018965843967544437 70.79326623237485 -1.849991950102169 0.09885252304712489 DRAEAEAR ddPTM_BT-474_Trastuzumab_2h_R1 6 DRAEAEAR 8 1 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749;P35749-2;P35749-4;P35749-3 P35579;P35580;P35749 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 0 ;;;;; 200.6 0.00010806 1064377000.0 1363980.0 1521338.0 1447019.0 1463659.0 1331927.0 1292849.0 1508737.0 1331778.0 1925556.0 1673666.0 False True 1356636.483232425 1571974.815661759 1650746.6974853808 1648958.0793276627 1501540.0085001644 1203477.3916691912 1435753.6273749585 1431162.036991658 1451028.5249284757 1566851.202982446 0.8658361946878653 1.0032700059007267 1.0535440087375514 1.0524024720336744 0.9583169133367839 0.7680865862555516 0.9163305517729138 0.9134000945766206 0.9260793380804088 1.0 20.579436749190776 2.9933204169459926 24.95194648398886 0.897804463227823 0.9995432258323862 0.24973817631657047 0.07228983821723795 374.2070985762294 1397878.4902076216 0.021231253023817023 0.024531041689870994 984.7373645209692 -2.9933204169459926 0.10173876260456316 DRAPKPPT(ph)DGSTSPTSTPSEDQEALGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRAPKPPTDGSTSPTSTPSEDQEALGK 27 2 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F6SRV7;Q8NHM5-5;F8WBN2 Q8NHM5-4;F8WBN2 KDM2B Lysine-specific demethylase 2B 1 DRAPKPPT(0.338)DGS(0.219)T(0.219)S(0.219)PT(0.002)S(0.002)T(0.001)PSEDQEALGK 189.2 3.6025e-16 380610000.0 259590.0 170620.0 175980.0 166560.0 168460.0 271140.0 300410.0 229670.0 359100.0 239860.0 True False 258192.3962831605 176298.983558032 200756.45435441937 187646.47892221832 189912.38245935205 252396.72999490652 285878.0206223559 246809.14164062912 270604.6166934725 224551.9294455223 1.1498115243129077 0.7851145345014869 0.8940313042517148 0.8356484817813268 0.8457392591918297 1.1240016089736584 1.2731042718192795 1.0991183297781753 1.2050870253560784 1.0 17.776689592855913 2.687515205991267 6.032552099712373 1.1552171371246485 0.8915025034854972 0.5241915179261463 0.1129283476026641 0.15238471061345565 13.182674121620586 0.0346718221740831 0.03291066691770787 486.9845757015663 -2.687515205991267 -0.26371463363915126 DRCESCSGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRCESCSGAK 10 1 Q8WW22-3;Q8WW22;Q8WW22-2;C9JDE6;F5H170 Q8WW22-3 DNAJA4 DnaJ homolog subfamily A member 4 0 ; 131.43 0.00022824 98993000.0 78583.0 77559.0 69821.0 72264.0 75001.0 64277.0 83403.0 73118.0 96977.0 84864.0 False True 78159.91785939211 80140.50442959453 79651.1899049887 81412.61499060511 84551.93278424477 59833.682281782814 79368.47825959968 78574.4364456808 73078.31777522381 79447.90686427425 0.9837882575423605 1.0087176313720068 1.0025586959900874 1.0247295140158608 1.0642436801851816 0.7531184224148332 0.999000242954037 0.9890057466197862 0.9198268483028509 1.0 16.27772159035911 DRCPLPCIPTLIGT(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRCPLPCIPTLIGTPVK 17 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 DRCPLPCIPTLIGT(1)PVK 99.999 0.0023322 254650000.0 212720.0 205600.0 174790.0 127590.0 141540.0 204640.0 223250.0 185990.0 298950.0 221460.0 True False 211574.73915541376 212443.27171217537 199398.91269808452 143742.88091790257 159564.2800266931 190493.71847074453 212450.54460218025 199869.51823808352 225277.7782247664 207326.23319855478 1.020491888032279 1.0246810952703704 0.9617640258149178 0.6933173805373731 0.7696289927472882 0.918811457343703 1.024716174719279 0.9640339051868558 1.0865859797347477 1.0 17.661543148100648 2.3272579505550652 4.959536632940557 1.0104640728579632 0.8895973079967907 0.25493996738196056 0.1009881317663889 0.34645978016935997 14.517094245950032 0.04059445032737016 0.03337130111831136 212.45059442300325 -2.3272579505550652 -0.12086676486117254 DRDAS(ph)PSKEER ddPTM_BT-474_Trastuzumab_2h_R1 7 DRDASPSKEER 11 2 Q9BUQ8;F8VVA2;F8W1J5;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 DRDAS(0.998)PS(0.002)KEER;DRDAS(0.986)PS(0.014)KEER;DRDAS(0.795)PS(0.205)KEER;DRDAS(0.914)PS(0.086)KEER;DRDAS(0.955)PS(0.045)KEER;DRDAS(0.951)PS(0.049)KEER;DRDAS(0.711)PS(0.289)KEER 210.08 1.1006e-08 5085537000.0 5586032.0 4409777.0 4011142.0 3712413.0 3881558.0 5381624.0 5414128.0 5137495.0 7758905.0 5362731.0 True False 5555957.424378494 4556553.76167851 4575875.928128728 4182404.105157724 4375851.403503251 5009604.999860252 5152225.944662547 5520880.964571013 5846826.826750392 5020476.9163150005 1.1066592909377488 0.9075938078454493 0.9114424793506257 0.8330690838486283 0.8716007416114363 0.99783448532162 1.026242333257106 1.0996726121038132 1.1645958987979825 1.0 22.25939298770767 2.2342612761999066 1.987012491674993 1.0942066895431188 0.9207513183872403 0.43837757320284776 0.0783017673387446 0.2875303617738057 2.288728611324911 0.038574001294129495 0.025096990642785356 171.49887527680633 -2.2342612761999066 -0.1734553711558785 DRDGYSYGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRDGYSYGSR 10 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;; 179.35 1.9296e-06 525974000.0 162351.0 234331.0 189764.0 220090.0 217665.0 209132.0 199026.0 177658.0 266166.0 213005.0 False True 161476.92025489165 242130.56567891905 216481.1217417435 247953.3714336639 245383.34754846792 194675.1970837751 189398.35202684678 190915.7420890447 200572.95574167272 199410.83853724453 0.8097700277446661 1.2142297151701493 1.0856035876972188 1.2434297616543695 1.2305416764126238 0.9762518352151408 0.9497896574537111 0.9573990234908261 1.005827753460909 1.0 17.605384300817736 2.6664422129024423 10.433873695706534 0.9712523091229206 1.127398525505326 0.25717115375781197 0.11703525908235766 0.8078875879234139 114.2886175427011 0.037099086020469886 0.03497113768877234 463.919056940223 -2.6664422129024423 0.15614621638240544 DRDHFQLGTLSHTLNIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRDHFQLGTLSHTLNIK 17 1 O00203;O00203-3 O00203 AP3B1 AP-3 complex subunit beta-1 0 104.76 0.00053837 231070000.0 482980.0 580650.0 434620.0 471180.0 574270.0 614360.0 467130.0 477230.0 577520.0 557140.0 False True 480379.68934412225 599976.5842396631 495810.71821523836 530831.3396888261 647399.8805350355 571890.7392478813 444533.13729010685 512843.32592483744 435197.93437152385 521582.84820844885 0.9210036161928011 1.1502996816334812 0.9505886167811431 1.0177315866734198 1.2412215676929321 1.096452349252342 0.8522771383625918 0.9832442299173942 0.8343793049682463 1.0 18.992536903032903 2.248290901012844 24.999869566193315 0.9209965078732741 1.0678060924396304 0.34065631825421294 0.09891326396299342 227.9070048689512 585558.020683423 0.03423388601243968 0.028308289060596986 177.12950175558876 -2.248290901012844 0.1468095845663563 DRDNDSDDVESNLLLPAGIALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRDNDSDDVESNLLLPAGIALR 22 1 Q9NZM1-6;Q9NZM1-3;Q9NZM1;Q9NZM1-2;Q9NZM1-5;Q9NZM1-8;Q9NZM1-7 Q9NZM1-6 MYOF Myoferlin 0 ; 146.39 7.8263e-08 508400000.0 166207.0 203183.0 179100.0 200913.0 242589.0 229549.0 196453.0 194091.0 198104.0 196433.0 False True 165312.15997933375 209945.82332828303 204315.723234893 226348.56519992583 273481.27121234615 213680.81793022322 186949.81786666118 208575.05599412796 149283.92365759867 183896.47776524772 0.8989414152366871 1.1416522267288256 1.1110366316842206 1.230847746245962 1.4871479570231765 1.161962537439116 1.0166035812024155 1.134198210475698 0.8117823977475329 1.0 17.488534321999204 1.5401475547639134 1.6841123868103312 0.9214758670421055 1.1737056877472074 0.2600863002616163 0.15250132594723012 0.4778735201923097 2.669260858433281 0.13425363887406033 0.045514841706023934 34.68546768783184 -1.5401475547639134 0.2522298207051019 DRDNQDREENDKDPER ddPTM_BT-474_Trastuzumab_2h_R1 2 DRDNQDREENDKDPER 16 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 121.32 4.3531e-05 991740000.0 968240.0 813590.0 734890.0 721080.0 739090.0 859480.0 860950.0 869460.0 1061870.0 960490.0 False True 963027.1034215774 840669.8513244599 838356.1242216112 812368.6540660013 833208.7305703576 800066.1705982956 819302.5593516113 934343.5202284218 800186.3668290089 899190.7058831401 1.0709931687691772 0.9349183057878652 0.9323451841044329 0.9034442290727788 0.9266207102886164 0.8897625001723196 0.9111555023769217 1.039093836396759 0.8898961717393485 1.0 19.77826759824565 -0.29141635475157246 6.8907806502895825 1.0000000000000913 0.945729100022234 0.07491221711859697 0.05856800671459196 0.0 0.0 0.056499328529264536 0.013317019445176511 0.5111915251989054 0.29141635475157246 -0.05427089997785728 DRDPEAQFEMPYVVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRDPEAQFEMPYVVR 15 1 O14744-2;O14744;O14744-4;O14744-3;O14744-5;H0YJD3;H7BZ44 O14744-2 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed 0 ;;; 202.63 5.3019e-09 658830000.0 206900.0 250747.0 218251.0 208830.0 223794.0 247783.0 239762.0 225747.0 253795.0 254194.0 False True 205786.07338875122 259092.96231523732 248978.84372830088 235267.85658817764 252292.8393690385 230654.3444284426 228163.79608021464 242593.38746003906 191250.62292876554 237971.12129356785 0.8647522954471764 1.08875800099968 1.0462565473276633 0.9886403665676081 1.0601825885326774 0.9692535093109089 0.9587877505470312 1.0194236432611883 0.8036715627054318 1.0 17.860426982026976 1.2775912235069133 24.996688029752804 0.9018350571292179 1.0033929251349158 0.21751702223219216 0.07380581482631232 180.22678445321063 115423.99377394488 0.04539460643254631 0.016575268092126484 18.949215006040042 -1.2775912235069133 0.101557868005698 DRDVSEEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRDVSEEHK 9 1 Q14CX7;Q14CX7-2 Q14CX7 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit 0 69.01 0.033918000000000004 52352000.0 80405.0 75330.0 68895.0 71062.0 72304.0 74773.0 87754.0 78469.0 128800.0 97022.0 False True 79972.10841383523 77837.31351205331 78594.81715392502 80058.44191384889 81511.48582061619 69604.1185067091 83509.00376716559 84324.75523750829 97058.96583157674 90829.97289528664 0.8804594547884661 0.8569562560784652 0.8652960542499895 0.8814099505032803 0.8974073559901501 0.7663122236858115 0.9193991928571746 0.9283802752503527 1.0685786061333653 1.0 16.47088082917968 1.5234802324063517 2.2293310352281477 1.0321105973050626 0.8627104972269676 0.7138429818647719 0.041729176858284776 0.14090709741812685 1.4358718348505393 0.03161968584431417 0.010832534015026764 33.37953116037283 -1.5234802324063517 -0.16940010007809503 DRDVSEEHKK ddPTM_BT-474_Trastuzumab_2h_R1 3 DRDVSEEHKK 10 2 Q14CX7;Q14CX7-2 Q14CX7 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit 0 ;; 158.4 4.8049e-06 347555000.0 292385.0 229532.0 217853.0 182191.0 240276.0 322987.0 340490.0 334243.0 525910.0 337983.0 False True 290810.8316470275 237171.8338649761 248524.80878777895 205256.36191953588 270873.7243725712 300659.66891961655 324019.19790188764 359185.9099115632 396306.5273329544 316412.6355781957 0.9190872896577446 0.7495649895004378 0.7854452725430446 0.6486983730736963 0.8560774568234006 0.9502138508792703 1.024040008104582 1.1351819413128237 1.2524990558887286 1.0 18.271447687781063 2.391409664427895 1.4496578586297717 1.1389444806302897 0.7757287836959464 0.7442851961122088 0.08735015048387944 0.19030363986748372 0.8055990180864939 0.04508190253031073 0.031093822250956877 246.26895323781514 -2.391409664427895 -0.3632156969343433 DRDVTFSPATIENELIK ddPTM_BT-474_Trastuzumab_2h_R1 4 DRDVTFSPATIENELIK 17 1 P55145;H7C2D6 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor 0 ;;; 276.03 8.833999999999998e-36 602476000.0 493455.0 469408.0 428937.0 407936.0 423381.0 561554.0 515450.0 520169.0 863330.0 528791.0 False True 490798.2931080045 485031.9615168724 489327.60121276067 459580.6557733801 477296.06077420735 522735.0937359285 490515.71428978135 558986.6521446615 650573.8895293105 495043.10565924813 0.991425367805919 0.9797772274213497 0.9884545317748116 0.9283649252348586 0.9641505059212833 1.0559385390082405 0.9908545512144086 1.1291676335947753 1.3141762446382164 1.0 18.91719462713056 1.6648563885978356 3.775587097948017 1.1751107639529796 0.9844492115879838 0.4809663444483765 0.07689450584948641 0.13291707654176124 4.453506447657638 0.041612987690059035 0.019031409813449755 46.22281476885066 -1.6648563885978356 -0.19066155236499582 DRDWSHSGNPGASR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRDWSHSGNPGASR 14 1 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 0 115.82 0.00023887 74667000.0 56446.0 66186.0 62718.0 67203.0 64842.0 75095.0 73258.0 62728.0 78022.0 77915.0 False True 56142.10100774019 68388.96099971807 71548.14924537137 75710.89290952122 73099.24435135539 69903.85940461571 69714.23066726325 67409.0818863299 58794.52354123675 72942.39799361244 0.7696772049180032 0.9375748930780543 0.9808856195218155 1.0379545366215026 1.0021502769590422 0.9583433137300639 0.9557436084479719 0.9241412914918552 0.8060404532681443 1.0 16.154470008845426 4.733094223451472 3.95706339741621 0.9580538542586682 0.7532743045192187 0.47493773955455765 0.05906833052530461 0.21191565196108003 6.878382735862371 0.014916724863077576 0.12412020315538291 54087.16563873138 -4.733094223451472 -0.20477954973944945 DRDYDKER ddPTM_BT-474_Trastuzumab_2h_R1 2 DRDYDKER 8 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 0 ; 110.14 0.0019596 69707000.0 59878.0 63649.0 60600.0 63918.0 53409.0 66719.0 68115.0 64627.0 93876.0 72897.0 False True 59555.623501071204 65767.51848836697 69131.95325535735 72010.01224633976 60210.319570055406 62106.8725696324 64820.01722543117 69449.7949092566 70741.5176739527 68244.65104973846 0.8726782624716702 0.9637021726498962 1.0130017839049716 1.0551744516043757 0.8822716307271111 0.9100621310872747 0.9498182821418293 1.0176591694877273 1.0365869937908314 1.0 16.058428352960252 1.7065826172243477 5.101975272496098 1.0210239347675405 0.952405097288703 0.2579010097254748 0.05304491327740769 0.24020634872499322 14.877342075197918 0.02982879934888666 0.014829743921366264 50.88416090002068 -1.7065826172243477 -0.06861883747883746 DRDYFDYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRDYFDYSR 9 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 0 ;; 196.48 2.6964e-05 1221800000.0 427520.0 540260.0 489560.0 498760.0 476070.0 480050.0 504720.0 477730.0 573240.0 521730.0 False True 425218.27982193755 558242.2275059333 558485.7926681985 561902.9648609854 536694.6926120375 446865.2734161489 480304.7653823629 513380.63846378657 431972.6830224616 488432.74472447427 0.8705769308357979 1.1429254765071877 1.1434241432425691 1.1504203412446392 1.098809812423178 0.9148962231601125 0.9833590613448809 1.0510774390308035 0.8844056580730232 1.0 18.89780039685071 2.75793796670618 24.239297147490095 0.9779970748617819 1.091957796699003 0.29254796222563206 0.08735873774397736 724.4087906443076 906167.5532959338 0.026677560105247158 0.02825067928050923 572.7142203978088 -2.75793796670618 0.11396072183722117 DRDYSDHPSGGSYR ddPTM_BT-474_Trastuzumab_2h_R1 8 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;;;;; 155.38 3.5216000000000007e-06 11014851000.0 2905001.0 5586055.0 6241979.0 6440357.0 6464243.0 6340382.0 6457345.0 5746622.0 5628556.0 6003573.0 False True 2889360.797391951 5771983.463833447 7120795.386945927 7255705.535855315 7287426.029479944 5902086.315993814 6144978.5528966 6175464.114395242 4241473.79258631 5620419.831222565 0.5140827347702692 1.0269666034143776 1.2669507974099146 1.2909543688441936 1.2965981631829038 1.0501148478635947 1.0933308787290241 1.0987549506692178 0.7546542642640445 1.0 22.422246469485774 -3.2198210146551816 9.751143238683529 1.00449724571284 1.0656760870627895 0.0 0.23526358461922758 0.0 0.0 0.0 0.05223430720343072 0.0006028079695255737 3.2198210146551816 0.06117884134994944 DREDRS(ph)KDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DREDRSKDR 9 3 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 1 DREDRS(1)KDR 85.845 0.080345 182220000.0 135000.0 112360.0 91378.0 103470.0 104520.0 85467.0 131680.0 125440.0 214310.0 146390.0 True False 134273.17499990994 116099.83467694557 104243.22812818567 116569.29139098185 117830.0024614241 79558.86745767733 125310.13533355024 134800.9697714133 161496.172106873 137047.2648692157 0.9797581522553327 0.8471517821806931 0.7606370563299096 0.8505772917265004 0.8597763886340187 0.5805213809527714 0.9143570683671345 0.9836093401794919 1.178397629905193 1.0 17.06431401019631 1.686658854996052 2.6564900461545937 1.0830606451921905 0.8145341315329656 0.5065955770131426 0.10634319234139787 0.18656914512602213 2.9384483076585903 0.06740790530363008 0.028860074777604272 48.60252753661236 -1.686658854996052 -0.26852651365922486 DREDS(ph)PERCS(ph)DS(ph)DEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DREDSPERCSDSDEEK 16 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 3 DREDS(1)PERCS(1)DS(1)DEEK 66.137 0.036589 250140000.0 464210.0 327020.0 231900.0 228520.0 262630.0 391300.0 333700.0 293520.0 526530.0 272580.0 True False 461710.7449385795 337904.6630122353 264549.50428906584 257450.6085693167 296074.3737700327 364250.3520211214 317557.6561422063 315423.95286435995 396773.7366405289 255183.71103252098 1.8093268691422801 1.3241623520757257 1.0367021594703247 1.0088833943499897 1.1602400975048934 1.4274044003329853 1.244427612002775 1.2360661720456048 1.5548552649975511 1.0 17.961176715911783 7.99999999597568 0.01919275569488498 5.452472016984238e-12 2.8815344662954145 0.10400862135218192 0.2334104311874386 11185.531194737197 16.547150275366338 931.9911325247244 1645.9250353763712 99999999.07336599 -7.99999999597568 2.881534466289962 DREDYVPYTGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DREDYVPYTGEK 12 1 Q9NYL9 Q9NYL9 TMOD3 Tropomodulin-3 0 ;; 195.1 6.1386e-07 2661480000.0 2069360.0 1936030.0 1727100.0 1622360.0 1671590.0 2187290.0 2114070.0 1995540.0 2900850.0 2165360.0 False True 2058218.7956875088 2000469.5881951519 1970260.6677776864 1827750.6096556834 1884457.0782098323 2036087.7906268279 2011804.3575683373 2144457.3279467975 2185974.3868985195 2027164.870942034 1.015318894477016 0.9868312226945425 0.9719291686729437 0.9016289872891878 0.9296022761750579 1.0044016743841102 0.9924226620173432 1.0578603441121477 1.0783407004693633 1.0 20.951031998443533 2.0702258891428866 1.8634879584423738 1.0503254280308065 0.9620765684445103 0.471577323132487 0.03635388988750372 0.2958468353744866 1.9535018257973116 0.02192764447883612 0.011876560590425075 117.55088121507667 -2.0702258891428866 -0.08824885958629625 DREEALHQFR ddPTM_BT-474_Trastuzumab_2h_R1 3 DREEALHQFR 10 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;; 172.21 2.2739e-06 5633960000.0 2695340.0 2669120.0 2653000.0 2596630.0 2437320.0 2749180.0 2925380.0 2766590.0 3517520.0 2958170.0 False True 2680828.588920423 2757960.045682886 3026519.3397106165 2925363.0917615267 2747698.2548725405 2559135.657473614 2783868.193363162 2973046.9942593616 2650674.3283531643 2769377.057983246 0.9680258530316174 0.9958774077847405 1.092852030021015 1.056325314506604 0.9921719568492082 0.9240835046626923 1.005232633576617 1.0735435919384826 0.9571373896927834 1.0 21.401130063133294 3.214314920051613 24.989673029324138 0.9987408414237132 1.0305693871835473 0.11216599523697113 0.04758636409776293 638.997550636731 658603.5662629978 0.015317789527984085 0.01831718235499663 1638.0038569804992 -3.214314920051613 0.03182854575983407 DREEDEEDAYER ddPTM_BT-474_Trastuzumab_2h_R1 2 DREEDEEDAYER 12 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 271.04 9.5822e-28 1582230000.0 1057510.0 1115820.0 984770.0 933040.0 975900.0 1158840.0 1156530.0 1021590.0 1408240.0 1160220.0 False True 1051816.4836604055 1152959.3941725672 1123417.056225716 1051162.7683332544 1100175.080387521 1078732.1184159378 1100584.2255263594 1097826.2333289094 1061198.121449222 1086173.7662856837 0.9683685210491065 1.061487056638521 1.0342885191081264 0.9677666695337762 1.0128904918682733 0.9931487501348945 1.0132671766599135 1.0107279952848363 0.9770058478563065 1.0 20.050823493557335 3.78282793698226 24.99981990135018 0.9991223060266622 1.0253919403680516 0.15365321411385557 0.02582010528273358 764.064208476803 431499.94169140275 0.00629806054099019 0.011353959099214788 6064.959944923102 -3.78282793698226 0.026269634341389403 DREEDEEDAYERR ddPTM_BT-474_Trastuzumab_2h_R1 1 DREEDEEDAYERR 13 2 P49756 P49756 RBM25 RNA-binding protein 25 0 101.2 0.0011533 209530000.0 68473.0 71102.0 57114.0 65680.0 67863.0 63701.0 67251.0 73036.0 105980.0 69894.0 False True 68104.3489760655 73468.58708793344 65155.1547562126 73995.08126567787 76504.9507944854 59297.49980602466 63997.81220623175 78486.31718929324 79862.64905924306 65433.30508073602 1.0408208616702728 1.1228011025468292 0.9957491017123433 1.1308473746569543 1.1692050508542773 0.9062281010084912 0.9780617397710071 1.1994857525911542 1.2205198707401856 1.0 15.997737523597312 1.7122324542790943 10.974194548217776 1.1563924091808688 1.052193562678868 0.16140063499652102 0.09243517060666523 0.17521511737243428 50.08306698898415 0.043924813323976936 0.02390001413625778 51.55044923446761 -1.7122324542790943 -0.10419884650200073 DREEILLQELEPVISR ddPTM_BT-474_Trastuzumab_2h_R1 3 DREEILLQELEPVISR 16 1 Q5JU69 Q5JU69 TOR2A Torsin-2A 0 ;; 155.63 2.1931e-07 64733000.0 43911.4 52938.0 52054.0 50671.0 53149.0 54939.0 56933.0 47358.0 56403.0 53952.0 False True 43674.9859014152 54700.00932830324 59382.75073852108 57085.94340458534 59917.21011119621 51141.19624249519 54178.9332848194 50892.09443905134 42503.236411478436 50508.737169368935 0.8647016011301493 1.0829811314600855 1.175692643817153 1.1302191779842232 1.1862741669877475 1.0125217756089497 1.072664578865699 1.007589919906271 0.8415026546586193 1.0 15.624245351188605 1.5281193455684363 3.340575462601952 0.9197888900962379 1.082987540114884 0.2953033584423297 0.093603539532615 0.24393976553398958 5.914687110025426 0.06433936973948011 0.02475460113673903 33.73800090699818 -1.5281193455684363 0.1631986500186462 DREGFFTNGLTLGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DREGFFTNGLTLGAK 15 1 C9J0J7;G5E9Q6;P35080-2;C9J712;C9JQ45;C9J2N0;P35080 C9J0J7 PFN2 Profilin;Profilin-2 0 ; 157.03 1.8435e-06 1134780000.0 778170.0 895860.0 793260.0 814640.0 765330.0 932790.0 1005300.0 817870.0 1196500.0 962020.0 False True 773980.4191828154 925678.158541195 904944.112860476 917773.3404730784 862790.2390336934 868308.4228514738 956669.7983810607 878903.6124597094 901638.6072785845 900623.0599732412 0.8593833020507063 1.0278197391133848 1.0047978483777256 1.0190426841839324 0.9579926135350434 0.9641196871833068 1.0622310719086903 0.9758839757954042 1.0011276052662625 1.0 19.780563892026766 4.74537702359014 24.950021258736566 1.0005310316025673 0.8593832357686114 0.6771641387891215 0.029420869070964868 460.0769006514466 1683970.6390808793 0.006890270285155963 0.06923099436953661 55638.70633595003 -4.74537702359014 -0.14114779583395587 DREGPTDHLESACPLNLPLQNNHTAADMYLSPVRS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 DREGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPK 37 2 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 DREGPTDHLESACPLNLPLQNNHT(0.01)AADMY(0.011)LS(0.145)PVRS(0.833)PK 138.04 8.2105e-10 235080000.0 51007.0 45472.0 39239.0 41849.0 41450.0 57124.0 63036.0 48415.0 78393.0 53275.0 True False 50732.383979410464 46985.50803159553 44763.510128497874 47147.07910912536 46728.411806601864 53175.152335431965 59986.707859095324 52027.97314638855 59074.095562382 49874.94388897779 1.0171918006031515 0.9420663837975601 0.8975149972728185 0.945305907793607 0.9369115664695254 1.066169667354423 1.2027423628310527 1.043168554980301 1.1844443513336402 1.0 15.606027597803951 2.645112607862043 4.100296852214588 1.109633891205516 0.9443908421768662 0.6009794449887798 0.06219601997253779 0.1464926767621838 4.426655085942162 0.01953822704290804 0.018423174397524663 441.68495663937165 -2.645112607862043 -0.16524304902864972 DREIQLEISGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DREIQLEISGK 11 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 0 ; 109.84 0.0011925 227580000.0 378760.0 429150.0 380160.0 392840.0 404590.0 460060.0 455820.0 431200.0 588200.0 434280.0 False True 376720.7982441922 443433.99832334666 433683.2235900444 442573.503721207 456112.13830719085 428257.1350647509 433770.245198503 463378.3335892339 443245.99147619127 406563.8785941862 0.9265968229809662 1.0906871507047053 1.0667037738070368 1.0885706454088706 1.121870786662928 1.0533575598146483 1.0669178154694676 1.1397429973156994 1.0902247219030972 1.0 18.63312251822758 4.739540857705233 24.303026852068907 1.0863077486879897 0.9265967469614578 0.606497452030822 0.03668068479022805 35.244933435360394 873637.806046333 0.008412614506845415 0.05170081936354444 54896.01984436147 -4.739540857705233 -0.15971100172653196 DRELALR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRELALR 7 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;Q5JVM0 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;; 151.04 0.0017405 927250000.0 509800.0 598360.0 593630.0 564460.0 465512.0 589850.0 593740.0 492698.0 763100.0 622600.0 False True 507055.29344410467 618276.0508837414 677207.9440755412 635920.5781246132 524792.1938942065 549075.0578575472 565018.5278929388 529465.6266297497 575044.2300161195 582865.1349653226 0.8699358788620489 1.0607531893643383 1.1618604432667456 1.0910252474827598 0.9003664182545915 0.942027623405909 0.969381241042243 0.9083844527109176 0.9865819647118397 1.0 19.152802581490427 3.2413128871381884 24.99738378601726 0.9448766214434696 1.0552384282094298 0.27347079673244146 0.07464299656638045 86.05317247125224 781565.9787409831 0.02143640160071396 0.027771570017726607 1743.0622090134414 -3.2413128871381884 0.11036180676596019 DRELDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRELDLR 7 1 P09661;H0YKK0 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 0 ; 133.23 0.0030018 2213400000.0 2670800.0 2914900.0 2694700.0 2803200.0 2634400.0 2952200.0 3016600.0 2554800.0 3593300.0 2923600.0 False True 2656420.709553774 3011920.684405738 3074090.337247717 3158084.8325814265 2969875.224687864 2748121.36273129 2870675.533468924 2745452.1490115346 2707779.3627531435 2737013.34498011 0.9705545332564238 1.100440628077254 1.123155041565958 1.153843417816575 1.0850788251123584 1.0040584448634688 1.0488350518034413 1.0030832162535495 0.9893190209391621 1.0 21.38417103825784 2.7718499985337877 6.14426935681121 1.0119841564752174 1.093562272502497 0.4029031407977912 0.046792694282734644 0.20070437441895944 24.079249975956266 0.014914015538523343 0.01555889796723404 591.3573493093717 -2.7718499985337877 0.08157811602727949 DRELWVQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRELWVQR 8 1 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 ;; 125.56 0.001146 1964520000.0 1298020.0 1537380.0 1577280.0 1406850.0 1280330.0 1384290.0 1597060.0 1256150.0 1868820.0 1563090.0 False True 1291031.604543578 1588550.7639341645 1799347.3140364725 1584957.0657524192 1443372.4363895438 1288597.290568152 1519804.1064383346 1349890.2916004532 1408274.3519050241 1463332.2579713224 0.8822545922232237 1.085570795887762 1.2296232138905907 1.0831149638905044 0.9863600207860861 0.8805910506986208 1.0385912687698837 0.9224769591779939 0.9623749795944311 1.0 20.480825948167745 3.1731089350788464 4.595752276671618 0.9578493559282184 1.0828773581447477 0.2525083020096417 0.08803279924145803 0.26221613785197706 10.809392810323018 0.026158112650254754 0.03218024265210953 1489.7347044155342 -3.1731089350788464 0.12502800221652932 DRENYDR ddPTM_BT-474_Trastuzumab_2h_R1 5 DRENYDR 7 1 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;;; 164.57 0.001088 1858267000.0 1494004.0 1606625.0 1585436.0 1452474.0 1599404.0 1404277.0 1699173.0 1557063.0 1886044.0 1595036.0 False True 1485960.4484634507 1660100.5418996774 1808651.6079432482 1636357.0594744852 1803078.6189897764 1307202.6363024889 1616977.510518792 1673258.9476657053 1421253.7278948026 1493239.4369009777 0.9951253708831628 1.1117443732567083 1.211226788717064 1.0958437200604139 1.2074946418049533 0.8754139517071797 1.0828655274967935 1.1205563597612547 0.9517922529855145 1.0 20.51001408558928 2.7716670050471333 24.995628796386132 1.0287539669892072 1.1268399587437137 0.3045614725860959 0.08589675204268449 970.1201828679734 732448.0738678558 0.026712786481441625 0.028331438090694442 591.10822860353 -2.7716670050471333 0.0980859917545065 DREPEREER ddPTM_BT-474_Trastuzumab_2h_R1 3 DREPEREER 9 2 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 0 ;; 143.5 5.725e-05 111657000.0 38490.0 47149.0 49163.0 50087.0 41687.0 46315.0 50914.0 41416.4 51877.0 52732.0 False True 38282.77411664103 48718.32596282763 56084.72306754354 56428.00906446418 46995.59235179281 43113.353063782844 48451.09530963227 44507.10207621787 39092.60846618564 49366.59861386347 0.775479275290605 0.9868681928826714 1.1360864358151959 1.1430402468242502 0.9519714477269087 0.8733304354429526 0.9814550054097894 0.9015630674566887 0.7918837749378054 1.0 15.591247625560998 3.0086782696750434 24.952968564421095 0.9098044346365427 1.0213993068767537 0.1573060787354994 0.10871582894058636 337.897833879838 971562.0413674139 0.03263571349013286 0.03895031091123584 1020.1834401256262 -3.0086782696750434 0.11159487224021103 DREPHGYS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 3 DREPHGYSPER 11 1 Q9HCM7;A0A3B3IRR3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 DREPHGYS(1)PER;DREPHGYS(1)PER;DREPHGYS(1)PER 175.27 6.0689e-06 637230000.0 520590.0 558730.0 488480.0 493330.0 471200.0 545810.0 617600.0 461520.0 620100.0 580620.0 True False 517787.2012829863 577326.9902905821 557253.7380557264 555785.527417736 531204.5269787887 508079.439398539 587724.3285388877 495960.9659510739 467284.6639142912 543564.3345062095 0.9525775854174835 1.0621134493951734 1.0251845139213425 1.0224834341322793 0.9772615553618895 0.9347181320498041 1.081241522354101 0.9124236718025661 0.8596676313187231 1.0 19.05209127248646 1.6223801950194487 9.708620424259088 0.9138884080681253 1.0070224393469531 0.3358046073270571 0.053453583321455424 0.09783798244935306 24.527410728443996 0.02539888454748512 0.013085544108601464 41.91603506726973 -1.6223801950194487 0.0931340312788278 DRES(ph)EKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRESEKDR 8 2 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 DRES(1)EKDR;DRES(1)EKDR 82.417 0.016009 227219000.0 544690.0 362930.0 306440.0 314430.0 340840.0 281430.0 415550.0 423750.0 760050.0 474330.0 True False 541757.4495607481 375009.9056541821 349584.08837577107 354236.8057607661 384243.9536830438 261975.4065149611 395448.25894484186 455372.3767589 572745.8616482132 444057.85330565664 1.2200154676418755 0.8445068651810397 0.7872489716675345 0.7977266996265363 0.8653015610976226 0.58995782771268 0.8905331951705051 1.0254798409013954 1.2898000956059599 1.0 18.76038812227325 1.615186913059659 3.2189078948560472 1.147048018738337 0.8404137390630733 0.3452825772104797 0.16063652656039107 0.2078915792215016 5.07714279275925 0.10095813330508357 0.042288913409847646 41.227491712838486 -1.615186913059659 -0.3066342796752637 DRESEKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRESEKDR 8 2 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 136.63 0.00044013 157430000.0 312150.0 273600.0 243150.0 223430.0 221480.0 182450.0 315010.0 256760.0 468160.0 306410.0 False True 310469.4190831254 282706.61060530704 277383.40650231286 251716.21509120616 249684.16518519103 169837.6609411029 299771.76284494 275920.7350008616 352788.24102260073 286854.65146920097 1.0823231120463805 0.9855395725931281 0.9669824250073037 0.877504386984753 0.8704204861464453 0.5920687012437658 1.0450301618243967 0.9618834262845714 1.229850167029552 1.0 18.129960386525145 1.5842087884589884 2.411344450492451 1.1056265696540064 0.9035076144774187 0.22720381163297498 0.13830121958661507 0.3732162339698745 4.798419250457713 0.10380061335065136 0.038545566240591994 38.38917583248375 -1.5842087884589884 -0.20211895517658773 DREVGIPPEQSLETAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DREVGIPPEQSLETAK 16 1 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 ;;; 158.98 8.475799999999998e-09 962470000.0 1226330.0 1043700.0 1025130.0 951940.0 948960.0 1317090.0 1219260.0 1171650.0 1744130.0 1317430.0 False True 1219727.5755380727 1078438.923570026 1169459.3934103078 1072455.506395393 1069804.4310734102 1226042.6683963686 1160279.7357744873 1259084.4725181472 1314312.531644628 1233350.4894914313 0.9889545477385135 0.8743977748082926 0.9481971291814473 0.8695464229617464 0.8673969323306802 0.9940748220742378 0.9407542670639596 1.0208651014014087 1.065643985909132 1.0 20.2341514076679 2.0081975940718197 1.3367736508179489 1.0352354628649574 0.9118355624912403 0.5304612918765529 0.04491689030501593 0.31852412567472943 1.05879590972441 0.030693302609130807 0.014496287814473803 101.90549293177178 -2.0081975940718197 -0.12339990037371706 DRFFQGS(ph)QEFLASASASAER ddPTM_BT-474_Trastuzumab_2h_R1 1 DRFFQGSQEFLASASASAER 20 1 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 DRFFQGS(1)QEFLASASASAER 97.059 0.0012406 0.0 86217.0 144610.0 118000.0 119440.0 138370.0 131840.0 146670.0 128620.0 122350.0 132140.0 True False 85752.81725160911 149423.25643140907 134613.37432561346 134561.09175354085 155990.59931675496 122726.2111179777 139575.01176618942 138218.27751912616 92198.4819060049 123706.71206925416 0.693194539061086 1.2078831773312197 1.0881654849112268 1.0877428516426022 1.2609711850511995 0.9920739874589217 1.1282735546964644 1.117306209235826 0.7452989442835555 1.0 16.916564254511158 -1.2073934442836418 6.070372622407891 0.9999991058043377 1.0579233984040484 0.0 0.17581038659082987 1.968915285405961e-06 2.570826036755267e-07 0.15748513933738723 0.03711903028848056 0.062030681949836276 1.2073934442836418 0.05792429259971066 DRFGIDDQDYLVSLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRFGIDDQDYLVSLTR 16 1 Q8TBX8;Q8TBX8-3;F8VNT5;F8VU68 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 ;; 239.75 7.068499999999999e-20 1464550000.0 671205.0 831882.0 709892.0 744061.0 701591.0 734429.0 772486.0 682184.0 889911.0 759921.0 False True 667591.3068578865 859570.6894867108 809838.6231081216 838259.0463097079 790934.4551943458 683659.6518899051 735117.9009969082 733092.0341401616 670604.3582464616 711422.1911789001 0.938389770709315 1.2082427286423458 1.1383375907435995 1.1782863350391504 1.1117652288631672 0.9609760004210867 1.0333075213450145 1.030459891791332 0.9426250214871719 1.0 19.440346451091884 2.812933281815924 6.369703712609409 1.0017402460340334 1.1259598487177884 0.409784924242264 0.07207230357425623 0.2326475547795494 16.250618550575954 0.0213178381081696 0.022602491774361223 650.0298222983233 -2.812933281815924 0.12421960268375498 DRFPEAQWR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRFPEAQWR 9 1 B4DYU2;Q96MW5;H3BQV3;H3BSH5;A0A087X1T3 B4DYU2 COG8 Conserved oligomeric Golgi complex subunit 8 0 95.483 0.0057558 0.0 119830.0 140390.0 129640.0 125030.0 113880.0 115600.0 120950.0 103320.0 157430.0 103650.0 False True 119184.84859436472 145062.796282453 147892.18514891985 140858.78518038537 128381.94298035734 107608.84409312974 115099.18642613066 111030.26304832927 118633.48595392187 97034.9682607705 1.2282669921019496 1.494953818015513 1.5241122638539575 1.4516291158239296 1.3230482297406991 1.1089697458749421 1.1861619423300538 1.1442293952211948 1.222584889553504 1.0 16.566217121130663 2.939273448333817 3.1987336167953444 1.1461094010204256 1.4354455622160158 0.6900026748627496 0.09260248892119634 0.14303900890165247 2.8915241398509233 0.02865309056359443 0.031871038279181335 869.5077321260063 -2.939273448333817 0.28933616119559025 DRFTDILVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRFTDILVR 9 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 194.12 2.9907e-05 583570000.0 252860.0 267790.0 265750.0 291900.0 276620.0 292590.0 273950.0 257190.0 398610.0 300990.0 False True 251498.62985538715 276703.22826752684 303165.29005959164 328854.5100708186 311845.91734480584 272363.9419827747 260697.9919093721 276382.82378435775 300377.90660034784 281780.5605094964 0.8925336417836789 0.9819812543747195 1.0758914295273911 1.1670588967393856 1.10669776786925 0.9665817311538623 0.9251808976389135 0.9808441834476486 1.065999393489831 1.0 18.10421256080431 1.2383006376110877 24.999981480984154 1.0329996686096723 1.0139861942542379 0.010203989434816485 0.08064980122299484 64.14524634871478 6162131.493610689 0.07058140969629953 0.021741916425782166 17.310142282210318 -1.2383006376110877 -0.019013474355434434 DRGDAYYDT(ph)DYRHSYEYQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRGDAYYDTDYRHSYEYQR 19 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 DRGDAYYDT(0.998)DYRHS(0.002)YEYQR 183.15 1.3202e-12 1163700000.0 286410.0 277880.0 212810.0 278010.0 307420.0 311810.0 319100.0 256810.0 324450.0 327260.0 True False 284868.00038314273 287129.0678179927 242771.79822232062 313206.03749499255 346568.11477890343 290255.3086217884 303663.91391962254 275974.4662547565 244493.64490725973 306373.98661861755 0.9298047903060189 0.9371848797836044 0.7924034311846762 1.0222997094230448 1.131193018715132 0.947388881886718 0.991154364217062 0.9007764311214086 0.7980235123930802 1.0 18.224934281590247 -1.5890491545405565 2.806275942138222 1.0040413241230148 0.9422174895061732 0.03507780411367267 0.09469920462899784 33458611.703807477 34202972.00021913 1007944.9122640482 0.024339617742022455 0.025760295790025117 1.5890491545405565 -0.0618238346168416 DRGDAYYDTDYRHS(ph)YEYQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRGDAYYDTDYRHSYEYQR 19 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 DRGDAYYDT(0.001)DYRHS(0.999)YEYQR 188.3 8.597e-15 670560000.0 189790.0 199850.0 183010.0 230130.0 165700.0 218020.0 241350.0 203600.0 242000.0 238940.0 True False 188768.19172765134 206501.88643812374 208776.21724856403 259264.43440423976 186800.91281915392 202948.7905638767 229674.9784534654 218793.66585985135 182362.3426338632 223690.64463317418 0.8438805835496989 0.9231583501257375 0.9333256542352586 1.159031191623603 0.8350859425770131 0.9072743784018701 1.026752722851261 0.9781082540069868 0.8152434936781356 1.0 17.771145394564012 4.63162596282571 2.2988287495305166 0.9611933780687898 0.8305332135279566 0.11977494822776802 0.09274192916164263 0.9763087525694075 7.217030353555402 0.023013448238711535 0.23312909517496228 42817.95908399541 -4.63162596282571 -0.13066016454083318 DRGEEDADGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DRGEEDADGSK 11 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 115.34 0.00079312 818620000.0 1125600.0 860580.0 749180.0 682388.0 706130.0 726120.0 934620.0 937580.0 1352150.0 944910.0 False True 1119539.8946659165 889223.8850684044 854658.0320107046 768778.2508331825 796051.4699395847 675925.0335026236 889408.860004882 1007546.9805347711 1018930.7503817275 884605.0348218482 1.2655816444582888 1.005221370063179 0.9661464703090068 0.8690638426990276 0.8998947989256049 0.7640981080768425 1.0054304746117586 1.1389794777029303 1.15184823765663 1.0 19.75467392794609 1.916124292238338 5.516870202932666 1.1060603922482515 0.9514665609289779 0.18034482089599257 0.12690563060263027 0.35388927220992794 17.491781569309474 0.059081658830025176 0.03561231217250494 82.43740117021107 -1.916124292238338 -0.15459383131927362 DRGFGAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRGFGAPR 8 1 P17844;P17844-2;J3QRQ7;J3KRX8;J3QR02;X6RLV5;J3QKN9 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;; 99.802 0.005978100000000001 486565000.0 799130.0 1351260.0 1279460.0 1275740.0 1200680.0 797380.0 1082570.0 898110.0 1131520.0 1253450.0 False True 794827.5728716899 1396235.8722460796 1459596.8467343163 1437248.5531954316 1353579.4810120785 742258.997430621 1030201.9532809963 965131.5287101734 852672.0575911946 1173453.7478674657 0.6773403504962522 1.1898516450124081 1.243846934220341 1.2248020476370407 1.1535004966935918 0.6325421847938522 0.8779229306252565 0.8224708732356267 0.7266345683762719 1.0 20.162329547923843 2.7557834715359304 24.681190032274067 0.8084318450578266 1.1181403041228832 0.39704419700189564 0.17527943645963448 664.8602382952961 952775.9007066404 0.05284423363849205 0.055920691087168996 569.8800733600779 -2.7557834715359304 0.3097084590650566 DRHEASGFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRHEASGFAR 10 1 H0Y6J6;Q5W012;Q96I25;Q5W010;Q5W011 H0Y6J6 RBM17 Splicing factor 45 0 ; 84.605 0.013504 45926000.0 29141.0 48143.0 44781.0 55875.0 47141.0 35550.0 40450.0 29059.0 38757.0 47507.0 False True 28984.108093869454 49745.41065194194 51085.77555657032 62948.76927100719 53144.12692340209 33092.51217569859 38493.27896599415 31227.530138612106 29205.85666719272 44475.06258721101 0.6516934751251807 1.1185011950100423 1.1486386434284692 1.415372247033293 1.194919665805797 0.7440689287577187 0.8655025249377176 0.7021357210544256 0.6566793831919414 1.0 15.440709015265503 2.7347954069765263 24.697223639077244 0.7754862508633846 1.1261048807039031 0.37900802217067253 0.19825101476636953 276.1542072328085 1811377.338889255 0.0646500551288034 0.06313402467939137 542.9944704195827 -2.7347954069765263 0.3506186298405185 DRHS(ph)PPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIR 36 2 Q12873-3 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 DRHS(1)PPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIR 72.348 0.0020401 468640000.0 84877.0 105990.0 95556.0 71073.0 98344.0 88299.0 96555.0 47921.0 110990.0 73488.0 True False 84420.03166272127 109517.81307769207 109009.45421235861 80070.83451272122 110867.52546944408 82195.09796348841 91884.2657740807 51497.108357907375 83638.00168980368 68797.93292375785 1.2270722109670926 1.5918765059272952 1.5844873469260092 1.1638552367766055 1.611495008030371 1.194732086712218 1.3355672455436594 0.7485269712242181 1.2157051547245128 1.0 16.070077598467467 1.8852947185501907 6.385573254577333 0.9716328155161438 1.4005777340103447 0.4868632908847431 0.18815374070625818 0.18361110538829553 8.989238929292062 0.07921876930165783 0.04834095968337343 76.78824087579117 -1.8852947185501907 0.4289449184942009 DRIELLQDAEPLDFNAETFTDDPLESESGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRIELLQDAEPLDFNAETFTDDPLESESGR 30 1 Q68DH5 Q68DH5 LMBRD2 LMBR1 domain-containing protein 2 0 ; 102.91 0.00034262 115474000.0 38024.0 39813.0 39109.0 42245.0 47117.0 49093.0 40432.0 33927.0 44719.0 44410.0 False True 37819.28300886356 41138.15163753329 44615.20725847815 47593.21266852256 53117.07066566128 45699.31646249148 38476.14969476084 36458.805017815226 33698.601653899714 41575.71577868611 0.909648392109023 0.9894754874821147 1.0731073758530512 1.144735857871179 1.2775984651331456 1.099182914991913 0.9254476795919826 0.8769254920803051 0.8105356942808277 1.0 15.343453481100997 2.171694503483914 4.524775255758255 0.8873204892471503 1.0895883280588483 0.4338177601359433 0.10008727960739627 0.20306273553481666 8.100538917350415 0.04229532539760042 0.0310414120157251 148.48907555628676 -2.171694503483914 0.20226783881169796 DRIPQILTK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRIPQILTK 9 1 Q9H993 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 ; 150.46 7.77e-05 2622800000.0 1670400.0 1716010.0 1517910.0 1552020.0 1543420.0 2148140.0 2203350.0 1880640.0 2937720.0 2501070.0 False True 1661406.751998886 1773126.3555000508 1731618.5340897636 1748505.5728678054 1739965.38843294 1999644.1379776434 2096765.5428856155 2020982.9064964226 2213758.26943121 2341449.571326243 0.7095633287792026 0.7572771915372566 0.7395497880011743 0.7467620034530222 0.7431146114530194 0.8540197331027742 0.8954989116839984 0.8631332193721764 0.9454648507237735 1.0 21.158970535833927 2.039668865936855 0.5081059376209033 0.9966681348545026 0.7147893880945518 0.924715429800543 0.02609375554519464 0.2366936307131309 0.1326434995738977 0.026845982916736025 0.020970683880918915 109.56424892386124 -2.039668865936855 -0.2818787467599507 DRKNS(ph)ASAER ddPTM_BT-474_Trastuzumab_2h_R1 2 DRKNSASAER 10 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 DRKNS(0.827)AS(0.173)AER;DRKNS(0.803)AS(0.197)AER 110.51 0.0014777999999999998 438370000.0 567590.0 558690.0 450140.0 477020.0 474790.0 475580.0 596130.0 579030.0 890420.0 688290.0 True False 564534.1585051769 577285.6589147625 513515.7993129799 537410.6830900377 535251.6921991913 442704.2739949012 567292.9144622516 622240.1588547641 670987.9220167128 644362.7429252841 0.876112352403088 0.8959016722382112 0.7969358951166482 0.8340188643593756 0.8306682812995217 0.6870420098857798 0.880393723396933 0.9656674996911092 1.0413201715706832 1.0 19.297513554218675 1.7206227537334562 2.7820146650205526 1.0145788706545151 0.8220447774281934 0.688966265173689 0.05484390429387189 0.13792658796895443 2.2979839080997206 0.03480471727727485 0.015645694136164626 52.55605442877955 -1.7206227537334562 -0.19253409322632176 DRKPGSHASS(ph)SAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRKPGSHASSSAR 13 2 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 DRKPGS(0.001)HAS(0.077)S(0.461)S(0.461)AR 50.608 0.086811 18060000.0 11321.0 12062.0 14583.0 13247.0 11697.0 12112.0 17424.0 14275.0 15080.0 15005.0 True False 11260.04899388135 12463.476378367031 16636.15964229171 14924.068841754495 13186.543616449253 11274.7259485812 16581.13455385616 15340.272986981236 11363.736061647349 14047.368053573184 0.8015771318113337 0.8872463746115584 1.1842901516387636 1.0624103237587135 0.93871987735774 0.8026219506445753 1.180373041456579 1.0920389448384376 0.8089583769933893 1.0 13.778012228732173 2.2313640739272262 24.99991143703985 1.0403138666425198 0.9592392788793596 0.051825149046107355 0.13918520259886194 522.3999134936547 1814736.036638818 0.05431051810516851 0.04093661797505969 170.35860452090384 -2.2313640739272262 -0.08107458776316023 DRKPGSHASSS(ph)AR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRKPGSHASSSAR 13 2 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 DRKPGSHAS(0.002)S(0.134)S(0.864)AR 112.5 0.00046743 20091000.0 15574.0 12074.0 12419.0 16537.0 12142.0 18154.0 18129.0 20472.0 19369.0 21052.0 True False 15490.151314434072 12475.875791112867 14167.487252116896 18630.582504423197 13688.211728727612 16899.05670991934 17252.031010494626 21999.724594709634 14595.76948130288 19708.443336476026 0.7859652358116576 0.6330218768735907 0.7188536918030441 0.9453096922141008 0.6945354077454571 0.8574526369945654 0.8753624381163013 1.1162588652546164 0.7405845927105413 1.0 14.266526209739297 2.3180027781039176 2.2676480975143845 0.9667366690571342 0.7577969500007625 0.3319011018460504 0.11729719295424977 0.31363261527528935 3.3083325281599563 0.0500099478393089 0.03664066030979959 207.9709990592996 -2.3180027781039176 -0.20893971905637165 DRLEFWCTDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRLEFWCTDVK 11 1 Q9UNM6;J3KNQ3;Q9UNM6-2;H0YD73 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ; 130.1 0.00021088 430570000.0 654010.0 576100.0 560420.0 540700.0 523840.0 652160.0 659850.0 625710.0 880760.0 690220.0 False True 650488.882827342 595275.1402401961 639322.2647420374 609152.5645607793 590547.9189570637 607077.7142195102 627930.5346282137 672403.6574910003 663708.4995793451 646169.5686729273 1.0066844902078653 0.9212367296447344 0.9894032398570664 0.94271317328024 0.9139209699551516 0.9395021735026888 0.9717736103200092 1.0405993876683968 1.0271429230912845 1.0 19.30155328298121 1.8922783125122378 4.242911909556723 1.0252724953116132 0.9506258697928813 0.5520226492877449 0.028231697564183443 0.15692693836065333 4.512599825015 0.013100416292944526 0.00748220479552653 78.03300156422962 -1.8922783125122378 -0.07464662551873191 DRLGS(ph)YSGPTSVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRLGSYSGPTSVSR 14 1 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YFI4 V9GYZ0 PANK2 Pantothenate kinase 2, mitochondrial 1 DRLGS(0.991)YS(0.009)GPTSVSR;DRLGS(0.997)YS(0.003)GPTSVSR;DRLGS(0.975)YS(0.021)GPT(0.002)S(0.002)VSR;DRLGS(0.673)YS(0.266)GPT(0.017)S(0.017)VS(0.026)R 145.73 2.236e-05 1319850000.0 652970.0 723570.0 600200.0 672930.0 617240.0 721510.0 666930.0 596810.0 1001690.0 753310.0 True False 649454.482071787 747653.5900426989 684702.9429680778 758122.869002933 695841.8553318924 671633.7119518507 634668.0479799871 641346.9927397735 754836.9214583243 705233.1108588614 0.9209075298249328 1.0601510033075108 0.9708888202004852 1.074996135787868 0.9866834733333324 0.952357031469932 0.8999407971742318 0.9094113462124818 1.070336757925409 1.0 19.42774068555333 2.8797144252417057 4.307477119482957 0.9513772751160872 1.0101852157772577 0.058742077120964575 0.061034202843947054 0.41783890397914686 12.758558447676402 0.018613443805793613 0.019962645861403592 758.0789285843446 -2.8797144252417057 0.058807940661170566 DRLIEVER ddPTM_BT-474_Trastuzumab_2h_R1 2 DRLIEVER 8 1 Q3V6T2;A0A2U3TZV9;A0A2R8Y4X4;A0A2R8YG73;A0A2R8Y7B1;A0A2R8Y4W8;Q3V6T2-5;Q3V6T2-4;Q3V6T2-2;Q3V6T2-3;H7C2C6;A0A2R8Y820;A0A2R8Y885;A0A2R8YCU9;A0A2R8YGU1;A0A2R8YDS8;A0A2R8Y7D4;H0Y470 Q3V6T2 CCDC88A Girdin 0 ; 81.548 0.02059 174780000.0 147903.0 229450.0 210980.0 205890.0 180588.0 177975.0 196634.0 174084.0 237550.0 187873.0 False True 147106.7066815681 237087.10454454622 240684.1501289654 231955.65288962272 203584.8113710642 165672.00715808602 187122.06220517404 187075.03206064022 179008.9855069181 175882.7842938324 0.8363905954309288 1.3479835760870431 1.3684349556740862 1.3188081700032344 1.1575027777076372 0.9419455566572786 1.0639020922739382 1.0636346974591322 1.0177743445763459 1.0 17.424254750712187 2.9634519174363247 5.947272046310593 1.0297621012760771 1.2384406144553863 0.2997688550888411 0.1442694583966855 0.2350458954725167 23.81656391931704 0.04368813967033882 0.04769406006514065 919.2886908628362 -2.9634519174363247 0.2086785131793092 DRLSASSLTMESFAFLWAGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DRLSASSLTMESFAFLWAGGR 21 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRI6;A0A1W2PNG3;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;; 232.54 1.1848e-26 1118315100.0 565557.3 776027.0 729995.7 786881.5 732147.4 746266.0 793481.0 699344.0 1008268.0 815148.0 False True 562512.4023361234 801856.5895767712 832772.7493236305 886500.6172192212 825382.0316123725 694678.3879412069 755097.2926382202 751532.6004768761 759793.8614990079 763124.5567566868 0.7371174172756622 1.050754536041531 1.0912671358171877 1.1616722452058 1.0815823240183526 0.910307998596744 0.9894810564705416 0.9848098764779933 0.9956354500347434 1.0 19.541559026580927 2.752350732190193 24.645114189490833 0.9770527403119732 1.037270821352662 0.04158748924658584 0.10778223330007197 2096.113566558492 3746082.4579287604 0.03386100446598215 0.035746266264926024 565.3933969427927 -2.752350732190193 0.06021808104068882 DRNLAPDEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRNLAPDEKR 10 2 O95232;J3KPP4;D6RDI2;C9JL41;O95232-2;E7EN55 O95232 LUC7L3 Luc7-like protein 3 0 ; 132.32 0.00012749999999999998 145424000.0 89760.0 101059.0 106799.0 95224.0 97136.0 100960.0 107118.0 99628.0 173518.0 122280.0 False True 89276.74213327351 104422.68772354457 121835.37088645075 107279.34863646337 109505.69382982103 93980.87283427663 101936.29310950219 107062.74726073313 130756.81392207718 114475.98571082512 0.7798731024583027 0.9121798521772424 1.0642875894881219 0.9371340894802078 0.9565822311977342 0.8209658318355024 0.890460060042644 0.9352419775723235 1.1422204675518466 1.0 16.804685462020856 1.345104562542884 6.610452840039355 1.0693555441418343 0.9148547563006296 0.3944945447157734 0.07902363494619488 0.2126518853131067 11.213611220359802 0.05503189294534238 0.019842756232493874 22.136276076266608 -1.345104562542884 -0.1545007878412047 DRNVATPR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRNVATPR 8 1 P11216;P11217;P11217-2 P11216 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form 0 ;;; 91.087 0.011615 327950000.0 198894.0 293722.0 300588.0 288557.0 264879.0 216249.0 247107.0 195869.0 274919.0 257361.0 False True 197823.17680320083 303498.3592113018 342908.1776422669 325088.2866135842 298609.77058916533 201300.21562539085 235153.49036959012 210485.73938262888 207168.89617586398 240936.00064216251 0.8210610962078982 1.2596638045057313 1.4232334592104117 1.3492723617356148 1.2393738162552956 0.8354924755489794 0.9759998080105905 0.8736168062125416 0.8598503155348323 1.0 17.878290451522705 2.7460749205172825 24.23233144238737 0.9046066607533334 1.2394435410068767 0.4937608597249301 0.15595864667440087 311.0701546762358 1003147.3059825042 0.04913625530367614 0.051166916861158096 557.281877819543 -2.7460749205172825 0.3348368802535433 DRNVIPDT(ph)PPSTPLVPSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRNVIPDTPPSTPLVPSR 18 1 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 DRNVIPDT(0.996)PPS(0.003)T(0.002)PLVPSR;DRNVIPDT(0.986)PPS(0.01)T(0.003)PLVPSR;DRNVIPDT(0.999)PPSTPLVPSR 126.86 4.3135e-05 574561000.0 333066.0 426312.0 356685.0 381065.0 401857.0 413145.0 396990.0 339562.0 422702.0 411362.0 True False 331272.8096631118 440501.5372089536 406903.1476384027 429307.78992852493 453031.10695695004 384585.2585887199 377786.07705092727 364901.84070089855 318532.7560166086 385108.52497527306 0.8602063786678887 1.143837408525914 1.0565934567782653 1.1147709336117393 1.1763725744218156 0.9986412495371616 0.9809860144622455 0.947529896213874 0.8271246554125512 1.0 18.554905534220428 2.189249153906242 1.918132824702933 0.92277063665073 1.075030305579004 0.3179005691364769 0.09031788822614932 0.37669415598982536 2.751657342381895 0.0451641863611838 0.02775765418600986 154.6141203371643 -2.189249153906242 0.15225966892827403 DRPFFAGLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRPFFAGLVK 10 1 Q32Q12;P22392-2;J3KPD9;E7ERL0;E5RHP0;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 ; 155.0 1.2299e-05 3176000000.0 2734600.0 3645600.0 3709200.0 2375900.0 1850470.0 2930800.0 3554200.0 2714800.0 6893100.0 3398600.0 False True 2719877.217442624 3766941.5921882656 4231423.119055637 2676688.696393485 2086116.385905005 2728200.6943611084 3382269.767637484 2917392.161475072 5194387.867807781 3181698.438312152 0.8548507252263298 1.1839404850029023 1.3299258874138775 0.8412766791982437 0.6556612533687076 0.8574667735665049 1.063039075894236 0.9169291867342114 1.6325833414191617 1.0 21.601365672696303 1.273393085235353 24.96458721781897 1.3162930158145212 0.9671090536789402 0.27444967900327144 0.22976304224151303 200.83785815175307 143941.429649051 0.15510285140897773 0.056633123747972185 18.76692356733466 -1.273393085235353 -0.349183962135581 DRPFFPGLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRPFFPGLVK 10 1 Q32Q12;P22392-2;J3KPD9;P22392;F6XY72;O60361 Q32Q12;O60361 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 ; 139.86 3.6771e-05 24776000000.0 16255700.0 17005900.0 17269500.0 13743600.0 12367800.0 15903300.0 17172200.0 14853800.0 25694000.0 17465000.0 False True 16168181.117378041 17571931.10121638 19700895.49081511 15483538.350836944 13942766.020306157 14803942.303341419 16341515.081825564 15962265.982068077 19362057.981960647 16350368.747461211 0.9888572769888472 1.0747116088097306 1.2049205614322398 0.946984046047349 0.8527493315691187 0.9054194759760441 0.9994585036109952 0.976263363145654 1.184197022159948 1.0 23.962819837190835 3.7011893552397863 24.934123333891886 0.9728165344922404 1.0880181055681803 0.214338066436489 0.09457498295662163 783.7576987087989 522923.19970588194 0.025997930545602347 0.04027656088911149 5025.616619380085 -3.7011893552397863 0.11520157107593998 DRPFMGGQKPNLADLAVYGVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRPFMGGQKPNLADLAVYGVLR 22 2 Q9H7Z7;A6NHH0 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 98.993 0.00060487 509940000.0 189910.0 214630.0 179990.0 184490.0 200760.0 249160.0 216960.0 179210.0 264660.0 217510.0 False True 188887.54566098444 221773.82980342544 205331.02749887458 207846.41508381415 226325.59600225327 231936.1556595518 206464.81593231385 192583.5602099409 199438.08926230695 203628.32558032032 0.9276093840219619 1.0891109042486709 1.0083618126982175 1.0207146500442543 1.1114642098895033 1.1390171529356585 1.0139297435359733 0.9457601719264598 0.979422134390824 1.0 17.63557873492638 1.9986533586399724 24.994153253597126 0.971736820929396 1.0529763674786576 0.25405621045296667 0.056930101263081054 62.81931354829344 1165962.5223669088 0.021831903670719233 0.015902751710922775 99.69040460587206 -1.9986533586399724 0.08123954654926169 DRPGS(ph)PES(ph)PLLDAPFSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 2 DRPGS(1)PES(1)PLLDAPFSR;DRPGS(0.999)PES(0.5)PLLDAPFS(0.5)R;DRPGS(1)PES(1)PLLDAPFSR;DRPGS(1)PES(1)PLLDAPFSR 146.68 3.6262e-06 807980000.0 773788.0 874839.0 678468.0 883835.0 802804.0 939895.0 873830.0 687450.0 907494.0 791383.0 True False 769622.0113839286 903957.4872636559 773990.3970504262 995728.4203783551 905036.3308078946 874922.2709248451 831559.5045452326 738751.0098003689 683854.2634965907 740876.2594029255 1.038799666767794 1.2201193867274922 1.0446959086989607 1.3439874847397806 1.2215755591051956 1.1809290145562874 1.1223999878405997 0.997131437840552 0.9230343864003835 1.0 19.498873079244493 1.7819258455665699 2.362709017517502 0.9591320083418862 1.1803472974595048 0.532592066690686 0.0847407466044699 0.20688383083396164 2.2754995823359065 0.052048815916898236 0.023625632449559224 60.523752350404955 -1.7819258455665699 0.22121528911761867 DRPGS(ph)PESPLLDAPFSR ddPTM_BT-474_Trastuzumab_2h_R1 6 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 DRPGS(1)PESPLLDAPFSR;DRPGS(0.999)PES(0.001)PLLDAPFSR;DRPGS(1)PESPLLDAPFSR;DRPGS(0.991)PES(0.009)PLLDAPFSR;DRPGS(1)PESPLLDAPFSR;DRPGS(1)PESPLLDAPFSR 215.89 3.3127000000000004e-15 8753380000.0 2586706.0 2593090.0 2335080.0 2398304.0 2417430.0 2951280.0 3075490.0 2582040.0 3399870.0 3016620.0 True False 2572779.4623060543 2679399.433093994 2663838.9671207927 2701929.0404963507 2725275.3812698047 2747264.9601658466 2926716.7991872774 2774724.936133455 2562017.594423934 2824096.7289416846 0.9110096817647566 0.9487633357721726 0.9432534444806543 0.9567409688225815 0.9650078035007984 0.9727942148764039 1.0363373071445925 0.9825176693481277 0.9071989525599701 1.0 21.429358072938424 3.902155874780503 0.8058210322544086 0.9826914322525784 0.9161862431622075 0.3005435323932377 0.03092487172507485 1.2767942252542883 1.318547740797071 0.013241440707380368 0.06205746673113094 7982.811508929971 -3.902155874780503 -0.06650518909037084 DRPMEESLLLFEAMR ddPTM_BT-474_Trastuzumab_2h_R1 5 DRPMEESLLLFEAMR 15 1 P47897;A0A1B0GVU9;P47897-2;B4DDN1;A0A1B0GTT3;A0A0U1RQQ5 P47897 QARS Glutamine--tRNA ligase 0 ;;;; 261.64 5.3404e-25 953211000.0 364971.0 424515.0 391534.0 397270.0 361273.0 410589.0 426315.0 386230.0 483601.0 433699.0 False True 363006.03668809 438644.72515026346 446658.58392546425 447564.3412669888 407278.9751171642 382205.94885254354 405692.51476854883 415052.44383620075 364424.01347140025 406019.9585116049 0.894059587658705 1.0803526180295544 1.1000902161628534 1.1023210359108404 1.0031008736865414 0.9413476870783417 0.9991935279628705 1.022246407190689 0.8975519696305378 1.0 18.63119112139898 3.012698191227213 23.49318647009764 0.9789936789684227 1.0510209857142028 0.21239862224758432 0.06427035110450191 174.46940318923055 322784.1768285428 0.01868588815402464 0.022316383549123554 1029.6703122691506 -3.012698191227213 0.07202730674578006 DRPPCSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 DRPPCSPSR 9 1 O95758-1;O95758-6;O95758;O95758-5;O95758-4;O95758-2;X6R242;B1ALY4 O95758-1 PTBP3 Polypyrimidine tract-binding protein 3 1 DRPPCS(0.389)PS(0.611)R 56.563 0.073349 643640000.0 127570.0 215400.0 200880.0 192930.0 130330.0 144110.0 151730.0 127530.0 199830.0 178210.0 True False 126883.17729435931 222569.4587879504 229162.15791973946 217354.9182184416 146926.75297356874 134148.01489845064 144390.2402351123 137046.93618421842 150584.5740848134 166836.48522674298 0.7605241570626221 1.3340574664196636 1.3735733979788134 1.3028020694816267 0.8806632001020912 0.8040688145409781 0.8654596147771597 0.8214446378318364 0.9025877875583266 1.0 17.34807529858934 3.2274025880384998 23.88327851656699 0.8626608600233865 1.2157501347737636 0.45393438421030075 0.16722245000768143 99.35313235671495 212660.5959452349 0.04776313690771882 0.057638234097310816 1688.117173467135 -3.2274025880384998 0.3530892747503771 DRPQEADGIDSVIVVDNVPQVGPDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DRPQEADGIDSVIVVDNVPQVGPDR 25 1 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;;;; 272.96 5.174399999999998e-53 9358310000.0 3250470.0 3538830.0 3302920.0 3149310.0 3310650.0 3562690.0 3370570.0 3318210.0 3936970.0 3699780.0 False True 3232969.8306811713 3656617.8172820876 3767942.426504708 3548012.3230939745 3732241.6537400796 3316409.6259701694 3207522.652272213 3565831.6797289713 2966756.4961952064 3463656.872858985 0.9333978362621702 1.0557101790119956 1.087850951989525 1.0243544477214224 1.0775437032997435 0.9574879232285864 0.9260509253691308 1.0294991133996623 0.8565387984712166 1.0 21.723864585894617 2.7202065055875675 23.33966193515188 0.9595307851387401 1.0391381603558072 0.3286008465572119 0.05812734151463329 419.4524781984165 533387.1300014845 0.01827014520972079 0.01726131255841747 525.0570637968515 -2.7202065055875675 0.07960737521706707 DRPSAAHIVEALETDV ddPTM_BT-474_Trastuzumab_2h_R1 4 DRPSAAHIVEALETDV 16 1 Q96KB5;Q96KB5-2 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 0 ;;; 141.85 1.4273e-06 452834000.0 216645.0 244256.0 229165.0 228334.0 237573.0 291963.0 283724.0 252312.0 289093.0 293018.0 False True 215478.60739152227 252385.9133041301 261429.44006211215 257241.06098838738 267826.513344507 271780.2850169757 269999.18618906615 271140.8026543752 217849.903797733 274317.3403746692 0.7855085176067121 0.9200508905467493 0.9530182805981042 0.9377499090543872 0.9763382547333799 0.9907513854055734 0.9842585445757633 0.9884202080847118 0.7941528723637681 1.0 18.06548629633803 4.8599888118085035 1.8139684641566938 0.9583554901766277 0.6878279297228987 0.43715026890816333 0.05665352655543207 1.1047331961065632 2.8701079852039064 0.014162304095428764 0.5628141235883122 72441.72975678994 -4.8599888118085035 -0.27052756045372894 DRPVGGS(ph)PGGPR ddPTM_BT-474_Trastuzumab_2h_R1 7 DRPVGGSPGGPR 12 1 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR 138.81 4.1072e-05 6522431000.0 1309990.0 1495464.0 1317648.0 1289818.0 1337982.0 1587047.0 1494340.0 1358416.0 1577589.0 1475743.0 True False 1302937.1593935713 1545239.6152129234 1503161.3851982704 1453108.8265519822 1508366.0768593682 1477338.176396792 1422053.0652668406 1459787.8998166798 1188813.3295595597 1381559.8182928544 0.9430913827557359 1.1184746362429117 1.0880175909108842 1.051788570651641 1.0917848484644002 1.0693262476483194 1.029309803627629 1.0566230144276265 0.860486324094555 1.0 20.397866598131216 1.2612605943673565 24.260684023072862 0.930243253038903 1.05917315589738 0.4596836245244512 0.054474898143019444 111.19315643948079 118838.83520829694 0.033523606739205604 0.012219493430756168 18.249904423952433 -1.2612605943673565 0.12892990285847705 DRPYDYK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRPYDYK 7 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 ; 64.42 0.067044 409980000.0 870210.0 1712330.0 1577770.0 1945280.0 1814920.0 1301100.0 1304350.0 1091160.0 895630.0 1213050.0 False True 865524.8860494205 1769323.8689246562 1799906.3017773174 2191552.2485459484 2046039.3041263644 1211158.019459955 1241253.6073991226 1172587.8999982087 674913.987327136 1135632.1104556455 0.7621525299263942 1.558007961059464 1.5849378378840906 1.929808278903491 1.801674402554045 1.066505612432891 1.0930067897614297 1.032542043503627 0.5943068896284931 1.0 20.11506411685961 2.602918878816297 5.265056779038165 0.9638628344383416 1.5528207879255043 0.45171551664776277 0.31493388124231164 0.22287332278842628 8.652333337989079 0.10750893652112876 0.1007652404958027 400.79184735581896 -2.602918878816297 0.5889579534871626 DRQS(ph)PLHGNHITISHTQATGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRQSPLHGNHITISHTQATGSR 22 1 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 DRQS(0.999)PLHGNHIT(0.001)ISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR 212.51 1.0087e-23 1736570000.0 194646.0 194502.0 182609.0 199632.0 179966.0 247419.0 210535.0 104690.0 233322.0 195419.0 True False 193598.04756320352 200975.88149105807 208318.7599341184 224905.39073127005 202883.603357947 230315.50689167826 200350.6177281973 112502.49940504837 175822.91945462083 182947.1921133769 1.0582181957907615 1.098545865445742 1.1386824663863555 1.2293459557001052 1.10897358420355 1.2589179655129445 1.0951281373262898 0.6149452096281849 0.9610583109997065 1.0 17.481067747696795 1.9096772824156163 7.983594137167129 0.8230704115414904 1.1502082127441102 0.5710977820080376 0.11169771305280568 0.1802191720298186 14.352944332186269 0.045250335610369126 0.028344873376996937 81.22267386013344 -1.9096772824156163 0.3271378012026198 DRRPVHLDQAAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRRPVHLDQAAFR 13 2 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 180.09 7.422e-06 371590000.0 142697.0 185246.0 199979.0 169433.0 134882.0 162955.0 184660.0 148846.0 236450.0 176129.0 False True 141928.7352071271 191411.80112642833 228134.30495137154 190883.20042764337 152058.4231917506 151690.3044048091 175727.2903302961 159953.6443446732 178180.0657676732 164888.29642837675 0.8607568777252623 1.1608574123972026 1.3835688153310943 1.1576516014922753 0.9221905161583186 0.9199579818007246 1.0657353744122617 0.9700727571902167 1.0806107505942366 1.0 17.331129476099065 3.254976254453397 24.075258055067817 0.9917929724499011 1.1594951380108507 0.2374703578244013 0.12781189186283454 211.51937591778446 310212.2804261333 0.03634184141475778 0.04904586155793912 1798.7725624966488 -3.254976254453397 0.16770216556094963 DRS(ph)GSGPTQDLNTILLTSAQLSSDVAVETPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSGSGPTQDLNTILLTSAQLSSDVAVETPK 31 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 DRS(0.428)GS(0.428)GPT(0.072)QDLNT(0.072)ILLT(0.001)SAQLSSDVAVETPK 72.292 0.0024934 61910000.0 16651.0 17115.0 14919.0 16341.0 15133.0 15724.0 20650.0 17585.0 21981.0 22025.0 True False 16561.352866100024 17684.662428764026 17019.465521727365 18409.76892451953 17060.097849681682 14637.036890314615 19651.0806093394 18897.281994820678 16564.077080309704 20619.345643448807 0.803194880792054 0.8576733100345892 0.8254124944617145 0.8928396294849781 0.8273830869653241 0.7098691269557871 0.9530409426733167 0.916483108707416 0.803327000125848 1.0 14.33171092894166 -4.9999552469830215 0.16952359012212798 1.6018859999817887 0.8122066475758841 0.34608486356562673 0.0645692309359615 154.09777835759917 1.4526120077339135 31.00894638362788 0.2403894064049427 1.0001030529393505e-05 4.9999552469830215 -0.7896793524059046 DRS(ph)PAAETPPLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRSPAAETPPLQR 13 1 Q8TE68;B4DKV7;Q8TE68-2;K7EN83;Q8TE68-3;K7EKX9 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 DRS(1)PAAETPPLQR;DRS(1)PAAETPPLQR;DRS(1)PAAETPPLQR 107.65 0.00075152 793870000.0 439184.0 442802.0 382125.0 391732.0 389125.0 458559.0 480883.0 395296.0 528133.0 425866.0 True False 436819.4821419293 457540.39689053845 435924.8785099582 441325.23103481287 438677.76222542656 426859.8956617768 457620.8521385456 424794.99479241617 397981.69876962807 398686.86727777426 1.0956455253330106 1.1476184305106785 1.0934016499877317 1.1069469984004552 1.1003065268256997 1.0706645507948818 1.147820231108116 1.0654852959991075 0.998231272294066 1.0 18.60489655826397 1.390691352719236 3.3365576445465055 0.998571370580369 1.1079585472927649 0.7872994783676182 0.02261756303510261 0.09986375503676129 1.860401280037226 0.017052917300841172 0.005619546136226026 24.586196749806934 -1.390691352719236 0.10938717671239584 DRS(ph)PHRS(ph)SPSDTRPK ddPTM_BT-474_Trastuzumab_2h_R1 5 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q8IWS0-3;Q5JRC6;Q8IWS0-2;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 DRS(0.999)PHRS(0.842)S(0.155)PS(0.003)DTRPK;DRS(0.998)PHRS(0.598)S(0.401)PS(0.003)DTRPK;DRS(0.997)PHRS(0.668)S(0.33)PS(0.004)DTRPK;DRS(0.996)PHRS(0.561)S(0.436)PS(0.007)DTRPK;DRS(0.972)PHRS(0.528)S(0.45)PS(0.049)DTRPK 125.79 0.00012671 952300000.0 623089.0 752164.0 720584.0 776979.0 834093.0 1075242.0 1081636.0 1001477.0 1096959.0 1031970.0 True False 619734.3580556957 777199.3240472596 822035.9637715925 875344.4617345473 940309.7994934607 1000913.0513874122 1029313.1344292215 1076212.2991371646 826628.1529475211 966108.7910860328 0.6414747115167362 0.8044635668552254 0.8508730811232101 0.906051647403545 0.9732959767775525 1.0360251978064032 1.0654215590690763 1.1139659519373186 0.8556263648302825 1.0 19.88182613091295 4.451952656566265 0.6634530153045208 1.035831862952198 0.5059812444697346 0.7491335043284724 0.06743889316066232 1.1012153100502395 0.471316897334241 0.030834089710104776 0.4173181812736044 28310.833561119027 -4.451952656566265 -0.5298506184824635 DRS(ph)PHRSS(ph)PSDTRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q8IWS0-3;Q5JRC6;Q8IWS0-2;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 DRS(0.673)PHRS(0.451)S(0.849)PS(0.026)DTRPK 66.12 0.08544299999999999 10679000.0 7341.8 5037.5 3881.4 5667.5 4952.9 7701.5 7183.9 6147.2 11957.0 6442.3 True False 7302.272564550659 5205.170142266948 4427.86738226641 6385.004918898132 5583.622456861716 7169.113432380953 6836.387311836962 6605.935278849114 9010.357565591334 6031.146898469484 1.2107601899737754 0.863048144887311 0.7341667276235742 1.058671762831452 0.9257977878599947 1.1886816144704169 1.1335136462306734 1.095303329541765 1.493970834614869 1.0 12.55821665949068 2.737319690949339 24.6011569251646 1.1762742895013272 0.9462900210471955 0.31092881093372593 0.16597047792759928 109.56735276518693 2172141.304676669 0.05141280333849645 0.051012866165166156 546.1597498746111 -2.737319690949339 -0.22998426845413167 DRS(ph)PIRGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSPIRGSPR 10 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 DRS(1)PIRGS(1)PR 91.812 0.048667 1261300000.0 1486800.0 1355900.0 1119000.0 1263000.0 1189300.0 1422500.0 1420400.0 1260300.0 1735300.0 1312800.0 True False 1478795.2339990104 1401030.3118411407 1276545.4734776395 1422895.6705016934 1340750.3054666237 1324165.923204818 1351689.8255450712 1354349.9856737282 1307658.5668286902 1229015.9800553746 1.2032351556017862 1.1399610213188733 1.0386728034407848 1.1577519687234525 1.0909136473605614 1.0774196143040844 1.0998146870996497 1.1019791505173973 1.0639882540581551 1.0 20.22907224353496 5.507415104093449 0.01463641876335534 1.2157287965813008e-07 2.312624885271381 0.5432104190276531 0.03773644441538888 2972.372613058055 5.465090402665446 377.3254696537814 492.35495437295435 321673.366397809 -5.507415104093449 2.3126247636985013 DRS(ph)PLRR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRSPLRR 7 2 Q96PK6;Q9BWF3;E9PB51;Q9BQ04 Q96PK6;Q9BWF3 RBM14;RBM4;RBM4B RNA-binding protein 14;RNA-binding protein 4;RNA-binding protein 4B 1 DRS(1)PLRR;DRS(1)PLRR 60.06399999999999 0.078566 16675700000.0 1845180.0 1787820.0 1809070.0 1799590.0 1725220.0 2183650.0 2089570.0 2023760.0 2165800.0 1862800.0 True False 1835245.7558987704 1847326.5079399878 2063771.3312816736 2027417.909483878 1944916.5408199173 2032699.4152591915 1988489.516167424 2174783.247645053 1632067.6102331444 1743914.509176683 1.0523714013740306 1.0592987776746732 1.1834131320210175 1.1625672582086832 1.115259108508782 1.1655957930064167 1.1402448375214258 1.247069874240445 0.9358644598946869 1.0 20.733897886841575 1.2240798207994352 24.99943818842513 0.9679320958030393 1.145142712666199 0.6016648700626438 0.05614727075742771 186.1824508649356 321413.616611169 0.05623346322325254 0.014315113962764876 16.752507490754958 -1.2240798207994352 0.17721061686315975 DRS(ph)PPKS(ph)PEKLPQSSSSESS(ph)PPSPQPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSPPKSPEKLPQSSSSESSPPSPQPTK 28 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 DRS(0.992)PPKS(0.749)PEKLPQS(0.111)S(0.106)S(0.101)S(0.096)ES(0.178)S(0.442)PPS(0.225)PQPTK 79.559 0.0123 415250000.0 136860.0 67090.0 67916.0 51005.0 52102.0 132860.0 94334.0 82897.0 213650.0 95408.0 True False 136123.16096657547 69323.05009323849 77477.98246354553 57462.2277703395 58736.88086725136 123675.70091879946 89770.70402912464 89083.19508243664 160998.82026332605 89318.9797571017 1.5240115968269599 0.7761289961188418 0.8674302222690279 0.6433372607547134 0.6576080585222004 1.3846519659665737 1.0050574275842759 0.9973601951644963 1.8025152179430837 1.0 16.446679151670693 2.735585507612493 24.97146151239546 1.1983189424896519 0.871802495822908 0.21413996337142194 0.323954150174605 439.8054150009686 3691473.7741492973 0.10257743044379966 0.10057359967954269 543.9832252478623 -2.735585507612493 -0.32651644666674384 DRS(ph)PPKS(ph)PEKLPQSSSSESSPPS(ph)PQPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSPPKSPEKLPQSSSSESSPPSPQPTK 28 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 DRS(0.905)PPKS(0.945)PEKLPQS(0.044)S(0.043)S(0.043)S(0.044)ES(0.056)S(0.055)PPS(0.863)PQPTK 93.374 0.0049372 517620000.0 94485.0 47379.0 44772.0 33829.0 36928.0 72047.0 71302.0 72561.0 136010.0 64231.0 True False 93976.30325827035 48955.98137378969 51075.50843479974 38111.74793143448 41630.561910595716 67066.5604703954 67852.84985990888 77975.87027729211 102492.15794062696 60131.72258907428 1.562840697255287 0.8141456666449269 0.8493937348816277 0.6338043596702027 0.6923227893384821 1.1153274441963377 1.128403560356967 1.296750981344081 1.704460699405432 1.0 15.875838667455097 2.111760578174337 1.7677510280883033 1.3617516319211627 0.8948891171004444 0.2685427919831599 0.2904460787729444 0.4377729243624882 2.629600442688844 0.16505200092208497 0.09145553122513363 129.3482561984435 -2.111760578174337 -0.4668625148207183 DRS(ph)PPKSPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSPPKSPEK 10 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DRS(1)PPKSPEK 109.99 0.001015 138270000.0 484280.0 285050.0 289930.0 254220.0 268950.0 376590.0 391550.0 397990.0 635660.0 354290.0 True False 481672.69028856663 294537.716933636 330749.623883264 286404.22593423596 303199.1883084578 350557.2196975063 372609.2306337459 427690.0347522709 479010.11040761 331678.90887707024 1.452225864826058 0.888020639994327 0.9971982391133871 0.8634984566968219 0.9141346651644713 1.0569174292219856 1.1234034503286598 1.2894700968483503 1.4441982820956065 1.0 18.339427749975826 2.013455941240571 2.4870137056907136 1.2727360175723157 1.0067808419469884 0.20244169575537496 0.18663400703944763 0.3760986415342628 4.40296136541629 0.09385420911217637 0.05278610882214074 103.14684326463984 -2.013455941240571 -0.26595517562532733 DRS(ph)SPPPGYIPDELHQVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 DRS(0.637)S(0.363)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.627)S(0.373)PPPGYIPDELHQVAR 193.53 3.0831e-15 1957760000.0 729900.0 822350.0 702960.0 816640.0 770880.0 824670.0 875930.0 697260.0 901870.0 879990.0 True False 725970.2994995129 849721.4226289275 801930.657762146 920026.5402680138 869046.9986362654 767662.5039643707 833557.9195224531 749293.0818145395 679616.2229388526 823828.2848026566 0.8812155553428406 1.0314302607763381 0.9734196707682159 1.1167697895786632 1.0548885182358612 0.9318234371477788 1.0118102702945277 0.9095258024480531 0.8249488825230743 1.0 19.65198413407829 1.687255663429909 4.767188047293141 0.8983934023985033 1.0044338866284568 0.23069400909945015 0.07290475652782587 0.2028470625320904 10.728090546461836 0.03867715888169821 0.01876566421193151 48.66936314933816 -1.687255663429909 0.10604048422995349 DRS(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_BT-474_Trastuzumab_2h_R1 6 DRSSSAPNVHINTIEPVNIDDLIR 24 1 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y492;A0A2R8Y679 P15056 BRAF Serine/threonine-protein kinase B-raf 1 DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR 265.57 1.4927e-44 1288532000.0 241234.0 278509.0 248177.0 247656.0 267890.0 294537.0 322697.0 273317.0 384093.0 333534.0 True False 239935.22294761674 287779.00370275404 283118.1644068459 279009.224207258 302004.20359157014 274176.3504555203 307086.913287748 293713.30241560447 289438.426732514 312247.5745671765 0.7684134081111891 0.9216372748504461 0.9067105318569457 0.8935512936938197 0.9671947140348319 0.8780735954012492 0.9834725336567242 0.9406423823235027 0.9269517213503434 1.0 18.2523308399498 5.615551663871996 1.0932132876174565 0.939328143964845 1.04953822685092e-30 0.6519075519022083 0.03671630794299752 5.824794262763068 1.365155080845797 0.009910109180638232 9.993023931401922 412621.3198198435 -5.615551663871996 -0.939328143964845 DRSGS(ph)GPTQDLNTILLTSAQLSSDVAVETPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DRSGSGPTQDLNTILLTSAQLSSDVAVETPK 31 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 DRS(0.224)GS(0.733)GPT(0.011)QDLNT(0.03)ILLT(0.001)SAQLSSDVAVETPK 165.21 8.7585e-13 70482000.0 54785.0 53075.0 48723.0 40798.0 47065.0 64016.0 68705.0 61657.0 77240.0 61738.0 True False 54490.043647185725 54841.56929048501 55582.77489209207 45963.022616886825 53058.448773889424 59590.724597454886 65381.47667141233 66258.15842790206 58205.236962973526 57797.82798343892 0.942769746690118 0.9488517337744771 0.9616758420060086 0.7952378873139805 0.9180007385241623 1.0310201382399646 1.1312099252267125 1.1463779996522936 1.007048863145019 1.0 15.818727657458803 2.612733707466717 3.372665395332186 1.09098093122392 0.9111628033547677 0.5886519443077564 0.062274528716725085 0.16165356228252842 3.4197265991260624 0.022050384557745932 0.020527395901217854 409.95265883516976 -2.612733707466717 -0.1798181278691523 DRSPAAET(ph)PPLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRSPAAETPPLQR 13 1 Q8TE68;B4DKV7;Q8TE68-2;K7EN83;Q8TE68-3;K7EKX9 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 DRSPAAET(1)PPLQR;DRSPAAET(1)PPLQR 110.77 0.0016692 2182120000.0 1092030.0 1117160.0 1017730.0 978190.0 1021910.0 1152130.0 1140590.0 1001770.0 1290000.0 1178750.0 True False 1086150.6318159392 1154343.9952625195 1161017.537732261 1102028.7537039206 1152044.1811648866 1072485.9649222968 1085415.304223072 1076527.1642849878 972096.7851143954 1103521.1658213516 0.9842589933538035 1.0460551469380657 1.052102645324537 0.9986475908540275 1.043971078078434 0.9718762069452875 0.9835926467393098 0.975538301962453 0.8809045220178111 1.0 20.073682870471067 2.3164827082072064 1.1656767964662487 0.9496732767198462 1.0271843441782866 0.4258709772011 0.03591233302785023 0.4424295664512569 1.1772735285938456 0.021904275803000105 0.01335767961543548 207.2443541891858 -2.3164827082072064 0.07751106745844039 DRT(ph)PPHLLYSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRTPPHLLYSDR 12 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 DRT(1)PPHLLYSDR;DRT(1)PPHLLYSDR;DRT(1)PPHLLYSDR;DRT(1)PPHLLYSDR 137.91 0.00013553 2020090000.0 584658.0 517227.0 478457.0 442138.0 412624.0 539373.0 526276.0 506169.0 610805.0 499051.0 True False 581510.2662896106 534442.5880246756 545819.5867772046 498112.62546656904 465169.2205859419 502087.4140574707 500818.0193104455 543941.9010541018 460280.2921176732 467201.1379209437 1.2446679151453812 1.1439239861507144 1.1682753796493626 1.0661631255505546 0.9956508724613903 1.074670785888433 1.0719537660783487 1.1642563703390285 0.985186581877629 1.0 18.833684262505134 4.104650247930466 1.4860864190394478 1.064129863670951 1.2206049441086875 0.5521198570569754 0.05501030778871134 0.41923940799052745 1.6528611575364753 0.016645480825829055 0.06870432155433308 12724.778986742424 -4.104650247930466 0.1564750804377364 DRT(ph)PPHLLYSDRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRTPPHLLYSDRDR 14 2 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR 151.96 0.00032385 4646480000.0 1141050.0 1359000.0 1243280.0 1245870.0 1103720.0 1209620.0 1337410.0 1226370.0 1595360.0 1252480.0 True False 1134906.7135825728 1404233.4934671512 1418323.017216515 1403597.0142580704 1244272.1997390243 1126001.8165392003 1272714.3688976567 1317887.9567806772 1202204.9047287616 1172545.6540979245 0.9678998080937765 1.1975938749672577 1.2096100584737357 1.1970510566924584 1.061171644268539 0.9603053088840862 1.085428413341223 1.1239544935199721 1.0252947512339339 1.0 20.16121266576069 3.166420557466415 8.05713737582413 1.0526031866073502 1.1515280729396808 0.2814235923566305 0.07715822291755021 0.35018218811416674 34.39002957518118 0.023029495422468238 0.02761556378921831 1466.9677199430143 -3.166420557466415 0.09892488633233065 DRT(ph)PPLLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRTPPLLYR 9 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR 114.24 0.0027005 9797800000.0 1017540.0 1082070.0 940670.0 921220.0 859130.0 1061030.0 1121450.0 882470.0 1432000.0 1093810.0 True False 1012061.6776993226 1118086.0458248714 1073108.1595497874 1037846.3575451854 968535.1130375353 987683.493495963 1067201.1791449718 948324.3924918632 1079102.7878169096 1024002.1093421441 0.9883394462434335 1.0918786549601642 1.0479550283731258 1.0135197457863983 0.9458331229998708 0.9645326747720144 1.0421865047041556 0.9260961318733035 1.0538091454813157 1.0 19.965787256472943 3.5248460265943216 4.30205786056387 0.9832816144989991 1.0464921220104664 0.22479095990310327 0.04388115745675039 0.2613534855833189 10.302016783033585 0.011449934457585133 0.017561004018476704 3348.467026094142 -3.5248460265943216 0.06321050751146728 DRTDIQCLIPCAIDQDPYFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRTDIQCLIPCAIDQDPYFR 20 1 P23381;P23381-2;H0YJP3 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS 0 ; 139.26 3.0543e-07 627090000.0 469520.0 543630.0 494920.0 562140.0 550860.0 574270.0 510400.0 569810.0 791010.0 602640.0 False True 466992.1564885765 561724.3959187248 564600.4340782434 633306.8663624874 621008.7557969774 534572.0665861721 485710.00208265486 612332.1156365516 596076.1844909593 564178.9992539379 0.8277375746103988 0.9956492472451847 1.000746987790866 1.1225282529125744 1.1007300105430908 0.9475220936849519 0.8609147145231403 1.0853507777607652 1.0565373494568244 1.0 19.10579343912654 4.783456303145037 2.532489413358288 1.0229864228597327 0.7719805231739707 0.3830003324206328 0.07344798486216403 0.6936009942323185 5.0921662099680685 0.019506922476049425 0.3912493232900816 60737.41483976867 -4.783456303145037 -0.25100589968576204 DRTQQYDDLIDEFMK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRTQQYDDLIDEFMK 15 1 A0A1W2PQ37;A0A1W2PQF8;A0A1W2PR68;A0A1W2PQT3;A0A1W2PPH1;A0A1W2PQH3;A0A1W2PQY8;P23368-2;P23368 A0A1W2PQ37 ME2 NAD-dependent malic enzyme, mitochondrial 0 ; 134.44 3.2029e-05 64882000.0 139513.0 128337.0 138834.0 104683.0 140065.0 232862.0 146000.0 128278.0 205444.0 164878.0 False True 138761.8775093516 132608.61946364513 158380.6204332394 117935.85706661017 157901.44751970284 216764.79803818665 138937.42222583795 137850.7557424855 154815.07900855938 154355.34488084237 0.8989768227104253 0.8591125857417826 1.0260779797130086 0.7640542487054988 1.0229736303695731 1.4043232400246488 0.9001140992758845 0.8930740678199519 1.002978414048907 1.0 17.235895914627157 4.242305010321301 24.976577743296726 0.9938331515605011 0.8790446723688047 0.08842521682286941 0.1558978076958228 260.84765420189956 1739882.7864424621 0.04039504650208206 0.10217027831138153 17470.486958083795 -4.242305010321301 -0.11478847919169644 DRVDCGYPHVTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 DRVDCGYPHVTPK 13 1 X6R3S7;Q07654 X6R3S7 TFF3 Trefoil factor 3 0 ;;; 112.72 0.00052771 2268910000.0 1245050.0 1211850.0 1134360.0 952010.0 981790.0 1438060.0 1367990.0 1102750.0 1408610.0 1244350.0 False True 1238346.789138059 1252185.6946712048 1294068.0279661275 1072534.368388215 1106815.1369747552 1338650.2970291164 1301815.0974707128 1185042.8046510364 1061476.9399069662 1164934.5176583657 1.0630183674420253 1.074897924038016 1.1108504455403494 0.9206821088485866 0.9501093153283532 1.1491206387462334 1.1175006644042884 1.017261302406156 0.9111902204088179 1.0 20.15181743089501 7.99999999992645 0.07679682435470336 0.9446822922301332 1.2668800176378623 0.07581172306951123 0.07749344976584988 716.7054590009747 4.025893632858763 2.666561404245431 24.62218106273243 99999999.98306447 -7.99999999992645 0.32219772540772906 DRVEISPEQLSAASTEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 DRVEISPEQLSAASTEAER 19 1 X6RJS7;P46736-2;P46736-3;P46736;A0A0A0MS96;P46736-5 X6RJS7 BRCC3 Lys-63-specific deubiquitinase BRCC36 0 109.85 0.00022555 147410000.0 70417.0 104110.0 102670.0 107860.0 101630.0 89126.0 101570.0 71957.0 111900.0 139310.0 False True 70037.88269606422 107575.238414176 117125.04357636234 121515.064940865 114571.97809179599 82964.92940003698 96656.6710649203 77326.79673024235 84323.74438317888 130419.11653070836 0.5370216005072628 0.8248425635427951 0.8980665311345227 0.9317274044886908 0.8784906778970473 0.6361408634485125 0.7411234919856371 0.5929099873332991 0.6465596963565085 1.0 16.992795826388445 2.7392191236503876 24.999440259201304 0.6913423506370427 0.8258379359992499 0.06412915953231724 0.14666528648016955 109.92834738638659 4173363.981959711 0.04523959200765143 0.04542044579655581 548.5536683296361 -2.7392191236503876 0.13449558536220718 DRVGVGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRVGVGIR 8 1 P33992;B1AHB1;B1AHB2 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 87.30799999999998 0.01406 72950000.0 35395.0 44248.0 36154.0 41775.0 38888.0 41279.0 44884.0 45170.0 58570.0 50673.0 False True 35204.4372527542 45720.767931519185 41244.16894379856 47063.71071671276 43840.156292765554 38425.479890313974 42712.789446469265 48540.81476861247 44136.20829779078 47439.005756662074 0.7420989687965853 0.9637800624668111 0.8694146996958606 0.9920888932227124 0.9241373336878773 0.8099975806284201 0.9003727790073027 1.0232258032051118 0.930378021077993 1.0 15.533786153241035 4.744219468354218 24.335992324534196 0.9336602281295053 0.7420988475340697 0.47204497456699046 0.06113389037618222 400.2645868979533 1721269.5727201698 0.015135582722783309 0.1325975137918296 55490.60608754186 -4.744219468354218 -0.1915613805954356 DRVHHEPQLSDK ddPTM_BT-474_Trastuzumab_2h_R1 4 DRVHHEPQLSDK 12 1 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-9;O43852-13;O43852-14;O43852-11;O43852-12;O43852-2;O43852-4;O43852-8;O43852-7 O43852;O43852-2 CALU Calumenin 0 ;;; 127.37 0.00016276 847100000.0 1293490.0 1392940.0 1200350.0 1177990.0 1132480.0 1472210.0 1497870.0 1002030.0 1950340.0 1322180.0 False True 1286525.9935602495 1439303.1658499897 1369348.8463707652 1327123.4132179641 1276694.6152651499 1370439.5879095707 1425412.305680931 1076806.5668052398 1469704.840217061 1237797.340424752 1.0393672304375579 1.1627938749295508 1.106278711102151 1.0721653455504756 1.0314245907387796 1.1071599066768896 1.151571633844195 0.8699376962918113 1.1873549830966106 1.0 20.239343696559985 DRVTDALNATR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRVTDALNATR 11 1 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ;; 124.45 0.00031814 682800000.0 805950.0 838930.0 740670.0 731750.0 798340.0 978260.0 809050.0 717720.0 1027530.0 882150.0 False True 801610.8547494625 866853.2779061067 844949.8979809514 824389.4749719825 900003.8668680941 910635.18877634 769913.1606288645 771279.9109083139 774308.9996965853 825850.4317533883 0.9706489503765687 1.0496492398334938 1.0231270282041416 0.9982309668612706 1.0897903933491546 1.1026635741328399 0.9322670680140451 0.9339220290419732 0.9375898709075278 1.0 19.655520995904336 2.2173650851831 24.997467289750457 0.9437339277725288 1.0392331006453863 0.5233809242773428 0.04094352389596781 180.35259951378626 212701.95406883146 0.015620554536656273 0.011547889222061816 164.95484847852168 -2.2173650851831 0.09549917287285747 DRVTSAVEALLSADSASR ddPTM_BT-474_Trastuzumab_2h_R1 5 DRVTSAVEALLSADSASR 18 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ;;;; 206.7 7.516e-16 1570029000.0 1040534.0 1298883.0 1174696.0 1175298.0 1214636.0 1337643.0 1324840.0 1073615.0 1552197.0 1363260.0 False True 1034931.8805581962 1342115.535463645 1340082.9861593284 1324090.6062939824 1369312.6948883852 1245174.8878829242 1260752.4278197198 1153733.603006506 1169678.8477241932 1276255.5796543937 0.8109127176850054 1.0516040492665943 1.0500114612797375 1.03748075808808 1.0729141691660153 0.9756469689402759 0.9878526275756834 0.9039988709149729 0.9164926417332012 1.0 20.28348583775115 2.018585530806435 2.692157644063554 0.9314989777277253 1.0098528678148557 0.09934240146757944 0.07402525190022792 0.4875362255518633 6.777114216620714 0.036476415401582356 0.021133490127159833 104.37236654732096 -2.018585530806435 0.07835389008713045 DRYDS(ph)DRYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRYDSDRYR 9 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 DRYDS(1)DRYR 74.392 0.032462 230840000.0 139740.0 117950.0 100890.0 109130.0 81872.0 105990.0 113480.0 87812.0 180920.0 115220.0 True False 138987.65536657348 121875.89444771921 115094.43504839958 122945.84681064897 92297.91390663701 98663.16077362296 107990.53886430194 94364.97734030096 136334.69020379547 107866.5609551952 1.2885147550435498 1.1298765193630593 1.0670075510816244 1.1397957413485844 0.855667531154303 0.9146779122271723 1.0011493636953739 0.8748306843628544 1.263919874672051 1.0 16.718888167613116 4.670524389420408 0.8734788485707942 0.9793380043301111 1.4248563453165421 0.36247658520108805 0.1154047197483865 2.0781693839182127 1.3260113147741197 0.0383887199171985 0.8722847088172306 46830.02497758148 -4.670524389420408 0.44551834098643106 DRYDSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DRYDSDR 7 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;;; 130.75 0.0032223 335854000.0 535424.0 580281.0 550589.0 537832.0 477809.0 517591.0 563773.0 531683.0 678665.0 582149.0 False True 532541.3366751991 599595.3022977277 628107.1453946203 605921.4760548426 538655.1439541765 481811.15244815755 536501.146167995 571359.8852915695 511417.10439508606 544995.7524171665 0.9771476829191246 1.1001834411339926 1.1524991573032228 1.1117911898715873 0.9883657653571277 0.8840640506118214 0.9844134450378811 1.0483749327540128 0.9383873216017697 1.0 19.055885460306982 3.2022740738890283 7.556719927675044 0.9774827541216363 1.0912379481888657 0.4715533895802274 0.05762465012892197 0.19287520740287795 32.53253911175252 0.017732287442700903 0.02148836405979825 1593.2138527919524 -3.2022740738890283 0.11375519406722934 DRYDSDRYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRYDSDRYR 9 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ; 160.75 3.6589e-05 236550000.0 104321.0 129766.0 144290.0 145185.0 105790.0 94651.0 120088.0 102174.0 221760.0 128592.0 False True 103759.34732715283 134085.18286479657 164604.77780883716 163565.40611384663 119261.72943354418 88107.99915448808 114278.88465929052 109798.74270905933 167110.21943175828 120385.14846685006 0.8618949151832013 1.1138016987346162 1.3673179782152585 1.3586842579580065 0.9906681260303863 0.7318842920125649 0.949277266462474 0.9120621946094466 1.3881298611994044 1.0 16.87729789681006 3.0953143220111765 10.109861786971617 0.968606774777471 1.1844194229330085 0.15254687519122756 0.20234472685848207 0.560023711659869 54.82361168216588 0.06045582159139836 0.07230297783638269 1245.4156592045335 -3.0953143220111765 0.21581264815553747 DRYDSFIELQEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DRYDSFIELQEK 12 1 Q9NSD9;Q9NSD9-2 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit 0 ;; 261.98 1.9784000000000003e-21 1983790000.0 1759750.0 1803750.0 1769400.0 1637040.0 1686000.0 2002360.0 1917090.0 1785000.0 2456670.0 2010090.0 False True 1750275.7015266037 1863786.7283601006 2018516.140099497 1844289.0961505082 1900702.1062950694 1863941.5662484332 1824353.0327050092 1918205.7640463412 1851256.596191456 1881804.3352753678 0.9301050426533759 0.9904253558260452 1.0726493197307487 0.9800642189936447 1.0100423676709918 0.9905076374349405 0.9694700976645632 1.0193438967530313 0.983766782490996 1.0 20.843685197814125 4.707091137535727 4.58394043074566 1.0035233421049572 0.9271822312172971 0.38912420623566824 0.02721612860856237 0.167439016875179 8.372170934445688 0.006360323419843896 0.03745897692521857 50943.77663397933 -4.707091137535727 -0.07634111088766005 DRYGVFPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DRYGVFPLR 9 1 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 ; 159.34 6.031100000000001e-05 1315250000.0 388040.0 745020.0 703580.0 648190.0 666400.0 697230.0 714340.0 649490.0 867930.0 661220.0 False True 385950.83575529716 769817.5403259003 802637.9483730106 730250.7875395826 751262.0899377442 649032.1312028782 679784.6451561986 697958.2418433938 654040.2811661521 619020.3735010778 0.6234864832839386 1.243606144935002 1.296626060679428 1.1796878080270667 1.2136306365632668 1.048482665492993 1.0981619899058381 1.1275206305341072 1.0565731099721443 1.0 19.239627367342056 1.0228617599970191 3.022315673248957 1.00026255645704 1.1194040303746446 0.027302119748318754 0.17633087902113406 0.8279136010880571 17.279975058378323 0.16128762838346816 0.04256734387870368 10.540513285724305 -1.0228617599970191 0.11914147391760466 DRYLPDTLLLEECGLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DRYLPDTLLLEECGLLR 17 1 P21964-2;P21964;E7EMS6 P21964-2 COMT Catechol O-methyltransferase 0 ;; 269.33 2.7614e-28 254673000.0 157382.0 198961.0 188077.0 202509.0 191741.0 211575.0 201383.0 181331.0 256108.0 210211.0 False True 156534.67279878387 205583.29661053576 214556.60680541018 228146.6186362846 216158.07981205435 196949.31824397814 191641.33493223248 194862.8400001609 192993.61507137766 196795.15400930846 0.7954193465118543 1.0446562957582362 1.0902535069296553 1.1593101455409476 1.0983912734041714 1.0007833741407188 0.973811250063443 0.9901810894741029 0.9806827614375556 1.0 17.586335169845587 -0.3917491378422816 7.793493021403124 1.0000044461252646 1.0202786478985617 0.0 0.09300364383169425 0.0 0.0 0.09211405005931873 0.021711489813167135 0.4057428376013202 0.3917491378422816 0.020274201773297085 DRYSAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DRYSAGK 7 1 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 110.41 0.006211 2603400000.0 1867500.0 1833810.0 1644980.0 1589580.0 1723300.0 1387840.0 1996280.0 1854640.0 2493320.0 1997640.0 False True 1857445.5874987552 1894847.2572884453 1876578.8855775225 1790820.6650166903 1942752.0402006486 1291901.8874239542 1899712.3098698359 1993042.6544710973 1878874.694776295 1870148.90493435 0.9932073230093725 1.0132066234345989 1.00343821854303 0.9575818590122136 1.0388221146854866 0.6908016169275598 1.0158080486839756 1.0657133499971552 1.004665826244596 1.0 20.834721714227328 2.022933541421051 24.9999760630354 1.0332613289797614 0.9504513695610426 0.12323863688107195 0.09318222930444962 450.23689902109885 490803.802022623 0.03549407070231335 0.026212660215782408 105.42255595645867 -2.022933541421051 -0.08280995941871883 DRYVEVFQCSAEEMNFVLMGGTLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DRYVEVFQCSAEEMNFVLMGGTLNR 25 1 Q6NXG1;Q6NXG1-2;Q6NXG1-4;Q6NXG1-3;A0A2U3TZN9;Q6NXG1-5;H0YBR2;H0YBB3 Q6NXG1 ESRP1 Epithelial splicing regulatory protein 1 0 119.33 0.00047891 13190000.0 4867.4 5403.1 4673.9 4763.2 4284.5 5118.8 3268.9 4289.7 5462.4 4403.6 False True 4841.194459218977 5582.938917257078 5331.944493732926 5366.220631618104 4830.1056787789075 4764.949404359097 3110.770818589326 4609.819196655231 4116.264712409978 4122.558477888364 1.1743179593897983 1.3542412914702286 1.293358122712192 1.3016724105674207 1.1716281781533295 1.1558233630684058 0.7545728787776249 1.1181937676276335 0.9984733350631305 1.0 12.009324242887882 2.680145534665946 2.2538416948206947 0.9855293924647314 1.2793655505414425 0.6319776213522563 0.10260070735854934 0.19247191532501134 1.9281944784641705 0.03599841916785996 0.034383840497546676 478.79051099266024 -2.680145534665946 0.29383615807671115 DS(ph)DGVDGFEAEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSDGVDGFEAEGK 13 0 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 DS(1)DGVDGFEAEGK;DS(1)DGVDGFEAEGK 322.02 4.1251999999999996e-51 925450000.0 1616310.0 1113780.0 955430.0 857120.0 900420.0 1352760.0 1224790.0 1293690.0 2010290.0 1195950.0 True False 1607607.9665489246 1150851.4940057723 1089946.2392535668 965631.3041175075 1015083.1497925315 1259246.8852545165 1165542.2285478362 1390231.7170247121 1514880.966005906 1119623.4470956912 1.4358469990237053 1.0278915621060696 0.9734935813294129 0.8624607734165982 0.9066290567830303 1.1247057111219037 1.0410127008069172 1.2416957867673994 1.353027189574776 1.0 20.09458217450812 1.7521108948887447 6.289495162795219 1.2218186061117267 1.038534329736557 0.12550583948086558 0.1688171207288659 0.2616412641640582 28.180442852507188 0.08357459306967772 0.04441090560075945 56.50812470164521 -1.7521108948887447 -0.18328427637516964 DS(ph)DGVDGFEAEGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSDGVDGFEAEGKK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 DS(1)DGVDGFEAEGKK 126.63 5.1613e-05 258450000.0 189620.0 147980.0 124930.0 116310.0 117980.0 178580.0 187240.0 172300.0 310700.0 168780.0 True False 188599.10698876236 152905.42484420098 142519.05808897383 131034.83407446719 133004.05367775363 166235.18493210277 178182.48587373883 185157.9009216718 234132.14816669963 158008.31590017222 1.193602412090241 0.9677049209283695 0.9019718821572383 0.8292907454140163 0.84175350468126 1.0520660509863808 1.127677900106931 1.171823773114906 1.4817710500415784 1.0 17.269640963169742 2.1552356651489957 1.8195339808096433 1.2343963082639935 0.9412538726883866 0.39455307658759964 0.14572245689746668 0.3400267571156239 2.2003414501498275 0.0790352154762679 0.04612437023044502 142.96695425962602 -2.1552356651489957 -0.29314243557560693 DS(ph)ESPSQKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSESPSQKK 9 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 DS(0.547)ES(0.445)PS(0.008)QKK 54.471 0.082583 244740000.0 264630.0 154200.0 132490.0 144290.0 148590.0 170470.0 182060.0 193790.0 352100.0 254940.0 True False 263205.2614831572 159332.4537841317 151143.44037627577 162557.09920561305 167512.05573806912 158685.8101432163 173253.06226326077 208251.59384568065 265329.67289827776 238669.51093488495 1.1028021989577306 0.6675861242603442 0.6332750244647357 0.6810970474145008 0.7018577910597497 0.6648767558186759 0.725912001011845 0.8725521455587049 1.1117032580280704 1.0 17.864654754168328 1.4865127727009806 3.0043517221360307 1.0528182782698818 0.7267237011284464 0.480505401483063 0.12980605022955882 0.1910979405050224 3.4501923676086226 0.09474233911986518 0.03353621038234773 30.655808375401943 -1.4865127727009806 -0.3260945771414354 DS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSFDDRGPSLNPVLDYDHGSR 21 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 DS(1)FDDRGPSLNPVLDYDHGSR;DS(1)FDDRGPSLNPVLDYDHGSR 185.18 2.227e-17 162478000.0 167838.0 206400.0 225160.0 246060.0 235140.0 263830.0 226590.0 209137.0 293370.0 249340.0 True False 166934.378856555 213269.89922856502 256860.57087419604 277211.1707708998 265083.685216028 245592.05308901728 215628.9760421412 224743.8649161678 221072.8944565968 233426.90772928644 0.7151462549045751 0.9136474509438379 1.1003897253014483 1.1875716191742194 1.1356175163981312 1.0521154372393058 0.9237537271933272 0.9628018770518578 0.9470754533276985 1.0 17.83261134829311 4.594879070908308 3.020431309653171 1.0359650448673658 0.706039328177927 0.600503310728951 0.08108660642237571 0.23493526942199336 3.499113356955648 0.02353998266357305 0.1529392512427562 39344.050688002695 -4.594879070908308 -0.3299257166894388 DS(ph)IARQVAPES(ph)HWPELRVLILVVS(ph)AEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSIARQVAPESHWPELRVLILVVSAEK 27 2 P53602;H3BP35 P53602 MVD Diphosphomevalonate decarboxylase 3 DS(1)IARQVAPES(1)HWPELRVLILVVS(1)AEK 47.52 0.093086 119770000.0 17252.0 53815.0 52381.0 66747.0 60429.0 36028.0 32714.0 28364.0 14581.0 31891.0 True False 17159.117148877398 55606.19974314551 59755.78949618613 75197.16335627582 68124.27495925552 33537.46916078956 31131.498840383978 30480.66570947363 10987.70792538991 29855.689076741262 0.5747352574838078 1.8624992911808187 2.0014875336686906 2.5186879178366484 2.281785383822441 1.1233192131182979 1.0427325512522376 1.0209332509836206 0.368027276046017 1.0 14.865718246408457 2.5825914239322088 4.833210844643019 0.9036133251679861 1.8913122737133636 0.45844224346094764 0.5127306135382143 0.2166979702378834 7.945781669153604 0.17726853357410116 0.16534220853173207 382.46475836964026 -2.5825914239322088 0.9876989485453775 DS(ph)LGTYSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DSLGTYSSR 9 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 DS(1)LGTYSSR;DS(1)LGTYSSR;DS(0.999)LGT(0.001)YSSR;DS(1)LGTYSSR 236.95 3.1952999999999993e-10 2661680000.0 1402300.0 1311700.0 1235500.0 1259500.0 1364440.0 1828740.0 1812290.0 1507430.0 1947720.0 1661940.0 True False 1394750.1726101756 1355359.1415606055 1409447.6608414873 1418952.5708605545 1538193.346330514 1702323.5081909166 1724622.6090798895 1619922.08117444 1467730.5041108592 1555873.5663415808 0.8964418464218372 0.8711242165695655 0.9058883005227774 0.9119973509139454 0.9886364673881314 1.094127148257742 1.1084593545316785 1.0411656295334204 0.9433481844942082 1.0 20.569293397885346 3.1445479501912614 2.793065192521879 1.0458890942657886 0.89222174135877 0.6879287778769079 0.044651603382571584 0.14785678057583404 2.336995684132147 0.014332464684126078 0.018038529361879503 1394.915660933175 -3.1445479501912614 -0.1536673529070186 DS(ph)LSPVLHPSDLILTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 DS(0.595)LS(0.405)PVLHPSDLILTR;DS(0.587)LS(0.413)PVLHPSDLILTR;DS(0.579)LS(0.421)PVLHPSDLILTR 146.1 7.448899999999998e-07 189240000.0 179268.0 274769.0 271172.0 286041.0 273968.0 309348.0 278843.0 246936.0 313095.0 297710.0 True False 178302.8410065474 283914.5200636322 309350.66053072293 322253.7612715559 308856.2008644415 287963.5008868637 265354.29880629666 265363.6182356008 235936.93250805524 278709.89291764563 0.6397434950729685 1.0186739949971007 1.10993785434854 1.1562336661181123 1.1081637527509784 1.0332015769958778 0.9520806600313418 0.9521140977726671 0.8465323208953005 1.0 18.088404686817253 -0.7882648816666671 7.365364453602846 0.999981012941911 0.9912406045123021 0.0 0.14319608048041688 0.0 0.0 0.14010919895617585 0.0330240548961757 0.16283026074796825 0.7882648816666671 -0.008740408429608881 DS(ph)PGIPPSANAHQLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPGIPPSANAHQLFR 16 0 B4DG22;B1AXG1;B7ZB17;P51812 B4DG22 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 DS(1)PGIPPSANAHQLFR 96.012 0.0022915 287410000.0 237990.0 244220.0 229580.0 223210.0 224980.0 265350.0 258160.0 219090.0 283740.0 271520.0 True False 236708.68828317453 252348.7150658925 261902.86845486762 251468.36311376284 253629.86943906615 247006.97906671226 245671.81453302954 235439.60831647794 213816.0789212082 254191.36114003256 0.9312223956846947 0.9927509492617062 1.0303374091088282 0.9892876059435803 0.9977910669408742 0.971736324786575 0.9664837287593355 0.926229779251922 0.8411618631028854 1.0 17.955555474676547 1.8340258297244318 2.3714527003748764 0.9117929736540056 0.9882285192324455 0.2969316287130862 0.04271854477085547 0.2994370033903379 3.1571449667779636 0.024569404383295943 0.011669492626787015 68.23792775368014 -1.8340258297244318 0.0764355455784399 DS(ph)PLAQLADSCEGPGLGALDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSPLAQLADSCEGPGLGALDR 21 0 Q9ULE0;Q9ULE0-2 Q9ULE0 WWC3 Protein WWC3 1 DS(1)PLAQLADSCEGPGLGALDR;DS(1)PLAQLADSCEGPGLGALDR 240.13 6.2564999999999986e-30 187068000.0 244829.0 232542.0 198526.0 195960.0 208734.0 241549.0 234147.0 232202.0 270321.0 245688.0 True False 243510.86786705875 240282.01989539256 226476.73518107407 220768.51590776848 235315.0376366523 224851.28617518506 222820.41508159763 249530.09233786477 203704.0116658206 230007.9814959205 1.0587061643831597 1.0446681820893866 0.9846472879250537 0.9598298044786941 1.0230733564383978 0.9775803635717445 0.968750795656844 1.0848757974178844 0.8856388823595391 1.0 17.81132439936643 4.304218281758808 5.16578409125318 0.9926362965642826 1.054434303953578 0.22458084361688113 0.0478843487493133 0.3091846534146269 15.559396323212281 0.011521227655296326 0.03260810360423496 20147.36626882584 -4.304218281758808 0.061798007389295306 DS(ph)PPLLDAPASPPQASR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPPLLDAPASPPQASR 17 0 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 DS(1)PPLLDAPASPPQASR 87.148 0.0040055 0.0 38852.0 34882.0 27885.0 35089.0 27981.0 33849.0 34209.0 33927.0 46466.0 32296.0 True False 38642.82514886301 36043.0262833857 31810.965619235016 39531.263802243775 31544.214493619467 31509.098301975315 32554.179978929373 36458.805017815226 35015.07691250037 30234.841630003302 1.2780892197733926 1.1921023673435978 1.0521293945746242 1.307473817326539 1.0433067544933596 1.0421453066487212 1.0767107821270838 1.2058540098862507 1.158103533036318 1.0 14.883924401727032 7.999986576987355 0.7614343511197487 1.1163579657874638 32.84823243719054 0.2563656091330695 0.08817542753829105 607.5680257570267 2.475761696948696 0.03044151323165114 33119.12313852149 99996909.28488155 -7.999986576987355 31.731874471403074 DS(ph)PRPGKPDER ddPTM_BT-474_Trastuzumab_2h_R1 2 DSPRPGKPDER 11 2 A0A0A0MR03;Q9Y5B0;K7EJD2;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 A0A0A0MR03 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 DS(1)PRPGKPDER;DS(1)PRPGKPDER 98.592 0.004257100000000001 869170000.0 853330.0 676760.0 596760.0 554280.0 614120.0 858960.0 759100.0 768390.0 1134310.0 823720.0 True False 848735.7660938754 699285.5474899409 680778.6208690943 624451.791168391 692324.5418255815 799582.1169743482 722379.4329563938 825731.1636053596 854774.499475278 771149.4843778278 1.100611208705722 0.90680933030012 0.8828101874675495 0.8097675013972236 0.8977825387306804 1.0368704553040844 0.9367566828359066 1.0707796352500565 1.1084420294528494 1.0 19.556651022601457 2.13871901374034 1.3440572307517817 1.0628288943566853 0.9166485179379364 0.3025728242475505 0.08143496522964086 0.5085574677540199 1.7475847468647232 0.054424180718202 0.028752419209074075 137.6318709755807 -2.13871901374034 -0.14618037641874881 DS(ph)PSAVFEQDLENK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPSAVFEQDLENK 14 0 Q8NB14-2;Q8NB14 Q8NB14-2 USP38 Ubiquitin carboxyl-terminal hydrolase 38 1 DS(0.999)PS(0.001)AVFEQDLENK 94.728 0.0036417 0.0 39100.0 27648.0 26309.0 20364.0 22683.0 33301.0 32091.0 26212.0 37106.0 32833.0 True False 38889.489944418376 28568.246966431056 30013.078518072605 22942.08031203203 25571.545597325687 30998.980252122063 30538.635730475096 28168.07254183905 27961.723494926144 30737.5698302545 1.265210299941802 0.9294243859939697 0.9764297790559621 0.7463856264085819 0.831931272984243 1.0085045897678697 0.9935279821769255 0.9164053208303301 0.9096920690003237 1.0 14.90771548691932 4.741641810396293 5.162215515877805 0.9191228977355961 1.2813600054905052 0.6327797183728008 0.0780403224606358 0.1097976182754969 9.767515253533036 0.01957648180975562 0.1415452916513729 55162.229448349164 -4.741641810396293 0.36223710775490914 DS(ph)PTREPGALPCACGQLPDLEDELSLLDPLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPTREPGALPCACGQLPDLEDELSLLDPLPR 32 1 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 DS(0.988)PT(0.012)REPGALPCACGQLPDLEDELSLLDPLPR 206.41 2.6960999999999998e-27 38446000.0 11644.0 8516.3 9136.0 8054.8 10022.0 11215.0 11464.0 12486.0 13618.0 11104.0 True False 11581.309997770013 8799.75989728794 10422.269388464458 9074.536854122747 11298.242294952073 10439.733447270319 10909.44252326717 13417.768722623312 10262.02637185103 10395.333213387314 1.1140874236580869 0.8465106136237593 1.0025911795730083 0.8729433359996946 1.086857156286436 1.004271169857819 1.0494557797548785 1.2907492667328495 0.9871762800864711 1.0 13.343648382824783 2.5234412098803363 1.475222203829127 1.12401540745187 0.9636718214784274 0.1170995414206959 0.11155430148279757 0.5309297834867035 2.340387484868009 0.051672612797295424 0.0407879500799407 333.76532054558356 -2.5234412098803363 -0.16034358597344256 DS(ph)QDAS(ph)AEQSDHDDEVASLASASGGFGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 2 DS(1)QDAS(0.906)AEQS(0.095)DHDDEVASLASASGGFGTK 165.97 2.3844e-12 82420000.0 135990.0 92419.0 79818.0 96515.0 116600.0 130670.0 99784.0 97021.0 169060.0 111450.0 True False 135257.84494990922 95495.11054653469 91055.68060950704 108733.78910409406 131448.31885765435 121637.09046409381 94957.06670810288 104261.19968265554 127397.42828793767 104337.16558285448 1.2963534536741899 0.9152549814160106 0.872706097590886 1.042138613759334 1.2598417651404457 1.1658078862368693 0.9100982011313808 0.9992719190733755 1.2210167640290264 1.0 16.670893621281 4.758216606193722 23.51302622479293 1.0400655986132565 1.2963539916760236 0.264441543278798 0.12673125790089287 2933.1316290962154 3508562.9785617157 0.03208804258638833 1.1253307211973687 57308.17866628509 -4.758216606193722 0.2562883930627671 DS(ph)QDGSSYR ddPTM_BT-474_Trastuzumab_2h_R1 12 DSQDGSSYR 9 0 Q14847;Q14847-2;C9J9W2;Q14847-3;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 1 DS(0.941)QDGS(0.057)S(0.002)YR;DS(0.976)QDGS(0.024)S(0.001)YR;DS(1)QDGSSYR;DS(0.999)QDGS(0.001)SYR;DS(0.982)QDGS(0.018)SYR;DS(1)QDGSSYR;DS(0.997)QDGS(0.003)SYR;DS(0.939)QDGS(0.061)SYR;DS(0.997)QDGS(0.001)S(0.002)YR;DS(1)QDGSSYR;DS(0.921)QDGS(0.073)S(0.006)YR;DS(1)QDGSSYR 183.4 4.7423e-05 19189470000.0 9226071.0 8105246.0 7619275.0 7585197.0 7338027.0 8158987.0 9149793.0 8605090.0 10929669.0 9643222.0 True False 9176398.858848846 8375024.213385319 8692002.69207448 8545482.162472233 8272481.242556411 7594975.432879505 8707182.556986412 9247245.511561634 8236198.525011204 9027783.315982293 1.0164620192648457 0.9276944206844924 0.9628058613997341 0.946575905000265 0.9163358216530588 0.8412890703118423 0.9644873223276962 1.0243096436741914 0.9123168154058693 1.0 23.105940360836936 -1.4070173788754528 5.975056035399913 1.0000148023342297 0.9483065780803491 0.09346157245449804 0.05009158747593428 1.040513915116701e-05 1.0326516703479945e-06 0.051092733808973737 0.01203922587639035 0.0391726201345458 1.4070173788754528 -0.05170822425388055 DS(ph)QNKTLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSQNKTLLK 9 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 1 DS(0.5)QNKT(0.5)LLK;DS(0.5)QNKT(0.5)LLK 59.153 0.063072 461620000.0 997820.0 789320.0 754860.0 725780.0 637290.0 1068150.0 1011070.0 890990.0 1297040.0 1192540.0 True False 992447.8479882241 815592.0390459831 861137.7266392603 817663.6735840995 718445.1039862316 994311.304654639 962160.6814375207 957480.1981555463 977401.8714455615 1116431.076215139 0.8889468137636981 0.7305350562355868 0.7713308461088708 0.7323906428295568 0.6435194427065425 0.8906159330726412 0.8618182545575344 0.8576258925016144 0.8754699616201063 1.0 20.090462757276377 2.702837784440694 24.732158325177743 0.8829657131220643 0.7519124842784981 0.5206300393287757 0.06829618796606865 451.8868164531122 312856.5008484059 0.021510221949012427 0.020280818892866377 504.4728341331763 -2.702837784440694 -0.13105322884356618 DS(ph)RPLSPILHIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSRPLSPILHIVK 13 1 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 DS(0.68)RPLS(0.32)PILHIVK;DS(0.705)RPLS(0.295)PILHIVK 132.47 7.1728e-05 723480000.0 1100490.0 1056620.0 897380.0 859920.0 857820.0 1087250.0 1014580.0 1056070.0 1436200.0 1072480.0 True False 1094565.0841159339 1091788.957959723 1023723.303833213 968785.7838304152 967058.2923025127 1012090.9666112033 965500.8893280184 1134879.3060148007 1082267.7540940251 1004033.4082036769 1.0901679915952476 1.087403017707399 1.0196107972789108 0.9648939725657899 0.9631734207257937 1.0080251895421908 0.9616222741585887 1.1303202629932614 1.077920062471146 1.0 19.93737584364064 -0.17571335656511264 7.0496476549322145 0.9999999928064645 1.0339097620555053 0.029888228949902618 0.05755446952082661 0.0 0.0 0.0610455728412477 0.0143885795058212 0.6672470208893536 0.17571335656511264 0.03390976924904088 DS(ph)SFER ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSFER 6 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 DS(0.606)S(0.394)FER 73.248 0.087547 149350000.0 172000.0 175070.0 159550.0 160170.0 154140.0 152280.0 172120.0 153910.0 205600.0 171630.0 True False 171073.97111099647 180897.09911795033 182013.25316653936 180447.50557739986 173768.81534064186 141753.24202856218 163793.89803774827 165395.54573914417 154932.63489885232 160676.42646016437 1.0647110772868098 1.1258471644115084 1.1327937593363449 1.123049034340686 1.0814829478655565 0.882227997917954 1.0194021714713501 1.0293703275766455 0.9642524314994267 1.0 17.293798754888954 2.9794705630817293 23.327368543279313 0.9875999142174217 1.1126485266926194 0.6971043163123214 0.04188611090966354 189.71494641134734 215571.29733937935 0.012937148440192676 0.013895782269804658 953.8290891521625 -2.9794705630817293 0.12504861247519772 DS(ph)SQEYTDSTGIDLHEFLVNTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;Q15032-2;Q15032-4;Q15032;Q15032-3;H7C2F9 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 DS(0.218)S(0.218)QEY(0.195)T(0.218)DS(0.075)T(0.075)GIDLHEFLVNTLK;DS(0.497)S(0.497)QEYT(0.005)DSTGIDLHEFLVNTLK;DS(0.494)S(0.494)QEY(0.001)T(0.011)DSTGIDLHEFLVNTLK;DS(0.541)S(0.457)QEYT(0.002)DSTGIDLHEFLVNTLK 182.97 2.4375e-17 729252000.0 188877.0 164351.0 137848.0 142230.0 138480.0 169781.0 169589.0 161395.0 229011.0 200628.0 True False 187860.10721820733 169821.32368272237 157255.80020370492 160236.30341682967 156114.60716473387 158044.43909148488 161385.33217710716 173439.11444720416 172574.30764018054 187823.74927372753 1.0001935747988226 0.9041525597235892 0.8372519492970295 0.8531205666824757 0.8311760774044505 0.8414507734118151 0.8592381570549421 0.9234141854683152 0.9188098326621997 1.0 17.51901996976694 1.0328962779490716 1.2489775136428096 0.9969072088409681 0.8723699270120737 0.37214113072184163 0.04808224465378605 0.4978283539184204 1.6012439881042293 0.04721818073128363 0.014643443570214151 10.786890693954899 -1.0328962779490716 -0.12453728182889434 DSAIPVES(ph)DT(ph)DDEGAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 2 DSAIPVES(1)DT(1)DDEGAPR;DSAIPVES(1)DT(1)DDEGAPR 334.96 2.0080999999999997e-71 458860000.0 293313.0 292112.0 258716.0 270309.0 283483.0 321230.0 286456.0 278850.0 373060.0 273640.0 True False 291733.83539813757 301834.77133456717 295140.9640002158 304530.0916845939 319582.8797146178 299024.12619408325 272599.0289118126 299659.20297160913 281124.36174788827 256176.06092500972 1.1388020970606487 1.178231760784717 1.1521020462821945 1.1887531199636128 1.247512662036634 1.1672602237475125 1.0641081291027046 1.16973928746343 1.0973873231276736 1.0 17.966776139818112 0.743886320562474 0.5894992346109773 0.9970357913842011 1.1777615264030012 0.6073501943239379 0.04172862288820698 0.83435928413336 0.6094267096416619 0.04896606824938519 0.01907329230240406 5.544805550279403 -0.743886320562474 0.18072573501880018 DSAIPVESDT(ph)DDEGAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 DSAIPVES(0.079)DT(0.921)DDEGAPR;DSAIPVES(0.43)DT(0.57)DDEGAPR 256.71 4.6712e-26 2162400000.0 588310.0 659870.0 623620.0 651190.0 653960.0 793470.0 685730.0 651310.0 846300.0 707620.0 True False 585142.6043273857 681833.3740501615 711420.2753977888 733630.5872319848 737237.9296754003 738619.2865274693 652558.6201570134 699914.0594851669 637740.7048390012 662459.0857760387 0.8832886692797329 1.0292460148711324 1.0739082468231143 1.1074353163600619 1.112880697849833 1.11496589357245 0.98505497798792 1.056539301087933 0.9626869319664004 1.0 19.337471829270573 1.44105389722794 1.731309298770303 0.9849215080422955 1.0540217351682823 0.09556947049084785 0.0683310880709442 0.7906488272038185 4.429549067906989 0.062358777347739966 0.019873339948872196 27.60920473345428 -1.44105389722794 0.06910022712598685 DSALAEAPEGLS(ph)PAPPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DSALAEAPEGLSPAPPAR 18 0 C9JPC9;Q9H9J4-2;Q9H9J4 C9JPC9 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR 347.12 2.957199999999999e-90 1686680000.0 1141910.0 1243580.0 1114860.0 1088540.0 1163860.0 1271530.0 1195620.0 1155010.0 1491600.0 1344930.0 True False 1135762.0834381294 1284971.8085400157 1271822.5974631666 1226349.0523894806 1312070.6722613177 1183632.1239596645 1137783.292888056 1241202.7112219406 1124015.1664159931 1259095.415947496 0.9020460793143659 1.0205515739830149 1.0101081946248633 0.9739921509178294 1.042074060188645 0.9400654699937544 0.9036513662722296 0.9857892384493429 0.892716431319979 1.0 20.263956185898387 2.664243134783974 24.998927036611555 0.9437008866191953 0.9917210681166835 0.19409910433000277 0.04606326987624298 207.56325577672027 69819.28334372141 0.014121442144071981 0.0133138250523508 461.57591021918057 -2.664243134783974 0.04802018149748821 DSAYISSS(ph)PLGSHQVFDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 DSAYISS(0.014)S(0.986)PLGSHQVFDFR;DSAYISS(0.047)S(0.953)PLGSHQVFDFR;DSAYIS(0.01)S(0.086)S(0.903)PLGSHQVFDFR 178.22 2.4768000000000002e-14 1937700000.0 954960.0 1104900.0 1047160.0 1114190.0 985250.0 1162070.0 1151150.0 988360.0 1244910.0 1093980.0 True False 949818.601466031 1141675.9285738447 1194591.0259221138 1255246.3397595242 1110715.7474657302 1081738.8361185386 1095464.476679955 1062116.4419903865 938118.6114393488 1024161.2597965999 0.9274111790311875 1.1147423490716526 1.1664091123299876 1.2256334905782496 1.0845125578039538 1.056219248454461 1.0696210837905702 1.0370597714283047 0.9159872065710245 1.0 19.966011462779257 1.6841122857144313 1.3563946657028536 0.9614546351639166 1.1072723156082005 0.3181903806104286 0.07608572854017603 0.48538385582786736 1.7108240147903204 0.06528367557960515 0.024451867368007182 48.31837117898337 -1.6841122857144313 0.1458176804442839 DSCPLDCK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSCPLDCK 8 0 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 128.61 0.0026201 482700000.0 804960.0 774720.0 683850.0 619100.0 659590.0 819520.0 773820.0 772060.0 1165200.0 835420.0 False True 800626.1847994634 800506.0868718695 780130.1358692452 697477.9965222462 743584.8768037754 762868.5113425738 736387.3703205335 829675.0376412433 878052.0728800729 782102.780360954 1.0236841050864958 1.0235305473564766 0.9974777682150696 0.8917983851180633 0.9507508418018896 0.975406980384978 0.9415480788607835 1.0608260940567604 1.1226811806944819 1.0 19.576998686794806 1.6499339445116625 5.751560515384744 1.0709214954323683 0.9714258696350957 0.4325118118916005 0.04644428552525398 0.12538590164322744 8.797381408976841 0.02550018120797566 0.012450265028675838 44.6615657465502 -1.6499339445116625 -0.09949562579727256 DSDAGS(ph)STPTTSTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSDAGSSTPTTSTR 14 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;K7EP28 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 1 DSDAGS(0.369)S(0.296)T(0.296)PT(0.031)T(0.006)STR;DSDAGS(0.612)S(0.248)T(0.14)PTTSTR;DSDAGS(0.398)S(0.3)T(0.3)PT(0.001)TSTR 113.76 0.00054233 132239000.0 294144.0 276802.0 257481.0 270533.0 269797.0 326015.0 323716.0 298578.0 391760.0 316111.0 True False 292560.36138647096 286015.1872396575 293732.0867350282 304782.4500616264 304154.04873789556 303478.35040676146 308056.6203647899 320859.40650836355 295215.9973150505 295936.52534375695 0.9885915942502729 0.9664747766684937 0.9925509748883883 1.0298912907340319 1.0277678579370804 1.025484603680617 1.040955049421339 1.084216982461548 0.9975652615780716 1.0 18.17492824356172 3.777369043834345 2.287913542297272 1.0374560086242537 0.9768006563365466 0.4328039054021757 0.023867214782756323 0.2501322510453069 2.553673176649188 0.00694875265216463 0.014286826787035103 5989.203143172336 -3.777369043834345 -0.06065535228770713 DSDAGSST(ph)PTTSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSDAGSSTPTTSTR 14 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;K7EP28 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 1 DSDAGS(0.004)S(0.139)T(0.857)PTTSTR;DSDAGS(0.062)S(0.212)T(0.725)PTTSTR 258.68 2.4255e-23 763860000.0 1474770.0 1505340.0 1338600.0 1427190.0 1366170.0 1562040.0 1550810.0 1451880.0 1887570.0 1554890.0 True False 1466830.0021823514 1555444.331902752 1527063.2446802217 1607872.1076669109 1540143.6515760026 1454059.8514466463 1475791.3956304905 1560226.6580972564 1422403.6656421549 1455655.5889916962 1.0076765501916531 1.0685524403338962 1.049055323407914 1.1045690476692032 1.058041244936812 0.9989037671018354 1.0138328096227363 1.071837782162465 0.9771567370736547 1.0 20.473237620718972 2.8183418165449545 8.63817162361679 1.0214500094411996 1.060448565670441 0.30829860014257937 0.0323390868134057 0.5334765502638291 53.86537644052572 0.010069788633353708 0.010685434581216874 658.1756583901961 -2.8183418165449545 0.03899855622924142 DSDEADLVLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSDEADLVLAK 11 0 Q13185 Q13185 CBX3 Chromobox protein homolog 3 0 ; 179.1 1.687e-05 126657000.0 225310.0 202940.0 167265.0 165915.0 164868.0 221200.0 202930.0 224450.0 286550.0 225300.0 False True 224096.95599429455 209694.73522017925 190814.4581065574 186919.8219883519 185862.96255080405 205908.96464879144 193113.5006321186 241199.59873400652 215933.59207327905 210921.16111096574 1.0624678662583174 0.9941853824228606 0.9046719499432767 0.8862070595657934 0.8811963748531682 0.976236635358093 0.915571958806549 1.1435533422230275 1.0237644764323874 1.0 17.686344318256676 1.7530078896916435 24.999999999999638 1.0675089709604877 0.9424655806598391 0.3865072269404134 0.06288110053353552 4.359489251215306 7553.966083682557 0.02985517831366387 0.01655626434643985 56.62495758232638 -1.7530078896916435 -0.1250433903006486 DSDGRPDWEVAAEAWDNHLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSDGRPDWEVAAEAWDNHLR 20 1 K7EQL6;Q8NFA0;P35125-2;P35125;P35125-3 K7EQL6 USP32;USP6 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32;Ubiquitin carboxyl-terminal hydrolase 6 0 ;; 198.07 9.565599999999999e-22 259198000.0 235690.0 253036.0 246947.0 247901.0 248975.0 269901.0 269823.0 255712.0 312710.0 273617.0 False True 234421.07122762076 261458.15029650778 281714.99109819706 279285.241182138 280680.49045955826 251243.3791486138 256770.63066604274 274794.5279192254 235646.81059931952 256154.52880470068 0.9151548962319924 1.020704773468404 1.0997853226049514 1.0902998377009872 1.0957467422860083 0.980827394780003 1.0024051960518403 1.072768571383473 0.9199400521978793 1.0 17.966654873261593 -0.3446950570174101 7.904238163801752 1.0000045619514975 1.0296053237086 0.0 0.06570428807207407 0.0 0.0 0.063012638001119 0.014852221210348132 0.45217332967837354 0.3446950570174101 0.02960076175710258 DSDIIDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSDIIDFR 8 0 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 Q709C8-3 VPS13C Vacuolar protein sorting-associated protein 13C 0 ; 109.01 0.0086081 165760000.0 607990.0 632520.0 573890.0 590250.0 595640.0 666690.0 657290.0 596240.0 729700.0 634450.0 False True 604716.6493940393 653573.0458335851 654688.723658698 664975.5894803042 671491.2233651221 620603.2895194514 625494.3716083624 640734.456445373 549875.2124790492 593958.8578200268 1.0181120147168041 1.1003675376310689 1.1022459132296882 1.1195650687337604 1.1305349091512127 1.0448590526913197 1.0530937679826489 1.0787522536443417 0.9257799681567588 1.0 19.18000347671759 1.2509318642381582 24.95930747491848 0.9628900011202604 1.0824354271826515 0.6212266723321627 0.036857129359214674 119.5911440044885 241281.2235073808 0.02528851056786602 0.009092561444785898 17.820991548483143 -1.2509318642381582 0.11954542606239116 DSDKEGTSNS(ph)TSEDGPGDGFTILSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSDKEGTSNSTSEDGPGDGFTILSSK 26 1 Q9P0M6;Q5SQT3 Q9P0M6 H2AFY2 Core histone macro-H2A.2;Histone H2A 1 DSDKEGT(0.02)S(0.135)NS(0.683)T(0.135)S(0.027)EDGPGDGFTILSSK;DS(0.013)DKEGT(0.179)S(0.133)NS(0.508)T(0.133)S(0.035)EDGPGDGFTILSSK 146.58 1.2453e-07 304970000.0 276470.0 132951.0 223860.0 175362.0 305590.0 518720.0 239830.0 388980.0 824610.0 379900.0 True False 274981.5162387046 137376.19366442345 255377.5421739986 197562.81121972916 344505.07512616273 482862.1073355375 228228.50666042964 418007.66280041717 621395.9147078916 355654.45675124635 0.7731704496283975 0.3862631018863003 0.7180496049642253 0.5554908914241712 0.9686510841817405 1.3576720273556515 0.641714176015678 1.1753196251742242 1.7471900124184625 1.0 18.44011671668627 3.1061917256511022 3.9294228307050165 1.150058798711267 0.6004270854664397 0.48439665071766336 0.27863479452069667 0.20422825888376422 5.8993218052984995 0.08305028950733755 0.10088664643516551 1277.002435794442 -3.1061917256511022 -0.5496317132448272 DSDKPET(ph)PPVVNVPVPVLIGPISGMSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSDKPETPPVVNVPVPVLIGPISGMSR 27 1 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;Q7Z3U7-3 A0A286YFF8 MON2 Protein MON2 homolog 1 DS(0.001)DKPET(0.999)PPVVNVPVPVLIGPISGMSR 126.76 0.0001084 233860000.0 291130.0 215980.0 207820.0 187390.0 191590.0 281540.0 261890.0 214400.0 404440.0 231910.0 True False 289562.5884275838 223168.76373733304 237079.2495961778 211113.55478647043 215987.85085710144 262077.80247387307 249221.3801830456 230399.61670114033 304771.1812183458 217109.30525186 1.3337180002104174 1.027909713397331 1.091981061434246 0.9723837241410075 0.9948346092607242 1.2071237673108801 1.1479074095600539 1.061214840302965 1.4037683961302014 1.0 17.728062035272504 2.7248115958014236 24.874062279272728 1.1574967447712912 1.075264208057181 0.07702872694208629 0.1355188321254277 2037.5077335876165 3686155.2976300055 0.04269502286375426 0.04043574614194908 530.6541876419766 -2.7248115958014236 -0.08223253671411013 DSDKTDTDWR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSDKTDTDWR 10 1 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;; 94.297 0.0074786 6915800000.0 13363600.0 11585400.0 10602300.0 9856500.0 10261300.0 13676700.0 13284700.0 13023400.0 18747000.0 13249400.0 False True 13291651.862435529 11971013.035477798 12095011.68315639 11104331.889390277 11568015.731509844 12731261.920488816 12642068.30851774 13995272.239485202 14127053.046929887 12403811.948617954 1.0715779888872388 0.9651075883016448 0.9751044060696219 0.8952354272532754 0.9326177935806875 1.0263991402987487 1.0192083176435396 1.1283041292031657 1.138928347628161 1.0 23.564280223067932 2.1388336677730995 1.991357029643572 1.0992953895155821 0.9669216043921529 0.42488437756302144 0.05724539294866982 0.276519163477987 2.146977929664339 0.029985772875516525 0.017747396778066766 137.66821067791693 -2.1388336677730995 -0.13237378512342923 DSDLMEAFHCNQTQVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSDLMEAFHCNQTQVNR 17 0 O60671-2;O60671 O60671-2 RAD1 Cell cycle checkpoint protein RAD1 0 137.73 6.0145000000000015e-06 296740000.0 99521.0 84893.0 64335.0 63565.0 72263.0 106400.0 75155.0 100180.0 148050.0 85895.0 False True 98985.18999382264 87718.61218609782 73392.80879015544 71612.32248253371 81465.26471364226 99044.81843865909 71519.46553001944 107655.94030373248 111565.06126836124 80413.10756159072 1.2309583971494575 1.0908496742140155 0.9126970840412028 0.890555341710725 1.0130843986006344 1.2316999235827046 0.8894005927483977 1.338785971195998 1.3873989533722515 1.0 16.29514306345132 1.7013543535408633 9.334978309047122 1.2696317948257658 1.0354658296888637 0.27173139591581574 0.15146835994629193 0.13135562566692616 22.48579797102876 0.07175320123475097 0.03850056339617776 50.275263276033094 -1.7013543535408633 -0.23416596513690213 DSDLSHVQNK ddPTM_BT-474_Trastuzumab_2h_R1 6 DSDLSHVQNK 10 0 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;; 161.17 7.1537e-06 8524560000.0 8194090.0 8098960.0 7835100.0 7442550.0 7400300.0 9548870.0 9495510.0 8923940.0 12551150.0 9662930.0 False True 8149973.929888974 8368528.987675293 8938213.976089956 8384776.066898158 8342684.339985427 8888779.09252216 9036175.904929217 9589889.71764912 9458087.259293435 9046233.534549408 0.9009245559229224 0.925084340981711 0.98805916760308 0.9268803458229318 0.9222273897885808 0.9825944752116007 0.9988881969958239 1.0600975180469727 1.0455276467461374 1.0 23.108885809908507 2.2939580098205914 1.8617795178310401 1.0397757660676632 0.9352652919200158 0.732006935833819 0.02675901593173859 0.170070391772653 1.1958109795988683 0.013052184177238324 0.008818257849737084 196.76960319272504 -2.2939580098205914 -0.10451047414764736 DSDPVMAGIGEEIAHFQK ddPTM_BT-474_Trastuzumab_2h_R1 3 DSDPVMAGIGEEIAHFQK 18 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 ;; 249.69 1.0136e-24 314153000.0 719803.0 660782.0 669786.0 604697.0 609188.0 776922.0 776619.0 707967.0 951579.0 769576.0 False True 715927.6606256322 682775.7294188454 764086.046915723 681251.5781990198 686764.4808598354 723215.2108176682 739050.9719973159 760799.0925235836 717075.1059553259 720461.0008128388 0.9937077229966758 0.9476928364596056 1.0605515719152954 0.9455773142896254 0.9532292241842566 1.0038228439870056 1.0258028833809234 1.0559892786219303 0.9953003773227241 1.0 19.45856081259992 2.436847669105792 4.111621044250385 1.0270027072194843 0.9806034699614503 0.20563666477080855 0.034970492795677266 0.28559268192901166 10.554804416602632 0.01235143410467387 0.010439499235398978 273.43094857842493 -2.436847669105792 -0.046399237258033965 DSDQVAQS(ph)DGEES(ph)PAAEEQLLGEHIK ddPTM_BT-474_Trastuzumab_2h_R1 3 DSDQVAQSDGEESPAAEEQLLGEHIK 26 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 2 DSDQVAQS(1)DGEES(1)PAAEEQLLGEHIK;DSDQVAQS(1)DGEES(1)PAAEEQLLGEHIK;DSDQVAQS(1)DGEES(1)PAAEEQLLGEHIK 205.09 1.8655999999999998e-25 1577510000.0 1660260.0 1339670.0 1075670.0 1034790.0 1222740.0 1508640.0 1363630.0 1414020.0 1913320.0 1506480.0 True False 1651321.3446322286 1384260.1061023837 1227114.9861087515 1165794.3079005918 1378448.6912522146 1404351.2677565662 1297666.0073275315 1519541.352648072 1441807.923174476 1410335.1566375843 1.170871573937918 0.9815114510813395 0.8700874968148332 0.8266079891817995 0.9773908597291221 0.9957571157090883 0.9201117913144347 1.0774327970883524 1.0223158065575892 1.0 20.427606619438123 1.7399105411390872 24.999999999969088 1.0375529610896188 0.9568603537823804 0.1140950395321878 0.08798943313285039 0.42228062915708947 7848.2569150438885 0.04252555680998409 0.023582596252143484 54.942768743755536 -1.7399105411390872 -0.08069260730723837 DSDQVAQS(ph)DGEESPAAEEQLLGEHIK ddPTM_BT-474_Trastuzumab_2h_R1 5 DSDQVAQSDGEESPAAEEQLLGEHIK 26 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(0.989)DGEES(0.011)PAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK 295.25 1.4800999999999995e-70 4445130000.0 3060586.0 2293779.0 2179898.0 2010846.0 2252490.0 2864195.0 2542959.0 2667560.0 3586737.0 2780227.0 True False 3044108.145039071 2370126.0473963143 2486808.690386919 2265418.897423313 2539331.2499457803 2666199.941239807 2419946.358123251 2866626.8727952167 2702833.7261634483 2602790.5325879143 1.1695555623572833 0.9106096006272678 0.9554394252058093 0.8703807967100764 0.9756187515485399 1.024362086713465 0.9297507147903814 1.1013667204117936 1.0384368977537592 1.0 21.311627780506672 1.7413337462620322 24.999987604939005 1.0536398156791715 0.9709060640902234 0.13553664704801704 0.0796251039445018 0.7691441614825729 6975.694483253656 0.035705661974808754 0.01980059040455565 55.123114332978446 -1.7413337462620322 -0.08273375158894813 DSDQVAQS(ph)DGEESPAAEEQLLGEHIKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSDQVAQSDGEESPAAEEQLLGEHIKEEK 29 1 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK 157.42 1.8039e-09 322700000.0 168920.0 120200.0 125220.0 111480.0 130090.0 174790.0 178520.0 186860.0 298280.0 192930.0 True False 168010.5534887763 124200.78433756571 142849.88756824838 125593.35656969821 146656.19039615997 162707.17871140238 169884.305587374 200804.44205585372 224772.8907472259 180617.04222431703 0.9302032157082711 0.6876470946928406 0.7908992740055847 0.6953571768367115 0.8119731592881505 0.9008406776439649 0.940577386802661 1.1117690755142862 1.2444722157949502 1.0 17.46257449999381 2.1144387341847155 1.3940843852418991 1.138213429663295 0.7743862836152888 0.7293724747150572 0.08726615844327709 0.19785272793843187 0.7291918871943349 0.05404825193749392 0.028142043881310953 130.14837026440082 -2.1144387341847155 -0.36382714604800626 DSDQVAQSDGEES(ph)PAAEEQLLGEHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSDQVAQSDGEESPAAEEQLLGEHIK 26 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 DSDQVAQSDGEES(1)PAAEEQLLGEHIK;DSDQVAQSDGEES(1)PAAEEQLLGEHIK 152.19 6.7547e-08 315050000.0 169028.0 159723.0 138004.0 128769.0 126242.0 151176.0 135806.0 149943.0 209201.0 187743.0 True False 168117.97202877622 165039.2835004075 157433.76364772854 145071.14219701683 142318.17040504288 140725.55895002565 129236.54495069978 161132.50805512624 157646.21669978034 175761.08100513104 0.9565142127446764 0.9389978859744808 0.8957259636058595 0.825388313313695 0.8097251654983173 0.8006639362096175 0.7352967119434533 0.9167701241574763 0.896934724105265 1.0 17.423256122523803 4.060832693617713 2.6925185575004127 0.8448201542930698 0.9502338708899062 0.21315426768653734 0.06911998530274564 0.36754755349806095 5.339276083177451 0.018137666795505367 0.04685280575666233 11503.571432286122 -4.060832693617713 0.1054137165968364 DSEAWVPDSEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DSEAWVPDSEER 12 0 Q96F63;M0QXS4 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 0 91.313 0.019467 206460000.0 140170.0 168010.0 151730.0 195630.0 201950.0 141510.0 129770.0 111360.0 109900.0 129040.0 False True 139415.34029435093 173602.11128581042 173092.26513919787 220396.73794160393 227667.13544857063 131727.74677870923 123492.5293304587 119670.24867462227 82816.61758455199 120804.55672329779 1.1540569666894358 1.437049362992533 1.432828941508099 1.824407488588543 1.8845906282330145 1.09042034797107 1.0222505895478569 0.9906103868972952 0.6855421668757332 1.0 16.882315348289527 2.559192071806699 5.722623075803574 0.9475585278848347 1.548650459354029 0.6627489804748246 0.2122619011922332 0.15086597328244614 8.142925571491055 0.07516104935529914 0.07019958355342855 362.4032400450984 -2.559192071806699 0.6010919314691942 DSEDNPQTLLFSATCPHWVFNVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSEDNPQTLLFSATCPHWVFNVAK 24 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 235.99 2.129e-37 617120000.0 670120.0 705870.0 734460.0 709980.0 523150.0 833200.0 831770.0 742080.0 1099980.0 882070.0 False True 666512.1483773305 729364.4562425739 837865.5839592386 799863.3952041104 589770.0515470146 775602.8451418305 791534.107430036 797457.7778058872 828904.6679768463 825775.537421879 0.8071347698894322 0.8832478357492809 1.0146408388108776 0.9686208405995316 0.7142014080343337 0.939241730947019 0.9585342160912796 0.9657076792267284 1.0037893233853072 1.0 19.655390155529155 2.485638867645016 24.253287718718987 0.9734629027261875 0.8841744943299146 0.2822064035887244 0.07802973717886542 440.5693038195702 1254496.2299569421 0.027621683997736228 0.02420598174156658 305.94183531230397 -2.485638867645016 -0.08928840839627294 DSEEAEIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSEEAEIIR 9 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 138.06 0.0030433000000000005 0.0 2366540.0 2517800.0 2311810.0 2208180.0 2320860.0 2505160.0 2433470.0 2230700.0 2770900.0 2288720.0 False True 2353798.811587314 2601603.450957758 2637292.7533872584 2487735.361590204 2616407.7641850407 2331984.185712325 2315753.7593418485 2397166.161265084 2088048.8231577317 2142651.930128227 1.098544648568492 1.2141978892493588 1.2308544921850324 1.1610543582042863 1.2211072304349786 1.0883635148209851 1.08078859042834 1.1187846833907482 0.9745161095917116 1.0 21.03096607521215 1.822483025654236 0.7445853260902137 0.9928514664411426 1.1890657392387871 0.6641083219937289 0.04904816356535228 0.38686199545007777 0.41438003130245815 0.043776731967632904 0.02147212621635795 66.44817012156555 -1.822483025654236 0.19621427279764447 DSEEEFGS(ph)ERDEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSEEEFGSERDEYR 14 1 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 DSEEEFGS(1)ERDEYR;DSEEEFGS(1)ERDEYR 92.236 0.0040015 228370000.0 643310.0 574360.0 470290.0 431400.0 544130.0 548710.0 554500.0 502430.0 708140.0 530220.0 True False 639846.4904384597 593477.2253920478 536502.7441660403 486015.195767562 613421.7301888122 510778.96922440466 527676.7166042959 539923.8778878449 533628.3855898503 496380.90565582016 1.2890231738327893 1.195608490636729 1.0808287306241384 0.9791174282287048 1.235788329485312 1.0290060786072377 1.063047975036686 1.087720884779997 1.0750380997931792 1.0 18.921088094648265 4.424181194946925 2.6777532284711665 1.0731444156341192 1.2837246163726512 0.5470692593824944 0.06571507070887152 0.21227897212616198 2.820534902164796 0.01582287053478646 0.07239667927133485 26557.13339045665 -4.424181194946925 0.210580200738532 DSEGTWR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSEGTWR 7 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 132.09 0.0079152 1003100000.0 1069160.0 1410000.0 1286810.0 1294790.0 1173650.0 1314090.0 1307030.0 1181150.0 1353710.0 1283200.0 False True 1063403.7613548434 1456930.997637002 1467981.662846971 1458710.2812421897 1323107.370731441 1223250.0513351269 1243803.9655605264 1269293.4107581724 1020106.3092846568 1201305.0773972084 0.8852070813342876 1.2127901771576977 1.2219890604537806 1.2142713026758238 1.1013916411625713 1.0182676110763347 1.035377265078574 1.0565953933269556 0.8491650692885245 1.0 20.196171146476168 2.797187530764974 2.914910643059403 1.0016288294135545 1.146522132226527 0.2901473014379199 0.10525160616867955 0.35366140831240056 5.951355232355792 0.03495757742107187 0.03622627376325138 626.884498439365 -2.797187530764974 0.14489330281297264 DSEGYIYAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSEGYIYAR 9 0 A0A1B0GW23;Q03154;A0A1B0GU86;Q03154-3;Q03154-4;C9JMV9;A0A1B0GV31;C9JYZ0;A0A1B0GVA5;F8WC59 A0A1B0GW23 ACY1;ABHD14A-ACY1 Aminoacylase-1 0 133.68 0.00062852 224610000.0 271300.0 343980.0 332120.0 319550.0 354300.0 369520.0 332540.0 264690.0 337980.0 313170.0 False True 269839.35094426374 355429.1663596987 378879.6091612103 360004.9972358008 399418.0048993736 343975.9521565164 316453.76977383666 284442.5118685859 254689.3576999713 293183.222481674 0.920377873809374 1.2123107296220388 1.2922963529568714 1.2279181400235262 1.3623494602401407 1.1732456899985717 1.0793720291877111 0.970186866290978 0.8687037257593796 1.0 18.16144302151345 1.9598303401745536 2.0387874885562423 0.9351204476724421 1.2129049402459073 0.505887252995469 0.11159711905744572 0.26134513159758493 2.009839118123421 0.06719903825302152 0.033865872154149004 91.16546262637253 -1.9598303401745536 0.27778449257346527 DSEHIDDETRR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSEHIDDETRR 11 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ; 152.7 2.1308000000000007e-05 300670000.0 179503.0 200016.0 199186.0 201389.0 191204.0 231100.0 241230.0 205087.0 268340.0 245660.0 False True 178536.57579265817 206673.41164777483 227229.6574442511 226884.82675112036 215552.69604510276 215124.6009508845 229560.78331191043 220391.63335068454 202211.2025717806 229981.76847989258 0.7763075176468508 0.8986512844640744 0.9880333512789641 0.986533968543498 0.9372599292102088 0.9353984986409605 0.9981694846040853 0.9583004548899862 0.8792488374549569 1.0 17.81115997227529 4.642108948024164 2.7619761818995903 0.959804095671479 0.7605284113292592 0.7149727405110529 0.03534843408971504 0.17842373133915704 2.0722046689080194 0.008590678189431258 0.07192980503639154 43864.07223050594 -4.642108948024164 -0.19927568434221976 DSENLAS(ph)PSEYPENGER ddPTM_BT-474_Trastuzumab_2h_R1 5 DSENLASPSEYPENGER 17 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 DSENLAS(1)PSEYPENGER;DSENLAS(1)PSEYPENGER;DSENLAS(1)PSEYPENGER;DSENLAS(0.994)PS(0.006)EYPENGER;DSENLAS(0.999)PS(0.001)EYPENGER 468.66 2.039399999999999e-206 6726470000.0 2424270.0 2651390.0 2420850.0 2331800.0 2489270.0 2705070.0 2557530.0 2264440.0 2870900.0 2684950.0 True False 2411217.999681719 2739639.9133508974 2761684.637594592 2627005.640915162 2806263.779440766 2518074.877949844 2433812.5031866226 2433424.011393334 2163405.163089084 2513594.1922986563 0.9592709941284058 1.089929282039566 1.0986994822219331 1.045119235620445 1.116434700572914 1.001782581160044 0.9682599166737117 0.9681053603835679 0.8606819548348303 1.0 21.261320321701795 2.379993907372601 2.4651805691760322 0.9464598102347982 1.0645710222944516 0.5037153135686651 0.05240902305697174 0.22854225740154296 2.8438006557597024 0.02045196923218616 0.016046796163660403 239.8799266525017 -2.379993907372601 0.11811121205965336 DSEPFSNPLAPDGHDVDDPHSFHQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSEPFSNPLAPDGHDVDDPHSFHQSK 26 0 Q13123;E7EQZ7;D6RAY9 Q13123 IK Protein Red 0 127.16 3.3978e-05 325610000.0 50769.0 77405.0 72382.0 53574.0 73588.0 102670.0 70418.0 36782.0 129750.0 78708.0 False True 50495.66534496617 79981.3786326893 82572.75644437752 60356.46290693403 82958.99560975192 95572.66455918364 67011.6123171168 39526.85961521146 97774.85106092464 73684.78805469105 0.6852929441486183 1.0854530595015723 1.1206214827284235 0.8191170050205704 1.1258632588883513 1.297047424337392 0.9094361819617203 0.5364317474303305 1.3269340068991342 1.0 16.16907919068447 2.015018194413683 24.9758787766013 0.8579441760097061 1.0315718308765964 0.0 0.24469345560828576 560.4854446730494 932106.7069529706 0.09105292399830538 0.06722368304037529 103.51855340259368 -2.015018194413683 0.17362765486689036 DSEQVAELKQELATLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSEQVAELKQELATLK 16 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ; 249.16 1.4527e-20 890890000.0 1035400.0 961260.0 924260.0 926460.0 938690.0 1211930.0 1236460.0 1111800.0 1999540.0 1357080.0 False True 1029825.5214437557 993254.958006058 1054387.7741880645 1043749.7410079149 1058226.607448469 1128152.1316763547 1176647.706064107 1194768.1616060056 1506780.1594632834 1270469.9925453574 0.8105862613728672 0.7818011947028316 0.8299194631709662 0.821546157825252 0.8329410483189266 0.8879801477373959 0.9261515131945149 0.9404143101501478 1.1860021632187345 1.0 20.27693086984944 1.8403106661362172 1.0862079202207595 1.0766234092982685 0.8151974577048339 0.7660447050536742 0.05552066266858474 0.22550541695333493 0.49096648877384136 0.044348206805858964 0.01865949504507023 69.23260390233891 -1.8403106661362172 -0.2614259515934346 DSES(ph)PSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSESPSQK 8 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 DSES(1)PSQK;DSES(0.97)PS(0.03)QK 172.88 0.00029475 244355000.0 305279.0 212590.0 195077.0 208047.0 189440.0 305710.0 262722.0 345710.0 380520.0 301140.0 True False 303635.41178368544 219665.92963663128 222542.1459603195 234385.7288684607 213564.0611011495 284576.9872639331 250013.13316449692 371508.63567980943 286745.94470676675 281920.9873810749 1.0770230858097094 0.7791755118241943 0.7893777190114173 0.8313880106827222 0.7575316158086279 1.009421078960922 0.8868198692371636 1.3177757325943178 1.0171145730245683 1.0 18.10493135661455 1.8506155973270275 8.620497880231616 1.1407720141191628 0.8665498616035168 0.419022981460495 0.12568427433287074 0.24671043334140716 17.277687448825855 0.05180137234440073 0.03251010292427986 70.89499844583726 -1.8506155973270275 -0.2742221525156461 DSES(ph)PSQKK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSESPSQKK 9 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 DS(0.015)ES(0.884)PS(0.101)QKK;DSES(0.993)PS(0.007)QKK 127.52 0.00027142 453050000.0 834130.0 527740.0 449960.0 450440.0 473490.0 518170.0 665300.0 687960.0 1296870.0 823230.0 True False 829639.1367605553 545305.5068744329 513310.4568775688 507465.6578153467 533786.1449048951 482350.12754097686 633116.8973071915 739299.0685900949 977273.7656676791 770690.7565973372 1.0764877217724527 0.7075542326237327 0.6660394619806737 0.6584556172126018 0.6926074308476264 0.6258672799847661 0.8214927866819818 0.9592681140411763 1.2680491588901661 1.0 19.5557925623071 1.622812563466658 2.535814777279886 1.1310513350611082 0.7300103353233119 0.5626199194901647 0.1366742269099445 0.1666185400004031 2.437491420031586 0.093069745011603 0.03661177864589162 41.95778599007429 -1.622812563466658 -0.4010409997377963 DSFDDRGPSLNPVLDYDHGSR ddPTM_BT-474_Trastuzumab_2h_R1 7 DSFDDRGPSLNPVLDYDHGSR 21 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;;;; 237.45 4.4233e-30 16745460000.0 6981555.0 11663250.0 11566171.0 12849153.0 12727532.0 12937573.0 13420198.0 11980582.0 13195779.0 13348457.0 False True 6943967.083603687 12051454.225666502 13194587.341839444 14475854.452346655 14348307.758207552 12043229.030281004 12771011.752605107 12874633.865002722 9943856.079829497 12496547.046070997 0.5556708631595093 0.9643827355857925 1.0558586538501382 1.1583883451147383 1.1481817901624882 0.9637245381369153 1.0219632435681827 1.0302553031279627 0.7957282954378919 1.0 23.57502617928447 4.735908943206008 3.356197789509114 1.0295749851197187 0.494364638404501 0.6780624339010499 0.09561047006399731 0.17886377443787366 3.359672932922753 0.023783597934026582 0.24576528858137844 54438.85011075345 -4.735908943206008 -0.5352103467152176 DSFIENSSSNCTSGSSKPNS(ph)PSIS(ph)PSILSNTEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSFIENSSSNCTSGSSKPNSPSISPSILSNTEHK 34 1 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 2 DSFIENSSSNCTSGSS(0.001)KPNS(0.999)PSIS(1)PSILSNTEHK 257.84 1.9779e-59 490660000.0 342520.0 283680.0 290580.0 248350.0 247870.0 361000.0 420450.0 403890.0 574980.0 390670.0 True False 340675.9103775493 293122.11731181876 331491.13823336246 279791.0845361011 279434.77525940636 336044.91970259364 400111.2272250242 434030.3227118635 433283.8833372676 365737.1061305856 0.9314775686334428 0.8014557790238549 0.906364524344993 0.7650060107278323 0.7640317883404338 0.9188154936147211 1.0939858726890166 1.1867276123656263 1.1846866945531214 1.0 18.480447478241835 2.286799425749689 2.9373564526189813 1.1437496598569215 0.8325348027894476 0.7782508633377856 0.07113051880428682 0.10462358041768482 1.8534289428513235 0.027483335710455574 0.02082439472826688 193.5527854706593 -2.286799425749689 -0.31121485706747387 DSFLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSFLKR 6 1 P46778;M0R181;Q9H553-2;Q9H553 P46778;Q9H553 RPL21;ALG2 60S ribosomal protein L21;Alpha-1,3/1,6-mannosyltransferase ALG2 0 93.883 0.072335 2854100000.0 3093000.0 3240000.0 3130100.0 2965600.0 2952800.0 3343600.0 3446000.0 3334900.0 4784500.0 3657200.0 False True 3076347.631664603 3347841.441378642 3570790.8726830743 3341044.6559301815 3328821.5773832058 3112464.8019877854 3279303.81500163 3583767.172279074 3605424.084015367 3423794.36491355 0.8985199763135541 0.9778161549907142 1.0429338015378256 0.9758309932887987 0.9722609545410761 0.9090688488431968 0.9577981226347487 1.0467238362808517 1.053049248799264 1.0 21.707164624559635 1.7384884210064708 7.422133140033965 1.0366137602811312 0.9646172412181465 0.4012304891476999 0.0396670714613208 0.13023742613511133 22.33948170525275 0.02036400263832737 0.010790270727692107 54.76315000254533 -1.7384884210064708 -0.07199651906298465 DSFPWEVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSFPWEVPK 9 0 P31153 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 107.47 0.0070429 0.0 87659.0 81990.0 71570.0 69909.0 74690.0 80493.0 90775.0 74702.0 117670.0 89673.0 False True 87187.05368383045 84718.98758599834 81646.43390240814 78759.4722320688 84201.32877768613 74928.7083701409 86383.86645582496 80276.64256906982 88671.80519721776 83949.9923670821 1.0385593997744977 1.0091601582946395 0.9725603493255681 0.9381712852061131 1.0029938824711861 0.8925397877644291 1.0289919512809533 0.9562435958070122 1.0562455421018853 1.0 16.357242573538755 -0.5751701967929648 5.158372151760514 1.0000000012360404 0.9843311176182912 0.0 0.04749273561948383 0.0 1.2419966515061902e-10 0.04299450476847069 0.010133901509688244 0.2659682545631749 0.5751701967929648 -0.015668883617749207 DSFPWEVPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSFPWEVPKK 10 1 P31153 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 104.52 0.004282 574570000.0 600570.0 514990.0 466010.0 450900.0 443920.0 667130.0 669070.0 645920.0 913280.0 667300.0 False True 597336.5978496001 532131.1308319714 531620.1573684674 507983.893768182 500450.58068001637 621012.8733550995 636704.5280043936 694121.8303153006 688214.3813250185 624712.3426957275 0.9561786393910565 0.85180185257065 0.8509839185735417 0.8131484829900356 0.8010896319424345 0.9940781235013474 1.0191963316378831 1.1111063170611626 1.1016500464121937 1.0 19.252832508534265 2.476032740676981 2.5329625281065185 1.0725581199314997 0.8524785155036927 0.7772257228946715 0.05139528065971406 0.12394428728566782 1.6120209924778621 0.019866051400908743 0.016768645083169498 299.24902265406627 -2.476032740676981 -0.22007960442780705 DSFWAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSFWAK 6 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ; 116.35 0.055015 1365820000.0 1587280.0 1607200.0 1474870.0 1394930.0 1266360.0 1727990.0 1698800.0 1630620.0 2230000.0 1688220.0 False True 1578734.2608433883 1660694.6804270835 1682518.87620015 1571527.994974605 1427623.4396962204 1608538.118550927 1616622.5539537899 1752305.1445205836 1680446.3804690694 1580476.354242143 0.9988977415612206 1.050755790157586 1.0645644091315354 0.9943381884559552 0.9032868070846797 1.0177552572890214 1.0228704463781613 1.1087196210289616 1.063253098319755 1.0 20.59192802033831 1.944536801263922 7.342365543605703 1.0688305306976027 1.0058486184899118 0.1832398667440951 0.04761065903114394 0.39958279452618745 46.21075334002874 0.02153575342547113 0.013504896658469262 88.01096872989743 -1.944536801263922 -0.0629819122076909 DSGACFSASEPDAVHVVLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DSGACFSASEPDAVHVVLDR 20 0 H0YER3;Q8NB37-3;Q8NB37 H0YER3 PDDC1 Parkinson disease 7 domain-containing protein 1 0 ;;; 256.13 3.5354e-36 652610000.0 358676.0 416663.0 351671.0 389665.0 372296.0 425505.0 430448.0 343316.0 454121.0 444592.0 False True 356744.9282686495 430531.37607689726 401183.2200208716 438996.5490467474 419705.6888287247 396090.84088103066 409625.58576895506 368935.983243324 342208.9644596392 416217.75792563875 0.8571112632161777 1.034389734408727 0.9638781920797977 1.054728061663285 1.0083800626875443 0.9516433005047229 0.9841617229655505 0.8864013517396293 0.8221873236864106 1.0 18.666978993389744 1.738584584273937 5.749992593440497 0.8910388866518039 0.983872758741941 0.21519772280432414 0.0650836914682403 0.1875614630365574 15.956371489616627 0.0310364216098138 0.016101324483143987 54.77527722666554 -1.738584584273937 0.09283387209013716 DSGNWDTSGSELS(ph)EGELEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSGNWDTSGSELSEGELEKR 20 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 DSGNWDTSGS(0.001)ELS(0.999)EGELEKR 115.55 6.606e-05 152910000.0 58763.0 54031.0 43316.0 39638.0 34240.0 58910.0 71209.0 55233.0 82774.0 59525.0 True False 58446.62653718308 55829.38917257075 49414.51629057859 44656.16673582431 38600.261043619976 54837.69035922374 67764.34862520343 59354.76692749108 62375.45681477435 55726.063538083596 1.0488202974760676 1.0018541707044593 0.8867397614907493 0.8013515382314051 0.6926787681179073 0.9840582104233375 1.216026116377174 1.0651168081687235 1.119322859978195 1.0 15.766064625291582 2.473929551609919 23.959246060192754 1.104517991513643 0.8830508028028603 0.48064833943196617 0.10471550280263607 50.97071279540092 382611.42192721117 0.038573786941343155 0.03245098745759028 297.8033313299032 -2.473929551609919 -0.22146718871078264 DSGPPPSTVSEAEFEDIMKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSGPPPSTVSEAEFEDIMKR 20 1 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 ; 141.86 2.9835e-07 154641000.0 70838.0 69910.0 63503.0 61296.0 63572.0 82359.0 77759.0 83211.0 117965.0 81617.0 False True 70456.6160788417 72236.91208851256 72443.67042202913 69056.06731517942 71667.51737923501 76665.71618223231 73997.50010177355 89420.62735689632 88894.10640001514 76408.13318417087 0.9221088533731888 0.9454086767752304 0.9481146496200087 0.9037790145812049 0.9379566597510073 1.003371146333867 0.968450569567158 1.170302474755674 1.163411572767373 1.0 16.221438592155458 1.8231858487127761 5.319830599505426 1.1256065721580166 0.9454951748102277 0.6910789186416136 0.05015291725610561 0.10828197116480623 4.736705033915881 0.02268680553973119 0.013073617838942507 66.55579091135824 -1.8231858487127761 -0.18011139734778892 DSGPPTKK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSGPPTKK 8 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 ;;; 94.692 0.016322 2437140000.0 2639300.0 2621900.0 2274350.0 2135710.0 2260480.0 2115040.0 2938640.0 2855170.0 4062360.0 3013170.0 False True 2625090.3020537985 2709168.3565279827 2594558.710995419 2406090.667020721 2548338.729085338 1968832.263068624 2796486.7565050437 3068237.2836594908 3061245.810835128 2820866.910895379 0.9305970061595574 0.9604027563526769 0.9197735281214927 0.8529614274701806 0.9033885006210601 0.6979529078327527 0.9913572121051977 1.0876930321698848 1.0852145484110947 1.0 21.42770717019249 2.008293603665486 24.99803804515256 1.060415952821119 0.8800443504635379 0.5740458105558761 0.0707363246519536 132.3763092384709 398998.1752662316 0.027241931835187968 0.02008866061341388 101.92802369585326 -2.008293603665486 -0.1803716023575811 DSGRLS(ph)PDLSVCGQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSGRLSPDLSVCGQPR 16 1 Q8TF76;Q8TF76-2 Q8TF76 GSG2 Serine/threonine-protein kinase haspin 1 DS(0.011)GRLS(0.989)PDLSVCGQPR 137.23 7.9617e-06 201390000.0 66800.0 86618.0 85519.0 74187.0 83329.0 97166.0 92408.0 84483.0 123060.0 104700.0 True False 66440.35622217772 89501.02776831329 97559.33185552659 83579.06659343561 93940.45422032147 90449.14312416107 87937.87200715912 90787.5504559816 92733.51191951735 98017.95636182032 0.6778386194558264 0.9131084863464413 0.9953210154208808 0.8526913812089137 0.9584004574993658 0.9227813604915411 0.8971608394134244 0.9262338639345975 0.9460869759129016 1.0 16.580758446952057 4.734145017493452 4.934936444838676 0.9310511778573829 0.6656215643665591 0.7751747642182784 0.04155263230582056 0.06885858214206673 5.124844220707794 0.009128515201380409 0.06235089849507615 54218.19029129735 -4.734145017493452 -0.26542961349082383 DSGS(ph)DQDLDGAGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSGSDQDLDGAGVR 14 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 DS(0.003)GS(0.997)DQDLDGAGVR;DS(0.022)GS(0.978)DQDLDGAGVR 213.02 1.7082e-09 405890000.0 486460.0 476240.0 411860.0 378840.0 420660.0 451250.0 457730.0 433030.0 506970.0 436880.0 True False 483840.95341078687 492091.36050684005 469846.30804870505 426801.1051566597 474228.5575528376 420056.14962824184 435587.85120159417 465344.89748178574 382034.03654995735 408997.94436821394 1.182991161870469 1.2031634077451951 1.1487742530698648 1.043528729260355 1.1594888533862597 1.0270373125642713 1.0650123238992169 1.1377683039473754 0.9340732436689672 1.0 18.641734066608148 7.999999999999999 0.1642233138754639 0.9809496913995027 1.8797930189716585 0.5445955251722433 0.05693450536836619 49.45672399796366 0.5204944492823314 0.15609737486098077 10.838250891703197 99999999.99999979 -7.999999999999999 0.8988433275721558 DSGSDLSHRPK ddPTM_BT-474_Trastuzumab_2h_R1 3 DSGSDLSHRPK 11 1 O95251-4;O95251;E7EUP3;D6RFZ5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 ;; 176.8 4.9641000000000005e-06 1193860000.0 858750.0 977690.0 953800.0 875130.0 924380.0 1123130.0 1080520.0 953300.0 1305420.0 1100230.0 False True 854126.5854160949 1010231.8206239152 1088086.7494217814 985921.3682708986 1042094.3137704845 1045490.66666364 1028251.1196127558 1024440.0867593157 983716.7327318087 1030012.3794457066 0.8292391455292378 0.9807958047723307 1.0563822058209893 0.9571937075178307 1.0117298923448665 1.0150272827072844 0.9982900595487031 0.9945900721218617 0.9550533103895202 1.0 19.97423024620607 4.728173221832624 4.475805603096851 0.9988310555382701 0.8191801291415611 0.7734079224591701 0.02729822113779401 0.07806318696563871 3.9347975394697428 0.006210227096267004 0.04357746064201621 53477.76172003183 -4.728173221832624 -0.179650926396709 DSGSDQDLDGAGVRAS(ph)DLEDEESAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSGSDQDLDGAGVRASDLEDEESAAR 26 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 DSGSDQDLDGAGVRAS(1)DLEDEESAAR;DSGSDQDLDGAGVRAS(1)DLEDEESAAR 270.46 1.0694999999999997e-60 1071340000.0 501330.0 558110.0 518670.0 532320.0 539940.0 554940.0 603100.0 546860.0 640290.0 577230.0 True False 498630.8949829989 576686.3539653805 591694.2276395424 599711.657420001 608698.1585248883 516578.30398824706 573925.7489342659 587669.4700988135 482499.108946431 540390.6872085345 0.9227229609724554 1.0671656037307684 1.0949378692960527 1.1097742274536548 1.1264038647098193 0.9559348749267059 1.0620570681907227 1.0874900030837031 0.892870880952537 1.0 19.043643286713596 1.2461936601161385 24.999885417896998 0.946435429715593 1.0580623945628993 0.29068671911797983 0.06644878997528585 180.95452653680513 592679.9387168923 0.04568543899358552 0.01597660154293883 17.627619200308803 -1.2461936601161385 0.11162696484730628 DSGSDTASAIIPSTTPS(ph)VDSDDESVVKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSGSDTASAIIPSTTPSVDSDDESVVKDK 29 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 DSGSDT(0.002)AS(0.002)AIIPS(0.05)T(0.048)T(0.048)PS(0.411)VDS(0.411)DDES(0.028)VVKDK 46.608 0.065652 197600000.0 81037.0 68952.0 70462.0 72739.0 61853.0 97424.0 90439.0 94026.0 111890.0 91777.0 True False 80600.7057960572 71247.02563763574 80382.43713331681 81947.74994190241 69729.61291854625 90689.30819142787 86064.12005946953 101042.69757435372 84316.2087491857 85919.71328575708 0.9380932816662272 0.8292279258507066 0.9355529023470543 0.9537712220867814 0.8115671043574738 1.0555122302353102 1.001680717593088 1.1760129743252248 0.9813371754251745 1.0 16.390701558604775 2.7156601715770896 22.94968539956345 1.0603435556485654 0.8957327588250952 0.5462796137080703 0.06706915206485721 192.47336740520987 192886.49419956614 0.021442921049972426 0.020235317836781216 519.5892672088828 -2.7156601715770896 -0.16461079682347024 DSGSDTASAIIPSTTPSVDS(ph)DDESVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSGSDTASAIIPSTTPSVDSDDESVVK 27 0 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 DSGSDTASAIIPSTTPS(0.026)VDS(0.921)DDES(0.052)VVK;DSGSDTASAIIPSTTPS(0.006)VDS(0.987)DDES(0.006)VVK 169.5 3.9882e-12 422320000.0 833540.0 628360.0 646360.0 548090.0 618390.0 908140.0 768420.0 735970.0 974060.0 777350.0 True False 829052.3132550003 649274.5827483595 737361.8697381662 617478.1378030655 697138.3010153081 845362.4193316163 731248.5889505364 790891.8185799358 734015.9647352927 727738.8574771815 1.1392167736226666 0.8921807267502103 1.0132231667474023 0.8484886184910454 0.9579511851710724 1.1616288049564854 1.004822789709927 1.0867797018860361 1.0086254941502943 1.0 19.47306131962583 DSGSDTASAIIPSTTPSVDS(ph)DDESVVKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSGSDTASAIIPSTTPSVDSDDESVVKDK 29 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 DSGSDTASAIIPSTTPSVDS(0.994)DDES(0.006)VVKDK 239.41 1.3877999999999999e-45 595420000.0 1009100.0 688960.0 620290.0 489600.0 613750.0 991820.0 882860.0 837520.0 1291000.0 847860.0 True False 1003667.1177215502 711891.6171148848 707621.4403426674 551583.3098001804 691907.424518742 923257.817893148 840152.6889472825 900019.9952403869 972850.3485137072 793748.8489105345 1.2644643442307228 0.8968726292856948 0.8914928712198047 0.6949091145861312 0.8716956572200695 1.1631611424197617 1.0584616155354933 1.1338851029210506 1.2256400117606465 1.0 19.598323069023444 2.7396519807959097 24.979189091639633 1.120324936724593 0.907865465721376 0.30706890130753806 0.1433965067278919 116.37127575616431 2663531.4421869027 0.04579314614489127 0.04615749875093345 549.1006790654955 -2.7396519807959097 -0.21245947100321705 DSGSSSVFAES(ph)PGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSGSSSVFAESPGGK 15 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 DSGSSSVFAES(1)PGGK;DSGSSSVFAES(1)PGGK;DSGSSSVFAES(1)PGGK;DSGSSSVFAES(1)PGGK 370.44 1.5390999999999994e-97 3874630000.0 4747640.0 3744020.0 3471180.0 3313580.0 3528440.0 4485590.0 4043140.0 3949760.0 5988000.0 4353970.0 True False 4722079.233752391 3868637.4423921136 3959891.9719625684 3733078.8882509926 3977765.919297619 4175511.721243087 3847557.8719053073 4244511.147674883 4512337.635089142 4076095.9069787436 1.1584808948355827 0.9491036351152982 0.9714913638765906 0.9158466761931517 0.975876429327197 1.0243899595429373 0.9439321251783716 1.0413177816566566 1.1070244022873708 1.0 21.95875656658227 1.5736019392769192 6.324335812790767 1.0597585603458315 0.986751001411114 0.13274662019897054 0.0673594431921593 0.218904355965954 17.837719162308222 0.03567193101926664 0.016620933656833883 37.46294711920811 -1.5736019392769192 -0.07300755893471744 DSGYLHLLYK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSGYLHLLYK 10 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 ; 86.275 0.013669 514910000.0 905260.0 1095980.0 1064310.0 948530.0 839860.0 1151040.0 1106820.0 921730.0 1520450.0 1141510.0 False True 900386.1807438411 1132459.0317661 1214155.5968516406 1068613.8007450271 946811.1927597743 1071471.3140567113 1053278.8881369988 990514.1730501034 1145755.4704861867 1068657.8545041196 0.8425392439207213 1.0597021553653256 1.1361499770336083 0.9999587765542481 0.8859815971680807 1.0026327037608282 0.9856090831108363 0.9268768005356807 1.0721443403584414 1.0 20.027368597667884 3.4752172606574714 24.9886716555213 0.9709963479562405 1.0259154228049026 0.02145054331341001 0.08269255394392233 157.841667278219 2071538.9885137377 0.022631866411181083 0.030860271899786303 2986.8764634886834 -3.4752172606574714 0.0549190748486621 DSHGVAQVR ddPTM_BT-474_Trastuzumab_2h_R1 6 DSHGVAQVR 9 0 P62277;J3KMX5;E9PS50 P62277 RPS13 40S ribosomal protein S13 0 ;;;;; 187.82 4.0094e-05 6425640000.0 1785470.0 2106730.0 1986530.0 1955670.0 1758450.0 1858050.0 1924000.0 457256.0 2182580.0 1455310.0 False True 1775857.2279043663 2176851.234504822 2266216.156771704 2203257.6214806396 1982378.18435028 1729607.376879234 1830928.7696062475 491378.76461892074 1644712.4040736244 1362430.8698464236 1.303447585641204 1.5977700466741493 1.6633623084503049 1.6171518645412049 1.4550302905084191 1.2695010184804456 1.3438691166859968 0.3606632640922986 1.2071896200201484 1.0 20.377751598289 1.9232044492344373 7.30279785584171 0.7962546557728573 1.48681038362913 0.5906088346873354 0.23297791451464575 0.16796224951392544 13.978536838890587 0.0988206662172933 0.061537482099241786 83.79236517051356 -1.9232044492344373 0.6905557278562727 DSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BQK9;H3BPE1;H0Y4F5;H0Y6T5 H3BQK9 MACF1 1 DS(0.238)HS(0.762)PDLQLPTPEVIPSSGSK;DS(0.189)HS(0.811)PDLQLPTPEVIPSSGSK;DS(0.027)HS(0.973)PDLQLPTPEVIPSSGSK;DS(0.036)HS(0.964)PDLQLPTPEVIPSSGSK 218.86 3.398e-25 1239184000.0 1296770.0 1235750.0 1136460.0 1120690.0 1186150.0 1487320.0 1416390.0 463668.0 1763290.0 1223140.0 True False 1289788.334404691 1276881.1917233504 1296463.6897125994 1262569.2390930643 1337199.171638137 1384505.0691746853 1347873.8045647566 498269.2606183968 1328750.8063754754 1145078.1580171606 1.1263758070786305 1.1151039628023491 1.13220541378379 1.1026052940170945 1.167779825574227 1.2090921999351738 1.177102012755846 0.43513995715472337 1.1604018442517199 1.0 20.127014643048565 DSIANATVLLDYHLNYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSIANATVLLDYHLNYLK 18 0 Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;Q06787-6;Q06787-5;Q06787-8;Q06787-3;Q06787-4;A8MQB8;Q06787-10;Q06787-11;A0A087WXI3 Q06787 FMR1 Fragile X mental retardation protein 1 0 199.01 1.6698e-15 150230000.0 170330.0 162820.0 155800.0 129750.0 160430.0 190280.0 173470.0 160690.0 235340.0 182010.0 False True 169412.96220544216 168239.3652732314 177735.28576212368 146176.33669643285 180859.8095568912 177126.39147094035 165078.5933802474 172681.50376728672 177343.61039443553 170393.9659733991 0.9942427317636935 0.9873551819287775 1.043084388269187 0.857872729596851 1.0614214448481465 1.0395109384248515 0.9688053942357235 1.0134249929615742 1.0407857425075802 1.0 17.378514721887957 DSIINDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSIINDFK 8 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 98.033 0.018168 81088000.0 195420.0 156970.0 154240.0 126440.0 139760.0 183130.0 174790.0 164680.0 247160.0 170980.0 False True 194367.8804332029 162194.6515596314 175955.65132188678 142447.29103581462 157557.60757757977 170470.6541416508 166334.73993735752 176969.25782809607 186250.72977432085 160067.91001665738 1.214283864973161 1.013286495355332 1.0992562550705889 0.8899178543718783 0.9843172660977683 1.064989566765199 1.039151069818104 1.1055886080456718 1.163573196869621 1.0 17.28832458366403 -0.1715795605781037 8.009588311626661 1.0000000031384189 1.0582655021753151 0.04289572515964635 0.08694487680855524 0.0 0.0 0.0838835516850309 0.01977154274216587 0.6736284787963338 0.1715795605781037 0.05826549903689626 DSIKLDDDSER ddPTM_BT-474_Trastuzumab_2h_R1 1 DSIKLDDDSER 11 1 Q86VP6;Q86VP6-2;F5H6I6 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 159.08 2.6516e-05 510330000.0 923530.0 898900.0 722940.0 764570.0 744310.0 1001500.0 1013600.0 842300.0 1452300.0 1005100.0 False True 918557.8170938294 928819.3431034744 824723.668092873 861364.4836068713 839093.4666289941 932268.662277417 964568.2956719808 905156.7031127346 1094400.124822974 940953.6574905976 0.9761987849045669 0.9871042380349699 0.8764763934201658 0.915416478537338 0.8917479197293823 0.9907700074875714 1.0250964943846017 0.9619567296509279 1.163075477852542 1.0 19.84376414557886 2.0385498201677077 1.1733003540051619 1.052737600469101 0.9310813113896431 0.4254924185571086 0.0582787199314608 0.4902908821995021 1.2523654439712424 0.043301973958230766 0.020725264103277435 109.28229833789658 -2.0385498201677077 -0.1216562890794578 DSINFLDHINGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSINFLDHINGK 12 0 Q96NC0;R4GNG8;R4GMX9 Q96NC0 ZMAT2 Zinc finger matrin-type protein 2 0 111.12 0.0014159 526900000.0 501900.0 506740.0 459250.0 412980.0 457860.0 647860.0 556550.0 506590.0 726300.0 586540.0 False True 499197.8261663326 523606.53456920094 523908.4081274404 465263.2256562065 516165.7570511639 603074.9630983998 529627.550272535 544394.3182118966 547313.0969213835 549106.5150378412 0.9091092756965938 0.9535609580831819 0.9541107121836566 0.84730960736123 0.9400102583295571 1.0982841153447969 0.9645260723887717 0.9914184284890157 0.9967339340048915 1.0 19.066726503105667 2.9809524763755455 24.926889367281316 1.0058258656346128 0.9179539468225792 0.5271945053490332 0.042687704172785404 615.0744208474894 804929.4658059982 0.012905616998292272 0.013896641624703918 957.0893339687314 -2.9809524763755455 -0.0878719188120336 DSIPVTELSASGPFESHDLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSIPVTELSASGPFESHDLLR 21 0 Q9Y244 Q9Y244 POMP Proteasome maturation protein 0 ; 223.18 3.6515999999999996e-25 238540000.0 174413.0 192539.0 192314.0 179228.0 164461.0 206486.0 192075.0 169999.0 232252.0 200553.0 False True 173473.9797871061 198947.54422271662 219390.13957674598 201918.24642333938 185404.13351328202 192212.10883576094 182783.59845224538 182685.18861743077 175016.60661735546 187753.53583793802 0.9239452083439988 1.0596207593898037 1.1685007081097825 1.0754431096180677 0.9874867745410456 1.0237469455790777 0.9735294605051672 0.973005316795301 0.9321614415209916 1.0 17.518480551751992 2.7840176504448193 1.4948035823728623 0.9699030919808358 1.0611546930327476 0.2550857678379881 0.06028992042693946 0.5267612500449353 2.3775692810979465 0.02569879368501372 0.025639830236254497 608.1597173915255 -2.7840176504448193 0.09125160105191177 DSIVAELDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DSIVAELDR 9 0 O14579;M0QXB4;O14579-3 O14579 COPE Coatomer subunit epsilon 0 ;;;;; 164.96 0.00014393 2390770000.0 2892082.0 3620430.0 3484580.0 3481930.0 3161165.0 3515377.0 3446758.0 3263900.0 3929908.0 3474195.0 False True 2876511.3518525157 3740933.8239538507 3975178.575487679 3922741.980989674 3563720.625057091 3272367.2622973495 3280025.147645788 3507468.7917483784 2961434.831469254 3252468.9006920136 0.8844085645954963 1.150182811327699 1.2222034081991984 1.2060813187652768 1.0956970639439023 1.0061179252478332 1.0084724090514474 1.0784019459808238 0.9105190308934737 1.0 21.63310383163791 2.8387401519180617 4.210593571223941 1.012189353476839 1.128091363360394 0.2476528950809972 0.09485303798098291 0.34388730706780357 10.616069352828374 0.030383396068032097 0.032283917953019964 689.8269414842092 -2.8387401519180617 0.11590200988355503 DSIVHQAGMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSIVHQAGMLK 11 0 O15144 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 141.73 3.7991e-05 262580000.0 539380.0 569270.0 584770.0 500830.0 474830.0 637070.0 623030.0 541700.0 791650.0 651590.0 False True 536476.0380107511 588217.8078190181 667100.533088043 564235.0266487432 535296.785962093 593030.8504014714 592891.6586942722 582124.4046968642 596558.4650665198 610004.9683457349 0.8794617517060788 0.9642836343025187 1.0935985241188197 0.9249679198169244 0.8775285673717674 0.9721738037801636 0.9719456225121049 0.9542945302159102 0.9779567315399406 1.0 19.218461467568996 0.9799634174939397 2.303668889157243 1.000100752455129 0.9571047207431647 0.05930740900573417 0.05705224436924214 1.1079303786037848 13.067270957341377 0.05540391657926356 0.015151955741624736 9.54912146245762 -0.9799634174939397 -0.04299603171196442 DSIVQLCTARPERPMAFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSIVQLCTARPERPMAFLR 19 2 P10644;P10644-2;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EMU2;K7EMZ6;K7EQK3;X6RAV4 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 0 134.4 5.5193e-06 993400000.0 273930.0 297910.0 299920.0 260960.0 252630.0 275490.0 301270.0 246020.0 344500.0 277900.0 False True 272455.19131648407 307825.7542596021 342146.1290486272 293997.50924316846 284800.93304467644 256446.02473370507 286696.4191368366 264379.26166424714 259602.59106349567 260164.18407783992 1.047243271714014 1.1831980460750204 1.31511618427177 1.1300460525927187 1.0946969278425553 0.985708411950269 1.1019826581934828 1.0162016059256875 0.9978413899809659 1.0 17.98906283922181 3.1650008597006267 2.5258117150145956 1.0284833488923557 1.1846553332901035 0.507576053631293 0.06868297902009761 0.23008121169436213 2.9954473122007306 0.021465280015070955 0.027548005045882194 1462.1800688887909 -3.1650008597006267 0.15617198439774782 DSKPIALKEEIVT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSKPIALKEEIVTPK 15 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 DSKPIALKEEIVT(1)PK 137.12 0.00088931 1386100000.0 1220600.0 819430.0 707260.0 715920.0 884740.0 1356700.0 1125400.0 1149200.0 2331100.0 1153700.0 True False 1214028.4252214076 846704.2321941042 806836.0603858765 806555.3985950697 997406.3947351731 1262914.5223282785 1070960.1025545083 1234959.1395193578 1756631.6401396624 1080069.8782677355 1.1240276667733025 0.7839346779599913 0.7470220923852782 0.7467622371699314 0.9234646894651467 1.1692896429569886 0.9915655682131994 1.1434067039255282 1.6264055460532119 1.0 20.04269322409168 2.3342818303865203 1.0533387489050114 1.25942237431112 0.8417004590208315 0.4142292907539914 0.19228341682833885 0.5013999930761261 1.0869171672875912 0.1279859099190326 0.07878166365282871 215.91451068921873 -2.3342818303865203 -0.41772191529028846 DSKPS(ph)STPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSKPSSTPR 9 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 DS(0.075)KPS(0.308)S(0.308)T(0.308)PR 72.2 0.02872 1760900000.0 3722800.0 2651900.0 2288900.0 2256300.0 2381800.0 2433100.0 2782900.0 2906200.0 4706300.0 3415800.0 True False 3702756.858441963 2740166.8883925998 2611157.2245245497 2541947.3486563493 2685108.1119653624 2264905.5239013294 2648280.4952896214 3123075.401384581 3546495.426189049 3197800.719586489 1.1579073191655203 0.8568910725453004 0.8165478256763297 0.7949048647987832 0.8396733716141563 0.7082697524047736 0.8281568263678649 0.9766322780077519 1.1090420376938468 1.0 21.60864860513355 1.5742400005443233 3.761155112953956 1.052492327848057 0.8475117755232809 0.33659197198705026 0.1124896875917618 0.20003503639839834 6.462270480239936 0.07079764303627728 0.029837244912995713 37.51802777215006 -1.5742400005443233 -0.20498055232477597 DSKPSSTPR ddPTM_BT-474_Trastuzumab_2h_R1 9 DSKPSSTPR 9 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 0 ;;;;;;;; 141.88 9.6364e-05 86640610000.0 11198320.0 11377090.0 10141290.0 9373040.0 9260680.0 9865280.0 11924240.0 11243330.0 14412030.0 11259560.0 False True 11138029.489370326 11755769.563053858 11569095.482327122 10559665.90296055 10439972.705649266 9183316.413971188 11347418.956179619 12082364.377072908 10860378.317807917 10540965.241005698 1.0566422746601962 1.1152460229469703 1.0975366314008765 1.0017740938829875 0.9904190429389181 0.8712026084904365 1.0765066288271887 1.1462294107631597 1.0303020709678143 1.0 23.32950364548003 3.7497270241224263 23.94431861151125 1.0265867957429309 1.0923520923759775 0.18822406095252486 0.0673952761344291 904.3736880659537 1939254.7564220591 0.02032283657421113 0.03620479415594741 5619.879765058772 -3.7497270241224263 0.06576529663304664 DSLDPSFTHALR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSLDPSFTHALR 12 0 O75525-2;O75525 O75525-2 KHDRBS3 KH domain-containing, RNA-binding, signal transduction-associated protein 3 0 108.56 0.00064457 0.0 87394.0 107620.0 96338.0 99147.0 102500.0 106620.0 110310.0 101440.0 118020.0 104740.0 False True 86923.48041438615 111202.06664233611 109901.55301509294 111699.00003422894 115552.76743490198 99249.61035648333 104973.88387487798 109009.96790188277 88935.55238697749 98055.40352757448 0.8864731293461264 1.134073826039221 1.1208107769827 1.1391417098479197 1.1784436479567086 1.0121788987240568 1.0705568494790594 1.1117181101725588 0.906992875328565 1.0 16.581309514583236 1.2445195749723004 24.998115464222177 0.9534964223271274 1.0880703877209639 0.2836677118952038 0.08096662834399486 151.33817033135094 634891.1007545239 0.05542475116210377 0.019058288326463807 17.55980039773009 -1.2445195749723004 0.13457396539383648 DSLDPSFTHAMQLLTAEIEK ddPTM_BT-474_Trastuzumab_2h_R1 7 DSLDPSFTHAMQLLTAEIEK 20 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 0 ;;;;;; 283.88 6.197e-45 3398412500.0 2503292.0 2532426.0 2409238.0 2162900.0 2317235.0 3028173.0 3068925.0 2838998.0 3779999.0 2958245.0 False True 2489814.554013889 2616716.2685261564 2748437.7689279034 2436722.9182328666 2612321.1419220967 2818842.5280624973 2920469.3733180105 3050858.4468997377 2848468.895841573 2769447.271419031 0.8990294127312047 0.9448514494321398 0.9924138283086492 0.8798589319176022 0.9432644444548587 1.0178357815847336 1.0545314956733578 1.1016127580347521 1.0285333558208718 1.0 21.401166640056335 2.610465383039452 2.668074741844567 1.0588575878383075 0.9320972408679402 0.6799373226905798 0.03730098033254608 0.15210850560975359 2.112414025881215 0.013423092752772111 0.012382920320669963 407.81705399115805 -2.610465383039452 -0.1267603469703673 DSLDWTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSLDWTR 7 0 B2WTI3;B2WTI4;K7EJU9;Q6NYC1-2;Q6NYC1;Q6NYC1-3 B2WTI3 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 0 ;; 118.05 0.030229 0.0 932792.0 945530.0 893060.0 899000.0 823819.0 950810.0 975730.0 904340.0 1135370.0 982650.0 False True 927769.9515149333 977001.3944650458 1018795.0853833248 1012813.3078234536 928727.4664922301 885082.7426659903 928530.2122494293 971826.4429454729 855573.2766785502 919936.4357110092 1.008515279425659 1.062031414931328 1.1074624787482288 1.1009600973578797 1.009556128488841 0.9621129333592696 1.0093417068884527 1.056406078963878 0.9300352105493969 1.0 19.81117465402751 3.1478592672467376 6.774521000969914 1.0002382017951719 1.071672713282165 0.45788325229064264 0.03984110261797951 0.22043453137328048 13.80331864140572 0.012140821402158757 0.014589083032258532 1405.5919694542974 -3.1478592672467376 0.0714345114869932 DSLGAYASQDANEQGQDLGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLGAYASQDANEQGQDLGKR 21 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 261.17 2.0066999999999996e-36 646680000.0 308740.0 282080.0 245170.0 277900.0 227800.0 314200.0 311510.0 270900.0 398480.0 320780.0 False True 307077.7781442389 291468.86227903905 279687.8049441583 313082.111506271 256808.9797236164 292480.0935472433 296441.0712162379 291115.93360232736 300279.94335843716 300307.5457664251 1.0225443298820058 0.9705678941072609 0.9313379196994785 1.0425382775755552 0.855153269852762 0.973935212985724 0.987124950389377 0.9693926699689164 0.9999080861990415 1.0 18.19608120009122 1.3583875957904827 1.4415838180764864 1.0016427164817987 0.9653014459508936 0.05735707478842045 0.04809182155316706 1.1528605742282623 4.488862031714395 0.04226057786380262 0.013374200393425188 22.823781225339378 -1.3583875957904827 -0.03634127053090508 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 DSLGDFIEHYAQLGPS(0.5)S(0.5)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.563)S(0.437)PEQLAAGAEEGGGPR 141.49 4.0144e-10 1983877000.0 82469.0 75600.0 75020.0 75525.0 88250.0 88839.0 88763.0 81697.0 101083.0 104489.0 True False 82024.99606716733 78116.30029883503 85582.16391447053 85086.45725624738 99488.11440126921 82697.7690345117 84469.19458241129 87793.64498896025 76172.44909280496 97820.4225624665 0.8385262905073584 0.7985684200960312 0.8748905563132195 0.8698230392729348 1.0170485037287358 0.8454039235181414 0.8635128776761383 0.8974981163355401 0.7786967904801526 1.0 16.57784807636028 -2.5567272483123498 2.2350669024987675 3.293426672759755 0.8693515185367725 0.30276549162831123 0.06117502530732497 3615894.7754131556 355787.8799572679 42180424.529342614 0.01618602273967487 0.0027750623909376664 2.5567272483123498 -2.4240751542229826 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPR ddPTM_BT-474_Trastuzumab_2h_R1 7 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 DSLGDFIEHYAQLGPS(0.2)S(0.8)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.167)S(0.833)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.039)S(0.961)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.043)S(0.957)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.182)S(0.818)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.205)S(0.795)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.111)S(0.889)PEQLAAGAEEGGGPR 306.46 1.1437e-90 9630293000.0 654180.0 690887.0 662795.0 652244.0 639634.0 753733.0 749830.0 700380.0 890368.0 816493.0 True False 650657.9675662315 713882.7561449896 756110.7748825852 734818.0235239164 721087.5984922554 701629.2118066336 713557.8582712325 752645.9120575781 670948.7367199492 764383.7177051747 0.8512190310903409 0.9339324472899573 0.989176976653262 0.9613208739322442 0.9433581351746968 0.9179018280413638 0.9335074017712842 0.984644092520919 0.8777642971441947 1.0 19.543937521935614 1.0120447018794847 0.007387625913532012 1.9101449728232631 2.0299258926035306e-07 0.15273886013379512 0.04197456736658298 5698.708287454736 28.743834073522482 3748.9551787039904 3680.1350287913933 10.281221171679226 -1.0120447018794847 -1.910144769830674 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 0 ;; 276.1 1.7769e-73 1177820000.0 378200.0 390140.0 392180.0 385250.0 375030.0 390130.0 390220.0 390700.0 476700.0 400430.0 False True 376163.8132219699 403125.5740553898 447395.5351103318 434022.61049942725 422787.84752303665 363161.2313672371 371343.56781483884 419856.01793440036 359223.6724527382 374874.2145746292 1.0034400836259276 1.0753622372048648 1.1934550783067135 1.1577819802621365 1.1278125597482749 0.968754897637644 0.9905817828420218 1.119991724186237 0.9582512173059177 1.0 18.516047068842 2.7556213712390716 24.48207645625412 1.0221439353848443 1.1166752919110594 0.3913517901957497 0.06342814885015005 767.6055477247796 1101507.4224576026 0.02078539378083782 0.02198540516186343 569.6674054697918 -2.7556213712390716 0.09453135652621514 DSLHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSLHEK 6 0 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 83.801 0.056575 208240000.0 404040.0 396870.0 393440.0 344980.0 361770.0 320490.0 402240.0 403480.0 534970.0 465490.0 False True 401864.6935330643 410079.57803701854 448832.9321582153 388654.43262840324 407839.2651212146 298335.28065231064 382782.11449397966 433589.7264299257 403133.81173073495 435782.02967396105 0.9221690344453334 0.9410199368336223 1.0299482346576305 0.8918551160064648 0.9358790343565742 0.6845974830020322 0.8783797596710577 0.9949692665260301 0.9250813119401631 1.0 18.733247179759836 1.7443051124862574 12.750419781423217 0.9694648725711206 0.8974952520891102 0.1446407764160258 0.08414195995086171 0.19516236051131072 245.82243281108566 0.04230788163205626 0.023230982806188526 55.50155007513905 -1.7443051124862574 -0.07196962048201039 DSLHQPQYVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLHQPQYVEK 11 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 ; 121.04 0.00041988 924870000.0 1106860.0 1249010.0 1266780.0 1143640.0 1117310.0 1460970.0 1488280.0 1382790.0 1654780.0 1418850.0 False True 1100900.7887437078 1290582.5428075108 1445131.6129508538 1288424.7067399505 1259592.8056847856 1359976.5826534578 1416286.2106182892 1485980.8114653428 1246981.6419159689 1328297.7782614 0.8288057141710117 0.9716063400307313 1.0879575623791051 0.9699818277392294 0.948275926000161 1.0238491736645994 1.066241496294646 1.11871060524571 0.9387816966374322 1.0 20.341147176146894 2.559472925747966 4.413982061821721 1.0497598321499173 0.9697663103014292 0.1537114998093776 0.07360298534341969 0.3781504234388772 13.311576476792737 0.025400102030569152 0.02345977766110184 362.637678428409 -2.559472925747966 -0.07999352184848807 DSLIIIDELGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DSLIIIDELGR 11 0 A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;P43246;P43246-2;A0A2R8Y713 A0A2R8YFH0 MSH2 DNA mismatch repair protein Msh2 0 ;;; 170.47 3.6461e-05 121165000.0 183096.0 218839.0 194153.0 185965.0 199630.0 223014.0 212368.0 190319.0 244840.0 213990.0 False True 182110.23147987804 226122.9238240308 221488.05479187134 209508.1499325791 225051.697200288 207597.5670984881 202094.94851545728 204521.5702002998 184502.46268791353 200332.97499394364 0.9090377232474259 1.128735415778989 1.105599588877304 1.0457996240454814 1.1233881851307388 1.036262587847877 1.0087952246581817 1.0209081665486313 0.9209789985572335 1.0 17.61204038407846 1.893879703629985 1.3728844644284328 0.9703731370915307 1.066763543879476 0.24476546012661637 0.06292245153437936 0.5565557084439801 1.9524523125871145 0.04502908732392661 0.019538091439059675 78.32126685818564 -1.893879703629985 0.0963904067879453 DSLITPHVS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;P0DJD0;A0A1W2PNU4;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5;RGPD6;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 DSLITPHVS(1)R;DSLITPHVS(1)R 120.87 0.00034139999999999995 470400000.0 408400.0 427280.0 350230.0 354740.0 408410.0 382480.0 378150.0 343670.0 498000.0 405210.0 True False 406201.21977750584 441501.7565037859 399539.3397462677 399650.0476276887 460418.59266427683 356040.0578610746 359857.43982671615 369316.40052090003 375274.5728581149 379349.1508822653 1.0707845762480022 1.163840107397025 1.0532232346297479 1.0535150710057184 1.2137066646741281 0.9385550410038352 0.9486180184924189 0.9735527275122885 0.9892590295386875 1.0 18.533166782900345 2.716933427666047 24.99947710600855 0.9670423966852331 1.107543750144553 0.6700091064901297 0.04943082261346487 469.9609269764123 543240.4412496291 0.015522684919506206 0.014646994732667553 521.1148240915275 -2.716933427666047 0.14050135345932002 DSLITPHVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;P0DJD0;A0A1W2PNU4;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5;RGPD6;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 0 69.672 0.059037 0.0 72759.0 109980.0 108920.0 113580.0 107330.0 116310.0 109700.0 114950.0 121890.0 119520.0 False True 72367.27362828476 113640.61781568606 124254.98925038849 127959.21635438036 120997.8393052492 108269.76346428996 104393.39190530432 123528.15270427278 91851.8427423206 111892.13127378002 0.6467592743516074 1.015626537112139 1.1104890740382698 1.1435944145284629 1.0813793421200384 0.9676262506732778 0.9329824243840023 1.1039932057601218 0.8208963552367734 1.0 16.771749057923124 4.7371035958139425 5.903045671397787 1.0298778827775783 0.6360546527629761 0.5928327044978534 0.09242152145062539 0.08774126312576341 14.257661462875397 0.021986376578382528 0.13936392468032435 54588.80607046457 -4.7371035958139425 -0.3938232300146022 DSLLDGHFVLATLSDTDS(ph)HSQDLGS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 2 DSLLDGHFVLAT(0.045)LS(0.018)DT(0.023)DS(0.469)HS(0.469)QDLGS(0.976)PER 74.328 0.0044356000000000005 47094000.0 59248.0 59039.0 48302.0 50999.0 53221.0 63786.0 54228.0 50371.0 70685.0 61099.0 True False 58929.015351071626 61004.07742517082 55102.50175148971 57455.4681709547 59998.378884418715 59376.62395609316 51604.78446892288 54129.93979875528 53265.62888047369 57199.60951051437 1.030234574245465 1.0665121308906333 0.9633370266515688 1.00447308404078 1.0489298685402717 1.038059952929899 0.9021877056597204 0.9463340792353692 0.9312236453411883 1.0 15.803717677616621 2.2486474662746483 24.999357072970717 0.9397260941636374 1.0244496472922076 0.564073945847186 0.03446606276511376 140.9601567465867 349357.23841833405 0.011961488340600018 0.009899220365123165 177.2749886637562 -2.2486474662746483 0.08472355312857016 DSLLDGHFVLATLSDTDSHS(ph)QDLGS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 3 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 2 DSLLDGHFVLAT(0.261)LS(0.067)DT(0.067)DS(0.281)HS(0.326)QDLGS(0.999)PER;DSLLDGHFVLATLSDT(0.001)DS(0.021)HS(0.979)QDLGS(1)PER;DSLLDGHFVLAT(0.211)LS(0.244)DT(0.197)DS(0.208)HS(0.24)QDLGS(0.9)PER 118.3 9.8977e-05 168321000.0 99610.0 103759.0 97327.0 100542.0 100602.0 103455.0 100127.0 87981.0 110308.0 114517.0 True False 99073.71082771133 107212.55559135992 111029.79561855072 113270.60689119644 113413.06838522943 96303.39935687483 95283.47448771553 94546.58897846563 83124.07145147187 107208.4270170638 0.9241224182119777 1.0000385097926627 1.0356442931569054 1.0565457403191612 1.0578745677070522 0.8982819917836004 0.888768515114486 0.8818951234441407 0.7753501638284596 1.0 16.710058786369586 2.649843149318371 5.48418474839409 0.8799267285475592 1.0172337133293867 0.508671100579454 0.061718490383420095 0.17598743096267688 8.466369453519496 0.01993806528654543 0.018783856755513455 446.52229612174165 -2.649843149318371 0.13730698478182757 DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 11 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLAT(0.001)LS(0.001)DT(0.002)DS(0.007)HS(0.032)QDLGS(0.957)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER 357.56 2.3072999999999995e-111 8372090000.0 2523329.1 2846699.0 2829523.0 2762076.0 2867813.0 3162479.0 3031595.8 2523092.0 3414583.0 3094096.0 True False 2509743.776493816 2941449.6553491163 3227895.243745198 3111754.5383979636 3233011.986690623 2943864.2704048157 2884945.9293334056 2711377.9370415774 2573104.7727180324 2896628.1442911387 0.8664363016150971 1.0154736848588297 1.1143630051744617 1.0742678671167405 1.1161294531583046 1.0163072799685293 0.9959669607641017 0.9360462586077317 0.8883103541575652 1.0 21.465943059310234 1.99568969711157 2.26500129781059 0.9346592427490313 1.0427823009740824 0.2485711691368423 0.0709292603644893 0.4030841059232832 3.8584720006059428 0.04041541500056037 0.021712829374336568 99.01242495058374 -1.99568969711157 0.10812305822505108 DSLLQDGEFSMDLR ddPTM_BT-474_Trastuzumab_2h_R1 31 DSLLQDGEFSMDLR 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 354.97 1.0390999999999993e-81 26162198900.0 4977372.3 5773607.5 5190045.0 5482889.9 4946271.199999999 5688893.800000001 5661900.300000001 5283942.199999999 6540867.8 5783711.199999999 False True 4950574.6805748455 5965778.53541806 5920758.223320154 6177023.199166631 5576149.5184737 5295633.961821562 5388012.551929442 5678256.798278825 4928958.573828113 5414589.799531716 0.9143028121914238 1.1017969516239279 1.0934823213814302 1.1408109252709882 1.0298378501278078 0.9780304986870026 0.9950915492057085 1.0486956553513829 0.9103106156359984 1.0 22.36842061508068 3.0028708335817886 24.92867784191791 0.9959314829236716 1.069819195896831 0.22987397351268657 0.0642342478535761 130.2421556767428 1130922.0089794379 0.018480692653722316 0.02197149849584145 1006.632235119353 -3.0028708335817886 0.07388771297315944 DSLPLPVRSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLPLPVRSR 10 1 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 0 ; 61.78 0.081505 821340000.0 92992.0 129600.0 131199.0 143195.0 122114.0 114962.0 97821.0 113353.0 134427.0 119182.0 False True 92491.34140438249 133913.65765514545 149670.67879784893 161323.4723178858 137664.4940736159 107014.94753143907 93089.02451749094 121811.97645487111 101299.26707951372 111575.7027231563 0.8289559388559149 1.200204474511933 1.3414271668914746 1.4458656175185793 1.2338214388413185 0.9591241185992486 0.8343126885650467 1.0917428569292837 0.9078971909400324 1.0 16.767663367399155 2.7387610512924714 22.971496544496066 0.9644475745325087 1.2299067552232166 0.37635163531152493 0.16073692236685477 6.387146459578328 732037.4070100322 0.05283767352671939 0.05289362956816237 547.9753860536362 -2.7387610512924714 0.26545918069070784 DSLRDESQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLRDESQR 9 1 Q96MW1;Q86WV7 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 0 ; 120.63 0.00058054 972000000.0 178896.0 378040.0 390060.0 491890.0 396780.0 207430.0 354980.0 242370.0 263024.0 366900.0 False True 177932.8438132141 390622.8328699941 444977.0575377016 554163.2235653822 447307.58110068756 193090.8523376978 337808.26124471176 260456.88012992244 198205.2595410299 343484.1278811067 0.5180234816404781 1.137236923521555 1.2954806974129693 1.613359042188988 1.3022656501191177 0.5621536387397036 0.9834756072386566 0.7582792303581398 0.5770434306927757 1.0 18.38988390926979 2.748435696043222 24.83556516264869 0.7785426201403756 1.2025096806116706 0.31725406258941047 0.2896638831377803 761.9915139968487 1916387.8524786122 0.09204768955272716 0.09655673482412905 560.319447336681 -2.748435696043222 0.42396706047129507 DSLS(ph)PVLHPSDLILTR ddPTM_BT-474_Trastuzumab_2h_R1 5 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 DS(0.003)LS(0.997)PVLHPSDLILTR;DS(0.028)LS(0.972)PVLHPSDLILTR;DSLS(1)PVLHPSDLILTR;DSLS(1)PVLHPSDLILTR;DS(0.159)LS(0.841)PVLHPSDLILTR 243.87 3.2541e-20 1891940000.0 1051220.0 1528700.0 1502400.0 1599780.0 1560380.0 1635650.0 1568280.0 1397290.0 1583830.0 1499790.0 True False 1045560.3483215217 1579581.8553813354 1713924.8609051001 1802311.9839708633 1759085.1439031458 1522581.3654059456 1492416.3049886094 1501562.8750948529 1193516.3187346754 1404072.1181651796 0.7446628522812947 1.125000514535898 1.2206815011360181 1.2836320589615422 1.252845292734601 1.0844039602436035 1.0629199780271092 1.0694342944841557 0.8500391848065074 1.0 20.421185608846397 1.5031544984555378 2.2831183595261226 0.9284795823478402 1.1289986482837686 0.1830507620969729 0.14690922399292786 0.4527846288142079 4.739271908804656 0.1217516847784044 0.041087665350210974 31.853304882622837 -1.5031544984555378 0.2005190659359284 DSLSPGQERPYSTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSLSPGQERPYSTVR 15 1 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 0 ; 216.0 2.0656e-12 826980000.0 169728.0 164038.0 182566.0 177596.0 153952.0 174487.0 174389.0 137040.0 211830.0 169233.0 False True 168814.20330655357 169497.90566693482 208269.70590788097 200079.63539067178 173556.8746550054 162425.12438821723 165953.13783932643 147266.62067501992 159627.33487657533 158432.40505233913 1.065528250049507 1.0698436699925127 1.3145650717040984 1.2628706565716417 1.0954632330278002 1.0252014058270407 1.0474696624374462 0.9295233549372016 1.0075422059258738 1.0 17.27350792239792 2.82863993055599 2.492739504225116 0.9914379294645803 1.1796277821717964 0.5336311147655444 0.07706207337765351 0.23889257905343156 2.910385110932407 0.028390874457273542 0.02990089523218401 673.9690146633209 -2.82863993055599 0.1881898527072161 DSMTVSEVTASISSPS(ph)EEDASEMPEFLDK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSMTVSEVTASISSPSEEDASEMPEFLDK 29 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 DSMTVSEVTASISSPS(0.788)EEDAS(0.212)EMPEFLDK;DSMTVSEVTASISS(0.001)PS(0.993)EEDAS(0.005)EMPEFLDK;DSMTVSEVTASISSPS(0.998)EEDAS(0.002)EMPEFLDK;DSMTVSEVTASISSPS(0.947)EEDAS(0.052)EMPEFLDK 296.43 5.046699999999998e-81 348008000.0 767080.0 710480.0 639300.0 635550.0 655040.0 798780.0 821040.0 749140.0 1038510.0 836910.0 True False 762950.1265105993 734127.8973057711 729307.8831047851 716010.5648355896 738455.4612737395 743562.2187258648 781323.1585226158 805044.6308558414 782583.1258210469 783497.6872853005 0.9737745738013659 0.9369879569771442 0.9308360381148352 0.9138642990976229 0.94251134784121 0.9490292451305045 0.9972245881538986 1.027500966397486 0.9988327196377281 1.0 19.579569490619093 2.225797392219555 3.069334325283154 1.012194390427919 0.9380953511124233 0.8019723700386591 0.015844028397493923 0.10077310273526076 1.9672605475307012 0.006610454301595193 0.0048175529679658205 168.18892402648945 -2.225797392219555 -0.07409903931549566 DSNELS(ph)DS(ph)AGEEDSADLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSNELSDSAGEEDSADLKR 19 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 2 DSNELS(1)DS(1)AGEEDSADLKR 157.24 2.7854e-08 397720000.0 868860.0 712170.0 401700.0 571920.0 615140.0 908560.0 702940.0 821780.0 1246600.0 810370.0 True False 864182.1542994203 735874.1479341441 458255.8683610084 644325.0133597215 693474.4327795665 845753.3857201879 668936.1067084278 883105.3965142857 939392.133584189 758651.4928073384 1.139102951081758 0.9699765371990395 0.6040400272136336 0.8493030323784647 0.9140882728819414 1.1148114697442102 0.8817436109340208 1.164046212110404 1.2382393529709304 1.0 19.53307777105789 2.2751258207120086 1.129678832862124 1.132000468871538 0.8832359974608299 0.25346113989937313 0.15369138808420107 0.6617430415400706 1.6351829819684354 0.10599462665743108 0.061951230136248606 188.4194885980626 -2.2751258207120086 -0.248764471410708 DSNPDEIEIDFETLKPTTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSNPDEIEIDFETLKPTTLR 20 1 Q15059 Q15059 BRD3 Bromodomain-containing protein 3 0 ; 235.03 1.4318e-29 136499000.0 132814.0 139172.0 117067.0 113752.0 114036.0 146183.0 150976.0 129148.0 212988.0 161521.0 False True 132098.9441810225 143804.2558887494 133549.0160353949 128152.99153674458 128557.8086556729 136077.71328776772 143672.71409567195 138785.67956025587 160499.96129298056 151212.59149491473 0.8735975150949317 0.951007151369306 0.8831871388163209 0.8475021178448249 0.8501792567981767 0.8999099343677607 0.9501372384091682 0.9178182728580723 1.0614192886071803 1.0 17.20621875242781 1.4989928837292064 1.5371629686878014 1.0276218074368708 0.8872869382284447 0.6524743266837886 0.038293822079897386 0.23056336656463614 1.0451960298034604 0.03405103898019825 0.011306108906595655 31.549529264633243 -1.4989928837292064 -0.14033486920842608 DSNPEEIEIDFETLKPSTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSNPEEIEIDFETLKPSTLR 20 1 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2;A0A0G2JHN8;A0A140T9I1 H0Y6K2 BRD2 Bromodomain-containing protein 2 0 142.23 1.6582e-07 91177000.0 32140.0 37549.0 34580.0 33072.0 27315.0 33526.0 36194.0 37236.0 48847.0 37492.0 False True 31966.961811089688 38798.79576615016 39448.56342525181 37258.911809051446 30793.403341310728 31208.426531715064 34443.157945492996 40014.73940057678 36809.31136626576 35099.22846148391 0.9107596722864889 1.10540309479241 1.123915400833971 1.0615307926194864 0.8773242230980043 0.8891485055280229 0.9813081214388844 1.1400461250732876 1.0487213816297534 1.0 15.099151697628438 -0.6373512347322285 19.0651230053842 0.9999995392964461 1.0220519844023213 0.0 0.09282861314504508 0.0 0.0 0.0974237653419362 0.022963001707336683 0.2304882366058238 0.6373512347322285 0.022052445105875118 DSNQFHATCLDTFPPISYLNAISWR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSNQFHATCLDTFPPISYLNAISWR 25 0 P53602 P53602 MVD Diphosphomevalonate decarboxylase 0 ; 190.19 9.0148e-18 265780000.0 102514.0 131874.0 159837.0 158657.0 142336.0 163824.0 180711.0 158594.0 147647.0 164705.0 False True 101962.07601437614 136263.34637048354 182340.6602718904 178742.95993253108 160461.6459084315 152499.23248021517 171969.31854694127 170429.08960401436 111261.37521843797 154193.38588895518 0.6612610224916247 0.8837171943848212 1.1825452772870941 1.1592128864804596 1.0406519383651807 0.989012801042192 1.115283366763784 1.105294423761805 0.7215703486695897 1.0 17.234381356746464 4.543041407853305 3.564228846976288 1.0521282701415424 0.6740438218224286 0.4668460209834342 0.12404578921920721 0.20117663240475564 4.662990954730096 0.029901611248191975 0.1489012991847748 34917.36058859012 -4.543041407853305 -0.3780844483191138 DSNYHLLMSVQESLER ddPTM_BT-474_Trastuzumab_2h_R1 2 DSNYHLLMSVQESLER 16 0 P00367;P00367-2;P00367-3 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial 0 ; 167.82 6.192e-09 204130000.0 151963.0 186375.0 189930.0 178564.0 205806.0 317180.0 172256.0 138832.0 206399.0 212294.0 False True 151144.84809267658 192578.37920893342 216670.49309884547 201170.18409142084 232014.17419226794 295254.0931614088 163923.31919817763 149192.3488146116 155534.7320549037 198745.21516596267 0.7604955317614198 0.9689711475474787 1.0901922489953495 1.0122013952558968 1.1673950187858557 1.4855909507801541 0.8247912738995656 0.7506713995103137 0.7825835299985665 1.0 17.600560602056785 2.049064905067695 24.99992831942103 0.8094654836158099 1.0834868966968714 0.29121991379792556 0.18214688925936234 129.10338532174495 65781.14161904443 0.07084719541719704 0.052324110977123285 111.96051953354653 -2.049064905067695 0.2740214130810614 DSPAFPDS(ph)PWR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSPAFPDSPWR 11 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 DSPAFPDS(1)PWR;DSPAFPDS(1)PWR 212.1 7.429600000000002e-09 231770000.0 277680.0 288540.0 251160.0 228993.0 230080.0 387030.0 361180.0 312520.0 507980.0 442810.0 True False 276185.00173314806 298143.8794738864 286521.14487814496 257983.49032081856 259379.32420899774 360275.5270706228 343708.3435584115 335841.8293444048 382795.13558326353 414549.4866912854 0.6662292696042409 0.719199731384335 0.6911627057242432 0.6223225419476605 0.6256896523482063 0.869077248041365 0.8291129396919765 0.8101368838372387 0.9234003366848472 1.0 18.661184807623723 2.7319811052072467 24.965105551405692 0.8646774453550725 0.6670275919071166 0.7844356180816714 0.057473368559349904 259.85174929344106 985971.4681925097 0.018488726671996573 0.017806866338643288 539.4871506082179 -2.7319811052072467 -0.19764985344795594 DSPDLLLLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPDLLLLLR 10 0 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 75.378 0.091134 13287000.0 12763.0 15224.0 11558.0 15203.0 14964.0 14624.0 12648.0 11940.0 14908.0 14540.0 False True 12694.285426102602 15730.72163689766 13185.265936063068 17127.698241201295 16869.576701423168 13613.077301193149 12036.167919947926 12831.023430091489 11234.123156965425 13612.044751679708 0.9325774090285843 1.1556472171424876 0.9686469723394072 1.258275193305382 1.239312462541051 1.0000758555773417 0.8842292351751693 0.942622777412494 0.8253075391615318 1.0 13.732596179053479 2.491761665567185 6.191742424917107 0.9139952980224061 1.114704716673551 0.4440062156607655 0.1045696871065219 0.1477027495739844 22.987067823647767 0.03518585837141511 0.031427975652276764 310.2856318833037 -2.491761665567185 0.200709418651145 DSPDS(ph)PEPPNKKPLVEMDETPQVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 DSPDSPEPPNKKPLVEMDETPQVEK 25 2 Q9NVM9-2;Q9NVM9;H0YH12 Q9NVM9-2 ASUN Protein asunder homolog 1 DSPDS(1)PEPPNKKPLVEMDETPQVEK;DS(0.001)PDS(0.999)PEPPNKKPLVEMDETPQVEK;DS(0.021)PDS(0.979)PEPPNKKPLVEMDETPQVEK 140.74 2.0108e-07 1165280000.0 1986640.0 1045930.0 959640.0 777430.0 806480.0 1446940.0 1318380.0 1338780.0 2073180.0 1299540.0 True False 1975944.150976452 1080743.1477719638 1094748.97065959 875852.5582883073 909180.447618534 1346916.443530388 1254604.9226993157 1438686.5617870921 1562272.5681887297 1216602.2446078316 1.6241496838709124 0.888329075967091 0.8998413207863836 0.7199169343721176 0.747311170637866 1.1071132323650799 1.031236731857037 1.182544720892611 1.2841276391794954 1.0 20.214426140393893 2.1370923149059315 1.9913696988328182 1.165858410853156 0.9580149945623483 0.0659263094257273 0.2477990253744763 0.7734811229913583 6.001775531292311 0.1318351389054867 0.07789296124494652 137.1173195777093 -2.1370923149059315 -0.20784341629080771 DSPFYQHYDLDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSPFYQHYDLDLK 13 0 O75582-3;O75582;O75582-2 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 0 ; 157.75 4.7819e-05 875980000.0 594740.0 624270.0 565310.0 523900.0 533560.0 687930.0 700350.0 628860.0 920600.0 727480.0 False True 591537.9859218253 645048.4495708157 644900.7342373946 590225.6862833233 601505.70334211 640375.0183130327 666471.3949031899 675788.726486377 693730.465407993 681051.6035730374 0.868565587127918 0.9471359382852393 0.9469190452735409 0.8666387145802033 0.8832013612278402 0.9402738573015599 0.9785916241979982 0.9922724253800306 1.0186165949370616 1.0 19.37740459043973 2.2646850283182434 2.092496775886004 1.001161875309413 0.9056243941576484 0.7313923329801985 0.02724453458399656 0.18163385825531483 1.61888246433788 0.01335757431322688 0.009105262060981978 183.94374672265644 -2.2646850283182434 -0.09553748115176453 DSPLFDFIESCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPLFDFIESCLR 13 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 93.258 0.013253 113750000.0 43233.0 49698.0 50338.0 51745.0 61396.0 47613.0 55517.0 41139.0 63814.0 59630.0 False True 43000.23833163783 51352.16788692461 57425.152854260436 58295.911694465634 69214.41667739754 44321.625378946206 52831.4306144647 44209.001079609196 48087.894763790675 55824.36234818854 0.7702772861682882 0.9198881227989693 1.0286754821503814 1.044273669099192 1.2398604080005853 0.7939477230837445 0.9463866382376876 0.7919302472971955 0.86141413427808 1.0 15.768607246558055 DSPNVEAAHLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPNVEAAHLAR 12 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 0 145.71 0.00033679 0.0 179830.0 216990.0 273400.0 240850.0 200320.0 210530.0 213520.0 168100.0 223150.0 212720.0 False True 178861.81526099116 224212.38097677528 311892.3435645994 271341.5853050932 225829.5646103372 195976.55663431276 203191.22187438983 180644.475594504 168157.67255680406 199144.02748124543 0.8981530479383101 1.1258805188013519 1.5661646874846504 1.362539407970179 1.134001192336059 0.984094572722092 1.0203229514052363 0.9071046612809734 0.844402288552894 1.0 17.603452686991552 2.827196234583427 2.6758999168057374 0.9426089838538746 1.252905904907185 0.4001701093459322 0.16586506241914659 0.2946115715564409 4.1264792427752575 0.059490952268222735 0.06264747235330848 671.7323044740338 -2.827196234583427 0.3102969210533103 DSPPLLDAPAS(ph)PPQASR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPPLLDAPASPPQASR 17 0 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 DSPPLLDAPAS(0.85)PPQAS(0.15)R 113.86 0.00041057 161410000.0 83450.0 89355.0 88403.0 87507.0 89701.0 97476.0 92513.0 84749.0 116960.0 96803.0 True False 83000.71447216664 92329.12715876193 100849.37398734932 98585.37722770506 101123.89065051856 90737.71355382258 88037.79275602012 91073.40072670212 88136.77518370518 90624.94966278206 0.9158704615121398 1.0188047276420142 1.112821296592303 1.087839249506278 1.1158504476615252 1.0012442919026174 0.9714520458616659 1.0049484282814916 0.9725442663600317 1.0 16.46762066822618 2.503505027719504 23.66839156674461 0.9886017180531704 1.0545059427815417 0.23478648102555566 0.05451458549869847 563.1972739457292 505233.1121041951 0.018720310717113258 0.017584127244185673 318.79024810386437 -2.503505027719504 0.06590422472837132 DSPRPGKPDER ddPTM_BT-474_Trastuzumab_2h_R1 2 DSPRPGKPDER 11 2 A0A0A0MR03;Q9Y5B0;K7EJD2;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 A0A0A0MR03 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 0 ; 86.31299999999997 0.0081912 269380000.0 755350.0 704320.0 637890.0 559560.0 582010.0 804950.0 815740.0 727090.0 991620.0 743400.0 False True 751283.2795272738 727762.8654295692 727699.3673607254 630400.23862702 656125.5236564615 749305.7011484834 776279.5397705826 781349.14788821 747248.5380272379 695955.57554324 1.0794989018384498 1.045703046292145 1.0456118076110064 0.9058052852510743 0.9427692610182936 1.07665737222322 1.1154153613391837 1.122699745997889 1.0737014894146948 1.0 19.408635692883006 2.5663690757630673 7.398580879353001 1.0932510078820419 1.0032627135949073 0.27751636270079527 0.057452254064415564 0.32359154863468154 23.5727675697102 0.019855511794573188 0.018665127378276438 368.4419530514228 -2.5663690757630673 -0.08998829428713462 DSPSAGGPVGQLEPIPIPAPAS(ph)PGTRPTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPSAGGPVGQLEPIPIPAPASPGTRPTLK 30 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 DSPSAGGPVGQLEPIPIPAPAS(0.844)PGT(0.143)RPT(0.012)LK 157.42 1.1624e-09 324270000.0 180910.0 177740.0 174210.0 192360.0 173730.0 187920.0 148260.0 165020.0 217140.0 224350.0 True False 179936.00066099034 183655.968453901 198737.25373953514 216712.7562768849 195853.48572161497 174929.53271609786 141088.09739179947 177334.6303545811 163628.75652693 210031.79092430163 0.8567084052806166 0.8744198563735199 0.9462246303997036 1.031809305263655 0.9324944802865738 0.8328716902630464 0.6717463902531288 0.8443228026298883 0.7790666156148908 1.0 17.680248188697593 2.6794571498984974 4.713939382911949 0.803839738825786 0.9322509210159141 0.23969479875532573 0.08811495009752829 0.2557634713594575 11.876195460459 0.02838499207803522 0.027025515636107878 478.0321982949802 -2.6794571498984974 0.12841118219012815 DSPSKS(ph)SAEAQTPEDTPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPSKSSAEAQTPEDTPNK 19 1 A0A5F9UY30;A0A5H1ZRP2;O43493-4;O43493;O43493-5;O43493-3;O43493-7 A0A5F9UY30 TGOLN2 Trans-Golgi network integral membrane protein 2 1 DS(0.005)PS(0.138)KS(0.523)S(0.333)AEAQTPEDTPNK 153.87 2.5126e-08 361930000.0 586210.0 468390.0 437890.0 334670.0 390930.0 661320.0 572550.0 457900.0 752540.0 544010.0 True False 583053.9104940542 483980.0780022654 499541.1057918885 377039.18768551224 440712.6182763539 615604.504979831 544853.5691465997 492070.82316908636 567086.60051937 509290.8160496071 1.1448349196959842 0.9503019939694409 0.980856300662667 0.7403219846178947 0.8653457010962998 1.2087484902140244 1.0698279882068964 0.9661882909766756 1.1134828719631444 1.0 18.95813017604463 2.764903278876178 24.99957535191235 1.0608309050714304 0.9286923886994735 0.26151389688542637 0.11260208330952635 1147.0848395894552 1088598.587726089 0.03610311872556158 0.03828357395671008 581.9735928026068 -2.764903278876178 -0.13213851637195695 DSPSKSS(ph)AEAQTPEDTPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSPSKSSAEAQTPEDTPNK 19 1 A0A5F9UY30;A0A5H1ZRP2;O43493-4;O43493;O43493-5;O43493-3;O43493-7 A0A5F9UY30 TGOLN2 Trans-Golgi network integral membrane protein 2 1 DS(0.001)PS(0.082)KS(0.236)S(0.682)AEAQTPEDTPNK 189.8 8.000499999999997e-15 583680000.0 659010.0 487100.0 524660.0 368980.0 427170.0 716730.0 613040.0 494340.0 801070.0 561040.0 True False 655461.9633828948 503312.8290418324 598527.5675735284 415692.8301676283 481567.5674650446 667184.1421009417 583384.9131597786 531230.1610076576 603657.0322880535 525233.9468694901 1.2479428781966442 0.9582640879206069 1.1395447136288208 0.7914431895448667 0.9168629909306002 1.2702608924604095 1.1107144095252812 1.0114162730225384 1.14931077072604 1.0 19.00260063780691 2.7817769954064477 24.99827214126812 1.1010959256269177 1.0028570095774987 0.11299434654307139 0.1349543528292955 1100.9640704353667 636844.2516924356 0.04145826673696478 0.04397283593404556 605.0301198433469 -2.7817769954064477 -0.09823891604941903 DSPSVWAAVPGK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSPSVWAAVPGK 12 0 P07737;CON__P02584;I3L3D5 P07737 PFN1 Profilin-1 0 ;;; 186.78 2.633e-05 1539610000.0 2452960.0 2499910.0 2217270.0 2091630.0 1829000.0 2467500.0 2552840.0 2303740.0 3274800.0 2594860.0 False True 2439753.5359094776 2583117.993122492 2529442.343143671 2356430.143540343 2061912.3086676677 2296927.5328702177 2429349.376404162 2475656.7769546877 2467769.4200717974 2429253.8132285867 1.0043222007612849 1.06333804193536 1.0412425121531164 0.970022206287511 0.8487842223152855 0.9455280137308907 1.0000393384894797 1.019101735468485 1.015854912579934 1.0 21.212081802795762 3.7377447075189427 23.14472459074338 0.9707737224198231 1.0390046366033125 0.27420340709181035 0.04837138127997797 36.88121418264554 1046237.8499038874 0.014359699306925761 0.023795682735522385 5466.945035361766 -3.7377447075189427 0.06823091418348948 DSQDAGGFGPEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSQDAGGFGPEDR 13 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 225.97 2.6896e-11 1467740000.0 593550.0 685880.0 577700.0 579070.0 568470.0 636150.0 654880.0 566600.0 757840.0 614950.0 False True 590354.392749605 708709.1011767848 659035.1385415837 652380.2026266151 640861.2849143288 592174.4478360245 623200.9525154565 608882.5691365023 571080.4865357315 575703.3645148171 1.0254489189013778 1.2310317167836258 1.1447477627597256 1.1331881014390432 1.1131796762286157 1.0286103648796434 1.0825035789753785 1.0576324660698266 0.9919700348060643 1.0 19.134966118087227 2.347942674209464 0.6464720985326446 1.0051476445172458 1.1472157795800257 0.4662273982165358 0.05227646505932805 0.6580339788733509 0.5480573847044607 0.04307776604555098 0.03225508423900262 222.81410207903124 -2.347942674209464 0.14206813506277993 DSQDASAEQS(ph)DHDDEVASLASASGGFGTK ddPTM_BT-474_Trastuzumab_2h_R1 7 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 DSQDASAEQS(1)DHDDEVASLASASGGFGTK;DSQDASAEQS(1)DHDDEVASLASASGGFGTK;DSQDAS(0.001)AEQS(0.999)DHDDEVASLASASGGFGTK;DSQDASAEQS(1)DHDDEVASLASASGGFGTK;DSQDAS(0.001)AEQS(0.999)DHDDEVASLASASGGFGTK;DSQDASAEQS(1)DHDDEVASLASASGGFGTK;DSQDAS(0.002)AEQS(0.998)DHDDEVASLASASGGFGTK 309.3 3.419899999999998e-92 18081240000.0 3651210.0 3247490.0 3061240.0 2782010.0 3016140.0 3865730.0 4028940.0 3687660.0 5017400.0 3999160.0 True False 3631552.291047566 3355580.74150084 3492235.983224927 3134212.1807540865 3400227.5509376125 3598501.1840496045 3834044.7801545686 3962851.9147580536 3780928.9997154763 3743930.184946871 0.969983977171599 0.8962722528834918 0.9327727309836266 0.8371449321773513 0.908197370936249 0.9611560596183152 1.0240695180615331 1.0584737746156154 1.0098823463421849 1.0 21.83612210179623 2.42914631189096 2.5911004816923926 1.0320984870666023 0.9059623241329162 0.7060181625696784 0.03453537379792666 0.1417089060928886 1.9433344230441263 0.01345186414310956 0.011020028640258335 268.6249278739056 -2.42914631189096 -0.12613616293368612 DSQDGSSYR ddPTM_BT-474_Trastuzumab_2h_R1 10 DSQDGSSYR 9 0 Q14847;Q14847-2;C9J9W2;Q14847-3;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;;;;;; 227.99 4.1826e-07 18516856000.0 10464200.0 11327042.0 10462990.0 10195371.0 10284862.0 9611534.0 11564251.0 10001358.0 12410420.0 10698831.0 False True 10407861.909881908 11704055.745628528 11936088.046060601 11486103.923245065 11594578.212546937 8947111.27769736 11004843.999401152 10747710.119826876 9352038.282108046 10016022.445849951 1.039121264568882 1.168533298413084 1.191699410678359 1.14677298152464 1.157603058023402 0.8932798749272487 1.0987239754001261 1.0730517206738182 0.933707799944376 1.0 23.255806364669798 2.787280500556337 24.986828173514123 1.0181668614069763 1.1454553731576789 0.5063553771787624 0.06832955865641187 350.58997147188 179805.40569994334 0.020956512563435233 0.022227691969740008 612.7460221414941 -2.787280500556337 0.12728851175070255 DSQEDWTTFTHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSQEDWTTFTHDR 13 0 O15357;A0A0A0MTP6;O15357-2;F5GY16 O15357 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 0 92.575 0.0060098 274810000.0 706540.0 696420.0 648610.0 621690.0 613100.0 848420.0 818400.0 700230.0 969710.0 831980.0 False True 702736.0671439731 719599.9187052195 739928.6501808158 700395.8902566889 691174.6508715951 789770.7223658576 778810.8654083962 752484.7182958932 730737.9639482797 778882.324106087 0.9022365065871716 0.9238878537025409 0.9499877289294275 0.8992319745611432 0.8873929083765603 1.0139795164465533 0.9999082548217116 0.9661083516813789 0.9381878896622003 1.0 19.571045852463616 2.741260146873441 24.999998840133177 0.9816491834938931 0.9145176925829692 0.666158513109399 0.025123611278878865 161.75356993972355 1497986.6912755677 0.00831301520653743 0.008453798243669526 551.1377347342185 -2.741260146873441 -0.06713149091092385 DSQGTYSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSQGTYSSR 9 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 136.99 0.0004124 38284000.0 38147.0 45784.0 45538.0 50435.0 49414.0 45253.0 37913.0 33470.0 53147.0 44615.0 False True 37941.62079053014 47307.89276298757 51949.35457660838 56820.06582878294 55706.5800002756 42124.76662410374 36079.0033482753 35967.70135721626 40049.63398331376 41767.63250317677 0.9083976877943554 1.132644823940869 1.2437706296294673 1.3603851217677063 1.3337260615870115 1.0085504995022114 0.8638029303080847 0.8611381397899587 0.9588677064774418 1.0 15.350097749702629 2.5282707428320794 5.137122686665566 0.9052809806259657 1.2032057123351168 0.529457506374666 0.12293740534183274 0.1623011435397579 9.560070415275282 0.04419166242317759 0.040596167386742196 337.4976419583587 -2.5282707428320794 0.297924731709151 DSQKPTS(ph)PLQSAGDHLEEELDLLLNLDAPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSQKPTSPLQSAGDHLEEELDLLLNLDAPIK 31 1 Q9NQS1 Q9NQS1 AVEN Cell death regulator Aven 1 DS(0.042)QKPT(0.116)S(0.826)PLQS(0.015)AGDHLEEELDLLLNLDAPIK 167.01 7.3768e-13 213900000.0 292990.0 214800.0 187510.0 157100.0 168960.0 261320.0 224320.0 216170.0 312750.0 226770.0 True False 291412.57439424895 221949.4881506578 213909.77813386248 176988.84389217407 190476.05449562 243255.56348111253 213468.78461438353 232301.7030890182 235676.95313529207 212297.3444524353 1.3726623625268155 1.0454652116498095 1.0075951665132035 0.8336837389495845 0.8972135519966228 1.1458248058096334 1.005517921879662 1.0942280210248454 1.1101267128100838 1.0 17.695726799663788 4.739838427131006 3.9555777600824924 1.0138981996640373 1.406246824109178 0.5927852882561154 0.08917525596802778 0.1825185583801894 5.889646064616453 0.023387054247229134 0.20677124923890552 54933.64632913081 -4.739838427131006 0.3923486244451406 DSQQTLINIPSLNDSDS(ph)EIEDISEIESNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSQQTLINIPSLNDSDSEIEDISEIESNR 29 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 DSQQTLINIPS(0.012)LNDS(0.419)DS(0.569)EIEDISEIESNR;DSQQTLINIPS(0.002)LNDS(0.429)DS(0.57)EIEDISEIESNR 142.45 4.8883e-08 383240000.0 342020.0 434230.0 377430.0 393920.0 424830.0 446210.0 473460.0 401480.0 385320.0 455270.0 True False 340178.60232199414 448683.0830524214 430568.86331963015 443790.2316104729 478929.5823353114 415364.5529653576 450556.93100715935 431440.47627413174 290363.0490234721 426214.2788237431 0.7981398541147229 1.0527171550673695 1.0102168902175326 1.041237362660011 1.1236826313211534 0.974543964391976 1.0571136477421559 1.012261901372267 0.6812607260010382 1.0 18.701219400835548 1.350495093044212 13.17984758222809 0.8407728410567568 1.0163668486631419 0.2796304748394125 0.10738984497800853 0.5483940886387222 60.91097901252044 0.06581021421630616 0.024062525671167845 22.412747221861064 -1.350495093044212 0.1755940076063851 DSQS(ph)ASGEERPPEADGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSQSASGEERPPEADGK 17 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 DS(0.001)QS(0.997)AS(0.002)GEERPPEADGK 205.63 4.668e-12 504140000.0 297080.0 212540.0 214240.0 195600.0 190800.0 283190.0 263050.0 291320.0 389150.0 278100.0 True False 295480.55428869126 219614.2654168569 244403.12979253766 220362.9399446799 215097.2490397981 263613.7418575554 250325.2665514154 313059.77769298595 293249.19684284227 260351.41990661112 1.13492968232968 0.8435301236138187 0.9387432182248356 0.8464057542829027 0.8261804338034883 1.0125304557667267 0.9614899225101514 1.2024508174577326 1.1263591224047547 1.0 17.990100749367933 1.8824645399515132 5.094319870716798 1.1264533936500922 0.9257934069455006 0.38840140810034196 0.09820402134847665 0.1980200352571979 7.231650638955957 0.04378580980097521 0.02576957231693245 76.28945984430787 -1.8824645399515132 -0.20065998670459162 DSRDPMYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSRDPMYR 8 1 Q9HCD5;Q5JY17 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 85.86200000000002 0.014995 148650000.0 18806.0 49784.0 44512.0 61732.0 40130.0 32747.0 35354.0 29084.0 23958.0 31830.0 False True 18704.750585543014 51441.03034493652 50778.902694760254 69547.26487047547 45240.31763085483 30483.276968146314 33643.79195460461 31254.395765559537 18053.87192075247 29798.582148965983 0.6277060597056653 1.7262912070036704 1.704071101131981 2.3339118795250724 1.5182036985751242 1.02297742945478 1.1290400256769284 1.048855130399017 0.6058634545261055 1.0 14.862956066769806 2.7685030998364843 4.276831295496208 0.9808504089323353 1.646930201749922 0.36020726377967016 0.41148014226987617 0.23749782129825342 10.306162600997903 0.13359727875138963 0.13727950516163173 586.8175580947038 -2.7685030998364843 0.6660797928175868 DSREHEEPT(ph)TSEMAEETYSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSREHEEPTTSEMAEETYSPK 21 1 P24593;C9JXX4 P24593 IGFBP5 Insulin-like growth factor-binding protein 5 1 DS(0.207)REHEEPT(0.264)T(0.264)S(0.264)EMAEETYSPK 65.78399999999999 0.034372 103040000.0 139430.0 137550.0 116940.0 105540.0 112410.0 147780.0 147360.0 136690.0 198060.0 147140.0 True False 138679.3243721292 142128.2685992693 133404.13553929856 118901.35317874007 126724.7471937302 137564.31643670145 140231.63383013342 146890.50189775584 149250.76686802882 137749.39922710822 1.0067508471923554 1.0317886640285205 0.9684552984463793 0.8631714827496759 0.9199658793777996 0.9986563804165736 1.0180199305184099 1.0663603814022928 1.083494866078931 1.0 17.071686501153668 2.2371774261389166 2.305221305163964 1.0542134437212158 0.9582308701162133 0.4024478581612466 0.04808406483947883 0.3123342759881068 3.3823639093314406 0.02406194990885766 0.016469238158718237 172.65431077457066 -2.2371774261389166 -0.09598257360500251 DSRPLS(ph)PILHIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSRPLSPILHIVK 13 1 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 DS(0.159)RPLS(0.841)PILHIVK 123.02 0.00013822 132620000.0 222570.0 222430.0 201190.0 191090.0 208260.0 222200.0 218030.0 229080.0 343460.0 245720.0 True False 221371.70784985175 229833.4480882256 229515.80322517126 215281.97440710085 234780.6765462703 206839.83700253788 207483.05594451676 246175.11284466973 258818.88512820945 230037.93922852405 0.9623269474255588 0.9991110547199985 0.9977302178714351 0.9358542122620723 1.0206171961618675 0.8991553206232615 0.9019514634861998 1.0701500529445915 1.1251139094542744 1.0 17.811512293097806 1.637588745893073 7.087130485462633 1.0747519162683608 0.9619242656180415 0.5060915021221919 0.047430740518570796 0.09469397185987927 9.776606150810297 0.02430764488638897 0.012177324530568872 43.40989605213168 -1.637588745893073 -0.1128276506503193 DSS(ph)QEYTDSTGIDLHEFLVNTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;Q15032-2;Q15032-4;Q15032;Q15032-3;H7C2F9 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 DS(0.136)S(0.864)QEYTDSTGIDLHEFLVNTLK 297.56 6.308999999999998e-62 202050000.0 224730.0 180980.0 158240.0 154600.0 157310.0 210050.0 197990.0 179640.0 269860.0 209200.0 True False 223520.0786498504 187003.80989527964 180518.8165532635 174172.34414850504 177342.49605057997 195529.7379045144 188412.46730475125 193045.64899343663 203356.61893873705 195848.67689486925 1.141289704856342 0.9548382601311242 0.9217259948616616 0.8893210151325149 0.9055077566124007 0.9983715029613089 0.9620308408102766 0.9856877873985471 1.0383354238736984 1.0 17.57937985626819 1.4929387440417514 3.2463343273795844 1.018868024401329 0.9612076938356258 0.07873471645091079 0.06671309854364128 0.540255531471002 11.592079792344208 0.04901093574569844 0.017894054666997946 31.112774696277757 -1.4929387440417514 -0.0576603305657033 DSS(ph)TSPGDYVLSVSENSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DSSTSPGDYVLSVSENSR 18 0 P46108-2;P46108;I3L297 P46108-2 CRK Adapter molecule crk 1 DS(0.003)S(0.995)T(0.001)SPGDYVLSVSENSR;DSS(0.999)T(0.001)SPGDYVLSVSENSR;DS(0.001)S(0.999)T(0.001)SPGDYVLSVSENSR;DS(0.058)S(0.936)T(0.005)SPGDYVLSVSENSR 366.78 1.7795999999999994e-107 1932350000.0 1958790.0 1598910.0 1547270.0 1387090.0 1448150.0 1778820.0 1645370.0 1704990.0 1998820.0 1753330.0 True False 1948244.09228203 1652128.7527884927 1765112.1668880673 1562695.4517784596 1632563.3186424728 1655854.3602918747 1565777.1671762126 1832225.0115637912 1506237.5938157805 1641430.9782986674 1.1869180721210542 1.006517346529498 1.075349612761418 0.952032386642406 0.9945976043017137 1.008787077972756 0.9539098432266282 1.1162364033502528 0.9176368752202947 1.0 20.646522655598275 7.103407383044804 1.2937656115547578 1.0057435365638687 96.4353545659064 0.4920727060028004 0.055658689872193266 681.9108754083943 2.824163598086555 0.014697064634301931 192243.8269165873 12688415.244509859 -7.103407383044804 95.42961102934252 DSSDSADGRAT(ph)PSENLVPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 DSSDSADGRATPSENLVPSSAR 22 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 DSSDS(0.004)ADGRAT(0.995)PSENLVPSSAR;DSSDS(0.007)ADGRAT(0.992)PS(0.001)ENLVPSSAR;DSSDS(0.01)ADGRAT(0.976)PS(0.014)ENLVPSSAR 136.16 7.9816e-06 1970510000.0 1034480.0 1001340.0 878090.0 979580.0 935480.0 986010.0 980740.0 950130.0 1424630.0 1049650.0 True False 1028910.474621533 1034668.9965771879 1001717.4395048984 1103594.7275614012 1054607.8329756309 917849.4495178773 933297.8594093709 1021033.5252623805 1073549.0255639702 982660.4383494235 1.0470661425525543 1.0529262766649314 1.0193932719907652 1.123068238521041 1.0732169443465716 0.9340453870917921 0.949766392322696 1.039050200267971 1.0924923642669613 1.0 19.906333448947592 DSSEATGWEEPS(ph)PPSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSEATGWEEPSPPSIR 17 0 A0A1B0GU24;Q9HCJ0-2;Q9HCJ0 A0A1B0GU24 TNRC6C Trinucleotide repeat-containing gene 6C protein 1 DSSEATGWEEPS(1)PPSIR 314.17 1.0303e-41 0.0 219430.0 225470.0 200100.0 198150.0 186550.0 215860.0 195170.0 190530.0 218560.0 204150.0 True False 218248.613260965 232974.63265050654 228272.34069962098 223235.7696832227 210306.0367315218 200938.1062797833 185728.88147819735 204748.31609173608 164698.816553955 191120.9722183916 1.1419396350264217 1.2189904119171666 1.1943866654193083 1.168033874524947 1.1003817858942642 1.0513660743111635 0.9717870274642975 1.0713021899960444 0.8617516677644129 1.0 17.544126572246398 2.804613380947098 1.05612410810604 0.9800851945592083 1.1937725442114917 0.7574596561657793 0.05188691565739511 0.2469858974160605 0.5835758054716286 0.025840147026155273 0.02566995864176535 637.6955420201696 -2.804613380947098 0.21368734965228342 DSSFFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSFFDK 7 0 O75363;G3XAF7;O75363-2;H0Y542 O75363 BCAS1 Breast carcinoma-amplified sequence 1 0 96.253 0.029935000000000007 116770000.0 235870.0 227950.0 205780.0 202970.0 193430.0 268700.0 259540.0 200790.0 249980.0 215150.0 False True 234600.10212762046 235537.17795131516 234752.03532817564 228665.98118901698 218062.1639505668 250125.4014517641 246985.0586609174 215773.96939096082 188375.77856038493 201418.94280081792 1.1647370344884354 1.1693894063590462 1.1654913488465712 1.1352754513022318 1.0826298704497088 1.2418166731175415 1.2262255735557084 1.0712694962575515 0.9352436068869088 1.0 17.619839844969558 1.4807802856932228 3.9930108461347382 0.9720504868635621 1.1669072250735635 0.767876952134798 0.04446247246312866 0.09500999264174459 3.083737793689741 0.03144156255185239 0.012062597554244228 30.253824669401148 -1.4807802856932228 0.19485673821000138 DSSFFDKFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSSFFDKFFK 10 1 O75363;G3XAF7;O75363-2;H0Y542 O75363 BCAS1 Breast carcinoma-amplified sequence 1 0 ; 149.31 2.1501e-05 665180000.0 731070.0 1044940.0 952690.0 1053300.0 935820.0 1356630.0 1374450.0 1025130.0 1500570.0 1216150.0 False True 727134.0003495126 1079720.196220431 1086820.4710700747 1186647.6720027183 1054991.1299602939 1262849.3612635152 1307962.6025911148 1101630.4061046648 1130774.6301078356 1138534.2658016009 0.6386579852628008 0.9483422929394567 0.954578622457958 1.0422590761176982 0.9266222033445016 1.1091887167527528 1.1488126812505073 0.9675865182055339 0.9931845391686108 1.0 20.118746281403123 5.185843212136559 1.2187240182812369 1.0277917816302058 3.7210403196070214e-13 0.7609658911783241 0.06380295698360318 1.872486555544885 1.1291968425423098 0.018329957914787746 3.158101411089987 153406.30593646006 -5.185843212136559 -1.0277917816298336 DSSFTEVPRS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 DSSFTEVPRSPK 12 1 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK 186.42 7.137999999999998e-06 4211990000.0 5492320.0 4383450.0 3942480.0 3841010.0 3761200.0 5629830.0 5563450.0 4930280.0 8038110.0 5151980.0 True False 5462749.959374111 4529350.483398521 4497546.91534953 4327281.472172373 4240166.525621015 5240653.103294318 5294324.669057115 5298202.529054565 6057225.495655717 4823176.225568009 1.1326042640564689 0.9390804464883751 0.9324865410282349 0.8971850228555073 0.8791232845989709 1.086556422200216 1.0976842689245967 1.0984882743799425 1.255858217152822 1.0 22.20155209248813 2.603897165198149 5.4702989473862305 1.1149324628306327 0.9510549733077363 0.4339022428714534 0.08678750818456181 0.21163527110744432 8.568627329535301 0.028268482055467066 0.026514350404057006 401.6956837203256 -2.603897165198149 -0.1638774895228965 DSSGQHVDVSPTSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSGQHVDVSPTSQR 15 0 A2A274;Q99798 A2A274 ACO2 Aconitate hydratase, mitochondrial 0 76.15100000000002 0.029712 166320000.0 128290.0 157300.0 163830.0 166790.0 217250.0 297780.0 165600.0 136190.0 172660.0 223030.0 False True 127599.30089435888 162535.63541014193 186895.8399641125 187905.5968986359 244915.49975836524 277195.16949872073 157589.295346567 146353.18935880726 130110.25652546632 208796.03445441037 0.6111193693298786 0.7784421568869921 0.8951120190212248 0.899948111512933 1.172989230367023 1.327588285970273 0.7547523388475842 0.7009385486713484 0.6231452473005433 1.0 17.67173478630972 -2.6527323730344605 2.12919239738095 4.238157920495547 0.8680739356943218 0.03359528593402472 0.2192485843406268 9009039.659526162 597656.4419217521 143141762.61610156 0.060176354520991134 0.0022246803917214753 2.6527323730344605 -3.3700839848012247 DSSGSVS(ph)PNTLSQEEGDQICLYHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSGSVSPNTLSQEEGDQICLYHIR 25 0 H7C4T3;H7C4L8;G5E9U9;Q9H0J9 H7C4T3 PARP12 Poly [ADP-ribose] polymerase 12 1 DS(0.001)S(0.007)GS(0.399)VS(0.592)PNTLSQEEGDQICLYHIR 350.04 4.1368999999999984e-103 308310000.0 79014.0 88523.0 93845.0 82295.0 73157.0 96784.0 86094.0 88639.0 84637.0 82878.0 True False 78588.59740328066 91469.43454171641 107057.56028463734 92713.53856210352 82473.11031448902 90093.54988502985 81929.30430898137 95253.69227972194 63779.34542769542 77588.65508457436 1.0128877387759372 1.1789021789591727 1.3798094601322943 1.1949367914812095 1.0629532142887441 1.161169114051851 1.0559443802663617 1.2276755174566703 0.8220189582893748 1.0 16.24355809833086 1.2419629371064314 24.999998980723223 0.9110094429247418 1.163313628412342 0.4671940610904898 0.10598469195014132 69.6243057654547 511625.39679065585 0.07817820570373152 0.025956280829157567 17.456731700012377 -1.2419629371064314 0.25230418548760014 DSSGWSSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSSGWSSSK 9 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ; 168.25 0.00013811 242590000.0 168120.0 173546.0 172308.0 151743.0 146126.0 156239.0 181577.0 161839.0 239690.0 188231.0 False True 167214.8605998878 179322.37369922778 196567.4686720156 170953.64824143983 164734.2799433416 145438.56567704555 172793.4268184998 173916.2479817901 180621.61118144894 176217.93642733307 0.9489094242619401 1.0176170334009949 1.115479347092877 0.9701262635766702 0.9348326469097713 0.8253334968374233 0.9805666229087557 0.986938398597738 1.0249899348692681 1.0 17.42700125157697 3.501553805120692 24.50549594669562 0.9552696421724083 1.0291033484472722 0.19154080315500155 0.06311058404519926 945.5308806786076 948350.9817917263 0.017706714678291505 0.02727194422307017 3173.611821007188 -3.501553805120692 0.07383370627486396 DSSKGEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 45 2 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 DS(0.104)S(0.104)KGEDS(0.39)AEET(0.39)EAKPAVVAPAPVVEAVS(0.007)T(0.002)PS(0.001)AAFPSDATAENVK;DS(0.044)S(0.044)KGEDS(0.456)AEET(0.456)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 136.56 1.3327e-10 721360000.0 481770.0 291820.0 244059.0 224005.0 248787.0 452740.0 404270.0 428610.0 783290.0 399600.0 True False 479176.2038496794 301533.0522910849 278420.38580114313 252364.01003225005 280468.5497739217 421443.14943532407 384713.91563862684 460595.05463747965 590258.6750482598 374097.18588522787 1.2808869511161987 0.8060286569051993 0.7442461379181875 0.6745947832648886 0.7497210894817284 1.1265605979848825 1.02837960335969 1.2312176408052136 1.5778217461099795 1.0 18.513053587813666 2.1836211979640923 1.4533898320354577 1.2867423337298363 0.8424112222346488 0.3903270929142455 0.21380761202241846 0.39713931934380564 1.6230360998448379 0.12941105179348542 0.07256325653031352 152.62342594788532 -2.1836211979640923 -0.44433111149518745 DSSKGEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK 49 2 Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 DS(0.249)S(0.249)KGEDS(0.221)AEET(0.28)EAKPAVVAPAPVVEAVS(0.001)TPSAAFPSDATAEQGPILTK 84.536 1.7686e-05 1048400000.0 775220.0 454260.0 415240.0 382560.0 435140.0 786370.0 706400.0 645360.0 1346900.0 641900.0 True False 771046.3016550395 469379.7694940309 473702.18266921805 430992.05677523935 490552.49972315325 732010.0928158683 672228.7332899438 693520.040271679 1014974.5425353324 600933.3924417619 1.2830811390295036 0.7810845185134554 0.7882773509131061 0.7172043727242333 0.8163175917548866 1.218121845154094 1.1186410037200443 1.154071397919346 1.688996742902245 1.0 19.196845565673907 2.7333003390816133 23.14051463707251 1.2279241085443493 0.8580256075734646 0.39233830050427154 0.22249890425683422 160.11653490443825 704366.103627473 0.07010778613909174 0.06804507909677335 541.128414337849 -2.7333003390816133 -0.3698985009708847 DSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 43 3 P30043;M0R192;A0A2R8YEP4;A0A2R8Y7Y9;M0QZL1 P30043 BLVRB Flavin reductase (NADPH) 0 122.1 4.3841e-09 366510000.0 94711.0 160320.0 171050.0 166070.0 154300.0 202050.0 228780.0 179600.0 273910.0 197500.0 False True 94201.08649938132 165656.15428451335 195132.35320674747 187094.4449724593 173949.19039224784 188082.75907454008 217713.03737552863 193002.66399032087 206408.55070595635 184895.3809117429 0.509483179270697 0.8959453365878669 1.055366295493834 1.0118935586701656 0.9407979233146984 1.017238819850879 1.177493111520459 1.043847948167228 1.1163532030282706 1.0 17.496349657973074 4.766261044712172 1.9312348825323353 1.049643432310525 0.3171489440069194 0.8724886467580336 0.061853937908959065 0.28498038582626267 1.057236242300662 0.016745028039420816 0.3819956616673396 58379.590551225636 -4.766261044712172 -0.7324944883036056 DSSSEKDGRS(ph)PNKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSSSEKDGRSPNKR 14 3 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 DSS(0.002)S(0.002)EKDGRS(0.997)PNKR;DSSSEKDGRS(1)PNKR 93.226 0.025674 392720000.0 409740.0 322900.0 262440.0 291530.0 274240.0 378410.0 481050.0 383000.0 754530.0 411740.0 True False 407534.00536639354 333647.53130282805 299389.27083062695 328437.66810875566 309162.83845217136 352251.4073813251 457779.7737105438 411581.4048345935 568586.1916840031 385462.4006916514 1.05726007163121 0.8655773707218921 0.7767016193886102 0.8520614916511342 0.802057056401422 0.91384115999191 1.1876120028545725 1.067760186456774 1.4750756251809904 1.0 18.556230616078555 2.2884439782368444 4.3418846181009005 1.1772115657727837 0.8637748447290009 0.5510905320247895 0.13486744910081214 0.15496175694866318 6.118980836729763 0.04794696806466145 0.03838503117037081 194.287105525109 -2.2884439782368444 -0.31343672104378284 DSSSLSSCTSGILEERS(ph)PAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSSLSSCTSGILEERSPAFR 21 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 DSSSLSSCTSGILEERS(1)PAFR 152.57 8.35e-13 0.0 53944.0 61464.0 48358.0 53603.0 55166.0 53504.0 62223.0 48600.0 65272.0 55389.0 True False 53653.571497741796 63509.792084227374 55166.386064728984 60389.13430396058 62191.06310550053 49805.39441486859 59213.03577505691 52226.77878579953 49186.590199989725 51854.02659909135 1.0347040532177685 1.224780335291074 1.0638785391006778 1.1645987450667679 1.1993487716263547 0.9604923220319663 1.1419177961407248 1.00718849067576 0.948558741257938 1.0 15.66216840193389 1.9389294055852266 0.9369178266811433 0.9735107616219648 1.1324350947098987 0.3622826063552719 0.07637576660565744 0.5737621545027602 0.927440070624702 0.060356768526565206 0.02793501663330354 86.88191915545552 -1.9389294055852266 0.15892433308793386 DSSSS(ph)LTDPQVSYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSSSLTDPQVSYVK 15 0 O94887-3;O94887-2;O94887;H7C3M7 O94887-3 FARP2 FERM, RhoGEF and pleckstrin domain-containing protein 2 1 DSSS(0.003)S(0.997)LTDPQVSYVK 341.73 6.136899999999999e-58 0.0 194730.0 199810.0 164570.0 161500.0 178180.0 224330.0 225120.0 195200.0 240350.0 208690.0 True False 193681.59531653678 206460.55506230437 187740.02553191732 181945.88344103209 200870.16684439825 208822.59511601873 214230.08555808658 209766.81520551594 181118.96302499602 195371.22553150225 0.9913516936264853 1.0567603008100803 0.9609400003566315 0.9312829099886799 1.0281461166962345 1.0688503107247365 1.0965283397044743 1.073683264435952 0.9270503500823454 1.0 17.575858475827665 3.014136313339987 24.991544089098817 1.0462166995395494 0.9873833652834195 0.1357148149363676 0.05367492457723954 384.14614511122096 679126.3227802119 0.016008916926195545 0.01912683407411634 1033.085612626095 -3.014136313339987 -0.05883333425612991 DSSSSLTDPQVSYVKS(ph)PAAER ddPTM_BT-474_Trastuzumab_2h_R1 1 DSSSSLTDPQVSYVKSPAAER 21 1 O94887-3;O94887-2;O94887;H7C3M7 O94887-3 FARP2 FERM, RhoGEF and pleckstrin domain-containing protein 2 1 DSSSSLTDPQVSYVKS(1)PAAER 106.38 0.00022303 291340000.0 264110.0 247120.0 260950.0 228430.0 255990.0 317100.0 299070.0 251030.0 388780.0 278330.0 True False 262688.06110537966 255345.23981280552 297689.4917819397 257349.21457854472 288588.80912839575 295179.623373109 284602.841541653 269763.13330451114 292970.3783850967 260566.74110969846 1.0081411771381372 0.9799609832219734 1.1424692595614594 0.9876518142052552 1.1075427658163788 1.1328369158550382 1.0922454659009428 1.0352938067062865 1.1243583012068157 1.0 17.991293423660487 4.263291084186777 24.996320034397154 1.0773943187314665 0.9940510010113766 0.2946824782016426 0.0518236012925945 269.667704038372 272561.8359588657 0.011914873857612432 0.03259990989886879 18335.42935640912 -4.263291084186777 -0.08334331772008996 DSTEEKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSTEEKSPR 9 1 A0A1B0GVJ7;Q9BY89-2;Q9BY89 A0A1B0GVJ7;Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 DSTEEKS(1)PR;DSTEEKS(1)PR 95.094 0.0050132 235080000.0 459720.0 359940.0 313620.0 302537.0 306483.0 290584.0 411520.0 405360.0 617030.0 442660.0 True False 457244.9185996933 371920.3853116755 357774.9699660921 340838.15318018256 345511.793382937 270496.61204115895 391613.2054409374 435610.0215763727 464971.2242783995 414409.0598197073 1.1033661252449987 0.8974716563230618 0.8633377130358723 0.8224679096747246 0.8337457524052568 0.6527285193978171 0.9449919015074443 1.0511595035250654 1.1220102776727172 1.0 18.660696018035814 1.8596382753287009 3.718022675986691 1.0627426424363573 0.8573381671602508 0.39275532642938515 0.10739365821907582 0.2387228530315619 5.416479700288847 0.05565494700829707 0.030322152222873926 72.3832827243939 -1.8596382753287009 -0.2054044752761065 DSTFDLPADSIAPFHICYYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSTFDLPADSIAPFHICYYGR 21 0 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 ; 205.62 4.6527e-22 172164000.0 145279.0 181566.0 155988.0 166526.0 154255.0 170785.0 175931.0 148378.0 202792.0 171926.0 False True 144496.83400601422 187609.31455103526 177949.7545279984 187608.1745257044 173898.45990898358 158979.03493464645 167420.5454083145 159450.71980821752 152816.62887358 160953.53548674614 0.8977549549876954 1.16561164055004 1.1055970531486201 1.1656045576032292 1.0804264683164007 0.9877324810161608 1.0401793592294273 0.9906630464873983 0.9494456174040601 1.0 17.296284741672878 2.786039888546652 5.302761547996882 0.9966174677366728 1.094331089158365 0.26679171656314027 0.07299118471490805 0.26180729152749216 17.65188149681587 0.022056619597663744 0.023116288920815232 610.9981405359702 -2.786039888546652 0.09771362142169226 DSTLIMQLLR ddPTM_BT-474_Trastuzumab_2h_R1 5 DSTLIMQLLR 10 0 B7Z2E6;H0YB80;P63104-2;P27348;P31946-2;P31946;P63104;E7EX29;B0AZS6;P31947-2;P31947;P61981;P62258;P62258-2;K7EM20;Q04917 B7Z2E6;P27348;P31946-2;P63104;P31947-2;P61981;P62258;Q04917 YWHAZ;YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta 0 ;;;; 196.99 7.520000000000002e-07 10979187000.0 2262456.0 2631946.0 2935825.0 2267835.0 2002204.0 2273855.0 2686662.0 2102999.0 3509917.0 2434986.0 False True 2250275.188278493 2719548.731565047 3349163.641351643 2554942.67847364 2257172.8114071265 2116668.755928921 2556697.89501448 2259935.4641925446 2644944.9858281845 2279583.1087836013 0.9871432980915764 1.1930026683765935 1.469200060505263 1.1207938278841572 0.9901691246569935 0.9285332689881124 1.121563800487515 0.9913810360695553 1.1602757432430453 1.0 21.120338577098586 3.480514500298994 24.101995753079184 1.0323359367516882 1.2275862095124563 0.3033193878172723 0.12529653797729998 98.79707802891303 701752.161077359 0.034557994815901 0.04781801531821345 3023.5315190174188 -3.480514500298994 0.19525027276076812 DSTSQHDDDNIST(ph)TSGFSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSTSQHDDDNISTTSGFSSR 20 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 DSTSQHDDDNIS(0.13)T(0.498)T(0.333)S(0.04)GFSSR 157.31 3.8159e-10 0.0 72478.0 82341.0 73337.0 77149.0 85709.0 91962.0 88134.0 90814.0 100010.0 89513.0 True False 72087.78650106284 85081.67040881443 83662.21214336884 86916.05548973476 96623.53311295627 85604.88339526285 83870.6217154247 97591.00182414803 75363.87556534159 83800.20370406508 0.8602340246765525 1.0152919282782984 0.9983533266675158 1.0371819118324952 1.1530226519994622 1.0215355048249153 1.0008403083554342 1.1645675966228466 0.8993280712238382 1.0 16.354666130425 5.619497296476422 1.0562414643693165 1.0519200290941657 3.3970149946864717e-09 0.3177611194459252 0.0738733597198796 10.255298399492567 2.322731919063526 0.020852077546350337 18.88891755804404 416387.12896845705 -5.619497296476422 -1.0519200256971508 DSTSQHDDDNISTTSGFS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSTSQHDDDNISTTSGFSSR 20 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 DSTSQHDDDNIS(0.002)T(0.01)T(0.039)S(0.158)GFS(0.395)S(0.395)R 154.33 2.7509e-08 193160000.0 91172.0 94525.0 91805.0 98525.0 123260.0 113590.0 106940.0 90702.0 126300.0 126130.0 True False 90681.1400821614 97671.20748343082 104730.34601663526 110998.25489800404 138956.43038074186 105737.79066209868 101766.90364952806 97470.64381542365 95175.05733329317 118080.27541467422 0.7679617934808115 0.8271593806876647 0.8869419185282497 0.9400236788760905 1.176796292968955 0.8954737807882712 0.8618450735496943 0.8254608441005605 0.8060199470153459 1.0 16.849408465945398 7.999879481843344 0.009062365542491723 1.6973366865454085 1.0809223673158282e-05 0.05051374035741141 0.1098015307023746 88806.18493966025 62.220957378855275 5090.6621761753795 6660.672610181308 99972253.51895308 -7.999879481843344 -1.6973258773217352 DSTSQHDDDNISTTSGFSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSTSQHDDDNISTTSGFSSR 20 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 0 157.88 1.0109e-10 0.0 48159.0 59917.0 59460.0 52206.0 59616.0 69095.0 64537.0 59871.0 65946.0 67385.0 False True 47899.71729496792 61911.30112440863 67831.45116441512 58815.27424719825 67207.74422828421 64318.6252821349 61415.098754718536 64338.878038777875 49694.49193112702 63084.43160879908 0.7592953772177099 0.9814038035300802 1.0752486696726284 0.9323262926727335 1.0653618097893744 1.0195641561929152 0.9735381169092169 1.0198851982650474 0.7877457347843582 1.0 15.944996390905928 4.736265852568872 6.0811934906542575 0.9906089105363808 0.7535782161153219 0.4314639354911074 0.07706368636398815 0.10895998771963453 20.400923058214453 0.01736125901632428 0.10734084679606659 54483.607118087275 -4.736265852568872 -0.23703069442105884 DSVFLSCSEDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DSVFLSCSEDNR 12 0 Q9BQA1;Q9BQA1-2;H0Y711 Q9BQA1 WDR77 Methylosome protein 50 0 130.79 0.00048913 159810000.0 55832.0 63544.0 63984.0 62643.0 50635.0 55230.0 61898.0 72500.0 67661.0 80106.0 False True 55531.40671551833 65659.0236268408 72992.39104110206 70573.59737706851 57083.06711284159 51412.08009743556 58903.75726667747 77910.31814754054 50986.85316094969 74993.56649780298 0.7404822747981347 0.8755287512398061 0.9733153715691126 0.9410620226887868 0.7611728549343483 0.6855532080734116 0.7854508062155321 1.0388933582699125 0.6798830291988235 1.0 16.194479215426966 -1.1048898873526087 4.384230558925095 1.0000171745492588 0.8460018567940334 0.14581374890864618 0.11775404038842598 16864671.22171567 4250142.844195604 2959.915011531389 0.02850722007027917 0.07854347514313374 1.1048898873526087 -0.15401531775522537 DSVLTWLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSVLTWLLK 9 0 O43896;Q9P2P6-3;Q9NQT8;E7ERX9;A0A1B0GUA8;Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9;Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2;A0A1B0GTU3;Q9P2P6 O43896;Q9NQT8;A0A1B0GUA8;Q96L93-5;Q9P2P6 KIF1C;STARD9;KIF13B;KIF13A;KIF16B Kinesin-like protein KIF1C;StAR-related lipid transfer protein 9;Kinesin-like protein KIF13B;Kinesin-like protein;Kinesin-like protein KIF13A;Kinesin-like protein KIF16B 0 161.37 0.00015025 17356000.0 154790.0 111580.0 127590.0 109940.0 107000.0 186570.0 165600.0 171030.0 249320.0 157190.0 False True 153956.62783878573 115293.87284846559 145553.56296783924 123858.39272759797 120625.81576131246 173672.85503853986 157589.295346567 183793.1270727428 187878.4267168379 147157.99962287035 1.0461995150337635 0.7834699652342063 0.9890971835772239 0.8416694508284732 0.8197027417500011 1.1801795042309662 1.0708850062547024 1.2489509747601846 1.2767122901801053 1.0 17.167006444867 2.7306589316846264 24.925530390928703 1.1699382516903247 0.8919251747864315 0.6046145899242209 0.10449228475125034 356.25614406182603 1123792.5148029902 0.03214016294276436 0.030811049869191396 537.8472243085599 -2.7306589316846264 -0.2780130769038932 DSVLTWLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSVLTWLLR 9 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C0K6;A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;O60333-3 A0A3B3ITW6;A0A087WWA3;O60333-3 KIF1A;KIF1B;KIF1Bbeta Kinesin-like protein KIF1A;Kinesin-like protein;Kinesin-like protein KIF1B 0 ; 160.63 0.00015156 383340000.0 160089.0 204304.0 183845.0 177998.0 178098.0 173559.0 188504.0 164053.0 231640.0 180806.0 False True 159227.09861156016 211104.13513562403 209728.77799061395 200532.52854945374 200777.7246304506 161561.2748439402 179385.3413647899 176295.46790425444 174555.42581697536 169266.80628419545 0.9406870851230049 1.2471679460956129 1.239042565962305 1.1847126613398955 1.1861612388039564 0.9544770081659257 1.0597786140278775 1.0415241580694683 1.0312442802512645 1.0 17.36893955868985 2.752691540580316 24.469755760174092 1.0252528051551417 1.1702354367445758 0.4116377679498796 0.08423082010495067 582.5486975445202 1008766.650598813 0.02523814624367279 0.02664764553848975 565.8372580723642 -2.752691540580316 0.14498263158943403 DSVVAGFQWATK ddPTM_BT-474_Trastuzumab_2h_R1 1 DSVVAGFQWATK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 167.3 0.00011537 290690000.0 383010.0 320300.0 364480.0 327170.0 314070.0 381640.0 373110.0 336890.0 442880.0 368490.0 False True 380947.9167164117 330960.99187456095 415795.61588304775 368589.68845450436 354064.95286126545 355258.1250839272 355061.2438813864 362030.44249275717 333738.15828795603 344972.65271983924 1.104284393887271 0.9593832707178168 1.20530022482891 1.068460602741879 1.0263565823833876 1.0298153267599477 1.0292446113684854 1.0494467884292584 0.9674336665723847 1.0 18.39612247299645 3.2913714988973943 4.660731676459049 1.0227136319125227 1.0854253609221867 0.23666692590226768 0.05923624246860243 0.3338326592262885 15.09786935087359 0.016358410531015305 0.021944660561925133 1956.0119282561009 -3.2913714988973943 0.06271172900966393 DSYCSYMGHFDLLNYFAIAENESK ddPTM_BT-474_Trastuzumab_2h_R1 3 DSYCSYMGHFDLLNYFAIAENESK 24 0 Q9BWJ5 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 0 ;; 227.38 4.4547e-33 380767000.0 311762.0 332351.0 311905.0 272776.0 292757.0 371550.0 383988.0 329719.0 459195.0 383232.0 False True 310083.5080320142 343413.1021245776 355818.5128731396 307309.41363164666 330037.86864331295 345865.6230346223 365413.0334633907 354324.3060591574 346032.54514775577 358773.8056585781 0.8642869215683506 0.9571855489678132 0.9917627966734816 0.8565547673346399 0.9199051420085799 0.9640213905798917 1.0185053303783576 0.9875980366201679 0.9644866478269393 1.0 18.45271503630494 2.5699765101981185 3.7000456114209404 0.9921944812962498 0.921089164594195 0.44801932045579973 0.039126374855171425 0.24094035290280208 6.104608853935216 0.013628209783442313 0.012519142408532797 371.51513431523585 -2.5699765101981185 -0.07110531670205478 DSYDSYATHNE ddPTM_BT-474_Trastuzumab_2h_R1 6 DSYDSYATHNE 11 0 Q14011 Q14011 CIRBP Cold-inducible RNA-binding protein 0 ;;;;; 215.93 2.8974e-11 11386260000.0 7896550.0 9434790.0 8307060.0 8202510.0 8335740.0 9065130.0 8919550.0 7901030.0 9803920.0 8245210.0 False True 7854035.852189178 9748821.281698996 9476621.84174009 9240946.924977694 9397247.079198146 8438478.900120698 8488077.290510077 8490644.97921741 7387875.281797451 7718993.638720566 1.0174947952789082 1.2629653213854541 1.2277017296921693 1.1971699106762566 1.2174186842257526 1.0932097233233875 1.0996352229041333 1.0999678684311944 0.9571034292265593 1.0 22.87998133818194 1.7869101874453273 0.9029536603467628 0.9841432622027619 1.1891811122344964 0.5227612450815635 0.06921565920313849 0.42772069344751934 0.6524289342416637 0.058964049698587394 0.025523648129412317 61.222377011426275 -1.7869101874453273 0.20503785003173447 DSYESYGNSR ddPTM_BT-474_Trastuzumab_2h_R1 10 DSYESYGNSR 10 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;;;;;;; 253.64 1.0122e-16 12947744000.0 2655920.0 3066446.0 2766213.0 2685054.0 2706666.0 2911394.0 2865277.0 2771260.0 3438338.0 2773174.0 False True 2641620.8218204495 3168510.8014042517 3155671.7460455773 3024981.5610952084 3051343.8714337223 2710136.1854643007 2726672.6050889185 2978065.4933731467 2591005.6712687262 2596187.6610862897 1.0174999524938617 1.2204475234577197 1.2155021739550176 1.1651629065325362 1.1753171456631095 1.0438907117871183 1.0502602126797074 1.1470917676756358 0.9980040002904123 1.0 21.307963239230336 2.7423916509527677 24.73465162122649 1.064492210696685 1.1657167654389948 0.4008196978872066 0.06600327881734208 322.35453498129056 2081247.2709199176 0.02037570890521583 0.020872547554142983 552.5755325994866 -2.7423916509527677 0.10122455474230985 DSYGGPPRR ddPTM_BT-474_Trastuzumab_2h_R1 5 DSYGGPPRR 9 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;; 104.2 0.0052892 629820000.0 408137.0 568189.0 519162.0 551605.0 533141.0 516040.0 534356.0 443622.0 597253.0 541438.0 False True 405939.63574028364 587100.8273874965 592255.496963002 621438.1364426657 601033.3461757185 480367.3694274965 508507.1588418482 476727.326306872 450068.00093017676 506882.9632916071 0.8008547636010183 1.1582571715864525 1.1684265202306288 1.2259992571207323 1.1857438298433147 0.9476889227210892 1.0032042812007211 0.9405076927642039 0.8879130559202776 1.0 18.95129314913997 2.7254111205314375 24.02422356505106 0.9552231766667237 1.1205848639052445 0.30394319246404355 0.11419473292757133 554.9972568835932 1013981.6735585245 0.03727158252234884 0.03534888588720571 531.3872386301503 -2.7254111205314375 0.16536168723852074 DSYLILETLPTEYDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DSYLILETLPTEYDSR 16 0 P17980;E9PM69;E9PKD5;E9PLG2;R4GNH3;E9PN50;E9PMD8 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 ;;;; 231.67 2.6076e-15 516697000.0 487673.0 514527.0 469611.0 481591.0 478021.0 502319.0 506314.0 466391.0 632759.0 514518.0 False True 485047.42275356414 531652.7201568602 535728.1468680138 542560.3712213621 538894.1408975539 467594.86986173637 481821.6575126906 501195.46470551024 476824.02298620064 481681.02073897864 1.006988861652512 1.1037443811699632 1.1122052225477306 1.1263893486793075 1.1187780246578967 0.9707562675904652 1.000291970760019 1.0405132092117584 0.9899165681360529 1.0 18.877718554215576 2.7437066679955153 24.99709702631591 1.0058975008626387 1.0970364724352641 0.6334968434574488 0.03531670262407039 300.8298142899442 1461291.7522846435 0.011313271194668326 0.01167626129927748 554.2512330848087 -2.7437066679955153 0.0911389715726254 DSYSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSYSSR 6 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ; 143.18 0.026596 746180000.0 560840.0 661960.0 584370.0 561580.0 550950.0 365110.0 605790.0 583450.0 758800.0 662370.0 False True 557820.499755182 683992.9384367295 666644.2165649043 632675.9704199054 621110.2167635045 339870.8050764931 576485.6233574676 626990.001699069 571803.9073990724 620096.9795165122 0.8995697740539116 1.103041880594285 1.0750644473138458 1.0202855219730322 1.0016339980365367 0.5480929859414722 0.9296701038714166 1.0111160389588274 0.922120130055957 1.0 19.242134336591604 2.9759979762551 24.996365151081978 0.8852510129859783 1.0308694932431013 0.21830753013535154 0.13058749617864554 1214.7965736802996 1265124.0145808288 0.04154786221033443 0.04430611014985498 946.2327520577135 -2.9759979762551 0.14561848025712298 DSYVGDEAQSK ddPTM_BT-474_Trastuzumab_2h_R1 11 DSYVGDEAQSK 11 0 C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JTX5;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle 0 ;;;;;;;;;; 372.48 1.456999999999999e-85 39400460000.0 21219640.0 17885410.0 15973700.0 14808640.0 14739480.0 20197690.0 20989690.0 18557860.0 25092230.0 19095700.0 False True 21105395.81596365 18480715.05989132 18222658.1141106 16683412.30563592 16616465.410257475 18801471.230548114 19974338.506297607 19942741.748103652 18908586.135155793 17876996.077348717 1.1805896093866417 1.0337707174029955 1.0193355771442978 0.9332335384228706 0.9294886757463457 1.0517131149550771 1.1173207411286707 1.1155532876897796 1.0577048880775985 1.0 24.091601000934247 2.4789337199245196 24.75016484387162 1.0867696500495474 1.012839800037848 0.09385635720334784 0.07213907629617379 111.65730601361561 1524780.5761610216 0.025872596598510465 0.021950303187606063 301.254622781069 -2.4789337199245196 -0.07392985001169938 DSYVGDEAQSKR ddPTM_BT-474_Trastuzumab_2h_R1 17 DSYVGDEAQSKR 12 1 C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JTX5;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle 0 ;;;;;;;;;;;;;;;; 225.89 2.6627e-11 79119254200.0 19188178.0 20774926.0 19120500.0 20944794.0 19492449.0 23000946.0 24531326.0 21223833.0 34885910.0 25460619.0 False True 19084870.981654983 21466406.85320204 21812500.201634698 23596402.772881866 21974696.839353055 21410944.741422947 23344652.04261424 22807663.19090027 26288744.92774429 23835700.497487396 0.8006842921888024 0.9005989505307339 0.9151189076206939 0.9899605331661742 0.9219236850903326 0.8982721000240773 0.9793986144890133 0.9568698513099921 1.102914719477847 1.0 24.50662068900662 7.71340526431238 0.24566607284422906 1.0166702375239967 1.4015736963905077e-11 0.5886908832277707 0.04871193695223339 33.35348604975693 0.5114536159124712 0.0650091556602259 13.553477063419706 51689849.099290684 -7.71340526431238 -1.016670237509981 DSYYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DSYYDR 6 0 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 0 ; 124.89 0.042251 2953900000.0 1853120.0 2153100.0 1948320.0 1988370.0 1914180.0 1958330.0 2103970.0 1831710.0 2341100.0 1935870.0 False True 1843143.0078209855 2224764.6319235642 2222626.520898975 2240097.4381278325 2157939.476766249 1822955.2565129625 2002192.933154086 1968401.5014349166 1764167.274132798 1812321.1192183106 1.0170068583739558 1.2275775017636767 1.226397737867579 1.2360378160212746 1.190704811571699 1.005867689330486 1.1047672026344155 1.086121813933243 0.9734297390374823 1.0 20.789407173747005 2.749212907963872 24.44594550006806 1.0490563713247372 1.187954857662084 0.5118915217785032 0.0700423335488283 460.0829807083724 1055843.8140157533 0.02149399998571866 0.022571312707874394 561.3230908954724 -2.749212907963872 0.1388984863373468 DT(ph)PGHGSGWAETPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 DT(0.999)PGHGS(0.001)GWAETPR;DT(1)PGHGSGWAETPR;DT(1)PGHGSGWAETPR 229.02 5.3048e-12 823270000.0 392520.0 651331.0 648193.0 659498.0 667921.0 635027.0 608463.0 569175.0 524278.0 579677.0 True False 390406.71593307157 673010.1585970968 739452.940205445 742990.3791801459 752976.7802720706 591129.0781827671 579029.3201356172 611649.7287120873 395076.7118652753 542681.5175735513 0.7194030076400355 1.240156771150552 1.3625909787967392 1.3691094225987643 1.3875113780155914 1.089274388458696 1.0669781471913489 1.1270878202134247 0.7280084157495365 1.0 19.049746249232765 1.6564754568879054 1.389586168635119 0.8901905984176637 1.2180808509660879 0.2474261142419475 0.2012248666561872 0.5494187447855674 2.045679536109176 0.1706152810942304 0.06272941406071987 45.33936745977956 -1.6564754568879054 0.3278902525484242 DTAAWTVGR ddPTM_BT-474_Trastuzumab_2h_R1 6 DTAAWTVGR 9 0 Q14974;Q14974-2;J3KTM9;J3QKQ5 Q14974 KPNB1 Importin subunit beta-1 0 ;;;;; 178.94 0.0001172 2530330000.0 1820950.0 1886840.0 1353113.0 1492721.0 1311761.0 1398960.0 1352830.0 1078322.0 1743590.0 1219290.0 False True 1811146.2075265627 1949642.3287811335 1543619.5489309651 1681699.3255478668 1478805.9879334082 1302253.1879976187 1287388.4445875373 1158791.8632481678 1313905.6074089971 1141473.8683133114 1.5866733858767934 1.7080043467504036 1.3523038869141006 1.4732701047574701 1.295523295788236 1.1408523875556447 1.1278299751967475 1.0151716087556575 1.1510606102183294 1.0 20.12246640174152 3.3510641089049478 0.6130272402418042 1.0263479266927098 1.6967590875909615 0.8784868038642217 0.08005974325498612 0.29838064432700073 0.22704055684797605 0.05042053066247857 0.11417720690045496 2244.2131815743946 -3.3510641089049478 0.6704111608982517 DTATYWPLNWR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTATYWPLNWR 11 0 E9PCJ7;Q8N806 E9PCJ7 UBR7 Putative E3 ubiquitin-protein ligase UBR7 0 87.258 0.021727 0.0 178220.0 197520.0 191790.0 204750.0 201060.0 211830.0 208220.0 104330.0 271540.0 172530.0 False True 177260.48332210325 204094.3337966388 218792.36493143588 230671.3290065098 226663.79922401378 197186.69069418372 198147.60312235597 112115.63437700557 204622.60544958344 161518.98768963557 1.0974591028437815 1.2635934431982279 1.354592225106395 1.428137535444148 1.4033260266561123 1.2208266874052287 1.2267759101060216 0.6941328445695791 1.2668640905722675 1.0 17.301344248244348 1.9425214924178764 9.803960267021996 0.954293138068288 1.300139771460207 0.43168160051911386 0.1569012355227355 0.46184728370876066 76.80825900389222 0.06479258067197233 0.04123211356755386 87.60350698899492 -1.9425214924178764 0.345846633391919 DTCEHSSEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTCEHSSEAK 10 0 Q9BWW4-2;Q9BWW4;A0A087WVT6;Q9BWW4-3 Q9BWW4-2 SSBP3 Single-stranded DNA-binding protein 3 0 ; 90.05 0.011095 352270000.0 241210.0 298030.0 271290.0 308450.0 295760.0 242770.0 356270.0 339840.0 371000.0 347320.0 False True 239911.3521609504 307949.7483870605 309485.273905048 347499.73837390926 333423.2828931374 225987.8813191097 339035.8590164336 365200.58647255384 279572.02114530286 325153.74024438777 0.7378397430724044 0.9470896695071179 0.9518121294635478 1.0687244074533053 1.0254327157440484 0.6950185507608052 1.0426940153344444 1.1231628035343115 0.8598148707598278 1.0 18.31076249363554 4.812685504998913 2.294344920782395 0.9820072158871131 0.6460306016758632 0.2643579522711208 0.11468819130504279 1.0956999863372714 5.718716918908416 0.0298751863843551 0.794549643603108 64965.90683731424 -4.812685504998913 -0.3359766142112499 DTCVQS(ph)PISSFPCTDLK ddPTM_BT-474_Trastuzumab_2h_R1 5 DTCVQSPISSFPCTDLK 17 0 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 DTCVQS(1)PISSFPCTDLK;DTCVQS(1)PISSFPCTDLK;DTCVQS(1)PISSFPCTDLK;DTCVQS(1)PISSFPCTDLK;DTCVQS(1)PISSFPCTDLK 287.01 1.5784e-36 1806640000.0 2959590.0 2589428.0 2465259.0 2288253.0 2248988.0 3210195.0 2952408.0 2486251.0 3399142.0 2641652.0 True False 2943655.89628136 2675615.5456377165 2812346.03878464 2577945.5951801324 2535383.2910037613 2988281.7756361985 2809588.7457461776 2671787.674546767 2561469.000269233 2473059.5077279406 1.1902891487579965 1.0819050400028056 1.1371930315451284 1.042411469325521 1.0252010851663975 1.2083339548839263 1.1360780996036017 1.0803572118656388 1.0357490356641341 1.0 21.237865524163666 1.2356865414083242 2.2685141951875023 1.0036686053218515 1.1133375755470483 0.3450349103875364 0.05485096012258094 0.3436832048273365 3.008978758429528 0.05129599733354407 0.014755415902970392 17.206262387668176 -1.2356865414083242 0.10966897022519673 DTCYS(ph)PKPSVYLSTPSSASK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTCYSPKPSVYLSTPSSASK 20 1 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 DTCYS(0.997)PKPS(0.003)VYLSTPSSASK;DT(0.179)CYS(0.82)PKPSVYLSTPSSASK 175.48 1.1279e-12 741020000.0 1251780.0 840420.0 770570.0 730740.0 649980.0 1259300.0 885500.0 895930.0 1538830.0 999290.0 True False 1245040.5555658329 868392.8716553821 879059.5580854919 823251.6090755406 732751.1002667082 1172247.5550733393 842664.9820615043 962788.8460403571 1159605.9657655705 935514.4566647888 1.3308619088629998 0.9282516859774648 0.939653633167183 0.8799988105053154 0.7832600501750084 1.2530512454639449 0.9007503583276489 1.029154428540639 1.239538264218484 1.0 19.83540042228817 1.4481171135683888 13.960039228749629 1.1246686509735364 0.9917953421085407 0.06805464334083966 0.1682228601556777 1.3540475157956886 644.8333229528267 0.0897940890934971 0.04058369758187003 28.061902642997918 -1.4481171135683888 -0.1328733088649957 DTDAAVGDNIGYITFVLFPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTDAAVGDNIGYITFVLFPR 20 0 O15144;H7C3F9 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ; 220.61 1.0415999999999999e-25 49123000.0 56960.0 69005.0 57319.0 56175.0 59068.0 65753.0 69260.0 61192.0 77429.0 63111.0 False True 56653.33368885094 71301.78971059671 65389.01697432068 63286.749240247475 66589.95967653455 61207.649875913114 65909.62920110644 65758.45776667989 58347.66044544378 59083.2019479545 0.958873788505166 1.206803073628362 1.1067277130972164 1.0711462336790043 1.1270540099568849 1.0359568855091843 1.1155392231308865 1.1129806036004197 0.987550750835091 1.0 15.850460393012686 1.2351699625652375 24.99542894649168 0.9937753134050479 1.09674101113691 0.2903302932680003 0.060978715208204366 100.0634704028345 737596.2286355231 0.04657380211896586 0.013480642844011546 17.185808277932253 -1.2351699625652375 0.10296569773186215 DTDFEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTDFEHR 7 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ;;; 176.66 0.00074355 2310020000.0 3137540.0 3545640.0 3201500.0 3211060.0 3169140.0 3737320.0 3718230.0 3194570.0 4278380.0 3826030.0 False True 3120647.8332534614 3663654.4840153623 3652243.37206315 3617579.8667626004 3572711.1940355618 3478967.8651049756 3538365.009882033 3432965.035097773 3224030.576354821 3581849.4897709177 0.8712392416726161 1.0228387581549878 1.0196529425631267 1.0099753987691895 0.9974487214603927 0.971276954835832 0.9878597690905024 0.9584336373992458 0.9001021917760756 1.0 21.77227328550813 1.6162154346843314 4.252760169448221 0.9442543694513801 0.9869408113915439 0.0733669513872468 0.04661677807396203 0.3356745366420992 13.807031754804662 0.025970824288007767 0.01172064760580092 41.32524477960748 -1.6162154346843314 0.0426864419401638 DTDIVDEAIYYFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DTDIVDEAIYYFK 13 0 O15145;C9JZD1;F8VR50 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 0 ;;; 290.48 3.708899999999999e-40 362226000.0 832112.0 818803.0 799697.0 752849.0 792811.0 974821.0 954166.0 888361.0 1151190.0 970194.0 False True 827632.001448334 846056.362878135 912287.3865090692 848159.606208653 893770.7814910451 907433.9187518065 908009.3453119111 954655.0088257547 867494.6496556903 908275.3882951284 0.9112126257233882 0.9314976204146839 1.0044171605502508 0.9338132653805413 0.9840306068060383 0.9990735524113438 0.9997070899568063 1.0510633901659308 0.9551009097406181 1.0 19.792770262141225 5.9820140272411 0.3786354393821377 1.0118722147244033 0.6769443477714989 0.462860041832575 0.029825880810066756 12.105936566596817 0.6609633877314666 0.023775887696016313 2.229929144332599 959431.6196170226 -5.9820140272411 -0.33492786695290433 DTDPDSKPFSLQETYEAK ddPTM_BT-474_Trastuzumab_2h_R1 5 DTDPDSKPFSLQETYEAK 18 1 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;H0Y961;B1AMS2;Q14141-2;Q14141-4;Q14141 D6RGI3;B1AMS2 SEPT11;SEPT6 Septin-11;Septin-6 0 ;;;; 251.75 1.6627e-30 6238770000.0 7539140.0 5140660.0 5161710.0 4437770.0 4766800.0 7261840.0 6981670.0 6691390.0 10491580.0 6896250.0 False True 7498550.107917192 5311763.760505403 5888433.901612389 4999591.226985194 5373823.724962841 6759846.0933326315 6643939.949530587 7190735.49998994 7906070.688969365 6456125.420823328 1.1614628928570174 0.822747919885982 0.9120693167793906 0.7743949971696201 0.8323604909579863 1.047043799912823 1.0290909046006895 1.1137849764809757 1.2245844331755764 1.0 22.622237174929065 2.539675882793501 3.0483138909684944 1.0986328851383704 0.8905679840666223 0.3936661893184835 0.11283677420805437 0.25287444212553345 4.645780944178665 0.03981388380988387 0.035595507258967714 346.4781746963474 -2.539675882793501 -0.20806490107174813 DTDSEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTDSEEEIR 9 0 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 ;;; 239.76 5.7306e-10 25839000000.0 17080360.0 16072960.0 14368800.0 12846660.0 13399800.0 16232540.0 14602680.0 15864100.0 17977070.0 15396030.0 False True 16988401.23956638 16607938.75729052 16391802.14415147 14473045.838802269 15106185.103162937 15110422.717088997 13896292.580745215 17047959.698267546 13546861.978896465 14413442.184195546 1.178649834124585 1.15225346902222 1.1372579800628895 1.004135282456822 1.0480622817307992 1.0483562860270599 0.964120326231482 1.1827819809039626 0.939876943049087 1.0 23.78091158189177 3.8674602513660457 4.682260522404733 1.0410519651336478 1.1609600900099053 0.4602602529665726 0.06317568678763819 0.22110769636551583 7.422032991956443 0.01633345747858666 0.030634216702218848 7369.877197359525 -3.8674602513660457 0.11990812487625746 DTDSEEEIREAFR ddPTM_BT-474_Trastuzumab_2h_R1 6 DTDSEEEIREAFR 13 1 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 ;;;;; 295.78 1.0078e-40 23625200000.0 4512130.0 6604360.0 6116140.0 7139910.0 6640750.0 6843610.0 8034700.0 5526770.0 8732710.0 7335960.0 False True 4487837.193424768 6824182.130180076 6977239.34955811 8043821.87392854 7486410.149690975 6370527.348825104 7646030.865465338 5939205.641769402 6580650.632818863 6867772.752168661 0.6534632631820305 0.993652873564458 1.015939169995816 1.1712417058919886 1.090078315029711 0.9275972835317621 1.1133203065070731 0.8647935591482636 0.958192833439468 1.0 22.711410872097044 4.739437103403869 4.643912601421852 1.01437415006556 0.6311808231575987 0.6166050064923009 0.08567427265877003 0.1327569451236803 7.74498868764824 0.021865314046095402 0.16591501207216536 54882.90658108485 -4.739437103403869 -0.3831933269079614 DTDSEEEIREAFRVFDKDGNGYISAAELR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTDSEEEIREAFRVFDKDGNGYISAAELR 29 3 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2 P0DP25 CALM2;CALM1 0 ;; 114.2 0.00010096 198163000.0 46436.0 64379.0 67792.0 79195.0 79536.0 86694.0 98621.0 60798.0 106983.0 85849.0 False True 46185.99373552462 66521.81609707267 77336.5243413729 89221.07887995371 89664.43815319384 80701.04783572473 93850.32546119433 65335.05548598851 80618.47314875452 80370.04332097337 0.5746667766629401 0.8276941674823403 0.9622556010392389 1.1101285403521808 1.115645014587108 1.0041185061133964 1.1677276953352487 0.8129279615423408 1.0030910749517579 1.0 16.29437023909102 4.588466773015043 1.822181544127249 1.0210225863593114 0.5059556314293019 0.702263792569784 0.09177546127759416 0.3671489500108992 1.5820704072873324 0.02594326476256297 0.2925449834692645 38767.40872220806 -4.588466773015043 -0.5150669549300095 DTDSINLYK ddPTM_BT-474_Trastuzumab_2h_R1 1 DTDSINLYK 9 0 O14980 O14980 XPO1 Exportin-1 0 93.649 0.013862 0.0 269100.0 257400.0 204760.0 218940.0 190470.0 303380.0 307660.0 225540.0 361440.0 277190.0 False True 267651.1954998207 265967.4033984142 233588.42819417478 246657.78155157578 214725.22549586123 282408.05467970314 292777.31042466627 242370.9400689139 272367.955047866 259499.49688570146 1.031413157682189 1.0249245435553256 0.9001498307222561 0.9505135251195423 0.8274591206257275 1.0882797772979573 1.1282384510888754 0.9339938727344355 1.0495895302942824 1.0 17.985372215944025 2.7013450115452513 24.998730824080404 1.0348692840571825 0.9488314573541711 0.2892998417730511 0.07272741995462655 859.6080191546454 577421.325495342 0.024748683697207372 0.02333384345265853 502.7418182955603 -2.7013450115452513 -0.08603782670301141 DTDYKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTDYKR 6 1 P49902-2;P49902 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 0 98.133 0.06458799999999999 227090000.0 752360.0 646570.0 610860.0 576050.0 611090.0 478840.0 693430.0 640800.0 895890.0 744820.0 False True 748309.3773550534 668090.6915901812 696863.7783096975 648977.8709362625 688908.689285798 445738.91786811606 659886.1417401568 688619.7499164684 675109.9138109572 697284.9499275158 1.0731758622251086 0.9581315237904254 0.9993959834958978 0.9307211793452951 0.9879873204740923 0.6392493024759125 0.9463651005356609 0.9875729427231318 0.9681980284833859 1.0 19.41138881752824 4.9539999128070775 0.8893923485356358 0.9199054378360302 1.190910618031008 0.15886726770559212 0.10059518923223139 6.063195839363642 2.90300473809583 0.03402209491454928 1.7450809938529768 89949.74009387122 -4.9539999128070775 0.2710051801949779 DTEEPLPVKESDQTLAALLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTEEPLPVKESDQTLAALLSPK 22 1 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 DTEEPLPVKESDQTLAALLS(1)PK;DTEEPLPVKESDQTLAALLS(1)PK 124.28 1.3911e-05 89138000.0 82051.0 105292.0 105138.0 122174.0 100462.0 135396.0 156101.0 125350.0 335920.0 147050.0 True False 81609.24653272316 108796.58056964204 119940.51652412166 137641.21587321753 113255.24021507427 126036.39320790126 148549.79826627072 134704.25351440272 253137.01709738586 137665.14310416102 0.5928098042289143 0.7902986777656834 0.8712482609586332 0.9998261925248181 0.8226863944011042 0.9155287269235528 1.0790661667628827 0.9784920894062631 1.8387880286141556 1.0 17.07080378890831 1.4024710296360754 6.847154423928085 1.4268045468005575 0.8858246276583223 0.4822541703176747 0.22455963365601056 0.1696070301104933 11.796374521649422 0.1416756096489324 0.052479709208040085 25.26219188694632 -1.4024710296360754 -0.5409799191422352 DTEEQNPETVNWEDRPST(ph)PTILGYEVMEER ddPTM_BT-474_Trastuzumab_2h_R1 1 DTEEQNPETVNWEDRPSTPTILGYEVMEER 30 1 A0A0C4DGW2;P57768-2;P57768;E5RGS8;E5RH07;E5RGQ6 A0A0C4DGW2 SNX16 Sorting nexin-16 1 DTEEQNPETVNWEDRPS(0.101)T(0.893)PT(0.006)ILGYEVMEER 166.89 4.2964e-12 209870000.0 146620.0 136520.0 132840.0 133900.0 145980.0 163060.0 150880.0 129930.0 178390.0 160330.0 True False 145830.61421101348 141063.98567191712 151542.7173340213 150851.72627092362 164569.68770875112 151788.0460019526 143581.35798242764 139626.03637117136 134428.17480353237 150097.6021345812 0.971571911457041 0.9398150514452303 1.0096278366801914 1.0050242250750032 1.0964178332522188 1.0112622976205559 0.956586620575651 0.9302349563584582 0.8956050789072618 1.0 17.195541403985814 2.1167042864359757 3.9663109643675973 0.9361085769720924 1.006822510157311 0.3063738460097807 0.04425951581809977 0.27100755594010445 7.89423216971981 0.018968852861914257 0.013426521920600539 130.82907970593678 -2.1167042864359757 0.07071393318521857 DTELAEELLQWFLQEEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTELAEELLQWFLQEEKR 18 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 117.26 0.00021921 499660000.0 110920.0 107810.0 74914.0 86148.0 111420.0 97373.0 172060.0 90356.0 168200.0 134250.0 False True 110322.81904437045 111398.39067747869 85461.240035839 97054.32796704648 125608.6765619197 90641.83370138684 163736.80046697048 97098.82353847135 126749.36376452807 125682.05006279256 0.877792962394006 0.8863508402498403 0.6799796788255867 0.7722210762679057 0.999416197453525 0.7211995162085666 1.30278588219372 0.7725751090944123 1.008492172917312 1.0 16.939419092894024 2.804418485918944 1.5509278724506563 0.9747964308843273 0.8107465897142992 0.18632414568478128 0.1581710423063733 0.6890940120363178 3.3375806895154048 0.060542381654064545 0.061615350768888376 637.4094324492637 -2.804418485918944 -0.16404984117002808 DTFEHDPSESIDEFNK ddPTM_BT-474_Trastuzumab_2h_R1 5 DTFEHDPSESIDEFNK 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ;;;; 349.47 3.5953999999999985e-87 2621650000.0 3591682.0 3018574.0 2736734.0 2385356.0 2633155.0 3381037.0 3176271.0 3272879.0 4472270.0 3390810.0 False True 3572344.783185385 3119045.410823485 3122042.3590816413 2687341.8250239403 2968471.681317552 3147313.8702950035 3022622.6371964714 3517117.850322818 3370138.9838477173 3174405.6027815067 1.1253586435379248 0.9825604541809296 0.983504551638271 0.8465653609826083 0.9351267773458094 0.9914655731256382 0.9521853900925457 1.1079610769465051 1.0616598524444083 1.0 21.598055046500424 1.748474355203649 24.99999999999999 1.0646945552257883 0.9688277465042189 0.22629483245957716 0.06917065335732131 3.3055253677402616 8353.048218534523 0.0328548758624819 0.01821989065758957 56.03693269562606 -1.748474355203649 -0.09586680872156939 DTFNHLTTWLEDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTFNHLTTWLEDAR 14 0 P61019;P61019-2;E9PKL7;H7C125 P61019 RAB2A Ras-related protein Rab-2A 0 ;;; 204.52 1.3532e-08 3027010000.0 1932120.0 2581030.0 2576320.0 2489810.0 2498080.0 2616790.0 2439240.0 2258890.0 2659700.0 2404600.0 False True 1921717.6805987111 2666938.0232844176 2939043.4622251266 2805019.6907140296 2816195.680719807 2435897.4665610795 2321244.6423983052 2427459.842211003 2004252.573154074 2251136.369318364 0.853665600534276 1.1847074480396569 1.3055821505451748 1.2460460987369588 1.2510106980202806 1.0820745911979825 1.0311435033592256 1.0783264289519825 0.8903292579120625 1.0 21.102222024330448 2.4765145718752266 3.4941631871172754 1.015882680960439 1.1809955135484558 0.2846159621846006 0.12348536610034214 0.3264622197007183 8.525235470623365 0.04540019485103235 0.0393053636298122 299.5812109173462 -2.4765145718752266 0.16511283258801668 DTGIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTGIAR 6 0 P14678-2;P14678;P14678-3;J3QLE5;P63162;P63162-2 P14678-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 101.33 0.085259 348830000.0 388610.0 459820.0 427840.0 427360.0 382500.0 307370.0 413480.0 412830.0 443220.0 441890.0 False True 386517.76693862997 475124.8307329398 488076.1531480556 481463.73218179145 431209.1077448785 286122.2353711525 393478.39275300957 443637.4709082641 333994.36984372226 413688.2018789373 0.9343214652559548 1.148509502023414 1.179816467888749 1.1638323983981735 1.0423529261563727 0.691637407283092 0.9511472431794369 1.072395753355546 0.8073577354315344 1.0 18.65818428786323 2.9904601073571313 24.58935902934849 0.9204657473842772 1.1133719554138057 0.4023479241614917 0.11651629267662733 406.6604036556878 1048183.6309026807 0.035804785160349274 0.0405916625252396 978.273090204035 -2.9904601073571313 0.19290620802952851 DTGIFLDLMHLK ddPTM_BT-474_Trastuzumab_2h_R1 4 DTGIFLDLMHLK 12 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;; 149.23 6.549e-05 7113420000.0 4055730.0 4064510.0 4000690.0 3526460.0 3249160.0 3836970.0 4340850.0 3611380.0 5506930.0 4103290.0 False True 4033894.400313966 4199794.758301815 4563952.37737914 3972909.474423913 3662921.266719864 3571729.295155846 4130866.5018426613 3880879.513816062 4149820.8905814015 3841414.5191966896 1.0501065115871764 1.093293821146922 1.1880916143185574 1.034230868491308 0.9535344984029082 0.9297953338039552 1.0753503640910123 1.0102735579360556 1.0802845852337761 1.0 21.873206219869132 3.4965361238430877 23.912756799572275 1.0084993794392916 1.1091743720207463 0.42075707055703915 0.05374212239111208 425.2022140455669 523708.3989247486 0.014782897213973212 0.02250134780310629 3137.156062371559 -3.4965361238430877 0.10067499258145474 DTGKTPVEPEVAIHR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTGKTPVEPEVAIHR 15 1 P60866;P60866-2;E5RJX2;E5RIP1 P60866 RPS20 40S ribosomal protein S20 0 ;; 217.48 1.2417e-12 2874010000.0 2608330.0 3368000.0 3099240.0 3339860.0 3241300.0 3564380.0 3911080.0 3402730.0 5147560.0 3913190.0 False True 2594287.0410927036 3480101.844001004 3535586.0529230013 3762685.933556438 3654060.34230974 3317982.8002480078 3721886.1186234932 3656658.9913128326 3879012.811770121 3663446.8639494902 0.7081546798513828 0.9499528649500254 0.9650982214906088 1.0270889884014751 0.9974377896040695 0.9056997203641588 1.0159519864336182 0.9981471349554829 1.058842384187943 1.0 21.804770259746302 4.890026169882649 1.9002626524888866 0.9961044775032324 0.5278498118904708 0.8367858767924009 0.037960764246556665 0.49455456959360455 1.334324801282792 0.00978093696800663 0.46497337397486954 77629.38934330513 -4.890026169882649 -0.46825466561276163 DTGNLYCTRPVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTGNLYCTRPVDR 13 1 Q02487-2;A0A3B3ISU0;Q02487 Q02487-2;A0A3B3ISU0 DSC2 Desmocollin-2 0 ; 75.02 0.015463 0.0 442890.0 400680.0 422620.0 333620.0 425860.0 583130.0 437880.0 370760.0 567030.0 415370.0 False True 440505.5294497048 414016.39158382517 482121.2225211079 375856.25779317087 480090.7467300231 542819.5956403691 416698.0715359578 398427.99388113205 427293.0543127245 388860.73098385206 1.1328105266252697 1.064690668395153 1.2398300576694863 0.966557504642398 1.2346084561311992 1.39592289061173 1.071586916173497 1.0246033145930522 1.0988331303899863 1.0 18.568894026320486 2.0226643332432652 24.999998615203822 1.0449330072320435 1.1698523601842625 0.23822166680866141 0.10922247332818161 355.43239932796786 392059.62877904106 0.04209876366521238 0.03109041985839906 105.35722742714694 -2.0226643332432652 0.12491935295221901 DTGSEVPSGSGHGPCT(ph)PPPAPANFEDVAPTGSGEPGATRES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTGSEVPSGSGHGPCTPPPAPANFEDVAPTGSGEPGATRESPK 43 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 2 DTGSEVPSGSGHGPCT(1)PPPAPANFEDVAPTGS(0.001)GEPGAT(0.094)RES(0.905)PK;DTGSEVPS(0.001)GS(0.006)GHGPCT(0.993)PPPAPANFEDVAPT(0.001)GS(0.004)GEPGAT(0.117)RES(0.878)PK 161.68 1.2673999999999999e-18 807740000.0 660190.0 597230.0 502740.0 494430.0 530160.0 754470.0 703750.0 649130.0 1059460.0 767440.0 True False 656635.6103940047 617108.4395168417 573521.4221055842 557024.7873049504 597672.73349549 702315.2647313447 669706.9239139274 697571.3768153507 798370.2790366639 718461.3221615596 0.9139470562151539 0.8589306347907664 0.7982634616712423 0.7753023998968909 0.8318787874305251 0.9775268940273111 0.9321405387544733 0.9709240501863629 1.1112223503343097 1.0 19.45455096678029 2.247047016405884 1.074775314926791 1.0316890894971151 0.8320559655612335 0.6883706174299078 0.054757241905941625 0.3148400539546483 0.6975629697051774 0.04016654749904378 0.022835485795738925 176.62290210102276 -2.247047016405884 -0.19963312393588162 DTHDQLSEPSEVR ddPTM_BT-474_Trastuzumab_2h_R1 5 DTHDQLSEPSEVR 13 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;; 192.54 2.63e-06 7574620000.0 4524400.0 5388290.0 4723930.0 4822920.0 4828530.0 5496690.0 5410500.0 1895000.0 5501580.0 4425990.0 False True 4500041.133108099 5567635.975359906 5389018.282864366 5433501.177494866 5443414.67456046 5116716.758116476 5148773.444882857 2036414.5226150253 4145789.326395083 4143519.528919319 1.0860431818169238 1.3436972932071625 1.300589570111158 1.311325104074504 1.313717634626467 1.2348721231805027 1.2426087071503968 0.4914697537690011 1.0005477945644814 1.0 21.982425291114794 1.765879559855156 24.999999999996277 0.7834612553098963 1.2693372671466285 0.6301124574783252 0.150004103384573 9.573637410628406 8766.366445323116 0.06420098534713602 0.03560626781396411 58.328332356296315 -1.765879559855156 0.48587601183673224 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK ddPTM_BT-474_Trastuzumab_2h_R1 3 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487;P43487-2;C9JJ34 P43487 RANBP1 Ran-specific GTPase-activating protein 0 ;; 210.0 3.9302999999999996e-28 2814300000.0 1617970.0 1628780.0 1653240.0 1623020.0 1760000.0 2309510.0 2203710.0 236971.0 2680240.0 1330710.0 False True 1609259.0292933679 1682992.957681698 1886001.8217803168 1828494.1655880085 1984125.5676627085 2149859.0097017647 2097108.1283102804 254654.9793343562 2019730.765375972 1245782.9485218509 1.2917651756293418 1.3509519934259868 1.513908842642372 1.4677469841416255 1.5926735632534685 1.725709131155327 1.6833655740741562 0.2044136016121508 1.6212541420416995 1.0 20.248621300311683 1.772630488978081 24.999999999998238 0.86256010011025 1.5203600673483617 0.36389311059733476 0.3442958637220929 30.611448895755203 22472.72926238816 0.1512414512646666 0.08391148823061102 59.24210601398859 -1.772630488978081 0.6577999672381117 DTHPGSPGS(ph)PGPALRPLPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTHPGSPGSPGPALRPLPAR 20 1 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 DTHPGS(0.198)PGS(0.802)PGPALRPLPAR 134.47 5.3876e-06 435510000.0 182010.0 193620.0 182380.0 216130.0 188970.0 198830.0 204760.0 137420.0 203650.0 181780.0 True False 181030.0783832119 200064.52465423854 208057.51872462206 243492.03583969164 213034.20938705787 185085.35009547533 194854.97654083953 147674.97820462086 153463.18627019113 170178.64477031198 1.0637649549245498 1.175614748397269 1.2225830039100072 1.4308025320587658 1.2518269238457476 1.0875944531423596 1.145002516642631 0.8677644507272693 0.9017769913335395 1.0 17.37669048315893 2.0339334027390055 1.7276747214610741 0.9100877988377312 1.2273974010455544 0.6036389995061247 0.10108323102889304 0.24348771754746154 1.3650170111274809 0.0649955407851977 0.033272286116222 108.12681305924946 -2.0339334027390055 0.3173096022078232 DTIEEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTIEEHR 7 0 P23381;P23381-2 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS 0 ; 146.54 0.002212 739850000.0 823840.0 960350.0 937210.0 960120.0 1017030.0 817560.0 858140.0 878550.0 1111410.0 943920.0 False True 819404.5369772288 992314.6692061655 1069161.0216246455 1081671.0935566786 1146542.742090912 761044.0015292305 816628.4897868532 944111.8621865051 837517.8976309997 883678.2174694303 0.9272657408301174 1.12293666358308 1.2098985812803875 1.2240553995483063 1.29746633947167 0.8612229955250174 0.9241242724364238 1.0683887454984884 0.9477634291239871 1.0 19.753161596797952 2.7335470937618602 24.999861144769874 0.9700920353783141 1.161208822911615 0.47361664519334445 0.10300555627680098 414.50273183792643 2066905.6617101487 0.034840776042675055 0.033793619029998216 541.4359566036884 -2.7335470937618602 0.19111678753330097 DTIIDVVGAPLT(ph)PNSR ddPTM_BT-474_Trastuzumab_2h_R1 7 DTIIDVVGAPLTPNSR 16 0 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 DTIIDVVGAPLT(0.994)PNS(0.006)R;DTIIDVVGAPLT(0.988)PNS(0.012)R;DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(0.998)PNS(0.002)R;DTIIDVVGAPLT(0.988)PNS(0.012)R 390.97 2.0237999999999993e-120 3919103000.0 3335610.0 3590680.0 3171180.0 3357210.0 3369740.0 3689430.0 3637550.0 3399440.0 4523000.0 3783780.0 True False 3317651.446381111 3710193.613188103 3617654.5796093144 3782232.4417775027 3798856.4149862104 3434388.388084041 3461587.8097095685 3653123.474806551 3408367.255094892 3542295.9209429664 0.9365822394358136 1.047397985936884 1.0212739591350368 1.0677347477990107 1.072427741715872 0.9695374030664834 0.9772158755127626 1.0312869269922773 0.9621915647825316 1.0 21.756253308190953 2.7216108958496403 24.785123290297594 0.992485359230403 1.031814265775097 0.2070615518429607 0.039499794891781285 1256.6650111736926 1837586.2829762832 0.01289104026055912 0.01217936776125272 526.7577037904933 -2.7216108958496403 0.03932890654469401 DTILAELLQIHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTILAELLQIHK 12 0 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 0 ; 167.44 4.9208e-05 224865000.0 411200.0 442520.0 410080.0 377460.0 391340.0 491530.0 484180.0 426150.0 630860.0 530480.0 False True 408986.14488861477 457249.0106910112 467815.69952074287 425246.39729815384 441174.82934609347 457551.6880371622 460758.36365278205 457951.4769458533 475393.0060909043 496624.3122332225 0.823532265364706 0.9207141080847447 0.9419911349427641 0.8562738207195373 0.8883472244083591 0.921323577534176 0.9277805220224554 0.922128590295016 0.9572487580262732 1.0 18.921795364787123 -4.999999125512525 0.06162981747891341 1.3763217803405394 0.7549882620678388 0.5858723625649851 0.03055368892432235 285.7571780762229 1.2841273160293571 15.731043890314503 2.5051896210963758 1.000002013583852e-05 4.999999125512525 -0.6213335182727007 DTLENTIGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTLENTIGHR 10 0 H3BS70;Q96DC0;P42126-2;P42126 H3BS70 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial 0 ; 175.15 2.888e-06 241550000.0 444040.0 498280.0 525290.0 483580.0 589460.0 893470.0 479960.0 424990.0 637550.0 590390.0 False True 441649.33797748236 514864.9485833796 599246.2660974711 544801.1784174254 664524.2369968515 831706.5219021495 456742.50117474765 456704.9118554926 480434.3452323118 552710.8047416912 0.7990604384582036 0.9315268385679581 1.0841949550407797 0.9856893944239747 1.2023000659583924 1.5047770276371686 0.8263679617918918 0.8262999527735543 0.8692327725651071 1.0 19.076165289983084 DTLRT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 DTLRTPPR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DT(0.024)LRT(0.976)PPR;DTLRT(1)PPR;DT(0.013)LRT(0.987)PPR;DT(0.01)LRT(0.99)PPR;DTLRT(1)PPR;DT(0.026)LRT(0.974)PPR 117.14 0.0034551 12605330000.0 1809113.0 2146110.0 2016980.0 2063090.0 2105342.0 2106350.0 1963100.0 1818529.0 2029360.0 2112040.0 True False 1799372.9366193498 2217541.973999107 2300953.252095561 2324276.982466618 2373444.8243603045 1960742.9823145652 1868137.3532297437 1954236.8682831526 1529251.4200308118 1977247.7989915838 0.9100391653170877 1.1215296206828884 1.1637151667429193 1.1755112250735709 1.2003780333303622 0.9916526311545593 0.9448170098773216 0.9883621411943576 0.7734242621540636 1.0 20.915062257778033 2.543100504352906 4.671132010470862 0.9360323297966241 1.1203773696991302 0.4692100560569191 0.09441675419380596 0.19939600652829628 8.515586979082537 0.031973703243695785 0.029434915636606575 349.22112281906834 -2.543100504352906 0.18434503990250606 DTLRT(ph)PPRER ddPTM_BT-474_Trastuzumab_2h_R1 2 DTLRTPPRER 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 DTLRT(1)PPRER;DTLRT(1)PPRER 139.86 0.0019215 307824000.0 279199.0 337383.0 327514.0 349450.0 374326.0 389749.0 415210.0 346416.0 439350.0 409465.0 True False 277695.8236059253 348612.58920266957 373625.1243972793 393690.33417008445 421994.1972959716 362806.56900046015 395124.70604376815 372267.32098480477 331078.07948837895 383332.5931393764 0.7244252864899425 0.909425901793634 0.9746761195999644 1.027020246167646 1.1008565534174086 0.9464537466777495 1.03076209306341 0.9711340169017447 0.8636836142133154 1.0 18.548237144011324 4.724980773745706 1.89927182193613 0.9938243964514301 0.64516787970075 0.6565820077068276 0.058168546785401454 0.46999132137928673 1.8081719220527601 0.015220473216569717 0.28694998507831176 53086.09424509209 -4.724980773745706 -0.3486565167506801 DTLS(ph)NPQS(ph)PQPSPYNSPKPQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DTLSNPQSPQPSPYNSPKPQHK 22 1 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 2 DT(0.466)LS(0.534)NPQS(1)PQPSPYNSPKPQHK 85.537 0.0041467 109150000.0 63940.0 52910.0 44964.0 46724.0 38890.0 64231.0 68892.0 73173.0 102520.0 75678.0 True False 63595.75414440183 54671.0773652296 51294.540365905814 52639.25360928036 43842.41098091061 59790.86215351046 65559.43076700292 78633.5408249653 77255.3196976185 70848.16524880448 0.8976344542031026 0.771665394202317 0.7240066159196886 0.7429868285850721 0.6188221081935559 0.8439295773367878 0.9253511440525158 1.1098881749276097 1.0904350088151666 1.0 16.11244287177919 2.1196669246229933 2.207561143662742 1.0747082768648506 0.7509879661842859 0.7779722217178335 0.07264561887691975 0.134981481507534 1.289655553968835 0.037153938577165736 0.02234633944454203 131.72461097108427 -2.1196669246229933 -0.3237203106805647 DTLSNPQS(ph)PQPSPYNS(ph)PKPQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DTLSNPQSPQPSPYNSPKPQHK 22 1 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 2 DTLSNPQS(1)PQPS(0.04)PY(0.009)NS(0.951)PKPQHK 111.79 0.0004163 809170000.0 519660.0 496260.0 437360.0 349030.0 484050.0 598080.0 636930.0 512620.0 765990.0 621340.0 True False 516862.20829965355 512777.71410449495 498936.48639873136 393217.1622131478 545690.8983108718 556736.1373288843 606119.2625911164 550874.3074316169 577222.0282401363 581685.5492440624 0.8885594785212544 0.8815376534123676 0.8577426189238004 0.6759960991366533 0.9381200874252972 0.9571084206104116 1.0420050203736488 0.9470311032266718 0.9923265740231527 1.0 19.149879938319213 3.0157925736803097 24.99926928413332 0.982061375931181 0.8290564670344807 0.6158541131653932 0.06034520183948562 167.47292199108458 265103.7741647121 0.017793137358026564 0.02126115056343699 1037.0329931868348 -3.0157925736803097 -0.15300490889670038 DTLSNPQS(ph)PQPSPYNSPKPQHK ddPTM_BT-474_Trastuzumab_2h_R1 3 DTLSNPQSPQPSPYNSPKPQHK 22 1 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 DTLS(0.01)NPQS(0.989)PQPSPYNSPKPQHK;DTLSNPQS(1)PQPSPYNSPKPQHK;DTLSNPQS(1)PQPSPYNSPKPQHK 246.0 3.8198e-31 1764930000.0 2064570.0 1711020.0 1632390.0 1479750.0 1735750.0 2367980.0 2040490.0 1959600.0 2651820.0 2196540.0 True False 2053454.584515293 1767970.2663665686 1862216.323011763 1667086.198277814 1956787.4739037182 2204287.116225336 1941783.703271233 2105835.3026471743 1998314.4935674816 2056354.936647496 0.9985895663824789 0.859759292940408 0.9055909025354154 0.8106996358302268 0.9515806046080235 1.0719390300484877 0.9442843103909629 1.0240621719129612 0.9717750851053766 1.0 20.971657871378422 3.003334090272493 24.992723550246527 1.0018141695918767 0.890721775402923 0.47645187302271974 0.053708995134588246 79.9224970681642 599097.3831900475 0.01464231036996731 0.01741607244944114 1007.7065704833108 -3.003334090272493 -0.11109239418895378 DTLVQGLNEAGDDLEAVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 DTLVQGLNEAGDDLEAVAK 19 0 E7ETZ4;Q9Y6E2;Q75MG1;E9PFE3;C9JF98;F8WDX8;E7EMS9;Q9Y6E2-2 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 189.81 7.1163e-21 0.0 15654.0 16564.0 12262.0 14594.0 13693.0 22441.0 16814.0 16909.0 23077.0 17918.0 False True 15569.720603322896 17115.322726850565 13988.383016785358 16441.598903643473 15436.722385230381 20889.706490431858 16000.642584282461 18170.835442162228 17389.982565957274 16774.457899628425 0.9281802545564101 1.0203204675383095 0.833909691775805 0.9801567956486793 0.9202516395818862 1.245328261302238 0.9538694293445331 1.083244272386575 1.0366941614454488 1.0 14.033978523134078 DTLVWDTPYHTVWDCDFSTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTLVWDTPYHTVWDCDFSTGK 21 0 Q9NUB1-2;Q9NUB1;Q9NUB1-4;Q5TF43 Q9NUB1-2 ACSS1 Acetyl-coenzyme A synthetase 2-like, mitochondrial 0 ; 189.48 2.1459e-17 231160000.0 173747.0 171214.0 173343.0 156207.0 190126.0 305600.0 194474.0 147450.0 278982.0 221041.0 False True 172811.56545710636 176912.75448895124 197748.18767563405 175982.79018373546 214337.4191349093 284474.5913050208 185066.5496571756 158453.46773592866 210230.62426727425 206933.97413727877 0.8351048501222144 0.8549236790455121 0.9556100611321033 0.8504296644251829 1.0357768463515764 1.374711873635124 0.8943265620289279 0.7657199278007949 1.0159309274551915 1.0 17.65881099878214 3.2423850297715275 24.909357214236394 0.9949954539566419 0.8784813123355659 0.17086784927768883 0.14771078158934167 235.8987993856107 1536454.6402489769 0.047499186322468696 0.0619533057679296 1747.370621970845 -3.2423850297715275 -0.11651414162107598 DTLWHLFNTLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTLWHLFNTLQR 12 0 Q7Z434;Q7Z434-5;Q7Z434-2 Q7Z434 MAVS Mitochondrial antiviral-signaling protein 0 ; 155.66 7.252800000000001e-05 278850000.0 417840.0 591600.0 569560.0 575450.0 471110.0 571790.0 561860.0 455980.0 643740.0 581730.0 False True 415590.3958663879 611291.0483702484 649749.097295733 648301.9109977823 531103.0660122598 532263.5031488803 534680.6852863653 490007.5430195246 485098.90267406206 544603.4933558902 0.7631063717668918 1.122451574086358 1.193068177532111 1.1904108565350806 0.9752105384773798 0.9773413311564165 0.9817797568495573 0.8997510096750556 0.890737772695588 1.0 19.054846711007016 3.0246137978133705 22.710037674907618 0.9461714037275577 1.0805159560391557 0.18128341095102452 0.11731031924676406 124.31304240287893 114695.64335394926 0.034666005359956946 0.04143058448746028 1058.3121883096733 -3.0246137978133705 0.13434455231159803 DTLYEAVR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTLYEAVR 8 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ;; 110.31 0.0080274 1024670000.0 1126730.0 1414650.0 1619510.0 1185160.0 723690.0 879540.0 1269490.0 840470.0 1731610.0 1068220.0 False True 1120663.8108714703 1461735.7700760164 1847522.9309667335 1335201.1344828065 815847.6318533096 818739.4700144565 1208079.9187772546 903190.139220183 1304877.9178852218 1000045.2850508473 1.1206130638518936 1.4616695782948415 1.8474392695854729 1.335140672569561 0.8158106878248297 0.8187023950348685 1.2080252132940457 0.9031492400609241 1.3048188290981995 1.0 19.93163390036321 3.4157643420991075 6.169018690411152 1.0043745530244255 1.4937710870687477 0.49181068721598686 0.21867530575651323 0.15726281322965277 11.650672211328468 0.06092679750105363 0.08320074857840522 2604.7397763912277 -3.4157643420991075 0.48939653404432226 DTNYTLNTDSLDWALYDHLMDFLADR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTNYTLNTDSLDWALYDHLMDFLADR 26 0 Q07021;I3L3Q7;I3L3B0 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial 0 75.32600000000002 0.018623 62823000.0 26054.0 22912.0 30466.0 20300.0 18810.0 33064.0 24066.0 23263.0 35485.0 30369.0 False True 25913.72815887154 23674.61206940352 34755.34798478084 22869.97791859412 21205.34200439519 30778.363504284065 22901.835638952165 24999.00318712047 26740.197224638978 28430.824419791017 0.9114659419032781 0.8327093059223198 1.2224530485506164 0.8044078349931376 0.7458574430094229 1.082570207948627 0.8055283695188923 0.8792922364121943 0.9405354143028236 1.0 14.795168313566627 4.46895820525218 0.0018106828110228087 1.0643846067847587 0.7644253791840642 0.0 0.13828238234950557 25651404.73065521 8322.900442072547 681552.71229874 697279.7109456115 29441.38288180724 -4.46895820525218 -0.2999592276006945 DTPDEPWAFPAR ddPTM_BT-474_Trastuzumab_2h_R1 6 DTPDEPWAFPAR 12 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;;;; 211.79 6.4563e-08 2036289000.0 1260735.0 1399079.0 1307851.0 1393532.0 1385395.0 1455504.0 1487775.0 1287065.0 1614525.0 1478770.0 False True 1253947.3428408264 1445646.4987538836 1491985.0527553214 1569953.0083179441 1561816.8413704971 1354888.4343678763 1415805.6393975741 1383112.3258836425 1216646.9472766044 1384393.6325613072 0.9057737000139633 1.0442452672071676 1.0777173613511615 1.1340365712411782 1.1281595094315293 0.9786872768702045 1.0226900832952768 0.9990744636153129 0.8788302103251155 1.0 20.400822780362773 1.833936354200413 1.4004454309886254 0.9470949376810599 1.0558292691866646 0.24560760532857517 0.06951477907941991 0.5761712562221007 2.122315879892203 0.05487227139645103 0.022828507097108142 68.22387048220732 -1.833936354200413 0.10873433150560474 DTPGFIVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTPGFIVNR 9 0 E9PF18;Q16836;Q16836-3;Q16836-2;A0A0A0MSE2;A0A0D9SFP2;A0A1W2PQV5;A0A1W2PNM1;A0A1W2PQ78 E9PF18 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial 0 87.251 0.03161 71464000.0 88954.0 96491.0 109750.0 110460.0 105530.0 126130.0 108110.0 79398.0 102530.0 99999.0 False True 88475.08154771845 99702.64460495868 125201.84603589917 124444.22467428092 118968.61997468489 117410.92997808341 102880.30627969402 85323.08193487472 77262.85533161159 93616.97820654877 0.9450751695116065 1.0650060118900975 1.337383970668912 1.3292911933102292 1.270801752564608 1.2541627835822433 1.0989492317590877 0.9114060672480254 0.8253081525569561 1.0 16.51448257766079 1.8682405872990515 2.873999047580506 0.8987315603623713 1.2085765148603616 0.5327167068675975 0.11996332731567527 0.21085348846687738 3.091070424671445 0.07077829050586 0.03643832363230383 73.83131221958037 -1.8682405872990515 0.3098449544979902 DTPGHGSGWAETPR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;; 238.43 2.5141999999999998e-17 3480860000.0 682560.0 1524000.0 1344540.0 1508760.0 1526470.0 1450780.0 1458770.0 1225150.0 1326180.0 1441620.0 False True 678885.1727995444 1574725.418722547 1533839.545048817 1699768.8613033537 1720856.9064034626 1350490.9933687772 1388203.7220574368 1316576.9141856437 999360.7089015566 1349614.5773670215 0.5030215175387253 1.1667963914517705 1.1365019100795444 1.2594476154958643 1.275072850621325 1.0006493824358844 1.02859271479247 0.9755206680963454 0.740478597120091 1.0 20.364116030887967 1.6178148556610086 2.424661883179763 0.8691781907131376 1.07846473044128 0.09334891509997034 0.21385918812189095 0.5314844870335595 7.019257033233342 0.15156442094206607 0.05853378761760549 41.47771810312103 -1.6178148556610086 0.20928653972814237 DTPRPDHPPHDGHS(ph)PASR ddPTM_BT-474_Trastuzumab_2h_R1 7 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 DTPRPDHPPHDGHS(0.992)PAS(0.008)R;DTPRPDHPPHDGHS(0.999)PAS(0.001)R;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(0.944)PAS(0.056)R;DTPRPDHPPHDGHS(0.999)PAS(0.001)R;DTPRPDHPPHDGHS(0.997)PAS(0.003)R 195.97 1.0052e-15 5373396000.0 515295.0 556089.0 516017.0 550290.0 511314.0 587272.0 578740.0 173256.0 651785.0 403157.2 True False 512520.7089746571 574598.0862021009 588667.7082998318 619956.6575774944 576426.8071044823 546675.2689295888 550744.1351985027 186185.2424961416 491161.32022153935 377427.36233575543 1.3579320423481223 1.522407073631679 1.5596847686314783 1.6425853540157151 1.5272522997198572 1.4484251103216843 1.4592056383780847 0.4933008601811788 1.3013399907784307 1.0 18.525839492168863 1.8590347073315605 8.286033281944059 0.8897526016766495 1.5129659185279691 0.637762691531742 0.19665908125961723 0.15515759904177243 9.88160065984249 0.07878234055876468 0.04932480089129721 72.2827567204191 -1.8590347073315605 0.6232133168513196 DTPRPDHPPHDGHSPASR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 0 ;;; 111.66 0.00010029999999999997 263867000.0 123271.0 191578.0 183769.0 190624.0 191219.0 174739.0 194523.0 68786.6 177636.0 147414.0 False True 122607.32263269558 197954.5579186532 209642.07785121756 214756.97885488096 215569.6062061903 162659.70422136146 185113.17933997742 73919.80538327737 133859.98800045025 138005.91231252518 0.8884207971832518 1.434391864823658 1.5190804099498771 1.556143322095846 1.562031673817105 1.178643012431278 1.3413423833666933 0.5356278158277755 0.96995835727178 1.0 17.074370549275386 1.7583075320369874 24.999999999837357 0.7990783213927274 1.3727099522818702 0.524711208673162 0.22513929997902746 6.113799445714679 7747.326727825343 0.10354697565749624 0.05742313385652684 57.32017822005363 -1.7583075320369874 0.5736316308891428 DTQLKEYEELLASVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTQLKEYEELLASVR 15 1 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 ; 111.01 0.00079932 99062000.0 82359.0 119775.0 99806.0 106114.0 104020.0 113820.0 117598.0 106469.0 154188.0 128448.0 False True 81915.58829494506 123761.63846948343 113857.81727069641 119548.02151988649 117266.33042515618 105951.89130346032 111909.33547201443 114414.25741862724 116190.43341334764 120250.33867013468 0.68120879492616 1.0291999160932161 0.9468398886012792 0.9941595411870335 0.9751850325081903 0.881094327676721 0.9306363433952488 0.9514672364664459 0.9662378892094101 1.0 16.87568143160914 4.747620531284529 24.89509761731973 0.9587165272547126 0.6812086428174993 0.8244191234771605 0.03906858019302526 454.84333374017865 1249803.7235930928 0.00938309727505245 0.11516395092880041 55926.87218613812 -4.747620531284529 -0.2775078844372133 DTQS(ph)PSTCSEGLLGWSQK ddPTM_BT-474_Trastuzumab_2h_R1 6 DTQSPSTCSEGLLGWSQK 18 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 DTQS(1)PSTCSEGLLGWSQK;DT(0.002)QS(0.998)PSTCSEGLLGWSQK;DTQS(1)PSTCSEGLLGWSQK;DTQS(0.526)PS(0.47)T(0.004)CSEGLLGWSQK;DTQS(0.995)PS(0.004)T(0.001)CSEGLLGWSQK;DTQS(0.933)PS(0.067)TCSEGLLGWSQK 385.34 1.911999999999999e-126 3458600000.0 3535890.0 3031270.0 2978290.0 2716240.0 2828040.0 3706740.0 3292980.0 2891680.0 3610210.0 3215390.0 True False 3516853.1611143113 3132163.9895085916 3397607.3442392484 3060115.7054976407 3188174.130893664 3450501.7885273984 3133685.9769947915 3107471.845253517 2720522.1198355374 3010181.0573661216 1.1683194778295238 1.0405234535125285 1.1287053102420759 1.0165885862610575 1.0591303546648734 1.146277158340287 1.041029066782028 1.0323205767471422 0.9037735830468507 1.0 21.52141883461758 1.5561217153306117 2.408763900729688 0.954229003727471 1.085597758443952 0.5062441120358099 0.05206151996458314 0.20331224565686387 2.546076286839681 0.036890722811357426 0.013279069857458772 35.98501726002309 -1.5561217153306117 0.13136875471648102 DTRPSSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTRPSSEK 8 1 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A087WT27;A0A494C1E2;A0A494C1Q4;J3KN95;A0A494C099;A0A494C163;D6RCQ8;D6RIS6 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ; 112.84 0.0027025 637420000.0 1202310.0 1168690.0 1143660.0 1031140.0 1100290.0 827440.0 1304450.0 1306890.0 1702180.0 1446580.0 False True 1195836.8965492002 1207589.140161977 1304677.3871290786 1161682.2182748332 1240405.4095702264 770241.0203842483 1241348.7700170858 1404416.7680529528 1282700.5470434257 1354258.0259205536 0.8830199811711161 0.8916979756063259 0.9633890751669921 0.8577997663962025 0.9159298935866109 0.5687549976753351 0.9166264819979797 1.0370378031160672 0.9471611188506808 1.0 20.369071210195145 1.9980216544717968 24.999987761080256 0.9933442754718366 0.8481655679775485 0.2995749630963558 0.10160105935759312 97.0197507570208 1226029.1603474868 0.039763258477826025 0.028916583267050995 99.54550507611667 -1.9980216544717968 -0.14517870749428807 DTS(ph)GLER ddPTM_BT-474_Trastuzumab_2h_R1 2 DTSGLER 7 0 Q9H307 Q9H307 PNN Pinin 1 DT(0.004)S(0.996)GLER;DT(0.011)S(0.989)GLER 129.63 0.0038206 1055770000.0 2001180.0 1726020.0 1569130.0 1625950.0 1611270.0 1696270.0 1763830.0 1803060.0 2529400.0 2001280.0 True False 1990405.869231999 1783469.5322988757 1790049.8648775422 1831795.1032875893 1816455.683754483 1579010.8474900785 1678506.8044150649 1937613.4929531622 1906063.2622235257 1873556.5970179886 1.0623676233747041 0.9519165501258419 0.9554287645895735 0.9777100442031651 0.9695227177260676 0.8427879093715566 0.895893301054598 1.0341899978026436 1.0173502445868332 1.0 20.837348129058924 1.6692123307753925 9.07186752161118 1.0189014398555536 0.9487615745642473 0.24084035062505793 0.05375473566147625 0.1705598139785803 22.427961262152987 0.027448488960152857 0.014595344182632307 46.68875903842585 -1.6692123307753925 -0.07013986529130634 DTS(ph)PSSGSAVSSSK ddPTM_BT-474_Trastuzumab_2h_R1 8 DTSPSSGSAVSSSK 14 0 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;Q8NEY8-7;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3;Q8NEY8-5 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 1 DTS(0.997)PS(0.003)SGSAVSSSK;DTS(0.999)PSSGSAVSSSK;DTS(0.999)PS(0.001)SGSAVSSSK;DTS(0.999)PSSGSAVSSSK;DTS(0.999)PS(0.001)SGSAVSSSK;DTS(0.998)PS(0.002)SGSAVSSSK;DT(0.029)S(0.967)PS(0.003)S(0.001)GSAVSSSK;DT(0.163)S(0.837)PSSGSAVSSSK 371.71 3.8493999999999984e-97 20048840000.0 14240270.0 12201670.0 11481370.0 10868292.0 11249210.0 13895050.0 14401450.0 13752570.0 18416520.0 14197980.0 True False 14163601.968562728 12607795.209884737 13097847.098142955 12244216.652848912 12681730.214208513 12934517.898929404 13704796.84461846 14778856.607535442 13878015.414724763 13291852.76089778 1.0655852290381576 0.9485355756403339 0.9854041670303817 0.9211820859819616 0.9540980059240397 0.9731162488483479 1.0310674584761792 1.111873331234315 1.044099394145515 1.0 23.66403888113992 2.1197845391800354 3.8558850432187644 1.0658198872541942 0.9705056456638046 0.3808164407657947 0.04416953746789201 0.18598329096147226 5.185316649771902 0.0174047216185653 0.012278170853259465 131.7602891352277 -2.1197845391800354 -0.09531424159038959 DTSEDIEELVEPVAAHGPK ddPTM_BT-474_Trastuzumab_2h_R1 5 DTSEDIEELVEPVAAHGPK 19 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;;;; 253.02 7.257899999999997e-31 1893380000.0 1335610.0 1236830.0 1149160.0 1086540.0 1123110.0 1386190.0 1404160.0 1335950.0 1809770.0 1483010.0 False True 1328419.2241602195 1277997.138870477 1310951.7393222193 1224095.8525945425 1266131.401305492 1290365.9480402707 1336235.4163878958 1435645.3728166444 1363776.4331755652 1388363.0321312607 0.9568241111411457 0.9205064592570127 0.9442427585455021 0.8816828338589847 0.9119598923358452 0.9294153749249894 0.9624539010784922 1.0340561795374232 0.9822909438045517 1.0 20.40495342555054 2.0339900063156917 3.2650813386719073 1.0080744249526534 0.9224156723121345 0.7257905243847356 0.02233718243700604 0.11921486082339583 2.5631937170142964 0.010210214031483037 0.006387815822267098 108.14090663739674 -2.0339900063156917 -0.08565875264051892 DTSFEQHVLWHTGGK ddPTM_BT-474_Trastuzumab_2h_R1 5 DTSFEQHVLWHTGGK 15 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 233.4 7.245900000000001e-18 20783600000.0 19980810.0 20352500.0 19282250.0 19385150.0 19289780.0 24578600.0 24328300.0 9592130.0 27352800.0 20954780.0 False True 19873235.539036684 21029920.65915395 21997023.1956785 21839308.002395783 21746219.143516313 22879539.233801004 23151447.185868833 10307943.448449193 20612068.94874186 19617428.00011025 1.0130398102608047 1.0720019290518492 1.1213000601075165 1.1132605152047987 1.108515302994567 1.1662863874750768 1.1801469176152308 0.5254482620449155 1.0507019038696623 1.0 24.225632569442453 1.7701524003551985 24.99999999999991 0.8106816069247825 1.1117315758016009 0.39456336736382813 0.13924402098108418 21.47925885201175 17006.20613996575 0.060374903535794625 0.033489899623993694 58.905032556061784 -1.7701524003551985 0.30104996887681834 DTSLYRPALEELRR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTSLYRPALEELRR 14 2 Q13200;C9JPC0;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;;; 246.63 5.3374e-18 2711490000.0 1125170.0 1400080.0 1334530.0 1397980.0 1147720.0 1216850.0 1364220.0 1124210.0 1716200.0 1320840.0 False True 1119112.2097381384 1446680.8164337673 1522420.224057296 1574964.1246618815 1293875.3389305922 1132732.023656788 1298227.4667735097 1208104.2588227093 1293265.5059018028 1236542.8603719843 0.9050330931525336 1.169939888697888 1.2311908247153782 1.2736834081012698 1.046365136539918 0.9160475224579218 1.0498847297399534 0.9770015237961749 1.0458719607282798 1.0 20.23788081582474 3.0139779089617336 24.351534049300188 0.9973080318545644 1.1537951148104657 0.3369134272164359 0.09728932707678487 188.10407782246207 327701.0416199978 0.028416112582790035 0.0339471526104658 1032.7088741441619 -3.0139779089617336 0.1564870829559013 DTSNHFHVFVGDLSPEITTEDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTSNHFHVFVGDLSPEITTEDIK 23 0 E7ETJ9;Q01085;Q01085-2;A6NKZ9;E7ETC0;C9JTN7;P31483-2;H7BY49 E7ETJ9;C9JTN7 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 0 ; 176.54 1.4235999999999999e-13 287920000.0 162657.0 214173.0 200863.0 212990.0 188024.0 251890.0 248440.0 63852.0 311990.0 197780.0 False True 161781.2727848918 221301.6188346873 229142.76446750597 239954.5121616433 211967.74189443927 234477.43718528037 236422.00806703523 68616.9604738863 235104.2449518138 185157.51107202307 0.8737494463401038 1.1952073537465342 1.2375558687347736 1.2959480324203816 1.1447968849180927 1.266367407013117 1.276869659233382 0.37058696715357925 1.2697526748475374 1.0 17.49839354928563 1.7979687042849435 24.999999999971713 0.8115521735453322 1.1927447496641366 0.24006474869151462 0.23856455844699548 185.70180730060483 78165.43975339195 0.09858365887252578 0.05917330719519159 62.801310190107735 -1.7979687042849435 0.3811925761188044 DTSPDKGELVS(ph)DEEEDT ddPTM_BT-474_Trastuzumab_2h_R1 3 DTSPDKGELVSDEEEDT 17 1 Q9UPU7 Q9UPU7 TBC1D2B TBC1 domain family member 2B 1 DTSPDKGELVS(0.995)DEEEDT(0.005);DTSPDKGELVS(1)DEEEDT;DTSPDKGELVS(1)DEEEDT 257.72 1.0174e-26 1377240000.0 3234440.0 2811290.0 2510960.0 2305210.0 2347000.0 3434810.0 3372010.0 2979980.0 4460860.0 3452340.0 True False 3217026.1344200647 2904862.0881893067 2864481.342344431 2597049.349641492 2645876.5382411205 3197369.6693730294 3208892.993970878 3202361.2396318293 3361540.825461547 3232008.7055030214 0.9953643159879346 0.8987791657996792 0.8862851568026983 0.8035403324315286 0.8186477139545091 0.9892825053128683 0.992847880795375 0.9908269226438925 1.0400778994617113 1.0 21.6239996533573 2.642850251447894 6.69865178632952 1.001384586018851 0.877810412418194 0.5977205399939893 0.05009948219057294 0.18872063123888613 11.273315960803657 0.017471659129528493 0.01644993905994819 439.3900837542154 -2.642850251447894 -0.12357417360065703 DTSS(ph)SPTTGSTVQSVDLIFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 DT(0.009)S(0.062)S(0.449)S(0.449)PT(0.028)T(0.003)GSTVQSVDLIFTR 113.47 0.00020999 120950000.0 85634.0 96981.0 78940.0 92003.0 84724.0 98821.0 101690.0 76772.0 111540.0 103480.0 True False 85172.95605883175 100208.9539587475 90054.06584121975 103650.57036671997 95513.09920150875 91989.73686961221 96770.86620647575 82501.116480317 84052.46155942611 96875.81780631472 0.8791972856334418 1.0344062762814221 0.9295825096544341 1.0699323392959645 0.9859333460541156 0.9495634612708889 0.9989166377924282 0.8516172389405033 0.8676309884420637 1.0 16.563848963818625 1.7483812255272653 24.99999999999996 0.8934586675298251 0.9812313579472383 0.20878277724201588 0.06235427607910823 2.912929326975134 7430.923817115648 0.026903174400471075 0.014919120395618287 56.024917479871895 -1.7483812255272653 0.0877726904174132 DTSSDKDLDDALDKLSDSLGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTSSDKDLDDALDKLSDSLGQR 22 2 E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 E7EVY3 CAST 0 47.931 0.085381 41143000.0 71954.0 48775.0 49305.0 43306.0 51037.0 73028.0 66166.0 63867.0 103470.0 65683.0 False True 71566.60765884096 50398.44638988984 56246.715433257414 48788.53515973578 57536.25943000089 67979.74624942103 62965.29780133412 68633.07985005458 77971.2049269662 61491.05470595447 1.1638539621912003 0.8196061464694558 0.914713785642886 0.7934249199828955 0.9356850310201198 1.105522528024523 1.023974919643668 1.1161473840098 1.268008904706848 1.0 15.908088931952506 2.7695231035131926 4.6751288882429 1.1045686654385178 0.9096719977478577 0.3729440137491322 0.11434647411006928 0.20457848817733393 11.362566264712363 0.03522826344526992 0.036337307574648384 588.1974041216012 -2.7695231035131926 -0.19489666769066016 DTSSS(ph)PTTGSTVQSVDLIFTR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 DT(0.004)S(0.022)S(0.149)S(0.801)PT(0.018)T(0.005)GSTVQSVDLIFTR;DTSS(0.005)S(0.995)PTTGSTVQSVDLIFTR;DTSS(0.001)S(0.993)PT(0.006)TGSTVQSVDLIFTR 379.3 6.2492e-113 366870000.0 216463.0 238144.0 211243.0 218694.0 223012.0 241083.0 249253.0 230779.0 272647.0 256874.0 True False 215297.5872593001 246070.47907891215 240984.17824292867 246380.63797679887 251411.25630431605 224417.49965833907 237195.68015107364 248000.9008520168 205456.80013262338 240480.08139910403 0.8952824117769209 1.0232468221371325 1.0020962103842106 1.0245365709432799 1.0454556354173488 0.933206186361409 0.986342314802449 1.0312741887359524 0.8543609888074034 1.0 17.875557877135662 -0.03904471270971935 7.935528092086017 0.9999999941430376 0.9853790102680096 0.0 0.06080161950833404 0.0 0.0 0.05529958342066364 0.013034236811180816 0.914019133951545 0.03904471270971935 -0.014620983875028082 DTTALSFFHMLNGAALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTTALSFFHMLNGAALR 17 0 P42704 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 ; 188.47 4.0929e-10 349930000.0 102847.0 148779.0 178535.0 145512.0 161946.0 225912.0 157736.0 138116.0 160491.0 160605.0 False True 102293.283179376 153731.01907619523 203671.17614596093 163933.80428031852 182568.86317085524 210295.23517964632 150105.7070699642 148422.91725883714 120940.14351922036 150355.05139914172 0.6803448386168416 1.022453304000352 1.3546014866190492 1.0903112516328421 1.21425160958641 1.3986575989481305 0.9983416298497642 0.9871495229303908 0.8043636871112847 1.0 17.19801381262522 1.8309777034934127 2.903473343128879 0.9182319047823937 1.1360990885795665 0.16238512292993668 0.19404949232069776 0.44980688021471277 6.870821413544168 0.11073562838405597 0.055579323286312245 67.76067186572611 -1.8309777034934127 0.21786718379717285 DTTDKGQQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DTTDKGQQLR 10 1 Q13144;A0A3B3IUB1 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 0 66.758 0.059291 201060000.0 244830.0 270500.0 299200.0 274410.0 291420.0 304910.0 301080.0 333830.0 346440.0 334150.0 False True 243511.86248317035 279503.42897929705 341324.75930697966 309150.27786410897 328530.60961833317 283832.28938093537 286515.6101627072 358742.08975439175 261064.5040581638 312824.26091979176 0.7784302335348819 0.8934838626565534 1.0911070589710286 0.9882554407868487 1.050208218033858 0.9073218571551586 0.9158995831086448 1.146784743291932 0.8345404646383895 1.0 18.254992878870407 4.48342088443582 4.677642743757026 0.9998306945603677 0.7982967093175889 0.3671820874298466 0.08730999950779936 0.17300944960944575 10.002511717919486 0.02073690031463906 0.07565710703693804 30438.334434046417 -4.48342088443582 -0.20153398524277877 DTTINEIEDTFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTTINEIEDTFR 12 0 Q16864;Q16864-2 Q16864 ATP6V1F V-type proton ATPase subunit F 0 ; 253.71 1.0051e-20 265420000.0 274720.0 322130.0 286170.0 282540.0 285960.0 309080.0 289270.0 287070.0 345680.0 298330.0 False True 273240.93804426136 332851.9023183031 326460.24856577 318309.53503052145 322375.3109822888 287714.0270960596 275276.9049812889 308492.62111192325 260491.79587468537 279290.32398683677 0.9783401520818154 1.1917774220276631 1.1688920829966039 1.1397084241469235 1.1542659494264564 1.0301610989918142 0.9856299389529262 1.1045589288888604 0.932691803125133 1.0 18.091406066751354 2.712489844863387 9.183747088781061 1.0220625717475875 1.133295073021574 0.41669271433635624 0.06771314273081472 0.39431020859149585 133.25281692523353 0.021235398726327615 0.020255936534636795 515.8101037094978 -2.712489844863387 0.11123250127398654 DTTKLEPAS(ph)PPEDTSAEVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTTKLEPASPPEDTSAEVSR 20 1 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 DTTKLEPAS(1)PPEDTSAEVSR;DTTKLEPAS(1)PPEDTSAEVSR 150.48 5.2633e-08 338460000.0 290650.0 334580.0 321820.0 350580.0 350810.0 418290.0 448970.0 353410.0 606510.0 442040.0 True False 289085.1726942509 345716.29304211866 367129.458690415 394963.3920542225 395483.57408622396 389374.59684874746 427251.6058680442 379783.24877961766 457043.73731762107 413828.62875051546 0.6985625271192425 0.8354093192777641 0.8871533605562753 0.954412925095943 0.9556699237564079 0.9409078294665046 1.0324360766389147 0.9177307281188061 1.104427546971765 1.0 18.65867392902986 5.745039444706192 0.5216059622619837 0.9985707340949684 3.9442890574398634e-16 0.8053099505627767 0.046616378620305696 4.557449063534545 0.4273586902387096 0.023134566005691554 3.4866192776394596 555954.7494521426 -5.745039444706192 -0.998570734094968 DTTLIRHS(ph)PQPSPSSSFNEGLLTGGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTTLIRHSPQPSPSSSFNEGLLTGGHR 27 1 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 DT(0.076)T(0.076)LIRHS(0.848)PQPSPSSSFNEGLLTGGHR;DT(0.085)T(0.085)LIRHS(0.828)PQPS(0.001)PSSSFNEGLLTGGHR 309.19 3.525599999999998e-82 1850250000.0 355420.0 468120.0 417750.0 508600.0 481270.0 452900.0 448420.0 388690.0 493200.0 444230.0 True False 353506.458210874 483701.0912154837 476565.56885190774 572988.707852067 542556.8817892221 421592.08901192347 426728.2114692484 417696.02152782714 371657.4685414107 415878.8610755626 0.8500226659672516 1.163081696349068 1.1459240020504884 1.377777909582085 1.3046031731116117 1.013737721416244 1.0260877659557563 1.0043694465440367 0.8936676117180259 1.0 18.665803829782906 2.5934936308781547 7.159206282825754 0.989662256736433 1.1780891405845377 0.3173055983185007 0.13254873161740757 0.3312033124555824 18.443358855814026 0.04524452281115312 0.042558080733158844 392.187394687802 -2.5934936308781547 0.1884268838481047 DTTS(ph)PMELAALEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTTSPMELAALEK 13 0 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 DTT(0.002)S(0.998)PMELAALEK;DT(0.003)T(0.159)S(0.837)PMELAALEK 286.59 6.302499999999999e-33 165927000.0 471080.0 431640.0 405170.0 389550.0 380230.0 493440.0 458010.0 404470.0 581070.0 462890.0 True False 468543.7576219088 446006.8764681102 462214.4141992276 438866.99005853897 428650.03670022223 459329.65423281846 435854.3065318902 434653.6052570444 437873.08443908667 433347.9638999328 1.0812183202736896 1.0292118888808268 1.0666126362738848 1.0127357842158469 0.9891589955622928 1.0599557226462133 1.0057836723389708 1.0030129167917656 1.010442233300071 1.0 18.72516640052497 7.999999999999992 0.3374082734125729 1.0045135873480702 1.7711017666853712 0.4922402718291714 0.021671764692402794 50.4762546087176 0.7184897359025062 0.0185011375651283 24.30587830068199 99999999.99999815 -7.999999999999992 0.7665881793373011 DTTVISHS(ph)PNTSYDTALEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DTTVISHSPNTSYDTALEAR 20 0 Q4VCS5;E7ERM3;Q4VCS5-2;A6NP16 Q4VCS5 AMOT Angiomotin 1 DTTVISHS(1)PNTSYDTALEAR;DTTVISHS(1)PNTSYDTALEAR 171.29 5.178e-12 615660000.0 156128.0 169307.0 150993.0 145036.0 159057.0 165925.0 154982.0 159713.0 177151.0 180213.0 True False 155287.42419545146 174942.28114675713 172251.50194531653 163397.542729124 179311.96614529943 154454.99529543694 147484.92857126603 171631.5950661812 133494.50975178299 168711.6520518884 0.920430938271482 1.036930638868692 1.0209816562778926 0.9685018239218591 1.0628309542612435 0.9154969050266503 0.8741834175502357 1.0173072990441392 0.791258387480705 1.0 17.36420009107924 2.71170766273347 24.728603842910815 0.9249600677845258 1.0030801248474557 0.25996828780721526 0.06911294758107206 932.1001296002785 858360.3431292975 0.02125515200148197 0.020044099668554485 514.8819446867911 -2.71170766273347 0.0781200570629299 DTVLEPYADPYYDYEIER ddPTM_BT-474_Trastuzumab_2h_R1 1 DTVLEPYADPYYDYEIER 18 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 0 134.56 2.3905e-05 111760000.0 102360.0 119520.0 115810.0 107870.0 111740.0 112530.0 118610.0 122950.0 135940.0 120040.0 False True 101808.90513326525 123498.15094863443 132115.04136143465 121526.33093983986 125969.42666513126 104751.06596712701 112872.38116579891 132125.15332744963 102439.40850267494 112378.94442858547 0.9059428850389561 1.0989438597825145 1.175620949575577 1.0813976902681033 1.1209344179699274 0.9321235975275972 1.0043908290803267 1.1757109305419084 0.9115533966220255 1.0 16.778012228732173 DTVTISGPQAPVFEFVEQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTVTISGPQAPVFEFVEQLR 20 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 157.86 4.6213e-09 132419000.0 29242.4 30686.8 32063.9 29661.8 31197.2 38046.7 33078.1 29619.1 42138.8 32644.7 False True 29084.962167536072 31708.191587437654 36578.218415585085 33416.98083870713 35169.978499708566 35416.621181298244 31477.9859323869 31829.427644742267 31754.25737099104 30561.287297466228 0.9516929664787859 1.0375280098252442 1.1968808139380211 1.0934415331869107 1.150801605880798 1.1588720343018588 1.0299954195645638 1.041494991193685 1.0390353345365697 1.0 14.899417693163826 2.2015363463820097 24.562190185747117 1.0321650688860489 1.1021046858253576 0.21653714649762656 0.06528313008790146 238.06822687739725 157934.70778448106 0.025723937893553563 0.01899901571940133 159.0509789030593 -2.2015363463820097 0.06993961693930872 DTVTISGPQAPVFEFVEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTVTISGPQAPVFEFVEQLRK 21 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 234.22 1.4492e-29 2291200000.0 464670.0 498900.0 468080.0 463180.0 470240.0 592830.0 582510.0 515640.0 793770.0 619780.0 False True 462168.2683496909 515505.5849085809 533981.5953757043 521818.5405090847 530122.2766691542 551849.057471713 554331.7658957039 554119.6751668657 598156.0194730647 580225.1097796462 0.7965326914672995 0.8884579040440976 0.9203007356549877 0.8993380874317165 0.9136493194347971 0.9510947530024862 0.955373624051231 0.9550080922511358 1.0309033673158823 1.0 19.146253205289355 7.999999999999974 0.21080491149041974 1.012178345382352 0.038598974179126444 0.8383221900925163 0.024664057587322465 19.97370666854453 0.24923077251538994 0.0413911642971818 6.534043526476565 99999999.99999407 -7.999999999999974 -0.9735793712032257 DTWHQVYR ddPTM_BT-474_Trastuzumab_2h_R1 3 DTWHQVYR 8 0 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;C9JMB8;A0A2R8YE78;A0A2R8YFD1;H7C141 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 ;; 103.56 0.0047486 421020000.0 174033.0 353147.0 337386.0 421234.0 346403.0 296236.0 297644.0 194744.0 245148.0 243667.0 False True 173096.02566488387 364901.28441313026 384887.0161883175 474562.1812099051 390515.36875855963 275757.90258453594 283245.82260950224 209276.78616999474 184734.56021490195 228115.96344618578 0.7588071568946488 1.5996306391736286 1.6872427969255872 2.080354982793029 1.7119160047327642 1.2088496500578718 1.2416747093472131 0.9174140336713641 0.8098274115677231 1.0 17.799407883729568 2.2281078073337834 1.6375848127915624 0.9135352850591636 1.5921643875491482 0.41887652903927486 0.32338499121017006 0.3677994871620364 1.951563974647472 0.18454473347006184 0.1119331080240718 169.0860611281595 -2.2281078073337834 0.6786291024899846 DTYGVRPLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DTYGVRPLFK 10 1 P08243-2;P08243;P08243-3;F8WEJ5;C9J057;C9JT45 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ; 128.91 0.00028930000000000004 2978400000.0 2652000.0 2839600.0 2657900.0 2575500.0 2615900.0 2868200.0 2927000.0 2888200.0 3930500.0 3011800.0 False True 2637721.9266648963 2934114.369425555 3032109.217119053 2901558.0359280366 2949019.3593459544 2669928.0850165603 2785409.827774163 3103732.1499824356 2961880.9410016537 2819584.345468293 0.9355002736145522 1.0406194707887841 1.0753745395105259 1.0290729697770857 1.0459057073733908 0.9469225807370282 0.9878795902136936 1.1007764867792773 1.0504672242779556 1.0 21.427051069916445 1.7510916489003125 24.9999999999987 1.0598833621945418 1.0123737478550476 0.12831323458112842 0.04723394681312911 6.662773468638065 13313.751597509741 0.02232464491476512 0.012380248579983943 56.375661248880846 -1.7510916489003125 -0.04750961433949419 DTYYDTPELSLMQADHWLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DTYYDTPELSLMQADHWLR 19 0 G3V5B9;G3V5Q5;Q9BU02-2;Q9BU02 G3V5B9 THTPA Thiamine-triphosphatase 0 ;;; 265.22 2.1379999999999998e-31 470963000.0 382936.0 424102.0 396187.0 399972.0 390734.0 436350.0 435918.0 381429.0 480559.0 419355.0 False True 380874.3151241897 438217.9786949272 451966.68588086305 450608.4141899472 440491.6588381363 406186.1515574142 414830.98097152566 409893.16883721657 362131.6736106883 392591.40487212146 0.9701544924251504 1.116218983035728 1.1512393808725432 1.1477796217589724 1.1220104499781838 1.034628233111015 1.0566481482360732 1.0440706641826016 0.9224136573459758 1.0 18.582669062207515 1.7668594815552179 1.1262979351680422 0.9693301909936789 1.1022527276409566 0.42493584387046357 0.0559446614992289 0.45651329267008645 1.0778826191044482 0.04795191057491201 0.019216124410285914 58.460090260037504 -1.7668594815552179 0.1329225366472777 DVACGANHTLVLDSQK ddPTM_BT-474_Trastuzumab_2h_R1 3 DVACGANHTLVLDSQK 16 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;; 189.42 1.0206e-09 1713480000.0 1932128.0 1780199.0 1642685.0 1441587.0 1441586.0 1913230.0 1833136.0 1794410.0 2572518.0 1868626.0 False True 1921725.6375276034 1839451.847561981 1873960.7695260223 1624091.7663907532 1625163.4321503476 1780972.9133589813 1744460.2084204368 1928317.9860293542 1938555.408875124 1749368.6888687934 1.0985252278467739 1.0514946673427878 1.0712211676417935 0.928387352948995 0.9289999543785356 1.0180660741736633 0.9971941418183662 1.1022936435865192 1.1081457106269952 1.0 20.73840294637546 -0.09704072658586438 7.59527133521077 0.9999982552527619 1.032296621119035 0.024694109397237263 0.06310674377592526 4498353.029604816 592256.9783316054 0.06627132641041568 0.016073157600680767 0.799759252923171 0.09704072658586438 0.032298365866273104 DVACGANHTLVLDSQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVACGANHTLVLDSQKR 17 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 113.88 0.00025351 1936340000.0 838600.0 847870.0 797410.0 809840.0 798460.0 853090.0 904150.0 718200.0 1193080.0 924280.0 False True 834085.070777219 876090.8404017627 909678.3967880287 912365.6609652351 900139.1481567988 794117.8962578542 860412.8103115843 771795.7309457049 899061.4204529328 865291.6590840808 0.963935179567206 1.012480394563277 1.0512968514580756 1.0544024681007356 1.0402725355166422 0.9177459275389702 0.9943616135423508 0.8919486543562175 1.0390270274933628 1.0 19.722826970414026 2.753269426924358 24.891746922753953 0.9583702060450487 1.0269634474978988 0.2538108472661663 0.04615253861389487 859.162556135696 1453960.8970551495 0.01386911059052462 0.014655812611948945 566.5906806601661 -2.753269426924358 0.06859324145285006 DVAEAKPELSLLGDGDH ddPTM_BT-474_Trastuzumab_2h_R1 4 DVAEAKPELSLLGDGDH 17 1 H7C5G1;Q2TAA2-2;Q2TAA2 H7C5G1 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog 0 ;;; 222.64 3.0076000000000002e-15 2177520000.0 1880140.0 1707220.0 1597880.0 1482130.0 1415060.0 1945090.0 1977820.0 1738050.0 2514600.0 1869110.0 False True 1870017.535143191 1764043.785663716 1822847.614978064 1669767.5060337868 1595259.5032822697 1810630.506549356 1882145.2905938833 1867752.11663907 1894910.5239136866 1749821.7995744215 1.0686902721168536 1.0081276768255794 1.0417332870246578 0.9542500307402132 0.9116696932626264 1.0347513712480458 1.075621123849094 1.0673956154239996 1.08291628574667 1.0 20.738776575975674 2.483693509551143 24.251485009284064 1.0621544640581795 0.9951972473080808 0.2734906411573498 0.045706237824631527 252.4736213568213 931630.3992272904 0.016128796443206087 0.013975875272304211 304.57447869537543 -2.483693509551143 -0.06695721675009869 DVAIKEPLVDVVDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVAIKEPLVDVVDPK 15 1 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ; 180.49 5.7205e-07 2087600000.0 2409150.0 1902750.0 1750860.0 1575930.0 1657610.0 2302450.0 2378440.0 2263280.0 3867100.0 2371120.0 False True 2396179.4040817283 1966081.8835133347 1997365.8692520664 1775442.576416255 1868696.8080757838 2143287.050884309 2263385.7706768634 2432177.4463029695 2914105.0214851717 2219793.0915820356 1.0794606998141358 0.8857050195214896 0.8997982185035784 0.7998234534331782 0.8418337795366201 0.9655346072623368 1.0196381722513423 1.0956775455903274 1.31278227350834 1.0 21.08199377758422 1.9735777831062855 1.7153231934123863 1.1565475197815465 0.8980814693293058 0.5084916560893882 0.09965908206545825 0.2777219537415064 1.5211751963673725 0.06262231357624398 0.03035627748141688 94.09743455405972 -1.9735777831062855 -0.2584660504522407 DVCLYPR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVCLYPR 7 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;; 118.69 0.011517 1982170000.0 1526950.0 2039900.0 2231290.0 1758650.0 1129640.0 1362750.0 1718730.0 1323390.0 2621160.0 1609920.0 False True 1518729.0708600932 2107796.8383544083 2545436.237279648 1981294.9096815547 1273492.9580991499 1268546.3000684464 1635588.4637137977 1422148.0818382567 1975210.2397445333 1507173.5272781432 1.0076670292921204 1.398509727118782 1.688880670480286 1.3145765061702241 0.8449544362678628 0.8416723602884387 1.085202489369332 0.9435861605176699 1.31053936656626 1.0 20.523414099419387 3.3534773858682416 6.199216355325135 0.9968854111992239 1.3887352105937676 0.4244621396350793 0.19816041241951 0.19035227813786784 9.615794142658915 0.05584819087696492 0.07580868287467658 2256.718482933857 -3.3534773858682416 0.3918497993945437 DVDAS(ph)PSPLSVQDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVDASPSPLSVQDLK 15 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 DVDAS(0.988)PS(0.012)PLSVQDLK 101.36 0.0030123000000000003 0.0 44000.0 36719.0 28663.0 30792.0 28140.0 34701.0 35813.0 36072.0 52404.0 39864.0 True False 43763.10888885954 37941.16971789576 32698.50125673779 34690.26404282513 31723.462201152623 32302.201547367586 34080.58837105436 38763.87580990452 39489.73637762384 37319.845390712544 1.172649790766563 1.0166486307935734 0.8761692583237543 0.9295393289988867 0.8500427016519033 0.8655502510577481 0.9132028285287508 1.0386933655290904 1.0581430861836125 1.0 15.187655388930056 -0.3000441635105795 7.0135006672749975 0.9999999997964898 0.9629557097627622 0.005679274800736822 0.0974743192519595 0.0 0.0 0.09916582437480466 0.023373609133273163 0.5011362703679181 0.3000441635105795 -0.037044290033727556 DVDDDGEEKELMER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDDDGEEKELMER 14 1 Q5STZ8;Q8NE71;Q8NE71-2;A0A0G2JIC2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 ; 145.43 7.8274e-06 1292010000.0 367020.0 298550.0 241290.0 234450.0 248500.0 384270.0 366220.0 351210.0 586620.0 338680.0 False True 365044.0050997556 308487.05627271405 275261.5346697229 264131.3459613002 280145.0020251037 357706.31937428104 348504.539503742 377419.07360824395 442055.3613052766 317065.1524414638 1.15132174661531 0.9729453202198454 0.8681544867045626 0.8330506961343341 0.8835565809359128 1.1281792294734136 1.0991574975054457 1.190351795843987 1.394209858451374 1.0 18.274419798858915 2.5851543332995237 3.2601564249487325 1.180412478311414 0.9337614222631616 0.4432729378099144 0.12332917657625327 0.23454854613201634 4.709575128871353 0.04377901877261383 0.040227961173559645 384.72847700426684 -2.5851543332995237 -0.24665105604825244 DVDDFFEHER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDDFFEHER 10 0 G3V5X9;Q9UNH7;A0A0A0MRI2;Q9UNH7-2 G3V5X9;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed 0 ; 179.57 2.0916e-06 1147890000.0 1056740.0 1114180.0 1057660.0 1034270.0 1022240.0 1121450.0 1133610.0 1021180.0 1307430.0 1050190.0 False True 1051050.629254852 1151264.807763967 1206569.3346544774 1165208.4759539072 1152416.2047088232 1043926.8011093439 1078772.9534892624 1097385.6370469695 985231.3951644279 983165.9750871058 1.069046992967522 1.1709770648460125 1.2272285303074884 1.1851594801688219 1.1721481763104367 1.061801188773701 1.097243986086567 1.116175360879168 1.0021007847399714 1.0 19.907075462947947 2.7408136017318827 24.64152071318308 1.0704593502402477 1.1698358824933146 0.522653457848081 0.05119914674661322 149.08011830129993 1630536.2553380015 0.01628166993053688 0.01650911683076451 550.571341638494 -2.7408136017318827 0.09937653225306686 DVDDGSGS(ph)PHS(ph)PHQLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 DVDDGS(0.17)GS(0.83)PHS(0.997)PHQLS(0.003)SK 95.153 0.00096715 874910000.0 266400.0 214560.0 213140.0 197150.0 201040.0 282590.0 242880.0 170280.0 335780.0 263510.0 True False 264965.7319998228 221701.49989574103 243148.25935390903 222109.16978575484 226641.2523425631 263055.21844530717 231130.96650829798 182987.15826431985 253031.51822148162 246692.56619773895 1.0740726244155925 0.898695503122838 0.9856326970104606 0.900348045379369 0.9187194240822664 1.066328112353627 0.9369190570705426 0.7417619472069726 1.025695756144762 1.0 17.912354716741877 1.9895720639418262 24.730755115583356 0.8801797135992228 0.968251337160313 0.0010360320959628133 0.09365515979365853 795.885310013365 1887509.8279785395 0.03557325598665315 0.02464254047098957 97.6274765541004 -1.9895720639418262 0.08807162356109022 DVDEAHYAYSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVDEAHYAYSFK 12 0 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 124.86 0.00031556 376560000.0 708940.0 696200.0 671290.0 649490.0 623060.0 742660.0 776220.0 727340.0 993470.0 802810.0 False True 705123.1458106389 719372.5961382133 765801.7970427213 731715.36740629 702402.9978340496 691321.662233596 738671.2731516429 781617.8041576842 748642.6303159668 751573.9784797801 0.9381952622107833 0.9571547402336879 1.0189306960729534 0.9735773035760785 0.9345759937761691 0.9198318223203291 0.9828324214281131 1.0399745421451048 0.9960997210550815 1.0 19.519555592062186 1.9947135246312548 24.816727764021742 1.015200654031361 0.9589041829583522 0.4437079167770561 0.027529191605463806 196.01021345617895 920148.3160704534 0.011365081128148673 0.008156002534896182 98.79012265311242 -1.9947135246312548 -0.056296471073008725 DVDEIEAWISEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVDEIEAWISEK 12 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;;; 237.36 9.7877e-16 326582000.0 547982.0 511469.0 483654.0 459097.0 471967.0 603869.0 562717.0 552316.0 788040.0 590510.0 False True 545031.7257985236 528492.9364754609 551748.2792040706 517218.6331277247 532069.1998824229 562124.9573847237 535496.2289223068 593532.6245238204 593838.1011949979 552823.1462389535 0.985906124782514 0.9559891623044017 0.9980556764994455 0.9355951114683628 0.9624582536065525 1.0168260160759435 0.9686573953450979 1.0736392435118312 1.0741918192736382 1.0 19.07645849585234 1.7525023498414718 9.413529927542463 1.0546162688176735 0.9745745643533562 0.583384412984805 0.028726216558960977 0.07751630390895276 29.177539002987185 0.013190681573536516 0.007163768171642844 56.55908173287344 -1.7525023498414718 -0.08004170446431724 DVDELPSLQPSVGS(ph)PSRPSSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 DVDELPSLQPS(0.365)VGS(0.593)PS(0.042)RPSSSR;DVDELPSLQPS(0.166)VGS(0.807)PS(0.026)RPSSSR 128.58 9.9638e-06 504290000.0 456470.0 506920.0 509350.0 482250.0 548230.0 554560.0 605150.0 535680.0 610370.0 601990.0 True False 454012.4162385852 523792.52576038864 581062.0526504338 543302.8005537941 618043.8408862074 516224.5724938231 575876.5826025056 575655.1617279232 459952.49203897186 563570.4828104308 0.8056000626124029 0.929417955227754 1.031037058138275 0.9640370053527907 1.096657578310573 0.9159893717632236 1.02183595515987 1.0214430657496967 0.8161401387547241 1.0 19.10423652643536 4.644953824528449 2.950171752215342 0.9887311554087074 0.7923039783083692 0.3555971682724851 0.07195386922071459 0.3164573568213785 4.303876922732947 0.016693907831718105 0.12977653781549653 44152.350077542666 -4.644953824528449 -0.1964271771003382 DVDFEGTDEPIFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVDFEGTDEPIFGK 14 0 P42285;H0Y8U3 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 149.23 1.755e-05 25831000.0 72154.0 77495.0 66781.0 59763.0 65421.0 86652.0 77753.0 69792.0 92632.0 84004.0 False True 71765.53088106296 80074.37422828333 76183.18432914239 67328.98967236152 73751.97656935346 80661.95119686733 73991.79034469565 75000.23343659507 69804.08480520663 78642.7928005572 0.9125506397396722 1.018203593447612 0.9687242990256903 0.8561368089140965 0.937809733644542 1.02567505965144 0.9408591392773045 0.953682222690134 0.887609433991414 1.0 16.263026935815564 DVDFELIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDFELIK 8 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 125.96 0.0028837 216517000.0 611610.0 585420.0 513210.0 455480.0 446690.0 594550.0 612210.0 589610.0 843700.0 585670.0 False True 608317.1597162595 604905.3508061368 585465.5070987133 513143.72129858343 503573.32376094034 553450.1579201573 582595.063430686 633609.6921789151 635781.4400007874 548292.039182686 1.1094765494371397 1.1032539369126018 1.067798664323925 0.9358948965655299 0.9184399695308255 1.0094076119455615 1.06256341839129 1.1556062224128008 1.159567155030224 1.0 19.064585001299616 1.9762335880315471 4.899712297506165 1.120339050458694 1.021537537380425 0.1935346393790549 0.07208537101224194 0.28061929920100726 17.70358433153406 0.03406109016121598 0.021471569105780994 94.67462378953718 -1.9762335880315471 -0.09880151307826912 DVDFMYVELIQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DVDFMYVELIQR 12 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;; 187.42 2.4443000000000006e-05 347943000.0 199700.0 204775.0 216523.0 202443.0 175069.0 214644.0 197248.0 196017.0 252778.0 221078.0 False True 198624.83738875578 211590.8120858987 247007.5563483461 228072.26304305185 197362.99943474017 199806.1654976274 187706.3606794664 210644.7838941578 190484.24895166402 206968.61276560175 0.9596857935831288 1.022332851626791 1.1934541815192512 1.1019654622768846 0.9535890336099405 0.9653935581232984 0.9069315302028408 1.0177619740473374 0.9203533154439858 1.0 17.65905247094976 3.232732314818587 24.99657164663699 0.9619219872284324 1.074864426056376 0.4123079380002138 0.06342327768873876 140.6835074622612 603367.2174246262 0.019004130446482134 0.02329643572454783 1708.9616412860196 -3.232732314818587 0.11294243882794364 DVDGLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDGLDR 7 0 P35221-2;P35221;G3XAM7;P35221-3 P35221-2 CTNNA1 Catenin alpha-1 0 ; 149.99 0.0046034 1347320000.0 1593870.0 1892880.0 1800740.0 1762840.0 1888970.0 2215100.0 1905860.0 1812420.0 2481900.0 1939030.0 False True 1585288.7810156061 1955883.3665298782 2054268.539687334 1986015.3632519403 2129519.132697626 2061975.3507845255 1813666.2707077789 1947671.9836822804 1870269.0007561375 1815279.4453128972 0.8733028873922781 1.077455799755803 1.1316541621134495 1.0940548951732407 1.1731081614988286 1.1358996853672332 0.9991113353873512 1.0729323183332595 1.0302926117437317 1.0 20.79176022406564 1.3365220675272258 1.1388681539647219 1.0055937556729777 1.081708886335328 0.06959012240166684 0.07974620627775957 1.1640553544388834 3.005829893032692 0.07479586193615739 0.025082320155722048 21.703114794131732 -1.3365220675272258 0.0761151306623502 DVDIIDHHDNTYTVK ddPTM_BT-474_Trastuzumab_2h_R1 5 DVDIIDHHDNTYTVK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ;;;; 164.65 8.498200000000002e-07 8970570000.0 9011480.0 8177720.0 7606280.0 6749850.0 6901950.0 9559720.0 9218480.0 6155200.0 12090020.0 9072880.0 False True 8962963.192949545 8449910.466663875 8677178.10902905 7604380.317922292 7780872.421437291 8898879.05756033 8772546.904386584 6614532.279472292 9110596.568968022 8493841.030716628 1.0552308620489141 0.9948279507593931 1.0215847079842222 0.8952816859206875 0.9160605188275835 1.0476860851738272 1.0328127018932967 0.7787445344870344 1.0726120886912054 1.0 23.017985677027273 3.776953225293332 22.131124372378387 0.9495930750778322 1.0209760126478125 0.08401790277763233 0.08327253629482363 309.8864948258357 178628.50643636964 0.022040495025125065 0.039731438492723946 5983.471479611331 -3.776953225293332 0.07138293756998026 DVDKFGNEITQLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDKFGNEITQLAR 14 1 Q8TAT6;Q8TAT6-2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 ; 204.52 1.2341e-08 1584590000.0 1731100.0 1642480.0 1593790.0 1541270.0 1521090.0 1965390.0 1877130.0 1806160.0 2294140.0 1937420.0 False True 1721779.9499432924 1697148.953899874 1818181.7785289814 1736394.6239700268 1714791.795293219 1829527.215330414 1786326.0505670367 1940944.8306946426 1728779.936901039 1813772.1968912885 0.9492812564302915 0.9357012731856289 1.0024311661879317 0.9573388692064622 0.9454284271378088 1.0086863270184254 0.9848679198130321 1.0701149979150202 0.9531406093136052 1.0 20.790561839384097 2.7258020787466877 22.181466580771193 1.0112788505748183 0.9592230189561676 0.31678167725388684 0.032227495320967504 182.68488439420187 317606.66616282734 0.010421176079684456 0.009905416808324258 531.8658165376033 -2.7258020787466877 -0.05205583161865068 DVDKIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVDKIR 6 1 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 0 101.52 0.033223 1830200000.0 2552800.0 2821900.0 2471800.0 2812800.0 2645400.0 3040900.0 3325800.0 3025800.0 4419200.0 3173800.0 False True 2539056.0084427437 2915825.235625428 2819807.9547292506 3168900.191597121 2982276.009485753 2830689.7405086304 3164918.3482102198 3251600.5607010713 3330147.3742461493 2971245.3667731117 0.8545426900236979 0.9813478443189388 0.9490323438995117 1.066522552137345 1.0037124644218194 0.9526947091491369 1.0651824260638039 1.0943561232145684 1.120791776904921 1.0 21.502636317819636 6.711227585601534 0.38881751138137016 1.06760239945726 7.820987397732956e-16 0.5692094734490719 0.04987589393822097 18.870664812776013 0.6559292838231339 0.03840976775331875 12.904956051867664 5143130.991509586 -6.711227585601534 -1.0676023994572592 DVDLEFLAK ddPTM_BT-474_Trastuzumab_2h_R1 6 DVDLEFLAK 9 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 187.78 9.338e-05 3656740000.0 6346980.0 6100430.0 5515840.0 5264490.0 5330780.0 6608100.0 6348490.0 6195090.0 8908180.0 6552390.0 False True 6312808.564895777 6303479.124762193 6292422.327459256 5930973.894219684 6009623.234991487 6151297.600794202 6041389.285113079 6657399.073829608 6712878.4024963975 6134210.860416695 1.0291150253134518 1.0275941385448235 1.0257916577441901 0.9668682784433653 0.9796897060990916 1.0027854830501126 0.9848682124863718 1.0852902231954533 1.094334471906366 1.0 22.54844632869874 1.7390392898716711 10.274886317928072 1.0665802284951458 1.002039181086311 0.41584176760521063 0.03089509120927103 0.07865056716358652 40.28492537131996 0.01473069701497437 0.00799815471403374 54.832656883465106 -1.7390392898716711 -0.06454104740883482 DVDREDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDREDR 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 149.65 0.0018257 464700000.0 688080.0 774110.0 704820.0 695540.0 708770.0 583930.0 731640.0 620160.0 879280.0 780580.0 False True 684375.4537328756 799875.7833906238 804052.5295947372 783595.2926846773 799027.6582910779 543564.2935233669 696247.7780637807 666439.4883086717 662593.2257483609 730762.7161118395 0.9365221276945053 1.094576619407341 1.100292217797933 1.0722978545675448 1.0934160168193239 0.7438314538206094 0.9527686110866438 0.9119779562025118 0.9067146026193191 1.0 19.479043503239776 2.777411213276446 24.999982318349222 0.9030541276339212 1.0643600969652318 0.5179677513015541 0.07534514530974395 411.06218270863593 264513.86564544804 0.021998715823604527 0.023332844575301024 598.9784715418344 -2.777411213276446 0.16130596933131058 DVDVSEDS(ph)PPPLPER ddPTM_BT-474_Trastuzumab_2h_R1 4 DVDVSEDSPPPLPER 15 0 Q05209;Q05209-2;Q05209-3 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 DVDVS(0.002)EDS(0.998)PPPLPER;DVDVS(0.013)EDS(0.987)PPPLPER;DVDVS(0.001)EDS(0.999)PPPLPER;DVDVS(0.001)EDS(0.999)PPPLPER 218.21 2.0649e-12 2776890000.0 2215560.0 2290530.0 2021060.0 2021170.0 2071800.0 2077080.0 2146600.0 2068210.0 2441370.0 2031450.0 True False 2203631.671131857 2366768.906395378 2305607.680631561 2277049.914764773 2335631.4494793173 1933496.3485203967 2042760.7571916697 2222550.332357583 1839727.0761819626 1901801.1217881546 1.1587077354649515 1.2444881219599033 1.2123284891449273 1.1973123207666392 1.2281155073056518 1.0166658996932554 1.074119020011398 1.1686554955167165 0.9673603906869992 1.0 20.858934955579638 2.7466370490045953 24.94124154464058 1.0674010930799873 1.2098325309275357 0.6679652112586272 0.05633356594523811 412.8216046060206 1274855.8508977704 0.01770506431510277 0.01847773860983415 558.0036618991946 -2.7466370490045953 0.14243143784754841 DVDWGEVDYLIVDTPPGTSDEHLSVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVDWGEVDYLIVDTPPGTSDEHLSVVR 27 0 I3L3A0;I3L531;P53384-2;P53384 I3L3A0 NUBP1 Cytosolic Fe-S cluster assembly factor NUBP1 0 168.65 6.9184e-12 89034000.0 25541.0 47425.0 53078.0 47356.0 48698.0 58009.0 56540.0 46148.0 42638.0 54309.0 False True 25403.490093871853 49003.51245598208 60550.92103775351 53351.26474447995 54899.401644340076 53998.97436849792 53804.94419622516 49591.79809479581 32130.43621992833 50842.95312372587 0.4996462347899558 0.9638211285000002 1.1909402841019756 1.0493344990140547 1.0797838888457734 1.0620739168531752 1.0582576520543823 0.9753917710899801 0.6319545629408898 1.0 15.633760208736174 4.72917846250597 4.574595377037097 1.01541656015216 0.47053360413381373 0.5452356802697453 0.13759935219764882 0.13306600688236758 7.295700710051298 0.033128186961962895 0.22977250877460484 53601.687505493275 -4.72917846250597 -0.5448829560183464 DVDWTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDWTAR 7 0 K7ESF4;Q9BRP1 K7ESF4;Q9BRP1 PDCD2L Programmed cell death protein 2-like 0 ; 130.04 0.020343 101840000.0 331620.0 424370.0 402110.0 427530.0 425430.0 407380.0 411430.0 365340.0 483680.0 457330.0 False True 329834.5947664456 438494.8989129181 458723.5927972244 481655.25416436186 479605.9887788333 379218.77946936944 391527.5590847706 392603.52595893043 364483.5449799465 428142.80786008795 0.7703845275715379 1.0241790609646608 1.071426599666553 1.124987376459121 1.1202009702696276 0.8857296502649501 0.9144788885784979 0.9169919913432918 0.8513130158642195 1.0 18.707732565051966 2.717160753800402 24.608594818304674 0.9094299323941015 1.0307849312600987 0.22722659624992392 0.09929651775950915 947.9490397845469 1090084.2039550338 0.032961342893183095 0.031107919608768676 521.3876666738595 -2.717160753800402 0.12135499886599721 DVDYVCISDNYWLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVDYVCISDNYWLGK 15 0 Q96KP4;Q96KP4-2;J3QKT2;J3QRH4;J3QRA8;J3KRJ8 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ; 182.08 3.5547e-11 64132000.0 174024.0 179813.0 163452.0 168568.0 158983.0 195566.0 194506.0 176178.0 264540.0 200779.0 False True 173087.0741198839 185797.96700574592 186464.62084974736 189908.69151633346 179228.54268393185 182046.98273284608 185097.00169492338 189325.29697375715 199347.6616543891 187965.11232444982 0.9208468102373983 0.9884704917210213 0.9920171809749863 1.0103401060327024 0.9535202595179598 0.9685147444734938 0.984741260790057 1.0072363676029386 1.0605567128345164 1.0 17.520105386620408 1.6111408979905704 2.972733882935407 1.031100130322542 0.9753739088830211 0.42221689046353705 0.026743661763778733 0.2031115546210434 4.20053260193351 0.017255480235729342 0.0070254230276543105 40.84518787241316 -1.6111408979905704 -0.055726221439520884 DVEDEETWIR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVEDEETWIR 10 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;;; 276.82 1.5719e-23 2230060000.0 1480880.0 1538000.0 1464370.0 1360330.0 1398830.0 1713800.0 1682800.0 1530130.0 1979200.0 1687980.0 False True 1472907.1066212351 1589191.4002593672 1670540.5674677866 1532547.6385222243 1576962.7089850132 1595329.0398512585 1601396.5350797256 1644316.0704427054 1491452.6799212475 1580251.6712476162 0.9320712222113127 1.005657155233187 1.0571357701200133 0.969812382677166 0.9979187098343605 1.009541118593938 1.0133806938583494 1.0405406305595046 0.943807057482014 1.0 20.59172290997139 2.800604495986979 5.785851312317063 1.0079491203151016 0.9954628984992837 0.0 0.03722750331139877 1.154806766868191 79.24503122642489 0.011571398302124707 0.012225528909867623 631.8361876743111 -2.800604495986979 -0.012486221815817933 DVEDEILWVGER ddPTM_BT-474_Trastuzumab_2h_R1 4 DVEDEILWVGER 12 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;;; 252.68 1.0673e-20 832999000.0 964670.0 946860.0 898170.0 815950.0 845020.0 969320.0 960070.0 836930.0 1157920.0 947450.0 False True 959476.3239049129 978375.6627110428 1024624.5289664101 919249.1863387615 952628.2881740573 902313.1899338443 913627.7462764388 899385.9664444282 872566.1313330708 886982.9298472455 1.0817303147763533 1.1030377584375122 1.155179535577837 1.0363775394156378 1.0740097200496488 1.0172836021649694 1.0300398300041491 1.0139833994317329 0.9837462503177401 1.0 19.758546814293815 3.0074018000201375 0.8880487317502919 1.0031263146596818 1.1112084205612138 0.7165661227402126 0.026777428641480184 0.3102855215479211 0.5404760582996745 0.01403746817396137 0.017865388919863903 1017.1893396186615 -3.0074018000201375 0.108082105901532 DVEDEILWVTER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVEDEILWVTER 12 0 O15020;O15020-2 O15020 SPTBN2 Spectrin beta chain, non-erythrocytic 2 0 ; 215.72 9.4853e-11 94087000.0 99294.0 104265.0 91387.0 85820.0 98341.0 119509.0 109356.0 97861.0 134640.0 98770.0 False True 98759.4121366006 107735.39749547654 104253.49524995624 96684.8032006771 110864.14343722642 111247.62412392581 104066.03249951178 105163.88474808908 101459.77608356765 92466.41403874863 1.0680571228296456 1.165130048736716 1.1274741897773624 1.0456207716691677 1.1989666149567357 1.2031138579388057 1.1254468293309425 1.1373198132677613 1.09726085020503 1.0 16.496641819788753 0.8313300643684335 2.252601826123255 1.0000532540996252 1.1362134957581553 0.42182026984744303 0.047249821905639984 0.6030306538316345 5.5787861623160575 0.045091433894735355 0.012268328490235866 6.781567117867767 -0.8313300643684335 0.13616024165853013 DVEDGAFLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVEDGAFLLR 10 0 Q5T5P2;Q5T5P2-3;Q5T5P2-7;Q5T5P2-9;Q5T5P2-2;Q5T5P2-10;Q5T5P2-8;Q5T5P2-6;Q5T5P1;Q5T5P2-4;Q5T5P0 Q5T5P2 KIAA1217 Sickle tail protein homolog 0 ; 91.087 0.024167 99442000.0 91410.0 96041.0 95547.0 94720.0 90875.0 112371.0 96485.0 96653.0 123935.0 109429.0 False True 90917.8587166058 99237.66662698955 108999.18709058798 106711.54228813952 102447.39259167532 104603.05726288122 91817.65194150661 103865.73765398932 93392.87989391663 102445.14753311957 0.8874784302225042 0.9686907483334624 1.063976085888788 1.0416456499673707 1.0000219147378848 1.0210640501939248 0.8962616009882051 1.0138668365957546 0.911637907141708 1.0 16.644492125006572 -0.008077672681396295 8.071553775361378 0.9999999957458465 0.9830107673409298 0.006420099579212191 0.05885061952348051 7663050.843231687 949389.7883417256 0.0563372264976006 0.013663784448485861 0.9815723751052439 0.008077672681396295 -0.01698922840491668 DVEDMELS(ph)DVEDDGSK ddPTM_BT-474_Trastuzumab_2h_R1 8 DVEDMELSDVEDDGSK 16 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK 371.87 2.4342999999999988e-104 5451030000.0 6708950.0 4992200.0 4355870.0 3883180.0 4272960.0 5871300.0 5840470.0 5791320.0 8843720.0 5810930.0 True False 6672829.758634415 5158362.359151369 4969138.634099238 4374790.18984859 4817096.128181846 5465430.850553564 5557944.153337939 6223497.706127084 6664303.705776644 5440071.472412529 1.2266070018516118 0.9482159168882702 0.9134326008947736 0.8041788075825564 0.8854839780341323 1.0046615891481638 1.0216674875547427 1.1440102832632686 1.2250397333146066 1.0 22.375194175251583 2.011351774937106 2.147955229477593 1.1375108491535948 0.9477251225511346 0.26897251849148585 0.11530034651172096 0.38177010144177015 3.299942886719805 0.0655811683158933 0.03516709535773026 102.64830323748052 -2.011351774937106 -0.18978572660246018 DVEDMFSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DVEDMFSR 8 0 Q15717;Q15717-2;M0QZR9;M0R055 Q15717 ELAVL1 ELAV-like protein 1 0 ;;;; 228.45 4.9784e-06 4316257000.0 3560070.0 3892762.0 3527564.0 3582604.0 3598594.0 4007495.0 4037537.0 3656923.0 4691285.0 3994971.0 False True 3540902.9786809585 4022330.229945683 4024214.3490640586 4036161.299067332 4056853.6153622773 3730466.3032785133 3842225.910420844 3929821.1637387327 3535180.6717483634 3740008.5305132554 0.9467633428619552 1.075486913232704 1.0759906872489942 1.0791850516216428 1.0847177438938995 0.9974486081630854 1.0273307879042621 1.0507519252100286 0.945233317760165 1.0 21.834610130056106 2.7279731260726634 24.89556323394072 1.0127872167374627 1.0565052154815822 0.20593139632818191 0.04550685620368976 1202.7330501788153 2828117.501663966 0.014696251003152291 0.013998038384681978 534.5312818427238 -2.7279731260726634 0.04371799874411941 DVEEEKFPTQLSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DVEEEKFPTQLSR 13 1 Q2TAY7;Q2TAY7-2 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed 0 ;;;; 139.77 3.5597e-05 3431480000.0 3158630.0 2799140.0 2301156.0 2217960.0 2418130.0 3256360.0 3292650.0 3020810.0 4475760.0 3201620.0 False True 3141624.2870367873 2892307.6827841415 2625138.7627934874 2498753.5085874354 2726064.522120581 3031255.497846913 3133371.940355518 3246238.1815623636 3372768.9201113195 2997289.8705552123 1.0481549742317178 0.9649742960124094 0.8758374652322872 0.8336709549298851 0.9095098038067336 1.0113321129282065 1.045401704765745 1.0830578028013809 1.1252728517334074 1.0 21.515227184236675 2.48045796168188 2.455143544253855 1.0723881251748943 0.9210055221791966 0.5301918664153913 0.060744690107553824 0.2297980088092849 2.8032339512405002 0.0249823767167493 0.021071007286863643 302.31379262568083 -2.48045796168188 -0.15138260299569772 DVEEGDEKFE ddPTM_BT-474_Trastuzumab_2h_R1 1 DVEEGDEKFE 10 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 150.53 0.00017456 147630000.0 609300.0 414220.0 412130.0 382940.0 438220.0 548430.0 535040.0 480260.0 736400.0 522790.0 False True 606019.596499594 428007.0622987226 470154.32170182257 431420.1647362774 494024.71946656384 510518.32496535545 509158.07114871393 516099.43991086556 554924.0872544498 489425.0946169632 1.2382274696680209 0.8745098422746225 0.9606256950714339 0.8814835395269588 1.0093980159582958 1.0430979747062221 1.040318685635019 1.054501384557689 1.1338284312714857 1.0 18.900728550008747 2.813008115976651 3.4096014496568445 1.0570898081969706 0.9758953497927988 0.08237243635708824 0.09907930287501558 0.5245606082947925 11.913535828460054 0.030844654556846207 0.032346623800169325 650.1418399026853 -2.813008115976651 -0.08119445840417183 DVEPEDPMFLMDPFAIHR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVEPEDPMFLMDPFAIHR 18 0 Q15773;F5H7L5;F5H800;F5H0Y3 Q15773 MLF2 Myeloid leukemia factor 2 0 ;;; 233.52 9.6018e-24 397286000.0 359446.0 464881.0 396375.0 403869.0 396576.0 446600.0 454647.0 378500.0 499345.0 440678.0 False True 357510.782674205 480354.28305850085 452181.15464673756 454998.7739903785 447077.60290988954 415727.5931833191 432653.987689798 406745.59198405617 376288.11563019187 412553.5527565828 0.8665803028125796 1.164344070845809 1.0960544434180066 1.1028841491006125 1.0836838027999647 1.0076936446323832 1.0487220017835477 0.9859219227813717 0.9120952010131192 1.0 18.654221879326485 1.829883277346978 1.4398053024064235 0.9549220868344942 1.0671065086770053 0.20513579881784139 0.07710840858359573 0.5588611914352524 2.1827732125434656 0.05583589629184097 0.023235858923017615 67.59012931506753 -1.829883277346978 0.1121844218425111 DVESCHDMAALNILK ddPTM_BT-474_Trastuzumab_2h_R1 3 DVESCHDMAALNILK 15 0 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 ;; 161.21 1.6653e-06 699370000.0 865970.0 1093480.0 1007240.0 1005210.0 979660.0 1236410.0 1243950.0 1134130.0 1525830.0 1331110.0 False True 861307.7137383124 1129875.8207773801 1149050.636912975 1132469.4829334973 1104413.8941002544 1150939.8868960764 1183775.386149527 1218764.539595448 1149809.6415744924 1246157.4201793955 0.6911708743942795 0.9066878730415331 0.922075027043982 0.9087692009011736 0.8862555213459823 0.9235910874971064 0.949940486635398 0.9780181218356794 0.9226841031119223 1.0 20.24905489688899 5.311036017109635 1.4231308593449445 0.9380236342705528 1.230331275342778e-10 0.8408302683867548 0.03173278947526568 2.122748827890174 1.23231674788051 0.009070608718400179 4.246734021601307 204661.43604498223 -5.311036017109635 -0.9380236341475197 DVESDSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVESDSAK 8 0 P07237;I3L312;I3L3U6;I3L3P5 P07237 P4HB Protein disulfide-isomerase 0 ; 166.68 0.00073762 808960000.0 1332200.0 1144510.0 988380.0 854930.0 951310.0 760600.0 1156100.0 1215540.0 1719510.0 1232650.0 False True 1325027.583221334 1182604.3234790945 1127535.3128470317 963164.0503420527 1072453.689643869 708021.5122598127 1100175.0262691185 1306249.767187052 1295759.800753528 1153981.2216752395 1.1482228292222865 1.0248037847290987 0.9770828949973587 0.8346444744948478 0.9293510756500728 0.6135468229127462 0.9533734220319372 1.1319506267968238 1.1228603866469058 1.0 20.138188317036832 1.8278011655446607 5.648716242169757 1.0949977033810898 0.9146105458333644 0.22723826417713155 0.1340375488100453 0.3191483411340806 14.970521815404478 0.06495430781624123 0.03802059589800834 67.2668615713676 -1.8278011655446607 -0.18038715754772539 DVESYIHR ddPTM_BT-474_Trastuzumab_2h_R1 6 DVESYIHR 8 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ;;;;; 175.44 0.00026609 3882510000.0 2877740.0 3952910.0 3843700.0 3588060.0 3420770.0 3754940.0 3576160.0 3472870.0 4220930.0 3735800.0 False True 2862246.5675869724 4084480.219765447 4384859.549960682 4042308.028107916 3856384.7830077093 3495369.8359779916 3403167.4785421425 3732033.194276533 3180738.3590642693 3497378.0456207106 0.8183978198098926 1.1678692341766954 1.2537562404645513 1.1558110033799598 1.1026502519041468 0.9994257956627727 0.9730625154473835 1.0670945907462446 0.9094636946803832 1.0 21.73784232048239 2.762437047586899 4.902689728776578 0.9981372982817435 1.1161674797435814 0.18612792765967567 0.11186709988049091 0.32748628719782913 21.97746630729653 0.035772015877127965 0.03672358400365152 578.6781009759771 -2.762437047586899 0.11803018146183797 DVFERPSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVFERPSAK 9 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 ; 87.485 0.012248 677780000.0 655150.0 713590.0 683430.0 657070.0 534730.0 715480.0 721280.0 671820.0 937180.0 729390.0 False True 651622.7451940071 737341.4117757351 779651.0035199489 740254.9946290952 602824.6959069778 666020.551658757 686388.9308428252 721954.619832836 706224.546568611 682839.7057378036 0.9542836184224718 1.0798162520134102 1.1417774874083244 1.0840831141025327 0.8828202151127545 0.975368810662711 1.0051977427135506 1.057282717695464 1.0342464573080739 1.0 19.381187425019128 DVFFYQADDEHYIPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DVFFYQADDEHYIPR 15 0 P23258;K7EIS0;Q9NRH3;K7EKE5 P23258 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma chain;Tubulin gamma-2 chain 0 ;; 249.13 1.6990000000000002e-18 653780000.0 688804.0 796924.0 705643.0 719264.0 747369.0 818998.0 759770.0 719937.0 902570.0 821982.0 False True 685095.5557973188 823449.1335892685 804991.4008410915 810322.7486521997 842542.0121468811 762382.5959739193 723017.0224967462 773662.354706012 680143.7173183722 769522.4050258041 0.8902866912294072 1.0700781786355607 1.0460922197763665 1.0530203452945954 1.0948895141248403 0.9907217658572977 0.9395659148774252 1.0053798949233572 0.883851740867201 1.0 19.55360380638218 2.4860994306048343 22.744656920283614 0.9624945370345982 1.0358951527647846 0.2469581744472249 0.060169855552599565 180.2824296362709 456719.45834911807 0.01960378914867204 0.017245962064830384 306.26645426003955 -2.4860994306048343 0.07340061573018641 DVFHMVVEVPR ddPTM_BT-474_Trastuzumab_2h_R1 6 DVFHMVVEVPR 11 0 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 ;;;;; 174.42 1.1024000000000003e-05 1712940000.0 2396320.0 2448200.0 2163890.0 2092010.0 2009920.0 2314500.0 2149550.0 2021690.0 2480680.0 2210230.0 False True 2383418.4793761806 2529686.857031845 2468546.903130951 2356858.251501383 2265871.398270814 2154504.062746958 2045568.0544215771 2172558.773733808 1869349.653408975 2069171.2291268948 1.1518710708063948 1.2225604248804816 1.1930123850468268 1.1390349036004526 1.0950622966214927 1.041240102519727 0.9885929330675658 1.0499656786019294 0.9034291735236256 1.0 20.980621606107746 2.959836765345454 0.9599761837239921 0.9860650481363025 1.1986571986434762 0.8421072473848489 0.037756550330179446 0.20101446957768754 0.40412803479013704 0.018831351190610933 0.02235031556437146 911.6681138403575 -2.959836765345454 0.21259215050717373 DVFHTTVNFINQNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVFHTTVNFINQNLR 15 0 P55957;P55957-2;P55957-4 P55957 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 0 216.15 2.245e-12 490110000.0 155410.0 250490.0 242650.0 259440.0 220430.0 264910.0 259750.0 224680.0 272260.0 263860.0 False True 154573.2898276742 258827.4082255975 276813.0108483906 292285.0773990173 248500.45390902893 246597.395231064 247184.90015864003 241446.76250192258 205165.17109708933 247020.22889808845 0.625751544791279 1.0477984308417925 1.1206086727520341 1.183243488611629 1.0059923230479686 0.9982882629940445 1.0006666306694239 0.9774372065760442 0.8305602015360978 1.0 17.91426966578504 -0.5324720742638144 7.675713045423489 0.999999999907696 0.9908771305544646 0.0 0.1471914379593904 0.0 0.0 0.13990941719623248 0.032976965638073716 0.29344581876119125 0.5324720742638144 -0.009122869353231366 DVFISAAER ddPTM_BT-474_Trastuzumab_2h_R1 6 DVFISAAER 9 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 ;;;;; 182.29 0.00010817 1851340000.0 1373540.0 1576880.0 1450110.0 1432970.0 1248609.0 1463780.0 1462970.0 1239814.0 1876920.0 1504540.0 False True 1366145.0132546392 1629365.4975559113 1654272.8834179258 1614383.855074275 1407611.9550646404 1362592.333967485 1392200.5520118766 1332335.2163279257 1414378.2154394656 1408518.9690985011 0.9699159494664225 1.1567934357311207 1.1744768226136957 1.1461569850972857 0.9993560512469056 0.9673936694225632 0.9884144853959128 0.9459121570657045 1.0041598632815818 1.0 20.425747562529427 3.163839279618853 5.382461698609791 0.9769219163725313 1.1193291147753868 0.5631141970651388 0.05490562386128084 0.1373264336412699 7.039550218332408 0.015991395189021807 0.019418212446411228 1458.2744933309073 -3.163839279618853 0.14240719840285543 DVFLYR ddPTM_BT-474_Trastuzumab_2h_R1 6 DVFLYR 6 0 O14579;M0QXB4;O14579-3;O14579-2;M0R061 O14579 COPE Coatomer subunit epsilon 0 ;;;;; 155.88 0.022848 4614980000.0 2350060.0 2916450.0 2855820.0 2795410.0 2612420.0 2835040.0 2902580.0 2511380.0 3269730.0 2817560.0 False True 2337407.5380762108 3013522.2752187434 3257894.6327675697 3149308.6193801537 2945096.2019735295 2639060.3577663177 2762171.116467621 2698791.928129241 2463948.8536372785 2637740.9085655245 0.8861399277260165 1.1424633349821984 1.2351078994105231 1.1939416070598206 1.116522169561814 1.0005002194099157 1.0471730212387558 1.0231451919198984 0.9341132958267843 1.0 21.33087143251683 2.765980414873887 5.862551628231022 1.0077899552367202 1.128090950791249 0.27664568397722045 0.09052648273345562 0.25046597639324775 28.74539207778872 0.029110812076194415 0.03016550486062485 583.4187935818704 -2.765980414873887 0.12030099555452889 DVFQHSQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVFQHSQSR 9 0 Q9NZB2;Q9NZB2-4;Q9NZB2-6;Q9NZB2-2;Q9NZB2-5;A0A0C4DH52 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 0 ; 135.55 0.00021771 310470000.0 238760.0 323130.0 347040.0 323000.0 308650.0 295120.0 306420.0 274810.0 330370.0 314570.0 False True 237474.54268872965 333885.18671378976 395900.2154742452 363891.76688206417 347954.7479881224 274719.0490377541 291597.2939619262 295317.7176569045 248954.74023119613 294493.87328307325 0.8063819462229168 1.1337593648097828 1.3443410929425286 1.235651400232304 1.1815347603298405 0.9328514918668234 0.9901642119448685 1.0027974924050096 0.8453647522639495 1.0 18.1678780946519 2.739209725735379 24.981055696713504 0.9614318790989352 1.1565976464394225 0.31645018375353273 0.13550061424162163 72.62989208230452 2795230.274194541 0.04424138311149613 0.04443393416862378 548.541798031511 -2.739209725735379 0.1951657673404873 DVFRDPALK ddPTM_BT-474_Trastuzumab_2h_R1 6 DVFRDPALK 9 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 ;;;;; 156.48 6.4594e-05 11294820000.0 15392300.0 16137700.0 13898200.0 13511800.0 13127800.0 16150800.0 17083400.0 15918100.0 20324000.0 17249600.0 False True 15309429.567045309 16674833.589054365 15854945.754680002 15222392.494603926 14799547.51543325 15034333.210893737 16257010.677074512 17105989.452474 15315422.527647242 16148715.759874428 0.9480276818721066 1.0325795460767977 0.9818084602167331 0.9426379608728896 0.9164535270480438 0.9309924971402583 1.0067061008943616 1.0592786266619518 0.948398792534468 1.0 23.94491610216294 2.1171046004057628 7.260803340082358 1.0149242663555214 0.9606342293206029 0.2184224902953692 0.03945086756170697 0.30372966352225467 18.088991382454786 0.015859596434319292 0.01169028280230579 130.94972791888142 -2.1171046004057628 -0.054290037034918415 DVFRDPALKR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVFRDPALKR 10 2 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 ;;; 130.01 0.00016202 6694670000.0 6668000.0 7460320.0 6923170.0 6392110.0 6446880.0 7052170.0 7463290.0 6810750.0 9416280.0 7683490.0 False True 6632100.228884441 7708632.241341335 7897892.158727609 7201350.47060219 7267851.954348502 6564670.086922549 7102262.150163519 7319002.749287731 7095763.965687581 7193123.09003326 0.9220056637253756 1.0716669442265434 1.09797817441368 1.001143784204156 1.01038893167542 0.9126314126361202 0.9873683602056473 1.0175000007199777 0.9864649717338246 1.0 22.778186861300682 3.377130191494351 3.2181348101917533 0.9851817613307144 1.035894346759247 0.12531656171950767 0.05054253089827417 0.45537984377005547 9.378665188121605 0.014772972328648366 0.02091447866453686 2383.0337409840154 -3.377130191494351 0.05071258542853252 DVFSPIGER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVFSPIGER 9 0 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ; 116.05 0.0032025999999999995 349620000.0 266000.0 387740.0 384560.0 357330.0 380050.0 374950.0 404870.0 346010.0 355510.0 423280.0 False True 264567.88555537816 400645.69150622067 438702.70534455916 402567.94136212964 428447.1147671665 349030.58903736086 385284.8913464043 371831.0232031787 267899.324089937 396265.90801176004 0.6676524026072073 1.0110526376503999 1.1070917191582874 1.0159035466411674 1.0812111415712589 0.8807989331926143 0.9722887676094765 0.9383371511034551 0.6760594809533464 1.0 18.596109327541225 1.4333911515646338 11.568851058963489 0.8276014714196539 0.9704708605523966 0.11091969341591856 0.13677466151842022 0.9147974439136115 234.84880128305784 0.07936768728179727 0.03271860291067707 27.126336920080885 -1.4333911515646338 0.14286938913274272 DVGAQILLHSHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVGAQILLHSHK 12 0 Q96KP4;Q96KP4-2 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 137.84 4.922600000000001e-05 752940000.0 1023800.0 987240.0 983070.0 846060.0 767650.0 1051000.0 1056200.0 247120.0 1552000.0 806610.0 False True 1018287.9745548727 1020099.6866008166 1121477.7110023804 953171.1092515148 865405.6772819766 978346.8437878832 1005107.5709241794 265561.3492499338 1169530.3957345285 755131.4592264356 1.348490997313259 1.3508901981726693 1.4851423514406796 1.2622585082443167 1.1460331399363324 1.2955980469812656 1.3310365481976103 0.3516756532988012 1.5487772114971974 1.0 19.52636829644371 DVGLHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVGLHIK 7 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 94.887 0.013871 228430000.0 111420.0 128310.0 103290.0 114170.0 122640.0 139310.0 123130.0 106980.0 160210.0 133200.0 False True 110820.12709992562 132580.72078496704 117832.33418722561 128623.91029388632 138257.4770557697 129679.82760046603 117173.73149772212 114963.39083343282 120728.39220401335 124699.06196174279 0.8887005672418357 1.0632054379498244 0.9449336052213139 1.0314745618002135 1.1087290864961485 1.039942286336134 0.9396520683826042 0.9219266690931738 0.9681579821430604 1.0 16.92809108709251 -0.3182160684396667 7.819054029842307 1.0000001548919621 0.9895192429394907 0.0022092381762909286 0.06603593967111387 0.0 0.0 0.06688753229948105 0.015765542555265764 0.48060018269503946 0.3182160684396667 -0.010480911952471472 DVGRPQPGR ddPTM_BT-474_Trastuzumab_2h_R1 8 DVGRPQPGR 9 1 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 ;;;;;;; 153.05 7.2068e-05 2402508000.0 1840569.0 1973084.0 1641877.0 1612553.0 1545354.0 1797739.0 1577790.0 1483753.0 2011222.0 1852775.0 False True 1830659.5810104383 2038756.9081855332 1873039.0101492847 1816702.0444612147 1742145.6718692272 1673465.534352413 1501466.2699568828 1594478.1832050711 1515583.2870940662 1734529.3132595194 1.0554215296426852 1.1753948997000867 1.0798543419421829 1.0473746569594011 1.0043910232888456 0.964795187697142 0.8656332634329105 0.9192569828691654 0.873772080707007 1.0 20.726112791462906 3.09562636760645 1.1667550265235274 0.9077648608287192 1.1135613779696987 0.747056331675109 0.04615017521505035 0.20111338935877102 0.5838719245602725 0.01789753898761248 0.024006978469307088 1246.3108262782239 -3.09562636760645 0.20579651714097946 DVHEDSITVAFENNWQPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVHEDSITVAFENNWQPDR 19 0 Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;Q06787-6;Q06787-5;Q06787-8;Q06787-3;Q06787-4;A8MQB8;Q06787-10;Q06787-11;A0A087WXI3;Q8IXW7;A0A087WY29 Q06787 FMR1 Fragile X mental retardation protein 1 0 ; 204.78 4.4241e-16 314520000.0 317660.0 379910.0 303900.0 318190.0 298230.0 378370.0 370240.0 288200.0 431830.0 361610.0 False True 315949.75385534426 392555.0746895551 346686.47845384694 358472.8213752441 336207.8227523012 352214.17248717556 352330.0767458511 309706.9474499473 325411.28272554185 338531.74021010305 0.9332943305678111 1.1595812978893014 1.0240885485026687 1.0589046130586308 0.9931353040741185 1.040416985032425 1.0407593584199353 0.9148535001702759 0.9612430507212758 1.0 18.36893157942461 1.7537659662498766 24.999565682349886 0.9520921753012389 1.0394872795179604 0.27515844631165043 0.05677171446909755 5.623435937407923 9257.389136149828 0.024485139930264785 0.013578278636808999 56.72388478732927 -1.7537659662498766 0.08739510421672148 DVHEDSLTVVFENNWQPER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVHEDSLTVVFENNWQPER 19 0 B4DXZ6;P51114;C9JAJ4;P51114-2 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ; 248.54 6.954e-25 1086450000.0 421970.0 506530.0 490250.0 474200.0 534550.0 544100.0 508620.0 426430.0 550700.0 550230.0 False True 419698.1604052744 523389.54484614945 559272.9386706101 534233.6713791784 602621.7739739211 506487.64767363213 484016.10748291604 458252.3719676649 414987.36400193616 515113.8503243969 0.8147677647202968 1.0160657581164647 1.0857268510998173 1.0371176605768622 1.1698807430520755 0.9832537940004286 0.939629379365558 0.8896137653434808 0.805622608944789 1.0 18.974531806044677 2.183370153038246 2.624982931005237 0.8912781746635918 1.0308852176157959 0.24859327700434242 0.09470968924584992 0.3542181729561967 4.948674030998772 0.04240719246323219 0.028703271301940385 152.53522711910722 -2.183370153038246 0.13960704295220405 DVHHEPVYPQPPFSYSDLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVHHEPVYPQPPFSYSDLSR 20 0 A0A3B3ITS5;Q14181;H0YDR7;Q14181-2 A0A3B3ITS5 POLA2 DNA polymerase alpha subunit B 0 ; 152.32 3.8006e-08 705810000.0 208900.0 226630.0 229527.0 231500.0 199966.0 247650.0 248680.0 122867.0 282660.0 227690.0 False True 207775.30561097167 234173.24254927202 261842.4065155518 260807.87626377045 225430.48480865973 230530.53840539412 236650.39835014648 132035.95944598413 213002.23044994954 213158.62926478384 0.9747449884042694 1.0985867349446314 1.2283922420531865 1.2235389069789764 1.0575714695961564 1.0814975645158191 1.1102079196436443 0.6194258233945115 0.9992662796933263 1.0 17.701567935300535 1.7750639161763926 24.999999999999623 0.8340405622260794 1.1158926645329648 0.4318046092001824 0.12246807201941295 32.099869606659176 21993.637029889065 0.05518882175500339 0.030630566825969825 59.574981502834454 -1.7750639161763926 0.2818521023068854 DVHLELK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVHLELK 7 0 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;E5RHA5;A0A2R8YF29;Q8TE04-3;Q9H999;Q8TE04-2;Q8TE04-4;Q8TE04 V9GYZ0;Q8TE04 PANK2;PANK3;PANK1 Pantothenate kinase 2, mitochondrial;Pantothenate kinase 1;Pantothenate kinase 3 0 101.99 0.0087016 185770000.0 345060.0 330320.0 299870.0 282130.0 287900.0 373040.0 384510.0 283730.0 482610.0 373140.0 False True 343202.23529977 341314.5015173435 342089.08948323526 317847.6290725591 324562.35848300805 347252.62284170487 365909.7823291568 304903.37335174705 363677.23214268085 349325.8857387739 0.9824700925725752 0.977066159284224 0.9792835385209605 0.9098885655162863 0.9291105289738418 0.9940649605949344 1.0474739985423935 0.8728336083852485 1.041082974350887 1.0 18.414214027685613 2.7195426809357133 23.970752255869268 0.9788700886420382 0.9555386007584973 0.08777552064560834 0.050032954296585525 1849.7962501475345 2331532.685930254 0.01682250103883473 0.015894324229092364 524.2551204280229 -2.7195426809357133 -0.02333148788354089 DVHMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVHMPK 6 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 0 ; 82.26299999999998 0.059703999999999986 2291000000.0 5058900.0 5485700.0 4978600.0 4764800.0 5074900.0 5689200.0 5650700.0 4476000.0 7181700.0 5530700.0 False True 5031663.4444966335 5668288.208324319 5679543.605233053 5368023.191454046 5721158.433711071 5295918.994936273 5377354.053229743 4810021.84866746 5411866.264849644 5177725.990929508 0.9717902131768366 1.0947447235049117 1.0969185343493735 1.0367530458077363 1.104955813369337 1.0228272033347883 1.0385551615998894 0.9289834682433556 1.0452206768628372 1.0 22.30388718809888 2.1524304736993845 2.452152656229648 0.9849657056633097 1.0619018407326721 0.2458019175297944 0.04678088439839088 0.3176017925355465 3.8202587322972277 0.020921681597315354 0.013467186473249322 142.0464792130891 -2.1524304736993845 0.07693613506936248 DVHNIYGLYVHMATADGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DVHNIYGLYVHMATADGLR 19 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;; 182.27 1.7135e-14 1537072000.0 411653.0 623217.0 552846.0 603739.0 563006.0 541617.6 658738.0 380784.6 637554.0 446968.7 False True 409436.7059869478 643960.401102368 630681.9113764251 680172.2954972461 634701.4769019944 504176.8501426903 626872.3263164657 409200.68043701927 480437.3594859092 418442.77489684377 0.9784771790787494 1.5389449638869253 1.5072118559865286 1.6254846213199043 1.5168178660952234 1.204888411006695 1.498107659932723 0.9779131221417244 1.1481554666688858 1.0 18.67467081162698 1.7341871535079785 8.390766476373267 1.0520144233418898 1.4231559740375144 0.45395734108418573 0.1842108417249075 0.09702958552498259 23.00496316224264 0.08807320562437426 0.047051292485021684 54.22345089067744 -1.7341871535079785 0.3711415506956246 DVHTLLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 DVHTLLDR 8 0 E9PI41;Q9NPD3 E9PI41 EXOSC4 Exosome complex component RRP41 0 ;; 180.44 0.00023908 755440000.0 238909.0 253358.0 245341.0 216797.0 228637.0 241052.0 252430.0 183554.0 289533.0 242748.0 False True 237622.7404892853 261790.8678718547 279882.88025779946 244243.47797130252 257752.56671232855 224388.64261537284 240218.99652375502 197251.73154832586 218181.4716934313 227255.6148129814 1.0456187878342873 1.151966555753942 1.2315774045368575 1.0747522263522562 1.1341966926733336 0.9873843724390796 1.0570431745831308 0.8679729726838783 0.9600707638092127 1.0 17.793956414016915 2.511245977872975 1.2803400181300588 0.9393323360495333 1.1387041336830312 0.5831653369036608 0.06416402649649097 0.27986185739639796 0.9296950944119953 0.033064690129052464 0.024934408608252943 324.5233704707684 -2.511245977872975 0.199371797633498 DVHVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVHVVK 6 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 0 ; 88.59100000000002 0.05113 468530000.0 796120.0 852490.0 736870.0 715750.0 718510.0 821580.0 877250.0 680220.0 1096500.0 904920.0 False True 791833.7783772474 880864.6143089124 840614.8910111435 806363.8766124991 810007.9895575752 764786.1083912926 834814.0660795643 730981.4704871711 826282.2673472363 847167.2308590093 0.9346841444449463 1.0397765426027334 0.9922655886474481 0.9518355375890348 0.9561370648581916 0.9027569534480412 0.9854182688736447 0.8628538072063666 0.9753472953733159 1.0 19.692287260188774 3.547584258360269 2.273998351114473 0.9354657970408681 0.9940872917974742 0.11531556262420173 0.0454245937107094 0.43510885272848177 4.434530893737584 0.01264205271309359 0.02137073427078707 3528.4523620424006 -3.547584258360269 0.05862149475660616 DVIATDKEDVAFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVIATDKEDVAFK 13 1 A0A5K1VW95;P40925;P40925-3;C9JF79;C9JRL4;C9JLV6 A0A5K1VW95 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase 0 ;;; 193.16 1.9194e-06 8483300000.0 8419200.0 7430200.0 6190510.0 5928200.0 6710100.0 10090000.0 9361300.0 9147500.0 14384200.0 10227700.0 False True 8373871.962661054 7677509.715349259 7062079.99912249 6678709.512167962 7564591.461121327 9392502.04930517 8908458.155361218 9830132.90006382 10839406.648405027 9574959.42962548 0.874559524163811 0.8018320883527296 0.7375571720201765 0.6975183092163971 0.7900390092219131 0.9809443181810489 0.9303912168857794 1.0266500837224248 1.1320577103300589 1.0 23.190834943484262 2.5475945082311657 1.628174603070235 1.0341591209366114 0.7710823467571734 0.7738953034083675 0.06327031929191484 0.1831649351654271 0.9804130777033979 0.029512263130920726 0.024383948158275198 352.853563873476 -2.5475945082311657 -0.2630767741794381 DVIEEHGPSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVIEEHGPSEK 11 0 B4DXZ6;P51114;P51114-3;H7C4S4 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ; 118.77 0.00067634 172860000.0 745230.0 645930.0 615770.0 568520.0 591000.0 809980.0 759490.0 681600.0 1016700.0 787710.0 False True 741217.7644828367 667429.3895770703 702465.0636312123 640494.5737083317 666260.3468685575 753987.989087829 722750.5671664495 732464.4530946697 766147.9080820197 737437.6734075391 1.005125980420597 0.9050654904746379 0.9525755042935006 0.8685406195058432 0.9034802138462947 1.0224430026795546 0.9800835965252173 0.9932560804903156 1.0389324219656648 1.0 19.492161595574114 2.7380410064226477 24.999524724886562 1.0031894958640029 0.9239191676900292 0.5396078568393925 0.036805858189570016 37.595198737003706 1808724.2023158586 0.011513811089352373 0.01146756220135789 547.0676150049738 -2.7380410064226477 -0.07927032817397361 DVIEEYFK ddPTM_BT-474_Trastuzumab_2h_R1 3 DVIEEYFK 8 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 ;; 127.56 0.002724 2467890000.0 2578890.0 2537680.0 2373710.0 2211800.0 2126930.0 2739080.0 2841710.0 2495080.0 3799300.0 2864570.0 False True 2565005.5427816124 2622145.1447400465 2707907.7353428123 2491813.6532190354 2397781.9281982076 2549733.8467007712 2704245.630913604 2681275.5393595197 2863013.4230117234 2681750.6901182383 0.9564668155892304 0.9777736440610131 1.0097537199565036 0.9291742377100577 0.894110678160202 0.9507721415327961 1.008388155125029 0.9998228206818518 1.06759119464811 1.0 21.35474369215629 2.1820936288842927 4.292725118482632 1.018130307022224 0.9528060973954967 0.4879114540608257 0.033201095853917624 0.2111411484549487 7.944452424781219 0.01406709777540772 0.010347505669534419 152.08753775917685 -2.1820936288842927 -0.06532420962672736 DVIKEIEDFDSLEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVIKEIEDFDSLEALR 16 1 P46060;B0QYT5;B0QYT4 P46060 RANGAP1 Ran GTPase-activating protein 1 0 ; 222.7 8.571e-15 176091000.0 200179.0 250780.0 241300.0 292760.0 250230.0 323410.0 327300.0 274300.0 482390.0 338510.0 False True 199101.25850597775 259127.06070028854 275272.9425828012 329823.3859826409 282095.30727059074 301053.4279252516 311467.2485925805 294769.6588671775 363511.44819483213 316906.00198700867 0.6282659755814273 0.8176779836151896 0.8686264723824506 1.0407609319944713 0.8901545111226863 0.9499770469402251 0.9828379602774102 0.9301485519963782 1.1470639429850054 1.0 18.27369545809162 5.338428902432724 0.7358896807997155 0.9884723554781032 8.218518863696836e-16 0.7410362333330817 0.0675671466520171 3.035594828865254 0.6665385043108941 0.024046100678093194 3.0380231963935573 217986.1506773418 -5.338428902432724 -0.9884723554781024 DVITLR ddPTM_BT-474_Trastuzumab_2h_R1 6 DVITLR 6 0 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;H0YGA9;H0YFF3;H0YH17;A6NJU9;F8W1W9;A0A1B0GW90;C9JGN3;E9PS57;I3L0I5;E9PKP1;F6SDX0;F8W0I5;E7EUG2;A0A087WT63;F8VUA1;A0A087WUS9;E7EQW1;A0A087WWP6;C9JB18;A0A087WV59;A0A494C1T1;H0YIQ3;F8VY45;A6NJ64;Q92617-3;Q92617-2;A6NHN6;E9PQR5;E9PJ23;O75200;Q92617-6;Q92617-5;Q92617;H0YDQ7;F5H4N5;C9JG80;C9K082;A8MRT5;E5RHQ5 Q9Y365 STARD10;NPIPB9;NPIPB3;NPIPB6;NPIPB7;NPIPB5;NPIPB4;NPIPB11;NPIPB15;NPIPB8 PCTP-like protein;Putative NPIP-like protein LOC613037;Nuclear pore complex-interacting protein family member B9;Putative NPIP-like protein LOC729978;Nuclear pore complex-interacting protein family member B3;Nuclear pore complex-interacting protein family member B15;Nuclear pore complex-interacting protein family member B8;Nuclear pore complex-interacting protein family member B6;Nuclear pore complex-interacting protein family member B7;Nuclear pore complex-interacting protein family member B4;Nuclear pore complex-interacting protein family member B5;Nuclear pore complex-interacting protein family member B11 0 ;;;;; 132.72 0.034376 3073280000.0 2468520.0 2933860.0 2577230.0 2524860.0 2600020.0 2785860.0 2813990.0 2580430.0 3049740.0 2675790.0 False True 2455229.762598357 3031511.756544177 2940081.5823152624 2844507.01712027 2931117.1354740844 2593280.0554090478 2677866.553214285 2772994.789758041 2298172.441422308 2505018.791340927 0.9801242893208326 1.210175255779786 1.1736764580282641 1.1355232251960936 1.1700978633797268 1.0352337732448205 1.0690005849340687 1.1069756439925416 0.9174272262413269 1.0 21.256389995128963 1.6533356560757158 0.8792630318222541 0.9743132245303379 1.134277320912549 0.36777080226569747 0.07225559443029757 0.5847533105371234 0.873568281918619 0.06342240927279325 0.02623118872048466 45.01276136226064 -1.6533356560757158 0.1599640963822111 DVKPHNVMIDHEHR ddPTM_BT-474_Trastuzumab_2h_R1 5 DVKPHNVMIDHEHR 14 1 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YDP2;P68400-2;A0A2R8Y4H0;A0A2R8Y4D6;V9GYW6 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ;;;; 224.16 2.0985e-12 3630800000.0 1591036.0 1584320.0 1433260.0 1342800.0 1353780.0 1614520.0 1577790.0 164125.0 2003840.0 832949.0 False True 1582470.0389567195 1637053.133458335 1635050.5498807544 1512798.3423196157 1526175.8585172833 1502912.0325712766 1501466.2699568828 176372.84090986327 1510020.4820803343 779789.4816964844 2.0293554556724076 2.099352673874 2.096784565910779 1.9400086533976084 1.95716394532148 1.9273304755298708 1.925476433319339 0.2261800717369928 1.9364463326629944 1.0 19.572725169302313 1.8767898208185638 9.292849554835763 0.9859494785538035 2.003338742604989 0.5510909140444469 0.38882316571085673 0.217692174179479 15.56380973701202 0.15212001658795782 0.09620026278762987 75.2991061411393 -1.8767898208185638 1.0173892640511855 DVKPKPIADAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVKPKPIADAK 11 2 E7EVA0;P27816-4;H7C4C5;B5MEG9;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 0 ; 97.69 0.003419 2200900000.0 4582300.0 3830800.0 3444700.0 3194100.0 3272900.0 5435700.0 5091500.0 4908000.0 8661300.0 5459800.0 False True 4557629.405941389 3958305.8622324937 3929683.8181308573 3598472.7325015464 3689684.4150018618 5059942.853261457 4845204.693581196 5274259.8823190145 6526838.670473883 5111350.889630043 0.89166827016082 0.7744148166902691 0.7688151142398455 0.7040159852461239 0.7218609120511621 0.9899423777630131 0.9479303609171487 1.0318720033522806 1.2769302697875027 1.0 22.28527320377573 2.227396516360771 1.2534644047919012 1.1110389785839991 0.7707745281173883 0.6950706210357465 0.0927132201056263 0.25668141093782226 0.7787724490630343 0.059699310078832994 0.03380304754238665 168.80935728177494 -2.227396516360771 -0.3402644504666108 DVKPSNILVNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVKPSNILVNSR 12 1 P36507;G5E9C7;Q02750;Q02750-2 P36507;Q02750 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 0 110.77 0.0013255 944800000.0 442130.0 507000.0 508510.0 448660.0 469580.0 589580.0 534100.0 509520.0 709730.0 602280.0 False True 439749.6212052608 523875.18851202825 580103.7879518457 505460.3099978538 529378.2295812811 548823.7223220355 508263.5425398634 547542.9696901351 534826.5513947599 563841.9747621499 0.7799164320654985 0.9291170433577934 1.0288410829941415 0.8964573987438171 0.9388769429672084 0.9733644299070681 0.9014290622018136 0.9710929554705637 0.9485397954282674 1.0 19.10493135661455 4.719839910778792 4.248008606814823 0.9534660543122259 0.7692119986500285 0.6520409043916011 0.03853279397870865 0.1115427940596992 4.56760227507362 0.008680156083076554 0.06010873900914821 52461.40418711248 -4.719839910778792 -0.18425405566219732 DVLDGHLR ddPTM_BT-474_Trastuzumab_2h_R1 5 DVLDGHLR 8 0 P15924 P15924 DSP Desmoplakin 0 ;;;; 166.82 0.00031624 1320560000.0 2094260.0 2332340.0 2186784.0 2131861.0 1874373.0 2518420.0 2518280.0 1943456.0 2798600.0 2459510.0 False True 2082984.7368541607 2409970.5269706985 2494664.179332733 2401754.3840153646 2113063.2912708246 2344327.5531230043 2396461.175636188 2088486.5553896036 2108922.52931872 2302541.966107548 0.9046457209096825 1.0466565050472276 1.0834391798512875 1.0430882126659065 0.9177089157870866 1.0181475897640617 1.0407893584182575 0.9070351750939829 0.9159105720378499 1.0 21.134796020426236 1.7347267684394367 11.490643987269875 0.9343948205935625 1.0104713183514675 0.21320222523470067 0.05820869371501277 0.11555407406426865 81.74739070692414 0.027664141194755982 0.015109686151606454 54.290865905750124 -1.7347267684394367 0.07607649775790504 DVLDVYIEHR ddPTM_BT-474_Trastuzumab_2h_R1 6 DVLDVYIEHR 10 0 P33993;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 ;;;;; 182.28 1.7948e-06 2360850000.0 2945510.0 3136040.0 2810700.0 2710340.0 2659660.0 3309470.0 3251120.0 2763120.0 3485510.0 3212030.0 False True 2929651.701436926 3240421.1956237904 3206422.128957643 3053468.766102578 2998351.9359601154 3080694.1285544108 3093850.9051155252 2969318.045239064 2626552.76394114 3007035.495442764 0.9742657530570841 1.0776132175808129 1.0663067109839757 1.015441543915988 0.9971122524174362 1.0244954318707837 1.0288707631833187 0.9874569321642988 0.8734691585522503 1.0 21.519910467098747 1.5015499282629774 4.279884159271558 0.9341273609759299 1.0274984425724385 0.4367003927750268 0.0402271389537936 0.14819482454233038 5.815653361817982 0.024695244334589635 0.009980218504260358 31.735834909521966 -1.5015499282629774 0.09337108159650864 DVLFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVLFLK 6 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 ; 119.7 0.04836 1034336000.0 1239350.0 1314480.0 1156460.0 1121700.0 1097510.0 1410580.0 1466020.0 1212270.0 1640990.0 1383140.0 False True 1232677.4773047285 1358231.67218006 1319279.5158694834 1263707.104989509 1237271.3930485777 1313069.9247481553 1395103.0118597462 1302735.7431823302 1236590.002639436 1294866.8210342692 0.9519724015479312 1.0489354195477636 1.018853440708068 0.9759359684420121 0.9555201916906888 1.0140578964710414 1.0774104249156788 1.0060770127245795 0.9549939673731969 1.0 20.30437229154964 2.516116086398733 24.755317896323245 1.0163006694152772 0.9933477578926672 0.051412394275374584 0.03879393275457941 1430.2798516560742 907989.2581216018 0.013054707577033834 0.0123062509900383 328.1830043169636 -2.516116086398733 -0.02295291152261003 DVLLPWYNAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVLLPWYNAYR 11 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 116.3 0.0023423000000000003 2053610000.0 1549780.0 1693600.0 1542920.0 1551080.0 1470750.0 1492030.0 1446130.0 1283790.0 1937730.0 1526230.0 False True 1541436.1566767455 1749970.4521971825 1760149.724698946 1747446.5689641866 1658041.294681778 1388889.4779608336 1376175.1671469258 1379592.9287535304 1460202.405751717 1428824.6947287584 1.078814050711354 1.2247621829698212 1.23188641069301 1.222995777866167 1.1604231791336257 0.972050303361039 0.9631518633628968 0.965543872417061 1.0219605044192739 1.0 20.446397489564788 2.7911598041254693 4.242567969018339 0.9785333678158177 1.1943084074887915 0.8351144275848937 0.04428581369597984 0.08036545630768784 3.075835211562792 0.01401499017995004 0.01462057500909816 618.2438489018165 -2.7911598041254693 0.21577503967297385 DVLLQVDDER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVLLQVDDER 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 154.24 3.451e-05 141069000.0 271360.0 275850.0 244290.0 254040.0 251520.0 276720.0 250980.0 229070.0 296310.0 278600.0 False True 269899.0279109304 285031.50049515377 278683.90859325544 286201.43795269204 283549.5811241617 257590.99772881347 238839.13856329292 246164.36659389085 223288.3708505787 260819.50947854 1.0348115002997404 1.0928304445669004 1.0684933391310794 1.0973160655232366 1.0871486634227103 0.9876216631333241 0.9157257409187191 0.9438111707442844 0.856103024259965 1.0 17.9926922626225 2.5385015260013692 2.953384141190076 0.9263109456608243 1.077860436072255 0.7795762835789973 0.036968395024387486 0.11022724103506956 1.903941904360607 0.012491904285520727 0.011135415476129578 345.54254372513896 -2.5385015260013692 0.15154949041143073 DVLLQVDDERR ddPTM_BT-474_Trastuzumab_2h_R1 6 DVLLQVDDERR 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;;; 264.84 1.078e-20 7999880000.0 4906380.0 5226050.0 4572170.0 4724990.0 4407960.0 5018440.0 5128470.0 4668430.0 5846610.0 5113570.0 False True 4879964.595230067 5399995.915036065 5215891.793985936 5323173.249535861 4969287.577974148 4671527.054937073 4880386.31344208 5016811.952407203 4405791.306060212 4787217.58465246 1.0193738865922761 1.1280030246271102 1.089545587129313 1.1119555682201794 1.0380325293559653 0.9758334507112683 1.0194619791438588 1.0479598772553829 0.9203240145559545 1.0 22.1907559490533 3.0406601076082693 4.6690888501681185 1.00238323921628 1.0897645926816248 0.535241876833704 0.040952697580272986 0.163376942307943 8.151357364682507 0.01199574054097964 0.014195895645218466 1098.1460597127732 -3.0406601076082693 0.08738135346534492 DVLS(ph)PLRPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVLSPLRPSR 10 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 DVLS(1)PLRPSR;DVLS(1)PLRPSR;DVLS(1)PLRPSR;DVLS(1)PLRPSR 181.98 1.1071e-06 1685050000.0 686142.0 701074.0 575186.0 616434.0 673873.0 655952.0 628362.0 587433.0 726745.0 739951.0 True False 682447.8877095424 724408.8242818167 656167.1891936638 694474.4811955981 759686.7321918027 610607.5821849187 597965.729484054 631270.2333843325 547648.4326340785 692726.693676077 0.9851618162539858 1.0457353973723935 0.9472237683112749 1.0025230549587258 1.0966615537224218 0.8814552517741469 0.863205842856788 0.9112832508797736 0.7905692643773912 1.0 19.40192674245521 2.7117397680981505 24.19205062786117 0.8840309554867014 1.0126332750851923 0.519353616349119 0.06054644592587985 376.7611177547141 339832.90244892874 0.01852531792470705 0.017471276672091883 514.9200089135218 -2.7117397680981505 0.1286023195984909 DVLSNAHIQNELER ddPTM_BT-474_Trastuzumab_2h_R1 2 DVLSNAHIQNELER 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 ; 209.6 6.405300000000001e-09 874770000.0 535020.0 663170.0 613940.0 642760.0 604430.0 630250.0 642590.0 586340.0 646510.0 611590.0 False True 532139.5117663108 685243.2125552694 700377.4155378568 724133.3500963331 681400.5777627104 586682.3009489181 611505.4667678165 630095.6681741906 487186.2732901607 572557.8025914574 0.9294074927593177 1.1968105393966966 1.2232431596737905 1.2647340527346387 1.1900991911709509 1.0246691221279873 1.068023986399413 1.1004926757129336 0.8508944792737151 1.0 19.127061822323263 2.7346426316542636 24.07839255101679 1.0269726820460594 1.1720928400461772 0.33569082446381715 0.10481263649193134 256.5652582010553 1576742.2738332832 0.03381313678407181 0.033035438522214376 542.8034904065051 -2.7346426316542636 0.1451201580001178 DVLSPLRPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVLSPLRPSR 10 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 91.656 0.0091207 332730000.0 194920.0 270670.0 235740.0 253300.0 266090.0 250580.0 273230.0 241710.0 298700.0 275330.0 False True 193870.57237764812 279679.08732652967 268930.1429111874 285367.75402856566 299974.984261006 233257.99440187207 260012.82106003922 259747.62757851044 225089.387374938 257758.20367812773 0.7521412300798834 1.0850443684647002 1.0433427106242967 1.1071141478969764 1.1637844304486074 0.9049488670907639 1.0087470247299166 1.0077181787892462 0.8732578989261405 1.0 17.975658819459515 -0.5085825670585304 7.717041418258354 0.9999944351987462 1.0048596468762343 0.0 0.11610971996148203 0.0 0.0 0.10805034194308827 0.025467709832494325 0.31003978920487074 0.5085825670585304 0.004865211677488102 DVLSVAFSSDNR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVLSVAFSSDNR 12 0 P63244;J3KPE3;D6RHH4;H0YAF8;D6R9L0;H0Y8W2;D6R9Z1;D6RFX4;E9PD14;D6RFZ9;D6RAU2;H0YAM7 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ;;; 248.09 2.4112e-16 1751400000.0 1106410.0 1715620.0 1564880.0 1702470.0 1542320.0 1465490.0 1677550.0 1390230.0 1541230.0 1609360.0 False True 1100453.211493706 1772723.374585808 1785201.5018192036 1918002.5274418164 1738725.309953152 1364184.1256923934 1596400.4976366733 1493976.0220449003 1161414.5179239204 1506649.2669575838 0.7303977346472148 1.1765998985055857 1.184881937004561 1.273025228568882 1.154034550764562 0.9054423983141916 1.0595700888371495 0.9915884571209629 0.7708592460069987 1.0 20.5229121802132 2.7430034185788843 24.823792879296438 0.9583726017170588 1.121740287804937 0.2038577177110208 0.15333474161708385 561.5212256473003 3137456.279285967 0.04795661724875738 0.04928069973799702 553.3544649663231 -2.7430034185788843 0.1633676860878781 DVLSYHIPFLVSSIEDFKDHIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVLSYHIPFLVSSIEDFKDHIPR 23 1 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 ; 175.86 6.649800000000001e-13 236050000.0 119329.0 157996.0 157889.0 161207.0 149898.0 186023.0 180663.0 153621.0 228914.0 176158.0 False True 118686.54592269813 163254.801349401 180118.39880421027 181615.78967107376 168986.6217849458 173163.66786104013 171923.640490319 165084.97909163203 172501.21199044713 164915.44562354853 0.7196812007143538 0.9899303290369886 1.0921863511521257 1.101266100239313 1.0246864455054776 1.050014855832969 1.042495685229921 1.0010280023647422 1.045997913283481 1.0 17.331366999233783 4.722222118288271 3.400262177871616 1.043880774741844 0.6836621752610254 0.9039703594362454 0.03160448422735669 0.08246715638092571 1.6319289248920494 0.008177009154179102 0.0753843354440751 52749.95801307529 -4.722222118288271 -0.3602185994808186 DVMEGVTVDDHMMK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVMEGVTVDDHMMK 14 0 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-3 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 155.98 5.6970000000000015e-06 128810000.0 110700.0 107260.0 73715.0 88362.0 95185.0 104200.0 103730.0 97078.0 132050.0 113180.0 False True 110104.00349992613 110830.08425996092 84093.43125773386 99548.62014004013 107306.24554430394 96996.89926041625 98712.18361291895 104322.45331209569 99508.04687934558 105956.75550172692 1.0391409493293857 1.0459935634604682 0.7936580434115243 0.9395212194697454 1.0127362341002883 0.9154385560516277 0.93162708829179 0.9845757622353339 0.9391382966395546 1.0 16.69311604721665 -1.0201546250528075 3.754420275173688 1.0000090773614698 0.9547699111305461 0.035084509071655834 0.06942993580285614 85352617553.31207 104660690880.02002 9230263.835311886 0.016667641702753765 0.09546526335213464 1.0201546250528075 -0.04523916623092372 DVMQNHLLQMLCLVAMEKPASTNSDDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVMQNHLLQMLCLVAMEKPASTNSDDVR 28 1 E7EUI8;E7EM57;P11413;P11413-3;P11413-2 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 189.78 3.3791e-18 744110000.0 581240.0 464610.0 516890.0 485320.0 481770.0 585950.0 557030.0 474650.0 699600.0 605740.0 False True 578110.6684218353 480074.2629873245 589663.6191115793 546761.4622390188 543120.5538254908 545444.6556779356 530084.3308387569 510070.7932238631 527192.954159714 567081.1545998949 1.019449621509151 0.8465706523540564 1.0398222799832195 0.9641679287064076 0.9577474924355235 0.961845850904312 0.9347592078117264 0.8994670147057602 0.9296605078186313 1.0 19.113195687489146 2.2024919729718166 4.8261859059328405 0.9285574002412933 0.9627202205895413 0.025906010977877703 0.05351794979520298 0.5154186475772948 27.922020261563457 0.01925145004367103 0.01440572605620439 159.40134184247273 -2.2024919729718166 0.034162820348248024 DVNFEFPEFQL ddPTM_BT-474_Trastuzumab_2h_R1 4 DVNFEFPEFQL 11 0 P62081 P62081 RPS7 40S ribosomal protein S7 0 ;;; 117.09 0.0020967 130595000.0 371941.0 445220.0 388245.0 407870.0 406275.0 423581.0 409805.0 399621.0 496200.0 433650.0 False True 369938.51098253013 460038.8785588268 442906.5213139649 459506.3001801468 458011.7130694133 394299.8424724212 389981.1665428734 429442.7482543205 373918.15873935126 405974.0857335566 0.9112367611200759 1.1331730145474195 1.0909723967077232 1.1318611614085234 1.1281796773846529 0.9712438708001739 0.9606060589759431 1.0578082772903061 0.9210394748810548 1.0 18.631028114219454 2.7296459960497512 24.80168976416415 0.989862376267965 1.0856819784077052 0.3269236640870463 0.06878349022174163 709.0817591209576 1972758.069328058 0.02175947099859383 0.020782240224144908 536.5942271076967 -2.7296459960497512 0.09581960213974017 DVNQQEFVR ddPTM_BT-474_Trastuzumab_2h_R1 3 DVNQQEFVR 9 0 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 ;; 192.6 8.0367e-05 6189700000.0 1744240.0 1970760.0 1897270.0 1955620.0 1721630.0 1929060.0 2012730.0 1766650.0 2363500.0 2007480.0 False True 1734849.2056432823 2036355.555250423 2164389.1246335334 2203201.2914857646 1940869.3755995166 1795708.622718793 1915366.5605247335 1898486.3938669297 1781047.0942774205 1879360.9077099042 0.9231059337917608 1.083536188763139 1.1516623101791292 1.1723141002067965 1.032728395933575 0.9554889725289404 1.0191584557639353 1.010176590392279 0.9476876351800443 1.0 20.841810714190224 3.0057963154363 24.884860005073936 0.9919965690871889 1.0895060492611566 0.3204470537433284 0.06547796128063924 176.29868808927063 756880.1220187083 0.01962842227186564 0.023395961786581296 1013.4359717357963 -3.0057963154363 0.09750948017396766 DVNSSS(ph)PVMLAFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVNSSSPVMLAFK 13 0 C4P0D6;C4P0D8;Q99598;C4P0D4;Q5VVQ1;Q9NRI2 C4P0D6 DISC1;TSNAX;TRAX Translin-associated protein X 1 DVNSSS(1)PVMLAFK;DVNSS(0.201)S(0.799)PVMLAFK;DVNSS(0.038)S(0.962)PVMLAFK;DVNSS(0.001)S(0.999)PVMLAFK 278.33 2.7711e-32 484666000.0 1385550.0 1403340.0 1243240.0 1195980.0 1169710.0 1386770.0 1457360.0 1345960.0 1803040.0 1431150.0 True False 1378090.3527490755 1450049.3235630551 1418277.3855642022 1347390.9453734085 1318665.6350856503 1290905.854005445 1386861.9291441583 1446402.3698463927 1358704.9514981862 1339812.7817308418 1.028569343075519 1.0822775714154658 1.0585638567591478 1.0056561362497056 0.9842163420639467 0.9634971927479179 1.0351162103055442 1.0795555838613904 1.0141006042224336 1.0 20.353599989605218 3.7496903972622793 22.923033371251243 1.0171424248333691 1.0590510045289114 0.2828839501660053 0.031755771663834545 386.7958831487707 796642.8326765826 0.00965853990531228 0.017165281928610006 5619.405824267048 -3.7496903972622793 0.04190857969554229 DVPEDVAQEMVESGYVCEGDHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVPEDVAQEMVESGYVCEGDHK 22 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 0 236.04 1.7578999999999994e-30 74363000.0 94367.0 94213.0 88166.0 93700.0 93919.0 100850.0 109190.0 91813.0 131150.0 106460.0 False True 93858.93855715923 97348.8227520388 100579.00644739029 105562.41039272257 105879.0279484738 93878.47687536434 103908.06255369342 98664.55227696724 98829.83981996341 99665.63165500847 0.9417382602063964 0.9767541843211381 1.0091643907454824 1.0591656184764446 1.062342416240063 0.941934298879715 1.0425666383510224 0.9899556209957464 0.9916140416594343 1.0 16.60480847605937 4.465529574059331 2.6431996609366686 1.013109139864092 0.9428334555795972 0.3022171994336573 0.03417473354908835 0.38038622845527853 4.795230171415889 0.008709904245742263 0.04475578763176516 29209.86663244752 -4.465529574059331 -0.07027568428449471 DVPIDHSDLVADLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVPIDHSDLVADLLK 15 0 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 0 ; 160.27 1.7183e-06 124209000.0 128356.0 115874.0 98370.0 94883.0 103128.0 142853.0 129698.0 122851.0 176416.0 135341.0 False True 127664.94555769223 119730.79604268783 112219.64095263222 106895.17807142674 116260.73951245449 132977.9083497909 123424.01224552553 132018.7654447379 132940.64065328764 126703.42150874018 1.0075887772997962 0.9449689252032443 0.8856875340567749 0.8436644946012998 0.9175816890188293 1.0495210529150383 0.9741174372075783 1.041951068666532 1.0492269196070385 1.0 16.95109595808714 2.748640076310207 23.921403368521528 1.0228057358671507 0.9151552767980766 0.5683041203195206 0.0448184751572496 293.5984586593418 696791.1917042371 0.014601731197902148 0.015305004260024705 560.5831973808442 -2.748640076310207 -0.10765045906907411 DVPLHALYDNVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVPLHALYDNVEK 13 0 P08243-2;P08243;P08243-3;F8WEJ5 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ;;; 242.4 6.2349e-17 3561430000.0 5037010.0 4934040.0 4386810.0 4491960.0 4523490.0 5081460.0 4912140.0 5182150.0 7232100.0 5447190.0 False True 5009891.29782442 5098266.538709831 5004434.717163936 5060641.675428968 5099529.638674192 4730190.630670196 4674521.022002922 5568868.347424513 5449845.860175044 5099545.67062601 0.9824191450391336 0.9997491674751446 0.981349131941317 0.99237108603201 0.9999968561999729 0.9275709908662368 0.916654408828755 1.092032252893009 1.068692431085931 1.0 22.281937289362812 1.7126740048835738 10.522852252503462 1.0592918414871595 0.9731685914392976 0.5403626463981928 0.03453158599436305 0.0807789704221 21.47328214576099 0.016927208531469454 0.009183912144456281 51.60288763309154 -1.7126740048835738 -0.08612325004786192 DVPLTIKDPAVGFLETISPGYSIHTYLWR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVPLTIKDPAVGFLETISPGYSIHTYLWR 29 1 P04062-4;P04062-5;P04062-2;P04062 P04062-4 GBA Glucosylceramidase 0 ; 204.92 1.3894999999999993e-25 767990000.0 303698.0 477780.0 459330.0 443990.0 492080.0 485900.0 515170.0 481180.0 525510.0 445450.0 False True 302062.92371202 493682.61847589037 523999.67143206886 500199.08847667923 554743.471213333 452310.87668556836 490249.2589594853 517088.0949825311 396005.10197322886 417020.9996310685 0.7243350430296076 1.1838315550359408 1.2565306588772331 1.199457794497632 1.3302530848664822 1.0846237409764021 1.175598493584737 1.2399569696489872 0.9496047017382049 1.0 18.66976050870817 4.739149220004428 24.627869960869766 1.1762860798502464 0.7243348812273449 0.5691398708370672 0.11209663890449054 25.93039329997568 1084641.077409589 0.025091748532953 0.14976615927841938 54846.5380734184 -4.739149220004428 -0.45195119862290145 DVPLVHLDEITLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVPLVHLDEITLFK 14 0 Q96ME1-4 Q96ME1-4 FBXL18 F-box/LRR-repeat protein 18 0 ; 171.87 2.9469e-06 394300000.0 773200.0 871680.0 822110.0 759320.0 778910.0 981500.0 904310.0 880630.0 1150130.0 954770.0 False True 769037.1771105968 900693.3418583128 937855.9420917814 855449.8341451668 878099.5715387271 913651.2152024792 860565.0705003244 946347.082348531 866695.8724524175 893835.7611802787 0.8603786182095805 1.0076720813552804 1.0492486235428482 0.957054831880496 0.982394763864927 1.0221690101054302 0.9627776241174087 1.0587482884986756 0.969636604501006 1.0 19.769650240634668 4.73949833664306 24.660134687360355 1.003853234063643 0.8603785630799557 0.6184825160051717 0.03308722907578587 40.53586874914083 1065817.5657774583 0.007626699934929069 0.04635543928550064 54890.6453279834 -4.73949833664306 -0.14347467098368727 DVPNETLQVEEDDRPELPWWK ddPTM_BT-474_Trastuzumab_2h_R1 5 DVPNETLQVEEDDRPELPWWK 21 1 O95373 O95373 IPO7 Importin-7 0 ;;;; 327.3 4.9605999999999996e-80 3490540000.0 1619272.0 1620465.0 1550819.0 1427337.0 1538046.0 1866769.0 1945043.0 1682590.0 2185121.0 1984436.0 False True 1610554.0194700304 1674401.1979332212 1769160.8352396062 1608037.7178518407 1733907.041387135 1737723.6529315547 1850953.8393041836 1808153.409818897 1646627.2086712823 1857787.5955188666 0.8669204290925488 0.9012877478415788 0.9522944600916514 0.865565967676045 0.9333182359325999 0.9353726212421076 0.996321562146735 0.9732831752027566 0.8863377130104 1.0 20.82515413433399 2.7809425556111145 2.270542449409621 0.9633604153852234 0.9012231975000053 0.3666537425904475 0.03779903046561876 0.3407515609046087 3.4604983337230437 0.013056751410982047 0.013326453683166827 603.8687500156759 -2.7809425556111145 -0.06213721788521809 DVPPDILLDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 4 DVPPDILLDSPER 13 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER 187.08 7.6195e-06 797065000.0 536549.0 611351.0 575632.0 635456.0 513392.0 648291.0 649553.0 516396.0 747710.0 657757.0 True False 533660.2798001979 631699.448465517 656675.9821169628 715904.6644452289 578769.4280872121 603476.1690828649 618131.6398565731 554932.0917257555 563446.8893006856 615778.3851259012 0.8666434105040671 1.0258551838196799 1.0664160970552736 1.1626011593421812 0.939898902052039 0.9800216825725037 1.0038215935919719 0.9011880006348304 0.9150156986843311 1.0 19.23205170164584 2.4043279857589024 1.3729406125142036 0.9366849108178925 1.0249232003138775 0.11683829006300905 0.07772016213415835 0.7653294862381151 2.9005590915426 0.04315304483085746 0.02971259808943929 253.70439211058627 -2.4043279857589024 0.088238289495985 DVPPDILLDS(ph)PERK ddPTM_BT-474_Trastuzumab_2h_R1 7 DVPPDILLDSPERK 14 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK 254.58 1.7987e-24 1412410000.0 1210070.6 1128327.2 1009521.5 997748.7 998920.8 1279189.5 1208757.6 1168054.3 1658137.9 1234695.7 True False 1203555.7143410826 1165882.8887638035 1151653.3522818196 1124063.5831185197 1126127.4428125478 1190762.1407531884 1150285.3769855518 1255220.443125555 1249512.0324545219 1155896.3633498277 1.0412315087255197 1.0086396373676914 0.9963292461136293 0.9724605239356793 0.9742460297642874 1.0301634112787745 0.9951457703803003 1.085928187790022 1.0809896735321431 1.0 20.140580622194083 1.7484183632053905 24.999979135550728 1.0627255044347284 1.0014033460571379 0.3920132463153678 0.029853529920514255 2.1212058885945164 5390.788649604677 0.013605722096592375 0.0075449969416172945 56.02970852466277 -1.7484183632053905 -0.061322158377590474 DVPYPPPLS(ph)PAIEAIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVPYPPPLSPAIEAIQK 17 0 G3V3Y1;Q8N8N7;G3V2R9 G3V3Y1 PTGR2 Prostaglandin reductase 2 1 DVPYPPPLS(1)PAIEAIQK;DVPYPPPLS(1)PAIEAIQK 99.451 0.001655 225998000.0 151900.0 160212.0 155467.0 149915.0 154733.0 180160.0 174993.0 159451.0 206042.0 188000.0 True False 151082.1872776765 165544.55956980085 177355.40225661156 168894.2236288689 174437.33037565558 167705.9632510229 166527.92005182215 171350.043295772 155265.70992134884 176001.67904510227 0.8584133293351146 0.9405851152555104 1.0076915357788285 0.9596171158434688 0.991111740081492 0.9528657008325842 0.946172337419279 0.973570503562422 0.882183117591511 1.0 17.425229666586247 4.694113722294188 3.683515766347357 0.9636795523309294 0.8514270265243586 0.4693832391485496 0.0335794754703963 0.1925020127949828 4.725463214425097 0.007687793939356499 0.05426067281760054 49444.014178844045 -4.694113722294188 -0.11225252580657075 DVQEIFR ddPTM_BT-474_Trastuzumab_2h_R1 8 DVQEIFR 7 0 O00148;O00148-2;O00148-3;K7EQN7;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;A0A140T9K1;A0A140T973;A0A140T9L4 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ;;;;;;; 176.41 0.0017515 13271960000.0 7756130.0 8794090.0 8000270.0 7982030.0 8929630.0 8557830.0 8357220.0 7777100.0 9682630.0 8501640.0 False True 7714371.857867044 9086795.969510345 9126638.476406567 8992554.179584026 10066765.450436335 7966247.355064953 7952949.340919294 8357466.693313606 7296475.577094731 7959058.056579805 0.969256889826243 1.1416923843140245 1.1466983167513793 1.1298515622900656 1.2648186982521223 1.0009032850915323 0.9992324825856169 1.05005725977893 0.9167511438194231 1.0 22.92416626924987 2.603832000456708 24.12899027728783 1.0013665358353812 1.1320531181116875 0.4635459738965425 0.07347030816765535 10.129586080265458 1892.7377363705862 0.023532407207076805 0.02218659819055736 401.63541486426857 -2.603832000456708 0.13068658227630636 DVQFEHGYR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVQFEHGYR 9 0 A0A0C4DFM1;Q92544 A0A0C4DFM1 TM9SF4 Transmembrane 9 superfamily member 4 0 98.04 0.0062832 298550000.0 151400.0 216070.0 222960.0 191230.0 198480.0 209190.0 220370.0 170150.0 216130.0 202070.0 False True 150584.87922212147 223261.75933292662 254350.82999693917 215439.69839274648 223755.2515168715 194729.1876802924 209709.86120484883 182847.45700419313 162867.65749362324 189173.7195991691 0.7960137356350997 1.180194372696086 1.3445357554731738 1.138845812458681 1.1828030446881075 1.0293670182776684 1.1085570535336131 0.966558448983398 0.8609423012811479 1.0 17.52935215488253 1.7878258594465721 1.71302026519792 0.9223235212032704 1.1328575409900778 0.23865827420370478 0.13563538244350357 0.4692832650178949 2.6710648416614093 0.09848007924157791 0.04095439902621862 61.351595223440555 -1.7878258594465721 0.2105340197868074 DVQGTDASLDEELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVQGTDASLDEELDR 15 0 A0A087WYB4;Q9UJZ1;Q9UJZ1-2 A0A087WYB4 STOML2 Stomatin-like protein 2, mitochondrial 0 ; 321.67 2.6660000000000006e-56 515680000.0 334350.0 376360.0 388810.0 333360.0 416760.0 693280.0 345060.0 305660.0 473370.0 419140.0 False True 332549.8967497775 388886.915085576 443551.06840289664 375563.3418198288 469831.9156699484 645355.1854055787 328368.129542792 328469.9013100308 356714.3063330239 392390.12635619205 0.8474981260051009 0.991072121760179 1.1303828476057607 0.957117207069862 1.1973591691332686 1.6446774321221265 0.8368409587470503 0.837100322478202 0.9090807397360874 1.0 18.581929214168852 DVQGTDASLDEELDRVK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVQGTDASLDEELDRVK 17 1 A0A087WYB4;Q9UJZ1;Q9UJZ1-2 A0A087WYB4 STOML2 Stomatin-like protein 2, mitochondrial 0 ;;; 281.67 4.9986e-36 1328840000.0 669790.0 714830.0 717520.0 635560.0 828970.0 1400920.0 768760.0 634390.0 1273800.0 977130.0 False True 666183.9250606643 738622.6844261391 818540.5792043578 716021.8308345646 934534.4158098598 1304077.6978109605 731572.141851611 681731.4031671467 959889.0580455157 914768.7268369189 0.7282539351385465 0.8074419935409726 0.8948060369692588 0.7827353623143853 1.0216073072822314 1.4255818542465828 0.7997345344120325 0.7452500103763199 1.0493243044770602 1.0 19.803047519669892 3.240945264425444 24.995592373189535 0.9824001309393469 0.8101399800015107 0.23766275073433674 0.17520694197097622 123.76615871562646 1297288.9834503217 0.05538559168358322 0.07159193776493207 1741.5873615251903 -3.240945264425444 -0.1722601509378362 DVQIGDIVTVGECRPLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVQIGDIVTVGECRPLSK 18 1 P62280;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 ;;; 255.6 1.3181e-30 6029620000.0 4074200.0 3799020.0 3736810.0 3388070.0 3345050.0 4072030.0 4191210.0 3888540.0 5078040.0 4636120.0 False True 4052264.9598861714 3925468.0841439124 4262920.367065218 3816999.3146133553 3771022.2898353087 3790540.15062757 3988465.16032297 4178722.60040603 3826625.0842498424 4340238.8524179775 0.9336502201091136 0.9044359579328236 0.9821856612085567 0.8794445292997822 0.8688513277868212 0.8733482832438666 0.918950614457766 0.9627863217891878 0.8816623265141278 1.0 22.049343008702905 -1.12650024817153 5.024964126812838 1.000003175937802 0.914155644839342 0.34078161285644115 0.03670003755029654 1.5019929872848248e-06 2.6105529279419467e-07 0.03705720022414758 0.00873410951148415 0.07473082071522925 1.12650024817153 -0.0858475310984601 DVQIILESCHNQNILGTILHPNGNITELLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVQIILESCHNQNILGTILHPNGNITELLLK 31 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 308.67 9.269499999999999e-93 660660000.0 129885.0 171607.0 190445.0 179409.0 195696.0 205360.0 233000.0 168695.0 255560.0 235760.0 False True 129185.71359158008 177318.8352563777 217258.00062238556 202122.16100478056 220616.72561893272 191163.94656544208 221728.89985356346 181283.87751585295 192580.6623285543 220713.59495570933 0.5853092720342117 0.8033888229311853 0.9843435365455526 0.9157667022973391 0.9995611084274348 0.8661176789033 1.0046001013125534 0.8213534719156346 0.8725364759121409 1.0 17.751815970257887 4.625097781923911 2.778422928812765 0.9241679001275629 0.5612637459444118 0.7413832157217597 0.06280175069450372 0.16663559675830214 1.99345617254098 0.01534265012332543 0.12015082442759394 42179.145959186324 -4.625097781923911 -0.36290415418315114 DVQIPFVVELEVLDGHDPEPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 DVQIPFVVELEVLDGHDPEPGR 22 0 Q8N9L9 Q8N9L9 ACOT4 Acyl-coenzyme A thioesterase 4 0 ;;;; 212.01 2.6024999999999998e-23 268582000.0 182899.0 243608.0 216665.0 233429.0 238531.0 251288.0 242663.0 218323.0 293142.0 226309.0 False True 181914.29210598936 251716.34501585423 247169.54871405984 262981.08746598545 268906.5089659963 233917.05202832483 230924.46362731827 234615.37088173055 220901.08200155367 211865.76586711704 0.8586299507211875 1.188093526982229 1.1666327861061114 1.2412627702718528 1.269230580341401 1.104081403009859 1.089956476366998 1.107377446854166 1.0426464185823376 1.0 17.692790964441393 1.347572974468947 1.0764575552846039 1.0029573480242209 1.14882525009876 0.1459516264224514 0.1061982673687817 0.8326727385694577 1.9439843226893505 0.09824157198760274 0.033702516790053955 22.262450891607546 -1.347572974468947 0.14586790207453904 DVQLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVQLIR 6 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 111.28 0.065105 134190000.0 169180.0 214810.0 196160.0 227610.0 203150.0 201600.0 204370.0 171580.0 226110.0 205720.0 False True 168269.1536776651 221959.82099461264 223777.622946715 256425.40266262114 229019.94833561336 187663.86651535408 194483.84233078422 184384.17086558626 170388.22021877195 192590.773474247 0.8737134736112675 1.1524945717313548 1.1619332479426294 1.3314521668760526 1.1891532714896003 0.9744177414628239 1.0098294888295383 0.9573883916627081 0.8847164230406711 1.0 17.555179063486342 2.7293050569884865 22.162709147516345 0.965959456017577 1.1540066773248352 0.38886938944246496 0.11008195196267333 148.04808501189459 354503.26765799784 0.036695916782522806 0.035133663946554386 536.1731438371718 -2.7293050569884865 0.18804722130725815 DVQSMDELKDVYNHFLLYYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVQSMDELKDVYNHFLLYYGR 21 1 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 103.95 0.00025593 97939000.0 460140.0 368030.0 328940.0 366310.0 380020.0 591980.0 478760.0 575080.0 739290.0 536060.0 False True 457662.6573663601 380279.6560711665 375251.8928022656 412684.80844139 428413.2944449894 551057.8159710277 455600.54975919344 617995.3897970705 557101.8854784662 501848.191855944 0.9119543814112866 0.7577583465326625 0.7477398521941512 0.8223299697767 0.8536710929666274 1.0980567926987956 0.9078453547362267 1.2314389088692117 1.1101004138685484 1.0 18.93689149204165 2.730926752560759 1.4252216155790598 1.1037804624112204 0.7949173051022632 0.6437736453840703 0.09160792355595432 0.23099590022964142 0.9513262551082893 0.03860078016156524 0.03659692448686769 538.1790064180849 -2.730926752560759 -0.3088631573089572 DVSEELSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVSEELSR 8 0 P40222 P40222 TXLNA Alpha-taxilin 0 77.318 0.062561 0.0 189660.0 230000.0 213440.0 207950.0 198300.0 213610.0 213760.0 202900.0 284560.0 230370.0 False True 188638.891633207 237655.41096206402 243490.4967462622 234276.44867840642 223552.32958381553 198843.64348385317 203419.6121575009 218041.4283053234 214434.00090864516 215667.5893703204 0.8746742715675153 1.1019523687167874 1.129008292146148 1.0862849135672998 1.0365596900142298 0.9219913110932073 0.9432090039649461 1.011006934059651 0.9942801397962627 1.0 17.71844985831584 2.9412177905303087 7.823205523043533 0.9753977564439549 1.0581244892636825 0.20825702810240965 0.06892968602834439 0.4465885940361472 54.217505882147094 0.021286288459421824 0.022706713231006707 873.4092569296274 -2.9412177905303087 0.08272673281972764 DVSELTGFPEMLGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVSELTGFPEMLGGR 15 0 P31939-2;P31939;F8WEF0 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ; 169.23 2.813e-06 155948000.0 92363.0 118806.0 108154.0 118146.0 109694.0 115863.0 105069.0 95976.0 119153.0 114013.0 False True 91865.72787049394 122760.38589025632 123381.14310857956 133103.27148621765 123662.88069272338 107853.6635221651 99986.4110674423 103138.21647625296 89789.33971839955 106736.59272855968 0.8606769761155517 1.150124645654059 1.1559404319973787 1.2470256739852161 1.1585799914674877 1.0104656778434573 0.9367585053208165 0.96628732321016 0.8412235899898131 1.0 16.7036953375492 2.522158108544601 3.3743607161015485 0.9380553572136516 1.1254404559605842 0.40812010499180706 0.10095400678175369 0.24127280453333344 5.5660842016936085 0.03612656737450098 0.032191307619374734 332.78068283913575 -2.522158108544601 0.18738509874693254 DVSGFSDPYCLLGIEQGVGVPGGS(ph)PGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 0 Q70J99;Q70J99-3;K7EQ37;Q70J99-2;K7EN81;K7EIH3 Q70J99 UNC13D Protein unc-13 homolog D 1 DVSGFSDPYCLLGIEQGVGVPGGS(0.811)PGS(0.189)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.772)PGS(0.228)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.869)PGS(0.131)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.828)PGS(0.172)R 121.84 3.0757e-05 420497000.0 188033.0 208735.0 188024.0 190472.0 183013.0 221488.0 210849.0 198168.0 250996.0 220645.0 True False 187020.65122043013 215682.61829202817 214496.14486609463 214585.735670466 206318.62074696337 206177.05588667036 200649.42834860092 212956.30243671456 189141.39897408726 206563.2471963115 0.905391708151699 1.0441480816141988 1.038404206834742 1.0388379277681 0.9988157310040946 0.9981303967918643 0.9713704207888915 1.0309496259725588 0.9156585285199983 1.0 17.65622405969297 1.2516876209981227 24.998234831866014 0.9578292350896856 1.0062487708525607 0.14394851740282455 0.04382815216206495 341.32174043574145 649998.7952198436 0.02820190045083933 0.010163412373795692 17.85203053459453 -1.2516876209981227 0.048419535762875054 DVSGLHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVSGLHSK 8 0 P52732 P52732 KIF11 Kinesin-like protein KIF11 0 81.548 0.022576 85543000.0 105150.0 106300.0 105210.0 94523.0 95899.0 131600.0 120070.0 119250.0 155250.0 136560.0 False True 104583.88408326318 109838.13124029315 120022.65349828631 106489.60210833837 108111.16921209426 122502.80175307824 114261.75538805728 128149.04053923026 116990.71774341835 127844.623885102 0.8180546111759539 0.8591533058050853 0.9388165872829698 0.8329611279082328 0.8456450175742797 0.9582162943603743 0.893754871466069 1.0023811455255394 0.9151008011769162 1.0 16.964031968161624 2.424244681245874 1.3088731785562446 0.9673465970371496 0.8617683930918819 0.513070491782698 0.044717326838269594 0.36390812939874845 1.2532508727301694 0.023999471531136435 0.016660763234270865 265.61015865180315 -2.424244681245874 -0.10557820394526773 DVSLGDWEFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVSLGDWEFGK 11 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 210.27 3.0968e-08 138843000.0 365130.0 316860.0 297870.0 252820.0 275920.0 424240.0 364730.0 317620.0 457460.0 381450.0 False True 363164.1806497566 327406.49355408526 339807.50686754624 284826.9860777813 311056.7764940312 394913.2873535404 347086.61649609485 341322.4172416802 344725.11264994636 357105.53442422504 1.0169659824379371 0.9168339944156153 0.9515604607344743 0.7975989129852574 0.8710500020548827 1.1058727722892177 0.971944097858119 0.9558026531064757 0.9653311960167739 1.0 18.44599096743251 2.7964950403144 24.99999812234758 0.991349523572996 0.9071122915850737 0.3109015479115961 0.06552801879290855 370.4292058373254 159847.6782437019 0.020827539444195832 0.022090936655654064 625.8857162043307 -2.7964950403144 -0.08423723198792232 DVSLGDWEFGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVSLGDWEFGKR 12 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 160.52 0.00010876 1355440000.0 1666610.0 1756510.0 1561140.0 1618710.0 1616540.0 1797940.0 1869420.0 1695600.0 2261200.0 1810990.0 False True 1657637.1569377764 1814974.3735172818 1780934.9423278687 1823638.5200299264 1822396.7870167475 1673652.6396955154 1778989.0127220938 1822134.2820823404 1703957.5585276515 1695411.0677334545 0.9777199102243818 1.0705217206961306 1.0504443295328658 1.0756320722076538 1.0748996639812294 0.9871662817047506 1.0492965668204421 1.0747448313631092 1.005040954938216 1.0 20.693203679547214 1.1416601403017026 7.98278747534121 1.0008327770394727 1.0476412131577986 0.20053414706316885 0.03368742317771021 0.3796369660719222 27.04970140866804 0.03144869793936107 0.007881672584690674 13.856710394603251 -1.1416601403017026 0.04680843611832586 DVT(ph)PPPETEVVLIK ddPTM_BT-474_Trastuzumab_2h_R1 5 DVTPPPETEVVLIK 14 0 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DVT(1)PPPETEVVLIK;DVT(0.987)PPPET(0.013)EVVLIK;DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK 171.21 3.4113000000000004e-05 12951780000.0 1929200.0 1576460.0 1378340.0 1165500.0 1317850.0 1697340.0 1647110.0 1645910.0 2321420.0 1681600.0 True False 1918813.4015542702 1628931.5181098068 1572398.2912539511 1313052.1804985916 1485670.3859910807 1580006.8809085872 1567432.9967287648 1768736.1619616335 1749337.1464343106 1574278.8483098098 1.2188523040974364 1.0347160033679381 0.9988054485659401 0.8340658212541707 0.9437148873505722 1.0036385120748634 0.9956514364730271 1.1235215183514653 1.111199040952909 1.0 20.586259673983427 -0.1462777864150014 8.01430041442737 1.000000003841339 1.02526990338801 0.006224227042492814 0.09992813963280463 0.0 0.0 0.10264777994865663 0.02419431375847988 0.7140394611623677 0.1462777864150014 0.025269899546670915 DVTGS(ph)PPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVTGSPPAK 9 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 DVTGS(1)PPAK;DVT(0.025)GS(0.975)PPAK 141.08 0.00011282 1111010000.0 1065540.0 914820.0 756640.0 724480.0 750010.0 1044520.0 1068330.0 904260.0 1328200.0 1093370.0 True False 1059803.251032622 945269.230679633 863168.3351672217 816199.0937173928 845519.3278424473 972314.7909356027 1016650.7964830789 971740.4729392393 1000882.9069681705 1023590.1905188478 1.0353784755356226 0.9234840656302942 0.8432753099457608 0.7973885459997125 0.8260330507992285 0.949906319874701 0.9932205348389951 0.9493452379088096 0.9778160402854514 1.0 19.96520679594701 2.5503120119947944 6.537937830673565 0.973477833882005 0.8802937737134513 0.3423453225847073 0.06229895443088109 0.3055027446850531 22.509169635333233 0.02207779836260077 0.020668598233016748 355.0683908856638 -2.5503120119947944 -0.09318406016855374 DVTLENR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVTLENR 7 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 103.91 0.019241 735420000.0 557230.0 650170.0 575220.0 582670.0 556570.0 611690.0 640050.0 491230.0 683800.0 622990.0 False True 554229.9355940731 671810.5154139358 656205.9760981312 656435.9622574992 627445.8904511557 569405.3100633781 609088.336271558 527888.0770153974 515286.6524505609 583230.2448314275 0.9502763968529506 1.1518787329146671 1.1251233657949204 1.1255176974699428 1.0758116473066448 0.9762959227670964 1.0443359919504935 0.9051109432227306 0.8835046827852617 1.0 19.15370601052299 2.3382850184453745 1.2279971093886621 0.9275074022044943 1.095125497278864 0.4768652044830852 0.06555279797001919 0.36115513099044194 1.0753981251056821 0.03889369667907132 0.02442789119654579 217.91394271067136 -2.3382850184453745 0.16761809507436964 DVTLSKPSFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVTLSKPSFAR 11 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 0 130.44 0.0011263 0.0 269100.0 308020.0 272450.0 261620.0 288190.0 326660.0 295590.0 270320.0 348160.0 322820.0 False True 267651.1954998207 318272.2594979777 310808.5918221478 294741.0651754969 324889.2882640427 304078.7630749281 281291.1824365441 290492.6510571466 262360.63310498255 302217.3512198933 0.8856248472149361 1.0531237144832324 1.0284273572234557 0.9752618901124686 1.0750186478461101 1.0061591826131797 0.9307578843541536 0.9612044109465581 0.8681190277327557 1.0 18.205226966839895 2.2448206754713405 22.951244071246347 0.939188132361339 1.009212695042055 0.22937972862512168 0.05689325869428032 70.89656270021405 259929.39972376853 0.01910952961383143 0.015582242488550786 175.71978995806535 -2.2448206754713405 0.070024562680716 DVTNFTVGGFAPMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 14 DVTNFTVGGFAPMSPR 16 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 1 DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR 245.1 4.4567e-20 13205248000.0 4334324.0 4779390.0 4742334.0 3996125.0 4446519.0 4918382.0 4712855.0 4106740.0 6008310.0 4278432.0 True False 4310988.481172662 4938469.106947737 5410013.406093937 4502034.015268077 5012756.838067051 4578385.828965872 4484876.198795556 4413205.792403178 4527642.507729203 4005378.8068100824 1.07629981809535 1.2329593142479265 1.350687080307023 1.123997063052704 1.2515063068552192 1.143059383342605 1.1197133692249572 1.101819829100732 1.130390588783051 1.0 21.933507260613073 1.5069267831631175 0.5326598803996783 1.0097660336769982 1.2184505718518963 0.40269905326287214 0.07317555889828282 0.7612661221073489 0.5313895465695354 0.07334858928820635 0.04227097488276798 32.13118799713173 -1.5069267831631175 0.20868453817489807 DVTNNVHYENYR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVTNNVHYENYR 12 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4 E7EPK1 SEPT7 Septin-7 0 ;;; 256.95 3.4772e-21 9427400000.0 4394640.0 5323130.0 5449840.0 4682830.0 3495610.0 4421600.0 4982530.0 3630570.0 6261200.0 4940360.0 False True 4370979.746530407 5500307.164149966 6217130.101141538 5275675.797858624 3940755.2133962675 4115945.199326835 4741505.988787013 3901501.5690609054 4718211.155781588 4625061.995145008 0.9450640339780711 1.189239662068036 1.3442263277049573 1.1406713690317176 0.8520437601772545 0.8899221683184788 1.025176742228372 0.8435565994912859 1.0201400890916401 1.0 22.141041273220978 3.3158488465777336 6.485052773217624 0.9289676578346407 1.174076387573712 0.48131603154605074 0.10931349469811831 0.16624996977856332 11.11912049499837 0.030396765218070762 0.04113638417401254 2069.4209746766637 -3.3158488465777336 0.24510872973907116 DVVEQHK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVVEQHK 7 0 O75382;O75382-3;O75382-4;E9PMK8;Q9C040;Q9C040-2;A0A0J9YX34;C9J084 O75382 TRIM3;TRIM2 Tripartite motif-containing protein 3;Tripartite motif-containing protein 2 0 ; 113.14 0.0061974 648110000.0 907370.0 892830.0 792170.0 743230.0 826260.0 845520.0 1048730.0 862620.0 1202580.0 983950.0 False True 902484.8207382842 922547.3068228675 903700.6503349266 837322.8417949107 931479.3133732893 787071.1925399913 997998.9233623503 926993.0846956045 906220.2727464102 921153.4685980229 0.9797334011148521 1.0015131444133472 0.9810533001741184 0.9089938542697985 1.0112096899455658 0.8544408932616818 1.083423074855577 1.0063394605748697 0.9837885907607331 1.0 19.813082010710453 2.208879107908198 24.99999953258329 1.019872331036608 0.9597090417102574 0.2705689491741783 0.04982840079809169 283.57265432873737 238844.5357400381 0.017947212402259254 0.013256635771448212 161.76296845640425 -2.208879107908198 -0.06016328932635062 DVVHLDSEKDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVVHLDSEKDFR 12 1 Q14554;Q14554-2 Q14554 PDIA5 Protein disulfide-isomerase A5 0 ; 136.38 6.671699999999999e-05 705120000.0 980900.0 1271590.0 1110530.0 1141620.0 1124140.0 1340430.0 1354780.0 1255140.0 1704810.0 1288470.0 False True 975618.943388235 1313914.1044576112 1266882.9711002004 1286148.9749470633 1267292.5657002034 1247769.2291328167 1289244.1156378142 1348804.9202717775 1284682.4187836205 1206238.7414853356 0.808810818152698 1.0892653827713132 1.0502754782524966 1.0662474439871894 1.0506150417119644 1.0344297411608097 1.0688133876800106 1.1181906813993465 1.0650316347837503 1.0 20.202084046271462 4.741786369999009 24.938075784930792 1.0655550280828654 0.8088107196776038 0.8621009076539246 0.030111425227561432 100.74619987327371 778824.5043666814 0.007358862419440433 0.0527881254394967 55180.59384763998 -4.741786369999009 -0.25674430840526163 DVVHTSEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVVHTSEEAR 10 0 O43592;F8WDU6 O43592 XPOT Exportin-T 0 190.86 8.554600000000002e-07 421860000.0 92196.0 215780.0 211440.0 230090.0 236980.0 201250.0 216130.0 222360.0 167170.0 226010.0 False True 91699.62697993853 222962.10685823567 241208.91413057366 259219.37040834106 267157.9983094936 187338.06119154245 205674.9662032214 238953.6323212012 125973.19346323513 211585.84830310429 0.43339206149825077 1.053766632534112 1.1400049486534338 1.225126219391573 1.262645873776871 0.8853997689069166 0.9720639062239393 1.1293460041755325 0.5953762714922882 1.0 17.690883611975295 -3.1140720591285653 9.893604911332881 0.9999996756969995 0.9984149835815134 0.0 0.25624809060860015 0.0 0.0 0.0 0.055112188175277445 0.0007690028350005667 3.1140720591285653 -0.0015846921154861748 DVVICPDASLEDAKK ddPTM_BT-474_Trastuzumab_2h_R1 4 DVVICPDASLEDAKK 15 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 ;;; 236.43 1.6743e-17 5305700000.0 4205540.0 2994360.0 2752170.0 2546040.0 2420350.0 3898890.0 3848300.0 3629310.0 6264390.0 3710260.0 False True 4182897.83991942 3094025.462471157 3139651.613709525 2868368.4029486408 2728567.2259616116 3629368.9112998466 3662143.0270663816 3900147.5414627613 4720615.023025403 3473468.030286602 1.2042425044500211 0.8907597350812131 0.9038953536735062 0.8257938112394161 0.7855455130636319 1.0448833499125025 1.0543189098430283 1.1228396252551525 1.359049509557713 1.0 21.727945388187006 2.1202302147830814 1.7130109320998927 1.1731267809989359 0.9180566064921892 0.3524788438350752 0.13573559629924592 0.38314516412252925 2.1626359520042713 0.07786575843848277 0.04307045556885991 131.89557173652125 -2.1202302147830814 -0.2550701745067466 DVVNVYEPQLQHHVAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVVNVYEPQLQHHVAQK 17 0 Q16222;Q16222-3;Q16222-2 Q16222 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 118.53 9.5042e-05 204670000.0 185240.0 206950.0 194970.0 177650.0 167240.0 218050.0 206530.0 132170.0 233600.0 199870.0 False True 184242.68842209873 213838.20564608334 222420.08129038053 200140.47178513525 188537.02269085855 202976.71673448893 196539.35487878296 142033.19654566108 176032.41007963006 187114.12548268383 0.9846540871610955 1.1428223555782413 1.1886867478156482 1.0696171187976768 1.0076044350179558 1.0847749533119726 1.0503715546423105 0.7590725509325874 0.9407756342581453 1.0 17.513558948005297 1.8946855021603861 7.220504498793564 0.8782760523081581 1.0823902936896324 0.5027788838458491 0.07952853237057704 0.1844795012092521 11.120844595242836 0.03401390014380251 0.021085149832815935 78.46672057551177 -1.8946855021603861 0.20411424138147427 DVVQAYPEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DVVQAYPEVR 10 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;; 146.11 6.8042e-05 844080000.0 685780.0 678370.0 595030.0 622100.0 603040.0 674730.0 660920.0 608720.0 855050.0 728770.0 False True 682087.8366773208 700949.1353666757 678805.0519065243 700857.7962146504 679833.5695018857 628087.5032435763 628948.7746404171 654145.7774175279 644334.3845829943 682259.2746686132 0.9997487201747814 1.027394073473227 0.9949370820004365 1.027260195993775 0.9964445992062098 0.9205994356744374 0.9218618170429561 0.9587935286555971 0.9444127892522387 1.0 19.379960576142114 2.8903981093281446 5.188225046501595 0.9456474672534017 1.0121453943700505 0.6341757265056818 0.0229363822683437 0.13106051167258775 5.185679177026583 0.006721536399330419 0.007186809064878374 776.9590135458989 -2.8903981093281446 0.06649792711664881 DVWLEWSDAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DVWLEWSDAEK 11 0 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 0 162.36 0.0024318 0.0 101350.0 92536.0 95574.0 86137.0 88710.0 111710.0 124420.0 114640.0 140050.0 119000.0 False True 100804.34286104368 95616.0048208068 109029.98845589985 97041.93536817437 100006.69267463568 103987.75063705446 118401.32926944365 123195.01893012451 105536.5540738536 111405.31811897423 0.9048431848952728 0.8582714580886939 0.9786784894726689 0.8710709417349302 0.8976832916345564 0.9334181921728525 1.0627978203248618 1.105827091652479 0.9473206114015746 1.0 16.765458578216553 2.3292934895138533 4.50380100544625 1.045908038054773 0.9035468343131644 0.5862859305518546 0.04968582196606138 0.1315271288776893 4.762537914425142 0.01779967671932325 0.014550257761295477 213.44868791806937 -2.3292934895138533 -0.14236120374160854 DVYEDELVPVFEAVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 DVYEDELVPVFEAVGR 16 0 B7Z8Z7;A0AV96;A0AV96-2;D6R9D6;D6RBS9;D6REZ6;D6R9M7;D6RBP6;D6RFL5;D6RA49 B7Z8Z7 RBM47 RNA-binding protein 47 0 ;; 155.02 6.972800000000001e-07 170238000.0 287078.0 323112.0 277042.0 297056.0 286043.0 302996.0 315832.0 312413.0 376560.0 323423.0 False True 285532.40394536394 333866.5875946714 316047.10550776793 334663.2591421618 322468.8805403088 282050.59969586425 300553.9995645951 335726.8444610697 283761.833645486 302781.8672436389 0.9430300649926474 1.1026637448074776 1.0438112043659964 1.1052949180502576 1.0650204501210383 0.9315306833381377 0.9926420042939655 1.1088076294572853 0.9371823888553799 1.0 18.20791928338995 DVYHLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVYHLNR 7 0 I3L2Z5;A0A087WWR2;P56270-3;P56270;P56270-2;J3QSH4;Q14119;Q9HBE1-4;Q9HBE1-2;Q9HBE1-3;Q9HBE1 I3L2Z5 MAZ;VEZF1;PATZ1 Myc-associated zinc finger protein;Vascular endothelial zinc finger 1;POZ-, AT hook-, and zinc finger-containing protein 1 0 ; 134.06 0.0032115000000000004 466360000.0 319270.0 490350.0 481220.0 435570.0 391580.0 455120.0 436790.0 400190.0 640890.0 490090.0 False True 317551.085794232 506671.00332716596 548971.5931607769 490713.11734000174 441445.39192350215 423658.62563724146 415660.7990001627 430054.2099236442 482951.2469860192 458812.03661284095 0.6921158567210628 1.1043106171922639 1.1965065197799403 1.0695297380658735 0.9621486724333841 0.9233816722963113 0.9059500750432785 0.937321115414713 1.0526124173885778 1.0 18.80754371438225 3.151878068243324 7.014845544656806 0.9525242229752955 1.0346460841379426 0.02579776119246746 0.1285133397992603 0.6055565343840494 41.12072483382122 0.03768677860154768 0.04526438001670006 1418.6591655128514 -3.151878068243324 0.08212186116264708 DVYKEHFQDDVFNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DVYKEHFQDDVFNEK 15 1 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ; 202.63 3.493e-09 532460000.0 664950.0 704300.0 696950.0 778650.0 734120.0 948040.0 985780.0 835040.0 1538540.0 1049190.0 False True 661369.9830828902 727742.1997416589 795074.5020020029 877227.0101632164 827605.8305298563 882504.2262461118 938094.0553547028 897354.9250472013 1159387.4323797675 982229.7959432491 0.6733352885591983 0.7409082912647725 0.8094587491499193 0.8930975356136523 0.8425786246232683 0.8984702254920199 0.9550657689566806 0.913589598639144 1.1803627187529895 1.0 19.905701061791415 4.621186352903004 0.28110914160209066 1.0570292404979618 0.39775805542616033 0.7483393631076569 0.06715188266893188 3.938317998351078 0.27206837636075254 0.0820058451506001 0.8991658113648042 41800.96933773695 -4.621186352903004 -0.6592711850718014 DVYLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 10 DVYLSPR 7 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 1 DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR 139.38 0.0028279 134311370000.0 92054170.0 106773150.0 98742280.0 98018570.0 96453900.0 100865070.0 96595940.0 87977770.0 118029890.0 101552140.0 True False 91558560.57689977 110327029.75201787 112644334.74071644 110427710.91192964 108736732.43794426 93892505.12173542 91923225.34987481 94543117.93946399 88943005.12899674 95070995.48203883 0.9630546110585048 1.1604699119076887 1.1848443804503723 1.1615289221705063 1.1437424409686257 0.9876041020257745 0.9668903211099887 0.9944475437550818 0.9355430084436236 1.0 26.502501931095267 2.717596112707751 7.167628617813924 0.9768397247735445 1.1305190990927132 0.5963999003268572 0.05981872676031178 0.12611498808279406 30.738500894369025 0.019216022696432626 0.018559296320584916 521.9105942861373 -2.717596112707751 0.15367937431916867 DVYLSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 DVYLSPR 7 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 120.62 0.01051 229160000.0 188370.0 282700.0 299010.0 202860.0 129610.0 159940.0 227600.0 150010.0 386070.0 190430.0 False True 187355.8368498743 292109.498604241 341108.00895848905 228542.0552002958 146115.06524134293 148883.72425826258 216590.1184835663 161204.50793534535 290928.2215729569 178276.59436467447 1.050927843430909 1.638518503481815 1.9133639509667437 1.281952103778697 0.8195975796040652 0.8351277114578082 1.2149105677917509 0.9042382064220542 1.6318924119553653 1.0 17.44375778081792 3.4800999762886695 23.95299556830434 1.051539022220954 1.553522154904801 0.3318395149995156 0.2962762811463225 71.16150922282662 572239.4630597581 0.08025227828488943 0.11088136598369462 3020.647005127494 -3.4800999762886695 0.5019831326838471 DVYVPEASRPHQWQTDEEGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVYVPEASRPHQWQTDEEGVR 21 1 P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5;P49757-4;P49757-2;G3V4S6;G3V433;G3V3R1;G3V3M5 P49757-3 NUMB Protein numb homolog 0 ; 156.92 6.3132e-09 533140000.0 346120.0 341670.0 333220.0 334920.0 349020.0 382470.0 379590.0 350190.0 404370.0 381640.0 False True 344256.5283775469 353042.27940612315 380134.47959983896 377320.8376598785 393465.62819638575 356030.7491375367 361227.7815253826 376322.95602878905 304718.43178039347 357283.4084615575 0.9635390847279933 0.9881295102011693 1.063957828987013 1.0560827307503615 1.1012703609457457 0.9964939336830256 1.011039899895742 1.053289761338806 0.8528759650286983 1.0 18.4467093939967 1.2572834689453132 24.99997270998367 0.9264379273830897 1.031369954642248 0.39382651147522596 0.050953319540824465 197.13037987425452 263222.97881668305 0.03345009304201054 0.012168717534618461 18.08354074147467 -1.2572834689453132 0.10493202725915818 DVYVQLYLQHLTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DVYVQLYLQHLTAR 14 0 P42166;P42167;G5E972;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 0 ; 306.05 1.8102e-44 1308350000.0 455660.0 637690.0 633410.0 575500.0 660690.0 736800.0 661130.0 557820.0 725670.0 648580.0 False True 453206.77718858485 658915.1261582543 722588.6223015842 648358.2409926555 744824.9552835651 685866.7502406391 629148.6161381388 599447.3609525654 546838.3519798166 607187.0691227249 0.74640386832247 1.085192949036723 1.1900593063445728 1.0678064042592597 1.2266811879898922 1.1295806269912698 1.0361693259494875 0.9872531735872736 0.9006093505415039 1.0 19.211781541357578 -0.7918482192688914 4.922142167347092 0.9999999424977504 1.0508604437985207 0.003698745416579552 0.13322271663481913 8586597.631936798 1744486.4261599174 5.351480535745018 0.03140294374390773 0.16149228544505573 0.7918482192688914 0.050860501300770355 DWEAIASR ddPTM_BT-474_Trastuzumab_2h_R1 3 DWEAIASR 8 0 P49750;P49750-1;F8VU51 P49750 YLPM1 YLP motif-containing protein 1 0 ;; 178.65 0.00057812 284101000.0 514320.0 584380.0 540100.0 531830.0 492050.0 520670.0 528090.0 474550.0 611140.0 533640.0 False True 511550.95826632384 603830.7350348308 616141.3853666425 599159.6234702411 554709.6508911565 484677.30842534394 502544.2692002926 509963.33071607276 460532.73585644306 499582.638327811 1.0239566370412168 1.208670375447706 1.233312245255307 1.1993203476320382 1.110346133620386 0.9701644357530964 1.0059282101603746 1.0207787292669093 0.9218349488643668 1.0 18.93036381520655 2.9034047498455133 3.469511136842351 0.9899797239039408 1.173239893676861 0.6849955709745918 0.058788795472972416 0.14337438050557255 3.2338278277364294 0.018734226426503683 0.020400767366087296 800.5800247699464 -2.9034047498455133 0.18326016977292026 DWEAYWR ddPTM_BT-474_Trastuzumab_2h_R1 3 DWEAYWR 7 0 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 ;; 119.89 0.01089 413530000.0 942110.0 1004850.0 923320.0 860110.0 843340.0 1046720.0 966860.0 885200.0 1197030.0 1034710.0 False True 937037.7844382619 1038295.8248053476 1053315.4303586902 968999.8378109352 950734.3501321989 974362.710113847 920089.2880361214 951258.1189545213 902037.9958802211 968673.9219402005 0.9673407771331625 1.0718734150762501 1.0873787417018077 1.0003364557085237 0.981480277932878 1.0058727586701748 0.9498441809946048 0.9820209849865718 0.931209125640018 1.0 19.885651577259885 3.509595067725863 5.004055961564011 0.9753240714313939 1.0455597416030167 0.4113900247931952 0.03579242991165569 0.17782525500180052 11.41193778012097 0.009585898431127015 0.014476058596693576 3232.920817252469 -3.509595067725863 0.0702356701716228 DWEDDS(ph)DEDMSNFDR ddPTM_BT-474_Trastuzumab_2h_R1 36 DWEDDSDEDMSNFDR 15 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6;Q15185-2 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 1 DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR 543.23 0.0 344801519000.0 30338663.1 27627057.0 19829302.0 23576131.0 24907517.0 29860893.0 29078379.0 26463857.0 35175414.0 28547241.0 True False 30175323.10881194 28546606.891336363 22621095.362217285 26560866.76728482 28079341.651530404 27796679.751891244 27671746.717574943 28438724.390082955 26506904.54609911 26725331.63885733 1.1290906888107046 1.0681479009162598 0.8464289860982422 0.9938461054929105 1.0506639180748054 1.0400873645839523 1.0354126598504607 1.0641111876319782 0.9918269641810306 1.0 24.67170451489879 3.244978378637919 24.71971120653631 1.0363541186177285 1.0019369919498253 0.012427500646941314 0.07006745994815146 485.34225724547144 1869410.9587017703 0.020488915822389746 0.02706135796753492 1757.8360978643475 -3.244978378637919 -0.0344171266679032 DWEDDSDEDMSNFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 DWEDDSDEDMSNFDR 15 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6;Q15185-2 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 ;;; 471.09 1.0202999999999991e-198 3562160000.0 2335110.0 2223590.0 2015810.0 1979200.0 2347120.0 2341620.0 2405150.0 2276170.0 3007200.0 2458250.0 False True 2322538.027215111 2297600.8489614576 2299618.526265384 2229766.5170680513 2646011.819529825 2179749.320980571 2288803.705934756 2446029.3635570663 2266115.8544155103 2301362.3803862915 1.0092013526462813 0.9983655197213215 0.999242251400401 0.96888979157371 1.1497588741698657 0.9471560583234583 0.9945429391917723 1.0628614530261384 0.9846844954661748 1.0 21.134056742465827 DWEQFHQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DWEQFHQPR 9 0 Q9H773 Q9H773 DCTPP1 dCTP pyrophosphatase 1 0 ;; 149.27 8.802799999999999e-05 1679410000.0 1068870.0 1472480.0 1378810.0 1380530.0 1435890.0 1278700.0 1381160.0 1100610.0 1237840.0 1323590.0 False True 1063115.3226826207 1521490.6066670436 1572934.463168636 1555304.956451069 1618742.0803131857 1190306.4787360278 1314348.0142564257 1182743.106984337 932790.9182062036 1239117.3530175895 0.8579617742368342 1.2278825754169271 1.269399108436429 1.2551716370233024 1.3063670493929458 0.9606083522576019 1.0607131044171312 0.9545045141237303 0.7527865830743171 1.0 20.2408813965114 2.231934948639446 1.4124913816675397 0.903036111175494 1.1875654324775822 0.39442905269288564 0.14145483089617664 0.4200645905816741 1.6371305297136323 0.0846621727304391 0.04938867819626473 170.58268603841876 -2.231934948639446 0.2845293213020882 DWGEHNQR ddPTM_BT-474_Trastuzumab_2h_R1 3 DWGEHNQR 8 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 ;; 171.73 0.00028767 929750000.0 287864.0 339830.0 249991.0 292355.0 283984.0 270114.0 254585.0 257931.0 324604.0 277558.0 False True 286314.17220869736 351141.0361184271 285187.559839275 329367.11302416655 320147.6790949582 251441.65495996174 242269.75094085568 277179.12096707925 244609.69367075415 259844.01081064082 1.1018694304920749 1.3513532023423016 1.0975337047391218 1.2675570700922951 1.232076421912465 0.9676638463805032 0.9323661152898681 1.0667135259433447 0.9413712977552962 1.0 17.98728628089937 2.739088617369543 24.99974597667914 0.9883154022858743 1.21486742125058 0.6834382190755339 0.07764008192373284 26.622905473573745 1260568.0275480417 0.02286568496146528 0.022931861735364874 548.3888517207679 -2.739088617369543 0.22655201896470556 DWGSGSDTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DWGSGSDTLR 10 0 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 Q93084-4 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 0 ;;; 172.94 8.2905e-06 598244000.0 505245.0 716870.0 747060.0 618450.0 778980.0 895430.0 683900.0 523890.0 633870.0 699300.0 False True 502524.817057997 740730.5845929333 852239.5544380742 696745.7065888926 878178.4856238037 833531.031715494 650817.1442482913 562985.3320595165 477661.23192283814 654670.0752991495 0.7676001027362825 1.1314563053068505 1.3017848021366274 1.064269977928221 1.3414061811554816 1.2732077777262303 0.994114698080407 0.8599527507076935 0.7296213007820348 1.0 19.32040850987127 1.9723611150980698 3.5783868809831447 0.8551205061878508 1.1578619080591552 0.3747277342054042 0.16377575693894866 0.23967957400689954 6.1667811844700715 0.07798999979982729 0.046259487833582046 93.83419122861292 -1.9723611150980698 0.3027414018713044 DWHRPCLK ddPTM_BT-474_Trastuzumab_2h_R1 6 DWHRPCLK 8 1 P50238 P50238 CRIP1 Cysteine-rich protein 1 0 ;;;;; 143.45 0.00036124 44329280000.0 10815710.0 10871890.0 10346680.0 9631910.0 9481570.0 11672830.0 11257750.0 4023500.0 13103610.0 9649960.0 False True 10757479.419098336 11233754.286453724 11803402.60904524 10851308.818418022 10688991.737831661 10865914.736986205 10713169.623718677 4323754.000919019 9874400.894878166 9034091.291053584 1.190764967114226 1.243484698630227 1.3065401077731074 1.2011511140211766 1.183183941080706 1.2027678697188577 1.1858602352544163 0.4786041962184743 1.0930153987547964 1.0 23.10694806185595 1.891660671624467 9.783547858566614 0.8052046108367711 1.2209995013814767 0.5251829650273903 0.15439189816937976 0.24999409444470785 21.04233427894875 0.06084545724585014 0.038612068300717686 77.9221041918819 -1.891660671624467 0.41579489054470564 DWHRPCLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DWHRPCLR 8 1 P52943;H0YFA4;H0YHD8;P52943-2 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 0 ; 115.49 0.0022371 781450000.0 139583.0 213425.0 193214.0 174514.0 172669.0 156649.0 175259.0 88652.0 184415.0 162273.0 False True 138831.50063712933 220528.72210686305 220416.8517538059 196607.45450667632 194657.37366065476 145820.22334208168 166781.05261560358 95267.66240573452 138968.39428439617 151916.59821109512 0.9138665706838469 1.4516433668454596 1.4509069736246103 1.2941802069151207 1.2813436843166364 0.9598702515669667 1.09784615097722 0.6271050268868956 0.9147676812200151 1.0 17.212919979883285 2.502321096472542 1.5223414661866024 0.8353926856752883 1.306806009964295 0.48673791841419656 0.1811857117901701 0.2876677085486996 1.3504488742665937 0.08388462423721484 0.06540814211002731 317.92237672116005 -2.502321096472542 0.47141332428900673 DWILPSDYDHAEAEAR ddPTM_BT-474_Trastuzumab_2h_R1 8 DWILPSDYDHAEAEAR 16 0 O43852;O43852-3;O43852-15;O43852-5;H0Y875;O43852-9;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;;;;; 316.39 7.5999e-58 9137270000.0 4112980.0 5112430.0 4685230.0 4327650.0 4405750.0 4879470.0 4825860.0 4524450.0 4957830.0 4391310.0 False True 4090836.1726750354 5282594.1420208085 5344869.659250803 4875530.0462760525 4966796.147573855 4542163.723936881 4592414.71522453 4862087.433691581 3736039.228018369 4111052.836210361 0.9950823634867311 1.2849735463118965 1.3001218598245494 1.1859565518915587 1.2081567290563777 1.1048662970053007 1.1170896843685172 1.1826866808585064 0.9087791806301166 1.0 21.971076483198495 1.2448868433714446 24.999999826706276 0.9543895592324826 1.1772044177774876 0.5062482197289622 0.08600188888141803 104.79329460521474 414134.9952372599 0.060578394045320026 0.020909089933438686 17.574656417640615 -1.2448868433714446 0.22281485854500505 DWNEELQTTR ddPTM_BT-474_Trastuzumab_2h_R1 4 DWNEELQTTR 10 0 K7EIG1;A0A494C0R8;O75153;I3L2B0 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ;;; 183.13 3.9605000000000005e-06 1070190000.0 718690.0 821450.0 733600.0 704390.0 722950.0 831670.0 767730.0 728330.0 908090.0 755180.0 False True 714820.6528939652 848791.4666729894 836884.5034344923 793565.7017772667 815013.3972396336 774178.6104405969 730591.9668865927 782681.6829848025 684303.3872825823 706983.7658578744 1.0110849603831868 1.200581268854231 1.183739349967948 1.122466653550851 1.152803553064154 1.0950443953987916 1.0333928474299143 1.1070716482931884 0.967919519979683 1.0 19.431317561911037 1.7840270121214359 0.7889519521266161 0.9931846408738857 1.1410463407208176 0.4481356343282019 0.05691566479918042 0.5511097168603796 0.6578118722273473 0.049531339869637175 0.02298996646974737 60.817282705836845 -1.7840270121214359 0.14786169984693187 DWPDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 DWPDAR 6 0 P12532;P12532-2;F8WCN3;P17540;H0YJJ7;P12277;H0YJG0;G3V4N7;P06732 P12532;P12277 CKMT1A;CKMT1B;CKMT2;CKB;CKM Creatine kinase U-type, mitochondrial;Creatine kinase S-type, mitochondrial;Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed 0 101.21 0.08557000000000001 568240000.0 1061800.0 1228400.0 1151700.0 1010400.0 1158500.0 1537400.0 1235500.0 1065800.0 1466400.0 1099600.0 False True 1056083.3867770697 1269286.5514165196 1313849.3492441452 1138316.5364013552 1306028.1080325262 1431123.1566503248 1175734.1449316626 1145335.408022739 1105025.3687532945 1029422.5865850778 1.025898790777881 1.233008259151518 1.2762973790992884 1.1057815820590389 1.2686996817944678 1.3902193086687709 1.1421297339433232 1.1125998428130286 1.0734419306059868 1.0 19.973403911534202 1.6007409076141437 1.9385942323959353 1.037225390287582 1.2175524213471047 0.3498571110531633 0.09546374144843182 0.349810161116745 2.74735205257379 0.07586005578140172 0.027346098171193448 39.87869221763849 -1.6007409076141437 0.18032703105952264 DWPELQDDIPHILAQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DWPELQDDIPHILAQAR 17 0 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 ; 237.46 3.223e-20 358270000.0 267030.0 297480.0 249440.0 287280.0 273550.0 294560.0 306150.0 254270.0 326430.0 303440.0 False True 265592.3401498218 307381.44196954224 284558.98382865323 323649.6185445176 308384.9710421216 274197.7605196563 291340.3548934266 273244.9185568981 245985.70043790055 284074.19941194594 0.9349400286953797 1.082046319608905 1.0017065415222883 1.1393136695078103 1.0855789497268695 0.9652328901648421 1.0255783717652716 0.9618786891683044 0.8659205973196745 1.0 18.115908281428123 1.9340443139134023 1.4159684275845725 0.9337313082001348 1.046624105989468 0.2986410020877429 0.06411231162920841 0.48066983825409276 1.7917607898593775 0.04518725618240398 0.020303658585131293 85.91011767589858 -1.9340443139134023 0.11289279778933325 DWQSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 DWQSGR 6 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 ; 202.71 0.00037399 2416400000.0 763800.0 799340.0 796940.0 771770.0 672510.0 771960.0 831610.0 787550.0 922580.0 838180.0 False True 759687.7856661585 825945.5486887661 909142.2248733432 869476.0028686391 758150.1622209366 718596.2221983772 791381.8472412942 846320.9800978688 695222.5209386339 784686.6347979982 0.9681416147246154 1.052580115502272 1.158605466891103 1.1080550684955506 0.9661820765127561 0.9157747696102475 1.0085323390846583 1.0785464446144633 0.8859874631579585 1.0 19.58175710209429 3.234071496115449 24.99857277412028 0.9859094785623573 1.076666601967877 0.3242494399804051 0.06681426193049005 152.22955403669323 847722.3440213338 0.02051945122368744 0.025332343118397004 1714.2394924818168 -3.234071496115449 0.09075712340551967 DWQSYYYHHPQDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DWQSYYYHHPQDR 13 0 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;;;; 180.95 7.209400000000002e-06 15189630000.0 2109820.0 2925590.0 2834900.0 2873130.0 2862950.0 2983280.0 2868890.0 1731740.0 3169480.0 2632720.0 False True 2098460.9635430397 3022966.494593497 3234029.2786074695 3236867.9634113414 3227529.7124658823 2777052.875485742 2730110.8304759166 1860971.2323975407 2388404.1228561047 2464697.555615008 0.8514070859373323 1.226506062663411 1.3121404170827333 1.3132921546650604 1.309503352698594 1.1267317035143458 1.1076859407176558 0.7550505449067882 0.9690455193639912 1.0 21.23297919289096 1.9514308076187954 4.292029336506893 0.8866734741883118 1.2037183848027508 0.4328781672391514 0.1426916662812857 0.1848002283420066 6.997099609129881 0.0666758693280712 0.03986416102974437 89.41920567015686 -1.9514308076187954 0.31704491061443907 DWSHYFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DWSHYFK 7 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ; 125.25 0.0040673 3034200000.0 8684900.0 9922500.0 9060900.0 8345300.0 6238700.0 7045000.0 8250300.0 6855600.0 8608300.0 7821900.0 False True 8638141.463383095 10252764.414222086 10336595.961245354 9401814.124337114 7033161.465328036 6557995.732146179 7851201.469793358 7367199.684031418 6486899.810310262 7322699.645334498 1.1796389148483923 1.4001345010449002 1.411582676046408 1.283927319117517 0.9604601862660125 0.8955707662165915 1.072173085071922 1.0060769990375438 0.8858617892983296 1.0 22.80394419145512 3.2840354005731642 4.918712774268007 0.9756043020037811 1.3374450222728398 0.8278447898779351 0.07797098944689022 0.07612093793836103 4.058909736822746 0.0222624523868291 0.02976040066380081 1923.2484919522894 -3.2840354005731642 0.36184072026905867 DWSNDVR ddPTM_BT-474_Trastuzumab_2h_R1 4 DWSNDVR 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 125.5 0.0094053 3439200000.0 7860600.0 9398400.0 8902900.0 9126000.0 8634700.0 9873200.0 9038100.0 8598100.0 10964400.0 9673900.0 False True 7818279.402994766 9711220.062547216 10156350.934605962 10281350.664290143 9734277.863123406 9190688.923012862 8600892.574105104 9239733.88226714 8262370.535432759 9056503.419757517 0.8632779165012556 1.0722924303613004 1.1214428421071465 1.1352450485317016 1.0748384240530697 1.0148164801619362 0.9496924116808194 1.0202319210866624 0.9123135223918437 1.0 23.110522724159335 2.5165894945030898 4.113914563645638 0.9766679043393215 1.0622064800364241 0.20725183047444506 0.07487192921178089 0.34960638742714545 12.843483435592194 0.026296711277241386 0.0236452871381558 328.5409393350446 -2.5165894945030898 0.08553857569710266 DWTDYDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DWTDYDEK 8 0 Q9NWV4 Q9NWV4 C1orf123 UPF0587 protein C1orf123 0 135.83 0.0019006 337900000.0 573660.0 505070.0 456810.0 384100.0 426610.0 573510.0 508280.0 538680.0 729300.0 559260.0 False True 570571.478299618 521880.9496287381 521124.8773363014 432727.0206173396 480936.2547844243 533864.603597325 483692.5545818413 578879.0369616151 549573.7871193248 523567.54799342516 1.0897762485210085 0.9967786422761477 0.9953345644387523 0.8264970246451823 0.9185753712727509 1.019667100536241 0.9238398300956486 1.105643463159952 1.049671220505489 1.0 18.99801615269804 1.7410228295158299 24.99999999998643 1.0586412888433578 0.9641637595118593 0.23108239723560353 0.07019928084029961 0.554807168818406 5668.46227461117 0.03373156636121129 0.018705934945775497 55.083665142108956 -1.7410228295158299 -0.09447752933149856 DWTISR ddPTM_BT-474_Trastuzumab_2h_R1 5 DWTISR 6 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;;; 159.19 0.021386 1705450000.0 1004093.0 1177095.0 1097214.0 1086127.0 1026546.0 1090944.0 1045139.0 999769.0 1360335.0 1107574.0 False True 998687.0748532208 1216273.895506045 1251692.1940449474 1223630.566836891 1157270.54828516 1015529.6090859455 994581.6337513018 1074376.8395041164 1025098.6668051088 1036887.6790781923 0.9631583970031041 1.1730044825948067 1.2071627615034632 1.180099437505821 1.116100202207041 0.9794017515848636 0.9591990085517255 1.0361554690853811 0.9886303863851829 1.0 19.98382819190991 2.8052648548726475 4.8291798944608555 0.995484579990315 1.139733987837878 0.5191566222213845 0.06478812030603583 0.17500593274434276 8.065989476101961 0.020507826831609302 0.021618247760079666 638.6528504552751 -2.8052648548726475 0.14424940784756302 DWVLNEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 DWVLNEFK 8 0 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 105.52 0.010171 27886000.0 85468.0 95275.0 97940.0 76245.0 52754.0 75616.0 90405.0 70080.0 162750.0 95312.0 False True 85007.84978438746 98446.17078004629 111729.10069025919 85897.60918242396 59471.90920254464 70388.84390091777 86031.7647693622 75309.72545902942 122642.44323826951 89229.10655929142 0.9526919304958075 1.1032966099983335 1.2521598052314562 0.9626635578307204 0.6665079534672516 0.7888551910373037 0.9641670536305926 0.8440040292120062 1.3744667851938583 1.0 16.44522677399009 3.495364372580039 24.352644152970758 0.9120121123301003 1.103547123856298 0.12406385408883291 0.1868781502930496 938.4188527290293 1252687.8954616773 0.05013229093698143 0.07599467016945452 3128.7032447451866 -3.495364372580039 0.19153501152619767 DWVLNEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 DWVLNEFR 8 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;A0A0U1RQJ0 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;; 184.38 0.00050796 1724060000.0 1529136.0 1867989.0 2066385.0 1587052.0 937112.0 1262952.0 1728358.0 1168323.0 2643350.0 1469523.0 False True 1520903.3016789798 1930163.8846418052 2357314.0466595986 1787972.620475893 1056447.65850201 1175647.100909224 1644750.7205712663 1255509.1948839845 1991931.8115752977 1375736.784018064 1.1055191075410031 1.403003762830595 1.7134920531634532 1.299647317166171 0.7679140884904466 0.8545581644444765 1.1955417196649372 0.9126085814301373 1.4479018331962714 1.0 20.391773038843215 3.447763812337513 11.983140091013944 1.0220775020492625 1.423507355189073 0.3760597853939428 0.22409325744796027 0.7680830191786241 311.3986166269128 0.061678877546524756 0.08366550768722988 2803.9083395743287 -3.447763812337513 0.4014298531398104 DWYDVK ddPTM_BT-474_Trastuzumab_2h_R1 5 DWYDVK 6 0 P61247;E9PFI5;D6RG13;H0Y8L7;H0Y9Y4;D6RI02 P61247 RPS3A 40S ribosomal protein S3a 0 ;;;; 151.14 0.024247 7244700000.0 11053900.0 9659700.0 9408130.0 8486000.0 8390670.0 11276500.0 11758500.0 10533050.0 14157400.0 10837600.0 False True 10994387.030603739 9981217.275088042 10732712.927068088 9560326.729910824 9459172.089102529 10496982.09702575 11189696.43316791 11319079.676744139 10668498.469440721 10145935.089463826 1.0836248146334977 0.983765142106336 1.0578337858886568 0.9422814797858174 0.9323115125115994 1.0345997687218078 1.102874829623934 1.115627054276996 1.051504703644276 1.0 23.27439849990872 2.454473153517982 6.4445807109080215 1.0810488540959664 0.9975120968904427 0.25313800459629077 0.052603434896992596 0.18517576567121183 27.819985877979857 0.018330955546581724 0.015571218239926432 284.75617689739585 -2.454473153517982 -0.08353675720552367 DWYPHSR ddPTM_BT-474_Trastuzumab_2h_R1 12 DWYPHSR 7 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ;;;;;;;;;;; 159.04 0.0013983 64147927000.0 9116684.0 11391626.0 9139260.0 8990756.0 8522045.0 9355239.0 11354226.0 8858013.0 10758498.0 9767039.0 False True 9067600.786302818 11770789.385026671 10425988.368128026 10128984.787757028 9607276.916631898 8708533.34779383 10804978.711024577 9519042.910138601 8107210.3243873175 9143698.209037205 0.9916776099785122 1.287311667110029 1.1402375854688056 1.1077558069169444 1.0506992572366958 0.952408221346011 1.1816858413311848 1.0410495504685864 0.8866445653657432 1.0 23.12434635700709 3.361580819713887 2.50181593853956 1.0289890738375156 1.1525734932367397 0.24406503451029626 0.09735558332142001 0.41049032275204145 5.214367105361822 0.028530740249151778 0.04138431668976195 2299.221541404899 -3.361580819713887 0.12358441939922415 DYAAYNVLDDPELR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYAAYNVLDDPELR 14 0 Q86SX6 Q86SX6 GLRX5 Glutaredoxin-related protein 5, mitochondrial 0 ;;; 189.3 1.709e-06 197319000.0 213851.0 261837.0 260364.0 243685.0 279835.0 441708.0 247301.0 201486.0 304107.0 303295.0 False True 212699.64997707956 270552.08626119123 297020.98807554244 274535.49601441383 315470.3285380076 411173.7656287896 235338.10584843805 216521.90844517713 229163.9046750259 283938.4534360866 0.7491047704285584 0.9528546872996595 1.0460752479318574 0.966883818278635 1.1110517956280224 1.4481087737605192 0.8288349217955141 0.7625663443078355 0.8070900644199281 1.0 18.11521871914834 2.058961064164612 24.999998164471652 0.8215387497280542 1.0490020611922448 0.22627996140316486 0.17452963862318863 101.11391309152789 42872.454551010036 0.0677550839098935 0.050040439311313294 114.54102472923509 -2.058961064164612 0.22746331146419063 DYAFIHFDER ddPTM_BT-474_Trastuzumab_2h_R1 8 DYAFIHFDER 10 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;;;; 196.76 3.2746000000000005e-07 20168160000.0 10115010.0 12191860.0 11156530.0 10740370.0 10323880.0 11506830.0 11195370.0 9902950.0 12898590.0 10895960.0 False True 10060551.910043271 12597658.689965012 12727272.44970285 12100099.740765044 11638564.923569132 10711389.926264253 10653807.182633415 10641958.415161174 9719905.326750927 10200570.504299324 0.9862734545879529 1.2349955019334817 1.2477020225818325 1.1862179410127216 1.1409719602118062 1.050077534560408 1.0444324832756229 1.043270904374987 0.9528785985699715 1.0 23.28214650667366 2.686237973980733 1.815362372131297 1.015351837239679 1.1754519900974567 0.502412789724666 0.07097851544071318 0.2941730856186095 1.9270433845697996 0.027750100864877714 0.026150992708023013 485.55448945596726 -2.686237973980733 0.16010015285777768 DYAFVHFEDR ddPTM_BT-474_Trastuzumab_2h_R1 6 DYAFVHFEDR 10 0 O43390;O43390-3;B4DT28;A0A286YEZ8;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;;;; 192.5 6.761399999999999e-07 10998310000.0 5328210.0 6746650.0 6524950.0 6284930.0 5783080.0 6476930.0 6410640.0 5545650.0 7507010.0 6376240.0 False True 5299523.509379783 6971208.166813947 7443606.244117901 7080601.493591615 6519520.95899935 6029195.07415324 6100532.852177028 5959494.563240105 5657007.9742803145 5969302.904226295 0.8877960449331018 1.1678429254910652 1.246980822308044 1.1861689056821887 1.0921745911710223 1.0100333608275334 1.0219841328302877 0.9983568699488771 0.9476831826167049 1.0 22.509131032583745 2.8075939173900277 2.9676715317340174 0.9959949999182113 1.1347440596131508 0.3105778232892389 0.08980795013950628 0.3194125612220857 5.538433672793949 0.030342439623438303 0.03164377966983921 642.0870596085196 -2.8075939173900277 0.13874905969493956 DYAFVHMEK ddPTM_BT-474_Trastuzumab_2h_R1 7 DYAFVHMEK 9 0 Q96PK6;Q96PK6-2 Q96PK6 RBM14 RNA-binding protein 14 0 ;;;;;; 151.22 8.3386e-05 5523140000.0 6827080.0 6855790.0 6357310.0 5961070.0 5848820.0 7345970.0 7352810.0 6658340.0 9232230.0 7053270.0 False True 6790323.759839902 7083980.825737432 7252363.989270906 6715740.850797717 6593632.558327842 6838160.384453344 6997126.489838096 7155219.141165444 6957070.622043927 6603124.269991741 1.0283501388424414 1.072822581566573 1.0983231108082685 1.0170550448850053 0.9985625423245426 1.0355946828881804 1.0596690602412135 1.0836111586878243 1.0536028609457972 1.0 22.654717366874642 -0.28331035555964956 7.369758744523648 1.0000001481282652 1.051768416476642 0.20407301052244053 0.029216864340749795 0.0 0.0 0.030784631040506143 0.00725600712168926 0.5208223879468852 0.28331035555964956 0.05176826834837689 DYAFVHMER ddPTM_BT-474_Trastuzumab_2h_R1 8 DYAFVHMER 9 0 Q9BWF3;E9PB51;Q9BQ04;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;E9PLB0;E9PM61;U3KQD5 Q9BWF3 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B 0 ;;;;;;; 160.75 6.505399999999999e-05 5029950000.0 3893503.0 4574120.0 4132685.0 4183414.0 4106830.0 4334876.0 4402276.0 3777503.0 4900890.0 4235306.0 False True 3872540.812456852 4726366.819086073 4714531.12605803 4713033.783464899 4629810.4574115025 4035216.2253205 4189321.0915525495 4059399.455631568 3693131.3280614666 3965005.1450521103 0.9766798959364167 1.1920203495786275 1.189035311074248 1.188657671566012 1.1676682092554145 1.0177076895741246 1.0565739357943484 1.0238068570219263 0.9314316609828585 1.0 21.91889130731808 2.7326429602001494 23.40184302242336 1.0129410080094392 1.1506609840210587 0.5125219661233948 0.0663637430802587 164.80555754567862 651734.2549181216 0.021182774094449467 0.02049114210062049 540.309943654896 -2.7326429602001494 0.13771997601161945 DYALHVGDGS(ph)SDPEVLLNIENQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYALHVGDGSSDPEVLLNIENQR 23 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 DYALHVGDGS(0.722)S(0.278)DPEVLLNIENQR 105.32 1.1932e-05 0.0 18163.0 17087.0 18724.0 15654.0 19892.0 20399.0 21004.0 16048.0 22327.0 19624.0 True False 18065.212426099002 17655.730465690387 21360.176448074464 17635.794794959213 22425.128290878754 18988.865144080894 19987.956276928086 17245.583250092826 16824.81001647216 18371.579519048322 0.9833238566868098 0.9610349751029454 1.1626750125609753 0.9599498386447273 1.2206423659777084 1.033600030111322 1.087982459875257 0.9387098824144096 0.9158063953634246 1.0 14.165188048804124 1.7017777422388307 6.667444788780197 0.9458914908733179 1.0601138681479225 0.26043005558037624 0.08217511471719391 0.16581270195321363 16.65517114499105 0.03990232008924806 0.020526264613295337 50.32429995102234 -1.7017777422388307 0.1142223772746046 DYALHVGDGSS(ph)DPEVLLNIENQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYALHVGDGSSDPEVLLNIENQR 23 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 DYALHVGDGS(0.14)S(0.86)DPEVLLNIENQR 186.28 1.792e-17 47271000.0 30672.0 37682.0 28680.0 29191.0 33225.0 39780.0 41904.0 34397.0 41811.0 40906.0 True False 30506.865359979576 38936.222590749974 32717.894708971162 32886.57760697932 37456.006809996295 37030.102232047524 39876.94343117476 36963.87880442688 31507.23928869611 38295.34405861146 0.7966207409780278 1.0167351553535502 0.8543569855096759 0.8587617741897302 0.9780825249322594 0.9669609489699983 1.041300043424147 0.965231667532566 0.8227433402993827 1.0 15.224881379744916 3.2298028421412837 24.988673902354254 0.9665884519943196 0.8893225781326948 0.21931723142336612 0.07382941155620333 300.42295780841516 857200.249231923 0.020932198206555883 0.02537653838209429 1697.4728710968045 -3.2298028421412837 -0.07726587386162487 DYALHWLVLGTHTSDEQNHLVVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYALHWLVLGTHTSDEQNHLVVAR 24 0 Q16576;E9PC52;Q16576-2;C9J7L0 Q16576 RBBP7 Histone-binding protein RBBP7 0 ; 344.01 2.2369999999999995e-88 1095340000.0 576920.0 904110.0 1047090.0 1157020.0 1080260.0 1167940.0 1138340.0 643880.0 1030950.0 999700.0 False True 573813.9268218381 934202.7548039635 1194511.1705305662 1303498.6133680665 1217824.7077973404 1087203.0568350332 1083274.1453189065 691929.5951563909 776886.1865222368 935898.2901137695 0.6131156909711677 0.9981883337882796 1.27632583919494 1.3927780690886944 1.3012361713464604 1.1616679593493764 1.1574699481363746 0.7393213583842307 0.8300968115112136 1.0 19.835992226124166 1.7557723145505761 15.133434671897273 0.8392312214756291 1.1474094368862389 0.25516168808758166 0.21081891282303394 0.4955887454586564 437.699340346118 0.10428561032564727 0.05759190150433069 56.9865433381382 -1.7557723145505761 0.30817821541060975 DYAPPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYAPPPR 7 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;; 143.37 0.005645000000000001 1197180000.0 1218200.0 1429610.0 1398190.0 1410010.0 1446640.0 1479530.0 1472830.0 1278420.0 1681670.0 1450260.0 False True 1211641.3465547431 1477193.704632506 1595042.9987146568 1588517.1214284196 1630861.029092943 1377253.5735389984 1401583.5861430191 1373822.1920852223 1267244.9617235058 1357703.1651699455 0.8924199174295071 1.0880093252545402 1.174809810887495 1.1700032541572392 1.2011911520356557 1.0143996190556173 1.0323195983472433 1.0118722761563712 0.9333740940088942 1.0 20.37273666676603 2.5746356653700997 8.909409157779063 1.0015330990451943 1.1117549465230174 0.2898693903023346 0.08351362286795515 0.48522344963916325 40.84682748960875 0.028344951429411094 0.026695316087009962 375.5222421875275 -2.5746356653700997 0.11022184747782315 DYASHLS(ph)PGSIIQPQR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYASHLSPGSIIQPQR 16 0 C9J0Q5;C9JE98;C9J330;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 DYASHLS(1)PGSIIQPQR;DYASHLS(1)PGSIIQPQR 206.21 1.3274e-11 389290000.0 169747.0 158413.0 161024.0 176150.0 166869.0 193700.0 182236.0 162353.0 178649.0 196064.0 True False 168833.10101266482 163685.68094231928 183694.77955430152 198450.5719389334 188118.77803994782 180309.97492075458 173420.54847087554 174468.60527182923 134623.34772395462 183551.0276611646 0.9198156129331561 0.891772075743881 1.0007831712792274 1.0811738537649234 1.024885452492346 0.9823424974422207 0.9448083766167197 0.950518270014257 0.733438267490768 1.0 17.485821666223853 -0.571440755529324 5.287717618583694 0.9999999981588753 0.9545299452967132 0.02550804195880707 0.08833869113112576 1.9390853363508866e-09 3.667150009814573e-10 0.08675320682893019 0.020447926336742854 0.2682620533496029 0.571440755529324 -0.0454700528621621 DYAVSTVPVADGLHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYAVSTVPVADGLHLK 16 0 O94760;B4DYP1;O94760-2 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 0 ; 195.2 1.4611e-12 362970000.0 444840.0 476640.0 410940.0 394100.0 374940.0 515400.0 494480.0 439250.0 618690.0 479290.0 False True 442445.03086636984 492504.67426503514 468796.7800454881 443993.0195920162 422686.3865565091 479771.61112109857 470560.11330296134 472029.0654663058 466222.13952125923 448701.3018591867 0.9860569359462652 1.0976225658903815 1.0447858700276467 0.9895068673800103 0.9420217521213218 1.069244972397389 1.0487157299370495 1.0519895162114772 1.0390478868447122 1.0 18.775395844283626 DYDDMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 18 DYDDMSPR 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR 179.31 0.00025702 85933142000.0 40447740.0 42283640.0 35458490.0 36438210.0 37159780.0 42145710.0 41983460.0 39071400.0 51432580.0 42840780.0 True False 40229973.86200642 43691025.39639982 40450737.18127987 41051283.649906166 41891857.71972802 39232276.26802988 39952559.647408046 41987106.268549144 38757709.82026277 40106644.742562935 1.0030750295926052 1.0893712420184822 1.0085794371712118 1.0235531771208162 1.0445116510898391 0.9781989124209851 0.996158115540606 1.0468865330933699 0.9663662983787666 1.0 25.257337941863867 2.759152981477353 24.93327045990201 1.0041268356622672 1.0349319714103724 0.2563981255930453 0.02983494816153656 1300.227511826929 1574315.0426647603 0.009069438091481011 0.009602431190477984 574.318732001394 -2.759152981477353 0.030805135748105172 DYDDMSPR ddPTM_BT-474_Trastuzumab_2h_R1 13 DYDDMSPR 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;;;;;;; 195.81 0.00036559 34472800000.0 22528080.0 24815340.0 22774350.0 22699180.0 22204440.0 25026500.0 25205060.0 22733300.0 29551740.0 24774470.0 False True 22406791.320384987 25641303.59071017 25980780.521801133 25572893.860600654 25032043.817973025 23296476.9610442 23985794.955120392 24429774.28335835 22269109.65002826 23193342.114109095 0.9660872163289641 1.1055458702138454 1.1201826969989102 1.1025963284973932 1.079277134568088 1.0044467436571967 1.0341672552887162 1.0533097887818894 0.9601509579976142 1.0 24.467207388638723 2.748562466683006 22.677984901892582 1.0189305332537997 1.0805218281207887 0.3162222063786354 0.04606579639651888 253.60059420171228 575007.7138788971 0.014230319931884125 0.014898771752027444 560.4830285607733 -2.748562466683006 0.061591294866989 DYDEEEQGYDS(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 3 DYDEEEQGYDSEK 13 0 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK 327.1 2.6532999999999995e-62 2684200000.0 2529690.0 1607690.0 1354120.0 1294230.0 1323790.0 1881840.0 1745950.0 1753140.0 2405950.0 1707590.0 True False 2516070.430114981 1661200.9897808738 1544768.3257779637 1458079.3852996097 1492366.8097819425 1751752.8301748722 1661491.7283232997 1883968.209064538 1813035.8605782767 1598610.1442586514 1.5739112122810892 1.0391532893413788 0.9663196066445227 0.9120919134263268 0.9335401849798852 1.095797394046464 1.0393351589131878 1.1785038496288411 1.1341325882922282 1.0 20.60838671857326 4.73854274760212 11.45759509290711 1.0384867233764439 1.5744518707016824 0.8000034910853072 0.08106597338686619 0.031138385060692393 285.3579902336188 0.022510702531843965 0.12974647225323802 54770.000841591456 -4.73854274760212 0.5359651473252385 DYDEEEQGYDS(ph)EKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYDEEEQGYDSEKEK 15 1 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 DYDEEEQGYDS(1)EKEK 222.79 8.2014e-13 3689400000.0 677990.0 396120.0 287740.0 294340.0 346760.0 526160.0 436950.0 425660.0 812890.0 522590.0 True False 674339.7771717696 409304.61474040366 328251.29091908474 331603.4138206398 390917.8305924545 489787.7976474141 415813.0591889032 457424.9106576835 612564.1516679376 489237.8587881919 1.3783474951060866 0.8366168058911522 0.6709441737238822 0.677795897974859 0.7990343011489969 1.0011240725739916 0.8499200372981011 0.9349744759955682 1.2520783922675494 1.0 18.900176522972266 1.4063527449075028 5.531991008990037 1.1240547877279496 0.8726044574889475 0.18109587592109888 0.1975820972350537 0.3238228394849494 15.772527724035168 0.136194243933212 0.05000391252805257 25.48899692520646 -1.4063527449075028 -0.2514503302390021 DYDEEEQGYDS(ph)EKEKK ddPTM_BT-474_Trastuzumab_2h_R1 3 DYDEEEQGYDSEKEKK 16 2 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK 200.29 2.83e-11 4532500000.0 3488390.0 1558130.0 1235510.0 1210990.0 1346460.0 2546210.0 2348790.0 2534100.0 5132300.0 2203880.0 True False 3469608.8958365675 1609991.4151405266 1409459.0687545661 1364301.2098343996 1517923.6999063238 2370196.495833632 2235170.054450865 2723207.409899067 3867513.4342965917 2063226.4915634037 1.6816422772894322 0.7803270371545881 0.6831334681470441 0.6612464581145449 0.7357038629123658 1.1487815349044024 1.0833372213814352 1.3198780749638228 1.8744977587826506 1.0 20.976470771702065 1.9628381211116652 1.6332006698291697 1.44877781518151 0.8934363211352131 0.251052082994068 0.3461935132532331 0.47014676669989813 2.334773611665398 0.22573278109581976 0.10702751245718985 91.79903610558526 -1.9628381211116652 -0.555341494046297 DYDEEEQGYDS(ph)EKEKKEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYDEEEQGYDSEKEKKEEK 19 3 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 DYDEEEQGYDS(1)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK 273.88 1.5460000000000002e-39 779410000.0 1917260.0 1032750.0 638868.0 821770.0 851030.0 1665470.0 1840980.0 1518620.0 5135230.0 1586460.0 True False 1906937.6851876103 1067124.4594394409 728815.0612597967 925805.9977420243 959403.6260499962 1550339.978994675 1751924.7641734448 1631947.1357961085 3869721.3750565858 1485210.7645632592 1.2839508914738873 0.7185003535530119 0.4907149063615304 0.6233499108890896 0.6459713657758993 1.0438518330094164 1.179579899347562 1.0987983488498339 2.6055031833778255 1.0 20.502236246083648 1.4553222033831936 4.480438496991007 1.8313452649669246 0.8439122007247752 0.41410614359120956 0.4370622740399094 0.16477425141321256 6.46701102541803 0.28084347992263875 0.10708937484852175 28.531342247904426 -1.4553222033831936 -0.9874330642421494 DYDHLFK ddPTM_BT-474_Trastuzumab_2h_R1 4 DYDHLFK 7 0 F5H157;Q15286-2;Q15286;F5H7F8 F5H157 RAB35 Ras-related protein Rab-35 0 ;;; 107.32 0.0075045 1419850000.0 3745020.0 4061100.0 4198290.0 3567250.0 4416950.0 5938400.0 4530850.0 3868130.0 6173700.0 4695320.0 False True 3724857.2284308346 4196271.258513212 4789372.7398091545 4018863.484241622 4979422.401186246 5527892.385489973 4311675.475972171 4156789.5025661453 4652274.358341659 4395660.657734305 0.8473941731322753 0.9546394922751236 1.0895683522298523 0.9142797402184138 1.1328040967914106 1.2575794211419553 0.9808936157038513 0.9456575077632852 1.0583788696599759 1.0 22.06764858475132 4.552126587111373 2.8753725303078554 1.0426564949604427 0.8438678677407018 0.30587540359860077 0.09431209737998081 0.4120954809261016 5.802005804090099 0.02515669571409909 0.15246632224089493 35655.50460889397 -4.552126587111373 -0.1987886272197409 DYDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 DYDSPER 7 0 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 DYDS(1)PER 137.69 0.002998 172520000.0 308230.0 301270.0 225510.0 247190.0 232230.0 273270.0 244440.0 234390.0 279040.0 260950.0 True False 306570.5239275721 311297.5898284388 257259.8478319418 278484.2286550382 261803.11396494915 254379.48810838663 232615.5033485193 251881.3720083033 210274.3309444349 244295.94758946527 1.2549144877456506 1.274264239337971 1.05306637449534 1.139946165308586 1.0716637608942428 1.0412759221690675 0.9521873188802348 1.0310501442765854 0.8607360581265022 1.0 17.898270406641767 4.48134690916522 0.403390095175399 0.948644030544989 1.4742417216349146 0.7542094607672842 0.05989807033378857 2.112194621877726 0.3175413730268472 0.04729952102757072 0.5289193379324234 30293.32255775146 -4.48134690916522 0.5255976910899256 DYDS(ph)PERER ddPTM_BT-474_Trastuzumab_2h_R1 2 DYDSPERER 9 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 DY(0.001)DS(0.999)PERER;DYDS(1)PERER 84.169 0.0094923 678320000.0 527850.0 522490.0 469430.0 497330.0 502610.0 553520.0 551570.0 514400.0 655110.0 588400.0 True False 525008.114249648 539880.7637981252 535521.663641294 560291.9270076065 566614.4042971325 515256.4652459269 524888.4518979824 552787.1400702733 493666.91852425726 550847.8082454163 0.953091046911716 0.9800906089066166 0.972177170581944 1.0171446969940245 1.0286224176908985 0.9353880646038034 0.952873813857732 1.0035206309180649 0.896194758578973 1.0 19.07129425127608 1.2884291862913229 24.999910162478237 0.9480936140063899 0.9811481086154116 0.11175738380731415 0.036331940412250026 198.2597553770747 99390.39634953247 0.023689499352976158 0.00865070970742534 19.428048827469727 -1.2884291862913229 0.033054494609021656 DYDSTCVFCR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYDSTCVFCR 10 0 Q9NQE9 Q9NQE9 HINT3 Histidine triad nucleotide-binding protein 3 0 ; 188.98 2.4687e-06 306480000.0 192121.0 235740.0 206528.0 243890.0 216079.0 203889.0 212585.0 208100.0 254830.0 222965.0 False True 191086.64188264965 243586.46339216054 235605.34722644335 274766.44899339514 243595.3798494261 189794.6333330804 202301.45139643663 223629.47871038836 192030.56104705532 208735.18281005966 0.9154500899665321 1.1669640935127554 1.128728487716584 1.3163398967744753 1.1670068101125424 0.9092603881051793 0.9691775419600563 1.0713549852967619 0.9199721793991728 1.0 17.67131426510064 2.7518935540306253 24.569022969354148 0.9856360589220965 1.149750045190328 0.3963513731521422 0.10082391086663525 671.3573880860249 1237129.748122574 0.031625842799680434 0.03336462926468837 564.7985252177916 -2.7518935540306253 0.16411398626823148 DYDVEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYDVEIR 7 0 P50583 P50583 NUDT2 Bis(5-nucleosyl)-tetraphosphatase [asymmetrical] 0 ; 111.01 0.01553 1048550000.0 1959020.0 2373600.0 2112710.0 2229270.0 2087340.0 2312010.0 2344120.0 2082210.0 2617100.0 2280600.0 False True 1948472.853987584 2452603.8411285025 2410161.20399548 2511495.3534278 2353150.376366522 2152186.1905861306 2230725.960191993 2237595.083448143 1972150.7723433194 2135050.155480105 0.9126122161516315 1.1487335952428668 1.128854606908994 1.1763167937678 1.1021522704403979 1.0080260574029336 1.0448119705601828 1.048029282920981 0.9237023155082955 1.0 21.025838530604368 2.7418827728604476 22.546743360576997 1.0144999976261644 1.103328539305647 0.25492890040663974 0.07413096151488001 106.17656007431148 720596.2651360716 0.022951229515277692 0.02340240983442071 551.9284396320845 -2.7418827728604476 0.08882854167948251 DYDVYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYDVYAR 7 0 P49585;C9JEJ2;C9J050;H7C1T3;H7BZN1;Q9Y5K3-2;Q9Y5K3-4;Q9Y5K3-3;Q9Y5K3 P49585 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B 0 ;;; 110.36 0.015867 1675830000.0 2287440.0 3008670.0 2716300.0 2829170.0 2771360.0 2701420.0 2817820.0 2619220.0 2999370.0 2690240.0 False True 2275124.6771984748 3108811.762170579 3098731.429497156 3187342.6319186646 3124276.2688623457 2514677.1938586715 2681511.2814822667 2814679.496529666 2260215.4529988845 2518546.5799696585 0.9033482625625624 1.234367387482677 1.2303649470459612 1.2655484148151286 1.2405076379012154 0.9984636432211496 1.0647058517037915 1.1175808773660143 0.8974284895005252 1.0 21.264159982897123 2.7344209046251255 24.986796374026657 1.0347526390023378 1.186260595565974 0.3316617457186536 0.11075577835127985 447.7276122566363 2702416.0460042725 0.035447954296879886 0.03454001641452014 542.5264353380315 -2.7344209046251255 0.15150795656363614 DYDWINAER ddPTM_BT-474_Trastuzumab_2h_R1 4 DYDWINAER 9 0 O95347-2;O95347;A0A0C4DGE5 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 ;;; 192.32 8.1131e-05 462950000.0 826670.0 913890.0 806110.0 829670.0 803130.0 1007610.0 925590.0 842930.0 1055570.0 1014750.0 False True 822219.3005716717 944308.276191828 919603.2811662742 934706.1369320189 905403.8449755402 937956.2923588096 880815.6756028319 905833.7169118099 795438.9174133344 949987.7862288159 0.8655051280560678 0.9940214915188184 0.968015899253653 0.9839138465585322 0.9530689321488423 0.9873351067830378 0.9271863158361459 0.9535214347415083 0.8373148886166242 1.0 19.857549439606302 -0.5688634534077843 5.704820339631171 0.9999999992716853 0.9464052075076365 0.10396658642101042 0.04972566682938201 3.380722435130814e-10 5.926080977992083e-11 0.04537528774804404 0.010695057728942161 0.2698587762453219 0.5688634534077843 -0.0535947917640488 DYEEIGPSICR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYEEIGPSICR 11 0 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 ; 223.08 1.6762e-11 709470000.0 562590.0 663270.0 588250.0 550390.0 568220.0 658510.0 611840.0 541940.0 833720.0 606980.0 False True 559561.0779496246 685346.5409948177 671070.4868393398 620069.3175672424 640579.448896195 612988.7536658021 582242.9617442233 582382.3147155601 628260.8772756387 568242.016738277 0.9847231663042426 1.2060821284014223 1.1809589348765526 1.0912063861916712 1.1273003931901 1.0787459139054383 1.0246390527161506 1.0248842879631617 1.1056220039515405 1.0 19.116145985124454 2.53008190226049 2.907687206271417 1.0387172409233714 1.1251664619067132 0.26884397725332276 0.06084412388248052 0.33258344763678993 5.600636452414863 0.021472032778044332 0.019022300851831847 338.90806374223325 -2.53008190226049 0.08644922098334185 DYEEVGADSADGEDEGEEY ddPTM_BT-474_Trastuzumab_2h_R1 4 DYEEVGADSADGEDEGEEY 19 0 Q9BQE3;F5H5D3 Q9BQE3 TUBA1C Tubulin alpha-1C chain 0 ;;; 478.65 1.4676999999999986e-239 3796680000.0 3438930.0 3504190.0 3070020.0 3222320.0 3227200.0 3720500.0 3484440.0 3533160.0 4129980.0 3696150.0 False True 3420415.1829810455 3620824.845822409 3502252.130907801 3630265.3816080866 3638164.790886983 3463310.592114951 3315884.325346563 3796822.3402229487 3112201.7678967044 3460258.5425667833 0.9884854385602694 1.04640297864463 1.0121359684036406 1.0491312533297568 1.0514141490098687 1.0008820293370055 0.9582764653437934 1.0972655058909286 0.8994130726393947 1.0 21.722448406071674 1.2292088427047183 24.99999984594816 0.9497065722290858 1.0267268995680314 0.3308877904609515 0.04308348707385104 237.6242887191431 635215.7871073065 0.037199085826492936 0.0097878715598599 16.95152766321219 -1.2292088427047183 0.0770203273389456 DYEEVGVDSVEGEGEEEGEEY ddPTM_BT-474_Trastuzumab_2h_R1 19 DYEEVGVDSVEGEGEEEGEEY 21 0 P68363;P68363-2 P68363 TUBA1B Tubulin alpha-1B chain 0 ;;;;;;;;;;;;;;;;;; 376.88 2.409299999999999e-112 5241146000.0 8191098.0 8127271.0 7412232.0 7402324.0 7860623.0 9002955.0 8618923.0 8211778.0 9949880.0 9219502.0 False True 8146998.038484552 8397782.302195942 8455809.837324508 8339457.459422614 8861626.745487245 8380601.911526488 8201992.7670067465 8824582.57292376 7497865.395561246 8631105.489147231 0.9439113041462189 0.9729671723692093 0.9796902433827115 0.9662096552879194 1.026708195911853 0.9709766520713103 0.9502829941448344 1.0224162575720814 0.8687027872604589 1.0 23.041113923811622 4.7356825054502165 3.7374012829578125 0.9766810658649812 0.9405545561546098 0.03634042970865792 0.0420071663132942 0.8616128943792437 22.97834934119649 0.009466241117419946 0.0858598956915702 54410.47351718574 -4.7356825054502165 -0.036126509710371346 DYEHQFHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYEHQFHLR 9 0 Q15276-2;Q15276;A0A087WZZ3 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 ;;; 197.27 1.6355e-05 743180000.0 702130.0 794110.0 800000.0 750670.0 691330.0 830180.0 831950.0 189585.0 1009980.0 603830.0 False True 698349.8100939757 820541.4713003685 912633.0462753463 845704.7450320714 779366.7776660564 772791.6106335159 791705.4001423692 203732.7953931233 761083.9620386325 565293.0524351286 1.2353766017213104 1.451532913354762 1.6144423540037713 1.4960465928052813 1.3786951286748643 1.3670636978546613 1.4005220774108542 0.3604020861666314 1.346352938108986 1.0 19.108639440528002 1.8689670020046294 10.481970572035074 0.8391750149561245 1.4303067249954085 0.481074145162555 0.2440767680290956 0.28958998176847917 23.057293372198046 0.0968766206176306 0.061664353159371244 73.9549081472296 -1.8689670020046294 0.591131710039284 DYEIESQNPLAS(ph)PTNTLLGSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 DYEIESQNPLASPTNTLLGSAK 22 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 DYEIESQNPLAS(0.552)PT(0.148)NT(0.3)LLGSAK;DYEIESQNPLAS(0.976)PT(0.02)NT(0.004)LLGSAK;DYEIESQNPLAS(0.999)PT(0.001)NTLLGSAK 315.06 1.6139999999999995e-67 564216000.0 477229.0 433952.0 391115.0 351997.0 342418.0 464467.0 410498.0 413678.0 555593.0 433146.0 True False 474659.6520891259 448395.8299904765 446180.5923674775 396559.7841089348 386022.90262950526 432359.48952771357 390640.6434853565 444548.75297432084 418674.54971477634 405502.2514450527 1.1705475133556549 1.1057788912208693 1.100315943444119 0.9779471820335143 0.9519624151379417 1.0662320319725775 0.9633501222083596 1.096291700946472 1.0324839090850486 1.0 18.62935039908798 3.952747915650227 3.3967047945966664 1.018253700635663 1.1350616572597907 0.5716249849690724 0.045144594700749587 0.18660149312192556 4.3331252776048075 0.012279417285605101 0.02601505279292387 8969.080369968084 -3.952747915650227 0.1168079566241278 DYEILFK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYEILFK 7 0 Q92820 Q92820 GGH Gamma-glutamyl hydrolase 0 ; 121.52 0.010306 50234000.0 131906.0 165937.0 160982.0 120976.0 95886.0 124039.0 153758.0 119403.0 237340.0 136695.0 False True 131195.8327521343 171460.11273396533 183646.866319372 136291.5491960511 108096.51373915134 115464.47588639878 146320.13812740002 128313.45817614846 178850.7371930625 127971.00806952277 1.025199650540063 1.3398356027704046 1.4350661848315067 1.0650189543088389 0.8446953366220713 0.9022705816591711 1.143385055214293 1.0026759975700095 1.3975879372294882 1.0 16.96545747800676 3.600570762512373 7.842676354764649 1.0380060546924297 1.2731350349298671 0.2504454041331746 0.17061874962084936 0.35949833077120263 21.437993938209498 0.045706159201107106 0.07091188052926449 3986.307185984424 -3.600570762512373 0.23512898023743745 DYEMNANHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYEMNANHK 9 0 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 0 136.57 0.00018913 200910000.0 216880.0 206010.0 181260.0 179240.0 194550.0 217260.0 199480.0 216610.0 269510.0 193460.0 False True 215712.34217763346 212866.91831432536 206779.83245983656 201931.7656221088 219324.7893118068 202241.32757502914 189830.39031239835 232774.53812329267 203092.87174897743 181113.21717056094 1.1910358920657307 1.1753251454523101 1.1417158597823616 1.1149477038549995 1.2109816872462744 1.116656921756136 1.0481310711499765 1.2852432404426917 1.1213586447294868 1.0 17.466532308690805 0.9806308494829425 24.360546083279534 0.9999999928691282 1.16230597601284 0.39099156102220256 0.06021985269167061 1020.3383052625903 1283279.683034862 0.057740547774387425 0.014435136965632105 9.563808015658372 -0.9806308494829425 0.1623059831437118 DYENDEDVNKQLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYENDEDVNKQLDK 14 1 A6NKE1;A0A087WWM0;O43617 A6NKE1 TRAPPC3 Trafficking protein particle complex subunit 3 0 169.09 3.0892e-06 273170000.0 240670.0 206540.0 184690.0 165980.0 177530.0 260310.0 303850.0 241450.0 492190.0 245820.0 False True 239374.25946095062 213414.5590439334 210692.74664574207 186993.05098168727 200137.39319725017 242315.38240382817 289151.6146802795 259468.22505825738 370896.3695081034 230131.5571429095 1.0401626896927547 0.9273589493482852 0.9155317474122155 0.8125484974907912 0.8696651414606592 1.0529428706439972 1.2564622525919777 1.1274778143404736 1.6116710550816822 1.0 17.81209930333534 2.4148475192274335 2.735295296113888 1.2489429011646263 0.9089475320935276 0.5110355165106908 0.15438294361033 0.2171226089531471 3.3205621099509153 0.057118499504263516 0.046649421203760276 259.92468075061754 -2.4148475192274335 -0.3399953690710986 DYEVELLR ddPTM_BT-474_Trastuzumab_2h_R1 3 DYEVELLR 8 0 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 ;; 159.2 0.00083884 331935000.0 382817.0 440470.0 389735.0 398001.0 391245.0 473041.0 460858.0 427831.0 546300.0 435189.0 False True 380755.95580696745 455130.77768026234 444606.300362652 448387.88579203846 441067.7316592024 440340.78908873815 438564.53789147397 459757.9217017984 411671.68504495645 407414.8654359525 0.9345656923920564 1.1171187315250553 1.091286396452184 1.1005682998636857 1.0826009777214187 1.0808166968025417 1.076456887311144 1.1284760589426124 1.0104483659535815 1.0 18.636139095632775 4.7465052703295845 24.681533480826857 1.0839548559891474 0.9345656047744706 0.524870291842723 0.039913986102018795 579.1441988124272 1799169.0426735247 0.008689580436309553 0.09612507171605515 55783.437163350565 -4.7465052703295845 -0.14938925121467683 DYEYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYEYNR 6 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 151.14 0.024247 4250900000.0 1965250.0 2114800.0 2095200.0 1983900.0 2054900.0 2055900.0 2342300.0 1797720.0 2519700.0 2160200.0 False True 1954669.3123598036 2185189.8395764055 2390185.94819513 2235061.536586152 2316579.3346534637 1913780.4720680378 2228994.000545069 1931874.995037193 1898753.6972501853 2022334.1865597325 0.9665412004358013 1.080528556605035 1.181894646334968 1.1051890194213143 1.1454977866908744 0.9463225636924234 1.1021887556264345 0.9552699093336185 0.9388921523797338 1.0 20.947589988649586 2.1717789186901912 1.1440048880011733 0.965358363029348 1.0948834492666462 0.312940100780845 0.07137480656957136 0.5696496127777786 1.4125562862294312 0.04997928693954971 0.026646874738286988 148.5179406576238 -2.1717789186901912 0.1295250862372982 DYFEEYGK ddPTM_BT-474_Trastuzumab_2h_R1 15 DYFEEYGK 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;;;; 157.33 0.0008808999999999998 128685979000.0 31726752.2 27996502.9 23164346.7 22196396.8 22684971.9 29395579.0 30910701.5 28169620.5 37648371.0 28118358.5 False True 31555938.89132878 28928349.57478312 26425685.367249105 25006458.35903214 25573768.607102327 27363531.813479856 29415432.77809826 30271780.62414455 28370434.42937524 26323820.787192117 1.1987598284623773 1.0989418978592287 1.0038696730569807 0.9499555008062909 0.971506713020371 1.0394969649236334 1.1174454124991753 1.1499767024273815 1.0777475906225171 1.0 24.649865569343845 2.2469757990097383 23.279488076088455 1.1049409672937198 1.036902947106687 0.0448053061302921 0.07544375378196741 159.34926025629113 440818.40057862905 0.028313515013148105 0.023281385835428364 176.5939411254161 -2.2469757990097383 -0.06803802018703276 DYFEEYGKIDTIEIITDR ddPTM_BT-474_Trastuzumab_2h_R1 25 DYFEEYGKIDTIEIITDR 18 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;;;;;;;;;;;;;; 278.07 3.3452e-39 6295744000.0 4998235.1 5490473.1 4916617.4 5541063.6 5037059.6 6130696.8 6567231.0 5871490.5 9544322.8 6700873.9 False True 4971325.157577728 5673220.178072416 5608834.393915468 6242561.683621947 5678499.2830686895 5706896.160323954 6249548.947271313 6309650.935934646 7192252.333313197 6273218.390795223 0.7924680519447911 0.9043555994155739 0.8940920026226705 0.9951130814737361 0.9051971299773058 0.9097238139672865 0.9962269058640392 1.0058076322024563 1.1465011873118405 1.0 22.580774357675494 5.271722638238743 0.2604992043048622 1.0588510089603036 0.5585487028092816 0.6035438280690215 0.05695069710994126 8.800031077631713 0.40359547418199226 0.07632318084273054 1.4827249005432748 186948.7812400024 -5.271722638238743 -0.500302306151022 DYFEQYGK ddPTM_BT-474_Trastuzumab_2h_R1 11 DYFEQYGK 8 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;;;;;;;;;; 188.98 0.00045163 44606757000.0 18197684.0 17750060.0 16601838.0 15349960.0 14868840.0 17911230.0 19059030.0 17602406.0 23286600.0 17399680.0 False True 18099709.69129675 18340860.01696215 18939232.48463724 17293263.362133127 16762298.639480663 16673068.828600224 18137071.906335015 18915986.91892654 17547929.454453386 16289217.525784492 1.1111466626709599 1.1259509542389052 1.1626852213532046 1.0616386781476344 1.029042592926721 1.023564747797623 1.1134403403739634 1.1612581690301629 1.0772727067261798 1.0 23.957413967965493 -2.5351148562502503 1.8064627400633662 0.0805047812635193 1.099283046745456 0.27744679745667544 0.04634827677681239 812072.0707420857 44892.1841515046 3058802.6755142333 0.012730910910619706 0.0029166555549203664 2.5351148562502503 1.0187782654819366 DYFGAHTYELLAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DYFGAHTYELLAK 13 0 P52209-2;P52209 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 208.27 4.7270000000000006e-08 9219680000.0 8650950.0 8041250.0 7653830.0 6993140.0 6581130.0 9104120.0 8465970.0 8039670.0 10570850.0 8677980.0 False True 8604374.246410891 8308898.145211734 8731422.735717032 7878470.806977196 7419197.896086407 8474773.613193287 8056438.687953957 8639631.000017058 7965805.659632936 8124143.8868075255 1.0591115034758547 1.0227413818586133 1.0747498884030897 0.9697601269434348 0.913228273582666 1.0431589754281845 0.9916661743321026 1.0634512534971976 0.9805101645932554 1.0 22.95378436077328 3.7415573306984555 24.99469845069502 0.9995322904423982 1.0492549696982338 0.2951194029158425 0.04024641153993613 412.3379955272156 3439179.7986596352 0.011221453457255408 0.01916404377806607 5515.150024165826 -3.7415573306984555 0.04972267925583562 DYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA ddPTM_BT-474_Trastuzumab_2h_R1 1 DYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 36 1 P52209-2;P52209 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 152.0 1.2963e-13 333660000.0 101310.0 209510.0 203130.0 214770.0 195240.0 218820.0 253070.0 151050.0 271960.0 257380.0 False True 100764.5582165991 216483.41369853073 231728.93836238893 241959.8599791357 220102.65672185645 203693.48844687414 240828.03727871767 162322.11801635858 204939.10207729528 240953.7880458961 0.4181903884300246 0.8984437034760195 0.9617152742925542 1.0041753729683967 0.9134641895728653 0.8453632960029467 0.9994781125119541 0.6736649352258367 0.85053280854941 1.0 17.878396956369958 4.738988223384988 24.993975359376286 0.8926062050844609 0.41819024635527385 0.6960641863074306 0.0962212298495718 21.391608088857943 1249962.3763519796 0.024721180988704877 0.14564200923000092 54826.20976833877 -4.738988223384988 -0.474415958729187 DYGHGSYGGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYGHGSYGGQR 11 0 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-2 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 111.86 0.0016042 77769000.0 134360.0 148600.0 143100.0 124130.0 136290.0 142670.0 152660.0 126440.0 195620.0 136250.0 False True 133636.62068879922 153546.06116940323 163247.2361525027 139844.84527266424 153645.72364588088 132807.55870905524 145275.25258216728 135875.59484931044 147412.0721737037 127554.40835050627 1.0476832781943501 1.2037691456925157 1.2798243374224767 1.096354466153652 1.2045504787547474 1.041183604914021 1.1389277286518076 1.065236369376889 1.1556799492858814 1.0 16.9607532345729 2.7438778731733415 24.972961057447858 1.0874758594656047 1.1709162816823362 0.2580282180847854 0.07239203158097651 626.7202924653127 2943449.392743811 0.02155658760246534 0.022241649465092574 554.4697700245448 -2.7438778731733415 0.08344042221673154 DYGHS(ph)SSRDDYPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 1 DYGHS(0.376)S(0.309)S(0.309)RDDY(0.001)PS(0.006)R 69.935 0.027547 112200000.0 40536.0 49311.0 43006.0 38839.0 49298.0 40030.0 44585.0 29936.0 41729.0 42038.0 True False 40317.75867997298 50952.28682587104 49060.87098514689 43756.013417747614 55575.80808786147 37262.82032048424 42428.25321876017 32169.97633192787 31445.447089952384 39355.09884945751 1.0244608667913115 1.2946806974307319 1.2466204486695927 1.1118257785382433 1.412162838173828 0.9468358969957941 1.0780878325590846 0.8174284215365736 0.7990183739656862 1.0 15.264262943065656 2.2905477460430084 1.664236369136265 0.8707893966239474 1.2131990245658324 0.535966269897246 0.12921924827457973 0.25683107118085213 1.4291005866674031 0.06293920263132434 0.04087087814602181 195.2305357382172 -2.2905477460430084 0.342409627941885 DYGHSS(ph)SRDDYPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 1 DYGHS(0.028)S(0.477)S(0.477)RDDYPS(0.017)R 72.583 0.023082 195810000.0 36484.0 41959.0 43854.0 46911.0 66796.0 45712.0 51657.0 42846.0 41836.0 49520.0 True False 36287.574197753456 43355.57995024887 50028.26201419879 52849.927790106805 75302.07466908985 42552.03703447351 49158.15356109665 46043.38608757957 31526.07837367893 46359.591203795026 0.7827414620252935 0.935201946877818 1.079135098372124 1.1399998666463753 1.6243041129949733 0.9178691168223713 1.0603664157649546 0.9931792945536247 0.6800335713723503 1.0 15.50058022434815 1.4905101533415193 3.9024735849665446 0.8359099323192022 1.087205311913737 0.14811301630635154 0.2213804606742933 0.36133700070455615 11.386306558243458 0.1539525599355203 0.05945103336905708 30.939276473327645 -1.4905101533415193 0.25129537959453485 DYGHSSSR ddPTM_BT-474_Trastuzumab_2h_R1 5 DYGHSSSR 8 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;; 136.8 0.00077559 232232000.0 110441.0 171952.0 180986.0 194507.0 193178.0 139486.0 178315.0 168479.0 162427.0 180359.0 False True 109846.39792714859 177675.3183728208 206467.25564148734 219131.5662567482 217778.07324428763 129843.66113472561 169689.22222055 181051.7584990271 122399.04226029136 168848.3342068913 0.6505625207563662 1.0522775910546662 1.222797113227669 1.2978011733787342 1.2897851451554287 0.7689958076555677 1.0049801380487908 1.0722744725285998 0.7249052401684625 1.0 17.36536842077473 2.7380857220223205 24.999998394625084 0.9389790816153413 1.117363689954493 0.17599517188408942 0.1990255998529401 87.29682290744327 4595482.092074571 0.06569036252628593 0.06549182713166883 547.1239447924208 -2.7380857220223205 0.1783846083391517 DYGHSSSRDDYPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ; 154.13 3.7265e-06 523380000.0 43987.0 106745.0 125874.0 158696.0 139637.0 106681.0 129732.0 108275.0 128436.0 140923.0 False True 43750.17887941514 110297.94279628487 143595.96508357849 178786.89732853274 157418.9442566578 99306.39357006187 123456.36753563302 116355.03030930956 96784.66875422666 131929.1734897497 0.3316186838903704 0.836039064588353 1.0884322343968542 1.3551733297444153 1.1932079925361507 0.7527250489276925 0.9357776166559932 0.8819507257683974 0.7336108170324163 1.0 17.009404097366954 4.6963896594312535 3.0740829899218607 0.9902659744028012 0.2596625535105125 0.5487082952475149 0.17970800527559724 0.26385370701084915 3.91655734854339 0.04862373358519151 0.44278867984053794 49703.80759391483 -4.6963896594312535 -0.7306034208922887 DYGNSPLHR ddPTM_BT-474_Trastuzumab_2h_R1 9 DYGNSPLHR 9 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20;A0A087WUW5;K7ELW5 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ;;;;;;;; 201.61 2.1193e-05 23887360000.0 4994830.0 7152630.0 7185470.0 7692700.0 7660350.0 7648950.0 7583900.0 6957920.0 7335080.0 7576820.0 False True 4967938.390257787 7390700.965693862 8197121.718775129 8666595.03124969 8635850.166048314 7120196.090191551 7217037.783688573 7477155.322001849 5527447.8190363515 7093260.860758048 0.7003744099898886 1.0419327740477358 1.1556210718435518 1.2218068954993293 1.2174725187148148 1.0037972985855512 1.0174499324584685 1.0541210127161142 0.7792534248410032 1.0 22.758017574241265 1.326215121222481 8.93238908194257 0.8903741008186923 1.0625659645615317 0.1574319308728891 0.14816342571382426 0.4482148405228649 40.302162596937194 0.10157384526085796 0.03706146905235886 21.19410693412058 -1.326215121222481 0.17219186374283946 DYGPGSYGGMDR ddPTM_BT-474_Trastuzumab_2h_R1 3 DYGPGSYGGMDR 12 0 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-2 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 ;; 190.57 1.5052e-05 722240000.0 217856.0 278494.0 216256.0 249489.0 248741.0 270087.0 265942.0 252158.0 284287.0 265848.0 False True 216683.08750207684 287763.50443682173 246702.96506915157 281074.28181931644 280416.6919465853 251416.52140641084 253077.3694629028 270975.3103923795 214228.27810063263 248881.353036076 0.8706280517153411 1.1562276599931118 0.9912472833325979 1.129350505333254 1.126708323166092 1.0101862527642533 1.0168595050438294 1.0887730522467103 0.8607646795844109 1.0 17.92509861761176 1.248722772212593 24.99996733703929 0.9303823225282221 1.0544409671702613 0.2323160912351221 0.08556750110371938 229.4596100170527 564503.8551514255 0.05382415915030317 0.019161290801040405 17.730573051597943 -1.248722772212593 0.1240586446420392 DYGRPLDEQESQFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYGRPLDEQESQFR 14 1 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 131.86 4.9045e-05 555250000.0 78149.0 100310.0 97522.0 98439.0 95266.0 108400.0 100340.0 84305.0 103890.0 94283.0 False True 77728.25446717015 103648.75771132449 111252.24992358025 110901.36730682205 107397.56041417939 100906.56314615266 95486.17086397661 90596.26719211593 78287.70155467783 88265.7782202626 0.880615976366326 1.1742802227684945 1.2604233732121652 1.2564480769667439 1.2167519799822581 1.143212751088487 1.0818028548470497 1.026403086437846 0.8869541869252543 1.0 16.429566574369034 1.7890116100996831 1.668294533721584 0.9478196974850949 1.1684708566255253 0.3849823586482318 0.10520348104597194 0.36131371475523233 1.9442605841813805 0.07840825255658422 0.03244266842797602 61.51933186021862 -1.7890116100996831 0.22065115914043043 DYGVYLEDSGHTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYGVYLEDSGHTLR 14 0 Q13162;H7C3T4 Q13162 PRDX4 Peroxiredoxin-4 0 ; 210.14 5.657600000000001e-09 586551000.0 398138.0 704930.0 722500.0 659710.0 583480.0 531600.0 707290.0 500920.0 851740.0 625540.0 False True 395994.46924529 728393.168910817 824221.7199174222 743229.2183584106 657782.7194430889 494851.74325179675 673075.680589814 538301.1940202197 641840.0897312673 585617.501648262 0.6761998542235084 1.243803620726332 1.4074403814735585 1.2691376474687646 1.1232292709690417 0.845008460059683 1.1493435197810766 0.9192027091149646 1.0960056486098226 1.0 19.159599144800314 2.9847807249094127 23.39842399052043 1.0009470165055931 1.1770847358439198 0.11213017167592632 0.19466177436587556 570.5208742574574 877133.4114915739 0.058625850187741996 0.06418672798953771 965.5632434448917 -2.9847807249094127 0.17613771933832667 DYHFVTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYHFVTSR 8 0 A0A590UJD9;A0A0C4DFT3;A0A590UJ18;A0A590UJ08;Q12959-4;Q12959-2;A0A590UJC5;Q12959;Q12959-3;Q12959-5;Q12959-7;Q12959-6;A0A590UKA8;A0A590UJR5;A0A590UJ68;A0A590UJS9;A0A590UK48;A0A590UJ81;C9JUA9;Q12959-8;A0A590UJX2;A0A590UK81;A0A590UJ29;Q12959-9;A0A590UJR4 A0A590UJD9;A0A590UJ08;Q12959 DLG1 Disks large homolog 1 0 78.934 0.028635 0.0 61910.0 80059.0 77210.0 74479.0 69998.0 83720.0 85829.0 42409.0 92276.0 66777.0 False True 61576.6834388476 82723.71541831252 88080.49687864937 83908.03376349618 78911.830389349 77932.63345568169 81677.12337137973 45573.77492853849 69535.8162350511 62515.234689333956 0.9849868395255903 1.323256896169446 1.4089445127473421 1.3422013718811514 1.262281598741443 1.2466182658189424 1.3065155042170078 0.7290027007818954 1.1123019305710926 1.0 15.931920190643208 1.7568338452179522 24.999999999992447 0.9270642217597811 1.2772201986459342 0.5299687229132388 0.1378304938303973 5.0562900171498155 6924.635576379434 0.0614941922362051 0.034102073647480434 57.126003903685685 -1.7568338452179522 0.3501559768861531 DYHQQFR ddPTM_BT-474_Trastuzumab_2h_R1 3 DYHQQFR 7 0 A0A6I8PIQ6;A0A0A0MS45;J3KNI1;Q9H9E3;Q9H9E3-3 A0A6I8PIQ6 COG4 Conserved oligomeric Golgi complex subunit 4 0 ;; 116.3 0.0054869 506880000.0 601980.0 645600.0 719060.0 621620.0 563850.0 664370.0 666100.0 283135.0 889370.0 574730.0 False True 598739.0065662655 667088.4057265585 820297.3978184388 700317.0282638659 635652.9552992155 618443.665658759 633878.1982508947 304263.9714303978 670196.6804474336 538050.239348892 1.1127938671504254 1.2398254975851675 1.5245739855280078 1.3015829694850372 1.1814007481316893 1.1494162076893657 1.1781022512283732 0.5654936085496314 1.2456024204328118 1.0 19.037381362229045 1.9666699505090193 17.568387205435222 0.8845090945264436 1.2543217218626546 0.3476988142683102 0.18903180721761345 16.254182359575864 8566.59335836911 0.07735241043858433 0.05002384228195646 92.61257308413022 -1.9666699505090193 0.369812627336211 DYIAPWER ddPTM_BT-474_Trastuzumab_2h_R1 3 DYIAPWER 8 0 Q9H0W8-2;Q9H0W8;M0R2N0;M0QZC7;M0QZH1;M0QX70;M0QYR7 Q9H0W8-2 SMG9 Protein SMG9 0 ;; 103.83 0.016451 0.0 491260.0 571110.0 511000.0 512890.0 553080.0 555650.0 549080.0 537000.0 628320.0 544430.0 False True 488615.110744117 590119.0511067141 582944.3583083779 577821.8214122041 623511.4596380055 517239.22335940704 522518.9027107067 577073.6668307486 473478.95505664893 509684.0112900265 0.9586628183752843 1.1578135433620997 1.1437367965161929 1.13368637942893 1.2233294469251215 1.014823325633186 1.0251820562081095 1.1322185001843725 0.9289656818118712 1.0 18.959243571265766 2.698105691719122 24.983376217247255 1.0373270987063052 1.1270513906813262 0.28925117897071173 0.07854090198531141 752.4221090555774 464665.68311720504 0.025243319277891585 0.023799884821014132 499.0059128473681 -2.698105691719122 0.08972429197502096 DYIHVVDLAK ddPTM_BT-474_Trastuzumab_2h_R1 4 DYIHVVDLAK 10 0 Q14376;Q14376-2;Q5QPP4;Q5QPP3;Q5QPP9 Q14376 GALE UDP-glucose 4-epimerase 0 ;;; 129.7 0.00029610000000000004 1777180000.0 4238320.0 4066850.0 3829340.0 3560300.0 3515320.0 4719530.0 4772360.0 4214770.0 6039200.0 4782310.0 False True 4215501.356041625 4202212.643787259 4368477.786780046 4011033.614954217 3962975.1650659535 4393279.999678613 4541502.714614383 4529297.5395684 4550920.08113399 4477098.881458423 0.9415698575476666 0.9386017050439549 0.9757385088973077 0.8959001623943618 0.885165878618032 0.9812783045451732 1.0143851710362448 1.0116590362402211 1.0164886239125277 1.0 22.094132751361553 2.516250117727191 5.386520254864613 1.010472968236746 0.928928323875582 0.7348610085211785 0.023739167650987155 0.10883490780531165 8.13961594898018 0.0085548361513185 0.00781325807806994 328.28430330681743 -2.516250117727191 -0.08154464436116393 DYIPVDQEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYIPVDQEELR 11 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 211.86 1.8353e-08 1339140000.0 802160.0 858630.0 820850.0 899970.0 855240.0 883210.0 835030.0 820190.0 1023270.0 900100.0 False True 797841.2596883542 887208.980497205 936418.5450438965 1013906.1097239961 964149.7445953725 822155.771552707 794636.4087756262 881396.7426404312 771098.8196155084 842654.8473856205 0.9468185724721069 1.0528735261534614 1.1112717715315859 1.2032282409217623 1.1441810933464587 0.9756732238632306 0.9430152941516045 1.0459759952429033 0.9150826367496511 1.0 19.68458229666977 2.724955860983486 24.04831336461555 0.9815946749470001 1.0968051742481428 0.40561275205996405 0.06973994383226076 528.1311018477568 933543.3921917543 0.02408791857983605 0.022831379028345488 530.8304911473339 -2.724955860983486 0.11521049930114269 DYIVVGSDSGR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYIVVGSDSGR 11 0 Q15393;Q15393-2;J3QL37;J3QRB2 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;;; 286.53 1.6026e-27 1851580000.0 1627370.0 1797940.0 1672170.0 1632780.0 1709730.0 1841330.0 1737130.0 1571630.0 2006430.0 1735030.0 False True 1618608.4207378065 1857783.3460223197 1907597.0012378064 1839489.7805872955 1927453.98113634 1714043.191124588 1653098.3854189715 1688913.0111754343 1511972.2112845557 1624298.8999660832 0.9964966551240073 1.1437447541589247 1.1744125427146683 1.1324823162939441 1.1866374970620166 1.055251093970684 1.0177304099962696 1.0397796927712628 0.9308460476800957 1.0 20.631385707894143 2.481030722056174 3.592519507024037 1.0060818907054931 1.1307041364979922 0.5472749592547683 0.05520922375192992 0.18507197917431042 5.161311931311539 0.01966223815121564 0.017099178055724355 302.71275599806967 -2.481030722056174 0.12462224579249903 DYIYAVTPLLEDALMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYIYAVTPLLEDALMDR 17 0 O75533;H7C341 O75533 SF3B1 Splicing factor 3B subunit 1 0 92.925 0.0074178 102250000.0 65359.0 82781.0 81406.0 86486.0 90007.0 84281.0 87157.0 77442.0 101800.0 88364.0 False True 65007.114406067594 85536.31554282871 92867.25720636357 97435.11873239077 101468.85793671431 78454.85284613371 82940.88293792705 83221.11528250798 76712.75405011265 82724.53386777351 0.7858263004536797 1.0339896949984577 1.1226084072568139 1.1778261439119206 1.2265872431375877 0.9483867624027421 1.002615295125136 1.0060028312220919 0.9273277281045782 1.0 16.336027636881507 DYKDEQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYKDEQGR 8 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6;C9JQF1;C9JPI5;C9JCJ2;C9J053 Q86U86-8 PBRM1 Protein polybromo-1 0 66.568 0.055949 241250000.0 227760.0 220060.0 180630.0 188960.0 187220.0 226630.0 239230.0 218520.0 322340.0 246110.0 False True 226533.76546651463 227384.56407092095 206061.1339358948 212882.3166254946 211061.35726012068 210963.6015296364 227657.53095265233 234827.07202207646 242903.6261347088 230403.04909462843 0.9832064564973502 0.9868991099051482 0.894350724721806 0.9239561605717382 0.9160527956964495 0.9156285142866833 0.9880838463172921 1.0192012342928285 1.0542552587268335 1.0 17.81380028359808 1.987247258475329 2.9063872800704402 1.0258949927451477 0.9356782834717918 0.6285447585406387 0.030401807231585393 0.18037476281751255 2.9067329216849314 0.016217573034015085 0.009293910760457295 97.10626685768563 -1.987247258475329 -0.0902167092733559 DYLDFLDDEEDQGIYQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYLDFLDDEEDQGIYQSK 18 0 P25205;P25205-2 P25205 MCM3 DNA replication licensing factor MCM3 0 116.82 0.00014947 22109000.0 22525.0 25071.0 21780.0 21010.0 19636.0 29151.0 29603.0 27503.0 37857.0 27212.0 False True 22403.727902762763 25905.473079260475 24846.43468484628 23669.863845796157 22136.52820830962 27135.859984072835 28170.989795558075 29555.413517404195 28527.649607810592 25475.306862634683 0.8794291673723825 1.016885614722731 0.975314441502929 0.929129685205613 0.8689405912820568 1.0651828506087095 1.105815523536528 1.160159274106877 1.1198157400668198 1.0 14.636811904018456 2.5571531780767924 4.790656290381155 1.1123742497095774 0.941061127870058 0.6587711514729588 0.055915910242316576 0.12774136389872606 5.2318646233596455 0.018619062454566685 0.01725506278977509 360.7058435433284 -2.5571531780767924 -0.1713131218395194 DYLEAAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYLEAAIR 8 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 130.22 0.0024594 267366000.0 505450.0 570680.0 501910.0 503980.0 484070.0 476570.0 503650.0 417980.0 579610.0 508300.0 False True 502728.7133607744 589674.7388166545 572574.5653200732 567783.816325767 545713.4451923226 443625.83762511093 479286.52537015895 449171.79005943384 436772.88187608885 475859.85882247594 1.0564637971456259 1.239177307949058 1.2032419938444052 1.1931744310830474 1.1467944502457104 0.9322615249011995 1.0072009993786035 0.9439161167552939 0.9178603191218765 1.0 18.860177235469692 2.803621915362335 4.710416700356842 0.9595161586476173 1.1782170550018054 0.8026804838490234 0.0514450459405613 0.08742732278434832 3.8827791663956295 0.015535322381131108 0.016356327519445126 636.241385767761 -2.803621915362335 0.2187008963541881 DYLGDFIEHYAQLGPSQPPDLAQAQDEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 DYLGDFIEHYAQLGPSQPPDLAQAQDEPR 29 0 Q00577 Q00577 PURA Transcriptional activator protein Pur-alpha 0 ;; 276.65 3.478099999999999e-71 891620000.0 391720.0 435655.0 447313.0 431099.0 407947.0 448803.0 442619.0 419028.0 453727.0 470631.0 False True 389611.0230441833 450155.51331599127 510290.7822857049 485676.08919842355 459896.6323586926 417778.304978623 421207.82800122007 450297.99714106985 341912.0604803089 440594.9266525296 0.884283952165082 1.021699266344484 1.1581857879360926 1.1023188416816398 1.0438082795297028 0.948214061729538 0.955997907650446 1.0220226559626104 0.776023598542146 1.0 18.74909335727548 2.7528536648576876 6.0158210176450435 0.9495547708851886 1.051134714714343 0.23644131701893523 0.08986993794275654 0.2615721844807641 39.35926916829959 0.02887170754207695 0.029487391310867254 566.0485273499445 -2.7528536648576876 0.10157994382915447 DYLHLPPEIVPATLR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYLHLPPEIVPATLR 15 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 ;;; 105.46 0.0013133 5304230000.0 1568980.0 1785750.0 1694620.0 1698160.0 1694760.0 1739080.0 1733780.0 1607400.0 2065420.0 1970440.0 False True 1560532.786010064 1845187.6092413291 1933207.7660989088 1913146.8818837337 1910577.6403704851 1618861.492953978 1649910.4377172156 1727352.3502118143 1556424.9162100551 1844684.832221443 0.8459617376106509 1.000272554428325 1.0479881074160853 1.03711314174999 1.0357203610058914 0.8775816143099525 0.8944131858721512 0.9363942935073997 0.8437348695146727 1.0 20.81494291957659 2.7361516168594253 24.969380076372648 0.9077209658604524 0.9992523066213309 0.28271959638091815 0.06569235957673536 259.15223345471384 2686103.08919591 0.020785936924743533 0.020443473676793146 544.6927777411818 -2.7361516168594253 0.09153134076087854 DYLHYHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYLHYHIK 8 0 O15144;H7C3F9 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ; 131.06 0.00059051 1021850000.0 1154270.0 1296260.0 1310060.0 984250.0 773570.0 1084290.0 1308030.0 150457.0 1930010.0 800500.0 False True 1148055.5385714527 1339405.2304942831 1494505.060754349 1108855.9490825748 872079.5541913868 1009335.5844441145 1244755.5917401563 161684.86534516525 1454384.8963090184 749411.4046574708 1.5319429774306517 1.7872762839878018 1.9942384803143394 1.4796358077702239 1.1636859924622889 1.3468377691762587 1.660977647263174 0.2157491390447489 1.9407029133400577 1.0 19.51539840742487 3.419310687115215 3.2380517452169753 1.151687674179088 1.772978939666189 0.22925861497514188 0.43957152879598016 0.32172592916842774 6.869659193677224 0.12734199295121962 0.18454948768474808 2626.096537746481 -3.419310687115215 0.621291265487101 DYLHYIR ddPTM_BT-474_Trastuzumab_2h_R1 6 DYLHYIR 7 0 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 ;;;;; 153.15 0.0017657 5644260000.0 3595100.0 4163150.0 4393350.0 3625890.0 2786570.0 3275150.0 3719830.0 3102840.0 5556730.0 3696990.0 False True 3575744.38105316 4301717.931072685 5011895.492317243 4084927.3022291255 3141423.172205612 3048746.5893738163 3539887.6117694397 3334389.6767022707 4187348.3478672183 3461044.9330476187 1.0331401210398452 1.2428957191505783 1.448087380912453 1.1802583847509163 0.9076516580902739 0.8808746053144263 1.0227800217122278 0.9634054862634153 1.209850905974819 1.0 21.72277624075073 3.383532810925456 5.621565803343247 0.9910015230120451 1.252678504272705 0.4494203210054889 0.12481763685490617 0.17656430278717386 8.563807387078587 0.035352231703053655 0.048201180554250614 2418.426042990051 -3.383532810925456 0.26167698126065997 DYLIDGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYLIDGSR 8 0 P18206;P18206-2;P18206-3 P18206 VCL Vinculin 0 ;;; 127.56 0.002724 1361540000.0 1808300.0 2029600.0 1957220.0 2009310.0 1998040.0 2256300.0 2040740.0 1773650.0 2385300.0 2033970.0 False True 1798564.3137210163 2097154.009080894 2232779.5635387907 2263688.4399808035 2252478.550689091 2100327.291758896 1942021.6098161424 1906008.7694122067 1797474.776382455 1904160.2932306735 0.9445445953867156 1.1013537129916617 1.1725796255054604 1.188811912541323 1.1829248612612582 1.1030202127549869 1.0198834713233265 1.000970756604948 0.943972407560704 1.0 20.860723499921267 2.1652737367360624 2.5232798808507333 0.9844887091455099 1.125785718187704 0.45695871756523954 0.067171216546288 0.26929211210396614 3.450116676097728 0.032589312285099516 0.021432872986600023 146.3099078349561 -2.1652737367360624 0.1412970090421941 DYLLCDYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYLLCDYNR 9 0 P47756-2;B1AK88;B1AK87;P47756;B1AK85;A0A6I8PRV6 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 160.88 0.00015112 1269930000.0 1114450.0 1445830.0 1661150.0 1075650.0 592660.0 896340.0 1282320.0 828820.0 2036510.0 1092080.0 False True 1108449.925027036 1493953.5775273086 1895025.4810253642 1211827.1797111211 668131.7380289669 834378.1255574035 1220289.2826618939 890670.7570626833 1534639.3983359023 1022382.5194232729 1.0841831740749186 1.461247184048148 1.8535386169301389 1.1852972411878815 0.6535046573427926 0.8161114941872022 1.1935740874660694 0.8711717387002192 1.5010422901220906 1.0 19.96350364390154 3.4839390510771437 24.649463009672164 0.9887256743421873 1.4747492030213571 0.3583320894670836 0.2750911773157012 257.99038150521915 932753.9862685655 0.07478747167258817 0.10525441062294297 3047.4672778108984 -3.4839390510771437 0.48602352867916987 DYLLS(ph)ES(ph)EDEGDNDGER ddPTM_BT-474_Trastuzumab_2h_R1 2 DYLLSESEDEGDNDGER 17 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER 275.91 1.4292e-35 477020000.0 551430.0 574170.0 440330.0 502850.0 527570.0 615590.0 591300.0 550750.0 668100.0 611340.0 True False 548461.1621496325 593280.9013569056 502324.6365830286 566510.7584416285 594752.9123476224 573035.7122429908 562696.5600146438 591849.761651833 503455.7070813389 572323.7578054937 0.9583057747814638 1.0366176368979851 0.8776931408703559 0.9898431625726068 1.0391896269134986 1.0012439714895414 0.9831787556264234 1.0341170597586398 0.879669418253366 1.0 19.126471970467072 3.5046441770129575 24.973254472197954 0.9959389331339804 0.9601669729314842 0.05997342937903505 0.05450169798840129 1863.6125948038139 1690967.5024182068 0.01397378451251793 0.02159140945556437 3196.2752876570894 -3.5046441770129575 -0.03577196020249618 DYMLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYMLFR 6 0 Q9NXG2 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 0 ; 126.04 0.041095 314840000.0 293980.0 395970.0 377640.0 350860.0 265860.0 313140.0 358280.0 286880.0 456700.0 333090.0 False True 292397.2443442482 409149.6220810803 430808.42949427746 395278.84002551384 299715.69512432266 291493.3688522717 340948.6276374881 308288.4423471228 344152.40446646843 311831.91102730355 0.9376758247126489 1.3120838747169008 1.3815405488008459 1.2676022756083607 0.9611450416890784 0.9347772262690234 1.093373114105808 0.9886366065983848 1.1036471646942347 1.0 18.250409046876417 3.2426243861554287 24.998762262273143 1.0132348040364774 1.2421666069540203 0.42700946137686613 0.11913054861404658 93.35809334146315 574299.1127591684 0.033468594798771206 0.043713989976572366 1748.3339305259362 -3.2426243861554287 0.2289318029175429 DYNKYEEGINIHLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYNKYEEGINIHLAK 15 1 Q12996;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 ; 150.74 1.8791e-06 1228780000.0 1628020.0 1470490.0 1312940.0 1298010.0 1273950.0 1652540.0 1611260.0 1536330.0 2356400.0 1776040.0 False True 1619254.9212100278 1519434.3707200226 1497790.5397209416 1462337.932912036 1436179.981206764 1538303.7994607296 1533317.1981890644 1650978.745925668 1775696.7941422937 1662691.6066556566 0.9738756812918558 0.9138401641277409 0.9008228186907147 0.879500399868733 0.863768106760039 0.9251888884883944 0.9221897747310962 0.9929554821332454 1.0679652119697267 1.0 20.66508917402436 1.651142943758198 2.5543254722869917 1.034675479821255 0.9068790939697008 0.720823739184224 0.03169935221799766 0.12451582810885689 1.8435631575450944 0.02179418237433614 0.008871128603481439 44.78606888617406 -1.651142943758198 -0.12779638585155417 DYNPYNYSDSIS(ph)PFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYNPYNYSDSISPFNK 16 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;H7C5M8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 DYNPYNYSDSIS(1)PFNK;DYNPYNYSDSIS(1)PFNK 396.08 9.607499999999998e-122 133172000.0 362690.0 338540.0 319020.0 294950.0 277310.0 317070.0 293470.0 261170.0 348500.0 275610.0 True False 360737.3173386469 349808.0992482482 363935.24302845116 332290.63975809515 312623.78475485544 295151.69720249635 279273.7349357306 280659.83159438794 262616.84466074925 258020.3338384079 1.3980964677170298 1.3557384956618375 1.4104905517112278 1.2878467166320349 1.211624603782756 1.143908671117924 1.0823710316979638 1.087743075978495 1.017814529397594 1.0 17.97712523920115 2.953998689723211 0.7006173366458908 1.0231271542877443 1.4159373631148569 0.9705951609642389 0.02534339277475774 0.11407733437661087 0.12414560719478251 0.017429722308454236 0.02241915080244756 899.4948677285154 -2.953998689723211 0.3928102088271126 DYNVTANSK ddPTM_BT-474_Trastuzumab_2h_R1 5 DYNVTANSK 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GXY2;F5GYU2;F5GXH2 P00338 LDHA L-lactate dehydrogenase A chain 0 ;;;; 183.72 0.00010431 1535240000.0 1490350.0 1360409.0 1256413.0 1116808.0 1044904.0 1898400.0 1868530.0 1299022.0 2008290.0 1730630.0 False True 1482326.12119345 1405689.3911803938 1433305.0294624344 1258195.7782910953 1177966.330768769 1767168.0763529155 1778142.065422224 1395961.617940059 1513373.8392072776 1620179.7117331126 0.9149146298146148 0.8676132536413027 0.8846580531052461 0.7765779124250348 0.7270590553863273 1.090723494162613 1.0974968101039475 0.8616091214022137 0.934077762020866 1.0 20.6277224162899 2.737621880576597 24.999376775868296 0.9862216409374029 0.83562877610816 0.4955200710580038 0.0816868647767532 88.03942723692737 2344540.643609354 0.028467726737886046 0.028286526811257633 546.5399095395618 -2.737621880576597 -0.15059286482924295 DYPDYYK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYPDYYK 7 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 0 100.45 0.022762 120830000.0 159980.0 142020.0 134710.0 140460.0 144570.0 173620.0 170030.0 154200.0 219070.0 171520.0 False True 159118.68545544895 146747.04984709714 153675.99707968975 158242.22159831162 162980.13256647604 161618.0580575186 161804.99932232345 165707.18701173444 165083.13388760484 160573.44675434017 0.9909402125426326 0.9138936282012062 0.9570448924522199 0.9854818763428859 1.014988068455788 1.0065055046416023 1.0076697149676772 1.031971290155142 1.0280848871617236 1.0 17.29287381559166 3.510072667424189 2.155653783578522 1.0171095123908611 0.9491368798854936 0.6574290891197018 0.01966349934588975 0.16946429834983814 1.5655303472609763 0.00562291598460163 0.00936355960740235 3236.478060977579 -3.510072667424189 -0.06797263250536756 DYPSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYPSSR 6 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;; 154.11 0.02337 1509180000.0 712685.0 861966.0 810540.0 756700.0 801547.0 675690.0 798321.0 747811.0 983460.0 834150.0 False True 708847.9831467472 890656.0172405494 924656.9866600247 852498.142413802 903619.259308716 628981.1407031727 759703.1633476235 803616.4541273158 741099.4606888394 780913.832848256 0.9077160031361459 1.1405304654317965 1.1840704412770984 1.091667360154774 1.1571305581986069 0.8054424371112321 0.9728386556769394 1.0290718646848087 0.9490156653850014 1.0 19.5748038425471 2.769875255920958 24.99976803577693 0.9611690259873822 1.1033118246761682 0.3933968018330817 0.08935898416603039 724.0882489850619 578068.3258580456 0.027446343924091128 0.029108858348973206 588.6745438098282 -2.769875255920958 0.142142798688786 DYPVVSIEDPFDQDDWGAWQK ddPTM_BT-474_Trastuzumab_2h_R1 5 DYPVVSIEDPFDQDDWGAWQK 21 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ;;;; 306.82 5.549899999999998e-56 999474600.0 2148964.0 1827552.0 1528982.6 1480232.0 1557526.6 2043860.0 1711305.6 1739840.0 2234276.0 2053333.0 False True 2137394.216596344 1888380.9635414856 1744250.0599249995 1667629.219428394 1755868.380326573 1902572.7689289283 1628523.210305759 1869675.6955285086 1683668.6175645362 1922287.529993174 1.1119014108175242 0.9823613450523665 0.9073824975242873 0.8675232988866737 0.913426505103952 0.9897441143654947 0.8471798234635284 0.9726306113712072 0.8758672109632397 1.0 20.874392715565957 4.656893675557689 2.51745834789285 0.9200653509019691 1.1356114852022288 0.5768536261877053 0.04944321156292152 0.2706803113193753 2.4469371954538324 0.011478197610809662 0.11473015404160303 45383.04957781462 -4.656893675557689 0.2155461343002597 DYQDDTLELYNREDR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYQDDTLELYNREDR 15 1 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 ; 112.24 0.001709 381640000.0 173715.0 191920.0 179370.0 198697.0 196283.0 188108.0 213683.0 189116.0 233256.0 186685.0 False True 172779.73774155095 198307.94118191002 204623.73688801107 223852.01982713738 221278.47658951094 175104.5367186022 203346.33694166937 203228.79623158998 175773.18427026607 174770.60347093045 0.9886086922523522 1.1346756104489537 1.170813242182608 1.2808333631712305 1.266108099388214 1.0019106945964589 1.163504232995865 1.1628316902012241 1.0057365528265305 1.0 17.41510301743767 1.2350934756259742 23.79014618377056 1.0028680673165018 1.151615691278585 0.2903125897032728 0.08929036455857624 62.67131649293805 429961.70956962864 0.07618544407990185 0.022081857687544844 17.18278181965785 -1.2350934756259742 0.1487476239620833 DYQDNK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYQDNK 6 0 P47813;O14602;X6RAC9 P47813 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal 0 ; 117.17 0.053394 948090000.0 1762190.0 1350300.0 1158490.0 1085240.0 1153560.0 955710.0 1411060.0 1469970.0 2134400.0 1774560.0 False True 1752702.5648377158 1395243.919226413 1321595.3222244065 1222631.272727835 1300459.0283142007 889644.0171993494 1342801.637027336 1579666.6257564125 1608405.7194946995 1661306.061522748 1.0550148497208238 0.8398476063751531 0.7955158611851667 0.7359458326463788 0.7827931640255402 0.5355088010597544 0.808280706444018 0.9508582809289788 0.9681573773470974 1.0 20.663886454042284 1.7187135272204968 4.002406522257519 0.974683970527154 0.7816820805380996 0.32351217100332474 0.1191410533327266 0.23016802774641484 8.396074976600579 0.06838512905829264 0.03325538484257238 52.32551689888891 -1.7187135272204968 -0.19300188998905443 DYQDNKADVILK ddPTM_BT-474_Trastuzumab_2h_R1 3 DYQDNKADVILK 12 1 P47813;O14602;X6RAC9 P47813 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal 0 ;; 161.76 5.5921e-05 1917270000.0 1353710.0 1460280.0 1350800.0 1409560.0 1329680.0 1712420.0 1873480.0 1565060.0 2972470.0 1944400.0 False True 1346421.7757713199 1508884.5370421002 1540980.8986359225 1588010.1514745555 1499006.8663691774 1594044.4360030876 1782852.6150113882 1681852.724413651 2239944.597557353 1820306.7273154089 0.7396675272178028 0.8289177391919028 0.8465501310916779 0.8723860257422414 0.8234913621287963 0.8757010080130763 0.9794242850713089 0.9239391906736784 1.230531406572796 1.0 20.79575013880983 1.8742550542379568 1.0771838333764474 1.0874395483232964 0.8242494641048732 0.6572222154525444 0.07531920246213755 0.3043700954986342 0.6501920135814155 0.05922807554664362 0.025471043821234756 74.86090176006665 -1.8742550542379568 -0.26319008421842316 DYRPTWK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYRPTWK 7 1 O00754;O00754-2 O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide 0 64.265 0.067901 494140000.0 361460.0 382690.0 355650.0 303320.0 331650.0 355650.0 370900.0 339050.0 423620.0 363970.0 False True 359513.9395219817 395427.60530901 405722.42863478384 341720.28089989995 373883.66165644134 331064.7526100483 352958.150024406 364351.63266101526 319224.5272171784 340741.12298960594 1.0550940736699643 1.1604927571981742 1.1907057917607442 1.0028736123826294 1.0972660369727267 0.9716019883521578 1.0358542782497453 1.0692916354335358 0.936853539767538 1.0 18.378316546769735 3.728770951450305 24.99681319665354 1.024503912876794 1.137937063504504 0.5016970618371688 0.05397673038011721 537.924952847053 1373530.6785121725 0.013946940145214857 0.021876177780773245 5355.1415083704 -3.728770951450305 0.11343315062770998 DYS(ph)YER ddPTM_BT-474_Trastuzumab_2h_R1 3 DYSYER 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 DYS(1)YER;DYS(1)YER;DYS(1)YER 113.94 0.026967 2946750000.0 1979740.0 1983510.0 1555310.0 1632220.0 1636510.0 1948040.0 1876420.0 1810650.0 2568640.0 1843490.0 True False 1969081.2998097918 2049529.931292884 1774284.1290031348 1838858.884644715 1844909.848145285 1813376.5799929064 1785650.3959794969 1945769.8972944033 1935633.0900125876 1725836.8899088067 1.140942873178379 1.1875571459138188 1.028071736893333 1.0654882251021303 1.0689943290311579 1.0507230379625998 1.0346576819747149 1.127435569764196 1.1215620093245697 1.0 20.718864690133408 4.244717057781506 24.999987333947963 1.068219292370596 1.1642500338698627 0.5197752534298926 0.03891622934427875 119.02922869955269 483338.4694132193 0.009736967983737703 0.025301043592103594 17567.78702295099 -4.244717057781506 0.09603074149926671 DYSDHPSGGSYR ddPTM_BT-474_Trastuzumab_2h_R1 6 DYSDHPSGGSYR 12 0 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;;; 182.23 1.7139e-05 6220120000.0 2857325.0 5426900.0 6162180.0 6375110.0 6009990.0 6070900.0 6156550.0 5568030.0 5012860.0 5783180.0 False True 2841941.47967865 5607531.08586968 7029761.381371259 7182198.272345243 6775326.602498408 5651232.972361423 5858734.156195079 5983544.672483448 3777507.8218825907 5414092.501170497 0.5249155752444639 1.035728718092157 1.2984191496269157 1.32657472527344 1.2514242416496615 1.0438005946776228 1.0821267192846173 1.1051796161941891 0.6977176361626466 1.0 22.36828810590548 -0.9427328612588217 7.050257735052332 0.9999999978484206 1.0677707632597038 0.0 0.24264060221519884 1.0488964009500519e-08 1.4877418824396674e-09 0.2346341460788457 0.05530379694857405 0.11409513820034087 0.9427328612588217 0.06777076541128313 DYSGQGVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYSGQGVVK 9 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 102.07 0.0084791 56931000.0 62488.0 68150.0 66486.0 67049.0 56032.0 69737.0 72079.0 56271.0 82939.0 66873.0 False True 62151.571551069464 70418.33155245511 75846.65089332835 75537.39652531117 63167.34307231639 64916.245333240295 68592.26340148055 60470.227758348265 62499.79477566109 62605.10788714423 0.992755601717158 1.1248016963631062 1.2115089878936736 1.2065692253334899 1.0089806599516717 1.0369161163376999 1.095633658600655 0.9658992660368155 0.9983178191838119 1.0 15.933992749532017 3.220228292099744 24.97287383387737 1.0187434863849196 1.1388012308335747 0.4392192371566437 0.06426736268493423 227.10171393588377 309364.39454776206 0.019597450206691847 0.02346530896270198 1660.45951851594 -3.220228292099744 0.12005774444865502 DYSSGFGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 DYSSGFGGK 9 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;; 163.99 0.00014564 1003210000.0 907870.0 835170.0 768520.0 754080.0 702410.0 907760.0 967290.0 845640.0 1117820.0 920690.0 False True 902982.1287938403 862968.1285790738 876720.935904411 849546.4506824348 791857.749989751 845008.6878371915 920498.4872933616 908745.9508729114 842348.2390205985 861930.7759576335 1.0476272039255095 1.0012035219653084 1.017159336177949 0.9856318794726417 0.9187022578582033 0.9803672306495368 1.067949437436733 1.0543143094795109 0.9772806152381806 1.0 19.717212481578436 2.261302574458423 24.97990092615453 1.0334566979050968 0.989762322686031 0.13138069571828315 0.039095522978414524 371.2248912812157 407754.8403077915 0.014380546072511902 0.012023980947876545 182.51668594834248 -2.261302574458423 -0.04369437521906572 DYSTVS(ph)ASPTALSTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYSTVSASPTALSTLK 16 0 A0A2R8YF49;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 DYSTVS(0.479)AS(0.458)PT(0.063)ALSTLK 200.77 3.6374e-11 137900000.0 111400.0 94592.0 87341.0 84898.0 98423.0 140360.0 104860.0 110480.0 144820.0 110310.0 True False 110800.23477770358 97740.4375379286 99637.85361841875 95646.07809521205 110956.58565117429 130657.24357190014 99787.52119589964 118724.5786060727 109131.05148857879 103269.92135885762 1.0729187484580192 0.9464560082144892 0.9648293743943348 0.926175568226172 1.074432750516057 1.2652013466522647 0.9662786596800357 1.149653035887487 1.056755442946006 1.0 16.656060587058338 3.123155336848347 6.425918660663146 1.0983481113100442 0.975067330502274 0.27413009914604103 0.0850401696333738 0.243931140024004 12.812708419792475 0.023496991756590844 0.02822839663976054 1327.869320201615 -3.123155336848347 -0.12328078080777016 DYSTVSAS(ph)PTALSTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYSTVSASPTALSTLK 16 0 A0A2R8YF49;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 DYSTVS(0.01)AS(0.942)PT(0.048)ALSTLK 142.62 1.5637e-06 154770000.0 210050.0 204450.0 205890.0 168650.0 219780.0 280410.0 240510.0 232650.0 320870.0 256750.0 True False 208919.1141387488 211254.99465736505 234877.52237203874 190001.07270792592 247767.68026188057 261025.91671413922 228875.61246257735 250011.5243727625 241795.8879377177 240363.99518526622 0.869178072937752 0.8788961695138046 0.9771743151090552 0.7904722691993787 1.0308019721127857 1.0859609672944042 0.9522042279508879 1.0401371643871213 1.0059571848576898 1.0 17.874861281226806 3.2125619648111092 24.996287266011255 1.0208998126430857 0.8859451978452639 0.6278881018891518 0.052772082062823696 139.35676597225853 133983.5685017166 0.014558356649015338 0.0174058412393917 1631.4056603597023 -3.2125619648111092 -0.13495461479782178 DYTEGWVEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYTEGWVEFR 10 0 Q9ULW3 Q9ULW3 ABT1 Activator of basal transcription 1 0 127.4 0.00083091 77128000.0 53862.0 64206.0 66784.0 63730.0 55464.0 73721.0 74583.0 65372.0 71411.0 68440.0 False True 53572.012976630744 66343.05789665341 76186.60670306593 71798.21146561598 62527.01163911619 68624.84079056747 70975.13535527168 70250.39059228993 53812.71590837517 64072.10060556813 0.8361207525631696 1.0354437777070153 1.1890761498842604 1.1205846349194992 0.975885152010801 1.071056515112971 1.1077385427426372 1.096427148920179 0.839877503621266 1.0 15.9674086696233 1.250203948501525 24.982755821762204 0.919938729352294 1.0623529086005996 0.22912495304044944 0.09744115118278962 260.280166929615 558483.0180062256 0.06630202557357595 0.023774083732077476 17.791147017768306 -1.250203948501525 0.14241417924830557 DYTGEDVTPQNFLAVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYTGEDVTPQNFLAVLR 17 0 Q99538-3;Q99538-2;Q99538;G3V2T4;G3V4E4;H0YJN9 Q99538-3 LGMN Legumain 0 109.84 0.0013659 16424000.0 18928.0 27335.0 20757.0 19851.0 19429.0 20180.0 21793.0 18156.0 21553.0 22522.0 False True 18826.093751098506 28244.828950643543 23679.405176921697 22364.13456463112 21903.167985294745 18785.00409861034 20738.789332655393 19510.892914299926 16241.551945403527 21084.626677945707 0.8928824796689617 1.3395935048822718 1.123064948628666 1.0606843984590804 1.0388217121342358 0.8909336828931979 0.983597653846437 0.9253610800094512 0.7703030361164523 1.0 14.36390385719474 3.0769361401193795 1.4784685285393275 0.9124903102455206 1.1358479919831939 0.36801136798390655 0.11725981566680081 0.3842115901881072 1.7418457082421852 0.04085073762453332 0.05206399378520903 1193.8125500066194 -3.0769361401193795 0.22335768173767323 DYTQINVGNLELSANHNILQIVDVCMESEKDHK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYTQINVGNLELSANHNILQIVDVCMESEKDHK 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 181.22 7.7894e-20 33861000.0 17732.0 15122.0 17470.0 13438.0 13666.0 19369.0 16738.0 14498.0 27687.0 17638.0 False True 17636.5328822104 15625.326628557965 19929.624148037867 15139.249422170818 15406.284095271909 18030.066619721692 15928.31899463066 15579.9143793523 20863.909836792438 16512.327739348482 1.0680827779467434 0.9462824911913046 1.2069542503414614 0.9168452601685194 0.9330170971933353 1.0919155012140702 0.9646319553525973 0.9435322884383972 1.2635353516557353 1.0 14.011255890551666 -1.0685469474930007 5.61264406076897 0.999999851229513 1.0251440048538945 0.0 0.11530172353394441 2.015358767574733e-07 3.3364193821089915e-08 0.10472351484949352 0.024683423144563253 0.08539905255425075 1.0685469474930007 0.025144153624381493 DYTYEELLNR ddPTM_BT-474_Trastuzumab_2h_R1 6 DYTYEELLNR 10 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 ;;;;; 310.55 1.624e-41 4227280000.0 2000070.0 2430440.0 2323660.0 2315590.0 2269730.0 2377530.0 2397690.0 2134260.0 2922510.0 2385800.0 False True 1989301.8453486648 2511335.7261679927 2650811.130385214 2608743.4565772098 2558766.661756293 2213176.9472036213 2281704.574634722 2293529.318752685 2202296.5701276534 2233536.201413858 0.8906512659563836 1.1243765489801705 1.18682255013696 1.1679879891473621 1.1456123523480657 0.990884744022797 1.021565969331669 1.0268601499724295 0.9860133758895738 1.0 21.09089820752343 2.7337067753995528 24.913725184532094 1.0097484443304998 1.112529956684993 0.27945821003626636 0.07778599822832452 526.2247010571074 2700989.6409914526 0.02547799921324292 0.024713731598620243 541.6350686812223 -2.7337067753995528 0.10278151235449329 DYVAPTANLDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 DYVAPTANLDQK 12 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 101.39 0.0028756 0.0 103750.0 111220.0 100740.0 105770.0 102970.0 121670.0 113930.0 103970.0 144010.0 108270.0 False True 103191.42152770863 114921.89046609022 114923.31635222286 119160.47115515757 116082.61914899376 113259.23928037273 108418.77064513513 111728.76934896257 108520.66513513484 101360.11590538936 1.0180673197338155 1.133797938563523 1.1338120060901817 1.1756149851523774 1.1452494712747423 1.1173945320473995 1.0696393712329058 1.1022952011346496 1.0706446432680603 1.0 16.629130553752272 0.9008734802182378 0.7346074941203327 1.000495524767975 1.123303363991792 0.42972357168754516 0.04048627652698701 0.7633721322268081 0.902010439101872 0.040229070586321275 0.01516042510407062 7.95927445015715 -0.9008734802182378 0.122807839223817 DYVAVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYVAVAR 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 96.048 0.030286 959150000.0 779990.0 990530.0 939050.0 910300.0 841760.0 946390.0 909390.0 809780.0 1124030.0 946180.0 False True 775790.6205050359 1023499.1922619694 1071260.07763108 1025543.8866648386 948953.1464975915 880968.2868624298 865399.3314928412 870209.8955795219 847027.8677303364 885793.9823345473 0.8758138302773372 1.155459635845001 1.2093783644902725 1.1577679540811223 1.0713023179459693 0.9945521243445353 0.9769758530217657 0.9824066463920279 0.9562357440021875 1.0 19.75661167070543 2.807428802148922 3.0375961231046213 0.9789980175422555 1.1115799601600076 0.30731408090461276 0.08395562329653312 0.30495791290487073 5.542160077658587 0.027963791308518046 0.02917232708279657 641.842989713625 -2.807428802148922 0.13258194261775214 DYVDLFR ddPTM_BT-474_Trastuzumab_2h_R1 9 DYVDLFR 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;;;;;;; 145.04 0.0053813 5019065000.0 4883967.0 5457301.0 5389286.0 5208733.0 5089506.0 5497080.0 5389676.0 5243990.0 6147501.0 5612897.0 False True 4857672.264331748 5638943.9647768745 6148050.624286341 5868158.063736576 5737624.421234517 5117079.798334436 5128956.781318261 5635323.162241662 4632531.750843048 5254677.10801711 0.9244473379573317 1.073128538416468 1.1700149215460265 1.1167495058418473 1.0919080855568783 0.9738143168734876 0.9760745857234432 1.0724394756137912 0.8816016009385526 1.0 22.325170684800955 2.7421004261305257 24.53851466325828 0.9920555821264228 1.0827021222919724 0.28637491828609984 0.07301823961762487 339.16353737566607 2351141.617424501 0.02332213203365106 0.023866993615080663 552.2051162697452 -2.7421004261305257 0.09064654016554963 DYVFYLAVGNYR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYVFYLAVGNYR 12 0 Q9Y3D6 Q9Y3D6 FIS1 Mitochondrial fission 1 protein 0 ; 166.34 0.00012139 222070000.0 391680.0 427110.0 446970.0 397820.0 380250.0 535790.0 484870.0 423110.0 617180.0 503500.0 False True 389571.2383997387 441326.09815655265 509899.49086711416 448183.9712105961 428672.5835816728 498752.0984139957 461414.98571672605 454684.6167090461 465084.25878829573 471366.1989319624 0.826472579668297 0.9362701423150924 1.0817481016298194 0.9508190706633326 0.9094258021745593 1.0580989887354781 0.978888572753447 0.9646101433222959 0.9866729091778313 1.0 18.846488782915394 4.6401685540602635 3.703273950972552 0.9872531174291499 0.8230856076677628 0.5231300447172171 0.04749570766308582 0.18205044541904744 4.048545579443231 0.011303640449722057 0.06619012347638506 43668.528130917424 -4.6401685540602635 -0.16416750976138705 DYVIEDDVNMAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 DYVIEDDVNMAIR 13 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 167.18 7.5278e-05 44466000.0 55649.0 63201.0 53573.0 57761.0 62049.0 69744.0 62746.0 65975.0 78454.0 68364.0 False True 55349.39196718514 65304.60707918874 61115.61273513637 65073.536677631215 69950.57235676318 64922.761439716465 59710.73626700293 70898.38951426178 59120.06292974006 64000.95099063495 0.8648213989083418 1.0203693237112141 0.9549172596525827 1.0167589023349546 1.092961452510273 1.0144030742483248 0.9329663910109743 1.1077708755395856 0.9237372572540509 1.0 15.965805721838333 5.557923212273245 1.3728543005560132 1.0161997513073928 1.692017976419237e-17 0.3305901234135312 0.0585818505654847 11.555764406353488 3.563565308882604 0.015253566419890688 27.967510658221155 361345.9673112717 -5.557923212273245 -1.0161997513073928 DYWETELLQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 DYWETELLQLK 11 0 Q13137;Q13137-3;Q13137-4;Q13137-5;Q13137-2;D6REB0 Q13137 CALCOCO2 Calcium-binding and coiled-coil domain-containing protein 2 0 ; 148.32 8.115600000000001e-05 24370000.0 35636.8 47621.0 41301.0 36832.0 41168.0 50037.0 45740.0 39996.0 49033.0 45298.0 False True 35444.935428420686 49206.03619749763 47115.8218052726 41494.92742352995 46410.50077814681 46578.059964428416 43527.3814562317 42980.70461557279 36949.4741585381 42407.0428584311 0.8358266231094618 1.1603269853491989 1.111037663308922 0.9784914162030562 1.0944054961125347 1.0983567073969662 1.0264186918559888 1.0135275114338145 0.8713051339582392 1.0 15.372016263516075 4.762305938419544 24.03001496788026 1.0416866699145844 0.8358262193714702 0.3802346309152821 0.07788658104126349 4474.28636115885 4527806.061665812 0.01869750503891109 1.0926558124667491 57850.34302028026 -4.762305938419544 -0.2058604505431142 DYYINIR ddPTM_BT-474_Trastuzumab_2h_R1 2 DYYINIR 7 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 149.4 0.004697 3106300000.0 3413800.0 4273900.0 3970100.0 3634500.0 3453500.0 3850200.0 4018700.0 3327600.0 4361700.0 3974800.0 False True 3395420.480108837 4416154.177872888 4529055.571272183 4094627.327346317 3893282.7545017977 3584044.7363959164 3824300.1280751666 3575922.409210422 3286817.4787856275 3721124.861002515 0.9124715259337121 1.186779359154082 1.2171200216194846 1.1003735376520465 1.0462650139218659 0.9631616433935872 1.0277269027314646 0.960978882134857 0.883285995917944 1.0 21.827307369711775 2.995858718108125 2.2959981679708985 0.9683659260113705 1.118981004866365 0.37415713553170304 0.0830788160314078 0.30812349161151803 3.2639483183164177 0.02734859237643832 0.0318693021912037 990.5096662310924 -2.995858718108125 0.1506150788549946 DYYSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 DYYSSR 6 0 C9J384;Q9BQ75-2;Q9BQ75;H7C515;Q14011;K7EMY9;K7EPM4;K7EQR7;D6W5Y5;Q14011-2;K7EJV1;Q14011-3 C9J384;Q14011 CMSS1;CIRBP Protein CMSS1;Cold-inducible RNA-binding protein 0 ;;; 150.82 0.024342 9954800000.0 6298220.0 7955240.0 6853950.0 7011380.0 6981270.0 6475230.0 6812670.0 6412080.0 8604600.0 6723840.0 False True 6264311.083318026 8220025.354355865 7818926.584398644 7899019.989107013 7870293.353270809 6027612.591151864 6483115.125173287 6890581.969482507 6484111.625732816 6294718.774630955 0.9951693328325518 1.3058606188229251 1.2421407316734414 1.2548646368352037 1.2503010277424549 0.9575666216327907 1.0299292720274666 1.0946608126884088 1.0300875794269242 1.0 22.5857104942886 2.747351660670877 24.987003459338876 1.0343488213107481 1.2193263970927992 0.5482756836887814 0.08439670271614604 489.6186950937907 1391655.4412674038 0.02543161952908425 0.026609521152889982 558.9225871689503 -2.747351660670877 0.1849775757820511 EAAAAALKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAAAAALKK 9 1 P15559-2;P15559;B4DLR8;P15559-3;H3BNV2;H3BRK3 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 118.18 0.0016542000000000002 483120000.0 376310.0 369200.0 315790.0 324770.0 306980.0 391870.0 347650.0 291420.0 526280.0 399710.0 False True 374283.9887719715 381488.5988138871 360250.4871041148 365885.8487005821 346072.08338698756 364780.94926275685 330832.84134803095 313167.2402007757 396585.34579070023 374200.1655910527 1.0002240062635632 1.0194773650389017 0.9627213460344032 0.9777810977786767 0.9248314544178874 0.9748284014962472 0.884106613970834 0.8368976526403324 1.0598214064504488 1.0 18.51345067143704 3.6554082984066896 1.0544452828766535 0.9264613384798034 1.0109739257576384 0.06757243808571223 0.06049498598189643 0.9750108990421538 2.082998612318638 0.022405580016609028 0.061228681964606686 4522.809527997789 -3.6554082984066896 0.08451258727783506 EAAAALVEEETRR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAAAALVEEETRR 13 1 O75934 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 0 ;;; 216.34 4.4317e-11 2557480000.0 1313220.0 1563960.0 1382490.0 1501640.0 1451880.0 1493500.0 1506570.0 1336560.0 1681530.0 1543410.0 False True 1306149.7694324576 1616015.463166215 1577132.5751815024 1691747.4700333816 1636768.312033031 1390257.8603208405 1433691.4534437044 1436300.8941141616 1267139.4628476026 1444908.25242022 0.9039672707555362 1.1184208135425835 1.091510531924644 1.170833834743283 1.1327835586041157 0.9621772579623377 0.9922370164626525 0.9940429724228919 0.8769688045764463 1.0 20.46254645791128 2.7280817389175174 24.455934553407616 0.969430052996342 1.0907396223016503 0.3890379273517177 0.07382119851687927 551.5633441732749 1287253.0201911412 0.023819877647292386 0.022687955178993288 534.6649796582644 -2.7280817389175174 0.12130956930530834 EAAANTNRPS(ph)PGGHER ddPTM_BT-474_Trastuzumab_2h_R1 2 EAAANTNRPSPGGHER 16 1 O60356;O60356-2 O60356 NUPR1 Nuclear protein 1 1 EAAANTNRPS(1)PGGHER;EAAANTNRPS(1)PGGHER 157.01 6.5381e-08 1627700000.0 353440.0 347750.0 324030.0 327990.0 310880.0 330650.0 302650.0 303920.0 355280.0 368220.0 True False 351537.11831087555 359324.64853068587 369650.6074807509 369513.5003704279 350468.7252698769 307792.9437663779 288009.66326472483 326600.05367448955 267726.00450809463 344719.8843509976 1.0197761552766609 1.042367048849487 1.0723216856976214 1.0719239508510194 1.0166768474342656 0.8928784144432461 0.8354889762363409 0.9474360734640469 0.7766479877194813 1.0 18.395064993992552 2.802751254168628 3.5616180852662302 0.8867473376730954 1.051509839211098 0.6436618544058141 0.057729669746406066 0.1423848362801187 3.5965280485336426 0.0174210508206788 0.01819108841800065 634.9671448872334 -2.802751254168628 0.16476250153800254 EAAANTNRPSPGGHER ddPTM_BT-474_Trastuzumab_2h_R1 4 EAAANTNRPSPGGHER 16 1 O60356;O60356-2 O60356 NUPR1 Nuclear protein 1 0 ;;; 182.7 1.263e-09 720230000.0 244751.0 467280.0 433214.0 527890.0 489500.0 441981.0 461241.0 418377.0 366448.0 451582.0 False True 243433.28781039224 482833.13232327485 494206.76563641004 594720.8198742182 551834.9235061907 411427.8937813624 438929.0107182723 449598.41621535906 276141.8005516275 422761.6501411989 0.5758168644887434 1.1420930260869513 1.1689962073696825 1.4067520544391536 1.3053097964819713 0.9731911436241885 1.0382422591350793 1.063479660620108 0.6531855490189292 1.0 18.68948498630293 1.3789817269961637 6.70146434516308 0.8277794623822327 1.102680284247295 0.17348910656702599 0.22327091360160284 0.3512145190734358 19.59462180199357 0.1535304670229451 0.05590600246731708 23.93215059413379 -1.3789817269961637 0.27490082186506226 EAACESSTPSWASDHNYNAVKPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAACESSTPSWASDHNYNAVKPEK 24 1 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 Q9BTC0 DIDO1 Death-inducer obliterator 1 0 211.92 1.5081e-25 216350000.0 140960.0 133930.0 136560.0 132360.0 134580.0 170290.0 165410.0 162870.0 209520.0 180540.0 False True 140201.0870221283 138387.7790876053 155786.46099920163 149116.76242882354 151717.96528184487 158518.2531195417 157408.4863724375 175024.1864371021 157886.60342416127 169017.7826319296 0.8295049481713089 0.8187764443045185 0.9217163932298069 0.8822548734623709 0.8976449869315907 0.9378791429582725 0.9313131667052237 1.035537111608266 0.9341419640322184 1.0 17.36681551718838 3.497448265790652 0.38087265074903426 1.0077441727993273 0.77941542055527 0.7226013087894061 0.033620099501207236 1.2034309952372058 0.26782669305367074 0.03366314510129436 0.11603481702573494 3143.7519066201385 -3.497448265790652 -0.22832875224405724 EAADAIDAEGASAPLMELLHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAADAIDAEGASAPLMELLHSR 22 0 P14923 P14923 JUP Junction plakoglobin 0 ;;; 168.64 9.1967e-12 307000000.0 229466.0 273723.0 261812.0 243805.0 278495.0 327771.0 261136.0 254568.0 306905.0 283344.0 False True 228230.58055206912 282833.7045859522 298672.85388930084 274670.68800211046 313959.6874808105 305112.962259941 248503.8540436054 273565.1568301111 231272.37506630487 265260.7433369969 0.8604008934036527 1.0662478775709001 1.125959499818848 1.0354743206504509 1.1835889605494496 1.1502379071309259 0.9368286121700906 1.0313066056765285 0.8718680802778572 1.0 18.017051657415244 2.2242545232165667 24.995578426331598 0.9690493251383502 1.0762272364961747 0.25643374677586184 0.09117846345073592 351.4623029648468 614070.2300858774 0.03449206278139114 0.025591248971512395 167.59247830342406 -2.2242545232165667 0.1071779113578245 EAADGYQR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAADGYQR 8 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 132.08 0.0022738000000000003 2288630000.0 3195200.0 3871480.0 3502300.0 3781900.0 3453150.0 3656750.0 3899620.0 3288300.0 4127780.0 3727920.0 False True 3177997.3982200925 4000339.871440919 3995393.397462685 4260688.152233059 3892888.1840764093 3403967.4795635953 3710980.4826049497 3533689.643649065 3110543.9284182177 3490000.9539671163 0.9106007247956862 1.1462288762109638 1.1448115488109207 1.220827217078521 1.1154404355251901 0.9753485814077713 1.063317899207633 1.0125182457707604 0.8912730883017191 1.0 21.734796000109657 2.7463504157778753 23.16428412791936 0.9974247729063473 1.1180885778158929 0.325654348145222 0.08452889021221473 264.4269711198786 786316.9468966885 0.02635049340081333 0.02742813938567762 557.6355024414452 -2.7463504157778753 0.12066380490954554 EAAEAVVEAMDFHGEVTFDTTK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAAEAVVEAMDFHGEVTFDTTK 22 0 Q13630;H0YCP7 Q13630 TSTA3 GDP-L-fucose synthase 0 ; 147.9 7.4707e-08 50177000.0 53388.9 49819.7 40532.8 42533.9 40448.4 55502.4 50033.5 43998.5 63707.3 48277.3 False True 53101.46009446444 51477.9185978554 46239.465922586714 47918.68737890097 45599.263983550176 51665.64972659615 47613.18845846889 47281.89148985599 48007.48954908394 45196.20138172403 1.1749098037238381 1.1389877251646974 1.02308301381462 1.0602370534236496 1.0089180636757924 1.1431414177981818 1.0534776596893873 1.0461474647065216 1.0622018683299501 1.0 15.463913902675698 4.368527228753796 4.849660120714166 1.0535174526092004 1.1665915618101446 0.5696030929038136 0.03764870516255897 0.1339261516750779 4.989979512203753 0.008886629086596019 0.026156286747556313 23362.92575047426 -4.368527228753796 0.11307410920094418 EAAELEEAS(ph)AES(ph)EDEMIHPEGVASLLPPDFQSSLERPELELSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAAELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSR 43 1 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 EAAELEEAS(0.998)AES(0.998)EDEMIHPEGVAS(0.003)LLPPDFQSSLERPELELSR 61.802 0.025971 18156000.0 3747.1 3286.3 3958.2 5597.9 4609.8 5104.2 6803.2 3903.8 5991.6 4728.1 True False 3726.926029941949 3395.682508889699 4515.480154708841 6306.5935660343785 5196.8307055747455 4751.358667994394 6474.103225252194 4195.121379094734 4515.0504633266755 4426.348610069936 0.8419865578285448 0.7671520722892289 1.0201365849124786 1.4247846524530148 1.17406719700115 1.0734262225042692 1.4626284090059287 0.9477611793953237 1.020039509101236 1.0 12.11190136395587 4.064833670622882 4.7401552938632445 1.1625880390354244 0.8117136190621187 0.42515162190031663 0.16248940975336545 0.18249893244556914 8.078134880564713 0.041062721088690884 0.09228042134207938 11610.038786573754 -4.064833670622882 -0.3508744199733057 EAAELEEASAES(ph)EDEMIHPEGVASLLPPDFQSSLERPELELSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAAELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSR 43 1 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 EAAELEEAS(0.118)AES(0.882)EDEMIHPEGVASLLPPDFQSSLERPELELSR;EAAELEEAS(0.106)AES(0.894)EDEMIHPEGVASLLPPDFQSSLERPELELSR;EAAELEEAS(0.029)AES(0.971)EDEMIHPEGVASLLPPDFQSSLERPELELSR;EAAELEEAS(0.158)AES(0.842)EDEMIHPEGVASLLPPDFQSSLERPELELSR 244.38 3.2668e-55 470357000.0 35719.7 43167.6 41105.1 33409.4 35884.4 43875.700000000004 36440.5 35855.3 44076.299999999996 41755.0 True False 35527.38910403173 44604.407470634775 46892.3407880659 37639.026614457056 40454.06563649757 40842.67613128828 34677.733798771565 38531.004555524254 33214.28645716093 39090.16015174599 0.9088575991020817 1.1410648433642316 1.1995944914534051 0.9628772680476183 1.034891273902613 1.04483266307273 0.8871218143940671 0.9856957455776306 0.8496840721098297 1.0 15.254517874886718 2.566239518042782 1.197875484158669 0.9305426933682595 1.0702105828362787 0.2666848317896867 0.08906298639626921 0.591147537995253 1.729498063249847 0.04682727119453726 0.036839451628102 368.33205669729193 -2.566239518042782 0.13966788946801922 EAAEMGK ddPTM_BT-474_Trastuzumab_2h_R1 7 EAAEMGK 7 0 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5;P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;; 127.84 0.008876299999999998 8848380000.0 9611030.0 8961660.0 7760250.0 7654130.0 7847580.0 6889880.0 9664240.0 9167430.0 12758660.0 9926100.0 False True 9559285.282365821 9259943.435662137 8852825.746697817 8623142.07320436 8846922.796749162 6413598.812632977 9196743.790218033 9851550.17786629 9614459.200284991 9292607.79983824 1.0286978088682732 0.9964849087705315 0.9526739896255949 0.9279571740189517 0.952038758905026 0.690182879852588 0.9896838420726338 1.060149141131059 1.0346352076165697 1.0 23.147652088638267 2.006722002303456 24.99996732187564 1.0349376760765032 0.9230470196799184 0.2408019875735864 0.08624364266554484 235.44505374182884 875645.4211937989 0.033926975395918615 0.024997990255181783 101.55983866705343 -2.006722002303456 -0.1118906563965848 EAAENSLVAYK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAAENSLVAYK 11 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 ; 134.75 0.0005481 240920000.0 318300.0 336780.0 282470.0 282330.0 274720.0 355540.0 297630.0 298230.0 418990.0 354160.0 False True 316586.30816645484 347989.5187121911 322239.3207267463 318072.949052053 309703.96360698814 330962.35665113624 283232.4998429872 320485.43698125536 315735.52867835714 331557.20558836893 0.9548467137206464 1.0495610194767506 0.9718965997282807 0.9593305278575162 0.9340890753901703 0.9982058935013127 0.8542492670016731 0.9666067622102616 0.9522807025655339 1.0 18.33889828323175 3.9130280052260744 3.344855648882922 0.9470944883196715 1.0036048839290133 0.15664564455669217 0.04407912249441864 0.3493448722628751 7.426213839014356 0.010932381802223447 0.022455639856206615 8185.175680604618 -3.9130280052260744 0.05651039560934179 EAAEQDVEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAAEQDVEKK 10 1 P26373;P26373-2;J3KS98 P26373 RPL13 60S ribosomal protein L13 0 124.12 0.00071174 248720000.0 411640.0 249520.0 240580.0 266690.0 329430.0 403270.0 412800.0 375880.0 448300.0 460930.0 False True 409423.77597750333 257825.12236197494 274451.5728411536 300452.9266556584 371380.9578154124 375392.89409547014 392831.2869508619 403930.0742799653 337822.47191223496 431513.0527779734 0.9488097134993604 0.5974909002222786 0.6360214855015458 0.6962777249063902 0.8606482594780259 0.8699456289416607 0.9103578314072125 0.9360784608473932 0.7828789181171187 1.0 18.71904467438157 3.164578751926881 3.9500984519752222 0.8972737360126131 0.7041819873025572 0.4144881838097245 0.10113011178124741 0.2014356053800274 6.130431872510871 0.028991626012684683 0.03594154231388804 1460.7596093680431 -3.164578751926881 -0.19309174871005585 EAAEVLQNNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAAEVLQNNR 10 0 P61081;M0QX69 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 147.2 6.353600000000001e-05 248210000.0 123560.0 142910.0 118190.0 122050.0 120130.0 141310.0 131460.0 132780.0 153460.0 149680.0 False True 122894.76668880659 147666.67295908066 134830.12467410383 137501.51748593157 135427.843433705 131541.57230795966 125100.77757403176 142688.71784317808 115641.83925864719 140127.29425250491 0.8770223341881856 1.0538037842434183 0.9621974462101883 0.9812614895579032 0.9664629875009815 0.9387291248978658 0.8927652406432979 1.0182792624687205 0.8252627717927978 1.0 17.09637846837467 2.816869358814593 4.223162385263897 0.9394329291105082 0.9740261128690749 0.0578207666273578 0.0640910184949708 0.7069866241247924 23.728655223953226 0.019026440892170947 0.02007991829199798 655.9479193240874 -2.816869358814593 0.03459318375856668 EAAEVLQNNRR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAAEVLQNNRR 11 1 P61081;M0QX69 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 ;;; 169.21 2.7519e-05 2579930000.0 1343660.0 1818590.0 1719310.0 1879280.0 1665160.0 1619280.0 1786340.0 1440080.0 1853550.0 1745110.0 False True 1336425.8838546595 1879120.6687891323 1961373.9034895801 2117196.6553130825 1877208.2558234294 1507342.9849751105 1699927.909718517 1547546.0821780711 1396767.4387975086 1633735.5857361627 0.8180184697712052 1.1501987746336557 1.2005454986804265 1.2959236940162944 1.1490281978387327 0.922635828058982 1.0405159345002135 0.9472439087998108 0.8549531827502698 1.0 20.639743076666264 2.7431853267479767 24.469875958894004 0.9569405663034558 1.13821177994371 0.31739356280580244 0.12331026261500638 354.2228427746082 1874236.1606444344 0.03927455850554864 0.04039609697053325 553.586291033271 -2.7431853267479767 0.18127121364025411 EAAFDDAVEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EAAFDDAVEER 11 0 Q09028-3;Q09028;E9PNS2;E9PIC4;E9PNS6 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 ; 172.27 3.1523e-05 506130000.0 830530.0 941870.0 784270.0 789740.0 791180.0 885470.0 775830.0 866030.0 923660.0 877790.0 False True 826058.518760557 973219.5735775615 894688.399002956 889721.003026133 891932.0833087391 824259.543072176 738300.1389415885 930657.5562112342 696036.3694098936 821768.6906861719 1.005220237912451 1.1842986774842068 1.0887350773316717 1.08269031554758 1.0853809513769395 1.0030310869886323 0.8984281675724495 1.1325054930410414 0.8469979171738795 1.0 19.64837283943707 2.733381800722162 4.280550184452975 0.9891305169009403 1.0951119404620968 0.3229370528495902 0.08086303005776588 0.2731601254326422 12.668271150188822 0.025428645756504272 0.025299269885938648 541.2299245911059 -2.733381800722162 0.10598142356115647 EAAFS(ph)PGQQDWSR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAAFSPGQQDWSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EAAFS(1)PGQQDWSR;EAAFS(1)PGQQDWSR;EAAFS(0.976)PGQQDWS(0.024)R 208.01 5.1723e-08 856340000.0 992480.0 846000.0 894460.0 905390.0 941250.0 1038960.0 1164560.0 751070.0 924750.0 909420.0 True False 987136.5979548933 874158.5985822005 1020392.1932143071 1020012.281168273 1061112.608274162 967139.1406487705 1108225.7837487787 807118.6572561831 696857.7535151439 851380.0370063664 1.1594547147545011 1.026754869254309 1.1985155263943272 1.1980692955344048 1.2463442436414882 1.1359664293391676 1.3016816645660811 0.9480121945238278 0.8185037506463555 1.0 19.699443736920106 1.6106889455629596 5.932001792156977 0.9019589489062255 1.176563770295233 0.6917204017910308 0.07927108539804376 0.07197771198848518 5.380615672729423 0.04237050618969549 0.02016957782909283 40.80270407261686 -1.6106889455629596 0.27460482138900744 EAAHLLNDALAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAAHLLNDALAIR 13 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 0 ; 201.04 1.0501e-07 680050000.0 151140.0 205622.0 171626.0 192889.0 182022.0 201230.0 182074.0 164217.0 210744.0 193597.0 False True 150326.2790332328 212466.0039688763 195789.44900006583 217308.72762264547 205201.42277108037 187319.44374446786 173266.3850297755 176471.70641702978 158808.96502492082 181241.4737132696 0.8294253845621133 1.1722813747641723 1.0802684671931748 1.1990011070337883 1.1321990412399552 1.0335352053074442 0.9559974407617597 0.9736828045009954 0.8762286124210301 1.0 17.467553601311046 2.3923518890135655 3.120350055539249 0.9511781832813739 1.093640616908092 0.27755458128726374 0.09875323120257457 0.3083399118420452 6.07475247234881 0.03614727628452503 0.029501265893929946 246.80382661616846 -2.3923518890135655 0.14246243362671795 EAALPPVS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 10 EAALPPVSPLK 11 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK 178.15 8.045e-06 25652484000.0 32526550.0 27273310.0 22839120.0 21478960.0 20809340.0 24176720.0 21087420.0 20226440.0 28883640.0 21466540.0 True False 32351430.668839443 28181085.636285987 26054669.57481023 24198194.133712597 23459286.102378584 22505440.25227726 20067340.932832714 21735839.66058119 21765653.94294692 20096527.038770493 1.609802062138728 1.4022863543496173 1.2964762281833675 1.2040983044995344 1.1673303579827803 1.1198671396734101 0.9985477039947513 1.0815719362180396 1.0830554901827725 1.0 24.260442869254856 7.999999999999602 0.34042907887391044 1.0160468907883178 7.780626531923969 0.9713647253975867 0.030917591133901554 8.69663820008618 0.12358299533864887 0.027060130975148547 37.39718930864078 99999999.99990837 -7.999999999999602 6.764579641135651 EAALPPVS(ph)PLKAALSEEELEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAALPPVSPLKAALSEEELEK 21 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 EAALPPVS(1)PLKAALSEEELEK;EAALPPVS(1)PLKAALSEEELEK;EAALPPVS(0.999)PLKAALS(0.001)EEELEK 167.23 7.4955e-12 276106000.0 563140.0 538690.0 493363.0 522040.0 498778.0 675240.0 631780.0 556300.0 1085510.0 583740.0 True False 560108.1168107361 556619.9710050185 562824.2220119298 588130.2104740322 562294.4218111759 628562.2481439867 601218.387766027 597813.9308341622 818000.6055887805 546485.213435042 1.0249282195396738 1.0185453463713545 1.0298983543839837 1.0762051671576296 1.0289288858828622 1.1501907694684603 1.1001549044427914 1.0939251715091856 1.496839412080474 1.0 19.059822935032003 2.0493497590770176 1.1246529451949032 1.2116878184443094 1.0388737692708148 0.23396089157569022 0.121529131673433 0.7118897341772569 1.6697980094959288 0.08708523306077455 0.04203580790251512 112.03397859327316 -2.0493497590770176 -0.17281404917349463 EAALSTALSEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAALSTALSEKR 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 221.09 4.4909e-11 2360300000.0 853880.0 1078450.0 987630.0 1011100.0 988340.0 1121110.0 1146670.0 948230.0 1605830.0 1231320.0 False True 849282.8049549868 1114345.5563132095 1126679.7193661493 1139105.1563295815 1114199.240649865 1043610.30450907 1091201.1913952169 1018991.7376143768 1210094.7135195713 1152736.1034139101 0.7367538870690137 0.9666961527560347 0.9773960545084057 0.9881751364913794 0.9665692237365383 0.9053332340492709 0.9466183874726807 0.8839765967219732 1.0497586654359048 1.0 20.136630843049133 4.740183514259433 24.855348230795524 0.9564974464406528 0.7367538084871662 0.6957759346032216 0.04495604151387943 76.22578669716135 1167317.5033009385 0.010795608284971203 0.0690418246366409 54977.31353779686 -4.740183514259433 -0.21974363795348661 EAALVQQEEEKAEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAALVQQEEEKAEQR 15 1 A0A499FI31;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 ;; 249.19 1.5116e-18 1347450000.0 654150.0 681320.0 576380.0 573630.0 596000.0 745660.0 686430.0 675950.0 1025830.0 772580.0 False True 650628.1290828969 703997.3243333632 657529.2940152291 646251.4991843913 671897.0672312346 694114.2792948366 653224.7584827527 726392.8214045521 773027.9419177525 723273.2829609846 0.8995605733137436 0.9733489967323165 0.9091021464575487 0.8935094305415564 0.9289670765669339 0.959684666428193 0.9031506815909713 1.0043130840265473 1.0687909537499836 1.0 19.46418133527636 1.5988111000811827 4.316944079979078 1.0350910570679381 0.9258338888008948 0.7189532294761192 0.02907650029113399 0.0810999525129171 3.4007921361508058 0.01629008739938955 0.007279946251636459 39.70188253396027 -1.5988111000811827 -0.10925716826704335 EAARS(ph)PDKPGGS(ph)PSASR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 EAARS(1)PDKPGGS(0.985)PS(0.013)AS(0.002)R;EAARS(1)PDKPGGS(0.836)PS(0.15)AS(0.013)R;EAARS(1)PDKPGGS(0.529)PS(0.377)AS(0.094)R;EAARS(1)PDKPGGS(0.362)PS(0.277)AS(0.362)R 122.44 3.052e-05 1066740000.0 956160.0 703330.0 628678.0 546514.0 584645.0 1004920.0 924590.0 821320.0 1434260.0 1016640.0 True False 951012.1407993638 726739.9138780372 717190.3978328656 615702.6163646571 659096.0752875928 935452.2457272299 879864.0494232011 882611.0689784538 1080805.8410993582 951757.1648107058 0.9992172120800475 0.7635770349284189 0.7535434713281165 0.6469114592766041 0.6925044535059317 0.9828686142996163 0.924462753688013 0.9273490146554301 1.135589918374104 1.0 19.860233999847377 2.7271740797283415 24.152519867233117 0.9786598867999697 0.7628496047067461 0.5387965066163051 0.10247788341470952 392.62655565535954 832816.7456370041 0.03408855159834109 0.03241851575893592 533.5487167709279 -2.7271740797283415 -0.21581028209322362 EAARS(ph)PDKPGGSPSASR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 EAARS(1)PDKPGGSPSASR;EAARS(0.999)PDKPGGS(0.001)PS(0.001)ASR 105.38 0.00041982 217266000.0 186528.0 182097.0 163919.0 158787.0 176597.0 234104.0 219700.0 197703.0 280431.0 213899.0 True False 185523.75397320907 188157.98856503877 186997.37039051077 178889.41791920227 199085.5811775744 217920.94150154002 209072.27166449698 212456.60177549225 211322.53763287974 200247.78269185268 0.9264709525333352 0.9396258277405346 0.9338299174991014 0.8933403182520262 0.9941961828557837 1.0882564519422586 1.0440678486124546 1.0609685606478194 1.0553052562787635 1.0 17.611426742453176 3.0157756175292847 4.564047513990643 1.0530575144563736 0.9259329540428947 0.8629199079984384 0.023689266902153405 0.06112392243476628 3.221397223376078 0.006700703281246152 0.007786434875165306 1036.9925051182086 -3.0157756175292847 -0.12712456041347897 EAARSPDKPGGS(ph)PSASR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 EAARS(0.002)PDKPGGS(0.445)PS(0.108)AS(0.445)R;EAARSPDKPGGS(0.396)PS(0.208)AS(0.396)R;EAARSPDKPGGS(0.97)PS(0.017)AS(0.013)R 151.96 1.8149e-07 1442880000.0 765830.0 682130.0 610900.0 585570.0 600220.0 759230.0 803250.0 710220.0 1096740.0 754910.0 True False 761706.8563717111 704834.2846937081 696909.4099620116 659703.1019601559 676654.4592173347 706746.2171351792 764393.7287870162 763220.2228240859 826463.1225630712 706730.9974890333 1.0777889452677232 0.9973162167754576 0.9861027922053552 0.9334571489067774 0.9574427351020991 1.000021535274666 1.081590777117255 1.079930306631172 1.169416829740648 1.0 19.430801661977668 2.251246962187142 4.015566303631214 1.089583429998268 0.9865942191850046 0.4244081527408864 0.051582155372764824 0.19039656325468585 6.870157372745279 0.019447464836844827 0.015019030220922977 178.33926079534174 -2.251246962187142 -0.10298921081326351 EAARSPDKPGGSPS(ph)ASR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 EAARS(0.001)PDKPGGS(0.058)PS(0.883)AS(0.058)R 135.0 1.1899e-05 564670000.0 404720.0 396520.0 372830.0 359650.0 329670.0 423380.0 407830.0 384600.0 570390.0 445070.0 True False 402541.03248861927 409717.92849859816 425321.22330354695 405181.6531242544 371651.5203928213 394112.7371293186 388101.7048381058 413300.8049592286 429825.02733441873 416665.2515564022 0.9661017591099242 0.9833263680332037 1.0207744027485168 0.9724392701593132 0.891966678297656 0.9458737815480378 0.9314472550528254 0.9919253007429679 1.0315835691333985 1.0 18.668529263707914 1.516424074547069 5.188481553421361 1.0149787327759674 0.9596360457559072 0.3377109667489173 0.03253417469878205 0.19149621963397048 11.334046636331664 0.021246186728886125 0.009253954253522666 32.84158240479285 -1.516424074547069 -0.05534268702006018 EAASGT(ph)TPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAASGTTPQK 10 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 EAAS(0.01)GT(0.646)T(0.343)PQK;EAAS(0.004)GT(0.576)T(0.421)PQK 157.99 9.1478e-05 402695000.0 1298590.0 1038050.0 908930.0 802390.0 799620.0 966900.0 1237410.0 1134730.0 1778160.0 1493980.0 True False 1291598.5357269137 1072600.8667355236 1036899.4434388129 903972.4917290992 901446.8672809395 900060.4788377772 1177551.750934753 1219409.3146421865 1339956.2941232638 1398632.9173393704 0.923472141771074 0.7668923371086819 0.7413663947015592 0.6463257660549937 0.6445199852694504 0.6435287398711942 0.8419305282581354 0.8718580118662428 0.9580471598453957 1.0 20.415585934381948 1.669701871763922 1.6543197765991324 0.9780883607561459 0.7251490476491199 0.5865797662512722 0.0822933860984841 0.2598510117920163 1.42316915242899 0.0693735115484527 0.02596985314897466 46.74141673691216 -1.669701871763922 -0.252939313107026 EAASGTT(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAASGTTPQK 10 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 EAASGT(0.151)T(0.848)PQK;EAASGT(0.136)T(0.864)PQK;EAAS(0.001)GT(0.122)T(0.877)PQK 228.28 2.4215e-08 3422140000.0 6049000.0 4601700.0 3671170.0 3513640.0 3584830.0 4149200.0 5629500.0 5065100.0 8017100.0 6571100.0 True False 6016432.856107083 4754864.80271361 4188038.825618326 3958466.4637383698 4041336.8515479043 3862375.5701662037 5357179.578221602 5443083.482056647 6041393.128636134 6151726.772198255 0.9780071643131794 0.7729317277552802 0.6807907731769717 0.6434724119458662 0.656943489397494 0.6278522621683382 0.8708415988877332 0.8848057925224819 0.9820646059801036 1.0 22.552559997014633 1.7953788971441134 1.852153571607144 0.9753663282526295 0.7221724175393526 0.5148099896809935 0.09988579627255907 0.27985811636784913 1.8669023620139718 0.07267189603880941 0.03103138905921373 62.42792459699867 -1.7953788971441134 -0.2531939107132769 EAASS(ph)PAGEPLR ddPTM_BT-474_Trastuzumab_2h_R1 6 EAASSPAGEPLR 12 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 EAAS(0.227)S(0.773)PAGEPLR;EAAS(0.023)S(0.977)PAGEPLR;EAAS(0.028)S(0.972)PAGEPLR;EAAS(0.029)S(0.971)PAGEPLR;EAAS(0.024)S(0.976)PAGEPLR;EAAS(0.008)S(0.992)PAGEPLR 220.69 3.0373e-11 3817270000.0 2734560.0 3216830.0 2869180.0 3050200.0 3092230.0 3018480.0 3089820.0 2825350.0 3545660.0 3234770.0 True False 2719837.4327981765 3323900.2419352047 3273135.6046403754 3436355.0072559505 3486007.161416852 2809819.582337628 2940353.602341358 3036191.9638365987 2671879.6024098475 3028324.209174072 0.8981328434249679 1.0976038271812867 1.080840550270234 1.1347381488566453 1.1511340664438323 0.9278463560227465 0.9709507302533151 1.0025980555974463 0.8822964180372751 1.0 21.530088236315304 2.726265343480279 24.926097523899255 0.9618886593748384 1.0778072702525543 0.3898860146931953 0.072102433495047 782.23973431769 1585825.3286503053 0.023352010863343754 0.022173155672610714 532.4334639478614 -2.726265343480279 0.11591861087771593 EAASSSSGTQPAPPAPAS(ph)PWDSKK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAASSSSGTQPAPPAPASPWDSKK 24 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 EAASSSSGTQPAPPAPAS(0.98)PWDS(0.02)KK;EAASSSSGTQPAPPAPAS(0.991)PWDS(0.009)KK;EAASSSSGTQPAPPAPAS(0.988)PWDS(0.012)KK 189.93 7.9862e-18 3594810000.0 4063190.0 2793180.0 2652830.0 2361860.0 2258630.0 4131840.0 3860510.0 3545390.0 6062200.0 4280550.0 True False 4041314.236502852 2886149.3077870305 3026325.40518828 2660871.2338330355 2546253.1425511464 3846215.626105162 3673762.382719655 3809965.004925636 4568252.039318209 4007361.6342367698 1.008472557598997 0.7202118429066405 0.7551914904142824 0.6639957849324015 0.6353939012634428 0.9597875053863715 0.9167533948852982 0.9507414984401005 1.1399650084707826 1.0 21.934221277340523 2.636423579597218 6.507540133490146 0.9831270565480884 0.7498624558336607 0.54037620466357 0.10901448223953437 0.2019081666587455 11.015791433833485 0.03606320648921042 0.03394141119010536 432.93587969795516 -2.636423579597218 -0.23326460071442767 EAATQEDPEQLPELEAHGVS(ph)ES(ph)EGEERPVAEEEILLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 EAATQEDPEQLPELEAHGVS(1)ES(1)EGEERPVAEEEILLR 210.67 1.0702e-30 93648000.0 72700.0 67472.0 64581.0 66932.0 74842.0 85247.0 67872.0 65304.0 91867.0 71223.0 True False 72308.59127772936 69717.76473231465 73673.44345188509 75405.58433730734 84372.68507671152 79354.07553985315 64588.772063781325 70177.31608699284 69227.60880473188 66677.48716292196 1.0844528543951901 1.0455967628468659 1.1049223146617535 1.1309002115370494 1.2653848947629436 1.1901179680925407 0.9686743578977864 1.0524889145195182 1.038245617078803 1.0 16.024912114859056 2.238276624295704 24.99999972632697 1.0209847221990191 1.1368604192823686 0.49750793480453925 0.059961065478278994 7.696698417289999 677437.0941652023 0.024473937648750516 0.019232468469017237 173.09185184131422 -2.238276624295704 0.11587569708334944 EAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 EAATQEDPEQLPELEAHGVS(0.99)ES(0.01)EGEERPVAEEEILLR 217.44 2.7635e-39 224520000.0 67854.0 85932.0 74461.0 82266.0 74664.0 79180.0 81481.0 80478.0 89350.0 92740.0 True False 67488.6816032881 88792.19467300894 84944.46157338562 92680.86716507698 84172.01783180035 73706.47296967122 77539.45274235267 86483.67701900355 67330.88972865987 86821.25380129143 0.7773290369400797 1.0227011334831495 0.978383262787229 1.06749054070558 0.9694863198410563 0.8489450421709398 0.8930929852708406 0.9961118186215037 0.7755116032159668 1.0 16.40576063650841 2.9478251385954897 22.540647893363165 0.9094666177315208 0.9734858045906799 0.08727764695197981 0.09345538433426115 275.89329783426666 119190.88199658255 0.027877772020512195 0.02956948018137211 886.7988854180726 -2.9478251385954897 0.06401918685915908 EAAVGVPPPAQPAPGEPTPPAPPS(ph)PDWTSSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 EAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSR 32 0 Q8IV56 Q8IV56 PRR15 Proline-rich protein 15 1 EAAVGVPPPAQPAPGEPTPPAPPS(0.98)PDWT(0.013)S(0.002)S(0.003)S(0.003)R;EAAVGVPPPAQPAPGEPT(0.001)PPAPPS(0.907)PDWT(0.05)S(0.012)S(0.015)S(0.015)R;EAAVGVPPPAQPAPGEPT(0.035)PPAPPS(0.894)PDWT(0.038)S(0.009)S(0.012)S(0.012)R;EAAVGVPPPAQPAPGEPT(0.019)PPAPPS(0.902)PDWT(0.049)S(0.008)S(0.01)S(0.01)R;EAAVGVPPPAQPAPGEPTPPAPPS(0.984)PDWT(0.01)S(0.002)S(0.002)S(0.002)R;EAAVGVPPPAQPAPGEPT(0.001)PPAPPS(0.984)PDWT(0.008)S(0.002)S(0.002)S(0.002)R 141.25 4.0714e-10 4543580000.0 2041110.0 2537770.0 2229690.0 2244970.0 2374950.0 2239340.0 2144150.0 2021430.0 2133070.0 2131670.0 True False 2030120.8905486406 2622238.1403356385 2543610.9711870966 2529182.9718180383 2677385.805068496 2084539.6966393513 2040429.2730515783 2172279.3712135553 1607403.4801736148 1995624.9955854951 1.0172857601199892 1.3139934337043628 1.2745936620426164 1.2673638471219904 1.3416277161245815 1.0445548142815126 1.0224512508939276 1.0885208273191787 0.8054636936946261 1.0 20.92840921392817 2.615725371694088 5.237951082847169 1.0028318259713473 1.2493286074609715 0.5791239346462137 0.10707145719263464 0.1714738290453217 6.646244277734894 0.03460606471484549 0.03247466476916471 412.7863918849991 -2.615725371694088 0.24649678148962417 EAAVSASDILQESAIHS(ph)PGTVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAAVSASDILQESAIHSPGTVEK 23 0 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 EAAVSASDILQESAIHS(1)PGTVEK;EAAVSASDILQESAIHS(1)PGTVEK;EAAVSASDILQESAIHS(1)PGTVEK;EAAVSASDILQESAIHS(1)PGTVEK 327.42 1.2398999999999994e-86 3711510000.0 1822490.0 1631940.0 1618350.0 1648570.0 1640330.0 2052560.0 2025190.0 2000690.0 2602110.0 2145520.0 True False 1812677.9163376729 1686258.136371439 1846199.613049631 1857278.7929683079 1849216.3025023697 1910671.358406524 1927223.8227229093 2149991.647097968 1960854.8569876095 2008591.076727913 0.9024623963234012 0.8395228655095047 0.9191515557547806 0.9246674519703135 0.9206534490409207 0.9512495502663963 0.9594903836088157 1.0703978883548577 0.9762339779891545 1.0 20.93775244916146 2.565910526447925 0.8897127956672894 1.0235818111257613 0.885550450414286 0.6876553342011569 0.0328572176266122 0.30814686063232943 0.5020872882336599 0.022180324856639774 0.01728664928411789 368.0531393513587 -2.565910526447925 -0.13803136071147526 EAAVSHAGSMHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAAVSHAGSMHR 12 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 ;; 182.1 1.0012e-05 275627000.0 204700.0 360430.0 365010.0 381390.0 367850.0 374490.0 363800.0 205944.0 358980.0 342230.0 False True 203597.9179443081 372426.6946654644 416400.23527620477 429673.93489520275 414693.5170822311 348602.3877546374 346201.60414904036 221312.5870424424 270514.1890855543 320388.5884021561 0.6354718155215605 1.1624218469291714 1.299672492559359 1.3411024938125145 1.294345467016766 1.0880611868643304 1.0805678375613161 0.6907630142077591 0.8443315363841899 1.0 18.289463237199627 1.9022327006310544 5.069347804841651 0.8199179176948193 1.156486480304938 0.29454450742517224 0.20001376041814023 0.25233821803225975 9.917459265702842 0.09348194861243463 0.05536290289922066 79.84223777695283 -1.9022327006310544 0.3365685626101187 EACAVPEPQESGS(ph)EEHLPLSQFTTVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EACAVPEPQESGSEEHLPLSQFTTVDR 27 0 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 1 EACAVPEPQES(0.17)GS(0.83)EEHLPLSQFTTVDR;EACAVPEPQES(0.003)GS(0.997)EEHLPLSQFTTVDR 254.91 4.9021e-53 242480000.0 177060.0 188658.0 190673.0 185001.0 184700.0 204794.0 185799.0 184567.0 202191.0 211460.0 True False 176106.7286332152 194937.36748383072 217518.10104057365 208422.10763142037 208220.4501973307 190637.0728132212 176811.19254889362 198340.32675223582 152363.7372705929 197964.44175998587 0.8895876808357777 0.9847090000141278 1.0987735934127747 1.0528259811633924 1.0518073263368142 0.9629864389704468 0.8931462184671596 1.0018987500427257 0.7696520441550824 1.0 17.59488179209794 2.516754185833191 5.061072336942867 0.9247026508933498 1.0199922949063982 0.254356970311408 0.0795304443416799 0.29486293807725167 18.52665524578257 0.02673766627410505 0.024344707258713325 328.66555087656457 -2.516754185833191 0.0952896440130484 EACSNENVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EACSNENVHK 10 0 P51116;I3L1Z2 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 99.283 0.0048011 159470000.0 169830.0 191810.0 151240.0 158120.0 147160.0 174910.0 179070.0 163120.0 203580.0 172650.0 False True 168915.65414988683 198194.27989840653 172533.27739835414 178137.97578759096 165899.95371434322 162818.88339385213 170407.69998616996 175292.84270657663 153410.43683223915 161631.32918689825 1.0450675311502606 1.2262120276770703 1.0674494744694558 1.1021252914501847 1.0264096357365784 1.007347302116044 1.0542986984232703 1.0845226825047094 0.9491380019206977 1.0 17.302347338874632 3.509097487390239 1.732393243255671 1.029991917692438 1.1289761737587518 0.3645699711947472 0.05634604565003784 0.394919612818433 2.3676206108889772 0.016763109658904356 0.029909743337655476 3229.2189128557898 -3.509097487390239 0.09898425606631389 EADDIVNWLK ddPTM_BT-474_Trastuzumab_2h_R1 4 EADDIVNWLK 10 0 P07237;I3L312;I3L3P5 P07237 P4HB Protein disulfide-isomerase 0 ;;; 179.0 5.0114e-06 2364880000.0 2465450.0 2875890.0 2540470.0 2360640.0 2481420.0 2929960.0 2874330.0 2641820.0 3449680.0 2675650.0 False True 2452176.2911372487 2971612.260137785 2898146.093838913 2659496.7819581255 2797414.128471359 2727418.7615839643 2735287.676893098 2838966.023290145 2599552.5873437393 2504887.7262607864 0.9789565677651255 1.1863255302758458 1.1569964048509151 1.0617229483287598 1.1167822410337116 1.0888387263789123 1.0919801507336397 1.1333705672820953 1.0377920575403454 1.0 21.25631450991161 1.062442340993333 4.719021244078417 1.0006605183212778 1.1057933734738339 0.28773007739857914 0.05344577077306839 0.20225510811466563 8.440783168294725 0.04786028377286922 0.012152252297210153 11.546286805026746 -1.062442340993333 0.1051328551525561 EADGILKPLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EADGILKPLPK 11 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 80.979 0.015819999999999997 0.0 1561200.0 1451300.0 1392800.0 1297800.0 1336700.0 1681400.0 1594800.0 1520500.0 2302900.0 1641300.0 False True 1552794.6726656274 1499605.643170624 1588894.1335653774 1462101.3469335665 1506920.821758377 1565168.7755898617 1517653.4312723703 1633967.4309425536 1735381.1522790217 1536550.8288123726 1.0105716280572443 0.9759557673270697 1.0340654560665994 0.951547660850016 0.9807165461119842 1.0186247966815445 0.987701417235505 1.0633995311469624 1.1294004205642376 1.0 20.551264061124982 1.6760817126023406 4.718789573285585 1.0742674040373457 0.993753458166079 0.42898425618862956 0.03664894815463387 0.127287322374084 6.531452413979871 0.01859889591265439 0.008936482225019908 47.43312223888621 -1.6760817126023406 -0.0805139458712667 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLER ddPTM_BT-474_Trastuzumab_2h_R1 2 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLER 32 0 P23258;K7EIS0;Q9NRH3 P23258 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma chain;Tubulin gamma-2 chain 0 ; 317.19 3.062699999999998e-104 172393000.0 55026.0 78215.0 69719.0 67149.0 58310.0 86379.0 76979.0 69546.0 77983.0 77927.0 False True 54729.74612996332 80818.33899303399 79534.82919158862 75650.056515058 65735.43286955255 80407.82304429456 73255.23168166287 74735.87566743241 58765.13456866343 72953.6321433387 0.7501990582515584 1.1078041849135458 1.0902106838946584 1.0369607967759764 0.9010577121149513 1.1021771045793844 1.0041341264233643 1.0244298120838173 0.8055134863361179 1.0 16.154692186955625 1.2743214852354516 24.960557638102976 0.9027563216394703 1.0103743178228788 0.10969594434447116 0.11126155263855844 283.61253696510187 197957.36632003647 0.06948287383886594 0.025371589997742718 18.80708490674858 -1.2743214852354516 0.1076179961834085 EADIDGDGQVNYEEFVQMMTAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EADIDGDGQVNYEEFVQMMTAK 22 0 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;M0QZ52 P0DP25 CALM2;CALM3 0 ;; 237.61 1.5796e-30 161903000.0 252308.0 244788.0 218258.0 211310.0 187178.0 261694.0 237091.0 249732.0 279581.0 250793.0 False True 250949.6017620538 252935.62060252888 248986.82926745564 238061.82433389733 211014.0088090743 243603.70974141383 225622.0025544254 268368.2699534011 210682.00874346303 234787.17602531027 1.0688386223232278 1.0772974269057276 1.0604788280285573 1.013947304806094 0.8987458871532523 1.0375511723653643 0.9609639094177066 1.1430278028663319 0.8973318403077999 1.0 17.840994085653342 3.747003226511996 4.281824372944341 1.0031077125320946 1.071106300574799 0.20435340661617885 0.06689789460040581 0.3850556708564492 17.85385940314866 0.018233468426537818 0.03199669583113123 5584.743438051505 -3.747003226511996 0.06799858804270431 EADKEINK ddPTM_BT-474_Trastuzumab_2h_R1 4 EADKEINK 8 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 0 ;;; 135.71 0.00074973 2247490000.0 1997280.0 1604630.0 1401510.0 1321100.0 1353100.0 1811130.0 1971620.0 1891380.0 3005640.0 2077890.0 False True 1986526.8663986705 1658039.139530683 1598830.4258567006 1488351.1245445658 1525409.26454796 1685930.8460414351 1876245.2082801799 2032524.3798330342 2264940.295512579 1945277.2812288683 1.0212049899352877 0.8523407719455133 0.821903613065737 0.7651100122879892 0.7841603247349551 0.8666789368847205 0.96451299071098 1.0448507261386666 1.164327737422489 1.0 20.891544381986552 1.9702627131324946 1.9692482292843965 1.0821555018273945 0.8419657530710895 0.6299483428446092 0.07516385245678592 0.2107793499973872 1.5160802642387843 0.0460809829850096 0.023190396887637833 93.38190151612231 -1.9702627131324946 -0.24018974875630505 EADKSHPEQR ddPTM_BT-474_Trastuzumab_2h_R1 6 EADKSHPEQR 10 1 O14745 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ;;;;; 161.19 4.2954e-06 3779980000.0 6272740.0 6371170.0 5920600.0 5671350.0 5783760.0 6064690.0 7543080.0 6700090.0 9777300.0 7709830.0 False True 6238968.264806938 6583230.541996411 6754169.017222259 6389342.328503387 6520287.552968674 5645452.255044656 7178192.403036115 7200084.738167637 7367815.424107734 7217782.048682448 0.8643885646208748 0.9120849725849134 0.9357679369738218 0.8852223973249114 0.9033644281568329 0.7821588705459998 0.9945149846061699 0.9975480957452793 1.0207866314628706 1.0 22.78312414896381 2.0931565709060007 11.70464704990648 1.0033843517608267 0.8857280205453838 0.7056312209845929 0.038782804128293845 0.2634629492071689 31.32137007415899 0.014599633795146857 0.010782081998082015 123.92432753074993 -2.0931565709060007 -0.11765633121544294 EADLDHYSAIIMDEAHER ddPTM_BT-474_Trastuzumab_2h_R1 4 EADLDHYSAIIMDEAHER 18 0 Q92620 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 ;;; 222.3 3.3375999999999994e-19 326322000.0 168482.0 342458.0 351294.0 393693.0 371252.0 343949.0 346785.0 300090.0 326635.0 353845.0 False True 167574.9116321099 353856.5075097675 400753.1416978143 443534.49343374715 418528.7416169973 320172.6151988571 330009.68470265216 322484.2396261437 246140.1809347598 331262.30915805465 0.5058677277774911 1.0682063661547818 1.2097758501906826 1.3389223016679639 1.2634360446280213 0.9665229226126467 0.996218632724664 0.973501152140666 0.7430370861096646 1.0 18.337614538151236 1.95291564813737 1.5819255154830856 0.8903652001440093 1.0903236841213029 0.08543978304877764 0.22316033545888717 0.9101240192732651 4.2406145506109425 0.15657959869484692 0.07305183456097444 89.72545062181673 -1.95291564813737 0.19995848397729354 EADLLQESLEHIEMYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EADLLQESLEHIEMYEK 17 0 Q6N069;Q6N069-5;Q6N069-4;Q6N069-3;Q6N069-2 Q6N069 NAA16 N-alpha-acetyltransferase 16, NatA auxiliary subunit 0 164.53 2.5824e-09 21890000.0 41762.0 42016.0 40092.0 34281.0 41194.0 46463.0 51210.0 43277.0 57696.0 51532.0 False True 41537.1580321944 43414.477160791634 45736.60511408895 38620.97108508991 46439.81172403271 43251.1221721374 48732.77665880249 46506.549496153224 43477.59388679081 48243.183641235155 0.8609953758667602 0.8999090417342139 0.9480428458912121 0.8005477286138138 0.9626191353660781 0.8965229677580635 1.01014843923254 0.9640024970574793 0.901217345234011 1.0 15.558037495574103 2.730515471907098 1.7776626536535325 0.9640995980432915 0.8870215132255973 0.3213920334171637 0.0507342777243068 0.42364473704218886 2.6609454370685195 0.01876619842755388 0.018243968089372706 537.6695874658511 -2.730515471907098 -0.07707808481769418 EADVDQDGR ddPTM_BT-474_Trastuzumab_2h_R1 8 EADVDQDGR 9 0 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 0 ;;;;;;; 200.86 5.2165e-05 6885042000.0 7463687.0 8847647.0 8054267.0 8105297.0 7641967.0 7652784.0 8185043.0 7358162.0 8353503.0 7453529.0 False True 7423503.338485585 9142135.581879443 9188237.784656243 9131426.769145176 8615126.199962895 7123765.054795821 7789101.200189313 7907265.412429554 6294894.116855389 6977838.397932768 1.0638686245134092 1.3101672839812202 1.3167742301653649 1.308632594852071 1.2346411178732923 1.0209128742371398 1.1162627673488235 1.1331969818578969 0.9021266698753434 1.0 22.73434875539176 2.796681187510408 5.594523187611597 1.0569855100692054 1.25947928424239 0.5639511399586898 0.09206161693287902 0.17209607930051227 11.576010494677373 0.028652780848910448 0.030214979822054403 626.1540406894208 -2.796681187510408 0.2024937741731847 EAEAAIYHLQLFEELR ddPTM_BT-474_Trastuzumab_2h_R1 24 EAEAAIYHLQLFEELR 16 0 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;;;;;;;;;;;;;;;; 260.56 8.5877e-27 17774770000.0 8897367.8 9545943.8 8924460.3 8320449.899999999 8524719.8 10021161.899999999 10063898.0 8581104.899999999 10502945.8 9552288.0 False True 8849465.360355295 9863674.768738119 10180946.737440495 9373818.004225045 9610292.336557109 9328422.565130709 9577068.805916205 9221470.521605758 7914635.539853279 8942652.801714806 0.989579440975094 1.1029920301553808 1.1384705370075687 1.048214462986594 1.0746578839239156 1.0431381796844366 1.0709427077477218 1.0311784127230665 0.885043366363905 1.0 23.092271433860617 1.428873890585087 4.631891751531718 0.9432021389766101 1.068411094346471 0.5405903998801 0.04501468677871394 0.14163366648318335 5.419534812521352 0.030003282890606046 0.011063792857810653 26.845647948272013 -1.428873890585087 0.12520895536986099 EAEAAIYHLQLFEELRR ddPTM_BT-474_Trastuzumab_2h_R1 31 EAEAAIYHLQLFEELRR 17 1 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 270.17 2.8414e-29 27044070400.0 9363785.2 12142454.7 11119252.100000001 11842148.200000001 10995693.0 12623863.9 12855954.9 10732376.799999999 13609022.0 12953391.0 False True 9313371.620897537 12546608.964420628 12684746.14540817 13341362.947917195 12395929.326971501 11751205.901972204 12234063.246970057 11533281.254721144 10255260.879651982 12126694.496424017 0.7680057928105563 1.0346272818302165 1.0460184470837222 1.100164843094824 1.0222018317214865 0.9690361957611335 1.0088539173290547 0.9510655404176412 0.8456765264991303 1.0 23.531683017348954 1.5652714132758907 4.42393289834028 0.9158942210618249 1.0003605677650609 0.08513058774363569 0.08995162143290829 0.33387598312491734 14.479914202554465 0.052715385344266945 0.023070009880816 36.751190610503905 -1.5652714132758907 0.08446634670323594 EAEAAMFHR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAEAAMFHR 9 0 P14618-2;H3BTN5;H3BR70 P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;; 144.09 0.00010039 2044470000.0 2099110.0 2501480.0 2369770.0 2303730.0 2081220.0 2520030.0 2587580.0 2098020.0 2843810.0 2553450.0 False True 2087808.6249930465 2584740.2496234053 2703413.017589906 2595381.9817932392 2346251.030642604 2345826.2576125357 2462408.8698844765 2254584.905929693 2142991.130601679 2390486.6348814685 0.8733822622256868 1.0812611172584818 1.13090488695577 1.085712818437042 0.9814951468067681 0.9813174536860997 1.0300868592836012 0.9431489275159599 0.8964664764619938 1.0 21.188872908980027 2.3120041999157035 1.0652953280708877 0.946773989216939 1.0438962515181738 0.16962510698084665 0.07213541954554625 0.826844312229784 1.8252335749923285 0.04975560495637424 0.0300039710316268 205.11820150202658 -2.3120041999157035 0.09712226230123477 EAEALKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEALKR 7 1 Q9BUQ8;F8VVA2;H0YIL9 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 78.49600000000002 0.056405 302550000.0 125010.0 151330.0 135590.0 130610.0 134120.0 147720.0 161770.0 136970.0 196190.0 157070.0 False True 124336.96004991671 156366.92756908314 154679.8934305927 147145.21260825492 151199.3870084787 137508.46409547667 153944.56707858783 147191.3969195671 147841.6033113124 147045.65812560756 0.8455670275126866 1.063390307216778 1.0519174479702347 1.0006770310930386 1.0282478852882755 0.9351412741341594 1.04691678109317 1.0009911125280222 1.005412911852351 1.0 17.16590466027258 4.748998176194881 24.916300505385923 1.0143212011456868 0.8455669293718114 0.6822612479378956 0.03463445105064396 813.1035701590998 1940982.6201887296 0.008124931758607007 0.11416212727872449 56104.56199352491 -4.748998176194881 -0.16875427177387536 EAEALLQSMGLTPESPIVPPPMS(ph)PSSK ddPTM_BT-474_Trastuzumab_2h_R1 12 EAEALLQSMGLTPESPIVPPPMSPSSK 27 0 Q13409-2;Q13409-3;Q13409-6;E7EQL5;E7EV09;E7EQU2;E7ETL8;E9PGG1 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 EAEALLQSMGLTPESPIVPPPMS(0.671)PS(0.146)S(0.183)K;EAEALLQSMGLTPESPIVPPPMS(0.677)PS(0.141)S(0.182)K;EAEALLQSMGLTPESPIVPPPMS(0.949)PS(0.039)S(0.012)K;EAEALLQSMGLTPESPIVPPPMS(0.903)PS(0.075)S(0.022)K;EAEALLQSMGLTPESPIVPPPMS(0.812)PS(0.163)S(0.025)K;EAEALLQSMGLTPESPIVPPPMS(0.795)PS(0.169)S(0.036)K;EAEALLQSMGLTPESPIVPPPMS(0.953)PS(0.039)S(0.008)K;EAEALLQSMGLTPESPIVPPPMS(0.909)PS(0.039)S(0.052)K;EAEALLQSMGLTPES(0.002)PIVPPPMS(0.641)PS(0.179)S(0.179)K;EAEALLQSMGLTPESPIVPPPMS(0.591)PS(0.181)S(0.228)K;EAEALLQSMGLTPESPIVPPPMS(0.792)PS(0.171)S(0.037)K;EAEALLQSMGLTPESPIVPPPMS(0.961)PS(0.032)S(0.006)K 171.99 2.6192e-12 3776442000.0 3733861.0 3601289.0 3277170.0 3092887.0 3073944.0 3775859.0 3507592.0 3127988.0 4267424.0 3610687.0 True False 3713758.307246953 3721155.7273398293 3738567.050327721 3484446.177079149 3465392.5477064652 3514842.7547460273 3337916.374657335 3361414.3481612247 3215774.535751949 3380249.8643953335 1.098663843275171 1.1008522673235808 1.1060031655371383 1.030825032723566 1.0251882809634731 1.039817438281229 0.9874762247063736 0.9944277739842531 0.9513422571580205 1.0 21.688698462222355 3.318943396811475 0.6356958938381102 0.9789077397669157 1.1196773695210855 0.8473089104518781 0.019798881614103286 0.3361077711454963 0.2812446417310719 0.01272607652846005 0.027181133177435302 2084.219221478902 -3.318943396811475 0.14076962975416984 EAEAMALLAEAER ddPTM_BT-474_Trastuzumab_2h_R1 4 EAEAMALLAEAER 13 0 P54920;M0R0Y2;M0R2M1;M0QZM9;M0QZN5;M0R031 P54920 NAPA Alpha-soluble NSF attachment protein 0 ;;; 151.98 9.3417e-05 252323000.0 284045.0 335951.0 302463.0 292731.0 294277.0 335239.0 305805.0 287615.0 357933.0 313663.0 False True 282515.7332803664 347132.9259483319 345047.1613444748 329790.71458561474 331751.4316335678 312064.71699772245 291012.04386145476 309078.29177937703 269725.20820647327 293644.7587995951 0.9621003774604266 1.1821526369733064 1.1750496169419475 1.1230941629395412 1.1297713365964739 1.0627287143602604 0.9910343540647456 1.0525585167699687 0.9185425590740874 1.0 18.163712362157003 2.4690743190381244 2.5389432689790956 0.9997130313475925 1.122315001548477 0.4428049262403253 0.06465323342266156 0.2707804311749546 3.544099556329143 0.024288648122985902 0.020408658882906643 294.4925543743033 -2.4690743190381244 0.12260197020088459 EAEDGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEDGFR 7 0 F6U236;Q9BY11;Q9UNF0-2;Q9UNF0;A0A0U1RR22;B0QYG7;B0QYG8 F6U236;Q9UNF0-2 PACSIN1;PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 1;Protein kinase C and casein kinase substrate in neurons protein 2 0 ; 148.33 0.0048655 596260000.0 1089110.0 1277600.0 1109890.0 1131240.0 1153400.0 1258120.0 1210790.0 1062650.0 1304580.0 1191220.0 False True 1083246.3527714973 1320124.1436744917 1266152.8646631783 1274454.8680113484 1300278.6532625938 1171149.1256959175 1152219.4620330299 1141950.3390273645 983083.7394763848 1115195.3197452489 0.97135123649815 1.1837604770221382 1.1353642202806353 1.1428086591167548 1.1659649482385064 1.050173996393251 1.0331996930333591 1.0239913303153276 0.8815350298465715 1.0 20.08886498094938 1.9933338273305947 1.2399684543095841 0.9548661129187873 1.12316249076144 0.5036891435207421 0.06475516409235886 0.3608119848564215 1.027511619332037 0.046190497532327755 0.021401432451116052 98.4767772254038 -1.9933338273305947 0.1682963778426526 EAEDS(ph)DS(ph)DDNIKR ddPTM_BT-474_Trastuzumab_2h_R1 5 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR 211.17 1.6067e-08 5418130000.0 5296440.0 4090130.0 3144280.0 3459140.0 3703990.0 5189310.0 4762560.0 4682560.0 7091380.0 4777080.0 True False 5267924.555529807 4226267.5045142025 3586967.2934283097 3897066.769326388 4175671.1712312424 4830585.214021783 4532176.778054022 5031996.404757884 5343804.418623661 4472202.664536046 1.1779261698723376 0.9450080467121771 0.8020583060496047 0.8713976225249346 0.9336945314092634 1.0801355789011222 1.0134104194323668 1.1251718185002944 1.1948931699807115 1.0 22.092554136864877 2.727327956563022 5.394088795279086 1.088289350248959 0.9333172853546389 0.29939233176480395 0.1035292265271424 0.21310178280857148 21.59407542448104 0.03454237187408496 0.03403651488743895 533.7377943152536 -2.727327956563022 -0.15497206489432014 EAEDS(ph)DSDDNIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 EAEDS(0.981)DS(0.019)DDNIKR 82.259 0.0078614 434190000.0 141020.0 127870.0 97001.0 116740.0 104410.0 132010.0 127760.0 117280.0 177130.0 122430.0 True False 140260.76398879482 132126.07565095273 110657.89765219357 131519.27203037805 117705.99461344494 122884.45941811457 121579.76070940458 126032.02913577289 133478.68492039762 114616.41258240351 1.2237406565831423 1.1527675022629122 0.9654629311717118 1.1474732899690279 1.0269558430719525 1.0721366744031247 1.0607534991726841 1.0995984457737422 1.1645686853480348 1.0 16.80645412111314 4.469951054683104 24.977915485301686 1.0723678247410617 1.205997404256665 0.4277608634345318 0.05836189829300086 124.39819434856355 433351.50917169586 0.013248552949066742 0.036451225180992836 29508.766418939398 -4.469951054683104 0.13362957951560328 EAEDSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEDSLR 7 0 O43776;K7EIU7;O43776-2;K7EJ19;K7EPK2;K7EMQ6 O43776;REV__H7BZ55 NARS Asparagine--tRNA ligase, cytoplasmic 0 ; 154.01 0.0039719 619190000.0 1379710.0 1486060.0 1453940.0 1461690.0 1384080.0 1529060.0 1470340.0 1419430.0 1631000.0 1505320.0 False True 1372281.7946601908 1535522.6087577601 1658642.1141269698 1646739.804129546 1560334.383915115 1423359.6812200774 1399214.036955742 1525355.0743194956 1229061.9042802923 1409249.188830708 0.9737680216788417 1.0896033298637728 1.176968649173529 1.1685227972321137 1.1072097087455246 1.0100127731143684 0.9928790791901804 1.082388470689931 0.8721395151556398 1.0 20.426495306382684 2.731946344655832 5.574697724845702 1.0032583509414632 1.1105459788500722 0.37495591602442024 0.07106421244707861 0.20089302488762278 23.69193682958381 0.023388290073479298 0.0231743655057485 539.4439722553815 -2.731946344655832 0.10728762790860902 EAEDSLRR ddPTM_BT-474_Trastuzumab_2h_R1 5 EAEDSLRR 8 1 O43776;K7EIU7;O43776-2;K7EJ19;K7EPK2;K7EMQ6 O43776;REV__H7BZ55 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;;; 186.3 0.00033387 7347540000.0 3572000.0 4580700.0 4067190.0 4331530.0 4258310.0 4130680.0 4396840.0 3912770.0 5205570.0 4448860.0 False True 3552768.7488865084 4733165.830408372 4639814.999350781 4879901.253878228 4800580.537519191 3845135.814174816 4184148.0516400877 4204760.766043476 3922727.0245642927 4164929.9459393234 0.8530200495569792 1.136433479516999 1.114019937808187 1.1716646659653855 1.152619755873591 0.9232174043944492 1.004614268655227 1.009563382967098 0.9418470599700792 1.0 21.98986079900962 2.7387120837252916 24.99999922393203 0.9815864561063288 1.0947439859984698 0.2784460514182625 0.08743263351224953 18.475342964296413 3049520.4855586695 0.027478621129572903 0.02748051208961285 547.9136042213402 -2.7387120837252916 0.113157529892141 EAEDTQVFGDLPRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEDTQVFGDLPRPR 15 1 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 0 67.846 0.049603 143730000.0 55152.0 80406.0 87572.0 67665.0 68102.0 80429.0 107410.0 77195.0 85722.0 63542.0 False True 54855.06775996324 83082.2651035465 99901.37641053085 76231.38206215132 76774.38602782141 74869.13253950104 102214.16795395389 82955.68288826739 64596.96171595047 59486.69515895687 0.9221401123962717 1.39665289661056 1.6793902593442152 1.2814862526561657 1.2906144108807758 1.258586181993135 1.718269399246725 1.394524988597838 1.0859060424072684 1.0 15.860279409741494 1.1823891145518348 4.884451973598037 1.0179720755695596 1.387863258749824 0.2716386074724194 0.21213582888129875 0.25182680693440745 11.646860347649945 0.19622669987504918 0.05145754271060974 15.21910504240001 -1.1823891145518348 0.3698911831802645 EAEEAEREER ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEEAEREER 10 1 A0A0A0MRX2;Q96HY6-2;Q96HY6 A0A0A0MRX2 DDRGK1 DDRGK domain-containing protein 1 0 ; 126.67 0.00034328 156602000.0 146584.0 210380.0 229810.0 182430.0 249410.0 242200.0 202384.0 181086.0 234360.0 206770.0 False True 145794.80803101347 217382.37112260467 262165.25045567186 205525.61929503045 281170.88513111114 225457.28407747415 192593.91273804114 194599.55685607588 176605.11826310822 193573.76157529687 0.7531744325498463 1.1229950244989513 1.3543429043387891 1.06174317026476 1.4525258115715258 1.1647099392123716 0.9949381112952409 1.0052992475448694 0.9123401685533288 1.0 17.562523886705346 2.2286434550000553 5.987123413253792 0.9807515616899658 1.169576027607158 0.18650454417508233 0.17523856742459415 0.26230680539430606 33.555368347842375 0.06546090604279196 0.05039934626284063 169.29473619654502 -2.2286434550000553 0.18882446591719226 EAEEES(ph)DHN ddPTM_BT-474_Trastuzumab_2h_R1 5 EAEEESDHN 9 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 EAEEES(1)DHN;EAEEES(1)DHN;EAEEES(1)DHN;EAEEES(1)DHN;EAEEES(1)DHN 168.05 6.2435e-05 1353303000.0 2407311.0 2156283.0 1810622.0 1925777.0 2044918.0 1754147.0 2048196.0 2109314.0 2635190.0 2367590.0 True False 2394350.3050533957 2228053.5761544006 2065541.8393914497 2169580.1707456354 2305326.186121416 1632886.9467078822 1949116.9346114562 2266721.7215594635 1985782.7342369023 2216488.379204224 1.0802449169226094 1.005217801752847 0.9318983391796677 0.9788367000257273 1.0400804298144288 0.736699980937473 0.8793716009967258 1.0226634810389914 0.8959138937375567 1.0 21.079844367961623 5.5817379859797756 0.7523653035144786 0.9293425691219923 1.4991086407994105 0.23729967477436442 0.08283909506593679 13.016907127351695 2.2125466231679622 0.03055921350115735 8.397899047613514 381713.90970004926 -5.5817379859797756 0.5697660716774182 EAEEGEDDRDS(ph)ANGEDDS ddPTM_BT-474_Trastuzumab_2h_R1 11 EAEEGEDDRDSANGEDDS 18 1 P07910;G3V2Q1;P07910-3;P07910-2;G3V4C1;G3V2D6;P07910-4 P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.999)ANGEDDS(0.001);EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS 267.33 7.7055e-31 66222690000.0 3976008.0 3303229.0 2904314.0 2920683.0 3694034.0 3755295.0 3145930.0 3241557.0 3565909.0 3434418.0 True False 3954601.6147040124 3413174.9804209047 3313216.166450168 3290441.1683356245 4164447.3336450798 3495700.2956635715 2993749.3472803454 3483458.443632922 2687138.5076825474 3215230.5028868173 1.2299589753062325 1.0615646303916193 1.0304754708800423 1.0233919979862343 1.295225126132015 1.0872316285021968 0.9311149992488521 1.083424171456844 0.8357529904216451 1.0 21.61649073874402 2.369435195125637 6.089933978357911 0.9812185326326796 1.120459460606509 0.3795322957519194 0.09906586422141783 0.26438982513263487 13.325627783804148 0.034930475975545466 0.029068917383704054 234.11821008656298 -2.369435195125637 0.13924092797382948 EAEEGEDDRDSANGEDDS ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEEGEDDRDSANGEDDS 18 1 P07910;G3V2Q1;P07910-3;P07910-2;G3V4C1;G3V2D6;P07910-4 P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 204.35 8.8299e-15 978610000.0 597420.0 589560.0 532770.0 511030.0 662150.0 641480.0 561280.0 549750.0 577750.0 600540.0 False True 594203.5570996018 609183.1482034541 607779.3850801444 575726.3456029134 746470.8776294672 597135.9974814942 534128.7421021797 590775.1365739356 435371.25395336526 562213.0230518385 1.0569010903982807 1.0835450678403882 1.0810482151070777 1.024035947224632 1.3277367243779397 1.0621169787922817 0.950046904290459 1.0508030094483662 0.7743884188061971 1.0 19.100757347000137 1.9910219752690606 1.5931743713730595 0.9286393251011729 1.1091101831050885 0.36580422987637495 0.10314366297037925 0.4437554331150687 2.100335802957652 0.06745774524188987 0.03254181663867714 97.95395487843531 -1.9910219752690606 0.1804708580039156 EAEEGPTGASESQDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEEGPTGASESQDSPR 17 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 EAEEGPTGASESQDS(1)PR;EAEEGPTGASES(0.002)QDS(0.998)PR 208.52 5.3546e-12 278490000.0 251360.0 378910.0 358220.0 346810.0 432990.0 418110.0 365650.0 302440.0 274280.0 380250.0 True False 250006.70568872147 391521.79029406776 408654.26229594275 390716.1104407697 488128.70996720245 389207.0398250729 347962.1125813537 325009.6085592021 206687.36916370268 355982.11945159617 0.7023013011829532 1.0998355504406283 1.1479628890504108 1.0975722911102461 1.3712169328032067 1.0933331157886834 0.9774707592544323 0.9129941949328568 0.5806116596027697 1.0 18.441445252633105 1.7489107837668745 2.1888630268345635 0.7903450642212141 1.0978705520313699 0.2804313042911898 0.18202432465237556 0.33937277967120455 3.3095660927660595 0.11985904280757881 0.05155863199761065 56.093273292403644 -1.7489107837668745 0.30752548781015576 EAEEVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEEVYR 7 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ; 180.0 0.0016119 2966500000.0 2178900.0 2489900.0 2378300.0 2330800.0 2203200.0 2477800.0 2359300.0 2206600.0 2709100.0 2384200.0 False True 2167169.04449855 2572774.8163236678 2713143.967445821 2625879.0410176935 2483764.460610502 2306515.5181138115 2245171.645598761 2371267.69688776 2041478.60508016 2232038.314783683 0.970937205756963 1.1526571023817784 1.215545427457756 1.1764489093334312 1.1127785953133222 1.0333673498509575 1.0058840077825235 1.0623776846400463 0.9146252515284483 1.0 21.089930361757393 2.7243563776809308 2.8282442960659586 1.008460090740714 1.1375859493271405 0.4425686570276107 0.06892984448664843 0.2694833883964588 4.329602427406241 0.02404789248631025 0.023780666441644283 530.0982587609172 -2.7243563776809308 0.12912585858642656 EAEGGRPPAATS(ph)PAEVVWSSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAEGGRPPAATSPAEVVWSSEK 22 1 O75564;O75564-2 O75564 JRK Jerky protein homolog 1 EAEGGRPPAAT(0.011)S(0.989)PAEVVWSSEK;EAEGGRPPAAT(0.007)S(0.993)PAEVVWSSEK 169.13 5.2314e-12 557460000.0 421980.0 406260.0 397370.0 369680.0 394180.0 450340.0 451390.0 441460.0 539200.0 478250.0 True False 419708.106566385 419782.1185106442 453316.24199804274 416481.45009585563 444376.48651209497 419209.05578633223 429554.54122274637 474403.98688845814 406321.384909831 447727.67554957507 0.9374182778654532 0.9375835835820773 1.0124820661166587 0.9302115389329788 0.9925151175134157 0.9363036476844169 0.9594102948750675 1.0595815554759678 0.9075190279695825 1.0 18.77226197325472 1.9310780382041925 24.999690512239944 0.9991143063081256 0.958667997757016 0.0857706646629689 0.04277193771132123 301.12180826435366 109223.00874944282 0.01670962276087394 0.010783997460054122 85.32534210140882 -1.9310780382041925 -0.04044630855110953 EAEGSSAEYKK ddPTM_BT-474_Trastuzumab_2h_R1 5 EAEGSSAEYKK 11 1 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33;E9PRH9;H0YDS9 P49321 NASP Nuclear autoantigenic sperm protein 0 ;;;; 181.66 9.8239e-06 4379080000.0 4523420.0 3683670.0 3473240.0 3283300.0 3206280.0 4640040.0 4725470.0 4328950.0 6720250.0 4883380.0 False True 4499066.409319206 3806278.729124465 3962242.0020567286 3698965.44335567 3614580.7528895373 4319284.956279279 4496880.963051574 4651998.230962695 5064134.43423644 4571718.507528041 0.9841083614205027 0.832570667432135 0.8666854697051635 0.809097374929089 0.790639394559742 0.9447836626789049 0.9836303253681882 1.0175600757794823 1.1077091526736742 1.0 22.12430514516536 2.2834714210600775 1.9264649040126889 1.0385459016959466 0.8541527899105371 0.6645032797484639 0.05721531991579503 0.1994922070624729 1.5032227666983649 0.027415892516565035 0.01853533570905886 192.0752561623709 -2.2834714210600775 -0.1843931117854095 EAEHLSSPWGES(ph)SPEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEHLSSPWGESSPEELR 18 0 Q6PJI9-4;Q6PJI9-3;Q6PJI9;H3BNY4 Q6PJI9-4 WDR59 WD repeat-containing protein 59 1 EAEHLSSPWGES(0.576)S(0.424)PEELR 185.71 3.3299e-14 764080000.0 81712.0 124890.0 120510.0 134800.0 161400.0 154940.0 119320.0 105130.0 116160.0 105470.0 True False 81272.07167105674 129046.88815240063 137476.76050830242 151865.6661786447 181953.33330725055 144229.36248952852 113548.0357533355 112975.33443932311 87533.9244642543 98738.81430259018 0.8231015558075702 1.3069519728779586 1.3923274396125298 1.5380543836919547 1.842774136922945 1.4607159657349156 1.1499837885976805 1.1441836246190316 0.8865199069132235 1.0 16.591329700240735 1.8312208274515989 1.8762191362315788 0.9781034570084176 1.410829977973528 0.3324476595520689 0.24512793218782936 0.4067680790689665 2.7334585583527757 0.1759915335737508 0.07774297593700503 67.79861583129141 -1.8312208274515989 0.43272652096511044 EAEHLSSPWGESS(ph)PEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEHLSSPWGESSPEELR 18 0 Q6PJI9-4;Q6PJI9-3;Q6PJI9;H3BNY4 Q6PJI9-4 WDR59 WD repeat-containing protein 59 1 EAEHLSSPWGES(0.04)S(0.96)PEELR 215.11 6.241e-19 423580000.0 69810.0 118320.0 125470.0 150250.0 145070.0 167400.0 146610.0 131770.0 116250.0 135070.0 True False 69434.15071662022 122258.20967404972 143135.08539520943 169271.6345945205 163543.80460274377 155828.03201721385 139517.91419541172 141603.34651450216 87601.7451701926 126449.71696075525 0.5491048330157172 0.9668523790527234 1.131952596142486 1.3386477934707866 1.293350499578429 1.2323319953778655 1.1033469868399333 1.1198391733723687 0.6927792902642919 1.0 16.94820428217919 4.69473744833449 2.3634294975180823 1.1345009471605978 0.44263418769658114 0.4953735154387716 0.17072888119529395 0.41297280481898 2.9933206599366633 0.043896032227173414 0.5629918865434311 49515.075812499206 -4.69473744833449 -0.6918667594640167 EAEILEVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAEILEVLR 9 0 P36551 P36551 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial 0 ;; 92.439 0.023439 42902100.0 60447.0 79177.0 76015.0 78952.0 75794.0 92396.0 88109.0 67393.0 85213.0 75078.0 False True 60121.560068293074 81812.35858149278 86717.2512657755 88947.31510486909 85445.91663376546 86008.88199678906 83846.83106093387 72422.20787471996 64213.39794569999 70286.45776249039 0.8553790016201102 1.1639846591494243 1.2337689794925715 1.2654971944302107 1.2156810764671253 1.2236906615414787 1.1929300996255385 1.030386367164022 0.9135955913824498 1.0 16.10095912857806 1.593930430971463 3.610823951849828 0.9595794062336669 1.1750837956346878 0.3718694448086681 0.11073732808919144 0.19243465381166105 5.826976392889255 0.07003886237451795 0.029719307285894905 39.25820431913851 -1.593930430971463 0.2155043894010209 EAELGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAELGAR 7 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YBN4;Q4VXU2;Q4VXU2-2 P11940-2 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like 0 ; 143.02 0.0056997 676340000.0 1067320.0 1207960.0 1053140.0 1141500.0 1165120.0 1042260.0 1148030.0 1020420.0 1345630.0 1203250.0 False True 1061573.667710401 1248166.2183727615 1201412.9579430213 1286013.7829593697 1313491.1257927113 970211.0194161367 1092495.4029995105 1096568.9219877676 1014017.5170182042 1126457.5548458463 0.9424000603872512 1.1080454944825426 1.0665408144094985 1.1416442434312213 1.166036944882899 0.8612938989511312 0.9698504824258706 0.9734667030022548 0.9001826235316702 1.0 20.10336152287348 2.739919014224447 24.997838327948 0.9446013118467399 1.0883462894340359 0.5374464839840463 0.0667032634271469 96.86602237792238 1782584.80800434 0.02078807894490896 0.02098618669532936 549.4384068763277 -2.739919014224447 0.14374497758729599 EAELTEINRR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAELTEINRR 10 1 Q01970;Q01970-2 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 0 ; 160.77 1.1669e-05 713720000.0 346910.0 453210.0 382150.0 404170.0 350510.0 395580.0 432560.0 351250.0 460890.0 429980.0 False True 345042.27510532405 468294.82087876997 435953.39829265466 455337.88055951655 395145.3708644633 368234.4856951572 411635.42026033154 377462.0586113597 347309.8351095915 402538.3082756017 0.8571663069371463 1.1633546702296653 1.0830109565477057 1.131166577685732 0.9816342016172116 0.9147812223701252 1.022599369544976 0.9377046876068418 0.8627994602486442 1.0 18.618766560842584 3.064189259869771 6.817490769292643 0.9493780941718466 1.067412002885123 0.26814331060332 0.08630964328925238 0.2628603637757914 22.3546329644631 0.024116556479518558 0.028858756338453792 1159.2824462583437 -3.064189259869771 0.11803390871327646 EAEMEEHR ddPTM_BT-474_Trastuzumab_2h_R1 5 EAEMEEHR 8 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;;; 171.53 0.00028884 1902972000.0 1309861.0 1453016.0 1216024.0 1284144.0 1303494.0 1362029.0 1290495.0 1238231.0 1454998.0 1330880.0 False True 1302808.8539152397 1501378.759193281 1387229.6093299133 1446716.4987337475 1469486.2344857561 1267875.141101394 1228068.8266803618 1330634.0848296173 1096433.23887432 1245942.0989763057 1.0456415711337284 1.2050148722214682 1.1133981350093978 1.1611426405146776 1.179417756004167 1.0176035805701638 0.9856548130843087 1.067974254921554 0.8800033643418698 1.0 20.24880559478024 2.6628196309881487 5.52874315920277 0.9984863017850607 1.1438910480047895 0.6170275330398086 0.05924553828550165 0.15242894632071458 8.305896775597912 0.01854058574006279 0.017503446223289545 460.0654618119923 -2.6628196309881487 0.14540474621972876 EAEMEEHREHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEMEEHREHIK 12 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 93.011 0.0047823 275760000.0 645140.0 676020.0 699090.0 640710.0 728180.0 786360.0 761220.0 229930.0 1014700.0 646200.0 False True 641666.6379217928 698520.9170372807 797515.7954007898 721823.8203065239 820909.4067389946 732000.7840923305 724396.8804572083 247088.54416088236 764640.7812833918 604958.9627603455 1.0606779590370148 1.154658348807702 1.3182973465866736 1.193178157098359 1.3569670957403401 1.21000072592083 1.1974314375836068 0.40843852124026875 1.2639547942135443 1.0 19.20647775528661 1.951995465286655 24.976969337725084 0.8195349979529951 1.2213281076531488 0.30698640973521807 0.2140214732490447 349.2575939123463 181719.64377514698 0.08374219171360588 0.05404423818319933 89.53554165904825 -1.951995465286655 0.4017931097001537 EAENPEGEEKEAATLEVERPLPMEVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAENPEGEEKEAATLEVERPLPMEVEK 27 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 ;; 278.86 2.9995999999999988e-61 2277240000.0 1585150.0 1308150.0 1129800.0 1167430.0 1145520.0 1752530.0 1733600.0 1484180.0 2930770.0 1729810.0 False True 1576615.7285267215 1351690.9819566272 1288866.0196023583 1315226.5183007058 1291395.1819710147 1631381.7261118707 1649739.14500488 1594937.0481133305 2208521.003805981 1619412.044835152 0.9735729294808431 0.8346800842118118 0.7958851632065996 0.8121629837788376 0.7974469413696822 1.0073913747368337 1.0187272289757576 0.984886492106885 1.363779533967093 1.0 20.627038682455087 2.136533332553584 1.1452041133156268 1.1338219735827129 0.840141167266402 0.5366776114969694 0.11018600290584547 0.38129322372468094 0.9409428151092067 0.07705441953928475 0.03987282777052206 136.94094879616526 -2.136533332553584 -0.2936808063163109 EAENQGLDISS(ph)PGMSGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAENQGLDISSPGMSGHR 18 0 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 EAENQGLDIS(0.001)S(0.999)PGMSGHR;EAENQGLDIS(0.001)S(0.999)PGMSGHR 217.26 5.4863e-19 1418080000.0 473460.0 568300.0 544220.0 576700.0 503800.0 574360.0 544520.0 507150.0 692540.0 617770.0 True False 470910.94396635145 587215.5219553948 620841.4455549603 649710.1608696161 567955.94374345 534655.8450980094 518179.48733159795 544996.1082555194 521872.79656056 578343.3897004942 0.8142410760676652 1.015340595938159 1.073482392314494 1.1233986113441712 0.9820393106551739 0.924460890570377 0.8959720065270336 0.942339997242392 0.902358020951569 1.0 19.141566817536056 2.8859248320164737 4.584116569830521 0.9280561692787076 1.0161246260786996 0.1552124264252267 0.07929335656741006 0.3738728111067216 12.49952650745717 0.025224859295788573 0.02704219657553953 768.9973301879996 -2.8859248320164737 0.08806845679999198 EAEQEAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEQEAAR 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 84.213 0.040972 48112000.0 34445.0 49549.0 50580.0 44808.0 43596.0 30715.0 41578.0 35497.0 35048.0 42255.0 False True 34259.55194719929 51198.208511996985 57701.22435075873 50480.68820573226 49147.69218626332 28591.744345332838 39566.71329661566 38145.96639011369 26410.890019139013 39558.24972367446 0.8660532805802058 1.2942485794905214 1.4586394684754274 1.276110256605237 1.2424132141733726 0.7227757685199482 1.0002139521591658 0.9642986395144889 0.6676455658080561 1.0 15.271690974229973 2.7570674852820516 23.986508335211948 0.8875483064167711 1.246744101410563 0.5120620608237352 0.17311837518051687 401.4610219941216 520327.305142431 0.053186763242661604 0.056303085331593075 571.5674459825364 -2.7570674852820516 0.35919579499379184 EAEREEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EAEREEER 8 1 P49756 P49756 RBM25 RNA-binding protein 25 0 83.456 0.016551 46235000.0 40670.0 64293.0 52885.0 64757.0 60445.0 39843.0 43819.0 32674.0 44005.0 44799.0 False True 40451.03723886177 66432.9536390608 60330.74831533959 72955.22956031511 68142.31246441617 37088.74719033361 41699.30756516432 35112.29979521018 33160.55738678987 41939.88946564644 0.9645003302165541 1.5840040230310328 1.43850518167811 1.7395188802315222 1.6247613747344878 0.8843310667452648 0.9942636496293301 0.8372053489547502 0.7906686881936624 1.0 15.356035438705131 2.7310803128574666 24.68917656114649 0.8946563586965859 1.4897720841739006 0.6668509704222557 0.2008117387560987 282.01471477161493 930803.7452594643 0.06438893769818459 0.06183546176131576 538.3693324382178 -2.7310803128574666 0.5951157254773147 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK 32 0 Q3ZCM7;A0A075B736;Q5SQY0 Q3ZCM7 TUBB8 Tubulin beta-8 chain 0 ; 398.23 8.398299999999993e-167 1113520000.0 478130.0 506480.0 506210.0 466620.0 517790.0 628450.0 583640.0 563460.0 750780.0 689790.0 False True 475555.8012052365 523337.88062637503 577479.9679438038 525694.0441563731 583727.4873182233 585006.7307121735 555407.1034786854 605508.2463919058 565760.3289365779 645767.0116410702 0.7364200905783642 0.810412844249245 0.894254363468133 0.8140614721406116 0.9039289353521055 0.9059099027457468 0.8600735148536689 0.9376574452961666 0.8761059619611514 1.0 19.300654218644492 7.999999999999999 0.1679964897864435 0.9812514538090911 0.12277792642379111 0.6975771869238989 0.03850094852938789 33.501659176211874 0.35851592066124305 0.09685463657718121 7.215505689031385 99999999.99999979 -7.999999999999999 -0.8584735273852999 EAESSPFVER ddPTM_BT-474_Trastuzumab_2h_R1 1 EAESSPFVER 10 0 P14625 P14625 HSP90B1 Endoplasmin 0 90.761 0.024685 378650000.0 162370.0 187990.0 176870.0 171600.0 167120.0 173510.0 195190.0 180710.0 251550.0 183170.0 False True 161495.81796100287 194247.13350764517 201771.75861840067 193324.54240545537 188401.7414021543 161515.66209860673 185747.91400178973 194195.4978267869 189558.87309730685 171479.9337802734 0.9417767688663577 1.1327688856968223 1.176649384976681 1.1273887162399576 1.098680978286146 0.941892491663576 1.083204955279483 1.1324677677775417 1.105428891407195 1.0 17.387680239584615 2.968934231696406 24.955542418126 1.0642766423480543 1.1044525114558272 0.05673678145505512 0.07669084536268223 2245.78223812863 1804069.5955385792 0.024457469463662878 0.02596316965343418 930.9668818531021 -2.968934231696406 0.04017586910777293 EAETEPHEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAETEPHEGK 10 0 P41223;P41223-2 P41223 BUD31 Protein BUD31 homolog 0 128.03 0.00034028 313690000.0 583180.0 495250.0 466350.0 408590.0 413030.0 514970.0 491480.0 486130.0 603290.0 502570.0 False True 580040.2236773887 511734.09686505346 532008.0264131344 460317.4521063237 465626.92227939074 479371.3360089879 467705.23476407415 522407.4891181215 454617.26317183167 470495.55232817587 1.2328282824505943 1.0876491697590231 1.130739756795943 0.9783672764354787 0.9896521231185004 1.0188647557599462 0.9940694071382944 1.1103345962210849 0.9662519888280072 1.0 18.843821559421627 4.8439226711022885 1.0025662498582657 1.0195258546606618 1.3645795165563004 0.6678116110006406 0.04731038749831436 1.4692464232408806 1.0334244266837558 0.014989590318999256 0.5730635878168402 69810.80904196377 -4.8439226711022885 0.3450536618956386 EAFEETHLTSLDPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAFEETHLTSLDPVK 15 0 J3QQZ9;Q9NVS9-3;Q9NVS9;Q9NVS9-4;A0A286YFL3 J3QQZ9 PNPO Pyridoxine-5-phosphate oxidase 0 ; 182.02 5.6414e-07 374130000.0 701880.0 763690.0 681200.0 715790.0 689230.0 850280.0 832830.0 799300.0 1166120.0 902890.0 False True 698101.1560661998 789108.9599896454 777107.0389034576 806408.9406083986 776999.355113732 791502.1449438252 792542.8311804421 858947.824763159 878745.3512074404 845266.7871969803 0.8258944591697471 0.933562008991786 0.9193630350489107 0.9540288969386345 0.9192356388334713 0.9363932866314953 0.9376244792589356 1.0161854668530712 1.039607097448463 1.0 19.689047238102447 7.999999999999988 0.18409893487057544 1.0314628120677667 0.2701786275316033 0.6866129834618455 0.03205572654248714 33.54278959798861 0.38316051363908016 0.07223518939762862 7.198552015016795 99999999.99999714 -7.999999999999988 -0.7612841845361633 EAFGFIER ddPTM_BT-474_Trastuzumab_2h_R1 4 EAFGFIER 8 0 O75534-2;O75534;O75534-3;O75534-4;E9PLT0;E9PNG3 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;; 122.52 0.0032269 626020000.0 585320.0 750150.0 750390.0 724970.0 611010.0 688810.0 771260.0 634310.0 892910.0 697470.0 False True 582168.7021551648 775118.2892747488 856038.3894931964 816751.1276671521 688818.5017599955 641194.1859843304 733951.2073006829 681645.4331609161 672864.2948810034 652956.867465891 0.8915882980365101 1.1870895734399167 1.3110182802969201 1.2508500459409249 1.0549219038514484 0.9819855153262861 1.1240424044380282 1.0439363871098635 1.0304881201301592 1.0 19.316628168891075 3.140456509293247 8.243876534383281 1.043930363172537 1.1725774334546137 0.22748305613434427 0.10810382926033624 0.3715882782788158 27.760150050905068 0.03219527153582326 0.03856182147746987 1381.8360204581436 -3.140456509293247 0.12864707028207678 EAFNMIDQNR ddPTM_BT-474_Trastuzumab_2h_R1 7 EAFNMIDQNR 10 0 J3QRS3;P19105;O14950;J3KTJ1;P24844-2;P24844 J3QRS3;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 ;;;;;; 204.34 4.3927e-07 2427863000.0 1724365.0 1987729.0 1773695.0 1833556.0 1713476.0 1952040.0 1866683.0 1686502.0 2120078.0 1962424.0 False True 1715081.2104349628 2053889.3581574466 2023415.8387666882 2065684.0016012664 1931677.012032061 1817100.0694078961 1776384.411868452 1812357.3431236297 1597613.1844897338 1837180.4202042846 0.9335398916586837 1.1179573522392892 1.1013702391525027 1.1243773223816382 1.051435662381634 0.98907001698061 0.9669079815639052 0.986488492470492 0.8696005938883715 1.0 20.80906188251956 2.6785304650174653 2.3934064381658837 0.9588852667574582 1.0762112822646208 0.4345993061517277 0.05975005289972398 0.2754837334501105 3.110718409554817 0.02107218262659323 0.020163943320267334 477.01327461355095 -2.6785304650174653 0.1173260155071626 EAFQLFDR ddPTM_BT-474_Trastuzumab_2h_R1 9 EAFQLFDR 8 0 P60660;F8W1R7;J3KND3;G3V1V0;B7Z6Z4;G3V1Y7;P60660-2;G8JLA2 P60660;P60660-2 MYL6 Myosin light polypeptide 6 0 ;;;;;;;; 183.47 0.00051912 10590882000.0 3588309.0 4201587.0 3916024.0 3903557.0 3389311.0 3858772.0 4013497.0 3449594.0 4729239.0 3897136.0 False True 3568989.9430426117 4341434.283382025 4467366.140509203 4397746.9159592865 3820919.6658298043 3592024.174212234 3819348.817062558 3707020.2209634 3563781.417005904 3648417.4439740065 0.9782296016968719 1.189949985178548 1.2244668295531347 1.2053847958716806 1.0472813828200265 0.984543087344647 1.046850826615489 1.0160625196785489 0.9768019892822589 1.0 21.79883937829396 3.099111145020677 5.2800324204764255 1.010706682688291 1.1570254869786085 0.5167063085922868 0.0658624663051005 0.16695635288187574 7.3300431907373325 0.019471260715905894 0.023437539837354707 1256.3514491087888 -3.099111145020677 0.14631880429031763 EAFSLFDK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAFSLFDK 8 0 P0DP25;P0DP24;P0DP23;E7EMB3;M0QZ52;F8WBR5;G3V479;P27482 P0DP25 CALM2;CALM3;CALM1;CALML3 Calmodulin-like protein 3 0 ;;; 147.29 0.0012555 1239814000.0 1213275.0 1096463.0 1016132.0 866088.0 903701.0 1106139.0 1077797.0 1054249.0 1340180.0 1138114.0 False True 1206742.862207524 1132958.1081291197 1159194.5532223242 975734.6519979977 1018781.9656945218 1029674.214501126 1025659.8415256263 1132922.4137479486 1009910.5964919451 1065478.5901315822 1.1325829288212128 1.0633325893382841 1.087956683464816 0.9157712421771876 0.9561730992348766 0.9663959689457161 0.9626282977670734 1.0632990885420206 0.9478469167242725 1.0 20.023070173030128 3.7679398341825503 20.372399028831616 0.9792732447236026 1.091495374721403 0.657602948877891 0.039975503060367935 50.85050056078513 35259.84305249916 0.01109172961056151 0.019982824082439916 5860.569683657857 -3.7679398341825503 0.11222212999780035 EAFSLFDKDGDGTITTK ddPTM_BT-474_Trastuzumab_2h_R1 5 EAFSLFDKDGDGTITTK 17 1 P0DP25;P0DP24;P0DP23;E7EMB3;M0QZ52;F8WBR5;G3V479 P0DP25 CALM2;CALM3;CALM1 0 ;;;; 238.43 5.6396e-19 38093668000.0 3381600.0 3030160.0 2810615.0 2339026.0 2431158.0 3467450.0 3487940.0 3440510.0 4842690.0 3524120.0 False True 3363393.841331079 3131017.0438296017 3206325.1616964783 2635146.4517742614 2740751.5606975774 3227753.3429993317 3319215.0169752697 3697258.326755786 3649273.9382214155 3299207.6444490734 1.019455033995814 0.9490209108534127 0.9718470333600039 0.7987210069084021 0.8307302407318617 0.9783419811208416 1.0060642962439357 1.1206503879731347 1.106106171995973 1.0 21.653688149951996 2.171850138572053 2.3372347568897482 1.0846784574972865 0.9139047755491868 0.4942000034155971 0.06912060836221957 0.24172176367767195 2.649778774461988 0.034519272218237085 0.02229163979246813 148.5422980878278 -2.171850138572053 -0.17077368194809972 EAFVHVVTLEDMR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAFVHVVTLEDMR 13 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 ;; 180.54 1.2814e-05 539854000.0 691976.0 828381.0 783215.0 765607.0 611162.0 727292.0 730492.0 620727.0 921680.0 769152.0 False True 688250.4781017618 855953.1608181118 893484.8641731815 862532.7677005464 688989.8580590208 677016.0159012148 695155.3112095676 667048.8007278387 694544.3138792523 720064.0608558437 0.9558183993848139 1.1887180701683056 1.2408407984023195 1.1978556000633738 0.9568452246319735 0.9402163678277965 0.9654075921846864 0.9263742450012116 0.9645590602782487 1.0 19.457765736780388 3.2305123551356134 24.98269324909518 0.9529304571027584 1.1556612507899835 0.6089511192898919 0.073112582435407 109.84487373781198 340970.41238868836 0.021223657809461192 0.02578919527138565 1700.2483228956535 -3.2305123551356134 0.20273079368722513 EAGDVCYADVYR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAGDVCYADVYR 12 0 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;; 276.61 1.6883000000000002e-27 12755900000.0 3197640.0 3578640.0 3537920.0 3159940.0 2978350.0 3430510.0 3283770.0 3011630.0 4310560.0 3416400.0 False True 3180424.261531203 3697752.869066439 4036028.383848089 3559988.0800040523 3357625.218436496 3193366.9182519238 3124921.4998804075 3236373.1233472712 3248280.246544734 3198362.4270728035 0.994391453141845 1.1561394161482463 1.2619046389754933 1.1130658770470283 1.0497951045246152 0.9984381042065168 0.9770379596224776 1.0118844243393816 1.0156073054915218 1.0 21.60890199848467 3.151222660234215 2.7208793315265423 1.0014687778926477 1.1449020169771034 0.49994128266141247 0.061543853079816496 0.2174429853814014 3.2696759336148777 0.019396430972572418 0.02454900899777878 1416.5198352322382 -3.151222660234215 0.1434332390844557 EAGELPT(ph)SPLHLLS(ph)PGTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 2 EAGELPT(0.5)S(0.5)PLHLLS(1)PGTPR 114.92 0.0002627 40670000.0 36575.0 41939.0 38815.0 39685.0 44959.0 37266.0 38853.0 34434.0 43267.0 40234.0 True False 36378.08426386453 43334.91426233911 44279.81461397195 44709.1169310053 50684.26215712938 34689.88913472808 36973.53195712658 37003.63993230905 32604.42759809654 37666.23167393961 0.9658010012462617 1.1504977359421258 1.1755838756922457 1.1869814139633856 1.3456154200898371 0.920981143933472 0.981609529649543 0.9824088656554143 0.8656142690444604 1.0 15.200984085325839 2.7089783854316165 24.98078578510327 0.9544598576693518 1.1659167694370303 0.5734055697014613 0.09258476691263998 523.4832390168074 442056.1919953567 0.030291412520462302 0.028562269991604657 511.65637008479075 -2.7089783854316165 0.21145691176767845 EAGELPT(ph)SPLHLLSPGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 2 EAGELPT(0.54)S(0.46)PLHLLS(0.061)PGT(0.939)PR;EAGELPT(0.5)S(0.5)PLHLLS(0.017)PGT(0.983)PR 120.63 6.233399999999999e-05 113427000.0 80914.0 83785.0 76312.0 79385.0 73792.0 85260.0 85465.0 71797.0 112318.0 86397.0 True False 80478.36801439046 86573.73307589798 87056.06628420527 89435.1328604726 83188.97380054914 79366.17688045188 81330.73144199482 77154.85671777882 84638.73388409201 80883.0694918069 0.9949964624245938 1.0703566719196718 1.0763200114830418 1.105733664936294 1.02850910979554 0.9812458574966831 1.005534680533276 0.9539061413290486 1.0464332574898823 1.0 16.303550127737207 2.990771521210831 5.8163339958089 0.9928584692877411 1.0641326669551907 0.44259716528766424 0.033833546301639164 0.13571254687224663 17.200869338916366 0.010137139450905063 0.011451984958208076 978.9748192305419 -2.990771521210831 0.07127419766744958 EAGELPTS(ph)PLHLLSPGTPR ddPTM_BT-474_Trastuzumab_2h_R1 6 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 EAGELPT(0.006)S(0.994)PLHLLSPGTPR;EAGELPT(0.139)S(0.861)PLHLLSPGTPR;EAGELPT(0.006)S(0.994)PLHLLSPGTPR;EAGELPT(0.009)S(0.991)PLHLLSPGTPR;EAGELPT(0.035)S(0.965)PLHLLSPGTPR;EAGELPT(0.049)S(0.951)PLHLLSPGTPR 206.85 2.2236e-16 3030333000.0 1040341.0 1255869.0 1132674.0 1134334.0 1122592.0 1148502.0 1180975.0 1048194.0 1224371.0 1159495.0 True False 1034739.9196487515 1297669.840476158 1292144.6538211014 1277940.5680941148 1265547.4370759171 1069108.7600229015 1123846.7274873909 1126415.558901282 922641.1727808501 1085495.0364063885 0.9532424239122589 1.1954636335990902 1.1903736180119642 1.177288265015777 1.1658712335208878 0.9849043285930307 1.0353310607554398 1.0376975675820352 0.8499727238139401 1.0 20.049921698346544 2.735576808314963 24.840003842773346 0.9928309692489371 1.1449912826847515 0.46736532366297023 0.08197297347458284 221.4155824391955 1843263.4221420581 0.025842779509003894 0.025353844273952125 543.9723288981976 -2.735576808314963 0.15216031343581438 EAGENAPVLS(ph)DDELVSMSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAGENAPVLSDDELVSMSVR 20 0 O60675 O60675 MAFK Transcription factor MafK 1 EAGENAPVLS(1)DDELVSMSVR 125.88 1.317e-05 0.0 32295.0 46213.0 42287.0 40570.0 39730.0 40724.0 38577.0 39522.0 41698.0 37111.0 True False 32121.12730831183 47751.171768651555 48240.64203480694 45706.15784026419 44789.38000184058 37908.8457339845 36710.88313154897 42471.332328649594 31422.08662457366 34742.54420767442 0.9245473537086689 1.3744293303109218 1.3885178283561301 1.3155673794945613 1.2891796217948504 1.0911361444165812 1.0566550023541383 1.2224588986568212 0.9044267580620279 1.0 15.084415786487654 2.7268904832127365 9.39379905042039 1.0812844460258388 1.2753292849884268 0.3238021305272438 0.14353031939611582 0.30945321847782 226.20619739289344 0.04533394248244183 0.04411037963642909 533.2004204648492 -2.7268904832127365 0.19404483896258795 EAGEQGDIEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAGEQGDIEPR 11 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ; 228.98 6.6777e-12 1383920000.0 1189520.0 1391510.0 1203200.0 1292420.0 1274430.0 1319170.0 1341620.0 1253190.0 1546670.0 1344690.0 False True 1183115.7564880955 1437825.5691644421 1372600.1015981212 1456040.2394851919 1436721.1063615836 1227978.8828921611 1276720.715113896 1346709.4013698779 1165513.9028161871 1258870.7329529698 0.9398230696116243 1.1421550533561875 1.090342372467722 1.1566241087118736 1.1412777092620343 0.9754606654582041 1.0141793606711746 1.0697757649912651 0.9258408129659247 1.0 20.263698716954273 2.7353885760761076 24.99164698922119 1.0084154585404577 1.0999882490071358 0.339229514346451 0.06649069957964046 344.18637706619467 2711740.0728044566 0.020932590166135873 0.020517653134136987 543.7366110911295 -2.7353885760761076 0.0915727904666781 EAGLAHLCEFIEDCEHTVLATK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAGLAHLCEFIEDCEHTVLATK 22 0 Q9UBF2;Q9UBF2-2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 ; 299.68 6.093399999999998e-56 156379000.0 188618.0 191554.0 175469.0 163958.0 157805.0 213480.0 194346.0 157434.0 274830.0 206410.0 False True 187602.50164542976 197929.75909316193 200173.50999611104 184715.0659890076 177900.53136648497 198722.6300778659 184944.74150618303 169182.52451365342 207101.82903332496 193236.73708350828 0.9708428349437319 1.0242863861214213 1.0358977957157545 0.9559003571312736 0.9206351444943117 1.0283894929978397 0.9570889277966755 0.8755194641924651 1.071751842631377 1.0 17.560009871766837 3.7247374054745057 24.287257482379818 0.9615889347561147 1.0117367438270946 0.06584905768842353 0.05442878856864843 1006.501649631373 1768414.163310517 0.014574389391666807 0.022727310950836063 5305.635439733038 -3.7247374054745057 0.05014780907097982 EAGLSQS(ph)HDDLSNATATPSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAGLSQSHDDLSNATATPSVR 21 0 O14523;O14523-2 O14523 C2CD2L C2 domain-containing protein 2-like 1 EAGLS(0.235)QS(0.765)HDDLSNATATPSVR;EAGLS(0.048)QS(0.952)HDDLSNATATPSVR 204.61 3.3505e-22 848010000.0 975261.0 625301.0 503259.0 460033.0 486569.0 658271.0 553974.0 524947.0 1038099.0 633955.0 True False 970010.3031376844 646113.7657825632 574113.492794355 518273.1306317541 548530.6780295882 612766.2751732569 527176.1612338109 564121.2107668538 782273.4112639279 593495.4491438186 1.6344022595910874 1.0886583321146814 0.9673427043502623 0.8732554417719954 0.9242373784346671 1.0324700485188867 0.8882564508191589 0.9505063797551602 1.3180781965429422 1.0 19.17887744192351 4.742403997542256 2.897800007981596 0.9807589927333136 1.7515958699651009 0.7196016484562685 0.1189374250253657 0.20499972574815456 2.4340896543290524 0.028654591562726064 0.3719795376711443 55259.124203289 -4.742403997542256 0.7708368772317873 EAGPNPSRPTSWK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAGPNPSRPTSWK 13 1 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 0 105.0 0.0013564 336670000.0 216830.0 258400.0 228250.0 224730.0 232990.0 289680.0 282710.0 267270.0 344420.0 312830.0 False True 215662.6113720777 267000.6877939018 260385.6160154346 253180.79495791416 262659.8954600766 269655.10343337187 269034.2372429223 287215.0445695605 259542.30599155062 292864.9215727627 0.7363893572979378 0.911685449933836 0.8890979999144125 0.8644968253564332 0.8968636258979836 0.9207490674719665 0.9186290928873855 0.9807082494794499 0.8862184811951505 1.0 18.1598758765865 7.756934040665052 0.24924163531515475 0.9687310457273155 5.95906292014308e-32 0.6121395612417885 0.042135007445986014 30.63321223185112 0.4646387046011068 0.052598133672020944 12.14002972996005 57139184.88123034 -7.756934040665052 -0.9687310457273155 EAGS(ph)PAQEFK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAGSPAQEFK 10 0 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 EAGS(1)PAQEFK;EAGS(1)PAQEFK;EAGS(1)PAQEFK;EAGS(1)PAQEFK 153.81 1.6364e-05 4582560000.0 3480800.0 2897720.0 2615940.0 2520160.0 2537810.0 3296070.0 3454090.0 3193710.0 4570200.0 3421740.0 True False 3462059.759553236 2994168.858491273 2984241.6138419094 2839211.9976021755 2860985.0607216447 3068220.4390142034 3287002.4707948235 3432040.8575307787 3443935.447542487 3203361.623701004 1.0807583302297745 0.9346958633511879 0.9315968549295618 0.8863226607309767 0.8931196027179116 0.9578126978587372 1.0261103356158663 1.0713872677183323 1.0751004263962982 1.0 21.611155240765285 2.1960489726296473 3.177873366487592 1.0551333112956292 0.9394925549306047 0.43396736571072025 0.05370839217729289 0.21451185681757257 4.450859481270333 0.02250492624550467 0.016123043169418354 157.05398941549268 -2.1960489726296473 -0.11564075636502447 EAGSQKDENLALYVENQFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAGSQKDENLALYVENQFR 19 1 P02786;G3V0E5 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form 0 ; 286.7 3.0348999999999993e-40 393650000.0 355500.0 386770.0 362320.0 342960.0 381270.0 450920.0 442550.0 343950.0 535490.0 460820.0 False True 353586.02749976283 399643.40564259765 413331.50665810396 386378.7008355187 429822.4745356591 419748.961751505 421142.16579482635 369617.29554271087 403525.6646983776 431410.0730721491 0.8196054046253783 0.9263654944277604 0.9580942413205504 0.8956181715555368 0.9963199780543266 0.972969775050445 0.9761991944133266 0.8567655662525432 0.9353644939831803 1.0 18.718700337076985 4.731839761445332 3.7225485778879395 0.9416014193767679 0.8074690248480182 0.44290918719740724 0.042683569783901296 0.26140441408641574 6.895531898022284 0.010858756530761437 0.09589120373112789 53931.15998255768 -4.731839761445332 -0.1341323945287497 EAHEPLAVADAK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAHEPLAVADAK 12 0 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 0 ;;; 165.58 5.421e-05 2287310000.0 8412500.0 8484000.0 7700600.0 7355500.0 7575400.0 9448600.0 8827000.0 8543500.0 13220200.0 9012400.0 False True 8367208.034716606 8766384.811313689 8784777.545184914 8286705.545823594 8540082.287086412 8795440.521611972 8400004.287585426 9181059.35301396 9962258.85160413 8437220.916096173 0.9917019025487409 1.0390133076389585 1.0411932593142947 0.9821605512325234 1.0121913805520968 1.0424570612857134 0.9955889944235374 1.0881615456457616 1.180751215438552 1.0 23.008336446123383 1.634583531577574 5.324397080304719 1.103789173848896 1.0167447720708487 0.3515164111995587 0.04561845381859522 0.13179402962286493 8.071985668257172 0.022919725146047128 0.010929384923731798 43.11054682385834 -1.634583531577574 -0.0870444017780474 EAHEREMAEQFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAHEREMAEQFR 12 1 Q9UNN5;B3KT28;B1ANM7;Q9UNN5-2 Q9UNN5 FAF1 FAS-associated factor 1 0 61.435 0.077407 1721200000.0 524500.0 654250.0 605930.0 657620.0 576520.0 676990.0 648380.0 578480.0 701660.0 645640.0 False True 521676.1502774284 676026.3157475236 691239.6771620257 740874.6245727028 649936.4046982415 630191.2747630432 617015.3823478684 621649.1150619197 528745.2947623 604434.7024397866 0.863081070910877 1.1184439163052007 1.143613486075258 1.2257314505308508 1.0752797648361159 1.0426126630706192 1.0208139603125037 1.0284801857878898 0.8747765352122104 1.0 19.205226966839895 1.8948770320134647 1.2342747996017451 0.952098828929914 1.0934651316309474 0.23140337277816192 0.09333076318193553 0.6565227677686306 1.8502334011072838 0.07371557042364155 0.03178895970845887 78.50133311265695 -1.8948770320134647 0.14136630270103334 EAHLEKEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAHLEKEEK 9 1 A0A1W2PRI9;E9PNW5 A0A1W2PRI9 C4orf50 0 ;;; 66.962 0.037401 3622680000.0 7299600.0 4756220.0 3207120.0 2700290.0 2685950.0 3759690.0 3619230.0 3353680.0 7446600.0 3823710.0 False True 7260299.7646617945 4914527.907504292 3658654.619213236 3042146.4371330324 3027989.811627078 3499791.4796582875 3444154.0180987627 3603948.631241978 5611485.209327789 3579677.5541571667 2.02819937126187 1.3728968135124158 1.0220626198480787 0.8498381184082107 0.84588339754529 0.9776834440280506 0.9621408537478419 1.0067802411579292 1.5675951602990148 1.0 21.771398209336265 4.6564361998799075 2.126395294445137 1.009867384872005 2.205073971742688 0.7157107033155576 0.19227909108987545 0.28406163287872205 1.6523591886356324 0.04932137407470977 0.6062806002863848 45335.2693016329 -4.6564361998799075 1.1952065868706832 EAHLPPGAMAAVGLSWEECK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAHLPPGAMAAVGLSWEECK 20 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 148.26 1.1249e-07 2225180000.0 1840400.0 1608140.0 1373880.0 1455500.0 1417520.0 2016310.0 1790990.0 1758980.0 2561110.0 1859240.0 False True 1830491.4908876626 1661665.9677588395 1567310.3620209657 1639766.150764222 1598032.7697007065 1876927.235583204 1704352.9714537899 1890244.019519457 1929958.7576157602 1740581.7114245526 1.0516550179017592 0.9546612818302418 0.9004520452752686 0.9420793864495912 0.9181027005005246 1.0783333084932056 0.9791858435987404 1.08598407481394 1.108801008851354 1.0 20.731138112141817 2.736619342078658 24.999842380429065 1.0522584273028799 0.9498913327169646 0.46531968385805766 0.05194161936743253 155.29396866691857 1999872.9248353909 0.016593358200266622 0.016387353246411093 545.2797154013175 -2.736619342078658 -0.10236709458591531 EAHQLFLEPEVLDPESVELK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAHQLFLEPEVLDPESVELK 20 0 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ;;; 172.0 7.0035e-12 1595020000.0 2118320.0 2028780.0 1823210.0 1780320.0 1724040.0 2473770.0 2384750.0 2087400.0 3169490.0 2366430.0 False True 2106915.200487478 2096306.7158765902 2079902.1203745943 2005708.3294596754 1943586.2748143245 2302764.1025282103 2269390.5318703195 2243172.387602425 2388411.658490097 2215402.4113973477 0.9510304717771603 0.946241958161615 0.9388371655074224 0.9053471816863242 0.877306201715481 1.0394337799225197 1.0243694419556577 1.0125349580113356 1.0780938244910663 1.0 21.079137346748816 2.7254917556469893 24.974750281119466 1.0295104265448354 0.9248175133965167 0.7900032691239403 0.027610467103428446 357.79020562289327 683740.2554563334 0.009200506403513472 0.008719717746024008 531.485910041468 -2.7254917556469893 -0.10469291314831863 EAHS(ph)PGPLVKPFETASVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAHSPGPLVKPFETASVK 18 1 P35548;D6RIS4 P35548 MSX2 Homeobox protein MSX-2 1 EAHS(1)PGPLVKPFETASVK 155.76 9.953e-09 1876300000.0 855270.0 891160.0 822870.0 739380.0 769310.0 1137300.0 1080500.0 962910.0 1558900.0 1177100.0 True False 850665.3213494297 920821.7218824042 938722.943485742 832985.4321896601 867277.0684423842 1058681.12791623 1028232.0870891642 1034767.2337579071 1174729.9831897905 1101976.470233989 0.7719450862401835 0.8356092409912173 0.8518538905702928 0.7559012870871804 0.7870195887741871 0.9607111916749312 0.9330798931403987 0.9390102799002497 1.0660209314091373 1.0 20.071661988660512 2.732399251333294 20.603741062091323 0.9690896976696679 0.802797302104437 0.8035236113203496 0.04416558872468778 20.889785522839723 69854.92127511393 0.014486297619357822 0.014044992646138102 540.0068281648694 -2.732399251333294 -0.1662923955652309 EAIAELER ddPTM_BT-474_Trastuzumab_2h_R1 1 EAIAELER 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 80.438 0.059203 418260000.0 539360.0 828070.0 689000.0 765430.0 672940.0 724120.0 668400.0 583750.0 781170.0 661650.0 False True 536456.1456885298 855631.8093711153 786005.2111046427 862333.3595186931 758634.9201721259 674063.2887951292 636066.9384640409 627312.389222438 588661.1206417143 619422.930532936 0.8660579375499974 1.3813369947976435 1.2689314075415055 1.392156016531004 1.224744649862115 1.0882117137884804 1.0268701836995036 1.012736788227575 0.9503379542879451 1.0 19.240565265834622 2.564208107983987 2.3650621634937887 1.0001341747630477 1.2481285871622767 0.3812377915367804 0.1372333987607939 0.29807222076163914 3.3065282447731383 0.0501936280122781 0.04461773115935485 366.6132086060122 -2.564208107983987 0.24799441239922904 EAIDSYIK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAIDSYIK 8 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 116.73 0.0051555 458694000.0 993400.0 985360.0 938270.0 871840.0 823330.0 1013780.0 1064190.0 940140.0 1426670.0 1033060.0 False True 988051.6447771168 1018157.1119373003 1070370.2604109622 982214.8546082297 928176.195240759 943699.7747814273 1012711.0640994149 1010298.0207341877 1075086.2948985696 967129.2263528369 1.021633529268039 1.0527622205947553 1.106749988776019 1.0155983583623902 0.959723033850425 0.9757742285798094 1.0471310725645968 1.0446360147176459 1.1116263117730936 1.0 19.883349147760754 -0.6099969772561629 6.255856863457919 1.0000356323985078 1.0361055210219288 0.05504426527910433 0.046119346417916256 0.0 0.0 0.047171912131083925 0.01111852631647514 0.24547260008251323 0.6099969772561629 0.036069888623420976 EAIEGTYIDKK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAIEGTYIDKK 11 1 P62280;M0QZC5 P62280 RPS11 40S ribosomal protein S11 0 ;;; 143.97 5.9218e-05 13695000000.0 5570780.0 4971270.0 4391580.0 3936680.0 3974810.0 6116830.0 6142390.0 5569120.0 9114900.0 6352900.0 False True 5540787.539451839 5136735.7167538265 5009876.291702354 4435063.284363102 4480978.492955341 5693987.939569009 5845259.129491541 5984716.0138183525 6868655.028402473 5947452.483008665 0.9316236750577443 0.8636867182090175 0.8423566738893868 0.7457080652655365 0.7534282124585429 0.9573826702838263 0.9828172896195335 1.0062654608702037 1.1548902741174647 1.0 22.50384040965233 2.3844690737502687 2.140065986605439 1.0403453467384898 0.8269253191438862 0.6809510842019353 0.0672310851645729 0.19541305693337555 1.832469377707501 0.030142359850748923 0.023038656204218213 242.36453698431805 -2.3844690737502687 -0.21342002759460355 EAIESAIGGNAYQHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAIESAIGGNAYQHSK 16 0 P63172 P63172 DYNLT1 Dynein light chain Tctex-type 1 0 221.85 1.0184e-14 713490000.0 263410.0 260230.0 244370.0 220070.0 240160.0 318080.0 312880.0 237860.0 363550.0 305210.0 False True 261991.8298276025 268891.5982376427 278775.17189788294 247930.83943571453 270742.9524601568 296091.87827978085 297744.79908232996 255610.32102860653 273957.973820417 285731.23649657296 0.9169170057847168 0.9410647625880686 0.9756552182254199 0.8677064589635379 0.94754411796137 1.0362600950118106 1.042044974616911 0.8945830500113078 0.9587960251720775 1.0 18.124299236561093 2.9923932819582486 24.873144060645235 0.9789190883903589 0.9272500570288754 0.2744356164711703 0.046282714017378164 574.7135745803307 1879260.4503934828 0.014811952515875321 0.01699757513065706 982.6373824291237 -2.9923932819582486 -0.051669031361483486 EAIHDMNFSNEDMIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAIHDMNFSNEDMIR 15 0 Q96EI5;Q96EI5-2;A2RQR6;Q9H3H9 Q96EI5 TCEAL4;TCEAL2 Transcription elongation factor A protein-like 4;Transcription elongation factor A protein-like 2 0 169.09 1.2171e-06 137190000.0 91265.0 132410.0 122160.0 154970.0 108820.0 146110.0 117690.0 107990.0 121470.0 138600.0 False True 90773.63938049469 136817.18680646474 139359.06616624544 174589.186110568 122677.58197332706 136009.75960594448 111996.88508054017 116048.7621621089 91535.34611460897 129754.42933856999 0.6995802751645402 1.0544317254054256 1.0740216490229704 1.3455354626469829 0.9454596856437385 1.0482089921651334 0.8631449858895005 0.8943722596112793 0.7054506468967202 1.0 16.98542426215846 2.236821664595173 22.953173966964783 0.8611718287751761 1.0418710260390205 0.18944890372448753 0.16264387853051934 25.62350774172292 338193.02579146455 0.05938885939458381 0.046200405634417026 172.51293524420663 -2.236821664595173 0.18069919726384442 EAIHSQLLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAIHSQLLEK 10 0 O60925;E5RGS4 O60925 PFDN1 Prefoldin subunit 1 0 ;;; 154.05 1.5167e-05 2037110000.0 3205820.0 3169790.0 2867740.0 2930090.0 2874240.0 3720970.0 3530550.0 3261840.0 4696220.0 3843220.0 False True 3188560.2213200876 3275294.543971483 3271492.865157079 3301039.093571101 3240257.427044805 3463748.102121211 3359763.8084892626 3505255.0640879096 3538899.5071239704 3597942.409253823 0.886217692956726 0.9103243385851599 0.9092677127746337 0.91747969202645 0.9005862402663642 0.9627024860688522 0.93380144158173 0.9742387913359803 0.9835898145623466 1.0 21.778740663487536 2.0894581134837065 0.542959840114168 1.002357474610089 0.8965948589709348 0.8704563295267261 0.01344632541527847 0.26867876359523646 0.1653297024091257 0.011976820991825022 0.008943262619422505 122.87346727611278 -2.0894581134837065 -0.10576261563915412 EAIIPGSVYDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAIIPGSVYDR 11 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 116.52 0.0022758 77775000.0 78563.0 101170.0 77846.0 89309.0 92878.0 94378.0 89028.0 93883.0 107660.0 108530.0 False True 78140.02553716995 104537.38229144343 88806.04015043828 100615.51024294185 104705.46276896422 87853.87100191502 84721.37552001307 100889.02618821428 81128.63557008968 101603.52248279234 0.7690680758671906 1.0288755718006526 0.8740448951017279 0.9902758072190083 1.030529849855326 0.8646734764219816 0.8338428968775325 0.99296779996285 0.798482509145583 1.0 16.632590894070155 4.374447880843731 0.003834231755283896 1.8318707063314852 5.7091518522445466e-08 0.018259606855895782 0.09443943457101407 356733.53583476087 239.06823927765265 55699.29657911225 58541.60152756841 23683.60890598587 -4.374447880843731 -1.8318706492399666 EAILAIHK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAILAIHK 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ;; 96.711 0.008747399999999999 1636760000.0 2844290.0 2867320.0 2740750.0 2116000.0 1862987.0 2617790.0 2588520.0 2351360.0 3495770.0 2703320.0 False True 2828976.658670326 2962757.0128684584 3126623.7769739414 2383885.383041633 2100227.351660936 2436828.338914824 2463303.3984933305 2526830.423164148 2634284.324418097 2530791.803171308 1.1178227522016495 1.1706838188569522 1.2354330265555638 0.9419523882029379 0.8298696672832447 0.9628719106254655 0.9733330870625516 0.9984347270280408 1.040893336669221 1.0 21.27115739763932 3.731625118212595 24.982620083288275 0.9611882007108172 1.1742502635490721 0.7330051268429719 0.05826799964440231 274.2335516278587 987827.5184496815 0.01666608373600735 0.02645755464902469 5390.451193875464 -3.731625118212595 0.2130620628382549 EAILEYILHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAILEYILHQK 11 0 Q9Y314;A0A075B6F9;M0R3B2;A0A075B797;M0R1K2;M0QX85 Q9Y314 NOSIP Nitric oxide synthase-interacting protein 0 ; 195.51 6.364200000000001e-08 398580000.0 1015910.0 1065690.0 1008230.0 1017330.0 1015350.0 1128880.0 1093410.0 1121950.0 1477630.0 1148860.0 False True 1010440.453438211 1101160.8474267921 1150180.0203077404 1146123.8736908038 1144648.8040490502 1050843.182697683 1040517.581068173 1205675.6061466606 1113487.8857275844 1075538.7712114684 0.9394737600208203 1.0238225500569018 1.069398938554486 1.0656276690052089 1.0642561985559456 0.9770388672404914 0.9674384679746616 1.1209968793487644 1.0352838182424338 1.0 20.036628101548025 4.712286113408468 3.618703098778735 1.0422322136444677 0.930571057616089 0.2973781721059817 0.04437136216774057 0.31113118873333134 7.4498267965810605 0.011284949046930776 0.08999305291300029 51556.818928840046 -4.712286113408468 -0.11166115602837867 EAIVAEIEDFHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAIVAEIEDFHAR 13 0 Q13164-2;Q13164;Q13164-4;Q13164-3 Q13164-2 MAPK7 Mitogen-activated protein kinase 7 0 156.8 1.2918e-06 0.0 14718.0 24016.0 19015.0 20343.0 19139.0 21699.0 22423.0 16000.0 24233.0 23187.0 False True 14638.759923323534 24815.358042021442 21692.14671865713 22918.42171418522 21576.238204259425 20198.99920395173 21338.31382582168 17194.001246353753 18261.101855563673 21707.18580861055 0.674373917116276 1.1431863282884869 0.9993071838014372 1.0557988454263016 0.9939675457930994 0.9305213205453574 0.9830069182601021 0.7920879932549083 0.8412468579100694 1.0 14.40588508186697 1.7582468316264601 24.9999999996682 0.8579630092959041 0.9793565246660648 0.09080767840320181 0.12389559863986484 14.936760343751645 18986.099983325596 0.053889842448348484 0.029885429632598756 57.31216726123532 -1.7582468316264601 0.12139351537016074 EAIVTSEELGQDLEHVEVLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAIVTSEELGQDLEHVEVLQK 21 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 262.91 1.0133e-36 79554000.0 70268.0 57299.0 57261.0 43507.0 50341.0 64218.0 59123.0 58411.0 67554.0 64409.0 False True 69889.68489550878 59206.1625770231 65322.85107846575 49014.98173912682 56751.62795551611 59778.760812911736 56262.99461820694 62769.92542504808 50906.22187722308 60298.36247668077 1.1590643928769586 0.9818867402895052 1.0833271152882153 0.8128741764435548 0.9411802514116981 0.9913828229751682 0.93307665925365 1.0409888900270408 0.8442388779116528 1.0 15.879831202921075 5.288781389507947 1.1076447489351648 0.9529590355371018 1.5764119979464226 0.3971653779613239 0.07648857399514733 5.095735277395138 2.2059985862003364 0.02137798444608291 4.979171654526653 194438.10935745217 -5.288781389507947 0.6234529624093208 EAKPDELMDSK ddPTM_BT-474_Trastuzumab_2h_R1 5 EAKPDELMDSK 11 1 Q9P0L0-2;Q9P0L0 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 ;;;; 154.07 2.9347e-05 2497610000.0 5134270.0 4760950.0 4473820.0 3442580.0 4206290.0 6783010.0 5128880.0 4840370.0 8017700.0 5428370.0 False True 5106627.66079102 4919415.342694944 5103694.968859461 3878410.275024325 4741936.098865892 6314116.484188057 4880776.480175726 5201582.988300837 6041845.26667573 5081926.779138626 1.004860534739263 0.9680216887203504 1.0042834520580253 0.7631771262319734 0.9330980757793678 1.2424650646498068 0.9604184972147525 1.023545441397031 1.188888689124287 1.0 22.276944158384353 2.9304306093614083 24.99978903066395 1.071050548330896 0.9305987149107672 0.3445353950384201 0.1015814235458026 203.1365343009985 72996.72128624572 0.03116102866382182 0.03305127410638934 851.9823725917951 -2.9304306093614083 -0.1404518334201289 EAKPEDLMDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAKPEDLMDSK 11 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 0 101.72 0.0028033000000000003 956810000.0 1093900.0 988180.0 1015000.0 824100.0 826800.0 1337900.0 1284400.0 1138500.0 1885200.0 1260300.0 False True 1088010.5639437167 1021070.9739325764 1157903.1774618449 928430.9755031235 932088.0791724588 1245414.1220778374 1222268.6651155218 1223460.6511858592 1420617.7203857822 1179866.5750028857 0.9221471198478995 0.8654122386084876 0.9813848463831708 0.7868948872467658 0.7899944781215446 1.0555550504299958 1.0359380382587178 1.036948310178943 1.2040494666799997 1.0 20.170192291228922 2.7191909163212347 22.261819442007983 1.0635417891578436 0.8706218405033029 0.6440418781062606 0.07333099723371186 130.8018131657621 150331.22556873626 0.023962760717978388 0.02264173148717951 523.8306625007649 -2.7191909163212347 -0.19291994865454065 EALAAVLTYAKPDEFSALCDLLGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EALAAVLTYAKPDEFSALCDLLGTR 25 1 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;H0YAB3;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 0 ; 193.19 1.5870999999999995e-17 312490000.0 140671.0 163068.0 142702.0 141781.0 114292.0 140088.0 146660.0 136264.0 222536.0 169980.0 False True 139913.64296601727 168495.61980331226 162793.20121198072 159730.46006286656 128846.40873824223 130404.04629168128 139565.49550439318 146432.71161457192 167694.98462962575 159131.73087280028 0.8792315787594573 1.0588436314941918 1.0230090524315807 1.003762475194497 0.809683951978338 0.8194723049667444 0.8770437846613565 0.920198069935033 1.0538123585400474 1.0 17.27986201223314 5.0872993218584694 13.141341031534406 0.9418767998651196 0.00016431150817142426 0.04760357812651095 0.08782510659374786 2505575.547513893 8182402.235543797 0.02272689789728352 65202689.55770217 122264.20319099864 -5.0872993218584694 -0.9417124883569482 EALAEAALES(ph)PRPALVR ddPTM_BT-474_Trastuzumab_2h_R1 9 EALAEAALESPRPALVR 17 1 O14745;O14745-2;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR 291.03 3.3286e-46 58437110000.0 8677780.0 10194330.0 9015170.0 9137310.0 9044530.0 10235410.0 9018320.0 8754500.0 10509810.0 10057140.0 True False 8631059.796671987 10533642.111447377 10284427.574737635 10294092.5091305 10196297.28437069 9527860.1982635 8582069.40827205 9407805.244450254 7919808.149738848 9415284.714849243 0.9167072540100224 1.1187810491629984 1.0923119041230511 1.09333841948457 1.082951561548604 1.011956673305557 0.9115039712752293 0.999205603375202 0.8411650193910954 1.0 23.166573291406422 2.4622818159684243 3.9928651275250493 0.9438840106279602 1.0667685420873922 0.4249044222506895 0.06693425974394326 0.20179193619635158 7.337732363084984 0.022745917978089638 0.019563604992346623 289.9224299296058 -2.4622818159684243 0.12288453145943201 EALAEAALESPRPALVR ddPTM_BT-474_Trastuzumab_2h_R1 5 EALAEAALESPRPALVR 17 1 O14745;O14745-2;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ;;;; 253.1 4.8221000000000005e-27 5532720000.0 2008686.0 2655795.0 2610388.0 2687886.0 2528711.0 2613896.0 2647674.0 2372712.0 2696697.0 2676170.0 False True 1997871.4577619922 2744191.5311130215 2977907.940500759 3028172.0920048384 2850727.3570056455 2433203.521969333 2519595.893523107 2549775.8178274077 2032132.1582384754 2505374.539415591 0.7974342463893722 1.0953218722152167 1.1886078882223303 1.2086704180809613 1.1378447861414813 0.9711935216428387 1.0056763385608738 1.0177224114451862 0.8111091281036547 1.0 21.256594863669257 2.7263210382995533 22.794589309196752 0.9705513432823337 1.0986798735613605 0.20824887639314926 0.11925912892521107 384.17668898846136 715474.9157720567 0.03963107645387093 0.03767711819614003 532.5017486908145 -2.7263210382995533 0.12812853027902682 EALAPNSLS(ph)PSPQGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EALAPNSLSPSPQGHR 16 0 B4DF95;Q15735;B5MCL8;B5MBZ3;A0A087WVS7;Q15735-3;Q15735-2 B4DF95 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 1 EALAPNS(0.002)LS(0.997)PS(0.001)PQGHR;EALAPNSLS(0.999)PS(0.001)PQGHR 135.91 1.3071e-05 430250000.0 89513.0 128018.0 112995.0 123421.0 111590.0 117674.0 127767.0 103263.0 115548.0 130653.0 True False 89031.07195382922 132279.00174148486 128903.71382985343 139046.08594535987 125800.3250542508 109539.47335480058 121586.4220926619 110969.00941888917 87072.74366387447 122314.61368233903 0.7278858124430669 1.0814652293717262 1.0538700973591497 1.1367904599402474 1.028497914247307 0.8955550776564072 0.9940465691894487 0.9072424469825388 0.7118752293165022 1.0 16.90023725628679 1.590817854883399 3.8470174568590925 0.8435662192457739 0.9979601207606008 0.15199315341690967 0.12500040451391087 0.2764516123143585 9.404172363489138 0.07437405583160589 0.03205216531649789 38.977847749245484 -1.590817854883399 0.1543939015148269 EALASLPSS(ph)PGLLQSLLER ddPTM_BT-474_Trastuzumab_2h_R1 2 EALASLPSSPGLLQSLLER 19 0 P41229-4;P41229-3;P41229-2;P41229-5;P41229 P41229-4 KDM5C Lysine-specific demethylase 5C 1 EALASLPS(0.165)S(0.835)PGLLQSLLER;EALASLPS(0.026)S(0.974)PGLLQSLLER 202.5 5.767100000000001e-16 239980000.0 402330.0 451070.0 409490.0 374890.0 381720.0 497580.0 499030.0 403790.0 469160.0 478430.0 True False 400163.89998306514 466083.5922724269 467142.63264911453 422351.035561662 430329.7793683004 463183.4657773305 474890.0124202728 433922.8602040742 353541.8044219141 447896.1877954698 0.8934300199174692 1.0406062944328123 1.042970771750425 0.9429663548610667 0.9607801787426887 1.034131297381887 1.060268038354302 0.9688023073824944 0.7893387219079384 1.0 18.772804861389574 1.444731721920845 12.874830326557884 0.8894131559132735 0.9987206707878423 0.25600087707937735 0.06828844355477666 0.5705948796424193 222.4770731126596 0.03622630183921389 0.016068173144280894 27.844006208214118 -1.444731721920845 0.1093075148745688 EALDLGITGPEGIEISRPEELEAEATHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EALDLGITGPEGIEISRPEELEAEATHR 28 1 Q9BPU6 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 0 73.34100000000002 0.0059828 66435000.0 11058.0 16671.0 12130.0 14372.0 12541.0 16117.0 13535.0 14899.0 18584.0 18995.0 False True 10998.464956659302 17225.88415716768 13837.798564149938 16191.493726405646 14138.022013669322 15002.869725337112 12880.260341278874 16010.839035589042 14004.222212841794 17782.722837562324 0.6184916144240475 0.968686534369279 0.7781597166278974 0.9105182527056241 0.7950425895299721 0.8436767452533565 0.7243131695260969 0.9003592521708462 0.7875184436469297 1.0 14.118188621798907 -4.999970025180575 0.46878842080371047 5.567276200830075 0.8206856856419927 0.2511845090532968 0.09530648746547529 2222.1043624985773 11.903286997940913 10582.748304095425 0.0429727758468245 1.0000690219542781e-05 4.999970025180575 -4.746590515188082 EALEALVPVTIEVEVPFDLHR ddPTM_BT-474_Trastuzumab_2h_R1 4 EALEALVPVTIEVEVPFDLHR 21 0 Q00341;A0A024R4E5;Q00341-2;H0Y394 Q00341 HDLBP Vigilin 0 ;;; 175.56 1.5461e-12 2481875000.0 866269.0 1016735.0 942181.0 1009358.0 973830.0 1017557.0 1010392.0 901863.0 1117407.0 1036890.0 False True 861605.1039555332 1050576.4098457142 1074831.8952159397 1137142.6193081937 1097841.4781573734 947215.6796615286 961515.4788877324 969164.5966275203 842037.0173366818 970714.7924738087 0.8875986135534043 1.0822709388906941 1.1072581808265174 1.1714487387281423 1.1309619330715974 0.9757919494021574 0.9905231550426542 0.9984030367536298 0.867440183115785 1.0 19.888687951415207 2.717477971311861 20.848723955227932 0.9710147125973725 1.083310690401143 0.3243033139519874 0.0785099305060124 119.33018316167758 118004.8173462352 0.02611469729056007 0.024670614622063297 521.7686379342452 -2.717477971311861 0.11229597780377043 EALEAYRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EALEAYRR 8 1 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 0 82.279 0.033166 166900000.0 97332.0 163370.0 162650.0 167570.0 146100.0 131980.0 149630.0 113340.0 128860.0 148860.0 False True 96807.97532660187 168807.67169074935 185549.70622085608 188784.3448186609 164704.96899745546 122856.53324750203 142391.82525789127 121798.00632885844 97104.17963553558 139359.62735454214 0.6946629893054648 1.2113097235922496 1.33144519501909 1.3546559244046936 1.181870044603612 0.8815790884324417 1.0217580798751347 0.8739834386826715 0.6967884564479689 1.0 17.088453145747472 2.740114359505511 23.900586505076603 0.8966623712845605 1.1788468228826745 0.31763530679747887 0.18886796879253193 89.47835603725483 1376415.412850906 0.060487837393820645 0.061083177720426214 549.6855993842386 -2.740114359505511 0.282184451598114 EALEEFYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EALEEFYGR 9 0 Q9H2P9-6;Q9H2P9-4;Q9H2P9;Q9H2P9-5;Q9H2P9-3;Q9H2P9-2 Q9H2P9-6 DPH5 Diphthine synthase 0 ;;; 141.52 0.00024782 573320000.0 409878.0 501161.0 460027.0 469743.0 454049.0 454316.0 496554.0 444671.0 541040.0 459136.0 False True 407671.2623897271 517841.84092677804 524794.8029736351 529212.4156361648 511869.4487907305 422910.2042648294 472533.78599951154 477854.6080135859 407707.94156456756 429833.547393894 0.9484398434265121 1.2047497085010779 1.2209256493717087 1.231203145600921 1.1908550458525748 0.9838929670077144 1.0993413354181207 1.1117201319228023 0.948525176865614 1.0 18.713418560204047 2.751343417954242 24.596792477137495 1.047708397155162 1.1691888218166833 0.3351640946819995 0.08940686207247858 792.2035209639357 1524364.615409331 0.02768675668008162 0.02918227838934004 564.0835280369489 -2.751343417954242 0.12148042466152131 EALEHK ddPTM_BT-474_Trastuzumab_2h_R1 3 EALEHK 6 0 Q9NYL9 Q9NYL9 TMOD3 Tropomodulin-3 0 ;; 79.454 0.067107 1568710000.0 1241810.0 1197620.0 1077680.0 1059190.0 1033150.0 1101170.0 1465490.0 1199320.0 1870780.0 1536410.0 False True 1235124.2329380624 1237482.0577234218 1229407.976637518 1193283.3453988028 1164715.528540187 1025048.7097753583 1394598.649984544 1288819.3484235627 1409751.3361676813 1438354.9984132198 0.8587061151806336 0.8603453661221332 0.854731952816787 0.8296167126441123 0.8097552619659893 0.7126534902066477 0.9695788950037039 0.8960370352558141 0.9801136282231481 1.0 20.455988358622253 2.2066777422655974 24.99999731532867 0.9472908384641647 0.824176107444514 0.668170828056114 0.04805038469118544 136.2984477481741 106873.54000950651 0.018598827047086344 0.013737317751721819 160.94509377761796 -2.2066777422655974 -0.12311473101965076 EALEHLCTYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EALEHLCTYEK 11 0 A0A0B4J1W3;Q9BXJ9;Q9BXJ9-4 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 ; 132.76 0.0001757 1320680000.0 721380.0 761880.0 708940.0 642520.0 600280.0 822220.0 754700.0 688520.0 1027350.0 838510.0 False True 717496.1702328532 787238.7152338139 808752.589783055 723862.96612094 676722.0998616869 765381.8666976902 718192.2777660264 739900.858633717 774173.3582847074 784995.5739154709 0.9140130136709712 1.002857520975761 1.030263885118596 0.9221236274115431 0.8620712298876695 0.9750142448320446 0.9148997798596022 0.9425541789276258 0.9862136603181296 1.0 19.582324994035723 5.080668567268012 0.0012317076716835227 1.8972047619091605 8.751806828530603e-06 0.014692356870202206 0.049146877194723326 6063298.87888672 1078.4879064847541 822579.5702193491 838672.3227047264 120411.666551975 -5.080668567268012 -1.897196010102332 EALEVDWSSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EALEVDWSSEK 11 0 Q9UBE0;M0QX65;B3KNJ4;Q9UBE0-2;Q9UBE0-3;M0QZS6 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ; 169.65 3.8697e-05 177164000.0 334660.0 317400.0 279560.0 277250.0 289400.0 337810.0 320790.0 321010.0 439100.0 353680.0 False True 332858.22774422175 327964.46712764807 318919.6180209199 312349.82157291734 326253.3745918114 314457.98981920525 305272.1621631955 344965.3962557514 330889.68863855116 331107.8395993177 1.0052864593813975 0.9905064994067386 0.9631895711284062 0.9433477079579271 0.9853387192119014 0.9497147219459954 0.9219720153186749 1.0418520946927836 0.9993411483067555 1.0 18.33694164408795 1.7145023738864205 13.33145558138158 1.0151179471796417 0.9657821370089839 0.42981420053476926 0.025370286684885716 0.11498831867289423 51.633781686274126 0.012141475076876162 0.006672648152084102 51.820592455218566 -1.7145023738864205 -0.0493358101706578 EALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_BT-474_Trastuzumab_2h_R1 6 EALGLGPPAAQLTPPPAPVGLR 22 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR 265.19 1.7017e-36 2637417000.0 672478.0 777337.0 697659.0 754267.0 663368.0 702718.0 658861.0 563066.0 670804.0 665410.0 True False 668857.4531673294 803210.1921348607 795883.323039264 849757.1248632622 747843.9827098161 654140.7586802412 626989.37633656 605084.8441112132 505493.34251308243 622942.9641138383 1.0737057671384191 1.2893799888685795 1.2776182875288435 1.364101007340337 1.2005015319077479 1.0500813017621653 1.006495638374338 0.9713326563884882 0.8114600720022054 1.0 19.248740552361888 2.549343347882224 1.6838733667931363 0.9390484795465766 1.258655545643868 0.7342595220037149 0.08451692443019941 0.18718015822667272 1.0703341029812885 0.03690648848524787 0.030765692720240656 354.27731769100154 -2.549343347882224 0.3196070660972914 EALLDESRPLFER ddPTM_BT-474_Trastuzumab_2h_R1 2 EALLDESRPLFER 13 1 A0A5F9ZGM7;Q9BU89 A0A5F9ZGM7 DOHH Deoxyhypusine hydroxylase 0 ; 137.46 5.518e-05 374200000.0 280580.0 403160.0 364880.0 404930.0 387960.0 333680.0 312410.0 329440.0 343660.0 353640.0 False True 279069.3884553683 416578.93688463356 416251.9324061853 456194.09648159135 437364.4063809232 310613.486998231 297297.53477790405 354024.4856624236 258969.59780807205 331070.3924335636 0.8429306722478047 1.2582790439898037 1.2572913251060807 1.3779368584677547 1.321061672612992 0.938209800988357 0.8979888917054496 1.0693329689197932 0.7822191404809473 1.0 18.33677847097904 2.727230937543524 24.110330636897654 0.9490870933683586 1.2258892174962408 0.44863379747865295 0.1511602433106734 429.9738595210951 915011.7404793147 0.04917407006851938 0.04677576663200429 533.6185735190585 -2.727230937543524 0.2768021241278822 EALLS(ph)TPINPNNFPAKLWRLVNSPRY(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 EALLSTPINPNNFPAKLWRLVNSPRYR 27 3 Q4G112-2;Q4G112 Q4G112-2 HSF5 Heat shock factor protein 5 2 EALLS(0.496)T(0.503)PINPNNFPAKLWRLVNS(0.197)PRY(0.804)R 66.479 0.021201 729470000.0 314740.0 182850.0 125990.0 92197.0 110090.0 161900.0 133680.0 91533.0 223460.0 120740.0 True False 313045.47481090156 188936.051714841 143728.2968752887 103869.13074682851 124109.30894544737 150708.23407160622 127213.38769280823 98363.65725515621 168391.27721059122 113034.26982928527 2.7694740301652905 1.6714935390850012 1.2715462053442763 0.9189171647120931 1.0979794812041395 1.3332968337763373 1.1254408763372168 0.8702109316379363 1.4897364973022003 1.0 16.78640071094661 4.757480243157814 1.636329368735262 1.106800537200374 3.4293639848539046 0.8888260737878708 0.17632185299922626 0.30614486159107995 0.7605957268846483 0.04637844948015216 1.1440788674100215 57211.09276985297 -4.757480243157814 2.322563447653531 EALLSSAVDHGSDEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EALLSSAVDHGSDEVK 16 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ;; 229.68 2.9634e-15 2036140000.0 1377910.0 1577650.0 1465580.0 1371890.0 1334910.0 1742830.0 1709190.0 1509920.0 2033720.0 1845970.0 False True 1370491.4856601926 1630161.1265404345 1671920.9249502753 1545571.1333369506 1504902.8758685386 1622352.2642805271 1626509.9499601352 1622597.897618403 1532536.956451818 1728158.6141855717 0.7930357054095195 0.9432936960527085 0.967458027999473 0.8943456466612186 0.8708129355231397 0.9387750933065204 0.9411809405739412 0.9389172291821626 0.8868034125293852 1.0 20.720804206615643 -4.999999999999962 0.011720981859754315 2.0473318024706355 7.999926221200911e-14 0.29614989716311824 0.04640044396280247 13313.624385065255 11.848791025015379 1233.6785535926106 866.1272736268362 1.000000000000088e-05 4.999999999999962 -2.0473318024705556 EALNIIGDISTSTVSTPVPPPVDDT(ph)WLQSASSHSPTPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQR 39 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4;K7ENE7 P50570-2 DNM2 Dynamin-2 1 EALNIIGDISTSTVSTPVPPPVDDT(0.241)WLQS(0.177)AS(0.177)S(0.177)HS(0.177)PT(0.051)PQR;EALNIIGDISTST(0.001)VST(0.001)PVPPPVDDT(0.166)WLQS(0.166)AS(0.166)S(0.166)HS(0.166)PT(0.166)PQR;EALNIIGDISTSTVSTPVPPPVDDT(0.265)WLQS(0.161)AS(0.161)S(0.126)HS(0.126)PT(0.161)PQR;EALNIIGDISTSTVSTPVPPPVDDT(0.217)WLQS(0.217)AS(0.217)S(0.155)HS(0.155)PT(0.039)PQR 139.75 8.787600000000001e-13 1536109000.0 400816.0 536451.0 502306.0 549988.0 561048.0 566930.0 561672.0 470026.0 546004.0 629185.0 True False 398658.05119084375 554306.4472435231 573026.3186779795 619616.4244084599 632494.1372079692 527739.463509671 534501.7795645946 505101.72686366667 411448.63027875946 589029.8746276207 0.6768044684369732 0.9410498025994871 0.9728306548801816 1.0519269923281493 1.0737895724012747 0.8959468547215931 0.9074272844013248 0.8575146161864665 0.6985191210189017 1.0 19.167981281470677 1.952436331227987 2.096272802971438 0.836085911489402 0.9491836102822853 0.07766675680440138 0.12223163239616153 0.684195660938219 5.551286364776761 0.07254788836523376 0.036633432716963635 89.62647814226308 -1.952436331227987 0.11309769879288323 EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPT(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQR 39 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4;K7ENE7 P50570-2 DNM2 Dynamin-2 1 EALNIIGDISTSTVSTPVPPPVDDT(0.159)WLQS(0.159)AS(0.159)S(0.159)HS(0.159)PT(0.206)PQR 138.59 1.4438e-09 538770000.0 269430.0 358990.0 355520.0 378440.0 347930.0 426800.0 406670.0 392490.0 407060.0 462870.0 True False 267979.4188164871 370938.7651359624 405574.12576476356 426350.46519767307 392236.82315732137 397296.3205791327 386997.81846973667 421779.59682383685 306745.5173245473 433329.24031705566 0.6184198846595571 0.8560206204052978 0.9359491306610548 0.9838949822211942 0.9051704493108564 0.9168463228755147 0.8930803242970183 0.9733467248026737 0.7078809569834467 1.0 18.725104064928654 4.723489098469042 2.834097785593826 0.9172326800984155 0.5700115382335651 0.5682701755724198 0.07713568951407304 0.2665815157048262 3.0602131478407117 0.017780451047274094 0.21020102845288657 52904.07172201205 -4.723489098469042 -0.3472211418648504 EALNSCNKR ddPTM_BT-474_Trastuzumab_2h_R1 7 EALNSCNKR 9 1 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;;;; 185.27 6.9016e-05 16431810000.0 5956080.0 6610240.0 6195250.0 5622240.0 5860430.0 6285480.0 7161510.0 6322460.0 9108110.0 7042570.0 False True 5924013.1270627035 6830257.842425532 7067487.349921666 6334015.007538749 6606721.023009976 5850979.562028414 6815080.401675069 6794274.070001363 6863538.332921135 6593107.153152475 0.8985161304757733 1.0359694880978332 1.0719509308357544 0.9607025732184798 1.0020648640377385 0.887438870037291 1.033667471704363 1.0305117014142111 1.0410172584013524 1.0 22.652527097986447 EALNVFGNDYDTEDGTGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EALNVFGNDYDTEDGTGVR 19 0 Q14376;Q14376-2;Q5QPP4;Q5QPP3;Q5QPP9 Q14376 GALE UDP-glucose 4-epimerase 0 ; 167.69 6.322200000000001e-11 92381000.0 60027.0 72185.0 65581.0 73011.0 69390.0 74478.0 78359.0 62004.0 82967.0 78738.0 False True 59703.82130162667 74587.63408824602 74814.23475972938 82254.18511401344 78226.40519324742 69329.51116235391 74568.47580955089 66631.05332993242 62520.89455084192 73712.87342900663 0.8099510780722423 1.0118671355293438 1.0149412345427489 1.115872727349762 1.0612312551970695 0.940534643912988 1.0116072314202795 0.9039269564509004 0.8481679202352113 1.0 16.169628977300203 1.716958982597185 6.035814886660391 0.9072645049122585 1.0016676586388558 0.14728581069338242 0.08344900190697405 0.23029266092956147 20.81739864343962 0.04279936459423929 0.02189697623196371 52.114548864245066 -1.716958982597185 0.09440315372659724 EALPESGELLDVWTELQDIHDAHGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EALPESGELLDVWTELQDIHDAHGLR 26 0 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9 Q6ULP2-7 AFTPH Aftiphilin 0 ;;; 155.49 2.64e-08 188996000.0 53552.4 67631.0 57596.8 59641.8 64083.0 64581.0 61629.8 35038.7 64539.0 52906.3 False True 53264.079828630995 69882.05695119723 65705.92879963976 67192.44576478841 72243.59020030072 60116.66747732186 58648.531125301015 37653.465716913466 48634.22822829296 49529.77463863772 1.075395158109203 1.4109100528126144 1.326594543969178 1.3566071369194603 1.4585891158879647 1.2137480518723258 1.1841065612188317 0.7602187975137756 0.9819190291722799 1.0 15.596008436248418 1.9808736403041047 3.1147141753605427 0.8949816711175022 1.3207146086992263 0.6811103816275887 0.11891793078879631 0.12903902413880378 2.415826546361476 0.05612565076014071 0.0325346963061307 95.69156124081731 -1.9808736403041047 0.42573293758172415 EALPWGLEPQDVQSSDEMRS(ph)PEGYLR ddPTM_BT-474_Trastuzumab_2h_R1 8 EALPWGLEPQDVQSSDEMRSPEGYLR 26 1 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 1 EALPWGLEPQDVQSSDEMRS(1)PEGYLR;EALPWGLEPQDVQSSDEMRS(1)PEGYLR;EALPWGLEPQDVQSSDEMRS(1)PEGYLR;EALPWGLEPQDVQS(0.001)SDEMRS(0.999)PEGYLR;EALPWGLEPQDVQSSDEMRS(1)PEGYLR;EALPWGLEPQDVQSSDEMRS(1)PEGYLR;EALPWGLEPQDVQS(0.01)S(0.01)DEMRS(0.979)PEGYLR;EALPWGLEPQDVQS(0.04)S(0.04)DEMRS(0.92)PEGYLR 291.62 1.7965999999999988e-70 1710537000.0 309771.0 348055.0 360213.0 361822.0 356584.0 364618.0 366462.0 327233.0 390975.0 387337.0 True False 308103.22735479334 359639.8002713094 410927.85937247693 407628.62810155476 401992.8587610447 339412.81587844907 348734.8330392121 351652.78811550484 294624.4500465896 362616.8210441106 0.849666119921431 0.99179017464157 1.1332288948683094 1.1241304993183665 1.1085885580364299 0.9360095731388068 0.9617171978814248 0.9697641358803043 0.8124952648314954 1.0 18.46808632470931 2.717387148145106 23.72719116218015 0.9392746801229931 1.048409014651631 0.2548876953499163 0.08969876647622875 621.5750514512249 696541.40816164 0.03052497244548421 0.028814484416637885 521.659532874939 -2.717387148145106 0.10913433452863786 EALQDVEDENQ ddPTM_BT-474_Trastuzumab_2h_R1 2 EALQDVEDENQ 11 0 P62258;P62258-2;I3L0W5 P62258 YWHAE 14-3-3 protein epsilon 0 ; 265.77 1.2969999999999996e-20 1393250000.0 1393590.0 1504710.0 1307860.0 1341210.0 1335570.0 1539190.0 1336120.0 1356980.0 1519670.0 1575960.0 False True 1386087.066282405 1554793.362733598 1491995.319877093 1511007.0484826423 1505646.922956412 1432789.4181635324 1271486.7711259348 1458244.7382048196 1145167.6910347221 1475380.8835527617 0.9394774473047702 1.0538250698962621 1.0112611167119931 1.0241470967443278 1.020514051483959 0.971131884746488 0.8618023896745607 0.9883852735663229 0.7761844441667997 1.0 20.492656017274896 2.4563006141836103 5.708898726724123 0.9127698147751864 1.0118026187597176 0.36001803691287615 0.06468097368523326 0.18358607796185886 19.048340292333595 0.020953710559725933 0.017879814765192802 285.95692229561064 -2.4563006141836103 0.09903280398453118 EALSVALEEAQAWR ddPTM_BT-474_Trastuzumab_2h_R1 3 EALSVALEEAQAWR 14 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ;; 185.25 2.7904e-06 160058000.0 87487.0 121177.0 105500.0 115254.0 110594.0 114273.0 109743.0 109070.0 132070.0 114775.0 False True 87015.97971271952 125210.30319195667 120353.48297756114 129845.14458274128 124677.49035800532 106373.5764797077 104434.3118310282 117209.35724623765 99523.11814733189 107449.96123617873 0.80982793024425 1.1652894217126808 1.1200886588783407 1.2084243036378317 1.1603307150940696 0.9899824556092198 0.9719343834985475 1.0908273571975278 0.9262275854020704 1.0 16.713305436733613 2.7234833049016105 24.112811612917408 1.0067713995535204 1.1047603053428576 0.156341224579585 0.10945875365679437 961.4867672319675 1537682.2098260242 0.035179675104676636 0.033304973224609465 529.0336597677401 -2.7234833049016105 0.09798890578933728 EALTYDGALLGDR ddPTM_BT-474_Trastuzumab_2h_R1 6 EALTYDGALLGDR 13 0 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ;;;;; 272.94 9.244699999999999e-32 3355930000.0 3014470.0 3610030.0 3375790.0 3225880.0 3152980.0 3603800.0 3547920.0 3306010.0 3713460.0 3505870.0 False True 2998240.4284591004 3730187.666240782 3851071.8891073167 3634276.0772430752 3554493.3138233894 3354677.788432706 3376293.5552294147 3552721.25377862 2798327.5408146535 3282122.3750736816 0.9135065929379893 1.136516936287923 1.1733480501380948 1.1072945070067621 1.0829862228228444 1.0221062486609434 1.0286921599483685 1.0824463099730899 0.8525969543569601 1.0 21.646197600564747 1.2548631270969697 24.977881504786566 0.9262984848221255 1.0728016083627308 0.3633227515695924 0.07504008775678064 207.24643138391932 317535.0700506018 0.04976213259807908 0.018050393477527668 17.983040695904407 -1.2548631270969697 0.14650312354060524 EALVVLHEDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EALVVLHEDVR 11 0 E9PF16;Q96CM8-3;Q96CM8;Q96CM8-2;D6RF87 E9PF16 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial 0 ;; 142.07 3.783e-05 457360000.0 365344.0 438514.0 443314.0 391170.0 461880.0 734885.0 435613.0 307757.0 496033.0 449310.0 False True 363377.028497534 453109.67340268963 505728.75784563535 440692.0818924365 520697.68022275664 684084.1296832147 414540.7349867392 330723.390098381 373792.31365166523 420634.6511263563 0.8638780174778744 1.0772048194065165 1.2022993267231266 1.0476837338825304 1.237885844231939 1.626314255973457 0.9855125674423182 0.7862485632431493 0.8886388999354695 1.0 18.682208176025796 2.0095076381190955 24.969538780382294 0.8723793069611738 1.180945769120705 0.32189998789755214 0.18843409196410044 220.35829243916004 578715.818281708 0.07362705219628829 0.054310855837934685 102.21335371329545 -2.0095076381190955 0.3085664621595312 EAMECSDVIWQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAMECSDVIWQR 12 0 Q9NS86 Q9NS86 LANCL2 LanC-like protein 2 0 147.74 0.00015318 95476000.0 78407.0 85466.0 67178.0 72544.0 78580.0 79457.0 74369.0 75129.0 82114.0 80204.0 False True 77984.86542383664 88310.68414471198 76636.07847835658 81728.06296189602 88586.69721984983 73964.32461165918 70771.48735283119 80735.50747733192 61878.10497122739 75085.31205390094 1.0386167852356294 1.1761379386865576 1.020653392548231 1.088469378714528 1.1798139316016527 0.9850704830068889 0.9425476889811283 1.075250342162458 0.8241039862337844 1.0 16.196243099546724 2.631867076190792 7.947985585107597 0.9760244789376811 1.099636269436111 0.442619253055493 0.07550944064791897 0.29638800106830887 19.836945739768918 0.023634203262395955 0.022258621200168752 428.41737531607555 -2.631867076190792 0.12361179049842996 EAMEDGEIDGNKVTLDWAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAMEDGEIDGNKVTLDWAK 19 1 P19338;H7BY16 P19338 NCL Nucleolin 0 ; 217.26 3.3187e-19 909290000.0 1374060.0 1062130.0 944360.0 788380.0 825340.0 1266380.0 1126600.0 1211190.0 1680880.0 1238470.0 False True 1366662.2136324162 1097482.354978856 1077317.679475732 888188.8271655784 930442.1568265554 1178838.1313378687 1072102.053970062 1301575.1480981992 1266649.64663805 1159429.784292489 1.178736506640965 0.946570779746326 0.9291788895462403 0.7660565902294565 0.8024997886304368 1.0167395622471638 0.9246804493851117 1.1225993723220165 1.0924763739884333 1.0 20.144984021545827 1.7582793628884672 11.365767910593641 1.0797776787901454 0.9289993937785678 0.23327891021862268 0.11014398528581183 0.26044236952748845 137.22997246593604 0.05386599591829941 0.029566812887352006 57.31646044716691 -1.7582793628884672 -0.15077828501157764 EAMEDGEIDGNKVTLDWAKPK ddPTM_BT-474_Trastuzumab_2h_R1 6 EAMEDGEIDGNKVTLDWAKPK 21 2 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;;; 187.83 1.5402000000000002e-17 8782720000.0 4921410.0 3949730.0 3424410.0 3086790.0 3148870.0 4849240.0 4900700.0 4921180.0 8070750.0 4799250.0 False True 4894913.675380049 4081194.3753877953 3906537.1624946953 3477577.297504294 3549859.9296852658 4514023.452683113 4663634.418507974 5288423.440845699 6081821.805009311 4492957.756155358 1.0894635429576456 0.908353605104912 0.8694800562375051 0.7740062306929125 0.7900942146233076 1.004688603292318 1.0379875956142228 1.1770472209761047 1.3536343173218595 1.0 22.099234066691494 2.1056876318430424 1.8090360870316144 1.1943718089412774 0.8844414926302073 0.5276736211242148 0.11631510270752408 0.2622443850142782 1.6487494288061113 0.06628163148408461 0.036782737425632935 127.55210548470502 -2.1056876318430424 -0.30993031631107004 EAMEHPYFYTVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAMEHPYFYTVVK 13 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2;A0A087WY74 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 171.57 2.4861e-05 337450000.0 338410.0 375080.0 350390.0 328570.0 271620.0 352230.0 306180.0 316820.0 476960.0 393190.0 False True 336588.038160886 387564.31105935207 399721.86635552323 370166.9283109592 306209.1969821278 327881.1691602338 291368.9036788151 340462.7171793625 359419.5989365594 368096.2775731054 0.9144021786366427 1.052888428034647 1.085916622115628 1.0056252965976884 0.8318725714940527 0.8907483969193773 0.7915562352323654 0.9249284437866808 0.9764282358578789 1.0 18.4897236347701 3.345941648383097 6.723802574395408 0.8928913379751211 1.0248785682142856 0.36952494095080846 0.07090925509689006 0.20308355186979182 11.40662174199902 0.019595646056502197 0.026568561301307234 2217.898403919179 -3.345941648383097 0.13198723023916448 EAMFDDDADQFPDDLSLDHSDLVAELLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAMFDDDADQFPDDLSLDHSDLVAELLK 28 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;H7C5M8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 0 ;; 167.23 5.7078e-12 118582000.0 73371.0 65677.0 66038.0 56690.0 63345.0 72241.0 77077.0 62289.0 88339.0 77145.0 False True 72975.97868828436 67863.01924241515 75335.57638741421 63866.948187443384 71411.61027476953 67247.14970702236 73348.49104726649 66937.32147713314 66569.03713195393 72221.5400528427 1.010446172082313 0.9396506802923542 1.0431178334371305 0.8843199430628803 0.9887854817623584 0.9311231754102626 1.0156040842330312 0.9268332055527585 0.9217338356845759 1.0 16.1401415642075 3.754618358448844 24.99362663240409 0.9525229554851193 0.9919294615283741 0.17286649525804554 0.04467885021117322 1561.6991264232204 2430753.033656093 0.010668478922391936 0.01916926056460202 5683.532639975667 -3.754618358448844 0.039406506043254796 EAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPK 40 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 102.04 8.0579e-06 82258000.0 9781.9 11442.0 9131.8 9427.6 8944.6 13248.0 16085.0 8068.6 16086.0 14143.0 False True 9729.235337271262 11822.840053164946 10417.478064971503 10621.133193366393 10083.641791202197 12332.196942437546 15306.907099332899 8670.71990352062 12121.820841356704 13240.381631568516 0.7348153254188862 0.8929380120718136 0.786795906254962 0.802177270181008 0.7615824129389269 0.9314079673530239 1.1560774851713675 0.6548693341925558 0.91551899172265 1.0 13.692657085534197 2.733261588411047 24.660271562214202 0.9080506082114244 0.8009354420741209 0.22476302140425375 0.12217225532211946 742.1407901661073 3453714.146771349 0.040414462395796776 0.039165455224762794 541.0801333803005 -2.733261588411047 -0.10711516613730343 EANELQQWINEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EANELQQWINEK 12 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 173.72 7.515600000000001e-05 108416000.0 168242.0 170879.0 149127.0 146192.0 154526.0 175948.0 194351.0 162105.0 230941.0 191185.0 False True 167336.20376544332 176566.60421646334 170122.78536487956 164699.8922105967 174203.9701526408 163785.1288970413 184949.49963708105 174202.09825251112 174028.68500085556 178983.40961828642 0.9349257795586596 0.9864970423405313 0.9504947175143009 0.920196416873766 0.973296745906011 0.9150855336052759 1.03333320128116 0.9732862873940535 0.9723174084793799 1.0 17.449466341419757 2.2448944430795725 24.99999516477833 0.9919066437481333 0.9487260789152157 0.4501737243235857 0.025848970466597863 149.57463211400986 590381.5972044707 0.008816580863488029 0.0072111300883666955 175.74963958798506 -2.2448944430795725 -0.043180564832917656 EANFTVSSMHGDMPQK ddPTM_BT-474_Trastuzumab_2h_R1 3 EANFTVSSMHGDMPQK 16 0 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ;; 199.65 3.759e-11 626770000.0 542520.0 758770.0 797130.0 798430.0 809980.0 874180.0 931700.0 838950.0 953750.0 942250.0 False True 539599.1325996387 784025.2007638486 909358.9752218343 899511.1561351276 913126.1518724083 813749.9941983738 886630.1115603651 901556.7091017801 718711.0920952363 882114.7982991902 0.6117107814538905 0.8888017775866943 1.030885069579576 1.0197211948710978 1.0351556890701883 0.9224989715254398 1.0051187365520688 1.0220401140986137 0.8147591373378914 1.0 19.750606894572968 4.693174693550953 2.7777155315670985 0.9859928717234405 0.5617653087736062 0.7480378681981432 0.06435737586958729 0.17251423443663252 1.942135250395841 0.015360143058338667 0.15827225411347334 49337.22214265015 -4.693174693550953 -0.4242275629498343 EANHNVSAPYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EANHNVSAPYGR 12 0 Q7L576;Q7L576-2;Q7L576-3;Q96F07;Q96F07-2;E7EVJ5;H7C229;E7EW33;A0A0G2JR96;A0A0G2JQT1 Q7L576;A0A0G2JR96 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 0 132.14 0.0001862 211260000.0 110020.0 134460.0 121740.0 123040.0 101580.0 113050.0 123740.0 111340.0 134650.0 119040.0 False True 109427.66454437115 138935.4198172137 138879.9338169509 138616.85138442472 114515.6108881692 105235.11959107526 117754.2234672959 119648.75617306416 101467.31171756063 111442.76528472849 0.9819180658770544 1.24669752641406 1.246199638550985 1.243838943068833 1.027573307209219 0.9442974545921117 1.0566340772901863 1.0736341284009772 0.910488100849963 1.0 16.765943436241916 3.1838070537233976 7.525581249435592 1.0106753651384848 1.1890046506191119 0.5053942618320266 0.08564057174952966 0.1901199788627467 22.079013266789634 0.024916465040064114 0.02998746701529075 1526.8875492246282 -3.1838070537233976 0.1783292854806271 EANNFLWPFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EANNFLWPFK 10 0 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ; 165.98 1.3234e-05 981220000.0 1456240.0 1440240.0 1331840.0 1247940.0 1208910.0 1389720.0 1534620.0 1367370.0 1881550.0 1478570.0 False True 1448399.7656434737 1488177.517756536 1519351.4954391955 1405929.0760458307 1362857.5227290494 1293651.9274489975 1460384.567782299 1469410.0927641718 1417867.2139782861 1384206.3967325357 1.0463755759708007 1.0751124407959878 1.0976336325461826 1.0156932371968315 0.9845768130721828 0.9345802262601192 1.0550338238788552 1.0615541845730248 1.0243177732202422 1.0 20.40062764621613 3.720831320001977 22.72396931703641 1.0147254249897235 1.073247731145998 0.38565369201565847 0.035749045286933664 298.2255011978312 382241.62491548946 0.010919392247126162 0.016973740366577943 5258.130009296252 -3.720831320001977 0.05852230615627452 EANYIAEELDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EANYIAEELDKR 12 1 Q9NQT8;E7ERX9 Q9NQT8 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein 0 120.9 0.00061876 280650000.0 118300.0 105000.0 95719.0 113280.0 94112.0 102950.0 116250.0 100170.0 160130.0 114740.0 False True 117663.0859443657 108494.86152615969 109195.40319553722 127621.23638513981 106096.60535447321 95833.30881823256 110626.54338187443 107645.19405295348 120668.10713206825 107417.19496614377 1.0953840861460893 1.010032533062845 1.0165542232782556 1.1880894527674462 0.9877059756393118 0.8921598525118603 1.029877417826282 1.0021225566994332 1.1233593203592867 1.0 16.712865427785854 EAPAPPKAEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAPAPPKAEAK 11 1 P62750 P62750 RPL23A 60S ribosomal protein L23a 0 106.49 0.0021197 117860000.0 193760.0 185670.0 164360.0 182350.0 173660.0 218690.0 222390.0 217600.0 375810.0 234720.0 False True 192716.81768876 191849.91371011495 187500.4593572697 205435.4913032332 195774.57163653738 203572.4750408869 211632.14608769942 233838.4169504108 283196.6610960002 219739.96864609796 0.8770221406517988 0.8730770050263305 0.8532833626605655 0.9349027059983666 0.8909374696045487 0.9264244292705366 0.9631026498804295 1.0641596901609607 1.2887808387380923 1.0 17.745437780807276 1.7418224728186036 2.1345571123157723 1.1490882076949138 0.8933875403426323 0.675793667304218 0.07029109658441694 0.15140653017790728 1.409703778521713 0.04432754515631032 0.01879722747982948 55.18518119082463 -1.7418224728186036 -0.2557006673522815 EAPCVLIYIPDGHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAPCVLIYIPDGHTK 15 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 147.35 3.7241e-06 698810000.0 998240.0 1047180.0 991500.0 960990.0 915490.0 984580.0 1018650.0 1008190.0 1273340.0 1234310.0 False True 992865.58675489 1082034.753266323 1131094.5817275075 1082651.2354674742 1032072.2249656447 916518.3020520206 969374.0078791073 1083426.257285086 959542.4188818313 1155535.2790540429 0.8592256807318602 0.9363926596443772 0.9788490254087757 0.9369261632182846 0.8931550976189416 0.793154755778907 0.8388960730585976 0.937596866944653 0.8303878179014513 1.0 20.140129875983334 4.791425778810591 19.98551792755387 0.9011910605689204 0.8592230060218546 0.04178165123292388 0.06345524795538987 13067.62357962789 4938378.364861802 0.015556169309935438 8.465748549494107 61862.25955432375 -4.791425778810591 -0.04196805454706576 EAPEEDPRLPDNFRPPGEDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAPEEDPRLPDNFRPPGEDFR 21 2 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 ;; 123.43 1.4863e-05 598420000.0 581967.0 699310.0 617990.0 676660.0 622108.0 660560.0 667150.0 630194.0 762850.0 678710.0 False True 578833.7543346127 722586.1106081773 704997.6203346271 762325.0866204879 701329.7662769952 614897.041990983 634877.4057395057 677222.2763402908 574855.8391662914 635394.1467271348 0.910983768604322 1.1372250032993874 1.109543775255114 1.1997672476952523 1.1037712101842447 0.9677411181048318 0.9991867394588212 1.0658302092151923 0.9047232212121067 1.0 19.277292274392796 2.748956501153295 24.020185085610578 0.9986555280448571 1.1016894018158905 0.29972866844654555 0.07849217498828122 541.7626106628956 1251767.2702431378 0.024096338424808843 0.02529045787938625 560.9917843957716 -2.748956501153295 0.10303387377103335 EAPGS(ph)PPLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 EAPGSPPLSPR 11 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 2 EAPGS(1)PPLS(1)PR;EAPGS(1)PPLS(1)PR;EAPGS(1)PPLS(1)PR 111.83 0.0011844000000000002 717580000.0 1263750.0 1423610.0 1254280.0 1362150.0 1236730.0 1391690.0 1268880.0 1197540.0 1417690.0 1303870.0 True False 1256946.1104158256 1470993.998259584 1430871.7216028022 1534598.0503356128 1394220.2348269904 1295485.745985878 1207499.4268076795 1286906.5157849048 1068319.2955727342 1220655.9003007298 1.0297300902786404 1.205084903859621 1.1722154632196362 1.2571913591353123 1.1421894036505291 1.061302981181439 0.9892217999439408 1.0542746038976694 0.8752010253745836 1.0 20.219225135010323 2.5743196581956433 2.1538720848889135 0.9900907887854351 1.1718612948613794 0.6109735044761557 0.06818758989029725 0.2183362290740409 2.015390558679826 0.02596981389765373 0.02300818471754086 375.2490990443104 -2.5743196581956433 0.18177050607594425 EAPGS(ph)PPLSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAPGSPPLSPR 11 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 EAPGS(0.803)PPLS(0.197)PR;EAPGS(0.958)PPLS(0.042)PR;EAPGS(0.899)PPLS(0.101)PR;EAPGS(0.774)PPLS(0.226)PR 171.2 1.5541e-05 1707270000.0 2109920.0 2397220.0 2131630.0 2133990.0 2177830.0 2449780.0 2393560.0 2220360.0 2540360.0 2440340.0 True False 2098560.425154151 2477010.018549911 2431744.9755398924 2404152.9151970777 2455163.741490272 2280432.4747618246 2277774.3585128556 2386054.5379596236 1914322.3170800027 2284595.4119198117 0.9185698326298702 1.0842226179857413 1.0644094629851448 1.0523320245910843 1.0746601908944247 0.9981778230244764 0.9970143276260788 1.044410106713185 0.8379261846942703 1.0 21.12350726463007 1.2631144471758624 24.99676676425307 0.918963031800629 1.03241652224134 0.35922275551641347 0.058781860420723406 188.2276908867804 191623.817889435 0.036675866985418575 0.013380381706293638 18.327973454868655 -1.2631144471758624 0.11345349044071096 EAPIDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAPIDKK 7 1 J3QRS3;P19105;O14950;P24844-2;P24844 J3QRS3;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 71.501 0.08681699999999999 1295100000.0 1249900.0 916040.0 857800.0 743130.0 679330.0 838650.0 1059400.0 1023500.0 1552200.0 1099400.0 False True 1243170.677276945 946529.8376421266 978570.78386874 837210.1818051636 765838.6487956297 780676.0994697503 1008152.7746989918 1099878.7672276916 1169681.1084143904 1029235.350756306 1.2078585100710293 0.9196437306069934 0.9507745562272647 0.8134292911625725 0.7440850610434958 0.7585010550755874 0.9795162728895561 1.068636795675037 1.136456406743979 1.0 19.97314148405901 1.933471396390429 3.9849534629423324 1.0709629158599294 0.8898797738680274 0.25992965804523216 0.12664639556836088 0.31503726569494317 9.295999630264399 0.0633915926601067 0.0368022513521263 85.79686051232227 -1.933471396390429 -0.181083141991902 EAPNPIHLTVDTSLQNGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAPNPIHLTVDTSLQNGR 18 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 0 202.97 1.2339e-15 747490000.0 287890.0 388560.0 365270.0 428030.0 373080.0 436140.0 433100.0 368180.0 453940.0 421730.0 False True 286340.03222758597 401492.98471051943 416696.84101624467 482218.5541130959 420589.52658159274 405990.66836312716 412149.2983973316 395655.4611801575 342072.56948436296 394814.83033878205 0.7252514602399402 1.0169146492445762 1.0554234770225985 1.2213790289977573 1.0652829991738 1.02830653046836 1.0439053113675472 1.0021291774694838 0.8664126653774326 1.0 18.59081665687137 1.4340369371169945 5.977480801326327 0.9318512784090239 1.0318816882907553 0.07635454813710929 0.1187339744348251 0.4513835022280667 31.617963253707106 0.07834233391357141 0.03039448618883995 27.16670314146532 -1.4340369371169945 0.1000304098817314 EAPPMEKPEVVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAPPMEKPEVVK 12 1 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841;K7EQJ5;S4R456;K7EJ78 K7EM56 RPS15 40S ribosomal protein S15 0 ;; 136.99 9.1371e-05 1213260000.0 1366530.0 1193240.0 1091590.0 1080900.0 1154850.0 1507860.0 1471190.0 1484800.0 2157780.0 1567410.0 False True 1359172.7543157553 1232956.2720711867 1245276.3837296315 1217741.829172827 1301913.3021677723 1403625.1873206454 1400022.9192084298 1595603.3156616278 1626024.0317706494 1467376.5518727875 0.9262603743947431 0.8402453143316115 0.8486413266862597 0.8298768490055562 0.8872387258104695 0.9565541888544032 0.9540992851641281 1.0873850434812977 1.1081164065865594 1.0 20.48480770605488 2.222755934011673 1.3254171441584126 1.073757309624811 0.8607046403514337 0.8001731253001114 0.041768931903555864 0.171986392846808 0.5855706614593629 0.02557559255347292 0.014570072318628087 167.01517541208952 -2.222755934011673 -0.2130526692733773 EAPS(ph)PLMIHSPQMS(ph)QFQSLT(ph)HQSPPQQNVQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 3 EAPS(0.996)PLMIHS(0.49)PQMS(0.501)QFQS(0.097)LT(0.51)HQS(0.406)PPQQNVQPK 77.654 0.0021681 238080000.0 45680.0 42570.0 40049.0 38892.0 39449.0 61233.0 61481.0 47062.0 80877.0 65535.0 True False 45434.06395552512 43986.91671589158 45687.55108785166 43815.72321231342 44472.596317458054 57000.10683697753 58506.929149772215 50574.00541599378 60945.94704627672 61352.50019266369 0.7405413603822124 0.7169539395747621 0.7446730116031165 0.7141636131326357 0.7248701548885848 0.9290592340651408 0.9536193140629053 0.8243185731172735 0.9933734868976768 1.0 15.904834516299259 2.7393477750840614 24.95584661945038 0.9217965179952624 0.7277442603187517 0.830431108880154 0.04750358853062549 29.49509329490441 935115.8924880428 0.014941543093376102 0.01502199868114957 548.7161909328134 -2.7393477750840614 -0.1940522576765107 EAPS(ph)PLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 EAPS(1)PLMIHSPQMSQFQS(0.006)LT(0.017)HQS(0.976)PPQQNVQPK 222.12 2.6822e-36 65113000.0 27637.0 29608.0 21401.0 33623.0 26570.0 36975.0 34687.0 29226.0 46661.0 38153.0 True False 27488.20546275936 30593.484381586037 24414.074779173363 37879.66835255615 29953.532007271664 34419.0052797878 33009.05729279205 31406.992526620936 35162.021775366506 35718.04287557333 0.7695887918192139 0.856527455554071 0.6835221869300553 1.060519146710054 0.8386106739279416 0.9636307733794142 0.9241563824698277 0.8793032875857648 0.9844330468457141 1.0 15.124365411546679 7.322326485123017 0.24596859303017746 0.9755054899607436 1.317545090493869e-13 0.36828194693215255 0.08609144495054483 40.260674389012735 0.7308468355523834 0.10906180026473254 15.116450643494632 21005183.75452086 -7.322326485123017 -0.9755054899606118 EAPSPLMIHS(ph)PQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 EAPSPLMIHS(1)PQMS(0.002)QFQS(0.046)LT(0.287)HQS(0.665)PPQQNVQPK;EAPSPLMIHS(0.977)PQMS(0.033)QFQS(0.012)LT(0.232)HQS(0.745)PPQQNVQPK;EAPSPLMIHS(1)PQMS(0.246)QFQS(0.106)LT(0.315)HQS(0.333)PPQQNVQPK;EAPS(0.004)PLMIHS(0.653)PQMS(0.093)QFQS(0.24)LT(0.115)HQS(0.896)PPQQNVQPK 223.0 2.4619999999999994e-36 1458450000.0 526772.0 535195.0 590886.0 574506.0 523942.0 686900.0 680463.0 558532.0 761115.0 717130.0 True False 523935.91808187054 553008.6420427909 674077.6127268176 647238.4006945734 590662.9080524633 639416.2197886739 647546.4050689058 600212.4940080288 573548.4066684827 671362.1494341181 0.7804072936245943 0.8237113791847132 1.0040447071598964 0.9640674578394415 0.8797977493225154 0.9524162485591853 0.9645262331436375 0.8940219440639298 0.854305544558803 1.0 19.356731676406746 4.390429169541593 6.208427599987465 0.9336485753510457 0.7908717794099545 0.5756548341767156 0.047477305112781816 0.13188135575961182 7.390655491096145 0.011665974030136793 0.03293765150280329 24571.358564884995 -4.390429169541593 -0.14277679594109127 EAPSPLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 EAPSPLMIHSPQMSQFQSLT(0.002)HQS(0.998)PPQQNVQPK;EAPSPLMIHSPQMSQFQS(0.041)LT(0.032)HQS(0.927)PPQQNVQPK;EAPSPLMIHSPQMS(0.008)QFQS(0.028)LT(0.037)HQS(0.927)PPQQNVQPK;EAPSPLMIHSPQMSQFQSLTHQS(1)PPQQNVQPK 227.46 4.7729999999999985e-36 3446111000.0 407741.0 399960.0 462515.0 439261.0 427969.0 527106.0 584074.0 473025.0 574783.0 529450.0 True False 405545.7677602843 413272.42681907414 527633.0917475516 494871.3975615546 482468.3153790003 490668.40289405856 555820.1092406437 508324.52747228 433135.43134760245 495660.0477150505 0.8181933759434815 0.8337820018462733 1.064505993936558 0.99840888900138 0.9733855242179333 0.9899292976224269 1.1213736346169634 1.025550737477454 0.8738558480642508 1.0 18.91899145064211 4.25046632977061 24.754946900396778 1.0116230222629243 0.8259875152436915 0.5860843069453835 0.0603154382989895 129.35713447774899 268959.8625333224 0.014856759280632093 0.03998861522541108 17801.898879302546 -4.25046632977061 -0.18563550701923281 EAQLFHPGDLQDLSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAQLFHPGDLQDLSNR 16 0 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 0 135.08 2.4819e-05 176970000.0 61379.0 75671.0 58623.0 57867.0 67550.0 74386.0 68517.0 60006.0 64079.0 62537.0 False True 61048.542283847964 78189.66349091448 66876.60883974962 65192.956266762805 76152.09209978174 69243.87090580924 65202.57094964198 64483.952424293995 48287.589064608765 58545.83511938061 1.042747825859245 1.3355290488465696 1.1422948994301945 1.1135370455272877 1.3007260370357734 1.1827292370945652 1.1137012704095457 1.1014268101702707 0.8247826504847989 1.0 15.837278922328295 1.468274238834594 2.7571543471303537 0.9151149227529488 1.1836128446756677 0.5441359438508829 0.09338785851507587 0.17481384622949364 2.5624303634779704 0.06854604680425538 0.023257842730802277 29.395052408788963 -1.468274238834594 0.26849792192271893 EAQLYAAQAHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EAQLYAAQAHLK 12 0 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33;E9PRH9;E9PI86 P49321 NASP Nuclear autoantigenic sperm protein 0 ;; 191.53 5.2488e-06 2314100000.0 2199070.0 2298540.0 2323220.0 1995920.0 1660350.0 2383550.0 2578220.0 2023020.0 3437120.0 2501020.0 False True 2187230.451459648 2375045.5144032296 2650309.1822097623 2248603.2673537093 1871785.730834532 2218780.7987731756 2453501.6488431506 2173988.0250874083 2590087.831048366 2341402.762369052 0.9341538698991664 1.0143686308801214 1.1319322009888448 0.960365855671304 0.7994291972819929 0.9476288464476712 1.04787680627859 0.928498103798147 1.106211999351915 1.0 21.158941693989 -0.20932115762857267 7.027692492753612 0.9999999993385883 0.9821717147221783 0.0009605880682803658 0.09133350905301538 0.0 0.0 0.08951677114743105 0.0210993053027576 0.6175595504193262 0.20932115762857267 -0.01782828461640995 EAQSFISAAIEPESGKS(ph)NER ddPTM_BT-474_Trastuzumab_2h_R1 1 EAQSFISAAIEPESGKSNER 20 1 Q8WXA9-2;Q8WXA9 Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 1 EAQSFISAAIEPES(0.204)GKS(0.796)NER 57.682 0.033805 0.0 78669.0 103670.0 80106.0 90060.0 100880.0 97994.0 83897.0 78273.0 119490.0 97044.0 True False 78245.45484494764 107120.59328016164 91384.2285061661 101461.58676594004 113726.47003739438 91219.90543306342 79838.58159233644 84114.12872224036 90043.29058396816 90850.56883645173 0.861254429631633 1.1790855539165535 1.005874037736352 1.1167963840555601 1.2517970057196188 1.0040653195829359 0.878790112322368 0.9258514261331898 0.9911142190651903 1.0 16.471207927084887 2.4820177584829377 24.789276314914385 0.9390091238641357 1.090102027719806 0.2748684962300332 0.10221339551752846 220.7526072801182 1117603.7807493282 0.033737643022897806 0.028962688262849985 303.4015243809629 -2.4820177584829377 0.1510929038556702 EAQTSFLHLGYLPNQLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAQTSFLHLGYLPNQLFR 18 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ; 215.81 9.3072e-19 2467600000.0 1322940.0 1978310.0 1802010.0 1827720.0 1856860.0 1869340.0 1841590.0 1639940.0 2018330.0 1989900.0 False True 1315817.4380324525 2044156.8524363497 2055717.344648297 2059109.1645996473 2093320.1145285077 1740116.9257530353 1752505.2561430216 1762320.6502465839 1520939.6157363853 1862902.8783608999 0.7063263755275273 1.097296523710849 1.103502157051283 1.105322874594183 1.1236871974616 0.9340889135799182 0.940738927670232 0.9460077982150016 0.8164352706753046 1.0 20.829121031279787 2.6155071586496654 8.43361665033065 0.9262866285245359 1.039582553767779 0.1403799706903669 0.12164771718059299 0.5570756105314393 35.95144925695928 0.03917813787971547 0.036900965456608065 412.57903776598437 -2.6155071586496654 0.11329592524324306 EARS(ph)PQPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EARSPQPNK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 EARS(1)PQPNK 80.834 0.013923 1572000000.0 927120.0 1153100.0 1085900.0 1512600.0 1264600.0 971400.0 1629000.0 1162500.0 1900600.0 1527400.0 True False 922128.4889327149 1191480.236436331 1238785.2811879967 1704095.0049096262 1425639.3141285572 904249.4044296384 1550199.0466156849 1249251.65305539 1432222.5967352074 1429920.0243270698 0.6448811634529525 0.8332495637279084 0.8663318647985069 1.191741479186282 0.9970063289375033 0.6323776078701915 1.0841159087517633 0.8736514153253407 1.0016102805534326 1.0 20.44750302840246 4.573093321657858 1.9165277733344825 0.953646315004058 0.6107724145105381 0.3274584856314918 0.1396979790453093 0.6761882007374392 3.392865147522256 0.03618477498841859 0.36563744935054837 37419.09861888442 -4.573093321657858 -0.34287390049351996 EAS(ph)PAPLAQGEPGREDLPTR ddPTM_BT-474_Trastuzumab_2h_R1 3 EASPAPLAQGEPGREDLPTR 20 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR 225.13 3.2188e-25 3125670000.0 1041850.0 1167950.0 1099480.0 1135080.0 1042000.0 1168260.0 1149120.0 1100120.0 1254000.0 1189260.0 True False 1036240.7953604162 1206824.509709317 1254277.2271485222 1278781.0116176256 1174692.523582127 1087500.9359882318 1093532.675535306 1182216.5406961672 944968.5027391085 1113360.40862329 0.9307325708139425 1.0839477498590044 1.1265689146423672 1.148577766654092 1.055087386334023 0.9767734936191648 0.9821910920000275 1.0618453211912038 0.8487534633170546 1.0 20.086489255953474 2.8373023461795603 4.473635965759525 0.9854562139367881 1.0795098973039137 0.2873344987590446 0.07356219139845038 0.32024585001186384 10.860802243768148 0.023246916389604286 0.024698315324710205 687.5469283505134 -2.8373023461795603 0.0940536833671256 EAS(ph)PLPAESASAGATLRPLLLSGHGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EASPLPAESASAGATLRPLLLSGHGAR 27 1 P35548;D6RIS4 P35548 MSX2 Homeobox protein MSX-2 1 EAS(1)PLPAESASAGATLRPLLLSGHGAR;EAS(1)PLPAESASAGATLRPLLLSGHGAR;EAS(1)PLPAESASAGATLRPLLLSGHGAR;EAS(1)PLPAESASAGATLRPLLLSGHGAR 212.78 2.9967e-26 1720080000.0 886720.0 1152680.0 1110470.0 1157540.0 1180290.0 1366410.0 1314570.0 1171890.0 1488130.0 1320030.0 True False 881945.9980438538 1191046.2569902253 1266814.5236217298 1304084.4453147508 1330592.9353730788 1271953.2928831587 1250979.2269549307 1259342.3825368446 1121400.301420374 1235784.5552654592 0.7136729410365569 0.9637976554370971 1.0251095291845633 1.0552684444535885 1.0767191819186102 1.0292678343191706 1.012295566913124 1.0190630536455643 0.9074399713463693 1.0 20.23699581730549 4.743524242648684 2.719197321834856 1.0198294950724534 0.652230022995932 0.8204865293724921 0.04213704638234347 0.18044489850598117 1.7760598635396212 0.01062568488010082 0.1500639693362543 55401.84688082612 -4.743524242648684 -0.3675994720765213 EASEVKPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EASEVKPPR 9 1 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 ;;; 117.53 0.0010373 1049710000.0 1122260.0 1185320.0 1032640.0 1052920.0 971630.0 1347760.0 1294170.0 1145220.0 1567650.0 1330140.0 False True 1116217.8768548088 1224772.6596589303 1178026.7361322164 1186219.5640416811 1095361.3211977931 1254592.5234857807 1231566.0528904982 1230682.131709329 1181323.6629337824 1245249.3264098533 0.8963810324418711 0.9835561711886577 0.9460167623848915 0.9525960294727809 0.8796321330731425 1.0075030733827937 0.9890116194169685 0.9883017847176657 0.9486643661471608 1.0 20.248003199940836 2.7073088197968804 24.997998444208584 0.9863730241020711 0.9364841628099236 0.440630130660965 0.03077572688660569 689.8974004860175 551841.1330638119 0.009718590436400972 0.009163448960321762 509.6931768189933 -2.7073088197968804 -0.049888861292147424 EASIDILHSIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EASIDILHSIVK 12 0 O00231;O00231-2;J3QRY4 O00231 PSMD11 26S proteasome non-ATPase regulatory subunit 11 0 122.33 0.0003605 321580000.0 951960.0 978270.0 897380.0 863530.0 799880.0 975180.0 1005100.0 880390.0 1263100.0 1045500.0 False True 946834.7531326981 1010831.1255732962 1023723.303833213 972852.8094602749 901739.9767397994 907768.1019268003 956479.4731451353 946089.1723298361 951825.9296728629 978775.2949024179 0.9673668287950563 1.0327509601415452 1.0459227047974033 0.993949085685971 0.9212941738887077 0.9274530187414498 0.9772206941946717 0.9666050801008003 0.9724662388089373 1.0 19.90061816149819 3.47028918733808 24.60751091986901 0.9591732259786675 1.0175620221779218 0.4264373766695866 0.028670641709114795 120.3868705057345 433603.1864340448 0.008023602887958342 0.010890668112955772 2953.175027722566 -3.47028918733808 0.0583887961992543 EASRPPEEPSAPS(ph)PTLPAQFK ddPTM_BT-474_Trastuzumab_2h_R1 4 EASRPPEEPSAPSPTLPAQFK 21 1 A0A0C4DFX9;Q9H3P2;H0Y3X6;Q9H3P2-7 A0A0C4DFX9 NELFA Negative elongation factor A 1 EASRPPEEPS(0.001)APS(0.813)PT(0.186)LPAQFK;EASRPPEEPS(0.001)APS(0.971)PT(0.028)LPAQFK;EASRPPEEPSAPS(0.975)PT(0.025)LPAQFK;EASRPPEEPS(0.001)APS(0.994)PT(0.005)LPAQFK 210.22 1.3061e-22 7716510000.0 4325560.0 4183690.0 3945070.0 3762480.0 3789430.0 4640240.0 4477170.0 4378310.0 5832000.0 5169800.0 True False 4302271.6655748915 4322941.592555992 4500501.56483685 4238809.582224236 4271991.448788692 4319471.130750033 4260592.182649686 4705041.724807698 4394781.744796244 4839858.937911538 0.8889250122300831 0.8931957827724205 0.9298827967037557 0.8758126293766192 0.8826685867485451 0.8924787243104941 0.880313297826855 0.9721443920508114 0.908039222046552 1.0 22.206533568778344 1.1008009332913657 0.7566322464635392 0.9957926822944407 0.8918315745322414 0.5989800331235824 0.025438410464852065 0.43148338881989184 0.5693428731107216 0.024326534102215306 0.009410701009252908 12.612492857176303 -1.1008009332913657 -0.10396110776219936 EATAQKPTGSVGSTVTT(ph)PPPLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 EATAQKPTGSVGS(0.022)T(0.082)VT(0.082)T(0.814)PPPLVR;EATAQKPTGSVGS(0.009)T(0.169)VT(0.36)T(0.463)PPPLVR 158.73 3.3831e-11 684990000.0 732010.0 718750.0 688990.0 655080.0 617010.0 857420.0 804610.0 733600.0 994710.0 911660.0 True False 728068.9394939573 742673.1592564494 785993.8031915631 738013.0608331348 695582.566195208 798148.5735495774 765687.9403913117 788344.9571453197 749577.0489311159 853477.0782886049 0.8530620892055867 0.870173526798939 0.9209313561972169 0.864713393724646 0.8149985323448786 0.9351728287185259 0.897139431004605 0.9236861506885594 0.8782626598879144 1.0 19.70299288195647 -4.999999988855603 0.15357762009100692 1.423366876961362 0.8517454030263564 0.5462403184024393 0.03307241476556952 102.42247568844205 0.9238275324978914 13.134959948002694 0.15711359868443012 1.0000000256609237e-05 4.999999988855603 -0.5716214739350057 EATDAIGHLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 EATDAIGHLDR 11 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;;; 196.16 6.1438e-08 26857000000.0 17788800.0 22370300.0 19454000.0 20630600.0 20772400.0 21694100.0 20393400.0 18566900.0 23475600.0 21196900.0 False True 17693027.077321466 23114881.91236807 22192954.102800723 23242431.84469693 23417642.012339108 20194437.929418348 19406893.331646603 19952456.35880785 17690352.936923627 19844095.69442091 0.891601580126213 1.1648241506347266 1.1183656057978084 1.17125175178587 1.1800810867346747 1.0176547342036824 0.9779681387599221 1.0054605997701072 0.8914668226427269 1.0 24.242206483697156 2.537818318151065 5.109447685174026 0.9756069389399059 1.1127118853062357 0.3780794782738718 0.08262139244128724 0.22290227432128315 11.904054542295023 0.027111713632081997 0.025025169816834246 344.9993828198757 -2.537818318151065 0.13710494636632975 EATDEELER ddPTM_BT-474_Trastuzumab_2h_R1 1 EATDEELER 9 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 88.294 0.029968 598970000.0 181990.0 179860.0 152940.0 181710.0 170630.0 194290.0 196120.0 155680.0 272760.0 226450.0 False True 181010.18606098983 185846.53137233417 174472.6226216891 204714.46736885377 192358.7190967546 180859.1896094649 186632.9263488446 167297.63212702182 205541.952796746 211997.7671264009 0.8538306252681656 0.8766438151281358 0.8229927370775659 0.9656444506172344 0.9073620052897219 0.8531183703535423 0.8803532644641826 0.7891480858252284 0.9695477248786035 1.0 17.693689544071358 1.0732479071030305 7.335810195814713 0.9996733030915772 0.868235784932251 0.5240627226930872 0.04471884624477573 0.1587300621741626 12.40949181093387 0.04482291117263988 0.011236409198759538 11.837170608037614 -1.0732479071030305 -0.13143751815932625 EATGLS(ph)PQAAQEKDGIVIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EATGLSPQAAQEKDGIVIVK 20 1 P17029;C9JRM9 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 EATGLS(1)PQAAQEKDGIVIVK;EATGLS(1)PQAAQEKDGIVIVK 233.45 1.041e-29 1143210000.0 408070.0 702650.0 680650.0 606240.0 612320.0 988320.0 977030.0 776050.0 1387940.0 904700.0 True False 405872.9964608387 726037.2804891048 776479.6036841428 682989.9218408124 690295.3224950167 919999.764655034 929767.3262829487 833962.791702052 1045900.7844431568 846961.2714473617 0.4792108094473403 0.8572260680212551 0.9167828918047533 0.8064004162476749 0.8150258409282157 1.0862359303429043 1.0977684076322414 0.9846528050531794 1.2348861981089523 1.0 19.6919364761451 5.257070282581938 0.38617483345325126 1.0928561636914083 2.3596808390430703e-19 0.6796364534378594 0.11185305722491651 5.44572372065521 0.4752252336111413 0.09213239656330194 2.985660154319952 180746.66076029898 -5.257070282581938 -1.0928561636914083 EATNPPVIQEEKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EATNPPVIQEEKPK 14 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;; 235.22 2.8507e-17 1930740000.0 1319970.0 1149960.0 1009270.0 842710.0 892160.0 1347180.0 1300920.0 1348850.0 2081650.0 1251550.0 False True 1312863.4281824552 1188235.7234345016 1151366.4432678975 949396.999594996 1005771.2877533879 1254052.6175206096 1237989.5296029947 1449508.0363215166 1568655.250180916 1171675.0074941367 1.1205013504472359 1.0141342230861297 0.9826670671505803 0.8102903906992716 0.8584046611222277 1.070307559263088 1.056598051238359 1.237124652356955 1.338814295899169 1.0 20.160141028080854 2.0854117860939674 1.9948441751592125 1.2122769265630748 0.9590301467138453 0.40609649149843174 0.11593957310745079 0.3008170442159046 2.297203151828227 0.06450788005437032 0.03624328671815334 121.73397016605446 -2.0854117860939674 -0.2532467798492295 EATNTTSEPSAPSQDLLDLS(ph)PSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EATNTTSEPSAPSQDLLDLSPSPR 24 0 J3KQU4;I3L4I4;O75674;O75674-2;O75674-3;I3NI44 J3KQU4 TOM1L1 TOM1-like protein 1 1 EATNTTSEPSAPS(0.014)QDLLDLS(0.945)PS(0.041)PR 58.49800000000001 0.051660000000000005 119980000.0 57961.0 58819.0 54998.0 62264.0 51704.0 69304.0 55771.0 44667.0 61257.0 53560.0 True False 57648.94441607247 60776.75485816362 62741.24034881436 70146.61601592826 58288.197926382185 64513.17760406792 53073.14366409046 48000.27835443018 46161.03315174614 50141.754944977 1.149719320341569 1.2120986775364548 1.2512773120458864 1.3989661130310171 1.1624682460824252 1.2866158688474583 1.0584620287488982 0.9572915508662039 0.9206106408202285 1.0 15.613724870458196 2.066415680293545 3.1839447749663154 0.9601147367313788 1.2461577819449847 0.7808372829648251 0.06856440367160802 0.11223144437247237 2.266113700035879 0.031042912664601446 0.01997598145303428 116.52407935292638 -2.066415680293545 0.2860430452136059 EATNTTSEPSAPSQDLLDLSPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 EATNTTSEPSAPSQDLLDLSPSPR 24 0 J3KQU4;I3L4I4;O75674;O75674-2;O75674-3;I3NI44 J3KQU4 TOM1L1 TOM1-like protein 1 1 EATNTTSEPSAPSQDLLDLSPS(1)PR;EATNTTSEPSAPSQDLLDLS(0.009)PS(0.991)PR;EATNTTSEPSAPSQDLLDLS(0.001)PS(0.999)PR 187.92 1.1442999999999997e-17 2326340000.0 2329360.0 2731560.0 2509480.0 2528240.0 2558650.0 2869780.0 2674830.0 2715630.0 3151850.0 2680870.0 True False 2316818.9845762243 2822478.3233371135 2862792.971208822 2848314.9247737112 2884478.9111932875 2671398.863335479 2545438.2540571094 2918284.10028973 2375118.8001262043 2509774.5813917164 0.9231183556299727 1.1245943537176144 1.1406574090097568 1.1348887449462763 1.1492980017328052 1.0643979276633437 1.0142099106946956 1.162767414223905 0.9463474599416641 1.0 21.259126361821956 2.500517454897141 23.485489928295397 1.0539128525648682 1.101575359485389 0.09235804088475241 0.08074277906930737 1019.038805856913 1022927.2053318457 0.026204648318463808 0.02453426199510844 316.6047708720558 -2.500517454897141 0.047662506920520764 EATSDPS(ph)RTPEEEPLNLEGLVAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EATSDPSRTPEEEPLNLEGLVAHR 24 1 E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;A0A087WWW7 E9PGF5 TNS1 Tensin-1 1 EATSDPS(0.731)RT(0.269)PEEEPLNLEGLVAHR;EAT(0.004)S(0.02)DPS(0.859)RT(0.117)PEEEPLNLEGLVAHR 240.41 9.215999999999999e-38 313710000.0 132826.0 145913.0 137391.0 136873.0 151911.0 171847.0 172091.0 157404.0 183230.0 185875.0 True False 132110.8795743559 150769.6259987287 156734.45857602023 154201.10776609523 171255.96540295988 159967.62137432562 163766.3008785387 169150.28576131654 138075.4216562097 174012.29836440634 0.759204267836846 0.8664308638863892 0.9007090880886829 0.8861506296708772 0.9841601255350682 0.9192891702362946 0.9411191186934899 0.972059373683416 0.793480822643123 1.0 17.40882974696103 5.592652974797712 0.8155679550766765 0.9339557804528182 0.2284241990397051 0.4689014450831289 0.054912442418656185 7.030145888572974 1.2925629150551405 0.0174310119282663 6.217713755353939 391428.9788077076 -5.592652974797712 -0.7055315814131131 EATWVVDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EATWVVDVK 9 0 H0YF61;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 H0YF61 SCP2 Non-specific lipid-transfer protein 0 ; 145.17 0.00022753 177916000.0 246788.0 242940.0 192120.0 227703.0 208917.0 257781.0 274980.0 239730.0 289150.0 283920.0 False True 245459.32082872416 251026.11103966887 219168.82606302446 256530.17645308533 235521.34160192593 239961.20622120253 261678.1668743896 257619.869924274 217892.8569114942 265799.98252385866 0.9234738034894013 0.9444173346291937 0.8245629814642726 0.9651248808116785 0.88608486488815 0.9027886455924172 0.9844927918718013 0.9692245555401781 0.8197624952512393 1.0 18.01998148419483 2.2910570941778654 24.999774422464803 0.9454108098663639 0.907252104657482 0.08367971461398349 0.05758567864923549 241.4811776864704 114996.4177134464 0.019369052372890657 0.016205298826370788 195.45963983430505 -2.2910570941778654 -0.03815870520888198 EAVAHENNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EAVAHENNR 9 0 Q99747;J3KTJ6 Q99747 NAPG Gamma-soluble NSF attachment protein 0 ; 122.26 0.00059086 214530000.0 229804.0 284030.0 269060.0 249550.0 244240.0 225710.0 262390.0 226400.0 308090.0 272210.0 False True 228566.7607976245 293483.7668502394 306941.3092885555 281143.00441306224 275342.5162761022 210107.1989641891 249697.19327286037 243295.1176359057 232165.34769449141 254837.32474929382 0.8969124166661457 1.151651419739889 1.2044597846509377 1.1032253799150014 1.0804638470717787 0.8244757677113832 0.9798297542108863 0.9547075487284165 0.9110335305979732 1.0 17.959217071839014 2.883539548757633 7.4717133987137965 0.9372995807825303 1.1005223745222075 0.43908414121877803 0.08624274545357129 0.24327598464728145 14.189435068442739 0.026152798187279853 0.02779338915207873 764.7853299695876 -2.883539548757633 0.16322279373967719 EAVELPLTHFELYK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAVELPLTHFELYK 14 0 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;;; 232.53 1.3139e-13 1860230000.0 2715570.0 2769660.0 2528260.0 2410570.0 2561920.0 2995600.0 2924170.0 2848330.0 3628740.0 3118300.0 False True 2700949.6728481925 2861846.4588051713 2884217.031970132 2715747.9148386903 2888165.32631048 2788521.2228839034 2782716.7256858093 3060886.848126673 2734485.6496248157 2919287.4242890542 0.9252085458854623 0.9803236348000671 0.9879866600228777 0.9302776740115157 0.9893391456697165 0.9552061231391092 0.9532177964160193 1.0485047901277151 0.9366962728210142 1.0 21.47718483058656 EAVILPIKFPHLFTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EAVILPIKFPHLFTGK 16 1 O75351;I3L4J1;Q9UN37 O75351;I3L4J1 VPS4B;VPS4A Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A 0 ; 211.12 4.756999999999999e-12 659420000.0 1212290.0 1345760.0 1242200.0 1134150.0 1235320.0 1531740.0 1545560.0 1380190.0 1878630.0 1493410.0 False True 1205763.1653380797 1390552.808070901 1417090.9626040452 1277733.2737129796 1392630.6796847137 1425854.419128117 1470795.3581874394 1483186.7862628126 1415666.8088522926 1398099.2952273749 0.8624302790611054 0.994602323896282 1.013583918854334 0.9139073870323209 0.9960885356559944 1.0198520405492575 1.0519963519102138 1.0608594048547888 1.0125652832276557 1.0 20.415035396164118 2.870478273154553 2.5834885764551174 1.0382309270545405 0.9543339432019556 0.4367945706186106 0.04309587788997421 0.26611176284427346 3.4669400252194364 0.01416126451205932 0.015278226964466152 742.127069743592 -2.870478273154553 -0.08389698385258482 EAVLDVIPTDIHQR ddPTM_BT-474_Trastuzumab_2h_R1 8 EAVLDVIPTDIHQR 14 0 P09467;A0A3B3IUC7 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ;;;;;;; 156.5 5.552999999999998e-06 14554200000.0 8902560.0 10668270.0 10139560.0 9516160.0 8733000.0 9466210.0 10171320.0 9161040.0 12152580.0 10428440.0 False True 8854629.606127402 11023356.917844614 11567121.91336457 10720904.880286127 9845095.78545366 8811833.183761457 9679294.393384311 9844683.323618526 9157739.495229067 9762888.030963343 0.9069682636986753 1.1291081986071796 1.18480534414397 1.0981284273961147 1.008420434018048 0.9025846814809735 0.9914376117687808 1.0083781860854868 0.9380154177928677 1.0 23.218876554368435 3.1242846843776815 4.380212264069066 0.972401764448586 1.090502050806661 0.3388207392566751 0.07265347042780526 0.24029256082184575 8.061759832998163 0.021731174936980055 0.026420879826230856 1331.3268300654709 -3.1242846843776815 0.11810028635807501 EAVTEILGIEPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAVTEILGIEPDR 13 0 E9PGT1;Q15631;H7C1D4 E9PGT1 TSN Translin 0 83.045 0.020601 0.0 54118.0 42027.0 35450.0 36755.0 33638.0 42327.0 37882.0 38775.0 62851.0 47606.0 False True 53826.634701075025 43425.84328914201 40441.05186307629 41408.17923142495 37921.59991195349 39401.03411704063 36049.502936706805 41668.58739546042 47362.21321025178 44567.74432245287 1.2077486872935053 0.9743783076601528 0.9074062974890658 0.9291064616560332 0.8508754591120039 0.8840706370950596 0.8088698112223139 0.9349494354927027 1.0627016002331326 1.0 15.443712324184952 4.75504101575387 2.3841479882792735 0.9114882976207913 1.2852729679795811 0.6063583864066187 0.0682799425726416 0.38456811041993655 2.5542579853651146 0.01713479072618591 0.3017041631276666 56890.66571391703 -4.75504101575387 0.3737846703587898 EAVTEILGIEPDREK ddPTM_BT-474_Trastuzumab_2h_R1 6 EAVTEILGIEPDREK 15 1 E9PGT1;Q15631;H7C1D4 E9PGT1 TSN Translin 0 ;;;;; 246.5 3.201499999999999e-18 4045180000.0 1624935.0 1547335.0 1365195.0 1411611.0 1285372.0 1766413.0 1705010.0 1623895.0 2476003.0 1833279.0 False True 1616186.5305072493 1598837.1100912408 1557402.5895123389 1590320.8078642618 1449056.505203268 1644305.0269989371 1622532.1525292888 1745078.2908717268 1865825.2373903845 1716277.5646708827 0.941681324615563 0.9315725748578655 0.9074304888504383 0.9266104973930749 0.8443019561822114 0.9580647447979971 0.9453786415022148 1.0167809256461189 1.087134899271482 1.0 20.710851460618407 1.793293309674874 1.9142573629257271 1.046605607879827 0.9152544446728892 0.6999249982877918 0.03440396553066312 0.16708142144631094 1.1940337896856867 0.022855862956684122 0.009832696206220196 62.128849247974735 -1.793293309674874 -0.13135116320693774 EAVTHIGR ddPTM_BT-474_Trastuzumab_2h_R1 6 EAVTHIGR 8 0 D6RBW1;P06730;P06730-3;P06730-2 D6RBW1 EIF4E Eukaryotic translation initiation factor 4E 0 ;;;;; 157.68 0.00037306 4394290000.0 5060310.0 6418330.0 5698470.0 6056200.0 5891980.0 5888210.0 6086820.0 5304580.0 6530930.0 6030610.0 False True 5033065.8532132935 6631960.234087583 6500765.044010833 6822914.299043825 6642288.728498481 5481171.902055425 5792377.262689548 5700434.6957114525 4921469.81147842 5645731.306735025 0.8914816486588978 1.174685771208425 1.1514478268308312 1.2085085046297706 1.176515205492444 0.9708524200428578 1.0259746608520994 1.0096893362443886 0.8717152028838845 1.0 22.428729038589083 2.7301862125284404 24.451564162765646 0.9832155572398822 1.1301421658913327 0.38370233240779783 0.09115083637394115 491.88053413369164 1436187.892388962 0.029239443181999974 0.028003145560142752 537.2621089688147 -2.7301862125284404 0.14692660865145046 EAVVDLHADDSRIS(ph)EDETER ddPTM_BT-474_Trastuzumab_2h_R1 2 EAVVDLHADDSRISEDETER 20 1 Q9UKV3-5;G3V3T3 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 EAVVDLHADDS(0.001)RIS(0.999)EDETER;EAVVDLHADDS(0.018)RIS(0.979)EDET(0.003)ER 256.56 2.0752999999999996e-36 3932200000.0 933490.0 985040.0 967190.0 978600.0 999730.0 1021630.0 980780.0 958130.0 1013710.0 1056870.0 True False 928464.1935604879 1017826.460930746 1103361.9450338157 1102490.6596618826 1127039.6896360456 951007.1227583396 933335.9244565562 1029630.5258855573 763894.753518072 989419.6517680713 0.9383927152663106 1.0287105770659724 1.1151607339334042 1.1142801314808695 1.1390916762387429 0.9611767070311477 0.9433165419634685 1.0406408686603605 0.7720634537155278 1.0 19.916223028902806 2.6452111673784353 7.854061586696641 0.95315406432025 1.0701389620916557 0.34854647483223833 0.08400947140375324 0.37291262474829157 28.080365381231427 0.02762322017866436 0.02602005068480924 441.7852047372717 -2.6452111673784353 0.11698489777140575 EAWPHIK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAWPHIK 7 0 P52209-2;P52209;K7EM49;K7EPF6;K7EMN2 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 84.244 0.021688 2271610000.0 2339970.0 2499740.0 2306940.0 2288270.0 2181230.0 2702190.0 2628500.0 2365670.0 3180770.0 2730330.0 False True 2327371.861515105 2582942.3347752606 2631737.099718055 2577964.747378391 2458996.7113368902 2515393.9655710566 2501349.413154897 2542208.308028857 2396911.8536343514 2556078.0018468853 0.9105245848653564 1.0105099816629088 1.029599682723494 1.0085626281810225 0.9620194335071741 0.9840834136335305 0.9785888424952429 0.9945738378061989 0.9377303243103188 1.0 21.285500431884756 3.241186703037381 24.99914067816274 0.9776994930909878 0.9941214469160651 0.030407174424181616 0.03375096095293758 245.0666559919759 2332889.434579413 0.009449817613928836 0.012250607573319422 1742.5558365011664 -3.241186703037381 0.016421953825077273 EAYDNGLPLLPHTLCAAILDQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EAYDNGLPLLPHTLCAAILDQDR 23 0 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 0 161.8 1.7357e-11 46888000.0 32401.0 37181.0 31230.0 39658.0 30781.0 41218.0 35579.0 31452.0 41802.0 41832.0 False True 32226.556616089536 38418.54710861087 35626.912543973835 44678.69873377363 34700.77789671922 38368.69667673542 33857.90784502113 33799.107950019876 31500.457218102267 39162.245945822964 0.8228985809616676 0.9810098011681728 0.9097259792827023 1.140861502059461 0.886077319077263 0.9797368805102409 0.8645548034160285 0.8630533600339865 0.8043577802376296 1.0 15.257175885093364 2.232197677216239 24.79422929954481 0.8704148831034433 0.9581184012345589 0.12018134025082994 0.09024795868782456 233.3096151542705 909119.3744235949 0.031922076730622084 0.024159681995762978 170.68591209135334 -2.232197677216239 0.08770351813111565 EAYPDHTQFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAYPDHTQFEK 11 0 Q9P016-2;Q9P016 Q9P016-2 THYN1 Thymocyte nuclear protein 1 0 ;;; 162.68 2.4837e-05 1526370000.0 3144930.0 3026030.0 2691130.0 2716860.0 2569740.0 3436830.0 3249790.0 2973800.0 4328310.0 3389870.0 False True 3127998.0463145715 3126749.5792762386 3070017.7122787167 3060814.197434069 2896981.156957707 3199250.031527597 3092585.2422966184 3195720.0566504216 3261655.9968825458 3173525.5943862842 0.9856539527671535 0.9852605521150393 0.9673839460155403 0.9644838544388636 0.9128589232373728 1.0081059491648081 0.9744951317762041 1.0069936295151984 1.0277705031439346 1.0 21.597655047282906 1.9176879816024377 1.498430210711257 1.0144866498057534 0.9670616094181652 0.38606997516387687 0.023622646099482083 0.412875923400526 1.7278957795699954 0.016861543109844376 0.007556178956573684 82.73475431942803 -1.9176879816024377 -0.04742504038758821 EAYPEEAYIADLDAK ddPTM_BT-474_Trastuzumab_2h_R1 4 EAYPEEAYIADLDAK 15 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 ;;; 234.41 2.7533000000000003e-17 182693000.0 246273.0 207670.0 179617.0 180918.0 181615.0 230557.0 239671.0 220615.0 321839.0 269517.0 False True 244947.0935315023 214582.17041083402 204905.51234104868 203822.20025005977 204742.59373355826 214619.13726279995 228077.1980978684 237078.4115602708 242526.0908716523 252316.19431488717 0.9707941822624816 0.8504494568550697 0.8120981409751663 0.8078046706573755 0.8114524487399422 0.8505959668801845 0.9039340448089953 0.9396083838534762 0.9611990682174885 1.0 17.944873279672937 1.758845021259496 1.3775013430879235 0.9839308222614181 0.8445407696794499 0.5794108976524079 0.0451448778941254 0.29788452633513207 1.0737273628400614 0.037451976676243774 0.014748717964604802 57.39116243007503 -1.758845021259496 -0.13939005258196824 EAYPGDVFYLHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EAYPGDVFYLHSR 13 0 P25705;P25705-2;P25705-3 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial 0 ;;; 164.68 3.6615e-05 6504540000.0 3373940.0 4442420.0 4129800.0 3724020.0 4916220.0 7433300.0 3889360.0 3014890.0 4978830.0 4618220.0 False True 3355775.081919974 4590283.264200401 4711239.943134901 4195480.550167626 5542271.47628111 6919453.4671060555 3701216.7980019525 3239876.4011012176 3751864.0594039587 4323481.2457429385 0.7761743121296515 1.0617099978680757 1.0896866842602277 0.9703940671186334 1.2819002006168614 1.6004356382762637 0.8560732862311613 0.7493675158857972 0.8677877493046107 1.0 22.04376200056254 2.0440106597165424 24.99999681077763 0.8340801497885922 1.1333793901326144 0.26808434714087326 0.20910452825064177 164.28165779723457 93318.52467025911 0.08205872325627898 0.06060435146454225 110.66509462860043 -2.0440106597165424 0.2992992403440221 EAYSGCSGPVDSECPPPPS(ph)SPVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 EAYSGCSGPVDSECPPPPS(0.602)S(0.398)PVHK 167.27 7.6957e-12 1110300000.0 306010.0 332460.0 267970.0 282980.0 256980.0 342670.0 264800.0 236590.0 324940.0 324220.0 True False 304362.47616090707 343525.730123686 305697.84676300583 318805.23898540693 289704.8797602059 318982.02945841436 251990.61236576608 254245.54717967747 244862.8909729237 303528.0020212929 1.0027492492753787 1.1317760728368884 1.007148746498719 1.0503322160142652 0.9544584942112943 1.0509146679522416 0.8302054857794918 0.8376345690894172 0.8067225736745903 1.0 18.211470093104648 2.239457934413694 24.999929919249528 0.8523483410922278 1.0334479186004992 0.5985194728556452 0.06536169852093793 14.146304113315846 394141.13397719845 0.02227787757782189 0.017647277780789936 173.56331420116007 -2.239457934413694 0.18109957750827144 EAYSGCSGPVDSECPPPPSS(ph)PVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 EAYSGCSGPVDSECPPPPS(0.213)S(0.787)PVHK 125.52 6.3292e-05 885250000.0 382380.0 410720.0 344030.0 369960.0 296870.0 425820.0 332560.0 307850.0 403430.0 340370.0 True False 380321.30856641184 424390.56691451714 392466.4336376343 416796.8980671462 334674.63481365255 396384.06567246094 316472.80229742936 330823.33023062535 304010.0821850388 318647.2951945819 1.1935494645707527 1.331850523492952 1.2316640986956275 1.308019570078664 1.0502980563801225 1.243958670449122 0.9931758626859685 1.0382116378192012 0.9540645308142192 1.0 18.281600889067537 2.4916608671188256 0.813495505420382 0.9741357658499723 1.2707598796778086 0.6795489941345805 0.07614750496712716 0.33471801766858983 0.44846826869521444 0.05112392272758401 0.037886567487616145 310.2136238743215 -2.4916608671188256 0.29662411382783627 EAYVHK ddPTM_BT-474_Trastuzumab_2h_R1 5 EAYVHK 6 0 P61326;Q96A72;F5H6N1;F5H6P7;F5H3U9 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 0 ;;;; 76.805 0.074088 4393600000.0 5878350.0 6686060.0 6058890.0 5969220.0 5877070.0 6158920.0 6593530.0 5820140.0 8731850.0 6762920.0 False True 5846701.616746075 6908601.465291379 6911929.047184044 6724922.639962083 6625480.028376966 5733168.356938221 6274575.764169378 6254468.400872084 6580002.5682954425 6331304.655572885 0.9234592133549826 1.091181334831258 1.0917069108497388 1.0621701222421402 1.0464636261888212 0.9055271652252308 0.991039936555008 0.9878640724336069 1.0392806737713451 1.0 22.59407138749005 2.949175453466234 24.99196357771563 0.983967294412218 1.0498172753944586 0.22096496110488573 0.053962355617152416 483.7944837299005 237896.01992193077 0.016256989545298372 0.01724330872381344 889.5604246037037 -2.949175453466234 0.0658499809822406 EAYVPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EAYVPSK 7 0 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 87.616 0.044693 164280000.0 210130.0 229480.0 211230.0 199720.0 213150.0 238710.0 229850.0 208540.0 272040.0 240720.0 False True 208998.68342763776 237118.10307641057 240969.34795592664 225004.5315222473 240293.3890609695 222208.5395628974 218731.2773877317 224102.31374466306 204999.38714924024 225357.04350923919 0.9274113654187571 1.0521885599137673 1.0692780851380284 0.9984357622841399 1.0662785831724755 0.9860288194355341 0.9705988061507568 0.9944322584950637 0.9096648764867014 1.0 17.78185301646722 2.524127104166457 9.493288570754476 0.9719824050258974 1.0256958295230472 0.2482463354920338 0.044526061231074075 0.7073751144237252 139.43691352777887 0.013986785324356389 0.013116796247196876 334.29286258728206 -2.524127104166457 0.053713424497149775 ECADLWPR ddPTM_BT-474_Trastuzumab_2h_R1 6 ECADLWPR 8 0 J3KTJ3;P62829 J3KTJ3 RPL23 60S ribosomal protein L23 0 ;;;;; 98.523 0.019593 295340000.0 5573720.0 6706390.0 6547170.0 6362490.0 5544960.0 6459070.0 6844030.0 5736510.0 7516610.0 6663120.0 False True 5543711.710818502 6929608.137051642 7468954.626978195 7167980.581639203 6251077.788447167 6012569.693915324 6512958.122166453 6164597.505607552 5664242.182913728 6237873.977015971 0.8887181323708727 1.1108926154302619 1.197355806561379 1.1491063474591339 1.002116716605665 0.9638812383945553 1.0440990225458313 0.9882529734203651 0.9080404964550673 1.0 22.572622975744054 3.1254878802347474 6.716749672623788 0.9859285162984425 1.0957797858131944 0.27235606245406707 0.08152367249353398 0.2871949442699743 15.86404964318916 0.024329333119784382 0.02920829883029381 1335.0203329093713 -3.1254878802347474 0.10985126951475188 ECDS(ph)DDNMGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ECDSDDNMGAK 11 0 Q9Y4E5-2;Q9Y4E5 Q9Y4E5-2 ZNF451 Zinc finger protein 451 1 ECDS(1)DDNMGAK 175.6 1.0102e-05 417580000.0 672370.0 529620.0 501470.0 475160.0 440640.0 602790.0 641200.0 548550.0 970410.0 640240.0 True False 668750.0346273298 547248.0815379494 572072.6171446214 535315.2072807477 496752.89212209935 561120.5461150305 610182.7063781327 589485.5864804592 731265.458327798 599379.3350629583 1.1157375563458236 0.91302460649643 0.9544416760456571 0.8931158883289139 0.8287788101168367 0.9361693226478869 1.0180242639063284 0.9834933438580096 1.2200378217093295 1.0 19.193109819022162 1.4864986308730495 3.113920663469625 1.1094124919266681 0.942937189036469 0.31394698255727316 0.08881689720366835 0.2482312174524808 4.82470478323518 0.063760055270819 0.022808263532286776 30.654810153856836 -1.4864986308730495 -0.16647530289019918 ECEDVMDWINDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ECEDVMDWINDK 12 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3;A0A5F9ZHC3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 87.184 0.024872 38858000.0 125470.0 88632.0 81812.0 80088.0 79561.0 112351.0 91559.0 111141.0 139127.0 104257.0 False True 124794.48346102738 91582.0625408247 93330.41847734817 90227.13258839233 89692.62175500733 104584.43981580637 87129.94138065401 119434.90578256271 104841.01505628701 97603.22900109166 1.2785897017775056 0.9383097616555327 0.9562226519811583 0.9244277419078334 0.9189513776639926 1.0715264329486132 0.892695275272906 1.223677812761982 1.0741551906557762 1.0 16.574641256710596 1.7408808056144873 24.999999999997623 1.1175413744085734 0.9904456734466224 0.12834630621855014 0.11810109034216919 0.597797282127956 6481.994554691571 0.052316813419456244 0.029012324367547908 55.06565451036054 -1.7408808056144873 -0.127095700961951 ECELALWAFR ddPTM_BT-474_Trastuzumab_2h_R1 4 ECELALWAFR 10 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ;;; 157.68 2.0346e-05 155268000.0 203347.0 216308.0 219238.0 181147.0 145450.0 183121.0 186366.0 171732.0 228877.0 187099.0 False True 202252.20234597582 223507.68101905248 250104.80474914296 204080.19162657976 163972.19535030745 170462.2762904671 177350.7645927434 184547.5138774266 172473.3301446722 175158.18163648725 1.1546831581394117 1.2760333484330573 1.4278796594737175 1.165119377923867 0.9361378030893553 0.9731904881510717 1.0125177307492634 1.0536048739100603 0.9846718465176406 1.0 17.41829885241812 3.440985722140315 5.041175632155774 1.0018767850356085 1.2878238197734846 0.7918742497644676 0.06793290882594719 0.08234298871272101 5.127045798113291 0.019509412234516667 0.027294612338841097 2760.487100990832 -3.440985722140315 0.2859470347378761 ECFGACLFTCYDLLRPDVVLETAWR ddPTM_BT-474_Trastuzumab_2h_R1 3 ECFGACLFTCYDLLRPDVVLETAWR 25 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 235.92 1.8266e-38 1488414000.0 249238.0 317759.0 272959.0 270127.0 286749.0 291211.0 313139.0 259365.0 315646.0 297648.0 False True 247896.13030094473 328335.4162256281 311389.2545978405 304325.05050325487 323264.7854555196 271080.2690069584 297991.2702628538 278720.1333287835 237859.2727397043 278651.8498107269 0.8896267168846256 1.1782997903966852 1.1174849720515057 1.0921336094124852 1.1601027794184604 0.9728278107290103 1.069403524380919 1.0002450495774673 0.853607370276814 1.0 18.088104205114284 1.5467180072092546 3.2402242211440244 0.925305108465663 1.0755427279332712 0.29210240294827206 0.08733435273232439 0.23534504867016634 5.503290434674537 0.056644723514560236 0.022051569185238973 35.21421465326892 -1.5467180072092546 0.15023761946760816 ECGEHFEEMAKES(ph)MDS(ph)VK ddPTM_BT-474_Trastuzumab_2h_R1 1 ECGEHFEEMAKESMDSVK 18 1 H0Y430;Q6ZRP7 H0Y430 QSOX2 Sulfhydryl oxidase;Sulfhydryl oxidase 2 2 ECGEHFEEMAKES(1)MDS(1)VK 62.999 0.023592 244060000.0 31150.0 106240.0 113080.0 155510.0 145160.0 55552.0 64059.0 35003.0 6085.1 48162.0 True False 30982.291861090336 109776.13417656368 129000.6810910201 175197.5500552006 163645.26556927199 51711.82099534199 60960.22144085581 37615.101601632516 4585.508641162486 45088.259926437306 0.687147650222891 2.4346944050550268 2.861070294162785 3.8856578262510033 3.6294429156561727 1.1469021221868219 1.3520198282283244 0.8342548961304462 0.10170072317370121 1.0 15.460464213234344 2.614567598052943 5.7803414847061445 0.8809488467819575 2.75476249694846 0.5306519154657132 0.8542395643417531 0.1982267033129542 8.558137977951164 0.2991646604981773 0.2810202575174125 411.6874215739678 -2.614567598052943 1.8738136501665026 ECGLWLSLGGFHER ddPTM_BT-474_Trastuzumab_2h_R1 1 ECGLWLSLGGFHER 14 0 Q86X76-2;Q86X76-4;Q86X76;Q86X76-5;Q86X76-3 Q86X76-2 NIT1 Nitrilase homolog 1 0 158.81 5.011e-06 249520000.0 221480.0 308060.0 301760.0 330700.0 247100.0 301700.0 305740.0 279280.0 346270.0 311220.0 False True 220287.5762887411 318313.59087379713 344245.18505506066 372566.586092565 278566.7203235542 280844.18912540853 290950.1881597788 300121.29175510455 260936.39828028 291357.67315115256 0.7560726783209131 1.092518303812305 1.1815209166517153 1.278725842580718 0.9560987953766277 0.9639155409499384 0.998601426943843 1.0300785577711749 0.8955878712859902 1.0 18.15243178021848 ECHGLVDALVTSINHALDAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ECHGLVDALVTSINHALDAGK 21 0 Q9Y446;Q9Y446-2 Q9Y446 PKP3 Plakophilin-3 0 278.36 4.0801e-45 231230000.0 185750.0 208890.0 220110.0 199550.0 186830.0 252030.0 257220.0 193450.0 297150.0 244280.0 False True 184749.9426387652 215842.77737332828 251099.57476958304 224813.0095396776 210621.69307183186 234607.75931480498 244777.28592417843 207886.22131919567 223921.36410600189 228689.84126136985 0.8078624814279105 0.9438231981920061 1.0979918188958866 0.9830476434794433 0.9209927817961626 1.0258774855096058 1.0703461272003867 0.9090312895954232 0.9791487145687505 1.0 17.803032754977135 4.670203846553393 3.7447353205046863 0.9934493600563498 0.799895761228913 0.5113846473891177 0.05577858843664386 0.1885884338913692 4.559876372126089 0.013832460632304361 0.08688500948309068 46795.473554971315 -4.670203846553393 -0.19355359882743672 ECHLNADTVSSK ddPTM_BT-474_Trastuzumab_2h_R1 5 ECHLNADTVSSK 12 0 P63010;P63010-2;P63010-3;A0A087X253 P63010 AP2B1 AP-2 complex subunit beta 0 ;;;; 208.27 6.8772e-08 5680500000.0 9822600.0 9927700.0 9193100.0 9310400.0 9285500.0 11639600.0 11153500.0 9381700.0 13602400.0 11496600.0 False True 9769716.21299345 10258137.493078623 10487408.572142344 10489095.685383182 10467953.3855296 10834981.848671218 10613962.594492355 10081810.093307316 10250270.782821735 10762877.14526554 0.907723472184297 0.953103650132349 0.9744056752292883 0.9745624282255427 0.9725980557284654 1.006699389246248 0.9861640573646526 0.9367207259949244 0.9523727386715276 1.0 23.35956045663701 4.704263894019263 2.181529809561531 0.9729094892726249 0.8932854331775746 0.5255261904088802 0.019495070388659212 0.5350913593506114 3.078877321150011 0.005449484696622722 0.08052292944195358 50613.21139093978 -4.704263894019263 -0.0796240560950503 ECINAAPDS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 5 ECINAAPDSPSK 12 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 ECINAAPDS(1)PSK;ECINAAPDS(0.97)PS(0.03)K;ECINAAPDS(0.976)PS(0.024)K;ECINAAPDS(0.745)PS(0.255)K;ECINAAPDS(0.999)PS(0.001)K 254.72 4.2557e-21 4498400000.0 7447270.0 5952870.0 5455920.0 5225590.0 5411040.0 7327790.0 7045300.0 6637100.0 9654780.0 6959350.0 True False 7407174.7257894855 6151007.679364091 6224066.112293235 5887149.1582081895 6100103.870253196 6821237.125062226 6704491.923340378 7132394.1045109 7275488.83642385 6515198.324800707 1.1369070220922342 0.9441013723173566 0.9553149116889887 0.9036024484163758 0.936288285658563 1.0469730597603688 1.029054157541008 1.0947316948681023 1.116694914524555 1.0 22.635377664902173 2.5855385927064 4.071435939773611 1.0667710309201657 0.9686989595335423 0.27442696840728265 0.0660796560615553 0.2830794551464113 8.11847716950197 0.02243103503267905 0.020808343890750414 385.0690315439606 -2.5855385927064 -0.09807207138662333 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK ddPTM_BT-474_Trastuzumab_2h_R1 6 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 38 0 P68363;P68363-2;F8VVB9;F8VS66;F8W0F6;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;Q9BQE3 TUBA1B;TUBA1C;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1C chain 0 ;;;;; 439.61 6.287899999999992e-244 4781894000.0 1056217.2 1160128.8 1194350.8 1151112.5 1054295.4 1554610.3 1381320.3 1166150.1 1613565.7 1485164.5 False True 1050530.6439519634 1198742.9857953305 1362505.011156746 1296843.2244737758 1188553.6698915802 1447143.7491200126 1314500.5599330226 1253174.1420522225 1215924.0539076417 1390380.0300967 0.7555708663903205 0.8621693061226999 0.9799515108556217 0.9327257270687218 0.8548408666434293 1.0408260459691476 0.9454253739832555 0.9013177080550165 0.874526408310881 1.0 20.40704783543884 4.574532526762948 3.0573046522263825 0.9361356427029579 0.7529628401674059 0.5310306313422677 0.05399538169266862 0.2258069254019337 3.540201810945832 0.013176331015081016 0.08011174124185559 37543.30717191328 -4.574532526762948 -0.18317280253555202 ECLIDPDLTQYAIIMLDEAHER ddPTM_BT-474_Trastuzumab_2h_R1 4 ECLIDPDLTQYAIIMLDEAHER 22 0 Q14562;F5H658 Q14562 DHX8 ATP-dependent RNA helicase DHX8 0 ;;; 193.87 5.6223000000000005e-18 176835000.0 229643.0 307123.0 286198.0 334473.0 299602.0 298448.0 301329.0 272685.0 319434.0 317658.0 False True 228406.62760373566 317345.40339522593 326492.19072238915 376817.24750571087 337754.5388198196 277816.9922310237 286752.5650814351 293034.13936637325 240713.7708963034 297384.794479304 0.7680507942702876 1.0671204758497195 1.0978778901391033 1.2671032766335162 1.1357491878870258 0.9342003941978879 0.9642475688224575 0.9853702839092753 0.8094353691410927 1.0 18.18197135756985 2.7258927119184557 24.17222239147263 0.943864315764617 1.079989250487504 0.20201046399081513 0.12624025321280294 812.384862368206 1550146.9671278787 0.04224113943171439 0.04008933032303094 531.9768235114396 -2.7258927119184557 0.1361249347228869 ECLPLIIFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ECLPLIIFLR 10 0 P62701 P62701 RPS4X 40S ribosomal protein S4, X isoform 0 ; 155.1 3.0955e-05 459310000.0 463070.0 513070.0 461870.0 466500.0 447020.0 502500.0 462780.0 448400.0 580010.0 526850.0 False True 460576.8825719133 530147.2247926353 526897.2813539931 525558.8521686769 503945.34730487736 467763.35775776516 440393.5634087209 481861.88492906385 437074.30723581376 493225.9819410224 0.933804988860029 1.0748566462502938 1.06826748923579 1.0655538666077828 1.0217331725341605 0.9483753388597806 0.8928839508324625 0.9769596545436704 0.8861542644525102 1.0 18.91188927383321 2.7687424088146098 3.7104678031463014 0.9376720426169167 1.0407758670994482 0.4673897492983411 0.04912988592825709 0.19023604175892217 5.680276197865884 0.015301793410158733 0.01566134068205124 587.1410008595822 -2.7687424088146098 0.10310382448253153 ECLQALEFLHANQVIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ECLQALEFLHANQVIHR 17 0 Q13177;H7C1X3 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 0 ; 233.52 2.383e-20 1634860000.0 561290.0 676050.0 627800.0 657840.0 666690.0 724050.0 691480.0 445410.0 746470.0 672810.0 False True 558268.0770051816 698551.9155691448 716188.7830645773 741122.4765501445 751589.0197187789 673998.1277303677 658030.4706898801 478648.75594615133 562512.4706855371 629870.689778379 0.8863217261333577 1.1090401996875443 1.1370409747381154 1.1766263910627586 1.1932433623530356 1.070057931997939 1.0447072412933027 0.7599159060958443 0.8930602420688252 1.0 19.26469615326568 1.9147980875906867 5.472716483463584 0.8638972503186646 1.1025986174585152 0.484912418464417 0.09650949005491721 0.16810142757605157 8.110323761866837 0.043427815596329016 0.026135483403919933 82.18604613305784 -1.9147980875906867 0.23870136713985057 ECPFLHIDPESK ddPTM_BT-474_Trastuzumab_2h_R1 2 ECPFLHIDPESK 12 0 O95639;C9K0K2;B7Z7B0;H7C016;O95639-3;O95639-2 O95639 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 0 ; 127.37 0.00027088 574470000.0 1124560.0 1073690.0 939230.0 917680.0 916310.0 1152010.0 1109490.0 1058590.0 1417850.0 1066680.0 False True 1118505.493910361 1109427.1225906888 1071465.4200664929 1033858.193908149 1032996.6471051215 1072374.2602398468 1055819.7300366093 1137587.361211102 1068439.8657166248 998603.569169306 1.1200695936234197 1.1109785272583914 1.0729637397128446 1.0353039242270783 1.0344411726511509 1.0738738507933707 1.0572961710069781 1.1391781446940055 1.0699339544774635 1.0 19.92955253753748 ECPGIEPVCVDLGDWEATER ddPTM_BT-474_Trastuzumab_2h_R1 4 ECPGIEPVCVDLGDWEATER 20 0 Q7Z4W1;J3KS22;J3QS36 Q7Z4W1 DCXR L-xylulose reductase 0 ;;; 306.27 3.749699999999998e-55 814110000.0 655640.0 797680.0 692010.0 737240.0 699650.0 798760.0 678310.0 663460.0 852170.0 729260.0 False True 652110.1070884513 824230.2965922581 789438.9929412525 830574.5084090799 788746.2803495543 743543.6012787898 645497.5539041655 712970.7541816165 642164.1219929713 682718.002449102 0.9551675871284314 1.2072778125602541 1.1563178209880394 1.2165703927969893 1.1553031815773114 1.0890932985676212 0.945481958273524 1.0443122220653174 0.9405993685377381 1.0 19.38093026894219 2.4304339250286353 4.2792435778913 0.9915453269641749 1.1458500432381888 0.5006631411438754 0.07289179293330803 0.17218094726833716 6.812194488753516 0.025194594555269335 0.021216720424023595 269.42253929749296 -2.4304339250286353 0.154304716274014 ECPPHAEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ECPPHAEQR 9 0 J3QT73;A0A087X1P5;J3KQ34;Q9H9Q2-2;Q9H9Q2 J3QT73 COPS7B COP9 signalosome complex subunit 7b 0 ; 79.20100000000002 0.027611 151735000.0 39243.0 68663.0 64456.0 69896.0 65407.0 54837.0 65751.0 53814.0 51640.0 48513.0 False True 39031.72004830717 70948.40644733993 73530.84453840459 78744.82643340173 73736.19375233796 51046.24726241303 62570.37293678807 57829.87394195508 38914.01394054832 45416.858805931064 0.8594103835998881 1.562160138606386 1.6190209202403507 1.7338237056394201 1.6235423516940504 1.1239493131952758 1.3776904564041954 1.2733129384633481 0.8568187004484439 1.0 15.470940307042524 1.5482142184708765 1.148435675551596 0.926723196472013 1.4682325089780517 0.3478140286488155 0.25301470649326224 0.49941527879681785 1.2639300028247407 0.22905785658145847 0.08207567730865141 35.33574225726698 -1.5482142184708765 0.5415093125060387 ECPSDECGAGVFMASHFDR ddPTM_BT-474_Trastuzumab_2h_R1 12 ECPSDECGAGVFMASHFDR 19 0 P62979;A0A2R8Y422 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ;;;;;;;;;;; 330.38 2.2674e-75 34073130000.0 6094990.0 7114310.0 6299408.0 6532389.0 6227595.0 6833479.0 6582152.0 6181881.0 7993090.0 7030130.0 False True 6062175.251057053 7351105.507658794 7186309.890964098 7359388.777619064 7020642.309402516 6361096.681009299 6263748.161497565 6643204.351175665 6023300.071418622 6581461.084602897 0.9210987002930556 1.1169412708154507 1.09190190424072 1.1181998469665198 1.0667300496278962 0.9665174038468247 0.9517260804217759 1.0093813920312031 0.91519192987556 1.0 22.649976467193007 2.746284802596651 9.828632512058254 0.9710632972573305 1.0706879037045582 0.39906851649677033 0.05749858580535992 0.2056329344969786 232.3341787971651 0.017455601969952023 0.017803593032972943 557.5512612708385 -2.746284802596651 0.0996246064472277 ECREPELGLEELLR ddPTM_BT-474_Trastuzumab_2h_R1 3 ECREPELGLEELLR 14 1 Q9NZL4;Q9NZL4-3;Q9NZL4-2 Q9NZL4 HSPBP1 Hsp70-binding protein 1 0 ;; 118.19 0.00023688 139157000.0 98720.0 133665.0 114086.0 137475.0 123605.0 123718.0 134023.0 117253.0 150653.0 129194.0 False True 98188.50248882316 138113.9587228012 130148.31714671147 154879.3209043706 139345.3640857664 115165.66586084622 127539.79547242113 126003.01425866969 113526.58679677424 120948.72831145185 0.8118192217447757 1.1419215451951477 1.0760618897254546 1.2805369933741262 1.1521027631389547 0.9521858350117264 1.0544947206389537 1.0417886654765207 0.9386339846784908 1.0 16.884036074937725 2.741700896682424 24.913382039070555 1.0081957429921524 1.1047693137048054 0.1382914094806028 0.11509739251693923 543.6616238181795 4313138.125680266 0.036242097468633626 0.036910124151361766 551.6973484649875 -2.741700896682424 0.09657357071265293 ECSEAMEVETSVISIDS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ECSEAMEVETSVISIDSPQK 20 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 ECSEAMEVETSVISIDS(1)PQK;ECSEAMEVETSVIS(0.001)IDS(0.999)PQK 197.49 1.0626e-21 122342000.0 255740.0 211433.0 196067.0 182775.0 190021.0 264820.0 267000.0 229430.0 335420.0 252490.0 True False 254363.12425538522 218470.41959105243 223671.5293550854 205914.29625965696 214219.04800729282 246513.6167192265 254084.18996094997 246551.23162193413 252760.23539772886 236375.87203243532 1.0760959740446001 0.9242500840401937 0.9462536401532274 0.8711307735816689 0.9062644430049859 1.042888238125252 1.0749159285008782 1.043047369860586 1.0693148722177757 1.0 17.85072325497906 2.7027539851928513 9.669000793395226 1.0506788401596114 0.9396617979555807 0.4725719878702489 0.053224330855441725 0.44220571890767807 116.8239555916889 0.017238679199169306 0.01632611263715253 504.37550301903474 -2.7027539851928513 -0.11101704220403075 ECSPTS(ph)SLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ECSPTSSLER 10 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 ECS(0.031)PT(0.434)S(0.53)S(0.006)LER;ECS(0.275)PT(0.275)S(0.45)SLER 202.2 2.3917e-07 913510000.0 728090.0 780230.0 646450.0 617470.0 631740.0 752850.0 720650.0 661410.0 824130.0 706650.0 True False 724170.0443384046 806199.4838910059 737464.5409558723 695641.638689375 712188.3443836579 700807.251518275 685789.4063496583 710767.7727719268 621034.2042762215 661550.9920064972 1.0946549141162687 1.2186505554859601 1.114750865566882 1.051531396815656 1.0765433851494601 1.059339733423591 1.0366387695522086 1.074396050130851 0.9387548530350056 1.0 19.335492837410325 3.432380267296674 0.37084540194174836 0.992073746344491 1.1983688820058003 0.5740120202592305 0.045379605396299656 1.7785101494083404 0.38191958993216796 0.045935669127079304 0.15082530200085995 2706.3269809537346 -3.432380267296674 0.2062951356613093 ECYQSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ECYQSHR 7 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 88.35799999999998 0.018666 59384000.0 58609.0 65605.0 58011.0 60067.0 59554.0 54552.0 53366.0 54358.0 65294.0 58512.0 False True 58293.45565607209 67788.62276594 66178.44455934889 67671.47604119175 67137.84889578684 50780.948641595234 50784.482702082656 58414.46998433109 49203.16859477467 54777.71406535652 1.0641819698156965 1.237521936111826 1.208127167927999 1.2353833524424074 1.225641669086139 0.9270366518217125 0.9271011682139665 1.0663911589051611 0.8982333314615732 1.0 15.741301441587892 2.7416191990283765 24.99993776877271 0.9729398067163687 1.1996444926537826 0.762940262322592 0.06408168786053396 130.98073454903746 1070599.8288962569 0.019951259504980293 0.02035906021278907 551.593575237732 -2.7416191990283765 0.22670468593741389 EDAANNYAR ddPTM_BT-474_Trastuzumab_2h_R1 8 EDAANNYAR 9 0 P68363;P68363-2;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;F8VX09;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2;Q9BQE3;F5H5D3;A0A1W2PQM2;A6NHL2-2;A6NHL2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha chain-like 3 0 ;;;;;;; 243.85 3.7491000000000005e-10 30607036000.0 6200228.0 7363953.0 6586397.0 6655545.0 6640464.0 7165273.0 7118810.0 6686761.0 7755310.0 7087481.0 False True 6166846.66135809 7609057.72400141 7513704.447611009 7498136.314591596 7486087.729286229 6669954.542748361 6774445.9638049165 7185761.06050436 5844117.766329865 6635151.894682228 0.9294205708087161 1.1467797338746268 1.132408807947999 1.130062496474423 1.1282466246606937 1.005245192366135 1.020993350466374 1.0829836565253947 0.8807813082641951 1.0 22.661698062078116 2.729723915146818 24.032162139581423 1.0116088645690864 1.10055587440909 0.27603800932717326 0.0751994073653158 546.2339368707445 1485526.1333312169 0.023883602455349377 0.022837284524551336 536.6905089864589 -2.729723915146818 0.08894700984000359 EDAEGVAAEEEQEGDS(ph)GEQETGATDARPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDAEGVAAEEEQEGDSGEQETGATDARPR 29 1 Q96KC8 Q96KC8 DNAJC1 DnaJ homolog subfamily C member 1 1 EDAEGVAAEEEQEGDS(1)GEQETGATDARPR 145.06 3.8265e-08 284210000.0 31541.0 44739.0 45203.0 39446.0 42371.0 61879.0 38246.0 31868.0 38003.0 47527.0 True False 31371.18676053455 46228.110569703385 51567.18948848058 44439.85955551049 47766.69569740716 57601.45037749802 36395.89486609175 34246.1519824251 28637.66986411036 44493.78617008816 0.7050689424498664 1.038979024913397 1.158975082303687 0.9987879967244971 1.0735588002065617 1.2945953881583074 0.8179995005810411 0.769683925110598 0.643633017757491 1.0 15.441316248492427 2.0334259361568376 24.40824989358776 0.7825965794480271 1.04969985221983 0.33877046474212913 0.16146312933908086 144.60989981032714 105596.15274072607 0.059603553742043944 0.044019846376466956 108.00054228858295 -2.0334259361568376 0.2671032727718029 EDAEHHPDEDVDESES ddPTM_BT-474_Trastuzumab_2h_R1 2 EDAEHHPDEDVDESES 16 0 Q5JY65;Q9BZJ0-2;Q9BZJ0-3;Q9BZJ0 Q5JY65 CRNKL1 Crooked neck-like protein 1 0 ; 184.21 1.8593e-09 1156850000.0 822640.0 856080.0 811020.0 807410.0 776840.0 855110.0 832490.0 552480.0 916320.0 780500.0 False True 818210.997643896 884574.1052887129 925204.5664877885 909628.0232143865 875765.9693085778 795998.2584124224 792219.2782793682 593708.8630365947 690505.2140589316 730687.8217803321 1.119781900361104 1.2106046918004387 1.266210464865164 1.2448928202991858 1.1985501101890006 1.0893821337722043 1.08421032165161 0.8125342250675726 0.9450071473430404 1.0 19.47889563688652 2.1906886645253225 1.7301347015279553 0.9045483669083819 1.2105688431253934 0.7657017858666841 0.06635018065041527 0.15322391698473364 0.9026733442669522 0.03594184282813066 0.021371734604978952 155.12745391111108 -2.1906886645253225 0.30602047621701145 EDAFYSWESSKDPAEQQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDAFYSWESSKDPAEQQGK 19 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 151.04 6.345e-08 406150000.0 225480.0 147480.0 138240.0 117790.0 110590.0 171160.0 153980.0 178810.0 230570.0 173670.0 False True 224266.04073318312 152388.7826464575 157702.99039637987 132702.20192271928 124672.98098171526 159328.11206730152 146531.39913927752 192153.71017878214 173749.11297971001 162586.23191363245 1.3793667403050194 0.937279749046697 0.9699652211643197 0.8161958141278046 0.7668114299367174 0.9799606657465211 0.9012534297314706 1.1818572084311312 1.0686582186861149 1.0 17.31084556708392 1.7469605020241616 24.999999999999726 1.0975022025315144 0.9508733136591176 0.09801103127070587 0.16029202996217348 3.8213173499004096 11401.380913258909 0.07483069321385405 0.04149764429384137 55.841940560611846 -1.7469605020241616 -0.14662888887239678 EDAIEHFMK ddPTM_BT-474_Trastuzumab_2h_R1 3 EDAIEHFMK 9 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;; 126.07 0.0004839 1466610000.0 3814430.0 3480880.0 3044340.0 2732260.0 2782470.0 3875240.0 3377690.0 3322760.0 4648150.0 3684480.0 False True 3793893.5327030094 3596738.986563607 3472956.6101223547 3078163.8358550677 3136801.061508216 3607353.7801337303 3214298.2306711674 3570721.223833397 3502675.7145189685 3449333.3319579735 1.0998918247629754 1.0427345345954027 1.0068486504176075 0.8923938453080104 0.9093934275489831 1.045811881012398 0.9318607166465436 1.0351916965376375 1.0154645484873206 1.0 21.717886122050423 4.389889822900347 2.35855443949161 0.9772753896897045 1.0953840594373256 0.38559762880514026 0.049461249738960475 0.3557572214874418 3.594395828155835 0.013312185163062012 0.06339595945271471 24540.862542948285 -4.389889822900347 0.11810866974762113 EDAKEDHER ddPTM_BT-474_Trastuzumab_2h_R1 1 EDAKEDHER 9 1 P57740;P57740-2;P57740-3 P57740 NUP107 Nuclear pore complex protein Nup107 0 133.91 0.00015842 91305000.0 178570.0 150740.0 133430.0 127010.0 135050.0 105500.0 157990.0 158370.0 248460.0 178210.0 False True 177608.5989609923 155757.2897757456 152215.78420564943 143089.4529773714 152247.81699593682 98207.03332028688 150347.42011958983 170188.3735865653 187230.36219342836 166836.48522674298 1.0645668944632178 0.9335924906597022 0.9123650860828016 0.857662835457738 0.9125570871924142 0.5886424254671653 0.9011663121244534 1.0200908593540967 1.122238711388391 1.0 17.34807529858934 1.6857771714546521 3.8102180765296616 1.0613788035639786 0.8731052349242354 0.30616022421008415 0.11520343632244491 0.22604199505297826 7.659297300531529 0.06815633615420566 0.031824085573010856 48.50395713857268 -1.6857771714546521 -0.1882735686397432 EDALDDSVSSSSVHAS(ph)PLAS(ph)SPVRK ddPTM_BT-474_Trastuzumab_2h_R1 3 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37 P49792 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 2 EDALDDSVSSSSVHAS(1)PLAS(0.681)S(0.319)PVRK;EDALDDSVSSSSVHAS(1)PLAS(0.698)S(0.302)PVRK;EDALDDSVSSSSVHAS(0.994)PLAS(0.535)S(0.471)PVRK 215.53 1.7527e-33 2625410000.0 403186.0 503939.0 468359.0 428407.0 428550.0 516236.0 510934.0 424505.0 480966.0 432710.0 True False 401015.2913741757 520712.3049774416 534299.876150593 482643.2822744403 483123.30228514393 480549.82040883147 486218.17046257766 456183.7186927122 362438.3739142092 405094.07733833086 0.9899312624095745 1.2854108072840262 1.3189525743284336 1.191435049965791 1.1926200093062427 1.1862672087587216 1.2002598844625731 1.126117966695701 0.8947017352008926 1.0 18.627897466750518 1.4082074111579679 3.5336513436006287 0.9493244009774822 1.2011079037235766 0.5633865365330737 0.08534361477110136 0.15935233434524876 3.3910343727744845 0.06355271704696416 0.021578996747966834 25.598081128957208 -1.4082074111579679 0.2517835027460944 EDALDDSVSSSSVHAS(ph)PLASSPVRK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37 P49792 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 1 EDALDDSVSSSSVHAS(0.435)PLAS(0.282)S(0.282)PVRK;EDALDDSVSSSSVHAS(0.333)PLAS(0.333)S(0.333)PVRK 162.47 9.0949e-12 822540000.0 180697.0 373340.0 301120.0 314340.0 332910.0 220790.0 211430.0 170175.0 111901.0 215850.0 True False 179724.14742932413 385766.3962112046 343515.07861803996 354135.41176999366 375304.1151878363 205527.30698375523 201202.3231589653 182874.3226311408 84324.49794657825 202074.26820151752 0.8893965027258945 1.9090327513966352 1.6999446870468007 1.7525012705567933 1.8572583165985597 1.0170879687600511 0.9956850268452653 0.9049856978760419 0.417294585288247 1.0 17.6245260974827 2.604575320604968 4.185046614887044 0.8523787699701303 1.647454077947189 0.6042991484089235 0.30698642988378294 0.15698642457929404 4.593549663353309 0.1006911581837676 0.093955557508474 402.3234257458401 -2.604575320604968 0.7950753079770586 EDALDDSVSSSSVHASPLAS(ph)SPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDALDDSVSSSSVHASPLASSPVR 24 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37 P49792 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 1 EDALDDSVSSSSVHASPLAS(0.581)S(0.419)PVR 167.3 1.2933e-15 0.0 36586.0 78201.0 91686.0 94858.0 94381.0 80708.0 84726.0 76570.0 55104.0 87557.0 True False 36389.02504108675 80803.87301149732 104594.59185100172 106867.01307399025 106399.86090998538 75128.84592619637 80627.47969524884 82284.04221458164 41524.35755577023 81969.03729868085 0.4439362256810642 0.9857853120448654 1.276025622575965 1.30374854452158 1.2980494149550992 0.9165515224052222 0.9836333614783883 1.0038429744484245 0.506585888089215 1.0 16.32279143353286 1.3981858822199722 8.741890301790312 0.7503608123848018 1.047006181288945 0.1454638206039266 0.26300370864661266 0.5059673788817879 49.50553488220215 0.17799873441022096 0.06578677622398764 25.014157626410793 -1.3981858822199722 0.2966453689041433 EDALDDSVSSSSVHASPLAS(ph)SPVRK ddPTM_BT-474_Trastuzumab_2h_R1 7 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37 P49792 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 1 EDALDDSVSSSSVHASPLAS(0.5)S(0.5)PVRK;EDALDDSVSSSSVHAS(0.001)PLAS(0.654)S(0.345)PVRK;EDALDDSVSSSSVHASPLAS(0.884)S(0.116)PVRK;EDALDDSVSSSSVHASPLAS(0.925)S(0.075)PVRK;EDALDDSVSSSSVHASPLAS(0.915)S(0.085)PVRK;EDALDDSVSSSSVHASPLAS(0.5)S(0.5)PVRK;EDALDDSVSSSSVHASPLAS(0.5)S(0.5)PVRK 300.15 1.6519e-63 11057380000.0 1314258.0 2503831.0 3075821.0 2942165.0 3234379.0 3655358.0 3660628.0 3429894.0 2801071.0 3687279.0 True False 1307182.1809557914 2587169.501237198 3508869.8612846043 3314642.7873330275 3646257.9939837214 3402671.7052471796 3483549.438683044 3685850.1069288296 2110784.584478419 3451953.6973816226 0.37867894402735347 0.7494797810293975 1.0164881017802045 0.9602222619171432 1.0562882105717357 0.98572344925373 1.0091530026388789 1.067757690297127 0.6114753468679177 1.0 21.718981682448828 4.628840296486153 2.290603662006415 0.9773225538131055 0.30281601763131666 0.6741121702228239 0.12428530987260976 0.24649352785653106 1.8123218838900286 0.030051890490502765 0.30249797751349217 42544.19362058212 -4.628840296486153 -0.6745065361817888 EDALDDSVSSSSVHASPLASS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDALDDSVSSSSVHASPLASSPVR 24 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37 P49792 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 1 EDALDDSVSSSSVHASPLAS(0.037)S(0.963)PVR 217.26 8.148399999999999e-33 256780000.0 29283.0 56458.0 58683.0 68081.0 57077.0 58633.0 54758.0 66216.0 44395.0 55338.0 True False 29125.34358164717 58337.17040041833 66945.05631822009 76700.04761949774 64345.41762811615 54579.838717235885 52109.146344126275 71157.37415803495 33454.447112522124 51806.28146275463 0.5621971459693823 1.1260636500683605 1.29221890527598 1.480516367009281 1.2420389151917097 1.0535370842332172 1.0058461034612063 1.3735279226553347 0.6457604400071391 1.0 15.660839413479613 -0.7028303523309083 7.3407014977102065 1.0000477079816457 1.1245023190339891 0.0 0.2819932897811782 0.0 0.0 0.26548886732800553 0.06257632613905613 0.19823012173290497 0.7028303523309083 0.12445461105234346 EDALICFEEHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDALICFEEHIR 12 0 O75400-3;O75400;O75400-2;F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 O75400-3;F8VU11 PRPF40A;PRPF40B Pre-mRNA-processing factor 40 homolog A;Pre-mRNA-processing factor 40 homolog B 0 136.7 0.00010532 34323000.0 74264.0 77005.0 67583.0 66163.0 61049.0 70646.0 64928.0 64494.0 74391.0 70310.0 False True 73864.170875506 79568.06487449442 77098.09895803343 74539.22901615477 68823.22828422759 65762.40830279616 61787.184590953475 69306.86977389625 56058.33483832937 65822.7556045805 1.122167709283291 1.2088230604091788 1.1712985615671838 1.1324234048166728 1.0455841243972213 0.9990831848161013 0.9386903362437443 1.052931757981176 0.8516558494617075 1.0 16.006298804277385 3.1221088008279927 1.608354744280027 0.9730567177616912 1.17310765607015 0.749053348346364 0.05223772025179571 0.1806888410713341 0.9665884870442354 0.017540299816790873 0.022965631071657007 1324.6733549896646 -3.1221088008279927 0.20005093830845888 EDAMAMVDHCLK ddPTM_BT-474_Trastuzumab_2h_R1 4 EDAMAMVDHCLK 12 0 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;; 168.02 4.7664e-05 6309300000.0 7161440.0 6834590.0 6869830.0 6076900.0 5991810.0 8555410.0 7947640.0 7333750.0 10107640.0 7665730.0 False True 7122883.602750787 7062075.196553092 7837042.350367194 6846234.916921407 6754831.4872597065 7963994.643968885 7563182.290266834 7881031.665027932 7616747.557436944 7176496.548438353 0.9925293706579942 0.9840560988062957 1.0920429345252844 0.953980103064522 0.9412436056601458 1.109732944231945 1.0538822445211968 1.0981725709521717 1.0613462301593932 1.0 22.774848284440033 2.730848554442332 24.968320159714334 1.0719809307650532 0.9956464147577854 0.36552276827446895 0.04676026310410932 600.924714436439 1945529.930939321 0.014930878079932977 0.014311942533922801 538.0821118020349 -2.730848554442332 -0.07633451600726782 EDAMAMVDHCLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDAMAMVDHCLKK 13 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 196.57 9.1377e-08 852030000.0 1828000.0 1813900.0 1664700.0 1712300.0 1683600.0 2173200.0 2151200.0 1865200.0 3286700.0 2177400.0 False True 1818158.2511098913 1874274.5649742954 1899075.2901682106 1929077.004433925 1897996.4805209837 2022971.7991625352 2047138.2376179607 2004390.6952936887 2476736.824523628 2038436.467834074 0.8919376589851545 0.9194667553047617 0.9316332984299772 0.9463513015363446 0.9311040645469251 0.9924134654596468 1.0042688452258375 0.9832980948498432 1.2150179137813732 1.0 20.95903156222174 2.0561200465881115 0.9321629849336797 1.0804066198406517 0.9218524380861327 0.530336084424049 0.058811904595954693 0.453009111645692 0.7285313389850843 0.04572738509701244 0.02283320093335033 113.79417893609286 -2.0561200465881115 -0.15855418175451896 EDAPIGPHLQSMPSEQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDAPIGPHLQSMPSEQIR 18 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 191.64 2.1534e-14 1384540000.0 347400.0 439430.0 407530.0 407030.0 425450.0 439890.0 441170.0 380870.0 470460.0 457580.0 False True 345529.63699976885 454056.16190895543 464906.6816857395 458559.956266274 479628.5356602841 409481.439689678 419828.92166693753 409292.453418672 354521.4368410222 428376.8526460525 0.8066020254489885 1.0599456042134017 1.0852749834965287 1.0704592310106922 1.119641578898705 0.9558906770063348 0.980045768284829 0.9554495087456347 0.8275924216053441 1.0 18.708521000568464 2.103713724188346 1.600582278989001 0.9228481762123163 1.0323225329195267 0.16352429877565877 0.0913056212513274 0.6398423270264073 3.125000714266948 0.055279133315341476 0.029501749418095732 126.97368512427626 -2.103713724188346 0.1094743567072104 EDAS(ph)PLPHVCCCK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDASPLPHVCCCK 13 0 C9J7Z4;Q8NCE0-5;Q8NCE0-3;Q8NCE0-2;Q8NCE0 C9J7Z4 TSEN2 tRNA-splicing endonuclease subunit Sen2 1 EDAS(1)PLPHVCCCK 90.707 0.004423300000000001 166890000.0 185770.0 179600.0 154980.0 145500.0 159650.0 189530.0 160460.0 201210.0 271420.0 188890.0 True False 184769.83496098727 185577.87742950732 176799.83688969148 163920.2850815488 179980.4811803131 176428.23720563005 152697.93678327353 216225.3119236776 204532.17784166607 176834.8784831347 1.0448721233385492 1.0494415978418334 0.9998018400343653 0.9269680647145772 1.0177883612337166 0.9977004464221495 0.863505763642871 1.2227526253781416 1.1566280339948487 1.0 17.432043330907817 1.7198600710028307 13.736438409392708 1.1413177030716166 0.9881647852369013 0.4298484547841056 0.07362954511912607 0.09949463134743393 58.8247961558276 0.03342486510872179 0.018390380593973726 52.4638395351407 -1.7198600710028307 -0.1531529178347153 EDCCPGKPLNVFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDCCPGKPLNVFR 13 1 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;Q9P2J5-3 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 101.38 0.0017961 680990000.0 340435.0 369940.0 330750.0 308736.0 303680.0 368910.0 339680.0 324390.0 459630.0 349810.0 False True 338602.13578588405 382253.22926654795 377316.7250694631 347821.945944585 342351.84794762003 343408.1200207308 323248.3806963882 348597.629019043 346360.34522645694 327484.82631259126 1.033947555978307 1.167239513264285 1.1521655195996965 1.0621009524654481 1.0453975892636866 1.0486229969413619 0.9870636888313131 1.0644695601447474 1.0576378427251119 1.0 18.321068536779364 3.551130396946247 4.178970569750536 1.0372146149351336 1.1222734523380438 0.4639023791931889 0.04005745105148345 0.19060540476142074 6.284104169065457 0.010688932998944514 0.016657930105609432 3557.381129270638 -3.551130396946247 0.0850588374029102 EDCSPADKPYIDEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EDCSPADKPYIDEAR 15 1 Q96DG6 Q96DG6 CMBL Carboxymethylenebutenolidase homolog 0 ;;; 164.41 1.3525e-06 3131050000.0 4512250.0 4126670.0 3669030.0 3305550.0 3119810.0 4467960.0 4095310.0 4031020.0 6226260.0 4458800.0 False True 4487956.547358106 4264023.7163253045 4185597.5322195357 3724032.2910743193 3517099.310937379 4159100.4416465387 3897204.2096965523 4331835.181504808 4691881.65060958 4174235.5666292626 1.075156510867971 1.021510082088766 1.0027219272628276 0.8921471324823944 0.8425732699550237 0.9963741564793992 0.9336330323215525 1.0377553236658392 1.1240097919050414 1.0 21.993080588417556 1.5896027215485629 4.923815680248651 1.0674567752449202 0.9636659737237391 0.2576043840586367 0.06850113422479709 0.20227829053289018 10.641192575005448 0.04127166675809637 0.0188244970932878 38.86894218896941 -1.5896027215485629 -0.10379080152118114 EDCSVLAFVLDHLLPHTQNAEDKDTPALAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDCSVLAFVLDHLLPHTQNAEDKDTPALAR 30 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 191.42 1.2411e-18 68076000.0 85583.0 77931.0 74267.0 58610.0 59528.0 88537.0 82103.0 46659.0 118020.0 70794.0 False True 85122.2306371652 80524.88622471559 84723.14805966393 66030.0199905814 67108.53794990097 82416.64558368018 78131.36422608206 50140.93150960123 88935.55238697749 66275.86631020722 1.284362398806629 1.2149956040984087 1.2783408618623462 0.9962905604511433 1.0125637232080287 1.2435393178857188 1.1788810705300274 0.7565488661425308 1.3418995078949338 1.0 16.016196002631744 3.7454500066598864 24.677881095026258 1.057883304792085 1.2548092356207698 0.22731254998813877 0.1525734355774744 650.6933442664871 2330783.564031068 0.04023593146106343 0.07055708066617511 5564.805719112281 -3.7454500066598864 0.19692593082868481 EDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_BT-474_Trastuzumab_2h_R1 7 EDDDVIVNKPHVSDEEEEEPPFYHHPFK 28 1 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-7 SON Protein SON 1 EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK 252.14 9.736799999999999e-54 9907480000.0 6499600.0 4798520.0 4126730.0 3694770.0 4099290.0 5804250.0 5181570.0 4410390.0 8410560.0 5356690.0 True False 6464606.87577345 4958235.837433411 4707737.713819822 4162527.5031666947 4621310.28310458 5403015.859234846 4930917.663580375 4739515.697306639 6337890.183730025 5014821.4581069555 1.2891001065098286 0.9887163239716006 0.9387647702211408 0.830045005179109 0.9215303718607517 1.077409416141892 0.9832688371405642 0.9451015827581941 1.2638316711124775 1.0 22.257766907033226 -0.12011814500370337 7.925677379791981 0.999999995289913 1.0085396487414762 0.0 0.14070774110649337 0.0 0.0 0.13282914179472102 0.031308128967412245 0.7583712404684335 0.12011814500370337 0.008539653451563156 EDEEEDDDVVAPKPPIEPEEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDEEEDDDVVAPKPPIEPEEEK 22 1 Q13409-2;Q13409-3;Q13409-6;Q13409;Q13409-5;Q13409-7;E7EQL5;E7EV09;E7EQU2;E7EMU4;E7ESD3 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 121.47 9.1532e-06 0.0 229540.0 129850.0 81122.0 92471.0 107530.0 178720.0 159790.0 162910.0 308570.0 148910.0 False True 228304.1821442912 134171.97875401736 92543.27247493582 104177.8191187347 121223.30811975634 166365.50706162746 152060.34724292226 175067.1714402183 232527.05812616178 139406.43631173493 1.637687528528215 0.9624518229128783 0.6638378752326354 0.7472956190184544 0.8695675129997712 1.1933846920066715 1.0907699189934903 1.2558040795816652 1.6679793578984714 1.0 17.088937645547468 2.0817871385712663 1.500503990025728 1.333705174055402 0.9588660883346861 0.16672006077076618 0.2944756368852436 0.6513443208721789 2.7717771687307957 0.19123557825117016 0.09834078891534526 120.7221992488655 -2.0817871385712663 -0.3748390857207159 EDEEESLNEVGYDDIGGCR ddPTM_BT-474_Trastuzumab_2h_R1 6 EDEEESLNEVGYDDIGGCR 19 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 495.24 1.211499999999999e-266 4265020000.0 2234220.0 2088705.0 1682477.0 1697942.0 1847374.0 2036560.0 1777457.0 1914656.0 2419960.0 2061670.0 False True 2222191.2077651797 2158226.2832761644 1919355.1372477573 1912901.2831060835 2082626.1286564383 1895777.4007465763 1691474.6143648704 2057537.3531461698 1823593.28380266 1930092.455515509 1.1513392539383063 1.11819839360997 0.9944368891567509 0.9910930834632822 1.0790292054170996 0.9822210305672805 0.8763697353104745 1.066030462564873 0.9448217252968827 1.0 20.8802385266201 4.288077349483924 4.026691946781761 0.9939390732574188 1.1435162697960897 0.5327287874438401 0.05386475852543629 0.15913058540004496 5.252841161032024 0.013326726765368703 0.038954960879725935 19412.31587467268 -4.288077349483924 0.14957719653867085 EDEEESLNEVGYDDIGGCRK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDEEESLNEVGYDDIGGCRK 20 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 246.9 7.1313e-30 4146400000.0 1680520.0 1397100.0 1171620.0 1218390.0 1240240.0 1606610.0 1338360.0 1361970.0 2683400.0 1783620.0 False True 1671472.267043324 1443601.6289352167 1336573.9120964012 1372638.0490756587 1398177.21252159 1495548.8322531402 1273618.4137683036 1463607.1173435254 2022112.0257178051 1669787.844566093 1.0010087643665107 0.8645419438361929 0.8004453478601768 0.8220433832612724 0.8373382385502495 0.8956520058042282 0.7627426549504335 0.8765228002506239 1.210999368751104 1.0 20.67123338158288 1.3157208571916978 7.385430377113426 1.1036655511702846 0.8507051446759398 0.626118157715983 0.07661480517996988 0.11949622061033516 9.423118117416168 0.0492974680485551 0.017819609172822038 20.688111928205405 -1.3157208571916978 -0.2529604064943448 EDEIPVLKDELIHELK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDEIPVLKDELIHELK 16 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 ; 190.81 4.7916e-10 99442000.0 253040.0 186280.0 166298.0 143526.0 143881.0 234860.0 216850.0 221900.0 357490.0 220750.0 False True 251677.66075538693 192480.21719136208 189711.31291187208 161696.37688394764 162203.39250049874 218624.68100097275 206360.13705255452 238459.3047853687 269391.37962057727 206661.5460064168 1.2178253072178817 0.9313789667739427 0.9179807108671373 0.7824212099861433 0.7848745721444587 1.057887571373266 0.9985415334410935 1.1538639354704363 1.303538973874766 1.0 17.656910442557077 1.9929284398518508 1.7912667691695976 1.1700710359566278 0.9265078713834629 0.3034672992497762 0.1370008905855209 0.4037470183934744 2.414963616162661 0.08581830194094313 0.04282228477970556 98.3848980331446 -1.9929284398518508 -0.24356316457316485 EDEIS(ph)PPPPNPVVK ddPTM_BT-474_Trastuzumab_2h_R1 6 EDEISPPPPNPVVK 14 0 P10644;P10644-2;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EMU2;K7EMZ6 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 1 EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK 211.51 3.920099999999999e-09 9133060000.0 7382780.0 5859520.0 4995100.0 4231920.0 4627650.0 6912700.0 6514640.0 6202040.0 7809590.0 6222080.0 True False 7343031.932783962 6054550.5810453575 5698366.661812478 4767680.638091465 5216953.797269511 6434841.319745471 6199501.9748584395 6664867.71812099 5885021.187644593 5824981.527409311 1.2606103381154945 1.039411121315289 0.978263473454628 0.8184885420936114 0.895617226032608 1.1046972920800655 1.0642955596832078 1.1441869277627088 1.0103072704956688 1.0 22.473822043922468 2.7033304169367156 24.86636190055338 1.0792984429342078 0.9896296881528114 0.06799061690310793 0.11414651524655373 1302.2838990739967 919183.7736020432 0.03925904845782286 0.03701531176941597 505.04539659157615 -2.7033304169367156 -0.08966875478139646 EDEKDDKPIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EDEKDDKPIR 10 2 P35998;C9JLS9 P35998 PSMC2 26S protease regulatory subunit 7 0 ;;; 133.07 0.00011638 1192120000.0 3600010.0 2237960.0 1956270.0 1752100.0 1557940.0 2484490.0 2516350.0 2335840.0 4173790.0 2288530.0 False True 3580627.946158712 2312449.145724614 2231695.811796337 1973915.6803531374 1756334.42436616 2312743.0541603747 2394624.5371095026 2510152.241955185 3145215.380420625 2142474.056090893 1.6712584854781578 1.0793358916764917 1.0416442642335821 0.9213253596893941 0.819769284660896 1.0794730734710274 1.117691264592803 1.1716138334646387 1.468029622799405 1.0 21.03084630370833 4.738506584216731 8.380607995066901 1.075195900936592 1.67509302368592 0.5483843777585123 0.16159766412196444 0.07068723316707544 73.70190706055428 0.04086866628834799 0.24044137472189828 54765.44037336411 -4.738506584216731 0.5998971227493282 EDENDAS(ph)DDEDDDEKRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDENDASDDEDDDEKRR 17 2 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 EDENDAS(1)DDEDDDEKRR 152.47 1.666e-07 333320000.0 316540.0 211320.0 170630.0 149820.0 178960.0 273780.0 243160.0 254920.0 373460.0 228870.0 True False 314835.7838109005 218353.65845436256 194653.22085745298 168787.19663860925 201749.49522097607 254854.23300879778 231397.42183859422 273943.42485753086 281425.7871076136 214263.32065453482 1.469387214055749 1.0190902380646978 0.9084766364248598 0.7877559076513684 0.9415960445524165 1.1894440552413041 1.079967495751106 1.2785362609927091 1.3134576008992573 1.0 17.709025373266304 2.7250541677821594 23.021589169426196 1.1889171580635058 1.0052356149429644 0.12722845292276852 0.186397503054933 492.0538666245837 838697.2630306894 0.06218493267145356 0.05900123836231013 530.9506634153463 -2.7250541677821594 -0.1836815431205414 EDENSWFNLFVIHQNR ddPTM_BT-474_Trastuzumab_2h_R1 4 EDENSWFNLFVIHQNR 16 0 F8W7U8;P49959-2;P49959;P49959-3;F5GXT0 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 ;;; 218.98 1.2836000000000001e-14 542976000.0 509918.0 598304.0 544556.0 560696.0 530822.0 570754.0 559333.0 528342.0 639188.0 609644.0 False True 507172.6581452157 618218.1869575946 621224.7514343966 631680.0561105441 598419.0352715079 531299.1193903993 532275.9259304419 567769.5629063143 481668.68208038696 570735.997977512 0.8886291734575313 1.0831946629410845 1.0884625354556206 1.106781521314577 1.048504102408285 0.930901715106699 0.9326132008785866 0.9948024391632739 0.8439430556110912 1.0 19.122464035288544 2.7442874900496586 22.80488293285035 0.9440392825199662 1.0513975030939504 0.35090889379972723 0.06927125909753855 153.08993264754238 609615.9062823736 0.02114371936892785 0.021828067807115947 554.9929802556288 -2.7442874900496586 0.10735822057398425 EDEVEEWQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDEVEEWQHR 10 0 P15311;E7EQR4 P15311 EZR Ezrin 0 78.13600000000002 0.025954 0.0 238970.0 256670.0 261890.0 215830.0 268670.0 333060.0 301640.0 289260.0 363540.0 341820.0 False True 237683.41207206275 265213.10578970856 298761.83561131265 243154.05587045162 302883.53196814726 310036.34613890783 287048.52082329977 310846.0500325178 273950.4381864238 320004.7549531746 0.7427496260386577 0.8287786405815014 0.9336168634588871 0.7598451338825626 0.9464969731854995 0.9688491853324948 0.8970132986470866 0.9713794724019117 0.8560823986084525 1.0 18.287733816725694 6.865827188576607 0.32648441666322153 0.9542993030626521 6.078414309426937e-14 0.4766935307507226 0.062061771210454496 23.896158039278895 0.6716843120644359 0.055507527329116894 11.934382406674118 7342216.536766839 -6.865827188576607 -0.9542993030625914 EDFATFDYILCMDESNLR ddPTM_BT-474_Trastuzumab_2h_R1 5 EDFATFDYILCMDESNLR 18 0 P24666;P24666-3;P24666-2 P24666;P24666-2 ACP1 Low molecular weight phosphotyrosine protein phosphatase 0 ;;;; 231.06 2.3122e-19 168449200.0 134979.0 135923.0 116058.1 126402.1 119305.3 143875.0 125836.0 117455.0 162373.0 136042.0 False True 134252.28806157658 140447.1148878115 132398.07168491094 142404.59289970066 134498.12277708494 133929.25989532025 119748.83193979829 126220.08852440513 122358.34983672839 127359.68308858397 1.0541192063755256 1.1027596134180444 1.0395603104070428 1.1181292968564653 1.05604944606792 1.0515828608192035 0.9402412838645962 0.9910521560941212 0.9607306399437493 1.0 16.958549125551166 2.3724791443876496 4.9393239728482765 0.9734808511156168 1.0742809913680575 0.765919599289586 0.026557115318723144 0.09167215360283214 3.646474588012562 0.008800743370893186 0.007291308795460875 235.7648974643087 -2.3724791443876496 0.10080014025244077 EDFEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDFEEAR 7 0 P00966;Q5T6L5;Q5T6L6 P00966 ASS1 Argininosuccinate synthase 0 ; 193.98 0.0011370999999999998 1834730000.0 1980460.0 2120600.0 1807580.0 1877350.0 1972830.0 1821600.0 1815780.0 2028960.0 2620800.0 2020370.0 False True 1969797.4234097905 2191182.8890702305 2062071.552232985 2115022.3175109667 2224058.2066204674 1695677.0795851643 1727943.7844467962 2180371.298050117 1974938.956920778 1891428.2568742188 1.0414338562674774 1.1584805720791056 1.0902192799217094 1.118214402171542 1.1758617851548618 0.8965061579377303 0.9135655968798956 1.1527644731571298 1.0441521901468096 1.0 20.851044624371397 2.762129230178807 24.99909328857205 1.0151791337863476 1.1177524376777646 0.3661528455159304 0.07485082654602787 1058.086313109549 1122304.453753186 0.02478348815407065 0.02627149840425741 578.2680932752726 -2.762129230178807 0.10257330389141694 EDFLQLFNLRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDFLQLFNLRPK 12 1 O75362 O75362 ZNF217 Zinc finger protein 217 0 ; 156.36 5.5415e-05 218522000.0 219740.0 204834.0 193111.0 188687.0 168023.0 223720.0 231140.0 195925.0 301370.0 230860.0 False True 218556.94425540918 211651.77586523246 220299.35024909786 212574.75485348585 189419.73309965423 208254.76298023303 219958.87515945343 210545.91838699134 227101.40165110503 216126.3171508101 1.0112463263920932 0.979296638444751 1.0193083061484636 0.983567191889704 0.8764306707150321 0.9635789186881651 1.0177329538538753 0.9741799201625 1.0507808796493612 1.0 17.721515230628956 1.5854991932232667 1.6838019033263147 1.0197632540110626 0.9738432354001403 0.14470435466056608 0.04117180452630328 0.7060252566401989 4.005271839493287 0.03576915680101805 0.012537066221502852 38.50340994108545 -1.5854991932232667 -0.04592001861092232 EDFLVGRPPELGQGDADVAGYLQSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDFLVGRPPELGQGDADVAGYLQSAR 26 1 Q8N0W3-2;Q8N0W3 Q8N0W3-2 FUK L-fucose kinase 0 ; 182.44 1.702e-17 204553000.0 69203.0 84683.0 79102.0 96049.0 82113.0 84867.0 76719.0 78794.0 88336.0 93672.0 False True 68830.41873717615 87501.62246304557 90238.87403309056 108208.79355187426 92569.60382811814 79000.34404542939 73007.80887495934 84674.00838782477 66566.77644175592 87693.77276336607 0.7848951706400976 0.9978088489722183 1.0290225997756104 1.2339393111055466 1.0556006533999749 0.9008660655826141 0.8325312798659547 0.9655646657637839 0.7590821371248391 1.0 16.42018677840663 2.716467321137081 9.97062288712749 0.8908578540273832 1.0313660336429145 0.22316892877762518 0.11910576012088508 0.7336538729715308 323.70876313659517 0.039349069886926435 0.037609152936219664 520.5558376547909 -2.716467321137081 0.1405081796155313 EDFPQKWPDLLTEMVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDFPQKWPDLLTEMVNR 17 1 P55060-3;P55060;P55060-4;P55060-2 P55060-3 CSE1L Exportin-2 0 ; 136.26 9.935e-06 4496600000.0 617680.0 650010.0 673000.0 612270.0 642060.0 745360.0 771030.0 693710.0 876160.0 749500.0 False True 614354.4795106997 671645.1899106567 767752.5501791346 689783.3192225428 723822.5352122262 693835.017588711 733732.3332793692 745478.1627880031 660242.1079425017 701666.2683207666 0.8755650759455458 0.9572145908026095 1.0941847782087717 0.9830646710056874 1.0315766453252544 0.9888390662546777 1.045699880992346 1.06243979003307 0.940963158343921 1.0 19.42042548285647 4.506004342874823 4.601257491138411 1.022720053611878 0.8883549149739326 0.5257973665994378 0.04190126576275204 0.13669005677611548 6.939841497449859 0.009717003684735258 0.03873662312092525 32063.013868422568 -4.506004342874823 -0.1343651386379453 EDFPWSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDFPWSGK 8 0 P46063;F5H4P4;F5H3W0;F5H2L2;F8WA66;F8WD97 P46063 RECQL ATP-dependent DNA helicase Q1 0 ; 82.45200000000001 0.047074 151315000.0 333690.0 378630.0 329330.0 301060.0 306550.0 393110.0 409220.0 316440.0 495260.0 388920.0 False True 331893.45011644415 391232.4706633315 375696.8014123246 339174.1651316228 345587.32543579757 365935.23098140344 389424.46522779076 340054.3596497617 373209.80914399656 364098.79262883554 0.911547790972156 1.0745228454029954 1.0318540160480898 0.93154432807301 0.9491581198075857 1.005043791382302 1.069557145235503 0.9339617887621372 1.025023473572594 1.0 18.47397043117288 EDFSDMVAEHAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDFSDMVAEHAAK 13 0 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 130.07 0.00014636 572120000.0 498280.0 435700.0 411040.0 372420.0 394870.0 468290.0 466360.0 436050.0 584750.0 494220.0 False True 495597.3158441127 450202.0111137883 468910.85917627317 419568.3338149166 445154.3539221438 435918.2145360875 443800.38513179246 468590.26521703455 440646.1977485596 462678.4564769703 1.0711484593810583 0.9730343066798853 1.0134702677681582 0.9068248757672609 0.9621246627987341 0.9421623341950117 0.9591982918571065 1.0127773590001992 0.9523810576870736 1.0 18.819650399237087 5.433741109488799 1.3560099439233573 0.9668800245731327 1.4754467106096265 0.48779421170849757 0.031398763019442937 6.492753890118362 2.683147762175662 0.008622286153675163 7.197597601204246 271482.0434594071 -5.433741109488799 0.5085666860364938 EDFSGYDFENR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDFSGYDFENR 11 0 G3V1P2;Q8N584-2;Q8N584 G3V1P2 TTC39C Tetratricopeptide repeat protein 39C 0 111.61 0.0038096 341040000.0 543030.0 526970.0 565170.0 563220.0 531920.0 665630.0 632430.0 630650.0 639370.0 758660.0 False True 540106.3868163051 544509.877889908 644741.0234542963 634523.594251752 599656.8590631522 619616.5648244802 601836.944782785 677712.3053758121 481805.83061906253 710241.6692784968 0.760454377965426 0.766654367721133 0.9077769600722811 0.8933911113612027 0.844299743314578 0.8724024393752079 0.8473692417880306 0.954199584015213 0.6783688587414307 1.0 19.43795047897752 -4.770720874831613 0.01767072631872561 2.0127960231366986 9.635213977784501e-07 0.19261171980615266 0.08209791488435758 6663.614679258443 9.249141603317979 679.5213034412919 406.31454908378697 1.6954271173858783e-05 4.770720874831613 -2.012795059615301 EDGFTAEHLAAEAMAADMDPWLVFDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDGFTAEHLAAEAMAADMDPWLVFDAR 27 0 Q9H3H3-1;Q9H3H3;Q9H3H3-3 Q9H3H3-1 C11orf68 UPF0696 protein C11orf68 0 ; 162.82 1.1901e-11 144067000.0 129358.0 140534.0 140664.0 131125.0 136182.0 138307.0 141967.0 132099.0 160994.0 141678.0 False True 128661.55090102502 145211.58923540302 160468.26852659413 147725.4115554509 153523.9704860473 128746.16262965799 135099.51384339394 141956.89816513043 121319.18590907504 132635.98874336158 0.9700349966853512 1.094812883073342 1.209839577078024 1.113765675176486 1.1574835151498892 0.9706729210483737 1.0185735796398296 1.0702743615068453 0.9146777360993364 1.0 17.01711275619941 2.7363166677559745 24.99200489072558 1.0070078915804435 1.1142348937738606 0.4077850380912279 0.06797967216783563 220.5725770942338 2456614.202954994 0.022125794483516998 0.021829845777301963 544.899824159161 -2.7363166677559745 0.10722700219341719 EDGKVFDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDGKVFDEK 9 1 Q9Y5Z4-2;Q9Y5Z4 Q9Y5Z4-2 HEBP2 Heme-binding protein 2 0 ; 129.7 0.00034825 475650000.0 1326470.0 1206160.0 1039340.0 1100290.0 1005360.0 1507860.0 1639180.0 1307310.0 2568600.0 1566400.0 False True 1319328.4329046723 1246306.3064608842 1185670.0378947726 1239586.6011847232 1133386.6367644218 1403625.1873206454 1559886.6011243076 1404868.1105856688 1935602.947476618 1466431.0109374907 0.8996866699247068 0.8498908555296573 0.8085413013304817 0.8453085020291915 0.7728877992288548 0.9571709660063085 1.063729960352564 0.9580185498720021 1.3199413631052341 1.0 20.483877769624943 2.255994067649536 1.3812588733451783 1.0989063587343337 0.8339828527331167 0.5996482978685083 0.09538089738172102 0.30005617869757456 1.1222859417674986 0.0552174120469684 0.03279851341768759 180.2993112271078 -2.255994067649536 -0.26492350600121706 EDGLAQQQTQLNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDGLAQQQTQLNLR 14 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 329.15 5.2759999999999995e-68 1137150000.0 413029.0 389005.0 392654.0 375505.0 372084.0 402011.0 430730.0 373195.0 440670.0 441000.0 False True 410805.29775583616 401952.7962665115 447936.27019024943 423043.89449860546 419466.69188534765 374220.9258021035 409893.94435161114 401044.70594581135 332072.78317547316 412855.00244090497 0.9950352916327756 0.9735931353382257 1.0849723693353235 1.024679105248722 1.0160145557286522 0.9064221665950832 0.9928278497976595 0.9713935972066026 0.8043327105452845 1.0 18.65527566046613 2.7862076460781346 10.092928316407553 0.9412759379193951 1.0204093521062718 0.33803552322487906 0.05832892507151061 0.8235148620405324 171.6467521745211 0.017755498904887427 0.018810906494167688 611.2342000374689 -2.7862076460781346 0.0791334141868767 EDGNEEDKENQGDETQGQQPPQR ddPTM_BT-474_Trastuzumab_2h_R1 7 EDGNEEDKENQGDETQGQQPPQR 23 1 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ;;;;;; 275.2 9.248799999999999e-52 9731386000.0 3452204.0 2308478.0 2156354.0 1935396.0 2003003.0 2951984.0 2749784.0 2785766.0 4128899.0 2801089.0 False True 3433617.7172399187 2385314.294725581 2459949.8998350343 2180416.935159377 2258073.5593210813 2747920.294302882 2616766.4427250237 2993654.00475312 3111387.165862046 2622321.101887057 1.309381110791139 0.9096194562172715 0.9380811137373 0.8314835790286399 0.8610972766440165 1.0478961910215505 0.9978817776518535 1.141604665652443 1.1865012120838485 1.0 21.322412922975538 1.9809076433143231 2.1162637843898384 1.1223829637949505 0.9629590432615809 0.13985892817801626 0.13361120956072495 0.5211557428662058 4.331564940579548 0.07650347972054376 0.0397198028350097 95.69905368811169 -1.9809076433143231 -0.15942392053336962 EDGNEEDKENQGDETQGQQPPQRR ddPTM_BT-474_Trastuzumab_2h_R1 6 EDGNEEDKENQGDETQGQQPPQRR 24 2 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ;;;;; 237.01 1.1192e-37 1388457000.0 906535.0 951184.0 831607.0 871612.0 876338.0 978713.0 1031271.0 952655.0 1623009.0 1081445.0 False True 901654.316285506 982843.5844371306 948690.0371423775 981957.989831608 987934.4498377295 911056.8739525871 981384.4818922065 1023746.9535840714 1223040.1791563798 1012426.2542283547 0.8905876477617857 0.9707804201366043 0.9370460645209607 0.9699056950869288 0.9758088015908949 0.899874800902878 0.9693392262335122 1.0111817520618773 1.2080289048692734 1.0 19.94938539432509 1.510516012940877 3.711625675028016 1.1068286227990434 0.9468600670970809 0.5616786519581047 0.05532894796377583 0.12497837744137794 3.6684860819874046 0.03361103370246476 0.013113090635805479 32.397836767251945 -1.510516012940877 -0.15996855570196244 EDGSFAGDIWGEIDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDGSFAGDIWGEIDTR 16 0 P53611 P53611 RABGGTB Geranylgeranyl transferase type-2 subunit beta 0 96.756 0.007688800000000002 15962000.0 18088.0 22678.0 27454.0 29494.0 28227.0 25005.0 24294.0 22488.0 22563.0 23659.0 False True 17990.616217765735 23432.8235208595 31319.284565554197 33227.93737591205 31821.54113546322 23276.463205438635 23118.80640790757 24166.168751750192 17002.650978710142 22149.062364511043 0.8122518200405496 1.057960067799773 1.4140230430583103 1.5001961179698715 1.436699243144946 1.0509006125123384 1.0437826228233629 1.0910696062001755 0.7676465350494076 1.0 14.434958006063285 2.561547105564093 7.296516588508921 1.0029127919213756 1.2573942637733322 0.27829112607144 0.20455334044240875 0.413672519500936 31.28562859389575 0.07257857029024897 0.06819320735463794 364.3737695693434 -2.561547105564093 0.2544814718519566 EDGSGDRGDGPFR ddPTM_BT-474_Trastuzumab_2h_R1 6 EDGSGDRGDGPFR 13 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;;; 188.48 5.5405e-06 8560610000.0 4028850.0 4768090.0 4423580.0 4583440.0 4560170.0 4828920.0 4794080.0 4414000.0 5995970.0 5021840.0 False True 4007159.119247311 4926792.993278728 5046381.613553364 5163703.034049304 5140880.619254807 4495108.126454978 4562172.035235929 4743395.093837841 4518343.5353816785 4701341.871786465 0.8523436985714524 1.0479546324519033 1.0733917573273153 1.098346636954344 1.0934921899864563 0.9561330039474198 0.9703978480302151 1.0089449402315847 0.9610752969268221 1.0 22.16464116344818 2.720062875189991 24.907315658378767 0.9815340219748271 1.0397933257506125 0.13458578381929542 0.06702613082531252 1575.2921993198718 2121136.355761917 0.022229025636561938 0.020996223795846307 524.8834449994464 -2.720062875189991 0.058259303775785365 EDGTFYEFGEDIPEAPER ddPTM_BT-474_Trastuzumab_2h_R1 2 EDGTFYEFGEDIPEAPER 18 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ; 285.52 2.7310999999999996e-39 136162000.0 129876.0 156241.0 133108.0 134991.0 139352.0 148857.0 147185.0 134678.0 171806.0 141572.0 False True 129176.76204658025 161441.3872353209 151848.44940452327 152080.8467590609 157097.6511959851 138566.86596168685 140065.0992486985 144728.35624102704 129466.71338245248 132536.75375411293 0.974648604161784 1.2180876825671536 1.1457082288754266 1.147461684788258 1.1853138600892432 1.045497660360395 1.0568019457346334 1.0919865783760814 0.9768363092900547 1.0 17.016032963214606 1.819778614828675 0.8347152149705906 0.9969623179330527 1.1363104869632723 0.34054135838060506 0.067388395338617 0.6538384881005863 0.8579116378658244 0.057351883105002936 0.026198547706209403 66.03567399350321 -1.819778614828675 0.13934816903021963 EDGVFNISVDNTCSLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDGVFNISVDNTCSLFR 17 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ; 110.44 0.0012987 148824000.0 97252.0 92315.0 87860.0 82292.0 73004.0 111339.0 94941.0 93882.0 130029.0 113469.0 False True 96728.40603771286 95387.64896940396 100229.92430718984 92710.15876241123 82300.626671391 103642.3969938145 90348.34112015938 100887.95156313649 97985.09524933307 106227.31127430151 0.9105794439994772 0.8979578587195224 0.9435419489096816 0.8727525685274466 0.7747595762719935 0.9756661987441986 0.8505189488121445 0.9497364693964846 0.9224096333975235 1.0 16.696795208322865 1.0009208959711693 0.9199756229040615 0.9978182160167851 0.8894658284396055 0.2777935753845264 0.052819589124728374 0.7835485236425137 1.4351985382696237 0.048540086757135295 0.016710348914775096 10.021226910609972 -1.0009208959711693 -0.10835238757717958 EDGVTPYMIFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDGVTPYMIFFK 12 0 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;P13693-2;H0YCX0 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 ; 183.64 3.5694e-05 152347000.0 153824.0 201884.0 172542.0 179128.0 174719.0 212830.0 195684.0 181934.0 280060.0 206579.0 False True 152995.82867545323 208603.58689854492 196834.41383805114 201805.5864335924 196968.4290093526 198117.5630479305 186218.01733452664 195510.8389221328 211042.96561173437 193394.9513588199 0.7911055981579829 1.0786402924836818 1.0177846549512544 1.0434894241844381 1.0184776160154385 1.024419518999482 0.9628897550123872 1.0109407590448787 1.0912537485023113 1.0 17.561190607696943 4.746880798854602 24.896557130940643 1.0241042665881754 0.7911054752804851 0.8015243017652788 0.03525936238962777 422.5086683061341 1264246.5010917415 0.008362404405579223 0.09444397540129322 55831.69320206479 -4.746880798854602 -0.2329987913076903 EDGWIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDGWIR 6 0 P28074;P28074-3 P28074 PSMB5 Proteasome subunit beta type-5 0 ; 130.84 0.036268 3680500000.0 1985500.0 2523700.0 2244000.0 2141150.0 2166400.0 2401700.0 2428200.0 2283000.0 2648700.0 2331000.0 False True 1974810.2886097885 2607699.8288911353 2559935.6948023434 2412219.370462943 2442278.1987411883 2235676.131993681 2310738.689375205 2453369.052839104 1995963.3757616244 2182233.5843304945 0.9049490864726366 1.194968241537339 1.173080514012769 1.1053900864618063 1.1191644268871772 1.0244898383229597 1.0588869614909422 1.1242467673742604 0.9146424058788292 1.0 21.057374104037475 1.241724776774257 24.998840792699035 0.9573211803031245 1.0939788019117735 0.29897625842810094 0.07973205005925736 86.68844043134754 684937.49312868 0.0564709861441392 0.018667939462815853 17.447161324501103 -1.241724776774257 0.13665762160864903 EDHKPFGDDEVELFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDHKPFGDDEVELFR 15 1 F6WE04;Q5SRH9-5;Q5SRH9-6;Q5SRH9-4;Q5SRH9;A0A0A0MRQ0;Q5SRH9-2;E9PHX9 F6WE04 TTC39A Tetratricopeptide repeat protein 39A 0 ;; 249.19 9.9586e-19 418420000.0 632140.0 564320.0 518310.0 475953.0 483758.0 668890.0 636900.0 589500.0 793060.0 666890.0 False True 628736.6284773565 583103.0500613569 591283.5427687187 536208.6009994391 545361.713841691 622651.2086976938 606090.7138057268 633491.4834203467 597620.9894595519 624328.5092467467 1.0070605765479592 0.933968321845292 0.9470711877022935 0.8588565043207392 0.8735172361417082 0.9973134327133698 0.9707881425068611 1.014676526921148 0.9572220082990965 1.0 19.25194582075309 2.713644105676966 24.72144543970161 0.9896041113560321 0.9222954133266509 0.3810342534055542 0.04066670861294185 724.7204306149844 719045.6525037067 0.013832743508424242 0.013046656242103613 517.1828388259711 -2.713644105676966 -0.06730869802938122 EDHLVYADEESSNITDGRIT(ph)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ddPTM_BT-474_Trastuzumab_2h_R1 7 EDHLVYADEESSNITDGRITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 51 2 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 EDHLVYADEESSNITDGRIT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNITDGRIT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEES(0.047)S(0.248)NIT(0.248)DGRIT(0.455)PEPAVS(0.002)NTEEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNIT(0.001)DGRIT(0.908)PEPAVS(0.065)NT(0.018)EEPS(0.003)T(0.003)T(0.001)STASNYPDVLTRPSLHR;EDHLVYADEESSNITDGRIT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;EDHLVY(0.011)ADEES(0.001)S(0.007)NIT(0.175)DGRIT(0.804)PEPAVS(0.001)NT(0.001)EEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNIT(0.008)DGRIT(0.788)PEPAVS(0.196)NT(0.008)EEPSTTSTASNYPDVLTRPSLHR 349.11 2.3417999999999986e-160 14257650000.0 186509.1 264194.4 272767.5 279021.0 282542.3 307482.0 289073.0 249251.8 291537.2 306953.0 True False 185504.95572870914 272987.95089511253 311170.79306238843 314345.02999133227 318522.3871455834 286226.4930747724 275089.4346239014 267852.23499099456 219691.76345833536 287362.9967443154 0.6455422508478514 0.9499760024357164 1.0828492067099937 1.0938952946367848 1.1084321598615303 0.9960450590980084 0.9572889959407873 0.9321041262293045 0.7645095782941348 1.0 18.132514774748287 -3.1715375526017913 9.966655418692673 0.9998102998924742 0.9628768305017134 0.0 0.1401496488703457 0.0 0.0 0.0 0.03154796625960655 0.0006736936399691837 3.1715375526017913 -0.03693346939076081 EDIEVYFTGPGWEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDIEVYFTGPGWEAR 15 0 Q04206;Q04206-4;Q04206-2;A0A087X0W8;E9PKH5;Q2TAM5 Q04206 RELA Transcription factor p65 0 ; 129.34 0.00015461 108729000.0 68994.0 85082.0 82709.0 91422.0 96439.0 88646.0 89122.0 72566.0 70227.0 91759.0 False True 68622.54396995409 87913.90293684481 94353.70828048447 102996.01582629114 108719.93501126363 82518.1106702384 84810.82838089815 77981.24340268166 52920.49684358809 85902.86206116785 0.79883885499753 1.0234106388008932 1.098376771350169 1.19898235466185 1.2656148165802519 0.9605979206080548 0.987287575127682 0.9077839961508438 0.6160504501690014 1.0 16.39041857858103 1.81621442305777 1.8039290156381758 0.8095201235510379 1.0733072511052941 0.3025864112100852 0.14855288511791095 0.39769414585642104 2.486915566057836 0.10460503440289341 0.04513534314007762 65.49594656441955 -1.81621442305777 0.26378712755425626 EDIIQGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDIIQGFR 8 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 142.36 0.0014394 370040000.0 295710.0 317850.0 258850.0 277120.0 278080.0 296600.0 277860.0 251967.0 303250.0 276620.0 False True 294117.93021646934 328429.44510561763 295293.830035467 312203.36358624644 313491.8396907078 276096.7401212998 264418.8502717216 270770.05700250075 228518.10084181427 258965.87477370308 1.135740106581548 1.2682344551868665 1.1402808586015785 1.2055772362249075 1.2105527029947563 1.0661510531554264 1.0210567338371652 1.0455819989375539 0.8824255359572162 1.0 17.982402473744788 2.3885572517822107 1.2764510524024937 0.9759653232926306 1.1980958350369457 0.7659434625051282 0.05347824842176816 0.21020178963852484 0.6841587050409295 0.029545768282325267 0.019669341659888533 244.65677787293885 -2.3885572517822107 0.22213051174431508 EDINAIEMEEDKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EDINAIEMEEDKR 13 1 P49756;P49756-2;P49756-3;H0YE46 P49756 RBM25 RNA-binding protein 25 0 ;;; 234.22 1.8887e-16 4417050000.0 1901940.0 1743910.0 1401350.0 1379400.0 1353640.0 1935100.0 1816570.0 1564120.0 2616410.0 1767270.0 False True 1891700.1663653997 1801954.9901341437 1598647.8992474445 1554031.89856693 1526018.0303471314 1801331.0917354256 1728695.5691287022 1680842.5768404275 1971630.8135977932 1654481.315564031 1.1433795888595444 1.0891358960556392 0.9662532203952074 0.9392864603231518 0.9223543451301504 1.0887587999876154 1.0448565075147862 1.0159332480992145 1.1916911935180377 1.0 20.657947568381502 EDIQGALHNYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDIQGALHNYR 11 0 Q8TE68;B4DKV7;Q8TE68-2;K7EN83;Q8TE68-3;K7EKX9 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 0 91.961 0.010351 115140000.0 103380.0 119990.0 121290.0 124560.0 111810.0 129220.0 123080.0 86315.0 134370.0 132390.0 False True 102823.41356659784 123983.79461451324 138366.57772842076 140329.28322857548 126048.34075020866 120287.32555116087 117126.15018874072 92756.26359868901 101256.31396575284 123940.7568552184 0.8296174412321137 1.0003472446061075 1.1163928738151399 1.1322287098222368 1.017004768636779 0.970522761061357 0.9450172256537196 0.7483919410548896 0.8169735003638519 1.0 16.919291157831026 2.089046773842071 2.647677088375055 0.8303592216456008 1.0236875503332885 0.31304389707140823 0.09915259609666047 0.27452970126246695 3.786070468380186 0.04812957067339817 0.02984881132816547 122.7571434405084 -2.089046773842071 0.19332832868768768 EDITQSAQHALR ddPTM_BT-474_Trastuzumab_2h_R1 4 EDITQSAQHALR 12 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;; 271.01 1.0529000000000003e-27 14779200000.0 5347150.0 7896800.0 7655100.0 8381800.0 8300000.0 7486200.0 7669300.0 6720650.0 7391590.0 7502990.0 False True 5318361.538524213 8159640.214283599 8732871.540678008 9442935.020594696 9356955.802045722 6968696.614619271 7298306.659428904 7222179.02976921 5570031.686731561 7024142.754567085 0.7571545346321762 1.161656375645016 1.2432650995026988 1.3443540871168822 1.3321135587630029 0.9921063477942895 1.0390316533193404 1.0281936575211776 0.7929838389332188 1.0 22.743890734985197 2.6234289106479025 8.841167679533962 0.9814562939266046 1.181228162627195 0.25853288555574705 0.16578320600335744 0.4871393370552565 34.466338002673 0.05587555153356189 0.052639443647131585 420.1737441092384 -2.6234289106479025 0.19977186870059038 EDIYSGGGGGGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDIYSGGGGGGSR 13 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ;; 218.15 4.5448e-07 646610000.0 530690.0 571690.0 499380.0 522820.0 509940.0 574740.0 587160.0 596810.0 680890.0 594870.0 False True 527832.8240052015 590718.3560560971 569688.3633112285 589008.9583940572 574877.8363488191 535009.5765924331 558756.8276309795 641346.9927397735 513093.78295855795 556904.8873061702 0.9477970763704472 1.0607167750196762 1.022954504972822 1.0576473143253942 1.0322729238911632 0.9606839314705105 1.0033254158241767 1.151627517298442 0.92133108301575 1.0 19.087071427982917 EDKAPQVDVDK ddPTM_BT-474_Trastuzumab_2h_R1 3 EDKAPQVDVDK 11 1 P41250 P41250 GARS Glycine--tRNA ligase 0 ;; 156.81 2.8168e-05 1443900000.0 2035900.0 1612350.0 1509860.0 1357410.0 1449050.0 2032270.0 1925020.0 1903150.0 2802380.0 2159180.0 False True 2024938.940609756 1666016.0950638428 1722435.1640616187 1529257.9668216167 1633577.9283077545 1891783.9583490035 1831899.4283094702 2045172.7169998854 2111770.9989681207 2021379.283833 1.0017610038874079 0.8241976695757429 0.8521088436186431 0.7565418222362464 0.808150128663689 0.9358876750541075 0.906262096856839 1.0117708899844702 1.0447178398720487 1.0 20.946908618189447 2.0141785064833284 1.4348949506584894 1.026842434995398 0.8467933747002967 0.5481555383834733 0.06383197150119517 0.3051940165875553 1.172374204182488 0.043994728029451174 0.021131888425365796 103.3185985181208 -2.0141785064833284 -0.18004906029510126 EDKEEEKEKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDKEEEKEKEEK 12 3 P07900;P07900-2;Q14568 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 76.58800000000002 0.013454 245320000.0 206750.0 97723.0 50312.0 59457.0 73009.0 121840.0 110370.0 99635.0 298050.0 110240.0 False True 205636.8809720843 100975.65098019915 57395.49228025649 66984.25010373637 82306.26339175386 113417.48758050958 105030.98144565581 107070.26963627856 224599.57116538376 103204.38881878757 1.9925206992229159 0.9784046215078918 0.5561342200382091 0.6490445888047582 0.7975073960882818 1.0989599267881405 1.0176987882761022 1.037458492431741 2.17625988328606 1.0 16.655144797838176 1.4130265041326724 15.554182503153632 1.5947478049648447 0.9822770476707461 0.2012865704046506 0.45322626565225776 3.087563736899318 747.0691179564112 0.28874357249483107 0.10746901157632933 25.883708734845904 -1.4130265041326724 -0.6124707572940986 EDKLECSEELGDLVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EDKLECSEELGDLVK 15 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ;; 203.92 4.7083e-09 5945930000.0 6339790.0 4205490.0 3742820.0 3223350.0 3076460.0 5597490.0 5139590.0 5131830.0 8068300.0 5337110.0 False True 6305657.275056891 4345467.192377606 4269776.522825367 3631425.7795024817 3468228.9453929635 5210548.691374157 4890968.396559545 5514793.213504719 6079975.574680986 4996491.070470241 1.2620171208398536 0.8697037843337196 0.8545550192334318 0.7267952105357636 0.694132921779955 1.0428415898046965 0.9788806439514431 1.1037332271236697 1.2168490824719465 1.0 22.252483845732804 2.2039431043731113 1.8537841440279823 1.1072977517387461 0.8761516669300493 0.2460053178773246 0.15744568093010242 0.4686745658998407 3.2020783922086316 0.0838455657537737 0.051696527218208395 159.93484890061748 -2.2039431043731113 -0.2311460848086968 EDKNGHDGDTHQEDDGEKS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 4 EDKNGHDGDTHQEDDGEKSD 20 2 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D 280.35 5.453899999999998e-45 2950540000.0 1509100.0 1084147.0 886904.0 902633.0 879222.0 1426380.0 1455540.0 638602.0 2413900.0 1059068.0 True False 1500975.1732767734 1120232.1775143 1011772.3740922359 1016906.2452509542 991185.7101429224 1327777.707937356 1385129.969497234 686257.7239952504 1819026.6896028183 991477.373526268 1.5138773847540625 1.129861565604977 1.020469454077189 1.0256474554071227 0.9997058295114609 1.3391911337472173 1.3970363888092667 0.6921567171568629 1.8346628356563552 1.0 19.91922032356878 2.744974292699081 23.985494709729444 1.2008381960453374 1.1247035607102218 0.019292804985626688 0.30761111074496056 2027.122356167919 7580923.392068402 0.09455314323478049 0.09793465082413079 555.8713524657877 -2.744974292699081 -0.07613463533511555 EDKPAETK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDKPAETK 8 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ; 108.67 0.0034351 524570000.0 1147650.0 817530.0 701260.0 621120.0 667040.0 762320.0 1048130.0 977160.0 1512560.0 962640.0 False True 1141471.1799159013 844740.991842679 799991.3125388104 699753.7283151314 751983.5901441659 709622.6127082579 997427.9476545727 1050080.64111794 1139809.855265603 901203.491042433 1.2666075878107705 0.9373476692434435 0.8876922032486257 0.7764658429204683 0.8344215236831112 0.787416626501778 1.106773284356495 1.1651981506455318 1.2647641366182139 1.0 19.78149337666955 2.1043549453002273 6.2086456847455285 1.1552818264365656 0.9054616000927049 0.3607320803499371 0.142783393544914 0.21726051609887195 11.297654860804789 0.05557093885483442 0.040804895140617956 127.16129594172176 -2.1043549453002273 -0.2498202263438607 EDKS(ph)PSEESAPTTSPESVSGSVPSSGSSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725;A0A494C0B4;P54725-3 P54725-2;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 EDKS(0.973)PS(0.026)EESAPTTSPESVSGSVPSSGSSGR;EDKS(0.536)PS(0.127)EES(0.337)APTTSPESVSGSVPSSGSSGR;EDKS(0.939)PS(0.06)EES(0.001)APTTSPESVSGSVPSSGSSGR;EDKS(0.976)PS(0.023)EESAPTTSPESVSGSVPSSGSSGR;EDKS(0.978)PS(0.022)EESAPTTSPESVSGSVPSSGSSGR 207.46 6.580599999999999e-26 6907390000.0 1360407.0 1005936.0 895465.0 782751.0 824622.0 1223737.0 1240991.0 1089558.0 1697910.0 1190431.0 True False 1353082.7198674262 1039417.9716588478 1021538.6884786902 881847.1963427311 929632.7237824753 1139142.9415570425 1180959.5242840059 1170866.3506234195 1279482.8313283587 1114456.6744007454 1.214118727939776 0.9326679049391967 0.9166248558096544 0.7912799273393999 0.8341577964727505 1.022150943794716 1.0596728894095588 1.050616302561072 1.1480776783147264 1.0 20.08790910082345 2.52407508770382 7.107853215325136 1.0636308627158908 0.9278151341367231 0.2291176135400963 0.10995908837628607 0.3584919913023137 45.94234686377934 0.037304239610979 0.03471078709878686 334.25282594942894 -2.52407508770382 -0.13581572857916768 EDKSPSEESAPTTS(ph)PESVSGSVPSSGSSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725;A0A494C0B4;P54725-3 P54725-2;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 EDKSPSEESAPT(0.001)T(0.027)S(0.972)PESVSGSVPSSGSSGR 133.85 2.3058e-17 0.0 78251.0 76638.0 68986.0 65860.0 71240.0 93996.0 88513.0 74727.0 105030.0 93937.0 True False 77829.70531050337 79188.84950135072 78698.62916293877 74197.86924722213 80311.99172743828 87498.27776278387 84231.28803750408 80303.50819601722 79146.76382989535 87941.86023648814 0.8850131791755173 0.9004682103426135 0.8948938418098843 0.8437150299947435 0.9132396279936306 0.9949559575779792 0.9578065304849613 0.913143160493418 0.8999896478998566 1.0 16.424262429789017 2.998586405500417 24.983699467850983 0.9462724602727551 0.8827867117744123 0.5171568293080839 0.03258862823008013 50.01819715657665 884045.1710267264 0.009816122949929304 0.011586133888110764 996.7503698923938 -2.998586405500417 -0.06348574849834288 EDKYEEEIK ddPTM_BT-474_Trastuzumab_2h_R1 5 EDKYEEEIK 9 1 P06753-2;P06753-6;P06753-5;P06753-7;A0A494C034;A0A2R8Y6A3;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;P06753;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A5F9UN72;K7EPB9;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain 0 ;;;; 138.71 0.00011753 6350680000.0 12242040.0 7128270.0 6268730.0 5144260.0 5193530.0 10158420.0 9929030.0 9249590.0 16532900.0 9231210.0 False True 12176130.216858516 7365530.1578197945 7151312.695222054 5795522.7885471415 5854895.261035962 9456192.335748529 9448724.886321994 9939841.374266325 12458588.3245099 8642066.274563508 1.408937380253255 0.8522880898864446 0.8275003301317833 0.6706177208574879 0.6774878917868146 1.0942050240439911 1.0933409425628626 1.1501695379868357 1.4416214743897178 1.0 23.04294486408166 2.5473293132059207 6.102244979013778 1.167781682065203 0.8698362867187182 0.2767689084423498 0.2187781453589495 0.2994762187783245 20.376349423163333 0.07323549879995829 0.06837204726040431 352.6381652224566 -2.5473293132059207 -0.2979453953464848 EDLAAATPAS(ph)PLVLLPLETR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDLAAATPASPLVLLPLETR 20 0 A0A1B0GTL5 A0A1B0GTL5 1 EDLAAAT(0.007)PAS(0.991)PLVLLPLET(0.002)R 63.76 0.022732 0.0 8484.4 10738.0 9698.8 9093.4 10457.0 8812.1 8481.0 10016.0 10671.0 9012.4 True False 8438.720933105456 11095.407838741921 11064.306736519155 10244.623507632688 11788.63696650508 8202.940268452143 8070.741629433776 10763.444780217449 8041.275034074187 8437.220916096163 1.0001777856742415 1.3150547969621829 1.3113686184761562 1.2142177631130224 1.3972180038589759 0.9722324862684264 0.9565639811607596 1.2757097256613747 0.953071528414456 1.0 13.042552161461295 2.7282337324369914 24.998306817871242 1.0609363033654622 1.2530417854139522 0.3925532279766969 0.13180271752616932 840.4487843842527 2034471.856203711 0.042885417051643816 0.04083223128061114 534.8521333929592 -2.7282337324369914 0.19210548204848998 EDLAAFVEELDKVESQER ddPTM_BT-474_Trastuzumab_2h_R1 4 EDLAAFVEELDKVESQER 18 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 0 ;;; 270.95 5.5188000000000004e-39 763549000.0 251424.0 285482.0 289217.0 227766.0 255058.0 352258.0 292560.0 328232.0 487597.0 328385.0 False True 250070.36111983226 294984.095792487 329936.2396807708 256601.15224662572 287538.12445279275 327907.233586139 278407.75511226844 352726.3385683244 367435.252815057 307427.18815545697 0.8134295558575612 0.9595250750669525 1.0732175044776184 0.834672931129533 0.9353047990908113 1.0666175478934083 0.9056055086822241 1.1473492005852162 1.1951943971502472 1.0 18.229885233748345 1.7146637596425405 7.178568789185348 1.1268632379483343 0.9475754649837747 0.42314061673260095 0.09177529410091552 0.11274194122735874 14.348788486433113 0.04429844225594885 0.023127676108035365 51.839852795657066 -1.7146637596425405 -0.17928777296455967 EDLAAFVEELDKVESQEREDVLAGMSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLAAFVEELDKVESQEREDVLAGMSGK 28 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 0 ; 216.51 1.9072999999999999e-34 199785000.0 59112.0 82180.0 84009.0 66813.0 69647.0 94217.0 104443.0 100939.0 172399.0 83617.0 False True 58793.74755996062 84915.31162114088 95836.73698068189 75271.51894950871 78516.1326198889 87704.0005529618 99390.69307899434 108471.58073785648 129913.57647824548 78280.4914718847 0.7510651307174923 1.0847570068161765 1.2242735728748293 0.961561655199154 1.003010215490137 1.1203813223945032 1.2696738511751884 1.385678330555899 1.659590710731618 1.0 16.25636519327892 2.215513060338479 2.0615270047132013 1.385408134952877 1.020312856103118 0.39943952730685417 0.18644204240239837 0.3026970021311315 2.589233803372951 0.08723477959341393 0.05640198810242665 164.25290539537423 -2.215513060338479 -0.365095278849759 EDLAYMNHIMVS(ph)VSPPEEHAMPIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDLAYMNHIMVSVSPPEEHAMPIGR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 EDLAYMNHIMVS(0.5)VS(0.5)PPEEHAMPIGR 126.05 0.00022666 78981000.0 41167.0 46244.0 48151.0 46384.0 40369.0 55940.0 46381.0 42679.0 44539.0 44463.0 True False 40945.36144608366 47783.20358491168 54930.242264005195 52256.20964414135 45509.75286419081 52072.99946859575 44137.37383737389 45863.92369957072 33562.96024202329 41625.333273310556 0.9836644712785307 1.1479356398462626 1.31963489405202 1.255394384497268 1.0933186424088255 1.2509929740786978 1.0603488396734113 1.1018271829424096 0.8063109073902186 1.0 15.345174202720198 1.4955259827830178 2.3207634227375054 0.9087924105770626 1.1718312820778063 0.4553518191726039 0.10665437914608107 0.2393061466939459 2.5671729855163363 0.08509284155410951 0.028593857925842316 31.29867718338768 -1.4955259827830178 0.2630388715007437 EDLAYMNHIMVSVS(ph)PPEEHAMPIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDLAYMNHIMVSVSPPEEHAMPIGR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 EDLAYMNHIMVS(0.017)VS(0.983)PPEEHAMPIGR;EDLAYMNHIMVS(0.003)VS(0.997)PPEEHAMPIGR;EDLAYMNHIMVS(0.038)VS(0.962)PPEEHAMPIGR 231.07 3.0024e-34 562544000.0 317225.0 346292.0 324232.0 356718.0 316606.0 393891.0 365674.0 270853.0 347326.0 333061.0 True False 315517.0958470106 357818.1198820651 369881.04732493503 401878.46222487907 356923.8974292152 366662.2422896789 347984.9516096644 291065.4262236655 261732.1612299555 311804.7618321321 1.0119059567694386 1.1475710562582921 1.1862584944230894 1.2888785272664962 1.144703164031132 1.175935351773366 1.1160347570221227 0.9334861485546132 0.8394104044211664 1.0 18.250283435247187 1.7688600509874821 3.1123428655028342 0.9082437051323602 1.1641201442229878 0.6750426744914424 0.07308364525410134 0.129890643303134 2.49447803034007 0.04183251644645228 0.020305892286726277 58.730006781085756 -1.7688600509874821 0.2558764390906276 EDLDVLGLTFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLDVLGLTFR 11 0 P49407-2;P49407;E9PM35 P49407-2 ARRB1 Beta-arrestin-1 0 ; 120.76 0.00099026 50490000.0 62564.0 73168.0 72318.0 68593.0 64487.0 79393.0 78947.0 58216.0 81441.0 74999.0 False True 62227.162375513835 75603.35264900992 82499.74580067568 77276.86676700121 72699.03720560507 73904.74878101937 75128.03200317288 62560.37353485812 61370.95680348947 70212.4996101256 0.8862690079550997 1.07677910726464 1.1750008368706204 1.1006140957251553 1.035414457671877 1.052586778584953 1.0700093632948853 0.891014760651479 0.8740745187006409 1.0 16.09944026934237 1.7466556872471637 7.375601919174236 0.9134327761424116 1.062809584475191 0.4025327988963243 0.07478858910901537 0.12075028471671817 20.982089040346278 0.03677915782995686 0.01960932380089851 55.80276097760605 -1.7466556872471637 0.14937680833277944 EDLHILFSNHGEIK ddPTM_BT-474_Trastuzumab_2h_R1 3 EDLHILFSNHGEIK 14 0 P05455 P05455 SSB Lupus La protein 0 ;; 206.63 6.1153e-09 957140000.0 1043917.0 1471610.0 1472329.0 1409434.0 1332720.0 1723946.0 1713062.0 1267882.0 2053290.0 1638421.0 False True 1038296.6668620829 1520591.6492429704 1679620.125486919 1587868.1998874764 1502433.9923496828 1604773.6707523756 1630194.6465276612 1362497.7930143431 1547284.1921763825 1533855.5690572113 0.6769194491371016 0.9913525627302748 1.0950314745209695 1.0352136354425234 0.979514644441496 1.0462351887138595 1.0628084412991146 0.888282978202313 1.0087548158966657 1.0 20.548731211477364 4.73560934244234 5.370384867778959 1.0094623617144936 0.6643717959701315 0.7840715881092748 0.05280331561198779 0.07104770562609324 7.550859373618673 0.01380460107065898 0.09040331788541767 54401.30808042918 -4.73560934244234 -0.34509056574436203 EDLMGLAIGTHGANIQQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLMGLAIGTHGANIQQAR 19 0 P51116;A0A087WWR6;Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;Q06787-6;Q06787-5;Q06787-8;Q06787-3;Q06787-4;A8MQB8;Q06787-10;Q06787-11;A0A087WXI3;Q8IXW7;A0A087WY29 P51116;Q06787 FXR2;FMR1 Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation protein 1 0 ; 180.31 3.3886e-14 668240000.0 1293570.0 780500.0 733360.0 775480.0 683620.0 947370.0 823670.0 870090.0 1486270.0 870650.0 False True 1286605.5628491389 806478.4706777874 836610.7135206099 873655.6884882449 770674.9548668078 881880.541769102 783825.935375041 935020.534027495 1119998.6734976536 815084.3715990328 1.5784937212390364 0.9894417053974888 1.0264099554250399 1.07185920737789 0.9455155585364708 1.0819500072600194 0.9616500606401409 1.1471457024665697 1.3740892507857068 1.0 19.636589878795725 4.7437968348542885 24.812715205088725 1.0655958325204165 1.5784939610811028 0.6293175842587131 0.11789277804275176 327.26166541262563 1550730.6512363027 0.028123720410193585 0.23907905546314176 55436.631693444564 -4.7437968348542885 0.5128981285606864 EDLMGLAIGTHGSNIQQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDLMGLAIGTHGSNIQQAR 19 0 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 188.58 3.7381e-21 0.0 41071.0 84891.0 81582.0 117850.0 109330.0 112990.0 102430.0 95994.0 88734.0 105550.0 False True 40849.87829941706 87716.54561730682 93068.03647654405 132769.79791656733 123252.52745032033 105179.2672498506 97475.06957940117 103157.55972765505 66866.69467468267 98813.7086340987 0.41340294645434 0.8876961185832625 0.9418534914135189 1.343637434034644 1.2473221494673083 1.064419792595005 0.9864529013919068 1.0439600046754784 0.6766945153560229 1.0 16.592423583368404 4.766498281148243 1.867511653881997 1.0563008853579037 0.18250824046367636 0.5568394898276572 0.1676949054252757 0.6771387947300046 2.304437934426759 0.0450711633542469 1.0568585448173888 58411.48952769018 -4.766498281148243 -0.8737926448942273 EDLPAENGETKTEES(ph)PAS(ph)DEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLPAENGETKTEESPASDEAGEK 24 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 2 EDLPAENGETKT(0.001)EES(0.999)PAS(1)DEAGEK;EDLPAENGETKTEES(1)PAS(1)DEAGEK 255.0 4.5433e-44 1473920000.0 3105600.0 1812830.0 1766710.0 1362010.0 1625410.0 2801800.0 2546500.0 2629500.0 4620800.0 2604500.0 True False 3088879.794664595 1873168.950671123 2015447.4114813933 1534440.326349968 1832396.3289401364 2608118.160727771 2423316.0664253174 2825726.642330447 3482065.755547744 2438278.580175366 1.2668280892015369 0.7682341820582295 0.8265861939928285 0.6293129664616125 0.7515122938939761 1.0696555274419013 0.9938634929282887 1.158902294965498 1.4280836422298009 1.0 21.217431536659312 2.146491980317459 1.4810365007083355 1.2098593776070798 0.8403629525556229 0.35477936489440687 0.19116650817562866 0.4212325056883156 1.7729641564124807 0.11715071253593265 0.06371969030663195 140.11737106253102 -2.146491980317459 -0.36949642505145697 EDLPAENGETKTEES(ph)PASDEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLPAENGETKTEESPASDEAGEK 24 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 EDLPAENGET(0.009)KT(0.049)EES(0.799)PAS(0.143)DEAGEK;EDLPAENGETKT(0.001)EES(0.995)PAS(0.004)DEAGEK 179.54 2.2709e-17 305150000.0 425924.0 318803.0 283466.0 243326.0 234786.0 424349.0 382721.0 385282.0 645620.0 379747.0 True False 423630.87250860507 329414.1651345168 323375.548869359 274131.04665122315 264684.6054143504 395014.75244009926 364207.32309380115 414033.6992623544 486515.6018647713 355511.2213422362 1.1916104108027377 0.926592876283371 0.9096071500878408 0.7710897158639286 0.7445182866943861 1.111117536455578 1.0244608361973293 1.1646149949899358 1.3684957679477083 1.0 18.439535572169827 2.1940303221707884 1.6768133042796192 1.184753763237347 0.9097057741311002 0.34443984387288196 0.1491366822855771 0.4015696708362611 2.218118621254549 0.08381276673173335 0.04950103491080943 156.32567844478427 -2.1940303221707884 -0.27504798910624684 EDLQELNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLQELNDR 9 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 232.83 5.394100000000001e-09 3848500000.0 1074600.0 1097570.0 939300.0 894260.0 977210.0 1024240.0 1053460.0 1018880.0 1104770.0 944470.0 False True 1068814.4729992847 1134101.9539549244 1071545.27545804 1007473.224309457 1101651.9011225437 953436.6996016182 1002500.1151919948 1094913.9993678073 832514.2366595579 884193.1159985518 1.2088020746375447 1.282640560568198 1.211890542992867 1.139426677362988 1.2459403734199035 1.0783127377381434 1.1338022170188857 1.2383199773403355 0.9415524975212785 1.0 19.754001976481096 1.4813537920035142 0.262269063230344 0.9580544980463104 1.27247389462483 0.5012790359228714 0.0751741458635348 1.648390311200648 0.46839243692799476 0.19980179592889188 0.18330045395373282 30.29380265985149 -1.4813537920035142 0.3144193965785196 EDLQLDKPASGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLQLDKPASGVK 13 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 ; 188.31 5.673e-06 1152880000.0 1286240.0 1139410.0 996480.0 963500.0 999990.0 1498220.0 1535590.0 1385440.0 2129630.0 1461830.0 False True 1279315.0267546994 1177334.5730621114 1136775.722440571 1085479.0012101182 1127332.799094903 1394651.5778305242 1461307.6451765364 1488828.567921773 1604811.2220799741 1368534.7578643726 0.9348063828141987 0.8602883969855226 0.8306516994968646 0.7931687485263663 0.8237516750061429 1.0190837827216808 1.0677899386764118 1.0878997112540434 1.172649224185081 1.0 20.384200645869768 2.591575690034772 3.109022327684074 1.0866225955563067 0.8448133626776152 0.8187307800485908 0.05248779426736046 0.10426156865970203 1.9210622622178466 0.018710484280796216 0.01720789054671222 390.45922688417403 -2.591575690034772 -0.2418092328786915 EDLRLPEGDLGK ddPTM_BT-474_Trastuzumab_2h_R1 12 EDLRLPEGDLGK 12 1 P63241;P63241-2;I3L397;I3L504 P63241 EIF5A Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A 0 ;;;;;;;;;;; 181.67 1.6286e-05 99116560400.0 53860088.0 50936037.0 46839485.0 43496366.0 44017707.0 56783284.0 58249737.0 54282988.0 76942511.0 56287563.0 False True 53570111.27062627 52631412.200060405 53434077.351897955 49003001.47581716 49623101.07306011 52857989.230552755 55431974.68570559 58333860.20798781 57981060.1408752 52695242.53913285 1.016602423470083 0.9987886887696732 1.0140209016443265 0.9299321744164336 0.9416998325078153 1.003088451320801 1.0519350896722863 1.107004302421942 1.1003091995983691 1.0 25.651169381766227 2.214412745922698 3.0233004021341925 1.080369537072898 0.9800125838888042 0.5172865723303917 0.038264057409059304 0.1809798712746777 3.412676975128617 0.016066704906248754 0.011566785164657105 163.8372862826323 -2.214412745922698 -0.10035695318409388 EDLSPAFDHS(ph)PNK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLSPAFDHSPNK 13 0 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 EDLSPAFDHS(1)PNK;EDLSPAFDHS(1)PNK 210.9 1.6854e-08 860910000.0 2102100.0 1411220.0 1268890.0 1173370.0 1207660.0 2073100.0 1912880.0 1576610.0 2791900.0 2136600.0 True False 2090782.5271652674 1458191.6045994938 1447538.6826104054 1321918.5216916623 1361448.3426383794 1929791.4765524808 1820346.6864887718 1694264.6440633617 2103873.6545433165 2000240.3587647118 1.0452656442031156 0.7290081905456748 0.7236823696050018 0.6608798367152432 0.6806423721393008 0.9647797916367721 0.9100639723182884 0.8470305264261784 1.0518104213448656 1.0 20.931741941105468 2.729300234310527 24.752651445683345 0.9335403627792781 0.7573336457538067 0.39861195026037666 0.11288939750494016 649.2207808916636 1735339.1057557296 0.03688535078275173 0.03522774754571777 536.1671898677938 -2.729300234310527 -0.17620671702547142 EDLTEIR ddPTM_BT-474_Trastuzumab_2h_R1 6 EDLTEIR 7 0 F8VWS0;P05388;P05388-2;F8VU65;F8VW21;F8VQY6;F8VRK7;G3V210;Q8NHW5;F8VWV4;F8VPE8;F8VZS0;F8VS58 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 ;;;;; 152.39 0.004227000000000001 4562560000.0 6686610.0 7885800.0 6842520.0 6931310.0 6769470.0 7165210.0 7448220.0 6641250.0 8588800.0 7474290.0 False True 6650610.034712217 8148274.085933231 7805887.339749973 7808813.135316779 7631521.878707776 6669895.897790086 7087921.143636513 7136853.798584174 6472205.324023655 6997274.413138393 0.9504572269203472 1.1644925730844098 1.1155611283578206 1.1159792619615725 1.0906420740593639 0.9532134233961718 1.0129545770461592 1.0199476792254567 0.9249609121904887 1.0 22.73836164046961 2.753967168599438 22.44002077716706 0.9890294984306026 1.0948572489435247 0.44683671595600594 0.05799075323995289 190.7349569487644 277808.91067751247 0.01714565504582321 0.018099964537454143 567.5017023076325 -2.753967168599438 0.10582775051292204 EDLYEAADKWVAAVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDLYEAADKWVAAVGK 16 1 Q9H7Z7;A6NHH0 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 ; 210.9 7.7415e-12 578930000.0 1078870.0 1011860.0 945410.0 809450.0 992370.0 1576210.0 1163040.0 1184890.0 1767590.0 1227290.0 False True 1073061.4837937248 1045539.1484177143 1078515.510348969 911926.287005222 1118742.4372621817 1467250.3126992383 1106779.3119557437 1273312.5085495065 1331991.1289925224 1148963.3014641677 0.9339388668256695 0.9099848072478416 0.9386857778438837 0.793694877672002 0.9736972763503635 1.2770210422121102 0.9632851724205053 1.108227309720751 1.1592982363275792 1.0 20.131901287550857 2.9914198531796368 24.752324136234233 1.0994854895426456 0.8965609652774956 0.5551136149701064 0.08806474007449412 258.0622737713813 744471.0494118007 0.02462685274206264 0.028089031734989237 980.4373629362289 -2.9914198531796368 -0.20292452426514995 EDLYLKPIQR ddPTM_BT-474_Trastuzumab_2h_R1 6 EDLYLKPIQR 10 1 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;; 154.24 1.3529e-05 17714640000.0 18980580.0 20101330.0 18089480.0 17322840.0 17265090.0 20595330.0 20751640.0 19585440.0 26471310.0 21495710.0 False True 18878390.666220702 20770390.617539395 20636321.547421206 19515909.767849196 19463696.873294193 19171623.313291986 19747803.894236892 21047004.985649154 19947810.347881056 20123835.38439677 0.938110966702613 1.0321288273727354 1.0254666246883433 0.9697907677669171 0.9671961880778243 0.9526823762510455 0.9813141241231065 1.0458744361409442 0.9912529081483048 1.0 24.26240195756189 1.7765535597569866 24.999999999982236 1.0170838244960876 0.9825897719978184 0.17524891645830698 0.030587180433008565 78.66400442280606 51783.41430966497 0.014619755880262722 0.008117586152447044 59.779676396560845 -1.7765535597569866 -0.0344940524982692 EDMAALEK ddPTM_BT-474_Trastuzumab_2h_R1 7 EDMAALEK 8 0 P68363;P68363-2;P68366-2;P68366;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;;;;; 133.86 0.0020967 6622290000.0 8985730.0 8660630.0 8059640.0 7439980.0 7306400.0 9247830.0 9291120.0 9182030.0 12611540.0 9382600.0 False True 8937351.828088453 8948893.83408861 9194367.256353283 8381880.705161657 8236826.731574331 8608549.279150235 8841673.03007484 9867239.704003591 9503594.952977976 8783794.435152002 1.0174818973816062 1.0187959087790004 1.0467420798872755 0.9542437231474908 0.9377299061794124 0.9800490372019123 1.0065892474317493 1.1233459271901598 1.0819464211213088 1.0 23.066412861046953 1.8839149748903397 6.5941155071076345 1.0796227315021896 0.9921146908367104 0.39601542190361316 0.041415976429915194 0.2176859757652259 11.00031175373394 0.018789313846608948 0.011511103731550962 76.54467349545018 -1.8839149748903397 -0.08750804066547913 EDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_BT-474_Trastuzumab_2h_R1 18 EDNSEGEEILEEVGGDLEEEDDHHMEFCR 29 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR 240.48 3.4931e-45 5771272000.0 1307525.9 1312194.0 1152763.4 1072702.2000000002 1114205.6 1248891.4 947732.3 930287.2999999999 1456544.9000000001 1272064.0 True False 1300486.325834184 1355869.5840519753 1315062.4667209052 1208506.1885333655 1256093.078746006 1162558.477092131 901886.8679600309 999710.062229191 1097598.926096719 1190879.7864512163 1.0920382902035743 1.138544460555858 1.104278099000865 1.0148011598506306 1.054760600554925 0.9762181626715809 0.7573282192047486 0.8394718540049243 0.921670632572855 1.0 20.18359635679663 2.5597584140764726 2.955410811055841 0.8595089577480391 1.0829248475632482 0.6574323170979549 0.06727034657207584 0.14570835249429623 2.4848897024237218 0.024065111839962294 0.021713348685082498 362.87614072612536 -2.5597584140764726 0.2234158898152091 EDPDGEHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDPDGEHAR 9 0 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 128.27 0.00042208 280250000.0 598260.0 606230.0 557440.0 543940.0 560110.0 542870.0 608890.0 518600.0 644220.0 574630.0 False True 595039.0346329345 626407.9990762258 635922.7066446609 612802.7482285751 631436.6884679317 505342.6746785232 579435.6645143189 557300.5653974416 485460.6131057324 537956.6214345056 1.1061096953249019 1.1644210222858813 1.182107778409569 1.139130412772848 1.1737687822935496 0.9393743929222126 1.0771048099923115 1.035958185459924 0.9024159082031777 1.0 19.03713031903204 2.749346603443713 24.995914128551217 1.0038951423434763 1.1545706893664436 0.724458904681421 0.04967352589793167 409.3867031764134 948729.646161737 0.015276918837369254 0.01606586466840048 561.4959181259062 -2.749346603443713 0.15067554702296726 EDPDTPMSFFDFVVDPHSFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDPDTPMSFFDFVVDPHSFPR 21 0 Q9NXX6 Q9NXX6 NSMCE4A Non-structural maintenance of chromosomes element 4 homolog A 0 204.63 5.1945000000000015e-22 16330000.0 17078.0 17905.0 15757.0 18908.0 17345.0 18935.0 17260.0 16982.0 21500.0 17753.0 False True 16986.05394554417 18500.957101198932 17975.44863770078 21301.750861319088 19553.782938130505 17626.068018195576 16425.067860397 18249.283072848724 16201.613085239913 16619.988340892018 1.0220256234326879 1.1131750950558104 1.0815560317496598 1.2816946934257472 1.1765220610907496 1.0605343190782022 0.9882719243541566 1.0980322427752836 0.9748269826024649 1.0 14.020631749591331 2.5679336343208927 5.186119823047352 1.0294671335082597 1.138372023820657 0.3864790506218262 0.07051206870868806 0.26799617645052165 11.638276591035694 0.024436783207630108 0.02278481396795439 369.7716696837452 -2.5679336343208927 0.10890489031239725 EDQDKVAVLSQNR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDQDKVAVLSQNR 13 1 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 ;; 128.96 0.0001452 2294830000.0 1470840.0 1642200.0 1523740.0 1489580.0 1465520.0 1772040.0 1996660.0 1744950.0 2787260.0 2048120.0 False True 1462921.160865687 1696859.6342691376 1738269.3474144952 1678160.6752699227 1652145.2851824155 1649543.045733473 1900073.9278180928 1875167.02967656 2100377.1203705 1917407.2281162504 0.7629684187134981 0.8849761330753985 0.9065728562639516 0.8752239225251203 0.8616559179270225 0.860298752161303 0.9909600318367493 0.9779701474886016 1.095425681916307 1.0 20.87072534534471 2.044005701892945 1.6014037510692536 1.033902773834277 0.8601825211009475 0.7347344174218939 0.04623416413188378 0.20178413413584356 0.9724936952454601 0.02864744657528855 0.014485314039706092 110.663831304039 -2.044005701892945 -0.17372025273332947 EDQEAAELLS(ph)EPEEESER ddPTM_BT-474_Trastuzumab_2h_R1 2 EDQEAAELLSEPEEESER 18 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 EDQEAAELLS(1)EPEEESER;EDQEAAELLS(1)EPEEESER 319.36 1.7917999999999993e-61 589930000.0 465920.0 447700.0 399070.0 386650.0 403980.0 448660.0 423370.0 404160.0 440930.0 412970.0 True False 463411.5384885782 462601.423859635 455255.58722137817 435599.85035588255 455424.4584229441 417645.19023203745 402889.9756695415 434320.4714828954 332268.7096592945 386613.90103859495 1.1986416868190073 1.1965462768330577 1.1775458306035687 1.1267050904938811 1.1779826260760342 1.080264287212851 1.0420990414137274 1.1233959004478165 0.8594329090772262 1.0 18.560533986271768 2.111337605523068 0.6188480858485697 0.9626168082619001 1.1928453873300324 0.6648483808439267 0.05903617901084845 0.48298203043300286 0.36699270323072797 0.05216184253785397 0.03459410745120214 129.22234130995113 -2.111337605523068 0.23022857906813232 EDQIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDQIYR 6 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 170.31 0.013437 2665500000.0 1798800.0 1865110.0 1810600.0 1833170.0 1796430.0 1741000.0 1910040.0 1784410.0 2324900.0 1896230.0 False True 1789115.4606654663 1927189.0588671945 2065516.7419826742 2065249.1340408456 2025194.712225183 1620648.7678731713 1817644.068138625 1917571.7352503808 1751959.5470639218 1775210.977955819 1.0078325803987864 1.0856112782078333 1.1635331054346827 1.163382358314959 1.140819168748733 0.9129330473943844 1.0239031251551116 1.0801937116558913 0.9869021591345319 1.0 20.75955906366701 2.771972351222442 24.996785726162585 1.013785249165881 1.1164479118483366 0.47448228437982176 0.05775670565611019 654.3548860165558 489550.3851197883 0.018938845890086396 0.020086584887480153 591.5239743937184 -2.771972351222442 0.10266266268245561 EDQLDTVLAVLEDSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDQLDTVLAVLEDSSR 16 0 Q96HW7-2;Q96HW7-3;Q96HW7 Q96HW7-2 INTS4 Integrator complex subunit 4 0 100.11 0.005037300000000001 3488700.0 3741.5 5314.7 5053.1 3843.4 3752.4 4474.4 5072.3 4444.3 6033.4 4664.2 False True 3721.3561797197303 5491.596576696009 5764.532557667437 4329.974045927321 4230.245897782695 4165.0952596046645 4826.933470932315 4775.956233698124 4546.549413417978 4366.526762777477 0.8522462776233245 1.2576578308208726 1.320164256591138 0.9916288806101566 0.9687896416537485 0.9538691701400026 1.1054400289217465 1.0937654784142936 1.0412278821179126 1.0 12.092270467259592 EDQTEYLEER ddPTM_BT-474_Trastuzumab_2h_R1 12 EDQTEYLEER 10 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 ;;;;;;;;;;; 267.45 1.7365e-17 156384240000.0 33537795.0 33701274.0 29967974.0 28392183.0 27923539.0 33270337.0 31862868.0 30140444.0 36522232.0 33629657.0 False True 33357231.238119304 34823000.53223967 34187204.25290048 31986630.456683867 31479436.175867446 30970436.913139105 30321539.346863985 32389676.981353447 27521817.29643573 31483383.49846212 1.0595186263810787 1.1060755440704357 1.0858808823572104 1.0159845258768432 0.9998746220337194 0.9837073869348233 0.9630965918369324 1.0287864067385133 0.8741696170546631 1.0 24.908087258873476 3.5198209498172646 1.791535798072197 0.9774298523116207 1.0886077040143134 0.6025618839688032 0.03954324097365886 0.24087419280577643 1.5399451507407884 0.011664414584579076 0.02075551103086727 3309.9463145069185 -3.5198209498172646 0.11117785170269268 EDRENS(ph)DDT(ph)EEEEEEVSYKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDRENSDDTEEEEEEVSYKR 20 2 Q9Y2D9;D6RF85 Q9Y2D9 ZNF652 Zinc finger protein 652 2 EDRENS(1)DDT(1)EEEEEEVSYKR 141.29 3.6428e-07 360220000.0 68244.0 70449.0 50893.0 43489.0 61727.0 99472.0 70790.0 67233.0 98291.0 84287.0 True False 67876.58188662112 72793.85237768016 58058.29203011396 48994.70294097236 69587.56756540688 92595.73477190136 67365.61725593884 72250.26786225634 74068.50008192172 78907.73149826884 0.860201916818636 0.922518630246989 0.7357744409543405 0.6209113100919301 0.8818852886036086 1.1734684677119736 0.8537264470391823 0.9156297677096628 0.938672278058668 1.0 16.26787904414485 3.002767073192414 24.999537104901236 0.9634754409102949 0.7862067711974465 0.4138351175274586 0.10691238263091593 95.65754620622003 864214.2605473895 0.03255699906414914 0.03871187726201626 1006.3917621666802 -3.002767073192414 -0.17726866971284838 EDS(ph)CHRLSPVKGEFHQEFQPEPSLLGDSTNSGEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEER 35 2 Q9Y2L9-2;Q9Y2L9;Q9Y2L9-3 Q9Y2L9-2 LRCH1 Leucine-rich repeat and calponin homology domain-containing protein 1 1 EDS(0.5)CHRLS(0.5)PVKGEFHQEFQPEPSLLGDSTNSGEER 203.8 6.2061e-28 83046000.0 35910.0 33010.0 38149.0 30403.0 39094.0 45780.0 40234.0 37039.0 59122.0 50019.0 True False 35716.66454997608 34108.7178950336 43520.0476029477 34252.01668271019 44072.38917170793 42615.33635452831 38287.72771119428 39803.03826023104 44552.17529421182 46826.74459657961 0.7627407127632133 0.7284025013672427 0.929384435708276 0.7314626924804866 0.9411798652970451 0.9100640397206062 0.8176465829741014 0.8500065209132304 0.9514258502921015 1.0 15.51504512466267 7.999999999852218 0.06617379090530512 1.1691224238485383 0.15150704193320472 0.4593613650625309 0.06858739100111114 266.34050220869943 1.3065178527839336 3.7089453900219613 25.52429192359364 99999999.96597189 -7.999999999852218 -1.0176153819153335 EDS(ph)FESLDSLGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDSFESLDSLGSR 13 0 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 EDS(1)FESLDSLGSR;EDS(1)FESLDSLGSR 136.33 7.7232e-05 349910000.0 677570.0 642430.0 626010.0 644790.0 552650.0 717510.0 725950.0 620090.0 735850.0 677560.0 True False 673922.0384051034 663812.8941928634 714146.7666235362 726420.3478881922 623026.7016868159 667910.2225368634 690833.0251016926 666364.2645532186 554509.627384827 634317.5407117 1.0624363905323624 1.0464993502277578 1.1258505729200998 1.1451998427682664 0.9822000208094265 1.0529587780080505 1.0890965183251635 1.0505215791534985 0.8741830263162373 1.0 19.274845711843113 1.3604134158385999 6.34815972908261 0.9387378957513934 1.071132359283548 0.5236710388102812 0.050728076482531095 0.1568655460957761 7.692263064309995 0.034534432612317256 0.012457546895033636 22.93049425572722 -1.3604134158385999 0.13239446353215456 EDS(ph)GTFSLGK ddPTM_BT-474_Trastuzumab_2h_R1 8 EDSGTFSLGK 10 0 O75569;G5E9Q4 O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 EDS(0.997)GT(0.003)FSLGK;EDS(0.995)GT(0.005)FSLGK;EDS(0.838)GT(0.162)FSLGK;EDS(0.872)GT(0.128)FSLGK;EDS(0.972)GT(0.028)FSLGK;EDS(0.884)GT(0.116)FSLGK;EDS(0.93)GT(0.064)FS(0.005)LGK;EDS(0.938)GT(0.062)FSLGK 241.39 2.7038e-12 11664100000.0 15784160.0 10530030.0 9235920.0 9787350.0 8828830.0 12411400.0 11462570.0 10896040.0 18464000.0 12478410.0 True False 15699179.836345023 10880515.683012454 10536257.25594425 11026427.506480385 9953129.167924745 11553429.131292982 10908081.697830295 11709157.833770022 13913794.60492417 11682027.19049572 1.343874618706382 0.9313893475495965 0.9019202818254312 0.9438796303651202 0.8520035954052928 0.9889918027833934 0.9337490420074444 1.002322425965279 1.1910428197123333 1.0 23.477787312051465 -0.22675716821376524 7.150223468573815 1.0000032165017314 0.994225971633206 0.0 0.14141152579750074 0.0 0.0 0.13132487159679096 0.030953569094326845 0.5932569460535345 0.22675716821376524 -0.0057772448685253774 EDS(ph)LPEESSAPDFANLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDSLPEESSAPDFANLK 17 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 EDS(1)LPEESSAPDFANLK;EDS(1)LPEESSAPDFANLK 274.81 1.1117000000000002e-35 574110000.0 1270880.0 771260.0 624810.0 718190.0 744570.0 1033450.0 771390.0 730190.0 1295800.0 861560.0 True False 1264037.7232880408 796930.9228634841 712777.8170541232 809112.7803623208 839386.5760878533 962010.0339796267 734074.9187040351 784680.4856296899 976467.4528304124 806574.5031813734 1.5671679656402409 0.9880437823414303 0.8837098299570744 1.0031469841545149 1.0406807713076216 1.1927106921743358 0.9101142123990059 0.9728555546135826 1.2106351601481697 1.0 19.621448275525033 4.7403012974018175 24.750484529998687 1.0153896811759202 1.5671681793514676 0.7241352975420458 0.10078163029555423 68.73141569244035 977188.8742345996 0.024096578896568792 0.15502101122129985 54992.22572107431 -4.7403012974018175 0.5517784981755474 EDSARPGAHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 EDSARPGAHAK 11 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ;;; 111.52 0.00099053 3823782000.0 5576551.0 6145894.0 5416773.0 5553726.0 5529967.0 5720591.0 6186074.0 5950632.0 8244996.0 6126082.0 False True 5546527.469029057 6350456.366518617 6179407.554965057 6256827.14216364 6234175.518767633 5325140.008992741 5886829.967522459 6394698.376537027 6213127.213086083 5735110.20195733 0.9671178536614846 1.107294566781171 1.0774697150293806 1.0909689477332543 1.0870193072558532 0.9285157253256143 1.0264545510412946 1.1150088056467662 1.0833492285755224 1.0 22.451389777673352 -1.6787421270388228 2.5879934889601004 0.9915453403599715 1.0574463390791227 0.06653876174940365 0.058831398375054224 27254966.30116264 22135524.63664584 1513682.0280062077 0.014432071255023765 0.020953562555255812 1.6787421270388228 0.06590099871915112 EDSEKDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDSEKDEK 8 1 P29374;P29374-3;P29374-2;H7C485 P29374 ARID4A AT-rich interactive domain-containing protein 4A 0 ; 56.378 0.07088799999999999 4499100000.0 1960220.0 6788300.0 7062500.0 9056100.0 8484800.0 4044500.0 4486100.0 3458100.0 1216810.0 3993400.0 False True 1949666.3933209137 7014244.461885998 8056838.611649539 10202601.331457147 9565288.9866503 3764913.234728912 4269090.204433773 3716160.981875993 916943.4799186413 3738537.793078252 0.5215050646085858 1.876199961084406 2.155077481513345 2.729035226110818 2.5585642077391957 1.0070550153858262 1.1419144170049094 0.9940145553045662 0.24526794449325193 1.0 21.834042686721673 2.63967996497772 6.6300314038739705 0.8986407167117573 2.013504168438549 0.45279150027177173 0.598741885323982 0.2435875338131859 13.963116387117111 0.2052285796535751 0.19319412178966106 436.19427877952666 -2.63967996497772 1.1148634517267917 EDSGLFS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EDSGLFSPIR 10 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 EDSGLFS(1)PIR;EDSGLFS(1)PIR;EDSGLFS(1)PIR;EDSGLFS(1)PIR 101.71 0.0029533000000000003 638810000.0 906410.0 1097490.0 964070.0 949740.0 928480.0 1030060.0 996570.0 849650.0 1157570.0 975090.0 True False 901529.9892716184 1134019.291203284 1099802.676153341 1069976.986620963 1046716.4244678806 958854.376700424 948362.1018329004 913055.1974352793 872302.3841433101 912858.9213834498 0.9875896134151132 1.2422722335721523 1.2047893167178292 1.1721164810433125 1.1466354766863296 1.0503861596129964 1.0388922971751704 1.0002150124704177 0.9555719549975196 1.0 19.800032389249495 2.497705118534086 1.4511631669708607 0.9898904256915699 1.1638236188455005 0.5571057402146595 0.06458624773590411 0.2879263694794799 1.228203273155999 0.03073231748308363 0.023566312981809973 314.5611750954027 -2.497705118534086 0.17393319315393052 EDSGSSS(ph)PPGVFLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDSGSSSPPGVFLEK 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 EDS(0.002)GS(0.038)S(0.196)S(0.764)PPGVFLEK 101.75 0.00173 133010000.0 279250.0 288690.0 285150.0 265480.0 244370.0 335850.0 297620.0 293310.0 401360.0 314930.0 True False 277746.5490275916 298298.8721332097 325296.64143176837 299089.7407797221 275489.0710055319 312633.48000586126 283222.9835811911 315198.2815980015 302450.20594846027 294830.89777486207 0.9420537369854758 1.011762587925896 1.1033329406342292 1.0144450362462083 0.9343968799901701 1.0603823492224127 0.9606285695248434 1.069081578548434 1.025842977215422 1.0 18.169528198770536 1.7187063767670578 24.999998376718857 1.0368767906081422 1.0078950623050271 0.05118434285415985 0.05139177087062899 2.8762321882550292 3607.2232404128526 0.023745792731995084 0.013168197835686322 52.324655391069335 -1.7187063767670578 -0.028981728303115073 EDSHPFDLGLYNEAVK ddPTM_BT-474_Trastuzumab_2h_R1 4 EDSHPFDLGLYNEAVK 16 0 P35244;B5MC59 P35244 RPA3 Replication protein A 14 kDa subunit 0 ;;; 231.71 1.0849999999999999e-15 2132870000.0 2900560.0 2623350.0 2450230.0 2315790.0 2324160.0 2934360.0 3070770.0 2737320.0 3746950.0 2990080.0 False True 2884943.7072425145 2710666.618901439 2795201.0862190486 2608968.776556702 2620127.999624409 2731514.5999404453 2922225.123619426 2941592.7182293157 2823564.379057657 2799250.5344637227 1.0306128986040217 0.968354416844202 0.9985533812730164 0.9320240344462505 0.9360105383087369 0.9758021178564303 1.0439312550419009 1.0508501050595898 1.0086858408329615 1.0 21.416609184013904 2.2679305935565717 8.449747462794054 1.0328193349696215 0.9707505741461467 0.4074928912337068 0.030332542399009954 0.20116017369847283 50.851185435532905 0.010939582481871934 0.009023203389679917 185.32354263322867 -2.2679305935565717 -0.06206876082347479 EDSLDEEFFHHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDSLDEEFFHHK 12 0 Q5JRA6-2;Q5JRA6;A0A0A0MRH6 Q5JRA6-2 MIA3 Melanoma inhibitory activity protein 3 0 169.58 2.5129e-05 38023000.0 70948.0 82366.0 81200.0 57891.0 75601.0 99327.0 74449.0 34191.0 93816.0 65439.0 False True 70566.02385106374 85107.50251870167 92632.25419694767 65219.99466430204 85228.33922776612 92460.75828060793 70847.61744720142 36742.50603838008 70696.30386999383 61262.626994853425 1.15186088668695 1.3892238497355234 1.512051616799416 1.0645967674514034 1.3911962873372377 1.5092522605727536 1.1564573855631952 0.5997540073080242 1.1539874689985612 1.0 15.902719611833824 1.9842534586000344 12.352373169694644 0.8745355687127918 1.3365836444127261 0.5016158296122636 0.18541742472925543 0.7246267902032646 565.7619665469547 0.07175497181780215 0.04831995128836539 96.43916880471104 -1.9842534586000344 0.46204807569993434 EDSQRPGAHLTVK ddPTM_BT-474_Trastuzumab_2h_R1 11 EDSQRPGAHLTVK 13 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8W646;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;;;;;;;;;; 109.6 0.00067572 86048385000.0 54794418.0 64295635.0 64524570.0 63094350.0 63697472.0 75674613.0 73800258.0 68768540.0 87542989.0 74400233.0 False True 54499410.94172015 66435676.34344296 73609068.5983835 71082088.24079058 71808967.49470419 70443405.12218782 70230257.57617645 73900397.65437058 65969192.376902945 69651946.43269584 0.7824535240286864 0.9538236868604852 1.0568128009101856 1.020532689771659 1.0309685683241123 1.0113630520039634 1.0083028712491104 1.0609954414666645 0.9471263296374423 1.0 26.053660333901824 4.678836445842483 2.7887859664238923 1.0210168715778811 0.7543615127733803 0.8395816002096251 0.03080445546398607 0.12073655653352926 1.3928753932516913 0.0071508287762992164 0.06852840046980598 47734.94712502049 -4.678836445842483 -0.26665535880450086 EDSSGMHHENQTYPPYS(ph)PQAQPQPIHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDSSGMHHENQTYPPYSPQAQPQPIHR 27 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 EDSSGMHHENQTYPPYS(1)PQAQPQPIHR;EDSSGMHHENQTYPPYS(1)PQAQPQPIHR;EDSSGMHHENQTYPPYS(1)PQAQPQPIHR 219.52 4.9931999999999995e-34 918400000.0 362965.0 410862.0 472496.0 435829.0 473928.0 465259.0 413045.0 281050.0 360531.0 361459.0 True False 361010.83676920284 424537.29329867644 539019.329791145 491004.9067134454 534279.9216086662 433096.7404318809 393064.43536487105 302023.37814298295 271682.96591788967 338390.37715938076 1.0668472307035135 1.254578504455287 1.5928920151806465 1.4510013873183625 1.578886273580475 1.2798730982468032 1.161570960334191 0.8925294527531169 0.8028684745663671 1.0 18.368329017416446 2.008202210813565 2.015405262928707 0.880772522353984 1.3945805435818652 0.6592938468750262 0.15233130360438907 0.20218667460024498 1.5352068323321566 0.09269319128270852 0.048587212689719425 101.90657623783153 -2.008202210813565 0.5138080212278813 EDSVKPGAHLTVK ddPTM_BT-474_Trastuzumab_2h_R1 5 EDSVKPGAHLTVK 13 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;; 141.54 2.355e-05 10012110000.0 19174010.0 20320880.0 18834920.0 18106030.0 19562970.0 24565620.0 23380880.0 23096830.0 31289470.0 24764060.0 False True 19070779.26059276 20997248.206568617 21486713.019940555 20398251.541546933 22054198.270692367 22867456.51064937 22249857.510764744 24820432.7379263 23578599.375917286 23183596.489221573 0.8225979635842554 0.9056941711494407 0.9268067199983434 0.8798570813217185 0.9512845981832766 0.9863636352228964 0.9597241532869614 1.070603206429413 1.0170380332007312 1.0 24.46660105431283 2.8965591331873433 0.7066684521965376 1.0352916421725633 0.866960187965918 0.7512195878542941 0.034037822049713076 0.3423143775166944 0.37739837543398425 0.023285239428868197 0.027894496916653123 788.0597257250145 -2.8965591331873433 -0.1683314542066453 EDTEEHHLR ddPTM_BT-474_Trastuzumab_2h_R1 13 EDTEEHHLR 9 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2;F8VYN5;P22626;P22626-2;A0A087WUI2 F8W6I7;P22626 HNRNPA1;HNRNPA1L2;HNRNPA2B1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;; 228.05 1.7749000000000004e-07 21204903000.0 9715350.0 10970169.0 9730768.0 9627337.0 9674107.0 10596312.0 10634983.0 6900699.0 11784842.0 9568024.0 False True 9663043.635076864 11335304.443557803 11100775.553048328 10846156.877086908 10906047.183525443 9863813.892475413 10120528.242709646 7415664.200419514 8880625.597892325 8957384.516722523 1.0787795943153884 1.2654703415261392 1.2392875992232233 1.210862038671918 1.2175481763861946 1.1011935318909978 1.1298530529548723 0.8278827582510526 0.99143065493204 1.0 23.094646107902445 1.9089310205873793 4.64646893661372 0.9272401608447054 1.189237473894803 0.7089443091264356 0.07027525050107486 0.11117968138327458 3.93669073770655 0.03249245258559355 0.019027468335322484 81.08322623532686 -1.9089310205873793 0.26199731305009766 EDTEEYNLR ddPTM_BT-474_Trastuzumab_2h_R1 5 EDTEEYNLR 9 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;; 268.28 1.8821e-15 12479610000.0 6084860.0 5930010.0 5257768.0 4877080.0 5426390.0 6123370.0 5436609.0 5279460.0 6371010.0 5345170.0 False True 6052099.789851507 6127386.798083257 5998016.033061294 5494517.827941724 6117408.601766609 5700075.844762521 5173619.45280679 5673440.113754676 4800959.952660205 5004036.674369736 1.2094435320288248 1.2244887871160555 1.1986355063668175 1.0980170980928643 1.2224947577022112 1.1390955374004033 1.0338891957578256 1.1337726885203638 0.9594174193906945 1.0 22.254660932316607 2.044136565100893 0.5243987915734607 0.9849762120886428 1.2135085629987294 0.6872175017674276 0.051321666727598365 0.5124060039109324 0.3008882799130402 0.048392318073986425 0.036580651668487375 110.6971819604465 -2.044136565100893 0.2285323509100866 EDTHHLVNYIPQGSIDSLFEGTWYLVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EDTHHLVNYIPQGSIDSLFEGTWYLVR 27 0 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ;; 241.48 1.9118e-45 1639242000.0 341428.0 377399.0 382870.0 401501.0 384268.0 413872.0 455691.0 294271.0 440001.0 417432.0 False True 339589.7895842173 389960.4975724868 436774.7680343019 452330.9854331747 433202.25206512137 385262.0027898939 433647.48542133137 316230.9962978606 331568.6492613321 390791.1323784843 0.8689802849858986 0.9978744788784178 1.1176680631823601 1.157475049856271 1.108526310278611 0.9858514456176671 1.109665623122022 0.8092071956013279 0.8484548951847896 1.0 18.5760382052571 1.7413797697387852 12.181635251121172 0.8732249238290694 1.0540513203383748 0.3988306877282578 0.09147367918971025 0.07338292212976977 79.1836916734382 0.04405770767103216 0.02414211087851552 55.12895620273728 -1.7413797697387852 0.18082639650930543 EDTLLLIGHLER ddPTM_BT-474_Trastuzumab_2h_R1 4 EDTLLLIGHLER 12 0 Q92621 Q92621 NUP205 Nuclear pore complex protein Nup205 0 ;;; 148.96 6.4793e-05 468440000.0 652298.0 782006.0 701331.0 669226.0 686588.0 729934.0 718397.0 678902.0 872133.0 789869.0 False True 648786.1000451212 808034.5969773899 800072.3087216689 753949.9429827128 774020.9120740932 679475.3806598141 683645.3925669544 729565.1146345036 657207.5081334674 739458.8841791264 0.8773795459437057 1.0927376954492736 1.0819699726913545 1.0195968418442534 1.0467396208692985 0.9188818948522067 0.9245211697278739 0.9866202573850934 0.888768154923223 1.0 19.496110406426535 2.7426113036392112 24.91060532356926 0.9449837119758522 1.0305319765932794 0.2854430132535518 0.06274867025726512 404.82027965747386 2489534.0174310235 0.018882484652938614 0.019365672438285835 552.855078861788 -2.7426113036392112 0.08554826461742726 EDVDDLVSQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDVDDLVSQLR 11 0 P12270 P12270 TPR Nucleoprotein TPR 0 82.417 0.044193 14723000.0 38251.0 37417.0 32552.0 33190.0 31444.0 35541.0 37703.0 33920.0 41566.0 38218.0 False True 38045.060866085616 38662.40222594587 37135.03865294383 37391.85059695263 35448.20701681033 33084.13432451489 35879.16185055319 36451.28264226998 31322.616255864297 35778.89451992404 1.0633380761638576 1.0805924203280262 1.0379034665887903 1.0450812161379215 0.9907574700797543 0.9246829665486581 1.0028024155573982 1.0187928702484508 0.8754495262122145 1.0 15.126821191890027 3.248814677180027 2.838639073492185 0.971789370583416 1.060310744434036 0.5364160950327754 0.040540375118439186 0.22354211306487998 3.695773046556639 0.012332206013758213 0.016457938549104382 1773.4325574916763 -3.248814677180027 0.08852137385062009 EDVETGLDPLSLLATECTGGKT(ph)PDSEDKLFSPVIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDVETGLDPLSLLATECTGGKTPDSEDKLFSPVIAR 36 2 Q5VZ89-7;Q5VZ89-3;Q5VZ89;Q5VZ89-5;X6RAE7 Q5VZ89-7 DENND4C DENN domain-containing protein 4C 1 EDVETGLDPLSLLATECT(0.01)GGKT(0.99)PDSEDKLFSPVIAR;EDVETGLDPLS(0.03)LLAT(0.146)ECT(0.146)GGKT(0.653)PDS(0.023)EDKLFSPVIAR 165.87 5.8697e-16 62825000.0 106622.0 69644.0 65110.0 60590.0 52002.0 103789.0 95593.0 86666.0 149833.0 90520.0 True False 106047.95899881776 71962.05843931288 74276.92205373467 68260.68778756735 58624.14645999784 96614.31072302612 90968.80138927765 93133.45700103095 112908.66480933737 84742.936101929 1.251407655633539 0.8491806131517176 0.876496914909748 0.8055029826375527 0.6917880021230866 1.1400868929867878 1.0734676608308706 1.0990114490370009 1.3323666845048958 1.0 16.370805494400777 2.7037129554611097 24.507544961408342 1.1273627421933226 0.8863504807070004 0.36158854786482864 0.15532372490631602 525.77251469168 369762.861166402 0.050067884372834805 0.047206489423142296 505.49045044660755 -2.7037129554611097 -0.24101226148632215 EDVEVAES(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDVEVAESPLR 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 EDVEVAES(1)PLR;EDVEVAES(1)PLR 289.48 2.1843000000000004e-35 1059040000.0 737360.0 774860.0 660780.0 693940.0 687380.0 752010.0 747280.0 661390.0 842180.0 757970.0 True False 733390.1356883984 800650.7466872379 753812.0803972792 781792.7328487281 774913.7685795412 700025.3187411285 711131.2115131792 710746.2802703701 634636.0236338301 709595.7056692342 1.0335323760122297 1.1283196055028657 1.0623120663989134 1.1017438896581306 1.0920496874325138 0.9865129018515133 1.0021639164832556 1.0016214509078107 0.8943628302193458 1.0 19.436637753201428 2.7248154156615834 7.571515564818575 0.9810039699910006 1.0859706411695027 0.6667994124834418 0.037626140785161806 0.09985741381762862 36.4639132224725 0.011604673016049885 0.011308083731889311 530.6588550595674 -2.7248154156615834 0.10496667117850211 EDVFVHQTAIK ddPTM_BT-474_Trastuzumab_2h_R1 6 EDVFVHQTAIK 11 0 P67809;H0Y449;A0A0D9SEI8;P16989;P16989-3;P16989-2;Q9Y2T7 P67809;P16989;P16989-2;Q9Y2T7 YBX1;YBX3;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3;Y-box-binding protein 2 0 ;;;;; 213.63 1.8622e-09 6703410000.0 8878840.0 9214990.0 9158460.0 8222250.0 8598800.0 10353590.0 9971570.0 10352730.0 11906800.0 10715410.0 False True 8831037.311971866 9521705.371570906 10447891.561238622 9263186.00695372 9693806.210919362 9637870.693029286 9489207.064003412 11125303.28269774 8972528.682945795 10031543.359875958 0.8803268844247973 0.9491765155156189 1.0415039028817807 0.9234058683337297 0.9663324837624214 0.9607565204352025 0.9459369035833731 1.1090320685046917 0.8944315307287614 1.0 23.258040246866393 EDVLSFIQMHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDVLSFIQMHR 11 0 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 ; 190.26 2.349e-06 349060000.0 586240.0 686530.0 643510.0 616990.0 584890.0 643480.0 687000.0 581980.0 751850.0 657740.0 False True 583083.7489773874 709380.7360338517 734110.6145108107 695100.8707385896 659372.2745853642 598997.7421889878 653767.185405142 625410.3028345592 566566.6417738427 615762.4700804558 0.9469296641303935 1.1520363297574205 1.1921977226297853 1.1288457879671805 1.070822446355346 0.9727740342972226 1.0617197656098147 1.0156681077897503 0.9201058351279754 1.0 19.23201441411771 2.9508992285017928 4.045160741382125 1.002748204568322 1.1138303025932679 0.36606630769730586 0.06867948279622654 0.24923124623415852 8.493690053530264 0.021515975234815327 0.02378657061195581 893.098229686447 -2.9508992285017928 0.11108209802494584 EDVQHSIITDLQNGNDQTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDVQHSIITDLQNGNDQTR 19 0 A0A087WYJ2;M0R2B7;P28340;M0QZR8;A0A2R8Y7K6;A0A2R8Y705 A0A087WYJ2 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit 0 210.17 1.8898e-16 203100000.0 44692.0 57790.0 49936.0 50277.0 50102.0 53822.0 61208.0 49260.0 66103.0 52510.0 False True 44451.383237748014 59713.5052152073 56966.55474850712 56642.06304498305 56482.192722180145 50101.41182336008 58247.135202733494 52936.03133721161 49812.80138481927 49158.76684392722 0.9042412186390977 1.2147071427725196 1.1588279854409007 1.152227093588705 1.1489749712702084 1.0191755212742752 1.1848778751440345 1.0768380644143642 1.0133045351395515 1.0 15.585161105462124 1.3386961595790354 3.3879159077366143 1.0036648208991616 1.1177493904016724 0.18770835714512368 0.08561950283469026 0.3589562561302832 6.70546555007964 0.0657729897323372 0.02079977643432072 21.812033678435625 -1.3386961595790354 0.11408456950251078 EDVRPEEIADQELAEALQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EDVRPEEIADQELAEALQK 19 1 Q5TDH0;Q5TDH0-3 Q5TDH0 DDI2 Protein DDI1 homolog 2 0 ;;; 234.04 3.6361e-24 541049000.0 861340.0 768030.0 681770.0 674230.0 709520.0 883260.0 800720.0 814850.0 1129810.0 890120.0 False True 856702.641143871 793593.4142660615 777757.2899489278 759587.448869641 799873.1663454802 822202.3151703945 761986.114552555 875658.2447244605 851383.464178368 833311.7795299273 1.0280697599488375 0.9523367288936309 0.9333328881870147 0.9115285149312611 0.9598726263016348 0.9866682979498985 0.9144069882012141 1.0508170725948707 1.0216865824921315 1.0 19.668496848329465 1.7176907328755864 10.109322512965623 1.0263053786122638 0.9539691266265734 0.4590860367707469 0.034242014618596786 0.08906858026618651 24.70102136076503 0.01621857600941841 0.008776030552985996 52.202431585080326 -1.7176907328755864 -0.07233625198569038 EDVSLHGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 EDVSLHGYK 9 0 Q12792;Q12792-3;Q12792-4;F8VS81;F8W1Q9 Q12792 TWF1 Twinfilin-1 0 ; 155.07 7.4196e-05 1071210000.0 1493020.0 1755240.0 1644060.0 1480640.0 1476760.0 1918380.0 1804800.0 1759520.0 2235700.0 1887590.0 False True 1484981.746210117 1813662.1023350123 1875529.3575743067 1668088.8721865625 1664816.6325577148 1785766.9059807768 1717494.9289944666 1890824.3170615202 1684741.6918451588 1767122.3901528982 0.8403389343517008 1.0263364396498238 1.0613466096210964 0.9439577481909632 0.9421060147473252 1.0105507778814717 0.9719162286466544 1.0700019011687802 0.9533814416212498 1.0 20.75297053312534 2.347575185492456 2.1812595271595128 1.012723353599323 0.9718265493245508 0.05605610310097031 0.062341339838231744 0.885849545368492 8.64222663683973 0.026886118519533056 0.020005869227947046 222.62564231586842 -2.347575185492456 -0.04089680427477216 EDVSLHGYKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EDVSLHGYKK 10 1 Q12792;Q12792-3;Q12792-4;F8VS81;F8W1Q9 Q12792 TWF1 Twinfilin-1 0 110.38 0.0012292 325150000.0 298920.0 326420.0 320340.0 316190.0 318550.0 419810.0 415120.0 357340.0 550600.0 468910.0 False True 297310.64793313434 337284.69237494277 365441.0875548053 356219.6215803086 359115.4543062244 390789.52282644255 395039.05968760204 384006.5253357536 414912.00766200497 438983.7623459516 0.6772702624449959 0.7683306794139177 0.8324706262524826 0.8114642320177239 0.818060905913907 0.8902140724705703 0.899894468935464 0.8747624816088941 0.9451648175884549 1.0 18.743808051062548 7.456118874087793 0.1507493866359589 1.0237892229463301 4.827236237019717e-15 0.9081466588824558 0.026345215933142933 16.885447468570632 0.19306815120243037 0.0972502103350332 3.6765679403218585 28583728.23550236 -7.456118874087793 -1.0237892229463252 EDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDVSNFDDEFTSEAPILTPPREPR 24 1 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 EDVSNFDDEFT(0.064)S(0.311)EAPILT(0.624)PPREPR;EDVSNFDDEFTSEAPILT(1)PPREPR 173.92 5.7703e-12 264680000.0 79242.0 69959.0 70521.0 66107.0 64356.0 79500.0 75542.0 63644.0 65756.0 80756.0 True False 78815.3698766138 72287.5430238915 80449.74382047955 74476.13942189659 72551.355132103 74004.35212287035 71887.74486153595 68393.43845768366 49551.314885257474 75602.08294130993 1.042502624402536 0.9561580873374678 1.064120731738739 0.9851069775380737 0.9596475693457386 0.9788665767359889 0.9508698975574862 0.9046501868311968 0.6554226147938844 1.0 16.206138362774915 1.5989526715173545 3.2379143049430836 0.8172784666348211 0.9912915548049134 0.36579020300606235 0.08544214560184028 0.18130807049958264 4.449312233160703 0.05045420607794736 0.020813297689127624 39.7148266743392 -1.5989526715173545 0.1740130881700923 EDVSNFDPDFIKEEPVLT(ph)PIDEGHLPMINQDEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EDVSNFDPDFIKEEPVLTPIDEGHLPMINQDEFR 34 1 P24723-2;P24723 P24723-2 PRKCH Protein kinase C eta type 1 EDVSNFDPDFIKEEPVLT(1)PIDEGHLPMINQDEFR 172.19 1.4612e-14 173750000.0 111240.0 80761.0 89997.0 81458.0 71974.0 116140.0 109270.0 101990.0 135280.0 119980.0 True False 110641.09619992581 83449.08106394451 102667.79533205285 91770.574447923 81139.46227667932 108111.51516415282 103984.1926480638 109601.01169472626 101942.05665912828 112322.77367995403 0.9850281699344436 0.7429399963156132 0.9140425576080278 0.8170255366859862 0.7223776587628915 0.9625075273888756 0.9257623297689417 0.9757683869792693 0.9075813685797686 1.0 16.77729094130399 2.693221363330424 24.98691813569905 0.9523846706622598 0.8343471562481822 0.38373984689834384 0.07475371940650137 437.84088119609527 241298.05150257784 0.022775918764757437 0.02147341698514609 493.4252426159298 -2.693221363330424 -0.11803751441407762 EDWNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EDWNVR 6 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 ; 129.2 0.037913 974680000.0 1803050.0 2024000.0 1912220.0 1861550.0 1928300.0 2335000.0 2196600.0 2027860.0 2274900.0 2459000.0 False True 1793342.579137686 2091367.6164661632 2181443.9546858026 2097222.0391309774 2173857.5750704547 2173586.9459987693 2090342.0661731213 2179189.210464431 1714281.3770982437 2302064.514744182 0.779014909291963 0.9084748073181464 0.9476033102956789 0.9110179257352533 0.9443078424376936 0.9441902831469126 0.9080293157663357 0.9466238658852679 0.7446713009642755 1.0 21.13449683450469 4.73414823949741 4.672825846850989 0.9194116371711556 0.7710539307106877 0.30136977389750297 0.06324989788284016 0.2084279726561556 12.47934373754218 0.014108970854421372 0.10071609836505499 54218.59253419704 -4.73414823949741 -0.14835770646046786 EEADEYIDIGALNGIFVLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEADEYIDIGALNGIFVLGR 20 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 227.42 8.7056e-25 67311000.0 48797.0 47339.0 44583.0 46837.0 50298.0 54124.0 54279.0 55034.0 60710.0 52813.0 False True 48534.28237385639 48914.64999797023 50859.89887761718 52766.55939769419 56703.152160397076 50382.535274191614 51653.31740408397 59140.91653698949 45748.83397232161 49442.4291245159 0.9816322384085857 0.9893253803283713 1.0286690961225131 1.0672323413723626 1.1468520694562916 1.0190141578058018 1.0447164170271686 1.196157178848331 0.9252950306528765 1.0 15.593462004664776 4.004470385364416 2.417088700021657 1.0738058651082987 0.9839291913616288 0.1062982440845417 0.0719136571014038 0.4798241176823373 5.557332837292775 0.019047518452215365 0.04835929099289372 10103.46602423643 -4.004470385364416 -0.08987667374666986 EEADKLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEADKLVR 8 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;Q9BUJ2-5 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ; 84.213 0.016062 1403160000.0 1077170.0 1129730.0 977190.0 849190.0 1051700.0 1247120.0 1007850.0 1032190.0 1930760.0 1210880.0 False True 1071370.6364048386 1167332.380113795 1114769.8581122577 956697.366930588 1185627.7610857207 1160909.5298047045 959096.4451391151 1109217.2591546164 1454950.0688585043 1133600.6017134758 0.9451041528960249 1.029756316598044 0.9833885553935356 0.8439457119946016 1.0458954937864395 1.0240904318945758 0.8460620466233065 0.9784903584895746 1.283476796553652 1.0 20.11248099847328 1.3782942332207564 10.064610661098035 1.1404913714794938 0.9599601954520192 0.38269048247885207 0.09152336480192019 0.3055411483499895 28.562488808608418 0.057282054979684215 0.020983366588416732 23.894295660898436 -1.3782942332207564 -0.1805311760274746 EEAEKPER ddPTM_BT-474_Trastuzumab_2h_R1 7 EEAEKPER 8 1 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;;;; 131.5 0.00091405 10402130000.0 10930470.0 10430850.0 9112170.0 7451994.0 8196916.0 10046380.0 11149680.0 10616940.0 13687070.0 9338120.0 False True 10871621.56400939 10778034.536668032 10395084.331598522 8395415.676329844 9240744.665672453 9351897.397234747 10610327.382486168 11409229.974528931 10314074.995841615 8742153.186833244 1.2435862574889889 1.2328809969723564 1.1890759758425185 0.9603372872685839 1.0570330292987944 1.0697476007764144 1.2136972615015056 1.3050823670892238 1.1798094560246186 1.0 23.059557227698082 2.2153699181438777 24.326313606832585 1.2118087698240185 1.1226050391453388 0.0019935345038339936 0.10919271745506251 384.14462751256855 402952.19243208197 0.04310307156523745 0.03185680461552562 164.19877703756927 -2.2153699181438777 -0.0892037306786797 EEAIEHNYGGHDDDLSVR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEAIEHNYGGHDDDLSVR 18 0 Q93009;A0A669KBL1;Q93009-3;H3BND8;F5H2X1 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ;;; 190.71 1.5187e-14 2896480000.0 1141000.0 1275760.0 1088750.0 1104320.0 1109730.0 1170050.0 1100320.0 654041.0 1313110.0 1068080.0 False True 1134856.982777018 1318222.9003867942 1242036.5364153548 1244126.7987715204 1251047.537614964 1089167.1975014398 1047093.317969411 702848.8605729035 989511.6352725294 999914.2199707074 1.1349543391934798 1.3183359872864011 1.2421430874857848 1.2442335291600986 1.2511548617156514 1.0892606343105582 1.0471831453702956 0.7029091561409073 0.9895965228912509 1.0 19.931444809593174 2.2669538004323573 1.9889615404734764 0.8702350404285334 1.2404448762882512 0.6923508562849678 0.09534433917357187 0.15584915826048285 1.2512936175516276 0.04377818642235065 0.029424936034784507 184.90719071382313 -2.2669538004323573 0.3702098358597178 EEALCQLQEENRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEALCQLQEENRR 13 1 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 0 83.087 0.015405 0.0 103410.0 120990.0 145760.0 139200.0 124290.0 125780.0 128760.0 125230.0 161740.0 134190.0 False True 102853.25204993115 125017.07901000045 166281.74103136803 156822.70572750256 140117.5947754534 117085.1246542719 122531.3868890336 134575.29850505493 121881.34420496292 125625.87931416115 0.8187266239364507 0.9951538623452081 1.323626484759052 1.2483312083756675 1.115356131558306 0.9320143691211044 0.9753673968928891 1.0712386591023444 0.9701929639844827 1.0 16.93877416885964 2.7646760112733317 21.969838975009495 0.9993104556425069 1.115038669523032 0.14229272180748775 0.13212610842520384 350.85066289869627 295154.52316967887 0.043810033897333824 0.04643973467633265 581.6691239504906 -2.7646760112733317 0.11572821388052523 EEALGLYQWIYHTHEDAQEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEALGLYQWIYHTHEDAQEAR 21 0 Q8TCU6;Q8TCU6-3;Q8TCU6-2;H0YDZ4 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 0 182.27 2.7369e-17 44220000.0 50721.0 52363.0 51736.0 59474.0 51870.0 58308.0 59126.0 9619.2 85523.0 46898.0 False True 50447.92377163284 54105.870800898076 59019.979102626654 67003.40230199351 58475.33704242314 54277.30520226818 56265.84949674582 10337.033549307878 64447.00259948718 43904.92948860215 1.149026415922824 1.2323415942381621 1.3442677118510897 1.5261020364327835 1.3318626797385817 1.2362462674347017 1.281538318182531 0.23544129713250997 1.4678762350869465 1.0 15.42209530904823 1.9501920454753046 24.99520938421696 0.8017382541746735 1.3088294544535397 0.2554091591362221 0.29822630172496994 366.0745300995482 183707.12802730885 0.11746558327732641 0.07581193355102143 89.16451373844032 -1.9501920454753046 0.5070912002788662 EEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 EEAPAS(0.999)PLRPLY(0.002)PQIS(0.999)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK 165.48 1.2379e-11 1983823000.0 3004574.0 2135341.0 1937363.0 1670716.0 1731612.0 2872907.0 2711184.0 2550600.0 3909610.0 2970997.0 True False 2988397.7074235547 2206414.534344108 2210126.8705389267 1882228.4742976306 1952122.5241315684 2674309.7011856437 2580033.672191344 2740938.723684367 2946139.0015899893 2781385.427861501 1.0744277572926013 0.7932789581199949 0.7946136656932898 0.6767233535644152 0.7018525748272434 0.9615027368723278 0.9276073881551294 0.9854580728826813 1.0592343556840884 1.0 21.40737224796607 2.617563229826049 6.328567219318923 0.9834019353329727 0.7997105148400501 0.42107978525056644 0.1046504719988412 0.24692537187033323 11.832776379682706 0.03539405353421209 0.03328026847036017 414.53693292856707 -2.617563229826049 -0.18369142049292264 EEAPAS(ph)PLRPLYPQISPLK ddPTM_BT-474_Trastuzumab_2h_R1 5 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK 198.56 4.452600000000002e-16 4257010000.0 3804024.0 3363040.0 3284015.0 2919438.0 2987636.0 3687760.0 3419136.0 3506227.0 4508960.0 3884195.0 True False 3783543.5574508 3474976.75339939 3746375.766829909 3289038.551463278 3368093.735494055 3432833.831253283 3253739.3293120703 3767879.4629999516 3397787.2249685293 3636302.349673359 1.0404920145847243 0.9556347132992226 1.0302706998955786 0.904500845964782 0.9262413879848586 0.9440452143814848 0.8947933962653976 1.0361843160094792 0.9344072352162204 1.0 21.7940407304182 6.302983331145644 0.9577468599729577 0.9553445292038406 2.49527482210925 0.22291530501351386 0.046460695383407795 55.47595988211456 3.3472007575772897 0.01416524816321424 164.63017904145045 2009015.7021820429 -6.302983331145644 1.5399302929054093 EEAPASPLRPLYPQIS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 EEAPASPLRPLYPQIS(0.999)PLK;EEAPASPLRPLYPQIS(1)PLK;EEAPASPLRPLYPQIS(1)PLK 129.22 1.2069e-05 590296000.0 1471240.0 946350.0 982120.0 741930.0 788700.0 1311680.0 1596760.0 1011190.0 2139280.0 2911040.0 True False 1463319.007310131 977848.6876693437 1120393.9592599287 835858.2619282026 889136.2700088504 1221006.6489625988 1519518.618584444 1086650.132518779 1612083.1088833504 2725254.934933267 0.5369475671992364 0.35880998696119715 0.41111528499529665 0.30670828303579245 0.32625801667638205 0.4480339190698493 0.5575693485063452 0.3987333876877789 0.591534791192966 1.0 21.377959762942456 0.3065803623660033 0.6495761074237921 1.019478048285678 0.39258193016877974 0.8373633131144878 0.07767590867595206 0.9016235628095295 0.543849534929179 0.11445433907205153 0.030113199544200775 2.0257244145946447 -0.3065803623660033 -0.6268961181168983 EEAQAEIEQYR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEAQAEIEQYR 11 0 O75348 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 0 ; 232.26 1.0816e-12 1240160000.0 727590.0 860350.0 755660.0 797980.0 749160.0 957780.0 831600.0 764520.0 960810.0 906660.0 False True 723672.7362828491 888986.229657443 862050.3596855346 899004.1861812671 844561.0853807918 891570.9229716054 791372.3309794993 821572.3645538987 724031.2496943887 848796.1825693205 0.8525871712715287 1.0473494672966912 1.0156152647577814 1.0591520139263186 0.99501046626328 1.0503945956410938 0.9323467131814869 0.9679265546022899 0.8530095499519493 1.0 19.695058642234383 2.218690665122517 24.991721376751833 0.9389884156311802 1.0080660994584008 0.1912741403563929 0.06507081054135049 375.4645741200554 472243.0782148303 0.02332492946482071 0.017249262030369902 165.4591028310099 -2.218690665122517 0.06907768382722057 EEAS(ph)DDDMEGDEAVVR ddPTM_BT-474_Trastuzumab_2h_R1 10 EEASDDDMEGDEAVVR 16 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 1 EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR 458.84 1.351299999999999e-205 40874950000.0 9978410.0 9897810.0 8399590.0 8131830.0 9097710.0 9678500.0 9156810.0 9336100.0 10782270.0 9884500.0 True False 9924687.349265566 10227252.622497512 9582179.26145492 9161318.844224682 10256249.442148129 9009448.07573837 8713860.117888873 10032807.189755205 8125124.033515796 9253662.747453786 1.07251448643905 1.105211298662426 1.0355012412886482 0.9900208268067135 1.108344849175556 0.9736088640379061 0.9416660576144896 1.084198491296412 0.878044105913789 1.0 23.141593089727046 3.843461335447518 0.42560574994953787 0.9781913308634682 1.1224340745472015 0.29201238884830627 0.06062429372211538 3.639432615361542 0.8930159116122786 0.05113740805649163 0.24962857354289839 6973.669086424139 -3.843461335447518 0.14424274368373324 EEAS(ph)PVPLTSNVGSTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEASPVPLTSNVGSTVK 17 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 EEAS(1)PVPLTSNVGSTVK;EEAS(1)PVPLTSNVGSTVK 305.63 7.279300000000001e-47 214700000.0 872170.0 794290.0 657350.0 598000.0 648190.0 811010.0 689090.0 696180.0 948440.0 710250.0 True False 867474.3336271968 820727.4624915563 749899.1662113738 673706.7386856785 730733.1543768704 754946.787612189 655756.084120566 748132.4867304104 714709.6704448818 664921.236924383 1.304627203125186 1.2343228294043678 1.1278014967307395 1.013212845782958 1.0989770123103644 1.1353928039721253 0.9862161827674347 1.1251445211630238 1.0748786935288712 1.0 19.342823931098152 4.264296457624472 2.3103712243372057 1.0699624388908273 1.2969473908885814 0.7402323704104714 0.049064465810708974 0.14975253714030867 1.5323297055722611 0.012229082543397154 0.046165476132582386 18377.92427126558 -4.264296457624472 0.22698495199775404 EEASDYLELDTIK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEASDYLELDTIK 13 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 ;; 303.31 9.5157e-41 293741000.0 494350.0 504940.0 431480.0 385369.0 416707.0 553060.0 551890.0 514300.0 788730.0 548290.0 False True 491688.47452744795 521746.62265732477 492228.6335086084 434156.6758872263 469772.1664341049 514828.2639632031 525192.9722754632 552679.6775624832 594358.0599405247 513297.6627853144 0.957901253357344 1.016460156522365 0.9589535842373043 0.8458185325281938 0.9152041797443097 1.0029818978126321 1.0231742911619763 1.0767235419765397 1.1579208382039987 1.0 18.96943616593072 2.195255366199044 1.7935125571848722 1.0840421216488685 0.9409904695502891 0.5418516084993465 0.05493075021852126 0.2779916731523252 1.7679887410635309 0.03068111580663114 0.01854589304786007 156.7672594405246 -2.195255366199044 -0.1430516520985794 EEASGSSVTAEEAKK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEASGSSVTAEEAKK 15 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;; 185.27 1.1887e-08 518880000.0 557250.0 568770.0 396820.0 484910.0 622970.0 946950.0 922080.0 866340.0 1437330.0 999160.0 False True 554249.8279162949 587701.165621275 452688.80677872896 546299.5562810581 702301.5368675219 881489.5753805292 877475.4677123337 930990.6899853818 1083119.2807352496 935392.753376088 0.5925316674903198 0.6282934772587246 0.48395586254527995 0.5840322734052769 0.7508092556123872 0.9423737485660355 0.938082387901002 0.9952938876479234 1.157929946352456 1.0 19.83521272646833 2.833100937990384 1.4167520497538184 1.0267716440393826 0.5610629635713329 0.9204201160992133 0.060931124531561284 0.10831640598117069 0.4431483258610681 0.02604028244522078 0.026978053668533255 680.92760034735 -2.833100937990384 -0.4657086804680497 EEASLLSHS(ph)PGTSNQSQPCS(ph)PKPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 2 EEASLLSHS(1)PGTSNQS(0.003)QPCS(0.997)PKPIR 205.89 5.331899999999999e-25 390170000.0 210820.0 231600.0 221670.0 240930.0 204550.0 293140.0 276980.0 288870.0 368540.0 267110.0 True False 209684.9685443039 239308.6659948435 252879.20920982014 271431.71329689026 230598.23003716295 272875.9217773357 263581.41923364793 310426.9462521379 277718.25518299144 250062.81111562354 0.8385291983594881 0.9569942244798345 1.0112627626700332 1.0854541388458847 0.9221612322455234 1.0912295217346968 1.0540608499829016 1.2413958911651333 1.1105939901418633 1.0 17.93193099293771 6.341007116108578 0.3752256176543622 1.1244409980735144 2.324954777279461e-10 0.4807360080664018 0.0767512485702199 15.660594845759304 0.6762253317758643 0.06324135389392019 10.158039700748143 2192840.8657306465 -6.341007116108578 -1.1244409978410188 EEASLLSHS(ph)PGTSNQSQPCSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEASLLSHSPGTSNQSQPCSPK 22 0 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 EEAS(0.023)LLS(0.167)HS(0.76)PGT(0.039)S(0.01)NQS(0.001)QPCSPK 68.074 0.005122 0.0 77533.0 65303.0 62575.0 65727.0 63161.0 92853.0 80220.0 72060.0 87310.0 82484.0 True False 77115.57094272615 67476.57087850283 71385.01608834974 74048.03146085887 71204.17896542298 86434.29066245123 76339.45212984053 77437.48311326571 65793.62039406036 77219.8005018947 0.9986502223718384 0.873824724227916 0.9244392710726856 0.9589254437278945 0.9220974219387666 1.1193280751914199 0.9885994477280141 1.0028189999191421 0.852030437354549 1.0 16.23668320661737 EEASLLSHS(ph)PGTSNQSQPCSPKPIR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 EEASLLSHS(1)PGTSNQSQPCSPKPIR;EEASLLSHS(1)PGTSNQSQPCSPKPIR;EEASLLSHS(1)PGTSNQSQPCSPKPIR 270.88 3.8687999999999983e-53 8019580000.0 1708460.0 1885550.0 1968290.0 1847590.0 1905670.0 2408190.0 2338440.0 2256370.0 2644870.0 2406990.0 True False 1699261.841187751 1948309.3919109548 2245408.123316624 2081494.7045623292 2148345.778708973 2241717.4935694993 2225320.723491704 2424751.787014702 1993077.2279422563 2253373.837472182 0.7540967295040446 0.8646188038184353 0.9964649832961168 0.9237236493778301 0.9533907525610449 0.9948271592982731 0.9875506169841984 1.0760539359659782 0.8844858295586123 1.0 21.10365524762308 5.665787889440724 0.736518355080992 0.9936482575463478 9.074070230006463e-17 0.6572073240187493 0.050436893464003686 5.417278615267229 0.8110933022514641 0.018257025689517616 6.114541334550981 463220.6263158791 -5.665787889440724 -0.9936482575463477 EEASLLSHSPGTSNQS(ph)QPCSPKPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 EEASLLSHSPGT(0.014)S(0.11)NQS(0.536)QPCS(0.34)PKPIR 201.98 3.5713e-25 885730000.0 516780.0 530200.0 567620.0 510690.0 540460.0 744040.0 744470.0 675910.0 923060.0 698660.0 True False 513997.7138996552 547847.3864873315 647535.9621585144 575343.3016377746 609284.3774426068 692606.2660817665 708457.1419484222 726349.8364014353 695584.2313703044 654070.9206470809 0.7858440081561042 0.8375963052222822 0.9900087921932054 0.879634430267256 0.9315264724501647 1.0589161575881743 1.0831503428520202 1.1105062363617204 1.063469127601872 1.0 19.31908754948517 2.835107668216844 2.047922582042097 1.0796386539106577 0.8764811655019226 0.7279910806655777 0.05505027027700983 0.16981128280043908 1.4062074368496391 0.020091234230943306 0.021182405063440973 684.0812204145257 -2.835107668216844 -0.20315748840873515 EEASLLSHSPGTSNQSQPCS(ph)PKPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 EEASLLSHSPGTSNQS(0.063)QPCS(0.937)PKPIR;EEASLLSHSPGT(0.013)S(0.07)NQS(0.039)QPCS(0.878)PKPIR 199.46 4.3104e-25 1689680000.0 465430.0 486210.0 471420.0 444960.0 509370.0 639540.0 623820.0 594080.0 750410.0 648270.0 True False 462924.1765941348 502393.20592984883 537791.8383439045 501291.8903772231 574235.2502274743 595330.1051152265 593643.4433761792 638413.2662771144 565481.5104788322 606896.8535881297 0.7627724115839594 0.8278065753011759 0.8861338383356929 0.825991908531832 0.9461826121398526 0.9809411625640869 0.9781620053991169 1.051930426896517 0.9317588435918898 1.0 19.21109181552777 3.3095018040148485 0.8312044512271078 1.0070742903423493 0.7926876745572848 0.7907682664033987 0.03959346374597436 0.2801668253900898 0.4157496868782334 0.01940603423242741 0.03701966885201985 2039.397131038067 -3.3095018040148485 -0.21438661578506446 EEASNFR ddPTM_BT-474_Trastuzumab_2h_R1 5 EEASNFR 7 0 P25788-2;P25788;G3V4X5 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ;;;; 176.65 0.0017308 3626880000.0 1285180.0 1502840.0 1309070.0 1377000.0 1336940.0 1364510.0 1428800.0 1296190.0 1605270.0 1383240.0 False True 1278260.7336769216 1552861.120914035 1493375.677359583 1551328.0588130103 1507191.3843357863 1270184.6354110413 1359683.4854539542 1392918.2797194538 1209672.718015956 1294960.4389486553 0.9871040807352449 1.199157189832581 1.153221081079524 1.1979733219282693 1.1638899065977921 0.9808675208968324 1.0499807133551091 1.075645431184236 0.9341387440361173 1.0 20.304476593564658 2.7453408727456394 24.857180964239294 1.0214434369231564 1.1474660231610654 0.4873103866561841 0.06687477324898213 445.0747910777631 1631692.849899802 0.02034950815213885 0.02114639306856309 556.3407514077531 -2.7453408727456394 0.12602258623790896 EEATS(ph)PGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEATSPGAK 9 0 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 EEAT(0.001)S(0.999)PGAK;EEAT(0.148)S(0.852)PGAK 157.77 7.1075e-05 641750000.0 2431800.0 2071420.0 1754240.0 1599610.0 1741810.0 1612420.0 2213020.0 2150450.0 3154500.0 2462500.0 True False 2418707.4589983784 2140365.962500168 2001221.7438725794 1802120.4619882924 1963619.178983284 1500957.2006284082 2105967.768042627 2310927.4987638383 2377115.7431343864 2305341.1417476847 1.0491755060445198 0.9284378453756963 0.8680805229352947 0.7817153085734203 0.8517694598096053 0.6510781304542759 0.9135167589322973 1.0024232235806623 1.0311340478365336 1.0 21.136548824139712 1.8306148976213623 3.8385030903498065 1.0119403578414252 0.8512010382804334 0.34011877743778374 0.09598979217473891 0.27089588275337617 6.686357858854847 0.0512820487095475 0.02760923563480766 67.70408882147514 -1.8306148976213623 -0.16073931956099186 EEATYGVWAERDS(ph)DDERPSFGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEATYGVWAERDSDDERPSFGGK 23 2 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(0.999)DDERPS(0.001)FGGK;EEAT(0.003)YGVWAERDS(0.997)DDERPSFGGK 225.84 5.7006999999999984e-33 13671150000.0 2161530.0 2161090.0 1886277.0 1933633.0 1913950.0 2529280.0 2483500.0 2330710.0 3046690.0 2612110.0 True False 2149892.5626485613 2233020.5742435064 2151848.405786403 2178430.7395401425 2157680.1876295684 2354436.826884698 2363363.6171086896 2504639.4153055754 2295874.073054398 2445402.903460119 0.8791567882767188 0.9131503733327124 0.8799565923233543 0.8908269211825075 0.8823413861889844 0.9628011905740733 0.9664516279769898 1.024223620476462 0.9388530903459118 1.0 21.22164075185817 2.5896013525651207 2.5946398473879526 0.9878297906969294 0.8894659808258034 0.7915443782096511 0.022963975711813033 0.11832469401298898 1.5614512871065354 0.00808337403438408 0.007355530231103552 388.68819666449275 -2.5896013525651207 -0.09836380987112603 EEAYHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEAYHSR 7 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 81.215 0.027806 496480000.0 451400.0 567420.0 586290.0 559840.0 630560.0 575690.0 583060.0 511590.0 686220.0 602530.0 False True 448969.71255525487 586306.2316873665 668834.5358759654 630715.6865983115 710858.0783780661 535893.9053284931 554855.1602945004 549767.4436013825 517110.2758768992 564076.0195481142 0.795938307951698 1.0394099578228146 1.1857170180923027 1.118139514428539 1.2602168036633434 0.950038446516131 0.9836531621021566 0.9746336035377035 0.9167386273416842 1.0 19.10553007967528 EEDACHLIIPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDACHLIIPLR 12 0 Q66K14-2;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 0 ; 154.66 6.198e-05 264720000.0 442960.0 510090.0 426630.0 469580.0 437560.0 506910.0 491570.0 461260.0 566800.0 513880.0 False True 440575.1525774822 527068.0372940842 486695.795665563 529028.7798528781 493280.6723786897 471868.5048377884 467790.8811202403 495681.56343082065 427119.73473088286 481083.73844519746 0.9157972248269419 1.09558481231875 1.011665447762801 1.0996604906302445 1.02535303723404 0.9808448449386555 0.9723689323444646 1.0303436258993113 0.8878282523356131 1.0 18.875928508816475 2.7853766613025086 4.715635988955183 0.9803186167948764 1.0368749661792827 0.17560185865704958 0.058515040929001304 0.36417007218088815 18.542440217296587 0.017472807904906233 0.01823352636616953 610.0657746739068 -2.7853766613025086 0.056556349384406235 EEDAFHFVSYVPVNGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEDAFHFVSYVPVNGR 16 0 Q5LJB0;Q5LJA5;Q5LJA9;Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5;H0Y4E0;H0Y6Y4 Q5LJB0 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 0 112.5 0.00073409 223360000.0 336520.0 370620.0 351750.0 316960.0 329550.0 386250.0 362060.0 325750.0 377690.0 348630.0 False True 334708.2137108868 382955.86265547865 401273.3425341909 357087.10350135877 371516.23910411674 359549.44663470023 344545.77459648513 350059.11912498384 284613.3602867102 326380.1349228408 1.0255165002306736 1.1733430490370158 1.2294661947763932 1.094083448386886 1.138293049581423 1.10162785097108 1.0556579207185475 1.072550322977656 0.8720302795205209 1.0 18.316193725004624 1.6269616813934404 1.388499291364819 0.9454488176243837 1.13256250023622 0.5384405680090665 0.0638203167670505 0.2956895344858059 1.1005485044985615 0.052878280798024806 0.019084192450369564 42.36055888949066 -1.6269616813934404 0.18711368261183636 EEDCHS(ph)PTSKPPKPDQPLK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEDCHSPTSKPPKPDQPLK 19 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 EEDCHS(0.966)PT(0.017)S(0.017)KPPKPDQPLK;EEDCHS(0.997)PT(0.003)SKPPKPDQPLK;EEDCHS(0.994)PT(0.005)S(0.001)KPPKPDQPLK;EEDCHS(0.966)PT(0.028)S(0.006)KPPKPDQPLK;EEDCHS(0.98)PT(0.016)S(0.003)KPPKPDQPLK;EEDCHS(0.985)PT(0.015)SKPPKPDQPLK 190.19 5.8746000000000004e-15 5411700000.0 3953400.0 2503330.0 2279230.0 1867330.0 2119890.0 3438400.0 2800040.0 2972710.0 4756130.0 3016620.0 True False 3932115.3336640312 2586651.8257550574 2600125.7725776974 2103733.7865383425 2389845.4259275575 3200711.501122982 2664591.368008461 3194548.715315517 3584045.490376838 2824096.7289416846 1.392344424101072 0.9159218235150152 0.9206928877227519 0.7449227092609911 0.8462335590123854 1.1333576036265698 0.9435198662642843 1.1311753887809137 1.2690944519169993 1.0 21.429358072938424 1.6649527721905066 4.966423673117251 1.154684569371369 0.9713328882960364 0.12201748681491009 0.1772301515665898 0.2791941336738118 15.501342658463077 0.09645179931118014 0.04638384820609282 46.23307420234267 -1.6649527721905066 -0.18335168107533262 EEDEENDNDNES(ph)DHDEADS ddPTM_BT-474_Trastuzumab_2h_R1 6 EEDEENDNDNESDHDEADS 19 0 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(0.999)DHDEADS(0.001);EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS 290.92 1.6175e-49 475113000.0 793197.0 744027.0 647788.0 632912.0 691007.0 805991.0 812594.0 713722.0 940593.0 829012.0 True False 788926.5154844719 768791.4889211803 738990.9197257666 713038.5943060698 779002.6455306279 750274.7392687345 773285.7238094703 766983.5598468807 708796.4584504688 776103.7444071185 1.0165219806884824 0.9905782499586775 0.9521805880350401 0.9187413402454004 1.0037351979608395 0.9667196488555594 0.996369015588501 0.9882487558835257 0.9132754010766085 1.0 19.565889989655496 EEDEEPES(ph)PPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EEDEEPESPPEK 12 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 EEDEEPES(1)PPEK;EEDEEPES(1)PPEK;EEDEEPES(1)PPEK;EEDEEPES(1)PPEK 302.35 1.3616999999999996e-36 5421610000.0 3731820.0 2673640.0 2239500.0 1931320.0 2025470.0 2961750.0 2594470.0 2734490.0 3810220.0 2618970.0 True False 3711728.2957641818 2762630.491150489 2554802.1339170467 2175824.913977301 2283401.5985987443 2757011.193709571 2468965.57426212 2938551.529258869 2871242.335332221 2451825.0923869777 1.5138634102772084 1.126764914727635 1.0420001581066354 0.8874307228249401 0.931306888769841 1.12447303124118 1.0069909072748966 1.198515970157577 1.1710632802672392 1.0 21.225424633448167 4.738460308924104 2.9943396214192393 1.0518659871777558 1.5897369453916679 0.6909363290584226 0.09352451154122446 0.241480259929654 3.1829348691080566 0.025618801007361067 0.3108185771359951 54759.605273283756 -4.738460308924104 0.5378709582139121 EEDEEPES(ph)PPEKK ddPTM_BT-474_Trastuzumab_2h_R1 14 EEDEEPESPPEKK 13 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK 289.65 1.7701e-40 82028613000.0 21641195.0 12408294.0 11053575.0 9249240.0 9828088.0 16358767.0 14572388.0 15566346.0 24753265.0 14708208.0 True False 21524681.210682806 12821296.564817892 12609822.280603759 10420192.835654063 11079636.75115854 15227923.941685408 13867465.920511866 16727985.782823363 18653154.5175075 13769517.5731096 1.5632124434568582 0.9311362214938101 0.9157780738251423 0.7567580185963514 0.8046495959158284 1.1059155748073497 1.0071134189620083 1.2148563443857565 1.3546701559054706 1.0 23.714974678508334 1.7595225538109114 4.127521658829812 1.2152215668482746 0.9891240346665032 0.10738067866800416 0.22493268838914152 0.3759335419684911 13.37132935497537 0.11876776102335257 0.06073216695962992 57.48076690218352 -1.7595225538109114 -0.22609753218177142 EEDEHPYELLLTAETK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDEHPYELLLTAETK 16 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 0 ; 161.84 8.2886e-09 83873000.0 147439.0 145977.0 132943.0 113685.0 118496.0 163019.0 153607.0 143476.0 212278.0 155364.0 False True 146645.2048060128 150835.75620004017 151660.21883872923 128077.50934361437 133585.76321918197 151749.880235449 146176.4425742758 154182.9076763656 159964.93127946788 145448.53650618755 1.008227434449121 1.0370386655188066 1.0427070803306255 0.8805692543916782 0.9184400642869245 1.0433235278994601 1.005004560964127 1.0600512826047341 1.099804337135168 1.0 17.15014925464342 2.1862465695131332 1.8552372324516437 1.0552497970402341 0.9816724770140356 0.22589750164357103 0.054763769345401864 0.5377268944276524 3.6603285951936337 0.030951169183188694 0.018752234557504587 153.54885048040117 -2.1862465695131332 -0.07357732002619854 EEDEPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDEPEER 8 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 197.17 0.00034018 2067120000.0 1621440.0 1850660.0 1622350.0 1669480.0 1678320.0 1722310.0 1686700.0 1653620.0 1847100.0 1598960.0 False True 1612710.3471989206 1912258.0993524035 1850762.7782810077 1880835.9968243572 1892044.1038179975 1603250.763581646 1605107.8771802809 1777021.5213122168 1391906.9548719358 1496913.0038614706 1.0773574302840154 1.2774677582594975 1.2363863320759043 1.2564764899312852 1.263963970476065 1.0710380359084757 1.072278664852071 1.1871241125757956 0.9298516021180531 1.0 20.513558948005297 2.731135802609729 24.51293383900235 1.0753947415952025 1.2280714740446517 0.5106217411150915 0.08166901997848279 399.2796139911319 1318213.8156981817 0.025847219881714723 0.024829534439568056 538.4381242159317 -2.731135802609729 0.15267673244944913 EEDEPEERS(ph)GDETPGSEVPGDK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEDEPEERSGDETPGSEVPGDK 22 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(0.989)GDET(0.011)PGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(0.996)GDET(0.004)PGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK 341.12 1.6188e-81 16753440000.0 5089240.0 4331100.0 3541690.0 3672220.0 3903850.0 5305710.0 5288610.0 4842930.0 8067300.0 5073000.0 True False 5061840.097307722 4475258.045294764 4040329.167078662 4137122.675478803 4400982.157568217 4938938.755997912 5032779.729847862 5204334.028500248 6079222.011281665 4749236.796786185 1.0658217970375947 0.9423109936996987 0.8507323049911426 0.8711131603878752 0.9266714518312432 1.039943672494936 1.0597028417815575 1.0958253401940343 1.2800418828127254 1.0 22.179264260039748 2.3506216080733457 1.5142630573378775 1.12999764539063 0.9237978922909037 0.4976684930240103 0.08473960239689952 0.32102691274826567 1.480546266020763 0.04467720165843181 0.029944469057892928 224.19277266658463 -2.3506216080733457 -0.20619975309972627 EEDFHPELESLDGDLDPGLPSTEDVILK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEDFHPELESLDGDLDPGLPSTEDVILK 28 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 0 ;; 165.85 6.5352e-12 134784000.0 153928.0 142959.0 130290.0 110181.0 120603.0 163019.0 135902.0 135616.0 191475.0 153025.0 False True 153099.26875100855 147717.30389445953 148633.69949901855 124129.90330288763 135961.07718001437 151749.880235449 129327.90106394397 145736.35456409442 144288.55188354952 143258.8134887062 1.0686900514018158 1.0311219274903798 1.037518710922006 0.866473065635668 0.9490590761505425 1.0592708158050759 0.9027570305413672 1.0172941616299478 1.0071879584213121 1.0 17.12826437282781 3.9643890345836494 24.91981390288282 0.9719935286635124 1.0460096728843395 0.2863407790309008 0.05374269899762181 696.4481662441748 487361.1312468814 0.01372053882110782 0.02474945313010604 9212.744662962568 -3.9643890345836494 0.07401614422082714 EEDFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDFKR 6 1 P50416;P50416-2 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform 0 ; 101.52 0.05841 819750000.0 865090.0 1105710.0 1139400.0 945790.0 1294890.0 1742640.0 1081440.0 999910.0 1557800.0 1326630.0 False True 860432.4515605354 1142512.888934189 1299817.6161576621 1065526.9170259673 1459786.5660856604 1622175.3985333177 1029126.6156980145 1074528.3616400992 1173901.0634505462 1241963.3376149153 0.6928002023094518 0.9199248112494911 1.0465829197936318 0.8579374968283853 1.1753861985081266 1.3061379103577786 0.8286288206174945 0.8651852507205561 0.9451978394989687 1.0 20.24419115558641 4.699738147202439 2.87131901675 0.9941012802052602 0.6530314392826271 0.3039757046402264 0.1408532597938852 0.507662906046115 6.2203627615871735 0.037802331692513444 0.38472328695241337 50088.513970563516 -4.699738147202439 -0.34106984092263315 EEDFRRPS(ph)EEDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDFRRPSEEDFR 13 2 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 EEDFRRPS(1)EEDFR;EEDFRRPS(1)EEDFR 131.48 0.00010231 538450000.0 464800.0 516120.0 509260.0 546200.0 505300.0 614480.0 533260.0 550840.0 720680.0 557560.0 True False 462297.5684441344 533298.7421988712 580959.3814327284 615348.8639968523 569646.9598522543 572002.4439303317 507464.1765489749 591946.4779088432 543078.0706172418 521976.0434488683 0.8856681724118629 1.0216919893012524 1.1130000863528864 1.1788833447815705 1.0913277860194663 1.0958404147265504 0.9721982127685234 1.1340491299134288 1.0404271947596395 1.0 18.993624068989387 4.6503835206662565 2.8568028218843913 1.0841780556875296 0.8690142537021613 0.4936846040368713 0.058588137879136415 0.26385109130869616 3.308253752967129 0.014255951172533898 0.11780045494052892 44707.82277273307 -4.6503835206662565 -0.21516380198536822 EEDFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEDFTR 6 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 109.11 0.069422 918430000.0 1223800.0 1464600.0 1214500.0 1260300.0 1243300.0 1281800.0 1331300.0 1219400.0 1536100.0 1364500.0 False True 1217211.1967769621 1513348.3256306055 1385491.0433767606 1419853.8507785306 1401626.8853835498 1193192.1830326442 1266899.9329401231 1310397.8199877357 1157548.737685442 1277416.441792777 0.952869523949981 1.184694572669436 1.0846040477076586 1.1115042865628466 1.0972356700031596 0.9340667177870913 0.9917673606596964 1.0258188145352751 0.9061639570419902 1.0 20.28479749418275 2.751813774915287 24.64516552876698 0.9792027022154266 1.0929737430095627 0.4556745807760867 0.06213604243525168 576.6015771264947 1072230.099229445 0.018075440467997604 0.01906753345079885 564.6947822733682 -2.751813774915287 0.11377104079413614 EEDGADAS(ph)EEDLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDGADASEEDLTR 14 0 E5RHA3;Q86X53 E5RHA3 ERICH1 Glutamate-rich protein 1 1 EEDGADAS(1)EEDLTR;EEDGADAS(1)EEDLTR 349.42 7.606999999999997e-82 841410000.0 1122770.0 1110360.0 987550.0 942650.0 985820.0 1168490.0 1102490.0 1099980.0 1312910.0 1140300.0 True False 1116725.1310714744 1147317.6613732062 1126588.4560615232 1061989.393347919 1111358.333587074 1087715.0366295932 1049158.3467792065 1182066.0931852623 989360.9225926659 1067525.0777400525 1.046087960233757 1.0747453950234822 1.0553273918833903 0.9948144689922859 1.041060633385603 1.0189128661335833 0.9827950355979194 1.1072958545270832 0.9267800290810405 1.0 20.025838530604368 3.881539427546189 6.854944756022865 1.019972882001516 1.0614891831010382 0.1794567527040457 0.044257205971226315 0.46420026340860027 24.24952956555044 0.011094723731212546 0.020217354386895977 7612.712480921237 -3.881539427546189 0.04151630109952231 EEDGSTCLHHAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDGSTCLHHAAK 13 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;H0Y4K5;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 0 ; 123.95 0.00012576 239817000.0 297450.0 293040.0 230060.0 242660.0 256530.0 354330.0 320400.0 162133.0 399630.0 247210.0 False True 295848.56224980165 302793.6592535795 262450.44828263245 273380.7311195094 289197.5749275651 329836.0011031019 304901.02795314044 174232.18775469216 301146.5412676475 231432.84615287074 1.278334372876276 1.3083434969882022 1.1340242003041925 1.181252945136968 1.249596069593935 1.4251909639707403 1.3174492429295925 0.752841226519786 1.3012264519649388 1.0 17.820234108195077 1.7691859185710206 24.999999999991875 0.9950284511540928 1.2684994356894999 0.38987336239936954 0.14391737420763712 23.26177206844754 18999.11890718911 0.06476877248750545 0.035925400771227585 58.7740906643602 -1.7691859185710206 0.2734709845354071 EEDIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDIGK 6 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3;C9JAX4;A0A0C4DG51;Q9NP80-3;Q9NP80-2;Q9NP80 P22314 UBA1;PNPLA8 Ubiquitin-like modifier-activating enzyme 1;Calcium-independent phospholipase A2-gamma 0 ; 117.7 0.05234 1043240000.0 1626780.0 1508090.0 1268110.0 1163650.0 1257870.0 1166000.0 1636940.0 1600560.0 2380800.0 1691230.0 False True 1618021.5972322496 1558285.8639903446 1446648.865390285 1310967.9706882783 1418052.2885203925 1085397.1644687632 1557754.9584819404 1720001.9146789988 1794083.7410855414 1583294.253465149 1.021933600586939 0.9842048378435835 0.9136955194678398 0.8280002076803691 0.8956340777571111 0.68553091890108 0.9838695208251315 1.0863438119065079 1.133133488711315 1.0 20.594497972976395 2.0019473101054612 24.999837615997613 1.0708413341194145 0.8865805210846939 0.45962103609762983 0.09036585804223943 56.36725721490437 723641.8873850898 0.035882539914386835 0.026322159725521783 100.44939147046156 -2.0019473101054612 -0.18426081303472064 EEDKEPLIELFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEDKEPLIELFVK 13 1 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 ; 146.47 3.8585e-05 177816000.0 609880.0 477040.0 413700.0 352100.0 399770.0 600000.0 561420.0 510680.0 730020.0 553300.0 False True 606596.473844038 492917.98802323034 471945.3640551381 396675.8238983736 450678.33987756824 558523.4122480771 534261.9697673285 548789.5347804957 550116.3527668294 517987.920296038 1.1710629728534188 0.9516013186977801 0.911112683449093 0.7658013022227764 0.8700556947737289 1.0782556703810244 1.031417816581494 1.0594639629180043 1.0620254473355857 1.0 18.982558928464073 2.731376246375068 24.885690687616616 1.0494041877994207 0.9243009560902353 0.24863938177970857 0.0968156055293843 747.3989210467691 2588882.9299218003 0.03279484364453286 0.0315160655605931 538.7363088357995 -2.731376246375068 -0.12510323170918536 EEDLEDKNNFGAEPPHQNGECYPNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEDLEDKNNFGAEPPHQNGECYPNEK 26 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 204.31 2.3056e-25 567190000.0 491670.0 353280.0 305940.0 293390.0 316290.0 486090.0 406170.0 398850.0 767620.0 467610.0 False True 489022.9033496724 365038.71123773034 349013.69272184937 330533.1439180454 356567.65670229425 452487.74243277987 386522.00537992205 428614.2123192624 578450.3365810162 437766.72945893795 1.117085585636179 0.8338658163650388 0.7972595202774232 0.7550440032904534 0.8145152034349379 1.033627528049097 0.8829405694161538 0.9790927073170048 1.3213666038439182 1.0 18.73980278741036 1.4549335894966497 4.629737435027197 1.1631631452110205 0.8850783780823627 0.41078334119149107 0.12699791917153536 0.17226208535440016 7.279273602622515 0.08350037026887401 0.03208533745564493 28.505823349961823 -1.4549335894966497 -0.2780847671286578 EEDRPPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEDRPPLR 8 1 P53618 P53618 COPB1 Coatomer subunit beta 0 ;; 156.01 0.00036468 1704660000.0 1504950.0 1931070.0 1669240.0 1768410.0 1747870.0 1845140.0 1781690.0 1592340.0 1840660.0 1754530.0 False True 1496847.516415663 1995344.4975935365 1904254.4827058213 1992290.524680837 1970450.884062849 1717589.8147923634 1695502.8479832392 1711168.4965386847 1387054.0065803586 1642554.3932712923 0.9112925103408959 1.2147813830503547 1.1593250674112108 1.212922100383546 1.1996259558494875 1.0456821532537692 1.0322354345943425 1.041772804327497 0.8444493602540114 1.0 20.647509715581624 1.9939849331470898 1.2231931862495125 0.9457479624365127 1.1442868739379808 0.388092589663632 0.09574179821084691 0.46567220876770354 1.2897846815362612 0.06985078419816672 0.03235699306460349 98.62452695156679 -1.9939849331470898 0.19853891150146807 EEEADMSS(ph)PTQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEEADMSSPTQR 12 0 O00515;E9PDI4 O00515 LAD1 Ladinin-1 1 EEEADMS(0.019)S(0.975)PT(0.006)QR;EEEADMS(0.005)S(0.995)PTQR;EEEADMS(0.001)S(0.987)PT(0.011)QR 272.54 1.0101e-27 716526000.0 864940.0 819540.0 754350.0 639850.0 714670.0 860640.0 677680.0 629370.0 769630.0 720000.0 True False 860283.2591438679 846817.8934776087 860555.9230722581 720854.944394702 805678.9883190382 801145.9825286433 644898.0294109983 676336.7852761046 579964.9990136363 674048.9835769878 1.2762919017822523 1.2563150662786926 1.2766964182714595 1.06943999910708 1.1952825505997013 1.1885575114692521 0.956752469217751 1.0033941178680756 0.860419662582867 1.0 19.362493911238285 2.368858710108505 0.8707901110829778 0.9239672530663953 1.2431880872451715 0.7475035156195952 0.07126684746570244 0.2941859872261665 0.43745720295722784 0.05211725844825469 0.03384516418018102 233.8076463826536 -2.368858710108505 0.3192208341787762 EEEDDVDLELR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEEDDVDLELR 11 0 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 0 ; 180.67 1.5263e-05 295290000.0 483690.0 577520.0 483480.0 449400.0 505330.0 553820.0 524790.0 510950.0 628580.0 553060.0 False True 481085.8667830106 596742.4040817883 551549.7815165053 506293.9939219804 569680.7801744293 515535.7269520508 499403.90280751686 549079.6835515276 473674.88154047023 517763.2373015121 0.9291618873721949 1.1525391551395214 1.0652548149055203 0.9778484786998256 1.1002727484931183 0.9956978205693577 0.9645410620698357 1.0604841054633989 0.9148484237876324 1.0 18.9819330077597 2.5913620151852 14.704781156856013 0.9945851361671701 1.0483788268386554 0.15271130202074135 0.06681837392224221 2.394440116127001 297.7235237931811 0.020719490221550615 0.019533664389374643 390.2671664295349 -2.5913620151852 0.053793690671485206 EEEDKDDEEKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 EEEDKDDEEKPK 12 2 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ;;; 133.71 8.9063e-05 3467700000.0 7652100.0 3531750.0 2490760.0 2214490.0 2290120.0 4492960.0 4295190.0 4331060.0 9609420.0 3795200.0 False True 7610901.94382823 3649302.163762041 2841437.3579259734 2494844.206943225 2581753.2073952993 4182372.2504902007 4087415.250480804 4654265.689877059 7241307.2006309815 3552987.0867658057 2.14211359567767 1.0271081978752443 0.7997319687734812 0.7021821768607155 0.7266430032948428 1.1771425418540737 1.1504165792511998 1.3099585155300184 2.038089929345215 1.0 21.76060101456725 1.5842234002905085 3.5437268160730424 1.5565585401466482 1.0617546378879916 0.10991672493926874 0.45309805332601655 0.34243410481047293 9.943470198949754 0.2840733968869427 0.11870784221732093 38.3904674574739 -1.5842234002905085 -0.49480390225865656 EEEEDGQEGS(ph)IHNLPLVTSQRPFYDGPMPTPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPR 32 1 O75717;O75717-2;H3BSQ1 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR 182.33 9.1843e-20 389190000.0 229754.0 145314.0 147370.0 129893.0 118800.0 171299.0 146654.0 138426.0 198286.0 170862.0 True False 228517.02999206888 150150.68864583195 168118.41503699715 146337.44048177058 133928.47581723274 159457.50332447226 139559.78574731536 148756.05103298518 149421.0721962737 159957.44087768227 1.4286114402568706 0.9386914908238033 1.0510196594452614 0.9148523487173894 0.8372756845969198 0.9968745589422607 0.8724807360104944 0.9299726865894118 0.9341301747290042 1.0 17.287328579535885 EEEEEEEEDQEGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEEEEEEEDQEGDR 14 0 A0A0B4J2E5;Q15269 A0A0B4J2E5 PWP2 Periodic tryptophan protein 2 homolog 0 231.92 5.062399999999999e-09 0.0 75784.0 70536.0 66453.0 62194.0 66991.0 70862.0 65609.0 64523.0 66172.0 64511.0 False True 75375.98736439404 72883.74812008765 75809.00478016952 70067.75402310547 75521.9067632344 65963.47673120548 62435.242019280755 69338.03390115517 49864.797259371844 60393.852749354206 1.2480738342231368 1.2068073951593856 1.255243726456583 1.1601802308241498 1.2504899642131533 1.0922217035062534 1.0338012757423956 1.1480975421276896 0.8256601456827086 1.0 15.882114090368733 2.0975682607041857 0.7319996747221823 0.9546871901587869 1.2342507358266392 0.6629920626523633 0.07588144370339074 0.422982857362309 0.43101881733811415 0.06338682212837037 0.036467419730862524 125.18960256786677 -2.0975682607041857 0.27956354566785235 EEEEEEEENR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEEEEEEENR 10 0 G3V583;Q8N128;Q8N128-2 G3V583 FAM177A1 Protein FAM177A1 0 204.34 0.0077197 0.0 80417.0 69004.0 52055.0 69480.0 63058.0 83034.0 68491.0 55207.0 92983.0 72619.0 False True 79984.04380716865 71300.75642620123 59383.89152982892 78276.16087605503 71088.06252595174 77294.0550210115 65177.82866897172 59326.82667546573 70068.58555836571 67984.39324774609 1.1765059594735794 1.048781242576804 0.8734929988037761 1.151384268309994 1.045652673061233 1.1369382196196045 0.9587175167020054 0.8726536171216416 1.0306569230238547 1.0 16.052915973437614 2.122666149802556 7.775845975241433 0.9444298689924038 1.064216171228573 0.24451272929705625 0.08841091319251858 0.3022602571556603 19.364891612218212 0.03332604967546913 0.02458458868826759 132.63744571661837 -2.122666149802556 0.11978630223616915 EEEELNLPIS(ph)PEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EEEELNLPISPEEER 15 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 EEEELNLPIS(1)PEEER;EEEELNLPIS(1)PEEER 334.61 5.620799999999998e-69 235353000.0 502850.0 551830.0 460440.0 496410.0 490320.0 523860.0 499220.0 451510.0 555980.0 477430.0 True False 500142.71147188765 570197.3279617206 525265.9497837758 559255.4551019357 552759.3456456698 487646.7912337962 475070.8213944027 485203.9689213244 418966.1787503115 446960.00865161227 1.1189876091615374 1.275723368812996 1.1751967505289718 1.2512427158507895 1.2367087322045494 1.0910300290733566 1.0628933510798764 1.085564613230357 0.9373683789166004 1.0 18.769786227767018 2.205036052920606 1.0388200355659283 0.9958206657286606 1.216879372225346 0.7308617389900491 0.054672955989717026 0.27295868669227297 0.5589022548013951 0.03863835685911567 0.02120078449325387 160.33784894984726 -2.205036052920606 0.22105870649668535 EEEEVGFDWSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEEEVGFDWSDR 12 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 167.09 0.0001167 222770000.0 326850.0 318290.0 300000.0 215060.0 249140.0 285560.0 269680.0 292580.0 355420.0 314900.0 False True 325090.2759164491 328884.0902396323 342237.3923532544 242286.57394940162 280866.50223152695 265819.90933593485 256634.54812235612 314413.80529113667 267831.5033839984 294802.812400546 1.1027380413004737 1.115607030888092 1.1609027389069122 0.8218597779868158 0.9527266715824817 0.9016871554629801 0.870529511006391 1.0665224077440123 0.9085106794032145 1.0 18.169390762156656 3.7545985275575737 24.992386375978686 0.938154717968365 1.1253350622133573 0.650132329935672 0.06533920168631419 529.5230346178954 825170.1106366061 0.017295532452900667 0.031055169835925295 5683.273122645233 -3.7545985275575737 0.1871803442449923 EEEGTGVVHQAPYFGAEDYR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEEGTGVVHQAPYFGAEDYR 20 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;; 219.22 9.3588e-25 2867430000.0 1480570.0 1627550.0 1334200.0 1340160.0 1361000.0 1547190.0 1507130.0 1479310.0 1951920.0 1514600.0 False True 1472598.7756267902 1681722.0178752483 1522043.7629257077 1509824.1185903014 1534315.282720993 1440236.3969935065 1434224.3641042958 1589703.6239839718 1470895.4703879775 1417936.9312857017 1.038550264920122 1.1860344284497633 1.0734213414877403 1.0648034374993547 1.082075830643445 1.0157266978634831 1.0114867117565136 1.1211384575070784 1.0373490089254225 1.0 20.435361933393224 4.015312930179268 24.963954240971436 1.0554944195921072 1.1166512502893102 0.21174762071710496 0.04789905515098332 337.0814209609889 549520.3246686754 0.011462120922813401 0.02474491876822616 10358.88305458306 -4.015312930179268 0.06115683069720301 EEEHDCFLEEIMTK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEEHDCFLEEIMTK 14 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 ;; 194.7 1.1394e-07 120206000.0 299251.0 267622.0 231831.0 199838.0 221459.0 310540.0 258259.0 267693.0 379083.0 286654.0 False True 297639.865865912 276529.63648908475 264470.7896888249 225137.47031014817 249660.4909596681 289073.1007325301 245766.02552481293 287669.61097751104 285663.07410195324 268359.4963031636 1.1091087513805384 1.0304447589836412 0.9855093385257154 0.8389398303826452 0.9303210596193273 1.0771860311064474 0.9158089387944484 1.071956144427 1.064479096276295 1.0 18.03380741537833 1.662255960601017 10.47887162502969 1.050746641883056 0.9818455307236991 0.11808935535349585 0.0763863539326594 0.23819778732893618 38.13689592703702 0.038049713094913104 0.020522986334667297 45.94687306271964 -1.662255960601017 -0.06890111115935693 EEEIEFLYNENTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEEIEFLYNENTVR 14 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 190.36 1.4252e-06 46245000.0 39361.0 43872.0 45621.0 43408.0 48319.0 47195.0 40950.0 36559.0 42072.0 42339.0 False True 39149.0847494182 45332.25299881597 52044.04025515944 48903.44834927749 54472.13824084909 43932.520735080034 38969.092055808665 39287.21822284044 31703.919335916926 39636.88877175843 0.987693180835934 1.1436884781712617 1.3130203168781802 1.2337862497452512 1.3742788581242251 1.108374599935358 0.9831521409312637 0.9911781534890012 0.7998589273360476 1.0 15.274556104694659 2.3202790102863053 2.9045531703714844 0.9432110142375277 1.2156551747338629 0.5669452295496149 0.10977236021561357 0.19904541967533576 3.419874126695079 0.04479144676021864 0.034675673635315214 209.06388198079705 -2.3202790102863053 0.27244416049633513 EEEIEVDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEEIEVDSR 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 99.442 0.01241 118210000.0 210610.0 270840.0 217580.0 202850.0 227210.0 259710.0 253000.0 219780.0 300250.0 261850.0 False True 209476.09916097092 279854.74567376246 248213.37276073714 228530.78920132085 256143.84672082064 241756.8589915805 240761.42344614383 236181.09962022665 226257.4106438738 245138.5088189361 0.8545213894390371 1.1416188628301904 1.0125433737710798 0.9322516902887664 1.0448943658624166 0.9862051464551685 0.9821444399173316 0.9634598038396099 0.9229778370357623 1.0 17.903237609470597 2.028694886398694 1.970123069129001 0.9581616317707298 1.0027144840656392 0.03617496062926673 0.07161970937105971 1.0033158540640974 7.321099220910425 0.0391143814560136 0.020742851927030643 106.83040784535824 -2.028694886398694 0.04455285229490946 EEEKLELQK ddPTM_BT-474_Trastuzumab_2h_R1 5 EEEKLELQK 9 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;;; 121.6 0.00055563 1595530000.0 3299860.0 2661840.0 2320398.0 2164740.0 2215560.0 3269050.0 3137250.0 3164000.0 4945770.0 3225870.0 False True 3282093.9204089115 2750437.7352837436 2647089.8691390273 2438795.862044207 2497698.43334704 3043068.268015966 2985489.2320411666 3400113.746466454 3726951.253422652 3019992.214793742 1.0867888679749693 0.9107433197378595 0.8765220837894832 0.8075503804604246 0.8270545934230583 1.0076410969237548 0.9885751418220354 1.1258683813192125 1.2340930003613249 1.0 21.526113399770907 2.058527689548605 1.7154005697256662 1.1333942018217296 0.9008679901869945 0.4850629806511634 0.0926491057130856 0.2941433924830001 1.635078480905208 0.056559884110331304 0.02954198221243967 114.42678331955597 -2.058527689548605 -0.23252621163473508 EEELEETGNQHNDVEIEEAGEEEEKEIAIVHS(ph)DAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEELEETGNQHNDVEIEEAGEEEEKEIAIVHSDAEK 36 1 Q9H307 Q9H307 PNN Pinin 1 EEELEETGNQHNDVEIEEAGEEEEKEIAIVHS(1)DAEK 147.86 1.6985e-13 124660000.0 84104.0 52369.0 52548.0 46726.0 51298.0 79203.0 76101.0 66737.0 121040.0 74488.0 True False 83651.19340883286 54112.07050727097 59946.30164459611 52641.5068090753 57830.49623293274 73727.88303380756 72419.70389594865 71717.25382361942 91211.31385290425 69734.1120676147 1.199573507549993 0.775977049149253 0.8596409973137931 0.754888895093892 0.829299958345492 1.0572714106163779 1.0385118810393683 1.0284386177324787 1.307987025983282 1.0 16.08957693624429 2.677878710399537 5.522716447108883 1.0812236889312126 0.8694890205531528 0.3419733244902253 0.13983529778859663 0.24495887810862396 15.58396271088309 0.04478629292568832 0.04244512220050593 476.29794791601483 -2.677878710399537 -0.21173466837805976 EEEMDDMDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEEMDDMDR 9 0 Q9HD45;Q5TB53 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 ; 172.21 0.00013112 646800000.0 523560.0 595750.0 522850.0 461500.0 559640.0 569650.0 526470.0 523740.0 496890.0 515760.0 False True 520741.21113298455 615579.1786115206 596462.7353063305 519925.85268133885 630906.8367538395 530271.4363118625 501002.634789294 562824.1382978327 374438.1174848768 482843.7552356491 1.078488031555549 1.274903469158653 1.2353121042545747 1.0767993725580898 1.3066480200120412 1.0982257315372477 1.0376081897233662 1.1656444392102567 0.7754850578985628 1.0 18.881196893282826 1.2529315247518544 24.991268937200836 0.8877425644473019 1.1599267828379114 0.5461472116446975 0.09898343759256305 142.60277881725426 247991.21368471137 0.06456027542814108 0.023339208971355916 17.903235513129108 -1.2529315247518544 0.27218421839060947 EEEMGEEEEVER ddPTM_BT-474_Trastuzumab_2h_R1 3 EEEMGEEEEVER 12 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;; 292.68 8.4438e-36 1672910000.0 594079.0 638044.0 550945.0 551445.0 566771.0 678159.0 640638.0 616905.0 735513.0 647362.0 False True 590880.5446723823 659280.9088342569 628513.2671002136 621257.8804590708 638945.9273350916 631279.4645445736 609647.8924651813 662941.5836801169 554255.6765192585 606046.8029255084 0.9749751039360071 1.087838275281343 1.0370705101755429 1.0250988495610167 1.054284791621328 1.0416348399121358 1.0059419330690134 1.0938785263447743 0.9145426951247927 1.0 19.209069686849894 1.234991509840786 24.999999996970438 0.957271352216586 1.0424320762996733 0.42626091809134403 0.03835653311728751 79.63990825411341 557801.1172598753 0.029290527959415273 0.008460758654419873 17.178748035552992 -1.234991509840786 0.08516072408308728 EEEMMIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEEMMIR 7 0 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;; 162.51 0.0029527 2047620000.0 1981570.0 2344190.0 2082740.0 2008330.0 1958100.0 2112830.0 2184680.0 2052460.0 2796420.0 2276470.0 False True 1970901.4472931258 2422214.94705722 2375971.6884993934 2262584.372081286 2207452.4284320143 1966775.0351668422 2078998.6821119424 2205624.9873807007 2107279.7611082164 2131183.735615981 0.9247918958632029 1.1365584799553297 1.1148600886880646 1.0616561745800515 1.035787009604777 0.922855689210851 0.9755135830703235 1.0349295325976218 0.988783710147424 1.0 21.023223546787943 2.98010464020468 7.752836477068793 0.9887209084555121 1.0665979704894641 0.26819427868615175 0.058425203242920554 0.2528866732581587 76.77226644509962 0.01764900166695309 0.0194802687536294 955.2227124991853 -2.98010464020468 0.07787706203395206 EEEPVKK ddPTM_BT-474_Trastuzumab_2h_R1 7 EEEPVKK 7 1 Q14103-3;Q14103;H0Y8G5;H0YA96;Q14103-2;Q14103-4;Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q14103-3;Q14103-2;Q99729-3 HNRNPD;HNRNPAB Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein A/B 0 ;;;;;; 114.93 0.0092902 26345640000.0 29317990.0 22641070.0 19623370.0 17327690.0 18008270.0 23560970.0 25151660.0 27467680.0 38118210.0 26563710.0 False True 29160145.199374933 23394664.32813417 22386169.92661027 19521373.777351916 20301516.441121206 21932255.600457635 23934978.117128197 29517457.75965288 28724487.90334526 24868391.285463657 1.1725786708374635 0.940738950886987 0.9001856883157406 0.7849873983912566 0.8163582520509909 0.8819330268973898 0.9624658805782476 1.1869468121529334 1.1550601554245132 1.0 24.56780984810129 1.887048386525969 4.6689380325036085 1.1286535895008674 0.907094135674726 0.3985375855852883 0.10791001201219236 0.21182929839439588 6.941878375107905 0.05234900615885465 0.030374109867882464 77.0989363360362 -1.887048386525969 -0.2215594538261414 EEEQEDLTKDMDEPS(ph)PVPNVEEVTLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEEQEDLTKDMDEPSPVPNVEEVTLPK 27 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 EEEQEDLTKDMDEPS(1)PVPNVEEVTLPK 104.3 0.0013337 102340000.0 139520.0 110430.0 95637.0 99268.0 96079.0 143130.0 142610.0 129750.0 265540.0 144240.0 True False 138768.8398221294 114105.59579365542 109101.85830829396 111835.31862182269 108314.09114515086 133235.75999177893 135711.40947689555 139432.60385715004 200101.22505370277 135034.47970992312 1.0276548635595022 0.8450108153026806 0.8079555572966488 0.8281982413829702 0.8021217349659718 0.9866795523483474 1.0050130142199725 1.0325703787408582 1.4818528236903197 1.0 17.042968306566227 1.7853531694427862 1.5262365285037889 1.2199680153851238 0.8694331485013354 0.49242112234715496 0.13525925311901466 0.29712863058733086 1.325720749243923 0.09816571280116539 0.03982469461293541 61.0032775884854 -1.7853531694427862 -0.35053486688378843 EEEWDPEYTPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEEWDPEYTPK 11 0 Q9NYF8;Q9NYF8-2;H0YF14;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 Q9NYF8;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 0 ;; 145.34 8.442299999999999e-05 511140000.0 687860.0 667370.0 557140.0 536050.0 519890.0 657940.0 648270.0 659140.0 926240.0 681400.0 False True 684156.638188431 689583.0070163157 635580.4692523086 603913.875037555 586094.9098705482 612458.1564241663 616910.703468109 708328.3738451008 697980.5629801225 637912.4686241102 1.0724929701782804 1.0809994175276927 0.9963443270252557 0.9467033562459038 0.9187701114146186 0.9600974844482263 0.9670773559242397 1.110384901823393 1.094163537021891 1.0 19.282998952117595 -0.5143422515805265 7.445478699737964 0.9999028282037885 1.0158498158366316 0.005557791517299848 0.06526567985133576 0.0 0.0 0.07104366341565062 0.01674515205384707 0.3059551362972252 0.5143422515805265 0.01594698763284308 EEFASTCPDDEEIELAYEQVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEFASTCPDDEEIELAYEQVAK 22 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 ;; 207.82 7.6277e-23 73970000.0 57022.0 57446.0 46582.5 48623.2 44861.6 60382.0 51442.7 55868.4 72348.0 61866.0 False True 56714.99988773976 59358.05538315965 53140.911097651646 54778.89213455098 50574.45884446437 56207.93446393905 48954.22007080214 60037.58370198687 54518.80481353201 57917.658913852654 0.9792350200497271 1.0248697287894433 0.9175251916983386 0.9458063941436184 0.8732131062080627 0.9704800835880354 0.8452382397502837 1.036602390840545 0.941315754744574 1.0 15.821715668061133 -0.6606490215597679 5.769725833273233 1.0000000009390735 0.9498365436267991 0.06863954571148279 0.056915325725058766 7.997126779979741e-10 1.3860496017079288e-10 0.05366780774741647 0.012649623219549886 0.21844946148647676 0.6606490215597679 -0.05016345731227434 EEFEHQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEFEHQQK 8 0 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 91.853 0.012192 1855600000.0 1883260.0 1414620.0 1301800.0 1149230.0 1236270.0 1648500.0 1361950.0 1620790.0 1885650.0 1493880.0 False True 1873120.7374098569 1461704.7715441526 1485082.1245515565 1294722.4001667935 1393701.6565536242 1534543.0751515918 1296067.2753457532 1741741.5800048553 1420956.823915471 1398539.2994249852 1.3393407951996756 1.0451653179464733 1.0618808675323987 0.9257676210451316 0.9965409317611954 1.097247017500706 0.9267292494952671 1.2454005266215822 1.0160292417236347 1.0 20.415489363924067 4.738567076488548 11.916192485163151 1.0449665843354219 1.3395656355208516 0.518517366788084 0.08751341047500497 0.05244376221906204 653.8061712748015 0.021511142496646207 0.12395331056967916 54773.06910634971 -4.738567076488548 0.29459905118542973 EEFKPNKPKPCGLCNQFGHEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEFKPNKPKPCGLCNQFGHEVK 22 3 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 62.06399999999999 0.025559 2401100000.0 1478520.0 988800.0 964690.0 858170.0 896270.0 1430820.0 1446290.0 1344960.0 2338320.0 1412110.0 False True 1470559.8125990145 1021711.6102577768 1100509.9667642037 966814.2340098482 1010404.6718915075 1331910.781187989 1376327.4273356653 1445327.7447684952 1762072.3678827046 1321987.9308318058 1.1123852028465389 0.7728600136424145 0.8324659712072815 0.7313336313150156 0.7643070321041073 1.00750600676811 1.0411043816940664 1.0932987443078115 1.3328959567535492 1.0 20.3342775750589 2.309750327721626 1.7339232672958445 1.142380424546067 0.8343156099943994 0.5037056906042179 0.12827933196610253 0.2857192413820179 1.7369694611909015 0.06291170514069905 0.04220084491395766 204.056450387332 -2.309750327721626 -0.30806481455166757 EEFLIPIYHQVAVQFADLHDTPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEFLIPIYHQVAVQFADLHDTPGR 24 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 238.02 1.0712e-37 635610000.0 328230.0 359760.0 368070.0 357800.0 400310.0 452190.0 391070.0 379710.0 452470.0 426970.0 False True 326462.84614978125 371734.3941204873 419891.0566782082 403097.4433139396 451287.105676738 420931.1696407632 372152.4500675232 408045.88832831173 340964.8312873726 399720.409052592 0.8167279897555291 0.9299860244853735 1.050461890783671 1.0084484909573463 1.129006914473965 1.0530639919999192 0.9310318953930581 1.020828256669337 0.8530083117234857 1.0 18.608631710660944 4.574206153415363 2.985385010019613 1.009021111703877 0.8130584804904604 0.4074534789112436 0.07015516031465358 0.28896291799986346 4.3008974183931725 0.01752064809912579 0.10890065128465203 37515.103885031975 -4.574206153415363 -0.19596263121341662 EEFTAFLHPEEFEHMK ddPTM_BT-474_Trastuzumab_2h_R1 8 EEFTAFLHPEEFEHMK 16 0 Q15293;Q15293-2;E9PP27 Q15293 RCN1 Reticulocalbin-1 0 ;;;;;;; 249.13 9.3309e-21 3061037000.0 1836728.0 2042004.0 1733774.0 1684176.0 1751030.0 2035773.0 2056431.0 1499410.0 2719088.0 1825745.0 False True 1826839.2605276655 2109970.868722516 1977874.3089662385 1897392.5089175422 1974013.2913320647 1895044.8042041757 1956953.5762006976 1611303.5880497058 2049005.1963125058 1709224.3910010632 1.0688118366118784 1.2344610104041065 1.1571765061273387 1.110089768732046 1.1549175764897195 1.1087162189946755 1.144936607799368 0.9427103875495207 1.1987923920933745 1.0 20.70491037917243 1.8011403887395132 24.999999999873243 1.041109177073311 1.1424112210873867 0.2535101107716816 0.07258591519300109 211.85242950936083 84652.05304853384 0.029137828458732827 0.017949872152884502 63.261631599149695 -1.8011403887395132 0.10130204401407572 EEFTAFLHPEEYDYMK ddPTM_BT-474_Trastuzumab_2h_R1 11 EEFTAFLHPEEYDYMK 16 0 O43852;O43852-3;O43852-15;O43852-6;H0Y875;O43852-10;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;;;;;;;; 225.67 6.662899999999999e-15 6115721000.0 10019336.0 10927042.0 9794465.0 8905214.0 9277012.0 11277848.0 11849260.0 10776206.0 14535470.0 10783294.0 False True 9965393.008228881 11290741.987433612 11173440.536984077 10032613.17932783 10458384.489041911 10498236.91295859 11276066.025231052 11580381.212185286 10953398.183819184 10095094.944877526 0.9871519844680156 1.1184384148029023 1.1068187667371794 0.9938106807423936 1.0359867387229207 1.0399344404666178 1.1169846432155428 1.1471294995656705 1.085021809465713 1.0 23.267151143564412 2.2395595738878717 24.988274165419487 1.1052659991195695 1.050067163684252 0.08134054763937826 0.053572431557429856 43.979394211438894 1100164.1203571935 0.019170211959657575 0.015191317961007117 173.60393859121672 -2.2395595738878717 -0.05519883543531745 EEFWEMFDGSLYHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEFWEMFDGSLYHK 14 0 A0A0A0MTI1;Q15392-2;Q15392 A0A0A0MTI1 DHCR24 Delta(24)-sterol reductase 0 ; 227.56 1.9830000000000003e-12 944200000.0 517010.0 724670.0 764130.0 576430.0 786060.0 920540.0 743010.0 679830.0 939040.0 810550.0 False True 514226.47560521076 748790.2028777335 871712.8620629752 649405.9788973005 886160.0816573579 856905.2365180749 707067.7677261638 730562.3667067923 707626.1744913352 758820.005053232 0.6776659447310397 0.9867823698522618 1.1487742234758607 0.8558103035933325 1.16781328346133 1.129260207706256 0.931799060406377 0.9627610788352141 0.9325349487085471 1.0 19.53339818799201 4.73137051989212 4.9685061424616555 1.014513408029765 0.6623681097790968 0.5133541335790781 0.09820587804542405 0.12917728027723516 9.84403426666255 0.02351642541708687 0.1552523962068043 53872.92052595962 -4.73137051989212 -0.3521452982506683 EEGAAPS(ph)PTHVAELATMEVESAR ddPTM_BT-474_Trastuzumab_2h_R1 5 EEGAAPSPTHVAELATMEVESAR 23 0 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 EEGAAPS(0.5)PT(0.5)HVAELATMEVESAR;EEGAAPS(0.914)PT(0.086)HVAELATMEVESAR;EEGAAPS(0.928)PT(0.072)HVAELATMEVESAR;EEGAAPS(0.839)PT(0.161)HVAELATMEVESAR;EEGAAPS(0.818)PT(0.182)HVAELATMEVESAR 319.92 9.726099999999997e-74 1004685000.0 779723.0 897964.0 719497.0 701869.0 691754.0 856765.0 772267.0 739086.0 892144.0 829950.0 True False 775525.0580033689 927852.1889092993 820795.9236199649 790725.5434357495 779844.7715528117 797538.8521578737 734909.4948635689 794240.350322664 672287.0653171296 776981.8804440559 0.9981250239196642 1.1941748093005966 1.0563900449658732 1.0176885244528984 1.003684630466697 1.0264574660377783 0.94585152287407 1.0222121909313313 0.8652544959387061 1.0 19.567521429185227 3.3706675041420495 0.9275565368377299 0.9688392825870357 1.1001588122267474 0.3749454596100862 0.06215657736238988 0.6075373947407258 1.10267278574816 0.02582803071974551 0.051360797096546715 2347.8346303817193 -3.3706675041420495 0.13131952963971172 EEGDLGPVYGFQWR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEGDLGPVYGFQWR 14 0 P04818;P04818-2 P04818 TYMS Thymidylate synthase 0 164.64 9.5152e-06 31384000.0 32547.0 40486.0 34317.0 33293.0 34322.0 38735.0 44089.0 38259.0 41389.0 41989.0 False True 32371.770568311655 41833.55203569619 39148.5353112888 37507.89038639181 38692.70325756787 36057.34062238213 41956.24663366415 41114.080855265536 31189.235534185806 39309.22607140849 0.8235158461147424 1.064217137211047 0.9959121362545326 0.9541752442099877 0.9843160785531453 0.917274243885671 1.0673384044103826 1.0459142792732266 0.7934329583983148 1.0 15.262580339497356 EEGFPIRPHYFWPLLVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEGFPIRPHYFWPLLVGR 18 1 P42704;B8ZZ38;A0A0C4DG06 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 ; 141.0 7.3935e-08 629810000.0 493010.0 595740.0 651710.0 558810.0 738040.0 1128230.0 596020.0 489930.0 765850.0 682130.0 False True 490355.6889385607 615568.8457675645 743465.1032351323 629555.28870392 832025.0192941962 1050238.1156677478 567188.2355824931 526491.0644141309 577116.5293642319 638595.8793991262 0.7678654134128629 0.9639411490515277 1.1642184474078985 0.9858430174906346 1.3028975697072664 1.6446052183361222 0.8881802308467405 0.8244510830691891 0.9037272991915606 1.0 19.284543718247377 2.062678526626645 24.999997570296813 0.8814641133943373 1.1432416274006403 0.20795231944802506 0.22201862793476448 98.69779696639183 39365.77200318707 0.08868091882791869 0.06549519088322062 115.5256781676014 -2.062678526626645 0.261777514006303 EEGGFEYKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEGGFEYKR 9 1 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 82.287 0.030273 325480000.0 200340.0 202820.0 175430.0 181170.0 179330.0 204840.0 222100.0 190090.0 306100.0 220770.0 False True 199261.3916998665 209570.74109272097 200129.01913510502 204106.10342422122 202166.6125278144 190679.89294149354 211356.174495607 204275.48105746147 230665.75652985772 206680.26958929375 0.964104566419573 1.013985231919675 0.9683024873772078 0.9875451770496149 0.9781611613413864 0.922583918244371 1.0226238572051654 0.9883646923017326 1.1160511692201047 1.0 17.6570411451338 1.371897937735343 8.044106658255698 1.058047446657781 0.98135054770113 0.41567946105196873 0.03672558473552581 0.21049520930651072 14.236450374466612 0.02298538943721002 0.008399991181060298 23.544958957407893 -1.371897937735343 -0.076696898956651 EEGHAGPDDNEEVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEGHAGPDDNEEVMR 15 0 P29083 P29083 GTF2E1 General transcription factor IIE subunit 1 0 132.81 4.5149e-05 187870000.0 53516.0 62863.0 61021.0 57348.0 65264.0 70364.0 59790.0 58925.0 61360.0 61347.0 False True 53227.875802186565 64955.35695351406 69612.22639595973 64608.250919977116 73574.98354996544 65499.90229903952 56897.729280019536 63322.28271508722 46238.650181875375 57431.781938190856 0.926801746452363 1.1310002016552476 1.2120854350449668 1.1249564046177378 1.2810848117014408 1.1404818044742495 0.9907010954536274 1.1025651752062269 0.805105616114058 1.0 15.809561704524457 1.6254547919092974 1.511791834199065 0.9232925365415875 1.1388601766789146 0.34672769509343826 0.10824422418656066 0.40615579929775475 1.8209251347978057 0.08875260225999936 0.03192892537073268 42.21383340732251 -1.6254547919092974 0.2155676401373271 EEGIGPENLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEGIGPENLR 10 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 112.75 0.0036748000000000006 722280000.0 352560.0 377300.0 364540.0 363340.0 355920.0 382770.0 360480.0 370260.0 452160.0 418040.0 False True 350661.85613309836 389858.20241733326 415864.06336151843 409338.8067459105 401244.3022968811 356310.0108436615 343042.2052326719 397890.681342184 340731.2266335851 391360.32929794997 0.8960076683350624 0.9961617804152216 1.062611696253233 1.0459384257985769 1.0252554289717144 0.9104397767725609 0.8765380125472745 1.0166862902429294 0.870633023139604 1.0 18.57813799732603 2.7445199927920796 24.78560556734332 0.9377452248745543 1.0101464962949032 0.25011286155440193 0.06048842230811679 631.5902995668682 2626842.434723935 0.019027180903483765 0.019701008872112506 555.2901793728968 -2.7445199927920796 0.07240127142034891 EEGLGFPSFLDPDR ddPTM_BT-474_Trastuzumab_2h_R1 6 EEGLGFPSFLDPDR 14 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 0 ;;;;; 202.16 3.916e-08 539787000.0 375203.0 412744.0 378672.0 355827.0 388310.0 411106.0 386714.0 362851.0 439646.0 425680.0 False True 373182.9487369724 426481.9345309836 431985.72612397274 400874.66171623603 437758.97680631053 382687.2098594304 368007.1664290594 389928.78414004366 331301.1342545759 398512.73795701633 0.936439198029409 1.0701839462330662 1.0839947760228603 1.0059268463320097 1.098481767610468 0.9602885263374118 0.9234514518046666 0.9784600264950664 0.8313439012087741 1.0 18.60426631331684 2.566912588437254 6.09557756293871 0.9368477207446463 1.0411073495971854 0.42114075602224144 0.0593536288140498 0.22188839784729503 12.274059251239914 0.01851092451958183 0.017340598144508248 368.9033409770697 -2.566912588437254 0.10425962885253914 EEGLREWGS(ph)GSPPCVPGPQEGLRPMSDSVGGAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEGLREWGSGSPPCVPGPQEGLRPMSDSVGGAFR 34 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 EEGLREWGS(0.533)GS(0.467)PPCVPGPQEGLRPMSDSVGGAFR 52.341 0.032486 130920000.0 17895.0 25464.0 22166.0 27421.0 29457.0 29068.0 29376.0 24076.0 39906.0 30192.0 True False 17798.655308321417 26311.553846686955 25286.780129674156 30892.49578846152 33208.17434468206 27058.597578711848 27954.970652782282 25872.673375450806 30071.701013003898 28265.120711328353 0.6297038491396894 0.9308841846248181 0.8946284145724341 1.0929546738528573 1.1748817450255074 0.9573140640389006 0.989027110065666 0.9153569036441908 1.063915534631044 1.0 14.786735237846969 5.0627189563618815 1.3084575087323482 1.0129465297953084 0.17079979203440895 0.6931640811336995 0.07696849501624746 1.7358263959362767 1.4902970167126268 0.022890229145462508 2.38601660666975 115536.43328926644 -5.0627189563618815 -0.8421467377608994 EEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 EEGS(0.011)LS(0.938)DT(0.052)EADAVSGQLPDPTTNPSAGK 231.2 2.2538999999999999e-35 590340000.0 659020.0 559230.0 523400.0 465910.0 476420.0 658290.0 635830.0 619650.0 758330.0 703610.0 True False 655471.9095440059 577843.6324883257 597090.1705256456 524894.1582291711 537089.2630374252 612783.9617479779 605072.4737935249 665891.4295189446 571449.7326013944 658705.0074091716 0.9950917363177758 0.8772419003783029 0.9064606520514087 0.7968577015888989 0.8153714591451381 0.9302858713010077 0.9185788281364446 1.010909924820579 0.8675351275209355 1.0 19.329272991825054 2.3692446357211217 2.7161518618795104 0.9574633625899008 0.875596530955631 0.21432708664625 0.06306378128872403 0.387723506567583 5.835737254099446 0.025009364151808773 0.019791654347819026 234.0155064090642 -2.3692446357211217 -0.08186683163426989 EEGVIDSSDKEIVAEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 EEGVIDSSDKEIVAEAER 18 1 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 168.79 1.8102e-11 403290000.0 470720.0 366890.0 324510.0 314340.0 323940.0 489340.0 428630.0 410340.0 588410.0 465310.0 False True 468185.69582190807 379101.7118603114 370198.18730851595 354135.41176999366 365191.8388571919 455513.07758245745 407895.52937438944 440961.6544643005 443404.23979004746 435613.5174280671 1.074773112152608 0.8702707714365464 0.8498317258248231 0.8129578114583463 0.8383390878532507 1.0456816865369114 0.9363702296996449 1.0122772522482995 1.017884482575238 1.0 18.73268919714145 2.739700939310341 24.999025333285093 0.9984383022667459 0.881754323224306 0.38003376180991977 0.07188985900103713 110.94886949159878 2432323.8171851956 0.022881927497633257 0.023049611031970826 549.1625833032464 -2.739700939310341 -0.11668397904243988 EEGWWVVIGDAK ddPTM_BT-474_Trastuzumab_2h_R1 4 EEGWWVVIGDAK 12 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;; 180.88 4.3904e-05 229628000.0 534991.0 526469.0 456243.0 444527.0 449089.0 591495.0 537983.0 538989.0 720938.0 597223.0 False True 532110.667899088 543992.2024077683 520478.04866475385 500804.0726216202 506277.8221909539 550606.3428794611 511958.70699536277 579211.0961106853 543272.4899742653 559107.7168316653 0.9517140470076798 0.9729649332877159 0.9309083616555736 0.8957201940612832 0.9055103461277798 0.9847947476018047 0.9156709728431489 1.0359561828138257 0.9716776814544172 1.0 19.092766731687917 1.744455600145913 24.99999999999987 1.0034716056965738 0.9369903092574704 0.5007264836734433 0.03009999418750078 0.9693959356765822 4125.614450718028 0.014179921276959676 0.007863525416959057 55.52078528528667 -1.744455600145913 -0.06648129643910339 EEHDKEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EEHDKEER 8 1 Q9Y6I3 Q9Y6I3 EPN1 Epsin-1 0 ; 171.56 0.00017343 103144000.0 231565.0 199815.0 174597.0 160616.0 164845.0 135407.0 216861.0 189087.0 299747.0 245517.0 False True 230318.27976928986 206465.72148428165 199178.73997567085 180949.96913167043 185837.0336371358 126046.63280379254 206370.60494053026 203197.63210433096 225878.368254019 229847.8948623212 1.0020465051779153 0.8982711005813411 0.8665676059159856 0.7872596320277782 0.8085217998122285 0.5483915042132295 0.897857276718354 0.8840526132555891 0.9827297673938674 1.0 17.810319927254145 -0.42548218839949303 7.039574345886101 1.000010283945871 0.8470284029451972 0.1177985804057442 0.11985261584670397 0.0 0.0 0.1192054189385315 0.028096986695206314 0.3754203511682775 0.42548218839949303 -0.1529818810006739 EEHETDEKR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEHETDEKR 9 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9JDJ7;C9J5L1 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 ;; 182.65 2.9916e-05 473920000.0 500217.0 455108.0 398862.0 385834.0 402550.0 386626.0 508870.0 419783.0 648920.0 492948.0 False True 497523.88725133316 470255.9946614045 455018.30262934585 434680.54483954824 453812.3563992178 359899.4546397088 484254.0140278227 451109.3390748827 489002.3610825061 461487.63660598395 1.0780871420746572 1.0190002014353137 0.9859815659977006 0.9419115711016902 0.983368394734875 0.7798680313227748 1.049332583618652 0.977511212201851 1.059621801959592 1.0 18.815932472587043 EEHGGLIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEHGGLIR 8 0 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ;;; 150.4 0.00070074 3202070000.0 4931010.0 5095880.0 4488180.0 4457540.0 4210320.0 4625010.0 4583200.0 4238130.0 5664480.0 4592400.0 False True 4904461.990046714 5265493.28527549 5120076.7320401035 5021864.10695813 4746479.295478207 4305293.9448024705 4361493.106475757 4554400.781388075 4268544.804143244 4299309.100248555 1.1407558460412102 1.224730104883847 1.1909068672787677 1.1680630514953676 1.1040097803630355 1.0013920479812837 1.0144637207461096 1.059333180097419 0.9928443628062166 1.0 22.0356734064109 3.046169421775987 2.3398332733247695 1.0206365461981606 1.187610318363109 0.8963953342553443 0.026782819976426415 0.08819690290860324 0.9782318204293946 0.008675143207434262 0.010420618469001837 1112.1655073893662 -3.046169421775987 0.16697377216494846 EEHGGLIRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 11 EEHGGLIRSPR 11 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR 146.27 2.1711e-05 69267485000.0 8988016.0 11620813.0 10658722.0 12627968.0 12016195.0 11726519.0 11932022.0 10368533.0 14326257.0 12257315.0 True False 8939625.520518448 12007604.735775197 12159377.410327548 14226667.454025282 13546386.207682261 10915892.342786513 11354824.51110951 11142285.582803763 10795742.924358604 11475042.662684664 0.7790494365296732 1.046410465629235 1.0596367933226298 1.2397921186200502 1.1805085702847393 0.9512724844399547 0.9895235115799537 0.971001669478495 0.9408019858143923 1.0 23.451996181609154 2.6844211626560375 24.999080931537552 0.9705326449574939 1.0701131794907657 0.13491107152287585 0.11351292871400483 639.123920918964 295117.0051851558 0.03875078181145587 0.03653462014084417 483.5274817394066 -2.6844211626560375 0.09958053453327176 EEHLCTQR ddPTM_BT-474_Trastuzumab_2h_R1 6 EEHLCTQR 8 0 P06753-2;A0A087WWU8;P06753-5;P06753-7;J3KN67 P06753-2;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;;;;; 154.49 0.0004242 7186937000.0 2557410.0 2906310.0 2714620.0 2679220.0 2424400.0 2854390.0 2892600.0 2438270.0 3151510.0 2837320.0 False True 2543641.1887149652 3003044.771448504 3096814.900099972 3018408.977293381 2733132.969455377 2657072.737811319 2752673.8871949213 2620226.088684187 2374862.588570436 2656239.8084481363 0.957609768750904 1.1305623693679159 1.1658642003069875 1.1363465631730125 1.028948124624397 1.000313574610445 1.0363047336464417 0.9864418417157185 0.8940693460798292 1.0 21.340953970090755 3.0424132550272547 3.713265321627462 0.9886305525246326 1.1044717322096729 0.4234432092102408 0.06223844244058044 0.22392978601540606 6.524045595099087 0.0193248577056144 0.022852062317275174 1102.5879834870661 -3.0424132550272547 0.11584117968504026 EEHLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEHLDK 6 0 Q8N3L3;H7BY59 Q8N3L3 TXLNB Beta-taxilin 0 67.741 0.097975 449710000.0 796200.0 808140.0 713400.0 652670.0 734480.0 731800.0 854450.0 746120.0 1122600.0 842150.0 False True 791913.3476661361 835038.4513690533 813840.5190160394 735297.9550802378 828011.674395969 681212.3884719049 813116.9891840224 801799.2631205907 845950.2720693167 788403.2659991113 1.0044521399370112 1.059151436049473 1.032264266415351 0.9326419445363721 1.050238767525479 0.8640405460632284 1.0313465509983553 1.0169913008979017 1.0729918412974588 1.0 19.588574227265397 -0.8561599499933791 4.676231710571754 0.9999999726071779 1.0061164283478279 0.0010067249125141897 0.06021392782993354 1.6703290522524696e-08 3.92915082153622e-09 0.05604669205207209 0.013210272949572648 0.13926437999006971 0.8561599499933791 0.006116455740650006 EEHS(ph)KTPEER ddPTM_BT-474_Trastuzumab_2h_R1 3 EEHSKTPEER 10 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EEHS(0.562)KT(0.438)PEER;EEHS(0.5)KT(0.5)PEER;EEHS(0.5)KT(0.5)PEER 80.96 0.021151 49818000.0 97522.0 85806.0 72104.5 74131.0 70675.0 84733.0 84150.0 86670.6 123088.0 86708.0 True False 96996.95238771269 88662.00083917756 82256.18685645092 83515.97699917729 79675.04232645554 78875.6071500273 80079.34301578267 93138.4002763892 92754.61169469818 81174.22120554652 1.1949231042463642 1.0922433196454173 1.0133289317080687 1.0288485156845677 0.9815313426254524 0.9716829552365059 0.9865119963763934 1.147388898755769 1.142660937390803 1.0 16.308734017751473 -0.5136846734227167 6.549435763409742 0.9999996009913036 1.0587009810127 0.05646046811774341 0.07502313530845747 0.0 0.0 0.07778089172452496 0.01833313199504941 0.3064187429365501 0.5136846734227167 0.058701380021396354 EEHSKT(ph)PEER ddPTM_BT-474_Trastuzumab_2h_R1 5 EEHSKTPEER 10 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EEHS(0.001)KT(0.999)PEER;EEHS(0.034)KT(0.966)PEER;EEHS(0.024)KT(0.976)PEER;EEHS(0.003)KT(0.997)PEER;EEHS(0.003)KT(0.997)PEER 172.85 5.2620000000000015e-06 2430480000.0 1761077.0 1442946.0 1223890.0 1258154.0 1283108.0 1413908.0 1536503.0 1456764.0 2115510.0 1465759.0 True False 1751595.5571060474 1490973.585330725 1396203.073757418 1417436.1673985624 1446504.1982230463 1316167.8679414263 1462176.479878538 1565475.1269777052 1594170.9068816674 1372213.0057205844 1.2764749713082915 1.0865467526652512 1.017482758097192 1.0329563715614474 1.0541396941967107 0.959157115152303 1.0655608668500496 1.1408397387660918 1.1617517836048545 1.0 20.388073014715797 4.728101053175081 3.9226584562019005 1.059334165812738 1.294773317773917 0.5682755557393366 0.05766751021983667 0.18583507994826567 5.850217144675109 0.015287763187924432 0.12328638909766199 53468.87581937704 -4.728101053175081 0.23543915196117893 EEHYFCK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEHYFCK 7 0 Q9BQ69 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 0 ; 96.964 0.012345 755760000.0 1132290.0 1321800.0 1282420.0 1135490.0 1122870.0 1688560.0 1418740.0 1113100.0 1828150.0 1457810.0 False True 1126193.8764492448 1365795.3139550253 1462973.5890055357 1279242.9175755864 1265860.838728081 1571833.82164269 1350110.1260868844 1196165.1742072727 1377626.9284549456 1364771.3177060655 0.8251887051247337 1.0007503061030627 1.0719551107393805 0.9373313323478714 0.9275259688603105 1.1517195600832668 0.9892574005410489 0.8764583184659909 1.0094196079461049 1.0 20.380227801457874 4.740925093344978 24.205614827292116 0.9899063755947103 0.8251886178354999 0.32837636846298224 0.07282999008272062 180.37230784258819 1846320.2593154989 0.018304500425841513 0.1223848316785627 55071.27018663212 -4.740925093344978 -0.16471775775921038 EEIDSILNKVEER ddPTM_BT-474_Trastuzumab_2h_R1 5 EEIDSILNKVEER 13 1 P52788;H7C2R7 P52788 SMS Spermine synthase 0 ;;;; 251.84 8.7775e-24 857876000.0 1268265.0 1270927.0 1111367.0 1101851.0 1147801.0 1572861.0 1600540.0 1465513.0 2177850.0 1661470.0 False True 1261436.8021574891 1313229.036903406 1267837.8134248666 1241345.2236246706 1293966.6538004696 1464132.8211865409 1523115.7655434422 1574877.021784227 1641148.0491948712 1555433.5621439691 0.8109872596671744 0.844284879061813 0.8151025182183365 0.7980702318867497 0.8319009472940134 0.9413020631806468 0.9792226441636113 1.012500347243027 1.055106491937049 1.0 20.568885343102014 2.5106135222200825 1.6295387091289883 1.019722869864804 0.8160204009214121 0.9575111271770089 0.01924578220710376 0.07071878676813885 0.38008324368556234 0.009008361538553337 0.007200327306491426 324.0511165678886 -2.5106135222200825 -0.20370246894339183 EEIFGPVLSVYVYPDDKYK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEIFGPVLSVYVYPDDKYK 19 1 P30038-2;P30038 P30038-2 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 0 199.56 6.2757e-16 109620000.0 462930.0 338030.0 396010.0 306510.0 365930.0 755970.0 420190.0 399190.0 695580.0 494490.0 False True 460437.6363163579 349281.1242065499 451764.76581937505 345314.1345728216 412529.0164629629 703711.5732619651 399863.8044183205 428979.5848457469 524163.62929447304 462931.2248458122 0.9946134795070588 0.7544989524586172 0.9758787948897671 0.7459296673881415 0.8911237659554361 1.5201212091414857 0.8637650323792752 0.9266594297859828 1.1322710613635005 1.0 18.820438350548844 2.9691365221518526 24.99830050589406 1.067599547723615 0.8612619400219875 0.2579020264001546 0.18181312086935972 1015.3352341100463 822385.1535016429 0.055937783608445917 0.059396755747820454 931.4006188435682 -2.9691365221518526 -0.20633760770162757 EEILQPPEPHPVPPILTPS(ph)PPSAFPTVTTVWQDNDRYHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEILQPPEPHPVPPILTPSPPSAFPTVTTVWQDNDRYHPK 40 1 Q05209;Q05209-2;Q05209-3 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 EEILQPPEPHPVPPILT(0.007)PS(0.985)PPS(0.007)AFPTVTTVWQDNDRYHPK 99.603 3.6152e-05 357270000.0 300800.0 221700.0 229730.0 236000.0 229840.0 264690.0 274150.0 259340.0 327520.0 307640.0 True False 299180.52622202196 229079.15047951968 262073.98715104404 265877.57580237475 259108.7616315891 246392.60331323938 260888.3171452977 278693.2677018366 246807.0845431526 288006.15181614517 1.038799082364776 0.7953967268926853 0.9099596848832053 0.9231663078228389 0.8996639828617156 0.8555115984832481 0.9058428630782904 0.9676642875314218 0.8569507386797318 1.0 18.135740102423348 -4.999996216549236 0.382310933184196 2.346920618725853 0.9038661825250504 0.16192209480866826 0.06272681309161965 1064.8262239945807 7.900124605984657 1190.0400814975283 0.03880654156232876 1.000008711755277e-05 4.999996216549236 -1.4430544362008026 EEIQETQTPTHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEIQETQTPTHSR 13 0 Q9BYG3;H7BZL0 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 0 ; 239.38 8.2854e-17 606530000.0 592300.0 651120.0 635110.0 621060.0 585350.0 691630.0 604140.0 580100.0 741200.0 671010.0 False True 589111.1226107171 672792.1355896479 724527.9675249185 699686.1323212835 659890.8528587315 643819.2460218958 574915.44016108 623390.0076881129 558541.1915711549 628185.5673194367 0.9377979266931327 1.0710085850277558 1.1533661472303312 1.1138207700424423 1.0504712097646338 1.0248870389830356 0.9152000142479102 0.9923660143104096 0.8891340722050254 1.0 19.260831271619832 2.5018516355568567 2.7381149835395204 0.9520323080465911 1.0734272186859728 0.4436538321249772 0.06055153479501749 0.2537745057820163 3.838260589022793 0.022816891847193113 0.019757027203973765 317.57889667120946 -2.5018516355568567 0.12139491063938168 EEISATQIIVCTPEKWDIITR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEISATQIIVCTPEKWDIITR 21 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 152.81 4.4727e-08 281880000.0 185706.0 194856.0 207386.0 201460.0 191137.0 215930.0 220580.0 205230.0 294450.0 223630.0 False True 184706.17952987622 201341.66416706078 236584.14616857335 226964.81534384072 215477.16399224265 201003.26734454546 209909.70270257082 220545.30473682372 221886.74292785555 209357.74194072475 0.8822514888518997 0.9617110993873178 1.1300472768547398 1.0841004170177813 1.029229499682178 0.9600947425266715 1.002636447817642 1.0534375404147533 1.0598449375264953 1.0 17.675610743615916 4.472426577190078 24.52771140195503 1.0394032672167108 0.9021163506212985 0.5493594139193092 0.04530052012810615 64.86323944861559 338886.0141381463 0.011851156875783128 0.03273589893610189 29677.44967354861 -4.472426577190078 -0.13728691659541237 EEIVDKYDLFVGSQATDFGEALVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEIVDKYDLFVGSQATDFGEALVR 24 1 O43852;O43852-3;O43852-15;O43852-6;O43852-5;H0Y875;O43852-9;O43852-2;O43852-4;O43852-8 O43852;O43852-2 CALU Calumenin 0 ;; 261.69 4.0988999999999995e-44 3930200000.0 3044010.0 3402460.0 2869910.0 2721230.0 3010820.0 3456210.0 3454750.0 3430670.0 4129520.0 3183860.0 False True 3027621.388381302 3515708.8242694987 3273968.3822951 3065737.438986005 3394230.080471727 3217290.3377432167 3287630.544073379 3686684.0159892724 3111855.128733019 2980663.328960316 1.0157542312695091 1.1795055114445991 1.0984026107494307 1.0285420058008912 1.1387499042555964 1.079387365384013 1.1029862085162554 1.2368669685600566 1.0440142965822523 1.0 21.507201998974146 1.9798936206730307 24.91151864372312 1.1324408679351685 1.0936915922902126 0.0 0.07496961929712459 2435.9280686537795 3018075.392642386 0.029391658839565873 0.019251086491168547 95.4758691667433 -1.9798936206730307 -0.038749275644955894 EEIVELMR ddPTM_BT-474_Trastuzumab_2h_R1 6 EEIVELMR 8 0 P42574;A8MVM1;C9JXR7 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 0 ;;;;; 159.04 0.00084097 680003000.0 884525.0 1047410.0 914719.0 960400.0 933326.0 1020602.0 987248.0 889934.0 1131956.0 1027445.0 False True 879762.8156799659 1082272.408677285 1043503.4843199232 1081986.5415279702 1052179.5338433885 950050.185978687 939491.0425863984 956345.3940732869 853000.6112332939 961872.5804600795 0.9146355073965835 1.1251723260056092 1.084866650238432 1.124875127441972 1.0938866074549227 0.9877089806679616 0.9767312861096679 0.9942537228952417 0.8868124828189714 1.0 19.875486266858676 2.646448627454955 4.510989764862189 0.9694310801748964 1.075726204352129 0.3838268386050908 0.06305833309019332 0.23260634094259974 8.199520158263924 0.02038310992086895 0.01921276764762421 443.0458036536421 -2.646448627454955 0.10629512417723253 EEIVT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEIVTPK 7 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 EEIVT(1)PK 105.35 0.08884199999999999 438770000.0 1924200.0 1374200.0 1162200.0 1217700.0 1262400.0 1725300.0 1381800.0 1615800.0 2348300.0 1519200.0 True False 1913840.3209987194 1419939.4162785579 1325827.6579765086 1371860.6951464075 1423159.1571689788 1606034.0719193462 1314957.055011391 1736379.2008661511 1769592.9306078553 1422243.3553474422 1.345648980396315 0.9983800669131468 0.932208720112192 0.9645752184310774 1.0006439135877088 1.1292259273920147 0.9245654409755761 1.2208734843707307 1.2442265410869566 1.0 20.439736910170744 1.6899927969592865 9.952813570386144 1.1730303475890107 1.0351750771949582 0.1275889994366689 0.1315408255687421 0.19356510319337888 31.154299339472306 0.061126399733401116 0.032956681887637874 48.97706961532834 -1.6899927969592865 -0.13785527039405254 EEIVYLPCIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEIVYLPCIYR 11 0 Q13228;Q13228-4;Q13228-3;H0Y532;F2Z2W8;F8WCR4;C9JVL0 Q13228 SELENBP1 Selenium-binding protein 1 0 135.71 0.00026598 137260000.0 98165.0 118050.0 105160.0 122110.0 85296.0 126240.0 110140.0 97933.0 150000.0 106210.0 False True 97636.4905471569 121979.22288726813 119965.61393289434 137569.11347977965 96157.94001099904 117513.32593699559 104812.1074243409 105241.25775369756 113034.50989702255 99431.58686904417 0.9819464178495765 1.2267653240606549 1.2065141240368054 1.3835554456247823 0.9670763892931059 1.1818510559603748 1.0541127897554639 1.0584288259655856 1.1368068584271318 1.0 16.60141661142066 3.2152727863493764 24.998315384490866 1.0729054982231678 1.2021161594463985 0.2691787485978737 0.1072624120313948 315.7800549798457 338973.2276434229 0.030173241101057076 0.036084192420128655 1641.6205739423006 -3.2152727863493764 0.12921066122323066 EEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEK 36 2 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 169.27 4.7626e-18 42016000.0 89275.0 54871.0 46723.0 39189.0 46218.0 77776.0 77919.0 67892.0 146840.0 67760.0 False True 88794.35331938493 56697.34806478003 53301.192276403744 44150.32338186129 52103.58834445171 72399.52818501087 74149.76029051408 72958.44578859048 110653.2495551921 63435.498787745324 1.3997581010041418 0.8937794948927399 0.8402423452954806 0.6959876445456499 0.8213632641053222 1.1413093546763007 1.1689000907617766 1.1501201564239112 1.744342705106442 1.0 15.953002784466083 2.1860993051709405 1.4926185600790307 1.3153079989690277 0.9179456672293882 0.283771582766159 0.2500225729340099 0.506263939454242 2.1885236863889412 0.14850093326130387 0.08405867745639341 153.49679263013286 -2.1860993051709405 -0.39736233173963953 EEKDKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEKDKDDQEWESPSPPKPTVFISGVIAR 28 3 P51397 P51397 DAP Death-associated protein 1 1 EEKDKDDQEWES(0.048)PS(0.952)PPKPTVFISGVIAR 195.19 1.4983e-18 1171700000.0 1606900.0 762180.0 737430.0 739250.0 858050.0 1305800.0 1297300.0 1222600.0 2665700.0 1302800.0 True False 1598248.6289433744 787548.7005524613 841253.7341435346 832838.9742029901 967317.5814391959 1215533.1195225671 1234544.6428327367 1313836.6202370066 2008773.9535499553 1219654.188616804 1.3104112984320007 0.6457147508718117 0.6897477514487863 0.6828484516152101 0.7931080715069079 0.9966211167618663 1.01220875093523 1.0772206027734907 1.6470028736818285 1.0 20.21804072441715 1.9203555864976236 1.3510222892893708 1.2903919117431197 0.8116072955391951 0.3584134086792219 0.23817186795227907 0.4346480813655101 1.4729839435762637 0.1709114905064793 0.07550365758691105 83.24450716778773 -1.9203555864976236 -0.47878461620392465 EEKEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEKEEAR 7 1 O75400-3;O75400;O75400-2;F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 O75400-3;F8VU11 PRPF40A;PRPF40B Pre-mRNA-processing factor 40 homolog A;Pre-mRNA-processing factor 40 homolog B 0 68.22399999999999 0.057485 60630000.0 194040.0 166280.0 113360.0 118350.0 112850.0 106050.0 148590.0 153820.0 215790.0 174880.0 False True 192995.31019987084 171814.52928161746 129320.10265721656 133333.09786530095 127220.77858564584 98719.01311484765 141402.13403107703 165298.8294821335 162611.44593785692 163719.0086776994 1.1788204177305115 1.0494476522262304 0.7898905796076421 0.8144020596153452 0.7770678531049212 0.6029783218953392 0.8636879441986127 1.0096495869184265 0.9932349777292944 1.0 17.32086231080579 1.7495652336317806 5.979438155636849 1.0002689663544724 0.855950143928922 0.14177822616753022 0.14772218670158052 0.3243001407484595 30.434706986653698 0.08058384801684045 0.042517203918295464 56.17786545364752 -1.7495652336317806 -0.14431882242555039 EEKESEDKPEIEDVGS(ph)DEEEEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 EEKESEDKPEIEDVGSDEEEEKK 23 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 EEKESEDKPEIEDVGS(1)DEEEEKK;EEKESEDKPEIEDVGS(1)DEEEEKK;EEKESEDKPEIEDVGS(1)DEEEEKK;EEKESEDKPEIEDVGS(1)DEEEEKK 247.36 6.221e-37 2282700000.0 2855210.0 1202490.0 818946.0 840068.0 935073.0 1903390.0 1875790.0 1838050.0 4672140.0 1641940.0 True False 2839837.866603651 1242514.152729446 934246.4783937625 946420.5226658873 1054149.003938109 1771813.1293981127 1785050.8714863313 1975214.6244287842 3520753.7004685057 1537149.9834644417 1.847469600984024 0.8083233035783907 0.6077783485305382 0.6156982290907206 0.6857814886497016 1.1526611901623192 1.1612730642348696 1.2849849693762665 2.290442532181148 1.0 20.551826508486652 1.7672823849716242 1.8374037007902713 1.6339391232655411 0.9078042990428172 0.2442280188211745 0.45501600169480344 0.4165625174761828 2.7758582236904887 0.3165165419137048 0.13163012413672417 58.5170447323852 -1.7672823849716242 -0.7261348242227239 EEKS(ph)ESRQER ddPTM_BT-474_Trastuzumab_2h_R1 1 EEKSESRQER 10 2 Q05682-5;Q05682-4;C9J813;E9PGZ1;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 Q05682-5 CALD1 Caldesmon 1 EEKS(0.5)ES(0.5)RQER 58.674 0.086286 36711000.0 30859.0 38891.0 36303.0 37063.0 40698.0 29703.0 34730.0 42293.0 40008.0 44614.0 True False 30692.858572757228 40185.463424894064 41414.14684866734 41755.17199984499 45880.64906405507 27649.701523341097 33049.977218516105 45449.11841950244 30148.564479733897 41766.69632403295 0.7348644081072859 0.9621412982518076 0.9915590768149227 0.9997240786271782 1.0984983994928732 0.6620035568250391 0.7912997705662164 1.0881664680131904 0.721832635404925 1.0 15.350065412793308 2.778517737362693 24.995648941854203 0.8720702863496583 0.9618769473197027 0.10852157289361986 0.14449931519158046 1466.3294676858181 917276.9949559491 0.04534400404430445 0.048094028548679356 600.5065341666312 -2.778517737362693 0.08980666097004442 EELAQFHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EELAQFHR 8 0 E7EMD0;P16435;H0Y4R2 E7EMD0;P16435 POR NADPH--cytochrome P450 reductase 0 ;; 188.98 0.00019413 854670000.0 668106.0 1097900.0 1198820.0 885560.0 1223480.0 1287100.0 954570.0 811240.0 1106060.0 1088020.0 False True 664508.9915295548 1134442.9378054354 1367603.4356697632 997671.8052014877 1379282.925865892 1198125.8065075022 908393.8022884809 871778.8481932514 833486.3334446731 1018581.6320992142 0.6523865840384885 1.1137476880153832 1.3426547196332643 0.9794716238357518 1.3541211449329806 1.176268812189615 0.8918222886234016 0.8558752884602737 0.8182813308020539 1.0 19.95813017604463 2.2265453051950828 21.574195672898906 0.8773948917501513 1.1202702633217627 0.22313444709836106 0.19111685998710182 58.164222839075485 104433.27594785426 0.0710213196680791 0.05302284877876947 168.47881731370754 -2.2265453051950828 0.24287537157161143 EELDEDDIISDPDSHFPAWR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELDEDDIISDPDSHFPAWR 20 0 Q8IXW5-2;Q8IXW5 Q8IXW5-2 RPAP2 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 0 ; 187.39 2.932e-17 68699000.0 67361.0 84556.0 71904.0 64881.0 74220.0 76259.0 74953.0 64880.0 85570.0 75642.0 False True 66998.33586051068 87370.39534481871 82027.45819922804 73094.92794760129 83671.47706359453 70987.39482437696 71327.23704173438 69721.67505396444 64482.420079254785 70814.46279962567 0.9461109102823672 1.2337930966452315 1.1583432953707535 1.0322033813124918 1.1815591583367462 1.0024420438694932 1.0072410948531747 0.9845682971746414 0.9105826342524431 1.0 16.11175641893156 2.598685001614876 5.6155108961464135 0.9798259098023118 1.11523780904206 0.40529859076079366 0.0786660257515732 0.22525913793880808 9.453616412515306 0.024767983865447644 0.023230892938115255 396.9035666850846 -2.598685001614876 0.13541189923974828 EELDFQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EELDFQK 7 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;; 117.02 0.012389 722630000.0 1876380.0 1735070.0 1533220.0 1396210.0 1425500.0 1914900.0 1792500.0 1720930.0 2343510.0 1792980.0 False True 1866277.778565416 1792820.7560780372 1749084.049012857 1572970.0428433653 1607028.975399539 1782527.47018974 1705789.926985029 1849354.5353054716 1765983.3619251451 1678550.4813525914 1.111838934424869 1.0680767578901564 1.042020522137308 0.9371002304177659 0.9573909115349217 1.0619445110482246 1.0162279573566877 1.101756876454049 1.0520883235528904 1.0 20.678784495160283 -0.13055366760921985 7.964596582388125 1.000000001002884 1.0386278366024952 0.04540964605125741 0.05325203208941804 0.0 0.0 0.05566772625062339 0.013121008908350731 0.7403657716624462 0.13055366760921985 0.03862783559961125 EELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR 36 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ; 245.24 3.4598e-50 211823000.0 279220.0 220220.0 219645.0 179479.0 205545.0 273250.0 257380.0 259040.0 313750.0 269110.0 False True 277716.71054425836 227549.88957419904 250569.10681143557 202201.02299760343 231719.93738933592 254360.8706613118 244929.54611291923 278370.8801784673 236430.51653460562 251935.1694033376 1.1023340298298947 0.9032081154572795 0.9945777217403299 0.8025914900110198 0.9197601825029916 1.009628275654086 0.9721927537667332 1.1049306090838285 0.9384577671094833 1.0 17.942693006521406 2.6875636769604228 6.349096590205442 1.0169278412640854 0.9371475912901676 0.10993673919383473 0.08147241374362775 0.3959892373992341 38.1513723364552 0.02631951546808822 0.024955730578884144 487.03893036785604 -2.6875636769604228 -0.07978024997391786 EELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRR ddPTM_BT-474_Trastuzumab_2h_R1 9 EELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRR 37 2 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;;; 324.13 9.725899999999992e-111 7078006500.0 552922.0 538768.0 524483.0 488893.0 514238.0 631595.0 610100.0 601716.0 822598.0 643610.0 False True 549945.1293874094 556700.5671878663 598325.6475120409 550786.803672672 579723.1611725775 587934.3242647073 580587.1321916694 646619.1033719374 619879.7451484738 602534.2587777572 0.9127201007673407 0.9239318081550008 0.9930151502517824 0.9141169911067711 0.9621414097657252 0.9757691213398124 0.9635753050281198 1.073165706268066 1.0287875521068328 1.0 19.200683746590453 1.8666992869569503 5.467350736891723 1.0394666715902614 0.9489718487160129 0.6312683020844903 0.02972857496180587 0.13528308813048368 5.285237249562305 0.013353816107386318 0.00791706185213632 73.56975113558767 -1.8666992869569503 -0.09049482287424848 EELEEVIK ddPTM_BT-474_Trastuzumab_2h_R1 2 EELEEVIK 8 0 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 ; 109.21 0.0085176 112427000.0 134402.0 130803.0 110486.0 118637.0 118998.0 148235.0 127646.0 139580.0 191114.0 143784.0 False True 133678.39456546586 135156.69878291685 126041.4684384723 133656.43203587423 134151.68994359497 137987.8633576564 121471.27532492674 149996.16837287846 144016.51549639713 134607.58202032445 0.9930970645121737 1.00407938954367 0.9363623248164523 0.9929339048352669 0.9966131768367948 1.0251121169149413 0.9024103509012275 1.114321839242536 1.0698989858881205 1.0 17.03840014913281 1.7107350961754522 12.6897748445063 1.0684209937240747 0.9810535959362764 0.44086796096736525 0.042407355409581196 0.09790492389265937 35.33390709091757 0.018754769690392182 0.010285630140135461 51.37301992744118 -1.7107350961754522 -0.08736739778779834 EELEEVIKDI ddPTM_BT-474_Trastuzumab_2h_R1 4 EELEEVIKDI 10 1 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 ;;; 156.92 8.2308e-05 624900000.0 1515130.0 1428150.0 1292560.0 1209080.0 1249550.0 1626390.0 1632270.0 1546320.0 2201720.0 1622970.0 False True 1506972.7084267684 1475685.1094150925 1474541.212867077 1362149.404030234 1408672.7858368955 1513961.487410253 1553310.8642230735 1661714.25045386 1659135.607536484 1519390.6651054749 0.9918270152871813 0.971234813603815 0.9704819482780721 0.8965103151635295 0.9271300779902492 0.996426740126875 1.022324870026264 1.0936714885888188 1.091974332632423 1.0 20.53506143201897 2.2298643668552445 2.185069117656773 1.0696405182058855 0.9516347068641973 0.6350571801366687 0.03593428728336964 0.18261892696866297 1.7684857876031472 0.01712220388459037 0.011444243540449142 169.77133621347963 -2.2298643668552445 -0.1180058113416882 EELEFEVPFR ddPTM_BT-474_Trastuzumab_2h_R1 6 EELEFEVPFR 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ;;;;; 234.05 1.0303e-11 2022220000.0 1232750.0 1408960.0 1203630.0 1201470.0 1217690.0 1346930.0 1285410.0 1247010.0 1550350.0 1297600.0 False True 1226113.0109713993 1455856.381865694 1373090.6418604946 1353575.9788105048 1372755.6036859094 1253819.899432171 1223229.8075569472 1340068.2183884738 1168287.0161256595 1214786.0570687475 1.0093242376604021 1.1984467333932396 1.1303147857769562 1.1142505060328518 1.1300389856287445 1.0321322772321007 1.006950812811084 1.1031310497768056 0.961722444316418 1.0 20.21227082423852 2.735217282182173 24.087974055144546 1.032225749076641 1.121674323172461 0.42102848152269046 0.05512884113475084 180.3687713511392 1299509.1600126778 0.016865204922100755 0.01652108721826065 543.5221934555258 -2.735217282182173 0.08944857409581997 EELEQASQAHGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELEQASQAHGAR 13 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;F5H4J1;F5H6Y5 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 234.52 8.5851e-09 0.0 802560.0 917470.0 895750.0 909170.0 929230.0 922550.0 979760.0 855630.0 1288750.0 959040.0 False True 798239.1061327985 948007.4343276734 1021863.8140014261 1024270.8287807005 1047561.9325222832 858776.2899491064 932365.2657533345 919481.4554011041 971154.8308652531 897833.2461245462 0.8890727867099587 1.0558836381028456 1.1381443251430619 1.140825240323764 1.1667666986537129 0.9564986523454915 1.0384615069422347 1.024111614679008 1.0816650364165017 1.0 19.776087993647458 -1.7007737754149703 9.068417398265114 0.9998898401830898 1.0569549541563745 0.038375756489799406 0.08123600016856111 0.00018438617848080498 6.08416272323969e-06 0.0801600481462163 0.018857529103253123 0.019917105535509076 1.7007737754149703 0.05706511397328473 EELGDEWLKPELFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EELGDEWLKPELFR 14 1 G3V158;E9PPM8;Q9Y315 G3V158 DERA Deoxyribose-phosphate aldolase 0 141.85 8.720700000000001e-06 196940000.0 311170.0 288960.0 242860.0 255600.0 231710.0 326250.0 315440.0 267750.0 431070.0 302960.0 False True 309494.6952942371 298577.8589199915 277052.5770230379 287958.93379274185 261216.89504723102 303697.1054098925 300180.96210218006 287730.8646069509 324838.57454206387 283624.8334228945 1.0912115542180674 1.0527211433379726 0.9768276412169553 1.0152811032713243 0.9209944414766656 1.0707705025147414 1.0583733394550816 1.014476980504504 1.1453107635949433 1.0 18.113624331018304 EELGFRPEYSASQLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EELGFRPEYSASQLK 15 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;; 195.1 2.1979e-08 1821350000.0 1657930.0 1540850.0 1403280.0 1292500.0 1372700.0 1881820.0 1753760.0 1816640.0 2350640.0 1807080.0 False True 1649003.8890933383 1592136.2607865038 1600849.6264715847 1456130.3674769881 1547505.2083696597 1751734.2127277951 1668923.9287862007 1952206.9015110065 1771356.2689622503 1691750.6072809743 0.9747322578140878 0.9411175937719489 0.9462680962441101 0.8607240105072691 0.9147360146995014 1.0354565295786877 0.9865070664691759 1.1539566725196242 1.0470551991166241 1.0 20.690085475750237 2.4400634163928068 1.8538606132712572 1.0736727790281098 0.9264767624405803 0.5380639943911417 0.05223742380692444 0.2327946255154822 1.6280529012339835 0.02304428608020753 0.01784662730724825 275.463090969707 -2.4400634163928068 -0.14719601658752945 EELGLIEQAYDNPHEALSR ddPTM_BT-474_Trastuzumab_2h_R1 5 EELGLIEQAYDNPHEALSR 19 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;;; 330.1 3.044599999999999e-75 2071240000.0 1933095.0 2360850.0 2068440.0 2188060.0 2156750.0 2320800.0 2196580.0 1944780.0 2516940.0 2359050.0 False True 1922687.4313070439 2439429.46508604 2359658.372797218 2465068.171653153 2431399.3284412203 2160368.558575565 2090323.0336495256 2089909.3589927412 1896673.8622680807 2208493.409315683 0.8705878057851221 1.1045672379171438 1.068447097394044 1.116176376735021 1.100931213190537 0.9782091943144944 0.9464927650824309 0.9463054542871895 0.8588089302271353 1.0 21.07463109635392 2.5265632840009933 3.8448396347944116 0.9367610901051833 1.0591978764274113 0.3534104378671008 0.07290283864927528 0.24005174893600334 7.294899787082302 0.02473489705397134 0.022290389984216633 336.17335158231197 -2.5265632840009933 0.12243678632222799 EELKPDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EELKPDQK 8 1 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 ; 87.913 0.013668 1530260000.0 3082300.0 2320100.0 2063800.0 1914050.0 1983660.0 2850700.0 2824700.0 2670400.0 4533800.0 2746800.0 False True 3065705.2392757274 2397323.1259699333 2354365.101128823 2156368.5337480344 2236267.3429260263 2653637.818825993 2688058.4695981117 2869678.8080164427 3416505.7398074716 2571496.8723462042 1.1921870379249628 0.9322675643710362 0.9155621095431189 0.8385654895938444 0.8696364234290053 1.0319428529597412 1.0453283060560592 1.1159565616730385 1.328605831315008 1.0 21.29417696829809 2.015619098968865 1.6879929609681694 1.165461301821476 0.9451460645327522 0.33330091805671247 0.11801952355553152 0.3953168144318628 2.107476223542856 0.0735988342967767 0.036825995638239954 103.66188431525238 -2.015619098968865 -0.2203152372887237 EELLDGEDYNFLQGASDQES(ph)NGSANFYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELLDGEDYNFLQGASDQESNGSANFYIK 29 0 Q05BQ5 Q05BQ5 MBTD1 MBT domain-containing protein 1 1 EELLDGEDYNFLQGAS(0.335)DQES(0.647)NGS(0.018)ANFYIK 183.47 5.696e-18 26188000.0 17860.0 19275.0 19321.0 16153.0 17454.0 19557.0 21895.0 16990.0 24603.0 21106.0 True False 17763.843744432535 19916.55672301644 22041.228858857456 18197.968143795602 19676.663442036886 18205.07062222608 20835.85520297754 18257.8800734719 18539.92031330966 19758.99701024429 0.8990255798521887 1.0079740744274854 1.1155034259800696 0.9209965533352046 0.9958331099415261 0.9213560087481892 1.0544996384267349 0.9240286874888378 0.9383027035075422 1.0 14.270222095446133 EELLDS(ph)RTPAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELLDSRTPAGR 12 1 Q9ULH4 Q9ULH4 LRFN2 Leucine-rich repeat and fibronectin type-III domain-containing protein 2 1 EELLDS(0.5)RT(0.5)PAGR;EELLDS(0.5)RT(0.5)PAGR 53.569 0.08517000000000001 449910000.0 306900.0 491480.0 356760.0 369360.0 403890.0 435020.0 443860.0 358920.0 521130.0 394090.0 True False 305247.6844997953 507838.6146940661 406988.7069864902 416120.9381286661 455322.9974564153 404948.09132693155 422388.7960901402 385704.4329588308 392704.49428423657 368938.83880257583 0.827366632069706 1.3764845586393182 1.1031332681248973 1.127885964728528 1.2341422197083045 1.0976022276245758 1.144874845546327 1.0454427465827918 1.064416247307533 1.0 18.493022146360428 1.6034297856637563 1.3924286025559898 1.0177398606645576 1.1445159447397544 0.09129608201101669 0.12992717709267634 0.8342428638972051 3.1240001209759805 0.10195443389379769 0.03626729245444955 40.126361892969804 -1.6034297856637563 0.1267760840751968 EELLNALYCEFINR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELLNALYCEFINR 14 0 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ; 99.011 0.0054683 59413000.0 89293.0 92423.0 80169.0 101478.0 91889.0 99776.0 109011.0 91847.0 126546.0 105382.0 False True 88812.25640938488 95499.24368411659 91456.0983585602 114325.10439522633 103590.51948122651 92878.71996744024 103737.72146753973 98701.08952961593 95360.43392952411 98656.43053793057 0.900217613034754 0.9679981645737716 0.9270160886613259 1.158820603703796 1.0500128467692629 0.9414360469055388 1.051504913586505 1.0004526718779694 0.9665911629841579 1.0 16.59012547006061 EELLPHLLPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELLPHLLPLLK 12 0 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 0 108.37 0.00066486 0.0 382080.0 374680.0 325380.0 321280.0 312960.0 400770.0 433420.0 391260.0 507220.0 434290.0 False True 380022.9237330783 387150.9973011569 371190.67574634025 361954.0150584197 352813.60094075033 373065.7132111034 412453.8187748125 420457.8079780226 382222.4273997859 406573.24038562435 0.9346973336775343 0.9522294111977317 0.9129737003701359 0.890255381084883 0.8677737880784177 0.9175855077359741 1.0144637615195988 1.0341502248874743 0.9401071920947323 1.0 18.633155738233818 2.257045580522584 8.947026840761412 1.0042259379688683 0.9112462197685172 0.6355280378784387 0.03119411785923279 0.1294649227858672 54.28664923499715 0.01175998904961595 0.00960486356020082 180.73638043679867 -2.257045580522584 -0.09297971820035111 EELMESR ddPTM_BT-474_Trastuzumab_2h_R1 3 EELMESR 7 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ;; 138.55 0.0064555 1151300000.0 1419430.0 1768630.0 1584520.0 1721140.0 1715530.0 1801370.0 1709120.0 1569080.0 1965420.0 1761370.0 False True 1411787.9465934997 1827497.7803905867 1807606.6431052648 1939036.1475275417 1933992.5767570478 1676845.5318688657 1626443.3361275636 1686172.7172267947 1481068.576278708 1648957.858615275 0.8561698161158948 1.1082743993986857 1.0962115457718344 1.1759161323600242 1.172857490961675 1.0169123019778137 0.9863462111114119 1.022568714183376 0.8981846131122154 1.0 20.65312309851579 2.5059595278990914 12.844000758564004 0.985874728826572 1.0899320484802442 0.2355542507725923 0.088615071258647 2.8842316910120425 1283.3961311679475 0.029296542899169775 0.027303765665641414 320.5970544726233 -2.5059595278990914 0.10405731965367215 EELMS(ph)SDLEETAGSTSIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 EELMS(0.5)S(0.5)DLEETAGSTSIPK 174.95 2.2626e-12 433700000.0 469300.0 434560.0 419650.0 343900.0 381620.0 574260.0 465720.0 477280.0 712240.0 520020.0 True False 466773.34094413184 449024.0669029327 478733.07233681175 387437.7047391388 430217.0449610473 534562.7578626347 443191.34437682986 512897.0571787325 536717.9955270358 486831.8783884792 0.95879781432813 0.9223390801549425 0.9833642651371224 0.7958347058570671 0.8837076289768874 1.0980438660511618 0.9103581011249529 1.053540410863263 1.102470933710608 1.0 18.893064115140813 2.752958265341275 24.949850156694968 1.0273682300530957 0.9074260246320999 0.44704295767008995 0.06885063701617486 770.553618156889 1335300.4664744565 0.021255592395237555 0.022448514898149394 566.1848774142843 -2.752958265341275 -0.11994220542099587 EELMS(ph)SDLEETAGSTSIPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 EELMS(0.5)S(0.5)DLEETAGSTSIPKR;EELMS(0.559)S(0.441)DLEETAGSTSIPKR 191.4 9.034e-18 308380000.0 162297.0 232870.0 207799.0 232466.0 206174.0 257200.0 257340.0 227510.0 441130.0 284220.0 True False 161423.21098489172 240620.93717711256 237055.29297871317 261896.1717647243 232429.0368109607 239420.369383676 244891.48106573365 244487.95147237126 332419.42233915714 266080.83626701566 0.6066698122629973 0.9043151718586988 0.8909145668079043 0.9842729579439085 0.8735279100585623 0.8998031302916324 0.9203649706662144 0.9188484029981939 1.2493174142220818 1.0 18.021505082436434 5.188972465309696 1.303455247255404 0.9597696801607963 3.356159525303324e-14 0.5271502498607374 0.10212959076758325 3.1591390546058444 2.110280658436232 0.027463694464584396 5.366584120270235 154515.64720176667 -5.188972465309696 -0.9597696801607628 EELMSS(ph)DLEETAGSTSIPK ddPTM_BT-474_Trastuzumab_2h_R1 12 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 EELMS(0.017)S(0.983)DLEETAGSTSIPK;EELMS(0.068)S(0.932)DLEETAGSTSIPK;EELMS(0.023)S(0.977)DLEETAGSTSIPK;EELMS(0.018)S(0.982)DLEETAGSTSIPK;EELMS(0.273)S(0.727)DLEETAGSTSIPK;EELMS(0.027)S(0.973)DLEETAGSTSIPK;EELMS(0.124)S(0.876)DLEETAGSTSIPK;EELMS(0.062)S(0.938)DLEETAGSTSIPK;EELMS(0.16)S(0.84)DLEETAGSTSIPK;EELMS(0.197)S(0.803)DLEETAGSTSIPK;EELMS(0.046)S(0.954)DLEETAGSTSIPK;EELMS(0.15)S(0.85)DLEETAGSTSIPK 363.78 6.949699999999997e-93 11705060000.0 6254730.0 5632470.0 5393140.0 4637490.0 4886160.0 6864380.0 6125250.0 6312000.0 8709130.0 6653900.0 True False 6221055.228645833 5819943.359049986 6152447.233986781 5224595.758507439 5508383.513460691 6389861.567612429 5828948.256772692 6783033.491686554 6562881.607863039 6229242.405309608 0.9986856866162735 0.9342939285986449 0.9876718280769794 0.8387208939010239 0.8842782404430947 1.025784702513088 0.9357395133321963 1.0889018359447549 1.0535601572141498 1.0 22.57062528400786 2.041658286685594 1.7066656787231251 1.0525249643980936 0.9336488375767499 0.371466179433959 0.05775558104202774 0.3575674995018691 1.9590726364541864 0.03546178129839893 0.01821449782546179 110.06729328812021 -2.041658286685594 -0.11887612682134374 EELMSS(ph)DLEETAGSTSIPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 EELMS(0.005)S(0.995)DLEETAGSTSIPKR;EELMS(0.02)S(0.98)DLEETAGSTSIPKR 237.22 8.3406e-30 321740000.0 145682.0 198230.0 182829.0 196494.0 197118.0 237870.0 230122.0 189944.0 356750.0 251740.0 True False 144897.6642987919 204827.96571743453 208569.73402184423 221370.1202530162 222219.80889007845 221426.6067857506 218990.11970859076 204118.5857960884 268833.7427050858 235673.73767454285 0.6148231267876376 0.8691166344562955 0.8849935341962951 0.9393075462600783 0.9429129061336321 0.9395472273263343 0.9292088370534032 0.8661066260932687 1.1407030132323683 1.0 17.84643147512215 5.25546379038465 1.0844863305389676 0.9508280913907629 3.320144883598596e-14 0.689554267763071 0.0695443603833847 2.6563601310507123 1.1790777495378968 0.019615263366957292 3.7948353122043064 180079.2985769921 -5.25546379038465 -0.9508280913907297 EELNGAMEHTNSNESDSSPGRS(ph)PMQAVHPVHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELNGAMEHTNSNESDSSPGRSPMQAVHPVHVK 33 1 A0A3B3IUB6;Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IST0;H0Y882;A0A0B4J2F3;A0A3B3IRW5;A0A3B3IT66;A0A3B3IS87 A0A3B3IUB6 FOXP1 Forkhead box protein P1 1 EELNGAMEHTNSNES(0.006)DS(0.173)S(0.173)PGRS(0.648)PMQAVHPVHVK 192.24 1.3706e-20 225570000.0 65678.0 58826.0 61804.0 55536.0 55532.0 73379.0 59159.0 39584.0 85862.0 62102.0 True False 65324.39694551179 60783.98784893205 70505.4659900019 62566.85190576561 62603.671036048574 68306.48244558615 56297.25316067364 42537.9590834792 64702.46059185433 58138.59719180284 1.1235977491854947 1.0455014531637545 1.212713574037571 1.0761672095278405 1.0768005087827486 1.1748904470508434 0.9683283718550262 0.731664696744296 1.1129002713704443 1.0 15.82720864110194 2.0830437420729604 5.679771094360813 0.9022326471702278 1.1142947907718788 0.36077189489104755 0.10217768074071687 0.16897633050457597 8.894731796379613 0.03796081967372825 0.027686856351464905 121.07200709476695 -2.0830437420729604 0.212062143601651 EELRHT(ph)PELPLAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELRHTPELPLAPR 14 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 EELRHT(1)PELPLAPR;EELRHT(1)PELPLAPR 106.16 0.0014045 203718000.0 180675.0 188729.0 164316.0 160528.0 141531.0 170793.0 166029.0 164333.0 151969.0 161720.0 True False 179702.26587487958 195010.73067591025 187450.26453972477 180850.8283406932 159554.1339300403 158986.48191347648 157997.54297762772 176596.36292606554 114518.27623027099 151398.89114454226 1.186945720119679 1.2880591740248035 1.2381217796421233 1.1945320535276103 1.0538659347096018 1.0501165544316322 1.0435845453239525 1.1664310193491905 0.756401023577769 1.0 17.20799511340558 2.995385836481023 0.522656208871671 0.968821218863607 1.2828370764643258 0.5434737317756433 0.09818455736744945 0.9158007395522398 0.5182179286243408 0.08311646154995517 0.13457512529743845 989.4317365559214 -2.995385836481023 0.3140158576007188 EELRHT(ph)PELPLAPRPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELRHTPELPLAPRPLK 17 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 EELRHT(1)PELPLAPRPLK 102.48 0.045068 277090000.0 295120.0 286170.0 271880.0 292950.0 277850.0 365540.0 382390.0 342850.0 434890.0 402780.0 True False 293531.1067109141 295694.9954565822 310158.34077667596 330037.4399631597 313232.55055402505 340271.08018860413 363892.3348283437 368435.2079570242 327717.1867274414 377074.23556269275 0.7784438156398817 0.7841824435852226 0.8225392018996979 0.8752585269334513 0.8306919991141816 0.9023981171262769 0.9650416297611046 0.9770893187841995 0.8691052207223922 1.0 18.524489052930775 3.276032039783822 0.4612197355090704 0.9773173025437685 0.7429627877340745 0.7586232559845858 0.03706855888001612 0.7163266192689499 0.27958948106194464 0.03298394639791588 0.07947951931890061 1888.130639528462 -3.276032039783822 -0.23435451480969394 EELRQEWEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELRQEWEAK 10 1 Q14320;B0S8I6 Q14320 FAM50A Protein FAM50A 0 124.67 0.00039166 292950000.0 203850.0 214110.0 185490.0 198380.0 199230.0 268340.0 260480.0 211160.0 343230.0 247830.0 False True 202752.4942498644 221236.52191777207 211605.37969201748 223494.88765964008 224600.7595712734 249790.2874044155 247879.5872697692 226917.83144875348 258645.56554636697 232013.27722206226 0.873883153056831 0.9535511267573896 0.9120399583403489 0.9632849047933186 0.9680513212884181 1.0766206589346983 1.0683853537938741 0.978038128531619 1.1147877769892225 1.0 17.82384784200661 3.130007227273356 1.8182766372467838 1.041705624128108 0.9196636147394052 0.6454737258627115 0.04274603438040738 0.22350554983621393 1.519452641010395 0.013969741885591334 0.018116172117618682 1348.9853314254005 -3.130007227273356 -0.1220420093887028 EELRSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EELRSPK 7 1 P50454;E9PKH2;H0YEP8 P50454 SERPINH1 Serpin H1 0 58.815 0.097845 79041000.0 54477.0 80905.0 57803.0 67276.0 62920.0 69638.0 75269.0 61849.0 109060.0 75511.0 False True 54183.7018849637 83597.87401689478 65941.15996731725 75793.13470203629 70932.48904394181 64824.088970219316 71627.95091449724 66464.48644285837 82183.62432912854 70691.82333178048 0.7664776395802012 1.182567800303323 0.9327975550698873 1.0721626792155812 1.0034044349235667 0.9169955719769468 1.0132423742746484 0.940200483030664 1.1625619549153963 1.0 16.1092557329025 1.2524032891153105 24.997639022117205 1.081281037589157 0.9850511869639903 0.12300238696960297 0.10867107366290117 410.3864914161754 741099.9032491433 0.06611191051782452 0.023868478673410177 17.881472911150148 -1.2524032891153105 -0.09622985062516676 EELSHS(ph)PEPCTK ddPTM_BT-474_Trastuzumab_2h_R1 2 EELSHSPEPCTK 12 0 P41229-4;P41229-3;P41229-2;P41229-5;P41229 P41229-4 KDM5C Lysine-specific demethylase 5C 1 EELSHS(1)PEPCTK;EELSHS(1)PEPCTK 261.98 2.2755000000000003e-21 1726670000.0 2104640.0 1818090.0 1720890.0 1620110.0 1616320.0 2300490.0 2087560.0 1897860.0 2629750.0 2121490.0 True False 2093308.852087486 1878604.0265913852 1963176.3537559737 1825215.7598863787 1822148.7713207875 2141462.541070969 1986576.7475463694 2039487.9503378097 1981683.349344636 1986094.691901034 1.0539824010525045 0.945878378433829 0.9884606014816325 0.9189973505942627 0.9174531198090449 1.078227815523348 1.0002427153384486 1.0268835411798363 0.9977788860851465 1.0 20.921502977829604 2.7458730941591836 24.99830407906306 1.0209428781028016 0.9626473292180452 0.30068406787260993 0.04237686377927777 701.9607861210601 2399709.3940156302 0.012845081568224602 0.013397431395533467 557.0229566360213 -2.7458730941591836 -0.05829554888475641 EELSNVLAAMR ddPTM_BT-474_Trastuzumab_2h_R1 1 EELSNVLAAMR 11 0 Q9Y3U8 Q9Y3U8 RPL36 60S ribosomal protein L36 0 88.134 0.030722000000000006 38396000.0 37332.0 46230.0 38782.0 37494.0 33911.0 37266.0 39222.0 33951.0 45837.0 38797.0 False True 37131.008659975116 47768.73760337486 44242.16850081306 42240.73655565356 38229.36484375576 34689.88913472808 37324.6820174097 36484.59601968476 34541.08553433218 36320.94224421718 1.0223030121385936 1.3151844267195556 1.2180897787104368 1.1629857031690554 1.052543311974304 0.9550933150764065 1.0276352900330479 1.0045057689959471 0.9509964059324927 1.0 15.148514009310071 3.1854551891704674 2.690745543758211 0.9928478399451888 1.1973724406187538 0.6206277193006025 0.0706613956991147 0.16389385024333203 2.4222071275438797 0.020601250518462327 0.026610844901862767 1532.693053788049 -3.1854551891704674 0.20452460067356504 EELSSGDSLS(ph)PDPWKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EELSSGDSLSPDPWKR 16 1 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 EELSSGDS(0.002)LS(0.998)PDPWKR;EELSSGDS(0.015)LS(0.985)PDPWKR;EELS(0.003)S(0.003)GDS(0.243)LS(0.751)PDPWKR;EELSSGDSLS(1)PDPWKR 205.06 1.4446e-11 887870000.0 616425.0 588488.0 493706.0 470789.0 465627.0 608301.0 596086.0 532771.0 801480.0 625574.0 True False 613106.2362912557 608075.4673314914 563215.5134305194 530390.8391289159 524921.8384625472 566250.5836565294 567251.0429103483 572529.0773763206 603965.9932817713 585649.3317391527 1.0468828410860926 1.0382927707366143 0.9616941109759086 0.9056457685247581 0.8963074147181757 0.9668765129040335 0.9685848035134462 0.9775970813048314 1.0312758173704821 1.0 19.159677557529132 1.3842941339581198 4.504531149796536 1.0150575033923674 0.9667536226207033 0.13637523854840516 0.04559543336899025 0.4583756258151318 14.330551721003594 0.03705516401556583 0.012966532977088248 24.226692887473735 -1.3842941339581198 -0.04830388077166414 EELTLEGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EELTLEGIR 9 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3KTB5;J3KTN0 P60842;J3KTN0 EIF4A1 Eukaryotic initiation factor 4A-I 0 ; 185.47 9.9611e-05 234090000.0 379840.0 433240.0 398280.0 385870.0 383580.0 376070.0 388540.0 371620.0 499360.0 427350.0 False True 377794.98364419094 447660.1315008893 454354.36208818154 434721.102435857 432426.639343217 350073.1660735576 369744.83583306224 399352.1714481238 376299.4190811816 400076.15712725784 0.9443076697120453 1.1189372911280384 1.1356696818692413 1.0865958760386192 1.0808608102223622 0.8750163183611186 0.92418613118065 0.9981903803407516 0.940569470030894 1.0 18.609915127066255 2.7619868900085436 23.86104968886832 0.9497578964489372 1.0800176321280108 0.5338151906089007 0.05853861334481958 342.01219907952424 348358.89875020983 0.018009696086105184 0.019088890536987157 578.0785967583606 -2.7619868900085436 0.13025973567907367 EELVAAVEDVRK ddPTM_BT-474_Trastuzumab_2h_R1 2 EELVAAVEDVRK 12 1 P35221-2;P35221;G3XAM7;P26232;P26232-5;P26232-2;P26232-3;E5RIB1;E5RJL0;E5RHV7;E5RG03;E5RIE0;E5RGY6;C9IZ88 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 0 ; 163.51 9.5887e-05 446840000.0 256028.0 235686.0 206101.0 194176.0 228890.0 303970.0 265068.0 265890.0 328710.0 262517.0 False True 254649.5736953848 243530.66603480466 235118.22933799372 218758.6616906864 258037.7847626804 282957.2693684133 252245.6481819069 285732.06196206267 247703.82498833517 245762.94030788913 1.0361593712069144 0.9909169614007388 0.9566870783830962 0.8901206236246519 1.0499458723899278 1.151342301707196 1.0263778902787226 1.1626328265933856 1.007897385496831 1.0 17.90690785611566 3.017313317960847 21.169841088181734 1.0846094156183546 0.969332361597473 0.3667108654816218 0.06192049487229745 36.32337939632026 44412.36094096596 0.017273112871570014 0.020634291087593175 1040.6706778426649 -3.017313317960847 -0.11527705402088151 EELVER ddPTM_BT-474_Trastuzumab_2h_R1 2 EELVER 6 0 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ; 108.98 0.06966900000000001 736200000.0 647480.0 752500.0 664690.0 667730.0 672760.0 723320.0 756880.0 651650.0 905620.0 784460.0 False True 643994.0396217915 777546.5076041444 758272.5744109498 752264.5495361012 758431.9982390695 673318.5909121324 720266.8228376186 700279.4320116518 682442.0856862771 734395.0911900047 0.8769040634221444 1.0587577680349383 1.0325131302038721 1.0243322137640394 1.0327302120308506 0.9168342748875068 0.9807620332408639 0.9535459052114955 0.9292574172581362 1.0 19.48619689002472 2.7492441874014046 24.878268102586603 0.9553448160398673 1.0106286262250714 0.1823955987133299 0.05114767410530781 1013.0707112232554 2359083.4296810916 0.01504669506478898 0.01580704448224533 561.3635208424193 -2.7492441874014046 0.05528381018520412 EELYQNLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EELYQNLTR 9 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 86.624 0.032598 168410000.0 111480.0 139600.0 146620.0 127760.0 124880.0 144470.0 140100.0 134050.0 174660.0 155080.0 False True 110879.80406659248 144246.5016100179 167262.82155611413 143934.4029004722 140782.72777824933 134483.1289457996 133322.82776602666 144053.49169210755 131617.38332409307 145182.66162933223 0.7637262109829697 0.9935518469712007 1.1520853776820474 0.9914021501269417 0.9696938063973752 0.9263029581944865 0.9183109489094154 0.9922224188167346 0.9065640610731269 1.0 17.147509644885066 3.0086038415658765 5.031620822222487 0.9491186112980659 0.9885365766324422 0.010664273174258887 0.09222639350715517 0.7709828937726254 56.61212237657197 0.028400943036516073 0.03280661029601727 1020.0086190730234 -3.0086038415658765 0.03941796533437636 EEMAAEAGEAVASPMDDGFVS(ph)LDSPSYVLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEMAAEAGEAVASPMDDGFVSLDSPSYVLYR 31 0 P49354;P49354-2;E9PN85 P49354 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 1 EEMAAEAGEAVAS(0.124)PMDDGFVS(0.86)LDS(0.015)PSYVLYR 96.44 0.00022894 20881000.0 9487.3 9799.7 8919.4 6205.5 9648.0 11710.0 8480.9 9636.0 9116.2 9437.1 True False 9436.221430938118 10125.877090456253 10175.173991185402 6991.115663735753 10876.61561182375 10900.515262374982 8070.646466815813 10355.087250616543 6869.634660821588 8834.816198492204 1.0680721838388163 1.1461333052049671 1.1517131497225659 0.7913142171456711 1.231108306891547 1.233813473588202 0.9135047391470568 1.1720772699701207 0.777563959054858 1.0 13.108984405598333 1.2432739094716536 24.999925112458474 0.888781971170747 1.0876770450407272 0.24195994432905188 0.14137177468396836 147.68450804186583 783371.6258075316 0.09741191630074887 0.0329668127052356 17.50950664799365 -1.2432739094716536 0.19889507386998018 EEMHLEDSANFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEMHLEDSANFIK 13 0 P16615-5;P16615-2;P16615-3;P16615;H7C5W9;P16615-4 P16615-5 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 0 180.54 1.2814e-05 58325000.0 103750.0 165370.0 136970.0 108880.0 183940.0 204740.0 133350.0 132700.0 194550.0 173750.0 False True 103191.42152770863 170874.24048172397 156254.18543541766 122664.19683628199 207363.6687022039 190586.80570611905 126899.35105353071 142602.74783694628 146605.75933643844 162661.12624514088 0.6343951004752817 1.0504921761343604 0.9606117272293594 0.7541088621962391 1.2748200721891805 1.1716801064004214 0.7801455331268587 0.8766860966032823 0.9012956120535772 1.0 17.31150998251948 4.748042130799497 23.987762331471448 0.9656669069794244 0.6343947872286895 0.3031147383767657 0.1541599859940767 989.4969157359333 2503284.155413422 0.038585496382619794 0.4766759157980819 55981.19060745778 -4.748042130799497 -0.3312721197507349 EEMQDAHVILNDITEECRPPSSLITR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEMQDAHVILNDITEECRPPSSLITR 26 1 Q9H0C8;E9PC05 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C 0 ;;; 170.16 4.4277e-12 247879000.0 179800.0 205605.0 187184.0 188565.0 194135.0 208957.0 193742.0 183348.0 232976.0 204611.0 False True 178831.97677765807 212448.438134153 213537.88016750524 212437.30966599498 218856.94152170434 194512.29442186916 184369.95929368713 197030.358782279 175562.18651845827 191552.55080370975 0.9335922493713651 1.1090869698303103 1.114774401445192 1.1090288736676055 1.1425425587048137 1.0154513401452552 0.9625032844517802 1.028596893936341 0.9165223108846129 1.0 17.5473807119311 2.534318251599353 6.301366180215641 0.9844146597566323 1.0864214986795837 0.40698573055332743 0.05969485021125539 0.22798494464795233 19.524385491394778 0.019399929923595412 0.01805732500678163 342.23013736756866 -2.534318251599353 0.10200683892295137 EEMQSNVEVVHTYR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEMQSNVEVVHTYR 14 0 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 ;; 285.65 1.1287999999999999e-33 5692700000.0 2216370.0 2259240.0 2037810.0 1790230.0 1829460.0 3208090.0 2891200.0 1822150.0 2509830.0 2697180.0 False True 2204437.310181855 2334437.437660582 2324715.935037952 2016872.9344435837 2062430.8869410339 2986322.289331561 2751341.6105434396 1958128.0856902201 1891316.0264989634 2525043.663228024 0.8730293825349917 0.9245136912508791 0.9206636577785066 0.7987477459558885 0.8167901874236961 1.1826814454027448 1.0896213996656658 0.7754828616258235 0.749023097715902 1.0 21.267876904585794 -2.1012270899701515 2.263427788932222 1.1596698830032846 0.9057832347798496 0.04602202822407364 0.1315456027381937 14895427.822087044 4280687.262615052 12239058.590731092 0.033869709506414276 0.007920870446288187 2.1012270899701515 -0.253886648223435 EENAVHSTEPVVQENGDEAGEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EENAVHSTEPVVQENGDEAGEGR 23 0 Q00341;A0A024R4E5;Q00341-2;H0Y394 Q00341 HDLBP Vigilin 0 173.68 2.0549e-19 0.0 72573.0 70080.0 66756.0 61194.0 73348.0 82756.0 68755.0 69248.0 65233.0 73474.0 False True 72182.27503161828 72412.57043574538 76154.66454644622 68941.1541256378 82688.43303234335 77035.27250666986 65429.057980393714 74415.63739421898 49157.201227416524 68784.82641574378 1.0493924138928534 1.0527404692144613 1.107143370343893 1.0022727063226002 1.202131884909682 1.1199457281618972 0.9512135363246046 1.0818612370182037 0.7146518176887512 1.0 16.06980272835637 1.2634664597658005 24.988195177583055 0.8573258810297331 1.069811002324035 0.47192626361169754 0.0903372318849394 153.96685203691612 154476.4545426081 0.05664708338777499 0.020666761007004684 18.342835013206543 -1.2634664597658005 0.21248512129430197 EENEGVYNGSWGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EENEGVYNGSWGGR 14 0 P49419;P49419-2;A0A1B0GW77;A0A1B0GW82;A0A1B0GTG2;A0A1B0GUA1;A0A1B0GV49;A0A1B0GTJ4;A0A1B0GTY9;P49419-4;A0A1B0GUY0;A0A0J9YWF7;H0YHM6;F8WDY6;A0A0J9YWM6;F8VVF2;F8WD33;A0A1B0GW65;A0A0J9YWK1 P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase 0 ;;; 294.41 3.3166999999999997e-43 3027600000.0 1082760.0 1351170.0 1224820.0 1266810.0 1252570.0 1555190.0 1283640.0 1166760.0 1419580.0 1317420.0 False True 1076930.540465946 1396142.8766504852 1397264.0096737128 1427188.0161110451 1412077.3649359527 1447683.37582348 1221545.4292190033 1253829.5558872316 1069743.5303974357 1233341.1276999924 0.8731814064080308 1.1320005838563862 1.1329096048871843 1.1571721594759026 1.1449203575731544 1.173789913682037 0.9904359805928256 1.0166121340860879 0.8673541377739967 1.0 20.23414045679752 1.901884123736795 2.1041032425462274 0.9513090558029947 1.1078671784487983 0.3308657746089423 0.09005176055758264 0.3530577717154348 2.8878113745832064 0.05395559183685542 0.026139826948402844 79.77817987525582 -1.901884123736795 0.1565581226458036 EENGTWEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EENGTWEK 8 0 P55735;P55735-4;P55735-3;P55735-2;A8MXL6 P55735 SEC13 Protein SEC13 homolog 0 ;;; 144.5 0.0013597 1633540000.0 1137030.0 1047980.0 948330.0 907180.0 937660.0 1136130.0 1145250.0 1081730.0 1402320.0 1127330.0 False True 1130908.3568159095 1082861.3807827127 1081846.6209678722 1022028.8949847382 1057065.4430537594 1057592.0072623482 1089849.8822201442 1162454.1855136408 1056737.0261252846 1055382.8342442294 1.071562204842724 1.0260365676291874 1.0250750588932913 0.9683963599015932 1.001594311329438 1.0020932432729028 1.0326583367263094 1.101452617756557 1.0012831285834065 1.0 20.00933499278675 2.000231831757206 24.723299307435 1.0509021867178598 1.0141719574200638 0.0 0.036825554391214814 12.421705702099004 1324627.1973767066 0.014082991863647955 0.010289413821632756 100.05339548513925 -2.000231831757206 -0.03673022929779601 EENKGGEDKLK ddPTM_BT-474_Trastuzumab_2h_R1 5 EENKGGEDKLK 11 2 P62258;P62258-2;B4DJF2;I3L3T1;K7EIT4 P62258 YWHAE 14-3-3 protein epsilon 0 ;;;; 91.937 0.0081912 6463140000.0 8494538.0 5340161.0 5089650.0 4477773.0 4366269.0 8061204.0 8295817.0 7359713.0 14891200.0 7927062.0 False True 8448804.351239888 5517905.030689507 5806228.47996915 5044658.602683589 4922287.47624607 7503951.941513082 7894516.638611543 7908932.155925367 11221463.291856956 7421150.116460773 1.1384764111562284 0.7435377190996718 0.7823893047373368 0.6797677615352485 0.6632782518882077 1.0111575461691102 1.0637861402507949 1.0657286312511924 1.5120922115517847 1.0 22.823211359773033 2.1990767964503166 1.5224214909897331 1.202772442545856 0.7952684950115165 0.46986640251913314 0.17945031806527958 0.34448403868001237 1.5572679193727954 0.10346600326026117 0.059640857171286255 158.15276766565566 -2.1990767964503166 -0.4075039475343394 EENLIPYSPDVQIHAER ddPTM_BT-474_Trastuzumab_2h_R1 1 EENLIPYSPDVQIHAER 17 0 Q8N766-4;Q8N766-3;Q8N766-2;Q8N766 Q8N766-4 EMC1 ER membrane protein complex subunit 1 0 108.45 0.00065523 105850000.0 80705.0 96864.0 116850.0 96485.0 127150.0 135100.0 107940.0 106920.0 148730.0 103160.0 False True 80270.49324716849 100088.05968447553 133301.4643215926 108699.99110717002 143341.79882290526 125760.8549911921 102718.52982915714 114898.91332875895 112077.48437989454 96576.24048028052 0.8311619177551084 1.0363631798745787 1.3802718314429605 1.1255355413153092 1.4842346120542307 1.302192489226899 1.06360041888492 1.1897223660535807 1.160507841499371 1.0 16.5593806829231 4.490986807896578 4.481350071122663 1.2204009792942798 0.863823635875644 0.4290584911622286 0.1381297070286421 0.1684079192457188 8.362975743234479 0.03323899462697401 0.12694185094473742 30973.252136206447 -4.490986807896578 -0.3565773434186358 EENPES(ph)DGEPVVEDGTSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EENPESDGEPVVEDGTSVK 19 0 Q13439-5;Q13439-3;Q13439-4;Q13439;H0Y6I0;E7EVX2;A0A087WTW2 Q13439-5 GOLGA4 Golgin subfamily A member 4 1 EENPES(1)DGEPVVEDGTSVK;EENPES(1)DGEPVVEDGTSVK 308.76 1.9124e-61 1159140000.0 2187010.0 1689930.0 1623570.0 1392480.0 1488100.0 2133700.0 2025930.0 2026530.0 2723800.0 2085710.0 True False 2175235.381159652 1746178.2984657423 1852154.5436765808 1568767.8252258084 1677600.7143402705 1986202.3411895393 1927928.0260958362 2177759.95911083 2052555.9870500662 1952598.2021338332 1.1140209894603597 0.8942844956824647 0.9485589721697553 0.803425826937376 0.8591632997034204 1.0172099610759566 0.9873654620745645 1.115313922101811 1.0511921934615107 1.0 20.89696367706084 2.3766216101949778 2.2559240925526094 1.0586364887360777 0.9188231983303978 0.2893464821824616 0.08314815256442777 0.3392912581957368 3.538510931831992 0.034987758751208284 0.02689198889855757 238.02447185898282 -2.3766216101949778 -0.1398132904056799 EENSGLLQELEELRK ddPTM_BT-474_Trastuzumab_2h_R1 4 EENSGLLQELEELRK 15 1 A0A3B3ISJ8;J3KP58;P30622-2;P30622-1;P30622;F5H0N7;A0A3B3ITA2 A0A3B3ISJ8;J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 0 ;;; 245.39 6.8512e-18 318941000.0 284042.0 268871.0 257906.0 238100.0 247389.0 301464.0 287941.0 290976.0 401159.0 317353.0 False True 282512.7494320328 277820.2086990481 294216.9230408618 268243.4355870568 278892.52276051685 280624.5032499238 274012.1937885619 312690.10666618956 302298.7397051978 297099.25984042755 0.9509035787695023 0.9351090569807065 0.9902984046439097 0.9028748026202783 0.9387183357855231 0.9445479716127454 0.9222917416076172 1.0524768955470838 1.017500817294405 1.0 18.18058548544698 1.7453552152514 11.618068241665942 1.0254535487842449 0.9409927267152828 0.7106192263238797 0.024151133544536723 0.045495436760193235 39.16497526630921 0.010888064586267251 0.0059565729658260435 55.6359124775419 -1.7453552152514 -0.0844608220689621 EENVGLHQTLDQTLNELNCI ddPTM_BT-474_Trastuzumab_2h_R1 1 EENVGLHQTLDQTLNELNCI 20 0 P67936;A0A2R8YE05;K7ENT6;A0A5F9UN72;K7EPB9;P67936-2 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain 0 163.7 4.4726e-11 21070000.0 40002.0 39855.0 31892.0 40592.0 35658.0 47778.0 40969.0 38801.0 47644.0 43185.0 False True 39786.63367663999 41181.549582143714 36382.116389766685 45730.94303800845 40198.83493847546 44475.21931731444 38987.17295322161 41696.52764748575 35902.774596891664 40428.89632746139 0.9841137723469057 1.0186167153460255 0.8999037741491368 1.131144977780302 0.9943094813392257 1.1000849233449042 0.964339284392968 1.0313545863274858 0.8880473586538311 1.0 15.303099199418476 1.2607425508146626 24.99982539323054 0.9440236081339597 1.015912609979986 0.15518276531822905 0.06668708340472207 349.1331141794769 393487.18717716966 0.04156297990655806 0.015150658219939972 18.22814819802464 -1.2607425508146626 0.07188900184602631 EENWSFLDWDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EENWSFLDWDSR 12 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 0 128.36 0.00058933 25668000.0 57936.0 62650.0 65551.0 57870.0 60530.0 63516.0 62228.0 57766.0 77582.0 65114.0 False True 57624.07901329475 64735.26737727526 74780.01102049409 65196.33606645526 68238.13671058165 59125.28842058152 59217.793905955084 62076.79224980447 58462.95564553873 60958.36877309995 0.9453021820151366 1.0619586560498975 1.226739043802849 1.0695223211948128 1.1194219609874823 0.9699289795738868 0.9714464986157412 1.018347332765211 0.9590636498681636 1.0 15.895536676828739 2.7343800684262054 24.796031181533476 0.9866331893295209 1.0903918071379755 0.3632752527258396 0.06646992166174594 360.2913107196166 2136982.159468727 0.021764082089632673 0.021219766557779664 542.4754246142079 -2.7343800684262054 0.10375861780845452 EEPCLLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEPCLLKR 8 1 Q60FE5;P21333-2;P21333;H0Y5F3;H7C2E7 Q60FE5 FLNA Filamin-A 0 ; 105.14 0.007128900000000001 651820000.0 314940.0 463830.0 399600.0 456780.0 425140.0 525860.0 573490.0 416790.0 739160.0 610450.0 False True 313244.3980331235 479268.3011588446 455860.20661453524 514608.3011652915 479279.05899779726 489508.53594129067 545748.0977554512 447892.9862167361 557003.9222365551 571490.5583674611 0.5481182382574227 0.838628554998246 0.7976688327393556 0.9004668469682836 0.8386473791744202 0.8565470221234048 0.9549555802189512 0.7837277093364448 0.9746511365432021 1.0 19.124370138215216 5.1801779624679325 1.2981807302653037 0.8819469258329151 8.74262488609125e-22 0.6880747972322034 0.06843887881317222 2.085257558592358 1.4082806413535733 0.01736610263809565 3.221521358669854 151418.15931599707 -5.1801779624679325 -0.8819469258329151 EEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEPDSENIPQELLSNLGHPESPPR 24 0 D6RF40;D6RAG5;D6R9R7;A0A0A0MTL5;Q13309-2;Q13309 D6RF40 SKP2 S-phase kinase-associated protein 2 1 EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLS(0.018)NLGHPES(0.981)PPR 196.9 1.2411e-24 410466000.0 390048.0 400380.0 380515.0 336774.0 354964.0 470744.0 453697.0 380494.0 473208.0 489132.0 True False 387948.0249064069 413706.40626517875 434088.20450432895 379409.5538697835 400166.56136353704 438202.575292182 431749.9428191506 408888.394389383 356592.22906233574 457915.17699302675 0.8472049942828487 0.9034564195531759 0.9479664058196074 0.8285585910500654 0.8738879632496455 0.9569514122019481 0.9428600852548842 0.8929347943311554 0.7787298761398468 1.0 18.804720856460104 EEPFFPPPEEFVFIHAVPVEER ddPTM_BT-474_Trastuzumab_2h_R1 8 EEPFFPPPEEFVFIHAVPVEER 22 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;;;;;; 213.72 5.5498999999999996e-24 3047702000.0 1383615.0 1699164.0 1522301.0 1563620.0 1445727.0 1609248.0 1612952.0 1497076.0 1756892.0 1565356.0 False True 1376165.7705740787 1755719.64657367 1736627.7487225048 1761574.1316784306 1629831.7639547163 1498004.4735223248 1534927.3496849996 1608795.4131178935 1323929.5077466655 1465453.6399113033 0.9390715155324676 1.198072459446711 1.1850444813986845 1.2020674579545554 1.1121687643789004 1.022212121028265 1.0474076476263698 1.0978139255331654 0.9034264010063099 1.0 20.482915897960304 2.8345620267755165 4.133748420511348 1.0292668784376635 1.1412881464563074 0.2986403163993473 0.08466725514619612 0.31001372695703683 9.416489817026175 0.026436479779974296 0.028053680713383898 683.2222901365935 -2.8345620267755165 0.11202126801864387 EEPGPRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEPGPRPR 8 1 Q8TE77;Q8TE77-3 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 ;;; 113.5 0.0025864 1049195000.0 1644350.0 1931220.0 1735240.0 1813080.0 1846070.0 1834430.0 1855260.0 1681530.0 2055760.0 1875480.0 False True 1635497.002304461 1995499.4902528583 1979546.7090235383 2042615.742100721 2081156.0719858482 1707620.1718837335 1765513.9860185483 1807014.3072363257 1549145.4937726872 1755785.2607207887 0.9314903359155967 1.1365282161177623 1.1274423776691749 1.1633630762239011 1.1853135565857795 0.97256777926403 1.0055409539625397 1.0291772847520695 0.882309202855894 1.0 20.743684977843518 2.7215652167286613 24.568830587631457 0.986113339609527 1.114430353720878 0.43535359558722486 0.07411280601852631 645.6739424815783 933395.6863317391 0.024043518748830022 0.022726681856860713 526.7023022956258 -2.7215652167286613 0.128317014111351 EEPGS(ph)DSGTTAVVALIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEPGSDSGTTAVVALIR 17 0 O15355 O15355 PPM1G Protein phosphatase 1G 1 EEPGS(0.991)DS(0.007)GT(0.002)T(0.001)AVVALIR 97.235 0.0022287 17509000.0 22341.0 22090.0 18414.0 17298.0 18008.0 21985.0 21885.0 22949.0 26912.0 25511.0 True False 22220.718538318455 22825.25229631301 21006.53114264278 19487.925026396093 20301.21205822162 20465.228697123297 20826.338941181246 24661.570912660754 20279.898202324483 23882.866138934074 0.9304041821887545 0.9557166281271019 0.8795649157199661 0.8159793264773483 0.8500324852186142 0.8569000294215394 0.8720200841903959 1.0326051642711855 0.8491400523015117 1.0 14.543688361725954 -0.7236655232208555 7.049058373071891 0.9999998726450301 0.8993006963453923 0.21221965233394746 0.06061164266595969 0.0 6.826517293019933e-11 0.06458626284803738 0.015223128143781342 0.188944596693866 0.7236655232208555 -0.10069917629963776 EEPGS(ph)PLSPAPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEPGSPLSPAPR 12 0 B2RBV5 B2RBV5 LOC93622 1 EEPGS(1)PLSPAPR;EEPGS(1)PLSPAPR;EEPGS(1)PLSPAPR 160.56 7.105e-05 1305200000.0 664960.0 811150.0 715570.0 736530.0 705090.0 757170.0 718110.0 702920.0 928320.0 800390.0 True False 661379.929244001 838148.6373994697 816316.036154062 829774.6224818778 794879.0321041478 704828.6200864612 683372.275853401 755375.4597554357 699547.9748506944 749308.4249516461 0.8826538007852784 1.118562943494939 1.0894259412694312 1.1073872851962452 1.0608168887937466 0.9406388565989295 0.9120039934123255 1.0080968458404576 0.9335914979146767 1.0 19.515200147138717 2.7454146671674517 23.722186811293355 0.9595134260804012 1.0606620522999395 0.31842456244579076 0.06733122487193371 301.1701129234617 1042363.01126932 0.02034540497556334 0.021117060941030538 556.4352917115478 -2.7454146671674517 0.10114862621953824 EEPLDPEEAEGPLSLVT(ph)TANHSPDFDHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEPLDPEEAEGPLSLVTTANHSPDFDHDR 29 0 A0A3B3IUB6;Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IST0;H0Y882;A0A0B4J2F3;A0A3B3IRW5;A0A3B3IT66 A0A3B3IUB6 FOXP1 Forkhead box protein P1 1 EEPLDPEEAEGPLS(0.054)LVT(0.315)T(0.315)ANHS(0.315)PDFDHDR;EEPLDPEEAEGPLS(0.002)LVT(0.333)T(0.333)ANHS(0.333)PDFDHDR 128.89 3.1068e-05 154992000.0 128253.0 134822.0 125801.0 121120.0 116868.0 132195.0 116628.0 89694.0 136692.0 118289.0 True False 127562.50009824788 139309.46876837994 143512.68731810592 136453.77958128648 131750.447069094 123056.67080355775 110986.25807777412 96387.42173690326 103006.08817895879 110739.694747692 1.151913055105351 1.257990362767217 1.2959462065078247 1.2322029593108519 1.1897309936538352 1.1112245801645797 1.0022265126397891 0.8703963105236221 0.9301640971076056 1.0 16.756812924655993 2.380696591104206 1.6075058882087612 0.9183010894587786 1.2368961000612193 0.8843215138591276 0.04720786577299774 0.11031837890606004 0.577379758886289 0.023641032365781762 0.016625968114690682 240.2683639145367 -2.380696591104206 0.31859501060244066 EEPLDPEEAEGPLSLVT(ph)TANHSPDFDHDRDYEDEPVNEDME ddPTM_BT-474_Trastuzumab_2h_R1 2 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 A0A3B3IUB6;Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IST0;H0Y882;A0A0B4J2F3;A0A3B3IRW5;A0A3B3IT66 A0A3B3IUB6 FOXP1 Forkhead box protein P1 1 EEPLDPEEAEGPLS(0.002)LVT(0.333)T(0.333)ANHS(0.333)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLS(0.069)LVT(0.309)T(0.309)ANHS(0.309)PDFDHDRDY(0.005)EDEPVNEDME 93.083 0.00026919 117230000.0 70237.0 76413.0 68295.0 76503.0 72783.0 80182.0 76855.0 58724.0 84945.0 74665.0 True False 69858.85179606423 78956.3605123661 77910.34236921839 86188.27195597067 82051.48363136072 74639.20706812554 73137.2300353889 63106.28307442987 64011.44295468395 69899.81577607746 0.9994139615454144 1.1295646438511524 1.1146001102320853 1.2330257383234446 1.1738440612520478 1.067802629226243 1.0463150613970489 0.9028104348170168 0.9157598234556614 1.0 16.09300103287134 2.0775066648820872 2.0601780196220423 0.9310854248841064 1.1317339908631132 0.6221220916788559 0.06260560431489538 0.20183923314855343 1.6424336744400339 0.034744584035512144 0.019579492540786655 119.53818704107911 -2.0775066648820872 0.20064856597900682 EEPLDPEEAEGPLSLVTT(ph)ANHSPDFDHDRDYEDEPVNEDME ddPTM_BT-474_Trastuzumab_2h_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 A0A3B3IUB6;Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IST0;H0Y882;A0A0B4J2F3;A0A3B3IRW5;A0A3B3IT66 A0A3B3IUB6 FOXP1 Forkhead box protein P1 1 EEPLDPEEAEGPLSLVT(0.088)T(0.502)ANHS(0.41)PDFDHDRDYEDEPVNEDME 316.55 9.007399999999997e-114 230080000.0 96477.0 101060.0 94676.0 98327.0 98243.0 104140.0 102560.0 80974.0 133400.0 100960.0 True False 95957.57855160232 104423.72100793984 108005.55786145588 110775.18811830567 110753.6637181179 96941.04691919127 97598.78098275299 87016.69105764064 100525.35746841872 94516.64636379544 1.0152452741738287 1.1048183047673101 1.1427146647347335 1.1720177596222674 1.1717900283070353 1.0256505139429544 1.0326094369355254 0.9206493713574283 1.0635730459743111 1.0 16.528280820116436 2.558836773646792 3.8955133186702566 0.9933989223071644 1.1240903135546094 0.5180323207827096 0.05405223782982712 0.1806436105133214 5.128496922351702 0.019246187242749544 0.017649011454496943 362.10687765963905 -2.558836773646792 0.130691391247445 EEPLDPEEAEGPLSLVTTANHS(ph)PDFDHDRDYEDEPVNEDME ddPTM_BT-474_Trastuzumab_2h_R1 4 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 A0A3B3IUB6;Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IST0;H0Y882;A0A0B4J2F3;A0A3B3IRW5;A0A3B3IT66 A0A3B3IUB6 FOXP1 Forkhead box protein P1 1 EEPLDPEEAEGPLSLVT(0.01)T(0.091)ANHS(0.899)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLSLVTT(0.011)ANHS(0.989)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLSLVT(0.147)T(0.147)ANHS(0.706)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLSLVT(0.004)T(0.056)ANHS(0.94)PDFDHDRDYEDEPVNEDME 294.99 1.4447999999999994e-96 956655000.0 345181.0 420418.0 353576.0 382207.0 390258.0 388253.0 392817.0 307263.0 478049.0 385823.0 True False 343322.5838492142 434411.358981952 403356.4274623149 430594.367011433 439955.0430596094 361413.98395925475 373814.9410033354 330192.5253098994 360240.22947841167 361199.4458203112 0.9505069507222047 1.202691100467696 1.1167138602504276 1.1921235538817638 1.2180390865784367 1.0005939603214404 1.0349266736951201 0.9141556808317003 0.9973443582126182 1.0 18.462436153764713 2.6192991022387804 5.872480022562551 0.9796844334750494 1.141370167716159 0.4817659724447202 0.07580340261292841 0.18774409654325958 8.331537101723663 0.0243427388521073 0.022876463902332732 416.19715026678386 -2.6192991022387804 0.16168573424110955 EEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 EEPLS(0.999)EEEPCT(0.005)S(0.022)T(0.019)AIAS(0.955)PEKK 93.147 0.0061712 308480000.0 448250.0 275780.0 193150.0 176520.0 198310.0 351220.0 311290.0 331820.0 600980.0 360580.0 True False 445836.67180525645 284959.17058746924 220343.8411101039 198867.41390099667 223563.60302454047 326940.98808294995 296231.71345672006 356582.09334781935 452876.53171941836 337567.4756919311 1.3207334945151332 0.8441546982669831 0.6527401393112672 0.5891190005594198 0.6622782676746021 0.9685204044400325 0.8775481490019653 1.0563283462570348 1.3415881692723264 1.0 18.364816382870643 1.7188269912963687 2.0122436599496942 1.1772191348545427 0.8141142204333645 0.2858817364013394 0.2102934136929473 0.37053479812763696 3.0918565589213616 0.1532760708823675 0.06250789481287412 52.33918928547327 -1.7188269912963687 -0.3631049144211782 EEPLS(ph)EEEPCTSTAIASPEKK ddPTM_BT-474_Trastuzumab_2h_R1 5 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(0.999)EEEPCT(0.001)STAIASPEKK 268.75 1.3090999999999995e-37 6198220000.0 4042430.0 3226600.0 2842380.0 2688310.0 2783150.0 3990900.0 3520260.0 3995610.0 5873200.0 3759580.0 True False 4020666.006036194 3333995.4304791098 3242562.3975901455 3028649.7703613653 3137567.655477541 3715018.476568088 3349971.575100875 4293782.707496474 4425828.556847957 3519640.3856616262 1.142351367036148 0.9472545672737476 0.9212766198500716 0.8604997779601384 0.8914455204740291 1.0555108106221296 0.9517937084561391 1.2199492666888816 1.257466124913777 1.0 21.746996600366792 1.7531292963017469 8.340125064272097 1.1768194251425268 0.960909202138482 0.4360045161015229 0.09918598799675765 0.1077889282905076 27.407903140766173 0.04704098364789456 0.025415942701642765 56.640789248220116 -1.7531292963017469 -0.21591022300404483 EEPPEPVPS(ph)PIIPILPSTAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEPPEPVPSPIIPILPSTAGK 21 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37;H0Y765;H7C2V8 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 EEPPEPVPS(1)PIIPILPSTAGK;EEPPEPVPS(1)PIIPILPSTAGK 138.08 1.4372e-06 107474000.0 333010.0 316600.0 268190.0 259430.0 267140.0 358620.0 329520.0 322780.0 426890.0 347730.0 True False 331217.11116088956 327137.8396112585 305948.8208507312 292273.81140004285 301158.6955371677 333829.4435006761 313579.85871135705 346867.48264362913 321688.67953293293 325537.5736933691 1.0174466418824823 1.004915764099774 0.9398264457758447 0.8978189770356336 0.9251119375265591 1.0254713141504128 0.9632677885801432 1.065522110729839 0.9881768051633218 1.0 18.312464543949538 2.727285605091228 24.82723878641164 1.0131122806305477 0.9554400265920502 0.2771914275438603 0.041175419712079504 884.9253145374958 1948575.3564205447 0.014340800911521389 0.013639920405906213 533.6857478814541 -2.727285605091228 -0.05767225403849752 EEPPPLT(ph)PPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEPPPLTPPAR 11 0 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EEPPPLT(1)PPAR 98.182 0.063843 250300000.0 184780.0 261040.0 221640.0 169870.0 193120.0 217780.0 153830.0 151850.0 192310.0 180730.0 True False 183785.16501098784 269728.5585979877 252844.9854705843 191375.5245828367 217712.68728808055 202725.381198977 146388.65521233313 163181.8180786759 144917.77732197635 169195.65666926256 1.0862286221108164 1.5941813395673812 1.4943940668928422 1.1310900548524747 1.2867510406230893 1.1981713076432992 0.8652033869787112 0.9644563063321282 0.8565100320823027 1.0 17.368333008721258 2.583170938944369 1.1647521673091619 0.9043675997080544 1.3700688610150675 0.5977125688780127 0.15082475676710624 0.30771019734711774 0.853609795160377 0.0800734706192541 0.0637947219147288 382.97545335457494 -2.583170938944369 0.46570126130701317 EEPVLT(ph)PIDEGHLPMINQDEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEPVLTPIDEGHLPMINQDEFR 22 0 P24723-2;P24723 P24723-2 PRKCH Protein kinase C eta type 1 EEPVLT(1)PIDEGHLPMINQDEFR;EEPVLT(1)PIDEGHLPMINQDEFR;EEPVLT(1)PIDEGHLPMINQDEFR 235.69 6.613e-30 191749000.0 168925.0 174437.0 163286.0 139509.0 127033.0 153588.0 147972.0 146272.0 144352.0 157485.0 True False 168015.52656933176 180243.03009560687 186275.24949264506 157170.82509582 143209.8995664187 142970.82306726294 140814.02905206653 157187.55939416605 108778.3838177001 147434.17247030823 1.1395969045315353 1.222532246599112 1.263446909027546 1.066040677424853 0.9713480746484315 0.9697264933342088 0.9550976323377477 1.0661541809502952 0.7378098441838983 1.0 17.169711427224936 3.4913873939397693 3.0955707539922503 0.9624708832145313 1.209087818105477 0.6494048293322668 0.08463253655549084 0.1578688136061435 3.0864088410381174 0.023476740241667165 0.03600507986500491 3100.183453135415 -3.4913873939397693 0.2466169348909456 EEPVS(ph)S(ph)GPEEAVGK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEPVSSGPEEAVGK 14 0 O00567 O00567 NOP56 Nucleolar protein 56 2 EEPVS(1)S(1)GPEEAVGK;EEPVS(1)S(1)GPEEAVGK;EEPVS(1)S(1)GPEEAVGK 182.37 2.2368e-06 1138000000.0 2266910.0 1910270.0 1675950.0 1726720.0 1766700.0 2574940.0 2239540.0 2252480.0 3215510.0 2367360.0 True False 2254705.2084373776 1973852.1821674008 1911909.1923814588 1945322.5749554075 1991678.7729486949 2396940.4585567764 2131204.894326391 2420571.4954616814 2423090.6461264994 2216273.0580011336 1.017340891411145 0.8906177761090625 0.8626686073176462 0.8777449908225219 0.8986612754048451 1.0815185655501256 0.961616569146283 1.0921810770216218 1.093317737802532 1.0 21.07970421025788 2.745612232137228 24.723665359305997 1.047709967443832 0.9040073252412222 0.6040839612202948 0.05508179750446687 312.74794650401 1096525.6515777553 0.017010083747167788 0.017690395668302945 556.6884773599559 -2.745612232137228 -0.14370264220260975 EEPVSS(ph)GPEEAVGK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEPVSSGPEEAVGK 14 0 O00567 O00567 NOP56 Nucleolar protein 56 1 EEPVS(0.001)S(0.999)GPEEAVGK;EEPVS(0.05)S(0.95)GPEEAVGK;EEPVS(0.011)S(0.989)GPEEAVGK;EEPVSS(1)GPEEAVGK;EEPVS(0.004)S(0.996)GPEEAVGK;EEPVS(0.004)S(0.996)GPEEAVGK 305.51 2.4966e-44 4589310000.0 7392820.0 6699680.0 6303770.0 5592500.0 5772040.0 8298570.0 7222720.0 7109250.0 10685420.0 7620810.0 True False 7353017.878539518 6922674.798757913 7191286.022648921 6300509.9265880585 6507075.0804385515 7724909.388632546 6873329.440130158 7639778.335040035 8052141.418292298 7134443.3812962985 1.0306365171831395 0.9703174345606891 1.0079673547486048 0.8831116304189216 0.9120648567339591 1.082762729449114 0.9634009372264867 1.0708303264510481 1.1286292409863175 1.0 22.766369446485854 2.1241394090673693 1.3437029714619766 1.0684159852141282 0.9662714844897902 0.281819906756514 0.06156921139569712 0.5413162905969644 1.8531305225793429 0.04077728839753986 0.021261705275805655 133.08815640500364 -2.1241394090673693 -0.102144500724338 EEQKLEAHSDWVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEQKLEAHSDWVR 13 1 P55735;P55735-4;P55735-3;P55735-2;A8MXL6 P55735 SEC13 Protein SEC13 homolog 0 170.56 1.5978e-05 281750000.0 431100.0 387650.0 327160.0 306420.0 330580.0 421270.0 399630.0 397730.0 542310.0 444150.0 False True 428779.0054997122 400552.6959106261 373221.28427430283 345212.7405820493 372677.4034988286 392148.5964629122 380298.37016514776 427410.6322320169 408664.96708169585 415803.9667440541 1.0312047017185981 0.9633210068849203 0.8975895232477116 0.8302295509233156 0.8962815011532301 0.9431093203213647 0.9146097694619599 1.027913792114223 0.9828308524368825 1.0 18.665543995919958 1.7541947817114505 11.846396823016658 1.0034704561230374 0.9215172623211204 0.33985984669915303 0.04987448813617427 0.18803879094234727 126.21111739374969 0.025300067316399166 0.013879688659319876 56.77992070859692 -1.7541947817114505 -0.08195319380191701 EEQMKEGEET(ph)EGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENK 35 3 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 2 EEQMKEGEET(1)EGS(0.984)EEDDKENDKT(0.016)EEMPNDSVLENK 193.49 3.107199999999999e-21 363800000.0 580710.0 265080.0 250350.0 165000.0 178020.0 454940.0 417920.0 401820.0 962140.0 344190.0 True False 577583.5218829465 273903.02755575645 285597.1039187908 185888.98308216865 200689.7917927928 423491.0686135673 397703.61299056245 431805.8488006163 725033.4890154764 322223.49952411535 1.7924934796374772 0.8500405090264294 0.8863323262908595 0.5768945572148025 0.6228279194074517 1.3142774168830385 1.2342476994319842 1.3400818048290726 2.250095011959904 1.0 18.297702187012103 2.035225720096126 1.528749729733638 1.5824443111715119 0.9382191764314656 0.2332742221032763 0.43501120952084144 0.5370204785768233 2.352223907767793 0.27994677801789664 0.13881515910317832 108.4490420326864 -2.035225720096126 -0.6442251347400463 EEQMKEGEETEGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_BT-474_Trastuzumab_2h_R1 2 EEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENK 35 3 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 EEQMKEGEET(0.025)EGS(0.971)EEDDKENDKT(0.003)EEMPNDSVLENK;EEQMKEGEETEGS(1)EEDDKENDKTEEMPNDSVLENK 239.38 1.6491999999999999e-47 1301780000.0 1197020.0 492600.0 364430.0 378540.0 378805.0 794730.0 880390.0 742240.0 1966230.0 692530.0 True False 1190575.3773214254 508995.8932170121 415738.576317655 426463.1251874192 427043.5713968593 739792.185693191 837802.1722835987 797629.7178183504 1481678.9626321536 648332.1424952374 1.8363664228326784 0.7850850819427808 0.6412431978423914 0.657784948847499 0.65868024027514 1.1410697344820067 1.2922422279715264 1.2302794594580968 2.2853702068967494 1.0 19.306373573915575 1.9882900561580525 1.5178811414858135 1.572027783301522 0.8922105806524975 0.2409487489422686 0.4514487865622171 0.5294921908126792 2.2733901297340573 0.2986155531527408 0.14206716580711318 97.33971182073464 -1.9882900561580525 -0.6798172026490245 EEQNGEDEDGGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEQNGEDEDGGWR 13 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9IYH5;C9JH78;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 ; 282.05 4.0073999999999987e-32 763550000.0 525770.0 525430.0 482660.0 440290.0 473550.0 581200.0 506400.0 509230.0 540530.0 531140.0 False True 522939.3127385381 542918.619920858 550614.3326440734 496030.66885604896 533853.7855492472 541023.0119976375 481903.49736413953 547231.3284175448 407323.62423091725 497242.19046816806 1.0516792878057581 1.091859521030756 1.1073363105525176 0.9975635180695781 1.073629301340275 1.0880472783056652 0.969152470570555 1.1005327763967707 0.8191654530509773 1.0 18.9235891871523 1.2504398456773869 24.99981494723706 0.9095826965888765 1.0594489200938426 0.5123288648407776 0.05868961474862916 138.8576268146472 292229.38343911944 0.03662023822489566 0.01313627897135331 17.80081331917242 -1.2504398456773869 0.14986622350496615 EEQRS(ph)PFNDRFPLK ddPTM_BT-474_Trastuzumab_2h_R1 4 EEQRSPFNDRFPLK 14 2 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK 201.12 9.5422e-09 2508760000.0 2568210.0 2663380.0 2548560.0 2511310.0 2539840.0 3035960.0 2965660.0 2878840.0 3727030.0 3173990.0 True False 2554383.042714955 2752028.9932527915 2907375.09551937 2829241.5885095843 2863273.5691888914 2826091.2310811253 2822199.695878617 3093673.6592533165 2808553.3961433377 2971423.2408104446 0.8596496815506688 0.9261652650001437 0.9784452970511176 0.952150319635354 0.9636034106026391 0.951090101291097 0.9497804476715584 1.0411420415522927 0.9451879347141794 1.0 21.502722682383634 6.279060452045814 0.6746001864786193 0.9806521446377365 4.038276360076371e-21 0.6032772686545618 0.028245219233923993 14.563908285967349 0.9590495860231598 0.011382374452682444 17.31055585880704 1901342.9207946886 -6.279060452045814 -0.9806521446377365 EEQT(ph)DTS(ph)DGESVTHHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEQTDTSDGESVTHHIR 17 0 P36915;A2AB27 P36915 GNL1 Guanine nucleotide-binding protein-like 1 2 EEQT(0.999)DT(0.012)S(0.989)DGESVTHHIR 143.91 9.8773e-06 0.0 135450.0 126080.0 120090.0 122510.0 137720.0 176130.0 124950.0 105880.0 157910.0 153650.0 True False 134720.75224990988 130276.49658303059 136997.62815900802 138019.75343876675 155257.82566960674 163954.54766542328 118905.69114464686 113781.30324774598 118995.19638559227 143843.92545361683 0.93657588824181 0.9056795146002803 0.9524046825542423 0.9595104763966685 1.079349198653998 1.1398086304193027 0.8266299099504801 0.7910052710876228 0.8272521485376374 1.0 17.13414477161421 2.189125764963845 24.999666696923057 0.8375346575578092 0.9916789003993675 0.36454958051454045 0.08451194394157059 109.75839741008855 55505.10889513149 0.033219299098642005 0.024534120881370875 154.5701986118673 -2.189125764963845 0.15414424284155825 EEQTDTS(ph)DGESVTHHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEQTDTSDGESVTHHIR 17 0 P36915;A2AB27 P36915 GNL1 Guanine nucleotide-binding protein-like 1 1 EEQTDT(0.004)S(0.985)DGES(0.004)VT(0.006)HHIR;EEQTDT(0.002)S(0.99)DGES(0.007)VT(0.002)HHIR 120.23 0.00013608 1963220000.0 399990.0 376090.0 403910.0 426340.0 389590.0 390260.0 442200.0 292035.0 437700.0 468650.0 True False 397836.4982830667 388607.9282987942 460777.01715134364 480314.60028637486 439201.9772191562 363282.2447732243 420809.096631956 313828.1346236822 329834.69987951225 438740.355768549 0.9067697854831924 0.8857355453843835 1.0502271128995933 1.094758195755664 1.0010521517898634 0.828011920938653 0.9591301349401002 0.7152935226893912 0.7517765246411745 1.0 18.743007887403163 2.471715813298542 1.74938819221168 0.8148668799849501 0.9895200650631018 0.27304667520663195 0.10160433331575751 0.4065778613610333 2.5245008468927814 0.04619423987178135 0.03627284109699228 296.2891945032542 -2.471715813298542 0.17465318507815164 EEQTPQNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEQTPQNK 8 0 F5GZQ4;P00338;P00338-3;P00338-4;P00338-2;P00338-5;F5GXY2;F5GYU2;F5GXH2;F5H5J4;F5H6W8;F5GXC7;F5H8H6;F5GXU1;F5GWW2 F5GZQ4;P00338 LDHA L-lactate dehydrogenase A chain 0 87.696 0.035224 164740000.0 214690.0 222380.0 198360.0 214490.0 201070.0 201730.0 230320.0 194110.0 248070.0 245380.0 False True 213534.1328943012 229781.78386845152 226287.36382397197 241644.41200784477 226675.07266473921 187784.87992134108 219178.54169215725 208595.47387060802 186936.4724676959 229719.63831961298 0.9295423519568989 1.0002705278020336 0.9850588546945838 1.0519101186797128 0.9867466026102749 0.8174524446189171 0.9541132107617647 0.908043715358743 0.8137592146458453 1.0 17.809514669834634 2.8979874874679985 10.093000332145447 0.8990448774495885 0.9952437869035068 0.37729524615704835 0.05907126194860719 0.44864630560524876 41.70274335363454 0.01722677978038984 0.018281427030881838 790.6558479518869 -2.8979874874679985 0.09619890945391829 EEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK 40 0 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ;;; 474.46 1.2383999999999988e-270 1634713000.0 572934.5 647362.7 643321.1 591108.9 533494.0 819979.8 759959.8 554191.5 937751.0 717640.0 False True 569849.8843110071 668909.7761304835 733895.1190327584 665943.2261322393 601431.2986333235 763296.5264508267 723197.6411456391 595548.0838574161 706654.8312696196 671839.6007974847 0.8481933539413066 0.9956391009646893 1.092366568093951 0.9912235380911659 0.895200726362981 1.1361291081156588 1.0764439016205527 0.8864438522982132 1.0518207477362285 1.0 19.357757310483066 EERLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 EERLSPR 7 1 A0A0G2JHC2;Q6NYC8-2;Q6NYC8 A0A0G2JHC2 PPP1R18 Phostensin 1 EERLS(1)PR;EERLS(1)PR;EERLS(1)PR 105.98 0.0047274 779160000.0 941510.0 1124490.0 1022540.0 1136930.0 1007870.0 1055830.0 1069700.0 934480.0 1134400.0 1042350.0 True False 936441.0147715939 1161917.9698814412 1166504.7439229905 1280865.2214279417 1136216.2703864854 982842.9572564785 1017954.5243491703 1004215.6427932907 854842.320181216 975826.3305992688 0.9596390109667488 1.1907015966333794 1.1954019965895195 1.3125954703859488 1.1643632014814755 1.0071904461246712 1.0431718149314848 1.0290925867685776 0.8760189117424667 1.0 19.896264886284975 2.742334140168057 5.2248319529918685 0.9993578682516214 1.1768344012296625 0.46880427309881223 0.09175375161921051 0.16426251522551072 15.148067807480736 0.029858865307039174 0.030003289681598176 552.5023634717119 -2.742334140168057 0.1774765329780411 EERPEGS(ph)PTLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EERPEGSPTLFK 12 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 EERPEGS(0.989)PT(0.011)LFK 78.32600000000002 0.015765 97901000.0 204090.0 207030.0 177390.0 144760.0 161090.0 192390.0 182370.0 172960.0 205060.0 174660.0 True False 202991.20211653048 213920.8683977223 202364.97009847942 163086.60115742264 181603.85664476463 179090.53213734616 173548.06637894546 185867.15347308418 154525.71066322317 163513.0492660507 1.241437322756089 1.3082800997102897 1.237607463176918 0.9973919628400166 1.1106383096634602 1.095267521101325 1.061371353283045 1.1367114386733828 0.9450359549701487 1.0 17.319046249977806 3.849948405188232 5.254462152134487 1.0649580411101083 1.273692176467222 0.7349858475357658 0.05825380627325312 0.11244208148064641 4.479552302784733 0.014511269303793548 0.026815131065212112 7078.616843980572 -3.849948405188232 0.20873413535711371 EERS(ph)PQTLAPVGEDAMK ddPTM_BT-474_Trastuzumab_2h_R1 4 EERSPQTLAPVGEDAMK 17 1 Q92797 Q92797 SYMPK Symplekin 1 EERS(0.998)PQT(0.002)LAPVGEDAMK;EERS(0.995)PQT(0.005)LAPVGEDAMK;EERS(0.939)PQT(0.061)LAPVGEDAMK;EERS(1)PQTLAPVGEDAMK 217.11 3.0753e-15 3779890000.0 4323260.0 3836280.0 3335540.0 3389290.0 3300030.0 4549900.0 4244920.0 4001200.0 5421800.0 4344700.0 True False 4299984.048519344 3963968.26071977 3805155.038966588 3818373.7664882704 3720269.259689749 4235376.122312545 4039577.0024308483 4299789.8616819205 4085670.038397847 4067417.526315193 1.0571779318694239 0.97456635200932 0.935521129647539 0.93877103636013 0.9146514306978618 1.0412936697328712 0.9931552333380521 1.05713018982274 1.004487494083055 1.0 21.95568166246663 2.720706175734785 24.985461072406125 1.0233754510342343 0.9617178950665116 0.31843988889789243 0.039978316553121084 938.5232833220365 1313365.2700023397 0.013279605732354644 0.012544650771611831 525.6615069418688 -2.720706175734785 -0.06165755596772271 EES(ph)DGEYDEFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 EESDGEYDEFGR 12 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR 257.19 3.5806e-21 22240240000.0 1673910.0 1439140.0 1156740.0 1095950.0 1148260.0 1585880.0 1394800.0 1360100.0 2012330.0 1395180.0 True False 1664897.854548885 1487040.9049214988 1319598.937435681 1234697.1576297157 1294484.1047297632 1476251.8483599704 1327328.1953465652 1461597.5684478574 1516418.2353405056 1306138.4179263078 1.274671835464546 1.138501773251874 1.0103055842509738 0.9453034538176928 0.9910772755501308 1.1302415028138775 1.0162232249885885 1.1190219569288564 1.160993516864812 1.0 20.31687636381507 4.586368858403618 2.975891618893075 1.050691698816631 1.2804786776482955 0.530171587461367 0.0662019638452944 0.2525405516446638 3.67596177383504 0.017518825640133136 0.1129250277582814 38580.589424826285 -4.586368858403618 0.22978697883166443 EES(ph)DGEYDEFGRK ddPTM_BT-474_Trastuzumab_2h_R1 4 EESDGEYDEFGRK 13 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK 186.08 4.9677e-06 3164240000.0 1964730.0 1476040.0 1114250.0 1064500.0 1208510.0 1647110.0 1582350.0 1604210.0 2377270.0 1473080.0 True False 1954152.1119820245 1525169.099114978 1271126.7147653801 1199265.5908543565 1362406.5851000326 1533249.1625798834 1505805.6853359905 1723924.296213323 1791423.6622859668 1379066.7732327632 1.4170105102316148 1.1059428946574694 0.9217296358940231 0.8696211192465159 0.9879192302678164 1.1118019753211013 1.0919019401838899 1.250065863143201 1.2990115468350891 1.0 20.39526088192628 1.9689038728967665 2.921317307340068 1.2070433803736185 1.0514999215757803 0.08069727657607306 0.1575402222853755 0.5274474420884845 8.459410968967557 0.08285507328616767 0.046648072811612075 93.09018060798833 -1.9689038728967665 -0.15554345879783815 EES(ph)EEEEDEDDEEEEEEEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EESEEEEDEDDEEEEEEEKEK 21 1 H0Y993;A0A494C028;P35659;B4DFG0;H0Y8X0;A0A494C198;D6R9L5 H0Y993 DEK Protein DEK 1 EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK 269.25 8.777799999999997e-38 1889680000.0 1413540.0 785364.0 687050.0 460512.0 627665.0 1136120.0 1021510.0 1067200.0 2270340.0 985280.0 True False 1405929.6576990592 811504.3659774369 783780.6680543458 518812.7719826403 707594.4172880767 1057582.6985388105 972095.6587528472 1146839.8831317944 1710845.1279973765 922398.5868593527 1.5242105503284291 0.8797762459074269 0.8497201526760976 0.5624605017545944 0.7671243509786195 1.1465571539303223 1.0538780876309737 1.2433235474011677 1.8547785657636162 1.0 19.815030777178702 1.7813751936507756 1.8896578390958079 1.4361601463903133 0.9214887360279965 0.26474842481818883 0.30844770568469654 0.39379196435317154 2.7602117679046163 0.21216515449460346 0.09000608691948664 60.447061528544104 -1.7813751936507756 -0.5146714103623168 EES(ph)EES(ph)DDDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 2 EESEESDDDMGFGLFD 16 0 P05387;H0YDD8;P05386-2;P05386 P05387;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 2 EES(1)EES(1)DDDMGFGLFD;EES(1)EES(1)DDDMGFGLFD 204.28 2.7022e-12 36062000.0 208259.0 143985.0 107616.0 119550.0 124264.0 139251.0 130727.0 137842.0 193197.0 149797.0 True False 207137.75668375 148777.45368422964 122767.39738495946 134685.01774226225 140088.28382956743 129624.90613159508 124403.23558436385 148128.46998749324 145586.18805716728 140236.8272123361 1.4770567817404876 1.060901452504783 0.8754290853933415 0.960411187414646 0.9989407676590989 0.9243285712341934 0.8870939114730668 1.056273683111842 1.038145193036431 1.0 17.097505735766635 4.716424410380114 3.376764498769277 0.9689553893626396 1.53133243528965 0.8769195634553998 0.05697189724714882 0.09221109848323465 1.7890293159726374 0.01448491696797522 0.12980058615250442 52050.44063277272 -4.716424410380114 0.5623770459270104 EES(ph)EES(ph)DEDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 9 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388;P05388-2;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD 317.55 9.824299999999997e-58 2448813000.0 2867746.0 2809230.0 2337253.0 2341161.0 2455571.0 2941067.0 2728280.0 2712702.0 3428430.0 2886391.0 True False 2852306.374172535 2902733.5223346027 2666317.9066327363 2637551.7425553543 2768273.41154039 2737757.9608170316 2596302.673358282 2915137.5980616445 2583539.365108327 2702179.055216341 1.0555578723276628 1.0742195328363262 0.9867288037354973 0.9760832604574339 1.0244596508867387 1.0131667461236546 0.960818147245397 1.078809930242855 0.9560948080479754 1.0 21.365691844844115 4.243570491141397 24.99996254110971 1.004681523589489 1.064888722977445 0.3638860380632002 0.03402803013400144 134.8165472685316 672731.1570217244 0.008263221236584344 0.0212241381785287 17521.468053213808 -4.243570491141397 0.060207199387956045 EES(ph)EES(ph)EAEPVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 EES(1)EES(1)EAEPVQR;EES(1)EES(1)EAEPVQR 336.16 1.8434999999999997e-62 2161900000.0 1765710.0 1525220.0 1475480.0 1383350.0 1426000.0 1797140.0 1734520.0 1688140.0 2150560.0 1719910.0 True False 1756203.6135488222 1575986.0256850387 1683214.7588979332 1558481.9681619308 1607592.6474358067 1672907.9418125176 1650614.6410901383 1814117.5790012276 1620583.3040276067 1610143.8713109689 1.0907122306523656 0.978785842535848 1.0453815891169218 0.9679147285720653 0.9984155304872943 1.038980411390472 1.0251348780070308 1.1266804236097143 1.0064835403237216 1.0 20.618758172666187 1.9723352434771275 24.657005079658497 1.0628246097484002 1.0172993194328817 0.0058464158888085205 0.04703793683070921 1061.0371478333232 945679.282129931 0.018445784334432058 0.01194356329505269 93.82860154138412 -1.9723352434771275 -0.04552529031551855 EES(ph)EESEAEPVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 EES(0.992)EES(0.008)EAEPVQR 310.14 1.5193e-50 245100000.0 177380.0 194670.0 178270.0 146220.0 143380.0 176740.0 190430.0 147270.0 261440.0 187690.0 True False 176425.00578877077 201149.47326950004 203368.86644938219 164731.43700772562 161638.5931201586 164522.37980120865 181218.1733867555 158260.03522190725 197011.61511651747 175711.46351050664 1.0040608749367195 1.1447714864515504 1.1574023822140767 0.9375110406377983 0.9199092073494307 0.9363212650685768 1.0313395026495786 0.9006813332497462 1.1212223219843434 1.0 17.42284879105494 3.7335925023129053 24.994793070752372 0.969072962243999 1.1063475733788606 0.3795885527540116 0.07189708991679301 366.2795763481849 1842770.2007308449 0.018294842414790256 0.02935487252760877 5414.925705111935 -3.7335925023129053 0.1372746111348616 EES(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 6 EESPLR 6 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR 150.35 0.011038 38384800000.0 15718970.0 16361680.0 14801940.0 14152120.0 14482910.0 14231210.0 15520270.0 15043960.0 19482130.0 15818530.0 True False 15634340.81206174 16906268.62795556 16885924.491231125 15943776.940950425 16327222.741566978 13247439.949364929 14769495.246910995 16166616.686880989 14681020.108667219 14808977.872475104 1.055733957244997 1.1416229245219287 1.1402491540362394 1.076629128508898 1.1025219216455027 0.8945546453943626 0.9973338723371655 1.0916767400219618 0.9913594466201671 1.0 23.819968732306236 2.944780848758966 24.99992669855443 1.0073521102595038 1.1064832273539813 0.5226399480002548 0.05107424686680316 279.8547208950933 126701.24955320665 0.016712998118571142 0.017726886066866298 880.6043952309512 -2.944780848758966 0.09913111709447753 EES(ph)S(ph)EDENEVSNILR ddPTM_BT-474_Trastuzumab_2h_R1 2 EESSEDENEVSNILR 15 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 2 EES(1)S(1)EDENEVSNILR;EES(1)S(1)EDENEVSNILR 230.45 4.7733e-13 391140000.0 662760.0 604020.0 598330.0 497670.0 554840.0 648090.0 605370.0 633000.0 818480.0 657400.0 True False 659191.7737995585 624124.440562199 682569.6632224099 560674.9709727447 625495.5852056687 603289.0637397608 576085.940362024 680237.6743088706 616776.5710701001 615444.1691715434 1.071082978472124 1.014104076089209 1.109068372751382 0.9110086650548267 1.0163319705305773 0.9802498649907679 0.9360490670299143 1.1052792574581483 1.0021649435729485 1.0 19.231268461101557 3.7675288813886003 24.98041832485323 1.0006578505879684 1.059687019715164 0.2660937481848572 0.05335539194258204 1187.6356814261062 1024139.2588176398 0.01415104989464083 0.025504860388420904 5855.026720396279 -3.7675288813886003 0.05902916912719558 EES(ph)WESGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EESWESGR 8 0 Q9NQ29-3;Q9NQ29;B8ZZ08 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 1 EES(1)WESGR;EES(1)WESGR 198.61 0.00014114 554710000.0 563040.0 492160.0 423170.0 446220.0 482570.0 533960.0 479580.0 501850.0 685420.0 580050.0 True False 560008.6551996254 508541.2480829979 482748.6577404229 502711.40624803264 544022.4290835188 497048.60200663976 456380.88322648907 539300.5953426645 516507.42515744834 543030.7123942109 1.0312651612844497 0.9364870834668824 0.8889896035750802 0.9257513337166304 1.0018262626158574 0.9153231864458697 0.8404329125590622 0.9931309280186007 0.9511569297437673 1.0 19.050674269825212 1.6062379839835075 24.999999999999766 0.9791105396307778 0.9329340562214735 0.1479615549885268 0.05166448356341146 0.3350360944193493 5004.395544777649 0.026349873373609424 0.013193982925602065 40.386664252768036 -1.6062379839835075 -0.04617648340930425 EESDDEAAVEEEEEEKKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EESDDEAAVEEEEEEKKPK 19 2 P14625 P14625 HSP90B1 Endoplasmin 0 220.8 1.5838e-19 487870000.0 759070.0 449010.0 315290.0 307820.0 330840.0 568770.0 595340.0 542780.0 1182600.0 513920.0 False True 754983.251460606 463955.02641772287 359680.0914501922 346789.98043850437 372970.51295768813 529452.2686405656 566541.1297803451 583284.9997809938 891164.0760281269 481121.1856109521 1.5692163929590628 0.9643205086231429 0.7475873069140619 0.7207954893903349 0.7752111611632135 1.1004551129217897 1.1775435102923653 1.212345282696934 1.8522652975600764 1.0 18.8760408026512 1.958285166551215 1.6305456405294254 1.4022292699389898 0.941179451010085 0.24122778977045978 0.30239683980751925 0.5013620382194871 2.48157725752641 0.20032262992487154 0.0945817284660466 90.84168192678501 -1.958285166551215 -0.46104981892890473 EESDWPAS(ph)GSSSPLRGESAADSDGWDSAPSDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EESDWPASGSSSPLRGESAADSDGWDSAPSDLR 33 1 I3L4Q4;Q9BUL5-4;Q9BUL5;I3L0Y2;A0A087WVQ2;Q9BUL5-2 I3L4Q4 PHF23 PHD finger protein 23 1 EESDWPAS(0.25)GS(0.25)S(0.25)S(0.25)PLRGESAADSDGWDSAPSDLR 173.94 5.770399999999999e-15 66263000.0 19858.0 18736.0 19246.0 20120.0 19120.0 21674.0 20686.0 22634.0 20927.0 18782.0 True False 19751.086734431225 19359.616433848838 21955.669510769145 22667.189937049934 21554.818666881245 20175.727395108064 19685.339151806045 24323.064013123178 15769.821257433287 17583.3166799208 1.1232856174959245 1.101021882632443 1.2486648514862577 1.289130506472345 1.2258676255029681 1.1474358201230406 1.1195464149426166 1.3833035289012796 0.8968627218914604 1.0 14.101919606251506 1.2207351978663539 24.994178838889688 0.948431138006759 1.2087863990185637 0.584139426603148 0.08646587339804604 196.53196444787946 275562.8680347822 0.08538745504559461 0.021527610763492893 16.623987278378014 -1.2207351978663539 0.2603552610118046 EESEES(ph)DEDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 4 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388;P05388-2;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 1 EESEES(1)DEDMGFGLFD;EESEES(1)DEDMGFGLFD;EES(0.001)EES(0.999)DEDMGFGLFD;EES(0.001)EES(0.999)DEDMGFGLFD 267.93 2.2015e-27 696100000.0 816890.0 849930.0 674200.0 733870.0 733970.0 839780.0 869080.0 785960.0 1006680.0 910210.0 True False 812491.9550050108 878219.406256465 769121.499748548 826777.866754614 827436.7289189764 781727.9852294847 827039.2801919947 844612.3262240122 758597.202820899 852119.6185300123 0.9534951869863494 1.0306292534039732 0.9025980426026994 0.9702603352577245 0.9710335391014512 0.9173923099881682 0.9705671154699107 0.9911898609740368 0.8902473154292018 1.0 19.70069644121044 EESEKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EESEKPR 7 1 P83916;J3KS05;K7ELA4 P83916 CBX1 Chromobox protein homolog 1 0 ; 136.16 0.0027429000000000004 877840000.0 1898080.0 1568240.0 1416940.0 1433800.0 1580470.0 1156120.0 1620540.0 1863620.0 2753500.0 2150500.0 False True 1887860.9481765109 1620437.9203789025 1616432.8357367343 1615318.9329891736 1781733.486320388 1076200.1456137446 1542148.2891360244 2002692.7876706133 2074936.82000968 2013253.248864321 0.9377165784987338 0.804885287677044 0.8028959280947722 0.8023426431326398 0.8850021661832491 0.5345577592987025 0.7659981624298644 0.9947545291683175 1.0306387540564779 1.0 20.94109723085326 1.6870777531249432 5.051722489509729 1.013430355792881 0.7857989037224482 0.503799841925247 0.09905569601876259 0.12894105975358583 7.596261049569112 0.054436950155174815 0.026642847371886845 48.64942965192397 -1.6870777531249432 -0.22763145207043278 EESGKPGAHVTVK ddPTM_BT-474_Trastuzumab_2h_R1 12 EESGKPGAHVTVK 13 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;; 175.28 1.1137e-05 86800741000.0 109851784.0 109471786.0 105579756.0 98935597.0 96068974.0 135347124.0 130568536.0 125128249.0 166390896.0 132372588.0 False True 109260354.2006245 113115488.2199179 120444467.92910971 111460833.43610479 108302788.39347963 125990895.89073952 124252437.093435 134465954.32875386 125386089.20457643 123924456.10396564 0.8816690234973572 0.9127777661983069 0.9719184712665883 0.8994256415585591 0.8739420111121544 1.0166749958139034 1.0026466203668 1.0850639055130853 1.0117945492484919 1.0 26.88488568603033 2.64061896360365 5.201678924803197 1.0333007004740469 0.9115447833478038 0.7419031282429686 0.03378502247767319 0.11538635034504037 4.849330175328722 0.011600552862746737 0.010916519423156027 437.1384052939427 -2.64061896360365 -0.12175591712624312 EESLADDLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EESLADDLFR 10 0 O60934;A0A0C4DG07;A0A087X1V5 O60934 NBN Nibrin 0 ; 246.51 2.9864e-12 129111000.0 256600.0 285110.0 251380.0 278100.0 262410.0 294210.0 283390.0 266140.0 321900.0 283910.0 False True 255218.49411094005 294599.71399736527 286772.1189658705 313307.4314857643 295826.3580740744 273871.9551958448 269681.3430450699 286000.71823153656 242572.05823901072 265790.6207324204 0.9602238536772009 1.108390180155935 1.078939949707905 1.1787753481383396 1.1130052567652184 1.030404889537318 1.0146382980028719 1.0760376624405503 0.9126434092014686 1.0 18.019930669865154 2.626289356327678 4.835329307843379 1.0157905017843245 1.093332931089825 0.28428797688761476 0.06357157093600146 0.3318408172064159 11.963336833635575 0.021141563695020932 0.019850203732111087 422.95031848951237 -2.626289356327678 0.07754242930550048 EESLVEELS(ph)PASEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EESLVEELSPASEK 14 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 1 EESLVEELS(1)PASEK 230.55 2.4814e-09 0.0 205680.0 173690.0 152670.0 142850.0 195040.0 273000.0 159110.0 173140.0 257770.0 199470.0 True False 204572.64173319621 179471.16665217766 174164.6089685714 160934.7953532597 219877.1879073492 254128.1525728753 151413.24144077444 186060.58598710544 194246.03744103695 186739.653825141 1.0954965244005093 0.9610768948957709 0.9326600183786108 0.8618137179581342 1.1774531193746214 1.3608687141020164 0.810825330020985 0.9963635584401832 1.0401970522175477 1.0 17.510668788194852 4.770029799490507 21.022897624473742 1.0136387687689417 1.0954977146130693 0.02499360890310587 0.14902953375076528 6670.11720715883 4455296.994943903 0.03690252339500284 3.21656851436455 58888.406075715924 -4.770029799490507 0.08185894584412767 EESQDTLTHSS(ph)PSFNLDTLLVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EESQDTLTHSSPSFNLDTLLVPK 23 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 EES(0.007)QDT(0.078)LT(0.061)HS(0.291)S(0.557)PS(0.006)FNLDTLLVPK 116.28 0.00031627 81987000.0 29163.0 33611.0 26164.0 31840.0 27243.0 38704.0 38858.0 38794.0 48366.0 41364.0 True False 29005.989648313916 34729.72181672146 29847.663778435195 35870.94073537126 30712.234568088163 36028.48357941598 36978.290088024725 41689.00527194049 36446.84737119597 38724.11410649792 0.7490420457016137 0.8968500020738707 0.7707771879906414 0.9263204998497849 0.7931036068023217 0.9303888393761961 0.9549163600315845 1.076564467228059 0.9411925414474537 1.0 15.240944614334948 2.3949553085683286 2.0144549712187794 1.0124651006942276 0.8327875721807981 0.6203515105532671 0.06108162018110372 0.19353867631474606 1.6055097618496408 0.024553758460133544 0.018658891387606853 248.28775895836492 -2.3949553085683286 -0.17967752851342944 EESQIPVDEVFFHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EESQIPVDEVFFHR 14 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 ;; 167.61 3.6202e-06 273317000.0 332344.0 391618.0 356863.0 365963.0 365029.0 386500.0 370876.0 366305.0 443810.0 398283.0 False True 330554.69683088927 404652.76839192025 407106.2084911984 412293.8782769679 411513.2794536088 359782.1647231368 352935.3109960948 393640.53915910085 334438.9722493177 372864.237952768 0.8865282941743579 1.0852549727313323 1.0918349550668573 1.105747980929173 1.103654460704104 0.9649146474827969 0.9465517876798963 1.0557208203189619 0.8969456928494232 1.0 18.508290906833064 2.726469628151717 24.74966918724131 0.9806404731644188 1.0612166617580996 0.2437671386006055 0.07088114009875107 1004.8918827789995 2056961.3068801325 0.022894979843985863 0.02173309626864894 532.6839704246628 -2.726469628151717 0.08057618859368076 EESSIHCK ddPTM_BT-474_Trastuzumab_2h_R1 3 EESSIHCK 8 0 A0A669KBJ7;Q9H2P0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 0 ;; 112.17 0.0030923 379295000.0 391073.0 516820.0 465220.0 468707.0 455860.0 492660.0 564920.0 518580.0 619350.0 577330.0 False True 388967.5064202951 534022.0412757131 530718.932235271 528045.2581423891 513911.0689060915 458603.5737968964 537592.6613960296 557279.0728958827 466719.4913648071 540484.3051229189 0.7196647575766972 0.9880435679890166 0.9819321804628035 0.9769853687468301 0.9508343980297743 0.84850488617352 0.994649902505066 1.0310735531333222 0.8635208958725713 1.0 19.04389319924209 4.742218673795182 24.762991442448914 0.9627808798713758 0.7196646513820041 0.6225816779876077 0.05596945496650603 205.9446074690425 1394062.2493173627 0.013544685201143276 0.10014983150776371 55235.54885593178 -4.742218673795182 -0.24311622848937176 EESYS(ph)PSKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EESYSPSKDR 10 1 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 EES(0.004)YS(0.594)PS(0.402)KDR;EES(0.002)YS(0.831)PS(0.167)KDR 171.26 1.0723e-05 1592810000.0 1502450.0 1193090.0 1100880.0 1002060.0 1053980.0 1533270.0 1492700.0 1353820.0 2079600.0 1445680.0 True False 1494360.9761378886 1232801.279411865 1255874.3349795032 1128920.6932564732 1188198.105571104 1427278.6538293501 1420492.3983322468 1454848.9229586662 1567110.445212323 1353415.4646910836 1.1041406095348376 0.9108816262072572 0.9279296474317705 0.8341272304836185 0.8779256160208792 1.0545753991034275 1.0495612288991196 1.0749462828775453 1.157893112718359 1.0 20.36817334791533 2.653807591372301 5.739391824365038 1.0723645014362697 0.924601748910616 0.45257949294000765 0.07486057433423433 0.20503234441467688 10.905985353956396 0.024777188288048917 0.0233507598971984 450.6170201909472 -2.653807591372301 -0.14776275252565374 EETDKEEPASK ddPTM_BT-474_Trastuzumab_2h_R1 3 EETDKEEPASK 11 1 P05455 P05455 SSB Lupus La protein 0 ;; 122.45 0.00035622 1028350000.0 1169010.0 838860.0 714140.0 664900.0 681510.0 1015460.0 963760.0 977970.0 1526490.0 999980.0 False True 1162716.1800492203 866780.9479984217 814684.7045838437 749076.271826267 768296.2588737577 945263.6403357222 917139.246879272 1050951.0874310362 1150306.9934180407 936160.4202740503 1.2420052748105377 0.9258893339505653 0.8702404918436458 0.800158023778642 0.8206886792424397 1.0097239958713562 0.9796817158866746 1.1226185861643052 1.228749868618993 1.0 19.836396245381337 1.9073120443658134 2.072509147509424 1.1339280364152546 0.927015648725676 0.26018107518946876 0.12782516951442674 0.3965484202102255 3.1482595852427915 0.07940951382669856 0.03847119934493256 80.78152440644904 -1.9073120443658134 -0.20691238768957865 EETEELKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EETEELKR 8 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;; 167.23 0.00050326 7149800000.0 5047180.0 4376220.0 3791300.0 3494170.0 3684980.0 4854800.0 4625650.0 4402760.0 6003380.0 4617840.0 False True 5020006.543674408 4521879.837219146 4325082.085429651 3936531.563734677 4154240.3604123434 4519199.10296995 4401889.637801013 4731316.307962277 4523927.440170581 4323125.497668276 1.1611984307145382 1.045974686522071 1.0004525863897382 0.9105753617048332 0.9609344819281739 1.04535459481975 1.0182192583063387 1.0944203008943791 1.046448326011033 1.0 22.043643286713596 -0.017050283417504364 8.050538967206263 1.0000000082349747 1.0299279256114526 0.02023685459683 0.0649389209709241 0.0 0.0 0.06691805446827306 0.015772736699442215 0.9615009475825943 0.017050283417504364 0.02992791737647793 EETGDEEDGS(ph)PIALHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EETGDEEDGSPIALHR 16 0 P79522-2 P79522-2 1 EETGDEEDGS(1)PIALHR 149.52 5.3313e-07 303530000.0 110180.0 117530.0 91688.0 104820.0 106620.0 119080.0 92991.0 103880.0 113160.0 110210.0 True False 109586.8031221489 121441.91500161457 104596.87343361737 118090.20125256325 120197.42501374875 110848.27988416843 88492.67006988291 111632.05309195175 85273.23426631381 103176.30344447197 1.062131511438835 1.1770330099776534 1.013768374536794 1.1445477043681618 1.1649712288678506 1.0743579308772717 0.8576840525936115 1.0819543767821702 0.8264808044049249 1.0 16.65475213871825 2.422380979096847 8.674552175362575 0.9597667462599521 1.1131120866441444 0.4997185388276739 0.08060596058257502 0.2515890250001656 36.54035442711018 0.0263823083893385 0.022067515273039743 264.47277925186 -2.422380979096847 0.15334534038419234 EETKEDAEEKQ ddPTM_BT-474_Trastuzumab_2h_R1 4 EETKEDAEEKQ 11 2 P43487;F6WQW2;P43487-2 P43487 RANBP1 Ran-specific GTPase-activating protein 0 ;;; 174.9 4.154600000000001e-05 5874900000.0 10818500.0 7040550.0 5930770.0 5728920.0 5899790.0 9217770.0 9722610.0 9601300.0 16905600.0 9536710.0 False True 10760254.398048354 7274890.450647655 6765770.864823039 6454200.684600599 6651093.285704982 8580567.256196601 9252290.210322974 10317797.76041351 12739441.403434044 8928069.003011785 1.205216312107187 0.8148335825130328 0.7578089800314806 0.7229111560879901 0.7449643683826042 0.961077614129331 1.036314818714082 1.155658379984845 1.4268977310924158 1.0 23.089916746795733 2.0640298088213127 1.7258645257749832 1.2166576499113617 0.8391908721377247 0.45392728071031985 0.16242907203813264 0.31122761584113284 1.7541346800021138 0.09699173028685398 0.05100783221759315 115.8856894288917 -2.0640298088213127 -0.377466777773637 EETNGPSNQKPVKS(ph)PDNSIK ddPTM_BT-474_Trastuzumab_2h_R1 3 EETNGPSNQKPVKSPDNSIK 20 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 EET(0.002)NGPS(0.011)NQKPVKS(0.987)PDNSIK;EETNGPSNQKPVKS(1)PDNSIK;EETNGPSNQKPVKS(1)PDNSIK 152.47 3.3429e-08 4101960000.0 2403100.0 1330290.0 1218375.0 1018785.0 1082061.0 2111520.0 1955540.0 1853780.0 3143010.0 1779440.0 True False 2390161.9766095118 1374567.8984727135 1389911.6096946548 1147763.0765416198 1219855.0544719768 1965555.5923834364 1860943.0593117466 1992118.476904106 2368457.2996762763 1665874.6157447698 1.434779036800997 0.8251328674326306 0.8343434713261784 0.6889852727772579 0.7322610254953738 1.1798940771449877 1.1170967140763872 1.1958393855551253 1.4217500388631588 1.0 20.66784838776439 2.7147760841569357 21.209072443210577 1.1893883482862442 0.8830537916629979 0.2935415938549464 0.2158117447867391 139.92885027938303 124775.6724883771 0.0701535939618275 0.06621572280778579 518.5326222084063 -2.7147760841569357 -0.30633455662324627 EETPGQRPAVTETHQLAELNEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EETPGQRPAVTETHQLAELNEK 22 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1;I3L1C0 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ;; 301.27 5.0808e-56 3288420000.0 2273120.0 2109470.0 1935440.0 1841190.0 1878540.0 2544170.0 2372150.0 2267550.0 3010580.0 2428560.0 False True 2260881.774487375 2179682.433748459 2207933.1288539465 2074284.4652185387 2117760.934021082 2368297.5162319853 2257400.042006997 2436766.095385589 2268662.898705188 2273567.221605179 0.9944204653386726 0.9587059546933319 0.9711316682755069 0.9123479814043312 0.9314705604023904 1.0416659308449763 0.99288906901694 1.0717809758293353 0.9978428951414385 1.0 21.116526229594324 2.7356575039184374 24.99934786356188 1.0267401492076678 0.9525786377490832 0.5486850658463805 0.03023903633671152 179.02617626276233 1541629.561806734 0.009710263779520325 0.00952725654617437 544.0734129680553 -2.7356575039184374 -0.07416151145858452 EETQPPVALKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EETQPPVALKK 11 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ; 82.85 0.028556 1193850000.0 499350.0 479890.0 429200.0 423300.0 446900.0 529270.0 532240.0 421640.0 731080.0 600860.0 False True 496661.55508300004 495862.8485503686 489627.62932672276 476889.73659807286 503810.06601617264 492682.81066756643 506493.51784575346 453104.9178445372 550915.1299701027 562512.6003778726 0.882934097386198 0.8815142064680304 0.8704296205948299 0.8477849852211633 0.8956422765956424 0.8758609324246294 0.9004127507641823 0.8055018101641814 0.97938273667118 1.0 19.101525887742607 1.1247565185999684 6.79900456643556 0.9980469016176513 0.8692795474246736 0.7760448691215102 0.025790741967901886 0.09515323855341563 5.025571778955202 0.02515434746047061 0.006317449541135228 13.327740207180804 -1.1247565185999684 -0.1287673541929777 EETVNDPEEAGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EETVNDPEEAGHR 13 0 O00567 O00567 NOP56 Nucleolar protein 56 0 ; 162.72 3.9961e-05 1173830000.0 1296420.0 1627850.0 1514810.0 1530810.0 1466800.0 1624480.0 1544350.0 1400910.0 1684490.0 1543190.0 False True 1289440.2187658031 1682032.003193896 1728082.0810354473 1724610.3890425155 1653588.2855952631 1512183.5212145953 1469643.8905100867 1505453.0178768395 1269370.01050957 1444702.2930085722 0.8925300561962576 1.1642758590014335 1.1961509920751499 1.193747941972902 1.1445875690774248 1.0467094352466864 1.0172641779709326 1.0420506876484252 0.8786377765526521 1.0 20.462340799316365 2.1290003636007495 1.2492341878863888 0.9664612273160615 1.1269237604099454 0.3279952099579464 0.0902702806864235 0.5434966206024705 1.6022376979554152 0.06243208896479826 0.03232365255280984 134.58614808398673 -2.1290003636007495 0.1604625330938838 EETVSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EETVSLR 7 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 155.51 0.0037367 325660000.0 300310.0 400900.0 319280.0 302170.0 306380.0 332530.0 313860.0 305380.0 344750.0 349670.0 False True 298693.1643275778 414243.7141508321 364231.8487684908 340424.6910178115 345395.67694346583 309542.9837914222 298677.39273836615 328169.00628821965 259790.98191332383 327353.7612324519 0.9124476321977484 1.2654313565582653 1.112655151409279 1.0399290655349398 1.0551144292434218 0.9455916517532165 0.9123994531600239 1.0024904099244147 0.7936092774228057 1.0 18.320491029750084 2.9449677491620894 1.443147659355367 0.9304928180194688 1.106260769187739 0.3582946522972861 0.09762563198480396 0.41502118797406906 1.774558351591725 0.03619241389328384 0.0412862575962803 880.9834484848673 -2.9449677491620894 0.17576795116827026 EEVDTGAVNLIESGACGAFVHGLEDEMYEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEVDTGAVNLIESGACGAFVHGLEDEMYEVR 31 0 Q96HW7-2;Q96HW7-3;Q96HW7 Q96HW7-2 INTS4 Integrator complex subunit 4 0 ;; 214.3 9.434199999999999e-35 60113000.0 29285.6 37212.3 30974.7 26879.3 31154.0 35017.0 32849.8 29659.0 40376.0 34516.8 False True 29127.92958353605 38450.888910189635 35335.66852308119 30282.216624003286 35121.277235775015 32596.357211151564 31260.729675577615 31872.30518535036 30425.87581068123 32313.90827268078 0.9014053434125064 1.1899176226447747 1.0935126826783472 0.9371264029243052 1.086878038379148 1.0087407854254997 0.9674078855390713 0.986333962342037 0.9415721414423971 1.0 14.979867630450606 2.4727027639986137 4.764846700631549 0.974803469193934 1.0473867173470741 0.14487724821748693 0.07709141991109823 0.34746072466798217 21.501829391417203 0.026069961385186333 0.022661062737171278 296.9632886098338 -2.4727027639986137 0.0725832481531401 EEVEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEVEGR 6 0 Q9Y6Q5;K7ERH5;K7EL08;Q9Y6Q5-2 Q9Y6Q5;Q9Y6Q5-2 AP1M2 AP-1 complex subunit mu-2 0 104.11 0.079355 278300000.0 744100.0 777640.0 725620.0 662730.0 723610.0 745930.0 798660.0 603740.0 978350.0 725690.0 False True 740093.8482772815 803523.2773066927 827780.9887978949 746631.550048763 815757.4443275076 694365.6148303478 760025.7646225182 648794.1445296005 737248.7517183474 679375.8429055341 1.0893732180880475 1.1827374872062106 1.218443365983792 1.0989963182317344 1.200745438399312 1.0220640343358485 1.1187117890033638 0.954985596418703 1.0851854086617272 1.0 19.373850394537943 2.5208399824912653 1.4681602827144973 1.020175949304311 1.161186438022293 0.4821039647543447 0.05966067210156605 0.31188280361586523 1.3617816713645952 0.026705120396235727 0.021002519206162952 331.77219226125015 -2.5208399824912653 0.14101048871798194 EEVEGRPPIGVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EEVEGRPPIGVK 12 1 Q9Y6Q5;K7ERH5;K7EL08;Q9Y6Q5-2 Q9Y6Q5;Q9Y6Q5-2 AP1M2 AP-1 complex subunit mu-2 0 ;; 138.45 6.7707e-05 1567310000.0 1897030.0 1856310.0 1607260.0 1582050.0 1515880.0 2114720.0 1929590.0 1855060.0 2396770.0 2108730.0 False True 1886816.601259845 1918096.1561869103 1833548.2374456397 1782337.367788758 1708918.3326753087 1968534.3839154257 1836248.359950374 1993493.99700381 1806118.1485725788 1974149.0460254163 0.9557619801091518 0.9716065562773195 0.9287790307105482 0.9028382995585689 0.8656480806836239 0.9971559076953714 0.9301467706540801 1.0097991339698191 0.9148843914337994 1.0 20.912799485078132 2.7023024390743418 24.999480497528612 0.9708709192512784 0.9265069315274724 0.25569281838836755 0.03873856402829401 881.6959106664324 607915.6497941688 0.012694240566946171 0.01196865038116142 503.85136455241025 -2.7023024390743418 -0.04436398772380601 EEVFWR ddPTM_BT-474_Trastuzumab_2h_R1 6 EEVFWR 6 0 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 ;;;;; 154.29 0.023318 2320030000.0 2233510.0 2497190.0 2266060.0 2175740.0 2105090.0 2456220.0 2443170.0 2176180.0 2549350.0 2451060.0 False True 2221485.030326292 2580307.4595667673 2585101.551053388 2451188.460916354 2373160.7336540297 2286427.2927199546 2324984.5332842525 2338577.6020181337 1921096.8520398294 2294631.252341961 0.9681228860013938 1.1244976537878308 1.1265869182314001 1.0682276110440867 1.0342231376967082 0.9964247154684949 1.013227955869298 1.0191518134477249 0.8372137571468651 1.0 21.12983090023525 2.271289856392122 0.8349222315368124 0.9470135101704122 1.07760998856448 0.38342173349350706 0.061777778355996245 0.6572663819699761 0.8795410470991201 0.047997985052766166 0.02911563203819751 186.76257638959166 -2.271289856392122 0.13059647839406785 EEVGEEAIVELVENGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEVGEEAIVELVENGKK 17 1 P35579;Q5BKV1;B1AH99 P35579 MYH9 Myosin-9 0 151.04 4.2456e-07 52173000.0 122560.0 95390.0 87561.0 73875.0 79234.0 121000.0 109230.0 119810.0 160000.0 121230.0 False True 121900.15057769605 98564.99848552729 99888.82770614453 83227.56742542566 89323.980243288 112635.55480336232 103946.12760087861 128750.83058285258 120570.14389015759 113492.99760977512 1.0740764024651759 0.8684676637445509 0.8801320769550379 0.7333277750895998 0.7870439773774602 0.9924449717209782 0.9158814181494996 1.1344385406537478 1.0623575588752703 1.0 16.7922437620385 2.107183255410006 1.8451662649887997 1.0733592852160017 0.8684381598176129 0.3881825893131652 0.09651837841051732 0.3287307976567324 2.1539607295977086 0.05517069781069681 0.030857341478084242 127.99212673100031 -2.107183255410006 -0.2049211253983888 EEVNDRPVRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEVNDRPVRR 10 2 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 141.29 2.1247e-05 39385000.0 26997.0 35314.0 33432.0 32655.0 35516.0 33614.0 29486.0 27364.0 40926.0 36795.0 False True 26851.65115164868 36489.40514223619 38138.93500384672 36789.11965180741 40038.752080175414 31290.343298844797 28059.649532541483 29406.04063157651 30840.33568030365 34446.71159821563 0.7795127577007849 1.0593001029487636 1.1071865276632775 1.0680009192434239 1.1623388771382595 0.9083695321577709 0.8145813701994996 0.8536675713654992 0.8953056547174507 1.0 15.072078644412644 2.5452891595100935 8.43093558246561 0.8721797422766657 1.0421143073121553 0.3064202570152321 0.10447639958433502 0.37792688195136087 43.756486306715495 0.03375421962685792 0.031734129473920646 350.9854873561104 -2.5452891595100935 0.16993456503548954 EEVSEILDEMSHK ddPTM_BT-474_Trastuzumab_2h_R1 5 EEVSEILDEMSHK 13 0 Q5TBH8;O15228;Q5TBH6;O15228-2 Q5TBH8 GNPAT Dihydroxyacetone phosphate acyltransferase 0 ;;;; 251.3 2.0382e-18 248520000.0 344102.0 393511.0 356035.0 316096.0 380455.0 427259.0 418581.0 395436.0 563706.0 357041.0 False True 342249.3930653259 406608.7757525774 406161.6332883035 356113.721189947 428903.6891165426 397723.5909895022 398332.63789529755 424945.44230332103 424788.2095734074 334254.3377018212 1.0239190773662805 1.2164652179182835 1.215127486694365 1.0653974564351831 1.2831656638040563 1.1898831103406657 1.1917052165547029 1.2713236430230048 1.2708532445504086 1.0 18.35058675708992 3.23340272321957 24.99994476978436 1.2171155662174422 1.1424514611786483 0.10006694814834416 0.09458458696409866 261.19152947552186 1265975.7875672437 0.025643287272075693 0.0315485717752941 1711.601755399156 -3.23340272321957 -0.07466410503879395 EEVSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEVSLR 6 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 148.62 0.02499 1472920000.0 1291630.0 1801400.0 1577980.0 1437720.0 1525400.0 1630150.0 1611490.0 1430200.0 1928590.0 1582880.0 False True 1284676.0075935822 1861358.5100307048 1800145.8679519622 1619735.2045872477 1719650.6482458482 1517461.5674603404 1533536.072210382 1536928.786408446 1453314.836281993 1481859.2432282525 0.8669352460189783 1.2560967032035428 1.2147887028934796 1.0930425490741147 1.1604682807117117 1.0240254426287667 1.0348729673336252 1.03716246562003 0.9807374370563866 1.0 20.498976986778523 2.726299378620109 22.66766479462052 1.0208672223830118 1.1298845742778725 0.2089631400419164 0.09853465032924431 326.88867055210267 604324.5600172755 0.030725452038062352 0.029211972664404676 532.475191757556 -2.726299378620109 0.10901735189486073 EEVTELLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EEVTELLAR 9 0 P19388;A0A087WVZ9;A0A0A0MQR7;A0A087WWX0 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 0 ;;; 155.1 0.00017241 251388000.0 285361.0 347496.0 311095.0 292351.0 311371.0 345133.0 322771.0 307781.0 400591.0 335343.0 False True 283824.6480825879 359062.19429423223 354894.4719137862 329362.6066245766 351022.2512094918 321274.7680656928 307157.3336250404 330749.1811002504 301870.71569438826 313941.1226384135 0.9040696729924333 1.143724629881596 1.1304491394156775 1.0491222171105155 1.1181149135845674 1.0233599388498267 0.9783915246388846 1.0535388875486562 0.9615520042656931 1.0 18.260134492017993 2.5460649403116924 7.36383088576399 1.0065742124276307 1.0753306780316223 0.19529583366783454 0.06681087232111385 0.4515338434000186 42.56821016548912 0.0210225290960206 0.01972187860994098 351.6130135002056 -2.5460649403116924 0.06875646560399162 EEVVGGDDS(ph)DGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EEVVGGDDSDGLR 13 0 P25490 P25490 YY1 Transcriptional repressor protein YY1 1 EEVVGGDDS(1)DGLR;EEVVGGDDS(1)DGLR 285.87 8.1851e-33 1417200000.0 1886030.0 2101400.0 1905820.0 1773510.0 1712120.0 2059250.0 1862230.0 1782120.0 2042730.0 1925140.0 True False 1875875.8240376334 2171343.828676876 2174142.8903155974 1998036.1841579229 1930148.3334697045 1916898.8944530901 1772146.820490561 1915110.8438219968 1539326.562679633 1802275.9170047252 1.0408372027493031 1.2047788067242888 1.2063318772682114 1.1086183670913938 1.0709505216479258 1.063599017423959 0.9832827503103759 1.062606910380735 0.8541014991965835 1.0 20.78138846483873 2.5837666209127845 0.8287037172169874 0.9663800616594068 1.155146127216617 0.55597523575591 0.065669261152724 0.4713970822836407 0.6707001357086333 0.044744187443431775 0.0360585236082685 383.5011061237668 -2.5837666209127845 0.1887660655572102 EEVVLLTHGDSVDK ddPTM_BT-474_Trastuzumab_2h_R1 6 EEVVLLTHGDSVDK 14 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;;;;; 262.92 1.3798999999999999e-24 3178790000.0 4974960.0 4528130.0 4031200.0 3731800.0 3722480.0 5426780.0 5043610.0 4820790.0 6606110.0 5314550.0 False True 4948175.368130019 4678846.069737614 4598757.920181466 4204245.497369926 4196515.763132435 5051639.471866033 4799631.315838754 5180541.829275613 4978122.707838801 4975370.868984826 0.9945339751405595 0.9404014681406625 0.924304547596428 0.8450114791598963 0.8434578795507343 1.015329229697558 0.9646780998293842 1.0412373199292075 1.0005530922068804 1.0 22.246372638880587 2.715539327917426 24.604092148032098 1.00641688253062 0.9084914171256506 0.5283483869420977 0.04476636529792104 546.5258898440433 584100.8462662097 0.01568025584975673 0.0147926568854 519.4447101482237 -2.715539327917426 -0.09792546540496927 EEWYAR ddPTM_BT-474_Trastuzumab_2h_R1 6 EEWYAR 6 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 ;;;;; 162.47 0.019043 5118080000.0 3864790.0 5250010.0 4802460.0 5126600.0 4420160.0 4841920.0 4773700.0 4028560.0 5063150.0 5129590.0 False True 3843982.400058532 5424753.409151941 5478604.624269378 5775627.034357859 4983041.175659091 4507209.4670536835 4542777.893695082 4329191.603813185 3815404.5252340715 4802215.174537052 0.800460258515822 1.129635639384881 1.1408494674121994 1.2027005922146432 1.037654706119967 0.9385688277677378 0.9459754985121046 0.9014988805099788 0.7945092809386426 1.0 22.19526861768272 2.73378354770649 2.8981114830920642 0.9074053353008673 1.0815932025278672 0.30314128560935194 0.11087736524239841 0.3109754607471491 5.275822056169193 0.03776344492202301 0.03758377391220449 541.730824559008 -2.73378354770649 0.17418786722699986 EEYEAHQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EEYEAHQDR 9 0 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 0 85.958 0.014463 74738000.0 98998.0 131910.0 99028.0 95209.0 92300.0 112970.0 108480.0 109810.0 188500.0 122670.0 False True 98465.00576771179 136300.5446087212 112970.28163319368 107262.44963800121 104053.85789503863 105160.64980277541 103232.40796615693 118004.57980388173 142046.7007705919 114841.09557692907 0.8574021805787514 1.1868621064958143 0.9837095428745524 0.9340075440690034 0.9060681402619992 0.9157057347326595 0.8989152136484471 1.027546621799977 1.2368978200442062 1.0 16.809279473381405 1.4660913594741214 6.2457589113537955 1.1241180407798572 0.9612020914635462 0.2975213650272077 0.10009319163842914 0.1787037793265292 16.848432152013913 0.05901519252165047 0.025000427698897373 29.24767575907608 -1.4660913594741214 -0.16291594931631104 EEYEGPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EEYEGPNK 8 0 P23246 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 96.253 0.021106 115930000.0 115020.0 106370.0 107220.0 104010.0 97244.0 127080.0 120050.0 123230.0 160390.0 121610.0 False True 114400.74509992321 109910.46114797705 122315.64402705319 117177.65533561452 109627.44698965465 118295.2587141428 114242.72286446474 132426.0483492609 120864.0336158898 113848.74568444092 1.004848533131953 0.9654077476849876 1.0743697112489963 1.029239756935052 0.9629218691044115 1.0390563198827545 1.003460531582103 1.1631752950209169 1.0616193695352028 1.0 16.796758871270985 1.775050823230303 24.999999975957017 1.092084621583594 1.0118810773798208 0.24011859759838072 0.04907482065672247 44.331363769516486 30385.115451985912 0.021709147605492998 0.01204935344576385 59.57318548585526 -1.775050823230303 -0.08020354420377318 EEYEGPNKKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEYEGPNKKPR 11 2 P23246 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;; 196.11 3.4638e-08 9348930000.0 6946060.0 6734400.0 6381990.0 6021430.0 6137350.0 7655080.0 7822590.0 7501680.0 11187000.0 7548890.0 False True 6908663.184739823 6958550.432969226 7280518.718748498 6783742.420608866 6918905.143576547 7125902.337720023 7444181.436504232 8061493.454359198 8430113.748119954 7067113.377270119 0.9775792202457205 0.9846382902742068 1.0301969602135932 0.9599028710119953 0.9790284624313156 1.0083186666622592 1.0533553148371544 1.1407052673425748 1.1928652192327405 1.0 22.752689623581247 2.0429905282622403 2.530030243414292 1.1247096222180422 0.9886271816273684 0.5523076026166545 0.0486848599200341 0.18415339688329702 2.2673765053419808 0.023152382532384816 0.013490544230648988 110.40545407816752 -2.0429905282622403 -0.13608244059067376 EEYLLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EEYLLLR 7 0 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;; 110.61 0.015737 755240000.0 779450.0 978930.0 946350.0 896750.0 842560.0 947660.0 913420.0 786650.0 1146520.0 925020.0 False True 775253.5278050359 1011513.0932743174 1079587.854178341 1010278.4580541499 949855.0217556192 882150.494751688 869234.3849967459 845353.817527761 863975.5085808954 865984.4316505354 0.8952280196624671 1.168049974462485 1.2466596565953099 1.166624273058345 1.0968499975747017 1.018667844952294 1.0037529004303416 0.9761766916716352 0.997680185698245 1.0 19.723981563381354 2.7468345797918783 2.5909756357163922 0.992498523020437 1.131751145276009 0.3151867842345145 0.08507255278555823 0.32654615323196856 4.353871895092817 0.029976336367142333 0.030035622163796277 558.2575172380433 -2.7468345797918783 0.139252622255572 EFADFEYR ddPTM_BT-474_Trastuzumab_2h_R1 6 EFADFEYR 8 0 Q8ND56-2;Q8ND56;Q8ND56-3;A0A0G2JQ95;A0A096LP11;A0A140TA66 Q8ND56-2 LSM14A Protein LSM14 homolog A 0 ;;;;; 160.52 0.00082099 4537490000.0 4370010.0 5383720.0 4949310.0 4965850.0 4692160.0 5127310.0 5161840.0 4647410.0 5728260.0 5027520.0 False True 4346482.351713752 5562913.865672539 5646129.827826295 5594526.100839934 5289678.763388773 4772871.128089484 4912142.079056291 4994223.333269808 4316607.077751465 4706659.3693235805 0.9234750192551981 1.1819240419074593 1.199604514536545 1.188640532880533 1.1238711681293778 1.0140676759396376 1.0436578672066175 1.061097254205493 0.9171275716032596 1.0 22.166272015304394 2.7634405894092953 5.469127561349663 1.0178426234240496 1.1353381599715318 0.3270723685354826 0.08191995019950116 0.22615437501114924 21.43683021819534 0.025776346286142303 0.02658171013493113 580.0168219886164 -2.7634405894092953 0.11749553654748213 EFAGEDTSDLFLEER ddPTM_BT-474_Trastuzumab_2h_R1 4 EFAGEDTSDLFLEER 15 0 O14980 O14980 XPO1 Exportin-1 0 ;;; 192.86 2.7146e-07 636318000.0 608096.0 722414.0 664170.0 713651.0 678876.0 727540.0 723950.0 688720.0 797930.0 769990.0 False True 604822.0787018168 746459.1132815145 757679.3629308698 803999.143427715 765326.8345866988 677246.8722449436 688929.7727424346 740115.7836492968 601290.8432142091 720848.5789783956 0.8390417853899159 1.035528313504363 1.0510936485505344 1.115350944531461 1.0617026334037294 0.939513362438412 0.9557205116763953 1.0267285047550587 0.8341430652001469 1.0 19.459336714069977 2.7315186294238902 24.463518621667834 0.9593732409028597 1.0283402716266685 0.14449285208946927 0.08207607903453974 846.8010454826515 2941733.409067898 0.02666718165148451 0.02564674710286479 538.9129619982984 -2.7315186294238902 0.06896703072380883 EFALHK ddPTM_BT-474_Trastuzumab_2h_R1 4 EFALHK 6 0 A0A087WW66;Q99460-2;Q99460;C9J9M4;F8WCE3 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;;; 77.72 0.071677 1389140000.0 1767390.0 2051360.0 1822490.0 1737800.0 1673380.0 1943600.0 1981270.0 1748190.0 2698690.0 2129600.0 False True 1757874.5686154878 2119638.2775266916 2079080.7506329424 1957805.3018193524 1886475.0240996704 1809243.5067422735 1885428.4009136043 1878648.8149289466 2033634.0100933048 1993687.1047577113 0.8817203885306358 1.0631749949470064 1.0428320199651433 0.9820022897009612 0.9462242192357109 0.9074861859841076 0.9456992506066977 0.9422987240303462 1.0200366974538104 1.0 20.92700757593314 3.433786542079296 5.136521007986386 0.9534446172278693 1.004201172720517 0.06817555028883204 0.05379749749093203 0.3514971406093956 21.59735106403418 0.014671079781023702 0.02039782490422783 2715.1044533462305 -3.433786542079296 0.05075655549264757 EFAPS(ph)DEELDSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFAPSDEELDSYR 13 0 I3L0X5;O75391;I3L4C3 I3L0X5 SPAG7 Sperm-associated antigen 7 1 EFAPS(1)DEELDSYR 141.34 3.7428e-06 0.0 78193.0 98749.0 75869.0 99116.0 92503.0 100600.0 89616.0 82337.0 102010.0 91270.0 True False 77772.01757605908 102035.80076996902 86550.69573483022 111664.07543740756 104282.70874176329 93645.75878692756 85280.93171363477 88481.4050388144 76871.0023639686 85445.07045982161 0.9101989986962373 1.1941683729776873 1.0129396028238808 1.3068521663858277 1.220464892597866 1.0959761433043949 0.9980790144439752 1.0355355149530896 0.8996540344608324 1.0 16.382709641160464 2.3070205013386897 3.5459069738483744 0.9901573785096945 1.1377363630114967 0.2885522323352506 0.10796242358710556 0.30632488797627905 7.737006087288239 0.040486770839011754 0.032012371382839994 202.77784407268678 -2.3070205013386897 0.14757898450180218 EFAPSDEELDSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFAPSDEELDSYR 13 0 I3L0X5;O75391;I3L4C3 I3L0X5 SPAG7 Sperm-associated antigen 7 0 211.37 5.2165e-08 251670000.0 123530.0 236570.0 159780.0 167770.0 141850.0 159210.0 143690.0 125390.0 173590.0 141180.0 False True 122864.92820547329 244444.08944041494 182275.63516734357 189009.66479815418 159913.75668917893 148204.18744002722 136739.16575089478 134747.23851751848 130811.0704868278 132169.77152972078 0.9295993084004452 1.8494704697696118 1.379102294402889 1.4300521413525475 1.2099117282140373 1.1213168164303047 1.034572157977488 1.0195011836516499 0.9897200318411123 1.0 17.012032731079337 2.912277836436089 1.5124346454754631 1.0144044089444875 1.435915233229377 0.4015916333628313 0.20904223863964438 0.34986248158512406 1.6288784613001845 0.07520186728572277 0.08344835940209681 817.1049405643518 -2.912277836436089 0.4215108242848895 EFCENLSADCR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFCENLSADCR 11 0 P30153;B3KQV6;C9J9C1 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ;;; 213.81 2.9332e-09 1718440000.0 1046280.0 1063610.0 954380.0 956920.0 892400.0 991880.0 953800.0 920270.0 1333560.0 1016880.0 False True 1040646.9447326366 1099011.6158841788 1088748.4083803322 1078065.973884783 1006041.8503307964 923313.6702343721 907661.050130166 988945.2204363723 1004922.0067884891 951981.8478052311 1.09313738190683 1.1544459785844876 1.1436650928695886 1.1324438342708272 1.0567867997170317 0.9698857938972758 0.9534436525473196 1.038827812438188 1.0556104710455458 1.0 19.86057453921893 3.084765103145387 3.3215456256505993 1.0047285197072924 1.1338511225387604 0.7823849397659501 0.031576552071522476 0.11507870391793366 2.5402379566425304 0.010296572937215318 0.012463633363443267 1215.5283799889507 -3.084765103145387 0.12912260283146804 EFCPNEQNWR ddPTM_BT-474_Trastuzumab_2h_R1 3 EFCPNEQNWR 10 0 Q8WW22-3;Q8WW22;Q8WW22-2 Q8WW22-3 DNAJA4 DnaJ homolog subfamily A member 4 0 ;; 154.81 3.2153e-05 508510000.0 541190.0 491251.0 472688.0 467328.0 436329.0 538325.0 591881.0 470767.0 834049.0 598993.0 False True 538276.2931718613 507601.99256749934 539238.3617222512 526491.6768837803 491892.91182539874 501111.8598307444 563249.4548250076 505898.02404638915 628508.7996340129 560764.7539162927 0.9598968005970855 0.9051959650147179 0.9616124372230876 0.93888154204922 0.8771822914869313 0.8936222477091474 1.0044309149092594 0.9021573137635293 1.1208065329438173 1.0 19.097036148057505 1.2473877065601464 24.99988056548998 1.0604032789339128 0.9301660971924834 0.5711567365177843 0.04506870074449323 109.35132452716877 309708.3400183087 0.02925779376864773 0.010334650169595288 17.67615114884573 -1.2473877065601464 -0.1302371817414294 EFDEDS(ph)DEKEEEEDTYEK ddPTM_BT-474_Trastuzumab_2h_R1 5 EFDEDSDEKEEEEDTYEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK 282.86 1.2497999999999999e-39 6502380000.0 8053900.0 4320930.0 4084950.0 2997440.0 3733330.0 5767730.0 5315320.0 5703350.0 9391050.0 5330750.0 True False 8010538.697272409 4464749.542992652 4660075.452978088 3376915.5966655514 4208747.446319442 5369020.400876002 5058197.665105765 6128962.938024484 7076751.5611229 4990536.9711153135 1.605145647379538 0.8946431153268953 0.9337823725082288 0.6766637771067067 0.8433456100373999 1.0758402215936502 1.0135577983655994 1.2281169287990963 1.4180340917384984 1.0 22.250763624142504 1.7683146376087395 3.3479634756087053 1.2464484039380253 0.9788675983233327 0.12252906292504229 0.24712895073353994 0.3962691774497753 8.811223048043159 0.1363744007946265 0.06736960340931408 58.656296367447815 -1.7683146376087395 -0.26758080561469255 EFDEDSEDRLVNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFDEDSEDRLVNEK 14 1 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4 Q9UHD8 SEPT9 Septin-9 0 ; 215.87 5.7834e-12 1602800000.0 1276270.0 1173240.0 1010520.0 1034290.0 983600.0 1271750.0 1240110.0 1223090.0 1694300.0 1321260.0 False True 1269398.704126926 1212290.5841614443 1152792.4324027046 1165231.0079518573 1108855.6297460452 1183836.9158774863 1180121.1416197536 1314363.1865251765 1276762.4674568374 1236936.0556124025 1.0262444031502107 0.980075387616738 0.9319741527236518 0.942030109531374 0.8964534785082765 0.9570720414414414 0.9540680266090876 1.0625959042599338 1.0321976319339459 1.0 20.238339490305098 1.752159332103415 22.817598697644588 1.035539285781727 0.9527445226573215 0.5041702195366724 0.03448310635402695 1.7453874138435483 2936.604357171402 0.01666055164383162 0.009236868375122402 56.51442744994572 -1.752159332103415 -0.08279476312440548 EFDLTKEEDLAALR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFDLTKEEDLAALR 14 1 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;C9JMB8;A0A2R8YE78;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8YE54;A0A2R8Y4G4 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 206.63 9.6444e-09 100310000.0 159450.0 162250.0 174710.0 149650.0 194900.0 296510.0 210850.0 192040.0 322460.0 210500.0 False True 158591.53891656036 167650.39316780365 199307.6493934569 168595.67465603972 219719.35973719417 276012.9616094626 200650.37997478052 206370.9999593611 242994.05374262627 197065.709781883 0.8047647614193927 0.8507334601913397 1.0113766094266494 0.855530243402799 1.114954803554534 1.4006138455795294 1.0181902280049895 1.0472192254440278 1.2330610638024133 1.0 17.588317237975005 3.2112761992780325 7.697728851800268 1.1364437506309746 0.8877196709160421 0.5188799478046533 0.12027257079706673 0.16424564455027646 36.073764817530765 0.035700290725572965 0.04352776556514842 1626.582888602029 -3.2112761992780325 -0.2487240797149325 EFDQLDQENDDGWAGAHEEVDYTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFDQLDQENDDGWAGAHEEVDYTEK 25 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 0 106.11 4.7571e-06 0.0 36993.0 32825.0 34377.0 26181.0 24805.0 35702.0 34479.0 30828.0 39812.0 33932.0 False True 36793.83379830868 33917.56028186848 39216.98278975947 29495.5119156016 27963.769719246284 33234.00477346812 32811.1190474292 33128.54190141209 30000.866053468446 31766.430709353226 1.158261503627954 1.0677170687571733 1.234541681707178 0.928511993855105 0.8802930985574248 1.046198897116974 1.0328865508257552 1.042878949936853 0.9444204269582943 1.0 14.955215376834122 3.731952010355565 24.989676394477936 0.9887918820038464 1.1449277845438406 0.6054178257849329 0.06311526115487341 383.98052035749475 1451979.1028314724 0.01758550378320458 0.027935152530737965 5394.510097555871 -3.731952010355565 0.1561359025399942 EFDRHS(ph)GSDR ddPTM_BT-474_Trastuzumab_2h_R1 3 EFDRHSGSDR 10 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 EFDRHS(0.849)GS(0.151)DR;EFDRHS(0.963)GS(0.037)DR;EFDRHS(0.79)GS(0.21)DR 94.09 0.0050515 1470623000.0 1174355.0 1434278.0 1194228.0 1421101.0 1357796.0 1416005.0 1357684.0 1276054.0 1628092.0 1506808.0 True False 1168032.4031631055 1482017.07619064 1362364.9219841429 1601012.2408912308 1530703.2723125895 1318119.9072672315 1292007.6380634566 1371279.6291509173 1226870.5419150898 1410642.2233967672 0.8280146331863883 1.0505974169850134 0.9657763672376298 1.1349527288613697 1.0851109139684763 0.9344112103019674 0.915900301745085 0.9720959761497381 0.8697248115548655 1.0 20.42792069759811 2.7016226757641246 23.94311665750057 0.9378048157245694 1.0191490473845415 0.16670785394745513 0.08264490710252652 596.0710630225591 386371.0626661971 0.026602345305209385 0.025081663820124434 503.06334678328517 -2.7016226757641246 0.08134423165997207 EFDSDS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFDSDSLR 8 0 Q12955;D6RFK6;B1AQT1;A0A087WZ26;Q12955-4;Q12955-5;Q12955-6;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 1 EFDSDS(1)LR;EFDS(0.003)DS(0.997)LR 104.82 0.004726600000000001 581590000.0 532150.0 308440.0 352380.0 408860.0 326170.0 384130.0 373130.0 359000.0 562970.0 423560.0 True False 529284.9635274231 318706.23894408275 401992.0410581329 460621.6340786399 367705.8161389462 357575.99724475644 355080.2764049787 385790.4029650628 424233.5869115119 396528.0381720396 1.3347983309512779 0.803742001229702 1.0137796129405674 1.1616369833570062 0.9273135333229867 0.901767246758013 0.8954733139221843 0.972920867698344 1.069870339729802 1.0 18.597063355754745 4.756076293538329 24.68693051277198 0.9711623919205726 1.3347986846573456 0.57074653061316 0.09443071771342419 2358.304809178502 3323775.6561832447 0.02279358326170974 0.6983617233271313 57026.44431847269 -4.756076293538329 0.363636292736773 EFEDAFPADFIAEGIDQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFEDAFPADFIAEGIDQTR 19 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 113.72 0.00039894 29429000.0 34204.0 31022.0 26785.0 25252.0 27394.0 31985.0 28931.0 29297.0 37022.0 28313.0 False True 34019.84946442163 32054.54851680498 30556.095180606422 28448.900610854125 30882.463523041046 29773.952234591263 27531.497002847373 31483.290907151626 27898.424169383827 26506.04010002116 1.2834753639565524 1.2093299638816812 1.1527974403306673 1.0732987841073784 1.165110420360995 1.123289337910852 1.0386876688843987 1.1877779852572732 1.0525308218092357 1.0 14.694033532787993 7.9999999999999964 0.46950174345649887 1.0915351163005629 6.222811231806428 0.5905027607760489 0.05331702297406943 69.29892065641596 0.7973308635484487 0.029478572449124087 344.9231289163696 99999999.99999918 -7.9999999999999964 5.131276115505866 EFEDRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFEDRDR 7 1 Q13951-2;A0A494C0A9;Q13951;J3KS23 Q13951-2 CBFB Core-binding factor subunit beta 0 ;;; 118.05 0.0046451 1379770000.0 1437870.0 1727910.0 1541830.0 1653920.0 1508950.0 1621120.0 1614990.0 1578280.0 1995860.0 1743690.0 False True 1430128.667682374 1785422.4398063489 1758906.2621733942 1863306.1024197596 1701105.8382526396 1509055.7901060055 1536866.763839081 1696059.2679434486 1504007.04615381 1632406.2113518838 0.8760862692981345 1.093736612486756 1.0774929977243524 1.1414475695217154 1.0420848845238477 0.9244364421134338 0.9414732394128288 1.0389933927896846 0.9213436188216048 1.0 20.638568674538774 2.8860166332386092 6.814163636398467 0.9719116525600383 1.057302487547413 0.22992906317950668 0.07259804775798723 0.3700562682338053 19.74170366701782 0.022275528057591813 0.023695229094480685 769.1598981214568 -2.8860166332386092 0.08539083498737476 EFEEDLTGIDDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFEEDLTGIDDRK 13 1 A0A0A0MTB9;H0YAK8;A0A0A0MQT0;P09455;P09455-2;P09455-3 A0A0A0MTB9 RBP1 Retinol-binding protein 1 0 145.6 6.7154e-05 84802000.0 83668.0 84419.0 68086.0 74140.0 91048.0 72527.0 72944.0 85244.0 135510.0 83576.0 False True 83217.5407843887 87228.83538263675 77671.91698587895 83526.11639825457 102642.42311622397 67513.37920019381 69415.4200468598 91605.3401402613 102115.37624097019 78242.10812698651 1.0635902172948495 1.1148579386570827 0.9927124772739745 1.06753407337507 1.3118565638547965 0.8628778137038431 0.8871874967146712 1.1707933532617287 1.3051204611618785 1.0 16.255657621815256 1.6010034769271118 24.999999851537225 1.17849921926702 1.0467727756840763 0.12616842386355964 0.1363007246974355 1.1408590067872157 4142.162557489579 0.07164046802486795 0.034309700123756066 39.90280969365904 -1.6010034769271118 -0.13172644358294372 EFEEESKQPGVSEQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFEEESKQPGVSEQQR 16 1 O94776 O94776 MTA2 Metastasis-associated protein MTA2 0 121.19 0.00099567 0.0 132720.0 120660.0 123590.0 119880.0 117110.0 140000.0 150180.0 127330.0 208460.0 155630.0 False True 132005.4502665782 124676.09515948982 140990.3977364626 135056.79570842654 132023.2643346477 130322.12952455135 142915.2196566872 136832.01116863897 157087.82622088908 145697.56015845368 0.9060237530608982 0.8557184830267445 0.9676922357733938 0.9269667629406096 0.9061460205034699 0.8944702257389846 0.9809033143812392 0.9391510126856417 1.0781774660471177 1.0 17.152617192767366 1.5582911019207393 1.579354498909803 1.0329485748318694 0.9132132426021775 0.5676750845240209 0.03971032062906078 0.25549056786751156 1.248957011556127 0.032527307986064236 0.011173505391685485 36.16521921577805 -1.5582911019207393 -0.1197353322296919 EFEFLMR ddPTM_BT-474_Trastuzumab_2h_R1 3 EFEFLMR 7 0 P85037 P85037 FOXK1 Forkhead box protein K1 0 ;; 131.04 0.0081542 222666000.0 207218.0 270156.0 256741.0 244167.0 229530.0 241912.0 245814.0 221402.0 312280.0 247621.0 False True 206102.3613120839 279147.9791472493 292887.9011672236 275078.51716499374 258759.284969103 225189.19283959465 233923.03771932938 237924.14149657564 235322.77833761479 231817.61578099625 0.8890711804524546 1.204170693442759 1.2634410900158766 1.18661610869498 1.116219248901081 0.9714067331808657 1.0090822344593613 1.0263419399557123 1.0151203459875542 1.0 17.822630675096338 2.872029719840309 4.709660584488218 1.0085476138690421 1.1499391658709366 0.3137657755357922 0.0933944458394873 0.2697764199152689 9.18145623424974 0.029248255527711875 0.031259517582690986 744.7829394917742 -2.872029719840309 0.14139155200189446 EFEMWAPDMYVVTYVGDKDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFEMWAPDMYVVTYVGDKDSR 21 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 124.31 2.2783e-05 297350000.0 190750.0 201160.0 189390.0 177020.0 151560.0 237210.0 211250.0 190640.0 300850.0 254380.0 False True 189723.0231943171 207855.48899621225 216054.46579260947 199430.7138497303 170860.2676335 220812.23103227766 201031.03044663172 204866.52485030482 226709.54868346156 238145.25061432525 0.7966693549625826 0.8728097178508629 0.9072381886066178 0.8374330931869268 0.717462419228369 0.927216606095083 0.8441530113577626 0.8602587048107244 0.9519801385861617 1.0 17.861482251425606 1.147469396054088 2.3798241923088863 1.0001447383516828 0.8447031857573277 0.4877283859845355 0.054852569341304856 0.2316931403452367 2.402021180614684 0.051062500639091866 0.014243108783019728 14.043307194476164 -1.147469396054088 -0.1554415525943551 EFEPLLNWMK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFEPLLNWMK 10 0 P14625 P14625 HSP90B1 Endoplasmin 0 131.44 0.00058181 103260000.0 219900.0 241550.0 280740.0 235010.0 151580.0 208860.0 251970.0 218230.0 413250.0 247550.0 False True 218716.08283318672 249589.84572994127 320265.75176417595 264762.24190388154 170882.81451495056 194421.99980355578 239781.24848112586 234515.43074948646 311410.0747662975 231751.14706178205 0.9437540465544262 1.0769735075503366 1.381938151437917 1.1424419911643378 0.7373547733483075 0.8389257281722331 1.0346496728113415 1.0119278101651314 1.343726142090159 1.0 17.822216953983407 6.783679852319211 10.085329591872755 1.0472246413677142 0.49343153228824244 0.0 0.1906949689191792 0.0 0.0 0.04408006147265096 0.0 6076868.692499965 -6.783679852319211 -0.5537931090794718 EFESVLVDAFSHVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFESVLVDAFSHVAR 15 0 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 0 ;;; 200.44 6.9155e-09 558437000.0 723002.0 833076.0 746605.0 764307.0 731673.0 847770.0 842763.0 704749.0 993440.0 812310.0 False True 719109.437565073 860804.4310549228 851720.4943930063 861068.187833838 824847.219584361 789165.6553359204 801995.334022698 757340.9490229101 748620.0234139882 760467.6803464203 0.9456147265028975 1.131940848114407 1.1199956505778355 1.1322876830762758 1.0846578242596892 1.0377372710651256 1.0546080454824331 0.9958884099820181 0.984420564820013 1.0 19.53652740957297 2.0857430501027605 1.2642066082128895 0.989601179096315 1.0887912479402366 0.3345276228133629 0.05182915431788539 0.49116025851804285 1.4718968667853907 0.035774352422806854 0.017876609147967577 121.82685982546546 -2.0857430501027605 0.09919006884392167 EFESWLER ddPTM_BT-474_Trastuzumab_2h_R1 2 EFESWLER 8 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 0 ; 115.49 0.0057067 97338000.0 71248.0 87766.0 80237.0 77211.0 72351.0 84892.0 79619.0 71106.0 88461.0 77376.0 False True 70864.408684397 90687.2382543326 91533.67216749367 86985.90468337772 81564.47099202542 79023.61585427307 75767.52479588354 76412.29078895196 66660.97186667011 72437.79743507349 0.9782794506957956 1.251932574780676 1.2636175506238432 1.200835858673696 1.1259932504868364 1.0909168783755814 1.0459667118370697 1.0548676726047728 0.9202512255624394 1.0 16.144455059495645 2.2677493828542263 0.98424893703647 0.9822322178427075 1.1828031606470775 0.4842317525807168 0.07945727253341349 0.4690738432732465 0.8719549386939582 0.05737446091618828 0.033360909844888265 185.24623194780244 -2.2677493828542263 0.20057094280436993 EFETAETLLNSEVHMLLEHR ddPTM_BT-474_Trastuzumab_2h_R1 9 EFETAETLLNSEVHMLLEHR 20 0 O15514;E9PHV4 O15514 POLR2D DNA-directed RNA polymerase II subunit RPB4 0 ;;;;;;;; 323.3 3.364699999999998e-67 375176600.0 106239.4 134374.7 123101.1 130007.6 118227.0 135835.9 135174.4 74939.4 151174.8 117022.5 False True 105667.418874707 138847.28065827844 140432.6648660575 146466.54883002036 133282.5076636699 126445.88395631446 128635.49785564601 80531.75856256261 113919.79617853627 109554.02386199721 0.9645233935707731 1.2673864068487461 1.281857661777512 1.3369344517598098 1.2165916227008051 1.1541874912380723 1.1741741044371434 0.7350871809510775 1.0398504058786424 1.0 16.741282949172398 1.8698527664188151 7.090206018441831 0.903896773031336 1.212080840807174 0.520428393925146 0.12024256160107345 0.17572499245500564 9.278962207089476 0.05130080498403789 0.0316447494103421 74.10589664930328 -1.8698527664188151 0.30818406777583796 EFEVYGPIKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFEVYGPIKR 10 1 P08621;P08621-2;M0QYR1;P08621-3 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;; 142.0 5.8577e-05 4133790000.0 3599530.0 4944760.0 3833040.0 4310210.0 4206670.0 5487670.0 5497830.0 5227900.0 7566630.0 5810850.0 False True 3580150.530425376 5109343.347429455 4372698.71461907 4855882.144064209 4742364.489613452 5108320.289485674 5231878.959149849 5618032.444738301 5701935.424147391 5439996.578081018 0.6581163203025927 0.9392181178966472 0.8038054163926622 0.892625955617263 0.8717587265994827 0.939030055656332 0.9617430606905668 1.0327272019571905 1.0481505534620708 1.0 22.37517431330216 6.598741535936616 0.23866472523127258 1.0534253309709927 8.285901490707796e-12 0.7029825247456434 0.060414569634476646 14.0304385310209 0.33329801376537777 0.08349151246809 5.098423936208723 3969552.370042241 -6.598741535936616 -1.0534253309627069 EFFNGKEPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 EFFNGKEPSR 10 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;;; 150.06 2.0292e-05 11127480000.0 10090460.0 13557010.0 12093470.0 10777190.0 11571890.0 12440490.0 13258960.0 12212620.0 20168840.0 13123760.0 False True 10036134.0845155 14008246.882464394 13796125.457674379 12141581.148989802 13045501.59953432 11580508.208063481 12617573.450654075 13123987.718827788 15198499.630609771 12286190.400983788 0.8168629784307982 1.1401619562515257 1.122896927966352 0.9882299356208571 1.0618020048337955 0.9425629776286227 1.0269719936656485 1.0681901623286674 1.2370392395508365 1.0 23.550534310466364 1.5149541834073736 4.723847378777891 1.1285528028862106 1.022424643615906 0.13830411691158673 0.10199657262920613 0.2924145237739974 14.307586157611754 0.0589658548715829 0.02500272681128323 32.73061633689521 -1.5149541834073736 -0.10612815927030472 EFFSQYGDVMDVFIPKPFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFFSQYGDVMDVFIPKPFR 19 1 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;K7EN94;A0A0A0N0M3;A0A087WXQ5;Q13148-4;A0A087WV68;A0A087WXV3;A0A087WX67;A0A087WW61;A0A087WZC9;A0A087WZM1;A0A1W2PNU8;A0A087WYE7 Q13148 TARDBP;TDP43 TAR DNA-binding protein 43 0 ; 250.47 2.3388e-25 1043200000.0 1617930.0 1882830.0 1558970.0 1542320.0 1615160.0 1849100.0 1712020.0 1713950.0 2072620.0 1795310.0 False True 1609219.2446489236 1945498.8583552323 1778459.425189847 1737577.5538623675 1820841.0521966487 1721276.0693132025 1629203.052048488 1841853.6522617512 1561850.5726851153 1680731.7787577806 0.9574515487761459 1.1575308344518478 1.0581458907763952 1.0338220386042807 1.0833620659820107 1.0241229987246316 0.9693414931754446 1.095864120343494 0.9292681868843287 1.0 20.680658078353233 2.585973636800634 6.002445635865525 1.0127583767559267 1.061999599550595 0.15838334407210497 0.06104152134442381 0.48659660243997976 23.034953866573254 0.01914963126641558 0.01796477368522426 385.4549584866984 -2.585973636800634 0.04924122279466836 EFFVTSAPWSVIDQQAIHPELNGATYR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFFVTSAPWSVIDQQAIHPELNGATYR 27 0 P56545;P56545-3;P56545-2 P56545 CTBP2 C-terminal-binding protein 2 0 ; 231.9 2.2003e-35 369180000.0 146025.0 167425.0 167282.0 164330.0 170456.0 180070.0 186498.0 160185.0 179372.0 182876.0 False True 145238.8176249026 172997.6399144503 190833.8515587903 185134.16115086543 192162.56122813304 167622.1847391857 177476.37924845432 172138.8181029486 135168.1740616584 171204.69711197942 0.84833430434392 1.010472509415429 1.1146531303050178 1.0813614595502319 1.1224140719833509 0.9790746840873734 1.0366326522710578 1.005456164502065 0.7895120656254502 1.0 17.385362757993626 1.40674305837615 7.863922448565338 0.8937075840221685 1.0323007310875598 0.26256029959380756 0.08755918040046923 0.30354766374557857 28.081512141868227 0.05713954247424798 0.02132790183123706 25.511914947777445 -1.40674305837615 0.13859314706539128 EFGGGHIKDEVFGTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFGGGHIKDEVFGTVK 16 1 Q12792;Q12792-3;Q12792-4;F8VS81;F8W1Q9 Q12792 TWF1 Twinfilin-1 0 ; 240.92 4.1961e-20 924050000.0 2912400.0 2650200.0 2489400.0 2323940.0 2322980.0 3121200.0 3050900.0 2870800.0 4306200.0 3320600.0 False True 2896719.9619980594 2738410.30492027 2839885.8817473063 2618150.5657210615 2618797.733618815 2905438.790514499 2903316.3114301967 3085033.673627025 3244994.7101237252 3108676.465091313 0.9318177669907417 0.8808926678832862 0.9135353626012956 0.8422074780445694 0.8424156592126713 0.93462244242556 0.9339396827018845 0.9923945795808014 1.0438508949268892 1.0 21.567869045605413 1.9132775582811266 1.4587113453195415 1.0220411930812612 0.8841239355161056 0.7634600164373638 0.03069500497864981 0.19166818231676108 0.7598691180665956 0.02256540605634659 0.010026750821780969 81.89880374450647 -1.9132775582811266 -0.1379172575651556 EFGIADPDEIMWFK ddPTM_BT-474_Trastuzumab_2h_R1 4 EFGIADPDEIMWFK 14 0 Q15067-2;Q15067;Q15067-3;I3L0T4;I3L4S5;K7ELT1 Q15067-2;K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 ;;; 182.35 3.5663e-06 270889000.0 464808.0 549429.0 507267.0 482692.0 500942.0 560645.0 599461.0 525888.0 642411.0 529895.0 False True 462305.5253730235 567716.4121281552 578685.7843561951 543800.7577084741 564733.9943841433 521888.9307663722 570462.7812665962 565132.4329651557 484097.4169163743 496076.6474340665 0.931923580285985 1.144412693209088 1.1665249459925608 1.0962030978907358 1.1384006832516784 1.0520328531202154 1.1499488722504647 1.1392038627262078 0.9758520571777481 1.0 18.920203519101314 1.2333061117915434 24.97781684117876 0.9879259545129685 1.1089767255590137 0.3234159288971653 0.06562837014777499 143.86717897279274 683848.8486139526 0.054123911535879005 0.015094754690830279 17.112210416084952 -1.2333061117915434 0.12105077104604522 EFGS(ph)VDDENKPIWMHAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EFGSVDDENKPIWMHAEER 19 1 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;H0YG16;G5E9S8 Q07866-6 KLC1 Kinesin light chain 1 1 EFGS(1)VDDENKPIWMHAEER;EFGS(1)VDDENKPIWMHAEER 225.27 1.072e-19 202471000.0 202770.0 197021.0 175987.0 185477.0 168179.0 204837.0 201341.0 192412.0 244205.0 215665.0 True False 201678.30884986505 203578.7248832903 200764.43989357408 208958.36918261467 189595.59877496964 190677.10032443263 191601.36663268774 206770.7604883385 184023.94992934942 201901.07505990422 0.9988966566425014 1.0083092664211337 0.9943703362352434 1.0349542176564268 0.9390519526392639 0.9444085439756008 0.9489863616419053 1.0241191654229154 0.9114560181254575 1.0 17.623289067025283 3.237844533226124 24.99999640279667 0.965102370432981 1.0080193581631913 0.35169721214429817 0.03152845911740702 24.44220324075472 853349.0789383221 0.00912486769561495 0.01154368161527946 1729.1972382022302 -3.237844533226124 0.042916987730210354 EFGSVDDENKPIWMHAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EFGSVDDENKPIWMHAEER 19 1 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;H0YG16;G5E9S8 Q07866-6 KLC1 Kinesin light chain 1 0 ; 194.08 2.3417e-15 1038480000.0 676480.0 611400.0 526100.0 555420.0 549730.0 666670.0 635950.0 554260.0 841570.0 697620.0 False True 672837.906843993 631750.0794008955 600170.3070568241 625736.1150515036 619734.8569950111 620584.6720723769 605186.6689350798 595621.6956752519 634176.3499602486 653097.294337469 1.0302261434516427 0.9673138824465211 0.9189600267226089 0.9581055081330236 0.9489165892559664 0.9502177967249514 0.9266409066186809 0.9119953502172705 0.9710289040526271 1.0 19.31693840587502 4.669469952111843 3.1373607343644307 0.9427874232627942 1.0371595426691207 0.47981005439818214 0.024987655146579732 0.22033971219616091 3.4625387414068007 0.00588830596732688 0.04621833452637259 46716.46279518228 -4.669469952111843 0.0943721194063265 EFGSVNGDNKPIWMHAEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EFGSVNGDNKPIWMHAEER 19 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 0 247.89 5.0532e-25 221910000.0 157570.0 162610.0 150870.0 132370.0 168120.0 171570.0 164090.0 155770.0 202640.0 175230.0 False True 156721.66062767268 168022.37555017933 172111.1846144517 149128.0284277982 189529.08547468984 159709.76973233782 156152.3398153271 167394.34838403272 152702.08723688443 164046.67137804942 0.9553480074368832 1.0242352017187097 1.049159871204076 0.9090585451997936 1.1553363678920103 0.9735630012527526 0.9518775267037901 1.0204068572550826 0.9308453865850095 1.0 17.323746795296493 EFGVTTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFGVTTGR 8 0 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 ;;; 179.21 0.00057125 482846000.0 381819.0 484690.0 445029.0 447669.0 470928.0 443363.0 485080.0 425940.0 469617.0 464146.0 False True 379763.3289280791 500822.6136487077 507685.2149385892 504343.8494994631 530897.8893910588 412714.35937424045 461614.82721444813 457725.80567949504 353886.18289540097 434523.8049046173 0.8739758895636138 1.1525780820193354 1.1683714659776387 1.160681748172973 1.2217924159703901 0.9498083987937915 1.0623464629648487 1.0533963859125528 0.8144230049101288 1.0 18.729075690088905 2.7224635655550515 24.783404364995803 0.9926074098387457 1.1229905667555542 0.28420211156181696 0.10877523744761632 1041.7308734334335 1603871.6864272512 0.03530922150063788 0.03338314662278005 527.7929265759101 -2.7224635655550515 0.13038315691680846 EFGYDS(ph)PHDLDS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 2 EFGYDSPHDLDSD 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 2 EFGYDS(1)PHDLDS(1)D;EFGYDS(1)PHDLDS(1)D 206.66 8.788600000000001e-08 709630000.0 1047620.0 1135080.0 731190.0 983730.0 1043330.0 1076010.0 1075510.0 958180.0 1175490.0 1086260.0 True False 1041979.730321525 1172860.4516296503 834135.1963825885 1108270.117135891 1176191.8911985974 1001627.9613550901 1023483.4724528145 1029684.2571394526 885806.2402590071 1016933.9568060254 1.0246287119707982 1.1533300110396127 0.8202451996021756 1.089815233052826 1.156605975566759 0.9849488795722703 1.0064404532889824 1.0125379826763512 0.8710558186503451 1.0 19.955794557976542 1.411526897986417 5.483532747074719 0.9348138952034846 1.032906546825177 0.14178217350240552 0.09476577190499173 0.38312208708445017 18.950579158995108 0.06312925458492678 0.02330344760090052 25.794487173852513 -1.411526897986417 0.09809265162169245 EFHGNIIK ddPTM_BT-474_Trastuzumab_2h_R1 4 EFHGNIIK 8 0 Q92804-2;Q92804;A0A075B7D9 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ;;; 118.5 0.0018756 3072250000.0 6080290.0 7133590.0 6966080.0 6363490.0 5618190.0 6426230.0 6747950.0 5910530.0 8806780.0 7128300.0 False True 6047554.3942237245 7371027.23080379 7946843.513747211 7169107.181536666 6333633.194878952 5981999.845818272 6421525.878827693 6351603.761663198 6636467.073806003 6673365.791155325 0.9062225245076432 1.1045441627931025 1.190829899400946 1.0742865603198886 0.9490912671493829 0.8963992133844411 0.9622619349502146 0.9517841461772437 0.9944707485691513 1.0 22.669983154641052 3.2477113809529294 8.570857340473928 0.953625363658561 1.0804355020411711 0.3600984462309139 0.07095288331645125 0.13840159323015036 78.24993486696074 0.020256522808928562 0.02632335579392505 1768.9329879573938 -3.2477113809529294 0.12681013838261013 EFHLNESGDPSSK ddPTM_BT-474_Trastuzumab_2h_R1 11 EFHLNESGDPSSK 13 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 ;;;;;;;;;; 190.41 4.4386e-06 119402032000.0 57543498.0 62255502.0 57928378.0 57367100.0 55631008.0 66161669.0 67362163.0 58360449.0 83340853.0 64602860.0 False True 57233690.20045166 64327638.749824286 66084190.09991217 64629768.97801873 62715287.117982134 61588068.549846426 64103597.827237725 62715602.05273537 62802616.48836536 60479850.165508956 0.9463265871827746 1.0636210006107072 1.0926645803365318 1.06861655247414 1.0369616813923264 1.0183237620679404 1.0599166110995981 1.0369668886597447 1.0384056229719474 1.0 25.84995122960146 0.257841645320953 0.9999014176549097 0.9997607891394096 1.0440330032377416 0.08966441667181413 0.03727981701516616 8.41898273292785 9.307118536252004 0.039107274893572824 0.011226939920812725 1.8106797529103889 -0.257841645320953 0.04427221409833204 EFIANHPDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFIANHPDYK 10 0 E1CEI4;P48506;A0A2R8YEL6;B4E2I4;A0A2R8Y648 E1CEI4 GCLC Glutamate--cysteine ligase catalytic subunit 0 107.06 0.0023346 190990000.0 296990.0 267560.0 248170.0 274170.0 246620.0 282400.0 295020.0 269110.0 388530.0 329410.0 False True 295391.03883869125 276465.57285656425 283110.17886769073 308879.89388871635 278025.5951687369 262878.352698095 280748.7555141553 289192.3547128912 292781.98753526795 308386.77177791036 0.9578589805772273 0.8964897270485562 0.9180360663186197 1.001599037818526 0.9015483821367067 0.8524307031152785 0.910378723106648 0.9377586238399281 0.9493986588572598 1.0 18.234381356746464 0.944417217443264 1.653746943887224 0.9992481315726346 0.9195894912409804 0.2967515189647061 0.03717519327362503 0.5642476240968965 3.15821849523734 0.03654109790640264 0.010548707706458068 8.798673807656085 -0.944417217443264 -0.07965864033165415 EFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 EFITGDVEPTDAESEWHSENEEEEK 25 0 Q99733;Q99733-2;C9JZI7;E9PNJ7;C9J6D1;A8MXH2;E9PKT8;E9PS34 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK 371.33 5.5320999999999974e-120 13557990000.0 7699600.0 5937210.0 5731270.0 5030130.0 5300840.0 7542050.0 7100520.0 6656760.0 8840200.0 7533280.0 True False 7658146.209105975 6134826.44573076 6538182.99890812 5666943.9422491575 5975870.553459762 7020685.835576028 6757040.720979496 7153521.233542356 6661651.162611069 7052499.620834509 1.0858768693134366 0.869879727126428 0.9270731443349541 0.8035369368199411 0.8473407833735762 0.995489005747055 0.9581057900404323 1.0143242280239773 0.9445801518274748 1.0 22.74970325257101 2.719199489359789 24.119209748235352 0.9839148304188164 0.9000895640066937 0.21418585832637826 0.07196753978571163 761.6201487973672 948789.5567679403 0.023251071525764933 0.021957022210782953 523.8410030990862 -2.719199489359789 -0.08382526641212273 EFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_BT-474_Trastuzumab_2h_R1 11 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 Q99733;Q99733-2;C9JZI7;E9PNJ7;C9J6D1;A8MXH2;E9PKT8 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.244)EWHS(0.756)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.044)EWHS(0.955)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK 452.94 3.654799999999997e-221 10492092000.0 2308397.0 1703065.0 1474548.0 1658529.0 1779501.0 2618416.0 2400937.0 2343506.0 4253994.0 2658117.0 True False 2295968.8470390174 1759750.4890004676 1682151.5413990251 1868498.601347192 2006109.9044212257 2437411.0650082678 2284794.504839978 2518390.317802346 3205654.1792991697 2488473.697331544 0.9226413964114009 0.70716057432614 0.675977223790969 0.7508613023922384 0.8061607830424048 0.9794803407494191 0.9181509562628786 1.0120220762240253 1.2882009493356017 1.0 21.246829707422133 2.2646332848814303 0.9633390118181479 1.1135647878421784 0.7527346190611804 0.6510684811018721 0.10205031510429663 0.34065910029202373 0.6058092662879326 0.07429233813655713 0.04319841966235524 183.9218322957937 -2.2646332848814303 -0.36083016878099794 EFKEEGEEIPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EFKEEGEEIPR 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ;; 102.73 0.0025802 1741480000.0 1077070.0 1117100.0 985050.0 932430.0 906630.0 1111800.0 1122070.0 991520.0 1557780.0 1125840.0 False True 1071271.1747937268 1154281.998198791 1123736.4777919108 1050475.5423957973 1022083.9564829787 1034943.882895687 1067791.1873763427 1065512.257236541 1173885.9921825593 1053987.927319882 1.0163979558264897 1.0951567549107895 1.0661758533130337 0.9966675283150386 0.9697302312389575 0.9819314396962584 1.0130962221659978 1.0109340245916891 1.1137565827414726 1.0 20.007426911351022 3.745281395089693 24.38270951686569 1.009884198007554 1.0628348502453504 0.21424145349522494 0.04084020155030446 542.1203377503139 1966776.9559293215 0.01066673118582743 0.01869792192012261 5562.645644437983 -3.745281395089693 0.05295065223779649 EFKEEISR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFKEEISR 8 1 Q9NRR5;Q9NRR5-2 Q9NRR5 UBQLN4 Ubiquilin-4 0 ; 91.867 0.011111 1000730000.0 762870.0 855630.0 740570.0 798190.0 837950.0 1008330.0 977340.0 1002770.0 1268470.0 1115990.0 False True 758762.7926828247 884109.1273107427 844835.8188501656 899240.7721597352 944657.9655812312 938626.5204535068 930062.3303986327 1077601.7893628855 955872.5651271744 1044766.5627528907 0.7262510303579538 0.8462264766410342 0.8086359661282412 0.8607097549047658 0.9041808948135935 0.898407887385186 0.8902106590662511 1.0314282900894878 0.9149149668501195 1.0 19.99474919930496 5.630576018461615 0.22930470829196364 1.0172141832248414 0.39228166552080457 0.7790200517799188 0.0390951936024434 7.4877365561995735 0.24601686447914248 0.06163406104270179 1.419283509000769 427145.68004019884 -5.630576018461615 -0.6249325177040368 EFLDFFWDIAKPEQETR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFLDFFWDIAKPEQETR 17 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 ; 161.32 2.7184000000000005e-09 417690000.0 443030.0 475780.0 455410.0 457080.0 470320.0 607030.0 521290.0 526920.0 715060.0 549270.0 False True 440644.77570526 491616.04968491703 519527.7695053197 514946.2811345319 530212.4641949576 565067.4448949179 496073.211178816 566241.4460455448 538843.0443130996 514215.1183462938 0.8569269163504281 0.9560513336635162 1.0103315732452816 1.0014219006057028 1.0311102207576295 1.0988930988885823 0.9647192264089359 1.1011761923036543 1.0478942082566702 1.0 18.972012501649587 5.997508203862691 0.6548201220697849 1.0474387896482587 4.639665320232793e-16 0.6644116462554818 0.03952994573175052 7.771536831333309 0.7071909383643586 0.014879830591581432 8.825926064361754 994278.855794558 -5.997508203862691 -1.0474387896482582 EFLEDYDDDRDDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 EFLEDYDDDRDDPK 14 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ;;; 154.72 5.5096000000000014e-06 3185200000.0 3032680.0 2432700.0 2149540.0 1989460.0 1990340.0 2896050.0 2791620.0 2645350.0 3933590.0 2621420.0 False True 3016352.3878424247 2513670.948901798 2452176.547863385 2241325.43201607 2243798.0013305647 2695852.880068408 2656578.675575983 2842759.449815119 2964209.4519055313 2454118.731289424 1.229097985107508 1.024266233272701 0.9992086025010622 0.9132913593135122 0.9142988775248236 1.0985014073267652 1.0824980233047583 1.1583626389263972 1.2078508729478217 1.0 21.22677361820224 2.5296676580396285 10.604122098830437 1.1228091853839013 1.0094401714683168 0.18782721996511664 0.09595520986591868 1.1542800544904777 230.3848404621987 0.03204851597691862 0.030146218012434202 338.58495631323217 -2.5296676580396285 -0.11336901391558452 EFLEFR ddPTM_BT-474_Trastuzumab_2h_R1 6 EFLEFR 6 0 O75323;C9K068;H7C333;C9J7B1 O75323 GBAS Protein NipSnap homolog 2 0 ;;;;; 135.82 0.031258 2302400000.0 1874450.0 2418600.0 2453070.0 2152310.0 2667910.0 4065170.0 2216330.0 1779530.0 2698970.0 2462280.0 False True 1864358.169470971 2499101.6389254234 2798440.933533329 2424792.225318681 3007652.5245585293 3784154.366280866 2109117.650697202 1912327.5648702448 2033845.0078451165 2305135.1823360333 0.8087847444945172 1.0841453716362195 1.2140029595563144 1.0519089049091632 1.3047618845115028 1.6416192834495669 0.9149648432157517 0.82959454158011 0.8823105141209158 1.0 21.136419927860402 2.0366800237966167 24.99999761769115 0.8818446224970745 1.1886281160160796 0.30899743223976794 0.20246300585694618 196.50884691766396 133933.72040123853 0.07916654607925698 0.05846820900560073 108.81280951372709 -2.0366800237966167 0.30678349351900513 EFLEKEELPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFLEKEELPR 10 1 Q13596-2;Q13596;H0YK42;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 0 112.13 0.001516 152930000.0 144160.0 164840.0 136110.0 156110.0 156740.0 183080.0 193550.0 151530.0 245240.0 188820.0 False True 143383.85857768176 170326.59975211558 155273.1049106717 175873.50999368113 176699.90992923477 170424.11052396335 184187.24706719804 162837.9380537491 184803.8880476387 176769.3459430651 0.8111353120232944 0.9635528085676991 0.878393841886381 0.9949321759120356 0.9996071942595031 0.9641044357252673 1.0419637301057965 0.9211887795647379 1.0454521232836456 1.0 17.431508589153466 6.144075609928653 0.6207269494239862 0.9913547673401891 1.8400446610604276e-19 0.5825678249380273 0.04509865524965734 12.244992930303399 0.91253990036876 0.017815968111327365 12.763773986331659 1393399.3702834728 -6.144075609928653 -0.9913547673401891 EFLHAQEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFLHAQEEVKR 11 1 P43686 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;;; 168.98 1.131e-05 3686410000.0 2928210.0 2953920.0 2606410.0 2650560.0 2537360.0 3123730.0 3222840.0 2780090.0 4094520.0 3051040.0 False True 2912444.8427147167 3052239.4415176506 2973369.872678156 2986120.6242319574 2860477.7558890074 2907793.897569475 3066938.9167556106 2987554.432810973 3085480.409757047 2856320.015073241 1.0196493485832456 1.0685915532610184 1.040979251970096 1.0454433006363917 1.0014556284988465 1.0180210488406756 1.0737378517011054 1.0459452782059389 1.0802292437382686 1.0 21.44572619375254 2.246470627164126 24.99978595074464 1.0536763753751281 1.033585917494427 0.0894370252032044 0.02633997805550592 383.86459733548605 1213208.9502549565 0.009032691538898222 0.007435473731293401 176.38864627080875 -2.246470627164126 -0.020090457880701074 EFLHNQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFLHNQGK 8 0 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 ; 133.55 0.0009147 605710000.0 905640.0 845490.0 860690.0 788590.0 774150.0 1009700.0 866310.0 790380.0 1104330.0 964230.0 False True 900764.1348660621 873631.623540501 981867.6707484102 888425.4131440454 872733.4137534568 939901.8155781409 824403.2756744222 849362.1690683182 832182.66876386 902692.0158811639 0.9978642981424624 0.9678069686787962 1.0877105961660234 0.984195492497857 0.9668119340809025 1.0412209247920008 0.9132719257184079 0.9409213265714025 0.921889918292369 1.0 19.78387432155494 2.2336301239781675 24.999377952429242 0.9383706251649319 1.006516165991657 0.3720020913744788 0.04018843637953641 122.3404948427878 620303.4941400351 0.014337718047284604 0.01092010109519169 171.2498201177649 -2.2336301239781675 0.06814554082672519 EFLLIFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFLLIFHK 8 0 Q9BUP0;A0A087X1Z2;Q9BUP0-2;Q8WYH2;C9JTV4 Q9BUP0 EFHD1;PP1187 EF-hand domain-containing protein D1 0 ; 112.94 0.0029442 426650000.0 1005690.0 1152870.0 1120520.0 893690.0 753710.0 961280.0 1073120.0 795280.0 1396060.0 1118590.0 False True 1000275.4767826642 1191242.5810253676 1278279.4762655625 1006831.0623679004 849690.500910829 894828.9762097198 1021209.085883501 854627.8319500133 1052019.7192455826 1047200.6285269193 0.9551899125478334 1.1375495283086965 1.2206633967205482 0.9614500172561908 0.8113922755241996 0.8544962176621892 0.9751799779952575 0.8161070655125607 1.0046018791312628 1.0 19.998106437621797 3.5295677693349115 6.9250342077313185 0.8964025601583705 1.1063083133829377 0.4786423950017701 0.09000125321200622 0.18367057493081715 20.20055837332394 0.023324752198020982 0.03588779262094083 3385.070899690839 -3.5295677693349115 0.20990575322456717 EFLLSLDDSVDETEAVKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFLLSLDDSVDETEAVKR 18 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;A0A286YEP7;H7C0U8 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ;;; 320.73 2.2120999999999997e-61 932160000.0 788980.0 804590.0 712936.0 713108.0 697344.0 862580.0 896730.0 818790.0 1152570.0 899060.0 False True 784732.2193439193 831370.2917650746 813311.1918491992 803387.3996833892 786146.6249182865 802951.8748949104 853351.744058738 879892.2675313734 868534.5671467419 841681.221076009 0.9323389897433071 0.9877496027560733 0.9662936174451636 0.9545031771723922 0.9340194425548346 0.9539857309260306 1.013865728129005 1.0453984780681163 1.031904413925742 1.0 19.68291440386464 2.1652902161902423 4.1719236858093565 1.0303947412030523 0.9557082552946349 0.7676484511181368 0.018315953278404618 0.09649778936932184 3.2517307520428775 0.0072178741032942915 0.005253856957952762 146.31545972029758 -2.1652902161902423 -0.07468648590841742 EFLVAGGEDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFLVAGGEDFK 11 0 Q9Y3F4;Q9Y3F4-2;H0YH33 Q9Y3F4 STRAP Serine-threonine kinase receptor-associated protein 0 117.52 0.0019627 61427000.0 238550.0 233520.0 199320.0 187570.0 207270.0 249030.0 261870.0 244080.0 339070.0 221400.0 False True 237265.67330539683 241292.57203417903 227382.5234795027 211316.34276801458 233664.60591446 231815.14225356482 249202.3476594535 262294.4890131267 255510.74180522287 207270.0624499234 1.1447175269835237 1.1641457969477647 1.0970350507538371 1.019521778834166 1.1273437328698328 1.1184207671552737 1.2023074857694944 1.2654721377164502 1.232743111982004 1.0 17.6611522268028 2.254125645197975 5.186148361196219 1.2053060504809976 1.1094106192125976 0.09195200167051842 0.07702648218148704 0.24632128604686296 18.43126414406835 0.027397994375008294 0.021673624395755566 179.52529341088416 -2.254125645197975 -0.09589543126839994 EFNAEVHR ddPTM_BT-474_Trastuzumab_2h_R1 6 EFNAEVHR 8 0 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 ;;;;; 228.4 2.1638e-06 18375810000.0 10419610.0 12669820.0 12188570.0 11642990.0 10056430.0 10698820.0 11709550.0 9868280.0 13613580.0 11489100.0 False True 10363511.977487504 13091527.299632063 13904614.71105038 13116991.340217352 11337056.751369484 9959235.755713303 11143114.33167507 10604701.163710488 10258695.621626064 10755855.801686618 0.9635227701604562 1.217153478162025 1.2927483379676776 1.2195209365079518 1.0540357699469833 0.9259361541600066 1.0360044367578567 0.9859467586063744 0.9537777198553931 1.0 23.358618983182588 3.076824451923348 4.386601610833396 0.9848098822452406 1.1838540420106192 0.5377146990402684 0.0839189661256741 0.1625270207114774 5.958752978450627 0.025260477420869187 0.030338731744536298 1193.5055748269228 -3.076824451923348 0.1990441597653786 EFNAEVHRK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFNAEVHRK 9 1 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 ; 128.52 0.00026942 1955990000.0 1752870.0 2585900.0 2227170.0 2347600.0 2206200.0 2213200.0 2582400.0 2068650.0 3534800.0 2850700.0 False True 1743432.7426821648 2671970.1182904425 2540736.177091327 2644805.919295151 2487146.4928281056 2060206.6933124103 2457479.4462739984 2223023.1673918543 2663695.9038933027 2668765.8853929434 0.653273017399001 1.0012006421826047 0.9520266243650797 0.9910220801948445 0.9319463001386139 0.7719698099367266 0.92082990858232 0.832977961671052 0.9981002524322607 1.0 21.3477413214894 1.218126444687291 24.279583803031873 0.999050415334925 0.8888942662639815 0.17421978645283398 0.1011034194719357 358.9568543129334 426491.2514504715 0.09275161261541595 0.023313435569556586 16.52442836355404 -1.218126444687291 -0.11015614907094351 EFNEDGALAVLQQFK ddPTM_BT-474_Trastuzumab_2h_R1 3 EFNEDGALAVLQQFK 15 0 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;; 262.29 1.2599e-24 392040000.0 997944.0 996057.0 878258.0 747678.0 810079.0 1014887.0 954576.0 965031.0 1213470.0 1005561.0 False True 992571.1803860017 1029210.1551158284 1001909.0924446168 842333.9581388485 913237.7589355902 944730.2504770241 908399.5120455575 1037046.5135481245 914426.5781649336 941385.2360759142 1.0543730051720928 1.093293282786126 1.0642923364944528 0.8947813560897209 0.9700999377707956 1.0035532896341708 0.9649604404591525 1.101617567183193 0.9713627780871564 1.0 19.844425701580096 3.9676136557945587 24.995500813201602 0.9947620509839171 1.0750731087269971 0.3722183984482924 0.04931867141432445 731.6849767485031 564709.3734700627 0.013797292408757099 0.024904051343676372 9281.40354662303 -3.9676136557945587 0.08031105774308 EFNFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EFNFEK 6 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 ;; 103.92 0.079739 1398390000.0 926310.0 1008890.0 926240.0 904990.0 850000.0 1042620.0 1121750.0 975460.0 1409800.0 1111930.0 False True 921322.8498827156 1042470.2937631164 1056646.5409775968 1019561.6412092854 958242.4616552852 970546.1334634848 1067486.666998861 1048253.7784855147 1062373.6803521512 1040965.6754288332 0.8850655421497641 1.00144540628937 1.015063768113491 0.9794382901139076 0.9205322368199417 0.9323517156928939 1.025477296894638 1.0070012904639523 1.020565524328647 1.0 19.989491067639676 2.228133613214724 24.985844006087042 1.0135267370246777 0.9599168434271826 0.3682375133990946 0.03671309212170082 259.32301994979207 621401.724561063 0.014329741485650806 0.010697487150008142 169.09610856045293 -2.228133613214724 -0.05360989359749502 EFNKYDTDGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 EFNKYDTDGSK 11 1 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 ;;;; 153.38 2.9642e-05 9002280000.0 10255130.0 9760950.0 8546840.0 7617390.0 8614270.0 11757210.0 11469820.0 10859540.0 16443090.0 11812170.0 False True 10199917.519532068 10085837.320131134 9750160.781534975 8581750.79297141 9711246.223721508 10944461.746195372 10914980.987632595 11669934.018426789 12390910.795617571 11058307.197692469 0.9223760325324005 0.9120597881595965 0.881704641336925 0.7760456134517731 0.8781856074452289 0.9897049838224016 0.98703904607662 1.055309262964041 1.1205070155948622 1.0 23.398627219367324 2.4199228636063785 1.6490820245868847 1.0556318856555735 0.8711971254763942 0.7227658820801537 0.049348754143010196 0.20318765793925422 1.1220059780986904 0.024774555534414076 0.018242106202573823 262.9800863302306 -2.4199228636063785 -0.18443476017917937 EFPGFLENQKDPLAVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFPGFLENQKDPLAVDK 17 1 P60903 P60903 S100A10 Protein S100-A10 0 ; 152.71 1.8477e-07 1351230000.0 566050.0 614210.0 601100.0 488280.0 617170.0 993840.0 731710.0 526880.0 1078660.0 713360.0 False True 563002.4496940677 634653.6085522136 685729.655145138 550096.1979355236 695762.9412468139 925138.1800477158 696314.3918963559 566198.4610424297 812838.6963034838 667832.7540617774 0.8430291061195654 0.950318181748698 1.026798477574679 0.8237035314452955 1.041822128392422 1.3852842263590692 1.042647860053812 0.8478147524193668 1.2171291260570498 1.0 19.349127326992797 3.0453765379502045 11.196560619265481 1.0794225083213178 0.9232347172310879 0.27485608354535684 0.1419916155132147 1.0619434672849024 257.8464454182192 0.04447815267256834 0.053154833985727755 1110.1368986713587 -3.0453765379502045 -0.15618779109022995 EFQLWEEQLHSYPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFQLWEEQLHSYPHK 15 0 P49750;H0YIQ2;F8VU51 P49750 YLPM1 YLP motif-containing protein 1 0 ; 185.26 2.488e-07 254880000.0 295930.0 321290.0 291950.0 290900.0 304750.0 328790.0 327350.0 113169.0 368770.0 268350.0 False True 294336.74576091405 331983.94342609396 333054.0223251087 327727.9101733513 343558.10610523284 306061.52118840907 311514.82990156184 121614.24544053795 277891.5747648338 251223.67325400608 1.171612300498916 1.3214675954938098 1.3257270623074042 1.304526384509925 1.3675387420908764 1.2182829636399664 1.2399899494606819 0.484087521949322 1.1061520244704983 1.0 17.93861289279431 1.8844151464130472 8.564881641658323 0.8153829871237682 1.2875060873572155 0.5819293955186096 0.16001054127481518 0.1779874887372536 12.140515171040724 0.06361001753893278 0.040010579261499646 76.63287982181558 -1.8844151464130472 0.4721231002334473 EFQQNNWHAVGCGFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFQQNNWHAVGCGFR 15 0 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4;E5RJR3;Q9NZL9-5 Q9NZL9 MAT2B Methionine adenosyltransferase 2 subunit beta 0 104.95 0.0013531 304610000.0 128930.0 120320.0 126880.0 110510.0 107210.0 132220.0 131590.0 112650.0 169490.0 143630.0 False True 128235.8552054697 124324.7784650242 144743.6011392699 124500.55466915428 120862.55801654485 123079.94261240146 125224.48897738365 121056.51502510946 127721.46054964254 134463.41043217058 0.9536858747916235 0.9245993245704506 1.076453443163894 0.9259065664704227 0.898850903960326 0.9153415209150042 0.931290442321129 0.9002933559102001 0.9498603385050315 1.0 17.036854121050958 3.5355098456083183 24.999888689905074 0.9239445303501896 0.9825979674002834 0.2101738322162673 0.04558695858570225 346.0069576699874 148146.5820237774 0.01156515594176676 0.017916618073955472 3431.704195021279 -3.5355098456083183 0.05865343705009374 EFRPEDQPWLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFRPEDQPWLLR 12 1 P35269;M0QXD6;M0R0R9;M0R0Z3 P35269 GTF2F1 General transcription factor IIF subunit 1 0 ;;; 208.28 6.2686e-08 1401450000.0 854110.0 1055760.0 947220.0 1033270.0 996150.0 943290.0 1023090.0 959580.0 1080190.0 1060450.0 False True 849511.5666605424 1090900.333379604 1080580.3426161674 1164081.8760564413 1123003.7978563665 878082.5825658148 973599.2281166605 1031188.7322485077 813991.6483044334 992771.1731030792 0.855697253985776 1.0988436841591653 1.088448548761368 1.1725580955557973 1.1311809088354394 0.8844763086958043 0.9806884551991035 1.0386972951937632 0.8199186986464976 1.0 19.921101699267467 2.7443615656048905 24.988459747482487 0.9577287883202387 1.0777797665178765 0.2837375323759149 0.0974372741005959 663.0939337907158 2856376.3656846755 0.030459409591868002 0.03153575351894131 555.0876508562569 -2.7443615656048905 0.12005097819763788 EFS(ph)AHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFSAHK 6 0 Q5SVQ8-2;Q5SVQ8 Q5SVQ8-2 ZBTB41 Zinc finger and BTB domain-containing protein 41 1 EFS(1)AHK;EFS(1)AHK 63.653 0.071609 619260000.0 182560.0 478030.0 520980.0 525300.0 414170.0 381960.0 428150.0 65817.0 374490.0 495940.0 True False 181577.1172443226 493940.9395747626 594329.4555606628 591802.926139777 466912.0945220822 355556.0042371262 407438.7488081674 70728.59875195411 282201.9574089066 464288.6846044044 0.3910866735833435 1.063865986731129 1.2800860224863313 1.2746443016245823 1.005650385212194 0.7658080328623053 0.8775547677956533 0.15233754579269615 0.6078157120054645 1.0 18.824662595177617 2.2285034563045363 2.0115234928623007 0.5127390947859517 1.02426160481389 0.1879495132274448 0.3148752376754017 0.38759078099346433 3.160580983954075 0.15434193942986033 0.10025577364594887 169.24017132523625 -2.2285034563045363 0.5115225100279382 EFSDFIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSDFIR 7 0 A6NHR9;A6NHR9-2;J3KTL8;A6NHR9-3 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 0 89.369 0.041698 85742000.0 226700.0 353700.0 334130.0 363820.0 305010.0 277430.0 300920.0 239000.0 272080.0 299020.0 False True 225479.47238873795 365472.6906838349 381172.59968997637 409879.57469669497 343851.21556409216 258251.91709997357 286363.34997396654 256835.39361740937 205029.52968521294 279936.2875960981 0.8054671094090797 1.3055566815658846 1.3616405467230657 1.4641887917299368 1.228319552698408 0.9225381936642258 1.0229590184004356 0.9174780298150574 0.7324149771573621 1.0 18.094738987219916 2.7556508055618534 5.305498822851428 0.9218682478219847 1.2591067514586172 0.437593515974088 0.1769418009996237 0.16951979828273336 15.549248150249158 0.05686960197673851 0.05810080280400582 569.706016005317 -2.7556508055618534 0.33723850363663244 EFSDIFR ddPTM_BT-474_Trastuzumab_2h_R1 6 EFSDIFR 7 0 I3L0N3;P46459;P46459-2 I3L0N3 NSF Vesicle-fusing ATPase 0 ;;;;; 164.0 0.0028245 1338050000.0 1913380.0 2264150.0 2114670.0 1947980.0 1755110.0 2092660.0 2108160.0 1776170.0 2370850.0 1960990.0 False True 1903078.5746765016 2339510.864042422 2412397.154958856 2194594.0682691084 1978612.8551480095 1947999.3397917722 2006180.2468467287 1908716.8246085108 1786585.7852623756 1835837.9393119945 1.036626672716932 1.2743558752899429 1.31405779524468 1.1954181909387724 1.077770980095074 1.0610954802044301 1.0927872247800763 1.039697886036623 0.973171839956594 1.0 20.808007278146555 3.203932551897353 3.18020825873898 1.043054253322219 1.2210147551042667 0.5431838206917075 0.07425498736403707 0.18741870103979127 3.8973028854100407 0.022327779828661916 0.02874855141216447 1599.309628551289 -3.203932551897353 0.1779605017820478 EFSFEAWNAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFSFEAWNAK 10 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 ; 150.85 4.8473e-05 810730000.0 765420.0 827600.0 684080.0 699380.0 677850.0 808110.0 935880.0 766670.0 1021780.0 879960.0 False True 761299.0637661567 855146.1657052363 780392.5178700476 787921.4362909534 764170.179568277 752247.257786324 890607.9089912139 823882.8084713772 769976.0101505315 823800.1994283409 0.9241307106922825 1.0380504475461978 0.9473079982398461 0.9564472512117808 0.9276159196107953 0.91314284496208 1.0810969815365823 1.000100278008058 0.9346635393932176 1.0 19.651934949895523 2.2653784889066446 24.99997047932451 1.0063130947670273 0.954068523580517 0.23837434986435346 0.04602175246256689 329.98375286527823 307613.96929898136 0.016207621136404657 0.013557103566222849 184.23769388850405 -2.2653784889066446 -0.05224457118651038 EFSGGWR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSGGWR 7 0 Q9NUQ8-2;Q9NUQ8 Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 0 112.59 0.014702000000000003 203930000.0 253040.0 346630.0 317100.0 312250.0 315220.0 297490.0 310400.0 248320.0 317860.0 288560.0 False True 251677.66075538693 358167.3700077403 361744.9237173902 351780.8179842862 355361.39854468114 276925.21651613445 295384.76615685027 266850.89934341 239527.66210578394 270143.853751355 0.931643112587841 1.3258394186432374 1.3390825617315223 1.3021981181480855 1.315452465824974 1.025102783833909 1.0934350793289838 0.9878103670980576 0.8866670804446628 1.0 18.043368332921457 2.6899319211509356 6.677555584702073 1.0037145118298063 1.2559867967485454 0.5053117852438567 0.12044748303353052 0.19373352890759943 21.489636941720377 0.0392100928439572 0.03717409076483012 489.7020489593823 -2.6899319211509356 0.2522722849187391 EFSGNPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSGNPIK 8 0 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 95.099 0.02301 109710000.0 143000.0 159020.0 138340.0 127260.0 115240.0 167810.0 153860.0 125500.0 199100.0 145390.0 False True 142230.10388879356 164312.88457038 157817.0695271641 143371.10295173837 129915.13091900585 156209.68968224977 146417.20399772204 134865.44727608724 150034.47280331474 136111.0857253586 1.044956060197637 1.2071969281174222 1.1594725637969214 1.0533389120194725 0.9544786908918295 1.1476632402848186 1.0757184340822823 0.9908483688699334 1.1022942914881333 1.0 17.054425048036137 3.7095799330370216 7.840240336204969 1.0447026761708174 1.1442176409348868 0.2901489194750648 0.0648368513637915 0.2762463758198146 66.14609923751009 0.01685536677006774 0.026632452389974193 5123.6556381093815 -3.7095799330370216 0.0995149647640694 EFSGPST(ph)PTGTLEFEGGEVSLEGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSGPSTPTGTLEFEGGEVSLEGGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 EFS(0.001)GPS(0.05)T(0.442)PT(0.442)GT(0.066)LEFEGGEVSLEGGK 211.93 4.0057e-25 54412000.0 39461.0 32358.0 31261.0 34404.0 32396.0 44283.0 41372.0 35520.0 46934.0 40792.0 True False 39248.54636052926 33435.01646917594 35662.277074516984 38759.54287247842 36521.438573864274 41221.820440969386 39370.67830361209 38170.682766905345 35367.744583379084 38188.61963621175 1.0277550415389316 0.8755230429295675 0.9338456695800756 1.014950088317026 0.9563435107571525 1.0794268248931798 1.0309531655938533 0.9995303085192062 0.9261330972497939 1.0 15.220855152875082 3.7419216046932107 24.393565597313366 1.0039629563487413 0.9386894248052184 0.18818284749972214 0.05181754002424582 292.22388480289715 2120902.273828131 0.013235141730186936 0.022642508219371013 5519.777917467449 -3.7419216046932107 -0.06527353154352289 EFSGPSTPT(ph)GTLEFEGGEVSLEGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSGPSTPTGTLEFEGGEVSLEGGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 EFS(0.001)GPS(0.103)T(0.103)PT(0.768)GT(0.024)LEFEGGEVSLEGGK 165.13 1.1737000000000001e-14 0.0 191480.0 189750.0 170240.0 154910.0 161940.0 249640.0 218170.0 189100.0 217950.0 192270.0 True False 190449.0929554279 196065.71404370255 194208.31224739368 174521.59011671966 182562.09910641972 232382.9743893504 207616.28360966506 203211.60223034327 164239.14288037398 179999.16398937133 1.0580554305611867 1.0892590259768091 1.078940079182042 0.9695688927034399 1.0142385945592487 1.2910225205438857 1.153429154937211 1.1289585891762397 0.91244392051772 1.0 17.457630680374045 EFSGPSTPTGT(ph)LEFEGGEVSLEGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFSGPSTPTGTLEFEGGEVSLEGGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 EFS(0.003)GPS(0.034)T(0.126)PT(0.126)GT(0.71)LEFEGGEVSLEGGK;EFS(0.003)GPS(0.199)T(0.208)PT(0.208)GT(0.382)LEFEGGEVSLEGGK 212.39 3.1909999999999997e-25 789140000.0 159007.0 183221.0 181491.0 174889.0 190205.0 220827.0 206824.0 183209.0 203672.0 216631.0 True False 158150.9239793383 189319.40022556667 207043.35525194832 197029.92946822662 214426.47931663925 205561.7492608438 196819.13297559388 196880.98589645157 153479.76466497584 202805.4241128698 0.779816046198649 0.9335026469519001 1.0208965374452703 0.9715219912391058 1.0573015009564135 1.0135909833774464 0.970482588602047 0.9707875751236267 0.7567833322818716 1.0 17.62973671275485 4.703991882279113 3.368178260109924 0.9738422794198315 0.7613944395375253 0.35365062816022075 0.07665142121719977 0.2969337906571407 5.708795350928162 0.018455382493068752 0.15428094471732612 50581.520734683894 -4.703991882279113 -0.2124478398823062 EFSHIAFLTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSHIAFLTIK 11 0 X6R5C5;X6R8A1;P10619-2;P10619 X6R5C5 CTSA Carboxypeptidase;Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain 0 75.819 0.022198 0.0 198080.0 203320.0 213400.0 209270.0 181470.0 234640.0 239690.0 189760.0 323280.0 264160.0 False True 197013.5592887567 210087.38329046464 243444.86509394867 235763.56054306368 204579.1288430407 218419.8890831481 228095.27899528132 203920.85478175542 243611.97573006328 247301.0826412457 0.7966546574911683 0.8495206775751719 0.9844067906775354 0.9533462531786839 0.8272472027137026 0.8832144475485579 0.9223383761977871 0.8245853702047029 0.985082528261576 1.0 17.915909030047143 1.142239560658144 7.329434980199635 0.9975972200841556 0.8827035517908897 0.3875753552201856 0.05650239785570688 0.2549266706405729 16.348577067853682 0.05565799097311194 0.013968626157793599 13.875209866054439 -1.142239560658144 -0.11489366829326597 EFSIDVGYER ddPTM_BT-474_Trastuzumab_2h_R1 5 EFSIDVGYER 10 0 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 ;;;; 223.84 9.8852e-09 1509180000.0 2156560.0 2510820.0 2300750.0 2339990.0 2328860.0 2450280.0 2458220.0 2239700.0 2789360.0 2502030.0 False True 2144949.320576338 2594391.125877261 2624675.601522501 2636232.4940754184 2625426.5167653263 2280897.9109386993 2339306.5072876643 2406837.7869661585 2101959.6035090624 2342348.3033043444 0.9157260333787524 1.1076026234942773 1.1205317321168156 1.1254656236890528 1.1208523143469502 0.9737654761766398 0.9987013903899822 1.0275319787287138 0.8973727777990291 1.0 21.15952418747241 2.7300567527873176 24.777490179807113 0.9866109346584809 1.084674164921274 0.3539748862943599 0.06592130717072395 647.3450233664396 1886149.028354751 0.021273990631455054 0.0203353306476681 537.1019792624752 -2.7300567527873176 0.09806323026279318 EFSITDVVPYPISLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFSITDVVPYPISLR 15 0 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 169.89 2.7251e-06 180910000.0 293010.0 350440.0 351890.0 350890.0 352600.0 374300.0 407920.0 442260.0 430600.0 464770.0 False True 291432.46671647154 362104.18355454644 401433.0533172895 395312.6380224376 397501.51997606264 348425.5220074256 388187.3511942724 475263.6869507759 324484.399744386 435107.9806903835 0.669793429791973 0.8322168280618472 0.9226055855843825 0.9085391570965835 0.9135698208645796 0.8007794328538417 0.8921632523915962 1.0922890593656258 0.7457560287207979 1.0 18.731013953270775 4.694276830065282 1.9882591153106544 0.9180084318348594 0.6097026183365001 0.3917761945387127 0.0903084094306721 0.6764330040486161 3.098426183435479 0.023545284437813507 0.3679279720451837 49462.58733116508 -4.694276830065282 -0.3083058134983593 EFSLAGGIWHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSLAGGIWHGR 12 0 Q8WWM7;H3BRB0;A0A0C4DGL7 Q8WWM7 ATXN2L Ataxin-2-like protein 0 123.67 0.00023323 0.0 203020.0 229880.0 190990.0 196490.0 192900.0 221210.0 190280.0 161120.0 257480.0 199240.0 False True 201926.96287764233 237531.41683460568 217879.7318851606 221365.6138534264 217464.67159212273 205918.27337232852 181075.42945981125 173143.59255078237 194027.50405523577 186524.33262205406 1.0825770559747716 1.2734607517181418 1.168103532779504 1.1867921506089485 1.1658782987459426 1.1039753927953815 0.9707871724528098 0.9282627639880933 1.04022623390582 1.0 17.509004320806472 2.4160113057225945 2.6007355534296157 0.9716747136375967 1.1807789918513754 0.75179433497415 0.05130335277407705 0.12125738663831662 1.6763034848924467 0.019232260498261017 0.015619235560491275 260.6221395283192 -2.4160113057225945 0.20910427821377864 EFSVTDAVPFPISLIWNHDSEDTEGVHEVFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFSVTDAVPFPISLIWNHDSEDTEGVHEVFSR 32 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 55.158 0.029806 77731000.0 19194.0 35900.0 37287.0 40105.0 44532.0 32868.0 45404.0 23851.0 32085.0 29845.0 False True 19090.661636653876 37094.909797991735 42536.685495586054 45182.28888794169 50202.88623815667 30595.912522949682 43207.63505987635 25630.88273292395 24178.081666973147 27940.266548409967 0.6832669832829599 1.3276505338172138 1.5224151645756845 1.61710300113486 1.7967933896111536 1.0950472669950546 1.5464288783721438 0.9173456770183376 0.8653489981951901 1.0 14.770058163583688 1.6721086497420357 6.332619248493929 0.9153126968608115 1.3886183400132273 0.32054299817873866 0.2933501005742874 0.15564768353854946 12.890101808996164 0.15368525048555487 0.0773495470180732 47.001167919971465 -1.6721086497420357 0.47330564315241574 EFTELLSQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 EFTELLSQDR 10 0 Q92754;Q92754-2 Q92754 TFAP2C Transcription factor AP-2 gamma 0 ;;; 217.64 1.6647e-08 543597000.0 305093.0 422077.0 406450.0 378547.0 399070.0 390117.0 381807.0 369691.0 482056.0 414444.0 False True 303450.4131870189 436125.57779406564 463674.6270732678 426471.01138670126 449889.19902679394 363149.13002663874 363337.53676562005 397279.21967285994 363259.7580194607 387993.8290966405 0.7821011326224888 1.1240528716899685 1.1950567052904775 1.0991695728245126 1.1595266864791725 0.9359662520204322 0.9364518441222962 1.023931799631552 0.9362513802480629 1.0 18.56567418148202 2.724859329314666 24.81725048718032 0.9701283913736016 1.0832222278851513 0.186607386268832 0.10870171816285468 1186.93713081794 2149905.044027555 0.035211499469267014 0.033368821919874427 530.7125153016985 -2.724859329314666 0.1130938365115497 EFTGAHIDIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFTGAHIDIDK 11 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 0 90.146 0.0076872 0.0 255940.0 263710.0 230720.0 239570.0 222460.0 286420.0 279450.0 254140.0 403410.0 296880.0 False True 254562.04747760753 272487.42793393845 263203.3705458096 269899.53743633477 250788.96237627638 266620.45956015727 265931.93589733145 273105.2172967712 303995.01091705245 277932.86422824475 0.9159120069678245 0.9804073681267345 0.9470034113333969 0.9710961608868506 0.9023364799720943 0.9592980675405213 0.9568207654598995 0.9826301688183625 1.0937713744690691 1.0 18.084376910831413 1.4624781795327972 3.9241183674751134 1.046828621630764 0.9492326971282712 0.6130184380903514 0.030979701843020527 0.12277878114266073 3.6708137412792023 0.019926685403402138 0.007409132903991148 29.00535462029289 -1.4624781795327972 -0.09759592450249288 EFTGS(ph)PPSSATK ddPTM_BT-474_Trastuzumab_2h_R1 6 EFTGSPPSSATK 12 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 EFTGS(0.992)PPS(0.006)S(0.002)ATK;EFTGS(0.749)PPS(0.221)S(0.03)ATK;EFTGS(0.749)PPS(0.237)S(0.013)ATK;EFTGS(0.928)PPS(0.064)S(0.008)ATK;EFTGS(0.994)PPS(0.005)S(0.001)ATK;EFTGS(0.998)PPS(0.002)SATK 215.93 4.2235e-11 6115250000.0 4143350.0 3878260.0 3529070.0 3346470.0 3450260.0 4377760.0 4196210.0 4655530.0 5150900.0 4437250.0 True False 4121042.663969459 4007345.539642321 4025932.3807736705 3770132.7588787023 3889630.159706779 4075135.7553385743 3993223.2912211227 5002949.288902331 3881529.7135238275 4154060.906079153 0.9920515748670478 0.9646814599607518 0.9691558385391085 0.9075776316522945 0.9363440372322418 0.9810004830152881 0.961281835174189 1.2043514531962916 0.9343940306324116 1.0 21.986090938191904 1.9426648608819863 24.99815890366515 1.0724199429591688 0.9571862401995593 0.23079017989839612 0.06824902549055262 275.2880244123223 120025.07648749468 0.026863216027691095 0.017335963744810994 87.63243126519814 -1.9426648608819863 -0.11523370275960942 EFTGS(ph)PPSSATKK ddPTM_BT-474_Trastuzumab_2h_R1 6 EFTGSPPSSATKK 13 1 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 EFT(0.022)GS(0.978)PPSSATKK;EFT(0.022)GS(0.975)PPS(0.002)SATKK;EFT(0.018)GS(0.981)PPS(0.001)SATKK;EFT(0.07)GS(0.911)PPS(0.018)S(0.002)ATKK;EFT(0.043)GS(0.946)PPS(0.003)S(0.003)AT(0.004)KK;EFTGS(0.986)PPS(0.013)SATKK 121.27 0.00015230000000000002 9797610000.0 9960610.0 9248040.0 8378540.0 8083510.0 8327600.0 10451930.0 10911090.0 9911110.0 16155320.0 11787310.0 True False 9906983.182487812 9555855.420841768 9558165.604424797 9106881.537179045 9388070.498447698 9729412.680296743 10383278.892288487 10650727.355796825 12174057.856197111 11035033.784176197 0.8977755189743084 0.8659561545289048 0.8661655044618739 0.8252699280574886 0.85075140521181 0.8816839957706643 0.9409376623003819 0.9651739690248659 1.1032189021164784 1.0 23.395587710701637 1.781372537074908 1.4612397543923512 1.0458924992877807 0.8611269073838143 0.8233437226241112 0.033623711954710866 0.14810494562217114 0.6029091863822122 0.025246996219158192 0.010152003425120086 60.44669177548375 -1.781372537074908 -0.18476559190396646 EFTLEFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EFTLEFSR 8 0 P16615-5;P16615-2;P16615-3;P16615;H7C5W9;P16615-4;O14983-3;O14983-2;O14983;Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 P16615-5;Q93084-4 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 0 91.064 0.029667 45562000.0 32087.0 47094.0 53239.0 36315.0 43308.0 44358.0 51091.0 28378.0 42621.0 40979.0 False True 31914.247157200847 48661.495321075825 60734.5884383164 40912.47527653916 48823.01709337308 41291.63586750038 48619.5331434266 30495.71046056419 32117.62564214 38363.68513611299 0.8318869014791003 1.2684259905800648 1.583127069853489 1.0664375732253863 1.2726362683915988 1.0763208936002662 1.2673321911314366 0.7949108734566687 0.8371882296548887 1.0 15.227453688858562 1.7383075882330288 8.642460980228234 0.8664015047635487 1.2063533696004873 0.37211387695990417 0.1884001310807794 0.10626237138317994 29.1372084369264 0.08969486332441767 0.04810524072357848 54.74035231276992 -1.7383075882330288 0.3399518648369386 EFTMAEIEHFVDPSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EFTMAEIEHFVDPSEK 16 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;; 177.88 2.8778000000000005e-09 261446000.0 947216.0 777653.0 710229.0 639026.0 664654.0 834388.0 795118.0 815155.0 1023510.0 858625.0 False True 942116.2943015905 803536.7100038354 810223.0697788651 719926.6260791888 749293.747187097 776708.7214980819 756655.1046942729 875986.005373219 771279.6748313442 803826.8173941532 1.17203889434262 0.9996390921725424 1.0079572517939215 0.8956240455040401 0.9321581850381135 0.9662637581761918 0.9413160749565415 1.0897695702825536 0.9595097577506553 1.0 19.616525184050648 4.824999221704972 2.338831913068022 0.9770141742381874 1.2490301964215358 0.5858300693706286 0.04956252022765912 0.6557888580353074 3.480170207699543 0.01373467000372936 0.39510061019990755 66834.27198368823 -4.824999221704972 0.2720160221833484 EFTMAEIEHFVDPSEKDHPK ddPTM_BT-474_Trastuzumab_2h_R1 5 EFTMAEIEHFVDPSEKDHPK 20 1 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;;; 332.13 4.6609999999999976e-80 2832464000.0 3777401.0 2693043.0 2661390.0 2505241.0 2661474.0 3544951.0 3402017.0 2707709.0 5231930.0 3196628.0 False True 3757063.8927247045 2782679.30827613 3036090.578783426 2822404.253731854 3000396.9381076894 3299896.8812870597 3237448.4407430063 2909771.995047703 3942590.955770203 2992616.464269077 1.2554445040261242 0.929848292121783 1.0145271253544905 0.9431226110764594 1.0025998900732884 1.1026795183034033 1.0818120127978803 0.9723170442285165 1.317439438980414 1.0 21.512975963244468 2.7414870025139013 24.434008364489273 1.0820141489193345 1.0180069596864805 0.06081715037741531 0.12025707199919691 572.078808950048 4776612.293307462 0.0362130948531668 0.03687880465721672 551.425699166972 -2.7414870025139013 -0.06400718923285398 EFVADETER ddPTM_BT-474_Trastuzumab_2h_R1 1 EFVADETER 9 0 O75582-3;O75582;O75582-2 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 0 119.86 0.0038793 0.0 114270.0 154610.0 111090.0 124740.0 125230.0 122570.0 136130.0 117730.0 123550.0 142430.0 False True 113654.78301659055 159756.10038628135 126730.50638841033 140532.0712101196 141177.29820363678 114097.02439874469 129544.87183289949 126515.6104208268 93102.75798518103 133339.99545954197 0.8523682832363354 1.198110888152494 0.9504313087130928 1.0539378730724485 1.0587768337405772 0.8556849278832023 0.9715379949312057 0.948819669483296 0.6982357968763414 1.0 17.024750057538125 2.743705868800921 24.876265714551977 0.9028995179873809 1.0301864266123428 0.23944475315007363 0.11310402507616797 580.236751874464 2805330.49745326 0.033102670094754684 0.03415371777051957 554.2502131451126 -2.743705868800921 0.12728690862496195 EFVEAVLELR ddPTM_BT-474_Trastuzumab_2h_R1 7 EFVEAVLELR 10 0 O75367-2;O75367-3;O75367;B4DJC3 O75367-2 H2AFY Core histone macro-H2A.1;Histone H2A 0 ;;;;;; 186.67 3.0571e-06 905538000.0 608793.0 848535.0 914570.0 754617.0 886498.0 998077.0 832272.0 890784.0 1152394.0 849360.0 False True 605515.3261312606 876777.9745247611 1043333.5064150542 850151.4348273755 999388.2656146904 929082.2862105404 792011.8237722095 957258.8253894993 868401.9399884633 795153.1176263185 0.76150783127008 1.1026530049232632 1.312116475792236 1.0691669515995075 1.2568500876888369 1.1684319228779807 0.9960494478554189 1.203867285645684 1.0921191412552167 1.0 19.60087317228027 4.725724211074918 4.540799816022152 1.1464401862690143 0.7403213174527937 0.5630102502870562 0.09834590262536559 0.11769913626461971 6.226358049425827 0.022028090769854743 0.14926506888854324 53177.0463172617 -4.725724211074918 -0.4061188688162206 EFVISDR ddPTM_BT-474_Trastuzumab_2h_R1 3 EFVISDR 7 0 Q14019;H3BT58 Q14019 COTL1 Coactosin-like protein 0 ;; 151.29 0.0043996 874110000.0 1275220.0 1393680.0 1299350.0 1386240.0 1380220.0 1513920.0 1507030.0 1263610.0 1540420.0 1425570.0 False True 1268354.3572102627 1440067.79630265 1482287.1858473376 1561737.8418656113 1555982.8357951252 1409266.273784349 1434129.2014863333 1357906.9946815663 1160804.1315704763 1334588.9021081205 0.9503708259575413 1.0790347454769889 1.1106694979299712 1.1702014301173085 1.165889236256416 1.0559553369268004 1.0745849895956565 1.017472116347298 0.8697840434135686 1.0 20.347963981479598 1.5461249848355882 2.924809114824001 0.9349659262318258 1.0928579777737828 0.4549521433185403 0.0656194273579596 0.197888087191808 3.7328132715199858 0.04766183736901118 0.017925614180994667 35.16616300413221 -1.5461249848355882 0.15789205154195696 EFVISDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EFVISDRK 8 1 Q14019;H3BT58 Q14019 COTL1 Coactosin-like protein 0 117.89 0.0031941 204900000.0 151170.0 246220.0 163450.0 200950.0 246190.0 325890.0 336730.0 269660.0 448410.0 364550.0 False True 150356.11751656607 254415.28385686685 186462.33926713158 226390.24939613242 277540.83721754665 303361.9913625433 320441.083466482 289783.3985057345 337905.36388615984 341284.1068930423 0.44055997475348996 0.745464786429683 0.5463551788702792 0.6633483506077318 0.8132252033187334 0.8888840272237357 0.9389276470671034 0.8490972554914549 0.9900999110751403 1.0 18.380613706217666 3.1533815585982827 1.4745712285463466 0.9253237820533775 0.5847169751417676 0.7967559964646027 0.0805915774100644 0.17265384430137518 0.7822936449920256 0.02713139707856796 0.03696635705165812 1423.578953247025 -3.1533815585982827 -0.34060680691160994 EFVPSRDEIEALIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFVPSRDEIEALIHR 15 1 E9PEW5;A0A0A0MQX1;Q9HD67-3;Q9HD67 E9PEW5 MYO10 Unconventional myosin-X 0 ; 83.729 0.0051683 69905000.0 34983.0 52303.0 43855.0 45314.0 48119.0 43585.0 46948.0 36206.0 52960.0 44745.0 False True 34794.65541497669 54043.87373716885 50029.40280550664 51050.747753850934 54246.66942634198 40572.071538054086 44676.94588122353 38907.87557034272 39908.71762764211 41889.33579187819 0.8306327793749102 1.290158287676819 1.1943231340327602 1.218705114053134 1.294999512426256 0.9685537087441833 1.0665470109909412 0.9288253163920175 0.9527178426968493 1.0 15.354295388190254 2.717357328644782 24.467931436248353 0.9817675003580891 1.1772023904224398 0.34017076232621335 0.12653167648750396 659.2766011391328 760783.3835497566 0.03964088823888786 0.03740942900789842 521.6237159506393 -2.717357328644782 0.19543489006435066 EFVSPSLT(ph)PPPAIAHPALPTIPER ddPTM_BT-474_Trastuzumab_2h_R1 2 EFVSPSLTPPPAIAHPALPTIPER 24 0 O94763-3;O94763;O94763-2 O94763-3 URI1 Unconventional prefoldin RPB5 interactor 1 1 EFVS(0.02)PS(0.128)LT(0.852)PPPAIAHPALPTIPER;EFVSPS(0.006)LT(0.994)PPPAIAHPALPTIPER 175.07 7.7964e-12 163311000.0 146477.0 165453.0 156533.0 154992.0 154660.0 152309.0 128821.0 127615.0 144621.0 137291.0 True False 145688.38410712444 170960.00308654932 178571.48579077362 174613.97130831212 174355.03425836063 141780.23732682088 122589.43608599098 137138.2793158396 108981.09237211556 128528.97083926134 1.1335061905173325 1.3301281568678578 1.389348133924573 1.3585572977681801 1.3565426776536589 1.1030994522171318 0.9537883582628359 1.0669834078679825 0.8479107212988393 1.0 16.97173405856642 2.561486578021224 3.2737359579393406 0.9836132002277378 1.3209994667412306 0.7912345997101916 0.08392094879999663 0.1141950261034401 2.355476875323635 0.02956249032028993 0.0268676155063733 364.32299040204555 -2.561486578021224 0.3373862665134928 EFVTHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFVTHPK 7 0 P28838-2;P28838 P28838-2 LAP3 Cytosol aminopeptidase 0 ; 84.244 0.021688 646390000.0 2207540.0 2265870.0 2177120.0 2037400.0 2033260.0 2622630.0 2424550.0 2192860.0 3033990.0 2509390.0 False True 2195654.8499207487 2341288.1132026603 2483639.572133725 2295334.63110067 2292183.6089237942 2441333.76110696 2307265.2538195583 2356502.3483174574 2286303.8178831204 2349238.5818031365 0.9346240381577141 0.9966157253409427 1.057210447406934 0.9770547141869715 0.9757134190961778 1.0392021397984774 0.9821332203937491 1.003091966295201 0.9732105694127877 1.0 21.163761806005756 4.731326526715141 5.77407085760762 1.0014051500563814 0.9327949799425713 0.35926843305438105 0.026408093376952844 0.13595334821837565 19.78379421339257 0.006120368793678086 0.0365334149128259 53867.46358144474 -4.731326526715141 -0.0686101701138101 EFWGDIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EFWGDIAK 8 0 Q9NR19;Q9NR19-2;F8WCJ4;C9IYL0;B4DEH9;C9JY31 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ; 111.04 0.0077015 249180000.0 349990.0 384910.0 365700.0 322980.0 275520.0 388500.0 408610.0 349210.0 536990.0 421450.0 False True 348105.6927275444 397721.49666699156 417187.38127861783 363869.23488411476 310605.8388650168 361643.9094306304 388843.9732582165 375269.8234524498 404656.00979734823 394552.7001785015 0.8822793319372957 1.0080313643451342 1.0573679538623766 0.9222322764981584 0.7872353648181704 0.9165921542724643 0.9855311421827749 0.9511272468359036 1.0256069965159935 1.0 18.589858487497576 -0.8582587197119859 7.613803208438521 1.0000083004474762 0.9487662622367212 0.04179587980126098 0.07404078420372534 0.0 0.0 0.07477115540835348 0.01762373034213332 0.13859299509537243 0.8582587197119859 -0.051242038210755014 EFWPQEVWSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EFWPQEVWSR 10 0 E9PNM1;P37268;A0A1W2PQ47;P37268-4;P37268-3;P37268-2;P37268-5 E9PNM1 FDFT1 Squalene synthase 0 ; 139.54 9.5108e-05 248306000.0 161476.0 265050.0 274690.0 236370.0 266660.0 239270.0 258790.0 225850.0 233990.0 235120.0 False True 160606.6311576703 273872.0290238915 313363.9643517185 266294.41776443773 300617.5703823513 222729.82808099597 246271.3390261958 242704.07384306224 176326.299805362 220114.4403036405 0.7296505896483612 1.2442256339297604 1.4236411019624309 1.2097998540990473 1.3657330703413162 1.011881945472308 1.1188331791702204 1.1026267677316404 0.8010664796099964 1.0 17.747894268785217 1.4275049236480815 3.538160424494748 0.9027780796538137 1.173363424218868 0.21706984482192138 0.1882960873928851 0.32802785979338506 7.276022064746598 0.14078165313058405 0.04877469316165936 26.761159324712676 -1.4275049236480815 0.27058534456505423 EFYHEVHRPSHFLNFALLQEGEVYSADREDLYA ddPTM_BT-474_Trastuzumab_2h_R1 1 EFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 33 2 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 69.094 0.0013446 66264000.0 13531.0 19461.0 15829.0 17504.0 15798.0 16489.0 14435.0 7141.6 17387.0 12056.0 False True 13458.150599435436 20108.747620577073 18057.585611865557 19720.00460527446 17809.781657917865 15349.154240930928 13736.723902945001 7674.542456309998 13102.20682386356 11286.575758339108 1.1924033371673295 1.7816517649934425 1.5999171049309333 1.7472088104936783 1.577961468495799 1.3599478326799141 1.2170851635666022 0.6799708450669503 1.160866422589063 1.0 13.462320231844346 2.238709349672034 2.0110623061175597 0.9182253007436979 1.5957968044911217 0.6622130491661705 0.19319686105332015 0.17127022294105465 1.399235779668065 0.08979052568681023 0.0589127603537883 173.26440426266942 -2.238709349672034 0.6775715037474238 EGAAHAFAQYNLDQFTPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGAAHAFAQYNLDQFTPVK 19 0 P47755;F8W9N7;C9JUG7;A0A0D9SET8;P47755-2 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 0 159.75 3.2799000000000004e-11 550740000.0 206800.0 186870.0 198940.0 183430.0 184240.0 248850.0 212090.0 173400.0 245240.0 231750.0 False True 205686.61177763995 193089.8549846994 226949.02278252176 206652.21919249842 207701.87192396447 231647.58522989033 201830.39643752013 186339.9885073588 184803.8880476387 216959.5165888428 0.9480414365387531 0.8899810343448613 1.0460431805469494 0.9524920706019198 0.957330082540595 1.0676995822630022 0.9302675430458593 0.858869854787192 0.8517897299608119 1.0 17.72706634353414 2.002088467197307 24.997427759239564 0.8895462155411838 0.9761906539334767 0.22320357132187496 0.060796143139882936 79.52138603277155 951802.9747892958 0.0223363220837614 0.01638704789525016 100.48204546243018 -2.002088467197307 0.08664443839229286 EGAAHAFAQYNMDQFTPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGAAHAFAQYNMDQFTPVK 19 0 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 ; 196.06 8.5261e-16 836110000.0 669120.0 560970.0 555100.0 555490.0 529520.0 736410.0 663240.0 586670.0 838570.0 696200.0 False True 665517.5322662203 579641.5473364738 633253.2549843062 625814.9770443273 596951.2332890661 685503.7100226787 631156.5473771555 630450.2944498976 631915.659762309 651767.919953193 1.0210958715396958 0.8893373386313659 0.971593163145838 0.9601806991195124 0.9158953900829246 1.0517604334866748 0.9683762088543454 0.9672926131362427 0.9695409062288465 1.0 19.31399881874493 2.7893941161419824 24.99999796276392 0.9856507306818063 0.9497454974186806 0.19133525296823806 0.03992922347360621 641.8823631795425 315677.6080503928 0.011636630692417809 0.01234250425120381 615.7353904659111 -2.7893941161419824 -0.03590523326312567 EGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSR 39 1 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 170.47 1.4561e-18 30628000.0 9798.4 13600.0 9472.6 13817.0 12104.0 11268.0 14037.0 11536.0 17670.0 13819.0 False True 9745.646503104575 14052.667778626394 10806.259742684797 15566.230783311077 13645.372653971264 10489.069682018895 13357.976683452645 12396.874898621054 13315.465265869274 12937.059588958868 0.7533123300616159 1.0862335202212132 0.8352948881759343 1.2032278800505856 1.0547506997352711 0.8107769474116662 1.0325357622108358 0.9582451725893855 1.0292497436769448 1.0 13.659222129918719 4.75251061039321 24.130927877771747 0.9964532578087165 0.7533120613420625 0.3172994204705909 0.1088634684576006 1786.5751049960732 3090358.922258842 0.024825825716011062 0.49195384222090227 56560.15753209196 -4.75251061039321 -0.243141196466654 EGAGS(ph)PAAPGTLPLEK ddPTM_BT-474_Trastuzumab_2h_R1 7 EGAGSPAAPGTLPLEK 16 0 O60248-2;O60248 O60248-2 SOX15 Protein SOX-15 1 EGAGS(1)PAAPGTLPLEK;EGAGS(1)PAAPGTLPLEK;EGAGS(1)PAAPGTLPLEK;EGAGS(1)PAAPGTLPLEK;EGAGS(1)PAAPGTLPLEK;EGAGS(1)PAAPGTLPLEK;EGAGS(1)PAAPGTLPLEK 332.36 1.4285999999999994e-71 4742554000.0 8800550.0 8170940.0 7350590.0 6905760.0 6979790.0 9729000.0 9811740.0 8833200.0 11946920.0 9868400.0 True False 8753168.816633027 8442904.79846247 8385489.179526365 7780028.507936477 7868624.884043458 9056457.129602574 9337108.651713308 9492378.238080759 9002761.64652626 9238590.263237687 0.9474571950077433 0.9138737142677039 0.9076589545153884 0.842122909043262 0.8517127245435256 0.9802856140985211 1.0106637902178266 1.027470422176092 0.9744735278877082 1.0 23.13924129375765 2.588774247856621 4.869387703247624 1.0067075453905494 0.892200726958894 0.7484412714344143 0.030878946586101273 0.11834995035182638 4.298698519115586 0.011184545879591326 0.01044551792130401 387.94865261380386 -2.588774247856621 -0.11450681843165544 EGALCEENMR ddPTM_BT-474_Trastuzumab_2h_R1 6 EGALCEENMR 10 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;; 262.83 4.5425e-17 6792660000.0 2206340.0 2513300.0 2396540.0 2479120.0 2365800.0 2436250.0 2507870.0 2260560.0 2821320.0 2555890.0 False True 2194461.310587421 2596953.671178065 2733952.0009008995 2792976.3378101 2667070.606804793 2267837.771815629 2386554.747106249 2429254.4660910903 2126043.4897511215 2392770.9119924777 0.9171213590021776 1.0853331834494606 1.142588280055744 1.167256056069475 1.1146368394222512 0.9477872538692742 0.9974021061293108 1.0152474078967437 0.8885278064420925 1.0 21.19025084670481 2.7407828917220685 24.93244334632175 0.9767286321403911 1.0931102620922724 0.39418634805539665 0.0710712890334702 207.7457281092302 2330777.920582947 0.02300152912813426 0.023322460351132675 550.5324107880705 -2.7407828917220685 0.11638162995188128 EGAPIEPDPPVSHWKPEAVQYYEDGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGAPIEPDPPVSHWKPEAVQYYEDGAR 27 1 Q96HS1;Q96HS1-2;F5GXG4 Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial 0 51.956 0.060029999999999986 166950000.0 262610.0 317970.0 316690.0 259550.0 322300.0 476910.0 347700.0 306400.0 418500.0 354750.0 False True 261196.1369387138 328553.43923307577 361277.19928117446 292409.0033877392 363342.99457823305 443942.33422538434 330880.42265701236 329265.1238676741 315366.28261269344 332109.551283245 0.7864758358483598 0.9892923523685824 1.0878253813695753 0.8804594816917911 1.0940456038506106 1.3367346181704993 0.9962990265667357 0.991435273678278 0.9495851034519879 1.0 18.341299688969162 4.714605995010607 3.012871311010465 1.0433015855937322 0.7518026526478093 0.3050685134879907 0.1153046397230907 0.4494867441411018 6.225739912980465 0.029545107224778096 0.30539080328149504 51832.95814006515 -4.714605995010607 -0.2914989329459229 EGAS(ph)PVTEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGASPVTEVR 10 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 EGAS(0.998)PVT(0.002)EVR;EGAS(1)PVTEVR;EGAS(0.985)PVT(0.015)EVR 145.95 3.0979e-05 1133610000.0 1051140.0 1123730.0 1031860.0 1011380.0 1002140.0 1132510.0 1251360.0 999650.0 1353020.0 1110660.0 True False 1045480.779032634 1161132.6737408708 1177136.918912099 1139420.6043008722 1129756.588850856 1054222.2493417852 1190826.9361405787 1074248.9591198447 1019586.3505391304 1039776.7279161355 1.0054858422614732 1.1167134660418399 1.1321054677490747 1.0958319932630514 1.0865376753671467 1.0138929070422653 1.1452717724575063 1.033153493705131 0.9805820068530775 1.0 19.987842339892914 1.502750658861104 5.291165059936175 0.9942959435593636 1.0861786610718027 0.4425242745103557 0.043145055500401014 0.13585110475229167 8.475987648684518 0.02502338199965359 0.010787437254241677 31.82369905677855 -1.502750658861104 0.09188271751243915 EGASGRPGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGASGRPGSPK 11 1 E7EMV7;A0A0A0MRZ4;Q15025-7;Q15025-8;Q15025-5;Q15025-6;Q15025-4;Q15025-3;Q15025-2;Q15025;E7EW15 E7EMV7 TNIP1 TNFAIP3-interacting protein 1 1 EGAS(0.001)GRPGS(0.999)PK;EGASGRPGS(1)PK;EGAS(0.014)GRPGS(0.986)PK 76.211 0.041533 768710000.0 1154100.0 952420.0 879090.0 800290.0 816940.0 984860.0 1053410.0 1037150.0 1542630.0 1021560.0 True False 1147886.4538325632 984120.723949951 1002858.2308127432 901606.6319444169 920972.4666172568 916778.9463110699 1002452.533883013 1114547.3995409864 1162469.50668296 956363.1661984824 1.2002620912256383 1.029024076556403 1.048616536330103 0.9427450405982057 0.9629944974544526 0.9586096356630309 1.048192328305297 1.1654018462163094 1.2155105380142825 1.0 19.86719904095007 1.8578337484117433 4.728027593390175 1.1422079997149726 1.017709184396219 0.21808396458355972 0.0853445277793302 0.2853198817667415 9.261139880922467 0.04025990877252369 0.023113732785854515 72.08314859914235 -1.8578337484117433 -0.12449881531875362 EGATVYATGTHAQVEDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGATVYATGTHAQVEDGR 18 0 J3QKT4;J3KQ22;E2QRB3;P32322-2;P32322;P32322-3;J3QR88;J3QLK9;J3QL23;J3QL32;J3QL24 J3QKT4 PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial 0 ;;; 226.74 3.3491e-19 4418690000.0 1230600.0 1278750.0 1439730.0 1207470.0 1604310.0 2363930.0 1253400.0 1105460.0 1565520.0 1549240.0 False True 1223974.5863325123 1321312.4207293012 1642431.469642503 1360335.5781953123 1808609.3690096373 2200517.083192665 1192768.2535470224 1187955.038612139 1179718.5728932463 1450366.1768289048 0.8439072876124447 0.9110198802472297 1.1324253804880722 0.9379256079796094 1.2470018936624674 1.5172148374308465 0.8223911123981827 0.8190724918926997 0.8133936048292265 1.0 20.467985755634313 EGCTEVSLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGCTEVSLLR 10 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 111.31 0.004118899999999999 252890000.0 65286.0 126510.0 128760.0 145020.0 138040.0 129550.0 121460.0 98412.0 106160.0 121010.0 False True 64934.50742995648 130720.80887309008 146888.28879801705 163379.51713076443 155618.5757728184 120594.51342789741 115584.5157777416 105756.00316601039 79998.29047111944 113287.03819812664 0.5731856747494195 1.153890250396287 1.2966027811683583 1.4421730828996653 1.3736662044307182 1.0645040716572605 1.020280145161858 0.9335225357472468 0.7061557239338465 1.0 16.78962327825169 2.021381376010234 1.7828849429472469 0.8646772134077941 1.1853590030761703 0.2135057972959139 0.23337640182551134 0.5380022555971429 3.204358178354767 0.1476156889437968 0.07542086540908359 105.04644898826163 -2.021381376010234 0.3206817896683761 EGDELEDNGKNFYES(ph)DDDQKEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGDELEDNGKNFYESDDDQKEK 22 2 O00203;O00203-3 O00203 AP3B1 AP-3 complex subunit beta-1 1 EGDELEDNGKNFYES(1)DDDQKEK;EGDELEDNGKNFY(0.002)ES(0.998)DDDQKEK;EGDELEDNGKNFY(0.089)ES(0.911)DDDQKEK;EGDELEDNGKNFYES(1)DDDQKEK 180.71 2.726e-17 1381110000.0 1915830.0 979450.0 788110.0 762215.0 756012.0 1494470.0 1604460.0 1492800.0 3385200.0 1432880.0 True False 1905515.3841487246 1012050.4011599728 899069.0376250783 858711.3408483359 852285.6469658073 1391160.8065039748 1526846.14016759 1604200.3162848046 2550962.8193560047 1341432.3716497123 1.4205079767124564 0.7544550307186482 0.6702306106713308 0.6401450859518775 0.6353549123893995 1.0370711456687942 1.1382207351160412 1.1958860917542466 1.9016708357938275 1.0 20.355342892245407 2.0235452184779152 1.5335349314247726 1.4132397002759693 0.8112172957538177 0.36954080612292817 0.30388071490342716 0.398903858441867 1.7551785714034476 0.19585083771171957 0.0962168905566402 105.57114175258859 -2.0235452184779152 -0.6020224045221516 EGDFVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDFVLR 7 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 107.43 0.03986 830540000.0 665070.0 684260.0 622620.0 684750.0 662250.0 765920.0 737620.0 699430.0 873530.0 814550.0 False True 661489.3370162238 707035.1804560946 710279.4840899451 771439.2797910016 746583.6120367204 712973.7531817458 701938.5026179637 751625.0182335749 658260.2362023076 762564.7216286603 0.8674533692083695 0.927180553207382 0.9314350165228649 1.0116377769789655 0.9790429466002466 0.9349681842860501 0.9204969528603248 0.9856540657011765 0.8632188423251699 1.0 19.540500263947393 4.684207690089951 1.7973664529203142 0.9552699623330698 0.8458314164818082 0.28677741294333003 0.0414574011276291 0.9680729569586185 3.4689140149789726 0.010463227652578346 0.17337803412128686 48328.986764924965 -4.684207690089951 -0.10943854585126167 EGDIIPPLTGAT(ph)PPLIGHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDIIPPLTGATPPLIGHLK 20 0 Q12888;Q12888-2;A6NNK5;Q12888-3;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 EGDIIPPLTGAT(1)PPLIGHLK;EGDIIPPLTGAT(1)PPLIGHLK 193.96 2.0084e-17 256960000.0 433920.0 416260.0 390620.0 352670.0 366420.0 455240.0 459300.0 424840.0 626880.0 530110.0 True False 431583.8229330445 430114.9624655167 445615.9006700946 397317.9858399298 413081.4150585054 423770.33031969116 437081.9043036118 456543.7180938079 472393.8237616371 496277.92594999506 0.8696413851309012 0.8666816313503637 0.8979160211832489 0.8005957248236818 0.8323590340387765 0.8538971978423039 0.8807200188622779 0.9199355728342615 0.9518735350909713 1.0 18.920788760563465 1.4071987931559948 1.1752733705037923 0.9957139386970172 0.8524272149779692 0.8055883240298952 0.024343054673479223 0.18975259047166373 0.5112902104303023 0.023650461152400288 0.008003001383007483 25.538700389195707 -1.4071987931559948 -0.14328672371904794 EGDIVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGDIVKR 7 1 P25705;P25705-2;P25705-3;K7EK77;K7ERX7;K7EJP1;K7EQH4 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial 0 85.359 0.033461000000000005 619960000.0 558780.0 687060.0 672620.0 583670.0 790610.0 1188100.0 647650.0 553160.0 967200.0 884410.0 False True 555771.5905662943 709928.3767634593 767319.0494821547 657562.5621549662 891289.4971873945 1105969.4434865683 616320.6952367391 594439.6080895656 728846.5198160023 827966.196618504 0.6712491317110777 0.8574364263455164 0.926751662828702 0.79419010684315 1.076480538489988 1.3357664213870772 0.7443790552728529 0.7179515426080387 0.8802853580166482 1.0 19.659212342443585 EGDKHTLSK ddPTM_BT-474_Trastuzumab_2h_R1 7 EGDKHTLSK 9 1 P06703;R4GN98 P06703 S100A6 Protein S100-A6;Protein S100 0 ;;;;;; 119.16 0.00052456 9325300000.0 8480406.0 10851915.0 11173410.0 12041480.0 10905830.0 12345410.0 18286050.0 11803840.0 22768360.0 16130870.0 False True 8434748.436357683 11213114.430653846 12746529.006979275 13565930.133359253 12294622.806581233 11492000.864669245 17401483.90200537 12684702.479485009 17157402.758393183 15101384.066267371 0.5585414157632579 0.7425223000387808 0.8440636269526951 0.898323628736923 0.8141388069219612 0.7609899075634686 1.1523105316469524 0.8399695301981882 1.1361476989859778 1.0 23.84817744515481 5.630373005429769 0.3148966735842109 1.0207682308902395 1.7534227377862586e-15 0.5781498607417707 0.11209290426282605 9.641034529372897 0.5022853865988774 0.11074184168160664 4.187103010287346 426946.0554113397 -5.630373005429769 -1.0207682308902377 EGDKHTLSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGDKHTLSKK 10 2 P06703;R4GN98 P06703 S100A6 Protein S100-A6;Protein S100 0 65.5 0.041308 406600000.0 295950.0 496460.0 538090.0 658600.0 653050.0 590380.0 1142600.0 513660.0 1251300.0 812730.0 False True 294356.6380831362 512984.3709835921 613848.3948378759 741978.6924722211 736212.0465693922 549568.4202050334 1087328.0728441265 551991.9175126291 942933.8815609639 760860.8755868394 0.38687314268341605 0.6742157304223795 0.806781390046406 0.9751831330529976 0.967604026165183 0.7222981728179417 1.4290760738689428 0.725483377085051 1.239298683657107 1.0 19.537273153592395 4.789451877488825 0.7864403217392729 1.0130932710763383 5.024697597191176e-15 0.5105973184422967 0.19783624753821621 2.2277656306836375 0.999671795009406 0.0667898816807072 2.0218963875434652 61581.72889752542 -4.789451877488825 -1.0130932710763332 EGDLIAAQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDLIAAQAR 10 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 152.86 4.0212e-05 1015730000.0 2329290.0 2742740.0 2492630.0 2354120.0 2262460.0 2539960.0 2476830.0 2381340.0 3033880.0 2471430.0 False True 2316749.3614484477 2834030.44287866 2843570.637671642 2652151.3506266414 2550570.870348961 2364378.5436227107 2357016.27049056 2559047.6829995043 2286220.9259091965 2313701.221502327 1.0013174302359324 1.2248904121848863 1.2290137599638995 1.1462808274374134 1.1023769390123892 1.0219031401502559 1.0187211073693034 1.1060406846039825 0.9881227985109992 1.0 21.141771144189985 3.029812005346477 2.725680461605237 1.0390844226276208 1.161786986826661 0.42841886459034206 0.06624802977281868 0.2676069422680366 4.039836589696648 0.020897193924163036 0.02468752072494081 1071.0555731014701 -3.029812005346477 0.12270256419904024 EGDLLFTVAKDPIVNVWYSVNGER ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDLLFTVAKDPIVNVWYSVNGER 24 1 Q13347;Q5TFK1 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 ; 105.46 0.0026134 759870000.0 122515.0 185758.0 156837.0 151106.0 169371.0 175649.0 166295.0 178275.0 210630.0 169554.0 False True 121855.39285269617 191940.84273691772 178918.28634835803 170236.00410675287 190939.392909432 163506.79806327116 158250.67554140917 191578.78576210732 158723.0587973992 158732.9185575173 0.7676756274631311 1.2092062848788827 1.127165606065049 1.0724681789623076 1.2028972606601738 1.0300749179762863 0.9969619218213179 1.2069253655957208 0.9999378845912512 1.0 17.276241824505792 4.750146088065971 24.781686456454484 1.1024198379478147 0.7676754031956179 0.5717745736457038 0.08442598159882024 1066.3673392204269 2280944.799111181 0.019111622620224224 0.30535509875021505 56253.05174979445 -4.750146088065971 -0.33474443475219684 EGDNVNYDWIHWDPEHSYEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDNVNYDWIHWDPEHSYEFK 21 0 Q04446;E9PGM4 Q04446 GBE1 1,4-alpha-glucan-branching enzyme 0 ; 256.07 1.1271e-36 309340000.0 124947.0 110439.0 104311.0 97214.0 95500.0 141198.0 139682.0 66651.0 170182.0 127850.0 False True 124274.29923491686 114114.89535321471 118997.08211253454 109521.28243242399 107661.35892715256 131437.31460433995 132925.04802294174 71624.83606692031 128242.92642196726 119690.50354210818 1.0382970708381727 0.9534164530694624 0.9942065459743873 0.9150373604526898 0.8994979195594772 1.098143217002167 1.110573053744214 0.598417033492737 1.0714544815733877 1.0 16.868949165262897 EGDQIVGATIYFDNLQSGEVTQLLNTMGHHTVGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDQIVGATIYFDNLQSGEVTQLLNTMGHHTVGLK 35 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2;E9PQE3 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 254.47 5.106499999999998e-60 317020000.0 168448.0 185562.0 201708.0 178046.0 172276.0 253221.0 235560.0 149690.0 283670.0 215942.0 False True 167541.09468433217 191738.31899540214 230106.73312263424 200586.60534453235 194214.32744014793 235716.42828811734 224165.06287341376 160860.62791041832 213763.329483256 202160.39668275244 0.8287532940848554 0.9484464917047748 1.1382384329396504 0.9922151352883927 0.9606942340191676 1.1659871673976971 1.1088475614004307 0.7957079158429566 1.0573946875396762 1.0 17.625140874716973 4.605528650076307 3.8784887128942445 1.0155896403401958 0.8310874942678051 0.2632209395079764 0.10051452064588921 0.3553543192068757 8.453763612608451 0.026069643383524955 0.13726660365859675 40320.754486085636 -4.605528650076307 -0.18450214607239068 EGDVDVS(ph)DS(ph)DDEDDNLPANFDTCHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDVDVSDSDDEDDNLPANFDTCHR 25 0 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 2 EGDVDVS(1)DS(1)DDEDDNLPANFDTCHR;EGDVDVS(1)DS(1)DDEDDNLPANFDTCHR 144.43 1.6012e-07 988270000.0 702820.0 609130.0 488740.0 554760.0 541060.0 623980.0 602320.0 633150.0 840650.0 658540.0 True False 699036.0952106422 629404.5238231387 557550.3437957659 624992.5591191757 609960.7838861269 580845.7312909253 573183.4805141551 680398.8680705547 633483.0716328804 616511.4133955404 1.1338575085910951 1.0209130117422924 0.9043633770297349 1.0137566726898435 0.9893746825004669 0.9421491941111351 0.9297207935815017 1.1036273672909693 1.0275285385940638 1.0 19.23376807773764 -0.7986478858354958 4.627065912367168 0.9999999831134562 1.0061133329026488 0.0007558162441574368 0.0686469886816986 1.2167248804299996e-08 3.067845575136113e-09 0.06804399952674171 0.016038080282266064 0.15898352213935044 0.7986478858354958 0.006113349789192646 EGDVLTLLESER ddPTM_BT-474_Trastuzumab_2h_R1 6 EGDVLTLLESER 12 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 ;;;;; 282.06 9.4707e-28 3826330000.0 1199717.0 1314704.0 1205532.0 1258050.0 1226141.0 1309205.0 1289095.0 1179935.0 1580525.0 1295803.0 False True 1193257.8569730897 1358463.1278846492 1375260.4269280117 1417319.001009226 1382282.78844291 1218702.739887075 1226736.5500288806 1267987.741288526 1191025.7916999443 1213103.7431472382 0.9836404047994602 1.1198243642050723 1.1336709120689705 1.1683411324180555 1.1394596680220928 1.0046154310968582 1.0112379563237304 1.0452426253330145 0.9818004424007336 1.0 20.21027150257244 2.7330653436393693 24.640722898579366 1.014369599013136 1.1142581039460746 0.5159953815938703 0.04832623393904416 319.5884794629792 1433024.3301121898 0.01588986887654289 0.015384511989268811 540.8356905781444 -2.7330653436393693 0.09988850493293855 EGDVTSGMVKDPPDVLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGDVTSGMVKDPPDVLDR 18 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ; 135.29 7.9522e-06 860830000.0 707050.0 689110.0 624520.0 586070.0 616620.0 746520.0 695900.0 718260.0 1044770.0 776800.0 False True 703243.3213606407 712046.6097742089 712446.9875748492 660266.4019088896 695142.9020069191 694914.829519058 662236.6584038404 771860.2084503773 787300.4327007496 727223.9589480606 0.967024412091554 0.9791297454008446 0.9796803017950804 0.9079271849953541 0.9558855885502628 0.9555719678491641 0.9106364693508926 1.0613789589205553 1.0826106909893212 1.0 19.47204020544044 1.68206941255775 7.143738730888999 1.0537536523646687 0.9519331304723434 0.6783708911865571 0.03049033332798511 0.06847595138793054 6.874735892423495 0.015101397360218417 0.007790834658659342 48.09162063372077 -1.68206941255775 -0.10182052189232527 EGDYVLFHHEGGVDVGDVDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGDYVLFHHEGGVDVGDVDAK 21 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 129.46 9.5218e-06 791990000.0 869610.0 751590.0 657230.0 612720.0 618600.0 892280.0 861600.0 503080.0 1212200.0 781190.0 False True 864928.1163827548 776606.2188042498 749762.2712544324 690290.2891764038 697375.0432705402 830598.7838011921 819921.1163683698 540622.3841884786 913469.5526478046 731333.7853895931 1.1826721719440239 1.0619039272068354 1.025198460994144 0.9438785722290611 0.9535660148656163 1.135731454494091 1.1211311889981739 0.7392279626470155 1.2490460182434822 1.0 19.480170486111383 4.699076714743117 1.8548471313913746 1.0016618724542756 1.2305207097537618 0.11074178323448947 0.12973086195814146 1.4922248315696256 5.655122407753611 0.03367884201977442 0.5770954003452897 50012.286999088756 -4.699076714743117 0.2288588372994862 EGEDGDQPT(ph)TPPKPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGEDGDQPTTPPKPLK 16 1 P18858;P18858-3;P18858-2;M0R0Q7;B4E135 P18858 LIG1 DNA ligase 1;DNA ligase 1 EGEDGDQPT(0.5)T(0.5)PPKPLK 118.46 0.00043786 1345000000.0 1129100.0 718040.0 578810.0 532590.0 491620.0 1084200.0 978530.0 909820.0 1391700.0 871540.0 True False 1123021.0510548032 741939.5273356535 660301.4168932913 600015.8393923173 554224.8929399663 1009251.8059322763 931194.7655523914 977715.3883723494 1048734.1828245767 815917.5710370663 1.3763903253454821 0.9093314737573509 0.8092746624564291 0.7353878145186546 0.679265789356053 1.2369531454623215 1.1412853437741302 1.1983016705102099 1.2853432994359841 1.0 19.638063884154597 2.7181028074756295 24.72191901395219 1.1829629416639862 0.8879413295633827 0.33440210909028933 0.18997129393751042 793.7048028466545 959138.8771912399 0.0629726971166972 0.05943642561405801 522.5198668098186 -2.7181028074756295 -0.2950216121006035 EGEDGDQPTT(ph)PPKPLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGEDGDQPTTPPKPLK 16 1 P18858;P18858-3;P18858-2;M0R0Q7;B4E135 P18858 LIG1 DNA ligase 1;DNA ligase 1 EGEDGDQPT(0.15)T(0.85)PPKPLK;EGEDGDQPT(0.094)T(0.906)PPKPLK;EGEDGDQPT(0.154)T(0.846)PPKPLK 176.1 5.3121e-09 2732290000.0 3625550.0 2097380.0 1961840.0 1558080.0 1648160.0 3324840.0 3071490.0 2894270.0 4473370.0 2893550.0 True False 3606030.441636473 2167190.025407014 2238050.019381031 1755332.7682464602 1858043.4065903234 3095001.636631494 2922910.294468758 3110255.1242052675 3370967.903586962 2708881.161707208 1.3311881276341624 0.8000314137225547 0.8261898126127294 0.6479917956756004 0.6859080541648183 1.1425387279377521 1.0790101595400603 1.1481696458936217 1.244413358267252 1.0 21.369265673393333 2.7191206472927165 24.266247687667388 1.1295186518266829 0.8415633714327343 0.34006735275201894 0.18342207410565534 618.3057472686072 771808.5283292697 0.06008945451388798 0.05673947230170891 523.7459133372488 -2.7191206472927165 -0.2879552803939486 EGEELVMDEEAYVLYHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGEELVMDEEAYVLYHR 17 0 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 0 ; 183.41 6.9298e-10 83281000.0 108500.0 110949.0 96642.0 100373.0 100065.0 124365.0 105722.0 102848.0 154145.0 117251.0 False True 107915.84805548334 114641.87039491328 110248.35357267756 113080.21150852444 112807.68461827791 115767.94027372033 100607.8229627399 110523.04001156196 116158.03018717699 109767.9407963686 0.9831271979099883 1.0444021229075104 1.0043766219246126 1.0301752104314361 1.0276924555553828 1.0546607637332142 0.9165501532854505 1.0068790505653573 1.05821453280847 1.0 16.744097231806833 EGEEPTVYS(ph)DEEEPKDESAR ddPTM_BT-474_Trastuzumab_2h_R1 7 EGEEPTVYSDEEEPKDESAR 20 1 O00264;O00264-2 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 1 EGEEPT(0.001)VYS(0.999)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPT(0.01)VYS(0.99)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR 334.43 3.6054999999999994e-80 41401790000.0 10021790.0 8381870.0 7969440.0 5147290.0 8214610.0 12842940.0 8561490.0 8250080.0 13725410.0 9861400.0 True False 9967833.796165554 8660855.476002583 9091467.880385738 5798936.3862364665 9260691.891691912 11955137.786828864 8147338.020632119 8865742.862657387 10342966.616571289 9232037.009230692 1.0797003723229415 0.9381304978893595 0.9847737689196431 0.6281318392071409 1.0031038526419 1.2949620733620835 0.8825070796928097 0.9603235833860865 1.1203341804446656 1.0 23.138217576770153 3.0174416595777487 24.977796859274566 1.0398508815508287 0.9028968640355098 0.17198222758298232 0.1479626890154245 458.66571385577 656839.9253403154 0.04387133717309215 0.05242627124466345 1040.9782596790121 -3.0174416595777487 -0.13695401751531888 EGEEQLQTQHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGEEQLQTQHQK 12 0 P30876;C9J2Y9;C9J4M6 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2;DNA-directed RNA polymerase 0 110.31 0.0015040999999999998 261250000.0 174790.0 129350.0 134620.0 116870.0 143370.0 193880.0 185250.0 164330.0 224740.0 158030.0 False True 173848.9500609945 133655.33655627366 153573.3258619837 131665.73001704895 161627.319679433 180477.53194442863 176288.74977627746 176593.13905083196 169355.83836171246 147944.39010371026 1.1750966017645206 0.903416050196835 1.0380476458372467 0.8899677096559738 1.0924869781553117 1.219901152168814 1.1915879314700446 1.1936453888318352 1.1447263275274757 1.0 17.17469546652119 3.0046648581446083 24.009349285953324 1.16667330554329 0.9964688560889237 0.3554081015692342 0.09277989130689339 70.83478137237805 364568.0037956248 0.024901659411044295 0.029646444020147635 1010.7991269651441 -3.0046648581446083 -0.1702044494543664 EGEETEGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGEETEGSEEDDKENDKTEEMPNDSVLENK 30 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 EGEET(0.007)EGS(0.993)EEDDKENDKTEEMPNDSVLENK 280.37 8.137099999999998e-72 1576000000.0 574190.0 243080.0 201540.0 129530.0 160840.0 343760.0 297280.0 281880.0 672560.0 316060.0 True False 571098.624838506 251170.77085503683 229915.08018291657 145928.48471898993 181322.0206266308 319996.68032399827 282899.43068011705 302915.31695763755 506816.59984227695 295888.7802074205 1.9301124714433615 0.8488688576801189 0.7770320997698668 0.4931869488822551 0.6128046507864291 1.081476222584979 0.9561005675233856 1.023747222673639 1.7128618377722677 1.0 18.17469546652119 1.4168054789908915 7.475282654798516 1.3657732601769241 0.9280152038970777 0.1312433213683486 0.40010933765611695 0.4068330472505007 39.039518559279536 0.25922451493942067 0.09843082262684567 26.109916262379326 -1.4168054789908915 -0.43775805627984643 EGEIIHLISK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGEIIHLISK 10 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 0 ;; 131.82 0.00024004 916630000.0 1556550.0 1547300.0 1410110.0 1302220.0 1320940.0 1877740.0 1758940.0 1585430.0 2244140.0 1846660.0 False True 1548169.7077489623 1598800.9451373979 1608641.2311041586 1467080.9184803746 1489153.879175213 1747936.2535245072 1673853.3523966817 1703742.8372504143 1691101.7669353636 1728804.5777948315 0.8955145813668095 0.924801429654207 0.9304933893430878 0.8486100380134941 0.8613777972954562 1.0110664189437069 0.968214322136836 0.985503427705875 0.9781913980656163 1.0 20.721343366829256 2.7358886705842793 24.99900624178431 0.9858337100298414 0.8936831416359211 0.778306958018721 0.025706515877420698 122.56445505380923 1146720.170430945 0.008805859658031056 0.008650038557950197 544.3630899521117 -2.7358886705842793 -0.09215056839392033 EGENNKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGENNKPR 8 1 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 0 ; 153.08 0.00040744 1154330000.0 1685530.0 1479700.0 1229550.0 1241570.0 1352030.0 986570.0 1515560.0 1826750.0 2389800.0 1774940.0 False True 1676455.293759988 1528950.9200024595 1402659.9525598136 1398752.6346989614 1524203.0063903488 918370.7380359771 1442246.5727985676 1963071.3610485462 1800865.811679367 1661661.8095974154 1.0089028249172776 0.9201336343963343 0.8441308240090369 0.8417793720840517 0.9172763059166835 0.5526820997700359 0.8679543361160793 1.1813904307785443 1.083773967288613 1.0 20.664195356207454 1.753756037418527 24.999346949271878 1.1001665534306437 0.843637670381328 0.45647223336019715 0.11863235778616546 4.384413275233522 7222.350939343571 0.05610428782227328 0.031112673230843265 56.722587981887095 -1.753756037418527 -0.25652888304931576 EGEQHVDDVSSALKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGEQHVDDVSSALKR 15 1 Q96P48-3;Q96P48;E7EU13;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;A0A0A0MSJ2;Q96P48-5 Q96P48-3 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 0 ; 68.944 0.033189 226095000.0 300780.0 315320.0 261732.0 272371.0 269686.0 335920.0 335230.0 302694.0 410960.0 313140.0 False True 299160.6338997993 325815.2355850352 298581.59058467334 306853.14067317225 304028.91354584374 312698.64107062394 319013.64419703867 325282.5633289877 309684.41458186985 293155.1371073581 1.020485729336689 1.1114089242983876 1.0185105181197218 1.0467261249486401 1.0370922254536632 1.0666660804791175 1.0882075864159624 1.1095918923292278 1.056384062164527 1.0 18.16130481247556 2.518377114268648 5.911432631236742 1.0772755818155555 1.0489998429487 0.0 0.036548516088838315 0.436669111915761 40.748507281229614 0.011642281634269086 0.010703668674883095 329.89604901517663 -2.518377114268648 -0.028275738866855527 EGERPSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGERPSLR 8 1 Q7L2H7;J3KNJ2;E9PN86;E7ESM3 Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M 0 ;;; 151.44 0.00043145 2654530000.0 1996410.0 2423170.0 2148150.0 2056230.0 2219190.0 2455550.0 2151040.0 2131730.0 2636400.0 2386390.0 False True 1985661.5503820032 2503823.748612804 2450590.847945482 2316548.5071699903 2501790.692330346 2285803.608242944 2046985.9774292216 2290810.5173056056 1986694.5459500703 2234088.547108732 0.8888016336468699 1.1207361283209443 1.0969085585783689 1.0369098888976331 1.1198261123392192 1.0231481698436435 0.9162510501557106 1.0253893115697141 0.8892640126198985 1.0 21.091254936856696 2.457847190430131 10.492343196660107 0.965792186312328 1.0593569073320876 0.2766016886517876 0.07173568993325051 0.48419264226441083 254.36222816864222 0.02355878250400445 0.019844707839641307 286.9770655358686 -2.457847190430131 0.09356472101975966 EGETQGVAFEHESPADFQNSQS(ph)PVQDQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGETQGVAFEHESPADFQNSQSPVQDQDK 29 0 P78332;E9PGM9;P78332-3;F8WCA5 P78332 RBM6 RNA-binding protein 6 1 EGETQGVAFEHESPADFQNS(0.044)QS(0.956)PVQDQDK 303.1 2.0682999999999996e-81 291290000.0 186850.0 182340.0 180540.0 185980.0 191720.0 250100.0 244710.0 228970.0 290440.0 234010.0 True False 185844.02036098647 188409.07667314215 205958.4627181887 209525.04893104098 216134.4055865307 232811.17567207356 232872.44241701905 246056.904086101 218864.9536966083 219075.28145395924 0.8483112249249506 0.860019785996432 0.9401264321163173 0.9564066175812476 0.9865759575981802 1.062699425179107 1.0629790858717185 1.123161419458508 0.9990399293066976 1.0 17.74106718680889 3.61775921656901 0.844207203586032 1.066554519530609 0.8368884595041358 0.786511039396272 0.03831238985929213 0.31025450619457917 0.42120426948455036 0.016801650654460827 0.04922550133851844 4147.240457774464 -3.61775921656901 -0.22966606002647316 EGEVLYIIEEDKGDGWTR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGEVLYIIEEDKGDGWTR 18 1 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 0 ;; 193.72 9.9812e-15 288711000.0 424540.0 341947.0 280980.0 265726.0 274212.0 411712.0 405769.0 324566.0 571428.0 381572.0 False True 422254.32381082844 353328.4991836735 320539.54167805816 299366.8843544991 309131.27281814 383251.3185058009 386140.40328189044 348786.76303275337 430607.22614290536 357219.74827977526 1.1820576153592661 0.9891068477741211 0.8973175285567104 0.8380468487426243 0.86538125147557 1.07287270748995 1.0809604036209792 0.9763927238411882 1.205440707621945 1.0 18.446452314016195 2.71402970309877 24.638896599470698 1.059412349133294 0.946677856074907 0.2202036802288132 0.10509138826905423 1068.835797945335 1073539.1443129955 0.03540509286697406 0.033395116411858224 517.6422343175515 -2.71402970309877 -0.11273449305838712 EGFDKIDISAVVAYTIAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGFDKIDISAVVAYTIAVK 19 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 98.035 0.00093099 7102800.0 25380.0 24100.0 23643.0 27588.0 21021.0 31208.0 30775.0 26809.0 48724.0 32301.0 False True 25243.356899983075 24902.153931242356 26971.728891360013 31080.637971338627 23697.899748771477 29050.664415730025 29286.29567808332 28809.62371334361 36716.62306815021 30239.5225257226 0.8347802740109522 0.8234969288969385 0.8919363349211976 1.0278151033932679 0.7836730797787355 0.9606852883017151 0.9684774504349914 0.9527142397449339 1.214193214754565 1.0 14.884147739504913 1.664687514471121 1.479130777099329 1.0925380940749645 0.8872080242311761 0.4559493504094625 0.08694665796028407 0.3427859191731178 1.4625746239519988 0.0692946416351762 0.025614822460110723 46.20484465787334 -1.664687514471121 -0.20533006984378843 EGGDGEEQDVGDAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGGDGEEQDVGDAGR 15 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 ; 328.32 1.988699999999999e-68 564850000.0 534460.0 559190.0 509900.0 502940.0 549710.0 618370.0 601880.0 543900.0 694680.0 619690.0 False True 531582.5267440884 577802.3011125063 581689.487869748 566612.1524323999 619712.3101135606 575623.5373864066 572764.7649951194 584488.5798682376 523485.4222350912 580140.8536566986 0.9162990735671499 0.9959689917897488 1.002669410718601 0.9766803162731506 1.0682100841673852 0.9922134146529781 0.9872856934396418 1.0074942596856173 0.9023419380577987 1.0 19.146043692265387 4.738929635790833 21.817931609160187 0.9952361760340471 0.9162989375284352 0.2613613061367295 0.03820987145184103 6.611031405666494 389841.2131825712 0.008737700546593419 0.05113685351522145 54818.81405136034 -4.738929635790833 -0.07893723850561196 EGGFLLLHTLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGGFLLLHTLLR 12 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 213.16 1.1857e-08 8186900000.0 5046800.0 5819700.0 5585200.0 5317400.0 4433300.0 5213600.0 5701000.0 4423700.0 6779100.0 5628400.0 False True 5019628.589552188 6013405.196417053 6371547.612571322 5990582.294794698 4997854.476772205 4853196.103494293 5425220.850065089 4753818.957093443 5108481.640286048 5269190.693284329 0.9526374887038702 1.1412388631296335 1.209208013802189 1.1369074765940421 0.9485051439003818 0.9210515211908675 1.0296117878177427 0.902191481350687 0.969500239723131 1.0 22.329149961462473 3.2364238324166528 24.999987718163872 0.9560694568447005 1.1193159022931956 0.5189061407168702 0.06953951208123714 41.58203901488523 486504.41524898354 0.019898935714799726 0.024908592994607483 1723.5497843204055 -3.2364238324166528 0.1632464454484951 EGGGVHAVPPDPEDEGLEETGSKDKDQPPS(ph)PSPPPQSEALSSTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGGGVHAVPPDPEDEGLEETGSKDKDQPPSPSPPPQSEALSSTSR 45 2 H3BU99;H3BPL8;H3BR21;H3BUX9;Q7L1V2 H3BU99 MON1B Vacuolar fusion protein MON1 homolog B 1 EGGGVHAVPPDPEDEGLEET(0.008)GS(0.008)KDKDQPPS(0.723)PS(0.213)PPPQS(0.009)EALS(0.009)S(0.009)T(0.009)S(0.009)R 50.968 0.010114 355050000.0 84162.0 69583.0 67939.0 67063.0 64122.0 83587.0 85781.0 91514.0 140060.0 90669.0 True False 83708.88114327734 71899.02809118824 77504.22066362595 75553.16892387567 72287.55661912977 77808.82743263335 81631.44531475751 98343.23937867605 105544.08970784649 84882.42679436361 0.9861744568881223 0.8470425600032739 0.9130773422794318 0.8900919987468192 0.8516198151857015 0.9166659150913913 0.9617001822122507 1.1585818536612136 1.2434150824120271 1.0 16.373178283141247 1.8518023993998833 3.1043412671223343 1.1521114556796994 0.8977632545193402 0.7041111018679339 0.06721429608674248 0.11867439798386559 2.0029085318255917 0.033727257316873475 0.0174968923793427 71.08899906605879 -1.8518023993998833 -0.25434820116035917 EGGLGPLNIPLLADVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGGLGPLNIPLLADVTR 17 0 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 66.215 0.096767 135750000.0 117150.0 135480.0 155410.0 152500.0 160040.0 157970.0 169240.0 134340.0 132840.0 184030.0 False True 116519.2774165885 139989.3699006105 177290.37715206438 171806.4843638227 180420.14536860207 147049.9057213814 161053.21464041644 144365.1329646977 100103.36196480332 172285.04784399015 0.6763168300135981 0.8125450911292984 1.0290526042202264 0.9972222576122752 1.0472188250020311 0.853526800854709 0.9348066861046206 0.8379434824513915 0.5810333700893779 1.0 17.394437973809534 -0.8657607663856695 7.267795320812997 1.0000000007064136 0.8762675599037925 0.06984703494870259 0.14276358929362543 1.0486410021567433e-09 2.885719793243048e-10 0.14074621174848023 0.033174200004055646 0.13621948487009003 0.8657607663856695 -0.12373244080262114 EGGSHFINTS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGGSHFINTSSPR 13 0 O60907;C9JP56;C9J5F9 O60907 TBL1X F-box-like/WD repeat-containing protein TBL1X 1 EGGSHFINT(0.001)S(0.499)S(0.499)PR 141.55 2.5702e-05 298690000.0 317320.0 318530.0 293450.0 300110.0 265040.0 330580.0 307120.0 233790.0 412150.0 317800.0 True False 315611.58437756647 329132.0784945488 334765.20928687556 338103.8952290281 298791.2729848431 307727.78270161594 292263.4322876666 251236.59696156537 310581.1550270527 297517.73191773123 1.0608160473098742 1.1062603777362738 1.125194142645064 1.1364159475460092 1.0042805551753267 1.034317453007164 0.9823395412562586 0.8444424315221541 1.0439080488585255 1.0 18.182616129369766 2.7168274473069496 1.3743526160411603 0.9450986854258461 1.1058840932076064 0.49922931887362676 0.05726472526974806 0.2982276312371533 1.146156434726807 0.025903405073182596 0.02413036422006305 520.9876725838892 -2.7168274473069496 0.16078540778176031 EGGSHFINTSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGGSHFINTSSPR 13 0 O60907;C9JP56;C9J5F9 O60907 TBL1X F-box-like/WD repeat-containing protein TBL1X 1 EGGSHFINT(0.053)S(0.444)S(0.503)PR 114.01 0.00050016 287190000.0 166330.0 178610.0 163450.0 184260.0 180500.0 186380.0 176780.0 158960.0 210230.0 209560.0 True False 165434.4977610002 184554.9258779749 186462.33926713158 207587.29710739647 203485.6050926813 173495.9892913278 168228.47603481935 170822.40238252465 158421.63343767377 196185.70138665734 0.8432546133163376 0.9407154781083681 0.9504379674420704 1.0581163440564305 1.0372091526264535 0.8843457401076801 0.8574961113157895 0.8707179023503614 0.807508561112946 1.0 17.581860371802943 2.588732316745559 7.721236063565792 0.8721839832990445 0.9686476396296614 0.2434857963617928 0.0709136313884173 0.3602475791363756 22.43687255773178 0.02343989125789446 0.02205993664249683 387.91119799845075 -2.588732316745559 0.09646365633061693 EGGVIVDYHGCDFFPER ddPTM_BT-474_Trastuzumab_2h_R1 2 EGGVIVDYHGCDFFPER 17 0 A0A087WVD7;D6RDH4;Q9Y3D8-2;Q9Y3D8 A0A087WVD7 TAF9;AK6 Adenylate kinase isoenzyme 6 0 ; 199.49 1.3242e-11 310830000.0 333110.0 418580.0 367140.0 381160.0 387440.0 386820.0 403560.0 366150.0 468940.0 397470.0 False True 331316.5727720001 432512.1822630462 418830.1207619127 429414.816918785 436778.1874632048 360080.04387633555 384038.26105109014 393473.9722720271 353376.0204740651 372103.12430881226 0.8903891183053788 1.162344936142218 1.125575394025236 1.1540209927461107 1.1738095138935678 0.9676888484749765 1.0320748092734982 1.0574325948026144 0.9496722746697355 1.0 18.505342978326745 2.731001230728345 24.990163808818078 1.011794404875308 1.1089089554629776 0.26867860089975015 0.08097467778828758 821.2626244732969 2714959.83555776 0.025675476328927287 0.024633626248126584 538.271307897901 -2.731001230728345 0.0971145505876696 EGHDAFELK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGHDAFELK 9 0 H3BRF9;Q96K21-2;Q96K21;Q96K21-4;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 0 ; 96.665 0.0072142 350250000.0 548030.0 528450.0 468400.0 478670.0 469690.0 605380.0 564900.0 461050.0 703790.0 582290.0 False True 545079.4673718573 546039.1387952293 534346.6485942148 539269.5729208596 529502.2374292602 563531.5055112351 537573.6288724376 495455.89216446184 530350.3848028376 545127.7536764501 0.999911422039573 1.001671874368224 0.9802227917960049 0.9892535635617856 0.971336047115913 1.0337604381920869 0.9861424688927211 0.9088803291026895 0.9728919161170001 1.0 19.05623484743977 1.9757600990737028 24.436353663455385 0.9497275940950859 0.9954523163232126 0.23288822800712117 0.026665400406433046 567.7646001398422 572365.0986084884 0.010498860998222719 0.006809820442715038 94.57146115865389 -1.9757600990737028 0.045724722228126735 EGHGS(ph)SSFDRELER ddPTM_BT-474_Trastuzumab_2h_R1 1 EGHGSSSFDRELER 14 1 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 EGHGS(0.42)S(0.326)S(0.254)FDRELER 111.22 0.00040222 426900000.0 98023.0 141170.0 124370.0 146590.0 140120.0 147910.0 143630.0 120880.0 129310.0 130760.0 True False 97495.25505937904 145868.75811093274 141880.2149565809 165148.27896978884 157963.45144369252 137685.32984268852 136682.0681801173 129900.67941620247 97443.28316522668 122414.78485073177 0.7964336593677086 1.1915942856804422 1.1590120844437588 1.3490876871708328 1.2903952054182632 1.1247442864893902 1.1165486942347898 1.0611518827125233 0.7960091036719588 1.0 16.90141828690115 1.5014933037483191 2.953645134067495 0.8997427262839388 1.1615688020570265 0.303530383089607 0.14593901323995512 0.2735164874181516 4.901767915675722 0.10857988932294663 0.038899213600430894 31.731697373406796 -1.5014933037483191 0.2618260757730877 EGHGSSS(ph)FDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGHGSSSFDR 10 0 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 EGHGSS(0.027)S(0.973)FDR;EGHGS(0.001)S(0.272)S(0.727)FDR 172.57 2.3673e-06 696700000.0 145732.0 221940.0 213406.0 231380.0 234780.0 178925.0 199400.0 158961.0 189713.0 193404.0 True False 144947.39510434732 229327.13873443706 243451.70984179532 260672.68427607443 264677.84134991496 166556.3358941454 189754.26021802804 170823.4770076023 142960.77317395917 181060.7911385051 0.8005454642770653 1.2665753711360397 1.3445854749168935 1.4396970356584218 1.4618175458398708 0.9198917935067217 1.048014089769843 0.943459243348431 0.7895733376344259 1.0 17.466114637763276 2.7199039837499024 24.219805246848434 0.9463046622245527 1.2772511423296466 0.4388026010490005 0.18189230267402925 531.6838838094122 690224.0031291953 0.060851834201189885 0.057475301344808244 524.691445709846 -2.7199039837499024 0.330946480105094 EGHGSSS(ph)FDRELER ddPTM_BT-474_Trastuzumab_2h_R1 3 EGHGSSSFDRELER 14 1 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 EGHGS(0.027)S(0.049)S(0.924)FDRELER;EGHGS(0.038)S(0.166)S(0.796)FDRELER;EGHGS(0.004)S(0.273)S(0.723)FDRELER 123.14 6.3358e-05 1300280000.0 312699.0 534650.0 483140.0 610920.0 597230.0 567910.0 546293.0 494939.0 536544.0 562310.0 True False 311015.4633281253 552445.5020472504 551161.912471838 688262.4093609606 673283.7004404545 528651.7184163431 519866.72054807964 531873.8614293182 404319.9205212538 526422.894382188 0.59080915105931 1.0494328950027956 1.046994571006802 1.3074325161497926 1.2789787595211317 1.0042339040682697 0.9875458041356604 1.0103547302089273 0.7680515510172962 1.0 19.005862708368248 -1.130962917642607 6.638001191380071 0.9999999609256341 1.0229383284440154 0.0 0.2003092705080697 1.1850566606982533e-07 1.4923518937266415e-08 0.19552792928048188 0.046086296613460455 0.073966842916039 1.130962917642607 0.022938367518381297 EGHGSSSFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGHGSSSFDR 10 0 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 0 ; 113.93 0.0014234000000000002 197870000.0 94421.0 161441.0 145424.0 191855.0 153838.0 146003.0 132477.0 135191.0 127839.0 134747.0 False True 93912.64782715924 166814.46609185485 165898.4351519323 216143.82332866386 173428.3574307363 135910.15626409344 126068.58139871473 145279.6389059881 96334.79140483649 126147.3310972892 0.7444679725703475 1.322378084742845 1.3151164888616285 1.7134236725307033 1.3748079798611224 1.0773922450985094 0.9993757323449535 1.1516663701267162 0.7636688827807205 1.0 16.944750157933452 2.6259583925354004 4.473976692827884 1.012387069470651 1.319228402039777 0.2758501181675217 0.23902876305591284 0.32689070555638866 10.65302305439534 0.08183023313056258 0.07678627578809556 422.6281225537669 -2.6259583925354004 0.30684133256912616 EGHILK ddPTM_BT-474_Trastuzumab_2h_R1 5 EGHILK 6 0 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 0 ;;;; 109.88 0.02918 5437500000.0 14598300.0 15544700.0 13950800.0 13999400.0 14060200.0 15229300.0 15590800.0 14439500.0 20557900.0 16119600.0 False True 14519704.374823617 16062095.942530418 15914951.377472619 15771722.604609188 15850683.12866547 14176534.336916063 14836613.441360243 15517048.812295329 15491681.006746681 15090833.327316105 0.9621539155522525 1.064361098830521 1.0546105064101905 1.0451193954982325 1.0503517456503844 0.9394136181502277 0.9831540193677909 1.0282433365828596 1.026562328980534 1.0 23.847169138995387 EGHILQDFEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGHILQDFEGR 11 0 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 0 ; 114.72 0.0012195 115663000.0 157033.0 174580.0 143522.0 162130.0 146686.0 147587.0 155324.0 131616.0 199646.0 157519.0 False True 156187.5517760065 180390.78976416137 163728.65008441277 182655.64137643654 165365.5926239615 137384.65807242852 147810.3847246991 141437.85425250602 150445.91841933999 147466.00256119936 1.059142779103866 1.2232703581240565 1.1102806561564202 1.2386288242988972 1.121381130239383 0.9316361445100743 1.0023353326022166 0.9591217758398813 1.0202074770210439 1.0 17.170022862200877 2.8605448674489278 4.987940098944334 0.9806456009704458 1.1611721372465396 0.7141933657661492 0.053350826210315866 0.1089602901152879 3.9956099799342697 0.015139598951946321 0.016140511686893247 725.3454104665683 -2.8605448674489278 0.18052653627609372 EGHLSPDIVAEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGHLSPDIVAEQK 13 0 P15559-2;P15559;B4DLR8;P15559-3;H3BNV2;H3BRK3 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 ;;; 201.38 1.023e-07 6174300000.0 6581300.0 9319300.0 9841200.0 9914300.0 9520100.0 12133800.0 12309700.0 10483100.0 12203900.0 12297800.0 False True 6545867.012051164 9629487.266864182 11226755.418756163 11169449.36346392 10732428.304946436 11295018.965892868 11714232.783379423 11265402.154103203 9196412.368881823 11512943.875323718 0.5685658753258804 0.8364052992131366 0.9751420262561205 0.9701644934970952 0.932205387359683 0.9810713131419029 1.0174837044491407 0.9784988336691987 0.7987889516766398 1.0 23.45675344392736 4.689993285047432 2.213770434176926 0.9608386262410934 0.4902863039037768 0.8054135479370692 0.0578421881618246 0.2200177561632589 1.3489188120474143 0.01436424081646322 0.19504481953897532 48977.12465894855 -4.689993285047432 -0.4705523223373166 EGHQVALLSGEMMVEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGHQVALLSGEMMVEQR 17 0 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;I3L352;Q9UMR2-3;Q9NUU7-2 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 103.41 0.0019224 0.0 179550.0 162160.0 164190.0 168380.0 157850.0 195010.0 196000.0 167490.0 277370.0 197430.0 False True 178583.32274988052 167557.3975722098 187306.5248349364 189696.89073560975 177951.26184974928 181529.41770416248 186518.73120728938 179988.95429698672 209015.8800675812 184829.84837167323 0.9662039130756002 0.9065494510132889 1.0133997646217987 1.026332556168901 0.9627842224482496 0.982143410836577 1.0091375005200458 0.9738089160526064 1.1308556594564338 1.0 17.495838232384138 5.5509184013166495 0.2788404813480157 1.029227948677234 0.8226642335813518 0.23347400999094436 0.04816271912858542 20.88482729012008 0.9434287660826299 0.0566104530079161 1.5982466260360386 355564.50601996813 -5.5509184013166495 -0.20656371509588223 EGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGHSLEMENENLVENGADSDEDDNSFLK 28 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK 289.21 2.6191999999999984e-71 3597610000.0 1380020.0 1119890.0 1112450.0 1023010.0 1032400.0 1350650.0 1242990.0 1045870.0 1566750.0 1249610.0 True False 1372590.1256546364 1157164.8616621986 1269073.29041126 1152522.961108421 1163870.0204857828 1257282.7445881092 1182861.8250170846 1123918.1302202505 1180645.4558744011 1169858.8199550535 1.173295531256816 0.9891491536616849 1.0848089263113119 0.9851812384956857 0.9948807502519826 1.0747303205667285 1.0111150207531288 0.9607297146021705 1.0092204595420857 1.0 20.15790300337184 EGHWSK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGHWSK 6 0 Q9BWF3;Q9BQ04 Q9BWF3 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B 0 ; 93.593 0.045443 1123640000.0 1008690.0 1332500.0 1371310.0 1412650.0 1355080.0 1335140.0 1530600.0 1352650.0 1640360.0 1514000.0 False True 1003259.3251159955 1376851.4569867419 1564378.5283598066 1591491.3451577332 1527641.4058115792 1242844.9143814982 1456559.0305401897 1453591.6116175265 1236115.2576978686 1417375.223799388 0.7078290266896852 0.9714092880048948 1.1037151645464527 1.1228440559950053 1.0777960416978463 0.8768637221200698 1.0276453306667563 1.0255517291469634 0.872115750961388 1.0 20.434790304894342 4.7200823664493665 3.886869746781127 1.0177261736601038 0.68341968408564 0.5641973910156985 0.0798828428147264 0.16559132451619984 5.021646107028251 0.019865697301214798 0.15251065459475122 52490.700244577616 -4.7200823664493665 -0.33430648957446374 EGIDPTPYYWYTDQR ddPTM_BT-474_Trastuzumab_2h_R1 6 EGIDPTPYYWYTDQR 15 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;;;; 176.78 1.8154e-06 6028300000.0 1101588.0 1288191.0 1341615.0 1292376.0 1265838.0 1307278.0 1314081.0 1283667.0 1478191.0 1222923.0 False True 1095657.1726059318 1331067.658707096 1530502.7304733724 1455990.6690897045 1427034.9660903567 1216908.9488614053 1250513.88175309 1379460.7498689506 1113910.634794599 1144875.0071429433 0.9570102987400908 1.1626314229959478 1.336829541150322 1.2717464002670091 1.246454815754559 1.0629186079432584 1.0922710985488018 1.2049007457254397 0.9729539275858449 1.0 20.126758668591084 2.734710693537443 24.772823259974718 1.0916550895160373 1.2052902674595987 0.23359957037896584 0.11091330308644914 527.2070414148623 3392364.642829029 0.036985294666146716 0.0360654188208718 542.888564300745 -2.734710693537443 0.11363517794356137 EGIIHTLIVDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGIIHTLIVDNR 12 0 Q9NVQ4;Q9NVQ4-3;Q9NVQ4-2 Q9NVQ4 FAIM Fas apoptotic inhibitory molecule 1 0 102.4 0.0023581999999999995 290520000.0 65306.0 129150.0 108730.0 140510.0 129030.0 91676.0 102960.0 71794.0 65836.0 88716.0 False True 64954.39975217872 133448.6796771762 124038.2389018981 158298.55159318526 145461.2056792722 85338.65390209119 97979.43145460465 77151.63284254502 49611.59995720256 83054.06892641114 0.7820736610716884 1.6067687158761177 1.493463721949618 1.9059698536075746 1.7514037248211887 1.0275072010945576 1.1797065781499267 0.9289326078762512 0.5973409924221799 1.0 16.341763228967178 2.6313786875536134 5.415341372462954 0.9515241361161223 1.5333021214537188 0.4556717895214868 0.30669744825892814 0.21687928187507888 9.161189999568698 0.10321653135417427 0.09703486885142 427.9358666092887 -2.6313786875536134 0.5817779853375965 EGILPER ddPTM_BT-474_Trastuzumab_2h_R1 2 EGILPER 7 0 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7;O43768-8 A6NMQ3 ENSA Alpha-endosulfine 0 ; 97.093 0.028499 462590000.0 419580.0 501380.0 453540.0 459470.0 431600.0 508980.0 469740.0 416730.0 484830.0 463930.0 False True 417321.02789972036 518068.1302093903 517394.48975965055 517638.85488947923 486561.7017063777 473795.4106100443 447016.88161893934 447828.5087120629 365350.14288915694 434321.5902095445 0.9608572019143188 1.192821498833252 1.191270481188896 1.191833117574784 1.1202797942225924 1.0908861573781194 1.029230164227548 1.0310988880290335 0.84119728589336 1.0 18.728404145658367 1.932148324956232 1.214451053961573 0.9361686962355612 1.1402055208018669 0.50157207044722 0.07723534703394941 0.3685042797692364 1.0037063276684728 0.05821506107872403 0.025767325474956915 85.53587944061074 -1.932148324956232 0.20403682456630567 EGILPERAEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGILPERAEEAK 12 1 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7;O43768-8 A6NMQ3 ENSA Alpha-endosulfine 0 129.71 0.00020927 163680000.0 90409.0 103040.0 101960.0 127140.0 96778.0 119690.0 143570.0 112760.0 191800.0 145760.0 False True 89922.2479893841 106469.62411100467 116315.0817477929 143235.91096404224 109102.10465185311 111416.11201995413 136624.9706093393 121174.72378367813 144533.45998832618 136457.47200858564 0.6589763584637297 0.7802403382081254 0.852390712180822 1.049674370012 0.7995319204285758 0.8164896387128149 1.001227478409853 0.8880035808962814 1.0591831862401233 1.0 17.058091868935936 5.523486360134583 0.6868574798903061 0.9404473700278426 1.9186467848146368e-14 0.5307076944146445 0.08638492161481692 6.517475863637599 1.0585983295930348 0.03337169294614737 6.108257183461659 333800.0213605167 -5.523486360134583 -0.9404473700278234 EGIPALDNFLDKL ddPTM_BT-474_Trastuzumab_2h_R1 2 EGIPALDNFLDKL 13 1 P13639 P13639 EEF2 Elongation factor 2 0 ; 150.68 0.00086335 419050000.0 623550.0 589320.0 510370.0 499140.0 496930.0 610960.0 634260.0 551220.0 766320.0 576570.0 False True 620192.8760829186 608935.1599485364 582225.6597844355 562331.0728220224 560211.0899651304 568725.7732451425 603578.4206915065 592354.8354384454 577470.7041619096 539772.8089735878 1.1489887333566406 1.1281323360961164 1.0786494801240072 1.0417921456461108 1.0378645990530855 1.0536391677947072 1.1182082732904777 1.0974151079689354 1.0698403005145938 1.0 19.04199277738643 -4.132433620339477 0.010530364507111064 3.522559640886806e-07 1.9983584476770573 0.40036662840537074 0.03393925589759095 13862.636200820933 12.774047142937706 1390.026747663018 1055.0299232874763 7.371678390109884e-05 4.132433620339477 1.998358095421093 EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGIQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCR 37 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 EGIQWEAKEDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR 210.58 4.1448e-31 59427000.0 46626.0 50474.0 31159.0 35183.0 34338.0 49462.0 36734.0 27963.0 76536.0 50787.0 True False 46374.9707966356 52153.99657782268 35545.916361116884 39637.16419260572 38710.740762728456 46042.80836102401 34957.03608249266 30049.741053236867 57674.72832985679 47545.73017906175 0.9753761404438009 1.0969228231726753 0.7476153216544908 0.8336640123798369 0.8141791201216201 0.9683899729296911 0.7352297661817608 0.632017658369462 1.2130369669925831 1.0 15.537028165933187 4.24373376622474 24.999531558473638 0.8377173428495285 1.0361495150291697 0.1301667898682608 0.1591124114358135 194.758179285038 941149.9619752385 0.038228399215459875 0.0982957160729685 17528.056571172532 -4.24373376622474 0.19843217217964126 EGIREETVSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGIREETVSLR 11 1 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 ;;; 232.42 3.169e-13 6683810000.0 2351740.0 2691250.0 2516430.0 2694510.0 2772890.0 2765480.0 2725810.0 2432190.0 3080110.0 2852410.0 False True 2339078.49314288 2780826.6293550218 2870721.4707983383 3035634.6897256635 3126001.1052933205 2574308.8768396904 2593952.1566946 2613692.3682105686 2321058.1618594555 2670366.7517289333 0.8759390415673951 1.0413650587712608 1.0750289146386671 1.1367856822514124 1.170626133383883 0.9640282089240925 0.9713842321528088 0.9787765543883922 0.8691907807632351 1.0 21.34860646650461 2.526922581047744 24.350887529927718 0.9578812423094856 1.0643534946421882 0.29704335280490546 0.07933578446767114 361.8900079191124 176949.31778267145 0.026736033032229857 0.025206509213735896 336.4515869160076 -2.526922581047744 0.10647225233270263 EGIVALR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGIVALR 7 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ;; 98.133 0.026723 573840000.0 625410.0 754790.0 664110.0 688640.0 664630.0 715130.0 733990.0 670040.0 783390.0 719580.0 False True 622042.8620495833 779912.7288698104 757610.9154523993 775821.7533921493 749266.6909293551 665694.7463349457 698484.0995859088 720041.7871941793 590334.0313881908 673655.7883365677 0.9233838301687719 1.1577318006806099 1.1246261496886099 1.151659002749544 1.112239668836648 0.9881823297009295 1.0368560794388018 1.0688571220803293 0.8763140488199173 1.0 19.36165209357707 2.742158494939162 24.633218913980404 1.0076697579636988 1.1023854651105458 0.28139525442621105 0.07772585235978464 360.4189290424672 2467646.1799719646 0.023859289027319007 0.024409813903302453 552.2789556538396 -2.742158494939162 0.09471570714684696 EGKPEIEGKPES(ph)EGEPGSETR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGKPEIEGKPESEGEPGSETR 21 2 Q96EI5;Q96EI5-2;D6RD44 Q96EI5 TCEAL4 Transcription elongation factor A protein-like 4 1 EGKPEIEGKPES(0.999)EGEPGSETR;EGKPEIEGKPES(1)EGEPGSETR;EGKPEIEGKPES(1)EGEPGSETR 117.03 6.0439e-05 1125180000.0 530620.0 358429.0 326982.0 321528.0 327266.0 469620.0 468220.0 429240.0 753950.0 483470.0 True False 527763.2008774239 370359.0925900941 373018.2234215064 362233.4118329917 368941.3852424451 437156.2747665705 445570.4098259031 461272.068436555 568149.1249124022 452614.5306805085 1.1660323854029364 0.8182660243657159 0.8241410695778401 0.800313262785381 0.8151337622496114 0.965846752885515 0.9844368212306075 1.0191278387439966 1.2552604620496537 1.0 18.787923375886965 1.910210846764763 1.449621098215793 1.1140756195938217 0.8787369885252599 0.3540565800508684 0.11925004276409205 0.42162599767522985 1.6508286895803352 0.08462339074987861 0.0374714765915331 81.32252351877672 -1.910210846764763 -0.2353386310685618 EGKPSWGLPIDAVQWDICNLPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGKPSWGLPIDAVQWDICNLPLR 23 1 Q9BV44 Q9BV44 THUMPD3 THUMP domain-containing protein 3 0 ; 168.57 8.6663e-12 219030000.0 280390.0 321650.0 291990.0 282140.0 283960.0 287680.0 325650.0 273350.0 362650.0 338370.0 False True 278880.41139425756 332355.92580846883 333099.6539774226 317858.89507153386 320120.6228372171 267793.3587258785 309897.0653961927 293748.7650431746 273279.7667610348 316774.9369068684 0.8803739781858063 1.0491863057530375 1.0515341182921731 1.0034218558300403 1.0105617128773428 0.8453741995523136 0.9782878292776749 0.9273106259967041 0.8626937769428988 1.0 18.27309866897507 2.788846793712698 24.9928955458373 0.9237059208018275 1.0049653849217932 0.2725021064454154 0.061929126573890055 450.5044673138418 223905.83079553416 0.018179621138272404 0.019282379936224062 614.9598947226838 -2.788846793712698 0.08125946411996576 EGLDWDLIYVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGLDWDLIYVGR 12 0 Q8NBJ5;M0QX72 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 0 ; 109.42 0.0037221 117168000.0 165330.0 241670.0 203857.0 214488.0 220133.0 214754.0 236773.0 186940.0 225965.0 200817.0 False True 164439.8816498898 249713.8398574003 232558.2936431913 241642.15880804977 248165.63271948587 199908.56145653946 225319.38542930366 200890.41206208555 170278.95352587153 188000.6871319163 0.8746770246350518 1.3282602508903658 1.2370076790198636 1.2853259341466894 1.3200251366387457 1.0633395255426257 1.1985029888279164 1.0685621160582504 0.905735804073898 1.0 17.52037840931843 1.5437510508422758 2.4850791238936307 0.952137115656115 1.200197761595708 0.33750851805219007 0.13029435620571145 0.2738186440336647 3.6233718022603587 0.09543469937086767 0.0341575156917888 34.97446266262947 -1.5437510508422758 0.24806064593959298 EGLEDKYNLQLNPEWR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGLEDKYNLQLNPEWR 16 1 M0R2P8;M0QYF4;M0R3A4;M0QXD5;M0QYA2;Q9NWS0 M0R2P8 PIH1D1 PIH1 domain-containing protein 1 0 ; 120.9 9.2726e-05 302000000.0 193117.0 221550.0 192887.0 198941.0 205281.0 226680.0 209150.0 234730.0 310400.0 243000.0 False True 192077.27952931589 228924.15782019665 220043.81299614077 224126.91020211997 231422.3185541865 211010.14514732378 199032.61546941096 252246.7445347885 233906.0791469058 227491.53195723312 0.8443271618805799 1.0062974909467526 0.9672615552015691 0.985209903304244 1.0172788259990808 0.9275516470080841 0.8749012051438809 1.1088181716680743 1.028196861370992 1.0 17.79545331851439 1.7292844485724634 19.604813037481254 1.0512549333177112 0.9527726466365007 0.38055373004923254 0.05763767654631843 0.23613452236828314 479.7579878897024 0.02629517991650694 0.014565952622651888 53.61477016141988 -1.7292844485724634 -0.0984822866812105 EGLEIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGLEIVK 7 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 77.058 0.090912 108120000.0 188570.0 224740.0 212920.0 214810.0 213330.0 246790.0 230700.0 172610.0 262900.0 235300.0 False True 187554.76007209643 232220.3350418011 242897.28526618343 242004.92397503424 240496.31099402593 229729.9881811716 219540.15964041636 185491.03469581992 198111.81767951514 220282.95254953482 0.8514265761437947 1.054191131697229 1.1026603849953542 1.0986094074647688 1.091760883947412 1.0428859134231572 0.9966280054787652 0.8420580555552011 0.8993515630083355 1.0 17.748998325245545 1.9527847422113647 4.785025517029906 0.8993890633680084 1.0471503793882162 0.3418783601990857 0.07720854255277643 0.2029405581709452 10.17902242244485 0.0349386949874048 0.021235814621930114 89.69840946961057 -1.9527847422113647 0.1477613160202078 EGLELLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGLELLK 7 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ; 100.45 0.022762 513610000.0 882420.0 763070.0 677800.0 605130.0 640850.0 824590.0 785620.0 717320.0 1028730.0 803010.0 False True 877669.1487660779 788468.3236644439 773228.3484567861 681739.395954623 722458.4488844582 767588.034176071 747616.5592401557 770850.0608771545 775213.2757757612 751761.2143085507 1.1674839457810202 1.0488281500258767 1.0285557883801977 0.906856303542699 0.9610211795097139 1.0210529880582857 0.9944867399521176 1.0253921673601651 1.0311961577969688 1.0 19.519914958628387 4.705937358535082 1.843488023673849 0.9945779076224702 1.2143775514039963 0.6845363055610523 0.03557555484053608 0.47940532206824416 1.7668294285336599 0.010028784793392606 0.17820286757982576 50808.61522986293 -4.705937358535082 0.21979964378152606 EGLELPEDEEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGLELPEDEEEK 12 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;Q58FG0 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ;;; 247.31 2.9466e-16 3944940000.0 6509300.0 4759210.0 4141550.0 3407320.0 3794990.0 5477790.0 5267680.0 5396910.0 7811400.0 5301420.0 False True 6474254.652051221 4917617.427846806 4724644.241002071 3838686.3626396116 4278259.481831991 5099123.270630659 5012862.193908229 5799654.829153683 5886385.13739735 4963078.836825995 1.3044835403403865 0.9908400792181931 0.951958329967531 0.7734485968984811 0.862017232143755 1.0274112981633932 1.010030740739567 1.1685598838608613 1.1860349857270918 1.0 22.242803940863208 1.9307040095354004 3.026542313913479 1.1338406223356796 0.9695420047734948 0.1487251775395254 0.1374059626651456 0.42895474422053975 7.123993925804454 0.07356429137024109 0.040294069639074066 85.25188874971258 -1.9307040095354004 -0.16429861756218478 EGLELPEDEEEKK ddPTM_BT-474_Trastuzumab_2h_R1 7 EGLELPEDEEEKK 13 1 P08238;Q58FF7;Q58FF6;P07900;P07900-2;Q58FG0 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ;;;;;; 224.05 2.3666e-11 19899700000.0 8117440.0 5141120.0 4156040.0 3762280.0 3797920.0 6923090.0 6453110.0 6553780.0 12168920.0 6337690.0 False True 8073736.604972364 5312239.071327334 4741174.307052733 4238584.262244745 4281562.599964518 6444513.083500908 6140948.416025872 7042856.343020514 9170052.721173855 5933213.198230606 1.3607696766029076 0.8953393201699785 0.7990905009896896 0.7143825985401586 0.7216262852717579 1.0861758828121635 1.035012262471407 1.187022294280749 1.5455457969904967 1.0 22.50038219343403 1.9844153144418306 1.6261601618462682 1.2745795386867265 0.8941695275857815 0.29948767300797663 0.2166258707288414 0.43880749942843 2.1627042181142735 0.14215315885609092 0.06855257741099793 96.47511711292286 -1.9844153144418306 -0.38041001110094497 EGLELPEDEEEKKK ddPTM_BT-474_Trastuzumab_2h_R1 9 EGLELPEDEEEKKK 14 2 P08238;Q58FF7;P07900;P07900-2;Q58FG0 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ;;;;;;;; 189.86 3.7673e-07 35796955600.0 20114597.0 11464922.0 9069646.0 8636653.0 8159564.0 15837722.0 16693913.0 15259297.0 33217747.0 14261096.0 False True 20006302.244693793 11846524.998078298 10346573.32202377 9730052.384264024 9198636.109875115 14742897.55612741 15886364.651249364 16398023.22728015 25031678.34685529 13350940.643741457 1.4984938348948604 0.887317629086428 0.7749696143600152 0.7287915244252994 0.6889878664981688 1.1042590892678759 1.189906020494252 1.2282298052884444 1.8748999800691522 1.0 23.670438055132145 2.049287518782334 1.62926950435834 1.4064025279042367 0.9036565100082009 0.2986920218445255 0.2962410534815778 0.4447845033994274 2.2222765311850208 0.1831458551817148 0.09347789491785542 112.01792375377636 -2.049287518782334 -0.5027460178960358 EGLELPEDEEEKKKQEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGLELPEDEEEKKKQEEK 18 3 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ;; 125.18 1.3261e-05 10045440000.0 1332120.0 706311.0 522590.0 532570.0 492316.0 985910.0 960730.0 898119.0 2498720.0 835160.0 False True 1324948.0139324453 729820.1346609847 596166.1295662919 599993.3073943683 555009.5244144504 917756.3622825043 914255.8195549948 965141.2003358738 1882943.9371325888 781859.3737835507 1.6946116633747015 0.9334416893018253 0.7624978986711415 0.767392868222451 0.7098585027236609 1.1738125717433365 1.1693353692630877 1.2344178923959064 2.408289777253296 1.0 19.576549620346434 1.4644296481533865 5.035406029968638 1.7458284377083548 1.012641591321981 0.2816461426720672 0.4182439500138662 0.19098505361542847 10.175684845906025 0.25558178829858735 0.10211154309945343 29.135981195376754 -1.4644296481533865 -0.7331868463863738 EGLEQALPSGKPS(ph)SPVELDLFGDPSPSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGLEQALPSGKPSSPVELDLFGDPSPSSK 29 1 Q9H201 Q9H201 EPN3 Epsin-3 1 EGLEQALPS(0.116)GKPS(0.442)S(0.442)PVELDLFGDPSPSSK;EGLEQALPS(0.07)GKPS(0.465)S(0.465)PVELDLFGDPSPSSK;EGLEQALPS(0.031)GKPS(0.485)S(0.485)PVELDLFGDPSPSSK;EGLEQALPS(0.013)GKPS(0.493)S(0.493)PVELDLFGDPSPSSK 218.22 1.4306999999999996e-34 1822451000.0 1347606.0 1110043.0 1034487.0 943737.0 936142.0 1513562.0 1404504.0 1311214.0 1955286.0 1475108.0 True False 1340350.6390291022 1146990.1102198374 1180133.777677804 1063214.0074364655 1055354.1347516484 1408933.0214817089 1336562.7757936872 1409063.446889782 1473431.9647900644 1380965.3445365024 0.9705896272719053 0.8305712484079788 0.8545716098863407 0.7699063641552245 0.7642147856403017 1.020252265602359 0.9678467175744239 1.0203467107009194 1.0669579585174869 1.0 20.397245684798005 2.725654026244355 24.87090815741794 1.01271377942998 0.8347005634256727 0.7018632637812358 0.057685787570021886 413.96090243356576 797698.5146406548 0.019191985295127122 0.018198787104429 531.6845325292031 -2.725654026244355 -0.17801321600430742 EGLEQALPSGKPSS(ph)PVELDLFGDPSPSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGLEQALPSGKPSSPVELDLFGDPSPSSK 29 1 Q9H201 Q9H201 EPN3 Epsin-3 1 EGLEQALPS(0.002)GKPS(0.108)S(0.889)PVELDLFGDPSPSSK 224.41 8.2404e-35 227990000.0 263910.0 188850.0 189140.0 165750.0 168220.0 295610.0 268440.0 250600.0 360200.0 276390.0 True False 262489.13788315747 195135.7580877641 215769.2679656489 186733.93300526938 189641.8198819436 275175.17649109056 255454.53165961604 269301.04452101537 271433.536432717 258750.5535706162 1.0144486041129221 0.7541462439210169 0.8338891066633518 0.7216754918141939 0.7329136779225789 1.0634766677551932 0.9872617783207925 1.0407747570190988 1.0490162540218082 1.0 17.981202423552073 2.7328947229042955 24.99744967480892 1.028023225319638 0.804496121375332 0.6475225176938373 0.07985578932833023 282.33316157451395 1245626.7141145507 0.02509462525219451 0.02426401324905386 540.6232548628191 -2.7328947229042955 -0.22352710394430597 EGLGQGQS(ph)LEQLEALVQTK ddPTM_BT-474_Trastuzumab_2h_R1 6 EGLGQGQSLEQLEALVQTK 19 0 Q9NSC5-2;Q9NSC5;M0QYF9;Q9NSC5-5 Q9NSC5-2 HOMER3 Homer protein homolog 3 1 EGLGQGQS(1)LEQLEALVQTK;EGLGQGQS(1)LEQLEALVQTK;EGLGQGQS(1)LEQLEALVQTK;EGLGQGQS(1)LEQLEALVQTK;EGLGQGQS(1)LEQLEALVQTK;EGLGQGQS(1)LEQLEALVQTK 407.94 1.297899999999999e-147 1650069000.0 992450.0 847592.0 850914.0 812837.0 822874.0 980758.0 1000141.0 906769.0 1184910.0 973342.0 True False 987106.7594715611 875803.5873398158 970715.2949229254 915742.0808579457 927662.1263436847 912960.5079160003 951760.3589203552 974436.7072596836 892904.8074805416 911222.4802399882 1.0832774441776143 0.961130356561392 1.065289011161433 1.004959930989375 1.0180413087475266 1.001907358206916 1.0444873557878978 1.0693729889138015 0.9798976944087 1.0 19.79744381381239 2.2136704669542198 24.986475745808104 1.0340678688313185 1.020601657484795 0.0 0.03938628109177611 1079.0491143662935 1083222.1021724648 0.013915793197546149 0.01028038532929226 163.5575012333977 -2.2136704669542198 -0.013466211346523593 EGLGVNEVHYVDNQDCIDLIEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGLGVNEVHYVDNQDCIDLIEAK 23 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ; 92.416 0.0048913 412140000.0 86143.0 126861.0 125796.0 131311.0 114447.0 116231.0 117053.0 105213.0 76423.0 123795.0 False True 85679.21565938706 131083.49169590604 143506.9833615668 147934.9591363799 129021.14706948513 108196.22454834382 111390.69920411656 113064.52832078854 57589.575665734395 115894.29711376815 0.7392875904435546 1.1310607593333721 1.2382575064991552 1.2764645269055725 1.1132657109333943 0.9335767785202798 0.961140470050648 0.9755831920685298 0.4969146636197408 1.0 16.822450050892407 1.9953685798695187 1.2110490058746208 0.79675322256107 1.1082841584758267 0.2775005832781473 0.1879598485043086 0.6022670073049364 1.634606789242489 0.14098328736555496 0.06535009542567587 98.93924224485984 -1.9953685798695187 0.3115309359147568 EGLHNAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGLHNAK 7 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;; 102.72 0.0085375 1317690000.0 3153640.0 2967570.0 2671740.0 2417160.0 2488520.0 2468480.0 3013590.0 3048780.0 3986300.0 3137530.0 False True 3136661.152642343 3066343.77351605 3047897.7688196185 2723172.208162999 2805418.2713863617 2297839.7877768925 2867811.138668238 3276295.4449911467 3003929.77868334 2937290.1492254245 1.0678758288381873 1.043936287439856 1.0376563478495175 0.9271035784058005 0.9551042385534034 0.7822992183400208 0.9763458810579172 1.1154143031648132 1.0226874520637632 1.0 21.486054353261775 -0.4020758334562178 6.815030441371113 0.9999999996866302 0.9940117682562208 0.0002897384155732263 0.08748649370752815 0.0 0.0 0.09315800805002299 0.021957552907737564 0.39620884500550296 0.4020758334562178 -0.005988231430409385 EGLHYTEVCGYDIASPNAGPLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGLHYTEVCGYDIASPNAGPLFR 23 0 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 180.32 4.5879e-17 107240000.0 24935.0 33971.0 28111.0 38254.0 33917.0 35954.0 34297.0 38721.0 37235.0 37231.0 False True 24800.752730538945 35101.704199096836 32068.784454807796 43096.952477729 38236.12890819095 33468.58460661232 32637.923082736754 41610.55764125399 28058.933173437592 34854.88570493725 0.7115430800860689 1.0070813169852002 0.9200656896793439 1.2364680476236434 1.0970091605486096 0.9602264913429751 0.9363944945633128 1.1938228113414753 0.8050215229787139 1.0 15.089073276339033 5.08353858241443 1.5841938530316824 1.0389204963629994 0.2661876108409019 0.3470297870148594 0.1237249473079785 2.9482576623283814 3.435086189482889 0.031692274165415805 4.588753469527567 121210.03661306086 -5.08353858241443 -0.7727328855220975 EGLLFEGR ddPTM_BT-474_Trastuzumab_2h_R1 6 EGLLFEGR 8 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;;;;; 173.28 0.00064825 2402600000.0 1566310.0 1991310.0 1798270.0 1877570.0 1768740.0 1949860.0 1838010.0 1689000.0 2046790.0 1685090.0 False True 1557877.1609934 2057589.5495776853 2051450.7851569562 2115270.1694884133 1993978.55485667 1815070.7676767258 1749098.434419949 1815041.7565682202 1542386.0300808453 1577546.1135218702 0.9875319318022601 1.304297561853275 1.3004062243081402 1.340861069833372 1.263974813645932 1.1505659023967179 1.1087463113931348 1.1505475123742286 0.9777121675622337 1.0 20.58925074681534 1.7487627022666534 0.9201921088486263 0.9939557571399942 1.2466186251947602 0.44541152650650817 0.09863164674234921 0.5016752918317865 0.798064554757644 0.08721855898727435 0.036782474535741246 56.0741504150592 -1.7487627022666534 0.252662868054766 EGLLLWCQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGLLLWCQR 9 0 O43707;P12814-3;P12814;P12814-2;P12814-4;H9KV75;P35609-2;P35609;G3V2N5;A0A494C1A0;G3V2W4;Q08043;A0A494C166;A0A494C033;A0A087WSZ2;G3V2X9 O43707;P12814-3 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 ;; 141.39 0.00024853 992525000.0 929347.0 1033283.0 1089752.0 837899.0 722056.0 894599.0 951298.0 790818.0 1185270.0 969822.0 False True 924343.499012158 1067675.2000222364 1243179.6093058137 943976.9274882807 814005.5516387856 832757.4767895291 905280.0814287335 849832.8548524358 893176.0903042929 907927.1296536132 1.01808115301589 1.1759481186883018 1.3692504262760645 1.0397056070440598 0.8965538368143487 0.9172073942842061 0.9970845146725712 0.9360143860627436 0.9837530580731209 1.0 19.792216985712795 3.4884033750781938 21.226812968970822 0.9533735801825924 1.1895620863965164 0.6015327898828245 0.08469022935529681 46.457883161459016 87407.92744254805 0.02285172406385013 0.033213155110015706 3078.9552374559507 -3.4884033750781938 0.23618850621392395 EGLMLDSHEELYK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGLMLDSHEELYK 13 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 192.15 2.9618e-06 1005330000.0 1626530.0 1534910.0 1457450.0 1250890.0 1352120.0 1807580.0 1715540.0 1489650.0 2370800.0 1838480.0 False True 1617772.9432044723 1585998.5514773093 1662646.2916175025 1409252.5457433597 1524304.4673568753 1682626.2491856315 1632552.7762007802 1600815.2472894294 1786548.10709241 1721146.6323980845 0.939939057342499 0.9214778808633681 0.9660108327324366 0.8187870337228846 0.8856331230959981 0.9776193483533809 0.9485262588732106 0.9300864999857702 1.037998781430494 1.0 20.71493858176447 1.5160124378894697 1.0561259584097737 1.0147508962108114 0.9135285572957688 0.3901543781508884 0.04512504266981628 0.5222387333241507 1.1329214803734713 0.042168301180390805 0.015325951578549393 32.81046896668347 -1.5160124378894697 -0.10122233891504262 EGLQNMEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGLQNMEAR 9 0 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 156.46 0.00016491 3670560000.0 2033830.0 2328070.0 2197080.0 2215960.0 1919770.0 2369490.0 2343310.0 1995280.0 2874510.0 2332660.0 False True 2022880.0852597537 2405558.402601964 2506409.7666382943 2496500.3087925045 2164241.330131725 2205692.7334794933 2229955.1429864927 2144177.9254265428 2166125.5269606025 2183787.6417092993 0.9263172144688943 1.1015532630815146 1.147735117997312 1.143197379227972 0.9910493533326001 1.0100307792533565 1.021141021404928 0.9818619193889415 0.9919121647126493 1.0 21.058401140257534 3.2164216332592583 24.96653537030301 0.999290103674891 1.0861212425377642 0.31181457533092116 0.05817976678125976 268.1304869445261 302374.92907652864 0.017229049415782148 0.020607873527155096 1645.9689308734387 -3.2164216332592583 0.08683113886287319 EGLSGDALSSPSAPEPVVGT(ph)PDDKLDADYIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGLSGDALSSPSAPEPVVGTPDDKLDADYIKR 32 2 K7EJ08;Q92503-3;Q92503;Q92503-2 K7EJ08 SEC14L1 SEC14-like protein 1 1 EGLSGDALSSPSAPEPVVGT(1)PDDKLDADYIKR;EGLSGDALSSPSAPEPVVGT(1)PDDKLDADYIKR 162.87 3.0678e-12 927980000.0 366171.0 293317.0 270186.0 237149.0 252855.0 396197.0 411300.0 373934.0 655941.0 403804.0 True False 364199.5760214227 303079.87903112936 308225.84030118823 267172.0390845649 285054.5854609966 368808.83393741923 391403.8476814185 401838.8538783778 494293.12970908615 378032.88300600223 0.9634071330658294 0.8017288777133105 0.8153413476898367 0.7067428551720006 0.7540470638277005 0.975599876404306 1.0353698455253268 1.0629732807449916 1.3075400366725187 1.0 18.528152206466096 2.3401214380751827 1.741952103228873 1.121251741684631 0.8036750180884354 0.665130633811544 0.09825844305690004 0.2143175535387267 1.319946930196679 0.04782352316427406 0.03311121463032876 218.8373454676593 -2.3401214380751827 -0.3175767235961956 EGMNIVEAMER ddPTM_BT-474_Trastuzumab_2h_R1 15 EGMNIVEAMER 11 0 P62937;P62937-2 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed 0 ;;;;;;;;;;;;;; 295.35 3.2866e-35 22862782000.0 6055663.0 6896015.0 6252597.0 5840618.0 5425620.0 6400654.0 6312843.0 5597735.0 6978785.0 6145078.0 False True 6023059.983255404 7125544.690545894 7132908.30905261 6580039.639947939 6116540.546830763 5958191.85449885 6007466.666687851 6015466.410422379 5258956.947677955 5752893.860974032 1.046961777639268 1.2386017998495553 1.2398817849639459 1.143779078662484 1.063211089000547 1.0356860387982298 1.044251260646536 1.0456418205852125 0.9141411391844368 1.0 22.45585642253625 3.171441267269181 2.144616531516137 1.0165856354012954 1.1830773519631061 0.5994445117147695 0.061495627704236625 0.21339456822019925 2.013031462539774 0.019504478317330324 0.02553799826240864 1484.0251712172399 -3.171441267269181 0.16649171656181072 EGMNPS(ph)YDEYADS(ph)DEDQHDAYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 2 EGMNPS(0.994)Y(0.006)DEYADS(1)DEDQHDAYLER;EGMNPS(1)YDEYADS(1)DEDQHDAYLER 232.5 1.6482e-34 406960000.0 245620.0 264600.0 195209.0 224520.0 214860.0 256700.0 232210.0 203485.0 277260.0 254500.0 True False 244297.60921094715 273407.0510459222 222692.7304129549 252944.20897944563 242221.1474250053 238954.9332068025 220977.11517165645 218670.08397589315 208932.9880936569 238257.59211158758 1.0253507854496018 1.1475271307110013 0.9346721270844418 1.0616417581395667 1.016635588726849 1.0029268368283026 0.927471453116013 0.9177885247555064 0.8769205893586108 1.0 17.862162660984303 2.3952284398232524 1.9440779045802503 0.920051420496572 1.040265154927974 0.4372768802285856 0.05670154894177865 0.28502063100268393 2.2002367074159856 0.0239550379098145 0.018041798785137373 248.44395821768586 -2.3952284398232524 0.12021373443140204 EGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_BT-474_Trastuzumab_2h_R1 22 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER 362.0 5.975299999999996e-103 187475040000.0 20377415.0 23371736.0 21229029.0 21774164.0 22008557.0 23695289.0 23330962.0 20682523.0 25130374.0 23012539.0 True False 20267705.26178366 24149650.104247224 24217891.75717205 24530770.929844674 24811216.279012565 22057289.444140572 22202354.235129975 22225957.889983777 18937330.057459194 21543859.058994137 0.9407648465525164 1.120952844990193 1.1241204136573462 1.1386433072492441 1.1516607220215902 1.0238318670643218 1.0305653306741687 1.031660940090716 0.8790129013378052 1.0 24.360773361011358 1.8506233187026746 1.2451475317720306 0.9530609535769446 1.0955243813109217 0.3849636184834335 0.06720862426979005 0.4565502371869138 1.3141553715390035 0.052963396655337065 0.02215833238998607 70.89625890804331 -1.8506233187026746 0.14246342773397702 EGMS(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGMSPAKR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 EGMS(1)PAKR;EGMS(1)PAKR;EGMS(1)PAKR 133.23 0.00056869 1213000000.0 1342930.0 1319550.0 1108830.0 990610.0 1083690.0 1206080.0 1309100.0 1252140.0 1596840.0 1256920.0 True False 1335699.8140935507 1363470.4240651801 1264943.6258768656 1116021.1244304671 1221691.4979661352 1122706.528406935 1245773.8317523578 1345581.0450380864 1203320.178559745 1176702.2894966486 1.1351212843011595 1.1587216547767782 1.0749903668649812 0.9484311659730528 1.0382332973013346 0.9541126404089764 1.058699250330562 1.1435186767705519 1.022620750635645 1.0 20.166317928107034 4.087461149696792 4.64009408938839 1.0344920961394373 1.1452834987949796 0.45155886878993745 0.05303832185495584 0.22068113925715832 8.415561029680008 0.015240273624042431 0.034691392405278146 12230.977005702154 -4.087461149696792 0.11079140265554233 EGNASGVSLLEALDTILPPTRPTDKPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGNASGVSLLEALDTILPPTRPTDKPLR 28 2 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ; 250.05 2.2267e-46 10880800000.0 3136200.0 3036000.0 2798200.0 2497600.0 2781000.0 3233100.0 3057200.0 3162400.0 4034300.0 3362400.0 False True 3119315.0476645795 3137051.424699241 3192162.2376095885 2813795.9039152996 3135143.865721589 3009603.406898768 2909311.556361863 3398394.3463418228 3040100.821850387 3147808.753304534 0.9909480823413931 0.9965825977852052 1.0140902728790282 0.8938903613383146 0.9959766019553603 0.9560947448727056 0.9242338986787875 1.079606358796171 0.9657832035249675 1.0 21.585916461173223 1.7478252860467463 24.999999999985093 1.0217684549032746 0.9681568174341859 0.19858744313730736 0.04330698892246927 3.1537742797061354 8529.25201488713 0.01947327653174975 0.010799115870342095 55.953245980328774 -1.7478252860467463 -0.0536116374690887 EGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYK 36 3 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 159.95 8.331000000000001e-18 1952400000.0 429760.0 471940.0 407510.0 483230.0 427680.0 593830.0 636140.0 505030.0 869860.0 647420.0 False True 427446.2199108248 487648.2376062451 464883.8658595827 544406.8684533114 482142.512942038 552779.9298254593 605367.4779092094 542717.9030903777 655494.658526827 606101.1013158512 0.7052391407684874 0.8045658332373199 0.7670071294216682 0.8982113170086623 0.795481994497786 0.9120259452183288 0.9987896022543944 0.8954247103529955 1.0814939242046284 1.0 19.209198938434216 3.153727660131276 0.4047911966261833 1.0269847247379003 0.6893958556099654 0.7502870147859869 0.0562058569298977 0.865436749416243 0.25516717258071 0.0525983836799218 0.12368422979255851 1424.713895677024 -3.153727660131276 -0.33758886912793484 EGNDKDFTLNDFGFMIFHSPYCK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGNDKDFTLNDFGFMIFHSPYCK 23 1 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ; 215.42 1.6265e-32 742460000.0 2230030.0 2189250.0 2000170.0 1975520.0 1236830.0 2657200.0 2660800.0 2505660.0 3641700.0 2746700.0 False True 2218023.7662596256 2262117.8628204293 2281776.550210699 2225620.6294453708 1394332.9692342435 2473514.018375988 2532086.9387569157 2692645.072683672 2744251.8312799158 2571403.2544318205 0.8625732904540957 0.8797211635015484 0.8873662838677874 0.8655276552246356 0.542245937828346 0.9619315889535723 0.9847101711459908 1.0471500602026893 1.0672195528065038 1.0 21.294124444586757 2.493034338009234 24.819710162119236 1.0221320025200478 0.8124547779771213 0.5367314562395472 0.09645046533101044 534.7671923827123 834079.6121514825 0.03275589798621004 0.030063481972469025 311.1962378382152 -2.493034338009234 -0.20967722454292648 EGNDLYHEMIESGVINLK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGNDLYHEMIESGVINLK 18 0 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta 0 ;;; 269.33 9.682299999999999e-32 1674770000.0 2389680.0 2257750.0 2466570.0 1858240.0 2671680.0 4704190.0 2424320.0 1987910.0 3399670.0 2961490.0 False True 2376814.2283984073 2332897.843911306 2813841.616189227 2093492.993470359 3011902.611711988 4379000.417772143 2307046.379798244 2136257.9386024433 2561866.8817440756 2772485.172740848 0.8572865426900428 0.8414464635729789 1.0149167410722326 0.7550961909746681 1.0863548131204088 1.579449535321811 0.8321221705642249 0.7705209606190834 0.9240326718182023 1.0 21.402748314194316 3.2256033230722014 24.938317415018975 1.0150625203831514 0.8759000481514213 0.12062348849870219 0.21467397194518226 648.9612745327321 1249023.8952438582 0.06952572462637147 0.0835906337998172 1681.1378379170346 -3.2256033230722014 -0.13916247223173006 EGNNPAENGDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGNNPAENGDAK 12 0 P05204 P05204 HMGN2 Non-histone chromosomal protein HMG-17 0 ; 224.03 4.8931e-11 432430000.0 586370.0 610320.0 591430.0 545620.0 558620.0 711500.0 733890.0 604740.0 944180.0 673660.0 False True 583213.0490718313 630634.1322537698 674698.2031982854 614695.4360563203 629756.9457998527 662315.6796908453 698388.9369679461 649868.7696074989 711499.4903638053 630666.442050657 0.9247567496622658 0.9999487688027571 1.0698178279542765 0.9746759857042563 0.998557880695464 1.0501837984866906 1.1073824297628467 1.0304476761033996 1.128170841071413 1.0 19.26651764345507 2.670283264162041 4.009138781325071 1.0673422808172253 0.9968501505309048 0.35439205903383075 0.04720940653696105 0.26647530757057425 8.446523947054471 0.015277421375413486 0.014550040578674896 468.0403162922904 -2.670283264162041 -0.07049213028632051 EGNTTEDDFPSS(ph)PGNGNK ddPTM_BT-474_Trastuzumab_2h_R1 6 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPS(0.002)S(0.998)PGNGNK;EGNTTEDDFPS(0.001)S(0.999)PGNGNK;EGNTTEDDFPS(0.001)S(0.999)PGNGNK;EGNTTEDDFPS(0.038)S(0.962)PGNGNK 505.28 5.780399999999994e-267 3411770000.0 7820470.0 6600520.0 5862600.0 5632400.0 5849370.0 8038520.0 7769490.0 7403680.0 9950910.0 7856100.0 True False 7778365.458455893 6820214.318101395 6688003.121367302 6345461.262497014 6594252.597567734 7482836.033040693 7393650.0863659335 7956180.196725277 7498641.565862552 7354716.972054397 1.0576022827270208 0.9273251906247456 0.9093488093123914 0.8627743646163087 0.8966018165789129 1.017419985224871 1.0052936250925046 1.0817792481962598 1.019569018679444 1.0 22.810238393350833 2.632036509392628 4.751630310275945 1.03463956090637 0.9258266665709113 0.4449049697347367 0.052047027031484616 0.20053761071019338 7.19431979624809 0.01794784143951081 0.016865514546508812 428.58454826450173 -2.632036509392628 -0.10881289433545882 EGPAHEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGPAHEPK 8 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 79.906 0.026824 546900000.0 1602340.0 1493180.0 1277360.0 1230850.0 1229950.0 1468320.0 1568660.0 1454680.0 2203020.0 1447610.0 False True 1593713.1794767096 1542879.5936536295 1457201.1849878447 1386675.4837981062 1386576.8420151982 1366818.4944534968 1492777.9229368682 1563235.6083153684 1660115.2399555934 1355222.2904387258 1.175979166458941 1.1384697584587053 1.0752488320688005 1.02320888136307 1.0231360949400574 1.0085566804033432 1.1015004206089405 1.153490183377446 1.2249763390610735 1.0 20.370098078475976 -0.24352801159420523 7.676930556376516 1.0000000018712005 1.099397094552002 0.16798577417949279 0.06822581843734865 0.0 0.0 0.07200580595147735 0.016971931224364103 0.5707842599253586 0.24352801159420523 0.09939709268080144 EGPDLDRPGS(ph)DR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGPDLDRPGSDR 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 EGPDLDRPGS(1)DR;EGPDLDRPGS(1)DR;EGPDLDRPGS(1)DR;EGPDLDRPGS(1)DR 160.04 4.1865e-05 3033230000.0 3872180.0 4001830.0 3657090.0 3597990.0 3702510.0 4291400.0 4004580.0 3850310.0 4656270.0 4252630.0 True False 3851332.6131196464 4135028.492392684 4171976.4840038847 4053495.1650897763 4174002.702003892 3994745.6188690006 3810863.1664188053 4137639.683678024 3508794.649321402 3981223.5125402785 0.9673741253131117 1.0386325910534644 1.047913153045229 1.0181531261236283 1.048422096588244 1.003396470026395 0.9572090475239928 1.0392884676394223 0.8813357597907292 1.0 21.924780438337343 1.2566663280513264 24.99882216879878 0.9406678179314508 1.0160134712577245 0.353867383723787 0.04018629989127244 209.50890703356615 289273.9873533234 0.02549679441969717 0.00927039389119203 18.057861928215853 -1.2566663280513264 0.07534565332627363 EGPDLDRPGS(ph)DRQER ddPTM_BT-474_Trastuzumab_2h_R1 3 EGPDLDRPGSDRQER 15 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 EGPDLDRPGS(1)DRQER;EGPDLDRPGS(1)DRQER;EGPDLDRPGS(1)DRQER 184.8 2.3449e-07 1444460000.0 335018.0 380966.0 366484.0 419480.0 347960.0 423621.0 411987.0 376253.0 516543.0 471719.0 True False 333214.3003119989 393646.2230111902 418081.76166396745 472586.1249897464 392270.6434794973 394337.0773665712 392057.61486682395 404330.9094340213 389247.898971585 441613.48956104554 0.7545383195681066 0.8913817904486255 0.9467142004188592 1.0701351660690595 0.8882668957178051 0.8929461773428476 0.8877845087035745 0.9155764463533884 0.8814221217709838 1.0 18.752424715904315 4.704990137238115 3.0057700382974137 0.9303369985236075 0.7327675693272023 0.47518502465153356 0.05687112636454718 0.3123779035309577 4.332403403955568 0.014428286514343708 0.1417575593983281 50697.91947232681 -4.704990137238115 -0.1975694291964052 EGPDLDRPGSDR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGPDLDRPGSDR 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 ;; 112.43 0.00021887 3214000000.0 2639950.0 2890330.0 2571040.0 2585210.0 2576930.0 3007680.0 2865860.0 2638300.0 3286830.0 2857740.0 False True 2625736.802526021 2986532.886808621 2933020.0841197097 2912497.320932444 2905086.760839242 2799766.160917165 2727227.403151641 2835183.343015944 2476834.7877655406 2675356.5865656915 0.9814530203977906 1.116312084080867 1.0963099643792815 1.0886389259501164 1.0858689923530722 1.046502053212718 1.019388374935296 1.0597403565763244 0.9257961350658718 1.0 21.351299764159208 1.6310485281156721 1.1427169505245498 0.9733650291679353 1.0747141552517996 0.4040921159462343 0.04390702303653223 0.43981039978686515 1.0895986502038015 0.03701901090425252 0.01378018821773472 42.761066474731315 -1.6310485281156721 0.10134912608386426 EGPEPPEEVPPPTT(ph)PPVPK ddPTM_BT-474_Trastuzumab_2h_R1 6 EGPEPPEEVPPPTTPPVPK 19 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 EGPEPPEEVPPPT(0.021)T(0.979)PPVPK;EGPEPPEEVPPPT(0.002)T(0.998)PPVPK;EGPEPPEEVPPPT(0.084)T(0.916)PPVPK;EGPEPPEEVPPPT(0.004)T(0.996)PPVPK;EGPEPPEEVPPPT(0.013)T(0.987)PPVPK;EGPEPPEEVPPPT(0.181)T(0.819)PPVPK 248.18 1.3206999999999998e-28 1645960000.0 2796580.0 2438090.0 2177170.0 2051860.0 2078280.0 2571680.0 2480990.0 2510250.0 3497920.0 2572120.0 True False 2781523.5240092506 2519240.351793469 2483696.611699118 2311625.2656180523 2342936.6390693486 2393905.814683559 2360975.0353978216 2697577.6017912175 2635904.4857266247 2407965.0994972773 1.1551344845446319 1.0462113227136984 1.0314504193676441 0.9599911834688392 0.972994433996778 0.9941613419494104 0.9804855709456645 1.120272715893766 1.094660585519672 1.0 21.199383051476985 -0.20024084995661084 7.026623740604985 1.0000034550097379 1.0372862505974534 0.03337831671190772 0.06274912579453466 0.0 0.0 0.06476602590489694 0.015265498702618749 0.6306075267305251 0.20024084995661084 0.03728279558771552 EGPGEEHFEDMAS(ph)DEDMKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGPGEEHFEDMASDEDMKPK 20 1 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 EGPGEEHFEDMAS(1)DEDMKPK 182.17 2.9172e-17 221830000.0 149300.0 93683.0 84505.0 78180.0 71851.0 134020.0 116710.0 119270.0 227320.0 128530.0 True False 148496.18538878928 96801.18202243053 96402.56946937255 88077.57998402407 81000.79895575755 124755.51284914554 111064.29142450368 128170.53304078839 171300.03193194114 120327.10535993084 1.2341041941015463 0.8044835927272752 0.8011708515800032 0.7319845326666861 0.6731716741083591 1.0368030750508637 0.9230197227156792 1.0651842131280043 1.4236196526089158 1.0 16.87660214075442 1.6337349217091701 2.499539160660358 1.2186256725708495 0.8660472316553657 0.3435207694661443 0.17986554760379683 0.2538819344658703 3.5950825353836104 0.12284060613311394 0.04872164178268386 43.02639121580561 -1.6337349217091701 -0.35257844091548385 EGPLGWSSDGSLGSVLLDSPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGPLGWSSDGSLGSVLLDSPSSPR 24 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 EGPLGWSSDGSLGSVLLDS(0.003)PS(0.602)S(0.395)PR 140.17 1.9314e-07 33412000.0 54635.0 49805.0 65129.0 59865.0 48681.0 79613.0 66190.0 56351.0 79222.0 72534.0 True False 54340.85123051916 51462.72931724175 74298.59708858379 67443.90286190322 54880.23679510699 74109.54069884359 62988.13682964525 60556.19776458 59698.79962041279 67904.81802051832 0.8002503035071734 0.7578656539760054 1.0941579589556298 0.9932123349704608 0.8081935626206114 1.091373820874543 0.9275945163509984 0.891780576545867 0.8791541065962952 1.0 16.051226320554207 4.268435049260564 24.999370787903274 0.9523341550476428 0.7790577201283326 0.41145944049280525 0.08642799155932143 204.64208730112105 171244.25399382747 0.02086400182939543 0.05712174826764022 18553.893066694087 -4.268435049260564 -0.17327643491931022 EGPLGWSSDGSLGSVLLDSPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGPLGWSSDGSLGSVLLDSPSSPR 24 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 EGPLGWSSDGSLGSVLLDSPS(0.207)S(0.792)PR 162.83 1.1294e-11 35997000.0 55367.0 70176.0 67019.0 68923.0 57853.0 73759.0 66286.0 73103.0 91827.0 60332.0 True False 55068.91022385199 72511.76573771215 76454.69266040933 77648.64473316565 65220.23662840379 68660.21394000995 63079.49294288961 78558.31706951247 69197.4662687593 56481.56010717612 0.9749891844233133 1.2838130816521012 1.3536221824491632 1.3747609766058888 1.1547173361473315 1.2156217677012522 1.1168156974275079 1.3908666283375457 1.225133762903401 1.0 15.785492318155024 EGPLPAARPAGAT(ph)LERPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGPLPAARPAGATLERPK 18 2 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 EGPLPAARPAGAT(1)LERPK;EGPLPAARPAGAT(1)LERPK;EGPLPAARPAGAT(1)LERPK 142.45 5.365e-06 2183700000.0 645296.0 804318.0 838965.0 718937.0 924636.0 1295600.0 959130.0 777129.0 1751330.0 972118.0 True False 641821.7980351249 831089.238409501 957083.9795854947 809954.3504857287 1042382.9138530535 1206038.2215143503 912733.2176675884 835122.3121611036 1319738.1881196843 910076.5969679086 0.7052393174085291 0.9132080103789408 1.0516521167275372 0.8899848135687084 1.1453793200769564 1.325205181116066 1.00291911769683 0.9176395865397162 1.450139683315273 1.0 19.795628449874766 5.379426767985483 0.6843068230245866 1.1098673267119858 4.5800139085260035e-11 0.39090138361377635 0.16172215063698547 7.504656321787046 1.4154334956083345 0.06438146061255372 7.8874869751828225 239566.8750964861 -5.379426767985483 -1.1098673266661858 EGPLSVFGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGPLSVFGDR 10 0 P17987;E7ERF2;F5GZ03;F5GZI8;F5GYL4 P17987 TCP1 T-complex protein 1 subunit alpha 0 116.05 0.0026559 59290000.0 38116.0 39422.0 34916.0 35076.0 35345.0 41679.0 37256.0 29811.0 47265.0 39924.0 False True 37910.7876910857 40734.13743889775 39831.86930468748 39516.61800357671 39845.97624377181 38797.82883181271 35453.784948259046 32035.648197190738 35617.174068551816 37376.01613934393 1.0143078799449374 1.0898469565893325 1.0657066594841926 1.0572720713800066 1.0660840924088717 1.0380407769294628 0.9485704633709894 0.8571177858484591 0.9529419597788363 1.0 15.189825181850544 2.222285178505637 3.461306178580299 0.9171431337339133 1.0597334771920193 0.6751945029470876 0.03871899511064129 0.11078821381433798 2.80345323165454 0.0147197733821411 0.010913186396426815 166.83423662508653 -2.222285178505637 0.14259034345810595 EGPPAPPPVKPPPS(ph)PVNIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGPPAPPPVKPPPSPVNIR 19 1 Q8TF74;Q8TF74-2 Q8TF74 WIPF2 WAS/WASL-interacting protein family member 2 1 EGPPAPPPVKPPPS(1)PVNIR;EGPPAPPPVKPPPS(1)PVNIR 182.41 1.7761e-14 6189700000.0 5604500.0 4979800.0 5054000.0 4551000.0 4118360.0 5372800.0 4757300.0 5421700.0 7078800.0 5302300.0 True False 5574325.994718491 5145549.6326473355 5765559.269844494 5127156.133375461 4642808.734567836 5001390.982210786 4527171.224349169 5826294.784834764 5334324.591060299 4963902.6744725825 1.1229724594289645 1.0365935776921842 1.161497242783288 1.0328881264619525 0.9353142152532508 1.0075521842785096 0.912018530828706 1.1737326790867855 1.0746231223453782 1.0 22.24304339864574 3.5678888116250613 10.197357912115216 1.0245191905885418 1.0997454998945277 0.22476567096460254 0.07390503119290294 0.9523831423130957 102.31425945325597 0.02122177862450031 0.03288151144958613 3697.335082322333 -3.5678888116250613 0.07522630930598595 EGPSCPS(ph)PGPFCR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGPSCPSPGPFCR 13 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 EGPS(0.007)CPS(0.993)PGPFCR;EGPSCPS(1)PGPFCR 244.26 5.2191999999999995e-17 378100000.0 523970.0 639250.0 533810.0 525560.0 518320.0 580360.0 544230.0 516100.0 659910.0 614420.0 True False 521149.00373853924 660527.0498152149 608965.808040303 592095.8421131186 584324.9796766674 540241.079220491 517903.51573950594 554614.0027026985 497284.02284096193 575207.1895685731 0.9060196276917547 1.1483289183339918 1.0586894932538136 1.029360990006423 1.0158513145757668 0.9392112772889574 0.9003773338228838 0.9641986622571246 0.8645302629369837 1.0 19.13372218270725 2.840650605428722 2.4787731823337786 0.9300169525265151 1.0449582772520614 0.3653173436189888 0.06454373427668325 0.28551348061332554 3.436506815046462 0.020607952361513228 0.021857129457843582 692.8681618596322 -2.840650605428722 0.1149413247255463 EGPVAS(ph)PPFMDLEQAVLPAVIPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGPVASPPFMDLEQAVLPAVIPK 23 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 EGPVAS(1)PPFMDLEQAVLPAVIPK;EGPVAS(1)PPFMDLEQAVLPAVIPK;EGPVAS(1)PPFMDLEQAVLPAVIPK 141.5 1.1773e-07 193678000.0 229685.0 229635.0 189976.0 200317.0 207777.0 250615.0 234216.0 233060.0 321681.0 240246.0 True False 228448.4014804026 237278.2621577111 216722.96949900614 225677.11166103504 234236.16935923576 233290.57493425303 222886.07728799208 250452.12065470012 242407.02785456082 224913.29459505147 1.0157176430664803 1.054976597025633 0.9635845221564526 1.003396051208795 1.0414509723890257 1.0372467103569158 0.9909866719496981 1.1135496507915659 1.0777798986538623 1.0 17.77900941558578 1.7473634182571018 24.999999999999964 1.0739822712689324 1.0162588022245056 0.2587054181905981 0.036340868309294234 2.2599988785352347 6433.583171835702 0.016241585975207525 0.009006929955300723 55.893771899710345 -1.7473634182571018 -0.05772346904442682 EGPYSISVLYGDEEVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGPYSISVLYGDEEVPR 17 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 318.88 4.6363999999999994e-58 491880000.0 157384.0 174239.0 167536.0 156269.0 158383.0 182369.0 193900.0 172775.0 225420.0 216030.0 False True 156536.66203100616 180038.4397853003 191123.61255098312 176052.63937737863 178552.13624041062 169762.26028044932 184520.31623006842 185668.347833673 169868.26147324554 202242.7804474121 0.7740037082397083 0.8902094768822392 0.9450206930905984 0.870501478410778 0.8828603713092166 0.8393983701415315 0.9123703492498614 0.9180468515263078 0.839922498580439 1.0 17.62572867746972 -4.999999999999954 0.21929167626700577 1.594679212680235 0.8653319082027464 0.3920588488946598 0.04632031643448804 164.03312014135557 1.6409285078858695 43.17227298547636 0.08844602132673653 1.0000000000001063e-05 4.999999999999954 -0.7293473044774885 EGQEDQGLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGQEDQGLTK 10 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20;A0A087WUW5;O95758-1;O95758-6;O95758;O95758-5;O95758-4;O95758-2;O95758-7 A6NLN1;O95758-1 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 0 109.24 0.004758600000000001 483390000.0 187880.0 175350.0 150830.0 175960.0 155530.0 185320.0 189390.0 179480.0 251360.0 212400.0 False True 186868.47495543017 181186.41874868656 172065.5529621382 198236.51795841468 175335.82360146637 172509.2645963564 180228.4821599412 192873.7089809734 189415.6960514375 198844.45015521123 0.9397721425444209 0.9111967601170593 0.8653274095798483 0.9969426745563076 0.8817737858140128 0.8675588605148472 0.9063792427661972 0.969972804523449 0.9525822616803538 1.0 17.6012807708254 1.712372417606435 5.087730532639269 0.9715634926738494 0.9087509888651548 0.3776303632301221 0.037748952505333666 0.17580823304711551 10.909559074408095 0.019717922172083898 0.00984620215138194 51.56706546025478 -1.712372417606435 -0.06281250380869463 EGQEKEESKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGQEKEESKK 10 2 P51665 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 52.928 0.082637 183740000.0 299530.0 180210.0 156240.0 148680.0 134250.0 128700.0 209680.0 204760.0 424130.0 221600.0 False True 297917.3637609117 186208.18091075457 178237.2339375749 167502.87275549636 151345.94173790843 119803.27192721264 199536.97734461445 220040.23095021214 319608.84455082775 207457.29827869489 1.436041856482167 0.8975735366060992 0.8591514273849927 0.8074089181016694 0.7295281631142843 0.5774840071727474 0.96182192190973 1.0606531212732442 1.540600630600473 1.0 17.662454886070435 1.5617936112723474 3.2879334579277018 1.277290609456505 0.8725316183725481 0.26559467409275284 0.24313476575038273 0.24560464406986557 6.0268126546637735 0.16076463456395235 0.06399559362642201 36.45806469617528 -1.5617936112723474 -0.40475899108395696 EGQLLHVYPVLFNVGINEQQTLAER ddPTM_BT-474_Trastuzumab_2h_R1 2 EGQLLHVYPVLFNVGINEQQTLAER 25 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 233.56 2.3037e-38 442460000.0 184137.0 223711.0 210820.0 246149.0 220841.0 247803.0 261730.0 207475.0 255340.0 252460.0 False True 183145.62685154387 231157.08539884476 240501.6235197105 277311.43816177425 248963.79232284092 230672.96187551747 249069.1199943055 222957.8380367028 192414.87838070502 236347.7866581196 0.7748988447963195 0.9780378681236255 1.0175751037076537 1.173319378543236 1.053378987986761 0.9759895158620171 1.053824634941843 0.9433464183830689 0.8141175388244098 1.0 17.85055182869417 -3.1579644936641 13.242280439515545 0.9999536387525819 0.986601808581593 0.0 0.11027527662767363 0.0 0.0 0.0 0.02480713779850551 0.0006950811425698108 3.1579644936641 -0.013351830170988954 EGQPSPADEKGNDS(ph)DGEGESDDPEK ddPTM_BT-474_Trastuzumab_2h_R1 6 EGQPSPADEKGNDSDGEGESDDPEK 25 1 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(0.992)DGEGES(0.008)DDPEK 290.45 4.8502999999999984e-63 7462000000.0 8017110.0 4552570.0 4225780.0 3753220.0 4093240.0 6622470.0 6590200.0 6137380.0 9922380.0 5936680.0 True False 7973946.770544659 4704099.540363315 4820733.09286179 4228377.267173684 4614489.851465743 6164674.23651755 6271406.848991216 6595382.460584162 7477142.402080122 5557795.999752544 1.4347318201135293 0.8463965824893106 0.8673821588767254 0.760801092260664 0.8302733406679913 1.1091940468473522 1.1283981724536931 1.1866902745041048 1.3453430824760455 1.0 22.406081450363793 2.5574090727223164 4.3719883776399 1.1743220182689675 0.9280711570781817 0.22353807934454795 0.1915997393810892 0.3110786464378335 10.871356760071325 0.0643764060261316 0.059384633911041824 360.91844097760526 -2.5574090727223164 -0.24625086119078587 EGQPSPADEKGNDS(ph)DGEGESDDPEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGQPSPADEKGNDSDGEGESDDPEKK 26 2 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 EGQPSPADEKGNDS(1)DGEGESDDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK 222.66 1.2831e-34 2343290000.0 2481995.0 1207707.0 965234.0 892259.0 967350.0 1960158.0 1812684.0 1620673.0 3572180.0 1624794.0 True False 2468632.214695567 1247904.7974207005 1101130.557235671 1005218.8979146237 1090536.2885673414 1824656.891175613 1724997.5497946625 1741615.848870742 2691864.1037596418 1521098.2558638703 1.6229275164697154 0.8203972311518981 0.7239049502494571 0.6608507333694459 0.7169400690345268 1.199565435133146 1.134047418136702 1.1449726157772984 1.769684564019741 1.0 20.53668191677787 2.627103466551833 5.924610074854426 1.2443905298198696 0.8808952860002827 0.22100064450301926 0.3182250546887885 0.35992310134198696 16.596388125457615 0.10465270453663798 0.09840172038560319 423.74390700212285 -2.627103466551833 -0.363495243819587 EGQPSPADEKGNDS(ph)DGEGESDDPEKKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGQPSPADEKGNDSDGEGESDDPEKKK 27 3 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 EGQPSPADEKGNDS(1)DGEGESDDPEKKK;EGQPSPADEKGNDS(1)DGEGESDDPEKKK 220.24 2.0166999999999995e-34 651440000.0 561250.0 297650.0 186155.0 218887.0 206274.0 448170.0 477440.0 372750.0 1153020.0 425690.0 True False 558228.2923607365 307557.1003167757 212364.00591173375 246598.07175701013 232541.7712182143 417189.0627787018 454344.4032020822 400566.49778614775 868873.670676433 398522.09974845516 1.4007461385782294 0.7717441529865067 0.5328788693168501 0.6187814224422219 0.5835103532903027 1.0468404714369142 1.1400732945271084 1.0051299489764383 2.180239618392207 1.0 18.604300204457967 1.7575557500003482 1.489143143109377 1.5117180888759683 0.7905339470438238 0.3294981375387239 0.3802690238572416 0.4234921288143425 1.8051437297065043 0.28860553600355787 0.1142508476245738 57.22104040837823 -1.7575557500003482 -0.7211841418321444 EGQRPTQPVYQIQNR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGQRPTQPVYQIQNR 15 1 Q9H0W8-2;Q9H0W8;M0R2N0;M0QZC7;M0R0U0 Q9H0W8-2 SMG9 Protein SMG9 0 ;;; 197.47 7.67e-09 997710000.0 217486.0 306008.0 270310.0 319174.0 311096.0 277238.0 277837.0 235044.0 231221.0 271781.0 False True 216315.07954096605 316193.2912942577 308367.29842336086 359581.39567435224 350712.23158954387 258073.18960805426 264396.9628695901 252584.176809248 174239.68275266324 254435.70389657962 0.8501758056286454 1.2427237469108527 1.2119655130975753 1.4132505390065506 1.3783923648235223 1.0142962864714662 1.0391503976071668 0.9927230060130074 0.6848083035684582 1.0 17.956941606616812 2.0993750480245676 1.4411502576140027 0.8806251459648813 1.2215343550883218 0.3961354283209314 0.16898938437937852 0.42615191552023973 1.676013192370054 0.11120783285336125 0.05754320950706464 125.71151145288573 -2.0993750480245676 0.34090920912344047 EGRGES(ph)ENAGTNQETR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 EGRGES(0.995)ENAGT(0.005)NQET(0.001)R;EGRGES(1)ENAGTNQETR 108.45 0.0027609 191453000.0 101988.0 128823.0 122683.0 148381.0 134778.0 155007.0 151312.0 124723.0 169529.0 161761.0 True False 101438.9079399321 133110.79567985213 139955.7000202479 167166.01938615346 151941.17940820713 144291.7309372296 143992.46049202717 134030.46359056118 127750.84952221572 151437.27448944031 0.669841082929721 0.8789830385459949 0.9241826392616896 1.1038631007441295 1.0033274827512955 0.9528151600964729 0.9508389594139699 0.8850559681718723 0.8435892018851922 1.0 17.20836082574722 4.72746279989504 2.106130787512128 0.9561887756402636 0.5955022518463048 0.6308182311453989 0.06669824821762069 0.47349642922011426 2.3781198096885388 0.01867414691429383 0.3216791061900912 53390.35393565503 -4.72746279989504 -0.3606865237939588 EGRPPEPTPAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGRPPEPTPAKR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 113.69 0.0006401 1020860000.0 577780.0 597250.0 584090.0 549140.0 613920.0 678700.0 648390.0 638100.0 859330.0 664880.0 False True 574669.296677393 617129.1052047512 666324.7949987093 618661.0676954074 692099.0730110735 631783.0664879502 617024.898609665 685718.262206145 647559.6359320562 622446.7891675933 0.9232424468698861 0.9914568055368178 1.070492782025263 0.9939179998385909 1.1119007842206514 1.0149993179864296 0.9912893910736063 1.1016496094761214 1.0403453712052184 1.0 19.24759098585815 4.560886787314047 2.8463336663163337 1.0445069293446343 0.9203505403730481 0.4347462488962507 0.041198681361841356 0.26644637026757745 3.6221843579485458 0.009860131857647924 0.0618703332979982 36382.01824487421 -4.560886787314047 -0.1241563889715862 EGRPSGEAFVELESEDEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGRPSGEAFVELESEDEVK 19 1 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;E7EN40;D6R9T0;D6RFM3;D6RDU3;D6RJ04;D6RIH9;D6RAM1;D6RDL0;E7EQJ0 P31943;E7EQJ0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ;;; 283.08 7.7606e-40 2342380000.0 2715580.0 2340040.0 2104200.0 1989740.0 2179530.0 2833940.0 2650030.0 2648790.0 4055060.0 2876350.0 False True 2700959.619009301 2417926.8168159476 2400453.0699657314 2241640.8799873637 2457080.226413582 2638036.3981771967 2521837.9248023117 2846456.1600830867 3055744.7980201356 2692778.8804328702 1.0030380283490323 0.8979299542141613 0.8914408410615035 0.8324637779493483 0.9124701044961407 0.9796706359168735 0.9365187550776247 1.0570701444396031 1.1347923218741667 1.0 21.360664336036994 1.850711889974926 1.7678843355605685 1.0781080215587862 0.9101476919061514 0.5849210745912787 0.05437740406848597 0.23028137840457255 1.3628272172655094 0.03722814764238604 0.016439347308026292 70.91071917054074 -1.850711889974926 -0.16796032965263474 EGS(ph)LS(ph)PASVGSDTLSDLGISSLQDGLALHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGSLSPASVGSDTLSDLGISSLQDGLALHIR 31 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 2 EGS(0.991)LS(0.966)PAS(0.038)VGS(0.005)DTLSDLGISSLQDGLALHIR;EGS(0.955)LS(0.536)PAS(0.478)VGS(0.027)DT(0.003)LS(0.001)DLGISSLQDGLALHIR 125.42 3.4608e-06 103463000.0 37493.0 35092.0 30126.8 32503.0 40173.0 49431.0 37982.0 37435.0 49355.0 43478.0 True False 37291.14185386392 36260.01600643803 34368.39157316011 36617.87646739231 45288.79342597387 46013.95131805785 36144.66555466969 40228.5897910783 37192.12157311701 40703.19681661145 0.9161723100492433 0.8908395124296452 0.8443659039364192 0.8996314621766545 1.1126593724326581 1.1304751203050227 0.8880055715898617 0.9883398095812598 0.9137395703999954 1.0 15.31285448731747 3.4458705837576833 24.758024956999286 1.0018868244234989 0.8824141387195408 0.38931011268691895 0.07238075456283433 193.711026147625 153464.97497652337 0.021418607567240663 0.02900123527698535 2791.711809738837 -3.4458705837576833 -0.11947268570395808 EGS(ph)PANWK ddPTM_BT-474_Trastuzumab_2h_R1 8 EGSPANWK 8 0 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK 122.69 0.0014472 6162450000.0 9921910.0 7481850.0 6840430.0 6340800.0 6638180.0 9270310.0 9017710.0 8064410.0 11947010.0 8542800.0 True False 9868491.538987825 7730878.854376166 7803503.085916573 7143544.629863126 7483512.875424562 8629475.289662458 8581488.916302474 8666217.224444233 9002829.467232183 7997591.190140964 1.2339329811147655 0.9666509165792835 0.9757316797508163 0.8932120259746879 0.9357208561310144 1.0790093022384601 1.0730091989299615 1.0836034273829247 1.12569263084245 1.0 22.93113410665751 2.7098453734479047 22.79862679561834 1.0779148262505862 0.9917411168261534 0.13011020795847017 0.08988884023076248 431.39539936339304 342507.2021546548 0.029291145881971386 0.02762391604309963 512.678816919672 -2.7098453734479047 -0.08617370942443281 EGS(ph)PAPLEPEPGAAQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGSPAPLEPEPGAAQPK 17 0 Q01167;Q01167-2 Q01167 FOXK2 Forkhead box protein K2 1 EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK 270.75 1.4287e-35 2952850000.0 3834590.0 2689970.0 2343190.0 2028440.0 2136780.0 3583690.0 3406270.0 3386210.0 4949510.0 3236030.0 True False 3813944.993503003 2779504.025328793 2673090.784627412 2285240.296019361 2408886.2673126855 3335957.9453988574 3241495.7068849686 3638906.185025967 3729769.580536085 3029503.794895329 1.2589338887541406 0.9174783111386815 0.8823526774026598 0.7543282500157149 0.7951421851233937 1.1011565494718638 1.0699757869083522 1.2011558431309683 1.2311486741890516 1.0 21.530650082076104 2.5955230679872523 5.647555948612571 1.1391240863475778 0.9105169849194946 0.3323531546950681 0.14023647347343907 0.2568446482560871 10.925547316059642 0.04765272641165622 0.04468842816183213 394.0243560880286 -2.5955230679872523 -0.22860710142808316 EGS(ph)PIPHDPEFGSK ddPTM_BT-474_Trastuzumab_2h_R1 8 EGSPIPHDPEFGSK 14 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK 237.01 1.7935000000000002e-17 23719580000.0 47439300.0 35549620.0 31802220.0 30243360.0 30751910.0 44509800.0 40413700.0 41624300.0 68402000.0 41732500.0 True False 47183892.07980171 36732867.61150094 36279696.14614844 34072166.27507847 34667983.45764915 41432942.29079916 38458734.93567356 44730516.62991271 51545243.639840946 39069096.121009216 1.2077037035527627 0.9402026475792467 0.9286034167204399 0.872100193194803 0.8873505378847659 1.0605042451575633 0.9843773916999468 1.1449078957795262 1.3193354532746087 1.0 25.21952454279885 1.6973562030493163 3.700956821961414 1.1810318954485575 0.9729802979172641 0.30861117642001434 0.11635985439264525 0.2014727211867565 6.366677865562522 0.06485537891667743 0.030452389990832697 49.81454903409489 -1.6973562030493163 -0.20805159753129332 EGS(ph)QGELTPANSQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGSQGELTPANSQSR 15 0 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;J3QQX0 Q13098-7 GPS1 COP9 signalosome complex subunit 1 1 EGS(1)QGELTPANSQSR 171.25 2.8505e-11 0.0 204280.0 170410.0 134280.0 132820.0 129760.0 178680.0 171730.0 144010.0 209660.0 167090.0 True False 203180.17917764175 176081.99383497986 153185.45681731668 149634.99838165875 146284.16685222325 166328.27216747767 163422.76382769286 154756.75746796269 157992.10230006528 156426.17314705384 1.2988886392217445 1.1256555747192505 0.9792827743302868 0.9565854317805831 0.9351642625349132 1.0633020601425507 1.044727749454445 0.9893277726770074 1.0100106594792122 1.0 17.255122398273265 4.575014233665548 2.453639923414052 0.9977205282479366 1.3183402617270799 0.8671945446427302 0.03673771254645934 0.13483936389642664 1.2637551506489335 0.01009003596029728 0.07742592395616933 37584.97222703676 -4.575014233665548 0.3206197334791433 EGSEFSFS(ph)DGEVAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGSEFSFSDGEVAEK 15 0 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 EGSEFS(0.001)FS(0.999)DGEVAEK 201.24 1.6897e-11 0.0 62090.0 68701.0 53086.0 51307.0 56185.0 70235.0 62085.0 72959.0 88392.0 70895.0 True False 61755.71433884754 70987.67125436843 60560.047368216285 57802.46093937478 63339.82671541434 65379.81976540629 59081.71136226812 78403.57105829532 66608.97599211751 66370.42040373688 0.9304704409461672 1.0695679012208212 0.9124553829827263 0.8709069580659204 0.9543381875557337 0.9850746668123438 0.8901813639701102 1.181302914481478 1.0035943058207177 1.0 16.018252792132834 1.7517446717542338 24.999999999994262 1.0771736809825145 0.9473584765725634 0.36197337519760564 0.07016870462690143 3.775777514045827 7170.5014532752975 0.031639816811961534 0.017546154239806808 56.46049374981066 -1.7517446717542338 -0.1298152044099511 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR 30 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 ; 153.12 1.166e-08 224150000.0 96671.0 107418.0 101393.0 101908.0 96873.0 92120.0 108799.0 101316.0 116683.0 111718.0 False True 96150.53407715769 110993.34319444765 115668.25307624515 114809.5423511373 109209.20233874409 85751.96122715488 103535.97671745843 108876.71439222347 87928.03812209525 104588.06159340817 0.9193260933637738 1.0612429516663227 1.1059412643664037 1.0977308557210448 1.0441842087417286 0.819902003352164 0.9899406790801824 1.0410051848507114 0.8407081724482124 1.0 16.674358656203765 2.9606219322046865 24.937709771773896 0.9513088979876507 1.0538639910162362 0.30169807853679886 0.08012502320396403 696.8483037121198 441306.42031077837 0.025000136101827213 0.026521007705477433 913.3178217512381 -2.9606219322046865 0.10255509302858545 EGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTR 34 0 O75390;B4DJV2;A0A0C4DGI3 O75390 CS Citrate synthase, mitochondrial;Citrate synthase 0 ; 381.01 1.695799999999999e-149 1023720000.0 343320.0 396280.0 433030.0 411330.0 448700.0 732410.0 376500.0 290020.0 475180.0 473670.0 False True 341471.60326643795 409469.9402436816 493996.86003576673 463404.3358253847 505839.2853467372 681780.2206076902 358287.256630329 311662.7650917197 358078.25608578173 443439.97507071035 0.7700514668574644 0.923394288434163 1.1140106616616932 1.045021562955597 1.140716475248035 1.5374802880569673 0.8079723903403093 0.7028296559010548 0.8075010739135168 1.0 18.75837930606897 2.0494833894243856 24.999995488461348 0.7916642794731884 1.090026029193371 0.2863754421018556 0.1967438753804807 126.06836950064098 63691.662971395344 0.07651583802662995 0.05651067848103357 112.06845621988563 -2.0494833894243856 0.2983617497201826 EGSGSSGTGEQKEDQKEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EGSGSSGTGEQKEDQKEEK 19 2 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;;; 109.65 0.00014127 1431870000.0 2485500.0 1316079.0 1258907.0 1011933.0 1403484.0 3575790.0 1707160.0 1606350.0 3707490.0 2032700.0 False True 2472118.344165013 1359883.8939284433 1436150.1629841954 1140043.614044173 1582209.368298596 3328604.053804257 1624578.1488154882 1726223.9938800198 2793828.767320753 1902971.345717975 1.2990833255202294 0.714610809557603 0.7546882753730315 0.599086064332747 0.8314415095418275 1.7491614160634683 0.8537060489487027 0.9071203293545811 1.4681402185100507 1.0 20.859822407498477 2.950682491112392 24.999845511213056 1.153167371413084 0.8126380519081255 0.24783282727235922 0.3038575723132284 570.8809390494071 289388.50537483953 0.09343837645591292 0.09910796609937193 892.652634602304 -2.950682491112392 -0.34052931950495835 EGSGSSGTGEQKEDQKEEKQ ddPTM_BT-474_Trastuzumab_2h_R1 4 EGSGSSGTGEQKEDQKEEKQ 20 3 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;;; 145.9 1.7076e-07 805280000.0 1289500.0 861790.0 859956.0 707790.0 928330.0 2122030.0 1115640.0 980950.0 2574870.0 1349730.0 False True 1282557.47527692 890474.1591869434 981030.3299284518 797396.1414286568 1046547.3228570013 1975339.0608213148 1061672.2310413271 1054153.4701631686 1940327.7899903124 1263589.0758380087 1.015011525346032 0.7047181526133276 0.7763839911941588 0.6310565330741135 0.8282339115372093 1.5632764627307938 0.840203711271585 0.8342533900620002 1.5355686647603317 1.0 20.269095938980875 2.972936220861259 24.92073129422017 1.1028678221016177 0.7701188648515238 0.33400689155205543 0.2519050068779575 914.6115230286589 842188.4519003972 0.07768935154707181 0.08262056848738929 939.5853158509117 -2.972936220861259 -0.3327489572500939 EGSLS(ph)PASVGSDTLSDLGISSLQDGLALHIR ddPTM_BT-474_Trastuzumab_2h_R1 7 EGSLSPASVGSDTLSDLGISSLQDGLALHIR 31 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 EGS(0.018)LS(0.982)PASVGSDTLSDLGISSLQDGLALHIR;EGS(0.02)LS(0.979)PASVGSDTLSDLGISSLQDGLALHIR;EGS(0.03)LS(0.969)PASVGSDTLSDLGISSLQDGLALHIR;EGS(0.048)LS(0.884)PAS(0.064)VGS(0.004)DTLSDLGISSLQDGLALHIR;EGS(0.015)LS(0.965)PAS(0.02)VGSDTLSDLGISSLQDGLALHIR;EGS(0.036)LS(0.954)PAS(0.01)VGSDTLSDLGISSLQDGLALHIR;EGS(0.125)LS(0.5)PAS(0.139)VGS(0.178)DT(0.046)LS(0.011)DLGISSLQDGLALHIR 296.61 1.4455e-81 2472244000.0 346231.0 422089.0 358906.0 408224.0 441830.0 385582.0 413317.0 336815.0 433779.0 418029.0 True False 344366.93076588033 436137.97720681113 409436.84513312386 459905.11654385005 498094.4315684167 358927.62390239723 393323.27768573054 361949.8456119151 326879.9777908037 391350.03132736747 0.8799460922434796 1.114444722867489 1.046216461883011 1.1751758776764623 1.2727594012935102 0.9171524087656233 1.0050421520388546 0.9248749626626225 0.8352624290896401 1.0 18.57810003480033 2.6790353668237445 24.999980627965904 0.9370413499361477 1.100081978295311 0.3788592526028359 0.10320594739223797 275.08457133870036 115532.20035457483 0.033864524004180274 0.03192778168457964 477.56816289539285 -2.6790353668237445 0.16304062835916333 EGSVIDHIHLISVGDMIEAINGQSLLGCR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGSVIDHIHLISVGDMIEAINGQSLLGCR 29 0 O14908;O14908-2;K7ESN1;K7EIT0 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 ; 265.64 1.1197e-58 459480000.0 298510.0 378390.0 352910.0 363970.0 373990.0 371100.0 381640.0 64413.0 408240.0 222030.0 False True 296902.855327579 390984.48240841436 402596.6604512903 410048.56468131545 421615.40968760056 345446.73047543626 363178.6151936218 69219.82514258655 307634.7221357369 207859.85531055328 1.4283799769031444 1.8810004549664654 1.936865874604744 1.9727164924111098 2.0283638178121772 1.661921345799655 1.7472282690229641 0.333011995217492 1.4800102774829458 1.0 17.66525162687632 1.8482023820019444 8.08394814489349 0.8870582308140147 1.8294223817774917 0.6285960566103869 0.30601173795357334 0.1588642433003505 10.507023908631295 0.12448873403546583 0.0776267205259371 70.50215337188156 -1.8482023820019444 0.942364150963477 EGTAPS(ph)ENGETK ddPTM_BT-474_Trastuzumab_2h_R1 5 EGTAPSENGETK 12 0 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 EGTAPS(1)ENGETK;EGTAPS(1)ENGETK;EGTAPS(1)ENGETK;EGTAPS(1)ENGETK;EGTAPS(1)ENGETK 246.63 1.541e-16 1734220000.0 3096190.0 2755751.0 2445429.0 2193369.0 2199582.0 3108712.0 2826363.0 3084269.0 4249950.0 2791959.0 True False 3079520.457059048 2847474.5061483425 2789724.147150091 2471049.290508808 2479685.729756066 2893814.0565609126 2689641.023934837 3314432.8143806434 3202606.768912344 2613773.786303639 1.1781893571647075 1.0894112264302718 1.0673165986163164 0.9453952378959811 0.9486994409194078 1.1071402091966431 1.029025938674857 1.2680641422561156 1.2252807743708471 1.0 21.317702855254726 1.7540674700990209 24.99999999999991 1.1896669818961145 1.0482112776819148 0.2201009787752355 0.0930909327467233 6.344244366445737 10240.803964150511 0.04307813229693246 0.023889184442011803 56.76327835156546 -1.7540674700990209 -0.14145570421419973 EGTETFADHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EGTETFADHR 10 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 ; 134.68 0.00016435 1112490000.0 436990.0 525980.0 513000.0 548600.0 554400.0 542360.0 495840.0 469490.0 621260.0 564270.0 False True 434637.29439415305 543486.9263383752 585225.9409240653 618052.7037507754 624999.5538137526 504867.9297781123 471854.3249072566 504525.7278219143 468158.79745749506 528257.8055041482 0.8227749592442889 1.0288289556264916 1.1078415402978266 1.1699830978567947 1.1831335898904094 0.9557226121747248 0.893227359805763 0.9550748187060198 0.8862316705584746 1.0 19.010882653925812 2.5086314577282938 20.678637054169556 0.9304282326187769 1.0691600498625133 0.28861800909954116 0.0978614575228277 102.04052109398197 66963.94856785929 0.03333003202261041 0.03135745025271531 322.57555839173773 -2.5086314577282938 0.1387318172437364 EGTGTEMPMIGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGTGTEMPMIGDR 13 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 131.37 0.00030533 384110000.0 109430.0 139400.0 126650.0 131300.0 156730.0 119330.0 143800.0 106910.0 164110.0 126970.0 False True 108840.84103881606 144039.84473092054 144481.21913846562 147922.56653750752 176688.6364885092 111080.99797260518 136843.84463065406 114888.1670779801 123667.28946133592 118866.66589551406 0.9156548660537775 1.2117766040273574 1.2154897931222133 1.2444411174747185 1.4864439509376135 0.9345008302853163 1.1512381843951294 0.9665297349129728 1.0403866258858618 1.0 16.858984667319017 2.6783494583697136 24.999980167386113 1.0233970839345983 1.2162877461496377 0.33307514662411475 0.13874230712120514 298.90576898416424 124106.69473442028 0.044755268676828726 0.04219567845459042 476.8145049151091 -2.6783494583697136 0.19289066221503948 EGTPGS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGTPGSPGR 9 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 EGT(0.006)PGS(0.994)PGR 103.18 0.0039681 0.0 175000.0 202060.0 178110.0 177210.0 174210.0 167450.0 195510.0 175230.0 208560.0 209410.0 True False 174057.81944432762 208785.44495215084 203186.33984012713 199644.76783024936 196394.61087643213 155874.57563490095 186052.43437927123 188306.55239991067 157163.18256082045 196045.27451507913 0.887845013734007 1.064985858335962 1.0364255927244945 1.0183605206709196 1.0017819167649773 0.795094786244958 0.9490278959259522 0.9605258421336076 0.8016677930624234 1.0 17.580827341918326 2.9551943280113155 24.920689024028196 0.9070340717703449 1.0090253609574942 0.30983508073380006 0.0745346514288818 511.06359582791833 284250.63794779166 0.02202731712027403 0.023364420563067246 901.9746419945951 -2.9551943280113155 0.10199128918714928 EGTQASEGYFSQS(ph)QEEEFAQSEELCAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGTQASEGYFSQSQEEEFAQSEELCAK 27 0 Q16643;Q16643-3;Q16643-2 Q16643 DBN1 Drebrin 1 EGTQASEGYFS(0.009)QS(0.991)QEEEFAQSEELCAK;EGTQASEGYFSQS(1)QEEEFAQSEELCAK 298.81 5.8387e-71 174735000.0 247140.0 203967.0 200721.0 222390.0 205950.0 260410.0 232220.0 224550.0 339540.0 281740.0 True False 245809.42569983506 210755.91829434485 228980.77210179213 250544.55119783976 232176.5117387129 242408.46963920328 220986.6314334524 241307.06124179627 255864.91660290063 263759.1119902509 0.9319466684772609 0.7990469663930885 0.8681435510377961 0.9498991307155312 0.8802596808382288 0.9190524938079229 0.8378350600513872 0.9148766820640324 0.970070435376496 1.0 18.008861409379186 1.246108880725044 2.6582472749062207 0.9966357331690643 0.8833003731018086 0.47823980650086584 0.04209344507855799 0.2217341963264686 2.6311583716196023 0.037545435255746946 0.010767324331577554 17.62417841755416 -1.246108880725044 -0.11333536006725564 EGTSDPPS(ph)PLLLPSPGGWK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGTSDPPSPLLLPSPGGWK 19 0 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 EGTSDPPS(1)PLLLPSPGGWK;EGTSDPPS(1)PLLLPSPGGWK;EGTSDPPS(1)PLLLPSPGGWK 161.24 3.1386999999999995e-11 206029000.0 602760.0 546500.0 523590.0 476520.0 464440.0 627940.0 608320.0 554530.0 644010.0 624370.0 True False 599514.8071329311 564689.9221337733 597306.9208741358 536847.3831413036 523583.68104844727 584531.9858117627 578893.2375919301 595911.8444462846 485302.36479187757 584522.1720499493 1.0256493864559524 0.9660710048916994 1.0218721366536871 0.9184380145214205 0.8957464850515634 1.0000167893747796 0.9903700240518195 1.0194854411705054 0.8302548440376474 1.0 19.15689822442869 3.753856138058292 24.82920956564815 0.9574217946914322 1.0006848576541663 0.1506790454422745 0.05685945885278992 1775.995476018084 2882962.3482065694 0.01482851522694042 0.026614953677524072 5673.56634916876 -3.753856138058292 0.04326306296273408 EGTTPKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGTTPKPK 8 1 P61927 P61927 RPL37 60S ribosomal protein L37 0 60.91 0.081447 1051300000.0 960930.0 978730.0 773410.0 670270.0 786960.0 772780.0 956540.0 1007100.0 1460000.0 1073800.0 False True 955756.4596493589 1011306.4363952219 882299.4053997684 755126.113275668 887174.691322639 719359.5375284493 910268.5058623485 1082254.9159501789 1100202.562997687 1005269.1646735681 0.950746818101909 1.0060056270835822 0.877674792388832 0.7511680849385978 0.8825245242757677 0.7155889813471404 0.90549729152185 1.0765822269119432 1.0944358005399935 1.0 19.939150409581785 1.8045012948926225 4.501597847992063 1.06370837801178 0.8631672646502886 0.5190959224600378 0.08293296632442179 0.1750679262658738 6.238879640675425 0.04372793760313569 0.0239034293828584 63.75309818947352 -1.8045012948926225 -0.20054111336149139 EGVHGGLINK ddPTM_BT-474_Trastuzumab_2h_R1 6 EGVHGGLINK 10 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 ;;;;; 154.05 1.5165e-05 24523400000.0 20484620.0 19373890.0 16833250.0 15444710.0 15667770.0 20879940.0 19953670.0 19204600.0 23703940.0 20371960.0 False True 20374333.081975214 20018738.216886163 19203225.282768097 17400008.702418197 17662967.63935156 19436558.89389188 18988434.751678307 20637744.77098285 17862421.60352288 19071804.071487553 1.0682960566082444 1.0496510000757757 1.0068908641672247 0.9123420436366217 0.92612988121862 1.0191253444633293 0.9956286610591871 1.0821076335319733 0.9365879356021327 1.0 24.184937984101534 -3.1338397149606756 9.608796313492817 1.0000942014074565 1.0027139334228867 0.0 0.05617530908657167 0.0 0.0 0.0 0.013221038028249874 0.0007347850051791497 3.1338397149606756 0.0026197320154301984 EGVHGGLINKK ddPTM_BT-474_Trastuzumab_2h_R1 3 EGVHGGLINKK 11 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 ;; 160.18 1.8035e-05 33271860000.0 41043100.0 37543900.0 33893200.0 32975300.0 31908000.0 42780800.0 46825200.0 41464200.0 56102400.0 43585100.0 False True 40822128.50991704 38793526.01573323 38665067.95502443 37149969.59896635 35971294.66646687 39823463.99117088 44560086.18636509 44558469.15494135 42276715.25364487 40803461.60291853 1.0004574834159947 0.9507410521503025 0.9475928373748284 0.9104612241111707 0.8815745834636238 0.9759824884152096 1.0920663207451464 1.0920266909843315 1.0361060947491025 1.0 25.282188214092645 2.378551964339829 4.735474886742125 1.0662596856418254 0.9370385392136096 0.6672160722211008 0.03859622754046704 0.11542900166332372 4.4139136537902885 0.014131067834673357 0.011706247215254364 239.0847988725706 -2.378551964339829 -0.1292211464282158 EGVKFDESEK ddPTM_BT-474_Trastuzumab_2h_R1 5 EGVKFDESEK 10 1 P14625 P14625 HSP90B1 Endoplasmin 0 ;;;; 143.79 3.0419e-05 4501980000.0 4578200.0 4452110.0 3879840.0 3800910.0 3823740.0 5511940.0 5632790.0 5340650.0 10442250.0 5639340.0 False True 4553551.479885844 4600295.789992677 4426087.747826176 4282104.816283915 4310670.623917384 5130912.561511117 5360310.42835258 5739196.422271196 7868897.406481229 5279432.493118118 0.8625077573814081 0.8713617980700172 0.8383643040413341 0.8110918781262483 0.8165026505285292 0.9718682014022151 1.0153194373334424 1.0870858619278478 1.4904816789945792 1.0 22.331951426300453 1.9508392180481235 1.404214536100533 1.2285697759612015 0.8460625245799214 0.6154398719620007 0.12001954356174134 0.2591842301039862 0.9496509614344316 0.08149509468435427 0.03705141730101965 89.297483063473 -1.9508392180481235 -0.38250725138128017 EGVKS(ph)PVCSSHSNGHCTGPGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGVKSPVCSSHSNGHCTGPGGK 22 1 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 EGVKS(1)PVCSSHSNGHCTGPGGK;EGVKS(1)PVCSSHSNGHCTGPGGK 238.71 8.7919e-31 343950000.0 145105.0 187805.0 197422.0 199315.0 233000.0 308660.0 288440.0 175243.0 375150.0 298470.0 True False 144323.77080268093 194055.97589448004 225217.30157721398 224548.25856377257 262671.1689008019 287323.06070748606 274487.0552521967 188320.52252592312 282699.30925245385 279421.3890669768 0.5165093885067145 0.6944922024131989 0.8060131056152964 0.8036187183578447 0.9400539084638224 1.0282786928620389 0.9823408872482652 0.6739660236990055 1.011731099743017 1.0 18.0920829344103 4.683406314930534 0.9257580631502955 0.9088101857945449 0.32739477134983597 0.6322952285975468 0.10080471575554141 1.461349289593648 1.0475187897466927 0.03587903518003542 0.8430049368325829 48239.89067825753 -4.683406314930534 -0.5814154144447089 EGVVECSFVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGVVECSFVK 10 0 P40926;G3XAL0;P40926-2 P40926 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase 0 114.4 0.0053881 0.0 212360.0 127950.0 132710.0 109530.0 108160.0 185700.0 146740.0 127080.0 200110.0 168140.0 False True 211216.67735541405 132208.73840259176 151394.41446400146 123396.48676963607 121933.53488545372 172862.99609077995 139641.62559876326 136563.35489916464 150795.57183662127 157409.16124810366 1.3418321759716423 0.8399049798264807 0.9617890932369436 0.7839218873362916 0.7746279436256298 1.0981762098224919 0.887125148825768 0.8675692940382137 0.9579847236396981 1.0 17.264159982897123 4.743409741424809 24.9498535869835 0.9009242302371933 1.3418323613297154 0.6516651866375331 0.09505335915728406 293.0991231900022 1508010.622887856 0.02209043167604829 0.1816895614506596 55387.242175097635 -4.743409741424809 0.44090813109252214 EGVVGPELHHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGVVGPELHHK 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 67.02199999999999 0.035338999999999995 136370000.0 365530.0 375140.0 359630.0 335610.0 318200.0 394800.0 430730.0 251200.0 516430.0 360150.0 False True 363562.0270942006 387626.3081230811 410262.7780400037 378098.1915891315 358720.8838808373 367508.4052592351 409893.94435161114 269945.8195677539 389162.74630746274 337164.91866007197 1.0782913849371798 1.149663819307026 1.2168014978261383 1.1214043059157297 1.0639330014119825 1.089995977991279 1.215707571180809 0.800634362081756 1.1542207530191322 1.0 18.36309490897282 1.757961185463242 24.999999999597684 0.9673424397121647 1.1326614813076652 0.3417477891276145 0.09363422903220082 8.100400350981163 10448.185486976894 0.04105608543760144 0.022768089582391047 57.274484033054726 -1.757961185463242 0.16531904159550048 EGWLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGWLFK 6 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 104.04 0.079497 645920000.0 479240.0 519840.0 524020.0 455930.0 476020.0 538550.0 534370.0 548320.0 602420.0 534380.0 False True 476659.8250885691 537142.5601500835 597797.4611365092 513650.6912524442 536638.3254084103 501321.3061103369 508520.4816083637 589238.4227125428 453961.663014429 500275.41089426505 0.9527948300247617 1.0736937064124674 1.1949367250889247 1.0267358340364365 1.0726857921102795 1.0020906388627062 1.0164810632994339 1.1778280720598526 0.9074234973950686 1.0 18.93236301840705 1.2175593468178851 24.999999898717505 0.9537117269805424 1.0691671003618286 0.2636024336719015 0.07386563201857636 359.16007931974417 427534.38502171385 0.07001752031074679 0.017579513860496703 16.502864993750478 -1.2175593468178851 0.1154553733812862 EGWLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EGWLHK 6 0 P31749;G3V4I6;C9JIF6;C9J258;J3KSY8;P31751;P31751-2;A8MX96;C9JHS6;J3QLS6;M0QZK3;E7EVP8;A0A1B0GXA2;J3KRI8;A0A5F9ZHJ8;A0A0A0MRF1;C9JIJ1;C9JC83 P31749;P31751 AKT1;AKT2 RAC-alpha serine/threonine-protein kinase;RAC-beta serine/threonine-protein kinase 0 92.76 0.046389 112900000.0 246770.0 247920.0 226560.0 199200.0 236210.0 281390.0 251370.0 229870.0 311270.0 260100.0 False True 245441.41773872465 256171.86732919514 258457.67870517776 224418.69957556375 266289.94337364077 261938.17162081067 239210.27277334846 247024.06665620848 234561.67930430808 243500.19531718694 1.007972159607548 1.0520396790462607 1.0614269872289301 0.9216366306533457 1.0935923194097137 1.0757205811667057 0.9823822624115338 1.0144717392708096 0.963291544792252 1.0 17.89356340396424 2.2068999965742857 24.99576931122795 0.9934147781554774 1.0348118880461665 0.18760331980950662 0.04602034721595228 379.27156487977004 299429.44590160943 0.017317989872661314 0.012791450128590802 161.02748003075774 -2.2068999965742857 0.04139710989068912 EGYAWAEDKEHCEEYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGYAWAEDKEHCEEYGR 17 1 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ;;; 256.45 2.5579000000000003e-27 6423150000.0 4149310.0 4056230.0 3677880.0 3572410.0 3480920.0 4694080.0 4417170.0 3930400.0 5937330.0 4650520.0 False True 4126970.5759916743 4191239.163507187 4195693.53529396 4024676.739712551 3924194.5289707226 4369589.298275763 4203494.611871952 4223706.406166804 4474154.577645929 4353719.8320895145 0.9479182710778579 0.9626800357283563 0.9637031543392374 0.9244225386411593 0.9013429160156485 1.003645036152598 0.9654949730319548 0.9701373926350442 1.027662493270407 1.0 22.053817140410214 2.7181010863689603 24.998474362777902 0.9874669802222891 0.9417225780976651 0.5484200506444618 0.023891686072753424 765.0420448097955 934765.4678045205 0.008190292218734137 0.007730054524813353 522.5177960705322 -2.7181010863689603 -0.04574440212462394 EGYENFFDK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGYENFFDK 9 0 X6RM59;Q9H0P0-3;Q9H0P0-2;Q9H0P0-1;Q9H0P0;B9A035 X6RM59 NT5C3A 5-nucleotidase;Cytosolic 5-nucleotidase 3A 0 ; 121.5 0.0014239 241600000.0 186819.0 230511.0 184765.0 184653.0 185661.0 239860.0 220849.0 197179.0 264950.0 223682.0 False True 185813.18726154225 238183.41928815807 210778.3059938304 208030.05086710118 209303.82785103752 223279.0427697063 210165.6901448909 211893.49823467404 199656.62264810756 209406.42325620493 0.8873327970183761 1.1374217446842354 1.006551292535793 0.9934272675703945 0.9995100656246734 1.0662473447460992 1.003625805153823 1.0118767845789822 0.9534407758057705 1.0 17.67594617008542 1.3764989702170847 6.022898078468377 0.9769576075154713 1.0176187098191105 0.05258784784049031 0.06001909266531285 0.5657590827363407 26.923068219559465 0.03811512273842785 0.013772756419600024 23.795726585955638 -1.3764989702170847 0.040661102303639174 EGYGGFR ddPTM_BT-474_Trastuzumab_2h_R1 4 EGYGGFR 7 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ;;; 148.07 0.0049053000000000005 1920740000.0 1630220.0 1839980.0 1750310.0 1777730.0 1673420.0 1714920.0 1716710.0 1565040.0 2023750.0 1727960.0 False True 1621443.0766544696 1901222.622008602 1996738.4340327508 2002790.4357252377 1886520.1178625722 1596371.616887457 1633666.178830945 1681831.2319120904 1525023.9293606624 1617680.1134190136 1.0023261479227206 1.1752772419204147 1.2343221737532437 1.2380633347171972 1.1661886068904919 0.986827744029986 1.009882093053703 1.0396562447426592 0.9427228020609589 1.0 20.625494920967007 2.743406549611848 23.27131323512593 1.0028461264917332 1.1720108711238006 0.6210687349007183 0.06509000978146656 107.32275903459275 515388.8016498123 0.020860671759893194 0.021455612807219682 553.8683511243577 -2.743406549611848 0.16916474463206743 EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK 34 0 Q09028-3;Q09028;Q09028-2;Q09028-4 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 ; 255.34 1.0344e-59 701070000.0 352950.0 465040.0 480910.0 434690.0 490100.0 619940.0 603050.0 399780.0 629570.0 589620.0 False True 351049.75641643174 480518.575277384 548617.9478553451 489721.7094302306 552511.3299497121 577085.0069817882 573878.1676252846 429613.6136417069 474420.90930579085 551989.946800921 0.635971286163732 0.8705205195533867 0.9938911950025205 0.887193167680737 1.0009445518923177 1.045462893529686 1.0396532961355867 0.7782997066007254 0.8594738220420779 1.0 19.074282466381323 4.701607776986641 2.994347412404453 0.9417511164898933 0.5986080420284327 0.5706062342262976 0.08174597904540727 0.2748554841859131 3.7804180528738414 0.02217853675910869 0.21513968377016746 50304.608913757154 -4.701607776986641 -0.34314307446146064 EGYSGVGLLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGYSGVGLLSR 11 0 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;H7C4A8;G3V5M0;G3V359 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;; 185.33 1.0506e-05 816440000.0 613182.0 712210.0 650720.0 621870.0 593670.0 699360.0 692810.0 617300.0 820760.0 693180.0 False True 609880.6962429249 735915.4793099633 742335.719840367 700598.6782382325 669270.3555422267 651014.8893163597 659296.1335087857 663366.0605858864 618494.6956205361 648940.6589387447 0.9398096541528203 1.1340258453114254 1.1439192622856416 1.0796036102653324 1.031327512498182 1.0031963328989235 1.0159575061716368 1.0222291536960135 0.953083594164066 1.0 19.307727034373183 3.101531380304353 3.0109168051540944 1.0040335734126613 1.0839229924812808 0.2882711115803671 0.0547613500133753 0.3168367930597188 5.777052379730355 0.016680879952576562 0.0204344243805912 1263.3723865185007 -3.101531380304353 0.07988941906861946 EGYTSFWNDCISSGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EGYTSFWNDCISSGLR 16 0 Q9H4A6;Q9H4A5 Q9H4A6;Q9H4A5 GOLPH3;GOLPH3L Golgi phosphoprotein 3;Golgi phosphoprotein 3-like 0 97.69 0.007064699999999998 0.0 31917.0 53556.0 47656.0 46405.0 45222.0 43490.0 44716.0 41743.0 40660.0 48850.0 False True 31745.162418312062 55338.57908471432 54365.55056662237 52279.86824198815 50980.753648206264 40483.63866444816 42552.91624829156 44858.07462665903 30639.887816086284 45732.35117741087 0.694151111871815 1.2100532262169885 1.1887766355095208 1.1431703574385954 1.1147634515976472 0.8852297689090766 0.9304773350317103 0.9808827552434329 0.6699827808376625 1.0 15.480927471989633 2.736909895612774 24.767301252629817 0.9026467062088767 1.0885969237142823 0.22988865946397907 0.15963928016221482 189.06793707611143 2836736.7999910293 0.0493828319616216 0.04884296691319941 545.6446428055506 -2.736909895612774 0.18595021750540563 EGYYYR ddPTM_BT-474_Trastuzumab_2h_R1 3 EGYYYR 6 0 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ;; 146.66 0.025569 1223900000.0 1179890.0 1544450.0 1416160.0 1394920.0 1292320.0 1202090.0 1219130.0 1216760.0 1710170.0 1302980.0 False True 1173537.6033381037 1595856.0846102582 1615543.018516616 1571516.7289756315 1456889.2918192435 1118992.3477154854 1160156.0243711348 1307560.8097820862 1288721.5186039403 1219822.700862697 0.9620558811605497 1.308268884881072 1.3244080614125748 1.2883156936366287 1.194345121458131 0.9173401568310695 0.9510857795568454 1.0719269356582215 1.0564826492346107 1.0 20.218240039100486 2.8617049900824716 5.5503686037770015 1.006123062284186 1.2348832482082637 0.5157212868104224 0.10433838641103708 0.1867968066886913 7.7233901819217925 0.03260348719043278 0.034721153814316695 727.2856021844846 -2.8617049900824716 0.22876018592407776 EHAIEEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHAIEEWK 8 0 P45984-3;P45984-2;P45984-4;P45984;J3KNK1 P45984-3 MAPK9 Mitogen-activated protein kinase 9 0 88.948 0.014253 151700000.0 299120.0 279820.0 280790.0 278610.0 285610.0 337260.0 331080.0 239270.0 426580.0 295670.0 False True 297509.5711553563 289133.6395452379 320322.791329568 313881.99743347283 321980.74055690144 313946.01002464443 315064.39555157855 257125.54238844154 321455.07487914624 276800.08746417746 1.074817475243244 1.0445576162711891 1.1572351521421507 1.1339663954192007 1.1632248512153058 1.1341976547072958 1.1382380635712521 0.9289214636600065 1.1613257706096205 1.0 18.078484873278917 1.776043672775924 24.999999999450857 1.0233285877519673 1.1219959316919708 0.2991996086686084 0.06341944975005612 51.511839089713874 34370.99082504744 0.028556667137449632 0.015852709929791042 59.70953276399267 -1.776043672775924 0.09866734394000343 EHAKS(ph)ESSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHAKSESSQR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 EHAKS(0.944)ES(0.05)S(0.007)QR;EHAKS(0.977)ES(0.021)S(0.003)QR 127.03 0.00022227 838870000.0 802980.0 863780.0 762410.0 810730.0 854110.0 753060.0 948620.0 632650.0 1353210.0 959390.0 True False 798656.8448994646 892530.3951339634 869750.7010134822 913368.3348739807 962875.8457934071 701002.7347125619 902731.6265196884 679861.5555316058 1019729.5275850012 898160.908824897 0.8892135440902033 0.9937310635147768 0.9683684654583942 1.0169317389564196 1.0720527205455639 0.7804868012233067 1.0050889742025975 0.7569485031597493 1.1353528277234395 1.0 19.776614406672604 2.7654858679077217 24.999676696827315 0.9129797255647121 0.9888846427464673 0.03335563774620465 0.11202181588414963 1778.4418298904432 1651253.0553251808 0.03246763457763658 0.03442786739391008 582.7548114452107 -2.7654858679077217 0.07590491718175518 EHALLAYTLGVK ddPTM_BT-474_Trastuzumab_2h_R1 6 EHALLAYTLGVK 12 0 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;P68104;Q5VTE0;A0A087WV01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;; 174.42 3.0421e-05 27734300000.0 10547370.0 12802340.0 11760970.0 11528970.0 10395680.0 11509520.0 12701500.0 8370570.0 15510440.0 11729610.0 False True 10490584.131842978 13228458.147722054 13416812.347816199 12988536.419908078 11719508.227977196 10713893.972895825 12087079.920558088 8995224.4382932 11688099.891247835 10981016.24757565 0.9553381850390261 1.2046661119040405 1.221818823078266 1.1828173392217356 1.0672516972702402 0.9756741754444814 1.10072507389529 0.8191613813775327 1.0643914577422005 1.0 23.38850824018427 2.934926652098507 2.6579799766958665 0.975115253334298 1.151163901614375 0.32804257366431233 0.09822735332198008 0.2857759547526892 3.988449125024661 0.03199193333852588 0.03575909683301921 860.8483514139675 -2.934926652098507 0.17604864828007705 EHAMLAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EHAMLAK 7 0 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ;; 78.49600000000002 0.035177 1292760000.0 1712260.0 1980580.0 1919650.0 1750080.0 1768440.0 1881140.0 2007840.0 1346990.0 2410380.0 1970870.0 False True 1703041.3824099686 2046502.4080141056 2189920.0341030825 1971639.9485602563 1993640.3516349108 1751101.2195272497 1910713.1085063433 1447509.2336766282 1816374.1464372387 1845087.3892533006 0.923013940873111 1.1091628613007414 1.1868923102820264 1.0685889243209077 1.0805126972558894 0.9490613993280358 1.035567810844776 0.7845206910564975 0.9844380038672954 1.0 20.815257717889864 2.501107915972053 1.586050701353506 0.9129236985829446 1.0838393842632794 0.29383221687224803 0.08933296047807435 0.3836805228472616 1.954894547375921 0.04097118006808818 0.03224452698853384 317.03551531211383 -2.501107915972053 0.17091568568033477 EHAPLAS(ph)PVENK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHAPLASPVENK 12 0 Q9ULJ3 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 EHAPLAS(1)PVENK 114.29 0.00010856 0.0 571100.0 498800.0 452100.0 392080.0 461850.0 540480.0 478260.0 334140.0 616170.0 470190.0 True False 568025.2610551751 515402.2564690331 515751.7502763543 441717.28779913223 520663.8599005808 503117.88975306804 455124.7366693781 359075.2235285404 464323.1597549892 440182.0716500888 1.2904325224465567 1.1708842537293036 1.171678229290396 1.0034876844104268 1.1828374971038549 1.1429767865534706 1.0339465552589966 0.815742499876228 1.054843415167737 1.0 18.747740860765244 2.0812015502543892 3.8334481040541584 0.9337760378880146 1.154910107442337 0.5207082277846931 0.08753853562939823 0.16258450664936402 4.65828015756509 0.036161724050785084 0.024874583320005878 120.55953112060119 -2.0812015502543892 0.22113406955432235 EHAPSIIFMDEIDSIGSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHAPSIIFMDEIDSIGSSR 19 0 P62195-2;P62195;J3QSA9;J3QQM1 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ;;; 355.49 6.0336e-91 1499560000.0 420982.0 532122.0 485752.0 523317.0 535973.0 524255.0 527733.0 353657.0 532826.0 520645.0 False True 418715.47968749714 549833.359095458 554141.659367927 589568.8785430999 604225.9845891393 488014.485813526 502204.5386541652 380048.68117385835 401518.1718026069 487416.9903533897 0.8590498238149593 1.128055381690357 1.1368944257896307 1.2095780208967428 1.2396489998246885 1.0012258404445504 1.0303385983530327 0.7797198060295629 0.8237672870440893 1.0 18.89479701575526 2.063485977300143 2.209793152763572 0.8499505647407913 1.1157907266699865 0.4259740167363115 0.11553157358446334 0.26103515589921206 2.4421126935842348 0.061130742158698924 0.03477890902551277 115.74066606106418 -2.063485977300143 0.26584016192919513 EHASGSGAQSEAAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHASGSGAQSEAAGR 15 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 231.17 6.0686e-13 13291000.0 25847.4 42374.7 49160.5 48796.1 50629.5 50033.7 47932.4 33822.8 33546.9 42050.4 False True 25708.240470316123 43785.11627345294 56081.87108927394 54973.681256823176 57076.86672044265 46574.98808566107 45613.72669245037 36346.82908469836 25279.71600042953 39366.70747084132 0.653045228366077 1.1122371944843066 1.424601514638059 1.3964510823655203 1.4498765679786438 1.1831060070278643 1.1586878767099378 0.9232885201694918 0.6421597747069414 1.0 15.264688433826253 1.6931412417385545 2.750750493030344 0.8105005920854197 1.2250669990318925 0.31965700279854237 0.22983844890544253 0.26884787366585317 4.535577363373705 0.15115787482595366 0.0658237897741042 49.33342205766761 -1.6931412417385545 0.41456640694647284 EHASIDAQSGAGVPNPSTSAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHASIDAQSGAGVPNPSTSASPK 23 0 Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 Q8IXJ6-5 SIRT2 NAD-dependent protein deacetylase sirtuin-2 1 EHASIDAQSGAGVPNPSTS(0.001)AS(0.998)PK;EHASIDAQSGAGVPNPSTSAS(1)PK 223.76 9.106499999999999e-33 889020000.0 411910.0 483610.0 543490.0 565540.0 585950.0 721570.0 747830.0 586010.0 850600.0 736390.0 True False 409692.3223275028 499706.666501581 620008.6679002345 637137.3060138775 660567.2593022528 671689.564293076 711654.6059119748 629741.0418984845 640981.0274560504 689392.9597448026 0.5942798175356498 0.7248502605633816 0.8993545105678877 0.9242004824791525 0.958186836643617 0.9743203129630452 1.0322916645035265 0.913471820384705 0.9297759984281343 1.0 19.394967040050723 4.4502502442509515 1.3305165332681916 0.963834775576525 0.5262008912431206 0.9328735793314169 0.03297281291235344 0.18872103907179033 0.43106781820578033 0.009730142724749334 0.09751764156792982 28200.0737594284 -4.4502502442509515 -0.43763388433340433 EHCPAGQPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHCPAGQPVK 10 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 94.692 0.0079306 114448000.0 166071.0 201383.0 193858.0 166307.0 153725.0 173411.0 195573.0 104734.0 261890.0 188905.0 False True 165176.89218822282 208085.91141640593 221151.5213560574 187361.44914815918 173300.96755053947 161423.50573558564 186112.38682858748 112549.78290847574 197350.71864620823 176848.92117029277 0.9339999989548671 1.1766309346950112 1.2505110005342042 1.0594435516388794 0.9799379402697239 0.912776310239102 1.052380673837273 0.6364176957579425 1.1159283151983366 1.0 17.43215789264434 3.168096645093063 2.1400202169293436 0.9067226218526855 1.1281378586462762 0.20809796524710633 0.1426146149081844 0.3760365795545062 3.53169958577449 0.045698628676548 0.05971782950380876 1472.640177819507 -3.168096645093063 0.22141523679359076 EHDPVGQMVNNPK ddPTM_BT-474_Trastuzumab_2h_R1 7 EHDPVGQMVNNPK 13 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ;;;;;; 188.29 1.5581e-06 4495820000.0 7598394.0 7352315.0 6561896.0 6478605.0 6734141.0 8705550.0 8324644.0 5248740.0 10252520.0 7719120.0 False True 7557485.090964944 7597032.360206722 7485753.919777507 7298795.728733671 7591693.939969162 8103755.819160427 7921949.166491706 5640427.631361679 7725923.822729487 7226479.15292888 1.0458045932232307 1.0512771433274886 1.0358784355924617 1.010007165906717 1.0505384128718147 1.121397522592449 1.0962391226550419 0.7805222310889284 1.0691131406084777 1.0 22.78486148540596 1.7791443621135834 24.99999999982721 0.9267879761529815 1.0577894942825457 0.29535669202811077 0.07452273464637743 57.96007254243374 35717.43304246635 0.03305822535461131 0.018371543279870006 60.137360448781806 -1.7791443621135834 0.13100151812956418 EHDQLIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EHDQLIEK 8 0 O14980 O14980 XPO1 Exportin-1 0 ;;; 124.74 0.0012917 3643830000.0 8126200.0 7720600.0 6996200.0 6857100.0 6433400.0 8269500.0 8646600.0 4279280.0 10461800.0 7387200.0 False True 8082449.4421056975 7977575.503798749 7981204.147939478 7725208.156925694 7252655.356250722 7697848.929309128 8228330.924780342 4598621.603343543 7883629.570937812 6915742.571499889 1.1687030508356202 1.1535385276882233 1.154063221038679 1.1170468069129196 1.0487167908966517 1.113090727383685 1.1897971677965131 0.6649497947327718 1.1399541682518133 1.0 22.721452737070614 1.773982615309258 24.999999999999865 0.900714308494502 1.1315895131272393 0.3718475744247097 0.11655568850028578 32.75940100632916 23131.07492274367 0.050571065772498175 0.0280628067749109 59.42683697372057 -1.773982615309258 0.23087520463273736 EHDYRDEHFDFIQSHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHDYRDEHFDFIQSHIR 17 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 ; 176.21 3.8095e-10 749500000.0 142636.0 170094.0 152705.0 173436.0 188334.0 186802.0 173593.0 29754.0 181386.0 120126.0 False True 141868.06362434954 175755.47596600585 174204.53666434588 195392.97981720648 212317.21855692542 173888.81742460895 165195.6434003415 31974.3945677506 136685.85074787572 112459.45583495715 1.26150409115043 1.5628341312974203 1.5490430339624297 1.7374526523048504 1.8879445661600673 1.5462356289523942 1.468935112426462 0.28431930717035897 1.2154233695428214 1.0 16.77904544558068 1.8969623479218802 7.249016550007772 0.773724994857201 1.5994722068885083 0.6186468281492519 0.2664140334786448 0.15103659477353257 9.323809092724343 0.11176663333238024 0.06932753158830685 78.87917286877702 -1.8969623479218802 0.8257472120313073 EHDYRDEHLDFIQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 7 EHDYRDEHLDFIQSHLR 17 1 O43237;O43237-2;B4E2E0 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 ;;;;;; 207.53 2.0154e-12 11270950000.0 2006180.0 2507686.0 2243871.0 2564346.0 2391880.0 2592211.0 2576772.0 484861.1 2838400.0 1725419.0 False True 1995378.9497875513 2591152.8125818023 2559788.532723632 2888991.9406716824 2696471.7402165243 2413017.554978335 2452123.69413505 521043.8973567776 2138914.352611392 1615301.2822144742 1.235298313545579 1.6041297317795096 1.5847127473422957 1.7885158468462676 1.6693305266989171 1.4938498356605294 1.5180596469120273 0.32256762443874243 1.324158146942766 1.0 20.62337184744367 1.8532303193407162 8.849198900477191 0.8230492178338755 1.5730280676224226 0.5704458459889536 0.26660144069779146 0.1933409290028602 13.686826079419053 0.1074094257239956 0.06757927714987613 71.32311776514474 -1.8532303193407162 0.7499788497885471 EHELLEQQKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHELLEQQKR 10 1 Q13435;H0YCG1;E9PJ04;E9PJT3 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;;; 174.98 1.9089e-06 1435770000.0 2071870.0 2034890.0 1777440.0 1693920.0 1679810.0 2225970.0 2039450.0 826960.0 2839810.0 1639060.0 False True 2060715.2821263985 2102620.0835330174 2027688.1022145653 1908370.0983184674 1893723.8464860755 2072093.9332697536 1940794.0120444172 888671.9544177926 2139976.8770044246 1534453.787530134 1.3429634042243386 1.3702726668083027 1.3214396671263358 1.243680398736668 1.234135470142913 1.3503788449732386 1.2648109886504506 0.5791454663800624 1.3946180030934292 1.0 20.549293766770777 1.9635055746842474 24.2681437564821 0.9388640219680084 1.3072221040856058 0.35736836133458094 0.1890881805179502 350.72112902392166 233222.63254408282 0.07348526987025188 0.04744277965890121 91.94022763458047 -1.9635055746842474 0.36835808211759735 EHEVFQR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHEVFQR 7 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 ;;; 183.9 0.00063596 3568860000.0 2454110.0 2564980.0 2272530.0 2553240.0 2375240.0 2520060.0 2425800.0 1174690.0 2818540.0 2152290.0 False True 2440897.344437252 2650353.808736849 2592482.470815137 2876479.922210405 2677712.734849529 2345854.1837831535 2308454.786544096 1262351.3327549542 2123948.5835010298 2014929.0095318235 1.211406125421959 1.3153584052833052 1.2866371264452192 1.4275837553595827 1.328936514478843 1.164236641929247 1.1456754930936621 0.6264991604087662 1.0541059131381196 1.0 20.942297579590782 2.061003628700205 2.86551944302234 0.8574756126901399 1.3018303721593103 0.6423315649304416 0.12888855135930596 0.14005490533303697 2.2635242011162546 0.058689971954440937 0.03629691154045769 115.08100043718179 -2.061003628700205 0.44435475946917036 EHEVTIFVR ddPTM_BT-474_Trastuzumab_2h_R1 7 EHEVTIFVR 9 0 P53396;P53396-2;P53396-3;K7EIE7 P53396 ACLY ATP-citrate synthase 0 ;;;;;; 176.38 5.3199e-05 6080350000.0 2353440.0 2699300.0 2371960.0 2320512.0 2378290.0 2593420.0 2537080.0 1267868.0 2805020.0 2219570.0 False True 2340769.3405317655 2789144.568738692 2705911.3505540867 2614288.581272544 2681151.13427076 2414142.979654014 2414351.747813213 1362482.7482632534 2113760.406342309 2077915.1423305192 1.1264990051068389 1.3422803039061941 1.302224183957401 1.2581305790670771 1.2903082900987344 1.1618101867944393 1.161910656806398 0.6556970111566437 1.017250590883893 1.0 20.986705308148267 1.9185861243530336 6.252639962981519 0.8614175970704321 1.2490496833658844 0.6732501888061588 0.11046221370575199 0.11946918580483212 7.406262336725045 0.04665371184185241 0.028579740092752142 82.90603098042364 -1.9185861243530336 0.3876320862954523 EHFGTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHFGTVK 7 0 E9PGT1;Q15631;H7C1D4;Q15631-2 E9PGT1 TSN Translin 0 ; 140.98 0.0025874 1147980000.0 1849470.0 1912340.0 1903960.0 1648570.0 1385770.0 1884970.0 1980520.0 1280780.0 2781500.0 1879040.0 False True 1839512.6590154364 1975991.0808660598 2172021.01848301 1857278.7929683079 1562239.5953976982 1754666.4606420987 1884714.6812788788 1376358.3072690603 2096036.595190456 1759118.0584729197 1.0457016515493605 1.1232850867220396 1.2347215742691704 1.0558011067094615 0.8880811540038815 0.9974694149665626 1.0713974950123522 0.7824138355238471 1.1915269615332202 1.0 20.746420877977098 3.4758575210377316 22.833203354433167 0.9707144975101002 1.1354110716338697 0.25383974401883425 0.10991427604781773 15.917391386416657 287581.8097670564 0.02964897357239585 0.040543190280185576 2991.2831255555343 -3.4758575210377316 0.16469657412376948 EHFQDDVFNEK ddPTM_BT-474_Trastuzumab_2h_R1 6 EHFQDDVFNEK 11 0 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ;;;;; 223.31 7.0331e-12 6724020000.0 12459250.0 12141680.0 11296460.0 10202140.0 10380150.0 13762900.0 12804040.0 8672890.0 16868000.0 12041040.0 False True 12392170.782352794 12545808.478999449 12886903.377409503 11493729.877951032 11702000.57453072 12811503.11738177 12184659.669017244 9320105.091843057 12711107.419619862 11272570.518347017 1.0993207593763585 1.1129500994099024 1.1432089385854831 1.0196192482667603 1.0380951314950544 1.1365201128287479 1.0809122594696328 0.826795013317844 1.1276139190197576 1.0 23.426313199350094 1.9569705494787715 24.994883126417424 0.9626318296034035 1.090852057013168 0.26637830477747404 0.07766039765880446 485.8463743165992 282216.9350938112 0.03092089441529955 0.01996067373409907 90.56711831415882 -1.9569705494787715 0.12822022740976435 EHFQSYDLDHMEK ddPTM_BT-474_Trastuzumab_2h_R1 5 EHFQSYDLDHMEK 13 0 Q13564-2;Q13564;Q13564-4;Q13564-3;H3BMR3;J3QRA5 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 ;;;; 198.78 7.120199999999999e-08 1768710000.0 1693330.0 1817560.0 1658170.0 1627330.0 1582800.0 1949080.0 1961260.0 891742.0 2359180.0 1617260.0 False True 1684213.299426651 1878056.3858617775 1891625.9229279887 1833349.8111460942 1784360.1980093939 1814344.6872408043 1866386.3610592263 958288.3162141244 1777791.7003923862 1514045.0821940529 1.1123930979558427 1.2404230283157909 1.2493854675626772 1.2108951263784868 1.178538353312187 1.1983425781559802 1.232715183325046 0.6329324849597193 1.1741999768039466 1.0 20.52997673296319 1.7747294196366596 24.99999999917412 0.8987267763621549 1.2056025449478474 0.46207313326924193 0.1304431277028661 28.992126108534283 20048.137631126054 0.05582785921709521 0.0309838766855166 59.52911411613811 -1.7747294196366596 0.30687576858569243 EHGAFDAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHGAFDAVK 9 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 93.649 0.0067705 0.0 1005200.0 1122600.0 1134000.0 947480.0 942810.0 1149400.0 1222400.0 1027700.0 1733200.0 1186900.0 False True 999788.1148882192 1159965.0623739685 1293657.343095302 1067430.870852688 1062871.2650273165 1069944.6833965678 1163267.8419785223 1104392.1925548594 1306076.0836901304 1111151.0258437858 0.8997769804775189 1.0439310547304894 1.1642497851387255 0.960653273970658 0.9565497761388406 0.9629156239891632 1.0469034495964757 0.993917268551506 1.175426250179018 1.0 20.08362348814656 1.2946770893649315 24.999975783337003 1.0877177589795177 1.007381853874246 0.1543105856705378 0.07835649489714713 139.58016611200506 62182.61184221772 0.05159812695251191 0.01884171531261161 19.709567272646005 -1.2946770893649315 -0.08033590510527167 EHGAVAVER ddPTM_BT-474_Trastuzumab_2h_R1 2 EHGAVAVER 9 0 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 ; 106.29 0.0029596 871564000.0 327984.0 391977.0 370937.0 400848.0 370398.0 357589.0 381099.0 258489.0 405508.0 333877.0 False True 326218.170586448 405023.71748989983 423161.7053577978 451595.3157001289 417565.9897790521 332869.71410396294 362663.7854304422 277778.7617605459 305575.98692881264 312568.6840135193 1.0436687591273164 1.2957910955416814 1.353819902634568 1.4447874620753638 1.335917547520504 1.0649490212191748 1.160269099174235 0.8886967120114033 0.9776282863819965 1.0 18.253813717644626 2.328150367290747 1.5562457945264399 0.9596503127563757 1.3026688248172054 0.5932230855559832 0.11461970359481445 0.26205511226853323 1.2754312280639233 0.061886417186414897 0.04088016469713999 212.88760065479474 -2.328150367290747 0.3430185120608297 EHGLIFMETSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EHGLIFMETSAK 12 0 P61019;P61019-2;A0A3B3ITL1;Q8WUD1;H7C125;Q8WUD1-2 P61019 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B 0 ;; 182.08 1.7334e-05 1392750000.0 1440670.0 1522300.0 1466120.0 1320340.0 1402040.0 1750880.0 1517020.0 1123110.0 1970200.0 1497900.0 False True 1432913.592793486 1572968.835250219 1672536.952256511 1487494.9086224902 1580581.483457853 1629845.7867281917 1443635.9470208269 1206922.1712370238 1484670.6093274276 1402302.73958329 1.0218289905211855 1.1217041733211222 1.192707469681992 1.060751624192445 1.1271328500203464 1.1622638541036572 1.0294752383139603 0.8606716204488585 1.0587375802807133 1.0 20.419366412072495 2.012016787311134 6.92798116947243 0.9543237698448189 1.115177882960856 0.48927907618556243 0.06470686195244331 0.09987133509354036 23.985472067065647 0.02452072215294265 0.017353822942882 102.8056036054794 -2.012016787311134 0.16085411311603715 EHGTVLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHGTVLLR 8 0 O75382;O75382-3;O75382-4;E9PMK8 O75382 TRIM3 Tripartite motif-containing protein 3 0 138.54 0.00070074 216720000.0 107850.0 126890.0 130940.0 127680.0 117980.0 144410.0 116420.0 120390.0 164510.0 131510.0 False True 107269.34758326158 131113.45694337517 149375.21384911725 143844.27490867453 133004.05367775363 134427.2766045747 110788.31983241126 129374.1131280329 123968.71482106132 123116.91920862437 0.8712803103973977 1.064950762138553 1.2132793348735247 1.168355054961432 1.0803068703528496 1.091866800019457 0.8998626715527049 1.0508231846575495 1.0069185910264176 1.0 16.909669510679112 2.352110788343769 24.09074744408785 0.9963243769007571 1.0907812980695182 0.1933295121579358 0.09076518335787147 9.890378836793348 2049.238675085521 0.032762044372608455 0.027410676127947255 224.9628411926746 -2.352110788343769 0.09445692116876103 EHGVGGVSQCPEPGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EHGVGGVSQCPEPGLR 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ;; 162.41 8.088999999999999e-09 1733470000.0 375410.0 477460.0 427550.0 510510.0 506600.0 516920.0 472310.0 334840.0 507960.0 498860.0 False True 373388.83427197195 493351.96746933484 487745.32366878074 575140.5136562304 571112.5071465495 481186.5370987941 449462.56090058567 359827.4610830683 382780.06431527785 467022.3277044666 0.7995095996957425 1.0563776894656944 1.044372602196929 1.231505389652765 1.2228805204104751 1.0303287627894542 0.9624005839502543 0.7704716450104466 0.8196183385850933 1.0 18.83313199931498 2.078777487743834 2.9501374164865664 0.8418055543520048 1.0788349290855301 0.33275723795209533 0.12542761208233438 0.2670350576716058 4.598052756100392 0.05942213683010598 0.037790220716696826 119.88848930092506 -2.078777487743834 0.23702937473352537 EHGVLGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EHGVLGGK 8 0 O95865;A0A140T971;Q5SSV3;Q5SRR8 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 ;;; 92.439 0.011777 2340200000.0 5725400.0 6027400.0 5640320.0 5313050.0 5130160.0 6312200.0 6419300.0 4349590.0 8103900.0 6111900.0 False True 5694575.082551734 6228018.365359762 6434428.029459695 5985681.585240713 5783455.467159386 5875852.471320521 6108773.934892611 4674178.492570488 6106802.431696549 5721833.309339152 0.995236102606672 1.0884655369450238 1.1245395805147713 1.0461125414945083 1.0107696527474253 1.026917799532884 1.067625288021218 0.8169022479108774 1.0672807300640954 1.0 22.44804603844758 1.818596310377597 24.9999999999921 0.9411695585038461 1.052915746810068 0.25016121387230417 0.06873358138480994 104.1808650280233 32546.860179003645 0.02756718719413917 0.01777028896759944 65.85614582100885 -1.818596310377597 0.11174618830622196 EHGVPILISEIHPGQPADR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHGVPILISEIHPGQPADR 19 0 Q9HD26-2;Q9HD26;A0A0J9YVX5 Q9HD26-2 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein 0 103.17 0.00021855 198920000.0 177640.0 209190.0 213900.0 211510.0 214170.0 220600.0 225700.0 134130.0 249560.0 213170.0 False True 176683.60597765935 216152.7626919748 244015.26074787084 238287.14431339136 241443.28001495588 205350.44123654297 214782.02874227145 144139.46169833935 188059.2819326731 199565.30809598105 0.885342285507275 1.0831179264284554 1.2227338663016096 1.1940308993925288 1.2098459512754272 1.0289886714066534 1.0762493280594236 0.7222671268546104 0.942344557412884 1.0 17.606501422627513 1.88719304553194 6.95581040975323 0.863670924285414 1.1120375445027137 0.41134445332122627 0.11512316090865526 0.21680164325151957 11.862837106329147 0.05086050279360841 0.031374737827492824 77.1246214728423 -1.88719304553194 0.24836662021729972 EHHFGSSGMTLHER ddPTM_BT-474_Trastuzumab_2h_R1 5 EHHFGSSGMTLHER 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;;; 130.61 2.1223000000000007e-05 1588180000.0 273626.0 404346.0 458769.0 497711.0 420014.0 424526.0 406135.0 70854.2 364053.0 235616.0 False True 272152.82801870647 417804.412177681 523359.68750836735 560721.1615685413 473500.2932819804 395179.51684671233 386488.698463635 76141.70019433739 274337.0162102716 220578.7851589937 1.233812344294752 1.8941278141346485 2.3726655631507283 2.5420448352019536 2.1466266256778965 1.7915572277808403 1.7521571631879875 0.34519049571995003 1.2437144216409064 1.0 17.75093451641912 1.903334620275456 5.1845461311614525 0.822933805828126 2.0219649293604993 0.6249997354725808 0.39281862363905196 0.14182472571002827 5.802717051713713 0.18625793257864615 0.110746811805167 80.04507581031038 -1.903334620275456 1.1990311235323734 EHIEDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHIEDFK 7 0 A0A669KBJ7;Q9H2P0;A0A2R8YCL6 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 0 117.02 0.0053251 348230000.0 1205400.0 1036900.0 961450.0 876810.0 848400.0 1290400.0 1205500.0 851290.0 1559300.0 1095700.0 False True 1198910.2603325313 1071412.5896807138 1096813.8029267893 987814.0560986454 956438.7111392275 1201197.6852748645 1147185.3595427924 914817.5825630305 1175031.408549516 1025771.4879240345 1.1687888330361926 1.0444944144909392 1.0692574475300838 0.9629962108790842 0.932409140241241 1.171018788702988 1.1183634689091198 0.8918337011047622 1.1455099136431985 1.0 19.96827794553536 4.985178272311004 1.7133524240264726 1.0278468779557013 1.3023802741611725 0.16423440165988 0.08762276862728917 3.5607432960734053 6.0868715990561135 0.023102527772134184 1.9528745814594768 96644.75118779458 -4.985178272311004 0.27453339620547124 EHIEELLR ddPTM_BT-474_Trastuzumab_2h_R1 5 EHIEELLR 8 0 P61201;P61201-2;B4DIH5;H0YMC2 P61201 COPS2 COP9 signalosome complex subunit 2 0 ;;;; 172.21 0.00028488 1929070000.0 1488130.0 1882860.0 1711730.0 1794720.0 1678310.0 1715850.0 1772230.0 1088760.0 2045480.0 1679170.0 False True 1480118.0734267842 1945529.8568870942 1952726.7053761233 2021931.3679832106 1892032.8303772712 1597237.32817644 1686500.4643239516 1170008.7998112568 1541398.8620277476 1572003.9329902353 0.9415485816319381 1.2376113163955926 1.2421894528353277 1.2862126649626964 1.203580214190866 1.0160517379483944 1.072834761371063 0.7442785448924983 0.9805311740510271 1.0 20.584173396398054 2.324082159590709 1.7607326803947292 0.8931744258861118 1.191661884147204 0.4625981311671924 0.11836186005103949 0.2702364269409037 1.6990012558568337 0.05737548127010434 0.03923115729230176 210.9027096779527 -2.324082159590709 0.29848745826109213 EHIKNPDWR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHIKNPDWR 9 1 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ;;; 130.94 0.00020855 2697490000.0 3471180.0 4032550.0 3686830.0 3610440.0 3368330.0 3927840.0 3802210.0 1957510.0 5376000.0 3619770.0 False True 3452491.5525643528 4166770.989022044 4205903.617499172 4067521.333813243 3797266.8598439405 3656317.6659408105 3618282.576447282 2103589.33623437 4051156.8347092955 3388753.1795589873 1.0188087976987632 1.229588219689788 1.2411360151188493 1.2003002633383264 1.1205498478759428 1.0789566168453273 1.0677326983484132 0.6207561379575396 1.1954712013686737 1.0 21.692323131022523 1.9820891987015439 19.46437842547685 0.8835138814547615 1.1502624774950478 0.2632509663886854 0.14840141727657144 40.58189393157477 44100.706362252175 0.05854502034690325 0.038877440792696234 95.95977007466436 -1.9820891987015439 0.26674859604028633 EHIMQMLQNPDWK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHIMQMLQNPDWK 13 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 140.31 3.9294e-05 443130000.0 455590.0 465670.0 381330.0 408360.0 379170.0 501980.0 438320.0 318000.0 639910.0 438880.0 False True 453137.15406080784 481169.5444465411 435017.9494202223 460058.3341299053 427455.0519833342 467279.3041338172 417116.78705499554 341730.77477128117 482212.7548546916 410870.30265592766 1.1028715171957206 1.1710983766317218 1.0587719448405022 1.11971668712978 1.0403649259150642 1.1372915032146476 1.0152030564357892 0.8317242024120065 1.1736374026976288 1.0 18.64832353198216 2.068609616197497 5.936031172832434 0.9688615888446912 1.10264498238495 0.218757276311508 0.0859143207753909 0.22106533219324528 14.14545510181121 0.03189569069743994 0.02325757710690462 117.11421620294514 -2.068609616197497 0.1337833935402588 EHINLGCDMDFDIAGPSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHINLGCDMDFDIAGPSIR 19 0 P21796;C9JI87 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 0 206.28 3.7172e-16 553110000.0 60569.0 77029.0 76821.0 62574.0 85054.0 122430.0 68476.0 34807.0 80235.0 74413.0 False True 60242.90323384855 79592.8636999861 87636.72905989784 70495.86198414328 95885.12274544539 113966.70226922019 65163.55427627728 37404.47508636467 60462.15934391735 69663.89863182558 0.8647650277546611 1.1425266926365292 1.2579934626263003 1.0119425321961184 1.376396162554715 1.635950679010019 0.935399188906543 0.5369276744623166 0.8679123696975457 1.0 16.088123592919302 2.00700790001343 24.988059538639604 0.7466614652595343 1.2178722211231992 0.41358026748502685 0.22297270784663703 143.23160645365516 510718.2600658477 0.08529167127622621 0.06285522315778036 101.62671790630766 -2.00700790001343 0.4712107558636649 EHIYDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHIYDLR 7 0 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ;;; 139.68 0.0026756 4235020000.0 3144780.0 3818360.0 3306470.0 3443020.0 3123100.0 3406810.0 3023810.0 2103720.0 4002310.0 3239910.0 False True 3127848.8538979003 3945451.804352642 3771992.2356475526 3878905.9789792094 3520808.2729360266 3171305.24346812 2877536.758224049 2260710.2688737055 3015994.328706351 3033136.1699734987 1.031225991388718 1.3007829465127887 1.2435947561432792 1.2788433362729972 1.1607814735751836 1.045553204917875 0.9487001561981278 0.7453375457566278 0.9943484761954168 1.0 21.532378837261746 2.5030922316875643 1.9018194520071545 0.8809460053509831 1.219861665616951 0.6456569279154214 0.09742299887506226 0.181808039153952 1.3287646352271987 0.04025781738240129 0.033106312933009835 318.48738257328114 -2.5030922316875643 0.33891566026596787 EHKLDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHKLDGK 7 1 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 103.83 0.004979399999999999 619530000.0 1159800.0 1141600.0 1037900.0 1114700.0 1073700.0 1084600.0 1351800.0 963050.0 2184700.0 1312600.0 False True 1153555.7656658937 1179597.4658882257 1184027.2984114778 1255820.9057072331 1210429.3306815054 1009624.1548737737 1286408.2696225175 1034917.6812688111 1646309.9584801702 1228828.744226602 0.9387441261328213 0.9599364202947895 0.9635413429042782 1.0219657634210204 0.9850268691780345 0.8216150213097507 1.0468572416347202 0.8421984642946856 1.3397391346963665 1.0 20.22885243778442 1.2489273455602887 24.9999966907733 1.1698696289544979 0.9476663998925117 0.4369529365866113 0.10097579427658604 150.30435146529084 362473.83692812664 0.06263295499439016 0.022321492928837963 17.73892696182133 -1.2489273455602887 -0.2222032290619862 EHLAMLLSSVLEAKPLLGDQSHAGSELLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHLAMLLSSVLEAKPLLGDQSHAGSELLQR 30 1 Q12933-4;Q12933-3;Q12933;Q12933-2 Q12933-4 TRAF2 TNF receptor-associated factor 2 0 50.705 0.052704 67620000.0 32190.0 43963.0 27098.0 30607.0 27491.0 32156.0 28669.0 23002.0 44321.0 25247.0 False True 32016.6926166452 45426.28187880532 30913.162859961656 34481.84306179361 30991.815898077 29933.13140708197 27282.170943784586 24718.526041789326 33398.683420972935 23635.714844955837 1.3545895618840558 1.9219339113197953 1.3079004829235752 1.458887251262996 1.3112282028013655 1.2664364756232487 1.1542773773820068 1.0458125004441985 1.4130600085531426 1.0 14.528680878165078 3.292722538334904 0.8068550969174986 1.1372567343216702 1.6186328164748238 0.44352297016872844 0.1826477727466647 0.5674428519808725 0.7966351473030338 0.08824941187847554 0.1662918029789587 1962.1063276049554 -3.292722538334904 0.48137608215315364 EHLASK ddPTM_BT-474_Trastuzumab_2h_R1 3 EHLASK 6 0 Q96TA1;Q96TA1-2;Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q96TA1;Q9P0K7-3 FAM129B;RAI14 Niban-like protein 1;Ankycorbin 0 ;; 111.81 0.027528 913400000.0 3826700.0 3993800.0 3629460.0 3427430.0 3316350.0 2642680.0 4111400.0 2194380.0 4948300.0 3830900.0 False True 3806097.4723863397 4126731.218696921 4140456.420168148 3861342.286577689 3738667.5149535313 2459997.7517995853 3912515.87492678 2358135.778435858 3728857.7688229103 3586408.6822014973 1.061255927489554 1.150658384019902 1.154485388326283 1.076659864711075 1.0424544011137544 0.6859223166640142 1.09092862013849 0.6575200952804768 1.0397191450400938 1.0 21.774108466395646 2.955090457746398 8.721627145489034 0.8712763950960244 1.1098263098472942 0.36404492380859077 0.1343005111096791 0.3500933344938847 64.92882557385205 0.038119868507307204 0.04075956366839719 901.758942403458 -2.955090457746398 0.23854991475126985 EHLELFWSR ddPTM_BT-474_Trastuzumab_2h_R1 6 EHLELFWSR 9 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 209.6 8.1537e-06 8957230000.0 6302850.0 7622960.0 7575690.0 7152900.0 5519070.0 6342690.0 7441960.0 3235091.0 8151520.0 5909900.0 False True 6268916.155912465 7876685.615423376 8642281.302922087 8058456.406596646 6221890.850409218 5904234.769386263 7081963.963752039 3476509.9178792406 6142687.120771859 5532725.122280057 1.133061198118771 1.423653885081745 1.5620297614497376 1.4565076392726566 1.1245617146881055 1.0671476783854943 1.2800137016085005 0.6283539921185454 1.1102462141188816 1.0 22.399558818683378 2.6648712863014064 1.1379094525051774 0.9220400430984524 1.4017815650856627 0.4567158797002383 0.18811289701520095 0.38897411712794916 1.040776518059997 0.0995328972642843 0.0859062448917965 462.2440038790018 -2.6648712863014064 0.4797415219872102 EHLLVSIPLLINHLQAESIVVHTYAAHALER ddPTM_BT-474_Trastuzumab_2h_R1 2 EHLLVSIPLLINHLQAESIVVHTYAAHALER 31 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ; 154.8 1.4404e-09 12865800000.0 125769.0 179022.0 157879.0 178134.0 165276.0 166796.0 161248.0 32027.0 173928.0 110470.0 False True 125091.87367824961 184980.63904891594 180106.9908911318 200685.74613550934 186322.91893239875 155265.78511555074 153447.81821282138 34417.01736981074 131065.77491579583 103419.71002187468 1.2095554479101804 1.788640086205908 1.7415151410987009 1.940498054897481 1.8016190423758578 1.50131715784844 1.4837386237146195 0.33278972995119666 1.267319110526162 1.0 16.658151639209372 1.920112006468947 6.511570123243885 0.8110857298794065 1.6765539410488706 0.6056148987124135 0.28715159605724855 0.14477826826234547 9.732049251955543 0.12205765607685908 0.07513135706833261 83.19783143250228 -1.920112006468947 0.865468211169464 EHLMLEEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHLMLEEELR 10 0 P15924 P15924 DSP Desmoplakin 0 ; 152.07 0.002147 161030000.0 155768.0 179637.0 177086.0 177128.0 161984.0 181656.0 199599.0 123579.0 179758.0 172434.0 False True 154929.36239545164 185616.10895214038 202018.16954089477 199552.38663865678 182611.70224561126 169098.54829222788 189943.63382777394 132801.09250144704 135459.04953379315 161429.11449182514 0.9597361844123685 1.1498304350888333 1.2514357783404992 1.236161068384986 1.1312191287207911 1.0475096070776695 1.17663802112594 0.8226588674509031 0.839124032614655 1.0 17.300541273281738 1.7426016911332438 8.530397324991611 0.8764359442502364 1.1413276589125452 0.605565915921209 0.09173077410656512 0.07130319538520936 19.477269127707967 0.045109546558344676 0.024216269629126357 55.28428423168767 -1.7426016911332438 0.26489171466230876 EHLQNLENSAFTADR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHLQNLENSAFTADR 15 0 H0YLB7;H0YKU8;Q6JHV3;H0YMI4;Q9Y6I4-2;Q9Y6I4;H0YL81;H0YLG0 H0YLB7 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 0 133.71 3.9601e-05 92617000.0 71688.0 88246.0 69568.0 71371.0 74869.0 86090.0 81107.0 38680.0 84671.0 74019.0 False True 71302.03977328559 91183.21476416654 79362.56970410416 80406.56128216651 84403.12336667007 80138.80093406163 77183.54455117142 41566.49801306019 63804.96658327197 69295.04404914578 1.0289630485365793 1.3158692084746655 1.1452849304463713 1.1603508214114153 1.2180253945261836 1.1564867593882353 1.1138393172306942 0.5998480639334061 0.92077243703056 1.0 16.080464554691247 1.8940614276765333 6.91860986620683 0.8053224276712279 1.1743596327890253 0.611384693001283 0.11750984951437467 0.13657190880712225 7.771513354790484 0.047402272305989875 0.029247816073335507 78.35404608130791 -1.8940614276765333 0.3690372051177975 EHMDAINHDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 EHMDAINHDTK 11 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ;;; 180.18 3.9188e-06 1481200000.0 1907710.0 2029240.0 1755000.0 1742920.0 1770740.0 2254840.0 2182850.0 313278.0 2559080.0 1364240.0 False True 1897439.1013265068 2096782.0266985174 2002088.745266542 1963573.4932943846 1996233.243001742 2098968.2181224264 2077257.206203221 336656.3951534506 1928429.0239151497 1277173.035215373 1.4856554664157444 1.6417368429211565 1.5675939673506534 1.537437323802614 1.5630092305112848 1.6434485854678822 1.6264493133876163 0.2635949756774182 1.5099199331200677 1.0 20.284522568237612 1.772214331751037 24.99999999903793 0.85293931804432 1.5826625492600153 0.5196618813685996 0.28666152464724015 21.44042342284887 15934.772227790358 0.12183456185437869 0.06759345309901676 59.185365200659135 -1.772214331751037 0.7297232312156953 EHMGDILYK ddPTM_BT-474_Trastuzumab_2h_R1 4 EHMGDILYK 9 0 P38606;P38606-2 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 ;;; 127.4 0.00044656 1898320000.0 5974300.0 6395900.0 5507000.0 5499270.0 5584200.0 6804800.0 6424300.0 3751520.0 7895700.0 5949200.0 False True 5942135.032607124 6608783.665096812 6282337.732297915 6195477.018147147 6295314.769853469 6334400.192776202 6113532.065790763 4031477.472232562 5949910.531959471 5569516.962633627 1.066903121486733 1.186599073031955 1.127986102645286 1.1123903670126407 1.1303161139627158 1.1373338541338942 1.0976772504342802 0.7238468792320941 1.0682992029430807 1.0 22.4091207791459 1.9227172074182157 10.461697028580833 0.9022461044957802 1.1282055921454228 0.4975815406536358 0.08744327376955383 0.40178572949370867 52.960705880245 0.03410866901360768 0.021729107683604417 83.69840991170648 -1.9227172074182157 0.22595948764964258 EHMQPTHPIR ddPTM_BT-474_Trastuzumab_2h_R1 14 EHMQPTHPIR 10 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ;;;;;;;;;;;;; 124.42 0.00030517 9034424000.0 5304685.0 5814674.0 5514634.0 5680158.0 5442153.0 5636628.0 5527924.0 2857114.0 6363706.0 5411179.0 False True 5276125.165365911 6008211.909045341 6291046.533142003 6399265.42040028 6135178.926381994 5246981.173555091 5260517.197399613 3070326.3548109257 4795455.925591611 5065832.923476579 1.041511878710957 1.186026463920967 1.2418582744779085 1.2632207806823192 1.2110898679563133 1.03575882837332 1.0384308517205156 0.606085198858833 0.946627336122366 1.0 22.27236806555212 2.1939296296166657 2.1732931990649313 0.8149179892019325 1.188136740943553 0.551133023018491 0.12296963480278351 0.19206862888087547 1.8227203614327947 0.05808152119285535 0.0374159839961216 156.28943804143236 -2.1939296296166657 0.37321875174162056 EHNFFHLDPANVVMFEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHNFFHLDPANVVMFEQR 18 0 Q3KQV9;Q3KQV9-2 Q3KQV9 UAP1L1 UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 0 ; 124.22 1.8678e-05 254284000.0 186393.0 229710.0 188523.0 212481.0 218023.0 226900.0 221765.0 12366.2 206022.0 110514.0 False True 185389.4807982089 237355.75848737283 215065.3997287087 239381.07281383226 245786.93672643538 211214.93706514797 211037.3797254312 13289.028638291244 155250.63865336258 103460.9019042044 1.7918796123569762 2.294158992612912 2.0787118203148873 2.3137346418599547 2.3756504360846598 2.041495223584212 2.039779045429481 0.12844493324246975 1.500573026099375 1.0 16.658726147613944 1.762169460560826 24.999999999999996 0.8099573566710399 2.1503845603215734 0.7282010664734366 0.3511947453138325 5.6466005637985575 5983.735920363047 0.14965108788116033 0.08299237722914224 57.83216629723776 -1.762169460560826 1.3404272036505336 EHNFQPGDNVEVCEGELINLQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHNFQPGDNVEVCEGELINLQGK 23 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 0 176.54 1.6272000000000002e-19 0.0 89890.0 88669.0 63435.0 87575.0 87992.0 99273.0 76673.0 61983.0 119890.0 92451.0 False True 89406.04222771783 91620.2940634575 72366.09661309568 98661.98602073298 99197.25963055523 92410.49117350572 72964.03407069632 66608.48620329647 90344.71594369372 86550.69802871683 1.0329904236942564 1.058573716332809 0.8361122239486178 1.1399328748105269 1.1461173842600596 1.0677035919784803 0.8430207465974155 0.7695892433033448 1.0438357864395047 1.0 16.401257834479402 2.2417952526875933 24.997359613924576 0.8796300471862213 1.04659214440493 0.2405559936984053 0.10890156581054102 96.64552647344003 746885.890822694 0.03994652786370062 0.03212957323069608 174.49992823528265 -2.2417952526875933 0.1669620972187087 EHNGHITGIDWAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHNGHITGIDWAPK 14 0 A0A1W2PNV4;E9PF58;Q92747 A0A1W2PNV4;Q92747 ARPC1A Actin-related protein 2/3 complex subunit 1A 0 69.714 0.026735 307450000.0 170810.0 236140.0 223580.0 239490.0 242000.0 259240.0 258930.0 49143.0 307830.0 179140.0 False True 169890.3779387752 243999.7771503555 255058.12060780218 269809.4094445372 272817.2655536224 241319.34898531935 246404.5666913441 52810.30020309766 231969.42121066968 167707.13183053007 1.0130182067060292 1.4549159268725675 1.520854347837403 1.608812973542369 1.626748144672269 1.4389331351106478 1.469255147362121 0.31489597148714615 1.3831816135587924 1.0 17.35558451597927 1.7772052551317792 24.99999999986936 0.8301427917854386 1.4633801684081313 0.41834442087084844 0.29237912485267187 39.913400697258766 25831.100777703916 0.12893578010596918 0.07160032914299139 59.86944816398086 -1.7772052551317792 0.6332373766226927 EHNGQVTGIDWAPESNR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHNGQVTGIDWAPESNR 17 0 A0A1W2PNV4;C9JEY1;C9K057;O15143;F8VXW2;C9JBJ7;C9JTT6 A0A1W2PNV4;C9JEY1 ARPC1B Actin-related protein 2/3 complex subunit 1B 0 ;;; 173.98 1.4096e-09 4075750000.0 2060360.0 2254450.0 2185610.0 2385450.0 2300320.0 2412740.0 2466470.0 1497880.0 2646240.0 2215080.0 False True 2049267.2506875172 2329488.005406196 2493324.8903373214 2687447.7254143003 2593252.1169351623 2245952.9627790437 2347157.423269608 1609659.411680522 1994109.6097993162 2073711.6979746004 0.9882122248184461 1.1233422696517616 1.2023488572555956 1.2959601510851955 1.2505364749921595 1.0830594074251845 1.1318629419711925 0.7762214068873124 0.9616137150342394 1.0 20.983783903777205 1.8464314108929316 6.647843549753223 0.8955429134001938 1.1628059410369231 0.5600903945008 0.09756253608822721 0.1661285086977969 8.72684327245718 0.04464601047531811 0.027154416757787143 70.21524424596235 -1.8464314108929316 0.2672630276367294 EHNKEPDSSVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHNKEPDSSVSK 12 1 Q8WXA9-2;Q8WXA9 Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 0 117.92 0.00040977 126490000.0 498730.0 457130.0 393110.0 381080.0 411940.0 556030.0 524700.0 317780.0 706620.0 476090.0 False True 496044.89309411217 472345.2957090792 448456.4710266271 429324.68892698735 464398.1172403275 517592.95485383115 499318.2564513501 341494.3572541433 532482.9692228942 445705.528598844 1.1129431009157975 1.0597698825814033 1.0061721074818866 0.9632473940286251 1.0419393241547779 1.1612890611453224 1.120287329665951 0.7661882910173733 1.1946968010400292 1.0 18.76573133090604 EHNSMWASLS(ph)SPDAEAVEPDFSSIER ddPTM_BT-474_Trastuzumab_2h_R1 1 EHNSMWASLSSPDAEAVEPDFSSIER 26 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 EHNS(0.002)MWAS(0.053)LS(0.533)S(0.412)PDAEAVEPDFSSIER 118.05 0.00042907 64556000.0 21442.0 21323.0 20726.0 33038.0 30793.0 29197.0 24907.0 17167.0 25614.0 32065.0 True False 21326.558654430166 22032.723164974308 23644.040646378515 37220.60741253756 34714.306025589634 27178.680112345213 23702.153256020178 18448.08871225969 19301.772910015585 30018.584247772378 0.7104451855024698 0.733969429841093 0.7876467607939603 1.239918815135315 1.1564271565593809 0.9053951341613351 0.789582648548093 0.6145555886310224 0.6429941116043116 1.0 14.87356831697168 -0.9881776584364328 4.666805304883879 1.0000022072400472 0.8413034656382355 0.054602018137981156 0.19678532686228967 6.983974410504412e-06 1.5140992302394359e-06 0.21588102179373708 0.05088267964972825 0.10275958497323244 0.9881776584364328 -0.15869874160181163 EHNSMWASLSS(ph)PDAEAVEPDFSSIER ddPTM_BT-474_Trastuzumab_2h_R1 5 EHNSMWASLSSPDAEAVEPDFSSIER 26 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 EHNSMWASLS(0.445)S(0.554)PDAEAVEPDFSSIER;EHNSMWASLS(0.003)S(0.997)PDAEAVEPDFSSIER;EHNSMWASLS(0.199)S(0.801)PDAEAVEPDFSSIER;EHNSMWASLS(0.074)S(0.926)PDAEAVEPDFSSIER;EHNSMWAS(0.001)LS(0.251)S(0.748)PDAEAVEPDFSSIER 239.79 3.0469e-45 1328579000.0 203441.0 439126.0 504253.0 566490.0 589506.0 516311.0 505037.0 267594.0 349604.0 471777.0 True False 202345.6962604199 453742.04345272697 575247.4393543531 638207.575916472 664576.0948241889 480619.6358353616 480606.4308813046 287563.22309479944 263448.77865359164 441667.7879513897 0.45814003597357716 1.0273378675799336 1.3024437259111714 1.4449946166024534 1.5046967719940052 1.088192639233765 1.0881627413004828 0.6510848899092657 0.5964862863908631 1.0 18.752602090927585 1.8323715996522174 4.218315985803534 0.7178088365866747 1.1648604564597023 0.2624774017580701 0.2894619949171102 0.28495796179391886 8.181436489289329 0.15014495819838047 0.08275761441451164 67.97850349910156 -1.8323715996522174 0.44705161987302755 EHNSMWASLSSPDAEAVEPDFSSIER ddPTM_BT-474_Trastuzumab_2h_R1 1 EHNSMWASLSSPDAEAVEPDFSSIER 26 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 130.78 6.8747e-05 137020000.0 38125.0 49134.0 57509.0 51410.0 59117.0 52711.0 50940.0 35262.0 47087.0 53754.0 False True 37919.7392360857 50769.3954878698 65605.76732281108 57918.500728813946 66645.19953608893 49067.21263834734 48475.8375903026 37893.42949680789 35483.039783474036 50323.37369888527 0.753521404645525 1.0088631138216875 1.3036838053698363 1.1509264278538804 1.3243388635838858 0.975038218461777 0.9632867200113098 0.7529985911426936 0.7051005760422623 1.0 15.618941023855234 2.1469401598568703 2.1863586602880387 0.8011588600181901 1.1137598266143123 0.33018545522197496 0.16982749255858162 0.332706929108875 3.147940489800001 0.08677823192716044 0.0534599026356445 140.26204283556228 -2.1469401598568703 0.31260096659612213 EHPDAWTR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHPDAWTR 8 0 O14980;C9JKM9;C9J673;C9IYM2;F8WF71;C9IZS4;C9JQ02;C9JV99;H7BZC5 O14980 XPO1 Exportin-1 0 ;;; 128.38 0.0011359000000000002 3688720000.0 5089600.0 5898600.0 5463400.0 5460000.0 5401300.0 5449800.0 5974100.0 4702100.0 6395500.0 5773000.0 False True 5062198.159107722 6094931.335220999 6232599.231275904 6151235.440173585 6089123.538986699 5073068.153449285 5685109.95972177 5052994.578779997 4819414.720309387 5404562.1974860355 0.9366527711462798 1.1277382168080317 1.153210751127082 1.138156101346168 1.1266636068725586 0.9386640338433061 1.0519094335460202 0.9349498431400102 0.8917308274389305 1.0 22.365746324916394 2.739359768581692 24.997510524248188 0.9648333959052776 1.103687192617171 0.4761133013972427 0.06956172219546652 62.534430426967845 1956097.3147962901 0.022002153261216687 0.0221198728501211 548.7313445151909 -2.739359768581692 0.13885379671189335 EHPFLVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EHPFLVK 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;; 108.09 0.0073317999999999986 2463010000.0 4400720.0 4990030.0 4735170.0 4371040.0 4482470.0 5561990.0 4973320.0 4434080.0 6718790.0 5269000.0 False True 4377027.012485954 5156120.132013161 5401840.77716454 4924413.21582717 5053285.984818783 5177502.722816145 4732741.511672629 4764973.565402015 5063034.231673448 4932727.908982149 0.8873441011241866 1.0452877651378722 1.0951021172946047 0.9983143823644035 1.024440447164561 1.0496226060610963 0.9594572413075209 0.9659915676121796 1.026416685674882 1.0 22.233954279282088 2.233297809483369 24.999018712086578 0.9821645759574341 1.021067225801146 0.0575050569353357 0.05324255741508455 306.270815703567 1454815.4078023403 0.019548791885907985 0.014881669579635463 171.11883289003265 -2.233297809483369 0.038902649843711834 EHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQR 34 1 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 0 119.61 6.989100000000001e-07 110600000.0 80430.0 89135.0 81518.0 83614.0 75042.0 102610.0 94736.0 86095.0 118040.0 107130.0 False True 79996.97381661301 92101.80459175457 92995.02583284208 94199.52382686344 84598.1538912187 95516.81221795878 90153.25775333542 92519.84608155175 88950.62365496374 100292.87168139245 0.7976336949523704 0.9183285217352333 0.9272346506167062 0.9392444572343468 0.8435111336722684 0.9523788741576159 0.8988999541236762 0.922496729134112 0.8869087320337138 1.0 16.613859544441105 -4.999999999999999 0.14476829947379358 1.3236837230278802 0.8707703333549842 0.3479833159772676 0.043453353654848474 162.006045005751 1.4168437847437139 15.286163650517631 0.2327350331583726 1.0000000000000021e-05 4.999999999999999 -0.45291338967289596 EHPHS(ph)RS(ph)PS(ph)PEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHPHSRSPSPEPR 13 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 3 EHPHS(1)RS(1)PS(1)PEPR;EHPHS(1)RS(1)PS(1)PEPR 124.91 0.0009294 688140000.0 193109.0 241707.0 153018.0 220039.0 197398.0 251256.0 199978.0 52288.0 221760.0 139722.0 True False 192069.32260042673 249752.07138003287 174561.604343701 247895.91483889287 222535.465230388 233887.26411300525 190304.30014985334 56189.996073084054 167110.21943175828 130804.82233797754 1.4683657618077113 1.9093491120282686 1.3345196394416052 1.8951588359515656 1.7012787545048913 1.788063008171672 1.4548722038560566 0.42957128849499604 1.2775539650975078 1.0 16.997056203612566 1.9368370998509288 6.630090660099882 0.857215536377061 1.6830078558656547 0.6489514585217155 0.2560767407640261 0.12790700528397794 10.98654239053091 0.10265263118871196 0.06364446658883594 86.46435375407175 -1.9368370998509288 0.8257923194885937 EHPLLGPYVEDLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EHPLLGPYVEDLSK 14 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;H7C0K6;A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;O60333-3 A0A3B3ITW6;A0A087WWA3;O60333-3 KIF1A;KIF1B;KIF1Bbeta Kinesin-like protein KIF1A;Kinesin-like protein;Kinesin-like protein KIF1B 0 144.12 8.9401e-06 137500000.0 210670.0 171860.0 147160.0 160510.0 168010.0 181290.0 208780.0 177650.0 216940.0 172680.0 False True 209535.77612763763 177580.256208436 167878.84886234987 180830.549542539 189405.07762671125 168757.84901075653 198680.51378294814 190907.14508842165 163478.04384706728 161659.41456121407 1.2961557277463396 1.0984838506958303 1.038472453447991 1.1185896598311975 1.1716303571976068 1.043909811679137 1.2290067629047094 1.1809219129401993 1.011249757960521 1.0 17.30259800259534 1.2270794888318997 23.805677709751706 1.0056245653325884 1.1442965823743043 0.3617476816635101 0.07511641017832181 151.87575982510972 314889.96730485925 0.06912100010620599 0.01796192521928798 16.868617431020503 -1.2270794888318997 0.13867201704171594 EHPSLLPHSACFPDPSTASTSQSAAHSNDS(ph)PPPPSAAAPSSASPHASR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHPSLLPHSACFPDPSTASTSQSAAHSNDSPPPPSAAAPSSASPHASR 48 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 EHPS(0.001)LLPHS(0.001)ACFPDPS(0.015)T(0.015)AS(0.045)T(0.045)S(0.079)QS(0.079)AAHS(0.199)NDS(0.513)PPPPS(0.007)AAAPS(0.001)SASPHASR;EHPSLLPHSACFPDPS(0.001)T(0.001)ASTSQSAAHS(0.003)NDS(0.994)PPPPSAAAPSSASPHASR 155.48 3.5997e-16 714980000.0 31975.4 36358.0 37996.0 41373.0 46942.0 51763.0 47348.0 37260.0 44846.0 43287.0 True False 31803.2479992009 37568.15405112488 43345.50653284756 46610.81755793074 52919.785452967546 48184.745646995405 45057.59635307517 40040.530402446304 33794.304205612534 40524.38660013477 0.7847928288961475 0.9270505293965373 1.0696153642138881 1.1501918096343433 1.305875051858072 1.1890308451167317 1.1118637475668867 0.9880601228474398 0.8339251260992596 1.0 15.306502728015495 4.452897392138662 2.3177377236728365 1.0923854405433582 0.7816984302997309 0.3832747556802365 0.12053541290138353 0.39419117231578993 3.658477132413407 0.03412543164772658 0.19327332689773322 28372.48611436715 -4.452897392138662 -0.3106870102436273 EHPVIESHPDNALEDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EHPVIESHPDNALEDLR 17 0 Q13564-2;Q13564;Q13564-4;Q13564-3;H3BMR3;J3QRA5 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 ;; 250.41 1.5736e-21 1024616000.0 436994.0 511680.0 457420.0 430268.0 460717.0 490085.0 468941.0 345584.0 468127.0 459518.0 False True 434641.2728585977 528710.9594829088 521820.7600340864 484739.8846836281 519386.5790663972 456206.57748599886 446256.5323014159 371373.23291999515 352763.3734304234 430191.1678268468 1.010344482556978 1.2290139803514435 1.2129973813040271 1.12680110828946 1.2073390109102653 1.0604740673560813 1.03734471015694 0.8632748896171526 0.8200153787732147 1.0 18.71461837980399 2.1036100138493556 1.7470224302013686 0.8805247653690835 1.1599704662780423 0.6779630431580157 0.07632861491700417 0.18629736428034885 1.0892940470052437 0.04211333970265634 0.0230681586085437 126.94336718962235 -2.1036100138493556 0.2794457009089588 EHPWEVMPDLYFYR ddPTM_BT-474_Trastuzumab_2h_R1 6 EHPWEVMPDLYFYR 14 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 ;;;;; 167.89 3.5765e-06 2605600000.0 1535394.0 1633130.0 1427898.0 1345652.0 1353283.0 1460478.0 1474249.0 1306290.0 1609500.0 1506792.0 False True 1527127.6093023105 1687487.744802066 1628933.6268880917 1516011.4052271931 1525615.568513235 1359518.593455412 1402933.943691914 1403771.9930062164 1212860.291195053 1410627.2445304666 1.0825876327169772 1.1962676542262258 1.1547583766045078 1.0747073056367944 1.081515740198994 0.9637688473172327 0.9945461844237147 0.9951402813529722 0.8598021170353609 1.0 20.4279053782985 3.006439700085605 1.1023725114784064 0.9582475590796162 1.1501833483603752 0.7277674391214788 0.04846770713068952 0.24674197428016018 0.6425559544276404 0.02110391467229737 0.025947463047999247 1014.9384369676904 -3.006439700085605 0.19193578928075894 EHPWEVMPDLYFYRDPEEIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHPWEVMPDLYFYRDPEEIEK 21 1 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 ; 221.82 2.4996e-25 305330000.0 638660.0 544730.0 487880.0 413860.0 467650.0 585440.0 545550.0 531600.0 794730.0 597970.0 False True 635221.5255217964 562861.0087537612 556569.2632710191 466254.6335659783 527202.4555212877 544969.9107775241 519159.66229661606 571270.6914101035 598879.4403364053 559807.0426521271 1.1347151377595888 1.0054553906416857 0.9942162582203883 0.8328845442119889 0.9417574545393843 0.9734959892531702 0.9273903733633985 1.0204778573411053 1.069796188163639 1.0 19.094570111285808 -0.11240707836666841 11.955442758912639 0.9999999999994583 0.9830738172428205 0.0 0.07745724692529567 0.0 0.0 0.07646250593158249 0.018022385483579536 0.7719566657399091 0.11240707836666841 -0.01692618275663782 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK 29 2 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 ; 167.87 2.233e-12 5952300000.0 3038900.0 2434000.0 2242800.0 2221710.0 2140160.0 3285000.0 3201400.0 2853200.0 5295400.0 3155500.0 False True 3022538.900053529 2515014.2186159273 2558566.7452329304 2502978.2582029426 2412696.6902778503 3057915.6820582235 3046536.051464369 3066120.272256034 3990419.624724628 2954113.2884405293 1.0231628258404137 0.8513601114951141 0.8661031231417644 0.8472858058616499 0.8167244972353475 1.0351382575691574 1.0312861268338933 1.0379156020365872 1.3508011491431877 1.0 21.494293722961533 2.1674370270946857 1.283256783189894 1.1415645313213716 0.8797019065717758 0.5081915816088741 0.1045408901494029 0.36033439959873664 1.1323233344532604 0.06697803134933208 0.03601934457689202 147.04051904978962 -2.1674370270946857 -0.26186262474959576 EHPYLFSQCQAIHCR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHPYLFSQCQAIHCR 15 0 P09960-4;P09960;P09960-3;P09960-2 P09960-4 LTA4H Leukotriene A-4 hydrolase 0 ;;; 165.34 8.27e-07 1157130000.0 139187.0 240674.0 162546.0 207499.0 173034.0 171263.0 224625.0 193754.0 259300.0 176033.0 False True 138437.63265712932 248684.68859949466 185431.06392484036 233768.35212464805 195068.85424712993 159423.99191973734 213759.03059917013 208212.90734287637 195398.9894419867 164798.42323056638 0.8400422160802099 1.5090234707620023 1.1251992603436942 1.4185108543034246 1.183681557281727 0.9673878474959086 1.2970939066577347 1.2634399241282157 1.18568482399014 1.0 17.33034291350937 3.0257379856946693 24.97987999469964 1.169806355299975 1.2446713735768713 0.023301586062914104 0.19316559724741014 934.3063241375837 906780.0811672318 0.05311244959357874 0.06348009383394722 1061.0552185849351 -3.0257379856946693 0.0748650182768964 EHQEDPEMLIDLMYR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHQEDPEMLIDLMYR 15 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0;K7ESB7;Q96HP0 Q96N67-2;K7ESB7;Q96HP0 DOCK7;DOCK6 Dedicator of cytokinesis protein 7;Dedicator of cytokinesis protein 6 0 ;;; 141.0 4.8396e-06 119535000.0 155983.0 162675.0 161591.0 154985.0 158354.0 184204.0 165418.0 113678.0 205422.0 160819.0 False True 155143.2048593405 168089.53903588606 184341.60822584908 174606.08510902978 178519.4432623071 171470.41104957464 157416.09938187434 122161.22960518759 154798.50061377452 150555.39373592712 1.0304725789596112 1.1164630828883733 1.2244105219450503 1.159746461261211 1.1857392739806365 1.1389190834991425 1.0455693115716653 0.8114038731781164 1.0281830280042292 1.0 17.199934868827423 2.0137282549373205 4.510490646994878 0.9250071285606923 1.1458424307695934 0.5940391356444561 0.07200473250820386 0.11639236309921869 5.920029226043198 0.03023537241841826 0.02007883267573891 103.21153924224974 -2.0137282549373205 0.22083530220890102 EHQHEEIQNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHQHEEIQNVR 11 0 Q6DD88;F5H6I7 Q6DD88 ATL3 Atlastin-3 0 ; 178.67 4.304e-06 519000000.0 394290.0 542150.0 546400.0 445310.0 637180.0 686710.0 515630.0 31288.6 538560.0 278550.0 False True 392167.18644973723 560195.1350134037 623328.3706060605 501686.200341337 718321.096138253 639239.3540414621 490687.0070021152 33623.51421229152 405839.1043342706 260772.7005213472 1.5038659555455802 2.1482123469728207 2.3903129789271556 1.9238447864302741 2.7545870204287364 2.4513277377711287 1.8816655501941504 0.1289380143898117 1.5562944415688484 1.0 17.992433320677826 1.9214663780427543 6.593965788432005 0.8336194470709261 2.2116617636113305 0.6257373450500683 0.4495539880375869 0.14305170652821575 9.964007780104227 0.18980222988711995 0.11702149559423565 83.4576934985205 -1.9214663780427543 1.3780423165404043 EHQISPGDFPSLR ddPTM_BT-474_Trastuzumab_2h_R1 6 EHQISPGDFPSLR 13 0 A0A024R571;Q9H4M9;C9JC03;C9J2Z4 A0A024R571 EHD1 EH domain-containing protein 1 0 ;;;;; 151.56 3.9799e-05 3755400000.0 2455130.0 3008790.0 2737270.0 2990120.0 2837480.0 2966140.0 2911250.0 1786517.0 3174820.0 2649710.0 False True 2441911.8528705854 3108935.7562980363 3122653.823222643 3368668.8854160905 3198816.258938395 2761097.7233425207 2770421.7154450035 1919835.9702895118 2392428.151408437 2480603.2392691374 0.9844024284955979 1.2532982732111666 1.2588284066510669 1.3580039048923458 1.2895315979192485 1.1130751099704383 1.1168338699183733 0.7739391531453272 0.964454175313147 1.0 21.242259570772532 2.064649122305765 2.3756727789517065 0.8943996321941979 1.229647101810623 0.5647953646416978 0.11396941170481087 0.19325981135144127 2.1038440771403457 0.058074201451281816 0.03388349047550149 116.0510628562249 -2.064649122305765 0.33524746961642504 EHQLASASELPLGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHQLASASELPLGSR 15 0 O60232;H0YEB6;G3V1B8 O60232 SSSCA1 Sjoegren syndrome/scleroderma autoantigen 1 0 143.83 4.3431e-06 381060000.0 105600.0 145430.0 128750.0 109700.0 132180.0 146180.0 129480.0 87699.0 134140.0 121420.0 False True 105031.46133326294 150270.5496357086 146876.88088493844 123588.00875220569 149012.3395077594 136074.92067070663 123216.55773836629 94243.54470649867 101082.99438391076 113670.87164710814 0.923996269328643 1.3219793906588873 1.2921241718011853 1.0872443130011824 1.310910502827576 1.1970957792349124 1.0839765364067304 0.8290914228147935 0.8892603084607592 1.0 16.79450308298464 1.9547547195809196 3.570493702981804 0.8933542365083124 1.1989268363350822 0.5287286850048621 0.11868236276735424 0.16575265609555906 4.083909029002839 0.05466765514158147 0.03176099576031425 90.10620928898767 -1.9547547195809196 0.3055725998267699 EHQMAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EHQMAK 6 0 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;B7Z4S1;S4R3M9;O75764 A0A1W2PRL9;S4R3M9 TCEA1;TCEA3 Transcription elongation factor A protein 1;Transcription elongation factor A protein 3 0 ;; 94.163 0.044794 455440000.0 1321410.0 1285060.0 1212960.0 1088970.0 1080040.0 760930.0 1200500.0 787140.0 1933890.0 1320220.0 False True 1314295.6753824514 1327832.4452648265 1383734.224762678 1226833.4903453893 1217576.6921013822 708328.7001365488 1142427.228644647 845880.3838159302 1457308.722298353 1235962.429302791 1.0633783391974532 1.0743307513108304 1.1195601030876363 0.992613902541883 0.9851243559144592 0.5730988930918545 0.9243219709268126 0.6843900459766348 1.1790882050681946 1.0 20.2372034582927 2.9862414999370084 22.58516866409378 0.8369189284395596 1.0575800788566956 0.2286856848170642 0.1589204030316204 215.06279160013142 353037.0036122997 0.045465746814512785 0.05020431719939803 968.8164402843414 -2.9862414999370084 0.22066115041713597 EHQTSAYS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EHQTSAYSPPR 11 0 H3BRF9;Q96K21-2;Q96K21;Q96K21-4;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 EHQTS(0.001)AY(0.01)S(0.99)PPR;EHQTS(0.003)AY(0.001)S(0.996)PPR;EHQT(0.001)S(0.017)AY(0.144)S(0.837)PPR 128.71 0.00016759999999999998 1210240000.0 350391.0 480110.0 419334.0 415838.0 439987.0 484191.0 475434.0 262623.0 484645.0 427913.0 True False 348504.5337881002 496090.17111737566 478372.582283532 468483.0481631694 496016.7364427335 450720.01583301544 452435.4410857467 282221.2618325723 365210.73366028327 400603.225985249 0.8699493942690637 1.2383579036271732 1.1941306291456242 1.1694440228507295 1.2381745933843225 1.1251033106997792 1.129385416138427 0.7044907367844417 0.9116520037053597 1.0 18.611814513396173 1.7593589341653868 24.999999999999996 0.8469821856147844 1.1484173275330674 0.5010308352111599 0.12042761108862544 6.636566906220129 7984.178413287113 0.05278354293747971 0.0292717872740905 57.4591152080811 -1.7593589341653868 0.3014351419182829 EHRPGPIGNER ddPTM_BT-474_Trastuzumab_2h_R1 2 EHRPGPIGNER 11 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 0 ; 93.623 0.0054747 187595000.0 63385.0 75814.0 74866.0 82278.0 89173.0 67914.0 74538.0 46563.0 62674.0 70080.0 False True 63043.7422027355 78337.42315946921 85406.48205306256 92694.38636384661 100528.65298021975 63219.26503235989 70932.31217718836 50037.7675021231 47228.832488573295 65607.43440149342 0.960923754721621 1.1940327170861909 1.3017805502103044 1.4128640634930334 1.5322753266805296 0.9635991044167523 1.0811627191989956 0.7626844115852836 0.7198701323930787 1.0 16.001571684735058 2.2481190540629874 1.8360021328622596 0.8242324572192974 1.2755503298262023 0.524412332468591 0.1745162246737833 0.2675343709281361 1.8119729447921236 0.09081039594632072 0.0583454482400151 177.05942685388436 -2.2481190540629874 0.4513178726069049 EHS(ph)PSKEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHSPSKEK 8 1 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 EHS(0.985)PS(0.015)KEK;EHS(0.933)PS(0.067)KEK 115.29 0.0015097 1857090000.0 2431700.0 1422910.0 1257030.0 1238810.0 1296590.0 1336400.0 1837610.0 1203550.0 3388000.0 1708470.0 True False 2418607.997387267 1470270.699182742 1434008.8976993721 1395643.21898195 1461703.0510089714 1244017.8135472196 1748717.7839480944 1293365.012503065 2553072.796874088 1599433.9819052443 1.5121649438173268 0.9192443800846077 0.8965727338062319 0.8725856989229784 0.9138877049916071 0.7777862841611923 1.0933353947282172 0.8086391980758154 1.5962351842949278 1.0 20.609130014454518 -0.4917001382640023 6.903496614242966 1.000002593720778 1.0059175680791586 0.0 0.2736934827840657 0.0 0.0 0.24741773655286123 0.05831691976745165 0.32232935692723186 0.4917001382640023 0.00591497435838062 EHSAFGDRPEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHSAFGDRPEKR 12 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 ;;; 177.1 1.4237e-05 1180040000.0 754420.0 888320.0 811740.0 756656.0 843140.0 882290.0 950820.0 618322.0 1241360.0 926570.0 False True 750358.2865439412 917887.1941992209 926025.9362294376 852448.572018312 950508.8813176906 821299.3689872611 904825.2041148716 664464.3274154963 935443.4613717871 867435.5093235134 0.8650306316479053 1.058161885619662 1.0675444183183336 0.9827227071706008 1.095768931639614 0.9468131753423001 1.0431037170942163 0.7660100610057938 1.0784011621812797 1.0 19.72639697698342 EHSIDGTGWAPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHSIDGTGWAPTR 13 0 C9JF62;C9JSK8;C9IZ93;C9J9P8;Q969M7-3;Q969M7-7;Q969M7-6;Q969M7;Q969M7-2 C9JF62 UBE2F NEDD8-conjugating enzyme UBE2F 0 ; 159.08 4.6168e-05 239220000.0 1080560.0 988550.0 879870.0 830280.0 840990.0 1026620.0 1030180.0 930090.0 1336430.0 1012060.0 False True 1074742.3850215033 1021453.2891589059 1003748.0480328602 935393.3628694733 948085.0915617389 955652.175803535 980346.2577302316 999498.038701322 1007084.7337445203 947469.4643318407 1.134329311371967 1.0780857089460278 1.0593988363949094 0.9872543634206897 1.0006497594414108 1.0086363854242677 1.0346995809744388 1.0549131938580967 1.0629205179237313 1.0 19.853719922346492 4.448933909547749 1.75295014820688 1.0253814081149282 1.1396769008144805 0.6752803574388695 0.024424413589912538 0.34869857236174445 1.621474724695298 0.007307958363150076 0.05526348956921808 28114.729510093133 -4.448933909547749 0.1142954926995523 EHSNPNYDK ddPTM_BT-474_Trastuzumab_2h_R1 5 EHSNPNYDK 9 0 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;; 152.54 8.0228e-05 1814010000.0 3261290.0 2905460.0 2695280.0 2556840.0 2423450.0 2958120.0 3102550.0 2289320.0 4179840.0 3162950.0 False True 3243731.5770033854 3002166.4797123373 3074751.9962062715 2880535.6818412873 2732061.9925864697 2753632.1270654732 2952467.8036080375 2460160.6833314085 3149774.4389864774 2961087.8230622704 1.095452675108033 1.0138728261722358 1.038385951358394 0.9727964362983066 0.9226548335743218 0.9299393640468749 0.9970889011169827 0.8308300294812541 1.0637220599992447 1.0 21.497695849443648 3.853921519894931 1.4038811417780295 0.941766715143435 1.0660076985077724 0.29869700871169125 0.061119210086785156 0.4849463585017127 1.7925615775982726 0.0180848442898785 0.053030856260320926 7143.672231674156 -3.853921519894931 0.12424098336433742 EHSNPS(ph)PSQDTDGTK ddPTM_BT-474_Trastuzumab_2h_R1 6 EHSNPSPSQDTDGTK 15 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 EHSNPS(0.996)PS(0.004)QDTDGTK;EHSNPS(0.999)PS(0.001)QDTDGTK;EHS(0.02)NPS(0.976)PS(0.003)QDTDGTK;EHS(0.004)NPS(0.992)PS(0.004)QDTDGTK;EHS(0.002)NPS(0.957)PS(0.041)QDTDGTK;EHS(0.007)NPS(0.99)PS(0.003)QDTDGTK 276.79 9.575599999999999e-34 2760390000.0 3852250.0 3223491.0 2905873.0 2960812.0 2944970.0 3912760.0 3741330.0 2795470.0 4883110.0 3635810.0 True False 3831509.914025215 3330782.9492935436 3314994.6600990975 3335650.495621105 3319994.47329525 3642280.1108463164 3560347.5746314703 3004082.16650903 3679732.970821673 3403769.4930264517 1.1256666827395645 0.9785571426377606 0.9739186707239625 0.9799871884553562 0.9753875754798209 1.0700724941299693 1.0460013763933813 0.8825750899594434 1.0810758420511752 1.0 21.698701908778208 4.7422471939609965 24.320046249764523 0.9922803472413624 1.1256667575474621 0.32161364014882 0.054661695736960524 286.27498354101607 1888416.094143818 0.013144766226952603 0.09655979140779788 55239.17629953276 -4.7422471939609965 0.13338641030609977 EHTALLK ddPTM_BT-474_Trastuzumab_2h_R1 6 EHTALLK 7 0 C9K025;P18077;F8WBS5;F8WB72 C9K025 RPL35A 60S ribosomal protein L35a 0 ;;;;; 132.09 0.0034023000000000005 6323840000.0 8810930.0 8821910.0 8255070.0 7665610.0 7594380.0 8831940.0 9489210.0 5814140.0 11275180.0 8471310.0 False True 8763492.93186635 9115541.941392787 9417312.101645272 8636075.4400273 8561479.277583135 8221408.775950469 9030180.659997564 6248020.650404705 8496562.968671413 7930663.743146613 1.105013806623618 1.1494046698512594 1.1874557296396995 1.0889473718376066 1.0795413290573124 1.0366608700381612 1.138641222533374 0.7878307355804882 1.0713558466041166 1.0 22.919010184165593 1.766135915392926 24.999999997984865 0.9328673951881921 1.1115003036909235 0.4648669974363919 0.07735445092040844 14.345342704390562 13013.500083094797 0.034527135875500166 0.01914931910309335 58.362772593670186 -1.766135915392926 0.1786329085027314 EHTLAWK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHTLAWK 7 0 P22102;P22102-2;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 ; 134.66 0.0031526 586070000.0 747240.0 772650.0 768420.0 680960.0 625750.0 800290.0 870220.0 530900.0 1144940.0 830050.0 False True 743216.9428661685 798367.1881732113 876606.8567736262 767169.4661795985 705435.5533891702 744967.8359800227 828124.1340367722 570518.4538555753 862784.8784099797 777075.4983584424 0.956428229221228 1.0273997698547273 1.1280845408527767 0.9872521624993064 0.9078082565714525 0.9586814119783128 1.0656932766329257 0.734186646034761 1.1102973652271841 1.0 19.567695247865064 3.480100491639253 23.281322224647525 0.9424061932527599 1.0398728395480301 0.07475795702877219 0.10316072976933688 91.16971384254435 712454.5753126369 0.02825158317868168 0.0390724171062539 3020.650589545867 -3.480100491639253 0.09746664629527024 EHTTSSSVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHTTSSSVSK 10 0 Q9P013 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog 0 ; 115.7 0.0011882 127926000.0 85195.0 114864.0 113896.0 114850.0 119847.0 99549.0 125780.0 90125.0 146722.0 128677.0 False True 84736.31958605438 118687.17880324577 129931.56679822087 129389.99822416433 135108.80506117776 92667.41194313977 119695.54087373891 96850.5851454771 110564.32907407304 120464.72369407791 0.7034118950975525 0.98524427038619 1.0785860193244967 1.074090358209365 1.1215632337669965 0.7692493628132178 0.9936148708372722 0.8039746589336038 0.9178149891818366 1.0 16.878251210912712 2.7376600787149585 24.997347630881695 0.8863511496595345 1.0014782167949343 0.12003993148475867 0.1267501051839723 154.84026377731593 4298045.827063331 0.04013785799241119 0.03984609415606918 546.5879822784195 -2.7376600787149585 0.11512706713539977 EHVEEISELFYDAK ddPTM_BT-474_Trastuzumab_2h_R1 4 EHVEEISELFYDAK 14 0 Q9Y265;H7C4G5 Q9Y265 RUVBL1 RuvB-like 1 0 ;;; 254.47 2.9567000000000004e-24 1435290000.0 1912670.0 1778110.0 1633930.0 1567940.0 1571940.0 2020440.0 1957270.0 1376420.0 2581580.0 1904690.0 False True 1902372.3972376154 1837293.316459806 1863973.141625844 1766441.0432354882 1772117.2413816557 1880771.7384041788 1862589.3726025077 1479135.44971914 1945384.2003997045 1783131.0535128491 1.0668718900329033 1.0303748077519344 1.045337154525873 0.9906400540529644 0.9938233299737023 1.0547579970069911 1.0445611212552897 0.8295158377760155 1.0909933942136274 1.0 20.765981308913513 EHVIEALR ddPTM_BT-474_Trastuzumab_2h_R1 7 EHVIEALR 8 0 P27635;X1WI28;A0A087WV22;H7C123;H7C2C5;F8W7C6 P27635;F8W7C6 RPL10 60S ribosomal protein L10 0 ;;;;;; 148.99 0.00051244 13104140000.0 10632040.0 12329320.0 11371370.0 10920730.0 10360360.0 11370270.0 10971730.0 7153180.0 12449910.0 10624510.0 False True 10574798.277970683 12739693.96296868 12972360.05428011 12303293.298272323 11679690.435335232 10584269.997636586 10440985.503821176 7686986.614712051 9381796.500746936 9946444.675699366 1.0631736889671217 1.2808289170997587 1.3042208022303188 1.2369538764269292 1.1742578193663955 1.064125960856699 1.049720361822355 0.7728376183997178 0.9432311551149578 1.0 23.245749500473455 2.369702534374646 1.495579727739635 0.8882273335158053 1.227240266573718 0.6848437493854895 0.08773367658739673 0.20240786575671119 0.9118039136789805 0.045662190436507856 0.031087376531568105 234.26237091986883 -2.369702534374646 0.3390129330579128 EHVMNEVDTNKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EHVMNEVDTNKDR 13 1 P80303-2;P80303;E9PKG6;H0YD18 P80303-2 NUCB2 Nucleobindin-2;Nesfatin-1 0 ; 159.08 2.6519e-05 631120000.0 635540.0 657810.0 647900.0 624700.0 611240.0 658910.0 673700.0 447060.0 963060.0 647610.0 False True 632118.3232551317 679704.8081954577 739118.6883522454 703786.9559480656 689077.7908966789 613361.1026073013 641110.5572160748 480421.88732468156 725726.7673428436 606278.9753531838 1.0426195678101742 1.1211089874912785 1.2191065803027008 1.1608302193525335 1.136568838619649 1.0116813010874934 1.0574514097946413 0.7924106011507573 1.1970178694058726 1.0 19.209622267715755 2.6002275260450256 2.1723862455414165 0.9751488553589193 1.1430893224903076 0.2386502648632015 0.10315840796333253 0.3585422278609748 3.353712933971079 0.039050489761532706 0.03525815747996028 398.3157927792229 -2.6002275260450256 0.16794046713138833 EHVVAASK ddPTM_BT-474_Trastuzumab_2h_R1 4 EHVVAASK 8 0 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 ;;; 122.52 0.0019920000000000003 796630000.0 2797920.0 2955130.0 2694440.0 2520700.0 2492160.0 2637740.0 2911730.0 1956650.0 3890930.0 2836070.0 False True 2782856.3095981376 3053489.7156361896 3073793.731507678 2839820.361546805 2809521.803810397 2455399.2423720714 2770878.4960112274 2102665.1586673814 2932062.437290813 2655069.5845183125 1.0481293318355753 1.1500601466119988 1.1577074097910436 1.0695841563271158 1.0581725692587096 0.9247965690577312 1.0436180325247202 0.7919435222820538 1.104326023840446 1.0 21.340318241247754 3.002140316773533 1.808934962287808 0.9500946301867679 1.1185083090284844 0.34392959894938513 0.08399151074656003 0.31956091820192806 2.1188332257711937 0.02850712912316762 0.03371959286548854 1004.9404253517234 -3.002140316773533 0.16841367884171654 EHVYDLFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EHVYDLFEK 9 0 A0A499FI31;Q15020-4;Q15020;Q15020-2;A0A494C0L2;F8W667;F8VVK9;F8VZM2 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 ; 179.8 4.9378e-05 890280000.0 1506150.0 1520540.0 1361270.0 1268230.0 1291130.0 1589620.0 1491200.0 1106240.0 2063110.0 1517980.0 False True 1498041.0557489975 1571150.2547141598 1552924.983629051 1428787.7879654486 1455547.7523729284 1479733.3109629806 1419064.9590628033 1188793.2461728973 1554684.1847576427 1421101.2167919392 1.0541409985776706 1.1055864537650233 1.0927617014745064 1.005408883676042 1.024239325935383 1.0412582112225617 0.9985671268836623 0.8365296096618192 1.0939996155004779 1.0 20.43857788235906 2.9718531164814017 0.8833479156148522 0.9598448249052491 1.0840197696914606 0.21279878222065773 0.0653127332184832 0.6953530602888189 1.196988075359826 0.036872102680762825 0.04502328115391185 937.2449660081079 -2.9718531164814017 0.1241749447862115 EHYPNGVCTVYGK ddPTM_BT-474_Trastuzumab_2h_R1 3 EHYPNGVCTVYGK 13 0 P47755;F8W9N7;A0A0D9SET8 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 0 ;; 132.05 0.00012333 1817510000.0 3032980.0 3147060.0 3033280.0 3002070.0 2949600.0 3597350.0 3571610.0 2548290.0 4160900.0 3554060.0 False True 3016650.7726757564 3251807.98966206 3460339.4582576044 3382131.7541908277 3325214.076351094 3348673.6617510347 3398837.579424827 2738456.3397544245 3135501.948203477 3327236.8480161503 0.9066534516394349 0.9773298800777995 1.040003948117134 1.0164986469801236 0.9993920566050889 1.006442827701811 1.0215195775591894 0.8230422013350858 0.9423741354851266 1.0 21.66589313686632 1.7633898612575756 24.999999999246537 0.9041597993945624 0.9978150221311949 0.2658421784423757 0.053594439089740105 14.66092578862658 14771.9661935582 0.02406323294028643 0.013345181574380164 57.99490765664701 -1.7633898612575756 0.09365522273663252 EHYPVSSPSS(ph)PS(ph)PPAQPGGVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 2 EHYPVSS(0.015)PS(0.153)S(0.836)PS(0.996)PPAQPGGVSR 193.81 3.0907999999999998e-18 562040000.0 99945.0 108940.0 114070.0 127730.0 119700.0 130800.0 113090.0 97039.0 119520.0 120790.0 True False 99406.90722493349 112566.00204437935 130130.06448578593 143900.60490354788 134943.08548251484 121758.10387008084 107619.40465424671 104280.54293405752 90065.89748594775 113081.07878647809 0.8790763962610895 0.995445066958803 1.1507678020254837 1.272543616030263 1.1933303690648107 1.0767327759579204 0.9517012554987717 0.922174992077694 0.7964718629542962 1.0 16.7869980260054 2.1790635337240216 2.78227566699878 0.9032029002440141 1.1077808432611522 0.38447939183149127 0.11069012432447865 0.2939113608838356 4.6168854906188255 0.05256488627198825 0.03602057178493575 151.03010826764776 -2.1790635337240216 0.20457794301713816 EHYPVSSPSS(ph)PSPPAQPGGVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 EHYPVSSPS(0.003)S(0.997)PSPPAQPGGVSR;EHYPVSS(0.001)PS(0.003)S(0.772)PS(0.223)PPAQPGGVSR;EHYPVSS(0.001)PS(0.133)S(0.862)PS(0.004)PPAQPGGVSR;EHYPVSS(0.001)PS(0.036)S(0.935)PS(0.028)PPAQPGGVSR 244.77 4.972e-31 2170360000.0 229051.0 282025.0 242070.0 265147.0 280586.0 279163.0 295253.0 198444.0 281385.0 268222.0 True False 227817.81486595838 291412.0316372874 276151.3518898416 298714.58301386575 316316.9639364824 259865.11888901697 280970.484414009 213252.8989582138 212041.43711582472 251103.84232359266 0.9072653479048479 1.1605239845822446 1.0997496069135044 1.1896057832078812 1.259705789483105 1.0348910493935566 1.118941398164381 0.849261791396242 0.8444372461755126 1.0 17.937924578947385 1.7552699994789824 7.340802669555691 0.8871510311548576 1.117807049993455 0.49678954207793813 0.0973771503637016 0.10927213360632516 18.458222728883783 0.04635208628782174 0.024958268339748707 56.9206694832207 -1.7552699994789824 0.23065601883859732 EHYVDLK ddPTM_BT-474_Trastuzumab_2h_R1 7 EHYVDLK 7 0 Q32Q12;P22392-2;J3KPD9;E7ERL0;E5RHP0;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 ;;;;;; 139.28 0.0027038 18557918000.0 13816840.0 12755880.0 10574060.0 10229480.0 9917490.0 13704350.0 11707970.0 9364340.0 18710050.0 12330600.0 False True 13742451.668635247 13180451.75470769 12062795.736622853 11524531.119147792 11180423.565931391 12757000.541069906 11141610.762311261 10063154.601955011 14099208.879325269 11543650.551242229 1.1904771032034058 1.141792338238212 1.044972358014143 0.9983437274015213 0.9685344784391667 1.105109729755039 0.965172214184212 0.8717480278257471 1.2213821630115123 1.0 23.46059619662898 4.2603217639698325 2.1058329316683695 1.0034676247891434 1.18987327656115 0.2995306833224386 0.08832109375605264 0.3859961087003445 3.2188621608628414 0.023419999687479143 0.09471578029789265 18210.495543697474 -4.2603217639698325 0.18640565177200652 EIAATCSGTEWGQSSGAAS(ph)PGLFQAGHR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIAATCSGTEWGQSSGAASPGLFQAGHR 28 0 P49757-3;P49757;G3V3Z8 P49757-3 NUMB Protein numb homolog 1 EIAATCSGTEWGQSSGAAS(1)PGLFQAGHR;EIAATCSGTEWGQSSGAAS(1)PGLFQAGHR;EIAATCSGTEWGQSSGAAS(1)PGLFQAGHR;EIAATCSGTEWGQSSGAAS(1)PGLFQAGHR 272.87 1.1804999999999996e-61 1800120000.0 470140.0 450936.0 503778.0 504834.0 504163.0 557082.0 498862.0 450671.0 494938.0 515468.0 True False 467608.8184774646 465945.1321634318 574705.5634831272 568745.9326382038 568365.1696417807 518572.23256997287 474730.139222096 484302.3584809688 372967.1617294171 482570.3909256421 0.9689960827901626 0.9655485312094665 1.190925871727762 1.1785761068913991 1.1777870758949205 1.0746043319717022 0.9837531438915941 1.0035890464642983 0.7728761829212322 1.0 18.88037987325777 1.845424161324701 1.614700997461855 0.9025144957589677 1.0984073646311168 0.3951422247214581 0.09509247455571022 0.3913799222619631 1.9310420667853727 0.07139847324368082 0.030696324987516153 70.05258428563486 -1.845424161324701 0.19589286887214907 EIADGLCLEVEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIADGLCLEVEGK 13 0 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 116.24 0.0013984000000000002 117860000.0 114880.0 115120.0 116800.0 109270.0 103870.0 104280.0 121520.0 117440.0 145390.0 118750.0 False True 114261.49884436783 118951.69960849057 133244.4247562006 123103.57079629453 117097.22881427582 97071.36904871598 115641.61334851936 126203.96914823655 109560.5826261875 111171.27333301007 1.0277969786502408 1.0699859418914315 1.1985508554630935 1.1073325608814575 1.0533047369486785 0.8731695350645281 1.0402112873360596 1.1352210455501082 0.9855116285121805 1.0 16.76242451812692 3.1119343534095867 4.956579358252857 1.022190674716716 1.1050931030956739 0.25508983352545633 0.07299854345419486 0.36156273233217534 14.260095715413673 0.023624204765649765 0.028528038807783714 1294.000229654136 -3.1119343534095867 0.0829024283789579 EIADYLAAGKDER ddPTM_BT-474_Trastuzumab_2h_R1 4 EIADYLAAGKDER 13 1 P53990-2;P53990;P53990-4;P53990-5;H3BQF7;H3BMU1;H3BUI0;P53990-3;F5GXM3;H3BPP6;H3BRE2 P53990-2 IST1 IST1 homolog 0 ;;; 224.42 1.2900000000000002e-11 1788640000.0 3572140.0 3803400.0 3647710.0 3412040.0 3154650.0 4013960.0 4234670.0 3589260.0 5271400.0 4141460.0 False True 3552907.9951420613 3929993.86979615 4161275.8615363063 3844003.9141556523 3556375.97842452 3736484.393045493 4029822.8340896503 3857108.807092978 3972334.103141105 3877148.4771177126 0.9163714044253748 1.013629963616385 1.0732825647754958 0.9914513041845898 0.9172658719194432 0.963719706660089 1.0393780010935862 0.9948313379941456 1.0245504206468135 1.0 21.88656455411659 2.2469627849394387 24.997847083195673 1.0130747604112595 0.9828541912150367 0.12963534037273983 0.044287235751989264 491.2949411944162 1461687.0590864678 0.016718902011424442 0.01376207002692614 176.58864938990857 -2.2469627849394387 -0.030220569196222846 EIAEAYDVLSDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIAEAYDVLSDPR 13 0 P25685 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ; 145.55 5.9474e-06 25639000.0 163703.0 168425.0 135066.0 143923.0 127377.0 162320.0 133572.0 136662.0 175559.0 163696.0 False True 162821.64123711316 174030.92430993734 154082.11878528234 162143.63704324252 143597.70592737096 151099.20046017988 127110.61206540834 146860.41239557465 132294.83682007602 153248.78113280341 1.0624661418743293 1.1356104957149669 1.0054378093340708 1.058041935764115 0.9370234782026164 0.9859732608851177 0.8294396283338522 0.9583137386802921 0.8632684439129797 1.0 17.2255160738951 3.3342223663879706 1.0795181547870727 0.9143940362203465 1.0908331016867796 0.5786058447804932 0.05684186289211894 0.32394246142888117 0.7966203731714756 0.02061993099230617 0.03694791876657046 2158.8494950032014 -3.3342223663879706 0.17643906546643306 EIAEAYLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIAEAYLGK 9 0 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 122.52 0.0013577 699930000.0 901950.0 849430.0 867100.0 808010.0 615100.0 823840.0 937920.0 788740.0 1213400.0 924170.0 False True 897094.0014160663 877702.7640587225 989180.1430316913 910303.9831528689 693429.3390166659 766889.8799107604 892549.2263976572 847599.7839405664 914373.8287269819 865188.6793782562 1.0368767215733081 1.0144639949397618 1.1433114725247424 1.052145046334903 0.801477591587282 0.8863845519359599 1.0316237922103453 0.9796704512473168 1.0568490440536868 1.0 19.722655262816108 3.4441291941705443 24.999996607448264 0.9585264469586685 1.0661566785822376 0.30885778091136107 0.0751856283805487 235.1504063172444 178186.4211283246 0.02207675534791741 0.029892214928044183 2780.540301457075 -3.4441291941705443 0.1076302316235691 EIAEEYGGVMVSFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIAEEYGGVMVSFPR 15 0 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7C2D1 Q00341 HDLBP Vigilin 0 148.18 7.0237e-06 0.0 13291.0 13851.0 11310.0 12650.0 13000.0 14596.0 13129.0 12775.0 18548.0 14093.0 False True 13219.442732768917 14312.022161893696 12902.349691717707 14251.488702966286 14655.472942963188 13587.012875288243 12493.900112349493 13728.33537013558 13977.0939304665 13193.572674375668 1.0019608076623168 1.0847722989914825 0.9779269050282666 1.0801841968586177 1.1108039728637564 1.029820596029816 0.9469686809407533 1.040532061251197 1.0593865873504131 1.0 13.687547662992612 -0.09183384385481869 8.063111492062067 1.000000000502451 1.0361766518152828 0.05048633206742148 0.0479451011034249 0.0 0.0 0.0464989258744435 0.010959901934569874 0.8094055093195792 0.09183384385481869 0.036176651312831876 EIAIVHS(ph)DAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIAIVHSDAEK 11 0 Q9H307 Q9H307 PNN Pinin 1 EIAIVHS(1)DAEK;EIAIVHS(1)DAEK 194.59 2.8613000000000003e-07 799500000.0 2125250.0 1630000.0 1464080.0 1101210.0 1117300.0 1553920.0 1376280.0 1454100.0 1716170.0 1404110.0 True False 2113807.890137474 1684253.5646441912 1670209.7379885123 1240623.0730903964 1259581.5322440583 1446501.1679342217 1309704.0784998385 1562612.3257701867 1293242.898999824 1314498.4976809495 1.6080717428484503 1.2812898360976197 1.2706060455261925 0.9437995366895551 0.9582221162414593 1.1004205561939802 0.9963526628675732 1.1887517015249252 0.9838298798221338 1.0 20.32608106244827 4.599482098939033 1.2279855508006978 1.0435196145213956 1.7584948154952886 0.8118486927456854 0.0862902048727174 0.4990550541051434 0.774835997871651 0.02567197651691309 0.4258917322399203 39763.27062271329 -4.599482098939033 0.714975200973893 EIAIVHS(ph)DAEKEQEEEEQKQEMEVK ddPTM_BT-474_Trastuzumab_2h_R1 8 EIAIVHSDAEKEQEEEEQKQEMEVK 25 2 Q9H307 Q9H307 PNN Pinin 1 EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK 322.87 1.8938999999999997e-75 6009230000.0 3957914.0 1737057.0 1545891.0 1203841.0 1381872.0 2411865.0 2315731.0 2321494.0 4426457.0 2131047.0 True False 3936605.030789582 1794873.8921718677 1763539.0156745524 1356247.1471674002 1557845.2082029544 2245138.4494695165 2203710.244578504 2494735.670587671 3335615.9838349707 1995041.755978871 1.9731943048270082 0.8996673311688204 0.8839609548970411 0.6798089027976034 0.7808584474657247 1.1253591273170798 1.1045935444580455 1.250467897782733 1.6719529673193956 1.0 20.92798751151777 1.7445086505875669 2.454421652181612 1.3606088597983388 1.0182548783718954 0.07876817977777306 0.36855152207223096 0.5614563713521149 6.972502438314952 0.2320931892275055 0.10296664919009163 55.52756773868063 -1.7445086505875669 -0.34235398142644335 EIAQDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIAQDFK 7 0 K7EK07;Q71DI3;Q16695;P84243;P68431;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00 K7EK07 H3F3B;HIST2H3A;HIST3H3;H3F3A;HIST1H3A Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1 0 105.57 0.018373 326330000.0 767950.0 721670.0 620190.0 635210.0 697390.0 873910.0 735830.0 808200.0 1307100.0 839140.0 False True 763815.4425272653 745690.3496912728 707507.3612118835 715627.5208704509 786198.4827456226 813498.6586628628 700235.0917564277 868511.9879564438 984982.7192426544 785585.3667761011 0.9722882767812039 0.9492161911714954 0.9006116854179255 0.9109481300641528 1.0007804574721622 1.0355318378718188 0.8913545508492153 1.1055602926015011 1.2538200950519784 1.0 19.583408531029118 1.61686249512962 5.417016457587793 1.142658706102394 0.953528637820215 0.5370194641158965 0.0712823987754248 0.09678007077227235 6.090902140769111 0.03732477298165898 0.017623592397797972 41.386861637222005 -1.61686249512962 -0.18913006828217904 EICELTGIDQSVLER ddPTM_BT-474_Trastuzumab_2h_R1 1 EICELTGIDQSVLER 15 0 E9PDF6;O43795;O43795-2 E9PDF6 MYO1B Unconventional myosin-Ib 0 157.56 2.1447e-08 0.0 22581.0 24320.0 22369.0 27061.0 24545.0 24857.0 28307.0 21792.0 24519.0 25225.0 False True 22459.426404984944 25129.476498249533 25518.360765166515 30486.919825373152 27670.660260387016 23138.694097084117 26937.682266758875 23418.229697533825 18476.620987767325 23615.118903790968 0.9510613305182004 1.0641266131510125 1.0805942103924795 1.2909915867702468 1.1717349539131479 0.9798254326540625 1.1406964485973659 0.99166257823815 0.782406434752325 1.0 14.527423179127604 1.5161958602221206 4.369600221442519 0.888066907539841 1.0999898097576184 0.3918785214702466 0.10294254231227187 0.16912117116025735 7.04236283878465 0.065413597020216 0.02713158432615166 32.82432924826009 -1.5161958602221206 0.21192290221777743 EIDDTYIEDAADVDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIDDTYIEDAADVDAR 16 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 194.86 3.3604e-10 117170000.0 58970.0 76532.0 64984.0 72531.0 70917.0 62653.0 70974.0 62037.0 81153.0 74095.0 False True 58652.51207218296 79079.32135542909 74133.18234894637 81713.41716322908 79947.85959200932 58321.94557929799 67540.71647299053 66666.51595750308 61153.930544487215 69366.193664079 0.8455489478955788 1.1400268225526118 1.0687220738671717 1.1780005914544516 1.1525478820298887 0.8407834205482689 0.9736834746918833 0.9610807864180974 0.8816100079044057 1.0 16.08194510119908 2.7450029027101817 24.99134025029298 0.9352611242086349 1.0856271356148506 0.3632620237182972 0.09593353530756879 558.3347034248699 2165930.3387986296 0.02910191206345583 0.03016741286744323 555.9079728007807 -2.7450029027101817 0.15036601140621564 EIDELVEVYTDVKHRWK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIDELVEVYTDVKHRWK 17 2 H7C4R7;A0A0A0MT68;Q13609-2;Q13609 H7C4R7 DNASE1L3 Deoxyribonuclease;Deoxyribonuclease gamma 0 28.58 0.09803 213380000.0 120280.0 178480.0 153240.0 161890.0 184390.0 215340.0 197560.0 179510.0 216130.0 239210.0 False True 119632.4258443643 184420.59890656182 174814.8600140426 182385.25740104448 207870.97353484476 200454.05265583502 188003.2680475105 192905.94773331002 162867.65749362324 223943.41300201562 0.5342082816398246 0.8235142817301884 0.7806206830136557 0.8144256397458893 0.928229907494416 0.8951102868742598 0.839512381843615 0.8614048752198564 0.7272714803723981 1.0 17.772774706296488 5.176159872922472 1.3425416297456767 0.857877742506257 1.011013739336786e-13 0.6403314804234805 0.0718963813793357 2.3034286605454013 1.6555597184393895 0.018647414341558418 3.581364901104092 150023.70026217107 -5.176159872922472 -0.8578777425061559 EIDKNDHLYILLSTLEPTDAGILGTTK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIDKNDHLYILLSTLEPTDAGILGTTK 27 1 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 0 ; 179.99 1.1227e-17 470580000.0 714960.0 596980.0 554560.0 537040.0 509450.0 738710.0 723490.0 668500.0 869580.0 742510.0 False True 711110.7347995238 616850.1184179694 632637.2276780697 605029.2089360487 574325.437753277 687644.7164362958 688492.0246998041 718386.864574218 655283.6607750192 695122.3761052066 1.0230007826591636 0.8873978735574602 0.9101091396636616 0.8703923650480756 0.8262220545556903 0.9892426716130067 0.9904616055628184 1.03346819102467 0.9426881989421705 1.0 19.406907460702136 2.5988399569437823 8.590789753277582 0.9973939361727544 0.9011575501588499 0.42309764631580316 0.051020749946492944 0.28418050722968397 18.787367426306893 0.016588886952443174 0.015624148251913963 397.04520628341186 -2.5988399569437823 -0.0962363860139045 EIDLLLGQTDDTR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIDLLLGQTDDTR 13 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;; 225.55 2.8518e-11 211038000.0 262122.0 309004.0 282381.0 282444.0 291150.0 306619.0 289096.0 284518.0 318321.0 307937.0 False True 260710.7642764923 319289.01134313765 322137.7903003481 318201.3814403639 328226.2267187487 285423.1502334886 275111.3220260331 305750.17791312997 239875.0548328676 288284.19702187035 0.9043532977866067 1.10754947597393 1.117431318220712 1.103776706207118 1.1385508817670231 0.9900756031099245 0.9543059413872836 1.060585981027377 0.8320784049590819 1.0 18.13713222870614 2.6087932797765787 6.6331813729694655 0.9759971605828692 1.0799457451414864 0.2996559761529478 0.08121051902949153 0.32853169395215986 16.322737199791227 0.026075500527804035 0.024520475408824842 406.2499118732727 -2.6087932797765787 0.10394858455861722 EIDSWFSER ddPTM_BT-474_Trastuzumab_2h_R1 1 EIDSWFSER 9 0 H0Y6F5;Q9H4I2;Q9H4I2-2;Q9Y6X8 H0Y6F5;Q9Y6X8 ZHX3;ZHX2 Zinc fingers and homeoboxes protein 3;Zinc fingers and homeoboxes protein 2 0 161.79 0.00014952 56106000.0 36898.0 56262.0 52034.0 56571.0 48781.0 43039.0 45453.0 41225.0 47814.0 47137.0 False True 36699.34526775321 58134.64665890283 59359.934912364166 63732.88279964467 54992.971202360575 40063.81523290833 43254.264742678155 44301.41883630833 36030.88037477495 44128.67630398397 0.8316439182301049 1.3173893152479261 1.345155574199834 1.4442509528410852 1.2461958030088423 0.9078861771634726 0.9801849582959987 1.0039145187844387 0.8164958342863788 1.0 15.429428852031727 2.745541915800298 22.47032179584234 0.9503060032583532 1.2589279953128776 0.45867687258687917 0.15933362532581788 122.4244316517089 394039.4398914312 0.04961954895717166 0.051461263735033125 556.598351587174 -2.745541915800298 0.30862199205452434 EIEDFDSLEALR ddPTM_BT-474_Trastuzumab_2h_R1 6 EIEDFDSLEALR 12 0 P46060;B0QYT5;B0QYT4 P46060 RANGAP1 Ran GTPase-activating protein 1 0 ;;;;; 232.84 2.5705999999999997e-13 1283400000.0 1698140.0 1968240.0 1671640.0 1744550.0 1723720.0 1825160.0 1759670.0 1755420.0 2088870.0 1924180.0 False True 1688997.402921092 2033751.6785737944 1906992.381844648 1965409.8511272578 1943225.5247111153 1698990.9851645033 1674548.0395078114 1886418.3542421462 1574095.9779239583 1801377.1850266212 0.9376145190248601 1.1289982439428636 1.0586302511744456 1.091059588998965 1.078744385608724 0.9431622645644838 0.9295932320154618 1.047208974290561 0.8738291963549522 1.0 20.780668863834933 2.7417909197975345 24.875580257332444 0.9663218480707796 1.0646571722278146 0.3855727604894179 0.06271257108242853 277.82700782392334 2139462.1986051467 0.018781412322896818 0.019165008867198324 551.8117193902752 -2.7417909197975345 0.09833532415703505 EIEDPEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIEDPEDR 8 0 P27824;P27824-2;P27824-3;D6RGY2 P27824 CANX Calnexin 0 ; 116.25 0.005368199999999999 3312700000.0 5749700.0 7799300.0 8168000.0 6616800.0 8551700.0 8611300.0 7028400.0 5824600.0 8141200.0 7055500.0 False True 5718744.254051719 8058894.985723593 9317983.402471283 7454486.201564217 9640708.305102952 8016021.099819782 6688409.440904649 6259261.228719504 6134910.346490943 6605211.949482542 0.8657926948884251 1.220081209711209 1.410701651019883 1.128576381587302 1.4595607800077048 1.2135902922006558 1.012595733802096 0.9476245844328824 0.9287984085009652 1.0 22.655173425052354 2.194051208357634 3.927687109876395 0.9598530488416994 1.2339422046059536 0.3822443822766384 0.15229866387326074 0.22035052202433933 7.12799148567456 0.05972117171245475 0.04397303298724447 156.33319667487407 -2.194051208357634 0.2740891557642542 EIEELKELLPEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIEELKELLPEIR 13 1 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33;E9PRH9;H0YDS9 P49321 NASP Nuclear autoantigenic sperm protein 0 ;; 169.04 2.6613e-05 895057000.0 1231680.0 1310830.0 1194761.0 1266220.0 1240630.0 1459550.0 1585210.0 1354780.0 2180750.0 1558790.0 False True 1225048.7717325112 1354460.184136533 1362972.9637512239 1426523.322171539 1398616.8767098787 1358654.743911136 1508527.3362097312 1455880.5630334474 1643333.383052883 1459306.687652738 0.8394731430327196 0.9281532083671539 0.9339866494708766 0.9775349720805225 0.95841188733228 0.9310275594614738 1.0337287898242715 0.9976522244102084 1.1261055657163799 1.0 20.476851680996106 6.631725957813875 0.25887424486398225 1.048068219147529 0.3703661680666131 0.6259163757356502 0.04402937241653848 16.255846079122367 0.41573555493708925 0.05417651528629285 4.2023276987558855 4282781.892435408 -6.631725957813875 -0.677702051080916 EIEELKQELIQAEIQNGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIEELKQELIQAEIQNGVK 19 1 Q12904;Q12904-2;A0A5F9ZHC5;D6R937 Q12904 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 ; 221.07 2.5094e-19 565900000.0 917680.0 729590.0 761660.0 687260.0 692540.0 1014760.0 1001830.0 913420.0 1428320.0 1030780.0 False True 912739.3128438322 753873.9621035322 868895.1075326006 774267.045533644 780730.8639938242 944612.0296880977 953367.6555377478 981584.0386527779 1076329.6745074363 964994.7379048424 0.9458490051723338 0.7812208009966074 0.9004143477705492 0.8023536451760364 0.8090519391731769 0.9788779073956415 0.9879511442804975 1.017191078973087 1.115373620424418 1.0 19.880161549854538 2.559216136697852 2.9935403915974184 1.0274511035834442 0.8446299388297493 0.7065499500229799 0.05594329711790097 0.14155301000489492 2.4742560407257703 0.01922950607320189 0.017359621973064288 362.4233218939821 -2.559216136697852 -0.1828211647536948 EIEGEEIEIVLAKPPDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 EIEGEEIEIVLAKPPDKK 18 2 O43390;O43390-3;B4DT28;A0A286YEZ8;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;; 184.8 3.1707e-14 1297230000.0 1138120.0 961340.0 769060.0 674740.0 719880.0 1157490.0 1110110.0 1071280.0 1822090.0 1140670.0 False True 1131992.48837702 993337.6207576983 877336.9632106478 760162.0148173493 811552.4509369496 1077475.4407383793 1056409.7382679787 1151224.3534496143 1373060.3342551081 1067871.4640232818 1.0600456389312602 0.9302033570737325 0.821575435591488 0.7118478584991724 0.7599720362218201 1.0089935699554269 0.9892667552777182 1.0780551707152979 1.285791764752291 1.0 20.026306574611798 2.1117391276839186 1.5366910175158 1.1321711178722553 0.8573011735823013 0.4757439506673753 0.11593341327063622 0.3524274701613113 1.586329528341982 0.07517774931570398 0.03997078506827021 129.34186764153924 -2.1117391276839186 -0.27486994428995404 EIEIDIEPTDKVER ddPTM_BT-474_Trastuzumab_2h_R1 3 EIEIDIEPTDKVER 14 1 Q15843;F8VSA6;E9PS38;S4R3E9;E9PL57 Q15843 NEDD8;NEDD8-MDP1 NEDD8 0 ;; 174.62 2.2921e-06 16701000000.0 14232800.0 13354600.0 12137600.0 10999400.0 11776100.0 16133800.0 15238300.0 14289100.0 20977500.0 15901000.0 False True 14156172.186212745 13799099.787973827 13846468.578089545 12391922.9122061 13275716.532586815 15018508.380880065 14501165.213040987 15355425.200579582 15807876.209098613 14886184.56646901 0.9509604105070273 0.9269735791840287 0.9301556430570251 0.832444529817183 0.8918145864246666 1.0088890349182633 0.9741357933788303 1.031521887426247 1.0619159085737593 1.0 23.827470692651655 2.731138580963987 20.466816080536898 1.0149665537626587 0.9048122111226584 0.6935469861342318 0.03616005822511991 29.172453043564094 80444.04718266804 0.012407863468228588 0.011975370340144582 538.4415688294432 -2.731138580963987 -0.11015434264000024 EIELTHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIELTHR 7 0 O43395;O43395-3 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 ;; 166.78 0.0011106 490244000.0 509848.0 669578.0 636001.0 636851.0 571664.0 640180.0 608659.0 540894.0 747941.0 616586.0 False True 507103.0350174378 691864.4989615519 725544.412580208 717476.2713021957 644462.0218820084 595925.8634216235 579215.838866824 581258.2568840797 563620.9624459266 577234.9535941678 0.8785036870341065 1.198583860269792 1.2569308356373565 1.2429536133160541 1.1164639595527774 1.032380072812771 1.003431679354 1.006969957839283 0.9764151649800946 1.0 19.138799137138687 2.7423871310505916 2.8950044958287613 1.0006538861190006 1.1578899735849935 0.3180867176190797 0.09898389190160353 0.31238193673604775 5.28713267291136 0.034127221572849836 0.0341574883133397 552.5697817220068 -2.7423871310505916 0.15723608746599282 EIENEDMR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIENEDMR 8 0 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ; 112.84 0.0068939 590130000.0 978420.0 1092200.0 971190.0 982860.0 1028410.0 1107380.0 1132090.0 1006890.0 1253460.0 1180450.0 False True 973152.2954326817 1128553.2167511564 1107925.1102651919 1107289.9752250947 1159371.917636366 1030829.4270921269 1077326.4816962262 1082029.2446838215 944561.5785034802 1105112.6703659086 0.8805910216471102 1.0212110013881992 1.0025449349869022 1.0019702107464437 1.049098384920781 0.9327821992583017 0.9748566916163559 0.979112151818471 0.8547197076210618 1.0 20.075762034589417 1.430863158903484 23.626250363380024 0.9238781394590396 0.9835619890141486 0.1266999219391951 0.05499681625951652 69.01845418224065 35254.81912499016 0.030095198463810854 0.01282957496021307 26.968895402996353 -1.430863158903484 0.05968384955510897 EIENMILNDPDFQHEDLNFLTR ddPTM_BT-474_Trastuzumab_2h_R1 10 EIENMILNDPDFQHEDLNFLTR 22 0 Q15067-2;Q15067;I3L0T4;K7ELT1 Q15067-2;K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 ;;;;;;;;; 279.74 1.3337999999999995e-45 2067080000.0 999192.0 1337771.0 1188538.0 1195671.0 1289295.0 1289519.0 1300498.0 1160473.0 1404226.0 1238243.0 False True 993812.4612926677 1382297.8990353525 1355873.8194425106 1347042.826005089 1453479.075999824 1200377.5867312134 1237587.943355189 1247073.3880224938 1058173.317964378 1159217.2716268334 0.8573133661974874 1.1924407381331112 1.1696459780483528 1.1620279122607131 1.253845255393777 1.0355069891657291 1.067606542489115 1.075789171319337 0.9128343269759505 1.0 20.144719564763633 1.6125171641415885 1.3177466034202594 0.9641119072938903 1.125829208989621 0.215111597247293 0.10601031751368803 0.5977475396888623 1.9904121377289914 0.08940797060800601 0.032147341086318074 40.97483035236021 -1.6125171641415885 0.16171730169573062 EIEQEAAVELSQLRDPQHDLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIEQEAAVELSQLRDPQHDLDR 22 1 P47985 P47985 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 0 ;; 236.59 1.0186e-30 389036000.0 80222.0 112465.0 122698.0 107058.0 138181.0 241994.0 114237.0 73505.0 134063.0 148609.0 False True 79790.09366550205 116208.3295384718 139972.81188986558 120611.53182309601 155777.5312870459 225265.5243726021 108710.91988228125 78990.316350827 101024.97000216368 139124.64638943388 0.5735151587890173 0.8352821196985086 1.0060964431712376 0.8669314528605057 1.1196975901092154 1.6191633202218179 0.7813922457562309 0.5677665201729928 0.7261471825730818 1.0 17.08601849513714 -2.526899546592188 2.1738985571347875 2.427114592636571 0.8979625672962522 0.010626588475155407 0.2903939365202867 12832394.608622504 1525064.723508596 90401098.79043095 0.07678311541943329 0.0029723534650773543 2.526899546592188 -1.5291520253403186 EIESEIDS(ph)EEELINK ddPTM_BT-474_Trastuzumab_2h_R1 6 EIESEIDSEEELINK 15 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK 346.42 3.2892e-82 965404000.0 1158342.0 1072815.0 931883.0 886068.0 908814.0 1177512.0 1185586.0 1104241.0 1470430.0 1212729.0 True False 1152105.6153758934 1108522.9987446377 1063084.0263277597 998244.1179494006 1024546.0759373954 1096113.3670050965 1128234.6758016597 1186645.0706421821 1108062.229252527 1135331.5969504658 1.0147745543861222 0.9763869883672428 0.9363643442878141 0.8792533570198466 0.9024201199802387 0.9654565855026755 0.9937490322934122 1.0451969044370348 0.975981142627242 1.0 20.114682297154822 2.2803438267766327 3.0651819157199403 1.0128374673024652 0.9398232133316163 0.3569159695235754 0.03857840479492409 0.2655057165590796 5.134838289318807 0.016682368339909544 0.01267954859707558 190.69698502450956 -2.2803438267766327 -0.07301425397084882 EIETTGQIMHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIETTGQIMHR 11 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 95.498 0.012686 733330000.0 328440.0 420680.0 423530.0 454940.0 414790.0 461600.0 550390.0 422970.0 466840.0 432480.0 False True 326671.7155331148 434682.0794935698 483159.34261124657 512535.3573539508 467611.0478470535 429690.6784895211 523765.53300602053 454534.16919814 351793.5373355069 404878.75613524334 0.8068383697167734 1.073610489329727 1.1933432794133927 1.265898369789366 1.1549409317263746 1.0612823517615968 1.2936355021577495 1.1226426734187802 0.8688861344406912 1.0 18.62713042166858 1.2545486529888232 22.077532105104336 0.9344435194908899 1.1340648212890543 0.24190663484009367 0.13097621714100388 69.03809856276526 95337.20696087973 0.08903780181803671 0.0321715640768775 17.970023828457848 -1.2545486529888232 0.1996213017981644 EIEVGGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIEVGGGR 8 0 P62081;B5MCP9 P62081 RPS7 40S ribosomal protein S7 0 ;;; 227.47 6.0763e-06 2565250000.0 1703380.0 1882570.0 1779320.0 1775310.0 1735600.0 1859040.0 1731490.0 1781220.0 2034460.0 1827540.0 False True 1694209.1913433077 1945230.2044124033 2029832.7898733113 2000064.0639733642 1956618.3722928395 1730528.9405094427 1647731.2137658652 1914143.6812518884 1533094.5933673116 1710904.832564288 0.9902416306838312 1.1369599099775238 1.1864089406019251 1.1690095357178265 1.143616135188699 1.011470017251481 0.9630759013616562 1.1187902709836806 0.8960723964228472 1.0 20.70632808285927 2.735014354317728 23.943510285913256 1.0116563956130462 1.131727050352507 0.4315200414958623 0.07204182821954434 178.60209516401432 1205871.1437132827 0.023093665596385142 0.022582437219317564 543.2682873197813 -2.735014354317728 0.12007065473946077 EIEVGGGRK ddPTM_BT-474_Trastuzumab_2h_R1 4 EIEVGGGRK 9 1 P62081;B5MCP9 P62081 RPS7 40S ribosomal protein S7 0 ;;; 126.82 0.0007417999999999999 4912800000.0 3138160.0 3543780.0 3317150.0 3288940.0 3069090.0 3594490.0 3669560.0 3278140.0 5233720.0 3971380.0 False True 3121264.4952423493 3661732.5750397514 3784175.886815331 3705319.466777389 3459920.4195783744 3346011.3668193216 3492049.36371949 3522771.4528576294 3943939.8342549657 3717923.1283305236 0.8395182975834966 0.9848865747485199 1.0178198301035226 0.9966100263189696 0.9306056903688589 0.8999678722033709 0.9392473279262074 0.9475105673955868 1.0607911186227057 1.0 21.826065510769617 1.2520170856362298 24.680459516413052 1.0303955443346375 0.9477664038704469 0.3200505901617541 0.04988822967703108 211.6295761141342 388153.9650835584 0.034415585033048125 0.012405950698352267 17.865578586767892 -1.2520170856362298 -0.08262914046419068 EIFDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 EIFDSR 6 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 ;;;; 129.96 0.037149 16257900000.0 21970300.0 24021400.0 20512000.0 21647400.0 21286000.0 23866300.0 20809600.0 18782620.0 23745300.0 23358000.0 False True 21852014.345929813 24820937.777757067 23399911.30649985 24387958.620442055 23996645.9279934 22216478.856227163 19802960.147608206 20184274.480611786 17893588.98571847 21867272.44221011 0.9993022405368286 1.135072416706417 1.0700882502991689 1.1152720891411356 1.0973771873657634 1.015969363117413 0.9055980895625011 0.9230357619567744 0.8182817053661758 1.0 24.38226994497705 2.402893721574796 2.6987634406739938 0.9053213835744048 1.0869548263587108 0.6966168564067997 0.053231327667194114 0.13726487354472403 2.0426416219318484 0.019296570825927367 0.015607553464096926 252.86791147174918 -2.402893721574796 0.18163344278430593 EIFISNITQANPGIVTCLENHPHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIFISNITQANPGIVTCLENHPHK 24 0 A0AVT1;A0AVT1-4;A0AVT1-3 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 146.99 1.0722000000000003e-07 405090000.0 196710.0 182010.0 166620.0 158740.0 143600.0 166940.0 163570.0 35266.0 212210.0 140050.0 False True 195650.93521653573 188068.0928226314 190078.64771299786 178836.467724021 161886.60881611626 155399.83073449013 155657.49420192002 37897.72799711947 159913.6889683145 131111.88909716276 1.492244041053708 1.4344091456363677 1.4497437953329828 1.3639988635316749 1.2347210457485467 1.185245913277387 1.1872111314525209 0.2890487526194875 1.2196734412834802 1.0 17.000438988095755 1.9582821734226619 10.226364718953972 0.7519593897461591 1.3475396898582719 0.4789292612313979 0.23934196418820047 0.48199907643894385 116.25234519279873 0.09779155816914456 0.06268833871669306 90.84105585413991 -1.9582821734226619 0.5955803001121128 EIFMQVEDERR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIFMQVEDERR 11 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 117.93 0.001264 177440000.0 95309.0 99952.0 94995.0 102410.0 94920.0 100740.0 108100.0 87494.0 129090.0 103000.0 False True 94795.86693382541 103278.84189774012 108369.47028865821 115375.09549966622 107007.49936508188 93776.08091645216 102870.79001789782 94023.24656552973 97277.49921737767 96426.45181726347 0.9830898591340045 1.0710633851120284 1.1238562473918237 1.1965087724923456 1.1097317940088722 0.9725140679672214 1.0668316429691609 0.975077323634307 1.0088258707447517 1.0 16.55714134209183 2.748377813584151 24.637390974381372 1.0059826382419759 1.1024543713075254 0.40945378238542707 0.05514732590622761 577.6278006404746 1449621.9401086292 0.01789183179239058 0.018758005939209586 560.2447733363813 -2.748377813584151 0.09647173306554957 EIFVDFAPFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIFVDFAPFLSR 12 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9;H0YAC6;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 A0A494C1L5;Q5T321 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin 0 98.04 0.010661 225010000.0 66834.0 69974.0 86100.0 107280.0 64800.0 75534.0 75928.0 71902.0 91532.0 73263.0 False True 66474.17316995544 72303.04228982382 98222.13160538413 120861.63700033377 73051.89590030871 70312.51236791041 72255.07256687272 77267.69235095804 68975.16506596179 68587.29261639008 0.9691908024675451 1.0541754825375014 1.432074774473782 1.76215786321112 1.0650937384114172 1.025153635399629 1.0534760858836723 1.1265598830838472 1.0056551648968137 1.0 16.06565368805385 3.05699746359017 24.999979339598436 1.0559618302419358 1.3103938223610754 0.2789458766118623 0.20311726769652502 121.05473517302853 53095.46326368213 0.06343411733503602 0.07581826650041587 1140.2431281803922 -3.05699746359017 0.2544319921191396 EIGDLWGHLHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIGDLWGHLHDR 12 0 O75146;O75146-2 O75146 HIP1R Huntingtin-interacting protein 1-related protein 0 ; 134.56 8.2841e-05 270780000.0 257971.0 294190.0 260000.0 270000.0 264000.0 299650.0 292030.0 46575.0 276670.0 211476.0 False True 256582.1127992724 303981.93630838994 296605.7400394874 304181.9723162761 297618.835149406 278935.90080022736 277903.39323706494 50050.66300305786 208488.3856880615 197979.42062628767 1.2960039583286036 1.5354218905519277 1.4981645016497447 1.536432278435948 1.5032816754787908 1.4089136129292739 1.4036983862158297 0.25280740212658315 1.0530810981693441 1.0 17.59499094866378 1.836984694311189 8.646090729527536 0.7037010644263476 1.4650528830387084 0.680265105114342 0.21426750487634943 0.15132284462920081 12.108632837764413 0.0847969508778335 0.05307838034697128 68.704422632774 -1.836984694311189 0.7613518186123608 EIGDVENWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIGDVENWAR 10 0 G8JLQ3;P78537-2;P78537 G8JLQ3 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 0 ; 147.4 6.2689e-05 255599000.0 292810.0 382800.0 359370.0 358180.0 363090.0 380060.0 345930.0 329380.0 404400.0 363350.0 False True 291233.54349424894 395541.2665925135 409966.17229996336 403525.5512749774 409327.3592969614 353787.34676500707 329196.0443190692 353960.00815775024 304741.03868237283 340160.69192041474 0.8561646022356605 1.1628070967266724 1.2052132478489919 1.1862791935094832 1.2033352736498113 1.040059463566062 0.9677662708779095 1.0405670512939926 0.8958737617857127 1.0 18.37585691100553 2.518487755491828 5.343752757857178 0.9870906143707173 1.1328688442999497 0.3149780767134337 0.101144175654263 0.24496659177796548 17.52040532098816 0.03403263031821621 0.03112446770017294 329.98010431336604 -2.518487755491828 0.1457782299292324 EIGDYIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIGDYIR 7 0 O60832;O60832-2;C9IYT0;H7C0M1;H7C2Q9 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 ;;; 148.33 0.0048655 1212480000.0 2021790.0 2401380.0 2219230.0 2282960.0 2273130.0 2219380.0 2257730.0 2048560.0 2648540.0 2203180.0 False True 2010904.9072819839 2481308.481635138 2531678.2941070437 2571982.5019228365 2562599.631602913 2065959.484458562 2148514.9745338447 2201433.949576902 1995842.8056177357 2062571.1661627023 0.9749505569900696 1.2030171478889977 1.2274380325102134 1.2469787923525886 1.242429678860723 1.001642764308668 1.0416682875146732 1.0673250871011382 0.9676479717938117 1.0 20.976012467736556 2.731587083678938 24.647594575538648 1.0258704091643738 1.1867709232371357 0.5227161231315183 0.07753882032843891 380.99784850454887 1346613.9394860796 0.025350079593225862 0.024361842969148503 538.9979130958654 -2.731587083678938 0.16090051407276196 EIGNLLHPSVPISNDEDVDNKVER ddPTM_BT-474_Trastuzumab_2h_R1 2 EIGNLLHPSVPISNDEDVDNKVER 24 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 210.5 2.4595e-25 2312480000.0 1274920.0 1399240.0 1438420.0 1457460.0 1376300.0 1847830.0 1935330.0 1757900.0 2205410.0 1619650.0 False True 1268055.972376928 1445812.857541557 1640937.0330292303 1641974.2865632582 1551563.6470307868 1720093.8614239434 1841710.6942214435 1889083.4244353275 1661916.256479952 1516282.5503478725 0.8362926633205696 0.95352469578302 1.0822105897431578 1.0828946664238461 1.023268154523588 1.134415126672342 1.2146223629619095 1.2458650427665512 1.0960465489091513 1.0 20.532107185632135 5.629899663483866 0.5348153366295021 1.1588522145539393 0.13637250286161484 0.5955303878821678 0.07311313585562074 6.266518155608512 0.667976661641774 0.03905485752669228 4.916781743911318 426480.97608312155 -5.629899663483866 -1.0224797116923243 EIGTHKPLPGITVGDIGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIGTHKPLPGITVGDIGPK 19 1 Q15067-2;Q15067;Q15067-3 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 ; 104.89 0.00020682 923570000.0 1635290.0 1752030.0 1561110.0 1439500.0 1552610.0 2082790.0 2111420.0 1828230.0 2732130.0 1992410.0 False True 1626485.780337797 1810345.2594255002 1780900.718588631 1621740.5524047406 1750325.6804595457 1938811.6296602874 2009282.5481923192 1964661.8061638304 2058833.1701663502 1865252.688011979 0.8719921921524401 0.9705630079295047 0.9547771891897113 0.8694481786986308 0.9383852877998398 1.0394364485418375 1.0772173449238398 1.053295255270643 1.103782443739938 1.0 20.830939656666633 2.721141176934301 3.5417503049768064 1.061883475082972 0.921143009857006 0.7550919035928766 0.038269488128723585 0.11231643948039419 3.0383752618377993 0.012294880302716811 0.012128984181888387 526.1882876208292 -2.721141176934301 -0.14074046522596595 EIHDGLDFYYSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIHDGLDFYYSSK 13 0 C9JA08;Q96D46;C9J0B9 C9JA08 NMD3 60S ribosomal export protein NMD3 0 99.941 0.0014622 0.0 205670.0 206720.0 192260.0 212830.0 212310.0 226970.0 216050.0 218900.0 255230.0 238150.0 False True 204562.69557208518 213600.55023512096 219328.53684612227 239774.25617804838 239346.42004003935 211280.09812991018 205598.83610885125 235235.42955167708 192331.98640678058 222951.06310952702 0.9175228533070131 0.9580602454009716 0.9837519220008153 1.0754568865197867 1.0735379177019575 0.9476523465874511 0.9221702432871948 1.0550989363801115 0.8626645853323224 1.0 17.76636755338527 4.4651056942615925 2.5513671568158647 0.9959809143496668 0.9189583663118055 0.10625698069266998 0.06443622920073225 0.6840370426395479 7.924427813264968 0.01639302943541329 0.08706995967033328 29181.371147095764 -4.4651056942615925 -0.07702254803786135 EIHQDWANR ddPTM_BT-474_Trastuzumab_2h_R1 5 EIHQDWANR 9 0 Q8WUW1;Q8WUW1-2 Q8WUW1 BRK1 Protein BRICK1 0 ;;;; 180.67 4.8372e-05 4226620000.0 1469304.0 1762320.0 1669730.0 1840190.0 1655560.0 1807910.0 1716500.0 1409450.0 1762806.0 1734820.0 False True 1461393.4305190218 1820977.7558550648 1904813.4704466674 2073157.8653210707 1866385.7527270862 1682933.4370623708 1633466.3373332238 1514630.3160420828 1328386.0816902074 1624102.302345874 0.8998161189773369 1.1212210913221548 1.1728408165515993 1.2764946286490544 1.1491799192891081 1.0362237862919845 1.00576566819333 0.9325953875284405 0.8179202010682883 1.0 20.63121108019614 2.184118762225104 1.6373792157664881 0.9105134549114516 1.1319793842073267 0.4467333350671473 0.09850250938993382 0.34435065127303943 1.8046384856271518 0.05783611297636494 0.03357219624096606 152.7983843770861 -2.184118762225104 0.22146592929587505 EIHQFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIHQFNR 7 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ; 153.73 0.0017266999999999998 587080000.0 909590.0 902380.0 784220.0 799100.0 673590.0 758900.0 694950.0 718200.0 1136020.0 890110.0 False True 904692.8685049491 932415.172799771 894631.3594375654 900265.9780664316 759367.6938192754 706439.0292584443 661332.6135331917 771795.7309457049 856063.0928881054 833302.4177384899 1.0856717192303447 1.118939718584118 1.0735974604100116 1.080359253618482 0.9112750397150329 0.8477582858521618 0.7936285788393496 0.926189237564306 1.0273138234872592 1.0 19.668480640367115 3.242530881570516 5.271369297085708 0.9024120310036486 1.0922029770705504 0.6262923450634226 0.06451159504677896 0.10868327934300176 8.8939602013738 0.01923363702809906 0.02479501972132329 1747.9575507927668 -3.242530881570516 0.18979094606690172 EIIDAS(ph)DKEGMS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIIDASDKEGMSPAK 15 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 EIIDAS(1)DKEGMS(1)PAK 84.946 0.0046273 149210000.0 790360.0 430180.0 420380.0 336690.0 374270.0 585660.0 528660.0 534290.0 966180.0 561640.0 True False 786104.7895772508 444498.2812506983 479565.84999153746 379314.9194783965 421931.0660279103 545174.702695348 503086.696122681 574161.4328696462 728077.8851487018 525795.6543558047 1.495076619719066 0.8453821890089404 0.9120764806987476 0.7214112865636485 0.802462063983493 1.0368566156433645 0.9568102968425134 1.091985884845508 1.384716437112303 1.0 19.004142692723622 1.5779444602336778 3.693001182923283 1.2046505018477924 0.9475161436339322 0.14452028265649042 0.2163155711188196 0.30097188920690976 9.415791486151239 0.13243398598365497 0.05570353690712221 37.83941906672687 -1.5779444602336778 -0.2571343582138602 EIIDAS(ph)DKEGMS(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 10 EIIDASDKEGMSPAKR 16 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR;EIIDAS(1)DKEGMS(1)PAKR 146.19 6.1559e-07 8592730000.0 10762100.0 6175852.0 5852575.0 5403778.0 5588194.0 8742570.0 8474570.0 8806440.0 15468590.0 8464890.0 True False 10704158.049381705 6381411.500438626 6676566.688506169 6087895.740738153 6299817.382079171 8138216.713696134 8064622.673098753 9463621.270996213 11656563.262986561 7924653.473043058 1.3507414659572894 0.8052606365875795 0.8425058220170194 0.7682223281367543 0.7949643985707363 1.0269492213608513 1.0176625010206215 1.1942000117971332 1.4709240350556874 1.0 22.91791642020365 1.9184756296507144 1.8472644210589222 1.2538141258562978 0.9041427910254031 0.31032504593990007 0.1920267767118314 0.369006646237526 2.3412730152995267 0.11971081500899443 0.05658523294587099 82.88494042470955 -1.9184756296507144 -0.34967133483089474 EIIDASDKEGMS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIIDASDKEGMSPAK 15 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 EIIDASDKEGMS(1)PAK 182.22 3.3665e-07 850000000.0 1466800.0 1020400.0 930090.0 830890.0 814950.0 1470400.0 1437200.0 1308300.0 2139200.0 1214800.0 True False 1458902.9117768018 1054363.3971551738 1061038.5875127949 936080.5888069298 918729.0519129116 1368754.70894929 1367677.1453628368 1405931.9894127871 1612022.823811407 1137270.4239573935 1.2828109137844403 0.9270999886608098 0.9329694724854161 0.8230941112049872 0.8078369335553306 1.2035437483605647 1.2025962484838832 1.2362336694913107 1.4174489988071646 1.0 20.117143913188706 2.6486715404785506 6.96553206823333 1.2283990580628867 0.9451559643714665 0.40853756977873334 0.1540173534249315 0.24350475053606851 16.240696752784842 0.049836052038468234 0.04693756748780303 445.31932332919433 -2.6486715404785506 -0.2832430936914202 EIIDASDKEGMS(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 8 EIIDASDKEGMSPAKR 16 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR;EIIDASDKEGMS(1)PAKR 142.53 7.825799999999998e-07 11217930000.0 5682710.0 4578310.0 4105210.0 3805020.0 3916210.0 5592010.0 5959230.0 5734120.0 9014250.0 5741170.0 True False 5652114.920768429 4730696.28070316 4683187.884875021 4286735.141862512 4414916.1303047575 5205447.510875622 5670959.278430682 6162029.151671371 6792808.872261585 5374763.615337077 1.0516025122741994 0.8801682491121939 0.8713290890619598 0.7975671952586273 0.8214158698452597 0.9684979439880286 1.0551085934734692 1.1464744484925449 1.2638339764149007 1.0 22.357769875006703 2.202404297483666 2.0446044731421233 1.1484823199746086 0.8798706929622078 0.611324249204469 0.08805037724600001 0.20281296285509348 1.6992573118475869 0.04324801261401643 0.02752369084211775 159.36916510425223 -2.202404297483666 -0.2686116270124008 EIIDLVLDR ddPTM_BT-474_Trastuzumab_2h_R1 12 EIIDLVLDR 9 0 P68363;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain 0 ;;;;;;;;;;; 212.2 9.1029e-06 19701363000.0 5768227.0 6998957.0 6338500.0 6207176.0 6523774.0 6556567.0 7051223.0 6284537.0 7943274.0 6999700.0 False True 5737171.506742269 7231913.052786144 7230905.704770358 6993003.8451639 7354537.949462056 6103326.955788575 6710128.405202325 6753521.063172261 5985760.557118423 6552973.153255334 0.8755066398970676 1.1036079171472772 1.10345419333486 1.0671497779126367 1.1223207813400742 0.9313828720260532 1.0239822822818863 1.0306041098027847 0.913441947209087 1.0 22.643718190515873 2.7367752012778026 24.96832704777144 0.9894842984613619 1.0605738771035642 0.19699337380919313 0.07344808017878382 278.6451533786102 3896709.5430509592 0.022947741819611563 0.022649291694986105 545.475439996313 -2.7367752012778026 0.07108957864220233 EIIEHGIELFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIIEHGIELFNK 12 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 136.7 0.00010532 198350000.0 600700.0 656900.0 592600.0 568740.0 589230.0 662580.0 628150.0 625140.0 714670.0 667980.0 False True 597465.8979440447 678764.5193955639 676032.9290284618 640742.4256857736 664264.947860169 616777.4041455518 597763.9847339733 671791.1211965991 538549.1545873678 625348.9445135506 0.9554120194586788 1.0854172304129568 1.0810491245880929 1.0246158265833443 1.0622308611664653 0.9862931880781114 0.9558886921908292 1.0742660191410016 0.8611978309266948 1.0 19.254301912273725 2.7274497402723346 22.925140900985127 0.9862463920939911 1.045403185240973 0.22193404415471618 0.06015048133810646 403.276603530158 832080.5113144987 0.01885857908401033 0.01797163197275914 533.887484641971 -2.7274497402723346 0.05915679314698197 EIIIEERPGQELTDVNGVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIIIEERPGQELTDVNGVR 19 1 Q9BV20;Q9BV20-2 Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase 0 ;; 250.04 3.23e-25 908060000.0 614860.0 679300.0 615330.0 712840.0 686270.0 660230.0 680150.0 609606.0 730470.0 673930.0 False True 611549.662077368 701910.0898544778 701963.115455761 803085.4709108684 773662.416659027 614589.8541142478 647248.5460746823 655097.8952365455 550455.4562965205 630919.2104194988 0.969299479200749 1.1125197620591978 1.1126038070532438 1.2728816267567697 1.2262464098131012 0.974118150096597 1.0258818171732733 1.0383229491474355 0.8724658358881197 1.0 19.26709575351266 2.7223773117099968 24.55904925955134 0.9926108972450471 1.143258803855047 0.45076948203224654 0.08594385045033616 667.6419789955054 1013181.580189945 0.02937669755731872 0.027777738650742897 527.6881137109054 -2.7223773117099968 0.15064790660999994 EIIKQEESVDPDYWEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIIKQEESVDPDYWEK 16 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 198.38 3.7275e-11 888740000.0 1459220.0 1461390.0 1317220.0 1392360.0 1265400.0 1803260.0 1884150.0 1580060.0 2781800.0 1904530.0 False True 1451363.7216545823 1510031.4827210912 1502673.126518513 1568632.6332381142 1426541.189386587 1678604.8806174474 1793006.4663480322 1697972.1005821067 2096262.6642102532 1782981.2648498318 0.8140095189260559 0.8469138248899496 0.8427868290837441 0.8797807717683613 0.8000875934648335 0.9414596292792929 1.0056227183626882 0.9523218970700262 1.1757065009804277 1.0 20.765860112864623 2.2194265733341405 1.0768720160955958 1.056284671743539 0.8357399209408212 0.7218397136521109 0.05748803396934839 0.27439189665596486 0.6067242937163627 0.03915085745408398 0.0217237284549793 165.7397095132511 -2.2194265733341405 -0.22054475080271785 EIILDDDECPLQIFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIILDDDECPLQIFR 15 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;H0Y7R8;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 0 ;; 215.45 5.4409e-12 61348000.0 51631.9 60441.8 52635.5 50320.0 47038.3 60392.0 55887.0 52020.0 71937.0 55313.0 False True 51353.91958724336 62453.56877516038 60046.12088403244 56690.50684057418 53028.348687152706 56217.243187476495 53183.5323009274 55901.99655220765 54209.09025641412 51782.87698415819 0.9917162308875566 1.206066028240699 1.1595748320898085 1.0947732173690807 1.0240518058387436 1.0856338322931516 1.0270486191255406 1.079545977511246 1.046853581986149 1.0 15.66018750113113 3.4527896036336467 5.721774446675809 1.0509726753867081 1.1279490083585557 0.2646792180504529 0.05621995372172715 0.21052366210081203 21.135484489051045 0.01479823899607363 0.020684132695584903 2836.544515827286 -3.4527896036336467 0.07697633297184758 EIIQDVTLHDLDVANAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIIQDVTLHDLDVANAR 17 0 Q9Y265;H7C4G5;Q9Y265-2;E7ETR0;H7C4I3 Q9Y265 RUVBL1 RuvB-like 1 0 ; 164.59 2.575e-09 921610000.0 257190.0 277030.0 237740.0 253360.0 257760.0 249710.0 246000.0 249600.0 258710.0 255950.0 False True 255805.31761649542 286250.7760818286 271211.72552687593 285435.3500224142 290584.2081367841 232448.13545411255 234100.04018874088 268226.4194431184 194954.38703639153 239615.0518701803 1.0675678160447397 1.1946276907383715 1.13186431073543 1.191224623806432 1.2127126650383302 0.970089873903453 0.9769838679231747 1.1194055521538742 0.8136149441146744 1.0 17.870359011012628 2.733001547985694 24.857192745788254 0.9946817942380979 1.1617615537612216 0.5646583807266006 0.07974839592794421 344.7581653232218 1541571.2330313143 0.025225602357813008 0.02438549803141036 540.7562503968439 -2.733001547985694 0.1670797595231237 EIISHDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIISHDTR 8 0 P00387-2;P00387;P00387-3;B1AHF3 P00387-2 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 103.55 0.0047518000000000005 375270000.0 508230.0 868020.0 918420.0 963340.0 1003200.0 763980.0 700470.0 489730.0 557660.0 725380.0 False True 505493.7461496619 896911.5209708291 1047725.5529502532 1085298.7452265248 1130951.573567743 711167.860815478 666585.5900447442 526276.1393985514 420232.16526115773 679085.627370937 0.744374090358337 1.320763516146262 1.5428474859738917 1.5981765796284508 1.6654034896102772 1.0472432814824053 0.9815928406928793 0.7749775848386253 0.6188205850977527 1.0 19.373233972904966 2.3802907248786704 2.485473920529462 0.8091696556454996 1.3906077301723123 0.47615640886890565 0.260406778024052 0.2466621453728477 3.119469707003795 0.10894992379774723 0.0856290557121941 240.04392804101153 -2.3802907248786704 0.5814380745268127 EIKPPFKPAVAQPDDTFYFDTEFTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIKPPFKPAVAQPDDTFYFDTEFTSR 26 2 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 0 134.31 2.277e-05 219710000.0 165100.0 162330.0 156620.0 145250.0 160280.0 187870.0 185610.0 177510.0 221160.0 184320.0 False True 164211.1199443343 167733.05591944297 178670.73463455567 163638.6351071818 180690.70794601072 174882.98909841068 176631.33520094363 190756.6975775158 166658.0813921702 172556.53979570867 0.9516366064059085 0.9720469367201251 1.0354329939977103 0.9483189411477254 1.0471391473190883 1.013482243590746 1.0236142623748665 1.1054735902988926 0.96581724221799 1.0 17.396709626576197 3.224757246908008 24.99244698504761 1.0354166912208755 0.9806990229423934 0.23634055034272883 0.04089986858500932 294.59240235735 533389.1551441574 0.011911783224754354 0.014307498779141288 1677.8658966251207 -3.224757246908008 -0.05471766827848212 EILDAFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 EILDAFDK 8 0 P07602;C9JIZ6;P07602-2;P07602-3;A0A0J9YXB8 P07602 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D 0 126.41 0.0028389 176090000.0 421270.0 439190.0 377350.0 329090.0 351200.0 410850.0 387470.0 348790.0 425840.0 347730.0 False True 419001.9291274965 453808.1736540391 430477.6000150021 370752.7602576421 395923.23827451275 382448.90653687116 368726.59582085867 374818.4809197325 320897.4379636543 325537.5736933691 1.287107734980428 1.3940270196935571 1.3223591830922667 1.1388939103135975 1.2162136425070287 1.1748226239994897 1.1326698532445605 1.1513831619104655 0.9857462360578829 1.0 18.312464543949538 3.302644825587684 0.27365887847248765 0.976384496734009 1.4809094245746313 0.7860059321355802 0.05736293962838262 1.8004456175445485 0.21358225166026962 0.08512669054882774 0.29816206119137006 2007.4504094026624 -3.302644825587684 0.5045249278406223 EILDESLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EILDESLR 8 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ;;; 164.53 0.00076672 1595390000.0 2250450.0 2589790.0 2402010.0 2343600.0 2377710.0 2654170.0 2523250.0 2248770.0 2957670.0 2433980.0 False True 2238333.827248502 2675989.594588886 2740192.1293548015 2640299.5197052774 2680497.2747086925 2470693.4751441344 2401190.7577489396 2416584.636422684 2228791.859247511 2278641.312564882 0.9823107370633033 1.1743794777321672 1.202555274603702 1.1587166023656905 1.1763577092752144 1.0842836305653893 1.0537818060737754 1.0605375330891944 0.9781231679411361 1.0 21.119742413053988 2.00765909906553 1.1322168321551858 1.0004424260086084 1.1441518709670346 0.4606848301391899 0.05980144211985557 0.44169523793477733 1.0458871714859608 0.04586708422029843 0.021458347448641772 101.77921549921665 -2.00765909906553 0.1437094449584262 EILDHQDGNVEDDGLTGLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EILDHQDGNVEDDGLTGLLR 20 0 Q70CQ2-3;Q70CQ2-2;Q70CQ2;A0A0C4DG73 Q70CQ2-3 USP34 Ubiquitin carboxyl-terminal hydrolase 34;Ubiquitin carboxyl-terminal hydrolase 0 ;;; 267.57 6.8372e-37 278700000.0 193946.0 232237.0 204611.0 227876.0 205127.0 234256.0 228243.0 195787.0 237048.0 231238.0 False True 192901.81628542644 239966.868154769 233418.4502893061 256725.07823534758 231248.70756701613 218062.43409930947 217202.01411706788 210397.62012624135 178630.69668046304 216480.19286718822 0.8910829842237472 1.108493414462126 1.0782439132087691 1.1859056241364763 1.068221089903077 1.007308942269337 1.0033343523964915 0.9719024052021307 0.8251595414553882 1.0 17.7238755041947 2.017284829837547 1.3657175401222426 0.9213901073838595 1.0721062194458184 0.3278732576097315 0.08134291813725275 0.4760404565021001 1.6544755213354598 0.05625489241255492 0.026851002910409472 104.06024159063925 -2.017284829837547 0.1507161120619589 EILDKFTEEVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EILDKFTEEVVK 12 1 P49189-3;P49189;P49189-2 P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase 0 ; 201.95 1.2982e-07 1432670000.0 2975160.0 2809770.0 2744490.0 2597130.0 2567620.0 3626600.0 3477300.0 3113200.0 5150800.0 3685000.0 False True 2959142.069131348 2903291.4959081686 3130890.3364652814 2925926.391710259 2894591.1875239303 3375901.678098127 3309089.714424013 3345522.792509279 3881454.3571838983 3449820.1451127795 0.8577670558633164 0.8415776399303436 0.9075517577055973 0.8481388213398025 0.8390556799387296 0.9785732403704089 0.9592064441712611 0.9697673072170866 1.1251178884448796 1.0 21.718089718891044 2.1994380404801928 0.9621374841242716 1.0425570753021711 0.8575812028809008 0.7283998048218072 0.04549438943670264 0.29686191080014157 0.5194830043266806 0.03394363540456045 0.018704926130546713 158.28437309250586 -2.1994380404801928 -0.18497587242127034 EILEVLDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EILEVLDGR 9 0 Q6P1N0-2;Q6P1N0;K7EMP1 Q6P1N0-2 CC2D1A Coiled-coil and C2 domain-containing protein 1A 0 ;;; 128.38 0.00097451 86574000.0 213458.0 268245.0 242831.0 251341.0 243059.0 258619.0 253000.0 220555.0 273767.0 244579.0 False True 212308.76584541306 277173.37266747304 277019.49407511076 283160.7448294265 274011.12292643765 240741.27725364242 240761.42344614383 237013.9340555969 206300.79113985447 228969.75882538312 0.9272349629687295 1.2105239315854412 1.209851883917873 1.2366731147468715 1.1967131569344227 1.051410799787043 1.0514987860460354 1.0351320422027803 0.9009958004855285 1.0 17.804797541433008 2.1763325075951045 1.2911766433289316 0.9749310847805919 1.1636231409013467 0.4154409711128306 0.08963643715801398 0.44090662397921204 1.4061693410525895 0.05892482385647972 0.03197952397062199 150.08334744099963 -2.1763325075951045 0.1886920561207548 EILFYDR ddPTM_BT-474_Trastuzumab_2h_R1 7 EILFYDR 7 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;;;;;; 150.84 0.0044711 2102075000.0 1315128.0 1701940.0 1661867.0 1640685.0 1416388.0 1488132.0 1587315.0 1309793.0 1831638.0 1533426.0 False True 1308047.4969724575 1758588.0440555448 1895843.4283930883 1848395.5527767777 1596756.6162105962 1385260.9375259269 1510530.509317848 1407536.4046540873 1380255.3575917531 1435561.4398479527 0.9111748620881035 1.2250176100033763 1.3206285539362816 1.2875767636755069 1.112287201291584 0.9649610940181331 1.0522228219489063 0.9804779966806341 0.9614742492233163 1.0 20.453183646345842 2.9474629247789506 4.346565637258586 0.9962583671283901 1.1993096682295323 0.42722170757235245 0.10592744111225728 0.20675615546720316 8.17757575878942 0.03353821728635167 0.03684020192453569 886.0595785422669 -2.9474629247789506 0.20305130110114222 EILGTAQSVGCNVDGR ddPTM_BT-474_Trastuzumab_2h_R1 3 EILGTAQSVGCNVDGR 16 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 ;; 275.82 6.568399999999999e-35 784410000.0 200949.0 188518.0 178215.0 182267.0 177642.0 191261.0 174126.0 172031.0 229808.0 206057.0 False True 199867.11291153252 194792.7076684625 203306.12292745078 205341.9835117434 200263.65573337433 178039.5772499659 165702.86015408402 184868.82677571787 173174.89766943306 192906.2658457268 1.0360840900386954 1.0097790593502254 1.0539114529853637 1.064465078993141 1.038139714412032 0.9229330963896721 0.8589812229666081 0.9583350025735466 0.8977152551795621 1.0 17.55754047919109 2.740602104305465 7.525932217550314 0.9219884992823797 1.0410038824894243 0.6985027984554354 0.03699288417535899 0.06554455930898274 32.254875040260785 0.01119283540949323 0.011238668726410021 550.303283724828 -2.740602104305465 0.11901538320704463 EILHCLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EILHCLK 7 0 Q08J23;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 80.18 0.030613 962170000.0 2082300.0 2455500.0 2464000.0 2111300.0 1621280.0 2229400.0 2332200.0 1745610.0 3457200.0 2086800.0 False True 2071089.1281652765 2537229.833118903 2810909.7825280633 2378590.363523537 1827740.3979205636 2075286.8254431055 2219382.5761308176 1875876.2822279742 2605219.3841065783 1953618.6374006327 1.0601296939513962 1.2987334296189905 1.438822157362345 1.21753054459408 0.935566626428403 1.0622783718957336 1.1360367543809853 0.9602059717877702 1.3335352838222951 1.0 20.89771743804899 3.4348069676053252 9.41151794085492 1.0665142947535962 1.2789724817317767 0.30714507389264645 0.13522737311051405 0.36867207805632035 77.97668377747381 0.03650904424474916 0.04953857554782486 2721.49140836284 -3.4348069676053252 0.21245818697818053 EILHNTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EILHNTEK 8 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ;;; 124.23 0.0013137 2320890000.0 2130580.0 2441360.0 2352220.0 2197780.0 2082240.0 2456750.0 2632610.0 2339000.0 3136140.0 2614950.0 False True 2119109.1940096915 2522619.1917667175 2683392.1301372414 2476018.722656538 2347400.9215965867 2286920.655067441 2505260.5967531716 2513548.057201337 2363280.319122991 2448061.6522286697 0.8656273799642643 1.0304557442293873 1.0961293101807021 1.0114200842950243 0.9588814560530192 0.9341760870219388 1.0233649934724598 1.0267503087240673 0.9653679746878534 1.0 21.22320846078797 4.7444398740311 24.58474291898105 1.0071225912023363 0.8656273018707946 0.4849502698971343 0.04310074720298549 474.03502484319307 1982156.4115608549 0.011117411667877516 0.09849130005212543 55518.774874212555 -4.7444398740311 -0.14149528933154165 EILKEQENR ddPTM_BT-474_Trastuzumab_2h_R1 2 EILKEQENR 9 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 ; 89.679 0.010893 373160000.0 436780.0 547220.0 525750.0 572570.0 536420.0 533830.0 647450.0 514890.0 846320.0 698480.0 False True 434428.4250108197 565433.8868985247 599771.0300990782 645057.303293076 604729.9073895628 496927.58860065154 616130.3700008134 553313.7063584435 637755.7761069877 653902.4084011867 0.6643627847663258 0.8647068425409681 0.9172179554523104 0.986473355971058 0.9248014682621336 0.7599415175968783 0.9422359699014916 0.8461716905299584 0.9753072750814942 1.0 19.318715811350415 4.733401118676936 2.9245314158859985 0.908212729536515 0.6241635731472565 0.5521599644661481 0.06815347398084068 0.2980430505819785 3.693342772579519 0.016423259595272147 0.1983851232420548 54125.399970184364 -4.733401118676936 -0.28404915638925854 EILNFFQGYQYATEDGLIHTNDQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EILNFFQGYQYATEDGLIHTNDQAR 25 0 Q6NXG1;Q6NXG1-3 Q6NXG1 ESRP1 Epithelial splicing regulatory protein 1 0 136.77 2.6432e-05 144530000.0 87084.0 86926.0 135800.0 81542.0 98292.0 165350.0 246130.0 418680.0 615390.0 400950.0 False True 86615.14941994192 89819.2793621233 154919.4596052399 91865.20883931043 110808.90357767217 153919.74369203264 234223.7515920922 449924.02761396207 463735.3803035246 375361.02772943507 0.23075157787125203 0.23928770630622356 0.4127212154718092 0.24473827076562682 0.2952062025404103 0.4100578704803098 0.6239959246939285 1.1986434242669246 1.2354382742094123 1.0 18.517919342985483 1.951411892861725 2.1925761289697294 1.1774702771969734 0.2973047265964996 0.9490970712612292 0.0867454463909061 0.0587973952391357 0.5208190767908901 0.04912597548963082 0.02511866067717945 89.41531129481407 -1.951411892861725 -0.8801655506004737 down EILQTYGYEHILTLHNLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EILQTYGYEHILTLHNLEK 19 0 A0A2R8YF87;Q96AX1;H3BMM5;A0A2R8Y5U3 A0A2R8YF87 VPS33A Vacuolar protein sorting-associated protein 33A 0 161.04 1.7529e-11 208990000.0 58492.0 91754.0 80785.0 106460.0 103540.0 98755.0 92460.0 63548.0 81146.0 89321.0 False True 58177.0855710721 94807.9764235357 92158.82580419231 119937.82508441033 116725.20527033899 91928.29929426494 87987.35656849993 68290.2744502055 61148.65560069198 83620.45730844465 0.6957279049130114 1.1337892601307413 1.1021086079959215 1.4343119966685243 1.3958929313168342 1.0993517884645831 1.0522228579060198 0.8166694687916878 0.7312643050388665 1.0 16.35156831284804 1.9290753352105556 2.566900871472911 0.8293628650491373 1.1653721863252362 0.2993026212298041 0.1986905064978687 0.33693180350346186 4.038588686377563 0.11368196256473186 0.05964030338309471 84.93277915265101 -1.9290753352105556 0.33600932127609895 EILSDDKHDWEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EILSDDKHDWEQR 13 1 Q7Z460;C9J151;C9JP76;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 0 ;; 202.25 5.7318e-08 638050000.0 369125.0 409116.0 342797.0 332273.0 339804.0 444332.0 417333.0 375814.0 569100.0 460940.0 False True 367137.672013643 422733.17874415545 391059.83795506257 374338.7277312815 383076.02522389666 413616.37468502176 397145.00842312025 403859.1490248248 428852.93054930377 431522.41456941137 0.8507962961321169 0.9796320294647356 0.9062329667052781 0.8674838550502879 0.8877314649023359 0.9585049599283112 0.9203345991178833 0.9358937922791566 0.993813799863047 1.0 18.71907597369798 1.3748154838430915 0.9662311814510997 1.0048611899961335 0.9066548844286195 0.47581377229273114 0.03613455850783934 0.4514775154737662 0.8665271436626144 0.03299984475459175 0.011914676107369937 23.703664079798695 -1.3748154838430915 -0.09820630556751397 EILSEVER ddPTM_BT-474_Trastuzumab_2h_R1 4 EILSEVER 8 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ;;; 172.11 0.00066417 2721000000.0 2638140.0 3132590.0 2741300.0 2931260.0 2609030.0 2797150.0 2947210.0 2544000.0 3554930.0 3010260.0 False True 2623936.5473649087 3236856.364459355 3127251.2121932604 3302357.2154511437 2941274.5055676303 2603789.6042828523 2804642.1928644646 2733846.1981702494 2678865.135121487 2818142.6295867544 0.9310872060970443 1.1485779074758895 1.1096852158443922 1.1718204681270492 1.043692563565859 0.9239381913983061 0.995209455837844 0.970087947099801 0.9505782663364734 1.0 21.426313199350094 2.9769985528680016 7.01555006961353 0.9699145757511596 1.0974423360263355 0.4551600761029103 0.06325819873191414 0.15286355818984576 31.95259022675109 0.018454419697570383 0.020327479279670282 948.4153030387326 -2.9769985528680016 0.12752776027517587 EILSPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EILSPLR 7 0 A0A140T9S5;Q9Y334-2;Q9Y334 A0A140T9S5 VWA7 von Willebrand factor A domain-containing protein 7 0 ;;; 114.54 0.013684 929640000.0 821980.0 1014280.0 943620.0 1037120.0 952080.0 994700.0 979350.0 867130.0 1096520.0 960730.0 False True 817554.5510105633 1048039.696654793 1076473.4939079278 1168419.2856616909 1073321.744579722 925938.730271938 931975.099019687 931839.6437969211 826297.338615221 899415.3888776652 0.9089843926628253 1.1652454578997014 1.196859101167042 1.299087496289898 1.1933548812402084 1.0294895347825548 1.036200970702371 1.0360503670720116 0.9187049152520234 1.0 19.77862804297516 2.668458629661617 5.2410894869524345 1.0095780917931956 1.1638406398740035 0.36470849671653716 0.09755649739750794 0.2522735352087929 13.193459345556695 0.03317474416126397 0.03138356764821397 466.0780278887393 -2.668458629661617 0.15426254808080797 EILTLLQGVHQGAGFQDIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EILTLLQGVHQGAGFQDIPK 20 0 E9PGT1;Q15631;H7C1D4;Q15631-2 E9PGT1 TSN Translin 0 202.95 1.1094999999999999e-21 245360000.0 243000.0 261670.0 258720.0 221030.0 239030.0 273550.0 276800.0 233160.0 344590.0 287390.0 False True 241691.71499983798 270379.5277671445 295145.5271654468 249012.37533728383 269469.05365819123 254640.13236743613 263410.12652131455 250559.58316249 259670.41176943327 269048.5241530421 0.8983201664483287 1.0049470764364619 1.0969973840018539 0.9255296089103943 1.0015630247609533 0.9464468655571956 0.9790431943476475 0.9312802735166273 0.9651434163665052 1.0 18.037506867447945 EILVGDVGVTITDPFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EILVGDVGVTITDPFK 16 0 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ; 246.3 8.060199999999999e-20 110803000.0 222800.0 216570.0 198555.0 161877.0 192058.0 244390.0 231590.0 228310.0 281340.0 217427.0 False True 221600.46955540715 223778.40153067032 226509.8181290015 182370.6116023774 216515.44788304786 227495.89453217943 220387.10694028635 245347.65153468907 212007.5267628557 203550.6227113802 1.0886749772788478 1.0993746840459027 1.1127935405541636 0.8959472055311053 1.0636933702239313 1.117637919755971 1.0827139902823046 1.205339724666792 1.0415469328407154 1.0 17.635028109480178 2.8162773959892258 5.568817950642885 1.1098682051709137 1.048674411484515 0.02438214657037152 0.07640012191530716 0.5003915376091327 27.08302391321884 0.02405485791283946 0.025491283549958534 655.0544420016043 -2.8162773959892258 -0.061193793686398656 EILWRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EILWRPK 7 1 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ; 101.64 0.008124600000000001 3415900000.0 3850200.0 4401700.0 3959000.0 3766500.0 3976700.0 3968600.0 4282700.0 4060200.0 5484100.0 4597100.0 False True 3829470.950997437 4548207.923616161 4516392.787755121 4243338.513812057 4483109.173252443 3694260.0230795355 4075529.4394972324 4363192.741277842 4132617.0381750795 4303709.142224675 0.8898070999793227 1.056811176896843 1.0494186847906977 0.9859724190419125 1.0416849803504686 0.8583897984262703 0.9469806868478357 1.0138214728475863 0.9602454305354952 1.0 22.03714914878718 EIPFNEDPNPNTHS(ph)SGPSTPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIPFNEDPNPNTHSSGPSTPLK 22 0 Q86YS7;H0YFE9;Q86YS7-3 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 1 EIPFNEDPNPNT(0.195)HS(0.404)S(0.328)GPS(0.062)T(0.01)PLK 68.23100000000001 0.012824 197910000.0 107430.0 119840.0 110020.0 128690.0 100450.0 147840.0 132340.0 131720.0 178150.0 144080.0 True False 106851.60881659505 123828.80195519023 125509.85968901697 144982.1408051172 113241.71208620397 137620.16877792648 125938.20861210558 141549.61526060742 134247.31958769727 134884.69104690605 0.7921700230564896 0.9180345152151392 0.9304974398122838 1.0748598649694039 0.8395445858776089 1.0202801200772975 0.9336731072639716 1.04941201378727 0.9952746938569393 1.0 17.04136709104016 5.750061735553624 0.8104748877949156 0.9893466111748475 1.7091460589088543e-13 0.46615776295798694 0.06261946780114527 9.199455674925312 1.354217686695289 0.020031619626467618 11.993192437543916 562421.2684594797 -5.750061735553624 -0.9893466111746766 EIPFNEDPNPNTHSSGPS(ph)T(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EIPFNEDPNPNTHSSGPSTPLK 22 0 Q86YS7;H0YFE9;Q86YS7-3 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 2 EIPFNEDPNPNT(0.017)HS(0.343)S(0.371)GPS(0.443)T(0.826)PLK 62.677 0.067255 95314000.0 51327.0 48167.0 54329.0 48207.0 44728.0 66751.0 55429.0 51743.0 68221.0 62579.0 True False 51050.66113496578 49770.20947743361 61978.05096386657 54310.00125722494 50423.84567637361 62136.66048495241 52747.68751065731 55604.32540563015 51408.848664565245 58585.15464342264 0.8713924448212964 0.849536197017128 1.057913926166018 0.9270266774540694 0.8606932248156949 1.060621259142285 0.9003592775628066 0.9491197171717777 0.8775064088754935 1.0 15.838247514578581 EIPQAER ddPTM_BT-474_Trastuzumab_2h_R1 1 EIPQAER 7 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30 O60716-13 CTNND1 Catenin delta-1 0 82.45200000000001 0.056881 212510000.0 298400.0 300050.0 306330.0 352930.0 310440.0 350940.0 330700.0 293360.0 378510.0 350420.0 False True 296793.44755535707 310036.9828659445 349458.60133190855 397610.90181327204 349972.69387796096 326680.34382390097 314702.7776033191 315252.0128518957 285231.2822741472 328055.8955903441 0.9047038981612279 0.945073650659519 1.0652410337057037 1.2120218144464745 1.066808121976217 0.9958069591647857 0.9592962109002926 0.9609704233011649 0.869459400389275 1.0 18.32358212287982 2.391052831308877 2.750555370436075 0.9449748811507258 1.0439693690667444 0.2126518317169105 0.08227159329080087 0.45316619950604786 6.99613117074654 0.03515954387068724 0.028283554721915027 246.0666922588903 -2.391052831308877 0.09899448791601861 EIPS(ph)LSPTIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIPSLSPTIPR 11 0 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 EIPS(0.736)LS(0.26)PT(0.003)IPR 99.283 0.005130300000000001 154120000.0 89494.0 136560.0 138490.0 112830.0 116260.0 133740.0 96027.0 102010.0 134930.0 122870.0 True False 89012.17424771814 141105.31704773684 157988.18822334087 127114.26643127933 131065.0218729924 124494.86859009635 91381.80715123664 109622.50419628422 101678.30946936853 115028.3314057006 0.7738282661318936 1.2267005469292924 1.3734719637558026 1.1050692023250523 1.1394151360044595 1.0822974398455596 0.7944286945181918 0.9530043847167509 0.88394144491893 1.0 16.811629714254497 2.3950309043768128 5.967646195932471 0.906166448912375 1.139383835389447 0.321125998155661 0.14880741678942863 0.23248447398694677 13.234223150218215 0.05216751459265529 0.0434850054094111 248.33098112285745 -2.3950309043768128 0.23321738647707202 EIPSATQS(ph)PISK ddPTM_BT-474_Trastuzumab_2h_R1 4 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 EIPSATQS(0.999)PIS(0.001)K;EIPSATQS(0.999)PIS(0.001)K;EIPSAT(0.003)QS(0.997)PISK;EIPSAT(0.011)QS(0.988)PISK 218.21 3.6556e-11 3961680000.0 5645790.0 4557240.0 4326220.0 3914560.0 4017490.0 6131100.0 5459310.0 5275910.0 8206400.0 6561600.0 True False 5615393.693946238 4708924.978490247 4935314.171821659 4410142.894631124 4529093.537971168 5707271.488056985 5195222.318710541 5669625.194728143 6184042.680126177 6142833.070331617 0.9141374394605019 0.7665721865751496 0.8034263857271364 0.7179330520848819 0.7372971861868725 0.9290943482774604 0.8457371800972739 0.9229658579053771 1.0067085674187684 1.0 22.550472748348465 1.7954104102244404 0.967638527587669 1.007948043825304 0.791039646677135 0.6161783492199469 0.06194475204660735 0.35229620349675567 0.6125630960659799 0.05389146394407655 0.022799853434729463 62.432454628259045 -1.7954104102244404 -0.2169083971481689 EIPSHVLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 EIPSHVLSK 9 0 E5RHG8;Q15369-2;Q15369 E5RHG8 TCEB1 Transcription elongation factor B polypeptide 1 0 ;;; 152.34 8.0702e-05 2669320000.0 3939920.0 4487570.0 4172080.0 4106780.0 3958440.0 4667540.0 4778950.0 4300660.0 5519310.0 4945880.0 False True 3918707.908486261 4636936.05465665 4759472.599630552 4626697.926922359 4462523.87048794 4344883.946007318 4547773.931138136 4621597.087508984 4159150.00546491 4630229.7040190995 0.8463312101092462 1.0014483840038713 1.0279128474985308 0.9992372350137024 0.9637802346208464 0.938373304079472 0.9821918612786337 0.9981355964904673 0.8982599722546624 1.0 22.14265233616367 4.74419781482911 24.698794414300203 0.9801749628677183 0.84633114168873 0.5571923814919556 0.035412923563065316 393.38433236404853 1723511.8070197087 0.008516835021867323 0.07465514328767696 55487.839445716505 -4.74419781482911 -0.1338438211789883 EIPSLS(ph)PTIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIPSLSPTIPR 11 0 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 EIPS(0.05)LS(0.946)PT(0.004)IPR 176.62 8.8547e-06 191240000.0 94585.0 137280.0 129060.0 119980.0 117180.0 138520.0 124220.0 109670.0 135200.0 125760.0 True False 94075.76486938144 141849.28181248746 147230.5261903702 135169.45569817338 132102.1784197251 128944.43844100625 118211.00403351762 117854.13229297604 101881.77158718306 117733.8891314472 0.7990542533114489 1.2048296616967777 1.2505365046251948 1.1480930146396486 1.1220403861137724 1.095219391733868 1.0040524856996589 1.001021313085093 0.8653563756263448 1.0 16.845170127392493 2.0417039483775756 1.5329088123098025 0.9448127586017218 1.1214000875312005 0.24241584645003655 0.11842192791669003 0.533965511266206 2.354337762193761 0.07608369001143032 0.03796471811110709 110.07886636415803 -2.0417039483775756 0.1765873289294787 EIPYTFEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIPYTFEDR 9 0 P34897-3;P34897-2;P34897;H0YIZ0;G3V2Y4 P34897-3 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase 0 ;;; 212.58 7.6449e-06 1311880000.0 757733.0 888760.0 939916.0 786583.0 988520.0 1393130.0 824207.0 760605.0 1151270.0 957590.0 False True 753653.4497200501 918341.8393332338 1072248.0029036724 886164.3271498283 1114402.1625829204 1296826.2021752724 784336.9586335012 817365.2073739314 867554.9347276344 896475.7863659536 0.8406846689916045 1.02439112500285 1.1960702332521964 0.9884977827924111 1.2430923171950639 1.4465825200167652 0.874911481784656 0.9117538028408855 0.9677393945512397 1.0 19.773905091148396 EIQGHQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIQGHQPR 8 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;; 167.04 0.00031497 243510000.0 477690.0 599280.0 559790.0 622340.0 623110.0 619900.0 565130.0 541380.0 606010.0 537070.0 False True 475118.1701163488 619226.6725275897 638603.5662180956 701128.1801900422 702459.3650376757 577047.7720876392 537792.5028937522 581780.5246719378 456666.955617965 502793.73279123945 0.9449564287103364 1.231571979010115 1.2701104340997118 1.3944648361023853 1.3971124125553445 1.1476829054415245 1.0696086045230089 1.1570958162946987 0.9082590450815616 1.0 18.93960714144394 1.789109940624248 1.1729709220472626 0.9789279186858559 1.2480766503434122 0.37144846223962924 0.13060117021199322 0.5213666375936679 1.3345979346301309 0.11300587439958304 0.0456137561174424 61.53326229979976 -1.789109940624248 0.26914873165755626 EIQMDS(ph)PMLLADLPDLQDP ddPTM_BT-474_Trastuzumab_2h_R1 1 EIQMDSPMLLADLPDLQDP 19 0 Q13164-2;Q13164 Q13164-2 MAPK7 Mitogen-activated protein kinase 7 1 EIQMDS(1)PMLLADLPDLQDP 67.93 0.026287 7540300.0 10619.0 14580.0 12656.0 13442.0 13182.0 12000.0 11246.0 10199.0 14132.0 14264.0 True False 10561.828483881807 15065.286486203886 14437.85479207597 15143.755821760687 14860.649564164663 11170.46824496155 10701.988016108036 10960.101169472618 10649.35795909816 13353.659307975198 0.7909314024189589 1.1281766397324855 1.0811908900096963 1.1340528818730902 1.1128522318440044 0.836509902442263 0.8014273667830131 0.8207563871969479 0.7974861207323187 1.0 13.704947517871517 2.729667353973956 24.056272076647897 0.8345872745044086 1.0602795860324359 0.4538016703839165 0.10762646529853286 305.7582972189164 827073.9345359127 0.033434505615106275 0.03197672052621598 536.6206166224596 -2.729667353973956 0.22569231152802727 EIQNGNLHES(ph)DSESVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EIQNGNLHESDSESVPR 17 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 EIQNGNLHES(0.977)DS(0.023)ESVPR;EIQNGNLHES(1)DSESVPR;EIQNGNLHES(1)DSESVPR 259.93 2.0534e-27 1254850000.0 415132.0 652350.0 673930.0 507266.0 718510.0 817360.0 588580.0 451641.0 632870.0 616220.0 True False 412896.9754375011 674063.0753960981 768813.4860954301 571485.8235888458 810007.9895575752 760857.827058482 560108.1368060526 485344.7448065289 476907.6685235245 576892.312027516 0.7157262574471737 1.1684383052827845 1.3326811088769719 0.9906282536169206 1.404088722747514 1.3188905644875217 0.9709058781482552 0.8413090878274341 0.8266840423777002 1.0 19.13794251184569 2.050413909030012 6.503885542001172 0.8796617175534165 1.1671052567946023 0.29132964773460956 0.18984575912506652 0.2292178883823091 21.926045140660012 0.07267208420648671 0.05300769614715279 112.30883158059322 -2.050413909030012 0.2874435392411858 EIQTAVR ddPTM_BT-474_Trastuzumab_2h_R1 6 EIQTAVR 7 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880;Q96A08 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL;HIST1H2BA Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A 0 ;;;;; 191.44 0.0012232 24310410000.0 5985020.0 8564280.0 7540840.0 7842500.0 7637600.0 7151150.0 7403290.0 7049800.0 9074340.0 7269440.0 False True 5952797.317318237 8849336.882583417 8602524.725843735 8835359.69589035 8610203.088398118 6656807.832496408 7045164.579385771 7575891.874159045 6838090.496926322 6805498.115519297 0.8747041313175069 1.3003217005384717 1.2640551183500424 1.298267892506229 1.2651833770644003 0.9781514474768842 1.0352165939653906 1.1132016709964163 1.0047891250359324 1.0 22.698269330243672 2.741000359111765 24.99571061395511 1.0405503085825636 1.2150134119118274 0.3342093139947728 0.12127028551737626 260.0007350288591 2663770.6586268265 0.03756072376771915 0.03815317348037864 550.8081518604322 -2.741000359111765 0.17446310332926385 EIQVQHPAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIQVQHPAAK 10 0 P49368;B4DUR8;Q5SZX6;E9PRC8;Q5SZX9 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 101.39 0.0033619999999999995 2210100000.0 3932400.0 3948900.0 3636200.0 3489100.0 3607800.0 4513700.0 4134600.0 4007400.0 5376600.0 4521500.0 False True 3911228.395330716 4080336.749339544 4148145.3535830113 3930819.7022545156 4067231.9448940475 4201678.543106918 3934593.6022941777 4306452.537164874 4051608.972748883 4232933.998949093 0.9239993811152627 0.9639500049735162 0.979969296618579 0.9286276854849183 0.9608540898355173 0.9926161249266031 0.9295192420366148 1.0173682221915188 0.9571632758164368 1.0 22.013226563264897 7.999999994997217 0.09371574601121217 1.024501527425714 0.7881480873600512 0.26094895782232286 0.026209821568980735 188.46508304520546 1.261847724239696 0.39495639917243497 5.724849367169558 99999998.84806663 -7.999999994997217 -0.23635344006566295 EIRPALELLEPIEQK ddPTM_BT-474_Trastuzumab_2h_R1 6 EIRPALELLEPIEQK 15 1 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;;;;; 225.7 8.7875e-13 3100130000.0 3570500.0 3205340.0 2921320.0 2723630.0 2732090.0 3568310.0 3462390.0 3311940.0 4506330.0 3533640.0 False True 3551276.824719844 3312027.8042310523 3332616.4634313686 3068441.2787399245 3080005.467133866 3321641.128598231 3294900.968085744 3559093.7804905563 3395805.3532283357 3308120.0698985895 1.0735030016092217 1.001181255289982 1.007404928785892 0.9275483398140345 0.9310440377178583 1.0040872333572994 0.9960040441297372 1.0758659617211719 1.0265060764050302 1.0 21.657580168133116 1.9039896527204068 7.560733610218562 1.0414436604524067 0.9875415400724752 0.1656217342700005 0.04261760567975221 0.42294886019193867 29.45295262217961 0.01919344965663413 0.011961537224475951 80.16589632411343 -1.9039896527204068 -0.05390212037993147 EIRPVCR ddPTM_BT-474_Trastuzumab_2h_R1 7 EIRPVCR 7 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ;;;;;; 166.78 0.0010129 6381464000.0 1665534.0 2013437.0 1963197.0 1811813.0 1931373.0 1837598.0 1888911.0 1623369.0 2181748.0 1814158.0 False True 1656566.9500022253 2080453.0333966294 2239598.0731857754 2041188.3400306301 2177321.903405357 1710569.1755004032 1797537.158589243 1744513.0380807526 1644085.4393253978 1698376.8832611933 0.9753824173709399 1.2249654678540962 1.3186696635232922 1.2018465160166196 1.2820016127542329 1.0071787907380125 1.0583853185387473 1.0271648509081033 0.9680333355506193 1.0 20.695725209180218 2.7266115327701903 24.58685019463776 1.018765374713897 1.2085599262114823 0.5342595550865112 0.08769505434057 481.3277089110695 990394.7663893348 0.028468564126893952 0.0270354673464248 532.8580519973218 -2.7266115327701903 0.1897945514975854 EIS(ph)DDEAEEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EISDDEAEEEK 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 EIS(1)DDEAEEEK;EIS(1)DDEAEEEK 273.15 4.6034e-27 5020200000.0 9296100.0 5955000.0 4917900.0 4130400.0 4648100.0 6172100.0 6393300.0 6128900.0 8407800.0 5911400.0 True False 9246050.8304938 6153208.575126477 5610297.572846907 4653308.216500551 5240007.983552857 5745437.254560606 6084031.654222265 6586269.639923599 6335810.348747917 5534129.390995835 1.670732680290662 1.1118656866133088 1.0137633539929514 0.8408383483175509 0.9468531747881572 1.0381826749314127 1.099365631768772 1.1901184765646466 1.1448612602113057 1.0 22.39992494467171 4.738011423866013 3.6829070583221375 1.0429693471457422 1.7386867440881317 0.8031161551130763 0.09387162722320437 0.1336017284910559 3.384398009689373 0.027070161671267717 0.2546388206704782 54703.03520228155 -4.738011423866013 0.6957173969423895 EIS(ph)DDEAEEEKGEK ddPTM_BT-474_Trastuzumab_2h_R1 7 EISDDEAEEEKGEK 14 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK 295.49 3.4471e-43 5582190000.0 5045680.0 2725676.0 2362546.0 1812269.0 1906520.0 3330870.0 2982730.0 3199960.0 5361530.0 2964310.0 True False 5018514.619507748 2816398.477954065 2695171.9411820425 2041702.0695838712 2149304.0211706273 3100614.7969245883 2838443.9547648886 3438757.264267631 4040252.7723212233 2775125.1979265288 1.8083921486704084 1.0148725830670178 0.9711893154210757 0.7357153007400732 0.7744890294594665 1.1172882575680743 1.022816540632354 1.239135901629571 1.455881260903094 1.0 21.404121428481815 -0.17494112321244948 7.827991047364909 1.0000000052761524 1.101804446248059 0.009606185458015726 0.3026135231584339 0.0 0.0 0.29427039601633265 0.06936019750853323 0.6684345303024122 0.17494112321244948 0.10180444097190655 EIS(ph)LPEVS(ph)LLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EISLPEVSLLK 11 0 Q2M3G0-1;Q2M3G0 Q2M3G0-1 ABCB5 ATP-binding cassette sub-family B member 5 2 EIS(1)LPEVS(1)LLK;EIS(1)LPEVS(1)LLK;EIS(1)LPEVS(1)LLK 75.229 0.056519000000000014 2206780000.0 1152950.0 2670430.0 2307440.0 2484500.0 2338810.0 1824830.0 1877000.0 1646760.0 941540.0 2120710.0 True False 1146742.6453047884 2759313.648240973 2632307.4953719783 2799037.445258476 2636643.590287059 1698683.7972877675 1786202.3391636831 1769649.5932778444 709510.0829896185 1985364.4721688223 0.577598048811703 1.389827251832851 1.3258560492403857 1.409835566464425 1.3280400789114435 0.855602999398955 0.8996848509193007 0.8913474669689592 0.357370192191737 1.0 20.920972450204985 2.6704783344090246 5.47628199538064 0.8060420456691896 1.2339931308576773 0.34930924878130065 0.27564854449563825 0.24459779090706932 14.140222904414403 0.08898517810206648 0.08416421041547524 468.2505912360439 -2.6704783344090246 0.4279510851884877 EIS(ph)SS(ph)PTSK ddPTM_BT-474_Trastuzumab_2h_R1 6 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 EIS(0.96)S(0.041)S(1)PTSK;EIS(0.961)S(0.04)S(0.999)PT(0.001)SK;EIS(0.768)S(0.233)S(0.997)PT(0.001)SK;EIS(0.988)S(0.013)S(0.984)PT(0.015)SK;EIS(0.997)S(0.01)S(0.984)PT(0.008)S(0.001)K;EIS(0.998)S(0.035)S(0.965)PT(0.002)SK 197.73 4.0239e-05 13838000000.0 22054700.0 18686000.0 15035700.0 15818700.0 16062400.0 17409000.0 20254200.0 20288900.0 28957400.0 20910800.0 True False 21935959.94570755 19307952.21407448 17152595.86735277 17821345.798072133 18107851.430696294 16205556.806377964 19274426.96744222 21802960.742946647 21821236.779280283 19576254.84136342 1.1205391492635364 0.9862944863834715 0.8761939403807919 0.9103552207757701 0.9249905856576571 0.8278170128913842 0.9845819398875286 1.1137452449218395 1.1146788267781105 1.0 24.222601451696633 1.9015017071505893 4.866324111068098 1.0840265850293003 0.9357568740851852 0.36733487157207556 0.07861997949332707 0.22671768755308935 8.339482384435124 0.03726282196420391 0.02191417937821015 79.7079623792149 -1.9015017071505893 -0.14826971094411512 EIS(ph)TPTHWSK ddPTM_BT-474_Trastuzumab_2h_R1 6 EISTPTHWSK 10 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 EIS(0.619)T(0.377)PT(0.004)HWSK;EIS(0.499)T(0.499)PT(0.003)HWSK;EIS(0.496)T(0.496)PT(0.007)HWSK;EIS(0.692)T(0.307)PTHWSK;EIS(0.498)T(0.498)PT(0.004)HWSK;EIS(0.72)T(0.259)PT(0.021)HWS(0.001)K 160.72 1.2312e-05 2333423000.0 1977277.0 2867540.0 2888990.0 2971670.0 2935480.0 3219040.0 3280340.0 3087790.0 3263430.0 3166550.0 True False 1966631.5603281276 2962984.335435463 3295734.6804487663 3347883.1173078134 3309295.9780468913 2996515.3416050887 3121657.422084281 3318216.5692799147 2459201.404221602 2964458.06798015 0.6634033996197163 0.999502866118902 1.1117494681563613 1.12934068910238 1.1163240977470457 1.0108138731902458 1.0530280241782066 1.1193332788615897 0.8295618787069544 1.0 21.499336959391428 4.726947337255172 3.5139079711119745 1.0582320493974355 0.6207564439993868 0.6380155665343397 0.08554353187999748 0.16025135833503856 3.5098255194186976 0.02004566120811415 0.18305934545860178 53327.02269785008 -4.726947337255172 -0.43747560539804875 EISDHVLR ddPTM_BT-474_Trastuzumab_2h_R1 6 EISDHVLR 8 0 P25205;P25205-2;J3KQ69;A0A499FHX9 P25205 MCM3 DNA replication licensing factor MCM3 0 ;;;;; 230.59 1.1172e-06 2110580000.0 1251320.0 1863060.0 1785220.0 1760330.0 1779580.0 1882110.0 1849530.0 1690180.0 1761790.0 1855920.0 False True 1244583.0321547228 1925070.8258564477 2036563.4585895906 1983187.5975092978 2006198.9646029538 1752004.1657103815 1760061.1680092746 1816309.8141601349 1327620.4612765047 1737473.596666947 0.7163176663761956 1.107971269059498 1.172140665905023 1.1414202790268078 1.1546644325712412 1.0083630445212572 1.0130002386140762 1.0453740520974948 0.7641097187452649 1.0 20.728559623564873 1.3397702845183481 8.742692441724486 0.882865004405249 1.0553856090534877 0.18734041246034072 0.1343492617442599 0.37290938299846876 28.30104084345358 0.08851858855343066 0.03230616408754738 21.866047365219416 -1.3397702845183481 0.1725206046482387 EISEVFPDQFIHLGGDEVEFK ddPTM_BT-474_Trastuzumab_2h_R1 3 EISEVFPDQFIHLGGDEVEFK 21 0 P07686;Q5URX0;H0Y9B6 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A 0 ;; 238.87 6.6209e-30 791275000.0 541040.0 521930.0 495007.0 428669.0 451568.0 560120.0 564000.0 516328.0 679520.0 492532.0 False True 538127.1007551949 539302.124536652 564699.6829220247 482938.45144757733 509072.5081467688 521400.22278065525 536717.1653107705 554859.0172204588 512061.40110149875 461098.18608213944 1.1670553409189375 1.1696036566940244 1.2246842428944837 1.0473657585838936 1.1040436148150088 1.1307791670379153 1.1639975638836288 1.2033424419536036 1.110525733038301 1.0 18.814714464768198 -2.740794614791233 1.101472158877891 0.01892136631005689 1.1498732498396513 0.44747939713786955 0.04884325589526293 25789.159395645904 1189.7261984003474 62182.43507146128 0.015212709499003173 0.0018163744539010584 2.740794614791233 1.1309518835295944 EISFAYEVLSNPEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EISFAYEVLSNPEKR 15 1 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 178.85 1.1138e-06 1559900000.0 951070.0 1056000.0 877510.0 795600.0 881870.0 1034900.0 1042200.0 1002700.0 1350500.0 1126400.0 False True 945949.5447938106 1091148.3216345191 1001055.7805463482 896322.8784252945 994170.9172469968 963359.798892559 991784.8044093716 1077526.5656074313 1017687.3707728605 1054512.1876404434 0.8970494185661803 1.034742257532416 0.949306980307446 0.8499881641300796 0.9427780246632662 0.9135596631160373 0.9405152600735421 1.0218246675920213 0.9650788134085188 1.0 20.008144338658546 1.826291298722475 7.081546225874086 0.9962693716801755 0.9333101161457198 0.2856572937098557 0.04576675185751683 0.3396754847559946 23.100382080563396 0.020583697890732493 0.012514453134738025 67.0334078605394 -1.826291298722475 -0.0629592555344557 EISGLWNELDSLKDAVEHQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EISGLWNELDSLKDAVEHQR 20 1 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2;G3V4Y7;B7Z6P3;H0YJV5 Q86UP2-2 KTN1 Kinectin 0 ; 145.75 8.4928e-08 129525000.0 82069.0 94242.0 96562.0 88122.0 74218.0 90007.0 101938.0 85811.0 111010.0 103271.0 False True 81627.14962272305 97378.78799950793 110157.09026805007 99278.23616464781 83669.22237544938 83785.02794368778 97006.8694990237 92214.65255942881 83653.07295778999 96680.15636524862 0.8443009681774126 1.0072262153943974 1.1393971049435092 1.026872937499024 0.8654229111851541 0.8666207326677849 1.0033793194597327 0.9538115785730678 0.8652558715539979 1.0 16.560932185991653 3.2617406199051397 24.960909875767502 0.9281677117175265 1.0142868207160374 0.175372033060202 0.08240944108113547 394.1592803253279 424439.3391773349 0.023647226908557608 0.03199855116906997 1827.008718882686 -3.2617406199051397 0.08611910899851083 EISLWFKPEELVDYK ddPTM_BT-474_Trastuzumab_2h_R1 3 EISLWFKPEELVDYK 15 1 Q32Q12;P22392-2;P22392 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 ;; 192.24 1.2964e-07 8842162000.0 7698970.0 5576510.0 5439230.0 4690940.0 4445630.0 6761770.0 5777300.0 5851630.0 10097940.0 6259890.0 False True 7657519.600955977 5762120.764278514 6205026.305365312 5284812.523027088 5011754.629186575 6294344.755394478 5497829.927570778 6288308.344575064 7609437.992463607 5860378.460838541 1.3066595702183181 0.9832335578296478 1.058809827186051 0.9017868996588493 0.8551929986565169 1.0740508991792728 0.9381356450457148 1.0730208614675871 1.298455047453505 1.0 22.482562405634532 -0.09536827583030183 8.159462801806542 0.999999999124279 1.0397462701090907 0.0035333393889426246 0.14402481389050653 0.0 0.0 0.13605005186835034 0.03206730475229736 0.8028450317507971 0.09536827583030183 0.03974627098481176 EISNFEYLMFLNTIAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EISNFEYLMFLNTIAGR 17 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;H0YAC6;A0A3B3IS13;A0A3B3IU76;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9;Q8NFP9-3 A0A494C1L5;Q5T321 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin 0 159.02 7.5976e-09 54841000.0 19482.0 27659.0 26137.0 33485.0 30626.0 29868.0 31105.0 27000.0 37431.0 25693.0 False True 19377.11107665369 28579.613094781413 29816.862413123414 37724.19756670558 34526.0395654762 27803.29546170929 29600.332317360877 29014.877103221952 28206.631599703018 24053.25074311602 0.805592195566305 1.188180899122786 1.239618824563949 1.56836171416465 1.4354001433821775 1.1559059421382587 1.2306167109588053 1.2062767487478148 1.1726744089996104 1.0 14.553944263733886 -2.9926063841390573 10.365706223011696 1.0354309157264394 1.2225517690692598 0.0 0.19924996922835067 0.0 0.0 0.0 0.04457858457096102 0.0010171701711479708 2.9926063841390573 0.18712085334282036 EISSS(ph)PTSK ddPTM_BT-474_Trastuzumab_2h_R1 6 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 EIS(0.001)S(0.123)S(0.865)PT(0.009)S(0.002)K;EISS(0.007)S(0.973)PT(0.016)S(0.004)K;EISS(0.004)S(0.99)PT(0.005)S(0.001)K;EISSS(0.999)PTSK;EISS(0.003)S(0.997)PTSK;EISS(0.006)S(0.993)PT(0.001)SK 211.37 5.5152e-06 11999220000.0 14961600.0 14917400.0 13256100.0 12462600.0 13056200.0 13965300.0 16131000.0 14982000.0 19996900.0 14924900.0 True False 14881048.407990014 15413916.641241256 15122443.65591325 14040363.882180834 14718829.67983968 12999911.681780126 15350681.903595848 16100032.917054515 15068931.939731814 13972380.104150238 1.0650331795346646 1.1031704352691376 1.0823097813823006 1.0048655832094349 1.053423222824272 0.9304006607949882 1.0986447397774566 1.152275617829227 1.0784799602793418 1.0 23.736074459617324 2.0506276960041885 24.999995405226084 1.1017452198435693 1.041267616307445 0.07820926455162203 0.057699438660997124 170.67220135858912 84277.25513049288 0.021910546116240263 0.016182008033040606 112.36413063895537 -2.0506276960041885 -0.0604776035361243 EIST(ph)PTHWSK ddPTM_BT-474_Trastuzumab_2h_R1 3 EISTPTHWSK 10 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 EIS(0.093)T(0.895)PT(0.012)HWSK;EIS(0.238)T(0.739)PT(0.023)HWSK;EIS(0.016)T(0.903)PT(0.079)HWS(0.001)K 152.55 0.00019932 2337640000.0 1593800.0 2140310.0 2005120.0 2112810.0 2156790.0 2446100.0 2375050.0 2235100.0 2445740.0 2300670.0 True False 1585219.157887826 2211548.9245052817 2287423.467184526 2380291.5293687102 2431444.4222041187 2277006.8645000355 2260159.757927918 2401894.51160783 1843020.1482369604 2153839.2708973167 0.7359969610115817 1.0267938533704617 1.0620214321895785 1.105138884563587 1.1288885178470853 1.0571851369166492 1.0493632410120866 1.1151688726555582 0.8556906604591413 1.0 21.038479162877962 4.741888715524726 3.6880602673270904 1.0586822744230677 0.6998443853812798 0.606497193914465 0.07418795471513662 0.16874497501223307 4.273381245493385 0.017183166027047878 0.16688402930976293 55193.59919911397 -4.741888715524726 -0.3588378890417879 EITALAPS(ph)TMK ddPTM_BT-474_Trastuzumab_2h_R1 2 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle 1 EITALAPS(0.994)T(0.006)MK;EITALAPS(0.966)T(0.034)MK 206.18 2.8595e-08 229810000.0 692350.0 566000.0 484170.0 474710.0 331670.0 674760.0 624590.0 520230.0 1005970.0 626730.0 True False 688622.4645273164 584838.9678457748 552336.9275189172 534808.2373268871 373906.2085378921 628115.4294141885 594376.1955344934 559052.2042744134 758062.1728073853 586731.5548294518 1.173658479519619 0.9967743562313993 0.9413792780916099 0.9115041332357563 0.6372696430935563 1.0705328940366363 1.013029196473443 0.9528245066637261 1.2920085285471565 1.0 19.162341057671227 1.2729264049428244 24.67780007231674 1.1460042658673921 0.9561610933151511 0.20259429233472448 0.14554023093975538 206.6097387002154 148364.9094003152 0.09682842902952492 0.035354162171974554 18.74676800515074 -1.2729264049428244 -0.18984317255224104 EITALAPSTMK ddPTM_BT-474_Trastuzumab_2h_R1 3 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle 0 ;; 175.43 2.2877e-05 2295060000.0 3252920.0 3527250.0 3286000.0 2996760.0 2655640.0 3528630.0 3635800.0 3047780.0 4598110.0 3528950.0 False True 3235406.6401533894 3644652.3839823487 3748640.2375759864 3376149.508735274 2993820.012788518 3284704.113601554 3459922.463895218 3275220.81991325 3464967.402017323 3303729.3897139058 0.979319507895157 1.1031933775598872 1.134669276862476 1.0219207176129035 0.9061940793667047 0.994241272856189 1.0472778050973595 0.9913707914790428 1.0488048484859045 1.0 21.65566408897905 3.491039946590353 24.528260963856457 0.9973069261454677 1.0759441668749778 0.2898910345027462 0.05199042884741088 602.4507614464939 1061669.692658805 0.014165816196725097 0.02098410942949588 3097.704214258466 -3.491039946590353 0.07863724072951017 EITTLANNQCMATESVDHELGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EITTLANNQCMATESVDHELGR 22 0 A0A1B0GV09;Q9H9B1-3;Q9H9B1;A0A0C4DGF8;A0A1B0GU48;Q9H9B1-4;A0A1W2PPZ7 A0A1B0GV09 EHMT1 Histone-lysine N-methyltransferase EHMT1 0 187.57 2.7931999999999996e-17 96122000.0 20478.0 30006.0 29072.0 32864.0 31505.0 31845.0 32930.0 29839.0 31230.0 28481.0 False True 20367.7487233197 31004.731570989974 33165.08490164608 37024.57903037816 35516.97500523503 29643.63010506671 31337.050095183848 32065.737699371846 23533.784960560126 26663.318196189128 0.7638864965513097 1.1628234469114704 1.2438468707314239 1.3885960763754424 1.3320538255554148 1.1117757319981105 1.1752869565822726 1.2026161734046614 0.8826277655090846 1.0 14.702568711637968 1.2445889382055166 24.968464365206668 0.9413138481553218 1.1858940021440196 0.2465954499715992 0.1603763571996448 172.1437065214791 713018.1949829581 0.11546685570275624 0.03972119823676102 17.562605180781215 -1.2445889382055166 0.2445801539886978 EIVEHLLDHGAEVNHEDVDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EIVEHLLDHGAEVNHEDVDGR 21 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 0 183.54 1.4865999999999998e-17 29474000.0 14609.0 17440.0 16405.0 18752.0 16770.0 15990.0 17684.0 7004.4 16007.0 12022.0 False True 14530.346767212492 18020.47985729737 18714.681405183816 21126.00127731413 18905.560096422505 14884.648936411266 16828.55736055971 7527.103895622516 12062.28933281095 11254.745667447969 1.2910417699831747 1.601145009381944 1.6628257943946412 1.877074960335775 1.6797856348813762 1.3225220165980334 1.495241017238874 0.6687937798002057 1.0717513917438963 1.0 13.45824583496814 1.8358675639315416 5.77654502229166 0.8962027921568693 1.5803976378085065 0.7151484256643204 0.1874771405554511 0.11742918168134638 5.417267166267853 0.08857894491972682 0.05234724316647885 68.52792218972412 -1.8358675639315416 0.6841948456516372 EIVHLQAGQCGNQIGAK ddPTM_BT-474_Trastuzumab_2h_R1 7 EIVHLQAGQCGNQIGAK 17 0 P68371;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0QZL7;M0R2T4;P04350;M0QYM7;M0R042;M0R278 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 ;;;;;; 272.95 1.1982999999999993e-35 25834550000.0 13275460.0 12389920.0 11753190.0 11447130.0 12187020.0 14669480.0 14471910.0 13049640.0 16861720.0 15281600.0 False True 13203986.398402251 12802310.997335201 13407936.991441172 12896335.484299323 13738964.758873165 13655413.375841554 13771848.42523512 14023470.40152925 12706375.041472152 14306315.204764009 0.9229480973553077 0.8948713078174054 0.9372040808227351 0.9014435443170467 0.9603426572272141 0.9545024823229322 0.962641199227114 0.9802293742877571 0.8881654611692691 1.0 23.770148797466526 3.229600694561863 24.916665840309022 0.9584855181201143 0.9143911768554913 0.35319028130545127 0.028844511022386252 194.3535771824066 540477.1541527029 0.00789290391779506 0.009564662654473095 1696.6829458286168 -3.229600694561863 -0.04409434126462297 EIVLADVIDNDSWR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIVLADVIDNDSWR 14 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;;; 307.03 1.7585e-44 1504100000.0 1288100.0 1523620.0 1372820.0 1417080.0 1433170.0 1466330.0 1557310.0 1267970.0 1644950.0 1527540.0 False True 1281165.0127213625 1574332.7706522618 1566101.1232346497 1596482.182703516 1615675.7044358863 1364966.058469538 1481976.965798081 1362592.3600211989 1239574.1137007172 1430051.0894072098 0.8958875820670407 1.1008926760126172 1.095136484867709 1.116381221992073 1.1298027856512611 0.9544876183656831 1.036310504411696 0.9528277486827592 0.8668040763596426 1.0 20.447635258368262 2.1132185894987074 1.352149202406309 0.935908665589132 1.068197921459911 0.3012454629634044 0.07551656960673894 0.5037977584459773 1.743025726359657 0.04953738053902269 0.025609731238438984 129.78323327856475 -2.1132185894987074 0.1322892558707791 EIVRPDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EIVRPDPK 8 1 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 0 ; 69.825 0.048261 509510000.0 290210.0 287710.0 204562.0 273330.0 264440.0 336960.0 397380.0 310690.0 527930.0 431710.0 False True 288647.54160536185 297286.25342563196 233362.55151522162 307933.54997484345 298114.8665413221 313666.7483185206 378157.2112609824 333875.2654518529 397828.72539956763 404157.89819447394 0.7141949789794027 0.7355695750441152 0.5774044069353595 0.7619139731043213 0.7376197963051417 0.7760995138775921 0.9356670077471047 0.8261010534333236 0.9843398512730269 1.0 18.624559516021773 2.1288081465529616 0.6215218888993951 0.9931206970004711 0.6760501216923183 0.7767590901435745 0.05972845374225613 0.35440750881268523 0.2711475847957113 0.052701173943856504 0.035182763973991074 134.52659395872308 -2.1288081465529616 -0.31707057530815286 EIVVIHQDPEALK ddPTM_BT-474_Trastuzumab_2h_R1 4 EIVVIHQDPEALK 13 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;; 196.11 1.4445999999999998e-07 2758120000.0 4068970.0 3882250.0 3364700.0 3285130.0 3396170.0 4025120.0 3806430.0 3890790.0 5349190.0 4121950.0 False True 4047063.1176250633 4011468.344380317 3838420.513503325 3701027.121168034 3828652.118823326 3746872.9285133067 3622298.4389253207 4181140.506831294 4030953.799973698 3858883.6220210562 1.0487652684134199 1.0395411567968835 0.9946971428728878 0.9590927023680631 0.9921657385505975 0.970973290599242 0.9386907701114277 1.0835103922210172 1.0445906626908126 1.0 21.87975210440188 -0.9126742199125644 4.553198896024468 0.9999999100179802 1.008037876133741 0.0030738379898521684 0.04323392028269179 2961721.0823419257 650471.6810374126 2.6339112694191296 0.010904017767907476 0.12227165203724889 0.9126742199125644 0.008037966115760797 EIVVLETLEDIDK ddPTM_BT-474_Trastuzumab_2h_R1 3 EIVVLETLEDIDK 13 0 Q15293;Q15293-2;E9PP27 Q15293 RCN1 Reticulocalbin-1 0 ;; 208.72 1.0152e-07 57143000.0 138659.0 143352.0 119539.0 106720.0 111541.0 138888.0 138830.0 131237.0 177144.0 134088.0 False True 137912.4753504631 148123.38466188617 136369.05214838573 120230.74105775182 125745.08519469669 129286.99946718496 132114.2625178979 141030.5713479829 133489.23480798776 125530.38904148752 1.0986381576885205 1.1799802883820563 1.0863429420529882 0.9577819520499997 1.0017103121789752 1.0299259044314433 1.0524484431752572 1.123477529424151 1.0634017454042133 1.0 16.937677135921707 4.0024734055042615 22.29308208244474 1.0410487614129145 1.1377724775952867 0.4612245368885606 0.04585487827165315 20.469881188973385 184454.9126959584 0.012937339465265828 0.027582000832729076 10057.114752782076 -4.0024734055042615 0.09672371618237219 EIVWLER ddPTM_BT-474_Trastuzumab_2h_R1 4 EIVWLER 7 0 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 0 ;;; 110.81 0.015635 1014800000.0 664000.0 824940.0 748410.0 776420.0 787040.0 798380.0 766180.0 676660.0 833590.0 750120.0 False True 660425.0977773356 852397.6292132396 853779.6227036648 874714.692391864 887264.8788484416 743189.8697843666 729116.9463081673 727155.8052098588 628162.9140337277 702246.6993899583 0.9404459976117322 1.2138150737535933 1.215783033861666 1.2455945939678017 1.2634660719932307 1.0583031154578235 1.0382632583984392 1.0354705915193891 0.8945046157987112 1.0 19.42161841303387 2.530543118412733 4.062758441547813 1.0040537800104234 1.1838167252872858 0.4654715144389949 0.09270699587085102 0.20880784756749296 7.075836088903457 0.03211658739032235 0.02911636327562018 339.2681717075579 -2.530543118412733 0.17976294527686232 EIYDDLQALHTDDPLTWDYVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIYDDLQALHTDDPLTWDYVAR 22 0 Q9NYH9 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog 0 ; 155.76 1.681e-08 99589000.0 59836.0 78509.0 60144.0 72379.0 65517.0 70462.0 72861.0 63574.0 77609.0 71475.0 False True 59513.84962440455 81122.12460530733 68611.7524189804 81542.17397881388 73860.2016003169 65591.12778970675 69336.43507395053 68318.21470223086 58483.301857320155 66913.40430717384 0.8894159584408414 1.2123449022696062 1.0253812839055398 1.2186224094126934 1.1038177232958133 0.9802389890163558 1.0362114406203797 1.0209944540948488 0.8740147428285922 1.0 16.030007624652345 2.741042089087726 23.766767454405965 0.9911767844821316 1.100283086433219 0.23063082210867947 0.09669095576864833 161.220040635438 1544117.2469572895 0.028555959180471473 0.02898873994576038 550.8610798072916 -2.741042089087726 0.10910630195108728 EIYDDSFIRPVTFWIVGDFDSPSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIYDDSFIRPVTFWIVGDFDSPSGR 25 1 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ; 177.24 2.8391e-17 214434000.0 138500.0 183725.0 152923.0 187364.0 167683.0 179234.0 189446.0 166244.0 208681.0 162982.0 False True 137754.33138879648 189840.175560892 174453.229169456 211084.26318913637 189036.43611499207 166843.9754514534 180281.7732260007 178649.97144992696 157254.36373213725 152580.3492240898 0.9028314071196755 1.244198066961296 1.1433531910013013 1.383430200956768 1.2389304197840079 1.093482721070556 1.181553025293098 1.1708583206055556 1.0306331354713503 1.0 17.219209644325666 1.203599957375822 3.783692013567707 1.0017117261173236 1.1796247117787866 0.21978640948051598 0.1160301504999469 0.3091384296605251 8.338034414139747 0.10314643041532119 0.02837234566847006 15.980853026277286 -1.203599957375822 0.17791298566146296 EIYENMAPGENKR ddPTM_BT-474_Trastuzumab_2h_R1 4 EIYENMAPGENKR 13 1 Q13200;C9JPC0;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;;; 165.73 5.5858e-05 2158380000.0 1741580.0 1651300.0 1506030.0 1385960.0 1425460.0 1829950.0 1725300.0 1532400.0 2063700.0 1584870.0 False True 1732203.5267877283 1706262.5222680706 1718065.9333525735 1561422.3938943208 1606983.8816366387 1703449.8637389473 1641840.6477139592 1646755.469369531 1555128.7871632357 1483722.2397245273 1.1674715660454984 1.1499878323485 1.1579431023906168 1.0523683962466044 1.0830759549273834 1.1480921550756127 1.1065687389162466 1.1098812333467973 1.0481266274285717 1.0 20.50078960678265 -4.9999999999389315 0.0649113437887708 0.5813000118643843 1.27798212662935 0.6252231610524113 0.03242469440916302 254.7815323791612 1.2003588977282071 16.365705690274794 2.3687168282871003 1.0000000001406153e-05 4.9999999999389315 0.6966821147649658 EIYLEVIHNLPDFELLSANTLEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EIYLEVIHNLPDFELLSANTLEDR 24 0 Q8IXB1-2;Q8IXB1 Q8IXB1-2 DNAJC10 DnaJ homolog subfamily C member 10 0 ; 186.55 2.0983000000000003e-17 218540000.0 111275.0 172258.0 144065.0 165217.0 166747.0 150194.0 133862.0 134319.0 148290.0 152158.0 False True 110675.90776381461 177991.50339784025 164348.09976457196 186133.4552599193 187981.24206309862 139811.44229864614 127386.58365750081 144342.56583806197 111745.91648419657 142447.14617098222 0.7769612150107105 1.2495266362457933 1.1537479281424254 1.3066843405658652 1.3196560767701229 0.9814969696256857 0.8942726272985216 1.0133061259423524 0.7844728342262868 1.0 17.12006719300125 2.5688078929722846 6.672872299835522 0.9331659600278976 1.1732690994677528 0.35393370230195753 0.15397863701111644 0.27372428019317824 16.87683446607458 0.04962329787704528 0.04658229223608966 370.5167901019196 -2.5688078929722846 0.24010313943985517 EKAEAQQVEALPGPSLDQWHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKAEAQQVEALPGPSLDQWHR 21 1 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F5H7X4;Q66PJ3-7;F5GYV5;F8WCT1;Q66PJ3-2;Q66PJ3 H7BZV4;F5GYV5;Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 0 ;; 108.5 0.00019117 600854000.0 655820.0 651450.0 648730.0 627760.0 654090.0 776410.0 737890.0 668050.0 937730.0 835580.0 False True 652289.1379884513 673133.1194401587 740065.5451377562 707234.3516343179 737384.4844048291 722738.6041725491 702195.4416864619 717903.2832891647 706639.0064382335 782252.5690239717 0.8338600137834283 0.8605061154098056 0.946069817400724 0.9040997494156457 0.9426424579530303 0.9239197578786107 0.8976582110335563 0.9177384795104009 0.9033386842307436 1.0 19.577274965917784 -4.999999984284583 0.012673673039871356 2.0492450684249848 8.495712847918665e-09 0.5319009767363017 0.02990854208944953 7210.650931016646 6.937405526901945 678.1778882855963 462.65712643953066 1.0000000361860865e-05 4.999999984284583 -2.0492450599292718 EKAEELAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKAEELAAR 9 1 A0A087WTZ5;Q04323;E9PJ81;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 0 ;;; 148.32 8.2347e-05 1714410000.0 1878630.0 2041330.0 1844610.0 1800560.0 1731230.0 2112890.0 2224320.0 1963080.0 2747410.0 2216850.0 False True 1868515.6648154166 2109274.4350399547 2104315.0543624572 2028510.7113844226 1951691.8786958558 1966830.887508068 2116721.143872435 2109574.997918256 2070347.6189078619 2075368.7350592273 0.9003294851900583 1.0163371931975065 1.013947554867836 0.977421832138438 0.940407285570946 0.9477018971532006 1.0199253309133174 1.0164820170416862 0.9975806149208362 1.0 20.984936255171807 2.2270293468968676 24.988084796344108 1.010937977443324 0.9698431631461347 0.2815663315694694 0.03280664013491317 310.0031503127687 671766.6540883969 0.012633508403144643 0.009409689480146352 168.66669959135396 -2.2270293468968676 -0.04109481429718931 EKAEGDVAALNR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKAEGDVAALNR 12 1 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3 P67936 TPM4 Tropomyosin alpha-4 chain 0 ;;;; 197.38 1.7835e-07 4721930000.0 4194910.0 3975910.0 3467020.0 3411270.0 3382990.0 4543470.0 4469310.0 3920790.0 5799900.0 4666250.0 False True 4172325.0706583154 4108245.7608616496 3955146.280121941 3843136.4322346053 3813793.723947311 4229390.613077952 4253112.400877809 4213379.259168209 4370592.3596782815 4368445.93002238 0.9551051191875322 0.9404364450587586 0.9053897755583936 0.8797491130249416 0.8730321457653414 0.968168241252853 0.9735984991019494 0.9645030124355053 1.0004913485688698 1.0 22.05868870309904 2.599397786475919 6.253062452422581 0.978503969118789 0.9105454825868341 0.660138330828079 0.025382780947320216 0.17067562457285868 8.043851594821064 0.009111089653847654 0.008559321099811574 397.5555186499681 -2.599397786475919 -0.06795848653195491 EKALEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKALEHK 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 52.58 0.087032 111470000.0 155100.0 151800.0 145650.0 138670.0 142140.0 168210.0 171300.0 141210.0 256210.0 193720.0 False True 154264.95883323014 156852.5712349621 166156.25398750536 156225.60778184462 160240.68647021425 156582.0386237487 163013.56457045226 151747.8072498508 193070.47853810777 181356.62374796407 0.8506166229010531 0.8648847116438609 0.9161851966235154 0.861427636626911 0.8835667711420611 0.8633929954571428 0.8988564145139599 0.8367370549461629 1.0645901679688454 1.0 17.46846991273551 1.2378075392070975 24.99999949346731 1.032295138398669 0.8724952982765968 0.8575392438608926 0.02613973251268553 6.211581839360308 206139.19212681206 0.019430379076540587 0.005944123322872704 17.29049948209534 -1.2378075392070975 -0.15979984012207216 EKAPSIIFIDELDAIGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKAPSIIFIDELDAIGTK 18 1 P17980;E9PM69;E9PKD5;R4GNH3;E9PN50;E9PMD8 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 179.78 7.4701e-14 140250000.0 399690.0 363930.0 351900.0 328370.0 291430.0 399910.0 409630.0 421960.0 582890.0 442090.0 False True 397538.1134497335 376043.1900496691 401444.4612303681 369941.6083314651 328541.8830590586 372265.1629868809 389814.6319614382 453448.797869464 439244.5698258366 413875.4377077089 0.9605259873635861 0.9085902563641429 0.9699644498204798 0.8938477006038924 0.7938182678313096 0.8994618406173347 0.9418646202356585 1.0956165951304966 1.0612965395062754 1.0 18.658837105829928 1.884243014268959 4.36851312455763 1.0590231926446427 0.9031892188683284 0.6365573866777616 0.049866174786683835 0.1434573590577039 4.236751503016043 0.02506305425319863 0.014337760008995172 76.60251248193303 -1.884243014268959 -0.15583397377631436 EKASATR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKASATR 7 1 Q9H993;F5GZY1 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 58.981 0.096935 29961000.0 39646.0 46188.0 40746.0 33881.0 39096.0 28032.0 40874.0 41069.0 60513.0 51071.0 False True 39432.55034108471 47725.33965876442 46482.68262941905 38170.33112610283 44074.64385985297 26094.21382023019 38896.76846615686 44133.77732415638 45600.38198265688 47811.60505591713 0.8247485164944189 0.9981957226273449 0.972205023760573 0.7983486662173642 0.9218398714769424 0.5457715504365982 0.8135424113176268 0.9230766729654982 0.9537513314879483 1.0 15.54507321793415 1.5378990312639327 3.5370121132084402 0.9698675681636593 0.8413124693651015 0.1849980324594157 0.11823484892981556 0.3897691346615277 10.777846326565147 0.08344869335829583 0.03312752551596916 34.50635065032658 -1.5378990312639327 -0.12855509879855775 EKDDANFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDDANFK 8 1 Q5VTR2;H3BP71;O75150-4;O75150;O75150-3 Q5VTR2;H3BP71 RNF20;RNF40 E3 ubiquitin-protein ligase BRE1A;E3 ubiquitin-protein ligase BRE1B 0 75.294 0.035351 443440000.0 888040.0 720020.0 613920.0 553160.0 592950.0 885320.0 799260.0 823410.0 1213400.0 879130.0 False True 883258.8913105195 743985.4304387193 700354.5997117002 623189.999283228 668458.6678100013 824119.9122191136 760596.7403302955 884857.0353912591 914373.8287269819 823023.1707389408 1.0731883654229284 0.903966567272634 0.8509536846731737 0.7571961779930263 0.8121990869465245 1.0013325766748318 0.9241498506626532 1.0751301626135283 1.110994029373466 1.0 19.650573522142768 2.049904126882312 1.5623529406375116 1.0694575444606587 0.8796125289175376 0.39961360481121055 0.08856277674472823 0.38477750106024017 1.7659792829254202 0.05902838173841639 0.029809010989215137 112.17707893208144 -2.049904126882312 -0.18984501554312105 EKDECT(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKDECTPTR 9 1 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 EKDECT(0.951)PT(0.049)R;EKDECT(0.951)PT(0.049)R;EKDECT(0.996)PT(0.004)R 101.39 0.025583 1543830000.0 2602180.0 2135110.0 1908170.0 1929260.0 1896110.0 2295360.0 2129750.0 2206980.0 3459700.0 2514460.0 True False 2588170.1520093754 2206175.8456487474 2176823.7498890334 2173504.1181885167 2137568.369375534 2136687.1658962476 2026725.8560649205 2371676.0544173643 2607103.292604863 2353985.0100624906 1.099484551068007 0.9372089610673352 0.9247398520312777 0.9233296341724866 0.9080637133363855 0.9076893679282714 0.8609765344304879 1.0075153598171827 1.107527567703438 1.0 21.16667370279426 1.5224816055705765 5.8532735992869105 1.0552497470931417 0.9339459612671669 0.3611365466312416 0.06336056697772677 0.1366343253836828 10.055717258086924 0.03569068807498561 0.016023962995282706 33.302865666820054 -1.5224816055705765 -0.12130378582597479 EKDECT(ph)PTRK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKDECTPTRK 10 2 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 EKDECT(0.962)PT(0.038)RK;EKDECT(0.805)PT(0.195)RK;EKDECT(0.995)PT(0.005)RK;EKDECT(0.964)PT(0.036)RK 148.08 4.1399e-05 9740320000.0 9602980.0 6451270.0 6485270.0 5501480.0 5824040.0 7998170.0 8583130.0 8651300.0 14846790.0 8991080.0 True False 9551278.622671388 6665996.622074936 7398339.6450226335 6197966.803920544 6565696.972210402 7445275.333567016 8167931.211159295 9296903.936411275 11187997.541293442 8417261.576749137 1.1347251758285293 0.7919436221975457 0.8789485247148485 0.7363400492436977 0.7800276743622556 0.8845246480319654 0.9703786839322468 1.104504576891368 1.329173085483985 1.0 23.004919520878943 1.8459012602260985 2.1030060927856202 1.1731286050385636 0.8553273058434255 0.48910066146263187 0.12631835494579421 0.23643359932809974 1.9710428073779962 0.07703181149499384 0.035632812697086465 70.12958359641675 -1.8459012602260985 -0.3178012991951381 EKDECTPTRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDECTPTRK 10 2 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 60.434 0.055187 80633000.0 103280.0 93949.0 85439.0 79521.0 76187.0 91186.0 111630.0 88991.0 137590.0 90037.0 False True 102723.9519554867 97076.03567163012 97468.06855089909 89588.35044652829 85888.96285427207 84882.52644875542 106230.03043198815 95631.96030714156 103682.7881115424 84290.76157544619 1.2186857733340266 1.151680609561704 1.1563315685985145 1.0628489857259196 1.0189605746698038 1.0070205187644385 1.260280823740153 1.1345485379384572 1.2300611143338522 1.0 16.363086897316307 4.549378944420105 1.7019562356224434 1.1129922175508187 1.2298933271396062 0.14139091440304286 0.08519917709741893 1.4833151866692615 5.655965660021787 0.023665145200041825 0.2511441105652959 35430.63568875039 -4.549378944420105 0.11690110958878752 EKDEMVEQEFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDEMVEQEFNR 12 1 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 128.76 0.00022454 712380000.0 623670.0 568750.0 572260.0 496400.0 582070.0 672430.0 699520.0 608300.0 745600.0 700620.0 False True 620312.2300162504 587680.4999333649 652829.2338269113 559244.1891029616 656193.164300814 625946.496829958 665681.545174097 653694.434884812 561856.8705281332 655905.8317690401 0.9457336708582231 0.8959830382180549 0.9953093907797238 0.8526287799494434 1.0004380697927306 0.9543237253154483 1.0149041416184559 0.9966284841861159 0.8566120978262262 1.0 19.323129176792737 3.1694660932146257 24.999999999960288 0.974407739620914 0.9257212084642631 0.15623465145662874 0.05405133261280414 88.65812417713131 32077.153035267733 0.014997085860574234 0.01792495136232213 1477.2911401539864 -3.1694660932146257 -0.04868653115665089 EKDHSSSRPS(ph)SPRPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKDHSSSRPSSPRPQK 16 3 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 EKDHS(0.067)S(0.067)S(0.067)RPS(0.399)S(0.399)PRPQK;EKDHS(0.067)S(0.067)S(0.067)RPS(0.399)S(0.399)PRPQK 60.034 0.06907999999999999 386280000.0 200986.0 359590.0 409420.0 389500.0 443840.0 461740.0 501220.0 467190.0 443930.0 482160.0 True False 199903.91370764395 371558.73577325454 467062.7772575657 438810.6600636652 500360.39315421425 429821.0006190458 476974.0737536603 502054.09014275117 334529.3998572348 451388.1360020554 0.44286479365229414 0.8231468798984176 1.034725417008831 0.972136006830421 1.1084925660339815 0.9522204203813823 1.056682787408237 1.1122447625439253 0.7411125219642714 1.0 18.784008974588332 4.686625091707081 2.141769257231988 1.0119260385269497 0.3250097912382387 0.7337924073827086 0.10101840531007922 0.26974592157161764 1.5232386957031894 0.024528447935281306 0.34089530506774096 48598.749184676795 -4.686625091707081 -0.686916247288711 down EKDIQR ddPTM_BT-474_Trastuzumab_2h_R1 6 EKDIQR 6 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;;;; 121.29 0.017981 4364200000.0 5061480.0 5882260.0 4882790.0 5008140.0 5159500.0 4478790.0 6392690.0 5887460.0 8362450.0 6323610.0 False True 5034229.554063291 6078047.468198747 5570244.390028495 5642170.010503831 5816531.742247577 4169181.7892376077 6083451.162252686 6326812.161116116 6301636.248589052 5920031.795885098 0.8503720465762513 1.0266916931803445 0.9409146068945553 0.9530641396935734 0.9825169767315334 0.7042498981399943 1.0276044744356234 1.068712530482313 1.0644598653961959 1.0 22.49717349376667 2.026937214042162 24.99994038165245 1.0510589766793887 0.9170195691993616 0.36414683526817027 0.08426099046324292 228.3059439191024 211885.6187028488 0.03122271703164955 0.023059008922933284 106.39891861769446 -2.026937214042162 -0.13403940748002718 EKDKEPFTFSS(ph)PASGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDKEPFTFSSPASGR 16 2 Q6P1X5;H0YEX2 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 1 EKDKEPFT(0.001)FS(0.091)S(0.908)PASGR 111.65 0.00041775 98437000.0 147910.0 169960.0 149950.0 140870.0 145140.0 188080.0 178450.0 160980.0 237700.0 195060.0 True False 147113.6689943458 175617.0158570102 171061.65661123503 158704.12755627368 163622.71868782133 175078.4722926974 169817.69175479977 172993.1450398769 179122.02001681514 182611.10380073218 0.805611849073966 0.9616995472994128 0.936753861352812 0.8690825708465892 0.896017357555479 0.9587504190530797 0.9299417626877019 0.9473309204058559 0.9808933645802591 1.0 17.478414966545397 7.999999999785872 0.08612859766656947 1.0648958853385209 0.5404191325803965 0.48344810447133124 0.039356712528817124 158.49966066331942 0.9859178488201701 0.8287282607834596 9.841895386498258 99999999.95069514 -7.999999999785872 -0.5244767527581243 EKDLDLEPLS(ph)DLEEGLEETR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKDLDLEPLSDLEEGLEETR 20 1 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 EKDLDLEPLS(1)DLEEGLEETR;EKDLDLEPLS(1)DLEEGLEETR 227.96 2.0429e-25 159285000.0 309310.0 294760.0 288870.0 252060.0 269420.0 371860.0 339550.0 335460.0 450660.0 340650.0 True False 307644.7093275714 304570.9084138174 329540.38509694877 283970.77015570627 303729.04002254916 346154.19346428337 323124.66929303616 360493.7286313645 339600.8815346146 318909.4253548624 0.9646773813136555 0.9550389050900895 1.0333353576184112 0.8904433283516829 0.9523990696875093 1.0854310532813656 1.0132176837780298 1.130395341028976 1.0648819211182863 1.0 18.282787211449293 2.7418923823854304 24.914674338282634 1.0681996060464662 0.9592499801909399 0.5235647407718109 0.04708244056923684 203.95206083511385 1525138.3227814594 0.014454240446864355 0.014776897984377094 551.9406521492323 -2.7418923823854304 -0.10894962585552637 EKDLEDLFYK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKDLEDLFYK 10 1 Q13242;H0YIB4;S4R3G0 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 ; 125.24 0.00037782 602070000.0 2808000.0 2435400.0 2170100.0 1967820.0 1989430.0 3039600.0 2900500.0 2697700.0 4018400.0 2840200.0 False True 2792882.0399981253 2516460.8167696134 2475631.217152663 2216945.8102348708 2242772.118224557 2829479.606448762 2760191.7340139896 2899016.072643033 3028119.1638013055 2658936.004382447 1.0503758027251913 0.9464164660683798 0.9310608503071673 0.8337717818634636 0.8434848053988624 1.064139791926254 1.0380812962270072 1.0902917813233892 1.1388461996867816 1.0 21.342417623965737 2.7093766091911404 17.696236652297266 1.070941957772516 0.918143667650058 0.554304336171145 0.0650295023343943 15.321146915541775 9289.544965035257 0.022188566399390167 0.02094043984287968 512.1257455332915 -2.7093766091911404 -0.15279829012245816 EKDLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDLFR 6 1 O60524-4;O60524-3;O60524;O60524-5;O60524-2 O60524-4 NEMF Nuclear export mediator factor NEMF 0 89.67299999999999 0.045508 314960000.0 336290.0 421470.0 393770.0 323120.0 330590.0 364280.0 356990.0 366140.0 469840.0 390060.0 False True 334479.4520053316 435498.37416600494 449209.3932898037 364026.95886975963 372688.67693955346 339098.18102288316 339721.02986576594 393463.2260212476 354054.22753344785 365166.03685283277 0.9159653917654222 1.1926037205412867 1.2301510763741745 0.9968806573774215 1.0206006017195746 0.9286136902144179 0.9303193495036848 1.0774912952263933 0.9695705290252304 1.0 18.47819306466987 3.6179322335376 10.364944727788899 0.9923136431597777 1.120795007039836 0.2971385489824717 0.08695185216573155 0.4932235976154989 39.83724944891938 0.023133120902380643 0.03584736717341578 4148.89299067679 -3.6179322335376 0.12848136388005837 EKDLLPS(ph)PAGPVPSKDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKDLLPSPAGPVPSKDPK 18 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK 148.09 3.752e-08 1761440000.0 3687600.0 2543630.0 2385550.0 2131260.0 2241780.0 3405100.0 3347200.0 3330400.0 5674200.0 3254500.0 True False 3667746.3713308806 2628293.1868931972 2721414.704427689 2401077.2974769864 2527257.3949289247 3169713.4517432186 3185283.1484542815 3578931.3594285343 4275869.4403845705 3046795.023682367 1.2038047662615745 0.8626419455407384 0.8932057073989105 0.788066567922589 0.8294806100459206 1.0403435174028517 1.0454537058435054 1.1746544587377674 1.4033991151845653 1.0 21.538861013797504 2.075072694067429 1.6712699863804956 1.2125804532902313 0.9100217710455343 0.3978454923575987 0.14243508881286257 0.3438607944422188 1.8206226288582708 0.08454841589220952 0.04449270896452608 118.87011806722523 -2.075072694067429 -0.30255868224469706 EKDLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDLQK 6 1 C9JYU1;E9PP06;C9JPY5;E9PJI9;C9J1D2;E9PKU6;A8MTE9;J3KR69;Q9H892;Q9H892-2 C9JYU1 TTC12 Tetratricopeptide repeat protein 12 0 72.82300000000002 0.077138 236360000.0 244500.0 197430.0 173080.0 169720.0 160160.0 144980.0 211410.0 196940.0 300870.0 226610.0 False True 243183.63916650394 204001.33820104494 197448.15956167126 191206.53459821618 180555.42665730626 134957.87384621063 201183.29063537248 211636.66284105662 226724.6199514481 212147.55578941802 1.146294795910319 0.9616011716087873 0.9307114514091424 0.9012903018690052 0.8510841710405056 0.6361509721100561 0.9483177399181121 0.9975918037497046 1.0687119118944721 1.0 17.694708531473196 -0.24623289358023048 7.119691923625493 1.0000000000007196 0.9311821428646654 0.018117265476546573 0.1285184424178379 0.0 0.0 0.12994256976060162 0.030627757414175814 0.5672403370690627 0.24623289358023048 -0.06881785713605426 EKDQADFR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKDQADFR 8 1 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 0 ;;; 84.615 0.015802 5399700000.0 12027200.0 12073900.0 11332700.0 10569600.0 10964800.0 12772100.0 13419400.0 12055500.0 16323600.0 12762100.0 False True 11962446.89154753 12475772.462673336 12928245.654405763 11907710.27627449 12361102.286538657 11889194.789289458 12770252.354913771 12955142.626588617 12300867.505033601 11947611.851816475 1.0012416740613146 1.04420637508211 1.0820778089171181 0.9966602885968446 1.0346086263807872 0.9951105657556044 1.068853969588259 1.0843290514680521 1.029567051357081 1.0 23.51021893816173 2.2061813859147748 24.982663687545735 1.0566785614686045 1.028148549204507 0.03912952792015956 0.03297762720068398 380.81862266061955 293823.8588137047 0.012269801130507 0.009062508709565858 160.76125426523268 -2.2061813859147748 -0.02853001226409746 EKDRDPEAQFEMPYVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDRDPEAQFEMPYVVR 17 2 O14744-2;O14744;O14744-4;O14744-3;O14744-5;H0YJD3;H7BZ44 O14744-2 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed 0 190.55 1.6445e-10 768680000.0 376960.0 451250.0 400150.0 410210.0 394620.0 506300.0 426410.0 437600.0 595850.0 487800.0 False True 374930.4892441934 466269.5834636148 456487.6418338501 462142.5439402212 444872.5179040106 471300.67270200275 405782.9192556131 470255.934087775 449010.7514809398 456668.18637340877 0.8210129376904306 1.0210248871646932 0.9996046483093285 1.011987604414239 0.974170155002317 1.0320418342359179 0.8885727785815416 1.0297540930588402 0.9832319501971883 1.0 18.80078676281743 4.744409272199488 24.89786582655738 0.9925356625880939 0.8210128588828742 0.633371982153728 0.03933673138728199 366.96118681753643 1562115.3677113852 0.008762758882418101 0.07811623412984428 55514.86297476542 -4.744409272199488 -0.17152280370521966 EKDRES(ph)EKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDRESEKDR 10 3 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 EKDRES(1)EKDR 118.58 0.0044563 1038900000.0 1782500.0 1070400.0 887780.0 804150.0 901270.0 1103500.0 1408600.0 1381100.0 2570100.0 1400100.0 True False 1772903.2180543656 1106027.616929535 1012771.7072779089 905955.3075486432 1016041.3922541863 1027217.6423595892 1340460.6366254464 1484164.6950836983 1936733.2925755845 1310744.4193140825 1.3525926122059193 0.8438163845155439 0.7726690973118132 0.6911761699681568 0.7751636225053582 0.7836902657934917 1.0226712522086605 1.1323067054219214 1.4775827110437627 1.0 20.321954972706546 1.8141379381925111 2.310030996931583 1.2430973090558866 0.8544911960933588 0.34350682985207304 0.2044978881272127 0.29615689808930135 3.0201677144680517 0.12528513311647818 0.058070648035908265 65.18353935103427 -1.8141379381925111 -0.3886061129625278 EKDRQS(ph)PLHGNHITISHTQATGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDRQSPLHGNHITISHTQATGSR 24 2 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 EKDRQS(1)PLHGNHITISHTQATGSR 215.06 8.9848e-33 385010000.0 187140.0 197530.0 192760.0 207070.0 158690.0 248760.0 241190.0 89342.0 300080.0 217320.0 True False 186132.4590332085 204104.66664059344 219898.93250004447 233285.0407686346 178898.230870679 231563.80671805286 229522.7182647249 96009.1537094836 226129.30486599027 203450.45154298726 0.9148785742256285 1.0032155991429095 1.0808476011348729 1.1466430229049827 0.8793208838510708 1.1381828104182188 1.1281504490356407 0.47190435303210776 1.1114711378176085 1.0 17.63431795680521 EKDS(ph)PHMQDPNQADEEAMTQIIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKDSPHMQDPNQADEEAMTQIIR 23 1 P23511-2;P23511 P23511-2 NFYA Nuclear transcription factor Y subunit alpha 1 EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR 286.81 9.804799999999997e-53 1094560000.0 968740.0 804320.0 762020.0 706310.0 747729.0 987610.0 992020.0 831930.0 1205880.0 948470.0 True False 963524.4114771322 831091.3049782921 869305.7924034233 795728.7735804043 842947.8560129945 919338.8452838735 944032.202715587 894012.8410549413 908707.0319641437 887937.8325739797 1.0851259808178686 0.9359791581006304 0.9790165037606908 0.8961536994923652 0.9493320648016912 1.035363976573526 1.063173758436443 1.0068417047433953 1.0233903755738818 1.0 19.760099146758986 2.7348545711991847 24.870409940307827 1.027676354523741 0.9637761983403258 0.2542104511603652 0.048010151346423474 377.4123743676542 2532720.142461897 0.015113715885097774 0.014769702419950488 543.0684479519964 -2.7348545711991847 -0.06390015618341527 EKDSELNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKDSELNQK 9 1 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 137.85 0.00013959999999999998 240750000.0 466090.0 377450.0 353520.0 314100.0 320850.0 467340.0 451400.0 424250.0 666870.0 474630.0 False True 463580.6232274676 390013.1950766563 403292.54314907547 353865.0277946013 361708.34567305655 435033.8858000274 429564.0574845429 455909.68929784914 502528.82410018326 444338.70704881335 1.043304613965446 0.8777385109369077 0.9076241541675353 0.7963857799940148 0.8140374447129151 0.9790591701754137 0.966749127793975 1.0260409054297506 1.1309589196895633 1.0 18.761300296709862 2.0720110718272635 1.5318949504818054 1.0590655700384901 0.8873819781204713 0.47094361083361336 0.07265770138210961 0.3456258412545208 1.5310433317828547 0.04704763922750304 0.024107614377371044 118.03507269223306 -2.0720110718272635 -0.17168359191801885 EKDVER ddPTM_BT-474_Trastuzumab_2h_R1 4 EKDVER 6 1 Q13243;Q13243-3;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ;;; 69.176 0.085905 3409090000.0 3181030.0 2972010.0 2671070.0 2503540.0 2574720.0 2133020.0 3454040.0 3579190.0 4459110.0 3978390.0 False True 3163903.6879256563 3070931.5562320175 3047133.438643357 2820487.90730626 2902595.330438939 1985569.3479889904 3286954.8894858407 3846287.332558558 3360222.0895127505 3724485.7441289625 0.8494873937732286 0.8245249860528624 0.8181353475299671 0.7572825085321628 0.7793278132462721 0.5331123501060282 0.8825258345174721 1.0327029278126774 0.9021975972950323 1.0 21.828609809499724 2.004487484753606 24.999819962157733 0.9758539973377746 0.7616883276938314 0.5591138775097919 0.0875562810528215 91.85252501761678 511708.1645248889 0.03365909269152902 0.024763579819550283 101.03863833801226 -2.004487484753606 -0.21416566964394312 EKEAAEQAER ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEAAEQAER 10 1 Q969G3;Q969G3-4;Q969G3-2;B4DGM3;Q969G3-5;A0A2R8Y855;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8YES3;A0A2R8Y4T4;A0A2R8Y765;A0A2R8Y7U4;Q969G3-6;Q969G3-3 Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 0 ; 93.766 0.0078087 1838710000.0 1676390.0 1554780.0 1417690.0 1388710.0 1313090.0 1686970.0 1743990.0 1631160.0 2151440.0 1807180.0 False True 1667364.50250444 1606529.9124156435 1617288.42921762 1564520.5436123554 1480304.2282058091 1570353.7346002324 1659626.5410112254 1752885.4420626487 1621246.439819004 1691844.2251953618 0.9855307466690114 0.9495731867572696 0.9559322336729125 0.9247426685702674 0.8749648496952339 0.9281904984005839 0.9809570622966686 1.0360796910012435 0.9582716988213228 1.0 20.69016530924541 2.106386038603098 4.49661139247719 1.0034888926952397 0.9348416067043452 0.4394949227239804 0.031842617275516676 0.18934934485923263 6.64686115327494 0.01327731789369408 0.009532394258295331 127.75739227528669 -2.106386038603098 -0.06864728599089442 EKEAAYQER ddPTM_BT-474_Trastuzumab_2h_R1 4 EKEAAYQER 9 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ;;; 107.03 0.0025904 2039060000.0 1781270.0 1929060.0 1759030.0 1743310.0 1693380.0 1997060.0 2003330.0 1782170.0 2620790.0 2062870.0 False True 1771679.8402377018 1993267.5959586038 2006686.134237151 1964012.8672543978 1909021.9055503842 1859007.9427735764 1906421.274436216 1915164.5750758918 1974931.4212867848 1931215.8704881377 0.9173908869078881 1.0321309111108234 1.0390791443371565 1.016982563817669 0.9885077762269302 0.9626101210030394 0.9871611473213222 0.9916885027419597 1.0226362839425078 1.0 20.881078006464115 3.215299745403469 23.9002962652652 0.9900174735063643 1.00628290033126 0.0072868054654118275 0.03418774253934822 499.356663939153 513081.12739852513 0.00991259579711438 0.011857039579496161 1641.722481549578 -3.215299745403469 0.016265426824895846 EKEDDEEEEDEDASGGDQDQEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEDDEEEEDEDASGGDQDQEER 23 1 O60216;E5RI01;E5RFZ5 O60216 RAD21 Double-strand-break repair protein rad21 homolog 0 266.94 3.1206e-44 607890000.0 346940.0 274910.0 223630.0 213640.0 251990.0 343030.0 327870.0 344000.0 509980.0 387920.0 False True 345072.11358865787 284060.213163396 255115.16017319477 240686.80209499746 284079.43283825356 319317.1435057631 312009.6755149689 369671.02679660567 384302.2623818911 363162.6134849793 0.9501862272585785 0.7821846264335933 0.7024818929599055 0.6627521478197327 0.7822375494882908 0.8792676659128909 0.8591459140599942 1.0179214849490434 1.0582098710383527 1.0 18.470256163530216 2.013152919553739 1.3380836251799955 1.0398409163160292 0.7702406342583191 0.6537483368195229 0.076101710694203 0.26923349981380124 0.8971632650017263 0.056559884744968966 0.02682326109129554 103.07489938739927 -2.013152919553739 -0.26960028205771003 EKEDFEK ddPTM_BT-474_Trastuzumab_2h_R1 5 EKEDFEK 7 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ;;;; 81.594 0.024421 2808800000.0 8945260.0 7050190.0 5815200.0 5312170.0 5649820.0 8104850.0 7860560.0 8052130.0 13045600.0 7844250.0 False True 8897099.714071827 7284851.312220139 6633929.613375489 5984690.177330936 6369291.087893258 7544580.796264714 7480314.682544743 8653020.82848766 9830686.682084003 7343623.249199706 1.2115408718770282 0.9919968747054159 0.9033591986215308 0.8149506005748779 0.867322692321855 1.0273649042503519 1.018613622827115 1.178304024437889 1.3386698021518646 1.0 22.808060615214572 1.8750553493415747 2.311963450319269 1.1962428632171724 0.9558808091408931 0.33258301537614376 0.12687444311864873 0.31091788937086234 3.0589154293914604 0.07654835403189646 0.03730444960851516 74.99897868667959 -1.8750553493415747 -0.2403620540762793 EKEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEDFR 6 1 Q13564-2;Q13564;Q13564-4;Q13564-3 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 67.035 0.091051 447560000.0 1425300.0 1519800.0 1302300.0 1392200.0 1398500.0 1474800.0 1621000.0 1537900.0 2096900.0 1640400.0 False True 1417626.3431657178 1570385.6242614998 1485652.5202054796 1568452.3772545191 1576590.6854410763 1372850.5473057753 1542586.0371786535 1652665.9072979647 1580147.0920204464 1535708.2675829043 0.9231091432469534 1.0225806928376933 0.9674054321162124 1.0213218293883068 1.026621213625761 0.8939526968012906 1.0044785651942698 1.076158761519949 1.0289370223339915 1.0 20.550472748348465 1.9927872138240663 24.947297878954256 1.0427001830402582 0.9792222303047168 0.25866461779433814 0.04426105673925223 392.7094993635931 1358290.1388282792 0.016693262084 0.011843871477911118 98.35290994666305 -1.9927872138240663 -0.06347795273554147 EKEDPEPSTDGTYVWK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEDPEPSTDGTYVWK 16 1 Q9UHG3;Q9UHG3-2 Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 0 65.943 0.051026 353040000.0 104960.0 97614.0 84081.0 82858.0 80620.0 126130.0 91435.0 71890.0 181200.0 111010.0 False True 104394.90702215237 100863.02298109088 95918.87395484663 93347.81430437777 90886.47912782253 117410.92997808341 87011.93973438002 77254.79685002324 136545.6879556032 103925.24675955757 1.0045192123881255 0.9705343612457185 0.922960271403208 0.8982207617014194 0.8745370539085497 1.129763302364116 0.8372550698454598 0.7433689046585635 1.3138837021144303 1.0 16.665186647930657 1.2363026638151506 24.99999997110759 1.156941793131139 0.9159508955678959 0.3781316283375217 0.11994051891794265 62.06282155581382 687078.8522200146 0.09928016550470398 0.029432965115670163 17.230689792558852 -1.2363026638151506 -0.2409908975632431 EKEEAEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEEAEAR 8 1 Q99543;Q99543-2 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 0 ; 82.749 0.017753 421920000.0 1048730.0 982320.0 928150.0 866640.0 828850.0 740560.0 1054900.0 1042510.0 1445270.0 1166530.0 False True 1043083.7542048576 1015015.9273750205 1058825.452375579 976356.5351413997 934399.1345211562 689366.8302907273 1003870.4568906616 1120307.3899585165 1089102.5741258007 1092081.056683422 0.955134005686935 0.929432775308416 0.9695484102536874 0.89403302911098 0.8556133528758978 0.6312414505057791 0.9192270580531355 1.0258463720273803 0.9972726543149949 1.0 20.058648509588643 1.8880065611301808 5.286867851076211 1.0057895992220076 0.8721256664293211 0.312291773560492 0.08912508759596242 0.30278403882366683 11.824240918771764 0.04412697929288438 0.026186478427400923 77.26922585026037 -1.8880065611301808 -0.1336639327926865 EKEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEEAR 6 1 O75400-3;O75400;O75400-2;H0YII7;O95104-2;O95104-3;O95104;F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 O75400-3;O95104-2;F8VU11 PRPF40A;PRPF40B;SCAF4 Pre-mRNA-processing factor 40 homolog A;Splicing factor, arginine/serine-rich 15;Pre-mRNA-processing factor 40 homolog B 0 68.422 0.08771799999999999 158640000.0 547070.0 436450.0 425510.0 401080.0 425530.0 459010.0 459730.0 473480.0 633360.0 514960.0 False True 544124.6359051908 450976.9744104032 485418.10940077837 451856.68687634106 479718.72318608704 427279.7190933168 437491.1035608523 508813.4818827233 477276.91458918905 482094.8119205626 1.1286672713558454 0.9354528678991741 1.006893452072169 0.9372776385546252 0.9950713248188469 0.886298106779299 0.907479385264449 1.0554220234308667 0.9900063281905481 1.0 18.878957378643594 4.746242676243995 24.672285468486706 0.9696181771676107 1.128667363718501 0.49359097164040056 0.048739086587034776 707.0408661395187 2270722.3424717123 0.012118249822604083 0.1294897300271328 55749.71816936646 -4.746242676243995 0.1590491865508903 EKEEEEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEEEEQR 8 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 109.29 0.0033258000000000003 688580000.0 2242920.0 1966750.0 1702750.0 1599400.0 1689490.0 1575990.0 2114030.0 2128970.0 3265200.0 2285400.0 False True 2230844.367931838 2032212.0848245185 1942482.3994316796 1801883.8760098228 1904636.5371082188 1467045.5207814137 2011766.2925211515 2287844.5520906094 2460535.2114383867 2139543.81537062 1.0426729062080005 0.9498342918826791 0.9078955922644637 0.8421813393420473 0.8902068391519666 0.6856814570667188 0.9402781462424341 1.069314185414006 1.1500279609895079 1.0 21.028871793305743 1.7871242409362653 3.8424796233388845 1.0835768265577357 0.8839535866278008 0.45008943879240493 0.09149145053330192 0.19393805494450272 5.400852516425861 0.04945442458679268 0.025671581729135532 61.25255951232948 -1.7871242409362653 -0.19962323992993491 EKEEEEQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEEEEQRR 9 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 78.655 0.016399 76540000.0 135100.0 114740.0 128120.0 113760.0 118740.0 133600.0 144580.0 135850.0 210290.0 154250.0 False True 134372.63661102104 118559.05153820528 146158.18236099658 128162.00433592444 133860.8351728807 124364.54646057196 137586.1130507648 145987.81683232234 158466.84724163258 144405.63293993092 0.9305221262865601 0.821014036118126 1.0121362954158075 0.8875138852044406 0.9269779332539155 0.861216726305299 0.9527752501732196 1.010956524757241 1.0973730318923969 1.0 17.139767494058027 1.7426587229986812 2.5367815458392236 1.0487680773221948 0.9078873767089806 0.5497371412232444 0.052466811261218015 0.17820478798666728 2.374049321340319 0.030766749030735722 0.013761627207365337 55.29154468058683 -1.7426587229986812 -0.14088070061321423 EKEEEKVEKPPDNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEEEKVEKPPDNQK 15 3 Q8NI27;A0A0C4DG98 Q8NI27 THOC2 THO complex subunit 2 0 75.574 0.013766 39157000.0 145610.0 73369.0 73585.0 72819.0 64552.0 126270.0 127950.0 113140.0 273130.0 114100.0 False True 144826.05193879176 75811.04281250299 83945.12838771414 82037.87793369981 72772.31457032 117541.25210760799 121760.56968353408 121583.08131327914 205820.77125449223 106818.04031407546 1.3558201546570403 0.7097213409794537 0.7858703280915055 0.7680151938051389 0.6812736346440046 1.1003876476483114 1.139887694302604 1.138226098848006 1.926835304685618 1.0 16.70479579630993 1.9778902226789536 1.4015240735420846 1.407855106354558 0.8554507576602132 0.34720374333396264 0.2894219174161748 0.43808660537149063 1.5998937975548708 0.19583762334401478 0.09093447899262694 95.03645381059387 -1.9778902226789536 -0.5524043486943447 EKEEEMNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEEEMNR 8 1 Q9NW82;D6RIW8 Q9NW82 WDR70 WD repeat-containing protein 70 0 ; 134.25 0.00080692 695760000.0 568740.0 517090.0 451060.0 414160.0 410990.0 524760.0 592700.0 493040.0 791910.0 515240.0 False True 565677.967032954 534301.0280624937 514565.32731619634 466592.6135352181 463327.1403714183 488484.5763521689 564028.8366661246 529833.1484063915 596754.3915503417 482356.94208084274 1.172737277487232 1.1076880655175585 1.0667729277335776 0.9673181265358828 0.960548299300241 1.0127035266557836 1.1693183770362192 1.0984254650109126 1.2371634768559547 1.0 18.879741604272397 2.2410596059445087 24.994857345613703 1.1318174882002785 1.0438923654392742 0.17995029003382257 0.08122314845403944 107.70855291872674 1077316.2716770892 0.029973552730403277 0.023971119116045644 174.20459488879976 -2.2410596059445087 -0.08792512276100428 EKEEFAVPENSSVQQFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEEFAVPENSSVQQFK 17 1 Q9UMX0;Q9UMX0-2;Q9UMX0-4;Q9UHD9 Q9UMX0;Q9UHD9 UBQLN1;UBQLN2 Ubiquilin-1;Ubiquilin-2 0 ; 222.11 3.1639e-15 985240000.0 1681070.0 1293380.0 1108510.0 954450.0 1033790.0 1537320.0 1329430.0 1415960.0 1989330.0 1486790.0 False True 1672019.3059044343 1336429.3714352795 1264578.5726583549 1075283.2721380359 1165437.0287466098 1431048.6868620228 1265120.3919842173 1521626.1252991916 1499086.2771562946 1391901.7892950387 1.2012480469266928 0.9601463132769917 0.9085257181103491 0.7725281197336763 0.8372983192563268 1.0281247555452968 0.9089149835959096 1.0931993456735585 1.077005783515475 1.0 20.408625989493896 1.7383823007933425 9.341785314095336 1.0622183797105866 0.9368178769315428 0.17218977983303074 0.1106263688441024 0.16490680255813642 58.90977369340476 0.055076713827825356 0.029710845701949984 54.74977021663923 -1.7383823007933425 -0.1254005027790438 EKEEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEEFR 6 1 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 0 ;; 92.925 0.042137 802770000.0 974010.0 2770310.0 913000.0 834270.0 896080.0 1074340.0 1131450.0 912530.0 3718400.0 1074460.0 False True 968766.0383826849 2862518.0936622443 1041542.4640617385 939888.4964603692 1010190.4765177282 1000073.4045243327 1076717.4409412623 980627.6223334493 2802050.1440072586 1005887.0429085145 0.9630962494372186 2.845764953274769 1.0354467446465228 0.9343877158837726 1.004278247383295 0.9942203864487889 1.0704158568619615 0.9748884124185279 2.7856508976446825 1.0 19.94003687468093 EKEELDR ddPTM_BT-474_Trastuzumab_2h_R1 6 EKEELDR 7 1 Q16543;K7EKQ2;K7EQA9 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ;;;;; 121.09 0.0040782 13269930000.0 15796970.0 14310190.0 12839570.0 12565860.0 13030380.0 16645090.0 17083770.0 15320510.0 22416830.0 16692840.0 False True 15711920.868728345 14786496.023457471 14647269.852456922 14156696.58759335 14689721.655886803 15494454.106627263 16257362.778760968 16463804.25217346 16892502.616632517 15627488.659740675 1.0054028008483016 0.9461850426134202 0.9372759866523545 0.905884297587983 0.9399924694061859 0.9914871444791936 1.0403055239862669 1.0535156742482423 1.0809480003111922 1.0 23.897582619821105 2.4143517653713675 2.4450600784439325 1.0500543131125821 0.944300338975279 0.6998767733781419 0.029730619367952096 0.1518080976259361 1.854918489141973 0.01191731738243737 0.009578179255159672 259.6281419986053 -2.4143517653713675 -0.10575397413730314 EKEELEEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKEELEEIR 9 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ;;; 103.22 0.0031534 3559320000.0 8238190.0 7587710.0 6824930.0 6344140.0 6369510.0 8409970.0 8327760.0 7892230.0 11838600.0 8400190.0 False True 8193836.500388954 7840262.340482452 7785820.820645004 7147307.473520667 7180629.343456422 7828608.568839944 7924914.4336674325 8481188.278531909 8921135.65911261 7864082.682435525 1.0419316316052902 0.9969709954847912 0.9900481893501298 0.9088545685670651 0.9130917913025508 0.9954890970723372 1.0077353905965125 1.078471402325753 1.1344152928399418 1.0 22.906847059480874 1.931773449874569 2.3709506566294087 1.080013366208993 0.9702535862467306 0.44079574055068727 0.04822200503486558 0.2614161419075937 2.687602555740019 0.028198001978072724 0.01450339036953818 85.46207828487712 -1.931773449874569 -0.10975977996226238 EKEELEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEELEQR 8 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;; 108.43 0.0034762 2362830000.0 4752100.0 4245670.0 3730380.0 3523650.0 3928440.0 4881300.0 4650700.0 4540900.0 6578200.0 4822900.0 False True 4726515.221607948 4386984.559388292 4255585.078955779 3969743.728712023 4428703.548311871 4543867.220344238 4425727.873600714 4879765.01622298 4957090.753363966 4515098.392907568 1.046824412294642 0.9716254614250444 0.9425232206767765 0.8792153311537568 0.9808653462056532 1.0063716944644796 0.9802062964015934 1.0807660413089202 1.097892077202723 1.0 22.106325996545944 1.8066467583259065 4.514165324352397 1.0670463862762671 0.9682927318669865 0.41471566546589034 0.04702088912711314 0.19616768042167557 6.959536541721344 0.023998767014220365 0.013153954856537748 64.06882486294771 -1.8066467583259065 -0.09875365440928063 EKEELMLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKEELMLR 8 1 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;; 155.58 0.00037084 4188830000.0 5625040.0 5510100.0 5292900.0 4593930.0 4522460.0 6262300.0 6110400.0 5106210.0 8132200.0 6242350.0 False True 5594755.409640698 5693500.347574218 6038094.313288467 5175521.066973744 5098368.474279477 5829401.940868561 5814816.608005213 5487261.319009 6128128.275897114 5843957.878655289 0.9573572441504432 0.9742541725650337 1.033220026335619 0.8856191598979569 0.8724170468272824 0.9975092329395643 0.9950134358845204 0.9389631877825297 1.0486263595909444 1.0 22.478514349027165 EKEEPPS(ph)PIEATPPQSLLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEEPPSPIEATPPQSLLEK 20 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 EKEEPPS(1)PIEATPPQSLLEK 141.21 1.172e-07 169110000.0 224940.0 177990.0 227540.0 145810.0 156790.0 256610.0 200510.0 205930.0 307010.0 226070.0 True False 223728.94803318314 183914.2895527731 259575.65418686552 164269.53104976375 176756.2771328615 238871.15469496543 190810.56527741606 221297.5422913518 231351.49922323285 211642.01905173538 1.0571102517146802 0.8689875969658732 1.2264844918315245 0.7761669057296626 0.8351662771165203 1.128656567184676 0.9015722214914841 1.0456219576947816 1.093126498508217 1.0 17.691266560581564 1.6010221805800775 8.937493205964266 1.0536661340053133 0.9698718761396236 0.06418963438214553 0.13176761762038466 0.2870441388861935 59.674245090490274 0.06661686691978892 0.03245586252953489 39.90452821509361 -1.6010221805800775 -0.08379425786568973 EKEES(ph)PQPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKEESPQPR 9 1 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR 118.76 0.00056779 1383053000.0 1969080.0 1577610.0 1348810.0 1248430.0 1425150.0 1733010.0 1922380.0 1848080.0 2876200.0 1918190.0 True False 1958478.6920653528 1630119.795164615 1538710.7239333102 1406481.1099955868 1606634.4049741528 1613211.0977667363 1829387.1351952504 1985993.11396009 2167399.049105441 1795769.471954919 1.0906069641184537 0.907755600383398 0.8568531473353491 0.7832191893007607 0.8946774238372206 0.8983397495952278 1.0187204781935257 1.1059287647863225 1.2069472629724334 1.0 20.77617072841563 2.022801401205243 2.3974625356994377 1.1158544063772067 0.8960173269093776 0.5183055011770894 0.08624438569095288 0.22645763406735525 2.465989910092753 0.045981620470808636 0.02580482411886633 105.3904845376266 -2.022801401205243 -0.21983707946782904 EKEEYISR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEEYISR 8 1 Q08379;Q08379-2;A0A087WYC0 Q08379 GOLGA2 Golgin subfamily A member 2 0 ;; 140.75 0.00058778 1084760000.0 1273730.0 1311120.0 1205900.0 1104380.0 1127700.0 1298090.0 1326280.0 1161980.0 1636350.0 1288610.0 False True 1266872.3792047075 1354759.8366112218 1375680.2381293008 1244194.3947653675 1271305.910598431 1208356.0936751785 1262122.7695183873 1248692.8480148846 1233093.468466619 1206369.8065654759 1.0501525919415058 1.123005424404819 1.1403470400555284 1.031354057432503 1.0538276933652937 1.0016464993560785 1.0462154827230297 1.0350829747388175 1.022152130926772 1.0 20.202240795232242 3.7204384023419554 23.961723732263874 1.0301285049838675 1.106352054657085 0.633549037194802 0.02687087504871793 277.32205914214194 366683.4193082294 0.006917866461046075 0.010745542287461269 5253.374991861379 -3.7204384023419554 0.07622354967321754 EKEFER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEFER 6 1 H3BST1;Q9UL45;H3BMT8;H3BRA4;H3BNE3;H3BR42 H3BST1 BLOC1S6 Biogenesis of lysosome-related organelles complex 1 subunit 6 0 80.18 0.059458 288690000.0 292990.0 963040.0 294090.0 269530.0 292520.0 333770.0 331680.0 309780.0 1224000.0 353980.0 False True 291412.57439424895 995094.2042300272 335495.3157238959 303652.47036446625 329770.6880981225 310697.26551006787 315635.3712593559 332897.35663096665 922361.6007597056 331388.693342475 0.8793678850505845 3.00280071173594 1.0123921620258085 0.9163030497563035 0.9951175001535724 0.9375614550282092 0.9524627049757587 1.0045525490724347 2.7833224829022374 1.0 18.33816485449463 EKEFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEFNK 6 1 Q16531;F5GY55;F5H2L3 Q16531 DDB1 DNA damage-binding protein 1 0 68.7 0.087048 674270000.0 606720.0 487030.0 466640.0 413690.0 460650.0 525380.0 564260.0 605150.0 747840.0 568530.0 False True 603453.4869329284 503240.499134148 532338.8558924086 466063.1115834087 519311.0470135373 489061.7172114914 536964.5881174742 650309.3658894359 563544.8525425958 532245.9286569785 1.1337869478036753 0.9455037080395895 1.000174594544414 0.8756536903146078 0.9756975470416844 0.9188641770272358 1.0088655623395792 1.2218212124804186 1.0588053796195194 1.0 19.021733483456604 1.9736786590097586 16.84800850485072 1.117480394018392 0.9697414297097107 0.27862083268733706 0.08248178976805597 12.296931674708874 7869.856030853965 0.03239855680161275 0.021104018761002152 94.11929360731484 -1.9736786590097586 -0.14773896430868128 EKEHASGSGAQSEAAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEHASGSGAQSEAAGR 17 1 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 168.32 1.2691e-09 47694000.0 19168.0 43453.0 44043.0 57869.0 58886.0 57975.0 57733.0 53363.0 47582.0 66121.0 False True 19064.801617765002 44899.30683710683 50243.87157138133 65195.20946655779 66384.78305533314 53967.32470847048 54940.23422852263 57345.21803182346 35856.0536661342 61901.10117096387 0.3079880851410085 0.7253393879553128 0.8116797701645633 1.0532156655258194 1.0724329906827643 0.8718314163655797 0.8875485765072885 0.9264006123807463 0.5792474283632502 1.0 15.917677453605439 4.762348505142444 1.672877157905225 0.9116477437258972 0.07188575374847873 0.6537425856469674 0.13132852553757143 0.6260644716031143 1.628497009252805 0.0347133679368957 0.8629669363553533 57856.013412851746 -4.762348505142444 -0.8397619899774185 EKEHNKEPDSSVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEHNKEPDSSVSK 14 2 Q8WXA9-2;Q8WXA9 Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 0 ; 154.6 3.6485e-06 383490000.0 415000.0 280260.0 263181.0 239269.0 243390.0 387340.0 358220.0 334670.0 605580.0 393650.0 False True 412765.68611083453 289588.28467925236 300234.59718973946 269560.4308671964 274384.27381444705 360564.0975002842 340891.5300667098 359644.77481982607 456342.9233562603 368526.91997927945 1.1200421563071767 0.7857995413076867 0.8146883739364827 0.7314538402848632 0.7445433669536934 0.978392833610519 0.9250112042992044 0.9758982460224268 1.2382892500279716 1.0 18.491410482908005 1.7935895902267176 1.3622471869076669 1.104457431117495 0.8412645887289014 0.3786784486147078 0.12423641095528717 0.4184742057434705 1.4643360273525052 0.09702713311089486 0.039126120539239084 62.17124870470499 -1.7935895902267176 -0.26319284238859364 EKEHQVVR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKEHQVVR 8 1 Q9H307 Q9H307 PNN Pinin 0 ;;;; 122.19 0.00084188 599837000.0 1039686.0 1143230.0 1040208.0 989901.0 1004705.0 1108420.0 1194950.0 1023760.0 1537580.0 1230539.0 False True 1034088.4460959751 1181281.7194528705 1186660.2447499824 1115222.3651031628 1132648.2263969092 1031797.5343400241 1137145.7033477053 1100158.1697479463 1158664.0115164276 1152004.9475025586 0.8976423654583987 1.025413755395566 1.0300825941091254 0.9680708121270338 0.9831973628693063 0.8956537353219418 0.9871014059557064 0.954994309818711 1.0057804126868597 1.0 20.135715482043704 1.2248966630835787 24.762136394768874 1.002890241082797 0.9700634644908877 0.09614146326904793 0.042612348544505255 614.1372926752564 1112917.7122762399 0.03943724553581805 0.010075817427248569 16.784046075843392 -1.2248966630835787 -0.032826776591909246 EKEIAETR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEIAETR 8 1 P12270 P12270 TPR Nucleoprotein TPR 0 ;; 102.61 0.0044983 1101710000.0 1625790.0 1688400.0 1583140.0 1498150.0 1501470.0 1823010.0 1915960.0 1805110.0 2325390.0 1897200.0 False True 1617036.9272822503 1744597.3733406486 1806032.351100437 1687815.6363912206 1692673.304590073 1696989.6096039445 1823277.6951220313 1939816.474362854 1752328.7931295827 1776119.0717253613 0.9104327254993242 0.9822524858346958 1.0168419335456025 0.9502829304972438 0.9530179206655175 0.9554481096559879 1.0265514987972395 1.092165781699801 0.986605470897473 1.0 20.760296873100774 2.170085062828713 5.236140551785487 1.0415030243176564 0.9639768941150818 0.4037287218036725 0.03708591547682443 0.1733869015305909 8.894756472394675 0.014219619402367935 0.010482109454458727 147.93981212204758 -2.170085062828713 -0.0775261302025746 EKEIS(ph)DDEAEEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKEISDDEAEEEK 13 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK 251.04 1.0035e-17 5116210000.0 7106600.0 3947810.0 3104000.0 2651100.0 2898250.0 4754350.0 4470900.0 4740100.0 7803100.0 4189060.0 True False 7068338.855217479 4079210.469348464 3541016.2195483446 2986728.988176594 3267324.9582263874 4425692.975036084 4254625.486503419 5093830.331740094 5880130.56118305 3921710.604365298 1.8023611551932557 1.0401610115769 0.9029264463335978 0.7615883193553431 0.8331377013361192 1.128510851899627 1.0848902215700336 1.2988797098057407 1.4993790094143646 1.0 21.90305164767643 1.790770246276105 3.620198686711582 1.3007072437976903 1.0472612726390824 0.06954567664256106 0.2924485446740851 0.4959904995690701 12.154840951650067 0.15755676805326224 0.08095734645795116 61.76895389343828 -1.790770246276105 -0.2534459711586079 EKEIS(ph)DDEAEEEKGEK ddPTM_BT-474_Trastuzumab_2h_R1 11 EKEISDDEAEEEKGEK 16 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK 214.49 8.860799999999998e-15 66473650000.0 28015180.0 13200350.0 10778887.0 8257602.0 9469686.0 16985130.0 15852160.0 16510560.0 31262740.0 14830150.0 True False 27864349.3836591 13639715.669969928 12296460.597834654 9303013.566529 10675594.380873634 15810987.941795314 15085330.459668064 17742661.82612489 23558456.626253642 13883677.130269794 2.0069862704389774 0.9824281810927473 0.8856775105368432 0.6700684176993836 0.7689313343075547 1.138818469591425 1.0865515178812661 1.2779511983494325 1.6968456126720546 1.0 23.726886384506955 1.6723945274630383 3.310306214937873 1.3839866384564696 1.0381422882551021 0.07620577629646608 0.3783973844281613 0.4326490720439951 11.066121625735585 0.22790290392707316 0.10193979831300021 47.03211698948281 -1.6723945274630383 -0.3458443502013675 EKELAEDIMSVEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKELAEDIMSVEEK 14 1 Q6DKK2 Q6DKK2 TTC19 Tetratricopeptide repeat protein 19, mitochondrial 0 77.562 0.012731 0.0 59211.0 47387.0 45437.0 36705.0 42472.0 75932.0 60156.0 49330.0 93305.0 51567.0 False True 58892.21455496051 48964.247648953606 51834.1346545161 41351.84923655157 47880.55744873328 70682.99956470178 57246.02446176372 53011.25509266443 70311.23297294462 48275.94991127014 1.2199079389054546 1.0142575700519314 1.0737051212826636 0.8565724612888017 0.991809742464652 1.464145183981158 1.1858083490222426 1.0980882859912162 1.4564443185928961 1.0 15.559017026478784 2.8191141269852995 24.99938636993358 1.2298656468344245 1.0229602758737244 0.3047833200563076 0.15762745213758936 129.5405212399686 40200.94820209131 0.04729361420012779 0.0501624518832843 659.3471403996899 -2.8191141269852995 -0.20690537096070005 EKELER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKELER 6 1 O15042-2;O15042;E7ET15;O15042-3;H7C4V2;E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;O14776;O14776-2;G3V220 O15042-2;E7EPN9;O14776 U2SURP;PRRC2C;TCERG1 U2 snRNP-associated SURP motif-containing protein;Protein PRRC2C;Transcription elongation regulator 1 0 99.171 0.035661 1015700000.0 2275000.0 2291500.0 2058800.0 2020200.0 2045300.0 1940600.0 2409200.0 2372300.0 3083400.0 2587700.0 False True 2262751.6527762627 2367771.1922589974 2348661.1445896053 2275957.1128642275 2305756.831557125 1806450.8896810324 2292657.7919622497 2549333.0722953132 2323537.3854431966 2422550.77055857 0.9340368343465255 0.9773876448884734 0.9694992456434967 0.9394878904186836 0.951788858082625 0.7456813337557079 0.9463817311179114 1.0523342186580926 0.9591284581860202 1.0 21.20809547053338 1.985332062004927 24.84529735717369 1.0070663639827953 0.9201613509889833 0.25133683355580905 0.06489672667019714 881.1837933458888 1492593.2603608023 0.027317961036825256 0.01836983320939491 96.67898049354389 -1.985332062004927 -0.08690501299381193 EKELETGPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKELETGPK 9 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;; 121.9 0.00054807 2787850000.0 2862050.0 2267130.0 2045680.0 1933690.0 1963280.0 2769950.0 2663140.0 2436570.0 3849300.0 2706360.0 False True 2846641.0408036495 2342590.051540972 2333693.96263069 2178494.9557342953 2213292.0707277516 2578469.8762609386 2534313.7440172494 2618399.2260517594 2900691.5929773967 2533637.7877686326 1.1235390688227294 0.9245954819785366 0.9210842899078986 0.8598288856643906 0.8735629384013062 1.0176947504922516 1.0002667927719897 1.0334544419460114 1.1448722492933874 1.0 21.272778858940534 2.143071069589964 1.5780573375317855 1.0626337229058929 0.9375081568256618 0.2838876112241664 0.07765457073483094 0.48806789509628723 2.340729601740683 0.04693077931927022 0.025888321246922318 139.01801069257294 -2.143071069589964 -0.12512556608023107 EKELGNDAYK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKELGNDAYK 10 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 134.38 0.000157 6949600000.0 5706600.0 4708890.0 4440370.0 4109090.0 4228780.0 6097020.0 6160370.0 5959070.0 9278500.0 6290920.0 False True 5675876.29966286 4865622.557065883 5065535.499612076 4629300.3726855125 4767290.067057218 5675547.35824129 5862369.368201264 6403766.062944323 6991938.000530165 5889428.099672416 0.9637398069226052 0.8261621459198254 0.8601065186437769 0.7860356378139679 0.8094657047128883 0.9636839540594743 0.9954055417583488 1.0873324123441654 1.187201521471851 1.0 22.4896961154639 2.235462419802938 1.640949962880373 1.0981029528675326 0.8464843107268939 0.7221249621197783 0.06457603274118262 0.1863665685164298 0.9949842199290001 0.03454161542971811 0.021120134902582913 171.9738523070953 -2.235462419802938 -0.25161864214063867 EKELLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKELLK 6 1 A0A1W2PS94;A0A2R8Y358;Q9BXT5 REV__Q96A19;A0A1W2PS94 TEX15 Testis-expressed sequence 15 protein 0 81.297 0.056772 547130000.0 1081500.0 1059700.0 960520.0 848360.0 960110.0 1174500.0 1268600.0 1069100.0 1838500.0 1262200.0 False True 1075677.3241659456 1094971.4738978224 1095752.8670104935 955762.2890156887 1082374.3174821832 1093309.5794756107 1207232.971477385 1148881.6707798005 1385426.309637842 1181645.3153762121 0.9103216592734272 0.9266498666304157 0.927311142143891 0.8088402472203711 0.9159891749222371 0.925243442553253 1.0216542610275794 0.9722728604175269 1.1724552973806275 1.0 20.17236562807417 2.0252853962141257 1.2729563540783568 1.0632494893200193 0.8959943200387198 0.5885299587059374 0.05783636785563495 0.31963183893845964 0.9631606287156196 0.04053357098833938 0.019293593883044403 105.99500415425888 -2.0252853962141257 -0.16725516928129947 EKEMEADER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEMEADER 9 1 P49756 P49756 RBM25 RNA-binding protein 25 0 76.143 0.033075 233090000.0 907360.0 828070.0 726010.0 667870.0 721250.0 878450.0 871340.0 894540.0 1217100.0 881280.0 False True 902474.8745771733 855631.8093711153 828225.8974079546 752422.2735217469 813096.9123163222 817724.8191488734 829189.9553579557 961295.1171820803 917162.0133044425 825035.9558982317 1.0938612652276862 1.0370842667572873 1.0038664272592215 0.9119872511526737 0.9855290627074413 0.9911384022755729 1.0050349314233238 1.1651554217846187 1.1116630817694624 1.0 19.654097469268848 1.7612013862414437 24.99999999999987 1.1080709121443941 1.0005811006704781 0.3184468480328442 0.0576018799216124 11.514877773329092 12724.636922071413 0.02698148030180185 0.014963274301291447 57.703397718717916 -1.7612013862414437 -0.10748981147391601 EKENLSYDLVPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKENLSYDLVPLK 13 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3;R4GN69 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 105.99 0.0012852 494480000.0 650940.0 606850.0 558550.0 495490.0 558040.0 715300.0 685840.0 688050.0 1082300.0 756630.0 False True 647435.4113662328 627048.635401429 637188.9849963686 558218.9831962661 629103.086237782 665852.9946350834 652663.2990367714 739395.7848471056 815581.6670769834 708341.2256164664 0.9140162790931341 0.8852352689986542 0.8995508971566998 0.7880650779720614 0.8881356378633423 0.9400172834153403 0.921396744159231 1.0438412421973782 1.1513965834293862 1.0 19.434084984339435 1.8016434430029076 1.9100957286063887 1.0837358122234766 0.8807642334180577 0.7196026867165048 0.05034726867105322 0.1618497393500941 1.1457294477090125 0.033930004988354974 0.014692972926117988 63.33495160025808 -1.8016434430029076 -0.20297157880541894 EKENNPSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKENNPSGK 9 1 I3VM54;Q9Y2K7;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 0 ; 103.22 0.0031534 87785000.0 217010.0 181282.0 160799.0 150765.0 160254.0 156072.0 198709.0 210776.0 299391.0 246829.0 False True 215841.64227207738 187315.861782717 183438.1015100365 169851.83354171622 180661.39700012474 145283.10999396993 189096.68652790415 226505.17541884104 225610.0996838633 231076.16189906118 0.934071435574395 0.8106239096378121 0.7938426015149327 0.7350469738886826 0.7818261975419228 0.6287239185556172 0.8183305667440741 0.980218701736024 0.9763451921207451 1.0 17.81800891172456 1.7748445380886049 4.001781926127549 0.9856715143428555 0.7769446450695691 0.6246184476488148 0.0711484610462511 0.13871785063723244 4.37685978923909 0.03843446335572924 0.019874370258479154 59.54489559179048 -1.7748445380886049 -0.20872686927328643 EKEPEYTLLTER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKEPEYTLLTER 12 1 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 87.647 0.009512799999999998 328210000.0 252290.0 271050.0 223560.0 233950.0 246820.0 296920.0 290690.0 255400.0 354290.0 325650.0 False True 250931.69867205393 280071.735396815 255035.30478164542 263568.0460125658 278251.06398324424 276394.6192744988 276628.2141563621 274459.2448949215 266979.9767427741 304866.7381970084 0.8230865070951066 0.918669373553731 0.8365468344954007 0.8645352640675582 0.9126973497628174 0.9066079852105394 0.9073742048488143 0.900259721733116 0.8757268120546773 1.0 18.21781923135755 -4.999999999872477 0.14164786356001335 1.3898384408021585 0.8453011672889993 0.6149556760076271 0.029170895958537283 91.15766205452167 0.7876000925739197 10.06673396198986 0.16699082144281577 1.0000000002936324e-05 4.999999999872477 -0.5445372735131592 EKEPIAASTNR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKEPIAASTNR 11 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;;;; 157.56 2.7847e-05 1716470000.0 1381040.0 1469600.0 1399940.0 1213429.0 1243291.0 1661960.0 1586990.0 1396700.0 1996060.0 1643990.0 False True 1373604.6340879684 1518514.7476080395 1597039.3835033863 1367048.9869843205 1401616.7392868944 1547072.6170330246 1510221.230809468 1500928.846298892 1504157.7588336745 1539069.15070935 0.8924905248441113 0.9866449125487071 1.0376657752949685 0.8882310365029757 0.9106912049019342 1.005200199302277 0.9812562548689993 0.9752185895007517 0.9773165540615346 1.0 20.553626623046323 2.7213702423142263 24.522117842688186 0.9848280902845866 0.9477617785378966 0.20829221274470489 0.04286538255594937 1328.7966331175023 1895530.1593505573 0.014532120381273064 0.013736964199416741 526.4658949065632 -2.7213702423142263 -0.03706631174669006 EKEPIVGSTDYGKDEDSAEALLK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEPIVGSTDYGKDEDSAEALLK 23 2 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;; 243.35 1.2308e-37 938080000.0 1651870.0 1021510.0 934560.0 847660.0 847480.0 1547810.0 1441640.0 1310330.0 2352190.0 1407110.0 False True 1642976.5154600088 1055510.342834165 1066137.924658859 954973.6690874615 955401.5545924961 1440813.5378528286 1371902.3656003906 1408113.478320919 1772524.292231184 1317307.0351125197 1.247223670463182 0.8012637256917156 0.8093313830725828 0.7249438768888766 0.725268695244529 1.0937568079789077 1.0414446511197806 1.0689333927383473 1.3455665573666211 1.0 20.329160214393426 2.7135259216241736 19.938866551912692 1.1046452977765129 0.8477576475259285 0.3638107465166325 0.16360930857600564 66.57073631599415 53019.125843225884 0.05306895972728171 0.050092924405353914 517.0421176089292 -2.7135259216241736 -0.25688765025058435 EKEPPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEPPK 6 1 Q5STZ8;H7C5Z1;Q8NE71;Q8NE71-2;E9PFR3;Q14738;Q14738-2 Q5STZ8;Q8NE71;E9PFR3 ABCF1;PPP2R5D ATP-binding cassette sub-family F member 1;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 0 ;; 93.262 0.041787 773760000.0 1069540.0 1072070.0 994060.0 964880.0 1024630.0 931340.0 1106480.0 1109720.0 1399340.0 1225810.0 False True 1063781.7154770647 1107753.20187 1134015.0074755892 1087033.7090686252 1155110.5570421824 866958.657938542 1052955.3352359256 1192532.9414439802 1054491.4071953304 1147577.7563312585 0.9269800757361445 0.965296857453411 0.9881814118643876 0.947241878009043 1.0065640874174888 0.7554683359410521 0.9175459609832144 1.0391739774186988 0.9188844950833485 1.0 20.130160478843848 1.764555618613955 24.999999999397755 0.9891693107496573 0.9301764327448167 0.1195507004862616 0.0699819389556063 36.10609160362941 34746.756518630595 0.03334135082503643 0.018490561442530487 58.15078992745042 -1.764555618613955 -0.058992878004840654 EKEPS(ph)RER ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEPSRER 8 2 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H7C477 Q8NI27 THOC2 THO complex subunit 2 1 EKEPS(1)RER;EKEPS(1)RER 65.627 0.033281 194529000.0 510270.0 414910.0 373470.0 379110.0 384150.0 448860.0 480350.0 438850.0 724620.0 486920.0 True False 507522.76301632635 428720.028531609 426051.3297405666 427105.28712897556 433069.2254645621 417831.36470278725 457113.63538480276 471599.2154351466 546047.1104105371 455844.34872681444 1.1133685531779678 0.9404965307325529 0.9346421227564616 0.936954222031911 0.9500375000241555 0.9166097284518312 1.0027844738265013 1.0345619436817324 1.1978806185393356 1.0 18.798181764498075 1.6216541168583236 2.8323198220271366 1.1014933281539312 0.9627286973439046 0.3456254883608625 0.06976277613832142 0.2150132158805821 4.018307857835492 0.044109898216894566 0.01790688016692882 41.84601600833015 -1.6216541168583236 -0.13876463081002655 EKEQEDR ddPTM_BT-474_Trastuzumab_2h_R1 6 EKEQEDR 7 1 Q14247;Q14247-3;Q14247-2;H0YCD9 Q14247 CTTN Src substrate cortactin 0 ;;;;; 126.52 0.0035968000000000007 1920684000.0 4071490.0 3223710.0 2856850.0 2595540.0 2921970.0 2661978.0 3489840.0 3492650.0 4950300.0 4157190.0 False True 4049569.5502250604 3331009.238576153 3259069.64781465 2924135.097873286 3294065.559626934 2477961.7264821893 3321023.1067165597 3753289.278317344 3730364.8956215438 3891874.57505058 1.040519028075932 0.855888126490526 0.8374035660623247 0.7513436112815334 0.8463956111905594 0.6367013321466006 0.8533222339708619 0.964391119482201 0.9585008004974217 1.0 21.892033785900477 1.76291245624471 4.131231973561671 0.972678648012649 0.8214871404791209 0.32085222902386645 0.09508523354224219 0.24333560283822347 8.576277334052309 0.05091445554484898 0.026140823803452985 57.931190873112854 -1.76291245624471 -0.15119150753352817 EKEQEDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKEQEDRR 8 2 Q14247;Q14247-3;Q14247-2;H0YCD9 Q14247 CTTN Src substrate cortactin 0 ;;;; 174.92 0.00015139 2140577000.0 3408257.0 3074450.0 2849563.0 2733780.0 2882596.0 2337632.0 3332464.0 3191184.0 4572505.0 3579866.0 False True 3389907.3230049484 3176781.2097057295 3250756.7015543915 3079876.2676992216 3249677.5141149177 2176037.002033832 3171259.985071264 3429326.3545840085 3445672.411177907 3351395.8870025203 1.011491162876873 0.9478979257646086 0.9699709646841692 0.9189831257010508 0.9696489533563941 0.6492927351474653 0.9462504854679018 1.023253136964129 1.0281305245199508 1.0 21.67633068573241 1.8309672915129602 4.935082004121098 1.0178265762627234 0.9100061890243069 0.1990526653017547 0.09378649984718224 0.3650771183152602 13.5518232601845 0.04589146497505809 0.026179661286087664 67.7590473589384 -1.8309672915129602 -0.10782038723841658 EKEQFR ddPTM_BT-474_Trastuzumab_2h_R1 13 EKEQFR 6 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;; 138.07 0.011364 132505076400.0 42625179.0 43883172.0 41300054.0 38221945.0 38982715.0 41122869.0 45602098.0 41017415.0 53374575.0 42459811.0 False True 42395689.77236655 45343796.85208233 47114742.61669533 43060839.318015635 43946932.68659572 38280141.858851194 43396150.30280852 44078342.78951304 40221126.17391256 39749989.5103069 1.0665585147229697 1.1407247501367261 1.1852768566009004 1.0832918410418764 1.1055835039956572 0.9630226908343061 1.091727339740711 1.108889419406861 1.0118524978096786 1.0 25.244451143893304 3.2118905191463973 2.425277550166988 1.0521321776969097 1.1295119950484664 0.3470528739605987 0.051823202262842955 0.3650799581697151 4.399107932698045 0.0163510672788726 0.02167314900768107 1628.8853568279335 -3.2118905191463973 0.07737981735155675 EKEQFRK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEQFRK 7 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 129.4 0.002061 3727600000.0 2598000.0 3311000.0 3125300.0 3347700.0 3316100.0 3399000.0 4037300.0 3402300.0 5697400.0 4168000.0 False True 2584012.6566649377 3421204.633458235 3565315.074405423 3771518.4767525857 3738385.678935405 3164035.1303853616 3842000.3750162707 3656196.902529333 4293352.111248647 3901994.671595674 0.662228648202699 0.8767835226333547 0.9137160284607538 0.9665616676022442 0.9580704213024045 0.8108763329221738 0.9846247107880162 0.9370071489703431 1.1002967642426154 1.0 21.89578037718712 5.321819523829887 1.0933883822996178 0.9575565004556299 9.157938945385088e-11 0.6420265546279843 0.06748985262016732 3.3671413603535525 1.351392401266731 0.019319476845718518 5.069929418225563 209806.78257250454 -5.321819523829887 -0.9575565003640505 EKESVNAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKESVNAK 8 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ; 92.051 0.010992 440900000.0 510820.0 470750.0 402980.0 427070.0 462890.0 405170.0 517120.0 543740.0 805230.0 600270.0 False True 508069.80187743687 486418.62917561526 459716.0812350481 481137.0182115259 521836.29773601744 377161.55156758946 492104.93000976247 584316.6398557744 606791.8560291966 561960.2546829972 0.9041027326105828 0.8655747895373933 0.8180579985934677 0.8561762405829504 0.9286000093198516 0.671153428422348 0.8756934781577386 1.0397828582830797 1.0797771745823714 1.0 19.100108572143824 1.7621888399589933 4.263560043721358 1.0463669615654199 0.8405698627024986 0.6368289362453494 0.06746412206293974 0.12031799598830974 4.566649589350549 0.03467763795242168 0.017888279819120254 57.83474698299394 -1.7621888399589933 -0.2057970988629213 EKETLAVNYEKEEEFLTNELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKETLAVNYEKEEEFLTNELSR 22 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 ; 209.76 2.9819000000000006e-23 303400000.0 202933.0 215182.0 192970.0 188552.0 177199.0 265340.0 239110.0 246540.0 350770.0 265680.0 False True 201840.43127597583 222344.2027897339 220138.4986746918 212422.66386732802 199764.24230924106 246997.67034317454 227543.33581109648 264938.0667047535 264327.4335771909 248724.07493990846 0.8115033951769257 0.8939392089143445 0.8850711324501944 0.8540494679441433 0.8031560368955194 0.9930589566082374 0.9148424247474667 1.0651886704926425 1.0627336080797656 1.0 17.924186632636594 2.224259125500848 1.3316905410791338 1.0456320975096058 0.8562951250337015 0.7218714423849906 0.048390170253769266 0.21933794532547027 0.754454151404003 0.029007786415073254 0.016565697296871046 167.59425431566353 -2.224259125500848 -0.1893369724759043 EKEVDGLLTSEPMGS(ph)PVSSK ddPTM_BT-474_Trastuzumab_2h_R1 8 EKEVDGLLTSEPMGSPVSSK 20 1 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 1 EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(0.999)PVS(0.001)SK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(0.995)PVS(0.005)SK;EKEVDGLLTS(0.001)EPMGS(0.966)PVS(0.028)S(0.005)K;EKEVDGLLTSEPMGS(0.999)PVS(0.001)SK 203.24 6.55e-22 11485860000.0 8856220.0 6871740.0 6228140.0 5847550.0 6251150.0 8510690.0 8252100.0 7821010.0 12202050.0 8462600.0 True False 8808539.095538544 7100461.711845453 7105007.976036662 6587849.230437187 7047196.899031093 7922366.032309313 7852914.396916697 8404653.480484068 9195018.276593095 7922509.622803638 1.1118369702176967 0.8962389507748838 0.8968127921973195 0.8315356552518597 0.8895157260203129 0.9999818756301777 0.9912155075600511 1.0608574657066567 1.1606193888520817 1.0 22.917526076252624 2.100810794629547 1.5431710680551738 1.0814248782702498 0.9203838851281056 0.37498286151292015 0.07964221147804854 0.394325227175762 1.7853308497780884 0.04964960820924204 0.026162734709700087 126.12779246883392 -2.100810794629547 -0.16104099314214415 EKEWQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKEWQR 6 1 A0A1B0GW23;Q03154;A0A1B0GU86;Q03154-2;Q03154-4;C9JMV9;A0A1B0GV31 A0A1B0GW23 ACY1;ABHD14A-ACY1 Aminoacylase-1 0 ;; 100.74 0.034032 698210000.0 1088300.0 1096980.0 993050.0 987650.0 946520.0 1136350.0 1142580.0 1010890.0 1391900.0 1143850.0 False True 1082440.7137214963 1133492.316161587 1132862.8082546643 1112686.3887339635 1067053.7115364233 1057796.7991801728 1087309.0403205343 1086327.7449954103 1048884.89550444 1070848.5137007462 1.010825247336515 1.0584992196929424 1.057911360720484 1.039069835273553 0.9964562661144213 0.9878118012458476 1.015371480101235 1.0144551083525057 0.9794895189045907 1.0 20.030322974724836 3.28283320990503 5.858089975210527 1.001241446014776 1.0444480175197073 0.6259457284863819 0.016053845915175675 0.12653991523047817 10.314133491279811 0.004580470723946028 0.006135159413266782 1917.9320205136682 -3.28283320990503 0.043206571504931235 EKEYEIER ddPTM_BT-474_Trastuzumab_2h_R1 2 EKEYEIER 8 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 103.26 0.0043848 1094720000.0 2282200.0 2161800.0 2031500.0 1734160.0 1695140.0 2449000.0 2644500.0 1997590.0 3025400.0 2468000.0 False True 2269912.8887762567 2233754.2061643056 2317517.541885458 1953704.4781925709 1911006.0311180488 2279706.3943259045 2516575.4320289614 2146660.3093564883 2279830.7082830146 2310490.1270388947 0.9824378222664637 0.9667880334234826 1.0030415255898841 0.8455801023899733 0.8270998472376848 0.9866765357043779 1.0891954925832918 0.9290930457719075 0.986730339854266 1.0 21.139767494058027 2.5075792694139163 24.909567422370735 0.9973912072206882 0.9252013965000266 0.25204629526599087 0.06343589875342577 1047.3691607421797 856571.7190233546 0.022118654248884446 0.020827280642470906 321.7949834007862 -2.5075792694139163 -0.07218981072066155 EKFEGVELNTDEPPMVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKFEGVELNTDEPPMVFK 18 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ; 184.03 5.4971e-14 511990000.0 1272320.0 1163520.0 1037450.0 936220.0 1000160.0 1326400.0 1213520.0 1270750.0 1754930.0 1462670.0 False True 1265469.9704880412 1202247.0598373073 1183513.9423229466 1054745.3560072016 1127524.4475872344 1234709.0900097506 1154817.4015034176 1365579.8177377514 1322451.0163572128 1369321.1483452106 0.9241586402264576 0.8779876519764498 0.8643070646744869 0.7702687987268978 0.8234185595905086 0.9016943114490452 0.8433503001826743 0.9972677478822404 0.9657712640715151 1.0 20.385029412406045 1.7301415484583387 6.580145815593374 0.9852377999777133 0.8558330609187939 0.6777774832679464 0.04090799120514631 0.08246574330658855 9.707439914033891 0.021692207782882535 0.011304201906154993 53.72068582584882 -1.7301415484583387 -0.12940473905891947 EKFEPTVFR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKFEPTVFR 9 1 E7ETZ4;Q9Y6E2;Q75MG1;E9PFE3;C9JF98;F8WDX8;E7EMS9;Q9Y6E2-2 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 ;;; 140.78 9.8756e-05 2147770000.0 2329630.0 2501980.0 2351270.0 2122860.0 2119900.0 2662660.0 2548980.0 2378100.0 3720870.0 2752610.0 False True 2317087.530926227 2585256.891821152 2682308.37839479 2391613.8583382578 2389856.6993682827 2478596.5814274433 2425676.0993507993 2555565.897747116 2803911.4456035653 2576936.0731720175 0.8991637608122983 1.0032289581164862 1.0408905390862362 0.9280842793257026 0.9274024001792742 0.9618385986488499 0.941302395741999 0.9917071379273308 1.08807955105854 1.0 21.29722531759596 1.4529030646031906 5.1960125296004 1.0443193438578477 0.9607752343599307 0.3879112021891532 0.043033825119759284 0.1861099660863355 10.284544276590996 0.027965299664364843 0.011008754172074144 28.372856699255603 -1.4529030646031906 -0.08354410949791702 EKFEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKFEVK 6 1 P33316-2;H0YNW5;P33316;A0A0C4DGL3;H0YKC5;H0YMP1 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 0 ; 81.635 0.055961 929240000.0 1243740.0 1354330.0 1014110.0 1260980.0 1360590.0 2126800.0 2054860.0 1865440.0 3070900.0 2318200.0 False True 1237043.8420325047 1399408.0553402281 1156887.8731978645 1420619.9387088064 1533853.0716512515 1979779.3219486878 1955458.5714725007 2004648.6053123816 2314117.8429517816 2170250.4912891295 0.5700004893433754 0.644814071443421 0.5330665182850265 0.654588004661599 0.7067631491423565 0.9122353985841967 0.9010289730707342 0.9236945750541541 1.0662906665567415 1.0 21.049430138115746 2.7850433194578663 1.0431785466620962 0.9866786713894107 0.5783417575454831 0.9306914847281457 0.04755725450591642 0.12383712055395256 0.28525694843452004 0.024935934750724545 0.024261014958400925 609.5976995896781 -2.7850433194578663 -0.40833691384392756 EKFHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKFHFK 6 1 C9JBI3;P78330 C9JBI3 PSPH Phosphoserine phosphatase 0 72.234 0.051754 282770000.0 610670.0 645560.0 598610.0 548500.0 560390.0 677420.0 695410.0 630350.0 929330.0 712650.0 False True 607382.220571815 667047.0743507394 682889.0847886066 617940.0437610281 631752.3448082409 630591.5498751545 661770.361575822 677389.9178524435 700309.0738840002 667168.0668696393 0.9103886272939588 0.9998186476168327 1.0235638045338868 0.9262134602161196 0.9469163411438898 0.9451764573114204 0.9919095269065508 1.0153212533548934 1.049674150577768 1.0 19.34769071215325 1.8855078318899618 2.5840715102577834 1.0250421258889648 0.96171062709859 0.4159285055491645 0.03328847018712464 0.2907326205881896 3.5067968916913594 0.019189640896664625 0.009732585951985628 76.82593100301186 -1.8855078318899618 -0.06333149879037481 EKFPEFCSS(ph)PSPPVEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKFPEFCSSPSPPVEVK 17 1 Q68E01-2;Q68E01-3;Q68E01;Q68E01-4 Q68E01-2 INTS3 Integrator complex subunit 3 1 EKFPEFCS(0.047)S(0.567)PS(0.386)PPVEVK;EKFPEFCS(0.046)S(0.885)PS(0.07)PPVEVK;EKFPEFCS(0.009)S(0.99)PS(0.001)PPVEVK 205.43 4.7756e-12 7518700000.0 3428230.0 2783170.0 2485640.0 2343920.0 2288650.0 3238960.0 3170300.0 3209250.0 4839320.0 3198010.0 True False 3409772.790592163 2875806.130988207 2835596.5064298143 2640660.0316724656 2580096.0116086653 3015058.3188917236 3016940.477277904 3448740.5312412987 3646734.4295657347 2993910.263845892 1.1389028027219712 0.960551879498896 0.9471214086381091 0.8820104141265572 0.8617813442058037 1.0070636903521166 1.0076923526099368 1.1519184702654195 1.2180506789409389 1.0 21.513599549623418 1.918961272877688 2.614454994283476 1.13910111178026 0.9568095451831699 0.38441935047026665 0.08748818565160288 0.25981173940043667 3.2157411825291535 0.04814013358486767 0.025164693871652502 82.97767709506734 -1.918961272877688 -0.18229156659709023 EKFPEFCSSPS(ph)PPVEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKFPEFCSSPSPPVEVK 17 1 Q68E01-2;Q68E01-3;Q68E01;Q68E01-4 Q68E01-2 INTS3 Integrator complex subunit 3 1 EKFPEFCS(0.004)S(0.269)PS(0.727)PPVEVK 142.41 3.5587e-07 1242400000.0 699340.0 516000.0 508380.0 461810.0 473180.0 683540.0 672460.0 713130.0 1149000.0 720580.0 True False 695574.831143979 533174.7480714137 579955.4850818248 520275.09864955395 533436.6682424098 636288.4886800849 639930.5407533353 766347.3818007654 865844.3458111935 674591.9674804243 1.0311045264027154 0.7903662862497479 0.8597130013983665 0.7712441353145101 0.7907545508357826 0.9432197822583014 0.9486186785523876 1.1360161679111658 1.2835082354227987 1.0 19.363655614398024 1.934817874353969 1.8681444909806795 1.1625903946622955 0.848942965649402 0.613876475737648 0.09738278115889847 0.2039016474217603 1.3206444224418126 0.058824228462991186 0.02827845406038648 86.06327617166824 -1.934817874353969 -0.31364742901289355 EKFS(ph)FEPK ddPTM_BT-474_Trastuzumab_2h_R1 6 EKFSFEPK 8 1 P23443-5;P23443;P23443-3;P23443-2;P23443-4;K7ERJ3 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 EKFS(1)FEPK;EKFS(1)FEPK;EKFS(1)FEPK;EKFS(1)FEPK;EKFS(1)FEPK;EKFS(1)FEPK 100.93 0.007899399999999999 4862580000.0 5470220.0 3761720.0 3232875.0 3319493.0 3283166.0 5706120.0 5128660.0 4649700.0 9233500.0 5073930.0 True False 5440768.943318571 3886926.576192241 3688035.6993467584 3739740.473444715 3701257.7292505135 5311669.355161662 4880567.122416202 4996684.224698187 6958027.647561054 4750107.443389978 1.1453991321585124 0.8182818225724772 0.7764110061297355 0.7872959755149873 0.7791945284103008 1.11822088625661 1.0274645743451056 1.0519097271476108 1.4648147921882295 1.0 22.17952871567151 2.7284530013399433 23.700656588565582 1.1199000975551032 0.850096456212141 0.4226914716855108 0.15783801816784965 345.25388708316615 809559.9821655671 0.05068307838070245 0.048349704495054116 535.122240557516 -2.7284530013399433 -0.2698036413429622 EKFS(ph)S(ph)LLNMS(ph)DNIT(ph)QHDDRVTGLSLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKFSSLLNMSDNITQHDDRVTGLSLFK 27 2 F8WDM8;Q17RW2-2;Q17RW2 F8WDM8 COL24A1 Collagen alpha-1(XXIV) chain 4 EKFS(0.936)S(0.774)LLNMS(0.799)DNIT(0.799)QHDDRVT(0.687)GLS(0.005)LFK 43.15 0.072901 1869900000.0 73127.0 83399.0 76218.0 64532.0 72486.0 95583.0 95600.0 74743.0 122760.0 93832.0 True False 72733.29235717353 86174.88529923989 86948.83190126781 72701.74458338499 81716.66244181771 88975.57218818 90975.46277253507 80320.70219726376 92507.44289972333 87843.56142638315 0.8279866068286325 0.981004001886448 0.9898145121783892 0.8276274709594091 0.9302521563894007 1.012886667428045 1.0356531690575477 0.9143607214124181 1.0530930371857559 1.0 16.42264892601488 2.8380197058808334 5.468181753329099 0.9935179624805693 0.9136914322487384 0.3585622624692437 0.06097356626203042 0.3083601672788535 13.73129715825669 0.018977494693993294 0.020169575517727446 688.6835442844058 -2.8380197058808334 -0.07982653023183095 EKGHWEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKGHWEVR 8 1 H0YA89;A8MVI5;Q9ULR0;Q9ULR0-2;Q9ULR0-1;D6RC18 H0YA89 ISY1 Pre-mRNA-splicing factor ISY1 homolog 0 ; 87.913 0.009004799999999999 237220000.0 422920.0 514370.0 454410.0 483100.0 466480.0 473220.0 492240.0 453310.0 603070.0 489600.0 False True 420643.04571082955 531490.4945067686 518386.9781974748 544260.4104666405 525883.4629564204 440507.41524005914 468428.470660592 487138.2940615391 454451.4792239825 458353.3088323508 0.917726647992162 1.1595650871611114 1.1309768429905283 1.1874255077445321 1.1473320969278082 0.9610652017812332 1.0219812132564452 1.0628008670920641 0.9914872882268305 1.0 18.806100562713898 2.747594296867358 24.932870141723136 1.0167765381377267 1.1170581118964078 0.31547636408776003 0.07332924047707513 791.0586138471203 2183314.2718082606 0.022536422276311027 0.023619824919942516 559.2349391484254 -2.747594296867358 0.10028157375868108 EKGKFEDMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKGKFEDMAK 10 2 P09429;Q5T7C4;B2RPK0;P23497 P09429;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 0 71.085 0.029271 1703100000.0 6197500.0 5134700.0 5348400.0 5188500.0 4521200.0 7877400.0 7733900.0 7295900.0 14887000.0 7899400.0 False True 6164133.348606974 5305605.385508308 6101408.230873819 5845363.568011113 5096948.020748085 7332853.879405012 7359781.710632929 7840357.105829525 11218298.325579852 7395253.528983404 0.8335256288981255 0.7174338735940062 0.825043821278235 0.7904209835541165 0.6892188348610602 0.9915622027921239 0.9952034344446131 1.0601877373239033 1.5169592606410598 1.0 22.818168176924015 2.0578712124242853 1.2344104421704796 1.225037087796358 0.775870189134896 0.6268303780293321 0.1387573031179839 0.2867797259953806 0.8147929100974438 0.09488189574158444 0.04622783579662059 114.2539470921129 -2.0578712124242853 -0.44916689866146187 EKGTWVQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKGTWVQLK 9 1 P46778 P46778 RPL21 60S ribosomal protein L21 0 132.78 0.00026947 394930000.0 814120.0 867490.0 976980.0 617380.0 413830.0 628390.0 904190.0 553960.0 1530800.0 824150.0 False True 809736.8683772362 896363.880241221 1114530.2919376087 695540.2446986026 466528.7975374194 584950.8783709492 860450.8753587707 595299.308151883 1153554.8516690815 771552.0414096857 1.0494909285675451 1.161767232970435 1.444530287161544 0.901481957623748 0.6046627738616762 0.7581483127206796 1.1152207876822668 0.7715607972006978 1.4951095840034936 1.0 19.55740394471505 3.705100720962328 24.0039703606739 0.9193498153772783 1.2129133097050797 0.19367000830832892 0.24627488316787127 548.3096255881144 393354.4760869789 0.06501692939447985 0.10073270411305647 5071.083024787033 -3.705100720962328 0.2935634943278014 EKHPDGK ddPTM_BT-474_Trastuzumab_2h_R1 6 EKHPDGK 7 1 P53396;P53396-2;K7EIE7 P53396 ACLY ATP-citrate synthase 0 ;;;;; 83.265 0.013463 1988672000.0 7742010.0 5950470.0 5293480.0 4822220.0 5112500.0 4213880.0 6971260.0 6583420.0 10321310.0 7899830.0 False True 7700327.878378168 6148527.796814932 6038755.97224703 5432712.5575666465 5763546.5708384095 3922584.394006553 6634033.521000655 7074708.230329389 7777761.448968267 7395656.086015265 1.0411960465467043 0.8313701617955739 0.8165274185296351 0.7345815563056771 0.7793151146842705 0.5303903194503489 0.8970175794876681 0.9566031935567191 1.0516661887071168 1.0 22.818246707190077 1.7963804762072098 2.9769072559176886 1.009699698648692 0.7864188006589569 0.3808226716899328 0.12019234589138049 0.2617744257239506 4.384011061483039 0.06956725155886978 0.03419202785046876 62.572063332954016 -1.7963804762072098 -0.22328089798973505 EKHPNS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKHPNSSPR 9 1 P29374 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 EKHPNS(0.868)S(0.132)PR;EKHPNS(0.5)S(0.5)PR;EKHPNS(0.61)S(0.39)PR 84.71799999999998 0.0092675 145180000.0 376374.0 368973.0 322353.0 306694.0 309667.0 335032.0 414636.0 336352.0 531641.0 413075.0 True False 374347.6442030824 381254.0432561116 367737.50045749586 345521.4289539555 349101.25690989045 311872.0264204966 394578.4726166614 361452.29420084856 400625.19917441974 386712.19984870026 0.9680264660632496 0.9858857398480727 0.9509332795845898 0.8934846872923572 0.9027417729424493 0.8064706170183288 1.0203414135138194 0.9346803497336403 1.0359776581425746 1.0 18.5609007531673 1.578041928754633 1.6712151043961172 1.0108210601784757 0.9249410261029074 0.25153959851783025 0.05654322157689229 0.511509348976961 2.8477509341900222 0.0483164231678511 0.016834012852079517 37.84791230405798 -1.578041928754633 -0.08588003407556832 EKHPNSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKHPNSSPR 9 1 P29374 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 EKHPNS(0.228)S(0.772)PR;EKHPNS(0.365)S(0.635)PR 86.772 0.008425 221080000.0 475340.0 453190.0 426350.0 385520.0 388390.0 458540.0 561630.0 456420.0 692740.0 561960.0 True False 472780.82225523837 468274.1551908602 486376.37409936753 434326.7924717436 437849.1643321135 426842.20908705564 534461.8112650502 490480.3780537989 522023.50924042275 526095.2316818382 0.8986601546336723 0.8900938974372877 0.9245025326393929 0.8255668675864515 0.8322621798574057 0.8113401973298878 1.0159031655855641 0.9323034091866134 0.9922604840412661 1.0 19.004964448554105 2.234476457573983 24.99999997572257 0.9757222394441287 0.8645319515248471 0.697692983359605 0.038943861963861355 67.33657404638826 412175.9501011884 0.015228169888842154 0.011656287583638266 171.58386946623503 -2.234476457573983 -0.11119028791928165 EKIDLENTLEQEQEALVNR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKIDLENTLEQEQEALVNR 19 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 ;;; 285.1 5.1184999999999994e-40 1232051000.0 644600.0 603204.0 607580.0 586536.0 579704.0 696560.0 743610.0 686900.0 911610.0 755470.0 False True 641129.545221792 623281.2804954816 693121.9828199688 660791.3974611083 653525.8682251939 648408.4467258689 707638.7434339412 738159.9660075243 686955.930448165 707255.2578095924 0.9065037525594432 0.8812677935061483 0.9800167268697371 0.9343039732325423 0.9240311203188488 0.9167955127460271 1.0005422167175348 1.043696682147893 0.9712984426241023 1.0 19.4318714712441 2.193386828875096 5.598093013713365 1.0122874898867023 0.9248559593786065 0.6458078215343037 0.028841801550257163 0.11398115295693086 8.27015856559089 0.011145722872901987 0.008299942027071053 156.09422250498017 -2.193386828875096 -0.08743153050809571 EKIDQER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKIDQER 7 1 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 0 76.221 0.037707 160100000.0 305160.0 304670.0 289750.0 267120.0 252110.0 302280.0 332700.0 268130.0 402110.0 312780.0 False True 303517.0524664637 314810.75677309546 330544.2814478519 300937.36461156904 284214.71412695776 281384.0950905818 316606.0299625772 288139.222136552 303015.3784979453 292818.1126155698 1.0365378348877625 1.0751068434977553 1.1288382350917323 1.0277279705257123 0.9706186259730896 0.9609518092209026 1.081237861737869 0.9840211712409999 1.034824573491337 1.0 18.159645270451055 3.49361644398281 22.4288390015642 1.0056737545777656 1.0794268576012385 0.4346995614019402 0.0381958896293048 171.63103641291156 233368.99233239033 0.010186898006867869 0.015290051174376344 3116.136289226911 -3.49361644398281 0.07375310302347282 EKIEAELQDICNDVLELLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKIEAELQDICNDVLELLDK 20 1 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ; 237.15 1.2484e-29 9871900000.0 2158850.0 1577671.0 1499004.0 1297271.0 1542697.0 2088810.0 1700435.0 1736830.0 3178430.0 2055750.0 False True 2147226.991470784 1630182.8255127408 1710050.7336236588 1461505.3755878073 1739150.3186684982 1944415.4812298452 1618178.462757486 1866441.0740440357 2395148.5152799557 1924550.2749838787 1.115703247341133 0.8470461108252401 0.8885456284783121 0.7594009855627439 0.9036658284663759 1.010321999120617 0.8408086210016212 0.9698063481660256 1.244523744800597 1.0 20.876089928455542 1.4264819514361151 6.148434566323088 1.1217570110675201 0.904827024119485 0.3805345209205454 0.10701412063950244 0.1829384314651166 12.874848819181846 0.06696654789098477 0.02563952390130217 26.698198115067918 -1.4264819514361151 -0.21692998694803511 EKIETELR ddPTM_BT-474_Trastuzumab_2h_R1 9 EKIETELR 8 1 P63104;E7EX29;B0AZS6;E7ESK7;E9PD24;E7EVZ2 P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;;;;;;; 147.95 0.00048256 92108304000.0 46184914.0 46366962.0 41121164.0 39815465.0 39454506.0 48868997.0 51312361.0 46610194.0 61194857.0 48896248.0 False True 45936259.55465036 47910258.300749555 46910666.459635064 44856098.78662836 44478803.47392144 45490798.262635134 48830186.06617548 50088483.35804943 46114204.461422555 45775647.59045599 1.0035086770509798 1.0466320155509634 1.0247952553142192 0.9799118340814178 0.971669562643065 0.993777273663732 1.0667284601421205 1.0942168160280195 1.0073960039625338 1.0 25.448076960259943 2.2395138583946492 24.999990339869527 1.0552807263250177 1.0038132932026387 0.20886113456672994 0.03312850251110458 29.504300855807635 773807.4265087396 0.012514833970720726 0.009922080861844623 173.5856653404247 -2.2395138583946492 -0.051467433122379 EKINIR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKINIR 6 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ;;;; 97.071 0.037838 2079300000.0 2772620.0 3262660.0 3729490.0 2685230.0 1749460.0 2417400.0 3149050.0 2246060.0 4813790.0 2899230.0 False True 2757692.521987041 3371255.6657803836 4254569.7746918 3025179.8426771676 1972243.361138181 2250290.8279475034 2996718.4209607868 2413672.40246158 3627495.9559812616 2714198.659244318 1.0160245686492353 1.2420813982418673 1.5675233499217587 1.1145756897247279 0.7266392805924122 0.8290811066033115 1.1040895664561 0.8892762488997729 1.3364887436025858 1.0 21.372094888539923 3.479452485424017 24.997557557503846 0.9669310636769288 1.2834223803335312 0.3055118148185043 0.1982866454359463 100.5426918763153 1078115.0396290615 0.05453901705406479 0.07509440481360069 3016.1468694771 -3.479452485424017 0.31649131665660235 EKITAQSIEELCAVNLYGPDAQVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKITAQSIEELCAVNLYGPDAQVDR 25 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 128.4 0.0001019 127430000.0 79074.0 105910.0 98268.0 87258.0 117850.0 114490.0 113140.0 110020.0 93037.0 123580.0 False True 78648.2743699473 109435.15032605299 112103.28023923202 98304.85385323565 132857.498948324 106575.57578047056 107666.98596322823 118230.25107024002 70109.27798192861 115693.01859783905 0.679801385797849 0.9459097156628001 0.9689718670831354 0.8497042867811543 1.1483622828629831 0.9211928003273762 0.9306264739922627 1.021930731025531 0.6059940248048652 1.0 16.819942283236887 4.739183584918701 22.495949990451884 0.9416786706101853 0.6798010924159523 0.24478906582612614 0.13229058923976195 16.85819205285459 608129.3670283793 0.02953206760179694 0.17566826178414607 54850.87814963342 -4.739183584918701 -0.26187757819423296 EKKEEWDR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKKEEWDR 8 2 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 ;;; 105.98 0.0024098 4871380000.0 5600200.0 5178700.0 4377390.0 4519480.0 4698120.0 6036600.0 6251500.0 5584000.0 9217600.0 6416800.0 False True 5570049.145440712 5351069.898909748 4993688.463044044 5091645.704607272 5296397.734061087 5619304.050627914 5949091.061950861 6000706.434977455 6946045.989511976 6007274.330301124 0.9272173766636531 0.8907650299768343 0.831273584070486 0.8475800212626623 0.881664036440899 0.9354165869009412 0.9903145311582022 0.9989066763123269 1.156272480262075 1.0 22.518279117311756 2.105745136712143 1.2338992583039516 1.0642526309114804 0.8716868450844042 0.7360980158843136 0.04663119909440798 0.2330812754021404 0.6668553569842013 0.0323244486496883 0.016383149037598795 127.568995758611 -2.105745136712143 -0.19256578582707617 EKKPGDLSDELR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKKPGDLSDELR 12 2 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 62.14 0.044927 226050000.0 207430.0 188730.0 137520.0 146730.0 150170.0 207550.0 188640.0 178400.0 283950.0 198430.0 False True 206313.21992763947 195011.7639603056 156881.620654732 165306.0029554343 169293.2593726754 193202.55702014753 179514.76252521953 191713.11389684444 213974.327235064 185766.02751553012 1.110607911935844 1.0497708680560687 0.8445118989348933 0.8898613226878345 0.9113251848943286 1.04003169795939 0.9663487179334338 1.0320138534523873 1.15184853816813 1.0 17.50312716336838 1.5700604979479804 3.7727819650172263 1.080489774277391 0.968358136548534 0.19899654451040139 0.08285191585943287 0.280565228297021 9.091056234945889 0.054398405145489145 0.02285263859489148 37.15869881812096 -1.5700604979479804 -0.11213163772885693 EKLCYVALDFEQEMATAASSSSLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKLCYVALDFEQEMATAASSSSLEK 25 1 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L4N8;Q6S8J3 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E 0 ;; 328.27 8.044599999999995e-88 3129650000.0 1833854.0 1877050.0 1615540.0 1702493.0 1523120.0 2272043.0 2233851.0 1965999.0 3083010.0 2384590.0 False True 1823980.7338243318 1939526.4745493124 1842993.9894745904 1918028.4392394582 1717080.3037604701 2114982.015223933 2125791.0929904813 2112711.828520642 2323243.495717467 2232403.4246497876 0.8170479912744589 0.8688064411357813 0.8255649355867268 0.8591764454672222 0.769162188518789 0.9474013486409718 0.9522432502646643 0.9463844237078599 1.040691601734991 1.0 21.090166334013333 2.5978484902938765 5.36969708225294 0.9728078430417805 0.8322176306702084 0.8130714135271704 0.03592208922612783 0.10133784410288152 4.050407002181832 0.011656683426738226 0.010923837418029787 396.13981123087694 -2.5978484902938765 -0.1405902123715721 EKLDQLKQEFEFWYPVDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKLDQLKQEFEFWYPVDLR 19 2 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8;A0A6I8PRP1 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 123.43 1.7574e-05 290390000.0 402060.0 417510.0 413290.0 435080.0 470970.0 519060.0 513860.0 483090.0 799860.0 570240.0 False True 399895.3536330657 431406.56795987516 471477.63961892226 490161.08339024207 530945.2378421054 483178.60393581184 489002.6286641715 519140.62888131436 602745.2205748834 533846.7949929746 0.7490826158061478 0.8081093152681612 0.883170310360535 0.9181680736637045 0.9945648130173613 0.9050885169071221 0.9159980602123999 0.9724524596764624 1.129060296377382 1.0 19.02606624665581 6.497679593462826 0.29911935947270124 1.0221973058777376 7.995037902947142e-11 0.720672307509246 0.053161014831836585 12.477734432156085 0.39500281266447074 0.05765292229264808 5.702932143274143 3145426.877307309 -6.497679593462826 -1.0221973057977873 EKLDSVIEFSIPDSLLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKLDSVIEFSIPDSLLIR 18 1 F8W1A4;P54819-2;P54819;P54819-6;P54819-3;F8VZG5;A0A5F9ZHP2;F8VY04;A0A5K1VW67;P54819-4 F8W1A4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed 0 ; 177.41 8.5742e-14 504590000.0 1313560.0 1569300.0 1450320.0 1282040.0 1458730.0 2030090.0 1563540.0 1492030.0 2312600.0 1605160.0 False True 1306487.9389102352 1621533.2018381155 1654512.4495925736 1444346.1325494768 1644490.6189298974 1889754.6566178342 1487905.5968971702 1603372.854974826 1742690.7172523635 1502717.3145533856 0.869416973011008 1.0790673576021466 1.1010137659086614 0.9611562457964644 1.0943446268992032 1.2575583167346933 0.9901433772588043 1.0669823522006572 1.1596929777642837 1.0 20.519142209816533 4.738546357019027 11.405862983459041 1.0793252852706003 0.869198262857706 0.3698297945811547 0.08202690739093674 0.06814549413718274 601.8944527883381 0.01920012863964863 0.11068995075428548 54770.456036388525 -4.738546357019027 -0.21012702241289438 EKLEAEMEAAR ddPTM_BT-474_Trastuzumab_2h_R1 6 EKLEAEMEAAR 11 1 Q8WXF1;Q8WXF1-2 Q8WXF1 PSPC1 Paraspeckle component 1 0 ;;;;; 155.86 2.8578000000000007e-05 3889480000.0 4878280.0 5005640.0 4517530.0 4667480.0 4422540.0 5395490.0 5395720.0 5168390.0 7408440.0 5655630.0 False True 4852015.882507859 5172249.701426718 5153558.956925324 5258382.489432495 4985724.254551729 5022512.475917305 5134708.4099479355 5554081.506352646 5582729.230009986 5294682.851371551 0.9163940539424336 0.9768762070587255 0.9733461099733915 0.9931439969195411 0.9416473837068847 0.9485955281752632 0.9697858311981472 1.0489922932615123 1.054402952305976 1.0 22.33611283948009 1.786831667475083 5.343057403996161 1.0385917826766629 0.9607872328635068 0.6653053945167933 0.0241849537093752 0.11169880283700706 6.3655233826949935 0.011461525709559443 0.006340849584468508 61.21130907277794 -1.786831667475083 -0.0778045498131561 EKLEAYQHLFYLLQTNPTYLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKLEAYQHLFYLLQTNPTYLAK 22 1 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 172.0 3.2379e-12 939960000.0 737940.0 691300.0 641860.0 657660.0 566930.0 907510.0 807580.0 706020.0 996580.0 885800.0 False True 733967.0130328408 714309.5026003246 732228.3088528672 740919.6885686013 639125.1750426245 844775.9697487546 768514.27014481 758706.7974969168 750986.2124878321 829267.4856284652 0.8850787300271391 0.861374062024126 0.8829820552990134 0.8934628469209678 0.7707105199696329 1.018701425521991 0.9267386982649959 0.9149120285620826 0.9056019022845118 1.0 19.661478001906563 2.73168675605148 24.999554924849935 0.9430694556281125 0.8621468668081643 0.5001572515678716 0.04661170521099183 529.7498093850513 1926643.3784426304 0.014751828512894994 0.014191143486748914 539.121629533333 -2.73168675605148 -0.08092258881994818 EKLEDFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKLEDFFK 8 1 G3V5X9;Q9UNH7;A0A0A0MRI2;Q9UNH7-2 G3V5X9;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed 0 ; 74.6 0.036988 714970000.0 2828600.0 2941800.0 2602700.0 2324800.0 2295400.0 3376000.0 3285800.0 2950000.0 5222900.0 3425000.0 False True 2813371.1318870015 3039716.034644346 2969137.536926055 2619119.441632884 2587705.5840982865 3142625.06624918 3126853.3010250586 3170143.979796477 3935786.2782743983 3206413.5677099726 0.8774199186963636 0.9480112189068979 0.9259995550251552 0.8168376868188794 0.807040492267637 0.9801059657109827 0.9751871475700696 0.9886884248873113 1.2274730614632925 1.0 21.61252908764386 1.8471054218726468 1.3563933766226621 1.0969397252109683 0.8857541281682203 0.5571151007577677 0.07479879970730434 0.31899641602472284 1.0971684240030206 0.05761134238908219 0.024125216862226125 70.32430063657885 -1.8471054218726468 -0.21118559704274797 EKLEDPDPGVQSAAVNVICELAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKLEDPDPGVQSAAVNVICELAR 23 1 O14617-5;O14617;O14617-4;A0A2R8Y4J3;A0A087WYN6 O14617-5 AP3D1 AP-3 complex subunit delta-1 0 75.539 0.015569 51043000.0 55684.0 54890.0 44676.0 44312.0 44474.0 51482.0 62116.0 45641.0 74605.0 59478.0 False True 55384.203531073974 56716.98046829431 50965.99246924669 49921.89465658827 50137.50028194959 47923.17051559254 59111.21177383664 49046.96318030195 56219.597405782464 55682.063118322294 0.9946507084944863 1.0185861890169703 0.9153035935637993 0.8965525316564891 0.9004246156506321 0.8606572355941194 1.0615844396467051 0.8808395456913836 1.009653634534301 1.0 15.76492504611379 -3.5151905306835824 7.767955134677939 0.9997476126238904 0.9473883465980791 0.0 0.06690208923554516 0.0 0.0 0.0 0.014320317277281764 0.0003053581173213823 3.5151905306835824 -0.05235926602581131 EKLEMEMEAAR ddPTM_BT-474_Trastuzumab_2h_R1 8 EKLEMEMEAAR 11 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;;;;;; 170.66 1.4093e-05 13631490000.0 12275800.0 12821800.0 11615660.0 11053790.0 10177750.0 12822720.0 13817900.0 11743980.0 17393600.0 13215880.0 False True 12209708.456769599 13248565.862058233 13251043.962873362 12453198.68062937 11473826.134249508 11936315.547836116 13149475.38749592 12620375.42232209 13107180.342299026 12372431.223715868 0.9868479554257407 1.0708134579615172 1.0710137501086563 1.0065280182571301 0.9273703710113268 0.9647510123116472 1.0628044844000093 1.020040054708969 1.0593859933668306 1.0 23.56062568673734 -0.27367391055762447 6.850642518451812 1.0000027933605402 1.0192624657153437 0.01458672163937258 0.0463364133336494 0.0 2.48351502744074e-18 0.047452906579251865 0.011184757352151143 0.5325079420875525 0.27367391055762447 0.019259672354803525 EKLETAQRPVPEALSPAFSEDSESHGSSS(ph)ASSPLSAEGRPSPLEAPNER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKLETAQRPVPEALSPAFSEDSESHGSSSASSPLSAEGRPSPLEAPNER 49 3 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 EKLETAQRPVPEALSPAFSEDS(0.02)ES(0.02)HGS(0.077)S(0.077)S(0.263)AS(0.263)S(0.263)PLS(0.016)AEGRPSPLEAPNER 89.531 8.965499999999999e-06 189000000.0 14982.0 27961.0 25592.0 34487.0 35476.0 30008.0 35165.0 25755.0 25613.0 35287.0 True False 14901.338576656683 28891.66498221855 29195.131150348323 38853.050663968235 39993.658317273985 27933.61759123385 33463.93460665474 27676.968881240053 19301.019346616275 33034.953449279375 0.451077934755853 0.8745786497498089 0.8837648642421557 1.1761194313054428 1.210646728432015 0.845577628378441 1.0129856746441008 0.8378086236366045 0.5842605280570573 1.0 15.011705691313491 4.799900576817364 2.3314907516469976 0.9495631388794131 0.2793227042164987 0.4294421727648521 0.16940014886361035 0.7425914948959897 4.178659993420279 0.04459656986474672 1.0733429948071187 63081.291573460025 -4.799900576817364 -0.6702404346629145 EKLETAQRPVPEALSPAFSEDSESHGSSSASS(ph)PLSAEGRPSPLEAPNER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKLETAQRPVPEALSPAFSEDSESHGSSSASSPLSAEGRPSPLEAPNER 49 3 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 EKLETAQRPVPEALSPAFSEDSESHGS(0.14)S(0.14)S(0.14)AS(0.134)S(0.436)PLS(0.009)AEGRPSPLEAPNER 117.62 1.1138e-08 189800000.0 19698.0 39168.0 41138.0 45576.0 46657.0 45143.0 51282.0 43190.0 39830.0 49062.0 True False 19591.948156653547 40471.683202443994 46929.872822093996 51345.91692698745 52598.49239229484 42022.3706651916 48801.293743735754 46413.05711437618 30014.43019465609 45930.82115590853 0.42655340495982497 0.8811443423810359 1.0217512258880428 1.1178967768222083 1.1451676906396562 0.914905712714127 1.0624955643201681 1.0104991799913774 0.6534703591031932 1.0 15.48717495598806 4.7291123438028055 2.6831852278392927 1.0019032638535839 0.31978409712556455 0.6285941988124406 0.12943202519387378 0.2769786344827089 2.6943120064958896 0.031808217913014414 0.41727209895030987 53593.52759454638 -4.7291123438028055 -0.6821191667280193 EKLHGTVVEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKLHGTVVEGR 11 1 O43251-10;O43251-7;A0A0G2JRA5;B0QYV1;A0A0G2JRD1;S4R469;B0QYY4;O43251-9;O43251-8;O43251-6;S4R3K7;O43251-4;O43251;O43251-2;O43251-5;Q9NWB1-2;A0A286YEU2;F8VZG9;B7Z1U7;J3KNW3;O43251-3;I3L1D4;A0A087X2B1;Q9NWB1-3;Q9NWB1-4;F8VZY7;F8VR27;Q9NWB1;Q9NWB1-5;F8VRS4 O43251-10 RBFOX2;RBFOX1 RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog;RNA binding protein fox-1 homolog 1 0 138.94 2.8344e-05 104970000.0 65315.0 88345.0 66091.0 76455.0 70039.0 82911.0 87078.0 90270.0 109840.0 92458.0 False True 64963.351297178735 91285.50991931971 75396.03832672987 86134.19516089215 78958.05149632295 77179.55772150069 82865.70446973639 97006.40578177209 82771.40378059306 86557.25128272364 0.7505246566227903 1.0546257946795476 0.8710539811443679 0.9951124127030138 0.9122060870258083 0.8916590646970477 0.9573513858367628 1.1207195739721236 0.9562619255345253 1.0 16.401367065131137 1.973429439894189 13.299008712739926 1.0390788636487593 0.9211448048625643 0.2580097780853844 0.08420750061407914 2.751674007895722 1375.0401021551922 0.03170445968234197 0.02070152531632812 94.0652989120346 -1.973429439894189 -0.117934058786195 EKLQEEGGGS(ph)DEEETGSPSEDGMQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610;Q13610-2 Q13610 PWP1 Periodic tryptophan protein 1 homolog 1 EKLQEEGGGS(1)DEEETGSPSEDGMQSAR 200.59 2.9257e-25 606690000.0 263470.0 227660.0 219490.0 218810.0 236900.0 275290.0 279760.0 269790.0 376600.0 298700.0 True False 262051.50679426861 235237.52547662408 250392.28415871976 246511.32356490497 267067.81078369066 256259.8502629555 266226.9400130167 289923.09976586106 283791.9761814581 279636.7102700643 0.93711410973612 0.8412254787629246 0.8954199322288507 0.8815413517303652 0.9550527558622937 0.9164027498945608 0.9520457444800545 1.0367848323128337 1.0148595150736137 1.0 18.09319424233204 2.2084124824826157 1.0605629267625134 1.0254043210846535 0.8907556255229858 0.7209531006645091 0.031062022475961248 0.2503033280029828 0.5351186526886932 0.021756184780372927 0.0119608331024879 161.58925642307304 -2.2084124824826157 -0.1346486955616677 EKLQGQDSER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKLQGQDSER 10 1 A0A0C4DGG1;Q9UKS6;E9PIY1;E9PJ75;E9PNM9 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 0 62.924 0.07471900000000001 45024000.0 77533.0 83296.0 75999.0 76958.0 82332.0 83873.0 94334.0 72292.0 117790.0 97321.0 False True 77115.57094272615 86068.4570065046 86698.99860484994 86700.87490931849 92816.49218000338 78075.056925805 89770.70402912464 77686.79613133776 88762.23280513537 91109.89045930006 0.8464017523671006 0.9446664524852267 0.9515871237226378 0.9516077175841723 1.018731245445473 0.8569328371729533 0.9853014154289467 0.852671381116866 0.9742326805319405 1.0 16.475320054236196 4.739956850244669 23.759118530211193 0.9410494744292328 0.8464016962042527 0.2427695563762945 0.0526221236503644 89.57714947488114 1523962.2837942778 0.011990302209761475 0.07499615010043768 54948.62763960254 -4.739956850244669 -0.09464777822498016 EKLQSFDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 6 EKLQSFDSPER 11 1 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER 193.77 4.8924e-07 3619950000.0 5352320.0 5136300.0 4751030.0 4615050.0 4700140.0 5958680.0 6111030.0 5713030.0 7327030.0 6414080.0 True False 5323503.70381865 5307258.640541086 5419933.727306951 5199314.856808262 5298674.969087609 5546770.476823954 5815416.132498378 6139365.30877853 5521381.6336718835 6004727.923029832 0.8865520256798823 0.8838466469373653 0.902611041962446 0.8658701815393529 0.8824171614446827 0.9237338557090187 0.9684728778792142 1.0224218961249394 0.919505713572104 1.0 22.51766744756346 2.3703532911613965 2.473645393906355 0.9854759558825608 0.8846148432800935 0.7413711670935521 0.025940077030296778 0.13324718487428064 1.669898994802076 0.010244928585378427 0.007985502044502739 234.61365813819407 -2.3703532911613965 -0.10086111260246722 EKMLRAAR ddPTM_BT-474_Trastuzumab_2h_R1 6 EKMLRAAR 8 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 0 ;;;;; 89.29799999999999 0.022526 16355440000.0 9488330.0 12760770.0 13901270.0 11972490.0 8148000.0 9824340.0 14878010.0 8158240.0 19419120.0 13030460.0 False True 9437245.88553256 13185504.51540165 15858447.983995086 13488206.006432958 9185599.503020313 9145206.499808801 14158303.816782447 8767049.295503322 14633538.078876482 12198844.886861926 0.7736179919540095 1.080881398008622 1.2999958710086172 1.105695345053503 0.7529892861342259 0.7496780707211161 1.1606265960501592 0.7186786434956128 1.1995839126241128 1.0 23.54024120913961 3.2751148298893566 24.957060888355294 0.9105445931445569 1.0829608091924685 0.09410821128260938 0.19619371039718225 326.0240989079907 222587.8930160495 0.05349990147509017 0.072437081666069 1884.1472026904712 -3.2751148298893566 0.17241621604791157 EKNFDEFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKNFDEFSK 9 1 Q15648;Q15648-3 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 69.65 0.049831 227890000.0 383160.0 367710.0 306140.0 309600.0 320960.0 463280.0 416260.0 390570.0 633100.0 457260.0 False True 381097.10913307825 379949.0050646112 349241.85098341823 348795.3282559969 361832.35352103575 431254.5440438152 396123.91353237914 419716.3166742741 477080.9881053671 428077.2753200189 0.890253071360026 0.8875710694536908 0.8158383336801389 0.8147952446091586 0.8452500853976418 1.0074221849814875 0.9253560895897773 0.980468576288021 1.1144739877834309 1.0 18.70751172587144 2.286464913343397 0.9959483878793562 1.0343834295810719 0.8482239384538527 0.6788394781270917 0.052040729876552665 0.3387391558059342 0.6477283413809127 0.038389133852954456 0.022663987021241186 193.4037601385443 -2.286464913343397 -0.1861594911272192 EKNGNEEGEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKNGNEEGEER 11 1 A0A0G2JP90;A0A087WW46;J3KN36;A0A0G2JN29;A0A087X117;Q5JPE7-3;Q5JPE7-2;Q15155;P69849;Q5JPE7 A0A0G2JP90 NOMO1;NOMO3;NOMO2 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 0 96.591 0.0062908 70611000.0 210810.0 201120.0 165000.0 159200.0 179130.0 201320.0 213970.0 202650.0 322900.0 220210.0 False True 209675.02238319293 207814.15762039257 188230.5657942899 179354.7036768562 201941.14371330725 187403.22225630475 203619.45365522275 217772.77203584943 243325.62163832408 206156.009268734 1.0170696606271212 1.008043172534918 0.9130491343035388 0.8699950310109998 0.9795549711581171 0.9090359428330604 0.9876959414255797 1.0563493773881334 1.180298466687613 1.0 17.653376989583943 1.724853720098604 2.8325292661590487 1.0959613840616158 0.9488363622008529 0.48541443098366854 0.05946700347457381 0.18539598090646445 3.186995840318868 0.03577640517946718 0.016232552080621326 53.07056608237693 -1.724853720098604 -0.14712502186076293 EKNGS(ph)EEDDDEKPGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKNGSEEDDDEKPGKR 16 3 Q6ZU65;Q6ZU65-2;H7C4P8 Q6ZU65 UBN2 Ubinuclein-2 1 EKNGS(1)EEDDDEKPGKR;EKNGS(1)EEDDDEKPGKR 145.77 6.5669000000000014e-06 310160000.0 310318.0 156656.0 120916.0 128429.0 135220.0 235518.0 242090.0 223326.0 508510.0 202372.0 True False 308647.2823675707 161870.20025944832 137939.92177928725 144688.09823187802 152439.465488268 219237.19500973762 230379.18182639102 239991.72014644966 383194.5241849002 189456.4457006138 1.6291199870565856 0.8543926793350789 0.7280824955265185 0.7637011118667326 0.8046148280917218 1.1571904782600244 1.216000759300873 1.2667382165803616 2.0225995624896216 1.0 17.531506698591272 2.0140533565040055 1.529480587645659 1.47974047673399 0.9387874692082673 0.25829602779336425 0.3407118126875022 0.49755890078838344 2.1748119601000964 0.22052605374938666 0.10739797152943611 103.28882964439455 -2.0140533565040055 -0.5409530075257226 EKNLEEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKNLEEAK 8 1 O43776;K7EIU7;O43776-2;K7EJ19;K7EPK2;K7EMQ6 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;; 97.565 0.007425 2500010000.0 2218210.0 1945730.0 1886800.0 1689290.0 1703190.0 2140440.0 2429480.0 1977920.0 3561610.0 2151550.0 False True 2206267.403826298 2010492.4468313754 2152445.0396404024 1903153.9407931955 1920081.1509019588 1992476.4208537908 2311956.7708851257 2125522.4340742514 2683898.938628901 2014236.2369653706 1.0953369636275831 0.9981413351297683 1.0686159846291197 0.9448514061391674 0.9532551920497344 0.9891969890560787 1.1478081510281526 1.0552498237627497 1.3324648268032542 1.0 20.941801467123415 2.239108279237183 24.999065978660266 1.129899801309144 1.005138969323586 0.31378995397973464 0.09088153009610257 17.76583486974462 811007.193941528 0.03153065570146438 0.024889441446069888 173.4236327399839 -2.239108279237183 -0.12476083198555799 EKNLEEAKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKNLEEAKK 9 2 O43776;K7EIU7;O43776-2;K7EJ19;K7EPK2;K7EMQ6 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ; 68.893 0.031936 158166000.0 159691.0 135205.0 108527.0 123781.0 131842.0 171471.0 157719.0 150147.0 264534.0 150772.0 False True 158831.24139933818 139705.21669185144 123806.65826640552 139451.66190844812 148631.29721124243 159617.61336931706 150089.5294249105 161351.7315710175 199343.14027399343 141149.60187759664 1.1252687877722451 0.9897669907209674 0.8771307649437742 0.9879706357895295 1.05300542994187 1.130839982869634 1.0633365410060913 1.1431256583418488 1.4122826959643966 1.0 17.10686553400708 2.426584955722483 1.070940009619578 1.1869798000989336 0.9901168207597363 0.2976946989328124 0.11373069536907816 0.6094145252474206 1.3941506154514571 0.07079254906145914 0.04766552223132053 267.0453104146958 -2.426584955722483 -0.19686297933919727 EKPDQDAEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKPDQDAEGK 10 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 ;;; 147.28 2.4777e-05 1793170000.0 4651890.0 3363220.0 3385210.0 2799020.0 2836290.0 4000870.0 4236540.0 3830240.0 6500200.0 4360210.0 False True 4626844.7411135705 3475162.7445905753 3861818.143227202 3153375.6450100155 3197474.719492082 3724299.2739349417 4031602.3750455556 4116071.9583646273 4898312.808217516 4081937.664836416 1.133492258093802 0.8513512527462476 0.9460747469258487 0.7725193042937826 0.7833227702217302 0.9123851415022021 0.9876687754875655 1.008362277019137 1.199996964778201 1.0 21.960822720504694 1.8209686158657366 1.7796674437718643 1.0913254380634663 0.8899359761476495 0.3400453926799667 0.10686055143100844 0.3699416117820302 2.2455994215295663 0.0735985611150095 0.03176738768609342 66.21686505937755 -1.8209686158657366 -0.20138946191581675 EKPDQDAEGKAEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPDQDAEGKAEEK 14 2 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 ; 138.39 8.8305e-06 490690000.0 1259450.0 857270.0 750610.0 649370.0 705800.0 1289980.0 1212290.0 1000190.0 2407800.0 1148380.0 False True 1252669.2611380487 885803.7137193421 856289.3635809215 731580.1754185943 795679.4463956472 1200806.7188862928 1153646.9013024718 1074829.2566619103 1814429.9528670097 1075089.405222417 1.165176826274177 0.8239349298917934 0.7964820036560312 0.6804831038840377 0.740105374055877 1.1169366129488245 1.0730706634243155 0.9997580214638494 1.687701454458698 1.0 20.036025209704157 2.0591915342573595 1.1890277310957051 1.2599845908931273 0.841859038319255 0.3569814061016767 0.22114937558123113 0.5273697839313543 1.3878980614309255 0.15962537004449684 0.07767256189491518 114.60182514787363 -2.0591915342573595 -0.4181255525738723 EKPEEESLAAPTWLVHLQQVER ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPEEESLAAPTWLVHLQQVER 22 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 0 ; 255.41 2.6618e-37 918510000.0 735680.0 664950.0 606690.0 573360.0 573760.0 750320.0 757030.0 713960.0 973430.0 744050.0 False True 731719.1806217325 687082.4587792365 692106.6785559871 645947.3172120749 646824.9350580428 698452.1444632952 720409.566764563 767239.3206154209 733541.219793726 696564.0919867464 1.0504692806296063 0.9863879959983779 0.9936008567165071 0.9273336432971991 0.9285935673387395 1.0027105222595722 1.034232994568819 1.1014626355876227 1.0530850329960493 1.0 19.409896578070768 2.2309173909950633 3.0002244346938896 1.0630051114840535 0.9756511245110008 0.38180602236432093 0.040732251666069134 0.22481101549998272 4.1866571261929275 0.017196217759554468 0.012527613437330963 170.18347643595746 -2.2309173909950633 -0.08735398697305274 EKPELSEPSHLNGPS(ph)S(ph)DPEAAFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 EKPELSEPS(0.003)HLNGPS(0.997)S(0.998)DPEAAFLS(0.003)R 59.598 0.044974 74985000.0 84035.0 78742.0 56410.0 52585.0 75064.0 85824.0 83170.0 72078.0 100750.0 85616.0 True False 83582.56489716619 81362.87986945582 64352.03767549032 59242.25560833846 84622.95546081448 79891.18888796504 79146.74935974609 77456.8263646679 75921.51248083347 80151.91358045468 1.0428018641534726 1.0151083889941765 0.8028758740849674 0.7391246566917261 1.0557820977770154 0.9967471183051926 0.9874592610979944 0.9663752604848103 0.9472202108390733 1.0 16.290449343847886 EKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 EKPELSEPSHLNGPS(0.211)S(0.789)DPEAAFLSR;EKPELSEPSHLNGPS(0.203)S(0.797)DPEAAFLSR;EKPELSEPSHLNGPS(0.061)S(0.939)DPEAAFLSR;EKPELSEPSHLNGPS(0.161)S(0.839)DPEAAFLSR;EKPELSEPSHLNGPS(0.228)S(0.772)DPEAAFLSR 291.31 4.5949999999999996e-63 20814300000.0 4822230.0 5077580.0 4709150.0 4241950.0 4666140.0 5669790.0 5766610.0 5283490.0 6377100.0 5838290.0 True False 4796267.649480126 5246584.180838071 5372157.387334435 4778980.43506307 5260345.270621402 5277850.762550041 5487657.043710537 5677770.852818605 4805549.153762022 5465685.333788454 0.8775235595488752 0.9599133247580288 0.982888157524211 0.8743606964564488 0.962431049241409 0.9656338483159224 1.0040199368570042 1.038803097155823 0.8792217005348771 1.0 22.38197097385225 2.7854747773489783 2.549565586806873 0.988756535709876 0.9302520501995186 0.18034137572408504 0.050135501001803015 0.45000780585346206 5.774662625622689 0.01701148022082939 0.01746070651454088 610.2036166368872 -2.7854747773489783 -0.05850448551035736 EKPEVTDR ddPTM_BT-474_Trastuzumab_2h_R1 4 EKPEVTDR 8 1 O95104-2;O95104-3;O95104 O95104-2 SCAF4 Splicing factor, arginine/serine-rich 15 0 ;;; 102.06 0.004594300000000001 2052250000.0 2594530.0 2877020.0 2448290.0 2271370.0 2492310.0 2735820.0 2787040.0 2611530.0 3527390.0 2857860.0 False True 2580561.3387593827 2972779.871504685 2792987.9510818357 2558925.2091111895 2809690.905421272 2546699.202827558 2652220.227673283 2806415.629680642 2658111.9991043936 2675468.9280629572 0.9645267458320708 1.1111247977217142 1.0439246450542643 0.9564398906937986 1.0501676457350941 0.9518702221189208 0.9913104203357329 1.0489434581893986 0.9935125656753077 1.0 21.351360343417706 3.9585445170043223 24.784597133642002 1.0031592509322709 1.0477505303534052 0.13704703420842046 0.04506126516024971 729.052780286879 435872.8247279798 0.011070309665276832 0.019960805626773014 9089.594664448221 -3.9585445170043223 0.04459127942113428 EKPGVESMR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPGVESMR 9 1 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 ; 111.86 0.0018761 797310000.0 719030.0 785810.0 754380.0 703510.0 709200.0 875530.0 832770.0 764420.0 1011600.0 878540.0 False True 715158.8223717426 811965.2108178245 860590.1468114952 792574.293867494 799512.4162422683 815006.6718759317 792485.7336096638 821464.9020461091 762304.7347455212 822470.8250440635 0.8695248519404056 0.9872267636658404 1.046347323949624 0.963650344466665 0.9720860508327877 0.9909247198309655 0.9635426686012926 0.9987769499326611 0.9268471434286816 1.0 19.649604978438777 4.739482346313261 24.711809048407986 0.9842197288054437 0.8695248092098147 0.5731813977605196 0.029435093339352496 45.56525776775039 1221397.6971324277 0.006764149500726807 0.04090123889775907 54888.62434130265 -4.739482346313261 -0.11469491959562905 EKPHAGVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPHAGVSPR 10 1 A0A0C4DH79;A0A087WWP8;Q5VWQ0-4;Q5VWQ0 A0A0C4DH79 RSBN1 Round spermatid basic protein 1 1 EKPHAGVS(1)PR;EKPHAGVS(1)PR 80.507 0.014413 781540000.0 1186760.0 1154150.0 1021210.0 1001600.0 1030370.0 1386270.0 1304730.0 1215590.0 1719660.0 1490910.0 True False 1180370.6160214308 1192565.185051591 1164987.491483557 1128402.4573036372 1161581.5120185355 1290440.4178285692 1241615.2253473795 1306303.498440949 1295872.8352634257 1395758.8473677293 0.845683778575002 0.8544206524648992 0.834662444505091 0.8084508720340184 0.8322222095952819 0.9245439642114532 0.8895628551371533 0.9359091657591964 0.9284360530526607 1.0 20.41261827035595 1.7999249618929183 0.5856907505261645 0.991577767594637 0.8303613186080617 0.8290475472887477 0.02373242072768355 0.30815979641440655 0.2254894222646921 0.023751196609548438 0.01412048941107446 63.08483360613869 -1.7999249618929183 -0.16121644898657528 EKPLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EKPLPR 6 1 Q15050;Q5BJH2-2;Q5BJH2 Q15050 RRS1;TMEM128 Ribosome biogenesis regulatory protein homolog;Transmembrane protein 128 0 ;; 76.592 0.06808099999999999 854370000.0 1000990.0 1160750.0 1023270.0 995160.0 1076740.0 1042040.0 1067070.0 1074530.0 1369810.0 1103830.0 False True 995600.781060443 1199384.8620618072 1167337.5215777154 1121147.1539639458 1213856.4566620127 970006.2274983119 1015451.747496745 1154716.8849527803 1032238.6800136046 1033382.6243635906 0.9634386698475644 1.1606396641325851 1.1296275881323445 1.0849293645269147 1.1746437650909478 0.9386709284914587 0.9826483662061878 1.1174146513871506 0.9988930098851908 1.0 19.97894310045309 2.7444199243307543 24.93754313596708 1.0211327805913846 1.106390761299134 0.3127438700040981 0.06894176798653658 660.9030122637977 2812842.299995441 0.02159427346335913 0.022338449368279247 555.1622462886077 -2.7444199243307543 0.08525798070774937 EKPPITVVGDVGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPPITVVGDVGGR 14 1 O60256;O60256-2;O60256-3;O60256-4;E7EPA1;I3L0S1;I3L4G9;C9J168;B4DP31;Q14558;Q14558-2 O60256;C9J168 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 0 ; 198.15 2.0476e-08 818290000.0 1211380.0 1286680.0 1099400.0 1056240.0 1115600.0 1331010.0 1274790.0 1150790.0 1532900.0 1371710.0 False True 1204858.0646769719 1329506.365985516 1254185.963843895 1189959.8757012733 1257665.047320747 1239000.411560523 1213123.5375292858 1236667.7933932163 1155137.334807641 1284166.2934199858 0.938241465182986 1.035307010313112 0.9766538572693358 0.926640016794225 0.9793630729641246 0.9648286346629009 0.9446779157382341 0.9630121890987563 0.899523169800139 1.0 20.292400606019616 3.9925326314172835 24.81364166311413 0.9537917099268608 0.9915757841152558 0.1375041510435514 0.03393854957944293 487.3530517060659 1619469.8791567872 0.007863775310310482 0.015933848071008564 9829.52725966001 -3.9925326314172835 0.03778407418839502 EKPSEDMESNTFFDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPSEDMESNTFFDPR 16 1 O43395;O43395-3 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 ; 127.22 6.148300000000001e-05 591450000.0 1522860.0 1658070.0 1571810.0 1499850.0 1364950.0 1858540.0 1796770.0 1655860.0 2365000.0 1947600.0 False True 1514661.0909656528 1713257.85762552 1793107.1855825642 1689730.8562169152 1538768.2918075058 1730063.5043325706 1709853.3707720465 1779428.6814867067 1782177.4393763887 1823302.5005757518 0.8307239695483125 0.9396454275055937 0.9834392181310273 0.9267419178569337 0.8439456926766692 0.9488625742498906 0.9377782184975445 0.9759371694629987 0.9774447404167016 1.0 20.798122505290376 1.8514088559379709 1.3803566080689802 0.9907277799548702 0.9131755475915678 0.37067283427671494 0.043073951095759996 0.5043849745737295 1.7980343626562196 0.033683374852950095 0.014172278164754783 71.02460971725414 -1.8514088559379709 -0.07755223236330233 EKPTDMQNFGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPTDMQNFGLR 12 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 ; 153.39 6.4397e-05 800030000.0 1222080.0 1306840.0 1231320.0 1292070.0 1218480.0 1699300.0 1451660.0 1576680.0 2166600.0 1795990.0 False True 1215500.4570658512 1350337.3793985362 1404679.1531746977 1455645.929521078 1373646.205503213 1581831.3907219307 1381437.6599202722 1694339.8678188152 1632670.460952596 1681368.380575604 0.722923346904938 0.8031181001133483 0.8354380690172228 0.8657507458435423 0.8169811097749771 0.9408000108699572 0.821615105814793 1.0077148395277722 0.9710367340164107 1.0 20.681204416804228 4.362688907707136 0.22190474519730896 1.0335048792624997 0.5491891127578972 0.7408766745997128 0.046327513538642576 4.94489650582268 0.25245850492847216 0.08413304842395722 0.663718068818336 23050.95419368032 -4.362688907707136 -0.4843157665046025 EKPTHCSECGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKPTHCSECGK 11 1 O75362 O75362 ZNF217 Zinc finger protein 217 0 100.93 0.0021999000000000003 195960000.0 108760.0 165260.0 204860.0 184340.0 192010.0 213330.0 246570.0 214500.0 191800.0 243330.0 False True 108174.44824437193 170760.5791982205 233702.5073249591 207677.42509919422 216461.33536756624 198582.99922480405 234642.4671111292 230507.0792089302 144533.45998832618 227800.47107470606 0.4748649014377878 0.7496059090335261 1.0259087973892622 0.9116637209722337 0.9502233878022964 0.8717409507010182 1.0300350390152588 1.0118814861157004 0.6344739293402388 1.0 17.797411204873704 4.58365014444573 2.851472103712612 0.9367945632263478 0.4584832182399997 0.6088793780353032 0.11206048862630677 0.19536373703883064 2.5918591598710297 0.02675086775411988 0.1788830880296675 38339.826607784475 -4.58365014444573 -0.4783113449863481 EKPVCGTTYK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPVCGTTYK 10 1 Q14444-2;Q14444;G3V153 Q14444-2 CAPRIN1 Caprin-1 0 ; 116.71 0.000961 920610000.0 955840.0 932040.0 905540.0 775250.0 810080.0 1115630.0 1069260.0 968440.0 1451270.0 1097710.0 False True 950693.8636438064 963062.3879699218 1033032.1609052201 873396.5705118262 913238.8862796631 1038509.1240105368 1017535.8088301322 1040709.9104386764 1093623.954521681 1027653.2080031866 0.9251115612153652 0.9371472598633055 1.005234210198677 0.8498942675505353 0.8886644630382269 1.0105637932357008 0.9901548507859832 1.0127053585137538 1.0641955340621967 1.0 19.970922063911676 2.7218853772580758 22.76616156731013 1.0138808238655956 0.9228017300822783 0.5695521635394805 0.040971513567397866 204.47294567222352 279159.1468094428 0.013843617781966914 0.013097199984588248 527.0907287360798 -2.7218853772580758 -0.09107909378331736 EKPVDLQNFGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPVDLQNFGLR 12 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 ; 85.837 0.010442 1054480000.0 1685510.0 1758940.0 1643740.0 1641080.0 1562060.0 1860710.0 1951960.0 1750540.0 2267590.0 2075510.0 False True 1676435.401437766 1817485.254598318 1875164.3043557955 1848840.5597362763 1760979.0819450072 1732083.4973402012 1857536.2375886745 1881174.1838620056 1708772.8286492631 1943049.1748664896 0.8627858847437336 0.9353778988754624 0.9650627110271882 0.9515150638754747 0.9062967138060246 0.8914254563110662 0.9559903380810263 0.9681557256476869 0.8794285037931044 1.0 20.8898909825677 -4.999999999999999 0.25963408213544864 1.4484497364365998 0.923462203804503 0.26327346641814087 0.03626564527352999 287.5893530019887 2.826793802694027 68.9261615432106 0.04918733085307685 1.0000000000000021e-05 4.999999999999999 -0.5249875326320969 EKPYDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKPYDSK 7 1 P16422;B5MCA4 P16422 EPCAM Epithelial cell adhesion molecule 0 66.071 0.062809 547990000.0 751550.0 661270.0 744840.0 672280.0 791250.0 788470.0 749850.0 716190.0 1088300.0 807130.0 False True 747503.7383050554 683279.9722038442 849706.9977346599 757390.5790695783 892010.9973938167 733964.9247587365 713576.8907948249 769635.7345391314 820103.0474728645 755618.2723812418 0.9892610669000707 0.9042660787576882 1.1245188593135904 1.002345505333998 1.1805047998412603 0.9713435362616797 0.9443616133660606 1.0185509835723205 1.0853404125450892 1.0 19.52729806387493 4.25791280881325 24.989856128703913 1.0366003822747136 0.9467635816318426 0.2189358283664572 0.07073262856406216 380.4866640426584 491321.321786792 0.01715228234342807 0.04682209908292167 18109.76475198209 -4.25791280881325 -0.08983680064287103 EKPYFPIPEEYTFIQNVPLEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKPYFPIPEEYTFIQNVPLEDR 22 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ; 199.89 1.562e-22 13472400000.0 4042550.0 4024880.0 3959550.0 3659560.0 3454570.0 4205810.0 4258980.0 3902590.0 5345390.0 4153300.0 False True 4020785.3599695275 4158845.6977086575 4517020.222974433 4122859.9207768594 3894489.0126594137 3915072.2541118106 4052956.8665164355 4193821.082750485 4028090.2590563046 3888232.8381809737 1.0340906852303027 1.0695979049583575 1.1617154658586815 1.060342858146749 1.001609002016805 1.0069027285782075 1.0423647541674805 1.0785930928746732 1.0359694047902646 1.0 21.89068318344047 3.4798216500419477 24.93083306423153 1.0343833873545432 1.0906556995751056 0.3460804749517683 0.03704699980160065 130.20379630956268 1202084.2146036034 0.010879002004505202 0.014982485424552298 3018.7117836627945 -3.4798216500419477 0.05627231222056239 EKQAFER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKQAFER 7 1 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 60.973 0.085988 330640000.0 308510.0 348370.0 340850.0 336430.0 319940.0 311790.0 376000.0 314470.0 434960.0 394080.0 False True 306849.0164386834 359965.28485588805 388838.7172786895 379022.00350505457 360682.46256704896 290236.69117471384 357811.44354051416 337937.3482463043 327769.9361653934 368929.4770111381 0.8317281094603874 0.9757021525418003 1.0539648943989106 1.0273562486133678 0.9776460950995245 0.7866996519932493 0.9698640684374258 0.9159944360751143 0.8884352066980484 1.0 18.492985537632848 2.949251264126724 24.998974858140443 0.9096053936881112 0.9813080725957817 0.1357470289460615 0.07563210346415963 632.7331217050207 311685.8786707333 0.02303156182902904 0.024428920184931844 889.7157202671468 -2.949251264126724 0.07170267890767046 EKQDETQTK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKQDETQTK 9 1 P35221-2;P35221;P35221-3;E5RGY7 P35221-2 CTNNA1 Catenin alpha-1 0 ;;; 143.24 9.3406e-05 448367000.0 1217460.0 924019.0 839140.0 717700.0 859822.0 852278.0 1061780.0 1122120.0 1812240.0 1281620.0 False True 1210905.3306325225 954774.4138337185 957283.6180643666 808560.7464125619 969315.2351357301 793362.0279066116 1010417.6450065073 1205858.2924099055 1365637.7347718703 1199825.9143499136 1.0092341865183099 0.7957607869730267 0.7978520938873365 0.6738983853758935 0.8078798961938757 0.6612309489385123 0.8421368741264178 1.0050277110936217 1.1381965653840678 1.0 20.194393666221842 1.7084788711961714 3.027379611576338 1.0688233865668455 0.7852919100671891 0.5988953557030057 0.09473349550202394 0.14368155311735104 2.916134792487922 0.05636613770974738 0.02559870576057011 51.10682145199396 -1.7084788711961714 -0.2835314764996564 EKQEASES(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQEASESPVK 11 1 Q01167;Q01167-2;E9PPI7;Q01167-3 Q01167 FOXK2 Forkhead box protein K2 1 EKQEAS(0.009)ES(0.991)PVK;EKQEAS(0.047)ES(0.953)PVK 105.39 0.0014972000000000002 1217960000.0 899970.0 573940.0 555690.0 492090.0 530730.0 866580.0 889670.0 777690.0 1287990.0 843860.0 True False 895124.6615160662 593043.2459459432 633926.3218559333 554388.5435448757 598315.319616835 806675.3643098983 846633.2632305565 835725.1768298022 970582.122681774 790004.1323351061 1.1330632649607075 0.7506837264167429 0.8024341847202296 0.7017539793193305 0.7573572024849105 1.021102714900383 1.0716820692166067 1.0578744371368705 1.228578538966515 1.0 19.591500674161708 2.5981134849739114 4.081331248898833 1.0858622450575868 0.816862271148588 0.505961364986551 0.12281225758267107 0.1892833643472728 5.366414490272898 0.040935464056715755 0.038109763293893484 396.3815987272508 -2.5981134849739114 -0.26899997390899877 EKQEEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQEEEEAK 9 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 103.34 0.0031354 764650000.0 1854970.0 1155010.0 991940.0 952410.0 933080.0 1144980.0 1361120.0 1439730.0 2637500.0 1473900.0 False True 1844983.0476265438 1193453.8096317109 1131596.5299029597 1072985.0083472019 1051902.2072015454 1065830.2275930077 1295277.425616661 1547169.963400804 1987523.4656893164 1379834.440130724 1.337104651085352 0.8649253670742153 0.8200958730931179 0.7776186599934035 0.7623394347961696 0.7724334141797707 0.9387194491927219 1.1212721746923686 1.4404072024039496 1.0 20.39606374449342 1.6689783015918584 3.144544210787761 1.2337351337913145 0.8747163130303536 0.3398946927087537 0.18733847052659486 0.21125255061854215 4.86375416901912 0.11315226285240743 0.04979572875740036 46.66360654595775 -1.6689783015918584 -0.3590188207609609 EKQELQDDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQELQDDKR 10 2 P12270 P12270 TPR Nucleoprotein TPR 0 ; 86.31299999999997 0.0076735 151080000.0 148089.0 117525.0 112823.0 105865.0 118122.0 151884.0 143499.0 140191.0 217230.0 148438.0 False True 147291.7052782348 121436.74857963713 128707.49772490427 119267.49814541703 133164.1365360536 141384.61657647853 136557.40515058563 150652.76429547375 163696.57723286835 138964.55975583446 1.0599228000076524 0.8738684797980557 0.926189367641993 0.8582583815252908 0.958259694198489 1.0174149209330507 0.9826779244328318 1.084109247423774 1.1779735604566295 1.0 17.084357472610446 2.1615935585178243 1.2623988117066471 1.0952009875986355 0.9284601026113665 0.4521771774100969 0.0685417188447079 0.37579781200017115 1.1399779997602426 0.044338606379599396 0.02365884729136654 145.07532712685597 -2.1615935585178243 -0.16674088498726902 EKQLAAENR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQLAAENR 9 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 131.82 0.00029406 1178500000.0 1264460.0 1604250.0 1569990.0 1357340.0 1017000.0 1392640.0 1629130.0 1154550.0 2434100.0 1596760.0 False True 1257652.287854714 1657646.4914603948 1791030.9454022862 1529179.1048287943 1146508.9217687366 1296370.074721937 1550322.7580190368 1240708.3836861083 1834248.6702689533 1494853.4097449856 0.8413214832009936 1.1089023717336812 1.198131491507135 1.022962582725529 0.7669708041568605 0.8672222080579066 1.0371068814590416 0.829986656616562 1.2270425035066594 1.0 20.511572585250516 3.464346820498596 24.90383850192309 0.9363654000976896 1.0645885738081804 0.07164669031102855 0.1459892980065682 419.15661985564583 817145.6192836827 0.03959902954365226 0.0536492320108169 2913.042497723122 -3.464346820498596 0.12822317371049075 EKQPMVPESLADYITAAYVEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKQPMVPESLADYITAAYVEMR 22 1 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 161.04 1.6248e-11 200990000.0 105370.0 112850.0 120070.0 116100.0 104640.0 145230.0 145260.0 140130.0 182980.0 158530.0 False True 104802.69962770745 116606.14403073446 136974.81233285103 130798.24809599867 117965.28375012826 135190.59193464732 138233.21885291245 150587.21216572195 137887.0308063814 148412.47967563852 0.706158268204655 0.7856896150888517 0.9229332508439656 0.8813156978568348 0.7948474684066068 0.910911213329983 0.9314123660963468 1.014653299337336 0.9290797587085606 1.0 17.179252884516558 6.937381062718062 0.22594811718158095 1.01167961492099 1.642123827525519e-14 0.7075179668443109 0.05019912388541216 18.098293731937098 0.3559278837650367 0.08308089559871763 6.105556870392997 8657272.0005981 -6.937381062718062 -1.0116796149209735 EKQPPIDNIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKQPPIDNIIR 11 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 0 121.21 0.00037976 148360000.0 301020.0 314920.0 275300.0 253330.0 282500.0 383700.0 351820.0 304880.0 460030.0 359840.0 False True 299399.34176646586 325401.92182684026 314059.84704950376 285401.55202548986 318474.7004913156 357175.7221326454 334801.12251708395 327631.6937492709 346661.77058618184 336874.7031254763 0.8887557866134819 0.965943476336474 0.9322749501096416 0.8472038695027386 0.9453802779981755 1.060262818249097 0.9938446532519243 0.9725624711786013 1.0290525449667265 1.0 18.3618525709117 2.9899172387035398 24.909690363083318 1.0047491917804467 0.9120835490081559 0.6454317086844266 0.035933280155477115 323.2605649808839 798624.9933204527 0.010910774913965804 0.012331441977613372 977.0510115586965 -2.9899172387035398 -0.09266564277229083 EKQPVAGSEGAQYR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQPVAGSEGAQYR 14 1 Q9UGI8-2;Q9UGI8;F8W7T0 Q9UGI8-2 TES Testin 0 ; 81.656 0.011762 1040000000.0 432730.0 469700.0 442610.0 429580.0 475170.0 526330.0 482310.0 436450.0 565140.0 509940.0 False True 430400.2297608231 485333.6805603546 504925.64076491306 483964.7839541697 535680.0829467557 489946.04594755155 458978.8226968765 469020.11524819315 425868.8194880226 477395.19261840143 0.9015596227523325 1.0166287555147182 1.0576680464575137 1.0137613269621246 1.1220893951794428 1.0262902800933364 0.9614232187372573 0.9824567203446836 0.8920676749010213 1.0 18.864824512954296 2.2402208573887292 7.227322901594854 0.9601559172712452 1.028490880528203 0.22737434038799575 0.05727384364240698 0.19322345559205945 58.46439592900073 0.021006257503706268 0.016523595686841443 173.86847998258324 -2.2402208573887292 0.06833496325695776 EKQS(ph)S(ph)EEEEKETR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQSSEEEEKETR 13 2 Q92504;A2AAT0 Q92504 SLC39A7 Zinc transporter SLC39A7 2 EKQS(1)S(1)EEEEKETR;EKQS(1)S(1)EEEEKETR 122.94 0.0011274000000000002 3739800000.0 7231700.0 5516100.0 5831300.0 3772400.0 5815500.0 10344700.0 7346100.0 7171100.0 13656600.0 7035600.0 True False 7192765.330717402 5699700.053947132 6652296.353431778 4249985.453207109 6556069.453830956 9629595.237804491 6990741.078172786 7706243.8961079605 10291113.919064522 6586581.9845197955 1.0920330677766248 0.865350202478756 1.009977006141642 0.6452490021676942 0.995367471207289 1.4620018790378042 1.0613609751769386 1.1699913421285373 1.5624361684484234 1.0 22.651098562138877 2.9840239034094633 24.470949784934515 1.2370880506129611 0.8971107237348542 0.4328462876058996 0.19057988364004344 504.29681693428313 772444.4344409169 0.055354538298412595 0.06033624874568629 963.8820738808804 -2.9840239034094633 -0.3399773268781069 EKQSDDEVYAPGLDIESSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKQSDDEVYAPGLDIESSLK 20 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 ; 197.68 1.4870999999999999e-21 344704000.0 787530.0 640960.0 564230.0 512880.0 566020.0 792920.0 740350.0 738430.0 1212070.0 776980.0 False True 783290.0259828083 662293.9661314975 643668.6796249229 577810.5554132286 638099.2919366163 738107.3067329094 704536.4420883494 793535.3962715627 913371.5894058946 727392.4711939549 1.0768464852228978 0.9105042908189529 0.8848987377727373 0.7943587242040051 0.8772420903521709 1.014730473524653 0.9685781335238606 1.090931550293667 1.2556791905017524 1.0 19.472374467830896 1.9277161392507332 1.5680281437588142 1.1343959245475148 0.9097532482008694 0.45669470107449506 0.09258430317194771 0.3268118986026822 1.4975854323801987 0.06397190568062659 0.029180203835505306 84.66738357728042 -1.9277161392507332 -0.22464267634664536 EKQSDS(ph)KGKDQER ddPTM_BT-474_Trastuzumab_2h_R1 3 EKQSDSKGKDQER 13 3 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 EKQS(0.009)DS(0.991)KGKDQER;EKQS(0.002)DS(0.998)KGKDQER;EKQSDS(1)KGKDQER 130.95 0.00075237 1083310000.0 1517680.0 814980.0 683900.0 649870.0 670670.0 975080.0 1155350.0 1165070.0 2305970.0 1111730.0 True False 1509508.9795101003 842106.1166341859 780187.1754346361 732143.4753673275 756075.8491274707 907675.0146914258 1099461.3066343963 1252013.4395055848 1737694.5919149148 1040778.4396000606 1.4503653439344484 0.8091117999694359 0.7496188869308613 0.7034575732070967 0.7264522595395113 0.872111661959694 1.056383630561069 1.2029586623515138 1.6696104817300577 1.0 19.989231550439243 1.8240762404083308 2.1448700836628714 1.3444213948283368 0.8628970427660669 0.3364679467209216 0.253444739921598 0.3107186678002946 2.7270471805545884 0.1576015630347109 0.07201556958323373 66.69238374357965 -1.8240762404083308 -0.48152435206226984 EKQSEDTNTESK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKQSEDTNTESK 12 1 O95232;J3KPP4;H0YBV7;H0YAR4 O95232 LUC7L3 Luc7-like protein 3 0 146.59 5.9157e-05 291700000.0 568040.0 460170.0 417580.0 385860.0 419160.0 430810.0 551070.0 537520.0 840380.0 595450.0 False True 564981.7357551765 475486.48027136124 476371.63432957354 434709.8364368832 472537.541444034 401029.1187176569 524412.638808168 577632.4718712542 633279.6095150654 557447.8712096071 1.0135149220845021 0.8529703041821691 0.8545581729389223 0.7798215024009431 0.8476802331645361 0.7194020094604776 0.940738436529041 1.0362089474265073 1.1360337750342662 1.0 19.08847737460221 1.847722893526844 2.95048590051886 1.0669028129417186 0.8423766219506982 0.5957079060442748 0.07777262499495688 0.1687509863233367 2.614284679390236 0.04213065270896971 0.021507228680079416 70.42435750553564 -1.847722893526844 -0.22452619099102045 EKRT(ph)PAPEPEPCEASELPAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKRTPAPEPEPCEASELPAKR 21 3 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-2;Q9ULV3;A0A494C0L7;Q9ULV3-3;Q9ULV3-4 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 EKRT(1)PAPEPEPCEASELPAKR;EKRT(1)PAPEPEPCEASELPAKR 123.53 2.7019e-05 315810000.0 216355.0 206040.0 184226.0 185475.0 174564.0 264030.0 260640.0 217721.0 377860.0 251467.0 True False 215190.1687193003 212897.91684619006 210163.41947890213 208956.11598282005 196793.69067810982 245778.22755976676 248031.8474585098 233968.44658483667 284741.46606459294 235418.1607682696 0.9140763313120928 0.904339394001778 0.8927239036829168 0.8875955673976356 0.8359324957594109 1.0440070840655957 1.053579921995297 0.9938419611354455 1.2095135954480336 1.0 17.844866092348045 2.7226555499550367 21.52836884785935 1.0537669169815176 0.8882590280047378 0.6843254064711866 0.05875181124843797 77.78207287837374 105281.41960964419 0.018445533812124305 0.017475006927915582 528.0262945149461 -2.7226555499550367 -0.16550788897677982 EKS(ph)PSLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKSPSLGK 8 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 EKS(0.856)PS(0.144)LGK;EKS(0.5)PS(0.5)LGK;EKS(0.908)PS(0.092)LGK;EKS(0.882)PS(0.118)LGK 105.46 0.0026547 3139270000.0 3321560.0 2401840.0 2186460.0 1912850.0 1810250.0 2652180.0 2646030.0 2764040.0 4462100.0 3179110.0 True False 3303677.0900200047 2481783.7924570576 2494294.5629489915 2155016.6138710696 2040774.6073076213 2468841.039160175 2518031.4200837957 2970306.70031073 3362475.2440766953 2976216.4780269917 1.1100258043763318 0.8338720690446194 0.8380756512048215 0.7240792562574897 0.6856942774070325 0.8295233419300303 0.8460511655231012 0.9980143320353567 1.1297818115387104 1.0 21.50504803542656 1.6550072669481397 2.9916463564725397 1.0660472932401228 0.8256327168311485 0.42733505733090016 0.1095257805255057 0.20040570895004028 4.1872846638423304 0.07126926235653819 0.030494639647383446 45.18635052381692 -1.6550072669481397 -0.24041457640897435 EKS(ph)PSLGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKSPSLGKK 9 2 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 EKS(0.973)PS(0.027)LGKK 59.198 0.054186 464160000.0 856940.0 681530.0 600580.0 555120.0 520350.0 739990.0 763740.0 773260.0 1712900.0 1072100.0 True False 852326.3302549854 704214.3140564146 685136.4436650599 625398.1350822648 586613.4881439148 688836.2330490914 726794.9784298723 830964.5877347183 1290778.7466840667 1003677.6601290109 0.8492032493235218 0.7016339428795259 0.6826259773252238 0.6231065609270183 0.5844640280909636 0.6863122099983272 0.7241318675325018 0.8279197801691707 1.2860490952026893 1.0 19.936864578851008 1.4338093710068929 3.6253900098550083 1.1387345400251927 0.6892061793705491 0.7776973088254591 0.09420425011805454 0.09487233701924477 2.239169026430841 0.06822127410130967 0.023947824898438535 27.1524717805188 -1.4338093710068929 -0.44952836065464363 EKS(ph)PVREPVDNLSPEER ddPTM_BT-474_Trastuzumab_2h_R1 7 EKSPVREPVDNLSPEER 17 2 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 EKS(1)PVREPVDNLSPEER;EKS(0.993)PVREPVDNLS(0.007)PEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER 260.03 1.6477000000000002e-27 11242900000.0 3599420.0 3404390.0 3158750.0 2789670.0 3061570.0 3977400.0 3906660.0 3551530.0 4869090.0 3731240.0 True False 3580041.1226531593 3517703.063152786 3603474.5436528074 3142841.9359686943 3451442.7921529035 3702451.699792506 3717679.930909537 3816563.2029039236 3669168.011963293 3493109.068724716 1.0248867276166045 1.0070407175797258 1.0315951986487453 0.8997262536426041 0.9880718649913144 1.0599301730776527 1.0642896794135341 1.092597776884561 1.050401788141947 1.0 21.736080259423584 2.7329972446193502 7.524343607352255 1.062863209163906 0.9883898825975684 0.3672262810545648 0.04050483496809241 0.12855591423314477 59.47289922111255 0.013122464495502613 0.012978611709951174 540.7508921415223 -2.7329972446193502 -0.07447332656633765 EKS(ph)QDGGELTSPALGLASHQVPPSPLVSANGPGEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKSQDGGELTSPALGLASHQVPPSPLVSANGPGEEK 36 1 Q9NSC5-2;Q9NSC5;M0R1B8;M0R2U7 Q9NSC5-2 HOMER3 Homer protein homolog 3 1 EKS(1)QDGGELTSPALGLASHQVPPSPLVSANGPGEEK;EKS(0.972)QDGGELT(0.014)S(0.012)PALGLAS(0.001)HQVPPSPLVSANGPGEEK;EKS(1)QDGGELTSPALGLASHQVPPSPLVSANGPGEEK 173.32 2.3446e-18 484800000.0 547370.0 336801.0 272673.0 322349.0 273106.0 457020.0 417515.0 401402.0 699540.0 450298.0 True False 544423.0207385247 348011.21768449614 311062.9882837968 363158.3503488122 307884.4302739156 425427.283109361 397318.2043878131 431356.65551805607 527147.7403557549 421559.596120486 1.2914497161225176 0.8255326669993085 0.7378861521512889 0.8614638444738851 0.7303461553415074 1.0091747098736892 0.9424959318782903 1.0232400341202765 1.250470266142609 1.0 18.685377074642705 1.734904020041185 1.7277491872285273 1.1223988440313153 0.8879796731179206 0.20672799880818515 0.16226187845009457 0.4889316884986036 2.8984146991442037 0.1192482718847065 0.047515113350868506 54.313028533621754 -1.734904020041185 -0.2344191709133947 EKSATRPS(ph)PS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKSATRPSPSPER 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 EKS(0.002)AT(0.003)RPS(0.995)PS(1)PER 91.475 0.032046 418430000.0 424480.0 616470.0 545660.0 640460.0 690040.0 696810.0 769840.0 675980.0 1085300.0 832640.0 True False 422194.64684416197 636988.8312860162 622484.1850382566 721542.1703321565 777912.5038124864 648641.1648143051 732599.8981256109 726425.0601568886 817842.3572749248 779500.2023410315 0.5416222415032186 0.8171759665654755 0.7985683431111152 0.9256471879868501 0.997963183943023 0.8321244341775353 0.9398328517753204 0.9319113169890846 1.0491881269802654 1.0 19.57218987185168 5.226961214740604 0.7667850404711374 0.9525057086093487 2.411786163794096e-13 0.8057709942607123 0.06115488418055275 2.163851567705237 0.5749076270298199 0.021307929361583742 2.0964303704362246 168640.24122023644 -5.226961214740604 -0.9525057086091075 EKSTFREES(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 5 EKSTFREESPLR 12 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 EKS(0.075)T(0.075)FREES(0.849)PLR;EKSTFREES(1)PLR;EKSTFREES(1)PLR;EKS(0.001)T(0.001)FREES(0.998)PLR;EKS(0.172)T(0.135)FREES(0.693)PLR 179.14 1.1005e-05 8194640000.0 3071790.0 4489800.0 4355390.0 5581720.0 5143860.0 5109580.0 5999960.0 4653290.0 7857240.0 5883750.0 True False 3055251.823947951 4639240.278858589 4968591.054271478 6288365.179693349 5798900.080953119 4756366.761257556 5709719.012726973 5000542.128727846 5920928.483621887 5508244.037668192 0.5546689295271915 0.8422357918663533 0.9020281273476102 1.1416279192952035 1.0527674593386336 0.8634996432131703 1.036576987816987 0.9078287190130974 1.0749212349945914 1.0 22.393161047485226 4.708429213327504 1.60986316688458 0.9973444434463062 0.41256730298996297 0.7497898386230546 0.07921839891603696 0.4773519142833556 1.2398781720196337 0.02127673675062685 0.42967893114898076 51100.97815706881 -4.708429213327504 -0.5847771404563433 EKT(ph)PELPEPSVK ddPTM_BT-474_Trastuzumab_2h_R1 7 EKTPELPEPSVK 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 EKT(1)PELPEPSVK;EKT(0.998)PELPEPS(0.002)VK;EKT(1)PELPEPSVK;EKT(0.995)PELPEPS(0.005)VK;EKT(0.999)PELPEPS(0.001)VK;EKT(1)PELPEPSVK;EKT(1)PELPEPSVK 156.24 0.00039304 35357050000.0 55034210.0 36126710.0 32656990.0 27946690.0 28852870.0 48378530.0 46629680.0 44902860.0 84004050.0 45663740.0 True False 54737911.92823552 37329165.70329259 37254810.332354374 31484738.088561337 32527111.97014111 45034236.091909975 44374024.23572409 48253739.425303 63302377.47409996 42749441.01850528 1.2804357349267024 0.8732082762704109 0.8714689466051169 0.7364947315903451 0.7608780651906266 1.0534461976336873 1.0380024435059996 1.1287572018641139 1.4807767298453742 1.0 25.349402219997142 1.9632517137000807 1.5871744600099722 1.2317112446992966 0.9012104974848937 0.3184215673930896 0.18179333024590733 0.42791074468297674 2.007152036129717 0.12103642500612163 0.05699730704726639 91.88650091821364 -1.9632517137000807 -0.3305007472144029 EKT(ph)PPRPQGQRPEPENR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKTPPRPQGQRPEPENR 17 3 A9X3U0;Q96GF1 A9X3U0 RNF185 E3 ubiquitin-protein ligase RNF185 1 EKT(1)PPRPQGQRPEPENR 83.06299999999997 0.0060162 69113000.0 40370.0 32773.0 36983.0 25264.0 44280.0 58715.0 38737.0 45472.0 62501.0 43798.0 True False 40152.65240552868 33863.82949330315 42189.88493800138 28462.419809623727 49918.79553187765 54656.17025024312 36863.14332028962 48865.35154213737 47098.46602049208 41002.77414264569 0.9792667263400398 0.8258911793502881 1.0289519628897745 0.6941583930542119 1.2174492232699612 1.3329871305804395 0.8990402257185186 1.1917572057963282 1.1486653526573571 1.0 15.32343390163246 3.2212720928612937 24.999771912018865 1.1377562863043276 0.8885462278256916 0.4356981248835087 0.13896752359911319 218.83228626465421 316438.0205661815 0.038688643034190506 0.04634506913133909 1664.4551331501002 -3.2212720928612937 -0.24921005847863598 EKT(ph)PS(ph)PKEEDEEPES(ph)PPEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 EKT(1)PS(1)PKEEDEEPES(1)PPEKK 133.75 0.00011974 861830000.0 1087400.0 463570.0 477590.0 266380.0 315360.0 682800.0 627580.0 655270.0 1647400.0 522160.0 True False 1081545.559221498 478999.64721601736 544830.5207133036 300103.6806874435 355519.226714836 635599.6431383124 597221.5578115854 704169.5747936384 1241420.344029035 488835.3017563333 2.212494791876977 0.9798794102942698 1.1145482307758572 0.6139157290997661 0.7272781352686543 1.300232697709577 1.221723463231546 1.4405047513214204 2.539547245398897 1.0 18.89898894909792 1.5389577236688967 4.128356336739788 1.8295782407139165 1.1295788610783413 0.15845968503861318 0.5363453306132028 0.2559131479219889 9.6514385278212 0.32165102420959557 0.13456496503416787 34.59057040483638 -1.5389577236688967 -0.6999993796355752 EKT(ph)PS(ph)PKEEDEEPESPPEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 EKT(1)PS(1)PKEEDEEPESPPEKK 117.08 0.00016176 853800000.0 704890.0 308300.0 284330.0 199060.0 265860.0 428270.0 423410.0 431870.0 1071200.0 375950.0 True False 701094.9505606418 318561.5791287144 324361.1925593363 224260.9755899186 299715.69512432266 398664.7029391404 402928.040716726 464098.3323914252 807217.1133446041 351956.5491330115 1.9919929101693854 0.9051162136730792 0.9215944222613504 0.6371836982216968 0.8515701607559917 1.132710000484966 1.1448232507940954 1.3186239424572637 2.2935135468655266 1.0 18.425037806084482 1.526087242107524 4.121128607319842 1.6909885961367956 1.0512277793795122 0.19060074320057252 0.4483384633543206 0.23798028557827264 8.856703931303498 0.2714808009986221 0.1118575013602211 33.58050647872917 -1.526087242107524 -0.6397608167572835 EKT(ph)PSPKEEDEEPES(ph)PPEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 EKT(0.713)PS(0.287)PKEEDEEPES(1)PPEKK 146.28 8.384600000000001e-08 541350000.0 839880.0 371760.0 339000.0 287730.0 283210.0 644670.0 628690.0 629360.0 1473400.0 518880.0 True False 835358.1793994404 384133.8068663342 386728.25335917785 324156.58849837835 319275.11478281545 600105.4802899477 598277.8628709725 676326.0390253254 1110300.3125484888 485764.63416448183 1.719676815987771 0.7907817487105597 0.7961227025601665 0.6673120389999772 0.6572629877264956 1.2353832248865397 1.2316208731416072 1.3922916397333256 2.2856754783275077 1.0 18.88989793358969 1.997857213454839 1.5851281638825263 1.6243643726538615 0.9155502768258439 0.28675019195853413 0.4164767863756069 0.44766587702052413 2.0987885154162407 0.2657144004650808 0.1287598656104947 99.50782035729569 -1.997857213454839 -0.7088140958280176 EKTHGEVER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKTHGEVER 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 117.67 0.00066902 59280000.0 124400.0 134000.0 123690.0 129570.0 135730.0 135150.0 142550.0 136160.0 149830.0 124790.0 False True 123730.24422213943 138460.1089952894 141104.47686724694 145973.54871488863 153014.4109652609 125807.39860887961 135654.31190611777 146320.9506064706 112906.40411913925 116825.79536190603 1.0591003796622538 1.1851843898546894 1.2078195267588787 1.2494975811008855 1.3097656257442873 1.0768803090032482 1.1611674586582892 1.2524712556263256 0.9664509774521527 1.0 16.833999333687643 1.2312535793462398 24.99997955736624 0.9832253385544002 1.192352036375373 0.5547125931328785 0.07319938723671665 131.9887759863373 451561.37425434747 0.06578329281496527 0.017761463062644225 17.03152668571337 -1.2312535793462398 0.20912669782097282 EKTPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKTPSPK 7 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 EKT(0.279)PS(0.721)PK 67.334 0.039634 573850000.0 655330.0 429110.0 381310.0 333720.0 341760.0 521190.0 558350.0 530960.0 959470.0 559400.0 True False 651801.7760940078 443392.6669475271 434995.13359406526 375968.91778291774 385281.11022977676 485161.3620492921 531340.4773958672 570582.931360249 723021.4747393089 523698.61307356454 1.2446123778495637 0.8466561794870425 0.8306211296629136 0.7179108525347668 0.7356924395284886 0.9264133032583397 1.0145921034188976 1.0895253818060016 1.3806060522022907 1.0 18.998377258497438 1.9047559398659315 1.8145415262223235 1.1854259791826947 0.8642571673261974 0.36318459521472657 0.16264915145137002 0.35396096292913065 2.1730631693725093 0.10595263813418021 0.04926466473417227 80.30746920890515 -1.9047559398659315 -0.32116881185649726 EKTPS(ph)PKEEDEEPES(ph)PPEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 EKT(0.028)PS(0.972)PKEEDEEPES(1)PPEKK;EKT(0.388)PS(0.612)PKEEDEEPES(1)PPEKK;EKT(0.429)PS(0.571)PKEEDEEPES(1)PPEKK;EKT(0.108)PS(0.892)PKEEDEEPES(1)PPEKK 148.15 1.6328e-07 1691080000.0 1925320.0 820160.0 657210.0 657470.0 618969.0 1332430.0 1332480.0 1256720.0 3174710.0 1046290.0 True False 1914954.2910431633 847458.5298028113 749739.4554282753 740705.6345880829 697791.0332333065 1240322.2503028433 1268022.8518320848 1350502.8278948572 2392345.2594345105 979514.8764260648 1.9550027642563395 0.8651818876859894 0.7654191615382441 0.756196411524325 0.7123843139364273 1.2662617793293562 1.2945416984974165 1.3787466228408989 2.4423776677730613 1.0 19.901707878091624 1.8775361348434079 1.6770642935471052 1.6974043173022497 0.9983049459695743 0.21428015682974344 0.4786183053898924 0.49521322118467204 2.616140785733031 0.32014101218291774 0.14252199360457526 75.42861525236853 -1.8775361348434079 -0.6990993713326754 EKTPSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKTPSPK 7 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 ;; 82.279 0.022728 554460000.0 608154.0 798230.0 482226.0 601380.0 858300.0 988660.0 1086190.0 1076810.0 1468260.0 1186220.0 False True 604879.7664362614 824798.6030097745 550119.2292164691 677514.6463391188 967599.4174573306 920316.2612553071 1033646.8400512539 1157167.030130387 1106426.9966760173 1110514.4240259652 0.544684295268657 0.7427175957063388 0.49537333087679614 0.6100908116824943 0.8713073837883866 0.8287296781962276 0.9307820030864237 1.0420099055852796 0.9963193388023456 1.0 20.082796700917385 2.8426080680244445 1.0395473557772605 1.0113612629663937 0.5897086431767179 0.8338558613329753 0.07702276555400293 0.19369825480824018 0.44636066061254237 0.03908655679111953 0.04044651677474844 695.9981224195288 -2.8426080680244445 -0.42165261978967583 EKTPSPKEEDEEPES(ph)PPEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EKTPSPKEEDEEPESPPEK 19 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 EKTPSPKEEDEEPES(1)PPEK;EKTPSPKEEDEEPES(1)PPEK;EKTPSPKEEDEEPES(1)PPEK 175.71 1.0652e-12 1500010000.0 1628770.0 1019180.0 886620.0 872340.0 917730.0 1598240.0 1661170.0 1458520.0 2857550.0 1520570.0 True False 1620000.8832933572 1053102.7901926797 1011448.3893608098 982778.1545569659 1034597.4756881234 1487757.4306522794 1580812.8608143493 1567362.1686144911 2153345.0917082485 1423525.9207745257 1.138019940242417 0.7397847659982878 0.710523338282798 0.6903830413022943 0.7267851330204157 1.045121419245254 1.110491096610482 1.1010422400750564 1.5126841459526326 1.0 20.441037332465747 2.4824428866972457 2.2405283250232797 1.185846527350251 0.7865732226249189 0.5154447900189362 0.17378762177391457 0.24607304007536357 2.4984048477531777 0.06825485249921794 0.05690249157520554 303.69866769121285 -2.4824428866972457 -0.39927330472533207 EKTPSPKEEDEEPES(ph)PPEKK ddPTM_BT-474_Trastuzumab_2h_R1 10 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK 178.39 4.428e-17 67991622000.0 10400217.0 5593143.0 4708692.0 4853356.0 4744296.0 8970461.0 9592091.0 8378064.0 18407330.0 7849524.0 True False 10344223.387244731 5779307.383628655 5371634.904915439 5467790.371974193 5348453.973954494 8350354.145263831 9128084.912983978 9003277.678626973 13871090.167085066 7348560.658004407 1.4076529906543405 0.7864543347456151 0.7309778274830453 0.7440627663620646 0.7278233415857702 1.1363251300332158 1.2421595653621267 1.2251756633212476 1.8875927970977562 1.0 22.809030270306085 2.300788083287434 1.7429918205863872 1.3802088873658682 0.8613586992787634 0.3675475529435367 0.2823591985780653 0.3708569668659134 2.2761900326894406 0.13844687290230273 0.09219421397875283 199.8886262553851 -2.300788083287434 -0.5188501880871048 EKVAS(ph)DTEEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKVASDTEEADR 12 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 EKVAS(0.979)DT(0.021)EEADR;EKVAS(0.849)DT(0.151)EEADR 174.78 1.7835e-05 1739750000.0 1896450.0 1489210.0 1448130.0 1336010.0 1227040.0 1987310.0 1918190.0 1660590.0 2415360.0 1809650.0 True False 1886239.723915405 1538777.4546035458 1652014.1166283966 1505148.7290158076 1383296.2707641174 1849931.9373245437 1825399.8215026036 1784511.6581051613 1820126.8921658178 1694156.5876806888 1.1133798006816356 0.9082852587493946 0.9751248076129813 0.8884354256039377 0.8165102805861995 1.091948613709381 1.077468183741851 1.053333364271935 1.0743557622720006 1.0 20.692135795723882 2.7057385067493054 24.90693992976897 1.0633807617507534 0.937613973157281 0.3889799175672396 0.07449739028005407 619.2859454249976 469942.2562959078 0.023914909176267665 0.022548547709797306 507.8535665391722 -2.7057385067493054 -0.12576678859347235 EKVASDT(ph)EEADR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKVASDTEEADR 12 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 EKVAS(0.3)DT(0.7)EEADR 166.67 8.2916e-05 482370000.0 552300.0 437160.0 434840.0 382250.0 402750.0 575690.0 501280.0 457770.0 757270.0 496930.0 True False 549326.4781662992 451710.6063311999 496061.6923029647 430642.81080702407 454037.8252137247 535893.9053284931 477031.17132443836 491931.12190895993 570650.9553981217 465215.5019568227 1.180800028923548 0.9709706672094598 1.0663051644160493 0.9256845676801901 0.9759731206374644 1.1519261569624784 1.025398270947369 1.0574263321831798 1.2266378764203019 1.0 18.82753964567531 2.7506854614128495 24.802256162481576 1.0869905109510076 1.0178978389286941 0.12803752995079276 0.08791845385013511 1453.5955175520864 2973435.225435921 0.026226772160636642 0.027618962546730946 563.2295879940416 -2.7506854614128495 -0.0690926720223135 EKVEELIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKVEELIK 8 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 0 100.15 0.0057533 248770000.0 381490.0 420200.0 429200.0 356170.0 325230.0 487500.0 532230.0 501720.0 756670.0 482050.0 False True 379436.10022752365 434186.1029837357 489627.62932672276 401261.0854810675 366646.11271076306 453800.27245156333 506484.0015839565 539160.8940825381 570198.8173585337 451285.1562962313 0.8407901189164203 0.9621103130162084 1.084962849975333 0.8891519693984191 0.8124488643054111 1.0055732304070757 1.1223147815025667 1.194723306451107 1.2635000495878164 1.0 18.783679800538724 2.283088952619292 2.949349270844778 1.1699056036015372 0.9269144563279574 0.5619768667884589 0.09376649596814765 0.1834998456144966 3.280649639476208 0.03776781759292749 0.02856105984632076 191.9061764521162 -2.283088952619292 -0.24299114727357973 EKVELAAECCR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKVELAAECCR 11 1 M0QZR4;Q92888;Q92888-3;M0QYC1;Q92888-2;Q92888-4;M0R2C7 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 0 98.531 0.0029515 0.0 82344.0 88859.0 82090.0 95959.0 95520.0 92610.0 88802.0 86247.0 120330.0 92241.0 False True 81900.66905327838 91816.61809860021 93647.55846092902 108107.39956110198 107683.90580860322 86208.08868049087 84506.3080034169 92683.18909339202 90676.28383939166 86354.10040850677 0.9484282583668757 1.063257189458896 1.0844598926735363 1.2519081207457323 1.2470039673761137 0.9983091511888239 0.9786021463213825 1.0732922774361016 1.050051861005307 1.0 16.397977063366973 EKVESELR ddPTM_BT-474_Trastuzumab_2h_R1 10 EKVESELR 8 1 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 ;;;;;;;;; 142.92 0.00055605 41906685400.0 41550135.0 42616262.0 38648460.0 36503552.0 37523902.0 47103792.0 49285741.0 44861163.0 64164578.0 48855785.0 False True 41326433.68981401 44034718.51859563 44089827.22956355 41124897.94040654 42302348.49810789 43847617.72943949 46901601.4180157 48208930.783429936 48352077.51319518 45737766.973758094 0.903551625367389 0.9627649409263993 0.9639698250869999 0.8991452941723592 0.9248888019036594 0.9586742123767635 1.0254458081638607 1.0540289562253808 1.0571586833466757 1.0 25.44688259588752 2.2718825005254075 2.8316011949715985 1.0428416263728695 0.9331270342631086 0.7959530004253486 0.02477165867656289 0.10978456278819071 1.8116947356210142 0.01011492433205191 0.007523058742847451 187.01760910233065 -2.2718825005254075 -0.10971459210976087 EKVFDVIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKVFDVIIR 9 1 B3KWE1;P12081-4;P12081;B4DDD8;E7ETE2 B3KWE1 HARS Histidine--tRNA ligase, cytoplasmic 0 100.72 0.0040746 398760000.0 520190.0 583570.0 538360.0 554760.0 537900.0 603110.0 606170.0 537470.0 737070.0 591020.0 False True 517389.35483854165 602993.7746744859 614156.4084909945 624992.5591191757 606398.3766169156 561418.4252682303 576847.2413057279 577578.74061736 555428.9747319904 553300.597602321 0.9350963239161543 1.0898122598954454 1.109986888053956 1.129571451445246 1.0959655190048396 1.0146716408785517 1.0425566930624044 1.0438787579848028 1.0038466922661797 1.0 19.07770395642727 2.7350325777220315 24.742747621008697 1.027132959691802 1.0783704404978907 0.1878971704665977 0.05151811753285498 466.39643896536626 3270915.22212906 0.016715271959700736 0.01637674738031513 543.2910838455748 -2.7350325777220315 0.0512374808060887 EKVGEVTYVELFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKVGEVTYVELFK 13 1 A0A0A0MQW0;A0A0A0MR39;Q9P2K5-2;Q9P2K5;A0A087WUT0 A0A0A0MQW0 MYEF2 Myelin expression factor 2 0 148.72 3.9586e-05 171290000.0 398290.0 393920.0 382830.0 374230.0 359480.0 457450.0 443860.0 393270.0 714830.0 515920.0 False True 396145.65089417895 407031.3890703319 436729.136381988 421607.4796293336 405257.6471951081 425827.5582214717 422388.7960901402 422617.8043845965 538669.7247312574 482993.54389866546 0.8201882942296478 0.8427263556875393 0.9042131968406104 0.872905000398492 0.8390539631729182 0.8816423399456713 0.874522654445169 0.8749967980384927 1.1152731367446045 1.0 18.881644379341278 1.2512483311537559 24.97530518734248 1.0576365343157028 0.8654864008135353 0.8347273465632002 0.034497071710848794 65.80853144525057 129543.28914542597 0.021984936575241157 0.007911104194846533 17.833982295048973 -1.2512483311537559 -0.19215013350216748 EKVGEVTYVELLMDAEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKVGEVTYVELLMDAEGK 18 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 211.13 3.0647000000000003e-16 460390000.0 1070860.0 913720.0 855590.0 789660.0 812540.0 1194430.0 1159290.0 1027160.0 1675880.0 1175190.0 False True 1065094.6087437307 944132.6178445971 976049.6350784043 889630.8750343365 916012.1526981008 1111861.8654857867 1103210.7137821338 1103811.8950127964 1262881.829641483 1100188.3680692217 0.9681020447552278 0.858155426148983 0.8871659284957948 0.808616870396109 0.8325957438594433 1.010610453405403 1.0027471165853317 1.0032935514033237 1.1478778237382936 1.0 20.06931912435919 2.6700516222117234 5.455149131888049 1.0298395971394798 0.8678058735329341 0.673999238323475 0.05634909380165442 0.13505263875402285 7.7183834573396695 0.01860181882214727 0.017593181802033127 467.7907417117493 -2.6700516222117234 -0.16203372360654567 EKVLATVTKPVGGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 EKVLATVTKPVGGDK 15 2 Q02878;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q02878 RPL6 60S ribosomal protein L6 0 ; 172.97 5.6042e-07 2412700000.0 3732800.0 3176700.0 2969300.0 2844070.0 2755240.0 3776200.0 3906700.0 3682200.0 5939400.0 3991700.0 False True 3712703.0195530676 3282434.539144298 3387351.630381735 3204128.970390933 3106103.482413067 3515160.182218649 3717717.995956718 3956984.4618327357 4475714.453882507 3736946.288533692 0.9935125455094147 0.8783734861846956 0.9064491081328516 0.8574190590382218 0.8311876175324544 0.9406504431183389 0.9948545440334604 1.058881813199778 1.1976930114343962 1.0 21.833428397205807 1.9904761271377631 1.7684644737381072 1.098961581007181 0.8924140311070814 0.6524738877406451 0.06094714589558098 0.20539544131956616 1.1972391131048599 0.0369433816553177 0.018326860435540677 97.83091763391354 -1.9904761271377631 -0.20654754990009971 EKVPAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EKVPAGR 7 1 A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2;A0A087WW69;F8W8L6 A0A087WTA5 EIF2B4 Translation initiation factor eIF-2B subunit delta 0 112.17 0.0058498000000000005 97333000.0 96590.0 107250.0 106000.0 106000.0 111650.0 106630.0 122510.0 101990.0 137830.0 123500.0 False True 96069.9701721579 110819.75141600601 120923.8786314833 119419.5891315751 125867.96569860305 99258.91908002092 116583.72326635211 109601.01169472626 103863.64332737768 115618.12426633047 0.8309248293187779 0.9584980911879245 1.0458903342258938 1.0328794891749655 1.0886525490472558 0.8585065681516719 1.0083516231226632 0.9479570127107098 0.8983335786362013 1.0 16.819008046493288 0.014857343143335838 8.04425381777584 0.9999999931747154 0.9688008124185008 0.014794781058114714 0.07915707470717856 10309147.8463442 1281554.2087865518 0.07579859546440793 0.01838385972902401 1.0348021994838164 -0.014857343143335838 -0.03119918075621464 EKVS(ph)SIDLEIDSLSSLLDDMTK ddPTM_BT-474_Trastuzumab_2h_R1 6 EKVSSIDLEIDSLSSLLDDMTK 22 1 Q15942;H7C3R3;C9IZ41 Q15942 ZYX Zyxin 1 EKVS(0.499)S(0.499)IDLEIDS(0.002)LSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK 157.96 8.1639e-10 1247446000.0 434289.0 350259.0 311540.0 310334.0 282406.0 389161.0 351431.0 342108.0 528703.0 372677.0 True False 431950.8362780438 361917.1590789631 355402.12404577655 349622.25258073804 318368.7301484971 362259.2160564565 334430.9399332085 367637.8361492244 398411.22990723717 348892.43479516794 1.238063062421055 1.037331632861119 1.0186581553550462 1.0020918131572516 0.9125125637516587 1.038312040985171 0.958550276762379 1.0537283113205413 1.141931409722717 1.0 18.412422789648023 4.748335264215797 3.393765989213532 1.0137777671138388 1.2696781416595941 0.5762937622980091 0.05681997842740417 0.2349248820726689 4.48051770065467 0.014008539549357246 0.15787600192073226 56018.988686070436 -4.748335264215797 0.2559003745457553 EKYDTDFYILDKYPLAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKYDTDFYILDKYPLAVR 18 2 P14868;P14868-2 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ; 151.23 2.7686e-08 635670000.0 523690.0 392660.0 442950.0 338560.0 324650.0 479340.0 500000.0 448070.0 614040.0 522430.0 False True 520870.511227429 405729.450732018 505313.5098095804 381421.6612866615 365992.2531486917 446204.3540449888 475813.0898145134 481507.25865335827 462718.069714452 489088.0701251743 1.0649830634677317 0.8295631717784038 1.0331748833707055 0.7798629420444516 0.7483156419150069 0.9123190306620849 0.972857689398837 0.9845001096226373 0.946083329319455 1.0 18.899734749210335 2.315164978536822 4.529923037031617 0.9757903647746142 0.8845053322597203 0.15053384250993807 0.09430816286820509 0.38924361348836223 14.915608846328444 0.03429884289843968 0.02792066205785199 206.61648955177878 -2.315164978536822 -0.09128503251489395 EKYDTDFYILDKYPLAVRPFYTMPDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKYDTDFYILDKYPLAVRPFYTMPDPR 27 3 P14868;P14868-2 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ; 66.138 0.010917 2755700000.0 3522800.0 3715100.0 3521100.0 3331400.0 3116800.0 4577900.0 4558200.0 4085800.0 6219500.0 4644300.0 False True 3503833.6362198787 3838754.8576746294 4016840.274050155 3753154.898423862 3513706.005279046 4261440.548217453 4337702.451985029 4390703.14327201 4686787.56203022 4347896.797814723 0.805868630088213 0.8828992582353861 0.9238582378654988 0.8632115877980863 0.8081392380437948 0.9801153859859959 0.997655338591565 1.009845299336176 1.0779436081338971 1.0 22.051886266118117 2.578215882957052 4.430847757829307 1.0171873648012115 0.8627571101601278 0.8050682356038973 0.03873776577644206 0.10568214755464789 3.4854819485578576 0.013458110259218326 0.012501449406692674 378.63075108102646 -2.578215882957052 -0.15443025464108373 EKYDYVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EKYDYVGR 8 1 U3KQM0;O15173;O15173-2;U3KPU8 U3KQM0 PGRMC2 Membrane-associated progesterone receptor component 2 0 ; 81.33800000000002 0.021086 909130000.0 458120.0 706560.0 626570.0 529030.0 835700.0 1008410.0 719530.0 675440.0 948880.0 877770.0 False True 455653.53282191657 730077.4224754607 714785.6097559303 596005.1437573322 942121.4414180254 938700.9902418072 684723.5850284734 725844.7626148238 715041.2383405792 821749.9671032947 0.5544916958477232 0.8884422898719622 0.8698334510137937 0.72528770017269 1.1464818729948303 1.1423194740740545 0.8332505171155097 0.8832915018828159 0.870144529316054 1.0 19.64833996798771 5.176919045682559 1.1555459904160905 0.9394864439017148 4.270145827972345e-27 0.4491657141746499 0.12535949187120704 3.996582426763412 2.243571198533715 0.037964257386413805 5.784899223030316 150286.18002203616 -5.176919045682559 -0.9394864439017148 EKYEITEQR ddPTM_BT-474_Trastuzumab_2h_R1 7 EKYEITEQR 9 1 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 ;;;;;; 154.35 6.9238e-05 25839980000.0 24803330.0 24648910.0 22792660.0 21854910.0 22681860.0 26167700.0 26443910.0 25399690.0 32828320.0 26850250.0 False True 24669791.627189014 25469334.06876928 26001668.410647813 24621739.3651656 25570260.425083004 24358788.491140038 25164717.047753796 27295143.844812445 24738220.412950855 25136644.05734443 0.9814274161224393 1.013235259673721 1.0344128815020015 0.9795157742217229 1.0172503682969518 0.9690549158260799 1.0011168153690415 1.0858706429761988 0.9841496882605073 1.0 24.58328871552093 1.9409450260326158 24.99842334857853 1.0355344298721396 0.9999696531289883 0.07130850772633834 0.031329943894055676 385.175783226631 163046.9030727633 0.012449755269208523 0.008036144986350956 87.28608727123067 -1.9409450260326158 -0.03556477674315128 EKYIDQEELNK ddPTM_BT-474_Trastuzumab_2h_R1 7 EKYIDQEELNK 11 1 P08238;P07900;P07900-2;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 ;;;;;; 194.24 5.469699999999999e-07 24825010000.0 32569620.0 25771160.0 24902130.0 22718290.0 21767630.0 31773290.0 32970420.0 31312440.0 49108400.0 34225460.0 False True 32394268.784744937 26628937.48160477 28408133.45080585 25594423.184641223 24539608.653648753 29576877.248579506 31375514.825364467 33649133.274148546 37006292.83884632 32041161.840909492 1.0110204163503398 0.8310852650669331 0.8866137124445636 0.7987982243503665 0.7658776162828492 0.9230900363549353 0.9792252534770715 1.050184554518433 1.1549610161638224 1.0 24.933423126306728 2.0801523333417253 1.856999459956876 1.0759052886985945 0.8562192121508927 0.6158904113616739 0.07168585066102784 0.22233883589672374 1.462498120189393 0.04073572469736864 0.0222468567346905 120.2686215437475 -2.0801523333417253 -0.21968607654770178 EKYQEEFEHFQQELDK ddPTM_BT-474_Trastuzumab_2h_R1 1 EKYQEEFEHFQQELDK 16 1 P49257 P49257 LMAN1 Protein ERGIC-53 0 230.33 1.4202e-15 183240000.0 573640.0 555830.0 575360.0 445420.0 435240.0 686160.0 669960.0 536270.0 1042700.0 634830.0 False True 570551.5859773958 574330.4655436702 656365.6868812295 501810.1263300585 490665.23413040774 638727.3742469008 637551.4753042622 576289.1905238832 785740.556464171 594314.6058946933 0.9600160930227785 0.966374475483505 1.104407800802949 0.8443509907932067 0.825598478085105 1.0747293906488258 1.0727508107334487 0.9696702467144077 1.3220953156305173 1.0 19.180867311540354 2.6519010715946854 16.39693873039192 1.0750773167424452 0.9454113440521554 0.29465106004945973 0.11325704893063267 5.545860129231954 1046.511836984537 0.036967123586108465 0.03485232753182262 448.6431813815351 -2.6519010715946854 -0.1296659726902898 EKYTFEEIQQETDIPER ddPTM_BT-474_Trastuzumab_2h_R1 1 EKYTFEEIQQETDIPER 17 1 Q13618;Q13618-2;Q13618-3;A0A087WTG3 Q13618 CUL3 Cullin-3 0 142.3 5.396800000000001e-07 79781000.0 89915.0 88663.0 78733.0 82803.0 79503.0 115650.0 114040.0 93530.0 133000.0 108190.0 False True 89430.90763049558 91614.09435708463 89817.92204049611 93285.85131001708 89627.23579880012 107655.38771081691 108523.44952489427 100509.68353571657 100223.93210869336 101285.22157388102 0.8829610701425135 0.904515909956894 0.8867821054721171 0.921021348035173 0.8848994394845929 1.0628933425622145 1.0714638111911858 0.9923430286658479 0.9895217737721637 1.0 16.628064161730414 2.7458258359101575 24.99758924508063 1.024262176110151 0.897381049452177 0.8414404345962162 0.027605396814651233 224.37380312107885 772007.7320008134 0.009058515193991548 0.009435482470212734 556.9623468458615 -2.7458258359101575 -0.1268811266579739 ELAAQLNEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAAQLNEEAKR 12 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ; 152.32 0.00011177 1530050000.0 1010110.0 1192710.0 988230.0 1128990.0 1165020.0 1371090.0 1495070.0 1305000.0 1865360.0 1618340.0 False True 1004671.6799937706 1232408.6313415794 1127364.1941508553 1271920.0182420479 1313378.391385458 1276309.7754986957 1422747.7523779692 1402385.7266557296 1405667.0225434015 1515056.1556694182 0.6631250440679953 0.8134408924249064 0.7441072002065405 0.8395200491298344 0.8668842976352582 0.8424174712750275 0.9390726192253493 0.9256328363855887 0.9277986279804369 1.0 20.530939837612728 6.864793223958427 0.18642344070968014 1.0182207208159135 6.252501085971951e-18 0.8779725777741814 0.033093194502944255 10.79564726174291 0.17952941352885562 0.06760548487981125 2.894311076762617 7324757.041879358 -6.864793223958427 -1.0182207208159135 ELAEDGYSGVEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAEDGYSGVEVR 13 0 P23396;P23396-2;E9PPU1;E9PL09;F2Z2S8;H0YCJ7;H0YEU2;H0YF32;E9PQ96;E9PJH4;E9PK82 P23396 RPS3 40S ribosomal protein S3 0 ; 158.56 9.1343e-05 929430000.0 634670.0 481550.0 363490.0 357440.0 351080.0 539190.0 538500.0 502150.0 988070.0 482780.0 False True 631253.0072384661 497578.10064687725 414666.2324882816 402691.86735085136 395787.956985809 501917.0644167343 512450.6977302309 539622.9828660334 744573.3879596747 451968.567071247 1.3966745770153464 1.1009130654177561 0.9174669715978608 0.89097317090056 0.8756979706586945 1.1105132103968054 1.1338193296292876 1.1939391855561692 1.6474008198944117 1.0 18.785862915866428 1.681009705133203 2.499295166997561 1.337593301367234 1.038483417462807 0.2010616041445905 0.2053707539747595 0.34290960380119523 4.748036744161511 0.1348932510742597 0.0563816271008906 47.97441693094987 -1.681009705133203 -0.29910988390442705 ELAEEEPHLVEQFQK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELAEEEPHLVEQFQK 15 0 Q5QNY5;P40855;E9PS71;P40855-5;B7Z8B3 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 0 ;; 173.36 9.7439e-07 438310000.0 987944.0 1106436.0 959209.0 967303.0 965741.0 1067839.0 1024521.0 847795.0 1199130.0 1089022.0 False True 982625.0192748966 1143263.0534053135 1094257.2896059093 1089763.4606201889 1088722.3919546325 994021.8033526255 974961.0051797102 911061.7679157798 903620.4790187783 1019519.6836013589 0.9638117194597604 1.1213741841323186 1.0733066827513782 1.068898892437957 1.0678777560319594 0.9749903011595965 0.9562944402757882 0.8936186152851296 0.8863197970114933 1.0 19.959458198685486 2.4897902414972046 1.9290843448254582 0.9191522891008822 1.0650543109751358 0.6022603749937795 0.04783976273895047 0.19764447675939453 1.4885434344048794 0.01905551551772803 0.015544584482233828 308.88032209946823 -2.4897902414972046 0.1459020218742536 ELAEVAEHVQYMAELIER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAEVAEHVQYMAELIER 18 0 E2QRF9;O75496 E2QRF9 GMNN Geminin 0 ; 101.92 0.00057931 20428900.0 21858.5 27171.9 29750.0 28158.0 24533.0 32153.0 28212.0 25022.0 36385.0 28712.0 False True 21740.81626470765 28076.300265739603 33938.541408364414 31722.79991289521 27657.13213151661 29930.338790020724 26847.27777969412 26889.26869914146 27418.404284021144 26879.575578420092 0.8088228997991312 1.044521710688032 1.2626144824850403 1.1801823217165466 1.0289274118494924 1.113497447260659 0.9987984260156286 1.000360612863588 1.0200460272904623 1.0 14.7142227380626 2.22713745409665 24.75304058749899 1.004136829631195 1.0832702152320814 0.07939964563040025 0.11070632474426709 495.43678423666853 1073561.3078439457 0.04346107251931944 0.032382322921953255 168.7086903487932 -2.22713745409665 0.07913338560088645 ELAILLGMLDPAEKDEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELAILLGMLDPAEKDEK 17 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;; 223.29 2.8173e-15 2792820000.0 7873160.0 5732270.0 5284260.0 4649940.0 4422840.0 7180650.0 7279340.0 7094780.0 12619960.0 6607780.0 False True 7830771.7813503025 5923065.1417196095 6028237.876388694 5238621.927230913 4986062.457773478 6684268.566931927 6927210.514420768 7624228.510162859 9509939.956800206 6186065.823194918 1.2658726895514898 0.9574849849658604 0.9744865393745987 0.8468422543433787 0.806015099140721 1.0805362823442608 1.119808730202465 1.2324842198696768 1.5373163216502288 1.0 22.56059075391392 2.0403931278988394 1.8866942052289768 1.2828649120917528 0.9665436584089153 0.3394454586061664 0.16862318514323948 0.35556024638847655 2.385254682499355 0.09656482111798992 0.051067187832505474 109.74711890189798 -2.0403931278988394 -0.3163212536828375 ELALGQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELALGQDR 8 0 P30046;J3KQ18;B5MC82;P30046-2;A6NHG4 P30046 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein 0 ; 117.76 0.008623700000000002 265180000.0 418940.0 495840.0 457470.0 481410.0 380900.0 425900.0 436100.0 380690.0 549520.0 441930.0 False True 416684.47358860937 512343.7346583903 521877.7995994783 542356.4566399207 429405.3572288218 396458.53546075994 415004.1769362188 409099.02090465015 414098.15919074597 413725.64904469217 1.0071516584740376 1.2383658974042604 1.261410310925884 1.3109084677061764 1.0378988061782841 0.9582643386413131 1.0030902794991774 0.9888171590262168 1.0009003796281761 1.0 18.658314875090664 3.0981640399890122 6.126159847893726 0.9913229061282445 1.2099774608723497 0.6476830645484053 0.07510123210127384 0.1273869776647087 6.723738461962875 0.022010325663109297 0.02642816474332167 1253.614595858955 -3.0981640399890122 0.21865455474410522 ELAPYDENWFYTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELAPYDENWFYTR 13 0 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 ;;; 314.78 2.4111e-50 7634040000.0 710083.0 819208.0 875488.0 880626.0 845007.0 961492.0 828955.0 751300.0 824336.0 794888.0 False True 706259.9920256373 846474.8430583067 998749.100521888 992113.1613073829 952613.6327011158 895026.3211487149 788855.2797343791 807365.821024099 621189.4383364805 744157.5673021447 0.949073184307054 1.137494101050536 1.3421204653508192 1.3332030807724926 1.2801235579108654 1.202737646535702 1.0600648496988088 1.084939341477247 0.8347552529614519 1.0 19.505248603158925 1.777616269837083 1.4635260412506765 0.9352242873206125 1.2184179311749084 0.4525835727238242 0.11868636651001783 0.3692276107356975 1.509353262104583 0.09675725700312325 0.0388051890634014 59.92613521018325 -1.777616269837083 0.2831936438542959 ELAQIAGRPTEDEDEKEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAQIAGRPTEDEDEKEK 18 2 O15355 O15355 PPM1G Protein phosphatase 1G 0 ; 210.17 2.4867e-16 1015680000.0 1267169.0 898205.0 709822.0 717556.0 703122.0 1053051.0 1069916.0 1025376.0 1930040.0 972446.0 False True 1260346.7028997105 928101.2104486122 809758.7677165732 808398.5160273255 792660.4189693969 980256.0629854167 1018160.07560397 1101894.7638738253 1454407.503210997 910383.6637270924 1.384412696664477 1.0194616263751752 0.8894697916716091 0.8879756395427376 0.8706883158736186 1.0767504976663005 1.1183857050286283 1.210363067547467 1.5975764517310007 1.0 19.79611514404158 1.8442942935622915 2.015268415263475 1.3098524942377325 1.0035483804493213 0.2427308910535676 0.19450275079939872 0.39825435390308667 3.0604699680974807 0.12358737505649103 0.0563642616542351 69.87057118163048 -1.8442942935622915 -0.30630411378841127 ELAQPSGGHLPQAS(ph)PISVYLFPGER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAQPSGGHLPQASPISVYLFPGER 25 0 H7C3T2;Q2TAZ0-3;Q2TAZ0 H7C3T2;Q2TAZ0 ATG2A Autophagy-related protein 2 homolog A 1 ELAQPSGGHLPQAS(1)PISVYLFPGER;ELAQPSGGHLPQAS(1)PISVYLFPGER 160.11 1.4525e-11 258960000.0 329330.0 366780.0 338990.0 346650.0 377850.0 372990.0 394610.0 359150.0 454130.0 397470.0 True False 327556.92387200275 378988.0505768077 386716.8454460996 390535.85445717507 425966.9578075879 347206.0792240175 375521.2067434106 385951.59672674706 342215.74653023266 372103.12430881226 0.8802853361697652 1.0185027370592072 1.0392733094204263 1.0495366175239778 1.1447551229214445 0.9330910076849223 1.0091858471786483 1.0372167593154682 0.919679852637368 1.0 18.505342978326745 4.738109543271709 6.63558078656304 1.0215471788872268 0.8777056839306495 0.31932887629264173 0.05944924995980098 0.13211451143658248 37.793980925120785 0.01395257981104292 0.08570970655104312 54715.39556120901 -4.738109543271709 -0.14384149495657728 ELAQQVQQVAAEYCR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAQQVQQVAAEYCR 15 0 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRZ1 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 289.31 1.6753999999999994e-43 110950000.0 84918.0 115528.0 98661.0 89680.0 100266.0 106850.0 96838.0 90046.0 116470.0 100934.0 False True 84460.81092327669 119373.27964184919 112551.61122321492 101033.47880490246 113034.2807768574 99463.71099784519 92153.57598291578 96765.68976432325 87767.52911804158 94492.30570605517 0.8938379722261804 1.263312168645702 1.1911193232318649 1.0692243992774972 1.1962273534575636 1.0526117471115053 0.9752495221101424 1.0240589330663608 0.9288325484517979 1.0 16.527909238283687 2.4844021418291846 4.547152197872251 0.9894792152559764 1.1314811914063867 0.3229498151069583 0.09528923692206728 0.22470552195098475 11.977796268776896 0.03145759356839638 0.0276487657839674 305.0718543148141 -2.4844021418291846 0.14200197615041033 ELASQPDVDGFLVGGASLKPEFVDIINAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELASQPDVDGFLVGGASLKPEFVDIINAK 29 1 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 124.07 2.2165e-05 155380000.0 186060.0 192040.0 142510.0 125570.0 109100.0 195030.0 163080.0 160660.0 249890.0 196010.0 False True 185058.27363320914 198431.9353093687 162574.16928087437 141467.14912501798 122993.23831363732 181548.03515123753 155191.19737390158 172649.2650149497 188307.95785444652 183500.47398739605 1.0084893494385203 1.0813701512454854 0.8859604869033797 0.7709361510136199 0.6702611477836579 0.9893600338258929 0.8457264114999565 0.9408654989458409 1.0261987544913953 1.0 17.485424264035995 1.4309051320542496 3.833722673392978 1.0110972461775773 0.8905396181698955 0.15241668234565553 0.11200977639257274 0.45396283163037854 11.884625523584836 0.08886736668895362 0.03152503879050323 26.971501985078916 -1.4309051320542496 -0.12055762800768188 ELAVEGMHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELAVEGMHR 9 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;Q9P2J5-3 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 93.556 0.0093193 475840000.0 223880.0 322410.0 299960.0 332150.0 332630.0 326350.0 292480.0 276660.0 271890.0 326750.0 False True 222674.65495540627 333141.2219490392 342191.76070094085 374200.1559438935 374988.4588475267 303790.192645267 278331.62501789775 297305.77405101457 204886.35263934304 305896.5352552511 0.7279410823322942 1.0890650385139347 1.1186519664742318 1.2232899455093447 1.225866970132966 0.9931141991908261 0.9098881253612363 0.9719161212562669 0.6697897132714448 1.0 18.222684240704044 2.4122648624446317 3.7287823875011123 0.8960537610675108 1.089941999201952 0.24626630246056214 0.153939463845198 0.33120034550499194 9.351235475564991 0.05679122997621843 0.04730359832679701 258.3835509630092 -2.4122648624446317 0.19388823813444112 ELAVQIYEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELAVQIYEEAR 11 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523;O15523-3 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 136.96 0.00020565 303780000.0 170475.0 223340.0 188086.0 209430.0 246740.0 228160.0 214300.0 182652.0 208289.0 223510.0 False True 169557.181541553 230773.73688811914 214566.87392718103 235943.81652665825 278160.876457441 212387.836230869 203933.4902945006 196282.41972806296 156958.9668796065 209245.4004434618 0.8103269232308282 1.1028855898339056 1.0254317345683166 1.1275938014724025 1.329352405682151 1.0150179443884897 0.9746139693503252 0.9380489096155714 0.7501190781109518 1.0 17.674836384761583 1.9859953803178585 1.9579615617294006 0.8840246661008784 1.0828015265704054 0.25594526048632116 0.13323285359158044 0.448128047537979 3.1949663602313696 0.08007093908668945 0.040782844522707515 96.82675565399397 -1.9859953803178585 0.19877686046952703 ELCHTQSSHASLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELCHTQSSHASLR 13 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 123.1 0.00013149 92255000.0 57955.0 75229.0 77432.0 85791.0 73002.0 78394.0 84488.0 72315.0 83975.0 90329.0 False True 57642.976719405815 77732.95178810917 88333.7525489907 96652.13180365063 82298.371983246 72974.80729962638 80400.99266449719 77711.51250812945 63280.486457349914 84564.12588545233 0.6816481116057064 0.9192190065726401 1.044577137457136 1.1429448456024047 0.9732066774358261 0.8629523043669316 0.9507695115704928 0.9189654796810033 0.748313611649785 1.0 16.36775814710815 -0.2687544542889062 8.662598949326265 0.9999999966189138 0.9276182749814617 0.031113039875300563 0.1263478451009764 0.0 0.0 0.12457647837973031 0.02936295776498663 0.5385742008609942 0.2687544542889062 -0.07238172163745216 ELCQQIHAECK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELCQQIHAECK 11 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 111.52 0.0016486 538790000.0 632600.0 580410.0 608630.0 562740.0 499710.0 700360.0 586690.0 643320.0 876050.0 703600.0 False True 629194.151888467 599728.5959847454 694319.8136932051 633982.826300968 563345.1064867789 651945.7616701056 558309.5633265537 691327.8051127691 660159.2159685772 658695.645617733 0.9552122532985639 0.9104790656727546 1.0540828959664115 0.9624821881225751 0.8552434044990033 0.9897526513306502 0.8475986854337924 1.049540572663773 1.0022219220068953 1.0 19.329252487493207 1.6405569724485431 14.809558126682559 1.0192522870003546 0.9424237822408985 0.268757501328203 0.05872152470108061 0.18229248697364006 73.07141467927312 0.026911243366667142 0.014784089252741406 43.7076012650534 -1.6405569724485431 -0.07682850475945613 ELCQQIHAECKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELCQQIHAECKR 12 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 119.01 0.00036564 92368000.0 156210.0 148060.0 142070.0 139290.0 138550.0 171780.0 174270.0 167060.0 267050.0 206810.0 False True 155368.98271656266 152988.08759583996 162072.22110542306 156924.0997182744 156193.52124981146 159905.25292662453 165839.8943239507 179526.86551349098 201239.10578666604 193611.20874105106 0.802479276519387 0.7901819765014573 0.8371014372529929 0.8105114406271565 0.8067380099812063 0.8259090677983051 0.856561432586046 0.9272545049476064 1.0393980136543493 1.0 17.562802951465805 1.6045157199040256 1.7049175176034832 1.022536379858639 0.8121691775029883 0.9529368405716699 0.018221722506460838 0.06142376018140766 0.35988555167447056 0.014292807516109061 0.005089190586431938 40.2268216403139 -1.6045157199040256 -0.21036720235565076 ELCSER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELCSER 6 0 Q13243;Q13243-3;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ; 103.02 0.08152899999999999 684610000.0 450570.0 555490.0 539950.0 525730.0 469920.0 389480.0 487460.0 424530.0 499300.0 459410.0 False True 448144.18118303287 573979.1488492042 615970.2666704663 592287.3640956893 529761.5265659428 362556.16433730186 463879.6975219653 456210.5843196598 376254.205277223 430090.0604793113 1.0419775353180711 1.3345557165621 1.4321890303254206 1.3771240456838696 1.2317455696966195 0.8429773148750598 1.0785640965638623 1.0607326842458034 0.8748265534383863 1.0 18.714279264954662 2.907387804778623 5.646808838391892 0.9923314642068936 1.3085917437460803 0.634450012004941 0.1184948154371736 0.15250716092380198 7.396500898128169 0.037097478545085064 0.039665871887245546 807.9561755229178 -2.907387804778623 0.3162602795391868 ELDALDANDELTPLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDALDANDELTPLGR 16 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 168.0 1.8711e-09 0.0 94983.0 101920.0 95622.0 86248.0 84999.0 105060.0 109020.0 85900.0 118310.0 114610.0 False True 94471.62208160329 105312.34558805902 109084.74643867645 97166.98795679331 95823.11882145608 97797.44948463833 103746.28610315661 92310.29419136181 89154.08577277839 107295.4916774423 0.8804808161521749 0.9815169672240738 1.0166759547233644 0.9056017772759934 0.8930768415650202 0.9114777140743479 0.9669212049938174 0.8603371189990925 0.830921079524929 1.0 16.71122993290553 3.5930089113192216 13.727640991858863 0.9041501089042907 0.9617468804475474 0.1398390871352655 0.05531549624560287 1.5140882641008973 172.4405836147261 0.014531473804384711 0.022512440724951174 3917.499153695628 -3.5930089113192216 0.05759677154325671 ELDALGHELPVLAPQWEGYDELQTDGNR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELDALGHELPVLAPQWEGYDELQTDGNR 28 0 P55957;P55957-2;B2ZP78;P55957-3 P55957 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 0 ;;; 265.1 5.5711e-54 1087500000.0 472994.0 496794.0 455180.0 504230.0 468030.0 518880.0 503110.0 452445.0 587560.0 533540.0 False True 470447.45285857347 513329.48797168495 519265.3875045154 568065.4663001329 527630.8462688511 483011.04691213707 478772.64723315934 486208.74336915824 442763.71090063034 499489.0204134243 0.9418574455734516 1.027709252841644 1.0395931968128596 1.1372931998183828 1.0563412301478299 0.9670103389106561 0.958524867747607 0.9734122743413378 0.8864333204644964 1.0 18.930093440003656 2.6886105640219182 5.515838209388822 0.9563077397993698 1.0451698676776882 0.39336516228092344 0.05174551794639338 0.22047453023733857 15.855506942711312 0.01750675681860692 0.016663420859552316 488.2143765418707 -2.6886105640219182 0.08886212787831838 ELDDISQEIAQLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDDISQEIAQLQR 14 0 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 0 123.64 0.00023665 27226000.0 24930.0 28604.0 28288.0 25778.0 25175.0 28324.0 27595.0 22530.0 33559.0 28442.0 False True 24795.779649983382 29556.066848516846 32270.70451629624 29041.4921569221 28380.88702608447 26366.02854752424 26260.12442686299 24211.303005021873 25288.834117561215 26626.8072095787 0.9312336794575722 1.110011674170397 1.2119629763454032 1.0906862369317318 1.065876460617282 0.9902061610315545 0.9862288114444379 0.9092829949327205 0.9497509002304954 1.0 14.70059182653358 2.6469776737203365 1.7780946783146114 0.9484081408624323 1.0960877209640536 0.41942578541855413 0.06787349834303456 0.3180340660561108 2.0057516030450313 0.027987676480990178 0.025526971609592226 443.58583941402316 -2.6469776737203365 0.1476795801016213 ELDDLEQWIQER ddPTM_BT-474_Trastuzumab_2h_R1 4 ELDDLEQWIQER 12 0 O15020;O15020-2 O15020 SPTBN2 Spectrin beta chain, non-erythrocytic 2 0 ;;; 226.4 3.5843e-11 146850000.0 172018.0 181590.0 166427.0 172289.0 189102.0 231766.0 206227.0 183053.0 221167.0 195118.0 False True 171091.8742009963 187634.11337652712 189858.4749905838 194100.76973481083 213183.0188046326 215744.56193847992 196251.01214635553 196713.3443842995 166663.35633596557 182665.4021910759 0.9366408315353928 1.0272011619379007 1.0393784083533435 1.0626028104204048 1.1670684007343326 1.1810915441600802 1.0743742919694694 1.0769053253912246 0.9123969527717597 1.0 17.478843880082234 4.735115942851131 1.3248497713138725 1.0778564837518994 0.8787830391636323 0.21272708400035323 0.07275427692248758 1.9693948568245736 3.0386700830918247 0.020928537202410547 0.5294641303780601 54339.53814604048 -4.735115942851131 -0.19907344458826703 ELDDLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDDLKR 7 1 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 0 91.626 0.026081 135840000.0 391330.0 384670.0 375510.0 338600.0 344970.0 432720.0 397800.0 389570.0 527980.0 423200.0 False True 389223.1227608499 397473.50841207453 428378.5440085688 381466.72528256004 388899.8847026163 402807.08491331403 378556.894256427 418641.691596377 397866.4035695334 396191.0136802517 0.9824127991832109 1.0032370616382982 1.0812424543134496 0.9628353801846323 0.9815969349988343 1.0166991956016496 0.9554908647219938 1.0566662976718706 1.0042287427817174 1.0 18.595836632135274 1.7198934696856223 24.999999992359992 1.0245457163370495 0.9998496795717766 0.07102686027547556 0.035975185259380864 2.359932739891514 3148.0075478104714 0.016494928254536582 0.009147239074650954 52.46787433315285 -1.7198934696856223 -0.024696036765272877 ELDEEGS(ph)DPPLPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELDEEGSDPPLPGR 14 0 C9JQV0;Q9BRJ6;H7C0T1;H7C2R9 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR 208.68 8.0844e-09 2353940000.0 3372340.0 3563700.0 3309390.0 3289820.0 2979870.0 3444140.0 3635990.0 3179760.0 3921310.0 3419670.0 True False 3354183.6961422004 3682315.6001978614 3775323.3462664597 3706310.8746871552 3359338.7814267445 3206054.708433493 3460103.272869347 3417049.8376941094 2954955.693361959 3201423.73287322 1.0477162587696196 1.1502118767930323 1.1792638717269004 1.1577070653377108 1.0493265064952206 1.0014465362746958 1.0808014063680245 1.0673531912088903 0.923012990445329 1.0 21.610282210549066 3.150196810395033 5.077383384192066 1.0281511025790535 1.137944378729413 0.5289254394517799 0.05232983846832257 0.17780596435374216 7.708790247277538 0.015623933664734004 0.018970334849935273 1413.1778131150602 -3.150196810395033 0.1097932761503595 ELDEETER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDEETER 8 0 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 0 103.42 0.011112 158030000.0 125030.0 179830.0 159780.0 153370.0 176810.0 162380.0 141080.0 130960.0 107890.0 141380.0 False True 124356.85237213898 185815.5328404693 182275.63516734357 172786.62627461943 199325.70546502477 151155.05280140464 134255.42142206326 140732.90020140534 81301.95515193189 132357.0073584924 0.9395562415166671 1.4038964505837086 1.3771513787225882 1.3054588474233355 1.5059701744777736 1.1420253133405867 1.0143431322712588 1.0632825795178837 0.6142625673888457 1.0 17.014075051693467 2.0354603545191856 1.380028731453786 0.8626907693445692 1.3122815368447294 0.5118457652496806 0.17743369764016634 0.33873838918907706 1.2052041706926193 0.11875914565578082 0.057641590207616285 108.50764916327485 -2.0354603545191856 0.44959076750016014 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGTPR 43 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(1)PR 42.262 0.07543 106340000.0 26030.0 18888.0 15723.0 14795.0 17691.0 26405.0 22641.0 22584.0 38512.0 22056.0 True False 25889.857372204868 19516.675661962894 17936.661733234083 16668.045483034468 19943.843987227818 24579.684500684158 21545.76833298081 24269.332759228313 29021.2336343609 20648.367196908388 1.253845261725163 0.9451922021652667 0.868672159991405 0.8072331010042343 0.9658799553997637 1.1903936164194326 1.0434611186208849 1.1753632879437597 1.4054977498998638 1.0 14.333740082256714 2.7559177884259536 9.826196834852833 1.163779779711681 0.9523080755304552 0.2986606806732133 0.1482464675508941 0.4796923752978901 262.3659905161305 0.04628905564618422 0.048110464383902735 570.056350886605 -2.7559177884259536 -0.21147170418122574 ELDELKPWIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELDELKPWIEK 11 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 ; 113.77 0.0012289000000000002 775810000.0 896140.0 836250.0 778360.0 724950.0 678050.0 998290.0 970300.0 881770.0 1250060.0 956070.0 False True 891315.2818105146 864084.0757262006 887946.3223735987 816728.5956692019 764395.648382783 929280.5620218894 923362.8820940448 947572.1549373345 941999.4629458148 895052.7940672915 0.9958242549695947 0.9654001210360306 0.9920602765101714 0.9124920910618362 0.8540229732251018 1.038241060394952 1.0316295175149466 1.0586773888849448 1.0524512846501362 1.0 19.77161325568827 2.5612230923702892 17.597469367944015 1.0412909714443472 0.9460736290397623 0.5572069812633775 0.040975091460599446 4.597304656503814 960.734273814926 0.013966015673826302 0.013167138614606015 364.1020233612252 -2.5612230923702892 -0.0952173424045849 ELDELLNCLHPQGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELDELLNCLHPQGIR 15 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 0 ; 153.09 2.715e-06 101525000.0 51205.0 84218.0 86485.0 76668.0 73271.0 91972.0 79104.0 90643.0 102251.0 90508.0 False True 50929.317969410295 87021.14521914395 98661.33625890405 86374.16093905289 82601.62753875811 85614.19211880033 75277.43731337454 97407.24093582763 77052.611143203 84731.70195220278 0.6010656790316753 1.02701991361194 1.1643969610637466 1.0193842322177904 0.9748609509266526 1.0104151120096154 0.8884211644401832 1.1495961805508772 0.909371691680033 1.0 16.370614227408755 4.738832886236448 24.999999841736326 1.0237081856565828 0.6010655531202496 0.6874859013452179 0.08376815139477418 12.037602033362337 1104759.0598118766 0.019463874139027955 0.11384112919994901 54806.60320058227 -4.738832886236448 -0.4226426325363333 ELDENVEYEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDENVEYEER 11 0 Q15291;Q15291-2 Q15291 RBBP5 Retinoblastoma-binding protein 5 0 118.28 0.0019451 0.0 45123.0 102860.0 75667.0 164760.0 97317.0 84871.0 98666.0 73102.0 77205.0 69883.0 False True 44880.06278163659 106283.63291981696 86320.25589064571 185618.59910677667 109709.74310694991 79004.06753484442 93893.14863927745 78557.24244443451 58178.862243997566 65423.00711015361 0.68599816431659 1.624560496598173 1.319417429793576 2.8372067764211466 1.6769290797384186 1.207588446703836 1.4351701761612436 1.2007586614318508 0.8892722119305984 1.0 15.997510452684608 1.850551510588148 1.2062918498745763 0.960921064738173 1.6350920087123886 0.1889555914677964 0.5099427760415465 0.7804346913401279 2.103967049685226 0.42062630544296936 0.1761027479108751 70.88453758521595 -1.850551510588148 0.6741709439742156 ELDFWQEGWR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELDFWQEGWR 10 0 Q5JRX3-3;Q5JRX3;Q5JRX3-2 Q5JRX3-3 PITRM1 Presequence protease, mitochondrial 0 ;;; 183.72 3.8091e-06 243452000.0 261197.0 301720.0 313842.0 287737.0 338911.0 463939.0 301021.0 238891.0 337721.0 339925.0 False True 259790.7443737147 311762.56780640816 358028.2256364341 324164.4746976605 382069.30696712254 431867.9889249348 286459.46421810903 256718.25948391852 254494.18477954913 318230.69547556585 0.8163597920228338 0.9796747210086328 1.1250587411167066 1.0186461560951157 1.2006048203368813 1.357090925121314 0.900162895317255 0.8067048940715075 0.7997160185922088 1.0 18.27971347438784 2.0223959403378733 24.99880223452113 0.8488556719465137 1.0863977017238562 0.332676064684321 0.14274078038079005 249.51243019038932 278509.6379421596 0.05602076912285599 0.04137139782763914 105.29213703859217 -2.0223959403378733 0.2375420297773425 ELDGHVLK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELDGHVLK 8 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;A0A0C4DG68;H0YC97;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38;H0YDK8 Q8TB72-3;Q5T1Z4 PUM2;PUM1 Pumilio homolog 2;Pumilio homolog 1 0 ;; 100.15 0.0063088 977500000.0 1601150.0 1737720.0 1602380.0 1486660.0 1438640.0 1754090.0 1748420.0 1626980.0 2454240.0 1857150.0 False True 1592529.5863044872 1795558.9597260759 1827981.1758633615 1674871.0035693161 1621842.276512657 1632833.886983717 1663842.2449869814 1748393.5092370384 1849425.4371311255 1738625.0970138898 0.9159706650040176 1.0327464861803564 1.0513946790500965 0.9633307413115846 0.9328303607823166 0.9391523737855444 0.9569873619359637 1.0056184695826178 1.0637287131696975 1.0 20.729515444470593 1.5218453754737844 4.720319673573277 1.0330571061106704 0.9732076085761874 0.25453684387411957 0.04261873049324101 0.2402036164603997 11.739640702335253 0.027434796496639616 0.011722337349536724 33.25411355560972 -1.5218453754737844 -0.05984949753448299 ELDKAESEIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDKAESEIKK 11 2 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 0 88.087 0.007447 104400000.0 457500.0 331880.0 303900.0 299440.0 286630.0 427260.0 439260.0 397640.0 708540.0 460390.0 False True 455036.8708330289 342926.4251743037 346686.47845384694 337349.0732977251 323130.63151088724 397724.52186185576 418011.3156638459 427313.91597500665 533929.8109495768 431007.5160402909 1.0557515910940443 0.7956390838025356 0.8043629532006548 0.7826988178697781 0.7497099690500079 0.9227786223214637 0.9698469286664828 0.9914303117049612 1.238794663849121 1.0 18.717353502125917 1.9231537214275454 1.4168685713843794 1.101319573453626 0.8346188201844188 0.5131694685609759 0.10099269946490762 0.3213404001180018 1.1999364772692536 0.07182420305592752 0.0320041034633462 83.78257836718049 -1.9231537214275454 -0.2667007532692073 ELDLFLAYYVQEQDSGQS(ph)GSPSHNDPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDLFLAYYVQEQDSGQSGSPSHNDPAK 28 0 A0A1B0GW37;O00712;O00712-4;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWJ4;Q5VW27;O00712-5;Q5VW26;A0A2R8Y7V8;Q5VW30;A0A1B0GWI9 A0A1B0GW37 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 ELDLFLAYYVQEQDS(0.186)GQS(0.523)GS(0.285)PS(0.006)HNDPAK 168.01 3.3732e-12 80728000.0 34854.0 32067.0 29027.0 24755.0 26796.0 37660.0 37115.0 32993.0 42246.0 39018.0 True False 34666.34993664345 33134.33071008914 33113.74929279308 27888.980461812655 30208.311767664716 35056.65284210433 35319.60565693135 35455.10519505935 31835.039367397472 36527.837835009566 0.9490391983567666 0.9070980565494088 0.9065346118311908 0.7634993504894197 0.826994247623165 0.9597242793414069 0.9669229757442637 0.9706324627043194 0.8715281619238259 1.0 15.156708739407936 2.722324865581558 24.34862806072017 0.9546327456869093 0.8687015790442382 0.3534252540557893 0.05618211238376315 687.3097698424198 1030751.2175450271 0.0192732091953155 0.01822523380454087 527.6243930587764 -2.722324865581558 -0.08593116664267109 ELDLFLAYYVQEQDSGQSGS(ph)PSHNDPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDLFLAYYVQEQDSGQSGSPSHNDPAK 28 0 A0A1B0GW37;O00712;O00712-4;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWJ4;Q5VW27;O00712-5;Q5VW26;A0A2R8Y7V8;Q5VW30;A0A1B0GWI9 A0A1B0GW37 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 ELDLFLAYYVQEQDS(0.007)GQS(0.174)GS(0.645)PS(0.174)HNDPAK 160.11 6.4265e-12 90953000.0 46423.0 41014.0 44507.0 40939.0 43752.0 52587.0 52815.0 42160.0 58510.0 46475.0 True False 46173.06372608016 42379.12619651342 50773.19873822102 46121.873202429786 49323.557861578854 48951.78446648274 50260.13667710706 45306.19328414216 44090.99449383198 43508.92571075069 1.0612319879612928 0.9740329255254834 1.166960523819033 1.060055435729443 1.133642282723414 1.1250975211825827 1.1551684132869362 1.0413080199989257 1.0133781465198868 1.0 15.40902377494073 1.5272283059976104 5.6097046092224465 1.0126060932739838 1.0960099638528034 0.32417370923946276 0.05325221718634308 0.17847969115987214 12.060597108361911 0.03132570898095095 0.014006504565075606 33.66885179903158 -1.5272283059976104 0.0834038705788196 ELDLYLAYFVHAADSSQS(ph)ESPSQPSDADIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELDLYLAYFVHAADSSQSESPSQPSDADIK 30 0 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;A0A590UK73;B1AKN7;S4R3K4 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 ELDLYLAYFVHAADS(0.017)S(0.017)QS(0.627)ES(0.332)PS(0.007)QPSDADIK 191.99 1.0643999999999999e-18 40782000.0 26250.0 20193.0 23163.0 19592.0 18690.0 22255.0 23818.0 23869.0 34191.0 22349.0 True False 26108.672916649186 20865.111798073744 26424.149063594785 22072.345191186996 21070.060715690914 20716.564232634955 22665.832346404153 25650.225984326113 25765.08618592735 20922.667686058467 1.2478653921386107 0.9972491133134483 1.2629435911369062 1.0549488966884755 1.0070446575859282 0.9901492746280702 1.0833146464161079 1.2259538969506163 1.2314436463135894 1.0 14.352779189646762 -0.42804057746977475 6.765161537148991 0.999991071228509 1.1195814330811769 0.10795980647369485 0.10522014490312051 0.0 0.0 0.10323626237125638 0.024333020395689672 0.37321528551411914 0.42804057746977475 0.1195903618526678 ELDQDMVT(ph)EDEDDPGSHKR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELDQDMVTEDEDDPGSHKR 19 1 Q9NRL2;Q9NRL2-2;A0A087WWN7 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR 175.42 1.9886e-12 2571650000.0 2175450.0 2051120.0 1969820.0 1669000.0 1808260.0 2607650.0 2097480.0 2206830.0 3613280.0 2289740.0 True False 2163737.618915217 2119390.2892717756 2247153.53401763 1880295.2288735746 2038531.1926032775 2427389.2932478325 1996016.8792482924 2371514.860655679 2722835.5594714247 2143606.83285496 1.009391081308248 0.9887028986789841 1.0483048941511168 0.8771642262258074 0.9509818504768723 1.1323854990772337 0.9311487762846417 1.106319883062315 1.27021220390729 1.0 21.031608889156598 1.580921904708995 5.51515724964418 1.1510336486104535 0.9932070000951496 0.3227642420983444 0.08891122085783562 0.14344415895923746 9.200307530718167 0.047184918864634884 0.021778137082624414 38.099730589681464 -1.580921904708995 -0.15782664851530392 ELDRYS(ph)LDSEDLYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELDRYSLDSEDLYSR 15 1 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;A0A590UJF3 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 ELDRYS(0.991)LDS(0.008)EDLYSR;ELDRYS(0.996)LDS(0.004)EDLYSR;ELDRYS(0.992)LDS(0.008)EDLYSR 296.81 2.5858e-44 1079480000.0 971110.0 921250.0 786830.0 906160.0 763780.0 898470.0 845870.0 705460.0 1022990.0 912340.0 True False 965881.6516604631 951913.2493426161 897608.8247510383 1020879.7630893213 861042.8557212625 836360.8836708844 804952.0365628047 758105.0074532955 770887.8218637019 854113.680106429 1.130858425707579 1.114504159708577 1.050924303939482 1.1952504530335024 1.0081127088538964 0.9792149489593324 0.9424413345803121 0.8875926297759683 0.9025588043123761 1.0 19.704068575677145 2.842546581014603 1.9122063861011653 0.923917060952263 1.1167526882066865 0.7542347244568325 0.0476590094744507 0.15190342851270205 1.1011869214999432 0.016585665871466808 0.017545526189841912 695.899590626237 -2.842546581014603 0.1928356272544235 ELDTVTLEDIKEHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELDTVTLEDIKEHVK 15 1 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;; 286.94 1.5236e-34 2161060000.0 3759830.0 3138270.0 3158840.0 2980730.0 2940170.0 4071030.0 3984190.0 3772040.0 6307930.0 4218550.0 False True 3739587.493036383 3242725.4198257206 3603577.2148705167 3358090.1123788683 3314583.2217470803 3789609.2782738195 3791459.5086161764 4053528.7788310153 4753425.173431509 3949318.527317639 0.9468943735911561 0.8210848016931586 0.912455450211065 0.850296092642512 0.839279789366175 0.959560301875095 0.9600287954467224 1.0263868945471348 1.203606429957934 1.0 21.913172300568707 1.9277726725604176 1.3868614171398441 1.0962292454612534 0.8761201882656369 0.6569130214360591 0.06227645629904946 0.23550571251970204 0.8417073340372584 0.04291959819978602 0.019131540203404677 84.67840568132885 -1.9277726725604176 -0.22010905719561658 ELDYER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELDYER 6 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 ; 130.05 0.037058 837170000.0 1351540.0 1704240.0 1591210.0 1606800.0 1441630.0 1524980.0 1600760.0 1379090.0 1820930.0 1605590.0 False True 1344263.4588102098 1760964.5981651633 1815238.5369547396 1810220.7152510856 1625213.0352895386 1419561.7220167895 1523325.1233029608 1482004.6986771245 1372186.2007119015 1503119.8715852434 0.8943155394469651 1.1715396965033718 1.2076472218016283 1.2043089506507307 1.0812264983068391 0.9444101890022047 1.0134422091675286 0.9859524357921966 0.9128920631358199 1.0 20.51952863596076 2.898286170717674 4.491452112044566 0.9759994730270648 1.1309565960956098 0.3940606255195045 0.08731679270648428 0.22954764389874635 7.704204815101878 0.027302459372941647 0.02936743094602222 791.199803479244 -2.898286170717674 0.15495712306854503 ELEAELEDER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEAELEDER 10 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 125.97 0.00091895 149020000.0 206040.0 243200.0 224850.0 219940.0 235130.0 254020.0 243490.0 240320.0 329840.0 260490.0 False True 204930.70353319624 251294.7649824952 256506.92556876419 247784.38144904346 265072.4117753026 236460.19529876127 231711.4584778719 258253.89872023332 248555.35162955942 243865.3051832911 0.840343825781895 1.0304654234993373 1.0518385359326599 1.0160706594273703 1.0869623769403036 0.9696344263528424 0.9501616406799472 1.0590022165150867 1.0192321184956723 1.0 17.895724994356698 4.740193254529301 24.86730188700777 1.0219810670767333 0.8403437609697114 0.660515426090039 0.0387045830910344 80.13823597959552 1220502.1437237149 0.009343117629842624 0.059266887498951724 54978.54657182747 -4.740193254529301 -0.1816373061070219 ELEAENYHDIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEAENYHDIKR 12 1 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ; 123.75 0.00021765 299515000.0 390260.0 369670.0 335660.0 265550.0 301170.0 358190.0 360570.0 307050.0 455730.0 365740.0 False True 388158.88352196186 381974.2424797661 382918.0103909788 299168.6027725453 339522.2143255552 333429.16838856484 343127.8515888381 329963.6301683072 343421.4479691345 342398.1600742322 1.1336476908573594 1.1155849739290473 1.1183413202569834 0.8737447733588443 0.9916005805987582 0.9738053741768855 1.0021311198472787 0.9636840048929318 1.0029885905189457 1.0 18.385315423667365 3.7946870446670293 13.225016509680188 0.9731470065405164 1.1218909150088687 0.7847348275808789 0.035990980599977886 0.8789795733389791 206.4687197756098 0.008810537842688095 0.015884951180523462 6232.855301456943 -3.7946870446670293 0.14874390846835228 ELEAIFGRPVVDGEEGEPHSIS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 ELEAIFGRPVVDGEEGEPHSISPR 24 1 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 ELEAIFGRPVVDGEEGEPHS(0.306)IS(0.694)PR;ELEAIFGRPVVDGEEGEPHS(0.008)IS(0.992)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHS(0.008)IS(0.992)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHS(0.002)IS(0.998)PR 241.77 8.098799999999997e-38 7820560000.0 3135220.0 3921680.0 3538760.0 3679180.0 3572750.0 3866560.0 3458000.0 2958910.0 3504350.0 3279770.0 True False 3118340.323875685 4052210.7480943776 4036986.64854668 4144963.810765174 4027718.5351516665 3599273.808103211 3290723.3291571783 3179718.889240537 2640749.8983842074 3070452.2706476357 1.0155964167513174 1.3197439305056073 1.3147856708729029 1.3499522042369663 1.3117671861097255 1.1722291997537007 1.0717389619162137 1.0355864898593112 0.8600524175636206 1.0 21.55001974627568 2.0849417432516617 1.4243177007709047 0.9509550039928794 1.2722600929788737 0.6421107058389842 0.09761089978908631 0.25905444254684035 0.991499069406838 0.06395493297387564 0.03258636079892163 121.60228710351993 -2.0849417432516617 0.3213050889859943 ELEAIFGRPVVDGEEGEPHSISPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEAIFGRPVVDGEEGEPHSISPR 24 1 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 0 ; 293.61 4.201099999999998e-62 834890000.0 489080.0 585590.0 534600.0 603200.0 529470.0 614080.0 646100.0 497030.0 647050.0 594630.0 False True 486446.84762189677 605081.0091533698 609867.0331734996 679565.0581525114 596894.8660854405 571630.0949888325 614845.674658315 534120.9024672009 487593.1975257905 556680.204311645 0.8738353615850337 1.0869454391710842 1.0955428780292664 1.2207458660988635 1.0722401505609893 1.026855437936173 1.104486327870404 0.959475293589181 0.8758946227102092 1.0 19.086489255953474 1.6333181541691753 4.812334861688243 0.9322220022495736 1.0745497697924642 0.302663264891724 0.08567025254341473 0.17675608983911711 9.079878853337934 0.04792024933155114 0.022435946240867977 42.98512105796996 -1.6333181541691753 0.14232776754289056 ELEATFGCR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEATFGCR 9 0 A0A0G2JM25;A0A0G2JNK1;K7ERG0;A0A0G2JMB6;A0A0G2JPH3;A0A0G2JNK3;Q8WX94;Q8WX94-2;Q8WX94-3;Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8 A0A0G2JM25;Q9NX02 NLRP7;NLRP2 NACHT, LRR and PYD domains-containing protein 7;NACHT, LRR and PYD domains-containing protein 2 0 101.25 0.009946 0.0 24177.0 35588.0 22595.0 30234.0 29711.0 30902.0 35895.0 13897.0 32145.0 28458.0 False True 24046.83371831721 36772.525066599694 25776.1796007393 34061.62130003815 33494.51973910611 28765.817475483473 34158.62171778392 14934.064707536128 24223.29547093195 26641.78607588041 0.9025984087488608 1.3802575008246516 0.9675094427725035 1.2785036710010644 1.2572175019988499 1.079725563201861 1.282144583718759 0.5605504325048378 0.9092219043400401 1.0 14.701403184047205 1.7495077906562797 24.999999999999993 0.7891103871070622 1.169503791979201 0.43812395277873395 0.17547678063538774 2.191262370678789 5013.487407576541 0.07372712138395555 0.04088552561860005 56.17043544825281 -1.7495077906562797 0.3803934048721389 ELEAVLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEAVLSR 8 0 Q96DP5 Q96DP5 MTFMT Methionyl-tRNA formyltransferase, mitochondrial 0 68.214 0.071671 0.0 253920.0 636770.0 605090.0 752890.0 686500.0 446930.0 430310.0 309460.0 153680.0 404120.0 False True 252552.92293316405 657964.5045144063 690281.4124634367 848205.7968044501 773921.7057957103 416034.78106005583 409494.2613561667 332553.4766060396 115807.62320649621 378328.71561546164 0.6675489131780898 1.7391344546607723 1.8245546372035053 2.2419810122649473 2.045633000753595 1.0996648255558776 1.0823768972704206 0.8790067020554988 0.3061031807170689 1.0 18.529280757310406 2.473159641093284 2.6355001405225362 0.8135505900975535 1.7379772364029653 0.4783802088005247 0.4364907336013867 0.2496171816871959 3.522252420079478 0.17092693263482683 0.14464363187644763 297.2758578929678 -2.473159641093284 0.9244266463054118 ELEDATETADAMNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEDATETADAMNR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 282.61 4.9913e-33 1181270000.0 555790.0 655040.0 549300.0 541450.0 562230.0 655850.0 680820.0 526410.0 675420.0 663710.0 False True 552797.6883940734 676842.6104199587 626636.6653988096 609997.5144838807 633826.6579017069 610512.633204836 647886.1356150348 565693.3872558174 508971.7911643139 621351.4595692806 0.8896698959672058 1.08930718677179 1.0085059844120954 0.9817270163117177 1.0200775231799954 0.9825560458617768 1.0427047778469016 0.9104241706424167 0.8191367113181515 1.0 19.24505001590627 1.6333761513850045 5.842085314211812 0.8955765938638308 1.0045636033612955 0.30301717548580576 0.06318104417121484 0.135962628655765 9.824276570691849 0.030978809285681815 0.014983839080331405 42.99086182585421 -1.6333761513850045 0.10898700949746465 ELEDLEAMIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEDLEAMIK 10 0 O75400-3;H0YG38 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 142.92 8.1165e-05 18356000.0 62260.0 58400.0 53381.0 51186.0 50186.0 64210.0 57176.0 56685.0 77604.0 65860.0 False True 61924.7990777363 60343.80869645447 60896.58080403032 57666.14235178121 56576.88962427312 59771.313834081746 54410.17844646923 60915.12254059767 58479.53404032366 61656.758414417265 1.004347303851387 0.9787055020126425 0.9876708145232431 0.9352769077509121 0.9176105114706077 0.9694203096493856 0.8824690081946709 0.987971539651261 0.948469162897953 1.0 15.911971421729234 3.750229066289391 22.33245066144783 0.9463198278592263 0.9890876619914112 0.25340736196843827 0.032435212014028575 233.0100077452572 445955.6456679137 0.00794574536028773 0.01413353966379072 5626.380073335797 -3.750229066289391 0.04276783413218488 ELEDS(ph)PQENVSVTEIIKPCDDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEDSPQENVSVTEIIKPCDDPK 23 1 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 1 ELEDS(0.999)PQENVS(0.001)VTEIIKPCDDPK;ELEDS(0.998)PQENVS(0.002)VTEIIKPCDDPK 152.49 3.7156e-08 219450000.0 311930.0 215292.0 180322.0 178047.0 171021.0 289930.0 257590.0 258650.0 433080.0 259330.0 True False 310250.603538681 222457.864073238 205709.77021307865 200587.73194442972 192799.5106291158 269887.82152180874 245129.3876106412 277951.7763980871 326353.2369746835 242779.3373764167 1.2779118968335168 0.9162965286799868 0.8473116882024289 0.8262141832664651 0.7941347592121903 1.111658942801058 1.0096797785990366 1.144874104204088 1.3442381073340266 1.0 17.88928611541641 2.11325635064119 1.5451015404760007 1.1742671370289899 0.9297568237100582 0.25303053285686106 0.15575430086194494 0.5070366239207571 2.3089509317352475 0.09628961016517716 0.051342737332980296 129.7945181933644 -2.11325635064119 -0.2445103133189317 ELEEEAEEEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEEEAEEEQR 11 0 Q9H2J4 Q9H2J4 PDCL3 Phosducin-like protein 3 0 198.61 1.2345e-07 249500000.0 184420.0 222880.0 217870.0 169480.0 172060.0 204000.0 185590.0 183350.0 206500.0 214740.0 False True 183427.1032109881 230298.42606619513 248544.202240012 190936.15062282424 193970.82112048054 189897.96016434632 176612.30267735125 197032.50803243523 155610.8419582346 201035.10935183655 0.9124132784685274 1.14556321434951 1.2363223669803298 0.9497651989168824 0.9648604253548935 0.9446009743104185 0.8785147193779852 0.9800900383405355 0.7740480877193257 1.0 17.617087954271426 3.578313788338562 8.108971375270865 0.9271690522763926 1.1026210028440382 0.4022474176038423 0.09568678787670105 0.28535155202734025 20.590810228152606 0.02477044640212131 0.03840900676383929 3787.161175050544 -3.578313788338562 0.17545195056764562 ELEEEEENS(ph)DEDELDSHTMVK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELEEEEENSDEDELDSHTMVK 21 0 A0A087WZ06;Q13188;Q13188-2;E5RFQ9 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK 325.32 7.3492999999999966e-68 4779280000.0 1916960.0 1668620.0 1497490.0 1576290.0 1662990.0 2063280.0 1899680.0 1809220.0 2408280.0 2190040.0 True False 1906639.3003542763 1724159.0079979107 1708323.575583584 1775848.1523793438 1874761.919186028 1920650.3100386877 1807785.220917671 1944233.183433007 1814791.6632986777 2050269.7722124234 0.9299455740874738 0.8409425097934258 0.8332189250101224 0.8661534089063049 0.9143976780982306 0.9367793136637503 0.8817304168548074 0.9482816406813658 0.8851477439187703 1.0 20.967382319750858 3.2034690830418624 4.1924956903436295 0.9248957678327573 0.8626792806241055 0.3560623436465271 0.039558284373920935 0.22433759545587884 8.590365903454487 0.010936695546871947 0.013779606186869476 1597.603793310623 -3.2034690830418624 -0.062216487208651805 ELEEEFYSLVR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELEEEFYSLVR 11 0 Q92613 Q92613 JADE3 Protein Jade-3 0 ;; 119.68 0.0012879 28742100.0 38407.0 46489.0 39162.4 40453.0 44618.0 49235.0 44494.9 41339.5 46923.0 46829.0 False True 38200.22097941885 48036.35826180605 44676.125514317035 45574.345652260476 50299.837828394695 45831.500336723526 42342.51169997562 44424.46340772756 35359.45538598661 43840.33312767603 0.8713487844211516 1.095711524862504 1.0190644624940903 1.0395529048452823 1.147341597106634 1.0454186149372686 0.9658346248570168 1.0133240383541424 0.8065507915509995 1.0 15.41997114043503 1.3883251124941463 7.153992738344352 0.9024066040020197 1.0300708780581445 0.2611004442687844 0.08162862933593228 0.2728622203167814 17.856773788304405 0.05268935454160814 0.019317390324863116 24.452603876293935 -1.3883251124941463 0.1276642740561248 ELEEKNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEEKNR 7 1 P32780 P32780 GTF2H1 General transcription factor IIH subunit 1 0 94.887 0.01265 327730000.0 362000.0 333950.0 270360.0 311090.0 315480.0 341050.0 363900.0 295820.0 506410.0 384180.0 False True 360051.03222198103 345065.3238729622 308424.33798875305 350473.96210322384 355654.5080035403 317474.0162453444 346296.7667670028 317895.5905435228 381612.04104634206 359661.30348695396 1.001083599295361 0.9594174311429053 0.8575410671054874 0.9744555744678177 0.9888595313297055 0.882702734954805 0.9628413271308852 0.883874877451346 1.061031691056484 1.0 18.456279420480485 1.2302739013468469 24.999988896744103 1.030515868878226 0.9364180947411693 0.3647288305745252 0.04830724968883354 204.2242485115002 616095.1083838452 0.04218452609067277 0.01124845840311539 16.993150405520137 -1.2302739013468469 -0.09409777413705678 ELEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEELR 6 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;Q14980-5;F5H4J1;F5H6Y5;P06727;Q9BT92;F5GWH6;A0A499FI31;Q15020-4;Q15020;P61129;O94964-2 Q14980;A0A499FI31;P61129;O94964-2 NUMA1;APOA4;TCHP;SART3;ZC3H6;SOGA1 Nuclear mitotic apparatus protein 1;Apolipoprotein A-IV;Trichoplein keratin filament-binding protein;Squamous cell carcinoma antigen recognized by T-cells 3;Zinc finger CCCH domain-containing protein 6;Protein SOGA1;N-terminal form;C-terminal 80 kDa form 0 ; 122.98 0.044171 811260000.0 2269160.0 2270280.0 2072890.0 1998380.0 1925590.0 2839030.0 2422950.0 1820070.0 2563880.0 2092930.0 False True 2256943.094687377 2345844.8973867567 2364734.894117128 2251374.703101481 2170802.472633881 2642774.5384577685 2305742.651932149 1955892.8655281945 1932046.1282318572 1959357.4155524785 1.1518792216125553 1.1972521596960912 1.2068930738960384 1.149037273766952 1.107915511178843 1.3487965582392671 1.176785120279855 0.9982317927312373 0.9860610998770123 1.0 20.90194915968717 1.7388058339904204 4.6336828016646905 0.9924242272359253 1.1941832144184557 0.6956412401342501 0.05961134416493486 0.09976222118091482 4.935402453015531 0.0315420981047014 0.016008997140298045 54.80318939819814 -1.7388058339904204 0.20175898718253038 ELEEMIENLEPHIDDPDVK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELEEMIENLEPHIDDPDVK 19 0 Q8TF05-2;Q8TF05 Q8TF05-2 PPP4R1 Serine/threonine-protein phosphatase 4 regulatory subunit 1 0 ;;; 155.11 2.9160000000000004e-08 71333000.0 138347.0 123050.0 114272.0 104721.0 113605.0 146038.0 142942.0 132313.0 202577.0 146590.0 False True 137602.15512379684 127145.64486470433 130360.5043299705 117978.66786271388 128071.92336041032 135942.73679647455 136027.3493685323 142186.86793180028 152654.61274272783 137234.50069798704 1.0026790233063834 0.9264845517565198 0.9499105812820043 0.8596866477646928 0.9332341554712916 0.9905871781881199 0.9912037328564242 1.0360868965793955 1.1123632320321253 1.0 17.06628369449556 2.14306034736061 1.4131389722847962 1.0547668729121202 0.9325091776082526 0.5612970395628486 0.04305193431058487 0.3001652474121548 1.1453785412021715 0.0272642153595742 0.014614107771202636 139.01457854075687 -2.14306034736061 -0.12225769530386765 ELEENKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEENKR 7 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 91.906 0.025751 307530000.0 323760.0 300580.0 269640.0 273850.0 302420.0 314170.0 386560.0 307540.0 511290.0 337070.0 False True 322016.9121331176 310584.6235955531 307602.96824710537 308519.38192152715 340931.3944162253 292452.16737663065 367860.6159973969 330490.1964564771 385289.43043499155 315557.9040198542 1.02046853534956 0.9842397215821658 0.9747908841090276 0.9776949903372276 1.080408350014819 0.9267781400849658 1.165746797374633 1.0473202928730423 1.2209785447514887 1.0 18.267545234564885 2.2351910356065168 24.99999383668842 1.1073793566617163 0.9959216283229699 0.41168957177682963 0.0669966763237478 84.08444978826272 623839.2316723623 0.022631043232771125 0.01740556221629186 171.86642196042828 -2.2351910356065168 -0.11145772833874634 ELEEQLENETLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEEQLENETLHK 13 0 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-2 A0MZ66 KIAA1598 Shootin-1 0 179.39 1.3788e-05 126090000.0 211960.0 198710.0 179450.0 148320.0 166380.0 233380.0 192540.0 202610.0 266930.0 238830.0 False True 210818.83091096985 205323.9422272686 204715.0001926387 167097.29679240793 187567.50678847815 217246.98991742748 183226.10462577266 217729.78703273364 201148.6781787484 223587.66492734972 0.9428911517970866 0.9183151597114467 0.9155916551083294 0.7473457752989316 0.8388991711569795 0.97164121280133 0.819482169042323 0.9738005319009013 0.8996412134099956 1.0 17.770481072997978 1.1149900508543455 0.8332274095372892 0.9946456522237144 0.878312062693682 0.20803766423756997 0.06685731973680593 0.9307382585958043 1.4537917789456516 0.06416917708677713 0.023591975803658023 13.031369248664914 -1.1149900508543455 -0.11633358953003237 ELEESHDQHAVLVLQPAVEAFFLVHATER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEESHDQHAVLVLQPAVEAFFLVHATER 29 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 63.323 0.0058501 16380000.0 9666.5 13456.0 10898.0 12531.0 11573.0 13718.0 11946.0 5660.2 13313.0 11595.0 False True 9614.456638049118 13903.874825676225 12432.343672885907 14117.423315167627 13046.752951454848 12769.70694869854 11368.12634184835 6082.592865913219 10032.189535060423 10854.997173021067 0.8857171019762972 1.2808731871651533 1.1453106320271704 1.3005460149040822 1.201912146405819 1.176389707446104 1.0472712392871562 0.5603495578083476 0.924200105735113 1.0 13.406071729779889 1.9560874787113909 6.927535525568586 0.7833652446820785 1.1724654430695929 0.49113703475062176 0.1511957759898173 0.15863755422587747 20.307279036289163 0.061264393388254096 0.038610425299539626 90.38315116176871 -1.9560874787113909 0.3891001983875144 ELEEWYAR ddPTM_BT-474_Trastuzumab_2h_R1 5 ELEEWYAR 8 0 P09496-2;F8WF69;P09496-4;P09496-3;P09496;P09496-5;C9J8P9 P09496-2 CLTA Clathrin light chain A 0 ;;;; 191.44 0.00042141 9450960000.0 5217760.0 6139990.0 5538340.0 5766690.0 5629310.0 5806160.0 5816380.0 5372410.0 6308810.0 5578280.0 False True 5189668.159907637 6344355.855447664 6318090.131885748 6496752.362727954 6346169.26096554 5404793.825430494 5535019.478670675 5773326.514745204 4754088.309222906 5222269.394594215 0.9937572667698215 1.2148656792801549 1.2098361180727026 1.244047725583251 1.2152129240086158 1.0349511710416965 1.0598877730053913 1.1055206230305565 0.9103491126183682 1.0 22.316245451375625 2.731473225121097 24.457933489835675 1.0380977266808373 1.1834393713674551 0.46771743048834846 0.08071451865962602 394.74544292262107 1362227.2944545571 0.025956329332188187 0.024964709816801788 538.8566230640316 -2.731473225121097 0.1453416446866178 ELEEYRR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEEYRR 7 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;H0YG19 P35611 ADD1 Alpha-adducin 0 98.997 0.017401 192120000.0 107110.0 148220.0 124770.0 145080.0 144380.0 132740.0 127390.0 125130.0 135260.0 130130.0 False True 106533.3316610396 153153.41309911793 142336.5314797187 163447.1131246124 162765.93719269434 123563.9962363496 121227.65902294163 134467.83599726518 101926.98539114189 121824.99199010196 0.874478462265733 1.2571592297872782 1.1683688966815877 1.341655028697988 1.3360635985588143 1.014274609978131 0.9950967945295752 1.1037787386695697 0.8366672858014491 1.0 16.89445060211097 2.65148742551611 8.942518318548505 1.005012193225187 1.2054346747155038 0.35695816075429065 0.1369213621344587 0.44722738241356624 42.880821039706106 0.04438814921835742 0.04182739020731691 448.21607224164427 -2.65148742551611 0.20042248149031683 ELEFYLR ddPTM_BT-474_Trastuzumab_2h_R1 10 ELEFYLR 7 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ;;;;;;;;; 202.71 0.00070408 7413880000.0 3301811.0 3835484.0 3841930.0 3580952.0 3137204.0 3279319.0 3496420.0 3105723.0 4546574.0 3543335.0 False True 3284034.4164416846 3963145.7663409594 4382840.349345799 4034300.156036717 3536708.3337350646 3052627.3962165867 3327284.8069785186 3337487.820801844 3426131.7586703026 3317196.326698288 0.9900030305744338 1.1947275277148295 1.3212484030778426 1.2161776870325265 1.0661739569859177 0.9202432101011534 1.0030412671686129 1.0061170615499122 1.0328396094904764 1.0 21.661532969201737 3.077556312283672 4.283271400514793 0.9944132882396169 1.190537298778724 0.5429796981663602 0.08097775703832531 0.1642617961394118 5.770179472238403 0.02493629568134358 0.029961967000004752 1195.5185311297296 -3.077556312283672 0.196124010539107 ELEGILLPSDRDR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELEGILLPSDRDR 13 1 Q13438-4;Q13438;Q13438-8;Q13438-6;Q13438-5;Q13438-3;Q13438-2;Q13438-7;B4E321 Q13438-4 OS9 Protein OS-9 0 ;; 147.96 3.9248e-05 480850000.0 516203.0 755660.0 688094.0 697903.0 682505.0 733843.0 747659.0 661376.0 788550.0 682230.0 False True 513423.820403545 780811.6862938834 784971.6541797348 786257.4482423931 769417.966225929 683114.1606906092 711491.8778352583 710731.2355192783 594222.4185286475 638689.4973135107 0.8038707737689992 1.2225215688972098 1.229034855718661 1.2310480312414567 1.204682352633471 1.0695559635221181 1.1139871264956958 1.1127961842316076 0.9303776264179966 1.0 19.284755201293414 1.320089702271202 4.898705047653892 0.965903917467521 1.1352392991629152 0.20933543932193066 0.12155291959604221 0.28575975026992617 11.031742850631478 0.08807738954874911 0.030033189987579464 20.897277135065185 -1.320089702271202 0.1693353816953942 ELEHALEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEHALEK 8 0 F5H345;A0A3B3IRR1;A0A3F2YNY7;P08397-2;P08397;A0A3B3IU56;F5GY90;A0A1W2PNU5;F5H226;A0A3B3IU34;F5H0P4;P08397-4;P08397-3 F5H345 HMBS Porphobilinogen deaminase 0 81.594 0.022455000000000003 96727000.0 211170.0 257740.0 230170.0 224120.0 223210.0 259880.0 217190.0 193440.0 273030.0 247880.0 False True 210033.08418319287 266318.72009287955 262575.93532649556 252493.5690204585 251634.4704306776 241915.10729171743 206683.68995362843 207875.47506841706 205745.4149145607 232060.0861792548 0.9050806092563148 1.147628290921006 1.131499775121469 1.0880525521541857 1.0843504997938447 1.042467540518149 0.8906473032763403 0.8957829779820199 0.8866040614827345 1.0 17.824138878105494 2.326170060447175 4.254951457249182 0.907199259575106 1.078350276802145 0.5245836443003923 0.06892476982446329 0.1506767307622748 5.045045557137546 0.024220170382165288 0.019693422118238046 211.91908026726932 -2.326170060447175 0.17115101722703885 ELEIEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEIEER 7 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 118.05 0.011849 1239500000.0 1405010.0 2194900.0 1987570.0 2123900.0 1898600.0 1863930.0 1886120.0 1590480.0 1665310.0 1874040.0 False True 1397445.5822712865 2267955.9196549314 2267402.5797318597 2392785.5222316277 2140375.4561161464 1735080.906319267 1794881.169921901 1709169.6938937944 1254916.6645107393 1754437.1627536365 0.7965207372134993 1.2926971497202633 1.2923817551681989 1.3638479468116638 1.2199784076374496 0.9889672557984411 1.0230524113527022 0.9741982957150808 0.7152816248722831 1.0 20.742576846156787 2.640694506369475 3.0841601312922435 0.9389099318132961 1.214633521247343 0.3694686208440463 0.164897578305119 0.2850692584630785 5.226181943912858 0.05740293599690604 0.05404538511909594 437.2144493556715 -2.640694506369475 0.27572358943404685 ELEKPIQSKPQS(ph)PVIQAAAVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 ELEKPIQSKPQS(1)PVIQAAAVS(1)PK;ELEKPIQS(0.019)KPQS(0.981)PVIQAAAVS(1)PK;ELEKPIQS(0.001)KPQS(0.999)PVIQAAAVS(1)PK;ELEKPIQS(0.024)KPQS(0.976)PVIQAAAVS(1)PK 235.07 2.3519e-37 3260030000.0 3301150.0 2007320.0 2047960.0 1784400.0 1803070.0 3176950.0 2761800.0 2780120.0 4897420.0 2818400.0 True False 3283376.9751922474 2074132.4327494383 2336294.966812569 2010304.857041345 2032680.2768668183 2957334.9242358846 2628201.1828994467 2987586.6715633157 3690516.463065844 2638527.29904636 1.2443975760186203 0.7860947406149975 0.8854541575738003 0.76190413408568 0.7703844025420876 1.1208278668576788 0.9960864092061334 1.1322932579257814 1.3987031570223676 1.0 21.33130147951621 2.1780836806227786 1.4103583694250539 1.1851911182178683 0.8859347676680867 0.31508100011234164 0.16923836571059012 0.47029909863334474 1.8028833323711368 0.10256810928310617 0.05678367417278738 150.6897389848859 -2.1780836806227786 -0.2992563505497816 ELEKPIQSKPQSPVIQAAAVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 ELEKPIQSKPQSPVIQAAAVS(1)PK;ELEKPIQSKPQSPVIQAAAVS(1)PK;ELEKPIQSKPQSPVIQAAAVS(1)PK;ELEKPIQSKPQSPVIQAAAVS(1)PK 221.3 1.4144e-32 10742540000.0 8655060.0 5637290.0 5196220.0 4938620.0 4402290.0 7546580.0 8078950.0 6840530.0 11759360.0 7311620.0 True False 8608462.118627558 5824923.7898362335 5927802.6096461015 5563848.7856318895 4962895.537082878 7024902.687338502 7688140.323913929 7351005.084107516 8861423.295351015 6844986.151807177 1.2576303191431288 0.8509767091783478 0.8660065160367161 0.8128356525838919 0.7250409901519816 1.0262844265190842 1.1231783605411894 1.0739254866376526 1.2945860077469213 1.0 22.706616192072605 2.4964638423969077 6.513908720051272 1.117956407364118 0.8905572933603794 0.331154402856471 0.14747841097525474 0.1897358982185145 33.441416804634684 0.049144281888356636 0.04426651479082725 313.6633975821028 -2.4964638423969077 -0.22739911400373858 ELELAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELELAHR 7 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 0 ; 98.418 0.011277 177470000.0 647010.0 782040.0 654310.0 687880.0 679600.0 726750.0 644310.0 649510.0 852080.0 811120.0 False True 643526.570049569 808069.7286468378 746431.160635527 774965.5374700746 766143.0316952148 676511.4830854844 613142.2637967789 697979.7343449515 642096.3012870331 759353.6271652307 0.8474662489622132 1.0641546964929514 0.9829822811567451 1.0205594728810676 1.0089410312759417 0.8909043940581318 0.8074528676260116 0.9191761379353698 0.8455827144515857 1.0 19.53441237239102 2.7162228248042375 9.606738545937045 0.883175311830753 0.9911141934613662 0.29448400606721514 0.07026426422571343 0.44068585256709125 183.5574760291472 0.021087216897328512 0.02016811290026134 520.2628609318043 -2.7162228248042375 0.10793888163061316 ELELQFDLGNLLASDRNPPTGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELELQFDLGNLLASDRNPPTGLR 23 1 Q15050 Q15050 RRS1 Ribosome biogenesis regulatory protein homolog 0 158.37 1.9461e-11 132170000.0 51876.0 71771.0 78788.0 71544.0 64884.0 45562.0 63480.0 79369.0 76742.0 72451.0 False True 51596.70537996545 74159.85434851427 89880.66556242741 80601.46306442832 73146.59280240166 42412.4061814115 60409.22988285061 85291.9178076157 57829.962390115346 67827.11515157815 0.7607091244358332 1.0933658933124886 1.3251435707027286 1.188336889816151 1.0784270072364965 0.6253016376508043 0.8906354007221116 1.2574899819490728 0.8526083154337104 1.0 16.04957451241578 2.9767060843178514 24.702150878486243 0.9530756465944901 1.111746304881301 0.1366240314449152 0.1978048798016421 1515.628742627492 1607257.298103419 0.06509861964430873 0.06946625920343634 947.7768232006075 -2.9767060843178514 0.15867065828681093 ELELS(ph)DLDDFDPLEAEPPACELKPPFHSLDGGLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELELSDLDDFDPLEAEPPACELKPPFHSLDGGLER 35 1 P78413-2;P78413 P78413-2 IRX4 Iroquois-class homeodomain protein IRX-4 1 ELELS(1)DLDDFDPLEAEPPACELKPPFHSLDGGLER;ELELS(1)DLDDFDPLEAEPPACELKPPFHSLDGGLER 94.92 0.0002235 212252000.0 122745.0 116683.0 110839.0 110338.0 106572.0 126949.0 121953.0 119957.0 165013.0 129468.0 True False 122084.15455825138 120566.72311863695 126444.16777014147 124306.7794867899 120143.31249826713 118173.31443580189 116053.66748429867 128908.80046930355 124347.75721091592 121205.2413968686 1.0072514451623829 0.9947319251966924 1.0432235958849236 1.0255891416425282 0.9912385893022205 0.9749851827683003 0.9574971028216357 1.0635579698010813 1.0259272270557807 1.0 16.88709256247018 1.7236164006310062 24.999999999836277 1.0342609599072992 1.0005116287704479 0.20805519844554043 0.0268727427294043 1.364951216102622 2274.1036057175047 0.013149680240563098 0.007292086907920212 52.91958145135567 -1.7236164006310062 -0.0337493311368513 ELELVEDVWR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELELVEDVWR 10 0 A0A1B0GVV3;Q5EBL4-2;Q5EBL4 A0A1B0GVV3 RILPL1 RILP-like protein 1 0 ;; 133.13 0.00047738 30349000.0 103733.0 144796.0 138067.0 136310.0 140897.0 126908.0 129567.0 125336.0 118872.0 135122.0 False True 103174.51305381965 149615.44732896972 157505.63350012293 153566.83202382099 158839.39778805248 118135.14866929826 123299.349215994 134689.20876331208 89577.58840319251 126498.39827623559 0.8156191260897756 1.182745784671939 1.245119587650245 1.213982422832547 1.2556633123622134 0.933886517767012 0.9747107544140141 1.0647503098749926 0.7081321947459065 1.0 16.948759592055517 2.723218753120125 24.30295830078439 0.9537989401098235 1.154513249534278 0.32821903409830433 0.14603234159420087 701.108037353243 1110619.1877673443 0.04732576294123501 0.044783241482661086 528.711495466578 -2.723218753120125 0.20071430942445456 ELENAEFIPMPDS(ph)PSPLSAAFSESEKDTLPYEELQGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELENAEFIPMPDSPSPLSAAFSESEKDTLPYEELQGLK 38 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 ELENAEFIPMPDS(0.427)PS(0.427)PLS(0.061)AAFS(0.061)ES(0.011)EKDT(0.011)LPY(0.002)EELQGLK;ELENAEFIPMPDS(0.795)PS(0.191)PLS(0.012)AAFS(0.001)ES(0.001)EKDTLPYEELQGLK 124.52 1.0721e-08 142047000.0 235740.0 183891.0 175901.0 142878.0 167641.0 246920.0 201360.0 175169.0 280290.0 193447.0 True False 234470.8020331761 190011.70077054287 200666.3318410994 160966.34015038866 188989.0876639455 229851.0015871586 191619.44753010108 188241.0002701588 211216.28519357656 181101.04684169087 1.294696006026615 1.0492026638401557 1.1080351844487761 0.8888205946766121 1.0435560200220706 1.2691864878510746 1.058080286513224 1.039425246584628 1.1662896978072737 1.0 17.466435360144832 4.5479117459073155 0.009576894149443486 1.6330812511612178e-07 2.2198226482993078 0.061794973646125184 0.11299780542066097 25405.527530595366 40.151424853492486 4353.21589697503 4966.883474805756 35311.14058284227 -4.5479117459073155 2.2198224849911825 ELEPEMEFEIEPDKECK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEPEMEFEIEPDKECK 17 1 Q9H307 Q9H307 PNN Pinin 0 118.33 0.00072214 0.0 63959.0 57483.0 42420.0 37282.0 34339.0 53025.0 59978.0 55426.0 80702.0 71458.0 False True 63614.6518505129 59396.286905792724 48392.36727875021 42001.8973773904 38711.86810680097 49359.506557423825 57076.63500178975 59562.16956752521 60814.07345139681 66897.48926172832 0.9509273449953897 0.8878701960459525 0.7233809192662065 0.627854615186873 0.5786744545127168 0.7378379532946406 0.8531954731288095 0.8903498505675668 0.9090636154291101 1.0 16.029664445459147 1.8732810356497898 1.8555190267071338 0.9391120226704524 0.7440696478152389 0.37602938421305754 0.10574539671317786 0.41738347255551406 2.6977872115480426 0.07831645875168525 0.03570929270272021 74.69319480660153 -1.8732810356497898 -0.19504237485521347 ELEQHIQTS(ph)DPENFQSEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ELEQHIQTSDPENFQSEER 19 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 ELEQHIQT(0.068)S(0.932)DPENFQSEER;ELEQHIQT(0.288)S(0.712)DPENFQSEER 133.76 7.1251e-06 366310000.0 163246.0 166124.0 154288.0 158907.0 154005.0 178363.0 156035.0 165565.0 188808.0 166657.0 True False 162367.10167433575 171653.33691592157 176010.4093046634 179024.60990689805 173616.6238908496 166033.18563133976 148486.99093841508 177920.30102203475 142278.79829758033 156020.80757776377 1.040675946978475 1.1001951571771365 1.1281213835336446 1.1474406054312258 1.1127786516828257 1.0641733510357945 0.9517127442402598 1.140362646394814 0.9119219449410031 1.0 17.25137892011046 2.477463981564003 24.964317954605725 1.0221650638283601 1.1070172252092356 0.3725959505777875 0.06175707909878853 15.51212181697999 1130065.1553797247 0.02108161219191465 0.017822941599986663 300.2368407568891 -2.477463981564003 0.08485216138087548 ELEQTAENKPLGESFAEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELEQTAENKPLGESFAEFR 19 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 0 87.49 0.0029367 0.0 86579.0 76196.0 79614.0 83042.0 72641.0 84056.0 91440.0 77523.0 99655.0 78329.0 False True 86112.86828383109 78732.1377985454 90822.95918270666 93555.10868551192 81891.40077306058 78245.40656654061 87016.69786527826 83308.15991381764 75096.36055858535 73329.97615916915 1.174320145651153 1.0736692130875698 1.238551598401825 1.2758098882023683 1.1167520441477863 1.0670316651501712 1.186645658746716 1.136072371454069 1.024088162739643 1.0 16.16211544988306 1.2399636406146293 3.225180779738693 1.0004147129083998 1.1605763799527848 0.4777450733042087 0.06203198512054741 0.21668492206960682 3.94369261890174 0.05817032681994412 0.01664337571987751 17.376553451483197 -1.2399636406146293 0.16016166704438506 ELESPLT(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELESPLTPGK 10 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 ELESPLT(1)PGK 103.89 0.03079 423010000.0 1072800.0 727460.0 640280.0 567440.0 573860.0 916760.0 887400.0 810050.0 1223800.0 966690.0 True False 1067024.1639992844 751673.0663411432 730425.8585864741 639277.8458190653 646937.6694652961 853386.5390209137 844473.0718027978 870500.0443505545 922210.8880798421 904995.0165750535 1.1790387178455732 0.8305825474993708 0.8071048405888079 0.7063882497810953 0.7148521899199254 0.9429737439334731 0.9331245546508086 0.9618837987030636 1.0190231671881929 1.0 19.787550322342874 2.5065493997867367 21.406389920911348 0.9680916705217855 0.8357899431738454 0.19781267092496235 0.12446437546566139 195.9192201537433 142513.61490251517 0.04167477052467404 0.03918280389575043 321.03279492987417 -2.5065493997867367 -0.1323017273479401 ELESQISELQEDLESER ddPTM_BT-474_Trastuzumab_2h_R1 6 ELESQISELQEDLESER 17 0 P35579 P35579 MYH9 Myosin-9 0 ;;;;; 315.73 6.5693e-58 1101025000.0 475764.0 510609.0 482669.0 435620.0 450116.0 485062.0 463733.0 446259.0 473573.0 522011.0 False True 473202.5394863497 527604.3118953421 550624.5997658437 490769.44733487524 507435.60455344716 451530.8056531284 441300.463157907 479561.11263728613 356867.2797030846 488695.8110638977 0.9682966965814196 1.079617013181963 1.1267225691317595 1.0042432045129734 1.0383465400465632 0.9239506364299287 0.9030166683794356 0.9813080075175492 0.7302441961312898 1.0 18.89857721277781 2.766002233384758 2.006090358193748 0.9078711836625484 1.0541499451504803 0.426642405621681 0.07841059112195507 0.32150797669501846 2.554708902941776 0.02779039477562908 0.0279497087993722 583.4481046820111 -2.766002233384758 0.14627876148793195 ELEVQHPAAK ddPTM_BT-474_Trastuzumab_2h_R1 6 ELEVQHPAAK 10 0 P50990-2;P50990;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;;;; 103.91 0.0027519000000000003 4818150000.0 8801660.0 8949430.0 8369200.0 7942350.0 7714810.0 9363430.0 9587650.0 8788970.0 12003160.0 10005220.0 False True 8754272.84051636 9247306.367505314 9547510.613609543 8947850.695652513 8697245.324238602 8716158.123243371 9123858.741120243 9444847.570885371 9045142.052103631 9366678.293700203 0.9346187160505202 0.9872556820623192 1.0193059176625041 0.9552853653221566 0.9285303766745309 0.9305495342042059 0.974076236530588 1.0083454640731861 0.9656723299856653 1.0 23.15910608478212 1.9946076115546987 24.80483336726847 0.9920026198804632 0.9609016619861795 0.2081710486644961 0.027966784003897002 367.7615023672013 1691695.513132242 0.011711892271299469 0.008384175477079822 98.76603326096763 -1.9946076115546987 -0.031100957894283687 ELFDDPS(ph)YVNVQNLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELFDDPSYVNVQNLDK 16 0 P29353-2;P29353-7;P29353;P29353-6;H0Y539;X6R6D0;P29353-5;P29353-3;Q5T188 P29353-2 SHC1 SHC-transforming protein 1 1 ELFDDPS(0.653)Y(0.347)VNVQNLDK 132.84 3.8766e-05 88064000.0 154560.0 143740.0 129620.0 106600.0 117200.0 154060.0 135240.0 127030.0 199660.0 154470.0 True False 153727.86613323053 148524.29900733504 147869.3693227629 120095.5490700557 132124.72530117573 143410.19481823145 128697.92453302957 136509.62364526984 150456.46830693042 144611.5923515793 1.063039716480597 1.0270566597886783 1.02252777193175 0.8304697231884407 0.9136523784341885 0.9916922460100777 0.8899557942778165 0.94397427913931 1.0404177553148095 1.0 17.141823680652497 3.9723832392157394 24.673482611339832 0.9387034925533498 1.0399842353190047 0.36152298661814986 0.05688212805087464 579.4347718340798 517682.7256163378 0.014456707271671925 0.02615178468602095 9383.89715140046 -3.9723832392157394 0.10128074276565491 ELFDDPSY(ph)VNVQNLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELFDDPSYVNVQNLDK 16 0 P29353-2;P29353-7;P29353;P29353-6;H0Y539;X6R6D0;P29353-5;P29353-3;Q5T188 P29353-2 SHC1 SHC-transforming protein 1 1 ELFDDPS(0.443)Y(0.557)VNVQNLDK;ELFDDPS(0.231)Y(0.769)VNVQNLDK 276.41 2.7789999999999997e-34 635270000.0 977100.0 876500.0 791900.0 712020.0 790180.0 1048400.0 792020.0 855370.0 1301180.0 905780.0 True False 971839.4021660164 905673.7726445615 903392.6366818086 802161.6589949442 890804.7392362042 975926.575668141 753706.9667897824 919202.0528808512 980521.6239187195 847972.3449227279 1.1460744067715747 1.0680463556003017 1.0653562490462245 0.9459762028772787 1.0505115462431496 1.1508943440332042 0.8888343721380023 1.0840000365396518 1.1563132097286384 1.0 19.693657689115113 4.736649459316435 1.9826015229551874 1.0406427618247414 1.1765159992205665 0.13629523379125763 0.0785358193261911 1.5250722281063818 6.419107752383827 0.01969120990028465 0.3772949765972446 54531.753049905616 -4.736649459316435 0.13587323739582513 ELFDVVANPLVNDLIHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELFDVVANPLVNDLIHGK 18 0 Q02241;H7BYN4;A0A2U3TZL8;A0A2R8Y531;H0YME6;H0YMJ4;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 0 112.74 0.00026722 20694000.0 79468.0 69157.0 67606.0 58676.0 67436.0 89779.0 88585.0 77195.0 101400.0 80888.0 False True 79040.15311772475 71458.84893871068 77124.33715811383 66104.3755838141 76023.57487551264 83572.78904703363 84299.80512243732 82955.68288826739 76411.32869038738 75725.65858829918 1.0437697682821832 0.9436543738393081 1.0184703387978296 0.8729455354519462 1.0039341524757566 1.1036257802840286 1.113226437299853 1.0954765456617022 1.0090546601359522 1.0 16.208494599786228 2.917251726268232 5.353775717529876 1.0753660203204818 0.9676330955975216 0.38732132649497564 0.055446551908868005 0.19555437845073997 9.440496260096499 0.016540324608972257 0.01774836761255269 826.5168774306735 -2.917251726268232 -0.10773292472296014 ELFEER ddPTM_BT-474_Trastuzumab_2h_R1 3 ELFEER 6 0 Q9H307 Q9H307 PNN Pinin 0 ;; 110.36 0.066925 1481090000.0 1646260.0 1774430.0 1629930.0 1639820.0 1516520.0 1798870.0 1720960.0 1653230.0 2208590.0 1850100.0 False True 1637396.7190766798 1833490.8298844134 1859409.9763944668 1847421.0438654681 1709639.8328817345 1674518.350984498 1637710.5900943691 1776602.4175318384 1664312.5880897685 1732025.0340496993 0.9453655038970388 1.058582176261895 1.0735468251558264 1.0666249087323858 0.9870757057618126 0.9667980069948855 0.945546720110153 1.0257371473308972 0.960905619359548 1.0 20.72402835172042 3.1632464584937625 7.7193056960540165 0.9818625960465522 1.0402129860976053 0.31866568885639823 0.039239663228072263 0.28173499776429856 24.898946752165294 0.011517235096101893 0.01381772860584732 1456.285275869906 -3.1632464584937625 0.058350390051053025 ELFEMAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELFEMAR 7 0 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 ; 134.85 0.0072917 347490000.0 301490.0 404510.0 410150.0 367000.0 246750.0 298800.0 354750.0 282180.0 459310.0 332290.0 False True 299866.8113386881 417973.87081854173 467895.55491229135 413462.16237064183 278172.14989816654 278144.65929954284 337589.38722339744 303237.70448100666 346119.20493867644 311082.96771221823 0.9639448072132764 1.343608986028473 1.5040860589485565 1.329105754041585 0.8942056582008135 0.8941172875682911 1.0852069134678572 0.9747808011190467 1.112626665111637 1.0 18.24693988162092 3.2470133453224106 24.99980750861702 0.9928041618286305 1.304995201781161 0.5023282948522882 0.14168910978740562 149.1423357468574 441100.98338012124 0.04026242916305856 0.053651485764509524 1766.0920896377743 -3.2470133453224106 0.3121910399525305 ELFGDDS(ph)EDEGASHHSGSDNHSER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELFGDDSEDEGASHHSGSDNHSER 24 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 ELFGDDS(1)EDEGASHHSGSDNHSER 140.9 4.806600000000001e-07 201800000.0 37125.0 62046.0 58217.0 64068.0 63549.0 61102.0 65860.0 33288.0 60456.0 60311.0 True False 36925.123124975275 64111.16360240094 66413.44756876484 72179.00223095997 71641.58846556663 56878.16255863675 62674.100190367775 35772.11959303899 45557.42886889603 56461.90034515508 0.6539830026841059 1.1354765463168162 1.1762524315117864 1.2783665053730973 1.2688483389261993 1.0073724442666123 1.1100246326679961 0.6335620900883926 0.8068702716415964 1.0 15.784990066119436 1.7553545494510443 24.999999999999876 0.7826576974323386 1.1060497364877298 0.31063953045740156 0.1860541821458997 6.466186133937923 9636.602561030984 0.08606018196728367 0.04772533674609289 56.93175207744287 -1.7553545494510443 0.32339203905539116 ELFGKDEQQR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELFGKDEQQR 10 1 G3XA94;Q9NPL8 G3XA94 TIMMDC1 Complex I assembly factor TIMMDC1, mitochondrial 0 ;;;;; 52.79 0.088821 61392500000.0 15267640.0 35344370.0 37906720.0 43843890.0 37639320.0 28324900.0 34912270.0 22326000.0 12775750.0 33843110.0 False True 15185440.722634269 36520785.98932719 43243656.68488323 49394521.97858466 42432464.29627181 26366866.33264264 33223430.122277107 23992079.48913088 9627337.59877926 31683213.74525581 0.4792897855858486 1.1526856550275224 1.3648759571102052 1.5590123645831513 1.3392727340554451 0.832203025382511 1.0486130096967177 0.757248923105959 0.3038624072730261 1.0 24.91721534493174 1.9959367324236639 1.463608491315934 0.6499227514438684 1.1842093630212642 0.2667496576526749 0.32342627223821513 0.5200885895059201 2.076035014108522 0.22644353841161804 0.10756596541152184 99.06876120209137 -1.9959367324236639 0.5342866115773959 ELFGPELFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELFGPELFR 9 0 P35249;C9J8M3;C9JZI1;P35249-2;C9JXZ7;C9JTT7 P35249 RFC4 Replication factor C subunit 4 0 ; 102.95 0.008147100000000001 95198000.0 113756.0 144750.0 132390.0 126667.0 128087.0 133908.0 137515.0 124487.0 143944.0 145964.0 False True 113143.55033547989 149567.91624677714 151029.36124549113 142703.02921254004 144398.12021887107 124651.25514552605 130862.87409168552 133776.8520721774 108470.9299507803 136648.45255393258 0.827989986134854 1.0945452615919342 1.105240186937958 1.0443076854911169 1.0567124436471744 0.9122039277856333 0.9576608563498836 0.9789854884699714 0.793795523648311 1.0 17.06010959690014 2.7385964948571244 24.999987638202185 0.9339940202567739 1.0350266586176975 0.22598906613756442 0.08886200987314961 4.840426687656351 3373817.00123137 0.027394827786074834 0.027422364212889953 547.7677946643474 -2.7385964948571244 0.10103263836092358 ELFLAEHS(ph)DLEEGGLDLTVSLKPVSFYISDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELFLAEHSDLEEGGLDLTVSLKPVSFYISDKK 32 2 Q9H8G2;A0A3B3ISJ3 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 ELFLAEHS(0.999)DLEEGGLDLTVSLKPVSFYISDKK 74.575 0.0012452 21396000.0 9706.6 6675.0 7480.8 8230.2 7004.3 10167.0 11061.0 9786.3 15180.0 11220.0 True False 9654.340744104647 6897.1733398772885 8534.031615720764 9272.142476138584 7896.25608726131 9464.179220543672 10525.937172876665 10516.603399824487 11439.09240157869 10503.929994074719 0.919117011399607 0.6566278853503397 0.8124608237616608 0.8827307951756164 0.7517430230128722 0.9010131661085354 1.0020951376117664 1.0012065394339944 1.0890297639104123 1.0 13.358641585742678 2.3842796625506875 2.286089437056157 1.0260806798460538 0.8003889919867546 0.6776781307185769 0.07088965058042278 0.1697613248687104 1.8173917655113014 0.02825725429441897 0.021916499213290815 242.2588562761436 -2.3842796625506875 -0.22569168785929916 ELFLAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELFLAGR 7 0 Q7Z4W1;J3KS22;J3KRZ4 Q7Z4W1 DCXR L-xylulose reductase 0 ;;; 154.11 0.0039561 625840000.0 548460.0 740510.0 656790.0 658560.0 575860.0 647620.0 629360.0 505850.0 646950.0 639500.0 False True 545507.1522996341 765157.427702252 749260.3230789801 741933.6284763229 649192.3576103672 602851.5537335004 598915.4524113248 543599.0956542535 487517.8411858585 598686.5624965047 0.9111732022594358 1.2780601330211403 1.2515068318129396 1.2392688845102555 1.084360996684567 1.0069568811092533 1.0003823201139936 0.9079861311526048 0.8143123158684636 1.0 19.191441363790247 2.577453449659918 1.3672763266057029 0.9106061088338571 1.181126893818098 0.5010973590040557 0.10745055849083202 0.3272738126999668 1.2420865268489834 0.051320995723300095 0.04191792752799945 377.96662235511275 -2.577453449659918 0.27052078498424104 ELFQETLESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELFQETLESLR 11 0 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;M0QY43 Q7Z406 MYH14 Myosin-14 0 77.062 0.07827 21257000.0 15561.0 21242.0 24666.0 26862.0 20401.0 17783.0 20537.0 17638.0 20684.0 18527.0 False True 15477.221304989625 21949.02712893984 28138.758399284616 30262.72644577708 22998.946423799393 16553.703066679274 19543.546851041316 18954.237123949224 15586.705351400115 17344.590998237287 0.892337058081252 1.2654681295840586 1.6223362316323475 1.7447933161901972 1.326001081613095 0.9544014654690681 1.126780496180481 1.092803925205012 0.898649345665411 1.0 14.0821982004694 2.8398822700258153 5.220432812199322 1.0364834572414598 1.4054600269958146 0.3912315774503964 0.22032316932840068 0.2554850105493373 10.59660748400999 0.07304999908327996 0.07766007682945507 691.643452525373 -2.8398822700258153 0.3689765697543548 ELFS(ph)PLHALNFGIGGDTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELFSPLHALNFGIGGDTTR 19 0 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 ELFS(1)PLHALNFGIGGDTTR 108.57 0.0001843 0.0 25547.0 26455.0 21320.0 25642.0 23329.0 20778.0 24231.0 20193.0 32583.0 24551.0 True False 25409.457790538545 27335.5386826148 24321.67068323797 28888.274570866524 26299.8098681837 19341.66576615092 23058.85395859094 21699.904197976346 24553.356239831275 22984.134160831396 1.1055216443106342 1.1893220989459279 1.0581939051106806 1.2568789569674859 1.144259326200886 0.8415224881132212 1.0032509294122933 0.9441253712726938 1.068274143721023 1.0 14.48835069872123 2.8380680831313243 8.721703431622293 0.9688709792878262 1.1545198180021947 0.6060548144178919 0.07230142788084451 0.216873589867798 17.404931046919035 0.020949383389961315 0.02223593483017344 688.7602629013871 -2.8380680831313243 0.18564883871436855 ELFSPLHALNFGIGGDGTQHVLWR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELFSPLHALNFGIGGDGTQHVLWR 24 0 M0R1K3;Q15102;M0R389;M0QZT2;M0QXS6;M0R323 M0R1K3 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 ; 314.88 7.953599999999997e-74 2868900000.0 787440.0 1154390.0 1316780.0 1301770.0 1125530.0 1218330.0 1235000.0 1064380.0 1220990.0 1110940.0 False True 783200.5105328086 1192813.173306509 1502171.1783430611 1466573.9485265142 1268859.5739610284 1134109.7147403338 1175258.3318418479 1143809.4404121242 920093.3749277714 1040038.8580764132 0.7530492773908124 1.1468928915912402 1.4443413980910071 1.4101145713334136 1.2200116987050145 1.09044936728413 1.1300138669967847 1.099775678119987 0.8846721137222844 1.0 19.988206000870214 1.6467554298733793 1.270579464826755 0.9495550979829119 1.2032879325444175 0.1831836514021925 0.18207527642975116 0.7265032461729255 2.2352652281770884 0.16457738036600347 0.060587889618687246 44.335889892249206 -1.6467554298733793 0.2537328345615055 ELFSPLHALNFGIGGDTTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELFSPLHALNFGIGGDTTR 19 0 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 0 ; 245.75 1.3277e-24 3036100000.0 1414380.0 2019050.0 1842170.0 1884580.0 1744490.0 1891980.0 1902700.0 1589440.0 1813780.0 1933860.0 False True 1406765.1352323897 2086252.8587085002 2101531.5235713175 2123167.634769661 1966640.4610976796 1761191.8758418618 1810659.1319801495 1708052.0838127802 1366798.2224068101 1810439.3991391545 0.7770296735153313 1.1523461429863338 1.160785345574436 1.1727360969824263 1.0862779842466956 0.9727980271967627 1.0001213698956726 0.943446151594437 0.754953865374731 1.0 20.787908455597172 2.0938664016676896 1.3166476441974901 0.8888038738468744 1.0804843759657592 0.246047165500884 0.12279760743663416 0.5814920981645627 1.897219122754133 0.0828413894195817 0.041917139873531184 124.12704073551537 -2.0938664016676896 0.19168050211888477 ELGDHVTNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELGDHVTNLR 10 0 G3V192;P02794;G3V1D1 G3V192 FTH1 Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed 0 ;; 181.44 1.887e-06 885340000.0 459010.0 667720.0 641030.0 615700.0 647570.0 667270.0 675580.0 583690.0 757730.0 610290.0 False True 456538.7411608052 689944.6565547357 731281.4520673571 693647.556870857 730034.2010518983 621143.1954846241 642899.6144337782 627247.9117177632 570997.5945618068 571340.7697044445 0.7990655758680997 1.2075886986178936 1.2799392076389897 1.2140697700072798 1.2777561829336042 1.0871676386860027 1.1252472228900299 1.0978525338603782 0.999399351208885 1.0 19.123991955788387 1.4710676908523883 1.3168643813474115 0.9910425710332541 1.1613662281420667 0.14779228597408134 0.1303165580875764 0.7242710517977851 2.4024703726006 0.11662923554968176 0.03916442124528945 29.584735499839635 -1.4710676908523883 0.1703236571088126 ELGDVLFQMAEVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELGDVLFQMAEVHR 14 0 Q9UQB8;Q9UQB8-2;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;Q9UQB8-6;I3L3J7;I3L125;I3L0M4;I3L526;I3L327;I3L1C8;I3L113;I3L2M4;I3L3C5;I3L2J6 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 0 ; 216.54 6.0898e-12 184054000.0 281890.0 349730.0 325240.0 339790.0 291350.0 355740.0 349200.0 303620.0 372300.0 329150.0 False True 280372.335560923 361370.55163375015 371030.9649632416 382807.3791605463 328451.6955332559 331148.5311218849 332307.8619264565 326277.6661511206 280551.65356441 308143.36520050716 0.9098762693737905 1.1727351370963588 1.204085522730025 1.2423028446887237 1.065905460335108 1.0746573462855784 1.0784196560916561 1.0588502073987982 0.9104581998118201 1.0 18.233242202439733 1.6812710147359025 1.1622885938739236 0.9615934736776416 1.1268631486723373 0.28757450240659366 0.09028553444321 0.5732453036745977 1.4599592713534828 0.07861276460456973 0.029899371221439007 48.00329122831668 -1.6812710147359025 0.1652696749946957 ELGELIPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELGELIPLR 9 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;H0YFY6;K4DIE0 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 90.709 0.026165 9819100.0 26236.0 33592.0 34170.0 37537.0 31717.0 31341.0 31284.0 32665.0 41189.0 34144.0 False True 26094.748291093616 34710.089413207184 38980.83898903573 42289.180351244664 35755.97194861256 29174.47043877833 29770.673403514476 35102.6281695091 31038.522854323113 31964.900687850914 0.8163563073734685 1.0858813469237416 1.2194888189923707 1.322988010011799 1.1186010648924851 0.9127033030284635 0.9313551039696986 1.0981616527546654 0.9710189046862926 1.0 14.964200991070948 2.8335119424710205 8.065320643579444 0.993628833748489 1.1294999118958446 0.19399062714353787 0.12940543855950834 0.5379882292917482 41.171246961665794 0.04220551586313489 0.04480426301476939 681.5723167233601 -2.8335119424710205 0.13587107814735566 ELGELSPHWDNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELGELSPHWDNLR 13 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3;E9PG59 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ;;; 225.13 1.2964e-11 3139300000.0 1988410.0 2572330.0 2476200.0 2476770.0 2478540.0 2534630.0 2519120.0 2292580.0 2647260.0 2419110.0 False True 1977704.621493121 2657948.4490436767 2824827.4364837655 2790328.8280510516 2794167.3775424566 2359416.993977244 2397260.541627072 2463663.9610853563 1994878.2444666154 2264720.3286957312 0.8732666000450905 1.1736320884152651 1.2473184439999283 1.2320853893946464 1.2337803225140995 1.0418138452159562 1.0585238765475609 1.0878446799231047 0.8808497098692447 1.0 21.11090147155343 1.7969784839950589 1.1205133134862422 0.9607227754298322 1.1536710000773505 0.2749610007623452 0.11239584303260738 0.6361294717811888 1.4811611598917422 0.09566477338072851 0.03903636845906206 62.65828214663897 -1.7969784839950589 0.19294822464751826 ELGENLDQILR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELGENLDQILR 11 0 Q96P70 Q96P70 IPO9 Importin-9 0 ; 171.85 3.2677e-05 136450000.0 153149.0 178449.0 148231.0 147718.0 151995.0 165806.0 162348.0 150741.0 173043.0 167202.0 False True 152324.4628004535 184388.5670903013 169100.6363530512 166419.0836541322 171350.66230505303 154344.22148534123 154494.60701041308 161990.05886728808 130398.87130740331 156531.02521116595 0.9731263345075671 1.1779681813337295 1.0803010848803194 1.0631699589881745 1.0946753978892994 0.9860295828071487 0.9869903222188338 1.0348750904094426 0.833054476781779 1.0 17.256089109116633 2.383512194555711 0.9510762778030375 0.9521170721819618 1.0873707202785392 0.3823580067183818 0.06849069501195489 0.5878855449956534 1.047169603500393 0.04572041953595504 0.029599093479529177 241.83112407437233 -2.383512194555711 0.13525364809657736 ELGFSSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELGFSSHR 8 0 Q9H0A0;E9PMU0;E9PJN6 Q9H0A0 NAT10 N-acetyltransferase 10 0 ; 96.948 0.010025 0.0 180588.0 315790.0 303070.0 312330.0 275680.0 240640.0 239400.0 215567.0 244760.0 270320.0 False True 179615.7342732129 326300.8792509142 345739.62166833645 351870.94597608404 310786.2139166222 224005.1232056292 227819.30740318898 231653.70416704623 184442.17761596848 253067.9461674044 0.7097530010948013 1.2893805169425376 1.366192862053062 1.390420838770792 1.228074193604263 0.8851580241515449 0.9002298033133226 0.9153814525914212 0.7288247303115979 1.0 17.949165260297686 2.737868375574001 23.322278174892105 0.8848655585391247 1.2220810369307433 0.401755914355977 0.18839419026091542 23.76995004505354 800818.1548513592 0.059826698672333 0.0595739050388233 546.8502003632973 -2.737868375574001 0.3372154783916186 ELGGLGMLSMGHVLIPQSDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELGGLGMLSMGHVLIPQSDLR 21 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 184.62 3.8899e-17 909180000.0 540580.0 725540.0 702750.0 723590.0 687620.0 696440.0 754780.0 562190.0 818290.0 739350.0 False True 537669.5773440838 749689.1603018079 801691.0915875 815196.4198086456 775184.3311569488 648296.7420434192 718268.4078603964 604143.4725429759 616633.3940242316 692164.0500106196 0.7767950059466894 1.0831090697217023 1.15823855858333 1.1777503032642889 1.1199430700641784 0.936622961035715 1.0377141197225952 0.8728327808034914 0.8908775224815141 1.0 19.400754486413636 2.343680573088754 1.7227763463998473 0.9225469018331446 1.0717085940923403 0.17252040247382106 0.115414340945516 0.5535178721203894 3.3329425016471346 0.05773284217288679 0.0399750858610608 220.63813257468905 -2.343680573088754 0.14916169225919573 ELGIIPTIIRDEELK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELGIIPTIIRDEELK 15 1 Q8NDH3-3;Q8NDH3-2;Q8NDH3;Q8NDH3-5;Q8NDH3-4;H0YEP3 Q8NDH3-3 NPEPL1 Probable aminopeptidase NPEPL1 0 ;; 226.67 7.6052e-13 459500000.0 449100.0 437030.0 395880.0 423090.0 403760.0 486830.0 501810.0 428370.0 677910.0 486580.0 False True 446682.0954997013 451576.2793597866 451616.4629493554 476653.1506196046 455176.44272698596 453176.5879745524 477535.533199642 460337.1446187847 510848.1640286037 455526.04781790305 0.9805851885735914 0.9913292149218756 0.9914174285152834 1.0463795712734898 0.9992325244789144 0.9948423150451984 1.048316634113835 1.0105616283062806 1.1214466581564524 1.0 18.797174026780876 1.9627833984485124 1.453388228459659 1.0511501396223273 1.001605119818032 0.2561436123801166 0.03504401345908313 0.571335253155302 2.2448465688014845 0.023444111777564034 0.010825355373399223 91.78746982633366 -1.9627833984485124 -0.049545019804295265 ELGITALHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELGITALHIK 10 0 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ; 150.35 2.1727e-05 3043300000.0 3375300.0 4069300.0 3706700.0 3153500.0 3047900.0 3691800.0 3923300.0 3299400.0 5304700.0 3725100.0 False True 3357127.759831081 4204744.190556204 4228571.140786031 3552732.776664362 3436031.9986813418 3436594.5555624226 3733514.9905385594 3545617.9820137257 3997427.764338242 3487360.92878144 0.9626556666746091 1.2057094967871402 1.2125418696663515 1.0187453633902368 0.9852814402786713 0.9854427533439287 1.070584624529567 1.0167051975468 1.146261555936807 1.0 21.73370425469385 3.7122568871937776 24.633351388765913 1.0302856413533135 1.1348430700718808 0.23536130284404977 0.07813652863600112 771.7811665678868 722770.3327304327 0.02037811463517535 0.03158014319146711 5155.334948582004 -3.7122568871937776 0.10455742871856732 ELGIWEPLAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELGIWEPLAVK 11 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 157.95 0.0029755 0.0 202130.0 203780.0 193240.0 151700.0 150350.0 197270.0 219570.0 198100.0 252110.0 201620.0 False True 201041.7545387544 210562.69411238842 220446.51232780967 170905.2044458486 169496.18130573185 183633.18922363064 208948.56026114567 212883.22793141718 189980.86860092267 188752.43898443348 1.0651081152669737 1.1155495274408276 1.1679134506229614 0.9054463368282263 0.8979814100294106 0.972878497420502 1.1069979354194082 1.1278435874885504 1.0065081522818917 1.0 17.526135760930227 3.761595254270819 24.9566961166785 1.0155358909846823 1.1161262758953496 0.3231625454375813 0.07371886981578554 1234.6886610044817 1337708.9317799169 0.02266830647631409 0.04083078238671852 5775.575351316962 -3.761595254270819 0.1005903849106673 ELGLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELGLGR 6 0 P07384;E9PRM1;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PLX0;E9PIA9 P07384 CAPN1 Calpain-1 catalytic subunit 0 131.42 0.035677 276030000.0 213920.0 254710.0 228450.0 236900.0 240240.0 263260.0 234790.0 221480.0 249790.0 251450.0 False True 212768.27848874658 263187.8683745532 260613.77427700357 266891.51571009576 270833.1399859597 245061.45584738153 223432.31071509927 238007.96225265163 188232.60151451544 235402.2457228243 0.9038498245223701 1.11803465411475 1.1070997792598152 1.1337679251554325 1.1505121336219268 1.0410327866452493 0.9491511435204442 1.0110692084598694 0.7996210951026821 1.0 17.844768558100032 2.3453595632101263 3.310483145524451 0.9471998164936547 1.0895671379189236 0.3904959109896744 0.08377727562354273 0.25642320401673824 5.574353623848085 0.031231790008120822 0.024999483223041748 221.49277444972907 -2.3453595632101263 0.14236732142526887 ELGLPEELVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELGLPEELVSR 11 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;; 155.06 7.3775e-05 236147000.0 208628.0 276428.0 246888.0 258407.0 226170.0 251116.0 237254.0 220880.0 267562.0 254027.0 False True 207504.7700287498 285628.73887574533 281647.68441103434 291121.2997049332 254971.40888538343 233756.9419834803 225777.11762170523 237363.18720591362 201624.9302471143 237814.7793765437 0.872547831437328 1.2010554584729802 1.1843153110559537 1.2241514193026106 1.0721428228885421 0.9829369839683578 0.9493821965716492 0.9981010760903339 0.8478233807658848 1.0 17.859478850877338 2.8045582849733943 3.018667397520973 0.9560749731311321 1.1319257347230254 0.38058128115203327 0.09987856871275831 0.26696986306178916 4.801626962625917 0.032422107926911234 0.033764641416545185 637.6146470750618 -2.8045582849733943 0.17585076159189328 ELGMEERPYSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELGMEERPYSSR 12 1 Q9NX46 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 0 ; 149.83 6.1654e-05 867800000.0 826480.0 818870.0 762900.0 761540.0 819910.0 930260.0 844970.0 726950.0 1039600.0 866360.0 False True 822030.3235105597 846125.592932632 870309.6887543275 857950.8859175444 924320.6785126884 865953.3157964944 804095.5730011398 781198.7003773035 783404.5099262993 811068.1630718869 1.0135157079734878 1.0432237775527602 1.073041364930496 1.0578036778907596 1.1396337824577683 1.0676702097598458 0.991403200879765 0.9631726850411019 0.9658923202695904 1.0 19.629463639672736 2.184848417021017 4.349430490673257 0.973782924486172 1.0683792765055458 0.6444436839531054 0.03124252821947206 0.13203757043483969 5.158541666608639 0.012825946608296234 0.009455998848885904 153.05531553300855 -2.184848417021017 0.09459635201937378 ELGNDAYK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELGNDAYK 8 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;; 121.85 0.0032934 1323050000.0 1964590.0 2006250.0 1808910.0 1758850.0 1834450.0 2289810.0 2162330.0 2123950.0 2926240.0 2243920.0 False True 1954012.865726467 2073026.818446267 2063588.8046724212 1981520.229661045 2068056.333862984 2131520.824332953 2057729.8369972343 2282449.9341995683 2205107.361607092 2100711.1044834373 0.9301673426470304 0.986821469178658 0.9823286982528021 0.9432616533668007 0.984455372968344 1.0146663288368212 0.9795396580736541 1.0865130047288536 1.0496956753838484 1.0 21.00244634162229 2.2916893304713493 1.3028490096159395 1.0494436408694636 0.965578562884854 0.5098644511303847 0.030700864827144767 0.3216064921695845 1.0729304381000926 0.018068061619275655 0.010966751835974321 195.74439286969695 -2.2916893304713493 -0.08386507798460963 ELGPQDLLWMLDHQEDGGEALR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELGPQDLLWMLDHQEDGGEALR 22 0 Q8N0W3-2;Q8N0W3 Q8N0W3-2 FUK L-fucose kinase 0 ;;;;; 176.46 3.2654e-13 279029000.0 106332.6 140284.5 138406.0 128219.0 129982.6 143576.5 136622.4 117314.1 152206.0 135161.6 False True 105760.11709626258 144953.78477872896 157892.36175348202 144451.5122534097 146535.1136427696 133651.39449772687 130013.45256374886 126068.67385092944 114696.87075590821 126535.47097033246 0.835813991802023 1.1455585036129108 1.2478110726003582 1.141589082853122 1.158055622815252 1.0562365909956015 1.0274862184235427 0.9963109386180539 0.9064404619223337 1.0 16.949182338563467 2.094962460646657 1.539854323507099 0.962208944343553 1.1162725486222547 0.24744438286747505 0.10290574404965404 0.5392208180982937 2.4270513531593005 0.06512338771634345 0.034114043629157514 124.44070436197049 -2.094962460646657 0.1540636042787017 ELGQSGELQHSNS(ph)DGEDFPVALFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELGQSGELQHSNSDGEDFPVALFGK 25 0 Q9H0M4-4;Q9H0M4 Q9H0M4-4 ZCWPW1 Zinc finger CW-type PWWP domain protein 1 1 ELGQS(0.007)GELQHS(0.168)NS(0.825)DGEDFPVALFGK 127.83 7.5725e-05 38289000.0 36235.0 36529.0 36807.0 29010.0 33440.0 38104.0 40488.0 35346.0 57246.0 39867.0 True False 36039.914786086985 37744.845682753206 41989.10566782084 32682.663025537677 37698.385785591454 35469.96016716793 38529.44076082006 37983.698003351245 43138.490357099734 37322.65392814409 0.9656310844205581 1.0113119435563704 1.1250300085481835 0.8756789666796039 1.0100671259383307 0.9503600744860458 1.0323338965926525 1.0177116042304986 1.155825907775815 1.0 15.187763956115333 1.4536065822708648 4.742736279634496 1.0815203690226094 0.9973889608421046 0.17293242329991654 0.06957699440178118 0.29881658211231904 13.294213464271005 0.04406219156142013 0.016993754832077268 28.418855400329903 -1.4536065822708648 -0.0841314081805048 ELGTVMR ddPTM_BT-474_Trastuzumab_2h_R1 5 ELGTVMR 7 0 P0DP25;P0DP24;P0DP23;E7EMB3;M0QZ52;F8WBR5;G3V479;P27482;C9J7T9;P02585 P0DP25 CALM2;CALM3;CALM1;CALML3;TNNC2 Calmodulin-like protein 3;Troponin C, skeletal muscle 0 ;;;; 162.95 0.012629 0.0 2712000.0 3266260.0 3076510.0 3030590.0 2798900.0 3060970.0 3088280.0 2660210.0 3545380.0 3101390.0 False True 2697398.893331526 3374975.489604132 3509655.866495708 3414262.383266611 3155323.324619975 2849372.3486483325 2938888.0980247306 2858728.3784726695 2671668.604658044 2903456.6349664377 0.9290301982976599 1.1623991379651326 1.208785357504152 1.1759302144032462 1.0867471849313322 0.9813724490778454 1.0122032003618 0.984594825369491 0.9201682479025305 1.0 21.469340055926832 2.8359020668838366 3.42682624613232 0.9811698119996891 1.128869072065785 0.44656699277171297 0.07413634273405209 0.22801633343628086 5.057166874809463 0.02414371426804693 0.025593445170527345 685.3336667417618 -2.8359020668838366 0.1476992600660959 ELHCPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELHCPDR 7 0 Q17RN3;Q17RN3-2;K7EQL1;K7EQT7 Q17RN3 FAM98C Protein FAM98C 0 77.282 0.038468 218480000.0 96822.0 122520.0 108320.0 115280.0 109730.0 113230.0 110140.0 97690.0 117420.0 113630.0 False True 96300.72110993537 126598.00413509594 123570.51446568193 129874.43618007516 123703.4650793347 105402.67661474983 104812.1074243409 104980.12385976862 88483.41434738928 106378.03611646265 0.9052688376809792 1.1900765304267928 1.1616168052810916 1.220876422628151 1.1628665991154807 0.9908311946965725 0.985279586376201 0.9868590142502386 0.8317827399118146 1.0 16.698840782636243 2.643646061036354 4.120364200980619 0.9585848413272127 1.1385253695118793 0.45891679766451643 0.09197534870464419 0.210038276888526 6.368379483975548 0.030524425943610205 0.028768326864685355 440.1959687559441 -2.643646061036354 0.17994052818466666 ELHEVCHLLEQER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELHEVCHLLEQER 13 0 Q15276-2;Q15276 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 208.15 2.7872e-08 284840000.0 113950.0 134980.0 134470.0 133640.0 141250.0 136830.0 141970.0 75389.0 140340.0 129180.0 False True 113336.50586103504 139472.7277028668 153402.20716580728 150558.81029758198 159237.3502456578 127371.26416317394 135102.36872193287 81014.90999758522 105755.08745965452 120935.62180343787 0.9371639569129266 1.1532807755316141 1.2684617226770358 1.2449500656001258 1.316711717118993 1.0532154402794258 1.117142879056105 0.6699011324327783 0.8744742523550508 1.0 16.883879730022276 1.8710412364020759 5.944073566200565 0.8216650184119362 1.170002479330212 0.5479890974993962 0.12769386111214143 0.15659847885013328 6.779529036720675 0.057497643426055796 0.03461826326753948 74.30896911545838 -1.8710412364020759 0.3483374609182758 ELHGQNPVVTPCNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELHGQNPVVTPCNK 14 0 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 ; 138.57 1.4625e-05 405190000.0 620010.0 691140.0 638530.0 639160.0 650430.0 792760.0 748830.0 654790.0 942470.0 772370.0 False True 616671.935049587 714144.1770970469 728429.4737977452 720077.5904654489 733258.4050993497 737958.3671563098 712606.2320916048 703653.7547562481 710210.8969509805 723076.6853407753 0.8528444458957471 0.9876465270906658 1.007402794980794 0.99585231423426 1.014081106423416 1.0205810560860789 0.9855195811710677 0.9731384914238059 0.9822068825469994 1.0 19.463789133638183 4.737614008666753 4.830664754695126 0.9960426769267522 0.8451255831594967 0.9072282385136625 0.013784875586256257 0.054984824418893505 3.7546618166536003 0.003871715483382022 0.027915328999885306 54653.000318780745 -4.737614008666753 -0.15091709376725548 ELHINLIPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELHINLIPNK 10 0 P07900;P07900-2;G3V2J8;Q14568 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 ; 128.81 0.00031972 4929600000.0 14025100.0 13940200.0 13927800.0 10646300.0 8076200.0 11448200.0 12878000.0 10806400.0 19152500.0 12552700.0 False True 13949590.419935085 14404191.12997114 15888713.177392198 11994120.488410274 9104656.198612249 10656812.880164074 12255041.9412626 11612828.44178733 14432623.00535152 11751575.939092835 1.1870399759346597 1.2257242096401815 1.3520495684784495 1.0206393211067621 0.7747604445395844 0.9068411705287187 1.042842424265407 0.9881932859027063 1.2281436192179045 1.0 23.486350905857744 3.6441168766829284 6.215188335976253 0.9826636180311303 1.25093375277279 0.5250393096849209 0.11345118883470523 0.18349773641024286 9.98507177258307 0.03153990966421945 0.04922456515747221 4406.73440929011 -3.6441168766829284 0.2682701347416596 ELHINLIPNKQDR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELHINLIPNKQDR 13 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;; 157.09 2.6554e-05 60260290000.0 29011450.0 33650010.0 31923990.0 31763570.0 29559020.0 35632150.0 35096080.0 29639700.0 43720310.0 37817370.0 False True 28855255.57667514 34770030.240989365 36418610.303704634 35784834.705207795 33323185.98696209 33168983.339558855 33398348.530354723 31851564.92134694 32946025.422639288 35403833.06952062 0.8150319633474039 0.9820979037132309 1.0286629199779398 1.0107615928179026 0.9412310221191904 0.9368754867425425 0.9433540279317261 0.8996643063704916 0.9305779223945874 1.0 25.077402229350945 3.021611493245077 24.700857516109217 0.9336856622214124 0.9670260421604461 0.003081275584757903 0.05891486949427372 636.8714679316603 727906.7444636326 0.017286512691394616 0.02065986288702853 1051.021241228007 -3.021611493245077 0.033340379939033715 ELHIQGNR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELHIQGNR 8 0 Q15404;Q15404-2 Q15404 RSU1 Ras suppressor protein 1 0 ;; 143.89 0.00059424 1177800000.0 599340.0 713850.0 665700.0 679690.0 665620.0 650440.0 694150.0 602710.0 775130.0 703830.0 False True 596113.2200329333 737610.0657185625 759424.7736318716 765738.684309814 750382.7615611661 605476.6137710663 660571.3125894893 647687.2806993669 584109.5977098616 658910.9668208207 0.9046946401713721 1.1194381378677867 1.1525453541864994 1.1621276968638514 1.1388226928164327 0.9189050482684029 1.002519833258626 0.9829663085202438 0.8864772740513513 1.0 19.32972401341259 2.7407820091669204 24.992558451700305 0.9629889382273918 1.1037220442942677 0.4460366981832281 0.07616753299154642 186.30761808302577 2096131.3314565492 0.024087704703892685 0.02444559336644525 550.531292020184 -2.7407820091669204 0.14073310606687583 ELHSEFSEVMNEIWASDQIR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELHSEFSEVMNEIWASDQIR 20 0 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21;A0A2R8Y688 H0YFD6 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase 0 ;;; 242.59 8.5345e-30 453741000.0 176934.0 238272.0 255709.0 212265.0 273599.0 410339.0 215694.0 167942.0 249303.0 281934.0 False True 175981.40700321537 246202.73948153437 291710.6045375277 239137.72723597914 308440.2109016761 381973.23076410685 205260.0571889031 180474.68483219642 187865.61613904967 263940.7307441588 0.6667459262806863 0.9327955514383338 1.105212536598933 0.9060281320042963 1.1685964876737847 1.4471932001065744 0.7776748083184795 0.683769739984288 0.7117719785399483 1.0 18.00985447575792 2.042841607248826 24.999974689987678 0.7552117154608083 1.0423841593888434 0.24626129934908014 0.2055155221921493 172.07855049064952 100414.73219271097 0.07921527792356196 0.05850431819908469 110.36760217315913 -2.042841607248826 0.2871724439280351 ELHSWEPEPDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELHSWEPEPDVR 12 0 Q9BTY7 Q9BTY7 HGH1 Protein HGH1 homolog 0 ; 100.04 0.0017211 855250000.0 713290.0 841440.0 659850.0 795690.0 763060.0 645460.0 639660.0 622020.0 705110.0 775870.0 False True 709449.7258939687 869446.8217387786 752751.1444809842 896424.272416066 860231.1679890382 600840.8694494076 608717.2020615028 668438.2909535593 531345.0884899312 726353.3123442744 0.9767281484602169 1.1970026252550237 1.0363429638002364 1.2341435733567385 1.184315061788152 0.827201940485711 0.8380456063412088 0.9202660462801543 0.7315242864041434 1.0 19.47031194824673 2.7360791923678653 24.9981437311847 0.8616026127042443 1.1307270196978731 0.6517319368089916 0.0958316641818927 128.22792087146414 1291774.1682349609 0.02883749618104745 0.02838480946825544 544.6019504109371 -2.7360791923678653 0.26912440699362883 ELHWHPQCPGLLVSTALSGFTIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELHWHPQCPGLLVSTALSGFTIFR 24 0 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 0 124.81 5.9751e-05 98413000.0 46053.0 66184.0 57822.0 66679.0 63242.0 62928.0 64475.0 31444.0 71255.0 45182.0 False True 45805.05576496934 68386.89443092715 65962.83500216629 75120.55456324811 71295.49383529834 58577.9354765784 61356.09793158153 33790.51094939671 53695.1600180823 42298.44607774368 1.0829016196193253 1.6167708455585679 1.5594623708144726 1.7759648764679927 1.6855345868795908 1.3848720439732785 1.4505520561868932 0.7988593927845585 1.269435759398624 1.0 15.368317043435765 1.8724992174302557 5.77421048472224 1.0155704986665797 1.5333044613124727 0.5369333184652045 0.20673228989169537 0.1668871054173115 6.99137149390825 0.09210698781466164 0.05521895496678507 74.55885285256784 -1.8724992174302557 0.517733962645893 ELHYLPFPS(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 4 ELHYLPFPSP 10 0 Q8N565 Q8N565 MREG Melanoregulin 1 ELHYLPFPS(1)P;ELHYLPFPS(1)P;ELHYLPFPS(1)P;ELHYLPFPS(1)P 92.538 0.009859 225796000.0 234570.0 335347.0 375302.0 314085.0 278418.0 313816.0 299458.0 253028.0 413356.0 290172.0 True False 233307.10118317706 346508.8221734581 428141.25941653765 353848.12879613903 313872.8819872247 292122.6385634043 284972.0724993489 271910.23421014997 311489.9524866245 271652.97453125234 0.858842431546194 1.275556885660363 1.5760595301977158 1.302574099940255 1.1554185354635795 1.075352254351248 1.0490298256114412 1.0009470158732534 1.146646573718224 1.0 18.05140531867775 2.9630388690319713 2.8088557984494504 1.0492460667736085 1.2762129144106236 0.23284690005941222 0.16745271881528906 0.376998376609487 5.950846244952777 0.05570085868658032 0.06315041376782432 918.4147902436046 -2.9630388690319713 0.22696684763701502 ELIDWLIEHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELIDWLIEHK 10 0 Q8TB45 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 0 ; 140.17 3.9767e-05 628120000.0 1447620.0 1532150.0 1330490.0 1388480.0 1411210.0 1845530.0 1759480.0 1592780.0 2156490.0 1700370.0 False True 1439826.174765701 1583146.6865457671 1517811.4271736075 1564261.4256359395 1590919.2286030063 1717952.855010325 1674367.23053368 1711641.3315729573 1625051.9349855375 1591850.9308400012 0.9044981203145206 0.9945319978613569 0.9534884189015589 0.9826682859119835 0.9994147050964733 1.079217168974347 1.0518367003436282 1.0752522729435126 1.0208568550624377 1.0 20.60227381010065 3.100660995113641 2.0665841921550627 1.0524537393576692 0.9573354681542445 0.6247526467864706 0.03141102911573058 0.18507054640090925 1.6139880723077642 0.009658344200187918 0.012113057897414075 1260.8429519931042 -3.100660995113641 -0.09511827120342464 ELIFEETAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELIFEETAR 9 0 P28482;P28482-2 P28482 MAPK1 Mitogen-activated protein kinase 1 0 ; 141.2 0.0002496 212380000.0 164282.0 208660.0 172161.0 175674.0 170341.0 181714.0 176594.0 162942.0 191608.0 190941.0 False True 163397.52396544587 215605.12196236663 196399.77234976235 197914.31038773878 192032.9166597917 169152.53888874536 168051.4735654083 175101.55944271083 144388.7758156581 178754.98190718566 0.9140865458523904 1.2061488841430699 1.098709363254213 1.107182067185692 1.0742800822161158 0.9462815362347431 0.9401219019040548 0.9795618425540062 0.8077468626336165 1.0 17.44762392484607 2.752089116554389 3.838170095182094 0.9362419460553659 1.0916750456303586 0.4378677411011843 0.08210695937983288 0.2017977296883396 6.761090137601668 0.025316292471892484 0.025598960883082996 565.0529108982439 -2.752089116554389 0.15543309957499263 ELIIGDR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELIIGDR 7 0 P25705;P25705-2;P25705-3;K7EK77;K7ENJ4 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial 0 ;;;;; 138.9 0.006377300000000001 3032820000.0 2320620.0 2741330.0 2681650.0 2526040.0 2961860.0 4517800.0 2637180.0 2305530.0 3335060.0 3017740.0 False True 2308126.0397651223 2832573.51188102 3059203.0106803523 2845836.4049992845 3339035.314680381 4205495.119757276 2509609.528394077 2477580.3558441205 2513179.1505144294 2825145.249582803 0.8169937599158733 1.0026293381904219 1.0828480451163045 1.0073239262369031 1.1818986351846745 1.4885943016127448 0.8883116819443807 0.8769745046595363 0.889575200031063 1.0 21.42989361223815 ELIKPPTILR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELIKPPTILR 10 1 Q9Y2T2;H0YBA0;E7ER80;E5RJ52;P53677-2;P53677 Q9Y2T2 AP3M1;AP3M2 AP-3 complex subunit mu-1;AP-3 complex subunit mu-2 0 93.839 0.006296100000000001 0.0 385980.0 419010.0 349110.0 319970.0 312090.0 393570.0 388380.0 312910.0 462900.0 382780.0 False True 383901.9265664098 432956.4945531066 398261.65348148247 360478.1691927371 351832.8115976447 366363.4322641262 369592.57564432116 336260.93312478485 348824.49754221184 358350.65268555406 1.071302434331762 1.2081922868242068 1.1113741540494684 1.0059369684169375 0.9818115551372285 1.022360164600016 1.0313712919859859 0.9383572503769024 0.9734166658496329 1.0 18.451012456621683 3.7690439948793037 3.4319805490160435 0.9893491918013171 1.1435644069577038 0.7203210483293734 0.0393438299226048 0.11577416195615038 2.856975464432947 0.010484266856285703 0.019350844790829484 5875.488693632381 -3.7690439948793037 0.1542152151563867 ELILGSETPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 ELILGSET(0.006)PS(0.081)S(0.913)PR;ELILGS(0.001)ET(0.004)PS(0.253)S(0.741)PR;ELILGSET(0.002)PS(0.339)S(0.659)PR 144.88 4.356e-05 347105000.0 740280.0 741450.0 694760.0 668070.0 633030.0 768870.0 771080.0 719350.0 1037300.0 746780.0 True False 736294.4147328399 766128.7150340095 792576.1690378237 752647.5935012399 713642.6182372292 715719.8266252985 733779.9145883492 773031.5497852867 781671.3141078769 699119.8610494756 1.053173362329544 1.0958474472230617 1.13367708914471 1.0765644568749795 1.0207729146271898 1.023744090964465 1.0495766970299543 1.1057210542193143 1.1180791129785386 1.0 19.415180295012323 -2.5905523492004905 1.8992426813309193 5.773473871090832e-05 1.0755761817709317 0.275872772044798 0.03656592269339293 591608.0806922695 43834.81175545916 2548976.7251427956 0.009802097887798253 0.0025671287516358288 2.5905523492004905 1.0755184470322208 ELIPQES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELIPQESPR 9 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 ELIPQES(1)PR 78.324 0.022271 0.0 244130.0 256380.0 228380.0 229240.0 174100.0 237200.0 223190.0 189010.0 333740.0 269390.0 True False 242815.63120539283 264913.4533150172 260533.91888545468 258261.7604954935 196270.60302845313 220802.92230873983 212393.44703140235 203114.8859733327 251494.24888688224 252197.2995636177 0.9628002822613161 1.0504214508775571 1.0330559420591021 1.0240464943215857 0.7782422863689036 0.8755166002601922 0.8421717734444865 0.8053808915669861 0.9972122989502585 1.0 17.94419330233516 3.2598552451461478 24.91552548636476 0.8658090080534765 1.0210322187826852 0.44593293303548476 0.07187130532911527 176.10448527186125 206047.5292900371 0.01900717750003529 0.025711088540756214 1819.094434515358 -3.2598552451461478 0.15522321072920875 ELISDLEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELISDLEHR 9 0 A0A2U3TZJ3;H7C134;Q9C035-6;Q9C035-5;Q9C035-4;Q9C035-3;Q9C035-2;Q9C035 A0A2U3TZJ3 TRIM5 Tripartite motif-containing protein 5 0 103.7 0.0042994 0.0 38607.0 46842.0 44391.0 41712.0 37551.0 43879.0 41852.0 36582.0 44194.0 37578.0 False True 38399.14420164095 48401.10765341304 50640.86694651109 46992.73492317229 42332.897267785425 40845.748010055686 39827.45886983402 39311.934599632055 33302.980869260115 35179.73986785561 1.0915130227192773 1.3758233527371257 1.4394895225698527 1.3357897215752421 1.2033317308996303 1.1610588413525256 1.1321135124772517 1.1174595021821667 0.9466522775425543 1.0 15.10245719457245 2.2000446845310666 0.789708443135024 0.9927517393941785 1.3204806109539315 0.6199583661222083 0.09384600143150146 0.4380466020926643 0.5194886758278006 0.0791031152798806 0.04660706958367191 158.5056270408256 -2.2000446845310666 0.32772887155975305 ELISDNQYR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELISDNQYR 9 0 P25205;P25205-2 P25205 MCM3 DNA replication licensing factor MCM3 0 ;;; 136.21 0.0004633999999999999 1018710000.0 937240.0 1130050.0 972400.0 1034960.0 1016830.0 1208960.0 1168070.0 1024080.0 1180450.0 1153550.0 False True 932194.0039771544 1167663.0311203504 1109305.467747683 1165985.8298831612 1146317.2732764028 1125387.4407857256 1111565.9916392777 1100502.0497728712 889543.9147196021 1079929.4513961577 0.8631989828335476 1.0812401028703946 1.0272017920370142 1.0796870373113243 1.061474221111775 1.0420934805794941 1.029295006449004 1.0190499465961567 0.8237055796279833 1.0 20.042505637782057 1.3713430685412085 8.600913143210231 0.9123303615926254 1.0313247336512037 0.29189714642392617 0.0704962392614111 0.27498053370167963 20.080791973116284 0.04369063995272401 0.015980780659727852 23.514896336859742 -1.3713430685412085 0.11899437205857832 ELISNASDALDK ddPTM_BT-474_Trastuzumab_2h_R1 5 ELISNASDALDK 12 0 P08238;P14625;Q96GW1;A0A1W2PRR1;F8W026 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin 0 ;;;; 303.33 2.4691999999999996e-36 2070398000.0 2693745.0 2435607.0 2164680.0 2034416.0 2189055.0 2766837.0 2769253.0 2577286.0 3576316.0 2630546.0 False True 2679242.176223207 2516674.7066394747 2469448.1282641445 2291972.857006629 2467818.178704481 2575572.0706237233 2635293.652816222 2769616.168513132 2694980.8419792047 2462662.302156263 1.0879454214560031 1.02193252580182 1.0027554838119461 0.9306890575292515 1.0020936189845047 1.0458486607638402 1.0700994815687097 1.1246431011219464 1.0943363365815637 1.0 21.231787378075875 2.41478286987744 2.561330611317258 1.087621174765665 1.0056997498145501 0.26686055214479487 0.046910904605335486 0.3045773620991597 4.08401981876016 0.01883005951369399 0.015246759887202845 259.885991078757 -2.41478286987744 -0.08192142495111487 ELISNASDALDKIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELISNASDALDKIR 14 1 P08238;P14625;Q96GW1;A0A1W2PRR1;F8W026 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin 0 ; 205.28 1.1363e-08 9337600000.0 2596400.0 4075400.0 3851300.0 4582600.0 4187700.0 4279600.0 5366600.0 4182300.0 7014600.0 4930700.0 False True 2582421.2708871593 4211047.2253686795 4393529.563900304 5162756.690135434 4720978.772557454 3983761.3250947916 5106997.055597134 4494404.463289077 5285945.820824366 4616018.504615346 0.559447772643267 0.9122682721393438 0.9518006826678478 1.1184436728261444 1.0227382684530322 0.8630297562957364 1.1063640777199832 0.973653909488302 1.145130985835345 1.0 22.138217576770153 4.91815624851797 1.5471795287518562 1.0244018324585553 0.2105247793324932 0.7568343333915545 0.07927313579860902 0.7928888874278006 1.2675537017006906 0.020194576637127835 1.1129527270802146 82824.0090615299 -4.91815624851797 -0.8138770531260622 ELISNSSDALDK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELISNSSDALDK 12 0 P07900;P07900-2;G3V2J8;Q14568 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 ;; 224.42 4.6771e-11 968080000.0 1097040.0 1008440.0 879850.0 865170.0 863470.0 1120070.0 1094090.0 1008200.0 1490450.0 1155970.0 False True 1091133.6585326034 1042005.3157851476 1003725.2322067041 974700.4332921224 973427.7863123409 1042642.1972611737 1041164.6868703228 1083437.0035358665 1123148.5685067833 1082195.0049242927 1.0082597439164267 0.962862802954855 0.9274901728796299 0.9006698689764417 0.8994938822328413 0.9634513119325607 0.9620860215882809 1.001147666183934 1.0378430536050716 1.0 20.045529056740744 1.8144522815314679 1.798485942101916 1.019676353633834 0.9396307241029669 0.4997540733153093 0.031267349310608275 0.29271489818725666 1.820720691799462 0.023367838021638318 0.010059785875043761 65.23073642446417 -1.8144522815314679 -0.08004562953086714 ELISNSSDALDKIR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELISNSSDALDKIR 14 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;; 199.38 1.8897e-08 3508210000.0 1511630.0 2319620.0 2411220.0 2513660.0 2283200.0 2161790.0 3080850.0 2076320.0 3728390.0 2573770.0 False True 1503491.552037881 2396827.1494601006 2750698.8173000515 2831889.098268633 2573951.986413346 2012350.5456062837 2931817.5155100906 2231265.5417393246 2809578.242366402 2409509.7950846446 0.6239823366167575 0.9947364208062501 1.1416010106750452 1.175296777811667 1.0682471561909235 0.8351701037744033 1.2167692870520568 0.9260246819876247 1.1660372778304906 1.0 21.2003082352252 4.723241743556378 3.645338137133127 1.060677368431641 0.5822247493131983 0.575287634862143 0.11322830035671227 0.17583123524098346 4.334433381949914 0.02632688116583109 0.22358553983833435 52873.94848382609 -4.723241743556378 -0.4784526191184427 ELKDDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELKDDLK 7 1 P12429;D6RA82;D6RFG5;D6RCA8;D6RAZ8 P12429 ANXA3 Annexin A3;Annexin 0 ;;; 134.91 0.0028533 3952380000.0 5282110.0 3804460.0 2926980.0 2788930.0 2734470.0 4784310.0 4394300.0 4005350.0 7425750.0 4929210.0 False True 5253671.706657595 3931089.151255366 3339073.342233767 3142008.2520445627 3082688.546026505 4453581.910754338 4181730.9211438303 4304249.555755191 5595773.412452103 4614623.597691004 1.1384832577214636 0.8518764462658114 0.723585200731111 0.680880723103118 0.6680260005537557 0.9651018802449574 0.9061911188674677 0.9327412008010547 1.2126175177650527 1.0 22.137781545279545 1.7050697821640513 1.3929840415853927 1.0910651509031446 0.8177250069452728 0.32197635388740053 0.14370628557648027 0.4782990705361308 1.7812595058799943 0.12169394359041341 0.04620099525925703 50.70721777677195 -1.7050697821640513 -0.27334014395787176 ELKDEVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELKDEVTR 8 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C0K6 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A;Kinesin-like protein 0 77.66199999999998 0.029761000000000006 226870000.0 373000.0 392750.0 336460.0 352350.0 339970.0 367220.0 388370.0 352030.0 498960.0 383270.0 False True 370991.8094441962 405822.44632761116 383830.643437254 396957.47387274075 383263.16433993843 341834.9457428987 369583.05938252504 378300.2661721192 375997.99372145603 358809.38046604436 1.0339523703709432 1.1310251861322669 1.069734138329133 1.1063185509730744 1.0681525768421438 0.9526923329008339 1.0300261907938058 1.0543210037618271 1.0479045816279553 1.0 18.45285808201545 2.9850188370367428 24.83647613905694 1.0228259492469813 1.0873950814588305 0.45706444756871545 0.03541494579018946 600.0244835712826 994751.4811620016 0.010637337379518205 0.011656983765854986 966.0927812734384 -2.9850188370367428 0.06456913221184912 ELKIDIIPNPQER ddPTM_BT-474_Trastuzumab_2h_R1 4 ELKIDIIPNPQER 13 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ;;; 108.89 0.0010765 2119170000.0 1033350.0 1800550.0 1745830.0 2049630.0 2062620.0 1896020.0 2342710.0 1773290.0 3189620.0 2348940.0 False True 1027786.5584159793 1860480.2182945416 1991627.68897361 2309112.947846701 2325282.43089344 1764952.600151001 2229384.1672787154 1905621.9043841637 2403580.889718276 2199028.6381712873 0.46738207069039667 0.846046379751433 0.9056851986383625 1.0500604256645607 1.057413437247068 0.8026055547956557 1.0138040626577158 0.8665743916681682 1.0930193668223869 1.0 21.068434962002122 4.846812536311132 1.717894801314231 0.9676648609316014 0.19357250472021548 0.7600692486499322 0.08584661441990206 0.5914778169890754 1.3903146136395679 0.02181395584595685 0.8165098005638699 70276.89034364969 -4.846812536311132 -0.774092356211386 down ELKPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELKPAR 6 1 P36542-2;P36542 P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial 0 73.039 0.07662000000000001 135630000.0 329560.0 339120.0 358490.0 301550.0 409760.0 597940.0 349940.0 269720.0 477530.0 386170.0 False True 327785.68557755806 350407.4041976306 408962.27594906115 339726.19908138184 461940.5071621993 556605.815199359 333012.06529938144 289847.87601040845 359849.13007416774 361524.2999832295 0.9066767727446357 0.9692499348284068 1.1312165626709803 0.9397050187142086 1.2777578358733506 1.5396083063439414 0.9211332829213121 0.801738295389422 0.9953663698148659 1.0 18.46373309612793 2.0381306587762293 24.99996479452052 0.898111808076927 1.1279714372221556 0.21486356187391853 0.1818315164572591 230.48748383655354 151115.75441783093 0.07278269756844014 0.053753489851159075 109.1768748893628 -2.0381306587762293 0.22985962914522862 ELKTDS(ph)SPNQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELKTDSSPNQAR 12 1 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 ELKT(0.002)DS(0.834)S(0.163)PNQAR 92.575 0.0031112 0.0 104230.0 138750.0 111700.0 128690.0 127070.0 147030.0 146700.0 122100.0 237950.0 186250.0 True False 103668.83726104174 143368.2098738537 127426.38908619521 144982.1408051172 143251.6112971023 136866.16217139133 139603.56055157824 131211.722011237 179310.41086664342 174363.36554335282 0.5945562987843686 0.8222381428982417 0.7308094145183988 0.8314942783612971 0.8215694326081642 0.7849479261018372 0.8006473155444337 0.7525188654299815 1.0283720453999874 1.0 17.411737430258135 -4.999999981714876 0.03381077285930815 2.2614787551911713 1.6792165386387545e-13 0.5525196310758032 0.07937226136696965 933.1933027785062 2.3692865628361655 130.51916867213004 47.228905800837936 1.000000042103054e-05 4.999999981714876 -2.2614787551910034 ELLAKPIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_BT-474_Trastuzumab_2h_R1 5 ELLAKPIGPDDAIDALSSDFTCGSPTAAGK 30 1 P20810-5;E9PCH5;P20810-2;P20810-3;F8W7E0 P20810-5 CAST Calpastatin 1 ELLAKPIGPDDAIDALSSDFTCGS(0.972)PT(0.028)AAGK;ELLAKPIGPDDAIDALSSDFT(0.001)CGS(0.999)PTAAGK;ELLAKPIGPDDAIDALSSDFT(0.003)CGS(0.797)PT(0.2)AAGK;ELLAKPIGPDDAIDALSSDFT(0.037)CGS(0.823)PT(0.14)AAGK;ELLAKPIGPDDAIDALSSDFTCGS(0.992)PT(0.008)AAGK 302.51 1.4035999999999993e-81 5483474000.0 3478960.0 3023579.0 2530418.0 2575790.0 2477682.0 3521352.0 3359261.0 3097108.0 5411365.0 3749768.0 True False 3460229.6659087893 3124216.999222895 2886678.859612462 2901884.749898304 2793200.1163282217 3277929.22461099 3196760.711806788 3328229.9257557616 4077806.6043260084 3510454.5959021044 0.9856927561313726 0.8899750484936965 0.8223091285619244 0.8266407300313161 0.7956804567672908 0.9337620342497662 0.9106400964531762 0.9480908625455344 1.1616178169876337 1.0 21.74322643768496 1.4844772555535075 3.073110905670013 1.0795051142505143 0.8757708041264403 0.5836989045318846 0.06586982117036175 0.15758822953208618 2.969097223277294 0.04923760038468656 0.01750359991479482 30.512462280688684 -1.4844772555535075 -0.20373431012407406 ELLAKPIGPDDAIDALSSDFTCGS(ph)PTAAGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLAKPIGPDDAIDALSSDFTCGSPTAAGKK 31 2 P20810-5;E9PCH5;P20810-2;P20810-3;F8W7E0 P20810-5 CAST Calpastatin 1 ELLAKPIGPDDAIDALSSDFT(0.024)CGS(0.953)PT(0.024)AAGKK 164.92 7.7388e-13 251590000.0 115380.0 99909.0 94323.0 93011.0 102560.0 124440.0 127190.0 147250.0 219450.0 146910.0 True False 114758.80689992309 103234.41066873402 107602.8585297867 104786.1830633672 115620.40807925416 115837.75570025125 121037.33378701603 158238.54272034933 165369.48797934424 137534.07802402123 0.8344027062142352 0.7506096827195327 0.7823723405554306 0.7618925037986993 0.8406673439804518 0.842247662284975 0.8800534058611719 1.1505406150518704 1.2023891849586643 1.0 17.06942960656381 1.8580140095560214 2.977016395553291 1.1352954475111132 0.8003646203965145 0.8571491815767591 0.057418202788904714 0.08280897477495837 1.2957785740239867 0.030559098302619703 0.015756050206348016 72.1130741183667 -1.8580140095560214 -0.33493082711459876 ELLDLAMQNAWFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLDLAMQNAWFR 13 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 202.16 2.2355e-07 82082000.0 72044.0 97375.0 108000.0 92411.0 85764.0 90963.0 87598.0 78811.0 125520.0 90876.0 False True 71656.12310884097 100616.06801056946 123205.46124717168 104110.22312488682 96685.53703694583 84674.9419138699 83360.55008314353 84692.2770141491 94587.27788182854 85076.21587714207 0.8422579961985973 1.1826580081543399 1.4481774956362867 1.2237288888733795 1.1364578929623375 0.9952833590547605 0.9798337787322827 0.9954871187083896 1.1117946056559607 1.0 16.376468244339655 2.882270220832716 3.684499361088754 1.0116571689465808 1.1933322647728146 0.21634619769509367 0.14188348638335166 0.35313798416433034 8.622587314404631 0.04663772533908789 0.05027080236268997 762.5533280559853 -2.882270220832716 0.18167509582623387 ELLDMMIAEEESLKER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLDMMIAEEESLKER 16 1 O43663-2;O43663-4;O43663;H0YLA0 O43663-2 PRC1 Protein regulator of cytokinesis 1 0 101.42 0.0015692 13997000.0 87206.0 83754.0 72351.0 71815.0 69235.0 105260.0 108590.0 92543.0 134090.0 97271.0 False True 86736.4925854974 86541.70125963789 82537.39191383454 80906.77163664225 78051.66686200435 97983.62395538772 103337.086845916 99449.02858383217 101045.31621394506 91063.08150210709 0.9524880023249644 0.9503489211227211 0.9063760038904979 0.8884695125847478 0.8571164688754611 1.0759972355330465 1.1347857456759236 1.0920894279371718 1.1096188987587357 1.0 16.474578659383045 2.6777739974652928 6.751984388759532 1.0937714317634786 0.9118082987351815 0.805126844612274 0.04203593269044982 0.09851766281909387 9.137949564611354 0.013583160075645357 0.012832475035390008 476.1831213510365 -2.6777739974652928 -0.18196313302829703 ELLDTS(ph)FEDLSKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLDTSFEDLSKPK 14 1 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 1 ELLDT(0.117)S(0.883)FEDLSKPK;ELLDT(0.26)S(0.74)FEDLSKPK 218.43 3.2622e-12 416130000.0 683030.0 397740.0 386620.0 351790.0 320067.0 637600.0 549770.0 537120.0 1073010.0 668050.0 True False 679352.6423717677 410978.53546109283 441052.73543871794 396326.57793015905 360825.6352642611 593524.2127489574 523175.52477465005 577202.6218400949 808581.0630973626 625414.4770536205 1.086243870740336 0.6571298723324199 0.7052167028760734 0.6337022766042872 0.5769384120497828 0.9490093922115447 0.8365260862514302 0.9229121534879466 1.2928723155029207 1.0 19.254453089497222 1.6750900392756871 1.4641385293298872 1.1336355278182908 0.7438112764399797 0.43666197367198956 0.16214120090179748 0.3434386128726092 1.431432361861459 0.13036959416058558 0.04853143879647913 47.32493643138106 -1.6750900392756871 -0.3898242513783111 ELLELASR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLELASR 8 0 Q00341;A0A024R4E5;Q00341-2;H0Y394 Q00341 HDLBP Vigilin 0 121.58 0.0033202 223100000.0 74276.0 91917.0 88340.0 91832.0 97522.0 90779.0 78696.0 75899.0 119490.0 82562.0 False True 73876.10626883947 94976.40178000025 100777.50413495504 103457.92178425279 109940.84864181955 84503.66140078034 74889.17383208593 81562.96878731264 90043.29058396816 77292.82247511555 0.9557951683369295 1.228786823130672 1.3038403943315746 1.3385191337470062 1.4223940221255997 1.0932924778104245 0.9689020459331333 1.0552463498609055 1.1649631582927074 1.0 16.238046829141602 2.5012483512568022 22.70887171253601 1.0470059878115474 1.2567420583418458 0.3876557110455745 0.12246976298994804 245.41436276232992 230988.50598709687 0.04120754884598738 0.038598597028543104 317.13804982283773 -2.5012483512568022 0.2097360705302984 ELLFHPALFEVPSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLFHPALFEVPSLK 15 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 0 ; 124.09 9.8709e-05 508660000.0 960650.0 947980.0 815200.0 848910.0 794700.0 1073960.0 1058970.0 860800.0 1251610.0 1019060.0 False True 955477.9671382483 979532.9412339894 929973.0741545769 956381.9189592962 895900.3344440658 999719.6730299086 1007743.5754417514 925037.2670538329 943167.4862147508 954022.7183388396 1.0015253817036376 1.0267396387997643 0.9747913296801376 1.0024728977361927 0.939076520110572 1.0478992311321866 1.0563098300179385 0.9696176508925525 0.9886216209368787 1.0 19.863664096269833 2.704853284842239 24.9995665427937 1.0108807571397926 0.9909900085767225 0.11692169290133192 0.03198276017189807 1799.5051793836242 1334630.2684606854 0.010942974523002611 0.010317710664583105 506.81946350407577 -2.704853284842239 -0.01989074856307016 ELLGPDFGYVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLGPDFGYVTR 12 0 Q9Y2J8;Q9Y2J8-2 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 ; 186.87 2.607e-05 146738000.0 197651.0 262980.0 217120.0 236630.0 212800.0 256250.0 217680.0 204523.0 225050.0 231460.0 False True 196586.86897709043 271733.13032523304 247688.60875912887 266587.3337377793 239898.81863558196 238536.04064761626 207149.98678164676 219785.5448067504 169589.44301549945 216688.0246371243 0.907234579789556 1.2540292929444985 1.1430655163058483 1.2302818034555378 1.1071161825270572 1.100827057919235 0.9559826258444583 1.0142948378195489 0.7826433569621658 1.0 17.725259898869645 2.1777761947904706 1.4209756747030866 0.9214937790926172 1.1438304996606543 0.42510424465521046 0.10536511906722747 0.37977727507970466 1.4786557028399299 0.06169171244023987 0.034205403076888095 150.58308655720845 -2.1777761947904706 0.2223367205680371 ELLHSQNTWLNTELK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLHSQNTWLNTELK 15 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ; 138.81 8.2806e-06 841510000.0 500480.0 467280.0 368400.0 373560.0 374450.0 502890.0 463430.0 425870.0 608690.0 458730.0 False True 497785.47128855484 482833.13232327485 420267.51780979673 420852.6576980298 422133.9879609667 468126.39797572634 441012.1204254803 457650.5819240422 458686.50552812446 429453.45866148814 1.1591138952286997 1.12429676041767 0.9786101598056237 0.9799726820450693 0.9829563121383755 1.0900515260367754 1.0269148181971055 1.0656581585125389 1.0680703491310777 1.0 18.712142264481574 4.372534812695206 5.743309063743386 1.0280638305987948 1.1504949404112899 0.6060501919256627 0.03821506500501131 0.13654000741601383 6.289606872206223 0.010150627224100827 0.028877938215711194 23579.511998513342 -4.372534812695206 0.12243110981249505 ELLHSVHPES(ph)PNLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELLHSVHPESPNLK 14 0 Q9Y217 Q9Y217 MTMR6 Myotubularin-related protein 6 1 ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK 254.23 5.0169999999999985e-24 2430030000.0 1165020.0 1118860.0 1082160.0 1075320.0 1053850.0 1357180.0 1178920.0 629640.0 1624430.0 1169480.0 True False 1158747.6617658893 1156100.5787348486 1234518.7216966609 1211455.401744958 1188051.5508416742 1263361.3410580773 1121891.1356882514 676626.9340471367 1224110.9927468044 1094842.7851577997 1.0583689982474322 1.0559512236893627 1.1275762496975579 1.1065108325761592 1.0851343836279108 1.1539203237074709 1.0247052370414562 0.6180128720030013 1.1180701095549286 1.0 20.062292289052795 1.9849283770466626 24.35216980321857 0.8575282246864566 1.0965077010952675 0.28250451852904157 0.12374900086709026 431.4789311550651 697167.1789930451 0.04729024537227949 0.03168571657117349 96.5891573000972 -1.9849283770466626 0.2389794764088109 ELLIFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLIFNK 7 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 123.96 0.009755 195271000.0 668260.0 818020.0 780810.0 725010.0 641320.0 808860.0 819120.0 682950.0 1116040.0 845410.0 False True 664662.1624106652 845247.3011964669 890741.2610778157 816796.1916630499 722988.3005985505 752945.4120516343 779496.0362577286 733915.1969498303 841006.8961698218 791455.2100080854 0.8397975703563505 1.0679660586071977 1.1254474666591885 1.0320182132033797 0.9134923763925498 0.9513430482616222 0.984889639237785 0.927298459431877 1.0626083264537867 1.0 19.594148182186988 3.276734176469822 24.97459222755256 0.9666281172265145 1.0277930346976796 0.05582432951527627 0.0785962093035136 356.457382835827 233205.63230980068 0.02164300103636422 0.02930417782637143 1891.18570491152 -3.276734176469822 0.06116491747116504 ELLKPNASVALHK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLKPNASVALHK 13 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 110.98 0.00061007 806640000.0 1227900.0 1215600.0 1121600.0 1004100.0 1120800.0 1336300.0 1286200.0 1322800.0 1567000.0 1403400.0 False True 1221289.1228325146 1256060.5111542821 1279511.5308780358 1131218.9570473072 1263527.2364979335 1243924.726311842 1223981.5922388532 1421514.053042296 1180833.8467242299 1313833.8104888122 0.9295613441232219 0.9560269351623434 0.9738762396455555 0.8610061242269575 0.9617100933243893 0.9467900098027159 0.9316106667885724 1.0819588000353115 0.8987695683405349 1.0 20.325351367094832 ELLLPNWQGSGSHGLTIAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLLPNWQGSGSHGLTIAQR 20 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2;E9PQE3 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 240.71 1.0312999999999997e-29 492060000.0 387050.0 568050.0 589740.0 634850.0 652330.0 661660.0 675930.0 547960.0 521130.0 639930.0 False True 384966.1658052978 586957.2008565239 672770.2658880284 715221.944907363 735400.3588371678 615921.0015801055 643232.683596648 588851.5576844998 392704.49428423657 599089.1195283635 0.6425858077815947 0.9797493924086111 1.1229886238255686 1.1938489977424824 1.2275308211508102 1.028095789930208 1.073684469687977 0.9829114542224981 0.6555026313837841 1.0 19.192411106395845 1.4355280407882314 6.452039569016953 0.8220693514032543 1.0494201745781 0.19007774556616608 0.1700302410314311 0.28097645420575135 24.001450249273102 0.11020042092177482 0.043366153046396995 27.260137418702676 -1.4355280407882314 0.22735082317484567 ELLLTGPGLEER ddPTM_BT-474_Trastuzumab_2h_R1 3 ELLLTGPGLEER 12 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 ;; 162.38 0.00014618 100199000.0 154484.0 183147.0 167474.0 171150.0 174539.0 192372.0 171467.0 161490.0 212084.0 182386.0 False True 153652.27530878587 189242.93718030062 191052.88348989678 192817.5724515951 196765.50707629602 179073.7764349785 163172.48614245016 173541.20382960435 159818.73998000083 170745.96933148926 0.8998881549612606 1.1083303337773147 1.1189305623899286 1.1292657343919823 1.1523874200174644 1.0487730816492744 0.9556447322376564 1.0163707202521914 0.9360030026227201 1.0 17.381491996764144 2.4207523144351395 5.200319239646752 0.9825265973932059 1.0891903426963216 0.3383617385922526 0.06862504490968876 0.22590005656346698 12.762509613651277 0.02420093810557372 0.02027005875335334 263.48282696498916 -2.4207523144351395 0.10666374530311573 ELLNPVVEFVSHPSTTCR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLNPVVEFVSHPSTTCR 18 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 260.53 9.606999999999999e-31 1286410000.0 390490.0 691080.0 671180.0 755600.0 743270.0 767490.0 705210.0 721030.0 658380.0 795770.0 False True 388387.645227518 714082.1800333178 765676.3099988579 851258.8825265876 837921.0287935566 714435.2227771285 671096.2981361854 774836.9199161533 496131.07084001147 744983.2773070259 0.5213374005272523 0.9585210860230182 1.0277765062950588 1.1426550212022584 1.124751459955562 0.9589949795378994 0.9008206205138887 1.0400729030013167 0.6659626946707203 1.0 19.506848516096177 4.737324603278627 4.492595616087841 0.9921950942223688 0.4903120453578637 0.5420431399400476 0.12638387460568407 0.1452952430832007 7.474396520927807 0.030288310320882913 0.23108237412636168 54616.59275531691 -4.737324603278627 -0.5018830488645052 ELLPLIYHHLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLPLIYHHLLR 12 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 0 85.288 0.0067994 288350000.0 169040.0 224520.0 216390.0 202750.0 175280.0 183010.0 211650.0 128630.0 265310.0 181610.0 False True 168129.90742210974 231993.0124747938 246855.83110440246 228418.1292115739 197600.86903404523 170358.9494592013 201411.6809184834 138229.02376990527 199927.9054718604 170019.49431585634 0.9888860574409415 1.3645083077579634 1.4519266281653693 1.3434819938190534 1.162224777983101 1.0019965660097443 1.1846387482150003 0.8130186736887252 1.1759116581092828 1.0 17.37534064868444 2.9759949681762365 3.071207649102496 1.0187852239085966 1.3036023342361371 0.382441012518688 0.14921425567737895 0.2433860809199705 4.667913453342273 0.04714635858943121 0.05367467978391675 946.2261981340454 -2.9759949681762365 0.28481711032754053 ELLQHPFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLQHPFLK 9 0 Q13177;A0A087X294;O75914-2;O75914;O75914-4;O75914-3 Q13177 PAK2;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 3 0 ; 87.32799999999997 0.013535 1269000000.0 2308700.0 2582200.0 2535300.0 2454000.0 2424400.0 2823800.0 2713900.0 2414800.0 3483900.0 2867900.0 False True 2296270.215720684 2668146.9660271355 2892248.202777359 2764676.148385712 2733132.969455377 2628597.3525102045 2582618.2888952177 2595004.6381059373 2625339.526868246 2684868.1666672826 0.8552636752258254 0.9937720589607559 1.0772403050118833 1.0297251025987972 1.017976600634364 0.9790414982546697 0.9619162389269238 0.9665296308857904 0.9778280957932735 1.0 21.356419819559154 -1.712883574772454 7.604107344501354 1.0000847309032508 0.9870787116653484 0.005179889897063861 0.05433976195693542 8.011089176983345e-05 3.024818291879811e-06 0.05399900964560998 0.012644783983489909 0.01936941147585496 1.712883574772454 -0.013006019237902344 ELLS(ph)PLS(ph)EPDDRYPLIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 2 ELLS(1)PLS(1)EPDDRYPLIVK;ELLS(1)PLS(1)EPDDRYPLIVK 132.45 8.4039e-06 44480000.0 175533.0 181987.0 145909.0 172497.0 173774.0 186058.0 185509.0 180988.0 230056.0 194902.0 True False 174587.94983154975 188044.3272815354 166451.7189362369 194335.10251348405 195903.0888608063 173196.24839342127 176535.22095680103 194494.24359844188 173361.78139246293 182463.18749600285 0.9568393067526259 1.0305877577944582 0.9122482250831186 1.0650647134931877 1.0736581529087772 0.9492120069272352 0.9675114382218513 1.0659368953680182 0.9501192200550629 1.0 17.477245899667427 3.7305148232354144 24.99621036121536 1.0135956446103693 0.9729613615685028 0.12438211045580227 0.05171662341304184 1344.7450966240585 4177778.068783551 0.013705008701776092 0.021687882723221266 5376.687843914615 -3.7305148232354144 -0.04063428304186656 ELLS(ph)PLSEPDDRYPLIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 ELLS(0.8)PLS(0.2)EPDDRYPLIVK;ELLS(0.981)PLS(0.019)EPDDRYPLIVK 191.65 1.3016e-14 228280000.0 357450.0 364690.0 323530.0 288750.0 316840.0 367700.0 394840.0 329960.0 420810.0 347670.0 True False 355525.52891642845 376828.4861902393 369080.2118268287 325305.72039379546 357187.6959421891 342281.7644726973 375740.08076472534 354583.2907029307 317107.01406510756 325481.4029447379 1.0923067361141723 1.1577573489021102 1.133951766483854 0.9994602378220291 1.0974135318042562 1.0516169629845544 1.1544133623773294 1.0894118296618436 0.9742707607750719 1.0 18.31221558880813 1.2554190060350805 0.013635200373418569 1.8397660572289092e-05 2.119127169208133 0.29236806398407966 0.05297913394472697 827.791241328082 9.829259107700414 769.9074126746917 755.5080381547708 18.006072979753203 -1.2554190060350805 2.1191087715475607 ELLSAEENKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLSAEENKR 10 1 Q9NWH9;H7BXE3;H0YL55;H0YKU6 Q9NWH9 SLTM SAFB-like transcription modulator 0 144.55 5.1318e-05 639640000.0 441200.0 480870.0 405100.0 441780.0 514990.0 641770.0 579870.0 595780.0 867780.0 664010.0 False True 438824.6282219278 496875.4672579459 462134.5588076783 497709.30270327657 580570.9239151244 597405.9504640817 551819.4727814837 640240.1289095393 653927.246656256 621632.3133124376 0.7059231298379608 0.7993076560166076 0.7434210688713113 0.800649020401106 0.9339458575142064 0.9610278257266535 0.8876943185933364 1.0299337971958824 1.0519518253028566 1.0 19.24570197342688 3.1331503790427226 0.639938866642185 1.024276115226885 0.7121180372940908 0.8602942021144049 0.04366111858286976 0.3055031351951792 0.27167336876427134 0.03064150818767954 0.05121635989842572 1358.7838583752932 -3.1331503790427226 -0.31215807793279426 ELLSNWYHFLVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLSNWYHFLVTR 13 0 J3QLV0;J3QLD4;J3QL54;J3KT10;Q9BW27-2;Q9BW27-3;Q9BW27;J3KTC7 J3QLV0 NUP85 Nuclear pore complex protein Nup85 0 131.53 0.00012932 70270000.0 33576.0 47300.0 50845.0 47180.0 44540.0 44446.0 52351.0 42051.0 54640.0 53807.0 False True 33395.23054664431 48874.35190654619 58003.53404733747 53152.98316252559 50211.90499073696 41373.55263463007 49818.58212975919 45189.05915065134 41174.7041384888 50372.9911935097 0.6629590531631386 0.97024915035904 1.1514808367149523 1.0551881455349048 0.9968021314804612 0.8213439713296367 0.988993922127421 0.8970890566545057 0.817396449226425 1.0 15.620362781617906 2.791592660942801 24.977100534135264 0.9055933120810888 0.9826087019154371 0.0487057912933353 0.1292799064558866 945.7329684251482 445420.31950129307 0.04048058278842447 0.042936126211945765 618.8603533310351 -2.791592660942801 0.0770153898343483 ELLSPLS(ph)EPDDRYPLIVK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 ELLS(0.002)PLS(0.998)EPDDRYPLIVK;ELLS(0.003)PLS(0.997)EPDDRYPLIVK;ELLSPLS(1)EPDDRYPLIVK;ELLSPLS(1)EPDDRYPLIVK 310.25 2.3649999999999996e-61 3078840000.0 1483410.0 1565460.0 1426390.0 1345690.0 1341550.0 1672870.0 1642030.0 1469720.0 1970810.0 1752410.0 True False 1475423.485382345 1617565.389759448 1627213.3135958633 1516054.2160232954 1512388.4405101757 1557228.4344124014 1562598.7357362516 1579397.96948694 1485130.2830010087 1640569.6934863164 0.8993360606625465 0.9859778564615668 0.9918586939991133 0.9241022932720294 0.9218678404915872 0.9491998057718539 0.9524732426426996 0.9627131207883144 0.905252784381876 1.0 20.645765452001836 -1.337175700050003 4.844570111994661 1.0000326850409387 0.9468567847595889 0.235548413654314 0.029958995493557378 1.0343467229175e-05 1.4151883758862083e-06 0.028369581811300622 0.006682665349434221 0.046007040785603574 1.337175700050003 -0.053175900281349775 ELLTEFGYKGEETPVIVGSALCALEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLTEFGYKGEETPVIVGSALCALEGR 27 1 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 138.71 3.1961e-06 63491000.0 43051.0 48399.0 38568.0 30793.0 43092.0 65436.0 41147.0 47623.0 59314.0 52752.0 False True 42819.21819941577 50009.931457186685 43998.03916093444 34691.390642722574 48579.51077370537 60912.56333977531 39156.56241319555 51176.87008469407 44696.85946688003 49385.32219674062 0.8670434107695626 1.0126476700497722 0.8909132755205201 0.7024635883617293 0.983683179795303 1.2334143148264298 0.7928785451111189 1.0362769302347832 0.9050636399377379 1.0 15.59179470191691 3.0392007019038068 24.999902750658702 0.995000716061571 0.8755569058430789 0.18918550537100032 0.12513004607809206 280.35490124616933 178792.10314789598 0.03600550280856682 0.04303475637017933 1094.4620366757974 -3.0392007019038068 -0.11944381021849215 ELLTLDEKDPR ddPTM_BT-474_Trastuzumab_2h_R1 5 ELLTLDEKDPR 11 1 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 RPS9 40S ribosomal protein S9 0 ;;;; 87.184 0.012689 15543370000.0 38521400.0 37268600.0 34398300.0 33580300.0 31689200.0 41231800.0 40500200.0 38491800.0 53622700.0 41503400.0 False True 38314005.0625299 38509062.821655594 39241281.64461657 37831562.5369343 35724631.783396035 38381542.7152171 38541050.60021155 41364253.573399924 40408104.09236717 38854617.47915159 0.986086276182959 0.9911064712532194 1.0099515627884497 0.9736696689198848 0.919443662070923 0.987824490507767 0.9919297396478478 1.0645904208320913 1.0399820333850704 1.0 25.21158272277824 1.900069810961741 5.238088886104625 1.0402835262674959 0.9781052205918096 0.4756128002894152 0.026520708817407836 0.184858879297188 7.538962965004549 0.01255065673596622 0.0074659629576978295 79.44559298193249 -1.900069810961741 -0.062178305675686274 ELLTMQLVDWHQLQADSFIQDER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLTMQLVDWHQLQADSFIQDER 23 0 P52948-6;P52948-5;P52948;P52948-2;H7C3P6;H0YDF4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 161.16 1.8098e-11 34310000.0 26493.0 33803.0 34123.0 31361.0 32640.0 37866.0 32265.0 28102.0 36930.0 32121.0 False True 26350.364631649016 34928.11242065501 38927.22179756705 35331.299384484235 36796.51052756297 35248.41254697618 30704.218685730557 30199.113939064573 27829.096336646966 30071.010279828355 0.8762713452738516 1.1615210827846645 1.2945099428095852 1.1749289117893216 1.223653950603917 1.1721725415597635 1.0210571045006411 1.0042600384238554 0.9254460052283223 1.0 14.876085717737858 2.1484548442205984 3.6764186730270345 0.9839189329105712 1.1624074502481319 0.3718950135694362 0.10379350589809792 0.2504981322907511 6.57420118616923 0.04303031770917422 0.03058588696586706 140.7520873736434 -2.1484548442205984 0.17848851733756066 ELLTTMGDR ddPTM_BT-474_Trastuzumab_2h_R1 8 ELLTTMGDR 9 0 J3QRS3;P19105;O14950;P24844-2;P24844 J3QRS3;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 ;;;;;;; 167.23 0.00013992 2469180000.0 1394463.0 1733099.0 1520462.0 1639961.0 1597773.0 1713107.0 1640137.0 1519263.0 1877356.0 1680041.0 False True 1386955.366147403 1790784.1525345328 1734529.833507383 1847579.8944510107 1801239.9208074682 1594683.9453101105 1560797.3073782136 1632638.1197211968 1414706.769081566 1572819.3450245336 0.8818275096468683 1.1385822270049708 1.1028156787328471 1.1746930124528645 1.1452300141815535 1.0139015331638332 0.9923563773014679 1.0380328324965575 0.8994718774008332 1.0 20.584921540774083 2.5863709499895524 5.542013908516387 0.9927884942344747 1.0966354500070434 0.2704420808663959 0.08200840609523659 0.3156438314320342 13.5562709054156 0.026788641907211794 0.025092023641752382 385.8077523149865 -2.5863709499895524 0.10384695577256875 ELLTTMGDRFT(ph)DEEVDELYR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 1 ELLTTMGDRFT(1)DEEVDELYR;ELLTTMGDRFT(1)DEEVDELYR;ELLTTMGDRFT(1)DEEVDELYR 211.5 4.2948e-22 350059000.0 224422.0 269299.0 251574.0 284827.0 293311.0 320635.0 295646.0 259459.0 306219.0 289750.0 True False 223213.73688762833 278262.4544203165 286993.4324795925 320886.06899602944 330662.41725949827 298470.257143604 281344.47350260324 278821.14808610646 230755.43057437582 271257.90693254455 0.8228837987131425 1.0258224638204327 1.0580094631157093 1.1829556329793043 1.2189964193070553 1.1003191041278164 1.0371844149507758 1.027882103932339 0.8506864672953451 1.0 18.04930566591508 -0.8408319774790911 5.2053119409217254 0.9999999566830282 1.0468279047321976 0.0009410249131757142 0.11860636002169753 5.99669061032282e-08 1.3892161409039492e-08 0.11836197553727137 0.02789815898895316 0.14426733939263403 0.8408319774790911 0.04682794804916934 ELLTTMGDRFTDEEVDELYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 ; 132.13 1.1953e-05 43496000.0 32044.0 45166.0 45086.0 52265.0 44737.0 51956.0 56394.0 39147.0 56398.0 48876.0 False True 31871.478664423106 46669.32300657643 51433.71690546278 58881.743641148816 50433.991773026486 48364.40401126853 53666.00677399933 42068.34792443813 42499.46859448191 45756.69183515115 0.6965424593903626 1.0199453049340463 1.12406983203166 1.2868444216483927 1.102221112372511 1.0569908372203187 1.1728559172796689 0.9193922514328371 0.9288142759007988 1.0 15.481695129971094 -3.246988827359711 9.76329706320099 1.0013882728359167 1.0413385592175 0.0 0.153931673520318 0.0 0.0 0.0 0.03483771993485682 0.0005662538562720876 3.246988827359711 0.039950286381583267 ELLTVGQEHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLTVGQEHWK 11 0 Q9Y5X1 Q9Y5X1 SNX9 Sorting nexin-9 0 113.22 0.0014204 49381000.0 82452.0 99525.0 99984.0 91445.0 99662.0 93406.0 105440.0 95616.0 106280.0 108320.0 False True 82008.08759327835 102837.62946086703 114060.87812349272 103021.92762393299 112353.36495704594 86949.06307407319 100339.46438008452 102751.35144820994 80088.71807903708 101406.92486258238 0.8087030319123512 1.0141085492950646 1.1247839166610942 1.0159259613043106 1.107945686246745 0.8574272732547487 0.989473495188377 1.0132577394241016 0.7897756310781159 1.0 16.629796648708883 2.737560810552116 24.999989392691194 0.9426198372422466 1.0205122118608907 0.1382965253961428 0.10224429758256222 205.5374329699949 5139397.739347392 0.032410484758747735 0.03223110971934699 546.463061086674 -2.737560810552116 0.07789237461864407 ELLVDCYKPTEAFISGLLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELLVDCYKPTEAFISGLLDK 20 1 B5MC51;P53671-3;F5GXC4;F5H2U0;Q96C90 B5MC51;Q96C90 LIMK2;PPP1R14B LIM domain kinase 2;Protein phosphatase 1 regulatory subunit 14B 0 ; 212.18 1.8096e-22 1574140000.0 1103730.0 901790.0 811970.0 726810.0 702340.0 1109460.0 1006310.0 975180.0 1488560.0 1071380.0 False True 1097787.640315932 931805.5350064331 926288.3182302404 818824.0714784921 791778.8359046743 1032765.6415879206 957630.9408224864 1047952.8834637031 1121724.3336820805 1003003.6111454354 1.0945001873545128 0.9290151347932899 0.9235144399653898 0.8163720074181894 0.7894077619525803 1.0296729045755846 0.9547632034234322 1.0448146664865299 1.1183651995041828 1.0 19.935895369463932 2.05099935847604 1.5825197199421885 1.0592689820555519 0.9134021992268869 0.2925550250521953 0.08735215211963221 0.4852619413203054 2.2863769903424855 0.05739532655353294 0.02910957297845685 112.46033127427259 -2.05099935847604 -0.14586678282866494 ELLVHLDDPER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLVHLDDPER 11 0 Q86Y56;H0Y650;Q86Y56-2;E9PGY2;Q86Y56-3 Q86Y56 DNAAF5 Dynein assembly factor 5, axonemal 0 135.66 0.00011535 178070000.0 86801.0 105190.0 100040.0 103560.0 101610.0 109830.0 109630.0 93623.0 119430.0 107300.0 False True 86333.67306049765 108691.18556130234 114124.76243673201 116670.68538175395 114549.43121034541 102237.71061201069 104326.77807273026 100609.62366796118 89998.07678000936 100452.02213584818 0.8594518181400339 1.0820208817131802 1.1361121459794332 1.1614568119293025 1.140339724126532 1.0177765309069398 1.0385731999664674 1.0015689234398872 0.8959309615320513 1.0 16.61614708077777 1.8172733834787 1.5070852347936747 0.9520791901502649 1.0790148446648333 0.2252963519625707 0.08456241364042072 0.5574369329657268 2.401930763969618 0.06497909404041581 0.02696298171726449 65.65584323765616 -1.8172733834787 0.12693565451456845 ELLVSALQELESSTSNS(ph)PSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLVSALQELESSTSNSPSNK 21 0 A0A087WVI0;E9PBL8;Q8WTW3 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 1 ELLVSALQELES(0.002)S(0.007)T(0.034)S(0.042)NS(0.912)PS(0.002)NK 118.57 5.1199e-05 23505000.0 23801.0 24716.0 23255.0 23565.0 23059.0 25664.0 25840.0 27301.0 33059.0 26482.0 True False 23672.8580605397 25538.657118862477 26529.10186391647 26548.32658382612 25995.426968599095 23889.908086557763 24590.020481614065 29338.339251668996 24912.05241790447 24791.896087619145 0.9548627493788875 1.0301211746210996 1.0700715173279896 1.0708469610391809 1.048545334198177 0.963617627394307 0.9918571937663979 1.1833842457221457 1.004846597043674 1.0 14.597580992708565 ELLVSQHTVQLVGGLS(ph)PLSS(ph)PSDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLVSQHTVQLVGGLSPLSSPSDTK 25 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 ELLVSQHTVQLVGGLS(1)PLS(0.24)S(0.626)PS(0.133)DT(0.001)K 128.65 5.7671e-05 135670000.0 95474.0 103260.0 98678.0 83413.0 89999.0 112640.0 117590.0 109550.0 134290.0 107880.0 True False 94959.9785921586 106696.94667801172 112571.0046754483 93973.07724747248 101459.83918413421 104853.46192603899 111901.72246257737 117725.17728362836 101196.02889380783 100995.00603928525 0.9402442983687814 1.0564576493664304 1.1146195152625686 0.9304725147589836 1.0046025359379467 1.038204422555833 1.1079926310321682 1.1656534506056209 1.0019904237091128 1.0 16.62392443136949 2.390971968925709 4.458924845057145 1.0920912783047216 1.0139777729704744 0.10689372804803765 0.06837110827099153 0.3365848206589316 12.26539334935397 0.024682789498807697 0.020475776224236655 246.020880746859 -2.390971968925709 -0.07811350533424721 ELLVSQHTVQLVGGLS(ph)PLSSPSDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELLVSQHTVQLVGGLSPLSSPSDTK 25 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 ELLVSQHTVQLVGGLS(0.893)PLS(0.08)S(0.02)PS(0.006)DT(0.002)K;ELLVSQHTVQLVGGLS(0.995)PLS(0.003)S(0.001)PSDTK;ELLVSQHTVQLVGGLS(1)PLSSPSDTK;ELLVSQHTVQLVGGLS(1)PLSSPSDTK 214.62 1.1652e-33 8536490000.0 2661040.0 3263490.0 3341690.0 3255259.0 3387770.0 3945760.0 3950550.0 3931160.0 4266170.0 4048620.0 True False 2646713.25630934 3372113.291828639 3812170.9055098267 3667374.455630777 3819182.428614032 3672998.898519959 3759446.8039334505 4224523.121226004 3214829.5672492073 3790233.6054020314 0.6982981873563442 0.8896848170578545 1.0057878490857475 0.9675853357439105 1.007637741159474 0.9690692661489297 0.991877334044872 1.1145812002735138 0.8481877113503692 1.0 21.85385533882052 4.691524244963757 1.9106674938063242 0.9989526228590412 0.6220355821849345 0.6667792933578329 0.06211843010889646 0.3943392163034953 1.6354210885905982 0.01583716699650427 0.25483108976252666 49150.08180033344 -4.691524244963757 -0.3769170406741067 ELLVSQHTVQLVGGLSPLS(ph)S(ph)PSDTKAESPAEKVPEESVLPLVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELLVSQHTVQLVGGLSPLSSPSDTKAESPAEKVPEESVLPLVQK 44 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 ELLVSQHTVQLVGGLS(0.296)PLS(0.356)S(0.366)PS(0.363)DT(0.342)KAES(0.269)PAEKVPEES(0.008)VLPLVQK 94.079 0.00011892 433440000.0 68840.0 62626.0 63721.0 61189.0 63815.0 108760.0 103770.0 94232.0 162680.0 106520.0 True False 68469.37308884303 64710.46855178353 72692.36292713913 68935.52112615049 71941.46198886115 101241.67719350148 98750.24866010403 101264.07034040052 122589.69380031772 99721.80240363978 0.6866038462853128 0.6489099373661305 0.7289515549759648 0.6912783309624013 0.7214215974322916 1.0152411484071433 0.9902573587709211 1.0154657045860258 1.2293168679815525 1.0 16.6056213383445 2.731800732915438 3.0422658297139877 1.0502525228947124 0.6882528722322437 0.8806441856286051 0.06546596480892196 0.08597936907037276 1.6258189442535866 0.022238329599308295 0.02211151785934378 539.2631359513583 -2.731800732915438 -0.36199965066246864 ELMETMHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELMETMHR 8 0 E9PM90;Q9UK41;Q9UK41-2 E9PM90 VPS28 Vacuolar protein sorting-associated protein 28 homolog 0 ;;; 179.68 0.00024309 606870000.0 647685.0 816340.0 768726.0 774241.0 741045.0 762110.0 777777.0 648941.0 837480.0 770587.0 False True 644197.9359245681 843511.3834120497 876955.9389138265 872259.8312152815 835412.6882321654 709427.1295139707 740152.9551133265 697368.2726756278 631094.2756570572 721407.4779272769 0.8929737431825013 1.1692578871452755 1.2156180324515988 1.2091083859033849 1.158031644795871 0.983393090895415 1.025984589513694 0.9666773550494407 0.8748097226137654 1.0 19.46045485225135 2.7177599261496503 7.6882915762480835 0.9723692216531562 1.1405550020751816 0.4202130990884878 0.09277080647324071 0.2004628345559286 59.392782667815645 0.030358689561429918 0.02926747588369337 522.107493166286 -2.7177599261496503 0.16818578042202537 ELNDMQAQLVEECAHR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELNDMQAQLVEECAHR 16 0 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 0 ;; 185.63 1.6312e-09 780260000.0 370655.0 459090.0 433885.0 454839.0 437350.0 455903.0 453358.0 410986.0 443750.0 465750.0 False True 368659.43466364156 474370.53312423476 494972.2366039728 512421.5707643065 493043.93012345774 424387.49869022507 431427.3415442566 441655.8622646212 334393.75844535866 436025.4362513639 0.845499835590127 1.0879423393335368 1.1351911963196264 1.1752102702304301 1.1307687330406644 0.9733090398092517 0.989454526445433 1.012913067782613 0.7669134198230223 1.0 18.734052773850248 1.979059841965264 1.246570981940217 0.9118701860088833 1.077455176819197 0.2563023447373458 0.10619034489601821 0.6292647605198523 1.809990871332313 0.07999383935038161 0.036676462094721515 95.29274600123003 -1.979059841965264 0.16558499081031364 ELNEDKLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELNEDKLEK 9 1 O00567;A0A494C128;Q5JXT2 O00567 NOP56 Nucleolar protein 56 0 ;;; 103.34 0.0031354 2711920000.0 4110080.0 3438100.0 3101950.0 2810680.0 2974250.0 4859670.0 4261660.0 4468470.0 7475500.0 4376260.0 False True 4087951.7859528167 3552535.080124665 3538677.5973672615 3166511.7998144855 3353003.107739097 4523732.451332694 4055507.2246778407 4801929.921830894 5633263.191567958 4096963.340095315 0.9978004308570921 0.8671141978151106 0.86373181881704 0.7728923929645944 0.8184117917103672 1.1041671784223117 0.9898812579034427 1.172070512527256 1.3749850130308712 1.0 21.966123552867476 2.2825660068808076 1.3592806035790952 1.1882154315390796 0.8629333353175671 0.5603227266432765 0.11519470200239884 0.30261459837283233 1.1009388183106146 0.06709199961526593 0.040753688450307135 191.67523610037583 -2.2825660068808076 -0.3252820962215125 ELNFVTDSVEQELPSS(ph)PKQPICFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELNFVTDSVEQELPSSPKQPICFDR 25 1 B4DP81;Q8TAP6-2;Q8TAP6 B4DP81 CEP76 Centrosomal protein of 76 kDa 1 ELNFVTDS(0.004)VEQELPS(0.246)S(0.749)PKQPICFDR 54.867 0.066041 61882000.0 16020.0 16348.0 17621.0 16891.0 15791.0 21559.0 21765.0 23118.0 26009.0 18612.0 True False 15933.750099989324 16892.133297425313 20101.883635522332 19029.398868126762 17801.890249410128 20068.677074427163 20712.14379962576 24843.182550825386 19599.43045274442 17424.166225465113 0.9144627004707077 0.9694658027732631 1.1536783668961894 1.0921267980281104 1.0216781692195394 1.151772590707792 1.1887021468697494 1.4257888859277243 1.1248417972562839 1.0 14.088802002003769 2.475656108429029 2.3638062638234536 1.2421450976011106 1.0365954041665575 0.2278077147088986 0.12037973396586066 0.3252616896792761 3.680610677915622 0.047481076172994734 0.0397064466490442 298.98961808028184 -2.475656108429029 -0.2055496934345531 ELNHMLSDTGNR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELNHMLSDTGNR 12 0 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 0 ;;;;; 205.96 9.5663e-08 8916540000.0 3848710.0 4838750.0 4767820.0 4812970.0 5028670.0 5789080.0 4842790.0 4141810.0 5215020.0 4877070.0 False True 3827988.972991878 4999804.868663861 5439087.613365647 5422291.508515065 5669041.317237738 5388894.525628507 4608525.746445658 4450892.893885028 3929848.1986878063 4565811.2171303 0.8384028140782052 1.095052911934965 1.1912642364535209 1.187585568183671 1.2416284965896682 1.1802709900510366 1.0093552990441432 0.9748306888348528 0.8607119330609976 1.0 22.12243977892174 2.0062783232185017 2.9297494230471472 0.9445430935262189 1.1321014125975857 0.34454421560506254 0.10993527366575759 0.3040883665013165 5.057185520915056 0.05625394240777519 0.032988369059824336 101.45613721754069 -2.0062783232185017 0.18755831907136677 ELNHMLSDTGNRK ddPTM_BT-474_Trastuzumab_2h_R1 7 ELNHMLSDTGNRK 13 1 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 0 ;;;;;; 138.42 3.1994e-05 4541340000.0 4334410.0 4592820.0 4677210.0 4358580.0 4645120.0 5914220.0 4849980.0 4848780.0 7040770.0 5357560.0 False True 4311074.018158219 4745689.237281679 5335720.5129618915 4910375.781104726 5236648.4982167035 5505383.89197637 4615367.938677184 5210620.585205953 5305666.574984406 5015635.933962117 0.8595269024545553 0.9461789690809571 1.063817347035179 0.9790135978282138 1.0440647142584762 1.0976442398257114 0.9201959630732728 1.0388753597372462 1.057825297697231 1.0 22.258001201489364 4.519386166522763 3.2497706802702995 1.0233138432772915 0.8634125821790043 0.5466294403572867 0.04753391026878428 0.18878182267084256 3.7161077996748824 0.011374873002848103 0.056796428063964545 33066.34300887242 -4.519386166522763 -0.15990126109828717 ELNLQDFSHLDHR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELNLQDFSHLDHR 13 0 Q5VZK9;Q5VZK9-2;Q5VZK9-3;A0A0U1RR91;Q5VZK9-4 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 0 ;; 110.38 0.00061478 276769000.0 144416.0 181608.0 168984.0 162006.0 166681.0 187879.0 171083.0 33380.2 174483.0 118704.0 False True 143638.48030212615 187652.71249564583 192775.4783647414 182515.94298915056 187906.83735431114 174891.36694959443 162807.0616894727 35871.20002522107 131484.00260241484 111128.2090923926 1.2925474231543166 1.688614565358741 1.7347123645668294 1.6423907528052197 1.6909013371940904 1.573780126378072 1.4650381124572431 0.32279112853692765 1.1831739544466007 1.0 16.761865555357616 1.8993829727492788 6.8376043165750255 0.781339711630775 1.611161702064648 0.6819161116968193 0.23496011662150096 0.12310703999228262 7.200687740425851 0.09643161158342858 0.05946069234672467 79.32004880462823 -1.8993829727492788 0.8298219904338731 ELNLSFCEIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELNLSFCEIKR 11 1 P46060;H0Y4Q3 P46060 RANGAP1 Ran GTPase-activating protein 1 0 117.27 0.0014069 319770000.0 137020.0 244490.0 227800.0 311420.0 261270.0 316010.0 317630.0 268850.0 352340.0 365060.0 False True 136282.29954435307 252627.70185267422 259872.25992690475 350845.7400693881 294541.185831384 294164.97250752494 302265.02343556774 288912.95219263795 265510.52811411285 341761.5582564095 0.3987642736638804 0.7391928546367937 0.7603905519763969 1.0265804669762277 0.8618324054175864 0.8607315989787979 0.8844324826281101 0.8453641002417205 0.7768882184078507 1.0 18.38263060453509 4.870673132303237 1.410593334176043 0.8793134709782139 0.08800841827745462 0.7882061199808988 0.07596274152134681 0.7128294637125611 1.0168255263844046 0.01996899139178794 0.8688059500836411 74246.0121858578 -4.870673132303237 -0.7913050527007592 down ELNMIIMLPDETTDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELNMIIMLPDETTDLR 16 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237 A0A2R8YD12 SERPINB6 Serpin B6 0 ; 150.16 1.7816e-06 23568000.0 24961.0 33739.0 33855.0 30394.0 25273.0 33217.0 37987.0 25861.0 41261.0 33781.0 False True 24826.612749427815 34861.982219343794 38621.48972706478 34241.877283632966 28491.366745192976 30920.78697440731 36149.42368556783 27790.879139497152 31092.779419073693 31625.06765863083 0.785029553688634 1.1023528106138163 1.2212302640410178 1.0827447913550308 0.9009108550449968 0.9777303026881806 1.14306233509993 0.878761096718562 0.9831687873271041 1.0 14.948780945859694 3.2687391474666025 24.99049865698399 0.9790966153181035 1.0641182769471684 0.06199438399333779 0.12161575896674459 510.0542637279905 422366.81199941045 0.03414602097494052 0.04622816986751338 1856.6889274711841 -3.2687391474666025 0.08502166162906488 ELNNYEIRPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELNNYEIRPGR 11 1 B7Z8Z7;A0AV96;A0AV96-2;D6R9D6;D6RBS9;D6REZ6;D6R9M7 B7Z8Z7 RBM47 RNA-binding protein 47 0 ;;; 226.04 4.5893e-12 4417730000.0 1987260.0 2604320.0 2393060.0 2530030.0 2490390.0 2497460.0 2440780.0 2192040.0 2346700.0 2343500.0 False True 1976560.8129653442 2691003.2168553164 2729982.047149597 2850331.538590177 2807526.4048020057 2324816.4685884733 2322710.146714935 2355621.1557535795 1768387.229168953 2193935.823628706 0.9009200687083774 1.2265642357780893 1.2443308586092945 1.2991863790599907 1.2796757200301505 1.0596556396728571 1.0586955742731072 1.0736964729704128 0.8060341647751993 1.0 21.065089894387633 1.8974330216029807 1.199552186633219 0.9310789221205756 1.1924904232712166 0.3905990115448503 0.12308916464968289 0.4781620062223746 1.270733337077895 0.09762035228229914 0.04218094132619995 78.96470579082863 -1.8974330216029807 0.26141150115064093 ELNQVMEQLGDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELNQVMEQLGDAR 13 0 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 109.0 0.0013989 0.0 56882.0 94696.0 103670.0 113440.0 100400.0 91621.0 84614.0 81458.0 64847.0 90161.0 False True 56575.75363218433 97847.89911505918 118265.83488420642 127801.49236873472 113185.34488257725 85287.45592263521 80520.89756313057 87536.80959534267 48866.32575528154 84406.84778928437 0.6702744518243547 1.1592412425983427 1.4011402863835003 1.5141128441116765 1.3409497907697765 1.0104328991831235 0.9539616710263272 1.0370818468884424 0.5789379302171408 1.0 16.36507242671516 2.555125784878957 4.033590840764836 0.9178270723007268 1.2395533396613803 0.28511308963425674 0.24094396316450473 0.3232310335715567 9.876873167945046 0.08595595189719721 0.07885895339782244 359.02590439958794 -2.555125784878957 0.32172626736065346 ELNS(ph)NHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 ELNS(0.542)NHDGADET(0.229)S(0.229)EKEQQEAIEHIDEVQNEIDR 70.111 0.0023622 906850000.0 32910.0 23600.0 24013.0 27157.0 19812.0 40690.0 42838.0 32462.0 42237.0 46084.0 True False 32732.81621664473 24385.511733498737 27393.821675262352 30595.07341553006 22334.94076507589 37877.19607395712 40765.76228294827 34884.47927869598 31828.257296803633 43142.87966550264 0.7587072645690391 0.5652267980850052 0.6349558000683634 0.7091569606095187 0.5176970322390203 0.8779477950389113 0.9449012814864297 0.8085802234149396 0.7377406780348448 1.0 15.396834855085533 2.721006468151939 24.832216833158895 0.8636840424052082 0.6370317298611637 0.62509186155565 0.09148110255414245 502.1443718089335 710335.8696109053 0.02862872880405445 0.027047308958152633 526.0251006715455 -2.721006468151939 -0.2266523125440445 ELNS(ph)NHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 ELNS(0.333)NHDGADET(0.333)S(0.333)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.361)NHDGADET(0.319)S(0.319)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK 120.5 1.706e-08 553190000.0 251075.0 218490.0 168260.0 197218.0 205090.0 320059.0 317839.0 264877.0 568450.0 335451.0 True False 249723.24009705483 225762.30757000612 191949.54545786208 222185.77857878292 231206.99583633215 297934.07466784574 302463.9133071101 284643.46675815276 428363.11433975067 314042.2299859503 0.7951899975625158 0.7188915566549962 0.6112220813947525 0.7075028686069487 0.7362289964845682 0.9487070407096995 0.9631313384847694 0.9063859557069355 1.3640302909545474 1.0 18.260599049142126 2.27293775444466 0.9159288587949732 1.1119957356637988 0.694926378196455 0.6680595256819115 0.1175940179908587 0.3566825522367568 0.573942936473813 0.08744372686122646 0.05167022703613776 187.47257924472555 -2.27293775444466 -0.41706935746734386 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 16 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 ELNS(0.101)NHDGADET(0.45)S(0.45)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.953)S(0.047)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.637)S(0.363)EKEQQEAIEHIDEVQNEIDR;ELNS(0.276)NHDGADET(0.362)S(0.362)EKEQQEAIEHIDEVQNEIDR;ELNS(0.023)NHDGADET(0.489)S(0.489)EKEQQEAIEHIDEVQNEIDR;ELNS(0.207)NHDGADET(0.397)S(0.397)EKEQQEAIEHIDEVQNEIDR;ELNS(0.24)NHDGADET(0.38)S(0.38)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.574)S(0.426)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR;ELNS(0.056)NHDGADET(0.472)S(0.472)EKEQQEAIEHIDEVQNEIDR;ELNS(0.004)NHDGADET(0.498)S(0.498)EKEQQEAIEHIDEVQNEIDR;ELNS(0.271)NHDGADET(0.365)S(0.365)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.825)S(0.175)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.838)S(0.162)EKEQQEAIEHIDEVQNEIDR 379.73 1.204099999999999e-148 36630010000.0 5334813.0 3827581.0 3625597.0 3328038.0 3415674.0 4827516.0 4318007.0 3777892.0 5135893.0 4551385.0 True False 5306090.959561445 3954979.7197634256 4136049.5433459426 3749367.2695685793 3850639.837614064 4493801.181670313 4109128.505021394 4059817.484786867 3870220.9875903274 4260911.71266326 1.2452947437967217 0.9282003445434889 0.970695903192213 0.879944838665774 0.9037126552446781 1.0546571918669223 0.9643777628175744 0.9528048827487439 0.9083081858016876 1.0 22.022730728086852 4.7412281668974785 24.984140622896945 0.9507557241935781 1.2452948495879341 0.7690207087310568 0.0483173439576004 114.4420318255013 1071797.7811414741 0.01158693713366891 0.08001779186686785 55109.71523107182 -4.7412281668974785 0.294539125394356 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 ELNS(0.148)NHDGADET(0.425)S(0.425)EKEQQEAIEHIDEVQNEIDRLNEQAS(0.001)EEILK;ELNS(0.149)NHDGADET(0.426)S(0.426)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.092)NHDGADET(0.454)S(0.454)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.019)NHDGADET(0.491)S(0.491)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK 142.51 1.075e-13 3635370000.0 1033688.0 994093.0 962213.0 893423.0 932970.0 1642546.0 1609974.0 1337555.0 2436286.0 1575409.0 True False 1028122.7386615343 1027180.7845630926 1097684.2266946747 1006530.260195275 1051778.1993535655 1529000.6611573854 1532093.4069220645 1437370.1460666677 1835895.9598598515 1474865.0488444956 0.6970961441299541 0.6964574727483388 0.7442607902022434 0.6824558362026788 0.7131352120504831 1.0367054683106791 1.038802436956795 0.9745774009580037 1.2447891156538091 1.0 20.49215152225979 2.7352328554411662 5.709825797787972 1.0501903706297473 0.7057014380202655 0.8649117650283199 0.06959542889673531 0.05658127870052612 7.442588278242078 0.021694859356780352 0.021591027929532 543.5416838336063 -2.7352328554411662 -0.34448893260948177 ELNSNHDGADETS(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELNSNHDGADETSEK 15 0 Q01105-2 Q01105-2 SET Protein SET 1 ELNSNHDGADET(0.153)S(0.847)EK;ELNSNHDGADET(0.176)S(0.824)EK 210.38 1.2329000000000002e-09 1190430000.0 1446830.0 1221890.0 1166700.0 1062990.0 1039370.0 1737690.0 1540490.0 1537210.0 1998820.0 1636310.0 True False 1439040.428037924 1262559.8700018963 1330961.2188618064 1197564.42500918 1171727.6086713567 1617567.5803822707 1465970.613456721 1651924.4159942165 1506237.5938157805 1531879.294884527 0.9393954424760331 0.8241901788332924 0.8688420969630862 0.7817616107275948 0.7648955192384668 1.0559367084494753 0.9569752775901483 1.0783646084326366 0.9832612783824594 1.0 20.54687119326324 2.7323416481542018 24.99961350699682 1.01972156379446 0.834002689373751 0.7252344755999969 0.055071386844671166 253.16531099571654 1017696.281426565 0.01752117198276901 0.016891775844863496 539.9352084493935 -2.7323416481542018 -0.1857188744207091 ELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 ELNSNHDGADET(0.152)S(0.848)EKEQQEAIEHIDEVQNEIDR;ELNS(0.179)NHDGADET(0.179)S(0.642)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.157)S(0.843)EKEQQEAIEHIDEVQNEIDR 163.09 2.325e-14 9868500000.0 804814.0 629351.0 552523.0 513409.0 454414.0 630031.0 657187.0 537653.0 733463.0 672026.0 True False 800480.9708472424 650298.5675842859 630313.4357839907 578406.5267589891 512280.9293772051 586478.4399034476 625396.3541118607 577775.397006615 552710.871550666 629136.7253295954 1.2723481854089542 1.033636316881047 1.0018703572800949 0.919365383503833 0.8142600944315065 0.9321955249015232 0.9940547561966357 0.9183622156279734 0.8785226633544704 1.0 19.263014055165705 4.980831525204694 1.1898423812960264 0.9214843960475992 1.6012512987406256 0.7979143090971932 0.052583309407814076 1.0725443034641167 0.8833674407553418 0.015339337815955768 1.0311783494724782 95682.28213554669 -4.980831525204694 0.6797669026930263 ELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 ELNSNHDGADET(0.188)S(0.812)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNSNHDGADET(0.177)S(0.823)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK 267.01 4.693999999999999e-68 2445050000.0 796770.0 692440.0 672810.0 702060.0 737140.0 1184650.0 1180590.0 1007030.0 1922430.0 1189730.0 True False 792480.2788494683 715487.44681118 767535.7998306445 790940.724016167 831010.4096289141 1102757.9338661425 1123480.3514082318 1082179.692194726 1448672.8857422222 1113800.412820903 0.711510132091231 0.64238389443498 0.6891143071914653 0.7101278783089738 0.7461035209389342 0.9900857650727627 1.0086909094985992 0.9716100656255895 1.3006575227182702 1.0 20.08705930179481 2.656150510894454 1.1375270881686785 1.0857436498017774 0.6693130122960677 0.8132067234170527 0.0860503488568432 0.1986660941508894 0.5307184382818938 0.0443185707218027 0.03791092795029463 453.05456516593017 -2.656150510894454 -0.41643063750570974 ELNSNHDGADETSEK ddPTM_BT-474_Trastuzumab_2h_R1 10 ELNSNHDGADETSEK 15 0 Q01105-2 Q01105-2 SET Protein SET 0 ;;;;;;;;; 272.95 1.9538e-33 16582798000.0 8498246.0 9222393.0 8613883.0 7946555.0 8636836.0 10494992.0 10257317.0 9813446.0 11066488.0 9803297.0 False True 8452492.387779895 9529354.775950707 9826642.85318676 8952588.048221353 9736685.870062344 9769497.905593792 9761131.389953872 10545775.172189089 8339300.315741887 9177642.19243519 0.920987352802552 1.038322760480401 1.0707154024033012 0.9754779997416613 1.060913649269085 1.064488863342967 1.0635772440550832 1.1490723816713624 0.9086538939833241 1.0 23.129692131003335 3.2129194471503864 24.688783831193252 1.0578479194957164 1.0089677612969834 0.03804574492914159 0.06895656150138951 457.853229165375 440845.6035258135 0.01979893465477758 0.023672951947872486 1632.7490778498109 -3.2129194471503864 -0.04888015819873304 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 0 ;;;;; 339.45 1.0584e-117 12120870000.0 784635.0 853625.0 897177.0 831727.0 848784.0 1055222.0 970953.0 895937.0 1252554.0 1015963.0 False True 780410.6123411432 882037.3920977908 1023491.723197719 937023.5529211097 956871.6112630819 982276.9868654013 923984.2939893417 962796.3684159035 943878.850063703 951123.3715303161 0.820514599578703 0.9273638084180721 1.076087239398781 0.9851756154551009 1.0060436320931923 1.0327545471676933 0.971466290963591 1.01227285253942 0.9923831947742416 1.0 19.85927296163303 4.544689264430902 3.586504236237003 1.0080969200428773 0.8266224298152599 0.8113046076428403 0.028331083948585207 0.09147799678409518 2.1401180967486124 0.006541789333827152 0.03257083478214341 35050.10024685633 -4.544689264430902 -0.1814744902276174 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_BT-474_Trastuzumab_2h_R1 8 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 0 ;;;;;;; 251.1 1.3358e-56 1707992000.0 394555.0 433202.0 433328.0 460796.0 424457.0 636826.0 615274.0 509481.0 929824.0 607968.0 False True 392430.75971918163 447620.86669386114 494336.81584550434 519132.72635352175 478509.08299625624 592803.7175471566 585510.8460450697 547501.0593120978 700681.334203261 569166.9617324074 0.6894826757419593 0.7864491384591452 0.8685268982248405 0.9120921649658064 0.8407183044142085 1.0415286856123984 1.0287154480346425 0.9619340125534276 1.231064663469846 1.0 19.11849239503599 4.181296213192324 0.3984302692620755 1.0794655070518997 0.5425648956208572 0.7126937522376765 0.07747205908135313 2.0012332379043145 0.3492247099083013 0.06608695803667028 0.4945354694943059 15180.854338341667 -4.181296213192324 -0.5369006114310425 ELNYFAK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELNYFAK 7 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;; 126.67 0.0091423 1609820000.0 1380566.0 1520040.0 1402060.0 1296478.0 1210700.0 1678580.0 1690280.0 1394990.0 1854350.0 1627840.0 False True 1373133.1860513007 1570633.6125164179 1599457.8610760157 1460611.9818691164 1364875.4686188875 1562543.7155522956 1608514.6989033506 1499091.2374156876 1397370.2895169605 1523949.8575360593 0.9010356733596203 1.0306333930539142 1.0495475642893124 0.9584383466728044 0.8956170453177736 1.0253248870528031 1.05549056679858 0.9836880327804464 0.9169398078334715 1.0 20.539384003996513 ELPDLEDLMK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELPDLEDLMK 10 0 Q9HC38-2;F6TLX2;Q9HC38 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 74.92 0.09433 10513000.0 41060.0 28310.0 22125.0 19763.0 22352.0 26106.0 26136.0 20695.0 41809.0 25336.0 False True 40838.93752219486 29252.281236243605 25240.007686052526 22264.99377365396 25198.394709316402 24301.353666913845 24871.701830784245 22239.36598708068 31505.73216189745 23719.034788759098 1.7217790641948554 1.2332829517205657 1.0641245696057686 0.9386972940486501 1.0623701568690478 1.0245506987675028 1.0485967094483717 0.9376168206313497 1.3282889646432248 1.0 14.533757682274713 4.739602671300472 2.0064205104149995 1.0373010771930171 1.925462922858418 0.7926314822577908 0.10354243635727786 0.29541652034133925 1.2756170415697636 0.025112258126199466 0.4828627714177972 54903.83380928894 -4.739602671300472 0.8881618456654008 ELPDLEDLMKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELPDLEDLMKR 11 1 Q9HC38-2;F6TLX2;Q9HC38 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 77.305 0.052881 30332000.0 60509.0 66711.0 55705.0 57511.0 60462.0 67181.0 68178.0 64023.0 78637.0 70883.0 False True 60183.22626718188 68931.43530734892 63547.77980346019 64791.88670326433 68161.47731364919 62536.93559706356 64879.96967474777 68800.72136220663 59257.96503181452 66359.18625401054 0.9069313483865182 1.038762516518697 0.9576335002091676 0.9763815736867707 1.0271596317160945 0.9424005797431554 0.9777089403477524 1.0367927222442175 0.8929881208154984 1.0 16.018008574545732 4.768987187930906 23.405935440593602 0.9856353870838893 0.9069310390258455 0.21714785759057742 0.0433076238712621 7248.436041842166 5575701.861996782 0.009660338524437038 1.0351992313570662 58747.20213329375 -4.768987187930906 -0.07870434805804383 ELPDVLER ddPTM_BT-474_Trastuzumab_2h_R1 4 ELPDVLER 8 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ;;; 112.41 0.0070868 578765000.0 1021100.0 1302080.0 1259520.0 1307440.0 1313970.0 1283290.0 1278210.0 1119340.0 1382430.0 1311050.0 False True 1015602.5110548764 1345418.9456760199 1436849.4680559041 1472961.7699451577 1481296.290989643 1194579.182839727 1216378.0990636174 1202870.8346933494 1041748.6501129392 1227377.6665536226 0.8274572193468424 1.096173559564472 1.1706661341577622 1.2000884569466832 1.2068789675381688 0.9732775944946179 0.9910381557447667 0.9800331776208 0.8487596593134087 1.0 20.2271478067753 2.619843004667595 7.548492296067809 0.9606723495850242 1.1092646111851197 0.29955033591125 0.10795496871389848 0.3526884546832307 20.587952479453 0.036351675561327 0.034222548476606246 416.71871446053734 -2.619843004667595 0.14859226160009542 ELPDVQGESDSIS(ph)PLLLHLEDDDFSENEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELPDVQGESDSISPLLLHLEDDDFSENEK 29 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 ELPDVQGES(0.006)DS(0.206)IS(0.788)PLLLHLEDDDFSENEK 240.87 1.2991e-45 102110000.0 119960.0 120360.0 112110.0 107240.0 105070.0 141940.0 144340.0 124000.0 191150.0 145530.0 True False 119314.1486888089 124366.10984084342 127894.11352241141 120816.57300443514 118450.04170131873 132128.02189082015 137357.72276765373 133253.50965924156 144043.64377877265 136242.1508054985 0.875750624776496 0.9128313749126765 0.9387264716996072 0.8867782275172302 0.8694081897636798 0.9698028188020039 1.0081881558354715 0.9780637553900366 1.0572619628151032 1.0 17.05581359004986 2.5444506369330204 3.9940327979452275 1.0046923923559712 0.8997102044450915 0.8069121545928956 0.026395542661521155 0.10507261493244067 3.267324842176364 0.009204901658077956 0.008398662617627515 350.3084690454596 -2.5444506369330204 -0.10498218791087965 ELPDVQGESDSISPLLLHLEDDDFS(ph)ENEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELPDVQGESDSISPLLLHLEDDDFSENEK 29 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 ELPDVQGESDSISPLLLHLEDDDFS(1)ENEK;ELPDVQGESDSISPLLLHLEDDDFS(1)ENEK;ELPDVQGESDSISPLLLHLEDDDFS(1)ENEK 228.69 4.3519999999999997e-35 110546000.0 93689.0 85948.0 76200.0 77341.0 81832.0 107123.0 96517.0 91105.0 132004.0 94629.0 True False 93184.58883382643 88808.72722333681 86928.29765772661 87132.36267004856 92252.82014373568 99717.8391504181 91848.10397925472 97903.71772181612 99473.38296297725 88589.69620403719 1.05186712255121 1.0024724209325107 0.9812461424127238 0.9835496271413762 1.041349322739088 1.125614415933326 1.0367808889163912 1.1051366232967677 1.1228549958436822 1.0 16.434851289393105 2.9967214750618756 6.030269550489031 1.0829812698809473 1.0037011471515824 0.42239325535565775 0.040200397263248505 0.13181024114793388 19.717249363974204 0.011476652674936484 0.013073702593198993 992.479340108004 -2.9967214750618756 -0.07928012272936491 ELPEQLQEHAIEDK ddPTM_BT-474_Trastuzumab_2h_R1 6 ELPEQLQEHAIEDK 14 0 Q15424;Q15424-3;Q15424-4 Q15424 SAFB Scaffold attachment factor B1 0 ;;;;; 195.84 2.5685e-08 2016130000.0 2772020.0 2342470.0 2108700.0 1909660.0 2031200.0 2584700.0 2416870.0 2458310.0 3285500.0 2571220.0 False True 2757095.7523203753 2420437.6978969835 2405586.630851025 2151422.760198151 2289861.280134372 2406025.7727293437 2299956.764760004 2641761.5752452435 2475832.548444454 2407122.5382678094 1.145390693032358 1.0055315670131009 0.9993619321856836 0.8937736762443085 0.9512857130165796 0.999544366553414 0.9554797182926453 1.0974769806053508 1.0285444588234753 1.0 21.198878155611634 1.746760917139712 24.99999999999995 1.050203259426165 0.9884844354200641 0.10149081805794036 0.06466705742970909 3.586906863009632 10963.160553770407 0.03063514422214486 0.016988627369907135 55.81628366843729 -1.746760917139712 -0.06171882400610085 ELPGHTGYLSCCR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELPGHTGYLSCCR 13 0 P62879;E7EP32;C9JZN1;C9JIS1;C9JXA5;P62879-2;Q9HAV0;H7C5J5 P62879 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 0 ; 207.47 5.3656e-08 373530000.0 199311.0 255590.0 327460.0 248890.0 214140.0 271890.0 261200.0 208713.0 440410.0 242780.0 False True 198237.9317215337 264097.1586425823 373563.52166665636 280399.4484807334 241409.45969278 253094.88426021606 248564.75811910204 224288.22388313926 331876.85669165186 227285.57254558452 0.8721976036634486 1.1619618248739252 1.6435866011325213 1.2336878462644008 1.0621415912546002 1.113554553531792 1.093623125019296 0.9868124112372152 1.460175641483317 1.0 17.79414658324042 3.307988190639243 7.088358432114362 1.1079143260949307 1.2542938792250002 0.05135245229839125 0.21425059903585478 0.581694758346096 48.92684347976067 0.06057729748142801 0.08192692486421141 2032.3017477177923 -3.307988190639243 0.14637955313006956 ELPPAAAIGATSLVAAPHS(ph)SSSSPSKDSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 ELPPAAAIGATSLVAAPHS(0.193)S(0.193)S(0.193)S(0.193)S(0.193)PS(0.033)KDS(0.001)S(0.001)R;ELPPAAAIGATSLVAAPHS(0.201)S(0.147)S(0.147)S(0.147)S(0.147)PS(0.201)KDS(0.006)S(0.006)R 153.25 9.0496e-09 822610000.0 290270.0 365710.0 391470.0 446400.0 441030.0 561250.0 578910.0 578440.0 558470.0 665380.0 True False 288707.21857202897 377882.4362736366 446585.57328176225 502914.19422957685 497192.556310389 522452.10854038876 550905.9116490403 621606.1300588043 420842.55161460163 622914.8787395223 0.46347780158379326 0.6066357526060181 0.7169287305922679 0.8073562077169056 0.798170943221754 0.8387215113525278 0.884399988588821 0.9978989927430112 0.6756020220068959 1.0 19.24867550701103 5.078150941498898 0.5053467268335284 0.9048681022102943 1.1120228300513436e-14 0.7191743375113187 0.08485711115320999 3.048582083987133 0.46515018802427655 0.047752675651991906 1.7581044501502119 119715.65375232985 -5.078150941498898 -0.9048681022102832 down ELPPAAAIGATSLVAAPHSSS(ph)SSPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSK 26 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 ELPPAAAIGATSLVAAPHS(0.114)S(0.114)S(0.523)S(0.114)S(0.114)PS(0.022)K 103.42 5.9041e-09 0.0 28622.0 33560.0 42599.0 38413.0 35490.0 54746.0 44859.0 42380.0 44684.0 53763.0 True False 28467.902332203143 34677.02431255159 48596.568922854334 43276.08186142636 40009.44113428949 50961.537878222065 42688.99879197852 45542.61080127949 33672.226934923754 50331.799311179944 0.5656047016360036 0.6889685007714191 0.9655241733442227 0.8598159106903549 0.7949137857545736 1.0125117435827937 0.8481516531537197 0.9048476594232017 0.6690050305323441 1.0 15.619182553202188 4.418789458972134 4.518826983558043 0.8783140717451662 0.5895968848661483 0.5379706321974844 0.09716404087169678 0.13026682432258305 5.3176017305529095 0.02249841518843078 0.07068034681180135 26229.466603882483 -4.418789458972134 -0.28871718687901793 ELPPS(ph)PEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELPPSPEKK 9 1 E7EVA0;P27816-4;H0Y2V1;F8W9U4;H7C4C5;B5MEG9;P27816-3;P27816-6;P27816;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK 93.011 0.0059341 970040000.0 2652480.0 1562150.0 1338600.0 1198650.0 1238570.0 2366180.0 2169660.0 2006380.0 3970620.0 2312510.0 True False 2638199.3423982323 1614145.2184103841 1527063.2446802217 1350398.9670996456 1396294.5479204562 2202611.5459885946 2064705.2568939154 2156106.2637912007 2992113.904582104 2164923.631960581 1.2186108107698224 0.745589911154785 0.7053658716346011 0.6237628649638361 0.6449624953541455 1.0174084265475374 0.953708124579015 0.9959271689591216 1.3820875066490959 1.0 21.045884703867415 2.016222838334062 1.2893670763004876 1.1507559768530573 0.7846649393006007 0.34929449944782553 0.19167501023352207 0.4954497428181069 1.531102444927138 0.13890626311824605 0.06573134910471906 103.80609126344297 -2.016222838334062 -0.36609103755245664 ELPQLVASVIESESEILHHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELPQLVASVIESESEILHHEK 21 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 0 ;; 215.58 3.7647e-25 124922000.0 183516.0 216395.0 210730.0 189093.0 208259.0 230740.0 233853.0 146117.0 279761.0 227739.0 False True 182527.97024654428 223597.57676146008 240398.9523020047 213032.15441185812 234779.54920219752 214789.4869035356 222540.63698478692 157020.99250709187 210817.65015533965 213204.5020428328 0.8561168666591965 1.0487469758801777 1.1275510132225468 0.9991916323092461 1.101194144366756 1.0074341059664134 1.0437895769202776 0.7364806605985569 0.9888048710762513 1.0 17.701878376916138 1.784939832982505 24.999999860781525 0.8802541951919903 1.0321612400470774 0.22067425953892783 0.09682884649399619 100.97770340357486 54447.92423133331 0.042567501360147975 0.023791825575871235 60.94524580441807 -1.784939832982505 0.1519070448550871 ELPSQASGGLANPPPVNLEDS(ph)LDEDLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELPSQASGGLANPPPVNLEDSLDEDLIR 28 0 Q9NPG3;Q9NPG3-2;K7EJT1 Q9NPG3 UBN1 Ubinuclein-1 1 ELPSQASGGLANPPPVNLEDS(1)LDEDLIR 80.359 0.0037608 33105000.0 25720.0 22150.0 21904.0 19373.0 23366.0 31547.0 24390.0 24799.0 33523.0 33224.0 True False 25581.526377760627 22887.24936004225 24987.892807018983 21825.61981364156 26341.52159886751 29366.230143650155 23210.162521151968 26649.627306770435 25261.705835185945 31103.61587550253 0.8224614938711627 0.735838863611624 0.8033758167229572 0.7017068337328458 0.846895798363248 0.9441420014056707 0.7462207163969153 0.8568015826018448 0.8121790706360374 1.0 14.924794686671317 3.110461747429213 8.823139728414416 0.8564450548074555 0.7665743580292992 0.3175912964965134 0.07214268509394972 0.3447905709039364 25.63215902181906 0.019739654953370114 0.0236235580615517 1289.619963428631 -3.110461747429213 -0.08987069677815629 ELPTAFDYVEFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELPTAFDYVEFTR 13 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 132.32 0.00027954 112670000.0 64880.0 72665.0 76697.0 72491.0 75484.0 65651.0 72385.0 68585.0 92104.0 88296.0 False True 64530.69328884563 75083.61059807989 87495.27093772526 81668.35316733038 85096.43997127956 61112.700895830974 68883.46101244712 73703.1609675733 69406.20333036917 82660.87368599113 0.7806679316502543 0.9083331357384941 1.0584847103128725 0.9879928619865416 1.0294645601562422 0.7393183518478584 0.8333260700112958 0.8916329779861022 0.8396500089513538 1.0 16.334916991940652 2.7546121281295095 24.997618728738228 0.8550474227776499 0.958313345438974 0.1949794505927387 0.09299756299365909 1280.2907588269063 1993842.828198894 0.02887448892249018 0.030534985602268097 568.3451105508208 -2.7546121281295095 0.10326592266132406 ELQAHGADELLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELQAHGADELLK 12 0 O15144;C9JTV5;G5E9J0 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;;; 170.22 4.1727e-05 3495280000.0 6065740.0 5746650.0 5391040.0 4983250.0 5165630.0 6506230.0 6677920.0 5871360.0 8274300.0 6705170.0 False True 6033082.729807064 5937923.7713267235 6150051.572240296 5614128.939055871 5823442.361412219 6056469.634118011 6354883.497468265 6309510.69736198 6235209.634939556 6277240.310015151 0.9611043120623339 0.9459449500209418 0.9797381123720993 0.8943625959482059 0.9277074118257173 0.9648299786221491 1.0123690003279364 1.0051408558145116 0.9933042749680084 1.0 22.5816990096345 2.409265897749927 4.004388780387549 1.0034434882427083 0.9417015815568879 0.6457580703345178 0.021242337037188586 0.1415331436363534 4.547527363999233 0.007963875404587048 0.006635133387621188 256.60546282487945 -2.409265897749927 -0.06174190668582047 ELQAHGADELLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELQAHGADELLKR 13 1 O15144;C9JTV5;G5E9J0 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ; 153.09 2.9563e-05 945330000.0 979010.0 1047910.0 905700.0 956150.0 992730.0 1109600.0 1151200.0 986340.0 1480610.0 1280020.0 False True 973739.118938236 1082789.0508750281 1033214.6875144765 1077198.4919637318 1119148.2811282957 1032895.9637174453 1095512.0579889363 1059945.6993330359 1115733.5046575377 1198328.0277197442 0.8125814438231321 0.90358318075513 0.8622135705867983 0.898917881453123 0.93392481460847 0.8619475968386605 0.914200479874903 0.8845204942339275 0.9310751971483361 1.0 20.19259145172988 -4.999999999996391 0.11593715001991496 1.358325480702758 0.83166069631676 0.6254185017643706 0.029408542864360145 105.16548053066316 0.7992781598704348 8.8734791921964 0.3002106953504023 1.0000000000083093e-05 4.999999999996391 -0.5266647843859981 ELQDAFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELQDAFSR 8 0 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 ; 98.582 0.017263 315890000.0 282840.0 355730.0 318480.0 326740.0 339430.0 332860.0 309630.0 295510.0 349740.0 323600.0 False True 281317.2208664781 367570.2580066739 363319.21572221536 368105.2504985927 382654.3985407684 309850.17166815867 294652.0139985359 317562.4567693749 263551.26327589824 302947.5709521016 0.9286003514811365 1.2133131051405248 1.1992808345694213 1.2150790624982202 1.2631043627059453 1.0227848029755235 0.9726171861108031 1.048242294108323 0.8699566807801464 1.0 18.208708612451225 2.5847583315740588 5.781503496794627 0.985761617471836 1.1708519360140874 0.4808525659356425 0.09465378339772824 0.20505784269660382 9.338142036568085 0.030720139736502776 0.028795902239291724 384.37783082229333 -2.5847583315740588 0.18509031854225144 ELQELQDSLNAER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELQELQDSLNAER 13 0 P12270 P12270 TPR Nucleoprotein TPR 0 110.74 0.0024071 75540000.0 104940.0 120790.0 98870.0 103980.0 105140.0 129950.0 119040.0 105000.0 150330.0 119350.0 False True 104375.01469993005 124810.42213090295 112790.03660655428 117143.85733869053 118528.95578639618 120966.86236939629 113281.58042303928 112835.63317919656 113283.18581879612 111732.98081932428 0.9341468735064691 1.1170419084471155 1.00946055300305 1.048426851943705 1.060823356874916 1.0826423987112943 1.013859825383332 1.0098686381745718 1.0138741935291118 1.0 16.769695571103025 2.0353798298090275 24.941792088317403 1.0097241196739688 1.045411717640032 0.10905672707708669 0.0453296501065865 340.896781477126 240321.28724273783 0.015750261469493796 0.011632275227382074 108.4875320828679 -2.0353798298090275 0.035687597966063134 ELQELVQYPVEHPDK ddPTM_BT-474_Trastuzumab_2h_R1 11 ELQELVQYPVEHPDK 15 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;;;; 234.85 2.6830999999999998e-17 110207610000.0 33264910.0 30418370.0 28372580.0 26102010.0 27029840.0 34133980.0 32648330.0 32458380.0 41389750.0 33084070.0 False True 33085815.42063896 31430827.057157006 32367192.64511373 29406521.789700646 30471929.905586425 31774378.30534608 31069005.549167775 34880589.13591401 31189800.706735272 30972616.327902667 1.0682279814647933 1.0147940595138405 1.0450261063659227 0.9494361560669592 0.9838345454250443 1.0258861559822803 1.003112078755138 1.1261750950141955 1.0070121418395304 1.0 24.884489920128956 ELQELVQYPVEHPDKFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELQELVQYPVEHPDKFLK 18 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 179.78 4.9214e-14 2081380000.0 2412190.0 3117440.0 2869390.0 3455720.0 3063760.0 3428190.0 3895820.0 3050040.0 5853740.0 4031290.0 False True 2399203.037059503 3221202.1058677286 3273375.170815017 3893213.7976770457 3453911.675671758 3191207.2943912256 3707364.30312236 3277649.472589302 4411164.21309732 3774009.6208389876 0.6357172551473634 0.853522494505892 0.8673468007978538 1.031585551923304 0.9151835905770507 0.8455747639778933 0.9823409783195486 0.8684793632986708 1.1688269655541281 1.0 21.847666670036514 5.303414446123189 0.9863639279558791 0.9564966767347807 5.707130551276803e-14 0.5623021814872895 0.08895308036329366 3.867049920306622 1.3780961463120167 0.02599187551174314 5.120761227705817 201101.0999902024 -5.303414446123189 -0.9564966767347236 ELQEMDKDDESLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELQEMDKDDESLIK 14 1 P52566;F5H3P3;H0YGX7;F5H2R5;F5H6Q0 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 0 209.13 6.4419e-09 661060000.0 1127500.0 636740.0 604870.0 487490.0 502270.0 956100.0 851370.0 741580.0 1190200.0 782430.0 False True 1121429.6652770254 657933.5059825421 690030.4383757106 549206.1840165243 566231.1073124706 890007.0574173107 810185.9805507648 796920.4652669382 896891.1578629093 732494.6475279757 1.530973187396834 0.8982093018739963 0.9420279598006983 0.7497750131963236 0.7730173991351177 1.215035577967577 1.1060640282969738 1.0879539774882818 1.2244337359866575 1.0 19.482458691974347 2.715074875617684 24.912668169566945 1.1266357121895958 0.9595566738364579 0.1061822349834669 0.21088573634063357 1639.8566623142701 1739488.0800147273 0.06875522948429458 0.06486011625943922 518.8894916478091 -2.715074875617684 -0.16707903835313787 ELQEVIALTSQELEESR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELQEVIALTSQELEESR 17 0 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 ; 109.79 0.0027741 3652800.0 35886.0 40236.0 34290.8 39412.0 39287.0 42568.0 40243.0 33075.6 45140.0 36182.0 False True 35692.79376330941 41575.23093682435 39118.6465790233 44401.55515899657 44289.966577707295 39625.3743542936 38296.29234681093 35543.86922649362 34015.851845010664 33872.83378303135 1.0537291917155682 1.227391578842498 1.154867845707667 1.3108308399411095 1.3075365014159055 1.1698275558552174 1.130590153516932 1.0493326142762636 1.0042222054078913 1.0 15.04784106652057 1.8618076718435663 1.631072931647594 1.0039957320014907 1.213704947825244 0.5920515564279476 0.06990287217510717 0.2617633838526202 1.3125733981510006 0.050761734373197476 0.022163191787601514 72.74575771889195 -1.8618076718435663 0.20970921582375324 ELQFYR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELQFYR 6 0 H0YG54;H0YGR4;F5GYG5;Q9Y3B8-2;Q9Y3B8-3;Q9Y3B8 H0YG54 REXO2 Oligoribonuclease, mitochondrial 0 107.22 0.07317 96685000.0 84319.0 92696.0 69764.0 81815.0 68297.0 82991.0 59996.0 61935.0 85777.0 75976.0 False True 83865.03587272158 95781.3303240846 79586.1648004416 92172.77061131896 76994.21812196588 77254.02750980036 57093.76427302308 66556.9041995576 64638.40770291275 71127.14663367385 1.1790861835728021 1.3466212952051513 1.1189281247332223 1.2958873647221698 1.0824870920031309 1.0861398378270646 0.8027000516001731 0.9357454551402944 0.9087726805043923 1.0 16.118112668494465 2.719413027850818 1.6693953688345446 0.9082761623882087 1.2330169783057914 0.7279106328540574 0.08448095287954374 0.16883444390387822 0.9397623373664289 0.031064714579307987 0.02975035202179861 524.098634100208 -2.719413027850818 0.32474081591758264 ELQGDGPPS(ph)SPTNDPTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELQGDGPPSSPTNDPTVK 18 0 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 ELQGDGPPS(0.632)S(0.335)PT(0.033)NDPTVK 167.28 2.4745e-11 143900000.0 203110.0 194190.0 191800.0 175050.0 173870.0 232040.0 212830.0 228710.0 284570.0 237140.0 True False 202016.4783276427 200653.49675966593 218803.77284451402 197211.31205171905 196011.31389176994 215999.6209634065 202534.59981044574 245777.50156584816 214441.5365426385 222005.52217423165 0.909961501629219 0.9038220977322875 0.985578064462717 0.8883171468903647 0.8829118842275407 0.972947063874782 0.9122953241293477 1.1070783247137432 0.9659288401589539 1.0 17.76023603711262 1.7609458813137087 24.99999999999945 1.0335777990207153 0.9231182033602631 0.507489561249874 0.04580454753997403 8.150310264235603 9109.487752305009 0.020144482158001725 0.011171407523222697 57.669459533991855 -1.7609458813137087 -0.11045959566045227 ELQGDGPPSS(ph)PTNDPTVK ddPTM_BT-474_Trastuzumab_2h_R1 5 ELQGDGPPSSPTNDPTVK 18 0 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 ELQGDGPPS(0.081)S(0.918)PTNDPTVK;ELQGDGPPS(0.246)S(0.754)PTNDPTVK;ELQGDGPPS(0.017)S(0.976)PT(0.007)NDPTVK;ELQGDGPPS(0.013)S(0.977)PT(0.01)NDPTVK;ELQGDGPPS(0.072)S(0.491)PT(0.429)NDPT(0.008)VK 342.31 1.4144e-75 5154690000.0 5060970.0 4840720.0 4341950.0 4183470.0 4375160.0 5359940.0 5410510.0 5164400.0 6740250.0 5263690.0 True False 5033722.299846632 5001840.438922969 4953258.819094044 4713096.873059153 4932310.692394981 4989419.963741599 5148782.961144646 5549793.752291829 5079205.702222714 4927756.797728262 1.0215038011143776 1.0150339483533075 1.0051751785675662 0.9564386122366937 1.0009241313753183 1.012513435330608 1.0448533019158492 1.1262312610172507 1.0307338431483208 1.0 22.23249962499792 2.1864696824737417 3.4813345931470048 1.0699573576986272 0.9997945916721342 0.2733050790604352 0.03525811473474708 0.214161950806972 5.315212992649286 0.01413984508267961 0.010213272480809537 153.62775440745375 -2.1864696824737417 -0.07016276602649296 ELQNAGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELQNAGDR 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 76.825 0.08096 276420000.0 150470.0 142280.0 142970.0 136240.0 129880.0 116000.0 155020.0 131350.0 176480.0 161530.0 False True 149659.8862387888 147015.70378992378 163098.93328248282 153487.97003099826 146419.44814092756 107981.19303462825 147521.0903660918 141152.00398178544 132988.86871084364 151221.01710720957 0.9896764953821598 0.9721909467497868 1.0785467285070056 1.0149909911145585 0.9682480050846511 0.7140620735150456 0.9755329860101744 0.933415253262808 0.8794337669119097 1.0 17.20629913760149 2.9921642335849747 24.540791176194805 0.899324001855414 1.012512039749635 0.3306333296746272 0.07637883265532312 341.85224333086853 1070650.861001212 0.02241965381161192 0.025699192233924018 982.119272800657 -2.9921642335849747 0.11318803789422105 ELQQAELPNRS(ph)PGFGIK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELQQAELPNRSPGFGIK 17 1 F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 F8VU11 PRPF40B Pre-mRNA-processing factor 40 homolog B 1 ELQQAELPNRS(1)PGFGIK;ELQQAELPNRS(1)PGFGIK;ELQQAELPNRS(1)PGFGIK 223.15 1.8971e-15 1901550000.0 1862190.0 1798720.0 1745890.0 1859390.0 1775360.0 2223980.0 2194010.0 1948230.0 2682300.0 2247110.0 True False 1852164.1759487598 1858589.3078507967 1991696.1364520795 2094788.5833524505 2001441.572616857 2070241.4972857996 2087877.3543678788 2093616.8155114853 2021283.1059785585 2103697.5159523394 0.880432743730407 0.8834869527377929 0.9467597510331436 0.9957651076106082 0.9513922783289539 0.9840965640673895 0.9924798306484196 0.9952081036534901 0.9608240208733279 1.0 21.004495848285313 4.11428731485366 2.746248958081351 0.9826904615691192 0.878790630896013 0.8758746468668975 0.01502217785918796 0.08099217206846145 1.2146271253099603 0.003910092689259919 0.010645595882545354 13010.30011775105 -4.11428731485366 -0.10389983067310626 ELQQELQEYEVVTESEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELQQELQEYEVVTESEKR 18 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 ;;; 321.09 2.0704999999999998e-61 1454430000.0 513719.0 473572.0 441472.0 396303.0 426227.0 589153.0 574273.0 492747.0 677400.0 596935.0 False True 510953.19398354675 489334.5577396804 503627.4202565864 446474.9191661374 480504.4820046439 548426.2398269867 546493.2210541005 529518.2832585676 510463.8466949539 558838.097238235 0.9143134594950948 0.875628487316739 0.901204521927731 0.7989342912958265 0.8598277110656665 0.9813687408523087 0.9779097447988201 0.9475343321714013 0.9134378082268452 1.0 19.092070850272172 2.743165872266855 24.93031440026779 0.9609140191842576 0.8680829250827384 0.6326026008544711 0.035789513070984505 255.84936850573567 1385027.7182191967 0.011430802993015516 0.011755954191277906 553.5614933596138 -2.743165872266855 -0.09283109410151913 ELQREPLTPEEVQSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELQREPLTPEEVQSVR 16 1 Q6FI81-3;Q6FI81;H3BV90;H3BT65;H3BUG4 Q6FI81-3 CIAPIN1 Anamorsin 0 157.47 5.8642e-08 187880000.0 76964.0 101480.0 101240.0 109510.0 113950.0 94851.0 114430.0 90818.0 103370.0 98901.0 False True 76549.63437550428 104857.70045404449 115493.71200614516 123373.95477168681 128460.85706543484 88294.17362523735 108894.58373494957 97595.30032445968 77895.84858703478 92589.05350659392 0.8267676520751196 1.1325064517111285 1.2473797671764735 1.3324896421249244 1.3874302868458013 0.9536135242915006 1.1761064576299445 1.0540695322855766 0.8413073212967586 1.0 16.49855401811855 1.4952491108011365 3.4636492620074804 0.9218827832318688 1.1618408914489824 0.24172291018234904 0.1605942996814313 0.29908230371542116 7.380934771808361 0.11610010697400713 0.0434007663269912 31.278729969141985 -1.4952491108011365 0.2399581082171136 ELQTLHNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELQTLHNLR 9 0 P33176;O60282;O60282-2;Q12840;J3KNA1;A0A0G2JMZ6 P33176;Q12840 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-like protein 0 ; 180.36 4.8737e-05 752070000.0 456040.0 513830.0 561080.0 482030.0 344680.0 417800.0 502690.0 373200.0 633890.0 428480.0 False True 453584.73131080746 530932.5209332053 640075.1870052136 543054.9485763501 388572.95492158056 388918.4693954109 478372.964237716 401050.07907120115 477676.303190825 401134.039559816 1.1307560231202223 1.3235788254614929 1.5956641019734934 1.3537992167712092 0.9686860665028095 0.9695474106914241 1.1925514094058385 0.9997906921868137 1.1908146805865754 1.0 18.613724870458196 3.250444494116181 24.2502076456793 1.0555464669620163 1.366474264091639 0.5566030740127159 0.1297282906884511 113.58834615404427 231785.98709487822 0.03659973386427126 0.04914106856467283 1780.1003849877934 -3.250444494116181 0.3109277971296227 ELREELGEAAAAFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELREELGEAAAAFR 14 1 Q96DE0-3;Q96DE0;Q96DE0-2;Q96DE0-4 Q96DE0-3 NUDT16 U8 snoRNA-decapping enzyme 0 ;; 209.56 5.9035000000000006e-09 217830000.0 124806.0 163358.0 168146.0 185962.0 165473.0 170528.0 195311.0 132335.0 194343.0 178860.0 False True 124134.05836325024 168795.2722780036 191819.4952487681 209504.77013288668 186545.0057146884 158739.8007397337 185863.0607695248 142210.50968351413 146449.77171278038 167445.0016702501 0.7413422743290229 1.0080639648498593 1.1455671613687148 1.251185571639009 1.1140673286984821 0.9480115808553093 1.1099946783454633 0.8492968333779809 0.8746141733223206 1.0 17.35332778584621 1.7335919784880207 10.437156139287053 0.898364069907309 1.054651146523325 0.17839594308853046 0.13362336169557645 0.14551719722628217 69.57655573687977 0.0661361696629872 0.035917066451629516 54.14919173895813 -1.7335919784880207 0.15628707661601604 ELS(ph)APAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSAPAR 7 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU Iron-sulfur cluster assembly enzyme ISCU, mitochondrial 1 ELS(1)APAR;ELS(1)APAR 109.11 0.0074496000000000015 938710000.0 1141630.0 1352960.0 1232090.0 1212620.0 1220700.0 1260070.0 1347160.0 1165460.0 1508030.0 1358730.0 True False 1135483.5909270176 1397992.4557184076 1405557.5624817396 1366137.5676672698 1376148.909344242 1172964.3267857246 1281992.724149039 1252432.5432859662 1136396.2130667127 1272014.6881327224 0.8926654711777517 1.0990379818417164 1.1049853241435867 1.0739951200349085 1.08186558078538 0.9221311182401513 1.0078442773573346 0.9846054098042671 0.8933829331286313 1.0 20.278683899045415 2.746370946777277 24.90231012272063 0.9665095082665136 1.0575370495128535 0.31341732853357884 0.06518713681595027 683.972061731844 2180762.929018007 0.01978459175023779 0.020638483607743317 557.6618649334084 -2.746370946777277 0.09102754124633994 ELS(ph)EESEDEELQLEEFPMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELSEESEDEELQLEEFPMLK 20 0 Q99543;Q99543-2;H7C3L7;F2Z3H0;F2Z3N9 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 1 ELS(0.571)EES(0.429)EDEELQLEEFPMLK 110.96 0.00011283 13174000.0 50369.0 45735.0 41220.0 41279.0 40407.0 50882.0 51144.0 51849.0 59960.0 52164.0 True False 50097.81890052199 47257.2618276087 47023.41770933722 46504.917167568754 45552.591938947175 47364.64710334448 48669.969330946944 55718.23566388722 45183.6614228365 48834.84886015274 1.025862065099986 0.9676954660582294 0.9629069979103881 0.9522895688843809 0.9327886335717984 0.9698944136999698 0.9966237321696652 1.1409523519453553 0.9252339769132476 1.0 15.575623411245765 1.990511970714642 23.45761153263396 1.0454896207981992 0.967354570814851 0.11999049254598959 0.055240466716438626 245.14678117915662 606085.1625109294 0.0210601248082405 0.014676448610977583 97.83899223507188 -1.990511970714642 -0.07813504998334819 ELS(ph)NSPLRENS(ph)FGSPLEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ELS(0.928)NS(0.077)PLRENS(0.995)FGSPLEFR;ELS(0.714)NS(0.287)PLRENS(0.999)FGS(0.001)PLEFR 166.22 1.1565e-11 281350000.0 665190.0 736530.0 701340.0 726530.0 722180.0 811440.0 796750.0 730720.0 885820.0 865050.0 True False 661608.6909495565 761044.955808213 800082.5758434396 818508.6235072006 814145.3423037812 755347.0627243008 758208.158619427 785250.0369209765 667521.5303798707 809841.7683934346 0.81696044433724 0.9397452508753348 0.9879492600519293 1.0107019117215446 1.0053140923058144 0.9327094405401681 0.9362423478398275 0.9696339057427932 0.8242616723808911 1.0 19.627280527799524 4.725118190306308 3.8093558276708155 0.9594896783681546 0.8044632742575238 0.3977797061288503 0.05181878462795335 0.23778846130243608 6.77346449770633 0.012409512628280578 0.10122747431317007 53102.894050329814 -4.725118190306308 -0.15502640411063073 ELS(ph)PAALEK ddPTM_BT-474_Trastuzumab_2h_R1 8 ELSPAALEK 9 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK 179.72 5.189600000000001e-05 5085400000.0 8728790.0 8240880.0 7290950.0 6775050.0 7051450.0 9291940.0 8651830.0 8905100.0 12146820.0 9159940.0 True False 8681795.164499747 8515172.709082834 8317452.38592655 7632770.635338465 7949410.360281357 8649610.058674008 8233307.929699798 9569643.781181563 9153398.970049007 8575344.786980819 1.0124135390661542 0.9929831301956117 0.9699262936406005 0.8900832357115972 0.9270076664847618 1.008660324865997 0.9601139236056951 1.115948573369353 1.0674088561366997 1.0 23.03176324789445 1.752858753919587 24.99999999997399 1.0704088960741573 0.9643162879305324 0.4957335390155482 0.043696012690157465 3.5202103238448283 6163.421206672407 0.020845729856115224 0.011560174000562393 56.605516034435645 -1.752858753919587 -0.10609260814362498 ELS(ph)PAGSISK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSPAGSISK 10 0 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-2;O95453-3;O95453;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 ELS(0.994)PAGS(0.006)ISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK 178.49 2.3189e-06 4436220000.0 7085730.0 6750640.0 6107940.0 5765910.0 5685690.0 6854710.0 7436110.0 6682660.0 8914470.0 7098590.0 True False 7047581.216978606 6975330.9715519445 6967884.860833793 6495873.61480793 6409728.919775105 6380860.031951698 7076396.950601204 7181354.023059904 6717618.316278071 6645551.908791339 1.0604959999869124 1.04962402931867 1.0485035639577267 0.9774769204969416 0.964514160410926 0.9601700685703044 1.0648320933645714 1.0806256758840085 1.0108443073616498 1.0 22.66395758869198 -0.798024043759921 7.389376499212021 1.0000003180351895 1.0263989314055624 0.026589320416443685 0.04178465559051653 0.0 0.0 0.04574475788146461 0.0107821428339068 0.159212058035285 0.798024043759921 0.02639861337037286 ELS(ph)PQHK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELSPQHK 7 0 Q86V48;Q86V48-2;Q86V48-3 Q86V48 LUZP1 Leucine zipper protein 1 1 ELS(1)PQHK;ELS(1)PQHK;ELS(1)PQHK 82.287 0.016038 1479560000.0 1886370.0 1611860.0 1488640.0 1336940.0 1369240.0 1622990.0 1855650.0 1631730.0 2236030.0 1841440.0 True False 1876213.9935154105 1665509.7857100533 1698227.572509165 1506196.4669204552 1543604.5978786862 1510796.5214075116 1765885.1202286044 1753497.97835705 1684990.367766929 1723917.7226639001 1.0883431203527354 0.9661190692653293 0.9850978095897539 0.8737055412325543 0.8954050286654148 0.8763739136418524 1.0243441998495462 1.0171587398309478 0.9774192501270779 1.0 20.717259489959222 2.199324907980229 24.99992552468403 1.0079882946450376 0.9443389907021098 0.17634751370311763 0.06018772772193125 273.5313178549187 174285.15266871435 0.02396402546582026 0.01769890199098587 158.24314582528035 -2.199324907980229 -0.06364930394292778 ELS(ph)TPDKVLIPER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELSTPDKVLIPER 13 1 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 ELS(0.57)T(0.43)PDKVLIPER 107.82 0.00076584 122300000.0 171180.0 151060.0 132540.0 128150.0 136240.0 199620.0 167820.0 157650.0 247710.0 164510.0 True False 170258.38589988605 156087.94078230148 151200.4799416681 144373.7768604846 153589.35644225433 185820.73925493524 159701.90546534344 169414.64353047928 186665.18964394325 154010.83095590305 1.105496183892645 1.0134867776084733 0.981752250820336 0.9374261275287985 0.9972633449801371 1.2065433197236637 1.0369524303850415 1.1000177226430699 1.2120263781797913 1.0 17.232672287804444 2.7835189356766694 24.79430836767931 1.1095607243944798 1.0021632440030341 0.33805916234196765 0.0726008645943705 451.91246786321295 249226.62389941778 0.02171807710074874 0.023035415751738054 607.4617482300149 -2.7835189356766694 -0.1073974803914457 ELS(ph)VEEQIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELSVEEQIKR 10 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 ELS(1)VEEQIKR 66.98899999999999 0.039397 109970000.0 186590.0 150650.0 141560.0 165110.0 139740.0 181520.0 157040.0 154810.0 264110.0 220890.0 True False 185585.420172098 155664.29418015206 161490.41753842248 186012.90907089022 157535.0606961288 168971.94965211843 149443.37524894232 166362.70830925135 199023.62939268444 206792.61108655678 0.8974470567249517 0.7527555910350974 0.7809293411882485 0.8995142916060535 0.7618021740157325 0.8171082552915403 0.7226727031672815 0.8044905832714556 0.9624310479322663 1.0 17.65782511202764 1.1992740792361467 4.570618642749636 0.9933202520678917 0.79980744392539 0.6270318212039063 0.0546911848479162 0.11802154000267812 5.130648113223652 0.04767000138204083 0.012879358578528458 15.822462652551598 -1.1992740792361467 -0.1935128081425016 ELSDDCFQQWGVRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSDDCFQQWGVRPR 15 1 P42785;P42785-2 P42785 PRCP Lysosomal Pro-X carboxypeptidase 0 ; 194.48 4.5673e-08 191750000.0 208908.0 287228.0 219248.0 249034.0 247101.0 236548.0 251658.0 202844.0 253566.0 244329.0 False True 207783.2625398607 296788.2103470072 250116.21266222108 280561.678865969 278567.8476676265 220195.99353409724 239484.34111308143 217981.24930096135 191078.05691032278 228735.71403941896 0.9083988629080134 1.297515832161918 1.093472498217386 1.2265757450435513 1.2178589987028425 0.9626655568799806 1.0469914683800106 0.9529830101800183 0.8353660805124359 1.0 17.803322115415607 2.7275197890665552 24.41891280689961 0.9637201536921457 1.1582794368386835 0.42749249864290184 0.10912499039960184 487.91484911309203 1079115.6232579849 0.03347632886424987 0.03184583225555831 533.9736040662488 -2.7275197890665552 0.1945592831465378 ELSDFISYLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELSDFISYLQR 11 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;; 250.06 3.5274e-16 10513288000.0 3233615.0 4769300.0 4400840.0 4756167.0 4350388.0 4383280.0 4734326.0 3836923.0 5544680.0 4513083.0 False True 3216205.5761283976 4928043.267397271 5020440.019212988 5358297.25453921 4904384.125030133 4080274.1707312525 4505308.564498372 4123253.677760215 4178267.9089054894 4225054.179095255 0.7612223275245927 1.1663858162530243 1.188254589503999 1.268219773618767 1.1607860910508723 0.9657329818206011 1.0663315483123887 0.9759055157591282 0.9889264685832302 1.0 22.01053841093459 2.7387179003973543 24.966417550942047 1.001663924623425 1.125414777100896 0.14702771810646642 0.1289222447004761 25.583436953141888 4061230.4554399536 0.04108581701874551 0.04108873523289471 547.9209426868973 -2.7387179003973543 0.12375085247747108 ELSDFLR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELSDFLR 7 0 E7ETZ4;Q9Y6E2;Q75MG1;B5MCH7;B5MCE7;E9PFD4 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 ;;;;; 135.87 0.0070624 1086342000.0 2250869.0 2377750.0 2371800.0 2155580.0 1847459.0 2335600.0 2424040.0 2125753.0 3167450.0 2553860.0 False True 2238750.571399055 2456891.971369773 2705728.8239448313 2428476.2069834042 2082721.9529025997 2174145.4694110146 2306779.9244679483 2284387.4832150126 2386874.389155496 2390870.4683304485 0.9363746807088135 1.0276140024789497 1.1316919338730422 1.0157288900218906 0.871114508498225 0.9093530988858741 0.9648284819372833 0.9554626708029929 0.9983286090869895 1.0 21.189104539708545 3.45757511971203 24.519484032352814 0.9470565542525174 1.0385063960651193 0.31201137007911917 0.05678041660661734 207.7933705311566 260663.70249260933 0.016121030704452376 0.021830781406086408 2867.973404690428 -3.45757511971203 0.09144984181260185 ELSDIAHR ddPTM_BT-474_Trastuzumab_2h_R1 14 ELSDIAHR 8 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;;;;;;;;;;; 199.29 0.00012911 103634765500.0 43729185.0 54738066.8 50935582.5 49576151.7 46945763.3 62209417.4 60508927.2 46354982.9 58775365.2 56575956.6 False True 43493751.926729225 56559990.263577834 58106869.775980234 55852487.422062695 52924027.98691568 57909026.80035492 57581879.22478697 49814227.109831735 44290963.99600351 52965230.61267459 0.8211755414564581 1.067870178404227 1.0970757439140697 1.0545123050723995 0.9992220816320009 1.0933404071027926 1.0871637592947176 0.9405080754601903 0.83622715286365 1.0 25.658542267594214 1.5934961768423888 5.516698001978753 0.9093757803669322 1.0370841837769214 0.24438124335912448 0.08501483826197746 0.17223626141211165 11.123461040063765 0.04573061026303567 0.021288640491034322 39.218969381442754 -1.5934961768423888 0.12770840340998912 ELSDLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELSDLAR 7 0 P61077-3;P61077-2;P61077;A0A087WY85;D6RA11;D6RGD0;D6R933;D6RIZ3;D6R980;D6R9F6 P61077-3 UBE2D3 Ubiquitin-conjugating enzyme E2 D3 0 ;; 110.63 0.015726 1176270000.0 1434390.0 1765740.0 1645790.0 1547360.0 1411520.0 1586370.0 1550230.0 1381610.0 1904810.0 1664360.0 False True 1426667.4036157113 1824511.5884876316 1877502.926536879 1743255.6173456039 1591268.7052654915 1476707.9758133062 1475239.4524463064 1484712.753873427 1435395.0986463185 1558139.1198697153 0.9156226073927229 1.1709555104682752 1.2049648857374606 1.1188061419646322 1.0212622768874107 0.9477382070586752 0.9467957216616572 0.9528756033014382 0.9212239653968382 1.0 20.571392620814695 3.0347212728286403 2.9312009900185276 0.9510600740087163 1.1147328978346989 0.4703970473247664 0.07382203399987795 0.213605803512586 3.7517628255277304 0.02305966111396793 0.02725464328345952 1083.231480469062 -3.0347212728286403 0.16367282382598258 ELSDQATAS(ph)PIVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSDQATASPIVAR 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 ELSDQATAS(1)PIVAR;ELSDQATAS(1)PIVAR;ELSDQAT(0.001)AS(0.999)PIVAR;ELSDQAT(0.033)AS(0.967)PIVAR 236.27 3.0693e-17 529487000.0 711159.0 767900.0 702998.0 687186.0 729535.0 764050.0 687188.0 645021.0 789640.0 678331.0 True False 707330.1989611924 793459.0872946469 801974.0078318437 774183.6771412323 822436.9579572815 711233.0218802398 653946.0911269117 693155.7423702708 595043.8026338994 635039.3348316125 1.113836828940287 1.2494644721575257 1.2628729652541848 1.219111375748898 1.2950960875130033 1.1199826260665111 1.029772575111922 1.0915162326977248 0.9370188112704572 1.0 19.276486430745162 2.472968201517619 3.4309135401556374 1.0305161899947632 1.2304520266877275 0.7499660281586145 0.05769264191212558 0.1224592013957781 3.064154600457449 0.020465896185908137 0.017659395373509194 297.14484581454684 -2.472968201517619 0.19993583669296422 ELSEALTR ddPTM_BT-474_Trastuzumab_2h_R1 5 ELSEALTR 8 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;;; 175.38 0.00061997 1599840000.0 1561560.0 2178370.0 1977300.0 2160290.0 2075510.0 1918660.0 1939390.0 1760060.0 2058960.0 1897340.0 False True 1553152.734465625 2250875.7285975283 2255686.653000305 2433782.492500476 2339813.895988424 1786027.5502398273 1845574.29651074 1891404.6146035884 1551556.8966504915 1776250.1368055032 0.8743997831627995 1.2672065054112343 1.2699149777728065 1.3701800450681523 1.3172772502618701 1.0055045250844614 1.03902837684219 1.0648301021415738 0.8735013523719631 1.0 20.760403329907565 2.7250260949786718 23.894590233509984 1.0094005755177309 1.2335687307408711 0.4060211882214336 0.13403247740521837 455.1115820013752 803477.0021020012 0.04394308198575411 0.04166683855110623 530.916343863686 -2.7250260949786718 0.22416815522314026 ELSEPMEFQYLPDTDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSEPMEFQYLPDTDDR 17 0 Q04206;Q04206-4;Q04206-2;A0A087X0W8;E9PKH5;Q2TAM5;Q04206-3 Q04206 RELA Transcription factor p65 0 ;;; 348.78 3.060299999999999e-87 707770000.0 278986.0 341935.0 314890.0 305731.0 303322.0 338506.0 329381.0 306815.0 349052.0 349597.0 False True 277483.9703742587 353316.0997709275 359223.77492705424 344436.5132526946 341948.25876965234 315105.8769774133 313447.5826723882 329711.09327500145 263032.8116571704 327285.42015495035 0.8478348049934104 1.0795351030414162 1.0975856326168851 1.052404085368741 1.0448013804212848 0.9627861724736447 0.9577193586075091 1.0074114915320782 0.8036801991748972 1.0 18.320189809362542 2.671730224338743 4.860004218434237 0.9516646425726988 1.0331133854400885 0.1774739447118907 0.08281768029836913 0.3846878747482792 17.934077626080942 0.026845965393735956 0.02546098677415816 469.6023097568261 -2.671730224338743 0.08144874286738968 ELSEQIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSEQIQR 8 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 138.78 0.0016063 259870000.0 281390.0 413220.0 399480.0 403030.0 390110.0 413420.0 406010.0 313870.0 408600.0 412600.0 False True 279875.02750536776 426973.777903235 455723.3116575937 454053.5566764029 439788.1961368748 384841.2484860003 386369.745191181 337292.5731995661 307906.00495949 386267.51475536806 0.7245626847047154 1.1053836048668166 1.1798126796818873 1.1754898854592142 1.1385585878621 0.996307568680035 1.0002646622661957 0.8732097841910964 0.7971315039383879 1.0 18.559240825907732 2.045731478465827 1.8957835739535118 0.8776037347563269 1.0752823790441275 0.2254586358589925 0.13246178877322312 0.45730338077257643 3.102841118779236 0.07745030676027358 0.04122303977745831 111.1044563035376 -2.045731478465827 0.19767864428780058 ELSEYVR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELSEYVR 7 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;C9IZ80 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 0 ;; 139.92 0.006187300000000001 993850000.0 1055320.0 1589010.0 1559170.0 1582890.0 1330740.0 1383280.0 1453540.0 1168320.0 1337560.0 1352630.0 False True 1049638.274377075 1641899.237273169 1778687.5834514138 1783283.7117026332 1500201.851086065 1287657.1094908682 1383226.7171379768 1255505.9710087494 1007936.2603857436 1266303.9953551937 0.8288991255078961 1.2966074839024906 1.4046292122394342 1.408258773757109 1.18470908769838 1.0168625497621406 1.092333848911206 0.9914728024344459 0.7959670537902875 1.0 20.27219235635283 2.7520396000435974 2.7729205014044447 0.9824165320934088 1.2552654268773475 0.35226334744009646 0.16655982903886105 0.31464656655878354 4.843311248636015 0.0582526524275874 0.05863586433192552 564.9884895096824 -2.7520396000435974 0.2728488947839387 ELSFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSFGR 6 0 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 ; 146.66 0.025569 402060000.0 311200.0 433860.0 360160.0 375530.0 358250.0 348770.0 356700.0 327350.0 383480.0 357120.0 False True 309524.5337775703 448300.76782609196 410867.39743316115 423072.0594960415 403871.0139858895 324660.35081627016 339445.05827367376 351778.5192496187 288976.49236873485 334328.2958541859 0.9258101620945852 1.340899868139232 1.228933962599316 1.2654389853994301 1.2080072760638663 0.9710824804307551 1.0153046047341427 1.052194874355007 0.8643494910606346 1.0 18.350905936963073 2.742061260383506 24.452320868892503 0.9923465749152423 1.2079191001760938 0.47855044755455145 0.11046374530003521 190.68218091196397 1331935.5141774546 0.03297441424156289 0.0337222813617098 552.1553192964803 -2.742061260383506 0.21557252526085158 ELSKEDLSPAFDHS(ph)PNK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSKEDLSPAFDHSPNK 17 1 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 ELSKEDLSPAFDHS(1)PNK;ELSKEDLSPAFDHS(1)PNK;ELSKEDLSPAFDHS(1)PNK;ELSKEDLSPAFDHS(1)PNK 230.24 5.1498e-16 1081190000.0 1711170.0 1224640.0 1089430.0 961440.0 993330.0 1766850.0 1793510.0 1478590.0 2783920.0 1918520.0 True False 1701957.250848859 1265401.402089487 1242812.2745046867 1083158.2054213365 1119824.687571818 1644711.8182175285 1706751.069426456 1588929.8939278892 2097860.2186167967 1796078.4110723913 0.9475962966631646 0.7045357231001674 0.6919588069446456 0.6030684399656088 0.6234831846251078 0.9157238392701988 0.9502653441546574 0.8846662173168602 1.1680226240034919 1.0 20.776418904256214 2.5970546006266644 4.56210233932277 0.9737565844990108 0.7070258113887135 0.5980922989180302 0.11110595595973033 0.17353274377959338 5.712945930720305 0.03790932827384781 0.03539281567224382 395.416329707964 -2.5970546006266644 -0.26673077311029736 ELSLAGNELGDEGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELSLAGNELGDEGAR 15 0 P13489;H0YCR7 P13489 RNH1 Ribonuclease inhibitor 0 162.93 3.6464e-06 60361000.0 90878.0 104940.0 85035.0 86494.0 82996.0 89688.0 96275.0 83775.0 125620.0 102840.0 False True 90388.722945495 108432.86446243039 97007.1888625301 97444.13153157041 93565.04864416715 83488.07966284255 91617.81044378455 90026.71590083026 94662.63422175997 96276.66315424633 0.9388435367840058 1.1262632180002792 1.007587775524723 1.0121261823901568 0.9718351839247393 0.8671683970713131 0.9516097405349647 0.9350834662455746 0.9832355123286679 1.0 16.55489851996754 3.2196774104251715 2.8786648307597655 0.9415868576432451 1.0307398669203056 0.28586600554528563 0.05404956319732413 0.27391842342147243 4.657728537840193 0.015446396389847735 0.02023583291781787 1658.3546406822807 -3.2196774104251715 0.08915300927706049 ELSLKAS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSLKASPLR 10 1 Q86W50 Q86W50 METTL16 Methyltransferase-like protein 16 1 ELS(0.013)LKAS(0.987)PLR;ELSLKAS(1)PLR 80.74600000000002 0.013978999999999998 639060000.0 1058410.0 1126330.0 1115880.0 935270.0 763480.0 1041660.0 1176450.0 911180.0 1914250.0 1158350.0 True False 1052711.638160407 1163819.2131691377 1272986.2045971677 1053675.086104606 860704.6524995024 969652.496003888 1119540.619024569 979176.8784782891 1442508.737135839 1084423.1112866707 0.9707572876341248 1.0732150588235467 1.173883322245656 0.9716457304699252 0.7936981825094767 0.8941643588298233 1.0323835847580114 0.9029472613475503 1.3302084049318157 1.0 20.048496334738374 -0.5609138743744255 6.596532840665749 1.0000214634130313 1.0039238821676257 0.0 0.14475468943841005 0.0 0.0 0.13894380925228217 0.0327493699087263 0.27484391463753455 0.5609138743744255 0.0039024187545944056 ELSNS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELSNSPLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ELS(0.059)NS(0.941)PLR;ELS(0.01)NS(0.99)PLR;ELSNS(1)PLR;ELSNS(1)PLR;ELSNS(1)PLR;ELS(0.001)NS(0.999)PLR 168.0 0.00032450000000000003 41813500000.0 13078200.0 14168600.0 13040200.0 12842600.0 12637100.0 13054000.0 13096400.0 12185100.0 13815300.0 12440600.0 True False 13007788.424324607 14640193.28590044 14876146.81254971 14468471.843218558 14246359.779040018 12151607.705810674 12462877.0988936 13094414.036684087 10410704.430535575 11646630.257066475 1.116871415784172 1.2570325461321872 1.2772919277250825 1.2422882433689315 1.2232173139004034 1.0433582450544274 1.0700843783833418 1.1243092420435674 0.8938812515507638 1.0 23.473409261610673 2.744588709000043 6.806145069681426 1.0447567979430128 1.2296628125826803 0.6662675435105105 0.06903811816618978 0.09315156136007705 26.39208391857581 0.021820135682132546 0.022054226194547014 555.378047066187 -2.744588709000043 0.1849060146396675 ELSNS(ph)PLRENS(ph)FGSPLEFR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ELS(0.023)NS(0.977)PLRENS(1)FGSPLEFR;ELS(0.135)NS(0.865)PLRENS(0.894)FGS(0.106)PLEFR;ELS(0.011)NS(0.989)PLRENS(1)FGSPLEFR;ELS(0.069)NS(0.931)PLRENS(1)FGSPLEFR 224.08 1.1670999999999998e-19 1773740000.0 1989070.0 2132890.0 1839760.0 2142840.0 2013490.0 2294970.0 2265210.0 1964260.0 2517560.0 2349660.0 True False 1978361.0681264524 2203881.9542907677 2098782.2165194144 2414123.324289664 2269896.016609762 2136324.125678282 2155633.138357466 2110843.0555101777 1897141.0715756551 2199702.6871548686 0.8993765746976001 1.0018999236398192 0.9541208585938555 1.0974770992402298 1.0319103712809854 0.9711876692033499 0.9799656794280672 0.9596037991117684 0.8624534045687094 1.0 21.068877110913533 -0.566566542986944 7.166730777035941 0.9999986369225469 0.977765002171331 0.01178311909775398 0.06182531102368097 0.0 0.0 0.06004566229941762 0.014152898330918547 0.2712897947666781 0.566566542986944 -0.02223363475121587 ELSNS(ph)PLRENSFGS(ph)PLEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ELS(0.003)NS(0.997)PLRENSFGS(1)PLEFR;ELS(0.016)NS(0.984)PLRENSFGS(1)PLEFR;ELS(0.002)NS(0.998)PLRENS(0.002)FGS(0.998)PLEFR;ELS(0.011)NS(0.989)PLRENS(0.003)FGS(0.997)PLEFR;ELS(0.029)NS(0.971)PLRENS(0.003)FGS(0.997)PLEFR 291.69 8.374399999999997e-50 6853750000.0 3745120.0 4726820.0 4041250.0 5035170.0 4844800.0 4691600.0 4993990.0 4434770.0 5222450.0 5183870.0 True False 3724956.690041953 4884149.346276966 4610222.872825306 5672622.005732389 5461756.562620623 4367280.734838463 4752411.624805567 4765715.056705764 3935447.17474471 4853030.978465608 0.7675526298040817 1.0064121510761912 0.9499677404249598 1.1688822986920047 1.1254320417191066 0.8999078625744266 0.9792666986659428 0.9820079611798704 0.8109256240496918 1.0 22.210454638644514 -3.109794833594948 9.868498601201805 0.9998989655471227 0.9775128276761241 0.0 0.1176785188398472 0.0 0.0 0.0 0.02591717402532961 0.0007766139125727537 3.109794833594948 -0.022386137870998524 ELSNS(ph)PLRENSFGSPLEFR ddPTM_BT-474_Trastuzumab_2h_R1 9 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ELS(0.005)NS(0.995)PLRENSFGSPLEFR;ELS(0.006)NS(0.994)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELS(0.002)NS(0.998)PLRENSFGSPLEFR;ELS(0.001)NS(0.999)PLRENSFGSPLEFR;ELSNS(0.997)PLRENS(0.003)FGSPLEFR;ELS(0.04)NS(0.96)PLRENSFGSPLEFR;ELS(0.031)NS(0.966)PLRENS(0.003)FGSPLEFR 311.26 9.4824e-62 38153968000.0 1887337.0 2653474.0 2341327.0 2558508.0 2497096.0 2472831.0 2657817.0 2337828.0 2850780.0 2717135.0 True False 1877175.7872948546 2741793.2780310945 2670965.490420894 2882414.850470264 2815086.374152433 2301890.013388044 2529248.2378630824 2512288.5966100427 2148243.4674948934 2543725.1180436905 0.7379633019225518 1.0778653945673708 1.0500212744980326 1.1331471431500628 1.1066786871678334 0.9049287586381838 0.9943087875030531 0.9876415414501136 0.844526577284832 1.0 21.278511346761814 2.726392959834551 24.833793966006795 0.953043559884874 1.0321145151364928 0.09612334587025084 0.11131121323926124 1669.4729716546883 3407336.426406999 0.03591243059260298 0.03407941194314451 532.5899411872268 -2.726392959834551 0.07907095525161878 ELSNSVSTYRPFGLGSES(ph)PYK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSNSVSTYRPFGLGSESPYK 21 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 ELSNSVSTYRPFGLGS(0.01)ES(0.99)PYK;ELSNSVSTYRPFGLGS(0.024)ES(0.976)PYK 196.49 5.8238e-22 727890000.0 645650.0 494260.0 433240.0 415600.0 423790.0 568230.0 542600.0 577820.0 762460.0 538120.0 True False 642173.8921384581 510711.14531352057 494236.42621041334 468214.9173875716 477757.1444998748 528949.5975695418 516352.3650667102 620939.8625105086 574561.9494405595 503776.72089228913 1.2747192665056852 1.01376487664803 0.9810624542853469 0.9294095935164879 0.9483509751178489 1.0499683205541266 1.0249627337923577 1.2325695824346552 1.140509129566161 1.0 18.942424932298568 1.7682036923053597 24.99999999999872 1.148054836400462 1.0226642038646137 0.12581287304907063 0.1046093921729351 34.5875707801595 29186.200913859495 0.04826669131698328 0.026770421441927157 58.64131388502323 -1.7682036923053597 -0.12539063253584826 ELSNSVSTYRPFGLGSES(ph)PYKQPSDGMERPSSLMDSSQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEK 40 3 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 ELSNSVS(0.001)T(0.002)YRPFGLGS(0.184)ES(0.812)PY(0.001)KQPSDGMERPSSLMDSSQEK;ELSNSVS(0.001)T(0.001)YRPFGLGS(0.151)ES(0.846)PYKQPSDGMERPSSLMDSSQEK 149.46 1.4292e-13 2511600000.0 987270.0 719140.0 644190.0 629830.0 601790.0 914290.0 980830.0 941850.0 1565520.0 928770.0 True False 981954.6480160097 743076.1401706901 734886.3526001443 709566.4134220748 678424.3894112158 851087.2843071575 933383.5057655384 1012135.6296173937 1179718.5728932463 869495.1034399975 1.1293389049933538 0.8546064690081013 0.8451874538369469 0.8160671757837459 0.7802509602724091 0.9788293009816699 1.0734775872489428 1.1640498326132778 1.3567857578793792 1.0 19.729818377457203 2.1639754706032712 1.9822805647618404 1.1878385397110478 0.8784149400607496 0.5199277512665519 0.1208086394484634 0.2459070693021742 1.908173993532879 0.06132792378239843 0.03716307160566069 145.87318672800419 -2.1639754706032712 -0.3094235996502982 ELSPDIAHLASLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELSPDIAHLASLK 13 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 145.29 4.1731e-05 294140000.0 911200.0 1056500.0 889890.0 892630.0 929540.0 1059200.0 1056900.0 960500.0 1364500.0 1207500.0 False True 906294.2004438371 1091664.9638322636 1015178.7769374608 1005636.8664765838 1047911.4091847682 985979.9970886053 1005773.7092499187 1032177.3873201748 1028237.2583632498 1130436.3162072392 0.8017207050500395 0.9657023117365351 0.8980415458904554 0.8896006365494574 0.9269972966727106 0.8722118910658289 0.889721689607797 0.9130787577519308 0.9095932637878439 1.0 20.108448288631745 0.28442064278451407 0.9354128934761072 1.000698407368225 0.8961615614751228 0.3905727125646613 0.03943127380506604 3.0128110608444922 3.1102770429409676 0.038857093701049894 0.011249323991482388 1.9249552721352834 -0.28442064278451407 -0.10453684589310219 ELSPLISLPS(ph)PVPPLS(ph)PIHSNQQTLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 2 ELSPLIS(0.028)LPS(0.972)PVPPLS(1)PIHSNQQTLPR;ELSPLIS(0.018)LPS(0.982)PVPPLS(1)PIHSNQQTLPR 163.92 5.7903e-12 453210000.0 129784.0 137969.0 121917.0 137489.0 144692.0 128242.0 124482.0 110467.0 143690.0 128565.0 True False 129085.25736435797 142561.21476097833 139081.85387843923 154895.0933029353 163117.66854332516 119376.9323891966 118460.33009258058 118710.60848006001 108279.52484735449 120359.87162996567 1.072494142908507 1.1844580160343512 1.1555500350318786 1.286933021822628 1.3552496054898933 0.9918333309311678 0.984217816854898 0.9862972340567449 0.8996314417835956 1.0 16.876994947512568 2.6299083468832505 7.410777088074403 0.9718587195061763 1.2102352945342087 0.717730646142853 0.0748645858378223 0.15439102618108308 9.37445750590068 0.025649016270584402 0.0241485850589559 426.48950334244023 -2.6299083468832505 0.23837657502803244 ELSPLISLPSPVPPLS(ph)PIHSNQQTLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 ELSPLISLPSPVPPLS(0.996)PIHS(0.003)NQQTLPR;ELSPLISLPSPVPPLS(1)PIHSNQQTLPR 147.54 8.5579e-08 371390000.0 237360.0 295550.0 280520.0 303440.0 241150.0 296290.0 288020.0 256820.0 288180.0 290430.0 True False 236082.08013317492 305387.203086252 320014.77767645 341855.4728875959 271859.0230919671 275808.169691638 274087.3722567522 275985.21250553546 217161.90041415978 271894.50875036715 0.8682855759691989 1.123182680260142 1.1769813930676445 1.257309220619316 0.9998694874031728 1.0143940418629935 1.0080651261272746 1.0150451870983686 0.7986991036054403 1.0 18.05268748906314 2.1968983073031763 1.0612835686159388 0.9316020837311093 1.101363248358047 0.25077039391326184 0.11092210016358689 0.7400262344235706 1.5805037711229974 0.08149622535932811 0.04436619262070986 157.3614349943098 -2.1968983073031763 0.1697611646269378 ELSSTEAQLHDAQELLQEETR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSSTEAQLHDAQELLQEETR 21 0 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;A0A0C4DFM8 Q7Z406 MYH14 Myosin-14 0 ;;; 303.7 2.4345999999999998e-55 510075000.0 430015.0 522095.0 495682.0 531286.0 495297.0 512227.0 552137.0 446520.0 535087.0 555081.0 False True 427699.8470191579 539472.6164619079 565469.7170548206 598546.7531260195 558370.1370946795 476817.95314266015 525428.023941832 479841.5897826168 403221.97864845424 519655.2553512465 0.8230453605825002 1.038135592600264 1.088163183633363 1.1518150677057013 1.074501087682188 0.9175659213152156 1.0111088428937056 0.9233844646837667 0.775941308196542 1.0 18.987195316275166 2.0169608518647664 1.3700351530803192 0.8904661845651082 1.0363752670389872 0.2112728588195224 0.10058502177615279 0.6229305836131155 2.1788753529882356 0.0713678220220854 0.03407293030157213 103.98264296611946 -2.0169608518647664 0.14590908247387901 ELSVEEQIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELSVEEQIKR 10 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ; 99.283 0.0076982 798680000.0 817680.0 1045030.0 882350.0 795740.0 785140.0 903830.0 917380.0 852350.0 1194340.0 955590.0 False True 813277.7017327881 1079813.1918160242 1006577.2104763156 896480.60241094 885122.9251106239 841350.3594869665 873002.8246680773 915956.685145601 900010.9103360679 894603.4280782415 0.9090929860171062 1.2070300179104438 1.1251658320140943 1.0020983312535823 0.9894025635605004 0.9404729884551509 0.9758545488065411 1.0238689640539718 1.0060445579438955 1.0 19.770888761129427 3.6617917221220324 6.119055227760929 0.9903916006068519 1.092792006137033 0.23893373175254562 0.07216960006352288 0.27656954422404395 17.555990010576842 0.01859851670036869 0.02911177725462255 4589.778445829673 -3.6617917221220324 0.10240040553018115 ELSVQDQPSLS(ph)PTSLQNSSSHTTTAK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 ELSVQDQPSLS(0.664)PT(0.189)S(0.147)LQNSSSHTTTAK;ELSVQDQPSLS(0.97)PT(0.029)S(0.001)LQNSSSHTTTAK;ELSVQDQPSLS(0.97)PT(0.029)S(0.001)LQNSSSHTTTAK;ELSVQDQPS(0.001)LS(0.996)PT(0.003)SLQNSSSHTTTAK 252.77 1.0124999999999999e-52 2431030000.0 1002000.0 1418430.0 1661180.0 1600020.0 1551170.0 1705990.0 1581780.0 1484240.0 1460490.0 1547020.0 True False 996605.3433326666 1465641.5850909587 1895059.704764598 1802582.367946254 1748702.3049950923 1588058.926768495 1505263.2584136033 1595001.525618007 1100571.8090633515 1448287.859129543 0.688126560649104 1.0119822353353467 1.3084827666121404 1.2446298963174702 1.20742730388288 1.0965077948819912 1.0393398307697643 1.1013014543784427 0.7599123351933796 1.0 20.46591694775668 1.2598381400891077 24.541134546282095 0.8799562428675767 1.0991683586668537 0.19134916741472408 0.16901494331824013 261.80076812324904 301958.434694989 0.11626448288560551 0.0423600466406441 18.190227893469093 -1.2598381400891077 0.21921211579927702 ELTDEEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 ELTDEEAER 9 0 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 0 186.91 9.5733e-05 1123700000.0 852590.0 1094000.0 896530.0 892250.0 849330.0 1059800.0 875140.0 892720.0 1062300.0 1076500.0 False True 847999.7501716544 1130413.128663034 1022753.6312215455 1005208.7585155456 957487.1411266857 986538.5205008538 832806.1348405468 959339.2995403069 800510.3990907138 1007796.8483619827 0.8414391765066008 1.1216676560363776 1.0148410692927574 0.9974319329826804 0.9500795152147303 0.9789061377839382 0.8263631070033051 0.9519173443532434 0.7943172281118156 1.0 19.942773419075845 2.6485564555536016 1.6590527720247352 0.8947984966564957 1.0016643152397269 0.18660495484839257 0.08580648106114323 0.5327978351983313 2.938052336472241 0.03326046066731645 0.030063847996128934 445.20133253433477 -2.6485564555536016 0.10686581858323119 ELTGEDVLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELTGEDVLVR 10 0 Q16401-2;Q16401 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ; 119.07 0.006184 0.0 113209.0 146962.0 129358.0 143042.0 134202.0 139308.0 146635.0 124802.0 154815.0 147817.0 False True 112599.49532270222 151853.54132959503 147570.4820001079 161151.1025335732 151291.82922242666 129677.96585575852 139541.7048499022 134115.358971715 116662.91766471721 138383.19250749948 0.8136789828475741 1.09734093120713 1.066390212034677 1.1645280009336383 1.0932818247723806 0.9370933240229359 1.0083717705988025 0.969159307149579 0.8430425368195985 1.0 17.078309203838035 2.7326540381056557 24.74720321406419 0.9560253715810254 1.0574399448239753 0.19446142178528458 0.09581965109331912 684.3214430629115 2867141.3982138927 0.030687209212631992 0.029641342244320582 540.3237259595038 -2.7326540381056557 0.10141457324294989 ELTHIYR ddPTM_BT-474_Trastuzumab_2h_R1 6 ELTHIYR 7 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 ;;;;; 167.24 0.0010937999999999998 3580180000.0 2127920.0 2724158.0 2604056.0 2601197.0 2521022.0 2550433.0 2565644.0 2317913.0 3001025.0 2598428.0 False True 2116463.5151541377 2814829.9522417122 2970684.4499394936 2930508.2734932625 2842059.2084319214 2374127.5697834995 2441533.9980081334 2490887.438183724 2261462.60042475 2432594.1004138663 0.8700438411792809 1.15713096227719 1.2212002197300733 1.204684444887326 1.1683244680846636 0.9759653570563129 1.003675046976701 1.0239634461663538 0.9296506145599871 1.0 21.21406418340543 2.7346651470796153 24.69966444093192 0.9925102491552636 1.1359537482914361 0.3416787885551681 0.09465221106631222 332.1201338987634 2105833.4320381396 0.030763810295587155 0.029994873186511055 542.8316320679495 -2.7346651470796153 0.1434434991361725 ELTIGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELTIGSK 7 0 P06703;R4GN98 P06703 S100A6 Protein S100-A6;Protein S100 0 ; 122.13 0.010169 905930000.0 1969890.0 1960470.0 1844980.0 1665370.0 1604680.0 2357250.0 2304550.0 1980940.0 2569350.0 2368210.0 False True 1959284.331115353 2025723.0588208602 2104737.1471463577 1876205.671245765 1809026.4863164732 2194298.855869633 2193070.1122640735 2128767.8018094986 1936168.1200261023 2217068.8102734103 0.8837273439761812 0.9136942657954973 0.949333253615525 0.8462550474535746 0.815954145371511 0.9897297033370068 0.9891754834590013 0.9601721840771273 0.8733008696231367 1.0 21.080222116570287 2.7173123864358386 24.998170593632942 0.9622960242571055 0.8853430333993424 0.42352865936525474 0.04697360401792854 884.9433081092386 1041119.2940737518 0.015927262722212246 0.015028830019097873 521.569739420714 -2.7173123864358386 -0.07695299085776308 ELTIPASANVFYAMDGASHDFLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELTIPASANVFYAMDGASHDFLLR 24 0 O15211 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 0 ; 134.34 3.5659e-05 259560000.0 193178.0 216800.0 212550.0 202762.0 191989.0 228672.0 229690.0 210258.0 235830.0 218370.0 False True 192137.95111209332 224016.05694163244 242475.19248228124 228431.6484103435 216437.66114204272 212864.4428759872 218579.01719899112 225948.51962849047 177712.85646009914 204433.4396440371 0.9398557860526492 1.0957896972808994 1.1860838075438298 1.1173888616661367 1.0587194615465434 1.0412408226688858 1.0691940495624617 1.105242469245324 0.8692944597006034 1.0 17.641271674933385 1.248644459760741 24.99904035421316 0.9346472195651657 1.081294458378259 0.42260057270494655 0.06623780596840989 161.60272334761578 400638.92474502727 0.04519032667272122 0.016084113871057588 17.72737614368486 -1.248644459760741 0.14664723881309338 ELTNDGELILTMTADDVVCTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELTNDGELILTMTADDVVCTR 21 0 P29373 P29373 CRABP2 Cellular retinoic acid-binding protein 2 0 170.45 1.9038e-11 21675000.0 23468.0 29678.0 30654.0 28051.0 25445.0 31174.0 33049.0 27033.0 28792.0 32091.0 False True 23341.65089553991 30665.814289270147 34969.81675065557 31602.25372386618 28685.26992566911 29019.01475570262 31450.29361055972 29050.33973079257 21696.59739303384 30042.92490551263 0.7769433558467175 1.0207333136076648 1.1639950790623217 1.0519033623809186 0.9548094939452981 0.9659184266169061 1.0468452625526101 0.9669611005638825 0.7221865867345257 1.0 14.874737656491494 1.4336505471222851 10.713836881920413 0.8552854409521781 1.0031671736372902 0.18713128930125955 0.11136474876120873 0.5608586791067222 130.96022082273046 0.06573950762813166 0.02698985294872438 27.142543787474253 -1.4336505471222851 0.14788173268511218 ELTPAS(ph)PTCTNSVSK ddPTM_BT-474_Trastuzumab_2h_R1 6 ELTPASPTCTNSVSK 15 0 R4GMW8;A0A1W2PS85;P28715;A0A494C0S2;A0A090HNM7 R4GMW8 BIVM-ERCC5;ERCC5;ERCC5-201 DNA repair protein complementing XP-G cells 1 ELTPAS(0.679)PT(0.321)CTNSVSK;ELTPAS(1)PTCTNSVSK;ELTPAS(1)PTCTNSVSK;ELTPAS(0.999)PTCTNSVSK;ELTPAS(0.999)PT(0.001)CTNSVSK;ELTPAS(1)PTCTNSVSK 364.72 2.2630999999999987e-97 4920430000.0 3172370.0 3202280.0 2868120.0 2754430.0 2842900.0 3684310.0 3536740.0 3147430.0 4111190.0 3522850.0 True False 3155290.312403439 3308865.9539808645 3271926.36585406 3103140.5555819273 3204926.4638115405 3429622.321632856 3365654.3745411662 3382307.2089257035 3098042.311623605 3298018.696936374 0.9567229910899172 1.0032890223013493 0.9920884829711389 0.940910540763315 0.9717732852117213 1.0399038443350042 1.0205079727618345 1.0255573178125483 0.9393646902309762 1.0 21.653168146965815 2.7775875091225872 24.15190291807613 1.0094809368367084 0.9739244862185235 0.2177240776326238 0.02982351801979295 521.4241569693918 322683.6293854227 0.009198762103562894 0.009756604554666058 599.2216679366047 -2.7775875091225872 -0.03555645061818491 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(ph)SPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQR 38 1 O00139-1;O00139-5;O00139;O00139-4;O00139-2;H0Y8H2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.5)S(0.5)PQR 161.66 5.5592999999999986e-18 176700000.0 115810.0 103760.0 105130.0 104650.0 98381.0 116130.0 103670.0 47403.0 114270.0 110550.0 True False 115186.49182770049 107213.58887575542 119931.39019365888 117898.6792699939 110909.23720012778 108102.20644061553 98655.08604214124 50940.452567556706 86109.68963955187 103494.60435338334 1.1129709857568524 1.0359340909181465 1.1588178044929953 1.1391770615154748 1.0716426995694104 1.0445202154838862 0.9532389312324194 0.49220394517978955 0.8320210524746728 1.0 16.659196029837474 1.9706351430257443 6.170762109962706 0.7174892474770771 1.088546475927272 0.5531873035143713 0.12531770189338218 0.11108012307428917 13.805761817011392 0.05117023366859985 0.03268339152146942 93.46201565383431 -1.9706351430257443 0.37105722845019495 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(ph)SPQRDDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLK 42 2 O00139-1;O00139-5;O00139;O00139-4;O00139-2;H0Y8H2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.5)S(0.5)PQRDDLK 160.1 5.9901e-20 467210000.0 354370.0 302650.0 278250.0 253740.0 271580.0 354780.0 356500.0 166130.0 463040.0 325110.0 True False 352462.11129420856 312723.5222942114 317425.18140764354 285863.4579834515 306164.1032192261 330254.8936622881 339254.73303774785 178527.4641910468 348929.99641811615 304361.20145932544 1.1580389011616885 1.0274749895676287 1.0429226191961394 0.9392243709540423 1.0059235597417024 1.0850755355111288 1.1146451368016614 0.5865644613540043 1.1464338908674825 1.0 18.215424936991297 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQR 38 1 O00139-1;O00139-5;O00139;O00139-4;O00139-2;H0Y8H2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.186)S(0.814)PQR 230.19 3.3746e-40 228730000.0 70355.0 68749.0 82500.0 67939.0 70605.0 76018.0 82629.0 50190.0 77796.0 82524.0 True False 69976.2164971754 71037.26890535184 94115.28289714495 76540.07043405743 79596.1282413781 70763.05458712402 78631.91959656686 53935.432659655926 58624.218212991786 77257.24766764898 0.9057560113739016 0.9194900290901546 1.2182065209210808 0.9907170232535755 1.0302739308522961 0.9159406621827616 1.0177934364790155 0.6981278040304958 0.7588183631027842 1.0 16.237382661222796 1.752395856931105 24.999999999909424 0.7926854946517278 1.0026601718081607 0.3481168507473015 0.11157500526448118 4.072190164515298 7368.8132242979045 0.050658757839195594 0.028092924521081544 56.54521463792165 -1.752395856931105 0.20997467715643292 ELVEAELFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELVEAELFAR 10 0 Q9UBS8;Q9UBS8-2 Q9UBS8 RNF14 E3 ubiquitin-protein ligase RNF14 0 ; 88.948 0.026068 18717000.0 32944.0 37086.0 37110.0 38107.0 36885.0 34671.0 36802.0 36694.0 38457.0 38351.0 False True 32766.63316442249 38320.38509103961 42334.76543409761 42931.34229280129 41582.08611547671 32274.275376755155 35021.74666270746 39432.29260835652 28979.787647398676 35903.406346057 0.9126329922180489 1.0673189257221563 1.1791294961277932 1.1957456593116855 1.158165487549717 0.8989195917979964 0.9754435644670699 1.098288341453904 0.8071598379294533 1.0 15.131833106200364 2.745853931866753 24.928903327289582 0.9749066775564996 1.1100650988716279 0.32985936439579844 0.10246824700115953 746.6664480439805 2552140.301094516 0.03301723710366594 0.03439104482241631 556.998379760758 -2.745853931866753 0.13515842131512823 ELVEFAQDDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELVEFAQDDDR 11 0 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 162.38 5.8616e-05 362450000.0 189120.0 208300.0 186160.0 169350.0 206400.0 180580.0 142850.0 147230.0 194540.0 193780.0 False True 188101.79893320712 215233.13957999102 212369.709868273 190789.69263615317 232683.81657135373 168096.92963959646 135939.79976000663 158217.05021879126 146598.22370244534 181412.7944965951 1.0368717347371965 1.1864275624949412 1.170643506471419 1.0516881853100724 1.282620761214948 0.9265990863877654 0.7493396490431001 0.872138322205057 0.808091976694603 1.0 17.468916682816257 2.5562256924451328 5.760431321792975 0.8447657877708928 1.1428294289284666 0.7119339532964353 0.08794037105729226 0.10782357986848014 6.0475779312769875 0.026690896919573343 0.024919735748335784 359.93633685868434 -2.5562256924451328 0.2980636411575738 ELVEFAQDDDRLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELVEFAQDDDRLR 13 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ;;; 274.24 3.3307e-32 4095880000.0 2270550.0 2822890.0 2475360.0 2692480.0 2439120.0 2508500.0 2296100.0 2170320.0 2779310.0 2623380.0 False True 2258325.6110818177 2916848.1871769605 2823869.1717851753 3033347.6919338056 2749727.474203107 2335093.299373837 2185028.8710462083 2332280.2990616527 2094386.2913459595 2455953.6424113824 0.9195310416626906 1.1876641874693725 1.1498055675890342 1.2350997346006531 1.1196170101579288 0.9507888337343052 0.8896865288144583 0.9496434536816823 0.8527792443547846 1.0 21.227851898560605 2.717541924285486 4.153014748458387 0.9216013447640207 1.135260477441652 0.5645694252104088 0.08502684684232688 0.14818299678006974 6.100432922096616 0.027153989211192515 0.026639067841363537 521.8454777614553 -2.717541924285486 0.21365913267763126 ELVEPLT(ph)PSGEAPNQALLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ELVEPLTPSGEAPNQALLR 19 0 P00533;E9PFD7;Q504U8 P00533 EGFR Epidermal growth factor receptor;Receptor protein-tyrosine kinase 1 ELVEPLT(0.993)PS(0.007)GEAPNQALLR;ELVEPLT(0.998)PS(0.002)GEAPNQALLR;ELVEPLT(0.997)PS(0.003)GEAPNQALLR;ELVEPLT(0.945)PS(0.055)GEAPNQALLR 283.22 9.286e-39 474756000.0 496733.0 677970.0 796850.0 625250.0 743110.0 1130500.0 737000.0 469928.0 648560.0 695200.0 True False 494058.6447202244 700535.8216084797 909039.5536556375 704406.5858916725 837740.6537419517 1052351.195910752 701348.4943865922 504996.4136060327 488731.0782587531 650831.7408093351 0.7591188532167206 1.0763700933475302 1.3967351262327967 1.0823175050063092 1.287184691853209 1.6169328106249268 1.0776187613628638 0.7759246852005859 0.7509330716584237 1.0 19.311925086835647 1.8933691628226084 4.781049861213464 0.8294162456284476 1.214362582040039 0.34534638406018325 0.22034245183106954 0.24611122609803182 8.51764474466856 0.10526537744341717 0.06150796614948299 78.22924932048815 -1.8933691628226084 0.38494633641159137 ELVFDIDMTDYDDVRR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELVFDIDMTDYDDVRR 16 1 A0A5F9ZHB6;P49642;F8VSB2;F8VNY2 A0A5F9ZHB6 PRIM1 DNA primase small subunit;DNA primase 0 ; 142.1 2.4706e-06 66343000.0 44680.0 55681.0 46760.0 46213.0 44709.0 48448.0 50325.0 42740.0 57117.0 57004.0 False True 44439.447844414695 57534.308425124735 53343.40155479399 52063.561061674336 50402.42613899547 45098.9037943248 47890.58748983078 45929.475829322444 43041.2806785883 53365.95591642026 0.8327302880887972 1.078108832440532 0.999577364234577 0.9755950243487499 0.9444677842543258 0.8450875285539154 0.8973995999403667 0.8606512343047963 0.8065306793341794 1.0 15.70363206727843 2.938951579413106 3.5801429659932444 0.8739125583525299 0.980146718214598 0.2454801321710136 0.07339570968623634 0.2800059092912377 7.104151221573649 0.02169287084415566 0.02398733792844089 868.8635520975317 -2.938951579413106 0.10623415986206808 ELVGHK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELVGHK 6 0 K7ER00;Q9Y285;Q9Y285-2 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 ;; 91.26 0.048095 1156300000.0 860420.0 908210.0 883310.0 838710.0 870310.0 858110.0 1004690.0 871350.0 1248880.0 1009670.0 False True 855787.5943216484 938439.2208254611 1007672.3701318452 944890.6000051261 981138.8197684838 798790.8754736622 956089.3064114881 936374.561625647 941110.2581346246 945231.9961780244 0.9053730700843413 0.9928136421745885 1.0660582525838036 0.9996388228770516 1.0379873128878898 0.8450738852509372 1.0114863972838037 0.9906293538642451 0.9956394429515021 1.0 19.850308939916665 ELVGPPLAETVFT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 ELVGPPLAETVFTPK 15 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK 200.33 7.7915e-08 402963000.0 511913.0 365944.0 290327.0 284060.0 283304.0 430237.0 336989.0 377778.0 596230.0 399723.0 True False 509156.9172868811 378124.2248221805 331202.51803247805 320021.9668746723 319381.08512563375 400495.72885896 320687.5546470062 405969.71267781465 449297.10557267844 374212.33591992204 1.3606096550377642 1.0104536610014256 0.88506574006516 0.8551881810308734 0.8534755657920864 1.0702365753775214 0.856966817672281 1.0848645907939507 1.2006474999499317 1.0 18.51349759228102 -1.6623588758484493 7.276911160525119 0.9999801609957858 1.0056821190811267 0.0 0.16028873222974563 5.154027840589586e-05 2.3914418750692835e-06 0.1550474089856376 0.0364178621100777 0.021759109822253493 1.6623588758484493 0.005701958085340908 ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 ELVGPPLAET(0.037)VFT(0.963)PKT(0.867)S(0.133)PENVQDR 84.365 0.06373999999999999 41980000.0 51721.0 34729.0 30807.0 33207.0 32947.0 42756.0 44145.0 39952.0 71502.0 50062.0 True False 51442.53988274334 35884.93377087619 35144.357820755744 37411.00279520956 37142.6051578314 39800.378356798 42009.537699723376 42933.421112145326 53881.29017771275 46867.00029976545 1.097628172353945 0.7656759242399342 0.7498742739234289 0.798237620413628 0.7925108268134089 0.8492196663373223 0.8963564433615696 0.9160693203648493 1.1496637257149653 1.0 15.51628483830613 1.487106378285318 2.578843428972002 1.0724521695409672 0.8375885843140121 0.4251911388473931 0.10078301968181602 0.230975786334381 3.0485768432268174 0.07715322291260743 0.026261922879932495 30.697738222230353 -1.487106378285318 -0.23486358522695516 ELVGPPLAETVFT(ph)PKTS(ph)PENVQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 ELVGPPLAET(0.001)VFT(0.999)PKT(0.191)S(0.81)PENVQDR;ELVGPPLAET(0.038)VFT(0.962)PKT(0.48)S(0.52)PENVQDR 119.75 0.00065899 118668000.0 82247.0 65696.0 57862.0 65076.0 57410.0 78093.0 71672.0 65662.0 131182.0 79709.0 True False 81804.19129050078 67882.65164592939 66008.46665448016 73314.61492760746 64720.82320427048 72694.61472114857 68204.95154637165 70562.03186487997 98853.9538487416 74621.90337769169 1.0962490580876316 0.909688021522954 0.8845722725723647 0.9824811698588346 0.8673167029349569 0.9741726146170738 0.9140071273866971 0.9455941040224736 1.3247310692197394 1.0 16.187311538934047 1.30106025465569 13.728756920866065 1.1622740985685618 0.9415034130286433 0.45189071313979656 0.09484025521149754 0.8254610161185172 180.2817488443949 0.056791585277542314 0.02075792622140109 20.001393526610407 -1.30106025465569 -0.22077068553991852 ELVHYQQSPGEDTSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELVHYQQSPGEDTSLR 16 0 Q9ULV0;A0A0A0MR36;Q9ULV0-2 Q9ULV0 MYO5B Unconventional myosin-Vb 0 170.91 5.106899999999999e-09 212130000.0 111070.0 143640.0 139580.0 148900.0 130150.0 145550.0 137820.0 114280.0 145390.0 136620.0 False True 110472.0114610371 148420.97056778622 159231.65074889088 167750.72473293895 146723.83104051228 135488.47108784615 131153.1200764725 122808.15390208157 109560.5826261875 127900.79463373328 0.8637320180644177 1.1604382208321389 1.2449621693506994 1.3115690579821888 1.1471690340992964 1.0593247014284901 1.025428500675487 0.9601828843500512 0.8566059572963073 1.0 16.964665701991663 2.2205590852708434 1.5509008295062061 0.9351391720372605 1.15867780256168 0.3742237090976368 0.11456647635242273 0.41440076302889184 1.9583953969457644 0.0678018364121279 0.04013816393390656 166.17247381513508 -2.2205590852708434 0.22353863052441947 ELVLDNSR ddPTM_BT-474_Trastuzumab_2h_R1 5 ELVLDNSR 8 0 P39687;H0YN26;H7BZ09 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ;;;; 122.52 0.0032269 1836520000.0 2268760.0 2939010.0 2803670.0 2672770.0 2459370.0 2719790.0 2634130.0 2297630.0 3238960.0 2691860.0 False True 2256545.248242934 3036833.1711809407 3198402.366063497 3011142.4079547212 2772556.1916719545 2531777.318996996 2506707.068546211 2469090.8177287355 2440761.7078404045 2520063.1901827087 0.8954320102105577 1.2050623107433927 1.2691754629500411 1.1948678190630642 1.1001931231220197 1.0046483472557044 0.9947000846294138 0.9797733752659283 0.9685319468768738 1.0 21.265028478851054 2.8199290331854048 2.7945263291009494 0.9855847276091565 1.1544288545032353 0.3779740254617592 0.09244807317034937 0.2777069538986202 4.245225870182786 0.031147324338935703 0.032680950156471524 660.5854948082555 -2.8199290331854048 0.1688441268940788 ELVSDANQHVK ddPTM_BT-474_Trastuzumab_2h_R1 6 ELVSDANQHVK 11 0 P30153;B3KQV6;C9J9C1 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ;;;;; 167.11 1.9624e-05 4399850000.0 5660980.0 6283260.0 6297950.0 6257850.0 6293340.0 6686210.0 6786780.0 6068950.0 7510880.0 6942860.0 False True 5630501.912674002 6492394.5107891215 7184646.617237277 7050093.168368176 7094759.545451379 6224008.040345369 6458477.523382689 6521845.866503661 5659924.264635657 6499760.730718499 0.8662629511981426 0.9988666936777282 1.105370938238071 1.0846696456146074 1.0915416488980676 0.9575749474792362 0.9936485035301835 1.0033978382743822 0.8707896335147087 1.0 22.63195517993305 2.7096078102108945 24.64319668393901 0.9708444444394706 1.034946841040126 0.15871539822874137 0.07280642702622313 1205.8422459341696 1026351.4406916617 0.024671629885218913 0.023264562019843157 512.3984533891698 -2.7096078102108945 0.06410239660065531 ELVSEFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELVSEFSR 8 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 ; 170.66 0.0006837000000000001 653230000.0 290650.0 429570.0 441960.0 359180.0 428410.0 541790.0 398750.0 296060.0 397880.0 369230.0 False True 289085.1726942509 443867.9777694509 504184.12641481473 404652.1511724454 482965.47411498916 504337.3325364768 379460.93912707473 318153.50056221813 299827.8053188493 345665.42528629315 0.8363149784356351 1.2840971219549155 1.45858998190875 1.1706468786610555 1.3972050392803357 1.4590332027531119 1.0977694364797719 0.9204088036826692 0.8673931014955302 1.0 18.3990167816456 1.9750263779575092 4.209150688487031 0.9328013130237891 1.2796095973802466 0.4352552462240785 0.17242606658664494 0.19671471301339857 7.825132799486384 0.07820790295276678 0.0480633201085715 94.41182179169788 -1.9750263779575092 0.3468082843564575 ELVSSSSSGSDS(ph)DSEVDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELVSSSSSGSDSDSEVDKK 19 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 ELVSSSSSGS(0.045)DS(0.955)DSEVDKK;ELVSSSSSGS(0.001)DS(0.999)DSEVDKK;ELVSSSSSGS(0.004)DS(0.996)DSEVDKK 243.48 1.1296e-24 988130000.0 703320.0 487580.0 419254.0 401337.0 457140.0 649720.0 566400.0 537918.0 1126020.0 575340.0 True False 699533.4032661979 503808.8055516654 478281.3189789048 452146.22304999037 515354.06931893714 604806.3856763678 539001.0681418815 578060.1726522573 848527.4588949698 538621.3086266447 1.2987481038391158 0.9353673861070539 0.887973259354346 0.8394510499461206 0.9568022301846293 1.122878683018463 1.0007050584690107 1.0732218785145584 1.5753692720744963 1.0 19.038911780477445 1.428374200347099 8.64725986450005 1.3014331385346554 1.000628558249449 0.2805883733817637 0.17739959215552015 0.2803215971835988 41.91893535302751 0.10593867028800968 0.04185036414817695 26.81477766439301 -1.428374200347099 -0.3008045802852064 ELVTQQLPHLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELVTQQLPHLLK 12 0 Q99584 Q99584 S100A13 Protein S100-A13 0 123.84 0.00023339 0.0 846820.0 903390.0 833510.0 813140.0 858410.0 1027300.0 991290.0 876350.0 1229400.0 930770.0 False True 842260.8152105461 933458.7900392126 950860.9630012035 916083.4406268782 967723.4253053092 956285.1690040845 943337.5156044576 941747.6870151327 926430.8431159987 871367.4617277118 0.9665965877823184 1.0712573409482018 1.0912284481174856 1.0513170170601795 1.1105801717527377 1.0974533833384155 1.0825943784199223 1.080769857010582 1.063191918228286 1.0 19.732921716126295 4.736943817053698 5.0283984977034235 1.0774522593527105 0.9613435934479295 0.5318052531807925 0.029344776290557248 0.1097496907949372 8.82603191084397 0.006381753824833934 0.044340627099921016 54568.72631384116 -4.736943817053698 -0.11610866590478097 ELVVNCCTEFIHLISSEANEICNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ELVVNCCTEFIHLISSEANEICNK 24 0 Q01658 Q01658 DR1 Protein Dr1 0 ; 287.14 7.1182e-53 344160000.0 221414.0 230347.0 192414.0 186534.0 181516.0 238687.0 224459.0 224047.0 271580.0 236241.0 False True 220221.93162540795 238013.96064729805 219504.2187075304 210149.18527423797 204630.98667037723 222187.12949876173 213601.0606533519 240766.52482761352 204652.747985556 221163.89712390417 0.9957408713142339 1.0761881289962705 0.9924957082147818 0.9501966098766321 0.9252458892770161 1.0046265796007579 0.9658043805119092 1.0886339405238787 0.925344283795569 1.0 17.754756373159083 -3.051157031692937 10.430474741178681 1.0000000926073962 0.9971545661675365 0.0 0.053120494370047226 0.0 0.0 0.0 0.012020416442696101 0.0008888796596731599 3.051157031692937 -0.0028455264398596913 ELWAVLNGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELWAVLNGWR 10 0 C9J0K6;P30626-3;P30626-2;P30626 C9J0K6 SRI Sorcin 0 ; 168.27 1.1608e-05 573050000.0 371610.0 470500.0 497090.0 421510.0 295260.0 376390.0 504520.0 366150.0 630670.0 445650.0 False True 369609.2930497525 486160.3080767443 567075.9512162643 474873.12278160657 332859.61085687036 350371.04522675625 480114.4401464368 393473.9722720271 475249.82904503524 417208.2354598392 0.885910827341114 1.165270161891477 1.3592156218854203 1.1382160811332263 0.7978260795595241 0.8397989671526588 1.1507789140769562 0.9431117097637043 1.1391190025796678 1.0 18.670408110577817 3.44059345021055 24.974834039870668 0.977987080928412 1.1578244281424381 0.2091212931137859 0.14954135657788933 240.96660293636782 164753.25272987437 0.04228633690083254 0.05725609979793546 2757.994845728973 -3.44059345021055 0.1798373472140261 ELWDSIMTR ddPTM_BT-474_Trastuzumab_2h_R1 3 ELWDSIMTR 9 0 A0A499FI31;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 ;; 127.68 0.0010205 143053000.0 384861.0 450129.0 421957.0 422372.0 407044.0 464999.0 431201.0 408238.0 550612.0 456279.0 False True 382788.9511380771 465111.27165627334 481364.8778840081 475844.25189322315 458878.64066119265 432854.71361990663 410342.16028221615 438702.79255056044 414921.05042279616 427158.8835798944 0.8961278012762703 1.088848411060332 1.126898904337021 1.113974846795438 1.074257514710836 1.0133342188561716 0.960631221908012 1.027024859869283 0.9713506294085786 1.0 18.704413260717523 2.6334987700183516 4.251841913202167 0.9940039579340026 1.0682424876451309 0.2177220156416031 0.06200550436304237 0.3485818939305731 10.776517206379449 0.02097161838965496 0.019708031021031303 430.03001572472556 -2.6334987700183516 0.07423852971112821 ELWNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ELWNLR 6 0 Q92466-4;Q92466 Q92466-4 DDB2 DNA damage-binding protein 2 0 ; 126.16 0.040975 59469000.0 92033.0 121628.0 119318.0 116770.0 109674.0 131194.0 125425.0 97405.0 122429.0 120938.0 False True 91537.50455382763 125676.31445432131 136116.93726935226 131553.07002730202 123640.33381127274 122124.86757745726 119357.71357997072 104673.85571256785 92258.0134145506 113219.63329976908 0.8084949746433627 1.110022270797954 1.2022379273121164 1.1619280701871901 1.0920396949521378 1.0786545055671573 1.0542139212193877 0.9245203562479772 0.8148587901736188 1.0 16.788764630558713 1.7456450898953229 3.0699289454050054 0.8961147678833609 1.0862166371169037 0.3155523761026928 0.107031456655924 0.251052316105305 4.915083311150755 0.062306227240940454 0.02948071793902929 55.67305967698297 -1.7456450898953229 0.1901018692335429 ELYDKGGEQAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ELYDKGGEQAIK 12 1 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 77.185 0.026544 224330000.0 565950.0 514620.0 518870.0 484490.0 505040.0 605470.0 557030.0 596390.0 854610.0 613640.0 False True 562902.9880829563 531748.8156056408 591922.3859011105 545826.384324121 569353.8503933944 563615.2840230728 530084.3308387569 640895.6502070578 644002.8166872965 574476.969836364 0.9798530100228309 0.9256225114770151 1.030367476819333 0.9501275298809561 0.9910821151900503 0.9810929134088959 0.9227251198420502 1.1156159147504427 1.1210246023800334 1.0 19.13188953237548 1.7175682482837784 8.841202907259193 1.0872265517494666 0.9701031033039439 0.575843371157898 0.04307229995283366 0.06808613226969415 13.93973209240001 0.019420049655801463 0.010385887635373122 52.18771094684424 -1.7175682482837784 -0.1171234484455227 ELYLLDDPLAAVDADVANHLLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ELYLLDDPLAAVDADVANHLLHR 23 0 Q5T3U5-2;Q5T3U5 Q5T3U5-2 ABCC10 Multidrug resistance-associated protein 7 0 52.169 0.06963 3015700.0 4262.3 3495.4 4757.0 3646.9 5706.5 6209.0 4485.8 1159.4 4636.1 4496.1 False True 4239.35225038605 3611.742275986078 5426.744251414779 4108.597166074919 6433.188949924574 5779.786444413854 4268.804716579887 1245.9203153139097 3493.595275557244 4209.15504869513 1.0071741718567202 0.8580682427238563 1.2892716444591679 0.9761097223892038 1.528380132235545 1.3731464813123555 1.0141714114102898 0.29600247577008465 0.8299991887065992 1.0 12.03931493852343 1.9648840395908076 10.804110416628527 0.6362570225188766 1.172349627156195 0.3960111823072714 0.2511840935449352 0.7059466806203222 214.9531649935067 0.10478332627820738 0.06760413577761716 92.23251254323154 -1.9648840395908076 0.5360926046373184 ELYLSHNGIEVIEGLENNNK ddPTM_BT-474_Trastuzumab_2h_R1 3 ELYLSHNGIEVIEGLENNNK 20 0 Q15435;C9JD73;H7C003;C9J177;Q15435-2 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 0 ;; 217.42 1.0592e-24 322940000.0 340283.0 314051.0 265224.0 285505.0 294735.0 378604.0 356324.0 318453.0 427325.0 363948.0 False True 338450.95413699554 324503.9976871617 302565.2338316656 321649.90372651303 332267.7552187891 352431.9966179523 339087.2468301331 342217.57993156865 322016.47961163474 340720.5270484412 0.9933389017353716 0.9524051881999646 0.8880158658261557 0.9440285459548587 0.9751914805284088 1.034372656296831 0.9952063932500437 1.0043937854173213 0.9451044303117457 1.0 18.378229341092972 3.10808386119154 3.8902008911494903 0.9973372725751943 0.9410529376909862 0.3677426527555915 0.03146237961811841 0.2312580509707187 6.5669442433991225 0.009589545394398059 0.011660403035367585 1282.5782214320097 -3.10808386119154 -0.05628433488420814 EMDEAATAEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EMDEAATAEER 11 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 79.986 0.09114 78316000.0 156560.0 286570.0 127490.0 111220.0 127050.0 128140.0 146900.0 140460.0 488570.0 165120.0 False True 155717.09835545134 296108.30921477685 145439.48383705487 125300.44059635646 143229.06441565175 119281.98340911457 139793.88578750417 150941.83844142788 368168.4700025889 154581.90023365567 1.007343667790859 1.9155432089216093 0.940857135390484 0.8105764025863357 0.9265577936301486 0.7716426258754479 0.9043354078077774 0.9764522121495096 2.38170490494741 1.0 17.23801188055714 -0.8982894272544057 8.322023887319492 0.9999323384761835 1.140773635718166 0.0056642963496612575 0.5071517901568624 0.0 4.2884992597139526e-10 0.47900953639992433 0.11290362963927271 0.1263893768903613 0.8982894272544057 0.14084129724198247 EMDEEDKAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EMDEEDKAFK 10 1 Q9Y2S6 Q9Y2S6 TMA7 Translation machinery-associated protein 7 0 ; 162.38 6.1887e-06 1178330000.0 2693700.0 2333000.0 1736470.0 2006420.0 1785450.0 3386300.0 3423600.0 2911700.0 5541900.0 3124800.0 False True 2679197.418498203 2410652.4946717173 1980949.8823321857 2260432.5662771207 2012816.4743087415 3152213.0514927767 3257987.3885779376 3128985.839313011 4176173.0026553962 2925372.588724128 0.9158482679523254 0.8240497309517415 0.6771615656644124 0.7726990315660904 0.6880547394431598 1.0775424175515307 1.1136999782987904 1.0696025017031034 1.4275696089969834 1.0 21.48018895390804 2.6348051783601503 4.604682021088227 1.1414459615930204 0.7732389312334947 0.6898806844816556 0.12188312770021545 0.13211849678324256 4.586303160025949 0.039949016098103876 0.03755636618619788 431.32554362842876 -2.6348051783601503 -0.3682070303595256 EMDEQIR ddPTM_BT-474_Trastuzumab_2h_R1 3 EMDEQIR 7 0 P06753-2;A0A087WWU8;P06753-6;P06753-3;J3KN67;A0A2R2Y2Q3;A0A494C0P6 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;; 180.01 0.0016116 4149000000.0 4746500.0 5537900.0 4975800.0 5023900.0 4896300.0 5611300.0 5517800.0 4889500.0 6111200.0 5620900.0 False True 4720945.371385724 5722225.65376875 5676349.389571078 5659925.224887924 5519814.782356201 5223404.0385794 5250882.93395704 5254379.318377918 4605176.645884564 5262169.349705394 0.8971481261145708 1.08742711864435 1.0787089909770524 1.0755878134565924 1.0489618283883682 0.9926332072288466 0.9978551781597478 0.9985196159967917 0.8751479361154326 1.0 22.327226248091886 1.9985010878515879 1.204693734754085 0.9500449255367205 1.0421315921130838 0.23541818101645906 0.060521558168289816 0.6435454629541135 1.7283576894469985 0.044353538619829797 0.020604259611399063 99.65545763721504 -1.9985010878515879 0.09208666657636333 EMDLVGLGLHPLFSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EMDLVGLGLHPLFSSR 16 0 Q8TDD1-2;Q8TDD1;H0YHH7 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 0 ; 126.63 7.0583e-05 522650000.0 1823780.0 2220200.0 1983410.0 1854440.0 1982510.0 2246900.0 2168630.0 2020080.0 2553300.0 2274100.0 False True 1813960.971121009 2294098.01486076 2262656.887891229 2089211.9138599809 2234970.897242611 2091577.0916336752 2063725.081928895 2170828.6273583937 1924073.4274671178 2128964.9910450378 0.8520388915510518 1.077564931556091 1.0627966628894945 0.981327510150581 1.0497922261021015 0.9824384620843342 0.9693560441855277 1.0196638443983086 0.9037600127574923 1.0 21.021720795459622 2.5154036441313266 24.093262360064607 0.9789982138554285 1.011224030775 0.04310644011859899 0.0652921086790617 1186.727077520381 746872.07070079 0.020366282431696563 0.01919675381117463 327.6450749182652 -2.5154036441313266 0.03222581691957149 EMDRETLIDVAR ddPTM_BT-474_Trastuzumab_2h_R1 5 EMDRETLIDVAR 12 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ;;;; 220.53 2.6758e-11 5824970000.0 2466450.0 3346230.0 3165830.0 3579820.0 3377520.0 3294890.0 3508600.0 3008060.0 4224450.0 3561730.0 False True 2453170.907248354 3457607.2427112525 3611551.3461123477 4033024.844952787 3807627.151870542 3067122.0096367775 3338875.6138464035 3232536.7118191808 3183390.902229849 3334417.3420495316 0.7357120167028909 1.0369449556023485 1.0831131725977867 1.2095141163324952 1.1419167912347012 0.9198374693407578 1.0013370467279694 0.9694457472537829 0.9547067975219764 1.0 21.669003255419295 -0.3519020231283183 7.779947950481127 1.000000583607398 1.013181441459269 0.0 0.12318653520280023 0.0 0.0 0.12163315842951763 0.028669210380883204 0.4447315876361779 0.3519020231283183 0.013180857851871064 EMDT(ph)ARTPLSEAEFEEIMNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EMDTARTPLSEAEFEEIMNR 20 1 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 EMDT(0.585)ART(0.415)PLSEAEFEEIMNR 82.302 0.011194 92533000.0 69782.0 102410.0 73772.0 81778.0 85757.0 89307.0 91825.0 82843.0 103470.0 103910.0 True False 69406.30146550908 105818.65494184778 84158.45636228102 92131.08641511279 96677.64562843791 83133.41729606506 87383.07394443543 89025.16532823014 77971.2049269662 97278.37483817319 0.7134813012755351 1.0877921749605883 0.8651301638445572 0.947087022869953 0.9938246376881336 0.8545929908302963 0.8982785134908039 0.9151588467254658 0.8015265988630534 1.0 16.569831506434433 1.404849182976659 24.999977611390765 0.8866236789136124 0.91548430950859 0.0 0.10211082389143468 278.5431706200983 96347.73258408453 0.0615308847242114 0.02249699416480691 25.40090457620874 -1.404849182976659 0.028860630594977676 EMDTART(ph)PLSEAEFEEIMNR ddPTM_BT-474_Trastuzumab_2h_R1 7 EMDTARTPLSEAEFEEIMNR 20 1 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 EMDT(0.011)ART(0.98)PLS(0.009)EAEFEEIMNR;EMDT(0.388)ART(0.612)PLSEAEFEEIMNR;EMDT(0.002)ART(0.997)PLSEAEFEEIMNR;EMDT(0.032)ART(0.963)PLS(0.005)EAEFEEIMNR;EMDT(0.167)ART(0.833)PLSEAEFEEIMNR;EMDT(0.033)ART(0.967)PLSEAEFEEIMNR;EMDT(0.013)ART(0.987)PLSEAEFEEIMNR 272.91 3.1375e-44 2753644000.0 925934.0 999315.0 948332.0 1021967.0 977212.0 1020739.0 1114918.0 996474.0 1164025.0 1072583.0 True False 920948.8742249376 1032576.5956763251 1081848.9025504899 1151347.9174153623 1101654.1558106872 950177.7154911511 1060985.1569396362 1070835.949872444 877166.6358858777 1004129.8346554948 0.9171611503216658 1.0283297637805873 1.0773994210834892 1.1466125969759442 1.0971232183223119 0.9462697777694714 1.0566214849135 1.0664317630198044 0.8735589817295124 1.0 19.937514392102226 1.2530671144608836 24.97976900663518 0.9367794715427198 1.0465050785475345 0.26315453148054 0.07009891492947845 261.9891255113208 451142.1338697046 0.04796584636104143 0.017344636608471718 17.908825898396955 -1.2530671144608836 0.10972560700481471 EMDVVSQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 EMDVVSQHK 9 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 134.25 0.00025426 188050000.0 87712.0 126180.0 118320.0 112060.0 127560.0 131860.0 124160.0 126750.0 157470.0 156180.0 False True 87239.76833771939 130379.82502257937 134978.4275441238 126246.78451022925 143804.0098926449 122744.82856505256 118153.90646273986 136208.7286234587 118663.6284898944 146212.45868757478 0.596664395912611 0.8917148797912878 0.9231663892099939 0.8634475176974626 0.9835277457437727 0.8394963716965625 0.8080973914487675 0.9315808642169685 0.8115835651423766 1.0 17.157706722259153 4.738599626480896 21.568854746059824 0.8914288584717094 0.5966640192003343 0.6680204211029617 0.06299902959940609 0.26435259418060525 141785.3785134344 0.013979152780125839 0.08049317954396719 54777.174453915235 -4.738599626480896 -0.2947648392713751 EMEADERDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EMEADERDR 9 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 66.435 0.066889 78420000.0 33610.0 46454.0 39495.0 47839.0 45948.0 45048.0 45214.0 42034.0 51815.0 46097.0 False True 33429.04749442204 48000.193307963986 45055.552703306 53895.41249495682 51799.20544486712 41933.93779158565 43026.82608574683 45170.79052432713 39045.887535428206 43155.04999437276 0.7746265500510612 1.1122729162455613 1.0440389411941604 1.248878462705629 1.200304609810938 0.9717040716452342 0.9970287623663359 1.0467092618411336 0.9047814228119218 1.0 15.397241772685817 EMEAELEDER ddPTM_BT-474_Trastuzumab_2h_R1 4 EMEAELEDER 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;; 224.86 8.768100000000002e-09 3759480000.0 1186540.0 1414460.0 1216560.0 1258960.0 1244160.0 1415480.0 1413780.0 1222020.0 1542070.0 1415740.0 False True 1180151.800476987 1461539.4460408743 1387841.073470918 1418344.2069159239 1402596.4012859296 1317631.1992815142 1345390.0602359253 1313213.3376918267 1162047.5111793452 1325386.261124006 0.8904210305274692 1.1027271738892195 1.0471219705370618 1.070136494181767 1.058254821576651 0.9941488288584529 1.0150928070545675 0.9908155654021523 0.8767613979896397 1.0 20.337981439036763 1.5359297045818305 3.29319419821187 0.9367884759434958 1.0309528264428733 0.23471653078367416 0.060873434501167986 0.259594258319266 6.1831997995469505 0.03934906679074852 0.015208100829254589 34.35023437045498 -1.5359297045818305 0.09416435049937755 EMEAELEDERK ddPTM_BT-474_Trastuzumab_2h_R1 5 EMEAELEDERK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;; 210.35 2.0913e-08 5731070000.0 3442060.0 3060850.0 2448320.0 2429370.0 2518640.0 3502240.0 3444600.0 2943560.0 4918420.0 3316560.0 False True 3423528.331408813 3162728.541927105 2793022.174821072 2736927.9929110827 2839373.87485114 3260138.3921861784 3277971.5383501435 3163223.394294815 3706341.2944514253 3104894.3013501265 1.1026231488524851 1.0186267985199464 0.8995546719920736 0.881488297917569 0.9144832639283315 1.04999979895243 1.0557433587754521 1.0187861766886315 1.19370932944151 1.0 21.566112725527237 2.6434966221392058 6.331553069832173 1.0613246801306178 0.9585460435956553 0.29853748242560363 0.07675505020504549 0.32867172007161216 18.332494025870446 0.026261473059188245 0.024723682879463995 440.0445252391239 -2.6434966221392058 -0.10277863653496244 EMEDSQPSGQVASFFEAEQVDPGHFLDNKDQEEALS(ph)LDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EMEDSQPSGQVASFFEAEQVDPGHFLDNKDQEEALSLDR 39 1 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 EMEDSQPSGQVASFFEAEQVDPGHFLDNKDQEEALS(1)LDR 178.85 1.3329e-23 50984000.0 59497.0 57780.0 47997.0 54554.0 52408.0 63844.0 66511.0 61927.0 75778.0 61979.0 True False 59176.674762738134 59703.17237125243 54754.56040259725 61460.53080645233 59081.84815344726 59430.614552610474 63293.60883330619 66548.30719893426 57103.52727317723 58023.44715710846 1.0198751998051256 1.028949076562029 0.9436626585514623 1.0592361160486963 1.0182409189421822 1.0242517027933875 1.0908281381822742 1.1469209510897083 0.9841457216176697 1.0 15.82434838774883 2.320099516868371 5.511820680206813 1.0768809251052744 1.0143400085890604 0.06960202106843183 0.051881975127369126 0.29755743780638305 15.085329086604869 0.01829764534099055 0.015103335863564018 208.9774939682093 -2.320099516868371 -0.06254091651621407 EMEEEAEKLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EMEEEAEKLK 10 1 Q92843-2;Q86U42-2;Q86U42 Q92843-2 PABPN1 Polyadenylate-binding protein 2 0 131.83 0.00021874 342490000.0 391410.0 322170.0 286800.0 298470.0 272060.0 435020.0 402870.0 391130.0 745130.0 434560.0 False True 389302.6920497392 332893.23369412223 327178.9470897115 336256.2713971812 306705.22837404336 404948.09132693155 383381.6389871456 420318.1067178964 561502.6957304563 406826.00875446614 0.9569267541218023 0.8182693007099137 0.8042232798522366 0.8265358265236276 0.7538977886714976 0.9953839789317207 0.942372490296042 1.033164295480364 1.3802035357806806 1.0 18.634052389378617 1.824691441903161 1.4306227101737272 1.1768946792766757 0.8421955265488963 0.5695401199670395 0.11152611302779677 0.2731484682791135 1.0537137944064376 0.08138864219843535 0.03371188123866702 66.78692403751168 -1.824691441903161 -0.3346991527277794 EMEEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EMEEER 6 0 Q02818;H7BZI1 Q02818 NUCB1 Nucleobindin-1 0 113.25 0.061180999999999985 150270000.0 306600.0 338110.0 296410.0 344550.0 328010.0 316520.0 343160.0 302790.0 398400.0 355660.0 False True 304949.29966646247 349363.78695818846 338141.95155809436 388169.9946724925 369780.12923241185 294639.717407936 326560.03980149725 325385.72733646614 300219.65828649205 332961.47430415486 0.9158696221650444 1.0492618934016682 1.0155587887901025 1.1658105355393324 1.1105793245455893 0.8849063334540243 0.9807742486843688 0.9772473767918014 0.901664851508455 1.0 18.34499573267707 2.742917789154667 24.990185032627082 0.9526699028824004 1.0556595384946592 0.3562652199474563 0.06867831852987256 443.78432586798243 2545289.7979449295 0.021965998381356912 0.02256427065218465 553.2453713553466 -2.742917789154667 0.10298963561225882 EMEEKTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EMEEKTR 7 1 A6NML8;K4DI95;C9J6U3;O60879-2;O60879-3;O60879 A6NML8 DIAPH2 Protein diaphanous homolog 2 0 78.49600000000002 0.032082 144220000.0 82742.0 109280.0 100530.0 109630.0 96459.0 100820.0 103430.0 86935.0 120610.0 104530.0 False True 82296.52626550043 112917.31873884492 114683.75017757571 123509.1467593829 108742.4818927144 93850.55070475207 98426.69575903019 93422.53114698523 90887.28159119938 97858.80590736456 0.8409721077467904 1.153879997736076 1.1719308151597316 1.2621158169076736 1.1112181564493295 0.9590404239511485 1.005803155335895 0.954666575795143 0.9287593563857239 1.0 16.578414058375646 2.757826482581686 6.993098394876196 0.9687758886738491 1.1230833247532948 0.3048712724593239 0.10324987823114945 0.2087089630342041 49.43865102024773 0.0326066666291555 0.033662567526788194 572.5672225615629 -2.757826482581686 0.15430743607944564 EMEEQMR ddPTM_BT-474_Trastuzumab_2h_R1 4 EMEEQMR 7 0 P23246;P23246-2;H0Y9K7;H0Y9U2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;; 176.65 0.0017308 2888190000.0 1946680.0 2355360.0 2300180.0 2293320.0 2118290.0 2130230.0 2193260.0 1949220.0 2363180.0 2147140.0 False True 1936199.2911764812 2433756.7337548146 2624025.3504770324 2583654.0768606053 2388041.6754114996 1982972.214122036 2087163.6347331584 2094680.6943386046 1780805.9539896396 2010107.6869409643 0.9632316237360602 1.21075937849806 1.3054153105947992 1.2853311758597765 1.188016786824832 0.9865004880110558 1.0383342386543777 1.0420738689509446 0.8859256474461414 1.0 20.938841361899577 2.7613075219990204 6.536004098633691 1.000983778392129 1.204035870945373 0.5182302740427673 0.09573498342689477 0.15214479079313067 26.747198088835393 0.030730585707471322 0.03179776247368504 577.1750137996105 -2.7613075219990204 0.20305209255324397 EMEHNTVCAAGTS(ph)PVGEIGEEK ddPTM_BT-474_Trastuzumab_2h_R1 10 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 EMEHNTVCAAGT(0.004)S(0.996)PVGEIGEEK;EMEHNTVCAAGT(0.017)S(0.983)PVGEIGEEK;EMEHNTVCAAGT(0.206)S(0.794)PVGEIGEEK;EMEHNTVCAAGT(0.005)S(0.995)PVGEIGEEK;EMEHNTVCAAGT(0.002)S(0.998)PVGEIGEEK;EMEHNTVCAAGT(0.062)S(0.938)PVGEIGEEK;EMEHNTVCAAGT(0.075)S(0.925)PVGEIGEEK;EMEHNTVCAAGT(0.006)S(0.994)PVGEIGEEK;EMEHNTVCAAGT(0.035)S(0.965)PVGEIGEEK;EMEHNTVCAAGT(0.04)S(0.96)PVGEIGEEK 284.34 4.3335e-46 24795730000.0 14173930.0 13494660.0 13283010.0 12728830.0 13013010.0 17138700.0 16511920.0 15640670.0 21077010.0 16602070.0 True False 14097619.135751663 13943821.600405762 15153142.350007344 14340298.572883653 14670139.689346883 15953942.009160195 15713175.347940138 16807856.217112992 15882863.302964317 15542511.678852774 0.9070360973209343 0.8971408153662707 0.9749481076874333 0.9226500110915239 0.94387187814098 1.0264712897637527 1.0109804433552119 1.0814118441346807 1.0218981095941286 1.0 23.889716327147802 2.741410932004651 2.18792548215194 1.0395649357056516 0.925828851636993 0.7503817338303307 0.028416752489928775 0.14691222361626952 1.3868570815752546 0.010288742472995304 0.010219706666624055 551.3291205503936 -2.741410932004651 -0.11373608406865854 EMEKGS(ph)PSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EMEKGSPSLR 10 1 F5GXK4;B9A071;Q9P2M4-2;Q9P2M4 F5GXK4 TBC1D14 TBC1 domain family member 14 1 EMEKGS(1)PSLR 101.53 0.0019787 236400000.0 185880.0 162080.0 133140.0 147780.0 144780.0 175000.0 173300.0 173330.0 193760.0 161970.0 True False 184879.24273320942 167474.73482057083 151884.95472637436 166488.9328477752 163216.8748217083 162902.6619056891 164916.81692971027 186264.76475190587 146010.4442509809 151632.93593050647 1.219255180932062 1.1044746564646395 1.001662032027022 1.0979734173588596 1.0763946092589725 1.0743224148897808 1.0876055120722046 1.2283925230945287 0.962920379764312 1.0 17.2102236273043 4.713986645947968 4.351036123243676 1.0830745630564358 1.2264611342163858 0.2755933208184723 0.0703918835867314 0.26735487509980693 11.653734984126709 0.017268856006887146 0.11189781512693496 51759.09163850132 -4.713986645947968 0.14338657115995002 EMEKGS(ph)PSLRH ddPTM_BT-474_Trastuzumab_2h_R1 1 EMEKGSPSLRH 11 2 F5GXK4;B9A071;Q9P2M4-2;Q9P2M4 F5GXK4 TBC1D14 TBC1 domain family member 14 1 EMEKGS(0.998)PS(0.002)LRH 100.4 0.002118 158330000.0 65549.0 71968.0 74184.0 79365.0 80530.0 82603.0 81467.0 75854.0 100690.0 84892.0 True False 65196.091467178594 74363.41137442528 84628.46238111281 89412.60086252312 90785.0181612942 76892.84903654667 77526.12997583792 81514.61065880745 75876.2986768748 79474.1198803023 0.8203436737062562 0.9356934243049893 1.0648556097075825 1.1250530486803676 1.1423217809524344 0.9675206111417989 0.9754890031195276 1.0256749087826122 0.9547296502453093 1.0 16.278197514173424 4.5248254919383495 3.0344832189047133 1.0339338387573045 0.8227935915031274 0.5436157592781116 0.06074892798958011 0.22662659093296564 3.758469008536056 0.016532162420438156 0.08847718914299986 33483.08704964743 -4.5248254919383495 -0.21114024725417713 EMFEDTVEER ddPTM_BT-474_Trastuzumab_2h_R1 6 EMFEDTVEER 10 0 Q16576;E9PC52 Q16576 RBBP7 Histone-binding protein RBBP7 0 ;;;;; 209.6 2.1523000000000006e-07 4661510000.0 2384440.0 2952240.0 2552360.0 2641540.0 2535320.0 2857060.0 2970510.0 2496180.0 3097110.0 2912140.0 False True 2371602.4399761884 3050503.523733232 2911710.1024891785 2975958.693156801 2858177.973981033 2659558.166995824 2826815.0828498225 2682457.6269452097 2333868.739647788 2726284.7319915113 0.8699026965696893 1.1189233053822973 1.068013941582036 1.091580295423841 1.0483783811873442 0.9755247263014437 1.0368744869817303 0.9839242377980504 0.8560619924474766 1.0 21.378504813778548 1.5197810105714964 4.023059909207716 0.9250074151962248 1.035183682518488 0.23255973439017874 0.0728295902157237 0.23099263634317863 8.129782571457765 0.04468117871166936 0.01812481854018443 33.09641934215687 -1.5197810105714964 0.11017626732226316 EMFFEDHIDDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EMFFEDHIDDAK 12 0 Q9UIV1 Q9UIV1 CNOT7 CCR4-NOT transcription complex subunit 7 0 154.28 7.136100000000001e-05 163080000.0 263250.0 241570.0 211490.0 202310.0 190480.0 263510.0 244860.0 222170.0 337040.0 258510.0 False True 261832.69124982457 249610.51141785108 241265.953695966 227922.4252566881 214736.49893658663 245294.17393581834 233015.18634396343 238749.45355640067 253981.0081046165 242011.67047845433 1.0819010948198668 1.0313986549672334 0.9969186742894917 0.9417827859544461 0.887298114640732 1.0135634097763737 0.9628262384342666 0.9865204148394815 1.0494576877325748 1.0 17.884717094397104 4.4219343591003515 2.0951739481037945 0.9746003736806143 1.08249026637949 0.3879259246201434 0.04121599468625874 0.4011654972319406 2.990727533354607 0.011042814152000984 0.06406389402605339 26420.09403915426 -4.4219343591003515 0.10788989269887572 EMGEMHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EMGEMHR 7 0 P16422;B5MCA4 P16422 EPCAM Epithelial cell adhesion molecule 0 123.69 0.0042192 135290000.0 259460.0 344560.0 357060.0 312840.0 364450.0 348580.0 280020.0 235060.0 347090.0 318100.0 False True 258063.09618871612 356028.47130908136 407330.94437884353 352445.511923792 410860.54723560996 324483.4850690579 266474.36281972006 252601.37081049435 261554.32026771753 297798.58566088864 0.8665692471843355 1.1955344600410585 1.367806846613712 1.183502974473933 1.3796591623288232 1.0896072066593228 0.8948140644400564 0.8482289136797259 0.8782926879496887 1.0 18.18397737656076 2.364201394123581 3.709884506414545 0.8873235409290019 1.2092727658164224 0.5000144388302714 0.13720418893710612 0.17780678428556726 4.682103709078048 0.050654060159379795 0.0413211987602337 231.31372059263254 -2.364201394123581 0.3219492248874205 EMITMLHYDLLHHPYEPSGNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EMITMLHYDLLHHPYEPSGNKK 22 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 170.53 2.1174e-12 249250000.0 190110.0 201110.0 202860.0 155010.0 162230.0 219420.0 239750.0 99053.0 280570.0 172020.0 False True 189086.46888320654 207803.82477643798 231420.92470927106 174634.25010646664 182889.02888745512 204252.01185912194 228152.37656605893 106444.83784094233 211427.28294538448 161041.53632626875 1.174147199515776 1.2903740830901491 1.4370263100347869 1.0844050180486304 1.1356637117328758 1.2683188233208924 1.4167300050082992 0.6609775357910522 1.312874229646162 1.0 17.297073315095567 1.7566092566139768 24.999999999556568 0.9621481098026115 1.2552230167459688 0.310796376414457 0.18048155972329039 7.652752689095571 10611.092738764872 0.0798976040865117 0.0443078447014719 57.0964697207854 -1.7566092566139768 0.29307490694335736 EMKPVIFLDVFLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EMKPVIFLDVFLPR 14 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;; 165.75 3.5698e-06 761107000.0 1534453.0 1876179.0 1888290.0 1791590.0 1696560.0 1884190.0 1785967.0 1696700.0 2290800.0 1977300.0 False True 1526191.675541754 1938626.4838408441 2154144.818689092 2018405.110304138 1912606.8597010467 1753940.3802061744 1699572.9531535127 1823316.3696680262 1726263.0351473284 1851107.0211483038 0.8244751157580323 1.0472795260850176 1.163706254732265 1.0903773186771522 1.0332232755049422 0.9475089015210727 0.9181386779567238 0.9849870098472004 0.9325571214550683 1.0 20.819956875886838 2.776083843183524 5.7511808429544855 0.9548832098610021 1.0438449593379406 0.16182733322249654 0.08341415200631032 0.3344497040213014 31.39300403825261 0.02677924133755219 0.027966400277678945 597.1505589933123 -2.776083843183524 0.08896174947693858 EMLFEFIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EMLFEFIDR 9 0 O60942-2;O60942 O60942-2 RNGTT mRNA-capping enzyme;Polynucleotide 5-triphosphatase;mRNA guanylyltransferase 0 ; 105.78 0.007076399999999998 79585000.0 95430.0 125607.0 124104.0 113224.0 103309.0 114585.0 116111.0 93451.0 133100.0 117957.0 False True 94916.21548326971 129787.75306396517 141576.76446869428 127558.14679088182 116464.7887895833 106664.00865407674 110494.26734290582 100424.78815456286 100299.28844862476 110428.88327193153 0.8595234568254955 1.1753062171638768 1.2820628106874992 1.15511579046552 1.054658757191163 0.9659067944336287 1.0005920921142821 0.9094068977159395 0.9082704223462751 1.0 16.752758040603894 2.8822757017045486 2.434172952884397 0.9486369640079789 1.1328779936022866 0.3443044604094977 0.10407594791712005 0.31387587502565173 3.6490879654692816 0.035688032274187535 0.038781421308161576 762.5629516722267 -2.8822757017045486 0.18424102959430766 EMLMEDVGS(ph)EEEQEEEDEAPFQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EMLMEDVGSEEEQEEEDEAPFQEK 24 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK 185.8 1.4654e-17 354410000.0 670000.0 584480.0 528280.0 482710.0 497130.0 571840.0 588510.0 562280.0 658640.0 602630.0 True False 666392.7944439974 603934.063474379 602657.2321079248 543821.0365066282 560436.5587796371 532310.0467665683 560041.522973479 604240.1887999865 496326.99732383294 564169.6374625 1.1811922340260506 1.0704831018392444 1.0682198971545735 0.9639317687364478 0.9933830563806068 0.9435283493113374 0.9926828488899397 1.071025714034726 0.8797477998925872 1.0 19.105769499344735 4.663063927179178 1.0516614209519868 0.9859408483945421 1.2565465139209644 0.6263175394149009 0.04884592820848103 1.1094760590799342 1.0928795936115474 0.015101711272307979 0.32732733127463737 46032.432730900524 -4.663063927179178 0.2706056655264223 EMLPGALHGELHPSEGPWGAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EMLPGALHGELHPSEGPWGAPR 22 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 0 ; 210.61 2.4798000000000003e-23 283430000.0 114339.0 159782.0 143906.0 169204.0 156210.0 170703.0 169280.0 77989.0 150460.0 139067.0 False True 113723.41152825713 165100.2472797412 164166.71394662492 190625.20905112295 176102.4175707908 158902.70340163918 161091.27968760184 83808.93520011773 113381.14906070675 130191.6249987512 0.8735078890777188 1.2681326258991301 1.2609621697878002 1.4641894903220651 1.3526401377391208 1.2205293804663961 1.2373398034562286 0.6437352264473358 0.8708789759847787 1.0 16.990277119857517 1.7541470538743322 24.99999999999695 0.8127962168373997 1.2537831813993492 0.5562357821030522 0.16348912628706466 3.6014093466852857 5783.623608923811 0.07549939061864154 0.04186852543939746 56.773681085448345 -1.7541470538743322 0.4409869645619495 EMLQQSK ddPTM_BT-474_Trastuzumab_2h_R1 4 EMLQQSK 7 0 P08238;Q58FF7;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha 0 ;;; 120.46 0.010592 996550000.0 1396680.0 1459040.0 1461140.0 1341400.0 1161500.0 1328430.0 1508380.0 1291210.0 2021110.0 1506520.0 False True 1389160.4300657355 1507603.2643916951 1666855.8115434495 1511221.1024631583 1309410.1402501322 1236598.7608878566 1435413.8968288307 1387566.6468315276 1523034.5219864782 1410372.6038033376 0.9849598796230163 1.068939697443184 1.1818549275903802 1.0715048621817125 0.9284143330060858 0.8767886993501811 1.017755090362621 0.9838298355269314 1.0798809604492645 1.0 20.427644925313754 3.3361483998420725 7.114917346453417 0.9785324121264027 1.0852520475698462 0.32678932407055805 0.06699245511768344 0.25685779511756607 16.219966579774947 0.019458388152190774 0.026364386626877432 2168.444942954238 -3.3361483998420725 0.10671963544344343 EMNDAAMFYTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EMNDAAMFYTNR 12 0 Q01518-2;Q01518;Q5T0R1;Q5T0R9;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R5;Q5T0R7;Q5T0R6 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 ; 220.29 6.9577e-11 752370000.0 501900.0 580740.0 500090.0 501990.0 425800.0 464960.0 460040.0 407380.0 563100.0 523420.0 False True 499197.8261663326 600069.5798352568 570498.3251397968 565541.8825298055 480023.1060856715 432818.4095981101 437786.10767653753 437780.76423372416 424331.5501534226 490014.88747759274 1.018740121827747 1.2245945892056118 1.1642469233465573 1.1541320416630534 0.979609228929033 0.8832760405017326 0.8934138918311059 0.8934029871770842 0.8659564454005008 1.0 18.90246605583572 3.1097174627427324 3.162268072117225 0.9002262593390115 1.149560966948789 0.7751306132290727 0.05916356611702442 0.10127723977433409 2.020058531792386 0.017007140585904666 0.020871224982194913 1287.4117327941767 -3.1097174627427324 0.2493347076097775 EMNPALGIDCLHK ddPTM_BT-474_Trastuzumab_2h_R1 5 EMNPALGIDCLHK 13 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ;;;; 179.56 1.3648e-05 2978230000.0 2518670.0 2525580.0 2242940.0 2146813.0 2238237.0 2868100.0 2712446.0 2434476.0 3414280.0 2700110.0 False True 2505109.7605705406 2609642.4035546524 2558726.4560160334 2418599.3056823066 2523263.214879933 2669834.9977811864 2581234.6244300357 2616148.961138645 2572876.443008045 2527786.6681195293 0.9910289472466209 1.0323823748528658 1.012239873042578 0.9568051513941842 0.9982105083088513 1.0561947459622174 1.0211441720872225 1.03495638858039 1.0178376504066535 1.0 21.269443282114167 2.7975249395569697 23.993155228902914 1.028305906584071 0.998523731289326 0.28071745819615435 0.0221706243373828 216.8186728882515 88224.92792556099 0.006892837391793239 0.007310953044195533 627.3717220543979 -2.7975249395569697 -0.029782175294744917 EMPQDLRS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 EMPQDLRSPAR 11 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 EMPQDLRS(1)PAR;EMPQDLRS(1)PAR;EMPQDLRS(1)PAR 78.038 0.018753 819150000.0 944670.0 1193760.0 1098490.0 1221710.0 1155090.0 1149700.0 1131370.0 976100.0 1322830.0 1144430.0 True False 939584.001682704 1233493.5799568421 1253147.8437537558 1376378.360735252 1302183.8647451797 1070223.945102691 1076641.3108468913 1048941.5385353684 996836.2715138574 1071391.4976041839 0.8769754135474995 1.1513005121985254 1.169645126506987 1.2846642556087773 1.2154136631260257 0.9989102466240364 1.0048999952439859 0.9790459798131519 0.9304127144400112 1.0 20.03105432153697 2.6536582146791745 6.357078762302165 0.9815669660712559 1.1496787174252747 0.37733129928517894 0.10049253644648938 0.26050039156868876 16.102168242522964 0.03403096754403927 0.032061754925138165 450.4620559709027 -2.6536582146791745 0.1681117513540188 EMQDVDLAEVKPLVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EMQDVDLAEVKPLVEK 16 1 Q92597;E5RI76;E5RIR1;E5RGM5;E5RIM2;E5RH82;E5RK17;E5RIV1;E5RJ98 Q92597 NDRG1 Protein NDRG1 0 ; 192.69 4.5059e-10 915440000.0 1671910.0 1311880.0 1199430.0 932090.0 905730.0 2329500.0 2309800.0 1409160.0 2665400.0 1983280.0 False True 1662908.622326665 1355545.1327517924 1368299.3183675485 1050092.4984306595 1021069.3468176967 2168467.1480531613 2198066.149707128 1514318.6747694907 2008547.8845301617 1856705.3724285646 0.8956233159123066 0.7300809018389083 0.7369501584291844 0.5655676522641511 0.5499361190958053 1.1679112799769698 1.1838529593050429 0.8155944918653232 1.0817806176232407 1.0 20.824313471587732 2.737944916342105 24.999954846643586 1.0312324306185203 0.6926151736998047 0.6430861209802756 0.13156156583532802 40.53841851888753 1645996.0857252395 0.044711676662362455 0.04455393164850088 546.9465866282602 -2.737944916342105 -0.3386172569187156 EMQPTHPIR ddPTM_BT-474_Trastuzumab_2h_R1 29 EMQPTHPIR 9 0 B7Z2E6;H0YB80;P63104-2;P27348;P31946-2;P31946;P63104;E7EX29;B0AZS6 B7Z2E6;P27348;P31946-2;P63104 YWHAZ;YWHAQ;YWHAB 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;; 183.95 4.457e-05 122035356000.0 17824317.0 21285541.0 20277695.0 21011169.0 20722692.0 20332132.0 20703254.0 18728421.0 21809566.0 19990150.0 False True 17728352.85773981 21994017.364803754 23132618.19911546 23671180.841076314 23361603.993181486 18926619.57153056 19701758.50990936 20126030.87601486 16434890.692511799 18714361.51257155 0.9473127280260467 1.1752480761915955 1.2360890957234048 1.2648671356046517 1.248324928290399 1.011341987746492 1.052761457914261 1.075432408553987 0.8781967090606594 1.0 24.157642492125603 2.7251350200732705 24.17848326579011 1.0178289215314809 1.182873898232433 0.43283115702194264 0.09684077653269527 526.2260352971788 947691.5206988612 0.032294751083870366 0.030617817738638264 531.0495193198817 -2.7251350200732705 0.16504497670095208 EMSGSNETSS(ph)PVSEKPSASR ddPTM_BT-474_Trastuzumab_2h_R1 8 EMSGSNETSSPVSEKPSASR 20 1 A0A087X165;Q9C0H9 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 EMSGSNET(0.002)S(0.006)S(0.992)PVSEKPSASR;EMSGSNET(0.005)S(0.079)S(0.916)PVSEKPSASR;EMSGSNETS(0.165)S(0.834)PVS(0.001)EKPSASR;EMSGSNETS(0.003)S(0.997)PVSEKPSASR;EMSGSNETS(0.005)S(0.995)PVSEKPSASR;EMSGSNET(0.001)S(0.059)S(0.94)PVSEKPSASR;EMSGSNET(0.003)S(0.341)S(0.642)PVS(0.014)EKPSASR;EMSGSNETS(0.031)S(0.968)PVSEKPSASR 271.44 1.2826e-44 12588540000.0 4613012.0 4799230.0 4603640.0 4632320.0 4665630.0 5580430.0 5357170.0 5010150.0 6704450.0 5417050.0 True False 4588176.055945811 4958969.4693542 5251792.496443797 5218771.237037525 5259770.32514441 5194668.009019238 5098023.220723229 5384032.83402621 5052228.132527286 5071329.23123017 0.9047284936049875 0.9778441200022989 1.035585002863214 1.02907364106818 1.03715812666111 1.0243207987818117 1.0052637066685937 1.0616610731699994 0.9962335123925192 1.0 22.27393250668373 4.603591736467825 2.3401048445705284 1.027417945125336 0.8925488591327722 0.782501867520629 0.019216815558716623 0.17011322646918348 1.3663235351102574 0.004616247865972699 0.04125351784842607 40141.32802460852 -4.603591736467825 -0.13486908599256386 EMSPS(ph)PPAAQDPGGTALVSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 EMSPSPPAAQDPGGTALVSAR 21 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 EMS(0.008)PS(0.992)PPAAQDPGGTALVSAR;EMSPS(1)PPAAQDPGGTALVSAR;EMSPS(1)PPAAQDPGGTALVSAR 252.8 2.5136e-36 456440000.0 386030.0 471520.0 411770.0 434770.0 437940.0 428240.0 425320.0 401800.0 451040.0 461680.0 True False 383951.6573719654 487214.2581601415 469743.636830999 489811.8374220276 493709.06312625395 398636.77676852833 404745.6467198181 431784.3562990586 339887.2356263541 432215.18713586626 0.888334488929633 1.1272492792044957 1.0868281606294776 1.1332592005103603 1.142276064841417 0.9223108965933152 0.9364447589218721 0.9990032029192157 0.7863842959306079 1.0 18.721390240805107 2.726911463594983 24.724579244674622 0.9352558025325761 1.0822876790938518 0.41133520869109186 0.08743223739555814 640.4107939397155 1359227.5616908222 0.027538655845279193 0.026164180704786506 533.22617952769 -2.726911463594983 0.1470318765612757 EMSVQEAYKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EMSVQEAYKK 10 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 75.819 0.060691 219050000.0 44021.0 44942.0 48347.0 47861.0 47060.0 46498.0 56443.0 46743.0 67600.0 45252.0 False True 43783.995827192884 46437.86730198731 55153.83736034266 53920.19769270113 53052.81205352673 43283.702704518495 53712.63645680114 50231.200016144605 50940.88579359153 42363.97861781365 1.033519448732375 1.096163977442398 1.3019040977693015 1.2727840833634119 1.252309480470244 1.021710049827995 1.2678846087939315 1.1857054425719793 1.202457546614174 1.0 15.370550466109343 -1.5640156226172168 15.770598062331022 0.999999975171252 1.1865077337569896 0.24522387535529722 0.09523272624442375 8.356571499978397e-08 2.268144919306123e-09 0.09232630291455421 0.021761515372492338 0.027288796166782373 1.5640156226172168 0.18650775858573754 EMTHLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EMTHLQK 7 0 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 121.29 0.01346 0.0 413060.0 469380.0 408010.0 405690.0 407820.0 450950.0 462210.0 427600.0 599580.0 445900.0 False True 410836.1308552804 485003.0295537982 465454.261513505 457050.3124036672 459753.45966148045 419776.88792211714 439851.1364863324 459509.6833088045 451821.5429603785 417442.28024580417 0.9841746998252456 1.161844529184279 1.1150146584084146 1.094882655715996 1.1013581551700082 1.00559264786245 1.0536813286553848 1.1007741789792582 1.0823569253558376 1.0 18.671217204335154 EMTLDEWK ddPTM_BT-474_Trastuzumab_2h_R1 2 EMTLDEWK 8 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ; 139.19 0.0015663 616260000.0 1602610.0 1560730.0 1540090.0 1296530.0 1006180.0 1454840.0 1647430.0 1418930.0 2464800.0 1538030.0 False True 1593981.7258267088 1612677.954568792 1756921.2852977451 1460670.5650637844 1134311.0589039002 1354270.3351249893 1567737.5171062462 1524817.7617805472 1857383.0666278766 1439871.6086262686 1.1070304576305046 1.1200151075326723 1.2201930191358954 1.014445007674927 0.7877862526827006 0.9405493705213421 1.0888036875745957 1.0589956442264479 1.2899643659200568 1.0 20.45750874359158 3.7153103077374765 22.47893066414852 1.0211793189251643 1.1461730826109953 0.17719296407400265 0.12141305869058323 387.57372765121136 374714.73825862753 0.03467105586760023 0.05377294489333314 5191.70859191111 -3.7153103077374765 0.12499376368583093 EMTNHQK ddPTM_BT-474_Trastuzumab_2h_R1 3 EMTNHQK 7 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 104.45 0.0081492 336065000.0 487490.0 439200.0 413320.0 377300.0 386280.0 283092.0 433180.0 429650.0 576280.0 519820.0 False True 484865.40800523077 453818.5064979937 471511.86335815716 425066.14131455903 435470.46833906276 263522.51636688825 412225.4284917017 461712.6647184926 434263.5157563747 486644.6425597078 0.9963438731286172 0.9325459828571182 0.9689038409588698 0.8734631066289946 0.894842828328545 0.5415091286750494 0.8470768861718736 0.9487675900220021 0.8923626765357715 1.0 18.89250914704623 3.605057813504764 2.448325674575853 0.8444980059789114 0.9648162844959728 0.1558870006426576 0.1156639504159932 0.5739687570425844 6.701570244362702 0.03493108071463676 0.060522117796244924 4027.7064779261 -3.605057813504764 0.12031827851706134 EMVELPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EMVELPLR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;; 152.41 0.0010644 1887480000.0 2553570.0 3200880.0 2977480.0 2947460.0 2719900.0 2700820.0 2752930.0 2509840.0 3332770.0 2879580.0 False True 2539821.8628482996 3307419.3558271765 3396683.303279898 3320608.133790114 3066263.1428896566 2514118.6704464243 2619760.2586861365 2697137.0055092806 2511453.4903299985 2695802.7390675284 0.9421393583592907 1.226877363056321 1.259989558603536 1.231769700975489 1.13742118384755 0.9326048356624387 0.9717922682993879 1.0004949421641338 0.9316161950331366 1.0 21.362283502868838 2.8332248969434333 4.736706587979921 0.970754963463446 1.176789111988732 0.5586583564992876 0.08526994253387772 0.16577317848489226 6.212893022984422 0.026624050917192926 0.028268746510862863 681.1219825536486 -2.8332248969434333 0.2060341485252859 EMVELPLRHPALFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EMVELPLRHPALFK 14 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 135.37 2.0015e-05 4404700000.0 3798200.0 5586300.0 5003000.0 5373000.0 5254200.0 5406700.0 5879400.0 4827900.0 7972300.0 5750800.0 False True 3777750.913219687 5772236.618510337 5707378.91314444 6053221.2490939 5923291.225916701 5032947.555002803 5594990.960510907 5188182.413579456 6007633.488346897 5383779.020492419 0.7016913024922337 1.0721533325456565 1.0601064589427418 1.1243442990608208 1.1002106890663088 0.9348354633141077 1.0392311681468624 0.963669272797331 1.1158766854062703 1.0 22.36018776445398 4.741680060392941 24.97992336172491 1.0417293844268587 0.7016911758278109 0.7456018557819319 0.06022766967440821 151.0668529161875 1209656.4644014935 0.014874597744482722 0.10562396893471232 55167.08801344294 -4.741680060392941 -0.34003820859904776 EMVHADVELMR ddPTM_BT-474_Trastuzumab_2h_R1 4 EMVHADVELMR 11 0 O60547;O60547-2 O60547 GMDS GDP-mannose 4,6 dehydratase 0 ;;; 182.92 5.5744e-06 979940000.0 615385.0 758800.0 717234.0 778110.0 697012.0 760513.0 738401.0 574224.0 802344.0 730564.0 False True 612071.835535701 784056.1992957143 818214.3128903154 876618.6462185837 785772.3466862037 707940.5263650364 702681.7226642533 617075.5107303901 604617.0720587778 683938.7800526923 0.8949219628817444 1.1463835977180716 1.1963268303447836 1.2817209255937305 1.148892809712685 1.0350934133468714 1.027404415655619 0.9022379322939534 0.8840222103098125 1.0 19.38350766845567 2.253244883606091 1.7060248132736404 0.9237303979122815 1.1432893244678357 0.4328870111077865 0.09842212561319479 0.33078524012028016 1.9239536958084844 0.05346814232766081 0.03370433569709986 179.1615799325418 -2.253244883606091 0.2195589265555542 ENAEQGEVDMESHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ENAEQGEVDMESHR 14 0 P14209-3;P14209 P14209-3 CD99 CD99 antigen 0 ;;; 294.97 1.3664000000000005e-43 2187240000.0 1553742.0 1941683.0 1858948.0 1868089.0 2021489.0 2348835.0 1929215.0 1704923.0 2017007.0 1961009.0 False True 1545376.8257089662 2006310.744882838 2120671.7201343295 2104588.8758605192 2278913.6418459774 2186465.5650128573 1835891.5001330145 1832153.0116835725 1519942.651359093 1835855.7267157263 0.8417746575726757 1.092847719832565 1.1551407277129166 1.146380320214784 1.2413359114677625 1.190978971383747 1.0000194859632854 0.9979831121921667 0.8279205327742233 1.0 20.808021256327464 1.8388980541803457 2.1935250247830496 0.9261032895805296 1.1178135732247616 0.3181725590975806 0.1104878643512869 0.3511606696528534 3.1858950380590563 0.07035822910590275 0.03277281900291421 69.00777967063864 -1.8388980541803457 0.19171028364423204 ENAEVDGDDDAEEMEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENAEVDGDDDAEEMEAK 17 0 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 ; 409.68 4.608899999999996e-140 1057910000.0 1603070.0 1431290.0 1275710.0 1159020.0 1288830.0 1664330.0 1540120.0 1597280.0 2329900.0 1701480.0 False True 1594439.2492378226 1478929.6224169233 1455318.8793299024 1305751.813163002 1452954.8610060944 1549278.7845114064 1465618.511770258 1716477.1444234967 1755727.364060488 1592890.089689683 1.0009725464162071 0.9284567918336658 0.9136342103888779 0.8197375459956441 0.9121501040220233 0.972621271573877 0.9201002136034262 1.0775866806716654 1.1022275644909865 1.0 20.60321529285399 1.7428025360284891 5.9022784112618965 1.066836429848723 0.9208531299366779 0.6018789596736143 0.05046475696690383 0.10083755356837602 9.19583304738595 0.02616218970824603 0.01366961318652969 55.309857050650706 -1.7428025360284891 -0.14598329991204506 ENALS(ph)SGTLQEEQRTPPPGQDTQQFHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENALSSGTLQEEQRTPPPGQDTQQFHEK 28 1 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 ENALS(0.279)S(0.279)GT(0.247)LQEEQRT(0.195)PPPGQDTQQFHEK 55.895 0.038455 63688000.0 61938.0 65652.0 53667.0 53147.0 55260.0 65541.0 58570.0 56440.0 73983.0 65528.0 True False 61604.53268995875 67837.18713252792 61222.84711807375 59875.40475071533 62297.03344831889 61010.304936918765 55736.7453408721 60651.839396512856 55750.88097140948 61345.94693865667 1.0042152051473043 1.1058136766616744 0.9979933503886407 0.9760286985314316 1.015503656836747 0.9945287012673627 0.90856443045221 0.9886853561354608 0.9087948553008397 1.0 15.904680409262248 3.5173625339630132 0.7560701218881974 0.9554451257549458 1.0562758379151203 0.37104517562263395 0.04186961969469735 0.8166567435709045 0.9201643389109465 0.020140544761902857 0.053346742406992526 3291.2625941517736 -3.5173625339630132 0.10083071216017447 ENALVQMADGNQAQLAMSHLNGHK ddPTM_BT-474_Trastuzumab_2h_R1 5 ENALVQMADGNQAQLAMSHLNGHK 24 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20;K7EK45 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ;;;; 245.41 4.8817e-38 5404650000.0 2690663.0 2783507.0 2897114.0 2793731.0 2647374.0 3498023.0 3292553.0 1395413.0 3823810.0 2697982.0 False True 2676176.76936876 2876154.3478294867 3305002.469033689 3147417.05815231 2984501.3866849397 3256212.9034704245 3133279.63261609 1499545.803823638 2881483.2619288927 2525794.4789014016 1.0595386092271322 1.1387127384491214 1.308500155749491 1.246109722878674 1.1816089597214787 1.289183633375713 1.2405125036059605 0.5936927237547324 1.1408225356412207 1.0 21.26830582272813 1.7711041164096937 24.999999999987157 0.8714447636752511 1.2137160852903996 0.4594064372039939 0.14598318466523882 21.84212161318868 16787.451183489204 0.06415786345403295 0.035590882344984816 59.03425901068873 -1.7711041164096937 0.3422713216151485 ENAS(ph)PAPGTTAEEAMSR ddPTM_BT-474_Trastuzumab_2h_R1 12 ENASPAPGTTAEEAMSR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 ENAS(1)PAPGTTAEEAMSR;ENAS(0.999)PAPGTTAEEAMSR;ENAS(0.929)PAPGT(0.061)T(0.01)AEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(0.999)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR 356.36 6.868299999999997e-88 14358080000.0 5990508.0 6090243.0 5575504.0 5420661.0 5700281.0 6129673.0 5693855.0 5575061.0 6483985.0 5869537.0 True False 5958255.770536014 6292953.056625368 6360486.500050477 6106916.126807108 6426177.997137469 5705943.133208189 5418421.481011638 5991100.361406143 4886093.777697643 5494938.12349656 1.0843171727554657 1.1452272828544632 1.1575174018525884 1.111371227401762 1.1694723130109315 1.0383998882188252 0.9860750674957132 1.0902944176546727 0.8891990533623161 1.0 22.38967180492502 2.5998626674329426 4.657480481188639 1.0086305963337487 1.1339225367529224 0.6261806267336386 0.0515520173704335 0.16246822333944214 5.472493742259462 0.01668892451855574 0.015596858273723709 397.9813010374741 -2.5998626674329426 0.1252919404191737 ENDFDR ddPTM_BT-474_Trastuzumab_2h_R1 3 ENDFDR 6 0 O14579;M0QXB4;O14579-3;O14579-2 O14579 COPE Coatomer subunit epsilon 0 ;; 130.0 0.037108 3611230000.0 3276030.0 3994390.0 3523330.0 3521320.0 3628880.0 3506310.0 3719730.0 3561030.0 4558220.0 3581330.0 False True 3258392.2184811523 4127340.856490255 4019384.2386666425 3967118.75095093 4090996.3579430985 3263927.04266593 3539792.4491514824 3826772.1411439483 3434907.758018715 3352766.453269127 0.9718518315834511 1.2310254573401247 1.1988261916506375 1.1832374268368073 1.220185305169156 0.9735026546461136 1.0557825898371165 1.1413774846776579 1.024499560555283 1.0 21.676920560822907 2.7486465126510446 24.91669080119861 1.0568113575707232 1.1682482055470411 0.3532953017763941 0.08045749911290329 821.3876905343689 2029195.720115915 0.024663849087545073 0.025884624171101343 560.5915054101035 -2.7486465126510446 0.11143684797631792 ENDHLFLSLTEQR ddPTM_BT-474_Trastuzumab_2h_R1 4 ENDHLFLSLTEQR 13 0 Q13137;Q13137-3;Q13137-4;Q13137-5;Q13137-2;D6REB0 Q13137 CALCOCO2 Calcium-binding and coiled-coil domain-containing protein 2 0 ;;; 220.97 1.9908e-11 1068770000.0 555975.0 700745.0 599256.0 618346.0 607317.0 647700.0 678220.0 639379.0 797250.0 655737.0 False True 552981.6923746297 724068.8737157029 683626.0359734735 696628.5401995558 684655.2201001202 602926.0235218004 645411.9075479987 687092.7076807765 600778.4201026749 613887.3032553102 0.9007869839338404 1.1794817548369612 1.1136018489849098 1.1347824535635238 1.1152783523450367 0.9821444755814552 1.0513524292252348 1.1192489306054614 0.9786461080346152 1.0 19.22761430599717 2.775195780642903 24.9625244033909 1.0427403380897275 1.0977589062064201 0.11290406735459191 0.0793345058706494 1365.8289940065915 930647.6758173791 0.023751191758146505 0.025190761074227436 595.9307295052678 -2.775195780642903 0.05501856811669259 ENDPMDSHQSQES(ph)PNLENIANPLEENVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENDPMDSHQSQESPNLENIANPLEENVTK 29 0 Q96JQ2 Q96JQ2 CLMN Calmin 1 ENDPMDSHQSQES(1)PNLENIANPLEENVTK 227.49 5.5957e-35 100940000.0 96230.0 136930.0 135510.0 118120.0 157170.0 190540.0 151080.0 135930.0 153580.0 166850.0 True False 95711.9083721582 141487.63227406685 154588.63012596505 133073.9798888837 177184.66788042488 177368.41828291453 143771.6832183533 146073.78683855425 115732.26686656488 156201.49015252825 0.6127464486971095 0.9058020646019859 0.9896744901409822 0.8519379665260498 1.1343340432117959 1.1355104110064322 0.9204245303803604 0.9351625691657329 0.7409165351339105 1.0 17.253048691203567 4.739079219466613 2.941078732000568 0.9654295533610626 0.5524779249084449 0.4658152618519673 0.11206739420984695 0.36221195188216826 4.52089416395841 0.02842181276152276 0.3541131636379206 54837.69850044047 -4.739079219466613 -0.4129516284526177 ENDWYLAYK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENDWYLAYK 9 0 A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;P43246;P43246-2;A0A2R8Y7S8 A0A2R8YFH0 MSH2 DNA mismatch repair protein Msh2 0 ; 99.653 0.012078 360840000.0 620800.0 651130.0 535150.0 534200.0 538090.0 681730.0 651690.0 574170.0 848010.0 674230.0 False True 617457.6817773648 672802.4684336026 610494.4683928144 601829.6652272405 606612.5719906966 634603.609719803 620165.2650024403 617017.4809761834 639029.2982518281 631200.0641626561 0.9782281670019761 1.0659100127407874 0.9671964612403683 0.9534689544520595 0.9610464358799187 1.0053921818934888 0.9825177470872813 0.9775307640291717 1.012403728284721 1.0 19.267737826440815 -0.7599844076061784 7.6640456619228 1.000001375509875 0.9883805814347306 0.009899227383485809 0.0308985855640824 0.0 0.0 0.02999366720151057 0.007069575156946889 0.17378632218086018 0.7599844076061784 -0.01162079407514427 ENDYYTPTGEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENDYYTPTGEFR 12 0 P46977;P46977-2 P46977 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A 0 103.91 0.005106800000000001 79783000.0 35275.0 47280.0 56990.0 47691.0 53335.0 62109.0 48946.0 42014.0 49567.0 49763.0 False True 35085.08331942096 48853.68621863647 65013.69663403999 53728.67571013161 60126.89610868778 57815.55101885973 46578.29498812237 45149.29802276916 37351.87701377146 46587.08273575225 0.7531075409556751 1.0486530460758978 1.3955305379992518 1.153295560807861 1.290634497329121 1.2410210647186637 0.999811369437324 0.9691376959330468 0.8017646699544586 1.0 15.507642371845257 2.049866430965587 3.839668387286114 0.9305553746410002 1.1603058436851006 0.26651192460954576 0.1677049453870439 0.3097880378352351 9.484880616439444 0.07407336871727262 0.049537019222635044 112.16734260226497 -2.049866430965587 0.22975046904410035 ENEEDLKDKLDFAPPT(ph)PPHYPPHER ddPTM_BT-474_Trastuzumab_2h_R1 1 ENEEDLKDKLDFAPPTPPHYPPHER 25 2 Q86Y56;H0Y650;Q86Y56-2;H7C3B1 Q86Y56 DNAAF5 Dynein assembly factor 5, axonemal 1 ENEEDLKDKLDFAPPT(1)PPHYPPHER 64.39 0.048874 127180000.0 110350.0 54758.0 67560.0 49279.0 48608.0 70239.0 59873.0 43134.0 129530.0 68594.0 True False 109755.88786103761 56580.586928090015 77071.86075795293 55517.71634731032 54797.94067781191 65383.543254821256 56976.714252928694 46352.8781100139 97609.06711307565 64216.27219372208 1.709160063510625 0.8810942304063153 1.2001920716520142 0.8645428090224436 0.8533341909431029 1.018177185022168 0.8872628744478702 0.721824492866552 1.520005191497524 1.0 15.970651297435793 4.742739844610971 24.472717004760632 0.9679706078489813 1.709160460474885 0.49640514285631054 0.21464006699471963 244.79386246146743 1433389.3804497146 0.048961210532750786 0.37836532704518466 55301.87352051093 -4.742739844610971 0.7411898526259036 ENEFSFEDNAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENEFSFEDNAIR 12 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F2Z2R5;K7EMY3 Q14839-2 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4 0 ; 103.65 0.0023864 75711000.0 166322.0 208833.0 173890.0 193021.0 170577.0 211498.0 222067.0 171908.0 223152.0 191023.0 False True 165426.54083211126 215783.88016278544 198372.2005210247 217457.43880911125 192298.9698609099 196877.64107274005 211324.7708316789 184736.6478911362 168159.17968360262 178831.74859698192 0.9250401124518396 1.2066307121398194 1.1092672418479754 1.215988998123464 1.0753066576241892 1.1009098922162117 1.1816960494409958 1.0330193007700308 0.940320614224764 1.0 17.448243360160237 1.5253471122765898 4.627157136837021 0.9735060064483556 1.121035614793122 0.3586809025685469 0.07939973811712 0.16104562565393393 7.564945410040969 0.04495120271090284 0.019172048490883876 33.52332691634144 -1.5253471122765898 0.14752960834476636 ENENGEEEEEEAEFGEEDLFHQQGDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENENGEEEEEEAEFGEEDLFHQQGDPR 27 0 Q03252 Q03252 LMNB2 Lamin-B2 0 92.632 0.0058951 203950000.0 114330.0 108490.0 98133.0 96197.0 109360.0 139990.0 109210.0 104210.0 157180.0 131000.0 False True 113714.45998325705 112101.02406641022 111949.27341267308 108375.53033669943 123286.34777249648 130312.82080101405 103927.09507728594 111986.67936765785 118445.09510409356 122639.46784525755 0.9272256475112745 0.9140697202621232 0.9128323481795192 0.883692111852965 1.0052746472127156 1.0625683810487379 0.8474196513019587 0.9131373556591013 0.9657991606221228 1.0 16.90406381644606 3.260011934731873 24.99900404970871 0.9545063350626083 0.9100258333387571 0.18245987329835844 0.05535749026038002 561.4873480302443 654343.4173387443 0.016755864350603073 0.022667208954911013 1819.7508660154474 -3.260011934731873 -0.04448050172385121 ENEVEEVKEEGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENEVEEVKEEGPK 13 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 62.69 0.068155 422480000.0 139010.0 121250.0 115600.0 122910.0 112130.0 143060.0 150740.0 170750.0 216290.0 158070.0 False True 138261.58560546275 125285.73295282724 131875.47518678766 138470.39339775362 126409.09085342017 133170.59892701675 143448.13031727937 183492.2320509316 162988.2276375136 147981.83726946442 0.9343145628993524 0.8466291219556277 0.8911598721852046 0.9357255995248178 0.8542203096400147 0.8999117823123289 0.9693630851201727 1.2399645486006858 1.1014069742945791 1.0 17.17506059022852 1.9425497999269064 5.358573294531195 1.1351710112281483 0.8942725996542276 0.71610881019164 0.06148782653730677 0.09489473672326246 5.702444057392179 0.02593284292721799 0.015808647764876272 87.60921721094958 -1.9425497999269064 -0.24089841157392078 ENEVQSLHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENEVQSLHSK 10 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 0 ; 145.91 2.9587e-05 504570000.0 478520.0 592170.0 605060.0 597900.0 517950.0 654960.0 719660.0 637910.0 724230.0 696400.0 False True 475943.70148857054 611880.0204756764 690247.188724201 673594.0786959326 583907.8623698293 609684.1568100015 684847.296431826 685514.083441346 545753.220684805 651955.155781964 0.7300252130343492 0.9385308407321039 1.0587341515787372 1.0331908149234814 0.8956258067619425 0.9351627200167439 1.0504515385117412 1.0514742883183905 0.837102392464741 1.0 19.31441320767235 4.707137618177732 3.5255738168917308 0.988913931172604 0.70737213648407 0.5321110526888618 0.07041880628460942 0.19555999702558013 4.307924511794841 0.017368446830512762 0.13900535493587762 50949.2292157188 -4.707137618177732 -0.2815417946885339 ENFQNWLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENFQNWLK 8 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 ; 126.41 0.0028389 734310000.0 615040.0 616710.0 620300.0 586980.0 565220.0 619680.0 576540.0 552000.0 800410.0 681520.0 False True 611728.6929773674 637236.8195409332 707632.8482557471 661291.6078155839 637197.4166785886 576842.980169815 548650.5576033187 593193.0429992041 603159.680444506 638024.8101213735 0.9587851181852887 0.9987649530740186 1.109099265467642 1.036466916842598 0.9987031955032791 0.9041074438156728 0.8599204120274683 0.9297335050126956 0.9453545863361724 1.0 19.28325299990522 2.875388995976342 3.863421584972455 0.9186533260835226 1.0287726466178797 0.4763372269213969 0.048524239883561575 0.19302246258441436 5.047887728771931 0.015677510603993614 0.016840567973520265 750.5661877277797 -2.875388995976342 0.11011932053435713 ENFS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 3 ENFSPER 7 0 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 ENFS(1)PER;ENFS(1)PER;ENFS(1)PER 135.87 0.0031834 4520920000.0 2168360.0 2495540.0 2465620.0 2398520.0 2205840.0 2461380.0 2545950.0 2259370.0 2906110.0 2564410.0 True False 2156685.790687445 2578602.5403142157 2812757.8644467765 2702172.3860742035 2486740.64896199 2291230.5940652867 2422792.672026519 2427975.6622483917 2189938.1303789113 2400747.1582981404 0.8983394120588245 1.0740833458456136 1.1716177002332495 1.1255547577070715 1.0358194699373546 0.9543822997543445 1.0091827719767068 1.0113416791335716 0.9121902416126698 1.0 21.195052039249305 2.978678563612886 6.374998313376757 0.984343136105314 1.0761397693990977 0.25851377595665104 0.07133144084900049 0.24201827773079349 38.29697614821354 0.02229740248624251 0.02469980345372193 952.0912274903205 -2.978678563612886 0.09179663329378374 ENFSCLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENFSCLTR 8 0 A0A5K1VW95;P40925;P40925-3;B9A041;P40925-2;C9JF79;C9JRL4 A0A5K1VW95 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase 0 ; 119.07 0.004107100000000001 1185510000.0 608250.0 740410.0 682930.0 652800.0 678960.0 721210.0 700700.0 612490.0 782620.0 712590.0 False True 604975.249582928 765054.0992627041 779080.6078660269 735444.4130669081 765421.5314887912 671354.4502457263 666804.4640660589 658197.1139611999 589753.7875707198 667111.8961210075 0.9068572350465048 1.146815254998737 1.1678409759982895 1.1024303678936431 1.147366035502313 1.006359583975923 0.9995391596870986 0.9866367513281601 0.8840402801987275 1.0 19.347569242502516 2.5534608908714915 3.7863716577911943 0.971880391543627 1.1014745232877314 0.3901560933346776 0.07497411614722159 0.24232714307726996 6.6260182218876675 0.025504717231294112 0.023293438699255715 357.65219179664416 -2.5534608908714915 0.1295941317441044 ENFSGGT(ph)SLWQNI ddPTM_BT-474_Trastuzumab_2h_R1 1 ENFSGGTSLWQNI 13 0 E9PF82;Q13557;D6R938;Q13557-6;Q13557-11;Q13557-3;Q13557-4 E9PF82;Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 ENFS(0.351)GGT(0.628)S(0.021)LWQNI 100.22 0.0036172 0.0 21623.0 23780.0 21233.0 23072.0 21092.0 23708.0 24246.0 20494.0 32172.0 28961.0 True False 21506.584170541155 24571.502924686443 24222.42183945552 25992.91283437454 23777.941177921497 22069.12176262905 23073.1283512854 22023.36634642336 24243.64168271341 27112.684185240447 0.7932296198931447 0.9062733426468572 0.8933981480388311 0.9586993547663759 0.8770043207623718 0.8139777534325796 0.8510086346908399 0.8122901515746052 0.8941808017632986 1.0 14.726680328174723 2.995107764786218 24.982451505539267 0.8556296195324216 0.8931360305988806 0.0 0.0635736103981219 599.3387974643646 3060584.2595804227 0.01779148390679506 0.020739034969139907 988.798422275969 -2.995107764786218 0.03750641106645902 ENGDKSEAQKPSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENGDKSEAQKPSEK 14 2 A0A494C039;Q9Y4L1 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 61.265 0.048576 188340000.0 361390.0 260710.0 248760.0 194060.0 241210.0 341550.0 353180.0 345190.0 554290.0 316290.0 False True 359444.3163942033 269387.57474747667 283783.2457393187 218627.97610258003 271926.6637363192 317939.4524222179 336095.33412137954 370949.83063930296 417692.6566054709 296104.10141050734 1.21391198123218 0.9097731961976714 0.9583901215400341 0.7383483547209723 0.9183481837670683 1.0737421430763596 1.1350580168270952 1.2527682962588633 1.4106277306385495 1.0 18.175744948213406 2.2967794207393366 1.942016186013822 1.2395207368423964 0.9372642230961272 0.3997890604658211 0.14485981497505387 0.3019466144238432 2.3175627622849295 0.06762046006785524 0.04643272900270266 198.0520858779354 -2.2967794207393366 -0.30225651374626916 ENGEEGCHQNGLALPVVEEGEVLS(ph)HSLEAEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 ENGEEGCHQNGLALPVVEEGEVLS(0.5)HS(0.5)LEAEHR;ENGEEGCHQNGLALPVVEEGEVLS(0.5)HS(0.5)LEAEHR;ENGEEGCHQNGLALPVVEEGEVLS(0.578)HS(0.422)LEAEHR;ENGEEGCHQNGLALPVVEEGEVLS(0.5)HS(0.5)LEAEHR 94.495 4.0724e-05 677054000.0 288209.0 290992.0 275844.0 292494.0 316315.0 300933.0 290775.0 188146.0 363272.0 281683.0 True False 286657.31476703024 300677.49281162163 314680.437520971 329523.71040991426 356595.8403041078 280130.21003008453 276709.1023816305 202186.40990602935 273748.483195408 263705.7497790504 1.0870347537253553 1.1402007467169317 1.1933013890847297 1.2495886444873134 1.3522490146797583 1.0622832845502823 1.049310083733385 0.7667121785377607 1.0380831037046863 1.0 18.008569502170527 2.255214999190811 2.4468564610291903 0.9143058771747293 1.2006260468153802 0.5522958676176057 0.1003721051653388 0.19043196838837131 2.335796290852363 0.044066600060397705 0.03119753149886168 179.97616737166425 -2.255214999190811 0.2863201696406509 ENGEEGCHQNGLALPVVEEGEVLSHS(ph)LEAEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 ENGEEGCHQNGLALPVVEEGEVLS(0.213)HS(0.787)LEAEHR 207.92 5.994100000000001e-27 71191000.0 31043.0 30785.0 30680.0 32893.0 25999.0 32464.0 31329.0 23633.0 41430.0 30750.0 True False 30875.867937201536 31809.66011507451 34999.4773246595 37057.25042740474 29309.818541853823 30219.840092035993 29813.496581597792 25396.61446594238 31220.131633557663 28787.5086736005 1.072543938667265 1.1049813471439947 1.2157869484814317 1.2872684068485571 1.0181436286889358 1.049755310008782 1.0356400381717703 0.8822095289278113 1.0845027260795232 1.0 14.81315532024785 3.109652217838353 8.30838644354652 0.9991757839736534 1.1684410491379347 0.5225449789680645 0.0738045237317492 0.20110816998603578 14.075017078822775 0.02297676983288008 0.02750823908314852 1287.218336954031 -3.109652217838353 0.1692652651642813 ENGKGDIKS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 3 ENGKGDIKSK 10 2 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 ENGKGDIKS(1)K;ENGKGDIKS(1)K;ENGKGDIKS(1)K 60.55 0.076679 604951000.0 1025620.0 765588.0 670310.0 664654.0 661005.0 864680.0 1144380.0 1023050.0 2433380.0 1064830.0 True False 1020098.1758770947 791070.1337722806 764683.8215610333 748799.1282514906 745180.0686664147 804906.7068377796 1089021.9674438653 1099395.1859426384 1833706.1046214462 996871.6377531721 1.023299427172261 0.7935526539357233 0.7670835367375262 0.7511489944073373 0.7475185775632661 0.8074326486526809 1.0924395139763319 1.102845285497882 1.8394606037286783 1.0 19.927048222290704 1.765838495117454 1.8457550574272872 1.3979856139377669 0.811341566167948 0.5213646121884296 0.21695611225274875 0.23263210099499668 1.5663793850219658 0.14327405908102062 0.05957957763259633 58.32281737848456 -1.765838495117454 -0.5866440477698189 ENGLPLEYQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 ENGLPLEYQEK 11 0 O75223;M0QZK8;O75223-3 O75223 GGCT Gamma-glutamylcyclotransferase 0 ;;; 234.61 3.9017e-15 784600000.0 1595100.0 1399160.0 1220190.0 1176970.0 1191350.0 1613180.0 1535020.0 1496210.0 1911920.0 1586560.0 False True 1586512.15883227 1445730.1947899195 1391982.1459183935 1325974.281322548 1343061.360815321 1501664.6636172552 1460765.218254149 1607864.7878004338 1440752.934415437 1485304.3824776462 1.0681394181210173 0.973356176582666 0.937169621486216 0.8927289900745337 0.9042330829018032 1.0110147666246823 0.9834786966813069 1.0825153461934474 0.9700051729545882 1.0 20.502327181220608 2.5923115131024432 7.341514194926757 1.0188688640671608 0.9517406709114261 0.1979302052608808 0.05293500073946274 0.3812766229630843 21.958171124354244 0.018168677428342345 0.01709325299699106 391.12134083837043 -2.5923115131024432 -0.0671281931557347 ENGSGHEASLQLRPPPEPS(ph)TPVSGQDDLIQHQDMR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMR 35 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 ENGSGHEASLQLRPPPEPS(0.5)T(0.5)PVSGQDDLIQHQDMR;ENGSGHEASLQLRPPPEPS(0.497)T(0.497)PVS(0.005)GQDDLIQHQDMR 217.01 9.2221e-37 1130750000.0 147450.0 220664.0 224287.0 202562.0 224639.0 225832.0 217270.0 211323.0 232939.0 188864.0 True False 146656.14558323493 228008.6678457954 255864.66006244838 228206.32843085012 253245.44511033138 210220.76539134653 206759.82004799868 227092.99533645116 175534.3046726837 176810.5378253948 0.8294536478819031 1.2895649244105583 1.4471120511783164 1.2906828475133652 1.4322983699106109 1.188960612737603 1.1693862967159774 1.2843860899326693 0.992781916912829 1.0 17.43184473567853 1.2349060111984813 24.894349437331496 0.9963907726073183 1.2539003807920723 0.2641850758796088 0.16255822978459972 117.34420027289094 799259.337982725 0.13444687178257603 0.03872525388306089 17.17536642439189 -1.2349060111984813 0.257509608184754 ENGSGHEASLQLRPPPEPST(ph)PVSGQDDLIQHQDMR ddPTM_BT-474_Trastuzumab_2h_R1 3 ENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMR 35 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 ENGSGHEASLQLRPPPEPS(0.105)T(0.894)PVSGQDDLIQHQDMR;ENGSGHEASLQLRPPPEPS(0.153)T(0.846)PVSGQDDLIQHQDMR;ENGSGHEASLQLRPPPEPS(0.127)T(0.873)PVSGQDDLIQHQDMR 255.2 4.6679999999999994e-60 1208140000.0 185595.0 220256.0 221194.0 234905.0 278320.0 305657.0 269814.0 223481.0 273387.0 226696.0 True False 184595.77714154296 227587.0878124361 252336.19254728587 264643.94891464786 313762.4022681167 284527.6510291842 256762.06603042636 240158.28703352396 206014.43704811562 212228.0671957901 0.8697990778535665 1.0723703552484254 1.1889859615716813 1.2469790278516824 1.4784208630551046 1.340669284646005 1.209840288436268 1.1316047411013124 0.9707219208572346 1.0 17.695255939956674 1.413872930411283 2.8307576886090486 0.9837364965265222 1.2125683882795264 0.23829807288920068 0.15071902720348157 0.40003422343271805 5.649419572927872 0.13446280713702002 0.0436128460505593 25.934204459952955 -1.413872930411283 0.22883189175300422 ENGTMEIYQLPDWR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENGTMEIYQLPDWR 14 0 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 157.52 1.2275e-05 33137000.0 24787.0 25285.0 24066.0 22294.0 20886.0 26077.0 26593.0 26580.0 31333.0 28045.0 False True 24653.54954609459 26126.59593989474 27454.2836145781 25116.418114144686 23545.708298979167 24274.35836865519 25306.594994874715 28563.534570505188 23611.40199068941 26255.144089467507 0.938998828651814 0.9951038871036196 1.045672555481866 0.9566284621618347 0.896803621368231 0.9245562807020767 0.9638718762555445 1.0879214554363734 0.8993057478652856 1.0 14.68031249281567 1.9534671781598996 24.9977515492558 1.0106077677332446 0.960663570414619 0.05737474321937763 0.057234785072627394 871.8226337071874 468347.5598197427 0.024406674722092354 0.015739914921057696 89.83946937543705 -1.9534671781598996 -0.04994419731862554 ENGVTHPIDYHTTDYVDEIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENGVTHPIDYHTTDYVDEIKK 21 1 Q99536-3;Q99536;K7ENX2;K7EM19;Q99536-2 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 0 204.31 2.183e-22 167890000.0 231740.0 185600.0 196800.0 182780.0 182500.0 257740.0 267000.0 158490.0 374150.0 258680.0 False True 230492.3375887347 191777.5838024307 224507.72938373493 205919.9292591445 205740.29323775234 239923.04045469893 254084.18996094997 170317.32859591278 281945.74585314 242170.82093290956 0.9517758444259052 0.7919103674986522 0.9270635021959646 0.8503085898866077 0.8495668158747752 0.9907182026738335 1.0491940729363958 0.7032941786289649 1.1642432592291936 1.0 17.88566552018176 2.749226196982012 23.751557991822388 0.9474653173420031 0.8711754325246435 0.1424324319600988 0.1176422043205077 963.2420909466217 2145075.5706045195 0.036163933189526876 0.03796945031559351 561.3402671368832 -2.749226196982012 -0.07628988481735965 ENHGQADHS(ph)PSMTATHFPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ENHGQADHSPSMTATHFPR 19 0 Q9Y3L3;Q6ZT62-2;Q6ZT62;Q9Y3L3-2 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 ENHGQADHS(0.948)PS(0.052)MTATHFPR;ENHGQADHS(0.963)PS(0.037)MTATHFPR;ENHGQADHS(0.998)PS(0.002)MTATHFPR 192.99 1.0488e-14 1727640000.0 406780.0 420260.0 360660.0 390470.0 384030.0 404510.0 401440.0 237912.0 451770.0 345002.0 True False 404589.94167750626 434248.1000474653 411437.79308708245 439903.4619642088 432933.944175858 376547.17581411684 382020.8135502768 255666.20153265746 340437.3369078526 322983.6769889277 1.252663742791485 1.34448930700096 1.273865592598313 1.3619990522904637 1.3404205073518298 1.1658396465250018 1.1827867498188553 0.7915762304651143 1.0540388297069367 1.0 18.301101729999413 2.106226231680365 2.0677568386878753 0.9331051474011682 1.3079845204004334 0.7545937764319008 0.085695715482723 0.13578920459636837 1.126128891943951 0.04293858066249562 0.02492027751783312 127.7103901587405 -2.106226231680365 0.3748793729992652 ENIAEWK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENIAEWK 7 0 P11908;P11908-2;H7C540;D3YTJ7 P11908 PRPS2 Ribose-phosphate pyrophosphokinase 2 0 ; 107.47 0.017381 399590000.0 850220.0 859260.0 720210.0 668600.0 690320.0 881490.0 952250.0 803500.0 1020270.0 895490.0 False True 845642.5099883231 887859.9496663621 821609.3078224584 753244.6914468976 778228.1601527957 820554.6711042628 906186.0295517414 863461.2500903268 768838.1294175687 838339.0615324387 1.0087118074189863 1.0590702382916548 0.980044167714911 0.8984964747676277 0.9282976254622283 0.9787861603446378 1.0809302239779714 1.0299666205603804 0.9170968701042916 1.0 19.67717432630723 2.44336714335034 24.998971914744654 1.0161924621381893 0.9734277083019439 0.06206712596529074 0.05544153650886743 447.7239289410988 331590.932332828 0.020916570021133753 0.017500133715589547 277.5665601966309 -2.44336714335034 -0.04276475383624534 ENIAYLTHTER ddPTM_BT-474_Trastuzumab_2h_R1 1 ENIAYLTHTER 11 0 Q9UBB9;Q9UBB9-2 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 71.933 0.047675 170860000.0 100510.0 124880.0 115140.0 118650.0 102250.0 113730.0 122930.0 107070.0 127960.0 114690.0 False True 99968.86532771088 129036.55530844578 131350.7111851793 133671.07783454127 115270.93141676801 105868.11279162303 116983.40626179636 115060.10709044366 96425.97257615355 107370.38600895093 0.9310655297390565 1.2017890603251502 1.2233420784594111 1.244952940966402 1.0735821645193533 0.9860084957019466 1.0895313932469615 1.07161864055189 0.8980686030887046 1.0 16.71223661068969 3.022031757762886 11.33983973786951 1.0254213343321483 1.1592522908042946 0.32165150320580027 0.09486488702462285 0.7071160829658394 358.25009534430177 0.027692667672505843 0.032964941431003286 1052.0388012967537 -3.022031757762886 0.13383095647214627 ENIEKDEDDVDQELANIDPTWIES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENIEKDEDDVDQELANIDPTWIESPK 26 1 P78362;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 ENIEKDEDDVDQELANIDPT(0.015)WIES(0.985)PK 80.23899999999998 0.011141 43076000.0 29073.0 22733.0 16922.0 16883.0 16293.0 30529.0 24387.0 21625.0 39855.0 22362.0 True False 28916.474198313954 23489.6541626113 19304.470511339252 19020.38606894701 18367.816973823017 28418.602087535928 23207.30764261309 23238.767309525007 30033.269279638902 20934.838014928595 1.3812609477892148 1.1220365854209557 0.9221217999190282 0.9085518624688477 0.8773804201744938 1.3574789576719282 1.1085496637740402 1.1100524060875696 1.4346071967799432 1.0 14.353618134696529 2.7406211683437016 24.98166729605129 1.1927788942078053 1.0325980689826681 0.16534620559987978 0.17831406097291988 362.73047917215735 4397691.148195905 0.057156856163302655 0.057981598427269264 550.3274406817839 -2.7406211683437016 -0.1601808252251371 ENIESLAHALVEIIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENIESLAHALVEIIK 15 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494BZX8 Q92878-2 RAD50 DNA repair protein RAD50 0 104.45 0.0013925 54766000.0 110060.0 187210.0 145080.0 149070.0 198080.0 174160.0 225400.0 199540.0 340990.0 208550.0 False True 109467.44918881565 193441.1716791654 165506.00294203393 167942.2467155085 223304.31388785728 162120.72912854195 214496.5408883828 214430.68804358906 256957.58353190476 195240.16045136206 0.5606810040298345 0.9907857647318169 0.8477047066516038 0.8601828964248676 1.1437417044301526 0.8303656827250417 1.0986291979708644 1.0982919064800079 1.3161102866227037 1.0 17.574890316910473 5.56441946321431 0.35130054294315816 1.133293586382106 2.1493910987988702e-13 0.5174559069871164 0.13860990342347307 9.449837848985396 0.5976694774942858 0.11941617434081057 5.081887721100406 366791.6692591873 -5.56441946321431 -1.1332935863818911 ENIKPNETS(ph)PSFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENIKPNETSPSFSK 14 1 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 ENIKPNET(0.273)S(0.329)PS(0.329)FS(0.07)K;ENIKPNET(0.175)S(0.821)PS(0.004)FSK 110.6 0.00042393 636870000.0 1354580.0 1024180.0 1020926.0 796114.0 789488.0 1403300.0 1251610.0 1269020.0 1705200.0 1258260.0 True False 1347287.0917879865 1058269.2121701157 1164663.506752129 896901.9507725929 890024.6171380093 1306293.17401288 1191064.8426854871 1363720.716352989 1284976.3085093538 1177956.7695494157 1.14374918215661 0.8983939305131867 0.988714982467165 0.761404810395266 0.7555664521359775 1.1089483143872545 1.0111278049202819 1.157700139432647 1.0908518391560962 1.0 20.16785516324543 2.7084986537430282 24.887203684728537 1.0842681547798405 0.9051111896115704 0.34710106558898346 0.11202380185187846 716.9637809035371 593547.5238620572 0.037231401166985104 0.03510659943455252 511.09149471711254 -2.7084986537430282 -0.17915696516827007 ENILHVSENVIFTDVNSILR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENILHVSENVIFTDVNSILR 20 0 P07814;V9GYZ6;V9GZ76 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 195.56 1.84e-21 220660000.0 118043.0 177919.0 202234.0 211197.0 212342.0 206281.0 195943.0 199065.0 167413.0 211190.0 False True 117407.46960381018 183840.92636069344 230706.78935056063 237934.5185454835 239382.49505036086 192021.2800032429 186464.4885150502 213920.24113158838 126156.30936926822 197711.67339114432 0.593831753027229 0.9298435606125817 1.1668850169212832 1.203441933723175 1.2107656110763716 0.9712187283112829 0.94311319770258 1.0819808333136594 0.6380822498006274 1.0 17.59303852833819 -2.989488099516695 10.429309211830574 0.9999972897043592 0.9952438258918903 0.0 0.20568684114097402 0.0 0.0 0.0 0.04562357891216511 0.0010244998531431374 2.989488099516695 -0.004753463812468883 ENINQKPVVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENINQKPVVLR 11 1 O75165 O75165 DNAJC13 DnaJ homolog subfamily C member 13 0 66.498 0.065098 0.0 120960.0 159660.0 130280.0 143080.0 173590.0 235730.0 198240.0 228370.0 273360.0 250470.0 False True 120308.76479991928 164974.18658349177 148622.2915859401 161193.9133296772 195695.65755146 219434.53994873233 188650.3738496583 245412.1290393628 205994.0908363339 234484.79016184452 0.5130770516794738 0.7035602883650764 0.6338248697638726 0.6874386744590939 0.8345771911960186 0.9358156654735503 0.8045313886646946 1.0466014826376417 0.8784965996905558 1.0 17.839134819907805 3.323364895700017 0.5798359619980962 0.9839827589449427 0.5344149385896594 0.8052737711926641 0.07093490851965807 0.43491270459819975 0.2933920518569317 0.048173750859134896 0.10777752562381845 2105.5467843435945 -3.323364895700017 -0.4495678203552833 ENIQS(ph)S(ph)LLETLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENIQSSLLETLYR 13 0 A0A494C0J1;O14830 A0A494C0J1 PPEF2 Serine/threonine-protein phosphatase with EF-hands 2 2 ENIQS(0.667)S(0.667)LLET(0.667)LYR 61.375 0.040062 6914900.0 4943.3 6834.8 6214.2 5402.9 6787.7 6528.8 7352.0 6532.2 6007.1 6579.6 True False 4916.6858220522645 7062.29218627615 7089.105345205322 6086.906586028181 7652.073361150095 6077.479423142084 6996.355672632609 7019.665933839496 4526.7306960160295 6159.684294921036 0.7982041914236279 1.1465347651176472 1.150887773753379 0.9881848313309071 1.242283369532365 0.9866543693080612 1.135830237014168 1.1396145642768667 0.7348965432771518 1.0 12.588640694377116 1.2514953703976632 24.975764415143814 0.8674482220954444 1.0841342200945183 0.2773252718956756 0.13218024062433148 220.50573905395584 425780.35731315543 0.08268772714780123 0.029778423109495737 17.844129665015977 -1.2514953703976632 0.21668599799907395 ENISEWR ddPTM_BT-474_Trastuzumab_2h_R1 4 ENISEWR 7 0 B1ALA9;P60891;A0A2R8Y7H4;P60891-2 B1ALA9 PRPS1 Ribose-phosphate pyrophosphokinase 1 0 ;;; 105.14 0.018599 1621610000.0 1846600.0 2228590.0 2079060.0 2193940.0 2102420.0 2219700.0 2210780.0 2012740.0 2256890.0 2196510.0 False True 1836658.1107765464 2302767.270938894 2371773.576486526 2471692.579050265 2370150.7249803585 2066257.3636117647 2103836.1254002596 2162940.8792866296 1700709.7002766079 2056326.8512731777 0.8931742099459417 1.119844965071157 1.153403008387523 1.2019940203182742 1.1526138091874238 1.0048292480023002 1.023103950667019 1.05184682967469 0.8270619523465402 1.0 20.971638167140487 1.8509230708242423 1.1603530245078133 0.9380391690677629 1.104858012244216 0.29374192626957296 0.09517038592007358 0.6013501798970972 1.4966648292610965 0.07834245909616785 0.03289034912572874 70.9452087346425 -1.8509230708242423 0.16681884317645312 ENISNAQALLEYHLSYLQEVEQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENISNAQALLEYHLSYLQEVEQLR 24 0 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 149.73 1.3948e-07 150340000.0 29614.0 47330.0 57265.0 71675.0 70850.0 54509.0 63353.0 55206.0 66312.0 72603.0 False True 29454.561514424706 48905.35043841079 65327.41424369714 80749.04765099665 79872.32753914934 50740.92113038411 60288.373358037716 59325.75205038782 49970.2961352758 67969.41438144453 0.4333502323431188 0.719519961786839 0.9611295733266072 1.1880203527697442 1.1751216082414015 0.7465257953470943 0.886992684970025 0.8728301191099213 0.7351879752095901 1.0 16.052598072282866 4.547340633012057 2.6141291768754913 0.9433253178123778 0.4184670778805591 0.5511881931105901 0.1446856271218286 0.2770391500115059 3.132717576534394 0.03966161678683623 0.26054852583775207 35264.73567914406 -4.547340633012057 -0.5248582399318187 ENIVEAIIHSPELIR ddPTM_BT-474_Trastuzumab_2h_R1 7 ENIVEAIIHSPELIR 15 0 O95373;E9PLB2 O95373 IPO7 Importin-7 0 ;;;;;; 183.7 4.9483e-07 1380096900.0 1024158.0 1225171.0 1119596.0 1166402.0 1104110.0 1221389.0 1240697.0 1125166.0 1427942.0 1285057.0 False True 1018644.0471226518 1265950.0761034903 1277225.3850971144 1314068.373606107 1244711.8639273155 1136957.2532704445 1180679.7461871938 1209131.6003971782 1076044.827542496 1203043.5620673504 0.8467224955446998 1.0522894731492842 1.061661792946456 1.0922866095953898 1.0346357382008353 0.94506740164642 0.9814106350049986 1.0050605302432822 0.8944354647419287 1.0 20.19825745260349 2.7498425138699503 23.420804175854705 0.9701494093845335 1.0260570166811704 0.1187578812298703 0.06868408556696741 664.9033984017965 1380311.7297602089 0.02115521710949342 0.022227839235713732 562.1374430148134 -2.7498425138699503 0.05590760729663691 ENKPSIIFIDEIDSLCGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ENKPSIIFIDEIDSLCGSR 19 1 O75351 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 0 ;;; 248.89 5.6041e-25 1012300000.0 1753030.0 1739310.0 1630850.0 1557530.0 1562060.0 2017240.0 1937550.0 1776870.0 2434430.0 2059280.0 False True 1743591.8812599445 1797201.8819149039 1860459.5043976838 1754713.1383028522 1760979.0819450072 1877792.9468721887 1843823.3043402226 1909469.0621630386 1834497.346190725 1927854.987361691 0.9044206606255617 0.9322287691225217 0.9650412072454478 0.9101893813622429 0.913439596592762 0.9740322582260126 0.9564118237251509 0.9904630144283757 0.9515743446561156 1.0 20.878565105911616 2.7282824895662268 24.376567206755343 0.9737899815657103 0.926856566934411 0.5913525351024436 0.0205150100442781 373.94632244848754 886883.4433297899 0.006577879010356159 0.006269020586952718 534.912183242953 -2.7282824895662268 -0.0469334146312993 ENLATVEGNFASIDER ddPTM_BT-474_Trastuzumab_2h_R1 2 ENLATVEGNFASIDER 16 0 Q13561;Q13561-3;Q13561-2;H0YI98 Q13561 DCTN2 Dynactin subunit 2 0 ; 249.3 3.5021e-20 85162000.0 54778.0 61402.0 47139.0 46712.0 55561.0 51441.0 50225.0 56578.0 62227.0 52385.0 False True 54483.08133440793 63445.72845170721 53775.761460466936 52625.734410510726 62636.36401415214 47885.00474908892 47795.42487186787 60800.13765726264 46891.989649080184 49041.74445094509 1.110953167436889 1.2937086386714889 1.0965303551601255 1.0730803930343586 1.277205056945014 0.9764131615869982 0.974586556962225 1.2397629476267733 0.9561647974407754 1.0 15.581722677215305 2.728914341119029 24.980467863121532 1.0556705381619076 1.1676529034881358 0.3056154873738015 0.10239918596545307 1076.96965959133 2788969.2585224165 0.03378252915607201 0.03222554651470424 535.6909890829234 -2.728914341119029 0.11198236532622818 ENLPSHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENLPSHFK 8 0 Q8TBX8;F8VNT5;Q8TBX8-2;F8VU68 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 ; 113.62 0.0053119 343330000.0 477870.0 542210.0 482350.0 477090.0 452530.0 570160.0 550300.0 505010.0 777030.0 536040.0 False True 475297.20101634774 560257.1320771333 550260.6873386416 537489.5450828603 510157.01314454863 530746.181212273 523679.8866498538 542696.410588819 585541.3681685562 501829.468273067 0.9471289174228368 1.116429320113727 1.09650931666536 1.0710601490432785 1.0165943719888333 1.0576225884835269 1.0435415210907804 1.0814359157830773 1.16681343999898 1.0 18.936837665158297 1.57750098748596 5.647988623284563 1.0958253399147455 1.0542585051337166 0.0512571513083131 0.05763104951649 0.3469151206034734 23.174942249618624 0.03042867158160457 0.014055494418630321 37.80079968042474 -1.57750098748596 -0.04156683478102896 ENLVRPGIDHLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ENLVRPGIDHLGR 13 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 ;;; 193.45 1.1151e-06 720520000.0 356695.0 440048.0 441453.0 435541.0 412053.0 405187.0 430854.0 424816.0 497691.0 473586.0 False True 354774.5937525402 454694.73166536645 503605.74522173754 490680.4459429747 464525.5071205236 377177.3763976033 410011.94599788514 456517.9270919381 375041.7217677277 443361.33602262626 0.8001929012015491 1.0255624356972837 1.1358810620239488 1.106728093037715 1.0477357166228345 0.8507223019969307 0.9247805631318308 1.0296746468407438 0.8459053401728923 1.0 18.75812343778468 2.776880665707499 24.803235491991803 0.9397002979487218 1.0342484777193204 0.1715904320277002 0.09964460076822379 931.2197432964321 602744.3682807675 0.0314801437543574 0.0333891047362451 598.2471876889895 -2.776880665707499 0.0945481797705986 ENPEDVLS(ph)PTSVATYLSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENPEDVLSPTSVATYLSSK 19 0 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-3;Q96SN8-2;Q96SN8;Q96SN8-4 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 ENPEDVLS(0.99)PT(0.009)S(0.001)VATYLSSK;ENPEDVLS(0.694)PT(0.12)S(0.182)VAT(0.003)YLSSK 155.88 2.2554e-08 54722000.0 85648.0 92052.0 86275.0 78127.0 76549.0 89211.0 79448.0 80353.0 95181.0 80194.0 True False 85186.88068438729 95115.89517339082 98421.77008425687 88017.87018945822 86297.06140853 83044.05355010545 75604.79671916692 86349.34888426642 71724.91791005676 75075.9502624624 1.1346760232348374 1.2669289544903475 1.3109626949799298 1.1723843638575524 1.1494634580959557 1.106133898535908 1.0070441526861225 1.1501599191537728 0.9553647694009789 1.0 16.196063210141276 2.9297908032307496 1.2532545733173175 1.0474967419325998 1.2385771438405941 0.6305328193852084 0.06573818825689602 0.3035011628459982 0.996109036564704 0.027783337253298342 0.031344342365687256 850.7281493871928 -2.9297908032307496 0.19108040190799436 ENPEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENPEKR 6 1 Q1KMD3;H3BQZ7;Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;Q7Z6E9-4 Q1KMD3;Q7Z6E9 HNRNPUL2;HNRNPUL2-BSCL2;RBBP6 Heterogeneous nuclear ribonucleoprotein U-like protein 2;E3 ubiquitin-protein ligase RBBP6 0 ; 120.49 0.032252 418390000.0 766940.0 731050.0 605070.0 607100.0 602490.0 418650.0 680850.0 716980.0 988550.0 773810.0 False True 762810.8802550453 755382.5573209432 690258.5966372801 683958.7977526349 679213.5302619914 389709.7108960957 647914.6844004233 770484.68835067 744935.098391345 724424.7833079281 1.052988381722441 1.0427342834291962 0.9528368058935869 0.9441405284748623 0.9375901348384447 0.5379574524170351 0.8943850339325249 1.0635813490979966 1.0283125530158714 1.0 19.46647637763245 4.11895788797464 1.7589250947733084 0.9099620394088362 1.0601512475064896 0.12888092684717978 0.1364083422576658 0.9079281544568976 5.273718192462196 0.04176911767147264 0.1528959681571731 13150.973055978404 -4.11895788797464 0.15018920809765335 ENPETEEDVGPVVQHIYELR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENPETEEDVGPVVQHIYELR 20 0 P06756-3;P06756-2;P06756 P06756-3 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain 0 80.293 0.0065182 38241000.0 19068.0 28860.0 21715.0 23867.0 24956.0 30990.0 22783.0 22513.0 28332.0 27532.0 False True 18965.340006653965 29820.587653761577 24772.283249836426 26888.559752861343 28133.998674199174 28847.7342426132 21680.89925048811 24193.034378697626 21349.958229349642 25774.884188668915 0.7358069921024691 1.1569630123448322 0.9611016316700561 1.043207781499248 1.0915276463809434 1.1192187724860918 0.84116378920606 0.9386282476230602 0.8283241186680269 1.0 14.653678324861227 2.228767483932716 24.977783914323073 0.8993929294942259 1.0261944407497927 0.1863440953474078 0.11788825896958734 304.38879541256983 776350.1215819248 0.041272073514962065 0.030855497847764337 169.3430915058952 -2.228767483932716 0.12680151125556682 ENPLLPEEEEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENPLLPEEEEQR 12 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 172.13 8.5138e-05 99411000.0 94313.0 116290.0 104310.0 101370.0 110950.0 107540.0 112050.0 103220.0 125120.0 118600.0 False True 93805.22928715941 120160.64235121061 118995.94132122677 114203.43160629984 125078.82484782815 100106.0129219305 106629.7134274324 110922.80054053974 94285.85252210306 111030.84646143143 0.8448573732142477 1.0822275627066447 1.0717376757328618 1.0285739075759497 1.126523203543049 0.9016054196858179 0.9603611683215634 0.999026883750461 0.849186109329131 1.0 16.76060101456725 2.7192833234745595 24.961602955211276 0.9482582083436182 1.0357943615942475 0.22802484011559876 0.08098251707356882 1238.1397101658217 1603228.6969839262 0.02547687659956376 0.0240587713092722 523.942132603421 -2.7192833234745595 0.08753615325062936 ENPPGPPIAASAPGPSQSLGLNVHNMTPAT(ph)SPIGASGVAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155-2;O95155;O95155-4 O95155-2 UBE4B Ubiquitin conjugation factor E4 B 1 ENPPGPPIAASAPGPS(0.013)QS(0.013)LGLNVHNMT(0.015)PAT(0.445)S(0.365)PIGAS(0.149)GVAHR 62.862 0.012342 168230000.0 40832.0 58681.0 54019.0 50243.0 49633.0 50513.0 49979.0 50459.0 51323.0 48224.0 True False 40612.16504886167 60634.16161158639 61624.4056584349 56603.75864846913 55953.46835216089 47021.155204811905 47561.32483167916 54224.50680561027 38675.134342965954 45146.30303335643 0.8995679008058599 1.343059288083605 1.3649933996345966 1.253785024360629 1.2393809590747566 1.0415283654581913 1.0534932350172368 1.2010841012949918 0.8566622678802904 1.0 15.462320231844346 2.7413174326404395 24.39884337604071 1.0578474401465825 1.2368998669885551 0.2910954848944952 0.14366130667450844 240.13422615269397 2125282.758044749 0.044484923108966526 0.04526566882457098 551.2104375465823 -2.7413174326404395 0.17905242684197265 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGAS(ph)GVAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155-2;O95155;O95155-4 O95155-2 UBE4B Ubiquitin conjugation factor E4 B 1 ENPPGPPIAASAPGPS(0.038)QS(0.198)LGLNVHNMT(0.198)PAT(0.162)S(0.162)PIGAS(0.243)GVAHR 102.04 1.8031e-05 163910000.0 22716.0 27661.0 32151.0 39897.0 29733.0 37807.0 32070.0 29231.0 31378.0 34557.0 True False 22593.699579984866 28581.6796635724 36677.581338498305 44947.9561092684 33519.321308701874 35193.491078105115 30518.651580702895 31412.365652010416 23645.3123436585 32351.542674263816 0.6983809028049388 0.8834719243948016 1.133719702574676 1.389360518656974 1.0360965362980061 1.087845838835442 0.9433445535498678 0.9709696371604396 0.7308867024282195 1.0 14.981546887917016 1.7794434441830411 1.9213920518006367 0.8755092072987488 1.0487200323377195 0.10441135655424427 0.17904489628005288 0.7185497867620898 5.219630131232194 0.13143411466638363 0.05592515422033707 60.178789022077375 -1.7794434441830411 0.17321082503897067 ENPPVEDS(ph)S(ph)DEDDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENPPVEDSSDEDDKR 15 1 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 2 ENPPVEDS(1)S(1)DEDDKR;ENPPVEDS(1)S(1)DEDDKR 101.6 0.0059789 1491820000.0 1458820.0 1336570.0 1458450.0 859130.0 1395780.0 2015510.0 1444770.0 1356170.0 1991070.0 1474860.0 True False 1450965.8752101378 1381056.9244763746 1663787.0829253471 967895.7699114165 1573524.3095637828 1876182.5377002056 1374880.9555426307 1457374.2918917222 1500397.477471099 1380733.1721088255 1.050866238691176 1.0002344785901354 1.2050026149398634 0.7010013154338336 1.1396295398339007 1.3588306383880593 0.9957615151975696 1.055507553038536 1.0866672198361884 1.0 20.39700311377962 ENPPVEDS(ph)SDEDDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENPPVEDSSDEDDKR 15 1 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 ENPPVEDS(0.95)S(0.05)DEDDKR 154.6 1.5e-06 559360000.0 143270.0 111160.0 115760.0 77006.0 129590.0 156530.0 112670.0 128270.0 147010.0 117360.0 True False 142498.6502387935 114859.89340236102 132058.0017960427 86754.95170439704 146092.51835989216 145709.449531986 107219.7216588024 137842.1587418624 110781.35533307528 109869.98432304898 1.2969752486703463 1.0454164903185958 1.2019479442879926 0.7896146726417365 1.329685439203656 1.3261988743309439 0.9758781920232732 1.2545934141263484 1.008294995358756 1.0 16.745437780807276 1.1408949978898812 9.902092986889647 1.0012729011920365 1.1467972844178838 0.11473246777940582 0.16429762539609705 0.7754417279343152 71.85128449067965 0.14982380016954006 0.03748270246695059 13.83231905856337 -1.1408949978898812 0.14552438322584726 ENPPVEDS(ph)SDEDDKRNQGNLYDK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENPPVEDSSDEDDKRNQGNLYDK 23 2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 ENPPVEDS(0.5)S(0.5)DEDDKRNQGNLYDK 88.531 0.0031956 117680000.0 80206.0 65162.0 80990.0 45288.0 67209.0 113360.0 82510.0 69710.0 146510.0 89142.0 True False 79774.1798077243 67330.87777873922 92392.68802230024 51021.45615651677 75767.66777104708 105523.69002073682 78518.67608119105 74912.11418020753 110404.57363341861 83452.88124169411 0.955918820545984 0.806813099523038 1.10712400395997 0.611380402897651 0.9079095490017978 1.2644703028901039 0.9408743582356044 0.8976576130816739 1.3229570026907482 1.0 16.34867423957886 2.977247108975686 24.607202350210116 1.055285679029311 0.8673085032978436 0.26356981652012035 0.1705641689539513 964.4805191214667 1043084.6635590362 0.05127931973088289 0.05478093121140125 948.9582569486627 -2.977247108975686 -0.18797717573146744 ENPSATLEDLEKPGVDEEPQHVLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENPSATLEDLEKPGVDEEPQHVLLR 25 1 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 ; 193.09 2.4306999999999997e-18 919000000.0 228430.0 223565.0 243469.0 198219.0 176860.0 209548.0 184943.0 270540.0 383658.0 240015.0 False True 227200.15826095914 231006.22587710375 277747.31892951514 223313.5050761478 199382.07266865167 195062.43998293357 175996.60053913112 290729.06857428415 289110.6266538126 224697.03721282032 1.0111399824367422 1.0280786464411977 1.2360969346758612 0.9938426774387679 0.887337346063038 0.8681130930897921 0.7832617764890113 1.293871393145794 1.2866686193996557 1.0 17.777621576139538 -0.8254621595008477 5.261997328088721 0.9999999709340727 1.0441186459130392 0.005807380594178291 0.16897922106490934 6.266466910888221e-08 1.339752725340708e-08 0.17522299998281404 0.04130043009054787 0.14946442664967366 0.8254621595008477 0.04411867497896649 ENPYYDSR ddPTM_BT-474_Trastuzumab_2h_R1 8 ENPYYDSR 8 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;;; 177.36 0.00059389 19165650000.0 12418710.0 15105780.0 13724010.0 13442560.0 13181720.0 14317620.0 14863860.0 12526790.0 16317980.0 13823720.0 False True 12351849.045208402 15608566.755663173 15656231.316766648 15144386.717703268 14860333.907824364 13327876.629452204 14144838.306340722 13461602.679550743 12296632.478729445 12941478.354517892 0.9544387980138568 1.206088387128832 1.2097714718427846 1.170220766348254 1.1482717430529563 1.0298573520234202 1.0929847362764962 1.0401904875768133 0.9501721628608737 1.0 23.62549909552242 2.0239552564220484 0.9354241365238587 0.9834517909224678 1.144927879736485 0.38053339364827776 0.07417945822230677 0.578447466919279 0.9343135362530258 0.06019075650342649 0.029388667868124527 105.67086352518025 -2.0239552564220484 0.1614760888140172 ENQHPNLLGGAGEPPKPDK ddPTM_BT-474_Trastuzumab_2h_R1 4 ENQHPNLLGGAGEPPKPDK 19 1 Q8IV56 Q8IV56 PRR15 Proline-rich protein 15 0 ;;; 128.01 1.3398e-05 1021000000.0 2007710.0 1517720.0 1406910.0 1364440.0 1407200.0 1816590.0 1779620.0 1851990.0 2661630.0 1711030.0 False True 1996900.7124375522 1568236.392718886 1604990.698919057 1537177.9641008147 1586398.5788721363 1691013.4090928906 1693532.98179141 1990194.8980146672 2005706.9505147517 1601830.6005135158 1.246636636731365 0.9790276151648869 1.0019728043680325 0.9596382811066446 0.9903660089672203 1.0556755555492476 1.0572484888530012 1.2424502924195913 1.2521342455761308 1.0 20.6112901548228 1.8643958438325268 5.47211801440065 1.187166969514187 1.030952009652805 0.23245422085063372 0.09992121688529372 0.2561968353279834 10.024263222526157 0.04371400368181149 0.025900191406718818 73.18057943112555 -1.8643958438325268 -0.156214959861382 ENQIYSADEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENQIYSADEKR 11 1 Q8N5F7;A0A494C050;Q5M9Q1 Q8N5F7 NKAP;NKAPL NF-kappa-B-activating protein;NKAP-like protein 0 81.48 0.034567 187870000.0 46336.0 86894.0 76445.0 100710.0 97526.0 79678.0 84922.0 56298.0 78362.0 78942.0 False True 46086.53212441358 89786.21426146768 87207.79152814853 113459.87567397108 109945.35801810969 74170.04740183718 80813.99842645615 60499.24263545146 59050.73509700327 73903.85397435358 0.6236012013718082 1.2149057110421557 1.1800168304945469 1.5352362505119745 1.4876809815123224 1.0036018883071507 1.0935018145941422 0.8186209430491427 0.7990210512904415 1.0 16.173361980249826 2.10054057421502 1.9434194313119402 0.8622240549493326 1.216585853855715 0.22953535704806083 0.24348053310710294 0.4678722956094647 3.4045023338800022 0.13816771532453545 0.07810084042560601 126.04933947234368 -2.10054057421502 0.3543617989063824 ENQPENSQT(ph)PTKK ddPTM_BT-474_Trastuzumab_2h_R1 4 ENQPENSQTPTKK 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 ENQPENSQT(1)PTKK;ENQPENSQT(0.996)PT(0.004)KK;ENQPENS(0.003)QT(0.996)PTKK;ENQPENS(0.003)QT(0.993)PT(0.004)KK 195.92 8.5546e-08 2543270000.0 1462410.0 826360.0 723570.0 617891.0 623175.0 1434220.0 1493750.0 1144170.0 2349300.0 1685110.0 True False 1454536.5470490267 853864.8930548311 825442.3666168157 696115.9372462089 702532.6424023915 1335075.74719073 1421491.6058208586 1229553.7753775355 1770346.4940071683 1577564.8371047464 0.9220137979992572 0.5412550235474959 0.5232383146493829 0.4412597953969156 0.44532727015627893 0.8462889865376001 0.9010669941336142 0.779399836037228 1.1222020498734162 1.0 20.589267869775885 2.613856004935378 5.058900038938897 0.9099578691436976 0.56355958794158 0.5778650527992226 0.15191107857735675 0.17917859742773742 6.6569226469681295 0.050911074094253814 0.04774502326528828 411.0134225342587 -2.613856004935378 -0.3463982812021176 ENQQHYGDLLNHCAVLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENQQHYGDLLNHCAVLEK 18 0 Q14789;Q14789-2;Q14789-4;Q14789-3;H7C5I7 Q14789 GOLGB1 Golgin subfamily B member 1 0 ; 150.7 3.0657e-08 439800000.0 350710.0 365160.0 322880.0 284470.0 320050.0 389180.0 397910.0 273350.0 448430.0 371270.0 False True 348821.81632754416 377314.12985611835 368338.6974767301 320483.8728326336 360806.470415028 362276.9026311784 378661.57313618646 293748.7650431746 337920.43515414593 347575.230739761 1.003586520204935 1.0855610425779265 1.059738050645258 0.9220561319934462 1.0380672686229864 1.0422978123617355 1.0894377379258668 0.8451372222870285 0.9722224291844205 1.0 18.406965749448283 1.7469642173626703 24.99999999999999 0.9264481293236845 1.0334600877668958 0.3528979415021021 0.05835904182338294 1.8574502215143667 5539.481892007482 0.026528248566916744 0.014711278920532114 55.84241828392692 -1.7469642173626703 0.10701195844321132 ENQRS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 10 ENQRSPVR 8 1 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR;ENQRS(1)PVR 97.911 0.0047818 2739121000.0 1532670.0 1714620.0 1719286.0 1657903.0 1383541.0 1277534.0 1710793.0 1453801.0 2122363.0 1676251.0 True False 1524418.2750156461 1771690.0901903235 1961346.5244981933 1867793.3498113751 1559726.7454600174 1189221.0815715587 1628035.4067260826 1562291.012871895 1599335.0768571657 1569271.2260693177 0.9714179739559627 1.128989087901663 1.2498454645159962 1.190229782323729 0.9939178897498764 0.7578174262140129 1.0374467967554317 0.9955519396000737 1.0191578423719343 1.0 20.581663292368372 3.1534233439312835 6.058141942985198 0.9623049851516624 1.142336064591162 0.4120865869776761 0.098397223450856 0.20687512312477718 11.684136794295744 0.02987067489947201 0.03602259279739435 1423.7159284673533 -3.1534233439312835 0.1800310794394996 ENREDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENREDYR 7 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 117.4 0.004778800000000001 294430000.0 284460.0 467150.0 429030.0 534650.0 460580.0 390070.0 540100.0 399860.0 705030.0 514080.0 False True 282928.4989664773 482698.8053518622 489433.6948043901 602336.6351811009 519232.1329284601 363105.3790260126 513973.29961763707 429699.58364793804 531284.8034179859 481270.97427396843 0.5878777530543892 1.0029667924188608 1.016960758006933 1.2515540462205696 1.0788768919874272 0.7544718016160915 1.0679499223758557 0.8928433390278117 1.1039203106305484 1.0 18.876489890605296 4.738646744919915 6.0727158025996975 1.0137450480978303 0.5768560622302953 0.5204593862946102 0.12405816082600792 0.10746676369030717 19.853115163908733 0.030320812954833885 0.1939199209120555 54783.117782876 -4.738646744919915 -0.436888985867535 ENS(ph)FGSPLEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ENS(0.987)FGS(0.013)PLEFR;ENS(0.994)FGS(0.006)PLEFR;ENS(0.999)FGS(0.001)PLEFR 129.74 0.00025033 231097000.0 581930.0 450270.0 399253.0 412886.0 412884.0 520760.0 433111.0 439750.0 622950.0 473910.0 True False 578796.953538501 465256.9647560371 455464.35203071334 465157.32526584464 465462.33004480094 484761.08693718095 412159.76628530736 472566.37800525443 469432.3196023345 443664.6580652357 1.3045820599336442 1.04866807914104 1.0265959745744333 1.0484434962530838 1.049130963179763 1.092629485186315 0.9289894040302487 1.0651431648084284 1.0580791394326252 1.0 18.759110108359472 4.73863987707366 4.9647161958116355 1.0352087969835317 1.3181594110189934 0.7872767627721226 0.04205079659070389 0.07071752602832948 5.389484927623635 0.00964243270529179 0.06894039964101768 54782.251460435575 -4.73863987707366 0.2829506140354616 ENS(ph)PAAFPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENSPAAFPDR 10 0 A0A0A0MR03;Q9Y5B0;K7EJD2;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 A0A0A0MR03 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 ENS(1)PAAFPDR;ENS(1)PAAFPDR 176.58 2.5723000000000003e-06 632510000.0 610690.0 530240.0 460530.0 459640.0 447570.0 587050.0 571710.0 522070.0 737720.0 532950.0 True False 607402.1128940377 547888.7178631518 525368.6210014808 517830.3768720496 504565.3865447723 546468.6152670569 544054.2031557116 561029.5144177444 555918.7909415434 498936.67471854883 1.217393195713012 1.0981127377982725 1.0529765551867727 1.0378679361747836 1.0112814152806038 1.0952664796095033 1.0904273642794724 1.1244503417878076 1.1142071110630187 1.0 18.928497194073625 6.733551277881863 0.007299125830413768 2.1873378462551773e-07 2.2490696417975498 0.17992306118170465 0.05444348048584546 50187.2310500895 35.21426141350357 4971.122798658676 5915.857642141249 5414411.729811084 -6.733551277881863 2.2490694230637653 ENS(ph)REALAEAALESPRPALVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENSREALAEAALESPRPALVR 21 2 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 ENS(1)REALAEAALESPRPALVR;ENS(0.995)REALAEAALES(0.005)PRPALVR 156.02 1.4935e-08 1442350000.0 325860.0 327580.0 261350.0 302650.0 272170.0 355660.0 384500.0 312490.0 577160.0 380850.0 True False 324105.6059664494 338483.3022737081 298145.808305077 340965.4589685962 306829.23622202204 331074.0613335857 365900.2660673609 335809.59059206746 434926.65154777083 356543.8269379103 0.9090203825710611 0.9493455690445952 0.8362108267744518 0.9563072845683374 0.8605652742810053 0.9285648392146754 1.0262420449396252 0.9418465984282668 1.21984064422888 1.0 18.443719900389908 1.7547714117225932 1.317726851323139 1.0847563922453114 0.9060450094060497 0.4771423370404556 0.07327210773081266 0.3540868738091064 1.16184676055448 0.055642459227759525 0.021833876498882843 56.855359732267516 -1.7547714117225932 -0.1787113828392617 ENSFGS(ph)PLEFR ddPTM_BT-474_Trastuzumab_2h_R1 6 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ENS(0.001)FGS(0.999)PLEFR;ENS(0.004)FGS(0.996)PLEFR;ENSFGS(1)PLEFR;ENSFGS(1)PLEFR;ENS(0.001)FGS(0.999)PLEFR;ENSFGS(1)PLEFR 214.32 1.4308e-11 17973000000.0 11640200.0 12615110.0 11191940.0 10464000.0 10916350.0 11296780.0 11530110.0 10663160.0 11622540.0 11387140.0 True False 11577530.45654779 13034996.310354969 12767667.86991362 11788741.327101897 12306482.466224326 10515860.18835974 10972354.530002434 11458899.145629358 8758320.751056952 10660402.976178957 1.0860312206225398 1.222748927923468 1.1976721610283796 1.105843874142868 1.154410625350992 0.9864411516016605 1.0292626418082453 1.0749030004995748 0.82157501650057 1.0 23.345758638964025 2.5849173451552945 0.7811790563437557 0.9625826025545786 1.1764033684126463 0.5717578841201434 0.07273449311067183 0.49604689023308735 0.6283109968232191 0.05181330953774678 0.0426170962282409 384.5185935740337 -2.5849173451552945 0.21382076585806764 ENSFGSPLEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 94.363 0.019914 286990000.0 134192.0 162664.0 146605.0 155916.0 137203.0 138816.0 136122.0 128343.0 190391.0 154994.0 False True 133469.52518213296 168078.1729075355 167245.70968649647 175654.9496135725 154674.98878410598 129219.97665771532 129537.25882346243 137920.60637254865 143471.68915869354 145102.1502229606 0.9198314771838101 1.1583437781540142 1.1526066941772442 1.2105606246610763 1.0659730992713476 0.8905448779301954 0.8927314903632957 0.9505069784329387 0.9887633569746435 1.0 17.146709372842277 2.8974373284935764 4.880104435010155 0.9388946635139279 1.1191456982012051 0.5020990157149062 0.07865565794172567 0.17443753172067306 6.549146754270677 0.02433984970366897 0.026099744718026542 789.6548888628411 -2.8974373284935764 0.1802510346872772 ENSRPMGDQIQEPESEHGS(ph)EPDFLHNPQMQISWLGQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENSRPMGDQIQEPESEHGSEPDFLHNPQMQISWLGQPK 38 1 Q8WVM7;Q68DW7 Q8WVM7 STAG1;DKFZp781D1416 Cohesin subunit SA-1 1 ENSRPMGDQIQEPES(0.033)EHGS(0.967)EPDFLHNPQMQISWLGQPK 180.69 2.0382e-23 116260000.0 10108.0 9920.7 13934.0 11062.0 11388.0 17171.0 16440.0 13618.0 18657.0 15171.0 True False 10053.57965110438 10250.904502310212 15895.786083500836 12462.448065787596 12838.194298035756 15984.00918618624 15644.7343931012 14634.24431080284 14059.232340991675 14202.773791453432 0.7078602953709054 0.7217536977515426 1.1192029329556865 0.8774657858232535 0.9039216202796375 1.1254146141371817 1.101526689280616 1.0303793136245716 0.9898934213436439 1.0 13.793885094094962 4.25131209600469 24.96999713336173 1.0192817763330608 0.7148067410032813 0.7011413054169515 0.0793016625237651 122.75030261953724 240365.56437035254 0.0202547497936983 0.05468608710798743 17836.60094381571 -4.25131209600469 -0.3044750353297795 ENSS(ph)PSVTSANLDHTKPCWYWDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENSSPSVTSANLDHTKPCWYWDKK 24 2 O75909;G3V5E1;O75909-1;O75909-4;G3V2Q3;O75909-2;G3V235 O75909 CCNK Cyclin-K 1 ENS(0.37)S(0.63)PSVTSANLDHTKPCWYWDKK 194.73 8.138899999999998e-19 2755300000.0 1246800.0 1111600.0 1003300.0 858820.0 1059300.0 1384400.0 1348300.0 1276800.0 1866000.0 1287900.0 True False 1240087.367332503 1148598.9340236099 1144555.9191600692 967546.5239432008 1194195.5760369932 1288699.6865270648 1283077.5779938162 1372081.299459031 1406149.3031189607 1205705.1193733374 1.028516299223342 0.9526366899898308 0.949283453117417 0.8024735968991167 0.9904540976467561 1.0688348799554435 1.0641719582817173 1.1379907718830682 1.1662464399668502 1.0 20.20144567819023 2.760801895669068 2.788881226800838 1.1016418584557284 0.9329644658892934 0.5369138143842354 0.06726073866632806 0.20174510254274414 3.1390938085838727 0.02307911163834466 0.023364457989895827 576.5034301668634 -2.760801895669068 -0.168677392566435 ENSSPS(ph)VTSANLDHTKPCWYWDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENSSPSVTSANLDHTKPCWYWDKK 24 2 O75909;G3V5E1;O75909-1;O75909-4;G3V2Q3;O75909-2;G3V235 O75909 CCNK Cyclin-K 1 ENS(0.014)S(0.105)PS(0.8)VT(0.014)S(0.067)ANLDHTKPCWYWDKK 190.48 6.1254e-18 1487500000.0 793570.0 646530.0 672530.0 530840.0 632650.0 790130.0 809060.0 807240.0 1134500.0 799880.0 True False 789297.5072939147 668049.360214361 767216.3782644478 598044.2895717486 713214.2274896654 735510.1728659561 769922.6768906614 867480.3478816617 854917.6765211475 748830.9735882786 1.0540396099158758 0.892123034138365 1.0245521423720887 0.7986372234391103 0.9524368684591885 0.9822112049418957 1.028166173737866 1.1584461360149596 1.1416697581625375 1.0 19.51428058419526 2.122093325348429 2.34247159506437 1.1148991405305888 0.9411202173458076 0.42424546327103974 0.07743726407444154 0.24202671816425744 2.618989244208544 0.036239456866940835 0.022295537698949035 132.4626152938871 -2.122093325348429 -0.17377892318478116 ENTEGEYSGIEHVIVDGVVQSIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENTEGEYSGIEHVIVDGVVQSIK 23 0 H0YL72;P50213;P50213-2;H0YLI6;H0YMU3 H0YL72 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 0 ; 197.33 2.9847000000000003e-24 102812000.0 139715.0 143570.0 144628.0 116042.0 161134.0 279480.0 151883.0 126234.0 206380.0 183431.0 False True 138962.78996379577 148348.6406601022 164990.3652708884 130732.90530194558 181653.45978395618 260160.20542515445 144535.83904059557 135654.2220832637 155520.41435031692 171724.27653682 0.8092204128983492 0.8638769290624686 0.9607864921504692 0.7612954204172447 1.0578204983440838 1.5149879252475558 0.8416738853437833 0.7899536676992646 0.9056402361198549 1.0 17.38973448094943 3.228111720551698 24.944853233158668 1.0037550730816858 0.8578715044644509 0.15469540656084768 0.19189204036425622 507.5342787995651 1211644.6347049526 0.06206776929916956 0.07493732518407159 1690.8758468789167 -3.228111720551698 -0.14588356861723484 ENTHQTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ENTHQTLK 8 0 C9JRZ6;Q9NX63 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 0 67.563 0.07530099999999999 0.0 38187.0 49359.0 40694.0 45335.0 49271.0 55106.0 47370.0 43278.0 60053.0 54504.0 False True 37981.40543497453 51001.8844768544 46423.36148141119 51074.40635169771 55545.369797903004 51296.65192557096 45078.53212902699 46507.6241212311 45253.74281897268 51025.50805677796 0.7443611417393673 0.9995370241116017 0.9098069426325792 1.0009583107896807 1.0885804358105682 1.005313888663123 0.8834509218186805 0.9114583253042842 0.8868847081075053 1.0 15.638931021674567 4.745001333247817 24.414620287639416 0.960778043640589 0.7443610053511562 0.5255382450710913 0.06280300042882019 477.8888829061263 1811449.674691319 0.016486658699832075 0.1547535934435778 55590.59638527022 -4.745001333247817 -0.21641703828943282 ENVDYIIQELR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENVDYIIQELR 11 0 A0A2R8YE10;Q9NRW7;B7Z7G7;A0A2R8YF01;A0A1B0GXI6;A0A2R8YD95;Q9NRW7-2 A0A2R8YE10 VPS45 Vacuolar protein sorting-associated protein 45 0 ; 96.82 0.015650999999999998 99011000.0 97788.0 135150.0 126573.0 140940.0 129402.0 126879.0 122530.0 108017.0 129567.0 135142.0 False True 97261.52027326824 139648.3860500999 144393.3782077616 158782.98954909638 145880.57767425562 118108.15337103968 116602.75578994457 116077.77703921204 97636.94895885013 126517.12185911296 0.768761720501173 1.1037904119065376 1.141295155042772 1.2550316290463364 1.1530500815273481 0.9335349368962301 0.9216361712669306 0.9174867032501264 0.7717291345560071 1.0 16.948973115875713 2.636102123715933 5.096211992994982 0.9027220619072315 1.0976245825751996 0.31634206327698877 0.12863466228944853 0.27005089829569545 10.793201711994982 0.043407149553906156 0.04082183699131293 432.615547992308 -2.636102123715933 0.1949025206679681 ENVEYIEREES(ph)DGEYDEFGR ddPTM_BT-474_Trastuzumab_2h_R1 9 ENVEYIEREESDGEYDEFGR 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR 301.09 4.4163999999999984e-55 35719788000.0 3678925.0 4386926.0 3915065.0 4402967.0 4578538.0 4702655.0 4824065.0 4263666.0 5513779.0 4799070.0 True False 3659118.0765669914 4532942.1799572315 4466272.121644987 4960382.170753627 5161587.67517914 4377571.528709143 4590706.546232097 4581842.40737726 4154982.046303307 4492789.243909461 0.8144424049107989 1.008937195552229 0.9940978486136598 1.104076310162567 1.148860406077654 0.9743549699428902 1.0217943235275002 1.0198213534250513 0.9248112521494094 1.0 22.09917995615811 4.814185073162342 2.5325426880140856 1.0289211343825895 0.7407493583890385 0.516431958831248 0.060103627910324676 0.5863437629397645 3.9538147206293286 0.015436354183844975 0.39158486221871197 65190.614253026935 -4.814185073162342 -0.2881717759935509 ENVEYIEREES(ph)DGEYDEFGRK ddPTM_BT-474_Trastuzumab_2h_R1 4 ENVEYIEREESDGEYDEFGRK 21 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK 238.2 3.6374e-30 3436010000.0 5274980.0 4844210.0 4541810.0 4208070.0 4698660.0 6363390.0 5953680.0 5655840.0 8121110.0 6358160.0 True False 5246580.093785376 5005446.601463223 5181257.369879792 4740811.230536867 5297006.499860261 5923503.827108831 5665677.753133746 6077907.500573591 6119771.257798725 5952376.7853053585 0.8814260728147479 0.8409156177445246 0.8704518475158982 0.7964568443047011 0.8898977149660601 0.9951493396271879 0.9518345288760304 1.0210891749289344 1.0281222910664214 1.0 22.505034421221506 2.8204723121727726 3.182253362178625 0.9997107341469128 0.8477739765044109 0.8663703330557635 0.02849656648317823 0.08692029903858217 1.7109840233516622 0.00926136366440573 0.009737286528416779 661.412368734677 -2.8204723121727726 -0.15193675764250192 ENVFQEHQTLK ddPTM_BT-474_Trastuzumab_2h_R1 5 ENVFQEHQTLK 11 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;;; 156.81 3.0886e-05 7662890000.0 6914670.0 7527020.0 6925220.0 6850270.0 6788540.0 8856460.0 8419660.0 7650610.0 9284230.0 8605780.0 False True 6877442.185012055 7777552.310520333 7900230.780908696 7717513.479626 7653020.330171015 8244233.766064347 8012368.879575332 8221537.3672104 6996255.918808234 8056551.752621062 0.8536458768200175 0.9653698690621628 0.9805970374780365 0.9579176943926709 0.94991263820545 1.0232955759742033 0.9945159077478332 1.0204784403619902 0.8683933441539826 1.0 22.941731058963832 4.743149983599959 3.5557318052444837 0.9785135052753983 0.8383355929417836 0.41820297031635434 0.042260760213916074 0.2705111637720099 6.057223710403026 0.009981510129172859 0.1021023706467554 55354.124167865986 -4.743149983599959 -0.14017791233361465 ENVKDYYQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ENVKDYYQK 9 1 A0A0A0MRR7;P09234 A0A0A0MRR7 SNRPC U1 small nuclear ribonucleoprotein C 0 ; 140.07 0.00010029 824710000.0 1205870.0 1260550.0 1177390.0 1165940.0 1388380.0 1857820.0 1828390.0 1803760.0 2584520.0 2059180.0 False True 1199377.7299047515 1302506.6447314338 1343156.2779426621 1313547.8844534794 1565181.963427017 1729393.2762378706 1739943.7905719182 1938365.7305076884 1947599.6767936866 1927761.3694473067 0.622160890301799 0.6756576126976054 0.6967440572417674 0.68138510568353 0.811916862861381 0.8970992487175378 0.9025721845804825 1.0055008681201147 1.0102908522085736 1.0 20.878495045984305 2.785366222076357 0.7856766021887799 1.0150698302073287 0.6404145341183768 0.9701103244409247 0.02500359633522461 0.09691828216843705 0.12995048060516146 0.016401371689901353 0.016618744657731083 610.0511105731337 -2.785366222076357 -0.3746552960889519 ENVKPSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENVKPSGR 8 1 Q8NI27;A0A0C4DG98 Q8NI27 THOC2 THO complex subunit 2 0 64.654 0.060466999999999986 158990000.0 92984.0 92318.0 90349.0 80836.0 92754.0 89680.0 89376.0 85576.0 109780.0 103430.0 False True 92483.38447549351 95390.74882259042 103069.35387241404 91069.82931169808 104565.67210396982 83480.63268401269 85052.54143052394 91962.11566612315 82726.18997663441 96829.00884912188 0.9551206355896953 0.9851463931767335 1.064447060828804 0.9405221678309472 1.0799002628117689 0.8621448641913859 0.8783787259771715 0.9497372405145417 0.8543533695107594 1.0 16.56315170652368 2.72681999709716 24.95354597946589 0.9069863221948734 1.0036402901256698 0.41677821577868135 0.05680818295218394 695.0875166573657 1477338.7887855284 0.017246579027249676 0.016374474869498112 533.1138889100879 -2.72681999709716 0.09665396793079639 ENWLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ENWLPR 6 0 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UJW8 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 100.74 0.086812 116110000.0 207630.0 233780.0 222310.0 207430.0 211820.0 258940.0 249060.0 209740.0 296150.0 254550.0 False True 206512.14314986154 241561.2259770056 253609.31564684 233690.61673172284 238794.02144449696 241040.0872791955 237012.01629840527 225391.86383813963 223167.80070668866 238304.40106878072 0.8665897156060365 1.013666658666891 1.0642242212456743 0.9806391140223792 1.0020546006432123 1.0114797972599137 0.9945767482070026 0.9458149443622142 0.9364820779884664 1.0 17.862446070285067 -0.20734994976193521 6.078251907546205 0.9999999914372144 0.9826402924538823 0.011043429199964705 0.05091965476460772 3295908.818385981 542246.0681014106 0.049021020408329806 0.011889343833578349 0.6203689462363563 0.20734994976193521 -0.017359698983332117 ENYIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENYIHR 6 0 P60842;Q14240;Q14240-2;E7EQG2 P60842;Q14240 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ; 110.61 0.06643099999999999 578740000.0 579800.0 721830.0 671340.0 669440.0 624750.0 622300.0 660010.0 606760.0 828470.0 643220.0 False True 576678.4212218355 745855.6751945507 765858.8366081137 754191.0353607713 704308.209316634 579281.8657366309 628082.7948169538 652039.5122648507 624304.6694292419 602169.1489116523 0.9576684927550869 1.238614891750257 1.2718334009510628 1.2524571156192246 1.1696185541713415 0.9619919366238084 1.0430338318595984 1.0828178651186848 1.0367596389778468 1.0 19.199809270423167 2.859157837820141 6.206551393367493 1.0363055429280372 1.192995725810025 0.42847202772603343 0.08739933822602124 0.23420909048651775 11.00167092742198 0.02714424096385928 0.02887234145957206 723.0325311935583 -2.859157837820141 0.15669018288198777 ENYSHHTQDDR ddPTM_BT-474_Trastuzumab_2h_R1 7 ENYSHHTQDDR 11 0 Q92804-2;Q92804;A0A075B7D9;A0A075B7E4;A0A075B7F2 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ;;;;;; 207.47 1.3231e-08 2034647000.0 899182.0 1291889.0 1323102.0 1292596.0 1340391.0 1407335.0 1372618.0 879433.0 1307877.0 1227015.0 False True 894340.9040205127 1334888.7444016074 1509383.2609912553 1456238.521067146 1511081.8487301064 1310049.2439602483 1306219.2234300345 945060.7561302879 985568.2380039226 1148705.852199607 0.778563896325572 1.1620805638323222 1.3139858721020727 1.2677209907816331 1.3154645689639355 1.140456663863679 1.1371224590949998 0.8227178039709923 0.8579813849791926 1.0 20.1315779853224 1.8150842867934889 5.043861101971003 0.8802313747836477 1.1776807041384145 0.39350314271182385 0.1501723394155204 0.204929781786118 8.567944989980107 0.07319845588232977 0.041421575374530985 65.32573229028239 -1.8150842867934889 0.29744932935476687 ENYSHHTQDDRR ddPTM_BT-474_Trastuzumab_2h_R1 7 ENYSHHTQDDRR 12 1 Q92804-2;Q92804;A0A075B7D9;A0A075B7E4;A0A075B7F2 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ;;;;;; 164.68 3.6765e-05 1724690500.0 256906.5 805518.3 589536.1 821390.6 588081.6 278284.8 308338.5 128314.8 152480.8 280731.8 False True 255523.3439489954 832329.4896694043 672537.658540358 925378.565740924 662970.3059272689 259047.62678795608 293422.9887875449 137890.301945352 114903.94997803948 262815.25617741427 0.9722546082960404 3.1669755469124583 2.5589749557246377 3.521023015179318 2.5225716176831408 0.9856643429142681 1.1164610192547908 0.52466627680194 0.4372042614621779 1.0 18.003689499612488 2.715118985734599 3.8324413695727526 0.7586477617946901 2.652551447109361 0.6420168755187176 0.647878081481653 0.13587679197404984 4.46568317762191 0.20972989247929938 0.20570548580546663 518.9421965277602 -2.715118985734599 1.893903685314671 ENYTWSQDYTDLEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 ENYTWSQDYTDLEVR 15 0 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 0 ;; 232.37 1.6029000000000004e-13 371056000.0 293739.0 295999.0 275406.0 246691.0 254777.0 312216.0 308020.0 300659.0 347183.0 293920.0 False True 292157.5418614711 305851.1477798258 314180.7709281346 277922.0553062016 287221.34076841007 290633.24279741 293119.8958493325 323095.7012954668 261624.40166385376 275161.7739624279 1.0617664570710459 1.1115321120934056 1.1418038428951056 1.0100314854931507 1.0438271880295003 1.0562268101858314 1.0652638686991336 1.1742027122545882 0.9508021332191926 1.0 18.069920536245235 1.2149627900142974 24.999862565731895 0.9754009497077116 1.0848932912116016 0.45525628083172287 0.04708237487677184 249.69106573659738 264519.27035418793 0.04766755660987857 0.01194440525404437 16.40449214870055 -1.2149627900142974 0.10949234150388998 ENYVWNVLLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ENYVWNVLLHR 11 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 0 ; 149.38 3.4385e-05 300390000.0 331580.0 447540.0 401660.0 404340.0 349400.0 386460.0 402840.0 334180.0 489220.0 393280.0 False True 329794.8101220011 462436.09835635737 458210.23670869385 455529.4025420861 393894.01894394925 359744.9298289865 383353.09020175727 359118.2085316559 368658.2862121426 368180.5336960521 0.8957421154543169 1.2560036613400019 1.2445259723779012 1.237244668992044 1.0698393393854024 0.977088403391719 1.041209556500428 0.9753861914604167 1.0012976039534043 1.0 18.490053825506546 3.027699481138161 5.015773783025158 1.0007995805659162 1.1710181559283686 0.3674984616430633 0.09786590006942106 0.18796895833385138 12.327645577866294 0.028680787754819255 0.03370068696871746 1065.8583237404684 -3.027699481138161 0.17021857536245233 EPAAAISRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EPAAAISRPR 10 1 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ;;; 179.57 1.9076e-06 1077960000.0 587820.0 738060.0 709940.0 688000.0 665450.0 694670.0 729640.0 600840.0 766410.0 696240.0 False True 584655.242432942 762625.880933308 809893.3810908983 775100.7294577707 750191.1130688338 646649.0979772861 694344.5257045227 645677.7318036997 577538.5248678476 651805.3671189465 0.8969782575083485 1.1700208672785264 1.2425386809420098 1.1891597838228973 1.1509434424953624 0.9920892502551003 1.0652635905310264 0.9905989799649371 0.8860597871733293 1.0 19.314081706053038 2.7365813731409214 24.21551128477776 0.9931348619002262 1.141702361467814 0.3588092096430381 0.09482598442610385 128.12205040409899 1567530.2700597509 0.030634485662255528 0.030271614008977606 545.2320454735973 -2.7365813731409214 0.14856749956758775 EPAEQPGDGER ddPTM_BT-474_Trastuzumab_2h_R1 1 EPAEQPGDGER 11 0 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 87.568 0.031702999999999995 91104000.0 57919.0 76998.0 56313.0 69477.0 74222.0 68901.0 63662.0 60287.0 74324.0 52437.0 False True 57607.17053940584 79560.83188372609 64241.38091862948 78272.78107636263 83673.73175173951 64138.03604550792 60582.42584754314 64785.922071183006 56007.84609057543 49090.42576642566 1.1734909534804854 1.6206995690418315 1.3086336065670465 1.5944612387105352 1.704481687526254 1.306528412498996 1.2340986027661873 1.319726220738789 1.1409118013574207 1.0 15.583154058953495 1.4754332904677532 0.8205757759599732 1.0163249378509938 1.4726569832174026 0.47011946790839765 0.1583275474834872 0.48452232569002995 0.6781698002532421 0.14460313915488313 0.05842888592030564 29.883625861375435 -1.4754332904677532 0.4563320453664088 EPAESAAVAHERPPGGTGSADPERPPGATCPES(ph)PGPGPPHPLGVVESGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EPAESAAVAHERPPGGTGSADPERPPGATCPESPGPGPPHPLGVVESGK 49 2 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 EPAESAAVAHERPPGGTGSADPERPPGAT(0.04)CPES(0.96)PGPGPPHPLGVVESGK;EPAESAAVAHERPPGGTGSADPERPPGATCPES(1)PGPGPPHPLGVVESGK;EPAESAAVAHERPPGGTGSADPERPPGAT(0.003)CPES(0.997)PGPGPPHPLGVVESGK;EPAESAAVAHERPPGGTGSADPERPPGAT(0.008)CPES(0.992)PGPGPPHPLGVVESGK 220.14 2.4922e-50 6226600000.0 1891172.0 1740277.0 1696511.0 1634199.0 1506680.0 2050600.0 1981079.0 1750557.0 2394947.0 1964748.0 True False 1880990.140080964 1798201.0679253375 1935365.0024620425 1841088.4258418037 1698546.7672079827 1908846.8485931798 1885246.6403132933 1881192.4524883318 1804744.4024956306 1839356.1005346107 1.0226351164596417 0.9776253045305847 1.0521970171515602 1.0009418107275092 0.9234463988317968 1.0377799318132968 1.0249492416206651 1.0227451073457507 0.9811827095205109 1.0 20.810769382810566 EPAFEDITLESER ddPTM_BT-474_Trastuzumab_2h_R1 2 EPAFEDITLESER 13 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ; 164.48 8.597e-05 362000000.0 170982.0 317150.0 320120.0 372220.0 317860.0 234320.0 295790.0 199511.0 163343.0 242660.0 False True 170061.45190988627 327706.1460287769 365190.11346707935 419343.0138354231 358337.58689617494 218122.00992994936 281481.50767246954 214399.5239163304 123089.30633406257 227173.2310483216 0.7485981122208576 1.4425385619446998 1.6075402536727597 1.8459173728361744 1.5773759313215632 0.9601571845564543 1.2390610741130679 0.9437710725289014 0.541830152109253 1.0 17.793433319362563 2.1189302663811898 1.2558381551047508 0.8102209997098743 1.4525886632039782 0.3883540210906693 0.3113929579337279 0.4791325978458236 1.425079159169601 0.2218523630203919 0.11394093431437122 131.50136666627324 -2.1189302663811898 0.6423676634941039 EPAHLMSLFGGKPMIIYK ddPTM_BT-474_Trastuzumab_2h_R1 2 EPAHLMSLFGGKPMIIYK 18 1 P06396-2;A0A0A0MS51;A0A0A0MT01;P06396-4;P06396-3;P06396 P06396-2 GSN Gelsolin 0 ; 272.71 3.2825000000000005e-39 3401800000.0 4557100.0 5062900.0 5009500.0 4507400.0 4438400.0 5911700.0 6030300.0 4902900.0 7121500.0 5903500.0 False True 4532565.079941411 5231415.565912322 5714794.05664543 5078036.37784586 5003603.93154214 5503038.093644938 5738591.351016916 5268779.294421733 5366501.748210982 5526733.5757593615 0.8201164427070552 0.9465655425942143 1.0340274193261123 0.9188133113777153 0.905345601150071 0.9957125702207986 1.0383332708829638 0.9533260871359832 0.9710078610897462 1.0 22.397995636337054 2.7249825873525437 23.81162436164937 0.9897752555348863 0.931889512711438 0.278177930613575 0.0530987381604956 677.9562699529307 1188920.5767698626 0.017773832583134 0.01685179990749616 530.8631593223881 -2.7249825873525437 -0.05788574282344827 EPAITSQNS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 8 EPAITSQNSPEAR 13 0 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITS(0.001)QNS(0.999)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR 282.15 1.7813e-32 11105380000.0 2575668.0 2847514.0 2566389.0 2753296.0 2669778.0 2556612.0 2503615.0 2337834.0 2563770.0 2601569.0 True False 2561800.8896716163 2942291.782131436 2927714.2637469205 3101862.9912982015 3009758.403286029 2379879.4300573054 2382505.577711925 2512295.044360511 1931963.2362579324 2435534.6391047225 1.0518433400780158 1.2080681321013738 1.20208278574232 1.2735860707932343 1.2357690812364652 0.9771486686521217 0.9782269319674753 1.031516860414683 0.7932398928918959 1.0 21.21580707120885 2.730513011487748 22.03879159059962 0.965918231395812 1.199876962732752 0.6872949352384141 0.08016693786564415 71.01442511924071 194475.5301424048 0.02572478096869541 0.02472623360379192 537.6665414015682 -2.730513011487748 0.2339587313369399 EPDCFKDIVNMLMHHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPDCFKDIVNMLMHHDR 17 1 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ; 195.27 1.7859e-11 1229440000.0 1081910.0 1343830.0 1293190.0 1441340.0 1480050.0 1357400.0 1555490.0 949910.0 2100700.0 1461730.0 False True 1076085.1167715013 1388558.56918761 1475259.9113910168 1623813.4962160802 1668525.5945563577 1263566.1329759003 1480245.0061511542 1020797.107745244 1583010.6329378372 1368441.139949985 0.7863583499183829 1.0147009824904563 1.0780587255984835 1.1866155209828233 1.2192892670687614 0.9233616968151674 1.0817016259868184 0.7459561671629903 1.1567984816619108 1.0 20.384101951466953 EPEAAAPAPGTGGDSVCGETHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPEAAAPAPGTGGDSVCGETHR 22 0 Q08379;Q08379-2;A0A087WYC0;A0A1W2PQY5 Q08379 GOLGA2 Golgin subfamily A member 2 0 ; 170.91 6.6189e-12 676450000.0 214090.0 255230.0 220920.0 226431.0 213940.0 233072.0 219933.0 224433.0 247590.0 220218.0 False True 212937.36322763533 263725.17626020685 252023.61572893657 255097.14138350642 241183.99087827274 216960.28123247347 209294.0005643509 241181.33010768218 186574.7620360254 206163.49870188456 1.0328567596514544 1.2792040197259036 1.2224453761980747 1.2373535712661756 1.169867568201432 1.0523700005023742 1.015184559256016 1.169854662082709 0.9049844575339462 1.0 17.653429400240523 2.7963943880959894 3.744977919712742 1.047710755599079 1.2012430254705098 0.45304301138625735 0.0865727643173883 0.23191757872015945 6.609356732862115 0.027161161531801446 0.02830377418683967 625.7406775521737 -2.7963943880959894 0.15353226987143076 EPEDEEEEEEEEEEDEDEDLEELEVLER ddPTM_BT-474_Trastuzumab_2h_R1 1 EPEDEEEEEEEEEEDEDEDLEELEVLER 28 0 Q9NQC3-5;Q9NQC3;Q9NQC3-4;Q9NQC3-2;F8W914 Q9NQC3-5;Q9NQC3-2 RTN4 Reticulon-4;Reticulon 0 178.39 1.691e-17 122030000.0 53303.0 61708.0 53782.0 40909.0 72993.0 67998.0 58505.0 41389.0 65619.0 58458.0 False True 53016.022570520036 63761.91347672626 61354.03811847581 46088.075205505724 82288.22588659318 63297.458310074646 55674.88963919619 44477.65734908347 49448.07669955151 54727.16039158826 0.968733297894052 1.1650871892583463 1.12108937645349 0.8421426376909117 1.5036085427746977 1.1566004495238469 1.017317347379741 0.8127163373877485 0.9035381398511558 1.0 15.739969381440117 1.9988013894050172 4.453527778982866 0.8890181250742348 1.1303810725907901 0.26567794099907804 0.16406192295584912 0.2471075045209723 12.244893930312642 0.07054106397948277 0.045548991281271684 99.72439021423543 -1.9988013894050172 0.2413629475165553 EPELGLEELLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EPELGLEELLR 11 0 Q9NZL4;Q9NZL4-3;Q9NZL4-2 Q9NZL4 HSPBP1 Hsp70-binding protein 1 0 ;; 93.111 0.022087 44253000.0 29363.8 37443.0 35893.0 34429.0 34603.0 39698.0 36105.0 29907.7 40870.0 39546.0 False True 29205.70856342488 38689.267620228544 40946.42241245123 38787.70786991508 39009.48694195039 36953.7706990403 34358.46321550603 32139.564442223404 30798.136129942093 37022.14042296601 0.7888714220668789 1.0450305459980471 1.1059982471205492 1.0476895021945796 1.0536799465476492 0.9981532746852395 0.928051777206063 0.8681174042083803 0.8318842664979206 1.0 15.176100686112111 2.1684462324035447 2.9033931361855165 0.8873706413939546 1.0184211003204187 0.2264201630151954 0.08916459220433602 0.32830194574326077 5.597193037805645 0.03828556588955679 0.026287965044292427 147.38260634293934 -2.1684462324035447 0.13105045892646405 EPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPEQLR 6 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;F8W646;P51991;P51991-2 F8W6I7;P51991;P51991-2 HNRNPA1;HNRNPA1L2;HNRNPA3 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoprotein A3 0 ; 136.89 0.03018 3903200000.0 1634980.0 1802000.0 1543570.0 1616620.0 1612080.0 1686340.0 1616320.0 1583990.0 1578760.0 1531390.0 False True 1626177.4493433568 1861978.4806679958 1760891.2390490442 1821283.9262442165 1817368.8324532397 1569767.2850173716 1538132.4266579878 1702195.377138242 1189695.752300156 1433655.3791110578 1.1342875512744721 1.2987629438690635 1.228252803781122 1.2703777719395222 1.2676469247303384 1.0949404633006785 1.0728745897160523 1.1873114012892645 0.8298338426615679 1.0 20.45126684120299 1.8164998099673906 0.8214633076290216 0.9539731608218598 1.241682668423606 0.5840431447210671 0.08910357124780585 0.4338373730076666 0.5532316989941759 0.07769222844618356 0.03574538467646991 65.53899990568681 -1.8164998099673906 0.2877095076017462 EPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EPEQLRK 7 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;F8W646;P51991;P51991-2 F8W6I7;P51991;P51991-2 HNRNPA1;HNRNPA1L2;HNRNPA3 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoprotein A3 0 84.916 0.033984 1859900000.0 825480.0 768220.0 746290.0 720800.0 664240.0 775440.0 866620.0 726490.0 910420.0 769570.0 False True 821035.7073994492 793789.7383012039 851361.1451310348 812053.2060947109 748827.0267410674 721835.6579894159 824698.2797901072 780704.3728414706 686059.1900029819 720455.3837379748 1.139606595955503 1.1017888910521354 1.1816986372062002 1.1271387853075572 1.0393801526694 1.0019158358485432 1.1446902867340427 1.083626259812097 0.9522577046249091 1.0 19.458549564582842 3.286549170678575 5.815313667650758 1.0496856323561068 1.1392584667519483 0.4566541376382678 0.052732546324255516 0.20681058703725091 15.853183216637326 0.01529455166197482 0.02052150643739563 1934.4128598099555 -3.286549170678575 0.08957283439584152 EPFFHGHDNYDQLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 EPFFHGHDNYDQLVR 15 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2 P68400 CSNK2A1 Casein kinase II subunit alpha 0 ;;; 273.99 1.0569e-33 2215260000.0 692850.0 807670.0 718570.0 717430.0 694130.0 733170.0 742630.0 381924.0 820720.0 632814.0 False True 689119.772582871 834552.8077031745 819738.4100775947 808256.5644402453 782523.3410691564 682487.6835965391 706706.1497779047 410425.1082507757 618464.5530845633 592427.2687406774 1.1632141343657811 1.4087008680022164 1.3836945956591644 1.3643135741512307 1.3208766415032958 1.1520193610387028 1.1928994276042526 0.692785646284001 1.0439501787269743 1.0 19.176278522172847 2.133641861944995 1.9607318912624159 0.8891013237610271 1.3277600925317525 0.6494579866881661 0.12370216372651338 0.17679669890393096 1.3265792111197094 0.06348419373797774 0.037184116137128416 136.0322438955589 -2.133641861944995 0.4386587687707254 EPFHSILSVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EPFHSILSVLK 11 0 Q8NCW5-2;Q8NCW5;Q5T3I4 Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase 0 136.48 9.8418e-05 415390000.0 468580.0 561220.0 603080.0 466090.0 282870.0 427660.0 542670.0 375190.0 917650.0 492880.0 False True 466057.21734413214 579899.8684353455 687988.4219346703 525096.9462107162 318891.8177981539 398096.8708033544 516418.9788992841 403188.58297621674 691507.4533800186 461423.97642420174 1.010041179385249 1.2567614559808333 1.4910114278547604 1.1379923303508135 0.6911037009160237 0.8627572279368754 1.1191854027639945 0.8737920081672407 1.4986378877379658 1.0 18.815733445448565 3.473894601877556 24.999225414064394 0.9871474946397881 1.2632673074423408 0.18929506709713795 0.2261015553441886 137.1350767395212 1062476.884232842 0.06193353839925032 0.08429458012533647 2977.7936665069274 -3.473894601877556 0.2761198128025527 EPFPTIYVDSQKENER ddPTM_BT-474_Trastuzumab_2h_R1 6 EPFPTIYVDSQKENER 16 1 O43776;K7EIU7;O43776-2;K7EJ19;K7EPK2;K7EQ35 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;;;; 164.8 6.6113e-09 5696600000.0 2699990.0 3043120.0 2833320.0 3089740.0 2896500.0 3364650.0 3178260.0 3021020.0 4427540.0 3532610.0 False True 2685453.5538370926 3144408.4095951156 3232226.828341079 3480900.7672018236 3265352.1060994514 3132059.665034157 3024515.421667748 3246463.8528287234 3336432.092996426 3307155.805380416 0.8120130141640514 0.9507893170559045 0.9773433785860844 1.0525360678619198 0.9873596220616657 0.9470553700368773 0.9145367196632103 0.9816482935418547 1.0088524065205455 1.0 21.6571595841168 4.7456940816129105 2.729219858558434 0.9804188357106906 0.7779811864667511 0.6880467363899138 0.03451307018472731 0.2876503514038723 2.8491452499089824 0.009279351748957379 0.1323577260031745 55679.3403754003 -4.7456940816129105 -0.20243764924393948 EPGDQRPLGTYPDEHFTEEAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPGDQRPLGTYPDEHFTEEAPR 22 1 O15296-4;O15296;I3L1D5;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 ; 116.48 9.7372e-05 2049180000.0 637510.0 652930.0 637080.0 579180.0 610850.0 679470.0 754180.0 543210.0 674060.0 645660.0 False True 634077.716994019 674662.38034548 726775.3264013727 652504.1286153373 688638.1267083894 632499.8382003355 717697.4321526191 583747.0885644889 507946.94494124735 604453.4260226631 1.049010047252582 1.1161527940784384 1.2023677840385394 1.0794944664452486 1.1392740897171618 1.0463996248018963 1.1873494321557705 0.9657437007274108 0.8403409147393973 1.0 19.20527165653372 1.5942414851113385 5.110746112466659 0.9154117820446522 1.1165908652018075 0.6559820402478271 0.06074933263154027 0.07908082247008254 4.448872763145409 0.03181995347970999 0.014653372669572527 39.28633224067004 -1.5942414851113385 0.20117908315715527 EPGDQRPLGTYPDEHFTEEAPRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPGDQRPLGTYPDEHFTEEAPRR 23 2 O15296-4;O15296;I3L1D5;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 164.65 8.4391e-12 367820000.0 95190.0 135030.0 124090.0 134560.0 129730.0 125910.0 151660.0 110940.0 154340.0 127060.0 False True 94677.50761660315 139524.39192264134 141560.79339038456 151595.28220325243 146250.3465300473 117206.13806025921 144323.6264025383 119218.90614190542 116304.97505004317 118950.92201846113 0.7959375682847523 1.1729576329049993 1.1900773107787628 1.274435537201846 1.2295015797132645 0.9853319005132963 1.2133039740552776 1.0022528965635313 0.9777559776459125 1.0 16.860006928934673 1.6206522496417723 6.900265643019844 0.9892244030784053 1.1319161287314483 0.16518802611011885 0.1327396510754391 0.21131243041285958 21.648192491886398 0.0695390644480486 0.03408230330560424 41.74959334259951 -1.6206522496417723 0.142691725653043 EPGFEAGPEAS(ph)DDDLWTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPGFEAGPEASDDDLWTR 18 0 H9KVB4;O15417;O15417-2;H7C177 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 EPGFEAGPEAS(1)DDDLWTR;EPGFEAGPEAS(1)DDDLWTR 219.68 7.548999999999998e-19 685200000.0 151640.0 152944.0 143911.0 159545.0 160370.0 176992.0 166713.0 143454.0 171931.0 147483.0 True False 150823.58708878793 158034.64858339954 164172.41790316397 179743.38064148268 180792.1689125388 164756.95963435303 158648.45528449406 154159.26592465202 129560.90880736665 138070.50867345106 1.0923664187078432 1.1445938028458014 1.189047679193 1.3018231218847152 1.3094191558323889 1.1932813257320416 1.149039406088607 1.116525660735069 0.9383677227827822 1.0 17.07504567285845 1.4959117138710838 1.9126846871400063 0.9673967190765764 1.2066785063196 0.6487518762071149 0.06578113500952397 0.21006451090675818 1.4992060173820645 0.06095308587415596 0.02007147535086168 31.32648834915164 -1.4959117138710838 0.2392817872430235 EPHLNYS(ph)PTCLEPPVLSIHPGAID ddPTM_BT-474_Trastuzumab_2h_R1 4 EPHLNYSPTCLEPPVLSIHPGAID 24 0 O75054;O75054-2 O75054 IGSF3 Immunoglobulin superfamily member 3 1 EPHLNYS(0.955)PT(0.045)CLEPPVLSIHPGAID;EPHLNYS(0.813)PT(0.187)CLEPPVLSIHPGAID;EPHLNYS(0.707)PT(0.293)CLEPPVLSIHPGAID;EPHLNYS(0.95)PT(0.05)CLEPPVLSIHPGAID 172.0 3.8547e-12 528250000.0 139201.0 248488.0 323659.0 276479.0 360399.0 382317.0 256111.0 195330.0 276988.0 246928.0 True False 138451.55728268495 256758.7728658319 369227.37390554027 311481.2130519698 406293.67639776814 355888.3256674139 243721.9324909695 209906.51646564252 208728.01884904367 231168.84363430334 0.5989196256122986 1.1106980025042235 1.5972194526769277 1.3474186579603102 1.7575624379576984 1.539516831387581 1.0543026848225467 0.908022522263871 0.9029245272310146 1.0 17.81858744250372 2.068466291483852 5.921862402321289 0.9392949986172167 1.3474451930992146 0.2618726792164193 0.29839668644337314 0.27672990597433633 17.66361365453839 0.12191327473626279 0.08887897025772411 117.07557285661045 -2.068466291483852 0.40815019448199796 EPLGPALAHELR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPLGPALAHELR 12 0 Q13228;Q13228-4;Q13228-2;Q13228-3 Q13228 SELENBP1 Selenium-binding protein 1 0 187.44 1.0479e-05 116730000.0 128640.0 126060.0 102040.0 105490.0 87685.0 138430.0 92666.0 89677.0 143180.0 105500.0 False True 127947.41653324751 130255.8308951209 116406.34505242038 118845.02318386652 98851.16500028672 128860.65992916892 88183.39156150346 96369.15311057902 107895.2075137048 98766.89967690568 1.2954483430359716 1.3188206911548745 1.1785967306174263 1.2032879798054006 1.0008531737217297 1.3046947950245313 0.8928435725934109 0.9757231767508106 1.0924227435169107 1.0 16.591740003615794 3.59883843015279 0.5102361548042391 0.985778976515316 1.376425650763724 0.5118626960775741 0.10272412338844887 1.2215431230101865 0.531894904608327 0.07529471751036754 0.25550805537543203 3970.4381044716674 -3.59883843015279 0.39064667424840804 EPLIPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 EPLIPASPK 9 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 EPLIPAS(1)PK;EPLIPAS(1)PK;EPLIPAS(1)PK;EPLIPAS(1)PK;EPLIPAS(1)PK;EPLIPAS(1)PK 111.63 0.0021961 1518608000.0 4545840.0 4060830.0 3476740.0 3263300.0 3194590.0 4387150.0 4078550.0 3698340.0 5839350.0 3912600.0 True False 4521365.702530303 4195992.2717264285 3966234.7716341796 3676433.445406309 3601402.1006815974 4083876.646740256 3881254.954925966 3974328.9105899977 4400320.435781196 3662894.518254615 1.234369616705412 1.145540023283509 1.0828143567519677 1.0036962372474065 0.9832120697807266 1.1149315456362747 1.0596141755060424 1.0850241225302286 1.2013232742170166 1.0 21.804552725139384 4.513304508882109 2.2064810463119424 1.0660161519287066 1.2420841452350162 0.43919723013314516 0.060320975138192894 0.3911229523229256 3.0294931308371242 0.01573468655923504 0.11168113983599574 32606.524399835762 -4.513304508882109 0.17606799330630962 EPLPVEQDDDIEVIVDETSDHTEET(ph)SPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPLPVEQDDDIEVIVDETSDHTEETSPVR 29 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-2;Q676U5-4;Q676U5-5;C9J1B2;C9JAY7;C9JK97 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 EPLPVEQDDDIEVIVDETSDHTEET(0.591)S(0.409)PVR 148.97 1.6244e-07 120250000.0 46572.0 47506.0 45767.0 44895.0 48932.0 49031.0 45026.0 47631.0 54962.0 53747.0 True False 46321.26152663565 49087.208492016536 52210.59578610469 50578.70239681193 55163.200157313426 45641.60237655915 42847.92036397656 51185.46708531719 41417.35155306771 50316.82044487825 0.9205919832987121 0.9755626062618813 1.0376370232554948 1.0052046601835776 1.0963172885247063 0.9070843899319758 0.8515625587057152 1.0172635439353832 0.8231313343505111 1.0 15.618753139736937 2.6914308152690247 24.997801278452126 0.9232015411120198 1.0069081714540835 0.2853413413408942 0.06893896702328092 561.3707181430269 297752.18540535885 0.021975585887948637 0.020718833901312083 491.39509289240044 -2.6914308152690247 0.08370663034206371 EPLPVEQDDDIEVIVDETSDHTEETS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPLPVEQDDDIEVIVDETSDHTEETSPVR 29 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-2;Q676U5-4;Q676U5-5;C9J1B2;C9JAY7;C9JK97 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 EPLPVEQDDDIEVIVDETSDHTEET(0.218)S(0.781)PVR 156.12 5.998e-09 115300000.0 58830.0 63146.0 60070.0 47961.0 59645.0 72245.0 68634.0 56097.0 70181.0 68137.0 True False 58513.26581662746 65247.7764374369 68527.33386219997 54032.8576824479 67240.43720638755 67250.87319643734 65313.91121265869 60283.242994794164 52885.8329272196 63788.43832497943 0.9173020590114335 1.0228777839805807 1.0742908223129333 0.8470634977324526 1.0541163723717677 1.0542799755312717 1.0239145670867114 0.9450496763641157 0.8290817946942841 1.0 15.961007338292724 1.5494511715705745 5.001716598218515 0.9063986624337401 1.0008448805717118 0.17167892120504602 0.07591031147399216 0.2271768067383741 12.278262194145078 0.042627105844221566 0.01894838189906382 35.43652861801987 -1.5494511715705745 0.09444621813797172 EPNEDCKPR ddPTM_BT-474_Trastuzumab_2h_R1 5 EPNEDCKPR 9 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30 O60716-13 CTNND1 Catenin delta-1 0 ;;;; 171.33 5.2012e-05 1907130000.0 1318997.0 1427140.0 1264338.0 1220010.0 1188951.0 1622730.0 1538340.0 1381950.0 1985030.0 1542030.0 False True 1311895.666706343 1474641.4921756524 1442345.8005770976 1374463.1409095556 1340356.8623853107 1510554.494595538 1463924.6171705183 1485078.126399911 1495845.9545392457 1443616.3252016958 0.9087564637529647 1.0214912829900438 0.999119901456905 0.9520972552852792 0.9284716714450024 1.0463683931978878 1.0140676519199 1.0287207899179323 1.0361797164702005 1.0 20.461255932547516 2.7276483356732557 24.997526281881807 1.0260507289566527 0.9668065639495992 0.4849882573602048 0.03230337735433807 685.1081470408651 1569422.2286647614 0.010442044784621482 0.009930510256033875 534.131678039477 -2.7276483356732557 -0.05924416500705354 EPPAAAPSAGGAAPCS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPPAAAPSAGGAAPCSPR 18 0 A6NEL2 A6NEL2 SOWAHB Ankyrin repeat domain-containing protein SOWAHB 1 EPPAAAPSAGGAAPCS(1)PR 158.44 1.3062e-09 0.0 68739.0 71804.0 68394.0 77189.0 62341.0 86926.0 83622.0 66306.0 84544.0 82629.0 True False 68368.9168616208 74193.95273356538 78023.28070869493 86961.11948563358 70279.75682594375 80917.01022179393 79576.88439293853 71254.09041504578 63709.26403155918 77355.54647775402 0.8838269519727638 0.9591290619981871 1.0086320149148316 1.1241743280896082 0.908528994054161 1.0460401859492277 1.0287159488405053 0.9211245173678283 0.8235901229122691 1.0 16.23921711775345 -0.8279125104177535 4.81287559030883 1.0000000621310854 0.9723243383302617 0.010320579545593955 0.08355222550694613 5.665693638903316e-08 1.3775687582346325e-08 0.08089731791380973 0.019067637078184742 0.1486235017456785 0.8279125104177535 -0.027675723800823726 EPPLSLTIHLTSPVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPPLSLTIHLTSPVVR 16 0 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EKY0;K7EQR9;K7EPG3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ; 204.28 2.5604e-11 1378950000.0 416840.0 664600.0 584160.0 588930.0 581400.0 585300.0 630280.0 502650.0 677040.0 585710.0 False True 414595.779755278 686720.8092408158 666404.6503902568 663488.4776156464 655437.8437722158 544839.588648 599790.9484965827 540160.2954049822 510192.5638712011 548329.4863484406 0.7561070306764783 1.2523871619853637 1.2153361564196172 1.210017870886533 1.1953357608708137 0.9936354002705904 1.0938513492878996 0.985101674911082 0.9304488935453581 1.0 19.064683530900016 2.122092927630105 1.2977982910410795 0.9695429148334097 1.1356472015870918 0.15345603450751044 0.1382427303055612 0.7556635856460363 2.406774949144272 0.0914892786142099 0.04733513608984299 132.46249398729117 -2.122092927630105 0.16610428675368205 EPPSS(ph)PLQPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EPPSSPLQPQK 11 0 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 EPPS(0.038)S(0.962)PLQPQK;EPPS(0.025)S(0.975)PLQPQK;EPPS(0.016)S(0.984)PLQPQK;EPPS(0.003)S(0.997)PLQPQK 189.24 2.2474e-05 1194150000.0 3097570.0 2787490.0 2443000.0 2232350.0 2234550.0 2833460.0 2425950.0 2294960.0 2867070.0 2463140.0 True False 3080893.027292378 2880269.919576714 2786953.1650633384 2514965.2811119994 2519106.6972844885 2637589.5794473984 2308597.5304710353 2466221.568770749 2160519.015269711 2305940.2963997517 1.3360679945194394 1.2490652616087499 1.2085972778283065 1.0906463124993293 1.0924422896887451 1.143823881114983 1.001152342961972 1.0695079888326873 0.9369362331899548 1.0 21.136923729667263 7.999999974254199 0.25413435315597027 0.9750782685967737 3.424499447116127 0.8654040695819354 0.043012330634918924 15.915241207594269 0.21832648100470708 0.05142068998375216 16.760530831829136 99999994.07181041 -7.999999974254199 2.4494211785193536 EPPTIRPNS(ph)PYDLCSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPPTIRPNSPYDLCSR 16 1 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 EPPT(0.062)IRPNS(0.938)PYDLCSR 89.866 0.01485 112680000.0 42186.0 49364.0 39501.0 42837.0 47262.0 51273.0 44461.0 42521.0 53811.0 52996.0 True False 41958.87526330522 51007.05089883184 45062.397451153054 48260.159807823446 53280.53555617891 47728.618193659466 42310.25157248616 45694.132937263 40550.00008045788 49613.749907841724 0.8457106213750111 1.028082960743306 0.9082642923555895 0.9727174401746977 1.073906641911734 0.9620038453516633 0.8527928578484407 0.9209973650881162 0.8173137518486329 1.0 15.598452382718229 2.3376816785818244 7.508109111019334 0.8932419045875224 0.9713122730257824 0.16680174818205484 0.07286771629156223 0.3552672351996104 23.610438418891892 0.0242135570850297 0.02019390586561826 217.61141783378372 -2.3376816785818244 0.07807036843825998 EPQGALERPPVDHGLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPQGALERPPVDHGLAR 17 1 Q96HY7;C9JWN1 Q96HY7 DHTKD1 Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial 0 71.637 0.018081 178310000.0 456930.0 343260.0 288570.0 266090.0 275110.0 386970.0 423750.0 346180.0 586130.0 367040.0 False True 454469.9396496957 354685.2015949482 329198.14770459547 299776.966717178 310143.6277952769 360219.6747293974 403251.5936178 372013.7094664213 441686.11523961276 343615.19296124653 1.322613053669462 1.0322162956134193 0.9580430506218127 0.8724205822615863 0.9025899731687805 1.0483228975559982 1.1735557736624276 1.0826462772511272 1.2854091561935879 1.0 18.39043430114971 2.4054035305956605 5.506757576356509 1.1359148631257803 1.004075902136836 0.1458032107218029 0.13311592625991608 0.3694329016078448 20.297317721819592 0.04785137495763947 0.0399218329683053 254.33347819362146 -2.4054035305956605 -0.13183896098894432 EPQLAFHQR ddPTM_BT-474_Trastuzumab_2h_R1 5 EPQLAFHQR 9 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;;; 97.456 0.0066786 1347480000.0 1762470.0 2229290.0 1988820.0 2019770.0 1793220.0 1978120.0 2154920.0 1749630.0 2460740.0 2111230.0 False True 1752981.057348824 2303490.5700157383 2268828.568866666 2275472.6749083167 2021575.9377523435 1841377.220393614 2050678.2870061805 1880196.2750411178 1854323.599226662 1976489.49388506 0.886916456056187 1.165445390497833 1.1479082362370536 1.151269805353513 1.0228113754243437 0.9316402774163679 1.037535637477785 0.9512806826740754 0.9381904659567584 1.0 20.914508855794523 3.029051400863016 6.169035610739095 0.9730495490652986 1.0971900365289997 0.32074319122778316 0.07917483921331986 0.19191132220458054 22.68733208565739 0.022766336201251427 0.02690220242857951 1069.1814145521219 -3.029051400863016 0.1241404874637011 EPRPNS(ph)SPSPSPGQASETPHPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EPRPNSSPSPSPGQASETPHPR 22 1 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 1 EPRPNS(0.499)S(0.499)PS(0.002)PSPGQASETPHPR;EPRPNS(0.498)S(0.498)PS(0.002)PS(0.002)PGQASETPHPR;EPRPNS(0.5)S(0.5)PSPSPGQASETPHPR;EPRPNS(0.497)S(0.497)PS(0.005)PSPGQASETPHPR 290.66 1.3491e-55 1606400000.0 342990.0 394537.0 410160.0 381559.0 408665.0 441177.0 435360.0 379058.0 432580.0 448393.0 True False 341143.37994977157 407668.9255423466 467906.9628253694 429864.3302778742 460706.06540277286 410679.4724089503 414299.9735632935 407345.23277752247 325976.4552750272 419776.17485143937 0.8126792333331059 0.9711578454556703 1.1146582175392963 1.024032224863655 1.0975040819451432 0.9783296361550095 0.9869544733212077 0.9703867374599898 0.77654825310272 1.0 18.679260760649793 1.4375565897737757 6.444843449433812 0.8822869345235123 1.0027980486578236 0.17706244232314894 0.09225878562447916 0.27644980442694206 23.978862011760764 0.05806089672803583 0.022970124765344584 27.387764811753566 -1.4375565897737757 0.12051111413431137 EPRPNS(ph)SPSPSPGQASETPHPRPS ddPTM_BT-474_Trastuzumab_2h_R1 1 EPRPNSSPSPSPGQASETPHPRPS 24 2 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 1 EPRPNS(0.329)S(0.329)PS(0.329)PS(0.012)PGQASETPHPRPS 96.44 0.0033633 81929000.0 48269.0 50989.0 50298.0 49368.0 53022.0 53999.0 50773.0 50260.0 63984.0 56195.0 True False 48009.125067190056 52686.138041498605 57379.52120194667 55617.98373818491 59774.03741398415 50266.176229973265 48316.91601830458 54010.65641510876 48216.000541673966 52608.58698904001 0.9125720308205927 1.0014741139592809 1.0906873665681345 1.0572035274350144 1.1362030579995794 0.9554747448443208 0.9184226147030043 1.0266509614934314 0.9165043826727154 1.0 15.683010680880829 EPRPNSSPS(ph)PSPGQASETPHPRPS ddPTM_BT-474_Trastuzumab_2h_R1 7 EPRPNSSPSPSPGQASETPHPRPS 24 2 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 1 EPRPNS(0.007)S(0.05)PS(0.937)PS(0.007)PGQASETPHPRPS;EPRPNS(0.222)S(0.222)PS(0.545)PS(0.01)PGQASETPHPRPS;EPRPNSS(0.001)PS(0.908)PS(0.091)PGQASETPHPRPS;EPRPNS(0.003)S(0.027)PS(0.961)PS(0.01)PGQASETPHPRPS;EPRPNS(0.021)S(0.284)PS(0.695)PSPGQASETPHPRPS;EPRPNS(0.007)S(0.05)PS(0.94)PS(0.003)PGQASETPHPRPS;EPRPNS(0.244)S(0.244)PS(0.512)PS(0.001)PGQASETPHPRPS 249.0 1.8513999999999998e-38 14678108000.0 1249384.0 1510170.0 1601047.0 1668105.0 1701650.0 1775757.0 1657061.0 1363576.0 1763106.0 1741173.0 True False 1242657.4553636105 1560435.0955329577 1826460.5010500066 1879286.9219653402 1918345.0410302563 1653003.0982723492 1576902.6288422556 1465332.9652186278 1328612.1507100004 1630049.8484467962 0.7623432231521539 0.9572928686934504 1.1204936479644236 1.1529015040589288 1.1768628075136256 1.0140813177262182 0.9673953409123148 0.8989497877104066 0.8150745524598387 1.0 20.636484653416936 2.0324534288597706 2.4486938502950433 0.8953391780986633 1.0440685416259199 0.1814926448893157 0.11842451744868153 0.47676649213812883 5.4517588233093015 0.06542328074351492 0.03732010619126126 107.75896932309783 -2.0324534288597706 0.14872936352725663 EPRPNSSPSPSPGQASETPHPRPS ddPTM_BT-474_Trastuzumab_2h_R1 1 EPRPNSSPSPSPGQASETPHPRPS 24 2 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 0 176.48 1.9047999999999999e-13 273420000.0 36608.0 64645.0 70668.0 72787.0 72037.0 84672.0 80725.0 60411.0 63358.0 85879.0 False True 36410.90659553115 66796.66974627235 80617.44014273268 82001.82673698085 81210.48495324922 78818.82393644875 76820.0233505532 64919.17558084232 47744.26985370376 80398.12869528911 0.4528825133919396 0.8308236874446839 1.0027278178112176 1.0199469573199869 1.0101041687305803 0.9803564487822103 0.9554951663328257 0.8074712264372171 0.5938480239341853 1.0 16.294874301930708 4.713369158204871 3.332419121531982 0.9191559110240075 0.40307353945405006 0.5564644029632457 0.12487784226990749 0.2269072610127128 4.232029066249872 0.032321205470975126 0.2893133549505778 51685.551919040474 -4.713369158204871 -0.5160823715699574 EPS(ph)PALGPNLDGSGLLPR ddPTM_BT-474_Trastuzumab_2h_R1 8 EPSPALGPNLDGSGLLPR 18 0 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR 228.19 2.6843999999999998e-19 2785370000.0 268075.0 313079.0 281373.0 266005.0 313639.0 335731.0 317216.0 274012.0 316800.0 291513.0 True False 266631.7139859327 323499.64525474823 320987.87266204116 299681.2057258927 353579.0675660021 312522.7061957659 301871.05019720143 294460.16684474295 238728.88490251207 272908.3907631644 0.9770007922450479 1.1853781569343098 1.1761744362803457 1.0981018388180022 1.2955961763478552 1.145156091836618 1.106125939745002 1.0789707345432322 0.874758318111538 1.0 18.058057226419006 1.467391352509803 2.8547730082388907 0.9392057400484675 1.1479884702741834 0.4808670226652336 0.08194225409736852 0.19818951663349152 3.1113760718601347 0.06130110693572592 0.020960769905548692 29.335355292992915 -1.467391352509803 0.20878273022571592 EPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPSPALGPNLDGSGLLPRPIFYCSFPTR 28 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 EPS(1)PALGPNLDGSGLLPRPIFYCSFPTR 123.75 2.576e-05 127560000.0 8766.6 9963.7 16569.0 11170.0 13221.0 16807.0 21737.0 24320.0 19144.0 30363.0 True False 8719.401599660827 10295.335731316167 18901.77117967025 12584.120854714105 14904.615982993562 15645.171649422398 20685.498266596154 26134.88189445769 14426.217716457351 28425.207344927858 0.3067489180942316 0.3621903476863555 0.6649651117863542 0.4427099054023116 0.524345022434924 0.5503978021892634 0.7277167063580712 0.9194262535123126 0.5075149511277546 1.0 14.794883252304903 3.288664194324477 0.1800326000720323 1.086886748941622 2.5690722702820968e-17 0.6296512924329762 0.13145363709126104 5.967634126856563 0.36235519618157747 0.505963303200739 1.6701572781297458 1943.8564694648483 -3.288664194324477 -1.086886748941622 EPS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 7 EPSPEK 6 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 EPS(1)PEK;EPS(1)PEK;EPS(1)PEK;EPS(1)PEK;EPS(1)PEK;EPS(1)PEK;EPS(1)PEK 95.815 0.045018 21278760000.0 19987410.0 14449870.0 12393640.0 10779650.0 11623980.0 11324660.0 15958050.0 16941160.0 23076450.0 16505580.0 True False 19879800.005369995 14930825.187819133 14138556.784549959 12144352.584737577 13104224.952272706 10541812.90958218 15186098.155828986 18205395.3846674 17389568.106087655 15452179.753262011 1.2865369367175072 0.9662601281005149 0.9149878535140169 0.7859313558770801 0.8480502532017437 0.6822217368625139 0.9827803195612674 1.1781765210713508 1.1253796152880406 1.0 23.881307029681444 1.9920575966333829 24.758023857824114 1.1108567145877304 0.9013415238074176 0.227413520221317 0.15296443482034697 442.9533500954902 1380772.6894107189 0.061781594191388296 0.04356708996983197 98.18781521946966 -1.9920575966333829 -0.20951519078031278 EPS(ph)PEKNSK ddPTM_BT-474_Trastuzumab_2h_R1 5 EPSPEKNSK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 EPS(1)PEKNSK;EPS(1)PEKNSK;EPS(1)PEKNSK;EPS(0.991)PEKNS(0.009)K;EPS(0.971)PEKNS(0.029)K 94.402 0.007335300000000001 4703920000.0 3686910.0 3439710.0 3040860.0 3259680.0 3123930.0 3448960.0 4822390.0 4133100.0 8374340.0 4627150.0 True False 3667060.0862142104 3554198.6680013975 3468986.6563710645 3672355.1537774773 3521743.9685162315 3210541.513178548 4589112.57238122 4441532.909456543 6310596.117406882 4331841.325497584 0.8465361057039612 0.8204821924295989 0.8008111091124958 0.8477584652424096 0.8129900667845216 0.7411493801218039 1.0593907365372122 1.025322161112713 1.4567929993793125 1.0 22.04654896760044 1.8492800211956293 1.7936575597925992 1.204299083300298 0.8154404092851868 0.6296277570068854 0.12152938480166169 0.2018657742241789 1.2303936183320436 0.0760527372824066 0.03367618050972478 70.6773115341464 -1.8492800211956293 -0.3888586740151112 EPS(ph)PLPELALR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPSPLPELALR 11 0 Q13207 Q13207 TBX2 T-box transcription factor TBX2 1 EPS(1)PLPELALR;EPS(1)PLPELALR 121.01 0.00044103 183592000.0 150439.0 168249.0 146204.0 149847.0 139951.0 154123.0 147907.0 141293.0 173148.0 150119.0 True False 149629.05313934412 173849.06625633154 166788.25237205086 168817.61483584103 157772.93029543405 143468.83977651736 140752.17335039037 151837.00113131624 130477.99546433112 140538.27689665803 1.0646854112874231 1.237022895792069 1.186781680087733 1.201221607121152 1.122633162860316 1.020852417893342 1.0015219800502437 1.0803960635077836 0.9284160752894065 1.0 17.100603589710136 2.868248271543882 2.9116468492067185 1.0154385824657197 1.177573456229209 0.6794135514839904 0.05420519946284438 0.15855049416249176 2.586659337372858 0.01714072175417021 0.018450803428858235 738.3261857488087 -2.868248271543882 0.16213487376348934 EPSAPSIPTPAYQSS(ph)PAGGHAPTPPTPAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 EPSAPSIPTPAYQS(0.014)S(0.985)PAGGHAPTPPTPAPR 141.82 3.2683e-08 313340000.0 77733.0 70546.0 68002.0 69950.0 72896.0 88053.0 94176.0 66803.0 81572.0 81105.0 True False 77314.49416494822 72894.08096404237 77576.09051602014 78805.66282786499 82178.87351155732 81966.10336446667 89620.34709274325 71788.1790787606 61469.67360879954 75928.80946251609 1.0182497883509711 0.9600319230611422 1.0216950728605492 1.0378888248836446 1.082314790568746 1.079512558470063 1.1803207205163184 0.9454669391886146 0.8095698331625413 1.0 16.21235976693704 1.5373482358699508 7.049707037445432 0.8963824264811512 1.051630800497219 0.45647060539949913 0.06871178323767638 0.105169202298438 9.965945494860895 0.038379580805468716 0.017713347632259447 34.462615597927446 -1.5373482358699508 0.15524837401606784 EPSAT(ph)PPISNLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 EPSATPPISNLTK 13 0 J3KP58;P30622-2;P30622-1;P30622;F5H6A0;F5H1T5 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 EPSAT(1)PPISNLTK;EPSAT(1)PPISNLTK 191.89 3.5552e-05 328880000.0 772900.0 748020.0 673590.0 679720.0 722340.0 865000.0 833680.0 833740.0 1115720.0 831850.0 True False 768738.7922772627 772917.3935123612 768425.6170507635 765772.4823067387 814325.7173553868 805204.5859909776 793351.7134331276 895957.9124459361 840765.7558820414 778760.6208173847 0.9871310537895417 0.9924967606876547 0.986728908100446 0.9833220399652288 1.0456688430145236 1.0339564745143859 1.0187362999947638 1.1504920619965884 1.0796202753544168 1.0 19.570820408330864 2.6281748312365467 1.089349964268496 1.0844352866109328 0.9880344956734523 0.3757680831322602 0.03990998984257861 0.42623115907792875 1.0439512468033396 0.022112809533766202 0.018298079980146015 424.79053482216494 -2.6281748312365467 -0.09640079093748055 EPSTAS(ph)GGGQLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPSTASGGGQLNR 13 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 EPS(0.003)T(0.082)AS(0.915)GGGQLNR;EPST(0.02)AS(0.98)GGGQLNR 176.98 1.6608e-05 815620000.0 307120.0 358450.0 328560.0 289670.0 312370.0 334360.0 381730.0 303020.0 328350.0 342500.0 True False 305466.5000442396 370380.7915623992 374818.3921052846 326342.19229946553 352148.4679379548 311246.4801987787 363264.2615497882 325632.891104382 247432.54216458267 320641.3567709974 0.9526734265361917 1.1551248263552159 1.1689645898454095 1.0177794766897137 1.0982627802110376 0.9706997354713398 1.1329301535148883 1.0155673440995 0.7716800622862241 1.0 18.2906009927565 1.430465490049673 6.499181316263518 0.8853460134375527 1.0725058227128614 0.4178386115420283 0.08621436129279639 0.16512109819280948 13.69310241676785 0.05201336413758345 0.020218428339249587 26.94421219482863 -1.430465490049673 0.18715980927530873 EPSVPASCAVSATYERS(ph)PS(ph)PAHLPDDPK ddPTM_BT-474_Trastuzumab_2h_R1 3 EPSVPASCAVSATYERSPSPAHLPDDPK 28 1 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 2 EPSVPASCAVS(0.004)AT(0.023)Y(0.006)ERS(0.968)PS(0.999)PAHLPDDPK;EPSVPASCAVS(0.006)AT(0.006)Y(0.081)ERS(0.909)PS(0.997)PAHLPDDPK;EPSVPASCAVSATYERS(1)PS(1)PAHLPDDPK 168.52 6.5451e-12 715130000.0 528430.0 446780.0 408732.0 397850.0 419880.0 550480.0 510750.0 457360.0 700660.0 513150.0 True False 525584.9915940925 461650.80221578677 466277.9128377689 448217.76920752035 473349.22917626065 512426.61329053587 486043.07124552573 491490.52562702144 527991.7313629865 480400.3276701815 1.0940562720742615 0.9609710394134718 0.970602820150222 0.933008874871634 0.9853224527799203 1.0666658280098884 1.0117459194974119 1.0230853255463512 1.0990661349537605 1.0 18.873877609510302 2.778956318724593 14.059425564479506 1.0376109196804089 0.9831318661396228 0.22214827445391216 0.047312700130328025 5.094987784733544 1771.8150978884178 0.014271227623624339 0.015128084077156247 601.1132745575037 -2.778956318724593 -0.05447905354078608 EPTEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 EPTEEER 7 0 Q15056;Q15056-2 Q15056;Q15056-2;REV__B4E135 EIF4H Eukaryotic translation initiation factor 4H 0 ;; 173.59 0.0019951 1838860000.0 1140150.0 1446710.0 1244380.0 1240460.0 1270570.0 1210490.0 1419800.0 1249960.0 1440080.0 1346030.0 False True 1134011.5590825733 1494862.8677953368 1419577.8876551448 1397502.1088127715 1432369.5582415962 1126811.6754869581 1351118.849837294 1343238.3623682698 1085191.5800833637 1260125.2130057379 0.8999197439892901 1.1862812142530554 1.1265371671034732 1.1090184486344439 1.1366882778458256 0.8942061184532678 1.0722099961911815 1.0659562625243286 0.8611775789287556 1.0 20.265135664324948 2.7654475861480505 24.94743207393744 0.9974363931142616 1.0998428571617531 0.25076421860281706 0.09439851999630754 1117.983316434464 1037333.4166840294 0.02825881487519623 0.02996518267308669 582.7034456154182 -2.7654475861480505 0.10240646404749154 EPTGVEENKTDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_BT-474_Trastuzumab_2h_R1 3 EPTGVEENKTDSLFVLPSRDDATPVRDEPMDAESITFK 38 3 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 EPTGVEENKTDS(0.001)LFVLPS(0.013)RDDAT(0.986)PVRDEPMDAESITFK;EPT(0.002)GVEENKT(0.019)DS(0.194)LFVLPS(0.194)RDDAT(0.591)PVRDEPMDAESITFK;EPTGVEENKTDSLFVLPSRDDAT(1)PVRDEPMDAESITFK 281.61 5.841199999999998e-77 1765280000.0 730551.0 607848.0 579153.0 552201.0 595890.0 787086.0 796487.0 779466.0 1160340.0 793172.0 True False 726617.7945878471 628079.853228125 660692.7083118814 622109.5899815552 671773.0593832558 732676.5974211498 757957.8809341846 837633.7109681494 874389.7547594082 742551.0838912865 0.9785425007799569 0.8458405985170971 0.8897606139763043 0.8378003931008139 0.9046826190904961 0.9867019432274071 1.020748467515743 1.1280486004795645 1.1775482841897293 1.0 19.50213075414351 2.3080085965661383 1.5443531861520627 1.1122138596165205 0.8846535110856376 0.7181077890943162 0.05693511081526717 0.18450689129249637 0.8809385805137814 0.029192715421508503 0.018849978358322556 203.23972404696525 -2.3080085965661383 -0.22756034853088292 EPTPSIAS(ph)DISLPIATQELR ddPTM_BT-474_Trastuzumab_2h_R1 4 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 EPTPSIAS(1)DISLPIATQELR;EPTPSIAS(1)DISLPIATQELR;EPTPSIAS(1)DISLPIATQELR;EPTPSIAS(1)DISLPIATQELR 255.19 3.9537e-36 413726000.0 119252.0 132896.0 156407.0 133208.0 160071.0 202599.0 130994.0 118298.0 154094.0 149647.0 True False 118609.96048214284 137319.36302267166 178427.74608598516 150072.11914187612 180455.09303485064 188593.80799674732 124657.31977432466 127125.9974650723 116119.59845381202 140096.40034075748 0.8466310354416458 0.9801776682960361 1.2736069281722733 1.0712061036318894 1.2880780133959788 1.3461716899080152 0.8897967361839403 0.907418014708892 0.8288549753696276 1.0 17.096060361845407 2.196809821641265 24.99303096367964 0.8994033809139053 1.1377584158405598 0.36762103100312415 0.14620406652368895 161.75684093365078 96830.60345381752 0.05776624534488294 0.04266356108452571 157.3293765341871 -2.196809821641265 0.23835503492665455 EPVGILTSNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPVGILTSNHR 11 0 P43155-2;P43155;P43155-3 P43155-2 CRAT Carnitine O-acetyltransferase 0 122.51 0.0010399 0.0 128930.0 196560.0 240180.0 191080.0 259670.0 256480.0 204910.0 188360.0 182010.0 211550.0 False True 128235.8552054697 203102.38077697097 273995.25631801604 215270.7084081264 292737.4353153271 238750.14128897802 194997.72046778412 202416.37967269952 137156.07430904717 198048.6978829327 0.6474965832962476 1.0255173750095823 1.3834741618951498 1.0869584637985032 1.4781083564021473 1.2055122999602053 0.9845948120449042 1.0220535748856505 0.6925371172605266 1.0 17.595495690377597 1.7254447946335383 1.952715843307722 0.8633060228030601 1.1504094343435527 0.17698199347368637 0.22551073282675085 0.5111521435747307 3.977861605241009 0.16377917076286017 0.06666114774991976 53.14284426578772 -1.7254447946335383 0.28710341154049257 EPVQTLYSQSPALELDKFLEDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPVQTLYSQSPALELDKFLEDVR 23 1 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 0 116.45 0.00043342 96463000.0 31001.0 30580.0 33031.0 29361.0 26030.0 27529.0 35864.0 33560.0 44645.0 35662.0 False True 30834.09406053489 31597.836813999627 37681.47768940119 33078.09958954886 29344.76620810243 25625.98502629556 34129.12130621544 36064.417614227 33642.837962350495 33386.02062822573 0.9235630206993478 0.9464391448702842 1.1286603488630187 0.9907769469711362 0.8789536954665786 0.7675663209957535 1.0222578391795958 1.0802251042682476 1.0076923613324449 1.0 15.026956524401362 2.0245162719014838 24.999542693790573 1.0414753091421776 0.9434388680949701 0.19211501401682107 0.08740964900264292 375.71191064169204 383116.5710996043 0.035966330545853756 0.026561755083402413 105.80745585962757 -2.0245162719014838 -0.09803644104720743 EPVS(ph)PMELTGPEDGAASSGAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 EPVSPMELTGPEDGAASSGAGR 22 0 A0A0C4DFL8;F5GX28;O94953;K7EQ54 A0A0C4DFL8 KDM4B Lysine-specific demethylase 4B 1 EPVS(1)PMELTGPEDGAASSGAGR 196.76 1.8084e-24 0.0 28317.0 37630.0 36525.0 41492.0 36158.0 44841.0 41131.0 29183.0 30968.0 42864.0 True False 28164.544418314472 38882.49180218464 41667.40251900876 46744.882945729405 40762.506974743315 41741.24721436009 39141.33639432152 31360.78364827134 23336.35134993999 40128.38282228331 0.7018609382552712 0.96895237404367 1.0383523976917115 1.164883298505913 1.0158023849420583 1.0401926087881408 0.9754027857954525 0.7815112756265045 0.5815422827600544 1.0 15.292335396088902 1.726984436560796 4.164115039654888 0.7574144271784147 0.9992656184787414 0.2758939296657619 0.1449888743092832 0.20791696567413676 8.183674002889532 0.07734548899208528 0.0381759904709146 53.331578316444045 -1.726984436560796 0.24185119130032673 EPWLLPSQHNDIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 EPWLLPSQHNDIIR 14 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 136.81 2.4884e-05 1569510000.0 840160.0 1539300.0 1635070.0 1506820.0 1343590.0 1339280.0 1629470.0 1293150.0 1516290.0 1408950.0 False True 835636.671910551 1590534.6699735015 1865273.6437167884 1697583.2575022655 1514688.2224181464 1246698.7259260085 1550646.3109201107 1389651.4194826467 1142620.646745044 1319029.6047372178 0.6335238185021858 1.2058369761081853 1.414125685289979 1.2869940533597535 1.148335273884856 0.9451635667983213 1.1755962909028388 1.053540735167577 0.8662585302417692 1.0 20.33104551460223 2.872420746362587 7.2009000020197345 1.0291949509776424 1.1669344375178985 0.07896145756308637 0.2044736519801359 0.6830582495950723 37.016640856441335 0.06416237552650557 0.06819213322362268 745.453823055283 -2.872420746362587 0.13773948654025614 EQAEAEVASLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQAEAEVASLNR 12 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4 P06753-2;P06753-3 TPM3 Tropomyosin alpha-3 chain 0 ; 201.0 3.5702e-07 2027200000.0 588130.0 623660.0 539520.0 651540.0 560450.0 672090.0 550510.0 595990.0 723280.0 704010.0 False True 584963.573427386 644418.1460895689 615479.7264080932 734024.8971960993 631819.9854525944 625630.0002296835 523879.72814757604 640465.8001758986 545037.3354554573 659079.4790667158 0.8875463309155354 0.9777548331531911 0.933847503915064 1.113712261585673 0.9586400510410034 0.9492481864487752 0.7948657859738126 0.9717580663910595 0.8269675399805393 1.0 19.33009292622765 2.466341538694692 24.94779812173859 0.8969822596416104 0.977385301779747 0.17494201361996964 0.07774127137164026 345.0364043591035 798521.3630612958 0.02595696935685123 0.02173584643360445 292.6452899804775 -2.466341538694692 0.08040304213813665 EQAEAEVASLNRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQAEAEVASLNRR 13 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4 P06753-2;P06753-3 TPM3 Tropomyosin alpha-3 chain 0 164.93 5.803e-05 506970000.0 227090.0 322680.0 264300.0 316580.0 304520.0 287740.0 315860.0 266220.0 416480.0 339350.0 False True 225867.37267207078 333420.20873582107 301511.1426632177 356658.99554032146 343298.81696854957 267849.2110671028 300580.64509762434 286086.6882377688 313844.08454608027 317692.392467848 0.7109624845515607 1.0495064302478214 0.9490662974994972 1.122655134325941 1.08060131469246 0.8431086718395701 0.9461373713191591 0.9005147589951248 0.9878866853188585 1.0 18.277271017807962 4.748038283462298 24.4376955009537 0.9795398342756846 0.7109622872841479 0.5189097722005203 0.07936108578739093 838.3484784645246 2161578.228985753 0.02020253766139437 0.25649310601416364 55980.69468229168 -4.748038283462298 -0.2685775469915367 EQAGGDATENFEDVGHSTDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQAGGDATENFEDVGHSTDAR 21 0 P00167-2;P00167;P00167-3 P00167-2 CYB5A Cytochrome b5 0 132.36 2.9118e-08 0.0 69456.0 90263.0 78831.0 66588.0 84377.0 103580.0 91002.0 61927.0 83208.0 98108.0 False True 69082.05661328706 93267.34938986429 89929.71958866465 75018.03397257862 95121.91080833889 96419.75840109323 86599.88559860077 66548.30719893426 62702.50333007647 91846.6634455153 0.752145521914005 1.0154680190989385 0.9791288677787647 0.8167747325636967 1.0356599493106955 1.0497905398413385 0.9428745950033668 0.7245587885553582 0.6826867844499594 1.0 16.486939692415294 1.7588117193621071 15.525190905563656 0.7778458089743231 0.948939064055927 0.21532197490785887 0.11853631303511099 0.6581865470960024 508.48589536533876 0.05292787201891715 0.02925353681416739 57.38676181849323 -1.7588117193621071 0.1710932550816039 EQALQEAMEQLEQLELER ddPTM_BT-474_Trastuzumab_2h_R1 3 EQALQEAMEQLEQLELER 18 0 Q9UH65;E7EMB1 Q9UH65 SWAP70 Switch-associated protein 70 0 ;; 168.41 4.8364e-11 46751000.0 34853.3 40376.3 34159.8 35782.5 37432.4 40848.7 38771.899999999994 32619.2 39533.8 43184.0 False True 34665.65370536565 41720.20073751124 38969.20291769573 40312.56083113763 42199.19426078272 38024.92551649673 36896.35507395864 35053.41034094141 29791.22471577943 40427.96014831752 0.857467296845753 1.0319640314389569 0.9639171201002952 0.9971455567692129 1.0438121069172697 0.9405600821064232 0.9126444900657237 0.8670585953963897 0.736896558878676 1.0 15.303065791713374 2.0990031486217413 2.057777365956585 0.8554049228628334 0.9814612697265113 0.2759430850328677 0.0763779657749423 0.36005791324760866 2.9477705139124724 0.038409494877436105 0.022097084189133274 125.60390699067938 -2.0990031486217413 0.12605634686367784 EQAPDIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 EQAPDISPK 9 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 EQAPDIS(1)PK;EQAPDIS(1)PK;EQAPDIS(1)PK;EQAPDIS(1)PK 92.19 0.010746 1309500000.0 2974460.0 2669830.0 2275140.0 2132630.0 2212240.0 3154180.0 3073610.0 2700610.0 4720410.0 2975570.0 True False 2958445.8378535737 2758693.6776036867 2595459.936128613 2402620.7393365186 2493955.651026222 2936138.9607410664 2924927.741969571 2902143.2316197157 3557128.2057533627 2785666.575086355 1.0620243873809134 0.9903172555811592 0.9317195242751385 0.8624940116036816 0.8952814645266401 1.0540166533211344 1.0499920443202715 1.041812849238696 1.2769396874581418 1.0 21.409591157034956 2.2274315515240386 1.4922118630990304 1.1092974754944225 0.9483899120152294 0.38008130845888044 0.08611617983373188 0.43730051578366574 1.9096567444733483 0.0507601501627145 0.029918891835467573 168.82297592581116 -2.2274315515240386 -0.1609075634791931 EQCCYNCGKPGHLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EQCCYNCGKPGHLAR 15 1 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;; 206.63 2.2838000000000003e-09 10470950000.0 7758750.0 7740780.0 7862070.0 8265290.0 7871590.0 8852940.0 8432800.0 7896420.0 10817170.0 8934500.0 False True 7716977.752078154 7998427.182899676 8968981.117662508 9311674.866540726 8873990.327930734 8240957.095379168 8024873.247575653 8485690.957608284 8151423.396151844 8364292.560789708 0.9226097360886145 0.9562586584303444 1.0722940466845303 1.1132650847475345 1.0609373432883489 0.9852545251718341 0.9594204398343033 1.0145138869708683 0.9745502487997902 1.0 22.995812093783808 2.7039814487149556 23.01986371823778 0.9875906816035521 1.0287729179921392 0.11234518260102488 0.05333331879591855 584.8778842439307 389360.136341823 0.01927553211900576 0.018174727301421376 505.8030557026323 -2.7039814487149556 0.04118223638858709 EQDDLLVLLADQDQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EQDDLLVLLADQDQK 15 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;; 228.25 1.4461e-12 177516000.0 490806.0 428745.0 380807.0 376254.0 374203.0 521333.0 483196.0 461313.0 659793.0 487933.0 False True 488163.55502967315 443015.5181431745 434421.31556621945 423887.71782180865 421855.53397505 485294.4767958782 459821.9634920278 495738.51855994936 497195.8559232417 456792.6981995414 1.068676353527061 0.9698393163667677 0.9510250870438619 0.9279651787179863 0.9235163688863745 1.0623954338777244 1.0066315974498417 1.0852592883246903 1.0884496575425795 1.0 18.801180063939 2.724961076216145 24.452900833475766 1.0528502036297769 0.9651053607467109 0.4278184391211818 0.046254448516656464 548.1806071514782 985664.0276570225 0.015307380940498829 0.014507778155893622 530.836865672573 -2.724961076216145 -0.08774484288306594 EQDFFFELDAMDHLQSFIADCDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQDFFFELDAMDHLQSFIADCDR 23 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ; 89.946 0.005675100000000001 50724000.0 26775.0 32273.0 29126.0 31248.0 27217.0 30260.0 29544.0 25053.3 35639.0 34221.0 False True 26630.84637498215 33347.18729555953 33226.68763226964 35203.99359607036 30682.92362220222 28168.197424378042 28114.843850959973 26922.904464079642 26856.24598813327 32036.986481927874 0.8312531639018127 1.0408965061171014 1.0371352390154698 1.0988547133148432 0.9577343873934746 0.879239919780463 0.8775745454966437 0.8403694423402434 0.8382887698655094 1.0 14.967450828418201 2.8618404630106 3.631622771119355 0.873308992408233 1.009078676371697 0.3176076062262436 0.07769039038635045 0.24574029961193894 5.861090575514421 0.024188942265215733 0.025897972387540623 727.5125055485665 -2.8618404630106 0.135769683963464 EQDFFFELDAMDHLQSFIADCDRR ddPTM_BT-474_Trastuzumab_2h_R1 12 EQDFFFELDAMDHLQSFIADCDRR 24 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ;;;;;;;;;;; 266.46 1.3034e-44 2047089200.0 1105411.1 1469985.2 1269381.1 1383419.0 1324142.1 1369532.0 1348182.0 1159457.4 1646261.0 1358828.0 False True 1099459.6894603197 1518912.7687571812 1448098.9252216874 1558559.7035548545 1492763.747629881 1274859.476371558 1282965.2861046214 1245981.998793379 1240562.0353172172 1272106.4336888196 0.8642827835341862 1.1940139036579505 1.1383473008799503 1.2251802697321368 1.1734582170936791 1.0021641606471205 1.008536119406545 0.9794636406171724 0.9752030195459896 1.0 20.278787951370383 2.69207500528076 8.09544152823197 0.9917637955008927 1.1301314488683525 0.3108329668843788 0.09306537975167581 0.37266901050268575 60.122488379486136 0.029754827878954514 0.02814478808924391 492.12452122040446 -2.69207500528076 0.13836765336745982 EQDLPLAEAVRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQDLPLAEAVRPK 13 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 ; 115.04 0.00063456 651230000.0 536550.0 530600.0 498970.0 464860.0 500250.0 620090.0 574600.0 573950.0 746030.0 628420.0 False True 533661.2744163085 548260.700245527 569220.6388750111 523711.2283368306 563953.8722859486 577224.6378348506 546804.4028148387 616781.0634590463 562180.9027898381 588313.6975825704 0.9071032624417327 0.9319189787665586 0.9675461258406626 0.8901904383474384 0.9585938158558635 0.9811511107198665 0.9294436030670427 1.0483880725426769 0.9555801693890282 1.0 19.16622610104056 2.427885971088546 1.0203569667152363 1.0011169770110082 0.9278009625043709 0.382290247861497 0.03447554099991879 0.5103400814113931 1.0587250805208888 0.021710570969716278 0.01460993314754901 267.84649713173457 -2.427885971088546 -0.07331601450663727 EQDLPLAEAVRPKT(ph)PPVVIK ddPTM_BT-474_Trastuzumab_2h_R1 3 EQDLPLAEAVRPKTPPVVIK 20 2 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK 123.19 0.0013885 17027500000.0 6870610.0 6182790.0 6094880.0 6908510.0 6109410.0 8411940.0 9350860.0 8166450.0 14118300.0 8965650.0 True False 6833619.399156536 6388580.427574526 6952986.126353351 7783126.65765451 6887407.150189893 7830442.387376831 8898523.178045891 8775871.967392854 10639034.140527569 8393454.541120864 0.8141605301699737 0.7611383842345076 0.8283819364588882 0.9272852577593336 0.8205688273460461 0.9329224753662813 1.06017410762763 1.045561386482582 1.2675393770711754 1.0 23.000833280297673 2.324534433417518 1.1668066601318698 1.1227750405768997 0.8199113796216722 0.734633801413792 0.07480935481957403 0.23788872632842545 0.6353644544532935 0.04585789912175077 0.028187195055200252 211.12245794586124 -2.324534433417518 -0.30286366095522754 EQDLQLEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 EQDLQLEELR 10 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;; 237.29 8.3996e-12 2848260000.0 1291110.0 1531110.0 1358870.0 1441040.0 1414500.0 1431390.0 1452410.0 1333460.0 1619240.0 1419410.0 False True 1284158.8072158066 1582072.070774458 1550187.0844902259 1623475.516246842 1594628.1906016492 1332441.3784296252 1382151.3795549965 1432969.5563726786 1220199.9987043662 1328822.038581959 0.9663888541359426 1.1905823540244356 1.1665874281739748 1.2217403603414947 1.200031414517585 1.0027237205152983 1.040132793876558 1.078375820664338 0.9182568946602452 1.0 20.341716475107088 2.731843120136613 24.671955845760873 1.020811462923306 1.1563834105290336 0.4543359682921423 0.07649378910946902 436.2777008571283 1602351.4212965441 0.024550199034146996 0.023629054924192695 539.3157707009809 -2.731843120136613 0.13557194760572755 EQDRDVQLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQDRDVQLSK 10 1 Q86TN4;Q86TN4-4;F5H8A0;Q86TN4-3 Q86TN4 TRPT1 tRNA 2-phosphotransferase 1 0 124.12 0.00040482 336810000.0 201140.0 255780.0 210740.0 234800.0 257380.0 346390.0 329160.0 296380.0 394650.0 338390.0 False True 200057.08458875463 264293.4826777247 240410.36021508276 264525.6559254137 290155.81738922064 322444.8746143523 313237.2732866905 318497.38058714534 297393.79553906684 316793.6604897455 0.6315059596820133 0.8342764254472187 0.7588862726716867 0.8350093102130631 0.9159142166565322 1.0178387853970006 0.9887738056451099 1.0053780119676827 0.9387618271126779 1.0 18.27318393967909 3.483030153564207 0.9675072627769238 0.9973356992939267 0.7114651299834569 0.836612883791445 0.04861140221611356 0.22137594801574167 0.42215978927989023 0.018965157313037807 0.04301135315275153 3041.096165142599 -3.483030153564207 -0.28587056931046984 EQDRVHS(ph)PCPTSGSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQDRVHSPCPTSGSEK 16 1 Q96LT9-2;Q96LT9;X6RLP6 Q96LT9-2 RNPC3 RNA-binding protein 40 1 EQDRVHS(0.999)PCPT(0.001)SGSEK 155.87 1.3121e-07 479900000.0 290970.0 268500.0 259590.0 288680.0 279830.0 318020.0 348750.0 292100.0 444370.0 378790.0 True False 289403.4498498059 277436.8601883228 296138.0156032715 325226.85840097273 315464.69181764533 296036.0259385559 331879.6301456229 313897.98525374563 334860.9677529333 354615.2979015651 0.8161053726738522 0.782360100734668 0.8350965605704753 0.9171258553297098 0.889596962354435 0.8348089540703634 0.9358863876136183 0.8851789167338125 0.9442936323798552 1.0 18.435895249056575 7.9999999973280955 0.0859829097980711 1.0916284044038118 0.2806743813642291 0.7295813300454939 0.03316116256861422 88.67795294646889 0.5507837313568129 0.7185483360101409 8.500412692874889 99999999.38477126 -7.9999999973280955 -0.8109540230395826 EQDRVHS(ph)PCPTSGSEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQDRVHSPCPTSGSEKK 17 2 Q96LT9-2;Q96LT9;X6RLP6 Q96LT9-2 RNPC3 RNA-binding protein 40 1 EQDRVHS(1)PCPTSGSEKK;EQDRVHS(1)PCPTSGSEKK 119.38 6.4186e-05 147979000.0 147422.0 136568.0 133154.0 150702.0 155427.0 185256.0 188356.0 162086.0 319170.0 210006.0 True False 146628.2963321239 141113.58332290078 151900.9258046843 169780.8577481759 175219.70716199523 172449.68876571645 179244.50069020482 174181.6803760307 240514.830158885 196603.2372848177 0.7458081482132694 0.7177581878698699 0.7726267781879222 0.8635710179187721 0.8912351067147266 0.8771457232715341 0.911706761117746 0.8859553015584121 1.2233513215779497 1.0 17.5849275518442 2.825753463902488 0.4071662231069044 1.0587699670510176 0.6878442202113457 0.6475963890285632 0.08156807033324516 0.9801216304447485 0.32205657864514164 0.08274700810378305 0.14462690429397468 669.504443705127 -2.825753463902488 -0.37092574683967183 EQDVVT(ph)GVSPLLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQDVVTGVSPLLFR 14 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 EQDVVT(0.537)GVS(0.463)PLLFR 142.91 0.00010364 17009000.0 29077.0 28827.0 28348.0 27288.0 25567.0 31364.0 27791.0 30820.0 39450.0 31971.0 True False 28920.452662758387 29786.489268710502 32339.151994766904 30742.658002098335 28822.805902518434 29195.880502914515 26446.643158070303 33119.94490078892 29728.076102916963 29930.583408249815 0.9662508835289524 0.9951857223237555 1.0804718222048826 1.0271319333396183 0.9629884426032924 0.9754531044278678 0.8835993203787926 1.1065586142787986 0.9932341009672055 1.0 14.869332779734803 1.7049394073476538 24.999999966463164 1.0401222576562863 0.9889966866637301 0.1337436800642946 0.05528854656323072 1.3921265948179367 1028.1224484856355 0.026274930699277464 0.014570753889068071 50.69199779981481 -1.7049394073476538 -0.05112557099255621 EQDVVTGVS(ph)PLLFR ddPTM_BT-474_Trastuzumab_2h_R1 4 EQDVVTGVSPLLFR 14 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 EQDVVTGVS(1)PLLFR;EQDVVTGVS(1)PLLFR;EQDVVTGVS(1)PLLFR;EQDVVTGVS(1)PLLFR 241.79 1.9642e-17 401394000.0 658440.0 713220.0 656800.0 672730.0 653280.0 698110.0 660480.0 682620.0 824300.0 736720.0 True False 654895.0321995604 736959.0965494063 749271.7309920586 757897.5490234388 736471.3357060762 649851.2988741755 628530.0591213794 733560.5706741246 621162.3100541054 689701.8988622748 0.9495334626160499 1.068518294302345 1.0863704047039011 1.0988769934861116 1.0678110889950452 0.9422205447689264 0.9113068416343294 1.063590765639762 0.9006243292627849 1.0 19.395613413195235 2.746856642964577 24.551413770823284 0.9710647007825197 1.0592831395335385 0.3771432271767067 0.057678035811100814 549.8040229235621 1627098.918706093 0.018020124328596968 0.018820338361542094 558.2858787424973 -2.746856642964577 0.08821843875101876 EQDYLCHVYVR ddPTM_BT-474_Trastuzumab_2h_R1 5 EQDYLCHVYVR 11 0 O15498;O15498-2 O15498 YKT6 Synaptobrevin homolog YKT6 0 ;;;; 213.63 1.8598e-09 2688780000.0 2457520.0 2991490.0 2916160.0 2686510.0 2682270.0 2904150.0 2825060.0 2402883.0 3392690.0 2807300.0 False True 2444288.9853761382 3091059.936256109 3326729.9802828915 3026621.8905459256 3023841.185440142 2703392.946133758 2688401.0550227785 2582198.331052639 2556607.0092168683 2628135.7105495483 0.9300467154586293 1.1761416748185207 1.265813621012465 1.151623136657982 1.150565084330387 1.0286352166983315 1.0229308342911365 0.9825209256460719 0.9727834825859418 1.0 21.32560834417837 2.615793189818724 2.6076003967437016 0.9933759597367916 1.146514202082318 0.4113580793482161 0.0798226588843599 0.27743446641780617 3.6885679797128406 0.029264262877791495 0.027049020053861384 412.85085640392356 -2.615793189818724 0.15313824234552642 EQEAGLLQFLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQEAGLLQFLR 11 0 Q9NZL4;Q9NZL4-3;K7EN20 Q9NZL4 HSPBP1 Hsp70-binding protein 1 0 ;; 143.89 8.6012e-05 65984000.0 73498.0 87322.0 80552.0 79610.0 77635.0 80516.0 90627.0 75175.0 106115.0 85696.0 False True 73102.29493439556 90228.45998273621 91893.02142946469 89688.61783740287 87521.35707130362 74950.11843427698 86243.02578123979 80784.94023091519 79964.38011815042 80226.80791196323 0.9111953577239948 1.124667207023222 1.1454154019228007 1.117938257444102 1.0909240857163987 0.9342278520731297 1.0749901189622109 1.006956930401175 0.9967289263945192 1.0 16.291796775570834 2.793082150349044 24.99290786013447 1.009365981692342 1.0865801508688642 0.225315063130629 0.0684687722890547 458.40315857567083 210133.27814346296 0.020653162466187983 0.02190597967809979 620.9864877881247 -2.793082150349044 0.07721416917652224 EQEEEEQKER ddPTM_BT-474_Trastuzumab_2h_R1 2 EQEEEEQKER 10 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ; 137.59 0.0032082 0.0 984570.0 804160.0 714620.0 695150.0 692750.0 894700.0 929620.0 865560.0 1304500.0 908000.0 False True 979269.1845160107 830925.9794750151 815232.2844116089 783155.9187246641 780967.606249057 832851.4948972577 884650.7291067359 930152.4824246216 983023.45440444 850050.6626220901 1.1520127300357952 0.9775017137354114 0.9590396434689206 0.9213049917623962 0.9187306599350943 0.9797668909853215 1.0407035345139517 1.0942318185547284 1.1564292549013235 1.0 19.697189302199526 2.031821162986722 2.8204541306441553 1.0920596837677838 0.9772918222696092 0.2789178360755291 0.0708004748419116 0.3162772883504453 4.896498011275643 0.03478789936175047 0.020741708253152302 107.60220300293341 -2.031821162986722 -0.11476786149817464 EQEEELRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQEEELRR 8 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 129.38 0.0017527 285030000.0 314940.0 322010.0 290750.0 309630.0 311990.0 334070.0 343440.0 298120.0 374740.0 343660.0 False True 313244.3980331235 332727.9081908441 331685.07275569596 348829.12625292124 351720.0771903908 310976.5272161925 326826.4951317931 320367.2282226865 282390.3482587355 321727.32457787154 0.9736331797248549 1.0341922577679907 1.0309508935583562 1.0842384205650208 1.0932241383347585 0.9665841333937526 1.0158493549175907 0.9957725183679391 0.8777319384645091 1.0 18.29547894495936 1.4999103016658522 3.666295865472505 0.9373248244325272 1.0304466963466303 0.35401459583271677 0.04715610562839453 0.20758299997170415 5.827708445264906 0.03211644137475273 0.012306586251926552 31.616245969596598 -1.4999103016658522 0.09312187191410315 EQEELRR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQEELRR 7 1 Q8WXF1;Q8WXF1-2;A0A0U1RQF9 Q8WXF1 PSPC1 Paraspeckle component 1 0 ;; 141.93 0.0040463 755870000.0 904160.0 1563580.0 1382610.0 1479870.0 1400990.0 1042250.0 1221290.0 1031640.0 913810.0 1298970.0 False True 899292.1030216196 1615622.8150959301 1577269.470138444 1667221.3902655113 1579397.7721816914 970201.7106925992 1162211.5369191333 1108626.2153617733 688613.7699266546 1216068.6224958312 0.7395076942088459 1.328562208751068 1.297023408844554 1.3709928530544144 1.2987735584692348 0.7978182256700116 0.9557121328678287 0.9116477432716374 0.5662622628263853 1.0 20.213793211379574 2.737363834513997 24.99858299920789 0.8559449162803658 1.2278420979683664 0.44641726659412806 0.20000686099640738 98.92975117577191 2066438.6001372538 0.06248453266368293 0.06198763789544558 546.2152667291233 -2.737363834513997 0.37189718168800057 EQEKGEGSDSKES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQEKGEGSDSKESPK 15 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 EQEKGEGSDS(0.045)KES(0.955)PK 100.97 0.0010191 503700000.0 1656100.0 815770.0 736600.0 644000.0 650990.0 1168600.0 1258400.0 1192600.0 2439200.0 1028500.0 True False 1647183.7416100057 842922.4113066214 840306.8773580253 725530.3339691918 733889.7177799701 1087817.432588506 1197526.384445167 1281597.8679000922 1838091.8436054513 962860.2494568491 1.7107194346626986 0.8754358815644484 0.8727194604118756 0.7535157198341759 0.7621975444452697 1.129777071181561 1.2437177514812698 1.3310320668269808 1.908991304441451 1.0 19.876966893433544 2.0572476640918973 1.8337425845864639 1.4536199336586773 0.9725233377111769 0.22648280911482033 0.3307220906643787 0.4674399480358933 2.974639379361173 0.18958659920185034 0.10093425821943999 114.09002205662783 -2.0572476640918973 -0.4810965959475003 EQELQQTLQQEQSVLDQLRGEAEAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQELQQTLQQEQSVLDQLRGEAEAAR 26 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 182.33 1.7156e-17 73289000.0 15930.2 20392.3 15471.800000000001 23469.1 22190.0 19184.7 23941.7 19882.1 27513.2 26134.7 False True 15844.433573211607 21071.045378094343 17650.09495670363 26440.285653658953 25015.764969565607 17858.506844926153 22783.548504824277 21365.80326125812 20732.94051799176 24466.761070957615 0.6475901541385128 0.8612110657796044 0.7213907433646596 1.0806614564542398 1.0224387648620834 0.7299089075637579 0.9312041115188175 0.8732583442202991 0.8473921193681025 1.0 14.578535508504668 4.936261049207464 1.1671569871573775 0.9062417669519166 0.4514808523342038 0.34047588970968157 0.10896048228470194 2.8086152429478326 2.3877081666092788 0.031120790828954078 1.7304368538350707 86349.74297593153 -4.936261049207464 -0.4547609146177128 EQELSEEDKQLQDELEMLVER ddPTM_BT-474_Trastuzumab_2h_R1 4 EQELSEEDKQLQDELEMLVER 21 1 Q13200;C9JPC0 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;;; 222.51 3.5597e-25 265119000.0 276396.0 203309.0 195534.0 165724.0 186591.0 255488.0 226204.0 239813.0 333413.0 245753.0 False True 274907.9146464822 210076.01716211427 223063.48758800415 186704.64140793547 210352.25783849583 237826.71591406135 215261.64833680436 257709.06380573948 251247.83365530695 230068.83314027142 1.1948942014187236 0.9131007198790474 0.969551088443187 0.8115164442725838 0.9143014069630434 1.033719833616316 0.9356401968864717 1.1201389614064587 1.092055061200414 1.0 17.811706032881766 1.7477563471026762 13.285792771585328 1.078815685510093 0.9600138932479118 0.185268537447428 0.09784079352692793 0.17211316838153995 207.97935699517825 0.04525319162946488 0.024890686015100333 55.94436479091034 -1.7477563471026762 -0.11880179226218124 EQEPMPTVDSHEPR ddPTM_BT-474_Trastuzumab_2h_R1 5 EQEPMPTVDSHEPR 14 0 A6NGP5;Q9H910;Q9H910-3;Q9H910-2;H3BU16 A6NGP5;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein 0 ;;;; 207.08 9.942200000000002e-09 3776400000.0 2055016.0 2344401.0 2280191.0 2281093.0 2271127.0 2433790.0 2356175.0 2159038.0 2660553.0 2476585.0 False True 2043952.0221897438 2422432.970064668 2601222.073024537 2569879.1399142663 2560341.5614256277 2265547.825825412 2242197.8137874245 2320156.3789328183 2004895.3627336896 2318527.2249889057 0.8815734403116721 1.044815408659374 1.1219286299461004 1.1084101632347938 1.1042965266184783 0.977149546232416 0.9670784925970207 1.000702667592752 0.864727979522985 1.0 21.14477723678532 2.6182054294090658 6.111697728583182 0.9642596383942671 1.0585418266468776 0.27790302795303523 0.0725718236681573 0.3271651730822837 15.123234638736927 0.024412531937448207 0.02294859483631409 415.1503700837017 -2.6182054294090658 0.09428218825261048 EQFAWR ddPTM_BT-474_Trastuzumab_2h_R1 7 EQFAWR 6 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;S4R435;Q9NQ39 P46783 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 0 ;;;;;; 129.67 0.037443 11061030000.0 4749460.0 5929750.0 5324370.0 5584740.0 5209210.0 5353120.0 5275890.0 4642670.0 6400600.0 5361160.0 False True 4723889.43507461 6127118.144140423 6073995.0157463355 6291767.511383706 5872572.01609332 4983071.414289054 5020675.044842989 4989129.610400578 4823257.893645889 5019006.178879997 0.9412001632818784 1.2207831442653663 1.2101987523557427 1.2535883175158251 1.1700667038038592 0.9928402629305069 1.0003325092465547 0.994047313867606 0.9609985964835395 1.0 22.258970291519233 2.737516382647935 8.282194552404794 0.9904269554990044 1.1708029200780725 0.5238443877033727 0.08043095911535926 0.08821047179913677 75.06266537106384 0.025262827122830307 0.025204259330038156 546.4071613049551 -2.737516382647935 0.18037596457906813 EQFLDGDGWTSR ddPTM_BT-474_Trastuzumab_2h_R1 5 EQFLDGDGWTSR 12 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 ;;;; 319.45 2.8869e-46 29428340000.0 6339100.0 8340560.0 7592040.0 7533710.0 7398060.0 8011210.0 8571960.0 7421420.0 8527030.0 7410480.0 False True 6304970.989940226 8618170.49762501 8660933.240805337 8487476.913551316 8340159.089262942 7457413.909059863 8157301.546732836 7975244.045607159 6425657.712848056 6937536.821968876 0.9088198234817978 1.242252217002168 1.2484161833028455 1.2234136021699076 1.2021787131784911 1.074936840038774 1.1758210091082142 1.149578625709374 0.9262160155316411 1.0 22.725992093004862 1.2480989386035253 22.731263076016052 0.9631080132932067 1.1611109695548478 0.3789055269059608 0.09691362465921763 54.94712859929317 130955.2953642564 0.06491905669769253 0.022895606251177706 17.70512260836929 -1.2480989386035253 0.1980029562616411 EQFNEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQFNEFR 7 0 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ;; 142.79 0.0057359 3586180000.0 2534830.0 3423900.0 3165010.0 3216000.0 3166930.0 3062450.0 3181630.0 2944610.0 3578500.0 2875040.0 False True 2521182.756926089 3537862.441708746 3610615.897239916 3623145.270256094 3570219.763635262 2850750.039731878 3027722.401893103 3164351.750626604 2696626.6244433015 2691552.485754416 0.936702059599416 1.3144318977369367 1.341462191931916 1.3461172648247883 1.3264537037755606 1.0591471111264028 1.1248981462995555 1.1756604292038046 1.0018852088955135 1.0 21.360007127766906 2.733646281118317 24.904599417595016 1.0950706057699557 1.2665284848960252 0.3380551859887969 0.12370025115259932 495.49478030657946 2511032.03283805 0.039796567747385644 0.03858582119964115 541.5596278372454 -2.733646281118317 0.17145787912606947 EQFVEFR ddPTM_BT-474_Trastuzumab_2h_R1 6 EQFVEFR 7 0 O43852;O43852-3;O43852-15;H0Y875;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;;; 183.9 0.0014794 7199860000.0 9016070.0 12016390.0 11141840.0 11001450.0 11032310.0 10857970.0 11326180.0 10129950.0 11823950.0 10046300.0 False True 8967528.480899557 12416348.277088858 12710514.225390634 12394232.441995904 12437209.284875536 10107384.090812089 10778289.40319068 10885898.307843829 8910095.95531268 9405136.532929847 0.9534713769972282 1.3201667231109266 1.3514438818498586 1.3178152596297192 1.322384767231141 1.0746663863329884 1.1460003122180167 1.1574418159406241 0.9473648706870017 1.0 23.165017456608112 1.7360573104213501 0.8803474486697502 0.9838314682439309 1.2545514515718155 0.3707257486675707 0.12148200585738725 0.601320666840853 0.8830258084722623 0.10867354087097318 0.046496052118269876 54.45745113090499 -1.7360573104213501 0.2707199833278846 EQFWEQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQFWEQAK 8 0 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ; 113.62 0.0065447000000000005 409640000.0 427500.0 435710.0 447050.0 412780.0 315680.0 439430.0 466810.0 383290.0 719110.0 508100.0 False True 425198.3874997153 450212.34395774343 509990.7541717423 465037.90567671333 355879.97681804735 409053.23840695445 444228.616912626 411893.0461071828 541894.9760803197 475672.6229937043 0.8938887103144109 0.9464752062548325 1.0721465342319947 0.9776427803432116 0.7481615708263235 0.8599469858755534 0.9338956993505712 0.8659170744679043 1.139218340273268 1.0 18.85960946881896 1.2436997805734757 24.999974007784573 1.069609185234533 0.9124473673397226 0.350775482094569 0.08562634385606939 134.15826626881193 652651.1881454347 0.06494729412961112 0.022103903216154734 17.526684969332997 -1.2436997805734757 -0.15716181789481043 EQFYHSCK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQFYHSCK 8 0 J3QQY1;Q96JB5;J3QS62;Q96JB5-4;J3QL86;Q96JB5-2 J3QQY1 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 0 77.67699999999998 0.030129000000000006 0.0 94971.0 102140.0 104060.0 83294.0 91032.0 94222.0 93649.0 70909.0 134790.0 113020.0 False True 94459.6866882701 105539.6681550662 118710.74349426558 93839.01185967388 102624.38561106335 87708.65491473055 89118.84009607864 76200.58964860617 101572.81059346463 105806.96683870986 0.8927548866632068 0.9974737137673446 1.1219558318425855 0.886888781177522 0.9699208726727987 0.8289497141377463 0.8422776189391168 0.7201849927780739 0.959982254744154 1.0 16.69107509898465 2.9621396503436976 1.7664177115651818 0.839232508554058 0.9924524714325744 0.17917784750857546 0.09645013031572311 0.416499636636093 2.622851980470988 0.03385408803343507 0.03894783618953571 916.5151544236744 -2.9621396503436976 0.15321996287851647 EQGDGAEDEEWDD ddPTM_BT-474_Trastuzumab_2h_R1 2 EQGDGAEDEEWDD 13 0 Q7Z6K5;H0YMP5 Q7Z6K5 ARPIN Arpin 0 ; 193.22 4.7799e-06 324650000.0 757250.0 731110.0 678170.0 692140.0 659730.0 848900.0 827760.0 688830.0 847280.0 800060.0 False True 753173.0501383842 755444.5543846729 773650.4412406883 779764.8530332863 743742.7049739308 790217.5410956551 787718.0864497231 740233.9924078652 638479.1969703288 748999.4858341722 1.0055721858067284 1.0086049038382485 1.0329118455656374 1.0410752848045686 0.9929815961697399 1.0550308191674893 1.0516937612746549 0.9882970634932483 0.8524427707173187 1.0 19.514605202754023 1.4563716427786655 5.983727088229809 0.9232627214664595 1.0259386289684904 0.521765818285785 0.03816274449223456 0.11116174304243492 8.991973597392388 0.021690584088434103 0.008890651110308912 28.60036941987993 -1.4563716427786655 0.10267590750203093 EQGFLSFWR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQGFLSFWR 9 0 P12235;V9GYG0 P12235 SLC25A4 ADP/ATP translocase 1 0 99.815 0.010618 0.0 41136.0 61903.0 65850.0 49743.0 45541.0 65529.0 51394.0 36315.0 64687.0 56508.0 False True 40914.52834663926 63963.403933846326 75121.10762153944 56040.4586997353 51340.376407345124 60999.134468673765 48907.87587585419 39025.00970383354 48745.75561139137 52901.611061067226 0.7734079837267976 1.2091012475973533 1.4200154988630316 1.0593336871167256 0.9704879563701778 1.1530676144864307 0.9245063599177944 0.7376903826007271 0.921441797965689 1.0 15.691024038267207 2.1152114305911747 4.712913890380761 0.8514901064339265 1.1092103659096162 0.24784384522473413 0.16842017741256282 0.25387361013095494 9.384913885903945 0.06703080730284104 0.048500368568397546 130.3801362619635 -2.1152114305911747 0.25772025947568966 EQGIHSLEVLITR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQGIHSLEVLITR 13 0 Q9H078-5;Q9H078-3;Q9H078-2;A0A2R8Y602;A0A2R8YDH5;F5H7A5 Q9H078-5 CLPB Caseinolytic peptidase B protein homolog 0 ; 186.56 7.6996e-06 220320000.0 226670.0 283890.0 281220.0 249420.0 302290.0 354700.0 281330.0 248580.0 328130.0 288520.0 False True 225449.63390540457 293339.107034871 320813.33159194136 280996.546426391 340784.83968679555 330180.42387398856 267720.99311503395 267130.30186366354 247266.7582167335 270106.4065856007 0.8346697020455761 1.0860131410541258 1.1877294420644218 1.0403179620152365 1.2616688511562417 1.222408709396345 0.9911686157291839 0.9889817322011798 0.9154420339095919 1.0 18.043168333608612 2.0855409772518785 9.553658248381936 0.9726928163263409 1.1123811019218548 0.24613783149141233 0.11286119897608417 0.4540076085917392 46.543373663410165 0.04357324155747501 0.0321677624720085 121.77018819927186 -2.0855409772518785 0.13968828559551394 EQGVTFPSGDIQEQLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQGVTFPSGDIQEQLIR 17 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 275.23 2.3923999999999996e-35 440247000.0 393373.0 421117.0 367144.0 406167.0 422150.0 453684.0 415246.0 379624.0 472868.0 406994.0 False True 391255.1234758494 435133.6247743982 418834.6839271441 457587.7005547588 475908.3002209158 422321.8929372613 395158.9645862347 407953.470571612 356336.01750656904 381019.2944749063 1.026864332461298 1.1420251705994797 1.0992479646059716 1.2009567683058509 1.2490398967243346 1.108400280671548 1.0371101157247553 1.0706897957328498 0.9352177768258324 1.0 18.539504530786527 1.841132615842408 1.3733199405377958 0.9827894792547859 1.143526421465904 0.5064500720260404 0.06278009466081483 0.3614145873612817 1.2766299798596517 0.05016443555181152 0.020938973143089568 69.36375823411092 -1.841132615842408 0.16073694221111812 EQHDAQVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQHDAQVR 8 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ;; 161.79 0.00034549 233231000.0 104344.0 125887.0 129029.0 131980.0 118612.0 103676.0 118657.0 108360.0 125057.0 125138.0 False True 103782.22349770837 130077.07269470143 147195.16165982716 148688.6544677856 133716.5351315962 96509.12214705275 112917.10759624155 116446.37344093069 94238.37802794632 117151.58570396806 0.8858798015756875 1.110331302073836 1.2564504421799003 1.26919882111975 1.1413975690391964 0.8237969769433849 0.9638547094153154 0.9939803438527979 0.804414020191571 1.0 16.838016956352487 2.7588186082417177 23.157172832359535 0.9271595190320148 1.145875310545909 0.46264917267254313 0.11540546595992304 296.80684146676816 339282.5857016329 0.036719257304831464 0.0388863739927197 573.8767210781374 -2.7588186082417177 0.2187157915138942 EQHGVAASCLEDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQHGVAASCLEDLR 14 0 O00273;O00273-2;K7ERT1 O00273 DFFA DNA fragmentation factor subunit alpha 0 ;; 188.9 7.8045e-07 872020000.0 310269.0 321559.0 273378.0 301025.0 324030.0 333597.0 316856.0 272161.0 343271.0 351816.0 False True 308598.54617812665 332261.8969284795 311867.2461558271 339134.7341352118 365293.2998237205 310536.22459286964 301528.4647725353 292471.0358255553 258676.461645739 329362.80167516856 0.9369562822776796 1.0088021332055892 0.9468805966236699 1.029669204932501 1.1090909415568673 0.9428393947751681 0.9154903445044027 0.887990490541195 0.7853845678081661 1.0 18.329318100329353 2.3572996625647433 3.081162857352906 0.8869745196390342 1.0056211049284889 0.36837203120396567 0.06629478196650529 0.2542626000622296 4.854755516825463 0.025018916226303655 0.01999059899137583 227.66677864199244 -2.3572996625647433 0.11864658528945471 EQHLAQLQQLQQMHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQHLAQLQQLQQMHQK 16 0 P49750;P49750-1;P49750-3;F8VU51 P49750 YLPM1 YLP motif-containing protein 1 0 171.08 2.9194000000000005e-09 463560000.0 325030.0 369930.0 356110.0 452780.0 445630.0 333830.0 374200.0 291580.0 360840.0 380960.0 False True 323280.07459422795 382242.89642259304 406247.19263639156 510101.9015754212 502378.33904405264 310753.1178512926 356098.516417182 313339.1802132394 271915.81700827804 356646.8066437347 0.9064432053562791 1.0717687339464308 1.1390742467580937 1.4302718882465069 1.4086158341686585 0.8713189409311417 0.9984626520794833 0.8785699868224066 0.7624232488359359 1.0 18.44413653040422 2.7128766023196156 24.80218317721944 0.9014690439859048 1.1949798229181061 0.4627730042971533 0.15570669847679358 676.8810612785139 653640.368500307 0.054792552933550884 0.051675478399837015 516.2696588429872 -2.7128766023196156 0.29351077893220134 EQHLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQHLTK 6 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 72.138 0.086386 1021640000.0 2324900.0 2635900.0 2478000.0 2404600.0 2371000.0 2141400.0 2772300.0 2378000.0 3241500.0 2826500.0 False True 2312382.9967206754 2723634.3380647996 2826880.860837882 2709022.113450805 2672932.7959819757 1993370.0583133905 2638193.25778555 2555458.435239328 2442675.7588746576 2646110.3501116037 0.8738800317315365 1.0292973374862942 1.0683155601272085 1.0237751850887655 1.0101365560469693 0.7533208349490478 0.9970080263940164 0.9657414457910071 0.9231193849385888 1.0 21.335441796564027 EQHTEDTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQHTEDTVK 9 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ; 129.7 0.000995 510500000.0 1314900.0 1080890.0 995950.0 841440.0 946070.0 1035540.0 1279490.0 1118750.0 1623120.0 1284720.0 False True 1307820.7244991234 1116866.7702381972 1136171.1030474144 947966.217725213 1066546.4067037837 963955.5571989575 1217596.1805735435 1202236.8058973902 1223123.824693704 1202728.0696958709 1.087378566652915 0.9286112117767525 0.9446616668177651 0.7881800064456146 0.8867726908323318 0.8014742330265138 1.0123619887589654 0.9995915420859806 1.016957910530009 1.0 20.197879063170035 2.18363096352051 24.999132718915906 1.0065642066616587 0.9027024477465684 0.2880443217459955 0.07770893725272386 119.5751415845923 54419.10257684261 0.030119138892343716 0.022244470180834298 152.6268578805858 -2.18363096352051 -0.10386175891509031 EQHVQDIIPINSHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQHVQDIIPINSHFR 15 0 Q01968-2;Q01968;A0A2R8YF88 Q01968-2 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 0 211.78 6.9874e-10 136850000.0 83215.0 94434.0 84322.0 94528.0 97175.0 101320.0 85540.0 77365.0 112590.0 87092.0 False True 82766.9796860557 97577.17860344144 96193.80466003725 106495.23510782568 109549.66024864973 94315.98688162534 81402.10340546705 83138.3691515099 84843.70312870521 81533.71399678754 1.015125837261832 1.196770928493286 1.179804033750104 1.3061496881157852 1.343611800303443 1.1567728520908716 0.9983858138570054 1.0196808789402823 1.0405965700525808 1.0 16.315109113230942 2.3493388652267866 4.463483215349593 1.0163512871275868 1.2146743798275736 0.5512948073361907 0.08250644948831469 0.16847134516579962 5.813885600077354 0.03132380419144241 0.025726947008509922 223.53156834317036 -2.3493388652267866 0.19832309269998682 EQIHNLEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQIHNLEDR 9 0 Q13439-5;Q13439-3;Q13439-4;Q13439;H0Y6I0 Q13439-5 GOLGA4 Golgin subfamily A member 4 0 110.39 0.0022952 216010000.0 159660.0 127940.0 114260.0 109100.0 128560.0 141560.0 111680.0 91581.0 153690.0 113630.0 False True 158800.4082998935 132198.4055586368 130346.81483427639 122912.04881372512 144931.35396518052 131774.29039639645 106277.61174096973 98415.23925889528 115815.15884048927 106378.03611646265 1.4927931939450247 1.2427227497780275 1.2253169882885666 1.1554269405684556 1.3624180259025436 1.2387358820210779 0.9990559670101169 0.9251462317949759 1.0887130752601493 1.0 16.698840782636243 2.2675979418409797 4.4668349152957285 0.9870081540992413 1.282312860524936 0.6911156450516427 0.09284855784520539 0.11233941805201011 5.149741270459916 0.034269937494192236 0.027114266613220656 185.18164676993706 -2.2675979418409797 0.29530470642569484 EQILEEFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 EQILEEFSK 9 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;; 134.59 0.00056894 51556000.0 416000.0 476180.0 426690.0 399920.0 423370.0 479060.0 454650.0 431510.0 575180.0 475900.0 False True 413760.30222194514 492029.36344311154 486764.24314403394 450549.83099527884 477283.65998940996 445943.7097859396 432656.842568337 463711.4673633815 433434.5960171298 445527.654561511 0.9286972379507366 1.1043744611709179 1.0925567429099503 1.0112724235686574 1.0712772935703694 1.0009338482587307 0.9711110817445406 1.0408141057366396 0.9728567723674005 1.0 18.765155459181738 2.7147132975815786 22.63773838434556 1.0008804966448 1.0462632226772728 0.16325328096654979 0.04945588518704585 427.1787568572368 405509.93191804923 0.01551622065767728 0.014641074816167375 518.4576626230756 -2.7147132975815786 0.04538272603247284 EQIS(ph)DIDDAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 EQIS(1)DIDDAVR;EQIS(1)DIDDAVR 201.65 4.4785000000000014e-08 691360000.0 838090.0 844500.0 757290.0 811460.0 689020.0 875470.0 733790.0 725900.0 801880.0 740210.0 True False 833577.8165605523 872608.6719889707 863909.8495173211 914190.752799131 776762.6128584997 814950.8195347079 698293.7743499835 780070.3440455111 604267.418641497 692969.164074335 1.2029075170668548 1.2592316039842801 1.2466786320446566 1.3192372766258693 1.1209194479758644 1.1760275374205365 1.007683762210056 1.1256927212447114 0.8719975577104858 1.0 19.402431630801008 2.2828800892598147 0.8118778221069672 0.9727335177172677 1.2564694993381986 0.7122088234104562 0.07035522288711565 0.34154373071122335 0.43369213323666933 0.05312525342753432 0.03288916998838719 191.81390603731407 -2.2828800892598147 0.28373598162093094 EQISDIDDAVR ddPTM_BT-474_Trastuzumab_2h_R1 4 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ;;; 248.09 8.056100000000001e-16 7927680000.0 2890590.0 3174020.0 3018770.0 3166420.0 2622850.0 3136410.0 3215260.0 2634200.0 2693930.0 2862640.0 False True 2875027.38461474 3279665.3369643926 3443786.576380786 3567288.447339647 2956854.4006500742 2919597.359014989 3059725.590314024 2830777.380196565 2030047.048312574 2679943.86437059 1.072793883050221 1.223781356231748 1.2850219074232705 1.3311056603707847 1.1033269912705874 1.0894248188667504 1.1417125675625408 1.0562823415188958 0.7574961085199259 1.0 21.353771350812313 1.5200643228809976 2.872720300370231 0.8798824395945651 1.1844330158367633 0.5906242278276284 0.09796143568958733 0.16141911267568454 2.8182255487553887 0.07397755534435631 0.026847032882910196 33.11801685831088 -1.5200643228809976 0.30455057624219817 EQIVPKPEEEVAQKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQIVPKPEEEVAQKK 15 2 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 81.428 0.0078919 232100000.0 279830.0 258460.0 215040.0 246170.0 248610.0 336100.0 331520.0 290670.0 453860.0 356250.0 False True 278323.4263720359 267062.68485763087 245315.7628388128 277335.09675962134 280269.0098730829 312866.19809429796 315483.11107061506 312361.2713923529 342012.284412418 333513.8199990298 0.8345184207744241 0.8007544780555353 0.7355490181472133 0.8315550364912259 0.840352012620941 0.9380906557191786 0.9459371460874779 0.9365766953623138 1.025481595975282 1.0 18.347387018848075 2.7202006048221277 1.0872879102417201 0.9804006949438391 0.7890336173408893 0.8619844518727651 0.032985039373003636 0.18038931410442818 0.4455293980066083 0.017740089425536412 0.016144370681446668 525.0499298873563 -2.7202006048221277 -0.1913670776029498 EQIVVDLSHPGVSEDDQVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EQIVVDLSHPGVSEDDQVSR 20 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 ;;; 258.4 2.9680999999999997e-36 3466320000.0 2873040.0 3110647.0 2865933.0 3101006.0 3182354.0 3405674.0 3064272.0 2842555.0 3585690.0 3266212.0 False True 2857571.87186475 3214183.0049691815 3269431.4552638014 3493593.041646691 3587607.918610053 3170247.772474265 2916041.456704196 3054680.8883018214 2702044.745284369 3057759.5538152177 0.9345312545256574 1.0511562300439194 1.069224508246398 1.1425336034966114 1.173279931096523 1.036787790759641 0.9536529623677579 0.9989931629811916 0.88366815563146 1.0 21.54404353450659 2.380296384240753 4.476054820415559 0.9636191034700404 1.0788324697131975 0.39922900788763194 0.06628175790627536 0.23067815206871886 8.199486546255075 0.02488346385424637 0.020588053815917728 240.04705611289023 -2.380296384240753 0.11521336624315703 EQIYDVYR ddPTM_BT-474_Trastuzumab_2h_R1 6 EQIYDVYR 8 0 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ;;;;; 149.82 0.0011612 2811840000.0 3183390.0 4146740.0 4483520.0 3444710.0 2274380.0 2852460.0 3457760.0 2582690.0 5253120.0 3163120.0 False True 3166250.9819478784 4284761.734142737 5114760.644545551 3880809.932805924 2564008.8116935827 2655276.154168583 3290494.9388740635 2775423.442434085 3958558.9642016524 2961246.973516721 1.06922894654332 1.446945078361443 1.7272320378166088 1.310532342460159 0.8658544304559016 0.8966750081690171 1.111185581041332 0.9372482157872988 1.3367878463377685 1.0 21.497773388312805 3.400060102007275 5.88552328738173 1.0178552304692678 1.4336586545140908 0.4631841193544548 0.19366416883352616 0.1672135089156552 9.704510428432798 0.05394807544692062 0.07359853458838579 2512.2340754923644 -3.400060102007275 0.41580342404482296 EQKVPEILQLSDALR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQKVPEILQLSDALR 15 1 P49589-3;P49589;B4DKY1;P49589-2 P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic 0 83.41799999999998 0.0079544 79516000.0 104480.0 102950.0 116350.0 106930.0 85326.0 74109.0 111370.0 90531.0 142740.0 113080.0 False True 103917.49128881915 106376.62851541072 132731.06866767057 120467.32703622025 96191.76033317507 68986.01926382132 105982.60762528461 97286.88292710316 107563.63961800677 105863.13758734125 0.9816211162557235 1.004850516806625 1.2537987414000669 1.1379534914769551 0.9086426354387342 0.65165288726593 1.0011285329404185 0.9189873372762796 1.0160632120813775 1.0 16.69184079296506 3.231096136929631 24.89191821439587 0.9063744136440278 1.0995229228698467 0.34644864883750337 0.11956782994900604 176.37288305895888 588152.8922136367 0.03576676141016668 0.04356085319581437 1702.5353458011105 -3.231096136929631 0.19314850922581883 EQLDPDELETITMHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQLDPDELETITMHK 15 0 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ; 206.13 4.0502e-09 696050000.0 447070.0 512830.0 451800.0 437620.0 477670.0 527510.0 582730.0 504130.0 686810.0 528850.0 False True 444663.0247941465 529899.236537718 515409.5128840018 493022.64712980995 538498.4431280938 491044.47532497207 554541.1236552232 541750.7405202698 517554.8782824941 495098.3402287355 0.8981307119484829 1.070290876541627 1.0410245218068848 0.995807513517483 1.0876595604810702 0.9918120006181185 1.1200625786768443 1.0942285532001197 1.0453577324524732 1.0 18.91735558724368 4.741963940054682 24.919541690214228 1.0550205562338828 0.8981306502565835 0.5325847233581802 0.042289770484756496 241.75335878040013 1770065.232379037 0.010135792554320969 0.0742454045593446 55203.16015908087 -4.741963940054682 -0.15688990597729935 EQLDSSNSTIAILQTEKDKLELEITDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQLDSSNSTIAILQTEKDKLELEITDSK 28 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 78.286 0.0039681 52434000.0 76725.0 50356.0 43657.0 52985.0 48588.0 66549.0 72006.0 69970.0 122790.0 77769.0 False True 76311.92112494883 52032.069019155206 49803.52612655345 59692.89556732558 54775.393796361146 61948.62426949548 68522.79469036772 75191.51670046078 92530.04980170276 72805.71583860929 1.0481583794068017 0.7146701109909601 0.6840606613490964 0.8198929833977415 0.7523501852214938 0.8508758351723226 0.941173284282574 1.0327694169938548 1.2709173824595998 1.0 16.151764097669993 1.888829468638087 1.6211161381815447 1.131089969150451 0.7953801793704375 0.5720459015867171 0.11314547253324178 0.24950252829172526 1.2283988046410512 0.0758439021668508 0.033791627597749466 77.4157755028502 -1.888829468638087 -0.33570978978001353 EQLDSSNSTIAILQTEKDKLELEITDSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQLDSSNSTIAILQTEKDKLELEITDSKK 29 3 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 151.41 1.4129e-08 230420000.0 127070.0 89586.0 78997.0 79318.0 78028.0 136060.0 143920.0 122410.0 266930.0 146580.0 False True 126385.86923880408 92567.81585411931 90119.0909457668 89359.65066734218 87964.40329181014 126654.49245078911 136958.0397722097 131544.8557853851 201148.6781787484 137225.1389065483 0.9210110497674492 0.6745689353403309 0.6567243557839559 0.6511900908199991 0.641022512294302 0.9229685862226898 0.9980535699474097 0.9586061040533431 1.4658296561516522 1.0 17.066185274122297 2.1062263810153015 1.190906689910219 1.1719154148922042 0.7032653887265027 0.6158325840281436 0.1495211526352701 0.31319452791901964 0.8330669098607822 0.10411581997261196 0.05263504703968661 127.71043407278285 -2.1062263810153015 -0.4686500261657015 EQLEEEEEAKHNLEK ddPTM_BT-474_Trastuzumab_2h_R1 5 EQLEEEEEAKHNLEK 15 1 P35579 P35579 MYH9 Myosin-9 0 ;;;; 294.39 3.1345e-44 7433180000.0 3443275.0 2779329.0 2646606.0 2323103.0 2376968.0 3553316.0 3218701.0 3001982.0 4807187.0 3351541.0 False True 3424736.7899838183 2871837.285625141 3019225.1200882597 2617207.6016068817 2679660.785406873 3307683.6285261507 3063000.1359981317 3226005.1405957183 3622520.1768555897 3137642.783981386 1.0914999016038835 0.9152849713443282 0.9622590358285257 0.8341317931309825 0.8540362845277832 1.0541938188161109 0.9762105972151044 1.0281620192921415 1.1545355626044014 1.0 21.581249682269572 2.1100538684832295 1.3743001721551054 1.0643132999249518 0.9336353375316916 0.2803421671198818 0.08149513473551172 0.5530050114226013 1.977074270992452 0.054113651175355416 0.027984397992830687 128.84093519122743 -2.1100538684832295 -0.13067796239326024 EQLELFQNIRPLFINKPLIVVANK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQLELFQNIRPLFINKPLIVVANK 24 2 Q9BZE4-2;Q9BZE4;Q9BZE4-3 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 0 107.74 0.0013804 113590000.0 64474.0 79071.0 69126.0 68481.0 66603.0 84999.0 92095.0 79007.0 139650.0 108540.0 False True 64126.87914773481 81702.83043557116 78858.33994603688 77150.68757848482 75084.4972630905 79123.219196124 87640.01301293529 84902.90352941686 105235.12871412805 101612.88427423086 0.6310900394744278 0.8040597510751999 0.7760663473857856 0.759260876507275 0.7389269362776272 0.7786730960474245 0.8624891778134566 0.835552539777166 1.0356474916125946 1.0 16.632723818476283 1.540615848814593 1.0468522000925502 1.0230960008810004 0.7489475426318272 0.775302283949507 0.05420155045758363 0.21459476473966788 0.4554533192828309 0.04648125554208881 0.01709890482471035 34.722888744960116 -1.540615848814593 -0.2741484582491732 EQLEWER ddPTM_BT-474_Trastuzumab_2h_R1 2 EQLEWER 7 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;A0A0U1RQP7;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 0 ; 134.48 0.0073760000000000015 1765110000.0 1492900.0 1775320.0 1642140.0 1638600.0 1461430.0 1830200.0 1791590.0 1536220.0 2056500.0 1816250.0 False True 1484862.3922767835 1834410.4529963958 1873339.0382632473 1846046.5919905591 1647534.4479257464 1703682.581827388 1704923.9471615676 1650860.537167096 1549703.130688179 1700335.370030145 0.8732761891852303 1.0788521401891875 1.1017467914168222 1.0856955777834763 0.9689467601303486 1.0019685597654677 1.0026986306421075 0.9709028973136212 0.9114102770565224 1.0 20.697387897428815 2.3912909134664706 1.1130480902843605 0.9610876001090526 1.0354910774986419 0.12850499879633825 0.06577372710904472 0.9222249417215039 2.266088987516974 0.04166911551420811 0.02718645239212467 246.20162409065418 -2.3912909134664706 0.0744034773895893 EQLFAVSHDK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQLFAVSHDK 10 0 Q5JRX3-3;Q5JRX3;Q5JRX3-2;A0A0A0MRX9 Q5JRX3-3 PITRM1 Presequence protease, mitochondrial 0 88.021 0.013866 0.0 254280.0 272960.0 275380.0 239540.0 286020.0 440640.0 270400.0 203400.0 338810.0 289800.0 False True 252910.98473316408 282045.30859219556 314151.11035413115 269865.7394394103 322442.9516266407 410179.5939549878 257319.71897168882 218578.7408442719 255314.8153214017 271304.71588973724 0.9322026854702788 1.0395886693942449 1.157927201242633 0.9946960875869486 1.1884900362649313 1.5118778625348026 0.9484528056499683 0.8056577274281732 0.9410629464515681 1.0 18.049554599578176 2.0203778261168592 24.99547639456966 0.8897486180780655 1.1381408556903012 0.31364798179597797 0.15400167532199954 260.7800888834051 319871.9473819046 0.0600123900002408 0.04431753007023785 104.80399219575999 -2.0203778261168592 0.24839223761223572 EQLNRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQLNRPR 7 1 P82930;C9JJ19 P82930 MRPS34 28S ribosomal protein S34, mitochondrial 0 69.905 0.053328 48252000.0 73281.0 87515.0 77310.0 73122.0 71696.0 72401.0 78622.0 66110.0 92028.0 94248.0 False True 72886.46323828447 90427.88387106538 88194.57600943366 82379.23770263248 80826.06062451455 67396.08928362183 74818.75349479329 71043.46389977797 69348.93251202138 88233.01195022765 0.8260679492546374 1.0248758585060642 0.9995643814039163 0.9336555092225879 0.9160523803733304 0.7638421016573711 0.8479678052586331 0.8051800831626792 0.785974897367679 1.0 16.429030913634076 2.9390466231430774 4.771311471856841 0.8274979108674124 0.9528010991145914 0.2868498866641167 0.0777037567708458 0.2217312049441483 10.230033191643471 0.02253583838834076 0.024503865838099104 869.0537204581597 -2.9390466231430774 0.125303188247179 EQLQLLEEQHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQLQLLEEQHR 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 198.57 5.3203e-08 2426450000.0 1111330.0 1287680.0 1238240.0 1239670.0 1111700.0 1265650.0 1232400.0 1099890.0 1385640.0 1256280.0 False True 1105346.722760371 1330539.6503810012 1412573.4290249816 1396612.0948937726 1253268.405437859 1178158.5945196315 1172784.103774813 1181969.3769282505 1044167.5886247378 1176103.134844581 0.9398382590880856 1.1313120516057706 1.2010625490014102 1.1874911761699636 1.0656109726324938 1.0017476865881514 0.9971779421621841 1.0049878636574205 0.8878197478512138 1.0 20.165583147869786 2.8302132585849944 2.7835235574248403 0.9801948421448416 1.1223727936337176 0.432692559015991 0.07378788213654808 0.2675323541189483 4.043152495191309 0.02514213324199483 0.02653059707356695 676.4150447829288 -2.8302132585849944 0.1421779514888759 EQLRQEQALLEEIER ddPTM_BT-474_Trastuzumab_2h_R1 4 EQLRQEQALLEEIER 15 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 272.16 1.8696e-33 303587000.0 162869.0 236081.0 226660.0 247056.0 227272.0 225002.0 241807.0 187378.0 256670.0 235521.0 False True 161992.13140044693 243938.8133710218 258571.7578359627 278333.2642687778 256213.74205331755 209448.14133773666 230109.87161755623 201361.09784620456 193417.11770179207 220489.8481403275 0.734692017644955 1.1063494098638527 1.1727150252804317 1.2623404960197384 1.1620205837787785 0.9499219265842865 1.0436302331303082 0.9132443037379719 0.8772155241301387 1.0 17.75035270675127 2.7240506132557276 22.62980499606497 0.9555884093099688 1.1030976359978224 0.18182791747038551 0.13678496429720807 376.3647966920878 586976.1845729804 0.04577206067667755 0.04339136902665685 529.7251751699322 -2.7240506132557276 0.1475092266878536 EQMDNAVYTFETLLHQELGK ddPTM_BT-474_Trastuzumab_2h_R1 5 EQMDNAVYTFETLLHQELGK 20 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ;;;; 236.96 1.0515999999999999e-29 515701000.0 335013.0 395554.0 343302.0 333799.0 333183.0 421642.0 420933.0 401101.0 530514.0 420784.0 False True 333209.32723144355 408719.77577255806 391635.9375655232 376057.9191748177 375611.8801196389 392494.88097850693 400570.8626697849 431033.19336960895 399775.9332233936 393929.20486869296 0.8458609392581365 1.0375462664891657 0.9941784785823784 0.9546332552321622 0.9535009729599518 0.9963589297963726 1.0168600289569945 1.0941894839030373 1.0148420789381418 1.0 18.587576852945897 2.290664704024605 2.4477881226137344 1.0473778962686495 0.9642827390990509 0.3019706703636551 0.051479006673699666 0.3211017983888756 3.9485458505570596 0.021149595016981555 0.015440254880789683 195.28311951550603 -2.290664704024605 -0.08309515716959859 EQMEAEIAHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQMEAEIAHLK 11 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 0 66.98899999999999 0.061202 324620000.0 321540.0 390700.0 384930.0 424520.0 376010.0 355470.0 374310.0 295090.0 340500.0 402630.0 False True 319808.8643664524 403704.21331686224 439124.7981284615 478264.18847298424 423892.6447141216 330897.1955863733 356203.1952969407 317111.114236658 256588.33746624124 376933.8086911142 0.8484483402456637 1.0710215003496426 1.1649918049359986 1.268828047379818 1.1245811199214788 0.8778655242823641 0.9450019793497441 0.8412912477599506 0.6807251871548291 1.0 18.523951676293695 2.723019295653689 7.669198846645697 0.86377605073068 1.107820575449253 0.4474321940001169 0.12548034184608758 0.16473863875248518 58.68082403100676 0.04169847071424707 0.04050309053790679 528.4687310582915 -2.723019295653689 0.24404452471857296 EQMMNSSISSGS(ph)GSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQMMNSSISSGSGSLR 16 0 A0A590UJD9;A0A0C4DFT3;A0A590UJ18;A0A590UK02;E7EQD7;A0A590UK70;A0A590UJ08;Q12959-4;Q12959-2;A0A590UJC5;A0A590UJL2;A0A590UJ25;Q12959;Q12959-3;Q12959-5;Q12959-7;Q12959-6;A0A590UKA8;A0A590UJR5;A0A590UJ68;A0A590UJS9;A0A590UK48;A0A590UJ81;C9JUA9;Q12959-8;A0A590UJX2;A0A590UJ64;A0A590UK81;A0A590UJ29;Q12959-9;A0A590UJR4 A0A590UJD9;A0A590UJ08;Q12959 DLG1 Disks large homolog 1 1 EQMMNSSIS(0.014)S(0.035)GS(0.475)GS(0.475)LR;EQMMNSSIS(0.005)S(0.012)GS(0.733)GS(0.25)LR 104.95 0.0013864 625720000.0 399920.0 445340.0 404250.0 477160.0 437460.0 477870.0 453330.0 414640.0 484440.0 486610.0 True False 397766.87515528925 460162.8726862849 461164.8861960102 537568.4070756823 493167.9379714367 444835.97168498096 431400.6960112264 445582.54229925777 365056.25316342455 455554.1331922192 0.8731495253220612 1.0101167768180934 1.0123163255362753 1.1800318950214803 1.0825671463359252 0.9764722549389849 0.9469800943046184 0.9781110735993389 0.8013454967587585 1.0 18.797262973135116 2.48028665093281 3.7302750922262526 0.9364713168061644 1.0375297433404944 0.225829741877832 0.08663552293328117 0.3616318154212871 11.08078199797134 0.03184132447534322 0.027718315738461414 302.1945661759586 -2.48028665093281 0.10105842653433006 EQMMNSSISSGSGS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQMMNSSISSGSGSLR 16 0 A0A590UJD9;A0A0C4DFT3;A0A590UJ18;A0A590UK02;E7EQD7;A0A590UK70;A0A590UJ08;Q12959-4;Q12959-2;A0A590UJC5;A0A590UJL2;A0A590UJ25;Q12959;Q12959-3;Q12959-5;Q12959-7;Q12959-6;A0A590UKA8;A0A590UJR5;A0A590UJ68;A0A590UJS9;A0A590UK48;A0A590UJ81;C9JUA9;Q12959-8;A0A590UJX2;A0A590UJ64;A0A590UK81;A0A590UJ29;Q12959-9;A0A590UJR4 A0A590UJD9;A0A590UJ08;Q12959 DLG1 Disks large homolog 1 1 EQMMNSSISSGS(0.001)GS(0.999)LR;EQMMNSSISSGS(0.006)GS(0.994)LR;EQMMNSSISSGS(0.007)GS(0.993)LR 221.79 1.0744e-14 726310000.0 485880.0 406390.0 375720.0 428700.0 376580.0 458570.0 400420.0 408850.0 609280.0 503230.0 True False 483264.07606634306 419916.44548205775 428618.11018321617 482973.37604439823 424535.230835467 426870.1352576683 381050.1548470551 439360.46309823333 459131.1079337199 471113.43056312075 1.0257913375313854 0.8913276893425276 0.9097981131017427 1.025174288635969 0.9011316665882801 0.9060878072345157 0.8088288936946391 0.9326001650453201 0.9745659498285192 1.0 18.845714935567287 4.749600436703507 23.569828751454093 0.9216317461764453 1.0257914742241727 0.1955641192880715 0.0585061547052271 1142.003550344102 2438051.082929927 0.013987447393865158 0.19952214290515086 56182.41930745676 -4.749600436703507 0.10415972804772744 EQMQPTHPIR ddPTM_BT-474_Trastuzumab_2h_R1 6 EQMQPTHPIR 10 0 Q04917;A2IDB2 Q04917 YWHAH 14-3-3 protein eta 0 ;;;;; 136.49 0.00011634 2899572000.0 899047.0 1156022.0 1128472.0 1167349.0 1217779.0 1143529.0 1194036.0 1056269.0 1210687.0 1179111.0 False True 894206.630845513 1194499.4934399428 1287351.0487455404 1315135.263709011 1372855.9373083678 1064479.5318077188 1136275.917019526 1135093.1564053008 912329.4112246453 1103859.1264922859 0.8100731419298203 1.0821122594109298 1.1662276624340042 1.1913977355861465 1.2436876267634516 0.9643255251150544 1.0293667821819352 1.0282953043222705 0.8264907988066728 1.0 20.074124637745587 1.8587732888362547 1.3103922676643491 0.9334330017582376 1.0960495652796545 0.18434201419672958 0.12376921931638564 0.7266246558375976 2.3232133123196217 0.09861521103732811 0.041542703736994674 72.23926005099722 -1.8587732888362547 0.16261656352141685 EQMYNILMWIHDNYRDPESETDNDSQEIFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQMYNILMWIHDNYRDPESETDNDSQEIFK 30 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 109.48 0.00014623 194330000.0 115820.0 118080.0 90367.0 81248.0 112680.0 116440.0 119030.0 132610.0 137460.0 117490.0 False True 115196.4379888116 122010.22141913275 103089.8881159553 91533.98846945478 127029.13009331466 108390.77687027697 113272.06416124309 142506.0315799356 103584.8248696315 109991.68761175046 1.0473194883183619 1.1092676552959657 0.9372516265032937 0.8321900541480206 1.1548975459100428 0.9854451661190581 1.0298238586998658 1.2956072833699446 0.9417513915712071 1.0 16.747034973691854 1.9720706942222177 24.600994724882167 1.1246525097749978 1.0103329069481572 0.02022629715809221 0.12164159548355918 1100.7624449805953 969583.672317892 0.049553267220520364 0.032072902489459064 93.77146351872197 -1.9720706942222177 -0.1143196028268405 EQNFYGSQESIIALCTHLQQLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQNFYGSQESIIALCTHLQQLIR 23 0 Q9H993;F5GZY1 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 ;; 239.32 3.2576e-37 1809255000.0 862204.0 961380.0 925076.0 874306.0 871448.0 970099.0 1012083.0 826659.0 1146757.0 1095377.0 False True 857561.9894638696 993378.9521335182 1055318.6598952648 984993.0499553875 982421.7373230301 903038.339497412 963124.6787574845 888348.4922693458 864154.1031065339 1025469.1020605685 0.836263118743112 0.968706858292884 1.0291081981648367 0.9605292328907338 0.9580217827616264 0.880609993692501 0.9392039963195287 0.866284991409596 0.842691507106465 1.0 19.967852592613866 2.7487538136612 23.3105854180714 0.897827219356839 0.9564573344205042 0.11052224987256021 0.060312920602698425 487.91145796902606 1115792.1816107302 0.01833226595218206 0.01921094948602286 560.730027700408 -2.7487538136612 0.05863011506366522 EQPEMEDANS(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQPEMEDANSEK 12 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 EQPEMEDANS(1)EK;EQPEMEDANS(1)EK 209.66 5.5121e-08 536250000.0 980160.0 854160.0 714820.0 646640.0 713640.0 927840.0 945540.0 913200.0 1150700.0 890960.0 True False 974882.9274660131 882590.1992493758 815460.442673178 728504.5576985067 804517.823924327 863700.6047004275 899800.6178864294 981347.6211356397 867125.4035900269 834098.1700107666 1.1687867957478306 1.0581370766440876 0.9776552353095943 0.8734038556745702 0.9645361335751909 1.0354903484433717 1.0787706414399816 1.1765373146939915 1.0395963386166331 1.0 19.669857667522535 2.3098059027914872 3.3702285197817554 1.098706474469213 1.0022239639142188 0.0895389465476476 0.08315272142370138 0.3992175692068367 9.13762408669722 0.03378097771934394 0.02657487252588738 204.08256441269359 -2.3098059027914872 -0.09648251055499424 EQPFGEGVPLDGDDPEHIQWIFQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EQPFGEGVPLDGDDPEHIQWIFQK 24 0 Q8TBC4;F8W8D4;Q8TBC4-2 Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit 0 ;;; 245.09 8.885199999999999e-38 1098510000.0 821230.0 848470.0 809730.0 797930.0 828270.0 953000.0 891040.0 818290.0 1010480.0 943200.0 False True 816808.588927231 876710.8110390548 923732.9457006705 898947.8561863947 933745.274959086 887121.3531206972 847936.9910966476 879354.9549924266 761460.7437382888 883004.1684858524 0.9250336726358478 0.9928727885196859 1.0461252377603816 1.0180561862215012 1.0574641754639085 1.004662701243987 0.9602865098028507 0.9958672748966934 0.8623523771626328 1.0 19.75206072300101 1.3973752535674124 12.070394530563238 0.9302190749986567 1.0021552902907696 0.2521279268302369 0.047449438686554456 0.7741160827611817 113.63468226992022 0.03094712439915432 0.011375011733739322 24.967511211607107 -1.3973752535674124 0.0719362152921128 EQPGEEYS(ph)EEEESVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQPGEEYSEEEESVLK 16 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 EQPGEEYS(1)EEEESVLK 150.68 2.1428e-08 0.0 63292.0 58985.0 48662.0 56441.0 51776.0 71866.0 66744.0 65986.0 78713.0 76269.0 True False 62951.24290440225 60948.28006781452 55513.18662231359 63586.424812973884 58369.36669960475 66898.0725743673 63515.33773315984 70910.2103901187 59315.23585016233 71401.44712282388 0.8816521995151485 0.853600067278357 0.7774798531298741 0.8905481243761532 0.8174815644730349 0.9369288056485755 0.8895525271904019 0.9931200731567783 0.8307287630757539 1.0 16.12366569380053 2.730120557607282 24.667031156791293 0.9315621983559252 0.8435507483250049 0.386739308436155 0.0540745125741262 525.2394178906904 1535068.8434241472 0.01644187398671052 0.015730310850781387 537.1808939483035 -2.730120557607282 -0.08801145003092037 EQPGSYSDAPEYLWS(ph)GTL ddPTM_BT-474_Trastuzumab_2h_R1 1 EQPGSYSDAPEYLWSGTL 18 0 Q96A59-2 Q96A59-2 1 EQPGSYSDAPEYLWS(0.5)GT(0.5)L 149.09 6.7834e-08 26077000.0 42829.0 55089.0 75710.0 57269.0 72158.0 106500.0 56549.0 44446.0 60456.0 66286.0 True False 42598.41342274923 56922.60406299629 86369.30991688311 64519.24952807715 81346.89358602588 99137.90567403371 53813.508831841835 47762.7862122149 45557.42886889603 62055.57072970018 0.6864559123676123 0.9172843532603718 1.3918059072099747 1.0397011705702972 1.3108717336652058 1.5975665763490545 0.8671825623237135 0.7696776558587888 0.7341392292939135 1.0 15.921273106478282 2.029076356722456 24.99965125870274 0.8113678660757154 1.1648113181270665 0.27946233845292234 0.24681324143625435 254.95039234517102 219203.54409795091 0.09637470230316542 0.07117646403181592 106.92428546782283 -2.029076356722456 0.3534434520513511 EQPGSYSDAPEYLWSGT(ph)L ddPTM_BT-474_Trastuzumab_2h_R1 1 EQPGSYSDAPEYLWSGTL 18 0 Q96A59-2 Q96A59-2 1 EQPGSYSDAPEYLWS(0.128)GT(0.872)L 157.42 5.0195e-08 29430000.0 38385.0 45765.0 58680.0 40605.0 57399.0 78266.0 46906.0 33278.0 51293.0 51962.0 True False 38178.339424974416 47288.260359473265 66941.63394429666 45745.58883667553 64708.422419472634 72855.65563834668 44636.97758167913 35761.37334226001 38652.52744098656 48645.74067309361 0.784823889958596 0.9720945699492416 1.376104732255062 0.9403822041500505 1.330197084557157 1.4976780007924473 0.9175927216659328 0.7351388394429349 0.7945716707396258 1.0 15.570025870500015 2.0149686066692425 24.98946093544866 0.8169472484514947 1.1557454940738225 0.307247831394598 0.21314380767826402 260.6641464492072 435166.1003474028 0.08203830723491293 0.06056767021598696 103.50673432881156 -2.0149686066692425 0.33879824562232785 EQPWVSVQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQPWVSVQPR 10 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 87.94200000000002 0.028587 0.0 94411.0 86517.0 98704.0 85888.0 89725.0 99957.0 93749.0 91563.0 139780.0 104840.0 False True 93902.70166604829 89396.66604436899 112600.6652494521 96761.41199370506 101150.94690825943 93047.20786346843 89214.00271404155 98395.89600749308 105333.09195603893 98149.02144196026 0.9567359947809261 0.9108258516589806 1.147241853206226 0.9858622182078937 1.0305853835544794 0.9480197203849989 0.9089647701357637 1.0025153033815912 1.0731955388707255 1.0 16.582686263462303 2.7538438231612505 24.448990339154168 0.9815456293622632 1.0076490961663391 0.01712701847996312 0.0693005987002621 2756.2613848681044 4409268.022744911 0.021821372658407456 0.023071291803981805 567.3405471244314 -2.7538438231612505 0.026103466804075937 EQQAQVEKEDFSDMVAEHAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EQQAQVEKEDFSDMVAEHAAK 21 1 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;; 153.82 2.3778000000000003e-08 1838540000.0 1076640.0 961940.0 868520.0 804332.0 705260.0 1083400.0 1122840.0 881640.0 1436980.0 1075860.0 False True 1070843.489865948 993957.5913949894 990800.0666888305 906160.3487299819 795070.6805964774 1008507.1080492786 1068523.939534657 947432.4536772089 1082855.5335454906 1007197.6937099122 1.0631909669308344 0.9868545148607775 0.9837195546380942 0.8996846938680237 0.7893889010685815 1.0013000569277946 1.0608879927026595 0.940661857740595 1.075117169457468 1.0 19.9419154540018 2.5089253627913846 24.99383015638105 1.0108930480886733 0.9414731863339452 0.18515418139907036 0.07430387439550443 1266.0169550288053 994921.2537046982 0.025469249005737677 0.02399349117157221 322.7939325152951 -2.5089253627913846 -0.06941986175472814 EQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 9 EQQEAIEHIDEVQNEIDR 18 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 ;;;;;;;; 334.04 1.2243e-74 33907540000.0 10943280.0 11379710.0 10009380.0 9607110.0 10380350.0 10777690.0 9939020.0 9902770.0 10694450.0 10299350.0 False True 10884362.596392702 11758476.768170051 11418613.700909406 10823369.14096081 11702226.043345237 10032653.658253305 9458231.631856484 10641764.982647164 8058946.095788097 9642036.665282836 1.128844763221342 1.219501353952291 1.1842532959891474 1.1225189777520226 1.2136674490650226 1.0405118759169343 0.9809371152789574 1.103684351353273 0.8358136745948268 1.0 23.200906485131885 2.6128025852843906 4.398500888943253 1.0017550509871544 1.1736702506080905 0.6383707696541117 0.06863429129765143 0.15968833759494358 4.99781657899805 0.0223145246809298 0.020880161745474184 410.01768126789483 -2.6128025852843906 0.17191519962093604 EQQEAIEHIDEVQNEIDRLNEQAS(ph)EEILK ddPTM_BT-474_Trastuzumab_2h_R1 5 EQQEAIEHIDEVQNEIDRLNEQASEEILK 29 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 1 EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK 316.0 1.953999999999999e-92 918540000.0 316891.6 270298.8 237405.0 214721.1 258992.4 305118.4 298181.5 301254.9 399577.1 311673.8 True False 315185.49083556654 279295.5321589248 270829.5604387481 241904.76924414962 291973.5469717766 284026.28317945637 283757.3216810525 323736.07037938567 301106.6777638239 291782.5112466352 1.0802069304597544 0.9572044978488944 0.928189833179631 0.8290584936383477 1.0006547195866031 0.973417776020775 0.9724959884288636 1.1095115639255744 1.0319558786349168 1.0 18.154533888556642 1.8862964004754599 6.68066745186722 1.0566200876412128 0.9569603598477463 0.26112252943433767 0.06417772263493317 0.2941800213161834 15.272357072778805 0.02859272589525376 0.01755188835278898 76.96555412237066 -1.8862964004754599 -0.09965972779346655 EQQEAIEHIDEVQNEIDRLNEQAS(ph)EEILKVEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQQEAIEHIDEVQNEIDRLNEQASEEILKVEQK 33 2 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 1 EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILKVEQK 158.52 2.9383e-14 30768000.0 33108.0 27821.0 28206.0 28497.0 29057.0 37904.0 44408.0 39681.0 72759.0 41313.0 True False 32929.75020664461 28747.00516685036 32177.159629053003 32104.717278136763 32757.236715667772 35283.78569641854 42259.81538496584 42642.19771603522 54828.519370649745 38676.36897016124 0.851417831701054 0.7432705275158749 0.831959164881213 0.8300861257918369 0.8469573951200003 0.9122827875501945 1.0926520898993706 1.1025388073253104 1.4176232368904607 1.0 15.239164737067565 2.210849413406985 1.391276415813336 1.196885993008186 0.8114717472651913 0.7122901774747747 0.10119647663210177 0.2115280536660632 0.7946413662441822 0.05814014178996699 0.033104101116840055 162.49852132103905 -2.210849413406985 -0.38541424574299477 EQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_BT-474_Trastuzumab_2h_R1 5 EQQEAIEHIDEVQNEIDRLNEQASEEILK 29 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 0 ;;;; 326.91 2.9840999999999993e-105 5185350000.0 327644.0 328946.0 298409.0 306459.0 297096.0 381661.0 378021.0 344162.0 499320.0 375142.0 False True 325880.0011086708 339894.76875794394 340422.393382475 345256.6779780506 334929.4145740453 355277.6734033561 359734.6800495447 369845.1160592251 376269.2765452093 351200.11638477485 0.9279040236753129 0.9678093853065676 0.9693117328284374 0.983076775520733 0.9536711377598082 1.0116103521278845 1.0243011413339607 1.0530893892245263 1.0713814118813352 1.0 18.421933797407206 2.4613422296522147 1.7008853473529122 1.0457320777677859 0.9612867693691679 0.7274857954063834 0.022212013342258627 0.17707550834686167 1.03986335868627 0.009718751905007296 0.007505294861820802 289.2958673130079 -2.4613422296522147 -0.08444530839861797 EQQEVADRLETK ddPTM_BT-474_Trastuzumab_2h_R1 2 EQQEVADRLETK 12 1 O75884 O75884 RBBP9 Putative hydrolase RBBP9 0 ; 87.083 0.0098025 440740000.0 247430.0 242460.0 221217.0 233604.0 504210.0 286900.0 257860.0 235110.0 326170.0 282890.0 False True 246097.8643720575 250530.13452983464 252362.43074736628 263178.24244804215 568418.1548131901 267067.27828995575 245386.326679141 252655.1020643894 245789.77395407914 264835.71800568583 0.9292472564700428 0.9459831793702991 0.9529017937903234 0.9937414954065671 2.146304732207559 1.0084262058799107 0.9265605429924401 0.9540068989446697 0.9280839299357733 1.0 18.01473818387279 2.4977729503225183 24.914670390693537 0.9505772247381254 1.1975945732400666 0.1058174387919888 0.3376888061553524 1832.3641671064931 2210605.281952669 0.11632457634133314 0.10848623858522474 314.61030975948427 -2.4977729503225183 0.24701734850194113 EQQHVMEELFQSSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 EQQHVMEELFQSSFR 15 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 209.89 2.1563e-09 2245350000.0 1321800.0 1589710.0 1558780.0 1580900.0 1448070.0 1644440.0 1509960.0 1421360.0 1707690.0 1618040.0 False True 1314683.5756657843 1642622.5363500118 1778242.6748413544 1781041.777906672 1632473.1311166682 1530763.7333953804 1436917.466192645 1527429.1007198351 1286852.6813736453 1514775.3019262636 0.8679066617959557 1.0844001313337834 1.173931653480257 1.175779520330052 1.0776998601975714 1.0105549855802278 0.9486010660230526 1.008353581404107 0.8495337095457125 1.0 20.530672373029766 2.559317727558128 2.717039991035632 0.9582813159747483 1.087671522371175 0.29556390740657457 0.0893582480082831 0.36084617043786066 5.241457366437718 0.03344050575860556 0.029989122617455573 362.50811045403344 -2.559317727558128 0.12939020639642673 EQQIEEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQQIEEHR 8 0 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ;; 153.05 0.00064942 1312080000.0 1252630.0 1450330.0 1372350.0 1420230.0 1326050.0 1377720.0 1449490.0 1284130.0 1632630.0 1486830.0 False True 1245885.9792602777 1498603.3573069996 1565564.9513199653 1600030.9723805366 1494914.607385872 1282481.4592040356 1379372.6311104796 1379958.3012800158 1230290.2126211738 1391939.2364607935 0.8950721027364116 1.0766298686409725 1.1247365619929217 1.1494977154669814 1.07397978893598 0.9213631066719046 0.990971872175781 0.9913926306070364 0.883867758300545 1.0 20.408664802658752 2.7524457769043464 23.877894141579358 0.962651417891017 1.07281180734522 0.35238442488107913 0.07149745970635622 498.113112850437 856588.5698568312 0.022409850507670397 0.023640848932622683 565.517146004014 -2.7524457769043464 0.11016038945420292 EQQIEEHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQQIEEHRR 9 1 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 58.955 0.068448 83076000.0 35111.0 42557.0 34172.0 44107.0 38894.0 45395.0 42294.0 41225.0 52635.0 45130.0 False True 34921.96627719883 43973.48401875026 38983.120571651394 49690.94167760738 43846.9203572008 42256.95049833583 40248.077641230084 44301.41883630833 39663.80952286525 42249.76476226308 0.8265600169303347 1.0407983160660526 0.922682547252206 1.1761235111536208 1.0378027097647717 1.0001700775403881 0.9526225262484567 1.0485601301117244 0.9387936180485538 1.0 15.366655688346372 4.743311730817984 24.206393495460468 1.0158756863798484 0.8265598941274376 0.3993556456353552 0.06853892740825131 311.0645683238621 1584752.6646053276 0.015802485426992637 0.1271233493396611 55374.743916569976 -4.743311730817984 -0.1893157922524108 EQQTRPIWTAEDQLDGSLEDNLDLPHHGLADSS(ph)ADLSCDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQQTRPIWTAEDQLDGSLEDNLDLPHHGLADSSADLSCDSR 41 1 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 EQQTRPIWTAEDQLDGSLEDNLDLPHHGLADS(0.165)S(0.769)ADLS(0.054)CDS(0.012)R 183.05 8.9624e-28 144820000.0 26789.0 39959.0 44202.0 46232.0 34718.0 42541.0 33419.0 22441.0 51883.0 39199.0 True False 26644.77100053771 41289.01115927442 50425.25738932857 52084.966459726274 39139.13151029197 39600.24080074246 31802.39529702244 24115.66137308905 39097.12984658151 36697.286260047666 0.7260692469662496 1.1251243720499782 1.3740868202624168 1.4193138449158618 1.066540213162921 1.0791054281268542 0.866614361390687 0.6571510820227535 1.0653956690292534 1.0 15.163385760222095 2.3623476989396055 2.7395474432304217 0.8434937892770952 1.1657448216310191 0.22406777475084283 0.20514323070770593 0.33036914510784254 5.055381862018269 0.0844096009796353 0.0665765533659812 230.32851042208202 -2.3623476989396055 0.32225103235392394 EQS(ph)AEEDAEAEVDNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQSAEEDAEAEVDNSK 16 0 Q8NEZ4;Q8NEZ4-3;H0YMU7;C9J4Z5 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 EQS(1)AEEDAEAEVDNSK 151.87 6.318999999999999e-07 143990000.0 121290.0 97838.0 86890.0 75730.0 77882.0 107910.0 112480.0 114910.0 128430.0 105480.0 True False 120636.98811658574 101094.47868568002 99123.35673858109 85317.41023522822 87799.81105721985 100450.4356928168 107038.91268467283 123485.167701157 96780.14737383071 98748.17609402863 1.2216629500246612 1.0237604650987906 1.003799367840427 0.8639897323671928 0.8891284328493958 1.0172383902783912 1.083958376940043 1.2505058076573854 0.9800702271369148 1.0 16.591466480998445 2.221756266103222 4.08512233421975 1.1177568201565324 0.9915027179547061 0.05586319299408027 0.11490268956273521 0.35840569377293263 13.447580826666712 0.04583780227516288 0.03457127156500649 166.63117858563302 -2.221756266103222 -0.1262541022018263 EQS(ph)DDETEESVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EQSDDETEESVK 12 0 O94885;A0A1B0GWB9;A0A1B0GVI0 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 EQS(0.749)DDET(0.251)EESVK 269.87 1.1927e-22 281080000.0 398170.0 283250.0 249880.0 228450.0 240170.0 367350.0 358200.0 315060.0 420070.0 307760.0 True False 396026.2969608456 292677.80502175906 285060.9320041043 257371.74657649387 270754.2259008824 341955.9591488854 340872.49754311726 338571.37704226363 316549.37714961555 288118.4933134081 1.3745257807177897 1.0158244327044688 0.9893878338938213 0.8932843692769533 0.9397322011064478 1.1868587650044187 1.1830982927302922 1.1751115770065275 1.0986777471631473 1.0 18.1363027394305 2.7222822269379283 24.408597887790034 1.146870309165385 1.0298200207425319 0.08435419621287343 0.13229249227291148 1168.3450885962754 1751870.250806981 0.04345547922766467 0.04109769580926376 527.5725939108191 -2.7222822269379283 -0.11705028842285303 EQS(ph)PSQHGKDPASLLASELVQLHMQLEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EQSPSQHGKDPASLLASELVQLHMQLEEK 29 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 EQS(0.878)PS(0.121)QHGKDPAS(0.001)LLASELVQLHMQLEEK;EQS(0.878)PS(0.118)QHGKDPAS(0.004)LLASELVQLHMQLEEK;EQS(0.779)PS(0.216)QHGKDPAS(0.006)LLASELVQLHMQLEEK;EQS(0.893)PS(0.107)QHGKDPASLLASELVQLHMQLEEK 236.47 1.4262999999999995e-45 346000000.0 386719.0 385428.0 376346.0 370569.0 399757.0 546596.0 492580.0 449336.0 686405.0 520731.0 True False 384636.9478725205 398256.737983854 429332.24554192636 417482.9974047042 450663.6844046255 508811.1050685835 468752.02356166637 482867.7340019755 517249.68510577217 487497.50175976136 0.7890029107514678 0.8169410849209128 0.88068604247638 0.8563797678914871 0.9244430643804867 1.043720435965076 0.9615475399762504 0.9905029918285255 1.0610304324403956 1.0 18.895035300051802 3.330075893398802 0.8405487449337673 1.0143766768797262 0.7972842229459771 0.8566878214895951 0.033890327870053326 0.24221054781199836 0.3655330340134484 0.01676463561786379 0.032753230958905845 2138.3357331803704 -3.330075893398802 -0.2170924539337491 EQSEVS(ph)VS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQSEVSVSPR 10 0 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 2 EQS(0.001)EVS(0.999)VS(1)PR 109.44 0.0029504 243680000.0 362740.0 393870.0 316190.0 426700.0 376740.0 407110.0 380580.0 348310.0 431210.0 414980.0 True False 360787.04814420233 406979.7248505574 360706.80362725176 480720.1762494634 424715.6058870727 378967.4439338586 362169.8914432152 374302.66088234243 324944.0734179674 388495.62111774756 0.9286772579474013 1.0475786668576312 0.9284707060261217 1.2373889179661148 1.093231384861214 0.975474170966264 0.9322367402783327 0.9634668720471795 0.8364163088455544 1.0 18.567538811995632 2.5279963145998496 4.449748468255884 0.9351083146600332 1.0506714428058015 0.263591207200234 0.09019678814533055 0.3030277413530755 12.762774815179018 0.03108286213364526 0.028301044383465104 337.28444646863693 -2.5279963145998496 0.1155631281457683 EQSEVSVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 EQSEVSVSPR 10 0 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR 188.48 1.1708e-06 22588000000.0 6480539.0 7338830.0 6615380.0 7024460.0 6824320.0 7242260.0 7370480.0 6506972.0 7963210.0 7233090.0 True False 6445648.498079578 7583098.520133582 7546768.002086244 7913755.9157658955 7693356.701086353 6741619.612646269 7013941.724432154 6992555.292374307 6000783.5970471315 6771468.003640093 0.951883475579392 1.119860348754094 1.1144951136192887 1.1686913253539337 1.136143107661542 0.9955920354378432 1.0358081468688496 1.0326498314125336 0.8861865099002654 1.0 22.69103720253132 2.728661726940098 24.220262932399514 0.9992247893165865 1.1042370498066212 0.3944465206114598 0.06631764882323621 496.01672759789534 1213634.1074525546 0.021639121207155804 0.020631773699175373 535.3794866433936 -2.728661726940098 0.10501226049003465 EQSGTIYLQHADEER ddPTM_BT-474_Trastuzumab_2h_R1 3 EQSGTIYLQHADEER 15 0 P37198;M0QXN5 P37198 NUP62 Nuclear pore glycoprotein p62 0 ;; 218.28 1.9586e-12 2825590000.0 1376030.0 1597860.0 1586090.0 1532020.0 1544370.0 1709920.0 1563750.0 1395570.0 1758940.0 1576470.0 False True 1368621.6073713063 1651043.8041732318 1809397.6854585805 1725973.5749184494 1741036.365301851 1591717.2551187216 1488105.4383948892 1499714.5199608675 1325472.8055884612 1475858.3349161278 0.9273394166582284 1.1187007350993885 1.2259968607091327 1.169471035318939 1.1796771574290652 1.0785027380078305 1.0082982920440378 1.016164278427235 0.8981030050311618 1.0 20.49312281557162 2.2144476849275994 1.875714611781786 0.9734599435429958 1.1321100575266245 0.42221532084166113 0.07957865671395577 0.34489541432141585 2.422188841082948 0.04220997735665553 0.026406289781649297 163.8504675277406 -2.2144476849275994 0.15865011398362872 EQSIFGDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQSIFGDHR 9 0 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ; 99.522 0.0052799 464210000.0 386980.0 454640.0 402480.0 363590.0 367440.0 444020.0 395740.0 385180.0 436710.0 421940.0 False True 384896.54267751944 469772.41756431595 459145.6855811264 409620.4567202779 414231.30601249164 413325.9425106525 376596.5443263908 413924.0875044083 329088.67211419187 395011.42795899196 0.974393436327309 1.1892628524486266 1.1623605118300337 1.036983812941236 1.0486565114148925 1.0463645182274621 0.953381390184709 1.0478787655413853 0.8331117755619875 1.0 18.591534866514582 2.5811393088653625 0.8238693926564644 0.9538488151650694 1.1088918573461146 0.3753237111490175 0.07601070335180103 0.6613597388158801 0.9295757902405924 0.051474574835103225 0.04144138682840635 381.18807768157916 -2.5811393088653625 0.15504304218104525 EQSIFGDHRDEEEETHMK ddPTM_BT-474_Trastuzumab_2h_R1 3 EQSIFGDHRDEEEETHMK 18 1 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ;; 182.76 4.3051e-14 1918300000.0 1733810.0 1560480.0 1505120.0 1329410.0 1377530.0 1993620.0 1775200.0 1373820.0 2225910.0 1912870.0 False True 1724475.3596043992 1612419.6334699201 1717027.813262435 1497713.1696925212 1552950.2802400077 1855805.7418766872 1689326.794077449 1476341.4245166078 1677364.3061658782 1790788.9989096015 0.9629695964485039 0.9003962133181022 0.958810789159371 0.8363426236170023 0.8671877486323558 1.0363061996732579 0.9433421777250519 0.8244083615744465 0.9366621680093039 1.0 20.772163930009455 EQSISLMSVGFLLEKPDEAVVWR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQSISLMSVGFLLEKPDEAVVWR 23 1 H3BQR2;Q9Y5Y2;H3BRE1;H3BNF0;H3BNS4 H3BQR2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 0 ; 275.15 9.278999999999999e-52 381430000.0 236210.0 246470.0 231430.0 226881.0 227436.0 290810.0 300230.0 268320.0 340440.0 288730.0 False True 234938.2716053979 254673.60495573902 264013.33237437933 255604.11133736678 256398.62648121358 270706.9891931059 285706.72791002254 288343.40090135275 256543.12366228283 270303.00420581055 0.8691663353712277 0.9421782258913733 0.9767310324577739 0.9456206825683228 0.9485600325995264 1.0014945634381027 1.0569868757081349 1.066741384353265 0.9490946074241526 1.0 18.04421802082196 2.669563565592615 2.836374022457634 1.0295996105627228 0.938101568001062 0.4858842760865334 0.039906003888784444 0.22107397615060245 3.5033603793714305 0.0141902306863458 0.01356208048809693 467.26533754509904 -2.669563565592615 -0.09149804256166072 EQSLDALQTHYDELQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQSLDALQTHYDELQAR 17 0 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 ;; 201.12 1.1776e-11 1317550000.0 577770.0 721930.0 653060.0 697350.0 627520.0 680030.0 688970.0 625510.0 741750.0 660730.0 False True 574659.3505162818 745959.003634099 745005.1715007217 785634.4384990927 707430.9523975584 633021.1267184335 655641.8889790099 672188.7324754208 558955.6514407774 618561.6457205871 0.9290251901196335 1.2059574155541146 1.2044153992652349 1.270098855844636 1.143670897301503 1.0233759740809696 1.059945914065245 1.086696430543089 0.9036377462259685 1.0 19.238557855480924 2.781769185543863 4.985272732851823 1.0290217735788496 1.1647202765669844 0.32800816396158883 0.09539254058248581 0.2542897552930316 15.3361379504344 0.03002543011931482 0.0313238943975993 605.0192397612682 -2.781769185543863 0.1356985029881348 EQSSDLTPSGDVS(ph)PVKPLSR ddPTM_BT-474_Trastuzumab_2h_R1 5 EQSSDLTPSGDVSPVKPLSR 20 1 Q8WYQ5-3;Q8WYQ5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR 308.35 2.0232999999999996e-66 7077840000.0 5369400.0 4847200.0 4413400.0 4322690.0 4374270.0 5719630.0 5517220.0 5275650.0 7327040.0 5919660.0 True False 5340491.746996419 5008536.121805723 5034768.35803951 4869942.110784605 4931307.356170428 5324245.440660785 5250330.990772866 5669345.792207882 5521389.169305868 5541862.230724101 0.9636637513990723 0.9037640982914341 0.9084975678620698 0.8787555352396946 0.8898285722137308 0.9607321905519687 0.9473947153837594 1.0230037406518357 0.9963057433465723 1.0 22.401939415560022 2.1738806127101755 1.5870473959669007 1.007640281647604 0.9084120655905792 0.707939197936367 0.025782544250753898 0.1996993983242908 0.9777087603667546 0.01498803316568387 0.008531750707745542 149.23840977004983 -2.1738806127101755 -0.09922821605702481 EQST(ph)PPKS(ph)PQ ddPTM_BT-474_Trastuzumab_2h_R1 4 EQSTPPKSPQ 10 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 2 EQST(1)PPKS(1)PQ;EQS(0.001)T(0.999)PPKS(1)PQ;EQST(1)PPKS(1)PQ;EQST(1)PPKS(1)PQ 188.09 2.9048e-05 1809855000.0 5669400.0 4465450.0 3973240.0 3830210.0 4108930.0 5464500.0 5287910.0 5059180.0 7327930.0 5330860.0 True False 5638876.580329551 4614079.803828476 4532637.655978821 4315114.19327972 4632177.8799638245 5086751.977049367 5032113.591522125 5436721.701595501 5522059.840731263 4990639.95082114 1.1298904821618625 0.9245467213216401 0.9082277424627756 0.8646414559659285 0.9281731252124619 1.019258457267071 1.0083102850755965 1.089383677277894 1.1064833157965415 1.0 22.25079339384042 2.318189762091823 1.8177182614633736 1.0688816805646904 0.9441744738707857 0.2962014203836808 0.07226057434496637 0.3936327049947345 2.6417902257363606 0.03531732916848639 0.024251300835960603 208.06055953261867 -2.318189762091823 -0.12470720669390467 EQSTPPKS(ph)PQ ddPTM_BT-474_Trastuzumab_2h_R1 6 EQSTPPKSPQ 10 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 EQST(0.001)PPKS(0.999)PQ;EQST(0.003)PPKS(0.997)PQ;EQSTPPKS(1)PQ;EQST(0.064)PPKS(0.935)PQ;EQST(0.005)PPKS(0.994)PQ;EQST(0.035)PPKS(0.965)PQ 162.93 1.7413e-05 3893072000.0 6580670.0 5974210.0 5613720.0 5016350.0 5360690.0 6616560.0 6584740.0 5781570.0 7696180.0 6099350.0 True False 6545240.40390117 6173057.9683637945 6404082.980671038 5651419.395662046 6043342.096201021 6159172.780906904 6266210.970050444 6213020.111617595 5799559.562528449 5710084.261083752 1.1462598631878873 1.081080013203198 1.1215391381029407 0.9897260946179853 1.0583630328169655 1.0786483174834824 1.0973937832681195 1.088078533965169 1.015669698966529 1.0 22.44508060425568 7.999999898110979 0.009871808970994933 2.60447161456491e-07 2.281895138601886 0.3494650895550967 0.03961481906944953 17456.353323846895 13.319927422754228 1328.760714642697 1780.8207401507414 99999976.53918871 -7.999999898110979 2.2818948781547244 EQTLHT(ph)PVMMQTPQLTSTIMR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQTLHTPVMMQTPQLTSTIMR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 EQT(0.002)LHT(0.998)PVMMQTPQLTSTIMR;EQT(0.004)LHT(0.996)PVMMQTPQLTSTIMR;EQT(0.001)LHT(0.999)PVMMQTPQLTSTIMR 158.73 8.6184e-11 1046090000.0 473620.0 523990.0 524570.0 610930.0 506400.0 566780.0 550920.0 459630.0 575470.0 624280.0 True False 471070.0825441292 541430.6903913564 598424.8963558227 688273.6753599356 570887.0383320432 527599.832656609 524269.8948812241 493929.9245538486 433653.129402931 584437.9159270022 0.8060224528672898 0.9264126704246588 1.0239323631264325 1.1776677327107277 0.9768138287649162 0.9027474403671434 0.897049764558237 0.8451366879070552 0.7420003349972513 1.0 19.15669025173193 2.516875100617814 2.334649756340897 0.8569151596747226 0.9915501645125752 0.19894287063097493 0.10476337631423056 0.4532509236648686 4.956106431197846 0.04222336231774506 0.03629774577212996 328.75706955496645 -2.516875100617814 0.1346350048378525 EQTLS(ph)PTITSGLHNIAR ddPTM_BT-474_Trastuzumab_2h_R1 7 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;O94979-7;H7BXG7;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 EQT(0.027)LS(0.945)PT(0.027)ITSGLHNIAR;EQTLS(0.825)PT(0.148)IT(0.027)SGLHNIAR;EQT(0.04)LS(0.783)PT(0.176)IT(0.001)SGLHNIAR;EQT(0.016)LS(0.619)PT(0.341)IT(0.021)S(0.003)GLHNIAR;EQTLS(0.644)PT(0.036)IT(0.295)S(0.025)GLHNIAR;EQT(0.026)LS(0.633)PT(0.287)IT(0.027)S(0.027)GLHNIAR;EQTLS(0.881)PT(0.097)IT(0.011)S(0.011)GLHNIAR 300.25 2.5838999999999996e-46 11745990000.0 2170676.0 2740750.0 2549060.0 2730700.0 2712200.0 2696680.0 2704210.0 2393990.0 2918930.0 2792340.0 True False 2158989.3216007752 2831974.2069316367 2907945.4911732893 3076406.3400150235 3057582.593531132 2510264.8589019105 2573397.031214613 2572641.6902349032 2199598.813158107 2614130.470557453 0.8258919537173595 1.0833331537303603 1.1123949335830898 1.1768373364161093 1.1696365686289234 0.9602676251911046 0.9844179776787676 0.9841290322767622 0.841426561501749 1.0 21.317899716780744 2.696212845235329 18.770176894504566 0.9582030169383643 1.0820467182923563 0.2610197715270113 0.09997127224443855 39.0402448897711 17303.178643680818 0.03320071145093203 0.03130419208193779 496.8357581482024 -2.696212845235329 0.12384370135399203 EQTLSPTITSGLHNIAR ddPTM_BT-474_Trastuzumab_2h_R1 3 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;O94979-7;H7BXG7;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 0 ;; 230.07 9.0633e-16 946570000.0 689338.0 991020.0 941542.0 902231.0 915250.0 970520.0 940505.0 858486.0 959940.0 921089.0 False True 685626.6808006519 1024005.5016157598 1074102.9295702286 1016453.3520921711 1031801.6623882338 903430.2367583397 895009.1800719986 922550.584623578 723375.6495369871 862304.3114360338 0.7951098837240501 1.1875221868141164 1.2456193426442193 1.178764084339815 1.1965632650843743 1.047693053110006 1.0379272934186075 1.0698666032264335 0.8388867363220269 1.0 19.717837567791626 1.7096947074865112 1.2843970366580475 0.9372102389610266 1.1261885479602216 0.20847032497972307 0.12796063972362115 0.6369864725013489 1.991652002754434 0.10602729653032841 0.04046258699257955 51.2500988618957 -1.7096947074865112 0.188978308999195 EQVANSAFVER ddPTM_BT-474_Trastuzumab_2h_R1 5 EQVANSAFVER 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ;;;; 244.74 1.5755e-15 12014380000.0 2289306.0 2756236.0 2421748.0 2581079.0 2440100.0 2548569.0 2615203.0 2421986.0 2910910.0 2542321.0 False True 2276980.630861809 2847975.6490801508 2762709.0681890333 2907843.3367560063 2750832.2713941876 2372392.423716117 2488695.639844371 2602726.893915707 2193555.2346956143 2380067.8971894844 0.9566872581872952 1.196594287265165 1.1607690148047427 1.2217480602926278 1.1557789064095703 0.996775103146246 1.0456406066327604 1.0935515314454476 0.9216355706851411 1.0 21.182571299807538 2.7448893249092303 24.379625140185347 1.026397119736806 1.1474357817164929 0.3841238879341342 0.0787404213721175 403.7732564971993 1555427.7446354656 0.024155196337234664 0.025042372548077518 555.7626093381498 -2.7448893249092303 0.12103866197968682 EQVEPTPEDEDDDIELR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQVEPTPEDEDDDIELR 17 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;B4DSP0;A0A087WZG9;Q86TG7-2 A0A087WXK2;B4DSP0 PEG10 Retrotransposon-derived protein PEG10 0 ; 410.08 4.431799999999998e-140 3329500000.0 804690.0 1001220.0 937440.0 890510.0 845320.0 1007070.0 1036840.0 826310.0 899820.0 949650.0 False True 800357.6384494628 1034545.0024497302 1069423.4036254506 1003248.4746939518 952966.4913958189 937453.6212877847 986684.0880865608 887973.4481171606 678071.4179702598 889042.5239637297 0.9002467450950805 1.163662001044999 1.202893421630167 1.1284594917024253 1.0719020358521085 1.0544530728498989 1.1098277770645923 0.9987974975124894 0.7626985208166748 1.0 19.761892900965837 1.5003717153447902 4.148600716054451 0.8785236814839209 1.0954407458921727 0.4401190747889522 0.09329892277791775 0.15360800098221214 5.624418937037065 0.05852888536660042 0.02337724964447912 31.649854318950155 -1.5003717153447902 0.21691706440825176 EQVNDLFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQVNDLFSR 9 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A087WW90;A0A0D9SF80;A0A494C0I1;A0A494C1N8;Q86UP8-3;Q86UP8;Q6EKJ0 A0A494C1K3;A0A087WW90 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B 0 186.78 9.6058e-05 183010000.0 200080.0 261160.0 237780.0 237260.0 243690.0 260150.0 243160.0 239940.0 271720.0 255510.0 False True 199002.79151097775 269852.5527254465 271257.35717919003 267297.09167318384 274722.4770362078 242166.44282722878 231397.42183859422 257845.54119063227 204758.24686145986 239203.13304688345 0.8319405727515011 1.128131347144838 1.1340041985404263 1.117448121470859 1.1484902958288703 1.0123882565524946 0.9673678554755413 1.0779354680947884 0.8560015257882411 1.0 17.86787676030059 2.5206592860442143 11.819784821208998 0.991382732839287 1.0810492860842102 0.16452906804116862 0.0997094315190528 2.4308114719491045 657.6863137774203 0.031937639979711906 0.03001429342697363 331.6341808682423 -2.5206592860442143 0.08966655324492323 EQVYDAMGEKEEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 EQVYDAMGEKEEAK 14 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 0 ;; 184.99 2.5136999999999995e-07 1389090000.0 894390.0 649290.0 593780.0 582330.0 600910.0 821420.0 888040.0 779500.0 1328990.0 854710.0 False True 889574.7036160696 670901.2251459066 677379.0627717187 656052.9182923593 677432.326627385 764637.1688146926 845082.1125577613 837670.2482207972 1001478.2220536271 800161.6760459532 1.1117437016128493 0.8384570833999513 0.846552744339154 0.8199004500369027 0.846619310706003 0.9556033383068194 1.056139200184874 1.0468762417617834 1.2515948364366707 1.0 19.609932006516367 2.2331084592561554 1.8470339816149361 1.1036579437356766 0.8831090515439074 0.4693691809835573 0.0986979972605936 0.294672835102859 2.013736255671314 0.049390731060065425 0.03132094962056741 171.04424219445076 -2.2331084592561554 -0.2205488921917692 EQWDTIEELIR ddPTM_BT-474_Trastuzumab_2h_R1 6 EQWDTIEELIR 11 0 Q16698-2;Q16698 Q16698-2 DECR1 2,4-dienoyl-CoA reductase, mitochondrial 0 ;;;;; 158.56 6.9066e-05 359711000.0 835708.0 633849.0 580949.0 469545.0 561459.0 893406.0 586167.0 453574.0 1023318.0 643749.0 False True 831208.6409838876 654946.280795189 662741.5695007708 528989.3488564664 632957.4756217825 831646.9460715108 557811.8628346074 487421.99508210405 771134.9906586768 602664.3876787528 1.379223093279836 1.0867512568940854 1.0996859662695746 0.8777511325896388 1.0502652696299308 1.3799503721710134 0.9255762813248328 0.8087784927187732 1.2795429868169454 1.0 19.200995290785137 4.895109658812272 1.8522991501558403 1.0320236685741684 1.602947785964228 0.2515681309115324 0.16518703133993942 1.928480081062016 4.846718006745811 0.044293373773343955 2.1742302224850554 78543.39306571792 -4.895109658812272 0.5709241173900597 EQWIQDAEECDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQWIQDAEECDR 12 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 270.67 2.4949e-27 1409680000.0 635430.0 769390.0 725760.0 753650.0 682900.0 801840.0 703680.0 691950.0 840340.0 740770.0 False True 632008.9154829093 794998.6810439238 827940.6995809941 849062.0127265244 769863.2671345819 746410.6881283312 669640.3100813538 743586.8226509057 633249.466979093 693493.4243948963 0.9113408912771813 1.1463680160162952 1.1938695746155186 1.2243259746368447 1.1101233840916687 1.0763053575880803 0.9656044117010116 1.0722334149018329 0.9131297351977508 1.0 19.403522677623254 2.4849431266330235 2.9282788702006006 1.0010243963069805 1.128656636633669 0.32047009400746196 0.08703467763018065 0.33148438346042414 5.805539878842485 0.032542050591217876 0.028027838578276464 305.4521079871951 -2.4849431266330235 0.12763224032668852 EQYAQEHGLNFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EQYAQEHGLNFQR 13 0 Q15126 Q15126 PMVK Phosphomevalonate kinase 0 ; 220.85 2.0109000000000003e-11 2158610000.0 1378470.0 1545620.0 1445980.0 1598500.0 1520470.0 1705030.0 1553510.0 1413540.0 1731350.0 1586730.0 False True 1371048.4706824136 1597065.0273529778 1649561.4153165321 1800869.9361021006 1714092.8419682472 1587165.289308898 1478360.7863154884 1519025.5326106818 1304681.9914014027 1485463.5329321013 0.9229768622970851 1.0751290704529046 1.1104691422888882 1.2123286073185724 1.153911088335412 1.068464660439056 0.9952184981595656 1.022593620734892 0.8782995761775043 1.0 20.502481757800236 2.0612934189270606 1.6660491737718912 0.9618824153977522 1.1009919395832812 0.3553571804527407 0.07754405754367955 0.438426711606904 2.298399020832703 0.049927308507191806 0.02592188905401891 115.15781577687206 -2.0612934189270606 0.13910952418552902 EQYLGYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQYLGYR 7 0 Q5JRG1;H7BYF2;Q9BVL2-2;Q9BVL2-3;Q9BVL2 Q5JRG1 NUPL1 Nucleoporin p58/p45 0 98.523 0.026056 251050000.0 122240.0 130030.0 130920.0 124160.0 125170.0 134820.0 139200.0 115060.0 159450.0 137070.0 False True 121581.87342214078 134357.96994520517 149352.3980229604 139878.64326958827 141109.65755928488 125500.21073214304 132466.36420436064 123646.36146284151 120155.68402053503 128322.07524846889 0.9474743389765392 1.0470370720318312 1.1638870220402118 1.09005907984844 1.099652240552185 0.978009516204738 1.0322959938721938 0.963562670128473 0.9363601998165838 1.0 16.96940985306349 2.7305195785210796 24.15582509667531 0.9826686487399319 1.0747395801688049 0.3800466485648929 0.055732337335747374 417.8323956317208 1255192.2759376776 0.018774772895764593 0.01798963077698909 537.6746716011021 -2.7305195785210796 0.09207093142887302 EQYPGIEIESR ddPTM_BT-474_Trastuzumab_2h_R1 5 EQYPGIEIESR 11 0 Q9BRT3;J3KTI2 Q9BRT3 MIEN1 Migration and invasion enhancer 1 0 ;;;; 259.35 3.1338999999999995e-20 5700510000.0 1859952.0 2309260.0 2033780.0 2012330.0 2030286.0 2148900.0 2018735.0 1901196.0 2227930.0 2127070.0 False True 1849938.225092095 2386122.323122849 2320118.5460673417 2267090.771671159 2288830.8876520717 2000351.6009664892 1921081.0757334053 2043072.8995976744 1678886.5042324902 1991318.5715237549 0.9290016432059509 1.1982624765544123 1.1651167117333665 1.1384872335803025 1.1494046810906107 1.0045362050913944 0.9647281470706096 1.025989979109328 0.8431029209695001 1.0 20.925292611473477 2.619739841834331 3.998268328448685 0.9692862087026478 1.124438140135813 0.4557115504452196 0.08153640475211331 0.2148511503269954 5.940414412692467 0.026584889650712595 0.024882681197424546 416.6197383521155 -2.619739841834331 0.1551519314331652 EQYQQQQQWGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EQYQQQQQWGSR 12 0 Q14103-3;Q14103;H0Y8G5;H0YA96;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 265.36 2.9951e-21 164230000.0 84749.0 78003.0 76404.0 86953.0 77498.0 92275.0 90881.0 74615.0 80736.0 87615.0 False True 84292.72080049907 80599.2827011907 87161.01908452684 97961.24088450793 87366.91093336618 85896.24644198557 86484.73883086552 80183.15018729276 60839.69460697345 82023.33568902471 1.0276675545125145 0.9826384409281644 1.0626368502614993 1.194309400630921 1.0651470121210453 1.047217181798656 1.0543918764625149 0.977565097953238 0.741736410692137 1.0 16.323746795296493 1.5108187619193898 3.979563962772297 0.8661630187773798 1.062365994464087 0.48827515216116024 0.07738729766762165 0.14514666042758306 4.936865871716186 0.049448764547181584 0.019757892310180485 32.42042934426737 -1.5108187619193898 0.1962029756867073 EQYVPPRS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 7 EQYVPPRSPK 10 1 Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2;Q71RC2-6 Q71RC2-5 LARP4 La-related protein 4 1 EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK 115.12 0.0033295 6308140000.0 4824640.0 4142660.0 3690750.0 3497840.0 3604370.0 4578210.0 4474370.0 4262700.0 6305270.0 4408430.0 True False 4798664.6743079005 4280545.933809151 4210375.519425917 3940666.185358386 4063365.154725245 4261729.118647118 4257927.629346734 4580804.319552009 4751420.694789332 4127080.223153189 1.1627262894932546 1.0371850563492828 1.0201826210708085 0.9548314964296046 0.9845617082821657 1.0326257034545974 1.0317045948027572 1.109938278847452 1.1512789763895437 1.0 21.976690051386203 1.772735977164226 6.648133350107467 1.0976113286261324 1.0267690166922867 0.13275087473270075 0.06181781445346279 0.2918350326857872 32.479066448882456 0.029642190687827925 0.016397825442489213 59.25649740415666 -1.772735977164226 -0.07084231193384571 ERAS(ph)LDK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERASLDK 7 1 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 ERAS(1)LDK;ERAS(1)LDK;ERAS(1)LDK 106.62 0.0046399 6875500000.0 2937490.0 2652060.0 2453640.0 2344800.0 2182360.0 2524590.0 2981800.0 2908350.0 4069630.0 2799490.0 True False 2921674.8802258186 2740332.213895875 2799091.184578799 2641651.4395822394 2460270.6101388573 2350071.0355456257 2837558.9424178344 3125385.845302059 3066724.2167481366 2620824.1514360267 1.114792413151774 1.0455994204702237 1.0680194560345053 1.0079468468476989 0.938739292672804 0.8966916129256336 1.0826971893032398 1.1925202397076384 1.1701373459443236 1.0 21.321589126209858 2.0036531796920523 24.975490814535288 1.141109940361769 1.01062753189531 0.29270714056926195 0.07544621362211147 110.57614305744688 755964.525943237 0.029403956459130413 0.02161589564470625 100.84472353380438 -2.0036531796920523 -0.1304824084664591 ERAVELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERAVELLR 8 1 P49721;A0A087WVV1 P49721 PSMB2 Proteasome subunit beta type-2 0 ; 163.16 0.00030782 469150000.0 108491.0 293560.0 127841.0 71958.0 132794.0 152938.0 199873.0 199264.0 557580.0 329440.0 False True 107906.89651048323 303330.9671392325 145839.9015861082 81067.8754219801 149704.5287682965 142365.75603732766 190204.37940099265 214134.0915220894 420171.8801892131 308414.85715222586 0.34987580529307344 0.9835160664439584 0.4728692480405549 0.2628533403692904 0.4853998609230621 0.46160472732044644 0.6167160076439266 0.6943053700438244 1.3623594014533054 1.0 18.23451273976614 1.4072122294905802 3.6176716677700904 1.1753301517199117 0.5276231385052046 0.6238952452639378 0.2010366345165936 0.14694504762212426 3.261075315442554 0.15175643753816725 0.05176623419667697 25.53949052548766 -1.4072122294905802 -0.6477070132147071 ERDAEQSGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERDAEQSGSPR 11 1 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5 P08651-3 NFIC Nuclear factor 1 C-type 1 ERDAEQS(0.017)GS(0.983)PR;ERDAEQS(0.111)GS(0.889)PR;ERDAEQS(0.005)GS(0.995)PR;ERDAEQS(0.006)GS(0.994)PR 127.66 0.00017074 1886916000.0 2183570.0 2512680.0 2230350.0 2317000.0 2335840.0 2178190.0 2476300.0 2199990.0 2633350.0 2531600.0 True False 2171813.9017374353 2596313.034852862 2544363.8934502727 2610331.9624326364 2633295.3783916254 2027616.8522077356 2356511.90861536 2364164.4251228594 1984396.177582162 2370031.120588197 0.9163651408925095 1.0954763472508775 1.0735571661264978 1.101391428896006 1.1110805067142289 0.8555233028773561 0.9942957660532822 0.9975246335736379 0.8372869707675705 1.0 21.176474572423864 2.752475235966249 24.864819866608904 0.9466192879567998 1.0646687069122955 0.4044569589891608 0.07381776384156014 777.372316948527 1389129.05593087 0.022305352973765423 0.023552241168507626 565.5555074622994 -2.752475235966249 0.1180494189554957 ERDEDSLHQTDLFDSHMLWFLMHHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDEDSLHQTDLFDSHMLWFLMHHLR 26 1 Q5TAQ9;V9GY98 Q5TAQ9 DCAF8 DDB1- and CUL4-associated factor 8 0 158.67 6.8049e-12 75717000.0 36199.0 34417.0 34399.0 29901.0 29307.0 34428.0 37069.0 17328.0 42420.0 27674.0 False True 36004.10860608701 35562.54903948417 39242.08019853205 33686.46353418142 33039.0727338017 32048.073394794676 35275.8308526684 18621.103349801106 31966.159398878 25907.821627096586 1.3897003431747759 1.372656858278268 1.514680808111222 1.3002429929866923 1.2752547554691611 1.2370037842655246 1.3615900001323908 0.7187444632676329 1.233842036547183 1.0 14.661100095958844 1.7623297905306314 24.999999999918405 0.9616699020832011 1.3482013230321397 0.6022089757216051 0.13592669900751736 8.052412390384186 8475.577424733305 0.060564506388409545 0.033587631252812555 57.85352033603753 -1.7623297905306314 0.38653142094893855 ERDFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDFLK 6 1 E9PFR3;Q14738;H0Y8C4;Q14738-2;Q14738-3;H0YJZ3;E9PNH9;E9PNS4;C9J979;H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5;Q96B13;Q13362-2;G3V2U3;Q15172;Q15172-2;C9IYS7;A0A087WYI0;Q5TA45-2;Q5TA45-4;Q5TA45-3;Q5TA45;Q5TA45-5 E9PFR3;H0YJ75;Q15172;C9IYS7 PPP2R5D;PPP2R5C;CPSF3L;PPP2R5A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform;Integrator complex subunit 11 0 73.039 0.07662000000000001 208950000.0 316360.0 355550.0 310940.0 280650.0 302480.0 365100.0 368130.0 302730.0 474800.0 352090.0 False True 314656.7529109002 367384.2668154867 354717.64926106995 316180.2612243069 340999.0350605772 339861.49635295547 350322.145506834 325321.24983179185 357791.9019940428 329619.31476058514 0.9546065379677378 1.114571417279754 1.0761433974787389 0.9592285617545211 1.0345238273074429 1.0310727591913404 1.0628083058824573 0.986960518585159 1.085470074027429 1.0 18.33044125728829 ERDFYFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDFYFGK 8 1 Q15691;Q15555-4;Q15555-5;Q15555-3;Q15555 Q15691;Q15555-4 MAPRE1;MAPRE2 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 2 0 ; 134.26 0.00080641 620770000.0 1028590.0 1164920.0 1062440.0 1038920.0 951980.0 1129520.0 1153820.0 1100930.0 1422240.0 1172940.0 False True 1023052.1857270912 1203693.6579909897 1212022.3171059736 1170447.1654771327 1073209.0101724688 1051438.941004082 1098005.318579564 1183086.987009264 1071748.0090396106 1098081.9649955425 0.9316719683409462 1.0961783330954498 1.1037630666403793 1.0659014561648719 0.9773487265832886 0.9575231854466804 0.9999301997315121 1.0774122740592198 0.9760182237798262 1.0 20.066554315906952 3.251786980098408 24.935774850804695 1.0052566806328598 1.0566061437392322 0.16841941197028176 0.05353442812112246 421.06936748825575 793840.1797273379 0.015539154727337445 0.020920479148484297 1785.6115239062678 -3.251786980098408 0.05134946310637245 ERDHS(ph)PTPSVFNS(ph)DEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDHSPTPSVFNSDEER 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 ERDHS(1)PTPSVFNS(1)DEER;ERDHS(1)PTPSVFNS(1)DEER 249.35 2.913e-21 3189500000.0 1573580.0 1623820.0 1296140.0 1558210.0 1495900.0 1904110.0 1551140.0 1340190.0 1607180.0 1520560.0 True False 1565108.0201211716 1677867.8670800803 1478625.2457491579 1755479.2262331306 1686393.9981060463 1772483.35749281 1476105.4322697683 1440201.7831469264 1211112.0241086467 1423516.5589830885 1.0994659740658241 1.1786781519975376 1.0387130633769635 1.2331990205208325 1.1846676369614897 1.2451441792563422 1.0369429304877547 1.0117211310669665 0.8507888555745524 1.0 20.441027844577754 1.8219779771113958 2.1396583844172454 0.9360415275708551 1.1608163330732204 0.6348063861630431 0.07107887960074413 0.1853528576146362 1.621507811015594 0.04394341664179139 0.020029485678275154 66.37094131262766 -1.8219779771113958 0.22477480550236528 ERDHS(ph)PTPSVFNS(ph)DEERYR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERDHSPTPSVFNSDEERYR 19 2 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 ERDHS(0.999)PT(0.042)PS(0.394)VFNS(0.564)DEERYR;ERDHS(1)PT(0.271)PS(0.188)VFNS(0.542)DEERYR;ERDHS(0.997)PT(0.34)PS(0.259)VFNS(0.403)DEERY(0.001)R 63.559 0.020036 1597540000.0 334237.0 324079.0 278885.0 307531.0 318442.0 376188.0 376699.0 300408.0 482817.0 377686.0 True False 332437.505129222 334865.7736051074 318149.5838881252 346464.39306813607 358993.7011463911 350183.0090112997 358476.63024007494 322825.9704009149 363833.21976633853 353581.75612674747 0.9401998247049094 0.9470674541394296 0.8997907227263134 0.9798706722411886 1.0153060640880567 0.9903876626648422 1.0138436840377387 0.9130164800844317 1.0289931917073127 1.0 18.431684311879714 3.621658727410225 6.983965835593166 0.9863001569288227 0.9310459870280035 0.4381601882228564 0.032132884945116694 0.270596889441313 14.562175500390996 0.008937394263351996 0.01389131202396314 4184.646025586454 -3.621658727410225 -0.05525416990081922 ERDHS(ph)PTPSVFNSDEER ddPTM_BT-474_Trastuzumab_2h_R1 3 ERDHSPTPSVFNSDEER 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 ERDHS(0.867)PT(0.133)PSVFNSDEER;ERDHS(0.973)PT(0.026)PS(0.001)VFNSDEER;ERDHS(0.955)PT(0.041)PS(0.005)VFNSDEER 241.68 1.3657e-20 5003400000.0 2203000.0 2064550.0 1759800.0 1773890.0 1643140.0 2181790.0 1898350.0 1934730.0 2421040.0 1989930.0 True False 2191139.292776309 2133267.2987031695 2007564.5435441928 1998464.2921189617 1852384.1393461959 2030967.9926812227 1806519.558098763 2079109.3769598734 1824407.132273918 1862930.9637352135 1.176178471145829 1.1451134476963796 1.07763764875054 1.0727527380359825 0.994338585490108 1.0902003521424604 0.969719003691181 1.1160420957259833 0.9793208485922342 1.0 20.82914278138028 4.238044067015936 1.259139038079311 1.0359209733907906 1.1917207187874077 0.5637045664358551 0.04566434940838213 0.4912076634211241 1.190031445690609 0.012701214587678299 0.07963298123470236 17299.918892200203 -4.238044067015936 0.15579974539661712 ERDHSPT(ph)PSVFNSDEER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 ERDHS(0.365)PT(0.501)PS(0.133)VFNSDEER 203.9 1.3584e-11 940360000.0 319750.0 342430.0 305630.0 341640.0 363010.0 362390.0 345500.0 307980.0 346560.0 341870.0 True False 318028.5015275647 353827.57554669364 348660.0474164172 384891.58897086163 409237.17177115934 337338.83227430144 328786.84506182844 330963.03149075207 261154.93166608122 320051.5639103674 0.9936789486103894 1.1055330310642864 1.08938710736643 1.2025924331325972 1.2786601220476117 1.0540140099698918 1.0272933556228692 1.034092842562833 0.8159776770821199 1.0 18.287944832689575 1.8079560449249392 1.4738124218457334 0.9243614020028436 1.1291183018003783 0.4488981680713685 0.08796403862392052 0.36856748692908176 1.5186905921613696 0.06889546547045915 0.028291110690373607 64.26226739915431 -1.8079560449249392 0.20475689979753475 ERDLS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDLSR 6 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 ERDLS(1)R;ERDLS(1)R 76.679 0.045069 212241000.0 85858.0 114685.0 94458.0 96135.0 102885.0 90588.0 109388.0 94215.0 111311.0 107804.0 True False 85395.7500677206 118502.22089645342 107756.86535634572 108305.68114305638 115986.79490282826 84325.86478121484 104096.48453726013 101245.80171407614 83879.89554098329 100923.85642435207 0.8461403784320248 1.1741745222080104 1.0677045960596578 1.0731425153599574 1.1492505242282995 0.8355394628070091 1.0314358589268349 1.0031899820431989 0.8311205944043155 1.0 16.62290771406412 2.7502937789158324 24.99016869056023 0.9532770200383157 1.0692366194535519 0.2521518027437958 0.10333015457618056 1096.2153752069212 2334800.3679728853 0.030392186100460027 0.03200113248999067 562.721850203997 -2.7502937789158324 0.11595959941523615 ERDPQQEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDPQQEQER 10 1 Q9BZE9;Q9BZE9-2;J3KRY8;Q9BZE9-3;J3QL04;J3QR12;Q9BZE9-4 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 0 ; 86.463 0.012349 215381000.0 81738.0 108770.0 105437.0 90967.0 103003.0 101137.0 100077.0 92217.0 108075.0 95606.0 False True 81297.93168994546 112390.3436971464 120281.61312516709 102483.41287294339 116119.8215033875 94145.63724088976 95235.89317873416 99098.70080843766 81441.3643808048 89504.34322758534 0.9083127003482591 1.2556970940657946 1.3438634236924512 1.1450105009134113 1.297365215094939 1.0518555172401283 1.0640365567129524 1.1071943241509126 0.9099152224794436 1.0 16.449670070874586 2.640182153148138 7.883825931909431 1.0414786896048522 1.1995516409296125 0.3100991837292397 0.12051931139750928 0.38289648286551087 27.447568804454207 0.03863370924871926 0.036388496272783226 436.6989554743757 -2.640182153148138 0.1580729513247603 ERDQDDHIDWLLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDQDDHIDWLLEK 14 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 0 ; 78.373 0.013253999999999998 226996000.0 258744.0 280320.0 233273.0 237223.0 242223.0 289608.0 284948.0 268523.0 344460.0 276111.0 False True 257350.95105316114 289650.2817429815 266115.81075473584 267255.4074769781 273068.6632817979 269588.080623902 271163.97663293197 288561.5497921659 259572.44852752273 258489.35958947972 0.9955959172241111 1.1205501154979458 1.0295039268825923 1.0339126063116106 1.056401949060775 1.0429368584147862 1.049033418874887 1.1163382131103787 1.004190071652323 1.0 17.979745369354443 1.9384879634617096 24.999922389655126 1.0604983203051812 1.0487094825678784 0.0 0.04314068245982842 1444.121195302568 586919.9776761181 0.017016837705606015 0.010983835836502212 86.79365219649756 -1.9384879634617096 -0.01178883773730277 ERDQGGFGDRNEYGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDQGGFGDRNEYGSR 16 2 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ; 131.18 2.5826e-05 262480000.0 59526.0 83423.0 73123.0 86216.0 79628.0 80368.0 92180.0 73558.0 95814.0 95375.0 False True 59205.51862996035 86199.68412473156 83418.08280349014 97130.9367600744 89768.15380786713 74812.34932592257 87720.90123820373 79047.27147995551 72201.92354182224 89288.08584535429 0.6630841961659194 0.9654108194684362 0.9342577121427945 1.0878375971493421 1.0053766183692672 0.8378760572322773 0.9824479986068365 0.8853059255505182 0.8086400650012249 1.0 16.44618006174314 4.741326343197358 24.77668315414946 0.9433453909463344 0.6630840814889025 0.5333086299155992 0.07916564076437824 186.10529446494283 1667117.0114963418 0.019370310416831172 0.1340952135840554 55122.174702107244 -4.741326343197358 -0.2802613094574319 ERDQLLHILFNLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDQLLHILFNLIK 14 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 0 119.56 0.00010833 18625000.0 29256.0 36739.0 38560.0 32012.0 21190.0 29590.0 32823.0 23099.0 61465.0 39124.0 False True 29098.488946647183 37961.83540580552 43988.912830471694 36064.71591773567 23888.42089702998 27544.512947367683 31235.22609396356 24822.764674345333 46317.7743388033 36627.072824258394 0.79445302894571 1.0364419670649494 1.2009944950156513 0.9846464141641625 0.6522066617676445 0.7520260513181042 0.85279067327696 0.6777163109224776 1.264577558819461 1.0 15.160622787375331 3.4543752610720873 24.75347032592997 0.8316794258801274 1.0264793163512442 0.09454221313100675 0.19048072550652928 338.35755631127466 368218.46497632354 0.05174976011899199 0.07007370964290477 2846.919984691821 -3.4543752610720873 0.1947998904711168 ERDQRPS(ph)SPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDQRPSSPIR 11 2 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 ERDQRPS(0.901)S(0.099)PIR;ERDQRPS(0.5)S(0.5)PIR 160.65 2.1447e-05 1819130000.0 872940.0 1099550.0 990130.0 1009260.0 1007990.0 1084580.0 1056900.0 887470.0 1131730.0 1091360.0 True False 868240.1880327511 1136147.8570579898 1129531.6976357598 1137032.2125182403 1136351.5516751902 1009605.5374267006 1005773.7092499187 953697.5178813488 852830.305905049 1021708.470439695 0.8497924928224404 1.1120078671453566 1.1055322827554348 1.1128734325055711 1.1122072338170577 0.9881542207359933 0.9844038082772096 0.9334340914986469 0.8347100279378432 1.0 19.96255217240052 2.19770567554761 1.6872618459029234 0.9181076100884495 1.065004600530476 0.31142339140597664 0.08446164856180578 0.4117587169428625 2.306567441069211 0.04587459718991708 0.027247800310280776 157.6542473552507 -2.19770567554761 0.14689699044202653 ERDQRPSS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDQRPSSPIR 11 2 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 ERDQRPS(0.022)S(0.978)PIR;ERDQRPS(0.367)S(0.633)PIR 135.02 6.7118e-05 473000000.0 154830.0 184231.0 167822.0 203270.0 188911.0 177032.0 201086.0 177341.0 200532.0 190591.0 True False 153996.41248323006 190363.01746500895 191449.87886502643 229003.9611582574 212967.69608677857 164794.19452850282 191358.70195688258 190575.08593935112 151113.5755911316 178427.31920683564 0.8630764233178614 1.0668938944508675 1.0729852340778312 1.2834579490195253 1.1935823338796185 0.9235928402727999 1.072474231006389 1.0680824370758695 0.8469194978822636 1.0 17.444976999262085 1.270759142974168 16.6626841638304 0.923470601840065 1.0744970576459891 0.19443077205441817 0.1171063137381318 7.484499593113835 3873.9037803741076 0.08036331261506141 0.029301585341098498 18.653448952070104 -1.270759142974168 0.1510264558059241 ERDSASFNPELLTHILDGS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDSASFNPELLTHILDGSPEK 22 1 Q15067-2;Q15067;I3L0T4;I3L2U4;K7ELT1 Q15067-2;K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 ERDSASFNPELLTHILDGS(1)PEK 89.181 0.0015515999999999998 23646000.0 39314.0 43913.0 34705.0 35624.0 39413.0 49917.0 50642.0 50381.0 68830.0 55065.0 True False 39102.337792196005 45374.61765903093 39591.16233873237 40133.99474738901 44432.011930846784 46466.35528197882 48192.252988773165 54140.686049534284 51867.76877474718 51550.7045564817 0.7585218888590242 0.8801939381704489 0.7680042916843974 0.7785343593784653 0.8619089169220704 0.9013718761315435 0.934851490457733 1.0502414373447575 1.0061505312292693 1.0 15.65370452495459 2.379954882436299 1.210935052134947 1.0253954929082345 0.8017813116673816 0.8508476827037119 0.0383742807422565 0.16064053629793293 0.4683487748285457 0.022502775660351356 0.014694121267026265 239.85837243372734 -2.379954882436299 -0.22361418124085286 ERDSASFNPELLTHILDGSPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERDSASFNPELLTHILDGSPEK 22 1 Q15067-2;Q15067;I3L0T4;I3L2U4;K7ELT1 Q15067-2;K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 ; 207.89 4.5349e-23 285610000.0 303190.0 348690.0 292480.0 296070.0 324810.0 370640.0 395040.0 351510.0 511210.0 359760.0 False True 301557.6587275757 360295.9358624438 333658.6417182665 333552.4316432593 366172.6282002979 345018.5291927128 375930.4060006511 377741.4611316134 385229.1453630466 336799.8087939678 0.8953617278092013 1.0697628871958458 0.9906734891360258 0.9903581383779969 1.0872115085561063 1.0244023903344097 1.1161835493517778 1.1215607944798183 1.1437926486434102 1.0 18.3615317938029 3.119286579268677 0.8525543021755215 1.1054750406894696 0.9780514982189389 0.38274406904091895 0.05765357970989216 0.5902397638390542 0.94971403160578 0.028769410569716387 0.0424562992597223 1316.0930001567303 -3.119286579268677 -0.12742354247053067 ERDVIMR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERDVIMR 7 1 P60842;J3KT12;P60842-2;J3KSZ0;J3QL52;Q14240;Q14240-2;E7EQG2 P60842;Q14240 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ;;; 136.8 0.002686 8983280000.0 1529000.0 1714140.0 1557590.0 1560990.0 1556500.0 1591620.0 1656060.0 1397340.0 1936100.0 1612630.0 False True 1520768.0338878683 1771194.11368049 1776885.133185018 1758611.1739480898 1754711.0489017062 1481595.0556704768 1575950.0510364447 1501616.6063487472 1458974.0974108358 1509710.572757996 1.0073242258015536 1.173201105987359 1.1769707156113622 1.1648664357800667 1.162283076348955 0.9813768826986774 1.0438756139578727 0.9946387297305189 0.9663932436702269 1.0 20.525840565716233 2.738484005045542 24.999981535823817 1.0006257552605073 1.1427208330458916 0.6622698502558473 0.04975603009485495 4.155565671678037 1355834.329629619 0.01554985125171146 0.01554931805142679 547.6259316677755 -2.738484005045542 0.14209507778538422 ERDVYEELLTQAEIQGNINK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERDVYEELLTQAEIQGNINK 20 1 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;; 224.89 4.9928e-25 357490000.0 422470.0 392280.0 362715.0 336742.0 345311.0 411690.0 406590.0 403570.0 509800.0 440410.0 False True 420195.4684608291 405336.80266173196 413782.1192247027 379373.50267306465 389284.30903135065 383230.8393140185 386921.68837536604 433686.4426869362 384166.6209700143 412302.65674602945 1.0191432472860864 0.9831049983056783 1.003588292373252 0.9201335389569208 0.9441712360130202 0.9294891338769165 0.9384409293624862 1.0518642933559332 0.931758781284433 1.0 18.653344231956684 -0.39090766037097346 6.81653050218634 1.0000048127034942 0.9717470188717892 0.042997806981488806 0.04210286125048042 0.0 0.0 0.042424720571455486 0.0099996025353402 0.4065297562739642 0.39090766037097346 -0.028257793831705014 ERDWENGSNASSPASVPEYTGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDWENGSNASSPASVPEYTGPR 23 1 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 0 104.45 2.5458000000000006e-05 0.0 85191.0 72680.0 72429.0 63487.0 63462.0 79049.0 72423.0 73041.0 100170.0 89789.0 False True 84732.34112160996 75099.1098640122 82626.37363584638 71524.44769053125 71543.50953125606 73584.52869133047 68919.62280727307 78491.69031468274 75484.44570923173 84058.58914776961 1.008015266264533 0.893413875076975 0.9829616993760686 0.8508880343541795 0.8511148028607423 0.8753957143150902 0.8198998282747382 0.9337735870952982 0.8979980091806551 1.0 16.359107621828088 6.887875760739875 0.8592701764155266 0.8888220388727063 5.802948985099372 0.24500718200538552 0.05514202674436827 108.62223305999083 2.4186627838273766 0.016927935123095855 984.174840376523 7724595.748400463 -6.887875760739875 4.9141269462266655 ERDYIAPWER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDYIAPWER 10 1 Q9H0W8-2;Q9H0W8;M0R2N0;M0QZC7;M0QZH1;M0QX70;M0QYR7 Q9H0W8-2 SMG9 Protein SMG9 0 134.99 0.00014231 270600000.0 152360.0 345040.0 318620.0 363930.0 343640.0 253860.0 243040.0 210520.0 181890.0 248680.0 False True 151539.71068878722 356524.447818915 363478.92650531343 410003.5006854163 387400.5170861439 236311.2557221618 231283.2266970387 226230.07139889945 137065.64670112962 232809.02949434065 0.6509185275928956 1.5314030069765046 1.561275038578988 1.761115114718448 1.6640270264756256 1.0150433436169892 0.9934461184748032 0.9717409667926943 0.5887471246232807 1.0 17.82878748867133 2.6041460593163763 4.953354697819612 0.9106589266289956 1.4627257241390386 0.42305391048965213 0.30456146710085946 0.22633616274071466 8.18425390085969 0.10259973976458832 0.09607187679982573 401.9259614507866 -2.6041460593163763 0.552066797510043 ERDYPFYER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERDYPFYER 9 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 126.19 0.00043809 179320000.0 86463.0 124730.0 102500.0 105530.0 105380.0 115020.0 118600.0 91233.0 130700.0 114780.0 False True 85997.4928149424 128881.5626491228 116931.10905402865 118890.08717976524 118799.5183638045 107068.93812795634 112862.86490400249 98041.26973178712 98490.7362902723 107454.64213189797 0.800314356911473 1.1994043262544563 1.0881903911652189 1.1064211356623432 1.1055782794193383 0.9964105412638368 1.0503302850840641 0.9123967823692888 0.9165796315191046 1.0 16.713368284201152 1.780279475633516 6.349748902056741 0.9361598398014384 1.0595045712267526 0.18541911533976196 0.1004950839403858 0.2733420153334865 25.095697653756726 0.04516249307761037 0.025279236988072277 60.2947467857362 -1.780279475633516 0.12334473142531421 ERECNPPNSQPASYQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERECNPPNSQPASYQR 16 1 Q13427;E9PG73;C9JM79;Q13427-2 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 0 ; 210.39 8.9396e-12 161804000.0 47636.0 61574.0 58902.0 62970.0 61396.0 62742.0 60750.0 55786.0 78550.0 66905.0 False True 47379.53306885713 63623.45336773098 67194.889614638 70941.99554354032 69214.41667739754 58404.79321878148 57811.290412463364 59949.034595568155 59192.40501607419 62635.065619747664 0.7564378291945023 1.0157801023788136 1.0727998597873698 1.1326242711107442 1.105042614588968 0.9324615954480223 0.9229860277217711 0.957116177693719 0.9450362098353408 1.0 15.934682941375055 2.6989034994548144 24.965225079261806 0.9472260689156843 1.0260699474216648 0.09427817861809085 0.0981197354304406 1142.2158178305576 719054.3663062031 0.03305570355174172 0.031165696173252815 499.92343928810476 -2.6989034994548144 0.07884387850598051 EREDEIATMECINNGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EREDEIATMECINNGK 16 1 P49189-3;P49189;P49189-2 P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase 0 ;;; 269.51 6.4119e-28 3622740000.0 1285458.0 1110010.0 1055526.0 978726.0 1031588.0 1335924.0 1226422.0 1237645.0 1578154.0 1359362.0 False True 1278537.236955809 1146956.0118347856 1204134.8860035394 1102632.6112489616 1162954.6170988856 1243574.7183068348 1167095.2824729898 1330004.3545339687 1189239.092880173 1272606.3533516407 1.0046604227525253 0.9012653510758201 0.9461958781144152 0.8664365130230395 0.9138368781799907 0.9771872622132164 0.9170905672435405 1.045102714622758 0.9344909285955512 1.0 20.279354798545707 1.759352288238475 24.999999999997947 0.9964973196659395 0.9301899535863957 0.28237625495557883 0.0442385422345093 11.221368539297858 13504.286723237594 0.019646887972448717 0.010895373397262756 57.45823592875754 -1.759352288238475 -0.0663073660795438 EREDLYAK ddPTM_BT-474_Trastuzumab_2h_R1 1 EREDLYAK 8 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 65.305 0.058929 113390000.0 93805.0 91314.0 97538.0 95850.0 104400.0 118230.0 104260.0 92171.0 111680.0 117320.0 False True 93299.96430271519 94353.33128952136 111270.50258450596 107984.60017227805 117694.72117271966 110057.03838348374 99216.5454881223 99049.26805485458 84157.96043532994 109832.5371572946 0.8494747250452515 0.8590653892880122 1.013092344622359 0.9831749585974686 1.071583377921657 1.0020440320509725 0.9033438364992988 0.9018208139269607 0.7662388816057731 1.0 16.74494598089084 -0.43497951809122604 5.992625863514843 1.0000003455171602 0.9330011935825648 0.05599847228503618 0.08660747790488298 0.0 0.0 0.08839311762199524 0.02083445762691099 0.36729962243119296 0.43497951809122604 -0.06699915193459538 EREEATYLLEQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EREEATYLLEQQR 13 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ; 156.2 4.0559e-05 782440000.0 659930.0 400370.0 286690.0 312080.0 313600.0 492080.0 455230.0 443130.0 893770.0 394830.0 False True 656377.0102051155 413696.0734212238 327053.4600458487 351589.29600171675 353535.10114717385 458063.6678317237 433208.7857525218 476198.61076854594 673512.3594044122 369631.6113690306 1.7757599458932796 1.1192118333412786 0.8848092262307268 0.9511883864572912 0.9564525605311759 1.2392437598482475 1.1720014534147012 1.2883059676763458 1.8221178565055005 1.0 18.49572861759543 1.5620894539816985 4.150603569117439 1.449778490283378 1.1342095681199467 0.0947911480147059 0.29956654583471715 0.3122660055220612 12.042801431773805 0.17841821401937968 0.07653171514145105 36.482908500549904 -1.5620894539816985 -0.31556892216343124 EREEIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 EREEIEK 7 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 ;;; 135.83 0.0027717 7869400000.0 5200500.0 4738500.0 4123710.0 3885310.0 4118150.0 5038800.0 5364600.0 4913800.0 6771200.0 4950800.0 False True 5172501.085829867 4896218.108016261 4704292.524070134 4377189.847630186 4642571.992312604 4690479.616059351 5105093.803237877 5280492.707770812 5102528.489431469 4634835.705406873 1.116005272807355 1.0563951818841102 1.014985821090106 0.9444110052323702 1.0016691609794726 1.0120055842729367 1.1014616542464308 1.1393052620205575 1.100908168865403 1.0 22.144086768758424 2.2346909754751656 24.67504749693637 1.1017156796771834 1.0206307796582064 0.21628429220519962 0.05330142319497094 99.5679896882651 634892.7616636291 0.020236956470876234 0.015516565505954231 171.66864351959342 -2.2346909754751656 -0.08108490001897706 EREEQETTSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 EREEQETTSSK 11 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 167.3 1.7699e-05 395840000.0 463730.0 436990.0 388570.0 327740.0 330480.0 446800.0 478590.0 475270.0 668500.0 483990.0 False True 461233.32920524606 451534.9479839665 443277.27848901384 369231.8503960604 372564.66909157496 415913.76765406854 455438.7733086555 510737.060772159 503757.13244106446 453101.3438353145 1.0179473874455938 0.996542945915611 0.9783181721264739 0.8148990406222729 0.822254610719028 0.917926581575617 1.0051587343651547 1.1272027057986236 1.1117979218003853 1.0 18.78947424412649 2.0187763092325746 3.542540608741136 1.0905019312615016 0.9213004078681413 0.4922551828660032 0.07045993576832814 0.1988091731418644 5.201471760682318 0.03505723203435549 0.022047286209789095 104.41822568391821 -2.0187763092325746 -0.16920152339336036 EREES(ph)EDELEEANGNNPIDIEVDQNK ddPTM_BT-474_Trastuzumab_2h_R1 5 EREESEDELEEANGNNPIDIEVDQNK 26 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK 361.29 7.451899999999996e-111 8521070000.0 4335140.0 3550880.0 3296560.0 3190460.0 3033000.0 4554230.0 4443990.0 4155570.0 5806580.0 4451890.0 True False 4311800.087919335 3669068.8942477144 3760686.9937868216 3594371.9088747622 3419234.5720005645 4239406.79960427 4229017.226009595 4465679.734956897 4375626.163185687 4167766.568745218 1.0345589218585916 0.8803441444544132 0.9023266854695858 0.862421599095679 0.8203997310314783 1.0171891178830152 1.0146962782713662 1.0714802907739074 1.0498731373295334 1.0 21.990843045706306 2.597988488359501 6.07194468265517 1.0392969172103437 0.8973077615794406 0.5899350337691072 0.054458513774435564 0.15940073371341676 7.301266275000246 0.017983366152096756 0.016886565761117224 396.26753043832963 -2.597988488359501 -0.14198915563090309 EREKEPS(ph)RER ddPTM_BT-474_Trastuzumab_2h_R1 2 EREKEPSRER 10 3 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H7C477 Q8NI27 THOC2 THO complex subunit 2 1 EREKEPS(1)RER;EREKEPS(1)RER 131.08 0.0014342 2689700000.0 1281760.0 1048290.0 859180.0 970240.0 1092420.0 1343880.0 1361870.0 1181980.0 1985560.0 1355000.0 True False 1274859.1465769238 1083181.698945314 980145.0758735647 1093072.2845190517 1231533.211719374 1250980.7387532443 1295991.1452513826 1270185.349572824 1496245.3431408827 1268522.7399261347 1.0049951068682916 0.8538922203384284 0.7726665396086143 0.861689152362141 0.9708404689624132 0.9861713151678212 1.021653853305655 1.001310666016745 1.1795179511153329 1.0 20.274717951149842 2.80432775517613 1.372043883168109 1.0475176640052248 0.8657025481282109 0.5319715463170586 0.07300060935698735 0.3350366103891616 1.288527892383115 0.031583849393594494 0.03183018133980511 637.2762818036683 -2.80432775517613 -0.18181511587701393 ERELLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERELLGK 7 1 Q9BSJ8-2;Q9BSJ8 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 0 ;; 133.12 0.0030123000000000003 1030560000.0 703680.0 853810.0 722400.0 710570.0 932090.0 1142640.0 929640.0 878320.0 1300480.0 1115140.0 False True 699891.4650661978 882228.5497109566 824107.6407866374 800528.0891436167 1050786.1365697351 1063651.9862852385 884669.7616303292 943864.6984185901 979994.1295392007 1043970.8104806133 0.6704128679076654 0.8450701311321193 0.7893972058541011 0.7668107969178538 1.0065282726496771 1.0188522280575687 0.8474085221051855 0.9041102384692755 0.9387179408666038 1.0 19.993649943910533 3.2511534130706234 24.99896536578654 0.9407769172381256 0.7749671183422718 0.6682971996040887 0.06333522289905058 156.0286602803514 309743.0933899441 0.01824526407766688 0.02453809301924626 1783.0084979943636 -3.2511534130706234 -0.1658097988958538 EREMAEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 EREMAEMR 8 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 78.932 0.026765 423370000.0 177580.0 222830.0 223930.0 205530.0 181280.0 177450.0 229320.0 168110.0 277340.0 205020.0 False True 176623.9290109929 230246.76184642053 255457.39756554764 231550.07692653447 204364.933469259 165183.29917236886 218226.91551252856 180655.22184528288 208993.2731656018 191935.4480735472 0.9202256841233043 1.1996052014226832 1.3309547565578383 1.2063955837788103 1.0647586754842129 0.8606190301495155 1.136980780272057 0.9412290624713479 1.0888727187357192 1.0 17.55026165828431 3.0843434510357954 4.970305400946996 1.003850963842287 1.1773292924752097 0.2812705460253586 0.1186518268001591 0.24985831910893624 10.785083493396552 0.03467928707469853 0.041684545333748935 1214.3488085175265 -3.0843434510357954 0.17347832863292267 ERENMDT(ph)DDER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERENMDTDDER 11 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 ERENMDT(1)DDER 87.566 0.022034 186830000.0 153240.0 185350.0 156700.0 174560.0 155590.0 184480.0 169280.0 163500.0 199270.0 182830.0 True False 152414.9728665646 191519.26270355892 178761.99793918343 196659.27810195982 175403.46424581853 171727.33181920878 161091.27968760184 175701.20023617725 150162.5785811981 171161.63287136177 0.890473935716152 1.1189380440621126 1.0444046071559379 1.148968228468357 1.024782606377942 1.0033050569707533 0.9411646581373269 1.0265221083058214 0.8773144779125487 1.0 17.384999821797713 2.6915481797898133 2.736193646183204 0.9701430266299023 1.0569025155544967 0.21569900323232738 0.07386822713885943 0.41247272318308487 6.1261671286401 0.02458114145451822 0.023797743455998242 491.5279063299189 -2.6915481797898133 0.0867594889245944 ERENMDTDDER ddPTM_BT-474_Trastuzumab_2h_R1 2 ERENMDTDDER 11 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 ; 162.22 2.3147e-05 799500000.0 816540.0 882000.0 797850.0 781850.0 854190.0 897530.0 831840.0 819980.0 1042480.0 889270.0 False True 812143.8393661219 911356.8368197414 910180.3449634806 880832.1298351127 962966.0333192085 835485.8636583611 791600.7212626105 881171.0713740716 785574.7725163207 832516.0272576497 0.9755293745411306 1.094701851953286 1.0932886757287559 1.0580362431419112 1.1566936873170692 1.003567302374339 0.950853431459072 1.0584433722876112 0.9436151939369193 1.0 19.66711852106222 2.5169633752881158 24.66133255782885 0.9959182310792888 1.07705188832266 0.40288524781823265 0.05126293414801996 461.70344808689856 285782.83621935867 0.01606807760254093 0.01514688175644591 328.8238994888686 -2.5169633752881158 0.0811336572433713 EREQCCYNCGKPGHLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EREQCCYNCGKPGHLAR 17 2 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 117.18 0.00013825 59139000.0 29701.0 40878.0 36389.0 49257.0 50235.0 39360.0 48862.0 35926.0 68043.0 56436.0 False True 29541.093116091335 42238.59951872719 41512.25490114196 55492.931149565986 56632.12948382735 36639.13584347387 46498.3583890335 38606.980548531545 51274.71437948739 52834.206162709525 0.5591281720996405 0.7994555532574514 0.7857079327225963 1.0503220390719714 1.0718837964447057 0.6934737645274557 0.8800805721550166 0.7307194212332165 0.9704832929935677 1.0 15.68918464782566 4.787669702853345 1.643403804557921 0.8851558731298311 0.41881113424269684 0.412701510674803 0.12288819745053926 1.2443992966118906 2.956018262992765 0.03381615813342342 0.9565596731540973 61329.539373523236 -4.787669702853345 -0.4663447388871343 EREQELFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EREQELFNR 9 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 0 ; 145.25 0.0015743 214070000.0 206132.0 244240.0 248520.0 233370.0 260760.0 269950.0 269760.0 257550.0 320810.0 287630.0 False True 205022.208215418 252369.38075380225 283509.45582543616 262914.6180720345 293966.24035439093 251288.99189394785 256710.67821672626 276769.68881240074 241750.67413375867 269273.20714756794 0.7613910436438672 0.9372242542329805 1.0528691615057952 0.976386105610393 1.0917025257299016 0.9332120137605657 0.953346532081979 1.0278396864814128 0.8977895598847074 1.0 18.038711162359146 4.689150745944338 3.2339785985540948 0.9935007758794726 0.7404521527254403 0.617336789800494 0.05425929273459409 0.17510146810506078 2.9891582019636727 0.012600319579585881 0.10328796662298297 48882.20026383665 -4.689150745944338 -0.2530486231540323 EREQPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EREQPPR 7 1 Q15233;Q15233-2;H7C367;Q8WXF1;Q8WXF1-2 Q15233;Q8WXF1 NONO;PSPC1 Non-POU domain-containing octamer-binding protein;Paraspeckle component 1 0 ; 157.58 0.0013374 329500000.0 181699.0 237260.0 204159.0 186518.0 211353.0 215262.0 218013.0 188139.0 248840.0 218330.0 False True 180720.75277265662 245157.05567330102 232902.81261816062 210131.15967587876 238267.55176262304 200381.444612243 207466.87829946325 202178.88753048435 187516.71628516764 204395.99247828266 0.8841697460964575 1.1994220273146954 1.1394685864152 1.0280590980677151 1.1657153786316985 0.9803589697754657 1.0150241978032268 0.9891528942377191 0.9174187517648691 1.0 17.64100738456564 2.708304457060613 24.014825330486484 0.9834045784702605 1.089858567843794 0.26715588116428524 0.08486358886157314 550.8292230638652 437201.5556921365 0.026196053028494707 0.024701226332967376 510.86300900158494 -2.708304457060613 0.10645398937353345 EREQQIEEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EREQQIEEHR 10 1 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ; 147.91 1.5655e-05 650290000.0 430880.0 500970.0 447020.0 475290.0 450110.0 526110.0 517270.0 432570.0 565670.0 513090.0 False True 428560.18995526846 517644.4836072399 509956.5304325067 535461.6652674179 507428.84048901236 489741.2540297264 492247.67393670615 464850.5699459527 426268.20808965893 480344.15692155034 0.8921940316747952 1.0776533369839272 1.061648243419338 1.11474587033411 1.056385995701589 1.019563258910862 1.0247812258016076 0.9677448205576318 0.8874224906191103 1.0 18.873708912709258 1.716854749348391 2.51605430841327 0.939595889646677 1.0432817496729112 0.28630991378109005 0.06060612375778672 0.2913166901487191 3.944369241844488 0.0381743825837434 0.016602072592868763 52.102042564598904 -1.716854749348391 0.10368586002623426 ERESLNASIVDAINQAADCWGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERESLNASIVDAINQAADCWGIR 23 1 A0A087WYB4;Q9UJZ1 A0A087WYB4 STOML2 Stomatin-like protein 2, mitochondrial 0 163.18 1.4366e-11 188490000.0 180590.0 228260.0 209410.0 192970.0 249520.0 342750.0 221440.0 217100.0 285660.0 236590.0 False True 179617.72350543502 235857.49611391622 238893.10777565037 217399.98221434004 281294.89297909045 319056.4992467144 210728.10121705176 233301.10441146232 215262.92064788987 221490.6236451106 0.8109495587191646 1.064864472510698 1.0785698457304602 0.9815313110620659 1.2700081310430678 1.4404966404263297 0.9514086770313881 1.053322712140065 0.9718827691451208 1.0 17.75688610095065 3.352433802760456 21.04519132861472 1.1172764296457276 0.9964822152029101 0.14334069015700146 0.15503631805546542 6.678460176095526 1204.0544321495142 0.04576913035010002 0.061971676943784394 2251.3022363494133 -3.352433802760456 -0.12079421444281746 ERESLQQMAEVTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERESLQQMAEVTR 13 1 K7ELL7;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;; 194.01 1.2559e-06 1593800000.0 860440.0 1213840.0 1154100.0 1177750.0 1151420.0 1164410.0 1184300.0 960670.0 1161980.0 1124250.0 False True 855807.4866438702 1254241.9306182254 1316587.24838297 1326853.0292425728 1298046.5119989733 1083917.077426307 1127010.8845346577 1032360.073583416 875625.5987342834 1052499.402481151 0.8131192137747524 1.191679470469521 1.2509149604068763 1.260668676974698 1.233299048853588 1.0298505394597774 1.0707947974866818 0.9808652348397929 0.8319487846454761 1.0 20.005387983577627 1.9816940234786182 1.4035031030049034 0.9226685820533354 1.1565340613312913 0.30742579279675075 0.1309337377755662 0.4937875280292606 1.8088259888587723 0.09331104960998549 0.04347016723332069 95.87249363493954 -1.9816940234786182 0.23386547927795598 ERESSANNSVS(ph)PSESLR ddPTM_BT-474_Trastuzumab_2h_R1 6 ERESSANNSVSPSESLR 17 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 ERESSANNS(0.068)VS(0.82)PS(0.111)ESLR;ERESSANNS(0.003)VS(0.996)PS(0.001)ESLR;ERESSANNS(0.006)VS(0.957)PS(0.036)ESLR;ERESSANNS(0.005)VS(0.963)PS(0.031)ESLR;ERESSANNS(0.012)VS(0.984)PS(0.004)ESLR;ERESSANNSVS(0.989)PS(0.011)ESLR 368.96 2.7101999999999986e-104 3951100000.0 1236171.0 1400869.0 1217468.0 1225317.0 1278472.0 1381020.0 1365111.0 1200898.0 1346420.0 1255330.0 True False 1229515.5926875083 1447496.0778218051 1388876.9119784425 1380442.0065654193 1441277.8311027717 1285553.3379713988 1299075.365699562 1290515.1067964823 1014612.8321036624 1175213.7646579172 1.046205915606679 1.2316874779314249 1.1818079006100806 1.1746305634594403 1.2263963156713884 1.093888938873686 1.1053949543193944 1.098110952752606 0.8633432168819068 1.0 20.164491767954747 1.427398510284062 3.1678509998460735 0.933484791889982 1.1560426809135265 0.6357992647968973 0.06457744113662187 0.14275663002298875 2.556167881740629 0.0486412379966298 0.01639076366982403 26.75460295282583 -1.427398510284062 0.22255788902354445 ERETPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERETPPR 7 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 117.4 0.004778800000000001 205320000.0 128340.0 143760.0 109080.0 144820.0 152750.0 134400.0 136960.0 131370.0 173580.0 119780.0 False True 127649.03169991447 148544.96469524497 124437.51585964356 163154.19715127084 172201.80707981728 125109.24434356923 130334.72156199144 141173.49648334325 130803.53485283461 112135.53785118277 1.1383459173247998 1.3246912400989403 1.1097063272197167 1.4549731537186357 1.5356577440093042 1.115696653719217 1.1622963073041228 1.2589541120380348 1.1664770808557274 1.0 16.774884042112273 EREVDEDS(ph)EPER ddPTM_BT-474_Trastuzumab_2h_R1 4 EREVDEDSEPER 12 1 Q53GS9;B9A018;Q53GS9-3;F8WC91 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EREVDEDS(1)EPER;EREVDEDS(1)EPER;EREVDEDS(1)EPER;EREVDEDS(1)EPER 198.15 4.9111e-07 2036800000.0 909260.0 921950.0 811420.0 862360.0 796620.0 984090.0 921840.0 830820.0 981600.0 895520.0 True False 904364.6451882822 952636.5484194556 925660.8830109258 971534.6875802362 898064.8350633327 916062.1745986849 877247.0774292211 892820.0072184759 739697.8327661167 838367.1469067548 1.0787214748634082 1.136299951559779 1.1041235172755166 1.1588415542818171 1.0712070939049065 1.092674227489226 1.0463757801888087 1.0649510903577637 0.882307752033594 1.0 19.677222657529537 1.4257658136543678 3.2594337375682 0.9426994211405159 1.0998319503577152 0.6811648742977721 0.04162412026022031 0.1277572053830576 2.4095072629711716 0.03102621899298036 0.010511677075162807 26.65420991343174 -1.4257658136543678 0.15713252921719933 EREVEER ddPTM_BT-474_Trastuzumab_2h_R1 5 EREVEER 7 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;;;; 202.28 0.00028494 1646150000.0 1332818.0 1730529.0 1578120.7 1609364.0 1598992.0 1375716.0 1490125.0 1390690.0 1592818.0 1594830.0 False True 1325642.2559779997 1788128.611638128 1800306.3772889774 1813109.3173881923 1802614.1532318927 1280615.9910071273 1418041.9609197055 1494470.349580731 1200289.3465677064 1493046.5839973425 0.8878773577371242 1.1976375223676952 1.2057938423254058 1.2143688862901678 1.2073395248028653 0.8577200502200852 0.9497640436128746 1.0009535975626271 0.8039195557811496 1.0 20.509827748496225 2.741613243692963 24.99792659910469 0.9313389869306005 1.153158429231739 0.5146309286004451 0.10647099208582045 221.27254158594843 1812002.430268807 0.03300852701503726 0.033669584891437954 551.5860114708255 -2.741613243692963 0.22181944230113848 EREWQK ddPTM_BT-474_Trastuzumab_2h_R1 3 EREWQK 6 1 O75937;S4R3J5 O75937 DNAJC8 DnaJ homolog subfamily C member 8 0 ;; 130.05 0.014528 1132680000.0 735347.0 802665.0 711789.0 697279.0 677885.0 827187.0 823958.0 761357.0 1006960.0 844810.0 False True 731387.9734567328 829381.2193037617 812002.704219102 785554.449906374 764209.6366108157 770005.5096787501 784100.0037147735 818173.3254325103 758808.2005727064 790893.5025217702 0.9247616412635791 1.048663589546852 1.0266903213011929 0.9932493406528533 0.9662611137582079 0.9735893735674669 0.9914103494524413 1.0344924099436374 0.9594315772644996 1.0 19.5931239166347 ERFS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 ERFSPPR 7 1 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR 94.309 0.0086573 8592860000.0 598409.0 684020.0 608376.0 617292.0 601596.0 635956.0 560608.0 545154.0 633597.0 581190.0 True False 595187.2324334899 706787.1922011788 694030.0527010126 695441.1039076259 678205.6846611452 591993.8585993969 533489.2493094697 585836.1597159202 477455.5091148261 544097.956618207 1.093897202137688 1.2990072533889896 1.2755608512384338 1.2781542283857834 1.2464771764196156 1.0880280864844312 0.9805022107146389 1.076710824935152 0.8775175559974693 1.0 19.05350688474541 2.5788820425202617 2.722504825682344 0.9989637035174144 1.2475525274901509 0.7432879132181924 0.07047266860782721 0.14086623691584543 2.0409832146039926 0.0248739730692693 0.022564044508492462 379.21197430740744 -2.5788820425202617 0.24858882397273652 ERFS(ph)PPRHELS(ph)PPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 ERFSPPRHELSPPQK 15 2 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 2 ERFS(1)PPRHELS(1)PPQK;ERFS(1)PPRHELS(1)PPQK;ERFS(1)PPRHELS(1)PPQK;ERFS(1)PPRHELS(1)PPQK 111.97 0.00042915 1612700000.0 1017790.0 1025530.0 949251.0 918457.0 973190.0 1185540.0 1137690.0 1039580.0 1401780.0 1233160.0 True False 1012310.3317270998 1059664.1461040233 1082897.2897623994 1034733.5620284833 1097119.9779509485 1103586.4102609775 1082655.588302147 1117158.7384802783 1056330.101889656 1154458.6730386075 0.8768701343484524 0.9178883322994326 0.9380130402694675 0.89629328982821 0.9503328300728687 0.9559340979753471 0.9378036768111672 0.9676905415244069 0.9150003603934379 1.0 20.13878509820111 7.9999999999959295 0.09070278465985807 1.0301525374546656 0.6548094630915486 0.5811556874756515 0.02199526562589704 106.65130415090678 0.6941243140976477 0.3717392399580148 4.981388961734201 99999999.99906273 -7.9999999999959295 -0.375343074363117 ERFS(ph)PPRHELS(ph)PPQKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERFSPPRHELSPPQKR 16 3 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 2 ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR 103.67 0.0020397 8563000000.0 598760.0 701730.0 562340.0 648590.0 690560.0 755590.0 811470.0 730490.0 1057300.0 880030.0 True False 595536.3426884898 725086.6588452574 641512.584053098 730701.4274985695 778498.7227302046 703357.8417675412 772216.0959835672 785002.8731530587 796742.5820941472 823865.7319684121 0.7228560669292692 0.8801029472519171 0.7786615696715181 0.8869180973855403 0.9449339771302117 0.8537287260231728 0.9373081875107955 0.9528286499761306 0.9670781914797437 1.0 19.65204971038043 7.545305117357688 0.19441438830749683 1.0111694704057794 3.0833570923220383e-18 0.7419505064744382 0.0421784409634551 21.766872093824198 0.3009080714312769 0.07828090305766153 6.41929560179231 35099838.43097942 -7.545305117357688 -1.0111694704057794 ERFS(ph)PPRHELSPPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 ERFSPPRHELSPPQK 15 2 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK 114.4 0.00031785 3708270000.0 2211170.0 2324230.0 2265500.0 2244480.0 2104460.0 2851130.0 2753510.0 2495210.0 3099620.0 2638700.0 True False 2199265.3064040816 2401590.590523296 2584462.7079209927 2528630.9378682817 2372450.50688833 2654038.0939381015 2620312.201870324 2681415.2406196445 2335760.1837800615 2470295.9068952706 0.8902841559447723 0.9721874143983321 1.0462158402590764 1.0236145924098332 0.9603912228758396 1.074380638582591 1.0607280668507433 1.0854631759438544 0.94553862039779 1.0 21.236252436170897 4.588921975526993 2.4074262785836837 1.0318287707153941 0.8786798957503485 0.45914870294046617 0.044259017772059144 0.33918556675944816 2.980689596837953 0.011373657630300335 0.0934230628460071 38808.06379404728 -4.588921975526993 -0.1531488749650456 ERFS(ph)PPRHELSPPQKR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERFSPPRHELSPPQKR 16 3 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR 187.86 9.073e-10 7076200000.0 660310.0 950290.0 820740.0 866040.0 838680.0 958510.0 1028730.0 859840.0 1140320.0 1021780.0 True False 656754.9643273385 981919.8281875651 936293.0580000334 975680.5752029193 945480.9267541814 892250.4597898412 978966.3997697694 924005.6269790512 859303.4155051521 956569.12561013 0.6865734495752615 1.026501694335227 0.9788033430441695 1.0199791620711147 0.9884083663594346 0.9327610895038407 1.0234141721282857 0.9659580287934666 0.8983181586140585 1.0 19.86750970183883 4.743918166392326 24.906037356961516 0.9815411882390273 0.686573318739935 0.8375057332938249 0.038982130448977796 197.8095184095098 919542.0455228685 0.00902301647901667 0.07720170778619447 55452.12153208296 -4.743918166392326 -0.29496786949909226 ERFTEHEVQIYVGEIVLALEHLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERFTEHEVQIYVGEIVLALEHLHK 24 1 O75582-3;O75582;O75582-2;A0A3B3ISL8;G3V2D1 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 0 ; 162.11 6.2038e-12 110316000.0 161638.0 200931.0 159794.0 153557.0 179065.0 195746.0 241952.0 77169.0 291178.0 145248.0 False True 160767.75896766988 207618.86686964557 182291.60624565347 172997.30045544603 201867.86634859277 182214.53975652053 230247.85741360206 82927.74263624196 219421.08348530185 135978.14828693095 1.182305840997553 1.5268546416115603 1.3405948569103567 1.2722433908307091 1.4845610775830411 1.340028100485859 1.6932710168088934 0.6098608024963983 1.613649591861597 1.0 17.053015303184416 1.7532403593340458 24.99999999999997 1.0432116553752082 1.4032265677174567 0.24651006943152032 0.2636217274711276 5.8499793173021954 9975.854915781232 0.11200645424112969 0.06211360536162785 56.65527596749257 -1.7532403593340458 0.36001491234224847 ERGS(ph)PLLGDHAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERGSPLLGDHAVR 13 1 Q9C073;D6RJ87;D6RFX7 Q9C073 FAM117A Protein FAM117A 1 ERGS(1)PLLGDHAVR 81.656 0.008742399999999999 159180000.0 20235.0 32578.0 28856.0 33830.0 27333.0 30135.0 31023.0 20016.0 28484.0 30356.0 True False 20126.05700831985 33662.33903618313 32918.67397915173 38112.87453133195 30813.69553461635 28051.838380159705 29522.29897063129 21509.69555918856 21464.499866045284 28418.65409092086 0.7081988099763559 1.1845155976945974 1.158347396531651 1.3411217297411768 1.084277089127196 0.9870924319783904 1.0388352268963723 0.7568864975227817 0.7552961444751433 1.0 14.794550609628608 2.0160501892377694 1.9987132136495391 0.8159647961764052 1.1051273871543537 0.2740144925003217 0.16791443945722107 0.3761696122398692 2.8151929427634745 0.09633849221796216 0.05072867995696336 103.76483247082561 -2.0160501892377694 0.2891625909779485 ERGT(ph)PPVDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERGTPPVDPK 10 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 ERGT(1)PPVDPK 86.262 0.087113 855630000.0 1021400.0 952780.0 847260.0 822810.0 856150.0 1087900.0 1121600.0 1089600.0 1546200.0 1151500.0 True False 1015900.8958882083 984492.7063323271 966546.8434840629 926977.6616353911 965175.6277013789 1012696.0336411386 1067343.9230719171 1170911.4848766902 1165159.7280185106 1078010.2841512507 0.9423851616481164 0.9132498277671324 0.896602618448166 0.8598968630111241 0.895330630784557 0.9394122194654794 0.9901055108321796 1.0861783993077425 1.080842868707765 1.0 20.039939510701455 2.133251037164551 2.1332867420763804 1.063590107406803 0.9010402219255472 0.8276455476110767 0.030555712936308457 0.11506129415044485 1.0290463517630002 0.01563883495605821 0.009423722768591925 135.90988254960874 -2.133251037164551 -0.16254988548125582 ERGTGDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERGTGDVK 8 1 P43487;F6WQW2;P43487-2;C9JXG8;C9JJ34;C9JGV6;C9JDM3;C9JIC6 P43487 RANBP1 Ran-specific GTPase-activating protein 0 72.87899999999998 0.041051 78281000.0 146640.0 175150.0 116450.0 141050.0 148330.0 141790.0 183580.0 164510.0 191700.0 177820.0 False True 145850.50653323578 180979.7618695892 132845.14779845512 158906.91553781772 167218.94627921004 131988.3910377583 174699.5340562967 176786.5715648535 144458.1036483949 166471.3753606389 0.8761296422118778 1.0871524397363794 0.7980059485341737 0.9545599968376921 1.0044906874647466 0.792859377486504 1.0494268679995737 1.0619637831541193 0.8677654241484155 1.0 17.344914602631167 ERHAS(ph)EMR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERHASEMR 8 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 1 ERHAS(1)EMR;ERHAS(1)EMR;ERHAS(1)EMR 66.92 0.0366 971110000.0 406870.0 459080.0 376800.0 426100.0 410890.0 415640.0 441180.0 398160.0 515870.0 444400.0 True False 404679.4571275071 474360.20028027915 429850.16479568835 480044.2163109826 463214.4059641643 386907.78511131793 419838.4379287337 427872.72101551364 388740.75080384704 416038.01153001795 0.9726982773503345 1.140184759887146 1.0331992579593268 1.1538470115881383 1.1133944330246432 0.929981815095282 1.0091348056989777 1.0284462216372308 0.9343875800536044 1.0 18.666355821410338 2.750316030609885 24.904376087879058 0.988370500530934 1.0870667942539272 0.4422803628965942 0.05696665137012355 672.9348070643842 1425641.613762559 0.016881229278786884 0.017771692085607235 562.7506827951385 -2.750316030609885 0.09869629372299316 ERHPGSFDVVHVK ddPTM_BT-474_Trastuzumab_2h_R1 6 ERHPGSFDVVHVK 13 1 P62701;C9JEH7;P22090 P62701 RPS4X;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 0 ;;;;; 202.25 6.1544e-08 5133880000.0 3554690.0 4327760.0 4162340.0 4113110.0 3958490.0 4705000.0 4523980.0 3379390.0 6084010.0 4928540.0 False True 3535551.9440031904 4471806.875413832 4748361.29229215 4633829.304273331 4462580.237691563 4379754.424378677 4305137.804118124 3631577.241994714 4584687.257057227 4613996.357664615 0.7662667392725725 0.9691830094285657 1.0291211618328073 1.004298431353499 0.9671833030987281 0.9492323107501325 0.9330605120583969 0.7870784804504799 0.9936477841906615 1.0 22.137585434467464 1.988496355401657 24.106724240702572 0.8924554892332399 0.9544972493289153 0.0 0.08763215984969148 862.6006962658216 1807642.0449639638 0.03452836824413097 0.02373177054224058 97.38596126665999 -1.988496355401657 0.06204176009567541 ERHPS(ph)WR ddPTM_BT-474_Trastuzumab_2h_R1 10 ERHPSWR 7 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR 115.78 0.0033933 83577140000.0 12732207.0 15299053.0 12892267.0 14974216.0 14535267.0 14095706.0 14422330.0 12873585.0 15762721.0 14649563.0 True False 12663658.21219317 15808272.73063216 14707386.13200641 16869950.210259035 16386247.095172731 13121303.021942848 13724666.799249114 13834277.283440063 11878209.619190045 13714615.347218115 0.9233695507735752 1.1526588482730378 1.0723877964969444 1.2300709705052684 1.19480179941733 0.9567386827662203 1.000732900761452 1.0087251398010386 0.8660986340823209 1.0 23.70921082380619 2.724162617932853 24.77324034258084 0.9733221168620546 1.1208324731318684 0.42323478817226656 0.08616510204853263 709.6461916999084 1221017.80530349 0.02791782222598728 0.026434549101733935 529.8618090696749 -2.724162617932853 0.1475103562698138 ERHPS(ph)WRS(ph)EETQER ddPTM_BT-474_Trastuzumab_2h_R1 2 ERHPSWRSEETQER 14 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 ERHPS(1)WRS(0.869)EET(0.131)QER;ERHPS(0.997)WRS(0.66)EET(0.343)QER 125.23 4.959e-05 562804000.0 189032.0 223615.0 168046.0 301039.0 252453.0 264057.0 259962.0 210493.0 332595.0 277630.0 True False 188014.2727154298 231057.8900968779 191705.4161179835 339150.5065337761 284601.3931438376 245803.36111331786 247386.64490872138 226201.05652179613 250631.41879466828 259911.4157089985 0.7233782794901704 0.8889870784112632 0.7375798234757811 1.3048696057024871 1.094993816902919 0.9457197577982636 0.951811386329025 0.8703005826225613 0.9642955393512985 1.0 17.987660475022896 ERHPS(ph)WRSEET(ph)QER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERHPSWRSEETQER 14 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 ERHPS(0.988)WRS(0.136)EET(0.876)QER 98.292 0.0049823 836060000.0 165850.0 200060.0 148980.0 229870.0 208450.0 182160.0 208080.0 177540.0 210550.0 205570.0 True False 164957.08202766723 206718.87616117598 169955.08904262638 258971.5184308978 234994.87192005175 169567.7079585165 198014.37545720773 190788.93632985276 158662.77372545417 192450.34660266846 0.8571409973515735 1.074141355473712 0.8831113689470997 1.345653686795215 1.2210675432308802 0.8810984804750948 1.0289115034228893 0.9913670705086033 0.8244348556722952 1.0 17.55412674387863 2.7178759985027803 24.84768332640044 0.9555122656014841 1.0803473156066072 0.1675147181452421 0.14502487421803306 1546.5212561683375 1857777.1873967492 0.04858254108093951 0.045849735778956735 522.2470536420457 -2.7178759985027803 0.12483505000512318 ERHPSWR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERHPSWR 7 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 136.75 0.0026899000000000003 106380000.0 83556.0 100380.0 95722.0 92065.0 84527.0 85558.0 85740.0 81846.0 88299.0 105280.0 False True 83106.14377994428 103721.08761900874 109198.82556946087 103720.41956036286 95291.01241921926 79643.57684186842 81592.42864139272 87953.76412556687 66538.89459598142 98560.9402652572 0.8431955250861101 1.0523548917031842 1.1079320598563072 1.0523481135754178 0.966823288848122 0.8080642963381187 0.8278373605385957 0.8923795155449692 0.6751040971900754 1.0 16.588728398869126 2.8915302605304847 3.9178757009579708 0.8383962951592939 1.0224863309129437 0.4096088469128486 0.09915722533876102 0.22124279849921283 5.989058009534697 0.03020435930449469 0.03259279356178737 778.98709049399 -2.8915302605304847 0.1840900357536498 ERKS(ph)ESDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 4 ERKSESDKDVK 11 3 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 ERKS(0.997)ES(0.003)DKDVK;ERKS(0.944)ES(0.056)DKDVK;ERKS(0.996)ES(0.004)DKDVK;ERKS(0.901)ES(0.099)DKDVK 157.58 2.1784e-05 1656920000.0 2625030.0 1390540.0 1216020.0 1250530.0 1208090.0 1795380.0 2162150.0 1978700.0 4353000.0 1939100.0 True False 2610897.130148251 1436823.283300821 1387225.0461646814 1408846.9697802702 1361933.1005895676 1671269.6064699236 2057558.5442849013 2126360.6416350133 3280261.477211597 1815344.9778529687 1.4382374490804453 0.7914877341937343 0.7641660748170135 0.776076716529401 0.7502337666972494 0.9206347150868014 1.1334256405184218 1.1713259284468822 1.8069631487295617 1.0 20.791812305173224 1.83550227910174 1.8478902424859682 1.3895859839829012 0.8843541705581781 0.33050535915726353 0.26862065694480963 0.3486077610658191 2.2679726691925297 0.17448303687052832 0.07701939109762548 68.47030762841001 -1.83550227910174 -0.5052318134247231 ERKSES(ph)DKDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERKSESDKDVK 11 3 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 ERKS(0.092)ES(0.908)DKDVK 153.94 0.00017815 667040000.0 849740.0 445420.0 413100.0 404880.0 353540.0 550560.0 674070.0 621260.0 1384300.0 597490.0 True False 845165.09425499 460245.53543792403 471260.8892704317 456137.7664867184 398561.2234042462 512501.08307883545 641462.6589025374 667621.575894358 1043157.8136696556 559357.6766630757 1.5109564586597566 0.8228107964542141 0.84250365898579 0.8154670714593036 0.7125337508227605 0.9162314284059359 1.1467844022974176 1.1935503949407564 1.8649208854927235 1.0 19.093411572050968 1.7621782651490427 2.071604182922461 1.428220119838638 0.9186745043263101 0.29360812393426716 0.2886981116368656 0.33056684724717844 2.8417661780828007 0.18654025005516145 0.07989430613265998 57.83333875876479 -1.7621782651490427 -0.5095456155123278 ERLDDWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERLDDWDR 8 1 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 92.538 0.011621 0.0 271680.0 330030.0 303450.0 337930.0 343740.0 379790.0 322170.0 333800.0 380850.0 400970.0 False True 270217.3050664855 341014.84904265165 346173.1223653175 380711.9033512562 387513.2514933971 353536.01122949575 306585.40629108343 358709.85100205534 286994.6206285403 375379.75131231186 0.7198505090426884 0.9084529675627896 0.922194447503124 1.0142046874406607 1.0323232676740475 0.9418089547812547 0.8167340012860942 0.9555919032606867 0.7645447566769895 1.0 18.517991305028637 4.7498069687788105 3.3258417044916317 0.9310471814771132 0.6885360249829663 0.38399707049529763 0.07969955748345217 0.36197572838351383 6.454276484952502 0.019520754548416706 0.22786042534427756 56209.1436422945 -4.7498069687788105 -0.2425111564941469 ERLDQPMTEIVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERLDQPMTEIVSR 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 241.42 6.2944e-17 1502040000.0 202421.0 345827.0 319792.0 359081.0 334422.0 308235.0 346367.0 292607.0 352952.0 347837.0 False True 201331.1878270874 357337.64263816364 364815.93391810666 404540.6177825957 377008.65942551004 286927.4399571439 329611.9049595668 314442.82016823994 265971.7089144927 325637.7448617622 0.6182673569139084 1.0973471235340315 1.1203121863928156 1.2423026020964765 1.1577547915569661 0.8811246376827374 1.0122042366418293 0.9656215384421278 0.8167717444038971 1.0 18.31290840736052 2.72926410400736 24.78139838847501 0.9421959275579896 1.0648841179069353 0.09809018039273576 0.164908187704228 1383.4446571519493 3687791.461868114 0.05403415983802602 0.05159601950379577 536.1225863138828 -2.72926410400736 0.12268819034894562 ERLEHPVLHVSWNDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERLEHPVLHVSWNDAR 16 1 A8MXB9;C9J660;J3KQJ1;Q8NBJ7;A0A494C1B1;H7C3B2;C9JL30;Q8NBJ7-3;Q8NBJ7-2;F8WA42 A8MXB9 SUMF2 Sulfatase-modifying factor 2 0 137.61 7.1428e-06 232990000.0 19693.0 41968.0 45813.0 58745.0 51298.0 54404.0 47610.0 26518.0 39365.0 40823.0 False True 19586.975076097995 43364.87950980828 52263.072186265505 66182.11097673952 57830.49623293274 50643.179533240684 45306.92241213796 28496.907815675542 29664.023213975302 38217.64118967133 0.5125113551328111 1.1346822608593654 1.3675117186559929 1.7317162681046325 1.513188528457951 1.3251257261509761 1.1854976131908048 0.7456480025611076 0.776186658584054 1.0 15.221951116813534 1.8562174728068828 4.156033713348121 0.8212771626228698 1.2928350837629448 0.2770347126275253 0.30391544306465934 0.2932862270817144 7.915772203542772 0.1582403376874426 0.08824981931074205 71.8153816515206 -1.8562174728068828 0.471557921140075 ERLELCDER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERLELCDER 9 1 P07919 P07919 UQCRH Cytochrome b-c1 complex subunit 6, mitochondrial 0 93.843 0.0083219 686400000.0 379860.0 507890.0 509090.0 435460.0 539500.0 873180.0 463910.0 382510.0 679230.0 534410.0 False True 377814.87596641335 524794.8116240118 580765.4469103954 490589.19135128055 608202.1271329719 812819.1218446278 441468.90099170175 411054.8385464232 511842.86771569797 500303.49626858043 0.7551713685478406 1.0489529166557805 1.1608262809313252 0.9805831760326438 1.2156663538614723 1.6246520919939325 0.8824021904390326 0.8216109653684182 1.0230647427675037 1.0 18.932444008781655 ERLEQEQLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ERLEQEQLER 10 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;A0A0U1RQP7;A0A075B6E5;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 0 ; 166.11 5.1513e-06 1355240000.0 1016470.0 1174580.0 1170730.0 1070610.0 1112350.0 1227090.0 1274650.0 1130920.0 1470690.0 1212610.0 False True 1010997.4384604344 1213675.1852513966 1335558.6078324195 1206149.1162278845 1254001.179085008 1142264.1565591556 1212990.3098641378 1215314.993095399 1108258.1557363495 1135220.1916323486 0.8905738692039185 1.0691099349688598 1.1764753813196376 1.0624803233049849 1.104632553515334 1.0062049327335152 1.068506637571309 1.0705544193570775 0.9762495099235066 1.0 20.114540724607643 -0.37160154504474796 7.903718381257527 1.0000059630200702 1.0547892171191118 0.027037543700309086 0.07313578116249149 0.0 0.0 0.06854760584320801 0.016156825641945004 0.4250093211614695 0.37160154504474796 0.05478325409904161 ERLEQQVPVNQVFGQDEMIDVIGVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERLEQQVPVNQVFGQDEMIDVIGVTK 26 1 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2 P39023 RPL3 60S ribosomal protein L3 0 218.76 3.0989e-34 163770000.0 97959.0 92106.0 85657.0 96777.0 99857.0 105750.0 118170.0 102900.0 139220.0 120260.0 False True 97431.59962826796 95171.69253074717 97716.76105600923 109028.95827723075 112573.19705119048 98439.75140872368 112453.665646762 110578.92051561267 104911.0964524234 112584.90384023402 0.8654055411063842 0.8453326270616401 0.8679383978039921 0.968415431894409 0.9998960181281483 0.8743601322288882 0.998834318021373 0.982182484008087 0.9318398193180473 1.0 16.780653868329953 3.7673890579135882 5.176064277404348 0.9653582082241701 0.8565915016749932 0.6348880571388986 0.03670369337383003 0.11691778014058599 8.949466659263164 0.009434858141364388 0.016796215556600484 5853.141966058102 -3.7673890579135882 -0.10876670654917686 ERLNS(ph)SENGEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERLNSSENGEDR 12 1 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 ERLNS(0.5)S(0.5)ENGEDR;ERLNS(0.872)S(0.128)ENGEDR 187.93 5.9675e-06 3122300000.0 1519200.0 1858070.0 1609170.0 1762580.0 1697090.0 1774360.0 1763860.0 1730530.0 1833330.0 1634320.0 True False 1511020.7959989866 1919914.7367229676 1835727.1488436244 1985722.4472785993 1913204.35205949 1651702.6695941635 1678535.353200455 1859670.9360532854 1381530.3868633907 1530016.2983882532 0.9875847712150015 1.2548328659932841 1.199808884897117 1.2978439833421351 1.2504470403844026 1.0795327287258947 1.0970702436102506 1.2154582523155448 0.9029514184383002 1.0 20.545115590528813 1.240272955493184 24.9995688851939 0.9514756478753993 1.1780935914628474 0.4802034481565345 0.0919856829835572 35.3851463499845 516678.3647999064 0.06911842331736137 0.02225062118084572 17.38893385519275 -1.240272955493184 0.22661794358744813 ERNEEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERNEEEAKR 9 2 Q96IZ7-2;Q96IZ7;C9J713;H7C5Q0 Q96IZ7-2 RSRC1 Serine/Arginine-related protein 53 0 116.23 0.0007576000000000001 48450000.0 49047.0 35873.0 42955.0 39123.0 38757.0 39098.0 47670.0 44331.0 58306.0 47775.0 False True 48782.936401634 37067.01111931355 49002.69062844688 44075.96778862844 43692.4742192634 36395.24728679221 45364.019982915706 47639.20432825676 43937.267560372034 44725.958597764686 1.0907074533685248 0.8287583381424962 1.0956208019853584 0.9854672581759102 0.9768929630375114 0.8137387867771977 1.0142660192236306 1.0651354564961224 0.9823661456988411 1.0 15.448824782998704 2.024220521228198 24.993886975571296 1.0272286825466512 0.9620125564719036 0.06621449697786419 0.08894822013331061 507.2076159617792 523401.0454718082 0.032183643498229775 0.02376783491604036 105.73542645324319 -2.024220521228198 -0.06521612607474758 ERNHKPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 ERNHKPSR 8 2 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 ERNHKPS(1)R;ERNHKPS(1)R;ERNHKPS(1)R;ERNHKPS(1)R;ERNHKPS(1)R 88.24 0.007698899999999998 1775931000.0 360075.0 539617.0 349665.0 300426.0 393658.0 327774.0 460341.0 381017.0 714429.0 550503.0 True False 358136.39620809304 557577.8256396354 398894.79265733645 338459.90079662856 443788.0129062307 305115.7548770026 438072.547156606 409450.4233051227 538367.5458081336 515369.4272306695 0.6949119937760647 1.0818993059711985 0.7739977801958338 0.6567325939672793 0.8611065954977568 0.5920330907414084 0.8500165590158942 0.7944794581729439 1.0446245302152364 1.0 18.97524743054987 1.242348010689874 24.664674531309934 1.0223123350990126 0.7921263975510708 0.35206868697280913 0.1269752723222721 82.08405908246219 534591.7066532355 0.0902777408461708 0.03011973070323843 17.472216831710192 -1.242348010689874 -0.2301859375479418 ERPDCLDTVLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPDCLDTVLAR 12 1 Q9P253 Q9P253 VPS18 Vacuolar protein sorting-associated protein 18 homolog 0 ; 180.09 1.8135e-05 482540000.0 222540.0 297360.0 260020.0 274290.0 288110.0 284050.0 283510.0 232210.0 292020.0 290700.0 False True 221341.8693665181 307257.44784208445 296628.5558656442 309015.0858764129 324799.1007382402 264414.2920817774 269795.5381866254 249538.68933848795 220055.5838675237 272147.27711920894 0.8133164943243709 1.1290116553600358 1.089955993701571 1.1354700629286647 1.193468125701541 0.9715852933775845 0.991358579966415 0.9169251736778622 0.8085900626929019 1.0 18.054028076157486 2.1776159479474337 1.8113813755175745 0.9045022387909298 1.0768621709892041 0.2805549992451395 0.10713665851568595 0.4214189288584907 2.721421335763439 0.056770161405782844 0.03382663484613538 150.52753435948324 -2.1776159479474337 0.17235993219827428 ERPDLEAPAPGS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 6 ERPDLEAPAPGSPFR 15 1 Q9NQT8;H0YBA8;Q9NQT8-2 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR 168.57 1.3109e-06 15228160000.0 3113810.0 3566400.0 3219810.0 3242320.0 3156420.0 3471320.0 3486590.0 2932500.0 3498890.0 2997390.0 True False 3097045.59293681 3685105.4680656726 3673131.260909775 3652797.37955744 3558371.377432908 3231355.8190083257 3317930.3216327718 3151338.040933278 2636635.4422239587 2806094.0040053115 1.1036856172730511 1.3132508970853056 1.308983681824945 1.3017373524705789 1.2680870178810204 1.15154938301996 1.1824017003339462 1.1230336675945918 0.9396105185572992 1.0 21.42013190930146 1.6594262672883375 1.0408024353992094 0.9670325797620017 1.2606024236831077 0.702268161518124 0.06812612150567014 0.26419758043378616 0.5413166234189122 0.05972081261623237 0.023111773896973668 45.64847435410099 -1.6594262672883375 0.29356984392110597 ERPDLPPIQYEPVLCSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPDLPPIQYEPVLCSR 17 1 F5H365;Q15436;G3V4V1;G3V1W4;G3V3G5;G3V2R6;G3V5X8;G3V4Q2 F5H365 SEC23A Protein transport protein Sec23A 0 ; 190.51 2.6868e-10 900180000.0 525840.0 637330.0 615060.0 621170.0 651570.0 635590.0 628040.0 551730.0 579680.0 632050.0 False True 523008.9358663158 658543.1437758792 701655.1018026421 699810.0583100055 734543.5773420394 591653.1593179267 597659.3058542133 592902.8942281724 436825.63131404057 591712.0278747701 0.8838909997229351 1.1129453395448863 1.1858050347949667 1.1826868904853718 1.2413869293485076 0.9999005114750585 1.0100509668542716 1.002012577566962 0.7382402431178741 1.0 19.17453569583692 1.9337847082862964 1.3689584233681347 0.8922320212443153 1.1205045635626238 0.3676775344301031 0.11476279822567079 0.4515880950224965 1.5714943193670134 0.08457540028507204 0.037806774619179306 85.85877904199918 -1.9337847082862964 0.2282725423183085 ERPDLPPVQYEPVLCSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPDLPPVQYEPVLCSR 17 1 A0A2R8YFH5;Q15437;Q5QPE2 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ; 182.47 4.4082999999999996e-14 232820000.0 151622.0 187076.0 167422.0 172747.0 167437.0 178204.0 183313.0 165241.0 188190.0 189795.0 False True 150805.6839987877 193302.71157016983 190993.5623418889 194616.7524878512 188759.10947314813 165885.17692709385 174445.4498663357 177572.12249679628 141813.09611680452 177682.12060832555 0.848738654640536 1.0879131277157459 1.0749171705514844 1.0953085871642403 1.0623416066112819 0.9336064673201625 0.9817839255243659 0.9993809275173401 0.7981281157118273 1.0 17.438938990876814 2.7374783208060585 24.92947477154726 0.9505459159955368 1.0425442413435575 0.2157361897794431 0.08553798601845664 147.47163453977043 3396817.0912677203 0.02664736851765291 0.026470719376715322 546.3592759356393 -2.7374783208060585 0.09199832534802066 ERPDLQLQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPDLQLQDR 10 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 0 ; 157.68 7.9748e-06 637670000.0 262010.0 338190.0 301120.0 305570.0 309630.0 310440.0 319920.0 260770.0 370820.0 316220.0 False True 260599.3672720479 349446.44970982807 343515.07861803996 344255.1306692022 349059.54517920734 288980.01349715545 304444.24738691846 280229.98156322906 279436.379733426 296038.5688704374 0.8802885660013455 1.1804085225893821 1.1603727174089296 1.1628725675263853 1.1791015829831781 0.9761566359403286 1.028393862828596 0.9465995685375475 0.9439188305754935 1.0 18.17542562155209 2.723871607857604 24.193005454448535 0.9774608942301009 1.1218214240382824 0.3757442776784311 0.08567634435585002 524.8023893541782 864354.8412746952 0.02733012514331794 0.025877295920650814 529.5068806013101 -2.723871607857604 0.1443605298081816 ERPEIS(ph)PPSDFEHTIHVGFDAVTGEFTGMPEQWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWAR 35 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 ERPEIS(0.46)PPS(0.46)DFEHT(0.078)IHVGFDAVT(0.002)GEFTGMPEQWAR;ERPEIS(0.472)PPS(0.472)DFEHT(0.056)IHVGFDAVTGEFTGMPEQWAR 139.3 1.1759e-10 121297000.0 26054.0 26614.0 24593.0 23695.0 22235.0 21947.3 22668.0 9801.4 24520.0 21942.2 True False 25913.72815887154 27499.830901497255 28055.48063381199 26694.784570496926 25066.49545282972 20430.134809387044 21571.462239830773 10532.830238500736 18477.374551166627 20541.830010337468 1.2615102036104242 1.3387235162426252 1.365773186697259 1.299532931441018 1.2202659373685432 0.9945625486680488 1.050123685619789 0.5127503359340524 0.8994999248785563 1.0 14.326277092326967 2.4909353698261305 1.386290832934447 0.7711664176182925 1.3214828211902276 0.695051627854717 0.13709403534334239 0.20438900761621143 0.7952650546461806 0.06859777227381388 0.05165111594653309 309.6958386491708 -2.4909353698261305 0.5503164035719351 ERPEISPPS(ph)DFEHTIHVGFDAVTGEFTGMPEQWAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWAR 35 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 ERPEIS(0.406)PPS(0.522)DFEHT(0.068)IHVGFDAVT(0.004)GEFTGMPEQWAR 120.98 3.0485000000000005e-08 14341000.0 16189.0 15981.0 16966.0 14844.0 18176.0 20852.0 13881.0 9500.4 18846.0 15390.0 True False 16101.840222766989 16512.917924281493 19354.66532888439 16723.248878010396 20490.605862407592 19410.550320328188 13209.522999430526 10209.368090053695 14201.65582346193 14407.797023958108 1.1175782249008595 1.1461098387784663 1.3433466127195122 1.1607082505536428 1.4221886821652638 1.347225414687007 0.9168315584585885 0.7086002164714684 0.9856923858551453 1.0 13.814562141462096 2.1655607128906706 5.853516500890115 0.8551595540966803 1.2578847268988773 0.668798547450742 0.12042640885636235 0.11027752768224719 6.5676944121384935 0.0464949615032461 0.03429697072305778 146.40661947169167 -2.1655607128906706 0.402725172802197 ERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWAR 35 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 0 ; 70.679 0.0029127 203669000.0 31468.0 36197.0 39427.0 40874.0 38971.0 44787.0 42572.0 15001.199999999999 46581.0 33620.0 False True 31298.579784423473 37401.79526345143 44977.978894372594 46048.644209094375 43933.72585078602 41690.980107257754 40512.629719166915 16120.665718550115 35101.7367034214 31474.34281646987 0.9944156726934288 1.1883264880714157 1.4290363155997827 1.4630533980521454 1.3958584014595028 1.3246020846364337 1.2871636416811059 0.5121843468679036 1.1152492335774327 1.0 14.941888634370052 1.7692276708980261 24.999999998355413 0.8294250065120552 1.309548092327532 0.4962619968349835 0.1927315545864618 18.179803224039013 14828.177681558072 0.0885309128215107 0.04910576681194613 58.77974137630435 -1.7692276708980261 0.4801230858154768 ERPELLGS(ph)FEDVLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPELLGSFEDVLIR 15 1 Q8N4Y2;Q8N4Y2-2;Q8N4Y2-3 Q8N4Y2 CRACR2B EF-hand calcium-binding domain-containing protein 4A 1 ERPELLGS(1)FEDVLIR;ERPELLGS(1)FEDVLIR 88.551 0.0040829 34398600.0 23567.0 22802.0 19202.6 28575.0 27720.0 23310.0 20795.3 17476.1 22721.0 21772.0 True False 23440.11789053985 23560.950785899917 21906.159168008682 32192.592070139242 31249.977690687647 21698.634565837816 19789.35189323951 18780.25532383768 17121.71399580168 20382.492320053014 1.1500123499361574 1.1559406188378554 1.0747537064668304 1.5794237311433714 1.5331774544540275 1.0645721938768957 0.970899514274319 0.9213915074242909 0.8400206278481821 1.0 14.315042850971617 2.5089773287013712 5.532956528840622 0.9361367976990834 1.2957445422803047 0.5546043651562862 0.155479269615254 0.15951068142918728 13.920217857195658 0.05772215982400665 0.05244635586403711 322.832559034285 -2.5089773287013712 0.35960774458122124 ERPELLGSFEDVLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPELLGSFEDVLIR 15 1 Q8N4Y2;Q8N4Y2-2;Q8N4Y2-3 Q8N4Y2 CRACR2B EF-hand calcium-binding domain-containing protein 4A 0 89.46600000000002 0.005769 0.0 19495.0 23030.0 25796.0 25917.0 18605.0 22143.0 22933.0 19350.0 21327.0 26846.0 False True 19390.04108609813 23796.539628071023 29427.85257714853 29198.08954267014 20974.23646952539 20612.30652901531 21823.64317743248 20793.995257309074 16071.246617158682 25132.665295983046 0.7715075523325908 0.9468370882205805 1.170900588162131 1.1617585798724208 0.8345408742970727 0.8201400960171851 0.8683377954713205 0.8273692826615002 0.6394565171616458 1.0 14.617276055360122 3.14057062725444 9.763954437553567 0.8247456522915699 1.0191413255852821 0.3068860446532242 0.13301417703963017 0.3750408036895018 34.182560024736446 0.03962124264039518 0.04739904547468383 1382.199168128348 -3.14057062725444 0.1943956732937122 ERPES(ph)PMVPSEQVVEEAVPLPPQALTTSQDGHR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERPESPMVPSEQVVEEAVPLPPQALTTSQDGHR 33 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 ERPES(0.996)PMVPS(0.004)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.975)PMVPS(0.025)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.98)PMVPS(0.02)EQVVEEAVPLPPQALTTSQDGHR 119.36 1.3024e-06 673205000.0 137121.0 157941.0 126986.0 157151.0 133466.0 152263.0 147687.0 141751.0 150945.0 168541.0 True False 136382.75577157532 163197.97070764925 144864.52501790138 177046.3004869451 150462.10398504022 141737.4171985484 140542.815590872 152329.17941699325 113746.62730937387 157784.56908479016 0.8643605427491838 1.0343088152045468 0.9181159213360984 1.1220761416270313 0.9535920074933627 0.8982970769618267 0.8907259842079183 0.9654250748381783 0.720898298034764 1.0 17.26759659491238 2.8747458565985538 4.570668232333386 0.8991063662772 0.9889926936387681 0.16899979468970794 0.09329744600057642 0.40128095262814745 13.17745003510669 0.027572147478874386 0.029499533267260566 749.4555095072134 -2.8747458565985538 0.0898863273615681 ERPES(ph)PMVPSEQVVEEAVPLPPQALTTSQDGHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPESPMVPSEQVVEEAVPLPPQALTTSQDGHRR 34 2 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 ERPES(0.866)PMVPS(0.134)EQVVEEAVPLPPQALTTSQDGHRR 77.126 0.0012389 66637000.0 12306.0 17727.0 20960.0 22274.0 19734.0 21656.0 19725.0 15465.0 23006.0 22595.0 True False 12239.745863325134 18317.03247880221 23910.985812414052 25093.886116195343 22247.007927418123 20158.97169274061 18770.826393182557 16619.0768296788 17336.47956460602 21152.96775544726 0.5786301952913054 0.8659320380273948 1.130384449541675 1.1863056950830566 1.0517204103281976 0.9530091439556667 0.8873850047990898 0.7856617105370048 0.8195767026658268 1.0 14.368572466804888 2.189547134250287 3.3465682749998344 0.8436867483509425 0.9802169345647965 0.05153194341824974 0.16536947991606213 0.5701557896252789 13.095488414594078 0.07212336065655318 0.051889402261601304 154.72024136765222 -2.189547134250287 0.13653018621385404 ERPEVVLDS(ph)DAEDLEDLSEESADESAGAYAYKPIGASSVDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPEVVLDSDAEDLEDLSEESADESAGAYAYKPIGASSVDVR 42 2 Q9UHH9 Q9UHH9 IP6K2 Inositol hexakisphosphate kinase 2 1 ERPEVVLDS(1)DAEDLEDLSEESADESAGAYAYKPIGASSVDVR 53.194 0.012286 14777000.0 6377.6 6001.0 4485.3 6304.0 4909.9 5940.0 5649.4 4928.3 6913.3 7553.2 True False 6343.263710217972 6200.739657318895 5116.791253073513 7102.085753636315 5535.146661742686 5529.381781255968 5376.116939196224 5296.074771400328 5209.609848473913 7071.148309380142 0.8970627446469192 0.8769070292435224 0.7236153209070582 1.0043751655180437 0.782779036666521 0.7819637687306088 0.7602890936489911 0.7489695505855658 0.7367417031210011 1.0 12.787728803193978 3.088544280813158 24.999806364201014 0.7830014234197407 0.8683481046208003 0.10506631462716853 0.0955262864200135 37.252338258022384 10509.101910741068 0.025874534333316445 0.030925983215447605 1226.1519151711661 -3.088544280813158 0.0853466812010596 ERPFYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERPFYGR 7 1 Q13232 Q13232 NME3 Nucleoside diphosphate kinase 3 0 ;;; 100.45 0.008923200000000001 803260000.0 316863.0 348641.0 331963.0 346498.0 360153.0 403919.0 349314.0 310429.0 398195.0 352695.0 False True 315157.04481478914 360245.304927065 378700.504925878 390364.61127275985 406016.3497559249 375997.0302530518 332416.3473109336 333594.78830652224 300065.17778963275 330185.7031426192 0.954484224529435 1.0910384716792596 1.146931866890383 1.182257764516676 1.2296605997521088 1.1387441269395149 1.0067557260871192 1.0103247509854492 0.9087770152786527 1.0 18.332918128147146 2.1725656816013545 4.2260785263076635 0.9821266182136965 1.131152944410582 0.4835145927345226 0.0721830341590891 0.2011757143222249 7.098382294507339 0.03024411108160007 0.022114004006577266 148.78723791279472 -2.1725656816013545 0.14902632619688538 ERPGEQSEVAQLIQQTLEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPGEQSEVAQLIQQTLEQER 21 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 ; 229.07 1.3074000000000002e-25 85451000.0 86111.0 95436.0 86886.0 95514.0 91500.0 98754.0 101579.0 87688.0 118303.0 94582.0 False True 85647.3879438316 98612.52956771974 99118.7935733496 107606.062606729 103151.98263700999 91927.36842191099 96665.23570053688 94231.72383064171 89148.81082898304 88545.69578427581 0.9672676597685181 1.113690831544989 1.1194083766062786 1.2152602298014579 1.164957615651014 1.03819127070698 1.0916988662672291 1.064215747541459 1.0068113423172664 1.0 16.434134558671143 1.5253412989676292 1.0703712415777966 0.9966344673748911 1.1136778533422538 0.2767568835142318 0.06293586529689715 0.6261035567674853 1.390051977541133 0.059005182509096386 0.021417068456392928 33.52287818820748 -1.5253412989676292 0.11704338596736263 ERPGFPPR ddPTM_BT-474_Trastuzumab_2h_R1 5 ERPGFPPR 8 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ;;;; 133.23 0.00084645 660380000.0 534305.0 624427.0 583330.0 557942.0 546402.0 610080.0 606558.0 539460.0 760258.0 623228.0 False True 531428.3612468666 645210.6752209079 665457.7936047477 628577.3999929184 615983.0559216132 567906.6055738457 577216.4722634236 579717.2445223754 572902.6028352712 583453.0554676652 0.9108331103363606 1.1058484811665628 1.14055070475439 1.0773401460535397 1.0557542721716895 0.973354411724936 0.9893109083142213 0.9935970667900688 0.9819172210454236 1.0 19.154257056044568 2.8128395626626195 5.08034913952703 0.9879722334996806 1.06743377952177 0.273740754635478 0.056509766608621545 0.27652334826446473 13.194792835115544 0.017615997592266588 0.018632098980034983 649.8895633855415 -2.8128395626626195 0.07946154602208955 ERPGLGSENMDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPGLGSENMDR 12 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 ; 124.81 0.00028853 1042010000.0 246260.0 302140.0 306940.0 309030.0 309890.0 288940.0 300630.0 295190.0 333680.0 296400.0 False True 244934.1635220582 312196.54725251294 350154.4840296938 348153.16631444066 349352.65463806625 268966.2578915992 286087.3783818745 317218.57674444775 251449.03508292354 277483.4982391929 0.8826981246680229 1.1250995076593606 1.2618929999500654 1.254680615329168 1.2590033528297297 0.969305416712558 1.0310068173324853 1.1431979874745666 0.9061765354643633 1.0 18.08204245232708 2.7303566838827535 24.9486728640795 1.0307536382956035 1.1662109410387935 0.26705106868374306 0.11855250802364893 950.7508119786056 2891284.8328660126 0.04005906739870905 0.03839471574346579 537.4730390652069 -2.7303566838827535 0.13545730274319 ERPGSEEPPAEPVSFYTQPFSHYGQALCVSFPQPCR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPGSEEPPAEPVSFYTQPFSHYGQALCVSFPQPCR 36 1 Q9H4A4;A6NKB8;A0A087WU27;A0A087WUS4 Q9H4A4 RNPEP Aminopeptidase B 0 ; 337.46 1.985099999999999e-129 829870000.0 132975.0 157708.0 116818.0 123920.0 112746.0 109945.0 119840.0 116149.0 157851.0 144295.0 False True 132259.07737491152 162957.21544350064 133264.9589997416 139608.2592941963 127103.53480210199 102344.7609326915 114042.88136674261 124816.62817267135 118950.73614503276 135085.9695628353 0.9790733841784446 1.2063222847706698 0.9865196173297134 1.0334771238345182 0.9409084837857993 0.7576268746776532 0.8442244722809316 0.9239792154329755 0.8805558158999094 1.0 17.043518314213202 3.1996891642755285 2.7203330900174265 0.875628481355208 1.0640012034496213 0.4873804111421348 0.08189979473905766 0.20964079941736588 3.1722111450070174 0.02434064994915175 0.031672334921677085 1583.7592495072035 -3.1996891642755285 0.18837272209441336 ERPIS(ph)LGIFPLPAGDGLLTPDAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 ERPIS(1)LGIFPLPAGDGLLTPDAQK 97.882 0.0034335 92912000.0 131100.0 73501.0 75408.0 78530.0 85708.0 93308.0 100230.0 106700.0 189630.0 99688.0 True False 130394.17216657926 75947.43635270717 86024.79094191406 88471.88994813779 96622.40576888375 86857.83758340607 95381.4919842174 114662.49581162166 142898.22741181604 93325.82649280925 1.3971927928934669 0.8137879856714573 0.9217683268901161 0.9479893537825196 1.0353233333146907 0.9306945445599505 1.022026759029737 1.228625559726025 1.531175589672665 1.0 16.509988759630673 1.6829287998164661 3.802160388044991 1.296720660444061 0.9931309000875883 0.2558499065435319 0.1877232169215245 0.2049301196516924 6.92427397081638 0.09997963677306171 0.046541635866778966 48.18687914199615 -1.6829287998164661 -0.3035897603564728 ERPISLGIFPLPAGDGLLT(ph)PDAQK ddPTM_BT-474_Trastuzumab_2h_R1 6 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK 246.81 1.0563e-37 5232085000.0 3943390.0 3408636.0 3197801.0 3016609.0 3130312.0 4097811.0 4204279.0 3657354.0 5389408.0 4283631.0 True False 3922159.226391816 3522090.388696029 3648023.5850154343 3398511.3901001113 3528938.678387153 3814538.9707795144 4000901.962864541 3930284.3271473036 4061260.612767291 4010246.0021789875 0.9780345705128042 0.8782729006605289 0.9096757612957564 0.8474570857382596 0.8799805988135606 0.9511982478648107 0.9976699585737709 0.9800606558828969 1.0127210676254235 1.0 21.935259308557455 2.4999065491645 3.251926583174406 0.99397768843943 0.8956521127638009 0.6717800424966043 0.032491524367358575 0.1478036708623544 3.2239614245451467 0.011616224653331737 0.010179333586065892 316.159727920681 -2.4999065491645 -0.09832557567562916 ERPLCPLQPQNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPLCPLQPQNR 12 1 K7EIG1;A0A494C0R8;O75153;I3L2B0 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ; 153.75 6.2159e-05 955350000.0 433590.0 527500.0 479760.0 550980.0 477970.0 576860.0 567210.0 485730.0 623850.0 616960.0 False True 431255.59961637796 545057.5186195169 547306.0378513247 620734.0115067485 538836.6463498543 536983.0259823763 539771.8853473805 521977.63908696285 470110.52666171716 577585.0845939699 0.746652936717612 0.943683507690786 0.9475764739251694 1.074705749964287 0.9329130213406482 0.9297037619312211 0.9345322442438568 0.9037242356317116 0.8139242844059849 1.0 19.139673961363847 4.739082128223474 24.444055606111036 0.9408322920764379 0.7466528606800351 0.467721788342783 0.06259827005862964 29.1611193504012 1366321.6039775652 0.01532232020024782 0.09063203985840751 54838.065785940475 -4.739082128223474 -0.1941794313964028 ERPLLLEEQPLLLQDLLDQER ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPLLLEEQPLLLQDLLDQER 21 1 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 0 106.03 0.00034355 16670000.0 10979.0 12213.0 9704.9 10182.0 10908.0 12679.0 11902.0 12576.0 12617.0 12676.0 False True 10919.890283881574 12619.5023220856 11071.265563497009 11471.040156016015 12297.06914321865 11802.530573155627 11326.254789944676 13514.484979634048 9507.709409138233 11867.0068275304 0.9201890959183069 1.063410723992294 0.9329450740529328 0.966632978537117 1.036240167545075 0.9945667635224416 0.9544323142773267 1.1388284489970668 0.8011885008004878 1.0 13.534668474628756 3.2994168453564363 24.99971338765199 1.0022306504207452 0.9747063298794926 0.0 0.08673623209676586 370.80443580076764 152321.69309443494 0.023203699722968915 0.031417948739328724 1992.5849481166852 -3.2994168453564363 -0.027524320541252645 ERPLQQVS(ph)PVASVPWR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPLQQVSPVASVPWR 16 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 ERPLQQVS(1)PVASVPWR;ERPLQQVS(1)PVASVPWR 123.84 5.1907e-05 1226770000.0 397510.0 483920.0 416760.0 425820.0 431600.0 439400.0 442510.0 350160.0 437240.0 374160.0 True False 395369.85032751306 500026.98466418206 475436.1854571409 479728.7683396921 486561.7017063777 409025.3122363417 421104.100747641 376290.7172764522 329488.0607158281 350280.7884655077 1.128722622954942 1.4275033091442866 1.3573002034736408 1.3695548946354255 1.3890619118390206 1.1677069531223196 1.2021901132299961 1.0742545114303514 0.940639828290991 1.0 18.418152338552826 1.9433850641669457 1.0809469550199369 0.9697267803165323 1.3393271267278464 0.7235005542519776 0.08638350820945095 0.24987229060661548 0.5368873672272647 0.06671680554800352 0.02996524579849191 87.77787526148282 -1.9433850641669457 0.3696003464113141 ERPPLDVDEMLER ddPTM_BT-474_Trastuzumab_2h_R1 4 ERPPLDVDEMLER 13 1 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-5;A0A0G2JMG8;F5H5B1;K7ELX1;K7EPE6;F5GYZ4 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 ;;; 192.54 2.3985e-06 1618500000.0 890990.0 1141100.0 1090020.0 1085040.0 1039300.0 1130880.0 1148550.0 977480.0 1221220.0 1201630.0 False True 886193.0088382957 1179080.8236904833 1243485.3413763172 1222405.9527483429 1171648.6945862793 1052704.9274051758 1092990.2486129191 1050424.521142867 920266.6945096139 1124940.9446327987 0.7877684718174831 1.04812686329535 1.1053783287994852 1.0866401108258696 1.0415201795048246 0.9357868361248047 0.9715978903849848 0.9337597019243928 0.8180577824109743 1.0 20.101417836436106 2.729326379193382 21.275117051648284 0.9316334329707586 1.0249137274898539 0.15786634837856006 0.09302125684932389 152.06383429004342 350342.60572338436 0.030230544051094124 0.028980837368254516 536.199468542543 -2.729326379193382 0.09328029451909525 ERPPNPIEFLASYLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPPNPIEFLASYLLK 16 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 187.78 1.1721e-09 649210000.0 393890.0 417220.0 360810.0 390750.0 327970.0 431000.0 441820.0 413400.0 541400.0 431430.0 False True 391769.34000529314 431106.9154851837 411608.9117832593 440218.9099354996 369735.0354695102 401205.9844648688 420447.47868369665 444250.00720266526 407979.22438832006 403895.76803419413 0.9699763429363926 1.0673717072685096 1.0190968669629936 1.0899319695229646 0.9154219101355083 0.9933404017021104 1.0409801536917842 1.0999125080336438 1.0101101736569327 1.0 18.623623504191436 2.0575732474473276 7.410773890387824 1.053350392374578 1.0119669838866858 0.038051895646498246 0.052456438555869025 0.49861264508954295 53.93001636080274 0.019898273984211273 0.014623128765213706 114.17558551881744 -2.0575732474473276 -0.041383408487892126 ERPQDRPEDLDVPPALADFIHQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPQDRPEDLDVPPALADFIHQQR 24 2 Q01780;Q01780-2 Q01780 EXOSC10 Exosome component 10 0 154.79 3.2728e-08 99953000.0 21867.0 22813.0 25034.0 25808.0 21241.0 28010.0 24463.0 22420.0 29113.0 29183.0 False True 21749.2705016521 23572.316914250285 28558.569600571267 29075.290153846145 23945.9154447293 26073.73462844776 23279.631232264885 24093.0942464532 21938.49124421348 27320.515955176685 0.7960783221420478 0.862806432825944 1.0453158954767103 1.0642291749375608 0.8764810841792332 0.9543646493069732 0.8520933964226202 0.8818682006584889 0.8030042800145794 1.0 14.737697109112515 2.2420652444606852 24.939187604669065 0.8744010576496554 0.9384845151771403 0.061955599794300875 0.08874342394001614 215.35152883028226 1532468.1322244478 0.03270545691937851 0.026350807261843197 174.60844490951925 -2.2420652444606852 0.0640834575274849 ERPS(ph)SREDTPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 ERPS(0.5)S(0.5)REDTPSR;ERPS(0.829)S(0.17)REDT(0.001)PSR 118.64 0.00047532 738160000.0 344084.0 438430.0 456841.0 429480.0 451650.0 473360.0 470970.0 398522.0 490440.0 464330.0 True False 342231.4899753265 453022.877513468 521160.24186684453 483852.12396442366 509164.95036071766 440637.73736958357 448187.38181988284 428261.7352937114 369577.63355930557 434696.06186708715 0.7872891429137616 1.0421600682731385 1.1989072080119159 1.1130814525583774 1.1713125446174393 1.01366857449082 1.0310362138889604 0.9851981024494694 0.8501977956089876 1.0 18.729647500003214 1.7009371278534937 1.9809393515631772 0.9254824593652714 1.0666015801262032 0.16436061186252315 0.11151434338356014 0.5082079276340659 4.139182637467628 0.0823039772758113 0.032853061992720034 50.22698714194086 -1.7009371278534937 0.1411191207609318 ERPSQPEGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPSQPEGLR 10 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 90.689 0.0097219 310840000.0 152200.0 152920.0 165680.0 172220.0 148020.0 165010.0 159230.0 142390.0 183880.0 148890.0 False True 151380.57211100977 158009.84975790812 189006.30388362435 194023.03434188548 166869.46961672397 153603.2470917588 151527.43658232992 153015.86484176957 138565.23786576348 139387.71272885776 1.0860395736995911 1.1335995595628636 1.3559753595446864 1.3919665553254783 1.1971605412689765 1.1019855630356288 1.0870932137116476 1.0977715456126451 0.9940993732733516 1.0 17.08874386515216 2.7214591541251916 2.8557727052501662 1.0623210455056535 1.2465158943142136 0.4909753531061878 0.09110469210957053 0.26612436436742104 4.364449154731181 0.03406068246404817 0.03362174555662361 526.5736877290427 -2.7214591541251916 0.18419484880856007 ERPSQPEGLRK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERPSQPEGLRK 11 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;; 120.55 0.00024566 1702670000.0 796982.0 914496.0 776984.0 762281.0 829774.0 899586.0 870278.0 812583.0 1248950.0 942827.0 False True 792691.1374650244 944934.4465354932 886376.5935340051 858785.6964415675 935440.8004441799 837399.7372176656 828179.3283551896 873222.069672868 941163.0075725769 882654.9736651954 0.8980758746233546 1.070559249909038 1.004216392565439 0.9729574092530046 1.059803466081195 0.9487282825138244 0.9382820615808718 0.9893130336612078 1.0662864150240141 1.0 19.75149007872363 2.7027223968722636 0.00329541758293508 1.4569681077912484 0.5313678285844169 0.014958961823100858 0.05469575480743544 285151.41452073527 380.17524423278945 52927.58732073383 53848.8505355851 504.33881870379514 -2.7027223968722636 -0.9256002792068315 ERPSS(ph)REDTPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 ERPS(0.384)S(0.595)REDT(0.017)PS(0.004)R;ERPS(0.118)S(0.882)REDTPSR;ERPS(0.17)S(0.829)REDT(0.001)PSR;ERPS(0.372)S(0.593)REDT(0.004)PS(0.031)R;ERPS(0.225)S(0.775)REDTPSR 156.29 5.7535e-05 3399291000.0 1105497.0 1420382.0 1225304.0 1327834.0 1319702.0 1379024.0 1398741.0 1229028.0 1591467.0 1358261.0 True False 1099545.1269842621 1467658.5562309488 1397816.1526667078 1495937.6482541123 1487758.2272134142 1283695.316753322 1331078.5541204836 1320744.3102377304 1199271.2824152326 1271575.6201142534 0.8647107648111922 1.1542046992840873 1.0992788242834597 1.1764441096469747 1.1700116011029973 1.0095312433231298 1.04679464835987 1.038667531325474 0.9431379962345267 1.0 20.27818583042399 1.8885356692178443 1.2132185211400772 0.9825837164002649 1.094731730623677 0.17040808400605656 0.08816860992113501 0.7746942586280166 2.1080284252031545 0.06854853606828815 0.029433567272545216 77.36342158341283 -1.8885356692178443 0.11214801422341214 ERPSSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPSSFR 7 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 0 ; 93.429 0.024874 0.0 74880.0 97425.0 90010.0 94605.0 78935.0 86594.0 81524.0 73665.0 101885.0 90265.0 False True 74476.85439995017 100667.73223034383 102682.62561905499 106581.98329993081 88986.90436559988 80607.9606003501 77580.37266807682 79162.2563632905 76776.80693905427 84504.21042024554 0.8813389774257566 1.1912747510415864 1.2151184551445056 1.261262400653067 1.0530469892927417 0.9538928320787909 0.9180651742944408 0.9367847586482482 0.9085559945148018 1.0 16.366735604980704 2.8970356565446367 3.4068142515170967 0.9371971679109861 1.147638353840934 0.45871905090611476 0.09843620062287975 0.2105718690947372 4.573409118426534 0.031356506398384214 0.034077492561677365 788.9248874507455 -2.8970356565446367 0.21044118592994798 ERPT(ph)SPAPHRPPKR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERPTSPAPHRPPKR 14 3 M0QZ09;Q8N6T7;Q8N6T7-2 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 ERPT(0.891)S(0.109)PAPHRPPKR;ERPT(0.866)S(0.134)PAPHRPPKR;ERPT(0.923)S(0.077)PAPHRPPKR;ERPT(0.5)S(0.5)PAPHRPPKR 146.78 4.3504e-06 1028107000.0 111177.0 116516.0 102978.0 100332.0 103792.0 119464.0 109761.0 106459.0 140706.0 129007.0 True False 110578.435384926 120394.16462459075 117476.40729917813 113034.02091272842 117009.29597661793 111205.73486800732 104451.44110226154 114403.51116784828 106030.89166380306 120773.66281155053 0.9155840173322168 0.9968577736393411 0.9726988862007333 0.9359161449719491 0.9688312273777244 0.9207780262616316 0.8648528054104195 0.9472554570639964 0.8779305785339029 1.0 16.88194635398532 2.6961359654204444 7.203294234223018 0.9163992071277596 0.9597199283595935 0.1571879776445012 0.040297882996542994 0.37470039232368396 54.20436849206296 0.01218116462907719 0.011560770669278525 496.74781491595684 -2.6961359654204444 0.04332072123183395 ERPTPSLNNNCTTS(ph)EDSLVLYNR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERPTPSLNNNCTTSEDSLVLYNR 23 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 ERPTPSLNNNCTT(0.039)S(0.961)EDSLVLYNR;ERPTPSLNNNCTT(0.028)S(0.972)EDSLVLYNR;ERPTPSLNNNCT(0.011)T(0.326)S(0.662)EDSLVLYNR 247.98 5.814700000000001e-38 1514760000.0 346964.0 365862.0 317576.0 414009.0 329080.0 361213.0 298238.0 314746.0 519335.0 478757.0 True False 345095.98437532457 378039.49550175056 362287.9403799238 466422.4969507013 370986.3873900251 336243.19551394146 283811.0885602017 338233.9447678037 391351.8479824681 448202.318375511 0.769955821795187 0.8434572513411747 0.8083134011734255 1.0406516830194643 0.8277208130797905 0.7502040523410046 0.6332209293090275 0.7546456832122541 0.8731589104690604 1.0 18.773790585802303 2.99499764776122 24.985378142595057 0.7724029496369019 0.8692048360140621 0.033950431762808875 0.11213697893057313 440.2771425557272 2199081.592891069 0.0326148126515632 0.037990596395842194 988.54774044056 -2.99499764776122 0.09680188637716014 ERPTPSLNNNCTTSEDSLVLYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPTPSLNNNCTTSEDSLVLYNR 23 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 323.45 6.3334999999999974e-74 1845030000.0 300760.0 334590.0 361070.0 373610.0 403980.0 354980.0 339310.0 343670.0 398340.0 355340.0 False True 299140.7415775773 345726.62588607357 411905.51752329856 420908.98769290355 455424.4584229441 330441.0681330374 322896.27900992526 369316.40052090003 300174.4444825334 332661.89697812026 0.899233559042839 1.039273295278577 1.238210691591139 1.265275619229056 1.3690310268774128 0.9933240660705157 0.970644014066819 1.1101854581956845 0.902340926957067 1.0 18.34369710414189 ERPTS(ph)PAPHRPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERPTSPAPHRPPK 13 2 M0QZ09;Q8N6T7;Q8N6T7-2 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 ERPT(0.125)S(0.875)PAPHRPPK 109.48 0.00059183 73806000.0 86309.0 83982.0 82494.0 72442.0 67554.0 85316.0 79143.0 80136.0 101910.0 95213.0 True False 85844.32193383144 86777.29010180903 94108.43814929806 81613.14977235433 76156.60147607185 79418.30573226171 75314.55073437998 86116.15524236282 76795.64602403721 89136.42482404967 0.9630666935911255 0.9735334379082689 1.0557798154353046 0.9155981960624305 0.8543824999308727 0.8909747714139199 0.8449357362385435 0.9661163257596578 0.8615517862156524 1.0 16.443727476555082 3.5800944862807156 7.249559725423654 0.8999537104269426 0.9946072432644318 0.40789927692661154 0.05122437100351605 0.24603235429037246 15.21267947517222 0.013140968606994732 0.020392527252783975 3802.7212035119974 -3.5800944862807156 0.09465353283748923 ERPTS(ph)PAPHRPPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERPTSPAPHRPPKR 14 3 M0QZ09;Q8N6T7;Q8N6T7-2 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 ERPT(0.153)S(0.847)PAPHRPPKR;ERPT(0.347)S(0.653)PAPHRPPKR 106.36 0.00067541 1024100000.0 34873.0 40367.0 32681.0 33095.0 37753.0 37719.0 39237.0 30868.0 44517.0 33133.0 True False 34685.24764275454 41710.59119263322 37282.20073165572 37284.82360669322 42560.62077043761 35111.574310975404 37338.956410104125 33171.52690452799 33546.38184723838 31018.423573411572 1.1182143915426477 1.3447037723859951 1.201937314558221 1.2020218731764658 1.3721077948951537 1.131958696349495 1.203767055464108 1.069413692995089 1.0814986057509939 1.0 14.920837746754753 1.7380100790531334 1.0788989652432452 1.017420227899761 1.2445432954869795 0.5364612981268767 0.07626220112747081 0.3470725960765747 0.7539519543772446 0.0610269542399173 0.024289990719672104 54.702865812074116 -1.7380100790531334 0.22712306758721845 ERQEGEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERQEGEAK 8 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;A0A494C0Y7;E7ESD9 Q92878-2 RAD50 DNA repair protein RAD50 0 90.696 0.011868 150300000.0 59013.0 72307.0 48153.0 44647.0 62827.0 36757.0 55799.0 54124.0 70286.0 84930.0 False True 58695.28056496066 74713.69478449551 54932.52384662089 50299.30562223997 70827.64604519594 34216.07510667098 53099.789197120095 58163.007716103195 52964.95708414753 79509.69468776888 0.7382153936756327 0.9396803129214991 0.690890891511262 0.6326185230588944 0.8908051568218572 0.430338403902015 0.6678404363850303 0.7315209540736737 0.666144641758953 1.0 16.27884315976079 -1.4597589824630546 2.967865338339896 1.0072064200308972 0.7105294566454048 0.3022609280061872 0.13227689728060557 26106480.419182688 30152307.634152774 1557516.74514003 0.03135413942748886 0.03469293301143489 1.4597589824630546 -0.29667696338549243 ERQEQEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERQEQEEAR 9 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 0 163.84 5.719600000000001e-05 210250000.0 109210.0 131330.0 124990.0 133110.0 135930.0 109470.0 125750.0 118430.0 163830.0 128160.0 False True 108622.02549437157 135701.23965933864 142587.50556744446 149961.71235192433 153239.87977976826 101902.59656466164 119666.99208835023 127267.84797535457 123456.2917095282 119980.71907670388 0.9053290089462568 1.1310253906095078 1.1884201617118832 1.249881760218936 1.2772042121351326 0.8493247694199526 0.9973851882971873 1.0607358328465426 1.0289677596498015 1.0 16.872443057542597 2.744737618214592 24.999746849311364 0.9976198897853786 1.156939378779758 0.3636740143971753 0.10725472884751551 605.7324538784984 2451540.3284484227 0.03488754948072123 0.03618417404302822 555.5685055958664 -2.744737618214592 0.1593194889943793 ERQEQLER ddPTM_BT-474_Trastuzumab_2h_R1 4 ERQEQLER 8 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;A0A0U1RQP7;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 0 ;;; 163.64 0.00030529 578060000.0 384916.0 425788.0 403240.0 422229.0 409545.0 442178.0 446199.0 362254.0 474972.0 484394.0 False True 382843.6550241876 439960.09618571855 460012.68697508785 475683.1481078855 461698.12818660395 411611.27563505096 424614.64972429257 389287.23296853923 357921.51489872445 453479.560209432 0.8442357464741688 0.9701872692619934 1.014406662039274 1.0489627093406353 1.0181233482130405 0.9076732707532731 0.9363479349062422 0.8584449380447344 0.789278164452273 1.0 18.79067799972413 2.2961570207573674 1.855600906666805 0.8746153470397598 0.9823170611569289 0.2160503860655838 0.07280087599915756 0.44919457568663856 3.1376920424242476 0.03545036466911432 0.02397717779283221 197.76845499428154 -2.2961570207573674 0.107701714117169 ERRPS(ph)PGEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERRPSPGEMR 10 2 A0A0G2JHC2;Q6NYC8-2;Q6NYC8;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 ERRPS(1)PGEMR 113.99 0.0011146 291290000.0 130900.0 160740.0 123100.0 173400.0 156880.0 157280.0 174890.0 132340.0 215660.0 193250.0 True False 130195.24894435712 166090.1337306182 140431.40999561895 195352.42222089742 176857.7380993896 146407.60379729618 166429.9025553205 142215.88280890367 162513.48269594615 180916.6195503512 0.7196422819967752 0.9180479612288653 0.7762217221648631 1.0797925735425793 0.9775649055291353 0.8092545845770086 0.9199260022045742 0.7860852317623773 0.8982783510981796 1.0 17.464965418833458 -2.278378912198102 0.011599301728619069 1.8906338696714693 3.2182540459469314e-06 0.10479347502118563 0.10225547810543242 19691.478581586813 29.54924835036554 2664.8836410891163 2171.5588732834085 0.005267700657996562 2.278378912198102 -1.8906306514174234 ERRT(ph)PS(ph)DDEEDNLFAPPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERRTPSDDEEDNLFAPPK 18 2 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 2 ERRT(1)PS(1)DDEEDNLFAPPK;ERRT(1)PS(1)DDEEDNLFAPPK;ERRT(1)PS(1)DDEEDNLFAPPK 175.57 3.3469e-12 931580000.0 1529240.0 1387070.0 1241250.0 1351800.0 1433340.0 1703120.0 1681280.0 1652550.0 2203960.0 1801890.0 True False 1521006.7417545381 1433237.7864484775 1416007.2108615905 1522937.7413968223 1615867.3529282191 1585387.3231132417 1599950.0632866921 1775871.6724788677 1660823.5895509466 1686891.8375243584 0.9016622808411539 0.8496322968471189 0.8394179041969213 0.9028069894699644 0.9578962426539611 0.9398274909195824 0.9484603741012465 1.0527478010001483 0.9845465800512326 1.0 20.6859360411892 2.8249315806256523 0.8085590169348049 1.0141508763608615 0.8589831156971611 0.7598418418887698 0.030905466549480166 0.2917852310179088 0.41676482316691016 0.020313812206977224 0.021333718595419316 668.2386340046228 -2.8249315806256523 -0.15516776066370042 ERS(ph)AEKTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSAEKTEK 9 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ERS(1)AEKTEK;ERS(0.983)AEKT(0.017)EK 145.0 5.1248e-05 583760000.0 687760.0 544660.0 459880.0 503120.0 505220.0 485390.0 726420.0 706580.0 1388450.0 804570.0 True False 684057.1765773197 562788.6788460775 524627.1066513826 566814.9404139437 569556.7723264513 451836.1317851574 691280.2894061174 759308.5875405389 1046285.1017768064 753221.6537729682 0.9081751343058233 0.7471753845989537 0.696510919492913 0.7525207720392886 0.7561609115636548 0.5998714050795827 0.9177647588109292 1.0080811985915177 1.3890799561269274 1.0 19.52271494988262 1.7050576213463493 2.2549815122698718 1.1880215582082394 0.7462421328520585 0.6748653060897679 0.12142788962238732 0.14275678728370528 1.5442400501661493 0.07692231111051936 0.03198133517422645 50.705797927743355 -1.7050576213463493 -0.44177942535618087 ERS(ph)DS(ph)GGSSSEPFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 ERS(0.825)DS(0.63)GGS(0.479)S(0.062)S(0.004)EPFDR 126.14 0.0010296 703940000.0 598890.0 607680.0 453740.0 529020.0 541790.0 658250.0 557240.0 561150.0 783880.0 592730.0 True False 595665.6427829341 627906.2614496826 517622.64802121994 595993.877758357 610783.745059079 612746.7268538289 530284.1723364785 603025.8624619634 590703.2774538542 554901.463938316 1.0734620135173216 1.1315635338087378 0.9328190348381563 1.0740535329072567 1.1007066745222627 1.1042442067190925 0.9556366432571279 1.086726025521888 1.0645192270019277 1.0 19.081872083541846 -4.999999953704809 0.2829051233608527 0.5763245185161704 1.0610218300718781 0.07577800944390789 0.06075213394804287 680.5782121083445 6.488529604419596 169.73701457192004 0.06654769756741122 1.0000001065986218e-05 4.999999953704809 0.4846973115557077 ERS(ph)ESLDPDSSMDTTLILK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERSESLDPDSSMDTTLILK 19 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 ERS(0.5)ES(0.5)LDPDSSMDTTLILK;ERS(0.578)ES(0.422)LDPDSSMDTTLILK;ERS(0.5)ES(0.5)LDPDSSMDTTLILK 148.28 5.8787e-08 391522000.0 186591.0 175591.0 134334.0 162922.0 156016.0 166174.0 159522.0 134260.0 218482.0 179333.0 True False 185586.41478820916 181435.44028799914 153247.05954794036 183547.90849523098 175883.7128207188 154686.78251152002 151805.31142678164 144279.16295846604 164640.03860880854 167887.81440529414 1.1054192077346914 1.0806945157437096 0.9127944162641258 1.0932771335752347 1.0476264369975175 0.9213699222868802 0.9042068476769368 0.8593784097407153 0.9806550832292973 1.0 17.35713799515229 2.731674052258322 7.894973246759115 0.9166013987597452 1.0448834296798994 0.4457271431983464 0.06264902645064174 0.11643132353006422 64.96945284033043 0.01997807176472109 0.019695105734421174 539.1058596127273 -2.731674052258322 0.12828203092015422 ERS(ph)GS(ph)ESSVDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSGSESSVDQK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ERS(0.977)GS(0.652)ES(0.284)S(0.087)VDQK;ERS(0.998)GS(0.919)ES(0.049)S(0.033)VDQK 158.91 0.00086291 570820000.0 1653670.0 1370390.0 1203780.0 1167020.0 1335920.0 1542040.0 1752770.0 1595090.0 1907440.0 1609610.0 True False 1644766.8244600075 1416002.602731752 1373261.7605566685 1314764.612342745 1506041.4933817964 1435442.4043717086 1667981.8188683686 1714123.7155029017 1437376.9703865126 1506883.3117435484 1.0915024485584888 0.93968961743518 0.9113258802818167 0.8725059213918089 0.9994413513274775 0.9525902856478127 1.1069084154488513 1.137529165094784 0.9538741050382905 1.0 20.523136272864544 2.248923422003713 24.682173436781397 1.0708722975541276 0.9556422161523243 0.23694210628211765 0.07346356566749956 195.18700325902563 464897.3657262902 0.026013518378788562 0.0215341097558304 177.38766703351476 -2.248923422003713 -0.11523008140180335 ERS(ph)HERPDRK ddPTM_BT-474_Trastuzumab_2h_R1 4 ERSHERPDRK 10 3 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 ERS(1)HERPDRK;ERS(1)HERPDRK;ERS(1)HERPDRK;ERS(1)HERPDRK 90.444 0.0077262 1239070000.0 386871.0 301789.0 262788.0 360986.0 300523.0 373763.0 386393.0 372476.0 541770.0 432420.0 True False 384788.1295214088 311833.86442969734 299786.2662057571 406686.7905872718 338792.8227106248 347925.6435534638 367701.694425399 400272.05051480414 408258.0428460664 404822.5853866127 0.950510528343989 0.7702975962467373 0.7405374033651209 1.0046049930709244 0.8368920977743168 0.8594521553711948 0.9083033103853072 0.98875918726851 1.0084863285386432 1.0 18.626930255863073 1.8629907587059757 1.9847114003140525 1.0063147996226405 0.8555676283753075 0.42410942358205383 0.07224367405750211 0.3109660916562938 2.3001596653237106 0.046489709322069556 0.021435799854736228 72.94419883912018 -1.8629907587059757 -0.15074717124733295 ERS(ph)KDAS(ph)PINRWS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSKDASPINRWSPTR 16 3 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 3 ERS(1)KDAS(0.984)PINRWS(0.594)PT(0.422)R 72.676 0.072517 569660000.0 340830.0 288320.0 223440.0 256150.0 266830.0 415580.0 405730.0 382110.0 649420.0 361890.0 True False 338995.0091497727 297916.5569068796 254898.40982470414 288578.5637363487 300809.2188746823 386851.9327700939 386103.2898608848 410624.9885152647 489379.142782163 338793.8703703835 1.0005936907275486 0.879344589620777 0.752370193551727 0.8517821276425771 0.8878827073991192 1.1418504483188299 1.13964071852534 1.2120201232281813 1.4444746070734793 1.0 18.37004824737656 2.6451306456792065 2.0599236481848218 1.2172591821779266 0.8592129123562732 0.6425834220467828 0.11699125998151341 0.1948962377048778 1.637257553191538 0.04359219050260997 0.0403919887877823 441.70330179059005 -2.6451306456792065 -0.35804626982165344 ERS(ph)PALK ddPTM_BT-474_Trastuzumab_2h_R1 16 ERSPALK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK 109.15 0.004296 126354806100.0 33738370.8 29659611.1 26918759.0 24665953.2 26623128.7 29113091.4 32411632.4 30268873.5 42031415.5 31075693.6 True False 33556727.160298206 30646813.325849958 30708686.285152387 27788660.346062824 30013426.332298186 27100571.91636361 30843757.916352373 32527690.54279524 31673336.342137475 29092416.22920819 1.153452738195322 1.0534296321211432 1.0555564049135766 0.9551857132500249 1.0316580821556278 0.9315338988294548 1.0601992517000314 1.118081436980752 1.0887145327701622 1.0 24.794139786608326 -0.17904447040506677 7.049498953952697 1.0000047181195695 1.0487861465140589 0.052140814931115 0.06352272615030932 4395757.464722843 623555.9239080158 0.06493732553070505 0.015749614847400686 0.6621486982616858 0.17904447040506677 0.0487814283944894 ERS(ph)PALKS(ph)PLQSVVVR ddPTM_BT-474_Trastuzumab_2h_R1 7 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 ERS(1)PALKS(1)PLQSVVVR;ERS(1)PALKS(0.998)PLQS(0.002)VVVR;ERS(1)PALKS(0.974)PLQS(0.026)VVVR;ERS(1)PALKS(0.9)PLQS(0.1)VVVR;ERS(1)PALKS(1)PLQSVVVR;ERS(1)PALKS(0.999)PLQS(0.001)VVVR;ERS(1)PALKS(0.997)PLQS(0.003)VVVR 162.98 4.2309e-09 7124340000.0 6936030.0 5504960.0 4974600.0 5078430.0 5104690.0 6273210.0 5784060.0 5923790.0 8871700.0 6838830.0 True False 6898687.185145372 5688189.265781415 5674980.44000167 5721358.717296842 5754742.013631908 5839557.758247936 5504262.920545063 6365853.290196124 6685388.409689431 6402370.0143830655 1.0775208508173253 0.8884505664313015 0.8863874514051362 0.8936313747008815 0.8988455838546903 0.9120931381862093 0.8597227133357827 0.994296373982618 1.0442052544090015 1.0 22.610174626790243 1.5806760996419627 5.560456051582873 1.0209665163405026 0.9128258652703223 0.3755586333178693 0.057318311326422594 0.1370514853142074 8.918944379453766 0.031017942788023504 0.014329250707037847 38.07817273560589 -1.5806760996419627 -0.10814065107018034 ERS(ph)PALKSPLQSVVVR ddPTM_BT-474_Trastuzumab_2h_R1 6 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ERS(0.905)PALKS(0.095)PLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR 198.61 3.171e-11 18755680000.0 3958620.0 6064200.0 5476950.0 6348710.0 6012970.0 6242400.0 6711150.0 5962190.0 10313680.0 7254520.0 True False 3937307.2297640326 6266043.2311136825 6248056.953497199 7152456.035052096 6778686.087834571 5810877.581028998 6386506.035417337 6407118.893187375 7772011.7602315005 6791530.322692956 0.5797378562248433 0.9226261142023572 0.9199777747616298 1.0531435030413037 0.9981087863488634 0.8556065135441945 0.9403633249015636 0.9433984078343692 1.1443682632561327 1.0 22.69530526017164 4.889950475985708 1.9788524901272422 0.9756885299494874 0.3368077744176957 0.7214937450612524 0.07444418985913033 0.6816888389875467 2.019758861519114 0.01901639957976842 0.9039857273933813 77615.86036885099 -4.889950475985708 -0.6388807555317917 ERS(ph)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERSPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR 40 3 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 ERS(1)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR;ERS(1)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR;ERS(0.999)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR;ERS(0.999)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR 172.0 1.1650000000000002e-18 2429280000.0 124583.0 144306.0 132493.0 138803.0 151802.0 145417.0 160474.0 144793.0 157533.0 148800.0 True False 123912.25897047251 149109.1379751808 151146.86275019922 156375.44556820786 171133.0848990538 135364.66506479777 152711.25954978846 155598.18890395618 118711.10298405109 139303.45660591056 0.8895131677961177 1.0703907972435351 1.085018752820999 1.122552515050606 1.2284913028625646 0.9717250983063856 1.0962488890839843 1.1169729215273059 0.8521762910728394 1.0 17.087871531129277 -0.20930028071742868 13.418783202963294 1.0000023482241438 1.0615070363003307 0.003979611927717008 0.10862206342740821 0.0 0.0 0.10080242075629979 0.02375935842559973 0.6175892377542681 0.20930028071742868 0.06150468807618692 ERS(ph)PS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSPSPLR 8 1 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 ERS(1)PS(1)PLR;ERS(1)PS(1)PLR 92.866 0.006529000000000001 6966900000.0 395490.0 392160.0 323200.0 321140.0 343500.0 331720.0 450640.0 305540.0 384400.0 402500.0 True False 393360.7257830696 405212.80853427364 368703.7506952397 361796.29107277386 387242.6889159891 308788.9771848874 428840.82158802496 328340.94630068284 289669.77069610375 376812.1054024126 1.0439174329683067 1.0753709945213432 0.9784817032390356 0.960150392956185 1.0276811263864183 0.8194773277124932 1.1380760210186158 0.8713651753571837 0.7687379639429416 1.0 18.523485787910587 3.9742303002219503 0.460023027434807 0.910851858147196 1.1099507650262965 0.1911518463233305 0.09936877672454833 4.26680367921806 1.162939783093173 0.07542763534215045 0.4341006804710608 9423.891997101971 -3.9742303002219503 0.19909890687910048 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 ERS(0.999)PS(0.999)PLRGNVVPS(0.993)PLPT(0.008)R;ERS(1)PS(1)PLRGNVVPS(0.995)PLPT(0.005)R;ERS(1)PS(1)PLRGNVVPS(1)PLPTR 90.397 0.0014812000000000002 6975300000.0 1063850.0 1375040.0 1083250.0 1422730.0 1432550.0 1571980.0 1638140.0 1481080.0 1869030.0 1565860.0 True False 1058122.3498048475 1420807.375170766 1235762.1842222095 1602847.4721242082 1614976.7511109153 1463312.7226428874 1558896.9098974948 1591605.7103718503 1408432.6002188814 1465925.4741998075 0.721811830429126 0.9692221058825178 0.842991138343349 1.0934031097311692 1.1016772540858322 0.9982176777722304 1.0634216659263915 1.0857343967234396 0.960780493283733 1.0 20.48338032986592 5.441868792025573 0.7587916538538272 1.0481158870369065 0.06887538556439841 0.6435252576507875 0.0686783906026639 4.069041081325398 0.8280743846200946 0.023702884283034915 4.334187441827693 276610.5830110601 -5.441868792025573 -0.9792405014725081 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSPSPLRGNVVPSPLPTRR 20 3 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 ERS(1)PS(1)PLRGNVVPS(1)PLPTRR;ERS(1)PS(1)PLRGNVVPS(0.999)PLPT(0.001)RR 119.97 8.3965e-05 1053520000.0 157393.0 298910.0 181266.0 284890.0 305550.0 330090.0 313720.0 261680.0 433460.0 329590.0 True False 156545.61357600614 308859.0386550892 206786.6772076836 320957.04478957015 344459.9813632614 307271.6552482796 298544.1650732182 281207.89038411586 326639.5910664228 308555.28402380476 0.5073502924160871 1.0009844415150608 0.6701770733303345 1.0401929942797823 1.1163639036455024 0.9958398742721706 0.967554861417268 0.9113695501076589 1.058609617073428 1.0 18.235169475453045 5.148487639309157 0.9742800728108316 0.9915312902229032 1.5455329131376737e-15 0.5752756512064123 0.11757641510748405 3.028853143298318 1.330063970586562 0.0353944725960552 3.804179286581219 140762.7164551796 -5.148487639309157 -0.9915312902229017 ERS(ph)PS(ph)PLRGNVVPSPLPT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 ERS(1)PS(1)PLRGNVVPS(0.328)PLPT(0.672)R 119.35 9.8282e-05 2237100000.0 826500.0 1024700.0 893010.0 1121000.0 1062800.0 1202300.0 1322400.0 1091400.0 1534600.0 1399500.0 True False 822050.2158327827 1058806.5200557683 1018738.0458179326 1262918.4850612797 1198141.280290866 1119187.8309097718 1258430.4599414258 1172845.8100169052 1156418.3925864743 1310182.7118277696 0.6274317378879026 0.8081365373678919 0.7775541812765508 0.9639254690664067 0.914484116966709 0.8542227132187155 0.9604999734623678 0.8951772904870094 0.8826390259517418 1.0 20.321336586481525 5.479097114087431 0.7172199859295707 0.9208726257988983 2.0736665050293413e-14 0.7629442762948763 0.050626760581550564 3.367235665805528 0.6081927941242222 0.017867331395147408 3.2019419100577826 301367.9848193426 -5.479097114087431 -0.9208726257988775 ERS(ph)PS(ph)PLRGNVVPSPLPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR 143.36 7.1822e-07 6975500000.0 2553520.0 3289250.0 2513160.0 3014160.0 3156310.0 3480850.0 3753760.0 2946980.0 3325660.0 3700460.0 True False 2539772.1320427414 3398730.6978563895 2866991.0832216884 3395752.3469512165 3558247.369584929 3240227.032539538 3572176.28804426 3166898.6120612253 2506095.654560881 3464293.474676804 0.7331284576805911 0.9810747047559153 0.8275832010707926 0.9802149765236093 1.027120651178922 0.9353211718997999 1.0311413609026068 0.9141542525800809 0.7234074344104705 1.0 21.724129721249838 4.746503448886937 23.93066914066422 0.937129145654419 0.7331282723787745 0.3078052314730284 0.09104148379773978 665.3319264344874 2004466.3229658643 0.021298447117696843 0.22765690456074514 55783.203206616985 -4.746503448886937 -0.20400087327564442 ERS(ph)PS(ph)PPTIQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSPSPPTIQSK 12 1 Q14687;Q14687-2;Q14687-3;H0Y613;H7C3B5 Q14687 GSE1 Genetic suppressor element 1 2 ERS(1)PS(0.996)PPT(0.004)IQSK;ERS(1)PS(1)PPTIQSK 120.39 0.00023607 1788660000.0 1435170.0 1292010.0 1198070.0 1186090.0 1184150.0 1542590.0 1514730.0 1421020.0 1857820.0 1568590.0 True False 1427443.204182378 1335013.771813461 1366747.84218888 1336248.8723874514 1334944.4834930669 1435954.384166269 1441456.7230694762 1527063.728193349 1399985.154512576 1468481.2432625357 0.9720540938003518 0.9091118990716225 0.9307220289394819 0.9099529725137635 0.9090647154111487 0.9778500003009903 0.98159695922774 1.0398932469853412 0.9533558300017634 1.0 20.485893407731275 2.531920957329702 2.8773044019845737 1.000746408461977 0.9247075458293653 0.5856204996472688 0.02691074191414899 0.16885846303035837 2.781180500535142 0.009538621201078061 0.008452907729140724 340.346240205842 -2.531920957329702 -0.07603886263261173 ERS(ph)PS(ph)PSFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 ERS(1)PS(0.984)PS(0.016)FR;ERS(1)PS(0.859)PS(0.141)FR;ERS(0.997)PS(0.818)PS(0.185)FR 93.011 0.0055127 3502000000.0 1530930.0 1791300.0 1486030.0 1655750.0 1621030.0 1629130.0 1578440.0 1656100.0 1795230.0 1565540.0 True False 1522687.6429823115 1850922.337636282 1695250.1071956924 1865367.780232127 1827458.5619024315 1516512.077659518 1502084.8269736425 1779686.5915054013 1352819.6213495482 1465625.8968737738 1.0389333637118805 1.2628886686461789 1.1566731393131864 1.2727448281386236 1.2468792792215655 1.0347197609528367 1.0248760138433939 1.2142843513488188 0.9230320126269297 1.0 20.483085469793945 2.734607312367222 24.937062660246184 1.0646534035616706 1.2014813606042933 0.39466525460260915 0.09404483482954337 389.5390477959049 2457164.9330497133 0.029689071591685445 0.028981323666932596 542.75934834728 -2.734607312367222 0.13682795704262274 ERS(ph)PSPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ERSPSPLR 8 1 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 ERS(0.942)PS(0.058)PLR;ERS(0.665)PS(0.335)PLR;ERS(0.787)PS(0.213)PLR;ERS(0.999)PS(0.001)PLR 81.525 0.01843 1389960000.0 1338676.0 1531570.0 1349050.0 1425720.0 1431220.0 1391380.0 1318330.0 978381.0 1392109.0 1394810.0 True False 1331468.7171568843 1582547.3815963853 1538984.5138471962 1606216.0058176334 1613477.383494442 1295197.1755562178 1254557.341390334 1051392.758338051 1049042.390254896 1305792.0316430812 1.0196636867828746 1.2119444316144754 1.1785831714034036 1.230070307441322 1.2356312064978676 0.9918862607290291 0.9607635143949543 0.8051762706922639 0.8033763147833606 1.0 20.316493712143732 2.4087871441744846 2.0700436124107426 0.860433036665161 1.179637156329208 0.7234950138073746 0.08226805560947496 0.15155327217647938 1.3268876710291673 0.034150216672628235 0.026437516964231727 256.3227443026878 -2.4087871441744846 0.31920411966404705 ERS(ph)PSPPT(ph)IQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSPSPPTIQSK 12 1 Q14687;Q14687-2;Q14687-3;H0Y613;H7C3B5 Q14687 GSE1 Genetic suppressor element 1 2 ERS(0.986)PS(0.046)PPT(0.886)IQS(0.083)K 144.29 0.001578 607000000.0 1141500.0 1085200.0 930340.0 967960.0 992240.0 1311400.0 1178900.0 1128900.0 1398300.0 1303600.0 True False 1135354.290832574 1121320.2259827475 1061323.7853397557 1090503.636752825 1118595.8825327542 1220746.004703547 1121872.1031646612 1213144.250438048 1053707.7012600445 1220403.1319318905 0.9303108629648592 0.9188113309802021 0.8696501652365369 0.8935601755024707 0.9165790002210368 1.0002809504193206 0.919263539899922 0.9940520625489122 0.8634095354967106 1.0 20.218926356759813 2.9804472876483192 22.208722666516756 0.9555952032883824 0.902224872046152 0.2650141912266536 0.0417921536880615 229.04371829023492 260157.4362152495 0.011968834611000515 0.012901659897557939 955.9766566217014 -2.9804472876483192 -0.05337033124223045 ERS(ph)PSPSFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 ERS(0.994)PS(0.005)PS(0.001)FR;ERS(0.908)PS(0.092)PSFR;ERS(0.996)PS(0.004)PSFR 106.79 0.0017437999999999998 1532670000.0 660411.0 676835.0 724411.0 533746.0 590108.0 767124.0 674582.0 676982.0 893313.0 704883.0 True False 656855.4205545599 699363.0438196021 826401.772106712 601318.1888737895 665254.7559558556 714094.523495658 641949.8915065076 727501.8344849407 673167.9809309259 659896.7634593014 0.9953911837833569 1.0598067493973014 1.2523197837409603 0.9112306987559203 1.008119440484094 1.0821306650334845 0.9728035157215911 1.1024479506025169 1.0201110510105464 1.0 19.331880816339794 3.7164296152465033 24.999297736951483 1.0229271383606535 1.098236061331903 0.20555726376256456 0.07833622088404442 1414.5512476997453 1597884.2184980267 0.020829282901193798 0.03229058260014372 5205.106444270749 -3.7164296152465033 0.07530892297124958 ERS(ph)PYK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSPYK 6 1 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;F8VWU8;F8VPY7;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3;Q8NEY8-5 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 1 ERS(0.998)PY(0.002)K;ERS(0.998)PY(0.002)K 59.8 0.080386 597420000.0 1303360.0 988660.0 873670.0 785460.0 829890.0 830630.0 1054530.0 1046890.0 1493910.0 1110450.0 True False 1296342.8545769101 1021566.9504424091 996675.1419242279 884899.1554649724 935571.5723565929 773210.5031927002 1003518.3552041976 1125014.2477997062 1125755.897868407 1039580.1302959252 1.2469869486711864 0.9826726393391259 0.9587285413395848 0.8512082230862554 0.8999513794961381 0.743771913928943 0.9653112116701746 1.0821813682409085 1.082894781326718 1.0 19.98756953399002 -0.04956552020972506 7.314875258651077 1.0000000008313865 0.9730798320430045 0.0002167128102325 0.1311977479276132 17993585.820289906 2459861.4233333673 0.1327203926579376 0.0321894234221375 0.8921430155128276 0.04956552020972506 -0.026920168788381993 ERS(ph)PYKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSPYKR 7 2 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;F8VWU8;F8VPY7;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3;Q8NEY8-5 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 1 ERS(1)PYKR;ERS(1)PYKR 99.815 0.005348899999999999 516230000.0 289510.0 254550.0 215090.0 222550.0 208000.0 267380.0 275820.0 290490.0 395760.0 276690.0 True False 287951.3103275851 263022.54287127557 245372.80240420505 250724.80718143415 234487.567087411 248896.6499448181 262477.5328652785 312167.83887833165 298230.25091230456 259031.40731377338 1.111646318543836 1.01540792137483 0.9472704678895436 0.9679320734945582 0.905247628151008 0.9608744071846134 1.01330389078005 1.2051350919782184 1.1513285358136063 1.0 17.982767508366976 1.895843081106887 5.952622958679355 1.1369738094832418 0.9806255660750308 0.4148297539265996 0.0702939557326455 0.1921717620938538 9.131707822980756 0.03125006266837385 0.0189256688117373 78.67614663843024 -1.895843081106887 -0.15634824340821096 ERSDS(ph)GGS(ph)SSEPFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 ERS(0.242)DS(0.897)GGS(0.806)S(0.05)S(0.006)EPFDR 144.25 5.1048e-05 606120000.0 732840.0 677120.0 527750.0 630670.0 685640.0 753680.0 685060.0 708730.0 939670.0 693160.0 True False 728894.4708661783 699657.5298723171 602052.6127147675 710512.7573359482 772952.1898933292 701579.8755718844 651921.0306166613 761619.0314580179 708100.9194329025 648921.935355868 1.1232390695291468 1.0781844344476132 0.9277735578234115 1.094912528956667 1.191132781587115 1.0811468026383466 1.0046216580106029 1.173668187130008 1.0911958447584005 1.0 19.30768540836395 3.514001056975622 24.998868114512764 1.1013996663234609 1.0407051428454173 0.0697190201962834 0.07376112255713892 1229.3626505351478 833317.5661506461 0.019534136235009204 0.030253042583978155 3265.8862701503235 -3.514001056975622 -0.060694523478043605 ERSDS(ph)GGSSSEPFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 ERSDS(0.949)GGS(0.011)S(0.035)S(0.005)EPFDR;ERS(0.002)DS(0.998)GGSSSEPFDR 195.45 2.6483e-08 2283270000.0 716400.0 866410.0 793640.0 931130.0 994690.0 852700.0 888300.0 934690.0 1050520.0 914710.0 True False 712542.9819995223 895247.9330940949 905377.6135574579 1049010.9625290895 1121357.875510466 793754.8560398935 845329.5353644646 1004441.3140596494 791633.4222468025 856332.4246773694 0.832086887598562 1.0454443943675111 1.0572735394184878 1.2250043701478586 1.3094889825443048 0.9269237426563024 0.9871511471528709 1.1729572361318459 0.9244463942201618 1.0 19.70781142799611 4.78129657000423 2.354509863540451 1.0891006267562868 0.753264621195502 0.25872549519862187 0.12113857166474336 0.9074388974867087 5.488947164550868 0.03087486155740084 0.6501354132578026 60436.11932589716 -4.78129657000423 -0.33583600556078486 ERSDSGGSSS(ph)EPFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 ERSDS(0.189)GGS(0.005)S(0.182)S(0.624)EPFDR 265.43 8.6661e-25 1089800000.0 445990.0 568440.0 492400.0 527590.0 547640.0 590310.0 549060.0 503520.0 587100.0 511430.0 True False 443588.839394147 587360.1817707635 561725.6399824758 594382.8399049785 617378.707883412 549503.2591402705 522499.87018711364 541095.2192227525 442417.07173694624 478790.0995427484 0.9264787217149663 1.2267592465502128 1.173218996213439 1.241426755633884 1.2894558773730238 1.147691357162678 1.0912921355017757 1.1301303425854177 0.9240313702381504 1.0 18.869033794871413 1.4191180132517125 2.016193278347757 0.961620413393041 1.1707939994178138 0.3652947769126834 0.09737554690675257 0.3205892335742017 2.3743739013319582 0.08382326020316563 0.026268602124128217 26.249317337597912 -1.4191180132517125 0.20917358602477276 ERSDYDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSDYDR 7 1 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;A0A087X0F4 C9JUL9;Q9BXP5-4;REV__Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 88.294 0.017067 137460000.0 130340.0 174060.0 146270.0 144110.0 140790.0 134880.0 156880.0 136110.0 179250.0 163000.0 False True 129638.26392213535 179853.481878508 166863.54459836867 162354.31122406866 158718.7719722912 125556.06307336783 149291.11506020176 146267.21935257563 135076.23932694198 152597.20044867904 0.8495454932394703 1.1786158681134893 1.0934902089143348 1.0639402999969918 1.0401158835523392 0.8227940139412611 0.9783345606685021 0.9585183668016748 0.8851816345894914 1.0 17.219368969139687 2.9646417360853765 21.76812432302952 0.9330595241419526 1.0583086564185595 0.2903497893258671 0.0899750657080073 148.57160803896238 91467.03485499005 0.026205631797459866 0.027817880865712165 921.8106812274347 -2.9646417360853765 0.12524913227660694 ERSDYDRS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 ERSDYDRSR 9 2 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;A0A087X0F4 C9JUL9;Q9BXP5-4;REV__Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 ERSDYDRS(1)R;ERSDYDRS(1)R;ERSDYDRS(1)R 130.99 0.00027221 520265000.0 144793.0 218584.0 196162.0 220818.0 208201.0 212040.0 237960.0 179310.0 275276.0 253066.0 True False 144013.4505760146 225859.43630318198 223779.90452933055 248773.53615902047 234714.16324599032 197382.17388847066 226448.96570452323 192691.02271773078 207437.91830941878 236915.11121929687 0.6078694171715824 0.9533348680917133 0.9445573284778449 1.0500534764485623 0.9907099721837951 0.8331345893161152 0.9558232252011742 0.8133336101949582 0.8755790934644393 1.0 17.8540106957497 4.741404896739622 24.731974747482788 0.9275030249520982 0.607869282461177 0.6542752690003024 0.07117995942510526 155.36396237951004 1350859.313909112 0.01835605636579286 0.12771837307566217 55132.14589420167 -4.741404896739622 -0.31963374249092125 ERSES(ph)LDPDSSMDTTLILK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERSESLDPDSSMDTTLILK 19 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 ERS(0.178)ES(0.822)LDPDSSMDTTLILK 130.83 1.0167e-05 59506000.0 49848.0 46676.0 34674.0 42047.0 39802.0 45810.0 39490.0 35972.0 52830.0 50979.0 True False 49579.623906633424 48229.58244376218 39555.7978081892 47370.14588882399 44870.54877506311 42643.2625251407 37579.71783355028 38656.41330211483 39810.7543857314 47725.47657468226 1.0388502633189998 1.010562615719323 0.8288193360686739 0.9925546959116848 0.9401802139125489 0.8935115075993268 0.7874141974202062 0.8099743800698168 0.8341614844523205 1.0 15.542471983642734 2.5970869497401727 2.9001501595460915 0.8369112556148589 0.9600735006209393 0.2810775300201033 0.07586514899703736 0.2952541970187316 4.793602678031083 0.026252004807394758 0.024135599911889766 395.4457840175864 -2.5970869497401727 0.12316224500608042 ERSLS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSLSR 6 1 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 ERS(0.006)LS(0.994)R;ERSLS(1)R 125.98 0.046533 1714590000.0 1578220.0 2568880.0 2312290.0 2134730.0 2282380.0 1925430.0 2546230.0 2113280.0 2573050.0 2247830.0 True False 1569723.0388767265 2654383.617879244 2637840.3332150267 2404986.5991212036 2573027.564273872 1792329.5560746929 2423059.127356815 2270983.684618403 1938956.3046035625 2104371.5649359142 0.7459343516288818 1.2613664155645818 1.2535050259982763 1.1428526402819192 1.2227059171236379 0.8517172470581619 1.1514407283062704 1.0791742876869574 0.92139446137337 1.0 21.004958030400456 2.7746758233085558 24.995161836477195 1.024237437131776 1.1409342675806182 0.1221278301866503 0.1581193922913123 1326.7014624050869 918200.9858529996 0.04731180712778432 0.05018022845724509 595.2176807514431 -2.7746758233085558 0.11669683044884227 ERSPALK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERSPALK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;; 98.523 0.010215 1021850000.0 670270.0 631630.0 539170.0 572480.0 600060.0 698180.0 756690.0 723840.0 1037190.0 775090.0 False True 666661.3407939972 652653.4227216021 615080.4494503477 644955.9093023037 676474.0841657291 649916.4599389388 720086.0138634883 777856.6163850441 781588.4221339524 725623.0926120649 0.9187432808872993 0.8994386057535877 0.8476583169868659 0.8888304629068803 0.9322664769813053 0.895666726370848 0.9923692081950638 1.0719843735746493 1.0771272718463605 1.0 19.468860844121846 2.08000095608481 2.761692624217266 1.055910234808729 0.8951515053442749 0.852259142725378 0.028839134813450976 0.09234591529078887 1.3867846931627266 0.01368790005698543 0.008529703958107294 120.2267081365361 -2.08000095608481 -0.16075872946445413 ERSPS(ph)PPT(ph)IQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERSPSPPTIQSK 12 1 Q14687;Q14687-2;Q14687-3;H0Y613;H7C3B5 Q14687 GSE1 Genetic suppressor element 1 2 ERS(0.313)PS(0.688)PPT(0.997)IQS(0.001)K;ERS(0.385)PS(0.662)PPT(0.943)IQS(0.01)K 184.01 0.00037292 1081390000.0 1455630.0 1352310.0 1111950.0 1121390.0 1146050.0 1527340.0 1456610.0 1319120.0 1663560.0 1499000.0 True False 1447793.0498156971 1397320.820861341 1268502.894757339 1263357.8590212935 1291992.6743294585 1421758.580771631 1386148.2095094384 1417559.4327556356 1253597.9285619396 1403332.5366415333 1.031682093882443 0.9957161145892195 0.9039218158463926 0.9002555175160206 0.9206603856142791 1.013130205171609 0.9877546292960465 1.0101379364780854 0.8933006937629054 1.0 20.42042548285647 2.740222665727874 24.976315132924373 0.9844415091729309 0.9475889583537501 0.08329359327733976 0.04929841893853588 353.2331076889685 5308231.343583185 0.016304896127004975 0.01644452689686669 549.8226994334525 -2.740222665727874 -0.03685255081918082 ERT(ph)PCAETPAEPVDWAFAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERTPCAETPAEPVDWAFAQR 20 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 ERT(1)PCAETPAEPVDWAFAQR 118.05 0.0001152 41625000.0 22596.0 28303.0 21742.0 29256.0 24027.0 25411.0 22747.0 28169.0 32589.0 25440.0 True False 22474.345646651615 29245.048245475195 24803.084615148215 32959.806600314754 27086.696030813557 23654.397381059833 21646.64070802148 30271.113819283677 24557.877620227147 23816.39741972023 0.9436500932774416 1.2279375310247378 1.0414289020307914 1.3839123533025899 1.1373129005810714 0.9931979620676694 0.9088965189209445 1.2710198476205672 1.03113318053271 1.0 14.539667580418241 2.9802006185272294 24.40562959438376 1.0642073751656878 1.16133611270929 0.11428456746513893 0.13888576636955605 1396.4947665756438 1721386.7305200726 0.042479218651315154 0.04566557581246546 955.4338383799145 -2.9802006185272294 0.0971287375436023 ERVEAVNMAEGIIHDTETK ddPTM_BT-474_Trastuzumab_2h_R1 3 ERVEAVNMAEGIIHDTETK 19 1 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;; 226.44 9.018299999999999e-20 381802000.0 583765.0 609851.0 635670.0 473692.0 669047.0 1206287.0 585009.0 566538.0 953515.0 809026.0 False True 580622.0741023889 630149.521872285 725166.8106573111 533661.3586312644 754246.1696977459 1122899.2189841608 556709.8797185969 608815.9423816733 718534.0046963972 757393.2680379938 0.766605802566049 0.8319977856479631 0.9574508267492733 0.7046027224584387 0.995844829267627 1.4825841030948161 0.7350341007924963 0.8038306756525497 0.9486934133409181 1.0 19.530683072565186 3.209312709415392 24.89638566362522 0.9769397558533893 0.826529932236274 0.16377165398396576 0.1953140304040537 469.2275123001438 399414.21950422367 0.06123290360074095 0.07319796012214802 1619.2455396090606 -3.209312709415392 -0.1504098236171153 ERVEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERVEEK 6 1 Q15843;F8VSA6;E9PS38;S4R3E9;E9PL57 Q15843 NEDD8;NEDD8-MDP1 NEDD8 0 73.975 0.074371 485160000.0 334350.0 278250.0 272040.0 225670.0 266580.0 224360.0 331490.0 278800.0 408340.0 346940.0 False True 332549.8967497775 287511.38304432284 310340.8673859313 254239.79886153372 300527.38285654783 208850.52128663112 315454.5622852265 299605.4717177142 307710.07847566856 324797.9921697224 1.02386684883201 0.8852006169240249 0.9554888726767851 0.782762840260051 0.9252747556995611 0.6430166636544256 0.9712331045457525 0.9224363417898104 0.9473891030547855 1.0 18.309183188561693 -0.45580677689371285 6.34880385367601 1.0000011217195053 0.892352547297016 0.08420267459880515 0.1033207216545881 0.0 0.0 0.09624646653562659 0.022685509717528567 0.3501008966984112 0.45580677689371285 -0.10764857442248932 ERVELCK ddPTM_BT-474_Trastuzumab_2h_R1 1 ERVELCK 7 1 C9JYT6;O95025 C9JYT6 SEMA3D Semaphorin-3D 0 61.962 0.080551 346350000.0 250510.0 297460.0 200060.0 262450.0 254280.0 364040.0 300150.0 185560.0 348560.0 281780.0 False True 249161.28199427723 307360.77628163283 228226.70904730697 295676.14309039555 286661.0507643601 338874.7716579833 285630.59781565215 199407.4294545876 262662.0584647083 263796.559156005 0.944520591138292 1.1651432348663224 0.865161811729081 1.1208491272076733 1.0866747150967706 1.2846064889632556 1.0827684740449357 0.7559136862610148 0.995699334764159 1.0 18.009066221281984 1.7703884487827768 24.999999999971187 0.8930139948553751 1.083523497616369 0.25225791383575846 0.12501610636385854 32.66578181987716 25671.206728622128 0.05689870506670194 0.0315619729787738 58.93705741536187 -1.7703884487827768 0.19050950276099388 ERVNEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ERVNEAR 7 1 P61204;F5H423;P61204-2;P84077 P61204;P84077 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 0 121.67 0.0040268 69180000.0 88301.0 113360.0 95471.0 97526.0 92843.0 77446.0 95247.0 81047.0 124490.0 111660.0 False True 87825.59722716344 117133.11907243295 108912.486951192 109872.78160043382 104666.00572642543 72092.34030827438 90639.538731126 87095.13868832709 93811.10758053574 104533.76320306449 0.8401648858326835 1.1205290566732329 1.0418881289064617 1.0510745833094892 1.0012650699573884 0.6896560316902561 0.8670838583994346 0.8331771096687527 0.8974239968602373 1.0 16.673609465914193 2.9608033434361336 21.48143497140394 0.8468253424420435 1.023482967453995 0.37824561971933757 0.09769599952913037 90.3247633656335 49501.522344302066 0.02804834965151479 0.02976185627483522 913.6994078114825 -2.9608033434361336 0.17665762501195137 ERVPS(ph)VAEAPQLRPAGTAAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ERVPSVAEAPQLRPAGTAAAK 21 2 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 ERVPS(1)VAEAPQLRPAGTAAAK;ERVPS(1)VAEAPQLRPAGTAAAK 170.44 4.2809e-12 1279020000.0 730480.0 594470.0 558380.0 608200.0 552660.0 770390.0 682450.0 626270.0 938860.0 754380.0 True False 726547.1768439586 614256.5745852964 636995.0504740347 685198.0576398487 623037.9751275415 717134.7526029943 649437.2862878299 673005.4475346234 707490.5330794571 706234.8225427892 1.0287614737376374 0.8697625137962948 0.9019592777662003 0.9702127900926807 0.8821966224835833 1.0154338609656206 0.9195769814203433 0.9529485463651823 1.0017780354304064 1.0 19.429788432706818 1.3091768790889495 3.735595893113104 1.002279379698138 0.9384982078741716 0.18165366247239312 0.04968875824155827 0.34632243147677827 8.112834886663173 0.037786335532695677 0.011899374402345387 20.378718914501736 -1.3091768790889495 -0.06378117182396636 ERVPYTDDGLEAIIFTAQGDMR ddPTM_BT-474_Trastuzumab_2h_R1 2 ERVPYTDDGLEAIIFTAQGDMR 22 1 P35250;P35250-2;H7C5P4;A0A087WVY3 P35250 RFC2 Replication factor C subunit 2 0 ; 152.88 3.4644e-08 97197000.0 56234.0 85173.0 73250.0 82465.0 70927.0 83593.0 80106.0 70653.0 92188.0 91076.0 False True 55931.242392184744 88007.93181683427 83562.96329958629 92905.06054467312 79959.13303273462 77814.41266675598 76230.96674536284 75925.48562866445 69469.50265591145 85263.45170591357 0.6559814466003556 1.0321882360614114 0.9800560688981662 1.0896234985315467 0.9377890694423874 0.9126350283724093 0.8940638130426021 0.8904810221681247 0.8147629642712821 1.0 16.379639840413173 2.6494539770072887 3.120988129456354 0.8921305390246772 0.9551519757625885 0.015240372538788738 0.11489632368729827 0.840188733968397 15.846857422021278 0.03880659801128922 0.036702990128908826 446.12234566249356 -2.6494539770072887 0.06302143673791127 ES(ph)ASPTIPNLDLLEAHTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESASPTIPNLDLLEAHTK 18 0 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 ES(0.517)AS(0.434)PT(0.049)IPNLDLLEAHTK 128.55 1.4863e-05 47011000.0 75198.0 80891.0 80120.0 66838.0 69842.0 97561.0 89032.0 89989.0 110600.0 79545.0 True False 74793.14232328314 83583.40803535782 91400.19958447583 75299.68394694544 78735.9647140335 90816.83770389113 84725.1820247316 96704.43613488294 83344.11196407145 74468.36999809928 1.0043612116821161 1.1224014710875394 1.2273694131724477 1.0111633160342757 1.0573074812305296 1.2195357264595574 1.137733806002389 1.2985974600672905 1.1191880789951318 1.0 16.184340158995788 2.7401672260496195 24.983170016677004 1.1821255321535216 1.0904857150611933 0.0881507773898178 0.09414495462498687 253.54746589478907 3942767.2354024937 0.02906140843417816 0.029335314920661774 549.7525165291711 -2.7401672260496195 -0.09163981709232827 ES(ph)EELLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESEELLK 7 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 ES(1)EELLK;ES(1)EELLK;ES(1)EELLK;ES(1)EELLK 144.09 0.0024941 3928690000.0 3800850.0 3154470.0 2501050.0 2581580.0 2401770.0 3247650.0 3327300.0 3015100.0 4665900.0 3550580.0 True False 3780386.64591413 3259464.627032616 2853176.100483692 2908407.7633046387 2707621.1730939015 3023147.59964578 3166345.7874796633 3240102.072367573 3516051.464856787 3323978.944595526 1.13730763910544 0.9805912375986003 0.8583616647520241 0.8749777937172055 0.8145722997121375 0.9094966153624802 0.9525769688246193 0.9747661240862164 1.0577839160424145 1.0 21.664479812857273 1.6019813806791812 2.2285336570683723 1.0272597262159833 0.9222920317147277 0.16652417083451698 0.08387175411717988 0.4851514519589461 5.257640481157857 0.066598085049876 0.024724828195308184 39.992760346914906 -1.6019813806791812 -0.10496769450125554 ES(ph)ESSPGQLSISLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESESSPGQLSISLR 14 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5;P42684-8 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 ES(0.25)ES(0.25)S(0.25)PGQLS(0.25)ISLR 57.434 0.075254 674010000.0 448310.0 1167700.0 421420.0 412780.0 408690.0 458960.0 441320.0 444820.0 1313400.0 434220.0 True False 445896.34877192386 1206566.188610445 480752.2729516949 465037.90567671333 460734.249004587 427233.1754756294 419971.665593882 478014.72715019196 989730.1686583307 406507.7078455547 1.0968951883720104 2.9681262257119565 1.1826399934693197 1.1439829963898154 1.1333960958487772 1.0509841934853275 1.0331210392533139 1.1759056911457262 2.4347143966932134 1.0 18.632923182124895 ES(ph)HTPVSIQEEIVGDFK ddPTM_BT-474_Trastuzumab_2h_R1 3 ESHTPVSIQEEIVGDFK 17 0 Q12830-4;Q12830;E7ETD6;E9PE19;A0A2R8Y7Q1;A0A0A0MR81;F5H176 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 1 ES(0.56)HT(0.44)PVSIQEEIVGDFK;ES(0.549)HT(0.438)PVS(0.013)IQEEIVGDFK;ES(0.551)HT(0.446)PVS(0.003)IQEEIVGDFK 151.42 1.6157e-07 328083000.0 724120.0 636750.0 589350.0 586670.0 586450.0 736470.0 699480.0 613160.0 930600.0 700460.0 True False 720221.4183772944 657943.8388264965 672325.3572779682 660942.36184737 661130.9313385193 685559.5623639028 665643.4801269124 658917.1127633925 701266.0994011285 655756.0431060224 1.098306948062466 1.0033362951717708 1.0252674974880358 1.0079089149019236 1.0081964753340869 1.0454490958508205 1.0150779197917226 1.004820496418756 1.0694008950028815 1.0 19.322799672114137 4.74576495067125 24.90642296609215 1.0194077313748529 1.0983069867893305 0.5602642127755231 0.020823561851703414 561.5899531620961 1941447.7866245662 0.004663422646780654 0.04687054461909557 55688.42698496307 -4.74576495067125 0.07889925541447762 ES(ph)KGSPVFLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESKGSPVFLPR 11 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 ES(0.725)KGS(0.275)PVFLPR;ES(0.826)KGS(0.174)PVFLPR;ES(0.847)KGS(0.153)PVFLPR;ES(0.753)KGS(0.247)PVFLPR 115.12 0.00070612 10108000000.0 6225500.0 6677300.0 5928600.0 6327100.0 5988300.0 7302000.0 7730200.0 7169300.0 9967300.0 7466200.0 True False 6191982.599718071 6899549.893986913 6763295.34768502 7128110.211267821 6750874.509565114 6797229.9270591065 7356260.693768297 7704309.570967742 7510992.469977284 6989700.723864583 0.8858723490945895 0.9871023333560087 0.9676087167213672 1.019801918976398 0.9658316967013971 0.9724636569705576 1.0524428705011915 1.1022374026205881 1.0745799808470884 1.0 22.736799254761845 2.1942491260860923 4.180705993545624 1.071660957873278 0.9693253948970055 0.5469017054434525 0.03996199186783695 0.14481277878842327 5.375357171714622 0.015062442190836032 0.011143683973125155 156.40445745254485 -2.1942491260860923 -0.10233556297627255 ES(ph)KS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESKSSPR 7 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 2 ES(0.748)KS(0.853)S(0.399)PR 52.57899999999999 0.082427 107750000.0 60078.0 91856.0 92856.0 95958.0 96164.0 63481.0 78436.0 76579.0 44786.0 70242.0 True False 59754.54672329333 94913.37143187532 105929.31768117953 108106.27296120457 108409.9153913162 59092.70788820038 74641.75102538243 82293.71384028284 33749.0904016537 65759.0954227983 0.9086886968122249 1.4433497118783267 1.610869447034006 1.6439744535130076 1.648591950578005 0.8986240991951552 1.1350787377088 1.2514423033220752 0.5132231546779016 1.0 16.004902833100388 2.7336356710648833 24.975601727695015 1.0125738109555864 1.4702564690067157 0.44528294616744635 0.2706280167445321 426.81881817712315 2164495.5870197634 0.08877818658229593 0.08608691007230299 541.5463973988215 -2.7336356710648833 0.4576826580511293 ES(ph)MT(ph)KQLPESK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESMTKQLPESK 11 1 Q92539 Q92539 LPIN2 Phosphatidate phosphatase LPIN2 2 ES(1)MT(1)KQLPESK 79.283 0.042747 492840000.0 452400.0 663400.0 602930.0 595240.0 621550.0 699430.0 682820.0 613680.0 626340.0 711910.0 True False 449964.3286663651 685480.8679662314 687817.3032384935 670597.3229686681 700700.7082845212 651080.0503811211 649789.3879742916 659475.9178038981 471986.8995260081 666475.2943031854 0.6751402977912523 1.0285165464128971 1.032022205650731 1.0061848184031972 1.0513528622499342 0.9769005032089594 0.9749639536956289 0.9894979205394172 0.7081836394543038 1.0 19.346191871211087 -0.3535242105532671 6.531763249701791 1.0000000017561832 0.954429330932829 0.006322182299785761 0.1282100253648614 0.0 0.0 0.11755908089687088 0.027708941097411777 0.44307351384409027 0.3535242105532671 -0.0455706708233542 ES(ph)PEGSYTDDANQEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESPEGSYTDDANQEVR 16 0 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 1 ES(1)PEGSYTDDANQEVR;ES(1)PEGSYTDDANQEVR 539.88 0.0 3541300000.0 1465960.0 1374280.0 1190460.0 1010090.0 1076810.0 1391470.0 1322770.0 1216330.0 1348490.0 1367870.0 True False 1458067.434243469 1420022.0790301962 1358066.420336185 1137967.2904331377 1213935.3707470917 1295280.9540680528 1258782.5616278867 1307098.7209985915 1016172.7083402394 1280571.3655075757 1.1386069324340544 1.1088972604563487 1.0605159984956347 0.8886402750244892 0.9479638569506263 1.011486738620496 0.9829850920717311 1.0207152496186742 0.7935307127045297 1.0 20.288356225066977 3.966686758519271 4.1474262450967805 0.9586054510871066 1.1186658369666422 0.5490389944586951 0.06479677206775077 0.16165172226437113 6.205764889726467 0.016706019281865794 0.03413279266957737 9261.61574336106 -3.966686758519271 0.16006038587953564 ES(ph)PGAAATSSSGPQAQQHR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESPGAAATSSSGPQAQQHR 19 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 ES(1)PGAAATSSSGPQAQQHR;ES(1)PGAAATSSSGPQAQQHR;ES(0.6)PGAAAT(0.144)S(0.144)S(0.025)S(0.086)GPQAQQHR;ES(0.992)PGAAAT(0.001)S(0.004)S(0.001)S(0.002)GPQAQQHR;ES(0.999)PGAAAT(0.001)SSSGPQAQQHR;ES(0.724)PGAAAT(0.262)S(0.009)S(0.004)S(0.002)GPQAQQHR 299.25 5.012699999999998e-50 7779161000.0 1282624.0 1259439.0 1180472.0 1146119.0 1286336.0 1397282.0 1258903.0 1223108.0 1496229.0 1294462.0 True False 1275718.4948969227 1301358.6657680483 1346672.1967534393 1291217.5478857714 1450143.2648891932 1300691.1841880318 1198005.0524135204 1314382.529776579 1127503.4113914152 1211848.3269153256 1.0527047540216308 1.0738626582755326 1.1112547394287355 1.0654943520634093 1.196637592907712 1.0733118619710846 0.9885767268111495 1.0846097655820073 0.9303997755737268 1.0 20.208777713927127 1.792009830889909 1.157851804715725 0.9840465827472455 1.0966759995488837 0.41398128294845116 0.052925648247872534 0.48669999990454293 1.2125940594738267 0.04372822324343693 0.0177082870619027 61.945509718894876 -1.792009830889909 0.11262941680163818 ES(ph)PHFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESPHFYR 7 0 Q9HDC5 Q9HDC5 JPH1 Junctophilin-1 1 ES(0.991)PHFY(0.009)R;ES(1)PHFYR 86.13600000000002 0.013291999999999998 723320000.0 648870.0 746270.0 730930.0 693570.0 722450.0 792450.0 735130.0 620800.0 725010.0 716010.0 True False 645376.5560162336 771109.1458202578 833838.5906425489 781375.8908866659 814449.725203366 737669.7967266476 699568.9534306857 667127.2483585264 546341.0001362693 670313.6287929974 0.962797902794149 1.1503706812716283 1.2439529122270767 1.165687011755457 1.2150278469944102 1.1004845568408557 1.0436442336557694 0.9952464334639762 0.8150528001646633 1.0 19.354476741404238 1.885983232630046 1.5639986313928473 0.9151456586710813 1.1519679489495724 0.5475438001883184 0.08388027135863893 0.2796832063151058 1.2814972820039763 0.059224696076384836 0.026113540823849014 76.91007460440537 -1.885983232630046 0.2368222902784911 ES(ph)PSLASR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESPSLASR 8 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9 Q8WWM7 ATXN2L Ataxin-2-like protein 1 ES(1)PSLASR;ES(1)PSLASR 191.45 0.00018998 911110000.0 1673580.0 1589720.0 1406610.0 1300630.0 1409220.0 1585290.0 1518370.0 1487630.0 1698730.0 1539430.0 True False 1664569.6312322172 1642632.8691939681 1604648.461526707 1465289.6246434026 1588675.8138986586 1475702.6336712567 1444920.642363326 1598644.5046320753 1280100.7533157952 1441182.259427669 1.1550028598695499 1.1397814942894873 1.1134250723874124 1.0167274923473644 1.102342055285612 1.0239528165280751 1.002593969576854 1.1092590782146727 0.8882296079776589 1.0 20.45882136711655 7.999999999999923 0.21822702808739713 0.9824527231084581 1.977550060596313 0.5094713899381424 0.055058568855296176 42.99011475906867 0.5474707367817043 0.08407271683759382 15.040593231655341 99999999.99998221 -7.999999999999923 0.9950973374878549 ES(ph)PSPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESPSPAPKPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 ES(0.998)PS(0.002)PAPKPR;ES(0.993)PS(0.007)PAPKPR;ES(0.992)PS(0.008)PAPKPR;ES(1)PSPAPKPR 149.38 1.4199e-05 2162950000.0 1898850.0 1577800.0 1465330.0 1409560.0 1459200.0 1941610.0 1890400.0 1713090.0 2504600.0 1836550.0 True False 1888626.8025820658 1630316.1191997575 1671635.7271233143 1588010.1514745555 1645020.470643991 1807391.0707583148 1798954.129970712 1840929.4746947594 1887374.8899205506 1719339.806650439 1.0984604644624765 0.9482221681215451 0.9722544203637905 0.923616230678835 0.956774492326078 1.051212252381578 1.046305170747704 1.0707188117055215 1.0977323287811687 1.0 20.713423273489493 2.697681278489776 7.159639322412802 1.058296014367053 0.9745796343031942 0.35201655266868814 0.04925197786704319 0.24480563962758028 36.164595179802596 0.01571113602670526 0.014923737238440905 498.5184987299694 -2.697681278489776 -0.08371638006385884 ES(ph)PVSAPLEGLICR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESPVSAPLEGLICR 14 0 O75376;O75376-2;A0A088AWL3 O75376 NCOR1 Nuclear receptor corepressor 1 1 ES(1)PVSAPLEGLICR 153.14 6.790700000000002e-06 71620000.0 64618.0 61741.0 48447.0 46104.0 51272.0 58384.0 67828.0 59849.0 60777.0 64699.0 True False 64270.103867734695 63796.01186177734 55267.91649112709 51940.76167285037 57801.18528704683 54348.05150115297 64546.90051187758 64315.236287064145 45799.32272007563 60569.854428399274 1.061090611398275 1.0532634173191182 0.9124657308935801 0.8575348605839971 0.954289651717335 0.8972788859084809 1.065660486078593 1.0618357414593484 0.7561405447030725 1.0 15.886312323618235 4.253140115484044 23.639214747610144 0.949260047242671 1.0571772202493837 0.2161593813960141 0.08866641993001993 212.64911303156094 344776.9726895117 0.022537134028692278 0.061028993335746615 17911.8364650811 -4.253140115484044 0.10791717300671266 ES(ph)SPKKEETVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESSPKKEETVAR 12 2 Q68DK7;Q68DK7-2;Q68DK7-3;J3KTC2 Q68DK7 MSL1 Male-specific lethal 1 homolog 1 ES(0.577)S(0.423)PKKEETVAR;ES(0.863)S(0.137)PKKEETVAR 81.703 0.013335 760840000.0 412580.0 344690.0 267680.0 247154.0 292420.0 465560.0 437550.0 363910.0 782620.0 397050.0 True False 410358.71512194717 356162.7982804946 305367.0172837308 278443.67105872935 329657.9536908691 433376.93301035877 416384.0348966812 391066.81209753675 589753.7875707198 371709.92906839313 1.1039756622870378 0.958174023419649 0.821519667362839 0.7490886018476435 0.8868688402192597 1.165900878936756 1.1201853981685495 1.0520752380159908 1.5865968096381076 1.0 18.503817700237803 2.7364501001051975 18.285928838960782 1.1713749854000872 0.8937587950174869 0.4006576853064687 0.17123002135135945 4.87151045406779 42203.10932507682 0.054241444311971414 0.05368376766136909 545.0672645413639 -2.7364501001051975 -0.2776161903826003 ES(ph)SPLYSPTFSDSTSAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 ES(0.5)S(0.5)PLYSPTFSDSTSAVK 63.681 0.035459 0.0 51085.0 42711.0 42530.0 44742.0 42727.0 50188.0 51230.0 58615.0 76503.0 51179.0 True False 50809.96403607706 44132.60981565528 48517.854322613086 50406.33261249936 48168.030187229844 46718.62168984417 48751.80918239505 62989.14894093911 57649.86073767948 47912.71240345363 1.0604693720578129 0.9211043917537453 1.0126300910302009 1.052045064534188 1.0053288108931568 0.975077789302461 1.0175130301928166 1.3146646428724986 1.2032268232329084 1.0 15.548120868249232 1.7640969336386683 24.999999999908663 1.2034418976597205 1.0037957347116004 0.45086533190893896 0.081994015042556 10.818401863812712 10598.268779376729 0.03533549525854687 0.01959697350503933 58.08940574166944 -1.7640969336386683 -0.1996461629481201 ES(ph)SPSHGLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESSPSHGLLK 10 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 ES(0.608)S(0.377)PS(0.015)HGLLK;ES(0.497)S(0.497)PS(0.006)HGLLK 179.35 1.3628e-06 792980000.0 1113380.0 1208250.0 1104350.0 1047330.0 1059660.0 1279520.0 1319630.0 1303500.0 1746380.0 1516330.0 True False 1107385.685788147 1248465.8708474524 1259832.8808177232 1179921.870614837 1194601.4199031037 1191069.7940661006 1255794.4554238538 1400773.7890388824 1316008.0492930838 1419556.5212045738 0.7800927044796129 0.879475985773401 0.8874834231670352 0.8311904830767898 0.8415314234120224 0.839043585989384 0.8846385731497619 0.9867685915388891 0.9270557597638851 1.0 20.437008862020267 1.9034122278130756 3.5495166612841333 0.9679835858669259 0.846692730238164 0.7524868069069425 0.03273148237331363 0.11948778419197557 2.59688857984095 0.015875049288004817 0.008809460701753664 80.0593809801181 -1.9034122278130756 -0.12129085562876185 ESAAHDYTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESAAHDYTLR 10 0 Q06124;Q06124-1;Q06124-3;A0A0U1RRI0 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ;;; 161.51 7.050599999999998e-06 2697290000.0 1257310.0 1628660.0 1609140.0 1690010.0 1579200.0 1593250.0 1708700.0 1427680.0 1667630.0 1745630.0 False True 1250540.782660274 1682868.9635542384 1835692.9251043892 1903965.0927193717 1780301.7593482665 1483112.3776070834 1626043.6531321197 1534220.7312121466 1256664.9315971462 1634222.398890968 0.7652206844728896 1.0297674078487014 1.1232821960769508 1.165058742317728 1.0893876871082127 0.907533992076946 0.9949953288093477 0.938807797673875 0.7689681235858452 1.0 20.640172900386627 2.73132649455265 24.61049685867425 0.9261348963427252 1.0464588057661308 0.18418565435951162 0.11687170699726959 786.8622839810824 2676899.9076613304 0.038801340640851584 0.03728897089588524 538.6745959218903 -2.73132649455265 0.12032390942340565 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(ph)PAIR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(1)PAIR;ESAAPAAAPTAEAPPPSVVTRPEPQALPS(0.999)PAIR;ESAAPAAAPTAEAPPPSVVTRPEPQALPS(1)PAIR;ESAAPAAAPTAEAPPPSVVTRPEPQALPS(1)PAIR 272.52 1.0067999999999996e-73 2657950000.0 788040.0 689900.0 646470.0 732040.0 675150.0 765670.0 686300.0 654730.0 856410.0 783860.0 True False 783797.2801994744 712862.904446643 737487.3567820292 824716.1889422486 761126.3505724303 712741.0350933094 653101.0470794018 703589.2772515751 645359.2308060618 733833.3837036907 1.0680861590728044 0.9714233779455375 1.0049792952453276 1.1238466486491363 1.0371923211383363 0.9712573057061982 0.8899854675228468 0.958786139846252 0.8794356391213822 1.0 19.485093011904482 2.592647372791508 3.5427353218939985 0.9303876509716755 1.03968373887084 0.5278556158850454 0.04880998202566191 0.19672191281122497 4.52177819694481 0.0166736083755493 0.015422445589839783 391.423929760306 -2.592647372791508 0.10929608789916445 ESADPLGAWLQDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESADPLGAWLQDAR 14 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;; 196.38 5.7982e-08 554861000.0 433004.0 474949.0 439998.0 460139.0 448152.0 500536.0 478405.0 442488.0 523722.0 483656.0 False True 430672.75457526714 490757.390352267 501945.89386882423 518392.55022088526 505221.5007949877 465935.12445500685 455262.7224654243 475508.70146853564 394657.7306152565 452788.6600012659 0.9511562294295601 1.0838553031581997 1.1085655145767586 1.1448885451756587 1.1157998099898863 1.0290344383927466 1.0054640557123304 1.05017802669176 0.8716157569276429 1.0 18.788478301058895 1.800996986616434 1.1942508437458565 0.9544687965632697 1.0812598529089792 0.35710672058202375 0.06337780289681506 0.5108491844022304 1.3554097339258318 0.052522234365885566 0.021317530295430716 63.24074633562286 -1.800996986616434 0.12679105634570953 ESAFTSPISVTKPVVLASGAALSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESAFTSPISVTKPVVLASGAALSSPK 26 1 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 ESAFTSPISVTKPVVLASGAALS(0.253)S(0.747)PK 150.55 8.1313e-08 368670000.0 567230.0 398140.0 348930.0 335050.0 321440.0 483820.0 459180.0 515300.0 790690.0 560070.0 True False 564176.0967051778 411391.8492192875 398056.31104607054 377467.2956465492 362373.4786758529 450374.6621897751 436967.7091620565 553754.3026403803 595835.0442031792 524325.853099949 1.0760028203256125 0.7846110329807949 0.7591773487663435 0.7199097534765179 0.6911226607145307 0.8589594801153606 0.8333895927095551 1.0561262607335549 1.1363831111520624 1.0 19.00010415746357 1.7467527088784374 3.296290485608353 1.0798027419147134 0.803635494753709 0.5382176881616805 0.10436006688602209 0.16182425158537675 3.6618306394978775 0.0596722771451689 0.028760137371710317 55.8152287383628 -1.7467527088784374 -0.2761672471610044 ESAS(ph)PTIPNLDLLEAHTK ddPTM_BT-474_Trastuzumab_2h_R1 5 ESASPTIPNLDLLEAHTK 18 0 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 ES(0.003)AS(0.993)PT(0.004)IPNLDLLEAHTK;ESAS(0.958)PT(0.042)IPNLDLLEAHTK;ES(0.006)AS(0.603)PT(0.391)IPNLDLLEAHTK;ES(0.001)AS(0.993)PT(0.006)IPNLDLLEAHTK;ES(0.001)AS(0.997)PT(0.002)IPNLDLLEAHTK 323.18 5.074299999999998e-62 2293655000.0 2487400.0 2833710.0 2854290.0 2528870.0 2351841.0 3302630.0 3010800.0 2947130.0 4226470.0 3269990.0 True False 2474008.1147761177 2928028.3243361292 3256149.22206657 2849024.6827091156 2651334.0108962646 3074326.9616547823 2865156.101627071 3167059.8058229075 3184913.1002964634 3061296.438620713 0.8081569898179473 0.9564667725074582 1.0636504132653188 0.930659522797721 0.8660820877872384 1.0042565374818586 0.9359289957943392 1.0345485546149353 1.040380493739916 1.0 21.54571132337587 1.7305397306505537 6.374053328399102 1.0275952651130442 0.9428914524573528 0.26350203986604115 0.06619187075728349 0.1997431833037935 21.750862803418592 0.033539906783529305 0.01742898272004885 53.769962135626116 -1.7305397306505537 -0.08470381265569138 ESAWS(ph)PPPIEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESAWSPPPIEIR 12 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 ES(0.028)AWS(0.972)PPPIEIR;ESAWS(1)PPPIEIR 128.96 0.00025455 48866000.0 106217.0 130451.0 124889.0 112635.0 114640.0 137579.0 124343.0 125312.0 157939.0 137187.0 True False 105645.13947381801 134792.98267570528 142472.285645352 126894.57945127336 129238.72447548443 128068.48755613045 118328.0540536122 134663.41776144275 119017.04972417241 128431.60820830008 0.8225789659386242 1.049531221761919 1.1093241580708053 0.9880323171338488 1.006284405205573 0.9971726535450627 0.9213312494047324 1.0485223975630318 0.9266959386753265 1.0 16.970640781207702 2.4612518746065115 24.694943092161008 0.9806327825036326 1.0038799182329632 0.009394416831001617 0.0759864701426974 1176.3967637804503 1830621.1958459178 0.026170600395600728 0.021900539184882713 289.23568551599425 -2.4612518746065115 0.02324713572933057 ESCSS(ph)PSTVGSSLTTR ddPTM_BT-474_Trastuzumab_2h_R1 3 ESCSSPSTVGSSLTTR 16 0 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;H0YEP9 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 ESCS(0.022)S(0.972)PS(0.002)T(0.004)VGSSLTTR;ESCS(0.022)S(0.974)PS(0.001)T(0.003)VGSSLTTR;ESCS(0.004)S(0.983)PS(0.004)T(0.01)VGSSLTTR 352.75 2.9119e-87 1324350000.0 1167810.0 1214670.0 1120700.0 1200520.0 1244910.0 1265270.0 1207110.0 1163360.0 1485940.0 1316010.0 True False 1161522.6407158878 1255099.5566664783 1278484.8187009753 1352505.7089079127 1403441.909340329 1177804.863025208 1148717.4776919938 1250175.8306223808 1119749.9975758784 1232021.115107153 0.9427781930627595 1.0187321802169909 1.037713398759226 1.097794260441941 1.1391378703913422 0.9559940560943797 0.932384570042118 1.0147357178319536 0.9088724079850611 1.0 20.232595551330473 2.648509106222936 24.999982359547765 0.9650760971792006 1.0479380583197992 0.3681365095398289 0.05551133221120814 78.50090247387465 21790.468716868138 0.01880786566237075 0.017732226347810607 445.1527967207445 -2.648509106222936 0.08286196114059863 ESDFYLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESDFYLR 7 0 P61326;P61326-2 P61326 MAGOH Protein mago nashi homolog 0 ;;; 197.62 0.00097263 2829660000.0 2344000.0 3044920.0 2642330.0 2737540.0 2521990.0 2706690.0 2714510.0 2418620.0 3124940.0 2839220.0 False True 2331380.1644428805 3146268.321506994 3014347.096455915 3084112.2833136986 2843150.477494134 2519582.8911629124 2583198.780864791 2599109.7059035106 2354840.4090506798 2658018.5488214665 0.8771120748862292 1.1836893775259814 1.1340579612555526 1.1603050267204331 1.0696503524231435 0.9479177232529341 0.9718512995366982 0.9778373093204803 0.8859382904211814 1.0 21.34191974173336 2.8192903901424784 4.284738686095796 0.9583429615823724 1.1001896655777705 0.36932074861849773 0.08330225579534173 0.22966035752374855 7.824781903059625 0.02536481102955388 0.026799559654888755 659.6147979476764 -2.8192903901424784 0.14184670399539812 ESDGFREEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ESDGFREEK 9 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ;; 113.93 0.0015697 3315500000.0 4378720.0 4474710.0 3984390.0 4493290.0 3990680.0 4797710.0 5043230.0 4575440.0 7008810.0 4997970.0 False True 4355145.458041523 4623648.017330687 4545357.479061279 5062140.053292598 4498869.443386485 4466055.600294536 4799269.697890493 4916882.566413551 5281582.688742338 4678995.275622609 0.9307864619423037 0.9881711232793331 0.9714387836086141 1.0818861219343732 0.9615033096582566 0.9544902991380477 1.0257051813868052 1.0508415325893414 1.1287856425628782 1.0 22.157767341335227 1.8666723964171998 2.6831396548525874 1.0678677892851358 0.9852499412038912 0.34678778688358614 0.047787169081926525 0.2977226039720346 3.861338019820502 0.026306763874887628 0.013282876377934183 73.5651960027132 -1.8666723964171998 -0.08261784808124462 ESDHIHIIALAQALSVSIQVEYMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESDHIHIIALAQALSVSIQVEYMDR 25 0 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5H3F0;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 157.07 1.2387e-08 28672000.0 13531.0 14620.0 12085.0 12269.0 12423.0 14735.0 15219.0 10918.0 15239.0 11462.0 False True 13458.150599435436 15106.617862023379 13786.462955296949 13822.254142031094 14004.995413110133 13716.404132459038 14482.798827774162 11732.756600480641 11483.552642138187 10730.485346888097 1.254197751953352 1.4078224212294725 1.284793978055718 1.2881294457048607 1.3051595487404177 1.2782650261422588 1.3496872098123929 1.0934040932158962 1.0701801708781498 1.0 13.389427711162329 1.6452874245666893 4.146960229193297 1.048398280237976 1.3103526825251683 0.873707400887545 0.04465488441244073 0.05346434243219204 2.1299201905362493 0.02459315358671528 0.011284317920484675 44.18627840223695 -1.6452874245666893 0.26195440228719225 ESDKEDGRES(ph)PSYDTPSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESDKEDGRESPSYDTPSQR 19 2 C9JRP1;A0A0A0MST8;E9PFN4;Q9Y6M7-11;Q9Y6M7-14;Q9Y6M7-10;Q9Y6M7-2;Q9Y6M7-9;Q9Y6M7-6;Q9Y6M7-13;Q9Y6M7-12;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-7 C9JRP1 SLC4A7 Anion exchange protein;Sodium bicarbonate cotransporter 3 1 ESDKEDGRES(0.999)PS(0.001)YDTPSQR 150.06 4.1411e-08 94155000.0 183730.0 138750.0 133710.0 131340.0 153940.0 216820.0 164350.0 159590.0 252450.0 177960.0 True False 182740.81809432193 143368.2098738537 152535.20577184553 147967.6305334065 173543.34652613473 201831.7437393802 156399.7626220305 171499.4161815999 190237.08015668901 166602.44044077862 1.096867594561317 0.8605408749988636 0.9155640539735461 0.8881480375793407 1.041661491074156 1.2114573064199763 0.9387603339317541 1.029393181323547 1.1418625060556162 1.0 17.34605000830967 3.155444479724349 6.731739129086937 1.059362697973127 0.9331687630780705 0.2935258696869253 0.09134935590971892 0.268027300574282 17.821995860893637 0.02623678307761766 0.03154989988672379 1430.3571120505924 -3.155444479724349 -0.12619393489505648 ESDLFLLDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESDLFLLDSR 10 0 H0Y4B5;B1AKZ9;B1AL00;P18075 H0Y4B5 BMP7 Bone morphogenetic protein 7 0 105.2 0.006005300000000001 21176000.0 36497.0 46877.0 40372.0 43868.0 39462.0 43006.0 45596.0 41343.0 46571.0 45352.0 False True 36300.5042071979 48437.27260725507 46056.026680285344 49421.684302112655 44487.251790401024 40033.09644523469 43390.347286365126 44428.224595500185 35094.201069428294 42457.596532199335 0.8549825513478613 1.1408387794754427 1.0847535056619844 1.1640245406880683 1.047804290020572 0.942895964798056 1.0219689956650844 1.0464140277419225 0.8265706006889314 1.0 15.373735084065949 2.9172975959962497 6.321056199478439 0.9819140239639147 1.0729253083236818 0.17205960668005327 0.09608820972670726 0.43023849525745445 26.913112670365 0.028892821335390503 0.03084309293900217 826.6041778872495 -2.9172975959962497 0.09101128435976713 ESDLSHVQNK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESDLSHVQNK 10 0 O43390;O43390-3;O43390-2 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;; 161.17 7.1537e-06 2616640000.0 4170450.0 4754240.0 4389510.0 4419930.0 4326750.0 5219620.0 5159400.0 4506790.0 5950580.0 5196010.0 False True 4147996.76058055 4912482.00440123 5007514.853695122 4979492.684814371 4877735.965843536 4858799.955063849 4909820.111177999 4843109.554815914 4484139.29268683 4864396.1932720365 0.8527259285166079 1.0098852579474717 1.0294216701799563 1.023661002716334 1.0027423285525034 0.9988495513141121 1.0093380382890662 0.9956239916301298 0.9218285506614077 1.0 22.21382930690317 4.740667574096371 24.924911200258208 1.0009350831242387 0.8527258753568726 0.7121843017652104 0.027880477389663257 98.24419105693272 1162127.1656125986 0.006685572707318099 0.044621731345697656 55038.624806856795 -4.740667574096371 -0.14820920776736612 ESDQTLAALLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 10 ESDQTLAALLSPK 13 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK 254.53 8.6253e-24 8838707000.0 5036190.0 3930240.0 3578599.0 3360140.0 3359290.0 4617010.0 4604490.0 4298600.0 6709790.0 4201550.0 True False 5009075.712613311 4061055.6625197474 4082434.63345988 3785533.3794770855 3787075.669428214 4297846.965972493 4381753.227840056 4619383.35984851 5056252.161079619 3933403.4818720724 1.273471113680227 1.0324533654469945 1.0378886001079344 0.9624065766259481 0.9627986772477725 1.0926534706597064 1.1139851906966316 1.17439855360324 1.2854649121002801 1.0 21.90734675241136 2.1476803221281435 2.3499832172151005 1.1684286061849383 1.0468318871301618 0.13241159863224494 0.10456884918217527 0.481073659357421 5.290166731882158 0.049679268738177254 0.03138537040044961 140.50129337520642 -2.1476803221281435 -0.12159671905477643 ESDSAEGDEAES(ph)PEQQVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESDSAEGDEAESPEQQVR 18 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 ESDSAEGDEAES(1)PEQQVR 419.19 2.6276999999999985e-128 0.0 96050.0 100680.0 86978.0 94092.0 94035.0 101820.0 111140.0 104460.0 127760.0 109310.0 True False 95532.87747215813 104031.07293765491 99223.7463736714 106004.03755252977 106009.79986088786 94781.4230584988 105763.73360396996 112255.33563713198 96275.25989629085 102333.74221500073 0.9335423038810196 1.0165862274350148 0.9696092825883831 1.035865934911457 1.035922243888666 0.9261991304819607 1.0335176972397129 1.0969532942642342 0.9407968262708388 1.0 16.642922393712173 6.10570213474636 0.9806249409254152 1.0159614567651312 3.2487214202099203e-10 0.13804777359737663 0.04882339551843182 44.77671767638819 3.9299891712965054 0.015189698906085392 86.150829786842 1275563.6505239177 -6.10570213474636 -1.015961456440259 ESDTGLWLHNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESDTGLWLHNK 11 0 A0A0C4DFX9;Q9H3P2;F8W954;F8WF98;C9JHL4 A0A0C4DFX9 NELFA Negative elongation factor A 0 ; 136.96 8.835700000000001e-05 594490000.0 725540.0 816370.0 785590.0 699820.0 680410.0 847290.0 894670.0 739150.0 1001500.0 861860.0 False True 721633.7732550717 843542.3819439132 896194.2435293111 788417.1402458393 767056.1803939674 788718.8366061222 851391.3941287015 794309.1263276486 754693.7444124554 806855.3569245309 0.8943781150635276 1.0454691472325612 1.1107247858467606 0.9771480519767853 0.9506737159405312 0.9775219682651185 1.0551970521382263 0.9844504588223787 0.9353519660439529 1.0 19.621950542548323 ESDTKNEVNGTSEDIKS(ph)EGDTQSN ddPTM_BT-474_Trastuzumab_2h_R1 1 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 ESDTKNEVNGTSEDIKS(1)EGDTQSN 181.02 2.6795999999999998e-17 363980000.0 626840.0 449370.0 425970.0 411080.0 450940.0 644880.0 617560.0 616520.0 1158100.0 663930.0 True False 623465.1630884708 464327.0088000991 485942.8734023867 463122.6858510181 508364.53606921626 600300.9634842334 587686.2634917019 662527.8530251264 872701.7727449472 621557.4189809288 1.0030692966559225 0.7470379962021594 0.7818149354553787 0.7451004069910845 0.8178882924488339 0.9658013003343338 0.9455059911524181 1.0659157670603794 1.404056561943675 1.0 19.245528146893434 1.929110703808754 1.3301528566660612 1.1911377669833751 0.8172364070311866 0.5771261131032646 0.1223595979210122 0.2887776354098645 0.9476994011630109 0.08762565923032949 0.03890015645878665 84.93969629249047 -1.929110703808754 -0.37390135995218854 ESDTKNEVNGTSEDIKSEGDTQS(ph)N ddPTM_BT-474_Trastuzumab_2h_R1 2 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 ESDTKNEVNGTSEDIKSEGDT(0.383)QS(0.617)N;ESDTKNEVNGTSEDIKSEGDT(0.138)QS(0.862)N 205.89 7.2745e-25 2845600000.0 893210.0 680440.0 589900.0 644790.0 594350.0 899500.0 929860.0 852310.0 1586780.0 973960.0 True False 888401.0566049608 703088.0340653337 672952.7924972832 726420.3478881922 670036.9495115512 837319.6821952432 884879.1193898459 915913.7001424853 1195739.3307626517 911801.038950893 0.9743365259016858 0.7710980839353924 0.7380478456918347 0.7966873439012555 0.7348499517860688 0.9183140251283908 0.9704739099748964 1.0045104809228165 1.311403781836501 1.0 19.798359527518024 1.973610861250775 1.3287471435453735 1.1337539807130816 0.8009153435473587 0.6200592725076877 0.10258234650380563 0.27303202073647076 0.8944371553122312 0.07204641842755385 0.033085069629380306 94.10460178091557 -1.973610861250775 -0.33283863716572293 ESDVPLKTEEFEVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESDVPLKTEEFEVTK 15 1 Q969H8;M0QXF7;M0QYN0 Q969H8 MYDGF Myeloid-derived growth factor 0 ; 215.79 2.0919e-12 579730000.0 762100.0 617610.0 581820.0 549080.0 568530.0 781070.0 773270.0 738020.0 1142020.0 749520.0 False True 757996.9382772696 638166.7754968707 663735.1987299022 618593.47170156 640928.9255586814 727076.4693410104 735863.9759217381 793094.799989625 860584.473283986 701684.9919036432 1.080252459470245 0.9094775901726926 0.945916196567373 0.8815828738524686 0.913414043272989 1.0361864336993742 1.048709868976061 1.1302718586555351 1.2264541542341598 1.0 19.420463979875613 2.2676762497138165 1.7446781694573843 1.12752184707474 0.9421346221365068 0.4975959479811696 0.0736769551612689 0.2689088411333959 1.6441388852952459 0.03659295628287459 0.023577411933482586 185.2150399832698 -2.2676762497138165 -0.18538722493823312 ESDWDGIIACHQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESDWDGIIACHQGK 14 0 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 WDR36 WD repeat-containing protein 36 0 125.53 9.0713e-05 243600000.0 268210.0 284180.0 238780.0 215210.0 246350.0 270050.0 267590.0 252580.0 317640.0 297410.0 False True 266765.98716093256 293638.7595095621 272398.1484870336 242455.56393402163 277721.2122691527 251382.07912932208 254645.649406931 271428.8021752517 239361.8781579349 278429.03917448845 0.9581112227081788 1.054626918155408 0.9783395772749287 0.8707984075686781 0.9974577834717442 0.9028586956110697 0.9145800673734586 0.9748580930351529 0.8596871894814442 1.0 18.086950161515034 3.9930322193245527 24.82728064806638 0.93282823029776 1.0088976259153377 0.27152242350511013 0.0505514008595111 336.2290156513721 1198053.8625186542 0.011636884732277 0.023672862271543544 9840.841100256606 -3.9930322193245527 0.07606939561757775 ESDYFTPQGEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESDYFTPQGEFR 12 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 0 ; 158.94 0.00016772 217030000.0 169242.0 253503.0 272352.0 191192.0 243697.0 269570.0 225094.0 170404.0 274370.0 244406.0 False True 168330.81987655393 261940.69410920067 310696.7942739784 215396.8875966427 274730.3684447151 250935.26039952348 214205.34327741628 183120.411773979 206755.18986964074 228807.79983349633 0.7356865456468199 1.1448066643699 1.3578942435532038 0.941387871188776 1.2007036851219088 1.096707632266598 0.9361802501195052 0.8003241668650977 0.9036195008216359 1.0 17.803776707450425 2.1500313041293393 4.127245187321722 0.8772670507067502 1.0946676482061695 0.20466211214930907 0.160488691012743 0.288989567066757 9.209301762174263 0.06248632119111207 0.04513026431011231 141.26393645940175 -2.1500313041293393 0.2174005974994193 ESEDAELLWR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESEDAELLWR 10 0 E5RH53;Q96DB5-3;Q96DB5-2;Q96DB5;H0YB83;E5RGC8 E5RH53 RMDN1 Regulator of microtubule dynamics protein 1 0 ;;; 125.47 0.00094974 1439893000.0 886050.0 1042010.0 1050480.0 920770.0 1005700.0 1295850.0 1017540.0 908760.0 1209350.0 958130.0 False True 881279.6052494092 1076692.672941653 1198378.4530641562 1037339.3875913261 1133769.933749084 1206270.9396027853 968317.7028197206 976576.2857897766 911321.8969597621 896981.323103637 0.9824949333394163 1.200351272885146 1.336012715312352 1.1564782463942922 1.2639838807636894 1.3448116572026028 1.079529392506472 1.0887364771551027 1.0159875947098937 1.0 19.77471842017635 2.080232091731907 9.25550009705774 1.054563653877163 1.2185207230198887 0.410922306943032 0.09866615516264897 0.32235478283907754 34.068352480216184 0.03749248818225984 0.027673633549770826 120.29071096215992 -2.080232091731907 0.16395706914272568 ESEDDPES(ph)EPDDHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESEDDPESEPDDHEK 15 0 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 1 ESEDDPES(1)EPDDHEK 129.32 4.2903e-05 392710000.0 533960.0 431540.0 360660.0 367120.0 368020.0 482160.0 472000.0 448640.0 643980.0 437380.0 True False 531085.2186885336 445903.54802856117 411437.79308708245 413597.35435833794 414885.1655745629 448829.4140825547 449167.5567849005 482119.7949477597 485279.7578898974 409466.03394014284 1.2970189824491511 1.088987879501978 1.0048154400695122 1.0100895314281404 1.0132346304338695 1.0961334442411068 1.0969592580432723 1.1774353792144763 1.1851526565469341 1.0 18.6433842567097 1.9624139460392407 5.33877671686405 1.1403156028047816 1.0762979239037174 0.010907796347177867 0.09265184646699744 0.5310420751266925 38.890487171201116 0.04102729628182991 0.025551202972500953 91.70941983178557 -1.9624139460392407 -0.06401767890106425 ESEDKPEIEDVGS(ph)DEEEEK ddPTM_BT-474_Trastuzumab_2h_R1 8 ESEDKPEIEDVGSDEEEEK 19 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK 325.46 6.1921e-63 44812880000.0 29616840.0 15249320.0 13224170.0 10289920.0 11558380.0 19387170.0 18213410.0 18905550.0 31307120.0 17907420.0 True False 29457386.22418027 15756884.39779139 15086018.189453788 11592622.816950742 13030271.181114366 18046980.57038929 17332357.7763171 20316378.141437706 23591899.76991516 16764553.124286411 1.7571232591643646 0.9398928966955143 0.8998759512175144 0.6914960828962857 0.7772513281154939 1.0764963692497747 1.0338693580330587 1.2118651771281543 1.4072489493166467 1.0 23.99891069139522 -0.12344855703969165 8.724648498866385 0.9999998681920783 1.0653010478791896 0.002533041722888374 0.2973106337742371 0.0 0.0 0.28984480380180466 0.06831707541998018 0.7525778690925242 0.12344855703969165 0.06530117968711124 ESEDKPEIEDVGS(ph)DEEEEKK ddPTM_BT-474_Trastuzumab_2h_R1 10 ESEDKPEIEDVGSDEEEEKK 20 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK 252.8 2.2774e-36 118381700000.0 23431700.0 9695969.0 8158404.0 6005289.0 6602647.0 13508350.0 12429131.0 13490529.0 26218690.0 11970276.0 True False 23305546.330706604 10018693.466827964 9307036.369081216 6765557.971663842 7443454.95849516 12574549.559735542 11827886.449638706 14497260.777498227 19757445.161946442 11206322.737411106 2.079678309897638 0.8940215003251362 0.8305165384904251 0.6037268540444363 0.6642192209622862 1.122094183291434 1.0554654481039152 1.2936679691635755 1.7630623019617606 1.0 23.417809611504783 1.6881709733049377 3.0723653801007225 1.4184983168744474 0.9898333968149206 0.09939977125050636 0.4234760164669417 0.4175260140226704 8.984795477165477 0.25722879507548874 0.11480780815157968 48.772045838833485 -1.6881709733049377 -0.42866492005952683 ESEDKPEIEDVGS(ph)DEEEEKKDGDK ddPTM_BT-474_Trastuzumab_2h_R1 10 ESEDKPEIEDVGSDEEEEKKDGDK 24 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK 193.9 6.6479999999999996e-18 87448865000.0 46651925.0 17591255.0 10766759.0 9944713.0 11378504.0 25040245.0 26043439.0 24204085.0 60793000.0 20073500.0 True False 46400756.219316125 18176769.2885368 12282625.080853121 11203712.646145595 12827489.038722944 23309271.801546447 24783618.359971594 26010316.728553284 45811379.73446461 18792392.04421202 2.469124532425204 0.9672408518177529 0.653595617415619 0.5961834246426491 0.6825894760254194 1.2403568288011322 1.318811266903345 1.384087596052699 2.437762027669826 1.0 24.163645380287136 1.8015334765574182 1.8932286963558496 1.7106670286923529 1.039209818292893 0.1202979274734296 0.6050298966219639 0.5955965739421968 4.141121253993027 0.4116468764897707 0.17779141063858345 63.31891677110618 -1.8015334765574182 -0.6714572103994598 ESEDSETQPFDTHLEAYGPCLS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESEDSETQPFDTHLEAYGPCLSPPR 25 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR 315.47 7.873699999999996e-75 4237660000.0 1515517.0 1869350.0 1629977.0 1673320.0 1555122.0 1900460.0 1846700.0 1686354.0 2091650.0 1899420.0 True False 1507357.6248617696 1931570.1847040644 1859463.5935859373 1885162.1404306341 1753157.5687697527 1769085.6734016365 1757368.0659209238 1812198.2986121012 1576190.884174048 1778197.3894247243 0.8476885827334525 1.0862518391892133 1.0457014528558632 1.0601534743229573 0.9859184245776718 0.994875869193557 0.9882862703388969 1.019120998259016 0.8863981544163504 1.0 20.76198404924998 1.2691503136448663 24.997946599551312 0.9431989103579476 1.00837510068321 0.11427877352013116 0.06604352116031852 327.03316552908404 267252.30574132974 0.04143643939185089 0.01512691955305115 18.584475710015063 -1.2691503136448663 0.06517619032526245 ESEEQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESEEQKR 7 1 P00367 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial 0 ; 111.29 0.010603 676020000.0 618690.0 439390.0 514850.0 390650.0 499780.0 542500.0 446640.0 426170.0 771930.0 625350.0 False True 615359.0417829205 454014.83053313626 587336.4048435771 440106.2499457531 563424.0205718566 504998.251907637 425034.3168695087 457972.96944741125 581698.1948320572 585439.6276109293 1.0511058916426392 0.7755109307955231 1.003239919443766 0.751753433128101 0.9623947440508694 0.8625966335221299 0.7260087920662205 0.7822718993524816 0.99360919110628 1.0 19.159160877550793 2.4843639629203276 24.883356752570073 0.8383099605221719 0.8993755243918538 0.0 0.11871368705862242 1031.7444782342207 3544718.5679378966 0.038239038318208976 0.03325321224800301 305.04503657002937 -2.4843639629203276 0.06106556386968187 ESEIIDFFLGASLKDEVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESEIIDFFLGASLKDEVLK 19 1 P15880;E9PQD7;E9PPT0;E9PMM9;I3L404 P15880 RPS2 40S ribosomal protein S2 0 ; 299.71 6.7171e-50 1882280000.0 1781190.0 1603990.0 1539790.0 1381690.0 1353680.0 1927750.0 2068480.0 1736040.0 3057590.0 1989680.0 False True 1771600.2709488128 1657377.8375175705 1756579.047905395 1556611.8123321314 1526063.124110031 1794489.179935385 1968419.7200390499 1865592.1202324976 2304087.9141069176 1862696.9189492494 0.9510942187783161 0.8897732211059329 0.943029985198174 0.8356763768150853 0.819276130531684 0.9633822666908471 1.0567579191302034 1.0015543061535106 1.2369634000396896 1.0 20.82896152052271 2.3660752969787335 2.86816296969272 1.0685493780139526 0.8877753889272133 0.5919193889582841 0.07255983638214818 0.19191451139179616 3.206495036913834 0.027920634030257813 0.02222343099327677 232.31395420349259 -2.3660752969787335 -0.18077398908673925 ESEITDEDIDGILER ddPTM_BT-474_Trastuzumab_2h_R1 2 ESEITDEDIDGILER 15 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 ; 237.49 2.2598000000000003e-17 1035780000.0 787670.0 1116580.0 1022240.0 952000.0 1014810.0 1264630.0 1036450.0 1069290.0 1392960.0 1178420.0 False True 783429.2722383635 1153744.6903131362 1166162.5065306386 1072523.1023892404 1144040.0382498829 1177209.104718812 986312.953876506 1149085.8495446006 1049683.6727077118 1103212.226703879 0.710134689658991 1.045804843697423 1.0570608975345017 0.9721820302823058 1.0370081209741366 1.0670740191449992 0.894037366521364 1.0415818658734235 0.9514793684293211 1.0 20.073278920508525 4.7429825477610565 24.95426209557781 1.0081476882174591 0.7101345678601788 0.7477057484778886 0.051793848344742724 209.15902754862591 1180303.3918305445 0.01176437855977991 0.09430860187694204 55332.78731416167 -4.7429825477610565 -0.29801312035728034 ESEKQQDS(ph)QPEEVMDVLEMVENVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESEKQQDSQPEEVMDVLEMVENVK 24 1 Q9H307 Q9H307 PNN Pinin 1 ES(0.036)EKQQDS(0.964)QPEEVMDVLEMVENVK 342.48 9.045399999999998e-88 134940000.0 38521.0 32840.0 28975.0 28184.0 32567.0 45858.0 42205.0 40015.0 76555.0 45981.0 True False 38313.60721608544 33933.05954780078 33054.428144785204 31752.09151022937 36714.21441026783 42687.94439812058 40163.382911243054 43001.122492052855 57689.04603444379 43046.45321368535 0.8900525909973172 0.7882893250079142 0.7678780869750385 0.7376238723457645 0.8528975483303146 0.9916715829342521 0.9330242078684031 0.9989469348053491 1.3401579393329264 1.0 15.393606752088534 2.125661208032082 0.9677375028696643 1.1336402799581873 0.7969619419525805 0.6210758750591081 0.10163592904438824 0.36514045274674156 0.6381859937277757 0.07818416552127481 0.04064605061833829 133.55532485341777 -2.125661208032082 -0.33667833800560676 ESEKS(ph)LENETLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESEKSLENETLNK 13 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 ESEKS(1)LENETLNK 151.39 2.7076e-05 325430000.0 177830.0 108220.0 104540.0 114570.0 114340.0 150550.0 126700.0 142230.0 214760.0 139530.0 True False 176872.58303877054 111822.03727962852 119258.32332203086 129074.55025287328 128900.52125372374 140142.83285658012 120571.0369589976 152843.92482930602 161835.27563656398 130625.07594235685 1.3540476953814145 0.8560533762213783 0.9129818487122489 0.9881299537757375 0.986797675130967 1.072863168465627 0.9230313252579775 1.1700963519190914 1.238929619516392 1.0 16.99507235037965 1.67333377909599 7.819883484087336 1.1528527464534792 1.004083937192096 0.13312415176285242 0.13994360293337318 0.1977356124729538 21.798909750513484 0.06557585730439305 0.03419701252167584 47.133943740133 -1.67333377909599 -0.14876880926138325 ESENVVCHFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESENVVCHFYR 11 0 F8WCJ3;B8ZZX4;O14530-2;O14530 F8WCJ3 TXNDC9 Thioredoxin domain-containing protein 9 0 ; 96.64 0.0068613 402200000.0 599880.0 672170.0 644750.0 590210.0 548280.0 680210.0 701900.0 580610.0 917750.0 739470.0 False True 596650.3127329331 694542.7721146541 735525.1957325374 664930.525484405 618100.2080898347 633188.6837421075 667946.4154816148 623938.0664778413 691582.8097199501 692276.3915078813 0.8618671964724084 1.0032738088927693 1.062473319551536 0.960498629797395 0.8928517795378232 0.914647229790587 0.9648551123153684 0.9012846229217945 0.9989981143421336 1.0 19.400988623638295 4.756372105021874 23.413112332546646 0.9596356755004092 0.8618669985037201 0.2694261562184047 0.050572158378397625 2365.6624354047185 3109528.285397028 0.013043409309928748 0.36581391973711525 57065.300035341104 -4.756372105021874 -0.09776867699668912 ESEPES(ph)PMDVDNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESEPESPMDVDNSK 14 0 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 ESEPES(1)PMDVDNSK;ESEPES(1)PMDVDNSK 361.52 1.2396999999999997e-82 401170000.0 739090.0 671430.0 563350.0 513320.0 529170.0 663150.0 602930.0 550710.0 759420.0 624340.0 True False 735110.8215606179 693778.1416619947 642664.7832740195 578306.2593681151 596556.6628636785 617308.0013871877 573763.9724837297 591806.7766487174 572271.1167066466 584494.0866756331 1.2576873544463592 1.1869720455307347 1.0995231567341217 0.9894133620021516 1.020637635971054 1.0561407128995726 0.9816420483346 1.0125111444919415 0.9790879493092808 1.0 19.156828903527543 4.207493533320313 1.6315372660051632 1.0064035484631302 1.2611274817909888 0.9346532146511827 0.023123738944543577 0.09981599515263809 0.470231867442614 0.0064085811564565396 0.02946044702155778 16124.770172467994 -4.207493533320313 0.2547239333278586 ESEQES(ph)EEEILAQK ddPTM_BT-474_Trastuzumab_2h_R1 3 ESEQESEEEILAQK 14 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 ESEQES(1)EEEILAQK;ESEQES(1)EEEILAQK;ESEQES(1)EEEILAQK 254.72 3.053e-24 1312090000.0 1584020.0 1228510.0 995530.0 894890.0 992970.0 1373840.0 1265860.0 1174560.0 1527870.0 1267200.0 True False 1575491.8123211656 1269400.2127000229 1135691.9706981191 1008182.9822448601 1119418.8437057035 1278869.6744714987 1204625.5157452011 1262211.6314948292 1151346.9109090941 1186326.2110954989 1.3280426560467684 1.0700262717181392 0.9573184509253807 0.8498362194272565 0.9436012061741343 1.07800844532512 1.0154251878434044 1.0639667400834505 0.9705146022575836 1.0 20.17806934010086 4.701997649224761 2.8801930072038338 0.9902148688166309 1.3727798805132012 0.7383031814211771 0.061322156272899976 0.20533864815167382 2.5322679341274186 0.017102965310355045 0.17536766568392845 50349.78834169639 -4.701997649224761 0.3825650116965703 ESESALMEDRDES(ph)EVS(ph)DEGGSPISSEGQEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESESALMEDRDESEVSDEGGSPISSEGQEPR 31 1 O14976-2;O14976 O14976-2 GAK Cyclin-G-associated kinase 2 ESESALMEDRDES(1)EVS(1)DEGGSPISSEGQEPR 197.63 7.2448e-26 564800000.0 124490.0 160320.0 147370.0 138180.0 147900.0 165980.0 162330.0 159490.0 170150.0 170830.0 True False 123819.75967213935 165656.15428451335 168118.41503699715 155673.57383208527 166734.1883280197 154506.19327489324 154477.4777391801 171391.95367380982 128218.81239318932 159927.4831450787 0.7742243999414152 1.0358204295270368 1.0512165372132318 0.9734010113250235 1.042561197419497 0.9661015745163231 0.9659220210390317 1.0716854308169852 0.8017309462494026 1.0 17.287058358158482 4.744816343594322 24.694605443943455 0.9966674825670305 0.7742242821562458 0.4401630410563041 0.07257735748716909 511.4502393737497 2018894.2679849935 0.016161394858825416 0.14949925308385392 55566.92236749727 -4.744816343594322 -0.2224432004107847 ESESVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESESVDK 7 0 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;Q14103-2;Q14103-4;D6RBQ9 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 130.04 0.008379799999999998 434440000.0 1218800.0 1080300.0 964350.0 743230.0 868730.0 948100.0 1066900.0 1086400.0 1483100.0 1147400.0 False True 1212238.1162214088 1116257.1324448592 1100122.097719538 837322.8417949107 979357.6161338777 882560.0785873383 1015289.9710462088 1167472.6846274193 1117609.877521828 1074171.9496614372 1.128532649361667 1.0391791861598012 1.0241582812381946 0.7795054060560995 0.9117326294384772 0.821618995790672 0.9451838426484818 1.086858286511195 1.0404385237150178 1.0 20.034793522673215 1.752574364018359 24.99999977944268 1.0484814311865598 0.9433048724089401 0.15360305844590538 0.09826721897900163 8.07892045057741 14432.64832959821 0.049187294905900604 0.027277266093172697 56.56846106786258 -1.752574364018359 -0.10517655877761967 ESESVDKVMDQK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESESVDKVMDQK 12 1 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;Q14103-2;Q14103-4;D6RBQ9 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ;;; 203.88 1.0933e-07 6941440000.0 10702410.0 10631150.0 10113560.0 10758320.0 10478790.0 13310660.0 14741550.0 12770030.0 24539200.0 14493370.0 False True 10644789.413709538 10985001.401084105 11537461.339360612 12120322.208924608 11813201.793845637 12390525.404123327 14028444.908310268 13722994.483498413 18491842.968433473 13568390.718201682 0.7845285144560142 0.8096023787366309 0.8503190672334763 0.8932763258847991 0.8706413339054646 0.9131904926279668 1.0339063194496185 1.0113944069350342 1.3628619157927915 1.0 23.69374628396997 2.0810822690936064 1.092073029357237 1.1532401579044569 0.8352689864234808 0.6433459543108437 0.094723423474209 0.3098633585858619 0.6873521766659677 0.06785303796504293 0.03359590440377787 120.52642338665616 -2.0810822690936064 -0.3179711714809761 ESEVAHVDQLFDDASR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESEVAHVDQLFDDASR 16 0 E9PRF4;Q15047-3;Q15047;E9PAP1;X6RHV1;B0QZE6;E9PS59;X6R732;E9PQM8;Q15047-2 E9PRF4 SETDB1 Histone-lysine N-methyltransferase SETDB1 0 ; 192.55 5.1752e-10 160566000.0 206550.0 261430.0 247030.0 255490.0 244970.0 277300.0 270540.0 238660.0 293120.0 276510.0 False True 205437.9577498623 270131.53951222805 281809.67677674873 287835.0078040203 276165.4774490535 258130.90369398624 257452.946636837 256470.02109092422 220884.50360676867 258862.89506787882 0.7936168592103265 1.0435313235656827 1.0886445378850176 1.1119206857689838 1.0668407203614005 0.9971722815906056 0.9945533003844677 0.9907562110192457 0.8532876198763385 1.0 17.98182866123565 1.495827869161469 3.6378818681663865 0.9246878024204406 1.022260148606133 0.1182384606660849 0.08939577107499357 0.3818559521493773 10.463263708969418 0.061544598853090715 0.023396277534126316 31.320441054278408 -1.495827869161469 0.09757234618569233 ESFDGSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESFDGSVR 8 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;;; 182.39 0.00053234 5764530000.0 5865620.0 6876090.0 6181250.0 6088320.0 6157580.0 6488000.0 6349490.0 6297430.0 7093170.0 6311460.0 False True 5834040.153651649 7104956.49896582 7051516.27161186 6859100.687750479 6941711.314163945 6039499.831109205 6042340.911292717 6767376.20430159 5345153.297108432 5908657.21928724 0.9873715697380407 1.202465507014619 1.1934211124304284 1.160856085095065 1.1748373710873892 1.0221442210922076 1.0226250545672377 1.1453323408593226 0.9046307982904476 1.0 22.49439887516152 2.7359657904199386 24.852122257139 1.0378592010987213 1.1507554261153574 0.36927618622522274 0.07942492428481789 254.14699039586512 2434095.5098060765 0.024978899205110063 0.02452356731498551 544.4597638022548 -2.7359657904199386 0.1128962250166361 ESFESQFLADTER ddPTM_BT-474_Trastuzumab_2h_R1 1 ESFESQFLADTER 13 0 A0A590UJ56;A0A590UJR3;A0A590UJ21;A0A0C4DGX4;Q13616;A0A590UJC4;A0A590UJ50 A0A590UJ56 CUL1 Cullin-1 0 184.65 2.1698e-05 38646000.0 46526.0 56748.0 47629.0 46542.0 48297.0 55117.0 51199.0 42271.0 52616.0 51217.0 False True 46275.50918552457 58636.82287510958 54334.74920131054 52434.21242794121 54447.33667125328 51306.891521462145 48722.308770826574 45425.476667788695 39649.4918182783 47948.28721092024 0.9651128721650208 1.2229179869798357 1.1331947888419207 1.0935575695809066 1.135542890859569 1.0700463875960302 1.0161428406504174 0.9473847620034074 0.8269219637369677 1.0 15.549191660351864 2.008006662923054 1.614237942495096 0.9110859256730918 1.1159048484154483 0.5568659172070197 0.07193976983115694 0.25487698405079234 1.2408533387942102 0.04370668122658821 0.021463441292924716 101.86070153493893 -2.008006662923054 0.20481892274235658 ESFQIFLDELHEHGQLHSMSSWMELYPTISSDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESFQIFLDELHEHGQLHSMSSWMELYPTISSDIR 34 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ; 56.728 0.01455 459764000.0 110267.0 168333.0 136807.0 181627.0 201157.0 157746.0 168873.0 14792.7 176139.0 76073.7 False True 109673.33472381532 173935.8621455525 156068.23645223895 204620.95957736432 226773.15159904945 146841.3903141422 160703.96783249255 15896.606389808572 132731.90359167778 71218.61133602864 1.5399532884226976 2.4422810116989804 2.191396792558435 2.873138857087614 3.1841838438701435 2.061840122398692 2.256488364737243 0.22320859802789597 1.8637249603957147 1.0 16.11996668497583 1.855616639311019 7.23912839158484 0.9818680580361968 2.4098836731033053 0.5468788387951957 0.5567377347032777 0.1782363375077793 9.898288699041922 0.23854527864013303 0.14714739669130864 71.71609590272118 -1.855616639311019 1.4280156150671086 ESGADGASTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESGADGASTSPR 12 0 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 ESGADGAST(0.002)S(0.998)PR;ESGADGAST(0.002)S(0.997)PR;ESGADGASTS(1)PR;ESGADGAST(0.002)S(0.998)PR 175.0 3.0267e-05 452325000.0 784363.0 920975.0 795124.0 792371.0 801187.0 869643.0 885697.0 766337.0 989858.0 927214.0 True False 780140.0767589225 951629.096133855 907070.5478582986 892685.0873563706 903213.4154426034 809526.6263294246 842852.4524188905 823524.9583204375 745920.7593176466 868038.4086921576 0.8987391213878793 1.0962983741325922 1.044965912539457 1.0283935346839632 1.040522408223206 0.9325930952169609 0.9709852052385403 0.9487194922183375 0.859317688996618 1.0 19.727399354438084 2.737277767474783 24.976806061096003 0.9423957190671773 1.0275786613103146 0.3214501103266094 0.057416200452600506 129.24370024101916 2516321.054175601 0.017347478688422145 0.017176164559950836 546.1070303255026 -2.737277767474783 0.08518294224313727 ESGCSWHGGPDGLYEYLRPSGTPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESGCSWHGGPDGLYEYLRPSGTPAR 25 1 Q8IZ83;F5H4B6;Q8IZ83-3;M0QY06 Q8IZ83 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 0 166.49 8.3527e-12 265960000.0 50318.0 53530.0 64656.0 80008.0 63680.0 60411.0 67189.0 62468.0 59805.0 69188.0 False True 50047.09347885534 55311.713690431665 73759.0027999735 90137.004596595 71789.27053906891 56234.92976219772 63938.81138309473 67129.67936607664 45066.85909594295 64772.36260517304 0.7726612318269572 0.853940036549079 1.1387418928900201 1.3915966775217832 1.1083318201108117 0.8681932772003984 0.9871310665760441 1.0363938671694422 0.6957729698799606 1.0 15.983090747632911 2.74516962555164 24.758937258718984 0.9352308221242035 1.0655607563180511 0.11888841105507242 0.1797260341296443 1187.8396910752147 4449935.582666881 0.06051946551897945 0.0628808905664537 556.1214232429833 -2.74516962555164 0.13032993419384764 ESGGSGFRS(ph)PHLWK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESGGSGFRSPHLWK 14 1 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 ES(0.228)GGS(0.2)GFRS(0.571)PHLWK;ES(0.121)GGS(0.106)GFRS(0.773)PHLWK;ES(0.042)GGS(0.037)GFRS(0.922)PHLWK;ES(0.235)GGS(0.207)GFRS(0.558)PHLWK 94.61 0.0024742 1009990000.0 1996990.0 2263290.0 2108950.0 2277400.0 2167090.0 2290180.0 2434130.0 2184510.0 3016050.0 2575900.0 True False 1986238.4277264455 2338622.2394623007 2405871.8286779895 2565718.606492916 2443056.0661512394 2131865.2471038383 2316381.8326204033 2347529.228917014 2272784.8904994326 2411503.8566610585 0.8236513585661726 0.9697775240966569 0.9976645162861705 1.0639496177482302 1.0130840385774327 0.8840397419291691 0.9605548944995841 0.9734710655480256 0.9424761582783887 1.0 21.20150168669387 4.736880730974523 5.051477809722245 0.9783692693075011 0.8164288734431723 0.5205578423995489 0.04460869995378264 0.14011512399021944 11.483773108351249 0.011453510026802487 0.07926624815540115 54560.80017820813 -4.736880730974523 -0.16194039586432885 ESGHSNWLGDPEEPLTGFSWR ddPTM_BT-474_Trastuzumab_2h_R1 3 ESGHSNWLGDPEEPLTGFSWR 21 0 Q6DD88;F5H6I7;F5GWF8 Q6DD88 ATL3 Atlastin-3 0 ;; 242.16 4.9112e-30 737694000.0 151104.0 229140.0 271876.0 223554.0 308836.0 323120.0 247525.0 204949.0 211096.0 271175.0 False True 150290.4728532325 236766.78638194498 310153.777611445 251855.91347849174 348164.43398561334 300783.47494266444 235551.27011267512 220243.3350899345 159074.21934147927 253868.37933540202 0.5920015452364549 0.9326359864185252 1.2217109449526231 0.9920727982658625 1.3714367850658182 1.184800863069598 0.9278480082053584 0.8675493012028753 0.6266011535501866 1.0 17.953721185227938 1.8690135817256432 2.8016892966625426 0.8099179813335182 1.0623813798593364 0.16687816154259194 0.21337460712242964 0.44520913994471 6.23601214226277 0.12104977173822777 0.0619420942090111 73.96284051541087 -1.8690135817256432 0.25246339852581823 ESGLQAAHPNSIFLIDHAWTCR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESGLQAAHPNSIFLIDHAWTCR 22 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 ;;; 279.73 7.7197e-46 2486120000.0 1128280.0 1430291.0 1464851.0 1515227.0 1500722.0 1519340.0 1426786.0 1144372.0 1547855.0 1500593.0 False True 1122205.4658436938 1477897.3713058317 1671089.2880868576 1707054.5828402776 1691830.0512238157 1414311.6019416568 1357766.910328181 1229770.8496432714 1166406.8754443733 1404823.8700176976 0.7988228914629395 1.0520161301695519 1.189536513261129 1.2151377971807757 1.2043004730568128 1.0067536807470674 0.9665033028738871 0.8753914820850668 0.8302869137820668 1.0 20.421957833022773 2.2689682531749478 2.359886982914811 0.8958248502693119 1.1010697413225703 0.31267957146576497 0.12033974414464398 0.3405235801586346 3.8846445153694487 0.055463993176294794 0.039350779853858486 185.7668654984082 -2.2689682531749478 0.20524489105325838 ESGPPHMK ddPTM_BT-474_Trastuzumab_2h_R1 5 ESGPPHMK 8 0 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5;Q5JW28;E7EVI1;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJN7 O95793-2;E7EPX0 STAU1;STAU2 Double-stranded RNA-binding protein Staufen homolog 1;Double-stranded RNA-binding protein Staufen homolog 2 0 ;;;; 109.86 0.0035366 1333210000.0 2524640.0 2626472.0 2421057.0 2506968.0 2470425.0 2748802.0 2817523.0 2600895.0 3356300.0 2882232.0 False True 2511047.6187538747 2713892.532784147 2761920.781395314 2824349.8917547767 2785018.9803938335 2558783.7877239026 2681228.6485069124 2794986.9919772 2529184.837115845 2698285.4861570396 0.9306085777936591 1.0057840605477724 1.0235836035752113 1.0467201881507657 1.0321439279430442 0.9482998744392245 0.9936786386252924 1.0358381299222288 0.9373303344257944 1.0 21.36361156685934 ESGS(ph)PYSVLVDTK ddPTM_BT-474_Trastuzumab_2h_R1 6 ESGSPYSVLVDTK 13 0 Q9Y2D9;D6RF85 Q9Y2D9 ZNF652 Zinc finger protein 652 1 ESGS(1)PYSVLVDTK;ESGS(1)PYSVLVDTK;ESGS(1)PYSVLVDTK;ES(0.001)GS(0.999)PYSVLVDTK;ESGS(1)PYSVLVDTK;ES(0.001)GS(0.951)PYS(0.048)VLVDTK 327.79 2.5518999999999996e-62 2541300000.0 2660170.0 2729820.0 2618040.0 2314080.0 2411410.0 3293590.0 3085480.0 3039000.0 4383280.0 3170760.0 True False 2645847.940292673 2820680.4084889605 2986637.2755883834 2607042.290732031 2718488.769953141 3065911.875576906 2936223.5447217724 3265785.6117293136 3303079.376942807 2968399.382175792 0.8913382599996724 0.950236152664014 1.0061440160384427 0.8782653393564274 0.915809640130207 1.0328501932680092 0.9891605430026619 1.1001840356588208 1.1127476298427537 1.0 21.50125378120246 2.338127006040928 1.5265934568059767 1.0740586618164991 0.9322643581388403 0.5832333200258688 0.049442339485876306 0.2684440836232124 1.2570098341539695 0.0259299354599726 0.017202256065500337 217.83467197566273 -2.338127006040928 -0.14179430367765877 ESGSDAWK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESGSDAWK 8 0 P49419;P49419-2;A0A1B0GW77;A0A1B0GW82;A0A1B0GTG2;A0A1B0GUA1;A0A1B0GV49;A0A1B0GTJ4;A0A1B0GTY9;P49419-4 P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase 0 105.57 0.01015 259900000.0 307740.0 317700.0 281290.0 309750.0 307090.0 361390.0 333390.0 296350.0 382760.0 321320.0 False True 306083.16203312797 328274.4524462942 320893.1869834899 348964.3182406167 346196.0912349662 336407.9599205543 317262.6520265209 318465.1418348087 288433.9267212289 300813.08250410785 1.0175194492378774 1.0912904775071122 1.0667527632516043 1.160070284628832 1.1508678025339492 1.1183288875608008 1.054683690567841 1.0586811556989373 0.9588476814910141 1.0 18.198507786310646 1.5318781380213273 1.7982687330162512 0.9805793445237984 1.1013308087515228 0.5303418696073131 0.04211813107153135 0.26268210103078904 1.6853918891267936 0.03691720902816785 0.012456091116316575 34.031268538805826 -1.5318781380213273 0.12075146422772443 ESGVVAVS(ph)PEKSESPQKEDGLSSQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 ESGVVAVS(0.999)PEKSESPQKEDGLSSQLK 117.22 0.00043484 217910000.0 134010.0 87172.0 81171.0 78469.0 71903.0 125280.0 134320.0 121500.0 254620.0 130960.0 True False 133288.50504991066 90073.46732341326 92599.17124902009 88403.16735439216 81059.42084752934 116619.68847739873 127822.42844777097 130566.94696449877 191872.3127331994 122602.02067950302 1.087164015007089 0.7346817517704423 0.7552825861743818 0.7210579961441995 0.6611589303199886 0.9512052724013182 1.0425801119698894 1.06496570155085 1.5650012264869397 1.0 16.903623231608037 2.0011395426477305 1.441508450365933 1.2468513813857618 0.7886554286356461 0.5131721639193081 0.17661817980259212 0.3168389040381925 1.2269129576019333 0.11728004763792049 0.055779297416876095 100.26273393359452 -2.0011395426477305 -0.4581959527501157 ESGYCTGHEPDSLEFSTVGGWVSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESGYCTGHEPDSLEFSTVGGWVSTR 25 0 A0A1B0GWA2;A0A2R8YEL0;O00116 A0A1B0GWA2 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal 0 167.99 1.1864e-11 121370000.0 48833.0 68574.0 75759.0 71933.0 75521.0 78103.0 79952.0 68843.0 88240.0 81628.0 False True 48570.08855385635 70856.44413614167 86425.20869096732 81039.71042454336 85138.15170196319 72703.92344468593 76084.41631369993 73980.41423767079 66494.43435542182 76418.43115475329 0.6355808123762464 0.9272166814397411 1.1309471731492307 1.0604733596327256 1.1141049405941321 0.9513925154712325 0.9956291324487289 0.9680964803877572 0.870136083018577 1.0 16.221633019494412 4.694292561990483 3.4829993593151225 1.0111840018673344 0.6062340281289162 0.7003306509674133 0.0734821759842085 0.14428137093013665 3.0299686036479367 0.01878438720843769 0.142749737466956 49464.37910115183 -4.694292561990483 -0.4049499737384181 ESGYSDDEIMELWSTR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESGYSDDEIMELWSTR 16 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 0 ;;; 213.73 2.6839e-12 206727000.0 146287.0 168994.0 153958.0 169151.0 150012.0 174596.0 176289.0 160520.0 187200.0 176220.0 False True 145499.4070460135 174618.86313096958 175633.9481730747 190565.4992565574 169115.13900921473 162526.58947477542 167761.22758062134 172498.8175040441 141067.06835148434 164973.48873046774 0.8819562959217598 1.0584662085691863 1.0646192277598245 1.1551280191928393 1.0251049445011955 0.9851679244069934 1.0168981020623755 1.0456153823955991 0.8550893203329082 1.0 17.331874676179893 1.26109225099746 24.99824346888462 0.9275446189865217 1.0337851721013582 0.23660654146928672 0.07259453421790693 270.1899651339866 299769.7667474822 0.047819448298442334 0.017436473035577774 18.24283167682921 -1.26109225099746 0.10624055311483649 ESHPHGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESHPHGVK 8 0 E9PM92;O00193;E9PQA1;E9PRZ9 E9PM92 C11orf58;SMAP Small acidic protein 0 ; 93.374 0.011114 182038000.0 404260.0 421420.0 367670.0 364170.0 363240.0 353480.0 398530.0 113634.0 535920.0 326460.0 False True 402083.5090775088 435446.70994623 419434.740155071 410273.88466080884 409496.4609078425 329044.7596024173 379251.58136755583 122113.9461017602 403849.69696008216 305625.04330353235 1.315610477241482 1.4247743091974465 1.3723834134184751 1.3424092483590888 1.3398655309183873 1.076628917727876 1.240904793887918 0.3995547772584932 1.3213894142797642 1.0 18.221403238914892 2.327531204644871 1.7237656083630613 0.8616135686871136 1.360792357261841 0.3483169888683272 0.2343886908281493 0.3194613222114542 1.9228109398848934 0.11260946060283995 0.07674676158078379 212.58430844255238 -2.327531204644871 0.4991787885747274 ESHT(ph)PVS(ph)IQEEIVGDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESHTPVSIQEEIVGDFK 17 0 Q12830-4;Q12830;E7ETD6;E9PE19;A0A2R8Y7Q1;A0A0A0MR81;F5H176 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 2 ES(0.451)HT(0.553)PVS(0.996)IQEEIVGDFK 114.63 0.00062843 15319000.0 22398.0 18554.0 18454.0 18515.0 20735.0 23241.0 19490.0 17787.0 32954.0 25525.0 True False 22277.41165665175 19171.558673870146 21052.16279495654 20858.997101614274 23375.479344026273 21634.404373429283 18547.19424096974 19114.35626055588 24832.928260976554 23895.97264694807 0.9322663691405323 0.802292459784795 0.8809920862394889 0.8729084774993802 0.9782183671444622 0.9053577643842997 0.7761640220716665 0.7998986499926847 1.0392097709464088 1.0 14.54447987089905 1.2283388862169957 24.999858925576852 1.0196049993346432 0.8640049287454147 0.5012321819713672 0.06015398839578592 197.5751284418572 483204.2554389438 0.05973682359418869 0.015613400484674196 16.917605217431362 -1.2283388862169957 -0.15560007058922853 ESHT(ph)PVSIQEEIVGDFK ddPTM_BT-474_Trastuzumab_2h_R1 3 ESHTPVSIQEEIVGDFK 17 0 Q12830-4;Q12830;E7ETD6;E9PE19;A0A2R8Y7Q1;A0A0A0MR81;F5H176 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 1 ES(0.159)HT(0.841)PVSIQEEIVGDFK;ES(0.14)HT(0.84)PVS(0.02)IQEEIVGDFK;ES(0.093)HT(0.869)PVS(0.039)IQEEIVGDFK 193.87 3.898e-10 786392000.0 652113.0 649537.0 642157.0 601981.0 591764.0 719026.0 697481.0 615277.0 941480.0 709650.0 True False 648602.0960645654 671156.446391592 732567.1238712966 678191.7328774977 667121.6377399735 669321.425025143 663741.1793938326 661192.0940533007 709464.8691856591 664359.5294380685 0.9762817681160814 1.0102307811544038 1.102666690866796 1.0208203582947455 1.0041575505122071 1.0074686903208439 0.9990692538951629 0.9952323474799151 1.0678929672097002 1.0 19.34160466625407 3.479833862632879 24.96502942295467 1.0100247370979927 1.033437958241991 0.041735793399345855 0.035252010758906 295.0510540919598 2715444.100963754 0.009873083464728602 0.013618664343653865 3018.7966726310974 -3.479833862632879 0.023413221143998353 ESHTAVVYTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESHTAVVYTEK 11 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 ; 180.19 6.7724e-06 1003670000.0 1677670.0 1697030.0 1407880.0 1372680.0 1357880.0 1678590.0 1603970.0 1486220.0 2110450.0 1668570.0 False True 1668637.6111266597 1753514.6176737014 1606097.2664876669 1546461.1472559494 1530797.9692146792 1562553.0242758326 1526379.8433395692 1597129.2832722422 1590357.8760811414 1562080.4340653527 1.068214910536962 1.1225507851155503 1.02817833925988 0.9900009714808644 0.979973845028415 1.0003025389731373 0.9771454849908902 1.0224372884024122 1.0181024237927339 1.0 20.575037311433746 4.078001856747695 4.6830427556992005 0.999229946796752 1.0944397989243282 0.8118718381396436 0.01842211673498169 0.07804704659964536 3.146649968816635 0.004676467839340184 0.010590525066417984 11967.456477663884 -4.078001856747695 0.09520985212757616 ESIESEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESIESEIR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 138.54 0.0016302 3570800000.0 3890700.0 4507300.0 3868800.0 4050500.0 4034700.0 4518500.0 4423800.0 3939500.0 4823400.0 4305700.0 False True 3869752.9034974054 4657322.755779616 4413493.411787575 4563292.88469288 4548495.129459503 4206146.730404897 4209803.893442889 4233485.494375663 3634737.700248657 4030906.539704775 0.9600204979649137 1.1554033093808023 1.094913357160303 1.1320760825744913 1.12840500881289 1.0434741388752111 1.044381419409247 1.0502564256143048 0.9017171855626467 1.0 21.942672902682464 1.6165571000635088 1.4234493490855937 0.9578625723006927 1.0927240060911076 0.4011060445192137 0.05927044138921873 0.3646829798086184 1.432458562844473 0.04797182431350558 0.017177738569988655 41.35776870389561 -1.6165571000635088 0.13486143379041493 ESIESEIRR ddPTM_BT-474_Trastuzumab_2h_R1 10 ESIESEIRR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;;; 204.86 2.5468e-05 43827430000.0 11345255.0 15058437.0 13581485.0 14043194.0 13838429.0 13132286.0 14269117.0 12510244.0 16983947.0 14420718.0 False True 11284173.407656338 15559647.972527616 15493640.035616152 15821060.92051886 15600670.906355172 12224481.978896111 13578865.297389612 13443821.933011837 12798480.835080057 13500375.431042166 0.8358414523576884 1.1525344648379519 1.1476451240008305 1.1718978484213567 1.1555731161730272 0.90549200215482 1.0058139024909611 0.9958109684934915 0.9480092535539268 1.0 23.686496191855905 2.743541542796827 24.973776807591207 0.9757570361020378 1.1034751922066104 0.2852962277245831 0.09538442627311468 528.2396406214657 2648532.275908043 0.029417151320370413 0.03033957730919119 554.0405386085645 -2.743541542796827 0.1277181561045726 ESILQRPLSLPSLHVFGDTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESILQRPLSLPSLHVFGDTDK 21 1 Q8WZ82 Q8WZ82 OVCA2 Ovarian cancer-associated gene 2 protein 0 ; 102.8 0.00027221 271270000.0 244180.0 310780.0 304150.0 302050.0 296530.0 357890.0 338330.0 321450.0 415730.0 341940.0 False True 242865.36201094856 321124.12442952243 346971.6762808082 340289.4990301155 334291.33782899036 333149.906682441 321963.68535388896 345438.2312900257 313278.9119965946 320117.0964504377 0.758676636468088 1.0031458112992122 1.0838898644531731 1.0630156989531516 1.0442783017080977 1.0407126341470523 1.00576847948431 1.0790996017406036 0.9786384903222379 1.0 18.288240203196633 4.728513003474135 3.679265070553454 1.0415609229377218 0.7307335604458127 0.8647820658222779 0.03274406886511167 0.07767058717406439 1.9731538810438418 0.007465596653548323 0.06515018746149506 53519.61781643266 -4.728513003474135 -0.3108273624919091 ESIPSLPQS(ph)PMR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESIPSLPQSPMR 12 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37;H0Y765 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 ESIPSLPQS(1)PMR;ESIPSLPQS(1)PMR;ESIPSLPQS(1)PMR;ESIPSLPQS(1)PMR;ESIPS(0.037)LPQS(0.963)PMR;ESIPS(0.046)LPQS(0.954)PMR 249.33 7.038e-17 1971930000.0 2307400.0 2704310.0 2547700.0 2433070.0 2345610.0 2577320.0 2629460.0 2348340.0 2578530.0 2607270.0 True False 2294977.214776238 2794321.3235600847 2906394.014994627 2741096.412531716 2644309.5299802986 2399155.9347586944 2502262.974287339 2523585.055428899 1943085.8320317997 2440871.7964038495 0.9402284946540171 1.1448046258213866 1.1907196515919574 1.1229989287311972 1.0833463412032436 0.9829094417385561 1.0251513323944081 1.0338867691236022 0.7960622245275476 1.0 21.21896509076456 2.169961155364918 0.927280131945632 0.9345443930722517 1.1066060968381135 0.3654582237823284 0.08594482975443318 0.6361701760215623 1.0280929942617887 0.0670042917978846 0.03636334911551879 147.89760980780483 -2.169961155364918 0.17206170376586183 ESIWLPFMETELHCDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESIWLPFMETELHCDEK 17 0 O75884;O75884-2 O75884 RBBP9 Putative hydrolase RBBP9 0 ; 219.58 4.2809e-15 95953000.0 185603.0 180910.0 170056.0 155110.0 148422.0 203000.0 208240.0 200470.0 262220.0 200042.0 False True 184603.73407043202 186931.4799875954 193998.40664675026 174746.91009621348 167322.66193388312 188967.08781059962 198166.63564594876 215430.08936603362 197599.39456798186 187275.14829542724 0.9857353511701347 0.9981649016916558 1.0359004299957464 0.9331025055206449 0.8934589744386746 1.009034511682796 1.0581576757495883 1.1503399747743992 1.0551287576943635 1.0 17.514799938834948 2.2674347807338555 3.312970859684333 1.0880376055850254 0.9714375740559371 0.42150898914211554 0.05102762663516259 0.19729332811158456 4.509337733992994 0.020571433293251194 0.01569160487441237 185.1120885120997 -2.2674347807338555 -0.11660003152908827 ESKDPADETEAD ddPTM_BT-474_Trastuzumab_2h_R1 2 ESKDPADETEAD 12 1 P16949 P16949 STMN1 Stathmin 0 ; 133.42 0.0013337 2016660000.0 2703190.0 2143290.0 2094580.0 1888370.0 1794780.0 2822990.0 2665180.0 2419090.0 3604830.0 2776460.0 False True 2688636.325392646 2214628.1120038326 2389478.6575842677 2127437.4483810635 2023334.5945054991 2627843.34590367 2536255.0614236873 2599614.77969012 2716467.948747226 2599263.945753004 1.0343837261258786 0.8520212484085594 0.9192905020240406 0.8184768814483545 0.7784259839449823 1.010995189694899 0.9757589511321971 1.0001349743405972 1.0450912279169355 1.0 21.309671710981224 2.706082198436026 24.746689587827763 1.0033287422198622 0.8776435286741056 0.47959155823709676 0.06548857429527961 514.1475850504756 391750.355436055 0.021289268103412327 0.020073152449639402 508.2556304383553 -2.706082198436026 -0.12568521354575668 ESKEETPGTEWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESKEETPGTEWEK 13 1 P09497-2;P09497;D6RJD1 P09497-2 CLTB Clathrin light chain B 0 100.45 0.0013219000000000002 0.0 198250.0 166590.0 163950.0 158700.0 167810.0 225000.0 233150.0 185630.0 312380.0 220760.0 False True 197182.64402764553 172134.84744421826 187032.73492105387 178791.4037281223 189179.60881220392 209446.27959302915 221871.6437805076 199482.65321004024 235398.13467754648 206670.90779785538 0.9540899884201877 0.8328934598409138 0.9049785328469666 0.8651019421804543 0.9153664191441996 1.013428942780318 1.0735504389302826 0.9652188367273928 1.1389998582083414 1.0 17.656975795325582 2.7591855366189355 3.1109598332940767 1.03554859453116 0.8866676910586676 0.662504596137206 0.05170979855339494 0.15241730658546615 3.019672181832894 0.016229543723558282 0.016442204484687906 574.3617851121385 -2.7591855366189355 -0.1488809034724924 ESKGS(ph)PVFLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESKGSPVFLPR 11 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 ES(0.004)KGS(0.996)PVFLPR;ES(0.381)KGS(0.619)PVFLPR 129.38 0.00014912 7638400000.0 3467300.0 3713300.0 3449100.0 3385400.0 3345300.0 3993500.0 4180900.0 3855600.0 5665200.0 4124400.0 True False 3448632.442053249 3836894.9457627493 3934703.2998853726 3813991.2928871135 3771304.125853444 3717438.744687827 3978653.8944110028 4143324.450340094 4269087.369790748 3861177.2609235076 0.8931556903524324 0.9937111628086843 1.019042388886409 0.9877793831135563 0.9767239033598348 0.9627733961632982 1.0304250816652218 1.0730728403153145 1.1056439736645702 1.0 21.8806093571147 2.048224508421667 3.566176042729309 1.0655429471186135 0.9763475522510451 0.505107089172733 0.03925782272693517 0.18570234836382477 4.838299077945772 0.01683948816794582 0.011003933747853079 111.74407592110128 -2.048224508421667 -0.08919539486756844 ESLATSEMSAFHQPGPCEDPSCLTHGDYYDNLSLAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESLATSEMSAFHQPGPCEDPSCLTHGDYYDNLSLASPK 38 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 ESLATSEMSAFHQPGPCEDPSCLTHGDY(0.002)Y(0.002)DNLS(0.065)LAS(0.931)PK 81.005 0.0022138 334050000.0 24653.0 28516.0 24296.0 26001.0 22276.0 35730.0 29973.0 20962.0 40465.0 32385.0 True False 24520.270987205786 29465.13782171397 27716.665615382248 29292.723934057423 25112.716559803677 33260.06919937303 28523.09148202081 22526.290882879217 30492.94295322015 30318.161573806585 0.808765100334781 0.9718642652518356 0.9141934793080626 0.9661774465693497 0.8283060468118832 1.0970344992193757 0.9407922512908359 0.7429965972059742 1.0057649069185173 1.0 14.887894653877547 6.800503572800686 17.470451258180336 0.9177352469959351 0.3888944168071634 0.0 0.10143538326559898 0.0 0.0 0.022226280571788284 0.0 6316893.75970979 -6.800503572800686 -0.5288408301887717 ESLCDS(ph)PHQNLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESLCDSPHQNLSR 13 0 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9JDJ7;C9J5L1;U3KPT1 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 ESLCDS(0.992)PHQNLS(0.008)R 112.63 0.00033784 0.0 82319.0 97842.0 110560.0 105650.0 95140.0 100240.0 98768.0 74817.0 110980.0 105210.0 True False 81875.80365050067 101098.6118232621 126125.88699525277 119025.27916746151 107255.5150610398 93310.64473957877 93990.21450959967 80400.224453028 83630.46605581044 98495.40772518716 0.8312651883115507 1.0264297002083402 1.2805255585839863 1.2084348084486833 1.0889392463889715 0.9473603581592916 0.954259865311107 0.8162839903902253 0.8490798503941268 1.0 16.587768841107852 2.547024352546964 2.17663355767984 0.881785110021267 1.102057600361791 0.3364427508874721 0.12099083934508477 0.34160020728161 3.2334384847573885 0.0500666180685178 0.043566179221653276 352.39063037431424 -2.547024352546964 0.22027249034052399 ESLCDS(ph)PHQNLSRPLLENK ddPTM_BT-474_Trastuzumab_2h_R1 5 ESLCDSPHQNLSRPLLENK 19 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9JDJ7;C9J5L1;U3KPT1 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK 249.12 3.3983e-25 2177900000.0 1326955.0 1267064.0 1068771.0 1133226.0 1080436.0 1483353.0 1451696.0 1309810.0 2210730.0 1781093.0 True False 1319810.8217185594 1309237.4592836373 1219244.666875936 1276692.295407719 1218023.1203541057 1380812.2985473715 1381471.9184627405 1407554.673280413 1665925.2137642999 1667422.1198695644 0.7915277157423117 0.7851865725435222 0.731215360733797 0.7656683212932244 0.7304827648858266 0.8281120192020643 0.8285076118402503 0.8441501743964631 0.9991022632557006 1.0 20.669187948484048 1.4254964405378567 1.143187840986484 1.0148938636291462 0.767269097480827 0.8819094339156774 0.03168028407099729 0.13775266318508209 0.3519976858607042 0.02905784224016921 0.009974712108534104 26.637682645274687 -1.4254964405378567 -0.2476247661483193 ESLCDSPHQNLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESLCDSPHQNLSR 13 0 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9JDJ7;C9J5L1;U3KPT1 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 232.5 6.428399999999999e-13 619080000.0 195740.0 234120.0 215540.0 215390.0 210730.0 224770.0 226570.0 202950.0 247420.0 236100.0 False True 194686.15758875824 241912.54267147163 245886.15849273506 242658.35191556558 237565.21640543334 209232.17895166753 215609.94351854836 218095.15955921833 186446.65625814223 221031.89586462057 0.8808057173250743 1.0944689304915531 1.1124464979630697 1.097843145969263 1.0748006095506653 0.946615320531928 0.9754698192997762 0.9867135180019405 0.8435282859462899 1.0 17.75389504624989 2.7364734595192357 24.713832245718 0.9548316271986554 1.0603251841316805 0.32103388929087795 0.07325661475461147 191.4862229750314 2267357.1540231826 0.023067739411462628 0.022735594291006137 545.096582883798 -2.7364734595192357 0.10549355693302509 ESLIDGIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESLIDGIKR 9 1 P23526;P23526-2 P23526 AHCY Adenosylhomocysteinase 0 ; 91.867 0.016776 476000000.0 272870.0 299070.0 281780.0 259400.0 265940.0 317540.0 300310.0 273890.0 417350.0 343220.0 False True 271400.8982387074 309024.36415836716 321452.1747243339 292240.01340311853 299805.88265012536 295589.20720875764 285782.85800439323 294329.0625852392 314499.6847034826 321315.4057545742 0.8446557288510707 0.9617477364107616 1.0004256533216591 0.9095113653726771 0.9330579153093015 0.9199347492056865 0.8894153622459008 0.9160129185030498 0.9787880664013429 1.0 18.293630628208785 1.127093198637317 4.3778433638553365 0.9982947420075442 0.9237168934846485 0.32919127999103204 0.03895174781123038 0.24595671939145602 7.550525496033727 0.03723603151065926 0.009568526447529856 13.39964209936099 -1.127093198637317 -0.07457784852289573 ESLKEEDES(ph)DDDNM ddPTM_BT-474_Trastuzumab_2h_R1 24 ESLKEEDESDDDNM 14 1 P25788-2;P25788;G3V4X5;H0YJ03 P25788-2 PSMA3 Proteasome subunit alpha type-3 1 ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM 227.05 7.6954e-12 71811010000.0 52474300.0 40450970.0 35274180.0 33660030.0 34531570.0 49236660.0 49101610.0 47098570.0 67767910.0 46159850.0 True False 52191784.19924279 41797356.08332226 40240477.935331084 37921386.34675938 38928960.75484918 45833045.58483074 46726377.537934385 50613304.45509244 51067416.62397028 43213888.85356422 1.2077548580758681 0.9672204282506935 0.9311931650421716 0.8775277428805549 0.9008437284310361 1.0606091421242339 1.0812814763390697 1.171227718630047 1.1817361959026353 1.0 25.36499173030004 2.384998129801068 2.622750571456348 1.1298348577158503 0.9691191561635603 0.2759722476395058 0.0977739018052419 0.3156059724766959 4.4374672028655775 0.03917350764306936 0.03117090799861838 242.6599645412835 -2.384998129801068 -0.1607157015522901 ESLLVSVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESLLVSVQR 9 0 J3QRZ1;A6NIZ0;Q9GZM8-3;Q9GZM8;Q9GZM8-2 J3QRZ1 NDEL1 Nuclear distribution protein nudE-like 1 0 67.494 0.060742 156570000.0 94654.0 190800.0 178530.0 224240.0 217060.0 141580.0 148780.0 98023.0 73953.0 140640.0 False True 94144.39338104804 197150.66265896437 203665.47218942177 252628.7610081545 244701.3043845839 131792.90784347142 141582.94300520647 105337.97401070828 55728.274069430154 131664.23479203833 0.7150339158523018 1.4973744614120976 1.546854941367398 1.9187348896014003 1.8585252462150097 1.0009772817320992 1.0753333525147097 0.8000500225219704 0.4232605320454117 1.0 17.00650398027729 2.395545985368435 2.2047157641772785 0.7860307340233331 1.5245160187912759 0.4576410653965708 0.3493226881985699 0.2816649934961404 2.802051551681986 0.15074881884632138 0.1170780553629485 248.625680814985 -2.395545985368435 0.7384852847679427 ESLQQMAEVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 ESLQQMAEVTR 11 0 K7ELL7;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;; 192.44 3.2337e-06 290880000.0 291029.0 368910.0 321420.0 323218.0 321244.0 332830.0 364320.0 338210.0 382660.0 335494.0 False True 289462.1322003619 381188.94633919606 366673.14216727705 364137.36565971165 362152.5192376355 309822.245497546 346696.4497624474 363448.9475955815 288358.57038129796 314082.4856891361 0.9216118229746112 1.2136587161261796 1.1674421811924678 1.159368580711366 1.1530490738540475 0.9864359192705616 1.1038388498542102 1.1571767422756136 0.918098217888856 1.0 18.260783970072584 2.768100122746591 24.745969207629727 1.0580749413628123 1.1325478165592204 0.15117797677001454 0.09666647969612943 1353.6710880280843 1134001.0988025265 0.029279911007930377 0.03105208476526508 586.2733090544731 -2.768100122746591 0.0744728751964081 ESLWPFLIDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESLWPFLIDKR 11 1 Q9NZL9;Q9NZL9-2;Q9NZL9-4 Q9NZL9 MAT2B Methionine adenosyltransferase 2 subunit beta 0 ; 178.95 1.1730999999999997e-05 420720000.0 310860.0 427450.0 403440.0 401450.0 414580.0 489760.0 454600.0 444770.0 617270.0 478620.0 False True 309186.3642997927 441677.41485101834 460240.84523665736 452273.5288384045 467374.3055918208 455904.0439710313 432609.261259356 477960.99589629704 465152.07949423476 448074.06183280214 0.6900340605191401 0.9857241301680821 1.027153509743653 1.0093722608901414 1.043073780437263 1.0174747498353318 0.965486061589486 1.0667008796296875 1.0381142742152418 1.0 18.773377688433865 4.74350164747061 3.4725981921461297 1.0225117476333436 0.6471001309900766 0.9363197249136018 0.02572242091169083 0.06668992385386678 1.381716608105783 0.006297909821213704 0.06638054993623331 55398.96454617908 -4.74350164747061 -0.37541161664326705 ESMAGNKPANAVLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESMAGNKPANAVLHK 15 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y795 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 68.919 0.030763 413440000.0 911020.0 876190.0 835030.0 788930.0 742170.0 1052100.0 1031400.0 935620.0 1303600.0 1035400.0 False True 906115.1695438381 905353.4544819596 952594.9657891275 888808.4571091845 836680.950313768 979370.803377005 981507.2416693791 1005440.715382094 982345.2473450588 969319.8855494632 0.9347947803940934 0.9340089561546094 0.9827457168581091 0.9169402901554624 0.8631628864598107 1.0103690411982464 1.012573100275362 1.0372640965806201 1.0134376298163037 1.0 19.886613322882177 2.596999697759972 7.996083897484712 1.0195100764637777 0.9294781914553774 0.702674795737882 0.028686524472280643 0.16458261566999802 10.162476309961527 0.009745081141016201 0.009174687749763571 395.3663449193941 -2.596999697759972 -0.09003188500840031 ESNCYDPER ddPTM_BT-474_Trastuzumab_2h_R1 5 ESNCYDPER 9 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;; 124.81 0.0012082 7079410000.0 6285560.0 7633980.0 6785050.0 7098430.0 6687390.0 7207690.0 7212870.0 6320290.0 7771610.0 7140060.0 False True 6251719.243351363 7888072.409461635 7740326.063288179 7997090.510181573 7538989.477234051 6709439.355377251 6863955.922260818 6791942.133582326 5856400.84973867 6684375.257887092 0.9352735300093713 1.1800762382623964 1.1579729989208998 1.1963856309152556 1.127852519700861 1.0037496544588194 1.0268657365042204 1.016092285598166 0.8761328656449275 1.0 22.672361297261872 2.7132876284089904 4.457090639507641 0.9900670204083756 1.1299351045972719 0.4254869090839356 0.07794243051348211 0.202406557585819 10.076007325945893 0.025315668033693117 0.02469850218162841 516.7584993764114 -2.7132876284089904 0.1398680841888963 ESNEEEQVWHFLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESNEEEQVWHFLGK 14 0 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4;H0YAK2 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ;;; 186.68 1.0356e-06 2536130000.0 1695690.0 1657060.0 1672570.0 1342800.0 1572680.0 2440610.0 1736030.0 1579780.0 2042940.0 1843660.0 False True 1686560.5934488708 1712214.240386076 1908053.317760945 1512798.3423196157 1772951.4759953353 2271896.37527797 1652051.5966213802 1697671.205560295 1539484.810993489 1725996.04036326 0.9771520640881137 0.9920151613011329 1.1054795452250101 0.8764784547253226 1.027204833924296 1.3162813367751514 0.9571583931755039 0.9835892817013625 0.8919399436568133 1.0 20.718997724133718 2.0869125840116394 21.61749347524829 0.9595346955037005 1.0482649971265987 0.14170641812437335 0.10958061207462762 16.987737315149054 4217.097124404899 0.04225442432828627 0.03120693960717057 122.15537577160526 -2.0869125840116394 0.08873030162289819 ESNTVFSFLGLKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESNTVFSFLGLKPR 14 1 Q9UJC5 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 0 ; 142.57 9.0416e-06 343160000.0 399910.0 489920.0 417510.0 423350.0 386740.0 478800.0 482230.0 378970.0 565220.0 487250.0 False True 397756.92899417767 506226.69103710656 476291.7789380244 476946.0665929461 435989.04661242885 445701.6829739658 458902.6926025052 407250.66577066726 425929.1045599677 456153.28784428735 0.8719808441454359 1.1097731936329094 1.044148516804315 1.0455828759821557 0.9557950325708454 0.9770875160854058 1.0060273702535636 0.8927934460261667 0.9337411697125879 1.0 18.7991591901665 2.6714531873611485 1.1687247907998097 0.9421382970758242 1.0227921018657467 0.11325454768226761 0.065380521339408 0.753005429982608 2.121784101452055 0.032463428675313113 0.028296202766616086 469.3028453974455 -2.6714531873611485 0.08065380478992246 ESNYFGLS(ph)PEER ddPTM_BT-474_Trastuzumab_2h_R1 2 ESNYFGLSPEER 12 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 ESNYFGLS(1)PEER;ES(0.005)NYFGLS(0.994)PEER 102.29 0.0024857 309230000.0 541218.0 557989.0 509459.0 536080.0 533881.0 579375.0 576026.0 499926.0 713270.0 624250.0 True False 538304.1424229725 576561.3265535269 581186.3989029899 603947.673034479 601867.5807893951 539324.1699520496 548161.4217469903 537233.0166927906 537494.1658283292 584409.8305526866 0.9211072680175295 0.9865702053784119 0.9944842959834399 1.0334317485099713 1.0298724445141494 0.9228526656404827 0.9379743342588616 0.9192744348340613 0.9197212944210941 1.0 19.156620920836822 2.7241191431896543 24.9030737004424 0.9335897623558347 0.995049119315361 0.3416831164608086 0.03628717745543544 780.0816796043749 1345181.458741572 0.011846215982956198 0.011217926843745136 529.8087702812562 -2.7241191431896543 0.06145935695952631 ESPFSTSAS(ph)PLLSGSQHFDVPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ESPFSTSASPLLSGSQHFDVPPR 23 0 O14980 O14980 XPO1 Exportin-1 1 ES(0.001)PFS(0.029)T(0.031)S(0.158)AS(0.781)PLLSGSQHFDVPPR;ES(0.001)PFS(0.031)T(0.141)S(0.025)AS(0.801)PLLSGSQHFDVPPR;ES(0.002)PFS(0.019)T(0.062)S(0.062)AS(0.856)PLLSGSQHFDVPPR 152.88 3.6705e-08 1204550000.0 522960.0 619220.0 577670.0 643260.0 632930.0 677910.0 662760.0 543100.0 663980.0 664030.0 True False 520144.44146631873 639830.3633736053 659000.9148023487 724696.6500450672 713529.8838299768 631047.6773284898 630699.7668109341 583628.8798059206 500351.0258761668 621651.0368953146 0.8367145079722766 1.0292436196504762 1.060081743116796 1.165761185993333 1.147798107751141 1.0151156193354145 1.0145559636815071 0.938836815459544 0.8048744330501703 1.0 19.245745426787952 1.748815476857213 2.3679168563253445 0.8960501795803734 1.0513033331556456 0.26651653430722977 0.0948623310056596 0.34066259018864853 3.9093842617751364 0.06265912456090543 0.027608727759248206 56.08096484688653 -1.748815476857213 0.15525315357527225 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 1 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR 416.45 1.2641999999999989e-200 10203610000.0 1817140.0 2042090.0 1935010.0 2026790.0 2006870.0 2037070.0 1944800.0 1970510.0 2287560.0 2141540.0 True False 1807356.7201432334 2110059.7311805286 2207442.5885915738 2283381.4061885397 2262432.9988495815 1896252.1456469866 1850722.5941425313 2117559.462247034 1723821.4897335551 2004865.0837353638 0.9014854589496153 1.052469689007288 1.1010429611945647 1.138920231946111 1.1284714453874023 0.9458253131497432 0.9231157792894263 1.0562104549707174 0.8598191986673824 1.0 20.935073723922088 2.724839063270712 24.673830776983813 0.9655617751029455 1.069977903347087 0.31878105016995295 0.0778535040744227 868.5465228644607 1561801.5491350726 0.025880721364899145 0.02452477286923336 530.6877505564241 -2.724839063270712 0.10441612824414159 ESQFLKEELVAAVEDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESQFLKEELVAAVEDVR 17 1 P35221-2;P35221;G3XAM7;E5RIB1;E5RJL0;E5RHV7;E5RG03;E5RIE0;E5RGY6 P35221-2 CTNNA1 Catenin alpha-1 0 ; 127.5 3.6537e-05 190226000.0 320720.0 348820.0 338040.0 324680.0 339810.0 422520.0 411880.0 352280.0 514770.0 388040.0 False True 318993.27915534173 360430.26283385727 385633.0937036476 365784.4547098096 383082.78928833245 393312.18690509576 391955.79086560354 378568.92244159343 387911.8310646023 363274.9549822421 0.8781042424764323 0.9921693138781784 1.0615460504908698 1.0069079899209958 1.054525736042163 1.0826845658113755 1.0789507657767474 1.0421002528514496 1.0678188125673693 1.0 18.47070238087721 4.776784366873615 1.6774236927408954 1.0529484082787128 0.8030158483107931 0.7921504255159952 0.02664533305901629 0.4356419170234897 1.1106481137024937 0.006813724348405092 0.1809122992546766 59811.45493013238 -4.776784366873615 -0.24993255996791974 ESQLAHIKDEPPPLS(ph)PAPLT(ph)PATPSSLDPFFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 ES(0.017)QLAHIKDEPPPLS(0.983)PAPLT(0.992)PAT(0.007)PSSLDPFFSR;ES(0.017)QLAHIKDEPPPLS(0.983)PAPLT(0.999)PATPSSLDPFFSR 93.975 0.0031409000000000003 156533000.0 96229.0 119331.0 130018.0 128939.0 135913.0 128708.0 129687.0 107078.0 185099.0 139914.0 True False 95710.9137560469 123302.86019788729 148323.4042632848 145262.66417958654 153220.7149305351 119810.71890604276 123413.54435754976 115068.70409106683 139483.83164952678 130984.56873359797 0.730703736183671 0.9413540952954995 1.132373116141271 1.1090059354627335 1.169761571244029 0.9146933876594191 0.9421991120843671 0.8784905367371822 1.0648875130719786 1.0 16.999037332590085 -2.220130407844402 8.895819827324742 2.193132783797948 0.9868644479834997 0.000927023124103199 0.12738458821425638 0.4967722697821304 0.012292818471237133 0.020326709622455186 0.03041689338460791 0.0060237867956135106 2.220130407844402 -1.2062683358144484 ESQLAHIKDEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_BT-474_Trastuzumab_2h_R1 7 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 ES(0.001)QLAHIKDEPPPLS(0.999)PAPLTPATPSSLDPFFSR;ES(0.002)QLAHIKDEPPPLS(0.998)PAPLTPATPSSLDPFFSR;ES(0.061)QLAHIKDEPPPLS(0.939)PAPLTPATPSSLDPFFSR;ES(0.175)QLAHIKDEPPPLS(0.825)PAPLTPATPSSLDPFFSR;ES(0.053)QLAHIKDEPPPLS(0.946)PAPLT(0.001)PATPSSLDPFFSR;ES(0.188)QLAHIKDEPPPLS(0.811)PAPLTPATPSSLDPFFSR;ESQLAHIKDEPPPLS(1)PAPLTPATPSSLDPFFSR 239.91 4.4391e-47 6663504000.0 1501849.0 2155074.0 2118983.0 2237775.0 2008701.0 2185165.0 2247707.0 1805584.0 2673536.0 2330390.0 True False 1493763.211855111 2226804.3353202557 2417317.38786959 2521077.085555761 2264497.1658463925 2034109.6868751186 2138976.8253354235 1940325.8466497757 2014678.8763469753 2181662.5150527447 0.6846903228838752 1.0206914772363038 1.1080161900343912 1.1555761114109855 1.0379685905689429 0.9323667949742177 0.9804343295891074 0.889379467842608 0.9234603713664978 1.0 21.056996515386896 2.730797994713208 22.931164000761903 0.9372790467963419 1.016950659328873 0.04177456462012197 0.1211067218164972 516.3037126843459 1525180.478359186 0.040191528396005996 0.03862732149853078 538.0194729626746 -2.730797994713208 0.07967161253253119 ESQNTAEIISPPS(ph)PDRPPHSQTSGSCYYHVISK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESQNTAEIISPPSPDRPPHSQTSGSCYYHVISK 33 1 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 ESQNTAEIISPPS(0.999)PDRPPHS(0.001)QTSGSCYYHVISK 168.32 1.4348e-14 286420000.0 150660.0 269930.0 318610.0 276000.0 256370.0 346500.0 330910.0 275060.0 319940.0 347790.0 True False 149848.86329989944 278914.45687386935 363467.5185922353 310941.5717010823 289017.1998759597 322547.27057326445 314902.61910104094 295586.3739263791 241095.07397635595 325593.74444200034 0.4602326238076505 0.8566333402746127 1.1163221800073053 0.954998604884044 0.887662016883263 0.9906433280100116 0.9671642176071849 0.9078380004903115 0.7404782127787576 1.0 18.312713456138024 4.7096939094938985 3.7959102006387275 0.9436496651448303 0.4243607763401162 0.7169795182913008 0.09092183045166437 0.1174631900684003 3.249547339822273 0.02188509026459357 0.16166262438128218 51250.00469269849 -4.7096939094938985 -0.519288888804714 down ESQQQHGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESQQQHGLR 9 0 Q9UHB9;Q9UHB9-4;Q9UHB9-2 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 139.98 0.00011019 184480000.0 82749.0 94408.0 92767.0 113870.0 88927.0 97498.0 122280.0 80055.0 158610.0 121870.0 False True 82303.48857827816 97550.31320915873 105827.78725478117 128285.93032464586 100251.326338376 90758.19274560516 116364.8492450375 86029.11061105315 119522.69076511172 114092.15226184357 0.7213772984963082 0.8550133490801276 0.9275641238838624 1.1244062609164152 0.8786873097835632 0.7954814677990599 1.0199198361862616 0.7540317971530135 1.0475978268058697 1.0 16.79984003484259 4.620512456226571 2.5822304391358095 0.9279039457067102 0.7046075123500706 0.2795387356845397 0.10815429755124469 0.5317133411092426 5.34969115358657 0.026978205638307322 0.22743124026629952 41736.15688585111 -4.620512456226571 -0.22329643335663962 ESQSHPGDFVLSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESQSHPGDFVLSVR 14 0 Q06124;Q06124-1;Q06124-3;A0A1W2PPU4 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 136.01 2.9548e-05 1711010000.0 654790.0 876840.0 843250.0 957660.0 815840.0 931060.0 917060.0 758750.0 970910.0 941100.0 False True 651264.6833940079 906025.0893390271 961972.2703396064 1078899.657808908 919732.3881374674 866698.0136794919 872698.3042905943 815371.7778544312 731642.2400274554 881038.1922837548 0.7392014206624268 1.0283607422176595 1.0918621675708076 1.2245776258714427 1.043918863214559 0.9837235448702951 0.9905340221727023 0.92546700585237 0.8304319227421373 1.0 19.748845034586008 1.9913419559385022 1.7452867463977293 0.9087906587340933 1.035666602251381 0.11590934230000893 0.11977599232759686 0.7063613148948417 4.0111065669398025 0.07769235702006617 0.038424661622726654 98.02615225331975 -1.9913419559385022 0.1268759435172877 ESQSVEEALKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESQSVEEALKK 11 1 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 127.37 0.00046177 580190000.0 192980.0 172220.0 120260.0 119750.0 133200.0 180700.0 154810.0 138690.0 250120.0 188890.0 False True 191941.01712209373 177952.23859081147 137191.5626813414 134910.33772175602 150162.23046174602 168208.63432204587 147321.24886836947 149039.75205355012 188481.27743628868 176834.8784831347 1.0854251082622242 1.0063186635875305 0.7758173266391324 0.7629170154609677 0.8491663621442614 0.9512186496516775 0.8331006311202344 0.8428187546031227 1.0658603045567436 1.0 17.432043330907817 1.2374503803024184 24.99996690397773 1.032930202097968 0.8806145149144214 0.25881449082450125 0.0971662987894814 40.46060058534114 910874.998611501 0.08211494704000608 0.024950012138581425 17.276285814879227 -1.2374503803024184 -0.1523156871835466 ESS(ph)PEKEAEEGCPEKESEEGCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSPEKEAEEGCPEKESEEGCPK 23 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 ES(0.419)S(0.581)PEKEAEEGCPEKESEEGCPK 219.26 1.1021e-32 660010000.0 528920.0 265150.0 193860.0 183500.0 192150.0 435550.0 351490.0 344230.0 833740.0 343310.0 True False 526072.3534885364 273975.3574634399 221153.80293867333 206731.08118532092 216619.163537721 405441.4536744167 334487.0858778065 369918.1905645219 628275.9485436245 321399.66187752143 1.6368167608372015 0.8524444483325129 0.6880959415039781 0.6432212155347622 0.673986905500448 1.261486870602004 1.0407200926218534 1.1509601111699048 1.954812101772052 1.0 18.294008885690392 1.4993349883868534 4.137552359039792 1.5015965063429328 0.9479590432029146 0.22850105051442693 0.3601447585601763 0.2381147643979106 8.654485196163295 0.23107229098750826 0.09207993052663703 31.574391411235776 -1.4993349883868534 -0.5536374631400183 ESS(ph)PIPS(ph)PTSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSPIPSPTSDR 12 0 Q01082;A0A087WUZ3 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 2 ES(0.021)S(0.979)PIPS(0.964)PT(0.036)SDR 164.53 8.3408e-05 153300000.0 257870.0 255740.0 238960.0 220910.0 219320.0 264620.0 245900.0 239970.0 267120.0 241860.0 True False 256481.65657205041 264252.15130190545 272603.49092244555 248877.1833495874 247249.10198851436 246327.44224847716 234004.8775707777 257877.7799429697 201291.85522461773 226424.2877332362 1.1327479889181613 1.1670662805097856 1.2039498662070023 1.0991629292119238 1.0919725284939974 1.087902029921322 1.0334795790391207 1.13891395010941 0.8890029300291827 1.0 17.78866919370612 2.2572818116113127 0.45762617997840493 0.9796196875043734 1.1745459309299724 0.5399682975675288 0.058589336278579235 0.8791243080436439 0.40259078623371136 0.05854957025206783 0.05888439987060051 180.83471732055986 -2.2572818116113127 0.19492624342559894 ESS(ph)PLS(ph)SRK ddPTM_BT-474_Trastuzumab_2h_R1 3 ESSPLSSRK 9 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 2 ES(0.001)S(0.969)PLS(0.605)S(0.424)RK;ES(0.001)S(0.88)PLS(0.636)S(0.482)RK;ESS(0.998)PLS(0.611)S(0.391)RK 77.14 0.022353 1071790000.0 542193.0 742510.0 683920.0 704870.0 688500.0 693020.0 622400.0 608416.0 555083.0 646240.0 True False 539273.8931313058 767223.9964932264 780209.9912607934 794106.4697280502 776176.3939407815 645113.1585936038 592292.1342011061 653819.091393848 418290.2323811264 604996.4099260998 0.8913670962066998 1.2681463623675762 1.2896109438998091 1.312580466097394 1.2829438013286578 1.0663090689619203 0.9790010725409999 1.0806991259232626 0.6913929165831256 1.0 19.20656705583697 2.470349076887934 2.697819471970152 0.9576523756918354 1.22196833187522 0.42339465365583506 0.14755883091622224 0.28132550675666484 4.167592964201296 0.055682164407253716 0.047145547270582545 295.35823009573085 -2.470349076887934 0.26431595618338455 ESSAMAS(ph)PLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSAMASPLPR 11 0 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 ESSAMAS(1)PLPR 127.7 0.001033 0.0 341290.0 246520.0 225260.0 224320.0 209140.0 271530.0 266370.0 210360.0 331040.0 255450.0 True False 339452.5325608841 254725.2691755134 256974.65000498033 252718.88899995247 235772.73933010153 252759.77021286776 253484.66546778375 226058.13138643597 249459.6277087356 239146.9622982518 1.4194306684838267 1.065141144706798 1.07454699627125 1.056751407466236 0.9858905882151991 1.056922353450757 1.0599535241081202 0.9452686716735623 1.0431227112875572 1.0 17.867537940420945 ESSANNSVS(ph)PSESLR ddPTM_BT-474_Trastuzumab_2h_R1 9 ESSANNSVSPSESLR 15 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 ESSANNS(0.002)VS(0.998)PSESLR;ESSANNSVS(1)PSESLR;ESSANNS(0.003)VS(0.997)PSESLR;ESSANNSVS(0.996)PS(0.004)ESLR;ESSANNS(0.059)VS(0.941)PSESLR;ESSANNS(0.001)VS(0.999)PSESLR;ESSANNS(0.084)VS(0.892)PS(0.024)ESLR;ESSANNSVS(0.959)PS(0.041)ESLR;ESSANNS(0.002)VS(0.997)PS(0.002)ESLR 444.62 4.0208999999999976e-175 20172900000.0 4412292.0 5019122.0 4544759.0 4681751.0 4754784.0 4861647.0 4993430.0 4499569.0 5037490.0 4588738.0 True False 4388536.710123728 5186180.441646677 5184621.563446622 5274460.196569251 5360277.558587246 4525572.785976049 4751878.71414497 4835349.687128422 3796068.088407687 4295880.812223745 1.0215685448340035 1.207244955886491 1.2068820784538539 1.227794817202796 1.247771479910431 1.0534679577465755 1.1061477079679918 1.1255781755791832 0.8836530281766984 1.0 22.0345225361114 1.343744315000795 4.677523975261711 0.9436138087876265 1.1560172225950058 0.5456796164545681 0.07573989455949248 0.15481849090009378 5.087475308693615 0.0572454489653878 0.01963300830480352 22.067051826956504 -1.343744315000795 0.21240341380737937 ESSEPTGS(ph)PAPVIQHSSATAPSNGLSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSEPTGSPAPVIQHSSATAPSNGLSVR 28 0 P17544;P17544-2;P17544-1;P17544-3;P17544-4 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 ESSEPT(0.05)GS(0.95)PAPVIQHSSATAPSNGLSVR 211.5 5.5811e-26 207070000.0 27159.0 54425.0 60457.0 57301.0 62676.0 59290.0 58276.0 62609.0 52659.0 59209.0 True False 27012.778961648557 56236.50322439271 68968.82009833575 64555.30072479612 70657.417090243 55191.42185364755 55456.96724406117 67281.2015020601 39681.89504444879 55430.23092862479 0.48732935997383436 1.0145457141754672 1.2442455848171379 1.164622619161037 1.274709051478166 0.9956917178410326 1.000482341765287 1.213799769095231 0.715889044293276 1.0 15.75838539761792 4.725025852335056 3.969406314163248 1.0950754101746536 0.43931808709278586 0.5536247820715191 0.15675384665366912 0.15279121138478025 4.9983978968765035 0.03643223764201249 0.2829626154013654 53091.604723678756 -4.725025852335056 -0.6557573230818677 ESSIIAPAPAEDVDT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESSIIAPAPAEDVDTPPR 18 0 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR 218.88 8.532299999999999e-18 1156820000.0 1383020.0 1415540.0 1274800.0 1254740.0 1308020.0 1566010.0 1597750.0 1366680.0 1790560.0 1766070.0 True False 1375573.9739879668 1462655.3931879988 1454280.7592397642 1413589.9553486106 1474588.5937580543 1457755.414691021 1520460.728502279 1468668.6014604203 1349300.480274753 1653357.9005914018 0.8319880247924104 0.884657455391123 0.8795922278652261 0.8549812202445539 0.8918750097789461 0.881693802757156 0.9196198403010105 0.8882944224811103 0.8160970348840452 1.0 20.656967626391413 -2.0840154535562947 2.290944040797786 1.1929764529650309 0.8760934057268609 0.6344777076553535 0.02898275408365703 5358414.4056786895 1513312.0970704665 5398779.056077721 0.007193246055097292 0.008241087901224098 2.0840154535562947 -0.31688304723816996 ESSPLS(ph)SRK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSPLSSRK 9 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 ESSPLS(0.5)S(0.5)RK 56.434 0.07470399999999999 4446900000.0 1025000.0 2278800.0 2281500.0 2936500.0 2504700.0 1686800.0 1703700.0 1376000.0 698360.0 1634100.0 True False 1019481.513888205 2354648.4804363116 2602715.3688465036 3308260.598913872 2823658.698479991 1570195.486300097 1621285.5222339719 1478684.1071864227 526258.5355445645 1529810.3389766053 0.6664103960561581 1.5391767335103101 1.701332055702825 2.1625298997044258 1.8457573638631108 1.0263987935592775 1.0597951137645993 0.9665800194392826 0.34400247019942015 1.0 20.54492137258285 2.6009752851475056 4.4630740496382835 0.8793830345643664 1.6171226716019087 0.4362041955860999 0.40168292495598873 0.23357088858420802 7.449428554926141 0.14059821380585721 0.1312915343842075 399.00219527879057 -2.6009752851475056 0.7377396370375423 ESSPTS(ph)PVAETEGTIMEESSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESSPTSPVAETEGTIMEESSR 21 0 Q8IWV8;Q8IWV8-4 Q8IWV8 UBR2 E3 ubiquitin-protein ligase UBR2 1 ESSPT(0.03)S(0.97)PVAETEGTIMEESSR;ESSPT(0.003)S(0.997)PVAETEGTIMEESSR 341.36 1.2150999999999999e-80 164257000.0 294403.0 351740.0 309648.0 331470.0 319960.0 343780.0 347010.0 313090.0 343880.0 326470.0 True False 292817.96695924824 363447.4532686803 353243.74689133547 373434.06801361556 360705.00944850006 320015.29777107376 330223.80059306824 336454.3656388057 259135.38175592112 305634.40509497124 0.9580661145405391 1.1891575268031247 1.1557721938456842 1.2218325613491603 1.1801845716172448 1.0470525976014837 1.08045362396441 1.1008393035275517 0.8478606381876371 1.0 18.221447430330237 1.3344817285459225 5.979435440369815 0.9259249648625455 1.1227174097720631 0.4765230845366837 0.08071399733836865 0.16252122822663145 7.922002667065115 0.05613756975507777 0.01998237822324204 21.601391524005948 -1.3344817285459225 0.19679244490951764 ESSSCGKDT(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESSSCGKDTPSK 12 1 O43148;O43148-2;K7EPP5 O43148 RNMT mRNA cap guanine-N7 methyltransferase 1 ESS(0.001)S(0.001)CGKDT(0.997)PSK;ESSS(0.001)CGKDT(0.998)PS(0.001)K;ESSS(0.002)CGKDT(0.996)PS(0.001)K;ESS(0.001)S(0.001)CGKDT(0.998)PSK 112.34 0.0020768 3453590000.0 5744010.0 2971790.0 2394980.0 2166450.0 2245920.0 3594820.0 4475300.0 3721750.0 7683170.0 4432960.0 True False 5713084.888379504 3070704.233665006 2732172.3664606614 2440722.3478688756 2531924.5993892225 3346318.5546960584 4258812.641693782 3999485.8836635714 5789755.7027033875 4150044.697552003 1.376632134046531 0.7399207616911523 0.658347696368739 0.5881195326181885 0.6100957420730275 0.8063331358021179 1.0262088608843027 0.9637211584787889 1.395106830082723 1.0 21.984695444239 1.8921002264366875 1.6067558401537643 1.1583474408706187 0.770797884403021 0.28134521482560026 0.23580160374274065 0.4734006349709616 2.2880713980200182 0.16518052550474083 0.07363378102616486 78.00101004056587 -1.8921002264366875 -0.3875495564675977 ESSSVLSCDISADDKYIVTGSGDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSSVLSCDISADDKYIVTGSGDKK 25 2 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YNI7 H0YKT5 TLE3 Transducin-like enhancer protein 3 0 189.33 5.8915999999999995e-18 57119000.0 68754.0 41781.0 51282.0 46587.0 45779.0 66060.0 67920.0 60380.0 95981.0 67786.0 False True 68383.83610328745 43171.65532785217 58502.059848865356 52484.90942332728 51608.68429660858 61493.42768851333 64634.450120403475 64885.86220342745 72327.76862950753 63459.839445485675 1.0775923276961907 0.6802988426237384 0.9218753208337498 0.8270570786491468 0.8132495251731976 0.9690132881810777 1.0185095122392618 1.0224712632493624 1.1397408071232158 1.0 15.95355625076569 2.466588238195032 2.541334659297248 1.045758868027511 0.8551864088415938 0.41995440850857824 0.09998331856766032 0.25482732947438475 3.343381055475668 0.035589161346051806 0.02985566848929117 292.8115733639792 -2.466588238195032 -0.19057245918591714 ESSTSEGADQKMS(ph)S(ph)PEDDSDTKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 2 ESSTSEGADQKMS(0.958)S(0.55)PEDDS(0.481)DT(0.011)KR;ESSTSEGADQKMS(1)S(1)PEDDSDTKR;ES(0.005)S(0.006)T(0.006)S(0.007)EGADQKMS(0.978)S(0.998)PEDDSDTKR 139.16 4.4613e-07 2547570000.0 2024310.0 1237773.0 1265040.0 1050496.0 1113020.0 1875160.0 1796540.0 1669322.0 3368240.0 1796108.0 True False 2013411.3398819845 1278971.5260554198 1443146.6360752033 1183488.6858902175 1254756.4996136068 1745534.6028518404 1709634.496750733 1793895.2842853584 2538182.3841036484 1681478.8497145781 1.1974050938694532 0.7606230231635196 0.8582603559480808 0.7038379852896207 0.7462219937090466 1.0380948907850582 1.016744574004564 1.0668556934806894 1.5094940888102701 1.0 20.68129920153164 1.9672098261558184 1.374200635186993 1.2249369148695441 0.8514550595913142 0.3802264522570987 0.18178837727158179 0.41999544278566675 1.473089563920346 0.12662346017628506 0.05811953811457052 92.7277722520915 -1.9672098261558184 -0.37348185527822997 ESSTVFELKR ddPTM_BT-474_Trastuzumab_2h_R1 3 ESSTVFELKR 10 1 B8ZZU8;Q15370;Q15370-2;I3L0M9;A0A0B4J296 B8ZZU8 TCEB2 Transcription elongation factor B polypeptide 2 0 ;; 152.7 2.8174e-05 1358840000.0 844500.0 1105390.0 949850.0 952880.0 1033420.0 1169300.0 1286730.0 1126750.0 1603780.0 1328940.0 False True 839953.3058327716 1142182.2379276343 1083580.623755798 1073514.5102990137 1165019.911439771 1088469.043236129 1224485.9541140578 1210833.806520569 1208549.9085509796 1244125.9114372241 0.6751352882462281 0.9180600029527367 0.8709573635549773 0.8628664514019173 0.9364164034602662 0.8748865635140747 0.9842138507504614 0.9732405662396373 0.9714048212008165 1.0 20.246701069755513 6.490796819626044 0.3486020808444105 0.9817579517906198 2.1099811175857324e-25 0.7114920805274478 0.048690406643949 12.234306508188645 0.45072183296198387 0.040989391334893946 6.473210655422194 3095970.5411810637 -6.490796819626044 -0.9817579517906198 ESSYACYYDEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESSYACYYDEKR 12 1 Q99538-3;Q99538-2;Q99538 Q99538-3 LGMN Legumain 0 75.102 0.055664 353530000.0 119060.0 137830.0 106330.0 117640.0 116040.0 165440.0 172780.0 136390.0 191920.0 156460.0 False True 118418.9941888094 142417.58823000573 121300.33976307206 132533.21193809906 130817.00617703456 154003.52220387 164421.9713163031 146568.11437438664 144623.88759624388 146474.5888478546 0.8084610110209152 0.9723023587247414 0.8281323109844573 0.9048205083255999 0.893103760905014 1.0514009523101362 1.1225289834203986 1.0006385102512845 0.9873650353541317 1.0 17.160290874763326 2.7514706796044948 10.169443007078288 1.0373033644254692 0.8847022797728523 0.6556569101027391 0.054638332636276696 0.22020969237878044 167.27808551620737 0.01649293595764812 0.017025557157347465 564.2488460929237 -2.7514706796044948 -0.1526010846526169 ESSYGPEIDSHDFVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESSYGPEIDSHDFVLR 16 0 E5RGL4;E5RHV6;Q11201 E5RGL4 ST3GAL1 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 0 ; 222.27 9.7978e-15 429510000.0 105640.0 151441.0 168225.0 138242.0 151226.0 165034.0 167949.0 138769.0 170715.0 146719.0 False True 105071.2459777074 156481.62213698213 191909.6177620878 155743.42302572855 170483.73471327304 153625.58802824857 159824.6652425154 149124.64743470403 128644.57571380155 137355.26780754438 0.7649597110824187 1.1392473301878503 1.397176976357269 1.1338729523206112 1.2411881789065904 1.1184542863219589 1.1635859897740075 1.0856856807534339 0.9365827591996847 1.0 17.067552715713962 1.427470491236755 3.4090678662362275 0.9697640500217896 1.149481109178554 0.16157081503962756 0.14890205379030122 0.40094212948871116 8.273995946880754 0.113000391058213 0.03878486449426981 26.759037688917534 -1.427470491236755 0.1797170591567644 ESTAEKDEL ddPTM_BT-474_Trastuzumab_2h_R1 4 ESTAEKDEL 9 1 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 ;;; 113.26 0.006191 759160000.0 1570940.0 1679600.0 1545460.0 1342640.0 1526260.0 1855660.0 2023800.0 1853800.0 2600480.0 1860820.0 False True 1562482.2335878436 1735504.4706603598 1763047.334620871 1512618.0863360213 1720620.164148228 1727382.591953781 1925901.0623332267 1992139.9694056595 1959626.548646732 1742060.874471845 0.8969159783589963 0.9962364094690589 1.0120469154990859 0.868292324626494 0.987692330022556 0.9915741850740352 1.1055302891852834 1.143553591380458 1.124889822946542 1.0 20.73236360759171 2.331767156149316 2.8929392928152105 1.1114610043560982 0.9549861227347336 0.5867940527090564 0.05533054601411773 0.1642000552341822 2.7937399931115134 0.021071026758436345 0.016426611419151083 214.66792389708516 -2.331767156149316 -0.15647488162136458 ESTESSNTT(ph)IEDEDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESTESSNTTIEDEDVK 16 0 E9PF82;E9PBG7;Q13557;D6R938;Q13557-8;Q13557-6;Q13557-11;Q13557-12;Q13557-10;H0Y9J2 E9PF82;Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 ESTESSNT(0.007)T(0.993)IEDEDVK;ESTESSNT(0.006)T(0.994)IEDEDVK 425.79 4.733099999999997e-159 1114470000.0 2597500.0 1991560.0 1598460.0 1669060.0 1568320.0 2428990.0 2259990.0 2321560.0 3575000.0 2502220.0 True False 2583515.3486093823 2057847.870676556 1823509.27393661 1880362.8248674239 1768036.2558390796 2261079.6385274273 2150665.649699802 2494806.595842816 2693989.1525457036 2342526.1773416796 1.1028757644626108 0.878473799175137 0.7784370956340583 0.8027072837244777 0.7547562426155953 0.9652313218088865 0.9180967412455545 1.065006922857078 1.1500358794721635 1.0 21.159633739176623 1.9118855530709888 1.7583364060060702 1.0864632234511167 0.8630214968495079 0.41773560003874366 0.1006591599603996 0.3300028462748805 1.9023365767888212 0.06765859126738748 0.0313673686154369 81.63672108262612 -1.9118855530709888 -0.22344172660160877 ESTLHLVLR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESTLHLVLR 9 0 M0R2S1;P62987;P0CG48;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5GYU3;F5H6Q2;M0R1M6;J3QTR3;J3QS39;P0CG47;P62979;A0A2R8Y422 M0R2S1;P62979 UBA52;UBC;UBB;RPS27A Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ;;;;; 180.44 4.8644e-05 2964700000.0 2891110.0 3742720.0 3392420.0 3435270.0 3085500.0 3617520.0 3272170.0 3197700.0 3782460.0 3565660.0 False True 2875544.584992521 3867294.172677985 3870043.2485567634 3870174.8297738284 3478420.1358086886 3367449.3571261056 3113882.6361967153 3436328.611591589 2850323.4153672797 3338096.526084892 0.8614324248930938 1.1585327573537143 1.1593563033049163 1.1593957213433213 1.042037013797314 1.008793284080266 0.9328318135392126 1.0294275748885875 0.8538768705739914 1.0 21.670594242326228 2.7461929939360252 2.384905357486127 0.9646073222190753 1.0946198114785066 0.27068633196836167 0.0933473258282311 0.39028509694853414 4.38444421234477 0.03229222735595985 0.032276365047288286 557.433408922866 -2.7461929939360252 0.13001248925943132 ESTQLS(ph)PADLTEGKPTDPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESTQLSPADLTEGKPTDPSK 20 1 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 ES(0.004)T(0.029)QLS(0.964)PADLT(0.003)EGKPTDPSK;ES(0.022)T(0.02)QLS(0.958)PADLTEGKPTDPSK 115.45 6.618100000000001e-05 1675220000.0 766910.0 552380.0 463010.0 423880.0 478810.0 685200.0 632460.0 641530.0 917520.0 680530.0 True False 762781.0417717107 570765.6343792385 528197.7834449345 477543.1645386046 539783.6153707855 637833.7367873044 601865.4935681749 689404.2262233332 691409.490138108 637097.9927689539 1.1972742818675561 0.8958835859748642 0.8290683528122298 0.7495599891362199 0.8472536744697297 1.001154836503491 0.9446984614601411 1.082100766362559 1.0852482631959106 1.0 19.281155766555486 2.1369329877617775 1.6760538250996828 1.0598623849667013 0.896210699910956 0.20908993288381605 0.11546569970843819 0.539440623190345 2.9257313053965355 0.06924046716431465 0.038658488426736484 137.06702535342146 -2.1369329877617775 -0.16365168505574523 ESTQLS(ph)PADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK 47 2 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 ES(0.076)T(0.076)QLS(0.833)PADLT(0.008)EGKPT(0.001)DPS(0.001)KLES(0.001)PS(0.001)FT(0.001)GT(0.001)GDT(0.001)EIAHATEDLENNGSK 54.808 0.005588 618100000.0 118870.0 74952.0 82219.0 74034.0 69365.0 109980.0 114710.0 103280.0 187500.0 107070.0 True False 118230.01712769856 77446.73201055918 93794.72053964082 83406.69680912296 78198.22159143399 102377.34146507262 109161.0390652456 110987.27804521345 141293.13737127848 100236.70093276128 1.1795082642135957 0.7726384776221875 0.9357323182709123 0.8320973858175174 0.7801356276069911 1.0213558558132043 1.089032640234945 1.1072519048653013 1.4095948495557316 1.0 16.613051311904066 2.200456864091982 1.7505736951897428 1.1814345427426616 0.8929806735013561 0.39968710166213917 0.1450779130377081 0.33799661027614525 2.046569106632224 0.0745294525529032 0.044924803453676214 158.65613273513924 -2.200456864091982 -0.28845386924130545 ESTQLSPADLTEGKPTDPSKLES(ph)PSFTGTGDTEIAHATEDLENNGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK 47 2 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 ESTQLS(0.001)PADLTEGKPT(0.001)DPS(0.042)KLES(0.658)PS(0.132)FT(0.132)GT(0.034)GDT(0.002)EIAHATEDLENNGSK 132.88 3.3822e-11 795400000.0 689230.0 458390.0 451630.0 382580.0 381370.0 618020.0 634310.0 549410.0 1023800.0 630310.0 True False 685519.2622606519 473647.23404739343 515215.578361668 431014.5887731889 429935.2089429126 575297.7320625943 603626.0020004885 590409.7640474512 771498.2082171448 590083.0761644592 1.1617334744058887 0.8026788992595772 0.8731238009918365 0.7304303515613162 0.7286011517861044 0.9749436228573615 1.022950879940598 1.0005536303212006 1.3074399849456524 1.0 19.170558556255628 2.058833369775135 1.4799107231871642 1.1172528320907622 0.8545897090923088 0.3589332164318122 0.14037628887603754 0.4392349392241785 1.8086258712765868 0.09111071945308041 0.04576093578591627 114.50735150338055 -2.058833369775135 -0.2626631229984534 ESTSSKS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 13 ESTSSKSPPR 10 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 ESTS(0.001)S(0.016)KS(0.984)PPR;ESTSS(0.001)KS(0.999)PPR;ESTSS(0.001)KS(0.999)PPR;ESTS(0.003)S(0.051)KS(0.946)PPR;ES(0.003)T(0.01)S(0.047)S(0.235)KS(0.705)PPR;EST(0.002)S(0.009)S(0.045)KS(0.944)PPR;ES(0.004)T(0.011)S(0.013)S(0.047)KS(0.925)PPR;ES(0.008)T(0.04)S(0.04)S(0.034)KS(0.878)PPR;ES(0.001)T(0.01)S(0.008)S(0.041)KS(0.94)PPR;ES(0.004)T(0.003)S(0.003)S(0.01)KS(0.98)PPR;EST(0.001)S(0.001)S(0.02)KS(0.977)PPR;ESTSS(0.012)KS(0.987)PPR;ESTS(0.001)S(0.014)KS(0.986)PPR 117.63 0.00056454 51112337000.0 4312937.0 3953163.0 3662342.0 3508327.0 3358059.0 4412287.0 4824308.0 4083683.0 6144035.0 4806934.0 True False 4289716.626404348 4084741.6407175018 4177967.9199526776 3952480.8384831254 3785687.908874922 4107275.9850963852 4590937.791393756 4388428.1619821 4629919.9001010265 4500151.35669675 0.9532382994231403 0.9076898346183245 0.9284060887719641 0.8782995337704305 0.8412356849378804 0.9126972982773746 1.020174084714263 0.9751734584330386 1.0288364841798412 1.0 22.101542094740623 2.2909322976771764 6.318487500712624 1.001418563546392 0.900249753244798 0.7252365977503834 0.03083671085233784 0.1098929742231591 9.530049025945928 0.011404978327069045 0.00940534239081233 195.40348168412035 -2.2909322976771764 -0.10116881030159397 ESTSSKS(ph)PPRK ddPTM_BT-474_Trastuzumab_2h_R1 6 ESTSSKSPPRK 11 2 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 ESTS(0.007)S(0.007)KS(0.985)PPRK;ES(0.003)T(0.018)S(0.066)S(0.066)KS(0.846)PPRK;ES(0.003)T(0.003)S(0.003)S(0.012)KS(0.98)PPRK;ES(0.001)T(0.003)S(0.009)S(0.05)KS(0.936)PPRK;ESTSS(0.001)KS(0.999)PPRK;ES(0.004)T(0.004)S(0.004)S(0.022)KS(0.966)PPRK 117.2 0.00046239 20818490000.0 1585470.0 1255660.0 1161368.0 1092282.0 1139670.0 1554180.0 1669760.0 1544650.0 2202870.0 1603030.0 True False 1576934.005682275 1297453.8840375023 1324878.5196083828 1230564.789205805 1284800.2191466808 1446743.1947461956 1588987.3296973647 1659919.6265737708 1660002.2054456945 1500723.2529769712 1.0507826826525977 0.8645523959622501 0.8828266750583316 0.819981156928664 0.8561206848751322 0.9640306378116712 1.0588143593732589 1.1060797673928242 1.1061347934422707 1.0 20.517226524717703 2.3604091037566644 2.748424782538521 1.0821664479049231 0.8890441844149596 0.6150917203015085 0.06405071974204073 0.16351191211843488 2.5177582274670267 0.025088383394632454 0.019772146055736583 229.30266581457116 -2.3604091037566644 -0.19312226348996353 ESVASMGADS(ph)GDDFASDGSSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESVASMGADSGDDFASDGSSSR 22 0 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 1 ESVASMGADS(1)GDDFASDGSSSR;ESVASMGADS(1)GDDFASDGSSSR;ESVASMGADS(1)GDDFASDGSSSR;ESVASMGADS(1)GDDFASDGSSSR 438.1 6.733599999999997e-161 826730000.0 854580.0 966780.0 877510.0 819880.0 881510.0 914540.0 956150.0 871240.0 870430.0 959420.0 True False 849979.036232764 998958.6878691494 1001055.7805463482 923676.7239358088 993765.0733808834 851320.0023955947 909897.3716522942 936256.3528670779 655924.189664436 898188.994199213 0.9463253744169612 1.1121920824244549 1.1145268835528839 1.0283768003184224 1.1064097643134472 0.9478183410102852 1.013035538766003 1.0423823481624868 0.7302741337297615 1.0 19.77665951885279 1.2735184935514596 24.728356834499102 0.8651371306475538 1.0414267287716072 0.4089463021012467 0.08350704578623656 119.95157245195837 84850.85002181299 0.05189819437152956 0.01895040480356929 18.772343548983507 -1.2735184935514596 0.17628959812405343 ESVDHLTIPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 ESVDHLTIPSR 11 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;;;; 178.67 7.4427e-06 3777490000.0 2526250.0 3003530.0 2920520.0 3073900.0 2973900.0 3028560.0 3053720.0 2937670.0 3486120.0 3242990.0 False True 2512648.950692763 3103500.6803777707 3331703.830385095 3463055.4248259305 3352608.53731371 2819202.7756633963 2905999.8972567488 3156893.8525859993 2627012.437614726 3036019.601736578 0.8276128880246849 1.0222268257433496 1.0973920683777496 1.1406564775949046 1.1042776322643126 0.9285851692297492 0.9571742868835698 1.0398133960598548 0.8652817775326933 1.0 21.5337496747142 2.7298830963377316 24.795230195936615 0.9671032680163499 1.0464873924098406 0.158584838759672 0.09033949612041828 1170.2312353340585 3343823.484573027 0.030367823093047478 0.029021922613661922 536.8872572673821 -2.7298830963377316 0.07938412439349063 ESVEDKLELR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESVEDKLELR 10 1 Q6I9Y2;A0A5S6STF9 Q6I9Y2 THOC7 THO complex subunit 7 homolog 0 ; 106.49 0.0021974 756730000.0 1661210.0 1691600.0 1422720.0 1357900.0 1402430.0 1819990.0 1801530.0 1663740.0 2442700.0 1816450.0 False True 1652266.229937781 1747903.8834062067 1623026.6094960766 1529810.000771375 1581021.147646144 1694178.375095631 1714383.111387082 1787896.7271005355 1840729.3155030485 1700522.605858915 0.9716226201551963 1.027862774293059 0.9544281292728266 0.899611681432888 0.9297266276843099 0.9962692464414022 1.0081507328867094 1.051380746683746 1.0824491889499561 1.0 20.697546753931398 2.181801190718221 1.9735846322299486 1.048174384641493 0.9584128139379015 0.5085960897783142 0.036812002431405894 0.28362082040324743 2.1936423473399826 0.02027975902637458 0.012491742444160901 151.98516199455872 -2.181801190718221 -0.08976157070359159 ESVFTVEGGHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESVFTVEGGHR 11 0 Q99623-2;Q99623;F5GY37;J3KPX7;F5H0C5;F5H3X6;F5H2D2;F5GWA7 Q99623-2 PHB2 Prohibitin-2 0 ;;; 196.76 5.937e-08 3178410000.0 1477910.0 1893800.0 1878830.0 1750390.0 2174410.0 2782400.0 1730040.0 1621390.0 2251170.0 1982620.0 False True 1469953.0967712374 1956833.988173725 2143352.9329168876 1971989.1945284703 2451308.2247621994 2590059.2370650857 1646351.3558054008 1742386.3550515936 1696399.3176325348 1856087.4941936191 0.7919632567805547 1.0542789573741917 1.15476934122013 1.0624440931246104 1.3206857071288953 1.3954402716291896 0.887000942011444 0.9387414981795225 0.9139651675577605 1.0 20.82383328866039 ESVNS(ph)PVFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESVNSPVFGK 10 0 Q9UPS8-2;E7ESJ3;Q9UPS8 Q9UPS8-2 ANKRD26 Ankyrin repeat domain-containing protein 26 1 ESVNS(1)PVFGK;ESVNS(1)PVFGK 124.51 0.0031205 266750000.0 398640.0 392880.0 350750.0 343500.0 361920.0 444230.0 415310.0 380660.0 532810.0 447460.0 True False 396493.76653306815 405956.77329902485 400132.5512263469 386987.0647801519 408008.36673209514 413521.4257049391 395219.8686617315 409066.782152314 401506.1147882179 418902.7197102202 0.94650559157827 0.9690955780374241 0.9551920586792616 0.9238112969231944 0.9739931194868792 0.9871538336895888 0.9434645564849244 0.9765197572249942 0.9584710146211594 1.0 18.67625572531518 ESVPEFPLS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 9 ESVPEFPLSPPK 12 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK 195.1 7.0605e-07 9555580000.0 1755083.0 1269731.0 1092181.0 986984.0 996373.0 1666100.0 1579934.0 1402000.0 2258716.0 1607816.0 True False 1745633.828136051 1311993.2287664022 1245950.5913925671 1111936.0732022498 1123255.1955845424 1550926.4285775379 1503506.5564860054 1506624.3592117478 1702085.707043755 1505203.8063594683 1.1597325363919284 0.8716382613591903 0.8277620519749157 0.7387279174450218 0.7462479106409394 1.0303763663265346 0.9988724119177137 1.0009437611347232 1.1308008256772026 1.0 20.521527412134517 2.709953440308537 23.82590030635759 1.0268693902202648 0.8594696845351076 0.3343450761495307 0.11476103700525472 487.09090489363274 405679.7375174289 0.03859560644089098 0.0363964075807936 512.8064042740192 -2.709953440308537 -0.16739970568515716 ESVPSAS(ph)PTGIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESVPSASPTGIPK 13 0 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 ESVPS(0.003)AS(0.982)PT(0.015)GIPK;ESVPS(0.006)AS(0.977)PT(0.017)GIPK 160.46 4.5959e-05 534510000.0 818000.0 780450.0 671000.0 637100.0 610660.0 854100.0 717760.0 662830.0 876420.0 680710.0 True False 813595.978888343 806426.8064580126 765470.9675634461 717756.7946766646 688423.9313346073 795058.0773351381 683039.2066905305 712293.7403825404 660438.0344263245 637266.505014849 1.276696597869027 1.2654467167377985 1.2011787243480023 1.1263055394068453 1.080276345794396 1.2476068820165158 1.071826624050506 1.117732902603979 1.0363608148696526 1.0 19.28153730854496 7.99999999999993 0.14455030645729708 0.971555181768539 2.0966105263908217 0.7022001817464021 0.05146166945654261 39.84026411538928 0.38065802107935737 0.1976474103854517 9.333313781696338 99999999.99998385 -7.99999999999993 1.1250553446222828 ESVQVPDDQDFR ddPTM_BT-474_Trastuzumab_2h_R1 7 ESVQVPDDQDFR 12 0 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5H1Z6;F5GWK5;F5H3G8;F5H5A8 Q9Y365 STARD10 PCTP-like protein 0 ;;;;;; 296.65 6.217399999999998e-36 10873100000.0 4358520.0 4996940.0 4448820.0 4849940.0 4648520.0 5141330.0 5139370.0 4477570.0 5460580.0 5044360.0 False True 4335054.212597099 5163260.127185979 5075175.18616336 5463941.906724444 5240481.468063327 4785921.958489018 4890759.038800028 4811709.010039761 4114893.22702323 4722424.626106127 0.9179721341940329 1.0933493990868293 1.0746969169411802 1.1570204586260882 1.1097014527438551 1.0134459175974708 1.0356457595454946 1.0189064709344557 0.871351806077668 1.0 22.171096339487697 1.4978557799784278 3.102424679514083 0.9359566771969292 1.0634944087917164 0.32659852660923505 0.06743984669181342 0.24841014353095733 4.8972149578778295 0.049002565332880374 0.01774396013642434 31.467031869344403 -1.4978557799784278 0.1275377315947872 ESVS(ph)PEDSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESVSPEDSEK 10 0 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 ESVS(1)PEDSEK;ESVS(1)PEDSEK 276.35 7.358000000000001e-24 1022940000.0 1203470.0 1042160.0 1011700.0 823450.0 817400.0 1489950.0 1484300.0 1091840.0 1883760.0 1375420.0 True False 1196990.6512380864 1076847.6656009767 1154138.5661459607 927698.6855697697 921491.0448906228 1386953.2634650394 1412498.7384233654 1173318.6450511802 1419532.5890907703 1287639.5180436948 0.929600741872748 0.8362959124126811 0.8963211752769428 0.7204645963174681 0.7156436502435404 1.0771285317277552 1.0969675275028594 0.9112167098085014 1.102430120541392 1.0 20.29629732867613 2.729386456789723 24.999867360333532 1.0270401017802673 0.8193366604748948 0.6411091161542696 0.08131968909383092 466.7897982972803 1272014.3195522889 0.027541289003631 0.026293758184896193 536.2736481713138 -2.729386456789723 -0.20770344130537244 ESVSTEDLSPPS(ph)PPLPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ESVSTEDLSPPSPPLPK 17 0 Q13127-4;Q13127 Q13127-4 REST RE1-silencing transcription factor 1 ESVSTEDLSPPS(1)PPLPK;ESVSTEDLSPPS(1)PPLPK;ESVSTEDLSPPS(1)PPLPK;ESVSTEDLSPPS(1)PPLPK 308.73 4.8974999999999994e-58 998034000.0 1428080.0 1500720.0 1390940.0 1244770.0 1242920.0 1691890.0 1641480.0 1550390.0 2067110.0 1642020.0 True False 1420391.3759546021 1550670.5579956044 1586772.261732787 1402357.7543708573 1401198.494635984 1574933.6265806668 1562075.3413374533 1666087.974520901 1557698.4383548982 1537224.8777959514 0.923997130459622 1.0087467230031635 1.0322317083547825 0.9122658464788415 0.9115117214632905 1.0245304049715755 1.0161657958444779 1.0838283966036977 1.0133185201818367 1.0 20.55189679899159 2.57234913936484 6.840232186904866 1.0375269862861212 0.9622626437364653 0.39229264732951497 0.04266110295280828 0.2641919426185314 16.272708168754043 0.0147353160179906 0.013841324323296867 373.5503428651666 -2.57234913936484 -0.07526434254965586 ESWEMNSEEKLEQSTIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESWEMNSEEKLEQSTIVK 18 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ; 229.6 1.6330999999999999e-19 1184460000.0 776130.0 652160.0 596210.0 565330.0 609960.0 847900.0 810090.0 812390.0 1105200.0 875790.0 False True 771951.4023161503 673866.7513609547 680151.1856497794 636900.7200354094 687634.790483832 789286.6687419075 770902.8518556792 873014.6670328326 832838.2689212636 819896.332398457 0.9415231802024866 0.8218926280468661 0.8295575413297939 0.7768064020633837 0.8386850426227448 0.9626664220255668 0.9402442984475168 1.0647866474521086 1.0157848449997908 1.0 19.645081981497448 2.4372162570765936 1.642455434242466 1.0246312249717278 0.8357363321823109 0.7287813505599507 0.047772439267956435 0.18311060354754308 1.0028159584538805 0.02261193516420172 0.016909487040439094 273.6631093413921 -2.4372162570765936 -0.18889489278941685 ESWHGKPLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESWHGKPLPK 10 1 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 ; 104.79 0.0015829 3801600000.0 3926200.0 5295200.0 6234100.0 5011200.0 4067300.0 5906100.0 6672500.0 5319600.0 8229900.0 6523900.0 False True 3905061.77544183 5471447.530983998 7111807.092231419 5645617.406190092 4585246.546224161 5497825.208463958 6349725.68357469 5716575.564381463 6201751.420010051 6107539.1166082 0.6393838337969568 0.8958514102849574 1.1644308708383575 0.924368603851917 0.7507518918307905 0.9001702819248019 1.0396537070565643 0.9359867297184243 1.0154255751134953 1.0 22.54215976779312 2.338018574001181 7.532827888168586 0.9877821392982955 0.8883037470642196 0.16665120002634126 0.12838050737549148 0.5445260869620778 36.239070054971265 0.04718904220564116 0.03935743920272657 217.78029111116348 -2.338018574001181 -0.09947839223407595 ESWISDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESWISDIR 8 0 A0A0A6YYL4;P57737;P57737-3;I3L167;P57737-2;P57737-4;I3L2Y6;I3L1M1;I3NI06;I3L1G9;I3L359 A0A0A6YYL4 CORO7-PAM16;CORO7 Coronin;Coronin-7 0 87.323 0.035841000000000005 53916000.0 139390.0 168130.0 160750.0 165250.0 143680.0 166420.0 169070.0 141290.0 180260.0 161380.0 False True 138639.53972768493 173726.1054132688 183382.2027359523 186170.63305653565 161976.7963419193 154915.77711054197 160891.43818987964 151833.77725608257 135837.33836024883 151080.59023563087 0.9176528865253808 1.149890301211553 1.213803854286925 1.232260429789009 1.0721218131944965 1.0253850403213913 1.0649378450199818 1.0049853327901155 0.8991051606853793 1.0 17.204958799602053 2.1823685525681573 1.0695951992686101 0.9631078750896606 1.1294392696403797 0.33492414547156024 0.08765099323187311 0.601872184086979 1.3023234050454446 0.06555377231616473 0.035243866432435336 152.18384500015617 -2.1823685525681573 0.1663313945507191 ESYDDVSSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ESYDDVSSFR 10 0 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 ; 210.6 1.7262e-07 469700000.0 555800.0 664770.0 612430.0 665450.0 608680.0 646680.0 580020.0 585300.0 700230.0 585390.0 False True 552807.6345551851 686896.4675880489 698654.8206630131 749695.9017698736 686191.7900709871 601976.5337209784 551962.2167084281 628978.0580931787 527667.6991012812 548029.9090224066 1.0087180014340844 1.253392298995792 1.2748479766538585 1.3679835524072133 1.2521064612970452 1.098437373235347 1.007175352332569 1.1477075388370135 0.9628447105059501 1.0 19.063895105616822 2.6419630626445465 3.992346228467638 1.0522612063836925 1.242664694571221 0.48717567682130924 0.09691761288625979 0.21711083192590636 6.232586945247626 0.03308311493420135 0.031169121455141707 438.49340170948835 -2.6419630626445465 0.1904034881875285 ESYDYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESYDYLK 7 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 89.14200000000002 0.042085 324280000.0 556000.0 663140.0 646750.0 496770.0 458900.0 589850.0 682170.0 546860.0 923180.0 729590.0 False True 553006.557777407 685212.2140234056 737806.7783482256 559661.0310650247 517338.1948866009 549075.0578575472 649170.8309575331 587669.4700988135 695674.6589782231 683026.9415665758 0.8096409147625175 1.0031993942315331 1.080201575440067 0.8193835367334095 0.7574198957658174 0.8038849193828292 0.9504322471798974 0.8603898826464261 1.0185171574383856 1.0 19.381582960269764 -0.4225535199364354 8.376159432934056 0.9999999997512531 0.8986089158244447 0.07786550662805969 0.10273185560891814 0.0 0.0 0.10236376529842348 0.024127370863434486 0.37796055676191453 0.4225535199364354 -0.1013910839268084 ESYELR ddPTM_BT-474_Trastuzumab_2h_R1 1 ESYELR 6 0 P35268;K7ERI7;K7EMH1 P35268 RPL22 60S ribosomal protein L22 0 111.69 0.064292 645910000.0 929250.0 1105300.0 984640.0 1021500.0 936710.0 1147300.0 1051900.0 948100.0 1249000.0 1065400.0 False True 924247.0212493811 1142089.2423320408 1123268.7533556968 1150821.795263246 1055994.466184849 1067989.851453699 1001015.5783517741 1018852.0363542509 941200.6857425419 997405.2598651688 0.9266514409341722 1.1450603764476144 1.1261909261512641 1.153815647030793 1.0587416255731399 1.0707682167207258 1.0036197106952227 1.0215025700706464 0.9436492102215054 1.0 19.927820285582396 2.2057726253805647 1.3770284410224969 0.9847702347021842 1.0930084942374072 0.3190128471758591 0.06277395392471315 0.49346602899829284 1.812134409918171 0.0380712984023261 0.021519460041715302 160.61001600652543 -2.2057726253805647 0.10823825953522304 ESYPHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESYPHIK 7 0 O60664-4;O60664;O60664-3;K7ER39;K7EL96 O60664-4 PLIN3 Perilipin-3 0 94.887 0.013871 468290000.0 978020.0 1090400.0 1011500.0 925760.0 948470.0 1130000.0 1120300.0 1095700.0 1337900.0 1111600.0 False True 972754.4489882368 1126693.3048392818 1153910.4078843896 1042961.1210796875 1069252.032477869 1051885.7597338804 1066106.8090384 1177466.6978518628 1008192.47194151 1040656.7363113597 0.934750542658471 1.0826752621934506 1.1088290380692303 1.0022143562693842 1.0274781252729561 1.0107903240624014 1.0244557805076522 1.1314650227753584 0.968804060707933 1.0 19.98906283922181 ESYSIYVYK ddPTM_BT-474_Trastuzumab_2h_R1 2 ESYSIYVYK 9 0 Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03 Q16778 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 ; 186.3 9.7364e-05 2901300000.0 1193450.0 1625220.0 1398140.0 1362610.0 1543330.0 1668630.0 1652980.0 1544780.0 2069490.0 1553140.0 False True 1187024.597804761 1679314.465233764 1594985.9591492652 1535116.2862884488 1739863.9274664128 1553281.5356325167 1573019.04240319 1660059.3278338984 1559491.9192452643 1454017.2754899461 0.8163758559228815 1.1549480831772796 1.0969511752271432 1.0557758234139107 1.196590959952761 1.0682689688876787 1.0818434339943759 1.1417053674788866 1.0725401585890906 1.0 20.471612979651567 4.74493590913731 24.9946261042396 1.102955513265844 0.8163757272718043 0.7120722815074442 0.05329930994602229 350.4267914397702 1373827.6016151 0.011635347312476401 0.11021112452881844 55582.22259388721 -4.74493590913731 -0.28657978599403966 ESYSVYVYK ddPTM_BT-474_Trastuzumab_2h_R1 8 ESYSVYVYK 9 0 P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880 P58876;Q99880 HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L 0 ;;;;;;; 205.7 3.3781e-05 19860200000.0 12393350.0 14660130.0 13469180.0 12513370.0 13301350.0 14569870.0 14537790.0 14565260.0 18549270.0 13802450.0 False True 12326625.580630628 15148083.564814277 15365523.467788706 14097561.35897527 14995198.079221785 13562689.180684838 13834541.557949057 15652193.662091656 13978050.955983628 12921565.824128056 0.953957573594795 1.1723102115479465 1.1891378859903434 1.0910102963412773 1.1604784035710052 1.0496165375994628 1.0706551935150328 1.2113232927904742 1.0817613860607225 1.0 23.62327756936928 0.9864359495163632 24.47763128380551 0.9999999909086631 1.1198257036851553 0.1718464539366229 0.07298827532917293 871.840443109311 1573324.383396429 0.06770355213267232 0.016925888003876264 9.69250312085812 -0.9864359495163632 0.11982571277649223 ESYTEEIVS(ph)EAESHVSGISR ddPTM_BT-474_Trastuzumab_2h_R1 4 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR 319.52 8.242799999999997e-67 1011530000.0 351728.0 529043.0 514035.0 601661.0 588098.0 702923.0 567683.0 592059.0 691384.0 649248.0 True False 349834.33552865474 546651.8764417524 586406.6599276841 677831.2209103076 662988.7943700583 654331.5875127594 540222.004530345 636241.448994684 521001.6772709546 607812.4367908215 0.5755629769205433 0.8993759313777954 0.9647822657658054 1.115198011559581 1.0907785926042606 1.0765353716148909 0.8887972207061999 1.0467726727573468 0.8571750851657173 1.0 19.213266669390595 4.782906424136333 1.8743491914056485 1.0128137109388569 0.4050995131344149 0.7262974151752093 0.07939538079821237 0.4766538741146184 1.5841018877431827 0.020638872166853197 0.525509385509031 60660.56123857367 -4.782906424136333 -0.607714197804442 ESYVETELIFALAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ESYVETELIFALAK 14 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 223.31 2.9298e-08 0.0 76031.0 93561.0 90034.0 66699.0 73767.0 108880.0 127170.0 88858.0 112310.0 88796.0 False True 75621.65754383818 96675.1213261812 102710.00461044323 75143.08656119749 83160.79019873579 101353.38187595106 121018.30126342335 95489.03517178126 84632.70537689746 83128.96325791966 0.9096908535862648 1.162953530723493 1.2355501691001551 0.9039338831648263 1.000382862236804 1.2192306736881524 1.455789853747442 1.1486855053817124 1.0180892682892269 1.0 16.34306359864455 2.730808723913639 24.464263536850883 1.198932475954321 1.0522206375501473 0.1292795455188711 0.15233293713860194 804.8147417949917 2539915.0284992387 0.05025641688289814 0.048220100980885375 538.0327648425094 -2.730808723913639 -0.14671183840417368 ET(ph)GEPYRLSPEPTPLAEPILEVEVTLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETGEPYRLSPEPTPLAEPILEVEVTLSK 28 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 ET(0.329)GEPY(0.289)RLS(0.329)PEPT(0.053)PLAEPILEVEVTLSK 98.565 0.0024806 30918000.0 44828.0 37943.0 35248.0 33590.0 37292.0 41683.0 39584.0 41032.0 47210.0 42303.0 True False 44586.651028859 39205.90981797216 40210.612018891734 37842.490555939716 42040.91515299872 38801.55232122768 37669.170694435415 44094.016196274184 35575.72808158959 39603.18632257959 1.1258349433221768 0.9899685721908461 1.0153377986145984 0.955541562936414 1.061553856060043 0.9797583458355507 0.951165150894904 1.113395670669412 0.8983046917441144 1.0 15.27332888831027 4.742539911370405 24.153826692020264 1.0034560398946157 1.125835021386189 0.3112099281981987 0.05696106830374781 307.7843336099275 1868089.6675636135 0.012940028114661946 0.09789462404444954 55276.42042684301 -4.742539911370405 0.12237898149157322 ET(ph)LS(ph)LT(ph)LAEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ETLSLTLAEEK 11 0 H7BZ55 H7BZ55 Putative ciliary rootlet coiled-coil protein-like 3 protein 3 ET(1)LS(1)LT(1)LAEEK;ET(1)LS(1)LT(1)LAEEK 71.085 0.048172 1131220000.0 2343550.0 3599600.0 3859400.0 3225700.0 3494400.0 3417500.0 3283500.0 3460200.0 2625300.0 4168900.0 True False 2330932.5871928805 3719410.5099958475 4402769.973493834 3634073.289261529 3939391.1270685056 3181256.268929672 3124664.5608119094 3718417.694539579 1978329.9922176902 3902837.2328251437 0.5972405324998886 0.9530016980245627 1.1280946938970355 0.9311362663799677 1.0093659796867578 0.8151137439638646 0.8006135983667607 0.9527473150213674 0.5068953364436461 1.0 21.89609186599995 2.7149651087853903 23.542885507971683 0.8227165652887521 0.937152788497014 0.08475354419658321 0.17496516704465645 964.7238363052586 962569.678382771 0.05572993082470805 0.05257930996225076 518.7583602129475 -2.7149651087853903 0.11443622320826186 ET(ph)SSDVALASHILTALR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETSSDVALASHILTALR 17 0 O00273;O00273-2 O00273 DFFA DNA fragmentation factor subunit alpha 1 ET(0.444)S(0.444)S(0.112)DVALASHILTALR 81.357 0.034843 16244000.0 14901.0 12994.0 12323.0 13261.0 12684.0 15256.0 13490.0 14203.0 22120.0 15529.0 True False 14820.774671656745 13426.49743496112 14057.97128656386 14939.841240319032 14299.232216041917 14201.388628761111 12837.437163195575 15262.899981372648 16668.822392814276 14537.92592495422 1.0194559215779893 0.9235497212098638 0.966986030822559 1.0276459872914148 0.9835813093185056 0.976851079175232 0.883030855258399 1.0498677775743799 1.1465749983085547 1.0 13.82753383923197 1.5521233577962197 6.980198131033624 1.0808662328203256 0.9697007260783473 0.42716626296229776 0.05160262076951017 0.10425852825309977 9.656641671781973 0.027004088965344664 0.0125207427057221 35.65523948364359 -1.5521233577962197 -0.11116550674197823 ET(ph)TMSPLLFQAQPLSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETTMSPLLFQAQPLSHR 17 0 Q5VVP1 Q5VVP1 SPATA31A6 Spermatogenesis-associated protein 31A6 1 ET(0.333)T(0.333)MS(0.333)PLLFQAQPLSHR;ET(0.333)T(0.333)MS(0.333)PLLFQAQPLSHR 68.944 0.06683099999999999 1781810000.0 1358670.0 1120410.0 1037200.0 1026230.0 993090.0 1443490.0 1380930.0 1124780.0 1824150.0 1330280.0 True False 1351355.0716824273 1157702.1695478533 1183228.7444959872 1156150.6127782671 1119554.1249944074 1343704.9339099617 1314129.1402351118 1208716.795117111 1374612.674857694 1245380.3914899938 1.085094225761531 0.929597235879681 0.9500942463694588 0.9283513861937631 0.898965595286878 1.078951413633814 1.0552030120394507 0.970560323076054 1.1037693256219367 1.0 20.248155038602334 2.7333346593948535 24.998060438604686 1.0352587519456704 0.9546861630978717 0.3348777622120439 0.058210563324074586 544.6664843783798 2605371.618418983 0.01850667203781509 0.017943294732460726 541.171178939507 -2.7333346593948535 -0.08057258884779872 ETAAVIFLHGLGDTGHSWADALSTIR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETAAVIFLHGLGDTGHSWADALSTIR 26 0 O95372;Q5QPQ3;Q5QPQ2;Q5QPN5;Q5QPN9 O95372 LYPLA2 Acyl-protein thioesterase 2 0 ; 328.64 3.857599999999998e-95 1701220000.0 468560.0 636810.0 631060.0 581910.0 611610.0 593920.0 670740.0 353790.0 654840.0 536260.0 False True 466037.3250219105 658005.8358902254 719907.7627281497 655579.7463354236 689494.9082035169 552863.7083372971 638293.7437243739 380191.6063092185 493463.4564064416 502035.4276847156 0.928295692539427 1.3106760989454733 1.4339780083812343 1.305843592271611 1.373398908087674 1.1012444099552716 1.2714117540828815 0.7573003524125462 0.9829255649988564 1.0 18.9374296504487 1.7515628052406989 24.999999999977536 0.8992179543939061 1.2576803877445262 0.5125281776760955 0.14834403266809446 2.8724247657483817 5531.39863685023 0.06810465880252815 0.03776759256144397 56.43685512696018 -1.7515628052406989 0.3584624333506201 ETAENYLGHTAK ddPTM_BT-474_Trastuzumab_2h_R1 3 ETAENYLGHTAK 12 0 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;; 141.58 0.00030935 266870000.0 743930.0 757370.0 901340.0 560650.0 785410.0 1446720.0 756680.0 581980.0 1297010.0 878380.0 False True 739924.7635383926 782578.6026101663 1028240.837412275 631628.2325152602 885427.3080102082 1346711.6516125638 720076.4976016922 625410.3028345592 977379.264543583 822321.0363810484 0.8998003587439847 0.9516704157955335 1.250412906785723 0.768104188718061 1.0767416481364556 1.6376957319969647 0.8756634766035853 0.7605427505380704 1.188561670323953 1.0 19.649342210404743 ETAIELGYLTAEQFDEWVKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ETAIELGYLTAEQFDEWVKPK 21 1 P07954-2;P07954 P07954-2 FH Fumarate hydratase, mitochondrial 0 ; 249.5 9.946899999999997e-31 689040000.0 560940.0 497910.0 490910.0 396230.0 480700.0 785340.0 565020.0 548370.0 866890.0 630190.0 False True 557919.9613662924 514482.6333570489 560025.860933788 446392.6773736233 541914.2956678773 731051.2942915079 537687.8240139926 589292.1539664383 653256.575230867 589970.7346671969 0.9456739607279261 0.8720477188538328 0.9492434590839479 0.7566352890799471 0.9185443680923796 1.2391314540438938 0.9113805014706413 0.9988498061668408 1.1072694573559987 1.0 19.17028386620338 2.980470362585608 24.99320597648729 1.0395882440038573 0.8792044960120093 0.43014248990938897 0.09405338376431588 753.5206819244321 964325.3372586167 0.027970438315748424 0.030067883540188117 956.0274509291424 -2.980470362585608 -0.16038374799184796 ETAIQTEDSAISES(ph)PEEPLPNLKPKPNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETAIQTEDSAISESPEEPLPNLKPKPNLR 29 2 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 ETAIQTEDSAISES(1)PEEPLPNLKPKPNLR;ETAIQTEDSAISES(1)PEEPLPNLKPKPNLR;ETAIQTEDSAIS(0.009)ES(0.991)PEEPLPNLKPKPNLR 284.86 6.103299999999997e-72 742710000.0 479726.0 500205.0 444406.0 461421.0 497172.0 581249.0 575049.0 566281.0 805530.0 628922.0 True False 477143.20851856907 516854.02104469214 506974.50195380143 519836.8512894392 560483.9072306834 541068.624742972 547231.6829694922 608539.763736653 607017.9250489916 588783.6595127855 0.8103879936365793 0.8778335008012711 0.8610539605893944 0.8828995895021963 0.951935228118389 0.9189599881061621 0.9294274291211184 1.0335540973406354 1.0309693810988145 1.0 19.1673781073348 2.7761418043848116 0.526804377457842 1.0311645789890762 0.8284439733004538 0.8293770032689255 0.02933087664078163 0.3933757352248203 0.22865760265459445 0.026291184180646323 0.033958470885399966 597.2302603824245 -2.7761418043848116 -0.20272060568862238 ETAVPGPLGIEDISPNLS(ph)PDDKSFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 ETAVPGPLGIEDISPNLS(0.99)PDDKS(0.008)FS(0.002)R 192.89 2.2306e-18 129570000.0 79187.0 73014.0 69883.0 68628.0 66472.0 92071.0 90022.0 72221.0 142610.0 94780.0 True False 78760.66599050286 75444.22685210504 79721.918966075 77316.29776341269 74936.81518958841 85706.34848182116 85667.29194256432 77610.4977508071 107465.67637609603 88731.05925475946 0.8876335597929674 0.8502572547397859 0.8984668912514846 0.8713555142109443 0.8445387198008556 0.9659114767890472 0.9654713091680938 0.8746711512591815 1.2111393381154938 1.0 16.437151570766485 1.2533848173520767 24.999764583514064 1.1055696742296608 0.8958018852358746 0.6523466649307372 0.06154617688341397 114.60693540941628 193276.79739789545 0.03956979815617547 0.014319099300710304 17.921931677127834 -1.2533848173520767 -0.20976778899378623 ETCAWFTDNYEQAR ddPTM_BT-474_Trastuzumab_2h_R1 6 ETCAWFTDNYEQAR 14 0 Q13630 Q13630 TSTA3 GDP-L-fucose synthase 0 ;;;;; 308.91 2.6623e-55 2094150000.0 1414191.0 1578217.0 1534149.0 1508669.0 1461540.0 1593797.0 1525417.0 1411955.0 1644900.0 1667098.0 False True 1406577.1527873892 1630746.9987926765 1750143.8441378444 1699666.3407126814 1647658.455773725 1483621.5647845825 1451626.752051171 1517322.2518622144 1239536.4355307517 1560702.378365595 0.9012462416187196 1.044880190738502 1.121382185609685 1.089039373729034 1.0557159895528527 0.9506114588857529 0.9301111936353614 0.9722047412083723 0.7942170478581727 1.0 20.57376401490781 2.6659438845971324 3.967800168844412 0.9289606734901482 1.0498418228897959 0.3723355834613904 0.07346995346216043 0.25257083805340136 7.723087178876844 0.02466766833731974 0.02345306307626495 463.3870414011773 -2.6659438845971324 0.12088114939964767 ETCSTLAES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ETCSTLAESPR 11 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR 198.29 5.6813e-08 2759490000.0 1106940.0 1160430.0 1038800.0 994460.0 1068860.0 1209980.0 1055300.0 959080.0 1150780.0 1094990.0 True False 1100980.3580325944 1199054.2110552515 1185054.0105885363 1120358.5340357202 1204972.9853704334 1126336.9305865483 1004251.1073625109 1030651.4197095602 867185.6886619722 1025106.8007318974 1.0740152706493855 1.169687109869099 1.1560298007411922 1.0929188385403508 1.1754609222279246 1.0987508128737176 0.9796551019323098 1.0054088207918475 0.8459466740858865 1.0 19.96734279403981 2.17737283590719 1.7804593364518908 0.9467221766787811 1.1366619662222612 0.7320638993072424 0.050774751811804124 0.17819940600348885 1.1100553303160885 0.026341916148212553 0.015602693361095873 150.44329470937606 -2.17737283590719 0.18993978954348012 ETDEFFK ddPTM_BT-474_Trastuzumab_2h_R1 3 ETDEFFK 7 0 O14745;O14745-2;J3QRA3 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ;; 134.12 0.007456 349623000.0 462220.0 468220.0 430117.0 360982.0 388604.0 531810.0 530327.0 497850.0 647620.0 530950.0 False True 459731.4588774693 483804.4196550331 490673.73495601665 406682.2841876815 438090.415963636 495047.22644608404 504673.05696412263 535002.0950310765 488022.72866339906 497064.3164308358 0.9248933059177641 0.9733235793890512 0.9871433509435829 0.8181683350514046 0.8813555942002412 0.9959419939873466 1.0153073561745918 1.076323681556247 0.9818100244403788 1.0 18.923073012325887 2.5501777342385012 4.179097608007617 1.0280487724534535 0.918885505134758 0.48570190264442525 0.0497427527154439 0.1987779601049804 6.60175826210166 0.018217743158248107 0.016713152080427975 354.95862569417835 -2.5501777342385012 -0.10916326731869552 ETDEFFKK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETDEFFKK 8 1 O14745;O14745-2;J3QRA3 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ;;; 117.04 0.0034575 4195300000.0 7009490.0 6454710.0 6137050.0 5451070.0 5708100.0 8639700.0 8742650.0 8302640.0 11956810.0 9214330.0 False True 6971751.684667553 6669551.120395414 7001093.295805134 6141174.903089195 6434992.700440635 8042457.874666186 8319734.619333704 8922225.156751653 9010214.38854547 8626263.570615191 0.8082006337502107 0.7731680194788864 0.8116020613668594 0.7119159822578004 0.7459768238894324 0.9323222979254076 0.9644656172661292 1.034309360444844 1.0445095161754834 1.0 23.040304366802825 2.5064543339450847 2.2603803858697256 1.0178670493848723 0.7689594333693781 0.9156582344239896 0.034672584914363855 0.08267352667185834 0.8499804655255059 0.014156814790714933 0.012027887169740403 320.9625294439565 -2.5064543339450847 -0.24890761601549416 ETDKYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETDKYIK 7 1 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 0 60.59 0.08809299999999999 248620000.0 395250.0 435220.0 399970.0 366060.0 387430.0 462700.0 473450.0 408100.0 515690.0 478090.0 False True 393122.01791640354 449706.0346039545 456282.2993984377 412403.1584670223 436766.91402247857 430714.6380786428 450547.4147453628 438554.49428981065 388605.1093919707 447577.8868865577 0.8783320834973323 1.0047548097878576 1.0194478162726708 0.9214109332696977 0.9758456054670565 0.9623233200254394 1.0066346616886321 0.9798395031096921 0.8682401896465136 1.0 18.771779234461622 4.751545725707471 24.225346411475098 0.9721784976576402 0.8783319901268406 0.29064222234657144 0.043366634499574806 1716.1748373907333 3201649.6154869716 0.010017906091588525 0.17762356371514787 56434.63567396495 -4.751545725707471 -0.0938465075307996 ETDLLILFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETDLLILFK 9 0 P05455 P05455 SSB Lupus La protein 0 95.099 0.012822 0.0 132630.0 134360.0 121710.0 117560.0 107730.0 130910.0 143370.0 117270.0 169260.0 141230.0 False True 131915.93481657834 138832.0913776647 138845.71007771528 132443.08394630157 121448.77693426338 121860.499828993 136434.64537341343 126021.28288499397 127548.14096780028 132216.58048691374 0.9977261121923725 1.050035410584573 1.050138413551375 1.001713124470121 0.9185593553168916 0.9216733588194278 1.03190269231715 0.9531428087225947 0.9646909676386956 1.0 17.0125435823438 3.473943925985395 24.684114939104123 0.9642735120018624 1.0329655693278712 0.4434348640724387 0.03421522668497476 71.65767429451228 556691.5744809282 0.009567916420703532 0.013028707288281358 2978.1318825400426 -3.473943925985395 0.0686920573260088 ETDLLLDDSLVSIFGNR ddPTM_BT-474_Trastuzumab_2h_R1 6 ETDLLLDDSLVSIFGNR 17 0 P30044-2;P30044;P30044-3;P30044-4 P30044-2 PRDX5 Peroxiredoxin-5, mitochondrial 0 ;;;;; 381.9 1.2057999999999993e-105 1211002000.0 746178.3 849274.0 836747.0 738527.0 826386.0 852901.0 821493.0 728328.0 930229.0 805486.0 False True 742160.9589410028 877541.5716930259 954553.7044646956 832024.442477121 931621.3587264288 793941.9613829955 781754.2451819874 782679.533734646 700986.5273799838 754079.1938687402 0.9841949824041798 1.1637260102494968 1.265853390765813 1.103364804707698 1.235442333247286 1.0528628396571222 1.036700457376715 1.0379275016449854 0.9295927179526478 1.0 19.524356518623126 2.5394498881213305 5.189725311093562 1.0124430997953113 1.155080256027772 0.4574323582480899 0.07684342801041658 0.20166361833435092 10.963344796846453 0.02539209123248776 0.023474821727600046 346.29792407111574 -2.5394498881213305 0.14263715623246065 ETDLLLDDSLVSIFGNRR ddPTM_BT-474_Trastuzumab_2h_R1 7 ETDLLLDDSLVSIFGNRR 18 1 P30044-2;P30044;P30044-3;P30044-4 P30044-2 PRDX5 Peroxiredoxin-5, mitochondrial 0 ;;;;;; 215.79 1.4942e-18 12592329000.0 1580583.0 2090793.0 2025986.0 2387318.0 1966265.0 2180675.0 2264852.0 1772914.0 2788638.0 2359273.0 False True 1572073.3167472815 2160383.7810939425 2311227.218614005 2689552.2140227715 2216657.192784268 2029930.070006793 2155292.4561851597 1905217.845354876 2101415.5307347574 2208702.177264766 0.7117633753112522 0.9781236254175923 1.0464186808002358 1.217707050641606 1.003601669614576 0.919060111816722 0.9758185048082181 0.862596082426232 0.9514254807033916 1.0 21.074767467261278 2.7463848232716455 20.836467176683954 0.9303843630468879 1.0063940797565576 0.029464637602205856 0.12080820623925449 175.70976747720957 467924.50408247137 0.0390460595846681 0.04053311167409927 557.6796835235126 -2.7463848232716455 0.07600971670966972 ETDLQELFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETDLQELFR 9 0 O75821;K7ENA8;K7ER90;K7EL20;K7EP16 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 ; 183.47 0.000105 96765000.0 134500.0 124059.0 116785.0 117816.0 118925.0 143536.0 120088.0 125230.0 137908.0 132157.0 False True 133775.8669443549 128188.22881975074 133227.3128865829 132731.49352005337 134069.3938262997 133613.69416740027 114278.88465929052 134575.29850505493 103922.42127252408 123722.62711469985 1.0812562751382169 1.0360936540808414 1.0768225343539748 1.0728150267695307 1.0836287343139557 1.0799454981143481 0.9236700458465508 1.0877177574017554 0.8399629372255445 1.0 16.916749847353522 1.9430830514747643 1.1071092817082189 0.9566573469102518 1.0709996710136345 0.36583631956211926 0.06354763639737124 0.5690571364865772 1.2834152991454972 0.04766478889066971 0.02134524710725635 87.71685487556391 -1.9430830514747643 0.11434232410338263 ETDLQELFRPFGS(ph)ISR ddPTM_BT-474_Trastuzumab_2h_R1 4 ETDLQELFRPFGSISR 16 1 O75821;K7ENA8;K7EP16 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 ETDLQELFRPFGS(0.977)IS(0.023)R;ETDLQELFRPFGS(0.999)IS(0.001)R;ETDLQELFRPFGS(0.999)IS(0.001)R;ETDLQELFRPFGS(1)ISR 167.45 3.8292e-09 166918000.0 146123.0 167874.0 150523.0 161379.0 161695.0 165432.0 164756.0 147879.0 174294.0 152900.0 True False 145336.29000379163 173461.58460802402 171715.3300306297 181809.56485343844 182285.89980864877 153996.07522504 156786.12285095998 158914.48189434668 131341.57911994445 143141.791095724 1.0153309448712995 1.2118165022262721 1.199617028096271 1.2701361598294931 1.2734638739202844 1.0758288969715164 1.0953203928132458 1.1101892793005148 0.917562775444885 1.0 17.12708541138205 1.7225951688155823 1.0702612799575069 0.9707577885997248 1.190418620183314 0.49086854848401007 0.08128018100519403 0.41967631783498627 0.8991104349658092 0.07128090918449036 0.02820369034324048 52.79528866905832 -1.7225951688155823 0.21966083158358918 ETDLQELFRPFGSISR ddPTM_BT-474_Trastuzumab_2h_R1 4 ETDLQELFRPFGSISR 16 1 O75821;K7ENA8;K7EP16 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 ;;; 246.03 3.3229e-20 6450346000.0 1158885.0 1468297.0 1326498.0 1465067.0 1401014.0 1493972.0 1369860.0 1345069.0 1697696.0 1533074.0 False True 1152645.6919242286 1517168.3780407207 1513257.3882726931 1650544.331983295 1579424.8284394315 1390697.2320718071 1303594.63842662 1445444.8789019869 1279321.5687609056 1435231.9047893132 0.8031076288632483 1.0570893616411319 1.0543643736061135 1.1500192592399128 1.1004666375997858 0.968970399439355 0.9082815356017208 1.0071159051569252 0.8913692376067305 1.0 20.452852435743118 2.5744982970827577 7.562278172848013 0.9544120791674991 1.0418026549450028 0.15206012881993314 0.09137016255367361 0.511900938916293 35.155690670867244 0.03012205121349125 0.02833335897278271 375.4034824701519 -2.5744982970827577 0.08739057577750364 ETDPVKS(ph)PPLPEHQK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETDPVKSPPLPEHQK 15 1 Q96JM3;A0A2R8Y4S6;S4R3K0;A0A2R8Y735 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 ET(0.022)DPVKS(0.978)PPLPEHQK;ET(0.002)DPVKS(0.998)PPLPEHQK;ETDPVKS(1)PPLPEHQK;ET(0.017)DPVKS(0.983)PPLPEHQK 157.79 1.1404e-06 2414930000.0 2521780.0 1967290.0 1706100.0 1511590.0 1658910.0 2184310.0 2189400.0 2115640.0 3587620.0 2251920.0 True False 2508203.0166760962 2032770.058398084 1946304.0503129608 1702957.139013187 1870162.3553700813 2033313.7910126664 2083490.3576797934 2273519.7998022437 2703499.1226450396 2108200.537634292 1.1897364467474547 0.9642204439806983 0.9232063153237771 0.807777585012929 0.8870894025426422 0.9644783571179336 0.9882790182843672 1.0784172374576206 1.2823728456490953 1.0 21.00758067581063 1.670819982262996 2.8227409361069586 1.149621195518491 0.9482477465869504 0.3052168443377037 0.11165225089277972 0.2515231022470232 4.58782858681043 0.07152239699274857 0.03062913400761773 46.86190963806587 -1.670819982262996 -0.20137344893154052 ETDVVNFDDIASSENLLHLTANRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ETDVVNFDDIASSENLLHLTANRPK 25 1 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 0 ; 232.44 2.6338e-35 393480000.0 358860.0 384270.0 388540.0 352940.0 364420.0 511470.0 453510.0 402060.0 551670.0 489850.0 False True 356927.93763309444 397060.1946538794 443243.0547497788 397622.1678122462 410826.72691343393 476113.2827708733 431571.9887235599 432063.7588193122 415718.3204992703 458587.35361831525 0.7783204984107946 0.8658332845880323 0.966540074104818 0.8670587286695858 0.895852717420043 1.0382172099040152 0.9410900351228604 0.942162393729944 0.9065193735047367 1.0 18.80683704496017 5.942599698344577 0.7036206049925474 0.949781477361935 1.9342124344985775e-13 0.5514695523823689 0.047381128864222834 10.600197648592314 1.0840616137576413 0.017707205098778562 11.786293289597866 876192.8368114444 -5.942599698344577 -0.9497814773617416 ETEAAPTS(ph)PPIVPLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETEAAPTSPPIVPLK 15 0 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A3B3IT55;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5;Q7Z3B3-4 KANSL1 KAT8 regulatory NSL complex subunit 1 1 ETEAAPT(0.028)S(0.972)PPIVPLK;ETEAAPTS(1)PPIVPLK;ETEAAPT(0.005)S(0.995)PPIVPLK;ETEAAPT(0.037)S(0.963)PPIVPLK 224.5 1.1797e-12 500800000.0 1310820.0 1352860.0 1197560.0 1194650.0 1197120.0 1367300.0 1320030.0 1279180.0 1711630.0 1389210.0 True False 1303762.6907657927 1397889.1272788595 1366166.0386218785 1345892.567509775 1349566.1361138527 1272781.7692779948 1256175.1058957046 1374638.9071444233 1289821.7211669385 1300549.4284374819 1.0024706960443412 1.0748450591057692 1.0504529922120918 1.0348646026677892 1.0376892308777999 0.9786492857923532 0.9658803259826196 1.0569678299701033 0.991751403648355 1.0 20.310689800444 2.8838567918223696 6.960103133776113 1.004011025516076 1.0428858302699158 0.34474335507350884 0.028012892839072365 0.33015195209694903 17.84361807130257 0.008930590785667944 0.009496970265219087 765.3441938030091 -2.8838567918223696 0.038874804753839864 ETEAVIHK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEAVIHK 8 0 Q86Y56;H0Y650;E9PGY2;Q86Y56-3 Q86Y56 DNAAF5 Dynein assembly factor 5, axonemal 0 60.973 0.088909 184480000.0 173350.0 179160.0 202230.0 167130.0 173830.0 207570.0 189520.0 174990.0 256450.0 211810.0 False True 172416.70286099543 185123.2322954931 230702.22618532873 188288.64086377504 195966.22012886836 193221.17446722236 180352.19356329326 188048.6423812152 193251.33375394304 198292.10446033574 0.8695086641509917 0.9335885198218933 1.163446355129465 0.949551881433778 0.9882704138029226 0.9744269697126154 0.9095278606989065 0.9483415534521722 0.9745790649601935 1.0 17.59726770831878 2.464359879637559 24.465225328563587 0.9504323751719712 0.9861190887330457 0.014452718675548759 0.07339057360914689 653.3923762944742 1252626.6608535189 0.025990923153363665 0.021758193303605053 291.31300935833707 -2.464359879637559 0.035686713561074446 ETEAWDFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEAWDFLR 9 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 0 87.616 0.031035000000000007 12998000.0 26554.0 36036.0 31604.0 31956.0 26763.0 30475.0 35136.0 25467.0 37865.0 33125.0 False True 26411.036214426746 37235.436475778006 36053.56849310756 36001.62632347749 30171.10941327104 28368.334980433596 33436.33744744549 27367.47685880568 28533.678115005103 31010.934140260717 0.8516685145623512 1.2007196012659347 1.1626082700391833 1.1609333069634133 0.972918431828232 0.9147849223801259 1.0782112301491729 0.8825105601470796 0.9201166912918158 1.0 14.920489364359172 3.1614600809667013 6.811847972380518 0.9554174126638331 1.1061648245632931 0.2826867155252768 0.1026310643856858 0.24971962689111063 17.991393166665535 0.029140439893412882 0.035050659355481656 1450.3074603094094 -3.1614600809667013 0.15074741189946006 ETEDGHESPLFDFIESCLR ddPTM_BT-474_Trastuzumab_2h_R1 5 ETEDGHESPLFDFIESCLR 19 0 Q9UBF2;Q9UBF2-2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 ;;;; 192.55 7.232200000000001e-15 245484600.0 91123.9 159254.4 154819.0 165325.0 153848.0 174101.2 162306.0 152098.0 185061.5 167586.0 False True 90633.29904721696 164555.08643268226 176616.1694891287 186255.12804884577 173439.63087146138 162065.99383414164 154454.6387108689 163448.32509799476 139455.5730220523 156890.518002407 0.5776850009879275 1.0488529742132515 1.1257287676647167 1.1871662508373402 1.105481918727558 1.0329878178594274 0.9844740184266537 1.0417986196940667 0.888871901231869 1.0 17.259398637168093 4.738408573609354 8.435747496927602 1.0524901068045778 0.5747373806767899 0.7638444945892628 0.07807506096651846 0.042424610100492054 46.20485348298968 0.019787537926169253 0.11609076063108102 54753.08242577295 -4.738408573609354 -0.47775272612778785 ETEEILADVLK ddPTM_BT-474_Trastuzumab_2h_R1 3 ETEEILADVLK 11 0 P56537 P56537 EIF6 Eukaryotic translation initiation factor 6 0 ;; 195.36 2.5405000000000003e-07 89982000.0 284773.0 283003.0 257402.0 209684.0 225402.0 291849.0 283578.0 283128.0 367287.0 305187.0 False True 283239.81380925456 292422.58377607405 293641.9642217081 236229.97290061516 254105.60863767625 271674.1655686485 269860.2487668401 304256.4490548525 276774.0402436515 285709.70437626395 0.9913552443995508 1.0234954546415043 1.0277633546356473 0.8268181629193571 0.8893838912206956 0.9508748264667573 0.9445260158592618 1.0649146472608557 0.9687246740459166 1.0 18.124190513923345 1.7646979717660545 24.99999999939501 1.017054147880285 0.9492686708474621 0.17053533644769636 0.06079877251055077 29.23113804564728 27977.31349779384 0.030595485083214535 0.016967949015685165 58.169853731874454 -1.7646979717660545 -0.0677854770328229 ETEELVASR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETEELVASR 9 0 Q8TEV9 Q8TEV9 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 0 ; 76.827 0.034331 1599880000.0 928680.0 1931750.0 1793690.0 1900410.0 1897760.0 1454500.0 1378990.0 1195570.0 753930.0 1388110.0 False True 923680.0900660473 1996047.1309824632 2046225.9609670325 2141001.7111465735 2139428.487095217 1353953.8385247153 1312282.9854466321 1284789.5043814466 568134.0536444159 1299519.6313792402 0.7107857917357531 1.5359884397159635 1.5746018078967212 1.6475331802984996 1.6463225606099872 1.0418879452307324 1.009821593886847 0.9886649446132955 0.4371877422439775 1.0 20.309546997577957 2.544398048228402 3.6740144420432332 0.8857381950444416 1.448928873266994 0.4432286734271923 0.29876356626954786 0.22836250370979838 6.025408486627567 0.10426455886984531 0.0946245185760816 350.26605277253725 -2.544398048228402 0.5631906782225524 ETEFKDDSLPIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEFKDDSLPIKR 13 2 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 0 77.91199999999998 0.01387 447630000.0 530040.0 432260.0 406400.0 386420.0 382200.0 582200.0 588230.0 526090.0 793480.0 590980.0 False True 527186.3235329805 446647.5127933117 463617.5875078758 435340.73237946525 430870.9045231171 541953.8843513846 559775.067643182 565349.5072308904 597937.486087264 553263.1504365668 0.9528672262322013 0.8072966949649055 0.8379693951098066 0.7868601623584514 0.7787811354924454 0.9795589746465885 1.0117700179407878 1.0218455843024907 1.0807469928467959 1.0 19.077606312092826 2.594627006115613 4.18992151970368 1.0258857876246716 0.8296087361735125 0.7824285511343165 0.0494583048756174 0.10515376657897618 3.101705548088483 0.016703780277679783 0.015549008569754334 393.21222001567065 -2.594627006115613 -0.19627705145115915 ETEGGTVLTATTSELEAINKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEGGTVLTATTSELEAINKR 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 280.19 9.372200000000001e-45 164310000.0 76083.0 79352.0 68676.0 69685.0 67183.0 82541.0 85109.0 79323.0 102180.0 81043.0 False True 75673.37758161596 81993.18335070298 78344.983857507 78507.1138550359 75738.3568251612 76835.13495061429 80991.95252204682 85242.48505403241 76999.10814185182 75870.76635559683 0.9973983553420861 1.080695336151096 1.0326109464917466 1.034747869648276 0.9982548017267278 1.0127106742338357 1.0674988063577429 1.1235221304410121 1.0148718912494779 1.0 16.211256489722466 2.2227583813027905 23.47265378819407 1.0685881242966129 1.0279801365091432 0.022395201083026617 0.03937871654623014 195.55823912646665 290478.4091714246 0.01469275987951129 0.010895473635559259 167.01611656129566 -2.2227583813027905 -0.04060798778746966 ETEGSLS(ph)DSDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEGSLSDSDFK 12 0 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 ETEGSLS(1)DSDFK 261.02 2.5362e-21 421590000.0 417300.0 307880.0 292670.0 263330.0 271500.0 414390.0 374900.0 357140.0 505880.0 352000.0 True False 415053.3031663882 318127.59968260967 333875.39206675696 296667.55100016703 306073.91569342307 385744.19466913445 356764.65474292205 383791.6003201741 381212.6524447053 329535.05863763846 1.2595118251827246 0.9653831704517588 1.0131710824549662 0.9002609683675175 0.9288053203164232 1.1705710350330414 1.0826303465793776 1.1646457342257988 1.1568197144810994 1.0 18.330072433545908 2.7295491836744383 24.90925527458654 1.1255311313561989 1.004456239035389 0.19048777334260436 0.10265076371437554 901.7663328610555 2492644.429780326 0.032607816928650564 0.03115680542964737 536.4746235343109 -2.7295491836744383 -0.12107489232080981 ETEGSLS(ph)DSDFKEPPSEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEGSLSDSDFKEPPSEGR 19 1 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 ETEGS(0.172)LS(0.828)DSDFKEPPSEGR 152.07 3.5934e-08 292960000.0 189900.0 165680.0 147220.0 143470.0 141270.0 212400.0 198780.0 200210.0 266860.0 191530.0 True False 188877.59949987332 171194.5586443252 167947.29634082058 161633.2872896895 159259.89712710853 197717.28793581942 189164.25198665808 215150.6868457804 201095.92874079663 179306.39142291728 1.0533790680912267 0.9547599351355007 0.9366498037690982 0.9014362846021284 0.8881997783976004 1.1026784174663224 1.0549777422071351 1.1999052857983168 1.121521252783934 1.0 17.45206738879929 2.7213893530688744 20.84350462074198 1.1121933959687806 0.944228961752108 0.5700548064273762 0.06386273191702521 62.70555881897121 76114.86375729494 0.021130572993370282 0.020006210665324074 526.489062094582 -2.7213893530688744 -0.16796443421667262 ETEHCVSLSLAQLSATIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETEHCVSLSLAQLSATIFR 19 0 Q8TEX9;Q8TEX9-2;H0YN14 Q8TEX9 IPO4 Importin-4 0 150.7 7.2973e-08 421080000.0 98550.0 124510.0 107190.0 132250.0 131920.0 118460.0 133950.0 108160.0 127560.0 137060.0 False True 98019.41774993425 128654.24008211565 122281.42028781795 148992.83644010205 148719.2300489001 110271.13902484535 127470.32676130804 116231.4484253514 96124.54721642807 128312.7134570303 0.7639104115958022 1.0026616740920198 0.9529953579289543 1.1611697112928498 1.1590373708268868 0.8593937113002699 0.9934348929811669 0.9058451442091534 0.7491428138850676 1.0 16.969304596795183 1.87662395062989 1.6514268041373485 0.8711491926334278 1.0011066905491748 0.10657407560675469 0.12694155897152684 0.7477546688588804 3.8308072444850674 0.08938269084066476 0.03961079854318799 75.27035262794534 -1.87662395062989 0.12995749791574696 ETELELR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETELELR 7 0 E7EX90;Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2;Q6AWB1 E7EX90 DCTN1;DKFZp686E0752 Dynactin subunit 1 0 88.94200000000002 0.042427 86361000.0 106930.0 120550.0 123040.0 118030.0 108050.0 143520.0 131310.0 120680.0 144850.0 130860.0 False True 106354.30076103998 124562.43387598623 140362.96251714835 132972.58589811134 121809.5270374749 133598.80020974006 124958.03364708748 129685.75440062334 109153.65839055812 122508.40276511751 0.8681388244441534 1.0167664508271066 1.1457415111864855 1.0854160440982694 0.9942952833285847 1.0905276470372887 1.0199956152123424 1.0585866069061955 0.8909891560649589 1.0 16.902521180495793 1.2525458894426165 24.985729187213376 0.9454945612604448 1.0402820151971077 0.1869352328361703 0.07394101735938062 310.9365109175564 555516.9684589409 0.049470036917659346 0.01786393619889412 17.88734524587146 -1.2525458894426165 0.09478745393666288 ETERAS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETERASPIK 9 1 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 ET(0.008)ERAS(0.992)PIK;ET(0.003)ERAS(0.997)PIK;ET(0.001)ERAS(0.999)PIK;ETERAS(1)PIK 80.312 0.014819 4429500000.0 7841200.0 5874800.0 5452700.0 4831360.0 4817370.0 7325400.0 7079900.0 6880600.0 10088000.0 7507800.0 True False 7798983.850439223 6070339.166608411 6220392.764281975 5443009.6806294955 5430833.514710968 6819012.340136772 6737418.1891555395 7394065.310978854 7601947.572274429 7028645.776249033 1.1095997861769178 0.8636570058945209 0.8850058691678161 0.7744037548488122 0.7726713918437405 0.9701744201108202 0.9585656189877144 1.0519900342630204 1.0815664658991178 1.0 22.744815318352785 2.166538663286891 1.9079631021243497 1.045734168964079 0.8771382264034479 0.34700155412168343 0.0921421244265851 0.36948269391283345 2.649667050612918 0.04965498755921099 0.02977694140547057 146.73667141602976 -2.166538663286891 -0.16859594256063104 ETERAS(ph)PIKMDLAPSK ddPTM_BT-474_Trastuzumab_2h_R1 7 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 ET(0.052)ERAS(0.948)PIKMDLAPSK;ET(0.048)ERAS(0.92)PIKMDLAPS(0.032)K;ET(0.001)ERAS(0.999)PIKMDLAPSK;ET(0.097)ERAS(0.903)PIKMDLAPSK;ET(0.003)ERAS(0.997)PIKMDLAPSK;ET(0.228)ERAS(0.772)PIKMDLAPSK;ET(0.101)ERAS(0.899)PIKMDLAPSK 171.47 3.8668e-09 4968490000.0 7445410.0 5994640.0 5389420.0 5255330.0 5523730.0 8577520.0 8508970.0 7643510.0 14209620.0 9236960.0 True False 7405324.739822823 6194167.968563602 6148203.490321591 5920654.2391588725 6227144.273787236 7984576.231710226 8097358.613678002 8213907.529157329 10707849.550152874 8647449.304640688 0.8563594279585688 0.7163000036599784 0.710984623757451 0.684670592515822 0.7201134177734253 0.9233446708297292 0.9363869423706852 0.9498647797506373 1.2382668198362798 1.0 23.043843220199584 2.171723242448014 1.0801444661881676 1.0813650241293307 0.7307781911633059 0.7333802477852214 0.08514783822403284 0.2647488621206253 0.5832757367375042 0.06131320670027221 0.032662878579470755 148.49890198417984 -2.171723242448014 -0.3505868329660248 ETES(ph)APGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 2 ET(0.002)ES(0.998)APGS(1)PR;ET(0.004)ES(0.996)APGS(1)PR;ET(0.106)ES(0.894)APGS(1)PR;ET(0.005)ES(0.995)APGS(1)PR 128.24 0.00048971 1984634000.0 4167110.0 3575680.0 3017140.0 3581980.0 3343000.0 3411790.0 3088110.0 3190210.0 4477940.0 3634570.0 True False 4144674.742769449 3694694.3472557957 3441927.0865490003 4035458.300731314 3768711.2344866083 3175940.9877897818 2938726.321574191 3428279.66975814 3374411.688321821 3402608.6308880714 1.2180874124473435 1.085841702074179 1.0115553858601325 1.1859895563945804 1.1075946849353007 0.9333841567788154 0.8636686261526327 1.0075445170617134 0.9917131396451871 1.0 21.69820979093346 2.747549479533201 19.398877152461072 0.9557386396013876 1.1172554360248874 0.6103934546981113 0.06485199574200697 22.050077959462694 47585.219741973146 0.020399988632057976 0.021215392459446196 559.1772314707778 -2.747549479533201 0.1615167964234998 ETESAPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 9 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR 183.37 1.7574e-06 11340052000.0 7927411.0 11549154.0 10328800.0 10077368.0 11075762.0 10731921.0 11253546.0 9595387.0 10998042.0 10742486.0 True False 7884730.699994158 11933560.609278979 11783005.260460984 11353161.75554419 12486194.639515366 9990048.561494676 10709168.987259524 10311443.50232791 8287721.915312477 10056891.346375018 0.7840127161000093 1.1866053035941768 1.1716349371426926 1.1288937470360967 1.241556084228352 0.9933535341510441 1.064858773791925 1.0253112166757816 0.8240838674566934 1.0 23.26168109139828 1.499378771245374 3.200373151092618 0.9121019545116975 1.0933785496984392 0.20869672169568554 0.12707386095377673 0.3118149871641586 6.576382652824019 0.08863443052002982 0.032467264080608245 31.57757470472744 -1.499378771245374 0.18127659518674166 ETEWLFGMDEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETEWLFGMDEGR 12 0 Q8N6R0-3;Q8N6R0-4;Q8N6R0;Q8N6R0-1 Q8N6R0-3 METTL13 Methyltransferase-like protein 13 0 ; 173.64 7.5655e-05 64736000.0 93384.0 103250.0 101108.0 102188.0 105041.0 113061.0 94983.0 94619.0 119978.0 108920.0 False True 92881.23091993776 106686.61383405703 115343.12755350974 115124.99032242823 118417.34872321514 105245.35918696655 90388.30941970379 101679.95024554658 90411.02952283328 101968.63234889659 0.9108804225414605 1.0462689493472597 1.1311628379877734 1.12902357980556 1.1613115327274128 1.032134655163936 0.8864324973039799 0.997168912667552 0.8866553119343826 1.0 16.637765892177683 2.4411049196556367 7.049172263331726 0.9471466592577055 1.0818132303225634 0.42090385661715746 0.07356907584733785 0.19167778339122443 28.11176625157754 0.02627094765864906 0.02208926380966233 276.12448549489346 -2.4411049196556367 0.1346665710648579 ETFLTSPEELYR ddPTM_BT-474_Trastuzumab_2h_R1 4 ETFLTSPEELYR 12 0 O95433;O95433-2;G3V438;H0YJ63;H0YJG7 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 ;;; 265.58 2.8633000000000003e-21 698409000.0 1012717.0 1123243.0 1023133.0 1010470.0 1041266.0 1070751.0 1053612.0 995420.0 1335953.0 1141985.0 False True 1007264.6441954353 1160629.4642402683 1167181.233168543 1138395.398394177 1173865.053032885 996732.503646736 1002644.7623712989 1069703.2950403413 1006725.2840030473 1069102.5395974529 0.9421590604159437 1.0856109879575049 1.0917392765786709 1.0648140437705955 1.0979910808881608 0.9323076755780917 0.937837789393731 1.0005619249984334 0.941654562323 1.0 20.0279688005624 2.736345645434987 24.99944884548583 0.9636248517909999 1.0605059816068727 0.5016620495346413 0.046745481350989944 164.1436351153265 1852608.3377428332 0.014667162410374482 0.014446241666030677 544.9361830346438 -2.736345645434987 0.09688112981587282 ETFS(ph)SAEGTVDKDTTIMELR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETFSSAEGTVDKDTTIMELR 20 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 ET(0.001)FS(0.854)S(0.145)AEGTVDKDTTIMELR;ET(0.001)FS(0.883)S(0.116)AEGTVDKDTTIMELR;ET(0.1)FS(0.849)S(0.046)AEGT(0.006)VDKDTTIMELR 185.71 2.1456e-17 373230000.0 375185.0 396288.0 344059.0 363227.0 386928.0 457538.0 407866.0 402222.0 492629.0 504724.0 True False 373165.0456469719 409478.2065188457 392499.51658556174 409211.50095749623 436200.98729806644 425909.47498860175 388135.96338057274 432237.84808193083 371227.1838404021 472512.0822040431 0.789747097907709 0.8665983832811756 0.8306655668035811 0.8660339414999085 0.9231530869293273 0.9013726654394477 0.821430769706679 0.9147657051767815 0.7856459079497071 1.0 18.849991694168402 ETGANLAICQWGFDDEANHLLLQNNLPAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETGANLAICQWGFDDEANHLLLQNNLPAVR 30 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 410.44 5.223499999999996e-175 1290070000.0 610430.0 676060.0 601440.0 654550.0 608400.0 732490.0 658060.0 564160.0 716330.0 677640.0 False True 607143.5127051487 698562.2484130998 686117.5241898054 737415.9628874757 685876.1337306768 681854.6903959911 626227.1237666776 606260.4839464332 539800.0698302287 634392.435043208 0.9570472142590991 1.1011516055760049 1.0815348454511038 1.1623971569541982 1.0811543389289666 1.0748152921299425 0.9871289271033407 0.9556552859983919 0.850892980452176 1.0 19.27501604183633 2.032027255068574 1.9525929615269326 0.926987713419873 1.083567869090511 0.5424268294598537 0.05870114964622221 0.24268356651858614 1.740869585974401 0.03310096657280916 0.017558485713779083 107.65327716004667 -2.032027255068574 0.1565801556706381 ETGEAGWWR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETGEAGWWR 9 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 0 ;; 167.9 0.00013873 629340000.0 516560.0 611750.0 548130.0 596100.0 525180.0 625020.0 650030.0 509920.0 618710.0 593710.0 False True 513778.8983552114 632111.7289393161 625301.939568632 671566.1988804893 592058.5600142613 581813.8385388217 618585.5655442562 547972.8197212945 466237.21078924567 555818.919499296 0.9243638176585354 1.1372619872471195 1.1250101744142305 1.2082463826266712 1.065200444323866 1.0467686833383487 1.1129264295312276 0.9858837122977576 0.8388293281006894 1.0 19.08425541765333 1.568546042685889 3.8973702790744786 0.9166767820172307 1.0935450823557546 0.4357600632785392 0.07848250099038413 0.15256492320066825 5.250686277880905 0.0473965715045284 0.020080619617242425 37.02934607959199 -1.568546042685889 0.17686830033852396 ETGEHLVHVK ddPTM_BT-474_Trastuzumab_2h_R1 5 ETGEHLVHVK 10 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 ;;;; 150.61 1.23e-05 8101890000.0 5378650.0 5588590.0 5095430.0 5025040.0 4911900.0 6558740.0 5880120.0 2440700.0 7686790.0 5249240.0 False True 5349691.946024197 5774602.839776007 5812822.253728482 5661209.548771041 5537401.349887755 6105349.741413261 5595676.131360237 2622837.4276234773 5792483.602208899 4914229.0090995375 1.088612666629562 1.1750780903949205 1.1828553864634808 1.1520036079491496 1.1268097883990158 1.2423820155935263 1.1386681656469169 0.5337230769601587 1.178716659619062 1.0 22.228533659949324 1.9567695440653095 24.753215585789288 0.8483022382835451 1.1633759536734307 0.3404528176242446 0.1565120632353942 344.04565512863934 196995.6067845276 0.06054570296795051 0.039078445928834714 90.52521064629232 -1.9567695440653095 0.3150737153898856 ETGEPYRLS(ph)PEPTPLAEPILEVEVTLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETGEPYRLSPEPTPLAEPILEVEVTLSK 28 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 ET(0.004)GEPYRLS(0.996)PEPTPLAEPILEVEVTLSK;ET(0.155)GEPY(0.015)RLS(0.829)PEPT(0.002)PLAEPILEVEVTLSK;ET(0.046)GEPY(0.173)RLS(0.779)PEPT(0.002)PLAEPILEVEVTLSK;ET(0.001)GEPYRLS(0.999)PEPTPLAEPILEVEVTLSK 170.74 2.1827e-12 4327480000.0 222847.0 208663.0 177429.0 151862.0 177613.0 210905.0 196450.0 205372.0 240249.0 205047.0 True False 221647.21651262903 215608.2218155528 202409.46095948544 171087.7136292384 200230.96275527094 196325.63376696818 186946.96298812237 220697.90149788544 181042.85312166513 191960.72491043116 1.1546487783688544 1.1231892456967723 1.0544316346686524 0.8912641568168066 1.0430829683973046 1.0227385516416114 0.9738813138747615 1.1497034177218441 0.9431244500985276 1.0 17.55045164073186 4.199590531347342 3.562583065793064 1.015758443146382 1.1440206622388216 0.39757624172159756 0.06489234678905131 0.24070057966136565 6.251479200140503 0.01699264458795553 0.04547506755994397 15833.99601660872 -4.199590531347342 0.12826221909243962 ETGLMYSIMVHALR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETGLMYSIMVHALR 14 0 P78527;P78527-2;H0YG84 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 180.84 1.7062e-06 485450000.0 557030.0 779490.0 746680.0 782000.0 606500.0 759950.0 762640.0 616070.0 883200.0 791910.0 False True 554031.012371851 805434.8534383452 851806.0537410951 881001.119819734 683734.1799928598 707416.445229877 725748.1896322804 662044.2717400728 665547.1942736693 741369.6258117392 0.7473074065655607 1.0864146916680864 1.1489627091323535 1.1883426150014031 0.9222581505739822 0.9542020884053805 0.9789289503702628 0.8930016130822575 0.8977265470580204 1.0 19.49983348305431 3.1372674929106066 23.19188806201478 0.9360606391127683 1.0537545310335192 0.1550441829259981 0.11485919520123293 11.796458742273012 2675.839349741088 0.03376553294888129 0.04035755205785964 1371.7263868598925 -3.1372674929106066 0.11769389192075097 ETGLSHLCEFIEDCEFTVLATR ddPTM_BT-474_Trastuzumab_2h_R1 6 ETGLSHLCEFIEDCEFTVLATR 22 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ;;;;; 286.55 3.5489e-46 1106502000.0 638003.0 780044.0 689630.0 748316.0 719596.0 744523.0 679787.0 656167.0 843274.0 719577.0 False True 634568.0627367975 806007.292993444 786723.909628583 843052.7288734314 811232.2852203497 693055.8774286264 646903.1057714775 705133.5134885123 635460.4219926792 673652.9797991363 0.9419806365675206 1.1964725417436317 1.1678474425559005 1.2514644099470995 1.2042287491435657 1.028802511398785 0.960291314920577 1.0467310835599102 0.9433052937465741 1.0 19.3616460788266 2.6251563943936205 4.969616390885233 0.9963882644635458 1.1607273828314628 0.48243033440188465 0.08138141035968517 0.19866072063038423 7.386454602554934 0.026828423285197377 0.02519063387105106 421.848388492675 -2.6251563943936205 0.16433911836791704 ETGQTRS(ph)PS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETGQTRSPSPK 11 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 2 ET(0.014)GQT(0.014)RS(0.973)PS(1)PK 73.156 0.025224 194840000.0 332510.0 307130.0 276480.0 351480.0 335660.0 345040.0 457490.0 393790.0 730090.0 455760.0 True False 330719.8031053343 317352.63638599415 315405.98079275974 395977.3319619434 378404.31138730986 321188.1969367941 435359.46091848396 423176.60942510277 550169.1022047821 426673.00660423335 0.7751130209465024 0.7437841894703199 0.7392217832175145 0.9280580815585502 0.8868719265812477 0.7527736509347938 1.0203585747863066 0.9918054408762406 1.2894396732134952 1.0 18.70277131600454 1.9184705368664057 1.5400460780775365 1.1260239347102743 0.8051809366559465 0.643911626611788 0.0983139052549177 0.2407630805706569 1.0648371867273143 0.06723118672713399 0.030318468848846307 82.88396847441628 -1.9184705368664057 -0.3208429980543278 ETGYVVERPSTTK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETGYVVERPSTTK 13 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ;;; 161.76 3.7946e-05 2019920000.0 1819000.0 1857440.0 1603800.0 1487220.0 1579280.0 1931060.0 1871640.0 1697670.0 2179940.0 1846690.0 False True 1809206.7061099 1919263.7675538089 1829601.099520501 1675501.8995118989 1780391.946874068 1797570.3674262878 1781101.6228408734 1824358.7559935877 1642722.996699439 1728832.6631691484 1.0464903542448214 1.110150107897417 1.0582869808617756 0.9691521540555069 1.029823177687079 1.039759605265171 1.0302336719945526 1.0552546784078738 0.9501920178255653 1.0 20.721366804007552 3.988662757972234 24.049542998663608 1.0179912477155948 1.0797948220570555 0.401313249961896 0.03389484439968389 321.41957594679604 681831.3908859266 0.008424612975733348 0.016412431525739353 9742.328243913511 -3.988662757972234 0.061803574341460665 ETHADLWPAK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETHADLWPAK 10 0 P35606;P35606-2;H0YAC7 P35606 COPB2 Coatomer subunit beta 0 ;;; 128.27 0.00033406 3099180000.0 2772370.0 2783580.0 2700230.0 2277600.0 2324690.0 2885740.0 2818960.0 2562640.0 3821650.0 2991690.0 False True 2757443.8679592637 2876229.777590356 3080398.9131801 2565943.926472413 2620725.4919828544 2686255.586101278 2682596.135327044 2753877.2096222495 2879855.5649863784 2800757.78288533 0.9845349300854412 1.0269469909773044 1.0998448105736172 0.9161605984466773 0.9357201497385444 0.95911742261907 0.9578108295260876 0.9832614681820917 1.0282415646880976 1.0 21.41738578995894 3.7318061108942433 24.999773773970965 0.9665632163771982 1.0360927189256106 0.38581711197923596 0.03953607898597948 545.7933548169808 2020090.5309310579 0.010746915320374428 0.01706761712752443 5392.698138249975 -3.7318061108942433 0.06952950254841239 ETHEALAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETHEALAR 8 0 Q9Y6D9;Q9Y6D9-3 Q9Y6D9 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 0 82.279 0.020684 55529000.0 103890.0 107900.0 95916.0 99472.0 99529.0 116090.0 110570.0 85742.0 120910.0 114390.0 False True 103330.66778326403 111491.38627307261 109420.13908318274 112065.14500090615 112203.42819539881 108064.97154646553 105221.30668158153 92140.50342905396 91113.35061099334 107089.5322657938 0.9648997954982159 1.0411044283614341 1.021763161796285 1.0464621763662483 1.0477534621863176 1.009108633309283 0.9825545452978973 0.8604062552104842 0.8508147218801186 1.0 16.708457941581155 1.9319669970559177 3.6466518521002538 0.8911257265724095 1.0239673223192527 0.5800337295588089 0.04437931337851881 0.141589793409113 3.4502255448743817 0.020513071446307585 0.011703715061535344 85.5001737049444 -1.9319669970559177 0.13284159574684318 ETHEIVALKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETHEIVALKR 10 1 Q00535;Q00535-2 Q00535 CDK5 Cyclin-dependent-like kinase 5 0 119.22 0.00046791 157160000.0 210580.0 237940.0 224630.0 219490.0 221590.0 262420.0 246790.0 218940.0 276900.0 250650.0 False True 209446.26067763753 245859.68906223288 256255.95148103902 247277.41149518342 249808.17303317043 244279.5230702341 234851.82487064734 235278.41455479292 208661.70526990358 234653.30240773875 0.8925775112838561 1.047757208355933 1.092061986137161 1.0537989832570467 1.0645840926589571 1.0410231629545474 1.0008460245855122 1.0026639818857863 0.8892340449883309 1.0 17.840171238803592 1.5711666519830414 2.4631512766799717 0.9458351345413613 1.0349104981482797 0.23027439882819178 0.057266975631892994 0.33597711090590243 4.485866778954075 0.04177768612885472 0.015375595115116563 37.253463168315065 -1.5711666519830414 0.08907536360691848 ETHKPLGDWSYAYMQ ddPTM_BT-474_Trastuzumab_2h_R1 2 ETHKPLGDWSYAYMQ 15 1 P30038-2;P30038;P30038-3 P30038-2 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 0 ; 121.79 0.00010295 766010000.0 653380.0 746140.0 788830.0 632910.0 793950.0 1315720.0 683140.0 564470.0 948170.0 923780.0 False True 649862.2746773422 770974.8188488457 899890.4073667261 713036.3411062752 895054.8263896627 1224767.3732717359 650093.908351773 606593.6177205816 714506.2083270659 864823.569512152 0.7514391346248 0.8914822005646232 1.0405479673436229 0.8244876368349904 1.0349565598617578 1.4162048959449944 0.7517069738495816 0.7014073611138533 0.8261872519618304 1.0 19.7220463166062 ETHPDSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETHPDSLR 8 0 P56597 P56597 NME5 Nucleoside diphosphate kinase homolog 5 0 ;; 83.265 0.018284 1435620000.0 1205470.0 1233410.0 1278670.0 1034670.0 1124140.0 1172540.0 1275220.0 995130.0 1363310.0 1339650.0 False True 1198979.8834603075 1274463.3062379095 1458695.6216011217 1165659.1159128933 1267292.5657002034 1091485.069662268 1213532.7367865292 1069391.6537677508 1027340.5179180674 1254152.390067931 0.9560081318310647 1.0161949347868948 1.1630928052707468 0.9294397755361735 1.0104773357179988 0.8702970056159984 0.9676118679013148 0.852680792411381 0.8191512658700284 1.0 20.258281227701595 2.9753911417581196 1.4080266007921745 0.8914601132822636 1.0345910251812191 0.3421049115945991 0.07649395270481021 0.4161070497422805 1.7037707134782494 0.028966806277890594 0.03394907978392726 944.9115156139039 -2.9753911417581196 0.14313091189895555 ETHQQVVSR ddPTM_BT-474_Trastuzumab_2h_R1 6 ETHQQVVSR 9 0 O14745;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ;;;;; 131.09 0.00034297 4999980000.0 2384880.0 2717490.0 2582450.0 2762570.0 2605170.0 3114380.0 2805360.0 2376230.0 3093710.0 2943490.0 False True 2372040.0710650766 2807940.0118926074 2946036.51294221 3112311.078747316 2936922.9574476485 2899090.241061945 2669654.0192840886 2553556.348851449 2331306.6240901216 2755633.9481514273 0.8607965047956828 1.0189814992576458 1.069095739264829 1.1294355989608706 1.0657884946648433 1.052059270429134 0.9687984941087633 0.926667473582426 0.8460146260188299 1.0 21.393952825921914 2.0025077228934767 2.7055066281184366 0.9169725890064584 1.0395588543922762 0.30175464470573776 0.07378863364323036 0.32533374537363025 4.529989698798073 0.03855466268434469 0.021997980340705003 100.5790948440339 -2.0025077228934767 0.12258626538581785 ETHVMDYR ddPTM_BT-474_Trastuzumab_2h_R1 10 ETHVMDYR 8 0 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 ;;;;;;;;; 154.49 0.0004242 10215092000.0 6424077.0 7904654.0 7703447.0 7222719.0 5648102.0 6780061.0 7483976.0 5829892.0 9130814.0 7195762.0 False True 6389490.483214054 8167755.629925744 8788025.378038337 8137114.484837946 6367354.310776627 6311371.341616849 7121947.489315319 6264948.144631731 6880647.236339152 6736522.308558212 0.94848501801838 1.2124587815213297 1.304534443072185 1.2079102706303508 0.9451990239366407 0.9368886574603572 1.057214266219746 0.9299973870304885 1.0213945595634473 1.0 22.683572569776267 3.239637072527503 24.997259372762517 0.978172042513785 1.1812256509744836 0.4941162798331681 0.09206819111328625 22.73703234873592 527983.8078727402 0.026249894855588405 0.03361704687818897 1736.3492049434496 -3.239637072527503 0.20305360846069864 ETIEDVEEMLNNLPGVTSVHSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETIEDVEEMLNNLPGVTSVHSR 22 0 Q9UNM6;J3KNQ3;A0A087WUL9;Q9UNM6-2;H0YD73;E9PL38 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ;; 251.41 2.1857000000000002e-32 547832000.0 327291.0 504101.0 535683.0 568367.0 555765.0 583569.0 605010.0 531133.0 553569.0 574952.0 False True 325528.9016214488 520879.6970495108 611102.5101598945 640322.2039240187 626538.3784727647 543228.2486036639 575743.354937357 570768.8414987248 417149.33739456657 538258.0711188278 0.6047822022339613 0.9677136767625348 1.1353336678995851 1.1896193262704626 1.1640111167686473 1.0092338187786112 1.0696418425098801 1.060399968201721 0.7749987594751276 1.0 19.037938522040292 4.709364262494149 3.2081154286451428 1.0607760122909815 0.5536763098686972 0.5913849747112205 0.11026670377787295 0.20602178244542851 3.4374765249138415 0.027241559552057586 0.2507741204090642 51211.11863533208 -4.709364262494149 -0.5070997024222843 ETIELVHTEPTDVAQLPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETIELVHTEPTDVAQLPSR 19 0 Q6IBS0;H0Y858;D6RG15 Q6IBS0 TWF2 Twinfilin-2 0 128.32 2.169e-05 256250000.0 119700.0 130580.0 115280.0 105920.0 103690.0 143950.0 128330.0 125110.0 167820.0 156300.0 False True 119055.5484999202 134926.27636272326 131510.42196827722 119329.46113977766 116894.30688121951 133999.07532185141 122122.18763179312 134446.3434957074 126463.00967278906 146324.80018483766 0.8136388934037777 0.9221012172392119 0.8987568874322952 0.815510842926425 0.7988687271983866 0.9157646219409398 0.8345966471680004 0.9188213025124561 0.8642623090073647 1.0 17.15881478302091 0.028547694914709463 0.542882806671728 1.0106147155195184 0.8589156171008854 0.461373384399429 0.04448096370364437 3.6586621068462404 1.3195641935385598 0.1301421396492169 0.020064401793294998 1.0679420692055683 -0.028547694914709463 -0.15169909841863305 ETIFELEDEVEQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETIFELEDEVEQHR 14 0 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 0 ; 162.97 4.3544e-06 79731000.0 134828.0 141406.0 123860.0 128620.0 131154.0 136773.0 139041.0 123419.0 147580.0 133783.0 False True 134102.10102879902 146112.61322826782 141298.4113895805 144903.27881229421 147855.6844893378 127318.20443901065 132315.05564179947 132629.1524889834 111210.88647068392 125244.85440261113 1.0707194452693078 1.1666156979078386 1.1281773775341197 1.1569599366253345 1.1805330062825738 1.0165543730022994 1.056451031644466 1.0589588939329577 0.887947748441515 1.0 16.93439180695647 2.0236315918015384 0.9431332748803926 0.9657620045914526 1.1396493337905946 0.614274548815043 0.05330041207128554 0.38069593139672114 0.6249220951205483 0.04287906871920216 0.020881490387939267 105.5921400327589 -2.0236315918015384 0.17388732919914207 ETKPEPMEEDLPENK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETKPEPMEEDLPENK 15 1 P31948;P31948-2;P31948-3;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 209.67 2.0685e-09 1168590000.0 1501260.0 1081210.0 986600.0 892310.0 958210.0 1488110.0 1371590.0 1355310.0 2223780.0 1459690.0 False True 1493177.3829656644 1117197.4212447535 1125504.7043190717 1005276.3545093932 1080232.3637443646 1385240.4583341442 1305240.951717377 1456450.1143247325 1675759.2161253414 1366531.3344965193 1.0926770175495508 0.8175424836901896 0.8236215854748397 0.7356409100416086 0.7904922020264996 1.0136909585351865 0.9551489371433082 1.065800744965239 1.2262867113418612 1.0 20.382087110491145 2.1541461746109243 1.3886710389896928 1.1049579636566877 0.848115606967314 0.45774104967581675 0.10960706856969556 0.37124704810182185 1.3699480851771744 0.07002479987119928 0.0377729137603396 142.60875046244234 -2.1541461746109243 -0.2568423566893737 ETKPEPMEEDLPENKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ETKPEPMEEDLPENKK 16 2 P31948;P31948-2;P31948-3;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 187.35 7.6099e-10 4493700000.0 2832700.0 1951660.0 1666840.0 1364760.0 1447330.0 2359260.0 2365680.0 2052960.0 3959400.0 2056550.0 False True 2817449.05794256 2016619.8232966159 1901516.5835669967 1537538.4760680054 1631638.8965029917 2196169.9093006677 2251243.0206247945 2206162.2999196495 2983658.9232418095 1925299.218298962 1.463382434877748 1.0474319025997099 0.9876473046340414 0.7985971538628939 0.8474728920030286 1.1406901786627353 1.1692951408424763 1.1458802242016362 1.5497118031751593 1.0 20.87665124744845 2.182497317753419 1.8988088909232592 1.2408852299289732 1.0178482872895311 0.14163794295692034 0.21139077740889115 0.6380365177813783 4.553526069699368 0.11222505999913299 0.06827191838547789 152.22897310362663 -2.182497317753419 -0.22303694263944207 ETLEQQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETLEQQKR 8 1 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 112.41 0.0048844 1251320000.0 943750.0 1034640.0 982540.0 944780.0 938490.0 1136200.0 1088940.0 973300.0 1580210.0 1293610.0 False True 938668.9548604811 1069077.3669469128 1120873.0916092237 1064389.0511295255 1058001.1386339627 1057657.1683271097 1036263.8120452323 1045932.5883172571 1190788.4192291603 1211050.7022847605 0.7750864213113409 0.882768462897547 0.9255377082847083 0.8788971833478614 0.8736224970911164 0.8733384707442392 0.8556733504965759 0.8636571419710235 0.9832688400102708 1.0 20.20782783601087 1.2144330036777662 6.016018296179121 0.995174297460939 0.8685473869910274 0.6663130228530847 0.03553726111965831 0.1022104953244943 11.35446765556453 0.031227472714312903 0.00858481725659182 16.384492868465028 -1.2144330036777662 -0.1266269104699116 ETLIAEIEELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETLIAEIEELDR 12 0 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 ; 221.59 6.2425e-11 98347000.0 95835.0 111887.0 92404.0 91562.0 96477.0 102364.0 96486.0 88822.0 107463.0 97484.0 False True 95319.03500826945 115611.09115788012 105413.68001003386 103153.73981193667 108762.77408601985 95287.81761893694 91818.60356768635 95450.34866897698 80980.18358042488 91262.48765974861 1.0444492304838846 1.266797499416296 1.1550603398303665 1.1302972607597754 1.1917577185876969 1.0441071689191275 1.0060935869950323 1.0458880873907563 0.8873326342181361 1.0 16.47773435927503 2.5721793006520777 3.191529022190988 0.9963067642677826 1.1621671834772442 0.6150792050303417 0.06452545212956975 0.17317398958641697 3.3773646506478836 0.021706901488285617 0.019803510848956523 373.4042878073259 -2.5721793006520777 0.1658604192094616 ETLIDVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETLIDVAR 8 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ; 97.093 0.019719 251340000.0 617830.0 692930.0 615560.0 600560.0 610310.0 651500.0 654040.0 601940.0 701710.0 690420.0 False True 614503.6719273655 715993.7561649694 702225.4974565655 676590.8344231955 688029.3609092203 606463.3384660382 622401.5865245685 646859.8193893858 528782.9729322657 646356.8045016992 0.9507189645835159 1.1077376321843722 1.0864363035489935 1.0467760681266516 1.0644729909506376 0.9382794986332412 0.962938089596506 1.0007782309773536 0.8180976346956298 1.0 19.301971261614593 2.739774743045756 24.99993970124776 0.9503685017012334 1.0560764410396746 0.43009991772070144 0.06136118090815656 106.29004619333858 2188633.2860759343 0.0186498711208948 0.018782858684090468 549.2559155828973 -2.739774743045756 0.10570793933844114 ETLLNGVGYLHEGLSPMER ddPTM_BT-474_Trastuzumab_2h_R1 4 ETLLNGVGYLHEGLSPMER 19 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;; 241.68 2.2522999999999998e-24 1163700000.0 477980.0 532281.0 497243.0 554061.0 569905.0 553411.0 562997.0 511239.0 639320.0 609496.0 False True 475406.6087885704 549997.651314341 567250.4922863648 624205.0657908455 642479.0236584175 515155.00015936844 535762.6842526032 549390.2501990409 481768.15244909644 570597.4434642219 0.8331733943676173 0.9638978541074158 0.9941343039367 1.0939499868789457 1.1259759941400838 0.9028343993827763 0.9389503762930846 0.9628333538677855 0.8443223115830604 1.0 19.122113757441703 -0.5359443843781856 7.684159921327407 1.0000002211466812 0.9687921503118814 0.01105327498235087 0.08955393629362383 0.0 0.0 0.08941361929850968 0.021074992178802855 0.291108988750042 0.5359443843781856 -0.031208070834799817 ETLPLLLQHLWQVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETLPLLLQHLWQVNR 15 0 Q96T76-5;Q96T76;Q96T76-8;Q96T76-9;H0Y746 Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog 0 ; 198.23 8.028800000000001e-09 178143000.0 183411.0 230121.0 202088.0 219020.0 228160.0 229250.0 230170.0 202818.0 295390.0 243850.0 False True 182423.53555487792 237780.4383739178 230540.23381961486 246747.90954337362 257214.82358972926 213402.48709645288 219035.79776521315 217953.30904893577 222595.09252321 228287.28422951174 0.799096349893391 1.0415842440653067 1.009868922825496 1.0808657625244786 1.1267155087408847 0.9347979578306507 0.9594743680292 0.9547325852359496 0.9750656646272992 1.0 17.800490977057116 4.744509396928472 24.772776462104215 1.0066943012525371 0.7990962467431165 0.5514582481900966 0.056813639415034 507.3810513798235 2112842.1862606937 0.015065677803246197 0.13746425090473752 55527.66316363423 -4.744509396928472 -0.2075980545094206 ETLQQHK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETLQQHK 7 0 P14625 P14625 HSP90B1 Endoplasmin 0 ;;; 127.31 0.0038676 3550980000.0 4986160.0 5943600.0 6035700.0 4383650.0 3722340.0 4259200.0 6041200.0 4697050.0 8771000.0 5021010.0 False True 4959315.068574451 6141429.133017922 6885474.0967551265 4938619.640534239 4196357.934962271 3964771.529078353 5748964.076374881 5047567.7221366195 6609504.575378568 4700564.84309707 1.0550466239940002 1.3065300316060542 1.4648184476949968 1.0506438705524421 0.8927348255018238 0.8434670430939266 1.223036862222509 1.0738215279700127 1.4061085839683367 1.0 22.164402697895742 3.6992371948514906 24.48922404036232 1.066336454986286 1.2785716267090759 0.22222101201442823 0.17605233078728286 601.9260254272024 374857.9568929835 0.048259394548079 0.07476483697310293 5003.0770909501525 -3.6992371948514906 0.21223517172278994 ETLVYLTHLDYVDTER ddPTM_BT-474_Trastuzumab_2h_R1 6 ETLVYLTHLDYVDTER 16 0 O14980 O14980 XPO1 Exportin-1 0 ;;;;; 264.3 5.2914999999999996e-27 4352910000.0 1850510.0 2321420.0 2065190.0 2234710.0 2043320.0 2196340.0 2206860.0 1902680.0 2393330.0 2329780.0 False True 1840547.0597709913 2398687.061371979 2355950.8010467254 2517624.056870024 2303524.690293504 2044512.1854282357 2100105.750776112 2044667.6432132702 1803525.8904789418 2181091.445774994 0.8438651498708717 1.0997645541265548 1.0801705749708261 1.1542955073006818 1.0561339345746719 0.9373803145157775 0.9628691886551756 0.9374515897414613 0.8268914602239917 1.0 21.05661882788624 2.7333917769113416 6.2669358727532885 0.9319385124987133 1.0578822774511285 0.3009367507744587 0.08602961392043357 0.17930650353377078 35.035849538317166 0.027198672117757842 0.02697298000718359 541.2423573397543 -2.7333917769113416 0.12594376495241522 ETMQSLNDR ddPTM_BT-474_Trastuzumab_2h_R1 8 ETMQSLNDR 9 0 P05783;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;Q92764 P05783 KRT18;KRT35 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5 0 ;;;;;;; 278.65 6.082200000000001e-21 21051530000.0 5776261.0 6715328.0 6438254.0 6648829.0 6049040.0 6647618.0 6599098.0 5818297.0 7469700.0 6576174.0 False True 5745162.252578922 6938843.632978501 7344704.200893041 7490570.069680201 6819349.388530918 6188083.814469573 6279874.418737545 6252487.866853522 5628892.523851931 6156476.945174182 0.9331899240006618 1.1270802595009448 1.193004418972163 1.2166974937755206 1.107670742416462 1.005133921490629 1.020043520776942 1.0155951078083059 0.9143041668115393 1.0 22.55367357158544 2.7542982929881865 4.0833210047746045 0.9951526563388492 1.1276404648978748 0.39929278170599414 0.07595936886626724 0.2292272469725085 9.099382602190255 0.025441956949282234 0.02580146650546233 567.9345544781579 -2.7542982929881865 0.13248780855902564 ETNPHHPPAWIASAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETNPHHPPAWIASAR 15 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 94.882 0.0024866 1138640000.0 258130.0 322060.0 300950.0 323070.0 335390.0 299490.0 315500.0 214843.0 325220.0 274760.0 False True 256740.25676093923 332779.572410619 343321.1440957068 363970.6288748862 378099.9284877248 278786.9612236278 300238.05967295804 230875.6756106487 245073.88872473154 257224.58156612923 0.9981171130603415 1.2937316114364659 1.3347135876570304 1.414991625834617 1.4699214444655244 1.0838270569873787 1.1672214912157242 0.8975645881312998 0.9527623185645113 1.0 17.972668994275924 2.1724293676093236 1.7193271045839842 0.9481723605149768 1.3023893813763263 0.5354468155103962 0.1326800778089379 0.27435581712571516 1.5864442225536648 0.07517006271650398 0.0438037088926074 148.7405447113535 -2.1724293676093236 0.35421702086134954 ETPCWIEIHLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETPCWIEIHLHR 12 0 K7EIU8;Q13485 K7EIU8 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 0 ; 161.99 3.4414e-05 312740000.0 82657.0 86727.0 70619.0 86569.0 92765.0 97330.0 99593.0 37455.0 109994.0 74743.0 False True 82211.98389605606 89613.65576742149 80561.54136864834 97528.6265238805 104578.07288876774 90601.80619017572 94775.30610779359 40250.08229263622 82887.45254408741 69972.83774929837 1.1749128167505314 1.2806920320781197 1.1513259138822927 1.393806935104021 1.4945524042265437 1.2948139464457291 1.3544585178517203 0.5752243811641014 1.1845661146552333 1.0 16.094507380903742 1.763343665727978 24.99999999999999 0.8819505089919705 1.3095725652242456 0.5184888700661172 0.16945434213222302 10.032854127382913 10127.702050635311 0.07552552609415966 0.04188515325662999 57.98873911639891 -1.763343665727978 0.4276220562322751 ETPEHPLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETPEHPLK 8 0 Q8N163-2;Q8N163;H0YB24;G3V119;E5RHJ4 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 ;;; 89.355 0.013965 2577520000.0 5404800.0 5817900.0 5305500.0 4863680.0 4910600.0 6277200.0 6069300.0 5634200.0 7526100.0 6127300.0 False True 5375701.157329727 6011545.284505181 6052468.283767315 5479421.389315653 5535935.802593461 5843271.938939381 5775704.77202245 6054652.6138879005 5671393.499573221 5736250.468154549 0.9371454728438982 1.0479921192212514 1.0551262218008586 0.9552270110475978 0.9650791633536302 1.0186570428503732 1.006878065050844 1.055507015863585 0.9886934908192402 1.0 22.451676588704885 2.525417189902057 24.92846105610077 1.020061135827155 0.9961895695069367 0.057627316649186744 0.038865935147542975 1073.5151749991292 554104.0790679216 0.013008585537422125 0.012264312095795262 335.28736666619403 -2.525417189902057 -0.02387156632021825 ETPHS(ph)PGVEDAPIAK ddPTM_BT-474_Trastuzumab_2h_R1 14 ETPHSPGVEDAPIAK 15 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 ET(0.001)PHS(0.999)PGVEDAPIAK;ET(0.004)PHS(0.996)PGVEDAPIAK;ET(0.002)PHS(0.998)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ET(0.129)PHS(0.871)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ET(0.001)PHS(0.999)PGVEDAPIAK;ET(0.042)PHS(0.958)PGVEDAPIAK;ET(0.033)PHS(0.967)PGVEDAPIAK;ET(0.017)PHS(0.983)PGVEDAPIAK;ET(0.12)PHS(0.88)PGVEDAPIAK;ET(0.044)PHS(0.956)PGVEDAPIAK;ET(0.021)PHS(0.979)PGVEDAPIAK 425.98 3.019499999999998e-153 121906190000.0 40375303.0 38486402.0 34586856.0 33079074.0 33766582.0 41570881.0 42115410.0 37819391.0 49059523.0 39563660.0 True False 40157926.85476586 39767398.625048675 39456384.690458424 37266881.37672613 38066556.06748826 38697183.843797974 40078126.72181014 40641665.999396235 36969460.92057806 37038673.34664657 1.0842161240205896 1.0736723276469393 1.065275322395713 1.0061613446017288 1.0277516073867359 1.0447778051235619 1.0820616156177407 1.0972765039133312 0.9981313470539092 1.0 25.142529089200327 3.9896355489087454 23.08460933034276 1.0456689441546088 1.0765766591279926 0.1978642685538351 0.032066671844851256 377.13575955859807 840008.0754874796 0.00887817575206838 0.01747449767557244 9764.174873668895 -3.9896355489087454 0.03090771497338385 ETPKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETPKPR 6 1 A0A0A6YYC7;Q96JP5-2;Q96JP5;H3BTR0 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 0 ;; 102.98 0.03199 248883000.0 342140.0 359590.0 310703.0 308351.0 326912.0 279184.0 387050.0 363880.0 493300.0 419360.0 False True 340297.9562553274 371558.73577325454 354447.2817211111 347388.20498405973 368542.3054407676 259884.6672084453 368326.912825415 391034.5733452001 371732.82488134224 392596.085767841 0.8667889685903802 0.9464147739694309 0.9028293825902051 0.8848488754151393 0.9387314820522753 0.6619644887700848 0.9381828453664782 0.9960225980868176 0.9468582045445146 1.0 18.582686263462303 2.0097371904655708 24.998299315677617 0.9771644741165593 0.8699044185461484 0.32087324312983967 0.07546036687417508 252.81114049359644 649039.4538537506 0.028596320602123766 0.021095587462781274 102.26739427375908 -2.0097371904655708 -0.10726005557041085 ETPPNGNLS(ph)PAPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ETPPNGNLSPAPR 13 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 ETPPNGNLS(1)PAPR;ETPPNGNLS(1)PAPR;ETPPNGNLS(1)PAPR 196.05 1.5202e-07 2096150000.0 708520.0 799980.0 701310.0 690270.0 762240.0 791430.0 754700.0 689200.0 849270.0 740180.0 True False 704705.407043973 826606.8507018778 800048.3521042045 777658.1112250221 859306.7458495586 736720.3069258274 718192.2777660264 740631.6036866872 639978.7881349622 692941.0787000199 1.016977386253422 1.1928963026013977 1.1545690920866192 1.122257194917545 1.2400863107461404 1.0631788611925546 1.036440614999155 1.068823347976622 0.9235688398436175 1.0 19.40237315857243 1.9883844644742823 1.1692425068690595 0.9824479908875796 1.1448116494495884 0.501402499339145 0.06426491585088069 0.3952195469959808 0.9979257743172687 0.04752666965919726 0.02190652490337609 97.36087413706926 -1.9883844644742823 0.16236365856200874 ETPQGELRPEVVEDEVPRS(ph)PVAEEPGGGGSSSSEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETPQGELRPEVVEDEVPRSPVAEEPGGGGSSSSEAK 36 2 Q7L8J4 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 ETPQGELRPEVVEDEVPRS(1)PVAEEPGGGGSSSSEAK 301.87 1.2436999999999992e-92 883700000.0 564160.0 489490.0 483400.0 418240.0 432970.0 639410.0 547740.0 517480.0 684250.0 569180.0 True False 561122.6252440683 505782.3787470469 551458.5182118784 471189.14111688634 488106.1630857516 595209.0917092387 521243.7236300034 556096.9853101966 515625.7559802512 532854.4451004859 1.0530504726074896 0.9491942563257895 1.0349139868916437 0.8842736425479744 0.9160215656898655 1.1170200364885647 0.9782103319635572 1.0436189290028868 0.967667175757564 1.0 19.023381973631796 2.7772993570397992 24.999450499013772 1.0219952611863419 0.965596884673891 0.16458677917928932 0.06053344339909027 967.5011422724687 624360.4998700698 0.01805335990197146 0.01914819286862881 598.8242194086649 -2.7772993570397992 -0.05639837651245083 ETQS(ph)PEQVK ddPTM_BT-474_Trastuzumab_2h_R1 9 ETQSPEQVK 9 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ET(0.006)QS(0.994)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK 232.39 1.9302e-08 36151398000.0 30004340.0 25600720.0 23749649.0 21884891.0 24836910.0 28785310.0 29851550.0 29339400.0 37140390.0 29928380.0 True False 29842799.967235528 26452824.48923795 27093393.143550307 24655515.956691563 27999743.26860091 26795449.273031194 28407516.48250487 31528855.01045447 27987638.54022856 28018325.16542477 1.0651171970857916 0.9441258295439199 0.9669883186659618 0.8799782217931075 0.9993367948757055 0.956354425713403 1.0138905989127562 1.1252940646631429 0.9989047658982101 1.0 24.73986738344377 2.0198429907517905 5.835993555071325 1.0589025184023217 0.9659210014973726 0.24708763620564433 0.05515575617541093 0.17029588323497993 19.32625022148041 0.021215785162059145 0.014908137687156561 104.67500510692338 -2.0198429907517905 -0.09298151690494916 ETQS(ph)PEQVKSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETQSPEQVKSEK 12 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 ETQS(1)PEQVKSEK;ETQS(1)PEQVKSEK;ETQS(1)PEQVKSEK;ET(0.001)QS(0.999)PEQVKSEK 225.31 4.7333e-11 3328020000.0 1485190.0 1464180.0 1487640.0 1598700.0 1691640.0 2031220.0 2236460.0 1902650.0 3574070.0 2277840.0 True False 1477193.902060123 1512914.3461845005 1697086.7812013181 1801095.2560815974 1907060.3268641725 1890806.5423775688 2128273.885693132 2044635.4044609373 2693288.338584342 2132466.301043063 0.692716176259187 0.7094669423120459 0.7958328721871076 0.8446066675007335 0.8942979900462499 0.8866759308002711 0.9980340062828283 0.9588125277575713 1.262992215758327 1.0 21.024091512414188 3.0262740777312707 0.4939812700895074 1.092714843751235 0.6615432177762821 0.7487934386780244 0.07893669405770229 0.5820555188649665 0.2867809539815173 0.06611077879444757 0.11571528182802607 1062.3657912454348 -3.0262740777312707 -0.43117162597495295 ETSDCSYLFEWR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETSDCSYLFEWR 12 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 ; 228.64 2.3455e-11 162690000.0 112356.0 145787.0 116520.0 124866.0 135043.0 128764.0 126879.0 130193.0 133593.0 117877.0 False True 111751.08777992516 150639.43216489736 132925.003190004 140674.02279720065 152239.92558742897 119862.84775785245 120741.37804515124 139908.66276665832 100670.79520448622 110353.98894042303 1.0126601571263218 1.365056520487205 1.2045328353446871 1.2747524955635863 1.3795597879984107 1.0861668790474168 1.0941278988142065 1.2678169961050616 0.9122533419144051 1.0 16.751779253764862 1.2374767265476339 24.999997841841118 0.956126570833744 1.2158439651649726 0.43895188141561925 0.11494825318325269 25.119881047942908 579260.9517738555 0.08872857887117111 0.026971920929615242 17.277333903418036 -1.2374767265476339 0.25971739433122865 ETSFGS(ph)SENITMTSLSK ddPTM_BT-474_Trastuzumab_2h_R1 13 ETSFGSSENITMTSLSK 17 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;A0A087WZS7;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 ETSFGS(0.99)S(0.01)ENITMTSLSK;ETSFGS(0.94)S(0.06)ENITMTSLSK;ETSFGS(0.682)S(0.318)ENITMTSLSK;ETSFGS(0.989)S(0.011)ENITMTSLSK;ETSFGS(0.942)S(0.058)ENITMTSLSK;ETSFGS(0.93)S(0.07)ENITMTSLSK;ETSFGS(0.995)S(0.005)ENITMTSLSK;ETS(0.001)FGS(0.966)S(0.033)ENITMTSLSK;ETSFGS(0.5)S(0.5)ENITMTSLSK;ETSFGS(0.852)S(0.148)ENITMTSLSK;ETS(0.001)FGS(0.982)S(0.018)ENITMTSLSK;ETSFGS(0.499)S(0.499)ENIT(0.002)MTSLSK;ETSFGS(0.999)S(0.001)ENITMTSLSK 469.88 1.7073999999999982e-206 12278920000.0 8635042.0 8207768.0 7663997.0 7028297.0 7526049.0 9274937.0 9134504.0 9062485.0 11199396.0 9518347.0 True False 8588551.893315367 8480958.59617948 8743021.16094388 7918078.679572483 8484446.729762712 8633782.436043255 8692633.144326057 9738773.649066381 8439454.92001784 8910877.94539314 0.9638278008011082 0.9517534240903922 0.981162710848706 0.8885856958310233 0.9521448707699011 0.9689036803053575 0.9755080473097588 1.0929084326759584 0.947095782451041 1.0 23.087136149788147 1.9767186231771394 13.969051088408403 1.026299423499137 0.9515460677933077 0.30312583481448474 0.04085990955026773 2.900940841774028 1738.8293260012406 0.016246611377097812 0.01067630600895685 94.78041876094963 -1.9767186231771394 -0.0747533557058292 ETSMVHELNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETSMVHELNR 10 0 B4DR61;P61619-3;P61619 B4DR61 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 0 152.54 1.7849e-05 273960000.0 128940.0 242960.0 269630.0 184370.0 265220.0 306850.0 216760.0 172670.0 295460.0 250410.0 False True 128245.80136658088 251046.77672757834 307591.56033402716 207711.22309611793 298994.19491789944 285638.1817472046 206274.49069638786 185555.51220049377 222647.841961162 234428.6194132128 0.547056932244821 1.0708879204081894 1.3120904823990565 0.8860318489100438 1.275416780025825 1.2184441578087697 0.8799031927616338 0.7915224372559503 0.9497468462616095 1.0 17.838789181420072 2.1648644878940573 13.450274985813122 0.8771389332787044 1.0669908695749935 0.09290507445477492 0.213833842604842 1.8854469474702573 339.9548699577579 0.08019618529349863 0.059230499168618535 146.17210051831253 -2.1648644878940573 0.18985193629628905 ETSSALTHAGAHLDLSAFSSWEELASLGLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETSSALTHAGAHLDLSAFSSWEELASLGLDR 31 0 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ; 274.58 6.920999999999997e-72 316962000.0 133785.0 186844.0 195096.0 216131.0 186951.0 208868.0 203236.0 104328.0 238012.0 170654.0 False True 133064.71642491088 193062.9895904168 222563.82099516847 243493.16243958916 210758.10170460853 194429.44678238558 193404.69824308506 112113.48512684967 179357.13179740123 159762.71561575984 0.8328896758674317 1.208435828386558 1.3930898716722464 1.5240925362411009 1.3191945373005305 1.2169888702317855 1.210574679440455 0.7017499965166479 1.1226469899821139 1.0 17.285571235191203 1.8996158994998968 7.428159854892887 0.9162539152328147 1.2648983807710954 0.33601603429023996 0.19349666223422934 0.28319273331245187 18.463204123419956 0.08573790266363693 0.05332394040308877 79.36260222740758 -1.8996158994998968 0.34864446553828066 ETSSDVALASHILTALR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETSSDVALASHILTALR 17 0 O00273;O00273-2 O00273 DFFA DNA fragmentation factor subunit alpha 0 ; 116.06 0.00028446 334320000.0 316910.0 417710.0 345030.0 417640.0 342810.0 400550.0 382780.0 357030.0 457830.0 407210.0 False True 315203.79177201143 431613.2248389729 393607.2249454778 470513.1811784055 386464.8215059388 372860.921293279 364263.4690383985 383673.3915616054 345003.93110769236 381221.50916997896 0.8268258327246389 1.13218487010009 1.0324895512912318 1.234225167941962 1.0137539782248277 0.9780689502675145 0.9555165704881065 1.0064316475661743 0.9049959742797778 1.0 18.540269995304367 3.005356408805475 24.985391029302416 0.9738108011161266 1.0681143522746404 0.14299443927448918 0.09900777510394215 255.47975149726622 1191692.9207193784 0.027699705993431044 0.033009255701731396 1012.4099594111195 -3.005356408805475 0.09430355115851374 ETTESLHGDISSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETTESLHGDISSLK 14 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 153.39 6.4042e-06 358860000.0 291570.0 336130.0 360940.0 349210.0 336000.0 404120.0 405120.0 398390.0 416420.0 410890.0 False True 290000.2195164722 347317.8838551241 411757.2146532788 393419.9501946922 378787.6083719719 376184.13559615554 385522.79789131175 428119.8847834291 313798.87074212136 384666.6484193722 0.7539000864985504 0.9029061533727519 1.070426085404659 1.0227555516218731 0.9847165329472731 0.9779484058260002 1.0022256919737065 1.1129633581247813 0.8157683335208484 1.0 18.553249224149805 4.57003275437304 3.1153890716770682 1.007480590723501 0.7519703150420144 0.5053725608593809 0.07382798792898719 0.20979031865324324 3.448343666254831 0.01759228031861331 0.10388271135163389 37156.32512409403 -4.57003275437304 -0.25551027568148654 ETTLITPFPVLLFGGDIEVQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETTLITPFPVLLFGGDIEVQHR 22 0 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 0 97.256 0.00134 34495000.0 64732.0 67239.0 65199.0 83930.0 79887.0 67502.0 72828.0 62824.0 77166.0 84707.0 False True 64383.49010440133 69477.00946816611 74378.45248013288 94555.52939446314 90060.13592265378 62835.745622616174 69305.0314100228 67512.24589380811 58149.473271424315 79300.92673868877 0.811888243331088 0.8761185061191746 0.9379266490191679 1.1923634853100913 1.1356757055238282 0.7923708865303881 0.8739498295952544 0.8513424580304523 0.7332760872144356 1.0 16.275050105421933 2.7135715878055118 24.888468097468156 0.8440054770113881 0.9926848259499075 0.24729461508674655 0.12239422633853778 1095.1063531829006 1090697.9728798761 0.042532780351678554 0.04011512060841907 517.0964875848302 -2.7135715878055118 0.14867934893851942 ETTMS(ph)PLLFQAQPLSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETTMSPLLFQAQPLSHR 17 0 Q5VVP1 Q5VVP1 SPATA31A6 Spermatogenesis-associated protein 31A6 1 ET(0.315)T(0.315)MS(0.369)PLLFQAQPLSHR 68.944 0.059846 330880000.0 337310.0 301900.0 273740.0 221540.0 220430.0 353560.0 325850.0 277250.0 443810.0 303340.0 True False 335493.9604386639 311948.5589975959 312280.2126092666 249586.94128499198 248500.45390902893 329119.22939071717 310087.3906321182 297939.8028469739 334438.9722493177 283980.58149755996 1.181397540174931 1.0984855279630317 1.0996534022237354 0.8788873519759889 0.8750614306040644 1.15894976922408 1.0919316701053468 1.0491555488611246 1.1776825390161096 1.0 18.115432756508397 ETTSGTSTEPVKNS(ph)SPAPPQPAPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 ETTSGTSTEPVKNS(0.5)S(0.5)PAPPQPAPGK 162.91 1.1354000000000002e-11 457190000.0 352350.0 356310.0 342370.0 313280.0 353090.0 416630.0 375170.0 380700.0 576300.0 433640.0 True False 350452.98674976535 368169.562956057 390572.720066613 352941.2158786782 398053.918571605 387829.3487415279 357021.59381142235 409109.76715542976 434278.5870243611 405964.7239421176 0.8632597023374201 0.9069003813458201 0.9620853661223551 0.8693888780568051 0.9805135645932612 0.9553277067413979 0.8794399433146967 1.0077470849751975 1.0697446389117309 1.0 18.630994845185082 1.5956196206404218 5.074320020641394 1.0358154661923302 0.9204507090269989 0.6000639632892086 0.04104996362964616 0.09784108466577573 5.437145640745993 0.02248586398635763 0.010352580856820398 39.41119655969856 -1.5956196206404218 -0.11536475716533134 ETTSGTSTEPVKNSS(ph)PAPPQPAPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 ETTSGTSTEPVKNS(0.024)S(0.976)PAPPQPAPGK;ETTSGTSTEPVKNS(0.17)S(0.83)PAPPQPAPGK;ETTSGTSTEPVKNS(0.155)S(0.845)PAPPQPAPGK 215.59 1.0374e-33 3297100000.0 1097770.0 1092600.0 998480.0 968440.0 1101680.0 1371720.0 1290790.0 1209920.0 1897450.0 1452060.0 True False 1091859.728293712 1128966.5305093525 1139057.3050562595 1091044.4047036092 1241972.417831051 1276896.2250815558 1228349.5564033515 1300210.374249271 1429848.8720273725 1359388.2876288898 0.8031993053273881 0.8304959964592236 0.837919022417839 0.8025995329168689 0.9136259515648459 0.939316777040046 0.9036046342181583 0.9564672478657 1.0518325669271311 1.0 20.374526167170227 2.494801302639208 0.5558853025298464 1.0186066813412975 0.8026902285430061 0.838314944945525 0.032511944875381255 0.3535234620499586 0.22560326238486256 0.02961109154214133 0.028449932696889207 312.4649457983196 -2.494801302639208 -0.21591645279829141 ETVQTTEDQILKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETVQTTEDQILKR 13 1 P18206;P18206-2 P18206 VCL Vinculin 0 175.0 3.0478e-05 174040000.0 113250.0 114120.0 104310.0 133750.0 127220.0 168490.0 134890.0 134940.0 195710.0 152450.0 False True 112640.27458325797 117918.41521300317 118995.94132122677 150682.7362863036 143420.71290798264 156842.6828827977 128364.85537015954 145009.90801143603 147479.89287964193 142720.5104809885 0.7892367691486258 0.8262191244664223 0.8337690281529504 1.0557889386639752 1.00490610932258 1.0989498450798378 0.8994142112969722 1.016041124872185 1.03334757129591 1.0 17.122833155030996 3.787802929059702 6.517797233519742 1.0121923877418395 0.8155303149512508 0.7769585462687922 0.0488757133645353 0.10354747010985237 10.772015623326473 0.012496473856511946 0.02255966061070402 6134.835599583466 -3.787802929059702 -0.19666207279058867 ETVQTTQS(ph)PTPVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETVQTTQSPTPVEK 14 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 ETVQTT(0.001)QS(0.998)PT(0.002)PVEK;ETVQTT(0.024)QS(0.968)PT(0.008)PVEK;ETVQTTQS(0.997)PT(0.003)PVEK;ETVQTTQS(0.999)PT(0.001)PVEK 359.96 2.0634e-82 2164320000.0 5860700.0 5152890.0 4965950.0 4790640.0 4760270.0 5518710.0 5436350.0 5490830.0 6235130.0 5669630.0 True False 5829146.642384985 5324400.828662219 5665112.595188814 5397134.5328046195 5366462.168169181 5137214.567345983 5173372.98162626 5900583.616469784 4698565.757961481 5307789.359385551 1.098224938425173 1.0031296398843137 1.0673205381015023 1.0168328408249816 1.011054095181807 0.9678633079630511 0.9746756382632993 1.1116838323728915 0.8852208405092782 1.0 22.339679687545512 3.5457833092994595 3.4768791286454643 1.0030894535111654 1.0509121305295206 0.18530610522244928 0.0571337574738782 0.5383558921204943 12.654862608409093 0.015895998179592107 0.024985408865986207 3513.8507362969385 -3.5457833092994595 0.047822677018355186 ETVS(ph)PPCFDEYK ddPTM_BT-474_Trastuzumab_2h_R1 2 ETVSPPCFDEYK 12 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 ETVS(1)PPCFDEYK;ETVS(1)PPCFDEYK 218.5 3.5845e-11 293770000.0 384660.0 402330.0 362460.0 328600.0 307580.0 451700.0 437780.0 388820.0 556480.0 399660.0 True False 382589.03329974395 415721.310836379 413491.2174412027 370200.72630788333 346748.48983050906 420475.0421874278 416602.90891799534 417835.7227879539 419342.960449968 374153.35663385893 1.0225460403236206 1.1110987071624694 1.105138334615662 0.9894358015078732 0.9267549887834686 1.1238040090574375 1.113454955117981 1.1167498978148735 1.1207782932182297 1.0 18.513270192429474 ETVSEAPPLLFS(ph)DEEEKEAQLGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ETVSEAPPLLFSDEEEKEAQLGVK 24 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK 187.75 1.0994000000000002e-17 318650000.0 497490.0 323350.0 266290.0 238952.0 273300.0 445660.0 397920.0 392500.0 664350.0 413000.0 True False 494811.5691163352 334112.5092807976 303781.3173658274 269203.29869969934 308103.13502398774 414852.57317079714 378671.08939798217 421790.34307461506 500629.8443339135 386641.986412911 1.2797667778064472 0.8641392322146437 0.7856914873218315 0.6962598687153598 0.7968693154161267 1.0729630711336118 0.9793842953040895 1.0909067248174327 1.2948150018018743 1.0 18.560638786328056 2.2093196608283536 1.478348885954974 1.1308058512815706 0.8758605440830374 0.25431163180624083 0.16725949716988225 0.5466272574568627 2.3302148205647812 0.10127963824538262 0.05848764835325023 161.9271457816602 -2.2093196608283536 -0.25494530719853326 ETVVEEPVDITPYLDQLDESLRDK ddPTM_BT-474_Trastuzumab_2h_R1 4 ETVVEEPVDITPYLDQLDESLRDK 24 1 Q68E01-2;Q68E01-3;Q68E01;Q68E01-4 Q68E01-2 INTS3 Integrator complex subunit 3 0 ;;; 190.88 9.8374e-18 112664000.0 122683.0 126753.0 118087.0 121403.0 115962.0 138990.0 146160.0 137456.0 203863.0 151290.0 False True 122022.48835936273 130971.8969811936 134712.62316939604 136772.60735227 130729.07333937672 129381.94844726713 139089.68241457868 147713.66470742523 153623.69527424505 141634.5426741144 0.8615305705481969 0.9247171947492048 0.9511283097044699 0.9656726725694932 0.923002756751014 0.9134914831120036 0.9820322061872211 1.0429211823509623 1.0846485071633718 1.0 17.111813635812364 1.9353835365190786 2.635667646783036 1.048008150732929 0.9266010306499407 0.7320157431164269 0.03226259311386519 0.1441204161651853 1.82409467339093 0.017600373869086514 0.009349981018100357 86.17544535458477 -1.9353835365190786 -0.12140712008298837 ETVVEVPQVTWEDIGGLEDVKR ddPTM_BT-474_Trastuzumab_2h_R1 7 ETVVEVPQVTWEDIGGLEDVKR 22 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;; 279.15 2.2751999999999996e-45 14007748000.0 10200187.0 9343485.0 8747242.0 7967481.0 8706127.0 10595853.0 10522170.0 10179675.0 13684218.0 11137150.0 False True 10145270.326539326 9654477.24996905 9978777.641209554 8976163.277675768 9814800.668192409 9863386.622065052 10013172.438507164 10939334.039842272 10311925.833026767 10426367.552006183 0.9730397740090441 0.9259674763826439 0.957071347373467 0.8609099221663853 0.9413442044160336 0.94600411628182 0.9603701757646637 1.0491989645749047 0.9890238169325427 1.0 23.313733288274978 1.9589836123771265 4.15991674762753 1.016672460869926 0.932668656637165 0.5542804369991545 0.03138372319158141 0.15039725127187226 5.450727027369873 0.014315653577634344 0.008592679640736546 90.98789387071078 -1.9589836123771265 -0.08400380423276099 ETVYCLNDDDETEVLKEDIIQGFR ddPTM_BT-474_Trastuzumab_2h_R1 8 ETVYCLNDDDETEVLKEDIIQGFR 24 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;;;;; 306.88 3.8818e-63 11985973000.0 2602849.0 2478158.0 2146747.0 2265135.0 1912413.0 2710275.0 2671691.0 2565568.0 3862082.0 2763180.0 False True 2588835.5501877097 2560641.9909518515 2448990.3177405777 2551900.8587504793 2155947.459790083 2522920.068551098 2542451.0994792553 2757023.71185033 2910323.6403474235 2586831.4867225834 1.000774717439235 0.9898758400362936 0.9467142835977131 0.986496751662645 0.8334317371873288 0.9752935517835146 0.9828437269798519 1.0657917711305476 1.1250534313059148 1.0 21.302754645307395 1.8314000703841442 2.741139015109948 1.0733063445554611 0.9534186215380789 0.4562739862936698 0.05258854780542644 0.22320245400261185 3.0752231168185324 0.02985186959444012 0.014753596052512958 67.82660359388657 -1.8314000703841442 -0.11988772301738226 ETWELEEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ETWELEEFR 9 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2;Q9Y4W2-4 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 0 ; 131.41 0.00077692 146929000.0 258170.0 293390.0 247680.0 241460.0 247930.0 269520.0 259110.0 249750.0 280970.0 260820.0 False True 256780.04140538338 303155.3087919996 282551.1911268473 272028.81124254834 279502.4159037587 250888.71678183638 246575.85940367685 268387.61320480297 211728.7083051095 244174.24430076362 1.0516262357674893 1.2415531771589536 1.1571703311132706 1.1140765973149676 1.1446842671886366 1.0274986925844731 1.0098356610452126 1.0991643036446315 0.8671213825660946 1.0 17.897551506133127 2.4457432268703316 0.7468217053073221 0.9775651683802239 1.160919117431362 0.5090054178166423 0.06908568785535527 0.5745321534482217 0.6430579298093025 0.05243069997523102 0.038644244166316746 279.08932600800955 -2.4457432268703316 0.1833539490511381 ETWYLSWALDTNQEER ddPTM_BT-474_Trastuzumab_2h_R1 3 ETWYLSWALDTNQEER 16 0 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1;H3BSV8 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ;; 207.47 4.0398000000000006e-11 299162000.0 244861.0 260099.0 228663.0 240827.0 259529.0 267941.0 265596.0 234809.0 306253.0 270274.0 False True 243542.6955826147 268756.2379818343 260856.76282557443 271315.6735074512 292578.47980109917 249418.86933527005 252748.10680475083 252331.63991594262 230781.05172995236 253024.881926787 0.9625246881968075 1.0621731583678762 1.030953006831374 1.0722885094990644 1.1563229575412155 0.9857483874152727 0.9989061347645792 0.9972601824549217 0.912088368434568 1.0 17.9489197378833 2.5258474716679076 24.999073983544854 0.9813762485670391 1.0580136728988547 0.37412911335285914 0.05044151493724957 430.2381808645873 220733.7797733297 0.01643608069960576 0.015495807657407093 335.61972071937305 -2.5258474716679076 0.07663742433181564 ETYVEQEQGENANDRNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ETYVEQEQGENANDRNDR 18 1 Q9Y2L1;F2Z2C0 Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 0 175.26 3.4568e-12 364390000.0 65434.0 68712.0 59683.0 75953.0 66257.0 70681.0 70893.0 54245.0 87339.0 81088.0 False True 65081.71061440082 70999.03738271886 68085.84762606431 85568.64201236352 74694.43621399319 65794.98883517731 67463.63475244067 58293.037350528706 65815.47373264036 75912.89441707048 0.8573208954046408 0.9352697974160415 0.8968943701711088 1.1271950920780827 0.9839492590496813 0.8667169041624903 0.8886979645617382 0.7678937524139561 0.8669867515661539 1.0 16.212057339387332 2.6932906245246016 6.3501608960390445 0.8562762710316779 0.964482807260477 0.16380587206403396 0.08571953667566798 0.3079496452584134 32.602137352804775 0.028577349458838535 0.02716160502562314 493.503940246774 -2.6932906245246016 0.10820653622879906 EVAALCR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVAALCR 7 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 97.071 0.028538 239610000.0 348900.0 435250.0 413780.0 381420.0 356020.0 417170.0 427930.0 397390.0 511180.0 457480.0 False True 347021.5611664338 449737.0331358187 472036.62735976576 429707.73289212614 401357.03670413524 388332.0198125506 407229.39104864903 427045.259705532 385206.53846106696 428283.23473166744 0.810261838486051 1.0500925477916332 1.1021599471562578 1.0033260656615504 0.9371299274780105 0.9067177706730746 0.9508413078643873 0.9971094478472614 0.8994200734997498 1.0 18.70820567806576 3.2477207958860608 23.608046589117762 0.9499731336320973 1.0035552950411035 0.06129454544419255 0.07652964623202176 244.919573478471 631210.1199499925 0.021413694968808083 0.028552681707267817 1768.971336513531 -3.2477207958860608 0.05358216140900618 EVAATEEDVTRLPS(ph)PTS(ph)PFSSLSQDQAATSK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 2 EVAATEEDVTRLPS(0.881)PT(0.134)S(0.979)PFS(0.005)S(0.001)LSQDQAATSK;EVAATEEDVTRLPS(0.949)PT(0.269)S(0.728)PFS(0.047)S(0.005)LS(0.001)QDQAATSK 250.73 3.0045000000000003e-47 363890000.0 301410.0 270530.0 255160.0 247040.0 235990.0 313230.0 293740.0 225900.0 306100.0 295550.0 True False 299787.2420497991 279534.42751116125 291084.3101095218 278315.2386704179 266041.9276776834 291577.1473641089 279530.6740042307 242757.8050969571 230665.75652985772 276687.7459669145 1.0834857937136355 1.0102884265231866 1.052031809693259 1.0058820555923644 0.9615240702040194 1.0538130134573245 1.0102748606642526 0.8773710026391459 0.833668132731256 1.0 18.077899225272137 1.777875563429587 5.412239234079161 0.8920650107190065 1.0243767911403465 0.5510362780247766 0.050032767184679756 0.12648000335276946 7.909598506839775 0.023137639635021807 0.01264966891849024 59.96192452604986 -1.777875563429587 0.13231178042134006 EVAATEEDVTRLPS(ph)PTSPFSSLSQDQAATSK ddPTM_BT-474_Trastuzumab_2h_R1 3 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 EVAATEEDVTRLPS(0.981)PT(0.019)SPFSSLSQDQAATSK;EVAATEEDVTRLPS(0.589)PT(0.403)S(0.008)PFSSLSQDQAATSK;EVAATEEDVT(0.008)RLPS(0.945)PT(0.036)S(0.01)PFSSLS(0.001)QDQAATSK 388.53 1.7257999999999988e-155 1939480000.0 553135.0 488618.0 436692.0 435449.0 407589.0 592231.0 633074.0 530594.0 776299.0 686168.0 True False 550156.9826190763 504881.3547541821 498174.437805092 490576.79875240824 459493.0431807242 551291.4649318188 602449.7920424666 570189.6185817388 584990.5133236593 642376.1707820202 0.8564405213682234 0.7859590341583597 0.7755182406573723 0.7636908420111328 0.7153021299363322 0.858206592969792 0.9378457972826922 0.8876257316450539 0.9106665843652009 1.0 19.293058850896898 2.490647159992081 4.777564874576357 0.9197067212601266 0.7786812421096665 0.7404083889754275 0.042827144074989686 0.10281211582912454 6.333038247740095 0.014630931181458907 0.012959208642572074 309.49038410232333 -2.490647159992081 -0.14102547915046015 EVADEVTRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVADEVTRPR 10 1 P33992;B1AHA9 P33992 MCM5 DNA replication licensing factor MCM5 0 93.258 0.008124600000000001 297380000.0 110750.0 109210.0 89872.0 99510.0 105110.0 96629.0 96483.0 91215.0 109350.0 112440.0 False True 110153.73430548185 112844.9888311608 102525.1964185724 112107.95579700972 118495.13546421996 89949.26467019909 91815.74868914751 98021.92648038475 82402.1577149295 105263.98293527278 1.0464522739294009 1.072018991534356 0.9739817320195411 1.065017232588903 1.125694963842315 0.8545113168053808 0.8722427760082512 0.9312010029171972 0.7828143626828077 1.0 16.683652363514227 2.7300060797638377 24.999818427642076 0.8865930528836862 1.0533618640521394 0.6455865666923511 0.062386825668471216 391.18287621597244 1143192.4725936216 0.019300922045042867 0.018463236614937893 537.0393144242121 -2.7300060797638377 0.1667688111684532 EVADEVTRPRPSGEEVLQDIQVMLK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVADEVTRPRPSGEEVLQDIQVMLK 25 2 P33992;B1AHA9 P33992 MCM5 DNA replication licensing factor MCM5 0 ; 133.1 3.5878000000000004e-05 152285000.0 214929.0 227370.0 208147.0 203205.0 200279.0 260920.0 264100.0 232019.0 327910.0 272520.0 False True 213771.84614485665 234937.87300193257 237452.28835384332 228930.7321649222 225783.34350336334 242883.21453961378 251324.47404002593 249333.43594860975 247100.97426888443 255127.54028389 0.8379018819645448 0.9208644144826873 0.9307199375246641 0.8973187759744885 0.8849822455550104 0.9520070403585144 0.9850934703496445 0.977289381111765 0.9685390059964749 1.0 17.96085911656193 2.5574355371125947 3.4641986784137764 0.9801001662147517 0.8981542956732173 0.7438319310709725 0.0245368677137996 0.13249751152697714 3.0494268296417477 0.008525330611297758 0.00775897562858772 360.9404347580969 -2.5574355371125947 -0.08194587054153446 EVADIFNAPS(ph)DDEEFVGFR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVADIFNAPSDDEEFVGFR 19 0 Q96GN5-5;Q96GN5-2;Q96GN5 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR 227.95 1.2072e-19 144412000.0 246842.0 289122.0 260196.0 230699.0 237841.0 296871.0 264076.0 262084.0 303378.0 298409.0 True False 245513.0300987246 298745.25099206006 296829.3351358246 259905.46974589833 268128.6415559464 276349.0065291653 251301.6350117151 281642.03891558613 228614.55695692648 279364.282139202 0.878827558837282 1.0693752569385404 1.0625171294729798 0.93034609777492 0.9597813990492274 0.9892066530948498 0.8995481923723384 1.0081533571827523 0.8183385334958895 1.0 18.09178805254044 3.71619046392933 24.686084206537718 0.9474929374620477 1.010153520360642 0.12519188618060684 0.07148214071246609 1245.0046226079933 1373897.4786276289 0.018037571968098562 0.027970677369992345 5202.240956819184 -3.71619046392933 0.06266058289859433 EVAGGAAVGLS(ph)PPAPAPFPLEPGDAATAAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVAGGAAVGLSPPAPAPFPLEPGDAATAAAR 31 0 G3V2N2;Q9UIU6 G3V2N2 SIX4 Homeobox protein SIX4 1 EVAGGAAVGLS(1)PPAPAPFPLEPGDAATAAAR 116.35 3.1256e-05 20374000.0 13675.0 15202.0 13306.0 13747.0 11430.0 13864.0 11396.0 14003.0 15603.0 15214.0 True False 13601.375319435327 15707.989380196934 15179.369142174684 15487.368790488343 12885.542749082251 12905.614312345584 10844.731943052391 15047.97496579323 11757.8497194883 14243.029494639279 0.9549496000520497 1.1028545146318085 1.0657402028050156 1.0873647910591917 0.9046911511298947 0.9061003712168774 0.76140626873897 1.056515046286811 0.8255160690296725 1.0 13.79796841995783 3.232941745682202 24.9822138431345 0.9114628950079645 1.0572372952184452 0.40581721452739006 0.08507707412118003 131.54164762719904 584850.5157050411 0.02376435275903669 0.029159954496480053 1709.785956673253 -3.232941745682202 0.14577440021048071 EVAWVIFDEIHYMR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVAWVIFDEIHYMR 14 0 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 ; 189.3 7.3438e-07 299770000.0 222231.0 279220.0 265470.0 271010.0 260760.0 254010.0 276060.0 226102.0 285330.0 266650.0 False True 221034.5329881852 288513.6689079456 302845.8684933952 305319.8382127184 293966.24035439093 236450.8865752238 262705.923148389 242974.87936269215 215014.24472611645 249632.1687094498 0.8854409034336045 1.155755167290761 1.2131684392241993 1.2230788996112285 1.1775975903832416 0.9471971813473773 1.0523720741061857 0.9733316047319761 0.8613242669712748 1.0 17.929444332704243 2.7365634570248107 24.986981961447896 0.9730312460506716 1.14206253064132 0.4018458364555684 0.09954537437167861 184.34967758198917 2306425.86857712 0.032280314172592056 0.031846964207805466 545.2095532717545 -2.7365634570248107 0.1690312845906483 EVAYLGNEVSDEECLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVAYLGNEVSDEECLKR 17 1 Q8NFW8 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase 0 149.52 5.158399999999999e-07 187390000.0 199400.0 211310.0 210100.0 211470.0 197690.0 305590.0 246970.0 256280.0 319860.0 258680.0 False True 198326.45255542273 218343.3256104073 239680.25377806256 238242.08031749242 222864.64969956863 284465.28258148313 235023.1175829806 275404.9149634716 241034.78890441125 242170.82093290956 0.8189527201973132 0.9016087271343752 0.9897156596106309 0.9837769860122597 0.9202787059193664 1.174647224160382 0.970484869637085 1.1372340974132846 0.9953089640439671 1.0 17.88566552018176 5.306132300508004 0.51303091307603 1.058266560340393 0.4845039810954083 0.4876001739161604 0.0709512563480544 5.605598842002711 0.7350141088889304 0.037255070546005194 2.184391508209959 202363.55513178793 -5.306132300508004 -0.5737625792449845 EVCFACVDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVCFACVDGK 10 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 132.91 0.00049099 391250000.0 418530.0 401550.0 360540.0 348550.0 308550.0 421950.0 444610.0 388620.0 588500.0 471810.0 False True 416276.68098305445 414915.34900789894 411300.8981301412 392676.3942623633 347842.01358086814 392781.5896634607 423102.51572486194 417620.7977723748 443472.0604959857 441698.68186313676 0.9424449247327401 0.939362887065312 0.9311798178686562 0.8890141863362786 0.7875097387966606 0.889252347339281 0.9578985247141014 0.9454879874461055 1.0040149058751286 1.0 18.752703001466557 1.7085021093444763 1.5518058456050645 0.9977061459227531 0.896935794228899 0.45133945396752095 0.0439868750212303 0.3842432057984973 1.8119240350189927 0.0385053234133437 0.01475323132866189 51.109556139446916 -1.7085021093444763 -0.10077035169385407 EVCGFAPYER ddPTM_BT-474_Trastuzumab_2h_R1 6 EVCGFAPYER 10 0 Q9Y3U8;J3QSB5 Q9Y3U8 RPL36 60S ribosomal protein L36 0 ;;;;; 176.38 5.8468e-06 4847400000.0 3058580.0 3804870.0 3636290.0 3611760.0 2996530.0 3213470.0 3532570.0 3090900.0 4276820.0 3453720.0 False True 3042112.945120183 3931512.7978575183 4148248.0248007197 4069008.4456779007 3378120.3336751936 2991330.382594713 3361686.0933721084 3321558.653272173 3222855.0174518963 3233300.632721544 0.9408691893149342 1.2159440907133567 1.282976282137131 1.2584689479533249 1.0447900512213588 0.9251630832969717 1.039707245083022 1.0272965710820217 0.996769364665959 1.0 21.62457622500102 3.099743656636223 5.975759308927852 1.003419563803579 1.1843035945223825 0.4539769618269228 0.09151115053973724 0.1895624528902385 9.639267051852901 0.027199893336729414 0.03267457065103849 1258.1825472985572 -3.099743656636223 0.18088403071880355 EVDDKDAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDDKDAPR 9 1 Q8WXA9-2;Q8WXA9 Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 0 ; 75.294 0.035266000000000006 931730000.0 3145700.0 2734700.0 2462200.0 2436200.0 2307700.0 3013500.0 3067900.0 2895800.0 4471200.0 3187100.0 False True 3128763.9007201223 2825722.836338942 2808856.3581739445 2744622.6702107843 2601571.916190469 2805183.8380159717 2919493.9564838945 3111899.3005744526 3369332.6710104495 2983696.549386415 1.0486200084132349 0.9470543634606676 0.9414014835897351 0.919873259489208 0.8719291231963491 0.9401706211018162 0.978482197556007 1.0429677579693557 1.1292477687462348 1.0 21.508669386098052 1.783454053843523 2.521181030028656 1.0693517645400559 0.9412525666681921 0.4967098018139279 0.050548048629603284 0.20791415582880954 2.5904573978000585 0.030857206262734863 0.014304523768296547 60.737100268870186 -1.783454053843523 -0.12809919787186375 EVDDLEQWIAER ddPTM_BT-474_Trastuzumab_2h_R1 4 EVDDLEQWIAER 12 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;;; 324.1 9.6832e-47 958650000.0 449400.0 520450.0 471380.0 472440.0 468660.0 542550.0 527650.0 456220.0 573680.0 535590.0 False True 446980.4803330343 537772.8636313309 537746.2066915908 532250.8555596357 528341.0730345479 505044.7955253237 502125.55368125543 490265.4530382188 432304.25091815955 501408.1876583317 0.8914503020393728 1.0725250940612456 1.0724719299119632 1.0615120946575383 1.053714490586996 1.0072527891576235 1.0014307026502178 0.9777771187340367 0.862180278581209 1.0 18.93562602904031 1.7125623992016261 1.985229867496592 0.931578466777433 1.0323389169577428 0.2695545215959183 0.059524464561488834 0.35896004782175334 2.918837234760765 0.04115231736566495 0.01662069913590511 51.58962834528778 -1.7125623992016261 0.10076045018030988 EVDDLGPEVGDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDDLGPEVGDIK 13 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 212.89 2.3903e-08 166030000.0 427250.0 385600.0 331800.0 363410.0 355850.0 441370.0 405440.0 433390.0 609720.0 446010.0 False True 424949.73347193724 398434.4628998777 378514.5559426996 409417.6687387336 401165.38821180374 410859.1307732231 385827.3182687925 465731.76250982884 459462.6758294182 417545.25995162793 1.0177333434971028 0.9542305975309977 0.9065234173333689 0.9805348258202335 0.9607710269738859 0.9839870552495809 0.9240371171103464 1.1154042619566158 1.100390113116471 1.0 18.671573061888722 1.7367177539188852 10.382956306985422 1.0794827878931519 0.9603798891126978 0.6065819089100024 0.040731420696896316 0.05280638918839614 26.853326749551723 0.01846724070564782 0.01002978576498649 54.540329067770955 -1.7367177539188852 -0.1191028987804541 EVDEDFDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVDEDFDGK 9 0 Q9BUP0;A0A087X1Z2;Q9BUP0-2;Q8WYH2;C9JTV4 Q9BUP0 EFHD1;PP1187 EF-hand domain-containing protein D1 0 ;;; 166.16 0.0001418 1058911000.0 2678070.0 2125610.0 1682580.0 1425960.0 1456290.0 2367630.0 1992270.0 2105620.0 2885880.0 2135000.0 False True 2663651.5686815483 2196359.6438916204 1919472.6387524623 1606486.3897930256 1641739.899392913 2203961.310901526 1895896.2888895194 2262752.056521712 2174693.5428108 1998742.4721345403 1.3326637152193619 1.0988707522415515 0.9603401466235806 0.8037485630039131 0.8213864078445438 1.1026739770771088 0.9485445550495621 1.1320878442660123 1.088030885984203 1.0 20.930661169416464 4.646507857912519 2.661935496961079 0.9858344194719483 1.36658780876217 0.5116530486186253 0.10423941216190079 0.33937257909554813 3.5805039040261617 0.02894772047678494 0.25835744529064386 44310.62317647916 -4.646507857912519 0.3807533892902216 EVDEDFDGKLSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDEDFDGKLSFR 13 1 Q9BUP0;A0A087X1Z2;Q9BUP0-2;Q8WYH2;C9JTV4 Q9BUP0 EFHD1;PP1187 EF-hand domain-containing protein D1 0 ; 142.39 3.5845e-05 480360000.0 487300.0 576840.0 503420.0 508640.0 525590.0 595020.0 655780.0 529720.0 795730.0 653420.0 False True 484676.4309441201 596039.7706928562 574297.1601949184 573033.7718479665 592520.7710840013 553887.6679264185 624057.4160771227 569250.3962636571 599633.0037357184 611718.1761789925 0.7923198129759361 0.9743698878067198 0.9388263788108783 0.9367610676984254 0.9686172393717235 0.9054621711360552 1.0201714455751592 0.9305762333553597 0.9802438885848345 1.0 19.2225076184113 4.742012903016372 24.967282085890368 0.9579838117267852 0.7923197496628763 0.7033115910403387 0.03291938286078548 165.38663140479397 1196039.5244027528 0.007091834922157253 0.051848421026948 55209.384190698336 -4.742012903016372 -0.16566406206390882 EVDEDS(ph)EPER ddPTM_BT-474_Trastuzumab_2h_R1 4 EVDEDSEPER 10 0 Q53GS9;B9A018;Q53GS9-3;F8WC91 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EVDEDS(1)EPER;EVDEDS(1)EPER;EVDEDS(1)EPER;EVDEDS(1)EPER 218.4 7.1339e-09 2617100000.0 1479288.0 1538839.0 1267305.0 1372069.0 1257091.0 1350750.0 1404366.0 1305773.0 1572693.0 1412839.0 True False 1471323.6777723485 1590058.325867182 1445730.528387472 1545772.7947185955 1417174.0874878876 1257375.8318234852 1336431.4513808966 1403216.4118409432 1185123.8831565208 1322670.4054276783 1.1123887491053404 1.2021576345416494 1.0930391444874001 1.168675724787823 1.0714491544321294 0.9506342824816736 1.0104039871889088 1.0608965061006417 0.8960084676373458 1.0 20.335022172365367 3.0021883930613624 4.188522316231238 0.9960613074522182 1.143653158886692 0.6997666871833976 0.04924813648924065 0.1225624159491974 5.127528176733842 0.01479449502694486 0.016994499612410095 1005.0516781569411 -3.0021883930613624 0.14759185143447384 EVDEDS(ph)EPEREVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDEDSEPEREVR 13 1 Q53GS9;B9A018;Q53GS9-3;F8WC91 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR 171.26 1.5374000000000002e-05 1400940000.0 761850.0 1036790.0 888660.0 1166140.0 1132030.0 1183680.0 1236550.0 998540.0 1524460.0 1164930.0 True False 757748.2842494926 1071298.9283972096 1013775.6036288105 1313773.2044329727 1276187.3104325102 1101854.9876830073 1176733.3524202732 1073056.1252833798 1148777.2597174342 1090583.1700532488 0.6948101759286225 0.9823174956430901 0.9295720229932688 1.2046520068421984 1.17018797417367 1.010335587362134 1.0789946009920712 0.9839287408322895 1.0533605242242496 1.0 20.056668366306923 4.9811944376679005 1.3630929002435719 1.0620703115690533 0.3547401936115143 0.6672549719344238 0.07686121788011928 1.3949435271386736 1.5108231657687226 0.02190431589865739 1.5862778363747445 95762.27119051643 -4.9811944376679005 -0.707330117957539 EVDEISPEDDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDEISPEDDQR 12 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 ; 179.42 4.8244e-05 500490000.0 229180.0 242100.0 248260.0 254620.0 258480.0 258740.0 303640.0 254480.0 289820.0 294490.0 False True 227946.12034429173 250158.15214745974 283212.8500853965 286854.8658932232 291395.8958690094 240853.91280844616 288951.77318255766 273470.5898232567 218397.74438903396 275695.3960744266 0.8268042324607972 0.9073715256381255 1.0272672453657532 1.0404775341833565 1.0569487195583935 0.873623267700217 1.0480834185005845 0.9919302016542588 0.7921704442611563 1.0 18.07271564996028 4.492467812400744 3.7866510891891116 0.9836454975563483 0.8361241107923769 0.26123220629227795 0.08007469675810615 0.28000103706867946 8.498636932448743 0.01933267018436974 0.08076378488103028 31079.055527585624 -4.492467812400744 -0.14752138676397142 EVDEKPASTPWGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVDEKPASTPWGSK 14 1 A0A1W2PNV4;E9PF58;Q92747;Q92747-2 A0A1W2PNV4;Q92747 ARPC1A Actin-related protein 2/3 complex subunit 1A 0 ;;; 144.68 6.5635e-06 2032490000.0 1470180.0 1318986.0 1269479.0 1192157.0 1245099.0 1709196.0 1580851.0 1581782.0 2415230.0 1766701.0 False True 1462264.714232352 1362887.6516661241 1448210.6086907245 1343083.9539653885 1403654.9773700398 1591043.3035346095 1504379.1976927277 1699822.604966244 1820028.928923906 1653948.6296311752 0.8841052787464336 0.8240205452874575 0.8756079739995736 0.8120469583537739 0.848669028906327 0.9619665780607749 0.9095682724004548 1.0277360339452009 1.1004144241951253 1.0 20.657482995533925 2.0842353432999947 1.1212554059451034 1.0540354169036983 0.8478234221881458 0.7882886031196135 0.041524427787820214 0.20748834148567644 0.4859636010392847 0.02980982487541747 0.014782800426976753 121.40465616151621 -2.0842353432999947 -0.20621199471555252 EVDEQMLNVQNK ddPTM_BT-474_Trastuzumab_2h_R1 10 EVDEQMLNVQNK 12 0 Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 Q5JP53;P68371;Q13885;Q9BVA1 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain 0 ;;;;;;;;; 269.33 5.944299999999998e-22 4846220000.0 3557799.0 3384532.0 3241263.0 3007472.0 3035132.0 3854633.0 3768271.0 3603852.0 4944084.0 3999743.0 False True 3538644.205492633 3497184.101627202 3697604.6568369553 3388217.6468369495 3421638.0695632114 3588171.293540071 3585985.33553685 3872789.736229658 3725680.745531411 3744475.9773877403 0.9450305535038572 0.9339582154475305 0.9874825420609364 0.9048576268876674 0.9137828871719054 0.9582572608846828 0.9576734787970363 1.0342674808482637 0.9949805441482785 1.0 21.836332403436426 1.9067653602070243 4.2532476480308 1.0118173478095103 0.9405939960999157 0.6324311590879098 0.02355144259585631 0.14249895181408903 4.301013911926401 0.011327736885484073 0.006525021471310713 80.67990166437991 -1.9067653602070243 -0.0712233517095946 EVDETRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVDETRK 7 1 Q9UHV9 Q9UHV9 PFDN2 Prefoldin subunit 2 0 101.64 0.014284 355730000.0 433430.0 440830.0 363010.0 341960.0 387990.0 339630.0 435300.0 439890.0 666420.0 523720.0 False True 431096.4610386005 455502.7600626379 414118.65266051714 385252.10093805136 437398.2267030985 316152.1775030243 414242.87599251553 472716.82551615953 502189.72057049285 490295.74122074957 0.8792580167334243 0.9290367461249341 0.8446303278699404 0.7857545325171331 0.8921110055209829 0.6448193425377535 0.8448836919552353 0.9641463014530339 1.0242587857690328 1.0 18.903292704658433 1.6635639148691304 3.5187529041959675 1.0062928478813395 0.8286398070553624 0.523229281369085 0.07291459589065992 0.15930115537921405 4.641474528200244 0.0449332527866535 0.020212105602345598 46.085458740431044 -1.6635639148691304 -0.1776530408259771 EVDFKPFGTLLHTYSVLSPTGGENFTFQIYK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVDFKPFGTLLHTYSVLSPTGGENFTFQIYK 31 1 O14929;O14929-2 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 371.65 2.637499999999999e-137 207470000.0 265960.0 284010.0 285520.0 238020.0 240780.0 345360.0 376120.0 324870.0 425610.0 374810.0 False True 264528.1009109339 293463.1011623294 325718.73421567096 268153.3075952595 271441.90578512865 321486.07608999335 357925.63868206926 349113.4490564337 320724.11838181183 350889.30490901513 0.7538790644517521 0.8363409686665251 0.9282663496971763 0.7642105468697347 0.7735827281926217 0.9162036904298181 1.0200528590487494 0.9949389855212546 0.9140321859196447 1.0 18.420656449563975 2.519823503168999 4.331784657790217 0.9838176554530609 0.8173798737454763 0.6985581505871701 0.053100263134301384 0.12622506126709468 5.19634867911846 0.018782634156285727 0.01698125727544044 330.9965774763403 -2.519823503168999 -0.1664377817075846 EVDGEGKPYYEVR ddPTM_BT-474_Trastuzumab_2h_R1 6 EVDGEGKPYYEVR 13 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33;E9PQ14 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;;;;; 172.58 2.1113000000000006e-05 6596940000.0 5539030.0 5390530.0 4928280.0 4744470.0 4708570.0 5806290.0 5748020.0 5265190.0 7463500.0 5848470.0 False True 5509208.4779240815 5569950.532405805 5622138.986622322 5345119.415538534 5308178.479619092 5404914.838836479 5469966.313031242 5658105.213893084 5624220.430776196 5475215.637472921 1.0062084934552185 1.0173024956833678 1.026834258023345 0.9762390688242494 0.9694921316503756 0.9871601771891327 0.9990412570409553 1.0334031732318356 1.0272144154987195 1.0 22.384484354674793 1.7562336723168708 24.999928563281646 1.023148520915589 0.9970715958211391 0.24106126013860174 0.018256145446578775 9.609118866998733 13607.189198638964 0.009312332774682018 0.005164197307137048 57.04711319373684 -1.7562336723168708 -0.02607692509444992 EVDGLLTSEPMGS(ph)PVSSK ddPTM_BT-474_Trastuzumab_2h_R1 11 EVDGLLTSEPMGSPVSSK 18 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 1 EVDGLLTSEPMGS(0.989)PVS(0.01)S(0.001)K;EVDGLLTSEPMGS(0.998)PVS(0.001)SK;EVDGLLTS(0.004)EPMGS(0.994)PVS(0.002)SK;EVDGLLTSEPMGS(0.998)PVS(0.002)SK;EVDGLLTS(0.003)EPMGS(0.995)PVS(0.002)SK;EVDGLLTSEPMGS(0.999)PVS(0.001)SK;EVDGLLTSEPMGS(0.996)PVS(0.004)SK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(0.995)PVS(0.004)SK;EVDGLLTSEPMGS(1)PVSSK 398.12 3.805799999999999e-127 7952250000.0 5654510.0 5238290.0 4682260.0 4475690.0 4559660.0 5657220.0 5395140.0 5291380.0 7094780.0 5575860.0 True False 5624066.746435121 5412643.316036827 5341481.509066497 5042311.895097165 5140305.673777806 5266149.697063451 5134156.466763742 5686249.644683202 5346366.534181325 5220003.841066078 1.07740662989369 1.0369040868236998 1.02327156678406 0.9659594223722596 0.9847321630951145 1.0088401957934092 0.9835541549554102 1.0893190537426698 1.0242073946615027 1.0 22.315619437706488 -0.31933277412317246 7.369204138250286 1.0000000000292022 1.0222477861016213 0.02876048336453152 0.03743462403306403 0.0 0.0 0.0388391746168764 0.009154481249093913 0.4793659981219878 0.31933277412317246 0.022247786072419062 EVDIGIPDATGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDIGIPDATGR 12 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 94.309 0.015544999999999996 2485600000.0 720240.0 884380.0 740280.0 825260.0 853560.0 869740.0 815230.0 857510.0 956400.0 861340.0 False True 716362.3078661874 913816.0536810014 844504.9893708912 929737.831384187 962255.8065535119 809616.9209477375 775794.2104189715 921501.7505475511 720708.035103416 806368.5437697258 0.8883807700598482 1.1332486376625814 1.047294064104832 1.1529936758665176 1.1933201189310068 1.004028402649272 0.962083921071845 1.142779883550001 0.8937700269583285 1.0 19.62107983520845 EVDILNHVFDDVESFVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVDILNHVFDDVESFVSR 18 0 Q8TE68;B4DKV7;Q8TE68-2;K7EN83;Q8TE68-3;K7EKX9 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 0 120.4 4.605e-05 156810000.0 51023.0 48528.0 43517.0 40148.0 43907.0 36898.0 48968.0 47214.0 41519.0 44571.0 False True 50748.29783718823 50143.22514420452 49643.81534345529 45230.732683532806 49498.296192821865 34347.32810854929 46599.230764074215 50737.34842783414 31287.198776096557 41726.440620847105 1.216214397444523 1.2017134555002584 1.1897447902290652 1.0839825302744588 1.1862573336315638 0.8231549971072514 1.1167794345917106 1.215951988065933 0.7498171018321903 1.0 15.34867423957886 4.250921076689989 0.3467526178141085 0.988253415890158 1.366801941425361 0.2981901746431527 0.13453969132775065 7.108652765899963 0.885905135788793 0.13863908362697797 1.102211225025051 17820.54889395916 -4.250921076689989 0.3785485255352029 EVDRNEGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVDRNEGLK 9 1 H0Y6T8;Q9NP72;Q9NP72-2;Q5W0J0;A0A087X163;Q9NP72-3 H0Y6T8 RAB18 Ras-related protein Rab-18 0 92.239 0.0093123 380670000.0 140040.0 194550.0 156570.0 132680.0 169610.0 206970.0 164490.0 161470.0 225030.0 190510.0 False True 139286.04019990668 201025.47914204156 178613.69506916363 149477.27439601315 191208.82814276815 192662.6510549746 156532.9902871785 173519.7113280461 169574.3717475135 178351.48869618302 0.7809637094601252 1.1271309289965226 1.0014701664387409 0.8381049997886122 1.0720898913744827 1.0802413395223758 0.8776657342839915 0.9729086793530066 0.9507875318965175 1.0 17.444363732437427 6.733415951597417 11.890372133254967 0.9729430613326375 0.4203895127860171 0.0 0.10548402661206058 0.0 0.0 0.021906483749652518 0.0 5412724.860399729 -6.733415951597417 -0.5525535485466204 EVDRPGSK ddPTM_BT-474_Trastuzumab_2h_R1 6 EVDRPGSK 8 1 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2;F8WCR1 P39023 RPL3 60S ribosomal protein L3 0 ;;;;; 108.74 0.0034219000000000003 7301130000.0 3208980.0 2977450.0 2791870.0 2730630.0 2841870.0 2818330.0 3269740.0 3057290.0 4189420.0 3239310.0 False True 3191703.2082311953 3076552.623343468 3184941.028630941 3076327.478022198 3203765.299416831 2623505.480735206 3111570.1845802166 3285440.5044040554 3156993.5763519006 3032574.462487182 1.0524731536562182 1.0145019228382663 1.05024330582102 1.0144276805322472 1.0564506623158878 0.8651083471116234 1.0260490626265597 1.0833832919998554 1.0410275544438488 1.0 21.532111639349957 -1.0626779245927755 3.8784100553879393 0.9999944728418144 1.0238682968510968 0.013864616994012535 0.0563899776794146 2.755761446448002e-06 6.662418234066761e-07 0.05583459087116177 0.013157292428483463 0.0865609622117431 1.0626779245927755 0.023873824009282396 EVDWSQNTATFSPAIS(ph)PTHPGEGLVLRPLCTADLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNR 36 1 Q96EK6;G3V4W4 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase 1 EVDWSQNTATFSPAIS(0.779)PT(0.206)HPGEGLVLRPLCT(0.015)ADLNR;EVDWSQNTATFSPAIS(0.944)PT(0.054)HPGEGLVLRPLCT(0.002)ADLNR 186.89 2.2111e-23 245380000.0 5827.5 9120.7 10148.2 8561.5 8556.6 10288.0 11528.5 9408.3 10054.3 9753.1 True False 5796.125387496117 9424.276985920416 11576.97835026433 9645.385022169632 9646.232291058364 9576.814775347037 10970.822411853236 10110.39512037937 7576.552485717562 9130.64880795099 0.6347988526783372 1.0321585228109675 1.2679250504282968 1.056374549612554 1.0564673435537684 1.0488646509991189 1.2015380990559859 1.1073030332275198 0.8297934402120343 1.0 13.156501663902931 4.725320663217556 4.4649135887815765 1.084742495834763 0.6089279570445552 0.5758902871577725 0.11099974088820569 0.12170096102061986 6.041759327766171 0.025974333758986962 0.17830178006564112 53127.65698128748 -4.725320663217556 -0.47581453879020774 EVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNR 36 1 Q96EK6;G3V4W4 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase 0 ; 247.08 2.4599999999999997e-50 1072210000.0 25585.6 7231.5 21497.1 13096.0 31249.0 28398.0 33389.0 26912.0 29069.9 21518.0 False True 25447.8499724274 7472.196105965938 24523.704823857166 14753.95225723686 35228.37492266587 26434.913101701506 31773.846511633583 28920.310096367004 21906.012661703055 20144.70281751335 1.2632526874659882 0.3709261026908662 1.2173773446057894 0.7323986057719406 1.748766176487802 1.3122513318349671 1.577280479114843 1.4356285301575331 1.0874329028402674 1.0 14.298112901994898 3.2529126057796787 24.999750842942102 1.3977873811662265 0.8814404834881755 0.34597467100398704 0.30986772349088226 227.131920446382 395639.0483772839 0.07939630130503078 0.10701419099505419 1790.2455619643931 -3.2529126057796787 -0.516346897678051 EVDYSGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVDYSGLR 8 0 Q9UKY7;Q9UKY7-2;H0Y8K3 Q9UKY7 CDV3 Protein CDV3 homolog 0 ; 134.81 0.0020022 1452520000.0 745660.0 956630.0 992660.0 804850.0 965270.0 1011210.0 1095320.0 618540.0 1168120.0 941140.0 False True 741645.4494106149 988470.8512549539 1132417.8996446056 906743.9274768699 1088191.4128964664 941307.4328322982 1042335.1870712668 664698.5956824785 880252.478006068 881075.6394495086 0.8417500339403221 1.1218910238768436 1.2852675172725627 1.0291328994675175 1.2350715014392666 1.0683616600958596 1.1830257703215041 0.7544171759166769 0.9990657312419228 1.0 19.748906352804347 1.7514853756896693 24.999999999964746 0.8983552895602511 1.1166628798131568 0.30274355834362243 0.13177386596414314 4.0011353742546945 7751.187937950835 0.0583815488537173 0.03237579035515285 56.42679400251508 -1.7514853756896693 0.2183075902529057 EVEDKES(ph)EGEEEDEDEDLSK ddPTM_BT-474_Trastuzumab_2h_R1 6 EVEDKESEGEEEDEDEDLSK 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK 342.11 1.0265999999999997e-80 20876510000.0 9791560.0 5616610.0 5862150.0 4130640.0 4609170.0 7911500.0 7213260.0 7213160.0 13104500.0 6939490.0 True False 9738843.328904584 5803555.468537559 6687489.7652787715 4653578.600475938 5196120.478809042 7364596.626667774 6864327.05647088 7751442.626884308 9875071.566303564 6496605.807003705 1.4990663768464396 0.8933211650737684 1.0293821056634347 0.7163092141836772 0.7998208038430364 1.1336068164591926 1.056602056580184 1.1931526795927527 1.5200355169552822 1.0 22.631254739102314 1.8419295715243573 1.9147392415658209 1.2734481401247988 0.983847588252684 0.15568738832604423 0.23243549621207282 0.524075431943895 3.6478163494685507 0.15146580509882546 0.0679069462956544 69.49116163308584 -1.8419295715243573 -0.28960055187211475 EVEEDEYK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVEEDEYK 8 0 P14625 P14625 HSP90B1 Endoplasmin 0 ;;; 170.66 0.0006837000000000001 3577390000.0 2803730.0 2754900.0 2158300.0 2009650.0 2197580.0 3023680.0 3030980.0 2846610.0 4451890.0 2732540.0 False True 2788635.0292036887 2846595.1811277843 2462169.879720099 2264071.4839459457 2477428.786922848 2814660.118577115 2884359.9179319893 3059038.4929926903 3354781.361769711 2558146.957754808 1.0900996210363034 1.112756705590572 0.9624817965427034 0.885043557440124 0.9684466247776463 1.100273035544228 1.1275192416871493 1.1958024865301313 1.3114107270498956 1.0 21.28666771436239 2.372517507709338 2.2041611154047636 1.1820007442071938 1.002344817402227 0.3686227285072554 0.0944378424341175 0.31151631777750505 3.101648934646754 0.041080824774221515 0.031302324861095576 235.78572463222105 -2.372517507709338 -0.1796559268049669 EVEEEPGIHSLK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVEEEPGIHSLK 12 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ;;; 222.49 2.4679000000000003e-11 3613410000.0 3475660.0 4289100.0 3441290.0 3316020.0 3762380.0 4012210.0 4263820.0 4132660.0 5261400.0 4023330.0 False True 3456947.432742129 4431860.100684303 3925793.7197711077 3735827.792000809 4241496.791626597 3734855.36642643 4057562.7372258375 4441060.074422273 3964798.469147964 3766557.6348538925 0.917800221813472 1.1766340861677052 1.0422762905427816 0.9918413984778238 1.1260936915919852 0.9915832249229097 1.077260228193278 1.1790766277746192 1.0526318334968905 1.0 21.844815174555904 2.0011821564568666 24.999453487003596 1.104892276735086 1.0476823169826088 0.008915247627939604 0.08073268489661496 91.77510388728703 1940747.435618243 0.028721776492702914 0.02103994897745594 100.27257238839637 -2.0011821564568666 -0.05720995975247711 EVEELEQLTQQLMQDMEHPQR ddPTM_BT-474_Trastuzumab_2h_R1 7 EVEELEQLTQQLMQDMEHPQR 21 0 Q15942;Q15942-2;H0Y2Y8;C9JJK5 Q15942 ZYX Zyxin 0 ;;;;;; 263.31 9.5769e-37 1149608500.0 697946.5 787589.7 747496.6 840604.6 738216.9 797425.9 817947.9 680977.8 951644.0 824668.0 False True 694188.8335931466 813804.1470564719 852737.6239230791 947025.0561708675 832224.4464606281 742301.724471658 778380.6352125854 731795.821371202 717124.0875762817 772036.9822062039 0.8991652596866601 1.054099953516362 1.1045295025715762 1.2266576316909208 1.0779593020044584 0.9614846718228792 1.008216773487008 0.9478766409349885 0.9288727147849825 1.0 19.55831043173274 2.742419042351826 20.22014892529364 0.9678538108298804 1.0818068661718894 0.30284010464918754 0.07762745766226091 29.34634467457476 153788.03538404583 0.025540867214740373 0.026065381423694214 552.6103852049877 -2.742419042351826 0.11395305534200895 EVEELILTESKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVEELILTESKK 12 1 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7;Q9BZZ5-3 Q9BZZ5-2 API5 Apoptosis inhibitor 5 0 ; 117.93 0.0010906 194925000.0 173412.0 156817.0 146470.0 149968.0 148617.0 183467.0 177915.0 175565.0 246980.0 182340.0 False True 172478.36905988463 162036.55904712173 167091.70285993742 168953.93342343436 167542.49402802778 170784.3581248633 169308.57174869816 188666.55180100602 186115.0883624444 170702.90509087185 1.0104009007232047 0.949231408574232 0.9788451038427727 0.9897542946530028 0.9814858976116332 1.0004771625529636 0.9918318124613554 1.105233397759525 1.0902865903973225 1.0 17.381128085377334 1.754462930585202 24.999999999454506 1.0740358885702654 0.9848412675534411 0.5892383842790944 0.03000789660167273 3.1960452449094006 5030.535331977311 0.013042064475733263 0.007232563358623755 56.814989478213 -1.754462930585202 -0.0891946210168243 EVEERPAPTPWGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVEERPAPTPWGSK 14 1 A0A1W2PNV4;C9JEY1;C9K057;O15143 A0A1W2PNV4;C9JEY1 ARPC1B Actin-related protein 2/3 complex subunit 1B 0 ;;; 188.59 7.4413e-07 3050630000.0 2059830.0 2273790.0 1992580.0 2003570.0 2181930.0 2447650.0 2457580.0 2370410.0 2989370.0 2637850.0 False True 2048740.1041486268 2349471.725614917 2273117.9441841603 2257221.756569342 2459785.8521876666 2278449.7166483435 2338697.4665327026 2547302.0308980863 2252679.819005749 2469500.154622995 0.8296173216726916 0.9513956584358255 0.920476939403628 0.9140399332811299 0.9960662879825528 0.9226359886566526 0.9470327273130861 1.0315051109146292 0.9122007199670144 1.0 21.235787628372105 6.975655347888822 0.43774104704984856 0.9756214622503757 2.716889410141163e-23 0.4573499213906139 0.04004228358220058 30.350898709468023 0.907131679905391 0.024811810247129543 23.11964930741841 9454865.341320055 -6.975655347888822 -0.9756214622503757 EVEERPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVEERPEK 8 1 Q32MZ4-3 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ; 64.04 0.063385 952040000.0 1793800.0 1573280.0 1426250.0 1397360.0 1332420.0 1660190.0 1691920.0 1616990.0 2012980.0 1586170.0 False True 1784142.380109915 1625645.6737321548 1627053.6028127656 1574265.6327254497 1502095.7891279245 1545424.972966894 1610075.365837942 1737658.0047088466 1516908.0515500596 1484939.2726115428 1.2014918138518673 1.0947556601915132 1.0957037993555712 1.0601548910190852 1.011553682250055 1.0407327770710622 1.0842701755785098 1.1701879240171558 1.0215286776558166 1.0 20.501972501768666 5.035655589693253 1.466201831226682 1.0695184838640808 1.3509594791853943 0.43962712567392737 0.04721267225258509 2.78169523343197 3.1244743443894514 0.01393884013847344 1.4036399282189134 108556.4392655445 -5.035655589693253 0.2814409953213135 EVEGERR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVEGERR 7 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;Q5VU61;P06753-3;P06753-4 P06753-2;P06753-3 TPM3 Tropomyosin alpha-3 chain 0 ;;; 134.06 0.0051495 681540000.0 695380.0 880760.0 818200.0 944120.0 892070.0 684260.0 894280.0 767700.0 1125480.0 993760.0 False True 691636.151343981 910075.5641693376 933395.4480781098 1063645.495197195 1005669.8267868599 636958.716774782 851020.2599186454 824989.6723016106 848120.5346593404 930337.3859992587 0.7434250861595839 0.9782209958077109 1.0032870463176824 1.1432900700370678 1.0809732489753574 0.6846534669684763 0.9147436969917959 0.8867639683376842 0.9116268435760961 1.0 19.82739447758059 2.789889893690443 24.998889331337782 0.876798421055144 0.9984659386491529 0.16841025529212195 0.12170087223368621 603.2654368208816 293807.0221975577 0.0378047787276748 0.040097974569592305 616.4386968713696 -2.789889893690443 0.12166751759400884 EVEISHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVEISHLK 8 0 Q15643-2;Q15643 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 127.02 0.0011942 148120000.0 355740.0 358670.0 282770.0 294400.0 293850.0 377910.0 345800.0 312960.0 479670.0 404750.0 False True 353824.73536642926 370608.1141294061 322581.5581190995 331671.0098144883 331270.055714595 351785.97120445187 329072.33291571715 336314.6643786792 361461.75574869895 378918.5084760909 0.9337752774057353 0.9780681224041893 0.8513217246009873 0.8753096045595148 0.8742514506532678 0.9283947955438786 0.8684514626618748 0.8875646263130481 0.9539300605884934 1.0 18.531528085211175 1.0342152030809897 3.7552454435846907 0.9994164026697391 0.8980915344375496 0.44975362246464434 0.035928879451597964 0.175888712865379 5.631806005837137 0.03560322391589542 0.009178578053824328 10.819699599245656 -1.0342152030809897 -0.10132486823218945 EVEPEPTEDKDLEADEEDTR ddPTM_BT-474_Trastuzumab_2h_R1 6 EVEPEPTEDKDLEADEEDTR 20 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 ;;;;; 220.36 7.8264e-25 7894970000.0 3601500.0 3083220.0 2857930.0 2566410.0 2635580.0 3630720.0 3479150.0 3480900.0 5250230.0 3346700.0 False True 3582109.9241642626 3185843.1138541508 3260301.702427125 2891317.2428600574 2971205.4906934523 3379736.87219557 3310850.222856326 3740662.4336520503 3956381.1659776308 3133110.7407459794 1.1433077923416708 1.0168306764336124 1.0405957440402704 0.9228263799483984 0.9483244406439403 1.0787160594875334 1.0567293966979372 1.1939132520931628 1.262764547235772 1.0 21.579164332426547 1.9727796861221496 2.4251435144219466 1.170683671710376 1.0163152311882957 0.2939011587045909 0.08530807074792897 0.30808126501809247 3.356870182704011 0.04560162371762079 0.02447944463538799 93.92467178588834 -1.9727796861221496 -0.1543684405220802 EVESPYDVHDYIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVESPYDVHDYIR 13 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 0 161.21 4.2548e-05 115400000.0 79040.0 105110.0 96205.0 104140.0 106580.0 107500.0 98746.0 87448.0 106660.0 117830.0 False True 78614.45742216962 108608.52280966318 109749.82777114955 117324.11332228516 120152.3312508474 100068.77802778051 93969.27873364785 93973.81381194653 80375.07217077615 110309.98852066162 0.712668530533341 0.9845755970622756 0.9949219399165548 1.063585581828882 1.0892244017262522 0.907159717535798 0.8518655472078753 0.8519066593352492 0.7286291409206475 1.0 16.751203906678686 2.479035703131994 5.975305421992161 0.849735443035915 0.978792372697831 0.1725277332592764 0.1130559345662546 0.24093014874525667 34.70851166725509 0.03872197352996043 0.03392289046884922 301.32537320852 -2.479035703131994 0.12905692966191606 EVESPYEVHDYIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVESPYEVHDYIR 13 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 166.48 8.817299999999998e-07 0.0 256280.0 336910.0 275190.0 305100.0 301750.0 323430.0 290270.0 266700.0 348150.0 315430.0 False True 254900.21695538505 348123.8456836046 313934.3600056402 343725.62871739233 340176.0738876264 301072.0453723264 276228.53116091783 286602.50827515905 262353.09747098957 295298.98734679015 0.8631936710844118 1.1788860124832685 1.0631067950021964 1.1639918978581916 1.1519716912816025 1.0195498741035522 0.9354198388649516 0.9705502577243239 0.8884320932766697 1.0 18.17181688355931 2.464231102122857 4.264970791565212 0.9495999867986257 1.0927811925207869 0.34483703307013147 0.08756261985497034 0.21494663438901496 9.378763577965278 0.029448565526616403 0.02538592627088911 291.22664168495754 -2.464231102122857 0.1431812057221612 EVFDNDGKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVFDNDGKPR 10 1 Q08209-3;Q08209-2;Q08209;Q08209-4 Q08209-3 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 0 ;; 114.86 0.0011849 1456940000.0 1316860.0 1359200.0 1298120.0 1168620.0 1121880.0 1517750.0 1410740.0 1334570.0 1885430.0 1463990.0 False True 1309770.1720769003 1404440.150346251 1480884.012538691 1316567.172178691 1264744.7680962712 1412831.5148991994 1342497.1166498538 1434162.390209146 1420791.0399676221 1370556.9048151006 0.955648151109493 1.0247222464183066 1.0804980131331903 0.9606074490984428 0.9227962470240487 1.030844841199645 0.97952672518254 1.0464084965539073 1.036652352759697 1.0 20.38633079868467 1.737509276984963 14.45300364553842 1.0309557054160918 0.9955161599085756 0.11228058304498845 0.043479670969362345 0.1510487708637762 336.81040621854964 0.021060871945339704 0.011608155153241026 54.63982213954388 -1.737509276984963 -0.03543954550751627 EVFEDAAEIR ddPTM_BT-474_Trastuzumab_2h_R1 8 EVFEDAAEIR 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;;;;; 223.93 9.788e-09 17101370000.0 7427330.0 8530300.0 7715910.0 7688310.0 7693570.0 8046630.0 8450450.0 7670740.0 9922850.0 8017670.0 False True 7387342.080533936 8814225.878824767 8802243.060108012 8661649.257699817 8673300.53613794 7490385.4078295855 8041669.449646101 8243169.5700284755 7477496.576877812 7505975.436327362 0.984194811613789 1.174294527552774 1.1726980903117512 1.1539671733775245 1.155519440439542 0.9979229843436038 1.0713690069815698 1.0982143013862324 0.9962058416402858 1.0 22.83960813826653 2.7500974876454 24.93582253038827 1.0468736474278395 1.1346101092455938 0.36885680570394597 0.060711306069633625 860.1541596336328 1859139.7417303396 0.018582058088610978 0.019561371966573933 562.4675701403074 -2.7500974876454 0.0877364618177543 EVFEFRPELVNDDDEEADDTR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVFEFRPELVNDDDEEADDTR 21 1 Q8WU90;Q8WU90-2 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 ;;; 257.5 1.5988999999999998e-36 2958350000.0 1862560.0 2146240.0 2119590.0 2127970.0 2088880.0 2201620.0 2150720.0 1982520.0 2259100.0 2267500.0 False True 1852532.1839098686 2217676.3009705218 2418009.8481934513 2397370.7838143203 2354886.486238228 2049427.191456021 2046681.4570517398 2130465.70943258 1702375.0753890937 2122786.2086955835 0.8726890048189161 1.0447007295818294 1.1390736562582426 1.129351026492425 1.1093375661627585 0.9654421076700699 0.9641486498583346 1.0036176515117439 0.8019531446057276 1.0 21.017527650324496 2.6472543470397234 6.012390255438262 0.952137103951958 1.066356510635235 0.28789269566778786 0.08763907220575783 0.32227784113198804 17.30741198037597 0.029414073925098722 0.02769829390824026 443.8685219553534 -2.6472543470397234 0.11421940668327701 EVGDVIALSDITSSGAADRS(ph)QEPS(ph)PVGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVGDVIALSDITSSGAADRSQEPSPVGSR 29 1 M0QZ12;Q96CP6-2;Q96CP6-3;Q96CP6 M0QZ12 GRAMD1A GRAM domain-containing protein 1A 2 EVGDVIALSDIT(0.003)S(0.003)S(0.003)GAADRS(0.991)QEPS(0.936)PVGS(0.063)R 82.31700000000002 0.0014792 43107000.0 29819.0 42607.0 43607.0 39149.0 50382.0 53395.0 44841.0 42279.0 50475.0 42452.0 True False 29658.457817202354 44025.14823852459 49746.48656116125 44105.25938596262 56797.8490624901 49703.92932831014 42671.869520745204 45434.07366841188 38036.112580348126 39742.67701501426 0.746262205890101 1.107754976392065 1.2517145370546547 1.1097707225233024 1.4291399907719509 1.250643717571734 1.0737039556903611 1.1432061723282376 0.9570596506616447 1.0 15.278401433470927 1.2450396585265648 22.517767720711937 0.978529773014838 1.1503431355263194 0.12887608161854625 0.16481861810611628 78.63192728442368 273313.9100231774 0.11858605375232818 0.040721920182077126 17.580841498312584 -1.2450396585265648 0.17181336251148138 EVGGQGAGNTGGLEPVHPASLPDSSLATSAPLCCTLCHER ddPTM_BT-474_Trastuzumab_2h_R1 1 EVGGQGAGNTGGLEPVHPASLPDSSLATSAPLCCTLCHER 40 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 0 64.384 0.0024462 445600000.0 159870.0 83675.0 69567.0 48882.0 53814.0 61697.0 64904.0 66864.0 158230.0 78898.0 False True 159009.277683227 86460.07179239445 79361.42891279618 55070.45618801564 60666.89391943239 57432.03160911608 61764.34556264235 71853.73120851236 119236.3366733727 73862.66209202373 2.152769385499823 1.1705517963145695 1.0744458250627587 0.7455790872985957 0.8213472436702721 0.7775516070293117 0.8362052465113108 0.972801807752224 1.614297850852153 1.0 16.172557639354697 4.840373998222472 1.9812317277533518 0.9493920131760216 2.7395315134110305 0.6857458268217271 0.23642531088521343 0.5890046203772938 1.9799395908693544 0.060905750789719666 2.0931192692512606 69242.70065728569 -4.840373998222472 1.790139500235009 EVGIEFMDLYSHLVPVYDVEPLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVGIEFMDLYSHLVPVYDVEPLEK 24 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 212.39 1.9944e-25 522970000.0 525050.0 543300.0 494610.0 437550.0 414610.0 559140.0 577440.0 521270.0 728460.0 591370.0 False True 522223.1891385388 561383.4120682142 564246.7887728115 492943.7851369883 467408.1259139974 520487.9678739841 549507.0211649854 560169.8143554265 548940.7938639007 553628.260302671 0.9432740822389325 1.014007868314568 1.0191798888018024 0.8903876851725268 0.8442634876667303 0.9401398107629676 0.9925559451473223 1.0118157878161407 0.9915331879261228 1.0 19.078558062566632 2.194320005143826 5.170849968562151 1.0019245759729947 0.9418136527363918 0.2496194955640786 0.0485799229218246 0.31741690448797044 19.253907228822946 0.021069195348058994 0.015694589605240356 156.42998553477977 -2.194320005143826 -0.06011092323660283 EVGKGNEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVGKGNEGK 9 1 Q9NZW4 Q9NZW4 DSPP Dentin sialophosphoprotein;Dentin phosphoprotein;Dentin sialoprotein 0 69.954 0.049048 544840000.0 666600.0 1334900.0 1152100.0 1361900.0 1347100.0 951380.0 1036000.0 780980.0 300980.0 964730.0 False True 663011.0996662226 1379331.3395359106 1314305.665767282 1534316.4003612453 1518645.2001127452 885613.3399076263 985884.7220956712 839260.6933360856 226807.51192537262 903160.1054530921 0.7341014020250674 1.5272279313576806 1.4552299839549807 1.6988310168898773 1.681479497315573 0.9805718106462828 1.091594631055009 0.9292490758491266 0.25112658382047237 1.0 19.784622234976265 2.043773301888933 1.3386738365089226 0.6831085587198616 1.4215619797790033 0.4358527847408519 0.32749718738687816 0.39951031722456243 1.3373773928788115 0.22634821508918676 0.11007101342021267 110.60462862948063 -2.043773301888933 0.7384534210591417 EVGSIIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVGSIIGK 8 0 F8VZX2;F8W1G6;F8W0G4;P57721;P57721-4;E9PFP8;P57721-5;P57721-3;P57721-2;F8VTZ0;J3QT27;H3BSP4;C9JZY3;C9J0A4;C9K0A2;C9J5V4;C9JTY5;C9JSA6;C9J7A9;C9IZV9;F8WC71;P57723-2;P57723;Q15366;Q15366-6;Q15366-2;Q15366-3;Q15366-5;Q15366-4;Q15366-8;Q15366-7;Q15365 F8VZX2;Q15366;Q15366-2;Q15366-5;Q15365 PCBP2;PCBP3;PCBP4;PCBP1 Poly(rC)-binding protein 3;Poly(rC)-binding protein 4;Poly(rC)-binding protein 2;Poly(rC)-binding protein 1 0 ; 105.14 0.010927 69760000.0 513920.0 552120.0 513260.0 568840.0 522820.0 621810.0 581690.0 421000.0 640040.0 520150.0 False True 511153.11182188 570496.9804364116 585522.5466641049 640855.0856755209 589398.0280030774 578825.7382832946 553551.4324284091 452417.1577946829 482310.718096602 486953.581677181 1.0496957637345026 1.1715633725733934 1.2024196323752863 1.3160496396150687 1.2103782581761775 1.1886671749896256 1.1367642692386606 0.9290765584605689 0.9904654904383537 1.0 18.893424729956262 1.8828820625422726 3.8312939515122615 0.969478045213958 1.1945766176644503 0.6995834322350777 0.0633581362209717 0.1311333883893563 3.1514085936720693 0.032985209520237 0.018352373705727443 76.36283837061076 -1.8828820625422726 0.22509857245049236 EVGVYEALKDDSWLK ddPTM_BT-474_Trastuzumab_2h_R1 5 EVGVYEALKDDSWLK 15 1 A0A5K1VW95;P40925;P40925-3;B9A041;P40925-2;B8ZZ51 A0A5K1VW95 MDH1 Malate dehydrogenase, cytoplasmic 0 ;;;; 188.44 2.7287e-07 5219339000.0 5717000.0 5065250.0 4295852.0 3905552.0 4390280.0 5941200.0 6056310.0 5396680.0 8054520.0 5911280.0 False True 5686220.307218415 5233843.784241717 4900670.621385048 4399994.482754731 4949356.134771725 5530498.828080466 5763343.147949079 5799407.665385771 6069591.471038453 5534017.049498578 1.0275032144567802 0.9457585217804744 0.8855539434648263 0.7950814830166456 0.8943514431745694 0.9993642554067609 1.0414393552458028 1.0479562338737716 1.0967785998397679 1.0 22.39989565801168 2.5559009893241345 3.081614548299086 1.0489765795742265 0.9042431077840881 0.5515090087372598 0.05847714501673531 0.20527022496081948 3.7999800260732806 0.022360608663841132 0.020187798387105087 359.66732866846957 -2.5559009893241345 -0.1447334717901384 EVHDELEDLPS(ph)PPPPLS(ph)PPPTTSPHK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVHDELEDLPSPPPPLSPPPTTSPHK 26 0 F5H039;Q9NQX3;Q9NQX3-2;H0YJ30;G3V582 F5H039 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 2 EVHDELEDLPS(0.999)PPPPLS(0.971)PPPT(0.011)T(0.01)S(0.01)PHK;EVHDELEDLPS(1)PPPPLS(0.997)PPPT(0.002)T(0.001)S(0.001)PHK;EVHDELEDLPS(1)PPPPLS(0.992)PPPT(0.003)T(0.003)S(0.003)PHK;EVHDELEDLPS(1)PPPPLS(0.957)PPPT(0.016)T(0.014)S(0.012)PHK 105.7 0.0014922000000000002 716510000.0 432890.0 416767.0 388719.0 386522.0 401211.0 511520.0 423805.0 426778.0 457644.0 447847.0 True False 430559.36833860085 430638.83765402855 443447.25639388256 435455.6455690069 452302.8426860928 476159.826388561 403303.9330576802 458626.34149477293 344863.7683154204 419265.0210388927 1.0269384440221654 1.0271279883710613 1.0576776839028188 1.038616683285421 1.0787993750714906 1.1357012927257544 0.9619307903586551 1.0938817179605091 0.8225436204071732 1.0 18.677502946694208 1.250698067837812 24.99920634009105 0.9112717778202066 1.052614497698324 0.47871867917324173 0.05898423559871263 148.94856177143296 306789.58524998085 0.0367557387216772 0.01320367399657266 17.81140044713343 -1.250698067837812 0.14134271987811742 EVHELYK ddPTM_BT-474_Trastuzumab_2h_R1 4 EVHELYK 7 0 P10155-3;P10155-5;P10155-4;P10155;D6RE09;H0Y9N5 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 ;;; 117.16 0.0052935000000000005 2141250000.0 3939350.0 3935230.0 3679690.0 3516550.0 3314330.0 4106350.0 4285270.0 3674520.0 5483600.0 4155390.0 False True 3918140.9773029275 4066211.75165323 4197758.367561162 3961744.869440004 3736390.2799270153 3822487.68980816 4077975.118778878 3948731.3412344907 4132240.256475425 3890189.452591631 1.0071851319972798 1.0452477446681505 1.079062708569278 1.0183938128773402 0.9604648630770012 0.9825967954495459 1.0482715992307636 1.0150485957962432 1.062220826731855 1.0 21.891408985630477 3.5006911369071485 24.865691902940316 1.0115538510135016 1.0447659235560944 0.17281980683231213 0.03177806388102918 1273.9884748103607 1344025.834279334 0.008885328183211883 0.013672951738464048 3167.3141201576345 -3.5006911369071485 0.03321207254259284 EVIEIEDAS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 3 EVIEIEDASPTK 12 0 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 EVIEIEDAS(1)PTK;EVIEIEDAS(0.999)PT(0.001)K;EVIEIEDAS(0.936)PT(0.064)K 249.33 7.038e-17 509741000.0 1179530.0 855140.0 762450.0 606750.0 632412.0 1114030.0 1018490.0 895720.0 1276270.0 1017060.0 True False 1173179.5415381037 883602.8179569531 869796.3326657979 683564.4877885216 712945.9196004029 1037019.7282445431 969221.7476903687 962563.1747739984 961750.3596418196 952150.3600511267 1.232136845986288 0.9280076498731851 0.9135073294716743 0.7179165355268226 0.7487745103222149 1.0891344180018576 1.0179292980977557 1.0109361033296387 1.0100824407504057 1.0 19.860829891007125 2.709714193333454 24.992547385824324 1.024360051791725 0.8989143984571868 0.16503077800295518 0.1313823990247576 1331.8425848005083 1153907.579515571 0.04485954618320372 0.04230079610042154 512.5239839372915 -2.709714193333454 -0.12544565333453828 EVIEIEDAS(ph)PTKCPITTK ddPTM_BT-474_Trastuzumab_2h_R1 3 EVIEIEDASPTKCPITTK 18 1 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 EVIEIEDAS(0.578)PT(0.422)KCPITTK;EVIEIEDAS(0.999)PT(0.001)KCPITTK;EVIEIEDAS(0.82)PT(0.18)KCPITTK 255.94 8.551199999999999e-31 2650440000.0 2608400.0 1724230.0 1559440.0 1414620.0 1384640.0 2625680.0 2578210.0 2266270.0 3926200.0 2659670.0 True False 2594356.664220483 1781619.9532309554 1778995.5971045312 1593710.7469557447 1560965.6965957354 2444172.92178589 2453492.1325813537 2435390.5752858846 2958640.618384604 2489927.583541952 1.0419406095859138 0.7155308311001477 0.7144768421633727 0.6400630915894637 0.6269120864853599 0.9816240994081541 0.985366863196572 0.9780969500412184 1.1882436412772703 1.0 21.24767235323032 2.6262199084204685 5.5747582523218595 1.0224571273723302 0.7389049003533456 0.5700187254277914 0.12130832391248254 0.17544087442613626 7.508988378056092 0.040430955187968916 0.03799837591260978 422.8826900316192 -2.6262199084204685 -0.28355222701898464 EVIELPVKHPELFEALGIAQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVIELPVKHPELFEALGIAQPK 22 1 P62195-2;P62195;J3QSA9;J3KRP2;J3QQM1;J3QLH6;J3QRW1;J3QSE0;J3QRR3 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ; 123.18 1.4812e-05 727460000.0 938910.0 906850.0 967420.0 924400.0 906360.0 1180370.0 1153980.0 1028530.0 1567230.0 1232270.0 False True 933855.0128827066 937033.9540475996 1103624.3270346178 1041428.9452191324 1021779.5735833932 1098773.8001921042 1098157.5787683039 1105284.1313695137 1181007.166306071 1153625.473600575 0.8094958322721985 0.812251441642518 0.9566573834314711 0.9027444079998801 0.8857116949700511 0.9524527893465515 0.9519186286176998 0.9580961556958487 1.0237353398759783 1.0 20.137743496012313 7.734466378191306 0.22120307177396636 1.0113144764379087 1.5656017807638e-15 0.7591294160826788 0.033661198607659544 21.66818832222587 0.308303998782643 0.05241164285361099 7.657214365883195 54258324.449500926 -7.734466378191306 -1.0113144764379072 EVIEYAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVIEYAR 7 0 H3BS10;H3BP20;P06865;H3BU85;H3BTD4;P06865-2 H3BS10 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha 0 ; 120.49 0.010575 855100000.0 577190.0 806610.0 724110.0 713090.0 705450.0 690370.0 731430.0 677190.0 691060.0 638320.0 False True 574082.4731718377 833457.5262439582 826058.3939230501 803367.1208852356 795284.8759702602 642646.3468561757 696047.9365660592 727725.3565011435 520757.5227295759 597581.871106754 0.9606758520110489 1.3947168857387684 1.3823350972698438 1.3443632742696094 1.3308383577589955 1.0754113836585433 1.1647741844593456 1.2177835233745573 0.8714413001939043 1.0 19.188776856062784 1.6284650480851288 0.8629323988838886 0.9586396292715589 1.2833790603152513 0.37523062325010326 0.1424490623045315 0.58952046255327 0.8573085620315024 0.12845138504820922 0.053131923067122146 42.50744955353787 -1.6284650480851288 0.3247394310436924 EVIITPNSAWGGEGSLGCGIGYGYLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVIITPNSAWGGEGSLGCGIGYGYLHR 27 0 Q9H8Y8;Q9H8Y8-3;Q9H8Y8-2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 0 226.4 1.449e-34 388340000.0 284890.0 358740.0 311900.0 312520.0 299630.0 316390.0 293300.0 291800.0 346160.0 308120.0 False True 283356.18389425456 370680.44403709064 355812.80891660054 352084.99995660264 337786.104453851 294518.70400194864 279111.9584851933 313575.59773037635 260853.50630635594 288455.51780519646 0.9823219401391876 1.2850523604385455 1.233510149585326 1.2205868087930885 1.1710162697666582 1.0210194841925224 0.9676083182908182 1.087084761339682 0.9043110296212774 1.0 18.13798933511106 2.7456756888646634 4.004537463790151 1.0042524257499612 1.1919714159815404 0.5296446413353276 0.08568775480099895 0.17230512407064608 6.542066563193585 0.026956141868629924 0.027123288444820544 556.7698235694188 -2.7456756888646634 0.18771899023157923 EVIKPYDWTYTTDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVIKPYDWTYTTDYK 15 1 O75663;O75663-2 O75663 TIPRL TIP41-like protein 0 140.81 4.4449e-06 1028600000.0 1582400.0 1373600.0 1260700.0 1247200.0 1143500.0 1762800.0 1742200.0 1620700.0 2502000.0 1826200.0 False True 1573880.5342211674 1419319.4456412648 1438195.6017991619 1405095.392121704 1289117.946944493 1640941.7851848511 1657923.1301496895 1741644.8637478445 1885415.6250823366 1709650.3525115212 0.9205862075301512 0.8301811206930395 0.8412220660712378 0.8218612595596416 0.7540243214355176 0.959811333805339 0.9697439758452112 1.0187140669958172 1.10280773043015 1.0 20.70526987322122 2.392401888069683 2.148864363981285 1.0297983768103407 0.8340449723743378 0.7563393902174232 0.0505905007716936 0.15147186260016884 1.431491756195062 0.02136049852818258 0.016451533266423422 246.8322420560375 -2.392401888069683 -0.19575340443600286 EVIKS(ph)PTASR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVIKSPTASR 10 1 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 EVIKS(0.98)PT(0.02)ASR;EVIKS(0.976)PT(0.024)ASR;EVIKS(0.97)PT(0.03)ASR;EVIKS(0.831)PT(0.169)ASR 136.3 7.3499e-05 2318130000.0 1320370.0 1222780.0 1093500.0 1084660.0 1068750.0 1364490.0 1279150.0 1180750.0 1565790.0 1316670.0 True False 1313261.2746268993 1263479.4931138793 1247455.2951276128 1221977.8447873055 1204848.977522454 1270166.0179639645 1217272.6276724709 1268863.5607270112 1179922.035011061 1232638.9933421 1.0654062395561616 1.0250198962862276 1.0120199846553133 0.9913509562715613 0.9774548623159341 1.0304444568316926 0.9875337663722891 1.0293878155571683 0.9572324430625827 1.0 20.233318904527167 4.699267756060316 1.507885908711233 0.9996094050745792 1.0874339463063503 0.5014144952117325 0.020983574618341265 0.8632951104613297 1.9324639540269077 0.005413702929522198 0.11064940821404803 50034.29168791384 -4.699267756060316 0.08782454123177108 EVIRNDGVLLLQALTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVIRNDGVLLLQALTR 16 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 139.88 1.5993e-06 184310000.0 220220.0 318140.0 380560.0 539950.0 426010.0 350040.0 349600.0 195910.0 310640.0 304900.0 False True 219034.35998874233 328729.09758030856 434139.5401131821 608307.6146376792 480259.8483409032 325842.55870552815 332688.51239830814 210529.79901082267 234086.9343627406 285441.020961977 0.7673541779333792 1.1516533134321219 1.5209430608469303 2.1311149062864043 1.6825186748644567 1.1415407554506083 1.1655245320980858 0.7375597182959449 0.8200886248719059 1.0 18.122833155030996 2.204532229180511 1.990033102524596 0.8444179934112762 1.4637057698136022 0.33921152846487945 0.34427683345810933 0.3878414565590769 3.0732168629644683 0.18914866378981 0.11953147829281528 160.15194933857532 -2.204532229180511 0.619287776402326 EVISCMFEPEGNACSLTDSTAEEHVLALVEHAADEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVISCMFEPEGNACSLTDSTAEEHVLALVEHAADEAR 37 0 Q9H8M2;Q9H8M2-3;Q9H8M2-1;Q9H8M2-6;C9JBY0;Q9H8M2-4 Q9H8M2 BRD9 Bromodomain-containing protein 9 0 46.31 0.042755 21363000.0 10785.0 13870.0 11573.0 14183.0 12012.0 12930.0 11793.0 11791.0 11107.0 12565.0 False True 10726.93475832615 14331.65456540794 13202.37780568073 15978.566345784246 13541.656999297975 12036.179533946073 11222.527536365109 12670.904293484824 8369.828676174875 11763.090942562292 0.9119146328719582 1.2183578819026073 1.1223561791833707 1.3583646019405609 1.1511988698735902 1.0232157170863712 0.9540458023459406 1.0771747285943185 0.7115331095409961 1.0 13.521979581014541 2.6088591960448393 2.9624730202350693 0.958320045611798 1.1664158262972795 0.3582574459970508 0.1353865157905571 0.3111331679795847 5.247369353755385 0.04692118929961232 0.04343769927855378 406.31157627745023 -2.6088591960448393 0.2080957806854815 EVKPEETTCSEHCLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVKPEETTCSEHCLQK 16 1 Q9Y5J7 Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 0 188.06 7.4503e-10 277410000.0 205220.0 177070.0 205080.0 170870.0 190640.0 297670.0 247720.0 233310.0 331810.0 230580.0 False True 204115.11832208556 182963.66790892475 233953.4814126847 192502.124480304 214916.87398819227 277092.77353980887 235736.83721770262 250720.77692417445 250039.87152620743 215864.18699053032 0.9455719411716953 0.8475869502010128 1.0837994234909745 0.8917742547481895 0.9956115323456614 1.2836440236006568 1.092060894881299 1.1614746309686528 1.1583203078386335 1.0 17.719764386917845 2.9432701817074385 8.400891378645818 1.1457609411810021 0.9452428972884633 0.5414190869762971 0.0866875973015257 0.24987445048955212 34.82521118350972 0.024666034160699034 0.026286691839197296 877.5465874601578 -2.9432701817074385 -0.2005180438925388 EVLAELEALER ddPTM_BT-474_Trastuzumab_2h_R1 6 EVLAELEALER 11 0 Q16822;Q16822-3;H0YML5 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 ;;;;; 148.91 8.0506e-05 185150000.0 221196.0 251956.0 254577.0 232407.0 272108.0 370364.0 224573.0 200425.0 283463.0 258455.0 False True 220005.10531318618 260342.2031493818 290419.22877704876 261829.70237077348 306759.34088952525 344761.6084230784 213709.54603782945 215381.73123752847 213607.3418595984 241960.18062554175 0.9092616179422791 1.0759712712906597 1.2002769547709273 1.0821189738487667 1.2678091911506169 1.4248691976165797 0.8832426289537573 0.890153622305539 0.8828202281357101 1.0 17.884410117222444 2.1718655330224004 24.999997442086496 0.9025452007292798 1.1594176430160281 0.4600811864399601 0.1303120539823368 50.54096287397161 18944.014848495994 0.05102396292837134 0.037683702544150564 148.54756356472654 -2.1718655330224004 0.2568724422867483 EVLAGR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVLAGR 6 0 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;; 110.56 0.06653300000000001 1077420000.0 988140.0 1145200.0 1072910.0 992130.0 1031670.0 1093100.0 1043320.0 1019050.0 1364140.0 1099550.0 False True 982819.9640326743 1183317.2897119815 1223966.402099101 1117733.5562746187 1163047.059312833 1017536.5698806228 992850.6257305553 1095096.6856310489 1027965.9755394968 1029375.7776278848 0.9547727714144444 1.1495484112117373 1.1890375008819762 1.0858362714249479 1.1298566418504457 0.9884986532570793 0.9645171834317893 1.0638453997379 0.998630430092656 1.0 19.973338309140498 2.738059266425154 24.99987136014768 1.008492457687782 1.1084209447579705 0.3849801925686359 0.06191504208130583 49.46964246918231 2466760.752912039 0.019589701290756965 0.01950604963358804 547.0906170610552 -2.738059266425154 0.09992848707018842 EVLAGRPLFPHVLCHNCAVEFNFGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLAGRPLFPHVLCHNCAVEFNFGQK 26 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 103.67 0.0022991 1363300000.0 552890.0 804170.0 641800.0 760450.0 714810.0 805130.0 833180.0 600410.0 1252400.0 759280.0 False True 549913.301671854 830936.3123189693 732159.8613743961 856722.8920293045 805836.8164891938 749473.258172157 792875.9003433117 645215.643020204 943762.8013002085 710822.1003476869 0.7736300002530492 1.1689792873808096 1.0300184265743457 1.2052564088964772 1.1336687704209423 1.054375289971379 1.1154350715256174 0.9077034080744077 1.3277060474605145 1.0 19.43912901169303 4.746972699106682 24.632048983474927 1.0939752401870155 0.7736298016253661 0.44083059875961306 0.11129352123154085 826.8243814920561 2421019.8630149877 0.025465195148463477 0.29152763119717306 55843.508893505794 -4.746972699106682 -0.32034543856164943 EVLAS(ph)PDRLWGSR ddPTM_BT-474_Trastuzumab_2h_R1 7 EVLASPDRLWGSR 13 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(0.995)PDRLWGS(0.005)R;EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR 227.67 5.2744e-12 1271608000.0 751922.0 816162.0 779342.0 785803.0 793053.0 875112.0 839367.0 683027.0 903708.0 830582.0 True False 747873.7354983882 843327.4587896526 889066.5794379006 885285.5792298042 894043.5987565976 814617.5672320668 798763.611516678 733997.9430808291 681001.2724667898 777573.5456629735 0.9618045002556476 1.084562950338821 1.1433858371298704 1.1385232743161207 1.1497865426920093 1.0476405373815911 1.0272515262021131 0.9439595099072062 0.8758030365939926 1.0 19.568619611345966 2.003221728344396 1.8287877353083422 0.9308509739749501 1.0979735635383145 0.559121035954515 0.05882185568426638 0.2508961510325851 1.566631261138443 0.036561927081304055 0.018521978656616984 100.74458874401748 -2.003221728344396 0.16712258956336445 EVLASHDSSVVPLDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLASHDSSVVPLDAR 16 0 Q9Y2V7;Q9Y2V7-2 Q9Y2V7 COG6 Conserved oligomeric Golgi complex subunit 6 0 161.84 8.2886e-09 201970000.0 51444.0 93208.0 106460.0 108260.0 116210.0 115520.0 96082.0 108800.0 87902.0 102560.0 False True 51167.031219965706 96310.37193457414 121448.64263309172 121965.7048998522 131008.65466936551 107534.37430482978 91434.1465911162 116919.2084752054 66239.72992645389 96014.53299396641 0.5329092338883851 1.0030811891844158 1.2648985403149708 1.2702837903457445 1.364466925830886 1.1199801837455927 0.9522948634959455 1.2177240760266226 0.6898927470762829 1.0 16.550965171752626 1.2446041063054292 24.99603586649139 0.8449463593254459 1.1079579836654685 0.14791477153691657 0.2330160061200591 235.771001320659 975186.2432672675 0.16754189344113696 0.057692404783636214 17.56321858024456 -1.2446041063054292 0.26301162434002257 EVLDEDT(ph)DEEKETLK ddPTM_BT-474_Trastuzumab_2h_R1 5 EVLDEDTDEEKETLK 15 1 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK 283.08 1.1684e-33 3967940000.0 3761450.0 2303150.0 1941863.0 1867879.0 1923195.0 3211297.0 3063485.0 3083279.0 5409930.0 3025571.0 True False 3741198.771136379 2379808.9554664236 2215260.431424228 2104352.289882049 2168102.483580159 2989307.596970027 2915292.5269008293 3313368.935553518 4076725.2408480016 2832476.4684583456 1.3208225426750433 0.840186664202616 0.7820931457305081 0.7429372541362723 0.7654441290946397 1.0553689078296353 1.0292380393499116 1.1697780978766301 1.4392794737203494 1.0 21.43363253985206 2.0819112418196886 1.6002107335801903 1.22285116656387 0.8812976221855633 0.31897169338976206 0.18830285977252517 0.42507468049776687 2.0632207826111277 0.11602085213117723 0.060683455573187925 120.75670154748902 -2.0819112418196886 -0.34155354437830665 EVLDQVCYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLDQVCYR 9 0 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 94.309 0.020493 382170000.0 126030.0 112900.0 115750.0 121050.0 115590.0 134370.0 131520.0 135260.0 179610.0 140630.0 False True 125351.46848324948 116657.80825050885 132046.59388296423 136374.917588464 130309.70134439356 125081.31817295692 125157.8751448096 145353.78803636302 135347.52215069483 131654.87300059947 0.9521217530829923 0.8860880390654258 1.0029753618186465 1.0358516512172173 0.9897825912133174 0.9500697947761294 0.9506512922179471 1.1040517128120368 1.028047948898014 1.0 17.00640139592478 5.194413397988833 0.36034262876830897 1.0322222897296272 0.7945493628262025 0.2514559772681676 0.04909599865075308 11.435464095163436 0.9249747044009938 0.0472698718614767 1.2607515941985674 156463.62863400936 -5.194413397988833 -0.23767292690342467 EVLDSFLDLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLDSFLDLAR 11 0 Q15758 Q15758 SLC1A5 Neutral amino acid transporter B(0) 0 85.37700000000002 0.035504 39244000.0 85370.0 83302.0 89715.0 101900.0 95332.0 95739.0 109080.0 82616.0 113190.0 84159.0 False True 84910.3774054987 86074.65671287752 102346.0921832409 114800.52955195753 107471.96512296653 89120.78827536455 103803.38367393437 88781.22543554763 85295.84116829335 78787.90056785509 1.0777083383808495 1.0924857255048548 1.2990077339996717 1.4570832415198958 1.3640668725575147 1.1311481538794195 1.3175041208838278 1.1268383190269922 1.0826007617100215 1.0 16.26568647203536 1.3605168653072146 1.6932257939634738 1.0108886376047181 1.2534497710032644 0.34477403745976043 0.11638902727640438 0.4196720630867372 2.1752994565389474 0.11452115456298768 0.035307440856164524 22.93595697766201 -1.3605168653072146 0.24256113339854624 EVLDVAAGMIKPGVTTEEIDHAVHLACIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLDVAAGMIKPGVTTEEIDHAVHLACIAR 30 1 P53582 P53582 METAP1 Methionine aminopeptidase 1 0 136.49 1.8997e-06 339510000.0 134200.0 169350.0 145550.0 124980.0 138940.0 175530.0 163960.0 39096.0 198750.0 113320.0 False True 133477.4821110217 174986.71237576305 166042.17485672075 140802.4551855118 156633.18543810034 163396.02425317513 156028.62841197543 42013.542045465394 149770.72561355509 106087.820581867 1.2581791329007306 1.649451477238402 1.5651389004507594 1.327225447871802 1.4764483291201929 1.5401958807051175 1.4707496822556514 0.39602606420822767 1.411761734684505 1.0 16.694899511511984 1.777477409981247 24.999999998931887 0.8752984436275788 1.4777166361046303 0.4763261094767709 0.2539643623600516 36.32337035985982 23343.237380431867 0.10915423185911098 0.06062072321300347 59.906977692262075 -1.777477409981247 0.6024181924770515 EVLEALGEVMVSRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLEALGEVMVSRPR 15 1 Q8NE71;Q8NE71-2;H0YGW7;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 ; 280.87 9.043299999999999e-34 588500000.0 432020.0 565690.0 527050.0 577220.0 476750.0 559540.0 547830.0 472340.0 617150.0 575820.0 False True 429694.05232193467 584518.6496831734 601254.058799276 650295.9928163 537461.2865813611 520860.31681548245 521329.36998617026 507588.4092939202 465061.6518863173 539070.6746156961 0.7971015166578369 1.0843080085925232 1.115352934432782 1.2063278962074806 0.9970145138474054 0.9662189789619037 0.9670890933880356 0.9415990021267256 0.8627099817994368 1.0 19.040114903691872 3.005610603072948 24.97950081693012 0.9490357773384496 1.063267152166388 0.17983753794454194 0.10256322615623373 237.20302522629908 1056060.846350951 0.03016638811484775 0.035955525657224145 1013.0027003900444 -3.005610603072948 0.11423137482793833 EVLEGLDYLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLEGLDYLHR 11 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 0 ; 209.85 1.4759e-08 307000000.0 319430.0 340860.0 322210.0 321350.0 319510.0 332990.0 344640.0 297250.0 350680.0 325090.0 False True 317710.224372009 352205.3190457785 367574.36730047414 362032.8770512423 360197.70461585856 309971.1850741459 327968.44654734805 319432.304404916 264259.6128712528 304342.47787644854 1.0439233674800639 1.1572663845786273 1.2077655733935877 1.189557499752676 1.1835275415023896 1.0184946486503352 1.0776295469359054 1.0495817298779875 0.8682968434611095 1.0 18.215336183066885 2.000668471561379 0.9839566499258474 0.9546220875780739 1.1571046283109792 0.5826257895840337 0.06532627791396142 0.3963099009117225 0.7065672462143053 0.053731821386931805 0.025492108183697067 100.15403978481277 -2.000668471561379 0.20248254073290528 EVLEGLEYLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLEGLEYLHK 11 0 O95747;C9JIG9 O95747 OXSR1 Serine/threonine-protein kinase OSR1 0 ; 183.33 5.3915e-06 576250000.0 767360.0 839310.0 761000.0 728450.0 737690.0 928780.0 886860.0 774400.0 1076940.0 923390.0 False True 763228.6190217113 867245.9259763903 868142.185269423 820671.6953103391 831630.4488688078 864575.6247129489 843959.1936657979 832189.660323522 811542.5672566638 864458.4596460487 0.8828979698275081 1.0032245231673513 1.0042613101673878 0.9493477519398237 0.9620247677480277 1.0001355357976927 0.9762865806314809 0.9626716599711002 0.93878723517721 1.0 19.721437113258045 4.7492229988948615 24.789037554642025 0.9757969551395713 0.8828979107026461 0.607838782067106 0.022742277313334575 997.3348123551133 2318658.4104473954 0.0055164034548116645 0.08151999221277599 56133.61335165853 -4.7492229988948615 -0.0928990444369252 EVLGEHIVPSDQQQIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLGEHIVPSDQQQIVR 17 0 Q8N9N8;E9PQD0;E9PS30;E9PLI6;E9PS76 Q8N9N8 EIF1AD Probable RNA-binding protein EIF1AD 0 ; 144.97 4.917e-07 1020380000.0 365580.0 402530.0 438060.0 455140.0 420420.0 413290.0 406480.0 396960.0 484630.0 454540.0 False True 363611.7578997561 415927.9677154762 499735.04031422286 512760.6773334444 473957.99497542996 384720.2350800134 386817.0094956068 426583.17092203617 365199.4302092939 425530.86804872716 0.8544897331822218 0.9774331287004275 1.174380233814198 1.2049905561133785 1.1138040282453903 0.904094776588474 0.9090222085870225 1.0024729178358653 0.8582207722883108 1.0 18.698904263376395 2.7371513898652564 24.994859183651535 0.9383970885419862 1.0740053881927252 0.2900032039740953 0.10133996744352856 177.4932588182021 3148087.733247367 0.03467982647169741 0.0343555363814175 545.9481389205488 -2.7371513898652564 0.13560829965073895 EVLHGNQR ddPTM_BT-474_Trastuzumab_2h_R1 6 EVLHGNQR 8 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ;;;;; 134.48 0.00087486 5352380000.0 2392620.0 3028580.0 2729860.0 2725160.0 2381480.0 2424650.0 2819020.0 2344340.0 3020620.0 2647250.0 False True 2379738.3997650696 3129384.4544847296 3114200.559631523 3070164.9765830482 2684747.361862152 2257039.6525121704 2682653.232897819 2519286.555117311 2276228.6752343 2478300.238575252 0.9602300652374369 1.2627140189776922 1.2565872815401267 1.2388188197682026 1.0833019018735133 0.91072083090696 1.082456915890081 1.0165380755342306 0.9184636468997314 1.0 21.240919545529472 3.024593489678089 5.1748349568385015 0.996726298618246 1.1894268046842247 0.48896917249063443 0.09288756290801889 0.15399440511225365 11.325293355578019 0.027297938794173568 0.03201948419913948 1058.2627015086903 -3.024593489678089 0.19270050606597866 EVLLFPAMKPEDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLLFPAMKPEDKK 14 2 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 143.38 5.1426e-06 695000000.0 759290.0 538240.0 503610.0 512300.0 433370.0 789390.0 809250.0 747740.0 1349300.0 769490.0 False True 755202.0670050503 556154.9930270495 574513.9105434086 577157.1274726974 488557.10071476595 734821.3273241833 770103.4858647905 803540.1557467841 1016783.0946936848 720380.4894064664 1.048337757769195 0.7720295055259964 0.7975145343216614 0.8011837299317016 0.6781931325170902 1.020046125804455 1.0690232414529879 1.1154385322245948 1.4114528497730825 1.0 19.45839958264143 2.332454635573205 1.9393695654013188 1.1723650716135334 0.8161696366048686 0.5732610874764528 0.13355081499796032 0.2318417191132401 1.7801987137744348 0.059880217009396025 0.042530178604643226 215.00800800216396 -2.332454635573205 -0.3561954350086648 EVLQNQLGIRPPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLQNQLGIRPPTR 14 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 75.67 0.027001 399090000.0 454910.0 799140.0 973180.0 673030.0 402390.0 561720.0 731350.0 278950.0 1176300.0 576180.0 False True 452460.81510525296 825738.8918096683 1110195.2849678006 758235.5289926803 453631.9813476115 522889.6185466504 695971.8064716889 299766.66547939845 886416.6266124527 539407.6991074838 0.838810450525465 1.530825186915119 2.058174710529262 1.4056816953989977 0.8409816583971664 0.9693773733890624 1.290251895965259 0.5557330122936679 1.643314747044096 1.0 19.041016588121778 3.3589763712740406 5.929262814668503 1.0105220967349415 1.519936968775473 0.2080301516167279 0.383674442730881 0.27580013952885757 13.246653285388005 0.10598412265692346 0.14400745593503003 2285.4744538363398 -3.3589763712740406 0.5094148720405314 EVLSEPWR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLSEPWR 8 0 P50416;P50416-2 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform 0 ; 105.39 0.010229 368950000.0 531220.0 821200.0 745700.0 600080.0 777540.0 959080.0 652820.0 547010.0 839430.0 668800.0 False True 528359.9705440906 848533.1455741166 850688.0782594079 676050.0664724112 876555.110159354 892781.0570314775 621240.6025854206 587830.6638604986 632563.7242857182 626116.6114115132 0.8438683160840588 1.3552318052402237 1.3586735485928447 1.0797510466114744 1.3999869899366733 1.4259022053716124 0.9922122992151572 0.9388517300879415 1.0102969842305742 1.0 19.25607185210213 2.151878995634378 8.844190280514592 0.9744174673980694 1.2535600948550616 0.36807800205831187 0.1655150743739187 0.28665708387398064 26.357775360490585 0.06119044098575449 0.045184805716340065 141.86621949163518 -2.151878995634378 0.27914262745699214 EVLTPESDISIAHVLAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLTPESDISIAHVLAAR 18 0 Q17RN3 Q17RN3 FAM98C Protein FAM98C 0 ; 210.39 4.1746e-16 150553000.0 69861.0 70154.0 55946.0 70146.0 61492.0 72920.0 74246.0 53554.0 76507.0 66757.0 False True 69484.87613828678 72489.03348101149 63822.71050865063 79026.47640776864 69322.64170836103 67879.21203521632 70654.43733273681 57550.47142170183 57652.87499127668 62496.51110645694 1.111820082563102 1.1598892833798868 1.0212203750051683 1.264494209495222 1.1092241867754251 1.0861280227241878 1.1305341063340897 0.9208589472085891 0.9224974957893316 1.0 15.931488032525674 1.746862180677382 6.668382563010265 0.9427084636345736 1.1267987664557864 0.6381936717028062 0.06143832617398522 0.08347417767284551 10.720430835991602 0.02900336693364224 0.015365294650974418 55.82929975218033 -1.746862180677382 0.18409030282121275 EVLYDS(ph)EGLS(ph)GEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 EVLY(0.005)DS(0.995)EGLS(1)GEER;EVLY(0.001)DS(0.999)EGLS(1)GEER 153.18 9.4462e-06 1241530000.0 615100.0 640850.0 577660.0 656730.0 627620.0 652410.0 682990.0 606990.0 694850.0 636990.0 True False 611788.3699440347 662180.3048479944 658989.5068892698 739871.9506639558 707543.6868048126 607310.4323079478 649951.164424829 652286.6760327665 523613.52801297465 596336.7528454234 1.0259108918323143 1.1104133724584275 1.1050627078490443 1.240694871033277 1.186483448200643 1.0184018164403978 1.0899062674295759 1.0938226981992603 0.8780500707269012 1.0 19.185767728713337 1.3241774691258532 6.150332007692875 0.9405779696376702 1.112295220985865 0.4982439235171745 0.06818002238112096 0.16182408293685877 8.833241576818722 0.04939437550509135 0.017582555221025163 21.094899911032922 -1.3241774691258532 0.17171725134819482 EVLYDS(ph)EGLSGEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 EVLYDS(1)EGLSGEER 208.01 9.0612e-09 190140000.0 111440.0 142090.0 97178.0 127680.0 126110.0 137630.0 125360.0 106140.0 133260.0 116350.0 True False 110840.01942214808 146819.37975478105 110859.81771368193 143844.27490867453 142169.36098746827 128115.96204617158 119295.85787829489 114060.70576799924 100419.85859251491 108924.44338775337 1.017586282516731 1.347901124746884 1.0177680442124357 1.3205876517230593 1.3052108100416762 1.176191110659152 1.0952165938881226 1.047154359668946 0.9219221642936148 1.0 16.732968215426595 1.842367074136206 1.6232124665014653 0.9689196652017575 1.206975562533784 0.4248801456352508 0.10986763195698757 0.3337238055105721 1.6658315479166073 0.07430995744624398 0.03190757079864661 69.56120139803797 -1.842367074136206 0.23805589733202637 EVLYDSEGLS(ph)GEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 EVLYDS(0.44)EGLS(0.56)GEER 174.24 2.699e-06 243610000.0 95900.0 126130.0 109600.0 106880.0 107140.0 115930.0 113490.0 114350.0 125760.0 106540.0 True False 95383.68505549157 130328.16080280495 125030.72733972249 120410.99704134678 120783.64393146748 107916.03196986612 108000.05512609832 122883.37765753461 94768.13309766386 99740.52598651694 0.9563182478943982 1.3066720825236364 1.2535599356737332 1.2072424508531678 1.2109786141271721 1.0819677448307659 1.082810162247369 1.2320305757576029 0.9501467147914855 1.0 16.605892190695034 2.739407765851736 24.628702114493517 1.096953180567382 1.1984326944119648 0.1962835737841313 0.11100979487260391 116.28595255917743 3380783.0026092343 0.03415322861374057 0.03433156356900604 548.7919924466355 -2.739407765851736 0.10147951384458276 EVMNADDPDLQRPDEEAIKEITEK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVMNADDPDLQRPDEEAIKEITEK 24 2 Q13573;G3V3A4 Q13573 SNW1 SNW domain-containing protein 1 0 ; 203.33 6.799399999999998e-25 508420000.0 593820.0 473730.0 420520.0 425470.0 412670.0 587000.0 602620.0 593440.0 960260.0 573800.0 False True 590622.9390996041 489497.81667416805 479725.5607746355 479334.4583755785 465221.0784132777 546422.0716493692 573468.9683680442 637725.5062272608 723616.7898247665 537179.5927451046 1.0994887875047383 0.911236806619417 0.8930450211690536 0.8923169547936011 0.8660438421271679 1.017205565939379 1.0675553876451134 1.187173740104952 1.3470667903203979 1.0 19.035044972789912 2.1100874192726935 1.8775437777337909 1.1964428538123504 0.929332156156452 0.5205110976557523 0.10063244494469403 0.24556736800659965 1.6696606158395908 0.0538685987786427 0.030386318653679998 128.85088899503546 -2.1100874192726935 -0.26711069765589834 EVMSLHEASR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVMSLHEASR 10 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 81.865 0.01973 181990000.0 82587.0 113890.0 107200.0 114510.0 97790.0 97404.0 115060.0 91130.0 106740.0 103790.0 False True 82142.36076827823 117680.7598020412 122292.82820089637 129006.95425902534 110242.97685325932 90670.69074435283 109494.1082281159 97930.5833487636 80435.35724272128 97166.03334091032 0.845381435713023 1.2111306364555838 1.2585964868178559 1.3276960046974449 1.134583486252527 0.933152127618832 1.1268763832722501 1.007868490475173 0.827813531921295 1.0 16.568164453722158 2.8757295755691836 5.473090422825482 0.9950934966585818 1.177890834863346 0.28407215102038064 0.13795285843259703 0.30898609671925076 12.548360255269536 0.043185227135349676 0.04605121175898773 751.1550227159214 -2.8757295755691836 0.18279733820476407 EVMVDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVMVDDR 7 0 P51149;C9J592;C9J8S3;C9IZZ0;C9J4V0;C9J7D1 P51149 RAB7A Ras-related protein Rab-7a 0 99.375 0.024601 293440000.0 679250.0 1049000.0 1007900.0 881400.0 1175500.0 1042000.0 872330.0 828700.0 952520.0 914290.0 False True 675592.9934717693 1083915.3308661093 1149803.5591761512 992985.1496280215 1325192.9572656315 969968.9926041621 830132.0652757896 890541.8020533357 717784.209114081 855939.2294369491 0.789300186552012 1.2663461301792729 1.3433238244407968 1.1601117409716382 1.5482325283038672 1.1332217980501065 0.9698493032289969 1.0404264361608344 0.8385924893128818 1.0 19.707148845242884 2.3760536839474624 4.494060045196017 0.9750260488439295 1.23685520363739 0.3009220033824296 0.1845252978210698 0.2667186954606665 9.444999871481391 0.06539042718534917 0.05405525952482687 237.7134110426558 -2.3760536839474624 0.2618291547934606 EVMYAYVDQHDFSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVMYAYVDQHDFSGK 15 0 Q9Y6D6;E5RIF2 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 97.291 0.0033705 139800000.0 243380.0 234060.0 236190.0 212860.0 238250.0 292180.0 285370.0 235130.0 346820.0 286370.0 False True 242069.66912205992 241850.54560774186 269443.49899971735 239808.05417497258 268589.72528161394 271982.2843177392 271565.5628807353 252676.5945659474 261350.85814990237 268093.6214263084 0.9029296103137546 0.9021122707845548 1.0050350976879918 0.8944936955200526 1.0018504873508969 1.014504869122743 1.0129504813876418 0.9424938692000968 0.9748492215497957 1.0 18.032377369079537 4.572878788607349 0.7817838411145654 0.9838066491676164 0.8555778982911244 0.38563020466301123 0.037028942692805655 2.3203611138022415 1.2767107110968845 0.013967856472865114 0.2489999372106315 37400.61887463886 -4.572878788607349 -0.128228750876492 EVNKFQMAYSNLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVNKFQMAYSNLLR 14 1 P37108 P37108 SRP14 Signal recognition particle 14 kDa protein 0 ; 212.7 1.8833e-09 925510000.0 754450.0 941110.0 972730.0 1008160.0 861340.0 1173030.0 1231140.0 934720.0 1333450.0 1237000.0 False True 750388.1250272754 972434.2774369902 1109681.9288792722 1135792.952631027 971026.5434378397 1091941.1971156043 1171585.05478848 1004473.5528119863 1004839.1148145659 1158053.6009510176 0.6479735691085812 0.8397143937365309 0.9582301958803793 0.980777531971137 0.8384987902463346 0.9429107566514017 1.0116846524429872 0.86738088115014 0.8676965504786404 1.0 20.14327059988498 4.660614268011774 2.6293271143917636 0.9279811930209506 0.6155953566668452 0.7015454420198399 0.056528815223192024 0.21323492799899083 2.1478443884892178 0.014027250332735743 0.13453747677100175 45773.5154573552 -4.660614268011774 -0.31238583635410544 EVPAESVTVWIDPLDATQEYTEDLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVPAESVTVWIDPLDATQEYTEDLRK 26 1 Q9NX62;H0YB38 Q9NX62 IMPAD1 Inositol monophosphatase 3 0 165.24 2.0656e-11 40366000.0 19924.0 24823.0 23127.0 23446.0 22909.0 28219.0 30186.0 23891.0 34493.0 27176.0 False True 19816.731397764503 25649.21854917962 26383.080576512417 26414.261196027448 25826.32535771873 26268.28695038083 28725.78785828181 25673.867736039854 25992.662332520016 25441.604413455832 0.778910444314731 1.008160418358442 1.0370053770098966 1.0382309529998504 1.0151217249514117 1.0324933334977795 1.129087120114524 1.0091292718340192 1.0216597157203158 1.0 14.634902033125723 4.747396492403949 3.306877511120689 1.0380106986715882 0.7408145325098258 0.8365109984544736 0.03377889320383102 0.12274656322055476 2.159941664074985 0.008169840048608535 0.09407857784489164 55898.02870998764 -4.747396492403949 -0.2971961661617625 EVPAHSTEVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVPAHSTEVGR 11 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ;;; 246.08 5.4469e-16 2124630000.0 840320.0 1066270.0 1109790.0 1138800.0 1087910.0 1131700.0 1033790.0 965710.0 1167640.0 1163250.0 False True 835795.8104883282 1101760.1523761735 1266038.7855323947 1282971.9632362064 1226448.8899522363 1053468.242735248 983781.6282386928 1037776.1839760166 879890.7675743971 1089010.3890915695 0.7674819440295076 1.0117076599197916 1.1625589601477528 1.1781081026292466 1.1262049492248787 0.9673628950537654 0.9033721239880398 0.9529534285175264 0.8079727947392534 1.0 20.054586286665856 2.5252428486056853 5.165517603274994 0.91780902735402 1.0602734649895613 0.22210740297120435 0.11709857494110082 0.31225165222710166 19.1683457310549 0.041114157405551466 0.03770939995541196 335.15279736973883 -2.5252428486056853 0.14246443763554129 EVPCYVFDEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVPCYVFDEELR 12 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 ;;; 176.95 0.00010062 234155000.0 84217.0 108080.0 113969.0 100805.0 102473.0 96791.0 94315.0 99394.0 114142.0 108661.0 False True 83763.58502938822 111677.37746426032 130014.84456369367 113566.90266423048 115522.32914494358 90100.06599150602 89752.62313171176 106811.28499250539 86013.23352443968 101726.16195063746 0.8234222487429973 1.0978235620297137 1.2780866010336975 1.1163981859390186 1.135620640057183 0.8857118391552707 0.8822963671357635 1.049988350532044 0.8455369973181288 1.0 16.634331233893395 2.7433958533105303 24.96051613867452 0.9410564480755647 1.1025756741973651 0.30181700721263593 0.11875040328221055 518.4679808820473 2676443.760310182 0.037727644997958595 0.03886511883813474 553.8547099889861 -2.7433958533105303 0.16151922612180047 EVPEHITEEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVPEHITEEELK 12 0 Q7L0Y3;C9JVB6 Q7L0Y3 TRMT10C Mitochondrial ribonuclease P protein 1 0 160.52 6.783100000000001e-05 123250000.0 119530.0 107440.0 112160.0 92053.0 125610.0 230240.0 114750.0 96774.0 187990.0 146210.0 False True 118886.46376103157 111016.0754511485 127951.15308780363 103706.90036159327 141605.68895120043 214324.0507266625 109199.10411243078 103995.76728841495 141662.38343694186 136878.7526233214 0.8685530915685427 0.8110541141228488 0.9347773166805095 0.7576552121788089 1.0345337478409609 1.5657948850283867 0.797779801609804 0.7597655976205627 1.0349479427737378 1.0 17.062538992150387 3.223491595338187 24.6543317110979 1.0109247809119117 0.8472821822400529 0.1603189784569753 0.20859044885393277 481.2931177544202 787438.9650897285 0.06693390163511291 0.08031024334742781 1672.9832597621455 -3.223491595338187 -0.16364259867185882 EVPEYLNHVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVPEYLNHVSK 11 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 ; 138.45 5.731300000000001e-05 875080000.0 640520.0 904730.0 929810.0 1009410.0 992470.0 1097440.0 1145960.0 1026340.0 1108620.0 1199410.0 False True 637071.5114884621 934843.3911291653 1060719.1659465996 1137201.2025028614 1118855.1716694373 1021576.5558958828 1090525.5368076793 1102930.7024489185 835415.4557469158 1122862.6269334375 0.567363715032816 0.8325536612454928 0.9446562210761675 1.0127696614220592 0.9964310369159363 0.9097965604980822 0.9712012054278879 0.9822490089113095 0.7440050418531193 1.0 20.0987500059098 4.701269226907918 2.1312273589024024 0.9507803731746058 0.4813926683272684 0.7063314109545313 0.07377152639792788 0.3122217173299592 1.6971423197539355 0.018193266571146453 0.27212672219319045 50265.40972124996 -4.701269226907918 -0.46938770484733744 EVPIPEHIDIYHLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVPIPEHIDIYHLTR 15 0 Q9UG63;Q9UG63-2;C9JHK9;C9JZV3 Q9UG63 ABCF2 ATP-binding cassette sub-family F member 2 0 ;; 161.84 9.4208e-07 1213460000.0 589730.0 821120.0 669740.0 730840.0 732350.0 752290.0 739810.0 432625.0 811680.0 705770.0 False True 586554.959205162 848450.4828224783 764033.5705155637 823364.2690652861 825610.431521468 700285.9630001768 704022.5639513506 464909.674325237 611652.3399547689 660727.154359903 0.8877415667491414 1.2841162607346406 1.1563526116249023 1.246148676699904 1.2495482077186613 1.0598716253437435 1.0655269112306898 0.70363337007941 0.9257260518486233 1.0 19.33369511180426 EVPTADPTGVDRDDGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVPTADPTGVDRDDGPR 17 1 Q96KN1 Q96KN1 FAM84B Protein FAM84B 0 80.609 0.010082 486090000.0 331250.0 445090.0 377510.0 410120.0 406450.0 464860.0 397220.0 370020.0 419680.0 436930.0 False True 329466.58680533443 459904.5515874131 430660.1266242576 462041.14994944923 458208.9982821065 432725.32236273575 378004.9510722419 397632.7713234884 316255.48742388305 409044.7533254066 0.8054536432184342 1.124337979765129 1.0528435412583215 1.129561365090735 1.120192826229917 1.0578923671427478 0.9241163662390954 0.972100896273226 0.7731562007648902 1.0 18.641899170582978 2.236886150398613 7.498295615415084 0.9211205773616232 1.0591807213131765 0.272440959150579 0.1039493372638487 0.16127790792502578 58.3175541531996 0.03671823251641476 0.02871018040060651 172.5385525652938 -2.236886150398613 0.1380601439515533 EVPTQFLDRDEEEEDADFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVPTQFLDRDEEEEDADFLK 20 1 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 0 149.44 9.0241e-08 53017000.0 49891.0 39754.0 40097.0 40848.0 36572.0 54200.0 45792.0 41521.0 69630.0 48048.0 False True 49622.39239941123 41077.18785819955 45742.309070628195 46019.352611760216 41229.227420773044 50453.28157307633 43576.86601757238 44619.50785936589 52470.61949419794 44981.535504037594 1.1031724871854822 0.9132011034730554 1.0169130190436098 1.023072069374543 0.9165811473259347 1.121644270426197 0.9687723091102763 0.9919516388087906 1.1664924041885614 1.0 15.457045289803672 2.7444882679446656 24.992814159492603 1.0377566341644602 0.9928892105208761 0.10646541891086603 0.0759711793231336 1330.8181540165465 5611142.620005579 0.022691059096832507 0.02347604709540767 555.2496173728584 -2.7444882679446656 -0.04486742364358409 EVPWS(ph)PSAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVPWSPSAEK 10 0 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 EVPWS(0.861)PS(0.139)AEK 146.36 3.0215e-05 429590000.0 311090.0 309860.0 266360.0 238580.0 266470.0 329010.0 285480.0 295860.0 383180.0 312290.0 True False 309415.1260053484 320173.5027856747 303861.1727573761 268784.20353784115 300403.3750085689 306266.313106233 271670.2417604946 317938.5755466391 288750.4233489412 292359.3848350796 1.0583382715074803 1.0951367371575402 1.0393412646178082 0.9193623241800934 1.0275140480885434 1.0475679215120743 0.9292338671246836 1.0874922853117535 0.987655735805525 1.0 18.157383377495574 4.00041239641684 23.766017482012167 1.0051016339101613 1.0743629354535569 0.2891905740095574 0.04818692283339637 10.040523270379026 578278.5298032783 0.011831529219694492 0.025140527297486892 10009.500288335972 -4.00041239641684 0.0692613015433956 EVPWSPSAEKAS(ph)PQENGPAVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVPWSPSAEKASPQENGPAVHK 22 1 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 EVPWSPSAEKAS(1)PQENGPAVHK;EVPWSPSAEKAS(1)PQENGPAVHK 220.13 6.2926e-26 366370000.0 383580.0 333580.0 277860.0 254740.0 277340.0 417490.0 398040.0 412450.0 590680.0 427560.0 True False 381514.8478997446 344683.0086466315 316980.2727975848 286990.05788091914 312657.6050770316 388629.8989657502 378785.2845395375 443229.1133786632 445114.8287064886 400272.75474746735 0.9531371880168132 0.8611203349678209 0.7919106884943197 0.716986241199408 0.7811113830974774 0.9709126947971698 0.9463179295790783 1.107317718035286 1.1120287939340567 1.0 18.61062389398834 2.287305274127598 1.6602420759740373 1.0757658015311327 0.8186345986827894 0.6790864924719044 0.07231541935150272 0.215040035957139 1.18987408194453 0.03962563808189695 0.025627820072468707 193.7783591507699 -2.287305274127598 -0.25713120284834323 EVQAEQPSSSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 EVQAEQPSSSSPR 13 0 A0A1W2PP04;Q9Y388 A0A1W2PP04 RBMX2 RNA-binding motif protein, X-linked 2 1 EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSS(0.003)S(0.997)PR;EVQAEQPSSS(0.055)S(0.945)PR;EVQAEQPSSS(0.021)S(0.979)PR;EVQAEQPSSS(0.004)S(0.996)PR;EVQAEQPSSSS(1)PR 325.38 9.938499999999999e-52 4528495000.0 5674372.0 6355137.0 6060512.0 6383461.0 6125832.0 6502945.0 6426690.0 5698452.0 6674972.0 6457236.0 True False 5643821.811633998 6566663.8932835525 6913779.410685356 7191606.508089005 6905920.394549086 6053411.718435959 6115806.452360069 6123699.42439294 5030014.590642327 6045129.670162124 0.9336146814998985 1.0862734550915667 1.1436941451910883 1.1896529769387285 1.142394087696034 1.0013700364964402 1.0116915245915725 1.0129971991533324 0.8320772034832841 1.0 22.52734185544761 2.087566930702033 1.2749538243867784 0.9401672324769568 1.101123402839066 0.3891566392054939 0.07998466982677073 0.48508280873026294 1.4796626277540985 0.0574795187616458 0.028796538358310367 122.33956464745154 -2.087566930702033 0.16095617036210919 EVQDKDYPLT(ph)PPPS(ph)PTVDEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVQDKDYPLTPPPSPTVDEPK 21 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 2 EVQDKDYPLT(1)PPPS(0.923)PT(0.077)VDEPK 134.69 1.7933e-05 203830000.0 565230.0 353130.0 314060.0 293090.0 350860.0 468580.0 454970.0 455930.0 685880.0 491610.0 True False 562186.8644829564 364883.71857840696 358276.9181415443 330195.1639488052 395539.94128985115 436188.16751867364 432961.3629458185 489953.81176562945 516854.06432113296 460235.0289115039 1.2215212427714977 0.7928203975290383 0.778465122459063 0.7174490058476114 0.8594303267731223 0.9477509101171565 0.9407396998220887 1.0645730572147303 1.1230220036565621 1.0 18.81201126702466 2.062472830418485 1.5632309125285726 1.0720787457182728 0.8602937937811607 0.2574498111307201 0.13223768123896923 0.49507042933194567 2.2806855870404075 0.08412618360428456 0.04296531440271268 115.47097434725417 -2.062472830418485 -0.2117849519371121 EVQGISEHYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVQGISEHYLR 11 0 Q8IZH2-2;Q8IZH2;H7C5E4 Q8IZH2-2 XRN1 5-3 exoribonuclease 1 0 174.9 1.0457e-05 103550000.0 105700.0 139110.0 151720.0 161400.0 145440.0 150520.0 133250.0 131090.0 152380.0 181970.0 False True 105130.92294437412 143740.1922562291 173080.85722611938 181833.22345128513 163960.92190958196 140114.90668596773 126804.18843556772 140872.601461532 114827.99078738877 170356.51880764487 0.6171229823208638 0.8437610328168942 1.0159919822120258 1.067368743644022 0.9624575746039729 0.8224804525629927 0.7443459711614939 0.8269281530728853 0.6740451823686584 1.0 17.37819762863081 2.5888465160502676 5.69314818427128 0.796597836897553 0.913212175864226 0.08555323244271718 0.13760856234528301 0.4916444939421748 21.580063889504842 0.046530416616877276 0.04361808098785341 388.01321406306323 -2.5888465160502676 0.11661433896667295 EVQQGEEFER ddPTM_BT-474_Trastuzumab_2h_R1 4 EVQQGEEFER 10 0 P00568;Q5T9B7;H0YID2 P00568 AK1 Adenylate kinase isoenzyme 1 0 ;;; 196.07 7.913600000000002e-07 2475460000.0 753907.0 806567.0 788185.0 829940.0 792977.0 884090.0 833928.0 717717.0 944600.0 839020.0 False True 749848.0484789427 833413.0950149534 899154.5969731667 935010.3189043348 893957.9206070862 822974.9392240039 793587.7167256754 771276.6870330799 711815.986991517 785473.0252788379 0.954645193847047 1.061033375040597 1.1447300773364848 1.1903786493144206 1.1381140941023873 1.0477443689830763 1.0103309613260836 0.9819263834799186 0.9062258843819964 1.0 19.583202205761918 2.184960446961034 1.821337894929321 0.9615581993417542 1.1022460914872505 0.461860712043175 0.06336924769461441 0.3315378738924584 2.170642287737619 0.0363474488602156 0.021857454217444304 153.09480254079136 -2.184960446961034 0.14068789214549626 EVQQGEEFERR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVQQGEEFERR 11 1 P00568;Q5T9B7;H0YID2 P00568 AK1 Adenylate kinase isoenzyme 1 0 ;; 210.93 1.7770999999999997e-08 2174200000.0 666020.0 987730.0 969010.0 1065070.0 991160.0 993640.0 1069310.0 889220.0 1054920.0 1079910.0 False True 662434.2223217791 1020605.9959546073 1105438.185214092 1199907.7527959142 1117378.3509344142 924952.0055769675 1017583.3901391145 955578.1117676685 794949.1012037805 1010989.2192425334 0.655233715368495 1.0095122445709945 1.09342232753216 1.1868650327398396 1.1052327064096599 0.9148979909696486 1.0065224937823982 0.9451911984616604 0.7863081881321966 1.0 19.947336182363063 1.5521193084415035 4.013853573584316 0.8855206159224953 1.0081750633970044 0.07012786291554185 0.14329418124967452 0.41674371854441056 15.01028594639567 0.09087697480775742 0.03821709107504427 35.65490703631792 -1.5521193084415035 0.12265444747450904 EVQVEHIK ddPTM_BT-474_Trastuzumab_2h_R1 6 EVQVEHIK 8 0 Q96DG6 Q96DG6 CMBL Carboxymethylenebutenolidase homolog 0 ;;;;; 149.82 0.00049914 2991990000.0 4392250.0 4687570.0 4095910.0 4017300.0 3705880.0 4643920.0 4644250.0 4240880.0 6117150.0 4664230.0 False True 4368602.6140248515 4843592.933754101 4672578.525712063 4525889.76809695 4177801.8515283354 4322896.741011824 4419589.8847421035 4557356.00035229 4609660.348110481 4366554.848151799 1.0004689660256803 1.1092481606647435 1.070083552870014 1.036489847370769 0.9567730159845911 0.9900017041676566 1.0121457392462967 1.0436960392885595 1.0556744409294616 1.0 22.05806403126477 3.478385081377725 24.99941934702164 1.0118998371994468 1.0629353065388185 0.2858985987557372 0.03561656527481263 61.76132280638758 1221690.867499596 0.010300055681376596 0.014138408632951332 3008.742920347213 -3.478385081377725 0.05103546933937175 EVRPDTQYTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVRPDTQYTGR 11 1 O43709;O43709-3;H7C0G4 O43709 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase 0 ;; 182.71 5.1657e-06 1269100000.0 332191.0 455890.0 398790.0 424820.0 419670.0 385390.0 410720.0 348370.0 431880.0 430310.0 False True 330402.5205658901 471064.02305867546 454936.1656551813 478602.16844222374 473112.48692102777 358748.896410478 390851.9044972341 374367.1383870162 325448.96089550783 402847.24739307427 0.820168246659268 1.1693365813147516 1.1293019093445158 1.1880487493445187 1.1744215455924236 0.8905333193463086 0.9702235947410214 0.9293029574103832 0.8078718745171273 1.0 18.619873372236054 2.731563032049843 24.95876656062876 0.9206882173788774 1.107251019813785 0.3916553192161829 0.10965979722828564 535.8257197588856 1911160.7443719965 0.03464352158102596 0.03332644692072393 538.9680637207005 -2.731563032049843 0.18656280243490764 EVS(ph)DSEAGGGPQGER ddPTM_BT-474_Trastuzumab_2h_R1 5 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 EVS(1)DSEAGGGPQGER;EVS(0.986)DS(0.014)EAGGGPQGER;EVS(0.874)DS(0.126)EAGGGPQGER;EVS(1)DSEAGGGPQGER;EVS(0.5)DS(0.5)EAGGGPQGER 336.51 4.608199999999998e-69 3068249000.0 1379948.0 1425189.0 1310063.0 1219845.0 1263239.0 1410432.0 1378310.0 1268165.0 1405013.0 1383663.0 True False 1372518.5132946349 1472625.554320058 1494508.4831282734 1374277.251926473 1424104.9988458357 1312932.155639801 1311635.8796444833 1362801.9119113889 1058766.372359636 1295356.4427265057 1.0595682146033227 1.1368496776226558 1.1537430423263164 1.0609259402252653 1.0993923771655747 1.0135682444874412 1.0125675346036125 1.0520671121555716 0.8173552370891153 1.0 20.30491770769627 2.218063340432559 0.7770155883989254 0.9439797647936217 1.1138304462790742 0.5257676822204729 0.06137426876224521 0.5339930096956335 0.6156651554209482 0.04921998195896953 0.02962547788782115 165.22027490354603 -2.218063340432559 0.16985068148545257 EVS(ph)PAPAVAGQSK ddPTM_BT-474_Trastuzumab_2h_R1 6 EVSPAPAVAGQSK 13 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK 231.92 1.6919e-12 7760780000.0 10228220.0 9339040.0 8675100.0 8312340.0 8100950.0 10176670.0 10452040.0 9650160.0 12356180.0 10090810.0 True False 10173152.399982084 9649884.300831093 9896478.674679061 9364681.391716575 9132557.964407517 9473180.7562044 9946434.89452978 10370303.941719575 9311165.003329286 9446805.866622927 1.0768880554564433 1.021497047475663 1.0476005132745345 0.9913066409889388 0.9667350100497251 1.0027919372911707 1.0528886731622296 1.097757706481459 0.9856416163083354 1.0 23.17139518020859 EVS(ph)PEVVR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVSPEVVR 8 0 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR 160.75 0.00036872 6424590000.0 4466070.0 5152800.0 4547780.0 4764880.0 4579450.0 4928990.0 4902630.0 4536460.0 5288700.0 4938100.0 True False 4442025.175347022 5324307.833066624 5188067.893987617 5368113.319445849 5162615.812973293 4588260.52289442 4665471.057034655 4874993.6808771165 3985370.7499492206 4622946.2302798955 0.9608645556489807 1.1517131214273855 1.1222427507389605 1.1611887856893455 1.1167371532808685 0.9924970558475702 1.0091986418695993 1.0545209565593328 0.8620845996099606 1.0 22.140381151937035 2.737021611508577 23.96381827897263 0.9947224440730416 1.1096324352938276 0.4170802701529964 0.06941271263054417 80.08004543324178 1246911.1685045739 0.021620640458648786 0.021387325275445367 545.7850199538791 -2.737021611508577 0.11490999122078605 EVS(ph)PGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSPGSR 7 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 EVS(0.999)PGS(0.001)R;EVS(0.968)PGS(0.032)R 147.24 0.0022708000000000003 315530000.0 376170.0 465560.0 370640.0 430090.0 440740.0 351570.0 399860.0 419920.0 518280.0 453200.0 True False 374144.7425164162 481055.8831630374 422822.8903393682 484539.3499018788 496865.6265293538 327266.7934067611 380517.24418646254 451256.5627105538 390556.83859619277 424276.3879959592 0.8818420093648471 1.1338266676476443 0.9965741726437889 1.142037039088052 1.1710895081299832 0.7713528319418943 0.8968617037205628 1.063591035178822 0.9205245675842617 1.0 18.694644865841763 2.7597814628063184 24.99971976617465 0.9422922231006928 1.0693636593674203 0.2879654133073365 0.1049044247950504 1165.4151904012288 1372943.052805531 0.032607696727257746 0.03455708861826024 575.1504485234892 -2.7597814628063184 0.12707143626672746 EVS(ph)PLLPK ddPTM_BT-474_Trastuzumab_2h_R1 6 EVSPLLPK 8 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK 137.98 0.00076059 3722760000.0 4871070.0 5197610.0 4679540.0 4560820.0 4386950.0 5588490.0 5499410.0 5448980.0 7479830.0 5302810.0 True False 4844844.700346756 5370609.3068284085 5338378.556709164 5138219.344368584 4945602.079010177 5202170.840190434 5233382.5285136625 5855610.556959788 5636526.121086978 4964380.125835949 0.9759213794151058 1.0818287823848007 1.07533638065442 1.035017306113996 0.9962174437996709 1.0478993768259122 1.0541865038250706 1.1795250179343924 1.1353937406511245 1.0 22.243182157125645 1.9192330701316145 7.996801327596331 1.1234529275131784 1.038601981603776 0.2380962608691477 0.05250959922190955 0.3397822398198566 30.53428919124759 0.021419931634117775 0.01343008093957775 83.02962379128398 -1.9192330701316145 -0.08485094590940245 EVS(ph)PSDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVSPSDVR 8 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 EVS(0.995)PS(0.005)DVR;EVS(0.999)PS(0.001)DVR;EVS(0.991)PS(0.009)DVR 125.75 0.0013099 1592240000.0 2885880.0 3992600.0 3962600.0 3635600.0 3387500.0 3993800.0 3754600.0 3585500.0 4413700.0 3877900.0 True False 2870342.7427314124 4125491.277422336 4520499.636463363 4095866.587233538 3818878.045714449 3717718.006393957 3572975.6540351426 3853068.216800082 3326002.7755499226 3630409.101962781 0.7906389230843327 1.1363709051940976 1.245176372552436 1.1282107531680403 1.0519139684973169 1.0240493294223982 0.9841798964484231 1.0613316870313376 0.9161509576845538 1.0 21.791700700497554 2.8336742693647787 2.766211397319679 1.0034538583459225 1.0910042934392785 0.08821567979105738 0.11373368391622712 0.6654215476947055 9.924904034844626 0.038367535988812596 0.040561645151685616 681.8271166363392 -2.8336742693647787 0.08755043509335603 EVS(ph)RSPTTSSITSGYFSHSASNATLSDMVVPSSDSSDQLAIQTK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSRSPTTSSITSGYFSHSASNATLSDMVVPSSDSSDQLAIQTK 44 1 A0A1B0GUA8;Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9;H0Y9Z7 A0A1B0GUA8 KIF13A Kinesin-like protein KIF13A 1 EVS(0.072)RS(0.072)PT(0.072)T(0.072)S(0.072)S(0.072)IT(0.072)S(0.072)GY(0.065)FS(0.072)HS(0.072)AS(0.072)NAT(0.072)LS(0.072)DMVVPSSDSSDQLAIQTK 79.21600000000002 0.00032428 119990000.0 40243.0 50285.0 58473.0 58207.0 54112.0 58422.0 60220.0 58064.0 71044.0 59944.0 True False 40026.33615941763 51958.7058270756 66705.49014357293 65576.00023190187 61002.842453048004 54383.4246505953 57306.92853726002 62397.0305230178 53536.15814082722 56118.32259935966 0.7132489765450394 0.9258777422486338 1.1886579472411756 1.1685310108084044 1.0870396624033107 0.969084999900119 1.0211803539885906 1.1118833855474108 0.9539871411166894 1.0 15.77618426638053 4.573244888828208 3.419587580770087 1.0679044555897346 0.7166579405945009 0.6619446058663169 0.07655945783659421 0.15291968551972182 3.036658751096791 0.019417041744078593 0.1066262723116319 37432.16002517374 -4.573244888828208 -0.3512465149952336 EVS(ph)SRPS(ph)TPGLSVVSGISATSEDIPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.5)S(0.5)RPS(0.543)T(0.457)PGLSVVSGISATSEDIPNK;EVS(0.5)S(0.5)RPS(0.55)T(0.45)PGLSVVSGISATSEDIPNK 211.77 4.8664999999999995e-26 893180000.0 543440.0 423260.0 371790.0 330420.0 365810.0 503110.0 416050.0 429310.0 584120.0 484800.0 True False 540514.1794218598 437347.95323392685 424134.80034338863 372251.1381212741 412393.7351742586 468331.1898935501 395924.07203465694 461347.29219200864 440171.452806992 453859.64894183853 1.1909280339903623 0.9636193793689123 0.934506518330606 0.8201899838180539 0.9086371439623315 1.0318854980508878 0.8723491347110129 1.0164977064333156 0.9698404646309488 1.0 18.7918867034942 4.7388455691944 4.0792701433337895 0.9426355528058814 1.2122862166839319 0.5836479967999699 0.0621384619757582 0.1624938489462348 5.851782225005622 0.015226272286355294 0.12921722132398816 54808.203773517846 -4.7388455691944 0.2696506638780505 EVS(ph)SRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.5)S(0.5)RPS(0.544)T(0.456)PGLSVVSGISATSEDIPNKIEDLR 200.35 4.2497000000000005e-27 1877600000.0 127200.0 100500.0 94092.0 97203.0 96845.0 122260.0 120390.0 115310.0 160360.0 136460.0 True False 126515.16933324841 103845.08174646717 107339.3357376747 109508.88983355192 109177.636704713 113808.45396908335 114566.27576553843 123915.01773231583 120841.42671391032 127751.0059707162 0.990326208172865 0.8128709512492693 0.8402230175962734 0.8572056947923694 0.8546127357285884 0.8908615091075772 0.896793531252505 0.9699729312559803 0.9459136998233131 1.0 16.96297512609481 1.8443880742171925 1.3480161945175588 0.981438964655438 0.865560468746554 0.4758060849702481 0.0457719563185219 0.3411425395360758 1.1587315816423567 0.03374187186417141 0.014095231286959716 69.88566051781882 -1.8443880742171925 -0.115878495908884 EVS(ph)SRPSTPGLSVVSGISATSEDIPNKIEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 EVS(0.4)S(0.4)RPS(0.098)T(0.098)PGLS(0.003)VVSGISATSEDIPNKIEDLR 97.099 3.1627e-05 64714000.0 32919.0 30380.0 24049.0 22340.0 26875.0 35003.0 30288.0 31203.0 49503.0 32550.0 True False 32741.767761644718 31391.179934902193 27434.890162344745 25168.24170942821 30297.37194939503 32583.324998199092 28822.853728603972 33531.526305623505 37303.648956215424 30472.631132542963 1.074464742451414 1.030143403054496 0.9003124818140797 0.8259293921800543 0.9942486363456562 1.0692652320200218 0.9458603559120589 1.1003817215446756 1.2241689532472744 1.0 14.895226453186883 1.6431758064319517 4.95471951126088 1.127046287285911 0.9748655527119892 0.31616493114852784 0.08754153134256036 0.16999095806753137 9.232688269720915 0.049614869938834634 0.023506740109045944 43.97195819768912 -1.6431758064319517 -0.1521807345739219 EVSAYIK ddPTM_BT-474_Trastuzumab_2h_R1 3 EVSAYIK 7 0 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ;; 91.906 0.037363 344183000.0 725640.0 772720.0 714560.0 670640.0 665270.0 717070.0 763130.0 720280.0 985650.0 783900.0 False True 721733.2348661831 798439.5180808963 815163.8369331394 755542.9552377311 749988.1911357783 667500.6387012157 726214.4864602984 774030.9511077309 742749.7645333356 733870.8308694443 0.9834608551086826 1.0879837220604 1.1107729080434825 1.0295312518997533 1.0219621213820955 0.9095614795186814 0.9895671771010777 1.0547236905310808 1.0120987690073089 1.0 19.485166630062423 3.354754576453261 3.1141354425791774 0.9993038140087176 1.0638220020777838 0.268645137276354 0.04611883804012569 0.35067105418169947 6.776474570220973 0.014306550992381836 0.02009022533266593 2263.364899154869 -3.354754576453261 0.06451818806906617 EVSDS(ph)EAGGGPQGER ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 EVS(0.156)DS(0.844)EAGGGPQGER 347.24 3.1330999999999996e-82 2111100000.0 710100.0 724060.0 695440.0 609400.0 654570.0 652170.0 654000.0 623240.0 685830.0 661850.0 True False 706276.9004995268 748159.8993964875 793351.9071271581 686549.9775168096 737925.6095596474 607087.0229430483 622363.521477383 669749.3335485945 516816.38615116675 619610.1663617071 1.1398730021599202 1.2074687279416545 1.28040492263974 1.1080353660885953 1.190951423364593 0.9797886734296282 1.0044436893794744 1.080920504389558 0.8340992679088275 1.0 19.241001290028613 2.740680246136134 24.77387985066804 0.994817950962035 1.1875616381554017 0.6709402589851893 0.07156523383737413 106.96701169652879 1250214.8333831653 0.022331441812944212 0.022644337351103036 550.4023077204058 -2.740680246136134 0.19274368719336676 EVSEDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVSEDRR 7 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ;;; 145.34 0.0036768 244159000.0 269282.0 352539.0 307659.0 346718.0 320707.0 275040.0 363922.0 274618.0 345846.0 358787.0 False True 267832.2156320429 364273.0475006742 350974.7129800337 390612.46325020236 361547.1354706843 256027.13217451877 346317.70254295436 295111.3896419483 260616.88739897116 335888.9064869951 0.7973833325823543 1.0845045503602486 1.0449130834680385 1.1629215961180488 1.0763890336600999 0.7622375351787082 1.03104834918495 0.8785982029846358 0.7759020389351908 1.0 18.357624622434084 2.766219445477509 24.835250203613036 0.8936903328864959 1.0439263472966855 0.26791756141446543 0.11798109932857827 886.7668489517788 796238.8757585398 0.035307572232149156 0.03744142460346089 583.7399888455323 -2.766219445477509 0.15023601441018963 EVSGHSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSGHSVR 8 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 0 ; 135.0 0.00085258 209290000.0 213840.0 348230.0 315980.0 332680.0 337490.0 286490.0 302940.0 285530.0 316680.0 301840.0 False True 212688.70919985746 359820.6250405194 360467.2374526045 374797.2538895507 380467.35104004917 266685.6206249195 288285.63485681766 306837.69849196164 238638.45729459453 282576.3127817747 0.752677063077508 1.273357350792521 1.2756456261462463 1.326357649018499 1.34642336894626 0.9437649532601584 1.0202045317204351 1.085857818269868 0.8445097713440969 1.0 18.108281009943994 2.724321657543085 24.880143802761427 0.9959979130120998 1.2110413260503488 0.28614792248539167 0.1685629540388538 1009.0437489329464 1763128.846686146 0.054730375204998995 0.051832242629635684 530.0558811814284 -2.724321657543085 0.21504341303824892 EVSHLNALEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSHLNALEER 11 0 A0A087WYJ2;M0R2B7;P28340;M0R3H8 A0A087WYJ2 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit 0 ; 161.1 2.6697e-05 404610000.0 239170.0 298960.0 279140.0 259220.0 253720.0 312960.0 289790.0 184110.0 314760.0 268670.0 False True 237882.3352942853 308910.7028748636 318440.485671625 292037.22542157455 286029.7380837397 291325.81182859704 275771.75059469556 197849.22309163687 237191.61556791258 251523.25058004027 0.9457667819802045 1.2281596320120765 1.2660479098344437 1.1610744722331021 1.1371900507174733 1.1582460514356732 1.0964065944549284 0.7866041116889783 0.9430206353524878 1.0 17.940332242046576 1.9017962541615339 5.553698909149099 0.8937414207649045 1.155995439953089 0.5664392295052528 0.09345936427975185 0.1460013467970939 6.549254433694452 0.041038079386917774 0.024644314480419864 79.76204021436597 -1.9017962541615339 0.2622540191881845 EVSLDY(ph)ERS(ph)MNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSLDYERSMNK 12 1 Q9P2D7-3;Q9P2D7-6;Q9P2D7-8;Q9P2D7 Q9P2D7-3 DNAH1 Dynein heavy chain 1, axonemal 2 EVSLDY(1)ERS(1)MNK 56.359 0.088099 89070000.0 63192.0 86898.0 80186.0 82980.0 93702.0 77028.0 76160.0 65611.0 73857.0 72235.0 True False 62851.78129329119 89790.34739904963 91475.49181079362 93485.25949186902 105634.39428473367 71703.23566440825 72475.84984054671 70507.22598590725 55655.93198309597 67624.90045650511 0.9294177273313121 1.3277704927166711 1.3526894855782996 1.3824088295996344 1.5620635826691598 1.060308187965855 1.0717331833584232 1.0426222517141595 0.8230094478126836 1.0 16.045266944851015 2.5546460392056183 8.478385197209288 1.0051821841745028 1.3182407017524616 0.48980647334953686 0.15971823202810395 0.3155922351558977 32.09216284171955 0.05270845699854353 0.049593739511296836 358.629523526895 -2.5546460392056183 0.3130585175779588 EVSMDDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSMDDHK 8 0 P05023-4;P05023;P05023-3;P05023-2;Q5TC02;Q5TC01 P05023-4 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 0 ; 121.67 0.0014233 338190000.0 185631.0 224046.0 231991.0 184202.0 265470.0 380600.0 236189.0 198285.0 317490.0 261630.0 False True 184631.58332154274 231503.23567133298 264653.3162980796 207521.95431334348 299276.03093603364 354290.0178360303 224763.63574040006 213082.03357082818 239248.84364803796 244932.5494072875 0.7538058284549476 0.9451713797596435 1.0805150925775868 0.8472616433198693 1.2218712117285022 1.446479933734316 0.9176552331827917 0.8699620939987992 0.9767948123962963 1.0 17.902024982712433 4.715384629978369 2.0637478987066857 1.0394653852157598 0.6793695829678336 0.2144616841838567 0.1695314484107492 1.187666424047171 5.780311364774386 0.047457416259475096 0.786659138427781 51925.9714207988 -4.715384629978369 -0.36009580224792626 EVSQVDTICECLLEHEEQVLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVSQVDTICECLLEHEEQVLR 21 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 0 ;;; 288.92 7.2437e-47 462424000.0 291273.0 341204.0 315611.0 356892.0 319653.0 351552.0 346877.0 295799.0 390038.0 344493.0 False True 289704.8185314724 352560.76887782617 360046.28546001046 402074.49060703925 360358.91481823125 327250.03770439397 330097.234311178 317873.0234168874 293918.36114143295 322507.16180470394 0.8982895663783889 1.0931874098700523 1.1163977985643574 1.2467149205527341 1.1173671703961994 1.014706265352836 1.0235345859112122 0.9856308977391864 0.9113545246459268 1.0 18.29897167275691 2.405111117456208 1.9743056698942087 0.9748624968724142 1.102206694467685 0.29147854634617565 0.08395267613060528 0.43155691511851346 3.4352666328060653 0.038361436512517125 0.029263845078442194 254.16229153916882 -2.405111117456208 0.12734419759527071 EVSS(ph)RPS(ph)TPGLSVVSGISATSEDIPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.125)S(0.875)RPS(0.542)T(0.453)PGLS(0.005)VVSGISATSEDIPNK;EVS(0.112)S(0.886)RPS(0.559)T(0.442)PGLSVVSGISATSEDIPNK 198.73 3.1262000000000004e-25 945350000.0 995520.0 755950.0 707510.0 599710.0 702110.0 830950.0 707960.0 748370.0 983740.0 828980.0 True False 990160.2309326695 781111.3387685745 807121.2582128379 675633.2245103485 791519.5467679906 773508.3823459008 673713.270130166 804217.1695458596 741310.4584406469 776073.7866745149 1.275858362869744 1.0064910736331472 1.0400058242803971 0.8705785920246639 1.0199024375757633 0.9966943809046729 0.868104659245141 1.0362637977916243 0.955206155869754 1.0 19.565834300314034 5.112587021926801 1.549402496544552 0.9694991208503289 1.7375290695824355 0.7069107033527088 0.05809099931958921 1.5695690807487426 1.6435635234606751 0.014484440480907615 2.4303396210564814 129594.63472590278 -5.112587021926801 0.7680299487321066 EVSS(ph)RPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.479)S(0.521)RPS(0.521)T(0.479)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.475)S(0.525)RPS(0.525)T(0.475)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.482)S(0.512)RPS(0.499)T(0.47)PGLS(0.031)VVS(0.003)GIS(0.001)AT(0.001)S(0.001)EDIPNKIEDLR;EVS(0.47)S(0.53)RPS(0.53)T(0.47)PGLSVVSGISATSEDIPNKIEDLR 137.71 8.704499999999999e-09 3387620000.0 156995.0 125155.0 120400.0 113896.0 126497.0 155999.0 150282.0 155353.0 209298.0 147190.0 True False 156149.75636378425 129320.7085172049 137351.2734644394 128315.22192197989 142605.64314353955 145215.15631214625 143012.28552700934 166946.2297265496 157719.31234951346 137796.20818430118 1.1331934196254179 0.9384925044108589 0.9967710670291691 0.9311955939336113 1.0349025203422564 1.0538400020261973 1.0378535622383143 1.2115444388953034 1.1445838345461967 1.0 17.07217666357502 1.9170062030169759 6.438526765247696 1.1394913568665503 1.0105233646736524 0.2737332383650627 0.07341146719984863 0.243749328696812 15.55143463287821 0.030918158551619005 0.018994426809360393 82.60497479403404 -1.9170062030169759 -0.1289679921928979 EVSS(ph)RPST(ph)PGLSVVSGISATSEDIPNKIEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.133)S(0.867)RPS(0.216)T(0.784)PGLSVVSGISATSEDIPNKIEDLR 204.08 1.0931999999999997e-26 527340000.0 110060.0 90335.0 88975.0 84230.0 92043.0 104810.0 102680.0 100780.0 146350.0 111040.0 True False 109467.44918881565 93341.74586633936 101501.90661543616 94893.50936370349 103764.13046839686 97564.73139620166 97712.97612430852 108300.7153504707 110284.00348952854 103953.33213387322 1.0530441587754131 0.8979197102227754 0.9764180188540752 0.9128472114919577 0.9981799365004221 0.9385435694409084 0.9399696394385103 1.0418205278018295 1.06089916720998 1.0 16.665576477712147 1.7025230558493722 6.42256362560634 1.0383255051554903 0.9567777875752952 0.3727461285504302 0.044078125357606884 0.12105769392001739 11.455603799692351 0.020419077826385836 0.01045087435470632 50.410738047268474 -1.7025230558493722 -0.08154771758019508 EVSSEDIADMHSNLSNYHQYIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSEDIADMHSNLSNYHQYIVK 23 0 Q8TBX8;Q8TBX8-3;F8VNT5 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 177.47 3.1524e-17 322620000.0 149440.0 168910.0 157490.0 167720.0 143570.0 186230.0 180340.0 123740.0 217160.0 197490.0 False True 148635.43164434473 174532.06724174862 179663.22307238035 188953.3348032811 161852.78849394026 173356.3584382659 171616.2652342987 132974.10713898847 163643.82779491632 184886.01912030458 0.8039300773068636 0.9439981891122947 0.9717512656025885 1.0219990440722828 0.8754192948933759 0.9376390884670603 0.9282273805821343 0.7192220794827259 0.8851065568588717 1.0 17.49627660827353 1.9385046712666167 24.999810484492436 0.8336150525564042 0.9309688351770192 0.043933905460859624 0.08532856343918895 349.0162278383278 141885.19150027758 0.03406135245555943 0.02198374250940676 86.79699131169006 -1.9385046712666167 0.097353782620615 EVSSRPS(ph)TPGLSVVSGISATSEDIPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 EVS(0.042)S(0.034)RPS(0.554)T(0.369)PGLS(0.001)VVSGISATSEDIPNK 185.7 7.1395e-18 460120000.0 114410.0 136640.0 104100.0 103050.0 115950.0 131240.0 146480.0 145410.0 140590.0 135110.0 True False 113794.02927214601 141187.9797993757 118756.37514657926 116096.11943404547 130715.5452105062 122167.68770572938 139394.20279205978 156261.23257701876 105943.47830948276 126487.16412650926 0.8996488304404714 1.1162237747552237 0.9388808419153277 0.917849018402603 1.0334293294754227 0.9658504762075332 1.1020422803743248 1.2353920151196545 0.8375828412400864 1.0 16.94863146259267 2.239215319106775 24.99829055149028 1.0831823364403812 0.9828195288147284 0.030007030354914477 0.11156927835186203 33.11576450523012 1264514.6675512905 0.03972108468207878 0.03137862880734813 173.46638145455591 -2.239215319106775 -0.10036280762565275 EVSSRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 EVSSRPS(0.614)T(0.386)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.006)S(0.028)RPS(0.483)T(0.483)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.003)S(0.019)RPS(0.489)T(0.489)PGLSVVSGISATSEDIPNKIEDLR 262.95 9.707099999999999e-60 4335260000.0 478626.0 510154.0 432898.0 454876.0 484929.0 593440.0 580125.0 522881.0 647101.0 613629.0 True False 476049.1307963474 527134.1674953944 493846.27558313095 512463.2549605127 546681.8337506301 552416.8896074987 552062.137457289 561901.0353559189 487631.6292591549 574466.6718657825 0.828680155195445 0.9176061785853318 0.8596604464088257 0.8920678606055737 0.9516336813327895 0.9616169512729618 0.9609994182330425 0.978126430783091 0.848842331749899 1.0 19.131863670652503 3.3105215168494753 3.695043405372522 0.9527401144817126 0.8738106500332481 0.4376537350945895 0.04243502942839108 0.21253047209505585 5.741321181844361 0.011677582992537657 0.015863588956996553 2044.1912116732847 -3.3105215168494753 -0.07892946444846449 EVSSRPST(ph)PGLSVVSGISATSEDIPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 EVS(0.073)S(0.073)RPS(0.418)T(0.435)PGLS(0.001)VVSGISATSEDIPNK 230.29 9.3792e-35 433730000.0 216890.0 203190.0 199430.0 170830.0 194620.0 243160.0 260870.0 229060.0 259800.0 258050.0 True False 215722.28833874434 209953.05631905107 227508.01052336543 192457.06048440535 219403.703396884 226350.92153707097 248250.721479824 246153.62034311172 195775.771141643 241581.02807228005 0.8929603870805662 0.8690792401803753 0.941746180727801 0.7966563517844745 0.9081992288369569 0.9369565290091725 1.027608514877039 1.0189277788380946 0.8103938157058744 1.0 17.882147635305298 2.696110875617154 2.999883125481261 0.973612720089051 0.8780089070994109 0.25340456220427154 0.06649121982815612 0.32937978957626934 5.949659476168325 0.0225366277745917 0.02189117007471182 496.71911792468444 -2.696110875617154 -0.09560381298964005 EVSSRPST(ph)PGLSVVSGISATSEDIPNKIEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 EVSSRPS(0.251)T(0.749)PGLSVVSGISATSEDIPNKIEDLR 235.02 6.786899999999999e-45 695250000.0 162600.0 147870.0 163270.0 152360.0 155650.0 193950.0 197610.0 169420.0 207430.0 193040.0 True False 161724.57966655848 152791.76356069723 186256.99683171944 171648.7603781771 175471.1048901707 180542.693009191 188050.84935649182 182062.98069732814 156311.655919596 180720.02193014123 0.8948902171397168 0.8454611831541284 1.0306384142854883 0.9498048890483718 0.9709555311917817 0.999018764390042 1.0405645558696555 1.0074311565085248 0.864938230142643 1.0 17.463396825349637 4.244485723516767 24.99999180236504 0.9863086195394986 0.8701756671015846 0.46573623294464905 0.04819195273782503 114.04255559265167 481169.54243732675 0.011622167760585592 0.030123887679480064 17558.431737382696 -4.244485723516767 -0.116132952437914 EVSSSFDHVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVSSSFDHVIK 11 0 E9PIE4;Q9Y6C9 E9PIE4 MTCH2 Mitochondrial carrier homolog 2 0 111.86 0.0016042 156580000.0 219330.0 303300.0 367030.0 271100.0 403520.0 688230.0 349650.0 287000.0 477330.0 498620.0 False True 218149.1516498541 313395.1571512784 418704.6337180503 305421.2322034909 454905.8801495775 640654.2800191568 332736.0937072895 308417.39735647076 359698.4173943058 466797.64470994036 0.4673313032361336 0.6713726187415031 0.8969724643281477 0.6542904311209071 0.9745247974253337 1.3724453995847554 0.7128058538385422 0.660708983542785 0.7705660503446111 1.0 18.83243775618931 4.730492885351623 1.3550867800101134 0.8683910752843818 0.2887425548778021 0.295969697334572 0.20217734697438855 1.8893479297497666 3.0992345181726013 0.061031425362745396 1.5013183954126286 53764.162536022035 -4.730492885351623 -0.5796485204065797 EVSTYIKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVSTYIKK 8 1 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ; 140.5 0.0010399 4077600000.0 2303500.0 4573500.0 3042900.0 4454800.0 4878600.0 5376600.0 6117900.0 5435400.0 10852700.0 7279200.0 False True 2291098.2119429074 4725726.182760872 3471313.87063906 5018777.223239071 5499860.792272322 5004928.297155027 5821953.804352425 5841017.14840195 8178197.50372946 6814635.223963336 0.33620261931062295 0.693467225676744 0.5093910028276132 0.736470413792771 0.8070660587865843 0.7344381808662976 0.8543309528703467 0.857128365119573 1.200093216284156 1.0 22.700205003366573 4.420262446279127 0.26337064712841063 1.0819036141908782 1.293802190929201e-18 0.7541089291829297 0.11288284446507578 3.815266217034538 0.25519879621955144 0.15022971317815026 1.332229976852109 26318.57956068147 -4.420262446279127 -1.0819036141908782 down EVTEEDLNNHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVTEEDLNNHFK 12 0 H7C126;B9A058;Q6NVY1 H7C126 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial 0 ; 165.58 5.421e-05 450180000.0 470940.0 472480.0 439360.0 442850.0 495260.0 742330.0 482640.0 412380.0 677410.0 571490.0 False True 468404.51136635314 488206.21117980924 501218.0690144196 498914.764593567 558328.4253639963 691014.4743568586 459292.8593361539 443153.88962321036 510471.3823289476 535017.0189227951 0.8754946007314688 0.9125059463767435 0.9368264023144042 0.9325212973562664 1.043571336269146 1.2915747535436337 0.8584640172024725 0.828298678265334 0.9541217648678396 1.0 19.029225258894513 4.000981907400424 1.7810634988836895 0.9781215799275663 0.8892898505625789 0.09207278257823548 0.1193132456928615 1.2601547674759668 7.656625065896445 0.03821200410390516 0.11558899147304855 10022.63483161935 -4.000981907400424 -0.0888317293649874 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPTLPS(ph)PTSVITQAPPSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPTLPSPTSVITQAPPSNR 50 2 P17544;K7ELQ4;P17544-1 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPT(0.118)LPS(0.62)PT(0.118)S(0.144)VIT(0.001)QAPPSNR 128.21 2.2642e-11 1216300000.0 284840.0 344540.0 342910.0 375880.0 341390.0 431800.0 440730.0 291250.0 476900.0 449600.0 True False 283306.4530886992 356007.8056211717 391188.7473728484 423466.3694601551 384863.99292293837 401950.6823478665 419410.2061479008 312984.55393753335 359374.3851326007 420906.1430780746 0.6730869999113988 0.8458128052436983 0.929396621565312 1.0060826538747039 0.914370101867459 0.9549651126695672 0.9964459132878554 0.7435970205820381 0.8538112143113572 1.0 18.683139040242175 4.682688077145986 2.625978241902983 0.9137478595773406 0.6400189004520873 0.4996964818186215 0.0758480494497172 0.38844777157386823 3.802316952640919 0.02081070205333138 0.2200853428200035 48160.177305922174 -4.682688077145986 -0.2737289591252533 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPTLPSPTS(ph)VITQAPPSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPTLPSPTSVITQAPPSNR 50 2 P17544;K7ELQ4;P17544-1 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPT(0.047)LPS(0.27)PT(0.306)S(0.348)VIT(0.028)QAPPSNR 57.205 0.0027643 1377000000.0 61496.0 64107.0 64676.0 65169.0 66127.0 73123.0 87862.0 53351.0 78861.0 84151.0 True False 61164.912368847916 66240.76274150022 73781.81862613026 73419.3887180719 74547.88148456367 68068.17912302694 83611.77939456553 57332.32253088872 59426.76323326062 78780.41113470425 0.7763974760713532 0.84082783762371 0.9365503119801312 0.9319498040259565 0.9462743391513468 0.8640241672087648 1.0613270252118927 0.7277484555501736 0.7543342612372077 1.0 16.265549325575424 -0.4526820774684137 10.942813289480323 1.0000000000001106 0.8735913658573182 0.13688089510274615 0.09695415018233453 0.0 0.0 0.09566038094040004 0.02254736801794842 0.35262891635103494 0.4526820774684137 -0.12640863414279235 EVTWEVLEGEVEK ddPTM_BT-474_Trastuzumab_2h_R1 5 EVTWEVLEGEVEK 13 0 P05455 P05455 SSB Lupus La protein 0 ;;;; 265.6 5.7105e-24 368490000.0 729764.0 607302.0 555214.0 498329.0 532096.0 676083.0 638794.0 662498.0 841276.0 665059.0 False True 725835.0317084026 627515.679948189 633383.3051934004 561417.4003051769 599855.2716199189 629346.9735381958 607893.0937899441 711936.9648566793 633954.8023208509 622614.3652343433 1.1657858736285476 1.0078721516680729 1.017296324274503 0.901709680427735 0.9634459227328328 1.0108134483876203 0.9763557150839937 1.1434637628200504 1.0182142233133975 1.0 19.247979338126754 -0.5395472819646564 7.92807726936246 0.9999970366003659 1.0233111615049124 0.008254046251617408 0.07467796533919387 0.0 0.0 0.0753684293696404 0.01776450916488403 0.28870394479371847 0.5395472819646564 0.02331412490454654 EVTYELDHPGFQIR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVTYELDHPGFQIR 14 0 A5YKK6-3;A5YKK6-2;A5YKK6;A5YKK6-4 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 ;;; 237.32 2.7259e-17 1455110000.0 935930.0 1208430.0 1046040.0 1141450.0 1099110.0 1096560.0 1095260.0 1043550.0 1248780.0 1132450.0 False True 930891.0568715979 1248651.8620386382 1193313.3396573295 1285957.4529644945 1239075.1435646345 1020757.388224586 1042278.0895004871 1121425.0000395281 941034.9017946927 1060176.071460778 0.878053261086111 1.177777819790034 1.1255803368709374 1.2129659285675263 1.1687446801712456 0.9628187389837253 0.9831179155594129 1.0577724117979361 0.8876213368012307 1.0 20.0158724532908 2.733194770857865 24.978120316009218 0.9885055026310696 1.122538343453338 0.33154763143163213 0.09430920799816155 530.2970682444699 2468535.4766991776 0.02984564139065995 0.028905018507030623 540.9968929269647 -2.733194770857865 0.1340328408222684 EVVAEEMAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVVAEEMAHR 10 0 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 0 82.008 0.019301 376750000.0 651020.0 1215100.0 1228500.0 1128900.0 1141900.0 1116500.0 1054700.0 958960.0 742750.0 1216100.0 False True 647514.9806551217 1255543.86895654 1401462.1216865778 1271818.6242512763 1287314.1964284363 1039318.9829582972 1003680.1316547353 1030522.4647002122 559709.2148400907 1138487.4568444088 0.56875021043259 1.1028174806919535 1.2309860009973816 1.117112548412634 1.1307232141112353 0.9128945397773808 0.8815908560263594 0.9051680442370025 0.4916252800812221 1.0 20.118686966158347 2.1065509765215675 1.4688094915654155 0.7813096641050401 1.044902466218494 0.18310752020988053 0.2073697621998326 0.6470214586429545 2.650438912540636 0.13086279614586155 0.0684569505808316 127.80592165141972 -2.1065509765215675 0.26359280211345393 EVVAGSHELGQDYEHVTMLQER ddPTM_BT-474_Trastuzumab_2h_R1 1 EVVAGSHELGQDYEHVTMLQER 22 0 Q01082;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 281.96 5.864999999999998e-46 167550000.0 72578.0 97576.0 96314.0 95767.0 76824.0 107640.0 96251.0 59624.0 91790.0 99515.0 False True 72187.24811217384 100823.75817406233 109874.17402370456 107891.09238078816 86607.08102847732 100199.10015730516 91594.97141547356 64073.44564453725 69169.58442298471 93163.86750092209 0.7748416853933138 1.0822195436773212 1.1793646718521757 1.158078719517739 0.9296209287105875 1.0755146050190911 0.9831598222837518 0.6877499546044832 0.742450762065026 1.0 16.507482910774765 1.893793919537241 5.42833251033936 0.783177732812455 1.0420537286657712 0.3543482153597368 0.13310670657963558 0.21241652254948767 8.815347908478984 0.05942635413010538 0.03548024059414928 78.30579796418499 -1.893793919537241 0.2588759958533162 EVVEAHVDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVVEAHVDQK 10 0 P0DPI2-2;A0A0B4J2D5-2;P0DPI2;A0A0B4J2D5;A0A096LNH5;A0A096LPI6;H7C1F6;H7C2G3 P0DPI2-2 C21orf33 0 ; 89.82700000000001 0.011248 759260000.0 1380130.0 1583190.0 1741250.0 1532070.0 1866480.0 2718600.0 1589120.0 1317930.0 2060300.0 1883420.0 False True 1372699.5334268573 1635885.5220914332 1986402.8647836824 1726029.9049133256 2104165.1645063004 2530669.580896041 1512248.194572078 1416280.628912938 1552566.6716055726 1763218.5231230138 0.7785192336770209 0.9277837662424007 1.126577811390822 0.978908673132687 1.193366072844676 1.4352557823710457 0.8576635140456573 0.8032360200052917 0.8805299236850492 1.0 20.749779854356174 EVVEEAENGR ddPTM_BT-474_Trastuzumab_2h_R1 6 EVVEEAENGR 10 0 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 0 ;;;;; 218.58 1.5626e-08 34071700000.0 6455910.0 7306150.0 6505990.0 6776070.0 6625930.0 7557580.0 7262200.0 6440700.0 8270250.0 7618600.0 False True 6421152.097879034 7549330.786089059 7421976.840921172 7633919.767233897 7469702.910536007 7035142.283229709 6910899.6417019265 6921337.739211914 6232157.703172341 7132374.42538838 0.9002825307407192 1.0584596847883478 1.0406039277049062 1.070319547451157 1.047295397721532 0.9863674932975246 0.9689479589156043 0.970411440343729 0.8737844273834489 1.0 22.765951010855773 2.3013372871319455 1.8299231802443758 0.9476796196718871 1.028240513963536 0.27206561500390236 0.05358806756151184 0.4365647337354461 2.9647459503279174 0.025602644790500905 0.017327705020483915 200.1415630272659 -2.3013372871319455 0.08056089429164892 EVVESCR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVVESCR 7 0 O60701-2;O60701;E7ER95;E7ER83;E7ETF4;E7EV97 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 111.04 0.036273 0.0 131060.0 167810.0 143290.0 170610.0 148430.0 154420.0 160330.0 139010.0 170540.0 161200.0 False True 130354.38752213473 173395.4544067128 163463.98650099282 192209.20850696278 167331.68068646366 143745.3088655803 152574.225379922 149383.63207847704 128512.70211892176 150912.0779897365 0.8637770366597172 1.148983280307792 1.083173651032159 1.273650267542104 1.1088024425576053 0.9525103012321942 1.0110140116836674 0.9898719444353326 0.8515733387997074 1.0 17.203348748549214 2.7420851141060387 23.726889037433956 0.9670060888663836 1.1078315245215415 0.29448301452289305 0.10317163454716974 190.85924314963205 1284864.5904375608 0.032002543667281544 0.03270365388621361 552.1856473850146 -2.7420851141060387 0.14082543565515793 EVVESEGERK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVVESEGERK 10 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 ; 86.014 0.022202 787980000.0 411100.0 362790.0 324710.0 329160.0 368680.0 443070.0 433820.0 400140.0 532140.0 442490.0 False True 408886.68327750417 374865.24583881407 370426.34557008446 370831.6222504649 415629.2126624364 412441.6137745928 412834.46924666414 430000.4786697497 401001.22731067723 414249.9093652515 0.9870531629180914 0.9049253539082581 0.8942098409573169 0.8951881795669775 1.0033296405527243 0.9956347713064573 0.9965831250977069 1.0380219016309082 0.9680176585315975 1.0 18.660141856232805 3.229131557485716 24.98609676001828 1.0041057206882416 0.917376057651551 0.6377407642588195 0.029389382399234415 114.34439842147742 303001.3499121946 0.008564965586207788 0.010367060816586315 1694.851130905802 -3.229131557485716 -0.08672966303669061 EVVETPLLHPER ddPTM_BT-474_Trastuzumab_2h_R1 4 EVVETPLLHPER 12 0 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 ;;; 216.68 3.8474000000000006e-11 2579990000.0 1115830.0 1376230.0 1247720.0 1269180.0 1190750.0 1228140.0 1245880.0 1120300.0 1466160.0 1262090.0 False True 1109822.4952603674 1422036.9836013974 1423388.1306233432 1429858.0578680418 1342384.9543717997 1143241.5725305895 1185612.0246762123 1203902.4747681331 1104844.5135374581 1181542.3356703895 0.9392998132654051 1.2035429799428683 1.2046865251051153 1.210162357032058 1.136129374162586 0.9675840958182267 1.0034443869533578 1.018924534841197 0.9350866915069834 1.0 20.17223989255678 2.7724076196457674 6.791353038312597 0.9903871939806127 1.1505853921481035 0.49803900045074867 0.07665017092515276 0.17516548680582836 26.895720660281935 0.023543895477549377 0.02464665967203722 592.1171220990143 -2.7724076196457674 0.1601981981674908 EVVHTVSLHEIDVINSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EVVHTVSLHEIDVINSR 17 0 Q9Y230;Q9Y230-2;M0R0Y3 Q9Y230 RUVBL2 RuvB-like 2 0 ;;; 254.71 2.7713e-27 982200000.0 246025.0 349400.0 383218.0 416771.0 388005.0 365906.0 406928.0 272115.0 361140.0 385221.0 False True 244700.42873594718 361029.56778324005 437171.7634094318 469534.1658675068 437415.13686418725 340611.77947007475 387243.3380240806 292421.6030719723 272141.8860280716 360635.8659757092 0.6785249383721281 1.0010916878898488 1.2122248635106019 1.3019619238290971 1.2128997089092894 0.9444756099023628 1.0737793285656274 0.8108500309053246 0.7546168079865961 1.0 18.460183357319657 1.7522264042119182 6.3820460833436545 0.8385960192984099 1.0753428178431275 0.22122916186983954 0.17414213624421299 0.217068616942399 24.378584160289485 0.09025872976224696 0.048016361413954094 56.52315616902262 -1.7522264042119182 0.23674679854471758 EVVNKDVLDVYIEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 EVVNKDVLDVYIEHR 15 1 P33993;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 ;; 123.36 6.2015e-05 290788000.0 731900.0 837310.0 767700.0 787720.0 821790.0 980830.0 982590.0 822620.0 1263330.0 1068440.0 False True 727959.5317217341 865179.3571854158 875785.4870319784 887445.2712332486 926440.085369056 913027.5307254699 935058.3678416846 884008.0815797203 951999.2492547045 1000251.2444624942 0.7277766818604843 0.8649620402625322 0.8755655060470332 0.8872223615279138 0.9262073808934853 0.9127981952335429 0.9348234986142484 0.8837860352323385 0.9517601247937273 1.0 19.93193099293771 5.846076191812218 0.708874862824555 0.9255497049369091 1.678068161169941e-23 0.7932962797626048 0.03101309601458493 5.203868068828007 0.6026167458530389 0.010813271184069074 5.529290133606754 701578.3712220362 -5.846076191812218 -0.9255497049369091 EVVTEHLINK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVVTEHLINK 10 0 Q13618;Q13618-2;A0A087X1R9;H7C1L6 Q13618 CUL3 Cullin-3 0 ; 173.37 2.2844e-05 310160000.0 1680600.0 1775430.0 1600640.0 1528600.0 1558510.0 1892360.0 1913840.0 1783360.0 2263400.0 1952370.0 False True 1671551.836332213 1834524.114279903 1825996.1989877122 1722120.603269112 1756977.010487505 1761545.6073362874 1821260.2476212187 1916443.3789185889 1705615.3980061389 1827768.0750919494 0.914531695301726 1.0036963328553672 0.99903057935611 0.9421986447500881 0.9612691207548949 0.963768670293505 0.9964394675892326 1.048515621338981 0.9331683933260156 1.0 20.801651588220018 2.175926306973705 5.289503735431578 1.0045583305283312 0.9663393187906194 0.12506649570050177 0.03582773209967907 0.33083362370655567 18.08285386267814 0.013507499463473722 0.009978056471858837 149.94303838740407 -2.175926306973705 -0.038219011737711805 EVVVYLDDNQKPPVGEGLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVVVYLDDNQKPPVGEGLNR 20 1 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 164.94 1.5870999999999998e-11 154570000.0 165250.0 132010.0 106130.0 110400.0 115160.0 160470.0 136450.0 162310.0 239150.0 173160.0 False True 164360.31236100086 136403.8730482699 121072.1815015032 124376.62868043296 129824.94339320296 149377.0866057482 129849.39221038081 174422.39639348004 180214.68694581994 162108.78055026554 1.0138890182449876 0.8414342060020292 0.746857641458613 0.7672417759127312 0.8008507802755802 0.9214620336955185 0.8010015976285629 1.0759589690417564 1.1116898562440314 1.0 17.30660271034624 1.7060812827006064 6.024730501917775 1.0704205388922727 0.8368188524209826 0.6236664457535243 0.07824873824589047 0.08781980339292476 7.535817676680049 0.040912657167795706 0.020789928202611878 50.825455875264026 -1.7060812827006064 -0.2336016864712901 EVWALVQAGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EVWALVQAGIR 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 93.111 0.0095897 0.0 82483.0 120410.0 119960.0 115980.0 88745.0 100280.0 126980.0 119200.0 111710.0 127580.0 False True 82038.92069272287 124417.77406061783 136849.32528898807 130663.05610830274 100046.14971717438 93347.87963372876 120837.4922892939 128095.3092853354 84180.56733730924 119437.73517326682 0.6868760578364119 1.041695690898078 1.1457796406676874 1.0939847102655746 0.8376427229806284 0.7815610326025537 1.0117195550802809 1.0724860874120659 0.7048071299676736 1.0 16.8658991883133 3.2359508573923166 24.998071752767338 0.918409336017646 1.0066059648668064 0.06662936486262139 0.15506223816414347 215.0230795767496 2059646.2726387703 0.046093248221514165 0.057540764161260374 1721.6737479086596 -3.2359508573923166 0.08819662884916046 EVWEMELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVWEMELDR 9 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 0 ; 145.17 0.00022753 117272000.0 156738.0 152219.0 138572.0 139804.0 130514.0 167175.0 181235.0 142069.0 200061.0 169350.0 False True 155894.14002322892 157285.51739667132 158081.7331105842 157503.17206557293 147134.18428291517 155618.58573762074 172467.97066506665 152670.91019176453 150758.64723005486 158541.93801217043 0.9832990688637965 0.9920751529137819 0.9970972670868266 0.9934480052431441 0.9280458289315251 0.9815610158977287 1.0878381633749625 0.9629686132639856 0.9509070541226884 1.0 17.274504991515403 EVWYFGLHYVDNK ddPTM_BT-474_Trastuzumab_2h_R1 2 EVWYFGLHYVDNK 13 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 187.11 7.2348000000000014e-06 3395100000.0 1335290.0 1176050.0 1243020.0 1127430.0 1097140.0 1480370.0 1465440.0 1276030.0 1830470.0 1384250.0 False True 1328100.9470046673 1215194.1133127634 1418026.4114764745 1270162.5224019978 1236854.2757417404 1378035.506316143 1394551.0686755597 1371253.8381490503 1379375.195541352 1295905.979883952 1.024843597931077 0.9377178068285352 1.0942355645302742 0.9801347799288189 0.9544321076846178 1.063376145883319 1.0761205599193557 1.0581429975898757 1.0644099317026645 1.0 20.305529621439007 2.7099493862993507 24.688098651993165 1.0580937449044592 0.9992322033851264 0.2675392898173944 0.044277550105867626 761.34583250439 656950.2887854383 0.013818241759049022 0.013030279943771261 512.8016174018455 -2.7099493862993507 -0.05886154151933276 EVYELLDS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 3 EVYELLDSPGK 11 0 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK 236.28 1.5867000000000001e-15 445200000.0 1306310.0 918390.0 806400.0 698640.0 758480.0 1199420.0 1076070.0 1002290.0 1584540.0 1184490.0 True False 1299276.9721046856 948958.0559715223 919934.1106455488 787087.7523668263 855067.9321368235 1116506.9185309822 1024016.3831134072 1077085.9693254947 1194051.3487481892 1108894.8341070903 1.1716863783127782 0.8557692098328216 0.8295954515707549 0.7097947687713857 0.7710992114282375 1.0068645683880577 0.9234567170997515 0.971314804791918 1.0767940403561074 1.0 20.080691118316583 2.7193083440895656 24.38600565241776 0.9860423711825356 0.8560552454656623 0.21940006780305676 0.11913479308630148 967.2415512828957 1225160.3055747503 0.039959145984377754 0.03773095464898137 523.9723188769464 -2.7193083440895656 -0.12998712571687332 EVYFAER ddPTM_BT-474_Trastuzumab_2h_R1 9 EVYFAER 7 0 P50238 P50238 CRIP1 Cysteine-rich protein 1 0 ;;;;;;;; 133.7 0.0075516 45197530000.0 7837870.0 9641480.0 9483350.0 8576710.0 6522910.0 7550290.0 8688260.0 6770690.0 10347740.0 7903830.0 False True 7795671.778789219 9962390.833402256 10818523.249244131 9662520.606610121 7353563.924183382 7028356.22377089 8267975.671423688 7275953.268667177 7797678.1296121115 7399400.802590694 1.05355446836449 1.3463780513030463 1.4620809897818112 1.3058517661628841 0.9938053256432245 0.9498547803100633 1.117384487204543 0.9833165499184345 1.0538256188098327 1.0 22.81897701653447 3.241636272232745 24.892115532487296 1.0172173984838748 1.3080039802629635 0.6269252208849412 0.10385887205399133 47.15469588613816 381631.85361248965 0.029410662906664775 0.03818763204793439 1744.3606143056593 -3.241636272232745 0.29078658177908867 EVYPHVSTIINICLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EVYPHVSTIINICLK 15 0 Q86VP6;Q86VP6-2;H0YH27;Q86VP6-3 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 177.84 7.3631e-07 235440000.0 231220.0 377530.0 414790.0 443310.0 412450.0 446250.0 454220.0 429850.0 441460.0 470020.0 False True 229975.13721095724 390095.85782829585 473188.8265806882 499433.00054640207 464973.06271732075 415401.7878595078 432247.6433110967 461927.58973407256 332668.0982609309 440022.92119563225 0.5226435399912072 0.8865353122249305 1.075373131233567 1.135015874148875 1.0567019132864575 0.944045793639059 0.9823298344017886 1.0497807443278655 0.7560244756273233 1.0 18.747219151445783 4.692881255764594 2.9348585476158426 1.0071755873944712 0.4655098402388099 0.6846268604802402 0.09699612196493775 0.1880750985465248 2.461670909850449 0.023794571924294763 0.22702788537973173 49303.89794440771 -4.692881255764594 -0.5416657471556613 EVYQQQQYGSGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 EVYQQQQYGSGGR 13 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 ;;;; 357.65 6.605e-76 4401530000.0 870280.0 967768.0 874529.0 984600.0 953338.0 909560.0 958479.0 859040.0 997138.0 938341.0 False True 865594.5091771968 999979.572851889 997655.0816576646 1109250.259046687 1074739.943422973 846684.2580739366 912113.7090246509 923145.9269167335 751406.7008646497 878455.2740258533 0.9853597955081798 1.1383386296596578 1.1356925174864432 1.2627282137690727 1.2234429858876832 0.9638330864515002 1.0383154794489935 1.0508741357839066 0.855372747005143 1.0 19.744609308668505 2.729988503427235 24.817764825995912 0.9949913780957615 1.154080322400023 0.49257691255502534 0.0843547446395552 544.2625288982931 1575732.9937045667 0.02822404590160002 0.02700748422378366 537.0175803402013 -2.729988503427235 0.15908894430426135 EVYSWGCGEYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 EVYSWGCGEYGR 12 0 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 0 ; 146.11 0.00014996 178960000.0 126758.0 132219.0 108310.0 119114.0 122837.0 124461.0 121006.0 126998.0 167139.0 115782.0 False True 126075.54901213764 136619.8294869268 123559.10655260333 134193.8201869665 138479.5638380592 115857.3040196801 115152.47749219013 136475.23564277712 125949.83299785643 108392.69363404282 1.1631369678642358 1.26041548472063 1.1399209892298239 1.2380338165599414 1.2775728621118703 1.0688663611482838 1.0623638331285483 1.259081503256548 1.1619771478610017 1.0 16.725907987464517 2.7394505742237074 24.987905262838964 1.1332286707628163 1.2153117006194334 0.3010306804061601 0.07642819344353519 131.82376554229444 3701339.4147098954 0.024735842117306714 0.02492375115814088 548.8460894950916 -2.7394505742237074 0.08208302985661708 EWAHATIIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 EWAHATIIPK 10 0 P30153;B3KQV6;E9PH38 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ; 148.96 2.4195e-05 2475400000.0 5713200.0 7185200.0 6524300.0 6499600.0 6812900.0 8227900.0 7763400.0 7408400.0 8859200.0 7801600.0 False True 5682440.765996188 7424355.038454879 7442864.729767793 7322448.693581002 7680482.431777983 7659124.639393267 7387854.682931992 7961252.427092948 6675968.867198029 7303695.208714197 0.7780227136554582 1.016520381299143 1.0190546726111394 1.002567670792783 1.0515885743170432 1.0486643295649851 1.0115228623063819 1.0900307583473918 0.9140535956693243 1.0 22.80019513064146 4.739168435338731 5.476143816424739 1.0248613162566138 0.7688036360798807 0.7270923304782869 0.043741657792715466 0.06987403332662818 8.052268360146828 0.009921017696499234 0.06714612039709911 54848.96480901699 -4.739168435338731 -0.25605768017673314 EWAMNVGDK ddPTM_BT-474_Trastuzumab_2h_R1 3 EWAMNVGDK 9 0 P21964-2;P21964;E7EMS6;E7EUU8;F8WBW9 P21964-2 COMT Catechol O-methyltransferase 0 ;; 133.83 0.0027993 291280000.0 600590.0 578390.0 547410.0 511230.0 484900.0 663550.0 634590.0 605480.0 747000.0 598160.0 False True 597356.4901718213 597641.361505862 624480.5698269844 575951.6655824071 546649.1407725269 617680.3503286862 603892.4573307837 650663.9921651423 562911.859287173 559984.9166894597 1.0667367501669442 1.0672454626796397 1.1151739113239203 1.028512819572606 0.9761854730020734 1.1030303351388686 1.0784084344644465 1.1619312820276708 1.0052268239920048 1.0 19.095028442838522 EWAMNVGDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 EWAMNVGDKK 10 1 P21964-2;P21964;E7EMS6;E7EUU8;F8WBW9 P21964-2 COMT Catechol O-methyltransferase 0 ; 105.17 0.0041443 6460400000.0 2655000.0 2178860.0 2063820.0 1836290.0 1809590.0 2562800.0 2542300.0 2306900.0 3345600.0 2243220.0 False True 2640705.774998228 2251382.0379513144 2354387.9169549793 2068764.1257209464 2040030.5602197493 2385639.6681822906 2419319.2364708735 2479052.5922008404 2521121.7087431904 2100055.779082736 1.2574455408758893 1.0720582092989335 1.12110732505559 0.9850996084611346 0.9714173216440924 1.1359887160827187 1.1520261797653706 1.1804698793684627 1.2005022599182427 1.0 21.00199621680478 2.5021365179428625 24.367968952222704 1.1508873779023152 1.0753527555163203 0.06337347783350544 0.08961884885813257 1105.1845292689916 1076586.2293398783 0.02915852502002716 0.027371414767802582 317.78728594984915 -2.5021365179428625 -0.07553462238599495 EWDENLKDDSLPSNPIDFSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 EWDENLKDDSLPSNPIDFSYR 21 1 J3QT87;A0A1W2PPJ5;Q96SW2-2;Q96SW2 J3QT87 CRBN Protein cereblon 0 85.22399999999998 0.0026728000000000003 149220000.0 56769.0 50379.0 30577.0 36367.0 31916.0 41618.0 52823.0 38585.0 69661.0 40048.0 False True 56463.36201162884 52055.83456025138 34881.97581995158 40971.05847120748 35980.313419047154 38741.04561823416 50267.74968654408 41464.40863065997 52493.97995957663 37492.10235318221 1.506006824576921 1.3884480008583209 0.93038196394956 1.0927917054437997 0.959677136270094 1.0333121694080178 1.3407556933727809 1.1059504809855136 1.4001343393623034 1.0 15.194299105934855 4.399304126694567 6.297003025873811 1.1156688649889248 1.477938977778597 0.4716776719080952 0.1456817564937528 0.15701269536607357 9.740622601497423 0.03570246253607382 0.10082410001981347 25078.648398156514 -4.399304126694567 0.36227011278967214 EWDFDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 EWDFDLK 7 0 Q96EY4;H0Y9X1 Q96EY4 TMA16 Translation machinery-associated protein 16 0 ;;; 119.21 0.011243 426781000.0 1229170.0 1202850.0 1094560.0 1051440.0 1005740.0 1412130.0 1315730.0 1266660.0 1775480.0 1366570.0 False True 1222552.2852936261 1242886.1351118193 1248664.5339139295 1184552.1961934294 1133815.0275119834 1314512.776896463 1252083.113323299 1361184.6011691527 1337936.744213105 1279354.3326205614 0.9556010044452775 0.971494841906665 0.9760114942951196 0.9258984520473352 0.8862400342128338 1.027481396966769 0.9786836073463702 1.0639621615858168 1.045790607104559 1.0 20.28698446068783 2.706164062021034 24.30158603668912 1.0264269201011593 0.945507905186698 0.6063711660128779 0.032198815954449476 334.7203307589321 251082.945829959 0.011074786585103778 0.010442296741301448 508.3514445724579 -2.706164062021034 -0.0809190149144613 EWDRDK ddPTM_BT-474_Trastuzumab_2h_R1 2 EWDRDK 6 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ; 89.67299999999999 0.045508 1311950000.0 888900.0 951940.0 872720.0 802430.0 702150.0 815090.0 980030.0 794380.0 1355410.0 927450.0 False True 884114.2611660743 983624.7474401183 995591.3901817757 904017.5557249977 791564.6405308922 758744.7468154761 932622.2048218349 853660.6693799058 1021387.3670634909 868259.3469701067 1.0182605741605837 1.1328697478150886 1.146652084605837 1.0411837878620869 0.9116684355810856 0.8738687921566354 1.0741286092413862 0.9831862707367969 1.1763620750271706 1.0 19.727766511002816 3.4829970229929477 24.400990047020933 0.9980634215727595 1.1011710850947756 0.2059151005652765 0.08404598829821054 281.7455205041685 1170039.791267689 0.023462949526142952 0.03282710876380081 3040.864181052374 -3.4829970229929477 0.10310766352201606 EWEEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 EWEEAER 7 0 H7C0V9;E9PG40;P05067-7;P05067-11;P05067-8;P05067-9;P05067;A0A0A0MRG2;P05067-10;P05067-3;P05067-4;P05067-5;P05067-6;H7C2L2 H7C0V9 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 0 ; 161.6 0.0030313 1312800000.0 985630.0 1266830.0 1053350.0 1206900.0 1156990.0 1050400.0 1122120.0 1088670.0 1276090.0 1052580.0 False True 980323.4775937886 1308995.6707350942 1201652.5241176705 1359693.416253754 1304325.8184829992 977788.3203756333 1067838.7686853244 1169912.083554247 961614.7182299438 985403.4432409231 0.9948447859787999 1.3283855254553392 1.2194523292566537 1.3798342451309256 1.3236464997454878 0.9922720760542055 1.0836564211438893 1.1872417247766942 0.9758588980237983 1.0 19.910354987225457 2.7415743495623164 24.99728758740474 1.072815349297322 1.2592312383345916 0.4305451638518005 0.1137365691894434 280.0097016893835 2322538.89029274 0.03540720370168275 0.03608040759455677 551.5366152692583 -2.7415743495623164 0.18641588903726958 EWEEYVQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 EWEEYVQIR 9 0 Q86TU7;Q6NXR6;Q86TU7-3;Q86TU7-2;C9K0W5 Q86TU7 SETD3 Histone-lysine N-methyltransferase setd3 0 94.309 0.020493 54444000.0 76113.0 118290.0 101890.0 100380.0 111240.0 89333.0 85902.0 77881.0 75144.0 89375.0 False True 75703.21606494923 122227.21114218504 116235.22635624361 113088.09770780685 125405.75462886336 83157.61997726257 81746.59208249273 83692.8756917047 56625.76807801249 83671.01098221279 0.9047723360369413 1.46080715061718 1.3891935210506001 1.351580390630725 1.4987957376960912 0.9938641711278072 0.97700017153935 1.0002613176204667 0.6767668683966336 1.0 16.35244024657436 2.61842798932901 5.534240286845718 0.9324787322379724 1.3331847119320903 0.5553495439087295 0.17558100282852343 0.17237193295330258 7.145382892515888 0.056159314146345 0.05274438919898508 415.3631738741167 -2.61842798932901 0.4007059796941179 EWETIR ddPTM_BT-474_Trastuzumab_2h_R1 3 EWETIR 6 0 Q9NRN7;E9PLW6;E9PNF3 Q9NRN7 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0 ;; 125.86 0.041275 370722000.0 421430.0 520209.0 498687.0 495515.0 486713.0 525816.0 486372.0 493174.0 518326.0 498536.0 False True 419161.0677052747 537523.8420920186 568897.7949348923 558247.1481937029 548693.0155760337 489467.57755772525 462844.32823852863 529977.1481668287 390591.5025125613 466719.00566185644 0.8981015613685163 1.1517076347249957 1.21892999435096 1.196109739311023 1.1756388938949027 1.0487414731774398 0.9916980509121691 1.1355379612520076 0.8368879299411893 1.0 18.832194692147734 2.580969574287726 4.7649634840056 1.0165321555856892 1.1377202147427228 0.25023476275663037 0.10793121153446938 0.360282302605973 13.035104387230765 0.0361839320820341 0.033723305051773914 381.03912769889166 -2.580969574287726 0.12118805915703357 EWGSGS(ph)PPCVPGPQEGLRPMSDSVGGAFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EWGSGSPPCVPGPQEGLRPMSDSVGGAFR 29 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 EWGS(0.02)GS(0.979)PPCVPGPQEGLRPMSDSVGGAFR;EWGS(0.001)GS(0.999)PPCVPGPQEGLRPMSDSVGGAFR;EWGS(0.18)GS(0.82)PPCVPGPQEGLRPMSDSVGGAFR 165.04 2.9691e-12 1058250000.0 639335.0 652614.0 548473.0 597654.0 609868.0 691260.0 618309.0 585583.0 714590.0 696472.0 True False 635892.8913967966 674335.8624765069 625693.2309872219 673316.9351211543 687531.0748291587 643474.823251011 588399.0315002446 629282.1769902228 538488.8695154228 652022.560680322 0.9752620994177016 1.0342216713680936 0.9596189897698816 1.0326589534242707 1.054459026865247 0.9868904268889219 0.9024212764759361 0.9651233177171479 0.8258745969672616 1.0 19.31456235855346 2.3800699108386256 5.0600028089819675 0.9250474413784886 1.0117296158991813 0.41408852778132166 0.0494493901940762 0.20006049170468704 8.3851970902457 0.01660048356522354 0.013778028015605607 239.9219103801865 -2.3800699108386256 0.08668217452069271 EWHGPPSQGPSYHDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 EWHGPPSQGPSYHDTR 16 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YKH2 Q9NWH9 SLTM SAFB-like transcription modulator 0 ; 119.46 0.00011149 406240000.0 316420.0 327210.0 295820.0 335470.0 347070.0 390660.0 356880.0 322170.0 415720.0 374530.0 False True 314716.42987756664 338100.98704737815 337468.8846864659 377940.4676034859 391267.3072549409 363654.5937147235 339616.3509860071 346211.9613461116 313271.3763626017 350627.1747487351 0.8975813985413348 0.9642749090673494 0.9624721327669522 1.0778983912879085 1.1159069673801787 1.0371546186496357 0.968596775847113 0.9874076691123913 0.8934600593553448 1.0 18.41957828843485 4.449332296657247 1.8539476688903596 1.01083503785169 0.8965192783361255 0.2516105497060863 0.05844709879089051 0.7389347204916366 3.9594772187285447 0.016919694173160648 0.12054681384148315 28140.531552498793 -4.449332296657247 -0.11431575951556439 EWHHFLVVNMK ddPTM_BT-474_Trastuzumab_2h_R1 3 EWHHFLVVNMK 11 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ;; 91.855 0.0063876 2919810000.0 3576500.0 3417820.0 3187720.0 2739770.0 2232690.0 3063270.0 3252480.0 2014460.0 4453700.0 2964090.0 False True 3557244.5213865056 3531580.072584183 3636523.2678410616 3086624.6010850547 2517009.837309577 2851513.3550619455 3095145.116719819 2164789.2344206106 3356145.3115224675 2774919.2385148783 1.2819272258497596 1.27267850666323 1.3104969749632458 1.11232952593496 0.9070569702982301 1.0276022867563022 1.1154000713823744 0.7801269328397442 1.2094569329947988 1.0 21.40401435307896 3.5462070020651804 3.586123644314769 0.9897819695785084 1.2852263542274827 0.5686051006111383 0.10879073277722597 0.1600214860005146 3.993111010885264 0.02958182146223276 0.046390285189635144 3517.280481918683 -3.5462070020651804 0.29544438464897427 EWLEGEDLSEELKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EWLEGEDLSEELKK 14 1 Q14008;Q14008-3;Q14008-2 Q14008 CKAP5 Cytoskeleton-associated protein 5 0 97.797 0.004541 49941000.0 133620.0 131570.0 156930.0 132980.0 122110.0 160830.0 149450.0 136250.0 165510.0 139440.0 False True 132900.6047665777 135949.22791425535 179024.3799399874 149815.25436525347 137659.98469732574 149712.2006530973 142220.5325455581 146417.66686348116 124722.27822037472 130540.81981941 1.0180769888716206 1.0414307808264673 1.371405359546918 1.1476506319824535 1.0545359289742808 1.1468611952966816 1.0894717280181463 1.1216236198457707 0.9554274164427292 1.0 16.99414147925957 1.2453339699381065 23.759733031597055 0.9777136742235316 1.1266155213638833 0.2807921783378634 0.09349058350772549 98.93330572862435 347059.1770141495 0.06736359963206535 0.023288926293092902 17.592759669327684 -1.2453339699381065 0.1489018471403517 EWLEVLEDTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EWLEVLEDTKR 11 1 Q8IYI6 Q8IYI6 EXOC8 Exocyst complex component 8 0 72.089 0.07576000000000001 24797000.0 27873.0 29012.0 27109.0 28140.0 31449.0 34059.0 35222.0 28464.0 36421.0 31711.0 False True 27722.93486498141 29977.646881875644 30925.711564347952 31702.521114740804 35453.84373717302 31704.581496262108 33518.177298893606 30588.128217263325 27445.532566396407 29687.176830847002 0.9338353398486645 1.0097843608600339 1.0417195188534745 1.0678860201283848 1.1942477366299802 1.067955423208814 1.1290456310438362 1.0303481665349927 0.9244911607047331 1.0 14.857552283052707 4.584099830431965 1.676469373477788 1.0670026625020115 0.9113128852799642 0.23264972791587235 0.06813730233015325 0.9911010808368731 3.463893681087382 0.01864443720243667 0.2260798623122122 38379.54576723163 -4.584099830431965 -0.15568977722204724 EWLSPLPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 EWLSPLPDR 9 0 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 0 ; 101.64 0.008942299999999999 187688000.0 152415.0 214160.0 169152.0 202529.0 190566.0 157947.0 174674.0 180204.0 208403.0 170168.0 False True 151594.41457489837 221288.18613754594 192967.131304459 228169.15063423364 214833.45052682463 147028.49565724508 166224.35130052047 193651.73753737097 157044.87310712802 159307.73255184534 0.951582275050982 1.3890611748273398 1.2112854047537178 1.4322540844649705 1.3485437717651836 0.9229212750824628 1.0434167170537323 1.2155827870712343 0.9857956710043507 1.0 17.281456769193667 2.7501190085644556 24.839433588945745 1.0615128520021724 1.2794878262108245 0.389749166275135 0.1432046731501528 763.5915179034774 1640987.2520331792 0.04373929029338631 0.04602806360513059 562.4954432068035 -2.7501190085644556 0.21797497420865208 EWLTNFMEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 EWLTNFMEDR 10 0 Q02880;Q02880-2;E9PCY5;P11388;P11388-2;P11388-3;P11388-4 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2;DNA topoisomerase 2-alpha 0 ;;; 188.3 2.6424e-06 631830000.0 285755.0 469277.0 501730.0 502765.0 465328.0 519020.0 501440.0 456524.0 543529.0 478910.0 False True 284216.5268303654 484896.6012610632 572369.2228846614 566414.9974503438 524584.7625848592 483141.3690416618 477183.43151317956 490592.13906190015 409583.56086545915 448345.5537845207 0.633922929381748 1.0815242777987026 1.276625179068348 1.263344740834808 1.1700456448308614 1.0776093684066381 1.064320650634842 1.0942277333203656 0.9135443797939592 1.0 18.774251565126292 -3.1528396106547945 9.691322541688068 1.004696524017765 1.0770182695373125 0.0 0.1768280578438774 0.0 0.0 0.0 0.039095428006757964 0.0007033320195552919 3.1528396106547945 0.07232174551954751 EWNGVVSESDS(ph)PVKRPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 EWNGVVSESDSPVKRPGR 18 2 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 1 EWNGVVSES(0.002)DS(0.998)PVKRPGR;EWNGVVSESDS(1)PVKRPGR;EWNGVVSESDS(1)PVKRPGR;EWNGVVSES(0.045)DS(0.955)PVKRPGR;EWNGVVSES(0.003)DS(0.997)PVKRPGR 288.95 1.3344e-41 6314800000.0 4526470.0 3484410.0 3213430.0 3090890.0 3143450.0 4971280.0 5123290.0 4055980.0 6313800.0 5280540.0 True False 4502099.988458095 3600386.4804796726 3665853.012365732 3482196.3570839097 3543749.724812121 4627627.114734373 4875456.889831602 4358657.823449117 4757848.590585475 4943531.416302257 0.9107052447591502 0.7283025386683489 0.7415454062407428 0.704394503411203 0.716845798354981 0.9360974423008361 0.9862295754314079 0.8816891117705037 0.9624392342072597 1.0 22.23711056996631 2.7296458628869624 23.62980529609451 0.9434963169398114 0.7544234951242605 0.7062112805889834 0.06199969883699739 172.5654619173208 457407.45410075167 0.01987955875256534 0.01902382922983813 536.5940625779231 -2.7296458628869624 -0.18907282181555085 EWQELDDAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 EWQELDDAEK 10 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;; 152.7 4.0878e-05 909170000.0 1398100.0 1242290.0 1054130.0 1033970.0 1055270.0 1412080.0 1336620.0 1253660.0 1858150.0 1385560.0 False True 1390572.784943514 1283638.871669837 1202542.3413377872 1164870.4959846667 1189652.379424674 1314466.2332787751 1271962.5842157512 1347214.4751564905 1400233.8304343517 1297132.3745624023 1.0720361408084003 0.9895974357303993 0.9270775789120785 0.8980351726843954 0.917140303298661 1.0133632149318765 0.9805958197943041 1.0386098609334178 1.0794841435568452 1.0 20.30689428590659 1.9875348495841945 1.651576676137537 1.0443505960075339 0.960587350436605 0.27112626848652477 0.05089226635862937 0.4868068918234032 2.475405950702276 0.034832798431890015 0.01691124599556668 97.1705922148039 -1.9875348495841945 -0.08376324557092885 EWSGLLEELAR ddPTM_BT-474_Trastuzumab_2h_R1 4 EWSGLLEELAR 11 0 Q01813;Q01813-2;Q5VSR5;V9GYV7 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 ;;; 139.43 9.0896e-05 420017000.0 220047.0 249253.0 245560.0 231817.0 210775.0 281517.0 268384.0 222397.0 287685.0 256609.0 False True 218862.29140152028 257549.2354283795 280132.7135542174 261165.0084312675 237615.94688869725 262056.3924097368 255401.24059355707 238993.39344908323 216788.8865314996 240231.9939259824 0.9110455598555857 1.0720854921086518 1.166092446622779 1.0871366638689048 0.9891103304163092 1.0908471770436985 1.063144156694834 0.9948441485388463 0.90241471582796 1.0 17.874068775374642 1.5699237471438796 3.697859103630577 0.9500462614957709 1.059157345088918 0.27658947832977443 0.06726209562389891 0.22804280708374003 7.111309007285077 0.04260821900766061 0.017784877492952048 37.14700011549186 -1.5699237471438796 0.10911108359314714 EWSLESS(ph)PAQNWTPPQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 EWSLESSPAQNWTPPQPR 18 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;F8W1U7;E5RHT6;E5RHC5;Q8N6T3-3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 EWSLES(0.01)S(0.559)PAQNWT(0.431)PPQPR;EWSLES(0.002)S(0.989)PAQNWT(0.009)PPQPR 224.55 4.767999999999999e-19 246297000.0 118675.0 121757.0 117165.0 121524.0 125574.0 132252.0 126081.0 113753.0 126677.0 127873.0 True False 118036.06698603215 125809.60814133928 133660.81358356358 136908.9259398634 141565.10456458922 123109.73052772123 119981.98035380733 122241.82648603001 95459.15073483426 119712.03566241694 0.9859999985205251 1.050935333654481 1.1165194280087394 1.1436521414266232 1.1825469659859185 1.028382232801434 1.0022549503055118 1.0211323014399905 0.7974064613187698 1.0 16.86920868033217 1.8102874835799634 1.4259413984326155 0.9159060584799011 1.0921887646975335 0.4526599091630834 0.07465079524131603 0.36859626935245865 1.4160989765579461 0.05820988987704507 0.02384683682385502 64.60817648309849 -1.8102874835799634 0.1762827062176323 EWSLESSPAQNWT(ph)PPQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EWSLESSPAQNWTPPQPR 18 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;F8W1U7;E5RHT6;E5RHC5;Q8N6T3-3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 EWSLESSPAQNWT(1)PPQPR 209.67 5.5498e-15 239600000.0 114280.0 136730.0 115720.0 129640.0 130130.0 137500.0 124280.0 110120.0 137410.0 127270.0 True False 113664.7291777015 141280.97539496972 132012.37014372865 146052.41070771136 146701.28415906156 127994.94864018442 118268.10160429553 118337.71357802961 103547.14669966594 119147.51963867106 0.9539831758344886 1.185765140755099 1.1079741361303346 1.225811591803443 1.2312575587301402 1.0742560905031362 0.9926190823187719 0.9932033326157583 0.8690667419152737 1.0 16.862389392878672 2.3094076638293415 2.6365035980303277 0.9616615352144403 1.1467616139244048 0.5149451801508694 0.08101888680124988 0.22184351439592645 3.161327297518411 0.032992974108439495 0.02487879905350861 203.89551074218497 -2.3094076638293415 0.18510007870996448 EWSQHINGASHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 EWSQHINGASHSR 13 0 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;; 259.0 3.4069e-24 6668090000.0 1073830.0 1592110.0 1626290.0 1711000.0 1635560.0 1602050.0 1573430.0 1143640.0 1330900.0 1491970.0 False True 1068048.6185937293 1645102.4188991822 1855257.4960339153 1927612.4245672177 1843838.8712763742 1491304.0543200532 1497317.1798137005 1228984.2240862518 1002917.5281463152 1396751.1972602184 0.7646663347693906 1.1778063424080927 1.3282662650821955 1.3800685679370128 1.320091133548434 1.0676948459004751 1.0719999257926152 0.879887718368849 0.718035918002846 1.0 20.41364362625878 1.9812741480604286 1.7490173377728273 0.8447078734332909 1.2031921451865775 0.3789511330967138 0.1753627545333555 0.36518207464255015 2.08023375522902 0.11431323371020392 0.05608341715665923 95.77984900715924 -1.9812741480604286 0.35848427175328657 EWTAWMMEADPDLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 EWTAWMMEADPDLSR 15 0 Q08AF3;B4E128 Q08AF3 SLFN5 Schlafen family member 5 0 ; 101.89 0.0037159 167883000.0 149499.0 200537.0 182410.0 200807.0 213812.0 201039.0 182343.0 170069.0 223304.0 212264.0 False True 148694.11399490046 207211.7528178234 208091.7424638572 226229.14561079445 241039.69083698778 187141.6471249021 173522.37247209562 182760.4123728836 168273.72132029824 198717.1297916465 0.7482702379548516 1.042747311392246 1.0471756646346488 1.138448134028476 1.2129789268278794 0.9417489439441824 0.8732129567996106 0.9197013491715919 0.8468002808652281 1.0 17.600356715420332 2.4954600166779652 24.651247826561725 0.9043728235359597 1.0475979968937936 0.21127337784570754 0.11785180089070597 910.538471465277 1223960.3918111871 0.03933225308909909 0.03644252934722285 312.9392350790154 -2.4954600166779652 0.1432251733578339 EWTDGLFTHVLR ddPTM_BT-474_Trastuzumab_2h_R1 4 EWTDGLFTHVLR 12 0 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 181.49 1.8094e-05 3154000000.0 7096763.0 7621306.0 7455537.0 6645656.0 7317860.0 8075381.0 7916459.0 7241619.0 10812546.0 8019923.0 False True 7058554.816532496 7874976.563033231 8505211.804910695 7486995.368205538 8249746.094645583 7517148.918872161 7533509.63435982 7782025.381976193 8147938.918993423 7508084.647938475 0.9401272291822912 1.0488662464927716 1.1328071277467557 0.9971911238722212 1.0987817108469533 1.001207268079506 1.003386347865474 1.0364861009009714 1.0852220374514072 1.0 22.84001348487291 -1.5870506776403563 2.5605120809087567 0.9965983065672244 1.0390937168195513 0.043414948082823535 0.05369876866254671 8561288.501509618 7579334.943884871 197355.65797518555 0.012410005424361896 0.025879109152975185 1.5870506776403563 0.04249541025232695 EWYGWHFPELGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EWYGWHFPELGK 12 0 Q9Y2X3;H7BZ72 Q9Y2X3 NOP58 Nucleolar protein 58 0 ; 99.671 0.003665 1379860000.0 2718500.0 3103000.0 2761000.0 2646500.0 2559000.0 3065000.0 2863500.0 2855400.0 4002000.0 3055400.0 False True 2703863.898053744 3206281.4791968856 3149724.800957786 2981546.628648243 2884873.481618677 2853123.764233928 2724981.5653677215 3068484.447427407 3015760.724052564 2860401.7561404533 0.9452741707521791 1.1209199799692224 1.1011476951432575 1.0423523976125824 1.0085553455648983 0.9974556050069185 0.9526569334248156 1.0727459668349946 1.0543136877813055 1.0 21.447786363490447 3.4520770273162347 5.823039806933403 1.0170533910854935 1.0638596228000932 0.10724797878317083 0.05301028966001613 0.34580418313445327 36.367346901962954 0.014850462360717501 0.020716333643405953 2831.894221541847 -3.4520770273162347 0.04680623171459963 EWYGYHFPELVK ddPTM_BT-474_Trastuzumab_2h_R1 1 EWYGYHFPELVK 12 0 O00567;A0A494C128;Q5JXT2 O00567 NOP56 Nucleolar protein 56 0 114.82 0.0010168 402810000.0 647090.0 692390.0 743610.0 613200.0 579570.0 763720.0 790800.0 741370.0 1120200.0 784110.0 False True 643606.1393384582 715435.7825914065 848303.824426013 690831.0571271877 653374.804119474 710925.8340035037 752545.9828506345 796694.7940005807 844141.7199109655 734067.4284896541 0.8767670575749148 0.9746186178883018 1.1556211207618905 0.9411002726937152 0.8900746426847934 0.9684748381579001 1.0251728296935883 1.0853155487906372 1.1499511995073664 1.0 19.4855530637719 1.9547661672795673 2.8289696250497407 1.0870173134991656 0.972265449043417 0.2820241718219545 0.07882611264720578 0.3661756108521068 5.417068620385779 0.04245329674457929 0.02337936769754178 90.10858445691692 -1.9547661672795673 -0.11475186445574859 EYAEDDNIYQQK ddPTM_BT-474_Trastuzumab_2h_R1 4 EYAEDDNIYQQK 12 0 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ;;; 280.09 1.2144e-27 2289880000.0 1477010.0 1352960.0 1314020.0 1243980.0 1254770.0 1588690.0 1532310.0 1410190.0 1857890.0 1510190.0 False True 1469057.9422712368 1397992.4557184076 1499022.5943334138 1401467.7404518565 1414557.5218955316 1478867.5996739978 1458186.3113073555 1515425.5385997246 1400037.9039505296 1413808.3812612928 1.039078535494785 0.9888132467224622 1.0602728164591153 0.9912713483856794 1.0005298742348454 1.0460169986788903 1.0313889283966984 1.0718747736152028 0.990260011545215 1.0 20.43115516886526 2.7299330653732343 24.690554252141922 1.035855136439338 1.0155697151191057 0.004293993687890074 0.029780327830194925 1345.1496260175302 3849564.9423632678 0.009253209781424916 0.008830550868417466 536.9490339718277 -2.7299330653732343 -0.020285421320232366 EYAENIGDGRS(ph)PEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EYAENIGDGRSPEFR 15 1 A0A087WUB9;Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 1 EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR 203.23 3.3379e-09 3854110000.0 1752570.0 2072940.0 1890990.0 2045030.0 2106380.0 1927960.0 1975290.0 1769500.0 2129380.0 1955200.0 True False 1743134.3578488308 2141936.5547813093 2157224.955220271 2303930.5883183493 2374615.007507599 1794684.6631296722 1879737.6763594227 1901549.075338934 1604622.831230149 1830417.4620690627 0.9523151925563641 1.1701901883956638 1.1785426002119714 1.2586913291976782 1.2973078856139122 0.9804783336698509 1.0269447900888191 1.0388608690333765 0.876643096169067 1.0 20.803741289839977 2.714740699814186 24.448733175110256 0.9947972313260133 1.1765869869714574 0.49366621936626587 0.09424692107757658 540.8333782542348 555109.8626943389 0.03145340853882026 0.029669568652954375 518.4903762454419 -2.714740699814186 0.18178975564544408 EYATEVDVDFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYATEVDVDFVR 12 0 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7EJ01;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7;H7C034 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 276.57 1.6929000000000002e-27 1356080000.0 628600.0 699220.0 654230.0 685180.0 672190.0 677300.0 723710.0 636630.0 731750.0 685180.0 False True 625215.6874440261 722493.1150125836 746339.8973309002 771923.7177469125 757789.4121177255 630479.845192705 688701.3824593222 684138.5633416375 551420.0174476424 641451.2257878897 0.974689364224191 1.1263414675451757 1.1635177661624647 1.2034020463500783 1.181367158799858 0.982896001825067 1.073661339743167 1.066548064509995 0.8596444987229347 1.0 19.290980045302668 1.7758876918919513 1.0460743307490332 0.9500164945208481 1.1241720116901182 0.37508319256089506 0.08196374058151802 0.5496715908294058 1.1168179278987918 0.07170962314300396 0.02933840578539115 59.688091383161755 -1.7758876918919513 0.17415551716927002 EYATEVDVDFVRK ddPTM_BT-474_Trastuzumab_2h_R1 2 EYATEVDVDFVRK 13 1 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7EJ01;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7;H7C034 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 145.0 6.6682e-05 575670000.0 364370.0 409010.0 397970.0 406040.0 350280.0 403740.0 432500.0 415400.0 638310.0 477110.0 False True 362408.2724053132 422623.65059823345 454000.71678274946 457444.62236778054 394886.08172778075 375830.40410173143 411578.32268955366 446399.2573584599 481007.0534157902 446660.4313255784 0.8113731304332791 0.9461855605700068 1.0164337043140061 1.024144048332639 0.8840856588882429 0.8414230984964554 0.9214568693002205 0.9994152740005569 1.076896496043492 1.0 18.76881892952833 1.5975889084625847 3.725313593557438 1.0384743276455743 0.925056191115615 0.3536022887734769 0.06585340477069311 0.22306427166106205 7.175771827296929 0.04333565469941267 0.018620757518964106 39.590310554700906 -1.5975889084625847 -0.11341813652995936 EYCIQAFESFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYCIQAFESFVR 12 0 Q86VP6;Q86VP6-2;H0YH27;Q86VP6-3 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 164.04 0.00013580000000000002 237441000.0 154760.0 168518.0 150793.0 163794.0 174052.0 179824.0 181879.0 156935.0 206870.0 184672.0 False True 153926.78935545235 174127.01975871765 172023.34368374792 184530.30360582296 196216.49051297162 167393.19014016373 173080.8179247479 168646.28659978305 155889.66041598047 172886.07485434657 0.8903365380070831 1.007177818719157 0.9950098284588537 1.0673520337672449 1.134946760045773 0.9682282987868717 1.0011264242684983 0.9754764039953162 0.9016900901204143 1.0 17.399462145917745 -0.20202363233979104 6.974239706055787 0.9999999992804998 0.9982535548517711 0.0 0.067785654536702 0.0 0.0 0.06685052564208598 0.015756820119865518 0.6280241836502907 0.20202363233979104 -0.0017464444287286218 EYDKDGNLRPWWK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYDKDGNLRPWWK 13 2 B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892;P42892-2 B4DKB2 ECE1 Endothelin-converting enzyme 1 0 78.814 0.01249 169170000.0 224810.0 250360.0 227590.0 222060.0 220500.0 282720.0 289990.0 228880.0 333770.0 259930.0 False True 223599.647938739 258693.08125418378 259632.6937522577 250172.77323167538 248579.36799410646 263176.23185129394 275962.07583062135 245960.1878290902 251516.8557888615 243341.0448627309 0.9188735425413824 1.0630885611595569 1.0669498600152594 1.0280747063151565 1.021526673127957 1.0815118838655111 1.1340547830157137 1.0107632601308043 1.0335981582175855 1.0 17.89262015774503 2.771035764288223 23.711951158658888 1.0559874842452042 1.0252029440616113 0.08100881672507565 0.0518969541225014 1010.4182930504248 737760.0943072411 0.01598487997742451 0.016952365366294537 590.2496854191463 -2.771035764288223 -0.03078454018359289 EYDLIVHQLATYPDVNNSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYDLIVHQLATYPDVNNSIK 20 0 O75436;S4R3Q6;O75436-2 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 184.88 3.8471e-17 239260000.0 552420.0 514400.0 478740.0 494170.0 397390.0 613410.0 539200.0 521640.0 706970.0 637350.0 False True 549445.8320996318 531521.4930386337 546142.4307173237 556731.8713316089 447995.26098493347 571006.410511822 513116.83605597157 560567.4256342482 532746.7164126541 596673.7773372121 0.9208479624354443 0.8908075287147111 0.9153116015163333 0.9330590558481507 0.7508210985644631 0.9569825794256681 0.8599621024839875 0.9394872825413974 0.8928609512389726 1.0 19.18658284905569 0.2669972197464579 0.7152006245031391 1.0021014666941943 0.8909650026294326 0.24515100358310737 0.05508582452944153 3.7214758268859502 2.52716293396602 0.07265168606180303 0.018762190789214078 1.849256780422938 -0.2669972197464579 -0.11113646406476174 EYDQALADLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYDQALADLKK 11 1 Q08752;H0Y8J0 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 0 95.264 0.012647 186620000.0 558280.0 541620.0 415420.0 426430.0 434570.0 624240.0 610630.0 526980.0 855790.0 646550.0 False True 555274.2825107388 559647.4942837968 473907.52510463 480415.9942771476 489909.91360180813 581087.7581029 581091.4940668732 566305.9235502188 644892.0214984874 605286.6254606958 0.9173741152600363 0.924599141535364 0.7829472933487163 0.7936999994200984 0.8093849971142644 0.9600208127193004 0.9600269849422045 0.9355995981559844 1.0654324651691207 1.0 19.2072589477471 2.662899675222947 5.592289874586128 0.9760074098456484 0.8438055247343929 0.6148154333345008 0.05472042472285867 0.17512012339796185 9.734884535364827 0.019309566459255564 0.018227472982105225 460.15026367623034 -2.662899675222947 -0.13220188511125552 EYDSISR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYDSISR 7 0 P54920;M0R0Y2;M0R213 P54920 NAPA Alpha-soluble NSF attachment protein 0 ; 152.39 0.004227000000000001 1009270000.0 1232120.0 1446930.0 1344320.0 1312140.0 1239100.0 1315810.0 1360170.0 1236480.0 1458390.0 1357220.0 False True 1225486.4028214002 1495090.190362344 1533588.5709610912 1478256.7894632535 1396892.0402788976 1224851.1517835716 1294373.380746015 1328752.4163182196 1098989.325924793 1270601.0576254982 0.9644934540756575 1.1766794788888115 1.2069788245155917 1.1634311026199071 1.099394677735758 0.9639934930265018 1.0187095099424384 1.0457668111825713 0.8649365741742625 1.0 20.27707969444945 2.8676880546596015 4.160233224942157 0.9904136005856268 1.1365447749597173 0.46949453141978414 0.07585021131952034 0.21702767469295206 6.299299475490106 0.023851189796596898 0.025528269281117025 737.3743980759108 -2.8676880546596015 0.1461311743740905 EYEEEER ddPTM_BT-474_Trastuzumab_2h_R1 4 EYEEEER 7 0 Q16543;K7EKQ2;K7EQA9;K7EL68;K7EIU0 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ;;; 153.73 0.004017 2438990000.0 2638250.0 2697110.0 2449230.0 2390220.0 2404100.0 2736160.0 2757280.0 2407960.0 3134200.0 2688690.0 False True 2624045.955137133 2786881.6759125767 2794060.2949112086 2692821.606925221 2710247.8847829094 2547015.699427832 2623899.832567522 2587654.2025731215 2361818.4061283204 2517095.5022966824 1.0424896285194047 1.1071815405373902 1.110033485961027 1.0698130462146551 1.0767362153362827 1.0118867945629593 1.0424315764631844 1.0280317930774017 0.9383110032866524 1.0 21.263328524828225 2.230756440180042 0.7489990332148375 0.9815309736980949 1.0889909781832132 0.6432350434347394 0.029546835710490434 0.4304775228262649 0.463798085199818 0.02441676665610456 0.015137977100969665 170.12041762360874 -2.230756440180042 0.10746000448511828 EYEELLASVR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYEELLASVR 10 0 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 ; 99.257 0.011293 43037000.0 110547.0 108730.0 95527.0 94170.0 98489.0 111235.0 102259.0 88502.0 132270.0 112522.0 False True 109951.82723492633 112349.01232132716 108976.37126443125 106091.91234453247 111030.99035996172 103545.58626902493 97312.34150268465 95106.46864405011 99673.83082719456 105340.7496250692 1.043772971298087 1.0665294553266604 1.0345129653273022 1.0071307895770327 1.054017469546641 0.9829585097653695 0.9237863015883272 0.9028459450170504 0.9462039256598757 1.0 16.684704105573708 2.4922821438961806 3.155536865109833 0.9315770354701034 1.0401389486798542 0.7242308576290197 0.028175826980158296 0.11739500526258506 2.4084675524367705 0.010095938589048349 0.008785141536977514 310.65771526279457 -2.4922821438961806 0.10856191320975084 EYELFEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 EYELFEFR 8 0 A0A2R8YE10;Q9NRW7;B7Z7G7;A0A2R8YF01;A0A087WU65;A0A1B0GXI6;A0A2R8YD95;Q9NRW7-2 A0A2R8YE10 VPS45 Vacuolar protein sorting-associated protein 45 0 ;; 140.09 0.0015242 304404000.0 346240.0 441850.0 410780.0 374850.0 362970.0 421300.0 412230.0 358660.0 509660.0 394280.0 False True 344375.88231088076 456556.71014603425 468614.25343623344 422305.97156576393 409192.0780082577 392176.52263352554 392288.8600284735 385425.03043857723 384061.12209411064 369116.7128399093 0.932972879123577 1.2368898352864581 1.2695557722943787 1.14409875488061 1.1085709852041559 1.0624729495887595 1.062777290711879 1.0441820081057698 1.0404869482587826 1.0 18.493717535741244 2.8892917623571543 1.8959315178437346 1.0429416256571329 1.1608867538014618 0.24886950829170207 0.08487038335062559 0.4593694104839363 3.287634510092704 0.030159070797526694 0.032938805689966884 774.9822619725619 -2.8892917623571543 0.11794512814432889 EYELRK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYELRK 6 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 89.90299999999998 0.079591 603030000.0 647810.0 801860.0 658730.0 720810.0 679170.0 750740.0 770810.0 679340.0 1101300.0 801110.0 False True 644322.2629384572 828549.4253653937 751473.4582161978 812064.4720936848 765658.2737440233 698843.110851869 733522.9755198503 730035.8004186234 829899.3716639393 749982.4739352226 0.8591164264914656 1.1047583832431758 1.0019880254976519 1.0827779319064785 1.0209015548410731 0.9318125891462223 0.9780534892648786 0.973403813809225 1.1065583537031016 1.0 19.5164973566291 2.946514485565339 24.977939890911966 0.9911394336955635 1.0222720356477186 0.0009931337053541434 0.07409565457196665 1221.2187667648536 570314.3010940811 0.021636934696729723 0.022949633114298547 884.1266580874712 -2.946514485565339 0.03113260195215517 EYFADMER ddPTM_BT-474_Trastuzumab_2h_R1 1 EYFADMER 8 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 111.95 0.0072944 280410000.0 359850.0 586990.0 595330.0 616410.0 462100.0 542120.0 598760.0 473670.0 755830.0 563920.0 False True 357912.6075830937 606527.6073070513 679147.2892988774 694447.4427980592 520945.69591871416 504644.5204132124 569795.6913146761 509017.6606475237 569565.8241031115 527930.1428037976 0.6779544840577705 1.1488785317046464 1.2864340075222391 1.315415405360074 0.9867701305176674 0.9558926068003676 1.0793013035560608 0.9641761653240122 1.0788658913813671 1.0 19.009987515198272 EYFDDS(ph)TEER ddPTM_BT-474_Trastuzumab_2h_R1 2 EYFDDSTEER 10 0 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 EYFDDS(0.874)T(0.126)EER;EYFDDS(0.506)T(0.494)EER 215.77 8.428200000000002e-09 286390000.0 423450.0 503620.0 417820.0 376940.0 384690.0 385790.0 364820.0 379340.0 410760.0 382760.0 True False 421170.1922497183 520382.68725528143 476645.4242434558 424660.5653514708 433677.99126373103 359121.245351976 347172.26285226137 407648.2770494891 309533.7019020065 358331.92910267686 1.1753632820396411 1.4522364461308452 1.330178489639636 1.1851038963089109 1.2102689044477095 1.0022027516534062 0.9688566233035354 1.137627556858549 0.8638183671690399 1.0 18.450937074797547 3.0930877225837623 1.3161297135491028 1.0067753511392423 1.3277698059352745 0.6826011111847698 0.09519140573452568 0.24745914295177224 0.9005309924059207 0.03590311813645775 0.04714146348218999 1239.0468347322112 -3.0930877225837623 0.32099445479603217 EYFGEFGEIEAIELPMDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYFGEFGEIEAIELPMDPK 19 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 95.654 0.0014019 6058400.0 41760.0 42234.0 39662.0 35916.0 32829.0 43671.0 40202.0 44114.0 62496.0 48968.0 False True 41535.16879997217 43639.73315900788 45246.06485171599 40462.96191744957 37009.57855727218 40652.12656047631 38257.27567344614 47406.010686353075 47094.69820349549 45842.820316386016 0.9060343258402423 0.9519425911806159 0.9869825752309415 0.8826455623409043 0.807314608958374 0.8867719368030603 0.83453145791232 1.0340989136178498 1.0273080468974114 1.0 15.484408183053088 1.6751613263830187 7.432880861435628 1.0227679914369288 0.8957925102415325 0.5801663767876399 0.04924142526917914 0.09776154968003688 10.139785097317347 0.027279171625907782 0.01412343901817883 47.33270520317645 -1.6751613263830187 -0.12697548119539626 EYFSWEGAFQHVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 EYFSWEGAFQHVGK 14 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 219.74 4.8997e-12 4239100000.0 1626860.0 1314740.0 922760.0 913700.0 852670.0 986210.0 826860.0 875920.0 1374090.0 1336810.0 False True 1618101.1665211364 1358500.3261228877 1052676.5872262975 1029374.3263162286 961252.4703289559 918035.6239886279 786861.6228880575 941285.598231636 1035463.9313626665 1251493.6412993798 1.292935987146624 1.0855031789953058 0.8411361851853615 0.8225166252123081 0.7680841824581089 0.7335519683787329 0.6287380110625956 0.7521297489409006 0.8273824949582504 1.0 20.25521953019528 4.507614476333521 1.3136969360563993 0.761160196738614 1.4119547403141552 0.762732720178479 0.09086174585545016 0.37702082482595395 0.7792070097050019 0.024695399490821137 0.29473777009847285 32182.107138903986 -4.507614476333521 0.6507945435755412 EYGDYFVVEYRDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYGDYFVVEYRDQK 14 1 Q685J3-2;Q685J3 Q685J3-2 MUC17 Mucin-17 0 54.524 0.084103 1216200000.0 3098600.0 1561600.0 842910.0 769120.0 774350.0 1131600.0 1100300.0 890940.0 2432100.0 1052000.0 False True 3081917.4818868246 1613576.9119928668 961584.40129494 866490.5131403505 872958.8825679641 1053375.1554998755 1047074.2854458183 957426.46690165 1832741.5434703256 984860.459337488 3.1292935488140308 1.6383812515717342 0.9763661361141397 0.879810439057768 0.8863782420051672 1.069567922554711 1.0631701938264242 0.9721442848316879 1.860914940887366 1.0 19.909559804200914 4.703667625293319 2.404299203270985 1.0670159496458604 3.51818907382979 0.8375696986036166 0.27071378255436707 0.17649281745331347 1.3207581862730216 0.066253119364982 0.8689712614756455 50543.76918413496 -4.703667625293319 2.4511731241839296 EYGEQIDPSTHR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYGEQIDPSTHR 12 0 Q9Y2B0;F8VXJ7;F8W031;F8W1K5 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ;;; 140.14 5.9424e-05 4505290000.0 3621220.0 4568320.0 4185540.0 4351670.0 4274550.0 4344040.0 4259440.0 4191290.0 5079180.0 4332050.0 False True 3601723.753875365 4720373.769592244 4774827.650634135 4902590.975813226 4818888.605257177 4043746.7395702335 4053394.6145590646 4504065.342739382 3827484.146525067 4055574.860145398 0.8880920407289038 1.1639222384919834 1.1773491589458542 1.2088522946503966 1.1882134522069734 0.99708349100114 0.9994624077568488 1.1105861679441185 0.9437587218863089 1.0 21.951474994025652 2.7300726010261824 24.90299119579797 1.023796186148228 1.1349672921023537 0.26569941019078314 0.09364112859567224 879.0527945377266 2579049.405376971 0.030518941337379438 0.029208615351840658 537.121579501784 -2.7300726010261824 0.1111711059541256 EYGMIYLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYGMIYLGK 9 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 131.06 0.00079953 129490000.0 200510.0 204070.0 212840.0 184800.0 211890.0 234610.0 219470.0 201070.0 263830.0 217610.0 False True 199430.47643875514 210862.34658708007 242806.0219615556 208195.66105202926 238872.93552957475 218391.96291253605 208853.39764318243 216074.864412772 198812.63164087667 203721.94349470595 0.9789346842940249 1.0350497495256796 1.1918501158804493 1.0219599198818736 1.1725439657205228 1.0720100111268147 1.0251885195107115 1.0606361823677923 0.9759018995714772 1.0 17.63624186007176 1.5578871290271403 1.3121983446230896 0.9905976777012407 1.0810229106357694 0.2026790694355216 0.06331995591568454 0.6486157921426684 2.14217481118813 0.05473397044732695 0.01912989938397096 36.13159462210346 -1.5578871290271403 0.09042523293452864 EYGS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 8 EYGSPLK 7 0 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK 162.49 0.0013321 26179470000.0 14433170.0 12440610.0 11629930.0 10644620.0 10479930.0 13397240.0 14163610.0 13633710.0 19571800.0 13632330.0 True False 14355463.416395925 12854688.183342446 13267323.054836288 11992227.800582515 11814486.966088314 12471120.332510728 13478462.074055485 14651126.670776607 14748592.138683666 12762303.02817509 1.124833298872754 1.0072389093851948 1.0395712298592406 0.9396601674562581 0.9257331486335734 0.9771841575128312 1.0561151889513472 1.1480002189598224 1.1556372001294346 1.0 23.60538535910753 2.003311221467576 4.534361821202771 1.1152467802827244 0.9985454463267921 0.308495855250566 0.0655668299895042 0.20422514345363527 10.710359307338718 0.028426681232658613 0.01856866790728783 100.76535087033447 -2.003311221467576 -0.1167013339559323 EYGS(ph)PLKAYT(ph)PVVVTLWYR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYGSPLKAYTPVVVTLWYR 19 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12 P21127-2 CDK11B Cyclin-dependent kinase 11B 2 EYGS(1)PLKAYT(0.978)PVVVT(0.022)LWYR;EYGS(0.999)PLKAY(0.087)T(0.913)PVVVT(0.001)LWYR 132.78 2.9749e-05 586960000.0 875310.0 900260.0 760310.0 968500.0 882230.0 1127240.0 1197770.0 1070470.0 2029820.0 1285350.0 True False 870597.4282160838 930224.6098813381 867355.0392670096 1091112.0006974584 994576.7611131076 1049316.5520375385 1139829.2891742606 1150353.90713652 1529598.0591944985 1203317.862556502 0.7234974692110537 0.7730497807994263 0.7208029285165563 0.9067529325787143 0.8265287103775599 0.8720194261956846 0.9472387343711851 0.9559850667325275 1.271150463888901 1.0 20.19858635744137 2.137452765123894 0.7726920945174269 1.1071002436719206 0.766086514801036 0.6813141506890696 0.087222908295387 0.37888611366127106 0.42782425593767875 0.07128403775696376 0.04069594787193749 137.23116970844427 -2.137452765123894 -0.34101372887088466 EYGSCSHHYQQLLQSLEQGAQEESR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYGSCSHHYQQLLQSLEQGAQEESR 25 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 295.04 3.4030999999999984e-63 2402280000.0 509736.0 746319.0 804777.0 913901.0 804648.0 915590.0 935197.0 555925.0 767261.0 865726.0 False True 506991.63801299356 771159.7767556368 918082.6063529179 1029600.7728956187 907115.1532776494 852297.4183670279 889957.9483105267 597410.946429951 578179.8073206637 810474.6254946827 0.625549057385412 0.9514915735763477 1.1327715606056825 1.2703676839570268 1.1192394243360562 1.0516028405538522 1.0980700941344468 0.7371124618063326 0.7133842184976055 1.0 19.62840749269531 1.740181896809605 9.247080881809241 0.7971644315462657 1.048941148156847 0.24344338667715226 0.17440051709489846 0.1316069606637703 46.444007274143004 0.08667746311638 0.04674895635902178 54.977108785297204 -1.740181896809605 0.2517767166105812 EYHPDKNPNAGDK ddPTM_BT-474_Trastuzumab_2h_R1 6 EYHPDKNPNAGDK 13 1 O60884;I3L320 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 ;;;;; 200.44 6.5995e-08 2624870000.0 3785560.0 2631500.0 2486200.0 2134688.0 2112600.0 3412160.0 2749650.0 3061800.0 4098660.0 3218530.0 False True 3765178.9655752536 2719087.886724655 2836235.349562209 2404939.281925508 2381627.087638773 3176285.4105606694 2616638.9248169507 3290287.063505373 3088600.1622302094 3013120.6598778367 1.249594487108229 0.902415865030409 0.9412949794307941 0.7981556510329105 0.7904187573209674 1.0541514161233252 0.8684149160236547 1.0919864933781886 1.025050275402988 1.0 21.522827015878168 1.727123331463663 12.755408581090927 1.0430218228829193 0.9346175888899889 0.1021943407222008 0.12765629195883602 0.20116541900388957 142.28270544599346 0.05955084358102588 0.03267649366753769 53.34863740732811 -1.727123331463663 -0.10840423399293042 EYHPDKNPNAGDKFK ddPTM_BT-474_Trastuzumab_2h_R1 2 EYHPDKNPNAGDKFK 15 2 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 ; 206.95 2.1844e-09 2588900000.0 4341000.0 3899000.0 3713600.0 3268100.0 3573600.0 5491900.0 4566300.0 4192100.0 6967300.0 5154800.0 False True 4317628.538330436 4028775.858004731 4236442.600810152 3681841.124914158 4028676.7776133283 5112257.8795420285 4345410.624040024 4504935.7890524715 5250302.272036844 4825816.2507536905 0.8946939365244405 0.8348382219019469 0.8778706814932103 0.7629468122287358 0.8348176905791086 1.05935609934249 0.9004509078358222 0.9335075259752992 1.0879614969212426 1.0 22.20234155342876 2.760069030548239 24.525304205616486 0.9793485127876482 0.8383976329213518 0.6111303084633988 0.06115261016694941 473.32237291562217 539712.3143872989 0.018884831922302118 0.020013067910592573 575.5314100431901 -2.760069030548239 -0.1409508798662964 EYHTDTTVK ddPTM_BT-474_Trastuzumab_2h_R1 3 EYHTDTTVK 9 0 Q02880;Q02880-2;E9PCY5;P11388;P11388-2;P11388-3;P11388-4 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2;DNA topoisomerase 2-alpha 0 ;; 137.95 0.00015019999999999996 1242710000.0 1037440.0 1538750.0 1296630.0 1225510.0 1204820.0 1675500.0 1523800.0 1462490.0 2161820.0 1539700.0 False True 1031854.5383104187 1589966.3635559818 1479184.2334900019 1380659.4403456282 1358246.685472378 1559676.628702758 1450087.972518711 1571628.430173743 1629068.4279038752 1441435.027796509 0.7158522711133174 1.1030440726742499 1.026188627975275 0.9578367486019906 0.9422878307242892 1.0820304756205368 1.0060030071112047 1.0903220747842224 1.1301712505170611 1.0 20.45907437862437 4.745831399509078 24.939434639322286 1.0369648728277816 0.7158521152762815 0.7234705589149003 0.05966403124040796 466.2149194086697 1599118.6935923835 0.01487977127754007 0.15353292898357537 55696.948194678786 -4.745831399509078 -0.32111275755150015 EYIDHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYIDHLK 7 0 M0R3F6;M0R2Z9;Q8IX01-4;Q8IX01-3;Q8IX01 M0R3F6 SUGP2 SURP and G-patch domain-containing protein 2 0 65.803 0.069594 1269500000.0 1694000.0 2016200.0 1901500.0 1673300.0 1644400.0 2428300.0 2272600.0 1483600.0 2924800.0 2058600.0 False True 1684879.692221095 2083307.9981813603 2169214.671865711 1885139.6084326867 1853804.5928775908 2260437.336603344 2162665.6558249267 1594313.7655681514 2204022.230312078 1927218.385543871 0.8742546796250148 1.080992177019648 1.125567651355478 0.9781660566198317 0.9619068636865653 1.1729015007115744 1.1221694811792755 0.8272616002042902 1.1436286862166332 1.0 20.87808863130006 EYINECDSDYHEER ddPTM_BT-474_Trastuzumab_2h_R1 1 EYINECDSDYHEER 14 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 207.08 9.942200000000002e-09 408190000.0 113920.0 137820.0 118060.0 118940.0 111110.0 132190.0 129800.0 91630.0 139620.0 102220.0 False True 113306.66737770174 142407.2553860507 134681.8218040842 133997.79180480694 125259.19989943369 123052.016441789 123521.07811584762 98467.89588771222 105212.5218121488 95696.23208505494 1.184024333131472 1.4881176853387388 1.407388973103756 1.400241042779088 1.308925097365413 1.2858606212668875 1.2907621901566815 1.0289631445488243 1.0994426794007497 1.0 16.546174501134093 1.8962271889573559 1.2317914474980578 1.0141940325166905 1.3705906737247673 0.7276890775111524 0.08231709812434507 0.21772497440822944 0.6110273943808259 0.061526637251801866 0.026557156057698404 78.74576182979975 -1.8962271889573559 0.3563966412080768 EYIPGQPPLSQS(ph)SDS(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 EYIPGQPPLSQS(1)S(0.001)DS(0.594)S(0.404)PT(0.001)R 209.43 3.2666e-16 1104100000.0 524130.0 587720.0 553330.0 568410.0 573250.0 577820.0 536490.0 535450.0 646060.0 578670.0 True False 521308.1423163174 607281.904915758 631234.0543694212 640370.6477196099 646249.9895810502 537876.6634419743 510537.9291091762 575407.9979600074 486847.16976046993 541738.7851756875 0.9622869112966604 1.120986574219187 1.1652000403934715 1.1820653518686792 1.1929180765070557 0.9928708782915354 0.9424060877302836 1.062150271875773 0.8986751236623827 1.0 19.0472378570633 2.717166465379876 21.421315210177884 0.9865160866057133 1.1299234551598774 0.5037593340871911 0.07191514065359823 113.45414568147832 113597.1825003483 0.0237224697163648 0.022404512871568992 521.3945236955379 -2.717166465379876 0.14340736855416403 EYIPGQPPLSQS(ph)SDSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 EYIPGQPPLS(0.001)QS(0.998)S(0.001)DS(0.078)S(0.918)PT(0.004)R 304.04 4.9628999999999975e-50 884300000.0 379750.0 435120.0 366990.0 411820.0 391530.0 431910.0 372870.0 380770.0 463680.0 435260.0 True False 377705.4681941911 449602.70616440545 418659.00206573633 463956.3697751445 441389.024719875 402053.07830677833 354832.8535982748 409184.9909108823 349412.2769936764 407481.334155166 0.9269270431179151 1.1033700650278129 1.0274311164062155 1.138595392932706 1.0832128682287008 0.9866785165518266 0.8707953563908696 1.0041809442860703 0.8574927185759695 1.0 18.636374448532553 2.5389860916350546 4.696579287135313 0.9374862956080983 1.060559171603044 0.4165692049017954 0.06836459447859829 0.2026245222303188 8.988786057601434 0.021897980641760906 0.020126970374360953 345.92829922790514 -2.5389860916350546 0.12307287599494576 EYIPGQPPLSQSSDS(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 3 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLS(0.001)QS(0.002)S(0.006)DS(0.475)S(0.475)PT(0.042)R;EYIPGQPPLSQSS(0.002)DS(0.539)S(0.45)PT(0.007)R;EYIPGQPPLSQSS(0.001)DS(0.448)S(0.448)PT(0.102)R 147.06 1.1450999999999997e-07 20620400000.0 1294250.0 1366950.0 1336740.0 1436440.0 1317240.0 1443350.0 1486750.0 1330830.0 1561920.0 1577520.0 True False 1287281.901804694 1412448.1044112765 1524941.3728476306 1618293.15671849 1484982.7061068323 1343574.6117804395 1414830.222563457 1430143.2924178087 1177005.744655718 1476841.3230171797 0.8716453702519531 0.9563980113487425 1.032569544934037 1.0957799808934956 1.0055126999514203 0.9097623358991087 0.9580109931329425 0.9683797914701038 0.7969750888681127 1.0 20.49408339556642 2.7462024155281233 24.043686379754178 0.930963921553946 0.998359135689067 0.16369900312021302 0.07336855508284687 673.9810893400123 2120572.5940667437 0.023420915233766812 0.02438172644456585 557.4455020241772 -2.7462024155281233 0.06739521413512095 EYIPGQPPLSQSSDSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLSQS(0.004)S(0.008)DS(0.146)S(0.832)PT(0.009)R;EYIPGQPPLSQSSDS(0.26)S(0.729)PT(0.01)R;EYIPGQPPLSQSSDS(0.043)S(0.941)PT(0.016)R;EYIPGQPPLSQSSDS(0.302)S(0.698)PTR 357.65 4.699999999999998e-91 21609530000.0 1057030.0 1279080.0 1211160.0 1203770.0 1228950.0 1264330.0 1240520.0 1136740.0 1236920.0 1279740.0 True False 1051339.0679270742 1321653.4045798134 1381680.8004085615 1356167.1585746817 1385449.4979426619 1176929.843012687 1180511.3083534008 1221569.3110487612 932097.639878834 1198065.8975594623 0.8775302511061535 1.1031558508360073 1.1532594352473722 1.131963743678275 1.1564050865356506 0.9823581869830109 0.9853475595609379 1.0196177969318523 0.778001979505115 1.0 20.19227583259913 2.0529535787106754 1.2504599078229321 0.9210269397411016 1.0868496066722764 0.3031859430287278 0.09794706268967641 0.5691745655217865 1.659364269283578 0.0700742964002277 0.03404437000385511 112.96751584063995 -2.0529535787106754 0.16582266693117476 EYLESLQCLESDKSDWR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYLESLQCLESDKSDWR 17 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;F8W705;F8VYC4;A0A286YES2;P0DJD0;A0A1W2PNU4;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 0 ; 111.66 0.00045491 323050000.0 486120.0 431720.0 460740.0 414750.0 443520.0 543880.0 517600.0 482140.0 652760.0 543160.0 False True 483502.7839330089 446089.53921974875 525608.1871761291 467257.307474724 499999.64305100235 506282.85575580754 492561.71057598456 518119.7350573127 491896.04453587014 508495.0637773281 0.950850496642651 0.877274079921242 1.03365445334253 0.918902346865923 0.9832930123977645 0.9956494995151235 0.9686656678965898 1.0189277575449567 0.9673565774303627 1.0 18.955874243606047 4.314773639247105 0.4968213049765505 0.9963290677586325 0.8920083272837682 0.22365893307358675 0.03915080590225748 4.025017516357633 1.0371369701061093 0.02426312614453145 0.23456093627025804 20643.039294059367 -4.314773639247105 -0.10432074047486428 EYLQTHWEEEECQQDVSLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYLQTHWEEEECQQDVSLLR 20 0 Q9UHY7 Q9UHY7 ENOPH1 Enolase-phosphatase E1 0 252.4 4.4638999999999996e-36 135480000.0 146120.0 162780.0 138750.0 142730.0 137700.0 162710.0 133050.0 125210.0 167760.0 155080.0 False True 145333.3061554582 168198.03389741198 158284.7939633802 160799.60336556326 155235.27878815637 151462.24067814116 126613.86319964204 134553.80600349698 126417.79586883003 145182.66162933223 1.0010376206389617 1.1585270032232953 1.0902458474518064 1.1075675398216824 1.0692411686492538 1.0432529544391562 0.872100440773717 0.9267897729208745 0.8707499535418972 1.0 17.147509644885066 2.374842002242767 4.193196596028339 0.9119437689504185 1.0883379448339536 0.7167385904794593 0.049923936286689806 0.10411012798882156 3.3348908365292402 0.016880327843159362 0.013913749994714026 237.0511149038148 -2.374842002242767 0.17639417588353512 EYLSEEVQAVHK ddPTM_BT-474_Trastuzumab_2h_R1 4 EYLSEEVQAVHK 12 0 Q53GS9;B9A018;A0A087X1B2;Q53GS9-2 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 0 ;;; 167.2 4.9863e-05 1248400000.0 1943030.0 1995860.0 1756030.0 1716630.0 1746200.0 2185820.0 2117680.0 1966870.0 2599480.0 2185440.0 False True 1932568.942370927 2062290.9935771509 2003263.760313619 1933955.1819899618 1968568.2194617167 2034719.4082668193 2015239.7280767956 2113647.8269634866 1958872.9852474155 2045963.348150681 0.9445765214307237 1.0079804193174957 0.9791298373572246 0.9452540700389565 0.9621717912205413 0.9945043297603425 0.9849832988935721 1.0330819605707917 0.9574330776834369 1.0 20.96434886987424 2.6270049371826394 4.346634818381476 0.9990373956072763 0.9694941273063397 0.21056032665061974 0.024361010425256853 0.34046815007952375 10.695931509157123 0.008171044352214092 0.007667611332233012 423.6477821701078 -2.6270049371826394 -0.029543268300936676 EYNEFAEVFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYNEFAEVFLK 11 0 O95373 O95373 IPO7 Importin-7 0 86.911 0.032844 76666000.0 177740.0 165030.0 156260.0 156180.0 144230.0 185770.0 178650.0 157500.0 210480.0 169230.0 False True 176783.06758877035 170522.92378725813 178260.04976373204 175952.37198650377 162596.83558181394 172928.15715554226 170008.01699072585 169253.4497687946 158610.0242875022 158429.5965149077 1.1158462274574792 1.0763325006083222 1.125168867970691 1.1106029167343567 1.0263034127371151 1.0915142180474486 1.073082433652027 1.0683196416072955 1.0011388514303103 1.0 17.273482347459904 1.4742388009687855 0.4152643810479761 0.991808262196055 1.1069767284680339 0.6112824060156017 0.02706684236462236 0.7260618205655105 0.3618394599682992 0.03323235402365974 0.02380032744044664 29.80154645488575 -1.4742388009687855 0.11516846627197885 EYQAAYGK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYQAAYGK 8 0 P12429;D6RA82;D6RFG5;D6RCA8;D6RAZ8 P12429 ANXA3 Annexin A3;Annexin 0 100.15 0.014677 69663000.0 72978.0 78189.0 79618.0 87006.0 68030.0 77937.0 85116.0 70015.0 112680.0 74308.0 False True 72585.09455661812 80791.47359875141 90827.52234793823 98020.95067907374 76693.21725459892 72549.39863396405 80998.6139053043 75239.87482896612 84911.52383464336 69565.59982172053 1.0434049981978997 1.161371048417609 1.3056384560861511 1.4090434198839261 1.1024589373360498 1.0428918721306257 1.1643486739549973 1.0815672548182917 1.2205964449706557 1.0 16.08608644948343 EYQLNDSASYYLNDLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYQLNDSASYYLNDLDR 17 0 P08754 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha 0 238.07 8.5335e-19 0.0 24097.0 25298.0 34852.0 27847.0 31792.0 39564.0 26385.0 27862.0 26039.0 28007.0 False True 23967.2644294284 26140.02863703605 39758.85866098546 31372.427344782755 35840.52275405273 36829.033803638245 25108.65674951189 29941.20392036925 19622.03735472382 26219.56928200094 0.9140983275374135 0.996966363401725 1.5163810752710913 1.1965271819441794 1.366937891640208 1.404639161213088 0.9576304049642927 1.1419411050708266 0.7483737487706881 1.0 14.678356365649728 1.7046715025771046 1.670564899603816 0.9078483272304507 1.2293507489204443 0.27905693892630656 0.19761354630974684 0.46192125109333154 2.5677998480486663 0.15465105506097812 0.05968087140346782 50.66073689114304 -1.7046715025771046 0.32150242168999354 EYQVETIVDTLCTNMLSDKEQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 EYQVETIVDTLCTNMLSDKEQLR 23 1 Q86VP6;Q86VP6-2 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;; 247.85 9.075900000000001e-38 438275000.0 482436.0 474963.0 431332.0 407627.0 415136.0 523375.0 469724.0 447795.0 604593.0 552714.0 False True 479838.6181796785 490771.85633380356 492059.79639504664 459232.5364050616 468001.10889615153 487195.3181422295 447001.65560006455 481211.73675693566 455599.1562811379 517439.3193177371 0.9273331195865894 0.948462627426351 0.9509516923527297 0.8875099345186537 0.9044560230042593 0.9415506320327851 0.8638726105883348 0.9299867999815536 0.8804880867612886 1.0 18.98103016052249 EYRPETGSWVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYRPETGSWVFK 12 1 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 137.84 7.763300000000001e-05 386950000.0 317860.0 308950.0 269390.0 270590.0 291770.0 324200.0 311840.0 298020.0 419680.0 356600.0 False True 316148.6770775657 319233.21398578107 307317.77042014454 304846.666255782 328925.1800437204 301788.81708471157 296755.10785551585 320259.76571489667 316255.48742388305 333841.4826993805 0.9470023752627923 0.9562419008102898 0.9205499805932741 0.9131479521084326 0.9852735417542848 0.9039883679059385 0.8889102260630073 0.9593168683691896 0.9473223185647861 1.0 18.348803707646244 0.8184291810341533 1.5520017338051877 0.9994464498832427 0.9327768163338358 0.3487663846711003 0.027185280684720207 0.7423773326820209 3.2762488160658623 0.025834605972409417 0.007497874504852724 6.583080730686482 -0.8184291810341533 -0.06666963354940691 EYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_BT-474_Trastuzumab_2h_R1 6 EYSPPYAPSHQQYPPSHATPLPK 23 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 EY(0.022)S(0.974)PPY(0.002)APS(0.001)HQQY(0.001)PPSHATPLPK;EY(0.008)S(0.984)PPY(0.008)APSHQQYPPSHATPLPK;EY(0.006)S(0.993)PPY(0.001)APSHQQYPPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK 260.32 1.6938999999999996e-43 11415230000.0 5393770.0 5321100.0 5319040.0 5025180.0 5025910.0 6619110.0 6704600.0 5956020.0 7801830.0 6373030.0 True False 5364730.541624183 5498209.59682712 6067914.598075518 5661367.272756683 5665929.847597544 6161546.505408961 6380272.88394077 6400488.4564567385 5879173.535665914 5966297.769174511 0.8991724431424817 0.9215446177081847 1.0170318064622959 0.9488911703345947 0.9496558949623922 1.0327252751686689 1.0693855940119357 1.072773888277169 0.9853972703208458 1.0 22.5084045515885 2.712183409304224 4.738544852932141 1.0434923772027251 0.9494119998279487 0.5418267876369698 0.038340102195283755 0.1478285723915279 8.7875673450474 0.012884173591011598 0.012534151154173941 515.4462795918603 -2.712183409304224 -0.09408037737477648 EYSGFAGVSRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYSGFAGVSRPR 12 1 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8;Q9NYF8-2;H0YF14;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 115.05 0.00090419 254750000.0 95449.0 141630.0 116640.0 126110.0 118350.0 112300.0 104490.0 90193.0 132940.0 105040.0 False True 94935.11318938095 146344.068932857 133061.89814694534 142075.51306965042 133421.1709845916 104536.96532576525 99435.41950943694 96923.65965077395 100178.71830473472 98336.25727073153 0.9654131225272605 1.4882005172309354 1.3531316102524622 1.4447927652818784 1.356785123693157 1.0630561730447239 1.0111775887064653 0.9856350276168379 1.0187363347471186 1.0 16.58543582602677 2.669700623700769 4.041539570670372 1.0053991236325994 1.3402931511700151 0.5720338651117973 0.1323763440006388 0.15531833675340015 4.990718320130515 0.04241226277757419 0.04037419753678057 467.41282412948675 -2.669700623700769 0.3348940275374157 EYSPPYAPS(ph)HQQYPPSHATPLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 EYSPPYAPSHQQYPPSHATPLPK 23 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 EYS(0.446)PPYAPS(0.55)HQQYPPS(0.003)HATPLPK 181.62 2.7005e-17 818350000.0 301030.0 286350.0 268780.0 270600.0 286240.0 327710.0 341700.0 302860.0 396730.0 326980.0 True False 299409.2879275773 295880.98664776934 306621.88772235933 304857.93225475727 322690.96732259885 305056.17904636246 325170.66557923885 325460.95109191886 298961.20740963845 306111.8564583379 0.9781041851553605 0.9665780021429486 1.0016661597819907 0.9959037058606997 1.05416030289084 0.9965513344560075 1.0622609308290378 1.0632092296503857 0.976640404813354 1.0 18.223699399479365 3.7055158896202833 1.4343390780159493 1.0321874903757067 0.972688935916285 0.2934540468207101 0.02920860277776774 0.45055716230285925 1.7902592351288438 0.009076627468397597 0.02175641250315505 5075.933101085433 -3.7055158896202833 -0.05949855445942165 EYSSELNAPSQESDSHPR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYSSELNAPSQESDSHPR 18 0 P49756;P49756-2;P49756-3;E9PQU5 P49756 RBM25 RNA-binding protein 25 0 ;;; 204.78 1.035e-15 3792820000.0 913900.0 1275840.0 1223790.0 1408500.0 1255480.0 1265770.0 1216350.0 1162309.0 1292930.0 1295750.0 False True 908979.6639438355 1318305.5631384323 1396088.9946266327 1586815.955583243 1415357.9361870335 1178270.2992020824 1157510.503591768 1249046.3996655128 974304.7258743829 1213054.1256526127 0.7493314970218764 1.0867656564204795 1.1508876356820013 1.3081163668023055 1.1667722867894152 0.9713254126794905 0.9542117528919308 1.0296707898285549 0.8031832259341398 1.0 20.21021249329331 2.6715437245366638 7.435057197449814 0.9593906113178172 1.1071506459944576 0.18982177282840418 0.14332874632720788 0.49662041764443005 48.93171902104247 0.04838363729442237 0.04563590465612724 469.40069094932403 -2.6715437245366638 0.14776003467664034 EYTAGR ddPTM_BT-474_Trastuzumab_2h_R1 3 EYTAGR 6 0 P07237;I3L3P5 P07237 P4HB Protein disulfide-isomerase 0 ;; 196.32 0.00056999 1998370000.0 1567190.0 1994350.0 1672380.0 1766160.0 1709350.0 1380610.0 1959620.0 1624790.0 1893430.0 1613350.0 False True 1558752.4231711794 2060730.7341399642 1907836.5674124518 1989755.6749115356 1927025.5903887763 1285171.6803063645 1864825.6941246346 1746040.080316445 1426819.5471621319 1510384.6217415743 1.0320234996658229 1.3643748118699752 1.263146181409467 1.3173834308622756 1.2758509075435283 0.8508903373396876 1.2346694128640996 1.156023475863482 0.9446729837045836 1.0 20.52648455014682 EYTINIHK ddPTM_BT-474_Trastuzumab_2h_R1 6 EYTINIHK 8 0 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 H7C2W9 RPL31 60S ribosomal protein L31 0 ;;;;; 178.3 0.00025035 11777950000.0 9208700.0 9280600.0 8614340.0 7912130.0 8092870.0 9555600.0 9684100.0 8605170.0 11105200.0 9469400.0 False True 9159121.382382762 9589499.160758827 9827164.194814444 8913804.846751042 9123449.024301423 8895043.863462891 9215643.086145466 9247331.481567873 8368472.2620561 8865054.784838788 1.0331714360126565 1.0817191087368123 1.1085283095622913 1.0054991269761386 1.0291475062178461 1.0033828418833228 1.039547223318491 1.0431217523193272 0.9439842691517311 1.0 23.079698116135788 3.7238807213179936 24.67489204615111 1.015142448520833 1.0751975681563404 0.4645192431965036 0.031651705339348475 601.4496597421798 1010955.5536319617 0.008376988206344136 0.013044960636850603 5295.179921645825 -3.7238807213179936 0.06005511963550747 EYTINIHKR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYTINIHKR 9 1 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 H7C2W9 RPL31 60S ribosomal protein L31 0 166.19 3.9554e-05 654280000.0 560070.0 688290.0 658670.0 753260.0 703920.0 667450.0 761610.0 670200.0 1045200.0 809910.0 False True 557054.6453496267 711199.3165699085 751405.010737727 848622.6387665123 793560.0395392808 621310.7525082994 724768.0146672624 720213.727206642 787624.4649624542 758220.8504011633 0.7346865297292964 0.93798438303777 0.9910107461964016 1.1192288346034256 1.0466080418646098 0.8194324281369646 0.9558798261532884 0.9498732814134401 1.0387797493906081 1.0 19.532258604325424 4.729730808172674 2.8900131967500498 0.9847392406182701 0.6937927122680915 0.5162991284151619 0.07384872016662804 0.34523834895540906 4.155479285342853 0.019420116556439757 0.23261217198487408 53669.90272869844 -4.729730808172674 -0.29094652835017865 EYVAYSHTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYVAYSHTGR 10 0 Q969X5;Q969X5-2 Q969X5 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 0 ;;; 180.36 2.0058e-06 4632660000.0 1823330.0 3040140.0 3412400.0 2462780.0 2341190.0 2667290.0 2585290.0 1952420.0 3302010.0 2402880.0 False True 1813513.3938710056 3141329.2220965577 3892836.258887487 2774567.695485477 2639326.669179691 2482906.520425292 2460229.6459331284 2098119.494587877 2488273.8801671173 2249526.141190931 0.8061757365979778 1.3964404167508333 1.7305139013972801 1.2334009570640425 1.1732811727995274 1.1037464624042137 1.093665728476775 0.9326939821544383 1.1061324581228427 1.0 21.101189701543372 2.922720418387914 1.7330294743009833 1.027395113788053 1.329327115949038 0.21945893073655254 0.21637616643693605 0.5004851391708237 3.0231970900662564 0.08051384544072362 0.09004534836731691 836.9902874077926 -2.922720418387914 0.30193200216098504 EYVDLER ddPTM_BT-474_Trastuzumab_2h_R1 2 EYVDLER 7 0 Q13951-2;A0A494C0A9;Q13951 Q13951-2 CBFB Core-binding factor subunit beta 0 ; 120.92 0.010442 1470970000.0 2299000.0 2821900.0 2457000.0 2647900.0 2537200.0 2679300.0 2511200.0 2454200.0 2958500.0 2638000.0 False True 2286622.439442912 2915825.235625428 2802924.2433731556 2983123.868504696 2860297.380837403 2494086.297393788 2389723.662284411 2637344.8661750844 2229417.3168689427 2469640.5814945744 0.9258928026114215 1.1806678499997891 1.1349522940204055 1.2079182253716338 1.1581836653762836 1.0098984913361035 0.9676402631990282 1.0679063528260533 0.9027294633779246 1.0 21.235869664160155 2.695730042766796 7.01838091318204 0.9975927893768531 1.1303176369072523 0.39299134199565855 0.08131312326467334 0.25019437886031076 34.141469479755486 0.025868480576033772 0.024559593879861667 496.2837358294313 -2.695730042766796 0.13272484753039915 EYVEHTVK ddPTM_BT-474_Trastuzumab_2h_R1 4 EYVEHTVK 8 0 O75937 O75937 DNAJC8 DnaJ homolog subfamily C member 8 0 ;;; 94.302 0.010456 1844250000.0 2555080.0 2658940.0 2239680.0 2242690.0 2360230.0 2720720.0 2770330.0 2567330.0 3721300.0 2715870.0 False True 2541323.733176072 2747441.21053683 2555007.476352456 2526614.3240518156 2660791.3003207697 2532643.0302859796 2636318.554211679 2758917.2012375887 2804235.477865266 2542540.851426714 0.9995212984483773 1.0805888168896634 1.00490321519072 0.9937359797519235 1.0465087704796172 0.9961071142140429 1.0368834596039402 1.0851024083603054 1.1029264195663584 1.0 21.27783952361433 1.9176017430364918 5.342550868701448 1.0704897548658128 1.0218178918513527 0.21313075022073946 0.03541803938764551 0.2843634448681677 13.480307026015339 0.015132071375604832 0.00908694028376943 82.71832717491311 -1.9176017430364918 -0.048671863014460026 EYVEPELHINDLWR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYVEPELHINDLWR 14 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ;;; 198.23 2.2337e-08 710530000.0 638190.0 821580.0 703930.0 758670.0 710290.0 783880.0 737160.0 666590.0 813590.0 730410.0 False True 634754.0559495746 848925.7936444022 803037.2253307552 854717.5442118114 800741.2212813325 729692.2206550386 701500.7545753343 716334.3306754348 613091.6460474582 683794.6084645372 0.9282817502391788 1.2414923767104096 1.1743836751418348 1.2499623916764746 1.171025935813386 1.0671219275822672 1.025893953961638 1.0475869827110302 0.8966020475419618 1.0 19.38320352199294 2.3502651882801584 1.5740157725763038 0.9887682724914308 1.164081727016926 0.40817703995089594 0.09081576179186734 0.3830972223562061 1.9145071049852371 0.04576755435401304 0.031022902522744193 224.00885607368255 -2.3502651882801584 0.17531345452549507 EYVESQLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 EYVESQLQR 9 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ;; 199.7 5.6549e-05 1513200000.0 821200.0 1101350.0 992470.0 1054100.0 1036700.0 1072180.0 1020190.0 940810.0 1217270.0 1033300.0 False True 816778.7504438967 1138007.7689698671 1132201.1492961168 1187548.9519206912 1168717.599997687 998062.7202402403 970839.5121957366 1011018.01953638 917290.1190823262 967353.9093473614 0.8443432569523058 1.1764130562491237 1.17041047578954 1.227626146383062 1.2081592772868188 1.0317451664754185 1.0036032343640673 1.045137678947798 0.9482466656915549 1.0 19.883684275048708 2.5841416788737823 6.267776928379414 1.008733057697406 1.1360648180343405 0.2506053122705356 0.10325831022272274 0.33975292325527995 17.10757870200023 0.03395992542990207 0.031878353319378536 383.83244183030513 -2.5841416788737823 0.12733176033693439 EYVNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYVNAR 6 0 P04626-5;P04626-4;P04626;B4DTR1;J3QLU9;P04626-6;F5H1T4 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 105.27 0.077053 164410000.0 158770.0 220610.0 249380.0 208720.0 259850.0 275520.0 215210.0 158230.0 217490.0 218290.0 False True 157915.19996100533 227952.87048843902 284490.5363501824 235143.9305994564 292940.35724838317 256473.95090431737 204799.47011796292 170037.92607565975 163892.50371668956 204358.5453125288 0.7727359759754753 1.1154555349756823 1.3921147066060118 1.1506439832983104 1.4334627250374326 1.25501945862889 1.002157603954167 0.8320568431117868 0.8019850770910809 1.0 17.640743045773114 2.0437000902114026 3.8064724697316437 0.8679775189907286 1.2012935699025276 0.38391371227807103 0.17632980913097743 0.22316552722972133 6.7805396253530175 0.07773284044710205 0.051499625331461046 110.58598490211705 -2.0437000902114026 0.33331605091179894 EYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_BT-474_Trastuzumab_2h_R1 6 EYVSNDAAQSDDEEKLQSQPTDTDGGR 27 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVS(0.005)NDAAQS(0.994)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR 247.26 8.583099999999997e-46 3750470000.0 2444810.0 1762498.0 1645107.0 1536971.0 1548051.0 2203876.0 2221552.0 2078566.0 2923820.0 2142800.0 True False 2431647.4146039253 1821161.6804774588 1876723.766073619 1731551.3710108143 1745186.1188328525 2051527.2394860731 2114087.042607223 2233679.1496642833 2203283.7381807524 2006044.6694566242 1.2121601535735411 0.9078370527864444 0.9355343849755677 0.8631669061885039 0.8699637377993032 1.0226727603437509 1.0538584084370686 1.1134742828380377 1.0983223712448806 1.0 20.935922300740888 2.4303378757255802 3.407411944663294 1.0789009490920036 0.9480979833361887 0.21000681817062528 0.0968198132593269 0.319638727534728 7.7045614311680914 0.035399982770646155 0.029691212792693024 269.3629599410384 -2.4303378757255802 -0.13080296575581496 EYVTCHTCR ddPTM_BT-474_Trastuzumab_2h_R1 5 EYVTCHTCR 9 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 ;;;; 214.05 8.832e-07 1152762000.0 866820.0 1124567.0 1152368.0 982043.0 774641.0 851838.0 993580.0 753550.0 1368226.0 969690.0 False True 862153.1374327567 1161997.5327798936 1314611.3978377855 1106369.5431088621 873286.9396930734 792952.444070963 945516.739555809 809783.7274493668 1031045.0355890909 907803.5540066231 0.9497133312902482 1.2800098960302329 1.4481232112781468 1.2187323328112796 0.9619778814907594 0.8734846218339192 1.041543333227478 0.8920252888142569 1.135757875190659 1.0 19.79202061080437 3.26144150999378 6.214246057611484 0.9714231438548873 1.2461472613470372 0.43128435942022014 0.13376869641249423 0.14353142641364103 18.30567025934051 0.037663193999798034 0.04966621613733081 1825.7508436490534 -3.26144150999378 0.27472411749215 EYWDYEAHVPSWGNQDDYQLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYWDYEAHVPSWGNQDDYQLVR 22 0 P19784;H3BNI9 P19784 CSNK2A2 Casein kinase II subunit alpha 0 196.89 2.0713e-22 524000000.0 281030.0 330770.0 299280.0 312150.0 295890.0 328330.0 315130.0 289620.0 315550.0 320580.0 False True 279516.96570536797 341779.47949531244 341416.0226116069 351668.1579945396 333569.83762256784 305633.3199056852 299885.95798649534 311232.91506056103 237786.9306533698 300120.30993765366 0.9313497169299679 1.1388082318264732 1.1375971945468535 1.1717572798308598 1.1114537289790982 1.018369333182339 0.9992191399802066 1.037027167955464 0.792305361482424 1.0 18.195181427677817 1.9795252758982433 1.129245684986481 0.9254911348504752 1.1027749494496757 0.3878675121564207 0.08508472393077668 0.5037309194590434 1.1841909317072572 0.06518736060483726 0.02988994747188752 95.39492609837558 -1.9795252758982433 0.1772838145992005 EYWDYESHVVEWGNQDDYQLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 EYWDYESHVVEWGNQDDYQLVR 22 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;A0A2R8Y4H0;A0A2R8Y4D6;V9GYA2;A0A2R8YEW1;A0A2R8YDY7;A0A2R8YCK2;V9GY80;A0A2R8Y7T1;A0A2R8YF47;A0A2R8YEL7;A0A2R8Y797;A0A2R8Y3W6 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ;;; 271.92 2.4566999999999997e-45 1441180000.0 627370.0 750500.0 691460.0 733270.0 751100.0 741290.0 725390.0 669610.0 806570.0 747310.0 False True 623992.3096273603 775479.938813169 788811.5577219389 826101.9068161331 846748.1328815115 690046.3671089617 690300.1144411 719579.6984106838 607801.6309842768 699616.0359957195 0.8919068139129649 1.1084364836055782 1.127492105865288 1.1807932698975292 1.2103040658243176 0.9863215415393704 0.9866842366736768 1.0285351698472023 0.8687645790154466 1.0 19.41620383228751 2.6265571259904523 9.418672853440603 0.9806881223650048 1.1095614535100269 0.34797322122165975 0.0884041738210655 0.44252168698444616 34.413906774409774 0.029303844019316048 0.02761208208870152 423.21117417592706 -2.6265571259904523 0.12887333114502209 EYWMDPEGEMKPGR ddPTM_BT-474_Trastuzumab_2h_R1 7 EYWMDPEGEMKPGR 14 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ;;;;;; 145.29 7.8624e-06 6727640000.0 9652560.0 8462810.0 8014570.0 7424590.0 6501290.0 9853690.0 9390050.0 7880800.0 9002560.0 8932510.0 False True 9600591.689460246 8744489.514973314 9142951.79210876 8364542.33273963 7329190.745335165 9172527.603391258 8935817.408025539 8468905.313891545 6783999.716123598 8362429.56429343 1.1480624877791041 1.045687673389948 1.093336777525525 1.000252650073756 0.8764427477667411 1.096873526152836 1.068567135821437 1.012732633354875 0.811247456730812 1.0 22.995490723488135 7.999999999897957 0.43333502033815446 0.980768678551618 4.2896016606312 0.2893465508351909 0.0823888057461351 118.91653813666979 1.4859785576760778 0.053120097982717156 344.25266753169365 99999999.97650377 -7.999999999897957 3.308832982079582 EYWMDPEGEMKPGRK ddPTM_BT-474_Trastuzumab_2h_R1 3 EYWMDPEGEMKPGRK 15 2 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ;; 106.14 0.00070854 1840550000.0 3468190.0 2935100.0 3209970.0 3145920.0 2384050.0 3963020.0 4370600.0 3088660.0 3938470.0 3458460.0 False True 3449517.6503921305 3032793.0291945855 3661905.8744405927 3544193.1494415514 2687644.6361285686 3689065.755345632 4159177.3806866286 3319151.4930976857 2967886.8412941764 3237738.121863424 1.065409715226388 0.9367011521762959 1.1310074306852977 1.0946509618887128 0.8300994505947694 1.1393959661019324 1.2845935106984152 1.0251451377999052 0.9166543832723756 1.0 21.626554870107405 EYWNDPELDEGER ddPTM_BT-474_Trastuzumab_2h_R1 4 EYWNDPELDEGER 13 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 0 ;;; 162.93 9.2161e-05 836730000.0 952450.0 950040.0 853520.0 896900.0 947550.0 969650.0 924360.0 902840.0 1155740.0 997280.0 False True 947322.1150271432 981661.5070886924 973688.197071167 1010447.4480387707 1068214.8759311365 902620.3778105817 879645.1754018866 970214.5053286254 870923.3631225668 933632.7365856358 1.014662487619672 1.0514428946425993 1.042902802050426 1.0822750835987736 1.1441489078860683 0.9667831283546584 0.9421747341666855 1.039182183003535 0.9328329320452047 1.0 19.83249562254477 2.7040605073653863 24.99702702224225 0.9807853478236108 1.0657176499736147 0.5396256672829121 0.041859528154852464 530.2071257846341 384160.5366036764 0.013898645816094863 0.013104359116382382 505.89514010286706 -2.7040605073653863 0.08493230215000391 EYYDHLPELK ddPTM_BT-474_Trastuzumab_2h_R1 5 EYYDHLPELK 10 0 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ;;;; 123.79 0.00045266 9002140000.0 13038900.0 13156600.0 11709120.0 11243500.0 11369650.0 14044000.0 13386200.0 12574500.0 17462500.0 13137600.0 False True 12968700.011157973 13594509.477667367 13357662.318504473 12666925.947177965 12817507.534304725 13073171.336020019 12738658.36575007 13512873.042017201 13159100.86051173 12299147.120334769 1.0544389691636584 1.1053213157513104 1.0860641138619775 1.0299027910833858 1.0421460454857823 1.0629331617966842 1.035735099443492 1.0986837469141029 1.0699197864504897 1.0 23.55205494010736 3.776018010143486 24.27726670877826 1.0547443470373055 1.0842794693136812 0.2111384364314529 0.027746237247427412 685.4650525151415 444268.06345434487 0.007181663447575648 0.012946337383501613 5970.600460836355 -3.776018010143486 0.02953512227637578 EYYS(ph)TESEPLTNGGQKPSSSDTFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYYSTESEPLTNGGQKPSSSDTFFR 25 1 A0A0C4DGH6;A0JNW5 A0A0C4DGH6 UHRF1BP1L UHRF1-binding protein 1-like 1 EY(0.003)Y(0.016)S(0.918)T(0.053)ES(0.01)EPLTNGGQKPSSSDTFFR;EYYS(0.855)T(0.143)ES(0.002)EPLTNGGQKPSSSDTFFR 248.92 2.0729e-39 391140000.0 130390.0 108420.0 81366.0 99047.0 104816.0 115539.0 84824.0 105845.0 142199.0 119600.0 True False 129687.99472769079 112028.69415872605 92821.62555404963 111586.34004448226 118163.69630689452 107552.0608795511 80720.73906085268 113743.69137001959 107155.96181897829 111967.02560528848 1.158269535397619 1.0005507742400426 0.8290085858069399 0.9966000207762219 1.0553437109551418 0.9605690630623589 0.7209331374525684 1.0158677588792462 0.9570314227755734 1.0 16.772714394219353 2.4742960041643247 24.996031740999513 0.9164459681727606 0.9980695149969325 0.11786006908264046 0.10689841378709457 205.6468394932103 1819396.0917229 0.03763407986334941 0.03165786564666515 298.0547203081533 -2.4742960041643247 0.08162354682417194 EYYSEADASHCIQQILEAVLHCHQMGVVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 EYYSEADASHCIQQILEAVLHCHQMGVVHR 30 0 E9PF82;E9PBG7;E7EQE4;A0A5F9ZH90;H7BXS4;A0A5F9ZHY2;A0A5K1VW76;A0A5F9ZHM9;A0A5F9ZH21;A0A5F9ZHR5;D6RFJ0;A0A5F9ZH50;Q9UQM7;Q9UQM7-2;E7ETC9 E9PF82 CAMK2D;CAMK2B;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit alpha 0 28.405 0.092152 14608000.0 2496.3 4429.1 3643.6 4058.3 5204.1 6231.1 4673.3 1931.2 5403.8 3528.0 False True 2482.860198165005 4576.519916052509 4156.5872092610625 4572.080363893128 5866.81128788267 5800.358723431662 4447.234625260329 2075.3159504348973 4072.1058972102073 3302.8400195272397 0.7517349261501305 1.38563172572542 1.2584888110493544 1.3842875636911909 1.7762929034396375 1.7561730780596243 1.3464880523934355 0.6283428619506533 1.2329104265222868 1.0 11.689491375804044 1.8821433177439857 7.834823508600357 0.9246088395510454 1.4095000142983163 0.2947656010452733 0.30003659976614167 0.3213234004398832 19.586805207361444 0.13242465313799162 0.0826610984551016 76.23305385901749 -1.8821433177439857 0.48489117474727084 EYYSEADASHCIQQILESVNHCHLNGIVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 EYYSEADASHCIQQILESVNHCHLNGIVHR 30 0 Q13557;D6R938;Q13557-8;Q13557-6;Q13557-11;Q13557-12;Q13557-10;Q13557-3;Q13557-4;Q13557-9;Q13557-5 Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 0 ; 195.01 6.6404e-20 2608200000.0 0.0 17053.0 38439.0 25638.0 27111.0 23965.0 20336.0 0.0 40310.0 0.0 False True 0.0 17620.598796243805 43850.87708222254 28883.768171276646 30563.425150513445 22308.35595754197 19352.26998893589 0.0 30376.14062632654 0.0 0.0 FAAFFGNVPIFHIPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAAFFGNVPIFHIPGR 16 0 Q92620;J3KTG2 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 ; 161.21 8.5116e-09 244780000.0 168720.0 216885.0 214917.0 222356.0 200563.0 207529.0 216691.0 180145.0 237750.0 228713.0 False True 167811.63026655425 224103.88611524875 245175.4455079481 250506.24680132561 226103.5092199635 193183.00870071875 206208.8284899935 193588.3346577748 179159.69818678094 214116.34052894928 0.7837404181857177 1.0466454151123001 1.1450571446451538 1.1699538960103621 1.0559843712133383 0.902233842701976 0.963069086556303 0.9041268600964203 0.8367399598937099 1.0 17.70803537525367 2.7421297505062934 24.110503290889003 0.9179683320529809 1.053655574961969 0.23767676063987464 0.10516120367425046 261.3385249888463 1765416.8146747118 0.03381943407170539 0.03456528561563478 552.2424034509335 -2.7421297505062934 0.13568724290898804 FAALDNEEEDKEEEIIK ddPTM_BT-474_Trastuzumab_2h_R1 1 FAALDNEEEDKEEEIIK 17 1 Q5STZ8;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 205.52 7.1204e-12 135160000.0 230650.0 141100.0 125410.0 108790.0 110010.0 200820.0 182090.0 199610.0 332920.0 186380.0 False True 229408.20602762402 145796.4282032489 143066.63791673878 122562.80284550997 124019.12141964462 186937.7860794316 173281.61104864956 214505.91179904202 250876.32689944518 174485.068832054 1.3147727055570286 0.8355811140698888 0.8199362780688346 0.7024257357142665 0.710772115057111 1.0713683831558312 0.9931028036297891 1.2293654307206596 1.4378097139126533 1.0 17.412744060765203 2.0357836653028696 1.7110649253283534 1.2464290728128495 0.8726282999333932 0.33505714270382425 0.1961880278036284 0.3842596946366482 2.113502528251414 0.12035634221585767 0.06154129897695271 108.58845782210808 -2.0357836653028696 -0.37380077287945634 FAAQAAHQGTASQYFMLLLLTDGAVTDVEATR ddPTM_BT-474_Trastuzumab_2h_R1 1 FAAQAAHQGTASQYFMLLLLTDGAVTDVEATR 32 0 Q99829;B0QZ18;A6PVH9;H0Y524 Q99829 CPNE1 Copine-1 0 173.24 1.6246e-14 25666000.0 21980.0 24604.0 25727.0 24518.0 25685.0 31733.0 29783.0 24196.0 33398.0 32455.0 False True 21861.662122207574 25422.929266567917 29349.137976907277 27621.976286112822 28955.83250307764 29539.37240144707 28342.282507891316 26001.628384798478 25167.510410271763 30383.694113876547 0.7195195567817123 0.8367293710660746 0.9659502846134573 0.9091052649025182 0.9530056613442937 0.9722113542459649 0.9328122644226826 0.8557757423223684 0.8283229259728988 1.0 14.891009665971813 4.569319369640208 3.0073236679508897 0.9206358867241264 0.7165090096779992 0.6177709741087438 0.050655591709540544 0.20552325796632998 3.12963267393105 0.01320996335841152 0.08046129520604153 37095.34116572563 -4.569319369640208 -0.2041268770461272 FACHSASLTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FACHSASLTVR 11 0 Q15233;Q15233-2;C9JYS8;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 65.842 0.06434 398540000.0 856730.0 974640.0 959170.0 916370.0 831960.0 1138600.0 1100400.0 1025100.0 1384300.0 1180100.0 False True 852117.4608716507 1007080.3032176776 1094212.7987449053 1032382.3480424675 937905.1745867423 1059891.2619761026 1047169.4480637824 1101598.167352327 1043157.8136696556 1104785.0076655599 0.7712970894420423 0.9115622462560975 0.9904305282500222 0.9344644803099916 0.8489481374919822 0.959364269628967 0.9478490754291455 0.9971154203839471 0.9442179305762628 1.0 20.075334216269102 4.701656086996318 3.233410130218541 0.9509153526151369 0.7528879683849836 0.6337839910568388 0.041289539587713336 0.19468011756977047 3.3271276972907557 0.010517761896269264 0.09179879791555808 50310.2050044647 -4.701656086996318 -0.1980273842301533 FACNGTVIEHPEYGEVIQLQGDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FACNGTVIEHPEYGEVIQLQGDQR 24 0 K7EM18;P41567;O60739;K7EQP2 K7EM18 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b 0 ; 276.0 4.9133e-52 5356100000.0 753390.0 827120.0 818170.0 762130.0 749420.0 907850.0 943700.0 804880.0 891670.0 948850.0 False True 749333.831949498 854650.189195401 933361.224338874 858615.5798570499 844854.1948396511 845092.4663490294 898049.625715912 864944.2326978259 671929.8762658549 888293.5806486441 0.8435655151333237 0.962125819451857 1.050735077537452 0.9665898736204724 0.9510979401908174 0.9513661752817479 1.010982906192054 0.9737143795030374 0.7564277069020385 1.0 19.760677039916562 FADDQLIIDFDNFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FADDQLIIDFDNFVR 15 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 ; 240.59 1.7627e-17 61938000.0 67678.0 76226.0 76944.0 70089.0 71012.0 79175.0 82494.0 71299.0 80725.0 75867.0 False True 67313.62916773271 78763.13633041004 87777.04639076284 78962.26021361294 80054.95727890011 73701.8186079026 78503.450062317 76619.69342898601 60831.40540958102 71025.10310699341 0.9477441949831502 1.1089478632894052 1.2358594715242304 1.1117514337805727 1.1271360938160693 1.037686893560393 1.1052916029429494 1.078769196766456 0.8564775374974616 1.0 16.116041400323155 1.3397794870979383 6.334895674169002 0.9301031421821543 1.1002224926256017 0.4357585235101368 0.07549918158595408 0.17775127898432116 9.0975092589899 0.05181643292319764 0.018591315394378277 21.866510705606046 -1.3397794870979383 0.1701193504434474 FADQDDIGNVSFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FADQDDIGNVSFDR 14 0 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3;E9PQP7;H0YEN2 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 0 ;;; 336.07 2.9961999999999997e-68 2073560000.0 1716190.0 1833280.0 1799150.0 1619620.0 1584500.0 1865480.0 1849600.0 1733370.0 2005590.0 1887250.0 False True 1706950.223726632 1894299.616558839 2052454.6815078612 1824663.7259366217 1786276.6829327063 1736523.7584675725 1760127.7818418501 1862722.8712745144 1511339.218029132 1766804.0892439869 0.9661230886425183 1.072161666418492 1.161676438266624 1.032748190387873 1.0110213655307148 0.9828615232663565 0.9962212520093309 1.0542894272287828 0.8554084899564797 1.0 20.752710645916753 3.309079526584301 3.161177694963439 0.9903851244085555 1.0703641029974822 0.2452406363050471 0.06506740262696888 0.3682638734235483 7.416527395237567 0.019034414369235492 0.02606845070851288 2037.4151283396482 -3.309079526584301 0.07997897858892666 FAEAFEAIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAEAFEAIPR 10 0 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 148.52 5.8082e-05 519800000.0 342920.0 401380.0 333090.0 374130.0 341420.0 375960.0 372850.0 357900.0 436280.0 368740.0 False True 341073.7568219935 414739.6906606667 379986.17672981846 421494.819639587 384897.8132451148 349970.77011464565 354813.8210746831 384608.315379376 328764.63985248667 345206.6975058031 0.9880276347079271 1.2014242297651097 1.1007497232101955 1.2209925899033331 1.114977826403975 1.0138006378302162 1.0278300613467053 1.114139204593244 0.9523703978743344 1.0 18.39710092958136 2.8359834905564685 5.312055170614993 1.0364339656519475 1.1349829668428686 0.3392441963879891 0.07051984889964245 0.27499842574965455 11.925449819497473 0.021018957234633318 0.022334225863535558 685.462168525298 -2.8359834905564685 0.09854900119092114 FAEEDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 FAEEDKK 7 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;; 141.78 0.0040623000000000005 8816200000.0 12136000.0 10054200.0 7776600.0 7844800.0 8603200.0 12338100.0 13069600.0 13511700.0 24630500.0 11885300.0 False True 12070661.124436352 10388847.969107766 8871477.684581075 8837950.875654545 9698766.52483853 11485196.187763346 12437373.517279543 14520011.665022388 18560643.30679076 11126769.978482738 1.0848306514629975 0.933680483122956 0.7973093450962848 0.7942961787424044 0.8716605576995191 1.0322129611714579 1.117788319640946 1.3049619694755619 1.6681070375934668 1.0 23.407531513645004 2.0658032172951137 1.703031786954906 1.3611872174312296 0.8930289251202701 0.5336623869321793 0.17128946168836867 0.2602314127134457 1.4281774423558418 0.1000971682430557 0.05251845369041877 116.35986730032359 -2.0658032172951137 -0.4681582923109595 FAEHVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 FAEHVFR 7 0 P37235;E9PC71;P61601;P84074;E5RI78;E5RIA5;E5RIZ1;E5RIG4;E5RHC8;E5RK89;E5RHE8;E5RI95;E5RGZ0;E5RJJ6;E5RJT1;E5RFL9;E5RGA9;A0A1B0GXG3 P37235 HPCAL1;NCALD;HPCA Hippocalcin-like protein 1;Neurocalcin-delta;Neuron-specific calcium-binding protein hippocalcin 0 102.72 0.0085375 350420000.0 283320.0 352310.0 300590.0 311260.0 327550.0 400640.0 336590.0 238810.0 381920.0 362500.0 False True 281794.63659981114 364036.42537410755 342910.45922488277 350665.48408579355 369261.55095904507 372944.6998051161 320307.8558013342 256631.2148526085 287800.93346580624 339364.93964813626 0.8303587191180806 1.072698982256539 1.010447512876323 1.0332990922673804 1.0880957571571963 1.0989488194973716 0.943844865452038 0.7562101586530755 0.848057356084594 1.0 18.372477999810908 1.9896410194320457 7.932001842774982 0.8429169444317579 1.027207448413805 0.3596384716672302 0.09067361548753736 0.12641118085539846 56.88210687189993 0.03513862947013619 0.023815175733615628 97.64297867362806 -1.9896410194320457 0.18429050398204705 FAELETILGDIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FAELETILGDIDR 13 0 Q5JY65;Q9BZJ0-2;Q9BZJ0-3;Q9BZJ0 Q5JY65 CRNKL1 Crooked neck-like protein 1 0 ;;; 202.16 2.2355e-07 171851000.0 143438.0 173696.0 162380.0 155819.0 156075.0 153596.0 174858.0 150398.0 193394.0 182376.0 False True 142665.7457454598 179477.36635855076 185241.69256773824 175545.6694235178 175950.22612099847 142978.27004609286 166399.45051757226 161621.46246556946 145734.64004683186 170736.6075400509 0.8355896711371268 1.0511944037335372 1.0849559168164027 1.0281665540434193 1.0305360324072539 0.8374201180760454 0.9745973808138291 0.946612825416815 0.8535641075839336 1.0 17.381412893401336 2.7783673828663598 24.955997563976663 0.9258339166157146 1.014202495433797 0.22159811429416332 0.07751706182626399 754.8912408839536 473261.6098488117 0.023264456189389028 0.024675276303656412 600.2986723726832 -2.7783673828663598 0.08836857881808236 FAELPEFRPEEVLPS(ph)PTLQSLAT(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 FAELPEFRPEEVLPS(0.954)PT(0.046)LQS(0.016)LAT(0.593)S(0.39)PR;FAELPEFRPEEVLPS(1)PTLQSLAT(0.671)S(0.329)PR 239.41 1.1191999999999998e-44 1718640000.0 365550.0 419580.0 404490.0 400440.0 402940.0 431640.0 423240.0 358960.0 423620.0 398540.0 True False 363581.9194164229 433545.46665853384 461438.67610989383 451135.66294196143 454252.020587507 401801.7427712672 402766.26426618925 385747.4179619468 319224.5272171784 373104.83599273977 0.9744765662150191 1.161993694091304 1.2367534043940211 1.2091391464857348 1.217491645153445 1.0769137893969454 1.0794989113301836 1.0338847979162968 0.8555893583308852 1.0 18.509221534182842 1.8077620524203493 1.3489659500173552 0.936299136054742 1.1607559494545308 0.5218407524820284 0.08084763034696776 0.3298938538624855 1.1281753254799562 0.06441017081464252 0.026218595075491645 64.23356886655628 -1.8077620524203493 0.22445681339978873 FAELPEFRPEEVLPS(ph)PTLQSLATS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 FAELPEFRPEEVLPS(0.991)PT(0.009)LQS(0.016)LAT(0.309)S(0.675)PR;FAELPEFRPEEVLPS(0.962)PT(0.038)LQSLAT(0.111)S(0.889)PR 238.65 2.9518e-45 2028380000.0 757020.0 822290.0 745150.0 848610.0 911650.0 871410.0 818980.0 810930.0 891440.0 809940.0 True False 752944.2884328294 849659.4255651985 850060.6430400921 956043.9389900563 1027743.2237271066 811171.4777784958 779362.8085925808 871445.7144191038 671756.5566840131 758248.9357754793 0.9930040820469801 1.1205547221721208 1.1210838590504777 1.2608576074192406 1.3554166385687163 1.0697957352869758 1.0278455686792463 1.1492870920126719 0.8859314203942689 1.0 19.532312042423065 1.551458581560735 1.2289893357222448 0.960823508789591 1.1588150377371167 0.29851398257048223 0.1084857931574843 0.5716920647772269 1.653605847286171 0.10079389782722838 0.03556515083286161 35.600703621068945 -1.551458581560735 0.1979915289475257 FAELPEFRPEEVLPSPTLQSLAT(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 1 FAELPEFRPEEVLPSPTLQSLAT(0.5)S(0.5)PR 235.65 1.0329999999999999e-44 723310000.0 205470.0 265170.0 247210.0 292130.0 214930.0 289060.0 316620.0 268980.0 266610.0 279550.0 True False 204363.77234986296 273996.0231513503 282015.01921216014 329113.62804723653 242300.06151008268 269077.96257404867 301303.88099414227 289052.6534527642 200907.5378909682 261708.87966520418 0.7808820725200422 1.0469496621660859 1.077590563885081 1.2575562146315444 0.9258381367114843 1.0281575578110744 1.1512940691182918 1.1044816432004143 0.7676756636915905 1.0 17.99760334965051 4.738126273294633 6.006702974055991 1.0550407179460208 0.7735632291720349 0.2721286392400052 0.12500209190822922 0.160873528101101 28.284762770342446 0.029065302682637503 0.18537663400317855 54717.503364766 -4.738126273294633 -0.28147748877398593 FAELPEFRPEEVLPSPTLQSLATS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 1 FAELPEFRPEEVLPSPTLQS(0.001)LAT(0.087)S(0.912)PR;FAELPEFRPEEVLPSPTLQSLAT(0.014)S(0.986)PR 233.58 4.3716e-45 1107690000.0 302050.0 433220.0 377140.0 360570.0 362520.0 405430.0 425100.0 375550.0 434510.0 437740.0 True False 300423.7963609096 447639.4658129793 430238.0338403547 406218.12502992485 408684.7731756165 377403.5783795637 404536.28896029975 403575.4480042596 327430.832635702 409803.0584319315 0.7330931045523423 1.0923282698909689 1.0498653560239777 0.9912520579623686 0.99727116420118 0.9209389012948292 0.987148047426038 0.9848034066619679 0.7989955806786357 1.0 18.64457122591168 FAELVYTGFWHSPECEFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAELVYTGFWHSPECEFVR 19 0 P00966 P00966 ASS1 Argininosuccinate synthase 0 ; 266.28 1.6925e-31 829170000.0 416720.0 501070.0 477960.0 528290.0 515860.0 475520.0 464000.0 528510.0 624950.0 518090.0 False True 414476.42582194484 517747.81204678875 545252.613497205 595171.4598332066 581551.7132582298 442648.42165367596 441554.5473478681 567950.0999194016 470939.44640096213 485025.05264083546 0.8545464271695418 1.0674661220648014 1.1241741236425749 1.2270942636728817 1.19901376246821 0.9126300162096169 0.9103747217668824 1.1709706474481283 0.9709590130176146 1.0 18.88769974212263 2.7388520646045813 24.999745269847065 1.0104328869384487 1.1019788074165366 0.15061316075535747 0.11618633866833318 62.12237320646094 5328843.92815561 0.039286453206795025 0.03929159948207107 548.0902350400465 -2.7388520646045813 0.09154592047808796 FAEMEER ddPTM_BT-474_Trastuzumab_2h_R1 2 FAEMEER 7 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 116.54 0.012638 945780000.0 1246280.0 1618180.0 1276130.0 1458170.0 1339050.0 1542930.0 1616410.0 1407940.0 2051260.0 1558580.0 False True 1239570.1669547255 1672040.143089533 1455798.0116791974 1642774.1724904599 1509570.0803288366 1436270.8807665454 1538218.0730141564 1513007.6321744584 1545754.4584757776 1459110.090032528 0.8495384792569639 1.1459314513082823 0.997730069597931 1.125874040425447 1.0345827163015395 0.9843471651508672 1.054216596487154 1.0369386398669402 1.0593816525806619 1.0 20.476657308201702 4.757379130679835 24.93621447353859 1.0480356593263724 0.8495382987135178 0.588211000505545 0.05000776532614979 2797.3219875060017 3706640.5041915495 0.011023900335572372 0.3974437337005577 57197.77442884819 -4.757379130679835 -0.1984973606128546 FAEVECLAESHQHLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 FAEVECLAESHQHLSK 16 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 141.86 9.042299999999998e-07 318618000.0 197183.0 343910.0 397800.0 392520.0 360420.0 457000.0 428490.0 124708.0 396660.0 349380.0 False True 196121.38863709074 355356.83645201486 453806.78226041596 442212.9917540175 406317.3506232916 425408.6656622854 407762.30170924205 134014.34421439283 298908.45797168656 327082.26928073296 0.5996087439052247 1.0864448177929633 1.3874392618663045 1.35199316284084 1.2422481705193003 1.3006167121127543 1.2466658697395236 0.4097267164896946 0.9138632266096179 1.0 18.31929402928986 1.7598266186040856 24.999999999988113 0.7208717680425212 1.1928385596666458 0.3302520526587823 0.2560010301202317 10.032632796674028 11804.124622291445 0.11894412433804472 0.06596228021004472 57.52102529388252 -1.7598266186040856 0.4719667916241246 FAEVEHVVNAILFLLSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FAEVEHVVNAILFLLSDR 18 0 Q7Z4W1 Q7Z4W1 DCXR L-xylulose reductase 0 103.1 0.00054524 284640000.0 52932.0 68941.0 65173.0 64970.0 65674.0 58749.0 64474.0 55357.0 65676.0 59559.0 False True 52647.01999329807 71235.65950928545 74348.79190612881 73195.19533847585 74037.19461970491 54687.8199102705 61355.146305401875 59488.02043715029 49491.029813312445 55757.89362897472 0.9442074756916556 1.277588783810651 1.3334218182785385 1.3127324325687906 1.3278334205442672 0.9808085698892298 1.100384937667705 1.0668986320214435 0.8876058005820061 1.0 15.76688844096326 2.733243905804948 24.96163634059266 1.0236065388219273 1.2506163807736757 0.48646249551620124 0.11829869917971987 394.4525008157682 1851925.5887928864 0.03838095756194786 0.03715659997206525 541.0581033695817 -2.733243905804948 0.22700984195174834 FAEWCLEYGEHGCR ddPTM_BT-474_Trastuzumab_2h_R1 1 FAEWCLEYGEHGCR 14 0 O43813;H7C2E3 O43813 LANCL1 LanC-like protein 1 0 130.24 6.324899999999999e-05 167860000.0 75357.0 81876.0 70416.0 70846.0 70886.0 82341.0 64802.0 55742.0 81412.0 69436.0 False True 74951.28628494975 84601.19316491293 80329.96073315591 79815.09633599594 79912.91192576064 76648.96047986497 61667.27969232023 59901.751092140694 61349.103464909334 65004.53503284962 1.1530162664354664 1.3014660149812665 1.235759331138384 1.227838893019724 1.2293436432608458 1.1791325088492812 0.9486611920407872 0.921501108528347 0.9437665146578922 1.0 15.988252750631663 2.290252727469908 3.7098234771759486 0.9413581097702187 1.2314646016088975 0.9194183856725289 0.03895991892477707 0.0524410344774046 1.4827994209117719 0.014045830011897964 0.011058386110616908 195.09795962211194 -2.290252727469908 0.29010649183867876 FAEYGEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 FAEYGEIK 8 0 Q9Y5S9;Q9Y5S9-2;A0A0J9YW13 Q9Y5S9 RBM8A RNA-binding protein 8A 0 83.265 0.04809 0.0 88808.0 79528.0 75856.0 83330.0 73192.0 80622.0 67974.0 64243.0 101040.0 86288.0 False True 88329.8675954963 82175.04140430882 86535.8654478283 93879.56945598252 82512.56735702786 75048.79090377426 64685.83793410351 69037.13887934413 76140.04586663438 80781.02596512652 1.0934482019778833 1.0172567186728243 1.0712399900093639 1.1621487637023908 1.0214350012421092 0.9290398333907409 0.8007553402704818 0.8546207237965475 0.9425486363531002 1.0 16.301728848757083 2.7617685335237154 2.930454254846028 0.8803802887422679 1.080274609585017 0.6533489952195246 0.061433081001383255 0.14782486405576964 2.5602233852782845 0.020503552047149574 0.020787377951537993 577.7880209201143 -2.7617685335237154 0.19989432084274916 FAGHSEAGGGSGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FAGHSEAGGGSGDR 14 0 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 ; 178.58 1.9657e-06 517820000.0 228565.0 288068.0 260224.0 256181.0 277670.0 276158.0 269855.0 214921.0 277332.0 250794.0 False True 227334.43143595863 297656.16923921666 296861.27729244437 288613.48833317 313029.6286209684 257067.84746600784 256801.0827037908 230959.4963667247 208987.24465840738 234788.112204454 0.9682535853348286 1.2677650773903621 1.2643795058667064 1.229250857819602 1.333243091747258 1.0948929443333681 1.0937567506832198 0.9836933147859065 0.8901099919250632 1.0 17.840999838175 2.0510057085713385 1.542885209985862 0.9478161598808158 1.215728263430529 0.5458721822732542 0.09758755686987373 0.2859119200917829 1.2795232150414626 0.06160873451460026 0.031042952827904403 112.4619756401846 -2.0510057085713385 0.2679121035497133 FAGVDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 FAGVDIR 7 0 P62249;M0R210;M0R3H0;M0R1M5;Q6IPX4;M0QX76 P62249 RPS16 40S ribosomal protein S16 0 ;; 118.06 0.011847 1111270000.0 2431540.0 2954990.0 2836600.0 2873180.0 2673220.0 2938500.0 2870840.0 2512430.0 3302870.0 2939150.0 False True 2418448.8588094884 3053345.0558208236 3235968.623830809 3236924.29340622 3013638.721583698 2735368.411484961 2731966.5015261928 2699920.284461038 2488921.944690525 2751570.930667084 0.8789338598744265 1.1096733948561444 1.1760440509691998 1.1763913687740073 1.0952429712044816 0.9941115386118012 0.9928751867079296 0.981228669909838 0.904545805797969 1.0 21.391824088615717 2.6808702557520276 3.6381396917620115 0.9727796412708535 1.099023076171189 0.32174693006937083 0.08147023576790118 0.28440503551103213 7.623539136206843 0.028173475712192933 0.0270443154416448 479.59015103188193 -2.6808702557520276 0.12624343490033552 FAHGNAELHEWEER ddPTM_BT-474_Trastuzumab_2h_R1 1 FAHGNAELHEWEER 14 0 Q8IWR0;Q8IWR0-2 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 0 115.82 0.0002299 93263000.0 32306.0 41198.0 36520.0 45279.0 49923.0 42218.0 39720.0 31890.0 36205.0 35293.0 False True 32132.068085534036 42569.250525283074 41661.69856246952 51011.316757439534 56280.39813319622 39299.56903048222 37798.59185486497 34269.793734138824 27282.762872144696 33040.57052414251 0.972503427628629 1.2883933252356532 1.260925519794751 1.543899392420174 1.7033724672542363 1.1894337297162076 1.144005422885958 1.0372034498949747 0.8257352230709629 1.0 15.011950978087823 1.9736653595033367 1.6988718586539941 0.9368124648467229 1.3524395421801683 0.44818579306700124 0.18860511845288305 0.3577164328625259 1.9221990136953042 0.12930449781979836 0.06251896582276682 94.116411413237 -1.9736653595033367 0.4156270773334454 FAHIDGDHLTLLNVYHAFK ddPTM_BT-474_Trastuzumab_2h_R1 3 FAHIDGDHLTLLNVYHAFK 19 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;; 333.77 8.008799999999998e-76 5095688000.0 3196322.3 3724875.5 3662616.2 3512526.8 3555177.5 4433871.7 4206170.0 1658019.1 5050806.5 3361837.9 False True 3179113.655881593 3848855.729282714 4178280.724929286 3957212.332732515 4007908.281437037 4127368.5855903067 4002701.4879702246 1781748.9044923945 3806102.9154146444 3147282.527007769 1.0101138453890528 1.222913957121592 1.3275836182720218 1.2573425800748732 1.2734504281213974 1.3114070790188448 1.2717960505997954 0.5661229613810252 1.209329916444851 1.0 21.585675262424328 1.776133564488421 24.99999999608798 0.8811578815084552 1.246789380825743 0.40947139196446636 0.17023613135513563 36.543690078325206 24325.210581889634 0.07450285564097493 0.04136051325188693 59.72189292028036 -1.776133564488421 0.3656314993172879 FAHTNVESLVNEYDDNGEGIILFR ddPTM_BT-474_Trastuzumab_2h_R1 8 FAHTNVESLVNEYDDNGEGIILFR 24 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;;;; 345.43 9.146399999999996e-102 7039804000.0 1681968.7 2034163.1 1971790.4 1885479.2 1855716.9 1990160.3 1998886.5 1716115.3 1938895.1 1880299.5 False True 1672913.16740349 2101868.989105938 2249401.3492106046 2124180.6733974623 2092031.447519191 1852585.2027944284 1902192.723507035 1844180.5379429227 1461080.3824682578 1760297.1761046075 0.9503583770471693 1.1940421297256187 1.277853182829245 1.2067170829064777 1.1884535610905678 1.0524275264100842 1.080608859304331 1.0476529548402402 0.8300191594361971 1.0 20.7473875767666 1.8627565501904964 1.1280167682084983 0.9316627994384743 1.167419250262387 0.45176913568884713 0.09579753768697026 0.4367117029309698 1.0250541486631755 0.07866574543065653 0.03336999870467133 72.90487172940841 -1.8627565501904964 0.23575645082391272 FAHTNVESLVNEYDDNGEGIILFRPSHLTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 FAHTNVESLVNEYDDNGEGIILFRPSHLTNK 31 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 330.17 7.666399999999996e-106 5515900000.0 1465290.0 1768700.0 2045590.0 2019360.0 2225150.0 2349140.0 2408020.0 2095320.0 2880950.0 2300020.0 False True 1457401.0414490218 1827570.110298272 2333591.29141298 2275010.7689503566 2508509.663002655 2186749.4810807477 2291534.8730702903 2251683.4182193712 2170978.475252183 2153230.7544538067 0.6768438721370155 0.8487572019478504 1.0837627535210101 1.056556880512995 1.1649980652626193 1.015566713673214 1.0642309786493673 1.0457232294132537 1.0082423682467225 1.0 21.03807150586007 4.456934928580588 2.735331663468745 1.059352167226918 0.6817825914976464 0.872630763733015 0.04668901527551752 0.08927190306667193 1.2278963362786313 0.011648932243699861 0.05666647167877676 28637.48855165743 -4.456934928580588 -0.3775695757292715 FAKPVYPGQTLQTEMWK ddPTM_BT-474_Trastuzumab_2h_R1 1 FAKPVYPGQTLQTEMWK 17 1 P51659-3;P51659;P51659-2;A0A2R8YD50;A0A2R8Y7L2;E7ET17;E7EPL9 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 216.71 4.7475e-15 595670000.0 458100.0 477850.0 438950.0 368620.0 471080.0 572010.0 496840.0 523560.0 721380.0 461400.0 False True 455633.6404996943 493754.9483835756 500750.34457820375 415287.25420453993 531069.2456900849 532468.2950667043 472805.9510868861 562630.7057838108 543605.5649967617 431953.05697558576 1.0548221227786032 1.143075481027289 1.1592702875731853 0.9614175603068187 1.2294605562198886 1.2326994483958467 1.0945771616882187 1.3025274313907935 1.2584829675773928 1.0 18.72051500870423 3.187052500347605 24.999943046933076 1.2038240474159498 1.0898629570326566 0.21195289684131213 0.09647551725081553 139.17147418512036 67547.57245741814 0.02686211260112645 0.03210640202753937 1538.3405937006996 -3.187052500347605 -0.11396109038329327 FALPSPQHILGLPVGQHIYLSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FALPSPQHILGLPVGQHIYLSAR 23 0 P00387-2;P00387;P00387-3;B1AHF3 P00387-2 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 132.26 1.593e-05 170000000.0 44441.0 73239.0 69625.0 64854.0 88332.0 109290.0 67609.0 56363.0 57528.0 85667.0 False True 44201.734593859284 75676.71584108949 79427.59480865119 73064.50975036959 99580.55661521717 101735.03954098742 64338.49437853892 60569.09326551483 43350.99523570612 80199.65871679141 0.5511461682143638 0.94360396355708 0.9903732270125163 0.9110326766898331 1.2416581093800587 1.2685221005770582 0.8022290294992036 0.7552288156163123 0.5405384004038126 1.0 16.291308476969792 -2.4354571531329148 2.2430345682780444 1.9323889893183244 0.9016556587301534 0.017425846915576915 0.23334526266224112 16712510.457190037 1975017.8614222896 79544742.62055206 0.06017409187345211 0.0036689589007505067 2.4354571531329148 -1.030733330588171 FAMEPEEFDSDTLR ddPTM_BT-474_Trastuzumab_2h_R1 6 FAMEPEEFDSDTLR 14 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;;;;; 327.29 5.886599999999998e-68 2597790000.0 1478090.0 2061920.0 1934530.0 1993070.0 1940240.0 1956730.0 1999480.0 1795970.0 2198530.0 1876850.0 False True 1470132.1276712357 2130549.7607430364 2206895.0087638055 2245392.4576459313 2187318.0632965295 1821465.860746969 1902757.5136446462 1929994.4011508734 1656731.7402926737 1757067.8261478753 0.836696287868576 1.2125597709076308 1.2560101413968254 1.2779201942184777 1.2448683145555726 1.0366508529954006 1.0829163708587022 1.0984177004607245 0.9428957241365153 1.0 20.744738452507978 2.7225066657483032 23.806406654931493 1.0473922472305988 1.1794807896772823 0.2141504227204798 0.1247255044956931 712.651547743933 1056788.8641140899 0.0409479485590164 0.0387417927105264 527.845308328139 -2.7225066657483032 0.13208854244668355 FAPPLS(ph)PLSSDMLIMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 FAPPLSPLSSDMLIMPK 17 0 Q5H9M0 Q5H9M0 MUM1L1 PWWP domain-containing protein MUM1L1 1 FAPPLS(0.997)PLS(0.003)SDMLIMPK;FAPPLS(0.997)PLS(0.002)SDMLIMPK 217.32 5.2535e-15 154842000.0 140730.0 147664.0 124169.0 129398.0 124130.0 154130.0 148299.0 148944.0 175555.0 141993.0 True False 139972.32531657282 152578.906975227 141650.9159037043 145779.77353252406 139937.21972384758 143475.35588299375 141125.2108128049 160058.9576023069 132291.82256647886 132930.88517367648 1.0529706857341437 1.1478062963011195 1.0655982296261322 1.0966584126936363 1.052706596672528 1.0793229556512827 1.0616435046559902 1.2040765198635903 0.995192519734126 1.0 17.020316813890684 FAQHGTFEYEYSQR ddPTM_BT-474_Trastuzumab_2h_R1 5 FAQHGTFEYEYSQR 14 0 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;;; 222.55 3.8512e-12 10358940000.0 1933905.0 2554613.0 2402794.0 2520074.0 2473029.0 2486315.0 2419852.0 2254124.0 2667399.0 2491967.0 False True 1923493.0703570456 2639641.749408829 2741086.509740153 2839115.110010989 2787954.584358716 2314441.8962059673 2302794.514027661 2422338.1790897464 2010054.2577653895 2332927.5325797144 0.82449756518158 1.1314718149388698 1.1749557032785767 1.2169752683537238 1.1950455148839707 0.9920762063477788 0.9870836028418197 1.0383255138710472 0.8616016698738616 1.0 21.153710063096504 2.6554523257836693 8.02743559182532 0.9835126192521736 1.1194309160344107 0.25897123876113004 0.11119643242645316 0.45492659527080426 39.89699220401299 0.036843011695802154 0.034714771461793505 452.3268059114773 -2.6554523257836693 0.1359182967822371 FAQPGSFEYEYAMR ddPTM_BT-474_Trastuzumab_2h_R1 4 FAQPGSFEYEYAMR 14 0 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;; 151.26 1.6258e-05 2112160000.0 2194981.0 2222569.0 2178940.0 2361592.0 2007415.0 2880536.0 2729832.0 2450023.0 3387572.0 3048994.0 False True 2183163.466181315 2296545.865593667 2485715.8123140004 2660569.305060515 2263047.401369112 2681411.3263723776 2597779.597189069 2632856.1572247082 2552750.2717391807 2854404.5925449096 0.764840230387545 0.8045621393658595 0.8708351362684026 0.9320925673989419 0.7928264294696361 0.9393942727585455 0.9100950874217025 0.9223836607119964 0.8943197045038447 1.0 21.444758410896135 7.999999999999999 0.17035894056864925 0.9854181729518667 0.14378134644308854 0.6324254807928282 0.042907290475120395 38.62054185770832 0.4175219837263335 0.10665949857281998 8.300107870268347 99999999.99999979 -7.999999999999999 -0.8416368265087781 FAQPGTFEFEYASR ddPTM_BT-474_Trastuzumab_2h_R1 4 FAQPGTFEFEYASR 14 0 Q8WXF1;Q8WXF1-2 Q8WXF1 PSPC1 Paraspeckle component 1 0 ;;; 182.1 3.1184e-07 419086000.0 240191.0 271793.0 246289.0 247437.0 243529.0 268396.0 238300.0 240948.0 257541.0 260718.0 False True 238897.83834372897 280839.4657026618 280964.35041763564 278762.49882971315 274540.9746405293 249842.4162562251 226772.51860559685 258928.76326915275 194073.47142259416 244078.75402809033 0.9787735900857429 1.1506100431434552 1.1511217006020125 1.1421006303466756 1.1248048841192182 1.0236139448150061 0.9290956908912205 1.060841056404907 0.7951264426737396 1.0 17.896987194822938 2.5545947559438065 3.2865511159093956 0.9624331111763111 1.1157453635591543 0.48040274543579065 0.07906846707933948 0.22820994975421777 4.778479252432537 0.02700112145348561 0.024460052568545717 358.58717759187954 -2.5545947559438065 0.15331225238284318 FAQSAPGS(ph)PLSSQPVLITVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 FAQSAPGSPLSSQPVLITVQR 21 0 Q01167;Q01167-2 Q01167 FOXK2 Forkhead box protein K2 1 FAQSAPGS(0.979)PLS(0.02)S(0.001)QPVLITVQR;FAQSAPGS(0.99)PLS(0.009)S(0.001)QPVLITVQR;FAQSAPGS(0.998)PLS(0.002)SQPVLITVQR;FAQSAPGS(0.995)PLS(0.005)SQPVLITVQR 308.4 1.9188999999999995e-66 1722670000.0 767170.0 804340.0 797040.0 832740.0 777230.0 924210.0 945240.0 724370.0 923350.0 918990.0 True False 763039.6419605997 831111.9706662014 909256.3040041266 938164.7986172438 876205.6334968668 860321.5380563253 899515.1300325408 778426.1676763291 695802.7647561057 860339.2714130764 0.8869055119468561 0.9660281685167408 1.056857839943428 1.0904591128059768 1.018441982844431 0.9999793879492191 1.0455353602017021 0.9047897655512017 0.808753927521261 1.0 19.714546167580774 1.6474143059515205 5.57626495375136 0.8895879601528892 1.0122149077552338 0.32709946252509636 0.06787958416563288 0.1475835219761054 9.823659627160586 0.03656171167351144 0.017726860415776657 44.40320372791162 -1.6474143059515205 0.1226269476023446 FARPDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 FARPDFR 7 1 F8WF90;C9JQU6;F8WF33;O75915 F8WF90 ARL6IP5 PRA1 family protein 3 0 88.94200000000002 0.031145 0.0 120040.0 167610.0 192660.0 147620.0 175430.0 193810.0 161730.0 131540.0 212130.0 158070.0 False True 119393.71797769776 173188.7975276152 219784.85336926047 166308.6768641804 197769.97064492558 180412.37087966665 153906.5020314026 141356.18274658578 159853.40389636956 147981.83726946442 0.8068133237208717 1.1703382031421241 1.4852150603391134 1.123845195686712 1.3364475958275914 1.2191521216968575 1.0400364319788096 0.9552265693876081 1.0802231330949612 1.0 17.17506059022852 2.1818795283219683 4.9681700631166725 1.0057368512651306 1.2066178803639953 0.20299035599157433 0.1646626774557027 0.2970801775820381 15.02263957268444 0.0637166178054778 0.04712737042365552 152.01257939857044 -2.1818795283219683 0.20088102909886474 FAS(ph)AENIPDLPYDYSSSLESVADETSPER ddPTM_BT-474_Trastuzumab_2h_R1 2 FASAENIPDLPYDYSSSLESVADETSPER 29 0 P50747 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 FAS(1)AENIPDLPYDYSSSLESVADETSPER;FAS(1)AENIPDLPYDYSSSLESVADETSPER 206.63 1.2130999999999998e-25 86026000.0 272647.0 259913.0 235656.0 249671.0 246988.0 296957.0 277088.0 268096.0 339117.0 281198.0 True False 271179.0988459292 268564.0470842737 268834.31644132885 281279.32300065533 278440.4577874304 276429.0615515876 263684.19486104755 288102.6848839036 255546.1592849906 263251.70289428026 1.0301133700731748 1.0201797144390243 1.0212063720221802 1.0684805450759602 1.0576967013932281 1.0500561193429365 1.0016428838332756 1.0944000806695762 0.9707293684159599 1.0 18.006083338068382 FAS(ph)DDEHDEHDENGATGPVK ddPTM_BT-474_Trastuzumab_2h_R1 10 FASDDEHDEHDENGATGPVK 20 0 P05455 P05455 SSB Lupus La protein 1 FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK 277.91 8.6221e-45 49409040000.0 19314670.0 13420890.0 12667530.0 11107660.0 11582040.0 16494330.0 14803120.0 8396578.0 19841510.0 12388480.0 True False 19210681.962781593 13867596.210550671 14451008.115855427 12513888.617105972 13056944.141870562 15354115.790576372 14087036.532190047 9023173.287319157 14951835.723112483 11597836.60008865 1.6564021916496696 1.1957054309977666 1.2460089423699043 1.078984732118947 1.1258085962144664 1.3238775747589866 1.214626228833261 0.7780048640494027 1.2891917896996579 1.0 23.467352381857076 7.964989488240968 0.8648031981935049 1.0985212693645778 199.99998266885075 0.5156180848141234 0.15109991115374355 567.4409105826222 1.5608579451716915 0.05066270935270739 222138.86305905314 92254909.7303538 -7.964989488240968 198.90146139948618 FAS(ph)DDEHDEHDENGATGPVKR ddPTM_BT-474_Trastuzumab_2h_R1 9 FASDDEHDEHDENGATGPVKR 21 1 P05455 P05455 SSB Lupus La protein 1 FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR 241.29 2.5207e-30 24789066200.0 3438266.4 3062424.4 2770194.1 2691122.4 2846952.7 3555475.7 3461222.3 1791507.4 5134303.0 2996089.7 True False 3419755.1557297083 3164355.3448793544 3160213.35032124 3031818.2199130007 3209495.25113431 3309694.0335485362 3293789.7541957917 1925198.7792782472 3869022.821785419 2804876.690264558 1.2192176460374644 1.1281620171975868 1.1266853053790276 1.0809096280189905 1.1442553828744564 1.1799784443416526 1.1743082202608768 0.6863755493995214 1.379391413253354 1.0 21.419505916894714 FAS(ph)ENDLPEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 FASENDLPEWK 11 0 P43487;F6WQW2;P43487-2;C9JXG8;C9JJ34;C9JGV6;C9JDM3;C9JIC6 P43487 RANBP1 Ran-specific GTPase-activating protein 1 FAS(1)ENDLPEWK 161.21 2.7879e-05 85643000.0 446710.0 225450.0 200100.0 219570.0 179380.0 313470.0 253460.0 242330.0 435280.0 346990.0 True False 444304.96299414674 232953.96696259733 228272.34069962098 247367.53948698097 202222.9797314412 291800.5567290082 241199.171488773 260413.89512680657 328011.07645317307 324844.801126915 1.367745340091065 0.7171238885598897 0.7027120024938811 0.7614945310155539 0.622521828977752 0.8982768254770481 0.7425058694245129 0.801656342423853 1.0097470401720268 1.0 18.309391090661816 1.238273129933266 24.713586466323218 1.004873629581663 0.8081400586489589 0.11168315312071109 0.19537375767122878 12.57245156221164 1079723.3075523956 0.1460289609794092 0.04516999332484814 17.30904591383045 -1.238273129933266 -0.19673357093270405 FASEAEDKIR ddPTM_BT-474_Trastuzumab_2h_R1 3 FASEAEDKIR 10 1 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;Q9P2J5-3 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ;; 103.18 0.0025979 663560000.0 671070.0 1114710.0 1004190.0 1161060.0 1042470.0 934400.0 970590.0 816590.0 1101440.0 1001610.0 False True 667457.0336828857 1151812.4484935752 1145571.223424051 1308050.0769538356 1175222.3752962179 869807.1273410068 923638.853686137 877528.092360001 830004.8705398444 937686.3922785369 0.7118126477883445 1.2283557253024877 1.2216997418938362 1.394976068464992 1.253321350265603 0.9276098432306493 0.9850189373461365 0.9358439021682358 0.88516254194856 1.0 19.838745970786125 2.730295982122809 24.193760328890324 0.9454468628434026 1.1819737862245503 0.2863683664515849 0.1684719456689812 493.93929537072574 1445946.6104940372 0.05498229276448037 0.052675959732281306 537.3979211882674 -2.730295982122809 0.23652692338114767 FASTVFPSDHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 FASTVFPSDHIPSR 14 0 J3KN16;Q5VYK3;R4GMY1 J3KN16 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog 0 61.657 0.092512 0.0 130490.0 145600.0 160790.0 185880.0 157210.0 184460.0 162850.0 162860.0 187400.0 176380.0 False True 129787.45633880181 150446.20798294124 183427.83438826608 209412.38894129416 177229.7616433265 171708.71437213398 154972.323352587 175013.44018632313 141217.781031347 165123.27739348475 0.7860033932679368 0.9111144737300216 1.1108538861614405 1.2682184622720971 1.0733178534301513 1.0398819420411352 0.9385249965896191 1.059895630397829 0.8552263694162784 1.0 17.333183985439028 1.2539476620210854 24.9843343282472 0.927613138393753 1.0301390518645743 0.08292364279596343 0.12596960228900608 535.6711636450308 869790.5971063421 0.090226942526868 0.03268091768457152 17.94517351759233 -1.2539476620210854 0.1025259134708213 FATLAELVQYYMEHHGQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FATLAELVQYYMEHHGQLK 19 0 Q06124;Q06124-1;Q06124-3;A0A1W2PPU4 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 228.35 6.1144e-20 1737430000.0 1256260.0 1299010.0 1234290.0 1162700.0 1141840.0 1461900.0 1442060.0 1126450.0 1825340.0 1433390.0 False True 1249496.4357436073 1342246.7625818711 1408067.3033589944 1309897.700785684 1287246.555784082 1360842.2939424403 1372302.0485958352 1210511.4189972004 1375509.4153028757 1341909.8230130817 0.9311329377841707 1.0002510895762227 1.0493009881970794 0.9761443565890897 0.959264574793662 1.0141086014907084 1.0226484858084666 0.9020810476512919 1.0250386365116178 1.0 20.355856294317523 FATVEVTDKPVDEALR ddPTM_BT-474_Trastuzumab_2h_R1 6 FATVEVTDKPVDEALR 16 1 Q9NRV9;A0A3B3IRV5;F5GWX2 Q9NRV9 HEBP1 Heme-binding protein 1 0 ;;;;; 268.12 1.7597999999999997e-27 2947660000.0 2929640.0 2772010.0 2511560.0 2410860.0 2411850.0 3213700.0 2966510.0 2878070.0 4134750.0 3199730.0 False True 2913867.1437536003 2864274.677134569 2865165.8171291314 2716074.6288089533 2718984.80134506 2991544.4832360796 2823008.5781313055 3092846.1979433317 3115796.265311429 2995520.4919733256 0.9727415157270597 0.9561859732923084 0.956483464161408 0.9067120842894703 0.9076835924276735 0.9986726818434726 0.9424100371523827 1.0324904156826153 1.0401518779992958 1.0 21.514375272153597 1.7304408932150637 6.197144902641147 1.026857641443686 0.9479463181720316 0.6084579013897202 0.027674881424826873 0.09401437738161582 9.5400102756827 0.014408336206870789 0.007466183845439217 53.757726473669436 -1.7304408932150637 -0.07891132327165451 FAVLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FAVLDR 6 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 97.596 0.095131 100490000.0 165960.0 213420.0 176940.0 191380.0 161120.0 184980.0 158250.0 151390.0 262560.0 190190.0 False True 165066.4897998896 220523.5556848854 201851.6140099498 215608.68837736626 181637.6769669407 172192.76799608214 150594.84292629352 162687.49054284324 197855.6061237482 178051.9113701487 0.9270694626621335 1.2385351776788467 1.13366721231273 1.2109316138097586 1.0201388773038083 0.967093061068656 0.845791779304322 0.9137081949355508 1.1112242749948917 1.0 17.441938397413463 3.0268514568806903 4.271582310710803 0.9508556629918788 1.1357345523840134 0.35293320547386386 0.10050505148012844 0.1973645119344947 8.355429445155062 0.029785040425116153 0.03489158600962293 1063.7791082503188 -3.0268514568806903 0.1848788893921346 FAVLHGEAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 FAVLHGEAPR 10 0 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;; 140.16 3.9776e-05 2339350000.0 1223370.0 1524220.0 1537350.0 1336520.0 1158490.0 1272870.0 1472960.0 1121990.0 1862940.0 1342040.0 False True 1216783.5118491857 1574952.7412895528 1753795.5171142544 1505723.2949635158 1306016.834591801 1184879.4929136834 1401707.2975463707 1205718.591149777 1403843.3991170623 1256389.85822175 0.968476069658329 1.2535541663148138 1.395900727499118 1.1984522838274607 1.039499663297419 0.9430826627259792 1.1156626968720504 0.9596691530575617 1.1173628869497665 1.0 20.260852771810452 3.2485724040893342 4.917340912327293 1.0235260177159113 1.2236036123590364 0.3682191434944121 0.1114610075899196 0.181845663443286 11.668836271205592 0.03184516169291083 0.04137722647410559 1772.4435162200164 -3.2485724040893342 0.20007759464312502 FAVQDVNDVLDLEWDQHLEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 FAVQDVNDVLDLEWDQHLEQK 21 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 ; 263.02 9.9835e-37 340830000.0 268160.0 277020.0 217594.0 227210.0 243510.0 296630.0 283290.0 241940.0 375910.0 295110.0 False True 266716.2563553771 286240.44323787343 248229.34383904721 255974.7627036341 274519.5551031515 276124.6662919121 269586.1804271073 259994.79134642665 283272.0174359321 276275.827143618 0.9653984538311724 1.0360676364533168 0.8984837595292358 0.9265188538212911 0.9936430484757772 0.9994528625494717 0.9757863480649968 0.9410696333243519 1.0253232082033628 1.0 18.07574981296926 3.195844015072861 24.998434213667842 0.9828014458768156 0.9581395922721946 0.13285008150943467 0.03869576708085383 388.25227899436334 227210.1754607737 0.011790654637751911 0.01409262468272124 1569.7988806518315 -3.195844015072861 -0.02466185360462103 FCADHPFLFFIQHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 FCADHPFLFFIQHSK 15 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237 A0A2R8YD12 SERPINB6 Serpin B6 0 197.14 4.9585e-09 242950000.0 477180.0 657370.0 726470.0 597720.0 400910.0 510620.0 702790.0 413080.0 1240500.0 632600.0 False True 474610.91589968186 679250.1630614438 828750.6614095627 673391.2907143882 451963.51212025876 475322.0412701895 668793.3627814843 443906.12717773794 934795.3968483778 592226.9264038916 0.8014004340896903 1.1469423843761595 1.399380245072418 1.1370494327290068 0.7631593430995488 0.8026011990985118 1.12928563860228 0.7495541107413264 1.578441227798647 1.0 19.17579056053864 3.421888645139603 24.999851265976552 0.9724892382453312 1.1438807855543347 0.034793269753233824 0.26409902069477426 223.36152254159907 101098.70477502295 0.07173629866476436 0.09713141835562812 2641.731319889616 -3.421888645139603 0.17139154730900352 FCDS(ph)PTSDLEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 FCDS(0.681)PT(0.277)S(0.042)DLEMR;FCDS(0.492)PT(0.492)S(0.016)DLEMR 255.9 3.9347e-21 1624740000.0 1002360.0 1241370.0 1028930.0 1161560.0 1048060.0 1163950.0 1166180.0 949410.0 1164100.0 1086760.0 True False 996963.4051326656 1282688.2500259874 1173794.4003801143 1308613.3769025693 1181524.2286616918 1083488.8761435822 1109767.4181597778 1020259.7952062938 877223.153140826 1017402.0463779534 0.9799109493458843 1.2607486436581072 1.1537173574192547 1.2862303369266412 1.1613149716653595 1.0649564545313273 1.0907855179873618 1.0028088687638426 0.8622187819100843 1.0 19.956458470442303 1.9793508779042692 1.187512720171394 0.9366294670033315 1.174759119627995 0.5144071698117398 0.08731496032808711 0.3583956956530087 0.9335620357352362 0.06396192017912755 0.029286743931501342 95.35662640882866 -1.9793508779042692 0.23812965262466346 FCFSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 FCFSNR 6 0 Q15363;E7EQ72;F5GX39 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 0 107.55 0.072514 491180000.0 844020.0 757350.0 716760.0 710220.0 589430.0 883270.0 922440.0 813130.0 1532600.0 945970.0 False True 839475.8900994365 782557.9369222575 817673.5778103964 800133.7791795034 664490.4166746766 822211.6238939324 877818.0531369993 873809.8895904775 1154911.2657878455 885597.3847143379 0.9479204710730051 0.8836497831062168 0.9233017078908253 0.9034960953928269 0.750330147924971 0.9284259846353866 0.9912157243103784 0.9866897810141313 1.304104196468894 1.0 19.756291436094187 1.620035472825326 2.0395031980808844 1.1442765854530406 0.8920013878175586 0.517962817754466 0.09240330168848836 0.21548958680186533 1.9110676150189276 0.06691906880133193 0.02481661568712491 41.69034344181904 -1.620035472825326 -0.252275197635482 FCFTPHTEEGCLSER ddPTM_BT-474_Trastuzumab_2h_R1 10 FCFTPHTEEGCLSER 15 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;;;;; 289.89 6.9731e-44 57135470000.0 7046266.0 8591111.0 7950545.0 8186417.0 7516594.0 8905423.0 8551425.0 7195211.0 8732670.0 8365544.0 False True 7008329.686769742 8877060.936198737 9069912.628624022 9222816.552827762 8473787.691556884 8289812.0691208625 8137759.903134153 7732154.1813611435 6580620.490282886 7831647.819817454 0.8948729370893873 1.1334857159608145 1.158110379487855 1.1776342303710403 1.0819929453562172 1.0585016410140475 1.0390865486241738 0.9872959508975176 0.8402600119008252 1.0 22.900884459390046 1.7859196995738182 1.6503419447750682 0.9221616805295698 1.0950206362343031 0.37669050461949327 0.08242326122594973 0.3553539834735544 1.8712072322964532 0.06022753768511125 0.024799068452323512 61.08290730449445 -1.7859196995738182 0.1728589557047333 FCIWTESAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 FCIWTESAFR 10 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ; 151.97 4.3857e-05 616490000.0 525000.0 629240.0 731470.0 498960.0 307745.0 476260.0 534980.0 378897.0 909480.0 493610.0 False True 522173.4583329835 650183.8730163879 834454.6179487838 562128.2848404784 346934.5016024774 443337.26719544956 509100.9735779369 407172.21813998086 685350.8404076279 462107.38719921815 1.1299829277731723 1.4069973582484379 1.8057590964003434 1.2164451389697013 0.7507659717478422 0.9593814759864969 1.101694081679892 0.8811203400313653 1.483098646315662 1.0 18.817868626894068 3.479871744425139 24.933330280028027 1.0129214752241595 1.4547849983168464 0.3893829457342386 0.23431614375732446 97.36499811704428 882622.4373236629 0.0634202814421353 0.08746169517839623 3019.0600018254836 -3.479871744425139 0.44186352309268684 FCLDNGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 FCLDNGAK 8 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;;; 126.52 0.0028279 906530000.0 1720520.0 1654030.0 1423200.0 1383820.0 1393780.0 1986150.0 1766380.0 1629830.0 2145330.0 1881810.0 False True 1711256.9114877419 1709083.3886677495 1623574.1893238411 1559011.4701137377 1571269.6214187113 1848852.1253942 1680933.4511731216 1751456.1907090454 1616642.1674491959 1761711.274701403 0.9713605947023227 0.9701268381548086 0.9215892596242963 0.8849415295806509 0.8918996228170418 1.049463752627437 0.9541480918648416 0.9941789076680027 0.9176544367198903 1.0 20.74854607094459 2.762938188935745 24.995947577125804 0.9812780705704142 0.9275784013682717 0.31069567572493306 0.040992968786073426 1034.3950394175515 1060631.944981191 0.012840470278702299 0.013614276530005532 579.34623496973 -2.762938188935745 -0.05369966920214242 FCLESER ddPTM_BT-474_Trastuzumab_2h_R1 2 FCLESER 7 0 Q9H074;Q9H074-3;Q9H074-2 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 0 ; 102.3 0.020083 345670000.0 540110.0 665860.0 698060.0 540840.0 475270.0 546930.0 608070.0 517240.0 783890.0 590550.0 False True 537202.1077718626 688022.7475791307 796340.7803537098 609310.2885464255 535792.8173540084 509122.0164347347 578655.3310470225 555839.075291501 590710.8130878477 552860.5934047081 0.9716773345403132 1.2444778227763476 1.4404006902527922 1.1021047544627491 0.969128246334957 0.920886788655679 1.0466568569907677 1.0053874013129611 1.068462502364375 1.0 19.076556217901445 3.483804728099025 17.381030931893978 1.004462502543237 1.2297214286395166 0.43007643268606854 0.1119467729703131 5.0128247353587785 13035.022508733326 0.030806984715377253 0.043718095556259044 3046.524872137104 -3.483804728099025 0.22525892609627962 FCLSS(ph)PTEALK ddPTM_BT-474_Trastuzumab_2h_R1 3 FCLSSPTEALK 11 0 E7EWD6;Q76L83;Q76L83-2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 FCLS(0.001)S(0.998)PT(0.001)EALK;FCLS(0.086)S(0.801)PT(0.112)EALK;FCLS(0.021)S(0.966)PT(0.013)EALK 186.27 4.3025e-06 358910000.0 1115690.0 1125990.0 1006170.0 1025460.0 942860.0 1059410.0 1033710.0 1035500.0 1358540.0 1047520.0 True False 1109683.2490048127 1163467.8964746713 1147829.9902135823 1155283.1308572183 1062927.632230945 986175.4802828942 983705.498144322 1112774.268162457 1023746.0205033417 980666.376773008 1.131560411662475 1.1864054116989227 1.1704592075346203 1.1780592852166567 1.0838830181255186 1.0056177142811957 1.0030990369847435 1.1347123695870605 1.043928949488502 1.0 19.903402888722404 3.1255597527161822 4.15722624777776 1.0497494411709667 1.1682619134165366 0.6965974277522045 0.03973484211893418 0.1416461564055263 4.419554985452973 0.0126438656874771 0.015413988113498875 1335.241287050243 -3.1255597527161822 0.11851247224556993 FCNTVHDIVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 FCNTVHDIVNR 11 0 G5E9W3;Q9UKF6 G5E9W3 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 0 131.17 0.00020886 221180000.0 109340.0 130100.0 115420.0 125570.0 118950.0 114850.0 128510.0 121250.0 144910.0 129390.0 False True 108751.32558881596 134430.29985288918 131670.1327513756 141467.14912501798 134097.57742811326 106910.68982781962 122293.4803441263 130298.29069502457 109198.87219451698 121132.21942364777 0.8977902502427462 1.10978153040136 1.0869951312530033 1.1678738307456487 1.107034759753889 0.8825949886537637 1.0095867220629149 1.0756699688570832 0.9014849452448724 1.0 16.88622312658954 2.7872293201248173 24.995253019281026 0.9895311561648893 1.081837631556863 0.25154799705576025 0.08356867956649021 601.5427292318728 308938.95676051377 0.025952898887167727 0.02752715788399055 612.6738159327509 -2.7872293201248173 0.09230647539197367 FCNVDDDELR ddPTM_BT-474_Trastuzumab_2h_R1 5 FCNVDDDELR 10 0 Q86VP6;Q86VP6-2;H0YH27;Q86VP6-3 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;;;; 306.78 5.453899999999999e-33 8181950000.0 4098430.0 4414300.0 4341860.0 4407280.0 4268220.0 4356170.0 4543930.0 3923170.0 4999770.0 4609880.0 False True 4076364.5082583777 4561227.306999297 4953156.147876342 4965241.196111404 4811752.517278022 4055038.2212211797 4324122.746401724 4215936.866853601 3767643.676985579 4315673.511683171 0.9445488629348472 1.056898139919847 1.1477133602593919 1.1505136296037588 1.1149482240146045 0.9396072734055502 1.0019578021126205 0.9768896686555256 0.8730140653100859 1.0 22.041154295852603 2.7375933633347316 24.998730820290785 0.9621981807365325 1.0888328789021073 0.4818909310387769 0.06440570326586541 79.81950061178406 2062920.678510412 0.021359195078625007 0.02123422012456968 546.5040230622026 -2.7375933633347316 0.12663469816557482 FCPSSFQSPTRPPLAS(ph)PTHYAPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 FCPSSFQSPTRPPLASPTHYAPSK 24 1 A0A494C0H7;A0A494C094;F8WDA1;A0A494C188;A0A494C155;A0A494C1K7;Q9UGJ0-3;Q9UGJ0;E9PGP6 A0A494C0H7 PRKAG2 5-AMP-activated protein kinase subunit gamma-2 1 FCPS(0.005)S(0.005)FQS(0.004)PT(0.019)RPPLAS(0.92)PT(0.046)HYAPSK 93.411 0.0048771 490960000.0 210830.0 202950.0 216550.0 197280.0 191360.0 276190.0 253690.0 209870.0 264410.0 272120.0 True False 209694.91470541529 209705.06806413422 247038.35771365775 222255.62777242612 215728.56172041822 257097.63538132748 241418.04551008757 225531.56509826623 199249.69841247855 254753.06862634706 0.8231300837164017 0.8231699394040042 0.9697169068294731 0.872435527355371 0.8468143794445628 1.00920329151528 0.9476551030840837 0.8852947927746426 0.7821287472094135 1.0 17.95873999890582 4.26925534447038 23.776326054132113 0.9100972925654301 0.823149679383928 0.22463714919012878 0.06729326599343642 181.46591890535086 140559.74874311074 0.016180821428255374 0.044297988792611376 18588.970767993487 -4.26925534447038 -0.08694761318150213 FCSNSGRLS(ph)GPAELR ddPTM_BT-474_Trastuzumab_2h_R1 3 FCSNSGRLSGPAELR 15 1 Q96PC5;Q96PC5-11;Q96PC5-10;Q96PC5-9;Q96PC5-13;Q96PC5-6;G3V599;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5-8;Q96PC5-5 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 FCSNSGRLS(1)GPAELR;FCSNSGRLS(1)GPAELR;FCSNSGRLS(1)GPAELR 149.53 2.0235e-06 2224000000.0 2180450.0 2275390.0 2125730.0 1906570.0 2190380.0 2370830.0 2124950.0 1558380.0 2825810.0 1929360.0 True False 2168710.699470768 2351124.9806476976 2425014.3068236113 2147941.5665149745 2469311.909600594 2206940.1024335166 2022158.0504027 1674674.2288932996 2129426.9894140367 1806226.5929917993 1.2006858430085214 1.3016777572482414 1.34258587279842 1.1891872120857023 1.3671108149894267 1.2218511846722304 1.1195483768474672 0.9271672974980404 1.1789367943514188 1.0 20.78454746107952 2.183284452642255 2.9083289543344137 1.0271082714322644 1.2797674127749419 0.6474196604210039 0.07927775223241136 0.14280029843552325 2.4577934217652664 0.03191399559103095 0.022198953599546548 152.50512993804963 -2.183284452642255 0.25265914134267753 FDALKDDDSGDHDQNEENSTQK ddPTM_BT-474_Trastuzumab_2h_R1 1 FDALKDDDSGDHDQNEENSTQK 22 1 B9A044;B8ZZ50;O60573-2;O60573;B4E1E4;B9A023;B8ZZL3 B9A044 EIF4E2 Eukaryotic translation initiation factor 4E type 2 0 139.28 1.2012e-07 245530000.0 260110.0 207610.0 174010.0 148870.0 164410.0 259280.0 242570.0 216850.0 345810.0 253740.0 False True 258709.59666093806 214520.17334710478 198509.0954779663 167716.9267360149 185346.6389655827 241356.58387946928 230835.96239261332 233032.44814198825 260589.759116596 237546.09596225648 1.089092184878695 0.9030675603323312 0.8356655775538708 0.7060394996458427 0.7802554624809843 1.0160410462726284 0.9717522885717754 0.9809988549717719 1.0970071221797764 1.0 17.857847970883842 2.7222032666528646 24.218250056612376 1.0059735448713898 0.8548407505390232 0.3693476985089671 0.09771950249732027 645.7125210517004 956022.5802179691 0.033867644219669486 0.03202798963055227 527.4766831924952 -2.7222032666528646 -0.1511327943323666 FDASFFGVHPK ddPTM_BT-474_Trastuzumab_2h_R1 3 FDASFFGVHPK 11 0 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 147.74 3.5156e-05 25702000000.0 9856384.0 9649667.0 9795841.0 8822297.0 9102291.0 11115193.0 11524176.0 9924000.0 13095393.0 11111209.0 False True 9803318.323691197 9970850.332748117 11175010.265823673 9939198.895629512 10261413.805344412 10346825.870259913 10966707.580252513 10664579.273050921 9868208.864426006 10402082.12883537 0.9424380813640805 0.9585437039675119 1.0743051369346226 0.9555009057347557 0.9864769070510397 0.9946879617089079 1.0542800416708842 1.025235057843649 0.9486763075125674 1.0 23.31036899799043 2.4630534606028567 24.866978073171474 1.0139856174656483 0.9860654332684254 0.05434478252395192 0.04194340278128581 585.3190120723083 1034632.7244857987 0.01470172021117628 0.012306448180241198 290.4380154649644 -2.4630534606028567 -0.027920184197222864 FDDAVVQSDMK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDDAVVQSDMK 11 0 P11142;E9PKE3;E9PNE6;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 169.58 3.8903e-05 251320000.0 708380.0 623500.0 552340.0 463170.0 454780.0 622460.0 633320.0 592850.0 916020.0 618120.0 False True 704566.1607884166 644252.820586291 630104.6709746551 521807.2745101106 512693.53730775416 579430.8053132308 602683.8920826555 637091.4774313013 690279.1450391373 578671.0524008435 1.2175590222895167 1.113331689762873 1.0888823077643492 0.9017338474858709 0.8859844209946985 1.0013129271098584 1.0414965282645214 1.1009561905474237 1.1928696660654512 1.0 19.14238395057833 4.428712223439665 2.019883129761141 1.022795197110794 1.2164700817457905 0.3406097910338808 0.08525874331636983 0.5411705117563868 3.6662471807033215 0.025004843238922284 0.15350174709899905 26835.656452286705 -4.428712223439665 0.1936748846349965 FDDDKVSIVTPEDILR ddPTM_BT-474_Trastuzumab_2h_R1 6 FDDDKVSIVTPEDILR 16 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ;;;;; 266.28 3.2389e-27 4617680000.0 5401390.0 4405560.0 3882620.0 3584900.0 3701750.0 5180760.0 5021100.0 4961190.0 7093740.0 5195270.0 False True 5372309.51639084 4552196.401382737 4429259.147661983 4038747.9724319223 4173145.920508771 4822626.255397255 4778210.210535302 5331419.190212355 5345582.82824604 4863703.420705572 1.1045717741587715 0.9359527108506043 0.9106762408262623 0.8303853304949309 0.8580181724779957 0.9915543441375465 0.9824221991402042 1.0961645332886956 1.0990766430142573 1.0 22.2136238280147 2.1009471400696107 2.025826740945042 1.07232408020548 0.9248682311026346 0.3564156078309706 0.07514235341874037 0.33638285127812445 2.667994052616499 0.04176133002949619 0.023945097508918912 126.16739612449331 -2.1009471400696107 -0.14745584910284548 FDDDVVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDDDVVSR 8 0 Q93009;A0A669KBL1;Q93009-3;H3BND8;F5H2X1 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ; 194.2 0.0003877 1625690000.0 2084850.0 2305100.0 2155700.0 2205800.0 2115820.0 2367100.0 2371800.0 2165100.0 2820800.0 2363200.0 False True 2073625.3992486114 2381823.8600376225 2459203.8223197022 2485054.05383423 2385257.135552335 2203467.948554042 2257066.9728441252 2326670.7561550336 2125651.636783475 2212378.5527626905 0.9372832676664614 1.0765896537296198 1.1115655678585343 1.123249929688135 1.0781415018572493 0.9959723871859445 1.0201992647350655 1.0516603287668025 0.960799242122956 1.0 21.077166830786037 2.745516682898499 24.55059782874496 1.0136301879740162 1.0717719423298477 0.23565924927622128 0.05211778504271228 694.5521342830903 2451338.522068153 0.01656926703121343 0.01721819654359267 556.5660136594807 -2.745516682898499 0.058141754355831576 FDDGAGGDNEVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDDGAGGDNEVQR 13 0 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 ; 190.53 1.0081e-05 952220000.0 645510.0 782410.0 740260.0 741530.0 732870.0 779180.0 718600.0 691510.0 823150.0 823940.0 False True 642034.6458829036 808452.0438731671 844482.1735447343 835407.6219692155 826196.650439186 725317.120592429 683838.5726814184 743113.98761663 620295.7121448951 771355.4437894769 0.8323460358673915 1.0480927442495822 1.0948028957908225 1.0830384729834357 1.071097192729059 0.9403150343104171 0.8865414488058709 0.9633872342507838 0.804163264989143 1.0 19.557036287657212 2.609081447525305 5.057471633191705 0.9151879805053962 1.0336952645788426 0.2880068310940872 0.08431920833871548 0.2844782220752911 10.531758098249028 0.027656779983223613 0.02592223943365887 406.5195606372948 -2.609081447525305 0.11850728407344646 FDDKPDYSYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDDKPDYSYLR 11 1 P48730-2;H7BYT1;P48730;H0Y645;B0QY35;B0QY34;A0A669KBC0;P49674 P48730-2;P49674 CSNK1D;CSNK1E Casein kinase I isoform delta;Casein kinase I isoform epsilon 0 ; 129.34 0.00022524 1142730000.0 1273280.0 1191130.0 1234620.0 1122200.0 1032060.0 1288380.0 1334840.0 1292700.0 1824950.0 1309380.0 False True 1266424.8019547067 1230776.0419967084 1408443.764490583 1264270.4049382408 1163486.7235011226 1199317.3231202976 1270268.6896160096 1389167.838197593 1375215.5255771417 1225814.2473833824 1.0331294522461387 1.0040477540736024 1.1489862901308585 1.031371929015303 0.9491541854605591 0.9783842255711703 1.0362652353955908 1.1332612923719108 1.121879214989278 1.0 20.225308947470175 1.8750660043936487 6.780392305778969 1.097678561135248 1.024465731456381 0.16514061797653878 0.0593729455574785 0.37631386622815777 19.050813417080004 0.02686898471110511 0.016496657911450753 75.0008187464999 -1.8750660043936487 -0.073212829678867 FDDMSS(ph)PGLELPSCELSR ddPTM_BT-474_Trastuzumab_2h_R1 4 FDDMSSPGLELPSCELSR 18 0 Q6IN85-2;Q6IN85;G3V5Z3;G3V231;H0YIY8;Q6IN85-5 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 FDDMS(0.032)S(0.968)PGLELPSCELSR;FDDMS(0.01)S(0.99)PGLELPSCELSR;FDDMS(0.049)S(0.951)PGLELPSCELSR;FDDMS(0.318)S(0.682)PGLELPSCELSR 265.37 5.0931000000000005e-31 245722000.0 345352.0 351522.0 322171.0 300480.0 317082.0 347459.0 335956.0 316629.0 347105.0 356574.0 True False 343492.6632042143 363222.19727046386 367529.87643946847 338520.7371910917 357460.5132077425 323439.97716050793 319704.52480344946 340257.4637894842 261565.62371870675 333817.14204163966 1.028984494634993 1.088087313458445 1.1009916213159106 1.0140903343689442 1.070827312886028 0.9689136249335053 0.957723509488228 1.0192929629331053 0.7835595922934346 1.0 18.348698515726515 2.491031726879247 0.9048523117662223 0.9302995676928263 1.0709350271072702 0.44491951701939736 0.06403885501227703 0.5545808670768446 0.9175451404068793 0.0421624166678111 0.030428239926334234 309.76455858534575 -2.491031726879247 0.1406354594144439 FDDPGLMLMGFKPLVLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDDPGLMLMGFKPLVLLK 18 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 87.287 0.0034529000000000005 182426000.0 251460.0 277730.0 241210.0 224310.0 233660.0 310810.0 293760.0 278020.0 376520.0 321390.0 False True 250106.1672998324 286974.07515866956 275170.2713650953 252707.6230009774 263415.215988675 289324.4362680418 279549.70652782306 298767.2641569541 283731.6911095129 300878.61504417774 0.8312527205135849 0.9537868788598798 0.9145557630431537 0.8398989172556266 0.8754866674389538 0.9615985377543715 0.9291112513489104 0.9929827153488004 0.9430104930117842 1.0 18.198822045162263 2.7320692566806155 23.295290340053484 0.9642351590780238 0.8862880209372331 0.538957138528356 0.03801228351637352 171.37268830530957 614996.0546421594 0.012186497841431346 0.011762746614010168 539.5966648109707 -2.7320692566806155 -0.07794713814079068 FDDTNPEKEEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDDTNPEKEEAK 12 1 P47897;A0A1B0GVU9;P47897-2;B4DDN1;A0A0U1RQT0;A0A0U1RR66 P47897 QARS Glutamine--tRNA ligase 0 ; 126.95 0.00025393 795330000.0 1301410.0 799600.0 689870.0 664360.0 683870.0 1124110.0 1044450.0 913890.0 1816800.0 994420.0 False True 1294403.3531602437 826214.2026315931 786997.6995424657 748467.9078816337 770956.7908849408 1046402.9215703099 993925.9633135383 982089.1124393885 1369073.983872738 930955.2642342058 1.390403387669768 0.8874907682177707 0.8453657547012658 0.8039783828896608 0.8281351644959244 1.1240098872324118 1.0676409506434572 1.0549262141476206 1.4706120008880599 1.0 19.828352317174556 1.4835490127342892 3.9941090547580878 1.244741078611499 0.9774263750069443 0.17840371185959458 0.19839235504745653 0.2900976655397582 9.478194237114327 0.1320229448517422 0.05085760011170149 30.447315868352977 -1.4835490127342892 -0.26731470360455467 FDDTNPEKEKEDFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 FDDTNPEKEKEDFEK 15 2 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ;; 134.85 1.8329e-05 798430000.0 1227560.0 772020.0 732500.0 701810.0 638110.0 1034950.0 1182110.0 1065920.0 2378710.0 1088590.0 False True 1220950.9533547366 797716.2190040554 835629.6329958646 790659.0740418005 719369.52612571 963406.3425102457 1124926.8232012691 1145464.3630320863 1792508.7935809784 1019115.2542112122 1.1980499244903795 0.7827536833618313 0.819955966258827 0.7758289072552101 0.7058765170603759 0.945336004469794 1.103826891563854 1.123979214616572 1.7588872172935603 1.0 19.958885787929262 1.8629231197128948 1.662247159824294 1.353967354247891 0.8518811859403825 0.4343648312083148 0.2200475229724866 0.31251881277644256 1.627788681510117 0.1461073139467855 0.06413925355445142 72.93283906326697 -1.8629231197128948 -0.5020861683075084 FDEAYIYMQR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDEAYIYMQR 10 0 Q6DKK2;K7ERR1;K7EKH7 Q6DKK2 TTC19 Tetratricopeptide repeat protein 19, mitochondrial 0 78.113 0.07206599999999999 105110000.0 109570.0 100010.0 100280.0 96799.0 94592.0 117320.0 125800.0 99634.0 151490.0 112430.0 False True 108980.08729437145 103338.77239267835 114398.5523506147 109053.74347497485 106637.7305092904 109209.94454157405 119714.57339733171 107069.1950112005 114157.31936199975 105254.62114383419 1.0353947989176293 0.9817979606944026 1.086874391902328 1.0360945893857623 1.013140604663487 1.0375786198720414 1.1373806878629822 1.017239849876868 1.0845824926394416 1.0 16.68352404981815 2.4543940246222307 24.999140494633604 1.0627723855600613 1.03076962300853 0.09494800994300456 0.04238179131150203 511.62829351060503 562769.2457444337 0.014033378592514238 0.011741953520416624 284.70429875898316 -2.4543940246222307 -0.03200276255153134 FDEDDDK ddPTM_BT-474_Trastuzumab_2h_R1 4 FDEDDDK 7 0 Q13136-2;A0A2R8Y7R9;Q13136 Q13136-2 PPFIA1 Liprin-alpha-1 0 ;;; 113.1 0.014436 12265700000.0 18323900.0 11322300.0 10333200.0 9383400.0 9465200.0 12148000.0 14070500.0 13871800.0 20712100.0 12866100.0 False True 18225246.158376675 11699155.911025118 11788024.742215509 10571337.47789831 10670537.115364254 11308237.353316087 13389856.160470232 14906984.15557313 15607880.48292082 12044974.482777603 1.513099607179399 0.9712893894256937 0.978667473232966 0.8776554481716538 0.8858912180031119 0.9388344798475968 1.1116550043020512 1.237610272806119 1.2958002115519303 1.0 23.521928001448426 -0.7463830572638414 8.708301258630625 0.999998710123445 1.0790376530758063 0.016036800596052503 0.1951425332996538 0.0 0.0 0.19512617864889967 0.04599168136988491 0.17931513303000754 0.7463830572638414 0.07903894295236136 FDEFDEAIDEAIEDDIKEADGGGVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDEFDEAIDEAIEDDIKEADGGGVGR 26 1 Q96T23-2;Q96T23;Q96T23-3;H0YDG9 Q96T23-2 RSF1 Remodeling and spacing factor 1 0 ; 175.47 1.3073e-12 29120000.0 37980.0 30733.0 32496.0 31295.0 26713.0 40821.0 43145.0 36686.0 63317.0 41001.0 False True 37775.51989997468 31755.929326509173 37071.154339704546 35256.94379125136 30114.742209644275 37999.14035229795 41057.911520094356 39423.69560773339 47713.37375433189 38384.28107727786 0.9841403522426906 0.827315985483119 0.96578998744487 0.9185255735354185 0.7845592353029933 0.989966186309325 1.069654305558928 1.0270791715067662 1.2430446113676603 1.0 15.228228006781507 2.427240570400218 3.7035235914299744 1.079545715251832 0.8961639876108464 0.540165798080696 0.08178017351798941 0.17587899001460683 5.037299658178373 0.028450604418638774 0.023882536653172283 267.4487487479033 -2.427240570400218 -0.1833817276409856 FDEHDGPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDEHDGPVR 9 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1;A0A3B3ITX2;A0A3B3IS23 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 109.66 0.0024125 486350000.0 896190.0 1264300.0 1248100.0 1542300.0 1348800.0 1091300.0 1020100.0 879540.0 879340.0 986920.0 False True 891365.0126160698 1306381.4612145107 1423821.6313203236 1737555.0218644196 1520561.6850360562 1015860.9996438777 970753.8658395706 945175.7410136233 662638.4395523189 923933.9206552779 0.9647497431243682 1.413933866924153 1.5410427082388234 1.8806052933223845 1.6457472239547546 1.099495296074207 1.0506745603095584 1.022990627233688 0.7171924579653473 1.0 19.817430148857454 2.5878430567553803 4.0605003122482355 0.9707635615844469 1.5079938661693129 0.5516214046410656 0.23242833056379614 0.19361799541146896 5.511009714514614 0.08389067221282716 0.07786588197046908 387.11772490554995 -2.5878430567553803 0.537230304584866 FDEILEASDGIMVAR ddPTM_BT-474_Trastuzumab_2h_R1 8 FDEILEASDGIMVAR 15 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;; 234.61 2.7213000000000005e-17 1075616000.0 1486282.0 1489966.0 1360251.0 1264350.0 1290655.0 1652984.0 1596613.0 1441404.0 1649920.0 1541424.0 False True 1478280.0228534525 1539558.6176065323 1551762.5172863577 1424416.5803632743 1455012.2639384742 1538717.1067857938 1519378.7295360407 1548968.8857812055 1243319.3237953025 1443049.0006405204 1.0244142937608454 1.0668789603978621 1.0753359841540953 0.9870881582891671 1.0082902682394317 1.0662958126181505 1.0528947588485493 1.0734000613240928 0.8615918955235999 1.0 20.46068885860639 1.251666386355691 24.99999475747131 0.9307959227218013 1.045535204752838 0.5417591173620003 0.04175286632093029 139.49553415501225 266098.64205708326 0.027218309777267385 0.009809590798295499 17.85115768855684 -1.251666386355691 0.11473928203103656 FDEISFVNFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDEISFVNFAR 11 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 ; 142.0 8.808799999999999e-05 1286690000.0 595360.0 632210.0 626270.0 629480.0 492880.0 658560.0 737090.0 690510.0 805980.0 657750.0 False True 592154.6479107145 653252.7276709847 714443.3723635768 709172.1034579619 555645.3464713607 613035.2972834907 701434.1407427595 742039.3625387324 607357.0285786819 615771.8318718931 0.9616462092957639 1.060868155799126 1.160240425729983 1.151680000207447 0.9023559015069702 0.9955559276232502 1.1391137178367843 1.2050557107865698 0.9863345433199973 1.0 19.232036348074498 2.226978484828472 24.99178407036546 1.1124077194352469 1.0441901937087315 0.009628790784977803 0.09613659561061619 563.6589381349185 1216248.2442227942 0.037732019890544144 0.028101866927259404 168.6469474755855 -2.226978484828472 -0.0682175257265154 FDETEQALANER ddPTM_BT-474_Trastuzumab_2h_R1 1 FDETEQALANER 12 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 152.96 0.00068405 0.0 81379.0 110700.0 90047.0 93520.0 104050.0 114370.0 101400.0 104240.0 114880.0 114610.0 False True 80940.86450605688 114384.58258043676 102724.83489744515 105359.62241117828 117300.15074733217 106463.87109802119 96494.89461438342 112018.91811999465 86569.36331313304 107295.4916774423 0.7543733966883327 1.0660707248008712 0.9574012224694611 0.9819575898670212 1.0932439836332213 0.9922492495591411 0.8993378296310134 1.0440225993534955 0.8068313212393182 1.0 16.71122993290553 4.751592540671391 24.247270807963755 0.9855076116918515 0.754373168488479 0.42981764374013276 0.07869564913823665 1285.4103589970616 2391576.406398498 0.017646511546222866 0.32334964850426606 56440.71939813161 -4.751592540671391 -0.2311344432033725 FDEVLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDEVLIR 7 0 O00159-3;F5H6E2;O00159-2;O00159 O00159-3 MYO1C Unconventional myosin-Ic 0 ; 124.34 0.0096679 77705000.0 186362.0 238070.0 210680.0 222730.0 220070.0 236780.0 231820.0 216740.0 279420.0 253900.0 False True 185358.6476987645 245994.01603364572 240341.9127366124 250927.5951629783 248094.61004291597 220411.95592016634 220605.98096160128 232914.2393834198 210560.68503617356 237695.88462527384 0.779814290815263 1.0349107071056525 1.011131989582024 1.055666552908832 1.0437480246409636 0.9272855365907764 0.9281018108890917 0.9798833486352013 0.8858406840662018 1.0 17.858757399668754 -0.02543868168299547 8.119978876446652 0.9999999963200485 0.9681597984662348 0.013435566231348672 0.0808310343720653 10321291.300193412 1271098.2966647646 0.0758664409383529 0.01840031466635518 0.9431077600507519 0.02543868168299547 -0.031840197853813756 FDFDSDEDFNAFFNSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 FDFDSDEDFNAFFNSSR 17 0 Q9HAV4 Q9HAV4 XPO5 Exportin-5 0 ;; 344.47 5.9991e-73 379806000.0 359393.0 399818.0 371616.0 389487.0 401693.0 420383.0 400121.0 383653.0 450353.0 425162.0 False True 357458.068020316 413125.7004349153 423936.30265582324 438796.01426499774 452846.2225290551 391322.9126851391 380765.61861934577 412283.1350104601 339369.5375710253 398027.7971604991 0.8980731259736016 1.0379317811020325 1.065092201298888 1.1024255526758082 1.1377251180938281 0.9831547331035869 0.9566307211096802 1.0358149303934487 0.8526277310078907 1.0 18.602509662555573 2.5087419139936293 24.406329675077043 0.9714286234994176 1.0525036505948195 0.24126134617000372 0.0729856443469565 769.6438697311575 594046.9221256376 0.024056656792581576 0.022657286863590503 322.657611064238 -2.5087419139936293 0.08107502709540193 FDFLCQYHKPASK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDFLCQYHKPASK 13 1 J3KQ32;Q9NTK5;Q9NTK5-3;C9JTK6 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 169.3 1.7272e-05 6509700000.0 10228600.0 9675600.0 9182700.0 8574200.0 8460400.0 11408700.0 10841100.0 10550800.0 15106600.0 11608200.0 False True 10173530.354104297 9997646.496976279 10475544.342540788 9659692.84086746 9537781.791280445 10620043.422191067 10316674.575976245 11338154.271876834 11383780.848069092 10867354.737719966 0.9361551729596675 0.9199705667355295 0.9639461115758716 0.8888725061434886 0.8776544082227619 0.977242730959127 0.9493271200734488 1.043322367357969 1.0475208661917184 1.0 23.373497475670952 1.995143219129505 1.7592529521106623 1.035432043195053 0.9217288036843656 0.6865080673836391 0.030991835479073235 0.19512431042237458 1.1263088072035685 0.019231514324795827 0.009564579833280849 98.88791477541434 -1.995143219129505 -0.11370323951068739 FDHIFYTGNTAVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FDHIFYTGNTAVGK 14 0 I3L1M4;A0A5F9ZHZ9;J3QRD1;A0A5F9ZI12;A0A5F9ZHI5;A0A5F9ZGX4;A0A5F9ZHN9;P51648;P51648-2 I3L1M4 ALDH3A2 Fatty aldehyde dehydrogenase 0 90.367 0.0057806 146560000.0 290750.0 331870.0 331990.0 311180.0 310340.0 401550.0 326690.0 295760.0 424870.0 358170.0 False True 289184.6343053617 342916.09233034874 378731.30629118974 350575.3560939956 349859.95947070734 373791.7936470258 310886.75662300666 317831.11303884874 320166.4814663204 335311.2839552355 0.8624363334696731 1.0226798462771938 1.1294916825457948 1.045522095047651 1.0433885652276889 1.1147605569305192 0.927158647796984 0.9478688259154429 0.9548336032409307 1.0 18.355141508216704 2.216759539215255 24.99990967228436 0.9516310252202562 1.0407236311475732 0.2326786360911154 0.06961765973894325 326.7313157435219 374669.71938099177 0.026508230097042753 0.019594480406149587 164.72500872210856 -2.216759539215255 0.08909260592731694 FDHSEIYTYIGSVVISVNPYR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDHSEIYTYIGSVVISVNPYR 21 0 E9PDF6;O43795;O43795-2;E7EQD9;C9JUP5;C9JYW1;C9K0I9 E9PDF6 MYO1B Unconventional myosin-Ib 0 102.37 0.00046342 11800000.0 24245.0 24221.0 24148.0 23829.0 24785.0 30343.0 23002.0 19660.0 30104.0 23898.0 False True 24114.46761387272 25027.181343096312 27547.82850182131 26845.748956757572 27941.22283779558 28245.459829739026 21889.305383826886 21127.129031457167 22685.272572933143 22372.809179892825 1.0778471053847445 1.118642774890739 1.231308428026081 1.19992749863905 1.2488920194656319 1.2624905349447195 0.9783887757599756 0.9443216925322372 1.0139662118658366 1.0 14.449458795331864 2.2262352963298997 24.993576822697754 0.9757162596788649 1.1916407138832914 0.7640367275714984 0.05591317004333009 109.75608528387993 222564.41947226276 0.02269595794969158 0.016883440877104448 168.35859637574228 -2.2262352963298997 0.21592445420442652 FDIYDPFHPTDEAYS(ph)PPPAPEQK ddPTM_BT-474_Trastuzumab_2h_R1 9 FDIYDPFHPTDEAYSPPPAPEQK 23 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK 280.92 3.8292e-52 16976828000.0 14564040.0 12435860.0 11942535.0 11371935.0 11205764.0 14910620.0 14818580.0 13787360.0 19626460.0 15267910.0 True False 14485628.826856954 12849780.08246387 13623940.121624915 12811620.80500925 12632751.623633135 13879883.935224036 14101748.672927108 14816242.81399549 14789781.914090121 14293498.912284601 1.0134417692792648 0.8989947220984554 0.9531564108432379 0.8963250274569409 0.8838110039506051 0.9710627202199538 0.986584793511077 1.0365721440858413 1.0347208898850502 1.0 23.768855781871064 2.2345579799215516 2.1582673053746313 1.02502792107129 0.9275880696853012 0.5460908706433918 0.03677952303149668 0.21769873650624255 2.0571109050897034 0.016753795369081333 0.011204229323296334 171.61608086509005 -2.2345579799215516 -0.09743985138598887 FDKDHDVMLFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDKDHDVMLFLK 12 1 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ; 131.06 0.00012343 1121120000.0 3971900.0 3636700.0 3664100.0 3099700.0 2981300.0 4255000.0 4317800.0 3700700.0 6393000.0 4255200.0 False True 3950515.731719573 3757745.361068427 4179973.431071872 3492121.7021806026 3360950.883450472 3960861.8651926164 4108931.518402215 3976865.0257738326 4817530.81181111 3983629.492939999 0.9916875398981979 0.9432969024172816 1.0492877006960222 0.8766180962284589 0.8436906317233891 0.9942847024835687 1.031454236817024 0.9983019336566931 1.2093320476587985 1.0 21.925652041641094 1.8509248200356965 1.509907049177635 1.0873516266714927 0.9463514397540913 0.34827267978885523 0.07651413580207733 0.44274697595694523 1.900606962920598 0.05620115447092153 0.023941042434028687 70.94549448181826 -1.8509248200356965 -0.14100018691740135 FDKEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 5 FDKEEEIR 8 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ;;;; 114.5 0.0024122 2283830000.0 4377540.0 3896180.0 3681540.0 3365510.0 3731160.0 4911170.0 4410420.0 4393350.0 6372290.0 4870950.0 False True 4353971.811030414 4025861.9960094565 4199868.831480675 3791583.2209264827 4206301.109682039 4571672.377550654 4197071.1351594515 4721204.08597927 4801924.5138113275 4560081.800769893 0.954801251656345 0.8828486355945977 0.921007344818156 0.831472632856353 0.9224179068392755 1.0025417475578626 0.9203938259289223 1.035333200641746 1.053034731306926 1.0 22.120628273649842 2.2322494265990915 1.0566232401771185 1.0310463604115696 0.8988966444224035 0.5775308859637043 0.04319317027140044 0.35917917110299014 0.7659257194934112 0.03029732291904063 0.017004321445973736 170.70625178539348 -2.2322494265990915 -0.13214971598916614 FDKEEEIRK ddPTM_BT-474_Trastuzumab_2h_R1 1 FDKEEEIRK 9 2 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 81.865 0.01129 90974000.0 224200.0 186200.0 194980.0 166620.0 185880.0 275530.0 234990.0 203100.0 346070.0 238490.0 False True 222992.93211096167 192397.55443972326 222431.48920345862 187714.0749160667 209550.71620292275 256483.25962785468 223622.635951025 218256.35332090274 260785.68560041732 223269.36401843835 0.9987618905590028 0.8617284117127435 0.996247246823749 0.8407515994920136 0.9385556192367589 1.148761545299486 1.0015822678321307 0.977547252308554 1.1680316587406085 1.0 17.768425779287835 2.930716116653684 11.298974063783065 1.046152842086043 0.9206220016300911 0.4337235623119745 0.0747524781329 0.8604408000566253 138.67156909912072 0.022060999450081182 0.023412310895795336 852.5426540686841 -2.930716116653684 -0.12553084045595198 FDLDGDAPDEIATYMVEHDFILQAER ddPTM_BT-474_Trastuzumab_2h_R1 1 FDLDGDAPDEIATYMVEHDFILQAER 26 0 Q9Y3S1;Q9Y3S1-4;Q9Y3S1-2;H0Y7T5;F8W9F9;H0Y7R3;H0Y493 Q9Y3S1 WNK2 Serine/threonine-protein kinase WNK2 0 169.42 8.205e-12 26263000.0 46826.0 56556.0 50064.0 50233.0 56903.0 55206.0 52579.0 47863.0 61204.0 52247.0 False True 46573.89401885767 58438.432271176076 57112.57603591115 56592.492649494496 64149.25975949495 51389.73916094561 50035.55289871463 51434.78010338934 46121.09429158247 48912.55172909288 0.9521869616783009 1.1947532934867773 1.1676466268256651 1.157013704027092 1.3115091626131494 1.050645229992761 1.0229593658462477 1.0515660762960413 0.94292962974062 1.0 15.57791711044636 2.498459096498697 24.063554656122356 1.0166477604312294 1.161544878735434 0.4117498925060936 0.0862851212114569 476.79730116173664 537703.6904786275 0.027584521175337644 0.025747662852661536 315.10775857910903 -2.498459096498697 0.1448971183042047 FDLGQDVIDFTGHALALYR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDLGQDVIDFTGHALALYR 19 0 P50395;P50395-2;Q5SX87;Q5SX91;P31150 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 ; 262.21 3.3994999999999996e-31 4508000000.0 1468080.0 1427280.0 1632650.0 1532070.0 1535760.0 1674680.0 1626740.0 1543050.0 1775380.0 1668060.0 False True 1460176.0203990224 1474786.151991021 1862512.9287518035 1726029.9049133256 1731329.9328373205 1558913.3133726849 1548048.3714497236 1658200.2264491366 1337861.3878731728 1561602.9827019838 0.9350494565990992 0.9444053119309833 1.1926929887961448 1.1052936783758187 1.1086876446929324 0.9982776228278938 0.9913200657257921 1.061857747978948 0.8567231253351737 1.0 20.57459628292499 2.610989490676701 7.720829202936284 0.9918917249668004 1.0610531919810449 0.15590799820540358 0.08618448078967153 0.6246688028696475 36.393116343021866 0.029540544066452765 0.027810453129628876 408.3095056901803 -2.610989490676701 0.06916146701424442 FDLLWLIQDRPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDLLWLIQDRPDR 13 1 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 ; 211.77 1.7521e-08 2385170000.0 1102020.0 1226240.0 1158470.0 1137200.0 1085710.0 1344810.0 1325420.0 1098630.0 1403310.0 1265970.0 False True 1096086.8467659312 1267054.6571222658 1321572.506398251 1281169.4034002558 1223968.7329926572 1251846.4500422298 1261304.371003906 1180615.349330101 1057483.0538906069 1185174.7107485533 0.9248314504396112 1.0690868153286845 1.1150866571929714 1.0809962377539026 1.0327327455541147 1.0562547771978419 1.0642349685366383 0.996153004804184 0.8922592123339379 1.0 20.176668316845607 1.5310437183690482 4.032989161638569 0.9447224540728715 1.0527711218442106 0.377978253386523 0.052817161191067954 0.1717667147210984 6.145946767552514 0.032824931716205694 0.013508940486303425 33.96594627792803 -1.5310437183690482 0.10804866777133915 FDLLWLIQDRPDRDNDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDLLWLIQDRPDRDNDLR 18 2 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 ; 139.11 3.3371000000000004e-07 318810000.0 449570.0 547190.0 485260.0 529250.0 506770.0 612770.0 609360.0 485510.0 814450.0 632970.0 False True 447149.5650719222 565402.88836666 553580.3900444675 596252.9957347753 571304.1556388807 570410.6522054236 579882.9288187436 521741.22156982566 613739.7105708676 592573.3126871191 0.754589441505981 0.9541484171852923 0.9341973021602477 1.0062096671734508 0.9641071297122882 0.9625992936111223 0.9785842804650973 0.8804669572510886 1.035719458555712 1.0 19.176634128544105 4.742289160811069 4.845056392424484 0.9619742819192917 0.7428129204386293 0.7117123611803317 0.04067282605888942 0.09879764230135252 6.777633523397637 0.009630894674128535 0.07315763841111017 55244.514442975094 -4.742289160811069 -0.21916136148066234 FDLQVEHPYQFLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDLQVEHPYQFLLK 14 0 O75909;G3V5E1;O75909-1;O75909-4;G3V2Q3;O75909-2 O75909 CCNK Cyclin-K 0 ; 153.24 6.4465e-06 638350000.0 1056590.0 909470.0 809330.0 822760.0 717390.0 963300.0 840320.0 788240.0 1347170.0 1010390.0 False True 1050901.4368381843 939741.159163775 923276.6291775315 926921.3316405166 808745.3641963358 896709.3383642893 799670.5112658633 847062.4714016168 1015178.0046531477 945906.0451615995 1.1109998104078584 0.993482559891272 0.9760764654166028 0.979929599120133 0.8549954494245451 0.9479898589833988 0.845401628794165 0.8955038142894032 1.0732334462242639 1.0 19.85133736528366 5.170215422632179 0.8947358912198285 0.9266345534723672 1.3642386016345134 0.35803490162346485 0.06551464795410078 4.200817629808675 1.546949900963711 0.020777753845783287 2.151485602120379 147984.2250729914 -5.170215422632179 0.43760404816214615 FDLSQNHPLGMAIFLK ddPTM_BT-474_Trastuzumab_2h_R1 3 FDLSQNHPLGMAIFLK 16 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 195.6 4.804800000000001e-11 5347880000.0 2834248.0 3124422.0 3271909.0 2833119.0 2508685.0 3223880.0 3562992.0 2932556.0 4281270.0 3410600.0 False True 2818988.7236825577 3228416.497517013 3732565.34725715 3191791.574913763 2828151.1646090457 3001020.7637972184 3390636.4650087887 3151398.2199376347 3226208.3745788382 3192932.5880384385 0.8828838836883771 1.0111132660963487 1.1690085037311206 0.9996426441544836 0.8857534841806685 0.9398948086282273 1.0619192142392861 0.9869917804539932 1.0104217003093205 1.0 21.606450663124978 -0.7076379882730114 4.43794786402999 1.0000000049533349 0.997462745411391 0.0 0.07935527065427903 3.5126166652811423e-09 1.0553275907510299e-09 0.07857576067421171 0.018520450488734144 0.19604781742868232 0.7076379882730114 -0.002537259541943837 FDNSYSLWR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDNSYSLWR 9 0 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 0 ; 129.63 0.0008933999999999998 413740000.0 1058090.0 675980.0 647740.0 448190.0 404950.0 601440.0 607310.0 453450.0 1013570.0 535100.0 False True 1052393.3610048504 698479.5856614613 738936.1617429907 504930.80804604443 456517.98217330367 559863.8684374732 577932.0951505048 487288.741572444 763789.2546421691 500949.45987784135 2.100797476179495 1.394311485697157 1.4750712814885227 1.0079476044732616 0.9113054683892213 1.1176054937238546 1.15367345698194 0.9727303462733974 1.5246832581243273 1.0 18.93430553362261 5.20110466196394 0.9688728726824214 1.0944340376953323 3.633026276102655 0.7226921816968872 0.18300996305105643 2.1541519918053917 0.8689409943392096 0.054569118211417196 7.0628501940583295 158892.96235014717 -5.20110466196394 2.5385922384073227 FDPETNSDDACTYHPGVPVFHDALK ddPTM_BT-474_Trastuzumab_2h_R1 1 FDPETNSDDACTYHPGVPVFHDALK 25 0 Q9UHD1-2;Q9UHD1;E9PPQ5;E9PIZ4;E9PSD5;E9PL00 Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 0 109.97 0.0017141 137110000.0 138850.0 139520.0 124130.0 116710.0 112400.0 158480.0 133780.0 117840.0 207380.0 158480.0 False True 138102.44702768515 144163.83885837914 141606.42504269825 131485.47403345405 126713.47375300486 147524.65062179213 127308.55031077111 126633.81917939527 156273.9777496305 148365.67071844568 0.930824808454261 0.971679217707711 0.9544419834924315 0.8862257245678803 0.8540619480194289 0.9943314373697029 0.858072825703496 0.8535250679364295 1.0533028091531527 1.0 17.17879779002337 1.2292545588441675 24.999680945352797 1.0266514583730686 0.9105508170102491 0.4595020556813554 0.04929760202779064 199.67171278515914 536376.2797661438 0.04735689956869658 0.012490816764544535 16.95331216479894 -1.2292545588441675 -0.1161006413628195 FDPFGPIGT(ph)SPPGPNPDHLPPPGYDDMYL ddPTM_BT-474_Trastuzumab_2h_R1 4 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 0 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 FDPFGPIGT(0.532)S(0.468)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.559)S(0.441)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.525)S(0.475)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.541)S(0.459)PPGPNPDHLPPPGYDDMYL 209.65 3.2061999999999997e-25 1338392000.0 197927.0 243102.0 223066.0 231496.0 237036.0 247296.0 232202.0 232991.0 275283.0 246055.0 True False 196861.38302375685 251193.50311173758 254471.7538755703 260803.36986418033 267221.1295775552 230201.00959216748 220969.5021622194 250377.97152432552 207443.19325321398 230351.559241716 0.8546127652523648 1.090478848672135 1.1047103597355907 1.1321971108973923 1.160057828378538 0.9993464352920202 0.9592707029621116 1.086938470694679 0.9005504192638719 1.0 17.813477837964687 2.588706337561343 23.35616656410882 0.9996777871608257 1.0756502103251275 0.15786559982533432 0.08906059649796846 29.06254784965708 6043.028115311796 0.02905565566656308 0.02739392594608328 387.88799412301546 -2.588706337561343 0.07597242316430186 FDPFGPIGT(ph)SPPGPRPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDPFGPIGTSPPGPRPDR 18 1 Q5QPM7 Q5QPM7 PSMF1 1 FDPFGPIGT(0.548)S(0.452)PPGPRPDR 97.69 0.0021995 177830000.0 121200.0 140900.0 124960.0 119030.0 117010.0 136800.0 124330.0 113820.0 144830.0 141470.0 True False 120547.472666586 145589.77132415152 142553.28182820918 134099.18579557916 131910.52992739395 127343.33799256154 118315.6829132768 122313.826366249 109138.58712257193 132441.26348143953 0.9101957312833977 1.0992780308574648 1.076350965559814 1.012518170474657 0.9959926873234642 0.9615080273709983 0.8933445650030188 0.9235326147684344 0.8240527480158534 1.0 17.014993153571226 2.674786735515836 1.5499276102861554 0.9040989923464741 1.033468554318081 0.4041799373266699 0.06193948827486955 0.34210374060117343 1.653108181642247 0.025089980106588652 0.022934500964029273 472.9189705214627 -2.674786735515836 0.12936956197160698 FDPFGPIGTS(ph)PPGPNPDHLPPPGYDDMYL ddPTM_BT-474_Trastuzumab_2h_R1 5 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 0 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 FDPFGPIGT(0.238)S(0.762)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.229)S(0.771)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.236)S(0.764)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.045)S(0.955)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.037)S(0.963)PPGPNPDHLPPPGYDDMYL 239.34 1.4844e-45 1545532000.0 399904.0 450478.0 461240.0 502025.0 500993.0 501397.0 501834.0 481935.0 585809.0 518182.0 True False 397750.9612975109 465471.88791029836 526178.5828300512 565581.313526217 564791.4889318432 466736.60555158224 477558.3722279534 517899.43691634334 441444.22138843284 485111.1811220706 0.8199171175100645 0.9595158924880969 1.0846556486556154 1.1658797725874255 1.1642516415009663 0.9621229600851755 0.9844307672384557 1.067589157022588 0.9099856663113076 1.0 18.887955906419478 4.589934316944149 2.9287642236061875 1.048014046087143 0.8127455251343327 0.42486986331349863 0.07905924603447985 0.298087470150011 4.170378111970892 0.020596200026804058 0.1363333852124388 38898.63099347297 -4.589934316944149 -0.23526852095281026 FDPFGPIGTS(ph)PPGPRPDR ddPTM_BT-474_Trastuzumab_2h_R1 3 FDPFGPIGTSPPGPRPDR 18 1 Q5QPM7 Q5QPM7 PSMF1 1 FDPFGPIGT(0.246)S(0.754)PPGPRPDR;FDPFGPIGT(0.088)S(0.912)PPGPRPDR;FDPFGPIGT(0.158)S(0.842)PPGPRPDR 104.95 0.00029792 606920000.0 275925.0 305832.0 309628.0 277699.0 256395.0 314724.0 325495.0 290067.0 315623.0 288027.0 True False 274439.45045814966 316011.4332406522 353220.9310651785 312855.6649268804 289045.3834777725 292967.87066060683 309749.5633383504 311713.2724703811 237841.94078151975 269644.87026767933 1.0177810917957042 1.171954181538645 1.3099486399074913 1.1602507572879293 1.0719483860042807 1.0864952497326372 1.1487315261397657 1.156014101662457 0.8820562414015573 1.0 18.040701062671435 1.2468353671883987 24.98238876502468 0.9410281079710001 1.1445965038112809 0.5132566474747302 0.07757147038830223 126.49964673030148 381924.5422174608 0.05551930910851657 0.019515147174029312 17.653684760769117 -1.2468353671883987 0.20356839584028075 FDQLFDDES(ph)DPFEVLK ddPTM_BT-474_Trastuzumab_2h_R1 4 FDQLFDDESDPFEVLK 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 FDQLFDDES(1)DPFEVLK;FDQLFDDES(1)DPFEVLK;FDQLFDDES(1)DPFEVLK;FDQLFDDES(1)DPFEVLK 205.18 2.4406e-11 282998000.0 506433.0 415589.0 379447.0 362012.0 369928.0 495990.0 482754.0 485767.0 724952.0 516765.0 True False 503706.4209979955 429421.6286361446 432869.83938755176 407842.6820820734 417036.1380649603 461703.3787348738 459401.3447206311 522017.40021484473 546297.2934591097 483784.6152752244 1.0411790807184673 0.8876297738237238 0.8947573480427705 0.8430253240898375 0.8620285244658081 0.9543572990063179 0.9495989128535605 1.079028525778708 1.1292159283492758 1.0 18.88400536566649 1.8893502662297024 2.2607834606246042 1.0809216074017478 0.905608421725672 0.5695702870498396 0.060037092415566554 0.201091991662496 1.889601218150421 0.03544909303884386 0.017362869203212637 77.50866669773474 -1.8893502662297024 -0.1753131856760758 FDQLFDDESDPFEVLK ddPTM_BT-474_Trastuzumab_2h_R1 4 FDQLFDDESDPFEVLK 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;; 234.85 2.5480999999999997e-19 625846000.0 1616166.0 1551913.0 1443378.0 1332111.0 1384299.0 1863684.0 1866998.0 1733270.0 2407720.0 1804334.0 False True 1607464.7418289226 1603567.4860537807 1646593.0763335188 1500756.1160155816 1560581.272266999 1734851.911720242 1776684.1741150327 1862615.408766721 1814369.6677950618 1689179.8593519458 0.9516243832350848 0.9493171950729922 0.974788485203248 0.8884525278387744 0.9238692159553195 1.0270380043400578 1.051802840460493 1.1026744123513963 1.0741127759427258 1.0 20.68789151995023 2.5587658290842215 2.978303846925912 1.06831409558782 0.9376691489404839 0.7515681263552533 0.03265204632217553 0.12221917138539547 2.1163521660385713 0.011844542915869637 0.010686601546349206 362.04773019874057 -2.5587658290842215 -0.13064494664733617 FDREVDIGIPDATGR ddPTM_BT-474_Trastuzumab_2h_R1 4 FDREVDIGIPDATGR 15 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;; 223.76 1.1161e-12 1635690000.0 904111.0 1235440.0 1111063.0 1257900.0 1244160.0 1172700.0 1226428.0 1089514.0 1542400.0 1259990.0 False True 899243.3668321747 1276560.87356075 1267491.012867282 1417150.0110246057 1402596.4012859296 1091634.0092388664 1167100.9922300682 1170819.0671199928 1162296.1871011183 1179576.3594682892 0.7623443447421424 1.082219784513296 1.0745307013770786 1.2014059112403763 1.189067914109579 0.9254458183028829 0.9894238578638144 0.9925759004256037 0.9853505267137092 1.0 20.16983738328981 2.709025045061296 24.827557927629112 0.9802202198187164 1.0714924072349767 0.11498648424850777 0.11404101634981136 1409.4427134672067 1184774.0411952739 0.03796053314202194 0.03579432134258997 511.71134425614326 -2.709025045061296 0.09127218741626031 FDRPPAR ddPTM_BT-474_Trastuzumab_2h_R1 7 FDRPPAR 7 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ;;;;;; 120.49 0.0041458 3397470000.0 3073560.0 3522280.0 3289180.0 3146000.0 3285550.0 3524420.0 3392870.0 3302140.0 4114490.0 3395940.0 False True 3057012.294464617 3639516.9605367775 3752267.9539349307 3544283.2774333498 3703945.31751944 3280785.1409922806 3228743.9160779337 3548562.4547271593 3100529.0708413417 3179208.201789489 0.9615640437590431 1.1447872330249378 1.1802523508283862 1.1148320753067917 1.1650527686216305 1.03195038913954 1.015581148243315 1.1161780636857224 0.9752519728327761 1.0 21.600236068924797 2.7200624173012344 24.550115532458246 1.0405945265416883 1.1188520603969228 0.2838248459279258 0.06607847106629094 939.5001528977378 1246867.2091087366 0.02132189729915262 0.02013745822940696 524.8828916005169 -2.7200624173012344 0.07825753385523448 FDS(ph)NEEDSASVFSPSFGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDSNEEDSASVFSPSFGLK 19 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 FDS(0.786)NEEDS(0.214)ASVFSPSFGLK;FDS(0.675)NEEDS(0.325)ASVFSPSFGLK 191.21 6.5308e-15 252892000.0 197003.0 222442.0 194270.0 167919.0 179392.0 259420.0 236300.0 243980.0 295000.0 217650.0 True False 195942.35773709096 229845.84750097155 221621.5273748894 189177.52818287726 202236.5078603115 241486.90600899368 224869.266246339 262187.0265053371 222301.2027974777 203759.39066046017 0.9616359624062907 1.128025789417388 1.087662888353422 0.928435875125472 0.9925260730550262 1.1851571857681973 1.103601976416664 1.2867481869448627 1.0909985649098999 1.0 17.63650702480915 2.7369494177005342 24.939369817480134 1.1595439568576482 1.024388015864943 0.26664063899408597 0.08889517587250013 160.6942438448 2487329.816212264 0.028148163104550584 0.027888307308457733 545.694300348134 -2.7369494177005342 -0.13515594099270523 FDSEYER ddPTM_BT-474_Trastuzumab_2h_R1 4 FDSEYER 7 0 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;; 181.49 0.0015614 6664110000.0 4266770.0 4685070.0 4435500.0 4307320.0 4081890.0 4483460.0 4544110.0 4128810.0 5394420.0 4413360.0 False True 4243798.184402711 4841009.722765374 5059979.845942866 4852626.270360526 4601694.496242456 4173528.9631296135 4324294.03911406 4436922.767872367 4065037.4725246415 4131695.58633241 1.027132346933093 1.1716762819553708 1.2246739238682556 1.1744878510442405 1.1137544865272253 1.010124990073225 1.0466148700351408 1.0738745571066861 0.9838666444768408 1.0 21.97830253304628 2.918091828010552 3.8761000561519285 1.0336152563919294 1.1557671791601873 0.5611983637713791 0.052912866239557474 0.18627101855575015 5.236401191259442 0.016978340638119656 0.01850659510811247 828.1172438095022 -2.918091828010552 0.12215192276825793 FDSLTDLVEHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDSLTDLVEHYK 12 0 Q06124;Q06124-1;Q06124-3;A0A1W2PPU4;H0YF12 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 228.83 9.6265e-12 1210650000.0 2810100.0 2587500.0 2406400.0 2304600.0 2328500.0 3041300.0 2919600.0 2827100.0 3747100.0 2905200.0 False True 2794970.7338314615 2673623.373323219 2745200.2031962425 2596362.1237040404 2625020.6728992118 2831062.0894501307 2778367.7940449044 3038072.5577229187 2823677.4135675547 2719787.6487331428 1.0276429982073558 0.983026514797423 1.009343580361848 0.9546194258634151 0.9651564798163295 1.0409129149361418 1.0215384996468557 1.1170256468875541 1.038197748593646 1.0 21.37506258474134 2.435205847466091 2.31201959121891 1.061211507952004 0.9876998572184541 0.33261980153802595 0.0358198639007044 0.2681466878222774 2.9223017805417277 0.014195871668352653 0.011480783393778676 272.39921234891034 -2.435205847466091 -0.07351165073354982 FDSSLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 FDSSLDR 7 0 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;;;; 172.03 0.0021301 3489820000.0 2491870.0 2670130.0 2575380.0 2306150.0 2214800.0 2537020.0 2549260.0 2308740.0 3022330.0 2609370.0 False True 2478454.0487927822 2759003.6629223283 2937971.1183957537 2598108.353545112 2496841.6518519153 2361641.778902696 2425942.554681096 2481029.9023441747 2277517.268647121 2442837.7726059505 1.01457987779059 1.129425659723241 1.202687772123979 1.063561560526192 1.0221070264475054 0.9667616103640657 0.9930837740785255 1.01563432912595 0.9323244032769027 1.0 21.220126627596514 3.290927654537402 2.743060375551247 0.9876980432810473 1.1181607070493709 0.5860155220766559 0.04856853137883932 0.18409586584528362 2.8237941494840935 0.01451158538370676 0.019920547340618783 1954.0139259281088 -3.290927654537402 0.1304626637683236 FDSSLDRK ddPTM_BT-474_Trastuzumab_2h_R1 6 FDSSLDRK 8 1 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;;;;; 167.23 0.00050326 12613720000.0 10669370.0 10393820.0 9401830.0 9096290.0 8643580.0 10756300.0 11528360.0 10651870.0 16810630.0 11088070.0 False True 10611927.297398442 10739772.015503138 10725525.941828674 10247879.381336378 9744288.678487519 10012742.298606662 10970689.184188088 11446766.628499877 12667875.487401241 10380419.879625665 1.022302317291343 1.0346182659318817 1.0332458673353253 0.9872316823571431 0.9387181627992984 0.9645797005051147 1.056863721449359 1.102726745280044 1.2203625319882596 1.0 23.30736146494031 1.9005201377510623 2.8117333651500243 1.1202514589430628 0.9976083176988839 0.42296350088136403 0.057508163424111136 0.23806954285618212 3.361379793812168 0.03061665260378184 0.01606681221322679 79.52801409321717 -1.9005201377510623 -0.12264314124417885 FDSSLLS(ph)S(ph)DDETK ddPTM_BT-474_Trastuzumab_2h_R1 1 FDSSLLSSDDETK 13 0 R4GMW8;A0A1W2PS85;P28715;A0A494C0S2;A0A090HNM7 R4GMW8 BIVM-ERCC5;ERCC5;ERCC5-201 DNA repair protein complementing XP-G cells 2 FDS(0.001)S(0.001)LLS(0.885)S(0.903)DDET(0.21)K 75.669 0.019468 0.0 271000.0 222730.0 230030.0 203250.0 214590.0 269100.0 260150.0 263030.0 330390.0 247100.0 True False 269540.96611093037 230143.43340687148 262416.22454339726 228981.42916030812 241916.7645254206 250497.7503932628 247565.55063049114 282658.63423927675 248969.8114991822 231329.86644704672 1.1651801397318944 0.994871250053452 1.1343810834882684 0.9898481016618916 1.0457653749642282 1.0828595297296113 1.0701841246562986 1.2218856068201622 1.0762545075699224 1.0 17.819592015350032 1.9580781505025855 24.97602933248337 1.1295342278229368 1.0648593578178187 0.0 0.07365986814003152 912.1028190180783 543406.9643369033 0.02839089431236975 0.018328245093925173 90.79839055315207 -1.9580781505025855 -0.06467487000511807 FDSSLLSS(ph)DDETK ddPTM_BT-474_Trastuzumab_2h_R1 1 FDSSLLSSDDETK 13 0 R4GMW8;A0A1W2PS85;P28715;A0A494C0S2;A0A090HNM7 R4GMW8 BIVM-ERCC5;ERCC5;ERCC5-201 DNA repair protein complementing XP-G cells 1 FDSSLLS(0.195)S(0.805)DDETK 196.74 1.4622e-07 189890000.0 972820.0 822250.0 744280.0 705850.0 652490.0 956490.0 960250.0 922170.0 1271000.0 961660.0 True False 967582.4452104634 849618.0941893781 849068.1546022682 795210.5376275696 735580.7338887735 890370.0976352721 913799.0389887724 990987.0080843787 957779.0805274396 900286.0354814532 1.0747500317418803 0.9437201741500089 0.9431093243029203 0.8832865403741473 0.8170522532823705 0.9889857917868533 1.0150096780076043 1.100746839369135 1.0638608650807744 1.0 19.78002391633353 2.260475564456745 2.7664012665332267 1.0623078026219093 0.9299071064095604 0.38269827754287267 0.0661031392436114 0.2550741623530147 4.018223769289266 0.028302379866777173 0.020754907365343855 182.16945727132133 -2.260475564456745 -0.13240069621234885 FDTGNLCMVTGGANLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDTGNLCMVTGGANLGR 17 0 P62701 P62701 RPS4X 40S ribosomal protein S4, X isoform 0 103.14 0.003986099999999999 0.0 52516.0 51378.0 54884.0 50051.0 58444.0 56516.0 56787.0 49501.0 75314.0 65475.0 False True 52233.25969107611 53088.08567134313 62611.190139720085 56387.451468155356 65886.49697527241 52609.18194435393 54039.99586259353 53195.01598098483 56753.87385589573 61296.329444032264 0.8521433528702342 0.8660891468194059 1.0214508879669275 0.9199156291999662 1.074884867868496 0.8582762201509914 0.8816187910882288 0.8678336282689735 0.9258935138639238 1.0 15.903513064371843 FDTQYPYGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDTQYPYGEK 10 0 P30040;F8W1G0 P30040 ERP29 Endoplasmic reticulum resident protein 29 0 ; 175.15 6.7187e-06 890060000.0 655790.0 596890.0 566810.0 550770.0 519190.0 663540.0 708260.0 572050.0 872540.0 586480.0 False True 652259.2995051189 616757.1228223753 646611.921199161 620497.4255282789 585305.7690197739 617671.0416051496 673998.7579840554 614739.2758110415 657514.2084369881 549050.3442892107 1.187977216095767 1.1233161571382244 1.1776914957338775 1.130128469970385 1.066032969667834 1.124980701732869 1.2275718702200258 1.1196409986899658 1.1975481215446506 1.0 19.066578915336443 6.998658456885123 1.5323398329160032 1.1357084063182619 59.98873633058019 0.06356622827616432 0.0616495131144411 4926.969964093802 12.944237263314317 0.01485749955393796 1018873.8988228312 9969157.489268495 -6.998658456885123 58.85302792426192 FDTQYPYGEKQDEFKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDTQYPYGEKQDEFKR 16 2 P30040;F8W1G0 P30040 ERP29 Endoplasmic reticulum resident protein 29 0 107.98 0.00061081 200720000.0 117340.0 172730.0 157600.0 169730.0 154270.0 177980.0 194370.0 193520.0 372800.0 220540.0 False True 116708.25447769952 178479.21363250993 179788.71011624314 191217.8005971912 173915.37007007166 165676.66151985477 184967.58053449413 207961.44507464848 280928.4352640666 206464.94838620647 0.5652690947782039 0.8644528527847383 0.8707953166943202 0.9261513980547708 0.8423481633538655 0.8024444963410715 0.8958788500433493 1.0072481876470514 1.3606592182348125 1.0 17.655537350116926 1.58164395752274 2.858854379827505 1.182032149972548 0.8291270143207328 0.5660499544735558 0.12491637495665503 0.1537763437940081 2.8748239786790677 0.08184374137975622 0.03183955191214066 38.16312743310191 -1.58164395752274 -0.35290513565181514 FDVHDVTLHADAIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDVHDVTLHADAIHR 15 0 P13639 P13639 EEF2 Elongation factor 2 0 ; 176.56 2.7544e-07 354400000.0 455940.0 504750.0 480740.0 527050.0 576020.0 531050.0 515600.0 120917.0 789340.0 407400.0 False True 453485.269699696 521550.2986221821 548424.0133330129 593774.4759603456 649372.7326619732 494339.76345723565 490658.45821672666 129940.44054408476 594817.7336141057 381399.3832073123 1.1890036787322251 1.3674649765720512 1.4379258003018667 1.5568312433205884 1.7026056182922615 1.2961210353833577 1.2864689347177727 0.34069389271522427 1.5595665850638998 1.0 18.540942984987137 1.9792701924658664 22.27675144819733 0.8735180236394634 1.4290533603937616 0.29514016363402407 0.306738748875708 180.8308688662115 194324.10560831602 0.12157286914894623 0.07968006227800226 95.33891221519713 -1.9792701924658664 0.5555353367542982 FDVILLEPPLEEYYR ddPTM_BT-474_Trastuzumab_2h_R1 1 FDVILLEPPLEEYYR 15 0 Q9HCE5;D6RBL4 Q9HCE5 METTL14 N6-adenosine-methyltransferase subunit METTL14 0 94.767 0.010106 7871100.0 23506.0 23819.0 20506.0 19603.0 19529.0 23932.0 22597.0 19126.0 28739.0 19188.0 False True 23379.4463077621 24611.801016110436 23393.066558652798 22084.73779005913 22015.902392548298 22277.637169868332 21503.89678107711 20553.279239860123 21656.65853287023 17963.405412326716 1.3015041285946165 1.370107752465549 1.3022623506899298 1.2294293472274642 1.225597367937858 1.2401678110867072 1.1970946648190028 1.144174991772785 1.2055987178249152 1.0 14.132773254448011 3.540800872058683 0.032819458244616254 3.43800163134516e-10 2.5410170913446257 0.8809338421569108 0.03297539547109977 105.85999536695957 0.8551332002210035 28.268121723499398 38.11245143796504 3473.768495009575 -3.540800872058683 2.5410170910008256 FDVNTSAVQVLIEHIGNLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDVNTSAVQVLIEHIGNLDR 20 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 277.25 1.4187999999999999e-44 2531800000.0 1125020.0 1249960.0 1210350.0 1242160.0 1218960.0 1329360.0 1269570.0 1141240.0 1167790.0 1276210.0 False True 1118963.0173214723 1291564.1629832226 1380756.7594492072 1399417.3286384663 1374187.330658032 1237464.4721768398 1208156.0488716238 1226405.123899296 880003.8020842941 1194761.185181648 0.9365578922379776 1.0810228680025766 1.155675943087556 1.1712946034698164 1.1501774142830934 1.0357421110802987 1.0112113314829017 1.0264855764567182 0.7365520515721315 1.0 20.18829084327437 1.4611332963684835 3.6590574434650986 0.8675663463323884 1.0831595753177525 0.43671733006254887 0.09159555336112223 0.18685565587422287 4.801465511058559 0.06534060348179707 0.023771745546604682 28.915672440171743 -1.4611332963684835 0.21559322898536415 FDVPGDENAEMDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FDVPGDENAEMDAR 14 0 P46940;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 113.95 0.0026267 0.0 101090.0 124124.0 122572.0 104611.0 103432.0 121538.0 110889.0 102778.0 110457.0 125249.0 False True 100545.74267215493 128255.39230545759 139829.0721850773 117854.74187399253 116603.45211050512 113136.36412967822 105524.87543288305 110447.81625610923 83236.35239796946 117255.50158893634 0.8574927513818417 1.0938112972735698 1.1925160891407665 1.0051105515471415 0.9944390713476532 0.9648704120195688 0.8999567099446008 0.941941442059641 0.7098716160011995 1.0 16.839296089534557 2.55078158295888 1.1989594098357998 0.8789877021643732 1.0504186489952698 0.2912682750314165 0.10428800859960063 0.5665179866571549 1.6577658487178077 0.055538901791130496 0.04302189569384785 355.4525080744915 -2.55078158295888 0.17143094683089666 FDWFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FDWFLK 6 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 ; 106.76 0.074087 417340000.0 875910.0 984330.0 992150.0 868070.0 808850.0 1136310.0 979310.0 949850.0 1464960.0 1043210.0 False True 871194.1978827496 1017092.8290099499 1131836.096077606 977967.5729947786 911852.2530704446 1057759.5642860213 931937.0339725033 1020732.6302405706 1103940.237458283 976631.4446629855 0.8920398812096204 1.0414295326738396 1.158918343519216 1.001368098824889 0.9336707906073054 1.0830693298545506 0.9542361543500114 1.045156426017804 1.1303550008460244 1.0 19.89745470370139 1.4842983986419098 9.703954743017942 1.0726524264949593 1.0149504811081065 0.07692198291444996 0.07762812053109375 0.2324850754994613 77.02316495294423 0.041773252628717734 0.01928274734034241 30.49989882112791 -1.4842983986419098 -0.057701945386852804 FDYTNER ddPTM_BT-474_Trastuzumab_2h_R1 1 FDYTNER 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 81.119 0.092426 0.0 127500.0 165930.0 148080.0 161800.0 154580.0 162790.0 158300.0 145780.0 180340.0 158470.0 False True 126813.55416658161 171452.87974319665 168928.37686556642 182283.8634102723 174264.84673255766 151536.71046644088 150642.42423527496 156658.84385584062 135897.62343219377 148356.30892700708 0.8547904371830608 1.1556831049736709 1.1386666201616071 1.2286896642862553 1.1746372499621696 1.0214375887512717 1.015409626491804 1.0559634773127071 0.9160218693433313 1.0 17.178706753895188 2.635844516999887 6.519050463207158 1.009385609690371 1.1208968107630397 0.22734525806523942 0.09895150913303716 0.3813286742846298 20.760031201164665 0.03253065197827473 0.030616115958303474 432.3590132457987 -2.635844516999887 0.11151120107266865 FEAAETLEEAAMR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEAAETLEEAAMR 13 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;H0YG16;G5E9S8;H0YJU9;H0YJT3;H0YJL0 Q07866-6 KLC1 Kinesin light chain 1 0 ; 143.5 7.2063e-06 0.0 39565.0 43898.0 45615.0 42663.0 42562.0 42593.0 44267.0 41629.0 52465.0 52353.0 False True 39351.986436084764 45359.118393098615 52037.195507312375 48064.13142566409 47982.01841526146 39648.64616313726 42125.63609363812 44735.56736777875 39535.703744981976 49011.78671834169 0.8029086281271616 0.9254736754194652 1.0617281880857954 0.9806647470714844 0.9789893743519688 0.808961452292853 0.859500110365767 0.9127512046206908 0.8066570592944028 1.0 15.580841120516784 2.758903062288347 24.526613671553 0.8741520857200883 0.956508917958116 0.16897876581882376 0.0794127685762088 1062.1569238595846 1280626.1770109585 0.024399617598624784 0.025850682388730322 573.9883295054145 -2.758903062288347 0.0823568322380277 FEAFEHENK ddPTM_BT-474_Trastuzumab_2h_R1 4 FEAFEHENK 9 0 Q9UBQ0;F8VXU5;Q9UBQ0-2;Q05DG7 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 ;;; 179.81 4.9377e-05 4079740000.0 5761000.0 5013700.0 4284990.0 4001530.0 4113800.0 5760100.0 5077160.0 5314500.0 6969000.0 5439600.0 False True 5729983.416107272 5180577.973654353 4888279.346199244 4508123.287713886 4637668.045597071 5361917.844816924 4831558.37416531 5711094.976484194 5251583.329815672 5092440.070924144 1.1251940791258894 1.0173075974390826 0.9599090569782885 0.8852579951708258 0.9106966367805396 1.0529172204561412 0.9487707870636775 1.121484965349387 1.0312508849736246 1.0 22.27992566662839 1.7508312786237734 24.999999999972907 1.0614826753050575 0.9817786230268106 0.14228255647645283 0.07149967582951375 5.887048471961419 12013.744836357064 0.03430425740866321 0.01902355456065903 56.341872776025745 -1.7508312786237734 -0.07970405227824684 FEAWLAEVEGR ddPTM_BT-474_Trastuzumab_2h_R1 3 FEAWLAEVEGR 11 0 Q96RU3-5;Q96RU3-2;Q96RU3;H0Y7W6;Q96RU3-3;B7ZL14;Q96RU3-4 Q96RU3-5 FNBP1 Formin-binding protein 1 0 ;; 132.78 0.00040806 63502000.0 77778.0 80133.0 71873.0 69339.0 63752.0 78023.0 65696.0 66845.0 68770.0 68869.0 False True 77359.25188994822 82800.17846357865 81992.09366868496 78117.3102905122 71870.43931229148 72629.45365638618 62518.03349690857 71833.31333203224 51822.554970788326 64473.72145828272 1.1998570912337205 1.284246924030187 1.2717133711870097 1.2116147249396403 1.1147245371712373 1.1264969977478432 0.9696668981231436 1.1141487059733552 0.8037779392697186 1.0 15.97642363858241 2.6200783334847326 0.72375707922949 0.9545671446427182 1.26639619177796 0.7077485509781003 0.07660337895023447 0.3816655174943966 0.4191697106802784 0.055015552612231934 0.04845093945378666 416.9445807799755 -2.6200783334847326 0.31182904713524184 FEDEDS(ph)DDVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEDEDSDDVPR 11 0 P49756 P49756 RBM25 RNA-binding protein 25 1 FEDEDS(1)DDVPR;FEDEDS(1)DDVPR 216.83 1.2374e-11 868410000.0 888590.0 906720.0 755930.0 748540.0 790550.0 863570.0 794780.0 798200.0 922300.0 820070.0 True False 883805.93017163 936899.6270761857 862358.3733386518 843305.0872504651 891221.8565430416 803873.4385251207 756333.4550455573 857765.737177473 695011.5231868263 767732.4305027492 1.1511900436365181 1.2203465554563815 1.1232538044197728 1.0984361917578853 1.1608495631211326 1.0470750050231754 0.9851524111730864 1.117271725275127 0.905278317774981 1.0 19.55024406605139 2.7932488272118112 0.4994551006990741 0.9841415533508439 1.1950468558492475 0.6012234983751512 0.057149357747889235 0.777041733260585 0.4017139421791787 0.05024215176078418 0.06932288407530578 621.2248604782108 -2.7932488272118112 0.21090530249840367 FEDEDSDDVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEDEDSDDVPR 11 0 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 255.07 4.3555e-20 2555000000.0 1611010.0 1773200.0 1473690.0 1321120.0 1495240.0 1669060.0 1553070.0 1493930.0 1672990.0 1497330.0 False True 1602336.5011600363 1832219.8900779665 1681172.7424568916 1488373.6565425133 1685649.9510181735 1553681.810744628 1477942.0707964525 1605414.642622828 1260704.0314174653 1401769.1174712926 1.1430816110791164 1.3070767983412142 1.1993221433566936 1.061782313500707 1.2025161133946116 1.1083721216139908 1.0543405846053815 1.1452775086947982 0.8993663904450254 1.0 20.418817314885814 2.3187712915551564 0.42654832541069426 0.9749421134325282 1.233466786973903 0.5173326587928042 0.0759666211176764 0.9698212618136931 0.39111475124203027 0.07773692659857974 0.08843223245592255 208.33934361360326 -2.3187712915551564 0.25852467354137487 FEDENFHYK ddPTM_BT-474_Trastuzumab_2h_R1 3 FEDENFHYK 9 0 Q08752 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 0 ;; 98.249 0.006142 1146540000.0 1094750.0 1002340.0 771210.0 727350.0 763490.0 1020140.0 882750.0 896990.0 1241710.0 1100430.0 False True 1088855.9876381594 1035702.2809726743 879789.6645225119 819432.4354231235 860715.9259402279 949620.1229512562 840048.0100675226 963927.948622929 935707.2085615457 1030199.6152744789 1.0569368998920199 1.005341358719814 0.8539992167324845 0.7954113195866414 0.83548461208744 0.9217826418021389 0.8154225623970034 0.935671043097902 0.9082775752272463 1.0 19.97449247572719 4.344857184487702 4.392112173595423 0.8772247021611972 1.044730635934394 0.5065955578608223 0.0588804709707725 0.15232016452319316 5.0017922105622405 0.01430412203121735 0.042792500201101646 22123.6706441205 -4.344857184487702 0.16750593377319678 FEDENFILK ddPTM_BT-474_Trastuzumab_2h_R1 12 FEDENFILK 9 0 P62937;F8WE65;C9J5S7;P62937-2 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;;;;;;;;;;; 246.51 2.4612e-10 18401001000.0 10861841.0 9522483.0 8729945.0 6930881.0 7334222.0 9988797.0 9839727.0 9478511.0 11956601.0 9432194.0 False True 10803362.054919984 9839433.090192469 9959045.373957781 7808329.823960763 8268191.698360402 9298294.974488936 9363741.813602576 10185845.621723598 9010056.893794995 8830223.30361244 1.2234528712881285 1.1142904037508496 1.1278361861906188 0.8842732007429958 0.9363513712023441 1.0530079087224224 1.0604195943461445 1.1535207289216087 1.0203656899717342 1.0 23.07401849133617 4.329427176646985 2.010643633402013 1.0316426408664379 1.207275656975553 0.4164031192147727 0.07419649662010254 0.45229355555358924 3.2703526461503154 0.022300208808225624 0.10825133465131251 21351.440308774956 -4.329427176646985 0.17563301610911508 FEDLEVSTFER ddPTM_BT-474_Trastuzumab_2h_R1 2 FEDLEVSTFER 11 0 K7ERC8;Q06136 K7ERC8 KDSR 3-ketodihydrosphingosine reductase 0 ; 92.538 0.023079 114998000.0 77185.0 118597.0 120254.0 114066.0 132699.0 121497.0 97132.0 88151.0 94530.0 110402.0 False True 76769.44453605973 122544.42945159954 137184.7179334944 128506.74390454966 149597.43108140564 113098.19836317454 92433.3540797267 94729.27524170821 71234.34813710363 103356.04984009243 0.7427668206634616 1.1856531827715404 1.3273022541567725 1.2433403182819893 1.4473988829183746 1.0942581352340255 0.8943197250933564 0.9165334335848636 0.6892131447294477 1.0 16.65726331234241 2.3239328136210085 3.6495700197224883 0.8712271240033602 1.2051427695019632 0.38907879825269676 0.18521231618440367 0.2343024967811452 6.111097720955097 0.07003834015948993 0.05606787216783129 210.8301965424676 -2.3239328136210085 0.333915645498603 FEDRFDK ddPTM_BT-474_Trastuzumab_2h_R1 4 FEDRFDK 7 1 Q9HD45;Q5TB53 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 ;;; 116.25 0.0050141000000000005 3225390000.0 2938110.0 3776830.0 3937240.0 2853170.0 3407360.0 4233480.0 4409530.0 3376610.0 5898200.0 3883410.0 False True 2922291.5422147065 3902539.5034080567 4491569.168896429 3214381.029457888 3841267.098995004 3940829.492139986 4196224.187859586 3628589.784278161 4444667.641830792 3635567.449045427 0.8038061686854409 1.0734333933022553 1.2354520255361396 0.8841483687235323 1.0565797919671622 1.0839654462124502 1.1542143686431585 0.9980807219601721 1.222551280955551 1.0 21.79374913072667 3.005329604651771 24.97913275767309 1.0871752149481704 1.0150083516070663 0.10562440805129225 0.12333214213533987 423.5684559646661 1985181.7773554684 0.03524857328669023 0.04200573265661338 1012.3474765662161 -3.005329604651771 -0.07216686334110411 FEDYLNAESR ddPTM_BT-474_Trastuzumab_2h_R1 6 FEDYLNAESR 10 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1;A0A5F9ZGZ7 E7EPK1 SEPT7 Septin-7 0 ;;;;; 332.49 8.8294e-53 4700590000.0 3537390.0 3996090.0 3630520.0 3809730.0 3732220.0 3924940.0 3990160.0 3526730.0 4385570.0 3952470.0 False True 3518345.085280974 4129097.4399625836 4141665.6589544644 4292041.427379583 4207496.094398929 3653618.136114947 3797140.7169085587 3789912.500972074 3304805.037127235 3700219.9807201857 0.9508475451765404 1.1159059357219416 1.1193025497225597 1.1599422330950737 1.1370935015544699 0.9874056556507301 1.026193236265242 1.0242397805317593 0.8931374497588682 1.0 21.819179611865795 2.72910873791589 24.268579264966384 0.9940454178656399 1.1024681121345152 0.42761335715834614 0.06337358146527973 458.1960210609152 1176457.975389539 0.02068467417663967 0.019761882700910498 535.9308261675895 -2.72910873791589 0.1084226942688753 FEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 4 FEEAKR 6 1 P31948;P31948-2;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 159.42 0.014625 2087070000.0 2369160.0 2597470.0 2297370.0 2199260.0 2238910.0 2742350.0 2988710.0 2814610.0 4229210.0 3167130.0 False True 2356404.70579842 2683925.2187462295 2620819.7269019876 2477686.090504791 2524021.917440746 2552777.7992975246 2844134.6793190716 3024650.490499982 3186977.864010581 2965001.0518835913 0.7947399223691523 0.9052021135173624 0.883918649956986 0.8356442534584528 0.8512718455318246 0.8609702845386205 0.9592356392292892 1.0201178473709132 1.0748656773615555 1.0 21.49960118591568 2.014550881208784 2.0820308341754488 1.037383390562924 0.8562641129209282 0.8575861534978143 0.03256433817776226 0.11076190985917027 0.8997649387970936 0.01797483758706343 0.009573459459948424 103.40722440452616 -2.014550881208784 -0.18111927764199576 FEEAPDYMYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FEEAPDYMYLR 11 0 P48729-2;A0A5F9W493;U3KPX3;A0A590UJ43;P48729;E7ETM0;P48729-3;D6REM4;H0Y9X2;U3KQK7 P48729-2 CSNK1A1 Casein kinase I isoform alpha 0 145.17 8.460700000000001e-05 134020000.0 326590.0 354100.0 359540.0 308210.0 328750.0 506480.0 338250.0 271290.0 364930.0 293620.0 False True 324831.67572755995 365886.00444203 410160.10682229686 347229.35439851705 370614.3638460884 471468.2297256776 321887.55525951856 291535.0373827066 274997.8913114698 274880.9202192711 1.1817177979047924 1.3310709384636976 1.4921374189780587 1.2631991850199498 1.3482724212013377 1.7151726258395446 1.171007267447848 1.060586661126391 1.0004255336896624 1.0 18.068447245746274 2.0100552116260695 24.986817457159603 1.0492511288443105 1.388148823383302 0.5984061842253721 0.13629765035380037 146.04481541525575 362914.2536825165 0.051735229839323243 0.038166471846633916 102.34230912431293 -2.0100552116260695 0.33889769453899143 FEEEELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 FEEEELQR 8 0 Q8TDD1-2;Q8TDD1;H0YHH7 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 0 110.31 0.0080274 160200000.0 127970.0 157060.0 137840.0 153010.0 152020.0 147320.0 139130.0 158280.0 178730.0 157120.0 False True 127281.02373880376 162287.64715522525 157246.67387324202 172381.0503115313 171378.84590686625 137136.1151539781 132399.75037178665 170091.65732955452 134684.38635929892 147092.4670828004 0.8653129984362523 1.10330359109329 1.069032813112895 1.1719230340632985 1.1651096028622234 0.93231229221808 0.9001123782719409 1.1563587225293295 0.9156443496422098 1.0 17.16636383944858 2.73074761532853 24.698747990062838 0.9974638161209004 1.0815725316131477 0.15940048078355884 0.10402394242419041 1107.0710763434956 3499708.85199831 0.034435391628076295 0.03306549313438596 537.9570648063441 -2.73074761532853 0.0841087154922473 FEEESKEPVADEEEEDS(ph)DDDVEPITEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 FEEESKEPVADEEEEDSDDDVEPITEFR 28 1 P54105;E9PJF4 P54105 CLNS1A Methylosome subunit pICln 1 FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEES(0.002)KEPVADEEEEDS(0.997)DDDVEPITEFR 390.27 4.063499999999998e-146 8602540000.0 5075105.0 4152053.0 3635563.0 3532238.0 3745472.0 4887615.0 4934057.0 4710628.0 6695326.0 5294913.0 True False 5047781.198577172 4290251.574135957 4147418.669519916 3979418.9686314785 4222435.6580481725 4549745.679258143 4695377.812981854 5062158.981444309 5045352.620071949 4956987.119136908 1.0183163839764169 0.8654958084464338 0.8366813489404525 0.802789854601107 0.8518149344683726 0.9178449670957239 0.9472241303300776 1.0212168923944498 1.017826453612094 1.0 22.241032079255785 2.1349756557319126 1.809416830744194 1.0153595355464982 0.8697772961551996 0.5441505721683166 0.054139522091496764 0.26670625669368825 1.6943366350272269 0.03111558741213164 0.01776698882567457 136.45066473678014 -2.1349756557319126 -0.14558223939129855 FEEFYGLLQHVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 FEEFYGLLQHVHK 13 0 Q9BYG5-2;Q9BYG5 Q9BYG5-2 PARD6B Partitioning defective 6 homolog beta 0 116.54 0.00033387 42781000.0 208940.0 184790.0 184710.0 156920.0 158920.0 207270.0 174620.0 42622.0 258930.0 116970.0 False True 207815.09025541623 190940.62344208613 210715.56247189885 176786.05591062972 179157.5200073621 192941.91276109847 166172.96348682078 45802.67007013059 195120.17098424063 109504.87445694477 1.8977702251704345 1.7436723651709252 1.9242573768234235 1.6144126623343933 1.6360689046568737 1.7619481663983785 1.5174937582541754 0.4182706048226129 1.7818400500605858 1.0 16.740635565252678 1.971804386637187 12.666260260504853 0.9933966567598951 1.747226186564092 0.47877645659273094 0.3219760059524084 1.289715428883607 577.9030253532784 0.12504746932678798 0.08144757146545288 93.7139808699208 -1.971804386637187 0.7538295298041968 FEELCSDLFR ddPTM_BT-474_Trastuzumab_2h_R1 8 FEELCSDLFR 10 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 ;;;;;;; 249.46 1.2544e-12 3757997000.0 2382211.0 2681955.0 2535285.0 2039842.0 1645320.0 1947248.0 1931516.0 1832439.0 2948402.0 2076969.0 False True 2369385.4406645223 2771222.250898967 2892231.0909077404 2298085.788050286 1854841.749424321 1812639.329088743 1838081.1919723412 1969184.9031167002 2221807.8336626743 1944415.0602373774 1.2185594984927055 1.4252215525221512 1.4874556107144388 1.1818905515830205 0.9539330297091398 0.9322285998275764 0.9453131841860684 1.0127389688476796 1.1426612964988208 1.0 20.89090478283076 3.471983786161476 3.867277697385828 0.9944004170085374 1.3797666817765755 0.8023121915745852 0.0844192830197031 0.09000092302881232 3.0162530816284043 0.024289367062851022 0.03582310541097336 2964.720703337726 -3.471983786161476 0.38536626476803804 FEELNADLFR ddPTM_BT-474_Trastuzumab_2h_R1 10 FEELNADLFR 10 0 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;;;;;;;;; 323.56 2.9481e-42 11999119000.0 3874587.0 4187973.0 4171801.0 3502627.0 3009104.0 3336577.0 3777147.0 3324996.0 4804208.0 3639475.0 False True 3853726.6540990886 4327367.149621861 4759154.318855667 3946059.2190675633 3392295.558043254 3105927.2854474247 3594431.9695072416 3573124.085507577 3620275.3114890335 3407200.5895886896 1.131053647347573 1.270065273774871 1.3967931132079847 1.1581528927664113 0.9956254317427097 0.9115774677129784 1.0549516751349102 1.0486978948130896 1.0625365945731025 1.0 21.70015545397187 3.423993529229164 4.248994010486724 1.0164473245294658 1.2687994772938902 0.7148277676339223 0.072384090509536 0.11310461610044736 4.276808536697689 0.02117875802061673 0.029806153077594218 2654.5660099733814 -3.423993529229164 0.25235215276442435 FEELNMDLFR ddPTM_BT-474_Trastuzumab_2h_R1 6 FEELNMDLFR 10 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;;; 245.27 3.7141e-12 1006374000.0 848192.0 1079096.0 1021089.0 862808.0 842192.0 948116.0 942186.0 894632.0 1419360.0 907146.0 False True 843625.428514991 1115013.058032693 1164849.4557353086 972039.4043343023 949440.159136928 882574.9725449971 896608.8636799544 961393.9826892461 1069577.746449587 849251.1656332348 0.9933756498125628 1.3129367413953397 1.371619495943525 1.1445841273700363 1.1179733364616444 1.039239047598969 1.0557640659950203 1.1320490587403471 1.2594363007462792 1.0 19.695831767702764 3.494149832965441 22.292964953400407 1.105372884561993 1.238578042434308 0.1963825152047206 0.1122040764708016 264.50150777567654 346270.2816521417 0.029874152459079442 0.044946804557762725 3119.965796470914 -3.494149832965441 0.13320515787231502 FEEMFASR ddPTM_BT-474_Trastuzumab_2h_R1 5 FEEMFASR 8 0 Q9BTL3 Q9BTL3 FAM103A1 RNMT-activating mini protein 0 ;;;; 205.7 0.00017999 938946000.0 797916.0 1012398.0 911229.0 953159.0 836275.0 911433.0 925855.0 791388.0 1142025.0 932200.0 False True 793620.1089128024 1046095.0554224864 1039522.1226555477 1073828.831670406 942769.6642597325 848427.7819925036 881067.8565404336 850445.3911468382 860588.2411009823 872706.1979034279 0.9093783346782454 1.1986795303340396 1.1911478629954446 1.2304585830261676 1.080282993892588 0.9721803099723019 1.0095812985596913 0.9744922096232745 0.9861145058536795 1.0 19.735136517560193 2.923131790180042 4.260395306556051 0.9886220912999685 1.142989997282871 0.39946105037864477 0.08309768391786161 0.21466993808717433 7.270628115690233 0.02558946911746207 0.027808841192632276 837.7834757414597 -2.923131790180042 0.1543679059829025 FEEPAPLSYDSRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEEPAPLSYDSRPR 14 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 0 ; 195.71 2.3586e-08 715640000.0 277910.0 344320.0 279480.0 309770.0 286280.0 302040.0 329610.0 258730.0 336530.0 312580.0 False True 276413.7634387037 355780.4830541643 318828.354716292 348986.850238566 322736.06108550006 281160.68572568224 313665.5050675232 278037.74640431936 253596.69077096696 292630.87678679853 0.9445816739294054 1.2157995320274235 1.089523970324499 1.19258382461406 1.1028776752107237 0.9608032098763347 1.0718810964573975 0.9501312693222347 0.8666094759225609 1.0 18.158722477122364 2.346872966445848 1.126323205414338 0.9416473256043724 1.1183975860666462 0.3937835362763643 0.08411921011935966 0.46841936001557005 1.1685808236174207 0.05153333912287848 0.0322347326375092 222.2659655232152 -2.346872966445848 0.17675026046227382 FEFIGDAVTDDER ddPTM_BT-474_Trastuzumab_2h_R1 3 FEFIGDAVTDDER 13 0 A1A4S6 A1A4S6 ARHGAP10 Rho GTPase-activating protein 10 0 ;; 147.72 9.9837e-05 85384000.0 127477.0 150374.0 135809.0 141762.0 146841.0 157883.0 157285.0 142273.0 158872.0 159815.0 False True 126790.67799602613 155379.10768699742 154929.72672701065 159709.0546648146 165540.33095520452 146968.9198266054 149676.5236629514 152890.13370765533 119720.12437573202 149615.46987549477 0.8474436373560655 1.038523007121516 1.0355194342933804 1.0674635102755043 1.1064385995175627 0.9823109866172812 1.0004080713545693 1.0218872008013986 0.8001854652821616 1.0 17.19089982853128 -0.535080835846302 6.665204881397714 1.0000000000060467 0.9996145941023671 0.0 0.09085260406726017 0.0 0.0 0.08477563626837838 0.019981809094924863 0.2916884039717695 0.535080835846302 -0.00038540590367963645 FEGDFDFESANAQFNR ddPTM_BT-474_Trastuzumab_2h_R1 4 FEGDFDFESANAQFNR 16 0 Q9BX40;Q9BX40-2;Q5TBQ0;Q5TBP9;Q9BX40-3 Q9BX40 LSM14B Protein LSM14 homolog B 0 ;;; 294.81 2.8374e-45 501286000.0 336478.0 362596.0 307001.0 308803.0 318058.0 363680.0 329057.0 347621.0 371415.0 391303.0 False True 334666.4398342203 374664.78866608907 350224.072299472 347897.42813771486 358560.8010225374 338539.65761063434 313139.2557901885 373562.2442036712 279884.74995601753 366329.70752864686 0.9135662026756306 1.0227529489586655 0.9560351374781271 0.9496839076599033 0.9787925839852835 0.9241392402885061 0.8548016973635727 1.019743243658334 0.7640241678573956 1.0 18.48278317566452 2.6716260452434453 6.340294117377913 0.9174041843813004 0.9661105089097639 0.11319335238149186 0.0716018838089632 0.5704137524545865 43.460247603216 0.02205531812746061 0.02082594787881255 469.4896744863734 -2.6716260452434453 0.04870632452846346 FEGGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FEGGDR 6 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 107.65 0.07231 183290000.0 394350.0 392210.0 336860.0 346220.0 328350.0 330440.0 381410.0 263690.0 432270.0 321450.0 False True 392226.8634164036 405264.47275404836 384286.9599603917 390051.4165012632 370163.4262170741 307597.460572091 362959.74117230735 283367.8867906885 325742.85062124004 300934.785792809 1.3033616648307598 1.3466853680154791 1.276977531686782 1.2961327002249925 1.2300453244110119 1.0221399289607855 1.2061076296517015 0.9416255619773544 1.082436680635223 1.0 18.19909135541895 2.8021234092681104 0.9353360870561912 1.01845162331059 1.3275715155215932 0.762897194715324 0.06744451382859616 0.24369935112131483 0.4584108590343713 0.03587465903177517 0.03573825750097085 634.0498574842778 -2.8021234092681104 0.3091198922110032 FEGGDRDLEHLSK ddPTM_BT-474_Trastuzumab_2h_R1 6 FEGGDRDLEHLSK 13 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;;;;; 160.48 2.355e-05 7310070000.0 4811920.0 7331610.0 7244180.0 7305390.0 7554830.0 8604660.0 9520950.0 8311850.0 10247300.0 7966210.0 False True 4786013.157374575 7575638.206798163 8264097.576458673 8230251.62496148 8516892.819514347 8009840.1073909085 9060385.274938982 8932122.453719087 7721990.221785063 7457799.657584495 0.6417460078197804 1.015800712626254 1.1081147196082404 1.1035763902012854 1.1420114793312752 1.0740218932061274 1.2148871907177978 1.197688710320238 1.0354247333436866 1.0 22.83031861115395 4.848625414237874 1.814147363770463 1.1275766934095484 0.3802990654309471 0.8244046880365454 0.06420129892472 0.44100749729935396 1.1754384844238455 0.01652433726739015 0.6148325086512547 70570.86070105659 -4.848625414237874 -0.7472776279786013 FEGKPLLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEGKPLLQR 9 1 Q9H3K6;A0A087WZT3;H3BV85;Q9H3K6-2;H3BTW0;A0A0B4J295;H3BVE0 Q9H3K6 BOLA2;BOLA2B BolA-like protein 2 0 ; 106.88 0.002612 1387450000.0 1307660.0 1537960.0 1503990.0 1404140.0 1178540.0 1541440.0 1592450.0 1394850.0 2301080.0 1648150.0 False True 1300619.7038546829 1589150.0688835478 1715738.7190845727 1581903.9800302817 1328620.0832461417 1434883.8809594624 1515417.109750243 1498940.7899047844 1734009.6668922724 1542963.6559477944 0.8429360593433762 1.029933571512015 1.1119761068063836 1.0252373566495754 0.8610832005825904 0.9299531297631621 0.9821469895992913 0.9714686305971555 1.1238175703024738 1.0 20.55727264937838 1.2676094505089917 24.63525255880962 1.0619087755187104 0.9735253365043445 0.17411967422493602 0.08022713496342225 284.2095672994334 241028.17861614216 0.055276157449040304 0.020177424928082964 18.518655409071044 -1.2676094505089917 -0.08838343901436596 FEGLS(ph)PLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEGLSPLQR 9 0 Q9Y3E2 Q9Y3E2 BOLA1 BolA-like protein 1 1 FEGLS(1)PLQR;FEGLS(1)PLQR 101.39 0.0042096 193362000.0 307430.0 336220.0 310830.0 350470.0 320540.0 324170.0 339550.0 319250.0 398570.0 323770.0 True False 305774.831038684 347410.8794507176 354592.1622172068 394839.4660655018 361358.86901057034 301760.89091409906 323124.66929303616 343074.0561186526 300347.7640643757 303106.72140655713 1.0088025419553404 1.1461668610929128 1.1698591194934018 1.3026417369870973 1.1921836221041089 0.995559879087429 1.0660425733668537 1.1318589522747244 0.9908977361855305 1.0 18.209466318747744 2.7503533884018214 24.793900223259833 1.0545438139687988 1.1709794138630243 0.38601101183156294 0.07830559009750146 827.6292446087905 1740061.613020194 0.025437388622332326 0.026764476071918234 562.7990924066373 -2.7503533884018214 0.11643559989422547 FEGNFVHGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FEGNFVHGEK 10 0 Q8WTS6;D6RJA0;V9GYG1;B5MCZ8 Q8WTS6 SETD7 Histone-lysine N-methyltransferase SETD7 0 88.596 0.012086 315160000.0 508950.0 484640.0 454810.0 441400.0 461320.0 519530.0 539190.0 500260.0 694980.0 505890.0 False True 506209.86974966066 500770.9494289338 518843.29472061276 497281.19474223856 520066.36754213675 483616.11394207267 513107.3197941744 537591.9414688076 523711.4912548848 473603.6670857802 1.06884702321778 1.0573629053810367 1.0955221227766352 1.0499943925733368 1.0981046045151106 1.021140982539054 1.0834107830107642 1.1351093305015263 1.1058011743815932 1.0 18.853320726151114 2.0023719541113185 24.989448563287773 1.098801754712467 1.0657688293590946 0.0 0.0392179702392338 142.22961465110814 1498425.7954906393 0.013793195957920742 0.010119758766013374 100.54765680481599 -2.0023719541113185 -0.033032925353372544 FEHLLED ddPTM_BT-474_Trastuzumab_2h_R1 2 FEHLLED 7 0 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 0 ; 98.133 0.026723 112428000.0 229230.0 277340.0 244960.0 250660.0 245650.0 266650.0 246620.0 221820.0 320820.0 278490.0 False True 227995.85114984735 286571.0942444297 279448.2387695112 282393.53029925114 276932.0714183777 248217.11312658337 234690.04842011054 238373.33477913684 241758.20976775215 260716.52977271553 0.8744971074469539 1.099167338926509 1.0718470325342448 1.0831439439050257 1.0621960627498317 0.9520574447004616 0.9001732595348133 0.9143008116399187 0.9272837820390957 1.0 17.992122528983195 2.637575138192497 4.357185980546317 0.926027877076469 1.045793203722363 0.370555562564274 0.06401024344561129 0.2117321900769714 6.859432049482485 0.02067977382118389 0.019453274609870105 434.0853591600766 -2.637575138192497 0.1197653266458939 FEHQEWK ddPTM_BT-474_Trastuzumab_2h_R1 4 FEHQEWK 7 0 Q9UHB9;Q9UHB9-4;Q9UHB9-2 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 ;;; 137.18 0.002908 1350040000.0 2889770.0 2736310.0 2715630.0 2445480.0 2406090.0 3004570.0 2944180.0 2493560.0 3764600.0 3011870.0 False True 2874211.7994036307 2827386.4242156767 3097967.0993208997 2755077.5172592844 2712491.2994872527 2796871.1478970116 2801758.7655401872 2679642.1092411196 2836864.773055543 2819649.8780083596 1.019350601583843 1.002743796762732 1.0987063051633656 0.977099156440414 0.9619957855913666 0.9919214331222437 0.9936548460829436 0.9503456901301045 1.0061053307296945 1.0 21.42708460052249 3.6144143563650997 20.587375579623767 0.9793643730571024 1.0367712927559443 0.45928685356911725 0.028194644203423668 3.6222575738733793 584.8475253509781 0.007255777475236862 0.01124059819727284 4115.421824586299 -3.6144143563650997 0.05740691969884182 FEIGEGENLDLPYGLER ddPTM_BT-474_Trastuzumab_2h_R1 8 FEIGEGENLDLPYGLER 17 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;;;;; 350.97 2.616699999999999e-87 2966596000.0 1375133.0 1569717.0 1491076.0 1502322.0 1443048.0 1628921.0 1617312.0 1517761.0 1903873.0 1633881.0 False True 1367729.4367196385 1621964.0814310363 1701006.5401350714 1692515.8111634539 1626811.609184394 1516317.5253375855 1539076.4398281819 1631024.0328541948 1434689.009741161 1529605.3157440997 0.8941714719749688 1.060380782373267 1.1120558503731344 1.1065049223760732 1.0635499186880157 0.9913129287210602 1.0061918744571536 1.0663038471860686 0.9379471913270874 1.0 20.544728011474305 2.7469794179359472 23.586644948746116 1.0100174971387712 1.054940580263685 0.1047409360353555 0.06379544529283183 733.7303802783726 2055666.4962100068 0.020202389963019256 0.02107520439140709 558.4437283702749 -2.7469794179359472 0.04492308312491389 FEIWDTAGQER ddPTM_BT-474_Trastuzumab_2h_R1 6 FEIWDTAGQER 11 0 P20339-2;P20339;P51148;P51148-2;K7ERI8;K7ERQ8;F8VVK3;K7ENY4;F8VWU4;F8VVZ0;F8VUA5;P61020;P61020-2 P20339-2;P51148;P61020 RAB5A;RAB5C;RAB5B Ras-related protein Rab-5A;Ras-related protein Rab-5C;Ras-related protein Rab-5B 0 ;;;;; 239.54 2.7695e-15 888375000.0 1676210.0 1839310.0 1818180.0 1416630.0 1845660.0 1999380.0 1559550.0 1540660.0 1803410.0 1717190.0 False True 1667185.4716044401 1900530.321463625 2074163.9400961362 1595975.2127496547 2080693.8609161123 1861167.5666342685 1484108.6084404476 1655631.8725129622 1358983.7699559324 1607597.464039677 1.0370664976137909 1.1822177901972095 1.2902259343480427 0.9927704219806261 1.2942878472124528 1.157732335529694 0.9231842184616798 1.0298796244381856 0.84535077987806 1.0 20.616474776005983 2.2460455231806478 24.753637987238843 0.9593953558929742 1.1646547896468418 0.5122907325919273 0.0998430854630695 119.46505573154116 395088.1228154054 0.03353435011766293 0.027536272351243563 176.21607481779026 -2.2460455231806478 0.20525943375386757 FEKEAAEMGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FEKEAAEMGK 10 1 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5;P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 105.46 0.0023221 374860000.0 213650.0 296490.0 258800.0 289610.0 289580.0 328880.0 399550.0 354210.0 612620.0 399260.0 False True 212499.73213874668 306358.4904180101 295236.7904700746 326274.5963056174 326456.29652486724 306145.2997002459 380222.24007077795 380642.9488419355 461648.009687427 373778.88497631706 0.5685172188156398 0.8196249246059505 0.789870167462191 0.8729080464946286 0.8733941633582426 0.819054558739035 1.0172384138148123 1.0183639690242356 1.2350831688009274 1.0 18.511825546996704 3.502584925517532 0.3793943087166708 1.1105295068863814 0.5596196583680467 0.7053104150127767 0.0918817193631697 1.3553228619707027 0.2981530233803103 0.0905509953629343 0.31446449951522204 3181.155696879259 -3.502584925517532 -0.5509098485183347 FEKPLEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 FEKPLEEK 8 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;; 98.249 0.0069828 1694390000.0 1988370.0 1696250.0 1574760.0 1373860.0 1466490.0 2258130.0 2020190.0 2057640.0 3039170.0 2037290.0 False True 1977664.8368486764 1752708.6558452237 1796472.5199407067 1547790.5351349618 1653238.808932776 2102030.7881662534 1922465.6918247624 2211191.545284207 2290207.2762915622 1907268.407988278 1.0369095553439436 0.9189627681684935 0.9419086020701014 0.8115221374465689 0.8668097274659713 1.1021158738656003 1.0079680886931452 1.1593499562111957 1.2007786983202826 1.0 20.86307645630208 2.7303721063609747 24.65648432843971 1.1011647278495733 0.9111517706603862 0.5663876555623084 0.07806637155347905 368.79106726072 1110467.4069717592 0.025824673676669387 0.024728265161581907 537.4921259147231 -2.7303721063609747 -0.1900129571891871 FELAVDAVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FELAVDAVHR 10 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9;H3BUE3;H3BSQ5 Q8WWM7 ATXN2L Ataxin-2-like protein 0 ; 166.55 5.5135e-06 586530000.0 387620.0 479040.0 439390.0 435830.0 406170.0 468570.0 464630.0 418970.0 538230.0 469630.0 False True 385533.09698863083 494984.55681420513 501252.29275365564 491006.0333133434 457893.3419417969 436178.85879513604 442154.0718410342 450235.6688865523 405590.42841249704 439657.81132952846 0.8768935455116239 1.1258404696993058 1.1400964109744007 1.1167913333065493 1.0414766442045555 0.9920871358480541 1.0056777349274362 1.0240592963082729 0.9225138686515966 1.0 18.746021575543576 2.9131140430040445 3.8519866275332237 0.9948502045139307 1.0751573068421607 0.1867286436033304 0.07361403637842506 0.38541152218178554 10.584123120228144 0.02299130005566904 0.02501792072259575 818.6797400703526 -2.9131140430040445 0.08030710232823002 FELGDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 FELGDGR 7 0 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;Q9UQ88-9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 0 83.36399999999998 0.051959000000000005 207970000.0 228360.0 306160.0 259890.0 257070.0 247510.0 284510.0 274730.0 252520.0 305400.0 282970.0 False True 227130.5351331813 316350.35052237177 296480.2529956247 289615.0356420187 279028.9313932937 264842.4933645008 261440.26032948284 271364.3246705781 230138.2621503382 264910.6123371948 0.8573855653773332 1.1941777180285298 1.119170917238476 1.0932556951451178 1.0532946526057938 0.999742860536643 0.9868999132307518 1.024361848989155 0.8687393084026541 1.0 18.01514611376372 2.706834858311902 1.9269833939893224 0.9769420340476225 1.0790971320381209 0.19437181216990984 0.08880709654663964 0.5343816944577174 3.928452641903264 0.03251229228837869 0.031286582189403056 509.13723339079144 -2.706834858311902 0.10215509799049838 FELLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 FELLDR 6 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YGP5;A0A2R8YFV8;F6VDE0;P51531-2;P51531;A0A0U1RQZ9 A0A2R8Y4P4;F6VDE0 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 0 ;; 115.78 0.056159 397397000.0 561930.0 637620.0 574740.0 562880.0 542160.0 624790.0 581260.0 552570.0 694920.0 627810.0 False True 558904.6313162921 658842.7962505699 655658.396270365 634140.5502866129 611200.8623659165 581599.7378974612 553142.2331711686 593805.5792936054 523666.27745092666 587742.6283048169 0.9509343110407014 1.1209716030821553 1.1155535853532226 1.0789425843002374 1.0399124258329848 0.9895483327029159 0.941130022790003 1.010315656372034 0.8909788948970726 1.0 19.164825013589837 2.794030852603666 2.2995445920374284 0.9657433933925084 1.0734178308163507 0.44785409175963586 0.05351809233093632 0.2731310032738881 2.8432082984888862 0.018153024564286024 0.018689882572213178 622.3444954155527 -2.794030852603666 0.1076744374238423 FELPFDIPEEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FELPFDIPEEEAR 13 0 O14795;O14795-2;A0A1B0GUS7;A0A0U1RRL2;B1AM27 O14795 UNC13B Protein unc-13 homolog B 0 104.79 0.0034979 16417000.0 40230.0 41302.0 34242.0 32932.0 36045.0 37179.0 30955.0 33237.0 44295.0 41106.0 False True 40013.406149973176 42676.71210241378 39062.97596320051 37101.187823405955 40635.11709454676 34608.903239952146 29457.58839041651 35717.31371406623 33379.09077259079 38482.57988738283 1.039779720254469 1.108987812857268 1.0150820469291866 0.9641034445190669 1.055935366429777 0.8993394762314068 0.7654785224021501 0.9281423911440189 0.8673818353725992 1.0 15.231917900745986 2.6911080339500213 5.742308731528745 0.8793660898191059 1.0356029762579173 0.5538844837803559 0.06452674186183208 0.14755507401426013 12.025838138012992 0.02062734802711233 0.019635639629092067 491.0300082912848 -2.6911080339500213 0.1562368864388114 FELQHGTEEQQEEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FELQHGTEEQQEEVR 15 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 262.23 5.4592e-25 911150000.0 274620.0 342440.0 350540.0 359330.0 343530.0 387440.0 383480.0 334780.0 414190.0 341780.0 False True 273141.4764331505 353837.90839064895 399892.9850517002 404821.1411570652 387276.50923816476 360657.184735659 364929.6073641391 359762.98357839434 312118.4243616518 319967.30778742075 0.8536543258807544 1.1058564415141159 1.2497932611208526 1.2651953224734431 1.2103627458573447 1.1271688574361218 1.1405215423026602 1.1243741933079394 0.9754697332047949 1.0 18.287564981729496 1.2926100348173497 4.409891219924194 0.9858522707208836 1.1452652825195855 0.22421667743907558 0.1081737551961247 0.2938490268482533 10.51848557749932 0.0878530523804685 0.028354812211743956 19.615981119043028 -1.2926100348173497 0.15941301179870193 FELSENCSERPGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FELSENCSERPGLR 14 1 E7EX90;Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2;Q6AWB1 E7EX90 DCTN1;DKFZp686E0752 Dynactin subunit 1 0 ; 246.86 8.2515e-18 888040000.0 476520.0 501830.0 467120.0 450440.0 458710.0 543110.0 543120.0 481590.0 554380.0 516280.0 False True 473954.469266349 518533.1081873596 532886.4357201742 507465.6578153467 517123.9995128185 505566.08404342283 516847.2106801175 517528.69126446894 417760.4773114093 483330.5683904547 0.980601063252984 1.0728332576069692 1.102529967212184 1.0499349534321087 1.0699178436714645 1.0460047783176945 1.0693451738450497 1.0707551417405645 0.8643369665249993 1.0 18.882650715779526 1.255349870259724 24.998500808710116 0.9321684834502415 1.0605355758455774 0.5816628774783233 0.04254424165519167 126.42554127355561 188243.8423761916 0.026240863391576066 0.009525656775691206 18.00320680302717 -1.255349870259724 0.12836709239533595 FEMDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FEMDLR 6 0 Q9BX97 Q9BX97 PLVAP Plasmalemma vesicle-associated protein 0 100.82 0.086601 217770000.0 705440.0 724280.0 678080.0 714420.0 583340.0 836340.0 734360.0 682560.0 853250.0 909250.0 False True 701641.989421753 748387.2219634935 773547.770022983 804865.498748868 657624.8912729344 778525.7843325946 698836.2012723724 733496.0931694503 642977.9704642309 851220.8865519101 0.8242772240516031 0.8791927380859146 0.9087509273373658 0.945542469016689 0.7725666764790203 0.9145990149351413 0.820981031261097 0.8616988900973348 0.7553597199297812 1.0 19.699174025364226 3.257975895652198 24.99987935159537 0.848906040897641 0.8900880836246294 0.05268039670109137 0.07109171047963776 676.5008214157108 871083.5630394856 0.01834766363041424 0.024806954973822497 1811.2395618466494 -3.257975895652198 0.041182042726988444 FENAAAGNKPEAVEVTFADFDGVLYHISNPNGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FENAAAGNKPEAVEVTFADFDGVLYHISNPNGDK 34 1 O15144;C9JTV5;G5E9J0 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ; 331.15 1.559999999999999e-117 413340000.0 187426.0 217811.0 280570.0 236620.0 232830.0 320230.0 340170.0 313860.0 385690.0 329600.0 False True 186416.9192409862 225060.7074654701 320071.81724184257 266576.06773880497 262479.5204084704 298093.25384033634 323714.67752440623 337281.82694878656 290641.8674812179 308564.64581524325 0.6041421846902238 0.7293794364252212 1.0372925789868013 0.8639229132504719 0.8506467735958096 0.9660641874663218 1.0490984042229978 1.0930669845784537 0.9419156453044953 1.0 18.235213247204467 5.326967591360788 0.5899909027574638 1.0130078429184781 6.5236871508687826e-21 0.6948079806730858 0.08062993683337097 4.020059621312093 0.64013832795491 0.040260309375560334 3.2272922383457376 212308.60236613083 -5.326967591360788 -1.0130078429184781 FENAFLSHVVSQHQALLGTIR ddPTM_BT-474_Trastuzumab_2h_R1 3 FENAFLSHVVSQHQALLGTIR 21 0 P25705;P25705-2;P25705-3 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial 0 ;; 292.14 5.4334e-55 1892250000.0 290847.6 342981.7 425988.0 385589.5 473808.1 744794.1 410296.9 323424.9 436940.2 442107.1 False True 289281.7088378063 354397.63854768383 485963.4076459271 434405.09116461786 534144.7530543688 693308.2369237272 390449.27146063274 347560.5083563646 329262.1424087134 413891.4463710692 0.6989313535570253 0.856257459908831 1.17413252171982 1.049562862372269 1.2905431067437136 1.6750967989373484 0.9433615381134993 0.8397383212523885 0.7955277773813126 1.0 18.658892908060455 2.016227193131867 24.999635987600385 0.8683486533324793 1.1342719054791472 0.1726877651189742 0.2481821268133122 413.7486576024243 637419.1546947496 0.10081207445412294 0.07443516446522251 103.80713216270296 -2.016227193131867 0.2659232521466679 FENLCK ddPTM_BT-474_Trastuzumab_2h_R1 3 FENLCK 6 0 P08238;Q58FF7;P07900;P07900-2;Q58FG0;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 2 0 ;; 108.24 0.07115 3626550000.0 3294720.0 3168660.0 2868260.0 2607760.0 2630480.0 3346730.0 3417130.0 2880530.0 4379970.0 3388440.0 False True 3276981.5935978056 3274126.9326045774 3272086.076637152 2937902.1486203424 2965456.0359235248 3115378.432455011 3251830.3671957385 3095489.775634958 3300585.082091084 3172186.8582105683 1.0330354862658853 1.0321355831010262 1.031492223784994 0.9261441018255823 0.934830187650528 0.9820917151811155 1.0251068151231473 0.9758220161661992 1.040476248600609 1.0 21.59704632506776 3.9305864452615924 24.99932609592715 0.9823280495333896 1.0323933901654754 0.31191384888589435 0.033134694238756514 195.56038597317772 70430.97675961391 0.008981699667170183 0.016191999427023884 8522.88140380431 -3.9305864452615924 0.050065340632085786 FENYGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 FENYGDK 7 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;M0R3F1;M0QYZ0 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;; 125.31 0.009448200000000002 978940000.0 1326390.0 1131230.0 1010250.0 879350.0 1018860.0 1265960.0 1053550.0 1179430.0 1743700.0 1205040.0 False True 1319248.8636157839 1168882.3067070248 1152484.4187495846 990675.6198382139 1148605.7817436508 1178447.1649492928 1002585.7615481623 1267445.0556241896 1313988.4993829227 1128133.3155133508 1.1694086554083079 1.0361207231745757 1.0215853063652791 0.8781547413014857 1.018147204721974 1.0445992053811894 0.8887121298176903 1.1234887208764381 1.1647457630351068 1.0 20.105506135522905 -0.667104437718762 5.798117912129379 0.9999999991773062 1.0326467918917193 0.0113976873092837 0.0945931842534468 1.3706987733151804e-09 1.1820203476949287e-10 0.09198603550732706 0.021681316009284 0.21522641030446824 0.667104437718762 0.032646792714413064 FEPES(ph)PGFESR ddPTM_BT-474_Trastuzumab_2h_R1 6 FEPESPGFESR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR 309.35 1.5034e-45 6942980000.0 5236560.0 6227220.0 5742290.0 5599050.0 5799560.0 6260360.0 6022760.0 5554350.0 6871150.0 5950500.0 True False 5208366.9427965125 6434489.253266022 6550754.519120575 6307889.155916469 6538099.589314734 5827596.04850229 5731416.089622525 5968843.8014178155 5177847.151192847 5570733.995520637 0.9349516503542442 1.1550523249611129 1.1759230515023622 1.1323263973811297 1.1736513706401963 1.0461091937235187 1.0288439717694455 1.0714645154870603 0.9294730560382696 1.0 22.409435997775045 2.559576686650845 5.601393709186619 1.0219888861912365 1.1208581860857807 0.31690980540608404 0.07297601091890196 0.28976570086444375 15.068079873008802 0.02389541804258373 0.022303623003874274 362.7243295598892 -2.559576686650845 0.09886929989454418 FEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIK ddPTM_BT-474_Trastuzumab_2h_R1 1 FEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIK 34 2 P63279;H3BQQ9;B0QYN7 P63279 UBE2I SUMO-conjugating enzyme UBC9 0 165.37 1.4958e-14 657890000.0 376960.0 305340.0 332280.0 236960.0 275500.0 366970.0 384950.0 383530.0 511410.0 371200.0 False True 374930.4892441934 315503.05731807236 379062.13577046513 266959.11170394364 310583.2919835656 341602.2276544619 366328.4978481936 412150.95612587826 385379.8580429095 347509.69819969113 1.0789065490446985 0.9078971290659443 1.09079584752378 0.7682062201053729 0.8937399260871668 0.9830005591906256 1.0541533077954233 1.1860128170841495 1.1089758358958282 1.0 18.40669371514882 2.178220464429588 2.9736719492828376 1.1186151988187527 0.944289856679209 0.31170434948301873 0.09716193124731018 0.2615577654287172 4.698028800267007 0.04070478938844444 0.028345252022475398 150.7372071505484 -2.178220464429588 -0.17432534213954376 FEPYANPTKR ddPTM_BT-474_Trastuzumab_2h_R1 3 FEPYANPTKR 10 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 129.89 0.00046686 3477630000.0 4700310.0 4943480.0 4675180.0 4662460.0 3630020.0 3540950.0 3792310.0 3310810.0 4633040.0 3601390.0 False True 4675004.053213533 5108020.74340323 5333404.706606962 5252726.957947211 4092281.5301857824 3296172.460999716 3608861.477268956 3557879.4541525333 3491289.371555348 3371546.206894894 1.3866053633353848 1.5150380359483737 1.5818868789933886 1.5579578732171182 1.2137699675647236 0.9776441604919912 1.0703876666108703 1.0552664077023721 1.035515801152473 1.0 21.68497893919877 3.0744608164116927 3.492976156250303 1.0390311757735982 1.5155451026256468 0.9418935523930426 0.05637475054860969 0.052468913815533126 1.2853187100695738 0.017796047213167254 0.021410494003497066 1187.0275983725676 -3.0744608164116927 0.47651392685204863 FEQIYLSKPTHWER ddPTM_BT-474_Trastuzumab_2h_R1 1 FEQIYLSKPTHWER 14 1 P30876;C9J2Y9 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2;DNA-directed RNA polymerase 0 80.719 0.0093207 304750000.0 360660.0 475780.0 416400.0 408180.0 353630.0 461060.0 468760.0 406160.0 623950.0 473780.0 False True 358718.24663309264 491616.04968491703 475025.50058631704 459855.5461483613 398662.6843707746 429188.007418498 446084.28796290216 436469.7216386903 470185.8830016488 443542.9547765351 0.808756497583918 1.1083843050389608 1.0709796998706549 1.0367779291636923 0.8988141510930503 0.9676357223050259 1.0057296213568478 0.9840528790691571 1.060068428408556 1.0 18.758714303071898 1.262364897236432 24.832622833591675 1.030034257716364 0.9909580550119429 0.04247328977357545 0.08160494982943582 748.0517944986453 780370.7399080778 0.05336962376943651 0.01946416022251897 18.296368440783567 -1.262364897236432 -0.039076202704421026 FEREPVIVASDRPVPGPS(ph)PGPPEPVMLPQPTSQPPVPQLPEGEASR ddPTM_BT-474_Trastuzumab_2h_R1 2 FEREPVIVASDRPVPGPSPGPPEPVMLPQPTSQPPVPQLPEGEASR 46 2 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 1 FEREPVIVAS(0.002)DRPVPGPS(0.998)PGPPEPVMLPQPTSQPPVPQLPEGEASR;FEREPVIVAS(0.156)DRPVPGPS(0.766)PGPPEPVMLPQPT(0.039)S(0.039)QPPVPQLPEGEASR 105.66 9.5066e-08 359710000.0 35489.9 41969.6 44943.1 31756.3 44598.6 44586.9 45449.6 34596.2 47338.0 37482.7 True False 35298.82632169859 43366.53276484103 51270.69782757186 35776.644323953224 50277.96735338751 41504.712549273 43251.02921366744 37177.944119944004 35672.184196701746 35090.52199544605 1.0059361991331897 1.2358474681701521 1.4610981801360956 1.019552924536039 1.4328076213831316 1.1827898301045328 1.232555879883475 1.0594867789304718 1.0165760486928974 1.0 15.09879378852179 1.659788407796464 2.7784567082425307 1.010732326068062 1.234369918480728 0.30379397407086706 0.13865371949434455 0.27023351779295135 4.799215612602786 0.08571269206707698 0.036102364004328334 45.686554635188635 -1.659788407796464 0.2236375924126659 FES(ph)PEVAER ddPTM_BT-474_Trastuzumab_2h_R1 1 FESPEVAER 9 0 A0A087X0X3;P52272-2;P52272 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 FES(1)PEVAER 149.95 9.063e-05 144480000.0 225230.0 231010.0 211100.0 227660.0 235140.0 266200.0 247810.0 227920.0 295750.0 255670.0 True False 224017.38670540522 238699.02820150604 240821.04508590707 256481.73265749458 265083.685216028 247798.22056739707 235822.48357386916 244928.5477543091 222866.3753469631 239352.9217099003 0.9359291923618881 0.9972680780175025 1.0061337182162586 1.0715629908556314 1.1075013554140518 1.0352838761990655 0.9852500729432913 1.023294581092127 0.9311203462854771 1.0 17.868779891151092 -0.2973386718317337 6.479699147927289 1.0000050660211268 1.0148303949328081 0.0 0.05175743071082679 0.0 0.0 0.05176381245400242 0.012200847602097928 0.5042679056390849 0.2973386718317337 0.014825328911681313 FESDPATHNEPGVR ddPTM_BT-474_Trastuzumab_2h_R1 4 FESDPATHNEPGVR 14 0 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;D6R9Y6;D6RDP1 D6RGI3 SEPT11 Septin-11 0 ;;; 169.04 3.3946e-06 4447830000.0 5221530.0 6386990.0 6285840.0 6276180.0 6261120.0 7121400.0 6661900.0 5972300.0 7254300.0 6672940.0 False True 5193417.862646517 6599577.101133013 7170831.634499277 7070743.744488767 7058436.519434283 6629114.379972436 6339638.446070618 6417983.35272491 5466574.967639809 6247067.2562086405 0.8313369537497848 1.0564280534316373 1.1478716876903405 1.1318501073382101 1.1298800268909004 1.0611562366939622 1.0148183437228047 1.0273594135466373 0.8750626083314309 1.0 22.574747631431276 1.5437225057461303 2.2584136531469503 0.9407214690549173 1.0653553148399473 0.18514263507835282 0.09047848328464815 0.4344697527063034 4.65547450340934 0.07221973854079021 0.025297973478511985 34.97216395372998 -1.5437225057461303 0.12463384578503 FESILPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FESILPR 7 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 146.21 0.005198899999999999 356380000.0 455229.0 558823.0 475527.0 460747.0 489321.0 524276.0 480892.0 457032.0 609160.0 531177.0 False True 452778.0976446964 577423.0857393633 542477.0682452212 519077.52295854525 551633.1289172067 488034.0341329549 457629.4167741622 491138.0486014723 459040.680325802 497276.8290964907 0.9105151721373291 1.1611703018386992 1.0908955264029805 1.0438401561996455 1.109307927979425 0.9814131798975448 0.9202709436625784 0.9876552050370574 0.9231089273953093 1.0 18.923689683927808 2.602478408973913 5.319659709848431 0.9579255593652595 1.0686541003911594 0.3797712336331114 0.06457851600064314 0.2208873396507989 8.679111556729621 0.02001325742575703 0.018760391288768538 400.3855625975059 -2.602478408973913 0.11072854102589991 FESPATGILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR 150.56 7.1562e-05 2305860000.0 1281874.0 1749948.0 1580165.0 1654206.0 1530843.0 1532853.0 1562919.0 1388401.0 1576403.0 1527322.0 True False 1274972.5328135907 1808193.961314097 1802638.4969596008 1863628.3099904396 1725786.7820326625 1426890.4800578363 1487314.6370396183 1492010.5327774242 1187919.6033679754 1429847.0023538484 0.8916845863331534 1.2646066035998291 1.2607212477922842 1.3033760303882094 1.2069730392074334 0.9979322806627946 1.0401914572616269 1.0434756518153625 0.8308018979739746 1.0 20.447429352164022 2.736781209289827 22.533119848745983 0.9947877623506505 1.2005993672355577 0.4106659819745898 0.12045912225571091 40.65206494886745 514782.3506161504 0.03804692155523289 0.03764228913724714 545.4829861333412 -2.736781209289827 0.20581160488490724 FESPEVAER ddPTM_BT-474_Trastuzumab_2h_R1 4 FESPEVAER 9 0 A0A087X0X3;P52272-2;P52272 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;; 189.82 8.786200000000001e-05 5687890000.0 2186340.0 2613520.0 2450760.0 2564030.0 2406640.0 2496560.0 2609030.0 2169930.0 2768830.0 2389290.0 False True 2174568.988365208 2700509.4332937966 2795805.70561221 2888635.935104083 2713111.3387271445 2323978.683470099 2482821.2514375173 2331861.1952812728 2086488.9469211544 2236803.4666259154 0.9721770467592378 1.2073074248974383 1.2499112002135424 1.2914124902807924 1.2129413152330772 1.0389731230950219 1.1099863213207126 1.0424971304245814 0.9327994068555779 1.0 21.093007071058665 2.086918224092321 1.0950475457551794 0.9815265314774047 1.1913288675344755 0.4477005388418467 0.08932613728392562 0.4786049932187127 1.068476237153507 0.06908278733697953 0.03435491519248714 122.15696218515066 -2.086918224092321 0.20980233605707088 FEVIEFDDGAGSVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 FEVIEFDDGAGSVLR 15 0 P10586-2;P10586;A2A437 P10586-2 PTPRF Receptor-type tyrosine-protein phosphatase F 0 ;; 117.79 0.00079566 68550000.0 142786.0 183396.0 146199.0 157181.0 160132.0 174815.0 180149.0 156154.0 195247.0 159643.0 False True 142017.25604101588 189500.2249947769 166782.54841551182 177080.09848386902 180523.86102327553 162730.45052024617 171434.50463398965 167807.00441394537 147130.99302575993 149454.44706275145 0.9502377402084735 1.2679463791078187 1.1159423603198961 1.1848432881325932 1.207885510074377 1.088829765312507 1.147068608550734 1.1227969974254979 0.9844537644569654 1.0 17.189346299923383 1.2858437602197772 4.323886946160065 0.9896548564231784 1.143298454982653 0.34277333306652813 0.07920261520406573 0.19889706099340726 6.99691471350134 0.05758749266498307 0.018320607580517782 19.312734060102287 -1.2858437602197772 0.15364359855947463 FEWELPLDEAQR ddPTM_BT-474_Trastuzumab_2h_R1 6 FEWELPLDEAQR 12 0 Q9BSJ8-2;Q9BSJ8 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 0 ;;;;; 280.11 1.2114e-27 428093000.0 486444.0 657411.0 640921.0 582347.0 723988.0 726921.0 574856.0 522507.0 639302.0 640611.0 False True 483825.03955300874 679292.5277216579 731157.1058148015 656072.0704906163 816183.580386925 676670.662257974 547048.0191168245 561499.1255767846 481754.5883079095 599726.657525329 0.8067425942835879 1.1326702243396083 1.2191505857548472 1.0939518233152867 1.3609259654302661 1.1282984569172587 0.9121622530072716 0.9362584079449062 0.8032902694300577 1.0 19.193945575679475 2.243403960284995 7.069994349629315 0.9102573268165679 1.138295317716767 0.35872444432024564 0.13719699999551604 0.14253655561306902 38.141713466133574 0.049858946263009095 0.039431159806843925 175.14750708546632 -2.243403960284995 0.22803799090019905 FFDANYDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FFDANYDGK 9 0 Q15691;C9JB30;Q9UPY8;Q9UPY8-2 Q15691;C9JB30;Q9UPY8-2 MAPRE1;MAPRE3 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 3 0 ; 116.52 0.0030263 244620000.0 799400.0 689470.0 679840.0 556760.0 593750.0 800450.0 718440.0 850090.0 928700.0 843860.0 False True 795096.1192216891 712418.592156583 775555.5627247882 627245.7589141104 669360.5430680299 745116.7755566224 683686.3124926776 913528.0324695543 699834.3289424329 790004.1323351061 1.0064455193057433 0.9017909691824084 0.981710767046736 0.7939778201666969 0.8472873946741568 0.9431808582496841 0.8654211851675095 1.1563585493778803 0.885861605399268 1.0 19.591500674161708 1.7691826537221065 24.99999999999812 1.0293854264388775 0.9033611337531544 0.24818147395683465 0.08513890234523044 29.619819812125463 24194.65540853983 0.03801729698654161 0.02108723276463845 58.7736488263613 -1.7691826537221065 -0.12602429268572313 FFDANYDGKDYDPVAAR ddPTM_BT-474_Trastuzumab_2h_R1 5 FFDANYDGKDYDPVAAR 17 1 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 ;;;; 150.7 2.5314e-07 2824010000.0 4580591.0 5169262.0 4696575.0 4910453.0 4767094.0 5448357.0 5601208.0 4978253.0 8151630.0 5786604.0 False True 4555929.607007504 5341317.760785135 5357811.936638295 5532115.846319913 5374155.16412017 5071724.9046428315 5330256.170347547 5349755.517916523 6142770.012745777 5417297.97855907 0.8409966786097526 0.9859745175409117 0.9890192412977441 1.0211946745804414 0.9920361009105179 0.9362093288418009 0.983932615751243 0.9875320757857753 1.1339176905272752 1.0 22.369142017778724 4.755384203389854 3.3556854054863825 1.000508325660519 0.8166239228545463 0.5087997987179105 0.04797663389517059 0.2893251715483234 5.240735000874536 0.011518989030891743 0.13974922053723168 56935.639551038694 -4.755384203389854 -0.18388440280597262 FFDDDLLVSTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FFDDDLLVSTSR 12 0 O43924 O43924 PDE6D Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit delta 0 ; 150.61 0.0001588 76577000.0 109603.0 136312.0 124297.0 128279.0 119375.0 131599.0 129972.0 121388.0 140069.0 122187.0 False True 109012.90962603803 140849.06251765604 141796.93719110842 144519.10824725774 134576.69865894064 122501.87088072469 123684.75781874401 130446.5889557745 105550.87177844047 114388.92105044634 0.9530023417037263 1.231317344583927 1.2396037648486513 1.2634012710332652 1.1764836788659923 1.0709242622080548 1.081265184450845 1.1403778246867684 0.92273684207487 1.0 16.803587803479825 2.733931323246437 4.604245920511025 1.061143793862873 1.185559966663982 0.2956247413911237 0.09733897452027689 0.2730216945171676 16.0088852692006 0.03151469830915052 0.03135712245866188 541.9151883718125 -2.733931323246437 0.12441617280110906 FFDEESYSLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FFDEESYSLLR 11 0 A6NLM8;P51571 A6NLM8 SSR4 Translocon-associated protein subunit delta 0 ; 234.2 3.9962e-15 164261000.0 206868.0 317910.0 341620.0 273400.0 324920.0 366850.0 307670.0 253400.0 398950.0 319540.0 False True 205754.24567319543 328491.44216934644 389717.12658572994 308012.4119676664 366296.6360482767 341490.52297201246 292786.82668646245 272309.99473912735 300634.1181561147 299146.68362804275 0.6878038665774716 1.0980948816995437 1.302762650948529 1.029636726144179 1.2244716592069187 1.1415487507012438 0.9787400051892665 0.9102891980501312 1.0049722581244505 1.0 18.19049354364764 2.1492141488572583 6.247002390325605 0.9581939561798672 1.0955405484627994 0.0968896579530053 0.1544873573807882 0.42162200852363313 24.06235328108801 0.0588921653186051 0.04338431832781124 140.99838844018385 -2.1492141488572583 0.1373465922829321 FFDHSGTLVMDAYEPEISR ddPTM_BT-474_Trastuzumab_2h_R1 2 FFDHSGTLVMDAYEPEISR 19 0 E9PL01;A0A087WUC6;E9PI68;Q15005;E9PRB9 E9PL01 SPCS2 Signal peptidase complex subunit 2 0 ; 213.99 8.960599999999997e-18 444800000.0 388997.0 677660.0 703660.0 642870.0 730920.0 706780.0 668630.0 589700.0 530300.0 670610.0 False True 386902.6833736298 700215.5034458803 802729.2116776376 724257.2760850544 823998.3294977432 657921.9621811602 636285.8124853563 633706.4084359256 399614.6706559403 627811.095661893 0.6162724520912192 1.1153283340869473 1.2786158403768426 1.153622930670697 1.312494053054307 1.0479616666977218 1.0134988325023606 1.0093902653437772 0.6365205607502553 1.0 19.259971001150614 1.485655777466932 3.512423987813864 0.8160414378881544 1.0951021498554419 0.19772299993259812 0.1984211316443547 0.30723971584514725 7.6574773194362376 0.13878855357877415 0.05147897408053358 30.595374778848218 -1.485655777466932 0.27906071196728743 FFDS(ph)EDEDFEILSL ddPTM_BT-474_Trastuzumab_2h_R1 9 FFDSEDEDFEILSL 14 0 Q9Y4P1;Q9Y4P1-4 Q9Y4P1 ATG4B Cysteine protease ATG4B 1 FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL 156.36 2.6866e-07 929314000.0 2200554.0 2407253.0 2128294.0 2214668.0 2251758.0 2566844.0 2341392.0 2221535.0 2645371.0 2452310.0 True False 2188706.4617685364 2487376.960889835 2427939.2957369247 2495044.7417249763 2538506.0340846856 2389404.1159808435 2228129.923973969 2387317.222426154 1993454.7632053103 2295801.4762717793 0.9533517964814807 1.0834460150836565 1.0575562917050336 1.086785929668777 1.1057167008216413 1.040771225507298 0.9705237787338198 1.0398622211459634 0.8683045044654911 1.0 21.13056646326238 1.8759352075504747 1.3119269085418872 0.9547592691634654 1.0596000378840864 0.34363822209453976 0.056343780027888375 0.48306905017196183 1.5457042879405873 0.04193552417404227 0.01788409086384774 75.15107676664073 -1.8759352075504747 0.10484076872062098 FFEDLEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 FFEDLEQR 8 0 Q5VV41;Q5VV41-2;B0QZD3 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 0 ;; 105.14 0.010343 325409000.0 590590.0 747380.0 676960.0 672860.0 698060.0 744940.0 747960.0 619320.0 812670.0 742480.0 False True 587410.3290607175 772256.0914992497 772270.0837581974 758044.0070101091 786953.8032742215 693444.0512001383 711778.3173153276 665536.8032432375 612398.3677200889 695094.2907308917 0.845080065962066 1.1110091131481201 1.111029243163766 1.090562844665327 1.132154031141213 0.9976258767295898 1.024002537219652 0.9574770101239437 0.8810292011982316 1.0 19.406849169600875 1.95092818205088 1.6504538214540598 0.9374838686419478 1.0618982590855284 0.23021957015102934 0.08259039490138347 0.49314921262261724 2.500668747174318 0.05364821698062331 0.02525461603846737 89.31577727534037 -1.95092818205088 0.1244143904435806 FFEDYGLFMR ddPTM_BT-474_Trastuzumab_2h_R1 1 FFEDYGLFMR 10 0 Q12931-2;Q12931;I3L0K7 Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial 0 76.221 0.085254 66387000.0 57428.0 77434.0 82818.0 103120.0 106430.0 82023.0 81726.0 66380.0 72320.0 78605.0 False True 57118.81402885061 80011.34388015846 94478.05453303957 116174.98142686806 119983.22963996709 76352.94307137343 77772.60115636187 71333.61267081014 54497.705038351174 73588.3616028738 0.776193582581678 1.0872825829707535 1.2838722384240442 1.5787140642404403 1.6304647504923042 1.0375681888858859 1.0568600721955013 0.9693599791739946 0.7405750563173689 1.0 16.167189993854638 2.4980483659568926 23.797538111330333 0.9591651184172233 1.2843742110037555 0.30439956530669243 0.23719293109860037 567.5451953931755 645391.5801586629 0.0845054894738397 0.07879146749435079 314.80988880629434 -2.4980483659568926 0.3252090925865322 FFEEVLLFEDELHDHGVSSLSVK ddPTM_BT-474_Trastuzumab_2h_R1 3 FFEEVLLFEDELHDHGVSSLSVK 23 0 O75663;O75663-2 O75663 TIPRL TIP41-like protein 0 ;; 258.91 6.6835e-44 246003000.0 207961.0 267061.0 238588.0 245590.0 243501.0 275409.0 291103.0 55757.3 320995.0 184815.0 False True 206841.3610826394 275949.9639432165 272179.116555928 276681.66881909024 274509.409006498 256370.6240730513 277021.2357685489 59918.192855832494 241890.0833626321 173019.94847191792 1.1954769545906487 1.5949025900213158 1.573108297394414 1.5991316103298758 1.5865766429300052 1.4817402636937071 1.6010941987623524 0.3463080031234522 1.3980473667861033 1.0 17.400578858555253 1.7654112421462849 24.99999999999561 0.855322053871148 1.5281370022556775 0.5162180384236549 0.2660172096022642 11.709016871143643 10908.83502384868 0.11365086723769222 0.06303098603191763 58.26546840266098 -1.7654112421462849 0.6728149483845295 FFEHEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 FFEHEVK 7 0 J3QL14;R4GN72;F5GYQ1;P61421 J3QL14 ATP6V0D1 V-type proton ATPase subunit d 1 0 105.39 0.02046 0.0 472380.0 469110.0 402000.0 395820.0 424380.0 518400.0 473450.0 414940.0 662220.0 458090.0 False True 469836.7585663517 484724.04276701703 458598.1057533618 445930.7714156611 478422.27750266995 482564.22818233847 450547.4147453628 445904.9298226262 499024.7542933755 428854.30400942004 1.095562651869833 1.1302767355609185 1.0693564258673929 1.0398188085011406 1.115582315555264 1.12524049233219 1.0505838708697355 1.0397585512231016 1.1636230524630904 1.0 18.71012807418 -2.191296510551041 2.5159050080638705 0.7353960193894358 1.0873598799455173 0.3152618520624335 0.04019863152690737 46606029.16258595 5001543.772121803 71986186.66328406 0.01016062528888969 0.006437296149925216 2.191296510551041 0.35196386055608153 FFEHFIEGGR ddPTM_BT-474_Trastuzumab_2h_R1 8 FFEHFIEGGR 10 0 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8;F5H3F0;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ;;;;;;; 242.59 2.2739e-12 14327450000.0 5562943.0 6677480.0 6110875.0 6181851.0 5445920.0 6192400.0 6016084.0 5099564.0 7336180.0 6069916.0 False True 5532992.7329890765 6899735.8851780975 6971233.08332231 6964472.702760539 6139425.63150323 5764333.9633416645 5725063.033247313 5480119.360741299 5528276.738775595 5682528.764163464 0.9736849495391158 1.214201664704432 1.2267835980498654 1.2255939198551145 1.0804037931529988 1.0143959146663895 1.0074850952540864 0.9643803996737071 0.9728550383483053 1.0 22.438101651105697 2.8873297603701724 2.580844834072026 0.9864564485157568 1.1680526455777858 0.5560921351622057 0.07032834012857274 0.20371383750823094 2.652489576370528 0.023377683029703247 0.025460181674350164 771.4890393644084 -2.8873297603701724 0.181596197062029 FFENLNPMGNS(ph)MEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FFENLNPMGNSMEK 14 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 FFENLNPMGNS(1)MEK 61.415 0.025473 0.0 888710.0 513410.0 463220.0 428840.0 462560.0 638060.0 501640.0 645080.0 897900.0 594110.0 True False 883925.2841049627 530498.5414871015 528437.3496195822 483131.1000300442 521464.2741920808 593952.4140316808 477373.7567491046 693219.1452498672 676624.576243578 556193.3911568384 1.5892408974268246 0.9538023103505533 0.9500964197371604 0.8686386924252545 0.9375592779113686 1.0678882983422486 0.8582873589278089 1.2463635064199992 1.2165275370069613 1.0 19.08522707672317 -0.23643178275185806 7.214751461694829 0.9999581387341739 1.0624038249721386 0.00760036440679035 0.21316297207228876 0.0 0.0 0.2014569946199108 0.047483869004400256 0.5801872988766169 0.23643178275185806 0.06244568623796465 FFEVILIDPFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 FFEVILIDPFHK 12 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 167.3 4.9592e-05 3036000000.0 775010.0 811930.0 782730.0 763670.0 744250.0 854050.0 903210.0 827790.0 1124520.0 916160.0 False True 770837.4322717065 838954.5992279508 892931.5803888778 860350.5436991507 839025.8259846413 795011.5337174514 859518.2817027337 889563.8932324488 847397.113796 857689.8844359629 0.8987367651871369 0.9781561079966183 1.041089088949779 1.003102122703636 0.978239152880303 0.9269218958321629 1.002131769652353 1.037162626463115 0.9879994263349257 1.0 19.71009658013324 4.700540231561337 3.7918976932329853 0.9983273516317251 0.8921354187634728 0.4863471413320237 0.030090824010722567 0.2038566254977814 5.515478246164737 0.007977741835075424 0.05605520947328276 50181.10629510236 -4.700540231561337 -0.10619193286825235 FFGQHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FFGQHDR 7 0 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 0 106.04 0.0077911 377520000.0 142210.0 148620.0 149440.0 150600.0 143450.0 158150.0 153280.0 127450.0 177950.0 143480.0 False True 141444.35716101638 153566.72685731298 170479.85304423448 169665.94455863396 161717.50720523606 147217.46274505573 145865.26081353714 136960.96617798661 134096.6069078346 134322.98356059182 1.0530167914057103 1.143264710078752 1.269178576333012 1.2631192373872433 1.2039451694600487 1.0959960748537672 1.0859292799116445 1.019639100825994 0.9983146841534002 1.0 17.03534665509141 2.2331946148843334 1.459119335971091 1.006962248919759 1.1914056253143015 0.6232413277057436 0.05994345079623419 0.29031468732632937 1.211372487500951 0.03826148260812715 0.022540307253561636 171.07817743091834 -2.2331946148843334 0.18444337639454256 FFHLAFEEEFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FFHLAFEEEFGR 12 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 ; 176.78 2.4122e-05 1667780000.0 993780.0 1209190.0 1126170.0 1102170.0 976650.0 1063030.0 1124860.0 894820.0 1341120.0 1060120.0 False True 988429.5988993366 1249437.1581792086 1284724.9471548814 1241704.608991965 1101020.5884419228 989545.2382034563 1070446.2244175079 961596.0122038922 1010618.9460873012 992462.2339856062 0.9959367369878902 1.258926652716671 1.2944824529952985 1.2511353746987752 1.1093828568371409 0.9970608495897767 1.0785762800451635 0.9688993487865437 1.0182946126108798 1.0 19.92065267908201 2.9888267945170375 3.513114551952987 1.0136069550764464 1.2103511549987902 0.5464965075483447 0.08015878064812239 0.17366839718347932 4.560218425016789 0.025003054541913306 0.028554689920613104 974.6008695255481 -2.9888267945170375 0.19674419992234382 FFIEEMIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FFIEEMIR 8 0 Q14376;Q14376-2;Q5QPP4;Q5QPP3;Q5QPP1 Q14376 GALE UDP-glucose 4-epimerase 0 109.01 0.0086081 17146000.0 79078.0 78776.0 76535.0 77455.0 51256.0 56554.0 78451.0 62935.0 96045.0 72949.0 False True 78652.25283439174 81398.01153890237 87310.46274585456 87260.79505835983 57783.14778188625 52644.55509379633 74656.02541807684 67631.52927745461 72375.99668706357 68293.33236521891 1.1516827501369447 1.1918881202575133 1.2784624753546348 1.277735205418104 0.846102332111628 0.7708593689976044 1.0931671194316823 0.9903094040831817 1.0597813019287359 1.0 16.05945711131228 3.24724386552458 24.999999890931857 0.9621382747873656 1.2264040578835784 0.6489159244422388 0.095447095165469 127.86225144357387 368126.7299853234 0.02873534871741679 0.03831570485491524 1767.0297666972667 -3.24724386552458 0.26426578309621285 FFIGQFSDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FFIGQFSDDR 10 0 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;P52701-4 P52701 MSH6 DNA mismatch repair protein Msh6 0 125.48 0.00094909 384220000.0 166400.0 200760.0 214590.0 184310.0 171080.0 187870.0 204010.0 182640.0 272720.0 193190.0 False True 165504.12088877812 207442.1752380175 244802.406750283 207643.62710226997 192866.0239293957 174882.98909841068 194141.25690611757 196269.52422712801 205511.8102607735 180860.44880171973 0.9150929458890318 1.1469736839226787 1.353543067996386 1.1480875364293333 1.066380323654056 0.9669498790757606 1.0734312459821318 1.0851987016923834 1.1363004549771933 1.0 17.464517423268045 3.238162955360616 5.824421558604615 1.0575500462389067 1.1571301571479866 0.12676260011496532 0.10772868324393371 0.3138011526026751 37.21873279428207 0.031911958208158314 0.04081870765712486 1730.4655402450708 -3.238162955360616 0.09958011090907992 FFMPAWNLEIIGTYAQTEMGHGTHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FFMPAWNLEIIGTYAQTEMGHGTHLR 26 0 Q15067-2;Q15067-3 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 143.31 1.5278e-07 38617000.0 29693.0 34272.0 29195.0 36313.0 41237.0 41019.0 36961.0 22515.0 48870.0 33330.0 False True 29533.136187202424 35412.72280213853 33305.40223251089 40910.22207674422 46488.28751915176 38183.45307833983 35173.05522526846 24195.183628853425 36826.643324449964 31202.850864751355 0.9464883934873034 1.134919464751309 1.0673833098415602 1.311105265799892 1.4898730798879587 1.2237168085648926 1.1272385134847434 0.7754158020280698 1.1802332897104473 1.0 14.929390227244133 1.973067132042126 12.90774920941831 0.9579936309155301 1.2031250033279701 0.2429994091019021 0.16362703989272467 2.464495310977415 1178.5973089772478 0.07058102889600831 0.046066170152933114 93.98685816273533 -1.973067132042126 0.24513137241243999 FFPASADR ddPTM_BT-474_Trastuzumab_2h_R1 2 FFPASADR 8 0 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 P4HB Protein disulfide-isomerase 0 ; 96.492 0.020712 475440000.0 360810.0 469260.0 586740.0 411460.0 347560.0 360440.0 451920.0 271420.0 656810.0 402990.0 False True 358867.4390497594 484879.0354263401 669347.8919644954 463550.7938120559 391819.7058504837 335523.6311844951 430058.90309795033 291674.7386428337 494947.9763030899 377270.8331829028 0.9512196742645587 1.2852279921444878 1.7741840425814 1.2286950197057087 1.0385634705573106 0.8893442102422786 1.1399208877868796 0.7731176464983402 1.3119168850859368 1.0 18.525241044108025 3.3164139963165526 3.9565378402129614 0.9980766303315758 1.3539361098885363 0.26890530135022406 0.23001312606809673 0.25866792367932684 7.8220309896246905 0.06576174255702455 0.08934845726531722 2072.1156762257306 -3.3164139963165526 0.3558594795569605 FFQGS(ph)QEFLASASASAER ddPTM_BT-474_Trastuzumab_2h_R1 11 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(0.999)QEFLAS(0.001)ASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(0.999)QEFLASASASAER;FFQGS(1)QEFLASASASAER 237.76 7.7127e-24 1224617000.0 494190.0 477875.0 469297.0 480949.0 416297.0 519073.0 482129.0 457748.7 544793.0 498957.0 True False 491529.33594967006 493780.7804934624 535369.9383973515 541837.0940871886 469309.9553643654 483190.70527641015 458806.5783583626 491908.23239480116 410536.0650021911 467113.13708142017 1.0522704178709366 1.0570903305752968 1.146124773416582 1.1599697184126587 1.0047029683144244 1.034419002418653 0.982217244466816 1.0530815627843477 0.8788792958538278 1.0 18.833412494474725 3.1806159072213354 10.45148057274054 0.9998849834746156 1.103488440794555 0.5067004916207487 0.05364941524745247 0.4131846905150237 72.28557431331355 0.01566823917067399 0.018750041877775906 1515.7092716713084 -3.1806159072213354 0.10360345731993947 FFSDCK ddPTM_BT-474_Trastuzumab_2h_R1 5 FFSDCK 6 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;E7EN40;D6R9T0;D6RFM3;D6RDU3;D6RJ04;D6RIH9;D6RAM1;D6RDL0;D6RF17;P55795;E7EQJ0 P31943;P55795;E7EQJ0 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;; 103.29 0.080996 3938481000.0 6148390.0 6237060.0 5438670.0 5062490.0 4938530.0 6027530.0 5691660.0 5597420.0 7949290.0 6042540.0 False True 6115287.751390341 6444656.771717613 6204387.462232915 5703400.714931212 5567422.522539378 5610861.038379424 5416332.661547348 6015127.903522844 5990293.994528694 5656899.923921241 1.0810316310406558 1.1392559278740635 1.0967822563019936 1.0082201897921748 0.9841826083923649 0.9918614636707407 0.9574736577260965 1.0633258470928166 1.0589358261753288 1.0 22.431580217848794 3.778452587137346 4.657345559270585 1.009887611755847 1.1111668124505545 0.6437867658593821 0.0329504489522288 0.13492190825968953 6.9962619658153296 0.009340373927231783 0.016890953940734015 6004.164565734489 -3.778452587137346 0.10127920069470742 FFSGYGR ddPTM_BT-474_Trastuzumab_2h_R1 3 FFSGYGR 7 0 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;; 179.23 0.0016381 3058098000.0 1305675.0 1530377.0 1473942.0 1447862.0 1419563.0 1523474.0 1554862.0 1306806.0 1907744.0 1541275.0 False True 1298645.3908741313 1581314.6733125688 1681460.2218664684 1631161.1807473658 1600335.933640894 1418159.8282520445 1479647.3849103493 1404326.4995464103 1437606.0536599031 1442909.5099480865 0.9000185957058766 1.095920889293648 1.1653261762249836 1.1304667198472151 1.1091034625577258 0.9828473777978409 1.02546096945718 0.9732602702139899 0.9963244706257608 1.0 20.460549395388437 2.735341925584027 24.972349650544984 0.9947234079100086 1.088567852190671 0.27924289027419946 0.06726876512677646 354.9925750735787 2754215.3924523415 0.021973010923488145 0.021486271036669374 543.6782078204649 -2.735341925584027 0.09384444428066241 FFTESR ddPTM_BT-474_Trastuzumab_2h_R1 6 FFTESR 6 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;;;; 126.68 0.040453 2720920000.0 2529210.0 3151710.0 2871000.0 2997680.0 2928480.0 2878900.0 2925420.0 2629830.0 3246390.0 2919450.0 False True 2515593.0143816485 3256612.7621010737 3275211.8448206508 3377185.9806409436 3301404.569539138 2679888.41920165 2783906.258410351 2826081.268606153 2446360.683897305 2733128.201533104 0.9204079826810054 1.1915331158905498 1.198338169056056 1.2356485798019157 1.207921592440219 0.9805205689577278 1.0185787321826922 1.0340097720337116 0.8950771802526711 1.0 21.382121702576498 2.7313572682066654 24.84578290415574 0.9943028416806734 1.1603926779292908 0.4565221947560435 0.08953144412629886 484.1158067008039 1669808.3581676492 0.028957945292727476 0.027822349254214684 538.712767194288 -2.7313572682066654 0.1660898362486174 FFTGDVFGYHGYTFANLGEHEFVEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FFTGDVFGYHGYTFANLGEHEFVEEK 26 0 Q9UBE0;M0QX65;B3KNJ4;Q9UBE0-2;Q9UBE0-3;A0A590UK93;A0A590UKC5;M0QYM8;M0R054 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 327.05 4.230699999999998e-95 343440000.0 514450.0 521400.0 477670.0 459780.0 462250.0 586830.0 568830.0 456230.0 790790.0 551910.0 False True 511680.25836076884 538754.4838070445 544921.7840179303 517988.10085769504 521114.7975295954 546263.8233492328 541313.5197583797 490276.19928899774 595910.4005431102 516686.6312860769 0.9903106203602621 1.0427103222431724 1.0546465710977921 1.0025188760320325 1.008570313175118 1.0572439662112716 1.0476631036707962 0.9488850099888566 1.1533304027236753 1.0 18.97893003049145 FFTVEPQHIPCVLMAFLDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FFTVEPQHIPCVLMAFLDHR 20 0 O43592 O43592 XPOT Exportin-T 0 ; 171.85 4.1715e-12 303600000.0 77636.0 103272.0 91351.0 90104.0 86906.0 79275.0 85565.0 71048.0 101930.0 85620.0 False True 77218.01640217043 106709.34609075771 104212.42676287379 101511.1571614287 97972.96396778134 73794.90584327724 81425.89405995763 76349.96253443375 76810.71729202344 80155.65829703011 0.9633507857427387 1.3312765231785446 1.3001256427424914 1.2664253443626179 1.2222838168794803 0.9206449976347018 1.0158471128540976 0.952521183863356 0.95826943379828 1.0 16.290516745330805 2.7466102393579606 23.847010867744622 0.9692734323402605 1.2304563548983867 0.6186748590356588 0.0967492353720362 199.97524219319973 592426.1813200433 0.028957921199925626 0.030191850854291206 557.9692165634114 -2.7466102393579606 0.26118292255812614 FFWHLTLPER ddPTM_BT-474_Trastuzumab_2h_R1 1 FFWHLTLPER 10 0 P55212;D6RBM3;D6RHU3 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 0 138.11 7.3272e-05 325600000.0 171280.0 222320.0 230860.0 203150.0 155770.0 186610.0 205540.0 169960.0 263640.0 197820.0 False True 170357.84751099715 229719.78680472204 263363.0813289079 228868.76917056143 175606.386178875 173710.0899326895 195597.24496095025 182643.27823939256 198669.45459500712 185194.95823777746 0.9198838301649093 1.2404213861469047 1.4220855893429238 1.2358261334345282 0.9482244433102147 0.9379849839629965 1.0561693839948763 0.9862216551537611 1.0727584405398842 1.0 17.49868529752543 3.2445764247001434 24.999532001315774 0.9996304449516101 1.2226541731439076 0.40200255854169586 0.1212843760951402 140.26967003502304 582906.4875741163 0.034744518092531484 0.04585031855443033 1756.2099149511357 -3.2445764247001434 0.22302372819229743 FGAPPHAGGGIGLER ddPTM_BT-474_Trastuzumab_2h_R1 4 FGAPPHAGGGIGLER 15 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ;;; 189.3 2.637e-07 3039330000.0 2954500.0 3422080.0 3145520.0 3389170.0 3214400.0 3485330.0 3559630.0 3010890.0 3676040.0 3336400.0 False True 2938593.3002758096 3535981.864108953 3588381.8746500365 3818238.5745005696 3623734.786758527 3244397.3406843203 3387437.0977928727 3235577.900789625 2770129.1984123397 3123468.0955642476 0.9408110505271414 1.1320691474744153 1.1488453747121765 1.2224355932826692 1.1601638550125506 1.0387163375517774 1.084511509050948 1.0358927326277443 0.8868760985093148 1.0 21.57471736300019 1.6082663673373938 1.7608018521536863 0.9450827123716236 1.1163116622694014 0.39642112535000606 0.07717009734835681 0.3284292281763509 2.0721508842796186 0.06344598004995007 0.022728940366053208 40.57573236889064 -1.6082663673373938 0.17122894989777782 FGAQQDTIEVPEKDLVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FGAQQDTIEVPEKDLVDK 18 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 144.27 9.0701e-08 181390000.0 294670.0 241490.0 224350.0 224800.0 213920.0 348520.0 348150.0 296870.0 462730.0 309590.0 False True 293083.5294609147 249527.8486662121 255936.52991484245 253259.6569507369 241161.44399682214 324427.6327278337 331308.65443784575 319023.94687531516 348696.3917643288 289831.7011466662 1.011219712341277 0.8609404964294822 0.8830522296293895 0.8738162731984159 0.8320740727902122 1.1193655885270486 1.1431070277236188 1.1007213690329773 1.2030995587603952 1.0 18.14485587673605 2.729531636237447 24.558074282957534 1.1202969393404913 0.8889509637918778 0.7460937550925681 0.06439337809929359 232.12006804121572 631345.8599271269 0.019574506579977176 0.01871069706927745 536.4529480010726 -2.729531636237447 -0.23134597554861358 FGAVFLWDSGSSVGEITGHNK ddPTM_BT-474_Trastuzumab_2h_R1 4 FGAVFLWDSGSSVGEITGHNK 21 0 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 ;;; 261.31 1.2313999999999999e-36 1092783000.0 986025.0 1061452.0 1039021.0 957392.0 971066.0 1200444.0 1318977.0 1049816.0 1305400.0 1274702.0 False True 980716.3509576755 1096781.788158715 1185306.1254675698 1078597.7290363866 1094725.4991408843 1117460.1318212186 1255173.0435285557 1128158.6007776333 983701.6614638228 1193349.427032712 0.8218182610572388 0.9190784889266554 0.9932598940570643 0.9038406560585881 0.917355364943646 0.9364064761817554 1.0518068011727038 0.9453715527251921 0.8243198841682251 1.0 20.186585112637566 2.474752191379239 24.99347485416315 0.9588775060696295 0.9167999362912665 0.08733104577884043 0.06607281195926944 210.65403645260898 2222338.3406512486 0.023221738469479714 0.019542471354343657 298.36796441990055 -2.474752191379239 -0.042077569778362967 FGAVWTGDNTAEWDHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FGAVWTGDNTAEWDHLK 17 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 242.9 1.9825999999999998e-20 2755240000.0 885990.0 1072180.0 931260.0 1049360.0 893040.0 1085590.0 1296860.0 1102900.0 1273190.0 1016810.0 False True 881219.9282827433 1107866.863153504 1062373.3133429724 1182208.8684066955 1006763.3505372175 1010545.7185039835 1234125.9273137003 1185203.998412722 959429.3843719346 951916.3152651621 0.9257325608893194 1.1638280018815528 1.1160364585694087 1.2419252086013297 1.0576174968245788 1.061590921700391 1.2964647285932136 1.245071630149102 1.0078925731036343 1.0 19.860475223538664 4.74075152954948 24.141820597319708 1.1501713953901438 0.9257324376643795 0.26322716076256925 0.0996923724865981 151.6295813481012 1670628.0133009325 0.023810912409360126 0.15697824136096933 55049.26560368664 -4.74075152954948 -0.22443895772576428 FGDES(ph)PLLTMR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGDESPLLTMR 11 0 H0YJ41;Q9P203-5;Q9P203 H0YJ41 BTBD7 BTB/POZ domain-containing protein 7 1 FGDES(1)PLLTMR 145.81 3.7834e-05 43148000.0 17714.0 19069.0 18201.0 18280.0 17796.0 19655.0 18635.0 17966.0 18332.0 16321.0 True False 17618.629792210428 19703.700137546082 20763.542594071954 20594.246125709375 20062.215114844064 18296.296112893284 17733.55385738691 19306.71414949948 13814.32423621479 15279.379806888912 1.1530984905726889 1.2895615127429718 1.3589257454488064 1.3478456839212927 1.3130254871862501 1.1974501808407272 1.1606200043140167 1.2635796997987307 0.9041155080120737 1.0 13.899298364828573 1.2438325584652559 24.996513506228972 0.95205769433277 1.2623571732776417 0.7488724932522354 0.07144256096103535 58.5648764174736 277691.4711000659 0.05491201226896114 0.01872794846609038 17.53204426390591 -1.2438325584652559 0.31029947894487175 FGDILHVINASDDEWWQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FGDILHVINASDDEWWQAR 19 0 A0A590UJD9;A0A0C4DFT3;A0A590UJ18;A0A590UK02;E7EQD7;A0A590UK70;A0A590UJ08;Q12959-4;Q12959-2;A0A590UJC5;A0A590UJL2;A0A590UJ25;Q12959;Q12959-3;Q12959-5;Q12959-7;Q12959-6;A0A590UKA8;A0A590UJR5;A0A590UJ68;A0A590UJS9;A0A590UK48;A0A590UJ81;C9JUA9;Q12959-8;A0A590UJX2;A0A590UJ64;A0A590UK81;A0A590UJ29;Q12959-9;A0A590UJR4 A0A590UJD9;A0A590UJ08;Q12959 DLG1 Disks large homolog 1 0 ; 200.26 6.553e-16 470770000.0 425650.0 475700.0 445220.0 432680.0 439860.0 507790.0 490380.0 432570.0 541730.0 497070.0 False True 423358.34769416123 491533.38693327736 507903.1060783871 487457.2436363199 495873.56374552165 472687.6725090861 466658.445966482 464850.5699459527 408227.90031009354 465346.56703696214 0.9097700030105395 1.0562738005419414 1.0914512796610891 1.0475144293857046 1.065600562829842 1.0157755659805714 1.0028191438864007 0.9989341339849832 0.8772556396180919 1.0 18.82794603864726 1.5503964832227197 2.6938182679044167 0.9388433877428444 1.0332439328089271 0.27556925566531243 0.05458494529782924 0.28135866974278534 4.475067160841431 0.03891429133683201 0.014342638605537517 35.51374591821143 -1.5503964832227197 0.09440054506608275 FGDVVHFMELWGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FGDVVHFMELWGK 13 0 Q9NV88-3;Q9NV88-2;Q9NV88;G3XAN1 Q9NV88-3 INTS9 Integrator complex subunit 9 0 134.98 8.932100000000001e-05 47902000.0 217310.0 233170.0 220740.0 219690.0 202750.0 259840.0 241870.0 220790.0 319980.0 259790.0 False True 216140.02710541064 240930.92249575854 251818.2732935251 247502.73147467687 228569.01070659864 241877.8723975677 230169.82406687277 237266.470948903 241125.21651232874 243209.9797825913 0.8886971961373507 0.9906292608186964 1.0353944912894975 1.0176503928659626 0.9398011171701077 0.9945228095236289 0.9463831388523805 0.9755622329355017 0.991428134354823 1.0 17.89184290341343 2.9923941725927903 0.0025680304517667783 1.954621861363851 9.064837932791037e-05 0.048834418993240813 0.03949910044082359 265477.8154524089 223.19716092061708 84210.45738251043 85662.32077597032 982.6393975864157 -2.9923941725927903 -1.9545312129845231 FGDYNK ddPTM_BT-474_Trastuzumab_2h_R1 2 FGDYNK 6 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 112.66 0.062352 513930000.0 1355280.0 1435110.0 1320570.0 1142850.0 1329370.0 1726850.0 1660560.0 1377500.0 2085420.0 1565240.0 False True 1347983.3230657636 1482876.768807687 1506494.777399793 1287534.6928209506 1498657.3897066903 1607476.9240676528 1580232.3688447762 1480296.04480327 1571496.1841963278 1465345.0431306178 0.9199084743794416 1.0119642303764946 1.0280819418348468 0.878656326615207 1.0227334488434907 1.096995503962247 1.0784029169462428 1.0102030588240911 1.0724410551380614 1.0 20.482808983733864 3.0115913205971987 24.94208628814349 1.051848436453359 0.9660792914206338 0.4458089680459222 0.0482849120603815 210.550937655976 453057.8782771023 0.013847859453831664 0.016539274872184005 1027.04937017429 -3.0115913205971987 -0.08576914503272515 FGEEIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGEEIAR 7 0 Q8WUM4;Q8WUM4-2;F8WDK9 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 97.473 0.049765 0.0 64463.0 102900.0 91712.0 85364.0 91960.0 88434.0 107170.0 75029.0 111640.0 82379.0 False True 64115.93837051257 106324.96429563653 104624.25242500559 96171.073647432 103670.56091037656 82320.76573124409 101985.77767084277 80628.04496954223 84127.81789935744 77121.50169178983 0.8313626804979369 1.3786682308204539 1.3566158610750136 1.2470072747256962 1.344249769988764 1.0674165300908263 1.3224039396745815 1.0454677774787897 1.090847766885658 1.0 16.234845523210236 1.6577272501554956 7.095687779605202 1.0500910396106105 1.2318013355842055 0.20287464578990866 0.15814097750854908 0.19175303580274528 18.70534496543775 0.07677705057838048 0.0390867560722669 45.470240383298474 -1.6577272501554956 0.181710295973595 FGESEEVEMEVES(ph)DEEDDKQEK ddPTM_BT-474_Trastuzumab_2h_R1 6 FGESEEVEMEVESDEEDDKQEK 22 1 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGES(0.001)EEVEMEVES(0.999)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK 299.48 6.5382e-56 4948620000.0 4762020.0 2581790.0 2487280.0 1891830.0 2239690.0 3647250.0 3488260.0 3591360.0 6644970.0 3340110.0 True False 4736381.813430166 2667723.319424989 2837467.40417468 2131335.484026302 2524901.2458173227 3395124.192203003 3319519.53735275 3859365.5197565677 5007406.18153612 3126941.3201879635 1.5147012138831748 0.8531414715721719 0.9074258560132228 0.6816039272199024 0.8074667821606414 1.085765239751579 1.0615867704077064 1.2342302347792626 1.6013751678701538 1.0 21.57632071539616 1.8960500124426818 1.8636290810831695 1.318123229346554 0.9424613498261594 0.2241217331429164 0.2499659167259038 0.4478554097231186 2.90180847710204 0.15920894834488228 0.07406058706456002 78.71364294582084 -1.8960500124426818 -0.37566187952039454 FGEVVDCTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FGEVVDCTLK 10 0 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RD83;D6RF44;Q14103-2;Q14103-4;D6RBQ9 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 98.044 0.011861 0.0 73651.0 70885.0 56974.0 69737.0 78250.0 89642.0 100770.0 81913.0 95418.0 111920.0 False True 73254.47119939538 73244.36437411269 64995.443973114445 78565.69704970428 88214.6736759131 83445.25953457026 95895.37012121706 88025.76400578594 71903.5124356941 104777.16978046713 0.699145351538706 0.6990488913527336 0.6203206682266301 0.7498360302565715 0.8419264794109599 0.7964068862463812 0.9152315368141788 0.8401235134545117 0.6862517148186853 1.0 16.676964872298637 3.413627637195693 3.298045304697208 0.8415627106764328 0.6754476347063123 0.5000569006666671 0.07824512522505608 0.2007314706100474 4.429421933307226 0.02148485195327937 0.030953489064845945 2591.956073662997 -3.413627637195693 -0.16611507597012054 FGEYHKDDPSSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 FGEYHKDDPSSFR 13 1 F5H365;Q15436;Q15436-2 F5H365 SEC23A Protein transport protein Sec23A 0 ;;; 111.74 0.00057427 2026090000.0 3213480.0 3244120.0 3049610.0 2927480.0 2995650.0 3687650.0 3760300.0 3162850.0 4979970.0 3697160.0 False True 3196178.980731191 3352098.5730880513 3478968.5803146963 3298098.6678387094 3377128.270891355 3432731.4352943734 3578399.9232590287 3398877.9276268715 3752723.1216791705 3461204.0835020775 0.9234297959966776 0.9684775853194902 1.0051324615318968 0.9528761056186157 0.9757090854562803 0.9917737736577222 1.0338598467266256 0.9819929266314329 1.0842247469794186 1.0 21.722842579182327 2.5337027522479887 0.8117507335736878 1.0275802021961615 0.9604447397594257 0.4427706463557758 0.03135644460150906 0.6441846491912906 0.8687885075743002 0.02192893756236069 0.01692675930582583 341.7454587878721 -2.5337027522479887 -0.06713546243673585 FGGAFCR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGGAFCR 7 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 0 109.88 0.016119 248280000.0 672820.0 628040.0 606120.0 568340.0 617630.0 755140.0 668400.0 678080.0 1053800.0 707780.0 False True 669197.611877329 648943.931741802 691456.4275105161 640291.7857267865 696281.5195201802 702938.9492083561 636066.9384640409 728681.7728204718 794105.1101965505 662608.8744390564 1.0099436299337983 0.9793770605489963 1.0435363216284739 0.9663193633934305 1.050818282670346 1.0608655819821942 0.9599432832868635 1.0997162895491712 1.1984522707589973 1.0 19.33779800025761 1.6119796948928535 6.556106624593936 1.1149786624523652 1.0122903739040963 0.34275553104477396 0.05567269610195566 0.11866899204351727 10.934768325870953 0.027549138850431466 0.013292146475607695 40.92415255074265 -1.6119796948928535 -0.10268828854826895 FGHEFLEFEFRPDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 FGHEFLEFEFRPDGK 15 1 P61326;Q96A72;F5H6N1;P61326-2 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 0 ;;; 230.26 2.1140999999999998e-13 3336487000.0 6408810.0 6447700.0 6148060.0 5612230.0 5707410.0 6820500.0 6956560.0 5762890.0 8917140.0 6706430.0 False True 6374305.679045731 6662307.796783044 7013653.408104502 6322737.742565089 6434214.833030585 6349014.888730025 6620044.616160108 6192946.115162479 6719630.330554236 6278419.895736416 1.0152722794750364 1.0611440310494875 1.1171048646917312 1.0070587580258479 1.0248143545480237 1.0112440700313066 1.0544125315122177 0.9863861000071082 1.070274120263514 1.0 22.58197008776938 3.6868327180752947 24.99996402122762 1.0210081580672783 1.0641710671212845 0.2613344460077074 0.03269506900626269 418.769266329955 202390.19435709112 0.008341664475217243 0.012922875353947356 4862.198870207698 -3.6868327180752947 0.043162909054006215 FGIDDQDYLVSLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 FGIDDQDYLVSLTR 14 0 Q8TBX8;Q8TBX8-3;F8VNT5;F8VU68 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 ;;; 281.17 6.115699999999999e-33 189366000.0 296224.0 353076.0 336411.0 325015.0 294552.0 335996.0 356030.0 285445.0 366352.0 329276.0 False True 294629.16289758054 364827.9212210511 383774.744663169 366161.8656754612 332061.45125351485 312769.38736950833 338807.46873332263 306746.35536034044 276069.4584652936 308261.32377263333 0.955777258372161 1.183502090875792 1.2449656024517455 1.1878294078355869 1.0772076340606256 1.014624162193633 1.0990917205793207 0.9950854411648141 0.8955695611977461 1.0 18.233794366471443 2.2150696432277064 0.9191361345012946 0.9584236678058791 1.1456524718054522 0.4035707563242177 0.08285988411694853 0.5805262713085767 0.9294544354175934 0.065247649454307 0.03675226920177827 164.08528783814177 -2.2150696432277064 0.1872288039995731 FGIDDQDYQNSVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 FGIDDQDYQNSVTR 14 0 P78356;P78356-2;A0A087WT35 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ; 322.7 5.685899999999998e-56 792840000.0 700440.0 768890.0 691740.0 764010.0 610420.0 761030.0 788630.0 692000.0 931030.0 780800.0 False True 696668.9088662002 794482.0388461798 789130.9792881343 860733.5876642901 688153.3687571998 708421.7873719239 750480.9540408391 743640.5539047994 701590.1316628327 730968.675523489 0.9530762838329225 1.0868893092815575 1.0795688046727745 1.1775245868749011 0.9414266189510424 0.9691547819947032 1.02669372733842 1.017335733808614 0.9598087512578886 1.0 19.479450057584135 3.213309969154818 24.999917073386307 0.9907178989991005 1.075545482489312 0.3720644885195401 0.056109050618157484 254.28527385392306 251759.56497822833 0.01644320517906022 0.0196605521467882 1634.2179226874237 -3.213309969154818 0.08482758349021158 FGIHVYQFPECDS(ph)DEDEDFKQQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGIHVYQFPECDSDEDEDFKQQDR 24 1 E7EQM7;C9JM82;E7EPG2;B4DJ62;E7EX32;G3XAH0;Q99719-2;Q99719;H7C299 E7EQM7 SEPT5 Septin-5 1 FGIHVYQFPECDS(1)DEDEDFKQQDR 136.01 1.4394e-05 281840000.0 246530.0 178920.0 139850.0 143230.0 164340.0 256820.0 213330.0 188190.0 351480.0 207330.0 True False 245202.70987205775 184875.244040576 159539.6644020088 161362.90331429706 185267.72488050547 239066.63788925193 203010.4129002604 202233.6934094569 264862.46359070326 194098.02189585683 1.2632931931867966 0.952483916295503 0.8219540974385082 0.8313474899856332 0.9545059917195382 1.2316799293169665 1.0459169594689919 1.0419152726758094 1.364580952467486 1.0 17.56642588967757 2.7993313284101213 11.212492215646009 1.1236344360349546 0.9485805233856691 0.2408119738707014 0.1505335133124563 1.383551458115607 252.78880322589657 0.04661953575874065 0.04944599052598479 629.9866238325588 -2.7993313284101213 -0.1750539126492855 FGINIPS(ph)PEHSNTIDVCNTVDIK ddPTM_BT-474_Trastuzumab_2h_R1 3 FGINIPSPEHSNTIDVCNTVDIK 23 0 C9IZ03;Q9HCI7-2;Q9HCI7 C9IZ03 MSL2 E3 ubiquitin-protein ligase MSL2 1 FGINIPS(0.561)PEHS(0.423)NT(0.016)IDVCNTVDIK;FGINIPS(0.999)PEHS(0.001)NTIDVCNTVDIK;FGINIPS(0.998)PEHS(0.002)NTIDVCNTVDIK 281.98 3.3273999999999993e-52 889530000.0 1037883.0 1001844.0 946486.0 871753.0 871856.0 1244072.0 1080434.0 1056411.0 1561780.0 1174398.0 True False 1032295.1532476407 1035189.7719125123 1079743.001796209 982116.8404171501 982881.6937046237 1158072.2308704837 1028169.2797613082 1135245.7531663647 1176900.245779815 1099446.9141872872 0.9389222343770138 0.9415550296739211 0.982078341267033 0.8932826385193252 0.8939783094767894 1.0533225533008408 0.9351695534307197 1.032560770799507 1.070447541025463 1.0 20.068346515956645 2.197928267635773 1.1266748962440667 1.033791539848245 0.9357919312996099 0.42182059785587345 0.04592244671040085 0.48587072439516965 1.1738622636944303 0.03168628185391832 0.017270055879976546 157.7350717365283 -2.197928267635773 -0.09799960854863499 FGITESDWYR ddPTM_BT-474_Trastuzumab_2h_R1 2 FGITESDWYR 10 0 Q8N9N5-6;Q8N9N5-2;Q8N9N5-4;Q8N9N5-7;Q8N9N5;Q8N9N5-3;Q8N9N5-5 Q8N9N5-6 BANP Protein BANP 0 ; 105.78 0.006803399999999999 45660000.0 93575.0 130498.0 126768.0 119613.0 90490.0 105435.0 125674.0 97686.0 142740.0 120801.0 False True 93071.20259715983 134841.5470422933 144615.8325127912 134755.99353580267 102013.36512374907 98146.52661729339 119594.66849869839 104975.8253594571 107563.63961800677 113091.3767570605 0.8229734685880834 1.19232386154389 1.278752073409192 1.1915673626052095 0.9020437105730097 0.86785155006229 1.0575047534845037 0.9282389901836903 0.9511214975220591 1.0 16.787129402136635 3.2374269034125396 24.997627755037993 0.949772157112696 1.1377090277486372 0.3158246546477431 0.1218272513368268 34.02497504648399 750234.8010619837 0.03497704420604709 0.04411000080127843 1727.5351926667433 -3.2374269034125396 0.18793687063594122 FGKPNKR ddPTM_BT-474_Trastuzumab_2h_R1 2 FGKPNKR 7 2 P51858;P51858-2;P51858-3;Q5TGJ6 P51858 HDGF;HDGFL1 Hepatoma-derived growth factor;Hepatoma-derived growth factor-like protein 1 0 ; 90.986 0.0094131 2745300000.0 5736300.0 6529800.0 6158800.0 5655300.0 5070500.0 6661200.0 7397200.0 6505800.0 12067000.0 7598700.0 False True 5705416.398162845 6747140.445652548 7025905.506750745 6371260.400149023 5716198.119791905 6200726.922778154 7039369.17595183 6991295.831783017 9093249.539515812 7113744.4604256265 0.8020271784996731 0.9484653944469712 0.9876522197046103 0.895626829947701 0.8035427968479341 0.8716544370230519 0.9895448473180963 0.9827870358116176 1.2782648561671484 1.0 22.762177720235293 1.572213001752873 2.3988748279324223 1.134954385583314 0.8967066396106742 0.5178839982946417 0.0895684405357776 0.19692322252664393 2.4800258917925633 0.06453308012015226 0.023616359676601202 37.34332649745249 -1.572213001752873 -0.23824774597263976 FGLSVGHHLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FGLSVGHHLGK 11 0 P15559-2;P15559;B4DLR8;P15559-3;H3BNV2 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 ; 123.79 0.00020967 5747400000.0 6675100.0 9572200.0 9898200.0 10354600.0 9583700.0 11436000.0 11297100.0 8221900.0 11956900.0 10757000.0 False True 6639162.003273327 9890804.8904829 11291780.52330328 11665491.298318943 10804127.387959715 10645456.237448351 10750616.113887075 8835459.927962236 9010282.209251398 10070479.05046897 0.659269729870909 0.9821583303946497 1.1212754097112625 1.1583849427476536 1.072851384111323 1.057095316329823 1.0675377069958187 0.8773624257279776 0.8947223030896232 1.0 23.263628977873747 -0.16786251551746822 8.099575851590192 0.9999940452970258 0.9960680779917697 0.0 0.1395493298690717 0.0 0.0 0.13914261618903984 0.032796229153102395 0.6794186819582411 0.16786251551746822 -0.003925967305256184 FGNDVQHFK ddPTM_BT-474_Trastuzumab_2h_R1 4 FGNDVQHFK 9 0 P62993;J3KT38 P62993 GRB2 Growth factor receptor-bound protein 2 0 ;;; 97.965 0.0063338 1660270000.0 3105690.0 2938550.0 2996440.0 3251980.0 2777690.0 3588490.0 3675900.0 3179010.0 4244930.0 3493510.0 False True 3088969.310114597 3036357.8603590117 3418312.7064766213 3663680.3345669825 3131412.356841491 3340426.1326968423 3498082.6736983396 3416243.868885694 3198823.8806477915 3270551.2008556086 0.9444797284648814 0.9283933116731732 1.0451793892058185 1.1202027149455809 0.957457065959488 1.0213648793582422 1.0695697632812495 1.0445468237867583 0.9780687364903345 1.0 21.64110236948991 4.239630365657761 24.989536415153022 1.034130487778339 0.9364364879962762 0.4142917512018398 0.044015819642831175 23.81337971586278 556214.1210288999 0.010780636976099918 0.026335376602137108 17363.223904696097 -4.239630365657761 -0.09769399978206283 FGNQADHFLGSLAFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 FGNQADHFLGSLAFAK 16 0 Q9H488;Q9H488-2 Q9H488 POFUT1 GDP-fucose protein O-fucosyltransferase 1 0 73.983 0.013621 0.0 75102.0 83636.0 92345.0 84479.0 83182.0 89931.0 96227.0 82269.0 123530.0 99915.0 False True 74697.65917661662 86419.77370097039 105346.37332287103 95174.03273817306 93774.73464165872 83714.2816448031 91572.13238716232 88408.33053351738 93087.68671719477 93538.33915846473 0.7985779932447825 0.9238968157705401 1.1262373725109887 1.0174868785828801 1.002527257649866 0.8949729319330916 0.9789796698445604 0.9451560860380841 0.9951821633212183 1.0 16.513270192429474 4.619804844628238 3.926289155067387 0.989247158905944 0.7994530772332274 0.5279249323464386 0.05626753873108382 0.18843296666568973 4.561762370616221 0.014394195245328603 0.07670960690296415 41668.21003551336 -4.619804844628238 -0.1897940816727165 FGNWLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FGNWLK 6 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 106.75 0.074111 381640000.0 647080.0 543940.0 479840.0 447580.0 420050.0 482390.0 451100.0 424090.0 651200.0 501050.0 False True 643596.1931773473 562044.7140813262 547397.3011559523 504243.5821085891 473540.8776685916 449043.5147239174 429278.5696306537 455737.7492853847 490720.48563294136 469072.5600295127 1.3720610583932986 1.1982042054345792 1.1669778789053693 1.0749799179829738 1.0095258559545623 0.9573007525651573 0.9151645314823889 0.9715719658739174 1.0461504838442621 1.0 18.839451582460594 4.411622146511418 0.7313254500370514 0.9673497618194971 1.4877902230619142 0.9121357232915118 0.03894066984945147 0.5240687384351714 0.28800721489091413 0.016612151467266825 0.2084641021199033 25800.144985310155 -4.411622146511418 0.5204404612424172 FGPDTQHLVLNENCASVHNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGPDTQHLVLNENCASVHNLR 21 0 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-4;Q9BQ52-2;H7C2I4 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 72.92699999999998 0.0087597 203420000.0 158280.0 158010.0 169310.0 158830.0 171440.0 206740.0 191110.0 186600.0 274810.0 206230.0 False True 157427.8380665612 163269.26733093776 193147.37633109879 178937.86171479343 193271.86779550856 192448.55041361236 181865.27918890328 200525.03953560058 207086.75776533847 193068.2248376141 0.8154000390223232 0.8456558165812128 1.000409966443475 0.9268115551655097 1.0010547720012744 0.9967903862765458 0.9419741614233341 1.0386226925961444 1.072609218526327 1.0 17.558751219557497 6.304126305031382 0.4394877045386057 1.0210086086285652 1.3617455383497203e-12 0.7241451485006158 0.040815225902856064 9.54570991437492 0.48437216047043047 0.025866101016952272 6.8085146249837365 2014309.9825941524 -6.304126305031382 -1.0210086086272034 FGQAATMEGIGAIGGT(ph)PPAFNR ddPTM_BT-474_Trastuzumab_2h_R1 4 FGQAATMEGIGAIGGTPPAFNR 22 0 Q15233;Q15233-2 Q15233 NONO Non-POU domain-containing octamer-binding protein 1 FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR 224.49 7.6688e-25 1201280000.0 716420.0 736270.0 664810.0 705470.0 763130.0 791760.0 752770.0 735630.0 884810.0 838260.0 True False 712562.8743217447 760776.3018653865 758409.4693678907 794782.4296665306 860310.082074114 737027.4948025639 716355.6392393418 790526.446053451 666760.4313465644 784761.5291295075 0.9079992429192486 0.9694362855799947 0.9664202961237822 1.0127693575246213 1.0962694400022492 0.939173834910215 0.9128322587805183 1.0073460748392422 0.8496344514825604 1.0 19.581894793396526 -0.28520807672482823 7.608798013529298 1.000000000000001 0.9682590699575178 0.022703855339353263 0.06443718691409836 0.0 0.0 0.06132414247681529 0.014454238998602034 0.5185515339137724 0.28520807672482823 -0.03174093004248335 FGQLGLNDENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGQLGLNDENDR 12 0 Q5GLZ8-6;Q5GLZ8-3;Q5GLZ8-2;Q5GLZ8;H0Y6K7 Q5GLZ8-6 HERC4 Probable E3 ubiquitin-protein ligase HERC4 0 123.67 0.00047751 0.0 92785.0 93391.0 87221.0 94684.0 87775.0 103440.0 100960.0 84002.0 116850.0 95269.0 False True 92285.45586938268 96499.46297894839 99500.95866147749 106670.98469183064 98952.6259668148 96289.43627156847 96076.17909534666 90270.65579351304 88053.88320978056 89188.85085610564 1.0347196424615113 1.0819677801952785 1.1156210412667955 1.1960125471728535 1.1094730453076664 1.0796129263613754 1.0772218519818448 1.0121293740980333 0.9872745569044701 1.0 16.44457575539106 1.8331975447023596 1.5709946355582818 0.9904676305316255 1.1088864623154924 0.5971267520574968 0.038157359958801075 0.27349260737658787 1.2796142016550007 0.030037886063129807 0.012715252878370583 68.10790862545186 -1.8331975447023596 0.11841883178386692 FGSTGS(ph)TPPVS(ph)PTPSER ddPTM_BT-474_Trastuzumab_2h_R1 1 FGSTGSTPPVSPTPSER 17 0 E7ER32;A0A087X287;A0A087WU73;A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6 E7ER32 MKL1;mkl1 MKL/myocardin-like protein 1 2 FGS(0.002)T(0.007)GS(0.496)T(0.496)PPVS(0.998)PT(0.002)PSER 116.78 0.0010804 0.0 211490.0 239670.0 224210.0 226090.0 243940.0 250140.0 257040.0 225220.0 266180.0 270040.0 True False 210351.3613387478 247647.27106642534 255776.81913174424 254712.97081847012 275004.3130543411 232848.4105662237 244605.9932118448 242027.06004398724 200583.50562926312 252805.81600712426 0.8320669384157678 0.9795948328160553 1.011752115404403 1.0075439514860374 1.0878084903180838 0.9210563832900974 0.9675647383244996 0.9573634968792282 0.793429157593473 1.0 17.94767012872761 -0.7385747858190231 7.527989308684559 1.0000092347361735 0.9590847760161808 0.022788930399762042 0.08198106102264563 0.0 0.0 0.07792273605704718 0.01836656502484919 0.18256823382062404 0.7385747858190231 -0.04092445871999273 FGTVLTEHVAAAELGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FGTVLTEHVAAAELGAR 17 0 O43598;H0Y8X4;O43598-2 O43598 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 0 155.1 1.1324e-07 343210000.0 221280.0 240270.0 246310.0 240500.0 201650.0 236870.0 269190.0 199760.0 293160.0 265260.0 False True 220088.65306651918 248267.24170371794 280988.30703510053 270947.27534097945 227328.9322268098 220495.7344320038 256168.25129433756 214667.1055607268 220914.64614274102 248330.87969948855 0.8862717892066182 0.9997437370823652 1.1315077181506044 1.0910736339711742 0.9154275638289779 0.8879110592240129 1.0315601974443662 0.8644398385754558 0.8895979686862762 1.0 17.92190414480911 3.2216836544574443 24.997186047666975 0.9255981973547698 1.0326458649116768 0.26822431997754026 0.07682388877680009 301.76162983420295 446950.97870803985 0.022973673485393347 0.027524359782119548 1666.0332109906117 -3.2216836544574443 0.10704766755690698 FGVEQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FGVEQDR 7 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;; 153.73 0.004017 5389760000.0 4020820.0 4964100.0 4518280.0 4637000.0 4181360.0 4467280.0 4611980.0 3955700.0 5335300.0 4526750.0 False True 3999172.3518750938 5129327.0676381765 5154414.550406212 5224043.724557676 4713831.411137575 4158467.448445983 4388880.907925478 4250894.420637598 4020486.8043572376 4237848.939454346 0.9436797792962428 1.2103609970341733 1.2162808594753451 1.2327111700282338 1.1123169981949652 0.9812684472376253 1.0356388277706234 1.0030783261436713 0.9487093244231836 1.0 22.014900732262138 2.866448525420878 4.049720545297336 0.9983916769094227 1.1609411529949434 0.472987937068329 0.07900596160972521 0.20359992166121527 5.696098274666363 0.02473686284031048 0.026480203311693585 735.2728423921378 -2.866448525420878 0.16254947608552073 FGVLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 FGVLFR 6 0 Q9P1F3 Q9P1F3 ABRACL Costars family protein ABRACL 0 ; 147.63 0.025284 1435500000.0 758440.0 936550.0 806290.0 799770.0 685260.0 790760.0 753290.0 684250.0 958990.0 749760.0 False True 754356.6433106052 967722.5005935702 919808.6236016861 901020.7999977334 772523.799145766 736096.6224488164 716850.4848527502 735312.2095510965 722659.7643076375 701909.6748981692 1.074720395355777 1.3786994754474131 1.310437306246176 1.2836705807317026 1.1006028649738175 1.0487056223517748 1.0212859438883621 1.0475880812695355 1.029562335655907 1.0 19.42092586399702 3.120406704980629 3.203279589905055 1.0348624231452048 1.274969268421278 0.6869898700882788 0.07383104496756647 0.13278042158708123 2.7077584760923115 0.021565241961608597 0.02658238803348124 1319.4918283930576 -3.120406704980629 0.24010684527607307 FGVQMDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FGVQMDR 7 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;; 143.85 0.005568600000000001 2976360000.0 2502510.0 3024860.0 2940440.0 2900510.0 2507940.0 2846230.0 2872270.0 2564960.0 3466870.0 2813480.0 False True 2489036.7642149967 3125540.636533519 3354428.393237346 3267714.268604011 2827311.2932750043 2649476.819404743 2733327.3269630657 2756370.3398029706 2612506.34217794 2633921.297658588 0.9449928387866465 1.1866492135934181 1.2735492120509635 1.2406271483923343 1.0734228451656205 1.0059058415146964 1.0377406984000792 1.0464892562481778 0.9918695537715252 1.0 21.328780807411388 3.0490023871955763 5.95584930281933 1.0246353825791374 1.1707995676218614 0.39886769885150397 0.0833151093276139 0.19910230733394046 16.145043872621496 0.025103097578358782 0.02992929039904744 1119.444036721727 -3.0490023871955763 0.146164185042724 FGVQSER ddPTM_BT-474_Trastuzumab_2h_R1 6 FGVQSER 7 0 Q14247 Q14247 CTTN Src substrate cortactin 0 ;;;;; 116.9 0.012449 1768870000.0 1500080.0 1924700.0 1884530.0 1760260.0 1668520.0 1662570.0 1826180.0 1446130.0 2048300.0 1735200.0 False True 1492003.7359545548 1988762.4759942822 2149855.4433715944 1983108.7355164762 1880996.1319071476 1547640.449168812 1737840.6967149382 1554047.5638993485 1543523.910813812 1624458.0504205392 0.9184624592603701 1.2242621319026563 1.323429338673929 1.2207817462587536 1.1579222568537217 0.9527118590524141 1.0697972140708998 0.9566560142916816 0.9501777595390813 1.0 20.63152705769352 2.808817193311778 5.109004148897309 0.9880867007400018 1.1859954929946581 0.44308278774345344 0.1019859121587136 0.2014241376658057 10.038203496759023 0.03219988674287363 0.03402290813200806 643.8981737225013 -2.808817193311778 0.1979087922546563 FGVQTDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FGVQTDR 7 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;; 129.68 0.008460500000000001 3437240000.0 2340420.0 3020490.0 2642570.0 2795430.0 2941020.0 2902760.0 2769600.0 2582010.0 2985700.0 2854870.0 False True 2327819.438765109 3121025.1837252374 3014620.886369799 3149331.1513781035 3315541.464208738 2702099.0335620525 2635623.86710055 2774692.6973811146 2249914.2413302725 2672669.7524228278 0.8709715955945904 1.167755642423074 1.127943653957615 1.1783465385213316 1.2405354089120566 1.0110111925023832 0.9861389963018458 1.0381726716762523 0.8418227651548348 1.0 21.34985015176988 2.5258128542038825 11.578417004795247 0.980235786008924 1.124160034442794 0.3250004768417758 0.10268355182097012 1.389853083039026 328.92872105794754 0.032978675289215886 0.031025685913950368 335.59296965285245 -2.5258128542038825 0.14392424843386997 FGWDCHGLPVEYEIDK ddPTM_BT-474_Trastuzumab_2h_R1 4 FGWDCHGLPVEYEIDK 16 0 A0A0A0MSX9;P41252;Q5TCD1 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;; 182.35 2.1582e-09 2225200000.0 2470440.0 2412070.0 2184850.0 2100400.0 1905040.0 2322320.0 2538820.0 2206290.0 3719110.0 2452550.0 False True 2457139.4255316863 2492354.291822896 2492457.888943365 2366310.4246411347 2147635.5519432784 2161783.484553258 2416007.577365769 2370934.5631136135 2802585.174020771 2296026.1592663033 1.0701704837356325 1.0855077943098563 1.085552914492852 1.0306112650725594 0.9353706808939655 0.9415326022435464 1.052256119824787 1.0326252397190663 1.2206242349243699 1.0 21.130707648458323 -0.6224487639593342 6.329544029230253 1.0000007479559396 1.0444796637006206 0.032867229605819115 0.07612716226751398 0.0 0.0 0.07528783744618812 0.017745513466356708 0.23853451907840803 0.6224487639593342 0.04447891574468099 FGYDEIDNGYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FGYDEIDNGYLK 12 0 Q15067-2;Q15067;Q15067-3 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 96.229 0.003996199999999999 0.0 67412.0 79643.0 74608.0 73907.0 63786.0 78651.0 77725.0 73222.0 95068.0 86358.0 False True 67049.06128217728 82293.86910978991 85112.15789563883 83263.61862214454 71908.76901075771 73214.04149453928 73965.14481166619 78686.19745378222 71639.76524593431 80846.5585051964 0.829337234903669 1.0179019445150592 1.0527616693809947 1.0298968832024282 0.8894474958527243 0.9055925551838234 0.9148830349644641 0.9732782558545727 0.8861201586129318 1.0 16.30289874158282 3.2378986362293545 24.999984895535466 0.9281398767361011 0.9900254839608499 0.1364318324910242 0.06578116116318516 32.53402282470448 1228691.3178662453 0.018720571982249443 0.023690091472894612 1729.412669425237 -3.2378986362293545 0.061885607224748784 FGYTVSEENYMCR ddPTM_BT-474_Trastuzumab_2h_R1 3 FGYTVSEENYMCR 13 0 Q96EK6;G3V5E4 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase 0 ;; 190.15 1.0829e-05 264650000.0 73080.0 87281.0 75183.0 79572.0 84396.0 70043.0 75418.0 66505.0 79592.0 82343.0 False True 72686.54539995136 90186.09532252124 85768.1128976492 89645.80704129893 95143.33034571694 65201.09227348681 71769.74321526194 71467.94080554726 59977.61807815891 77087.79924261101 0.9429059606591178 1.1699139968788994 1.112602950665636 1.162905257668147 1.2342203471950404 0.8458030053275445 0.9310129997275955 0.9270979520458624 0.7780429415217461 1.0 16.23421492107696 2.730317296819367 24.99906709729593 0.8977852757281722 1.128503764855766 0.6243337947886024 0.08844501920287591 395.27845119549085 1198736.5047456354 0.027582255175218628 0.026399270595279356 537.4242967357114 -2.730317296819367 0.23071848912759385 FGYVDFESAEDLEK ddPTM_BT-474_Trastuzumab_2h_R1 7 FGYVDFESAEDLEK 14 0 P19338 P19338 NCL Nucleolin 0 ;;;;;; 315.64 1.6417e-55 1209620000.0 1125099.0 1029659.0 934348.0 835266.0 878428.0 1147928.0 1089094.0 1082123.0 1531590.0 1116090.0 False True 1119041.591994251 1063930.5773729905 1065896.076901597 941010.5899582483 990290.5989493273 1068574.4392918516 1036410.3624768953 1162876.5131692553 1154150.1667545384 1044860.1806672774 1.0709964957029936 1.0182516254888134 1.0201327379715872 0.9006091028919221 0.9477733167292293 1.0226961071570644 0.9919129675465421 1.1129494019253459 1.1045977137510066 1.0 19.99487846842093 1.7507060193167714 24.99999999982567 1.0818067398741684 0.9933299847302997 0.3063936361971624 0.05204819806799016 3.7860620117736987 7806.082418360937 0.024921908738520713 0.013820365466119033 56.3256249842838 -1.7507060193167714 -0.08847675514386877 FHCPHCDTVIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FHCPHCDTVIAR 12 0 A0A2R8Y595;A0A2R8YFL0;P49711-2;P49711 A0A2R8Y595 CTCF Transcriptional repressor CTCF 0 ; 111.63 0.00078708 192826000.0 64895.0 109196.0 111494.0 101084.0 91294.0 92703.0 82901.0 34323.0 98439.0 66769.0 False True 64545.61253051233 112830.52284962405 127191.38607677918 113881.22403562389 102919.74975806767 86294.65980938927 78890.76191742599 36884.35654866247 74180.02746502016 62507.74525618317 1.0326018362360876 1.8050646745806758 2.034810015230834 1.8218738104996508 1.646511953618852 1.3805434743441356 1.2620957865956977 0.5900765800701143 1.1867333745762072 1.0 15.931747342930198 2.275803628604493 1.8387828531352017 0.8910149508078039 1.701258985674755 0.5438798259195894 0.2877963964910823 0.23940619437257735 1.6356818427883189 0.1435544301429306 0.09487262669125993 188.7137864410055 -2.275803628604493 0.8102440348669512 FHDEVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHDEVGK 7 0 B0QYR6;Q9UJY5-4;Q9UJY5-3;Q9UJY5;Q9UJY5-6;B0QYR8;B0QYR9;B0QYS0;B0QYS1;B0QYS2;B0QYS3;B0QYR5;B0QYS5 B0QYR6 GGA1 ADP-ribosylation factor-binding protein GGA1 0 77.741 0.037226 148210000.0 212890.0 200690.0 160090.0 175270.0 173090.0 227690.0 209490.0 121160.0 275900.0 178800.0 False True 211743.8238943024 207369.84533033334 182629.28047277516 197459.16402916226 195131.98551519206 211950.3262246081 199356.16837048507 130201.57443801391 207908.14187059022 167388.83092161862 1.264981795550346 1.2388511478847486 1.0910481868308946 1.179643605502116 1.1657407751808986 1.2662154640643606 1.1909765261687948 0.7778390811450377 1.2420669929163024 1.0 17.352843741204566 1.9063867251331412 15.76474119734847 0.9824829238070315 1.1979932390812336 0.36482848776647847 0.11541019814301336 2.2809631448954013 381.7719629813796 0.04544159285030578 0.029255560408975225 80.60959239477589 -1.9063867251331412 0.21551031527420206 FHDFDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FHDFDHR 7 0 Q15424;Q15424-3;Q15424-4;Q15424-2;K7EII0;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ; 131.04 0.003505 611630000.0 662430.0 793000.0 588980.0 742510.0 671230.0 791800.0 599860.0 75544.0 703660.0 256020.0 False True 658863.5504828916 819394.5256213766 671903.2644940672 836511.6898687343 756707.161808091 737064.7296967137 570842.4801122682 81181.47688465926 530252.4215609265 239680.58441025025 2.748923331041054 3.4186937904776493 2.8033278796750647 3.4901103563604288 3.157148350877141 3.075195813254168 2.381680107785382 0.3387069381711147 2.2123294753542395 1.0 17.87075352105615 1.9673165717229362 4.716388609555819 1.1432046671008123 3.113827721359052 0.7640353638776372 0.47952708349213835 0.08490460949210467 4.522662846709283 0.19929517529795743 0.12322805522056442 92.75056668214177 -1.9673165717229362 1.97062305425824 FHDFLGDSWGILFSHPR ddPTM_BT-474_Trastuzumab_2h_R1 3 FHDFLGDSWGILFSHPR 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;; 280.7 3.5881e-36 8060179000.0 914662.0 1189677.0 1138352.0 1195775.0 911422.0 1052133.0 1045769.0 134533.2 1249225.0 600266.0 False True 909737.5614205014 1229274.6797700655 1298622.0668670414 1347159.9923944285 1027486.189278569 979401.5221646779 995181.1582444683 144572.75052974728 941370.2375073883 561956.5099664226 1.6188753849917303 2.187490771916702 2.3108942486396953 2.397267348099451 1.8284087310243318 1.7428422036132263 1.7709220208231617 0.25726679550057285 1.675165641490008 1.0 19.100098958470994 1.9262002941706327 6.859837899472592 0.9145067824542855 2.022207494223695 0.5808126663106004 0.39353930520054153 0.1648295357865151 12.96275493345001 0.16861390784840416 0.10448025008659526 84.37237887104028 -1.9262002941706327 1.1077007117694095 FHDIDDVK ddPTM_BT-474_Trastuzumab_2h_R1 5 FHDIDDVK 8 0 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;H0Y9D8;D6R967 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ;;;; 163.99 0.00033272 1333110000.0 2306640.0 2024970.0 1748990.0 1613730.0 1897790.0 2878690.0 2145560.0 704924.0 2814170.0 1748300.0 False True 2294221.3065317934 2092369.9023297878 1995232.589506398 1818028.0525405349 2139462.3074173913 2679692.9360073623 2041771.065964854 757529.008411542 2120655.51144603 1636721.997205066 1.4017171581059584 1.278390530525529 1.219041836618277 1.1107738856354803 1.307162921419047 1.6372315766411867 1.2474757896890654 0.4628330343852712 1.2956723958420238 1.0 20.64237786528804 1.9696476489445633 24.167031910209843 0.8586508492030885 1.3192929196647898 0.3772648513972445 0.2304058400664534 394.6770565611567 314247.4353942486 0.09309627037697374 0.06018013931864205 93.24974415840103 -1.9696476489445633 0.46064207046170125 FHDIDDVKK ddPTM_BT-474_Trastuzumab_2h_R1 4 FHDIDDVKK 9 1 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;H0Y9D8;D6R967 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ;;; 198.58 1.6968e-05 1304142000.0 4779630.0 3949090.0 3635720.0 3139440.0 3600080.0 5936360.0 4727210.0 1668140.0 7297060.0 3772460.0 False True 4753897.003146811 4080533.073374684 4147597.7737552514 3536892.782105967 4058528.848654067 5525993.405888333 4498536.792604129 1792625.0774432847 5498797.338594451 3531698.3730345047 1.3460654056541554 1.1554024841222807 1.1743918465470633 1.0014707963486131 1.1491719903494757 1.5646844158835373 1.2737601905507285 0.5075815905260975 1.556983852465797 1.0 21.751930703276248 FHDLLSQLDDQYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 FHDLLSQLDDQYSR 14 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224;J3KPM9;A0A669KBI6;P42224-2;A0A669KB52;E7EPD2;A0A669KB75;D2KFR9;A0A669KB17;E7ENM1 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription 0 ;;; 200.19 1.9597e-08 1133930000.0 675350.0 795797.0 773249.0 815171.0 760690.0 808781.0 788105.0 288502.0 866802.0 605509.0 False True 671713.9906384393 822284.6220755555 882115.7379992058 918371.5650186354 857559.3625371282 752871.8731356874 749981.3502965347 310031.4842234721 653190.2616517267 566864.8972176643 1.1849631083798 1.4505830685787118 1.5561304683512478 1.6200889656887678 1.5128108421358877 1.3281328175919849 1.3230336787083812 0.5469230600539841 1.1522856060725792 1.0 19.112645408300498 1.9152219097509477 6.410878315768737 0.8628433230216263 1.448707943094867 0.6386353425968646 0.1822303076992773 0.13670249746908425 8.500849295088821 0.07905272558103757 0.04852303273710525 82.26628954108881 -1.9152219097509477 0.5858646200732408 FHDNFGFDDLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FHDNFGFDDLVR 12 0 O00165-3;O00165;O00165-2;O00165-5;O00165-4 O00165-3 HAX1 HCLS1-associated protein X-1 0 95.428 0.0060524 103670000.0 66718.0 69474.0 63568.0 64580.0 67499.0 79457.0 73266.0 46227.0 88490.0 66212.0 False True 66358.7977010666 71786.40009208016 72517.82185703896 72755.82137846346 76094.59755208249 73964.32461165918 69721.84367670023 49676.69347594968 66682.82520525016 61986.293473054844 1.0705398562008304 1.1581011876970089 1.1699009215410197 1.1737404723205473 1.2276036086132567 1.1932367700580633 1.1247945274709479 0.8014141625929595 1.0757672619066485 1.0 15.91966161884638 1.9166729963099487 7.686719000218979 0.9417404910562341 1.1678005618186442 0.6076125221677517 0.07409018964320987 0.16851743501074884 13.878068732123927 0.030406096678610658 0.018999420619181452 82.5416215243868 -1.9166729963099487 0.22606007076241008 FHDPDSAVVAQHLTNTVFVDR ddPTM_BT-474_Trastuzumab_2h_R1 5 FHDPDSAVVAQHLTNTVFVDR 21 0 Q05519-2;Q05519;B4DWT1;Q5T760 Q05519-2;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 0 ;;;; 329.08 2.8312999999999993e-80 3175610000.0 636669.0 895012.0 889375.0 994374.0 935704.0 907494.0 921887.0 354466.0 932225.0 718217.0 False True 633241.2448445753 924801.9333738204 1014591.2694139193 1120261.6464445363 1054860.3580478798 844761.0757910943 877291.8038596646 380918.05286187714 702490.639925013 672379.7761634901 0.9417910343136224 1.375416046346036 1.5089556607473273 1.6661144284210936 1.568846053143914 1.2563749026051751 1.3047563816766996 0.5665221744701262 1.0447825244437472 1.0 19.358916806287176 1.8883754089131022 6.1214886553139465 0.838033420665863 1.4018812639260816 0.5233686874426308 0.2205225968075608 0.17244069650128774 8.14040028090296 0.09999636097841863 0.06070352139951279 77.3348787426618 -1.8883754089131022 0.5638478432602186 FHDTS(ph)SPLMVTPPSAEAHWAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FHDTSSPLMVTPPSAEAHWAVR 22 0 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 FHDT(0.001)S(0.634)S(0.365)PLMVTPPSAEAHWAVR;FHDT(0.086)S(0.457)S(0.457)PLMVTPPSAEAHWAVR 182.03 7.9477e-17 1152280000.0 96429.0 132577.0 119811.0 125806.0 118121.0 139264.0 108506.0 38137.0 115056.0 96340.0 True False 95909.83697826907 136989.74530051104 136679.34738411946 141733.0267008202 133163.00919198123 129637.00747219377 103257.15024682708 40982.97659576209 86701.99047141234 90191.4987191764 1.0634021869056363 1.5188764711300276 1.5154349281819717 1.5714676961087588 1.476447459938575 1.4373528471440127 1.1448656659795884 0.45439955181771857 0.9613100092878031 1.0 16.460703833720864 1.9956884430231496 4.492532302550335 0.750971868322369 1.440693947249123 0.6764767303136864 0.1924212724054966 0.09871843152129155 5.016710262372415 0.08102223403208 0.05212358606246535 99.01213903823277 -1.9956884430231496 0.689722078926754 FHDTSS(ph)PLMVTPPSAEAHWAVR ddPTM_BT-474_Trastuzumab_2h_R1 9 FHDTSSPLMVTPPSAEAHWAVR 22 0 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 FHDT(0.004)S(0.114)S(0.882)PLMVTPPSAEAHWAVR;FHDTS(0.023)S(0.977)PLMVTPPSAEAHWAVR;FHDTS(0.032)S(0.968)PLMVTPPSAEAHWAVR;FHDT(0.031)S(0.157)S(0.812)PLMVTPPSAEAHWAVR;FHDTS(0.049)S(0.951)PLMVTPPSAEAHWAVR;FHDT(0.036)S(0.167)S(0.798)PLMVTPPSAEAHWAVR;FHDT(0.003)S(0.024)S(0.973)PLMVTPPSAEAHWAVR;FHDT(0.007)S(0.04)S(0.953)PLMVTPPSAEAHWAVR;FHDTS(0.023)S(0.977)PLMVTPPSAEAHWAVR 246.92 8.8274e-31 7845499000.0 737231.0 811476.0 677348.0 777105.0 744528.0 850556.0 641683.0 197375.0 761531.0 589651.0 True False 733261.8302100634 838485.4881123984 772712.710785641 875486.4133216294 839339.2276368069 791759.0657134604 610642.3418228935 212104.1247499418 573861.8890425975 552018.9683543814 1.3283272355585596 1.5189432540914305 1.3997937663069218 1.5859716124095042 1.520489830519689 1.4342968468525021 1.1061981142482724 0.3842333994106098 1.0395691487800354 1.0 19.074358315861687 2.0470930055479926 3.9309938629042978 0.7378529836641802 1.469018075856626 0.7171558986179322 0.18381693761759182 0.0965165547028446 3.133560935819407 0.07430705450930213 0.04986239098627146 111.45331888723683 -2.0470930055479926 0.7311650921924459 FHEFHSPALEDADFDNKPMVLLVGQYSTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHEFHSPALEDADFDNKPMVLLVGQYSTGK 30 1 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1;Q9NZN3-2;Q9NZN3 A0A024R571;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 0 162.27 2.519e-12 382980000.0 306420.0 258430.0 260240.0 239500.0 233120.0 344570.0 331660.0 35760.0 409500.0 186160.0 False True 304770.2687664622 267031.6863257661 296879.52995336987 269820.67544351204 262806.4501895058 320750.68693053327 315616.33873576275 38428.59278560063 308584.2120188722 174279.1094204055 1.7487481418744164 1.5322070855986405 1.7034716951486193 1.5482100886379675 1.5079630086676072 1.8404425406880012 1.8109820493425632 0.22050028206708988 1.7706322521679214 1.0 17.411040120539234 1.7719551879936921 24.99999999998186 0.9209940979054622 1.6618606506291118 0.41151780749134026 0.3654640304102013 26.627738013465056 19943.707817508435 0.15713522280781908 0.08717558826512693 59.15005979496287 -1.7719551879936921 0.7408665527236497 FHEVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHEVFK 6 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 74.743 0.079523 387860000.0 848910.0 711690.0 485320.0 534690.0 510450.0 775600.0 483400.0 248470.0 960690.0 581010.0 False True 844339.5628827672 735378.1714243094 553648.837522938 602381.6991769986 575452.7818258125 721984.5975660153 460016.0952326721 267012.09310509503 723940.8220864718 543929.4443723127 1.5522961141717997 1.3519734572797872 1.017868849078103 1.1074629355138863 1.0579548281117181 1.3273497234538862 0.8457275111545478 0.4908947214895185 1.3309461908646807 1.0 19.053059999339393 7.999999999994353 0.3795290198158898 0.8916567591569298 10.548019783919301 0.34519748970687636 0.23265538630189275 69.90311672855174 0.9571017174758802 0.18663595894206153 496.09488427142566 99999999.99869972 -7.999999999994353 9.65636302476237 FHFPPLDTHS(ph)PTNDVQPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 FHFPPLDTHSPTNDVQPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 1 FHFPPLDT(0.261)HS(0.738)PT(0.001)NDVQPGR;FHFPPLDTHS(0.999)PT(0.001)NDVQPGR;FHFPPLDT(0.005)HS(0.856)PT(0.14)NDVQPGR 239.57 1.7586e-24 729830000.0 339020.0 434050.0 379510.0 413120.0 433490.0 380990.0 361880.0 108615.0 366920.0 259911.0 True False 337194.7539886628 448497.09186123475 432941.7092399452 465420.94964185194 488692.3820034698 354653.05805399205 344374.4818841524 116720.40283579467 276497.4824761037 243323.25745899763 1.3857892480560903 1.8432150569774899 1.779286179879045 1.9127680374749214 2.008408021110844 1.4575386740979932 1.4152962009485792 0.47969275134113804 1.136338077023715 1.0 17.892514697784044 2.091191427157969 2.3700755097414294 0.83129457787764 1.7763777676726948 0.7062793876024931 0.2445505994464265 0.14168732685383448 1.5520152271048184 0.11794088932651355 0.0706240283321015 123.36484776772593 -2.091191427157969 0.9450831897950548 FHGILDQGEGVLIIFDEPPVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHGILDQGEGVLIIFDEPPVDK 22 0 O00231 O00231 PSMD11 26S proteasome non-ATPase regulatory subunit 11 0 ; 143.95 1.0381e-07 129770000.0 304330.0 250237.0 232363.0 224923.0 243899.0 312505.0 272956.0 123399.0 381703.0 241185.0 False True 302691.5210942415 258565.98727353895 265077.69066459796 253398.22873812533 274958.0919473676 290902.2649076427 259752.07548682092 132607.65998742558 287637.41020815476 225792.36681113314 1.34057464107027 1.145149372962726 1.1739887154215694 1.1222621575603726 1.217747507724031 1.2883618211547936 1.1504023769948513 0.5872991273365186 1.2739022769921744 1.0 17.78463718929057 1.973683145861728 24.735088397767253 0.8981212381959828 1.2067568808871167 0.3083219502746589 0.16878892288615138 596.084376269594 560256.1642047472 0.06579868022827222 0.042638103635671804 94.12026599249808 -1.973683145861728 0.30863564269113397 FHGTVK ddPTM_BT-474_Trastuzumab_2h_R1 6 FHGTVK 6 0 P04406;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;; 114.67 0.025089 3987960000.0 5415060.0 8506280.0 6493720.0 6973930.0 6438000.0 5374940.0 5957840.0 2634070.0 4918530.0 4690580.0 False True 5385905.918629725 8789406.387645165 7407979.331573933 7856828.822946839 7257841.138984383 5003383.0490478 5669636.518041004 2830637.678936437 3706424.1864253553 4391223.168592425 1.2265161008330485 2.001584991286732 1.6869967767883927 1.7892119168849459 1.652806259288988 1.139405322151185 1.2911292139721438 0.6446125761000158 0.8440527944320859 1.0 22.066191425592336 2.395938787856693 1.3393272689789706 0.8202412745423832 1.7104813837756232 0.7020035326197598 0.22880845412129722 0.21073334891407255 0.7581588640150496 0.11970894261241098 0.0812099028790487 248.85065480994024 -2.395938787856693 0.89024010923324 FHGVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHGVLK 6 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 93.595 0.04544 618930000.0 1780640.0 1702470.0 1624510.0 1558180.0 1473220.0 1978910.0 1887530.0 1049600.0 2308400.0 1694960.0 False True 1771053.2320877032 1759135.6847851507 1853226.887505951 1755445.4282362042 1660825.8345409397 1842112.6095530738 1796222.962835176 1127926.4817608069 1739525.7509752475 1586786.201671738 1.1161259344339098 1.1086154410290663 1.1679121519669808 1.1062898242918784 1.0466601189191072 1.1609078826198136 1.131988015110535 0.7108244832054215 1.0962571700854171 1.0 20.59767632662992 1.7822785026750987 24.999999994162483 0.9053567897767358 1.1194571349561073 0.42363830066019703 0.09647156627648552 57.25546855278679 32752.715679315035 0.04163109155050314 0.023187161444984464 60.5729189889416 -1.7822785026750987 0.2141003451793715 FHHTIGGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 FHHTIGGSR 9 0 P61313;E7ERA2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ;; 125.82 0.00049093 719710000.0 714933.0 1005358.0 845771.0 978260.0 970370.0 884049.0 956690.0 253679.0 955113.0 582166.0 False True 711083.8801645231 1038820.7332782549 964848.2052266818 1102107.6156967417 1093940.867666399 822936.7734575009 910411.2497892932 272609.815135861 719738.1990084993 545011.6674626112 1.304713132977662 1.9060522834578029 1.770325779847405 2.0221725175678893 2.0071879795884287 1.5099434059619572 1.670443596240532 0.5001907874835771 1.3205922771513412 1.0 19.05592758948284 1.850023435449471 6.834983320162533 0.9093423807052992 1.7673551383718635 0.6366298622641267 0.27735027746203017 0.13983394302106747 7.45304798071778 0.11800521174164302 0.0721448191608437 70.79839876678565 -1.850023435449471 0.8580127576665644 FHINWEDNTEKLEDAES(ph)SNPNLQSLLSTDALPSASK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASK 36 1 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 FHINWEDNT(0.001)EKLEDAES(0.498)S(0.498)NPNLQS(0.001)LLSTDALPSASK 129.09 9.2301e-09 266590000.0 240480.0 187270.0 190240.0 165850.0 191820.0 329100.0 290510.0 103940.0 454030.0 240110.0 True False 239185.28239983984 193503.16874289454 217024.13840427704 186846.59299501637 216247.1399937847 306350.0916180704 276456.9214440285 111696.53059662555 342140.39019030094 224785.97423148653 1.0640578586701535 0.8608329296543357 0.9654701061587754 0.8312199799556895 0.9620134918697887 1.3628523428360722 1.2298673099564956 0.4969016905013811 1.5220717901107204 1.0 17.778192494257414 2.9830219519087344 24.83877595110113 1.0623500128387893 0.9240174165842535 0.0909747279892712 0.2621565241467151 2310.827638441485 3380731.6145406934 0.08282046290007992 0.08983881995643153 961.6608853988502 -2.9830219519087344 -0.13833259625453576 FHKPGENYK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHKPGENYK 9 1 P47897;A0A1B0GVU9;P47897-2;B4DDN1;A0A0U1RQT0;C9J165;A0A0U1RR66;A0A0U1RQJ6 P47897 QARS Glutamine--tRNA ligase 0 ; 156.83 4.2059e-05 850860000.0 1097510.0 930180.0 1061610.0 895380.0 805970.0 1150550.0 1169410.0 427680.0 1596410.0 970050.0 False True 1091601.1281048232 961140.4789943153 1211075.4603204634 1008735.0161946205 908605.5021415408 1071015.1866033773 1112841.1707199812 459595.6533150358 1202996.14629804 908140.5784984115 1.20201778661819 1.0583608989078959 1.3335770793580741 1.1107696760588979 1.0005119511826 1.179349554420611 1.2254062829788284 0.5060842607374357 1.3246805338080643 1.0 19.79255611579028 FHMYEGYPLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHMYEGYPLWK 11 0 P00491;G3V5M2;G3V393 P00491 PNP Purine nucleoside phosphorylase 0 ; 118.4 0.00072507 1298130000.0 3024600.0 3043100.0 2889600.0 2644900.0 2474620.0 3058300.0 3214500.0 1169130.0 4153700.0 2707680.0 False True 3008315.889664649 3144387.7439072067 3296430.5631465497 2979744.068812292 2789748.1887781187 2846886.9194638273 3059002.354417504 1256376.4173218487 3130076.2917284216 2534873.544238523 1.1867715833407966 1.2404515211632705 1.3004319567100135 1.1755000858267304 1.100547281784094 1.1230883394299787 1.2067672414548116 0.49563672325092833 1.2348056962615457 1.0 21.273482347459904 1.8535760412186129 19.357197363464245 0.8530569653340434 1.1900606378050964 0.32477530680941824 0.17966948422430123 3.4744009073650948 573.5677090137248 0.07068159158475125 0.045583863413174074 71.37991742615625 -1.8535760412186129 0.337003672471053 FHNLEGFLEEFADIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHNLEGFLEEFADIAK 16 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 165.02 7.1739e-09 383130000.0 508600.0 509800.0 447070.0 450660.0 457940.0 624970.0 526150.0 162953.0 703820.0 412310.0 False True 505861.754110772 526768.3848193922 510013.5699978986 507713.5097927888 516255.9445769659 581767.2949211344 500698.1144118129 175113.38031856786 530372.9917048172 385996.0228036499 1.3105361823069765 1.364698996101706 1.321292292841407 1.3153335262499706 1.337464414340811 1.5071846872812735 1.2971587395513404 0.45366628144675286 1.3740374521283851 1.0 18.558226456875733 1.9649433337647488 23.667996311733305 0.8802509100575768 1.3588609717621931 0.4214874262863385 0.21639606933889674 239.72051779906357 161843.13317303522 0.08367658871704692 0.05403259356890127 92.24510589686008 -1.9649433337647488 0.4786100617046163 FHPEPYGLEDDQR ddPTM_BT-474_Trastuzumab_2h_R1 6 FHPEPYGLEDDQR 13 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 0 ;;;;; 182.02 1.156e-05 6890460000.0 4023280.0 5193070.0 5000700.0 5134840.0 4950000.0 5315500.0 4900970.0 4053510.0 5558030.0 4802570.0 False True 4001619.1075084317 5365918.195672899 5704755.093136397 5784910.217512993 5580353.159051364 4948051.996341096 4663891.357576471 4356003.499506713 4188327.980286321 4496065.870912966 0.8900267972933117 1.1934696576372226 1.2688326321113252 1.2866604679744862 1.2411635681659228 1.1005292489934873 1.0373271859180804 0.9688477937317648 0.9315539630730196 1.0 22.100231741658664 2.2468943358285647 2.0474036545006196 0.9678003476178224 1.1870309200888103 0.4237591706959615 0.10598602899755626 0.30819393550938257 2.6176803929154726 0.05226250785288784 0.0347716990828782 176.56081946331975 -2.2468943358285647 0.21923057247098787 FHQLDIDDLQSIR ddPTM_BT-474_Trastuzumab_2h_R1 4 FHQLDIDDLQSIR 13 0 O75828;P16152;E9PQ63;A8MTM1;P16152-2 O75828;P16152 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 0 ;;; 244.0 5.1507e-17 1668650000.0 1606500.0 1932020.0 1701960.0 1822840.0 1736120.0 1843950.0 1809530.0 517320.0 1875300.0 1435620.0 False True 1597850.78249893 1996326.1177692448 1941581.1742984836 2053611.3571000064 1957204.591210555 1716482.0766914028 1721996.1208241116 555925.0452977329 1413157.4427325772 1343997.5025038803 1.1888792795538077 1.4853644549562555 1.4446315344197436 1.5279874800913757 1.4562561221760189 1.2771467755658623 1.2812494945980304 0.41363547496333825 1.0514583844834915 1.0 20.35809902654158 1.9085497427113542 6.797940238056792 0.7711915588904124 1.4010808718243348 0.6542887099236538 0.18649269246630504 0.13148654056084377 8.312004105280167 0.07783860010756137 0.048026242178730826 81.01207250229312 -1.9085497427113542 0.6298893129339225 FHS(ph)PSTTWS(ph)PNKDTPQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 FHS(0.981)PS(0.025)T(0.006)T(0.003)WS(0.984)PNKDTPQEK;FHS(0.995)PS(0.005)TTWS(1)PNKDTPQEK;FHS(0.923)PS(0.091)T(0.062)T(0.24)WS(0.681)PNKDT(0.003)PQEK;FHS(0.994)PS(0.031)T(0.069)T(0.167)WS(0.738)PNKDTPQEK 213.2 1.4374e-16 3003850000.0 3146200.0 2158710.0 1960290.0 1842630.0 1811780.0 3082930.0 2886650.0 1327130.0 4380870.0 2334100.0 True False 3129261.2087756814 2230561.357382251 2236281.7928538728 2075906.7690708898 2042499.4437386054 2869814.305536612 2747011.711426133 1426167.179629592 3301263.2891504667 2185135.739676455 1.4320671947084713 1.0207884649365178 1.0234063505752693 0.9500127298170784 0.9347242858427782 1.3133345693030194 1.2571355003478515 0.6526675454224914 1.5107817922740454 1.0 21.05929147141869 4.741413362974233 24.020319727058393 1.0508059860088166 1.432067440051493 0.17879557535924062 0.22571051757345992 248.65207101520497 2093468.815887702 0.05234642149623422 0.362106740568913 55133.22066316792 -4.741413362974233 0.3812614540426764 FHS(ph)PSTTWSPNK ddPTM_BT-474_Trastuzumab_2h_R1 3 FHSPSTTWSPNK 12 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 FHS(0.795)PS(0.195)T(0.009)T(0.001)WSPNK;FHS(0.968)PS(0.019)T(0.005)T(0.008)WSPNK;FHS(0.496)PS(0.496)T(0.006)T(0.001)WSPNK 128.28 0.00016408 2511690000.0 4252400.0 4199580.0 4156550.0 3658430.0 3307620.0 4308820.0 4246460.0 1655850.0 5153600.0 3132970.0 True False 4229505.550886059 4339360.481600277 4741756.110619734 4121586.8628927195 3728825.801200295 4010961.415271266 4041042.506747478 1779417.9352359294 3883564.334701973 2933021.172329436 1.4420303510891268 1.4794848815066384 1.6166798096632156 1.4052359736698772 1.2713259066721372 1.3675187390773993 1.377774748055446 0.60668431309778 1.3240832938200735 1.0 21.48395605470627 1.8841112354677159 8.478340415163267 0.9429776204635832 1.4274816090786773 0.5586673008114273 0.18135720368025735 0.2009232886988329 13.52406030320389 0.07478956705623158 0.047005085003080475 76.57927236184716 -1.8841112354677159 0.48450398861509403 FHS(ph)PSTTWSPNKDTPQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 FHS(0.968)PS(0.028)T(0.003)T(0.001)WSPNKDTPQEK;FHS(0.996)PS(0.003)T(0.001)TWSPNKDTPQEK;FHS(0.945)PS(0.047)T(0.007)T(0.001)WSPNKDTPQEK;FHS(0.944)PS(0.047)T(0.009)T(0.001)WSPNKDTPQEK 185.61 3.1532999999999995e-14 2953390000.0 2182290.0 2095300.0 1912670.0 1967910.0 2061590.0 2592590.0 2568910.0 909210.0 3479620.0 2006120.0 True False 2170540.7931152135 2165040.7938644006 2181957.310774334 2217047.2042256403 2324121.266498727 2413370.355600405 2444642.0091108037 977059.86707483 2622114.2755191843 1878087.7040742585 1.1557185473322238 1.152790036997546 1.161797346333119 1.1804811880808628 1.2374934682000518 1.2850147255449909 1.3016655206290324 0.5202418741974777 1.3961617819183099 1.0 20.840833005733625 FHS(ph)SDS(ph)EEEEHKK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHSSDSEEEEHKK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 FHS(0.563)S(0.437)DS(1)EEEEHKK 114.69 0.00073728 447730000.0 829750.0 526760.0 365070.0 433870.0 533770.0 756270.0 588110.0 289180.0 1028300.0 507210.0 True False 825282.7181938909 544292.888166856 416468.682754676 488797.89751430665 601742.4455973431 703990.8349680894 559660.8725016273 310760.08002628636 774889.2435140554 474839.4235556714 1.7380248506201226 1.1462672667132527 0.8770726736126788 1.0293961985171998 1.2672546038646122 1.4825871653547562 1.1786318589783462 0.6544529889689162 1.6318974480079271 1.0 18.85708019418311 4.734903984522884 5.582023855219161 1.1121820078445537 1.758540159044734 0.30402311118603464 0.26835638413642576 0.16852881553163512 21.231497812084697 0.06559074164544562 0.4162184477211974 54313.02409169006 -4.734903984522884 0.6463581512001804 FHSEDYIDFLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FHSEDYIDFLQR 12 0 O15379;O15379-2 O15379 HDAC3 Histone deacetylase 3 0 ; 317.4 1.6036e-46 191746000.0 185980.0 232890.0 214220.0 216370.0 197271.0 219420.0 223690.0 112952.0 244210.0 197364.0 False True 184978.7043443205 240641.6028650218 244380.3139663805 243762.41981508388 222392.29253317593 204252.01185912194 212869.26012121717 121381.05179863422 184027.71774634588 184768.06054817844 1.001140044418484 1.3023982724669791 1.3226328903455589 1.319288729295952 1.2036295227290483 1.105450862303461 1.1520890541886233 0.6569374135254507 0.9959931234887887 1.0 17.495355865004765 1.9003633133119129 6.591662281261473 0.8551123989220413 1.215739008440949 0.5553671852194217 0.12975206947808793 0.16082080817153926 9.039281242390695 0.05638081599065404 0.03462439779768716 79.49930158320541 -1.9003633133119129 0.3606266095189077 FHSETLTEGDLVDLMK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHSETLTEGDLVDLMK 16 0 O75828 O75828 CBR3 Carbonyl reductase [NADPH] 3 0 ; 137.46 1.1923e-05 202282000.0 318910.0 295520.0 259410.0 234910.0 249360.0 335820.0 324700.0 151575.0 394200.0 287690.0 False True 317193.0239942323 305356.2045543876 295932.6731678597 264649.5819141353 281114.5179274848 312605.5538352493 308993.0205255449 162886.29618225447 297054.6920093753 269329.3778961991 1.1777141672100846 1.1337649347412573 1.09877606178526 0.9826242646880229 1.043757350658671 1.1606812308300396 1.1472681626459342 0.604784734047957 1.1029420345071368 1.0 18.039012079075988 1.7850698477882176 24.999999999130715 0.8604115450432297 1.1020524704428567 0.3202380246344757 0.1317328553774894 87.61581537250716 47110.97747093991 0.058193887583624794 0.03253364146583124 60.963493723314635 -1.7850698477882176 0.241640925399627 FHSPPDKDEAEAPSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHSPPDKDEAEAPSQK 16 1 F5H8D7;P18887;M0QYS5;M0QZ96;M0R0D2;M0R1U8 F5H8D7 XRCC1 DNA repair protein XRCC1 0 171.78 2.8849e-09 349690000.0 308270.0 264800.0 215290.0 213930.0 203300.0 318870.0 309340.0 135670.0 414510.0 222610.0 False True 306610.3085720166 273613.70792501944 245600.96066577395 241013.51606526287 229189.04994649373 296827.26743924094 294376.04240644287 145794.38431830096 312359.5646494327 208402.83921399058 1.4712386344083603 1.3129077749467202 1.1784914331881433 1.156479043060384 1.0997405352580616 1.4242956984595352 1.412533742422645 0.6995796452110593 1.4988258597028907 1.0 17.66901540700545 7.99997052065449 0.6449974823594762 1.1507923547009802 29.367395710765784 0.1306474424863695 0.22211018035117602 413.60161306210676 2.705538032899645 0.08939976977075315 16645.904319795194 99993212.36021854 -7.99997052065449 28.216603356064805 FHSPS(ph)TTWS(ph)PNKDTPQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 FHS(0.446)PS(0.519)T(0.019)T(0.023)WS(0.992)PNKDT(0.001)PQEK 161.51 2.1572e-11 581540000.0 1724200.0 1085900.0 895660.0 940600.0 1021300.0 1727000.0 1506100.0 581320.0 2315500.0 1189000.0 True False 1714917.0987766304 1122043.525059587 1021761.1427837213 1059679.8635581085 1151356.5012806389 1607616.5549207148 1433244.1891392767 624701.0502831476 1744876.051110371 1113117.0020458866 1.5406440613382486 1.0080193932868635 0.9179278915924786 0.9519932420495224 1.0343535308188347 1.4442475965832415 1.2875952721097628 0.5612177777672605 1.5675585296993255 1.0 20.086173814654266 FHSPS(ph)TTWSPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHSPSTTWSPNK 12 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 FHS(0.326)PS(0.581)T(0.082)T(0.012)WSPNK 97.911 0.0029985 394360000.0 821460.0 832950.0 793690.0 720570.0 659980.0 844370.0 825850.0 322900.0 1022100.0 647310.0 True False 817037.3506327866 860674.2372210931 905434.653122849 811794.0881182937 744024.5409920646 786000.689333182 785900.4804466311 346996.43765297666 770217.1504383117 605998.1216100279 1.3482506322990995 1.4202589191769055 1.4941212205695822 1.3395983571062944 1.2277670746162141 1.29703486084234 1.2968694991308471 0.5726031571369721 1.2709893363893332 1.0 19.20895379627349 1.9076572293985843 9.235623985829964 0.9068053039304949 1.352363672234558 0.5275284395265543 0.1721941874841515 0.2656122837757078 24.85727044076276 0.07003970525447943 0.04431739834771536 80.84575653194806 -1.9076572293985843 0.44555836830406315 FHSS(ph)DS(ph)EEEEHKK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHSSDSEEEEHKK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 FHS(0.442)S(0.56)DS(0.998)EEEEHKK 104.41 0.0015637 780330000.0 384980.0 273430.0 142420.0 211790.0 223200.0 338370.0 290760.0 136300.0 458250.0 213980.0 True False 382907.3104552989 282530.95225807466 162471.49806316855 238602.59228468183 251623.19698995253 314979.27833730343 276694.8279889359 146471.39811737617 345320.42773540434 200323.613202505 1.9114437101742072 1.4103726851834844 0.8110451656986032 1.1910857061243252 1.2560835588343215 1.5723522219963868 1.3812392037339507 0.7311739029452798 1.723812895618669 1.0 17.6119729636966 4.650126668968219 3.643500791299572 1.1937832724516857 1.934181930141337 0.33751538916148294 0.2949147621647352 0.2608077352616778 5.695320689829306 0.07125915335641385 0.43524053265054274 44681.389360371046 -4.650126668968219 0.7403986576896513 FHTEALTALLSDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 FHTEALTALLSDDSK 15 0 B7Z7P8;P62495-2;P62495;I3L492;D6RJE8 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 184.21 4.737699999999999e-07 1603000000.0 825800.0 718880.0 667980.0 615210.0 682350.0 946210.0 819630.0 349120.0 1155800.0 711060.0 False True 821353.9845550053 742807.4862278629 762025.7778137578 693095.5229210977 769243.2278946864 880800.7298387561 779981.3656093399 375173.1071954386 870968.576926525 665679.5420309068 1.2338579341782907 1.115863473829537 1.144733658914784 1.0411849533584105 1.1555758879833073 1.3231602809236724 1.1717069796522697 0.5635941673238618 1.308390181662045 1.0 19.344468305808288 1.886569925188682 20.771283370337468 0.8985125879113085 1.1669621951265783 0.19894150041638514 0.18396531946832895 7.3694574322543795 1333.970534640215 0.07284857999233722 0.04699637613396244 77.01404336827233 -1.886569925188682 0.2684496072152698 FHTVSGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHTVSGSK 8 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 ; 131.22 0.0010143 4354900000.0 7621600.0 8189700.0 7886800.0 7448300.0 7369500.0 8520600.0 8365600.0 3603000.0 10841300.0 7037500.0 False True 7580566.152439363 8462289.213721806 8997192.886705492 8391254.016308593 8307962.142551316 7931590.977334948 7960923.968304583 3871874.1556632826 8169606.880977283 6588360.724893117 1.150599742330038 1.284430159045229 1.3656193493946027 1.2736482361391535 1.2610059602779409 1.2038792817410011 1.2083315259629674 0.5876839956613177 1.24000600788443 1.0 22.651488116763563 1.9447131353723648 14.261846748944539 0.8969955940845489 1.2589413494030834 0.43568379188937445 0.15841714913804592 2.368032643714249 609.9904072268083 0.06224909481539028 0.04003161630590322 88.04671057648095 -1.9447131353723648 0.36194575531853457 FHVDISLTDFIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 FHVDISLTDFIQK 13 0 Q15046;Q15046-2;H3BVA8 Q15046 KARS Lysine--tRNA ligase 0 ; 202.18 9.5951e-08 379490000.0 655260.0 664320.0 617580.0 552560.0 597370.0 719900.0 717460.0 321390.0 889150.0 620290.0 False True 651732.1529662302 686431.489610079 704529.8958984101 622514.0393447476 673441.5286106096 670135.0074623191 682753.718836642 345373.75378535205 670030.8964995849 580702.5611430127 1.1223166498239787 1.1820707114825826 1.213237108015616 1.0720015391690991 1.159701323316116 1.1540073219985014 1.1757373990098463 0.5947515593965066 1.153828037508126 1.0 19.147439871384552 1.7917852086290227 24.99999999607844 0.8725871563139544 1.1545475941822272 0.3795566958143871 0.13603443981076122 115.24011572655891 54143.928342399384 0.05733981576572464 0.03281971458976786 61.91347905004289 -1.7917852086290227 0.28196043786827274 FHVEEEGK ddPTM_BT-474_Trastuzumab_2h_R1 8 FHVEEEGK 8 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 ;;;;;;; 194.44 0.00016534 34858700000.0 34857500.0 28857300.0 24335900.0 23013800.0 23338570.0 35955300.0 33526400.0 15588130.0 41423200.0 28969100.0 False True 34669831.09303234 29817797.785893805 27762183.188565247 25927344.720341902 26310598.5509579 33469794.740672175 31904599.948714618 16751395.415520273 31215007.402442295 27120267.236305706 1.2783735053546996 1.0994654855751913 1.0236692340332183 0.956013614999824 0.9701452541638709 1.2341248133376208 1.176411709763839 0.6176707356738469 1.1509845065484823 1.0 24.692868058710626 7.999994497298055 0.7796602531269764 0.9868073035569821 65.81484920396736 0.18108215099254377 0.16187780949347366 735.7277539117471 2.770434557432018 0.05899954443867636 84072.5787961703 99998732.96408005 -7.999994497298055 64.82804190041037 FHVEEEGKGK ddPTM_BT-474_Trastuzumab_2h_R1 6 FHVEEEGKGK 10 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;;;;; 188.04 6.995100000000001e-07 5613290000.0 11249260.0 10398220.0 8875580.0 9391380.0 8840550.0 14527200.0 14507970.0 6312040.0 21474480.0 12547490.0 False True 11188695.234070286 10744318.466843281 10125184.516075669 10580327.745080119 9966341.640454862 13522968.857350463 13806164.065272538 6783076.47668968 16182382.147289446 11746698.445753343 0.9524970174164311 0.9146670884981778 0.8619600275629887 0.900706508636485 0.8484376854040964 1.1512144386612118 1.1753229325695111 0.5774453569242591 1.3776110983030885 1.0 23.48575199076818 2.8000029472615497 24.998744532983043 1.0028562087925699 0.8951187986228859 0.1167286755896656 0.19497770711093154 733.889816812137 298592.38278565113 0.06090756870542962 0.06460220557257508 630.9616263734899 -2.8000029472615497 -0.10773741016968397 FHVGS(ph)AESMLHVRPGGYTPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 FHVGSAESMLHVRPGGYTPQR 21 1 O75140;O75140-9;O75140-4;O75140-1;A0A2R8Y7U0;O75140-8;H0Y770;A0A2R8Y6H3;A0A2R8Y5T1;A0A2R8Y721;A0A2R8Y5K9;A0A5F9UWT1;A0A2R8Y842;A0A2R8Y6V4;A0A2R8YEW8;H7C1T0;O75140-6;O75140-5;A0A2R8Y7U6;A0A2R8Y6H8;A0A2R8Y5E9;A0A2R8YF97;A0A2R8YF50 O75140 DEPDC5 DEP domain-containing protein 5 1 FHVGS(1)AESMLHVRPGGYTPQR 251.44 4.8381999999999994e-32 273660000.0 95918.0 133180.0 115470.0 115060.0 125550.0 132820.0 113140.0 27991.0 127140.0 90247.0 True False 95401.58814549154 137612.81579098976 131727.17231676777 129626.5842026325 141538.04830684827 123638.46602464956 107666.98596322823 30079.830555417997 95808.05058871648 84487.3591956561 1.1291817977711935 1.6287976935378647 1.5591346867844875 1.534271936496948 1.6752570994564289 1.4633960299117315 1.2743561520711362 0.3560275861594754 1.1339927238919125 1.0 16.366447884376843 1.9521293311864705 6.4820563008644765 0.767366640082884 1.5059677148131023 0.6157688038304714 0.2344123026587942 0.12435368765989278 12.918176328702755 0.09653697480973085 0.06034944557882515 89.56314413563832 -1.9521293311864705 0.7386010747302183 FHVLVASQDFVESVLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FHVLVASQDFVESVLVR 17 0 O60784;O60784-4;O60784-2;O60784-3;V9GYF4;B0QY02;V9GZ68;Q6UW50;B0QY01;H7BYN7 O60784 TOM1 Target of Myb protein 1 0 220.61 3.9496e-15 86513000.0 50130.0 69765.0 53145.0 54024.0 53045.0 59783.0 62190.0 40851.0 68576.0 53912.0 False True 49860.10564996662 72087.08585116685 60627.35405537911 60863.432860794484 59799.96632765246 55650.34192404473 59181.632111129155 43899.50905717483 51676.36367132146 50471.29000361464 0.9878904550764555 1.4282790443042794 1.2012245783897562 1.2059020654402846 1.1848313431927284 1.102613821046761 1.1725801362891795 0.8697916984889993 1.0238764190021796 1.0 15.623175340725783 1.755545072282085 24.999999999919947 0.9571909314419895 1.1912622082642295 0.45428263682320147 0.10955260445476378 5.148768325918606 7587.055694319165 0.04850737625472567 0.02690007232980935 56.95673323331808 -1.755545072282085 0.23407127682223994 FICEQDHQNFLR ddPTM_BT-474_Trastuzumab_2h_R1 6 FICEQDHQNFLR 12 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ;;;;; 269.44 2.2661e-22 9790450000.0 3134610.0 3662610.0 3579720.0 3525770.0 3195530.0 3557260.0 3597120.0 3137390.0 4245900.0 3892110.0 False True 3117733.608047908 3784517.7597555 4083713.460515978 3972132.120494653 3602461.804109778 3311354.9890893237 3423113.563267167 3371517.973143613 3199554.8371451264 3643712.2075969856 0.8556476006934811 1.0386434339860708 1.1207563133009266 1.0901333294690305 0.988679017129508 0.9087860951765864 0.9394577201048206 0.9252975485040067 0.8781030594222535 1.0 21.796977584153215 2.9521327911945128 4.710569719941398 0.9274507040559622 1.0347983010345694 0.28484711017469055 0.07131388495836616 0.25157436705899255 12.353017891137563 0.0223979353652299 0.024554706634108994 895.6385768473083 -2.9521327911945128 0.10734759697860718 FIDFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 FIDFFK 6 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 121.68 0.045473 1095440000.0 1100870.0 1157260.0 1063130.0 983890.0 943850.0 1066670.0 1150370.0 1076180.0 1445980.0 1112730.0 False True 1094943.038238154 1195778.6995215584 1212809.4631083861 1108450.3731194856 1064043.7028627542 992933.6135710955 1094722.2082598445 1156490.0163313108 1089637.6041393129 1041714.6187439184 1.051096930518665 1.147894709362347 1.1642434898060383 1.0640633751075088 1.021434934018455 0.9531723906959834 1.0508849434980971 1.1101793096901977 1.0460039482340944 1.0 19.99052866986425 3.543466804136685 5.714697867740814 1.0388559241413993 1.1232380754690572 0.4219812083103094 0.04685187743485936 0.24496488155745288 15.422506245818843 0.0139430011810658 0.021550077086427567 3495.157928835432 -3.543466804136685 0.08438215132765792 FIDFFKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FIDFFKR 7 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 86.866 0.031687 132670000.0 244590.0 382160.0 378350.0 361120.0 248760.0 266730.0 361670.0 257400.0 630290.0 369290.0 False True 243273.15461650345 394879.96457940195 431618.3913228469 406837.7549735325 280438.1114839631 248291.5829148828 344174.64038642985 276608.495050716 474963.4749532957 345721.59603492456 0.70366779919623 1.1421906213215314 1.2484565508000405 1.176778539841156 0.8111674674081785 0.7181836071640736 0.9955254295183271 0.8000902987349774 1.373832240741233 1.0 18.399251201032058 4.756550540888352 23.066054040961387 1.0072580596699914 0.7036670492170879 0.18379309057843762 0.201152115525244 2478.6535572424928 3177890.8398327436 0.050299129195794275 1.422028055226169 57088.75091666222 -4.756550540888352 -0.3035910104529035 FIEEHATK ddPTM_BT-474_Trastuzumab_2h_R1 8 FIEEHATK 8 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;;;;;;; 152.63 0.00045401 13104070000.0 11100540.0 13108620.0 12189900.0 11502860.0 11162450.0 13488520.0 14520260.0 12316210.0 17513050.0 13133990.0 False True 11040775.926025933 13544932.49237186 13906131.963489814 12959120.896585181 12583921.842475327 12556090.360960726 13817859.55102017 13235308.13064717 13197193.490347024 12295767.513625424 0.8979330419017124 1.101593087000237 1.1309690060486164 1.0539497336969545 1.023435245382656 1.0211717444272452 1.1237899167911278 1.076411709637532 1.0733118917320692 1.0 23.55165845636729 2.2710019009693574 24.99746237416163 1.076676209253281 1.0453228618177646 0.03731184437847057 0.06439912163590879 660.4100974739674 508872.7142803465 0.02226865990032324 0.018630262958895652 186.63878602646633 -2.2710019009693574 -0.03135334743551632 FIEIAAR ddPTM_BT-474_Trastuzumab_2h_R1 8 FIEIAAR 7 0 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;A0A1W2PPE9;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;;;; 198.32 0.00093559 3825820000.0 3319538.0 4473492.0 4037202.0 4437281.0 4097511.0 4135891.0 4009949.0 3245105.0 4275716.0 3906685.0 False True 3301665.976243347 4622389.476936979 4605604.949611146 4999040.319635327 4619304.737999537 3849986.5900101922 3815972.447377239 3487271.2134093023 3222023.0834590513 3657357.018618694 0.9027464257482624 1.2638606112024462 1.2592713607572785 1.3668450452571235 1.2630171772905425 1.0526690641386305 1.0433688666299388 0.9534948859672361 0.880970347454879 1.0 21.802370033807733 2.4172301845305935 2.002660054182956 0.956010314682976 1.2237460312053767 0.47497670432288497 0.11989058985142031 0.28111335912866203 2.3009612397287333 0.05237673772881044 0.04052239664913897 261.3546217742486 -2.4172301845305935 0.2677357165224007 FIFDVGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 FIFDVGTR 8 0 O75909;G3V5E1;O75909-1;O75909-4;G3V2Q3;O75909-2;G3V235 O75909 CCNK Cyclin-K 0 78.324 0.071936 82417000.0 366500.0 433850.0 427740.0 382810.0 391050.0 416030.0 417220.0 359280.0 497110.0 392200.0 False True 364526.8047219782 448290.43498213665 487962.0740172702 431273.70674960595 440847.8995650576 387270.82532927947 397037.4746648223 386091.29798687325 374603.90143272653 367169.4602206866 0.992802627165342 1.2209360623639351 1.328983281245617 1.1745903553372592 1.200666033880069 1.0547468329651135 1.0813466741656115 1.0515343453532702 1.0202479836083629 1.0 18.486086540213396 2.7278079284877066 8.09816390797627 1.0484120191189592 1.193323338164441 0.437017234954454 0.08003112766222475 0.15701688507577832 81.78281165752045 0.02586121668916593 0.025293102402751698 534.3279946995847 -2.7278079284877066 0.14491131904548182 FIGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 FIGSPR 6 0 P23443-5;P23443;P23443-3;P23443-2;P23443-4;K7ERJ3 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR 102.0 0.037671 12476000000.0 8565100.0 10416710.0 9554540.0 9757000.0 9242330.0 10168050.0 10376360.0 8483220.0 11151890.0 9805800.0 True False 8518986.453272076 10763423.895315835 10899736.182449566 10992235.199592257 10419285.941918222 9465156.63651511 9874415.825255457 9116280.95331831 8403656.137170047 9179985.448832244 0.9279956379839087 1.1724881216108045 1.1873369781687493 1.1974131397986632 1.135000267701255 1.0310644487698117 1.0756461304098854 0.993060501471488 0.9154324028083344 1.0 23.130060436153432 2.0468598658099317 1.19954144427762 0.9603208943346042 1.1304238625775553 0.3986839643604174 0.07783019046932328 0.46053936242882204 1.2320680240250605 0.05725459773282859 0.02760065307210552 111.39350411769648 -2.0468598658099317 0.17010296824295112 FIHQQPQSS(ph)SPVYGSSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 FIHQQPQSSSPVYGSSAK 18 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 FIHQQPQS(0.003)S(0.776)S(0.222)PVYGSSAK 217.82 5.287e-19 483700000.0 323320.0 348730.0 315990.0 314450.0 300340.0 371990.0 337120.0 308890.0 409050.0 396540.0 True False 321579.2810442288 360337.2672382637 360478.645365683 354259.33775871556 338586.5187453508 346275.2068702709 320812.21767653764 331940.94031163806 308245.1084891806 371232.4777050259 0.8662477028740719 0.9706512465339324 0.9710320810134299 0.9542789465748283 0.9120606064386022 0.9327718550137588 0.8641814413970772 0.8941592135572574 0.830329044470366 1.0 18.50196340627708 2.5545852973664696 1.9994711459744468 0.8888566593253829 0.941722954947922 0.0881679687040603 0.0502415090768876 0.5547041316019009 4.44090239723482 0.01891974512577547 0.01635403885611467 358.5793679425324 -2.5545852973664696 0.05286629562253908 FIHQQPQSSS(ph)PVYGSSAK ddPTM_BT-474_Trastuzumab_2h_R1 5 FIHQQPQSSSPVYGSSAK 18 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 FIHQQPQS(0.006)S(0.074)S(0.919)PVYGSSAK;FIHQQPQSS(0.088)S(0.912)PVYGSSAK;FIHQQPQS(0.004)S(0.298)S(0.698)PVYGSSAK;FIHQQPQSS(0.033)S(0.966)PVYGSSAK;FIHQQPQSS(0.001)S(0.999)PVYGSSAK 258.03 7.7694e-31 11663790000.0 7670860.0 7200000.0 7100450.0 6723950.0 6818040.0 8101760.0 8273690.0 6943240.0 8964780.0 8030010.0 True False 7629560.942072659 7439647.647508091 8100131.6417822195 7575201.380577877 7686276.980310832 7541704.400691646 7873460.006134881 7461379.825858325 6755530.090897546 7517527.886962556 1.014902911807537 0.9896401795077434 1.077499380591598 1.0076718695936389 1.0224474183382721 1.0032160191611685 1.0473469635928598 0.9925310471808682 0.898637183988832 1.0 22.8418268839436 1.4634055568594346 5.945522027642215 0.9473873523780747 1.0222781849469336 0.450150754406653 0.032483371778246985 0.12489018702766855 10.200108891853809 0.01827787742188148 0.00760498109246525 29.06735782157104 -1.4634055568594346 0.07489083256885887 FIIGSVSEDNS(ph)EDEISNLVK ddPTM_BT-474_Trastuzumab_2h_R1 6 FIIGSVSEDNSEDEISNLVK 20 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087X2F8;A0A087X126;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 FIIGSVS(0.009)EDNS(0.991)EDEISNLVK;FIIGS(0.006)VS(0.168)EDNS(0.827)EDEISNLVK;FIIGS(0.021)VS(0.178)EDNS(0.801)EDEISNLVK;FIIGS(0.005)VS(0.363)EDNS(0.631)EDEISNLVK;FIIGSVSEDNS(1)EDEISNLVK;FIIGSVSEDNS(1)EDEISNLVK 216.15 7.3833e-25 1116936000.0 1178194.0 1065594.0 982984.0 924130.0 965380.0 1282199.0 1275599.0 1093614.0 1452332.0 1314640.0 True False 1171850.7344136585 1101061.6521248254 1121379.6029499047 1041124.7632468154 1088315.420744447 1193563.6011017894 1213893.4031086059 1175225.0299393681 1094424.2388517507 1230738.54968007 0.9521524573340785 0.8946348941544456 0.9111436407362123 0.8459349579303056 0.8842783229852954 0.969794601308341 0.9863129772153126 0.9548941407944582 0.8892418614304768 1.0 20.231092886677477 2.7382507046930846 24.998752540745098 0.9593019769239174 0.8953414605269412 0.4190279938104432 0.036694633116477415 28.317652945627437 2284120.2270806767 0.011706567585968957 0.011686588308477032 547.3318293523268 -2.7382507046930846 -0.0639605163969762 FIIHAPPGEFNEVFNDVR ddPTM_BT-474_Trastuzumab_2h_R1 4 FIIHAPPGEFNEVFNDVR 18 0 P47755;F8W9N7;C9JUG7;A0A0D9SET8;P47755-2 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 0 ;;; 208.13 6.658199999999999e-16 2689804000.0 794896.0 937835.0 858243.0 910225.0 826309.0 929423.0 878268.0 787066.0 963610.0 897748.0 False True 790616.3682572481 969050.2710417717 979076.1544181155 1025459.3916725275 931534.5532328439 865174.175636408 835782.8215304255 845800.8615601654 726141.2272124658 840452.9540392677 0.9407027061508892 1.1530095365653217 1.1649386794497136 1.2201270597528484 1.1083720376682984 1.0294141646814716 0.9944433147787781 1.006363125378042 0.8639879528325615 1.0 19.680807538545647 2.4987490075696748 1.8586332760169904 0.9665740176449772 1.1287416161965997 0.4616911338155022 0.07715967567604665 0.31472076956333156 2.1989840914738608 0.033215009448091325 0.027084292517701034 315.3181773837404 -2.4987490075696748 0.16216759855162255 FIKDNWEELYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 FIKDNWEELYNR 12 1 E9PLK3;P55786;P55786-2;H0YDG0 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ; 180.28 1.7909e-05 1524450000.0 1529820.0 1909180.0 1697490.0 1689890.0 1493940.0 1870370.0 2003800.0 1595670.0 2192740.0 1989620.0 False True 1521583.619098979 1972725.902176321 1936481.8371524236 1903829.900731675 1684184.4037238783 1741075.724277397 1906868.5387406442 1714746.998048079 1652368.608210651 1862640.7482006173 0.8168959154194857 1.0591016566571145 1.039643226437057 1.0221133101328574 0.9041917532142821 0.9347351205321494 1.0237446703465243 0.9205999598712691 0.8871107377023201 1.0 20.828918014527957 3.2473208145265042 24.96403345127624 0.9446817596966014 0.993714795049665 0.05945877884561279 0.07307533479962829 471.90948630516255 1344797.269938063 0.02000763504526658 0.0266832490807901 1767.3428796404248 -3.2473208145265042 0.04903303535306358 FIMILTEHLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FIMILTEHLVR 11 0 Q09161;X6R941 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 ; 230.65 1.641e-12 141131000.0 203253.0 243090.0 228740.0 217043.0 191331.0 205876.0 224670.0 176442.0 271060.0 212730.0 False True 202158.708431531 251181.103698992 260944.6037562786 244520.62154607964 215695.86874231463 191644.27669997522 213801.8537772534 189608.9979943218 204260.89501791282 199153.38927268426 1.015090474582543 1.261244433832208 1.3102694596826006 1.2278004529025504 1.0830640117652235 0.9622948291257678 1.0735536791920333 0.9520751752545165 1.0256460900006843 1.0 17.603520506713785 3.075481956134662 3.5513976931923477 1.0025367908438334 1.2150366551686786 0.5906584587569657 0.07844336072475135 0.15550392889369904 3.925576003529272 0.023692657554559494 0.028509595628558107 1189.821893965896 -3.075481956134662 0.21249986432484524 FINDQYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FINDQYEK 8 0 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4;K7EL40;K7EK18;K7EIE4;K7EQD7;K7ER52;K7ELJ9 Q9UHD8 SEPT9 Septin-9 0 171.73 0.00066923 99611000.0 73840.0 87477.0 87951.0 73278.0 83431.0 88577.0 93558.0 72119.0 110440.0 82895.0 False True 73442.45364439528 90388.61906403692 100333.73631620374 82554.9872866373 94055.44331572021 82453.88047782994 89032.24211373244 77500.88599286173 83223.54182018123 77604.57013001991 0.9463676368717544 1.164733196931552 1.2928843771456116 1.0637902786952287 1.2119833040520456 1.0624874326303904 1.147255141862991 0.998663942896862 1.072405164808557 1.0 16.243853994716652 1.7495287926707783 10.496171486571171 1.027708454676609 1.1332515859084145 0.21393410461530793 0.09013942943606147 0.16615575001129562 92.86648241717819 0.041495478003567836 0.022617417709038252 56.17315185583711 -1.7495287926707783 0.10554313123180536 FINYVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FINYVK 6 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 ; 130.84 0.036268 2519900000.0 2391600.0 2585500.0 2357600.0 2166600.0 2092700.0 2457300.0 2537700.0 2407800.0 3136200.0 2467900.0 False True 2378723.891331742 2671556.8045322425 2689529.5873734467 2440891.3378534983 2359192.9405953125 2287432.634862001 2414941.7560445843 2587482.2625606633 2363325.5329269515 2310396.5091245123 1.0295738770108864 1.1563196161270977 1.1640987063266472 1.05648157284415 1.0211203710177397 0.9900606349724737 1.0452499155479107 1.1199299567593046 1.0229090649996246 1.0 21.139709036834784 3.5884951138970664 6.499964189098466 1.0430842373732068 1.1202147739224873 0.36726257812525287 0.047883640778596 0.28713430603137907 14.698900460180289 0.013638571422146695 0.021198957010486318 3876.9938660884945 -3.5884951138970664 0.07713053654928048 FIPHENGVHTIDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FIPHENGVHTIDVK 14 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 ; 191.19 2.9896e-07 763770000.0 1043690.0 965830.0 862410.0 836090.0 799750.0 1094330.0 1184840.0 478980.0 1452660.0 981260.0 False True 1038070.8890048609 997977.0676934357 983829.8317979011 941938.9082737599 901593.4220103698 1018681.5428757315 1127524.7626716574 514723.9198111578 1094671.407646727 918635.1467010482 1.1300143400050866 1.0863693505275906 1.0709690733377406 1.0253678096863579 0.9814488649254519 1.1089076512410443 1.2273912735875194 0.5603137672879226 1.1916280490441178 1.0 19.809132456124665 FIQELSGSS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FIQELSGSSPKR 12 1 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 FIQELS(0.001)GS(0.125)S(0.874)PKR 93.909 0.0042307 123460000.0 76145.0 68382.0 61505.0 62832.0 62311.0 73713.0 80006.0 75169.0 123160.0 84401.0 True False 75735.04378050478 70658.0535322081 70164.36938895633 70786.52475768983 70245.9365037676 68617.39381173758 76135.80412739988 80778.4924804478 92808.8682594487 79014.45592066855 0.9584960485780433 0.8942421068259917 0.8879940837585744 0.8958680273488225 0.8890263899848321 0.8684156970039794 0.9635680362570759 1.0223254914461521 1.1745808685012007 1.0 16.269829002170308 1.7318360894940554 2.273184028028069 1.0873034777714794 0.8991218427013764 0.7150250427128952 0.04726264154312087 0.1296647830947444 1.3920281545923154 0.029010528105781315 0.01241873248520848 53.93070399759173 -1.7318360894940554 -0.188181635070103 FIQENIFGICPHMTEDNKDLIQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FIQENIFGICPHMTEDNKDLIQGK 24 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 318.17 5.911899999999998e-74 2101930000.0 1163080.0 1176310.0 1349530.0 1473120.0 1369940.0 1715410.0 2038630.0 1556860.0 2839400.0 1729900.0 False True 1156818.1065103365 1215462.7672555898 1539532.093674961 1659616.8409576053 1544393.7387294609 1596827.7443407923 1940013.6785771246 1673040.798774894 2139667.9160107058 1619496.3009580967 0.714307347183171 0.750519014175284 0.9506240259790475 1.0247734681306608 0.9536259748267377 0.9860027117049334 1.1979117688811078 1.0330624390961067 1.3211934567216206 1.0 20.627113742245477 4.783863268694477 0.45942726094182007 1.1326317374194355 0.34768224907385314 0.6687340624394109 0.09838904291511572 2.8858152674302033 0.4598323094857932 0.0642826300267484 1.2544408101011315 60794.35689487191 -4.783863268694477 -0.7849494883455823 FIQENVFVAANHNGS(ph)PLSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 FIQENVFVAANHNGSPLSIK 20 0 P11172-2;P11172-3;P11172;P11172-4;E9PFD2 P11172-2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 1 FIQENVFVAANHNGS(1)PLSIK 128.06 1.3142e-05 428180000.0 154160.0 167430.0 157930.0 154960.0 154410.0 181220.0 187700.0 217250.0 239710.0 221000.0 True False 153330.01968878612 173002.80633642772 180165.17124783166 174577.92011159306 174073.19824022657 168692.68794599432 178620.2339163684 233462.29817314682 180636.6824494352 206895.59079238086 0.7410985371972106 0.8361841142861065 0.8708023721425118 0.8437971995584068 0.8413576991832008 0.8153517786431561 0.8633351403588552 1.1284063487241038 0.8730813535349993 1.0 17.65854337430004 1.9180925465510057 7.97476986673757 1.0112675532463076 0.8298393562067364 0.5884430468432063 0.06564129438878562 0.19461559273737125 17.166434403239208 0.026446155656061704 0.01657610975383062 82.81186139310603 -1.9180925465510057 -0.18142819703957114 FISADVHGIWSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FISADVHGIWSR 12 0 A0AVT1;A0AVT1-4;A0AVT1-3 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ; 138.42 7.471e-05 919040000.0 588410.0 747240.0 722250.0 726050.0 654540.0 692290.0 738590.0 627990.0 758540.0 778690.0 False True 585242.065938497 772111.4316838809 823936.5220904603 817967.8555564157 737891.7892374706 644433.6217753697 702861.5800122026 674853.8026686059 571607.9809152508 728993.3375299501 0.80280852486454 1.0591474461207395 1.1302387548317059 1.1220512087640446 1.012206492500564 0.8840048167777579 0.9641536401329952 0.9257338413478712 0.7841059053461744 1.0 19.475546103863614 2.851045476584392 4.97503557285084 0.9133800535439306 1.0409718538900619 0.24137251447004415 0.09980330403554491 0.3173190790302792 11.844829839904243 0.03125150850169658 0.03327779743106467 709.6520743710533 -2.851045476584392 0.12759180034613127 FISDKDASIVGFFDDSFSEAHSEFLK ddPTM_BT-474_Trastuzumab_2h_R1 4 FISDKDASIVGFFDDSFSEAHSEFLK 26 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;; 370.0 8.4347e-127 8028588000.0 2206078.0 2370895.0 2392996.0 2188085.0 2184495.0 2793868.0 3145172.0 2748960.0 3885990.0 2895237.0 False True 2194200.721166309 2449808.806838707 2729909.0365059 2465096.3366505904 2462677.489733718 2600734.4812178505 2993028.014636184 2954101.3541360404 2928339.8340982078 2710460.495922894 0.8095306035512604 0.9038349057378765 1.007175363969429 0.9094751022413411 0.9085826904461827 0.9595175746445688 1.104250742314205 1.0898891013462966 1.0803846204373944 1.0 21.370106549591707 2.369258516155874 4.06515645406986 1.0783467404252758 0.9146046014247416 0.6782800762224142 0.05198792785877239 0.12809177831466173 3.89490751279208 0.019103905034383393 0.015697763375912093 234.02298587060903 -2.369258516155874 -0.16374213900053414 FISETLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 FISETLRR 8 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 141.52 0.0021048 0.0 61130.0 80406.0 65326.0 72604.0 68574.0 65148.0 62869.0 55274.0 84342.0 56842.0 False True 60800.88287218145 83082.2651035465 74523.33297622904 81795.6589557442 77306.49243005831 60644.47210189624 59827.786287097275 59398.826555684835 63557.04422489797 53214.29489511543 1.142566729335023 1.5612771956727112 1.40043823042499 1.5370993661940313 1.4527392044267096 1.1396274670448152 1.1242803537097867 1.1162193668592062 1.1943603565577245 1.0 15.699526226855898 2.7237622385936695 7.766201960330638 1.121759782150138 1.4324516278211876 0.6326207039921083 0.11551824116156942 0.10752831949836404 40.9677038666235 0.03482404193003909 0.033854403300485725 529.373550594174 -2.7237622385936695 0.3106918456710497 FITEIWHPNVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FITEIWHPNVDK 12 0 P62253;K7EPR7;I3L2H7 P62253 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed 0 ; 114.82 0.0010168 718970000.0 1370360.0 1369260.0 1456070.0 1295290.0 1154470.0 1605960.0 1618220.0 1235710.0 1887000.0 1530370.0 False True 1362982.1340213101 1414834.9913648495 1661071.9996126788 1459273.5811909253 1301484.9114202089 1494943.765223204 1539940.5163992825 1327924.9550082372 1421974.134504544 1432700.4763843243 0.9513378103014519 0.987530202359839 1.1593993489865313 1.0185475647175486 0.9084138191289911 1.0434447324230405 1.0748516816896703 0.9268685094315688 0.9925132000326754 1.0 20.450305597345768 1.7304537038558803 24.99999971030376 0.968580502101054 1.0210740074847846 0.09456792360000754 0.06671826209239613 1.7194202490323363 5271.893241464741 0.03200889939192113 0.017750619080923923 53.759312220462995 -1.7304537038558803 0.052493505383730654 FITHAPPGEFNEVFNDVR ddPTM_BT-474_Trastuzumab_2h_R1 7 FITHAPPGEFNEVFNDVR 18 0 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 ;;;;;; 238.94 6.725699999999999e-24 7990567000.0 2320814.0 2813248.0 2615976.0 2783234.0 2510511.0 2869812.0 2701543.0 2411835.0 3043386.0 2753409.0 False True 2308318.9952906757 2906885.259035674 2984282.6823289916 3135591.1390285874 2830209.6948854933 2671428.6512507973 2570859.04419354 2591818.3747499725 2293384.2995830704 2577684.0803079573 0.8955011255742789 1.1277119959123878 1.1577379497849316 1.216437329532631 1.0979660837829928 1.0363677502836735 0.9973522604393001 1.0054833307735394 0.8897072830232472 1.0 21.297644027864035 2.411725376090344 1.8396349793085884 0.9713509129571334 1.1101380952263435 0.3366124726938363 0.08309282203962087 0.4043529879178184 2.7889634104069163 0.03829673409454271 0.028849802708903156 258.06278276821035 -2.411725376090344 0.13878718226921016 FITIFGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 FITIFGTR 8 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ; 133.9 0.0020928 397880000.0 456420.0 491540.0 385850.0 359840.0 340330.0 412000.0 340910.0 337880.0 533020.0 438230.0 False True 453962.6854330293 507900.6117577956 440174.3261316776 405395.70710477326 383669.0082060505 383519.40974368 324418.88089733175 363094.32131987537 401664.36310207314 410261.78621242096 1.1065195460295232 1.2379915186515087 1.072910860637088 0.9881390875992331 0.9351809529913139 0.9348163115175084 0.7907606601443441 0.885030810868347 0.9790440557729734 1.0 18.646185255259187 3.708012944613364 1.5283953132629573 0.9019977741631975 1.1757879234777568 0.7046441086969798 0.06403851992428103 0.1998646820372928 0.9032499721011654 0.01945465336339516 0.045033960557080414 5105.202163518628 -3.708012944613364 0.27379014931455936 FITLLLPGGAQTAVRPGS(ph)PSTSTMR ddPTM_BT-474_Trastuzumab_2h_R1 1 FITLLLPGGAQTAVRPGSPSTSTMR 25 1 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 1 FITLLLPGGAQTAVRPGS(0.771)PS(0.167)T(0.036)S(0.024)T(0.002)MR 193.97 1.5397e-18 700460000.0 533870.0 622040.0 598910.0 566430.0 623330.0 531680.0 621010.0 621890.0 692090.0 641920.0 True False 530995.7032385337 642744.22536888 683231.3221809587 638139.9799226243 702707.3807336333 494926.21304009645 590969.373811422 668298.5896934343 521533.6930308697 600952.1160246386 0.8835907039501351 1.069543160311508 1.1369147457215154 1.0618815757634523 1.1693234152865897 0.8235701312012766 0.9833884565058968 1.112066289264941 0.8678456720992512 1.0 19.196890515746066 2.7628729139669885 24.975117687666927 0.9786588430635705 1.0684499968755101 0.20173208633937123 0.1018271170901139 1528.9635805411015 1570644.9062669699 0.03190139946126177 0.03382040393830415 579.2591650962923 -2.7628729139669885 0.08979115381193958 FITLLLPGGAQTAVRPGSPS(ph)TSTMR ddPTM_BT-474_Trastuzumab_2h_R1 1 FITLLLPGGAQTAVRPGSPSTSTMR 25 1 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 1 FITLLLPGGAQTAVRPGS(0.3)PS(0.572)T(0.099)S(0.025)T(0.004)MR 213.19 2.8997e-26 559910000.0 542260.0 633010.0 536150.0 611800.0 597700.0 537260.0 590650.0 586960.0 588470.0 628870.0 True False 539340.5324107492 654079.3551873752 611635.259700659 689253.8172707324 673813.5521545465 500120.48077400366 562078.0029978844 630761.9357224868 443449.45359400567 588734.978197306 0.9161007114987434 1.1109911580082301 1.0388974366250041 1.1707369916786885 1.1445108191426798 0.8494832128122605 0.954721604479753 1.071385188720851 0.7532242350400828 1.0 19.167258818704937 2.7467310821075417 24.98461760640053 0.9442771156986066 1.0813520517429431 0.33893250140710596 0.1033563076720238 790.9206367367161 2418570.862690421 0.03187467500181255 0.033291281260711354 558.1244934981456 -2.7467310821075417 0.13707493604433652 FIVLNSLNQNAKPEGPEQAELGRLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 FIVLNSLNQNAKPEGPEQAELGRLSPR 27 2 P41182-2;P41182 P41182-2 BCL6 B-cell lymphoma 6 protein 1 FIVLNSLNQNAKPEGPEQAELGRLS(1)PR;FIVLNSLNQNAKPEGPEQAELGRLS(1)PR 260.53 2.5228e-53 745480000.0 690510.0 819420.0 778400.0 780530.0 772820.0 976870.0 941250.0 835540.0 1242710.0 939330.0 True False 686792.3708828724 846693.8993501494 887991.9540259124 879345.0179704567 871234.0461369862 909341.2762046315 895718.1415758221 897892.2375861498 936460.7719608605 879381.1551991267 0.7809950973163114 0.9628292513937536 1.0097918846405527 0.9999589060688232 0.9907354063548296 1.0340695508749227 1.0185778217785393 1.0210501240304968 1.0649088468910943 1.0 19.746129090917243 4.98987184214122 1.5079618276852769 1.0193854383810512 0.5471870915018441 0.9279277668077398 0.01978586953931968 0.5058162405291551 0.6607597129707256 0.005303888091308864 0.42489842971019554 97694.88862937536 -4.98987184214122 -0.47219834687920714 FKAEAPLPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 FKAEAPLPSPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK 116.87 0.00056342 34409740000.0 45165890.0 34451520.0 31879780.0 27067140.0 26447910.0 42810580.0 39652740.0 32328530.0 52972490.0 34810680.0 True False 44922721.86664212 35598218.016816355 36368175.919984795 30493837.14874361 29815894.569455776 39851185.369865485 37734585.4780231 34741049.069549054 39918129.63449952 32589032.59947746 1.3784613498273164 1.0923373655892794 1.1159636546120713 0.9357085717614262 0.9149057885791262 1.2228403911107342 1.1578921639615698 1.0660349908670226 1.2248945872403583 1.0 24.957883190738727 4.7416911167522695 4.898887655857257 1.0809151421934902 1.3947019384983217 0.4350514274236238 0.10170937391597677 0.17568241930850326 12.614990932299635 0.025112533351537323 0.18793429121115796 55168.492486531475 -4.7416911167522695 0.31378679630483153 FKDDVMPATYCEIDLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 FKDDVMPATYCEIDLDK 17 1 Q9HD45;Q5TB53 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 ;; 187.33 4.3131e-10 299390000.0 449790.0 496790.0 484620.0 392060.0 414950.0 539790.0 542080.0 457318.0 825260.0 508870.0 False True 447368.3806163667 513325.35483410355 552850.2836074479 441694.755801183 467791.4228986594 502475.58782898256 515857.5194533026 491445.3913737508 621885.7309174468 476393.48093447415 0.9390732630069307 1.077523885984303 1.1604908667578724 0.9271637280484453 0.9819433758435542 1.0547490843983567 1.0828391657279135 1.0315955424279766 1.3054035283975358 1.0 18.861794145640822 FKDHVEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKDHVEGK 8 1 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 94.85 0.006048899999999999 659430000.0 1778200.0 1624000.0 1499400.0 1410100.0 1519700.0 2192000.0 1936400.0 1825400.0 2763300.0 2011100.0 False True 1768626.3687765938 1678053.8582712694 1710502.4869815684 1588618.515419189 1713224.7870323965 2040472.1994129773 1842728.9342336466 1961620.6171933857 2082321.741322952 1882749.8762106667 0.9393846687358363 0.8912781668314962 0.9085128665227834 0.8437756578778993 0.9099587835217569 1.0837723189868171 0.9787433569999385 1.0418912474669546 1.1060002008944254 1.0 20.844409919611376 2.805551976634692 6.5188617436709775 1.0389565877592155 0.8947293566641954 0.755965676728566 0.04074708028805142 0.11619668415209156 9.276464230765392 0.012266329479909674 0.012993891536278116 639.0752176925588 -2.805551976634692 -0.14422723109502011 FKDIFQEIFDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKDIFQEIFDK 11 1 P48735;P48735-2;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ; 217.09 1.0583e-11 1406280000.0 2582300.0 2373600.0 2720900.0 1903920.0 2385700.0 4898900.0 2886700.0 2259100.0 4622900.0 3159100.0 False True 2568397.1837204997 2452603.8411285025 3103979.069513237 2144956.0767866825 2689504.753848249 4560250.573770181 2747059.292735115 2427685.513477362 3483648.2386863083 2957483.533358421 0.8684400622186769 0.8292874037893311 1.0495338467661595 0.7252639119011225 0.9093895954153076 1.5419360825964465 0.9288502410073083 0.8208618868354484 1.1779095975998188 1.0 21.49593870529134 2.9757780518750065 24.980604118301407 1.0652714389826543 0.87069055924414 0.23439621531222354 0.19425673416946954 1354.105578493396 1396518.797032384 0.06242451067467293 0.06653835951865758 945.753706205849 -2.9757780518750065 -0.19458087973851435 FKDIFQEIYDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKDIFQEIYDK 11 1 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ; 192.15 1.3859e-06 7064400000.0 8043200.0 7585400.0 7694400.0 6562800.0 6482100.0 7728800.0 8925400.0 8204300.0 13075300.0 8553500.0 False True 7999896.30488352 7837875.453528873 8777704.639076276 7393649.807100948 7307557.012583204 7194526.247638229 8493644.303660909 8816546.526591264 9853067.515043596 8007608.306980233 0.9990369156680666 0.978803551954033 1.096170579600497 0.923328105428921 0.9125767310837626 0.8984613097729518 1.060696774623329 1.1010212024114465 1.2304632216406834 1.0 22.93293997564122 2.0102509441470553 4.055840892142926 1.1154176973490346 0.9697007839160254 0.43376983600342 0.07392383809188036 0.20162068405080058 7.55416392677828 0.03274412786191719 0.021092200934623207 102.3884442555129 -2.0102509441470553 -0.1457169134330092 FKDLEDK ddPTM_BT-474_Trastuzumab_2h_R1 4 FKDLEDK 7 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ;;; 127.46 0.0035135 3695940000.0 7926460.0 6201770.0 5730230.0 5287500.0 5358950.0 8417540.0 8204620.0 7578950.0 13006500.0 8147310.0 False True 7883784.820072499 6408192.165400871 6536996.575947975 5956896.957860406 6041380.517514815 7835655.272557814 7807731.185907913 8144529.734128299 9801222.353170823 7627341.70053697 1.033621559070505 0.8401606243692649 0.8570478198830093 0.7809925386509216 0.7920689480962283 1.0273114251595912 1.0236503742002596 1.0678071147061523 1.2850115725745983 1.0 22.862748902440767 2.3704346531267433 1.7527955114495113 1.111278301159537 0.8568729106333933 0.5594579177345274 0.09775219520625011 0.26285996474411305 1.6428680878921567 0.046210889180194024 0.0330203246404122 234.65761544663218 -2.3704346531267433 -0.25440539052614375 FKDPGLVDQLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKDPGLVDQLVK 12 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 119.01 0.00051369 881920000.0 1153680.0 1118610.0 1037760.0 1006440.0 983500.0 1390060.0 1174450.0 1149160.0 1721170.0 1253530.0 False True 1147468.7150658972 1155842.2576359755 1183867.5876283778 1133855.2008073814 1108742.8953387903 1293968.4240492727 1117637.3666653102 1234916.154516241 1297010.715996391 1173528.6421989743 0.9777935312390453 0.9849288854766615 1.008810134714761 0.9661930352911947 0.9447940642174804 1.1026304578511323 0.9523733179371454 1.0523101951753286 1.1052228887792923 1.0 20.16242162333195 2.7578397113633244 24.995307271254116 1.0387192319909722 0.97819394661681 0.3520214185167104 0.04459746661630518 1011.9925207593172 1312044.7568043524 0.013351219273189056 0.014143533642216648 572.5846634511817 -2.7578397113633244 -0.06052528537416213 FKDPNAPK ddPTM_BT-474_Trastuzumab_2h_R1 4 FKDPNAPK 8 1 P09429;Q5T7C4;B2RPK0;P23497 P09429;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 0 ;;; 95.358 0.0088526 14359550000.0 18757600.0 16682200.0 15910400.0 14078700.0 13638700.0 20970300.0 21069400.0 20164200.0 30112400.0 20506200.0 False True 18656611.165765256 17237456.94239713 18150446.0243241 15861061.976478385 15375507.602091687 19520672.519776445 20050192.629075833 21668954.9957329 22691602.505487386 19197476.759758927 0.9718262144154582 0.897902216948098 0.9454599816143767 0.8262055568534811 0.800912942596773 1.0168353249784883 1.0444181222349147 1.128739743608108 1.1820096354044154 1.0 24.194413365501543 2.39455635707513 2.4871714123579927 1.1059387955188975 0.8895962295549769 0.6655898435169664 0.06657587422014054 0.1641963172833356 2.0782212121638994 0.026796840962206775 0.021286120727718665 248.05978164481922 -2.39455635707513 -0.21634256596392065 FKDPNCVGTVLASRPHTLDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FKDPNCVGTVLASRPHTLDGR 21 2 K7EQ55;K7EK33;Q96EP5;Q96EP5-2;K7EQ02 K7EQ55 DAZAP1 DAZ-associated protein 1 0 ; 156.58 8.217200000000001e-09 5242900000.0 1117530.0 1295780.0 1269180.0 1229200.0 1134400.0 1325130.0 1301010.0 1111600.0 1568540.0 1317240.0 False True 1111513.342649255 1338909.25398445 1447869.5120896783 1384816.5939672848 1278859.1158844172 1233526.882120491 1238075.1759591615 1194553.2365904266 1181994.3343591713 1233172.615454098 0.9013444903980099 1.0857435830193294 1.1741012522861785 1.122970601692567 1.03704793624005 1.0002872806790821 1.0039755671214432 0.9686829091242427 0.9584986882991389 1.0 20.233943326915284 2.827233384815607 2.608011829175563 0.9825786471759838 1.07916019063933 0.25905007510692046 0.06680160324693242 0.3752284531334632 4.997244208247583 0.023331049669129897 0.02456321693777859 671.7897679682519 -2.827233384815607 0.09658154346334624 FKEANNFLWPFK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKEANNFLWPFK 12 1 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ; 122.34 0.00032848 835420000.0 2229240.0 3054500.0 2882100.0 3104300.0 2578800.0 3068800.0 3589200.0 2929800.0 5107700.0 3420200.0 False True 2217238.01953185 3156167.1860157596 3287874.62833772 3497304.061708947 2907194.8942548838 2856661.079178165 3415576.683924504 3148436.553222954 3848975.7746734815 3201919.9078194583 0.6924714182004048 0.9857108475162151 1.0268447440888044 1.092252199428264 0.9079536584144963 0.8921713101573431 1.066727707830315 0.9832964733234295 1.2020837139847995 1.0 21.610505790346107 4.739066648403422 3.939861279322451 1.01520725702169 0.6622121480090031 0.5726130015155582 0.08458742495798416 0.17543733187506141 5.587716242974369 0.020207031551972197 0.1781264041222909 54836.11119453462 -4.739066648403422 -0.3529951090126868 FKECLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKECLDK 7 1 A0A0B4J1W3;Q9BXJ9;Q9BXJ9-4 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 67.563 0.05911900000000001 564060000.0 1012300.0 1116600.0 927370.0 999730.0 1082300.0 1468900.0 1423500.0 1353500.0 2188900.0 1634700.0 False True 1006849.8892771039 1153765.3560010463 1057935.6351554585 1126295.7154953745 1220124.4897053107 1367358.40041867 1354639.8667019205 1454505.0429337395 1649474.924757285 1530372.0464629177 0.6579118401987231 0.7539116770119357 0.6912930993483702 0.7359620283829235 0.7972731157272058 0.8934810352678526 0.885170289037127 0.9504257780292535 1.0778260937068502 1.0 20.54545099631893 2.467467612445917 0.6699679290839474 1.0324993538472818 0.6877582886172232 0.915632146329822 0.03835841259937068 0.1952638803246198 0.17779258284584643 0.03093065699604965 0.02480904717797213 293.40506886757316 -2.467467612445917 -0.34474106523005854 FKEEGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKEEGVR 7 1 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 85.161 0.036431 0.0 928220.0 1127200.0 978470.0 950730.0 937020.0 1048600.0 1088700.0 992180.0 1304200.0 1069900.0 False True 923222.5666549363 1164718.1705932121 1116230.0709862984 1071092.3205194569 1056343.9428473364 976112.750138891 1036035.4217621223 1066221.5097879542 982797.385384646 1001618.066012527 0.9217311448168206 1.1628366241735153 1.1144268547691492 1.0693620221762863 1.0546374698019125 0.9745358867425651 1.0343617561598224 1.06449908000623 0.9812097232802452 1.0 19.933901058583967 2.9758303934876498 7.190310075572404 1.0202292612404107 1.0755835128473044 0.14474550642178685 0.06246045918799132 0.36852105317243833 80.3880951257219 0.01849088593734311 0.020315462427226576 945.8676962733285 -2.9758303934876498 0.05535425160689367 FKEFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKEFLR 6 1 P33992;B1AHB1;B1AHA9;F8WFD7 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 124.37 0.016766 535830000.0 478520.0 565270.0 535710.0 491460.0 464370.0 597720.0 609200.0 515880.0 806900.0 586590.0 False True 475943.70148857054 584084.6702370695 611133.3115252068 553678.785609471 523504.76696337096 556401.0232815354 579730.6686300026 554377.5851855616 608050.3069060503 549153.3239950346 0.8666863709867556 1.0636094597186683 1.1128646314644408 1.0082407980006645 0.9532943607714637 1.013197952137983 1.0556808878302348 1.0095133015903848 1.1072505261054348 1.0 19.06684948138103 2.3437787572085282 7.097014324005378 1.0405202306621681 1.0083894792448989 0.07657729095373278 0.06661205622294712 0.8110757744257503 48.779386924388085 0.02356757827783885 0.019642422938967525 220.6880194848321 -2.3437787572085282 -0.03213075141726929 FKEIAEAYDVLSDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FKEIAEAYDVLSDPR 15 1 P25685 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ; 124.29 8.895299999999999e-05 1125330000.0 2047980.0 2281300.0 1945820.0 1926440.0 1893750.0 2342500.0 2138130.0 2136540.0 3015400.0 2411900.0 False True 2036953.903231969 2357231.6914250264 2219774.5426293663 2170327.1064776573 2134907.8373643477 2180568.488651868 2034700.4834502104 2295979.463930289 2272295.074289882 2257970.47706852 0.902117155170473 1.0439603685542316 0.9830839531220342 0.9611848908207832 0.9454985612283371 0.96572054896079 0.9011191705623287 1.0168332523599313 1.0063440144000284 1.0 21.106595192341516 1.6119245205391195 24.999999999999996 1.0086942304173174 0.9616212561997853 0.2580856416401396 0.03855675946646626 0.540600731488417 3309.141898950936 0.018361190500854694 0.009713045826810233 40.91895372750337 -1.6119245205391195 -0.04707297421753209 FKFPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FKFPGR 6 1 P27635;X1WI28;A0A087WV22;H7C123;H7C2C5;Q96L21;F8W7C6 P27635;F8W7C6 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 ; 124.12 0.016863999999999997 8239800000.0 5231200.0 5835300.0 5037600.0 5050000.0 5085500.0 5719500.0 5649800.0 5370900.0 7021200.0 5625000.0 False True 5203035.80044096 6029524.432986655 5746850.292395856 5689329.482211839 5733108.280879944 5324124.427254804 5376497.589668078 5771703.830877588 5290919.339259835 5266007.68419521 0.988041816964444 1.1449896761607425 1.0913106544914075 1.080387614945405 1.0887010852807213 1.0110362055175155 1.0209817212771033 1.0960302713192227 1.0047306530029174 1.0 22.32827819590037 2.755724761416016 24.481064196998982 1.0372158226140071 1.0831655865435081 0.23605446022437737 0.04452394071515891 1027.415425292162 1465392.7491105131 0.013353171738756064 0.014131513420799106 569.8030393026638 -2.755724761416016 0.04594976392950101 FKGDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKGDSR 6 1 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;K7ES59;K7EKJ7;K7ELW5;K7EKX4 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 66.994 0.09115 148840000.0 601330.0 634090.0 616060.0 606390.0 634240.0 545230.0 701510.0 688180.0 958670.0 764460.0 False True 598092.5060940438 655195.3023345002 702795.8931104866 683158.9118254324 715006.7045649972 507539.53343336517 667575.2812715585 739535.4861072334 722418.6240198581 715671.508312866 0.835708141440471 0.9154972563866163 0.9820090431813716 0.9545705032130185 0.9990710769673702 0.7091794594839271 0.9327956660525858 1.033344876129867 1.0094276712550676 1.0 19.4489380199236 1.8355604075852445 5.310690312433445 1.0152761345920682 0.9043917200712418 0.2974433801248475 0.07832738963043998 0.2959272816502662 12.056178217409244 0.037321642745117185 0.02168932398081527 68.47947270345334 -1.8355604075852445 -0.11088441452082642 FKGPEFVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKGPEFVR 8 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 89.24700000000001 0.012805 571130000.0 511700.0 563950.0 657750.0 525090.0 443070.0 534980.0 599150.0 478170.0 859650.0 559590.0 False True 508945.0640552151 582720.7348350266 750355.4827345104 591566.3401613089 499492.3382183613 497998.091807461 570166.8255247319 513853.4734980612 647800.7762198363 523876.4871108979 0.9714981996271155 1.1123246589069993 1.432313725077854 1.1292095650707872 0.9534543933685369 0.9506021057632259 1.088361168238564 0.9808676016972776 1.236552493112189 1.0 18.998867186129328 3.465741879292241 21.397779265564086 1.0311452049118006 1.1851880377346382 0.183859303876296 0.13173088435531985 57.89963471866792 108872.0352568283 0.036815316073459475 0.0499331894534662 2922.4149391786864 -3.465741879292241 0.1540428328228376 FKGPGDTSNFDDYEEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKGPGDTSNFDDYEEEEIR 19 1 P17612-2;P17612;K7ERP6 P17612-2 PRKACA cAMP-dependent protein kinase catalytic subunit alpha 0 144.27 1.2487e-07 389210000.0 137380.0 162330.0 136910.0 134190.0 145570.0 176790.0 176970.0 155310.0 170780.0 169640.0 False True 136640.3613443529 167733.05591944297 156185.73795694698 151178.4402411895 164107.47663901147 164568.92341889598 168409.28500894873 166900.02084820013 128693.55733475692 158813.429963889 0.8603829120460541 1.0561641792988294 0.9834542204173821 0.9519247854262983 1.033335006216579 1.0362405966316304 1.0604221887735918 1.0509188101166875 0.8103442974817636 1.0 17.27697339273032 4.752031183890056 23.816199364297198 1.005038150681622 0.860382724875916 0.24672882582707734 0.07125909155983234 1583.0369721444358 2798739.940309431 0.016549630446284967 0.30993435339611936 56497.75407548587 -4.752031183890056 -0.1446554258057059 FKGPGDTSNFDDYEEEEIRVS(ph)INEK ddPTM_BT-474_Trastuzumab_2h_R1 5 FKGPGDTSNFDDYEEEEIRVSINEK 25 2 P17612-2;P17612;K7ERP6 P17612-2 PRKACA cAMP-dependent protein kinase catalytic subunit alpha 1 FKGPGDTSNFDDYEEEEIRVS(1)INEK;FKGPGDTSNFDDYEEEEIRVS(1)INEK;FKGPGDTSNFDDYEEEEIRVS(1)INEK;FKGPGDTSNFDDYEEEEIRVS(1)INEK;FKGPGDTSNFDDYEEEEIRVS(1)INEK 302.67 1.2253999999999999e-63 3488430000.0 2797035.0 1701340.0 1594448.0 1458251.0 1466996.0 2419422.0 1975363.0 2214734.0 3364593.0 2484048.0 True False 2781976.0743398005 1757968.0734182517 1818932.41920954 1642865.427082157 1653809.24503348 2252173.051846779 1879807.1450705344 2380008.697271378 2535434.138386353 2325513.929939514 1.1962844163277744 0.7559482017224365 0.7821636309255949 0.706452627925083 0.7111586061651736 0.9684625075134928 0.808340522440744 1.0234334297594516 1.0902683083271398 1.0 21.149118151024783 1.6714795868878203 4.620775233436721 1.0487187373964406 0.8349275965824202 0.27954327296847936 0.13944271883747675 0.19657655207211971 9.668625348710927 0.07586614513277018 0.03620671331661672 46.93313738500635 -1.6714795868878203 -0.2137911408140204 FKGQILMPNIGYGSNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKGQILMPNIGYGSNKK 17 2 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 97.095 0.0012144 609780000.0 413550.0 421490.0 433570.0 354200.0 424610.0 499770.0 525340.0 483510.0 729540.0 597250.0 False True 411323.4927497247 435519.0398539142 494612.887342002 399041.68368305545 478681.5666393543 465222.07623203634 499927.2972063124 519591.9714140313 549754.6423351599 559132.9936685499 0.7356451817500048 0.7789185127431181 0.8846068698196069 0.7136793718161525 0.8561139694129968 0.8320418961142843 0.8941116029054543 0.9292815435642879 0.9832269756219226 1.0 19.092831953364943 1.948814956490661 0.7226116665815028 1.006498652091287 0.7818129830833599 0.756378206523434 0.045664318070962745 0.31579907990957484 0.31555753917243257 0.03893902535088416 0.020758582545861444 88.88223291476916 -1.948814956490661 -0.2246856690079272 FKIDSNIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 FKIDSNISPK 10 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 FKIDS(0.016)NIS(0.984)PK;FKIDSNIS(1)PK;FKIDSNIS(1)PK 141.34 9.9145e-05 2261160000.0 5356590.0 3546130.0 3161410.0 2833020.0 2906670.0 4983760.0 5288760.0 4394130.0 8741860.0 5070610.0 True False 5327750.714613097 3664160.79336915 3606509.0485316794 3191680.0415239152 3276817.1953171412 4639244.4017091375 5032922.473774816 4722042.293540024 6587545.737922571 4746999.328632372 1.1223407348043677 0.7718898907922971 0.7597450091847238 0.6723573821198432 0.690292323310946 0.9773004124366962 1.0602323963725562 0.9947425661213357 1.3877283904778783 1.0 22.178584415051322 2.4739530436909036 3.0533941288252695 1.0966639285564819 0.7925139453712734 0.46079989444022196 0.15590020334968485 0.23939818531736867 4.603008920562219 0.05742431502936868 0.04925191583917027 297.81944069690684 -2.4739530436909036 -0.3041499831852085 FKIPGSPPESMGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FKIPGSPPESMGR 13 1 P50395;P50395-2;Q5SX87;V9GYF8;Q5SX90;V9GYJ7;Q5SX86 P50395;Q5SX86 GDI2 Rab GDP dissociation inhibitor beta 0 ; 165.64 3.1901e-05 6744600000.0 2502400.0 2825400.0 2598300.0 2616700.0 2583200.0 2740700.0 2836000.0 2643800.0 3538600.0 3074700.0 False True 2488927.3564427793 2919441.731009634 2964118.055171537 2947973.951703701 2912155.208174038 2551241.859913841 2698811.8454279173 2841093.780944378 2666559.4448106964 2878470.013616894 0.8646702396303093 1.0142338524281718 1.029754710366784 1.0241461393580658 1.011702464989315 0.8863187206553943 0.9375855342112006 0.9870152433425731 0.9263808315515767 1.0 21.456870752420542 2.8337965429995586 20.328724541271793 0.9491414042666186 0.9945369768021809 0.12713836755041585 0.053183577763457716 21.3482485049148 4550.092318499809 0.01631533641929632 0.01730508898125059 682.019108983853 -2.8337965429995586 0.045395572535562256 FKLDLDFPNLPYLLDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKLDLDFPNLPYLLDGK 17 1 P21266;A0A0A0MTN3 P21266 GSTM3 Glutathione S-transferase Mu 3 0 ; 171.68 1.5467e-09 612300000.0 1689400.0 1521930.0 1484010.0 1415870.0 1389100.0 1942850.0 2124950.0 1826440.0 2597740.0 1818170.0 False True 1680304.4581099844 1572586.520023886 1692945.7087538452 1595118.99682758 1565993.651159242 1808545.3524769612 2022158.0504027 1962738.227274397 1957561.7849326113 1702132.8339863499 0.9871758681575726 0.9238917719135529 0.994602580333881 0.9371295617932789 0.9200184732302745 1.0625171645631182 1.188014243087515 1.1531052031219655 1.150064052491164 1.0 20.69891219827252 2.529805547119186 4.043048589543682 1.1388620292751506 0.953415313008868 0.7001961877487437 0.052385784536601365 0.10609100046991159 3.5664194605886617 0.016821065901828674 0.015238211157634452 338.6924745579427 -2.529805547119186 -0.18544671626628262 FKMPDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKMPDLHLK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 101.32 0.0024408 1005180000.0 4203600.0 4233100.0 4312400.0 3626800.0 3536600.0 5395300.0 5315800.0 4260600.0 7449200.0 5520300.0 False True 4180968.284663861 4373996.174537008 4919548.435947247 4085952.5081358203 3986965.04692951 5022335.610170088 5058654.445671982 4578547.60688843 5613444.474166008 5167989.72783339 0.8090124990276781 0.8463631711533502 0.9519268990516553 0.790627056808954 0.771473098225563 0.9718160976832347 0.9788437501002454 0.8859436353423102 1.0861949751822297 1.0 22.301171771782762 2.719050259577047 24.259582629961987 0.9695289130187222 0.838729185945911 0.5680649830681149 0.06496940385703384 486.26391194648613 604629.5007223391 0.021529067886736458 0.02032801953981249 523.661034775162 -2.719050259577047 -0.1307997270728113 FKMPDVHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKMPDVHFK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 102.53 0.0021447 498950000.0 1483630.0 1495860.0 1448220.0 1323590.0 1303610.0 2015520.0 1770610.0 1558430.0 2474400.0 1866070.0 False True 1475642.3009267882 1545648.795833535 1652116.7878461003 1491156.3582892595 1469617.0063981705 1876191.8464237412 1684958.8299129508 1674727.960147192 1864617.275261285 1746975.814977095 0.8446838750003736 0.8847568366902666 0.9457010072390507 0.8535643971172036 0.841234889343582 1.0739655525502168 0.964500375716445 0.9586440440614513 1.0673400623383744 1.0 20.73642820513802 2.7488119711377315 24.99312687579651 1.0020394887847333 0.8774358451447574 0.6999305735073805 0.04516726294189351 446.45340125697373 1088467.0647685982 0.014268188795322285 0.014984038308629412 560.8051215097238 -2.7488119711377315 -0.12460364363997589 FKMPEMHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKMPEMHFK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 93.111 0.0057805 542080000.0 1444500.0 1469000.0 1718200.0 1176500.0 949510.0 1505200.0 1810500.0 1204600.0 2891300.0 1581500.0 False True 1436722.9724990365 1517894.7769707483 1960107.6251378742 1325444.7793707363 1070424.4703133067 1401149.0668596767 1722919.1982183517 1294493.3688348571 2178777.856435079 1480567.3160097285 0.9703867949558304 1.0252115932571177 1.3238895685071268 0.8952276367567924 0.7229826423550965 0.94635958237678 1.1636885264101229 0.8743225349075254 1.4715831106599702 1.0 20.497718655426002 -0.1749148441322625 7.691823574043986 0.9999890053739676 1.0284990577301325 0.0 0.21139108595779083 0.0 0.0 0.19828710142482373 0.046736718013105874 0.6684749783781241 0.1749148441322625 0.028510052356164883 FKMPEMNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKMPEMNIK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 120.45 0.00060434 2434500000.0 2362610.0 2459560.0 2842900.0 1961550.0 1532760.0 2603170.0 2728710.0 2190010.0 4516700.0 2704900.0 False True 2349889.9702706486 2541424.967764585 3243155.6090702256 2209882.028877748 1727947.9006197117 2423218.9851030484 2596711.872615521 2353439.666845448 3403619.805679215 2532270.9662186 0.9279772984878083 1.0036149376066394 1.28073008470858 0.8726878198890895 0.6823708535425925 0.956935105851489 1.0254478715969126 0.9293790823498648 1.3440977885402945 1.0 21.272000358254626 1.2663975845499997 24.997769611171506 1.1720492177848496 0.9614377147286732 0.22021154511170282 0.15967092859207196 283.5763701401187 254653.86382687732 0.10899096541514043 0.039780261627861746 18.46705252991346 -1.2663975845499997 -0.21061150305617637 FKMPFLSIS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 FKMPFLS(0.001)IS(0.499)S(0.499)PK 71.692 0.026588 209770000.0 149850.0 129350.0 113020.0 117780.0 113360.0 174130.0 163390.0 147280.0 278910.0 176020.0 True False 149043.2242499003 133655.33655627366 128932.23361254949 132690.93592374463 127795.724062639 162092.80295792955 155486.20148958676 158270.78147268636 210176.36770252383 164786.25290169622 0.9044639442029944 0.8110830497250653 0.7824210535903406 0.8052306159476897 0.775524182462453 0.9836548868832313 0.9435629413962253 0.9604610741837992 1.2754484309313425 1.0 17.330236366849974 1.9985384746630221 1.0495300816315363 1.104359072128758 0.8169495552527846 0.6137682116914538 0.08874056581618751 0.3437882242391497 0.6974936652804359 0.06875884051305176 0.03218162335986406 99.6640369775777 -1.9985384746630221 -0.2874095168759734 FKMPFLSISS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 FKMPFLS(0.003)IS(0.286)S(0.711)PK 79.346 0.014099 199480000.0 460140.0 394660.0 415350.0 357560.0 298560.0 587050.0 500980.0 472230.0 987410.0 495450.0 True False 457662.6573663601 407796.01952299156 473827.6697130812 402827.05933854735 336579.84629623755 546468.6152670569 476745.68347055005 507470.2005353519 744076.0361161268 463829.95682391466 0.9867035335540091 0.8791929316411198 1.0215546942194638 0.8684800397475706 0.7256535317403281 1.1781658498493977 1.0278458224972706 1.0940867295641374 1.604200041780835 1.0 18.82323647502793 1.9426588675483931 1.3049513866752007 1.2658486489357343 0.9172959654710496 0.3699122885232403 0.17737705016993605 0.45651221083585625 1.440457620488015 0.12708395742046144 0.05688829158356636 87.63122193191839 -1.9426588675483931 -0.3485526834646847 FKNEEEVFAWNNEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FKNEEEVFAWNNEVK 15 1 P49419;P49419-2;A0A1B0GW77;A0A1B0GW82;A0A1B0GTG2;A0A1B0GUA1;A0A1B0GV49;A0A1B0GTJ4;A0A1B0GTY9;P49419-4 P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase 0 ; 202.03 5.5767e-09 795350000.0 1358990.0 1105720.0 1075650.0 1008520.0 971510.0 1486770.0 1412280.0 1330560.0 2106460.0 1477080.0 False True 1351673.348837983 1142523.221778145 1227092.1702825953 1136198.5285941137 1095226.0399090894 1383993.0893801237 1343962.6209664836 1429853.1436467795 1587351.158117881 1382811.4898081906 0.9774820058990639 0.8262320860066212 0.8873893363822172 0.8216582932440888 0.7920284492725815 1.0008544907101524 0.971905882234826 1.0340188479668433 1.1479158003945007 1.0 20.399173065468734 2.331416739628748 1.6260135925601322 1.055720505727377 0.8604741379993096 0.6232821478343159 0.0652600781699253 0.24104383496243104 1.285821413513473 0.032688279869499126 0.021959053010690233 214.49478596688377 -2.331416739628748 -0.19524636772806747 FKNELER ddPTM_BT-474_Trastuzumab_2h_R1 4 FKNELER 7 1 P41091;Q2VIR3;Q2VIR3-2;H7BZU1 P41091 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein 0 ;;; 127.56 0.0035044000000000004 2937930000.0 2933980.0 2963430.0 2811870.0 2683490.0 2828070.0 3369560.0 3059740.0 3007520.0 4402130.0 3288960.0 False True 2918183.7776758233 3062065.9761187346 3207756.8547878233 3023219.558855573 3188207.9512158376 3136630.2482910505 2911728.686858118 3231956.4142771116 3317284.047019866 3079055.7569796746 0.9477528203446193 0.9944821457609441 1.0417988851018387 0.9818658048015108 1.0354498920614654 1.0186987491801227 0.9456563689234092 1.049658294414071 1.0773705670968023 1.0 21.55405656193904 4.6351006994313275 3.1929485622633336 1.0177440308095747 0.9444599133998011 0.2739990305427036 0.0351187827714852 0.3770033278054486 6.166096394690273 0.008561880140239772 0.05846527246456714 43161.9144329495 -4.6351006994313275 -0.07328411740977359 FKPNQTR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKPNQTR 7 1 Q9NZJ9;A0A024RBG1;Q9NZJ9-2 Q9NZJ9 NUDT4 Diphosphoinositol polyphosphate phosphohydrolase 2 0 74.127 0.042886 775590000.0 260130.0 288590.0 262720.0 243650.0 228990.0 291780.0 285370.0 265040.0 333850.0 308570.0 False True 258729.4889831599 298195.5436936611 299708.69239682355 274496.0650180029 258150.5191699335 271609.9353762398 271565.5628807353 284818.6306458498 251577.1408608066 288876.7984199318 0.8956395612189401 1.0322585452507782 1.0374965869053483 0.950218454785614 0.8936353510629387 0.9402275878916672 0.9400739843632868 0.9859519082311943 0.8708803968918827 1.0 18.140094810742667 3.5028771301779265 23.56538763738304 0.9396408285789164 0.9930131629881022 0.1619056496981831 0.0506296078059909 595.5898781478897 544933.7084811843 0.013136085257389836 0.02024554126315394 3183.296781652865 -3.5028771301779265 0.05337233440918576 FKQESTVATER ddPTM_BT-474_Trastuzumab_2h_R1 2 FKQESTVATER 11 1 Q9H307 Q9H307 PNN Pinin 0 ; 195.77 5.7239000000000014e-08 1546070000.0 1112350.0 1221930.0 1132620.0 1112800.0 1246310.0 1463060.0 1466690.0 1367290.0 1900300.0 1595150.0 False True 1106361.2311937036 1262601.2013777157 1292083.0510904773 1253680.365902046 1405020.1910418821 1361922.1058727875 1395740.6014000962 1469324.1227579396 1431996.527715413 1493346.1613233767 0.740860531769316 0.845484613064409 0.8652267535515384 0.8395108906236829 0.9408536529780733 0.911993576001077 0.934639695436198 0.9839139516425655 0.9589180089674608 1.0 20.510117193831075 7.196074684507605 0.22892098652309753 1.008352043374714 5.847080701279615e-19 0.892774513669861 0.024645112886838256 9.93424996586624 0.17893710948769354 0.035673211477138186 3.478046185679456 15706328.788166294 -7.196074684507605 -1.008352043374714 FKRPQFS(ph)PTGDCQAEAAAAANGTGGEEDDGPAAELLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEK 38 2 Q7Z4Q2 Q7Z4Q2 HEATR3 HEAT repeat-containing protein 3 1 FKRPQFS(0.995)PT(0.005)GDCQAEAAAAANGTGGEEDDGPAAELLEK 226.1 7.3419e-40 608740000.0 44890.0 35045.0 33761.0 36794.0 41639.0 44028.0 48588.0 44500.0 66936.0 54178.0 True False 44648.31722774787 36211.45163985016 38514.25534412743 41452.116627426185 46941.47983631109 40984.44799076394 46237.61281581514 47820.8159664214 50440.519696447445 50720.31365588058 0.8802847224224783 0.7139437639430244 0.7593457644097601 0.8172685387685921 0.9254966393700256 0.8080479996403206 0.9116192208415945 0.9428336009684158 0.9944835916959931 1.0 15.630276046722043 2.1925315161325316 0.5821100827592414 1.0102704183899454 0.7782616740996225 0.660928015583369 0.053859005294566116 0.47945236719894446 0.3280098877756268 0.04866427882917022 0.035979703490646234 155.78710832172627 -2.1925315161325316 -0.2320087442903228 FKVETR ddPTM_BT-474_Trastuzumab_2h_R1 1 FKVETR 6 1 Q53GQ0;E9PI21;A0A1B0GVY6 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase 0 86.47200000000002 0.048827 332990000.0 939390.0 1315200.0 1138300.0 940460.0 1612200.0 2421200.0 1501200.0 1646700.0 2704500.0 2340700.0 False True 934332.428616041 1358975.6369448102 1298562.7457190338 1059522.139572463 1817504.1137419443 2253828.142891741 1428581.2208590964 1769585.1157731696 2038012.213443319 2191314.52202591 0.4263798825885723 0.6201645739509873 0.5925953269905266 0.4835098425729025 0.8294127088892874 1.0285279088133983 0.6519288794464553 0.8075450137286344 0.9300409379659199 1.0 21.06336514027995 3.2110124382423577 8.962697887952313 0.8535078343700975 0.5414906675091067 0.689105324266964 0.11254562012294457 0.16169620931843326 48.09764174912324 0.03254798022780939 0.039436050989049724 1625.5953123146826 -3.2110124382423577 -0.3120171668609908 FKYDDAER ddPTM_BT-474_Trastuzumab_2h_R1 3 FKYDDAER 8 1 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PK06;H0YCK7;E9PIZ1;E9PK72;E9PKK3;E9PJD0;E9PNW6;P29692-3;E9PL71;E9PN91 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 ;; 97.915 0.0071988999999999985 1636040000.0 2771840.0 2846220.0 2477040.0 2214690.0 2209850.0 2898800.0 2647880.0 2459590.0 3831730.0 2866730.0 False True 2756916.7214203766 2940954.712123678 2825785.701182357 2495069.5269227177 2491261.29869286 2698412.7790412093 2519791.9285161057 2643137.0953449537 2887451.4840514576 2683772.8370689712 1.027254126482362 1.0958284812717543 1.0529153817163164 0.9296873015704481 0.9282683184965987 1.0054549855226296 0.9388991101303663 0.9848587253128335 1.0758926553578692 1.0 21.35583113180728 3.860242745721807 6.637604137819314 0.9768234697346259 1.0643716102975513 0.39379144020243084 0.04432839804274289 0.22510720836929454 11.282116406568319 0.011426046536199316 0.02083118513764562 7248.409914364201 -3.860242745721807 0.08754814056292548 FKYDDAERR ddPTM_BT-474_Trastuzumab_2h_R1 2 FKYDDAERR 9 2 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PK06;H0YCK7;E9PIZ1;E9PK72;E9PKK3;E9PJD0;E9PNW6;P29692-3;E9PL71;E9PN91 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 ; 112.13 0.001132 628870000.0 607050.0 695840.0 649860.0 688540.0 614990.0 671180.0 754430.0 657230.0 1068450.0 811190.0 False True 603781.7102495959 719000.6137558374 741354.6393156209 775709.0934024039 693305.3311686862 624782.906387774 717935.3386975268 706275.8399463176 805144.8139964916 759419.1597053003 0.7950572520239008 0.9467770263194997 0.9762127144689244 1.0214505171339434 0.9129415847734599 0.8227115400014754 0.9453742765406765 0.9300210969399225 1.0602113519349914 1.0 19.534536872212787 1.2538786427331925 20.393390800449026 1.030105299105566 0.9232755379906646 0.31881400403273197 0.06480693707086588 29.112719594720264 38763.19348707539 0.0449033774977764 0.016150775068280034 17.94232184727145 -1.2538786427331925 -0.10682976111490128 FLAADGDPARPDGSWTFAQRPTEQELR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLAADGDPARPDGSWTFAQRPTEQELR 27 2 Q9ULW3 Q9ULW3 ABT1 Activator of basal transcription 1 0 84.404 0.005005699999999999 67115000.0 40120.0 51900.0 48580.0 46684.0 43932.0 49153.0 56962.0 49032.0 49520.0 55610.0 False True 39903.99837775105 53627.46012578746 55419.6417350704 52594.18961338164 49526.479794635285 45755.16880371624 54206.53044402862 52691.0168194511 37316.459534003756 52060.92218988369 0.7664865833956561 1.0300904761193066 1.0645151757576696 1.0102431420932758 0.9513177583369645 0.878877416670257 1.0412134123617551 1.0121030247460705 0.7167844510686553 1.0 15.667913246938582 1.2893540693866818 24.999995352165815 0.8583857834676513 0.9774862979348913 0.14648244617466544 0.10569237186580097 150.3804711557909 74015.25616424253 0.06703827774124839 0.024480118602453856 19.46946731542483 -1.2893540693866818 0.11910051446724002 FLAAGTHLGGTNLDFQMEQYIYK ddPTM_BT-474_Trastuzumab_2h_R1 3 FLAAGTHLGGTNLDFQMEQYIYK 23 0 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 0 ;; 327.3 1.9374999999999994e-86 3255159000.0 1221864.0 1266200.0 1180720.0 1228091.0 1182815.0 1461522.0 1403169.0 1319961.0 1657338.0 1460758.0 False True 1215285.6199858533 1308344.701565937 1346955.1129977824 1383567.1946809927 1333439.4791562303 1360490.4241927252 1335292.3548438812 1418463.1924461469 1248909.2570914102 1367531.1738221573 0.8886712370798919 0.9567202025158972 0.9849538634158765 1.011726256165712 0.9750706270405207 0.994851488752718 0.9764255326712803 1.0372437715490155 0.9132583454026815 1.0 20.383142289951525 4.701954393103045 1.922363179386456 0.9909383327401765 0.8620976593647287 0.48728101414183655 0.0303199332139552 0.553278099829913 2.2894648167122567 0.00738331883297969 0.12368798105523224 50344.773707145425 -4.701954393103045 -0.1288406733754478 FLATEGAPDFLCPEELEHVSR ddPTM_BT-474_Trastuzumab_2h_R1 6 FLATEGAPDFLCPEELEHVSR 21 0 A0A494C1T9;Q6ZRV2 A0A494C1T9 FAM83H Protein FAM83H 0 ;;;;; 284.65 2.8965e-45 1147046000.0 436025.4 692370.0 703160.0 790411.0 746807.0 723721.0 707209.0 683638.0 719602.0 724296.0 False True 433677.8876933757 715415.1169034963 802158.8160237151 890476.951557334 841908.4447781164 673691.8707259854 672998.5988692648 734654.539003425 542265.729272782 678070.809178997 0.6395761059504532 1.0550743480164197 1.1830015466894424 1.3132506804643558 1.2416231953672991 0.993542063168427 0.9925196450856312 1.0834481134690628 0.7997184393313631 1.0 19.371076412573146 2.531385915066367 24.91498839174751 0.9886247434557426 1.1042035320931622 0.08059830478536278 0.1821834111602742 836.75083290699 384182.8989920238 0.06183892936358112 0.05830192779554097 339.9271985077929 -2.531385915066367 0.11557878863741966 FLCADYAEQDELDYHR ddPTM_BT-474_Trastuzumab_2h_R1 4 FLCADYAEQDELDYHR 16 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ;;; 250.52 7.0761e-21 2016540000.0 1476450.0 1813040.0 1641570.0 1748240.0 1635760.0 1751810.0 1734270.0 1490720.0 1887690.0 1715790.0 False True 1468500.9572490172 1873385.9403941762 1872688.7872177768 1969567.004748912 1844064.3400908832 1630711.4980171763 1650376.7345452337 1601965.0961227773 1422494.09325007 1606286.813238278 0.9142208882911239 1.1662835833268317 1.1658495679500922 1.2261614728556853 1.1480293088961149 1.0152056809391705 1.0274483491637898 0.9973094984781777 0.8855791391216856 1.0 20.61529808801525 2.6058254234933065 3.0821475904604467 0.9832404150019365 1.1344886335190552 0.40427096126633144 0.08449349681939697 0.26890898391253143 4.868780187059091 0.02993887799583808 0.027713344240435506 403.4831693050578 -2.6058254234933065 0.15124821851711867 FLCDDVDFNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLCDDVDFNLR 11 0 Q4ZG55;Q4ZG55-4 Q4ZG55 GREB1 Protein GREB1 0 75.378 0.088988 17447000.0 26517.0 23692.0 23187.0 22761.0 21785.0 24667.0 25376.0 26227.0 30723.0 28092.0 False True 26374.235418315668 24480.573897883554 26451.528054983046 25642.540266262095 24559.190620188678 22961.82834987221 24148.4659342662 28184.191918007484 23151.728317108176 26299.14450922878 1.002855260522278 0.9308505791621069 1.0057942396453539 0.9750332470800991 0.9338399053843929 0.8731017216858346 0.9182224891685024 1.0716771379432974 0.8803224876377205 1.0 14.682728250079691 -2.8983256073577754 2.061559506213915 3.8649657541440137 0.9597288244256944 0.04571933001513595 0.05812499669954901 1612608.7018467505 346873.44482204533 20894962.328225337 0.015726394009625125 0.0012637884811221084 2.8983256073577754 -2.905236929718319 FLDAGHK ddPTM_BT-474_Trastuzumab_2h_R1 8 FLDAGHK 7 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;;;; 135.35 0.0030858 12140190000.0 20329000.0 23574150.0 21887380.0 19936640.0 20047810.0 24198290.0 25915910.0 23405290.0 31161450.0 22592180.0 False True 20219550.92276424 24358801.331875365 24968932.85548258 22460616.579850227 22600779.770820495 22525519.168947577 24662258.424909666 25151911.58945445 23482128.189537164 21150327.730261564 0.9559923222293345 1.1516985288612416 1.180545908031364 1.0619512315033266 1.0685782300424427 1.065019864288836 1.1660461596357812 1.1891972507578443 1.1102489043675334 1.0 24.334176682694345 2.2416130022168184 24.996265764640885 1.1394637968223613 1.0870060065228186 0.012372117461135201 0.07418479682464506 189.75437788541257 1553925.1284216668 0.026107774024864923 0.020969585373494026 174.4267151888976 -2.2416130022168184 -0.05245779029954267 FLDEDFVFDIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLDEDFVFDIYR 12 0 O75794;H7BZW7 O75794 CDC123 Cell division cycle protein 123 homolog 0 114.5 0.0024460000000000003 10499000.0 18843.0 23733.0 23876.0 26809.0 22496.0 19649.0 23601.0 15995.0 24872.0 21433.0 False True 18741.55138165411 24522.938558098544 27237.5332660877 30203.016651211303 25360.732255761508 18290.7108787708 22459.32946542466 17188.628120964262 18742.628867724972 20065.12759028551 0.9340359934081752 1.2221670880364237 1.3574562705135598 1.5052491699994988 1.2639208069646093 0.9115671353929595 1.1193215375464793 0.8566418550603238 0.9340896928459692 1.0 14.292402709516693 2.7455988089955796 23.4290418572297 0.9603026435027883 1.2740756273222404 0.4912034532977233 0.14815155517899675 198.3697003571212 660341.1571028449 0.04803012520750639 0.04987052983321107 556.6712715396695 -2.7455988089955796 0.3137729838194522 FLDGIYVSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLDGIYVSEK 10 0 A0A2R8Y5Y7;P32969;D6RAN4;H0Y9R4;H0Y9V9 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 ; 121.73 0.00118 75328000.0 233820.0 227557.0 207194.0 213167.0 191844.0 244130.0 238060.0 225660.0 326870.0 249080.0 False True 232561.13909984397 235131.09718388855 236365.1142374674 240153.92034349515 216274.1962515254 227253.86772020525 226544.12832248618 242499.8950782615 246317.26833359874 233183.50115188354 0.9973310202095551 1.0083522034036896 1.0136442461403457 1.0298924201634294 0.9274849857866045 0.974570956339591 0.9715272615918361 1.039953057915147 1.0563237412460007 1.0 17.83110618901116 1.6878898505481135 7.201405094121908 1.035906483726147 0.9893930969357463 0.30444385213222447 0.029609436637152816 0.1537053510444914 15.998151957821271 0.0155166214304005 0.00803245776195453 48.74048546699974 -1.6878898505481135 -0.046513386790400624 FLEDTFGNDGRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 FLEDTFGNDGRPR 13 1 O00754;O00754-2;M0R2P5 O00754;M0R2P5 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide 0 ;;; 225.13 1.1823e-11 1480340000.0 1159620.0 1604070.0 1452360.0 1456500.0 1452950.0 1403710.0 1425490.0 1367390.0 1481600.0 1337990.0 False True 1153376.7347658938 1657460.5002692086 1656839.6638605753 1640892.7506616914 1637974.5701906434 1306674.8316779148 1356533.6027993802 1469431.5852657282 1116479.5324228597 1252598.3326891281 0.9207873782569856 1.3232178720140129 1.322722233154826 1.3099911662335981 1.307661464528836 1.0431714601381379 1.0829757372318385 1.1731067708760987 0.891330846677687 1.0 20.25649243303563 2.731309590273876 24.3178265341979 1.0627213768373718 1.2505039798033368 0.35493104254942365 0.1312659882117896 464.1333042302611 1556562.5033159188 0.04190474107838808 0.04029791909346296 538.6536292075923 -2.731309590273876 0.18778260296596505 FLEEHPGGEEVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEEHPGGEEVLR 13 0 P00167-2;P00167;P00167-3 P00167-2 CYB5A Cytochrome b5 0 ; 157.52 4.7359e-05 960170000.0 801760.0 1166950.0 1212120.0 977820.0 1393700.0 1590570.0 1184470.0 928500.0 1246300.0 1180340.0 False True 797443.4132439094 1205791.225313828 1382775.9600640892 1101611.9117418565 1571179.4338929085 1480617.6396990425 1127172.6609851944 997789.3848274655 939166.0645643949 1105009.6906600862 0.7216619184285618 1.091204208891181 1.2513699850343187 0.9969251139180507 1.4218693710770556 1.3399137149779963 1.0200568108247712 0.9029688999663236 0.8499165867073769 1.0 20.07562759107296 2.0046195589568283 24.75101011531566 0.9205136301608738 1.1495905209759658 0.22117425195260276 0.18497734175591565 165.89429635862382 888834.958993204 0.07201420749685132 0.05297795019980004 101.06937008235114 -2.0046195589568283 0.22907689081509197 FLEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 FLEELR 6 0 Q5T508;D6R9F0;Q92535;Q9HBX8-1;O75473-3;O75473-2;O75473;Q9HBX8-2;Q9HBX8 REV__Q8IYE1 LGR6;PIGC;LGR5 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C;Leucine-rich repeat-containing G-protein coupled receptor 6;Leucine-rich repeat-containing G-protein coupled receptor 5 0 ;;; 132.94 0.034151 440424000.0 973190.0 1252240.0 1089800.0 1196210.0 1083440.0 1158020.0 1174720.0 974350.0 1221880.0 1152940.0 False True 967950.453171573 1293920.051404935 1243234.367288591 1347650.0633498244 1221409.661948002 1077968.8030858657 1117894.305733811 1047060.9446490481 920764.0463531596 1079358.382118404 0.8967831900946782 1.1987863093863425 1.1518272224361252 1.2485658940312832 1.1316071493796165 0.9987125879081876 1.0357026213478555 0.9700771884441504 0.8530661007570266 1.0 20.041742535409654 2.3661897685028896 1.4380866684992308 0.9464326563592054 1.1363439768649206 0.3881623529543744 0.09661142016419559 0.4118106489533535 1.7097278591537544 0.051652276476607896 0.03464951690013002 232.37519568497015 -2.3661897685028896 0.18991132050571524 FLEETNR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEETNR 7 0 A0A669KAX4;Q13620-1;K4DI93;Q13620;Q13620-3 A0A669KAX4 CUL4B Cullin-4B 0 ; 122.5 0.010084 224290000.0 239750.0 337750.0 269280.0 350580.0 314120.0 290810.0 313120.0 269010.0 285640.0 307330.0 False True 238459.21263872884 348991.80457581324 307192.2833762818 394963.3920542225 354121.32006489235 270706.9891931059 297973.1893654411 289084.89220510155 215247.84937990393 287715.9362815491 0.8288008503129306 1.212973494225574 1.0676929729595297 1.3727546591917823 1.2308018966261263 0.9408828467819077 1.0356506254622426 1.0047580121603443 0.7481262670458046 1.0 18.134285607080297 2.7277906802105982 24.525291209604937 0.9585346664610899 1.1551384858262652 0.29727267163736804 0.14998524731271817 727.892814910905 1657553.2617591575 0.048365837161534406 0.04604012009656091 534.3067739503201 -2.7277906802105982 0.19660381936517535 FLEFQYLTGGLVDPEVHGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEFQYLTGGLVDPEVHGR 19 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 237.31 3.2446000000000005e-24 2227900000.0 1203430.0 1310670.0 1209580.0 1274960.0 1229690.0 1606130.0 1526350.0 1133190.0 1426960.0 1470410.0 False True 1196950.8665936424 1354294.8586332542 1379878.350142166 1436369.8052754044 1386283.7325563368 1495102.0135233423 1452514.6192767636 1217754.392022227 1075304.8282843705 1376567.1749186644 0.8695186754430384 0.9838203927195008 1.002405385864077 1.0434433069786613 1.007058542303427 1.0861090114339547 1.055171622382022 0.8846312873138058 0.7811495493112465 1.0 20.39264358285908 1.6492597596226868 5.991768729554442 0.8720975923135599 1.0098823286455958 0.34482128218883057 0.0735981534599542 0.13370496271127003 10.044324216648809 0.03836698315727852 0.01885508331633243 44.592288343620005 -1.6492597596226868 0.13778473633203592 FLEGVR ddPTM_BT-474_Trastuzumab_2h_R1 6 FLEGVR 6 0 F8VWS0;P05388;F8VU65;F8VW21;Q8NHW5;F8VZS0 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 ;;;;; 162.47 0.019043 4512580000.0 3241760.0 4119390.0 3671990.0 3679510.0 3347750.0 3332620.0 3516600.0 3135740.0 4146200.0 3424010.0 False True 3224306.724353399 4256501.405926155 4188974.274490763 4145335.5887313406 3774066.118831156 3102243.8235436464 3346488.623283434 3369744.8417650852 3124424.5662335656 3205486.7503575524 1.0058711751011753 1.3278798938886172 1.30681378546441 1.293200038424415 1.1773769204973883 0.9677918098390549 1.043987663623989 1.051242792187243 0.9747114274875899 1.0 21.61211201478211 2.8961256813923484 4.227520192244249 1.0178397774399885 1.2448048399122391 0.6008453654463792 0.08785003730981762 0.15691819010376395 4.797414872646784 0.02698260365443 0.029073808906074413 787.2735874892101 -2.8961256813923484 0.22696506247225057 FLEIGKFDLSQNHPLGMAIFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEIGKFDLSQNHPLGMAIFLK 22 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 177.73 3.7725e-17 365240000.0 247760.0 359980.0 335450.0 369420.0 337540.0 454590.0 474540.0 387640.0 619700.0 508690.0 False True 246426.08768872387 371961.71668749506 382678.44421633135 416188.5341225139 380523.7182436763 423165.2632897556 451584.68728115887 416567.66519603535 466983.23855456675 476224.9686885801 0.5174573025167657 0.7810630293321172 0.8035665271187785 0.8739326190069507 0.7990419303119611 0.8885826890913776 0.9482591568533771 0.8747287365951685 0.9805937723940367 1.0 18.86128373817577 5.354765204796766 0.6031239436614056 0.9217301845093828 1.064495366015731e-40 0.8300888787141169 0.054038639565751515 2.7977449569262625 0.4489162335771174 0.023627050774829884 2.1089636345170475 226342.029040432 -5.354765204796766 -0.9217301845093828 FLELGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLELGK 6 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 0 ; 116.35 0.055015 1118760000.0 2649900.0 2322400.0 2185300.0 1997570.0 2115200.0 2788900.0 2725800.0 2499100.0 3210100.0 2626200.0 False True 2635633.232831569 2399699.6800795533 2492971.245031894 2250462.1571845347 2384558.182227363 2596109.9073644425 2593942.6404327992 2685595.532172666 2419013.8681362164 2458593.667597059 1.072008468730639 0.9760456604547156 1.0139826185546286 0.9153452995687796 0.9698870592788699 1.0559328861778883 1.0550513794205063 1.0923299639006514 0.9839014474077261 1.0 21.22940188938145 2.733573803270837 24.474898157202688 1.0486138365764424 0.9859544937416058 0.18674015601914606 0.046999976452004766 407.561000527221 2000274.7713250828 0.015044063995456696 0.014601300547446606 541.4692564356055 -2.733573803270837 -0.06265934283483654 FLELGKEEDFHPELESLDGDLDPGLPSTEDVILK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLELGKEEDFHPELESLDGDLDPGLPSTEDVILK 34 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 0 71.906 0.0022876 31332000.0 102340.0 92060.0 86389.0 82258.0 91342.0 112960.0 113810.0 103390.0 183180.0 122530.0 False True 101789.01281104282 95124.16144855476 98551.82029335113 92671.85436589725 102973.86227354953 105151.34107923806 108304.57550357949 111105.4868037821 138037.7434862439 114710.03049678916 0.8873593038918423 0.8292575726515684 0.859138646084744 0.8078792583748047 0.8976883872106709 0.9166708493045109 0.9441595912278223 0.9685769092955829 1.2033624512906718 1.0 16.807632023726654 1.8038313590920685 1.2334231960057493 1.088011923390313 0.8565882294608712 0.6881505655718725 0.05973415576223501 0.2432749332782664 0.6900068479579152 0.04652563313822771 0.018878661205125498 63.65482948165855 -1.8038313590920685 -0.23142369392944173 FLEMCNDLLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 FLEMCNDLLAR 11 0 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;; 94.616 0.016247 215811000.0 232398.0 268272.0 255120.0 283389.0 270088.0 262312.0 301408.0 251582.0 322027.0 287218.0 False True 231146.79498984513 277201.27134615113 291038.67845720786 319266.0183434713 304482.10586300294 244178.9888560294 286827.74354962556 270356.3263475105 242667.76079072343 268887.50134029886 0.8596412768822237 1.0309191389127847 1.0823808358755764 1.1873590879161555 1.132377311497481 0.908108363679579 1.0667202533397857 1.0054626005295528 0.9024880650127645 1.0 18.03664317061656 2.7438029446976233 24.98556909299877 0.9867819300468359 1.0654828861529915 0.16130068871892522 0.0913172749725602 935.8679527913073 4460469.081437612 0.02978599543893538 0.03071604479715591 554.3741160553494 -2.7438029446976233 0.07870095610615557 FLENGS(ph)QEDLLHGNPGSTYLASNSTSAPNWK ddPTM_BT-474_Trastuzumab_2h_R1 3 FLENGSQEDLLHGNPGSTYLASNSTSAPNWK 31 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK;FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK;FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK 422.98 4.112199999999996e-197 4515150000.0 2670252.0 2506499.0 2421076.0 2489689.0 2351559.0 3052200.0 2732390.0 2667569.0 3376400.0 3294730.0 True False 2655875.6599248843 2589926.3040043567 2761942.456430162 2804883.372126439 2651016.099867813 2841208.5981059717 2600213.8569565546 2866636.5444209184 2544331.461442046 3084457.5106397346 0.8610511413315076 0.8396699565711284 0.8954386458244059 0.9093603534660751 0.8594756422233797 0.9211372140174784 0.8430052441919536 0.9293811098167344 0.8248878295990326 1.0 21.55658534215719 -1.7795415934924474 2.5933539617919954 1.032280006150859 0.8795351069329433 0.5334886511032533 0.034658120880399934 8407695.976255987 5796976.9348972 1715903.880868406 0.00832718399357219 0.01661339559411743 1.7795415934924474 -0.15274489921791568 FLENHEK ddPTM_BT-474_Trastuzumab_2h_R1 6 FLENHEK 7 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;;;;; 114.93 0.005793899999999999 3068430000.0 3881340.0 3813990.0 3421620.0 3571450.0 3432240.0 4176720.0 4078680.0 3690810.0 5226360.0 4072640.0 False True 3860443.296697409 3940936.3515443616 3903354.3547458095 4023595.203810986 3869315.419519693 3887993.177341316 3881378.6663293224 3966236.983753435 3938393.607636026 3812720.628437474 1.0125166968447654 1.0336284075341322 1.0237714050256757 1.0553081633625836 1.014843676365927 1.0197424768923313 1.0180076235798021 1.040264254918377 1.0329614969062277 1.0 21.862389392878672 -1.9660656272892514 2.4405189997771766 0.9764023793299077 1.028558300342113 0.30927570303575724 0.012470174608550122 2171723.272425945 1028807.0166665993 289522.2793123326 0.002964752091519668 0.010812705455453625 1.9660656272892514 0.05215592101220534 FLEPTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 FLEPTLR 7 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ;;; 170.17 0.0022912 370284000.0 583700.0 662230.0 581750.0 636960.0 604310.0 653150.0 646900.0 577510.0 722360.0 664090.0 False True 580557.424055166 684271.9252235118 663655.3433383525 717599.0706910201 681265.2964740058 607999.2778497192 615606.9756020168 620606.7287363597 544344.057128088 621707.2076439467 0.9338116349901683 1.1006337337098977 1.0674724937698157 1.1542395871691276 1.0957976489540204 0.9779511486666274 0.9901879341803874 0.9982299080756077 0.8755633687937476 1.0 19.245875779018945 2.7290046359997797 21.909962501360422 0.9725918332848422 1.0765672839655414 0.39996566007563583 0.06213313594446311 129.21555723802584 296263.4274254212 0.019887295892291393 0.019032086485831757 535.8023770574473 -2.7290046359997797 0.10397545068069913 FLEQVHQLYDDSFPMEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEQVHQLYDDSFPMEIR 18 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224;J3KPM9;A0A669KBI6;P42224-2;A0A669KB52;E7EPD2;A0A669KB75;D2KFR9;A0A669KB17;E7ENM1;E9PH66;Q67C41 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription 0 ; 183.56 6.2663e-14 355766000.0 206013.0 259574.0 248151.0 259599.0 235576.0 258115.0 240456.0 239491.0 289624.0 268518.0 False True 204903.8488981963 268213.76367420354 283088.5038328419 292464.2067827145 265575.20723165316 240272.1175873543 228824.2246488772 257363.03453065682 218250.0459627688 251380.95135017406 0.8151128707153508 1.0669613677314052 1.1261334731703643 1.1634302647510926 1.0564651211845661 0.9558087687107798 0.9102687511518114 1.0237968833690574 0.8682043917430567 1.0 17.939515806638237 2.7395706079921567 9.14535174081881 0.955462510751702 1.0578724564583202 0.18923111263754777 0.0954606980754154 0.17248897479440406 268.6334138739893 0.03059963317206059 0.030675943473657062 548.9978049145445 -2.7395706079921567 0.10240994570661821 FLESLPEEEQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLESLPEEEQQR 12 0 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 131.82 0.00044658 31786000.0 51867.0 49159.0 46188.0 48822.0 45841.0 57596.0 51498.0 48984.0 62076.0 50099.0 False True 51587.75383496542 50795.22759775696 52690.868926707124 55002.86019416754 51678.57962910579 53614.52408640044 49006.84499853566 52639.434815712 46778.20157578384 46901.638928088185 1.0999136706941566 1.0830160471713708 1.1234334264415633 1.1727278929101077 1.1018501871190864 1.1431268781162374 1.0448855545042952 1.1223367886231284 0.9973681654815174 1.0 15.517350716620863 1.235419110607289 24.999925666235605 0.9986840078076065 1.1109018570127727 0.6596212017018641 0.032389223724775894 49.43957146912956 393404.06567883573 0.026875146839275124 0.00782262884612168 17.195670339508414 -1.235419110607289 0.1122178492051662 FLEVDER ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEVDER 7 0 Q92696;H0YLH3 Q92696 RABGGTA Geranylgeranyl transferase type-2 subunit alpha 0 ; 102.72 0.019862 138460000.0 387200.0 491140.0 417050.0 447700.0 465600.0 486050.0 456620.0 447590.0 522780.0 513050.0 False True 385115.3582219644 507487.29799960076 475767.01493641577 504378.7740962849 524891.400172589 452450.5075386301 434531.54614220624 480991.4386159675 393947.8738931033 480306.70975579636 0.8018113226395892 1.056590065663717 0.9905483418674523 1.0501181096402497 1.0928254582149413 0.9420033040318565 0.9046959730442581 1.0014256075259063 0.8202006465689377 1.0 18.87359643721534 2.5191537134034756 24.969517071153142 0.9363485676300092 1.0053882732121586 0.11756465922971904 0.08758435578375692 993.4743510499649 590175.2188099391 0.027441019467603956 0.025869664372081623 330.48649213018336 -2.5191537134034756 0.06903970558214945 FLEVQYLTGGLIEPDTPGRVPLDEALQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLEVQYLTGGLIEPDTPGRVPLDEALQR 28 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 241.94 2.2491e-45 498500000.0 111480.0 127407.0 138275.0 129419.0 131478.0 192213.0 154111.0 134044.0 200779.0 159388.0 False True 110879.80406659248 131647.66497584217 157742.9180921543 145803.43213037096 148220.94396883954 178925.7677307328 146656.0621688091 144047.0439416401 151299.705750762 149215.721381068 0.7430839260122395 0.8822640386507236 1.0571467713466296 0.9771318382599732 0.9933332935496254 1.1991080167336463 0.9828459147027676 0.9653610397645158 1.0139662520169166 1.0 17.187040020509965 4.507951515879381 2.7338589531810307 1.0209025954719788 0.74127446264397 0.6553683668568793 0.06473133517336355 0.19226193979191586 2.5339262300534675 0.01689055807259034 0.09457511456234005 32207.092150574535 -4.507951515879381 -0.2796281328280088 FLFENQTPAHVYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLFENQTPAHVYYR 14 0 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 ; 182.33 1.5355000000000004e-06 913290000.0 474920.0 642820.0 668370.0 590340.0 485970.0 462760.0 603570.0 458220.0 750710.0 612980.0 False True 472363.0834885727 664215.8751071045 762470.6864238153 665076.9834710764 547855.3989301393 430770.4904198678 574373.0132386915 492414.703194013 565707.5794986263 573859.0916014195 0.8231342683277691 1.1574546518963986 1.3286723127380513 1.1589552090481008 0.954686275687096 0.7506555123449442 1.0008955537078585 0.8580759813700491 0.9857952723550211 1.0 19.130337007846492 3.1637543940879564 5.103274247544897 0.9080848562859893 1.1348651079903413 0.3178100484016284 0.13669453692654965 0.2179428778890906 10.242624572461118 0.040139449248734124 0.04888281715609531 1457.98949245455 -3.1637543940879564 0.226780251704352 FLGDIEVWDQAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLGDIEVWDQAEK 13 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ; 274.53 8.3292e-32 283300000.0 593200.0 557230.0 421280.0 349640.0 488680.0 514540.0 446730.0 531160.0 636360.0 545950.0 False True 590006.2771107161 575777.0636973518 480592.5621685968 393904.38815060334 550910.5013667118 478971.06089687673 425119.96322567546 570797.8563758286 479537.6047871291 511107.0035886889 1.154369384430351 1.1265293953215048 0.940297352206411 0.7706886921619962 1.0778770345515645 0.9371248242223786 0.831763134217955 1.1167873896620983 0.9382332885679548 1.0 18.96326583484839 4.263827550334027 6.820809823784492 0.9553574751783273 1.1429691372761182 0.37847084781535223 0.09675896096156743 0.17757790327584083 28.953745105760625 0.0239735267434958 0.06365907723218797 18358.092354142587 -4.263827550334027 0.1876116620977909 FLGEVHCGTNVR ddPTM_BT-474_Trastuzumab_2h_R1 4 FLGEVHCGTNVR 12 0 Q9Y2J8 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 ;;; 158.42 7.3502e-05 998240000.0 1064560.0 1318900.0 1185430.0 1230880.0 1152240.0 1245200.0 1352280.0 1051240.0 1256110.0 1250290.0 False True 1058828.5272437343 1362798.7892081132 1352328.2400577297 1386709.28179503 1298970.934138453 1159122.25488551 1286865.0501887402 1129688.866888559 946558.5215116605 1170495.4217728782 0.9045986063234586 1.1642922850086546 1.1553468855174507 1.1847199536198663 1.10976165303661 0.9902834588877402 1.0994191230920016 0.9651373648070216 0.8086819511672809 1.0 20.158687860887742 1.6078243208618626 3.5331864113736993 0.8990106455725031 1.0937543290740275 0.40679486261902265 0.09099454779292793 0.17184065669753232 5.027818342069569 0.0556750825115141 0.023789973153805998 40.534453386378374 -1.6078243208618626 0.19474368350152438 FLGQNLS(ph)VRTGRY(ph)RS(ph)ILQLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLGQNLSVRTGRYRSILQLVK 21 3 O43692 O43692 PI15 Peptidase inhibitor 15 3 FLGQNLS(0.73)VRT(0.73)GRY(0.758)RS(0.782)ILQLVK 51.819 0.058982000000000014 41253000.0 31401.0 48858.0 47028.0 43233.0 45945.0 51133.0 43993.0 39261.0 37676.0 50428.0 True False 31231.940504979062 50484.208994715285 53649.13362529619 48706.29336722061 51795.82341264948 47598.29606413493 41864.89052041979 42190.85518331844 28391.25463253482 47209.64186641712 0.6615585136898932 1.0693622531084597 1.1364020463679867 1.0317022422037931 1.0971450187910612 1.008232517391628 0.8867868694890618 0.8936914900286751 0.6013867826591398 1.0 15.526793918210403 1.9353456286229138 1.905565258031074 0.808789566052465 1.0154353922455892 0.1954777602349297 0.15374643829926007 0.48746661903673094 3.2818143228684593 0.09316115618250378 0.045065974911341955 86.16792375943545 -1.9353456286229138 0.20664582619312422 FLGTEPEPDAVGLDSGHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLGTEPEPDAVGLDSGHIR 19 0 Q16762 Q16762 TST Thiosulfate sulfurtransferase 0 ; 195.46 8.9244e-16 518560000.0 264310.0 370210.0 368590.0 341050.0 408030.0 668090.0 365830.0 235500.0 422510.0 406580.0 False True 262886.9843276015 382532.21605332906 420484.26815828716 384226.89503135526 459990.2019167132 621906.5108146976 348133.405293687 253074.20584476946 318388.0718439401 380631.71630934894 0.6906596929877138 1.0049930146715245 1.1047010801815291 1.0094452946718828 1.2084915213499121 1.6338799006156874 0.9146200654775449 0.6648794490869219 0.8364727851138347 1.0 18.53803625427208 2.009200337385297 24.99962376417876 0.7948486943827179 1.1180267532318375 0.22284442344231525 0.23289197253813476 260.63945172968585 708219.6542613845 0.0911306882376022 0.06721519388511887 102.14105454808576 -2.009200337385297 0.32317805884911965 FLHCTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLHCTEK 7 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 117.93 0.0051196 520580000.0 757080.0 821530.0 791650.0 753010.0 747500.0 930330.0 972410.0 878930.0 1217700.0 1005000.0 False True 753003.9653994951 848874.1294246268 903107.438854847 848340.9887921457 842689.6942203826 866018.4768612577 925370.8133330621 944520.2197161067 917614.1513440307 940860.039576212 0.8003357924932892 0.902232100118719 0.95987437117813 0.9016654476836542 0.8956589277614045 0.9204540956499068 0.983537162179694 1.003890249331392 0.9752929370423131 1.0 19.8436206009749 7.999999999999891 0.2120642544265245 1.0126780250483414 0.10597768529532162 0.6948705046836453 0.03297822195807421 31.551768648126334 0.3951137670645142 0.060076511295605824 9.687723945325992 99999999.99997485 -7.999999999999891 -0.9067003397530198 FLHDNMVEIPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLHDNMVEIPNR 12 0 P49916-3;P49916;P49916-4;P49916-2;K7EJR4 P49916-3 LIG3 DNA ligase 3 0 152.4 6.9772e-05 179510000.0 105940.0 125140.0 132490.0 127500.0 124520.0 134650.0 126330.0 109400.0 143800.0 131750.0 False True 105369.63081104062 129305.20925127242 151143.44037627577 143641.48692713038 140376.88391213663 125341.96243200604 120218.93527253489 117563.98352194375 108362.41682127904 123341.60220315006 0.854291082075384 1.0483503290179415 1.225405197245084 1.1645826255000753 1.1381146458672442 1.0162180496533626 0.9746827763314443 0.9531575836700235 0.878555287799817 1.0 16.912299966545824 2.400538785587971 2.5360055547499845 0.9462226089614327 1.0955498315749248 0.2990547225043554 0.09617794074377134 0.35584561939214193 4.680298148619156 0.040239793920039194 0.032205265991603435 251.50046107766084 -2.400538785587971 0.14932722261349207 FLHIMEDDS(ph)MEEKPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLHIMEDDSMEEKPLK 16 1 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 FLHIMEDDS(1)MEEKPLK;FLHIMEDDS(1)MEEKPLK 180.05 1.5272e-09 138172000.0 315260.0 269140.0 268517.0 250180.0 251789.0 369740.0 371430.0 306590.0 513970.0 350620.0 True False 313562.675188679 278098.16220143443 306321.85960839625 281852.76234846655 283852.8366796735 344180.74407434074 353462.51189960924 329469.30263247446 387308.9803451518 328243.1314191159 0.9552756636004298 0.8472322360535427 0.9332163578992624 0.8586707089038339 0.864763979835536 1.0485542914068626 1.0768314035131845 1.0037355578715612 1.179945422378444 1.0 18.32440529706676 2.7300470188758306 21.437242276532714 1.0584326433873017 0.8898108938974025 0.6982189179228324 0.055845563244277 48.57019141333194 122298.71862821322 0.016913474252935944 0.01624332816537401 537.0899412450589 -2.7300470188758306 -0.16862174948989916 FLHQDIDSGQGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLHQDIDSGQGIR 13 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 134.04 6.3535e-06 0.0 137780.0 195220.0 181110.0 203830.0 211130.0 199700.0 172090.0 148780.0 175090.0 174100.0 False True 137038.20778879715 201717.779687018 206608.71376366 229634.85710083935 238016.15403444725 185895.20904323514 163765.3492523593 159882.7190895318 131941.4155857979 162988.788945491 0.8407830297740748 1.2376175134013623 1.267625307853272 1.4088997076825762 1.4603222440903465 1.1405398509059714 1.0047645013616735 0.9809430459846048 0.8095122151617655 1.0 17.31441320767235 2.281615581281811 2.8042890044330515 0.9427242701356922 1.2560372902526449 0.4213174865399707 0.1625276620076876 0.26392087661220476 4.265199219135427 0.06884662593258081 0.051488046540853025 191.25622580440404 -2.281615581281811 0.3133130201169527 FLIATGERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLIATGERPR 10 1 E2QRB9;E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881-7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;E9PKD3 E2QRB9 TXNRD1 Thioredoxin reductase 1, cytoplasmic 0 ; 230.24 1.1375e-09 990810000.0 846170.0 852750.0 808740.0 730210.0 712280.0 816210.0 737670.0 477690.0 1119100.0 726710.0 False True 841614.3147383245 881133.2682517385 922603.5623059036 822654.5111298811 802984.6359856791 759787.323851672 701986.083926944 513337.6534606708 843312.8001717202 680330.7456322669 1.2370664123905917 1.2951542671099707 1.356110345194645 1.209197903242408 1.180285678900817 1.1167911030473303 1.0318306036199374 0.7545413120843147 1.2395629707841378 1.0 19.37587676355974 2.670248141425047 1.3592534797678957 0.9611094735303485 1.2839993157225376 0.5011378139074703 0.11753038970434397 0.3056369033124017 1.1488436293812607 0.05442502953282797 0.04848550237262223 468.00246595593114 -2.670248141425047 0.3228898421921891 FLIDGFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLIDGFPR 8 0 P30085;P30085-3;A0A494BXC7;P30085-2;Q5T0D2 P30085 CMPK1 UMP-CMP kinase 0 120.49 0.0034711 437640000.0 670760.0 821290.0 706210.0 763330.0 651480.0 746220.0 753680.0 623840.0 955450.0 791840.0 False True 667148.7026884427 848626.1411697107 805638.2295126398 859967.4997340116 734442.1163755113 694635.5678129344 717221.6190628042 670394.1085953324 719992.1498740682 741304.0932716687 0.8999663009333337 1.1447746597815038 1.0867850816215503 1.1600738584062504 0.9907433710963706 0.9370453692589669 0.9675133667445717 0.9043442693491919 0.9712507409698193 1.0 19.499705952000888 3.040942917847116 7.758660244444072 0.9489268801500503 1.0790283307601183 0.38328670809207555 0.06971687780626229 0.20414893027084538 32.76964239010376 0.019493470538363207 0.02324827747251331 1098.8613994283364 -3.040942917847116 0.13010145061006795 FLIIDEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLIIDEADR 9 0 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 0 ; 119.27 0.0019861 64022000.0 117427.0 142702.0 131531.0 135284.0 134529.0 137531.0 138633.0 132053.0 163900.0 142438.0 False True 116794.7860793663 147451.74980481953 150049.42151205332 152410.94052901908 151660.47073414564 128023.80568315067 131926.79216051102 141907.46541154702 123509.04114747995 133347.484892693 0.8758679338673171 1.1057707606819616 1.1252512308934859 1.142960743891546 1.1373328177594757 0.9600766432615779 0.9893459352958532 1.0641930406542155 0.9262195027290525 1.0 17.02483108847407 2.732882609216768 24.923926197412133 0.9980003821871782 1.085307399775955 0.23367854579947211 0.07934782684414246 708.4778078327294 3109897.417064732 0.02579703730819861 0.024948976461483127 540.6081755787872 -2.732882609216768 0.08730701758877679 FLISYDR ddPTM_BT-474_Trastuzumab_2h_R1 3 FLISYDR 7 0 Q8TBX8;Q8TBX8-3;F8VNT5;F8VU68 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 ;; 116.3 0.012765 1120120000.0 1086110.0 1517900.0 1348610.0 1367440.0 1234080.0 1337710.0 1334010.0 1041190.0 1577050.0 1382380.0 False True 1080262.5044381656 1568422.3839100744 1538482.5656717434 1540557.7637932189 1391232.773034771 1245237.2563306263 1269478.8398869177 1118888.884855692 1188407.15888733 1294155.3248849371 0.834723996158816 1.2119274663182507 1.1887928257827391 1.190396341281669 1.075012207795432 0.9622007748114314 0.9809323621952308 0.864570784774364 0.9182878871150886 1.0 20.30357934970964 2.718844117571964 2.393688023944749 0.9267040217026441 1.1212221293885667 0.3456694008628429 0.10590634878063705 0.2966069635316038 3.3572773002670364 0.03711078120720441 0.03644578590985289 523.4125330675806 -2.718844117571964 0.1945181076859226 FLIWDTAGQER ddPTM_BT-474_Trastuzumab_2h_R1 2 FLIWDTAGQER 11 0 Q9UL26;J3QR51;Q13636 Q9UL26 RAB22A;RAB31 Ras-related protein Rab-22A;Ras-related protein Rab-31 0 ; 125.57 0.0007574 230940000.0 411510.0 438730.0 415410.0 420750.0 462670.0 461240.0 448310.0 386310.0 476280.0 400180.0 False True 409294.47588305885 453332.8628321146 473896.1171915515 474016.9068595307 521588.2820400596 429355.5644421726 426623.5325894894 415138.4138424324 358907.1758250263 374640.1697886653 1.0925002412686873 1.2100487331292848 1.264936745728245 1.265259160882091 1.3922380035602904 1.146047858894502 1.1387554432034022 1.1080990436146025 0.9580050532955021 1.0 18.51514607142267 1.711634705211241 1.2546863606125522 0.9813301299444257 1.239707329641116 0.6141313515793383 0.07677843450431833 0.29775916941840963 0.885785894702005 0.06665921800256648 0.02551485180441824 51.479545646873056 -1.711634705211241 0.2583771996966904 FLKPVELR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLKPVELR 8 1 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 0 ; 88.948 0.012999 455520000.0 1244540.0 1330000.0 1229050.0 1139170.0 1167780.0 1386210.0 1268280.0 1238260.0 1607810.0 1360910.0 False True 1237839.5349213937 1374268.2459980207 1402089.556905892 1283388.8051982676 1316489.8610256573 1290384.5654873473 1206928.4510999012 1330665.2489568735 1211586.7690502135 1274055.5586663305 0.9715742194297654 1.0786564499876221 1.1004932613563463 1.0073256197254905 1.0333064771553186 1.0128165578886605 0.94731226035645 1.0444326700711557 0.9509685514174054 1.0 20.280996760940912 2.963673731881312 1.5252299420580278 0.9934780806627371 1.048830320047767 0.2412874751281301 0.042151367279665224 0.562389670563554 2.6746367056290588 0.015625723072469927 0.01807864938439126 919.7583343919882 -2.963673731881312 0.05535223938502998 FLKS(ph)PPLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLKSPPLHK 9 1 Q9NYF8-4;E9PJA7 Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 FLKS(1)PPLHK;FLKS(1)PPLHK 96.103 0.0045867 3200900000.0 2038310.0 1849880.0 1515920.0 1604480.0 1776280.0 2296970.0 2163370.0 2170570.0 3466600.0 2195900.0 True False 2027335.9654375324 1911452.137523924 1729348.359387154 1807607.0034889604 2002478.7291635906 2138185.8703857805 2058719.5282240456 2332548.955331132 2612302.880060122 2055755.7819954273 0.9861754899065349 0.9298050645240388 0.8412226659085718 0.8792907306014723 0.9740839581732208 1.0400972183137154 1.0014416820590146 1.1346430231450129 1.2707262715440255 1.0 20.971237455922456 2.3127955004885115 1.1398265304182305 1.1431538958795064 0.9103701460181922 0.5717771389427989 0.07694881082732592 0.3355118265200144 0.8516014218899489 0.049590774016764406 0.03005646826783587 205.49227511912483 -2.3127955004885115 -0.23278374986131423 FLLESFNNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLLESFNNDR 10 0 Q13618;Q13618-2;Q13618-3 Q13618 CUL3 Cullin-3 0 ; 146.88 6.4836e-05 1052650000.0 458600.0 535340.0 514740.0 498440.0 521460.0 569920.0 529520.0 452180.0 600460.0 548730.0 False True 456130.94855524943 553158.4682801368 587210.9177997144 561542.4528937947 587864.8400644291 530522.7718473742 503905.094637162 485923.9677235152 452484.6787517745 513709.58160861174 0.8879159838267711 1.0767921955981359 1.1430795508250853 1.0931126710453811 1.144352492362728 1.0327289792534415 0.9809143389135387 0.9459118247355058 0.8808180632622817 1.0 18.970593457232667 2.2003719505054224 2.333518929850383 0.9396459846881614 1.0754649371044784 0.3709139770923202 0.072502208208314 0.30385082446319167 3.347466214135275 0.03393663800164243 0.02251734466804539 158.6251152000944 -2.2003719505054224 0.13581895241631703 FLLHEPIVNK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLLHEPIVNK 10 0 B5MCF9;O00541-2;O00541 B5MCF9 PES1 Pescadillo homolog 0 98.249 0.0055058 252830000.0 333270.0 376040.0 341810.0 305530.0 307100.0 366440.0 358820.0 323380.0 462940.0 372330.0 False True 331475.7113497777 388556.2640790201 389933.8769342204 344210.06667330343 346207.364675692 341108.8653069756 341462.50577448733 347512.25769036764 348854.6400781847 348567.58063224953 0.9509654074786021 1.1147228992846583 1.1186751109410076 0.9874987973607808 0.9932288139009472 0.9786018099797321 0.9796163635043894 0.9969724007609437 1.0008235402885561 1.0 18.411078868811334 3.7111753437264516 24.186014390869193 0.9901504245919514 1.0667813148884862 0.3534625216376345 0.04350057602544311 455.31390389638943 402122.13769563026 0.011252062202531225 0.0174363816706286 5142.512354482671 -3.7111753437264516 0.0766308902965348 FLLSLPEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLLSLPEHR 9 0 Q15008;Q15008-4;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 143.37 0.00010209 1488830000.0 1459220.0 1864050.0 1674270.0 1791360.0 1526330.0 1622250.0 1621860.0 1421130.0 1972320.0 1607990.0 False True 1451363.7216545823 1926093.777407982 1909992.6629842804 2018145.9923277237 1720699.0782333077 1510107.6758657412 1543404.4356931348 1527181.9369519176 1486268.163733972 1505366.7015305012 0.964126362154142 1.2794847763337192 1.2687889675269137 1.3406341393601182 1.1430431379170793 1.0031493816957822 1.0252680852605287 1.0144916420691628 0.9873130329127702 1.0 20.521683534075557 2.8865977415431243 3.8050213396183676 1.0095123643313226 1.2238858517356725 0.5211699695078833 0.09382059665087163 0.18634504268847032 4.797207149703754 0.029344183485708678 0.03164559747627586 770.1897623899287 -2.8865977415431243 0.21437348740434992 FLMECRNS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLMECRNSPVTK 12 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 FLMECRNS(0.999)PVT(0.001)K;FLMECRNS(0.999)PVT(0.001)K 135.47 7.703899999999999e-05 1351150000.0 212010.0 363610.0 295680.0 454930.0 371960.0 356600.0 409750.0 305760.0 716370.0 404660.0 True False 210868.56171652558 375712.53904311295 337309.17390336824 512524.09135497676 419326.90122035274 331949.0813461078 389928.82710299414 328577.36381782003 539830.2123662011 378834.25235314446 0.5566248574586561 0.9917596856919857 0.8903872123709999 1.3528979710029185 1.1068875071767839 0.8762383002175557 1.029286091954292 0.8673380555661171 1.424977306072573 1.0 18.531207252619005 5.026167892896919 1.5799365346113154 1.058397600452127 0.003967816747155004 0.4199087583380442 0.17992647014425578 2.372885787942496 3.140733483612681 0.046995559853572504 4.790879972989293 106210.60749682605 -5.026167892896919 -1.0544297837049719 FLMPEAYPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLMPEAYPSSPR 12 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 FLMPEAYPS(0.5)S(0.5)PR 115.14 0.0010304 21800000.0 64980.0 86722.0 71421.0 69025.0 61387.0 71985.0 78045.0 59129.0 77026.0 80176.0 True False 64630.15489995672 89608.48934544394 81476.45599753941 77763.55792270729 69204.27058074469 67008.84638446315 74269.66518914746 63541.5062309782 58043.9743955204 75059.09903787292 0.861056896877299 1.1938391280213712 1.0854973886167811 1.0360310597849005 0.9219970858673107 0.8927478113033596 0.9894825030030386 0.846553010167585 0.7733103000108339 1.0 16.1957393526761 3.232926926638716 3.1217208659262505 0.8954658443333904 1.061923464554087 0.328696727298742 0.09768965742901932 0.25768640865702563 5.192995336623639 0.028271079824566572 0.037087087827966186 1709.7276161664724 -3.232926926638716 0.16645762022069654 FLMPEAYPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 FLMPEAYPSSPR 12 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 FLMPEAYPS(0.11)S(0.89)PR;FLMPEAYPS(0.112)S(0.888)PR;FLMPEAYPS(0.108)S(0.892)PR;FLMPEAYPS(0.002)S(0.998)PR;FLMPEAYPS(0.016)S(0.984)PR 202.61 1.4136e-07 578295000.0 1062006.0 1229369.0 1058724.0 1099462.0 1063533.0 1196905.0 1172611.0 992076.0 1325940.0 1170926.0 True False 1056288.277695958 1270287.8039957464 1207783.1366060255 1238653.7764696216 1198967.6234960344 1114165.77456131 1115887.3261209715 1066109.7487798529 999179.8536857223 1096196.5001998157 0.9635939154188294 1.1588139569540654 1.1017943738972618 1.1299559670586785 1.093752464341462 1.0163923843564715 1.0179628615102918 0.9725535053117953 0.9114970295048296 1.0 20.064075003072986 2.3232416166358854 1.3649866662654042 0.9601363360519133 1.096779208164941 0.5106896700857071 0.05343160685244925 0.3223113128351548 1.1924891358182939 0.029397140225531575 0.01861832603969378 210.49491875272793 -2.3232416166358854 0.13664287211302772 FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR ddPTM_BT-474_Trastuzumab_2h_R1 5 FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR 34 0 D6RFH4;H3BUX2;O43169 D6RFH4 CYB5B Cytochrome b5 type B 0 ;;;; 298.75 3.424599999999998e-90 287634000.0 189669.0 298347.0 374637.0 288817.0 423234.0 463767.0 308850.0 296232.0 338003.0 374388.0 False True 188647.84317820694 308277.29954043013 427382.633196821 325381.2025869256 477130.34119554475 431707.87888008985 293909.745578425 318338.3360756167 254706.68965815558 350494.2373103074 0.538233794158473 0.8795502656652788 1.2193713553653696 0.9283496501508863 1.3613072353401379 1.2317117741878323 0.8385579969413712 0.9082555494165752 0.7267072109737798 1.0 18.41903119863794 -1.3280225025954142 2.9671968466368357 1.000248488086218 0.9734694729616539 0.0 0.23689813043720084 92579211.97105628 117369664.55468851 218636.363060527 0.059023807429943266 0.046986976207648516 1.3280225025954142 -0.026779015124564043 FLNNFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLNNFDR 7 0 Q04446;E9PGM4 Q04446 GBE1 1,4-alpha-glucan-branching enzyme 0 147.34 0.020368 0.0 72705.0 89597.0 87089.0 86315.0 77493.0 93267.0 86302.0 74215.0 102630.0 82440.0 False True 72313.5643582849 92579.18198246973 99350.374208842 97242.47014992365 87361.27421300343 86819.67181690237 82127.24255434427 79753.30015613406 77338.21167154286 77178.60861956509 0.9369638252321787 1.1995445841582655 1.287278638289111 1.2599666136669934 1.131936371691171 1.1249188521246964 1.0641192426669983 1.033360170423133 1.0020679700610373 1.0 16.235913414673142 2.213913566410829 1.3509811151399844 1.008875920865491 1.1782047708916223 0.3605110011941075 0.08903110949587544 0.4787151911363243 1.692629564490439 0.057186865962025685 0.03243711794633807 163.64907934822068 -2.213913566410829 0.1693288500261314 FLNRS(ph)PEESFDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLNRSPEESFDIK 13 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 FLNRS(1)PEESFDIK 137.44 3.6762e-05 92136000.0 100390.0 100480.0 91870.0 95066.0 94118.0 123460.0 119260.0 105280.0 142440.0 121290.0 True False 99849.51139437757 103824.41605855736 104804.49745164505 107101.34585266352 106103.36941890827 114925.5007935793 113490.93818255773 113136.52820100765 107337.57059821274 113549.16835840656 0.8793504420852524 0.914356463896292 0.9229878031412803 0.9432155902243939 0.9344266536942273 1.012121026116444 0.9994871809570192 0.9963659781629007 0.9452959642946258 1.0 16.792957614126735 3.466936355960517 0.900526282251529 0.9916866889342073 0.892295451316446 0.7388518937439555 0.021701082123638672 0.329361072696224 0.5463722796830973 0.009514725455031816 0.021811964083419094 2930.4637665763325 -3.466936355960517 -0.09939123761776125 FLPEEEKLTEQER ddPTM_BT-474_Trastuzumab_2h_R1 1 FLPEEEKLTEQER 13 1 A0A1B0GUA3;Q96EK5;A0A1B0GUH6;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GV79;A0A1B0GW21 A0A1B0GUA3 KIAA1279;KIF1BP KIF1-binding protein 0 89.624 0.0067163 70580000.0 90234.0 98373.0 99517.0 98989.0 97026.0 113800.0 110370.0 109260.0 145600.0 109790.0 False True 89748.19016993995 101647.28583726581 113528.12858272954 111520.99725042912 109381.68598184206 105933.27385638528 105030.98144565581 117413.53601103823 109718.83094004323 102783.10820405209 0.8731803478035095 0.9889493284778724 1.1045407223660302 1.0850128897545108 1.0641990487842616 1.0306486708504599 1.0218700648470476 1.142342725985099 1.0674792079864124 1.0 16.649243660051823 4.575840981981844 2.843215302867162 1.0703360739714785 0.8671231264191085 0.6827449500498552 0.03999106648718361 0.1732042808090515 2.304412663117166 0.010183441581518305 0.06677580715814624 37656.58931881419 -4.575840981981844 -0.20321294755236996 FLPLFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLPLFDR 7 0 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 10 kDa heat shock protein, mitochondrial 0 ; 158.38 0.0033101 1828900000.0 592520.0 694620.0 744080.0 632720.0 673350.0 949820.0 608180.0 514110.0 879390.0 613650.0 False True 589329.9381551612 717740.0067933437 848839.9963406984 712822.2871257566 759097.131241866 884161.179035782 578760.0099267815 552475.4987976828 662676.1177222858 574486.3316278036 1.0258380499415858 1.2493595883467439 1.4775634329462901 1.2407993852629686 1.3213493332225483 1.5390465018210555 1.0074391296427687 0.9616860634999735 1.1535106776946231 1.0 19.13191304263045 2.20561609674782 24.962892156825568 1.0197027440372588 1.3114064208406142 0.49163608457794594 0.13846322456223045 154.89100944087684 117363.90801832432 0.05236353823163895 0.03867560329929059 160.55213929543498 -2.20561609674782 0.2917036768033554 FLPLNIRNS(ph)PFTR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLPLNIRNSPFTR 13 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 FLPLNIRNS(1)PFTR;FLPLNIRNS(0.993)PFT(0.007)R 202.76 5.5303e-08 944940000.0 523410.0 701750.0 637480.0 821230.0 681820.0 625240.0 671530.0 571410.0 908910.0 727390.0 True False 520592.0187163175 725107.3245331673 727231.6429245085 925197.6337973917 768645.7355362434 582018.6304566461 639045.5284062811 614051.5157611878 684921.3092700198 680967.3474500906 0.7644889592220465 1.0648195207132334 1.067939080556001 1.3586519783390953 1.1287556421236173 0.8546938889743217 0.9384378425767589 0.9017341551845741 1.0058063897406166 1.0 19.377226096754598 2.7473217474453286 24.843605501552478 0.931333831335243 1.0914097892515566 0.1863423567354513 0.14071593737714172 926.695287098941 2627793.6693722885 0.04506392601976712 0.04713961524744717 558.8840911660435 -2.7473217474453286 0.16007595791631368 FLPS(ph)PVVIK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLPSPVVIK 9 0 Q13618;Q13618-2;Q13618-3;A0A087WTG3;H7C399 Q13618 CUL3 Cullin-3 1 FLPS(1)PVVIK;FLPS(1)PVVIK 106.29 0.0031045 446600000.0 950720.0 987640.0 843610.0 883220.0 806520.0 1115480.0 1013640.0 1033920.0 1255490.0 1035570.0 True False 945601.4291549231 1020513.0003590118 962382.9552104301 995035.5614414138 909225.5413814365 1038369.4931574765 964606.3607191679 1111076.3605393788 946091.3122040861 969479.036003918 0.9753706826426947 1.0526406064080045 0.9926805216719928 1.0263610913577224 0.9378496157370875 1.0710592540892034 0.994973924031576 1.1460550659446014 0.9758759881015752 1.0 19.886850176296278 2.690799920050172 24.999308159523274 1.0511939624012483 1.0014659419594574 0.09684039298128111 0.05375070001305473 707.4630949845248 370305.81719772203 0.016831528691595196 0.015868942685892947 490.68176643770806 -2.690799920050172 -0.04972802044179092 FLPVFDIVIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLPVFDIVIHR 11 0 Q5JWT2;Q9ULK4-4;Q9ULK4-5;Q9ULK4-3;Q9ULK4 Q5JWT2 MED23 Mediator of RNA polymerase II transcription subunit 23 0 120.06 0.00050243 85217000.0 49379.0 67855.0 58757.0 62958.0 53452.0 59140.0 60862.0 52524.0 78439.0 65793.0 False True 49113.14895052266 70113.51265578636 67029.47487500058 70928.47634477071 60258.795365174454 55051.79100058551 57917.87254458186 56443.607591467786 59108.759478750406 61594.03441177876 0.7973685994033644 1.13831661337609 1.0882462159709154 1.1515478247550366 0.9783219420621526 0.8937844634846298 0.9403162676011705 0.9163810770069309 0.9596507201263457 1.0 15.910503007396336 3.0101755988642633 24.660699282312276 0.9351965472524549 1.0551794240133683 0.1979738828451718 0.09521091488485572 241.19081103281582 584523.2952764593 0.02665785962520754 0.03182778795712197 1023.7068253516363 -3.0101755988642633 0.11998287676091335 FLQDYFDGNLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLQDYFDGNLK 11 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 100.48 0.009306299999999998 301220000.0 531750.0 571960.0 459130.0 505940.0 449100.0 607870.0 543860.0 462530.0 660160.0 530190.0 False True 528887.117082979 590997.3428428783 523771.51317049953 569991.9521248027 506290.22297575185 565849.3776720654 517551.41405304207 497046.3372797496 497472.4136907901 496352.82028150395 1.0655467149013544 1.1906799330921445 1.0552403285901453 1.148360458194908 1.0200208446254257 1.140014430362553 1.0427087203000387 1.0013972258641592 1.0022556402694582 1.0 18.921006464238822 2.0296061905336864 4.2504719497807875 1.0048382045459365 1.103285304293666 0.49413355829544325 0.046730333691552856 0.1661634888733436 6.842663145825949 0.018224031171533952 0.012217683715988003 107.0548113564266 -2.0296061905336864 0.09844709974772936 FLQDYFDGNLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLQDYFDGNLKR 12 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 170.66 6.5022e-05 17992500000.0 4154600.0 4853700.0 4516500.0 4590800.0 4499800.0 5234800.0 5753800.0 4725000.0 6738700.0 4874500.0 False True 4132232.095219453 5015252.470376386 5152383.941878254 5171994.8092946755 5072822.857595828 4872930.5973937325 5475466.712349489 5077603.493063842 5078037.678953779 4563405.236730595 0.9055150443268432 1.0990153646686684 1.129065615388921 1.133363035056711 1.111631028681161 1.0678277173746888 1.1998642303948293 1.1126786313418966 1.1127737764950034 1.0 22.121679342122146 4.737854697372067 4.183830830856328 1.1164834815895437 0.8886557947987728 0.60761714316462 0.048361194898179784 0.12809454807097478 5.056632534523187 0.010685247218606008 0.08758475572106075 54683.29774650335 -4.737854697372067 -0.22782768679077092 FLQEFYQDDELGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLQEFYQDDELGKK 14 1 P33993;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 222.27 6.3425e-12 383740000.0 473100.0 341810.0 332230.0 284240.0 305090.0 549920.0 477690.0 422140.0 748850.0 505340.0 False True 470552.8821663511 353186.939221492 379005.096205073 320224.75485621655 343941.4030898952 511905.32477243745 454582.3097469903 453642.23038348596 564305.9515759024 473088.7685566598 0.9946397239612231 0.746555324699475 0.8011289242003664 0.6768809072199832 0.727012404329998 1.0820492025929986 0.9608816356682264 0.9588945257937469 1.1928119817714884 1.0 18.851751385149107 2.739177755564971 24.999517729029275 1.0234706041060875 0.7812898294020897 0.6027754371861749 0.10085226984244657 40.21200085447057 1628963.4662972915 0.031759397265381704 0.0318989302879446 548.5014191410992 -2.739177755564971 -0.2421807747039978 FLQEHGSDS(ph)FLAEHK ddPTM_BT-474_Trastuzumab_2h_R1 4 FLQEHGSDSFLAEHK 15 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 FLQEHGS(0.001)DS(0.999)FLAEHK;FLQEHGS(0.008)DS(0.992)FLAEHK;FLQEHGS(0.002)DS(0.998)FLAEHK;FLQEHGSDS(1)FLAEHK 249.06 2.9171e-18 1496880000.0 915000.0 920640.0 928220.0 882210.0 882780.0 1083250.0 1174570.0 873730.0 1304630.0 1114070.0 True False 910073.7416660578 951282.9458613686 1058905.3077671262 993897.6955449703 995196.8003530034 1008367.4771962159 1117751.5618068657 938932.1693110425 983121.4176463512 1042969.0987966865 0.8725797751017215 0.9120912086071392 1.0152796559254018 0.95295028078173 0.9541958640013402 0.9668239244668017 1.0717015135889056 0.9002492695079122 0.942617972843698 1.0 19.992264983487512 4.431191404827213 5.930163502713875 0.9713541959006615 0.8814880537351516 0.37354897424987976 0.04411045341671134 0.1725248834344441 14.249410196451803 0.01079104376945914 0.03139317306886766 26989.286581313194 -4.431191404827213 -0.08986614216550992 FLQEHGSDSFLAEHK ddPTM_BT-474_Trastuzumab_2h_R1 7 FLQEHGSDSFLAEHK 15 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ;;;;;; 246.27 2.1224e-18 4191990000.0 1511597.0 2349720.0 2731610.0 2642580.0 2521320.0 3109990.0 3177720.0 2282030.0 3173890.0 3051280.0 False True 1503458.7297062154 2427929.0097642667 3116196.9444202455 2977130.3570501707 2842395.1569655305 2895003.7114289985 3024001.543530748 2452326.6665135403 2391727.3374470747 2856544.6980677657 0.5263207436323998 0.8499530959226982 1.0908973160924507 1.04221381834633 0.9950466235967509 1.0134634733309957 1.0586221687958373 0.8584940638850679 0.8372798573972589 1.0 21.445839674137048 4.663723627788014 3.077287354422945 0.9822482944546378 0.4905830902095135 0.7604457636159074 0.0780225462656825 0.15326734692913402 2.295422675107875 0.020894538536493566 0.1645795128008695 46102.409903794134 -4.663723627788014 -0.4916652042451243 FLQHGTLVGLLPVPHPILIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLQHGTLVGLLPVPHPILIR 20 0 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 0 158.65 1.5426e-11 61109000.0 53269.0 65402.0 67949.0 67420.0 57497.0 68181.0 74410.0 58925.0 74852.0 68494.0 False True 52982.20562274231 67578.86603365609 77515.62857670436 75955.36508727171 64818.90213858109 63467.80795081034 70810.50402619588 63322.28271508722 56405.72756541297 64122.65427933634 0.8262634511655881 1.053900010739785 1.2088649393555115 1.1845324548854255 1.0108580636137066 0.9897875979108209 1.1042977684255768 0.9875181155046627 0.8796536606188156 1.0 15.968546524885635 1.5349986493196486 4.897406754492878 0.9374591197625214 1.0605456792325478 0.16379490757380832 0.10445077972228033 0.26545717991647144 13.888606258391535 0.06400137224060944 0.027977312220376162 34.27667205209452 -1.5349986493196486 0.12308655947002645 FLQPVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLQPVHK 7 0 A0A2R8YFH5;Q15437;Q5QPE2 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ; 96.964 0.012345 1114490000.0 1611310.0 1750040.0 1620700.0 1556200.0 1594610.0 1831160.0 1837430.0 1715780.0 2277000.0 1914960.0 False True 1602634.8859933692 1808289.0234784798 1848880.4726230653 1753214.7604392173 1797674.1315060386 1704576.219286982 1748546.4912357635 1843820.2161543046 1715863.8602368038 1792745.6133202598 0.8939555473379207 1.0086701705153989 1.0313122279512044 0.9779495470035878 1.002749145304922 0.9508187924833443 0.9753455695241462 1.028489598554617 0.9571150795114389 1.0 20.77373935678394 4.7437987924476746 24.5811111879675 0.993953602392442 0.893955493836791 0.5640668189711909 0.025959541407127678 323.00667054303915 1515708.663922014 0.00622765434572011 0.052262622800742904 55436.881576030355 -4.7437987924476746 -0.09999810855565106 FLRPHYGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLRPHYGK 8 1 Q13200;C9JPC0;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ; 99.375 0.0041205 1565650000.0 3153200.0 3452300.0 3338100.0 3027300.0 3036600.0 3594200.0 3484100.0 3118500.0 4618500.0 3497300.0 False True 3136223.5215534563 3567207.718540577 3808075.4647146636 3410555.869603935 3423293.0106616956 3345741.4138367344 3315560.772445493 3351218.3054221324 3480332.5597293274 3274099.3198108333 0.9578889383644773 1.0895233681385936 1.1630910038900963 1.0416775841121966 1.0455678573793181 1.0218814663295066 1.0126634682044573 1.023554259684387 1.0629893047747891 1.0 21.642666655957623 3.49480612177095 24.547175361903882 1.0286240221794551 1.0771501531153294 0.12378516365316938 0.049371518415141334 1064.6757295665182 1477801.2749581037 0.013239714864072445 0.020043615297427653 3124.6841307261348 -3.49480612177095 0.04852613093587421 FLRT(ph)AEADGGLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLRTAEADGGLAR 13 1 Q8NC60 Q8NC60 NOA1 Nitric oxide-associated protein 1 1 FLRT(1)AEADGGLAR;FLRT(1)AEADGGLAR 72.29 0.064586 417780000.0 7875.200000000001 17046.3 11022.2 13371.099999999999 11765.9 10533.0 12333.2 10413.400000000001 15715.7 12847.5 True False 7832.800798216971 17613.675790794056 12574.029953320152 15063.879889030231 13264.217623046969 9804.878502015 11736.595998600718 11190.500786173763 11842.776314590932 12027.561550701868 0.6512376399154564 1.4644427897162755 1.0454346793666083 1.2524467096284515 1.1028185195421374 0.815200858518395 0.9758084337482213 0.9304047822994297 0.984636517108478 1.0 13.55405656193904 2.8889888836196986 7.364223950108314 0.939834223833575 1.1313463121031246 0.13926598450956718 0.1964953459934443 0.43594466096140105 25.83222153527479 0.05538669794561229 0.058875471969482535 774.4419746132993 -2.8889888836196986 0.19151208826954969 FLSAIVSSVDKIPYGMR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLSAIVSSVDKIPYGMR 17 1 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 92.38 0.0030306 68959000.0 69369.0 76552.0 74743.0 77714.0 63339.0 101530.0 95247.0 69796.0 126070.0 72615.0 False True 68995.52501162037 79099.98704333873 85266.16472219783 87552.58443180408 71404.84621033429 94511.4700759122 90639.538731126 75004.53193690661 95001.73775145107 67980.64853117081 1.0149289025976886 1.1635662317500461 1.2542711281005385 1.2879045187640281 1.0503701825909089 1.39027020362385 1.3333138281192702 1.103321806388993 1.397482074739114 1.0 16.0528365047159 4.661676053696695 2.6522354216484105 1.23095907982747 0.9902667461863058 0.1945180475234919 0.13035491253737033 0.5899199474216928 6.069779236363159 0.030282729415056536 0.2884078326885561 45885.561835724206 -4.661676053696695 -0.24069233364116427 FLSAQSHST(ph)SPQGLDSPLPLEGSGAHQVLHNESK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLSAQSHSTSPQGLDSPLPLEGSGAHQVLHNESK 34 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 FLSAQSHS(0.016)T(0.492)S(0.492)PQGLDSPLPLEGSGAHQVLHNESK 229.34 1.6479e-36 1051300000.0 548290.0 618350.0 635600.0 679520.0 668950.0 727540.0 725840.0 350150.0 804110.0 659440.0 True False 545338.0675607458 638931.4059495323 725086.955265762 765547.1623272445 754136.8173227089 677246.8722449436 690728.3462219336 376279.97102567327 605947.8650219664 617353.9746250124 0.8833474634904394 1.0349514738892323 1.1745076326854265 1.2400457335554473 1.2215630713008367 1.0970154888146801 1.1188529994343839 0.6095044115561576 0.9815241983175468 1.0 19.235738404660083 1.7709413418382072 24.999999999998593 0.8246844126189026 1.118420706484328 0.38821857023781436 0.13888785515647328 25.210167691003676 19473.53155028891 0.06446558204740283 0.03576123141603843 59.01213698047798 -1.7709413418382072 0.2937362938654253 FLSAQSHSTS(ph)PQGLDSPLPLEGSGAHQVLHNESK ddPTM_BT-474_Trastuzumab_2h_R1 1 FLSAQSHSTSPQGLDSPLPLEGSGAHQVLHNESK 34 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 FLSAQSHST(0.019)S(0.981)PQGLDSPLPLEGSGAHQVLHNESK 293.37 4.2891e-90 1300200000.0 702560.0 808240.0 908330.0 958760.0 980210.0 1042800.0 1008100.0 487960.0 1228400.0 947090.0 True False 698777.4950217548 835141.7798086033 1036214.9686541074 1080138.9176961218 1105033.9333401502 970713.6904871593 959334.3516840211 524374.0530106742 925677.2797166846 886645.9053554572 0.7881133728820573 0.941911280212583 1.1686908633934172 1.2182303117534763 1.2463080545069918 1.0948155116083227 1.0819813703413235 0.5914131558532965 1.044021377785058 1.0 19.757998533211367 1.8966844938900769 15.31366603574642 0.8338218908117271 1.0885812782108115 0.2074429568019842 0.170439757545983 2.1345764308081634 311.7142526878438 0.07275338226606277 0.046820737120100896 78.82872349032317 -1.8966844938900769 0.25475938739908444 FLSAQSHSTSPQGLDS(ph)PLPLEGSGAHQVLHNESK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLSAQSHSTSPQGLDSPLPLEGSGAHQVLHNESK 34 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 FLSAQSHSTSPQGLDS(1)PLPLEGSGAHQVLHNESK;FLSAQSHSTSPQGLDS(1)PLPLEGSGAHQVLHNESK 254.98 3.0615999999999996e-59 513270000.0 179044.0 278556.0 279210.0 258303.0 304320.0 311760.0 293230.0 160590.0 268880.0 286080.0 True False 178080.04699765836 287827.5680693423 318520.34106317384 291004.1333155966 343073.34815404314 290208.7650041012 279045.3446526198 172574.0412594968 202618.12680740963 267822.12947458995 0.6649190914395816 1.0746967348590601 1.1892980676691765 1.0865574621726921 1.2809746111237337 1.0835876989456736 1.0419054810745005 0.644360649353548 0.7565398990923689 1.0 18.030915646317204 1.8340492288594867 6.742446864401712 0.7697402810879488 1.0781080185670657 0.3191437243515154 0.17140051273712475 0.2434591681032534 14.280090684943467 0.0752435722526632 0.045619341580914526 68.24160440988649 -1.8340492288594867 0.30836773747911694 FLSAQSHSTSPQGLDSPLPLEGSGAHQVLHNESKGSPTS(ph)AYPER ddPTM_BT-474_Trastuzumab_2h_R1 1 FLSAQSHSTSPQGLDSPLPLEGSGAHQVLHNESKGSPTSAYPER 44 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 FLSAQSHSTSPQGLDSPLPLEGS(0.012)GAHQVLHNES(0.057)KGS(0.255)PT(0.255)S(0.335)AY(0.085)PER 133.17 5.748300000000001e-10 429010000.0 61972.0 108480.0 114660.0 134010.0 125090.0 142790.0 143240.0 79465.0 167820.0 149650.0 True False 61638.349637736465 112090.69122245531 130803.13135741402 150975.6522596451 141019.4700334818 132919.26339150514 136310.93397006195 85395.08181509374 126463.00967278906 140099.20887818903 0.4399621534717493 0.8000808292922905 0.933646466705907 1.0776338672327033 1.006568639199761 0.948750991927966 0.9729600549606183 0.609532933832207 0.902667550269637 1.0 17.096089283519348 4.7114926724148605 2.679320294380715 0.911634123268528 0.36264375228788526 0.6040906845982512 0.11909279344638647 0.3444949599671905 3.431109972453924 0.03442550792505232 0.40924823255862786 51462.71239518051 -4.7114926724148605 -0.5489903709806427 FLSDPQVHTVLVER ddPTM_BT-474_Trastuzumab_2h_R1 3 FLSDPQVHTVLVER 14 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 174.83 2.4802e-06 1544730000.0 1744170.0 2297200.0 2166820.0 2265400.0 2124650.0 2283560.0 2351410.0 2040030.0 2565870.0 2392560.0 False True 1734779.5825155044 2373660.913313277 2471889.421662934 2552199.407723302 2395211.5837128246 2125702.872122033 2237663.315041488 2192267.397662441 1933545.7193964894 2239864.772426328 0.7745019270231697 1.0597340261492727 1.103588686287193 1.139443523172445 1.0693554419886775 0.9490317890125887 0.999017147190339 0.9787498891228475 0.8632421667590141 1.0 21.09498020426823 2.7316594495743693 24.359093713672415 0.9619735197311751 1.0412576144900691 0.1076660991795787 0.09941335866914777 842.3366322068421 2973188.913808979 0.032515124308446455 0.03128056331654192 539.0877330638897 -2.7316594495743693 0.07928409475889409 FLSHS(ph)TDSLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLSHSTDSLNK 11 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36 Q12802-2 AKAP13 A-kinase anchor protein 13 1 FLS(0.04)HS(0.959)T(0.001)DSLNK;FLS(0.001)HS(0.678)T(0.238)DS(0.083)LNK 148.52 2.241e-05 377338000.0 547530.0 503710.0 456537.0 485350.0 425660.0 585910.0 613650.0 500790.0 726330.0 575150.0 True False 544582.1593163016 520475.6828508745 520813.44130926003 546795.2602359437 479865.27791551594 545407.4207837855 583965.4051293528 538161.4927600936 547335.7038233635 538443.4345893109 1.0114008720928558 0.9666301962579579 0.9672574830566968 1.0155110548483204 0.8912083370122722 1.0129335520634333 1.084543644913719 0.9994763761407318 1.0165147695427563 1.0 19.038435266887127 2.4957103907916585 24.9872480304496 1.0275027742700762 0.9704782213204923 0.3171352839497279 0.038636502440323926 846.1628105706297 1137400.3680562873 0.012179749698845714 0.011283473500532106 313.11969897266715 -2.4957103907916585 -0.05702455294958386 FLSLYGDQIDMHR ddPTM_BT-474_Trastuzumab_2h_R1 3 FLSLYGDQIDMHR 13 0 Q96CN7;D6RGE2 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 0 ;; 210.64 2.8292000000000006e-08 1686190000.0 1572430.0 1990350.0 1814780.0 1786010.0 1704370.0 1752780.0 1861030.0 1621610.0 1947350.0 1840590.0 False True 1563964.211593396 2056597.596558019 2070285.2496494667 2012118.6828762693 1921411.4169075496 1631614.444200308 1771004.8690750075 1742622.7725687304 1467451.685653114 1723121.970391623 0.9076340726117871 1.193529902059461 1.2014734216283842 1.167716921640181 1.1150756881539037 0.9468943419190938 1.027788455783256 1.0113171339650875 0.8516238031133678 1.0 20.716593395002615 2.7827408944890157 6.627253093359553 0.9768508271953281 1.1295441613432404 0.40319866692270157 0.09002094702188111 0.2292335562730085 27.119502235733627 0.027588195119204423 0.02904023290697312 606.3744510792454 -2.7827408944890157 0.1526933341479123 FLSNGHVTIPGQQDKDMFQETMEAMR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLSNGHVTIPGQQDKDMFQETMEAMR 26 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 173.35 2.2832e-12 2303900000.0 1337180.0 1610340.0 1677610.0 1816550.0 1640440.0 2045130.0 2122000.0 1877640.0 2307900.0 2051930.0 False True 1329980.7714546632 1663939.193428913 1913802.90595248 2046525.0437449322 1849340.3103503461 1903754.9768181846 2019350.7531727937 2017759.031262729 1739148.9692755912 1920974.0706543452 0.6923470710885906 0.8661955509176248 0.9962669122861078 1.0653579738574088 0.9627096682884437 0.9910362695159673 1.051211874236771 1.0503832727817173 0.9053474463000853 1.0 20.873406614933103 4.565762782425807 2.030734490514361 1.0109104385405374 0.6576657810089842 0.8217105285742377 0.045253488344619855 0.1892156375408697 1.1130729244747164 0.011731547906347058 0.10827850194476661 36792.79514776417 -4.565762782425807 -0.3532446575315532 FLSPQDTFEALKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FLSPQDTFEALKR 13 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 175.28 2.972e-05 494540000.0 439250.0 439720.0 421850.0 417940.0 402570.0 468720.0 504890.0 485530.0 625070.0 504280.0 False True 436885.1268052632 454355.8143836471 481242.8132140688 470851.1611476466 453834.90328066825 436318.48964819824 480466.54183289985 521762.71407138393 471029.8740088791 472096.4186641716 0.9254150413626498 0.9624216503681119 1.0193739968961797 0.9973622813745368 0.9613182505489546 0.9242147840959917 1.0177296900332606 1.1052037114531528 0.9977408329885019 1.0 18.848722013097767 2.0098778951867717 18.42121590788177 1.049869806777492 0.9688636609750301 0.38028842440045896 0.039508823614127116 7.455064799749639 13901.357003276706 0.015073044601312507 0.011087133789600205 102.3005327018066 -2.0098778951867717 -0.08100614580246202 FLSPVVPNYDNVHPNYHK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLSPVVPNYDNVHPNYHK 18 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ; 153.95 1.7074e-08 1238220000.0 1957960.0 2052150.0 1909270.0 1812130.0 1840640.0 2146860.0 2162720.0 897960.0 2586400.0 1823890.0 False True 1947418.560909808 2120454.5721991304 2178078.6203276627 2041545.4721981226 2075034.593671982 1998452.6213648482 2058100.9712072907 964970.3349484896 1949016.3759843942 1707487.7786892098 1.1405168372009 1.241856368557404 1.275604222479245 1.195642802061728 1.2152558979162518 1.1704052270868983 1.205338624904968 0.5651404050981086 1.1414526067534134 1.0 20.70344382181461 1.7810070254776522 24.999999999201926 0.8570293415297456 1.2089472285692133 0.48664194416713347 0.14087602728886175 45.777452241739454 26971.521630502037 0.060440660870597164 0.03362733233771296 60.39583993875013 -1.7810070254776522 0.3519178870394677 FLSQIESDR ddPTM_BT-474_Trastuzumab_2h_R1 5 FLSQIESDR 9 0 P19367-4;P19367-2;P19367;P19367-3;Q2TB90 P19367-4;Q2TB90 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 0 ;;;; 154.35 0.00017657 1074820000.0 1122598.0 1585512.0 1470739.0 1512872.0 1547364.0 1534173.0 1478718.0 1371520.0 1439030.0 1376632.0 False True 1116554.057100363 1638284.808457758 1677806.2673074438 1704401.4400817407 1744411.6334550208 1428119.2315647842 1407186.761088677 1473869.7868374456 1084400.3385140835 1288774.167166048 0.8663690548326333 1.2711961879716034 1.3018621183235373 1.3224981408726069 1.3535432955572795 1.108122173728194 1.0918800181904738 1.143621453926574 0.8414199835325901 1.0 20.29756805067019 1.6478959753464846 1.2338260893838386 0.9394155684949622 1.2232736237542006 0.3269924114918835 0.14404383896067 0.5008431897860828 1.4489616267621297 0.12427191218747106 0.045965113855855166 44.45247796444482 -1.6478959753464846 0.28385805525923835 FLSQPFQVAEVFTGHMGK ddPTM_BT-474_Trastuzumab_2h_R1 3 FLSQPFQVAEVFTGHMGK 18 0 P06576 P06576 ATP5B ATP synthase subunit beta, mitochondrial 0 ;; 337.9 3.437099999999999e-75 1586920000.0 2214750.0 2376550.0 2540690.0 2076190.0 2747400.0 4768770.0 2514230.0 2107360.0 3408110.0 2939510.0 False True 2202826.0320818555 2455652.030095186 2898397.067926637 2339035.4411234423 3097265.1048843917 4439116.1543771075 2392607.0896086865 2264621.904157253 2568226.956834277 2751907.955158872 0.8004722788610431 0.8923452637620714 1.0532318359315576 0.8499686323950489 1.1254973477866856 1.613104880944621 0.8694357255384865 0.822927925300653 0.9332532187421978 1.0 21.392000785419196 4.582378600216427 1.3894675577923448 1.030049504707011 0.7371239032229187 0.11256059888749426 0.21504313137271933 2.4863602000638307 5.383813526211677 0.06559708742928222 0.9413912780716696 38227.73794517507 -4.582378600216427 -0.2929256014840924 FLTTYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLTTYDR 7 0 P78356;P78356-2 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ; 127.12 0.0090405 220390000.0 262950.0 295070.0 306310.0 247120.0 205729.0 240490.0 276530.0 236250.0 342720.0 272390.0 False True 261534.3064164913 304891.2265764182 349435.78550575173 278405.3666622157 231927.36869868246 223865.4923525669 263153.1874528149 253880.17465319223 258261.24821271742 255005.8369951884 1.0256012548505942 1.1956245008704294 1.370305047222684 1.091760761019242 0.9094982743593378 0.8778837966630187 1.0319496626180373 0.9955857389177432 1.0127660262835099 1.0 17.96017074468814 3.4716602463550115 7.702513606478227 0.9745551703792099 1.2028213067157485 0.5677888171437089 0.0888541814661805 0.08914194725201716 38.95871301605542 0.02510442595542657 0.0353035437241439 2962.5128743233076 -3.4716602463550115 0.22826613633653858 FLTWILNR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLTWILNR 8 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ; 172.97 0.00065247 272000000.0 228554.0 337620.0 304040.0 266460.0 189760.0 239390.0 264530.0 206321.0 427170.0 250530.0 False True 227323.49065873676 348857.4776044003 346846.18923694495 300193.80867924093 213924.81120436097 222841.5327634456 251733.67329726648 221717.72069680953 321899.67728474096 234540.96091047593 0.9692272504396617 1.4874053395626654 1.4788299147854853 1.2799206053983236 0.9121000032314862 0.9501177615133248 1.0733036665324869 0.9453262229169385 1.3724667795132373 1.0 17.839480375607874 3.3549271270673837 6.098966147064836 1.031911549140853 1.3367019742072623 0.3319905938012795 0.18050456772974294 0.21445404451047823 10.629715085849012 0.04909077754503041 0.06665618690366025 2264.2643409255716 -3.3549271270673837 0.3047904250664093 FLVHNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FLVHNVK 7 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 ; 99.171 0.010725 5548000000.0 8454900.0 8773900.0 8322700.0 7831600.0 7541100.0 8861000.0 9033000.0 8405600.0 11437700.0 8859500.0 False True 8409379.757827707 9065933.957565442 9494463.81779477 8823079.757007964 8501414.385398442 8248459.926550366 8596039.280589005 9032868.55477195 8619032.09232785 8294079.1250004405 1.0139015593038798 1.0930609439495744 1.1447279046538232 1.0637805142722816 1.024997984378162 0.9944997874070713 1.0364067126727041 1.0890743165862276 1.0391789085237828 1.0 22.98365037985491 3.475654211891834 17.417740615142883 1.038043195607029 1.0880533323135038 0.2700833703240567 0.03854504206752573 1.5287857311151938 18121.49921887197 0.011315772058454212 0.015584195826109525 2989.8831241392595 -3.475654211891834 0.050010136706474695 FLVYVANFDEKDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLVYVANFDEKDPR 14 1 P50395;P50395-2;Q5SX87;Q5SX86 P50395;Q5SX86 GDI2 Rab GDP dissociation inhibitor beta 0 ; 103.44 0.0010175000000000002 6811700000.0 7461100.0 7198900.0 6550400.0 6422900.0 6385600.0 7697300.0 8100400.0 7720600.0 10444000.0 7961400.0 False True 7420930.266606141 7438511.034673058 7472639.382902537 7236038.481445232 7198768.309583517 7165203.768495211 7708552.705466964 8296750.37641243 7870216.142430024 7453296.635902544 0.9956574424878659 0.998016233359308 1.002595193502271 0.9708507302110078 0.9658502353048766 0.9613469204996365 1.0342474051461807 1.1131651914197227 1.0559375974007499 1.0 22.829447248362214 2.0389433845547327 5.492492065429334 1.0702532476008566 0.9833106380348483 0.5584744496313598 0.029487859771091664 0.10909994396401552 8.298186472264472 0.01134984069903288 0.0080875179068286 109.38137653582777 -2.0389433845547327 -0.0869426095660083 FLYDDNQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLYDDNQR 8 0 Q02880;Q02880-2;E9PCY5;P11388;P11388-2;P11388-3;P11388-4 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2;DNA topoisomerase 2-alpha 0 ; 118.05 0.0045621 1072250000.0 664560.0 1239730.0 1033500.0 996960.0 974670.0 1091420.0 964030.0 909910.0 1433100.0 1023430.0 False True 660982.0827995575 1280993.6636173897 1179007.8166569625 1123175.0337793885 1098788.4471783026 1015972.7043263272 917396.1859477698 977812.1046293578 1079931.7075561536 958113.8211974954 0.6898784551228279 1.3369952872784405 1.2305508913162149 1.1722772482037591 1.1468245451307502 1.0603883190584986 0.9575022984233388 1.0205594398035533 1.127143439185967 1.0 19.869837528647736 2.6017055990704643 4.182369014121184 1.0231955657807594 1.1368401642944546 0.05421378822624501 0.16305187508598912 0.5767160345493643 16.876347832701093 0.052902137059652854 0.049328350828021186 399.67372580929003 -2.6017055990704643 0.11364459851369513 FLYQLHETEKEDLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLYQLHETEKEDLIR 15 1 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 265.99 1.7533e-25 552750000.0 990450.0 998810.0 925970.0 899830.0 886440.0 1063580.0 1052890.0 976180.0 1386490.0 1115420.0 False True 985117.5272493395 1032054.7870566058 1056338.5273244774 1013748.3857383505 999322.8796584827 990057.217998017 1001957.6882696057 1049027.5085415996 1044808.1175141536 1044232.9406408942 0.9433886721144107 0.9883377040597722 1.0115928029201544 0.9708067484599423 0.9569922962257367 0.9481191211899261 0.9595154962786921 1.0045914735248274 1.0005508128032299 1.0 19.994012144087684 1.6969406038605819 7.046117833213321 1.001763534527413 0.969735024396812 0.3939912280811809 0.01884309388388453 0.14965794801858814 15.921615403389415 0.010338153076192253 0.0053511557636701556 49.76690167879162 -1.6969406038605819 -0.03202851013060093 FLYTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FLYTGR 6 0 U3KQ56;Q9UBQ7;Q9UBQ7-2 U3KQ56 GRHPR Glyoxylate reductase/hydroxypyruvate reductase 0 ; 114.67 0.058367 289270000.0 257360.0 311990.0 259460.0 255920.0 233300.0 289940.0 250490.0 202970.0 299050.0 281340.0 False True 255974.40235538405 322374.3985480621 295989.71273325174 288319.4457599315 263009.3721225624 269897.1302453459 238372.84173527503 218116.65206077628 225353.13456469728 263384.64033270784 0.9718653374473045 1.22396810285079 1.1237926112903058 1.0946706892084748 0.9985752084492421 1.0247261567888373 0.9050369886192381 0.828129733705242 0.8556046938805197 1.0 18.006811689575862 2.6251577206966874 1.202830719664645 0.872385333297185 1.1134786948866295 0.5698554474547682 0.0762574310766669 0.2848578608675251 0.8447091654919845 0.03781058052459838 0.03158602276943919 421.8496767882649 -2.6251577206966874 0.2410933615894445 FMADCPHTIGVEFGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 FMADCPHTIGVEFGTR 16 0 P61106;X6RFL8 P61106 RAB14 Ras-related protein Rab-14 0 148.57 9.1882e-07 298240000.0 175520.0 206430.0 214300.0 206700.0 272800.0 227580.0 175090.0 180320.0 206890.0 202690.0 False True 174575.01982210545 213300.89776042994 244471.5772710085 232868.1988065716 307539.4629877196 211847.93026569558 166620.2277912462 193776.39404640702 155904.73168396676 189754.1506683603 0.9200063303343287 1.1240908143992228 1.288359576904748 1.2272100398666017 1.6207258808542042 1.1164337091943213 0.8780847596975835 1.0211971298855882 0.8216143422150839 1.0 17.533771917828105 2.4603953651079036 8.663073486655838 0.9461484543036002 1.2457734896146337 0.4140560637237084 0.17099106259082286 0.1992938756637982 84.68941542574991 0.06110036342534784 0.05179355432090253 288.6658210693571 -2.4603953651079036 0.29962503531103357 FMEQSRS(ph)PSVSPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 FMEQSRSPSVSPSK 14 1 Q96JG6;Q96JG6-3;H0Y7Q2 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 FMEQS(0.008)RS(0.991)PSVSPSK;FMEQS(0.003)RS(0.995)PS(0.002)VSPSK 180.88 1.0307e-06 484610000.0 550810.0 572990.0 563890.0 654670.0 593620.0 655770.0 675510.0 602390.0 941140.0 755240.0 True False 547844.500160744 592061.6257702307 643280.8105802562 737551.1548751727 669213.9883386006 610438.163416537 642833.0006012033 647343.4006744394 709208.657629893 707039.9366065053 0.7748423699942147 0.8373807406295574 0.9098224545387547 1.043153458084855 0.9465009735525642 0.8633715463745708 0.9091890957200122 0.9155683677239164 1.0030673246461814 1.0 19.431432181291736 4.318436017067847 2.6611834927946503 0.9440882560544928 0.7846663491918086 0.5770887931134349 0.050587738447776816 0.21536365111799097 2.9297139657480176 0.013579451304205006 0.05065133474569697 20817.856811656846 -4.318436017067847 -0.1594219068626842 FMERDPDELR ddPTM_BT-474_Trastuzumab_2h_R1 3 FMERDPDELR 10 1 A0A087WTB8;P15374;Q5TBK7 A0A087WTB8;Q5TBK7 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 0 ;; 187.42 1.1242e-06 1470810000.0 1250520.0 1649450.0 1436560.0 1562410.0 1568740.0 1566060.0 1575700.0 1380600.0 1791640.0 1569950.0 False True 1243787.3392658324 1704350.946136421 1638815.161196639 1760210.9458024916 1768509.7403495451 1457801.9583087077 1499477.3712414561 1483627.382544748 1350114.3287460117 1469754.4468981815 0.8462551971798844 1.1596161180075624 1.1150265030020823 1.197622466472069 1.2032688481275677 0.9918676969376083 1.020223054542208 1.0094389478976196 0.9185985669887495 1.0 20.487143712254024 2.7026280683671735 22.964167295842127 0.9930175117583816 1.1132017981549067 0.2591323688985888 0.09759871713293092 308.5693969301018 197203.0680353785 0.03153195437801037 0.029730415929390495 504.2292885054794 -2.7026280683671735 0.12018428639652512 FMFNIADGGFTELHSLWQNEER ddPTM_BT-474_Trastuzumab_2h_R1 3 FMFNIADGGFTELHSLWQNEER 22 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;; 279.16 1.4165e-45 578684000.0 311609.0 382292.0 355035.0 353915.0 343533.0 398398.0 402093.0 329452.0 402013.0 379800.0 False True 309931.3317670148 395016.35811960563 405020.8419804589 398720.60271227715 387279.8912703825 370857.68398801604 382642.22544557473 354037.3811633589 302942.2828482119 355560.83883686055 0.8716689182669478 1.110966999098706 1.1391041918603744 1.1213850322116583 1.08920850939964 1.0430217377177862 1.0761652680798734 0.9957153389600348 0.852012510261876 1.0 18.439736910170744 1.53617569573788 3.7490053669952035 0.9241907974697223 1.0709980451748977 0.3316594894463729 0.07817514292196007 0.19677023226038268 6.109332404531321 0.04942450715815728 0.01997264535644241 34.36969638927363 -1.53617569573788 0.1468072477051754 FMLQDVLDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FMLQDVLDLR 10 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 167.67 1.2029e-05 395760000.0 612940.0 800600.0 765130.0 743510.0 664680.0 700530.0 726200.0 634280.0 894080.0 711630.0 False True 609639.9991440356 827247.4870270797 872853.6533708196 837638.289766202 749323.0581329818 652104.0099702434 691070.9316465997 681613.1944085791 673745.9640582001 666213.1641429046 0.9150824870420395 1.2417159124907846 1.3101717293349522 1.2573127263911679 1.1247497024424602 0.9788218622326191 1.0373120329071779 1.0231157699885547 1.0113068914286416 1.0 19.345624335888356 2.9383760504499437 4.360990229715118 1.0157938318669537 1.1948330071639601 0.39401627033168896 0.1000521893426853 0.2217351887328065 8.436472780262228 0.0313823210524338 0.03429298520981388 867.712892883322 -2.9383760504499437 0.17903917529700641 FMQDPMEIFVDDETKLTLHGLQQYYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 FMQDPMEIFVDDETKLTLHGLQQYYVK 27 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 168.57 4.1997e-12 22882000.0 31536.0 37875.0 35862.0 38734.0 42699.0 44154.0 48714.0 35672.0 66782.0 42800.0 False True 31366.213679978984 39135.64647907903 40911.05788190805 43637.7204285135 48136.464553198835 41101.73790733605 46357.517714448404 38334.02577874568 50324.470932953096 40068.46735707647 0.7828154094453881 0.9767193272034973 1.0210287685157182 1.0890788519468206 1.2013552733181216 1.0257876234958383 1.1569575971380703 0.9567130541112531 1.2559619634182317 1.0 15.290179706422395 4.8300806321931935 1.237565741671276 1.0912152321065558 0.5981034622972933 0.5465968747921313 0.0871643234793002 1.302903487045388 1.4827929241735482 0.02336311533579393 0.8644851312248444 67620.8510291178 -4.8300806321931935 -0.4931117698092625 FMQDPMEVFVDDETKLTLHGLQQYYVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FMQDPMEVFVDDETKLTLHGLQQYYVK 27 1 O00148;O00148-2 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 ; 221.45 1.5352e-34 128045000.0 272703.0 285780.0 278551.0 291020.0 304200.0 326020.0 331000.0 292708.0 492880.0 350090.0 False True 271234.7973481517 295292.0145423422 317768.5595913046 327863.10216104693 342938.0668653384 303483.0047685303 314988.2654572082 314551.3573011069 371416.32825362985 327746.95647287124 0.8275738095850258 0.9009756115516654 0.9695545704254539 1.0003543760998594 1.0463501188720408 0.9259674232662193 0.9610715194643795 0.9597384539775076 1.1332411206826059 1.0 18.322222857776648 4.450148114564046 1.7535103917649366 0.9959218712199935 0.8142191621945657 0.5283992495296415 0.05381561274948357 0.43286074169087385 2.011816471184779 0.014390566652851428 0.1091589814331666 28193.44294506396 -4.450148114564046 -0.18170270902542784 FMSVQRPGPYDRPGTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FMSVQRPGPYDRPGTAR 17 2 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ; 195.38 1.1944e-11 8735100000.0 1586210.0 2081190.0 2081060.0 1942190.0 1702280.0 1958920.0 1912080.0 1659580.0 2027550.0 1875580.0 False True 1577670.0216044981 2150461.1510440772 2374055.159102212 2188071.0548627754 1919055.2677959513 1823504.4712016734 1819585.3855450696 1783426.286776487 1527887.4702780538 1755878.878635175 0.8985073177888007 1.2247206667897312 1.3520608898419797 1.2461400848807627 1.092931460789375 1.0385138140160686 1.0362818345189122 1.0156886721951597 0.8701553899125796 1.0 20.743761899835768 2.812077442076284 1.9709973589788605 0.990183016347239 1.193500586750189 0.36463222835373743 0.1165541518031765 0.3692791367036649 2.835727095273703 0.043404756506403304 0.045013167034494234 648.7501063882488 -2.812077442076284 0.20331757040295007 FNADEFEDMVAEK ddPTM_BT-474_Trastuzumab_2h_R1 8 FNADEFEDMVAEK 13 0 P27635;X1WI28;A0A087WV22;F8W7C6 P27635;F8W7C6 RPL10 60S ribosomal protein L10 0 ;;;;;;; 244.0 1.1978e-16 1264450000.0 1549477.0 1325671.0 1235780.0 1163188.0 1165711.0 1517217.0 1527601.0 1402397.0 1965483.0 1522675.0 False True 1541134.7879950793 1369795.1578499563 1409767.082407684 1310447.4815356478 1314157.3861395805 1412335.3599346525 1453705.1036274817 1507050.9853676723 1481116.0507728641 1425496.5778723469 1.0811213523187342 0.9609249009173149 0.9889656027879491 0.9192919168501843 0.9218944517573323 0.9907672749679004 1.0197885608376822 1.0572112264324416 1.0390176123632182 1.0 20.44303314518894 2.242409154732176 3.1635147582109138 1.0378686962183366 0.9705501687907331 0.24572843780323395 0.04434541639163877 0.30183890868669006 6.293760421925953 0.018065546968551137 0.013415685690451047 174.7467690711362 -2.242409154732176 -0.06731852742760347 FNADEFEDMVAEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 FNADEFEDMVAEKR 14 1 P27635;X1WI28;A0A087WV22;F8W7C6 P27635;F8W7C6 RPL10 60S ribosomal protein L10 0 ;;; 207.55 1.4894e-08 2874920000.0 2232208.0 2532635.0 2325728.0 2404887.0 2241111.0 2815540.0 2860288.0 2571694.0 4074670.0 3020697.0 False True 2220190.0401496254 2616932.224964811 2653170.2868098374 2709345.447621378 2526503.201744399 2620908.3468682524 2721924.942078751 2763606.8650775324 3070522.176280673 2827913.5313111898 0.7850982767214288 0.9253932965027558 0.9382077130129467 0.9580722386391933 0.8934160022116946 0.9267993231932529 0.9625205692964396 0.9772600309303513 1.0857906871208314 1.0 21.431306577075546 7.999999999999951 0.22376179259095957 1.0212066431650002 2.602951074159754e-10 0.6117801783829931 0.04551257166822904 37.434002577614784 0.4834614660549025 0.07075356488434532 13.889847668687812 99999999.99998875 -7.999999999999951 -1.021206642904705 FNAHHGDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 FNAHHGDTK 9 0 P53602 P53602 MVD Diphosphomevalonate decarboxylase 0 ;;; 151.22 4.822100000000001e-05 1118910000.0 1588182.0 1572666.0 1361040.0 1294162.0 1391848.0 1588948.0 1727917.0 1066818.0 2313230.0 1550219.0 False True 1579631.4045756066 1625011.2371133287 1552662.6016282444 1458002.7765065818 1569091.5926705701 1479107.7647412654 1644331.0534260506 1146429.3763520382 1743165.4621939333 1451282.6962107415 1.0884381166398387 1.119706891948886 1.069855380817399 1.0046304419624008 1.081175705303608 1.0191727418808028 1.1330191269553154 0.7899421521012641 1.2011205444296205 1.0 20.46889713951905 3.517142336021461 0.5440651992267508 0.9946549475630718 1.1198413733750876 0.03471388796556052 0.10330921070366052 3.1421491252596825 1.6697620171413232 0.07317141374766585 0.21753823091310961 3289.594266365359 -3.517142336021461 0.12518642581201578 FNALIGPEAEQEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FNALIGPEAEQEKR 14 1 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YET1 E9PP16 PPFIBP2 Liprin-beta-2 0 67.102 0.085819 206500000.0 497150.0 373030.0 303540.0 334040.0 296790.0 477970.0 364310.0 402190.0 666970.0 496880.0 False True 494473.39963855717 385446.07804860355 346275.7935830228 376329.4297501068 334584.4472878499 444929.05892035563 346686.9335006511 432203.4600794385 502604.1804401144 465168.69299962936 1.0629980200300178 0.8286156911443536 0.7444090687833514 0.8090171058661652 0.7192755065485813 0.956489689904196 0.745292920005103 0.9291327352500546 1.0804772290221922 1.0 18.82739447758059 1.4697823310899956 4.474679309497715 1.035171420640467 0.8329091953163827 0.39202815865290674 0.10040403244918956 0.18102372609446873 7.3905201057685 0.06433614802499243 0.025112815826858377 29.497304477116007 -1.4697823310899956 -0.20226222532408422 FNDEHIPESPYLVPVIAPSDDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 FNDEHIPESPYLVPVIAPSDDAR 23 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 ;;; 168.65 9.402e-12 3259940000.0 3239110.0 3573320.0 3229320.0 3229000.0 3364980.0 4094620.0 4025000.0 3300960.0 4386380.0 4026670.0 False True 3221670.9916589498 3692255.7960824454 3683980.186247371 3637791.0689231693 3793490.257200946 3811568.5570987104 3830295.3730068365 3547294.397135239 3305415.423480681 3769684.4731943673 0.8546261668762319 0.9794601702974068 0.977264864591075 0.9650120838470511 1.0063150601000848 1.011110766485146 1.0160785074303869 0.9410056524251541 0.8768414033017803 1.0 21.846012342683373 4.73983474275997 24.299002533098438 0.9751647139944007 0.8546261090058114 0.4558034014003163 0.03938711146258274 69.90143273467675 1332873.7190484602 0.009765719821411655 0.060346568448434855 54933.18029724383 -4.73983474275997 -0.12053860498858937 FNDFDHR ddPTM_BT-474_Trastuzumab_2h_R1 5 FNDFDHR 7 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 ;;;; 154.71 0.0016604 2427310000.0 3356250.0 4112670.0 3423840.0 3715500.0 3571540.0 3918060.0 3237560.0 3371390.0 4542810.0 3803760.0 False True 3338180.322914431 4249557.734788488 3905886.9114492233 4185881.9190412033 4026354.448823902 3647213.7343211733 3080946.854119756 3622980.241371537 3423295.346035288 3561000.780237226 0.9374275741360688 1.1933605177433833 1.0968509002093008 1.1754790794407939 1.1306805859659697 1.024210315977017 0.8651912887012931 1.0174050681140774 0.9613295692137523 1.0 21.763851321128563 2.5504428595374957 4.473944589510933 0.9625771987104348 1.1136556746196085 0.45581188379250515 0.07485173516076482 0.1861615045123789 7.012475873310806 0.02397364638998475 0.022083995461941487 355.1753847065902 -2.5504428595374957 0.15107847590917367 FNDIHVPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FNDIHVPVR 9 0 Q29RF7;Q29RF7-3 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 0 83.86200000000002 0.015882 191370000.0 157720.0 174840.0 169650.0 177530.0 162410.0 185800.0 182350.0 163140.0 206950.0 171810.0 False True 156870.85304433922 180659.44370698824 193535.24537576575 200005.27979743888 183091.9508205114 172956.0833261546 173529.033855353 175314.3352081346 155949.9454879257 160844.93870605872 0.9752924419401093 1.123190105702612 1.2032411273409602 1.2434664180695483 1.1383134109995758 1.075297020332289 1.0788591500070401 1.089958668382587 0.9695670049831128 1.0 17.295311013980136 1.6161793128864765 1.0072704506157264 0.9869935170848291 1.1387124114463247 0.357437468770626 0.06984171817812844 0.5733545367042067 1.1125598260111191 0.06593573564356119 0.025331076559471755 41.321807756748925 -1.6161793128864765 0.15171889436149566 FNDILGR ddPTM_BT-474_Trastuzumab_2h_R1 4 FNDILGR 7 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2;A0A087WY74 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ;;; 142.64 0.005758600000000001 630190000.0 1490280.0 1612690.0 1453190.0 1516300.0 1467620.0 1650700.0 1522260.0 1421640.0 1986100.0 1588240.0 False True 1482256.498065672 1666367.4117583088 1657786.5206460867 1708263.4245302593 1654512.7077347399 1536590.9943298355 1448622.468202081 1527729.995741645 1496652.2673765097 1486877.1634393272 0.9968923691295608 1.120716258701424 1.1149451759763567 1.1488934436109295 1.1127433714212487 1.0334350625007342 0.9742717850688093 1.027475593348828 1.0065742511738975 1.0 20.503854035129468 2.6143918464142915 4.019853299884234 1.0056149105200336 1.103562357048749 0.574175060771682 0.03943967471564014 0.17004913033877048 4.717349451791681 0.013302592424671718 0.012433630547949508 411.5208523367965 -2.6143918464142915 0.09794744652871534 FNDPHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNDPHVK 7 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 63.565 0.078666 861460000.0 2035680.0 2005400.0 1819500.0 1811680.0 1820380.0 2180300.0 2148700.0 2000490.0 2634600.0 2136300.0 False True 2024720.1250653118 2072148.5267100993 2075669.7846224888 2041038.5022442671 2052194.6027624083 2029580.9928741388 2044759.1721688877 2149776.7220823877 1985338.1318313044 1999959.5050215505 1.0123805606971499 1.0360952416822915 1.0378559062875239 1.0205399144930558 1.0261180776959256 1.0148110438127442 1.0224002871232407 1.074910125272373 0.9926891653788318 1.0 20.93153935807615 FNDS(ph)EGDDT(ph)EETEDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 2 FNDS(1)EGDDT(0.999)EET(0.001)EDYR;FNDS(1)EGDDT(1)EETEDYR 306.28 7.2841e-46 635790000.0 899730.0 929110.0 779190.0 818170.0 873910.0 969740.0 850870.0 885130.0 1225550.0 916840.0 True False 894885.9536494004 960034.8646911455 888893.1791591096 921750.2381111392 985197.2584296124 902704.1563224175 809710.1674609501 951182.8951990686 923529.6240286404 858326.4862537853 1.0425938940264805 1.1184961434445209 1.0356119651378048 1.0738923391892174 1.14781178748143 1.0517025523263543 0.943359176756826 1.1081830870098863 1.075965426698456 1.0 19.711166992214864 2.493104594082784 24.904358308484827 1.0387326364506313 1.08413665999089 0.18229703765066385 0.05121176542586592 1348.0449427302503 2100452.1774770496 0.016994524781701492 0.01560924111228001 311.24658430866356 -2.493104594082784 0.04540402354025863 FNDS(ph)EGDDTEETEDYR ddPTM_BT-474_Trastuzumab_2h_R1 11 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(0.999)EGDDT(0.001)EETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(0.878)EGDDT(0.122)EETEDYR;FNDS(0.891)EGDDT(0.109)EETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR 445.83 4.5848999999999964e-182 30054571000.0 2917440.9 2654575.9 2366821.9 2673965.4 2689992.1 2743588.7 2696603.6 2477596.8 3256871.3 2623610.0 True False 2901733.7223525587 2742931.8541064844 2700049.850735255 3012489.1454721494 3032546.6491026683 2553930.870882111 2566158.5818418823 2662487.654197627 2454259.0079545267 2456168.9636144713 1.1814063956261378 1.11675210245716 1.0992932044715245 1.2264991497323554 1.2346653239360235 1.0398025985654402 1.0447809657465712 1.084000202608024 0.9992223842544066 1.0 21.22797837864142 2.718550728153065 24.431097842680206 1.0433661171640598 1.167688497385772 0.6929136889804549 0.04571687133482161 410.15744803260634 500781.3801738606 0.015849070478514277 0.014963055758809199 523.0590589924935 -2.718550728153065 0.12432238022171216 FNDSEGDDT(ph)EETEDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 FNDS(0.346)EGDDT(0.654)EETEDYR 399.25 4.012299999999999e-121 366590000.0 162470.0 192970.0 139600.0 176320.0 161650.0 162400.0 168890.0 161140.0 228130.0 181850.0 True False 161595.279572114 199392.88979717158 159254.46657504782 198642.09392150308 182235.16932538437 151173.67024847976 160720.14547754626 173165.0850523401 171910.4182853851 170244.17731038207 0.9491971010409375 1.171217089167442 0.9354473620833547 1.1668069772474339 1.0704340800633716 0.887981443106076 0.944056636865342 1.017157166771306 1.0097873595521871 1.0 17.377245930476864 2.787946123744817 24.914522258535797 0.9742180299647791 1.0640433357813006 0.22601456856512092 0.07995881726426335 519.9160677130579 262291.646723895 0.023219778031974923 0.024628254514766218 613.6858698492318 -2.787946123744817 0.08982530581652148 FNEEHIPDSPFVVPVAS(ph)PSGDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 FNEEHIPDSPFVVPVASPSGDAR 23 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 1 FNEEHIPDSPFVVPVAS(0.911)PS(0.089)GDAR;FNEEHIPDSPFVVPVAS(0.975)PS(0.025)GDAR;FNEEHIPDSPFVVPVAS(0.954)PS(0.046)GDAR;FNEEHIPDSPFVVPVAS(0.897)PS(0.103)GDAR 149.07 6.385200000000001e-08 727530000.0 510390.0 528960.0 492640.0 528320.0 530710.0 593950.0 574550.0 502070.0 679860.0 596390.0 True False 507642.1169496599 546566.1138369282 561999.4298963579 595205.2578301298 598292.7727353838 552891.6345079093 546756.8215058577 539537.0128598019 512317.61265726516 558327.8796048332 0.9092186428321525 0.978933945092927 1.0065759752031787 1.0660496807922206 1.0715796122501289 0.9902633465110653 0.9792755144035346 0.9663443875338432 0.9175927467922027 1.0 19.090753072044194 0.029978501166985264 7.158408305429339 0.9999999782951081 0.9904355110507947 0.0022546423138268823 0.05030096815416154 3518207.3327747453 491478.9063308985 0.05194255895157007 0.012597920994410735 1.0714662632455938 -0.029978501166985264 -0.009564467244313368 FNEEHIPDSPFVVPVASPSGDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 FNEEHIPDSPFVVPVASPSGDAR 23 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 0 ;;;;; 168.79 9.2452e-12 8686510000.0 1714670.0 1937660.0 1736160.0 1817750.0 1704080.0 2016500.0 1941110.0 1683733.0 2259170.0 1978320.0 False True 1705438.4072377477 2002153.841759793 1980596.237026755 2047876.963621896 1921084.4871265138 1877104.101330414 1847211.0935397001 1809381.706282935 1702427.8248270426 1852061.9238750346 0.9208322817141507 1.0810404425197209 1.0694006563683305 1.1057281277815816 1.0372679565200849 1.0135212419911879 0.9973808487325385 0.976955296665891 0.9192067516107046 1.0 20.820700905381237 2.2060349402538773 1.4713228036838557 0.962429959201094 1.0492254689054767 0.3081870224141465 0.04990169524710854 0.4652054727104638 1.9618237871209376 0.02935718298879648 0.016877094516854048 160.70705413099626 -2.2060349402538773 0.08679550970438277 FNEGER ddPTM_BT-474_Trastuzumab_2h_R1 4 FNEGER 6 0 P35579 P35579 MYH9 Myosin-9 0 ;;; 127.95 0.039173 4260780000.0 3770890.0 4287800.0 3953730.0 4047510.0 3707450.0 3939440.0 4297930.0 3690600.0 4709390.0 4162760.0 False True 3750587.9472252624 4430516.830970162 4510380.817562778 4559924.350999453 4179571.7817222206 3667115.7852442795 4090022.706212984 3966011.3124870686 3548823.9370929287 3897089.0928818597 0.9624075451792504 1.1368785073614618 1.1573717485189425 1.170084707411047 1.0724855609168196 0.9409884397927589 1.0495071086990346 1.0176855642666978 0.9106345409385054 1.0 21.89396548322517 2.948845298974555 6.1552784086812276 0.9937486934220878 1.1136564485063432 0.44695209035470684 0.06476950158626785 0.20540034449547226 18.29014904831981 0.01991522141088161 0.02147820473589048 888.8844299121849 -2.948845298974555 0.11990775508425533 FNENNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNENNRR 7 1 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 ; 87.75399999999998 0.030641 214350000.0 117639.0 138166.0 129746.0 108224.0 113727.0 112180.0 120916.0 100592.0 139053.0 120260.0 False True 117005.64469492158 142764.77178688944 148013.10902755128 121925.14730354318 128209.45933725942 104425.26064331556 115066.8311360235 108098.68583582611 104785.25136473784 112584.90384023402 1.0392658403027186 1.2680631853581612 1.3146798902772294 1.0829617750223746 1.1387802002229157 0.9275245355407722 1.0220449386297075 0.9601525795076916 0.9307220399054171 1.0 16.780653868329953 3.0330422932681307 1.6656035584058937 0.968066403393144 1.2040797182161362 0.6039520790545087 0.08056306787071206 0.23294055716206277 1.3216510204494079 0.027887738145210398 0.033920427271764385 1079.051799330539 -3.0330422932681307 0.23601331482299226 FNFESFPES(ph)PGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNFESFPESPGEK 13 0 H0YBR0;Q96Q05-3;Q96Q05;Q96Q05-2 H0YBR0 TRAPPC9 Trafficking protein particle complex subunit 9 1 FNFESFPES(1)PGEK 214.82 2.9096e-07 0.0 92498.0 74535.0 66210.0 58437.0 65733.0 81978.0 78451.0 76537.0 101770.0 79731.0 True False 92000.00104549393 77015.852417641 75531.79249236328 65835.11820831937 74103.7079199845 76311.05381545481 74656.02541807684 82248.57958701107 76690.14714813326 74642.49931885664 1.2325418077506995 1.0317962704952564 1.0119140326438933 0.8820058118242525 0.9927817074215248 1.0223539473064864 1.0001812117673394 1.101900128446435 1.0274327340049199 1.0 16.187709673543946 4.742966154452955 3.615724593059923 1.0093519911786386 1.2588893828618128 0.6408959644889691 0.050729506104261544 0.2047733850656276 4.846645145158009 0.013880749566167373 0.13912222415583783 55330.69870758562 -4.742966154452955 0.24953739168317424 FNFGEEEFKFPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNFGEEEFKFPPK 13 1 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 107.17 0.00078375 0.0 95910.0 83523.0 71324.0 72241.0 69394.0 87903.0 88124.0 90407.0 132220.0 86314.0 False True 95393.63121660285 86303.01256428027 81365.79924067837 81386.70319296348 78230.91456953745 81826.47251140457 83861.10545362836 97153.62941744404 99636.15265722897 80805.3666228668 1.1805358381928035 1.0680356537093876 1.0069355865981924 1.0071942816967825 0.9681400857279098 1.0126366098096362 1.0378160381973545 1.2023165474995927 1.2330388044923903 1.0 16.302163491129093 1.759923317984941 13.907738149974694 1.163044165666604 1.0348731738809962 0.2620409097676716 0.07864237005319914 0.4208531569171311 274.57373119198144 0.03625062341026594 0.020004404577027658 57.533834268094346 -1.759923317984941 -0.12817099178560776 FNFLAPELPAVSEFSTSETMGHSADR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNFLAPELPAVSEFSTSETMGHSADR 26 0 P55084-2;P55084;F5GZQ3 P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase 0 ; 211.72 9.536499999999999e-26 624820000.0 808070.0 965340.0 1025750.0 891900.0 1294320.0 1911410.0 1012660.0 841870.0 1291720.0 1236400.0 False True 803719.4409050179 997470.7583396481 1170166.6840211703 1004814.448551434 1459143.9799643173 1779278.7256751612 963673.7670631292 904694.6143292403 973392.914161215 1157491.8934647045 0.6943629112591498 0.8617518308088816 1.010950219719057 0.8680963160301164 1.2606083793785214 1.5371846107269664 0.8325533617160616 0.7815990932093964 0.840950091881483 1.0 20.14257065887947 4.617633506852172 1.6198647584565855 1.012645180806265 0.6204867230656633 0.1810862477858628 0.21753044563793097 1.6175769517532597 4.927712824620164 0.06562592522298175 0.927342779240015 41460.40182388647 -4.617633506852172 -0.39215845774060176 FNFLNPNDPYHAYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNFLNPNDPYHAYYR 15 0 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 ; 200.63 6.8193e-09 2834300000.0 1490890.0 1833820.0 1712570.0 1715950.0 1480070.0 1545820.0 1625470.0 1491020.0 1983780.0 1608720.0 False True 1482863.2138934515 1894857.5901324006 1953684.9700747093 1933189.0940596834 1668548.1414378092 1438961.1018688732 1546839.8062015928 1602287.4836461493 1494904.0002901047 1506050.112305517 0.9846041654108241 1.2581637056098238 1.2972244111345912 1.2836153845507081 1.1078968274724499 0.9554536665888617 1.0270838888844365 1.0639005107162791 0.9925991094689741 1.0 20.5223383443618 3.015083268381518 5.368361885027098 1.0183679784092023 1.2152134276791053 0.5395313535901667 0.0858255866712178 0.1358782364383286 12.05209219739817 0.025905751086333362 0.030150093209710547 1035.340656137848 -3.015083268381518 0.196845449269903 FNGEDIDTIS(ph)PTLGFNIK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNGEDIDTISPTLGFNIK 18 0 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 1 FNGEDIDTIS(0.999)PTLGFNIK 263.22 7.3024e-31 109940000.0 346110.0 294760.0 278330.0 276880.0 257440.0 367120.0 349440.0 344720.0 440140.0 353630.0 True False 344246.5822164363 304570.9084138174 317516.44471227133 311932.97961085424 290223.45803357265 341741.8585075234 332536.2522095674 370444.75685269124 331673.394573837 331061.030642125 1.039828159625845 0.9199841727764593 0.9590873443981534 0.9422219794514322 0.8766463919678378 1.0322624135032803 1.004456041125049 1.1189621325535588 1.0018497010370693 1.0 18.336737674818 2.5878627855955654 7.377332400110192 1.0446197332700073 0.9464626379718462 0.39904692656446084 0.05044058428657451 0.23495788762408965 13.975985834654658 0.01623327337042906 0.015271483020075673 387.13531103091265 -2.5878627855955654 -0.09815709529816119 FNGGHS(ph)PTHSPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 FNGGHS(0.752)PT(0.246)HS(0.002)PEK;FNGGHS(0.801)PT(0.199)HSPEK 151.39 2.8798e-05 2373700000.0 1659140.0 1592790.0 1604920.0 1434370.0 1318310.0 2050890.0 1841400.0 756290.0 2359890.0 1566870.0 True False 1650207.3745877838 1645805.0522881108 1830878.7857852832 1615961.09493073 1486188.9642644462 1909116.8015757657 1752324.4471688913 812728.2001628047 1778326.7304058971 1466871.015135102 1.124984649339326 1.1219834841010399 1.2481525416307004 1.1016381660400432 1.0131694940659557 1.3014892119876893 1.1946002266651226 0.5540556680015596 1.2123265863577715 1.0 20.48431058688889 FNGGHSPT(ph)HSPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 FNGGHS(0.116)PT(0.884)HSPEK;FNGGHS(0.09)PT(0.91)HS(0.001)PEK 142.91 7.5717e-05 450100000.0 617390.0 573240.0 572990.0 456610.0 504810.0 716690.0 613870.0 299590.0 842770.0 551500.0 True False 614066.0408384776 592319.9468691022 653662.0114816382 514416.7791827219 569094.561256711 667146.9072067919 584174.7628888704 321946.92708719516 635080.6260394258 516302.7978370957 1.1893525338443511 1.1472336569750519 1.266043907218729 0.9963470686924907 1.102249617164136 1.2921620994532954 1.1314576743262 0.6235622360287425 1.2300545894771755 1.0 18.977857890499994 1.965536717708811 24.977772544889376 0.9014118068069567 1.1631525574722987 0.2517749435294092 0.15957107368673162 630.0154147871024 456612.18769428774 0.06301489655710754 0.04069964178276337 92.37122809726357 -1.965536717708811 0.2617407506653421 FNGIVEDFNYGTLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNGIVEDFNYGTLLR 15 0 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 0 ; 158.81 4.1903e-06 206036000.0 224920.0 239008.0 246210.0 209986.0 232740.0 265370.0 276150.0 273110.0 364400.0 265740.0 False True 223709.05571096114 246963.23679661294 280874.22790431615 236570.20606965054 262378.0594419427 247025.59651378702 262791.5695045561 293490.8550244799 274598.50270983356 248780.24568853993 0.899223550052416 0.9926963296989352 1.129005348181689 0.9509203812179857 1.0546579320064928 0.9929469915511313 1.0563200819150151 1.179719290863292 1.1037793694183289 1.0 17.92451240774036 1.9888231684254272 7.205371248380691 1.1155738633725503 1.0095793600672038 0.2367616166251928 0.07077596087973978 0.17291715137627472 51.758998782234016 0.027870950710362982 0.018738736724505507 97.4592732242137 -1.9888231684254272 -0.10599450330534643 FNGS(ph)TEALDKLDADAVSPT(ph)VSQLSAVFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNGSTEALDKLDADAVSPTVSQLSAVFEK 29 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 2 FNGS(0.996)T(0.004)EALDKLDADAVS(0.172)PT(0.662)VS(0.164)QLS(0.002)AVFEK 177.69 3.0031999999999996e-17 33973000.0 136060.0 63072.0 57798.0 70136.0 53598.0 91726.0 61868.0 78586.0 134730.0 84004.0 True False 135327.46807768717 65171.313392170865 65935.45601077809 79015.21040879398 60423.387599764654 85385.1975197786 58875.20848128867 84450.48637162219 101527.59678950578 78642.7928005572 1.7207866513704018 0.8287003941664329 0.8384170203364257 1.0047355592925247 0.7683270831060381 1.0857345534042837 0.748640865674744 1.0738490249932202 1.2909968373959684 1.0 16.263026935815564 4.744284994242711 24.928708325973815 0.9536177044435766 1.7207869952721704 0.6706177085481129 0.1599134630785765 349.7251712028155 1522948.76953452 0.03726936486102735 0.33222493283819354 55498.979082676495 -4.744284994242711 0.7671692908285938 FNGS(ph)TEALDKLDADAVSPTVSQLSAVFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 FNGSTEALDKLDADAVSPTVSQLSAVFEK 29 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 FNGS(0.952)T(0.048)EALDKLDADAVSPTVSQLSAVFEK;FNGS(0.965)T(0.035)EALDKLDADAVSPTVSQLSAVFEK;FNGS(0.865)T(0.135)EALDKLDADAVSPTVSQLSAVFEK;FNGS(0.922)T(0.078)EALDKLDADAVSPTVSQLSAVFEK 205.95 1.2438e-25 3172621000.0 455838.0 191110.0 171059.0 234610.0 138218.0 245723.0 200135.0 251052.0 434045.0 287168.0 True False 453383.8188563624 197470.98082156535 195142.62032851783 264311.60194489505 155819.2430177297 228736.74737972408 190453.70546005506 269786.77505622525 327080.425655021 268840.69238310563 1.6864404522894085 0.7345278687951138 0.7258671244992706 0.9831532555653573 0.5795969413576827 0.8508263587335496 0.7084258851284801 1.0035191200585492 1.2166328793295997 1.0 18.036391998922866 -0.36536408578352564 7.261825061948651 0.999945374340994 0.9142327799581703 0.0 0.3044020477446836 0.0 0.0 0.2791864045528485 0.06580486662480334 0.43115746936906646 0.36536408578352564 -0.08571259438282364 FNGST(ph)EALDKLDADAVSPTVSQLSAVFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNGSTEALDKLDADAVSPTVSQLSAVFEK 29 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 FNGS(0.371)T(0.629)EALDKLDADAVSPTVSQLSAVFEK 329.79 6.763199999999997e-105 3313500000.0 1261700.0 487210.0 473190.0 508060.0 355600.0 616060.0 503800.0 674230.0 1213900.0 737150.0 True False 1254907.147388047 503426.4903253356 539811.0389587882 572380.3439074352 400883.5521936703 573473.2222492507 479429.2692971036 724544.4662705685 914750.6104266398 690104.455894133 1.8184307269283289 0.7294931745848122 0.782216422960757 0.8294111695972624 0.5809027151900737 0.8309948115118759 0.6947198575553778 1.0499055035542604 1.3255248573079337 1.0 19.396455222697 1.5233792435906306 5.837286220859866 1.1711608751691955 0.8673465220284216 0.09361738077732473 0.33151633010916076 0.2806512061616585 20.510869128976392 0.18334419830022836 0.08232868648350805 33.37177014208121 -1.5233792435906306 -0.303814353140774 FNGSTEALDKLDADAVS(ph)PTVSQLSAVFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNGSTEALDKLDADAVSPTVSQLSAVFEK 29 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 FNGSTEALDKLDADAVS(0.999)PT(0.001)VSQLSAVFEK;FNGSTEALDKLDADAVS(0.996)PT(0.004)VSQLSAVFEK 232.4 4.724999999999999e-36 517630000.0 580090.0 636560.0 606830.0 537750.0 576030.0 919380.0 731380.0 648760.0 1039600.0 685230.0 True False 576966.859894058 657747.5147913542 692266.3893390853 605829.0948632506 649384.0061026994 855825.4245877286 696000.3552570784 697173.7655365281 783404.5099262993 641498.0347450817 0.8994054987609321 1.0253305219442017 1.0791403119639766 0.9443974292204883 1.0122930561443597 1.3341045151101925 1.084961009325079 1.0867901813815701 1.2212110832695044 1.0 19.29108532000451 2.9656356106113946 24.995032865189458 1.1436007634442926 0.9941238561830538 0.39816669961744444 0.09447127707110126 641.9574944666678 466929.8402340638 0.02803332378164343 0.02974911388158291 923.9226428208203 -2.9656356106113946 -0.14947690726123886 FNHDGEEEEEDDDYGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNHDGEEEEEDDDYGSR 17 0 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 0 ; 205.06 8.2222e-12 1338720000.0 433950.0 464310.0 439470.0 462680.0 458690.0 432130.0 453900.0 256020.0 519600.0 381070.0 False True 431613.6614163773 479764.2776686783 501343.5560582828 521255.24056035094 517101.4526313683 402257.8702246033 431943.12293361506 275125.5124432178 391551.542283286 356749.7863495587 1.209849810515272 1.3448200840647029 1.4053086371495258 1.4611227827046342 1.4494793617751187 1.1275630304945827 1.2107733191755263 0.7712002164274264 1.0975522824830148 1.0 18.44455304013638 2.2620788448563958 1.756551999527373 0.9467772541482055 1.373512413421597 0.6620145940521868 0.12094229125075288 0.19412339512393592 1.2024337889717398 0.061111938549069954 0.03924099234976234 182.84321323645068 -2.2620788448563958 0.42673515927339156 FNHPEIVQLVSELEAER ddPTM_BT-474_Trastuzumab_2h_R1 4 FNHPEIVQLVSELEAER 17 0 Q7Z4H3-2;Q7Z4H3 Q7Z4H3-2 HDDC2 HD domain-containing protein 2 0 ;;; 197.38 1.5147e-11 439016000.0 463746.0 559234.0 513989.0 531009.0 510372.0 555762.0 526931.0 440766.0 595605.0 539964.0 False True 461249.2430630242 577847.7656259076 586354.1835275237 598234.6849544211 575364.8489881549 517343.48106302647 501441.33445810265 473658.1970843978 448826.12844810786 505503.0352335614 0.9124559318420505 1.1431143343361334 1.159941964060821 1.183444298564922 1.138202560390789 1.0234230954201775 0.991965031874473 0.9370036657951022 0.887880185013594 1.0 18.947360229083916 2.363690690332048 1.976512743850835 0.9409882357464847 1.1157265525225486 0.4751294884024899 0.07577170062058308 0.27359423151792944 2.185732497979696 0.03420062043373919 0.025145057192917212 231.04186965323095 -2.363690690332048 0.17473831677606388 FNHSVEDLLQEGEEADDDDIYNVLSTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNHSVEDLLQEGEEADDDDIYNVLSTLK 28 0 Q8WVM7;Q68DW7;Q8WVM7-2 Q8WVM7 STAG1;DKFZp781D1416 Cohesin subunit SA-1 0 ; 221.69 2.3175999999999996e-34 120716000.0 62460.0 55573.0 54141.0 51678.0 52769.0 63459.0 63864.0 48504.0 76284.0 65284.0 False True 62123.722299958405 57422.71371041211 61763.58219799185 58220.42950133526 59488.81936363261 59072.2286964179 60774.654335828156 52123.61477832141 57484.83035322984 61117.51922755565 1.0164634148296565 0.9395458853068485 1.0105708310579615 0.9525980477801494 0.9733513420618566 0.9665351186208553 0.9943900718474694 0.8528424490570747 0.9405622328877518 1.0 15.899298364828573 1.771711142975657 24.999999999996604 0.9156700912468055 0.9770371579318335 0.1954647356706707 0.04096983481211269 34.863646944129506 26304.60508165517 0.017408510108673746 0.009657691857466863 59.116830677553466 -1.771711142975657 0.061367066685028004 FNHWELK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNHWELK 7 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 126.67 0.0039297 4872800000.0 9853000.0 9695200.0 8738700.0 8515300.0 8790000.0 10268700.0 10107300.0 8927700.0 13232800.0 9891500.0 False True 9799952.542771218 10017898.871127833 9969033.001857946 9593336.106906617 9909354.397588182 9558848.938919714 9618371.285364456 9593930.307942016 9971753.750435483 9260216.0014608 1.0582855239257134 1.0818212954803115 1.07654432685861 1.0359732543380487 1.0700997035085338 1.0322490250132184 1.0386767742617622 1.0360374214196053 1.0768381373460876 1.0 23.1426144151425 1.9921284081732322 0.007334831280651541 2.091437458197424e-08 2.091698849169738 0.4518336729273592 0.018496065082825374 2011.4467026043123 11.271138388857693 1594.675969014473 1618.2606990667816 98.20382600832096 -1.9921284081732322 2.0916988282553635 FNLLAHLADDLGHVVPNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FNLLAHLADDLGHVVPNSR 19 0 Q8N5N7;Q8N5N7-2 Q8N5N7 MRPL50 39S ribosomal protein L50, mitochondrial 0 ; 117.48 5.6694e-05 109329000.0 74540.0 110291.0 119638.0 117442.0 123246.0 146440.0 124451.0 81938.0 119552.0 128132.0 False True 74138.6849221726 113961.96926268261 136481.99048786217 132310.14515840047 138940.64756372615 136316.94748268076 118430.82968101204 88052.6296327334 90090.01151472564 119954.50606067582 0.6180566896309131 0.9500432539402727 1.1377812720001228 1.1030027091393706 1.1582778515502092 1.1364053920052692 0.9872978812576405 0.7340502039014216 0.7510348253958545 1.0 16.872127827560345 1.8619250532862825 5.562568256224415 0.8056361975043058 1.0320765577421775 0.2052993438797749 0.16353377779831732 0.3106967537216203 12.427154064344714 0.07657644748238872 0.04546584022257038 72.76542215492864 -1.8619250532862825 0.22644036023787173 FNLTGLNEQVPHYR ddPTM_BT-474_Trastuzumab_2h_R1 1 FNLTGLNEQVPHYR 14 0 P67870;Q5SRQ3;Q5SRQ6;N0E472;A0A0G2JM12;N0E644;A0A0G2JM58 P67870 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-562 Casein kinase II subunit beta 0 118.08 0.00026617 303280000.0 195850.0 145600.0 184840.0 200260.0 155600.0 161380.0 155920.0 139850.0 207100.0 174380.0 False True 194795.5653609805 150446.20798294124 210863.86534191866 225612.89546687965 175414.7376865439 150224.18044765794 148377.55392775792 150286.31714391068 156062.9799978227 163250.9191057708 1.1932279856554548 0.9215642325754176 1.2916549964738593 1.3820007673016794 1.0745099546599925 0.9202041940745658 0.9088926098579796 0.9205848148796008 0.9559699930185936 1.0 17.316731588631825 2.9413918783253514 4.604030276225443 0.934983295054177 1.1891246741333705 0.5338228684465329 0.11231746012160299 0.17871852181962547 7.760998761056143 0.03667149152596034 0.04000516399438368 873.7594349237463 -2.9413918783253514 0.25414137907919354 FNLTYVSHDGDDK ddPTM_BT-474_Trastuzumab_2h_R1 4 FNLTYVSHDGDDK 13 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;;; 177.88 1.507e-05 4280850000.0 7623900.0 5943500.0 4946630.0 4231290.0 5687680.0 6241200.0 5101550.0 6257800.0 8214100.0 6072500.0 False True 7582853.769494927 6141325.804578374 5643072.507121266 4766970.880156067 6411972.3344794465 5809760.534204507 4854768.536686468 6724788.812464531 6189845.118300894 5684947.85107119 1.333847551137364 1.0802783007800487 0.9926339968198593 0.8385249970688557 1.1278858667579978 1.0219549389727118 0.8539688777922043 1.1829112576991199 1.0888129988975306 1.0 22.438715684431838 4.718334728587999 3.051680815215209 1.018696752889205 1.3763010829062012 0.4673106979129157 0.10228613778351675 0.3152170612134275 4.515760582426309 0.025619951423679708 0.26610668581619096 52279.89763924144 -4.718334728587999 0.3576043300169962 FNNDSHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNNDSHSPK 9 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 FNNDSHS(1)PK;FNNDSHS(1)PK 116.24 0.00086714 1214640000.0 2308600.0 1860250.0 1716250.0 1584370.0 1528980.0 1924030.0 2142800.0 1875130.0 3001300.0 2039630.0 True False 2296170.754109571 1922167.2967051263 1957883.082087579 1784951.0795508833 1723686.5400255255 1791026.3347794483 2039144.5777090802 2015061.7223172057 2261669.8303595623 1909459.0671849032 1.202524208856068 1.006655408193148 1.0253600696316925 0.9347941048992577 0.9027093430008635 0.9379757678806601 1.0679174079994138 1.0553050112186964 1.184455780816459 1.0 20.864732562758125 -0.0866716856209826 7.668026855965939 1.0000014143577214 1.027797906685541 0.006767596446565438 0.09500263483096218 0.0 0.0 0.09422885970213168 0.022209955226284377 0.819083758362311 0.0866716856209826 0.027796492327819555 FNPFVTSDR ddPTM_BT-474_Trastuzumab_2h_R1 6 FNPFVTSDR 9 0 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KSS0;E5RHH1;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ;;;;; 148.14 0.00021104 4181650000.0 1885196.0 2163784.0 2140305.0 2011600.0 1893328.0 2101819.0 2064054.0 1814283.0 2399590.0 2204077.0 False True 1875046.3142009664 2235804.242404949 2441641.340135442 2266268.353746006 2134432.0981657403 1956525.1996797358 1964207.8225680117 1949674.0102024013 1808243.197358645 2063410.918854742 0.9087120248649629 1.083547742223779 1.1833034892975316 1.0983116998352689 1.0344193096304914 0.9481994990923421 0.9519227627515943 0.9448791767005535 0.8763369335867801 1.0 20.976599725284526 2.841274891052564 2.896486785203558 0.9405345439725948 1.077188117707678 0.4205698676032644 0.06934954056080023 0.2550036833972832 4.142823586669925 0.023338286174551415 0.024780024790154304 693.8648557781844 -2.841274891052564 0.13665357373508324 FNQTYQLAHGTAEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 FNQTYQLAHGTAEEK 15 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 ;; 211.7 1.2479000000000002e-09 1492870000.0 700420.0 706290.0 722020.0 698570.0 716950.0 871730.0 900210.0 776390.0 1126280.0 907690.0 False True 696649.0165439784 729798.4356886798 823674.1400896558 787008.8903740036 808249.33280442 811469.3569316948 856663.4031638467 834328.1642285374 848723.3853787916 849760.4470874933 0.8198181251336234 0.8588284359315892 0.969301575417817 0.9261538273185493 0.9511496276093454 0.9549389592242861 1.0081234141928033 0.981839254919608 0.9987795834552478 1.0 19.696696668030672 6.635042278917039 0.4044964045231418 0.9965911952729222 1.0778673130284e-07 0.8638360924859794 0.021955418075085765 8.037143583064626 0.3018067153808773 0.015385241654350937 5.333985336382423 4315610.876017466 -6.635042278917039 -0.9965910874861909 FNVLHWHIVDDQSFPYQSITFPELSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNVLHWHIVDDQSFPYQSITFPELSNK 27 0 P07686;Q5URX0 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A 0 175.71 5.129100000000001e-13 236920000.0 151260.0 151880.0 152800.0 152890.0 162450.0 160760.0 169180.0 60148.0 193320.0 118070.0 False True 150445.63296656578 156935.23398660112 174312.91183859104 172245.85832383513 183137.04458341323 149647.03958833506 160996.11706963883 64636.549185355354 145678.8763552827 110534.67151518732 1.3610718782105826 1.4197828774932255 1.5769976012878517 1.5582971022822352 1.6568289575841408 1.3538470557428104 1.4565214232126087 0.5847626658615833 1.317947340489148 1.0 16.75413944656233 1.7673789168396699 24.999999999769248 0.9313612685188356 1.4890692785700004 0.609335184036204 0.18854340812936382 12.347454501863407 10717.620674356445 0.08265629225224283 0.04584380872137035 58.530052927758106 -1.7673789168396699 0.5577080100511648 FNVWDTAGQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FNVWDTAGQEK 11 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 ; 202.16 9.5327e-08 1337240000.0 1781250.0 1516130.0 1661990.0 1284880.0 1314430.0 1709910.0 1665770.0 1591540.0 2446900.0 1894020.0 False True 1771659.9479154812 1566593.470530062 1895983.745723951 1447545.6762582846 1481814.869263007 1591707.946395185 1585190.3412406454 1710308.796476364 1843894.2817801652 1773142.0220478973 0.9991641537372712 0.8835126859836747 1.0692791226808651 0.8163732280093594 0.8357000459284019 0.8976765124300848 0.8940007746304628 0.9645639070135149 1.039902195567252 1.0 20.757876664668693 1.4968102391138058 3.5699216559908806 1.0181997902456275 0.9114517041728549 0.2665767403386843 0.07044253850360212 0.27981722700246386 7.381616315283652 0.04897753316031846 0.01852774932317291 31.39136777906286 -1.4968102391138058 -0.10674808607277253 FNVWDVGGQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FNVWDVGGQDK 11 0 P62330 P62330 ARF6 ADP-ribosylation factor 6 0 121.68 0.00094587 243500000.0 272620.0 234710.0 221460.0 209820.0 227990.0 277300.0 273920.0 270110.0 362840.0 284590.0 False True 271152.2442109297 242522.18046480857 252639.64303517234 236383.19048667056 257023.1750973985 258130.90369398624 260669.44312398287 290266.9797907879 273422.9438069048 266427.22255024296 1.0177347555383374 0.9102755271904455 0.9482501097932267 0.8872336250928462 0.9647031284460016 0.9688608439601467 0.9783889222311947 1.089479434617644 1.0262575317555718 1.0 18.023381973631796 1.9575117024139295 4.304936301268519 1.0468245987948508 0.946869084104831 0.5038914267628585 0.03907552760433228 0.1522771803629752 5.987550450216065 0.01741471963843431 0.010490370010888003 90.68003987203943 -1.9575117024139295 -0.09995551469001984 FNYSGSGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 FNYSGSGGR 9 0 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;; 157.34 0.00015997 861710000.0 583557.0 686509.0 611069.0 650718.0 657255.0 656607.0 630766.0 478251.0 760233.0 600795.0 False True 580415.193951278 709359.0370615453 697102.2036930362 733098.8320803796 740952.5283944049 611217.303576623 600253.4388198835 513940.5181293706 572883.7637502885 562451.7487335228 1.0319377533418708 1.2611909175477092 1.2393991222584104 1.3033986181589874 1.317361942713866 1.0867017570003221 1.067208769768214 0.9137504137672513 1.0185473954703768 1.0 19.101369811035486 2.3720328798315955 2.2474674119843874 0.9778955265124016 1.2352851231006554 0.6340630967185438 0.08239099094425377 0.18158747828250435 1.8800148286160379 0.03451990301302516 0.026410685315837325 235.522758815349 -2.3720328798315955 0.2573895965882538 FPAMSDAYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FPAMSDAYDR 10 0 P00491;G3V5M2 P00491 PNP Purine nucleoside phosphorylase 0 ; 90.761 0.024685 277060000.0 147840.0 211339.0 207150.0 203712.0 177735.0 172376.0 189004.0 142651.0 205886.0 186296.0 False True 147044.0458665683 218373.29085787645 236314.91941992263 229501.9183129379 200368.49873211994 160460.0528494577 179861.15445460443 153296.34198710066 155148.1540310561 174406.42978396986 0.8431113809777873 1.2520942669852628 1.3549667848406524 1.3159028517309401 1.1488595860846889 0.9200351904927646 1.0312759379192105 0.878960381087914 0.8895781779561213 1.0 17.412093702891408 2.822722831058342 4.091683331560329 0.9385905512793165 1.2097170387278144 0.4299853592657741 0.13715998916577227 0.2123045408841642 6.589213579248991 0.044132210874803186 0.04664618763051241 664.8487109542829 -2.822722831058342 0.271126487448498 FPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSER ddPTM_BT-474_Trastuzumab_2h_R1 1 FPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSER 40 3 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 43.041 0.034191 245430000.0 56028.0 36276.0 25269.0 26718.0 22963.0 50114.0 42928.0 39596.0 97937.0 41712.0 False True 55726.351473295974 37483.42473069493 28826.655557914644 30100.496060541755 25887.201937635647 46649.73713566695 40851.40863911488 42550.85458441397 73801.73863856478 39049.90444856013 1.427054745977765 0.9598851843561179 0.738200412138974 0.7708212474679086 0.6629261275590694 1.1946184707601004 1.0461333828083457 1.0896532318143208 1.889933910997983 1.0 15.25303139778208 1.4318965573210005 6.427469481205332 1.4654526363062084 0.9625012105860555 0.2880652597188662 0.29204060330258963 0.2149199797798196 17.59624953492299 0.18365306685221267 0.07155675836300193 27.033143969377807 -1.4318965573210005 -0.5029514257201528 FPDSVEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 FPDSVEELR 9 0 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 0 ;;; 227.3 4.7703e-07 1022110000.0 708290.0 829990.0 742710.0 757140.0 782460.0 808610.0 817770.0 761920.0 885800.0 812650.0 False True 704476.6453384166 857615.7154104508 847277.1122489532 852993.8463686869 882101.6429962295 752712.6939631962 778211.34091523 818778.3393513655 667506.4591118839 760785.9812553321 0.9259853134727817 1.127275917985956 1.1136865467091108 1.1212007941592292 1.1594609584428999 0.9893882281074441 1.0229044173910056 1.0762269015529746 0.8773905875742706 1.0 19.5371311368291 2.71746411206098 24.76951751377545 1.0068141214040243 1.0947217741984443 0.2798856979163886 0.07547271683989837 1048.5442065663758 1231099.7023116208 0.02426611883952997 0.022902410096724193 521.7519874646352 -2.71746411206098 0.08790765279442003 FPEDLENDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPEDLENDIR 10 0 O14929;F8W9G7 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 75.378 0.091134 26392000.0 23033.0 29503.0 24754.0 27452.0 28192.0 27236.0 26585.0 23761.0 26991.0 26719.0 False True 22908.99288720688 30484.98952005988 28239.14803437488 30927.420385283043 31782.084092924484 25353.239426647735 25298.981985437684 25534.16647591322 20339.429710870252 25013.770544713232 0.9158552424655865 1.2187282787121838 1.1289440743807952 1.2364157706651582 1.2705834986417817 1.0135712799207015 1.0114021770614159 1.0208043777434417 0.8131292990999742 1.0 14.610434923519685 2.5684780965513627 6.071837184053799 0.9756572675051389 1.1605865411366687 0.4278403522655778 0.1060882213082893 0.23242938561806026 12.61134637019736 0.034423249908972345 0.03224977443330383 370.2355322651911 -2.5684780965513627 0.18492927363152978 FPEFCSSPS(ph)PPVEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 FPEFCSSPSPPVEVK 15 0 Q68E01-2;Q68E01-3;Q68E01;Q68E01-4 Q68E01-2 INTS3 Integrator complex subunit 3 1 FPEFCSSPS(1)PPVEVK;FPEFCSS(0.001)PS(0.999)PPVEVK;FPEFCS(0.001)S(0.003)PS(0.996)PPVEVK;FPEFCS(0.001)S(0.009)PS(0.991)PPVEVK 191.96 1.6133e-07 975490000.0 1193090.0 1142110.0 963720.0 1001100.0 932990.0 1242500.0 1147680.0 1157480.0 1595590.0 1222800.0 True False 1186666.5360047605 1180124.4409299258 1099403.3991955942 1127839.157354906 1051800.7462350172 1156608.8995303926 1092162.3338366426 1243857.0351643458 1202378.2243106032 1144759.8571082507 1.0366073972949832 1.0308925785631657 0.9603790632323269 0.9852189962390123 0.9187959725386814 1.0103506795321016 0.9540536620453538 1.0865659093833198 1.0503322743583103 1.0 20.126613556908218 1.7408635174678175 24.99999999999981 1.051762881219525 0.984405035588385 0.3312369553152468 0.03905856551480018 0.38728600921670214 4230.956647960758 0.0181157738656388 0.010046193629761804 55.06346253186769 -1.7408635174678175 -0.06735784563114 FPEHELTFDPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 FPEHELTFDPQR 12 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2;J3QL06;J3KTF1;Q9BST8;J3QQH7;J3QLE9 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ;;; 169.89 4.2614e-05 2188440000.0 1486730.0 2322500.0 2043010.0 1941290.0 1855690.0 1651000.0 1933000.0 1782560.0 2324170.0 1704790.0 False True 1478725.6108712305 2399803.0085191047 2330648.0498387436 2187057.114955051 2092001.1219636446 1536870.2560359584 1839493.4052229105 1915583.6788562718 1751409.4457824216 1595988.8426558494 0.9265262834861152 1.5036464819676596 1.4603160044404597 1.3703461180315133 1.3107868088115153 0.9629580201065109 1.1525728476659338 1.2002487910057014 1.0973820110596388 1.0 20.606019135231964 2.8749789523873743 7.141971830058226 1.1098509517800443 1.3390783596804299 0.3328195430604818 0.16026796296389004 0.30753534187091275 16.58832760245896 0.04834036825546616 0.051382502161854686 749.8578674008232 -2.8749789523873743 0.22922740790038554 FPELGPDGHQR ddPTM_BT-474_Trastuzumab_2h_R1 3 FPELGPDGHQR 11 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 0 ;; 126.71 0.00030182 866580000.0 1061400.0 1227990.0 1134820.0 1145140.0 1063930.0 1240740.0 1289470.0 1045580.0 1470130.0 1265930.0 False True 1055685.5403326259 1268862.9048143686 1294592.7919677335 1290114.606586152 1199415.179092833 1154970.5641878007 1227093.4098462418 1123606.4889476607 1107836.1602327328 1185137.2635828007 0.8907706919459877 1.0706463662938552 1.092356836417443 1.088578214717503 1.012047478337546 0.9745458181748478 1.0354019298461707 0.9480813096289574 0.9347745567324597 1.0 20.176622732263564 2.2762294605761153 1.1918735217778957 0.9614571564175761 1.038593558912015 0.15838266789609945 0.059504556325776344 0.7660753554829608 2.1160482454084293 0.03876774040730391 0.02281409841515297 188.8989137618149 -2.2762294605761153 0.07713640249443887 FPGDQVVNGAGPELSTGPSPGS(ph)PTLDIDQSIEQLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPGDQVVNGAGPELSTGPSPGSPTLDIDQSIEQLNR 36 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 FPGDQVVNGAGPELSTGPS(0.136)PGS(0.728)PT(0.136)LDIDQSIEQLNR 170.44 1.1942999999999999e-17 32714000.0 18344.0 20162.0 17837.0 18554.0 19061.0 22363.0 22937.0 17058.0 21339.0 22148.0 True False 18245.237942209995 20833.079981813622 20348.29455801668 20902.934497615515 21488.305366601635 20817.098446839602 21827.449682150982 18330.95457876889 16080.289377950448 20734.49567814321 0.8799460679163175 1.0047546034010528 0.9813739805336268 1.0081236033944083 1.036355342331911 1.0039838330277533 1.0527118682302887 0.884080079077691 0.7755331804332775 1.0 14.339745336776918 1.6291874299212123 6.3213387663095 0.869246160608634 0.9972175683348734 0.34963236081847315 0.06692313678076828 0.11974700283168663 10.071786608707267 0.03342541788879239 0.016311897239433586 42.578212970422506 -1.6291874299212123 0.12797140772623938 FPGLALRPSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 FPGLALRPSSR 11 1 B4DF95;Q15735;B5MCL8;B5MBZ3;A0A087WVS7;Q15735-3;Q15735-2 B4DF95 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 1 FPGLALRPS(0.381)S(0.619)R;FPGLALRPS(0.203)S(0.797)R 62.732 0.047908 1001690000.0 558500.0 586600.0 592200.0 596325.0 519827.0 588900.0 642770.0 571994.0 703360.0 623810.0 True False 555493.0980551832 606124.6263928113 675576.6125053242 671819.6838574205 586023.8871939785 548190.7291214884 611676.7594801495 614679.0968066797 530026.352541133 583997.9117293893 0.9511902130098462 1.0378883455214734 1.1568134045286966 1.1503802845252735 1.0034691484745035 0.9386861119042954 1.0473954567214032 1.0525364636774717 0.9075826161288304 1.0 19.155603684735528 3.082765428052263 14.927341997123165 0.9991604821127036 1.077381566856437 0.2560570198331006 0.06807509444463954 1.981477418691192 353.2907174484163 0.020960577131956162 0.02505396598092991 1209.9444395757555 -3.082765428052263 0.07822108474373346 FPGQLNADLR ddPTM_BT-474_Trastuzumab_2h_R1 3 FPGQLNADLR 10 0 Q13509;A0A0B4J269;Q13509-2;G3V2A3;Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;M0R2D3;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q13509;Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;K7ESM5 TUBB3;TUBB;TUBB1;TUBB4B;TUBB4A;TUBB2A;TUBB8;TUBB2B;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 ;; 140.83 8.9771e-05 895900000.0 488100.0 619800.0 856690.0 480695.0 235316.0 348682.0 531770.0 313939.0 982240.0 423089.0 False True 485472.1238330081 640429.6683229876 977304.5055170333 541550.9377132312 265282.0977727942 324578.43404914066 506046.2535413281 337366.7223299409 740180.1133416768 396087.09779528365 1.22567012794727 1.6168910118198085 2.4673979812948867 1.3672521542045535 0.6697569783247633 0.8194622744740299 1.2776135763020395 0.8517488305168369 1.8687306843916347 1.0 18.595458181864842 3.482206475673085 24.70290493459308 1.056841648934909 1.7817849057481026 0.3492374445406716 0.4202261924696579 192.0698982625182 933035.2440914769 0.11403717555776141 0.15888678324348376 3035.3339233583633 -3.482206475673085 0.7249432568131935 FPGQLNADLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 FPGQLNADLRK 11 1 Q13509;A0A0B4J269;Q13509-2;G3V2A3;Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;M0R2D3;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q13509;Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;K7ESM5 TUBB3;TUBB;TUBB1;TUBB4B;TUBB4A;TUBB2A;TUBB8;TUBB2B;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 ; 112.64 0.0024023000000000004 4696500000.0 1365090.0 1675180.0 1691980.0 1496770.0 1165820.0 1530330.0 1804570.0 1302720.0 2766100.0 1608980.0 False True 1357740.5071157573 1730937.353632304 1930196.0770461995 1686260.9285327124 1314280.2666434867 1424541.8891093356 1717276.0549731527 1399935.5814781243 2084431.71884103 1506293.5188829193 0.9013784432417061 1.1491368262116552 1.2814209533860639 1.1194769859882678 0.8725260051694099 0.9457266271488631 1.1400673464005209 0.9293909612758136 1.3838151015791817 1.0 20.52257149270468 3.438420511495606 24.997664790251676 1.0327452425764145 1.128820867531631 0.03441550091096601 0.15974807118584988 438.45872148867875 283208.83247278805 0.04356630159622366 0.05898911905801361 2744.2300237091113 -3.438420511495606 0.09607562495521638 FPHHDNELAQSEAYFENDCWVR ddPTM_BT-474_Trastuzumab_2h_R1 3 FPHHDNELAQSEAYFENDCWVR 22 0 P49589-3;P49589;B4DKY1;P49589-2 P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic 0 ;; 153.19 2.0646e-08 365440000.0 125951.0 198090.0 171382.0 194570.0 186639.0 173314.0 166231.0 130306.0 151281.0 182455.0 False True 125272.89381047155 204683.3059020663 195511.09592095186 219202.54205028835 210406.37035397746 161333.21111727224 158189.77146591275 140030.09540046062 113999.8246115433 170810.56569241566 0.7334024877363539 1.1983058839032616 1.14460774208204 1.2833078630804007 1.2318112143768862 0.9445154078336722 0.9261123328329138 0.8197976210243195 0.6674049942368707 1.0 17.382037691787502 2.391965843964484 2.262652784244306 0.8291148538942318 1.1311758845717514 0.36820095179209134 0.16225296349793605 0.30163145850791506 3.161651491019901 0.06669822494813495 0.0519381984994522 246.5845397825592 -2.391965843964484 0.30206103067751966 FPLDYYSIPFPTPTT(ph)PLTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPLDYYSIPFPTPTTPLTGR 20 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;H0Y5H6;H7C2T8 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 FPLDYYSIPFPT(0.019)PT(0.125)T(0.847)PLT(0.009)GR 156.22 2.3415e-07 76438000.0 215990.0 103560.0 83594.0 125100.0 64347.0 121280.0 61150.0 105830.0 216260.0 111110.0 True False 214827.13383874513 107006.931996658 95363.30858792659 140937.64717320798 72541.20903545007 112896.19906241141 58191.940884314965 113727.57199385116 162965.62073553418 104018.86467394306 2.065270895929705 1.0287262058866082 0.9167885929812046 1.354923913224686 0.6973851258888215 1.0853435039528185 0.5594364163339323 1.093336024675341 1.5666929383085009 1.0 16.66648567110584 4.738377327853368 7.4033933320550815 1.0149974023884973 2.077407518971604 0.5603312854797483 0.2737315767616065 0.07110104616435306 36.2275470100893 0.06325007821483027 0.37911530559331447 54749.14330155412 -4.738377327853368 1.0624101165831066 FPLGDGQSLLLADALHTHSPLFLEGSSRDS(ph)PPLLDAPAS(ph)PPQASR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASR 45 1 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 2 FPLGDGQSLLLADALHTHSPLFLEGS(0.137)S(0.05)RDS(0.813)PPLLDAPAS(1)PPQASR 178.54 1.7330000000000002e-28 136570000.0 38513.0 46552.0 45334.0 51589.0 45438.0 56148.0 46377.0 20448.0 52414.0 41581.0 True False 38305.65028719658 48101.455178721735 51716.63314980814 58120.162110460675 51224.25996787392 52266.62091817508 44133.567332655395 21973.93359284011 39497.27201161698 38927.26498071488 0.9840313802208747 1.2356751804307824 1.3285452542178162 1.4930450967786777 1.3158967112960838 1.342673854535342 1.1337443654086614 0.5644869631536228 1.0146428738619189 1.0 15.248493364425462 1.957073763538572 6.832039656991192 0.8180362877927084 1.290216427624995 0.558800298796579 0.16701606585858936 0.14851000106931161 18.813846011018573 0.071422321943141 0.04502174041706517 90.5886449769149 -1.957073763538572 0.47218013983228657 FPLGDGQSLLLADALHTHSPLFLEGSSRDS(ph)PPLLDAPASPPQASR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASR 45 1 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 FPLGDGQSLLLADALHTHSPLFLEGS(0.052)S(0.052)RDS(0.896)PPLLDAPASPPQASR 153.94 5.704100000000001e-15 571730000.0 77669.0 114040.0 90901.0 94556.0 93567.0 102270.0 117420.0 31910.0 120470.0 89914.0 True False 77250.8387338371 117835.75246136429 103699.07067434395 106526.77990495488 105482.20283494123 95200.31561768471 111739.94601204027 34291.286235696745 90781.78271529556 84175.61154075168 0.9177342144575675 1.3998799688472334 1.2319372413961072 1.2655302165922775 1.2531207187473115 1.1309726638765871 1.3274622419338642 0.40737792821493685 1.0784808218630602 1.0 16.361114676904478 1.761786804725525 24.999999999999996 0.773246915535182 1.2254370469093903 0.4207812271702285 0.2062292581072295 9.428453789335354 10156.15277652672 0.0875941014868671 0.048577316837639856 57.781232954950205 -1.761786804725525 0.45219013137420827 FPPEASGYLHIGHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 FPPEASGYLHIGHAK 15 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 161.76 9.4485e-07 417150000.0 313580.0 369840.0 345260.0 322700.0 328860.0 378330.0 367840.0 163760.0 415720.0 343510.0 False True 311891.7201220135 382149.90082699934 393869.6069462824 363553.7869128233 370738.3716940674 352176.9375930249 350046.1739147415 175980.60275643083 313271.3763626017 321586.89770629286 0.9698520752759833 1.188325468334282 1.224768825333194 1.1304993751482346 1.152840412150948 1.095122158598234 1.088496379707735 0.5472256612803763 0.9741422259333283 1.0 18.294849102971 1.9073347445779818 9.032155359156711 0.7952915577083125 1.1318441848152043 0.47833184031744613 0.132404458909721 0.25369372600158907 23.009082893545408 0.0530521407424981 0.03352230657819762 80.78574690004511 -1.9073347445779818 0.3365526271068918 FPPEDFRHS(ph)PEDFR ddPTM_BT-474_Trastuzumab_2h_R1 8 FPPEDFRHSPEDFR 14 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR 192.62 2.1302e-07 3204298000.0 1567041.0 1980885.0 1814507.0 1881804.0 1868003.0 1994268.0 1874298.0 1687197.0 2143774.0 1901211.0 True False 1558604.225370624 2046817.5597547318 2069973.8136224248 2120040.193454287 2105882.1095287735 1856408.9471619155 1783631.045226328 1813104.2075527676 1615469.622799866 1779874.0862713733 0.875682295389623 1.1499788527415293 1.1629889044335582 1.191118073916971 1.1831635314947186 1.0430001546069327 1.002110800412194 1.0186699281357634 0.9076314078958724 1.0 20.763343753472512 2.47333603326497 3.632961158951043 0.9890086984648206 1.121864232310924 0.3169529702508441 0.08930833896981392 0.28094321974362296 8.068808222324819 0.032183047452832216 0.02784329956721769 297.3966233796853 -2.47333603326497 0.13285553384610338 FPQGPPSQMGS(ph)PMGSR ddPTM_BT-474_Trastuzumab_2h_R1 7 FPQGPPSQMGSPMGSR 16 0 Q8WXF1 Q8WXF1 PSPC1 Paraspeckle component 1 1 FPQGPPS(0.014)QMGS(0.986)PMGSR;FPQGPPS(0.007)QMGS(0.993)PMGS(0.001)R;FPQGPPS(0.002)QMGS(0.997)PMGS(0.001)R;FPQGPPSQMGS(0.997)PMGS(0.003)R;FPQGPPSQMGS(1)PMGSR;FPQGPPSQMGS(1)PMGSR;FPQGPPSQMGS(0.999)PMGS(0.001)R 204.26 2.6924e-11 3731590000.0 1098350.0 1082693.0 1051324.0 992678.0 1057482.0 1164373.0 1069499.0 1076955.0 1188092.0 1112132.0 True False 1092436.6056381562 1118729.78200326 1199341.2809279764 1118350.9330184327 1192146.0645131236 1083882.6351492172 1017763.2474870657 1157322.8507666804 895302.6462171557 1041154.7836158905 1.0492547533078278 1.0745086125599448 1.151933698813456 1.0741447387240952 1.1450228950328079 1.0410389043067492 0.9775330849006073 1.1115761738589365 0.8599131083159451 1.0 19.98975313263522 1.7950098671851904 0.9285791533576714 0.9636989816327226 1.0963538738829166 0.37947197905409524 0.06511947751754041 0.6083863498093217 0.977327824975063 0.05526688517352994 0.02373802369276747 62.37490069197819 -1.7950098671851904 0.132654892250194 FPQLDSTSFANSR ddPTM_BT-474_Trastuzumab_2h_R1 3 FPQLDSTSFANSR 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 179.6 1.0836e-06 0.0 85578.0 108148.0 92152.0 127380.0 120313.0 104290.0 109996.0 124285.0 130136.0 124271.0 False True 85117.25755660955 111747.64080315357 105126.20060045722 143506.2949394343 135634.14739897926 97080.67777225326 104675.07325447447 133559.77780644226 98065.72653305955 116339.91838624424 0.7316255567072292 0.9605270688961248 0.9036124664574897 1.2335086437227736 1.1658435838735839 0.8344571589774455 0.8997348004573725 1.1480133359130331 0.8429241475611574 1.0 16.827986671648937 4.856617126745452 1.6216455997175054 1.0188069722971094 0.5682345416691618 0.2721928908885056 0.1324711107626223 1.8481265273984717 3.7196863883939004 0.03571201379311371 1.4275449281395303 71881.49925461548 -4.856617126745452 -0.4505724306279476 FPQS(ph)PHSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPQSPHSGR 9 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 FPQS(1)PHSGR 62.924 0.051166 141100000.0 67294.0 98571.0 102490.0 112660.0 114870.0 99933.0 93368.0 90211.0 84328.0 98537.0 True False 66931.69658106624 101851.8761475722 116919.70114095022 126922.74444871004 129498.01361216774 93024.86692697844 88851.43313960297 96943.00290217625 63546.49433730752 92248.28429822999 0.7255603406637069 1.1041059128893358 1.2674458070456884 1.3758818975795886 1.4037986136795009 1.008418396446679 0.9631770803709984 1.0508922050926028 0.6888636988831978 1.0 16.49323445866337 2.499367810399564 21.84653775811371 0.9493256706867084 1.1895015151437098 0.26136705227815205 0.1975312578663055 226.7223905097687 222645.9222885774 0.06753649378482353 0.06302750424047233 315.7677775110688 -2.499367810399564 0.24017584445700146 FPS(ph)PHPS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 1 FPSPHPSPAK 10 0 O14681-3;O14681;B7ZB74 O14681-3 EI24 Etoposide-induced protein 2.4 homolog 2 FPS(1)PHPS(1)PAK 57.136 0.063153 67644000.0 136750.0 189270.0 171020.0 156780.0 175820.0 214390.0 168600.0 149490.0 182280.0 200580.0 True False 136013.75319435322 195569.7375338688 195098.1294675119 176628.33192498435 198209.63483321454 199569.7239197755 160444.17388545384 160645.70289483888 137359.5364268621 187778.81267482223 0.7243296049053687 1.041489903722728 1.0389783953174982 0.9406190688342074 1.0555484509131252 1.0627914889704393 0.8544317199581831 0.8555049454542567 0.7314964583609785 1.0 17.518674765472444 2.1853576693823697 11.791634890705215 0.8491697116230732 0.9848820779834832 0.20537049249360007 0.11122277651433868 1.0128464884069475 221.55076665242404 0.040287013460409776 0.029767154618021846 153.23489298629758 -2.1853576693823697 0.13571236636040995 FPS(ph)SPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FPSSPLR 7 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 FPS(0.699)S(0.301)PLR 73.248 0.051826 43553000.0 101930.0 113190.0 146970.0 91209.0 49980.0 89549.0 131020.0 79471.0 164290.0 102380.0 True False 101381.22020548761 116957.46072520016 167662.09851385964 102756.05004813043 56344.656745330765 83358.6884056718 124682.06205499501 85401.52956556114 123802.93087321248 95846.02074807216 1.057750957360708 1.2202641258588989 1.7492859610160914 1.0720951088644675 0.5878664164204656 0.869714650176006 1.300857991618842 0.8910284318431541 1.291685663180781 1.0 16.548430916125266 3.4963230602861617 24.578246772841922 0.9804997343279935 1.3436290681601302 0.2811917557330448 0.2521484572245321 766.1652328223145 980686.8480282857 0.06811355047512992 0.10367094284431021 3135.6173605849026 -3.4963230602861617 0.36312933383213664 FPSLLTHNENMVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 FPSLLTHNENMVAK 14 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ; 190.03 6.496600000000001e-07 3105400000.0 2899900.0 2888200.0 2881500.0 2456000.0 2483300.0 3177400.0 3103500.0 2702000.0 3612900.0 3275900.0 False True 2884287.260609176 2984331.9910462345 3287190.153553011 2766929.3481806484 2799533.535327732 2957753.816795066 2953371.848478683 2903636.960477988 2722549.205379687 3066829.257360904 0.9404785915898002 0.973100143701622 1.071853004422468 0.9022117359613531 0.9128429724636227 0.9644338072280879 0.9630049802707782 0.9467879418160541 0.887740717500041 1.0 21.548316417567307 3.702237913457157 24.99931693011384 0.9392238727558352 0.9929396737720084 0.25358912123395816 0.04363656222218792 789.0446303611737 543064.7798179633 0.01147174485619812 0.017772720130076566 5037.765100319293 -3.702237913457157 0.05371580101617324 FPTTATKIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 FPTTATKISPK 11 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8;H0YHI8;H0YIS4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 FPT(0.004)T(0.004)AT(0.017)KIS(0.975)PK 55.18600000000001 0.07686799999999999 586590000.0 775400.0 706140.0 653070.0 624290.0 571840.0 873590.0 829060.0 717960.0 1424900.0 832890.0 True False 771225.3325550385 729643.4430293568 745016.5794138 703325.0499901046 644660.434438775 813200.779509663 788955.2004832417 771537.8209270079 1073752.487681785 779734.2471269964 0.9890874171510232 0.9357591329581791 0.955474999538475 0.9020061034661122 0.826769424087869 1.0429204341171074 1.0118257642141804 0.9894881798123027 1.3770749350026963 1.0 19.572622975744054 1.3960927066761144 8.086416735024054 1.1905075282646027 0.9541034227569285 0.4583816408353407 0.10145017472246053 0.20283484081718245 17.241825880465058 0.06376405915032182 0.023533719967951106 24.89388658945129 -1.3960927066761144 -0.2364041055076742 FPVIQHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FPVIQHFK 8 0 Q15257;Q15257-2;A6PVN5;F6WIT2;Q15257-3;Q15257-4;Q68CR8;B7ZBQ0 Q15257 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator 0 103.92 0.0046803 565110000.0 922780.0 1004700.0 950240.0 786620.0 669820.0 889860.0 961370.0 821140.0 1293600.0 969480.0 False True 917811.8550104969 1038140.8321460255 1084025.5323658567 886206.0113460352 755117.6066658148 828346.0727051247 914864.8603099572 882417.6364644335 974809.6133519226 907606.9563864134 1.0112437421862803 1.143822030936525 1.19437772566425 0.9764204704582864 0.831987460378525 0.9126704757785666 1.0079967477909608 0.9722464446259097 1.0740437878892783 1.0 19.79170814107787 3.6525922772277704 7.2840326345955635 0.9613802723963457 1.1187926856924693 0.4625356584889231 0.07322522290821515 0.22893461122817124 16.907148143353183 0.02035358439775347 0.03164886382348127 4493.577923498986 -3.6525922772277704 0.15741241329612354 FPYSPS(ph)PPMANGAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FPYSPSPPMANGAAR 15 0 Q92908-2;Q92908 Q92908-2 GATA6 Transcription factor GATA-6 1 FPYS(0.01)PS(0.99)PPMANGAAR;FPYS(0.003)PS(0.997)PPMANGAAR 157.7 1.9977e-06 466390000.0 122887.0 120565.0 133189.0 144234.0 104837.0 130161.0 123871.0 116840.0 145878.0 128863.0 True False 122225.39004602935 124577.93314191842 151940.85350045873 162494.00961135485 118187.37053241784 121163.2764360366 117878.88649682727 125559.19410149829 109928.32156505247 120638.85301483523 1.0131511282770487 1.0326518366897834 1.2594686512957334 1.346945909634706 0.9796791628803374 1.0043470524469997 0.9771220759395933 1.0407857084488195 0.9112182254545668 1.0 16.88033509166336 3.13274439119723 22.324269572999167 0.9914151927630072 1.1610508227363878 0.45029342570448305 0.09594789970761516 4.867199874342129 1008.7996747918137 0.029805222412783872 0.03562409570551517 1357.5142314575564 -3.13274439119723 0.16963562997338066 FQAPS(ph)PSTLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQAPSPSTLLR 11 0 Q6P9B9 Q6P9B9 INTS5 Integrator complex subunit 5 1 FQAPS(0.989)PS(0.011)TLLR;FQAPS(0.914)PS(0.067)T(0.018)LLR 182.03 6.2573e-06 190766000.0 212134.0 279930.0 255250.0 264590.0 257090.0 242330.0 255450.0 241950.0 282150.0 258310.0 True False 210991.8941143033 289247.30082874134 291186.9813272276 298087.0668709759 289828.8876081847 225578.29748346106 243092.90758623477 260005.53759720575 212617.9131162995 241824.4346496827 0.8725003096562812 1.1961045261937961 1.2041255539335949 1.2326590044665986 1.1985095221169164 0.9328184631558987 1.005245429141144 1.0751830681372665 0.8792242745209224 1.0 17.883600500524647 2.74164223424428 24.9908454238923 0.9929577499617549 1.152476993070455 0.3579021664888016 0.10724721805557964 314.0959730993416 2547219.820845285 0.033646972998095506 0.03433721613057446 551.6228328373578 -2.74164223424428 0.15951924310870014 FQAQSLGTTYIYDIPEMFR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQAQSLGTTYIYDIPEMFR 19 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 240.2 1.7624e-26 47798000.0 100157.0 115299.0 120131.0 116647.0 103503.0 117243.0 123319.0 106474.0 113989.0 134391.0 False True 99617.76584048882 119136.65751528273 137044.40060262932 131414.49823991358 116683.49353965538 109138.26737033566 117353.58884567203 114419.63054401694 85897.93832434478 125814.05132207627 0.7917856932010991 0.9469264860591777 1.089261486793745 1.0445136839564964 0.9274281553890414 0.8674569034499047 0.9327542322379718 0.9094344339259031 0.6827372413630598 1.0 16.94093353052227 3.0015027553406206 24.36154579605705 0.8822375373358852 0.97659949691116 0.13828131443901726 0.10465186614764228 71.38653852399375 1157206.313279073 0.030829994263245602 0.036568486435110834 1003.4662155249623 -3.0015027553406206 0.09436195957527482 FQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYR ddPTM_BT-474_Trastuzumab_2h_R1 3 FQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYR 36 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ;; 330.1 3.739599999999998e-129 522178000.0 118637.7 139936.0 137844.0 154887.0 131001.3 139663.0 139887.0 103383.0 169916.0 146291.0 False True 117998.96780508774 144593.68516690165 157251.2370384733 174495.6783190782 147683.53904946195 130008.42554133863 133120.13138976565 111097.9644282369 128042.47855774993 136954.5831339737 0.8615919606695971 1.0557783599359731 1.1481998881676323 1.2741134639384832 1.0783395171594425 0.949281306009014 0.9720020195274731 0.811202968794093 0.9349265692882607 1.0 17.06333802053866 2.641963765874772 2.8588185491673443 0.9083129691634683 1.0971884260349982 0.32307277405683543 0.10664506269182181 0.29589007764772296 4.705885283298849 0.039584632873937625 0.03725041421339375 438.4941117393789 -2.641963765874772 0.18887545687152996 FQDNFEFVQWFK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQDNFEFVQWFK 12 0 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 ; 248.42 2.1823e-16 1182070000.0 580150.0 572930.0 546690.0 492890.0 473360.0 626730.0 595970.0 540720.0 691980.0 561360.0 False True 577026.5368607241 591999.6287065007 623659.2000853363 555289.8234628501 533639.5901754659 583405.6302637295 567140.6542735115 581071.2721205249 521450.80105694436 525533.5241955251 1.0979823556337787 1.1264735767574874 1.1867163013815718 1.0566211248138266 1.015424450785227 1.1101206743314687 1.0791712196508827 1.1056787918715856 0.9922312793559069 1.0 19.00342327220747 2.7538902792533495 0.04712091341418094 0.7421674378275573 1.4292611550551189 0.386503192248717 0.04578643768802128 122.1911514684166 2.2553147770730217 14.202961073608742 18.383949893618375 567.4012382810517 -2.7538902792533495 0.6870937172275615 FQEAEERPK ddPTM_BT-474_Trastuzumab_2h_R1 1 FQEAEERPK 9 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 100.88 0.0039781 677160000.0 768770.0 694910.0 716490.0 646910.0 598020.0 779910.0 798410.0 776280.0 1033700.0 829800.0 False True 764631.0277383769 718039.6592680339 817365.5641572789 728808.7396708226 674174.3022577573 725996.6574106636 759787.8580776118 834209.9554699686 778958.4858703495 776841.4535724784 0.9842819589789537 0.9243065698489296 1.0521652267633779 0.9381692188531306 0.8678402770055803 0.9345493267281326 0.9780475212587564 1.0738484045021908 1.0027251793633507 1.0 19.5672606618929 1.95843492786101 6.706918424766216 1.032299383322894 0.9498477718899917 0.32709177928342925 0.04801222334223248 0.24494885330619193 30.571685851467638 0.02125908216208785 0.013406403828320411 90.87301300694672 -1.95843492786101 -0.08245161143290225 FQEHLQLQNLGINPANIGFSTLTMESDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQEHLQLQNLGINPANIGFSTLTMESDK 28 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 314.79 8.530199999999997e-83 2075120000.0 2118900.0 1589670.0 1547520.0 1304580.0 1429570.0 2113400.0 1952390.0 1927810.0 2585300.0 1962300.0 False True 2107492.077831922 1642581.204974191 1765397.3647150309 1469739.6942383982 1611617.26577476 1967305.6324084802 1857945.4368459135 2071672.9714208264 1948187.4562451497 1837064.333990446 1.1472064635069457 0.8941337407635576 0.9609883181827709 0.8000480261057868 0.8772786210889125 1.0708964275274593 1.0113665604786468 1.12770844933926 1.0604895104644068 1.0 20.808970719836463 2.7269315834435846 24.416644788095315 1.0637613335775509 0.9274519779690175 0.29810600849368263 0.0895754040197964 616.5214474733333 1294463.1531119365 0.029001756974194152 0.027561673349185235 533.2508832229125 -2.7269315834435846 -0.1363093556085334 FQEHLQLQNLGINPANIGFSTLTMESDKFICIR ddPTM_BT-474_Trastuzumab_2h_R1 3 FQEHLQLQNLGINPANIGFSTLTMESDKFICIR 33 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 201.39 7.217e-27 555580000.0 201109.0 212620.0 198917.0 183633.0 185327.0 234778.0 255047.0 220624.0 247118.0 229772.0 False True 200026.25148931018 219696.9281684956 226922.78458244118 206880.91897168415 208927.2949308105 218548.3494679654 242709.4022358442 237088.08318597174 186219.08011154982 215107.7542422938 0.9298886141687107 1.0213343026259882 1.0549261014869744 0.9617548177210614 0.9712680775583676 1.015994752201244 1.128315448649333 1.1021828758386816 0.8657013819306381 1.0 17.714700006660664 2.4725473261363167 24.99090196611218 1.0470327613153791 0.9921396833873737 0.015106378494856187 0.07400681041587613 311.91953074815007 1704238.062260219 0.025982945004150663 0.02181488881619957 296.85702182254664 -2.4725473261363167 -0.05489307792800546 FQEKPDR ddPTM_BT-474_Trastuzumab_2h_R1 6 FQEKPDR 7 1 Q12765;Q12765-2;Q12765-3 Q12765 SCRN1 Secernin-1 0 ;;;;; 98.523 0.010215 3620460000.0 4969670.0 4761310.0 4427190.0 4149230.0 4211440.0 5130180.0 5366700.0 4784740.0 6175320.0 4972410.0 False True 4942913.848902245 4919787.3250773195 5050499.870174684 4674522.092569858 4747741.920839452 4775542.731744736 5107092.218215095 5141801.595217416 4653495.131048545 4655066.53670562 1.0618352734438752 1.0568672405183368 1.0849468703295724 1.0041794366870656 1.0199084982788278 1.0258806601558004 1.0971040215956553 1.1045602795736316 0.9996624311071208 1.0 22.150370358265967 2.2669013462374994 24.999219562128605 1.0652809820190203 1.042125278346379 0.0 0.03969865529850995 626.4192558151766 552560.2128193687 0.0141446521514392 0.011832245543009174 184.88485892627642 -2.2669013462374994 -0.023155703672641303 FQEKPDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 FQEKPDRR 8 2 Q12765;Q12765-2;Q12765-3 Q12765 SCRN1 Secernin-1 0 93.111 0.0063560000000000005 77245000.0 116130.0 130220.0 122490.0 134000.0 116210.0 120780.0 133680.0 92500.0 173610.0 122460.0 False True 115504.76898325606 134554.2939803476 139735.52729783376 150964.3862606704 131008.65466936551 112430.76288553806 127213.38769280823 99402.81970548267 130826.14175481393 114644.49795671932 1.007503814329245 1.173665517128826 1.2188594288282968 1.3168044603210056 1.1427382648474242 0.9806904377389573 1.1096336061485823 0.8670526844036537 1.1411462746707959 1.0 16.80680759288776 2.8415625694184317 4.648659852197702 1.0073465748478105 1.1864543277198962 0.366164394609655 0.09977164482287705 0.2251614424485457 7.939184466036081 0.031181382821030362 0.03316034980755511 694.3246268366617 -2.8415625694184317 0.1791077528720857 FQELIFEDFAR ddPTM_BT-474_Trastuzumab_2h_R1 8 FQELIFEDFAR 11 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ;;;;;;; 209.97 3.3361000000000003e-08 847439200.0 1077219.0 1325603.0 1228931.0 1283239.0 1160852.0 1305299.0 1361017.0 1117505.0 1439781.0 1316854.0 False True 1071419.3725942825 1369724.894511064 1401953.8027402598 1445696.9258265407 1308679.621291131 1215066.7524733387 1295179.4081201584 1200898.8976754094 1084966.2646269687 1232811.2503045693 0.8690863036248132 1.1110580749264496 1.137200688583839 1.1726831057628468 1.0615409463271999 0.9856064763954363 1.0505901919699232 0.974114161741081 0.8800749217359307 1.0 20.23352050199729 2.0185401329258745 1.192900868619456 0.9438601303219801 1.0766850618667714 0.2373575966635253 0.0846092951034589 0.6511542684929942 1.716926957583145 0.063849676223761 0.030106143697857492 104.36145681490646 -2.0185401329258745 0.13282493154479125 FQEMIETTLDMDQVENHEFLVKPSFDPNLSELR ddPTM_BT-474_Trastuzumab_2h_R1 1 FQEMIETTLDMDQVENHEFLVKPSFDPNLSELR 33 1 A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;P43246;P43246-2;A0A2R8Y7S8 A0A2R8YFH0 MSH2 DNA mismatch repair protein Msh2 0 49.942 0.045362 122840000.0 46851.0 43717.0 40563.0 39632.0 44498.0 60895.0 55173.0 47336.0 65663.0 55394.0 False True 46598.75942163544 45172.09391751542 46273.917820083596 44649.407136439506 50164.55653969046 56685.47198141112 52504.07120867227 50868.452687337565 49481.23348912127 51858.707494810595 0.8985715547634598 0.8710609288138488 0.8923075806452396 0.860981873505187 0.9673314080323026 1.0930752947725033 1.0124446548137795 0.9809047534095963 0.9541547770752435 1.0 15.662298629048326 3.101391629390749 4.7511577701269365 1.0073243208579963 0.8815139604169681 0.7491655275737473 0.034762502667020155 0.10965069912410666 4.179481069588451 0.010822426276133097 0.013060073529437876 1262.9659133797102 -3.101391629390749 -0.12581036044102822 FQESEERPK ddPTM_BT-474_Trastuzumab_2h_R1 6 FQESEERPK 9 1 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;;;; 195.36 2.8596e-05 6798350000.0 5757920.0 5295840.0 4701810.0 4556120.0 4504750.0 5933090.0 5765150.0 5315550.0 7698850.0 5645890.0 False True 5726919.998485058 5472108.832997121 5363783.97913485 5132924.324850489 5078403.21075488 5522949.453291577 5486267.669488278 5712223.332815976 5801571.5768046165 5285564.466510391 1.083502062035402 1.0352931777993977 1.014798705629278 0.9711213168192276 0.9608062190768658 1.0449119461668228 1.0379719525226783 1.0807215329618847 1.0976257339331823 1.0 22.333626120317135 2.245727427657432 2.419171994336468 1.0654156011036418 1.0123718374127153 0.16801909837742413 0.04041909592652522 0.42975910584822535 5.144794269534493 0.01845902035179236 0.012916721048219624 176.08705401766832 -2.245727427657432 -0.05304376369092645 FQEYIDAHPETIVLDPLPAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQEYIDAHPETIVLDPLPAIR 21 0 Q13572-2;Q13572;G3V588;G3V5A3 Q13572-2 ITPK1 Inositol-tetrakisphosphate 1-kinase 0 ; 125.04 2.3767e-05 286950000.0 356640.0 406090.0 401130.0 384420.0 391830.0 412490.0 415570.0 388260.0 496610.0 473030.0 False True 354719.88986642903 419606.46016341087 457605.6173155372 433087.5325845293 441727.227941636 383975.53719701566 395467.29146843444 417233.9327443313 374227.1197330691 442840.82041864225 0.801009919390657 0.947533381784302 1.0333410928173625 0.9779756350715533 0.9974853436592555 0.8670734934372627 0.8930235724307823 0.9421758643430763 0.8450601265242242 1.0 18.756428688203062 2.7387860691315993 24.99941612460828 0.9076096788402424 0.957271455352584 0.08114106467598292 0.06916941925045747 48.90982659119474 5423602.622400844 0.021825824150453078 0.021871570436038667 548.0069534704376 -2.7387860691315993 0.049661776512341604 FQFDGDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQFDGDKK 8 1 P52209-2;P52209;K7ELN9 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ; 87.913 0.024031 8627700000.0 11548800.0 8897700.0 7532100.0 7625200.0 7187400.0 10820800.0 11023500.0 10056700.0 16792900.0 11836200.0 False True 11486622.543992301 9193854.565726766 8592554.209813172 8590549.53817062 8102672.786942591 10072783.565423325 10490251.191140577 10807182.02088787 12654514.8083314 11080803.582519352 1.036623603915618 0.8297100925271012 0.7754450429360966 0.7752641290134173 0.7312351244746413 0.9090300618010917 0.9467049129622325 0.9753067041037405 1.1420213989078078 1.0 23.40155917398107 1.9543776466384954 1.4394370904658185 1.0561585922769994 0.8269005614716428 0.5168730504145969 0.08742387585821777 0.33147528948042254 1.277126272012426 0.06299486065601245 0.028841864709373513 90.02800919854246 -1.9543776466384954 -0.22925803080535656 FQGEDTVVIASKPYAFDR ddPTM_BT-474_Trastuzumab_2h_R1 3 FQGEDTVVIASKPYAFDR 18 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 195.39 2.1899e-15 1951930000.0 1207660.0 1314250.0 1283480.0 1241570.0 1280290.0 1529440.0 1423850.0 1245060.0 1622010.0 1455700.0 False True 1201158.0927436405 1357994.0167690981 1464182.827791851 1398752.6346989614 1443327.3426266417 1423713.4127144984 1354972.9358647908 1337972.6994865744 1222287.369320464 1362795.9797125268 0.881392453914501 0.9964763889717069 1.0743962042658146 1.0263844739210484 1.0590927505752568 1.0447003321911925 0.9942595634532279 0.981785035621261 0.8968968117871157 1.0 20.37813816588534 -0.8491501257960012 6.280122757758048 0.9999921012877111 1.0003622001197003 0.0 0.060687461568923 0.0 6.165397113542451e-19 0.059591910891775166 0.014045947261275829 0.14153044565949413 0.8491501257960012 0.00037009883198924065 FQLEELRK ddPTM_BT-474_Trastuzumab_2h_R1 1 FQLEELRK 8 1 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 0 78.516 0.048781 253180000.0 273720.0 278080.0 275810.0 239040.0 251640.0 298130.0 279630.0 237450.0 437370.0 311470.0 False True 272246.32193315093 287335.72469709016 314641.65061650414 269302.4394906769 283684.8624128659 277520.9748225323 266103.2286096649 255169.72474666894 329586.0239577384 291591.71793711704 0.933655879732023 0.9854042725556948 1.0790486535161397 0.9235599741853886 0.9728838130925369 0.951745052245897 0.9125884318396559 0.8750924976603669 1.1302996747967136 1.0 18.15359021789887 4.757037768575665 21.541593579490854 0.969874070224161 0.9336556689945581 0.016207393707092344 0.07317932106727165 3062.6817558904136 3570224.3220611117 0.0176220114699598 0.459869229345145 57152.83376779445 -4.757037768575665 -0.03621840122960285 FQMQVLPQCGHAVHEDAPDKVAEAVATFLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQMQVLPQCGHAVHEDAPDKVAEAVATFLIR 31 1 Q9Y570;Q9Y570-4;Q9Y570-2 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 ; 118.61 1.7702e-05 335490000.0 622370.0 672340.0 600600.0 570080.0 571700.0 694210.0 744070.0 272807.0 971120.0 655810.0 False True 619019.2290718071 694718.4304618879 685159.2594912158 642252.0695483811 644502.60626862 646220.8966945626 708076.4914765694 293165.2436258767 731800.4883413103 613955.6443328114 1.008247476484231 1.1315449851704544 1.1159751780371394 1.046088712558901 1.0497543466173427 1.0525530674073598 1.1533023566320326 0.47750231850129965 1.1919435794691025 1.0 19.22777490525605 FQNVADLHLYLYSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 FQNVADLHLYLYSAK 15 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;; 199.15 7.5659e-09 2774787000.0 5166680.0 5475280.0 5177880.0 5016250.0 4855210.0 5633400.0 5797450.0 5458060.0 7999700.0 5906960.0 False True 5138863.1689521065 5657521.384923348 5906880.497060241 5651306.735672295 5473492.214415712 5243976.317597201 5517005.195090303 5865368.152667093 6028281.125488076 5529972.755597108 0.9292745906841686 1.0230649652291945 1.0681572510608934 1.0219411533180485 0.9897864702634873 0.9482824869778177 0.9976550407967779 1.060650461022709 1.090110456581655 1.0 22.398840942105718 1.737794010312667 6.469136264643567 1.0560922272839517 0.9993989207041161 0.24674162376264686 0.04214628989675236 0.19653773004480113 22.83592147131795 0.021718545595577572 0.011371262485386108 54.67565699391723 -1.737794010312667 -0.05669330657983562 FQPLDQVVVDNVFPNCILLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FQPLDQVVVDNVFPNCILLLK 21 0 Q5TBB1;A0A2R8YEC1;A0A2R8YEH2;A0A2R8Y6Y1;A0A2R8YGP2;A0A2R8Y6Q6;A0A2R8YCJ4;A0A087WZJ6;A0A2R8Y761;A0A087WXR7;A0A2R8YCX2;A0A2R8Y7Q3;A0A2R8Y883;A0A2R8Y6M7;A0A2R8YCP1;A0A2R8YE60;A0A2R8Y687;A0A2R8Y4S2;A0A2R8Y7R8;Q5TBB1-2 Q5TBB1 RNASEH2B Ribonuclease H2 subunit B 0 58.997 0.03943 75067000.0 45869.0 123710.0 109500.0 168300.0 135430.0 70427.0 84888.0 66545.0 25441.0 64245.0 False True 45622.04640052498 127827.61256572575 124916.64820893784 189606.76274381237 152676.20774350024 65558.54725732555 80781.64313634881 71510.92580866312 19171.40644193436 60144.82909708823 0.758536470805828 2.1253300488954956 2.0769308032664338 3.152503142668199 2.5384760425047364 1.0900113649254581 1.3431186745239194 1.1889787847468527 0.3187540264016229 1.0 15.876153087746083 2.723825670416162 21.598986059716253 1.0449834068535127 2.183893969166839 0.4627252212519657 0.6124970910205305 128.14966225082821 187844.72130644845 0.20614922574173272 0.19552530221094483 529.4508750430178 -2.723825670416162 1.1389105623133264 FQPQLNPDVVAPLPTHTAHEDFTFGES(ph)RPELGSEGLGSAAHGSQPDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGSAAHGSQPDLR 48 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 FQPQLNPDVVAPLPT(0.079)HT(0.079)AHEDFT(0.079)FGES(0.191)RPELGS(0.191)EGLGS(0.191)AAHGS(0.191)QPDLR;FQPQLNPDVVAPLPT(0.09)HT(0.09)AHEDFT(0.09)FGES(0.183)RPELGS(0.183)EGLGS(0.183)AAHGS(0.183)QPDLR 77.847 7.8568e-05 2747610000.0 64856.0 80849.0 77525.0 74858.0 80653.0 87766.0 74428.0 36220.0 70606.0 64353.0 True False 64506.82250217899 83540.0100907475 88439.84614062024 84335.0151246364 90923.68148221604 81698.94299894126 70827.63329742926 38922.920321433296 53206.097371927826 60245.93644462481 1.070724870572318 1.3866497065330454 1.467980271531009 1.3998457008325054 1.5092085350152828 1.3560905153169132 1.1756416694183291 0.6460671477355056 0.8831483169131636 1.0 15.878576315184265 1.9552880764517941 4.070425233716694 0.8159389318928499 1.3743797159195823 0.7396232180228726 0.13786874450599296 0.10156012274747266 3.431914160505794 0.06373074751213434 0.0379503649612826 90.21693666498696 -1.9552880764517941 0.5584407840267324 FQPQLNPDVVAPLPTHTAHEDFTFGES(ph)RPELGSEGLGSAAHGSQPDLRR ddPTM_BT-474_Trastuzumab_2h_R1 3 FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGSAAHGSQPDLRR 49 2 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 FQPQLNPDVVAPLPT(0.022)HT(0.022)AHEDFT(0.071)FGES(0.272)RPELGS(0.239)EGLGS(0.186)AAHGS(0.186)QPDLRR;FQPQLNPDVVAPLPT(0.015)HT(0.015)AHEDFT(0.015)FGES(0.239)RPELGS(0.239)EGLGS(0.239)AAHGS(0.239)QPDLRR;FQPQLNPDVVAPLPTHTAHEDFT(0.013)FGES(0.247)RPELGS(0.247)EGLGS(0.247)AAHGS(0.247)QPDLRR 175.79 1.0639e-22 3174770000.0 190389.3 220649.2 226163.4 287576.5 254271.8 225867.4 251138.2 123901.6 295504.0 206030.0 True False 189364.26516303988 227993.37523674197 258005.24087248673 323983.6554141169 286651.80654296506 210253.71827266904 238989.68582491076 133147.76655157647 222680.99875073196 192880.98900884282 0.9817673900166402 1.182041716025675 1.3376395579382798 1.6797075599776377 1.4861589419257033 1.0900696815849993 1.2390525735740294 0.6903104719432571 1.1544994656810004 1.0 17.55735142801423 1.9057595174783928 6.906148469103637 0.9217828706229871 1.3041675684302676 0.34375488228129614 0.21307698994051386 0.27618729473209175 17.354722291943705 0.09803939525532349 0.06056791159072581 80.49326012606097 -1.9057595174783928 0.38238469780728046 FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGS(ph)AAHGSQPDLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGSAAHGSQPDLRR 49 2 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 FQPQLNPDVVAPLPTHTAHEDFT(0.003)FGES(0.08)RPELGS(0.08)EGLGS(0.418)AAHGS(0.418)QPDLRR 148.83 1.2329e-15 1470800000.0 110440.0 135390.0 139210.0 155650.0 174020.0 139510.0 153720.0 78668.0 161150.0 125960.0 True False 109845.40331103753 139896.37430501662 158809.5579649885 175355.27404084592 196180.41550265026 129866.00207121536 146283.97633257395 84538.60562800981 121436.74179936788 117921.12496021844 0.9315159039408307 1.1863554927262752 1.3467439190269264 1.4870556407938214 1.6636579371917726 1.1012954813230167 1.240523921239082 0.7169080659341533 1.0298132912176292 1.0 16.847462667269294 1.871732862183051 5.899563044166653 0.8958286205286737 1.2994803352210733 0.39815421288120556 0.20468731454961717 0.225781153222382 9.694868961603845 0.09633797699977525 0.057944396582193566 74.42740245008369 -1.871732862183051 0.4036517146923996 FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGSAAHGS(ph)QPDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGSAAHGSQPDLR 48 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 FQPQLNPDVVAPLPT(0.008)HT(0.008)AHEDFT(0.086)FGES(0.086)RPELGS(0.077)EGLGS(0.077)AAHGS(0.658)QPDLR;FQPQLNPDVVAPLPT(0.005)HT(0.005)AHEDFT(0.04)FGES(0.116)RPELGS(0.102)EGLGS(0.102)AAHGS(0.628)QPDLR;FQPQLNPDVVAPLPTHTAHEDFTFGESRPELGS(0.004)EGLGS(0.003)AAHGS(0.992)QPDLR 167.52 1.1942e-21 5020700000.0 208860.0 213621.0 201579.0 224233.0 231231.0 228795.0 221470.0 115809.0 215745.0 216686.0 True False 207735.52096652746 220731.24584837834 229959.57104392245 252620.87480887273 260676.89723648643 212978.9401754981 210756.65000244047 124451.25564618639 162577.53558488766 202856.91396578192 1.0240494982663912 1.0881130030678248 1.1336047983196285 1.2453155767295416 1.2850284081540235 1.0498973686024997 1.0389424046842746 0.6134927975251508 0.8014394599945033 1.0 17.630102949148412 1.9326539570612669 4.816268612752886 0.7701736782698982 1.1405362552760947 0.6152188554989244 0.11647916722616124 0.12823088887201164 5.618321168802079 0.05371973998621558 0.032080572814357396 85.6355235192605 -1.9326539570612669 0.37036257700619646 FQPVHDLTIGVEFGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQPVHDLTIGVEFGAR 16 0 P61019;E9PKL7;A0A3B3ITL1;Q8WUD1;E9PE37;H0YD31 P61019 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B 0 ; 167.05 6.4609e-09 2027920000.0 1002080.0 1290300.0 1208740.0 1162290.0 1294170.0 1240720.0 1249350.0 1069750.0 1246440.0 1121700.0 False True 996684.9126215545 1333246.8554971777 1378920.0854435766 1309435.7948277218 1458974.8783534362 1154951.9467407241 1188914.1675195256 1149580.1770804343 939271.5634403004 1050112.145664316 0.9491223549186143 1.269623307378991 1.3131169762551904 1.2469485285301163 1.3893514939116032 1.09983676649134 1.132178284413044 1.094721341741261 0.8944488141750839 1.0 20.002111976600574 1.7443803520456327 1.2482345924094287 0.9562166611665441 1.231538532479657 0.42299355321179455 0.11778320776032827 0.41209201740978874 1.2075097491394073 0.0967764129435994 0.03780164205263142 55.51116630121647 -1.7443803520456327 0.2753218713131129 FQQDDAHIFCAMEQIEDEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQQDDAHIFCAMEQIEDEIK 20 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ; 197.72 1.6265e-21 336890000.0 290790.0 222519.0 196322.0 154435.0 202498.0 225155.0 185909.0 221838.0 319700.0 226320.0 False True 289224.418949806 229925.41039942426 223962.43113858582 173986.45516542267 228284.92000031992 209590.56480786 176915.87142865267 238392.67803053898 240914.2187605208 211876.0638376995 1.3650641498199467 1.0851882286030707 1.057044514996015 0.8211708864796502 1.0774455399322023 0.9892130380919751 0.8349969705127857 1.1251515329884154 1.1370525504243132 1.0 17.692861086530137 4.7909623918945154 1.9601264659658766 1.0023805369482528 1.5056030747000255 0.5337667935130123 0.10111869542526777 0.711972963933507 2.606168853068972 0.02622328664581635 0.6762442657981951 61796.28847919952 -4.7909623918945154 0.5032225377517727 FQRPGDPQSAQDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQRPGDPQSAQDK 13 1 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;H7C561;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 0 ; 85.837 0.0083011 875230000.0 1012900.0 996710.0 806160.0 722430.0 684490.0 1018810.0 910350.0 947720.0 1355210.0 949820.0 False True 1007446.6589437686 1029884.8898260808 919660.3207316663 813889.5639275828 771655.7442099125 948382.0627207733 866312.8926252843 1018443.6788246498 1021236.6543836268 889201.6744181865 1.1329788145112873 1.1582129447742489 1.0342539237045512 0.9153036789546295 0.867807344958965 1.0665545173892177 0.9742591782591068 1.1453461100273203 1.1484871022671341 1.0 19.762151139482484 4.204901029230817 6.446017787788919 1.0205630871253728 1.1458742599241392 0.2643830033966911 0.0845412020247223 0.24183754693387605 29.490295866644257 0.023648814459735133 0.053984755935403736 16028.800709417108 -4.204901029230817 0.12531117279876636 FQS(ph)VESGANNVVFIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FQSVESGANNVVFIR 15 0 Q9NXG2;H3BNW0 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 1 FQS(0.998)VES(0.002)GANNVVFIR;FQS(0.97)VES(0.03)GANNVVFIR 206.63 3.985000000000001e-09 410263000.0 219277.0 246769.0 252486.0 258464.0 172185.0 226876.0 264033.0 206604.0 222889.0 287908.0 True False 218096.4369959649 254982.5569899892 288033.8341523462 291185.51589908893 194111.7391295473 211192.5961286583 251260.71508599084 222021.8395938543 167960.99250958307 269533.4649495598 0.8091627399097889 0.9460144662842009 1.0686384868990146 1.0803315868535324 0.7201767660497116 0.7835487002260764 0.9322060068979244 0.8237264327656055 0.6231545034343512 1.0 18.040104881809672 3.237140267160747 24.99999979853795 0.8131641400676464 0.9805067676655104 0.3059684262873421 0.11962370749960968 46.83504147955824 824362.3217910428 0.034252507551120824 0.04309799241298969 1726.3953880860568 -3.237140267160747 0.167342627597864 FQSPQIQATIS(ph)PPLQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQSPQIQATISPPLQPK 17 0 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 1 FQSPQIQATIS(1)PPLQPK;FQSPQIQAT(0.006)IS(0.994)PPLQPK 232.51 1.2619e-16 735430000.0 878120.0 843420.0 817160.0 741810.0 742740.0 929670.0 915840.0 840610.0 1082770.0 918320.0 True False 873392.2994883031 871492.724841844 932209.0251179525 835723.0699405062 837323.5364351128 865404.1011077849 871537.3203514472 903340.5867310903 815935.8418746607 859712.0313866937 1.0159126167858132 1.013703069196494 1.0843270666042941 0.9720965153791161 0.9739581462929293 1.0066209027130981 1.0137549418096192 1.0507478710912361 0.9490804037702913 1.0 19.713493970923444 3.7158205584869752 24.99731514489201 1.0010329826829636 1.0355531522158417 0.26074067542696655 0.03190175629082304 1316.545541885133 1447229.8737976344 0.008938218965312272 0.013857745958253478 5197.81189304141 -3.7158205584869752 0.034520169532878064 FQSSHHPTDITSLDQYVER ddPTM_BT-474_Trastuzumab_2h_R1 7 FQSSHHPTDITSLDQYVER 19 0 P14625 P14625 HSP90B1 Endoplasmin 0 ;;;;;; 243.95 1.0043e-24 11071080000.0 1395888.0 3478750.0 4066540.0 4406920.0 4487240.0 4096390.0 4250800.0 2582890.0 3623870.0 3625230.0 False True 1388372.6941057362 3594538.0908012143 4639073.485000684 4964835.620148318 5058663.416044777 3813216.201164837 4045172.564367067 2775638.367449666 2730815.7958701584 3393864.7176844454 0.4090830983543123 1.0591282769967578 1.3668999417766468 1.4628855399798344 1.4905318381388475 1.1235616379448694 1.191907427331692 0.8178400137715033 0.8046330726268106 1.0 21.694497628307413 1.7490624352926325 6.922799252404055 0.8612382843939338 1.1855522937924132 0.16037275563005893 0.291618929491555 0.2428784350417654 34.83128171509264 0.1499133878581964 0.07982024026594248 56.11286395317514 -1.7490624352926325 0.32431400939847943 FQTMEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQTMEEK 7 0 P39023;G5E9G0 P39023 RPL3 60S ribosomal protein L3 0 ; 101.28 0.021339 862050000.0 485680.0 456960.0 430690.0 380540.0 397940.0 561650.0 497290.0 477100.0 714430.0 533460.0 False True 483065.15284412116 472169.6373618463 491327.40837541147 428716.324982355 448615.3002248288 522824.45748188795 473234.18286771857 512703.62466471153 538368.2993715327 499414.12608191604 0.9672636948296628 0.9454471003177011 0.9838075911669785 0.8584385234470423 0.8982831618007637 1.046875589170123 0.947578689013888 1.0266101775835945 1.077999742608857 1.0 18.92987710335232 2.738116795018805 24.999999508152378 1.015838115912684 0.9304118565116206 0.4912573361249367 0.04527832045136747 38.01448034726026 2141247.3259353694 0.01479869257448782 0.014744196187911009 547.1630919364067 -2.738116795018805 -0.0854262594010633 FQVPTAHSEMQPLDPAAASIS(ph)DGDCDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FQVPTAHSEMQPLDPAAASISDGDCDAR 28 0 Q5T586;A0A0A0MRW2;Q5T593;A0A0A0MRW3;Q8IW50-5;Q8IW50-6;Q8IW50;A0A0A0MRV9;Q8IW50-7 Q5T586 FAM219A Protein FAM219A 1 FQVPTAHSEMQPLDPAAAS(0.248)IS(0.752)DGDCDAR 115.37 0.00023166 67249000.0 34037.0 40483.0 39180.0 39141.0 44103.0 50738.0 37314.0 35257.0 47274.0 39924.0 True False 33853.74857386619 41830.4521825097 44696.20344133507 44096.24658678287 49719.25563103886 47230.601484404906 35508.9792666775 37888.05637141838 35623.95613914565 37376.01613934393 0.9057612894764883 1.1191789950688942 1.195852529459006 1.1798006085609773 1.3302449208518454 1.2636606669988975 0.9500471942834731 1.013699700635977 0.9531234149282709 1.0 15.189825181850544 2.227673930767827 24.99999999993249 0.9828488061837737 1.173117006724694 0.4281173857607773 0.10537686184999329 218.7940769529243 502431.49879739125 0.041865929221633215 0.031223489719777654 168.91722212866165 -2.227673930767827 0.19026820054092042 FQVWDYEEGEVEALLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FQVWDYEEGEVEALLDR 17 0 O43598;H0Y8X4 O43598 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 0 ;;; 242.41 4.8723e-20 552258000.0 161795.0 163471.0 159535.0 155631.0 148007.0 152338.0 174947.0 169730.0 193460.0 168533.0 False True 160923.9136971144 168912.03341469364 181996.1412969215 175333.8686427941 166854.814143781 141807.23262507954 166484.14524755935 182396.11447147658 145784.37523118657 157777.07965163953 1.0199448110740978 1.0705739628825637 1.1535017741408062 1.111275915550717 1.0575351915004667 0.8987822118281041 1.0551858711996978 1.1560368266049423 0.9239895652338603 1.0 17.267528114042726 3.0014445767447917 24.767619766461223 1.0265585916119766 1.0911735319030094 0.19329980475295228 0.07411038401528423 93.05957280480575 1595466.3623095027 0.02336094372233318 0.027722806371402103 1003.3317990226936 -3.0014445767447917 0.06461494029103276 FQWDLNAWTK ddPTM_BT-474_Trastuzumab_2h_R1 2 FQWDLNAWTK 10 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 187.42 0.00037783 369830000.0 1007600.0 1117440.0 1169040.0 963630.0 808170.0 1037390.0 1128080.0 999650.0 1554540.0 1086340.0 False True 1002175.1935548837 1154633.3148932543 1333630.670522163 1085625.4591967913 911085.6591011193 965677.671053388 1073510.4607159125 1074248.9591198447 1171444.4467687847 1017008.8511375333 0.9854144262696848 1.1353227787563371 1.311326513068677 1.0674690372483089 0.8958483085786932 0.9495273025139055 1.055556654708739 1.0562828021784547 1.1518527547312039 1.0 19.955900804504502 3.486685273847073 24.955974348937538 1.0193370854743815 1.15085912854459 0.2512385754781691 0.09700369149642037 613.7819471405735 1601578.3121269564 0.027574986563789934 0.03953422372157456 3066.7987237127822 -3.486685273847073 0.13152204307020843 FRADNLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 FRADNLNK 8 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 130.75 0.00094357 376690000.0 479640.0 500930.0 527600.0 387690.0 346500.0 464640.0 542590.0 419640.0 786790.0 509820.0 False True 477057.6715330142 517603.1522314207 601881.4940185912 436771.5142492485 390624.7211335952 432520.5304449111 516342.8488049143 450955.66768874275 592896.1469458556 477282.851121138 0.9995282051563452 1.084478838943344 1.2610582856785464 0.9151209041415832 0.8184344361336622 0.9062142698588894 1.0818382592042104 0.944839452390647 1.2422322435284272 1.0 18.86448497540486 3.7120334569904374 24.977772758914703 0.9782901325881288 1.1119675527908683 0.1819727047001738 0.12342744925120995 1172.0644488633382 1103607.1730813268 0.033461680923240734 0.05185681156367889 5152.683380721346 -3.7120334569904374 0.13367742020273954 FRAESVVPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 FRAESVVPAR 10 1 P53602;H3BP35 P53602 MVD Diphosphomevalonate decarboxylase 0 ; 141.71 0.0034961 0.0 219640.0 257180.0 259210.0 241340.0 212760.0 226940.0 260250.0 190700.0 338110.0 256070.0 False True 218457.48264429785 265740.0808314073 295704.5149062907 271893.61925485247 239853.72487268026 211252.17195929788 247660.71324845447 204931.00235497876 254787.3209418819 239727.39336744318 0.9112745922592844 1.1085094494148737 1.233503233621067 1.1341783491472182 1.0005269798476617 0.8812183246638827 1.0330930886519567 0.8548501674185808 1.062821054210336 1.0 17.871035247909923 3.098991039208986 4.718303487836421 0.9533972616278027 1.1066247544717522 0.2891072523368612 0.09522482744730294 0.23326544881579858 8.86274500857047 0.028029160436978645 0.03381431631346187 1256.0040483163257 -3.098991039208986 0.15322749284394954 FRDGPPLR ddPTM_BT-474_Trastuzumab_2h_R1 8 FRDGPPLR 8 1 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ;;;;;;; 132.84 0.00086181 6394470000.0 2026070.0 2856360.0 2631700.0 2725930.0 2610270.0 2509250.0 2599820.0 2275810.0 2854950.0 2572060.0 False True 2015161.8642375409 2951432.215893917 3002220.484853537 3071032.4585041 2942672.412217578 2335791.453639147 2474056.774323136 2445642.498529018 2151385.82687003 2407908.92874865 0.836892890830712 1.225724187761423 1.2468164592976283 1.2753939411238713 1.2220862579494796 0.9700497497025432 1.027471074501502 1.0156706797877018 0.8934664435120763 1.0 21.199349397249314 2.7334299651652207 24.773606124102354 0.988908723123282 1.1760375464127526 0.35264222359343944 0.12094662541962878 424.5763172467345 2050082.701121198 0.038925069587251476 0.03771094668890451 541.2899517950716 -2.7334299651652207 0.18712882328947056 FRDPSSVGVAQHLTNTVFIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FRDPSSVGVAQHLTNTVFIDR 21 1 Q8WXA9-2;A0A087WY03;E5RFV3 Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 0 ; 179.58 3.422e-17 664660000.0 270550.0 319780.0 335700.0 323440.0 347380.0 377580.0 363450.0 270820.0 370770.0 335390.0 False True 269093.3888609307 330423.68398890825 382963.64204329246 364387.4708369498 391616.7839174267 351478.7833277155 345868.5349861698 291029.96359609533 279398.70156346034 313985.1230581747 0.8570259196996205 1.0523545853721479 1.2196872205704394 1.160524636606546 1.2472463029557888 1.119412218975082 1.1015443394816122 0.9268909327980286 0.8898469419256332 1.0 18.26033667878093 1.7600048161598894 4.486965340172261 0.9303141889234164 1.11947142883826 0.35406673261222055 0.10398032666581826 0.2071338669073448 8.926670654095677 0.05619750853515001 0.029153127458873232 57.544631878160864 -1.7600048161598894 0.18915723991484346 FRDQDLAS(ph)CDRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FRDQDLASCDRDR 13 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 FRDQDLAS(1)CDRDR 130.39 0.00011229 1192100000.0 550320.0 620330.0 589240.0 633900.0 617650.0 654000.0 598390.0 579950.0 527130.0 700220.0 True False 547357.1382663002 640977.3090525962 672199.8702341061 714151.6750047682 696304.0664016316 608790.5193504039 569443.5896282139 623228.8139264281 397225.8746801174 655531.3601114966 0.8349823846309999 0.9777980857293769 1.0254274793501479 1.089424119821363 1.062197949283769 0.928697780754314 0.8686748251546037 0.9507231108217701 0.6059601398971285 1.0 19.322305273945815 2.4432822497338234 3.361102004848316 0.8632798841064567 1.0034765131424574 0.24764065293500648 0.11546765312051825 0.35590291836882304 8.416873738553154 0.04181442618548997 0.03533416732835412 277.5123082381018 -2.4432822497338234 0.14019662903600072 FRDQDLASCDR ddPTM_BT-474_Trastuzumab_2h_R1 6 FRDQDLASCDR 11 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ;;;;; 256.43 1.5557e-20 7649140000.0 3324060.0 3861960.0 3597250.0 3569450.0 3242280.0 3464550.0 3737170.0 3016780.0 4367730.0 3576780.0 False True 3306163.630297785 3990503.0039958837 4103711.532142487 4021342.0040160473 3655165.139500818 3225053.813173459 3556388.8097242084 3241907.442498438 3291361.466083482 3348506.8381645815 0.9873546001506731 1.1917261026658676 1.2255347623515251 1.2009358792948643 1.0915806107489765 0.9631319179091804 1.0620819910505463 0.9681650954236743 0.9829340733518039 1.0 21.675086483581815 2.9544623283171907 4.141628704893449 0.9976061153941311 1.1591045139384473 0.5559871816859622 0.06586767544610786 0.16071450665256012 5.862707217736655 0.02046713665163423 0.022646317574523952 900.4556518089338 -2.9544623283171907 0.16149839854431614 FRDQDLASCDRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FRDQDLASCDRDR 13 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ;;; 254.1 4.7493999999999996e-24 3385280000.0 558940.0 839700.0 826440.0 882360.0 810150.0 724730.0 816520.0 687810.0 1058780.0 872280.0 False True 555930.7291440718 867648.9068906305 942795.5684547459 994066.6855295901 913317.8003647408 674631.1209309156 777021.8081906923 739137.8748284115 797857.8559251316 816610.3436035193 0.6807784563331314 1.0625005104171097 1.1545231772284434 1.2173084670260184 1.1184254614440383 0.8261358997167718 0.951520898892694 0.9051292095649449 0.9770361864440302 1.0 19.639288316027542 2.750358236359651 24.866775345933398 0.9260872724375836 1.0630522434484257 0.13542824828120714 0.14159694340874168 1264.1710901093554 2664592.1303214775 0.04464238530391446 0.047007156977487925 562.8053748753508 -2.750358236359651 0.13696497101084215 FRDSILR ddPTM_BT-474_Trastuzumab_2h_R1 2 FRDSILR 7 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 125.58 0.00368 948850000.0 551380.0 703110.0 597570.0 658690.0 651830.0 710470.0 716680.0 582050.0 935000.0 736400.0 False True 548411.4313440766 726512.5913110299 681702.6618284481 742080.0864629927 734836.6868008986 661356.8811664861 682011.4504165312 625485.5265900119 704581.7783581079 689402.3215362409 0.7954882282989926 1.053829626932636 0.9888313986372498 1.0764107739140862 1.0659039922630567 0.9593191965074047 0.9892793063080494 0.9072866554847119 1.0220182850386137 1.0 19.394986631371154 -3.1232951356805363 8.769912957642502 0.9999600444709426 0.9860929730670139 0.0 0.07992151329557429 0.0 0.0 0.0 0.017211031645101543 0.000752843776031386 3.1232951356805363 -0.013867071403928621 FRDYEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FRDYEEK 7 1 Q9UJC3;Q9UJC3-2 Q9UJC3 HOOK1 Protein Hook homolog 1 0 107.01 0.018339 0.0 160950.0 152580.0 149170.0 129830.0 129630.0 180570.0 192130.0 152270.0 247050.0 181460.0 False True 160083.46308322615 157658.53306344245 170171.83939111658 146266.46468823022 146137.6121227935 168087.62091605883 182835.93789212493 163633.1606113928 186167.83780039637 169879.06744427813 0.9423377788186585 0.9280633301990304 1.0017234139040379 0.8610034590412792 0.860244963204357 0.989454577569971 1.0762711418350397 0.9632332168591988 1.0958845053788697 1.0 17.37414856854317 2.5032580893851657 10.43764997439808 1.0261460679875276 0.9209900812766536 0.5288853544716938 0.05131253258450179 0.5240734827038005 206.93112906248518 0.016930319360342345 0.01563556022063679 318.6090365987785 -2.5032580893851657 -0.105155986710874 FREDHNCK ddPTM_BT-474_Trastuzumab_2h_R1 1 FREDHNCK 8 1 Q86SF2;H0YAK0;H0YAH3 Q86SF2 GALNT7 N-acetylgalactosaminyltransferase 7;Polypeptide N-acetylgalactosaminyltransferase 0 80.455 0.015265 58726000.0 127360.0 149680.0 152690.0 146200.0 130140.0 128820.0 160100.0 111160.0 196980.0 143970.0 False True 126674.30791102626 154662.0083165294 174187.4247947284 164708.9050097763 146712.55759978667 119914.97660966234 152355.35135860706 119455.32365904273 148436.9183967703 134781.71134108183 0.9398478966516549 1.1474999595838193 1.292366917303235 1.2220419474639255 1.0885197712656456 0.8896976853647646 1.1303859391802271 0.8862873343160499 1.101313501066419 1.0 17.040265223571236 2.9938299765538057 18.705327056648407 0.9956281699779282 1.159731783619608 0.28630196424856513 0.11067882402662356 12.161459249523057 36875.02498375694 0.03240111100407562 0.037232843417310924 985.893439242334 -2.9938299765538057 0.1641036136416797 FREDHPDLIQNAK ddPTM_BT-474_Trastuzumab_2h_R1 3 FREDHPDLIQNAK 13 1 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 ;; 139.46 2.3362e-05 1426120000.0 1065410.0 1206510.0 1144950.0 1064320.0 1079700.0 1436230.0 1262870.0 1202730.0 1761660.0 1404750.0 False True 1059673.9509381785 1246667.9559993036 1306149.0079161979 1199062.8028728126 1217193.3951167194 1336946.80062176 1201780.1534681097 1292483.8199391908 1327522.4980345943 1315097.6523330172 0.8057758669542825 0.9479660721678596 0.9931954525194808 0.9117671229551997 0.9255536217841974 1.016614088124925 0.913833395821307 0.9828044462297466 1.0094478502638455 1.0 20.32673849987281 4.73171257311042 4.093985196953567 0.9650412662494203 0.7932248555655036 0.6274932628392585 0.03741535284203687 0.13741370422591986 5.025279500427413 0.008714312557996977 0.06905649847360831 53915.36790968766 -4.73171257311042 -0.17181641068391673 FRELAEEAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FRELAEEAAR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 114.71 0.0012033 316360000.0 90224.0 128430.0 116300.0 123380.0 107900.0 122970.0 151120.0 120400.0 218410.0 149200.0 False True 89738.24400882877 132704.7149124254 132674.02910227844 138999.89534956377 121640.42542659442 114469.37334024347 143809.74826553842 129384.85937881185 164585.78204405832 139677.92826345365 0.6424654569587323 0.9500764835380741 0.94985679378087 0.9951457404736773 0.8708636141650256 0.8195237054514223 1.0295810515909969 0.9263085513036281 1.1783234766599966 1.0 17.091744540276487 4.739384366522313 5.3836092588503766 0.9611925513831903 0.629841873241546 0.5317876568708055 0.09168270857982277 0.11983218784801619 12.816835431390576 0.02141736980994738 0.146752089391428 54876.24249084381 -4.739384366522313 -0.3313506781416443 FRGPFTDVVTTNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FRGPFTDVVTTNLK 14 1 O95292;E5RK64;O95292-2 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 0 ; 167.88 3.2629e-06 1067450000.0 1084700.0 1461950.0 1465330.0 1308930.0 1248140.0 1470100.0 1593280.0 1291340.0 1874820.0 1487310.0 False True 1078860.0957214988 1510610.1219825635 1671635.7271233143 1474640.4037923827 1407083.230694621 1368475.4472431634 1516206.9594793376 1387706.3480916522 1412795.732300906 1392388.6024498453 0.7748268650169162 1.0849055495891828 1.2005525786279392 1.0590724465841066 1.0105535395929852 0.982825803683966 1.088925144037835 0.99663725029783 1.014656202884134 1.0 20.409130479207697 1.60949620173763 24.999985504308025 1.0042329696119767 1.0367315168802707 0.008301598998477822 0.10234794951442402 0.9236540175604173 13765.232350185315 0.05068578413121609 0.026236785747544573 40.6907975048787 -1.60949620173763 0.03249854726829393 FRGTEPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FRGTEPEPR 9 1 P25325-2;P25325;B1AH49 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase 0 86.18 0.013053 287150000.0 367590.0 533290.0 449560.0 471500.0 537530.0 498800.0 469970.0 444960.0 650540.0 529740.0 False True 365610.9362830885 551040.2352693874 512854.1403544301 531191.8516560156 605981.2593100773 464319.1300489022 447235.7556402538 478165.17466109764 490223.1337893944 495931.5396667682 0.7372205779224161 1.111121578675251 1.0341228563503597 1.071099152138902 1.2219050631812103 0.9362565050024699 0.9018094633399709 0.9641757710799995 0.988489528451428 1.0 18.919781453516592 -0.5250517171967541 7.657014540172325 1.00001710908483 1.0010048601391468 0.0 0.12331254690976311 0.0 0.0 0.11767823617401195 0.027737026265571983 0.29850271310310045 0.5250517171967541 0.00098775105431681 FRIDELEPR ddPTM_BT-474_Trastuzumab_2h_R1 8 FRIDELEPR 9 1 Q14697;F5H6X6;Q14697-2 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;;;;; 169.76 5.3098e-05 5864113000.0 2470359.0 3531401.0 3096823.0 3167050.0 3171078.0 3154038.0 3389442.0 2971094.0 3507926.0 2965033.0 False True 2457058.8616266875 3648941.547508018 3532828.7603319464 3567998.205275049 3574895.9868481364 2936006.7768668383 3225481.741534171 3192812.1211896357 2643444.641100151 2775802.0554475333 0.8851707767867274 1.3145539467942038 1.272723591150436 1.285393603003076 1.287878571828411 1.0577147499062125 1.1619999110542258 1.1502304766017868 0.9523174161184765 1.0 21.404473261229466 1.3409335218475034 3.3102611620606877 0.9736643929019483 1.1912341289968913 0.29122526266402826 0.12433505701162524 0.2905941823762772 5.190620603881017 0.10052374194773947 0.0316859047749356 21.924693048724443 -1.3409335218475034 0.217569736094943 FRKVQHELDEAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 FRKVQHELDEAEER 14 2 P13533;P12883 P13533 MYH6;MYH7 Myosin-6;Myosin-7 0 ; 54.524 0.07872699999999999 966130000.0 98149.0 405480.0 380760.0 559410.0 476530.0 256890.0 300050.0 178648.0 87147.0 271660.0 False True 97620.57668937904 418976.1566821643 434367.6983747505 630231.2486424004 537213.2708854039 239131.79895401455 285535.4351976893 191979.62091616285 65670.78955997223 254322.4262201729 0.38384572741086787 1.647421200360234 1.7079409976952178 2.4780797274118265 2.112331495376368 0.9402702015236066 1.1227300692330395 0.7548670550585326 0.258218634258858 1.0 17.956299159312202 2.611214190672031 5.490836599264544 0.8052738455799285 1.709860452690363 0.3797386536530496 0.5440598583720758 0.2545202610417177 10.34738898375782 0.1874260393152234 0.1759119800858472 408.5208159566159 -2.611214190672031 0.9045866071104344 FRNS(ph)VEGLNQEIEIIIK ddPTM_BT-474_Trastuzumab_2h_R1 4 FRNSVEGLNQEIEIIIK 17 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 FRNS(1)VEGLNQEIEIIIK;FRNS(1)VEGLNQEIEIIIK;FRNS(1)VEGLNQEIEIIIK;FRNS(1)VEGLNQEIEIIIK 261.07 1.7191e-27 422907000.0 705390.0 673270.0 612190.0 603270.0 666920.0 774650.0 755210.0 709890.0 943350.0 782900.0 True False 701592.2586161974 695679.3849496905 698381.0307491294 679643.9201453333 751848.3088554625 721100.2688299556 718677.6071176381 762865.5965483794 710874.0327423754 732934.6517255873 0.957237124707368 0.9491697292682442 0.9528557956768635 0.9272912919933738 1.025805379900303 0.9838534269490883 0.9805480003239264 1.0408371261371312 0.9699009742119936 1.0 19.483325048192643 3.2405202999494223 24.999999801039092 1.002709226712147 0.9472633796729346 0.6055795435578637 0.021096980420664796 34.10203397304209 435040.94544340065 0.005931342147380944 0.007642843658022339 1739.8840224245755 -3.2405202999494223 -0.05544584703921229 FRPAGAAPRPPPKPM ddPTM_BT-474_Trastuzumab_2h_R1 2 FRPAGAAPRPPPKPM 15 3 P62854;Q5JNZ5 P62854 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 0 ; 124.07 0.00012091 1810910000.0 1073300.0 1187520.0 1183910.0 1133970.0 1106290.0 1339190.0 1337700.0 1211470.0 1580380.0 1345970.0 False True 1067521.4720548405 1227045.8853290023 1350594.2372698062 1277530.4857314362 1247169.4740054403 1246614.947414172 1272990.340489749 1301876.04312001 1190916.525007043 1260069.0422571092 0.8471928412292661 0.9737925813422462 1.0718414562828582 1.0138575291422516 0.989762808370752 0.9893227320156701 1.0102544367009403 1.0331783413931142 0.9451200569722782 1.0 20.265071353996223 4.695328777915189 3.641082965804561 1.0089883929610957 0.8359050786364951 0.7001432776312355 0.03109587100288997 0.12307053776498265 2.931248590404607 0.007401808810714222 0.053337965850512425 49582.540799354814 -4.695328777915189 -0.17308331432460056 FRPAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 FRPAIK 6 1 Q96CN7;D6RGE2 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 0 ; 81.71600000000002 0.055765 871180000.0 1187360.0 1306720.0 1221320.0 1090260.0 1063290.0 1305960.0 1335950.0 1133890.0 1550660.0 1294810.0 False True 1180967.3856880974 1350213.3852710777 1393271.2400962564 1228286.804213124 1198693.6788864105 1215682.059099167 1271324.9946753993 1218506.6295767522 1168520.6207794477 1212174.1172573876 0.9742555701157048 1.1138774257332038 1.1493986055803693 1.0132923865691774 0.9888791237339094 1.0028939257090526 1.0487973440250018 1.0052240946487887 0.9639874372365677 1.0 20.209165512410447 3.56253448003016 10.83877254347976 1.00502855317331 1.0825892213627304 0.3648643020496024 0.04590161481973962 0.6655432618822489 82.05302644349551 0.012143031915297899 0.018812936512428203 3652.031207495463 -3.56253448003016 0.07756066818942031 FRPDMEEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 7 FRPDMEEEEAK 11 1 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 0 ;;;;;; 234.63 1.5273e-15 9119110000.0 6412930.0 5280430.0 4764360.0 4551140.0 4694960.0 6030930.0 6169630.0 5477030.0 8358120.0 5881830.0 False True 6378403.497423497 5456185.920462656 5435140.475440504 5127313.857361099 5292835.326791878 5614026.004382159 5871181.426624637 5885753.790394804 6298373.319070015 5506446.573711994 1.158352017410695 0.9908723979109714 0.9870504331029183 0.9311474811794432 0.9612070608403057 1.0195369970869694 1.0662377902028328 1.0688842090094253 1.1438181111460723 1.0 22.39269018680465 2.278953957739907 3.261702979181176 1.0760303353718375 0.999029084386391 0.17512573611804128 0.0649047245324178 0.3745512920957401 8.229042663232606 0.025449794939679842 0.01952682335545784 190.08767454699836 -2.278953957739907 -0.07700125098544641 FRPLNESEVNRGDK ddPTM_BT-474_Trastuzumab_2h_R1 3 FRPLNESEVNRGDK 14 2 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 142.1 5.339400000000002e-06 1026250000.0 578360.0 618350.0 558700.0 604100.0 541080.0 683200.0 668860.0 607610.0 918130.0 684080.0 False True 575246.1740218372 638931.4059495323 637360.1036925446 680578.998060231 609983.3307675787 635971.9920798105 636504.6865066707 652952.9435810623 691869.1638116902 640421.4287296459 0.8982306778255503 0.9976733714500009 0.9952198272890809 1.062704911998717 0.9524717684377849 0.9930523301528785 0.993884117477542 1.0195676070306925 1.0803341874179586 1.0 19.28866205618975 4.8156729783824535 2.385976927158555 1.011269255924929 0.8566183292905813 0.49051653277850393 0.0345970639498493 0.6601931270363147 3.7867511948172945 0.00855967068476669 0.2272740402439854 65414.34217781524 -4.8156729783824535 -0.15465092663434765 FRPMDNLSGGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FRPMDNLSGGEK 12 1 G8JLG1;Q14683;V9GY57 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 120.87 0.00035232 402050000.0 508480.0 495720.0 480320.0 405470.0 414980.0 495890.0 513990.0 441150.0 655430.0 522300.0 False True 505742.4001774389 512219.7405309314 547944.8809837177 456802.4604262241 467825.2432208356 461610.29149949877 489126.3400675238 474070.85311431024 493908.0588120373 488966.3668364723 1.0343091764153527 1.0475561823298898 1.1206187544734951 0.9342206159938093 0.9567636445990833 0.944053257662766 1.0003271661240967 0.9695367314964147 1.0101064046746955 1.0 18.899375708393503 3.7320204637684906 24.999944737068365 0.9719297281776453 1.0655008528521497 0.6531863178705783 0.03133615253486319 299.4943804514948 1144826.0636032426 0.008261080391872871 0.013155899546295145 5395.360446216739 -3.7320204637684906 0.09357112467450435 FRQDLMNIAGTTLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 FRQDLMNIAGTTLSSK 16 1 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 115.73 0.0004405 436650000.0 235890.0 263960.0 230150.0 240020.0 202990.0 299240.0 302610.0 222140.0 317580.0 287930.0 False True 234619.9944498429 272745.7490328102 262553.11950033833 270406.5073901952 228839.57328400755 278554.2431351912 287971.59821754013 238717.21480406393 239316.66435397635 269554.06089072477 0.8704005188219224 1.0118406234784174 0.974027690893425 1.0031624324139417 0.848956133429492 1.0333891547199323 1.0683259501487596 0.8856005137345645 0.8878243702327066 1.0 18.040215118685026 -0.47582519248973676 0.0037899308930244183 1.2358511455807812 0.6894237441340698 0.006152888716141169 0.07362633776177135 771827.8814679907 683.7891479044085 50191.44392315773 48401.31579103389 0.33432958366909116 0.47582519248973676 -0.5464274014467114 FRQS(ph)LPLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FRQSLPLSR 9 1 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 FRQS(0.98)LPLS(0.02)R;FRQS(1)LPLSR 205.02 9.4604e-06 2498840000.0 1080140.0 756610.0 650900.0 1005540.0 613030.0 655700.0 637680.0 690230.0 874110.0 852020.0 True False 1074324.6462548363 781793.3064695974 742541.0622757783 1132841.2608996606 691095.7367865164 610373.0023517736 606832.9822258384 741738.4675169215 658697.3029739099 797643.3541489781 1.3468734374412925 0.9801289039807879 0.9309186347675527 1.420235315704864 0.8664219831980678 0.7652204449230231 0.7607823459812822 0.929912427225445 0.8258042890317658 1.0 19.605384300817736 3.046238045056596 24.89448976257314 0.8471376867868424 1.1395114361093786 0.49289022909966196 0.15347963454833596 103.98414969718847 55984.19397633645 0.0433550168973372 0.051819163048924144 1112.3412555946236 -3.046238045056596 0.2923737493225361 FRQSLPLS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 FRQSLPLSR 9 1 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 FRQS(0.003)LPLS(0.997)R 112.89 0.0025946 0.0 624580.0 832340.0 724390.0 830590.0 726950.0 598120.0 552380.0 573810.0 487950.0 650900.0 True False 621217.3306773615 860043.9337398446 826377.8154892477 935742.6088376882 819522.7735297757 556773.3722230335 525659.2691034817 616630.6159481406 367701.26069501473 609359.0047364737 1.0194603277357264 1.4113911947716 1.3561427812929867 1.5356179223811814 1.3448931863806468 0.9137033635267576 0.8626429822446142 1.0119332136805161 0.6034230360705551 1.0 19.216932918910143 2.730476696003974 5.796933439529869 0.8869112011917124 1.3516196439955468 0.6674658833678524 0.16041396172607017 0.09695274670855206 13.302016244316 0.05032286545411988 0.049735083068579766 537.621583878424 -2.730476696003974 0.4647084428038344 FRRS(ph)ET(ph)PPHWR ddPTM_BT-474_Trastuzumab_2h_R1 6 FRRSETPPHWR 11 2 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR 108.71 0.0038297 10874800000.0 816799.0 958850.0 686255.0 1128260.0 1045280.0 1074730.0 1106330.0 900010.0 1227160.0 1070700.0 True False 812401.4449388994 990764.7426129361 782873.7389646103 1271097.6003168947 1178390.212140042 1000436.4447422944 1052812.5913089816 967173.3163581769 924742.8611015345 1002367.0093276124 0.8104830240610753 0.988425131107957 0.7810250453970565 1.2680960052441739 1.175607538131673 0.998073994288167 1.0503264587840018 0.9648894141148526 0.922559154976431 1.0 19.934979406791427 3.769581888498313 24.999839526069444 1.0500020847283922 0.8728224811960337 0.40045024734723833 0.10849027857614688 790.3462452474167 636932.2884908773 0.02928855335381785 0.05279501698988477 5882.770263994208 -3.769581888498313 -0.1771796035323585 FS(ph)GGFGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSGGFGAR 8 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 1 FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR 124.81 0.0013521 622650000.0 830510.0 878230.0 782790.0 827060.0 758810.0 929730.0 920040.0 829200.0 1089160.0 892480.0 True False 826038.6264383347 907461.3546487532 893000.0278673472 931765.7111996278 855439.955680762 865459.953449009 875534.1503058888 891079.1145922836 820751.1119962751 835521.1623094296 0.9886507532078725 1.086102178597699 1.0687940271902183 1.1151910367227236 1.0238399627320935 1.0358324749750525 1.0478898558186858 1.0664949672002186 0.9823223504329571 1.0 19.672316844162197 1.237805170573509 24.999427888815088 0.9911611481766507 1.0562413366929488 0.36653171371312465 0.033000456377974635 20.02283907019499 662386.2963962409 0.02551274950720927 0.007816379132003792 17.290405180307356 -1.237805170573509 0.06508018851629815 FS(ph)PGAPGGSGSQPNQK ddPTM_BT-474_Trastuzumab_2h_R1 5 FSPGAPGGSGSQPNQK 16 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK 292.38 1.5194e-45 1008484000.0 1333744.0 1002097.0 965720.0 856287.0 932320.0 1171707.0 1053110.0 1063864.0 1324510.0 1069732.0 True False 1326563.2704968902 1035451.1928645702 1101684.9818112834 964692.8464029169 1051045.4257064192 1090709.652991596 1002167.0460291236 1143254.9338719293 998102.2580247043 1001460.7879163586 1.3246282695270981 1.033940824601762 1.1000780011601368 0.9632856903065161 1.0495123108047262 1.0891186815820604 1.000705227924335 1.1415873169139132 0.9966463690519106 1.0 19.933674503019862 4.740528754242774 24.915597471786675 1.0494601166431035 1.3246283675506516 0.7193558293360951 0.052822260954277854 87.05578460369935 1101996.5434999086 0.01205718751619276 0.07888414008652661 55021.03482316686 -4.740528754242774 0.27516825090754815 FS(ph)PGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSPGDFWGR 9 0 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 FS(1)PGDFWGR;FS(1)PGDFWGR 92.611 0.010446 129881000.0 258340.0 273390.0 246740.0 254500.0 252090.0 299140.0 280670.0 274710.0 305380.0 293950.0 True False 256949.1261442723 282489.62088225543 281478.84729747334 286719.67390552675 284192.16724550654 278461.1558998165 267092.91983647883 295210.25514911517 230123.19088235206 275189.8593367437 0.9337158235538373 1.0265262737627958 1.022853269287928 1.0418976723799778 1.0327130800911777 1.011887416821816 0.9705768972745582 1.072751212056375 0.83623426908604 1.0 18.070067782579507 1.2479274198796362 24.999681376999177 0.9181171100687278 1.0168635843777265 0.3555103834499648 0.05159553352209068 166.9613864202364 445622.5226360638 0.03270325086030557 0.01158750851545188 17.698131590573965 -1.2479274198796362 0.09874647430899874 FS(ph)PPRHELS(ph)PPQKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSPPRHELSPPQKR 14 2 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 2 FS(1)PPRHELS(1)PPQKR 65.085 0.031724 804620000.0 469900.0 477790.0 347690.0 456590.0 441800.0 523870.0 519340.0 498290.0 712690.0 585480.0 True False 467370.1106107978 493692.95131984557 396641.7298243438 514394.247184772 498060.6112462409 487656.09995733376 494217.5401285391 535474.9300653506 537057.0990567268 548114.1651453538 0.8526875244810659 0.900711900391999 0.7236480190566847 0.9384801194626312 0.908680422652753 0.8896980427937177 0.9016689798510829 0.9769405064059029 0.9798270747378062 1.0 19.06411689378107 2.1696237412013555 0.5501812040888543 1.0067692813360536 0.8398537133623691 0.5156629048699799 0.052437766201467804 0.6940922221230493 0.4327805161732852 0.04847216484097311 0.037437436624776006 147.78274910829748 -2.1696237412013555 -0.16691556797368445 FS(ph)PTMGR ddPTM_BT-474_Trastuzumab_2h_R1 6 FSPTMGR 7 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 FS(0.994)PT(0.006)MGR;FS(0.999)PT(0.001)MGR;FS(0.999)PT(0.001)MGR;FS(0.999)PT(0.001)MGR;FS(0.993)PT(0.007)MGR;FS(0.893)PT(0.107)MGR 169.09 0.001075 11291940000.0 12944910.0 13207810.0 11946660.0 11336310.0 11625710.0 13364220.0 12651550.0 11827400.0 15131830.0 13223530.0 True False 12875216.0428747 13647423.971560238 13628645.88576978 12771485.683661936 13106175.257518183 12440382.927389992 12039546.192885604 12710020.646320272 11402793.25263375 12379592.994166382 1.0400354881571525 1.1024129773887796 1.1008961192982667 1.031656346834684 1.0586919346778354 1.0049104953007952 0.9725316655045915 1.0266913179059762 0.9210959728649458 1.0 23.561460547830745 2.85580262389514 1.0616538099320307 0.9818702726165346 1.080529023033517 0.6223132592520937 0.03236297223280699 0.3315209283757082 0.7955010614478399 0.015620637777218508 0.01638568932032164 717.4681456303559 -2.85580262389514 0.09865875041698235 FS(ph)PVLGR ddPTM_BT-474_Trastuzumab_2h_R1 8 FSPVLGR 7 0 F8VZ44;Q9NRG9-2;Q9NRG9 F8VZ44 AAAS Aladin 1 FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR 151.97 0.0019354 3903871000.0 2202320.0 2359885.0 2200110.0 2192786.0 2141366.0 2369152.0 2383603.0 2151087.0 2943115.0 2293371.0 True False 2190462.953820755 2438432.3456443916 2509866.364301067 2470392.4827685873 2414056.26722933 2205378.09862393 2268299.0166422897 2311612.0349384593 2217823.7439705078 2147006.099326306 1.020240675845348 1.1357361054584476 1.1690075613146234 1.150622014322062 1.1243825846544262 1.0271876262093247 1.056493978919782 1.0766676609180588 1.032984370499191 1.0 21.033894859009596 2.748999689126866 23.4069580125283 1.0475783910741796 1.1252962627949736 0.47736424937026845 0.04185297995939526 280.9395870129758 629934.4324364453 0.013092323314550406 0.013722823486400793 561.0475744278281 -2.748999689126866 0.07771787172079403 FS(ph)PVTPK ddPTM_BT-474_Trastuzumab_2h_R1 6 FSPVTPK 7 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 FS(0.999)PVT(0.001)PK;FS(1)PVTPK;FS(1)PVTPK;FS(1)PVTPK;FS(0.999)PVT(0.001)PK;FS(1)PVTPK 125.83 0.0042075 3760880000.0 10646800.0 8647540.0 8062800.0 7464070.0 7217190.0 9412000.0 8965870.0 8809270.0 11882000.0 8239300.0 True False 10589478.81177068 8935368.141351674 9197972.156886077 8409020.496691657 8136256.366863414 8761370.593464836 8532156.61515051 9466662.459966673 8953840.310642827 7713460.819980371 1.3728570169618917 1.1584123326595717 1.1924572343791957 1.0901747857342532 1.054812691313329 1.135854682864278 1.1061385821847245 1.2272911836726959 1.160807129200614 1.0 22.878946872728374 5.3421313737468585 1.3336955958534489 1.1280298619435114 2.0764302884682873 0.594893349453589 0.062001376562141865 4.272609687961313 2.136997768811894 0.01738235305411841 8.160513949784681 219852.48242750543 -5.3421313737468585 0.9484004265247759 FS(ph)RS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSRSPIR 7 1 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2;H7C2G8 P18583-7 SON Protein SON 2 FS(1)RS(1)PIR;FS(1)RS(1)PIR 77.744 0.021177 365210000.0 95893.0 87351.0 70045.0 72956.0 77629.0 100391.0 79722.0 87155.0 99298.0 84527.0 True False 95376.72274271393 90258.42523020554 79906.72715794573 82192.2221196528 87514.59300686838 93451.20646499451 75865.54229238527 93658.94866412268 74827.3384250304 79132.41449279453 1.2052800783855588 1.14059991482282 1.009785025139372 1.0386669311996903 1.1059259794838827 1.1809472396865104 0.9587163841600369 1.1835724875126978 0.9455965536328208 1.0 16.27198115703939 FSALQQAVPTESTDNRR ddPTM_BT-474_Trastuzumab_2h_R1 6 FSALQQAVPTESTDNRR 17 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;;;; 245.97 2.0593e-20 5795940000.0 1940480.0 2265890.0 2117090.0 2276940.0 2252710.0 2235620.0 2273550.0 2187330.0 2681730.0 2414000.0 False True 1930032.6712875958 2341308.7788905697 2415157.869923843 2565200.370540083 2539579.265641739 2081076.8514834144 2163569.700695573 2350559.671636683 2020853.5748409526 2259936.4532706225 0.854020770581587 1.0360064662447406 1.068683974024394 1.1350763278443854 1.1237392369889039 0.9208563579173392 0.9573586450027894 1.0400998967182944 0.8942081410812837 1.0 21.107850775663632 2.7273435700117794 24.626786320996704 0.9707698273535117 1.0495748414651427 0.19439869822142664 0.08111442002399818 1095.780160270163 2405756.4191349368 0.02727472736042705 0.025940266687594474 533.7569832247386 -2.7273435700117794 0.07880501411163099 FSAS(ph)SGGGGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSASSGGGGSR 11 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5;H0YD99;H0YEN8;H0YDC0;H0YCF8 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 FSAS(0.81)S(0.189)GGGGSR;FS(0.001)AS(0.777)S(0.222)GGGGSR 127.52 0.00029889 508770000.0 723580.0 748140.0 667220.0 761970.0 704390.0 771450.0 745860.0 704280.0 943970.0 771550.0 True False 719684.3256772952 773041.3876398192 761158.7764197947 858435.3238734562 794089.8912533727 718121.4772979663 709779.9023381061 756836.9498613762 711341.2420499505 722309.018442812 0.9963662467192016 1.0702363779236461 1.0537855086743022 1.1884599277524068 1.0993769577532193 0.9942025628395538 0.9826540777080192 1.047802160207 0.9848156729144731 1.0 19.462256657804247 2.737937742242012 24.994756082308474 1.0067727725579245 1.0853976054752457 0.4066476223861346 0.047879174016633934 62.88365291708419 2523349.785710815 0.015911830923665233 0.0158263588082649 546.9375517053847 -2.737937742242012 0.07862483291732114 FSCMAWTHDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSCMAWTHDGK 11 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 110.66 0.0017644000000000004 380410000.0 470350.0 488380.0 475710.0 406320.0 328780.0 444290.0 538790.0 382310.0 784140.0 509790.0 False True 467817.68786079716 504635.43306805566 542685.8330545558 457760.0703390716 370648.1841682641 413577.27804616437 512726.66932232364 410839.9135308444 590899.2039376752 477254.7657468224 0.9802263307496619 1.057371176332597 1.1370988243676203 0.959152434282673 0.7766254226676246 0.8665754807057534 1.0743248808002865 0.8608398344392642 1.2381211175817566 1.0 18.864400078530096 3.615262151355337 8.744927289134734 0.9507992370353621 1.0578863544815786 0.08728105480100667 0.12572744303469038 0.641789978949192 42.81491582284844 0.033084595496319626 0.051298788262877114 4123.4634688505275 -3.615262151355337 0.10708711744621657 FSCPETDSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSCPETDSHR 10 0 P50416 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform 0 ; 138.22 7.0505e-05 1005060000.0 441480.0 628730.0 643380.0 588520.0 709340.0 787890.0 612000.0 462680.0 670800.0 628260.0 False True 439103.1207330396 649656.897974689 733962.3116407901 663026.5716576844 799670.2444124237 733425.018793563 582395.221932965 497207.5310414348 505490.3282594856 588163.9089195523 0.746565904629655 1.104550769135254 1.2478873669570563 1.127281972937873 1.359604410072364 1.2469738582580714 0.9901920418796448 0.845355390735887 0.8594378549817231 1.0 19.165858734315872 2.039652811051284 5.206088811124761 0.8911373857756714 1.1509512519501826 0.3213891491652304 0.15608944774830358 0.2081169444685709 13.722827997370178 0.06378739550259517 0.04512623470559683 109.56019865603855 -2.039652811051284 0.2598138661745112 FSDAGQPMSFVLEFHFEPNEYFTNEVLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSDAGQPMSFVLEFHFEPNEYFTNEVLTK 29 0 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W543;F8W118;F8VUX1;H0YHC3;H0YH88;P55209-3;B7Z4K9 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 ; 224.56 1.3402e-34 114520000.0 129602.0 121609.0 129750.0 131331.0 95668.0 138332.0 139695.0 134581.0 190078.0 158924.0 False True 128904.23723213583 125656.68205080715 148017.67219278275 147957.49113432903 107850.75273133849 128769.43443850194 132937.4191632769 144624.11760847093 143235.8238147086 148781.33425831838 0.8664005997441092 0.8445728940206871 0.9948672185973965 0.9944627252598839 0.724894377839662 0.8654945533350896 0.8935087175147064 0.9720582109941992 0.9627271090741698 1.0 17.1828340152503 1.743175997964024 3.657554926124426 0.977883669433357 0.8828715476582106 0.2649517550080436 0.0726120507158836 0.3186229982768141 9.069324009834723 0.042283277352203275 0.02076583788418824 55.35743999509328 -1.743175997964024 -0.0950121217751464 FSDFLGLHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSDFLGLHSK 10 0 O60749;O60749-2;D6RC15 O60749 SNX2 Sorting nexin-2 0 ; 102.53 0.0029347 6815800000.0 591130.0 3102120.0 2959600.0 4838400.0 3666300.0 1423270.0 1737880.0 893810.0 334383.0 982950.0 False True 587947.4217607176 3205372.1889288584 3376285.954695641 5450940.943907677 4133181.5731373774 1324882.6949172034 1653812.1050536952 960510.6408752146 251978.7901526408 920217.2894541658 0.6389223811578929 3.4832775102825444 3.6690094756840654 5.923536762867111 4.491527838592346 1.4397498396308854 1.7971973837121304 1.0437867793648488 0.27382531608605615 1.0 19.811615037132544 2.6612536952031207 5.690508781883718 1.1371282748849325 3.7567055790696284 0.49496699791350196 1.2767069279686547 0.20399144485335205 11.484491135915105 0.4422028474186478 0.4172292544815464 458.4095906761358 -2.6612536952031207 2.6195773041846957 FSDHVALLSVFQAWDDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSDHVALLSVFQAWDDAR 18 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;; 321.57 1.1760999999999993e-61 1662015000.0 923021.0 1529062.0 1393975.0 1511895.0 1482175.0 1633863.0 1638123.0 1400972.0 1613053.0 1544689.0 False True 918051.5574932734 1579955.9043325009 1590234.563352094 1703300.7519819112 1670921.2007104983 1520917.8965098008 1558880.7322524423 1505519.644631668 1215537.7019528132 1446105.6255452135 0.6348440537648471 1.0925591301374151 1.099666950505459 1.1778536241705924 1.155462762327976 1.051733614504391 1.0779853869005662 1.0410855320917891 0.8405594172932761 1.0 20.463741501893228 4.740538190797956 24.830736120894745 1.0680920093543727 0.6348438908185128 0.6725138996120321 0.0887577104123158 94.58777374850257 1187564.521789319 0.021615181515346003 0.14122566438065795 55022.23035913093 -4.740538190797956 -0.43324811853585987 FSDIQIR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSDIQIR 7 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;;; 133.81 0.0075265 359673000.0 798750.0 919870.0 859060.0 889000.0 871290.0 936770.0 922450.0 808410.0 1067670.0 943480.0 False True 794449.6187494678 950487.3168768422 980008.1809166238 1001547.3088487771 982243.6169595694 872013.2948193868 877827.5693987956 868737.6592228034 804557.0345450268 883266.2986461329 0.899445184274773 1.076105041405684 1.1095274238570818 1.1339131928660076 1.112058298233668 0.9872597835511275 0.9938424807380585 0.9835512354025067 0.9108884101864281 1.0 19.752488940414047 2.636475509103329 5.872299700204228 0.9752091426769904 1.0726993431935095 0.3298058440246584 0.06473734942778887 0.27832737948475955 13.364227065218001 0.021799406329477824 0.020509355495802243 432.98764984820986 -2.636475509103329 0.09749020051651902 FSDSTSKT(ph)PPQEELPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSDSTSKTPPQEELPTR 17 1 F6Q6H0;I6L8A6;Q99708-3;Q99708;Q99708-2 F6Q6H0 RBBP8 DNA endonuclease RBBP8 1 FSDS(0.303)T(0.136)S(0.027)KT(0.534)PPQEELPTR;FSDS(0.178)T(0.142)S(0.142)KT(0.539)PPQEELPTR 169.9 3.0977e-09 724950000.0 865910.0 769760.0 685630.0 640900.0 648450.0 991140.0 957500.0 915240.0 1364180.0 998140.0 True False 861248.0367716452 795380.9962702543 782160.7443972062 722037.8742870432 731026.2638357296 922624.8246925983 911182.066994794 983539.8562945516 1027996.1180754699 934437.8506493539 0.9216750329335994 0.8511866206163768 0.837038807721318 0.7726975890213448 0.7823166231202313 0.987358146988003 0.9751125410444373 1.0525471069168228 1.1001225146874145 1.0 19.83373918812193 2.5820814340263984 3.506179323264101 1.032467438881308 0.8312349810454318 0.7881237361371375 0.049494974344671996 0.11695729580559645 2.664304007549801 0.018277556020350104 0.016828324217243645 382.0158954573969 -2.5820814340263984 -0.20123245783587618 FSEAEHWLDYFPPLAIQDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSEAEHWLDYFPPLAIQDLK 20 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8;A0A6I8PRU9 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 154.26 4.3401e-08 524360000.0 668670.0 650760.0 588710.0 601480.0 617080.0 701040.0 715240.0 715500.0 937740.0 771180.0 False True 665069.9550162212 672420.1532072731 671595.2508409489 677627.3063288659 695661.4802802866 652578.7548706547 680641.1087178651 768894.2432353825 706646.5420722266 721962.6321595841 0.9211971996761361 0.9313780565011847 0.9302354733125552 0.9385905532283585 0.9635699263262094 0.9038954729812212 0.9427650108176441 1.0650055958372988 0.9787854808474742 1.0 19.461564641475576 1.8564665431503646 7.300311144231032 1.0194188070925063 0.9325755125537424 0.696439082217757 0.024667753919316242 0.12412486299422584 6.935242433748202 0.010026944622642258 0.006192531745036341 71.85657999198492 -1.8564665431503646 -0.08684329453876394 FSEAEHWLDYFPPLAIQDLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSEAEHWLDYFPPLAIQDLKR 21 1 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8;A0A6I8PRU9 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 115.76 9.478e-05 272230000.0 319070.0 385430.0 378530.0 368610.0 402520.0 429250.0 456950.0 388070.0 597690.0 485030.0 False True 317352.1625720093 398258.8045526444 431823.733758258 415275.9882055657 453778.53607704205 399576.9578458118 434845.5827814839 417029.7539795318 450397.30813567684 454074.97014492523 0.6988981631617381 0.877077202527886 0.9509965581684333 0.91455379730141 0.9993471693280328 0.8799801445084728 0.9576515143362693 0.918416079720118 0.9919007603346324 1.0 18.792570988091757 4.749716262398034 2.038553531797136 0.9461136745125108 0.6223726266599141 0.803499436945791 0.037768659026799094 0.2888773862295553 1.2748745902351075 0.008792038841583284 0.17547604339255166 56197.405073653434 -4.749716262398034 -0.3237410478525967 FSEAEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSEAEQR 7 0 P33993;P33993-3;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 ; 80.229 0.07090700000000001 569310000.0 636230.0 667180.0 643520.0 633160.0 581320.0 682470.0 742720.0 615830.0 841530.0 749390.0 False True 632804.6083717982 689386.6829811723 734122.022423888 713317.9910806429 655347.656246412 635292.4552615761 706791.7961340704 661786.3617213777 634146.2074242763 701563.2886149419 0.901992191782312 0.9826436105888477 1.0464088334399952 1.0167550136337773 0.9341247851497889 0.9055383392648714 1.0074526526743595 0.9433024396528877 0.9039044911774624 1.0 19.420213730886967 3.2286377437648293 24.999516566599027 0.9480882498703097 0.9908893871443858 0.1335538181694722 0.046820605780515445 386.82561044645723 974560.4843837906 0.0138102312509567 0.01669092661918602 1692.9250988296349 -3.2286377437648293 0.042801137274076084 FSEEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 FSEEQR 6 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;; 160.68 0.020322 4933390000.0 5999090.0 6929170.0 6553450.0 7086890.0 6668520.0 7033720.0 7172780.0 6271450.0 7656690.0 6838820.0 False True 5966791.566001563 7159803.2346782815 7476118.796391465 7984089.547364791 7517716.494585297 6547495.49199592 6825805.22871949 6739457.444777821 5769801.343889557 6402360.652591634 0.9319674241697468 1.1183067657677235 1.167712848754495 1.2470540134493804 1.1742100925761148 1.0226689571674688 1.0661388195862487 1.052651953002637 0.9011990509397466 1.0 22.61017251722458 1.8248223670846793 1.150982847418368 0.9638615474762477 1.1272344250854256 0.3271542156058508 0.08566219138426746 0.5731400496073745 1.4059324445699077 0.07350117487324372 0.030383652609001673 66.8070610843177 -1.8248223670846793 0.16337287760917785 FSEGNILELLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSEGNILELLHR 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 0 147.26 6.5435e-05 216790000.0 130510.0 168920.0 155290.0 139010.0 138080.0 164760.0 171730.0 147840.0 204280.0 173470.0 False True 129807.34866102398 174542.40008570364 177153.48219512324 156608.6517469834 155663.6695357199 153370.52900332215 163422.76382769286 158872.57151630888 153937.93121175867 162398.9960848612 0.7993112752568585 1.0747751174181948 1.090853308616219 0.964344949922892 0.9585260579713082 0.9444056472071956 1.0063040275341155 0.9782854287676163 0.9478995247687294 1.0 17.309183188561693 FSEGVLQS(ph)PSQDQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 FSEGVLQSPSQDQEK 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 FSEGVLQS(0.976)PS(0.024)QDQEK;FSEGVLQS(0.938)PS(0.062)QDQEK;FSEGVLQS(0.834)PS(0.166)QDQEK;FSEGVLQS(0.994)PS(0.006)QDQEK 349.2 2.7641999999999996e-82 961440000.0 1621180.0 1250700.0 1111960.0 1064400.0 1062920.0 1744530.0 1639360.0 1356300.0 2015550.0 1701670.0 True False 1612451.7470100306 1292328.7934358846 1268514.3026704185 1199152.9308646095 1198276.5615795704 1623934.7472818978 1560057.8938366417 1457513.9931518498 1518844.7094862938 1593067.963727015 1.0121675808718587 0.811220125481938 0.7962713026396585 0.7527318094195848 0.7521816952342559 1.0193756853176994 0.9792789318208712 0.9149101145326946 0.9534086078367464 1.0 20.603376385993023 2.735866198429406 24.99950302602242 0.964284095720595 0.818552264862377 0.5029178236381742 0.07339353358234686 213.85878807422037 1984228.1854418362 0.0241228041246602 0.023685469328220524 544.334923130549 -2.735866198429406 -0.14573183085821806 FSESES(ph)RSPLEDETDNTWMFK ddPTM_BT-474_Trastuzumab_2h_R1 3 FSESESRSPLEDETDNTWMFK 21 1 A0A1B0GVJ7;Q9BY89-2;Q9BY89 A0A1B0GVJ7;Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 FSESES(0.673)RS(0.326)PLEDETDNTWMFK;FS(0.014)ES(0.086)ES(0.526)RS(0.374)PLEDETDNTWMFK;FS(0.02)ES(0.019)ES(0.532)RS(0.429)PLEDETDNTWMFK 248.07 1.1101999999999999e-30 201843000.0 143373.0 146900.0 140788.0 143395.0 143292.0 155450.0 146100.0 156110.0 186442.0 161500.0 True False 142601.09569823774 151789.47769707488 160609.72664876675 161548.7922973796 161539.3868417753 144704.1073899396 139032.5848438008 167759.72091051782 140495.86729480483 151192.9317328938 0.9431730310657981 1.0039455942638573 1.0622833012624506 1.0684943432592542 1.0684321349569446 0.9570824887871231 0.9195706654423755 1.1095738338277075 0.9292489118672094 1.0 17.206031169602536 2.7392908627258152 24.99680526417529 0.9944287949572762 1.0318726901468949 0.1122854558737656 0.060651808852733774 190.77201321864513 6530329.750112637 0.02003195115742063 0.020195379511566018 548.6442888303663 -2.7392908627258152 0.03744389518961866 FSESESRS(ph)PLEDETDNTWMFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSESESRSPLEDETDNTWMFK 21 1 A0A1B0GVJ7;Q9BY89-2;Q9BY89 A0A1B0GVJ7;Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 FSES(0.002)ES(0.139)RS(0.859)PLEDETDNTWMFK 119.45 3.5474e-05 31134000.0 14130.0 18497.0 16763.0 18681.0 16420.0 15039.0 17792.0 17964.0 18397.0 14834.0 True False 14053.925649990584 19112.661463327382 19123.084693392022 21046.01268459392 18510.989671035033 13999.38932799806 16931.33298795964 19304.56489934367 13863.305857170171 13887.281419973655 1.011999773388134 1.3762709118746757 1.3770214713073987 1.5154883125162337 1.3329455284467153 1.0080727036944153 1.2191970822747076 1.3900895586070936 0.9982735596638086 1.0 13.761476583923368 2.9444514379603466 24.045054156127048 1.174596648347339 1.3402543392773363 0.23339685617744022 0.1669842685240197 342.584803497796 148292.59296609968 0.052399813802438806 0.055578716029705995 879.9367132215093 -2.9444514379603466 0.16565769092999738 FSFSGNTLVSSSADPEGHFETPIWIER ddPTM_BT-474_Trastuzumab_2h_R1 3 FSFSGNTLVSSSADPEGHFETPIWIER 27 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;; 216.71 3.6148999999999998e-34 2040174000.0 585295.0 797561.0 851053.0 831737.0 928892.0 887311.0 918455.0 713400.0 942474.0 798227.0 False True 582143.8367523871 824107.3357491948 970873.8649147161 937034.8189200851 1047180.8902257656 825973.2790754241 874025.8228111771 766637.5305717976 710213.9112045773 747283.4694634823 0.7790134005912664 1.1028041826495492 1.299204257270353 1.253921513335276 1.4013168135213763 1.105301151206299 1.1696041174826073 1.0258992228507486 0.9503942482689743 1.0 19.511296083466505 1.6544263778777526 2.7578182443953794 0.9748124262460175 1.1748101781442852 0.19383163121722313 0.15530456682221633 0.3729989204082175 6.536193746963168 0.10597524594155369 0.04427763597819838 45.125952080054844 -1.6544263778777526 0.19999775189826774 FSFSPEPTLEDIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSFSPEPTLEDIRR 14 1 Q9H773 Q9H773 DCTPP1 dCTP pyrophosphatase 1 0 193.06 4.8397e-07 452880000.0 151850.0 182910.0 192750.0 188120.0 172940.0 192720.0 198680.0 168660.0 219870.0 198720.0 False True 151032.45647212086 188998.04877856997 219887.52458696626 211935.97271162178 194962.88390431178 179397.72001408238 189069.08936869487 181246.26563812658 165685.98460705596 186037.51946724852 0.8118386920263672 1.0159136141988963 1.1819525718073065 1.1392109146506473 1.0479761526740554 0.9643093529080565 1.0162954758272835 0.9742457658925869 0.8906052127631415 1.0 17.505234083354367 2.745208554897436 18.633067448264097 0.9720235960377236 1.051542007554912 0.11076549606324326 0.09636836164036747 35.877707170277354 100555.3790959953 0.031537937476946214 0.032509172522457615 556.171275162427 -2.745208554897436 0.07951841151718841 FSFWDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSFWDK 6 0 P78406;E9PQ57 P78406 RAE1 mRNA export factor 0 ; 148.07 0.025152 2389500000.0 2922700.0 2635500.0 2412500.0 2033330.0 1629150.0 2518800.0 2167000.0 2245700.0 3328200.0 2466600.0 False True 2906964.5079424996 2723221.024306606 2752159.03017409 2290749.3695179797 1836612.5957714203 2344681.2846174305 2062173.931256099 2413285.537433541 2508009.705595136 2309179.476237495 1.258873352139357 1.1793024545427442 1.1918341811431532 0.9920187638469987 0.7953529011802667 1.0153742092138205 0.8930331974958226 1.0450835728739774 1.0861042770402625 1.0 21.13894887730634 3.7378705821673064 4.601808517321132 0.9697466962299894 1.210236714741159 0.6523013465581218 0.07870383667520113 0.12012521046546283 7.072800290621116 0.021526229638138234 0.03704534499708913 5468.529788445052 -3.7378705821673064 0.24049001851116958 FSFWDKDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSFWDKDAR 9 1 P78406;E9PQ57 P78406 RAE1 mRNA export factor 0 61.78 0.07928400000000001 277770000.0 1003000.0 1365800.0 1694800.0 1189100.0 758560.0 968600.0 1395200.0 844300.0 2826100.0 1204400.0 False True 997599.9594437754 1411259.827356466 1933413.108534321 1339639.9380788296 855158.1196626268 901642.9618391471 1327708.8458184192 907305.9532685293 2129645.5227998374 1127534.1608612826 0.8847625145846977 1.2516337653827319 1.714726857639024 1.188114723775222 0.7584321161581502 0.799659108465871 1.1775331443654269 0.8046815651026227 1.8887636372569663 1.0 20.104739712745925 3.472864710978981 24.91079176981431 1.0338090846608103 1.3089870736903428 0.05969591944370545 0.3582995539647043 259.7708712788483 1520261.107192388 0.09777764523251027 0.13292451685796372 2970.740458902526 -3.472864710978981 0.2751779890295325 FSGDLDDQTCR ddPTM_BT-474_Trastuzumab_2h_R1 5 FSGDLDDQTCR 11 0 P05455 P05455 SSB Lupus La protein 0 ;;;; 280.25 5.644200000000001e-27 9786570000.0 10338100.0 11713690.0 10287280.0 10562280.0 10611010.0 11290220.0 10674190.0 10554860.0 13750660.0 11055090.0 False True 10282440.818270884 12103573.090574851 11735639.605359294 11899463.565025035 11962259.22711628 10509753.665719153 10157838.650334354 11342517.249693079 10361994.092403958 10349544.69146128 0.9935162487635076 1.169478798479 1.133928105556333 1.1497572037968482 1.1558246844410018 1.0154798089224206 0.9814768623314328 1.0959435982774233 1.0012028935874782 1.0 23.303063964707192 2.7319051697047887 24.550906448544538 1.0274657609675788 1.125593291325363 0.46355037691381185 0.05415676224620707 386.616115836422 1426163.3915185698 0.01713845070014885 0.016502135961944775 539.39283062872 -2.7319051697047887 0.09812753035778421 FSGEEGEIEDDES(ph)GTENR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSGEEGEIEDDESGTENR 18 0 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 FSGEEGEIEDDES(0.998)GT(0.002)ENR;FSGEEGEIEDDES(1)GTENR 329.08 7.979199999999998e-75 6911900000.0 2810600.0 2734100.0 2494830.0 2351360.0 2360040.0 2534890.0 2470050.0 2476950.0 2607840.0 2439850.0 True False 2795468.0418870137 2825102.8657016493 2846080.378548902 2649041.934909628 2660577.1049469886 2359659.020789218 2350564.2449926795 2661792.5866972487 1965172.7752656785 2284136.684139325 1.2238619787065683 1.2368361689204967 1.2460201695947635 1.1597563111280274 1.1648064336173947 1.0330638429715298 1.0290821303797697 1.1653385741669076 0.8603569081095366 1.0 21.123217554363706 2.8777041814876263 0.515722883773964 0.9885942666952088 1.2693178899951145 0.6530800729661193 0.07042104833099512 0.7193184061067449 0.3981044467635937 0.06163763424772767 0.0894825536627732 754.5780737628567 -2.8777041814876263 0.28072362329990574 FSGEEGEIEDDES(ph)GTENREEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSGEEGEIEDDESGTENREEK 21 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 FSGEEGEIEDDES(0.988)GT(0.012)ENREEK;FSGEEGEIEDDES(0.994)GT(0.006)ENREEK 295.01 4.6415e-55 3574400000.0 1819870.0 1467920.0 1198690.0 1160720.0 1330950.0 1890990.0 1665390.0 1611140.0 2233140.0 1671300.0 True False 1810072.0221265645 1516778.829823621 1367455.1327997423 1307667.0329886982 1500438.5933412956 1760270.312211654 1584828.7232923845 1731371.4480031508 1682812.5695429163 1564636.2031280813 1.1568644637697878 0.9694130985792212 0.8739764106607485 0.8357642692750938 0.9589696252340069 1.1250348858683272 1.0129055687986341 1.106564864434126 1.075529612684771 1.0 20.57739582139898 2.820381719977367 7.294007476291505 1.0690466586180039 0.9473013553565102 0.2638642390397745 0.08649005028482391 0.3501868593094717 27.353539713572346 0.027417308251815497 0.029098243397460352 661.2744149911568 -2.820381719977367 -0.12174530326149369 FSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_BT-474_Trastuzumab_2h_R1 4 FSGEEGEIEDDESGTENREEKDNIQPTTE 29 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 FSGEEGEIEDDES(0.968)GT(0.032)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.979)GT(0.021)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.972)GT(0.028)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.963)GT(0.037)ENREEKDNIQPTTE 232.55 4.2369999999999997e-36 4593450000.0 2220030.0 1859705.0 1643245.0 1819589.0 1808907.0 2488570.0 2476480.0 2200860.0 3414880.0 2437050.0 True False 2208077.6051485185 1921604.1567095881 1874599.6126584134 2049948.7808333389 2039260.58421821 2316541.013363662 2356683.201327694 2365099.3489406346 2573328.581047629 2281515.382536526 0.9678118420984033 0.8422490470229491 0.8216467120963634 0.8985031600156307 0.8938184681231544 1.0153519152644046 1.0329464440023186 1.0366352850582943 1.1279032351676161 1.0 21.12156095014449 2.6862563917120608 1.9547301589018964 1.0522372118399108 0.8740699569086864 0.7392139131128561 0.04712133963996781 0.16370067806693914 1.2384944188581875 0.017598809339527607 0.016708245011879615 485.5750814785054 -2.6862563917120608 -0.17816725493122443 FSGFSAKPNNSGEAPSS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSGFSAKPNNSGEAPSSPTPK 21 1 P49916-3;P49916;P49916-4;P49916-2;K7ERZ5;K7ENR9 P49916-3 LIG3 DNA ligase 3 1 FSGFSAKPNNSGEAPS(0.026)S(0.974)PTPK 210.91 1.0786e-22 2043900000.0 2843600.0 2004900.0 1983300.0 1573500.0 1726300.0 2923500.0 2572400.0 2675600.0 3952800.0 2680600.0 True False 2828290.373553662 2071631.884512357 2262531.4008473647 1772704.9386654084 1946134.0724182562 2721405.3261787593 2447963.1844777064 2875266.85842151 2978685.404806342 2509521.8130228785 1.1270236261253321 0.8255086183199758 0.9015786948358906 0.7063915242601827 0.7754999627096343 1.0844318276319955 0.9754699767000548 1.145742923412994 1.1869533826519427 1.0 21.258981055530448 2.7245968007369044 23.53125463964583 1.0836309611212045 0.8578603452476051 0.4453013556036156 0.11762646195900271 329.60815364334695 555440.704797443 0.03858864380396135 0.03658223238175325 530.3917995089023 -2.7245968007369044 -0.22577061587359937 FSGKDPNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSGKDPNSK 9 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 99.973 0.0045369 1077320000.0 2862800.0 2830800.0 2670200.0 2604700.0 2900000.0 3849200.0 3694800.0 3881400.0 5825400.0 4234400.0 False True 2847387.00288698 2925021.4667452644 3046140.9502055375 2934454.752934094 3269297.8103533285 3583113.8640421694 3516068.4084933302 4171049.777349841 4389808.226360772 3964156.9667477747 0.7182831120895292 0.7378672164803238 0.7684208712614665 0.7402468614509843 0.8247145200800375 0.9038778973935999 0.8869649809497681 1.0521908724446405 1.1073749761130687 1.0 21.918582658656124 2.3366291529994694 0.8867578879511048 1.0687220457086066 0.7360506522574334 0.9055590023668717 0.04093126654118574 0.15951436482198852 0.24407408623452623 0.030039403533253 0.018878929054560165 217.08466865011016 -2.3366291529994694 -0.33267139345117325 FSGWYDADLSPAGHEEAK ddPTM_BT-474_Trastuzumab_2h_R1 6 FSGWYDADLSPAGHEEAK 18 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ;;;;; 302.44 1.1372e-49 13352850000.0 9362420.0 9090100.0 8399490.0 7747970.0 7650440.0 12464940.0 11815680.0 9544970.0 13452060.0 11360560.0 False True 9312013.77098264 9392658.483418519 9582065.182324123 8728862.207582746 8624678.186289476 11603268.037112601 11244110.418119095 10257264.129775576 10136980.06136895 10635519.334535256 0.8755579749401631 0.8831405583476336 0.9009494394137956 0.8207274071928687 0.8109315506844831 1.090992143602702 1.0572225073774861 0.964434721722387 0.9531250654072464 1.0 23.342387146317407 2.7458517723579314 24.999954276500528 1.0107913275269595 0.8599298977256918 0.74438625316142 0.04536746589595521 322.25788873649617 1104959.480091379 0.01534844554436081 0.015978960692421648 556.9956101194795 -2.7458517723579314 -0.1508614298012677 FSGWYDADLSPAGHEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSGWYDADLSPAGHEEAKR 19 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ;;; 173.37 4.2509e-12 4087360000.0 3699210.0 4567050.0 4500130.0 4444560.0 4153740.0 5988070.0 5986200.0 4661170.0 6447550.0 5829270.0 False True 3679293.864380865 4719061.498409977 5133709.188168841 5007240.840289002 4682694.167854142 5574128.815300579 5696624.63649528 5009010.17434167 4858637.69524365 5457240.997910868 0.6742040283339815 0.8647339379397978 0.9407151324513833 0.9175407210724 0.8580698872647852 1.0214188483584392 1.0438653229124484 0.9178649387592028 0.8903102679730702 1.0 22.379740325479965 5.375912638724515 1.022758708212011 0.9537660037860227 2.6216686050836486e-15 0.6985717827589257 0.05494278996459013 3.4335989418636896 1.1483913225448183 0.01719337729717301 4.900330688671025 237636.22171935614 -5.375912638724515 -0.9537660037860201 FSHDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 FSHDLK 6 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 ;;; 142.63 0.011502 1096400000.0 2585870.0 2484840.0 2285310.0 2199500.0 2139080.0 2927870.0 2961850.0 2356740.0 3600700.0 2958530.0 False True 2571947.963237166 2567546.397282503 2607061.7837293916 2477956.4744801815 2411479.1586795137 2725473.2383646304 2818574.0001342366 2532611.9060832327 2713355.7319080606 2769714.082475037 0.928596918906104 0.9270077418923056 0.9412746969895542 0.8946614707124793 0.8706599623180593 0.9840269274036861 1.017640780313157 0.9143947103088966 0.9796519247515202 1.0 21.40130562390716 2.7176708349240624 24.994836625773456 0.9721995020924192 0.9138636797538121 0.527174935629565 0.031226726346349966 782.08938524862 935776.7822038505 0.010743466314037175 0.010138297267037171 522.0003989533673 -2.7176708349240624 -0.058335822338607124 FSHEEIAMATVTALR ddPTM_BT-474_Trastuzumab_2h_R1 6 FSHEEIAMATVTALR 15 0 P04075;J3KPS3;P04075-2;H3BQN4;H3BU78;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 ;;;;; 242.91 5.9849e-18 9558064000.0 4469520.0 4745760.0 4850640.0 3988070.0 3645268.0 5254130.0 5209190.0 3719542.0 5500840.0 4854160.0 False True 4445456.600930351 4903719.752727503 5533567.949481302 4492959.253093968 4109471.272603805 4890924.359991657 4957201.578661735 3997113.1114915707 4145231.689479588 4544363.3529445445 0.9782352896693205 1.0790773914568499 1.2176772673549083 0.9886883825393784 0.9043007685424299 1.0762617291204402 1.090846218414663 0.8795760376206757 0.9121699493491565 1.0 22.115646762118715 2.404427260528405 0.6894968617787793 0.9351059139368948 1.07052149585726 0.16460200245650514 0.09051513835694956 1.2165580827078641 1.1556997004619152 0.07860047987760985 0.05865714213472074 253.76239267238194 -2.404427260528405 0.13541558192036518 FSHEEIAMATVTALRR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSHEEIAMATVTALRR 16 1 P04075;J3KPS3;P04075-2;H3BQN4;H3BU78;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 ; 241.3 4.3732e-20 3225000000.0 1349240.0 1600010.0 1508540.0 1545740.0 1488480.0 1962820.0 1928710.0 1251950.0 2322000.0 1823900.0 False True 1341975.8417546556 1653265.36562353 1720929.3195352638 1741430.525511709 1678029.105087832 1827134.8733812862 1835410.9289123022 1345376.866273288 1749774.2132059124 1707497.1404806476 0.7859315309757412 0.968239024492977 1.007866589487134 1.0198731723916734 0.9827419708682379 1.0700661395350632 1.0749130322968787 0.7879233495492558 1.0247596741001652 1.0 20.703451731782238 4.735548893230312 4.2802273689287125 0.9854974883129775 0.7712824827006005 0.3995763007664379 0.07591694173522588 0.24009794577825597 10.311272334816922 0.019965066201023462 0.15654191974429404 54393.73651898631 -4.735548893230312 -0.21421500561237694 FSHQGVQLIDFSPCER ddPTM_BT-474_Trastuzumab_2h_R1 4 FSHQGVQLIDFSPCER 16 0 P55884;P55884-2;C9JQN7 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;; 181.51 2.2933e-09 2244840000.0 1167470.0 1409659.0 1306990.0 1400208.0 1343727.0 1270226.0 1266346.0 1170122.0 1687637.0 1375247.0 False True 1161184.47123811 1456578.6476581416 1491002.8314392697 1577474.1892334383 1514842.6685560825 1182418.2664103766 1205088.0060684993 1257442.4453991205 1271741.4745272119 1287477.5590518075 0.9019065715547625 1.131342940634144 1.1580806367897807 1.2252440270844065 1.1765973378764933 0.9183991271127054 0.9360069987984988 0.9766713497710926 0.9877775853924904 1.0 20.29611585542444 2.737241654380461 24.992944933239922 0.9612363339466934 1.127454565463052 0.46419581513940833 0.08289729685208244 105.52906284196179 1999641.151304925 0.02708930765232722 0.02686509065780008 546.0616215174699 -2.737241654380461 0.1662182315163585 FSHVDS(ph)PNSECKGEDATDDQFESPK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSHVDSPNSECKGEDATDDQFESPK 25 1 Q5T5P2;Q5T5P2-3;A0A0U1RRK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 FS(0.007)HVDS(0.982)PNS(0.01)ECKGEDATDDQFESPK 142.22 2.1285e-07 108160000.0 47824.0 42809.0 41251.0 32560.0 35905.0 49630.0 48377.0 37502.0 69905.0 48695.0 True False 47566.5208977459 44233.87168641305 47058.782239880355 36682.092661547984 40477.2889243918 46199.19491645351 46036.81969191343 40300.58967129739 52677.84942900907 45587.24341011305 1.0434173540572924 0.9703124904586845 1.0322796185882313 0.8046569592187811 0.8879082369655267 1.0134237444636696 1.0098618878477887 0.884032169015886 1.1555392581013801 1.0 15.476342553858592 1.241087837589742 24.999999744918902 1.0777696226222426 0.9527218615979548 0.2683908173986884 0.08046912814142168 81.06903574231174 802026.8586024506 0.059930792612450504 0.019570115319124358 17.42159195599185 -1.241087837589742 -0.12504776102428783 FSHVDSPNSECKGEDATDDQFES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 FSHVDSPNSECKGEDATDDQFESPK 25 1 Q5T5P2;Q5T5P2-3;A0A0U1RRK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 FSHVDSPNSECKGEDATDDQFES(1)PK;FSHVDSPNSECKGEDATDDQFES(1)PK;FSHVDSPNSECKGEDATDDQFES(1)PK 232.53 2.1173999999999995e-35 965580000.0 450884.0 319415.0 258708.0 232629.0 274359.0 410658.0 354982.0 291293.0 531884.0 300874.0 True False 448456.4906419216 330046.5351845547 295131.83766975295 262079.8075480111 309296.99239680293 382270.17904495145 337810.1644970712 313030.762815883 400808.3150804535 281671.9637288091 1.5921232795241593 1.1717408108899334 1.0477856360383204 0.9304433571540648 1.0980751804414264 1.3571467106076531 1.199303473533885 1.1113309208056852 1.4229613404703199 1.0 18.10365644637708 7.999999999993689 0.012631594068280919 2.666496762742887e-11 2.5661003677774876 0.06238181020630951 0.1893950111383579 34959.35196655314 34.10882829727047 2869.140596016285 4173.012263339555 99999999.99854675 -7.999999999993689 2.5661003677508227 FSIDVFEETR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSIDVFEETR 10 0 Q93099;H7C4R8 Q93099 HGD Homogentisate 1,2-dioxygenase 0 99.815 0.010325 24798000.0 24985.0 29748.0 28083.0 28385.0 27312.0 30766.0 27983.0 26064.0 38525.0 27805.0 False True 24850.48353609447 30738.144196954272 32036.842298188167 31978.538089620364 30790.021309093107 28639.218835373922 26629.355384559047 28009.028030310266 29031.029958551975 26030.461094941846 0.9546693562383086 1.1808528510056708 1.2307443260931503 1.228504480692212 1.1828457896612565 1.1002194210435636 1.0230074406839291 1.0760096768225473 1.1152714449684946 1.0 14.667913246938582 2.54628599634149 4.271377878403351 1.0601429326356124 1.1645301823976557 0.26782936970156146 0.0784313780556726 0.30510054740038745 10.740562625394457 0.027037961867537794 0.024794488160063733 351.79203019212815 -2.54628599634149 0.10438724976204328 FSKEEPVSS(ph)GPEEAVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSKEEPVSSGPEEAVGK 17 1 O00567 O00567 NOP56 Nucleolar protein 56 1 FSKEEPVS(0.034)S(0.966)GPEEAVGK;FSKEEPVS(0.187)S(0.813)GPEEAVGK 191.65 1.3986000000000002e-10 745980000.0 709580.0 687320.0 633960.0 640820.0 657580.0 942830.0 856080.0 849620.0 1455020.0 995790.0 True False 705759.7001217493 710197.0307062862 723216.0575208974 721947.7462952448 741318.9152179792 877654.3812830909 814668.1398568182 913022.958682942 1096449.817269107 932237.8296612889 0.757059709085367 0.7618195787702833 0.7757849279552025 0.7744244261762591 0.7952036397056785 0.9414490094249556 0.8738844465824913 0.9793884453441154 1.1761481699015386 1.0 19.830338532215386 2.132618614167015 0.8441503884147125 1.0744400311219546 0.7620793698879857 0.805342878175793 0.058189846314517395 0.2556870105139824 0.34153513201017877 0.046763598082180995 0.02548012936034995 135.71211355440474 -2.132618614167015 -0.3123606612339689 FSLCS(ph)DNLEGISEGPSNR ddPTM_BT-474_Trastuzumab_2h_R1 3 FSLCSDNLEGISEGPSNR 18 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-5;Q14C86;C9IZ08;H0Y7I9;B4DGD8;A0A0A0MQV8 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 FS(0.024)LCS(0.976)DNLEGISEGPSNR;FS(0.105)LCS(0.895)DNLEGISEGPSNR;FS(0.114)LCS(0.775)DNLEGIS(0.106)EGPS(0.005)NR 287.38 5.7868e-40 304852000.0 289547.0 326894.0 271110.0 312647.0 313665.0 343691.0 330477.0 339928.0 385532.0 349662.0 True False 287988.1111236959 337774.4691784043 309279.9314696361 352228.07814358064 353608.37851188786 319932.4501315898 314490.56496526214 365295.15347940894 290522.8044641261 327346.2717993008 0.8797659724081545 1.0318567776006233 0.9448096957684572 1.076010660538499 1.0802272974371574 0.9773517455171858 0.9607274988550332 1.1159288647813743 0.8875091286888048 1.0 18.320458022364956 5.492822779826522 1.6387864752183772 1.0174250251602153 4.3255684412438397e-16 0.22949220261406544 0.06723528090484839 15.264169576167788 6.104308758968974 0.016919854667988985 44.9018170544625 311044.6815083649 -5.492822779826522 -1.0174250251602148 FSLCSDNLEGIS(ph)EGPSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSLCSDNLEGISEGPSNR 18 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-5;Q14C86;C9IZ08;H0Y7I9;B4DGD8;A0A0A0MQV8 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 FSLCSDNLEGIS(0.903)EGPS(0.097)NR 259.97 1.0656999999999999e-30 151900000.0 98889.0 114430.0 105450.0 108850.0 107190.0 117290.0 106620.0 105200.0 139300.0 117880.0 True False 98356.59261160075 118238.73337560428 120296.44341216901 122630.39883935798 120840.01113509416 109182.01837096164 101462.38327204679 113050.55819477582 104971.38152436844 110356.79747785466 0.8912599392107042 1.0714222963866933 1.090068270931013 1.1112174477876295 1.0949938191106277 0.9893547191134396 0.9194031141797793 1.0244095586179158 0.9511999616102768 1.0 16.751815970257887 2.6190858436681412 6.222107789531204 0.9762355049298819 1.0580512810530283 0.258802976270085 0.06324341672587344 0.3248474261258702 15.349818721107521 0.020885936576316842 0.01963717790550746 415.99282848836094 -2.6190858436681412 0.08181577612314639 FSLDVCEAMEYLEGNNFVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSLDVCEAMEYLEGNNFVHR 20 0 P41240 P41240 CSK Tyrosine-protein kinase CSK 0 188.96 2.3625e-17 230340000.0 98046.0 123030.0 110910.0 103000.0 107270.0 127720.0 119230.0 114680.0 130020.0 101970.0 False True 97518.13122993469 127124.97917679448 126525.16395299828 116039.78943917208 120930.19866089709 118891.01702054072 113462.38939716892 123238.00393324053 97978.31317873932 95462.18729909085 1.0215367360523848 1.3316788853632855 1.3253956098510982 1.2155576225758364 1.266786379847058 1.2454252346852837 1.18855845028652 1.2909614520681971 1.0263573038795482 1.0 16.542641772396713 1.2286140211511452 24.033531851519303 1.013178211059163 1.242557019089075 0.5277473836640403 0.08401508987461688 99.06192692447335 239345.36343301437 0.07176405965688827 0.018867590112980247 16.92832628137614 -1.2286140211511452 0.22937880802991195 FSLS(ph)PSLGPQASR ddPTM_BT-474_Trastuzumab_2h_R1 3 FSLSPSLGPQASR 13 0 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 FSLS(0.873)PS(0.126)LGPQASR;FSLS(0.991)PS(0.009)LGPQASR;FS(0.002)LS(0.837)PS(0.161)LGPQASR 172.58 2.4284e-05 421310000.0 678388.0 894097.0 861576.0 800935.0 839201.0 865673.0 854704.0 733045.0 844360.0 848256.0 True False 674735.6343839923 923856.4781519497 982878.4118471587 902333.2888782851 946068.2730159726 805831.0630850495 813358.7022336469 787748.5402270865 636278.7918443333 794119.5758515006 0.8496650314412688 1.1633719986833693 1.2376957346672381 1.136268789131349 1.191342339094895 1.0147477629184385 1.024226989193053 0.9919772338849817 0.8012380140132909 1.0 19.598996734322952 2.0166719056677107 1.324492162032619 0.9169212316689926 1.1216323381618305 0.32500590823708764 0.11159366756952911 0.4962228495107885 1.6200589872052276 0.07867650745452855 0.037365268291941194 103.9134839098447 -2.0166719056677107 0.20471110649283786 FSLYFLAYEDKNDIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 FSLYFLAYEDKNDIPK 16 1 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 ; 248.2 2.024e-20 1099450000.0 2021810.0 1369340.0 1229530.0 1052590.0 1058480.0 1644930.0 1713200.0 1624630.0 2802400.0 1887030.0 False True 2010924.799604208 1414917.6541164902 1402637.136733656 1185847.7860755166 1193271.1538975132 1531219.8608487186 1630325.9709404493 1745868.140303979 2111786.070236109 1766598.1298323355 1.138303480370525 0.8009278568922618 0.7939763509580856 0.6712606370686373 0.6754627063998785 0.8667618486577044 0.9228618231896241 0.9882655884333331 1.1953969805439197 1.0 20.752542458654887 1.8123908696545918 1.6933042434586296 1.0899544407379225 0.8084943187503912 0.4009214066052642 0.13111916545820296 0.348599387184637 1.9175358162404896 0.09552357573203703 0.040427721102626525 64.92184742218673 -1.8123908696545918 -0.28146012198753123 FSMPGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSMPGFK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 94.407 0.033089 252230000.0 860000.0 848110.0 834120.0 760680.0 737180.0 1047200.0 882640.0 736600.0 1095400.0 960860.0 False True 855369.8555549821 876338.8286566795 951556.8456989897 856982.0100057232 831055.5033918153 974809.5288436441 839943.331187764 791568.8323790114 825453.3476079913 899537.0921663668 0.9509000384797739 0.9742108872310995 1.05782947027492 0.9526922430089485 0.9238701890439822 1.0836790804212395 0.933750635190504 0.8799735322449751 0.917642368276378 1.0 19.77882324627618 2.0201056256827026 24.98532995032402 0.9161172550823656 0.9898157682845478 0.19691976548635937 0.05409816677004514 287.99877290381477 357895.5859948056 0.019733893535129176 0.014572813204447484 104.73832533799825 -2.0201056256827026 0.07369851320218213 FSNSNRHEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSNSNRHEIR 10 1 M0QZN6;Q49A12;Q03923-2;Q03923 M0QZN6 ZNF85 Zinc finger protein 85 0 60.518 0.08898400000000001 651890000.0 163810.0 397800.0 331020.0 492870.0 476310.0 272790.0 262590.0 213620.0 103870.0 243040.0 False True 162928.0651610019 411040.5325248221 377624.73872258107 555267.2914649002 536965.2551894451 253932.66937858818 249887.51850878587 229561.40914038048 78272.63028669161 227528.9791229875 0.7160761050702622 1.806541452913741 1.6596775504295718 2.440424483972033 2.359986219158467 1.1160453949970415 1.0982667767067718 1.0089326204742226 0.3440116972721196 1.0 17.79569077963597 2.5613223294680787 5.876516977813031 0.9116597973419545 1.8241598445946487 0.46332174238193835 0.4794913787394075 0.21961344288577014 12.112294987002398 0.1639437470666773 0.15330688901552442 364.1852308577084 -2.5613223294680787 0.9125000472526943 FSPDDKYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSPDDKYSR 9 1 Q9NPE3 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 0 ; 79.97399999999998 0.023188 771780000.0 1695280.0 2144390.0 1928450.0 1975240.0 2030530.0 2021840.0 2162380.0 1983540.0 2649650.0 2174150.0 False True 1686152.800843315 2215764.7248388687 2199958.9976121136 2225305.181474078 2289105.959605772 1882074.959699424 2057777.4183062175 2131561.8270120337 1996679.2609909724 2035393.8856165383 0.8284159703725182 1.088617166680588 1.0808517275985268 1.09330444451051 1.1246501111073064 0.9246735843118283 1.010997150403102 1.047247828577595 0.9809792959981115 1.0 20.95687657847816 1.2328032848285764 24.797234219497177 0.9904896370371158 1.0311168267138684 0.021489236081116525 0.08465183530750842 562.6616982200967 2423285.3660333953 0.07193753276535693 0.019912545450122898 17.092409331955704 -1.2328032848285764 0.040627189676752606 FSPDGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSPDGNR 7 0 O75083;O75083-3;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 81.297 0.09188 0.0 418750.0 525900.0 555060.0 521060.0 476180.0 511380.0 577680.0 462620.0 544480.0 512800.0 False True 416495.49652749824 543404.2635867364 633207.6233319925 587026.142574514 536818.7004600163 476029.50425903616 549735.4114480965 497143.0535367613 410300.199658206 480072.6649698318 0.8675676140687393 1.1319208595658834 1.318982873919272 1.2227860184695232 1.1182030130662624 0.9915780234830706 1.145108754489578 1.0355579265651425 0.8546626992061497 1.0 18.872893266639988 1.4870024985024273 3.9332449511848973 0.9281866094691514 1.1211559557404471 0.2756303624626848 0.11936699901721627 0.2553714639674823 8.127584571129727 0.08359856530683459 0.0322053691174228 30.690396445697733 -1.4870024985024273 0.1929693462712957 FSPFLQTAEDNTQDEVAGAPADHHGPS(ph)DEEQGS(ph)PPEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSPFLQTAEDNTQDEVAGAPADHHGPSDEEQGSPPEDK 38 0 Q92766;Q92766-2;Q92766-5;Q92766-3;A0A087X055 Q92766 RREB1 Ras-responsive element-binding protein 1 2 FSPFLQTAEDNTQDEVAGAPADHHGPS(1)DEEQGS(1)PPEDK 108.91 6.6402e-06 355190000.0 53999.0 55183.0 52189.0 47192.0 44709.0 71341.0 68826.0 59511.0 92754.0 63301.0 True False 53708.27538385294 57019.732796172095 59536.757565080006 53166.502361295206 50402.42613899547 66409.36458865012 65496.62343914746 63952.01301073488 69896.01953992296 59261.07598528735 0.9062993624548262 0.962178493187135 1.0046519840419552 0.8971572229720359 0.8505148666471867 1.1206236721914644 1.1052216374776622 1.0791571355641962 1.1794591707595037 1.0 15.854797200660416 2.7261660978660305 24.99122588655735 1.1005061275938128 0.9292440823912214 0.7009297295792497 0.056341056933085505 423.8995866607812 854712.786731686 0.018091809070688636 0.017166184704338644 532.3118053703118 -2.7261660978660305 -0.17126204520259147 FSPFLQTAEDNTQDEVAGAPADHHGPS(ph)DEEQGSPPEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FSPFLQTAEDNTQDEVAGAPADHHGPSDEEQGSPPEDK 38 0 Q92766;Q92766-2;Q92766-5;Q92766-3;A0A087X055 Q92766 RREB1 Ras-responsive element-binding protein 1 1 FSPFLQTAEDNTQDEVAGAPADHHGPS(1)DEEQGSPPEDK 213.81 9.8677e-32 572010000.0 78030.0 125620.0 105660.0 107060.0 103810.0 138460.0 132480.0 114440.0 203320.0 139380.0 True False 77609.89514994802 129801.18576110652 120536.00958681639 120613.78502289102 117029.58816992363 128888.58609978121 126071.43627725335 122980.0939145451 153214.5103484177 130484.64907077857 0.5947818053896149 0.9947621171184564 0.9237562460043423 0.9243522964717995 0.8968839553413174 0.9877681935586797 0.9661782989420359 0.942487064879465 1.174195673127111 1.0 16.99352056466385 4.74092322909502 24.624859010260742 0.9696881624716998 0.5947816416432733 0.7100701496078727 0.07342716068195407 92.78667435756606 967015.1882408633 0.016949147936060113 0.1134292303624326 55071.033788526554 -4.74092322909502 -0.37490652082842646 FSPGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSPGDFWGR 9 0 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 0 ; 102.72 0.0082331 778340000.0 823010.0 928080.0 837540.0 887830.0 811560.0 863070.0 932420.0 831900.0 1028180.0 918920.0 False True 818579.0056050074 958970.5817637938 955458.3519718167 1000229.1869687398 914907.3555070165 803408.0023482477 887315.2824096981 893980.6023026055 774798.8159061385 860273.7388730072 0.9515331790522612 1.1147272530021473 1.1106445643958691 1.1626871096624196 1.063507246781218 0.933898090857387 1.0314336499125458 1.0391815557147608 0.9006421803845317 1.0 19.71443627247937 2.982424004208197 22.512495885647564 0.9928987681119871 1.0918963975226437 0.37029998290198407 0.06423061472752978 227.09805867580351 290883.25660739536 0.01944883838349026 0.02109539001120248 960.3377572736237 -2.982424004208197 0.0989976294106566 FSPPS(ph)PLPQAVFSTSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSPPSPLPQAVFSTSSR 17 0 Q99594;A0A1X7SBS4 Q99594 TEAD3 Transcriptional enhancer factor TEF-5 1 FSPPS(1)PLPQAVFSTSSR;FSPPS(1)PLPQAVFSTSSR;FSPPS(1)PLPQAVFSTSSR;FSPPS(1)PLPQAVFSTSSR 144.3 5.4209e-07 1370370000.0 652638.0 748381.0 678524.0 784147.0 660046.0 729230.0 697350.0 678011.0 901770.0 751810.0 True False 649124.2695228978 773290.4091791315 774054.2813636652 883419.9297995967 744098.9457008529 678820.0465227758 663616.5163643011 728607.6236900969 679540.8665989215 703828.8421430762 0.922275744691551 1.0986909925779014 1.0997763021571563 1.2551630125154953 1.0572157620525453 0.9644675038548411 0.9428663286143072 1.035205692156025 0.9654916449996555 1.0 19.42486510981481 2.992416969700924 24.903383943804908 0.9874045137785047 1.1024102544710261 0.3153124946152934 0.07825352798761888 414.05112622265096 1359789.7983343268 0.023622908175425908 0.027132832090390715 982.6909799239669 -2.992416969700924 0.11500574069252145 FSQMLQDKPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSQMLQDKPLR 11 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 80.52199999999998 0.022051 486060000.0 336370.0 366920.0 300970.0 367810.0 433440.0 414930.0 366450.0 414740.0 579270.0 451250.0 False True 334559.02129422006 379132.7103921762 343343.9599218634 414374.70828759123 488636.01479984284 386246.8657401585 348723.4135250567 445690.0048070477 436516.6703203219 422450.8386654384 0.7919478213160216 0.8974599543698191 0.812742995153043 0.980882674056559 1.1566695342432969 0.9143001513746507 0.8254769114122402 1.055010344434453 1.033295783479372 1.0 18.688423936683144 3.7065295956173108 7.878065586866467 0.994204888533251 0.840396680968064 0.4266517504439147 0.08546226844320191 0.2659659777765434 58.77248645602065 0.023716830945202824 0.03735408851116327 5087.7948996784135 -3.7065295956173108 -0.15380820756518698 FSSETWQNLGTLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSSETWQNLGTLHR 14 0 F8W9U3;Q96IU4;B4DQI4 F8W9U3 ABHD14B Alpha/beta hydrolase domain-containing protein 14B 0 ; 244.44 1.366e-17 1485830000.0 1114620.0 1344900.0 1355630.0 1363630.0 1271930.0 1424060.0 1380130.0 1207360.0 1563950.0 1452470.0 False True 1108619.009765925 1389664.1834907832 1546490.9206528098 1536265.4181838678 1433902.7461802426 1325618.084076662 1313367.8392914082 1297459.3340498535 1178535.478356323 1359772.1210778693 0.8152976462608607 1.0219831411083933 1.137316243420943 1.1297962315671652 1.0545169473276237 0.9748825288651058 0.9658734863973552 0.9541740957458213 0.8667154298046036 1.0 20.37493346540484 2.5384546920739517 2.8894379350390067 0.9452453142987033 1.0421968436190356 0.16678734170485865 0.08864189640323426 0.4668002188446094 7.72179186012553 0.03355281519434524 0.029859912368559845 345.50528273626645 -2.5384546920739517 0.09695152932033235 FSSS(ph)IENSDSPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSSSIENSDSPVR 13 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 FSS(0.004)S(0.996)IENSDSPVR;FSS(0.026)S(0.974)IENSDSPVR 259.97 5.6528e-24 399120000.0 832270.0 603340.0 576280.0 739630.0 884000.0 830080.0 514080.0 540500.0 878850.0 756200.0 True False 827789.1507938895 623421.8071732686 657415.2148844453 833267.0821640278 996572.1601214967 772698.5233981401 489211.9864236896 580834.8546033875 662269.1934866563 707938.6685846078 1.1692950075024162 0.8806155601299263 0.9286330074310325 1.1770328690054337 1.4077097414581945 1.0914766457707525 0.6910372439490815 0.8204592860630981 0.9354895033643816 1.0 19.43326485400848 2.308322383966961 9.248048295114536 0.8386797470681127 1.1079020193989573 0.3763591663240632 0.15490420097692842 0.3442710518570792 42.39330434427481 0.05839245143817678 0.04877145720976367 203.38662232002474 -2.308322383966961 0.2692222723308446 FSSVS(ph)SPQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSSVSSPQPR 10 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 FSS(0.292)VS(0.448)S(0.26)PQPR 128.57 0.00034212 505340000.0 749080.0 854130.0 750640.0 813400.0 739370.0 868460.0 861880.0 748880.0 840590.0 797210.0 True False 745047.0365106123 882559.2007175126 856323.5873201566 916376.3566002194 833524.3869106679 808425.4043349415 820187.5716986653 804765.2283355879 633437.8578289213 746331.3752741802 0.9982791306836108 1.1825299457540377 1.1473771781409678 1.2278411265553049 1.1168288169641207 1.0831990066583357 1.0989589864118368 1.0782947829842218 0.8487353993341293 1.0 19.50945681177441 1.402938412001089 4.284581366293351 0.9263286566066997 1.125253473910166 0.5696311030169073 0.06727612913266844 0.14513218961685168 4.355559474726206 0.04779447543951624 0.01684544460740381 25.289393380612147 -1.402938412001089 0.19892481730346634 FSSVSS(ph)PQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 FSSVSSPQPR 10 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 FSSVS(0.001)S(0.999)PQPR;FS(0.002)S(0.054)VS(0.02)S(0.923)PQPR;FS(0.002)S(0.054)VS(0.02)S(0.924)PQPR 142.04 3.823e-05 1721760000.0 2323380.0 2740530.0 2676350.0 2621120.0 2427900.0 2726690.0 2738350.0 2496220.0 2789360.0 2643940.0 True False 2310871.1802317873 2831746.88436463 3053156.816748781 2952953.523250509 2737078.6737092575 2538200.3382378523 2605885.5489871437 2682500.6119483216 2101959.6035090624 2475201.485609081 0.9336093217733115 1.1440470203450175 1.2334982968053128 1.1930154132579094 1.1058003518593298 1.0254520098646713 1.0527973436255047 1.0837504047829987 0.8492074749186838 1.0 21.23911453712559 1.8097598929995657 0.9521978679848073 0.9512457051691054 1.1269280928897638 0.32087986858699724 0.09129501749507664 0.6630219330413613 1.1155155345915173 0.08089700964166836 0.03467258322082199 64.52973669048939 -1.8097598929995657 0.17568238772065836 FSTELER ddPTM_BT-474_Trastuzumab_2h_R1 2 FSTELER 7 0 Q9UH65;E7EMB1 Q9UH65 SWAP70 Switch-associated protein 70 0 ; 138.24 0.006524899999999999 265693000.0 271760.0 352870.0 319810.0 326520.0 308770.0 337500.0 311760.0 292110.0 331510.0 339240.0 False True 270296.8743553742 364615.06463558035 364836.4681616483 367857.39852115 348090.0292768266 314169.4193895433 296678.97776114556 313908.7315045248 249813.80250641349 317589.4127620241 0.8510890586831775 1.1480705904664192 1.148767728082382 1.1582797906326703 1.0960378881951496 0.9892313999300617 0.9341589040420969 0.9884105668841761 0.7865936094463067 1.0 18.276803293686218 2.562909399365921 2.78496597809404 0.9333910775860328 1.0926005530558092 0.34429137711593094 0.09904962192341682 0.30731222356289656 4.673455080810809 0.03530935619818706 0.03178775886987399 365.51853076580704 -2.562909399365921 0.15920947546977637 FSTIASSYEECR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSTIASSYEECR 12 0 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;;; 213.03 3.1003e-08 386750000.0 463522.0 514370.0 461817.0 474956.0 435191.0 529330.0 504720.0 412008.0 679090.0 530430.0 False True 461026.4490541355 531490.4945067686 526836.8194146772 535085.3809016644 490609.99427085306 492738.6630087914 480304.7653823629 442754.1290942326 511737.36883979355 496577.50327602937 0.928407843715521 1.0703072350245646 1.060935736997791 1.077546560952903 0.9879827238128844 0.9922694035837059 0.9672302152507681 0.8916113319135234 1.0305286998781686 1.0 18.921659378224458 2.788661018434447 1.9660723421657471 0.9585130492171013 1.03727460587959 0.1715041529995106 0.0528778124888719 0.4205919267402341 3.212713965398837 0.01928118157019602 0.019676287855515128 614.6968936507741 -2.788661018434447 0.07876155666248874 FSTLTDDPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSTLTDDPSPR 11 0 Q14C86-2;Q14C86-6;Q14C86-4;Q14C86-5;Q14C86 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 FSTLTDDPS(1)PR 100.55 0.0025409000000000004 0.0 273830.0 289880.0 274780.0 304510.0 304790.0 318560.0 314010.0 255490.0 346220.0 306800.0 True False 272355.72970537335 299528.4805638394 313466.63556942454 343060.9347778861 343603.19986813434 296538.69700957945 298820.1366653105 274555.96115193266 260898.7201103143 287219.7613353049 0.9482485760700183 1.0428547087822593 1.0913825501145746 1.1944196777511813 1.1963076574909013 1.0324453151515418 1.0403884999976138 0.9559090219819927 0.9083592260413342 1.0 18.13179548752418 1.990134253794865 1.9001312776003252 0.9481981276336645 1.094725900511249 0.39378215453065213 0.07194841768150216 0.35937759941219116 2.415950342082903 0.04681629435373938 0.02371598412641225 97.75393617648574 -1.990134253794865 0.14652777287758456 FSTYSQS(ph)PPDTPSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 FSTYSQSPPDTPSLR 15 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 FSTYSQS(1)PPDTPSLR;FSTYS(0.01)QS(0.99)PPDTPSLR;FSTYS(0.002)QS(0.998)PPDTPSLR;FSTYS(0.022)QS(0.978)PPDTPSLR 306.72 4.1773e-45 3080810000.0 2321930.0 2726880.0 2493790.0 2466990.0 2487370.0 2501390.0 2515870.0 2303250.0 2657050.0 2469360.0 True False 2309428.986870677 2817642.552366228 2844893.9555887445 2779310.681053814 2804121.825702947 2328474.7969387006 2394167.7565432806 2475130.2106665205 2002255.6301458953 2311763.330674541 0.9989902323594765 1.218828292230104 1.2306164380411047 1.2022470657681246 1.2129796283621916 1.007228882836931 1.035645701605923 1.070667649159532 0.8661161822138879 1.0 21.14056227722362 2.732177844975682 24.70602170626201 1.0093951526397076 1.18014871079885 0.5479570858809828 0.07968245759106972 349.40709298450037 1352458.7846315715 0.02540807456739562 0.024493170754660704 539.7315990782316 -2.732177844975682 0.1707535581591424 FSVCVLGDQQHCDEAK ddPTM_BT-474_Trastuzumab_2h_R1 6 FSVCVLGDQQHCDEAK 16 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ;;;;; 274.17 3.1748e-35 8966120000.0 7723040.0 6560810.0 6107920.0 5916260.0 5521220.0 7571480.0 7247580.0 7053640.0 10049130.0 7410710.0 False True 7681460.010750415 6779182.594756604 6967862.04500764 6665257.909392204 6224314.64016517 7048081.408946792 6896986.86695574 7580018.434458165 7572656.562943122 6937752.143171971 1.1071972379858497 0.9771439588582841 1.0043400082929315 0.9607229794094113 0.897165899230206 1.0159027396047011 0.994124137707002 1.0925755602148894 1.09151442811286 1.0 22.726036869417477 1.764633194439533 12.426905813731594 1.0689949150748932 0.9894171531870691 0.23543533109345438 0.05488748431434978 0.4428398456154992 209.72213020873588 0.02549677618796679 0.014080019363249027 58.161178036546204 -1.764633194439533 -0.07957776188782406 FSVIRPQT(ph)PPPQTPSSCLTPVS(ph)PGTSDGRR ddPTM_BT-474_Trastuzumab_2h_R1 1 FSVIRPQTPPPQTPSSCLTPVSPGTSDGRR 30 2 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 2 FS(0.003)VIRPQT(0.996)PPPQT(0.051)PS(0.012)S(0.038)CLT(0.105)PVS(0.601)PGT(0.102)S(0.093)DGRR 80.07300000000002 0.0050051 132910000.0 28449.0 44863.0 38692.0 41304.0 42061.0 44755.0 46613.0 36621.0 44769.0 47922.0 True False 28295.833744981024 46356.23783474382 44139.49728310709 46533.08216500549 47417.219034921116 41661.19219193786 44358.151111047846 39353.84497767005 33736.27982386536 44863.576931911666 0.6307083759265318 1.0332711077651595 0.9838604119795554 1.0372129318985777 1.0569201628056775 0.9286194958365895 0.9887341613079382 0.8771891959795449 0.7519748118850638 1.0 15.453257029313965 -0.8725981355197424 7.331357132063136 1.000000000364645 0.9328175085652846 0.02509723707142608 0.13008035604036433 9.088861595848003e-10 1.2397243624534213e-10 0.12198863444123119 0.028752996666133946 0.13409169003655 0.8725981355197424 -0.06718249179936042 FSWNVWPSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FSWNVWPSSR 10 0 F5H365;Q15436;G3V4V1;G3V1W4;G3V3G5;G3V2R6;G3V5X8;G3V4Q2;A0A2R8YF30;G3V5K1;A0A2R8Y633;A0A2R8Y7S7;A0A2R8YFH5;Q15437;Q5QPE2 F5H365;A0A2R8YFH5 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B 0 ; 90.149 0.025656 1103950000.0 636730.0 704710.0 796660.0 718770.0 607550.0 655450.0 759050.0 640410.0 875110.0 686690.0 False True 633301.9164273541 728165.846343809 908822.8033071468 809766.2083028508 684917.8912690224 610140.2842633367 722331.851647413 688200.6461360872 659450.8663732226 642864.8562951126 0.985124494247717 1.132688836873575 1.4137073980755044 1.2596212102332138 1.0654150472873336 0.9490957209570133 1.1236138429004747 1.0705214935877019 1.0258001505537206 1.0 19.29415595904302 3.166357701012319 6.693407838914715 1.0448857350130987 1.2082037008080466 0.33531901787425655 0.10907429657679012 0.2615998446712538 19.421139302773 0.03356469692085962 0.040415500156971346 1466.7554176445858 -3.166357701012319 0.16331796579494795 FT(ph)GSFDDDPDPHRDPYGEEVDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 FT(0.5)GS(0.5)FDDDPDPHRDPYGEEVDRR;FT(0.554)GS(0.446)FDDDPDPHRDPYGEEVDRR;FT(0.5)GS(0.5)FDDDPDPHRDPYGEEVDRR;FT(0.602)GS(0.398)FDDDPDPHRDPYGEEVDRR;FT(0.5)GS(0.5)FDDDPDPHRDPYGEEVDRR 169.91 3.7863e-10 32344330000.0 869453.0 926794.0 870559.0 1127301.0 1001173.0 728691.0 820407.0 794514.0 895949.0 894935.0 True False 864771.9616533088 957641.7780311971 993126.1401655229 1270017.1910152233 1128666.447132714 678318.3063241068 780720.7791509111 853804.6691403444 675154.3740515162 837819.482107598 1.032169793280421 1.143016841315479 1.185370072401801 1.5158601800717255 1.3471475314628263 0.8096234580482015 0.9318484420855782 1.0190795122029563 0.8058470690525297 1.0 19.676279906520488 2.7405617588790694 24.999309000230685 0.9247037132080892 1.250830023910521 0.5964489393389301 0.13610172900245665 139.39912851739493 1741452.6848535698 0.046037674520523424 0.04664856092916854 550.2521635971121 -2.7405617588790694 0.3261263107024318 FTDDDKTDHLSWEWNLTIK ddPTM_BT-474_Trastuzumab_2h_R1 3 FTDDDKTDHLSWEWNLTIK 19 1 P52565;J3KRE2 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ;; 254.58 3.9695e-31 3475232000.0 3516210.0 4113100.0 4052420.0 3685860.0 4086770.0 5542960.0 5426670.0 5201190.0 6827930.0 5313240.0 False True 3497279.1160476548 4250002.047078542 4622965.511733918 4152489.4980802597 4607195.935316437 5159788.221924336 5164161.240207457 5589329.208907661 5145278.141074523 4974144.474306375 0.7030915837110535 0.8544186983373033 0.9293991229272794 0.8348148147947207 0.9262288136411423 1.0373217441867424 1.038200894019585 1.1236764910587105 1.0344046433818175 1.0 22.246016980646253 3.4321236423813497 0.6116418728354076 1.0799811871862235 0.7470019913646088 0.7614435891874423 0.05769067968341238 0.5038744132101329 0.36862911377099744 0.038555244899263916 0.09762457155417166 2704.7282828164825 -3.4321236423813497 -0.3329791958216147 FTDEESR ddPTM_BT-474_Trastuzumab_2h_R1 2 FTDEESR 7 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 192.56 0.0011853 1975490000.0 2292000.0 2917800.0 2505600.0 2642500.0 2634900.0 2502500.0 2578500.0 2439500.0 2955400.0 2699600.0 False True 2279660.1266651405 3014917.2091526557 2858366.7009343854 2977040.229058372 2970438.8967241286 2329508.0652513574 2453768.1041734465 2621547.877530001 2227081.27033107 2527309.2167561622 0.9020107676381275 1.1929356285980492 1.130992077258809 1.1779485507038374 1.17533655044266 0.9217344873380054 0.9709014187519536 1.037288140346671 0.8812064845747528 1.0 21.269170758414546 2.738248451740491 24.999998627247777 0.9712757800943479 1.1244192784108769 0.43567602510768777 0.08683943140984172 27.1369403907451 2173190.5790826385 0.026748406046343855 0.026674859762700474 547.328990012852 -2.738248451740491 0.15314349831652896 FTDEEVDELYR ddPTM_BT-474_Trastuzumab_2h_R1 6 FTDEEVDELYR 11 0 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 ;;;;; 325.04 2.7543999999999998e-46 22321780000.0 9221960.0 10262450.0 9360380.0 9898290.0 9463650.0 10487060.0 10652400.0 9683500.0 11624490.0 10739010.0 False True 9172309.992016071 10604029.444467967 10678240.142118523 11151412.499105463 10668789.732051814 9762114.226083867 10137102.715880249 10406131.94181666 8759790.199685602 10053637.187670972 0.9123374775513389 1.0547455857539751 1.0621270633491247 1.10919185673228 1.061187064233352 0.9710032343374588 1.008302023103801 1.0350614158404245 0.8713055818672224 1.0 23.261214195796047 2.7386429359245783 24.99963723916397 0.9865068514953227 1.0458239811921524 0.19178592558999086 0.06240342951857941 13.895275256839374 4220497.1019201595 0.019898814887160717 0.019865667622711622 547.8263730768276 -2.7386429359245783 0.059317129696829674 FTDEYQLFEELGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTDEYQLFEELGK 13 0 E9PF82;E9PBG7;Q13557;D6R938;Q13557-8;Q13557-6;Q13557-11;Q13557-12;Q13557-10;Q13557-3;Q13557-4;Q13557-9;Q13557-5 E9PF82;Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 0 238.87 2.0078e-16 54683000.0 76480.0 77518.0 67123.0 65184.0 60091.0 84010.0 87574.0 69071.0 110010.0 84916.0 False True 76068.24017772674 80098.1397693795 76573.33495642514 73436.28771653384 67743.23266273853 78202.58643826823 83337.71105483241 74225.42875543119 82899.50955847642 79496.58817975485 0.9568742749779896 1.0075670114076398 0.9632279410945316 0.9237665338603253 0.8521527050891788 0.9837225499720734 1.048318084625118 0.9336932622516491 1.0428058795558246 1.0 16.27860532394931 2.49600463318224 24.945425195035558 0.9978052883567401 0.9420601069406477 0.29899454088117705 0.0469770704488978 1137.8163506057017 1503084.7193419945 0.01616823178019519 0.015005149371447517 313.3319151314575 -2.49600463318224 -0.055745181416092415 FTDFDEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 FTDFDEVR 8 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4;E5RHK8;Q9UQ16-5;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4 P50570-2 DNM2;DNM3 Dynamin-2;Dynamin-3 0 ;;; 155.38 0.00095373 1105340000.0 1527590.0 1896550.0 1834080.0 1717320.0 1607500.0 1784620.0 1844830.0 1554690.0 2139340.0 1771850.0 False True 1519365.625171204 1959675.5202613173 2092302.521890859 1934732.5359192146 1812205.5966010236 1661253.4199436049 1755588.5249650162 1670708.8623558574 1612128.3226873088 1658769.0160428965 0.9159597330770932 1.181403499407201 1.2613585747352487 1.1663664544052357 1.0925002692202197 1.0014977395144715 1.0583682887645738 1.0071980162382368 0.9718823459417802 1.0 20.661681573996376 2.918875395546641 3.3455505586780583 1.0123977042389383 1.1435553542769863 0.3194843442603157 0.08479584499342345 0.2964422727804988 6.381140348560262 0.027382890491461788 0.030076293518443434 829.6127072277541 -2.918875395546641 0.13115765003804802 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALK ddPTM_BT-474_Trastuzumab_2h_R1 2 FTDKDQQPSGSEGEDDDAEAALK 23 1 Q9NXG2;H3BNW0 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 2 FTDKDQQPS(1)GS(1)EGEDDDAEAALK;FTDKDQQPS(1)GS(1)EGEDDDAEAALK 133.25 1.3494000000000003e-05 2419300000.0 4112700.0 2758500.0 2773500.0 2336600.0 2582300.0 4106500.0 3936700.0 3778700.0 5309100.0 3764100.0 True False 4090557.6801639227 2850315.004951536 3163984.6923058396 2632413.3204230014 2911140.5985087547 3822627.32066122 3746266.7813455923 4060685.781849806 4000743.443295219 3523871.9153918577 1.160813383226799 0.808858855652981 0.8978716503531036 0.7470229859731649 0.8261198671249188 1.084780438234555 1.0631109391298645 1.1523363729859786 1.1353260105228122 1.0 21.748730055901675 2.72561331876695 20.024528382500932 1.0990096875375799 0.876434137471641 0.44718599973903583 0.1098330726181555 45.96495240550283 71089.00280944418 0.03490481395786552 0.0332370274572288 531.6346987811874 -2.72561331876695 -0.22257555006593888 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALKK ddPTM_BT-474_Trastuzumab_2h_R1 6 FTDKDQQPSGSEGEDDDAEAALKK 24 2 Q9NXG2;H3BNW0 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 2 FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FT(0.001)DKDQQPS(0.999)GS(1)EGEDDDAEAALKK;FT(0.004)DKDQQPS(0.996)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK 123.31 6.11e-05 3088740000.0 4716350.0 2882520.0 2399350.0 2279560.0 2427420.0 4185030.0 3928110.0 3904220.0 7083040.0 3868990.0 True False 4690957.6956357425 2978462.9356798665 2737157.624475938 2568152.0622714455 2736537.548554438 3895728.726600958 3738092.312462581 4195572.721627449 5337519.6998733785 3622067.7457910096 1.295104902741487 0.8223101125430251 0.7556892406710577 0.7090292734738998 0.7555180467660789 1.075553799657103 1.0320326881810524 1.1583363471052897 1.4736112283034446 1.0 21.788382099489315 2.157898046729473 1.5054090735708618 1.225437755211417 0.8580698549344848 0.34761122575633596 0.19423612273751878 0.4268261690691345 1.8640141804920975 0.11786445840975779 0.065083261541723 143.84608511837064 -2.157898046729473 -0.3673679002769322 FTDKDQQPS(ph)GSEGEDDDAEAALKK ddPTM_BT-474_Trastuzumab_2h_R1 3 FTDKDQQPSGSEGEDDDAEAALKK 24 2 Q9NXG2;H3BNW0 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 1 FTDKDQQPS(0.971)GS(0.029)EGEDDDAEAALKK;FTDKDQQPS(0.994)GS(0.006)EGEDDDAEAALKK;FTDKDQQPS(0.996)GS(0.004)EGEDDDAEAALKK 257.94 3.3659e-44 2202830000.0 2028230.0 1286530.0 1167640.0 1127490.0 1005120.0 1680760.0 1797960.0 1686270.0 2727860.0 1726080.0 True False 2017310.2350375385 1329351.3733261912 1332033.5626911817 1270230.118395846 1133116.074187012 1564573.0172834634 1710985.8059258056 1812108.0301055599 2055615.4544512806 1615920.096628564 1.2483972686808154 0.8226591005952174 0.8243189533135459 0.7860723565763176 0.7012203614220354 0.9682242460798461 1.0588306992997893 1.121409427289332 1.2721021656578761 1.0 20.62392443136949 2.2449708395166548 2.455737359807263 1.1345596150439312 0.8645956344746523 0.35533532868463535 0.1498730334191084 0.2984782009100749 3.6842067630336333 0.06556250579742366 0.046041056816920965 175.7805583029302 -2.2449708395166548 -0.26996398056927895 FTDLFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTDLFEK 7 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 95.531 0.051697 0.0 249480.0 301630.0 321220.0 288330.0 312690.0 366380.0 329900.0 315170.0 335330.0 392330.0 False True 248136.82739983368 311669.5722108146 366444.98390570807 324832.5484368587 352509.21804116585 341053.012965751 313941.4766596158 338689.5858008323 252692.41469179047 367291.1635093881 0.6755861617495494 0.8485626749984367 0.9976961612808896 0.8844006627688875 0.9597541489237478 0.928563077061432 0.8547482429470192 0.9221283261070757 0.6879893659225798 1.0 18.486564661781806 4.685336988465869 3.5919756677291867 0.9030701744871398 0.6610893344840196 0.39435302499666325 0.0848524443173819 0.23124127785599144 5.211077182609489 0.01941789547800209 0.13602031756256738 48454.82043223101 -4.685336988465869 -0.24198084000312015 FTDLLQLVEFHQLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 FTDLLQLVEFHQLNR 15 0 Q14451;Q14451-3;Q14451-4 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ; 279.24 1.1896e-33 2540300000.0 1041550.0 1314910.0 1208900.0 1252830.0 1058550.0 1189150.0 1199840.0 1042870.0 1312620.0 1187190.0 False True 1035942.4105270837 1358675.9844701209 1379102.6120528325 1411438.1495444463 1193350.0679825915 1106946.8594580032 1141799.155366091 1120694.2549865583 989142.389206865 1111422.5177955055 0.9320869371819677 1.2224657704119941 1.240844584279494 1.2699384140101988 1.073714135601273 0.9959730361173718 1.0273313137751046 1.0083422254296621 0.8899787194961807 1.0 20.08397594451 2.9961738336123416 4.49555972915108 0.9928548577761559 1.17634296685429 0.45412563394531935 0.09336762573314132 0.18071913319124122 9.321582193556534 0.02852571632212266 0.03255568421155214 991.2286212930637 -2.9961738336123416 0.18348810907813407 FTDYQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTDYQLR 7 0 Q15911;Q15911-2;E7EVZ1;Q86UP3;Q86UP3-4;Q86UP3-2;Q86UP3-5 Q15911;E7EVZ1 ZFHX3;ZFHX4 Zinc finger homeobox protein 3;Zinc finger homeobox protein 4 0 90.986 0.038936 231450000.0 468000.0 530840.0 497090.0 411960.0 402460.0 422670.0 444050.0 399630.0 618400.0 457260.0 False True 465480.3399996882 548508.6885004437 567075.9512162643 464114.0937607891 453710.8954326897 393451.81775815797 422569.6050642696 429452.4198800216 466003.60613545915 428077.2753200189 1.0873745625756654 1.2813310122346335 1.3247046360784598 1.0841829747066813 1.05988082430563 0.9191140021717438 0.9871339345177063 1.0032123745858144 1.0885969263074935 1.0 18.70751172587144 3.4791257263527795 3.0240302912594865 1.0038381765657238 1.235249314375403 0.6524040623087293 0.07163820093954719 0.14731349122179543 2.7498416476970617 0.020415886851905082 0.031129625229428626 3013.878402519114 -3.4791257263527795 0.23141113780967926 FTEDLVGSVVHVLSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTEDLVGSVVHVLSHR 16 0 Q6P9B6;H3BUB0;H3BM75 Q6P9B6 TLDC1 TLD domain-containing protein 1 0 62.861 0.042439 61100000.0 50611.0 57164.0 54134.0 60129.0 56483.0 64952.0 53266.0 37119.0 68460.0 52866.0 False True 50338.51599941073 59066.66918363229 61755.59665883697 67741.32523483479 63675.775249029975 60462.021120561876 50689.32008411976 39889.00826646283 51588.95031700115 49492.04661914028 1.0171031395566312 1.1934578021832942 1.2477882988769746 1.3687315409712089 1.2865860193464773 1.2216512601679141 1.024191229637217 0.8059680492387715 1.0423684983972743 1.0 15.594909082013686 2.1402202475153933 3.7354129613272242 0.9254527047479094 1.2328460509942485 0.5998126984203758 0.10209853551251066 0.14404878944249175 3.852705586869767 0.042867074622479504 0.030407271696143132 138.10844883496537 -2.1402202475153933 0.30739334624633907 FTENDKEYQEYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FTENDKEYQEYLK 13 1 Q9BTL3;A0A3B3IU46 Q9BTL3 FAM103A1 RNMT-activating mini protein 0 ; 183.58 9.3303e-06 1401270000.0 1226610.0 1016280.0 968330.0 942730.0 858400.0 1303150.0 1260070.0 1139240.0 1780500.0 1267640.0 False True 1220006.0680491817 1050106.2654457672 1104662.4471247573 1062079.5213397148 967712.1518645836 1213066.307785138 1199115.6001651473 1224255.8737435038 1341719.632477658 1186738.1299187962 1.0280330911189832 0.8848677218432527 0.930839263755977 0.8949569366346969 0.8154386612072541 1.022185330699826 1.0104298243515595 1.0316141723930912 1.1305945251539753 1.0 20.178570188931054 2.5815066750155076 7.60942039361293 1.0397671843668237 0.9097446570128035 0.5418872304377855 0.059112093320282756 0.21575269206794367 13.977196432433892 0.018990472205954165 0.017867529786574337 381.51065797353124 -2.5815066750155076 -0.1300225273540202 FTENDSEKVDR ddPTM_BT-474_Trastuzumab_2h_R1 3 FTENDSEKVDR 11 1 A0A087WUB9;Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 0 ;; 103.85 0.0024428 327120000.0 866990.0 890770.0 864250.0 862130.0 838390.0 1113690.0 1111920.0 967930.0 1559060.0 1064110.0 False True 862322.2221716451 920418.740968163 985928.8878043352 971275.5696038204 945153.9969731468 1036703.2316442685 1058132.1816531073 1040161.851648949 1174850.553333682 996197.5887695943 0.8656136412021446 0.9239319100390255 0.9896921041758975 0.9749828553625038 0.9487615786548013 1.0406602498653934 1.0621709925638432 1.0441320711623634 1.179334869485824 1.0 19.926072393503567 3.5412845801698216 0.5005082767914599 1.0837517811541675 0.8608247810735616 0.6203213289773335 0.05034046471263646 1.031478564657302 0.4415437739926591 0.03805922233265732 0.12058771138042147 3477.6396611209025 -3.5412845801698216 -0.22292700008060584 FTEQVEAAVEALSSDPAQPMDENEFIDASR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTEQVEAAVEALSSDPAQPMDENEFIDASR 30 0 P35221-2;P35221;G3XAM7;P35221-3 P35221-2 CTNNA1 Catenin alpha-1 0 83.557 0.00146 9098200.0 5154.1 5333.7 4850.8 6375.0 5467.4 4711.2 5304.0 6118.3 6421.1 4864.4 False True 5126.350898274345 5511.228980210266 5533.750476090562 7182.074346356521 6163.6409821813 4385.525832971907 5047.425256752359 6574.878614097886 4838.705943331812 4553.949827377635 1.1256933195564702 1.2102085418415498 1.2151540280093818 1.5771087997454456 1.353471429379053 0.9630158432152262 1.1083620698691115 1.4437749345789326 1.0625294802859415 1.0 12.15290268149626 FTEWLHEVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTEWLHEVLK 10 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 0 77.66199999999998 0.026533 0.0 552410.0 432380.0 356780.0 326800.0 353450.0 564490.0 502670.0 521500.0 813410.0 577890.0 False True 549435.8859385203 446771.50692077045 407011.52281264705 368172.84649244114 398459.7624377184 525468.1349665293 478353.9317141231 560416.9781233427 612956.0046355816 541008.5654434798 1.015577055583459 0.8258122615018847 0.75231992395353 0.6805305313246558 0.7365128537495332 0.9712750749810929 0.8841892019251175 1.035874501661454 1.1329876157009169 1.0 19.045291909939934 2.0613135140499006 1.3423696339816518 1.0669766771886284 0.8020708302549924 0.5221880592705688 0.09861211754151392 0.35012192870606945 1.1817944081301888 0.07060174313738551 0.034854892200739486 115.16314433638424 -2.0613135140499006 -0.26490584693363606 FTFPDPPPLS(ph)PPVLGLHGVTFGYQGQKPLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTFPDPPPLSPPVLGLHGVTFGYQGQKPLFK 31 1 Q8NE71;Q8NE71-2;H0YGW7 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 FTFPDPPPLS(1)PPVLGLHGVTFGYQGQKPLFK 210.9 1.5211000000000002e-26 718600000.0 557980.0 592400.0 508350.0 502730.0 590440.0 660650.0 585260.0 621020.0 887600.0 637670.0 True False 554975.8976774066 612117.6758866371 579921.2613425903 566375.5664539314 665629.0341879372 614980.8205028205 556948.7378896843 667363.6658756624 668862.8732306489 596973.3546632461 0.9296493609676593 1.0253685044819696 0.9714357547326801 0.9487451358250738 1.1150062711985191 1.0301646056711065 0.9329540984351977 1.117911981602803 1.1204233287898684 1.0 19.187307014045693 3.442603740934425 0.5830458589606251 1.0635867847453393 0.9519604404111583 0.2185176551967174 0.06399128822077184 1.8347610408441137 1.1937700575856445 0.04451306400242714 0.11647865676371771 2770.790825377398 -3.442603740934425 -0.11162634433418095 FTGS(ph)FDDDPDPHRDPYGEEVDR ddPTM_BT-474_Trastuzumab_2h_R1 7 FTGSFDDDPDPHRDPYGEEVDR 22 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 FT(0.116)GS(0.884)FDDDPDPHRDPYGEEVDR;FT(0.102)GS(0.898)FDDDPDPHRDPYGEEVDR;FT(0.146)GS(0.854)FDDDPDPHRDPYGEEVDR;FT(0.112)GS(0.888)FDDDPDPHRDPYGEEVDR;FT(0.024)GS(0.976)FDDDPDPHRDPYGEEVDR;FT(0.037)GS(0.963)FDDDPDPHRDPYGEEVDR;FT(0.204)GS(0.796)FDDDPDPHRDPYGEEVDR 215.34 8.652699999999998e-26 5206880000.0 2821019.0 2898062.0 2428017.0 2669885.0 2292936.0 2349577.0 2232347.0 2100988.0 2299944.0 2334486.0 True False 2805830.947148676 2994522.241754529 2769860.688897908 3007892.1672505243 2584927.808303556 2187156.272299335 2124359.8472163193 2257774.3931608936 1733153.6188706541 2185497.104825984 1.283841072565541 1.370179001903991 1.2673824562757554 1.376296569146003 1.182764233636162 1.0007591716638229 0.9720259260583496 1.033071326507506 0.7930248981083199 1.0 21.059530036280535 2.8693383348618453 2.307212596618747 0.9624389639593498 1.3243802036127466 0.8644869441736979 0.06838898757342794 0.10227642875524129 1.0705674192582462 0.02240568735327479 0.024167756034473978 740.1816852042351 -2.8693383348618453 0.36194123965339675 FTGS(ph)FDDDPDPHRDPYGEEVDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 FT(0.021)GS(0.979)FDDDPDPHRDPYGEEVDRR;FT(0.036)GS(0.964)FDDDPDPHRDPYGEEVDRR;FT(0.006)GS(0.994)FDDDPDPHRDPYGEEVDRR;FT(0.169)GS(0.831)FDDDPDPHRDPYGEEVDRR 216.48 1.3264e-32 10991800000.0 1501490.0 1684370.0 1561900.0 1641440.0 1619830.0 1428210.0 1503550.0 1324500.0 1524080.0 1441130.0 True False 1493406.1446712199 1740433.2372268352 1781801.9437218297 1849246.1356993665 1826105.749015388 1329481.2043447108 1430817.5423812252 1423340.9156747211 1148490.9056256947 1349155.8495865325 1.1069189264745767 1.290016448255563 1.3206791078049935 1.370669027055765 1.3535172749501279 0.9854170700532106 1.0605279907578646 1.0549862835423527 0.8512662980912588 1.0 20.36362558213116 2.7338066795531373 24.968037325125913 1.004713912155467 1.2948203886056733 0.7468887917846259 0.08647562962450896 209.5540793893688 1100590.399152551 0.028430654917241033 0.02760524501058052 541.7596795608832 -2.7338066795531373 0.2901064764502064 FTGSFDDDPDPHRDPYGEEVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTGSFDDDPDPHRDPYGEEVDR 22 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 123.14 1.4843e-05 127500000.0 51474.0 71938.0 58298.0 46626.0 67973.0 69089.0 62017.0 56754.0 68076.0 52117.0 False True 51196.86970329904 74332.41284256075 66505.85166470015 52528.846819328515 76628.95864246428 64313.040048012306 59017.000782053336 60989.27167097259 51299.58197166476 48790.84844039148 1.0493129621602508 1.5234908844303823 1.3630804503420628 1.0766126947659826 1.5705600761602463 1.318137357799476 1.2095916072079644 1.2500145748743048 1.0514181165416348 1.0 15.574322950538386 1.3088809316797998 1.3260841146607547 0.9922923064639668 1.3222496120564216 0.3232096433711885 0.15784201529788722 0.4438482687338684 1.4989330692913705 0.13832413395960447 0.044045311433698116 20.364836687400345 -1.3088809316797998 0.32995730559245473 FTGSFDDDPDPHRDPYGEEVDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 ;;;; 238.28 2.1225e-37 8699940000.0 1981570.0 2460350.0 2365850.0 2496940.0 2386650.0 2516460.0 2536150.0 2203034.0 2693740.0 2406950.0 False True 1970901.4472931258 2542241.2624370186 2698941.115663157 2813052.347982976 2690575.7307171617 2342503.043309665 2413466.7354661543 2367435.583859983 2029903.8712667068 2253336.390306432 0.8746592190015191 1.128212047421512 1.1977533080607317 1.248394318790737 1.1940408641566693 1.0395709461697848 1.0710636662366892 1.0506356680895013 0.9008436911590727 1.0 21.10363127233397 1.7520578475596724 1.2765107364982518 0.9595269343287947 1.1302680711801816 0.2647138698061262 0.10142004106493971 0.5853178992421846 1.796174837613424 0.08622490795588045 0.03379994890503542 56.501222882382145 -1.7520578475596724 0.17074113685138692 FTIGDHSR ddPTM_BT-474_Trastuzumab_2h_R1 6 FTIGDHSR 8 0 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 ;;;;; 201.07 0.0001147 4249150000.0 2869780.0 3451390.0 3441310.0 3265760.0 2969190.0 3310160.0 3415820.0 2883690.0 3876110.0 3306620.0 False True 2854329.423342531 3566267.429740691 3925816.5355972624 3679204.881154085 3347298.7467320655 3081336.430478496 3250583.7369004204 3098885.5908811144 2920894.627712987 3095588.6806601905 0.9220635290389398 1.1520482201078859 1.2681970831990543 1.1885315720851608 1.0813125037071118 0.9953959483471638 1.0500696546697459 1.0010650349775219 0.9435667748630134 1.0 21.56178235870252 2.936722438763585 3.589871572744272 1.003118310370367 1.143572794506454 0.3540074055815672 0.08533312988356553 0.27088923478159765 6.87920716399638 0.027757347458791014 0.030652283337029112 864.4152871575897 -2.936722438763585 0.14045448413608708 FTISDHPQPIDPLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FTISDHPQPIDPLLK 15 0 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 136.81 2.055e-05 946633000.0 751537.0 993570.0 929290.0 959250.0 977920.0 1179870.0 1114180.0 1003650.0 1338340.0 1198420.0 False True 747490.80829561 1026640.3768242518 1060125.9544665196 1080690.9516458805 1102452.3154140431 1098308.3640152325 1060282.856819069 1078547.4594314331 1008524.0398372088 1121935.809581018 0.6662509583099564 0.9150615998322098 0.9449078507106561 0.9632377738700217 0.982634038417714 0.9789404657877806 0.9450477003804941 0.9613272436987388 0.8989142081255412 1.0 20.097558705299132 4.788094445006049 2.46290915362847 0.9591160376038553 0.5770380052984285 0.9193937433319638 0.025890974134024136 0.15711626406949394 1.0559720738565352 0.006262462207521243 0.1329693620263252 61389.54930678428 -4.788094445006049 -0.3820780323054268 FTLDCTHPVEDGIMDAANFEQFLQER ddPTM_BT-474_Trastuzumab_2h_R1 16 FTLDCTHPVEDGIMDAANFEQFLQER 26 0 P35268 P35268 RPL22 60S ribosomal protein L22 0 ;;;;;;;;;;;;;;; 333.1 4.8726e-95 9163126000.0 2269548.7 2668597.3 2559062.5999999996 2684316.7 2395238.2 2675886.5999999996 2778910.3 2498204.7 3146376.6 2765655.9 False True 2257329.7019697665 2757419.9479293665 2919356.370309133 3024150.9189908095 2700257.587080908 2490908.857701511 2644483.7923207497 2684633.420340423 2370994.2462164047 2589149.3726648595 0.8718422064797403 1.0649906788078882 1.1275349352688797 1.1680094439195017 1.042913018302104 0.9620568376623883 1.0213716598354994 1.036878539602096 0.9157425489808954 1.0 21.304046768624172 2.9897318459548456 24.375838754460418 0.9968686139351659 1.0687862307660572 0.1477820321547827 0.07880501785969694 709.3677960722165 1683995.4221772735 0.024196918346112865 0.027307825088658 976.6340145133064 -2.9897318459548456 0.07191761683089126 FTLRDEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 FTLRDEGK 8 1 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ;; 133.57 0.00083321 1533870000.0 1128120.0 1254690.0 1217480.0 1228470.0 1231000.0 1350640.0 1501230.0 1246280.0 2000880.0 1435000.0 False True 1122046.3272659145 1296451.5981738793 1388890.601474136 1383994.176042132 1387760.5532913601 1257273.435864572 1428609.7696444858 1339283.7420816103 1507789.9344183647 1343417.0714346908 0.8352181546030487 0.9650402884856486 1.0338491530339735 1.030204398522424 1.0330079785344048 0.9358772213024489 1.0634149290054906 0.996923271677152 1.1223543056573884 1.0 20.35747583647166 4.68420385635073 2.2996275096807084 1.0244929918230716 0.8010598411584104 0.6217239604579641 0.045451031027642884 0.3182163276319894 2.179633977538494 0.010802855399261383 0.1364148864187371 48328.56014215627 -4.68420385635073 -0.22343315066466118 FTLTQSEADADILFNFSHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTLTQSEADADILFNFSHFK 20 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 347.57 5.212399999999997e-95 549420000.0 490450.0 530020.0 484410.0 471380.0 490450.0 555700.0 580080.0 533220.0 725140.0 622140.0 False True 487809.4716941175 547661.3952961444 552610.7174328004 531056.6596683199 552905.9003750995 517285.7669770951 552019.314279206 573011.5840362972 546438.9633781806 582434.4925591481 0.8375353416153988 0.940296981536559 0.9487946275377588 0.9117877915075391 0.9493014363653095 0.8881441150646878 0.9477792289630694 0.9838215135895407 0.938198149936472 1.0 19.151736270856848 7.999999999995423 0.10019143142230653 1.0325005385320272 0.6154424030773289 0.4708653097805373 0.0320696733783092 119.20654696755027 0.8452037572745916 0.3996848593731021 6.838604699999605 99999999.99894616 -7.999999999995423 -0.4170581354546983 FTMDCVAPTIHVYEHHENR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTMDCVAPTIHVYEHHENR 19 0 M0R1B0;O43402 M0R1B0 EMC8 ER membrane protein complex subunit 8 0 72.421 0.0064943 241340000.0 42278.0 50902.0 52990.0 52630.0 46061.0 52059.0 50981.0 24341.0 59522.0 33055.0 False True 42050.37994552738 52596.242299091224 60450.53140266322 59292.95260372451 51926.59532506365 48460.28386370446 48514.854263667425 26157.449021093547 44853.60065393723 30945.4016001907 1.3588571409998518 1.6996464605186155 1.9534576472354035 1.916050512763716 1.6780068326773194 1.565993050916031 1.567756492239818 0.8452774133954801 1.4494431590657018 1.0 14.917437424482367 1.9071640840758401 5.194214272288878 1.0971081699095693 1.7060943198027976 0.6164153161820968 0.21096151986892892 0.14566700403550267 6.118022992248509 0.0972147284944416 0.05790136086794939 80.75400754299235 -1.9071640840758401 0.6089861498932283 FTPNGSSFSISWQS(ph)PPVTFT(ph)GIPVSPTHHPVGTGEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTPNGSSFSISWQSPPVTFTGIPVSPTHHPVGTGEQR 37 0 Q6ZNC4 Q6ZNC4 ZNF704 Zinc finger protein 704 2 FTPNGSSFSIS(0.003)WQS(0.994)PPVT(0.174)FT(0.424)GIPVS(0.185)PT(0.185)HHPVGT(0.035)GEQR 80.57300000000002 0.0035224 166610000.0 19232.0 27678.0 24028.0 29158.0 19228.0 25384.0 34419.0 24670.0 23146.0 25129.0 True False 19128.457048876084 28599.2454982957 27410.93354488003 32849.3998103629 21676.571826715084 23629.26382750866 32754.02147665146 26511.000671721707 17441.978440509916 23525.245705980713 0.8131033906274205 1.215683179497039 1.1651709779129524 1.396346725594953 0.9214174465010732 1.0044215530340457 1.392292428568538 1.1269170576603984 0.7414153568681208 1.0 14.52192217059885 1.2862203726188253 11.1116908945989 0.871005404721294 1.1435198996249136 0.23524145714022804 0.18521072294454236 0.6840391133886742 157.43087800447486 0.12067551563072566 0.04400948558191895 19.329488981035535 -1.2862203726188253 0.2725144949036197 FTPPAES(ph)GSPSKETLPPPAAPPKPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTPPAESGSPSKETLPPPAAPPKPGK 26 2 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 FT(0.012)PPAES(0.515)GS(0.46)PS(0.011)KET(0.002)LPPPAAPPKPGK 90.616 0.0054383 619680000.0 290600.0 206260.0 180340.0 156310.0 168910.0 350650.0 285380.0 288450.0 504160.0 327320.0 True False 289035.44188869506 213125.23941319712 205730.30445661987 176098.82997317443 190419.68729199297 326410.39084131375 271575.0791425316 309975.6037194211 379916.52339788654 306430.1573672493 0.9432343225353401 0.6955100021626512 0.6713774721919976 0.5746785221342433 0.6214130127661667 1.0652032216598009 0.8862544126721029 1.011570161313864 1.2398144055467935 1.0 18.225198761723146 2.735263233691579 24.98116259652809 1.0259352116057119 0.6922336617432395 0.6563250827672402 0.1224572759991986 187.17803861272742 1418065.9018413054 0.04012805431487753 0.039286636375245446 543.579705092389 -2.735263233691579 -0.33370154986247236 FTPPSTALS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FTPPSTALSPGK 12 0 A8MZI9;Q01196-7;Q01196-3;Q01196-4;Q01196;Q01196-9;Q01196-10;Q01196-2;Q01196-8;C9JWM1;H9KVB1;Q01196-6;Q01196-5 A8MZI9 RUNX1 Runt-related transcription factor 1 1 FTPPSTALS(1)PGK 169.79 4.4981e-05 144220000.0 179550.0 176530.0 161770.0 138840.0 130700.0 190360.0 184360.0 165070.0 252330.0 182570.0 True False 178583.32274988052 182405.69433536133 184545.8098699536 156417.12976441396 147343.8702804066 177200.86125923996 175441.80247640747 177388.36160847588 190146.65254877173 170918.2262939591 1.0448465714986905 1.0672103162458821 1.0797315995577714 0.9151576935709304 0.8620723106908014 1.0367581334156573 1.0264663183121754 1.037855151289652 1.1125007360054275 1.0 17.382946725060243 -0.025686043272294456 7.801976802878569 1.0000000082449862 1.0178628856398493 0.00611593351976325 0.07183115520175427 0.0 3.8678336637690494e-18 0.07390329733573266 0.01741917424688135 0.9425707460671455 0.025686043272294456 0.01786287739486303 FTPVASKFS(ph)PGAPGGSGSQPNQK ddPTM_BT-474_Trastuzumab_2h_R1 2 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 FTPVAS(0.003)KFS(0.997)PGAPGGSGSQPNQK;FTPVAS(0.028)KFS(0.972)PGAPGGSGSQPNQK 234.37 2.7677e-37 1254090000.0 1393410.0 1209370.0 1176080.0 1157530.0 1231670.0 1590600.0 1413170.0 1384320.0 2197500.0 1597140.0 True False 1385908.035382404 1249623.149370398 1341661.8413293853 1304073.179315776 1388515.8738199596 1480645.5658696545 1344809.5682663508 1487624.9878345276 1655955.5699913816 1495209.1578196504 0.9268991084855099 0.8357514016250597 0.8973071321244638 0.8721677315148382 0.9286432380100765 0.9902598296206045 0.8994123405633658 0.9949276862401096 1.1075076428813047 1.0 20.511915879729443 2.0932064566044994 0.7493960236046268 1.0440135056839261 0.8811514102612287 0.6041697061961246 0.04714934203581722 0.45095860564821294 0.47953796755285444 0.04008314379817543 0.022650842271507626 123.93856304827328 -2.0932064566044994 -0.16286209542269747 FTSGAFLS(ph)PSVSVQECR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTSGAFLSPSVSVQECR 17 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 FTSGAFLS(0.693)PS(0.307)VSVQECR 150.7 1.249e-08 0.0 66208.0 66823.0 60591.0 55590.0 64739.0 72828.0 66801.0 62734.0 79141.0 69552.0 True False 65851.54348440029 69047.16315964343 69121.68613358687 62627.68830022887 72983.12791188424 67793.57177867169 63569.5804253987 67415.52963679738 59637.76098506844 65113.131813536915 1.0113404416328484 1.0604184015809948 1.061562916855684 0.9618288439814943 1.1208664961913437 1.0411658891298716 0.976294315061385 1.0353599613339717 0.9159098836752596 1.0 15.990660910524607 1.762467595359538 1.3827861851200143 0.9706815464117797 1.0423856840415837 0.2583214503372012 0.047794805072464565 0.5651415888124143 2.052507191609092 0.03657111072415722 0.014440746011187285 57.87188059573026 -1.762467595359538 0.07170413762980399 FTVESPSTVTSGGGHHDPAGLGQPLHVPS(ph)SPEAAGQEEEGGGGEGQTPRPLEDTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTVESPSTVTSGGGHHDPAGLGQPLHVPSSPEAAGQEEEGGGGEGQTPRPLEDTTR 56 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 FTVESPSTVTSGGGHHDPAGLGQPLHVPS(0.5)S(0.5)PEAAGQEEEGGGGEGQTPRPLEDTTR 132.84 7.5125e-15 301500000.0 9672.4 14422.0 14837.0 16553.0 17412.0 22151.0 18840.0 10922.0 15159.0 11899.0 True False 9620.324873104664 14902.027551716896 16925.920634484144 18648.608102782673 19629.31499099038 20619.75350784527 17928.63722421087 11737.055100792228 11423.267570193104 11139.595632753573 0.8636152684769076 1.337753006751942 1.5194376162737122 1.6740830383421164 1.7621209636438349 1.851032495938842 1.6094513495171752 1.053633855997605 1.0254651916273743 1.0 13.443409243357618 1.6850003086096923 5.273835418736573 1.0220985228469823 1.5381015334836587 0.4281042497886105 0.2587220286182746 0.1519131700183591 9.63328419177619 0.1490169300854332 0.07331650170219996 48.41727116371433 -1.6850003086096923 0.5160030106366764 FTVTIGEDEREFDKENEVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTVTIGEDEREFDKENEVFR 20 2 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 0 180.08 3.1448e-17 168080000.0 159030.0 141260.0 123320.0 131920.0 133760.0 147680.0 179500.0 177730.0 226150.0 151460.0 False True 158173.80014989385 145961.7537065267 140682.38408334463 148621.0584739375 150793.54314236564 137471.2292013269 170816.89924341053 190993.11509465319 170418.36275474468 141793.69312857022 1.1155207023662972 1.0293952466149332 0.9921624931214824 1.048149993097201 1.063471440902769 0.9695158237868594 1.2046861568696414 1.3469789162023718 1.2018754783417573 1.0 17.113433838505863 2.1517770849629154 6.369205347932271 1.2338489350978967 1.0361777839580442 0.36661928832259516 0.09079705637240842 0.16401524328797668 9.796970586061681 0.03280086861331954 0.02417565554805461 141.83293335488693 -2.1517770849629154 -0.19767115113985256 FTYFSSLS(ph)PMAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FTYFSSLSPMAR 12 0 Q9H425 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 FTYFSSLS(1)PMAR 160.18 7.2111e-05 88091000.0 162010.0 172340.0 147790.0 145090.0 150120.0 176200.0 171170.0 155650.0 215360.0 185760.0 True False 161137.75616100297 178076.23271826992 168597.54738629152 163458.37912358728 169236.89216904851 164019.7087301854 162889.85316710063 167265.39337468508 162287.41367615206 173904.6377628626 0.926586882523118 1.0239878303941252 0.9694827553488949 0.9399311095226804 0.9731591655411798 0.9431589107694969 0.9366619272639423 0.9618224995400592 0.9331977327565475 1.0 17.40793688199945 3.993804474030386 24.967202544489233 0.9535383954443597 0.98064933398125 0.06824696213743786 0.028990869762451223 506.3137988597708 2040416.981232631 0.0066082359847366825 0.013590883027522255 9858.35547573496 -3.993804474030386 0.027110938536890283 FVDGEWYR ddPTM_BT-474_Trastuzumab_2h_R1 8 FVDGEWYR 8 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;;;;;; 172.97 0.00065247 7070270000.0 4517930.0 5735320.0 5577470.0 5591120.0 5130280.0 4948480.0 5408230.0 4724050.0 6212220.0 5023040.0 False True 4493605.966869216 5926216.659125843 6362729.295761691 6298955.218729552 5783590.748448096 4606403.225068941 5146613.2534550885 5076582.599239846 4681301.620483209 4702465.286759103 0.9555851437164291 1.2602361309954802 1.3530624699511238 1.3395006309702577 1.2299061015363912 0.9795719785618306 1.094450025595423 1.07955769785992 0.9954994529496083 1.0 22.164985863246947 2.766257408187107 12.84588182927275 1.0437718507344345 1.2426743425403362 0.4507666242877685 0.10801350660023808 1.9238435320810325 890.8551859215107 0.033959644736028624 0.03586736794546592 583.7910171711809 -2.766257408187107 0.1989024918059017 FVDGLMIHSGDPVNYYVDTAVR ddPTM_BT-474_Trastuzumab_2h_R1 8 FVDGLMIHSGDPVNYYVDTAVR 22 0 P23396;P23396-2;E9PL09;H0YEU2;E9PSF4 P23396 RPS3 40S ribosomal protein S3 0 ;;;;;;; 286.81 3.1861e-46 10698265000.0 4580275.0 5820780.0 5023308.0 5813398.0 5444223.0 5328524.0 5701769.0 4891644.0 5996641.0 5558388.0 False True 4555615.308316389 6014521.143564188 5730546.103024139 6549373.590738877 6137512.528612145 4960175.677876297 5425952.650597219 5256683.314544931 4518849.176422608 5203646.91906462 0.8754658759851606 1.1558280638774252 1.101255752389563 1.2586122180472916 1.179463676931292 0.9532114217249607 1.0427211405751105 1.0101921587504337 0.8684004212251382 1.0 22.31109164410168 2.7322774951003974 24.86266854236833 0.9840631930918098 1.1237540448016414 0.3155687807312437 0.1015772592827053 596.9080503319088 2361994.6915862556 0.03286024016274006 0.03166379399875754 539.855456263525 -2.7322774951003974 0.13969085170983164 FVDHVFDEQVIDSLTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVDHVFDEQVIDSLTVK 17 0 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 165.45 2.4678e-09 276470000.0 117020.0 132540.0 151140.0 135290.0 157180.0 224830.0 157610.0 134440.0 202470.0 157960.0 False True 116389.97732214413 136951.51377787822 172419.19826756994 152417.70012840375 177195.94132115037 209288.03129289212 149985.80217133093 144472.5954724874 152573.9814590012 147878.85756364002 0.7870630003484806 0.9261061116795605 1.1659489470519404 1.0306929782900873 1.1982506778894588 1.4152667578110314 1.0142477744445935 0.9769658614674736 1.031749798265385 1.0 17.174056277594232 4.445207808553622 3.5776059577888115 1.103288043853269 0.8046707710736049 0.40407864972087326 0.12517448350314891 0.23595617936577828 6.151739698610609 0.033832313246124374 0.1284419485726293 27874.54637915043 -4.445207808553622 -0.2986172727796642 FVDILGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVDILGLR 8 0 A0A087WUB9;Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 0 ; 124.08 0.0030712 92795000.0 257410.0 342220.0 317150.0 340070.0 331080.0 314950.0 328770.0 288100.0 319420.0 318150.0 False True 256024.13316093938 353610.5858236414 361801.96328278293 383122.8271318372 373241.07553509664 293178.24781255354 312866.1390766352 309599.48494215694 240703.22100871315 297845.39461808145 0.8595873489641555 1.187228650209838 1.214730762403465 1.28631442370665 1.2531369706544997 0.9843303039433849 1.050431347034304 1.0394637302992293 0.8081482049348453 1.0 18.18420412627296 2.7222196472095295 23.567223889950203 0.9900792514764349 1.1717371241146366 0.34300080182347803 0.12593308003422712 466.2245519522668 672395.3198370833 0.041578696652835145 0.03933459137827599 527.496578735744 -2.7222196472095295 0.18165787263820166 FVDILTNWYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVDILTNWYVR 11 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 170.47 3.6461e-05 183312000.0 184917.0 184391.0 178764.0 181849.0 147085.0 175269.0 162725.0 161332.0 197652.0 191290.0 False True 183921.42741821022 190528.3429682865 203932.4173554574 204871.06475460215 165815.40290890317 163153.06656884737 154853.37008013338 173371.41306729647 148943.31300110885 179081.70842839155 1.0270252000178672 1.063918502008663 1.1387674327275183 1.1440088803738593 0.9259203765928271 0.9110537754004425 0.8647079114841802 0.9681134638975235 0.8317058973148339 1.0 17.45025846107777 3.225586685985365 23.382586178922285 0.9151318776020212 1.0945604051454407 0.7167266940304533 0.05435483948799916 52.91217038961509 95361.94714121203 0.015435562748416919 0.018578619941979124 1681.0734376042537 -3.225586685985365 0.17942852754341954 FVEDTKNEVHER ddPTM_BT-474_Trastuzumab_2h_R1 2 FVEDTKNEVHER 12 1 O75828 O75828 CBR3 Carbonyl reductase [NADPH] 3 0 ; 180.28 1.1799000000000003e-05 398880000.0 402680.0 404810.0 383680.0 404130.0 360160.0 482340.0 488650.0 428440.0 607110.0 515590.0 False True 400512.0156219541 418283.8561371874 437698.8089936562 455292.81656361785 406024.2411644327 448996.97110622935 465012.13267572445 460412.3683742371 457495.8753572093 482684.6047811929 0.8297592499423331 0.8665779931531084 0.9068008481274654 0.9432511666080751 0.8411791823119958 0.9302077726505601 0.9633871229154292 0.9538575786624641 0.9478153453114545 1.0 18.880721287214715 7.999999999995355 0.1368624292323163 1.0231900079104614 0.3920522396242089 0.6891882756730117 0.02960664450964013 44.84598798412064 0.41058924143616155 0.1372074435280752 5.518433835568853 99999999.99893041 -7.999999999995355 -0.6311377682862526 FVEGLPINDFSR ddPTM_BT-474_Trastuzumab_2h_R1 4 FVEGLPINDFSR 12 0 A0A5K1VW95;P40925;P40925-3;B9A041;P40925-2;B8ZZ51 A0A5K1VW95 MDH1 Malate dehydrogenase, cytoplasmic 0 ;;; 197.94 4.3995e-07 541657000.0 542625.0 690803.0 585556.0 639022.0 593308.0 606817.0 616722.0 514987.0 683633.0 596348.0 False True 539703.5672913045 713795.9602557678 667997.1950560082 719922.1196795977 668862.2569879689 564869.169083569 586888.8007531734 553417.9449909991 515160.80736287514 558288.5600807911 0.9667107762573585 1.2785430533494595 1.1965088357879676 1.2895161591264135 1.198058324697136 1.0117871105971177 1.0512284197051136 0.9912758106863461 0.9227500690473133 1.0 19.090651468520633 2.7234603950461436 5.349354247195603 0.9980326331514547 1.1979772837808644 0.5391512940790395 0.08773087718592258 0.1340957601996133 12.852729816435874 0.02757207014708634 0.027044622900427143 529.005752977499 -2.7234603950461436 0.1999446506294097 FVEIHFNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVEIHFNEK 9 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 72.643 0.04617 116600000.0 132790.0 154840.0 133200.0 126150.0 136730.0 166480.0 153530.0 135380.0 178410.0 157710.0 False True 132075.07339435592 159993.7557972434 151953.40220484528 142120.57706554927 154141.75503779677 154971.62945176655 146103.16735844465 145482.7430457108 134443.2460715188 147644.81277767586 0.8945459776716645 1.0836395318416137 1.029182125305393 0.9625842885489989 1.0440038639888014 1.0496246128546585 0.9895584180017715 0.9853562770591833 0.9105856382097485 1.0 17.171771145426916 1.636986306844923 2.6845379194376116 0.9548930782451601 1.0133643374106143 0.12246744051448732 0.053670877989848785 0.40947945553746573 6.801086577659598 0.03405477892098918 0.013843613532627082 43.34972101546787 -1.636986306844923 0.05847125916545415 FVESILSNNTTDDHCQEFVNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVESILSNNTTDDHCQEFVNQK 22 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 190.63 1.7124e-17 199120000.0 57502.0 57887.0 52494.0 62672.0 52342.0 64850.0 74885.0 58331.0 72447.0 82085.0 False True 57192.41562107279 59813.73380156956 59884.69891397251 70606.2687740951 59007.443444659955 60367.072140479744 71262.52646151966 62683.955418816324 54593.407590064046 76846.26502349581 0.7442445719851988 0.7783557702287998 0.7792792388239391 0.9187989650831717 0.7678635185017564 0.7855563588161697 0.927338842554431 0.8157059474478122 0.7104236955871839 1.0 16.229687521534125 -2.3810224642845563 2.3186452481096698 2.456619026316765 0.8095229923956898 0.43893460998121037 0.06643642160806339 3553422.9932138417 402783.90479273547 27523011.448084455 0.015881356644044005 0.004158890976886412 2.3810224642845563 -1.6470960339210752 FVEVGR ddPTM_BT-474_Trastuzumab_2h_R1 6 FVEVGR 6 0 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 ;;;;; 159.65 0.021057 2836540000.0 2583700.0 2738160.0 2590650.0 2691340.0 2371800.0 2487680.0 2689400.0 2249510.0 2682440.0 2519340.0 False True 2569789.6462760577 2829298.000347326 2955391.001666533 3032063.368050691 2673834.671240005 2315712.5369688286 2559303.4474943047 2417379.858980325 2021388.6048544608 2358553.564284508 1.0895617064586915 1.1995903095826543 1.2530523141046752 1.2855605291162846 1.1336756187053743 0.9818358896043662 1.0851156769342638 1.0249416827273383 0.857045875685961 1.0 21.169470935105874 2.902902839640493 3.763061693396568 1.0024542530730787 1.2101883596035838 0.6706515410405862 0.0719219327225104 0.1530055145860181 3.95640725520914 0.023337660972131156 0.025322393678185704 799.6553361057665 -2.902902839640493 0.20773410653050517 FVEVLDER ddPTM_BT-474_Trastuzumab_2h_R1 4 FVEVLDER 8 0 Q96HU1;Q96HU1-2 Q96HU1 SGSM3 Small G protein signaling modulator 3 0 ;;; 101.64 0.012211 152033000.0 260809.0 324236.0 281369.0 306636.0 281278.0 312261.0 284039.0 247743.0 335609.0 302767.0 False True 259404.83332260372 335027.9992551991 320983.30949680944 345456.0861599028 317097.08603467705 290675.13205332845 270298.94843564904 266230.84067346365 252902.658880199 283444.1508481303 0.915188521429723 1.1819894616019349 1.132439348409037 1.2187800846347279 1.1187286281472009 1.0255111322056263 0.9536233068378805 0.9392708929672373 0.8922486427165841 1.0 18.112704972454747 2.4855493519667613 2.3899309658834507 0.9397880402173827 1.1242395083476766 0.49750680063626385 0.07882236273474759 0.22909484688143927 2.6444235407197816 0.02997006247950197 0.025279452343775936 305.8787818547951 -2.4855493519667613 0.1844514681302939 FVEWTR ddPTM_BT-474_Trastuzumab_2h_R1 3 FVEWTR 6 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237 A0A2R8YD12 SERPINB6 Serpin B6 0 ;; 118.01 0.05172 468867000.0 430162.0 652345.0 693816.0 598204.0 433232.0 486022.0 610173.0 455388.0 745351.0 514509.0 False True 427846.0555874915 674057.9089741193 791499.26204322 673936.5650647628 488401.52723275556 452424.443112725 580656.6009027817 489371.3649734093 561669.233241705 481672.59512668394 0.8882507743147903 1.3994109604612994 1.643230837816399 1.3991590384906825 1.013969929313296 0.9392779404311628 1.2055005968318877 1.015983408490783 1.1660809415449125 1.0 18.8776933182298 3.239244019778839 24.997811149928136 1.059542063241523 1.3594855086788116 0.3324624265308779 0.18983650631612348 20.29793273473029 742443.0942158063 0.05461874628384124 0.06976059728202873 1734.7784548747968 -3.239244019778839 0.2999434454372887 FVFDRPLPVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVFDRPLPVSR 11 1 P25786;P25786-2;F5GX11;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 ; 213.38 2.4913000000000003e-09 6412000000.0 3563500.0 4506100.0 4240000.0 4239000.0 3553000.0 3893900.0 4109800.0 3788200.0 4935700.0 3830600.0 False True 3544314.5119420737 4656082.8145050295 4836955.14525933 4775656.96536554 4005453.489719093 3624723.8582546487 3910993.273039372 4070894.7200898333 3719362.869991564 3586127.828458344 0.9883402604378869 1.2983594108263155 1.3487960766135627 1.3317029380457328 1.1169299259031193 1.0107625917542646 1.090589477040668 1.1351783636334813 1.0371528980299893 1.0 21.77399548368665 3.085267863702278 6.011315170855457 1.0711673578689642 1.2525183670081694 0.4278233725966867 0.10095433340314307 0.20639795629049085 11.571886374989646 0.029894189726616588 0.03586774844607538 1216.9363499685767 -3.085267863702278 0.1813510091392052 FVFLLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVFLLDR 7 0 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 0 ; 95.62 0.031016 73131000.0 172152.0 212274.0 187049.0 189740.0 146350.0 181978.0 162688.0 150554.0 263810.0 170504.0 False True 171225.15275988527 219339.41176765712 213383.87334094636 213761.06454551936 164986.80501558952 169398.28919013427 154818.1599114871 161789.10397772136 198797.56037289026 159622.28874418134 1.0726894978576536 1.3741151908877929 1.3368049977213774 1.3391680211283246 1.0336075639161246 1.0612445825884658 0.9699031452907334 1.0135746408010267 1.2454248209126557 1.0 17.284302589753732 3.2335629973285154 24.988417651622978 1.0464227042391492 1.291375249947526 0.5314114089633806 0.10396752343332433 87.9557108524887 439784.2124702776 0.029325475221320372 0.0360955590097247 1712.233529651565 -3.2335629973285154 0.24495254570837677 FVFSLVDAMNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVFSLVDAMNGK 12 0 P40926;G3XAL0;P40926-2 P40926 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase 0 164.97 0.00012995 48084000.0 81515.0 99304.0 94305.0 103420.0 109220.0 161500.0 98991.0 81672.0 135040.0 106520.0 False True 81076.13229716786 102609.2736094643 107582.32428624551 116512.96139610848 123128.51960234137 150335.88513010766 94202.4271476571 87766.77936201266 101761.20144329291 99721.80240363978 0.8130231337877286 1.0289552649092424 1.0788245067090647 1.1683800190905478 1.234720157824256 1.5075528270297338 0.9446522713895389 0.8801162558891859 1.0204508842649909 1.0 16.6056213383445 2.077940118195882 24.999999999999652 0.9431309038890607 1.1440608239957823 0.2081486430327767 0.16769371635740696 50.218942667334304 16105.631777729615 0.06702561101372574 0.04950169828453949 119.65755325685137 -2.077940118195882 0.20092992010672162 FVGHTK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVGHTK 6 0 P63244;J3KPE3;D6RHH4;H0YAF8;D6R9L0;H0Y8W2;D6R9Z1;D6RFX4;E9PD14;D6RFZ9;D6RAU2;H0YAM7 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 71.995 0.08676299999999999 1908100000.0 2435800.0 2485700.0 2299900.0 2143900.0 2205800.0 2092400.0 2535700.0 2643000.0 2941300.0 2629500.0 False True 2422685.9234428196 2568435.021862618 2623705.928910838 2415317.520180979 2486695.5551990913 1947757.3129797962 2413038.503685324 2840234.0808820617 2216456.026400752 2461683.0587717867 0.9841583443530606 1.043365437605966 1.0658179246762536 0.9811651063585979 1.0101607298056412 0.7912299294741847 0.9802393102909304 1.1537773194487297 0.9003823699004588 1.0 21.231213596389303 -1.2508740879257991 3.7998339785098607 1.0000008926047264 0.9993730779282151 0.0 0.09184723106164608 1574976214863.0935 310290293191.9154 12784315.97297295 0.022442934478143134 0.05612106604754129 1.2508740879257991 -0.0006278146765112957 FVHFIDAPSLALIMPIVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVHFIDAPSLALIMPIVQR 19 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ; 189.42 1.4043e-14 244430000.0 188058.0 210310.0 214830.0 210628.0 233322.0 240080.0 215544.0 204811.0 273490.0 232970.0 False True 187045.5166232079 217310.04121492046 245076.19666416594 237293.48320382452 263034.1736921582 223483.83468753073 205117.31326195903 220095.03682918515 206092.05407824492 218101.65514434822 0.8576070479585028 0.9963704359377565 1.1236787565961612 1.0879948758150157 1.2060164033054763 1.0246773897227894 0.9404665596242466 1.009139690771799 0.944935763746704 1.0 17.73464119287711 -0.7543059101359618 7.451150245414458 1.0000000084389598 1.026248547171623 0.0019726893307996374 0.09445628265768545 0.0 0.0 0.0956449019518261 0.022543719585352902 0.1760735375472473 0.7543059101359618 0.026248538732663196 FVHGPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVHGPSPR 8 0 Q5T200;Q5T200-2;Q5T9K0 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 FVHGPS(1)PR;FVHGPS(1)PR 81.017 0.015427 347860000.0 199728.0 217884.0 182637.0 196598.0 201984.0 244431.0 222467.0 196000.0 328150.0 235855.0 True False 198652.68663986714 225136.1372263407 208350.7020907382 221487.2866423527 227705.46514703683 227534.06029868324 211705.42130353063 210626.51526783363 247281.82948471984 220802.53197437545 0.899684821834023 1.0196266103165348 0.9436064895982157 1.0031012084048778 1.0312629257958983 1.0304866446236631 0.9587997900680751 0.9539134963011984 1.1199229794766001 1.0 17.752397190239176 5.554928757956509 1.7149261356495271 1.0014764065152397 4.781498122636015e-15 0.28583244802968666 0.048979296551024176 21.13207177370105 6.993332083812251 0.01258554766646196 67.44893048829951 358863.0616084642 -5.554928757956509 -1.0014764065152348 FVHLLDQSDQDFQEELDLMK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVHLLDQSDQDFQEELDLMK 20 0 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 254.62 3.9119e-36 342010000.0 198500.0 175072.0 159786.0 174244.0 161611.0 218750.0 188768.0 174293.0 249357.0 210450.0 False True 197431.29805542345 180899.16568674092 182282.47991519052 196303.27253435997 182191.20290655567 203628.3273821118 179636.5706762123 187299.62870192097 187906.30856261242 197018.90082469003 1.0020931861309101 0.9181817832173743 0.9252030092147749 0.9963677175776814 0.9247397185951807 1.0335471699910808 0.911773286340965 0.9506683263276482 0.953747624091223 1.0 17.5879745143623 3.7809435127108753 24.99294053597661 0.9621211833425123 0.9454615903768802 0.03151199221588008 0.040254948034378214 1992.218504333786 1174792.7482003174 0.00984242366726181 0.017742903133976425 6038.700808252927 -3.7809435127108753 -0.01665959296563213 FVHSENQHLVSPEALDFLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 FVHSENQHLVSPEALDFLDK 20 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2;A0A087WY74 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ;; 130.85 8.907000000000001e-06 1327289000.0 1430968.0 1525750.0 1456000.0 1506700.0 1482140.0 1733810.0 1650800.0 1039368.0 2221470.0 1550880.0 False True 1423263.8272834916 1576533.6664146497 1660992.1442211277 1697448.0655145678 1670881.7436679562 1613955.7956497313 1570944.4973315962 1116930.9179637632 1674018.4846729257 1451901.5106248315 0.9802757396891091 1.0858406406204386 1.1440115820985084 1.1691206690625071 1.1508230630250433 1.1116152051905772 1.081991089502713 0.7692883503393337 1.1529834995160968 1.0 20.469512161120406 1.9722722305178921 24.467537988550735 0.9427518814488199 1.1111859772618482 0.2432862503237163 0.10067243166918334 570.5480475918788 503462.190555623 0.04029235040145014 0.026085431760708162 93.81498868377989 -1.9722722305178921 0.16843409581302826 FVIFPIEYHDIWQMYK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVIFPIEYHDIWQMYK 16 0 P31350;P31350-2;A0A286YFD6;C9JXC1 P31350 RRM2 Ribonucleoside-diphosphate reductase subunit M2 0 109.83 0.00094214 97570000.0 165520.0 225830.0 189790.0 209350.0 175920.0 202380.0 221830.0 179870.0 336970.0 230880.0 False True 164628.85871100065 233346.61503288202 216510.78231574746 235853.6885348611 198322.369240468 188389.9469512764 211099.23542710705 193292.81276135324 253928.25866666457 216145.04073368714 0.761659199545736 1.0795834789491607 1.001692111837583 1.0911825121421919 0.9175430006040318 0.8715904205426213 0.976655465749052 0.8942736419269032 1.1748049263805698 1.0 17.721640209625082 1.2457224355131677 24.999163533156043 1.087402474619163 0.9547038968529362 0.23002664669842054 0.10069576126453905 217.3318592848779 758641.493154753 0.06807775687814328 0.023720686056751296 17.608502993732394 -1.2457224355131677 -0.13269857776622684 FVIHCNSPVWGADK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVIHCNSPVWGADK 14 0 O75367-2;O75367-3;O75367;B4DJC3 O75367-2 H2AFY Core histone macro-H2A.1;Histone H2A 0 ; 212.87 1.8256e-09 1237690000.0 1740470.0 2050370.0 2469400.0 1612950.0 1676100.0 2685000.0 2288900.0 2401800.0 4072400.0 2336900.0 False True 1731099.5029043965 2118615.325975162 2817070.055590423 1817149.3046205088 1889541.3999769704 2499392.269810149 2178177.16255288 2581034.51209328 3068811.5873642373 2187757.0412792508 0.7912667952800498 0.9683960723245304 1.2876521489530632 0.8305992257522179 0.8636888668734878 1.1424450808069049 0.9956211414039061 1.1797628636971806 1.4027204709942591 1.0 21.061021099591812 1.6826745031277102 3.730170590676971 1.2275684258577406 0.9884270628134657 0.2504983596232949 0.16608611673268292 0.24678853562494757 8.020041968116328 0.09396511395112873 0.043570061839297895 48.15867206710831 -1.6826745031277102 -0.2391413630442749 FVIKPIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVIKPIDK 8 1 P15311;E7EQR4;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y7M3;P35241-4;P26038 P15311;A0A2R8Y5S7 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 93.551 0.010499 0.0 2026700.0 1660800.0 1717900.0 1495900.0 1528300.0 2144300.0 2080400.0 1804000.0 2695400.0 2038400.0 False True 2015788.472387538 1716078.7240252008 1959765.3877455199 1685280.7866219156 1722919.9460562035 1996069.588139254 1979763.1041002267 1938623.6405263846 2031154.786509567 1908307.5668379602 1.0563226323771657 0.8992673685556465 1.0269651610682573 0.8831284934924841 0.9028523368017969 1.0459894530768508 1.037444455235624 1.0158863666503497 1.0643749581075985 1.0 20.863862282277548 2.7228096761725435 24.89454784047558 1.032609354214813 0.9508316101816315 0.34920529162943403 0.05387370121579168 833.3914899357725 1317183.6390985735 0.016700606218033005 0.01579495767485329 528.2137183518097 -2.7228096761725435 -0.08177774403318139 FVIKPIDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVIKPIDKK 9 2 P15311;E7EQR4;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y7M3;P35241-4;P26038 P15311;A0A2R8Y5S7 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 ; 78.556 0.016556 1839850000.0 2230210.0 2092550.0 1801570.0 1853460.0 2174690.0 3252960.0 2835510.0 2558940.0 4625300.0 3027420.0 False True 2218202.7971596243 2162199.261776812 2055215.396472842 2088107.8459604643 2451623.8811025084 3028090.531844179 2698345.548599901 2749901.096834032 3485456.790844663 2834207.4636953347 0.7826536432401661 0.7628937858196393 0.7251464202247154 0.7367519395485324 0.8650121462548119 1.0684082131009751 0.9520635250468601 0.9702539888341902 1.2297818121967006 1.0 21.434513936574298 2.9541185463925017 3.1044401687491834 1.0285361537583806 0.751570341437649 0.7748364090845853 0.0742603857886841 0.1258308589724277 2.4280621148029264 0.023816676986672274 0.02675074316169926 899.7431447422163 -2.9541185463925017 -0.2769658123207316 FVINYDYPNSSEDYIHR ddPTM_BT-474_Trastuzumab_2h_R1 6 FVINYDYPNSSEDYIHR 17 0 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;;;; 223.06 3.1631e-15 16096710000.0 4023580.0 5154400.0 4926630.0 5276750.0 5005480.0 4755600.0 4917660.0 4430460.0 5468510.0 5033370.0 False True 4001917.492341764 5325961.088099399 5620256.68096438 5944786.008962629 5642898.2081956435 4426856.565478266 4679773.998514475 4761083.422620029 4120868.984779781 4712136.017315143 0.8492788573242324 1.1302647182782295 1.1927195353258628 1.2615904946542311 1.1975244745610771 0.9394585702134673 0.9931321976526674 1.0103875196142524 0.874522503093565 1.0 22.16794975294795 2.732503984223232 24.963161949209027 0.970453854625097 1.1377060559507997 0.35573714466710193 0.10878567123959294 561.4830660719781 2314216.1891338937 0.03614587870891294 0.034877269943997216 540.1370699664186 -2.732503984223232 0.16725220132570262 FVINYDYPNSSEDYVHR ddPTM_BT-474_Trastuzumab_2h_R1 6 FVINYDYPNSSEDYVHR 17 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;;; 318.49 9.347899999999998e-51 6437456000.0 2865677.0 3510587.0 3077540.0 3531886.0 3397684.0 3336433.0 3503739.0 3011233.0 3580305.0 3302541.0 False True 2850248.5134386476 3627434.7661003456 3510830.8815427846 3979022.4054675703 3830358.9177491483 3105793.239828485 3334249.75898723 3235946.4971913486 2697986.806379063 3091770.0059324023 0.9218824517896448 1.173255047801138 1.1355407662297972 1.286972316127245 1.2388886981889216 1.0045356652885484 1.078427487358233 1.0466323468376704 0.8726350282208059 1.0 21.56000157175575 2.7194867120028823 24.16840543139118 1.0133840737550863 1.159188108703019 0.3464787862236772 0.10254553152450611 657.2513492910563 832797.118440016 0.033996420977720286 0.03210404975097311 524.1875623304044 -2.7194867120028823 0.1458040349479326 FVKEPAFEDITLESER ddPTM_BT-474_Trastuzumab_2h_R1 3 FVKEPAFEDITLESER 16 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;; 184.01 1.7252e-09 1667310000.0 513160.0 618390.0 581660.0 550450.0 548700.0 596600.0 661030.0 580420.0 780850.0 642260.0 False True 510397.2035774355 638972.7373253512 663552.6721206466 620136.9135610893 618573.6926002997 555358.4462453383 629053.4535201755 623733.8877130396 588419.9803539338 601270.4169335492 0.8488646525808424 1.0627044326978234 1.1035844329490447 1.0313777230613779 1.0287778596442452 0.9236417269248671 1.046207223578899 1.0373600133099066 0.9786278582519458 1.0 19.197654452772593 1.2241879498426496 24.33017338868877 0.9893139295183716 1.0163434784166427 0.008508704809645828 0.06953104448526862 1002.3386161141954 1696699.3541655333 0.06370505247338722 0.016247510959308053 16.7566789877519 -1.2241879498426496 0.02702954889827114 FVLDEADEMLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVLDEADEMLSR 12 0 J3KTN0 J3KTN0 EIF4A1 0 157.38 0.00017209999999999998 16743000.0 26558.0 38352.0 30825.0 30165.0 43653.0 34999.0 30169.0 32332.0 31403.0 36871.0 False True 26415.014678871197 39628.52313572642 35164.892064296946 33983.88590711285 49211.950798397826 32579.60150878411 28709.610213228112 34744.77801856935 23664.15142864136 34517.86121314876 0.7652564136508268 1.1480584759009018 1.0187448129289574 0.984530463728949 1.4256952507721337 0.9438476302921597 0.8317320136362292 1.0065738952949421 0.6855625058144408 1.0 15.075055454936047 2.4937272721596195 24.97929737037139 0.8924678155049465 1.0773866378994155 0.20415373195902597 0.17518042728839503 1148.8277230325239 1728104.1712764862 0.055781573904262 0.05132251850283727 311.69316015959447 -2.4937272721596195 0.184918822394469 FVLKPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVLKPQR 7 1 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2;A0A2R8Y6Q7 A0A2R8Y430 GSS Glutathione synthetase 0 72.234 0.063425 0.0 222040.0 290030.0 323750.0 208100.0 144330.0 185770.0 232220.0 177290.0 450590.0 257070.0 False True 220844.56131096339 299683.4732231627 369331.18591455364 234445.4386630261 162709.5699890673 172928.15715554226 220986.6314334524 190520.28006037866 339548.13209666294 240663.5725112999 0.9176484791880751 1.2452381974388402 1.5346368462024407 0.9741625465649488 0.6760872378449696 0.7185472871987004 0.9182388058461834 0.7916456905892276 1.410882953965624 1.0 17.876658262554006 3.4966329136049175 24.409736866990507 0.8863114699610827 1.2372174114706282 0.2548746870229839 0.23686859072046215 674.2437555028353 843499.4169612931 0.06291377625858076 0.09584780576507676 3137.8553077900383 -3.4966329136049175 0.35090594150954557 FVLMAT(ph)PNLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVLMATPNLSR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3 A0A087X1U1 AGAP1 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 1 FVLMAT(1)PNLSR 127.79 0.0031215999999999995 31813000.0 105070.0 62830.0 59412.0 64626.0 59476.0 64366.0 50329.0 65276.0 97415.0 63581.0 True False 104504.31479437454 64921.25856846295 67776.69318163865 72807.6449737469 67049.91605812909 59916.52992126627 47894.39399454927 70147.22658481177 73408.37854412314 59523.20614556726 1.7556902855468424 1.0906881999886642 1.1386599877682502 1.223180834642741 1.1264500083237259 1.0066079064144684 0.8046339754854754 1.178485352641504 1.2332732609295094 1.0 15.86116461711325 4.7385777779612175 10.69143730557525 1.0897606848487593 1.7567577956171314 0.7321806958044847 0.12094409241164454 0.036497113553436454 195.03597120507672 0.030289246574003736 0.1751366661801186 54774.418788991956 -4.7385777779612175 0.6669971107683721 FVMEEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 FVMEEGR 7 0 P09467 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ;;;; 195.98 0.0010592000000000002 1533070000.0 2191270.0 3352550.0 3281710.0 2863950.0 2250050.0 2213310.0 2727540.0 1896820.0 3005180.0 2461380.0 False True 2179472.445792984 3464137.600090727 3743746.242865336 3226525.7763525886 2536580.530408791 2060309.0892713214 2595598.469985357 2038370.340256793 2264593.6563488944 2304292.621106561 0.9458314563999967 1.5033410116234236 1.6246835183057284 1.4002239762427202 1.1008066020671807 0.8941178175026772 1.1264187743390448 0.8845970002186322 0.9827717346338581 1.0 21.135892504946852 3.1307731044607947 3.6821622246010044 0.9772406648213685 1.397514397316897 0.5239183688918878 0.1750566399698824 0.17300330219400656 4.48924122167574 0.05228395566235142 0.0642497369519665 1351.366362396963 -3.1307731044607947 0.4202737324955286 FVMEEGRK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVMEEGRK 8 1 P09467 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ; 112.84 0.004751399999999999 747930000.0 603480.0 620200.0 559130.0 551420.0 424620.0 588360.0 692960.0 543320.0 902920.0 670050.0 False True 600230.9307329308 640842.9820811829 637850.6439549177 621229.7154616341 478692.8400800787 547688.0580504651 659438.8774357309 583865.2973230579 680407.4645081321 627286.8353413334 0.9568683685292385 1.0216107623755135 1.0168404755502896 0.9903439391065757 0.7631163498267927 0.8731062525047967 1.0512557259023334 0.9307788150939785 1.0846831563711894 1.0 19.25876576004566 1.246985959722498 24.9628860029731 1.042341585950458 0.9515572343905326 0.169014352653453 0.08143936452837092 306.0694130453454 906851.8875826108 0.05981368506910313 0.0210596774375178 17.65980727489473 -1.246985959722498 -0.09078435155992526 FVMQEEFSR ddPTM_BT-474_Trastuzumab_2h_R1 8 FVMQEEFSR 9 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;;;; 252.72 1.6266e-14 5892430000.0 1601178.0 2105124.0 2207636.0 1863500.0 1281139.0 1632430.0 1930390.0 1412626.0 2536748.0 1497947.0 False True 1592557.4355556015 2175191.779765667 2518451.9596839026 2099418.90893104 1444284.4577442245 1519583.9564268838 1837009.6608940791 1518043.3252894809 1911600.4460816805 1402346.7400030533 1.1356374212786589 1.551108379772702 1.7958839193211367 1.49707547287946 1.0299053839859034 1.0836007337411968 1.3099539568153304 1.0825021244647208 1.3631439297798191 1.0 20.419411679181884 3.2673670477558168 12.79766811369093 1.1528392684460358 1.5205642383060147 0.4593928551393792 0.18508926511572937 0.9779968601665416 432.355575248381 0.05122909001908368 0.0690708613116848 1850.8322050694437 -3.2673670477558168 0.36772496985997893 FVNDYDKDNDGR ddPTM_BT-474_Trastuzumab_2h_R1 6 FVNDYDKDNDGR 12 1 Q14257;Q14257-2;A8MXP8 Q14257 RCN2 Reticulocalbin-2 0 ;;;;; 192.4 3.77e-06 3522340000.0 5158310.0 4846130.0 4292670.0 3975480.0 4275460.0 5312250.0 5472030.0 5203380.0 6320560.0 4868220.0 False True 5130538.23210212 5007430.507502552 4897040.623443487 4478775.360384855 4819914.488363177 4945026.661191417 5207327.003715422 5591682.637828263 4762942.679164842 4557526.031707172 1.125728782766888 1.0987168197538202 1.074495370816157 0.9827207413025312 1.0575725634545017 1.0850243370610202 1.1425775667516802 1.2269118374588228 1.045071963611083 1.0 22.119819466007144 2.365075556006833 4.366045411698321 1.134155739949194 1.0657480054523218 0.0 0.06809658719499169 0.3911984446544143 13.115321030334027 0.024870966053139862 0.020482586099616232 231.7797851770532 -2.365075556006833 -0.0684077344968721 FVNLFPEVKPTIQDVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVNLFPEVKPTIQDVLR 17 1 O94973-3;O94973;O94973-2;A0A0G2JQM1;A0A0G2JS82 O94973-3 AP2A2 AP-2 complex subunit alpha-2 0 71.558 0.027596 104450000.0 79418.0 59230.0 49587.0 47113.0 49958.0 55165.0 68702.0 52280.0 95674.0 50825.0 False True 78990.42231216932 61201.43474470893 56568.418582069455 53077.50096939531 56319.85517573499 51351.57339444198 65378.62179287342 56181.39907246092 72096.42466591834 47581.3049865283 1.6601146676101861 1.2862496050084564 1.188879090182282 1.115511669644688 1.1836551181536705 1.079238440580416 1.3740401153643027 1.180745233624163 1.5152258788684128 1.0 15.53810721986598 4.734473873453745 3.0192256561124666 1.2106101864785423 1.730672438628481 0.4899167362069169 0.13871307581116432 0.30096772059907223 4.0928347119296635 0.03207658345716923 0.37474746855938285 54259.26087376503 -4.734473873453745 0.5200622521499387 FVPAENDSILMNPAQDGEVQLS(ph)QNDDK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVPAENDSILMNPAQDGEVQLSQNDDK 27 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 FVPAENDSILMNPAQDGEVQLS(1)QNDDK;FVPAENDSILMNPAQDGEVQLS(1)QNDDK 149.49 6.9693e-08 163509000.0 93098.0 113411.0 114555.0 133397.0 125266.0 99433.0 86491.0 82009.0 73090.0 90846.0 True False 92596.77071216026 117185.81657660274 130683.34827009017 150285.04652249734 141217.88259024805 92559.43075010518 82307.09990229408 88128.92801326406 55077.94885582257 85048.13050282643 1.0887572738484 1.3778764551762634 1.5365810805887983 1.7670587893463792 1.6604466406884146 1.088318228782573 0.9677708306540465 1.0362241649783852 0.6476091658945066 1.0 16.375991902987263 2.5730842334290953 4.203499160607088 0.9386035542110157 1.4966692012724088 0.6592295946873873 0.1959121893409716 0.15433192949827504 4.776169907287741 0.07066008227087973 0.06539383064280029 374.1831557930121 -2.5730842334290953 0.558065647061393 FVPDKEFSGSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 FVPDKEFSGSDR 12 1 Q13573;G3V4X8 Q13573 SNW1 SNW domain-containing protein 1 0 ;;; 153.75 5.3917e-05 1191260000.0 1648100.0 1680510.0 1650150.0 1562760.0 1606870.0 1963240.0 1897040.0 1778850.0 2298700.0 1864830.0 False True 1639226.8127211225 1736444.7594602513 1882476.7766390792 1760605.2557666067 1811495.369835329 1827525.8397698612 1805272.927803451 1911596.819817275 1732216.186001905 1745814.9528387138 0.9389464845949006 0.9946327682878267 1.078279673099461 1.0084718617536432 1.0376216373274947 1.046803864749975 1.0340574325291796 1.0949595870450062 0.9922106482048988 1.0 20.735469218343106 4.516257341899836 3.765728805713804 1.0419808222929778 0.9442646386886706 0.4777341601751327 0.031245209493268065 0.17333151337323568 4.923259349456236 0.007405848876277061 0.033306965418386944 32828.976412270946 -4.516257341899836 -0.09771618360430723 FVS(ph)EGDGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 FVSEGDGGR 9 0 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR 153.66 8.1341e-05 3616250000.0 4220070.0 4375830.0 4180940.0 4387650.0 4174860.0 4778040.0 4436510.0 3993950.0 4931200.0 4334630.0 True False 4197349.612013858 4521476.856304908 4769580.010618061 4943126.040124104 4706503.674666097 4447745.341096344 4221899.06218597 4291998.829867157 3715971.834694653 4057990.202336552 1.0343419778581684 1.1142158139518141 1.1753552307424946 1.2181217286522523 1.1598114928804257 1.0960463479028055 1.0403916351880398 1.0576661391138562 0.9157173007847658 1.0 21.95233395116159 1.9064053003930037 1.213997605704539 0.9722094877900036 1.1429569310258472 0.6048885737376273 0.05388786884295374 0.33130972567911166 0.9020848424393046 0.04429795071241998 0.01925604256378096 80.6130402307732 -1.9064053003930037 0.17074744323584357 FVSAIEGMHPNQEDHETFVDINPLTGIILK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVSAIEGMHPNQEDHETFVDINPLTGIILK 30 0 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PPU6;A0A1W2PRF6;Q14108-2 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 ; 201.32 1.2038e-25 1050940000.0 363351.0 439120.0 466220.0 419450.0 521990.0 543240.0 469700.0 272927.0 520470.0 428200.0 False True 361394.75858809106 453735.84374635504 531859.7235431147 472552.3269928221 588462.3324228734 505687.09744940954 446978.8165717544 293294.1986352243 392207.14244068967 400871.9093995363 0.9015217831786272 1.131872383939307 1.3267572785027124 1.1788112759027078 1.4679560194285692 1.2614680290441784 1.115016557885738 0.7316406856108925 0.978385197975519 1.0 18.612781800406758 1.9419186669888584 5.815590625147773 0.8816523321226196 1.2209534649464284 0.4474941516814277 0.1522119325371254 0.1841439243178306 13.125512526343028 0.06857193390944735 0.04213303697159816 87.48199269522227 -1.9419186669888584 0.3393011328238088 FVSEDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVSEDDR 7 0 P34932;A0A087WYC1 P34932 HSPA4 Heat shock 70 kDa protein 4 0 154.92 0.017524 0.0 806250.0 845940.0 821280.0 739900.0 814830.0 890350.0 833170.0 771960.0 996170.0 897080.0 False True 801909.2395827962 874096.6015184704 936909.0853062698 833571.2641363435 918593.7706242065 828802.2001584603 792866.3840815166 829567.5751334535 750677.2514941145 839827.586371171 0.95484984370159 1.0408048219699153 1.1155969397892491 0.9925504682909255 1.093788517466279 0.9868718456125612 0.9440823294545848 0.9877831933551382 0.893846860565431 1.0 19.679733652544524 2.5151916265718026 7.536031329586873 0.959236754965738 1.0412789304268764 0.3819135570716339 0.05010934862153676 0.25868589423413196 44.5513933400427 0.01583675527119358 0.014676149592427926 327.4851614069207 -2.5151916265718026 0.08204217546113834 FVSEDDRNS(ph)FTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVSEDDRNSFTLK 13 1 P34932;A0A087WYC1 P34932 HSPA4 Heat shock 70 kDa protein 4 1 FVSEDDRNS(1)FTLK 127.94 0.00010361 775670000.0 715370.0 608670.0 548920.0 566640.0 554960.0 693910.0 672130.0 641130.0 896300.0 730250.0 True False 711518.527405079 628929.2130012149 626203.164701828 638376.5659010918 625630.8664943732 645941.6349884396 639616.5041140573 688974.3761921738 675418.8748046753 683644.8198015203 1.04077220626297 0.9199648630173329 0.9159773416898426 0.933783958293473 0.9151402137092327 0.9448497469431175 0.9355976752661629 1.0077957972272806 0.9879675165252724 1.0 19.382887457737787 1.7452877803266729 7.904950571379463 0.9977633536697944 0.9402853137623887 0.3407767814262209 0.03469110214134074 0.13042378079916297 28.10440708721098 0.016365811293391635 0.008754926281828444 55.62727430123193 -1.7452877803266729 -0.05747803990740574 FVSEDDRNSFTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FVSEDDRNSFTLK 13 1 P34932;A0A087WYC1 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 167.98 2.8256e-05 2950500000.0 3338900.0 3837600.0 3217400.0 3361600.0 3277200.0 3859400.0 4009200.0 3737900.0 5095700.0 4450300.0 False True 3320923.7333866614 3965332.196121809 3670381.9538578684 3787178.215327384 3694531.9945137696 3592608.762050381 3815259.6793686943 4016841.0786716104 3839933.0138817267 4166278.043906479 0.7970960407320349 0.9517684980054152 0.8809738368820825 0.9090075543245224 0.8867703872806385 0.8623065297585848 0.9157477343474044 0.9641317829343069 0.9216698869865254 1.0 21.990327692711276 1.4104074660121062 0.7110947940851841 0.9945887804859858 0.8830229458859084 0.45251702471354005 0.04007755291559622 0.5585360795036342 0.6292732850169309 0.036155919351958644 0.01574435896018438 25.7280852444773 -1.4104074660121062 -0.11156583460007741 FVSEEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVSEEHR 7 0 Q6NXG1;Q6NXG1-2;Q6NXG1-4;Q6NXG1-3;A0A2U3TZN9;Q6NXG1-5;H0YBR2;H0YBB3 Q6NXG1 ESRP1 Epithelial splicing regulatory protein 1 0 ; 150.84 0.0019219 503530000.0 505400.0 729390.0 718170.0 675090.0 624090.0 616250.0 631690.0 516320.0 753160.0 643770.0 False True 502678.9825552186 753667.3052244338 819282.0935544559 760556.3247814624 703564.1622287615 573650.0879964636 601132.7414098594 554850.4202198355 567553.8098269433 602684.0474407742 0.834067177802009 1.2505180922322268 1.3593890480981528 1.2619486578599086 1.1673847436585765 0.9518255716778969 0.9974260044919022 0.9206323322741684 0.9417103575861894 1.0 19.201042352763814 2.771617940431472 4.703828723034472 0.9564868535469556 1.1964600284855835 0.3937544622039082 0.13056736294455584 0.19850789534567737 11.071158743663394 0.041965807489448295 0.043370072771548966 591.0414516560078 -2.771617940431472 0.2399731749386279 FVSEIIGIYYPSDESVQDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVSEIIGIYYPSDESVQDDR 20 0 O15296-4;O15296;O15296-3 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 ; 161.63 5.1844e-11 53210500.0 80544.0 82456.0 76843.0 87413.0 87267.0 94988.0 89076.0 73211.0 88657.0 84097.0 False True 80110.36005327958 85200.49811429545 87661.82646867044 98479.47683734327 98379.93517796678 88421.70313770055 84767.05357663517 78674.37657792521 66808.67029293563 78729.85746093607 1.0175346766381292 1.0821878873154314 1.1134508469314353 1.2508529802204522 1.2495886357571602 1.123102543168878 1.0766824215158095 0.9992953006038607 0.8485811158248895 1.0 16.264623245801722 1.7393715354233303 2.018234513429204 0.9252957447649556 1.1441277406465828 0.5646842433654633 0.0755629248580367 0.22995532909873062 1.9042166905478877 0.05633774501150334 0.02344568650575611 54.8746212128237 -1.7393715354233303 0.21883199588162727 FVSELWK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVSELWK 7 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 121.52 0.010306 193720000.0 487540.0 426260.0 404140.0 340340.0 280020.0 434840.0 457010.0 388220.0 710320.0 409490.0 False True 484915.13881078624 440447.8064203881 461039.39915214764 383427.0091041532 315678.88719142694 404780.53430325707 434902.68035226164 417190.94774121605 535271.1538003546 383355.9976179732 1.2649212268070997 1.1489263482433076 1.2026403708742508 1.0001852364032942 0.8234614539825493 1.0558867914377439 1.1344616571922175 1.0882598689820433 1.3962769778647621 1.0 18.548325225471316 3.759916768802806 22.66520877420729 1.0691264040176978 1.1998391086105218 0.16676205723522175 0.13731563280046816 487.40316166528095 517273.85612512456 0.03681928362713922 0.06625522737037223 5753.296666158727 -3.759916768802806 0.13071270459282402 FVSISDLLVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 FVSISDLLVPK 11 0 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 112.75 0.0034531 43236000.0 164530.0 164950.0 166480.0 156170.0 161130.0 217390.0 227130.0 195400.0 264470.0 226760.0 False True 163644.18876100137 170440.26103561927 189918.93692989944 175941.10598752907 181648.9504076659 202362.34098101585 216142.85417914073 209981.74022109545 199294.91221643725 212287.98266099658 0.770859408572012 0.8028728659021453 0.8946287705469492 0.828785048414587 0.8556723189448822 0.9532444486232128 1.018158689294721 0.9891362553311179 0.9387950731751594 1.0 17.69566317895331 2.7310018556935787 2.5837492784308616 0.9876285854539509 0.828245776208728 0.8269582617909689 0.034591949786853336 0.11852945843079228 1.5714599597598449 0.012503316681779862 0.012400516312106731 538.2720824900496 -2.7310018556935787 -0.15938280924522297 FVTHVSDWGALATISTLEAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVTHVSDWGALATISTLEAVR 21 0 A0A3B3IRL2;O75629 A0A3B3IRL2 CREG1 Protein CREG1 0 107.45 0.00034287 14817000.0 12982.0 15252.0 14102.0 13789.0 13570.0 18090.0 17036.0 14956.0 20696.0 13823.0 False True 12912.106354435793 15759.6535999713 16087.439023218658 15534.685986181987 15298.059064308492 16839.480879279545 16211.903596160097 16072.092665029162 15595.748112191866 12940.8043055343 0.9977823672763343 1.2178264370500897 1.2431560390986407 1.2004420760414698 1.1821567425887185 1.3012700355941498 1.2527740326949284 1.2419701500435893 1.205160648749023 1.0 13.659639667014721 4.7384824310758855 8.89686123098926 1.2190438371193932 0.9967399124484057 0.3849444146212455 0.07673691997830967 0.07183592019899124 108.9066100609544 0.01649100336557595 0.09631051996980565 54762.3946965981 -4.7384824310758855 -0.22230392467098758 FVVIQNEDLGPAS(ph)PLDSTFYR ddPTM_BT-474_Trastuzumab_2h_R1 4 FVVIQNEDLGPASPLDSTFYR 21 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 FVVIQNEDLGPAS(1)PLDSTFYR;FVVIQNEDLGPAS(1)PLDSTFYR;FVVIQNEDLGPAS(1)PLDSTFYR;FVVIQNEDLGPAS(1)PLDSTFYR 219.95 3.1340999999999997e-25 178264000.0 80761.8 109949.0 122243.0 106851.0 128864.0 132133.0 98849.0 76401.9 101261.0 105432.0 True False 80326.98744227958 113608.5859994259 139453.7518447964 120378.32564432012 145274.06656323152 122998.95671762533 94067.29623014978 82103.39773898719 76306.5833778827 98703.2394951234 0.8138232124209892 1.1510117254564771 1.4128589148453061 1.2195985284785675 1.4718267334114097 1.2461491370169497 0.9530314983714119 0.8318206996949036 0.7730909721727294 1.0 16.59080981506044 2.145222931856744 3.852193609627358 0.858708534976821 1.237012855545797 0.46563744962313236 0.17376933154960486 0.19520229673009398 5.52162476224335 0.07205779926586618 0.05148967271866629 139.7085328263632 -2.145222931856744 0.3783043205689761 FVVPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FVVPKPR 7 1 F8VVM2;Q00325-2;Q00325 F8VVM2 SLC25A3 Phosphate carrier protein, mitochondrial 0 116.35 0.014401 0.0 183890.0 178880.0 219430.0 156210.0 190870.0 281890.0 141580.0 98938.0 175300.0 172920.0 False True 182899.95667209962 184833.9126647565 250323.8366802491 175986.16998342794 215176.1631248756 262403.6077976841 134731.23451187767 106321.2559569841 132099.6638996539 161884.0975557398 1.129820405053212 1.141766952131383 1.5463151752386166 1.08711215394602 1.3291988921319855 1.6209350501974629 0.8322697321488735 0.6567739361821852 0.8160138388773454 1.0 17.30460174602979 2.128827871387193 7.821884316099107 0.7767920640671054 1.302336033606995 0.6257997645514312 0.18168292617031914 0.14075344427549924 9.228910669625964 0.06751931430044884 0.04981621016272446 134.5327040410194 -2.128827871387193 0.5255439695398895 FVYVWDTTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 FVYVWDTTSR 10 0 Q96DI7;Q96DI7-2;Q9NSS8 Q96DI7 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein 0 ; 159.28 1.799e-05 629020000.0 371850.0 426110.0 400280.0 417910.0 427880.0 407170.0 419050.0 374190.0 461000.0 403600.0 False True 369848.0009164192 440292.81376106606 456635.94470386923 470817.36315072206 482367.9817565455 379023.29627508327 398778.9505735434 402113.957898319 347392.7270835164 377841.90246065595 0.9788432635655884 1.1652831803294053 1.2085370673026874 1.2460697452679894 1.2766397231624507 1.0031266881908376 1.0554121921802138 1.0642386545261227 0.9194129206452687 1.0 18.527423179127606 2.7195646858619473 24.72925906949002 1.0205714469391522 1.1803338312640097 0.49726942628634574 0.08324523525452625 657.4924280839978 855934.967027945 0.02796705124331773 0.02640848260019181 524.2816841722051 -2.7195646858619473 0.15976238432485745 FWAWDPEEER ddPTM_BT-474_Trastuzumab_2h_R1 4 FWAWDPEEER 10 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 0 ;;; 124.23 0.0010260999999999998 106866000.0 278664.0 329638.0 285661.0 307322.0 295862.0 303791.0 323514.0 272694.0 348583.0 303744.0 False True 277163.7039864811 340609.801559621 325879.58579007717 346228.93368956563 333538.2719885363 282790.64321709255 307864.39187650516 293043.8109920745 262679.39042289235 284358.7978716783 0.9746971293343134 1.1978169977822417 1.146015485468242 1.2175777091511242 1.1729486637478719 0.9944852958082436 1.0826617434760508 1.0305424456194088 0.9237603773435238 1.0 18.11735291544047 2.738117362608299 24.99527092841323 1.0163721258480265 1.1493654552913293 0.46460681932052017 0.0721082577441413 37.36096548563521 2106766.5948987813 0.022485545322280448 0.022413381226765294 547.1638070369627 -2.738117362608299 0.13299332944330278 FWEGDFHR ddPTM_BT-474_Trastuzumab_2h_R1 3 FWEGDFHR 8 0 P49589-3;P49589;B4DKY1;P49589-2 P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic 0 ;; 140.5 0.00064854 1029940000.0 595636.0 754359.0 657207.0 701087.0 666427.0 660668.0 647558.0 600165.0 834994.0 682791.0 False True 592429.1619573807 779467.3832953552 749736.0330543516 789844.5423159299 751292.5282277013 614997.5762051883 616233.1456282128 644952.359876119 629220.9170463642 639214.6938132143 0.9268077966469512 1.2194140573419365 1.1729017500862282 1.2356482883773183 1.1753367616534132 0.9621142663921576 0.9640472154231846 1.0089761172864735 0.9843655396792702 1.0 19.285941046732432 2.7393609353100854 24.9993659940646 0.9848344702388833 1.1565716744842023 0.49913190147797926 0.0808541090140149 57.65890634764794 1801096.8958561025 0.024921991081500068 0.025060979438711245 548.7328186792125 -2.7393609353100854 0.17173720424531902 FWESPETVSQLDSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FWESPETVSQLDSVR 15 0 Q92922;F8WE13 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 ; 97.911 0.0072846 73805000.0 50178.0 52514.0 65534.0 69311.0 58739.0 66674.0 59931.0 52056.0 60504.0 64230.0 False True 49907.84722329993 54261.89674461662 74760.6175682607 78085.76549338309 66219.06347667045 62064.9833137139 57031.90857134723 55940.683055011905 45593.599912063044 60130.78640993039 0.8299882672922737 0.9023979226663741 1.2433001800208328 1.2985987736971871 1.101250581112217 1.0321664993801591 0.9484643720197314 0.9303168375954167 0.7582405392345479 1.0 15.87581620624055 2.161064614345174 1.9116546985649316 0.8892312704003789 1.0855997159876427 0.23885379813214314 0.14170911255088903 0.5203360220513027 3.739625123727551 0.0817537119504734 0.04879020629276677 144.89874178971223 -2.161064614345174 0.19636844558726385 FWETLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 FWETLDR 7 0 A0A1B0GUB2;Q6P1J9 A0A1B0GUB2 CDC73 Parafibromin 0 ;; 141.78 0.0058941 224910000.0 381990.0 407320.0 298103.0 344974.0 315524.0 391380.0 287323.0 293914.0 441740.0 381360.0 False True 379933.4082830792 420877.39996986015 340073.31124227424 388647.6730290185 355704.1111427318 364324.82180942106 273424.0888095512 315847.3551450514 332879.0960127388 357021.278301278 1.0641758107270751 1.178858027657097 0.9525295323022681 1.088584061090757 0.9963106760336152 1.0204568857713288 0.7658481592764284 0.8846737557152508 0.9323788699558505 1.0 18.445650535203562 2.3984104420460826 7.65208488815026 0.8818759449513351 1.054026367109141 0.48705627257625084 0.07779648721662959 0.183984709161254 15.396265084917474 0.026513253402944807 0.022145208015839454 250.27094994031927 -2.3984104420460826 0.17215042215780585 FWEVISDEHGIDPAGGYVGDSALQLER ddPTM_BT-474_Trastuzumab_2h_R1 1 FWEVISDEHGIDPAGGYVGDSALQLER 27 0 K7ESM5;Q9BUF5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 K7ESM5 TUBB6 Tubulin beta-6 chain 0 101.41 0.0026887 35361000.0 17232.0 20728.0 17272.0 23170.0 22271.0 20265.0 20636.0 19878.0 18594.0 25469.0 False True 17139.224826655183 21417.91894965939 19703.747469084712 26103.31962432639 25107.079839441016 18864.128248678822 19637.7578428246 21361.397298438744 14011.75784683493 23843.54661489207 0.7188202788569407 0.8982690073582553 0.8263765364829683 1.0947750368656533 1.0529926711389392 0.7911628481014972 0.8236089269773046 0.8958984853829153 0.5876540966469955 1.0 14.54131122538126 FWEVISDEHGIDPSGNYVGDSDLQLER ddPTM_BT-474_Trastuzumab_2h_R1 8 FWEVISDEHGIDPSGNYVGDSDLQLER 27 0 Q13509;G3V5W4;G3V2R8;G3V3R4;G3V2N6;G3V3J6;G3V3W7 Q13509 TUBB3 Tubulin beta-3 chain 0 ;;;;;;; 304.76 3.0217e-71 12788792000.0 2728858.0 3401726.0 3133294.0 3356204.0 3394017.0 3385982.0 3706474.0 3039503.0 3507515.0 3771686.0 False True 2714166.1317326236 3514950.3935232074 3574434.56012033 3781099.0822806526 3826224.9470351553 3151917.0340842856 3527177.6925143204 3266326.148143499 2643134.9265430337 3530973.770377159 0.7686735467997292 0.9954620515767127 1.012308443100819 1.0708374879479143 1.083617493603318 0.8926481019278756 0.9989249204016508 0.925049677668551 0.7485569416338963 1.0 21.75163467348956 1.5101809596230829 5.235207478596569 0.8627520251497065 0.9806216688366945 0.128693834136678 0.10253674496230242 0.2512286054992483 15.229506822791496 0.05940645473346597 0.025761671930148132 32.372851838889744 -1.5101809596230829 0.11786964368698805 FWEVISDEHGIDPTGSYHGDSDLQLER ddPTM_BT-474_Trastuzumab_2h_R1 4 FWEVISDEHGIDPTGSYHGDSDLQLER 27 0 Q13885;Q9BVA1 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain 0 ;;; 324.12 4.5515e-83 4351640000.0 1013040.0 1616710.0 1664800.0 1723860.0 1883310.0 1784580.0 1840330.0 1229360.0 1556980.0 1682350.0 False True 1007585.905199325 1670521.2150281651 1899189.3692989936 1942100.4992486504 2123138.365247075 1661216.1850494589 1751306.2071566866 1321101.08576359 1173283.141463109 1574980.9826677027 0.6397448072628 1.060661197444198 1.205849080210573 1.23309457105896 1.3480406357992356 1.0547531705657112 1.1119538752717664 0.8388044683091405 0.7449506720238629 1.0 20.586902978015054 1.7317373682211192 5.345291261181182 0.8435835166322194 1.1107860561720113 0.24286828679641181 0.18503605141662538 0.20973821595752654 14.811921321627858 0.09780659458695523 0.05001816449958703 53.91844617969581 -1.7317373682211192 0.2672025395397919 FWEVISDEHGIDPTGTYHGDS(ph)DLQLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 1 FWEVISDEHGIDPTGTYHGDS(1)DLQLDR;FWEVISDEHGIDPT(0.005)GT(0.005)YHGDS(0.99)DLQLDR 176.18 8.1348e-13 99431000.0 78095.0 80433.0 66618.0 80085.0 78578.0 75684.0 75339.0 69759.0 83748.0 80899.0 True False 77674.54519717026 83110.1637822248 75997.23534596372 90223.75278869993 88584.4425317048 70452.14322097253 71694.5647470713 74964.77080902453 63109.427565705744 75735.95655888149 1.025596674636064 1.0973673213939033 1.0034498644891228 1.1912935003145408 1.1696484279938308 0.9302337545073321 0.9466384001016984 0.9898174422705364 0.8332822404724082 1.0 16.20869077927499 2.724531040195476 24.78325191788599 0.9441342519231897 1.097454336268777 0.5752512646159629 0.06761194611383052 542.0206573631157 957478.2200266398 0.022122241769616097 0.020961512681736818 530.3114940644937 -2.724531040195476 0.1533200843455873 FWEVISDEHGIDPTGTYHGDSDLQLDR ddPTM_BT-474_Trastuzumab_2h_R1 33 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 351.77 1.836199999999999e-110 200310955000.0 3825328.5 4747240.0 4422861.0 4872782.0 4964057.0 5005058.0 4984557.0 3379645.0 5224735.5 4770686.0 False True 3804733.3563899486 4905249.013632816 5045561.384603034 5489675.7015824085 5596200.234679001 4659070.121099233 4743434.935053125 3631851.271389573 3937169.443893839 4466216.73509023 0.8518917871801586 1.098300710552892 1.129717092536285 1.2291556875086365 1.2530068661269174 1.0431804808068963 1.0620700284840285 0.813182943598504 0.8815446444773347 1.0 22.090621832811667 1.892872617901122 4.392483689167632 0.8833329781984504 1.110958171525275 0.3928144785896529 0.11197271313577759 0.21559669013015081 6.555050562284224 0.05486482145196638 0.031554512757448944 78.1398580423168 -1.892872617901122 0.22762519332682463 FWEVISDEHGIDPTGTYHGDSDLQLER ddPTM_BT-474_Trastuzumab_2h_R1 9 FWEVISDEHGIDPTGTYHGDSDLQLER 27 0 P68371;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0QZL7;P04350;M0QYM7;M0R278 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 ;;;;;;;; 397.62 5.978399999999996e-146 39816459000.0 3162068.6 3821657.0 3807253.0 3949592.0 4089149.0 4006638.0 4298797.0 3014289.9 4192907.0 4148973.0 False True 3145044.3739964515 3948858.543004562 4343281.129163692 4449609.942239206 4609877.8868649965 3729668.545671357 4090847.7661107266 3239231.518591968 3159621.251925307 3884181.9910255023 0.8097057195731697 1.016651267146724 1.1181971234094976 1.1455719511907885 1.1868336492770504 0.9602198234503037 1.0532070267466176 0.8339546205806762 0.8134586018949909 1.0 21.88917936827873 1.7562628314501114 8.12785568669933 0.8694556798493035 1.0500696400361398 0.3005993671504248 0.10998340110250167 0.15931181135621142 36.5794968113867 0.05415653647143257 0.02933054465805199 57.05094354454293 -1.7562628314501114 0.1806139601868363 FWIQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 FWIQDK 6 0 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 100.67 0.087001 411780000.0 762590.0 701070.0 505400.0 534220.0 498230.0 643930.0 434930.0 539690.0 822800.0 675210.0 False True 758484.3001717142 724404.6911442361 576555.9269844496 601852.1972251888 561676.6372594264 599416.6347481742 413890.7743060523 579964.4082902909 620031.9649551351 632117.5197236359 1.1999102643181387 1.1459968574529442 0.9121024318967176 0.9521207345879622 0.8885636289672743 0.9482677129566689 0.6547687121328434 0.9174945958527672 0.9808808419456804 1.0 19.26983327549913 4.267475583060972 3.1285647628724362 0.8913628696730626 1.1946116850226565 0.5746398658315406 0.09148381001758901 0.1617283777561478 3.17002044834917 0.023373414434007762 0.073032705068437 18512.948076348683 -4.267475583060972 0.3032488153495939 FWLADCHQVLETVGLATQLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 FWLADCHQVLETVGLATQLYR 21 0 Q12955;Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;A0A087WTF3;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 0 ; 215.98 6.3584e-25 355100000.0 309740.0 381220.0 352760.0 361270.0 342100.0 356560.0 379410.0 331020.0 384750.0 392110.0 False True 308072.39425534906 393908.6772476434 402425.54175511375 407006.74495815206 385664.407214439 331911.84645195777 361056.48881304933 355722.393285501 289933.5178858633 367085.2040977398 0.8392394757848152 1.073071518139319 1.0962728469109428 1.1087527920351232 1.0506127811998445 0.90418203388983 0.9835767957482555 0.9690458490688353 0.7898262165005862 1.0 18.485755440127335 2.7466415341372175 24.373441920691768 0.9354373611260823 1.0434414179168183 0.25008630434204626 0.08915117143429573 611.6716694128032 1844906.1634786502 0.02743368301459374 0.02862443061692277 558.0094246556996 -2.7466415341372175 0.10800405679073599 FWQIYIEGQDEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 FWQIYIEGQDEPR 13 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ;;; 164.13 8.7366e-05 195211000.0 228552.0 253071.0 232057.0 244549.0 237149.0 250108.0 250173.0 236194.0 293528.0 267771.0 False True 227321.50142651438 261494.31525034996 264728.6085243975 275508.8783258259 267348.5194577517 232818.62265090345 238071.1762363325 253819.99564883008 221191.95747368824 250681.62552971323 0.9068135765681399 1.0431331562406638 1.0560351520180296 1.0990389811923806 1.0664863006724956 0.9287422728288776 0.9496953585380113 1.0125193464518398 0.8823620678471722 1.0 17.93549672777397 2.7403657275783266 24.94084587804652 0.9597665851250805 1.0395960446141868 0.3166882968159408 0.057989196362913595 196.8529519600171 2719892.11673423 0.01842029798828492 0.01863111662595375 550.0038475093737 -2.7403657275783266 0.07982945948910625 FWSLEDGLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 FWSLEDGLNR 10 0 K7EIN2;Q9BRJ7;K7ENA3;W4VSQ8;Q9BRJ7-2 K7EIN2 NUDT16L1 Protein syndesmos 0 ; 123.21 0.0010890999999999995 154514000.0 189189.0 228790.0 220920.0 223710.0 181251.0 199818.0 210107.0 176053.0 223340.0 212379.0 False True 188170.42744487373 236405.13684352435 252023.61572893657 252031.663062497 204332.2404911553 186005.0519809771 199943.321723316 189190.9688390198 168300.8496026737 198824.79039319017 0.9464133072779974 1.1890123780642061 1.26756635945921 1.267606833957106 1.0277000171209725 0.9355224346679248 1.0056257136140512 0.9515461752273506 0.846478194544286 1.0 17.601138124433355 3.0524462200789477 5.295813022875792 0.9527179434420348 1.1754932499268924 0.553139459877766 0.09299686668288497 0.14781854553388493 8.978537560008576 0.02805574236240748 0.03344603251478065 1128.356201317936 -3.0524462200789477 0.22277530648485766 FY(ph)EGS(ph)ELVADS(ph)GVT(ph)IDTTMRGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 FYEGSELVADSGVTIDTTMRGGR 23 1 E7ES19;P35443 E7ES19 THBS4 Thrombospondin-4 4 FY(1)EGS(0.999)ELVADS(0.537)GVT(0.537)IDT(0.479)T(0.449)MRGGR 53.262 0.047102 411650000.0 89276.0 146080.0 118690.0 156010.0 156770.0 117580.0 108900.0 83287.0 68875.0 120700.0 True False 88795.34793549603 150942.18449277536 135400.520328026 175760.85000393426 176733.7302514105 109451.97135354833 103632.09096160106 89502.29886281665 51901.67912771618 112996.82266353117 0.7858216350020789 1.3358091044934377 1.198268386105032 1.5554494884099044 1.5640592902126789 0.9686287523275031 0.917123937813585 0.7920780138157177 0.45931981009999706 1.0 16.78592268077627 2.4210262304498418 2.739486426858168 0.7736791937641496 1.2989219261447968 0.4769249871409802 0.24363769028844717 0.23287134969700748 3.5734001676409393 0.09442932927473432 0.07745523895994748 263.6490619362591 -2.4210262304498418 0.5252427323806472 FYAFGR ddPTM_BT-474_Trastuzumab_2h_R1 4 FYAFGR 6 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;; 156.86 0.022559 10853650000.0 9781670.0 11112620.0 10712260.0 10584290.0 9467910.0 9951220.0 9290010.0 8756050.0 12532480.0 9493550.0 False True 9729006.575565714 11482496.838979347 12220453.095366934 11924260.02876831 10673592.217800811 9263315.584052186 8840616.725015454 9409470.913320985 9444018.230628258 8887663.511162933 1.0946641446704246 1.291958997385229 1.3749905225392487 1.3416642083480548 1.200944680724551 1.042266684873638 0.9947065068239377 1.0587114264061257 1.06259853546059 1.0 23.083372766343025 2.8565299859876765 3.1878876704804573 1.0329094674871027 1.2833534750737123 0.7208676163643659 0.07229054926649352 0.13916553355879227 2.677750920200012 0.024149522237581593 0.025830663564680178 718.6707774984244 -2.8565299859876765 0.2504440075866097 FYAGGSER ddPTM_BT-474_Trastuzumab_2h_R1 1 FYAGGSER 8 0 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 94.163 0.024554 269370000.0 138360.0 182500.0 179510.0 236610.0 215640.0 153670.0 195150.0 148680.0 170870.0 173980.0 False True 137615.08513324117 188574.4021764203 204783.44767110908 266564.80173983035 243100.47580158303 143047.15460027006 185709.84895460473 159775.25658174246 128761.37804069492 162876.447448228 0.844904756269218 1.15777575659833 1.257293186826178 1.6366074157195798 1.4925452980478047 0.8782556154765048 1.1401884794524058 0.9809598569033667 0.7905463316396503 1.0 17.313418474210124 2.7261915340310594 24.71680925805447 0.9740296166803785 1.2899475387991814 0.3610561769340047 0.21189331827916616 814.6940358218033 1627978.4829542849 0.073811317486419 0.07004956656729093 532.3429832185485 -2.7261915340310594 0.315917922118803 FYALSASFEPFSNK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYALSASFEPFSNK 14 0 P27797 P27797 CALR Calreticulin 0 ; 240.12 5.0962e-17 291530000.0 690440.0 812650.0 753410.0 673530.0 626920.0 792620.0 904880.0 814600.0 1092030.0 720890.0 False True 686722.7477550948 839698.5639927018 859483.5792428859 758798.8289414132 706754.5459540368 737828.0450267855 861107.4974227148 875389.5884549858 822913.8389523046 674882.1830150197 1.0175446396987065 1.244215042455809 1.2735312931261038 1.124342660153655 1.0472265585626042 1.0932694084922447 1.2759375178282792 1.2970998649633985 1.2193444421305613 1.0 19.364276141317863 2.237076513542911 24.999739358656168 1.232704564308868 1.1404411071817337 0.0413649174012517 0.10728682045836158 80.22615758210728 1351376.9125159446 0.03924000083984902 0.03054178909168861 172.61419750720856 -2.237076513542911 -0.09226345712713435 FYAPWCGHCK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYAPWCGHCK 10 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 78.334 0.030312 363910000.0 406690.0 517710.0 518720.0 431100.0 382070.0 581960.0 531830.0 461090.0 715600.0 461500.0 False True 404500.4262275063 534941.6643876968 591751.2672049337 485677.2157983206 430724.3497936884 541730.4749864858 506103.35111210495 495498.87716757884 539249.9685487296 432046.6748899717 0.9362424241096624 1.2381571146773185 1.3696466182864007 1.12413135900654 0.9969393929565132 1.2538702563199844 1.171408971590843 1.1468642301060792 1.248128963580287 1.0 18.720827652554384 -2.418617784216983 1.8479705689373285 6.269934703273064e-05 1.1684218835725069 0.14430723008723123 0.12031540952779103 1865971.9122885664 167336.65577422976 7780540.689334012 0.02879451918545472 0.0038140134108698566 2.418617784216983 1.1683591842254741 FYCDYCDTYLTHDSPSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 FYCDYCDTYLTHDSPSVR 18 0 A0A0A0MRR7;P09234 A0A0A0MRR7 SNRPC U1 small nuclear ribonucleoprotein C 0 ;;;;; 333.07 5.718999999999998e-75 7677550000.0 651960.0 1603389.0 1680835.0 2005541.0 2027096.0 1973620.0 1725465.0 1639561.0 1315212.0 1803575.0 False True 648449.919799566 1656756.8335958803 1917481.9579202775 2259442.284967249 2285234.660060683 1837188.2948017519 1641997.666033598 1761913.3673420642 991095.6255378876 1688469.299381755 0.38404602324543335 0.981218215932332 1.1356332973435626 1.338160122777808 1.3534357189067268 1.0880791824135927 0.9724770634768586 1.0434974257377385 0.5869787658566159 1.0 20.68728451708392 -1.7452787207524223 8.35573093263473 0.9998729772413859 1.017071198444602 0.0 0.2872300619295832 0.0006898213699725578 2.1028954902953028e-05 0.2822634505134415 0.06603904893194514 0.01797716809281184 1.7452787207524223 0.017198221203216013 FYEAFSK ddPTM_BT-474_Trastuzumab_2h_R1 4 FYEAFSK 7 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;; 126.67 0.0091423 6260240000.0 7804980.0 8629760.0 7812230.0 7827940.0 7685320.0 8467740.0 8397370.0 7737160.0 11833200.0 8660720.0 False True 7762958.854894793 8916996.344799923 8912124.078879561 8818956.401383229 8663999.947539516 7882385.064715893 7991157.132031403 8314546.167702408 8917066.416756317 8107985.434784562 0.9574460779850997 1.099779521870448 1.0991785999818295 1.087687745903993 1.0685761607771964 0.9721755333820893 0.9855909579891513 1.0254762091741885 1.0997881642091594 1.0 22.950912066468533 2.7840963066902638 23.16120856921529 1.016176083817502 1.0680361759680521 0.17112367167340503 0.0498043907905274 307.86530266899695 156591.10201129003 0.0153375366005041 0.016267819321312875 608.2698728138697 -2.7840963066902638 0.0518600921505501 FYEEEENGGVWEGFGDFSPTDVHR ddPTM_BT-474_Trastuzumab_2h_R1 3 FYEEEENGGVWEGFGDFSPTDVHR 24 0 P19838;P19838-2;P19838-3;A0A494C1E9;D6RF93 P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 0 ;; 220.74 9.8342e-33 117847000.0 66781.0 83740.0 65999.0 78571.0 76721.0 78301.0 77378.0 74635.0 79841.0 86100.0 False True 66421.45851606665 86527.23527810092 75291.08552640822 88518.08054393393 86490.96458900611 72888.23617072793 73634.93052733483 80204.64268885073 60165.25536458796 80605.02428608142 0.8240362074741793 1.0734719832227895 0.9340743482588245 1.098170757070523 1.0730220027232353 0.9042641797617325 0.9135278002769591 0.9950327960226193 0.7464206592265376 1.0 16.29858214741809 2.713917763422761 24.23745707474391 0.918644988894674 1.0063357293228679 0.16408226465265208 0.09909126334699342 979.5895688423765 963472.777387686 0.030908041092975184 0.029154576768492365 517.5088288993114 -2.713917763422761 0.0876907404281938 FYEEVHDLER ddPTM_BT-474_Trastuzumab_2h_R1 8 FYEEVHDLER 10 0 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W543;F8W118;F8VUX1;H0YHC3;H0YH88;F8W020;P55209-3;F8VXI6;F8VRJ2;F8VVB5;Q99733;Q99733-2;C9JZI7;E9PNJ7;C9J6D1;A8MXH2;E9PKT8;E9PS34;E9PNW0;E9PJJ2 P55209;Q99733 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 0 ;;;;;;; 220.17 5.9679e-09 19689810000.0 9290610.0 11624950.0 11046810.0 11183850.0 9454190.0 10510520.0 11630800.0 9447210.0 12841990.0 11083930.0 False True 9240590.3880438 12011879.433319326 12602104.827406187 12599724.263294036 10658125.057125626 9783952.491502773 11068173.770029286 10152208.782160344 9677253.638349775 10376544.097970096 0.8905267785496602 1.1575992276339038 1.2144799567585767 1.21425053893992 1.0271362947525673 0.9428912361502662 1.066653181013753 0.9783805365551679 0.9326085397008895 1.0 23.306822699151144 3.054209678376687 7.895212041621152 0.9888546015850537 1.1283685013614781 0.3251263426893213 0.09153594321395708 0.2852150526087436 36.23433650569175 0.026922985504943823 0.03218362327487888 1132.9472207419337 -3.054209678376687 0.13951389977642448 FYEQFSK ddPTM_BT-474_Trastuzumab_2h_R1 5 FYEQFSK 7 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;; 145.34 0.0053347 7485720000.0 6190591.0 6432910.0 5649310.0 5342670.0 4878810.0 5925030.0 5932565.0 5598490.0 8314570.0 6148520.0 False True 6157261.545895318 6647025.520573791 6444683.743317221 6019051.47420371 5500097.534527557 5515446.622120374 5645584.166350882 6016277.752356189 6265555.633029916 5756116.189587191 1.069690281275732 1.1547761201551585 1.119623637023806 1.0456792872062188 0.955522326751713 0.9581888968985394 0.9807974648885195 1.0451974133600066 1.0885040236617012 1.0 22.456664283092696 3.60155097090815 3.697962198902145 1.005463143516314 1.118543551252951 0.5741911518021778 0.04214271278067 0.1795736838903696 4.376366736458643 0.012524540491981054 0.02009459678323895 3995.314495066714 -3.60155097090815 0.11308040773663697 FYGAEIVSALDYLHSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYGAEIVSALDYLHSEK 17 0 P31749;P31749-2 P31749 AKT1 RAC-alpha serine/threonine-protein kinase 0 ; 260.12 3.129e-27 375760000.0 787940.0 771300.0 729690.0 647070.0 728950.0 948500.0 866510.0 738780.0 1074310.0 895480.0 False True 783697.8185883646 796972.2542393045 832424.0094208224 728988.9956544184 821777.4616748473 882932.4275288363 824593.6009103486 793911.5150488259 809560.6955164693 838329.699741 0.9348324636840211 0.9506668491949256 0.9929554084484874 0.8695731475094319 0.9802556940649169 1.0532042796546708 0.9836149204365596 0.9470158522286674 0.9656829476118778 1.0 19.677158215539983 3.0331500299957765 24.99995537511098 0.986248872161121 0.9398459060105002 0.30199473127465915 0.0381344361039231 277.9079607025988 209581.4082828725 0.011567148766041646 0.013825333851803349 1079.3195161345398 -3.0331500299957765 -0.046402966150620784 FYGDEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 FYGDEEK 7 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 ;; 145.04 0.0053813 1065710000.0 1637800.0 1547340.0 1374270.0 1190130.0 1263460.0 1758930.0 1651810.0 1606810.0 2292320.0 1708250.0 False True 1628982.2667766856 1598842.276513216 1567755.2706310241 1340800.3359732225 1424354.1418858673 1637339.3091758508 1571905.6397730233 1726718.3214158549 1727408.4515142874 1599228.0224935948 1.0186053795109822 0.9997587923829792 0.9803200347793452 0.8384047284780446 0.8906510652964575 1.0238310523241276 0.9829152676564727 1.0797199005576896 1.080151440080963 1.0 20.608944226383247 2.188522653678643 1.8477795801005574 1.0565716272706651 0.9478774583080941 0.3509896773916916 0.0577163533235907 0.38557979729072467 2.604502942014922 0.032708838874674115 0.019835519441522297 154.35569362766728 -2.188522653678643 -0.108694168962571 FYGDEEKDK ddPTM_BT-474_Trastuzumab_2h_R1 7 FYGDEEKDK 9 1 P27797;K7EJB9 P27797 CALR Calreticulin 0 ;;;;;; 166.19 5.5571e-05 26624840000.0 35518130.0 28351630.0 23511960.0 21485350.0 22153190.0 37572810.0 38103300.0 35574830.0 65210350.0 33667740.0 False True 35326904.33451522 29295296.86562774 26822239.59838013 24205393.107057456 24974267.43425561 34975490.08158112 36260097.81025872 38229604.45992648 49140133.01642206 31519036.00879765 1.1208117000994164 0.929447742546783 0.8509854042139315 0.7679610854945311 0.7923550525874189 1.1096624297716053 1.1504189975904635 1.2129052566599994 1.559062053887244 1.0 24.909720075700164 2.374003740191453 1.9827024212412014 1.2596993734905408 0.8873250975892899 0.4992276048180583 0.15932446042231352 0.26557759478440424 2.134999780674306 0.07037905732039489 0.05227614709801372 236.59400731320176 -2.374003740191453 -0.37237427590125094 FYGDEEKDKGLQTSQDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 FYGDEEKDKGLQTSQDAR 18 2 P27797 P27797 CALR Calreticulin 0 72.421 0.012313 329720000.0 323540.0 505930.0 544310.0 607300.0 675280.0 804770.0 1161000.0 757320.0 1382400.0 775490.0 False True 321798.09658867365 522769.57420885714 620944.1167726672 684184.1177321279 761272.9053018595 749138.1441248085 1104837.9945493012 813835.0639930397 1041726.0432109609 725997.5642696073 0.44324955402904126 0.720070699871826 0.8552977962086834 0.9424055277932702 1.0485887870267734 1.0318741838734429 1.5218205251980808 1.1209886975472179 1.4348891710938363 1.0 19.469605182407076 4.269099127427876 0.5583177246588941 1.2684403235506638 0.1971945125134775 0.7251802675997734 0.1564469314671707 1.2200646111466587 0.41681411334703267 0.08545671797679308 0.7959271632057278 18582.285461256204 -4.269099127427876 -1.0712458110371863 down FYHDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYHDAK 6 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 118.06 0.022193 345420000.0 578950.0 651660.0 609640.0 612860.0 608980.0 697990.0 688820.0 640270.0 885670.0 770690.0 False True 575832.9975273925 673350.1091632114 695472.0129141278 690448.0131620491 686529.9932927471 649739.5941917265 655499.1450520667 688050.1986251831 667408.4958699737 721503.9043790945 0.7981010137747456 0.9332591342560747 0.96391995759556 0.9569567246572682 0.9515263730742456 0.9005351048666518 0.9085178071436362 0.9536333683700565 0.925024094560273 1.0 19.46064767624007 4.736350892889466 5.040042397809906 0.9416244666142285 0.7914040747247381 0.7196277213103318 0.02728567501475263 0.08462201560855964 6.871941830426903 0.006429489297276394 0.04429896671172971 54494.27673805411 -4.736350892889466 -0.15022039188949043 FYHDWNDK ddPTM_BT-474_Trastuzumab_2h_R1 3 FYHDWNDK 8 0 J3KQ32;Q9NTK5;Q9NTK5-3;Q9NTK5-2;C9JCJ9 J3KQ32 OLA1 Obg-like ATPase 1 0 ;; 163.99 0.00033272 1491260000.0 2384980.0 2020830.0 1705870.0 1531100.0 1635370.0 2189450.0 1895080.0 1836620.0 2590990.0 2089530.0 False True 2372139.5326761864 2088092.10493247 1946041.668312156 1724937.1030127793 1843624.6759025939 2038098.4749109244 1803407.7404913742 1973677.9105673912 1952475.2319872428 1956174.4064633627 1.212642147263782 1.0674365731568924 0.9948201253846655 0.881791059791726 0.9424643681110972 1.0418797363756922 0.9219053958239947 1.0089478238986234 0.9981089751180173 1.0 20.89960357157896 4.606144404260277 2.030476183772498 0.9708061762526194 1.2454745147131543 0.7372717937631297 0.04424798541710046 0.26959627718281653 1.4991636085818758 0.01160638007387429 0.12364287576300143 40377.96286265379 -4.606144404260277 0.27466833846053484 FYHDWNDKEIEVLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYHDWNDKEIEVLNK 15 1 J3KQ32;Q9NTK5;Q9NTK5-3;Q9NTK5-2;C9JCJ9 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 296.85 2.5555e-44 4717800000.0 4147710.0 3320430.0 3273620.0 3181920.0 2886130.0 4454220.0 4097100.0 3613320.0 6028890.0 4330330.0 False True 4125379.190213906 3430948.5053076786 3734517.2411848707 3584750.7457503937 3253661.5480672545 4146310.2555060545 3898907.6205580826 3882964.2864671852 4543150.842487077 4053964.632017971 1.0176159795849986 0.846319298942633 0.921201238829238 0.8842580217494366 0.8025875515464613 1.0227790895753612 0.9617517601818089 0.9578189843591048 1.1206685935554401 1.0 21.950902071687235 2.712645454252614 24.94896137164908 1.0014572525851635 0.8926513688750277 0.43300384664676594 0.0670140055437517 755.4945972603018 727326.5523349987 0.021234812971400615 0.020026999846061155 515.9949535748979 -2.712645454252614 -0.10880588371013578 FYIDPYK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYIDPYK 7 0 Q9NY12-2;Q9NY12 Q9NY12-2 GAR1 H/ACA ribonucleoprotein complex subunit 1 0 94.887 0.032269 313170000.0 823330.0 791310.0 731700.0 760270.0 774830.0 911650.0 767510.0 809900.0 1159400.0 885320.0 False True 818897.2827605617 817648.2749930037 834716.999949589 856520.1040477606 873500.0077227819 848629.7812932665 730382.6091270745 870338.8505888699 873681.4051640532 828818.1196394146 0.9880301399742937 0.9865231654789709 1.007117219291418 1.033423478266134 1.053910365886796 1.0239035093278017 0.8812338821029089 1.0500963118030278 1.0541292286710102 1.0 19.660696018035814 4.177987908960234 4.661890650925162 1.0125926375703078 0.9870939164653882 0.04510468254922406 0.04777362707385109 0.7471184564256397 32.102368485690086 0.012449832529846184 0.029596893930301908 15065.651218537341 -4.177987908960234 -0.025498721104919575 FYIGEMVLAIDSIHQLHYVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 FYIGEMVLAIDSIHQLHYVHR 21 0 Q9Y5S2;A0A0U1RRC3 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 0 85.927 0.00098273 96298000.0 2202.3 2698.9 2694.4 3094.6 1854.4 2899.4 2349.9 3194.7 1428.0 2204.7 False True 2190.4430614985317 2788.7312549804983 3073.7480998553647 3486.376042703513 2090.5468481100725 2698.9713024534612 2236.2263595102495 3433.104736357894 1076.088534219655 2063.994158461367 1.0612641767995252 1.351133307983486 1.4892232554314653 1.6891404602145192 1.0128647116271392 1.3076448358097323 1.083446070010816 1.6633306457209887 0.5213621995044018 1.0 11.011223172297894 1.2336268579511467 24.99999738522949 0.7606810572840665 1.3420098172657915 0.45898429932674234 0.24804038989589733 109.62963372013446 555475.5926687327 0.2065129660140634 0.057996080816365606 17.12485322717064 -1.2336268579511467 0.581328759981725 FYIHEVQELIDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 FYIHEVQELIDIR 13 0 Q5GLZ8-6;Q5GLZ8-3;Q5GLZ8-2;Q5GLZ8 Q5GLZ8-6 HERC4 Probable E3 ubiquitin-protein ligase HERC4 0 95.264 0.0018644 0.0 76870.0 55171.0 50564.0 52386.0 44549.0 58328.0 61419.0 44721.0 79843.0 53915.0 False True 76456.14046105996 57007.33338342621 57682.97168983324 59018.0622287424 50222.05108738974 54295.9226493431 58447.928326635236 48058.30810863664 60166.76249138655 50474.09854104619 1.5147599000482364 1.1294373754306302 1.1428232173958432 1.1692742205340854 0.9950064000954573 1.0757185213558387 1.1579786467925648 0.9521380172754349 1.1920324330796748 1.0 15.62325561904427 7.576466642981614 1.030610400333962 1.0707326922900309 199.99999998168317 0.7282173885077307 0.07802480444360606 363.81801927746614 1.136676979541483 0.02182742935860396 170099.5021417037 37710877.91642469 -7.576466642981614 198.92926728939315 FYIPGGDVTCHYTFTQHFIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 FYIPGGDVTCHYTFTQHFIPR 21 0 Q13137;Q13137-3;Q13137-4;Q13137-2;D6RJE7;D6RF70;I3L4E1;I3L493;D6RBI4 Q13137 CALCOCO2 Calcium-binding and coiled-coil domain-containing protein 2 0 92.098 0.0011091 183550000.0 48511.0 70845.0 58915.0 70977.0 63809.0 45927.0 66421.0 59963.0 68105.0 55263.0 False True 48249.82216607878 73203.03299829323 67209.71990163997 79962.68092256426 71934.69792442587 42752.17459052912 63207.962477139605 64437.7435459444 51321.43531024491 51736.06802696533 0.9326147889888059 1.4149322859274716 1.29908828530629 1.5455886767600304 1.3904167956276232 0.8263514453445955 1.2217388156400872 1.2455091003892842 0.9919856159825615 1.0 15.65888279202679 2.7960724376416963 24.999073885858135 1.1001728269791267 1.3337518667060082 0.3106846668284453 0.18692428392860058 374.5470091046149 162806.1347936369 0.05739997990884483 0.060881843620002915 625.2769764226823 -2.7960724376416963 0.23357903972688154 FYNELTEILVR ddPTM_BT-474_Trastuzumab_2h_R1 2 FYNELTEILVR 11 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ; 195.51 1.4806e-07 259950000.0 198707.0 212422.0 208046.0 206250.0 215920.0 234740.0 228830.0 202734.0 249520.0 223740.0 False True 197637.18359042294 219492.3378581892 237337.06843175093 232361.2288527113 243416.1321418933 218512.97631852297 217760.61868451047 217863.0405423925 188029.13939670072 209460.7216465486 0.9435524810418771 1.0478925888003399 1.1330862730065538 1.1093307949392337 1.162108724864618 1.043216955431145 1.0396250761131598 1.040114054939724 0.8976820948511183 1.0 17.67632020762868 1.451089029167876 3.21059646300311 0.9498871143615586 1.0736652526761745 0.3561478819582228 0.06193813995503092 0.2522944021287002 4.856957350605743 0.04821681802371569 0.016712950440758455 28.254591268594318 -1.451089029167876 0.12377813831461593 FYPPKVELFFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYPPKVELFFK 11 1 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 87.363 0.012568 111180000.0 131110.0 135970.0 133300.0 109800.0 99348.0 143160.0 158570.0 113190.0 223000.0 158930.0 False True 130404.1183276904 140495.67925439935 152067.48133562936 123700.66874195242 111999.3789182698 133263.6861623912 150899.3633037749 121636.81256717391 168044.638046907 148786.95133318126 0.8764486210600159 0.9442741987486851 1.022048506089099 0.8313946057335856 0.7527500087522299 0.8956678322144761 1.014197562028563 0.8175233881551242 1.1294312877652937 1.0 17.182888481579155 1.2358278888293737 24.99992790144834 1.0647156647227625 0.8955197093756913 0.39290122672506245 0.08472875640607087 75.98710196135549 695089.1897718366 0.07114180421729095 0.02087913213772685 17.211863326048427 -1.2358278888293737 -0.16919595534707121 FYQNNKDFIDSLGLLHEQNMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYQNNKDFIDSLGLLHEQNMAK 22 1 Q7L2H7;Q7L2H7-2;H0YCQ8 Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M 0 128.13 1.0295e-05 380960000.0 81427.0 77686.0 87962.0 76457.0 87082.0 112680.0 112440.0 99940.0 129680.0 115530.0 False True 80988.60607939027 80271.73154782137 100346.28502058987 86136.44836068717 98171.37652454765 104890.6968201889 107000.8476374877 107398.03028503705 97722.10162297255 108156.77648979065 0.7488075061763246 0.742179400616646 0.9277854636326182 0.7964036203392021 0.9076766126976283 0.9698023575072983 0.9893124694557437 0.9929847557464399 0.9035226898815437 1.0 16.722764533652025 4.089879411421318 0.510396148429844 0.9877722266714928 0.6564173041190571 0.7144698538948098 0.05091519486001685 1.2500629614084469 0.39948524573845523 0.03374945059828603 0.23146504167408397 12299.272150850189 -4.089879411421318 -0.3313549225524357 FYRPENTHK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYRPENTHK 9 1 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 78.556 0.017687 273000000.0 146400.0 165970.0 169400.0 141330.0 151560.0 172140.0 159870.0 156570.0 242400.0 166280.0 False True 145611.79866656903 171494.21111901652 193250.04754880432 159222.36350910866 170860.2676335 160240.36697397332 152136.47733729272 168254.04844635044 182663.76799358876 155667.86804052987 0.9354004811619657 1.1016673721924815 1.2414254141290706 1.0228338417768614 1.0975949615306264 1.0293734281261753 0.9773145816944206 1.0808527833280508 1.1734198604559176 1.0 17.24811165775826 FYS(ph)DSHHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYSDSHHLK 9 0 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 FYS(0.999)DS(0.001)HHLK;FYS(0.988)DS(0.012)HHLK 102.53 0.0059661 155536000.0 187976.0 169820.0 162368.0 185130.0 162195.0 209710.0 181673.0 135770.0 237170.0 160591.0 True False 186963.95810209695 175472.3560416422 185228.00307204414 208567.43901819357 182849.57184491624 195213.24130424066 172884.7829317443 145901.8468260905 178722.631415179 150341.9448911278 1.243591455714435 1.167155022297423 1.2320447444402796 1.3872870885715267 1.2162246003756922 1.298461593307224 1.1499437702295339 0.9704666713720337 1.1887742409119657 1.0 17.197888046858615 2.0135352509382223 5.171104316703256 1.051190092383328 1.2549626556164424 0.5958124317408767 0.0758190725128707 0.11655332187612685 9.202162030503546 0.030424084960779297 0.020758186207128358 103.16568138553254 -2.0135352509382223 0.20377256323311443 FYS(ph)DSHHLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 FYSDSHHLKR 10 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 FYS(0.911)DS(0.089)HHLKR 69.229 0.027087 249600000.0 127490.0 139280.0 153550.0 176070.0 139310.0 157740.0 145610.0 107400.0 211910.0 167730.0 True False 126803.60800547064 143915.8506034621 175168.5053194743 198360.44394713614 157050.3027449384 146835.80508001955 138566.2880157825 115414.73336614946 159687.6199485205 157025.32779912237 0.8075360184421112 0.9165136135717493 1.1155430004487041 1.2632385279965312 1.0001590504294184 0.9351090498461626 0.8824454625119208 0.7350071162646827 1.016954539670211 1.0 17.260637755484304 2.5871404599011947 2.813455149100157 0.872435756870395 1.0337114645055674 0.11355796653340455 0.13462957500531272 0.4462995126090508 6.8636222613616935 0.051578123773723325 0.04709664101979707 386.4919564091023 -2.5871404599011947 0.1612757076351724 FYS(ph)TSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYSTSLK 7 0 A0A0C4DH43 A0A0C4DH43 1 FYS(0.333)T(0.333)S(0.333)LK;FYS(0.333)T(0.333)S(0.333)LK 81.78399999999998 0.027549 161057000.0 146199.0 539180.0 525440.0 678430.0 563320.0 347720.0 356770.0 279950.0 124329.0 374740.0 True False 145411.88082823608 557126.2803588067 599417.3847936471 764319.1684390052 635055.462940771 323682.93484483584 339511.67210624827 300841.2905572962 93689.7838732461 350823.7723689452 0.4144869654822397 1.588051677903123 1.7085996788246935 2.178641325466411 1.8101836675791527 0.9226368346111774 0.9677556050825413 0.8575282356889865 0.26705654306321314 1.0 18.42038698481004 2.632360625730017 4.93618591722894 0.7986589250330062 1.5855595181631066 0.38707777710898306 0.46361335307233065 0.24417795142239376 9.216931007426224 0.15827928501909988 0.14876097511104153 428.9045226317701 -2.632360625730017 0.7869005931301004 FYSHMVRPGDLTGHSDFHLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYSHMVRPGDLTGHSDFHLFK 21 1 B9A044;B8ZZ50;O60573-2;O60573;B4E1E4;B9A023;B8ZZL3;C9JEL3 B9A044 EIF4E2 Eukaryotic translation initiation factor 4E type 2 0 129.02 5.7791e-06 560280000.0 176040.0 216910.0 215360.0 253490.0 203760.0 217160.0 240350.0 87359.0 266840.0 201180.0 False True 175092.22019988252 224129.7182251359 245680.81605732327 285581.80800908443 229707.62821986002 202148.2403396543 228723.3522738367 93878.17218001359 201080.85747281017 188340.52016113634 0.9296577287249758 1.1900238888231796 1.304450130259431 1.5163057198990024 1.219639979879697 1.0733125307645144 1.2144139353451422 0.4984491499741814 1.0676452273826882 1.0 17.522983893648824 1.7725465549867048 24.999999991973404 0.8053278310402606 1.2171980182197102 0.38445892627857925 0.20052310286096026 29.73131317477896 21880.531597402744 0.09264488446230044 0.05140058072255733 59.23065768536588 -1.7725465549867048 0.41187018717944957 FYTAEIVSALEYLHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYTAEIVSALEYLHGK 16 0 E9PER6;O15530-5;O15530-2;O15530;O15530-3;Q6A1A2 E9PER6;Q6A1A2 PDPK1;PDPK2P 3-phosphoinositide-dependent protein kinase 1;Putative 3-phosphoinositide-dependent protein kinase 2 0 ; 224.16 8.0569e-15 400380000.0 408290.0 456890.0 441190.0 392740.0 434870.0 448370.0 447560.0 397720.0 585600.0 458780.0 False True 406091.81200528325 472097.3074541623 503305.7171077754 442460.8437314608 490248.1168235687 417375.23724945093 425909.8129547669 427399.8859812383 441286.7266379762 429500.26761868136 0.9454983910878942 1.0991781450373843 1.1718402875469682 1.0301759442075276 1.14143844319748 0.9717694462998676 0.99164039015896 0.9951097081985806 1.027442262340472 1.0 18.71229950473425 2.7230662793302214 24.89244953423935 0.9962844575410452 1.0814215586823444 0.3162615238874944 0.05899376364782848 894.1530861697561 1436500.6167182291 0.018692824893966786 0.01768669165077598 528.5259059662669 -2.7230662793302214 0.08513710114129913 FYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQK 34 1 P04040 P04040 CAT Catalase 0 ; 234.39 4.194600000000001e-47 188484000.0 75549.0 101449.0 91550.0 101270.0 105979.0 119775.0 129347.0 109480.0 131665.0 108866.0 False True 75142.25257828292 104825.66863778434 104439.4442331348 114090.77161655294 119474.7974632536 111495.2361700224 123089.99145647582 117649.95352817554 99217.92497061 101918.0786751281 0.7372808981005693 1.0285286967773835 1.024739139422396 1.1194360519709783 1.1722630471095214 1.093969172293978 1.2077346144724221 1.1543580398841116 0.9735066266984383 1.0 16.637050460204968 5.266378804568073 1.1071638262991468 1.1179498166189827 1.4166295170583152e-19 0.6804487461979793 0.07254733837905435 2.4876536533114084 1.1186046549865356 0.020412421458521467 4.3025388617440985 184662.53985541328 -5.266378804568073 -1.1179498166189827 FYTLIPHDFGMK ddPTM_BT-474_Trastuzumab_2h_R1 2 FYTLIPHDFGMK 12 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 132.17 0.0001857 996320000.0 1561680.0 1729580.0 1856410.0 1388000.0 1001500.0 1507640.0 1775970.0 1301530.0 2995800.0 1568220.0 False True 1553272.0883989595 1787148.0247468103 2117776.391795018 1563720.6576851534 1129035.088644434 1403420.3954028203 1690059.5462357649 1398656.7776354237 2257525.231663335 1468134.8569793082 1.0579900620266052 1.217291460829336 1.442494455960503 1.0651069622463112 0.7690268256197029 0.9559206286337768 1.151160970125774 0.9526759554726221 1.5376824689716855 1.0 20.4855530637719 5.0834577987851945 15.874092603813905 1.1080650901061315 0.00017829890451560512 0.004171206275184192 0.2204463375805611 18857491.558449216 50182823.565074235 0.053626612856547726 718916692.3794708 121187.49228788301 -5.0834577987851945 -1.107886791201616 FYVEDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 FYVEDLK 7 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 105.95 0.018175 123790000.0 248590.0 256570.0 236150.0 223740.0 225470.0 263380.0 287880.0 246530.0 352820.0 273780.0 False True 247251.61906094576 265109.7773501598 269397.8673474036 252065.4610594207 254182.26803460813 245173.16052983125 273954.1445916045 264927.32045397424 265872.2385457833 256307.12600514942 0.9646693126120038 1.0343441537588525 1.0510744338102842 0.9834508505017394 0.9917097194929392 0.9565600627307784 1.0688510649762446 1.033632285544225 1.037318948909917 1.0 17.967514064300694 2.2259345866921034 24.999322947730946 1.038422356586099 1.0002729372051933 0.25657447604493255 0.03114921776356537 328.0989146024558 649626.3317180681 0.0118886232638433 0.008842138224227995 168.2420636281188 -2.2259345866921034 -0.03814941938090577 GAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 33 0 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 GAAAADLLS(0.1)S(0.781)S(0.12)PESQHGGTQSPGGGQPLLQPTK 212.41 4.779199999999999e-28 2113400000.0 1343100.0 1621300.0 1614200.0 1731100.0 1888600.0 2000600.0 2052200.0 1961000.0 1861700.0 2031900.0 True False 1335868.8988324367 1675263.9904034524 1841465.3291220788 1950257.0825063202 2129102.0153907887 1862303.2309058423 1952927.2458346891 2107339.7777562304 1402908.9805019137 1902222.4024028876 0.7022674620722408 0.8806877620026232 0.9680599528193652 1.0252518738307126 1.1192708132872933 0.9790144562241411 1.0266555810549551 1.1078303857079164 0.7375104923219067 1.0 20.859254501162003 4.6397875946343285 1.5684043207351306 1.014366005450703 0.6228517137465717 0.45150837886150685 0.09932927094384356 0.7174544995292119 1.9463303080803047 0.025785656091886787 0.40704513820258864 43630.239265222204 -4.6397875946343285 -0.39151429170413143 GAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 40 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 GAAAADLLS(0.058)S(0.471)S(0.471)PESQHGGTQSPGGGQPLLQPTKVDAAEGR 177.31 4.355800000000001e-24 318500000.0 33320.0 51045.0 51479.0 65263.0 64944.0 54871.0 69425.0 48144.0 65279.0 70300.0 True False 33140.60882220002 52744.00196764589 58726.79573651065 73525.28910843383 73214.23344675396 51077.89692244042 66066.64752074516 51736.749750278475 49191.86514378497 65813.39381314203 0.5035541688716605 0.8014174457770272 0.8923228591318096 1.117178204138621 1.1124518765074547 0.7761018534838249 1.003848057255977 0.786112776635861 0.7474445898269727 1.0 16.006093599093784 4.6989762370826105 2.1702996157796526 0.9258194975860002 0.4138667594194255 0.5148432955414299 0.1255478216707802 0.511000931109624 2.926828969185232 0.03384496819518775 0.4905308631945027 50000.717576618634 -4.6989762370826105 -0.5119527381665747 GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK ddPTM_BT-474_Trastuzumab_2h_R1 4 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 33 0 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 GAAAADLLS(0.015)S(0.14)S(0.845)PESQHGGTQSPGGGQPLLQPTK;GAAAADLLS(0.021)S(0.133)S(0.845)PES(0.001)QHGGTQSPGGGQPLLQPTK;GAAAADLLS(0.051)S(0.33)S(0.618)PES(0.001)QHGGTQSPGGGQPLLQPTK;GAAAADLLS(0.02)S(0.154)S(0.826)PESQHGGTQSPGGGQPLLQPTK 287.21 1.1736999999999996e-74 7920650000.0 1606070.0 1895680.0 2026200.0 2125570.0 2266820.0 2486080.0 2355070.0 2339690.0 2380970.0 2617240.0 True False 1597423.0975711516 1958776.5628372396 2311471.3479538807 2394666.944060396 2555486.090505219 2314223.141202834 2241146.266858932 2514289.548505088 1794211.846863426 2450205.502468103 0.6519547425561081 0.7994335825563019 0.9433785638084337 0.9773331019166503 1.0429680644872712 0.9445016505234791 0.9146768565336317 1.026154559677722 0.7322699443194084 1.0 21.224471324657436 4.495703404483835 2.145366393732723 0.9564291012082552 0.6362183690453653 0.5694978287205519 0.08197105492773395 0.27738035705203573 2.0420067354600597 0.020212057418056855 0.14030924217276403 31311.466199177314 -4.495703404483835 -0.32021073216288987 GAAAAPPLTLEGPVQSHHGTPALT(ph)QGPQSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAAAAPPLTLEGPVQSHHGTPALTQGPQSPR 31 0 Q96PG8-1;Q96PG8 Q96PG8-1 BBC3 Bcl-2-binding component 3 1 GAAAAPPLTLEGPVQS(0.001)HHGT(0.002)PALT(0.651)QGPQS(0.347)PR 168.15 2.0111e-12 289300000.0 50447.0 82988.0 89491.0 106660.0 91044.0 102840.0 79850.0 59439.0 55492.0 75465.0 True False 50175.39895718858 85750.20541269457 102090.5549302837 120163.14506390369 102637.91373993373 95730.91285932047 75987.35044337783 63874.64000512626 41816.74015470386 70648.75909116305 0.7102092039924401 1.2137538792726008 1.4450438513512898 1.70085287568673 1.452791458198053 1.3550261050699015 1.075565252962561 0.9041155262572175 0.5918963148488536 1.0 16.108376600140545 1.9065918529582424 2.12830315356704 0.7987346543617031 1.3379184429603195 0.41156333092009734 0.25688111880537784 0.31000153085129134 2.5898170573974895 0.1630359531992178 0.07956369813977895 80.6476752548606 -1.9065918529582424 0.5391837885986164 GAAAHPDSEEQQQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GAAAHPDSEEQQQR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 ;;; 206.18 1.1198999999999998e-08 392526000.0 464365.0 552695.0 521643.0 582076.0 566685.0 544515.0 538196.0 473017.0 542498.0 544514.0 False True 461864.91043580143 571091.1189638171 595085.8001977629 655766.7619184034 638848.9757448529 506873.95970043645 512161.40337162354 508315.9304716565 408806.6370007669 509762.65033811046 0.9060391343490154 1.12030788953453 1.1673781902284526 1.286415867234394 1.253228292267241 0.9943332634594589 1.0047056272795232 0.9971619735861496 0.8019548641502424 1.0 18.959466147236018 2.594475129579505 5.830621275755425 0.9624849730449853 1.153629841806863 0.4222069720239554 0.10976112531200645 0.2456517711955514 10.863068408590568 0.0378131411639419 0.035477338581547085 393.0747343431904 -2.594475129579505 0.19114486876187764 GAAATTTTTEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAAATTTTTEHR 12 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 0 ; 121.02 0.00038366 78616000.0 46736.0 63322.0 64122.0 69629.0 54932.0 57981.0 68778.0 54597.0 79414.0 65612.0 False True 46484.37856885777 65429.6344910427 73149.8202415848 78444.02426077775 61927.26459252717 53972.909942592996 65450.94538252517 58671.30537794851 59843.48379308101 61424.58598674065 0.7567715406155455 1.0652026943277502 1.190888291170171 1.2770785997273304 1.0081836710449303 0.8786857750126928 1.0655496383264784 0.9551762447469085 0.9742594570519215 1.0 15.906528608133812 3.0151660532873343 24.951672716374585 0.9747073576337834 1.0881985323290035 0.10406226471249203 0.13232058527210822 487.67431502444487 802330.9133688075 0.03956346351514408 0.047271522432056706 1035.538030849805 -3.0151660532873343 0.11349117469522019 GAADVEKVEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GAADVEKVEEK 11 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;; 144.57 3.3425e-05 823020000.0 897230.0 874480.0 761680.0 767520.0 783270.0 1075500.0 1109480.0 987950.0 1649930.0 1047610.0 False True 892399.4133716241 903586.5381656775 868917.9233587575 864687.9533044012 883014.7916949821 1001153.2164546796 1055810.213774813 1061675.8457084487 1243326.859429297 980750.6328959541 0.9099146953762883 0.9213213918583698 0.8859723299826199 0.881659337553682 0.9003458800608894 1.0208030286949505 1.0765327886225509 1.0825135463573845 1.26772985683222 1.0 19.90352683573644 2.436310946262111 1.6012642943555155 1.1212030329336231 0.8963323166479826 0.7071661894606458 0.06304658479988595 0.19761258039253202 1.0278619929123485 0.028893455095998145 0.021435201084863777 273.0932376584549 -2.436310946262111 -0.22487071628564048 GAAEEAELEDS(ph)DDEEKPVKQDDFPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GAAEEAELEDSDDEEKPVKQDDFPK 25 2 Q9UBB9;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK 328.19 4.6253999999999975e-88 1644470000.0 1093880.0 587260.0 530931.0 439952.0 444520.0 792310.0 789670.0 761420.0 1546670.0 757030.0 True False 1087990.6716214942 606806.594093833 605681.4698650194 495649.8780907056 501126.9871235381 737539.4745971238 751470.6452676529 818241.0268124173 1165513.9028161871 708715.6972740102 1.5351581400077912 0.8562059460907127 0.8546183923887963 0.6993634824192033 0.707091699889057 1.040670437290977 1.0603273613920146 1.1545405724180842 1.6445436545277554 1.0 19.434847477937456 1.7762045328821663 1.9325285708877198 1.321745758784058 0.9214410160701466 0.2208189594139739 0.26751708433032284 0.42838335744104106 3.155902198118426 0.18206260748592926 0.07737428797964092 59.73165291794288 -1.7762045328821663 -0.40030474271391137 GAAS(ph)PVLQEDHCDSLPSVLQVEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 GAASPVLQEDHCDSLPSVLQVEEK 24 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK 405.85 9.671999999999994e-158 2138780000.0 1389851.0 1291348.0 1125546.0 1126208.0 1096042.0 1469114.0 1338940.0 1323677.0 1915330.0 1489625.0 True False 1382368.1966429634 1334329.7375436495 1284013.0933787886 1268785.8173272936 1235616.4519500958 1367557.6071023708 1274170.3569524898 1422456.499235614 1443322.5856070959 1394555.8571678745 0.9912605433032549 0.9568134045583984 0.9207326381220893 0.9098135516091839 0.8860286560765234 0.9806402519291462 0.913674665954314 1.0200068300773562 1.0349693618857685 1.0 20.411374290169572 1.6798799596647338 6.028711523655012 1.0212252580012982 0.9359149935372736 0.5775929106101594 0.031769201906415 0.09696132445416383 7.578692361873186 0.016821838718985037 0.008431360355005657 47.84978157694744 -1.6798799596647338 -0.08531026446402457 GAASTLVPGVSETSAS(ph)PGSPSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 GAASTLVPGVSETSAS(0.799)PGS(0.201)PSVR 341.54 4.120699999999998e-87 619680000.0 330800.0 438300.0 357940.0 400710.0 415650.0 387670.0 382570.0 351720.0 459720.0 419130.0 True False 329019.00955533504 452888.55054205545 408334.8407297472 451439.8449142781 468580.56374943495 360871.2853770208 364063.6275406768 377967.132397971 346428.16593239474 392380.76456475374 0.8385197218326887 1.1542068099194915 1.0406596795913032 1.1505147185668883 1.1941986102942774 0.9196966772245202 0.9278325045941342 0.9632662111182464 0.8828877386909328 1.0 18.581894793396526 2.7113716848899636 24.77426525364979 0.9378312974213817 1.0822044455142479 0.33763587029418285 0.09563527949998069 722.5605379150325 658388.5599180415 0.030012543474774743 0.02830382870849293 514.4837770004465 -2.7113716848899636 0.14437314809286617 GAASTLVPGVSETSASPGS(ph)PSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 GAASTLVPGVSETSAS(0.019)PGS(0.981)PSVR;GAASTLVPGVSETSAS(0.211)PGS(0.788)PS(0.001)VR;GAASTLVPGVSET(0.002)S(0.011)AS(0.053)PGS(0.919)PS(0.016)VR 240.94 2.9666999999999997e-37 1284600000.0 788490.0 961490.0 843890.0 940950.0 977360.0 982230.0 919790.0 913280.0 1098800.0 990820.0 True False 784244.8574494743 993492.6134170203 962702.3767766263 1060074.1735222216 1101821.0027334236 914330.7520207155 875296.2437609823 981433.5911418715 828015.4631656557 927585.0193163191 0.8454695161285654 1.0710528875825083 1.0378589096729813 1.1428323565462002 1.1878382895246906 0.9857109946586107 0.9436291289030556 1.0580524380021161 0.8926572183927123 1.0 19.823119994795267 2.536031597942219 24.999762966847594 0.9830806504658713 1.0640224954875679 0.15664036228789724 0.09256379554198661 508.2506886524611 215685.13862231074 0.03045441857679586 0.028712639063945992 343.5829450379073 -2.536031597942219 0.08094184502169655 GAAVDEYFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAAVDEYFR 9 0 K7EQA8;Q86X55-2;Q86X55-1;Q86X55 K7EQA8 CARM1 Histone-arginine methyltransferase CARM1 0 ; 134.48 0.00057639 343950000.0 968640.0 1280900.0 1207340.0 1191450.0 1068400.0 1250150.0 1323240.0 1035720.0 1779400.0 1248130.0 False True 963424.949866021 1323533.982179599 1377322.9776125937 1342287.4478378792 1204454.4070970677 1163730.0730365573 1259229.825932314 1113010.6856795952 1340890.712738414 1168473.274822147 0.8245160335504153 1.1327036832580135 1.178737252524869 1.1487532293301173 1.030793286462112 0.9959406844060582 1.0776710542429657 0.952534139772265 1.1475578788419534 1.0 20.156193306677707 3.047308161245435 24.966168905040426 1.0272842068686283 1.0840699711191906 0.021653279271615422 0.10353661669324302 363.5361486764021 191848.31589587653 0.029740519491564952 0.03554680398143822 1115.0854813492472 -3.047308161245435 0.056785764250562254 GADDDRPSWR ddPTM_BT-474_Trastuzumab_2h_R1 4 GADDDRPSWR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;; 164.97 5.4676e-06 5606200000.0 5343980.0 6759170.0 5900830.0 6457600.0 6343600.0 6550790.0 6037680.0 5694280.0 6426190.0 6086480.0 False True 5315208.605451989 6984144.887445443 6731615.573066189 7275131.497887361 7151419.858537017 6097949.306200973 5745614.35222258 6119216.088567948 4842541.581034319 5698035.6355023105 0.9328142092223729 1.2257109878235706 1.1813923260016193 1.2767788696439104 1.2550675910096487 1.0701844804562033 1.0083500209131415 1.0739167811519852 0.8498615822727167 1.0 22.44203321362576 2.503005880445272 3.915525614651676 1.0008653874925535 1.183025297585401 0.42663489184838077 0.10344379637835585 0.22590437550869188 7.61995882889429 0.036013088252046715 0.03196989280585915 318.4240636770893 -2.503005880445272 0.1821599100928475 GADEDDEKEWGDDEEEQPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GADEDDEKEWGDDEEEQPSK 20 1 A0A499FI31;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 235.84 1.361e-29 266260000.0 188610.0 129610.0 121090.0 107750.0 134990.0 154550.0 165900.0 169330.0 259550.0 169230.0 False True 187594.54471654075 133923.99049910047 138138.4194668521 121391.13895214352 152180.17635158447 143866.32227156733 157874.78320045548 181966.2644403176 195587.38029181503 158429.5965149077 1.1840877515514516 0.8453217924246792 0.871923065548259 0.7662150357160129 0.9605539602397765 0.9080773128020306 0.9964980450202686 1.1485623169102448 1.234538145613537 1.0 17.273482347459904 1.9135085570119565 2.7947814645747804 1.143951431320125 0.9118259085618944 0.38140448621835843 0.11539457887814256 0.2507772733138581 3.5191112925557917 0.060348793690436414 0.03195346541364068 81.94237683310867 -1.9135085570119565 -0.2321255227582305 GADFLVTEVENGGSLGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 GADFLVTEVENGGSLGSK 18 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;; 303.3 2.2128e-49 471300000.0 795870.0 750980.0 689820.0 623180.0 629660.0 886870.0 809600.0 714470.0 1018390.0 850940.0 False True 791585.1243494704 775975.9153230027 786940.6599770748 702074.5241039149 709843.468712785 825562.7643674214 770436.5550276606 767787.3794051475 767421.4302268593 796632.2806736141 0.993664383873729 0.9740703887455516 0.9878342606348511 0.8813031321179411 0.89105536636371 1.0363159821609844 0.9671169166986265 0.96379144811446 0.9633320778539695 1.0 19.603554415379385 2.739332014359531 24.999998557242076 0.9806568460570458 0.9459439124275654 0.1957591628507298 0.040316677077842394 154.55199477322674 5008967.674863155 0.013656084510940298 0.013741270104205406 548.6962781589465 -2.739332014359531 -0.03471293362948047 GADIMYTGTVDCWR ddPTM_BT-474_Trastuzumab_2h_R1 2 GADIMYTGTVDCWR 14 0 P12236;P12235 P12236;P12235 SLC25A6;SLC25A4 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 0 ; 251.34 1.1484000000000002e-18 334133000.0 104013.0 132613.0 153031.0 117637.0 158313.0 233545.0 124981.0 77630.0 142308.0 150483.0 False True 103453.00556493078 137026.9435387487 174576.434630703 132529.83213840652 178473.22215533326 217400.58385579524 118935.1915562155 83423.14479715264 107238.10022950325 140879.04610502187 0.73433919681575 0.9726566677389231 1.2391937584568862 0.9407348772052927 1.266854277408195 1.5431718901172033 0.8442362071897636 0.5921614825171568 0.7612068877124557 1.0 17.10409752023324 2.0159634507838624 24.994207611455952 0.7339051703285586 1.1207375344784172 0.3164504922013992 0.22563431801084538 244.1847009306915 382322.00058133394 0.08680118566853033 0.0640891266560692 103.74411035074075 -2.0159634507838624 0.38683236414985855 GADNDGS(ph)GS(ph)ESGYTTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 GADNDGS(1)GS(0.998)ES(0.002)GYTTPK;GADNDGS(1)GS(1)ESGYTTPK 252.64 7.9347e-27 413020000.0 1367700.0 1120120.0 1019390.0 1022370.0 1121740.0 1385320.0 1418140.0 1337340.0 1956850.0 1457290.0 True False 1360336.4551657569 1157402.517073162 1162911.2513032805 1151801.9371740427 1264586.9399261156 1289556.0890925103 1349539.1503791083 1437139.1016749206 1474610.5379465912 1364284.5045512617 0.9971061392456382 0.8483586181709606 0.8523964374174164 0.8442534774320343 0.9269231862616966 0.9452251966437668 0.9891918774104941 1.0534013227304244 1.0808673213155182 1.0 20.379713101153104 2.301417653492704 1.3862124715215185 1.051148125392089 0.8836950619704298 0.6668523373635622 0.04672235947997314 0.23478620206276526 0.8933805908812665 0.026671187954027318 0.016590718362161663 200.1786027274104 -2.301417653492704 -0.1674530634216591 GADNDGS(ph)GSESGYTTPK ddPTM_BT-474_Trastuzumab_2h_R1 7 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 GADNDGS(0.994)GS(0.006)ESGYTTPK;GADNDGS(0.988)GS(0.012)ESGYTTPK;GADNDGS(0.999)GS(0.001)ESGYTTPK;GADNDGS(0.554)GS(0.446)ESGYTTPK;GADNDGS(0.998)GS(0.002)ESGYTTPK;GADNDGS(0.938)GS(0.043)ES(0.019)GYTTPK;GADNDGS(0.997)GS(0.003)ESGYTTPK 324.31 5.9106e-59 5415000000.0 6134120.0 5859710.0 5572861.0 5294090.0 5695810.0 6988400.0 7032260.0 6694960.0 8419490.0 7391070.0 True False 6101094.579484803 6054746.90508051 6357471.388623846 5964321.251184718 6421137.641789172 6505308.356924115 6692082.717958026 7194571.911518038 6344619.504885893 6919365.58478662 0.8817419031737646 0.8750436482779407 0.9187939718927134 0.8619751591530693 0.9279951410440164 0.9401596544092309 0.9671526436862486 1.0397733467554462 0.9169365929783503 1.0 22.72220833700699 2.605080070521327 1.451495733183755 0.9913741430419966 0.8865777115460417 0.6237263623681135 0.03281776897809514 0.24168812504219772 1.0307162042363271 0.014650843008645827 0.012439568545011761 402.79128978339094 -2.605080070521327 -0.10479643149595486 GADQKPTSADCAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GADQKPTSADCAVR 14 1 M0R3F6;M0R2Z9;Q8IX01-4;Q8IX01-3;Q8IX01 M0R3F6 SUGP2 SURP and G-patch domain-containing protein 2 0 ; 108.63 0.00074261 248445000.0 251980.0 280570.0 270280.0 257330.0 262440.0 291300.0 287120.0 287680.0 338860.0 299520.0 False True 250623.36767761016 289908.6028418537 308333.07468412555 289907.95161536045 295860.1783962503 271163.1166464419 273230.9086950865 309148.1424094408 255352.49349136758 280404.377168027 0.8937926369367226 1.0338947122360058 1.0996015033651305 1.0338923897812002 1.0551196860203138 0.9670430946374015 0.9744174162137208 1.102508261574639 0.9106580149365945 1.0 18.09714934471729 4.740519291687322 24.305603851137295 1.0266164339824082 0.8937925745594942 0.29894785368653365 0.056950196294945694 138.60141853971732 1719736.4533370275 0.013198021966508206 0.08607574915719166 55019.83601926111 -4.740519291687322 -0.13282385942291397 GADS(ph)GEEKEEGINR ddPTM_BT-474_Trastuzumab_2h_R1 8 GADSGEEKEEGINR 14 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR 260.31 1.1307e-24 32042020000.0 14270630.0 10613190.0 9740240.0 8671580.0 9109100.0 12924850.0 12382470.0 11887750.0 16586450.0 12337170.0 True False 14193798.513696048 10966443.613341166 11111581.128316216 9769401.13888287 10269089.891134316 12031385.541324282 11783482.620471036 12774874.269771358 12498941.64454314 11549801.248217354 1.2289214514307578 0.9494919763258934 0.9620582111775495 0.845850151784276 0.8891139916991465 1.0416963273009792 1.0202325016016833 1.1060687534985147 1.0821780718064113 1.0 23.461364689820115 2.545358962206321 8.698016377432806 1.0602604907224749 0.965543843133965 0.12075865669026598 0.0988028106591146 0.7105260957509162 85.62542397867745 0.032895217476380245 0.03093868713259541 351.04190461067077 -2.545358962206321 -0.09471664758850984 GADS(ph)GEEKEEGINREDK ddPTM_BT-474_Trastuzumab_2h_R1 5 GADSGEEKEEGINREDK 17 2 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK 244.95 7.911600000000001e-21 8319850000.0 7255970.0 4669930.0 4085900.0 3778930.0 4167920.0 6760730.0 6167130.0 5968800.0 11005670.0 6374200.0 True False 7216904.663734045 4825365.797017705 4661159.204720545 4257342.150537582 4698679.906802698 6293376.648146569 5868802.361175564 6414222.16495227 8293470.096922436 5967393.09877283 1.2093898532037668 0.8086220761977322 0.7811047684589595 0.7134341713491419 0.7873923887750854 1.0546274636140152 0.9834784241685802 1.0748784366612831 1.3897978496888288 1.0 22.508669386098052 2.0771323720681614 1.3182108908701893 1.1723860287307362 0.854122576084393 0.3561316559758655 0.16299501937272118 0.4686123993164568 1.5280080182029154 0.11183117573663894 0.05579285705805241 119.43520850593376 -2.0771323720681614 -0.31826345264634315 GADS(ph)GEEKEEGINREDKTDK ddPTM_BT-474_Trastuzumab_2h_R1 3 GADSGEEKEEGINREDKTDK 20 3 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK 206.33 4.2894e-21 3499500000.0 1539350.0 982510.0 907350.0 889730.0 915090.0 1382000.0 1610170.0 1443990.0 3199990.0 1555210.0 True False 1531062.3106378634 1015212.2514101639 1035096.9931724186 1002369.7267739286 1031621.2873366291 1286465.5928780704 1532279.92565327 1551747.8662326469 2411395.342169158 1455955.1663177297 1.0515861656029477 0.6972826326635778 0.710940156069704 0.6884619457816352 0.708552921959618 0.8835887413564272 1.0524224654036387 1.0657937154460513 1.6562291188318947 1.0 20.473534500185686 1.9415995927142562 1.4579560136737626 1.292254413054475 0.7641904194973305 0.5458080892029507 0.18913297240280444 0.28804069916972924 1.1390465286525144 0.12768537413862507 0.058006362035509136 87.417743658773 -1.9415995927142562 -0.5280639935571446 GADSGEEKEEGINR ddPTM_BT-474_Trastuzumab_2h_R1 1 GADSGEEKEEGINR 14 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 0 150.12 6.6573e-06 588140000.0 494810.0 442740.0 385780.0 342340.0 435070.0 556920.0 500970.0 407460.0 586240.0 490900.0 False True 492145.99793855916 457476.3332580184 440094.470740129 385680.20889908925 490473.5856380765 518421.43124866526 476736.1672087536 437866.734239956 441769.00721353735 459570.34171936556 1.0708828513548547 0.995443551789019 0.9576215669044862 0.8392191007282255 1.0672437733973308 1.1280567612547043 1.0373519000925222 0.9527741337741443 0.9612652669464503 1.0 18.809926171387296 4.736164035757102 6.277636262595103 0.9924448719891796 1.0725996535575117 0.0924699541642906 0.07300504457797223 0.3340792291739324 72.97786142712046 0.01886882354998495 0.11493426703576931 54470.83537636085 -4.736164035757102 0.08015478156833211 GADSGEEKEEGINREDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GADSGEEKEEGINREDK 17 2 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 0 97.284 0.0011882 268140000.0 77657.0 55447.0 52947.0 53903.0 49573.0 83201.0 88491.0 70685.0 111550.0 70264.0 False True 77238.90334050376 57292.51987658068 60401.47737642595 60727.11427320089 55885.827707808785 77449.51070408727 84210.3522615523 75959.87363115726 84059.99719341923 65779.69136396305 1.1742059249432502 0.8709758086211999 0.9182389902412416 0.9231894071559876 0.8495909079078691 1.17740763293574 1.2801877071087377 1.1547617821869465 1.277901970203997 1.0 16.005354618663407 2.702935959617013 11.032416216054655 1.1933262246550078 0.9400788785115026 0.518514174592564 0.11061355118811264 0.6652114872203181 204.58667269320748 0.0337473021319328 0.031911238763247474 504.58688648669965 -2.702935959617013 -0.2532473461435052 GADSLEDFLYHEGYACTSIHGDR ddPTM_BT-474_Trastuzumab_2h_R1 5 GADSLEDFLYHEGYACTSIHGDR 23 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;;;; 323.03 4.572899999999998e-74 2500339000.0 684692.0 1131467.0 1123653.0 1219093.0 1194030.0 1150242.0 1233495.0 897705.0 1106808.0 1145836.0 False True 681005.6943484332 1169127.1951087546 1281853.575433039 1373430.0488035774 1346082.6429297193 1070728.4779184232 1173826.1344415054 964696.3055536242 834049.9988673581 1072707.765480446 0.6348473612880237 1.0898841536633457 1.1949699784814372 1.2803394298058834 1.2548456217493995 0.998154867872019 1.0942646004951502 0.8993095198873242 0.7775183751874888 1.0 20.032825669915116 1.700362805784902 4.069732572262042 0.8729526493186657 1.095548993127384 0.1808279278561542 0.17792793751219285 0.2815372766780668 10.848538042808151 0.10119664023922859 0.048453698483831256 50.16060959603633 -1.700362805784902 0.2225963438087184 GADTVIY(ph)ERLHRMNPT(ph)KQETQDALDIFANET(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 1 GADTVIYERLHRMNPTKQETQDALDIFANETLR 33 3 O43520;A0A2R8Y5C5 O43520 ATP8B1 Phospholipid-transporting ATPase IC 3 GADT(0.557)VIY(0.584)ERLHRMNPT(0.609)KQET(0.25)QDALDIFANET(1)LR 41.483 0.069125 2604600000.0 248380.0 241610.0 228430.0 257610.0 250910.0 297460.0 310220.0 239930.0 266920.0 285140.0 True False 247042.74967761236 249651.842793671 260590.9584508469 290223.39958665153 282861.901239915 276897.29034552193 295213.4734445169 257834.7949398534 201141.1425447554 266942.1210793641 0.9254543594645541 0.9352283625537218 0.9762077164786259 1.087214705619147 1.0596375727299245 1.0372933624184326 1.1059081730932507 0.9658827685091967 0.7535009526838758 1.0 18.02616744225371 1.4517590364046615 8.767932114419345 0.870634828194273 1.0188915146117397 0.33523702469853633 0.07890318872966859 0.168287495165263 38.68602474308169 0.04543445674044471 0.019774284318766 28.29821464315357 -1.4517590364046615 0.1482566864174667 GAEDDELEEEADWIYR ddPTM_BT-474_Trastuzumab_2h_R1 4 GAEDDELEEEADWIYR 16 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ;;; 336.34 2.1840999999999996e-71 736290000.0 431117.0 535182.0 477473.0 516901.0 506877.0 470967.0 517704.0 445919.0 556747.0 516226.0 False True 428795.91397360177 552995.2093456486 544697.0481302855 582340.6136009459 571424.7814546425 438410.1598270668 492660.6796986663 479195.740110801 419544.1618775848 483280.01471668563 0.887261837684258 1.1442542470328145 1.127083743468276 1.204975574962132 1.1823886029916428 0.907155575394685 1.0194104136242421 0.9915488443934952 0.8681181698016939 1.0 18.8824998100564 2.7369040428471405 24.999832251140027 0.9648159288955149 1.1174558665487686 0.4067033183948029 0.09126029202989212 155.06849836860223 2340162.2923666434 0.029063041749140407 0.02874229623172192 545.6372894800355 -2.7369040428471405 0.15263993765325368 GAEDDRGPWR ddPTM_BT-474_Trastuzumab_2h_R1 4 GAEDDRGPWR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;; 98.943 0.00459 2140550000.0 2629950.0 3525400.0 3080200.0 3678810.0 3306310.0 2948620.0 3001960.0 2547300.0 2770690.0 2977600.0 False True 2615790.641414915 3642740.8078506957 3513865.386421654 4144546.9688031077 3727348.9804652813 2744788.839704879 2856743.726199152 2737392.4609273095 2087890.5748438786 2787567.018748389 0.93837766906476 1.3067814274421563 1.260549203943219 1.486797246820634 1.3371334053661075 0.9846539370153987 1.0248161593911465 0.9820005913817965 0.7490010323702769 1.0 21.4105750600804 2.6952987744170787 6.364585193895839 0.954599924096416 1.280128774135098 0.5395835382313994 0.14649089052852393 0.17188251350756298 18.927717287275133 0.04847637815600236 0.046118174630662354 495.79115477724525 -2.6952987744170787 0.3255288500386819 GAEEEPPPPLQAVLVADSFDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAEEEPPPPLQAVLVADSFDRR 22 1 Q13144;A0A3B3IUB1;A0A3B3IRP4;A0A3B3ISX3;A0A3B3ISM8;A0A3B3IUF2;A0A3B3ITQ2;A0A3B3IS56;A0A3B3ISS1;C9JRD9;A0A3B3IT53;H7C2X0 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 0 ; 221.86 1.4432999999999993e-25 348990000.0 332800.0 451570.0 417990.0 438180.0 422810.0 408960.0 394620.0 361420.0 452880.0 424820.0 False True 331008.24177755625 466600.23447017034 476839.35876579 493653.5430723928 476652.3473087892 380689.55778828927 375530.72300520696 388390.9956535738 341273.7922810904 397707.6238932994 0.8322904110743479 1.173224264353942 1.1989696201894304 1.2412473722274802 1.198499396724338 0.9572096055428501 0.9442381801208763 0.9765741774107274 0.8581022132295116 1.0 18.60134869272183 2.7244594598501055 21.955761725213716 0.9481201985721016 1.1414518992553142 0.3955186214413223 0.11172028686992046 158.36083299734034 246569.19798112704 0.036392848815799426 0.034532835585549766 530.2240954136196 -2.7244594598501055 0.1933317006832126 GAEEMETVIPVDVMR ddPTM_BT-474_Trastuzumab_2h_R1 5 GAEEMETVIPVDVMR 15 0 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 ;;;; 236.11 2.4801999999999998e-17 364290000.0 440275.0 557817.0 463600.0 518182.0 505854.0 492680.0 475955.0 435388.0 567757.0 480705.0 False True 437904.60831915145 576383.6016375029 528870.8503165633 583783.7880696031 570271.5084684379 458622.1912439709 452931.23832533316 467878.86341546656 427840.8949040259 450025.9953477439 0.9730651403387797 1.2807784607911816 1.175200667925626 1.2972223696066756 1.2671968161034297 1.0191015540993016 1.0064557225751911 1.0396707484729353 0.9507026245748867 1.0 18.779648814270416 2.724316239372189 22.50154160103118 1.0087028404942482 1.207421758790315 0.5508136513371085 0.0880293123663368 156.1186126176342 246616.12197232092 0.027571731116225857 0.026149472213707402 530.049268351762 -2.724316239372189 0.19871891829606692 GAEETSWS(ph)GEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GAEETSWSGEER 12 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 GAEETS(0.001)WS(0.999)GEER;GAEETS(0.001)WS(0.999)GEER 187.74 1.0587e-05 2603300000.0 1708240.0 1819990.0 1777730.0 1938820.0 1879870.0 2089680.0 1967220.0 1743330.0 2048390.0 1928470.0 True False 1699043.0256433068 1880567.2669428121 2028018.9316938396 2184274.413208308 2119260.3016375564 1945225.3401776042 1872058.0530898157 1873426.137050368 1543591.7315197468 1805393.3935537662 0.9410929671670518 1.0416385003165833 1.1233113729866118 1.2098606436732031 1.17384959378076 1.0774523420342148 1.0369252816444763 1.0376830577421605 0.8549891325797506 1.0 20.783881802608736 1.584921966163698 1.984480312285722 0.9322967149793098 1.097937069330845 0.3712098551545048 0.07921848645298146 0.32596140510749677 2.6857711748860447 0.0662139793250693 0.023602653396132482 38.45226849755583 -1.584921966163698 0.16564035435153524 GAEFLLR ddPTM_BT-474_Trastuzumab_2h_R1 6 GAEFLLR 7 0 Q9BXT2 Q9BXT2 CACNG6 Voltage-dependent calcium channel gamma-6 subunit 0 ;;;;; 159.14 0.0032442 1044225000.0 1405760.0 1659770.0 1447180.0 1482620.0 1408550.0 1542170.0 1542490.0 1406440.0 1653670.0 1482590.0 False True 1398191.5443546183 1715014.4410978465 1650930.3648859435 1670319.539983545 1587920.4933700624 1435563.417777697 1467873.8658159778 1511395.6945576093 1246145.1865427285 1387969.8368908407 1.0073645025937128 1.2356280342083017 1.1894569471222478 1.2034263970211265 1.1440597995466002 1.0342900685748833 1.0575689952341676 1.0889254610483843 0.8978186365592711 1.0 20.404544785193632 2.7758783101959765 3.623220967082632 1.028961794877635 1.1674265346854935 0.46880582870914234 0.07387271179604463 0.22205936591460715 6.170093258334141 0.02353868125393456 0.02419632793778561 596.8680200578832 -2.7758783101959765 0.13846473980785845 GAEILEVLHSLPAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAEILEVLHSLPAVR 15 0 Q15008;Q15008-4;Q15008-3;Q15008-2;H7C531 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 193.06 1.0839e-07 1367780000.0 605920.0 726560.0 660180.0 733330.0 610940.0 660330.0 671240.0 578740.0 677370.0 652860.0 False True 602657.7940440405 750743.1103852043 753127.6056125717 826169.5028099812 688739.587674917 614682.9413496226 638769.5568141878 621928.5175821729 510441.23979297525 611193.9158584329 0.9860336930834738 1.2283222900391149 1.2322236626894272 1.3517305741658296 1.126875726024808 1.005708540940381 1.0451176627257888 1.017563332103303 0.8351543209916469 1.0 19.221270656546476 2.838344199088866 3.3560319729200403 0.988580606907173 1.2068094101038185 0.51687581005492 0.09998819561117334 0.20979146481463073 4.472501941569683 0.03253378444688909 0.034519068796286786 689.1983024710438 -2.838344199088866 0.2182288031966455 GAEQDNPNQYSWGENYAGSSGLMSAS(ph)PELGPAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAEQDNPNQYSWGENYAGSSGLMSASPELGPAQR 34 0 H0YA26;E9PHT6;Q9NVE7;H0YA31 H0YA26 PANK4 Pantothenate kinase 4 1 GAEQDNPNQYSWGENYAGSSGLMSAS(1)PELGPAQR;GAEQDNPNQYSWGENYAGSSGLMS(0.001)AS(0.999)PELGPAQR 287.2 7.656699999999995e-75 376260000.0 168903.0 185858.0 173690.0 184199.0 196916.0 199004.0 178140.0 164010.0 178912.0 194031.0 True False 167993.64501488733 192044.17117646642 198144.04225945592 207518.57451365094 221992.08538742617 185247.3218850273 169522.68763911506 176249.25902590505 134821.53489797405 181647.77546170325 0.9248318323078246 1.0572338179663259 1.0908145819888149 1.1424228784866237 1.222101866225324 1.0198160776490377 0.9332494560323172 0.970280305266186 0.7422140709143914 1.0 17.470784172422412 2.3367941551835427 3.2650035203566774 0.9138986424743659 1.0913008402152593 0.4322605661163441 0.09468512354180773 0.24219286726387654 5.148988989829826 0.03671533898307844 0.029207037835950748 217.16716163880713 -2.3367941551835427 0.17740219774089339 GAES(ph)ENEEESPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAESENEEESPR 12 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 GAES(1)ENEEESPR;GAES(1)ENEEESPR 180.85 1.9835e-05 438100000.0 251680.0 287450.0 256050.0 263540.0 261730.0 280600.0 272890.0 233870.0 274740.0 259760.0 True False 250324.98284427673 297017.5994828054 292099.6143735026 296904.1369786351 295059.7641047507 261202.782461351 259689.26815896507 251322.56696779706 207034.00832738646 243181.89440827532 1.0293734385669724 1.221380400072655 1.2011569162427032 1.2209138254354006 1.213329490761258 1.074104563158064 1.0678807679776345 1.0334756523684878 0.8513545337376122 1.0 17.891676294419973 1.9737779502577197 1.1752639226538546 0.9407189685167536 1.1800428001124892 0.6365925711655251 0.06994227721713343 0.2939917145808173 0.749549819392577 0.05257894850494017 0.02397802048261732 94.14081423645773 -1.9737779502577197 0.23932383159573556 GAFCEVRPDDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAFCEVRPDDKR 12 2 O60502;O60502-2;O60502-4 O60502 MGEA5 Protein O-GlcNAcase 0 ; 121.08 0.00021524 1291770000.0 810930.0 839210.0 752320.0 734290.0 709970.0 791750.0 893270.0 779280.0 973350.0 858510.0 False True 806564.0429827935 867142.5975368432 858240.1167173355 827251.0387115508 800380.4711781208 737018.1860790257 850059.1174772199 837433.8307036605 733480.93472178 803719.15679261 1.003539652086354 1.0789124412529074 1.0678358347738053 1.0292787371310759 0.9958459549131405 0.9170096044745695 1.0576569070090829 1.0419483268827325 0.912608500771428 1.0 19.61633194364736 3.398910661711488 3.622686108639637 0.9948310491549428 1.0526086616861297 0.25993944085774223 0.04729884328357163 0.35829281995026263 9.321547377525995 0.014035671758342834 0.019831091702037257 2505.593776796181 -3.398910661711488 0.05777761253118685 GAFFMDEDEEVYKR ddPTM_BT-474_Trastuzumab_2h_R1 3 GAFFMDEDEEVYKR 14 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 ;; 202.13 2.7062e-08 1149740000.0 707109.0 693406.0 609448.0 616946.0 635232.0 755731.0 704592.0 689678.0 1020980.0 741883.0 False True 703302.0037111951 716485.5995372223 695252.9809830221 695051.3003431015 716125.0298849533 703489.0947694194 670508.1931571747 741145.2744739234 769373.1594310811 694535.3917820088 1.0126222681132107 1.0316041601550276 1.0010331931381815 1.0007428110463443 1.0310850078461096 1.0128916439584708 0.9654053646378105 1.0671094421442295 1.1077522737279908 1.0 19.40568868663835 1.6246734296399354 9.491649011700728 1.0659518606127587 1.009510488816081 0.3582687639008967 0.030295200810588837 0.09263558638117539 21.050471805569718 0.014206468110116489 0.007328790784576149 42.13795253862732 -1.6246734296399354 -0.05644137179667763 GAFGKPQGTVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAFGKPQGTVAR 12 1 P27635;X1WI28;A0A087WV22;H7C123;H7C2C5;Q96L21;F8W7C6 P27635;F8W7C6 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 ; 117.21 0.00069155 4134900000.0 4456200.0 4677400.0 4178300.0 4457600.0 4273000.0 4762900.0 4971000.0 4582700.0 5782300.0 4694500.0 False True 4432208.314330361 4833084.43145199 4766568.321565348 5021931.702951979 4817141.221944747 4433651.933660613 4730533.738935898 4924684.344479088 4357329.643850359 4394892.990836347 1.0084906102541789 1.0997046894041111 1.0845698249090407 1.142674398085016 1.0960770221229084 1.0088190868139637 1.0763706303656049 1.1205470428398123 0.9914529552677823 1.0 22.06739660762364 1.2242602451563869 24.992403161412497 0.9957263794660117 1.0824681692745133 0.40402768030983527 0.040659665047853635 260.14456198796927 454635.27677774196 0.038701154710975155 0.009862406905038793 16.759468639132844 -1.2242602451563869 0.08674178980850156 GAGATS(ph)GSPPAGRN ddPTM_BT-474_Trastuzumab_2h_R1 3 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 GAGAT(0.008)S(0.724)GS(0.268)PPAGRN;GAGAT(0.007)S(0.746)GS(0.246)PPAGRN;GAGAT(0.076)S(0.547)GS(0.377)PPAGRN 119.88 0.00017129 514335000.0 543318.0 648218.0 584257.0 666265.0 641703.0 648561.0 669937.0 530641.0 682951.0 661388.0 True False 540392.8362563045 669793.544273945 666515.3071471191 750614.08068631 723420.0733783309 603727.504618375 637529.5879021316 570240.1259603996 514646.87712454295 619177.6515972454 0.8727589486834584 1.0817469631633663 1.0764524614668511 1.212275796372831 1.1683562407528427 0.9750473116414735 1.029639209776944 0.9209636757550836 0.8311780565673642 1.0 19.239993874679335 2.0387865649982593 1.6274437379449598 0.9085063965449466 1.0828447784122601 0.3200924321499361 0.09599541569885743 0.43110978840868 2.144410631208154 0.06192362356741803 0.03130316969457464 109.34188710382834 -2.0387865649982593 0.17433838186731354 GAGATSGS(ph)PPAGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GAGATSGSPPAGR 13 0 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 GAGAT(0.026)S(0.442)GS(0.532)PPAGR;GAGAT(0.342)S(0.137)GS(0.522)PPAGR;GAGAT(0.029)S(0.071)GS(0.9)PPAGR 109.95 0.0011503 494884000.0 394309.0 463566.0 420774.0 430761.0 402746.0 447341.0 412959.0 373269.0 403819.0 398010.0 True False 392186.0841558483 478995.5140784351 480015.32176682755 485295.2984330801 454033.3158374342 416417.3695974455 392982.5955134237 401124.22820157575 304303.2183473717 372608.6610464954 1.0525415138079948 1.2855190019822549 1.2882559423569855 1.3024262427773337 1.2185259316362973 1.117572974358434 1.0546791757596474 1.076529533894871 0.8166831589279661 1.0 18.507301683616 2.079431602275674 1.0525369429338567 0.9400777002722387 1.241007273612861 0.6392196679068607 0.08823447554575223 0.32890687995282253 0.6766730846279001 0.06693787780892399 0.033194073984201086 120.06919592488799 -2.079431602275674 0.3009295733406223 GAGDGS(ph)DEEVDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGDGSDEEVDGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK 259.72 5.7864e-24 4024600000.0 5104200.0 3757300.0 3313200.0 2823900.0 3095200.0 4395400.0 4178400.0 4105800.0 4931200.0 4006300.0 True False 5076719.554329935 3882359.459164187 3779669.761149349 3181405.4504590095 3489355.3733122777 4091556.3436586703 3976274.828961921 4412195.644829956 3715971.834694653 3750614.504034005 1.3535700746823291 1.0351262319783818 1.0077467991136102 0.8482357883054156 0.9303423131220956 1.0909029278423474 1.0601662273436006 1.1763927324667416 0.9907634684124182 1.0 21.83869555674405 4.738330154114222 5.64074129924298 1.02365259018246 1.3645883005293076 0.5920165878164056 0.08399898818821237 0.11659006963438695 15.350296084675227 0.023275901324945447 0.15337122492893066 54743.19668779859 -4.738330154114222 0.34093571034684755 GAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_BT-474_Trastuzumab_2h_R1 7 GAGDGSDEEVDGKADGAEAKPAE 23 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE 207.22 9.702e-25 5261150000.0 7155890.0 5259410.0 4652480.0 4271762.0 4384783.0 7266210.0 7063050.0 6479240.0 11291550.0 7135960.0 True False 7117363.483334121 5434466.282469519 5307508.743918902 4812566.63120638 4943159.1244049985 6763914.005518501 6721383.2880288 6962753.789714063 8508898.801518172 6680536.923397279 1.0653879418594248 0.8134774711649837 0.7944733791277145 0.7203862034429154 0.7399344066331774 1.0124805959576706 1.006114233795859 1.0422446383506052 1.2736848698070078 1.0 22.67153262795064 2.5744234372712707 3.8928761112423307 1.071697543920579 0.8189409482995949 0.5307687701675154 0.11374453163879175 0.19448221106231808 5.314722268278597 0.039557399825139165 0.03649294417940169 375.338779340827 -2.5744234372712707 -0.25275659562098407 GAGGEENKENERPSAGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 GAGGEENKENERPSAGSK 18 2 Q9UHB9;Q9UHB9-4;Q9UHB9-2;K7EN53;K7EQC2 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 ;;;; 212.37 1.1221e-16 1703060000.0 1958010.0 1767310.0 1670670.0 1697155.0 1713720.0 2038650.0 1939550.0 1793860.0 2790820.0 1918830.0 False True 1947468.291715361 1826133.8449885456 1905885.814276038 1912014.648986778 1931952.08398576 1897722.9239659056 1845726.5566994771 1927726.94223651 2103059.806072058 1796368.6266069857 1.0841139523761196 1.0165696605589138 1.0609658764058412 1.064377667627288 1.0754764113392845 1.0564217699294602 1.0274765041881853 1.0731243652799907 1.1707284211728617 1.0 20.77665200025405 1.4689096509868012 10.786223092992433 1.0974807312823243 1.0550036492539283 0.06329279186262349 0.043006496035474975 0.17143981404166042 98.20505806174829 0.021331510265710937 0.009808052912390616 29.438091509545867 -1.4689096509868012 -0.04247708202839595 GAGGS(ph)PVGVEEGLVNVGTGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGGSPVGVEEGLVNVGTGQK 21 0 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 GAGGS(1)PVGVEEGLVNVGTGQK;GAGGS(1)PVGVEEGLVNVGTGQK 342.34 9.006399999999996e-81 623000000.0 523270.0 577370.0 511230.0 450810.0 542920.0 642520.0 638250.0 596810.0 761480.0 651660.0 True False 520452.7724607621 596587.4114224643 583206.7403091814 507882.4997774094 612057.6438610436 598104.1047293912 607375.4091482258 641346.9927397735 573823.4573092323 610070.500885805 0.8531026687982447 0.9778991289633515 0.9559661374585098 0.832498045783198 1.0032572349791595 0.9803852241027242 0.9955823273971353 1.0512670122691654 0.9405854839335077 1.0 19.218616447278123 3.1865370086809324 24.99766029435874 1.0006891654464336 0.91373293782393 0.4556591057983601 0.047741032456507446 91.04287708642558 43746.24202881005 0.013694045591310622 0.016367530946857035 1536.515722919024 -3.1865370086809324 -0.08695622762250366 GAGGSSSS(ph)PPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGGSSSSPPEK 12 0 A0A087WXR4;Q8NG45;Q8NG42;P06401-5;P06401;Q8NG44 A0A087WXR4 PGR;PR Progesterone receptor 1 GAGGSSS(0.003)S(0.997)PPEK;GAGGSSS(0.16)S(0.84)PPEK 218.56 3.568e-11 984590000.0 1670060.0 1400960.0 1277400.0 1148380.0 1245660.0 1761440.0 1722600.0 1647330.0 2178400.0 1897010.0 True False 1661068.582521109 1447590.1067017957 1457246.8166401582 1293764.7902539452 1404287.417394734 1639675.7987837552 1639271.2570289618 1770262.1295722441 1641562.5090644953 1775941.1976880303 0.9353173318370755 0.8151115074003062 0.8205490241102817 0.728495285732548 0.7907285552150457 0.9232714466663259 0.9230436566047405 0.996802220634794 0.9243338187106235 1.0 20.76015238343995 2.56579542198445 3.021454260075698 0.9619307792938474 0.8133047602996691 0.6191541103072481 0.05349073633207391 0.1769425052521217 3.134118250262507 0.019542264628947512 0.017714715284469915 367.95560427483565 -2.56579542198445 -0.14862601899417827 GAGHPCYLDKPEEWHTGLLDFLQGLQ ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGHPCYLDKPEEWHTGLLDFLQGLQ 26 1 F8W9U3;Q96IU4;Q96IU4-2 F8W9U3 ABHD14B Alpha/beta hydrolase domain-containing protein 14B 0 ; 94.955 0.0047597 754520000.0 671760.0 683650.0 604980.0 626680.0 593840.0 731400.0 693470.0 501750.0 868780.0 679530.0 False True 668143.3187995523 706404.8769748483 690155.9254195733 706017.6237450514 669462.0040345585 680840.039530407 659924.2067873414 539193.1328348747 654680.8100555695 636161.8136250973 1.0502725949428053 1.110416975438181 1.084874808009611 1.109808241588549 1.052345472010814 1.0702309144441033 1.0373527499659823 0.8475723020253961 1.029110512504584 1.0 19.27903424941526 1.959826504041198 8.650115861199694 0.9418179876178391 1.0792096325670602 0.5465754462964306 0.04844737826292434 0.22634797579090957 46.0035567451896 0.019394018628095224 0.012390372010580396 91.1646573632571 -1.959826504041198 0.13739164494922107 GAGQQQS(ph)QEMMEVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGQQQSQEMMEVDR 15 0 Q15435;B5MBZ8;Q15435-3;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 1 GAGQQQS(1)QEMMEVDR;GAGQQQS(1)QEMMEVDR 256.89 9.505699999999999e-25 195840000.0 182730.0 194912.0 178736.0 208010.0 193536.0 195247.0 177471.0 168308.0 203110.0 199849.0 True False 181746.20198321177 201399.52809320795 203900.47519883764 234344.04467225398 218181.6624222555 181750.03445200075 168886.04972494312 180867.99761070657 153056.262034562 187094.46572066305 0.971414099733787 1.076459035372552 1.0898263313852714 1.2525439690029945 1.1661577566276409 0.9714345838714349 0.9026779550876424 0.9667201908620175 0.8180694252232935 1.0 17.513407358534263 2.5965686319581542 4.581771389693112 0.9249653123463305 1.1152868926902748 0.5622774215199786 0.07993588206528819 0.17799681652670643 5.8956252425494435 0.02776228466604133 0.025919915354220436 394.9741125410999 -2.5965686319581542 0.1903215803439443 GAGTDDHTLIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GAGTDDHTLIR 11 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ;;; 208.15 2.0557e-08 12329900000.0 8675100.0 9632100.0 8155500.0 8294700.0 7228400.0 8258300.0 7437600.0 7340000.0 8854600.0 8260400.0 False True 8628394.225494215 9952698.62577259 9303723.51112324 9344808.16952525 8148893.89391655 7687423.158947169 7077814.873608854 7887748.071764793 6672502.4755611755 7733214.199915765 1.1157578210607695 1.2870067178381017 1.2030862291677609 1.2083989823567851 1.0537525126363774 0.9940786534829082 0.9152487815074293 1.0199831361002145 0.8628368881381634 1.0 22.882636743690476 3.0510755481337517 2.0652674310453705 0.95897053812307 1.2138426097013277 0.8012017882316421 0.057478468087447165 0.1264161489733544 1.0945603318271182 0.017878025758715724 0.02169940176539283 1124.8006227738272 -3.0510755481337517 0.25487207157825775 GAGTNEDALIEILTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAGTNEDALIEILTTR 16 0 P12429;D6RA82;D6RFG5;D6RCA8 P12429 ANXA3 Annexin A3;Annexin 0 135.37 5.405600000000001e-05 25444000.0 39799.0 48193.0 38153.0 41514.0 39687.0 41642.0 42395.0 35695.0 47554.0 39165.0 False True 39584.72660608458 49797.07487171629 43524.61076817909 46769.66814347368 44740.90420672152 38763.38655472407 40344.19188537257 38358.742155537344 35834.953890953424 36665.45616915654 1.0796190949721163 1.3581468792308724 1.1870740286818675 1.2755785153115573 1.2202467630651805 1.0572181722187965 1.1003324682296094 1.0461820515356146 0.9773491900831239 1.0 15.162133868167883 2.7309518090394014 3.733568309836601 1.042338620509844 1.234400737899826 0.6257509400776864 0.07253641338109888 0.1454939706233686 4.547295030472013 0.022397662457974827 0.022254419249708977 538.2100573762533 -2.7309518090394014 0.19206211738998213 GAGVHSGERPPHSLSSNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGVHSGERPPHSLSSNAR 19 1 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 0 ; 69.422 0.014801 136550000.0 39329.0 62871.0 57681.0 62057.0 58583.0 46116.0 50603.0 46812.0 43710.0 55760.0 False True 39117.25703386267 64963.623228677905 65801.9834277604 69913.40983715249 66043.19780135479 42928.109465387235 48155.139567767634 50305.349146519526 32938.25618399238 52201.34906146221 0.7493533737567922 1.2444816924595052 1.2605418176125047 1.3393027401425197 1.2651626632023456 0.822356322915015 0.9224884113831896 0.9636791012295425 0.6309847690949646 1.0 15.671799471002307 2.7364317053822176 24.980053088142146 0.8784142255871988 1.190047399115458 0.4179136844647834 0.17844405865193846 185.7803622167727 2179884.269548716 0.05654743312600574 0.05576390492902269 545.0441784801264 -2.7364317053822176 0.31163317352825926 GAGWTGHVAGTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GAGWTGHVAGTR 12 0 Q15274 Q15274 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] 0 ;; 119.45 0.00022686 199160000.0 212987.0 247902.0 277394.0 235275.0 218184.0 243577.0 264825.0 211719.0 277761.0 254215.0 False True 211840.30165708004 256153.26821007673 316448.6640481291 265060.790876711 245968.4391221141 226739.09530858323 252014.4030202572 227518.54686729805 209310.52335671274 237990.78105558845 0.8901197799237428 1.0763159273394123 1.3296677402567747 1.1137439429420575 1.0335208701410257 0.9527221781570727 1.0589250638300698 0.9559973115687856 0.8794900475906386 1.0 17.86054616400792 3.059341553750462 3.3469481463403583 0.9740265246356716 1.1163052802571645 0.24845083088810627 0.107709971466315 0.3446969297619815 7.888470739838625 0.034384514087834016 0.041084965189265354 1146.4141919799972 -3.059341553750462 0.14227875562149284 GAGYTFGQDISETFNHANGLTLVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAGYTFGQDISETFNHANGLTLVSR 25 0 P67775;P62714;H0YC23 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 0 ; 340.99 2.1782999999999996e-88 1075210000.0 414100.0 608530.0 554090.0 589120.0 570260.0 538630.0 545500.0 518560.0 595420.0 571880.0 False True 411870.5316108356 628784.5531858474 632101.0557633837 663702.5315961658 642879.2308041685 501395.7758986371 519112.08098763454 557257.5803943252 448686.7192192348 535382.1287888995 0.7693019797701085 1.1744593615932524 1.1806540072476353 1.2396800264841543 1.2007857495326575 0.9365194483290957 0.969610401755341 1.0408595102995137 0.8380681668142707 1.0 19.03020945663937 2.728912518474981 24.699989644943297 0.967318713939017 1.1271909323332676 0.25258891530509864 0.132432238134025 825.1335567460969 2112411.572314448 0.042867452831115614 0.04091726550078458 535.6887409034397 -2.728912518474981 0.1598722183942506 GAHNGQGLGNAFLSHISACDGIFHLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAHNGQGLGNAFLSHISACDGIFHLTR 27 0 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 412.57 5.3103999999999964e-166 2332200000.0 82708.0 188008.0 219435.0 199738.0 231800.0 180445.0 200113.0 140750.0 176954.0 189064.0 False True 82262.70931772274 194265.73262676387 250329.54063678815 225024.81032040156 261318.35601375907 167971.2618718406 190432.7696841036 151253.47971401818 133346.05776211843 176997.77365416617 0.4647669155345132 1.097560317376293 1.4143089795349857 1.2713426032130486 1.4763934631423437 0.9490021168290943 1.0759048871212804 0.8545501821370394 0.7533770341239528 1.0 17.433371688088055 2.013490597370962 1.8319392881202232 0.8555539602970267 1.1551256825581815 0.13202780174148654 0.27094900491849283 0.6470782562767426 4.062735026286098 0.16797963643160588 0.0859187652564588 103.15507457594907 -2.013490597370962 0.2995717222611548 GAHSVGLMWWMLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAHSVGLMWWMLAR 14 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 168.31 3.5104000000000007e-06 96186000.0 89328.0 92259.0 88825.0 90485.0 78976.0 95613.0 100230.0 91975.0 126080.0 106970.0 False True 88847.06797327388 95329.78504325682 101330.78791925957 101940.391722364 89033.12547257397 89003.49835879247 95381.4919842174 98838.6415395866 95009.27338544413 100143.08301837553 0.8872012454117384 0.9519357919684228 1.0118600792494685 1.0179474073477315 0.8890591620415464 0.888763314211736 0.952452122596581 0.9869742228871706 0.9487352548154586 1.0 16.6117032506577 1.89898525885987 6.360821222478481 0.9759071223961945 0.9439949226759922 0.11546292235511368 0.04569638555016545 0.6856282229996008 36.358197992385136 0.021852758126696376 0.013359300607897593 79.24744312786879 -1.89898525885987 -0.03191219972020232 GAHVTINAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAHVTINAR 9 0 Q9UJU6-2;Q9UJU6-3;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ; 99.802 0.005090399999999999 477740000.0 227167.0 292950.0 301800.0 281990.0 232578.0 258870.0 267110.0 212702.0 359950.0 276610.0 False True 225943.95811262628 302700.6636579853 344290.81670737424 317689.90508691425 262195.4297021919 240974.9262144333 254188.86884070918 228574.90331887093 271245.145582889 258956.51298226477 0.8725169933381848 1.1689246977106014 1.329531405649387 1.2268079355419494 1.0125075700264352 0.9305613650695745 0.9815890162921598 0.8826767888032436 1.0474544256836893 1.0 17.982350318401043 3.0919373696866597 5.072493818740338 0.9572151184949513 1.1626521287322857 0.35173283316021386 0.11546880395671476 0.21328581608298483 9.146341152122902 0.03494012216981031 0.04204322960783521 1235.7692083070247 -3.0919373696866597 0.2054370102373344 GAILSEEELAAMS(ph)PTAAAVAK ddPTM_BT-474_Trastuzumab_2h_R1 6 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 GAILSEEELAAMS(0.986)PT(0.014)AAAVAK;GAILSEEELAAMS(0.998)PT(0.002)AAAVAK;GAILSEEELAAMS(0.999)PT(0.001)AAAVAK;GAILSEEELAAMS(0.999)PT(0.001)AAAVAK;GAILSEEELAAMS(0.999)PT(0.001)AAAVAK;GAILSEEELAAMS(0.998)PT(0.002)AAAVAK 343.29 5.993999999999999e-81 623363000.0 1133227.0 1092510.0 1013578.0 963632.0 962951.0 1196405.0 1175654.0 1120839.0 1491238.0 1215571.0 True False 1127125.8317453545 1128873.5349137576 1156280.9722220907 1085627.712396586 1085577.1019922567 1113700.3383844364 1118783.124585584 1204481.6976851171 1123742.3764654421 1137992.2180773073 0.9904512648159298 0.9919870426012611 1.0160710713608245 0.9539851812262885 0.9539407078076435 0.9786537383059498 0.9831201890605386 1.0584270072779118 0.9874780851876641 1.0 20.118059261432936 1.9097221214894278 13.04191755112549 1.0215796117429923 0.9805439012676432 0.2834533776164281 0.02427814026859736 1.237176030334355 176.25215854548705 0.010271912319391634 0.006590723722327932 81.23106019160801 -1.9097221214894278 -0.04103571047534904 GAKEEHGGLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAKEEHGGLIR 11 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ; 142.1 2.2722e-05 1689300000.0 2306500.0 2888300.0 2700200.0 2896700.0 2707900.0 2727900.0 3154800.0 2653900.0 3880400.0 3081100.0 False True 2294082.060276239 2984435.3194857826 3080364.689440861 3263421.922994654 3052735.014019229 2539326.693785887 3002190.271493652 2851947.4942311365 2924127.4146960448 2884461.5601375788 0.7953241922096613 1.0346594181492352 1.067916706539136 1.131379931732909 1.058337908262374 0.880346865730036 1.0408147964192174 0.988727856056126 1.0137515628936216 1.0 21.459870606733052 4.740190220753426 24.65265085599251 1.0240831911649608 0.7953241017372744 0.5558982592832831 0.06131560293586985 93.39675685320854 1412752.6479928866 0.015436949684582741 0.0986257513608854 54978.162519041594 -4.740190220753426 -0.2287590894276864 GAKEEHGGLIRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 7 GAKEEHGGLIRSPR 14 2 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR 164.02 2.1852000000000003e-06 35605600000.0 10351370.0 15748120.0 15258280.0 19452300.0 17142300.0 16717080.0 19470100.0 15347780.0 26066400.0 19549400.0 True False 10295639.374065325 16272286.654260427 17406513.196652744 21914959.185510755 19325270.2946275 15561467.607373474 18528256.879995134 16493109.27804769 19642684.991865 18301740.554916624 0.5625497390902243 0.8891114266117711 0.9510851246318546 1.1974248634851 1.0559252676891386 0.8502725497981668 1.01237676407874 0.9011770890619986 1.0732686835399459 1.0 24.125477524225577 4.749746008916133 2.067809866548208 0.9999963340711142 0.431568775414255 0.6864315837833757 0.09032332283608072 0.44071286129043513 2.0190357546523736 0.024102482716808357 0.4747536511197712 56201.25438431225 -4.749746008916133 -0.5684275586568592 GALHTVS(ph)HEDIR ddPTM_BT-474_Trastuzumab_2h_R1 5 GALHTVSHEDIR 12 0 Q13136-2;A0A2R8Y7R9;Q13136;H0YDW2;H0YD72 Q13136-2 PPFIA1 Liprin-alpha-1 1 GALHTVS(1)HEDIR;GALHT(0.023)VS(0.977)HEDIR;GALHT(0.003)VS(0.997)HEDIR;GALHTVS(1)HEDIR;GALHT(0.043)VS(0.957)HEDIR 227.42 8.3569e-12 12192510000.0 9183310.0 11162100.0 9785720.0 11015990.0 9988600.0 10547300.0 10081230.0 4729990.0 11150590.0 8302160.0 True False 9133868.079321649 11533623.75086805 11163464.316996982 12410613.204505103 11260589.002929393 9818189.976673583 9593562.390861543 5082965.872202552 8402676.504750952 7772309.04096323 1.1751807643240186 1.4839378735561288 1.4363124598058292 1.5967729974575282 1.44880870582751 1.2632269155701 1.234325904991627 0.6539840149707448 1.0811042716476442 1.0 22.889911835533205 2.049694059503186 2.6941931981380183 0.8818725040738646 1.4223674297107436 0.6582587102739097 0.1546558396863882 0.14572770390918732 2.057436098164656 0.07363939295054223 0.04410179164110358 112.12283222216563 -2.049694059503186 0.540494925636879 GALKEEVASR ddPTM_BT-474_Trastuzumab_2h_R1 2 GALKEEVASR 10 1 Q9P2M7;Q9P2M7-2 Q9P2M7 CGN Cingulin 0 ; 85.958 0.008342700000000002 85661000.0 183520.0 411960.0 377870.0 416250.0 414820.0 285080.0 319600.0 277710.0 189096.0 342190.0 False True 182531.94871098886 425671.83956492075 431070.81149508123 468947.20732092607 467644.86816923 265373.0906061365 304139.7270094371 298434.13038280595 142495.8245565826 320351.1412364018 0.5697871030098506 1.3287664215024537 1.3456197153890403 1.4638537122453028 1.4597883633700977 0.8283819111176679 0.9493948603885212 0.9315844146238821 0.4448113529629301 1.0 18.289294604483747 2.7209083701976304 23.750148753495427 0.8453094284499886 1.2578714258724075 0.3420434315042419 0.27789866579442296 495.3338034369958 666443.5001629071 0.09030334643980827 0.08534884952309273 525.9062961253677 -2.7209083701976304 0.41256199742241895 GALQNIIPAS(ph)TGAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 GALQNIIPASTGAAK 15 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 GALQNIIPAS(0.928)T(0.072)GAAK;GALQNIIPAS(0.974)T(0.026)GAAK;GALQNIIPAS(0.965)T(0.035)GAAK 213.49 3.6429e-10 755000000.0 2159490.0 1823640.0 1702740.0 1712360.0 1570980.0 2362110.0 2334160.0 2088080.0 2721570.0 2127220.0 True False 2147863.545781897 1884338.7549863395 1942470.9915186039 1929144.6004277738 1771034.9910720228 2198822.8955088416 2221247.763442888 2243903.1326553947 2050875.5406696007 1991458.998395334 1.0785376688712094 0.9462101687781123 0.9754009462829999 0.9687091735166169 0.8893153173121199 1.104126621376888 1.1153871434122982 1.1267634103757465 1.0298356844515217 1.0 20.925394346078416 2.716502751851002 24.79327149361901 1.0899071123846542 0.9702688920538514 0.43979978965300304 0.057258087951929514 575.1131850327806 646432.3608634231 0.018023077439580794 0.017006143215185614 520.5983074951655 -2.716502751851002 -0.11963822033080285 GALQNIIPASTGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GALQNIIPASTGAAK 15 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 225.23 2.3898e-12 643070000.0 942540.0 1009310.0 927340.0 833490.0 850390.0 1102190.0 1063950.0 1003390.0 1368720.0 1100540.0 False True 937465.4693660385 1042904.2732092204 1057901.411416224 939009.7485403458 958682.1258435735 1025998.1995761805 1012482.6738163029 1078268.0569111798 1031417.2959083531 1030302.5949803027 0.9098933400084864 1.0122310458018002 1.026787097858808 0.9113921998403758 0.9304859858786452 0.9958222026955057 0.9827041868565414 1.0465547327208218 1.0010819160637674 1.0 19.974636681649695 2.189326014287229 2.207767742762331 1.0189285411674485 0.9635450278536493 0.25204220933992216 0.039447176846037026 0.4317683565788139 4.227955128199311 0.019505966027433805 0.012574714257950152 154.64148598956493 -2.189326014287229 -0.055383513313799204 GALS(ph)PSGSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GALSPSGSAK 10 0 Q13207 Q13207 TBX2 T-box transcription factor TBX2 1 GALS(0.845)PS(0.14)GS(0.015)AK 65.695 0.071538 139580000.0 364200.0 351850.0 306540.0 310030.0 334600.0 371750.0 388010.0 361680.0 458790.0 408740.0 True False 362239.1876664244 363561.11455218337 349698.167506556 349279.76621190814 377209.3266704215 346051.7975053715 369240.47395785904 388670.39817382634 345727.3519710332 382653.8632600802 0.946649759603288 0.9501043879572176 0.9138759622789303 0.91278254252071 0.9857716408681384 0.9043468019821579 0.9649464160953618 1.0157231782856895 0.9034989194295707 1.0 18.54568043957078 2.0130492548324606 24.36090142017721 0.97869949029703 0.9363508663489385 0.19435755070424932 0.03507431808989161 231.84751478071928 432820.6863350468 0.01262541177805017 0.009318555414932341 103.05029867061133 -2.0130492548324606 -0.04234862394809147 GALSPGGFDDSTLPLVDKS(ph)LEGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GALSPGGFDDSTLPLVDKSLEGEK 24 1 C9JJX6;E9PDC3;O00192-2;O00192 C9JJX6 ARVCF Armadillo repeat protein deleted in velo-cardio-facial syndrome 1 GALSPGGFDDS(0.018)T(0.018)LPLVDKS(0.964)LEGEK;GALSPGGFDDSTLPLVDKS(1)LEGEK 97.257 0.0036372 187002000.0 64569.0 79634.0 85563.0 102692.0 103193.0 92328.0 81013.0 73665.0 86356.0 84032.0 True False 64221.36767829028 82284.56955023044 97609.52667307184 115692.79667075213 116334.01687716917 85945.58267673418 77094.09169028634 79162.2563632905 65074.72091111519 78669.00581658525 0.8163490438409853 1.0459591893416675 1.2407621738686507 1.4706274150773797 1.478778277030714 1.0924961080239666 0.9799805004531164 1.0062699476316663 0.8271964318811301 1.0 16.26350773113941 2.422783298227857 4.3807706580649555 0.9631923800678874 1.2233308274016776 0.29333269905741577 0.18637186911186396 0.2950128207796482 11.878746901102572 0.07314975402777948 0.061362224472648275 264.7178934833772 -2.422783298227857 0.2601384473337902 GANDFMCDEMER ddPTM_BT-474_Trastuzumab_2h_R1 4 GANDFMCDEMER 12 0 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 ;;; 229.68 1.7702000000000002e-11 3069950000.0 1478470.0 1823440.0 1641840.0 1745810.0 1670160.0 1714380.0 1745740.0 1547320.0 1932220.0 1751510.0 False True 1470510.0817934603 1884132.0981072409 1872996.800870892 1966829.3669980664 1882844.976186107 1595868.945816434 1661291.8868255783 1662788.8755317559 1456050.2714214993 1639727.1322568469 0.8968017012498392 1.1490522179223843 1.1422612726380779 1.1994857731548363 1.1482672568786756 0.9732527531089588 1.0131514287618395 1.0140643786525432 0.887983276472017 1.0 20.645024324598612 2.7330367154166493 24.575414445880053 0.9844579715242926 1.1165779973313332 0.3732057310530922 0.08322744164314447 393.49237118512906 1750610.5629718315 0.026744217058356983 0.02588985425231578 540.800040449155 -2.7330367154166493 0.13212002580704063 GANFLTQILLRPGASDLTGSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GANFLTQILLRPGASDLTGSFR 22 1 Q5QPJ9;Q5QPK2;O60762;H0Y368 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 0 163.95 1.324e-11 142870000.0 55942.0 66805.0 102300.0 79830.0 91286.0 96724.0 80140.0 74111.0 77267.0 83672.0 False True 55640.814487740536 69028.5640405248 116702.95079245996 89936.46981484562 102910.7310054874 90037.69754380504 76263.32203547022 79641.53914803264 58225.58317475502 78331.98132479687 0.7103205299637533 0.8812309209223721 1.4898506180835787 1.14814496319111 1.3137766882057642 1.1494372543759799 0.9735911277317354 1.0167180479937792 0.7433181465604402 1.0 16.25731382983133 1.8188822597090346 1.805221353656454 0.8923389426600143 1.1284539327158687 0.14662132814201045 0.21254883931587812 0.652519018249116 4.081253088459266 0.15333820721756938 0.06632356962803818 65.89952127836439 -1.8188822597090346 0.23611499005585435 GAPGS(ph)PTQERPAGGLGEAPNGAPSVCAEEGSLGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GAPGSPTQERPAGGLGEAPNGAPSVCAEEGSLGPR 35 1 A0A0J9YWL0;A0A494C1M5 A0A0J9YWL0 1 GAPGS(0.849)PT(0.151)QERPAGGLGEAPNGAPSVCAEEGSLGPR;GAPGS(0.818)PT(0.182)QERPAGGLGEAPNGAPSVCAEEGSLGPR;GAPGS(0.996)PT(0.004)QERPAGGLGEAPNGAPSVCAEEGSLGPR 333.03 6.331199999999996e-118 4871880000.0 164363.0 217473.8 189132.0 212450.3 209647.7 190270.0 224259.0 186430.0 203576.0 184517.0 True False 163478.08787044612 224712.2839673116 215760.14163518575 239346.48619697997 236345.0919157281 177117.08274740295 213410.73541742584 200342.35327235813 153407.42257864185 172740.96708704875 0.9463770559306015 1.3008627180723906 1.2490386343990914 1.3855803300925538 1.3682052144389556 1.0253333979434593 1.2354378872377305 1.1597848307251881 0.8880778263869264 1.0 17.39825074609556 1.36605396486877 4.1053560931936826 0.946108165627754 1.2233989546848514 0.38986007088479824 0.1332110505200787 0.21661808364996502 5.687607405336285 0.10009149693368949 0.033891277799006636 23.230254345499134 -1.36605396486877 0.27729078905709736 GAPPSTFKGT(ph)PTAENPEYLGLDVPV ddPTM_BT-474_Trastuzumab_2h_R1 4 GAPPSTFKGTPTAENPEYLGLDVPV 25 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 GAPPS(0.044)T(0.044)FKGT(0.793)PT(0.118)AENPEYLGLDVPV;GAPPS(0.124)T(0.124)FKGT(0.629)PT(0.124)AENPEYLGLDVPV;GAPPS(0.008)T(0.007)FKGT(0.938)PT(0.046)AENPEYLGLDVPV;GAPPS(0.033)T(0.028)FKGT(0.882)PT(0.057)AENPEYLGLDVPV 133.27 0.00010043 981050000.0 1407680.0 2033140.0 1959490.0 1985970.0 2128540.0 2682590.0 2744040.0 2134790.0 2722020.0 2576130.0 True False 1400101.2072879504 2100811.8358409167 2235369.1598075954 2237393.59837391 2399596.9521549908 2497148.86743762 2611300.301949234 2294098.8700439697 2051214.6441992898 2411719.1778641455 0.5805407280162282 0.8710847660553195 0.926877880445132 0.9277172976479704 0.9949736164059158 1.0354227351001672 1.0827547112105484 0.951229683414326 0.8505196886214075 1.0 21.201630498001112 5.149647844311642 1.1282308917297454 0.9836679082823339 3.130731257246613e-13 0.8001892490322637 0.059187330427581654 1.6183860265585315 0.9138996011721643 0.017999695903795604 2.3534607120848627 141139.2626761339 -5.149647844311642 -0.9836679082820208 GAPQHYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GAPQHYPK 8 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5;H0YD99;H0YEN8;H0YDC0;H0YCF8 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ; 100.45 0.0060947 342310000.0 903090.0 1042430.0 978020.0 904120.0 799750.0 961690.0 1035260.0 886600.0 1323170.0 1026230.0 False True 898227.8637827307 1077126.6523877592 1115716.714897767 1018581.4992984867 901593.4220103698 895210.6338747571 985180.5187227473 952762.5940635785 997092.4830696227 960735.1228002937 0.9349380932016198 1.1211484069076338 1.1613156305202437 1.0602105357922023 0.9384412005074394 0.9317975502607319 1.0254444699088356 0.9917016370615479 1.0378432716848704 1.0 19.8737792054403 3.3969043095539067 6.985996424191337 0.9878463856076088 1.0827267327389274 0.2881904553900593 0.06258837637467879 0.2552859476865831 18.4149309943934 0.01758280644586218 0.023877399092592285 2494.04513997809 -3.3969043095539067 0.09488034713131854 GAPS(ph)PGVLGPHASEPQLAPPACTPAAPAVPGPPGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAPSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 36 0 O96013;O96013-4;O96013-3;M0R0L9 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 GAPS(1)PGVLGPHASEPQLAPPACTPAAPAVPGPPGPR;GAPS(1)PGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 190.0 1.5019e-23 863170000.0 102760.0 204434.0 227300.0 254620.0 210610.0 243950.0 230460.0 211890.0 178752.0 236080.0 True False 102206.7515777094 211238.4621070374 259301.8642729829 286854.8658932232 237429.9351167291 227086.31069653115 219311.76935730528 227702.30775561876 134700.964754084 221013.1722817434 0.4624464258058708 0.9557731782509081 1.173241674222158 1.297908459173402 1.0742795674370842 1.0274786265094003 0.9923018030695961 1.0302657773960557 0.6094703015364612 1.0 17.753772830565893 -3.1450510150386233 9.912732841143487 0.9999863030188494 0.9858399217177372 0.0 0.23680716069924787 0.0 0.0 0.0 0.05232277704947589 0.0007160592923169277 3.1450510150386233 -0.014146381301112232 GAPSS(ph)PATGVLPSPQGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GAPSSPATGVLPSPQGK 17 0 Q5SRE5;Q5SRE5-2 Q5SRE5 NUP188 Nucleoporin NUP188 homolog 1 GAPS(0.04)S(0.959)PAT(0.001)GVLPSPQGK;GAPS(0.231)S(0.769)PATGVLPSPQGK;GAPS(0.027)S(0.973)PATGVLPSPQGK;GAPS(0.007)S(0.993)PATGVLPSPQGK 239.19 2.9677e-20 1565090000.0 1640730.0 1856530.0 1636220.0 1600180.0 1643670.0 1787000.0 1738280.0 1567330.0 1972250.0 1635640.0 True False 1631896.49198224 1918323.4787539174 1866585.553720808 1802762.623929849 1852981.6317046362 1663468.8961455245 1654192.7555255436 1684292.1233404772 1486215.4142960212 1531252.0548581446 1.0657268911442663 1.252780998835382 1.2189930115024261 1.1773127867553177 1.2101088294547933 1.0863455763980205 1.0802876967755568 1.0999444003988685 0.9705883558364952 1.0 20.546280349460062 1.9669261103924893 0.7941347348577624 0.9942479610098799 1.1924532470634999 0.625188722153009 0.05526007635644723 0.40213239039215015 0.4750368264275635 0.04672455908720018 0.023670877932713365 92.66721486464091 -1.9669261103924893 0.19820528605361998 GAPVNIS(ph)SSDLTGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GAPVNISSSDLTGR 14 0 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 GAPVNIS(0.385)S(0.385)S(0.227)DLT(0.003)GR;GAPVNIS(0.333)S(0.333)S(0.333)DLTGR;GAPVNIS(0.915)S(0.084)SDLTGR;GAPVNIS(0.895)S(0.101)S(0.004)DLTGR;GAPVNIS(0.481)S(0.481)S(0.039)DLTGR;GAPVNIS(0.919)S(0.075)S(0.006)DLTGR 301.27 7.263399999999998e-44 7736090000.0 2548840.0 2923010.0 2692160.0 2957270.0 2811050.0 2626440.0 2666630.0 2654240.0 3248190.0 2530430.0 True False 2535117.328642744 3020300.6208531396 3071192.7273257934 3331660.078784273 3169020.5551012824 2444880.384774734 2537634.9193841494 2852312.8667576252 2447717.0980160683 2368935.790989883 1.070150292078377 1.2749609475869659 1.2964440568659168 1.4063952646821662 1.33774016465726 1.0320585277463838 1.0712130438637908 1.2040481964966043 1.0332559908655297 1.0 21.175807664788824 2.7397253782195423 24.999910558022588 1.091037071790399 1.2852706944949772 0.5354391468814568 0.09602162185095768 93.83281698412293 2013997.4237987073 0.0315773196317717 0.0318197583670297 549.1934870164923 -2.7397253782195423 0.19423362270457822 GAPVNISSS(ph)DLTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GAPVNISSSDLTGR 14 0 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 GAPVNISS(0.003)S(0.997)DLTGR;GAPVNISS(0.034)S(0.965)DLTGR;GAPVNIS(0.001)S(0.191)S(0.808)DLTGR;GAPVNIS(0.002)S(0.1)S(0.898)DLTGR 236.4 3.0428e-17 451240000.0 1163700.0 984580.0 934960.0 1053290.0 909980.0 1015850.0 928170.0 902520.0 1230640.0 1045710.0 True False 1157434.7684992254 1017351.1501088217 1066594.241181997 1186636.406003743 1025860.5591259722 945626.6805536818 883270.8711462741 969870.6253036999 927365.2617311459 978971.8925226263 1.182296220493863 1.0392036358544465 1.089504458022369 1.2121251029444822 1.047895825162582 0.9659385399891102 0.9022433410935337 0.990703239502133 0.9472848697846679 1.0 19.9009079133257 2.915434535934282 3.6426500110745748 0.9588251192205021 1.1223085058574747 0.7048333015570782 0.05137639406362909 0.1343103236339774 3.3597414814603956 0.01599366291720914 0.017468389631025368 823.0657614507572 -2.915434535934282 0.1634833866369726 GAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTR 34 1 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 139.3 2.7696e-10 168530000.0 19557.0 20911.0 19757.0 23929.0 27744.0 24635.0 21984.0 19444.0 22664.0 21582.0 False True 19451.70728498696 21607.009994033553 22538.61386907752 26958.40894650436 31277.033948428492 22932.040434552327 20920.54993296452 20895.010014631396 17078.760882040802 20204.61828272019 0.9627356979875661 1.0694094633063544 1.1155179253425174 1.3342696491108812 1.5480140981024069 1.1349900361228176 1.0354340596900375 1.0341699962974138 0.8452899551508604 1.0 14.302397475103058 2.2069602224754297 2.910403196580078 0.9780412316533253 1.2104942217734918 0.3231982473025682 0.15600216962117205 0.3564916662120595 6.197543693920354 0.07256059801385797 0.051492670492563494 161.04981210718768 -2.2069602224754297 0.2324529901201664 GAQPGRHS(ph)VTGYGDCAVGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAQPGRHSVTGYGDCAVGAR 20 1 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 GAQPGRHS(0.975)VT(0.025)GYGDCAVGAR;GAQPGRHS(0.996)VT(0.004)GYGDCAVGAR 179.92 3.4106e-17 643170000.0 255020.0 189260.0 192191.0 230930.0 169481.0 221460.0 201745.0 205594.0 291140.0 232580.0 True False 253647.00065538564 195559.40468991426 219249.82224588117 260165.7143222139 191063.4007574109 206150.9914607652 191985.82360925816 220936.4682651783 219392.44807612768 217736.54527824422 1.1649261741121668 0.8981469070339574 1.0069500366403956 1.1948647113407154 0.877498081515219 0.9467909541658525 0.8817344987444374 1.0146963064139964 1.0076050751873895 1.0 17.73222404671638 3.207602105040807 24.99948914559154 0.954141323860742 1.049983282296696 0.26726113633885307 0.08883017592064446 309.734935376745 250115.05921774104 0.025653306429545813 0.030664468602903158 1612.8801798390766 -3.207602105040807 0.09584195843595389 GAQPWGAPWTGPFCPDPEGS(ph)PPFEAAHQTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GAQPWGAPWTGPFCPDPEGSPPFEAAHQTDR 31 0 O14924-5;O14924-4;O14924;E9PBG5 O14924-5 RGS12 Regulator of G-protein signaling 12 1 GAQPWGAPWTGPFCPDPEGS(1)PPFEAAHQTDR;GAQPWGAPWTGPFCPDPEGS(1)PPFEAAHQTDR;GAQPWGAPWTGPFCPDPEGS(1)PPFEAAHQTDR 199.37 7.339900000000001e-26 509999000.0 83792.0 109024.0 93782.0 120270.0 89292.0 102341.0 109304.0 88321.0 88032.0 103886.0 True False 83340.87318216638 112652.79793360014 106985.69043224317 135496.1696684392 100662.80692485133 95266.40755480096 104016.54793817125 94911.96150495058 66337.69316836463 97255.90653872059 0.8569235139357402 1.1583131754445122 1.1000431155268584 1.3931921925430202 1.0350302671311213 0.9795436693284273 1.0695139415183903 0.9758992012188297 0.6820942349856514 1.0 16.569498249960436 1.5348239665362378 3.475696468845488 0.8362481904065597 1.0934886501082977 0.2948097235003485 0.14832756566696242 0.23173013239176585 6.1575523467889655 0.09835900345022598 0.03867155220621769 34.26288799374237 -1.5348239665362378 0.2572404597017379 GAS(ph)KEILSEVER ddPTM_BT-474_Trastuzumab_2h_R1 1 GASKEILSEVER 12 1 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 1 GAS(1)KEILSEVER 131.48 0.00011986 163270000.0 119030.0 124290.0 99241.0 97270.0 86349.0 117210.0 154930.0 128930.0 168820.0 116400.0 True False 118389.15570547625 128426.9175151084 113213.27018176446 109584.37202668228 97345.0333193791 109107.54858266203 147435.44400992524 138551.4112932744 127216.57307210236 108971.25234494626 1.086425577001885 1.1785394289915623 1.0389278616656636 1.0056264351243316 0.893309301532439 1.0012507540730498 1.3529755861043182 1.27144919702944 1.1674324221713164 1.0 16.73358806292953 2.2557114669419702 24.999983760102165 1.2307630426907092 1.033120016108547 0.33558857758576766 0.10917613149398044 232.43732596754631 338812.28419245454 0.0390646157689908 0.03260888371859629 180.18202643333603 -2.2557114669419702 -0.19764302658216226 GAS(ph)PPISAIEEFSIIPEAPMR ddPTM_BT-474_Trastuzumab_2h_R1 7 GASPPISAIEEFSIIPEAPMR 21 0 A0A2R8YF49;C9J591;A0A2R8YFR7;Q12774;A0A5F9ZH52 A0A2R8YF49;A0A2R8YFR7;A0A5F9ZH52 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 GAS(0.5)PPIS(0.5)AIEEFSIIPEAPMR;GAS(0.9)PPIS(0.1)AIEEFSIIPEAPMR;GAS(0.982)PPIS(0.018)AIEEFSIIPEAPMR;GAS(0.984)PPIS(0.016)AIEEFSIIPEAPMR;GAS(1)PPISAIEEFSIIPEAPMR;GAS(1)PPISAIEEFSIIPEAPMR;GAS(0.999)PPIS(0.001)AIEEFSIIPEAPMR 185.85 3.6167e-17 284527900.0 124281.09999999999 148288.90000000002 140117.90000000002 147843.19999999998 125176.0 137388.7 138298.0 120267.90000000001 148426.8 139431.8 True False 123611.98436652838 153224.6063939669 159845.2823933805 166560.1339612953 141116.42162371986 127891.34254721232 131607.9973903353 129242.90140602172 111849.00395722273 130533.14315043017 0.9469777665897032 1.1738367949769388 1.2245570629458464 1.2759987995489128 1.0810773280858885 0.9797614572095811 1.008234339677751 0.9901156004270766 0.8568628722003936 1.0 16.994056636695074 2.8918397517502683 3.537467620809944 0.9717789631360397 1.1631480828200977 0.49454993725048524 0.08947426002815488 0.2108888762329703 4.858079928281925 0.02894678773410423 0.03135121123546765 779.5424178102235 -2.8918397517502683 0.191369119684058 GASDEEIKR ddPTM_BT-474_Trastuzumab_2h_R1 4 GASDEEIKR 9 1 P25685 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ;;; 134.25 0.00040769 2528710000.0 4924320.0 5596090.0 4812770.0 4927740.0 4580530.0 5208540.0 4859190.0 4575250.0 6041600.0 5716950.0 False True 4897808.008263382 5782352.472742159 5490366.182653252 5551591.37874744 5163833.344571625 4848485.889384338 4624132.415791567 4916678.387648751 4552728.633292347 5352089.356472853 0.9151207466930537 1.0803916167335552 1.0258360458823743 1.037275540258555 0.9648256971506745 0.9059052580130312 0.863986400040035 0.9186465434667094 0.8506451088650541 1.0 22.351670772198933 2.9407462449289103 2.859005472797316 0.9004191813569524 1.0198279510270416 0.45998013575950647 0.0540566123661745 0.20650449275988098 3.3387878923473746 0.01620448807049614 0.018125337249375092 872.461446625447 -2.9407462449289103 0.11940876967008918 GASFEELCHNYTQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GASFEELCHNYTQDR 15 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 0 97.223 0.0033967 412850000.0 94655.0 155770.0 122890.0 155260.0 160930.0 133260.0 145890.0 106440.0 113920.0 116100.0 False True 94145.38799715911 160954.71028504652 140191.8438209716 174915.90008083358 181423.4815931587 124048.04986029801 138832.74334607858 114383.09329136841 85845.94244979204 108690.39860178909 0.8661794345062733 1.4808549085806475 1.2898273042000235 1.6093040630173419 1.6691767067470522 1.1412972208775773 1.277322975460993 1.0523753225934496 0.7898208448412019 1.0 16.729864976886812 1.751700090261819 1.566377630920412 0.893126105725903 1.3767510207717648 0.3981902736078712 0.2224702296157794 0.3598145101659288 1.7133828242174862 0.16977194579203755 0.06736137694069311 56.454698226289246 -1.751700090261819 0.4836249150458618 GASFLFPPAESLS(ph)PEEPR ddPTM_BT-474_Trastuzumab_2h_R1 5 GASFLFPPAESLSPEEPR 18 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 GASFLFPPAES(0.027)LS(0.973)PEEPR;GASFLFPPAES(0.305)LS(0.695)PEEPR;GASFLFPPAES(0.031)LS(0.969)PEEPR;GASFLFPPAES(0.015)LS(0.985)PEEPR;GASFLFPPAES(0.004)LS(0.996)PEEPR 197.14 1.9681e-15 323161000.0 603913.0 764910.0 671548.0 715331.0 711882.0 623330.0 655310.0 573778.0 640422.0 648408.0 True False 600661.5995090418 790369.5669521398 766096.1212001449 805891.8312554602 802535.9530448089 580240.6642609898 623610.1517726982 616596.2279456474 482598.57931514055 607026.0463099822 0.9895153645553943 1.3020356733564806 1.2620481869882276 1.3276066754538005 1.3220782830049902 0.9558744106421517 1.0273202534941097 1.015765685334 0.795021205842456 1.0 19.211398895491175 2.731239551419081 24.824164714786125 0.9701299445791307 1.2500857285335105 0.6239592497733939 0.10910687993462419 344.1803960630984 1167039.7306606798 0.03482562794471396 0.033462158032873 538.5667673132851 -2.731239551419081 0.2799557839543798 GASIVEDKLVEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GASIVEDKLVEDLR 14 1 P00367 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial 0 106.52 0.00085426 62128000.0 165200.0 244090.0 239960.0 232190.0 293510.0 434230.0 274010.0 202690.0 440510.0 326660.0 False True 164310.58155544562 252214.38809447916 273744.2822302899 261585.23019302264 330886.7587299323 404212.70216747076 260755.08948014936 217815.75703896492 331952.2130315832 305812.27913230343 0.5372922958543467 0.8247359746642605 0.8951382953195938 0.8553784397906833 1.0819930438005103 1.3217674035665403 0.8526638963615291 0.7122531431928911 1.0854770579305968 1.0 18.222286810133646 5.09281468803502 1.082770091606092 0.9675695180595122 6.658673080877283e-11 0.4316161350195534 0.15621783618837193 3.8279305803143098 2.2026300037223123 0.051685557182870843 5.08431231473211 123826.81090360867 -5.09281468803502 -0.9675695179929255 GASPPIS(ph)AIEEFSIIPEAPMR ddPTM_BT-474_Trastuzumab_2h_R1 2 GASPPISAIEEFSIIPEAPMR 21 0 A0A2R8YF49;C9J591;A0A2R8YFR7;Q12774;A0A5F9ZH52 A0A2R8YF49;A0A2R8YFR7;A0A5F9ZH52 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 GAS(0.397)PPIS(0.603)AIEEFSIIPEAPMR;GAS(0.472)PPIS(0.528)AIEEFSIIPEAPMR 128.69 1.1423e-05 44138300.0 28782.7 38478.0 35336.0 35147.0 32840.0 34742.0 35699.0 29416.0 33805.0 35257.2 True False 28627.737141258614 39758.716969557805 40311.001653982035 39596.60659629689 37021.979342070066 32340.3673138712 33972.102986576654 31611.17129142136 25474.210713792334 33007.05531079245 0.8673217550521112 1.2045520751606622 1.2212843973634142 1.1996406896482472 1.1216383586319147 0.9798016517788771 1.0292376180394578 0.9577095258505331 0.7717807745625502 1.0 15.010486815352724 2.272210561830112 1.1970342048397298 0.9064558012472507 1.1364590013671056 0.382074377289762 0.11275308118083312 0.4781383445267277 1.3314370157287994 0.07239507290539458 0.04246595722388443 187.158933530851 -2.272210561830112 0.23000320011985498 GASWIDTADGSANHR ddPTM_BT-474_Trastuzumab_2h_R1 4 GASWIDTADGSANHR 15 0 A8MXB9;C9J660;J3KQJ1;Q8NBJ7;A0A494C1B1;H7C3B2;C9JL30;Q8NBJ7-2;E9PBT8;J3QT17;Q8NBJ7-5 A8MXB9 SUMF2 Sulfatase-modifying factor 2 0 ;;; 284.79 5.1520000000000005e-34 2930510000.0 2991170.0 4404390.0 4173110.0 4324150.0 4346770.0 3963160.0 4120150.0 3681100.0 4078310.0 3794060.0 False True 2975065.873070229 4550987.458640024 4760647.614677633 4871586.946634911 4900305.394175696 3689196.0774751506 3920842.6039985353 3955802.3742470527 3073265.147054176 3551919.8425418083 0.8375937535068996 1.2812753835636301 1.3403026604538577 1.3715362853314643 1.3796216163112967 1.0386484608377606 1.1038657339723974 1.1137082337466884 0.8652405694084865 1.0 21.76016759355941 2.7159680932635704 23.766180117319486 1.0446920742227923 1.256894629801289 0.3123069117370947 0.15939594859201486 555.7623077838423 584632.2018878297 0.052590714511659226 0.04962365253109029 519.9577948836109 -2.7159680932635704 0.21220255557849677 GATKES(ph)SEKDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GATKESSEKDR 11 2 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BTY0;H3BUG0;H3BNU7;H3BNI3;H3BTR6;H3BP82 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 1 GAT(0.156)KES(0.696)S(0.148)EKDR;GAT(0.018)KES(0.491)S(0.491)EKDR;GAT(0.014)KES(0.493)S(0.493)EKDR;GAT(0.019)KES(0.541)S(0.439)EKDR 146.0 1.8772e-05 2057950000.0 3210110.0 2130770.0 1760480.0 1770850.0 1734110.0 1826070.0 2654530.0 2598860.0 4341180.0 2471280.0 True False 3192827.124436747 2201691.3913723375 2008340.2816335273 1995039.428430661 1954938.6296247598 1699838.0790064125 2526120.2426106418 2792800.12994368 3271354.3578317105 2313560.7946307487 1.3800489409427132 0.9516462227757166 0.8680732688306401 0.8623241857575977 0.8449912507861173 0.7347280793101925 1.091875453834278 1.2071436101550206 1.4139910934797062 1.0 21.141683579167477 2.0145215719206733 6.873858319424237 1.2111747764797187 0.9278425891392842 0.29680280212881993 0.18518506283467862 0.1740150625261106 38.52894377868186 0.0727952318419679 0.051700238670593285 103.40024598322067 -2.0145215719206733 -0.2833321873404345 GATLSHYNIVNNSNILGER ddPTM_BT-474_Trastuzumab_2h_R1 1 GATLSHYNIVNNSNILGER 19 0 E9PF16;Q96CM8-3;Q96CM8;Q96CM8-2;Q96CM8-4 E9PF16 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial 0 78.705 0.0097583 360030000.0 372540.0 325470.0 308960.0 270500.0 279800.0 429030.0 402950.0 392000.0 505100.0 385060.0 False True 370534.28603308473 336303.0721992302 352458.88247153856 304745.2722650103 315430.8714954694 399372.16592798824 383457.7690815164 421253.03053566726 380624.87299324054 360485.1411335485 1.0278767243163938 0.9329179869708981 0.9777348418945332 0.8453754052295643 0.8750176789633948 1.1078741405877623 1.0637269760293873 1.1685725220491296 1.0558684105435316 1.0 18.459580268563826 2.729649729597834 24.994448302361914 1.0947304475408712 0.9295997853825712 0.5757617070240977 0.06255401519298324 429.3674448766577 1204344.8553683786 0.020409404998510332 0.019503227197440142 536.5988401273014 -2.729649729597834 -0.16513066215830008 GATQQILDEAER ddPTM_BT-474_Trastuzumab_2h_R1 4 GATQQILDEAER 12 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ;;; 289.22 1.0380999999999999e-35 1725650000.0 1083570.0 1291070.0 1210280.0 1314600.0 1233210.0 1247230.0 1301820.0 1179470.0 1406430.0 1344350.0 False True 1077736.1795159439 1334042.4844817037 1380676.9040576576 1481028.225211027 1390251.9836916642 1161011.9257636159 1238845.993164661 1267488.0406273045 1059834.1716964631 1258552.4320440604 0.8563299804407463 1.059981650756526 1.0970356648671764 1.1767711757591504 1.1046436749827782 0.9224978604013935 0.9843419802165942 1.0070999096706137 0.8421056959662365 1.0 20.263333890609918 2.738417194734599 24.999997686140063 0.959022170193206 1.0676708307035603 0.2652520846235844 0.08859542009471065 19.180117192882218 3343060.4114284883 0.028787020971450417 0.028731447653693308 547.5416933312721 -2.738417194734599 0.10864866051035427 GATRPNGPNTGNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GATRPNGPNTGNK 13 1 P20339-2;P20339;F8WCY6;F8WD79 P20339-2 RAB5A Ras-related protein Rab-5A 0 ; 90.005 0.0065566 104710000.0 44630.0 38733.0 34211.0 31303.0 39130.0 46213.0 40764.0 37888.0 56615.0 45771.0 False True 44389.71703885918 40022.204490407064 39027.611432657344 35265.95659043111 44112.973558319165 43018.40408370066 38792.08958639763 40715.39495136567 42662.99185213292 42849.855593475375 1.0359362108473074 0.9340102536191774 0.910799135542477 0.8230122622817183 1.0294777647987248 1.0039334669368396 0.9053026912021704 0.9501874484161689 0.9956391045254558 1.0 15.387002721928578 GATYGKPVHHGVNQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GATYGKPVHHGVNQLK 16 1 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 153.94 2.4219000000000003e-07 7900900000.0 7309300.0 7607800.0 7305900.0 6872300.0 7250000.0 8597200.0 7919600.0 5881700.0 10622300.0 8702600.0 False True 7269947.540939576 7861021.023987785 8334507.215978815 7742332.475367209 8173244.525883317 8002895.799631945 7536498.692190046 6320622.320667434 8004576.49652762 8147192.617329295 0.892325477303213 0.9648748216983584 1.022991306017621 0.9503067914337833 1.0031976546741523 0.9822887681100817 0.9250424098430806 0.7758037176171951 0.982495059648114 1.0 22.957871586362252 2.0036559755436225 12.173104108463196 0.8835028867389936 0.970710893276317 0.03773095457303399 0.06744443387442638 0.28125926131058304 874.4924894250413 0.025160179377099547 0.018124638261365733 100.84537274257387 -2.0036559755436225 0.08720800653732341 GAVAAEGAS(ph)DTER ddPTM_BT-474_Trastuzumab_2h_R1 1 GAVAAEGASDTER 13 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 GAVAAEGAS(0.997)DT(0.003)ER 92.039 0.0029927 0.0 116750.0 138220.0 119320.0 161010.0 120820.0 140610.0 127600.0 109840.0 122750.0 122000.0 True False 116121.4309721445 142820.56914424553 136119.21885196786 181393.84949127288 136205.7108437547 130889.96166033713 121427.50052066371 118036.81855621842 92499.90726573016 114213.85555054511 1.0167017864199077 1.2504662280754595 1.1917925211072888 1.588194782646116 1.1925498021864531 1.1460077328570004 1.063159105656198 1.0334719722685612 0.8098834140556136 1.0 16.801378152471496 2.090666816199313 1.314650635602717 0.9312548421701209 1.2592783816029793 0.46074678923043033 0.14285331558455502 0.40639991506005474 1.3210264096918836 0.09918045119433425 0.0500349673946025 123.21591776578815 -2.090666816199313 0.32802353943285845 GAVAAEGAS(ph)DTEREEPTESQGLAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GAVAAEGASDTEREEPTESQGLAAR 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 GAVAAEGAS(0.976)DT(0.024)EREEPTESQGLAAR;GAVAAEGAS(0.994)DT(0.006)EREEPTESQGLAAR;GAVAAEGAS(1)DTEREEPTESQGLAAR;GAVAAEGAS(1)DTEREEPTESQGLAAR 339.53 1.7818999999999995e-88 3377700000.0 1812560.0 2070440.0 1916810.0 2021960.0 1973270.0 1997430.0 2063080.0 1807800.0 2195630.0 1956660.0 True False 1802801.3783543454 2139353.343792592 2186680.1867888067 2277939.92868377 2224554.2380123823 1859352.3655444605 1963280.938669052 1942707.2158223942 1654546.4064346673 1831784.2836190932 0.9841777738110703 1.1679068124581944 1.193743284263002 1.243563420133291 1.2144193275953243 1.0150498517603286 1.0717861028866118 1.0605545823245892 0.903243040804863 1.0 20.804818186690834 2.7287174822898623 24.405550708968445 1.0228314529058187 1.1675914096751487 0.47726810700713496 0.07809737262291441 475.73573890189954 1179560.6829913363 0.0259197257552669 0.024733816767707886 535.4482238435439 -2.7287174822898623 0.14475995676933007 GAVAEDGDELRTEPEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 GAVAEDGDELRTEPEAK 17 1 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;;; 226.74 1.8042e-15 6428340000.0 4166980.0 4221250.0 3965340.0 4137320.0 3958340.0 4750780.0 4897030.0 4217870.0 6278640.0 4645630.0 False True 4144545.442675 4361751.754450488 4523625.4046468465 4661104.287791028 4462411.136080682 4422369.760733201 4660141.950428738 4532628.877309877 4731353.301465614 4349141.916076051 0.9529570482294941 1.0028993853541146 1.0401190607107667 1.0717296371870155 1.0260440386150531 1.016837308616321 1.071508366559186 1.0421892329049072 1.0878820219631755 1.0 22.052299355219432 4.541729003531937 2.0551394137543153 1.0469407421599868 0.9447883097113368 0.5611611873541649 0.02549333843322494 0.322456620220138 2.0175733170536554 0.006276423299343672 0.05275073919072822 34812.0022990519 -4.541729003531937 -0.10215243244865002 GAVAGGLIQDLDNCSVMAVDCEDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAVAGGLIQDLDNCSVMAVDCEDRR 25 1 Q8NEU8-2;Q8NEU8;Q8NEU8-3 Q8NEU8-2 APPL2 DCC-interacting protein 13-beta 0 78.717 0.041741 101100000.0 40482.0 45771.0 38187.0 47381.0 50206.0 43830.0 46979.0 28135.0 50098.0 39203.0 False True 40264.049409973006 47294.460065846186 43563.39767264577 53379.4297419166 56599.43650572378 40800.13526472208 44706.44629279204 30234.57656663519 37752.01917880692 36701.03097662311 1.0970822437009844 1.288641185474343 1.186980215907114 1.4544395163154102 1.5421756555497053 1.1116890773643366 1.218125079953967 0.8238072817598298 1.0286364762573903 1.0 15.163532970246548 2.0413909763655003 2.160903296695006 0.9400996988270507 1.30316233762514 0.5049393601340465 0.14303882420530858 0.2448361985018675 2.167091548557694 0.07898985200519502 0.04366180112157134 109.99956719037942 -2.0413909763655003 0.3630626387980893 GAVDDDVAEADIISTVEFNHSGELLATGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GAVDDDVAEADIISTVEFNHSGELLATGDK 30 0 P63151;P63151-2;E5RIY1 P63151 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 191.42 1.9237999999999997e-18 54561000.0 30336.0 30129.0 23166.0 24573.0 25230.0 34636.0 32038.0 31238.0 40469.0 32845.0 False True 30172.674346646432 31131.825551634905 26427.571437518316 27683.939280473533 28442.890950073946 32241.694844374033 30488.199542954764 33569.13818334992 30495.95720681739 30748.803979980752 0.9812633482034159 1.0124564705639778 0.8594666464010825 0.9003257264411773 0.9250080415677927 1.048551184799423 0.9915247293131904 1.0917217529893315 0.9917770208776907 1.0 14.908242675344159 2.7410868494613005 24.955831227625193 1.0326286427678455 0.9337671937044617 0.45495419013152993 0.04830326310659533 192.16827152389547 1898374.3441843663 0.01576835038318 0.016042705194329508 550.917856992841 -2.7410868494613005 -0.09886144906338379 GAVDGGLSIPHSTK ddPTM_BT-474_Trastuzumab_2h_R1 6 GAVDGGLSIPHSTK 14 0 P46777;A0A2R8Y6J3;Q5T7N0 P46777 RPL5 60S ribosomal protein L5 0 ;;;;; 189.3 7.3461e-07 5594660000.0 5830130.0 7178840.0 6787230.0 7093910.0 6743790.0 7821300.0 7753210.0 7071510.0 8570370.0 7817440.0 False True 5798741.227868341 7417783.349699584 7742812.988339265 7991998.278645026 7602571.682925062 7280631.940359813 7378157.612161561 7599221.984600194 6458317.150574307 7318524.286352887 0.7923374987880358 1.0135627155780282 1.057974625127304 1.092023195652707 1.0388121136800554 0.9948224061968705 1.0081482719022843 1.0383544123465893 0.8824616682105382 1.0 22.803121340867204 4.737725859975152 6.2600541503876395 1.0200380539045724 0.7871570948394179 0.6157892504518105 0.05236100326811378 0.07802894033667238 16.742027250535536 0.012431784492618381 0.07750937113809414 54667.07785628125 -4.737725859975152 -0.2328809590651545 GAVEALAAALAHISGATSVDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAVEALAAALAHISGATSVDQR 22 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 132.01 1.1232e-05 129220000.0 129760.0 204110.0 171280.0 209090.0 199060.0 204960.0 198730.0 133140.0 287240.0 213960.0 False True 129061.38657769126 210903.67796289956 195394.73520755177 235560.77256151926 224409.11107894266 190791.59762394344 189116.6706776763 143075.5828712211 216453.55081880512 200304.8896196281 0.6443246933351165 1.0529132781700845 0.9754865973496676 1.1760110949305373 1.1203376587815086 0.9525059422475902 0.9441440547797019 0.714289017821365 1.0806204043737662 1.0 17.611838113480037 2.2586981786720166 3.3063873992242367 0.8879070102985864 1.0069804425944544 0.0 0.16096196910621674 0.5932358705336859 13.558457021403294 0.06343343128227599 0.04805600855775426 181.42543734704046 -2.2586981786720166 0.11907343229586798 GAVECLFEMGFEEGETHLIFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GAVECLFEMGFEEGETHLIFPK 22 0 Q96IV0-5;Q96IV0;A0A0C4DFP4;Q96IV0-3;Q96IV0-2;H0Y2P2 Q96IV0-5 NGLY1 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase 0 202.97 1.343e-22 49226000.0 47390.0 57006.0 62532.0 60808.0 60494.0 66465.0 64269.0 54078.0 79073.0 70363.0 False True 47134.85750552399 58903.410249145294 71335.96206211254 68506.28656521527 68197.55232397033 61870.43099178084 61160.06293857795 58113.5749625199 59586.5186739152 65872.37309920487 0.7155481924803002 0.8942050738089518 1.0829420393687565 1.0399851006133283 1.0352982459165956 0.9392470330255593 0.9284630272310047 0.882214686193253 0.9045752547001294 1.0 16.00738590472715 4.654228384671096 3.530071033394975 0.9691541705745627 0.7051878165940602 0.6161833988566566 0.062034715483245635 0.18850219052012535 3.871081383766163 0.017509859628524898 0.1121981034251688 45105.384018508936 -4.654228384671096 -0.2639663539805025 GAVEKGEELSCEER ddPTM_BT-474_Trastuzumab_2h_R1 1 GAVEKGEELSCEER 14 1 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 183.6 1.2669e-06 443910000.0 201630.0 270470.0 248970.0 275800.0 226230.0 279140.0 327510.0 243830.0 390770.0 287940.0 False True 200544.4464831991 279472.4304474324 284022.81191396585 310716.2517215892 255039.0495297352 259843.70882488054 311667.09009030263 262025.83274365196 294469.9695497306 269563.42268216365 0.7439601578277061 1.036759467091914 1.0536400268550195 1.152664737040188 0.9461189021570118 0.9639427569194229 1.1561920641502705 0.9720377866421472 1.0923958696611955 1.0 18.040265223571236 4.738473376269058 6.941069407711039 1.0415103604472198 0.739408704309894 0.6149666251882808 0.07064669406335002 0.06960589265682206 25.039725663649033 0.01621534647047971 0.09887476070403907 54761.252941966464 -4.738473376269058 -0.30210165613732576 GAVIVVSHDAR ddPTM_BT-474_Trastuzumab_2h_R1 5 GAVIVVSHDAR 11 0 Q8NE71;Q8NE71-2;H0YGW7;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 ;;;; 198.25 5.4308e-08 1974740000.0 1346850.0 1803170.0 1637040.0 1681070.0 1555340.0 1636620.0 1651970.0 1442520.0 1909600.0 1606380.0 False True 1339598.7092491016 1863187.4234107148 1867521.0025932414 1893893.2896360087 1753403.329777568 1523484.3115890797 1572057.8999617626 1550168.1673681384 1439004.6673290306 1503859.4531088886 0.8907738728375081 1.2389372022491842 1.2418188406719557 1.2593552447476482 1.1659356372384428 1.0130496626128334 1.0453489498050428 1.0307932461132037 0.9568744368725512 1.0 20.520238312019554 2.7484011664845345 6.689342988957739 1.0154938916207386 1.1743211625422851 0.3523877444122484 0.10060468450082015 0.1657209703543627 41.03667444539702 0.0314971781575868 0.032030529230984754 560.2748996508814 -2.7484011664845345 0.15882727092154658 GAVVPPVHDIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GAVVPPVHDIYR 12 0 Q12996;E9PLP8;H0YE74 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 ; 120.96 0.00023055 178150000.0 451860.0 636410.0 629270.0 622960.0 521100.0 548540.0 506300.0 471590.0 547350.0 507760.0 False True 449427.23596636567 657592.5221320314 717865.7462871079 701826.6721264729 587458.9961983163 510620.7209242674 481808.33474617626 506782.44048549817 412462.926614236 475354.3220847932 0.9454573464174737 1.3833733944986215 1.5101698100455176 1.4764285071574081 1.2358339219928793 1.0741897090254782 1.0135772672331604 1.0661151417807007 0.8676957533598724 1.0 18.858643752416665 2.7693926233711568 2.5591445367418317 1.0048647990831276 1.3459884829054247 0.5099505108745352 0.15224864440430058 0.24127858901200908 3.128096891176387 0.05355634321917388 0.05442449231149662 588.0207116789666 -2.7693926233711568 0.3411236838222971 GAYGGGYGGYDDYNGYNDGYGFGSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GAYGGGYGGYDDYNGYNDGYGFGSDR 26 0 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 350.71 6.262499999999997e-110 187360000.0 104910.0 120060.0 139420.0 117970.0 111350.0 116570.0 128060.0 123470.0 137070.0 137140.0 False True 104345.17621659668 124056.12452219732 159049.12413963597 132904.98990426335 125529.76247684221 108511.79027626412 121865.24856329328 132683.9583679561 103290.93514389925 128387.60778853907 0.8127355748263376 0.96626245055149 1.2388199054350946 1.0351854995473133 0.977740489437237 0.8451889722486968 0.9491979067326463 1.033463903981242 0.804524182069228 1.0 16.97014643199975 3.0188716478578845 6.546476016894124 0.9364441737365402 1.0241675217076138 0.10625333896095823 0.1155934342501637 0.38647655435791756 65.46555857120325 0.03542771763192223 0.041578985271935036 1044.4115064218015 -3.0188716478578845 0.08772334797107362 GCCFDDTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GCCFDDTVR 9 0 P04155 P04155 TFF1 Trefoil factor 1 0 91.783 0.018356 0.0 333300.0 449780.0 389420.0 445000.0 422060.0 420860.0 414690.0 333420.0 387650.0 388380.0 False True 331505.5498331113 464750.6554022484 444246.9511006821 501336.9543731221 475806.8392543875 391766.9387978765 394629.86043036095 358301.4934724544 292118.8517438719 363593.25589115295 0.9117483464334454 1.2782158301125872 1.2218239582355566 1.3788400809150452 1.3086239404749227 1.0774868137685087 1.085360781687599 0.9854459280172052 0.8034220850106253 1.0 18.47196591439066 2.0256146353943865 1.4253664776998016 0.9128791901338319 1.2249388181436418 0.47286762355899703 0.1288302362134406 0.35463707008216594 1.3458294374765007 0.08782954759842365 0.042535242165077446 106.07538956341168 -2.0256146353943865 0.3120596280098099 GCGPCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GCGPCLR 7 0 O43396;K7ER96;K7EPB7 O43396 TXNL1 Thioredoxin-like protein 1 0 81.672 0.090726 0.0 121860.0 148060.0 157530.0 147000.0 144940.0 138380.0 143140.0 121650.0 168660.0 152530.0 False True 121203.91929991885 152988.08759583996 179708.85472469422 165610.18492775032 163397.24987331402 128814.11631148173 136215.7713520989 130728.14072618344 127096.00292821233 142795.40481249717 0.8487942553828688 1.071379627353742 1.2585058669126477 1.159772509102873 1.144275266335558 0.902088666512945 0.9539226526999388 0.9154926301573982 0.8900566730077937 1.0 17.123590028307397 2.7364865326517265 24.947660122132476 0.9280165188267867 1.107657812627683 0.3925205811445801 0.10161750350446597 182.78603108738326 2198588.2425990542 0.03357062601639315 0.03311827634054917 545.1129916280984 -2.7364865326517265 0.17964129380089633 GCHLLVATPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GCHLLVATPGR 11 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;; 128.91 0.0011085 758900000.0 1018180.0 1369080.0 1286910.0 1341720.0 1169120.0 1273330.0 1184910.0 788750.0 1471890.0 1208600.0 False True 1012698.2320104335 1414649.000173663 1468095.7419777557 1511581.61443035 1318000.502082854 1185307.694196408 1127591.3765042312 847610.530191345 1109162.4318155234 1131466.113265482 0.8950318707183575 1.2502796005890955 1.2975163151291729 1.3359495231084129 1.1648607825107746 1.0475856769369218 0.9965754725520961 0.7491258644459868 0.9802878043023412 1.0 20.10976194672092 2.4139045118920253 1.9163482080745944 0.8862425817446539 1.2068278342099101 0.45676931056228753 0.13109784646950962 0.2646498357576721 1.982494571559421 0.05844636463485235 0.0445943350033658 259.3609043915255 -2.4139045118920253 0.32058525246525627 GCIVDANLSVLNLVIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GCIVDANLSVLNLVIVK 17 0 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 88.441 0.0099927 5488500.0 7900.7 7208.9 7086.7 7870.8 8884.5 8546.0 9261.3 9484.0 11742.0 9112.3 False True 7858.163509050287 7448.843878627929 8084.445761299363 8867.242472988693 10015.888412442795 7955.235135120121 8813.295537398302 10191.744238776193 8848.341434738932 8530.745212567475 0.9211579191784626 0.8731762223603055 0.9476834156750309 1.039445236264411 1.1740930203480242 0.9325369515667267 1.0331214117630163 1.1947073772361338 1.037229598851877 1.0 13.058456059912011 3.7888181522795428 2.88491617165521 1.0739635721046077 0.8997498308472742 0.4478480180525021 0.07412146777778304 0.22842696312763647 3.7663571810232694 0.020885380911460857 0.040537089968963755 6149.193398626272 -3.7888181522795428 -0.17421374125733347 GCLTTPNS(ph)PSMHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GCLTTPNSPSMHSR 14 0 O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 O75128-3 COBL Protein cordon-bleu 1 GCLTTPNS(0.977)PS(0.023)MHSR;GCLTTPNS(0.994)PS(0.006)MHSR 130.02 4.1569e-05 524840000.0 334170.0 397100.0 407680.0 416030.0 445400.0 482000.0 447210.0 395860.0 450050.0 458680.0 True False 332370.865849777 410317.2334479811 465077.8003819166 468699.35534348304 502119.04990736884 448680.47450595547 425576.74379189743 425401.0833363495 339141.2078610339 429406.64970429474 0.7740235650255064 0.9555446654832679 1.0830707924578864 1.0915046510487127 1.1693322640745003 1.0448847841898428 0.9910809347851629 0.9906718576186382 0.7897903027225569 1.0 18.711985007089314 4.671074054049846 3.117537763080294 1.0248851915979207 0.7535137175112647 0.38232957314379123 0.09370135887870165 0.31897979573653273 4.933510133188878 0.024145282817542267 0.1923678998847327 46889.332902722635 -4.671074054049846 -0.27137147408665596 GCQLLVYPGAFNLTTGPAHWELLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GCQLLVYPGAFNLTTGPAHWELLQR 25 0 Q9NQR4 Q9NQR4 NIT2 Omega-amidase NIT2 0 ; 267.81 1.2201999999999999e-45 1029450000.0 862150.0 1197740.0 1141090.0 1155560.0 1168910.0 1164860.0 1131230.0 1027140.0 1319620.0 1176470.0 False True 857508.2801938709 1237606.051850881 1301745.5534679187 1301853.7775177646 1317763.7598276217 1084335.9699854937 1076508.0831817442 1103790.4025112358 994417.3330020595 1101386.6773733592 0.7785715024616954 1.1236798821667104 1.1819151077552392 1.1820133693849368 1.196458779554415 0.984518872673738 0.9774115715191447 1.0021824534355266 0.9028775755428553 1.0 20.07088963186002 2.6187413157994657 8.240407137612443 0.9753140839567855 1.1040506129407441 0.20694829275943394 0.11558685531013194 0.4669500629650821 29.79388449740912 0.03817317409522932 0.035951829549694475 415.66295027226477 -2.6187413157994657 0.1287365289839586 GCRLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 GCRLSPR 7 1 P17812;B4E1E0;P17812-2;A0A3B3IRI2 P17812 CTPS1 CTP synthase 1;CTP synthase 1 GCRLS(1)PR 55.549 0.076888 225710000.0 71966.0 81236.0 130280.0 79759.0 44957.0 60431.0 68944.0 47743.0 132260.0 63723.0 True False 71578.54305217434 83939.89115180093 148622.2915859401 89856.48122212559 50682.00746898427 56253.54720927261 65608.91532834359 51305.82509404169 99666.29519320143 59656.143583994926 1.1998519976637922 1.4070619739878905 2.491315774991091 1.5062401929418896 0.8495689534075361 0.9429631858463745 1.099784722691088 0.8600258416269212 1.670679484215617 1.0 15.864383098555626 3.400672219317187 5.887531067741808 1.050104937247653 1.7215909928997255 0.3649113214229619 0.38007657799653133 0.2045681060133012 11.943540352108716 0.10667127920834452 0.14553731683978452 2515.7774458382755 -3.400672219317187 0.6714860556520725 GCTSSSSLS(ph)PPRGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GCTSSSSLSPPRGDR 15 1 Q96LT9-2;Q96LT9;X6RLP6 Q96LT9-2 RNPC3 RNA-binding protein 40 1 GCTSSS(0.001)S(0.001)LS(0.997)PPRGDR;GCTSSS(0.001)SLS(0.998)PPRGDR 98.227 0.0018226 946580000.0 232830.0 294150.0 280000.0 297450.0 265910.0 263000.0 281130.0 233670.0 298050.0 268610.0 True False 231576.46914984463 303940.60493257036 319421.56619637087 335107.13950176426 299772.0623279496 244819.42903540758 267530.6678791085 251107.64195221747 224599.57116538376 251467.0798314091 0.9209017311733222 1.2086695607883984 1.2702321369879528 1.3326083864592928 1.1920926688651476 0.9735645286036714 1.0638794869629413 0.9985706364450067 0.8931569544449393 1.0 17.940010020103408 2.7437370046811487 21.986026189958967 0.993320022206186 1.199168034557098 0.4575711304478134 0.10765809898832425 75.87908150822508 322285.34100925137 0.034411694427030126 0.03539768630362366 554.2899504376463 -2.7437370046811487 0.2058480123509121 GCVNPMINIEQLWR ddPTM_BT-474_Trastuzumab_2h_R1 1 GCVNPMINIEQLWR 14 0 Q12996;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 74.76 0.074784 104850000.0 106470.0 132420.0 135090.0 157870.0 150530.0 184620.0 183970.0 166520.0 185370.0 210760.0 False True 105896.77734992917 136827.51965041953 154109.4977766706 177856.32581322416 169699.10323878835 171857.65394873338 175070.668266352 178946.5679714268 139688.04733074043 197309.11635928566 0.5367049394570232 0.6934678040991603 0.7810561448972705 0.9014095703989704 0.8600672202584828 0.8710071643916999 0.8872913299533558 0.906935124303015 0.7079655005721002 1.0 17.59009808950736 4.517350074097578 1.2870985361692673 0.8756447505479252 0.4649008306909896 0.7133771477311529 0.06884527830028433 0.47181759272701157 0.9146450137509589 0.018460881099518857 0.23059272573923847 32911.68169510244 -4.517350074097578 -0.41074391985693565 GCWDSIHVVEVQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GCWDSIHVVEVQEK 14 0 P47756-2;B1AK88;B1AK87;P47756;B1AK85 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 240.11 2.1924e-17 1408860000.0 1901420.0 2065000.0 2040050.0 1989500.0 2056900.0 2611600.0 2539100.0 2361400.0 2899700.0 2680800.0 False True 1891182.9659876225 2133732.2766811396 2327271.3075675243 2241370.496011967 2318834.0227985354 2431066.2390451343 2416274.0326960627 2537619.658946233 2185107.7889893097 2509709.0488516465 0.7535466977150043 0.850191091934525 0.9273072146081638 0.893079816179305 0.9239453568769461 0.9686645709619223 0.9627705784467979 1.0111210540948392 0.8706617964298041 1.0 21.259088691225717 6.09691320988166 0.51633216009563 0.9677848801014037 1.3647452770165278e-11 0.7212083103088303 0.03900063870636482 7.865720758246347 0.5385895421321695 0.01997941250554171 6.249400163739979 1250009.2013757466 -6.09691320988166 -0.9677848800877563 GDAASS(ph)PAPAASVGSSQGGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDAASSPAPAASVGSSQGGAR 21 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;F8WCC1 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 GDAAS(0.003)S(0.997)PAPAASVGSSQGGAR;GDAAS(0.002)S(0.998)PAPAASVGSSQGGAR 461.91 1.837099999999998e-223 905720000.0 595580.0 626130.0 563530.0 624530.0 525830.0 747320.0 758290.0 585740.0 763570.0 778760.0 True False 592373.4634551592 646970.3585464229 642870.1257094318 703595.4339654963 592791.3336614098 695659.5274020563 721608.6157508951 629450.8931274529 575398.404813797 729058.8700700208 0.8125180116089474 0.8874048243652617 0.8817808164760259 0.9650735528365783 0.8130911754828201 0.9541884146272622 0.9897809976327288 0.8633745764138344 0.7892344890592088 1.0 19.475675788480046 4.955157408202465 1.5789495936328846 0.9052413981137754 0.7335303578794379 0.14860955171158152 0.06802376845678253 3.8410582547379954 5.9372585987039415 0.017601810899422882 1.1917766257665683 90189.79674860911 -4.955157408202465 -0.17171104023433748 GDAAVRDELMAAVR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDAAVRDELMAAVR 14 1 Q15008;Q15008-4;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ;;; 170.11 2.9412e-06 899980000.0 537020.0 731310.0 719830.0 764580.0 692850.0 624090.0 748020.0 563180.0 777850.0 741340.0 False True 534128.743988531 755651.2112637705 821175.8071254779 861375.7496058468 781080.3406563103 580948.1272498383 711835.4148861046 605207.3513700947 586159.290155994 694027.0465068945 0.7696079665437432 1.0887921660503526 1.183204330808915 1.2411270626141078 1.1254321349399328 0.8370684257534438 1.0256594731701616 0.8720227178698036 0.8445770133976631 1.0 19.404632360728893 2.748093689433075 24.723914186228882 0.9142516046628418 1.0965341489347247 0.2861739338987276 0.1298284155003376 727.8986264721361 1887796.3545037874 0.040957579932503534 0.04292750199077111 559.8783698485774 -2.748093689433075 0.18228254427188284 GDADQASNILASFGLSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDADQASNILASFGLSAR 18 0 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ; 213.94 6.234300000000001e-17 249360000.0 140903.0 160979.0 194466.0 142919.0 184644.0 185878.0 176307.0 175855.0 206271.0 201660.0 False True 140144.39390379505 166337.08870113947 221845.1224712267 161012.53074618478 208157.31892926892 173028.6913697469 167778.3568518549 188978.19307359637 155438.27593979158 188789.88615018805 0.7423299879120959 0.8810699137178 1.175090080274439 0.8528662950625144 1.1025872369226046 0.9165146232044303 0.8887041582216016 1.0009974417975893 0.8233400586731418 1.0 17.526421953163045 4.479825688025706 24.99971996016905 0.9701243018482312 0.7770148960732892 0.31118437612696026 0.10363611440583019 98.80677731454138 913349.2862795551 0.023424290237062866 0.06678398885650429 30187.398511753432 -4.479825688025706 -0.19310940577494196 GDAPVDKVELSEDS(ph)PNSEQDLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDAPVDKVELSEDSPNSEQDLEK 23 1 Q5T5P2;Q5T5P2-3;Q5T5P2-7;Q5T5P2-9;Q5T5P2-2;Q5T5P2-8;Q5T5P2-6;Q5T5P2-4 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 GDAPVDKVELSEDS(0.999)PNSEQDLEK 259.45 6.670999999999998e-44 251360000.0 126360.0 95193.0 82118.0 85163.0 82644.0 123520.0 116340.0 113120.0 196640.0 136100.0 True False 125679.69179991573 98361.44145961636 93679.5006175485 95944.62706804078 93168.22353063458 114981.35313480414 110712.18973804095 121561.58881172117 148180.70684100353 127413.98147892789 0.9863885449706398 0.7719831082735898 0.7352372128253563 0.7530149042859036 0.7312244892531125 0.9024233588824795 0.8689171192437062 0.9540678927125859 1.1629862368401862 1.0 16.959164071525244 1.7129108162175537 1.4754760488566925 1.0777340636387742 0.7991877753610597 0.5976796690105544 0.08565365292673437 0.2542095358780532 1.0719550247428777 0.06811578227852645 0.026064705620176078 51.63103323812044 -1.7129108162175537 -0.27854628827771455 GDAVANHVPAGWPDQSLAES(ph)DSEDPSGKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDAVANHVPAGWPDQSLAESDSEDPSGKPR 30 1 Q9NYQ6;A0A6I8PL36;A0A6I8PRU0 Q9NYQ6 CELSR1 Cadherin EGF LAG seven-pass G-type receptor 1 1 GDAVANHVPAGWPDQS(0.409)LAES(0.55)DS(0.032)EDPS(0.008)GKPR;GDAVANHVPAGWPDQS(0.289)LAES(0.71)DS(0.001)EDPSGKPR 165.26 1.8714e-12 305103000.0 185315.0 190487.0 190867.0 180393.0 209261.0 257404.0 220856.0 171099.0 251580.0 221803.0 True False 184317.28463043197 196827.24464317676 217739.41455429554 203230.73530388885 235909.14796287825 239610.26734384007 210172.35152814837 183867.2762031175 189581.47999928624 207647.3426448979 0.887645766532331 0.9478919505354575 1.0486019795912163 0.9787302486766615 1.1361048254121482 1.1539288887197687 1.0121600828168003 0.8854785900995267 0.9129973809657345 1.0 17.663775883509615 1.8438285982469915 6.3440826181097965 0.9232834850372742 1.030133929814865 0.20895269234337666 0.08008205060925162 0.34561252840575823 17.34318679862999 0.03838075351027179 0.02315096727646765 69.79568890761252 -1.8438285982469915 0.10685044477759087 GDDALEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDDALEKR 8 1 Q9Y617 Q9Y617 PSAT1 Phosphoserine aminotransferase 0 99.802 0.01051 398080000.0 355890.0 439330.0 338920.0 344850.0 378250.0 349080.0 352670.0 396840.0 602330.0 426710.0 False True 353973.9277830962 453952.8334694071 386636.9900545504 388507.9746417325 426417.895436602 324948.92124593153 335610.0047697685 426454.2159126895 453893.8423084908 399477.00247518957 0.8860933810703673 1.1363678776417194 0.9678579434083027 0.9725415286349599 1.0674404103227084 0.813435865475418 0.8401234681603789 1.067531330390353 1.1362202066605347 1.0 18.607752925349754 1.593944381483009 11.495937368160241 1.0778581022042124 0.9612125335587431 0.21935460749541869 0.09683799288963081 0.14779096503483524 62.824592040188485 0.05206705682279398 0.02497717364331969 39.259465400850964 -1.593944381483009 -0.11664556864546927 GDDDEES(ph)DEEAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDDDEESDEEAVK 13 0 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 GDDDEES(1)DEEAVK;GDDDEES(1)DEEAVK 324.7 1.6285999999999993e-51 1127420000.0 1986640.0 1558490.0 1381750.0 1183950.0 1230480.0 1794970.0 1689540.0 1679910.0 2245720.0 1644160.0 True False 1975944.150976452 1610363.3975229017 1576288.3896136992 1333837.948606871 1387174.3343736415 1670887.9488048851 1607810.495530425 1805273.4146101323 1692292.397106278 1539228.301163806 1.2837238955926462 1.046214779383481 1.0240770575890996 0.8665627753844962 0.9012141560318264 1.0855361401174417 1.0445562197074756 1.1728431794329472 1.0994421008415325 1.0 20.553775800034703 0.0075756218041402035 8.367460562636817 1.0000000006560068 1.055418280534102 0.022521278628773955 0.11374863422766254 0.0 67371565.04046676 0.11659805261245852 0.028279180784829563 1.0175965404026288 -0.0075756218041402035 0.05541827987809511 GDDDEES(ph)DEEAVKK ddPTM_BT-474_Trastuzumab_2h_R1 5 GDDDEESDEEAVKK 14 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK 260.65 1.1046999999999999e-24 7852120000.0 6080490.0 4257680.0 3909140.0 3318020.0 3563180.0 5873210.0 5631440.0 5482330.0 8364220.0 5121890.0 True False 6047753.31744594 4399394.304978086 4459512.933146005 3738080.9917957415 4016929.8523775088 5467208.816749218 5359025.733010086 5891449.3033076655 6302970.055805828 4795006.595129352 1.2612606880643495 0.9174949434786764 0.9300327006173186 0.779577862435641 0.8377318722476431 1.1401879660192067 1.1176263528925383 1.2286634411081003 1.3144862120123522 1.0 22.193101368874956 2.612930869363928 5.221770769737719 1.1799831762642399 0.9343424964263091 0.366069739520933 0.14058560806554196 0.23341408155112514 8.984169288337652 0.046951102112095924 0.044045188872318515 410.1388122337079 -2.612930869363928 -0.2456406798379308 GDDGIFDDNFIEER ddPTM_BT-474_Trastuzumab_2h_R1 8 GDDGIFDDNFIEER 14 0 O60493-4;O60493;O60493-2 O60493-4 SNX3 Sorting nexin-3 0 ;;;;;;; 334.9 3.3821999999999996e-68 6539982000.0 2648562.0 3293637.0 3152000.0 3305957.0 3131649.0 3014038.0 3018785.0 2759437.0 3220275.0 2980254.0 False True 2634302.4364749016 3403263.7164993905 3595774.202324861 3724490.8172325892 3530445.9374121334 2805684.6473422833 2872754.8366714125 2965360.2010771637 2426681.3757242286 2790051.6381961815 0.9441769465521526 1.2197852075238513 1.2887841046015887 1.3349182381586813 1.2653693892542541 1.0056031253802202 1.0296421748411437 1.0628334474104295 0.8697621730374574 1.0 21.411860392984423 2.731299242596589 23.941423921111905 1.0058371814569809 1.2223660694439553 0.4949577784894674 0.1089450663944884 281.5650366994395 928342.8096639372 0.03608538414423524 0.03469087032499334 538.6407951796335 -2.731299242596589 0.21652888798697445 GDDILTILTEVNYEVSNKDDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDDILTILTEVNYEVSNKDDKK 22 2 Q14790-3;Q14790-2;Q14790;Q14790-4;Q14790-9;H7C0E2 Q14790-3 CASP8 Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10 0 253.11 2.8758e-37 218070000.0 183170.0 139170.0 124600.0 103020.0 101570.0 168230.0 194350.0 191350.0 311020.0 181050.0 False True 182183.83307210027 143802.18931995856 142142.59695738505 116062.32143712156 114504.33744744395 156600.65607082364 184948.54801090126 205629.50865561186 234373.2884544801 169495.23399529653 1.0748610965495105 0.8484143531962028 0.838622972498032 0.6847527136977921 0.6755608092828228 0.9239236548395767 1.09117255778433 1.2131875558301424 1.3827721460355866 1.0 17.370885181497425 2.189956860437828 2.372777955345779 1.2140277633706653 0.8181593284695872 0.6003517239471747 0.13532369421807874 0.19319902656557267 2.1969084326852553 0.06354913877866152 0.04196865935653336 154.86627787066902 -2.189956860437828 -0.39586843490107815 GDDLEEGVTSEEFDKFLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GDDLEEGVTSEEFDKFLEER 20 1 Q6ZVM7-2;Q6ZVM7;Q6ZVM7-4;Q6ZVM7-3;Q6ZVM7-5;F5H3S6;B7Z2U2 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 0 ; 195.39 2.2314e-19 94058000.0 101300.0 100409.0 87164.0 75897.0 87680.0 105243.0 92376.0 87575.0 112708.0 103777.0 False True 100754.61205548815 103751.05286647781 99435.93355693023 85505.55241810533 98845.52827992411 97967.79912537415 87907.41996941103 94110.2911968394 84932.62360982428 97153.86301204018 1.0370623352671189 1.0679045552066215 1.0234892414376486 0.8801045040021591 1.0174122285562055 1.0083778049384726 0.9048268102166638 0.968672662920016 0.8742073755656907 1.0 16.56798374064584 3.962106862887677 10.92391964458639 0.9524436874252507 1.0508184568077776 0.4344767418740344 0.04896632669230829 0.729186460959621 209.51835811906733 0.012156904186369588 0.0221484435314347 9164.459638922151 -3.962106862887677 0.09837476938252698 GDDLLPAGTEDYIHIR ddPTM_BT-474_Trastuzumab_2h_R1 7 GDDLLPAGTEDYIHIR 16 0 K7EM18;P41567;O60739 K7EM18 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b 0 ;;;;;; 220.6 1.134e-14 5278163000.0 4638800.0 5472120.0 4772600.0 5134340.0 4902140.0 5276340.0 5227030.0 4888830.0 5579570.0 5468980.0 False True 4613825.216219133 5654256.206233613 5444540.59581715 5784346.917564265 5526398.471739816 4911599.034968369 4974178.589706314 5253659.319575729 4204559.735907542 5119945.014170659 0.9011474153431883 1.1043587754524944 1.0633982554008092 1.1297673903830445 1.0793862934942076 0.959306988917724 0.9715296894671912 1.0261163557489357 0.8212118927586972 1.0 22.287696885758574 2.7343998118581694 24.54439101840812 0.9642822286146404 1.0628721578971814 0.29473867363816686 0.076334538058253 364.04171505194074 2147461.5180990957 0.02383471630515077 0.02322792836788017 542.5000866132401 -2.7343998118581694 0.09858992928254096 GDDLSTAILK ddPTM_BT-474_Trastuzumab_2h_R1 4 GDDLSTAILK 10 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;; 162.88 1.5434e-05 546860000.0 652319.0 648412.0 615276.0 559320.0 549762.0 660397.0 625161.0 626726.0 798690.0 692311.0 False True 648806.986983454 669994.001446669 701901.5127251372 630129.8546516283 619770.9320053327 614745.309797323 594919.574083062 673495.4765701442 601863.551397687 648127.1192627334 1.001048972802579 1.0337385700027641 1.0829688989462036 0.9722318908186135 0.9562490344646327 0.9484949657663093 0.9179056953515589 1.0391410211877388 0.9286196079595116 1.0 19.30591727573176 3.6422760404859194 8.128362257505106 0.9677259476044753 1.0385598712700674 0.4439378344669135 0.037505916790586596 0.28604702541886345 21.686476355608367 0.010134153904915462 0.015726840714620337 4388.095194291994 -3.6422760404859194 0.07083392366559216 GDDSFGDKYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDDSFGDKYR 10 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ; 149.96 2.0449e-05 543670000.0 591920.0 665060.0 591920.0 561350.0 616850.0 610480.0 587740.0 593330.0 835600.0 684660.0 False True 588733.1684884945 687196.1200627406 675257.1909391285 632416.8524434876 695402.1911436022 568278.9545153439 559308.7708151645 637607.2974686926 629677.5764663469 640964.412633083 0.918511475652724 1.072128353023123 1.0535018444552495 0.986664532349804 1.084931046775107 0.8865998537748031 0.8726050304688885 0.9947624000674246 0.9823908536195173 1.0 19.28988473277376 2.7380073644828467 24.99999929768223 0.9447159990125946 1.0255281370471658 0.2904980192158739 0.05916384119548405 63.53995101429166 2871119.8371225535 0.01866857408513626 0.01859479909226158 547.025238912894 -2.7380073644828467 0.08081213803457121 GDDSRPGPWRPLVKPGGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDDSRPGPWRPLVKPGGWR 19 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 69.737 0.009854 1557210000.0 980440.0 1000790.0 977510.0 932280.0 1038710.0 1054230.0 1076360.0 983840.0 1124060.0 979420.0 False True 975161.4199771245 1034100.6901596708 1115134.911330766 1050306.552411179 1170983.561583485 981353.5614904851 1024292.3547054989 1057259.1366382916 847050.474632315 916912.5770763508 1.0635271500872034 1.1278072915707882 1.216184551515765 1.145481672593221 1.2770940118601708 1.0702804018891414 1.1171101589330763 1.1530642757780105 0.923807237253963 1.0 19.80642466122237 1.244881980290433 24.997802617793837 0.9619035927226072 1.1485549597133085 0.5835484542900722 0.06229316705207192 89.4866643240196 353885.4399169218 0.04344201308635254 0.014998996216505172 17.57445962375315 -1.244881980290433 0.18665136699070128 GDDWNDREWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDDWNDREWDR 11 1 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 165.7 1.9418e-05 812540000.0 459200.0 523320.0 491060.0 565710.0 578870.0 525350.0 530550.0 467850.0 566680.0 585440.0 False True 456727.7182219157 540738.3898463794 560196.9796299643 637328.8279964472 652585.6632687005 489033.7910408796 504885.2696021796 502763.34269416216 427029.30712296575 548076.7179795991 0.8333280784222553 0.9866107647114233 1.0221141698830862 1.1628460160575007 1.1906830592519193 0.8922725140444349 0.9211945208389106 0.9173229334526783 0.7791414835082648 1.0 19.064018325472972 2.6474998974241815 24.99999969696124 0.9002710920170396 1.04213820004941 0.300807264146822 0.10446663168103881 82.82370062559535 22735.07187843301 0.03560453825461951 0.033568281226444355 444.11955646917806 -2.6474998974241815 0.14186710803237035 GDEASEEGQNGSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDEASEEGQNGSSPK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;P35611-5 P35611 ADD1 Alpha-adducin 1 GDEASEEGQNGS(0.019)S(0.981)PK;GDEASEEGQNGS(0.144)S(0.856)PK;GDEASEEGQNGSS(1)PK 201.65 6.6153000000000005e-09 638510000.0 1760658.0 1403307.0 1288274.0 1211630.0 1236351.0 1703028.0 1681931.0 1479768.0 2429850.0 1713691.0 True False 1751178.8129554947 1450015.2251780035 1469651.7813216567 1365022.2337687782 1393792.9714234993 1585301.6828566997 1600569.5719296292 1590195.8022696513 1831046.0258218714 1604321.773215322 1.0915383947235517 0.9038182049177933 0.9160579915188929 0.8508406833082189 0.8687739546351174 0.9881444666050359 0.9976611915712066 0.9911950512786721 1.1413209347350295 1.0 20.613532096444544 1.9835346383184975 1.3708289335213557 1.0544820958922339 0.9239729325717196 0.3242739891858746 0.07262627718360758 0.49665581007200116 1.7344913100947887 0.05181567936511123 0.024083013826764435 96.27968003461693 -1.9835346383184975 -0.1305091633205142 GDECQLVGPAQPSHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDECQLVGPAQPSHWK 16 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 127.88 6.3825e-05 340180000.0 337270.0 307750.0 283110.0 270140.0 263670.0 341850.0 309890.0 295480.0 327600.0 347830.0 False True 335454.17579422006 317993.2727111965 322969.42716376676 304339.69630192214 297246.8116054691 318218.7141283422 294899.4368052392 317530.21801703813 246867.36961509724 325631.1916077547 1.0301659805314285 0.9765442651275293 0.9918258308399577 0.9346146933876052 0.9128327361327334 0.9772365864497978 0.9056240446414788 0.9751222432018284 0.7581195413013938 1.0 18.3128793737416 4.929195452836886 0.5051164109870719 0.9169301911079943 1.1219089110059177 0.2435598663742431 0.0633268167241895 7.782585900238826 1.3270960007103674 0.03537012564306384 0.987555235024887 84956.27319923494 -4.929195452836886 0.20497871989792338 GDEELDSLIK ddPTM_BT-474_Trastuzumab_2h_R1 7 GDEELDSLIK 10 0 Q71UI9;P0C0S5;C9J0D1;A0A494C189;Q71UI9-4;Q71UI9-2;Q71UI9-3;C9J386 Q71UI9 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A 0 ;;;;;; 248.81 1.6371e-12 2849340000.0 4456430.0 4961780.0 4501550.0 4312700.0 4083530.0 5415940.0 5581780.0 5002220.0 6949490.0 5167200.0 False True 4432437.076035919 5126929.84784065 5135329.111825982 4858687.377808905 4603543.340521419 5041548.815551421 5311767.9769297065 5375511.057158486 5236881.307895061 4837424.872137513 0.9162802923443352 1.0598469192504922 1.061583228176696 1.0043954182717874 0.9516516457003397 1.0421968193427904 1.0980569450337727 1.1112340138076828 1.0825762562346606 1.0 22.205807824909638 2.4502860854880493 5.2830643507457 1.0849067555735548 1.0049981467786677 0.31545601674586865 0.050041220792093354 0.20037150372620138 15.394978874825393 0.017383765019583802 0.014784347897798433 282.02401137001397 -2.4502860854880493 -0.07990860879488704 GDEGIFEESFIEER ddPTM_BT-474_Trastuzumab_2h_R1 3 GDEGIFEESFIEER 14 0 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 0 ;; 280.56 6.588e-33 847888000.0 324813.0 371116.0 316896.0 308774.0 332611.0 352964.0 371330.0 322435.0 398993.0 332765.0 False True 323064.24289811694 383468.3717156408 361512.20229059045 347864.75674068875 374967.03931014857 328564.42946788424 353367.34928164684 346496.73699175485 300666.521382285 311527.65280555014 1.0370323147517428 1.230928838137508 1.1604497996723255 1.1166416644169292 1.2036396638734224 1.054687847158686 1.1343049199623132 1.1122503375584183 0.9651358994122924 1.0 18.249000704442935 1.312286326763038 4.296439763066727 0.9817213990528985 1.136266731695391 0.5268509283160285 0.056440145559627966 0.14945612953496717 4.645105276668641 0.04141117350888667 0.01356889493066452 20.52514938982666 -1.312286326763038 0.15454533264249248 GDEHSLGCS(ph)PSNSSAQPSLPLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDEHSLGCSPSNSSAQPSLPLYR 23 0 Q70EL1-7;Q70EL1;Q70EL1-9;Q70EL1-10;Q70EL1-8 Q70EL1-7 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 GDEHS(0.206)LGCS(0.779)PS(0.015)NSSAQPSLPLYR;GDEHS(0.041)LGCS(0.922)PS(0.036)NSSAQPSLPLYR 158.83 1.3405e-11 541590000.0 190152.0 244158.0 234746.0 237330.0 250621.0 282330.0 246380.0 253490.0 270190.0 245941.0 True False 189128.24275987336 252284.65143337214 267796.19635119074 267375.9536660068 282536.0988029522 262813.1916333329 234461.65813699964 272406.710996138 203605.29486051045 230244.83481931643 0.8214223042540384 1.0957233921505833 1.1630931767105332 1.161267977524138 1.2271115615890846 1.141450976911488 1.0183145186340112 1.1831175766001782 0.8842990767644745 1.0 17.812809266522624 1.2354293913784398 24.999999998398486 0.9421495077223417 1.1101656169325465 0.24369156592515662 0.11140071636315763 112.02553539494545 894345.4078348998 0.09146110477312311 0.026611245656546146 17.196077406260088 -1.2354293913784398 0.1680161092102047 GDFCIQVGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GDFCIQVGR 9 0 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;O60361;P15531;P15531-2 Q32Q12;O60361;P15531 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A 0 ;;;;; 187.78 9.338e-05 7034000000.0 2526320.0 3162980.0 2707740.0 2939280.0 2659710.0 3023240.0 2697520.0 2374050.0 3404140.0 2909510.0 False True 2512718.5738205416 3268257.8772382108 3088966.255902009 3311392.5466288324 2998408.303163736 2814250.534741463 2567030.6520728907 2551213.6661816314 2565235.310139002 2723822.58084317 0.9224971521613274 1.199879133179999 1.1340556017219767 1.21571521211333 1.1008089602647932 1.0331989148391232 0.9424368055860144 0.9366298980427327 0.9417776797139713 1.0 21.377201304218318 2.5320481757470366 2.400705810011095 0.9479728515794604 1.127032592966427 0.4869545573922305 0.0765483962007407 0.22645173275515956 2.6062889101505036 0.028116985633579405 0.024504856857623852 340.4459528528179 -2.5320481757470366 0.17905974138696668 GDFDENLNYPEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDFDENLNYPEQK 13 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 ; 244.95 1.0492e-16 317350000.0 436410.0 457870.0 400840.0 395560.0 407290.0 480500.0 472140.0 435540.0 578490.0 482200.0 False True 434060.4170497094 473109.92616173986 457274.7878362618 445637.8554423197 459155.96730303706 447284.1659753358 449300.78445004864 468042.2064273074 435928.89086885727 451425.58316781046 0.9615326052275469 1.0480352549843606 1.0129571847200272 0.9871789992829466 1.0171243820099425 0.9908259138451727 0.9952931362399725 1.0368092192358536 0.9656716569091909 1.0 18.784128655623775 1.2209596682819646 24.995508615316247 0.9828358503274324 1.0079232984630597 0.12117169881388645 0.024853269555150034 525.5042638941508 746259.3787871479 0.0220837817397232 0.005572430047797886 16.632581810463996 -1.2209596682819646 0.025087448135627355 GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK 37 1 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R019;M0R0N3 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 277.79 1.5412999999999992e-76 3762600000.0 484354.0 488859.0 447085.0 479910.0 476115.0 565046.0 510751.0 446418.0 595584.0 463397.0 False True 481746.2918807883 505130.37629349384 510030.6818675168 540666.5567937192 536745.4230953009 525985.6999952116 486044.02287170466 479731.97802467155 448810.3036167226 433822.60672586877 1.1104683905631556 1.1643708014798875 1.1756664451325 1.2462848832941635 1.2372463185959988 1.2124441922584739 1.1203750457818682 1.1058252165448188 1.0345479849562669 1.0 18.72674570900879 1.533073952047615 1.3037089082393 1.0051908840407768 1.1922795258680938 0.7482843091078127 0.039187455692706104 0.21631448655053215 0.7047977330504404 0.037740170740669404 0.013047655357135278 34.125101519882385 -1.533073952047615 0.187088641827317 GDFHSPIVLGRPPNTEDRES(ph)PSVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDFHSPIVLGRPPNTEDRESPSVKR 25 3 Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-3;Q02078-5;Q02078-2;Q02078 Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 GDFHSPIVLGRPPNT(0.29)EDRES(0.394)PS(0.317)VKR 73.936 0.023867 147540000.0 71466.0 71406.0 62658.0 56367.0 62544.0 77154.0 73161.0 68192.0 87191.0 72853.0 True False 71081.23499661907 73782.70554416139 71479.70176690072 63503.056420561305 70508.60767266832 71820.5255809803 69621.92292783926 73280.83331195978 65703.94634954196 68203.45916740871 1.0421939864097907 1.081802982500611 1.0480363113467648 0.9310826341621465 1.0337981171834922 1.0530334745147358 1.0207975339923574 1.0744445253442116 0.9633521107524535 1.0 16.057557291777027 3.987702781092635 24.881408969280397 1.0183136922594214 1.0627287901873406 0.20710081938291824 0.04043884002925111 926.762963115358 1875165.416920939 0.010514566382663078 0.020334974312625795 9720.817307320425 -3.987702781092635 0.0444150979279192 GDFIALDLGGSSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDFIALDLGGSSFR 14 0 P19367-4;P19367-2;P19367;P19367-3;B1AR62 P19367-4 HK1 Hexokinase-1 0 ;;; 190.36 1.4252e-06 423850000.0 655110.0 916740.0 790850.0 843810.0 808290.0 799930.0 771300.0 746640.0 858860.0 743040.0 False True 651582.9605495641 947253.1367189683 902194.8058085727 950636.2594822109 911220.940389825 744632.7219326748 733989.2723478688 802358.0681610985 647205.4611343788 695618.5510514504 0.9366957789792623 1.3617422009334912 1.2969677195136262 1.3666056749712794 1.309943415126702 1.0704612762370092 1.0551605779322875 1.153445472304193 0.9304028194131775 1.0 19.40793688199945 2.7288514548114677 22.201934774011015 1.0608202067262442 1.2689544387991514 0.40685604006720244 0.12665631041703174 153.3607759874701 350688.0616564252 0.03994340716868752 0.03819487490677591 535.6134260679271 -2.7288514548114677 0.20813423207290715 GDFIHVMDNSDPNWWK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDFIHVMDNSDPNWWK 16 0 P62993;P62993-2 P62993 GRB2 Growth factor receptor-bound protein 2 0 ;; 228.84 3.7362e-15 1419270000.0 1888409.0 1962821.0 1818220.0 1716581.0 1774697.0 2254075.0 2126143.0 1893840.0 2380064.0 2192567.0 False True 1878242.0157659636 2028152.31043465 2074209.5717484509 1933899.9785949849 2000694.1434967655 2098256.1007718085 2023293.3404350001 2035167.9575246633 1793529.1184236505 2052635.4969089502 0.9150392354582172 0.9880723165359026 1.0105104266548977 0.9421546014902459 0.9746952863816285 1.0222253799720205 0.9857051305416202 0.991490189363581 0.8737689283482205 1.0 20.96904602848511 4.744048196030864 23.73604745131035 0.9786098725786967 0.9150391787354639 0.17345141167257416 0.04002400953922204 490.86507862191655 2123057.5095549696 0.00918358461604539 0.07735411686112677 55468.726621814654 -4.744048196030864 -0.06357069384323277 GDFILVGDLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDFILVGDLMR 11 0 Q16531;F5GY55;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 ; 125.48 0.00076173 23190000.0 41084.0 48936.0 50554.0 44006.0 37058.0 42647.0 43135.0 35920.0 49621.0 42657.0 False True 40862.80830886151 50564.8051775633 57671.563776754796 49577.15508796315 41777.11664002537 39698.9132702396 41048.39525829808 38600.53279806419 37392.56943733439 39934.59373950494 1.0232433707830197 1.2661905491614533 1.444150506524465 1.2414588567335139 1.0461385162082601 0.9940983381275219 1.0278906435372428 0.9665938521838262 0.936345307060032 1.0 15.285351416559482 3.1822057577106087 3.577763782038423 0.9881014979315883 1.2623208770334686 0.6118711845673672 0.09762761187028687 0.15329397059232663 3.984120111913421 0.029986466497893376 0.037786905400597086 1521.2680972665971 -3.1822057577106087 0.2742193791018803 GDFVTSFYWPWQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDFVTSFYWPWQTK 14 0 G3V3Y1;Q8N8N7;Q8N8N7-2 G3V3Y1 PTGR2 Prostaglandin reductase 2 0 ; 276.56 9.707799999999999e-33 238660000.0 409210.0 493350.0 462820.0 445590.0 438740.0 496640.0 489090.0 498240.0 576280.0 508260.0 False True 407006.8588275046 509770.85651362763 527981.0330964439 502001.64831262775 494610.93838428246 462308.44576480833 465430.848194761 535421.1988114559 434263.5157563747 475822.4116567217 0.8553755536869004 1.071346880737929 1.1096178325399089 1.0550189230573546 1.0394864265895813 0.9715987192682657 0.9781608364646397 1.1252542664966592 0.912658809500698 1.0 18.860063700013516 4.745384350244157 24.682466391078037 1.0366331450313033 0.8553754536695053 0.4059445758653063 0.06252343790463559 649.5120104256433 2349309.5253513516 0.014747803243548505 0.14572419439612871 55639.644982437174 -4.745384350244157 -0.18125769136179803 GDFYTAHGEDALLAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDFYTAHGEDALLAAR 16 0 A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;P43246;A0A2R8Y7S8 A0A2R8YFH0 MSH2 DNA mismatch repair protein Msh2 0 ;;; 288.0 2.1881e-36 1739180000.0 1129720.0 1335180.0 1372860.0 1382580.0 1274480.0 1379640.0 1360880.0 1179030.0 1459290.0 1367190.0 False True 1123637.7130436923 1379620.659166647 1566146.7548869639 1557614.48624088 1436777.4735652092 1284268.7341232311 1295049.0353335496 1267015.205593028 1099667.5329841746 1279934.7636897513 0.8778867055727971 1.0778835752452918 1.2236145148305297 1.216948340203405 1.1225396124278375 1.0033860869760158 1.0118086265586126 0.9899060807915873 0.8591590479299831 1.0 20.287638849471545 2.589547370057032 2.7811299660700803 0.969677079992163 1.1153276876660612 0.31053639959693735 0.09770996669342673 0.3570965563021821 5.371956408073216 0.03707352246510106 0.033875377405275076 388.6398859891287 -2.589547370057032 0.14565060767389815 GDGAELIWDKDDPSAMDFVTSAANLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDGAELIWDKDDPSAMDFVTSAANLR 26 1 Q9UBT2;Q9UBT2-2;K7ESK7 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 129.27 7.3762e-05 332870000.0 335290.0 373080.0 338950.0 329370.0 327650.0 396000.0 388860.0 362370.0 519220.0 403220.0 False True 333484.83589422115 385497.74226837757 386671.2137937856 371068.2082289329 369374.28536629933 368625.45208373136 370049.3562105438 389411.88947757566 391265.1881915471 377486.15438599 0.8834359406814791 1.021223527775261 1.024332175633662 0.982998194549688 0.9785108170844432 0.9765270800019904 0.9802991498124143 1.0315925099583687 1.0365020905944744 1.0 18.526064204000377 1.7488114405163044 7.328555383147195 1.0251041137922063 0.9817182377672894 0.22568448628458926 0.037265481242113735 0.20513315102931481 34.989959122088365 0.017680812055768685 0.009443898371888334 56.080443631789095 -1.7488114405163044 -0.04338587602491695 GDGDVAWQHTQLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDGDVAWQHTQLFR 14 0 Q96IV0-5;Q96IV0;A0A0C4DFP4;Q96IV0-2;Q96IV0-4 Q96IV0-5 NGLY1 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase 0 102.38 0.0029083000000000004 0.0 168600.0 237890.0 257460.0 287940.0 252190.0 186790.0 209170.0 186730.0 191050.0 248590.0 False True 167692.27633322089 245808.02484245852 293708.13011756336 324393.1744768469 284304.9016527602 173877.6469563638 199051.6479930035 200664.74079572706 143968.28743884136 232724.77337139373 0.7205604882708779 1.0562176999102106 1.2620406751835112 1.3938918911703662 1.2216357439482919 0.7471385381000296 0.8553092354948694 0.8622405680700624 0.6186203787127107 1.0 17.828265267121278 2.7381296580633707 24.999631959033465 0.816027295489153 1.1486216592845255 0.4110559860972248 0.18744789856075808 39.84771683774702 2311476.3964135842 0.06195406106084985 0.06179361148859284 547.1792981922079 -2.7381296580633707 0.33259436379537255 GDGGITHSEEINGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDGGITHSEEINGK 14 0 O75363;H7C1E7 O75363 BCAS1 Breast carcinoma-amplified sequence 1 0 ; 259.7 1.9808e-24 1230770000.0 1495100.0 1496380.0 1503020.0 1450530.0 1268450.0 1905690.0 1695110.0 1241870.0 1559210.0 1536450.0 False True 1487050.5477212244 1546186.1037191865 1714632.1515159628 1634166.9492738098 1429979.5888078208 1773954.1358117305 1613111.0533509608 1334544.645488082 1174963.5878435792 1438392.4455789756 1.0338281129686155 1.0749403672631375 1.19204752276476 1.1361064598862183 0.99415120901322 1.2332893858446858 1.1214679681536135 0.9278028743754329 0.8168588422825301 1.0 20.456025918290862 1.6822817832932653 4.526430780647945 0.8985091739856879 1.1151196570534594 0.5744507226008382 0.07773300716389597 0.10915396695196372 5.209017103269036 0.04165176288698479 0.01997076023747539 48.1151432683105 -1.6822817832932653 0.21661048306777153 GDGPPDRDPTLS(ph)PSAFILR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDGPPDRDPTLSPSAFILR 19 1 Q9H7N4;M0R3G4;M0R2L3;M0R232 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 GDGPPDRDPT(0.001)LS(0.991)PS(0.008)AFILR;GDGPPDRDPT(0.008)LS(0.967)PS(0.026)AFILR;GDGPPDRDPT(0.002)LS(0.986)PS(0.013)AFILR;GDGPPDRDPT(0.019)LS(0.906)PS(0.076)AFILR 223.67 1.2997999999999992e-19 621760000.0 455100.0 561360.0 534888.0 549200.0 469579.0 511089.0 499035.0 443899.0 494593.0 496452.0 True False 452649.792166364 580044.5282507146 610195.5810701584 618728.6636892561 529377.102237209 475758.62040409603 474894.77055117104 477024.9974534489 372707.18235665426 464768.0083260585 0.9739263117456376 1.2480302384405593 1.3129035779977245 1.3312634531746563 1.1390136428362425 1.0236475228095456 1.0217888538877402 1.026372273710353 0.8019209060860771 1.0 18.82615124064528 2.7698349824561137 2.375438692927169 0.9765552359354034 1.2261183425523974 0.5250624368542846 0.10959372320666552 0.24811362761681083 2.761535020012673 0.039034195460668775 0.03960788823688481 588.6199567374372 -2.7698349824561137 0.249563106616994 GDGPVQGIINFEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDGPVQGIINFEQK 14 0 P00441 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 188.09 2.0302e-06 182980000.0 235970.0 226070.0 192820.0 191610.0 212660.0 224990.0 268390.0 218420.0 317330.0 244900.0 False True 234699.56373873143 233594.60328779905 219967.37997851524 215867.80635378434 239740.99046542722 209436.9708694918 255406.95035063478 234719.60951428645 239128.27350414786 229270.2723305616 1.0236807474121281 1.0188612806766446 0.9594239049943926 0.9415429403884792 1.0456697592253432 0.9134937937681072 1.11399941978692 1.0237681803590655 1.04299729342744 1.0 17.806689778585227 2.2359072127129296 24.999557688993885 1.0470510445851886 0.9851597853397641 0.2982653163125333 0.04608288235806769 85.98417367048927 810103.6199180699 0.01606567198758271 0.012415062670023309 172.15007359863827 -2.2359072127129296 -0.06189125924542449 GDGRPET(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDGRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 GDGRPET(1)PK 77.185 0.053865 450690000.0 661870.0 520650.0 505250.0 423870.0 468340.0 647390.0 652500.0 601600.0 895170.0 594050.0 True False 658306.5654606693 537979.5205104287 576384.8082882726 477531.8985396302 527980.3229313366 602637.453092139 620936.0822079408 646494.4468629014 674567.3481634521 556137.2204082074 1.1837124747332486 0.9673503242878604 1.0364075396090255 0.8586584048251967 0.9493705933650628 1.0836128764224775 1.1165159594104683 1.1624728990236823 1.2129512706743786 1.0 19.0850813695751 2.497690451752372 3.3318299292210063 1.1375712835661052 0.99215014477771 0.28258917689023844 0.09215794330878965 0.2776405767956823 6.40685822593156 0.03269980233393681 0.02865646502898195 314.5505520679874 -2.497690451752372 -0.14542113878839513 GDHEFTDYMIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDHEFTDYMIR 11 0 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 206.97 2.4573e-08 124340000.0 51693.0 75645.0 66689.0 64696.0 70721.0 54661.0 66297.0 61042.0 74070.0 72987.0 False True 51414.690631632235 78162.79809663183 76078.23152882062 72886.50696656968 79726.90015379226 50882.41372815362 63089.96083086553 65597.2640049953 55816.44098714977 68328.90717268556 0.7524588458833895 1.1439199210239581 1.1134120927260027 1.0667009027726118 1.1668107021278842 0.744668923206397 0.9233275262462518 0.9600221446424329 0.8168788774286494 1.0 16.060208432614672 2.7478624415108253 24.990428883020495 0.8955410565293452 1.0585522345093996 0.28192306287675084 0.1267156027167334 861.4748210138545 2314451.681973817 0.03787378468350415 0.03966299245941844 559.5803318772364 -2.7478624415108253 0.16301117798005438 GDHRYPSSNPESPVVIFYSEIGSEEFSNFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDHRYPSSNPESPVVIFYSEIGSEEFSNFHR 31 1 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ; 156.27 1.6438e-09 108657000.0 29323.0 40538.0 34346.0 40727.0 37589.0 34208.0 37279.0 30264.0 33439.0 33618.0 False True 29165.128226091572 41887.28282426149 39181.61825921628 45883.034024166605 42375.736342541786 31843.281476970376 35475.672350390516 32522.453357478116 25198.4065096436 31472.470458182153 0.9266869680549427 1.3309181711654197 1.2449489248477448 1.4578783729460303 1.3464381958463327 1.0117820753626865 1.1271969385920138 1.0333619472513633 0.800649143292549 1.0 14.941802808197869 2.1147926672699358 1.204317210814348 0.9336489659595555 1.2639930807874866 0.4235795324952686 0.1514495893061598 0.4578589771839598 1.2481832688181247 0.1073844900722401 0.054721571548458706 130.25447934787164 -2.1147926672699358 0.33034411482793113 GDHWTTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDHWTTR 7 0 O75821;K7ENA8;K7ER90;K7EL20 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 ;; 111.82 0.006494 572670000.0 457270.0 495399.0 551191.0 563324.0 614147.0 483271.0 562698.0 519635.0 592160.0 582789.0 False True 454808.109127473 511888.05623998074 628793.9017619425 634640.7606410892 692354.9801155401 449863.61326756765 535478.1480248941 558412.8023530645 446230.1025374726 545594.9070692341 0.833600356664912 0.9382200046361943 1.152492249496293 1.1632087331059993 1.26899091458653 0.824537779657979 0.9814573799842009 1.0234934291316689 0.8178780570634021 1.0 19.057470651826293 2.715009417307908 24.99899313210865 0.9429455490472044 1.0735254803690393 0.22578209689562334 0.13009452633627702 1430.6957204406597 1518644.6415335846 0.04501082613816816 0.042455283902843664 518.811288790252 -2.715009417307908 0.13057993132183487 GDIDHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDIDHVK 7 0 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 104.21 0.0082028 234000000.0 562310.0 562170.0 611650.0 428530.0 573570.0 1042100.0 584900.0 492550.0 740990.0 669590.0 False True 559282.5854385135 580881.4886110594 697765.0034428944 482781.85406182875 646610.7396842618 970062.0798395362 556606.1524650176 529306.5821182216 558382.9432572994 626856.1929351591 0.8922023771030444 0.9266582912600255 1.113118146246136 0.7701636507749503 1.0315136820402222 1.5475033839856756 0.8879327647044432 0.8443827915934334 0.8907672119226515 1.0 19.25777498678584 GDIFDGTSFSHLPPSSSDGQGVPLS(ph)PVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDIFDGTSFSHLPPSSSDGQGVPLSPVSK 29 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 GDIFDGTSFSHLPPSSSDGQGVPLS(0.999)PVS(0.001)K;GDIFDGTSFSHLPPSSSDGQGVPLS(0.993)PVS(0.006)K 159.91 4.5433e-12 478190000.0 428680.0 558620.0 584830.0 571390.0 572870.0 693970.0 618030.0 612070.0 754330.0 646120.0 True False 426372.03451082524 577213.3290070783 667168.9805665136 643727.9154140633 645821.5988334856 645997.4873296636 588133.5277961271 657745.7714284842 568435.4790041408 604884.0684288383 0.7048822357287557 0.9542544747564048 1.102969999357824 1.0642170111805396 1.0676783081938013 1.0679690887009403 0.9723078495417808 1.0873914618663243 0.9397428510237157 1.0 19.20629913760149 4.684922528894388 2.966174854505694 1.0425736662669234 0.6686242507190017 0.7967738003239118 0.050401681094086104 0.12739178332836557 1.7243161518808878 0.011660599273188922 0.10556967024429798 48408.600677397364 -4.684922528894388 -0.3739494155479217 GDIFLVR ddPTM_BT-474_Trastuzumab_2h_R1 5 GDIFLVR 7 0 P55072;C9IZA5;C9JUP7 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;; 167.25 0.0025430999999999995 1846830000.0 1268130.0 1625430.0 1433130.0 1488370.0 1573930.0 1341040.0 1229560.0 1304350.0 1561850.0 1426530.0 False True 1261302.5289824868 1679531.4549568142 1634902.247010733 1676797.4893939868 1774360.6560860018 1248337.061268602 1170081.4854246662 1401687.2203550963 1176952.995217766 1335487.6340862205 0.9444509232356215 1.2576166278813943 1.2241987160962224 1.2555694613685437 1.3286238006240103 0.934742508583953 0.8761455033803215 1.0495695988335911 0.8812908223018264 1.0 20.348935186761008 2.7239496768746028 24.668769478385123 0.9535215108512712 1.2093757433833063 0.5890253881947073 0.10584351411124639 472.0514237346317 796999.2949021693 0.03382977875951731 0.032022259294539314 529.6020736076367 -2.7239496768746028 0.2558542325320351 GDILLDENCCVESLPDKDGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDILLDENCCVESLPDKDGKK 21 2 Q9UH65;E7EMB1;E9PJM7 Q9UH65 SWAP70 Switch-associated protein 70 0 139.17 2.3865e-07 145060000.0 73343.0 52403.0 44194.0 39489.0 37777.0 70733.0 63512.0 54248.0 115800.0 65622.0 False True 72948.12943717341 54147.202176717576 50416.13105886578 44488.30335110163 42587.67702817846 65843.39419757217 60439.68192059879 58296.26122576241 87262.64164050148 61433.94777817922 1.1874237628447495 0.8813889410497915 0.8206558894913332 0.724164813756336 0.6932270929739146 1.0717754039723155 0.983815693219481 0.9489258518149262 1.4204303124972928 1.0 15.906748474181281 1.3871089778688213 6.889998672689381 1.2102835407389991 0.9027564569582597 0.32889795126551113 0.16970592560479222 0.24172809558893793 14.819020663559927 0.11537345607567218 0.04222255462780019 24.38422616983534 -1.3871089778688213 -0.30752708378073945 GDIYFCTGYDPPMKPYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDIYFCTGYDPPMKPYGR 18 1 Q9NRV9;A0A3B3IRV5 Q9NRV9 HEBP1 Heme-binding protein 1 0 ; 83.751 0.0035991 1295070000.0 1158540.0 1343760.0 1270660.0 1311920.0 1218340.0 1402420.0 1264720.0 1208960.0 1682090.0 1420960.0 False True 1152302.5493658942 1388486.2392799268 1449557.883225288 1478008.9374858113 1373488.3773330592 1305474.006341581 1203540.6619004242 1299178.7341744886 1267561.4583512205 1330273.1162549402 0.8662150165147449 1.0437602792341407 1.0896693810562488 1.1110567592666876 1.0324860064824741 0.9813578808664682 0.9047320036720727 0.9766255653064762 0.9528580581405199 1.0 20.343291042881958 2.6463382631201307 3.87157515353737 0.9558347342966276 1.0375699075840872 0.19891246765042891 0.06532228790422687 0.3461456145473192 9.553493340713826 0.02246707678263933 0.02120339363387098 442.9332297087342 -2.6463382631201307 0.0817351732874596 GDKEEVAYEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GDKEEVAYEER 11 1 Q9NRV9;F5GWX2 Q9NRV9 HEBP1 Heme-binding protein 1 0 ; 138.42 5.2797e-05 4262200000.0 6707700.0 6568500.0 5974900.0 5916200.0 5847300.0 6979400.0 6680500.0 6406800.0 9087400.0 7092600.0 False True 6671586.48849553 6787128.551757893 6816113.985238208 6665190.313398341 6591918.995337585 6496930.505740382 6357338.693011716 6884907.949071197 6847932.03492135 6639944.19571964 1.004765445588577 1.0221665049735107 1.0265318177872842 1.0038021581107528 0.9927672283130009 0.9784616126636351 0.9574385726178087 1.0368924415824865 1.0313237330120617 1.0 22.662739686062512 -2.02258891503802 4.276397539068031 0.9925550932533277 1.005960189685513 0.005803189738437964 0.023614842536150198 0.004043618896950849 2.13593651454397e-05 0.055159101564964015 0.005762478805273396 0.009493166214970546 2.02258891503802 0.013405096432185348 GDKHDDLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDKHDDLQR 9 1 Q9BY42;A2A2L6;A2A2L5;A0A0A0MQR2 Q9BY42 RTFDC1 Protein RTF2 homolog 0 ;; 128.03 0.00025757 645147000.0 745804.0 823236.0 814312.0 745034.0 699901.0 735335.0 858208.0 748937.0 1160720.0 878253.0 False True 741788.674130614 850636.9126033295 928960.0514732125 839355.2280099436 789029.24371176 684503.0222424009 816693.2003670679 804826.4819650279 874676.1088511483 822202.1416297767 0.9021974482579597 1.0345836741767531 1.1298438722524116 1.0208623713216873 0.9596535982595946 0.8325240078863972 0.9932997726668665 0.9788669248290857 1.0638212485281993 1.0 19.649133604201268 5.988178306315085 12.52559304702213 0.9910932563803259 0.6948592124462242 0.0 0.07847771418871631 0.0 0.0 0.01812809739711878 0.0 973146.682187678 -5.988178306315085 -0.2962340439341017 GDKLS(ph)DPCSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDKLSDPCSSR 11 1 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 GDKLS(1)DPCSSR 56.147 0.07318 218190000.0 389540.0 371540.0 337990.0 347640.0 342040.0 432570.0 404260.0 376860.0 547620.0 427430.0 True False 387442.75992196286 383906.4842993271 385576.0541382555 391651.1883556681 385596.76657008636 402667.45406025153 384704.39937683084 404983.20685630455 412666.3887320503 400151.0514587659 0.9682412641664329 0.9594039123470532 0.9635762613458674 0.9787583636926325 0.963628022878807 1.0062886317362205 0.9613979470361912 1.0120758283151394 1.0312765322686501 1.0 18.610185174572297 1.971610684846071 0.948340506060276 1.0173795648396768 0.9669947051964024 0.5681743821632154 0.016093388797649953 0.3851199809520494 0.6375822282417941 0.012817751732388874 0.006028168067642491 93.67219236201181 -1.971610684846071 -0.05038485964327444 GDKSELNEIKENQRS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDKSELNEIKENQRSPVR 18 3 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR 232.82 2.659e-21 2424440000.0 1646840.0 1764250.0 1659780.0 1845120.0 1744900.0 2136390.0 2340160.0 2037790.0 3568990.0 2538040.0 True False 1637973.5964211246 1822971.994738352 1893462.5969336156 2078712.002815585 1967102.6721674218 1988706.387821119 2226957.5205206643 2189860.2374879504 2689460.236515836 2376060.114274633 0.6893653854044713 0.7672246942686766 0.7968917055415723 0.8748566546474675 0.8278842190690708 0.8369764619479058 0.9372479707654673 0.9216350311728009 1.1318990712223111 1.0 21.180139906081035 2.6095794421701046 0.42712650178681594 1.0521529060911106 0.7100116421168444 0.7635144594631958 0.05823375637510713 0.6239470135375736 0.23737346692942185 0.058355313805921356 0.08150171567818325 406.98597383406883 -2.6095794421701046 -0.34214126397426614 GDKVDILYNNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDKVDILYNNIK 12 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ; 196.11 1.9189e-07 1661580000.0 2835800.0 2828900.0 2744000.0 2378400.0 2427600.0 2986700.0 3102700.0 2964700.0 4539500.0 3134200.0 False True 2820532.367887 2923058.226393834 3130331.348724434 2679505.196137154 2736740.470487497 2780236.458935558 2952610.547534983 3185940.9684415623 3420801.0511835613 2934172.672676377 0.9612700691245546 0.9962120680946821 1.0668531466722213 0.9132063770783706 0.9327128208822167 0.9475367570646728 1.0062838411080246 1.0858055485655986 1.1658485824773601 1.0 21.48452234377233 1.8132243754349822 3.1835805860507795 1.0955241808607457 0.9714623803753444 0.46418167855128467 0.05435096004521079 0.20333132409007781 3.7434489400210746 0.029712564346919663 0.015070752230022393 65.04656624238812 -1.8132243754349822 -0.12406180048540127 GDLAFGAPGPRPPS(ph)PFDDPADDPEHK ddPTM_BT-474_Trastuzumab_2h_R1 6 GDLAFGAPGPRPPSPFDDPADDPEHK 26 1 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 1 GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK 199.59 3.4267e-25 4303060000.0 1965541.0 1766726.0 1695395.0 1656085.0 1541490.0 1986997.0 1971416.0 1893236.0 2700944.0 1956706.0 True False 1954958.7456481343 1825530.406901578 1934091.8793624886 1865745.1911977804 1737789.6143729477 1849640.5742778226 1876051.0765395372 2034518.8839776118 2035332.5419953605 1831827.3478597119 1.067217796443692 0.9965624811937156 1.0558265120467065 1.0185158516045183 0.9486645214699754 1.0097242933068575 1.0241418650788765 1.11064991269768 1.111094091030698 1.0 20.804852103258764 1.8453413293023886 6.192301351000514 1.0841401646573914 1.01444430587371 0.2667078666799897 0.04209419071053405 0.25003176531078875 12.04702615530182 0.018348497395164517 0.011030428015333466 70.0392245858383 -1.8453413293023886 -0.06969585878368134 GDLEEYGQDLLHTVFK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDLEEYGQDLLHTVFK 16 0 P43490 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ;; 187.89 1.2673000000000002e-09 513554000.0 333367.0 336232.0 307858.0 275976.0 279445.0 362606.0 324405.0 309903.0 385919.0 339574.0 False True 331572.1891125553 347423.27886346355 351201.7304502939 310914.5333035435 315030.6643497188 337539.9007027105 308712.29080255475 333029.5355155482 290814.43349966046 317902.09659607214 1.043000951119402 1.0928624962952074 1.1047480787663142 0.9780197634197831 0.9909675580088991 1.0617731191989912 0.9710923397740469 1.0475852128106504 0.9147924364562169 1.0 18.278223005661935 3.7383499288252353 24.999996797874882 1.0008089802790092 1.0814697094714012 0.46998610220993464 0.04117638734223952 16.632400262479194 1973625.2181576705 0.010314548565980313 0.017133746117674646 5474.568936404785 -3.7383499288252353 0.08066072919239198 GDLGIEIPAEK ddPTM_BT-474_Trastuzumab_2h_R1 6 GDLGIEIPAEK 11 0 P14618;P14618-3;B4DNK4;P30613;P30613-2;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase;Pyruvate kinase PKLR 0 ;;;;; 201.33 1.0189e-07 3403170000.0 6508990.0 6291710.0 5915560.0 5512900.0 5381190.0 7707900.0 7528140.0 6642880.0 9240480.0 7429400.0 False True 6473946.321056781 6501125.763930997 6748419.4290307285 6210832.574749634 6066452.649688001 7175071.015444931 7163975.1079124585 7138605.437461144 6963287.520088265 6955249.331370652 0.930800034997592 0.9347077946736725 0.9702627623416681 0.8929705146207436 0.8722121035008966 1.031605147939529 1.0300098194324077 1.026362262135376 1.0011557010158296 1.0 22.72967080266602 2.7238538046396337 24.997165570658797 1.0210177378158525 0.922266705441429 0.7736171260835217 0.026367997755471852 389.760358865067 662474.6683261492 0.009056087949412124 0.00857031244437284 529.4851747459822 -2.7238538046396337 -0.09875103237442351 GDLLEGANAYHCEK ddPTM_BT-474_Trastuzumab_2h_R1 4 GDLLEGANAYHCEK 14 0 Q93008;Q93008-3;O00507;O00507-2 Q93008 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y 0 ;;; 200.44 1.924e-08 1739390000.0 972280.0 1099510.0 978880.0 993450.0 961660.0 1085510.0 1123230.0 1000500.0 1380230.0 1148830.0 False True 967045.3525104631 1136106.5256821692 1116697.7954225133 1119220.668139278 1084121.7007946146 1010471.2487156846 1068895.073744712 1075162.390436058 1040090.8106344496 1075510.6858371522 0.8991499250030582 1.0563414577307064 1.0382953978307543 1.0406411418107882 1.0080064429585465 0.9395269261589508 0.9938488643771207 0.9996761581212713 0.9670669239560994 1.0 20.03659042818806 2.977586780979095 24.418702496403927 0.9818926823001332 1.015410517910022 0.0869069135788405 0.04376517687735691 1248.7729900826214 1360512.1809438146 0.013020734884967659 0.013918687753073712 949.7007500065764 -2.977586780979095 0.033517835609888746 GDLS(ph)DVEEEEEEEMDVDEATGAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDLSDVEEEEEEEMDVDEATGAVK 24 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 GDLS(1)DVEEEEEEEMDVDEATGAVK;GDLS(1)DVEEEEEEEMDVDEATGAVK 140.64 1.8805e-07 357160000.0 192886.0 182945.0 172190.0 156106.0 154418.0 212436.0 189548.0 195968.0 249380.0 212841.0 True False 191847.523207649 189034.21373241235 196432.85529769 175869.00359409142 174082.21699280667 197750.79934055457 180378.83909632283 210592.12726534056 187923.64052079685 199257.30515765218 0.9628129972743505 0.9486940194380761 0.9858251126214546 0.8826226142873108 0.8736553816939008 0.9924393948020843 0.9052558396973565 1.0568853528291988 0.9431204560962613 1.0 17.60427309160876 1.7504588159865353 24.99999999999988 1.0037977330865258 0.9360441708372833 0.2927269022478546 0.045545307983165834 3.980182928899487 8377.152706679577 0.020774905691097453 0.0115206159231728 56.29357318389939 -1.7504588159865353 -0.06775356224924245 GDLS(ph)DVEEEEEEEMDVDEATGAVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDLSDVEEEEEEEMDVDEATGAVKK 25 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK 200.06 4.191200000000001e-25 984910000.0 132955.0 202810.0 189405.0 201943.0 177480.0 200748.0 228013.0 189394.0 281968.0 212809.0 True False 132239.18505268934 209560.40824876612 216071.5776622272 227508.96309431782 200081.02599362345 186870.76326996193 216983.14009575316 203527.5420032453 212480.7645776245 199227.3474250487 0.6637602054227973 1.0518656748547275 1.0845477814912707 1.141956493597893 1.0042849467184514 0.9379774698865805 1.0891232699736886 1.0215843589435651 1.0665240857938032 1.0 17.604056170469818 4.739133235394392 24.940012224246935 1.04558838081948 0.6637600849133308 0.817288178471327 0.05396130053122954 18.523748585294857 806590.4605164401 0.01317904412794491 0.07816763405307868 54844.519433012414 -4.739133235394392 -0.3818282959061491 GDLSGHFEHLMVALVTPPAVFDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDLSGHFEHLMVALVTPPAVFDAK 24 0 P12429;D6RA82;D6RFG5;D6RCA8;D6RAZ8 P12429 ANXA3 Annexin A3;Annexin 0 ; 186.3 1.2482e-17 315240000.0 269400.0 258080.0 252290.0 224620.0 224840.0 307980.0 297110.0 97078.0 357090.0 249730.0 False True 267949.58033315407 266670.0367873454 287810.2390560086 253056.8689691926 253472.0412689107 286690.0675069384 282737.6542295802 104322.45331209569 269089.95426085184 233792.0175953906 1.1461023481001729 1.1406293488123054 1.2310524628522774 1.082401664402172 1.0841774833714772 1.2262611463625555 1.209355465330287 0.44621905565929165 1.1509800763452465 1.0 17.834866146940506 1.786371492173926 24.9999999988779 0.8065778769871532 1.1586332640534016 0.3558703643803237 0.17609955644347167 86.02460905787673 44995.642878686995 0.07572425037791104 0.04244355880326155 61.14648436106677 -1.786371492173926 0.3520553870662484 GDLSSIR ddPTM_BT-474_Trastuzumab_2h_R1 5 GDLSSIR 7 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 149.4 0.004697 1214130000.0 1505690.0 1983830.0 1965990.0 1794410.0 1571250.0 1737230.0 1865340.0 1360020.0 2073080.0 1757680.0 False True 1497583.5323378872 2049860.5822994402 2242784.3033085815 2021582.1220149994 1771339.3739716094 1617139.3790995448 1775106.3779092073 1461511.5984416255 1562197.2118487984 1645503.357574445 0.9101066402838588 1.245734670101821 1.3629776523911556 1.2285493753078167 1.076472658544224 0.9827627343667593 1.0787619300429772 0.8881851208106724 0.9493734574638341 1.0 20.650097539542777 2.9894233439320073 2.7753409713748503 0.9737778489668282 1.202947607176294 0.4096984895705251 0.11591216767372502 0.2568414879172498 3.9968327912874546 0.03800880807492397 0.043795032264561246 975.9405067791167 -2.9894233439320073 0.22916975820946572 GDLSYLDQGHR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDLSYLDQGHR 11 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 0 ;; 161.99 0.00014726 466560000.0 484063.0 641640.0 584363.0 618607.0 545734.0 578610.0 567595.0 479422.0 615125.0 594831.0 False True 481456.85859245487 662996.5995204295 666636.2310257498 696922.5827727946 615229.9900811596 538612.0526014335 540138.2614265375 515198.9040955885 463535.68600270664 556868.376319559 0.8645792777361283 1.1905804454228313 1.1971163373141527 1.2515032499760148 1.104803246590016 0.9672160882275542 0.9699567876279961 0.9251717748826546 0.8323972157770844 1.0 19.08697684101255 2.709676925835301 2.9503491680666203 0.9305154756059018 1.1400864903094527 0.43165416151805036 0.10506355368961286 0.2427847624133687 4.2599707324577185 0.036021906956887145 0.03529318551141641 512.4800053284841 -2.709676925835301 0.209571014703551 GDMEQNDSDNRR ddPTM_BT-474_Trastuzumab_2h_R1 14 GDMEQNDSDNRR 12 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ;;;;;;;;;;;;; 203.7 1.9564e-07 5876936000.0 2349253.6 3133106.0 2803042.0 3003628.0 3051265.0 2920921.0 2932177.0 2613547.0 3114736.0 2941917.1 False True 2336605.4796442143 3237389.539207428 3197685.949122177 3383886.996831086 3439825.511485428 2719004.6063784435 2790336.3965060986 2808583.148462756 2347151.048124085 2754161.4319760543 0.8483908940543647 1.1754538066000975 1.1610379522408398 1.2286451177276185 1.2489556608950927 0.9872350163685262 1.0131346565637183 1.0197598135878532 0.8522198520658437 1.0 21.39318169317093 2.663948377523865 10.337102264947266 0.9823487142306477 1.1417610669517573 0.3283029853055639 0.11235014513557322 0.7420532620305302 100.21056678230893 0.036649339281515286 0.03454593211088984 461.2627432392751 -2.663948377523865 0.15941235272110954 GDMS(ph)DEDDENEFFDAPEIITMPENLGHK ddPTM_BT-474_Trastuzumab_2h_R1 38 GDMSDEDDENEFFDAPEIITMPENLGHK 28 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK 320.36 2.8708e-83 25596791000.0 6770252.0 6578507.0 6115998.0 5895868.0 6136126.0 7541539.0 7405449.0 7057289.0 8990402.0 7714922.0 True False 6733801.7154777115 6797468.62870354 6977077.3571924055 6642284.284283029 6917525.27443177 7020210.159803263 7047219.140307606 7583939.741367418 6774837.892314752 7222549.072882975 0.9323303514488723 0.9411453712685183 0.9660131467140608 0.9196592805747007 0.957767846867747 0.9719851106530528 0.9757246464086143 1.0500364434824379 0.9380120264950289 1.0 22.784076670393663 2.4593522904628977 1.7666203215758378 1.0016784867043997 0.9424572525512905 0.380514375648611 0.02847979785104758 0.3201725072035235 2.029337205691266 0.012453947747985675 0.009694481567964822 287.97334461734863 -2.4593522904628977 -0.0592212341531092 GDMS(ph)DEDDENEFFDAPEIITMPENLGHKR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDMSDEDDENEFFDAPEIITMPENLGHKR 29 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR 129.23 7.5759000000000014e-06 319173000.0 85298.0 136756.0 112975.0 143208.0 128244.0 139573.0 153873.0 106100.0 232806.0 162040.0 True False 84838.76504549873 141307.84078925216 128880.89800369645 161338.11811655312 144575.1132382592 129924.64702950158 146429.57513805735 114017.7207648833 175434.08074057504 151698.46847057648 0.559259206113568 0.9315047291770141 0.8495860195760266 1.0635448053178358 0.9530426687616893 0.8564664385830753 0.9652673267855628 0.7516075931049906 1.1564657343564568 1.0 17.210846994820322 4.7386722538386135 24.07838697727051 0.9303534129283512 0.5592591060532383 0.5269931121814087 0.10926353947264172 4.257002304720467 916190.4443728552 0.025017269974146706 0.14459356667252352 54786.33564356146 -4.7386722538386135 -0.3710943068751129 GDMVTLPAGIYHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDMVTLPAGIYHR 13 0 Q9BV57;Q9BV57-2;A0A0G2JQN5 Q9BV57 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 0 ; 176.51 1.6441e-05 495980000.0 563140.0 675850.0 606000.0 627200.0 571100.0 768630.0 641260.0 534190.0 571870.0 650290.0 False True 560108.1168107361 698345.2586900478 691319.5325535749 706603.455691736 643826.1998250982 715496.4172604004 610239.8039489103 574053.9703618576 430940.3011654018 608787.935458721 0.9200381350998609 1.147107585441629 1.1355670707118504 1.1606725668098383 1.0575541372053896 1.1752802176036465 1.002384850956508 0.9429457072425532 0.7078660335814454 1.0 19.21558024322187 1.748020038269241 2.321471088282364 0.8534639932397723 1.1021923432527245 0.49157929566138026 0.09793457968603127 0.20248243756326953 2.232799563811372 0.059270441590714915 0.025937684017289523 55.97834292059497 -1.748020038269241 0.24872835001295224 GDNIYEWR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDNIYEWR 8 0 R4GN77;R4GND1;A0A1B0GX65;Q969T4;A0A087X283;H7C061;B7Z306;P51965-2;C9J180;Q96LR5;C9J2P0;P51965-3;P51965 R4GN77;C9J180;C9J2P0 UBE2E3;UBE2E2;UBE2E1 Ubiquitin-conjugating enzyme E2 E3;Ubiquitin-conjugating enzyme E2 E1;Ubiquitin-conjugating enzyme E2 E2 0 ;; 91.087 0.029629000000000006 1721300000.0 1222460.0 1457380.0 1317910.0 1281770.0 1263340.0 1373600.0 1388880.0 1275400.0 1537350.0 1435910.0 False True 1215878.4111880742 1505888.0122951847 1503460.272520928 1444041.9505771615 1424218.8605971623 1278646.2651065984 1321694.568363162 1370576.8243499743 1158490.6919345856 1344268.9944556013 0.9044904079488031 1.120228182384758 1.1184221898458615 1.074220975513882 1.0594746040199632 0.9511833348684958 0.9832069130616365 1.019570361291437 0.8617997563826488 1.0 20.358390426292434 2.7485881256581397 22.339518167156076 0.9706120828126823 1.0635211620081373 0.30393630561925644 0.06876644732404588 205.3867834366769 457563.6113001039 0.020791860070515367 0.021762120019956976 560.5161439825472 -2.7485881256581397 0.09290907919545499 GDNRLDLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDNRLDLLK 9 1 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 103.7 0.0030824000000000003 485290000.0 619760.0 806760.0 858770.0 687580.0 500410.0 574260.0 675790.0 495330.0 1236200.0 695960.0 False True 616423.281021809 833612.5189032812 979677.3514373476 774627.5575008345 564134.2473375543 534562.7578626347 643099.4559315005 532294.0398347757 931555.0742313291 651543.2369586666 0.9460972749854732 1.2794431307344918 1.5036260003409376 1.1889119763052292 0.8658431479864207 0.8204563067186699 0.9870403366220472 0.816974238454944 1.4297670843453576 1.0 19.313501394866577 3.3658168056813196 5.679586330175281 0.9603482413093354 1.2617862139049443 0.24222973066622666 0.20758639180256364 0.2517347567032482 11.612722974710595 0.057511526966941166 0.07825323783797206 2321.7572249594855 -3.3658168056813196 0.3014379725956089 GDPPRLS(ph)PDPVAGSAVSQELR ddPTM_BT-474_Trastuzumab_2h_R1 5 GDPPRLSPDPVAGSAVSQELR 21 1 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 GDPPRLS(1)PDPVAGSAVSQELR;GDPPRLS(1)PDPVAGSAVSQELR;GDPPRLS(1)PDPVAGSAVSQELR;GDPPRLS(1)PDPVAGSAVSQELR;GDPPRLS(0.999)PDPVAGSAVSQELR 133.44 5.989e-06 4058990000.0 649996.0 788643.0 745831.0 887400.0 829274.0 776830.0 757911.0 653315.0 775795.0 740971.0 True False 646496.4937573448 814892.5055102392 850837.5219207337 999744.7490128274 934877.1284079128 723129.5705611232 721247.949428816 702068.6827663501 584610.7173704052 693681.5964028107 0.9319787307459917 1.1747356564394755 1.2265534019251463 1.4412156156328102 1.3477035188130368 1.04245171604814 1.0397392019176446 1.0120906859963301 0.8427652115927412 1.0 19.403914084360323 2.5719660660282457 5.048225148088786 0.9871358607314441 1.2332011855642262 0.44870443695799933 0.1324278216325579 0.22897129391273485 9.339789298081406 0.047062272034644026 0.04387325626665141 373.22099471393244 -2.5719660660282457 0.2460653248327821 GDQCCYSHS(ph)PPTPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 GDQCCYSHS(0.999)PPT(0.001)PR;GDQCCYSHS(1)PPTPR;GDQCCYSHS(0.984)PPT(0.015)PR;GDQCCYS(0.001)HS(0.992)PPT(0.007)PR 184.01 8.645200000000002e-07 1398120000.0 267116.0 334279.0 347261.0 334568.0 342773.0 324097.0 347709.0 317493.0 362304.0 339294.0 True False 265677.87713537726 345405.27443907724 396152.33035327843 376924.27449596993 386423.1097752552 301692.93723227526 330888.98729262914 341185.939856787 273019.03382487246 317639.9664357925 0.8364119922203844 1.0874112546819488 1.2471740719483937 1.1866399519097075 1.2165443603060149 0.9497952685788966 1.0417108117895322 1.0741278677403274 0.8595235570901003 1.0 18.27703292265801 2.7266849226721606 24.860658161408594 1.0012976896103813 1.1246539013355283 0.2218003928133101 0.11893665831438206 1196.791413472563 2505366.41162204 0.03994345323376731 0.0379400396805853 532.9481054201551 -2.7266849226721606 0.12335621172514699 GDQENVHPDVMLVQPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GDQENVHPDVMLVQPR 16 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ;;;;; 198.07 4.1679e-11 3865760000.0 3881922.0 4291964.0 4087056.0 4273178.0 4043909.0 4121970.0 4146494.0 3645521.0 4245309.0 4240004.0 False True 3861022.1632740786 4434819.427192969 4662477.959472412 4814161.896661192 4558876.841023488 3837027.915973683 3945912.244074686 3917568.288600552 3199109.481176132 3969403.3146699476 0.9726958580914873 1.1172509003564735 1.1746042389396485 1.2128175231952931 1.1485043165492883 0.9666510585590944 0.9940819642820259 0.9869413556748375 0.8059421599596601 1.0 21.920490725391588 2.7232805661489756 8.882474392319304 0.9564789227525344 1.132386606089199 0.5526615189687536 0.078256309263792 0.1941346001777472 101.25593588074193 0.025789462328662766 0.024963616217637832 528.7867522017035 -2.7232805661489756 0.1759076833366645 GDQLLSVNGVSVEGEHHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDQLLSVNGVSVEGEHHEK 19 0 Q9NUP9;G3V1D4;O14910 Q9NUP9 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A 0 ; 161.58 1.6927e-11 187668000.0 187063.0 207499.0 187001.0 193492.0 186344.0 231012.0 221271.0 157515.0 262113.0 222931.0 False True 186055.873592653 214405.47877920556 213329.11535816983 217988.0673608182 210073.80385257956 215042.68418375487 210567.27639269462 169269.56914496302 197518.76328425555 208703.35271916832 0.8914848332264703 1.0273216792435051 1.0221642948171799 1.0444876161340035 1.006566502720516 1.030374842483325 1.008930971396681 0.8110534255419103 0.9464091530433496 1.0 17.67109425132395 1.777286629740834 24.99999999999733 0.8993471641629928 1.0086503165057943 0.2789357371748794 0.06013426244557912 47.668490217039924 30785.180905380126 0.026403538361494103 0.014662775312005168 59.880667070954196 -1.777286629740834 0.10930315234280152 GDQPAASGDS(ph)DDDEPPPLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDQPAASGDSDDDEPPPLPR 20 0 O00264;O00264-2 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 1 GDQPAASGDS(1)DDDEPPPLPR;GDQPAASGDS(1)DDDEPPPLPR 345.84 6.049499999999997e-95 411750000.0 373671.0 644910.0 517770.0 447130.0 505740.0 551530.0 472800.0 427830.0 631540.0 493660.0 True False 371659.1968547509 666375.4394936728 590667.5154624827 503736.6121547285 570142.9912441697 513404.02926197 449928.8577286044 459756.8470767199 475905.4292024382 462154.19615641044 0.8041887316954435 1.4418898390098056 1.2780745482241136 1.0899751994986646 1.2336639935023153 1.1108933631497628 0.9735470573901951 0.9948126640423727 1.0297546428451638 1.0 18.818014756629815 2.4194244391038207 3.879888135228887 0.9983911963547966 1.1858646312372862 0.21220929234384656 0.1527020478223475 0.31210126553756695 9.683127128227524 0.05272985624805669 0.044118306382153305 262.678446458116 -2.4194244391038207 0.1874734348824897 GDQVLNFS(ph)DAEDLIDDSK ddPTM_BT-474_Trastuzumab_2h_R1 6 GDQVLNFSDAEDLIDDSK 18 0 F8W126;Q96EZ8-4;Q96EZ8-3;Q96EZ8;Q96EZ8-2 F8W126 MCRS1 Microspherule protein 1 1 GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK 262.98 7.5561e-31 907544000.0 990372.0 841707.0 774230.0 679588.0 721772.0 961495.0 883502.0 892533.0 1330870.0 977729.0 True False 985039.9471926737 869722.7086723748 883234.8542722005 765623.7711202727 813685.385922186 895029.1137657758 840763.632954605 959138.3446507412 1002894.9212443373 915329.4981440901 1.0761588577555161 0.9501744567784749 0.9649365130950502 0.8364460805345412 0.8889535271964945 0.9778217741048715 0.9185365867256832 1.0478612855758254 1.0956654661275462 1.0 19.803931649273654 1.675634338323167 5.475257304772752 1.0554939344377274 0.9407815226407557 0.3595252759866143 0.06262677160157246 0.15099569111713318 10.0300991568753 0.03384833833523071 0.016656722631075312 47.38428571487665 -1.675634338323167 -0.11471241179697178 GDQVLNFS(ph)DAEDLIDDSKLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDQVLNFSDAEDLIDDSKLK 20 1 F8W126;Q96EZ8-4;Q96EZ8-3;Q96EZ8;Q96EZ8-2 F8W126 MCRS1 Microspherule protein 1 1 GDQVLNFS(1)DAEDLIDDSKLK;GDQVLNFS(1)DAEDLIDDSKLK 169.26 6.684999999999998e-12 92888000.0 77935.0 88140.0 76198.0 84530.0 80650.0 107609.0 109099.0 94394.0 210781.0 117614.0 True False 77515.40661939248 91073.68661824486 86926.01607511111 95231.48933294383 90920.29944999845 100170.24311433887 103821.4645713471 101438.15960301977 158836.84687069542 110107.77382558862 0.7039957663859171 0.8271322128672416 0.7894630238624427 0.8648934223644471 0.8257391489361755 0.9097472379471511 0.9429076709497454 0.921262469293934 1.4425579716314485 1.0 16.748556804044874 1.40354315519425 5.349512341760192 1.22135376539736 0.8467965214675706 0.6206679322028601 0.11754897596170907 0.12203440773085458 5.496621840227693 0.0766346170470695 0.027952938404124814 25.324632698724187 -1.40354315519425 -0.3745572439297895 GDRDESDDGGVAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDRDESDDGGVAQR 14 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 0 ; 115.83 0.00036187 178591000.0 102074.0 120999.0 112822.0 122031.0 117213.0 103080.0 108109.0 101902.0 108605.0 107578.0 False True 101524.44492548761 125026.37856956002 128706.35693359638 137480.1120878797 132139.3807741188 95954.32222421975 102879.35465351447 109506.44468787123 81840.75298244103 100712.27993784047 1.0080642101256014 1.2414213901892222 1.2779609101594545 1.3650779445439256 1.3120483505653442 0.9527569258033148 1.0215174824461477 1.0873196868888135 0.8126194048327877 1.0 16.619880077595855 2.735581708366265 24.96871875179 0.9929564344262365 1.2498988176065418 0.5923776817906383 0.10971752348837335 196.3271518122627 1645572.7689347174 0.035935064652700764 0.035223924518045964 543.9784664557 -2.735581708366265 0.25694238318030527 GDREREREK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDREREREK 9 3 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 50.607 0.093915 170160000.0 248610.0 182380.0 187850.0 191820.0 171490.0 239460.0 206130.0 209550.0 228740.0 243730.0 False True 247271.51138316773 188450.4080489619 214297.64717852973 216104.39233225252 193328.23499913522 222906.6938282076 196158.70440693112 225187.68507333947 172370.09195896663 228174.94273224872 1.0836926632795427 0.8259031679481937 0.9391813343413292 0.947099579579339 0.8472807429429082 0.9769113609016081 0.8596855643220782 0.9869080380906915 0.7554295396985543 1.0 17.799780843711194 4.756931620212234 24.10701536628959 0.9083079273924421 1.0836929107148718 0.3320053697944796 0.07615812933390728 2689.4725355089604 3529117.920812259 0.016318350291921316 0.5180404796766843 57138.86642838 -4.756931620212234 0.1753849833224297 GDRS(ph)PEPGQTWTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDRSPEPGQTWTR 13 1 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GDRS(0.696)PEPGQT(0.005)WT(0.299)R 134.13 0.0002609 360970000.0 363510.0 401250.0 325120.0 360940.0 366960.0 421870.0 353160.0 331210.0 409210.0 390530.0 True False 361552.90254975733 414605.3636892526 370894.0700063008 406634.96699198766 413690.180857675 392707.1198751611 336076.3015977874 355926.5720503016 308365.67863307055 365606.0410504458 0.9889139181370112 1.1340221909299522 1.0144637351742374 1.1122216849143385 1.131518996975749 1.0741264524701217 0.9192307124690428 0.9735248658027271 0.8434370442760892 1.0 18.479930383239566 2.2441866629203475 24.21353390413287 0.9358575167467507 1.079910377900629 0.5891931710286995 0.05795145787395098 60.13300123316585 258803.23593631608 0.019346861791071174 0.015752921292182122 175.46344944349158 -2.2441866629203475 0.14405286115387828 GDRSPEPGQTWT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 GDRSPEPGQTWTR 13 1 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GDRS(0.039)PEPGQT(0.204)WT(0.757)R 153.2 0.00029041 435840000.0 325200.0 349250.0 341430.0 328920.0 363830.0 403240.0 331080.0 299360.0 311450.0 310380.0 True False 323449.15933311696 360874.5751239164 389500.37623723946 370561.23827507225 410161.5939106378 375364.96792485774 315064.39555157855 321699.76331927895 234697.32071618474 290571.2826703131 1.1131490915435978 1.2419485222611297 1.3404641114489382 1.2752851378486603 1.4115696160381197 1.291817155760547 1.0842929578455822 1.107128551599797 0.8077099655525014 1.0 18.148532602058797 1.760768772702703 1.5429882314419148 0.9235496188184764 1.283232971139018 0.6801649984821783 0.09682601108754131 0.21442765564633365 0.9859293788158732 0.07421478168645186 0.02958917455328085 57.64594628213209 -1.760768772702703 0.3596833523205416 GDRWEDLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDRWEDLSR 9 1 Q9NR50-3;Q9NR50-2;Q9NR50;H0Y580 Q9NR50-3 EIF2B3 Translation initiation factor eIF-2B subunit gamma 0 123.51 0.0015871 0.0 111880.0 133640.0 138340.0 131300.0 117440.0 117740.0 141060.0 117320.0 168910.0 129110.0 False True 111277.65051103653 138088.12661291394 157817.0695271641 147922.56653750752 132395.28787858432 109600.91093014764 134236.38889847038 126075.01413888883 127284.3937780405 120870.0892633678 0.9206384407359045 1.1424507705295823 1.3056751301249667 1.2238144890850058 1.0953519492328982 0.9067661949958077 1.1105840139323329 1.0430621414052226 1.0530677569096218 1.0 16.88309775119743 2.9997738080214145 24.998071525412712 1.0308044912727248 1.159064320017458 0.24486884005439447 0.10303170134365834 11.895522368379586 1314930.8035940216 0.03096808270453947 0.03662807176870104 999.4793093284165 -2.9997738080214145 0.12825982874473318 GDS(ph)DIS(ph)DEEAAQQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDSDISDEEAAQQSK 15 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 GDS(1)DIS(1)DEEAAQQSK 194.19 1.8001999999999997e-11 0.0 267110.0 218460.0 188430.0 173290.0 198310.0 268650.0 239020.0 245500.0 311660.0 260950.0 True False 265671.90943871066 225731.30903814128 214959.3061370792 195228.49623217617 223563.60302454047 250078.85783407692 227457.68945492973 263820.45662374026 234855.5690300405 244295.94758946527 1.0875002719454328 0.9240075869677482 0.8799135157915687 0.7991475018662773 0.9151343083276801 1.023671740369307 0.9310743452739055 1.079921542812841 0.9613567942793338 1.0 17.898270406641767 2.7477675211197172 22.755022625666626 1.0046938135849908 0.912232098659335 0.201959392112247 0.07618265156467967 284.44084697381436 702998.8639869782 0.02417272465165185 0.025259790059094928 559.4580420898627 -2.7477675211197172 -0.0924617149256558 GDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDSESEEDEDLEVPVPSR 18 0 P13861-2;P13861 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 GDS(1)ES(1)EEDEDLEVPVPSR;GDS(1)ES(1)EEDEDLEVPVPSR 314.11 4.3476999999999984e-61 2336990000.0 1641820.0 1762890.0 1480040.0 1398820.0 1385270.0 1696040.0 1574250.0 1523640.0 1649570.0 1600120.0 True False 1632980.62354335 1821566.727960493 1688416.7672617037 1575910.4685757523 1561675.9233614316 1578796.7468487148 1498097.5132809957 1637341.7536871508 1243055.5766055428 1497998.9716683445 1.0901079736554655 1.2159999855886323 1.1271147705670905 1.0520103807685772 1.042508007613763 1.0539371366125736 1.000065782163082 1.0930192774856302 0.8298107008852834 1.0 20.514605202754023 3.227538391084132 0.4718687253306969 0.970810169002972 1.1834875564175535 0.47360169342414593 0.06902574482286279 1.3038268114606357 0.5473667948156676 0.058674034111685265 0.13191852232521797 1688.6451269873273 -3.227538391084132 0.21267738741458153 GDS(ph)ETDLEALFNAVMNPK ddPTM_BT-474_Trastuzumab_2h_R1 8 GDSETDLEALFNAVMNPK 18 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 GDS(0.754)ET(0.246)DLEALFNAVMNPK;GDS(0.605)ET(0.395)DLEALFNAVMNPK;GDS(0.962)ET(0.038)DLEALFNAVMNPK;GDS(0.5)ET(0.5)DLEALFNAVMNPK;GDS(0.901)ET(0.099)DLEALFNAVMNPK;GDS(0.994)ET(0.006)DLEALFNAVMNPK;GDS(0.5)ET(0.5)DLEALFNAVMNPK;GDS(1)ETDLEALFNAVMNPK 353.26 1.8737999999999998e-90 8138160000.0 7795152.0 7026188.0 6193656.0 5902743.0 5430950.0 7222288.0 6642353.0 6790364.0 9969599.0 7605720.0 True False 7753183.7677548025 7260050.42015966 7065668.928576961 6650029.658578132 6122549.290737382 6723028.229997242 6321037.009137403 7297095.44244972 7512724.9122323105 7120316.438015512 1.0888819106915528 1.0196246870993129 0.992325129098647 0.9339514214668172 0.8598703925641519 0.9442035741702236 0.8877466421842237 1.0248274084407796 1.0551111004170717 1.0 22.76350992756799 4.467444124899264 1.732832592097679 0.9555150167173292 1.0975839583571967 0.3398847121717693 0.056271049903184475 0.6625536645636448 2.9303626405048444 0.01624638684905019 0.131169886259634 29338.920134177162 -4.467444124899264 0.1420689416398675 GDS(ph)LILEHQWELEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDSLILEHQWELEK 14 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK 264.01 7.5753e-25 439090000.0 638636.0 543316.0 559683.0 517798.0 514944.0 678639.0 640776.0 643061.0 795959.0 648801.0 True False 635197.6547351305 561399.9446185428 638481.5015481558 583351.1737089755 580519.0660877866 631726.2832743711 609779.2168779694 691049.477217593 599805.5697541619 607393.9647135179 1.0457753807855605 0.9242764617908764 1.0511818336049825 0.9604164802396705 0.9557537608421791 1.040060191530434 1.0039270264490965 1.1377285869864247 0.9875066342436656 1.0 19.212273047872813 2.3937803830643194 2.2875034992236882 1.0545369014119041 0.9870019807324745 0.09450488786475919 0.055143898307021225 0.43793195529022816 4.6912014462821565 0.02170469856152576 0.016964310411215537 247.6169575000969 -2.3937803830643194 -0.06753492067942968 GDS(ph)PELKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDSPELKPR 9 1 Q5VWQ8;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8-5;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4 Q5VWQ8 DAB2IP Disabled homolog 2-interacting protein 1 GDS(1)PELKPR;GDS(1)PELKPR;GDS(1)PELKPR 144.1 0.0009504 194810000.0 894260.0 882500.0 779080.0 721060.0 734130.0 982010.0 995400.0 934440.0 1116530.0 931950.0 True False 889445.4035216267 911873.4790174855 888767.6921152462 812346.122068052 827617.1039705822 914125.9601028905 947248.699202734 1004172.6577901749 841376.1422354847 872472.1531174633 1.0194542030293066 1.0451605541325713 1.0186774316401466 0.9310854440057796 0.9485885606931891 1.0477422767438391 1.085706513174184 1.1509509549412293 0.964358735380988 1.0 19.734749559684072 2.5291073289988937 6.412875224507027 1.0724623423128339 0.9936601100695648 0.15718695522939696 0.057594523342946756 0.29874922190789943 28.64352544480115 0.01981098902865181 0.018409552151632938 338.1483938974565 -2.5291073289988937 -0.0788022322432691 GDS(ph)PENR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDSPENR 7 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 GDS(1)PENR;GDS(1)PENR;GDS(1)PENR 111.31 0.006931399999999999 177483900.0 607502.8 634008.0 562937.4 641945.0 619192.0 470426.9 608624.3 592494.1 706001.0 679770.8 True False 604232.0724247069 655110.5730140706 642194.0927804039 723215.1711798959 698042.430961481 437907.39566880814 579182.8174383903 636709.0183660774 532016.5134787189 636387.2455629383 0.949472316797004 1.0294212801744165 1.0091247070992584 1.1364388212088552 1.096883125531536 0.6881146640225985 0.9101106621425987 1.000505624217617 0.8359949341978176 1.0 19.27954539598338 GDS(ph)RS(ph)PSHKR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDSRSPSHKR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GDS(1)RS(0.982)PS(0.018)HKR;GDS(0.999)RS(0.931)PS(0.07)HKR;GDS(0.93)RS(0.984)PS(0.086)HKR 90.759 0.0056915 984524000.0 273993.0 259172.0 185703.0 188994.0 197894.0 189541.0 263134.0 225844.0 350989.0 270487.0 True False 272517.8521314838 267798.38334721763 211848.3682405885 212920.62102200856 223094.6278903658 176438.4768015214 250405.20315050436 242697.62609259493 264492.46396164084 253224.28808442858 1.0761916014968613 1.0575540970932844 0.8366036680097417 0.8408380674408996 0.8810159150925636 0.6967675894608273 0.9888672411511162 0.9584294931917277 1.0444987957610736 1.0 17.950056262372314 2.0672121585535197 24.99998776992767 0.9907012153355519 0.8945233419897145 0.17787554565617103 0.10446583077511833 105.73311932402274 39326.69337117019 0.04225414039764409 0.031206748303220712 116.73797581199287 -2.0672121585535197 -0.09617787334583738 GDSEPLSEAAQAHTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDSEPLSEAAQAHTR 15 0 H3BP71;O75150-4;O75150;O75150-3;H3BS50 H3BP71 RNF40 E3 ubiquitin-protein ligase BRE1B 0 207.66 3.2826e-09 200750000.0 185700.0 239680.0 207470.0 209430.0 236420.0 224120.0 210620.0 182590.0 237110.0 223600.0 False True 184700.21183320953 247657.60391038045 236679.9726384323 235943.81652665825 266526.68562887335 208627.11192173176 200431.50595346573 196215.79297323304 178677.41761122044 209329.65656640872 0.8823413503027191 1.1830985058336079 1.1306566710166404 1.1271399399244049 1.273239014483928 0.9966438360612602 0.9574921644696813 0.9373530544678681 0.8535695349719163 1.0 17.675417192864437 2.512811444479299 9.429821659368349 0.9387084905276472 1.1251222572106108 0.43999990054057525 0.09779523996585825 0.41463033681888606 106.74549292198705 0.03113163216593978 0.028997427385266703 325.69526477353986 -2.512811444479299 0.1864137666829636 GDSET(ph)DLEALFNAVMNPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GDSETDLEALFNAVMNPK 18 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 GDS(0.443)ET(0.557)DLEALFNAVMNPK;GDS(0.272)ET(0.728)DLEALFNAVMNPK;GDS(0.446)ET(0.554)DLEALFNAVMNPK;GDS(0.104)ET(0.896)DLEALFNAVMNPK 314.72 3.1617999999999996e-60 5954450000.0 4577026.0 4227449.0 3722142.0 3280148.0 3723673.0 4560512.0 4035019.0 4221842.0 5732360.0 4513678.0 True False 4552383.800571394 4368157.084418113 4246187.2401617635 3695414.400478852 4197860.684610966 4245254.539730504 3839829.7157005356 4536897.288119293 4319696.687688644 4225611.205685846 1.077331438927901 1.0337337894552303 1.0048693629097327 0.8745277832249266 0.9934327793722386 1.0046486373422683 0.9087039788548897 1.0736665223754118 1.0222655321143128 1.0 22.010728601757314 -0.11769473479723569 7.098490958260731 0.9999977026485296 0.99827705074604 0.0 0.061000438823435144 0.0 0.0 0.05995159945027658 0.01413072751645477 0.7626148629829429 0.11769473479723569 -0.0017206519024896005 GDSVIVVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDSVIVVLR 9 0 P62316;P62316-2;K7EJB5 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 0 105.57 0.007158199999999998 173570000.0 146580.0 168080.0 174550.0 151930.0 126300.0 148710.0 172020.0 127830.0 192510.0 162510.0 False True 145790.82956656895 173674.44119349433 199125.1227842018 171164.32242226627 142383.55636125014 138430.02772568603 163698.7354197854 137369.32370758735 145068.49000183903 152138.47266818903 0.9582771997753378 1.1415550461866066 1.3088413423111571 1.1250561374805716 0.9358813314222355 0.9098949483185568 1.0759851374136578 0.9029229839002466 0.9535292911624695 1.0 17.215025501326092 3.2807624413300904 6.320531736128738 0.9597723418593165 1.1482867659047657 0.45165246316381713 0.09149270316272874 0.16519863090647144 16.572544790491474 0.025998611181103557 0.03483615073847758 1908.808856313819 -3.2807624413300904 0.18851442404544927 GDT(ph)PGHATPGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 GDT(0.77)PGHAT(0.23)PGHGGATSSAR;GDT(0.986)PGHAT(0.014)PGHGGATSSAR;GDT(1)PGHATPGHGGATSSAR 246.69 4.1016e-24 938239000.0 338458.0 458533.0 460368.0 517305.0 479388.0 425436.0 424440.0 320643.0 410824.0 439731.0 True False 336635.7797342192 473794.99371594767 525183.8128096106 582795.759959524 540435.220244711 396026.61068862205 403908.21568174387 344571.0088521632 309581.92995956296 411666.99110735 0.8177380917248112 1.15091810601933 1.275749147136888 1.4156970865986895 1.3127970712225074 0.96200720301461 0.9811527870992628 0.8370139367387602 0.7520202898143796 1.0 18.651118247422154 2.5668801370932095 3.836992483138901 0.8849066690958876 1.2080244665404074 0.4466632609552261 0.1607550254605136 0.22390470701649903 6.07058019766669 0.05831174311810828 0.05360297046260572 368.87577681845517 -2.5668801370932095 0.32311779744451985 GDTHPLTLDEILDETQHLDIGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDTHPLTLDEILDETQHLDIGLK 23 0 P29084;E5RH41;E5RIW4 P29084 GTF2E2 Transcription initiation factor IIE subunit beta 0 ; 270.68 7.7812e-52 137953000.0 85566.0 96093.0 90770.0 81294.0 82318.0 102586.0 104610.0 81638.0 129719.0 103787.0 False True 85105.32216327626 99291.3974155548 103549.62701301643 91585.81206473839 92800.70936298798 95494.47128146882 99549.61465099255 87730.24210936428 97751.4905955458 97163.22480347886 0.8759005512158456 1.02190306688956 1.0657285945629598 0.9425974925181695 0.9551011666264222 0.9828252558991816 1.0245606282864774 0.9029161216788181 1.0060544078611713 1.0 16.568122752713638 GDTNIKPILQVINIRPITTGNS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDTNIKPILQVINIRPITTGNSPPR 25 2 P27694;I3L524;I3L2M5 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 1 GDTNIKPILQVINIRPIT(0.215)T(0.167)GNS(0.618)PPR;GDTNIKPILQVINIRPIT(0.003)T(0.003)GNS(0.995)PPR 167.52 6.5256e-12 604380000.0 481250.0 617600.0 534690.0 521620.0 562760.0 585170.0 645490.0 612870.0 666760.0 635380.0 True False 478659.0034719019 638156.4426529169 609969.7043912052 587657.0385170962 634424.1502601511 544718.5752420129 614265.1826887402 658605.471490801 502445.93212625914 594829.5044238142 0.8046994977755151 1.0728392554620698 1.0254530077186683 0.9879419802592582 1.0665646971810696 0.9157558110195935 1.032674368235571 1.1072172220656131 0.844688988003305 1.0 19.18211668341127 4.748727958901527 24.744393077653758 1.0138875318551652 0.8046993641911837 0.3965522694452891 0.07387242228794856 1173.2049484792321 2855178.6030548234 0.01686910762539049 0.22843292788659145 56069.66468743074 -4.748727958901527 -0.20918816766398152 GDTNIKPILQVINIRPITTGNSPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDTNIKPILQVINIRPITTGNSPPR 25 2 P27694;I3L524;I3L2M5 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 175.0 1.3337e-12 691330000.0 389750.0 436620.0 387220.0 345170.0 355470.0 399490.0 384950.0 343130.0 413880.0 391340.0 False True 387651.62930529594 451152.6327576366 441737.21022342413 388868.4866089228 400736.9974642399 371874.19659830735 366328.4978481936 368736.10297883494 311884.8197078648 366364.3461569699 1.0581041342358284 1.2314315994175342 1.205731984722554 1.0614255745353314 1.0938209508316699 1.0150392648715243 0.9999021512078009 1.0064737653834057 0.8512968660281064 1.0 18.482919584516456 2.8219399347852048 0.8378177694085327 0.9526307694797297 1.168884983377389 0.6328241469595505 0.06263368215892622 0.38363764332560957 0.586781091514675 0.037792910413003325 0.0391986972572215 663.6512775864056 -2.8219399347852048 0.21625421389765942 GDTPGHAT(ph)PGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 GDT(0.059)PGHAT(0.941)PGHGGATSSAR;GDT(0.216)PGHAT(0.784)PGHGGATSSAR 228.23 3.9864e-19 909560000.0 287947.0 359170.0 356863.0 421717.0 393244.0 361604.0 359756.0 251013.0 358387.0 299010.0 True False 286396.72534591897 371124.7563271504 407106.2084911984 475106.32896038186 443321.29246020067 336607.1666042566 342353.2278786201 269744.86467818747 270067.3259897619 279926.9258046597 1.0231124588056744 1.3257915624241552 1.4543302946687156 1.6972512651102503 1.5837036440344499 1.2024822751032882 1.2230092796343681 0.9636260031177653 0.9647779512936955 1.0 18.09469073897013 2.1113886899966783 1.7012490134665859 0.9722329161925823 1.4207260871569833 0.5260806599084151 0.17399821336697768 0.3057764987085673 1.696884282296692 0.10962898833823201 0.060002210087289676 129.2375421559568 -2.1113886899966783 0.448493170964401 GDTPGHATPGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 233.63 2.3599e-24 586450000.0 281210.0 443900.0 451330.0 469190.0 462130.0 447600.0 402400.0 303390.0 376880.0 426080.0 False True 279695.9966053682 458674.94315678376 514873.3409693151 528589.405892865 520979.5162408907 416658.4655370658 382934.37468271994 326030.50238320424 284002.9739332657 398887.20961455913 0.7011906871509762 1.1498863139783222 1.2907742553761807 1.3251600782176893 1.3060822801119851 1.0445520826292698 0.9600066521379458 0.8173501043020266 0.7119881688051494 1.0 18.6056213383445 2.1955528105557267 2.179336742110184 0.83117212329221 1.1696703435832352 0.3532912213609315 0.1809302129281103 0.3265292546186273 3.1181271242575628 0.08953460863564339 0.05782395856308134 156.8746646927132 -2.1955528105557267 0.33849822029102516 GDTSGDYKK ddPTM_BT-474_Trastuzumab_2h_R1 5 GDTSGDYKK 9 1 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ;;;; 125.75 0.00079034 4921090000.0 9433760.0 7804610.0 6204740.0 5093850.0 5380150.0 5778450.0 6976580.0 7199820.0 11390400.0 8227410.0 False True 9382969.684349272 8064381.725863634 7078313.459433119 5738730.8877158 6065280.211852567 5378999.352508178 6639096.172276271 7737107.128345165 8583388.543540312 7702329.649959911 1.2181989230229986 1.0470055285033935 0.918983448010429 0.7450643050243466 0.7874604811135467 0.6983600542903503 0.8619594945940577 1.0045151895550766 1.1143886244319583 1.0 22.876863439302106 4.4858589531913005 2.2223400203986565 0.8795875179980416 1.2279577271302275 0.42377548747766036 0.12079073352490871 0.40174787030660397 3.262442373094272 0.03433707872691399 0.22286729667585395 30609.691543136465 -4.4858589531913005 0.34837020913218597 GDVAEGDLIEHFSQFGTVEK ddPTM_BT-474_Trastuzumab_2h_R1 8 GDVAEGDLIEHFSQFGTVEK 20 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ;;;;;;; 334.03 6.175499999999999e-80 3541414000.0 2494436.0 4304340.0 4486910.0 4761240.0 4893210.0 5109610.0 4941500.0 4768360.0 4774571.0 5088300.0 False True 2481006.2337338906 4447607.35487152 5118627.927079143 5364012.495819059 5516331.2891720645 4756394.687428163 4702460.766636836 5124199.236441462 3597941.9530235794 4763560.337687205 0.5208302315613083 0.9336729336005251 1.0745382789807025 1.1260511288964559 1.1580269584346954 0.9984957364342906 0.9871735494632082 1.075707847321895 0.755305212481143 1.0 22.183608832251355 4.7233658121494395 2.983834050060326 1.0321121311681118 0.4456659434190139 0.6703130644314926 0.10469837193927091 0.2043188508068578 2.7247452017618135 0.02544350909923776 0.2808515128886278 52889.055591527336 -4.7233658121494395 -0.586446187749098 GDVDMSEVEHFMPILMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GDVDMSEVEHFMPILMEK 18 0 E7ENJ6;Q9BXS5;Q9BXS5-2;K7ENA7 E7ENJ6 AP1M1 AP-1 complex subunit mu-1 0 ; 223.29 5.2313e-19 117237000.0 336510.0 375170.0 349930.0 333360.0 312920.0 408070.0 380810.0 339860.0 472490.0 405370.0 False True 334698.2675497758 387657.3066549462 399197.1023539144 375563.3418198288 352768.5071778488 379861.08139345463 362388.7654645301 365222.0789741119 356051.17054162786 379498.93954528245 0.8819478335059722 1.02149773361538 1.0519057123907498 0.9896294895311979 0.9295638812602158 1.0009542631360344 0.95491377630395 0.9623797089175606 0.9382138747693213 1.0 18.533736328681243 3.4461336021169378 24.938716090420947 0.9631893242005746 0.994090587577917 0.04135028326807533 0.04612432950699915 478.49356279180597 385087.943462474 0.012559041651260329 0.01700522595905195 2793.4030443290485 -3.4461336021169378 0.030901263377342447 GDVEEDEAVPDSEQDIKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDVEEDEAVPDSEQDIKPR 19 1 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 0 ;;; 229.6 6.9802e-20 3138110000.0 2044910.0 2114130.0 1874780.0 1764920.0 1732850.0 2260800.0 2063800.0 2000540.0 2837780.0 2308850.0 False True 2033900.431770858 2184497.5390314297 2138732.7281201156 1988358.6910386751 1953518.176093366 2104516.217350756 1963966.1095183853 2149830.453336283 2138447.14330382 2161497.2162940656 0.9409683327087623 1.0106409217481198 0.9894681852919616 0.9198987979488402 0.90378010268397 0.9736381807416783 0.9086137584232693 0.9946024621869347 0.9893360616814647 1.0 21.043599547569865 1.608450170800568 24.999999999999243 0.9939822099437011 0.9514863861779748 0.283524853603789 0.03273094584644148 0.10009932249943101 3583.3119174197413 0.017158445359069095 0.00878942758736882 40.592908591141416 -1.608450170800568 -0.04249582376572636 GDVEEDETIPDSEQDIRPR ddPTM_BT-474_Trastuzumab_2h_R1 5 GDVEEDETIPDSEQDIRPR 19 1 Q92973-2;Q92973;Q92973-3 Q92973-2 TNPO1 Transportin-1 0 ;;;; 264.88 2.0781999999999994e-31 4972640000.0 1479377.0 1695130.0 1523740.0 1533700.0 1579550.0 1692894.0 1588930.0 1474346.0 1753540.0 1665240.0 False True 1471412.198606235 1751551.3773222752 1738269.3474144952 1727866.2627461979 1780696.3297736559 1575868.2224238284 1512067.3855979491 1584369.1850972911 1321403.5632321665 1558962.957516308 0.9438403853741617 1.1235362385471899 1.1150164531066553 1.1083433730195755 1.1422313283252135 1.0108439169936747 0.9699187388050121 1.0162968770094831 0.847617037249805 1.0 20.57215521792278 2.522936397883575 4.319132882182231 0.9678453536045245 1.091225898132592 0.45034649566647844 0.06648209644839982 0.20321396167730243 8.186015684808426 0.022250686922125097 0.020155598373676906 333.37758627882044 -2.522936397883575 0.12338054452806746 GDVHDIGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GDVHDIGK 8 0 Q99707-2;Q99707;B1ANE3 Q99707-2 MTR Methionine synthase 0 78.334 0.029348000000000006 0.0 57733.0 72272.0 72716.0 88437.0 75087.0 64328.0 76793.0 65040.0 86183.0 74625.0 False True 57422.17194273933 74677.5298306535 82953.78074119748 99633.11513235018 84648.88437448289 59881.15677182392 73078.22921225191 69893.61506642794 64944.354443034 69862.3686103232 0.8219327956517974 1.0689235323123412 1.1873886097949995 1.4261342281147322 1.2116520819188883 0.8571303544806465 1.0460313709067905 1.0004472573250276 0.9296042452450933 1.0 16.092227936173416 2.7516341256052437 24.768523646486845 0.9761002677989231 1.1572522328770944 0.259087126056728 0.14791086163234687 1035.617495674885 1962036.000169923 0.048622333678753626 0.05127160672501958 564.46124016551 -2.7516341256052437 0.18115196507817133 GDVIHVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDVIHVTR 8 0 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80;C9JAD7;C9JDI6;B1ANY6;E7ENL8 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 0 ; 76.827 0.034795 369850000.0 320620.0 425060.0 385100.0 421010.0 438570.0 408170.0 414180.0 324336.0 458650.0 400170.0 False True 318893.81754423084 439207.8651458035 439318.7326507946 474309.8228328718 494419.2898919516 379954.16862883 394144.53107875056 348539.5992648365 345621.8530951295 374630.8079972266 0.8512215512894807 1.1723751911750273 1.1726711292095522 1.2660726579549837 1.319750750172185 1.014209617890376 1.0520878760234487 0.9303548769203647 0.9225665527691682 1.0 18.51511001981922 2.5397599706110965 9.480506750628805 0.9769558928646341 1.1647935281440833 0.3431815357777971 0.12001038151824253 0.5651459289658243 82.94202795830903 0.040203675314154724 0.037826490352298826 346.54526607204184 -2.5397599706110965 0.1878376352794492 GDVTAEEAAGAS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDVTAEEAAGASPAK 15 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK 243.1 6.1398e-18 1872210000.0 2359140.0 1967800.0 1826740.0 1609470.0 1798870.0 2488660.0 2358140.0 2128000.0 3136320.0 2434120.0 True False 2346438.6523650936 2033297.033439778 2083929.1136912843 1813228.7369773237 2027945.431762167 2316624.791875502 2244067.7592303944 2286802.165765048 2363415.9605348688 2278772.3776450246 1.0296941789289187 0.8922773741627803 0.914496390308584 0.7957041935233512 0.8899289159621672 1.0166108798762936 0.9847704760883159 1.003523734181964 1.037144378139829 1.0 21.119825392986932 2.7392191046952568 24.996536496664227 1.0062285278843626 0.8982656144904123 0.47427350267180146 0.054526372453793055 52.81565171366833 2004934.0543313671 0.017498361367413267 0.017567903462631835 548.5536443875721 -2.7392191046952568 -0.10796291339395025 GDVTDTEQLAQEMLIISHHPSLVAVQSGLWPALLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDVTDTEQLAQEMLIISHHPSLVAVQSGLWPALLAR 36 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ; 244.49 3.725e-50 461330000.0 71900.0 175284.0 180583.0 209243.0 236791.0 189691.0 163785.0 156850.0 158932.0 178991.0 False True 71512.89838884097 181118.22197858422 206007.51674442587 235733.14234583193 266944.93027978437 176578.10765458355 155862.09383054034 168554.94346816163 119765.33817969066 167567.6411380953 0.4267703352696002 1.0808663340275924 1.2293991569330003 1.4067939415078374 1.5930577554636016 1.0537721152800772 0.930144345125034 1.005891962931272 0.7147283172709344 1.0 17.354384052609745 2.4777359092079987 19.556051867076146 0.9322494399712615 1.1787272700522404 0.11907163760436934 0.29301894519055244 3.0718538459339113 97816.04368602633 0.1057364487431108 0.09004192175772029 300.42488887912873 -2.4777359092079987 0.2464778300809789 GDVTLDPDTANPELILSEDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GDVTLDPDTANPELILSEDRR 21 1 Q96F44-3;Q96F44;R4GNB9;R4GMV1 Q96F44-3 TRIM11 E3 ubiquitin-protein ligase TRIM11 0 66.38600000000001 0.036474 44337000.0 7643.6 11145.0 9524.5 10684.0 11017.0 11604.0 9111.8 9339.9 12221.0 8892.5 False True 7602.4477068838005 11515.954587705231 10865.466811561913 12036.593304544807 12419.949647125037 10801.842792877822 8671.02742354377 10036.890765051208 9209.298303010086 8324.973036747724 0.9132098894885804 1.3833023286528399 1.305165405773695 1.445841716413184 1.49189067547744 1.2975228562539254 1.0415682291424257 1.205636429180829 1.106225601255261 1.0 13.023229884195736 2.3200003634044277 6.586593240158615 1.1144845152945209 1.326239799112839 0.30979428229293215 0.155948842923965 0.27353492267902396 17.935865654842587 0.05467604743738632 0.04543284381369544 208.92978791142963 -2.3200003634044277 0.2117552838183181 GDVVIVLTGWRPGSGFTNTMR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDVVIVLTGWRPGSGFTNTMR 21 1 P14618;P14618-3;B4DNK4;P14618-2;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ; 190.25 1.7032e-17 1081510000.0 593220.0 773450.0 847390.0 884150.0 807440.0 795870.0 927750.0 665550.0 669370.0 760480.0 False True 590026.1694329384 799193.8156896016 966695.1463540824 996083.2993460587 910262.6979281686 740853.3801764633 882871.18815083 715216.7205944216 504412.7325984666 711945.5153203164 0.8287518591467995 1.1225491255886775 1.3578218073600052 1.3991004619193421 1.2785566849432655 1.040604040947067 1.2400825191708824 1.004594741035251 0.7084990659313624 1.0 19.441407311436222 1.5367963665085727 3.970732461051191 0.8517779959720564 1.1912826985840121 0.37848598867083316 0.16860399330796952 0.1847263465808633 6.4398756914132305 0.11036058571030842 0.04548940387450524 34.41885086296605 -1.5367963665085727 0.33950470261195576 GDVVPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDVVPK 6 0 P68363;P68363-2;P68366-2;P68366;Q9BQE3;F5H5D3;A0A1W2PQM2;A6NHL2-2;A6NHL2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha chain-like 3 0 ;; 102.98 0.081604 1561150000.0 3798600.0 3910000.0 3380900.0 3263600.0 3465200.0 3812700.0 4022300.0 3868300.0 5200800.0 4007700.0 False True 3778148.759664132 4040141.9863550877 3856901.3326903917 3676771.425375557 3906472.680150468 3549137.0231304127 3827725.9823218384 4156972.188829388 3919132.527149571 3751925.154835404 1.0069893731208714 1.0768183851290947 1.0279792835738466 0.9799692887362131 1.0411915267328524 0.9459509123086739 1.0202031821953441 1.1079571199526643 1.0445657536901218 1.0 21.839199617906463 1.9658796604045254 24.025344851749253 1.0631472100895472 1.0137003739879382 0.1239076267771404 0.041300261449200015 571.516471522937 402423.6871626981 0.016920569875521797 0.010930346270196342 92.44419828210327 -1.9658796604045254 -0.04944683610160894 GDYDAFFEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GDYDAFFEAR 10 0 O75368 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein 0 ;;; 255.84 8.784200000000001e-17 4459150000.0 1550540.0 1901990.0 1773030.0 1780950.0 1554500.0 1649980.0 1653120.0 1437650.0 1835600.0 1652340.0 False True 1542192.06492119 1965296.5873727675 2022657.2125469702 2006418.0873950804 1752456.3607566373 1535920.7662351395 1573152.2700683358 1544934.743238778 1383240.9757798333 1546886.246560556 0.9969653995891402 1.270485526484272 1.3075668731584325 1.2970689291835622 1.1328928449995328 0.9929112561768534 1.0169799321483277 0.9987384312672525 0.8942098870265464 1.0 20.56093567848542 2.881153426119291 3.0321702287284626 0.9837209630572162 1.2278219050729304 0.6210712549617778 0.08766176488333165 0.1733851652607118 3.0474281230677156 0.028628394903997382 0.03099202992310002 760.5949299461677 -2.881153426119291 0.2441009420157142 GDYGPPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GDYGPPGR 8 0 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 ; 123.45 0.0031339 480230000.0 787200.0 1139260.0 1013700.0 1010910.0 1026600.0 992820.0 996830.0 918950.0 945370.0 1009500.0 False True 782961.8026661414 1177179.5804027868 1156420.1487616482 1138891.1023490627 1157331.4248650763 924188.6902468934 948609.5246396033 987526.7153335493 712396.2308089884 945072.8457235685 0.8284671453729989 1.2455966603309954 1.223630701055925 1.2050828753598382 1.2245949400641154 0.9779020680033552 1.0037422289001723 1.0449212669712007 0.7538003382835132 1.0 19.850066010240084 2.7221431762001016 21.86809755131072 0.9699451293286105 1.1586903773678232 0.325830411939254 0.1348190852758614 190.65343645074816 253949.53794358583 0.04284330578666034 0.040562653273416065 527.403704784221 -2.7221431762001016 0.18874524803921267 GDYPLEAVR ddPTM_BT-474_Trastuzumab_2h_R1 6 GDYPLEAVR 9 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;; 236.82 7.151200000000001e-10 8662700000.0 4199510.0 5547480.0 5944870.0 4704530.0 3127870.0 4218800.0 5106790.0 3326730.0 7027410.0 4485110.0 False True 4176900.304769428 5732124.518277522 6781856.022263646 5300123.015633666 3526185.7041620235 3927164.2859869855 4859755.057867721 3574987.485392651 5295598.967969568 4198866.439904142 0.9947685558830931 1.3651600021858241 1.6151635493360614 1.2622747333098465 0.8397946814051376 0.9352915464671557 1.157396913529516 0.8514172900136986 1.2611972883068088 1.0 22.001568468106186 3.3889057873815585 6.445307737190573 0.9984045034003987 1.3464458246132736 0.3907878310037104 0.18487619106590186 0.19480941979144475 11.666941481482334 0.0508909629729556 0.06917629123692069 2448.5320178816246 -3.3889057873815585 0.3480413212128749 GDYPQAMK ddPTM_BT-474_Trastuzumab_2h_R1 3 GDYPQAMK 8 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;; 81.548 0.052267 397880000.0 559370.0 537930.0 460050.0 485560.0 428150.0 549230.0 560690.0 498600.0 765480.0 561920.0 False True 556358.4140718492 555834.6748644476 524821.0411737156 547031.8462144111 482672.36465612927 511263.022848353 533567.2826561993 535808.0638394986 576837.7109064857 526057.7845160841 1.057599431940045 1.0566038393971395 0.9976490351844024 1.0398702620048115 0.9175272733586393 0.9718761662631024 1.014275044227362 1.01853461655811 1.0965291796548806 1.0 19.004861754669243 -0.5529177902011297 6.3956274825087025 0.9999999999911293 1.0156297286031597 0.009890918293192774 0.047375841117559395 0.0 7.59051844092085e-19 0.04688264637061063 0.011050345722876559 0.27995112031144387 0.5529177902011297 0.01562972861203038 GDYYEAHQMYR ddPTM_BT-474_Trastuzumab_2h_R1 3 GDYYEAHQMYR 11 0 Q7L5D6 Q7L5D6 GET4 Golgi to ER traffic protein 4 homolog 0 ;; 168.3 1.8226e-05 1282430000.0 864840.0 1106330.0 1137240.0 1149560.0 926910.0 976650.0 1063060.0 870240.0 1278420.0 1039790.0 False True 860183.7975327579 1143153.5252593926 1297353.5069327173 1295094.1781329573 1044946.4942739991 909136.4842868084 1011635.726516433 935181.7277891805 963370.5209503443 973429.7119909931 0.8836629773436758 1.174356516117899 1.3327654693004904 1.330444470904891 1.0734688713545943 0.9339518540350661 1.039248868259112 0.9607080164796054 0.9896662379247965 1.0 19.892717285099934 3.0056274824803837 24.396267117316714 0.986939438953984 1.1921702721980751 0.3748749996550773 0.11865534379995805 117.4918972124917 509342.59660931665 0.03576815605090584 0.04262022020113772 1013.0420727935983 -3.0056274824803837 0.2052308332440912 GEAAAERPGEAAVAS(ph)SPSKANGQENGHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 GEAAAERPGEAAVAS(0.483)S(0.483)PS(0.035)KANGQENGHVK;GEAAAERPGEAAVAS(0.5)S(0.5)PSKANGQENGHVK;GEAAAERPGEAAVAS(0.5)S(0.5)PS(0.001)KANGQENGHVK;GEAAAERPGEAAVAS(0.824)S(0.175)PS(0.001)KANGQENGHVK 221.72 8.5376e-35 5644920000.0 2627000.0 2086830.0 2139670.0 1949160.0 2054990.0 3196850.0 3095470.0 2654800.0 4874750.0 3310330.0 True False 2612856.5238871393 2156288.8750346233 2440916.937654959 2195923.4561481234 2316680.795619994 2975859.2840754436 2945730.2902562646 2852914.6568012433 3673433.1808034047 3099061.9052839032 0.843112078346101 0.6957876095853874 0.787630906466629 0.7085768284925422 0.7475426004462999 0.9602451887139141 0.9505232164719885 0.9205736264696814 1.1853371417138192 1.0 21.563400143078272 2.405426307692982 1.0953338306194549 1.0348583191184173 0.7464279849342403 0.7150721251441292 0.07761914370048945 0.279628204599044 0.6668381214083872 0.04840701326382704 0.031976074525088626 254.34681736908618 -2.405426307692982 -0.28843033418417696 GEAAAERPGEAAVASS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 6 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 GEAAAERPGEAAVAS(0.142)S(0.578)PS(0.279)K;GEAAAERPGEAAVAS(0.29)S(0.709)PSK;GEAAAERPGEAAVAS(0.204)S(0.795)PS(0.001)K;GEAAAERPGEAAVAS(0.006)S(0.875)PS(0.119)K;GEAAAERPGEAAVAS(0.041)S(0.948)PS(0.011)K;GEAAAERPGEAAVAS(0.036)S(0.963)PS(0.001)K 253.98 4.1523e-31 13001510000.0 8490700.0 6245300.0 5820320.0 5199440.0 5215280.0 8365470.0 7393020.0 7088870.0 9963230.0 7943370.0 True False 8444987.014605457 6453171.035136422 6639770.464871649 5857688.570889406 5879414.994613617 7787184.749098216 7035391.378520995 7617877.475952492 7507925.46694208 7436417.325938795 1.1356257515495658 0.8677795707655171 0.8928722224493264 0.7877030449134879 0.7906246700418178 1.0471688728301891 0.9460726947075724 1.024401555488387 1.0096159397555406 1.0 22.826176304773615 2.7213782430801965 24.90968097333071 1.0034383409280223 0.8873428053081273 0.25782982459279624 0.09329138467152093 1089.1208041580985 1578921.3510974108 0.030595780607913473 0.028912789705522395 526.4755937846081 -2.7213782430801965 -0.11609553561989505 GEAAAERPGEAAVASS(ph)PSKANGQENGHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 GEAAAERPGEAAVAS(0.131)S(0.867)PS(0.002)KANGQENGHVK;GEAAAERPGEAAVAS(0.027)S(0.972)PS(0.001)KANGQENGHVK;GEAAAERPGEAAVAS(0.152)S(0.828)PS(0.02)KANGQENGHVK;GEAAAERPGEAAVAS(0.118)S(0.873)PS(0.009)KANGQENGHVK 261.14 1.9844999999999997e-58 5641660000.0 2083950.0 1659530.0 1490770.0 1513756.0 1539430.0 2462780.0 2248810.0 1867780.0 3411690.0 2549350.0 True False 2072730.2447486094 1714766.4528429322 1700657.4579948718 1705397.3543911015 1735467.2855835245 2292533.8153605335 2140026.4690115517 2007163.2279946625 2570924.713803824 2386648.300391654 0.8684690762390378 0.7184830930311498 0.7125714575188101 0.7145574629120018 0.7271566930488798 0.9605662530940666 0.8966660352345877 0.8409966511049335 1.0772113819124207 1.0 21.186554553982564 2.7409725575789987 24.990380989415872 0.9318784280545251 0.7427402918219341 0.6566930142338676 0.07377536171936065 145.5716742960227 1508289.1497040766 0.02323803667438539 0.023611178686266502 550.7728927876451 -2.7409725575789987 -0.18913813623259101 GEAAAERPGEAAVASSPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 0 ; 208.47 2.4496000000000004e-16 1403880000.0 685230.0 745360.0 761820.0 690270.0 758150.0 874210.0 849790.0 750890.0 973700.0 962650.0 False True 681540.7978162097 770168.8570203643 869077.6341418544 777658.1112250221 854695.908592888 813777.9203689856 808682.4111869514 806925.2247421602 733744.6819115389 901212.8528338709 0.7562484219716789 0.8545915147554346 0.9643422543398409 0.862901709379388 0.9483840647692607 0.9029808194701779 0.8973267620896032 0.8953769602872146 0.8141746753880318 1.0 19.781508363451188 4.625835098426286 3.350979781098529 0.9054089284878231 0.7518368288107052 0.468846099016652 0.04991756100112012 0.21807420049466136 3.9531985138720636 0.01123441197847719 0.07077229800769456 42250.81574973695 -4.625835098426286 -0.15357209967711782 GEADRDTYR ddPTM_BT-474_Trastuzumab_2h_R1 3 GEADRDTYR 9 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 ;; 156.16 6.528899999999999e-05 8489013000.0 3568360.0 5162390.0 4589700.0 4526620.0 4288610.0 4137730.0 4430650.0 3731620.0 4922440.0 4527780.0 False True 3549148.3462420697 5334217.030419343 5235889.865612447 5099689.627875198 4834739.0629170295 3851698.4642687305 4216322.532773353 4010092.4331824128 3709370.6193166682 4238813.203972515 0.8372976527759922 1.25842229268802 1.2352254307185548 1.2030937393268215 1.1405879028559285 0.9086737912062297 0.9946941112719749 0.946041318693697 0.8750965048047729 1.0 22.015228960430473 2.7479070019646317 22.18480303555905 0.9461478692573071 1.1511457649526562 0.40331340208068045 0.11471606231286649 136.13519706928767 323132.4619508828 0.0345405741513611 0.0360818344047143 559.6377501356731 -2.7479070019646317 0.2049978956953491 GEADRDTYRR ddPTM_BT-474_Trastuzumab_2h_R1 7 GEADRDTYRR 10 2 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 ;;;;;; 212.28 2.447e-08 2628577200.0 1482830.0 2619326.0 2524005.4 2939867.4 2520599.0 2157218.4 2469549.3 2020101.1 3005509.1 2672260.2 False True 1474846.608037899 2706508.6824939977 2879363.4212717814 3312054.3114086054 2841582.341889235 2008094.9695538965 2350087.765764536 2170851.301947537 2264841.6540636085 2501714.266198943 0.5895343956601219 1.0818616334655258 1.1509561504186614 1.3239139082181746 1.135854074257122 0.80268757974705 0.9393909598377974 0.8677455020656244 0.9053158806600107 1.0 21.25448559053127 2.745471934814456 24.575947638961125 0.8957705524749737 1.07794956818502 0.14560149595297023 0.18167375402354358 761.5939217727868 2708151.3335327515 0.05767204334693979 0.05994612950854829 556.5086701270072 -2.745471934814456 0.18217901571004624 GEAEAPHHGTGHPESAGEHALEPPAPAGASAST(ph)PPPPAPEAQLPPFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEAEAPHHGTGHPESAGEHALEPPAPAGASASTPPPPAPEAQLPPFPR 48 0 Q9H6Z4;Q9H6Z4-2;K7EPW1;K7EMT3 Q9H6Z4 RANBP3 Ran-binding protein 3 1 GEAEAPHHGTGHPESAGEHALEPPAPAGASAS(0.04)T(0.96)PPPPAPEAQLPPFPR 181.17 2.1226999999999998e-29 671600000.0 103700.0 188410.0 194750.0 211250.0 180090.0 211560.0 184480.0 28633.0 182670.0 102950.0 True False 103141.69072215316 194681.11295375 222169.1072026545 237994.22834004927 203023.39402294165 196935.35515867232 175555.99761796274 30769.739855427928 137653.42615259433 96379.64286007053 1.0701605407679313 2.019940177993803 2.305145574415671 2.469341255866479 2.1064966418033175 2.043329372413159 1.8215049610927172 0.31925559114284324 1.4282417123338738 1.0 16.5564408346535 1.8904752235575193 6.250016501176914 0.873400573692973 2.0337664834394316 0.5646432224573873 0.428015394298089 0.15974349139827104 7.825659877966016 0.18818444921643826 0.11460972081961249 77.70969842493662 -1.8904752235575193 1.1603659097464587 GEAERGS(ph)GGS(ph)S(ph)GDELREDDEPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEAERGSGGSSGDELREDDEPVK 23 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 3 GEAERGS(1)GGS(1)S(1)GDELREDDEPVK;GEAERGS(1)GGS(1)S(1)GDELREDDEPVK 87.16 0.004331499999999999 2881700000.0 3867900.0 3774500.0 3140300.0 3361500.0 3408600.0 4884600.0 4321500.0 4039000.0 5365800.0 4231800.0 True False 3847075.6561640846 3900131.9507665713 3582426.944023085 3787065.5553376405 3842665.0056449515 4546939.099111599 4112452.535266838 4340410.689626428 4043470.4880362907 3961722.9009737414 0.9710612661018069 0.9844534936575116 0.9042598469323964 0.9559137905396734 0.9699479498428507 1.1477175998336528 1.0380464858498935 1.0955866420035612 1.0206343525546566 1.0 21.91769654511658 2.8983027489039936 7.66419423147072 1.0666311145428098 0.9538163818044265 0.590454097602205 0.04300349133424322 0.17523675363345453 11.732951836211459 0.012433340042831129 0.013214812752240058 791.2300062763252 -2.8983027489039936 -0.11281473273838327 GEAGVPAEFSIWTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEAGVPAEFSIWTR 14 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 ; 148.18 1.8213e-05 99269000.0 170294.0 208069.0 188006.0 203787.0 190819.0 221081.0 201034.0 165085.0 217607.0 211265.0 False True 169377.15602544227 214994.4508846336 214475.61062255318 229586.4133052483 215118.6685771764 205798.19083869518 191309.2173955418 177404.48098464427 163980.6706344093 197781.88682693365 0.856383558387495 1.08702801016739 1.0844047150294767 1.1608060626206118 1.087656064103651 1.04053103214035 0.9672736996535195 0.8969703132616974 0.8290985249720989 1.0 17.59355078232597 2.0901765296053982 2.3371930584721308 0.8990151616228089 1.064257446279129 0.37738242761671814 0.08327933980588041 0.28857412269027183 3.068790216690016 0.04188034802169344 0.024934499926287743 123.07689452665952 -2.0901765296053982 0.16524228465632007 GEAHLAVNDFELAR ddPTM_BT-474_Trastuzumab_2h_R1 6 GEAHLAVNDFELAR 14 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;;; 253.16 3.2009e-24 17017400000.0 8192660.0 9105630.0 8486680.0 8727650.0 8684690.0 8923510.0 8692980.0 8034170.0 9086780.0 8693250.0 False True 8148551.628850092 9408705.390080426 9681530.776455065 9832569.595133878 9790633.793309448 8306648.75738308 8272467.346991542 8633720.562088612 6847464.825613786 8138439.342334221 1.001242533868044 1.1560822652002312 1.1896053247081477 1.2081640203407544 1.2030112140027764 1.0206685100144293 1.016468514296118 1.0608570266264756 0.8413732089879821 1.0 22.95632073372426 2.640782108362663 5.172418810117477 0.9971782288242118 1.1567783268125575 0.531113638193426 0.07679521116931527 0.1948156815776517 8.132399477303936 0.025688351472728414 0.02417422767414784 437.3026492336873 -2.640782108362663 0.15960009798834573 GEASEDLCEMALDPELLLLRDDGEEEFAGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEASEDLCEMALDPELLLLRDDGEEEFAGAK 31 1 Q8N163-2;Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 110.03 9.807e-05 32603000.0 52279.0 61885.0 49168.0 56648.0 55146.0 53334.0 62476.0 58356.0 87740.0 62498.0 False True 51997.53567274294 63944.80481472753 56090.427024082746 63819.63099174969 62168.51622404986 49647.1461147316 59453.797198503096 62710.82104576376 66117.65265576515 58509.32413277018 0.8887051156965922 1.092899392746754 0.9586579208606403 1.0907600102665567 1.0625403240511921 0.8485339191762256 1.0161422658650048 1.0718090146360173 1.1300361717686234 1.0 15.836378932590712 1.77220549009642 4.571593117788119 1.0756207525641759 0.9966096393151234 0.14467021053321616 0.08145974273029499 0.36968937621075804 15.854271767220375 0.04031390273519542 0.02130345971050098 59.184160278071985 -1.77220549009642 -0.07901111324905252 GEAVLRPGLDAEPELSPEEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEAVLRPGLDAEPELSPEEQR 21 1 C9JQV0;Q9BRJ6 C9JQV0 C7orf50 Uncharacterized protein C7orf50 0 ; 246.61 2.3663999999999997e-30 661690000.0 278700.0 319060.0 308670.0 304660.0 283770.0 299760.0 290940.0 275070.0 350960.0 328370.0 False True 277199.5101664811 329679.71922415716 352128.05299226387 343229.92476250656 319906.4274634356 279038.2967591394 276866.1207012689 295597.12017715786 264470.6106230606 307413.14546829887 0.9017165149011707 1.0724320806839227 1.1454554178411869 1.1165102397935718 1.040640038265459 0.9076979981908888 0.900632015197346 0.9615630448296509 0.8603100242189656 1.0 18.22981933268747 2.81618479480718 4.683492915195125 0.924772290837318 1.067051542073142 0.4629414621410165 0.06944946075892462 0.19394544280028797 7.839576321421938 0.02192357748300388 0.023177979118569482 654.9147848064968 -2.81618479480718 0.14227925123582386 GECEESWIHFI ddPTM_BT-474_Trastuzumab_2h_R1 1 GECEESWIHFI 11 0 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 0 157.86 7.070399999999999e-05 58464000.0 103740.0 133720.0 125580.0 135750.0 128760.0 121620.0 120040.0 100070.0 125010.0 117590.0 False True 103181.4753665976 138170.7893645531 143260.57243907248 152935.93608123876 145156.8227796878 113212.69566268535 114233.20660266836 107537.73154516373 94202.96054817869 110085.30552613613 0.9372865422270238 1.2551247299009312 1.3013596297378671 1.389249322153438 1.3185849109100678 1.028408788271989 1.037678971382311 0.9768581831262887 0.8557269301106977 1.0 16.748262381491674 2.6162473769462213 4.263068538986662 0.9757379047074373 1.25218076815678 0.5420266655018571 0.12017879742495906 0.18700060791124484 5.632064320734768 0.0417986647003507 0.03912179089495912 413.2828435388546 -2.6162473769462213 0.27644286344934277 GECLYCFVTLCDGHTFSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GECLYCFVTLCDGHTFSPK 19 0 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 243.61 1.814e-24 541930000.0 893830.0 907320.0 926760.0 894750.0 821000.0 1214400.0 1116300.0 954840.0 1226800.0 1177100.0 False True 889017.7185938495 937519.5977134773 1057239.752457675 1008025.2582592164 925549.483551751 1130451.3863901081 1062300.3043198837 1026095.009379275 924471.5782777829 1101976.470233989 0.8067483676898103 0.8507619019437034 0.9594032005358384 0.9147429963229403 0.8398994974504527 1.0258398585861574 0.9639954509140467 0.9311405797633759 0.8389213411076596 1.0 20.071661988660512 4.391393149704663 4.299827168057923 0.9323557653133046 0.8154836171289814 0.36061987747362967 0.0573171327769086 0.21136836853485405 7.021505791716424 0.01396782108545313 0.04349501150777315 24625.95886558423 -4.391393149704663 -0.11687214818432312 GECQACDQLHFCR ddPTM_BT-474_Trastuzumab_2h_R1 1 GECQACDQLHFCR 13 0 Q96H79 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like 0 76.358 0.028888 200020000.0 563720.0 201500.0 168380.0 255840.0 149490.0 265760.0 184300.0 213790.0 426120.0 282720.0 False True 560684.9941551802 208206.80569067755 192086.44041480354 288229.3177681341 168526.66540335125 247388.6367317485 175384.70490562983 229744.09540362298 321108.435715462 264676.56755123014 2.11837791060463 0.7866461606971594 0.7257402579758927 1.0889869112132307 0.6367268057106402 0.9346828055863485 0.6626378244522262 0.8680182667064181 1.2132106694836484 1.0 18.0138709496855 4.740641027946581 24.988939637827887 0.8617672871405088 2.118378343462603 0.814417725707423 0.1772138780152522 69.58000518776889 835705.1214810377 0.03981006963947598 0.2627288324223074 55035.260686458 -4.740641027946581 1.2566110563220945 GEDAEES(ph)LEEEEALDPLGIMR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEDAEESLEEEEALDPLGIMR 21 0 Q53T59;F6TR53;H7BZZ1 Q53T59 HS1BP3 HCLS1-binding protein 3 1 GEDAEES(1)LEEEEALDPLGIMR;GEDAEES(1)LEEEEALDPLGIMR 236.5 5.0579e-30 101575000.0 109501.0 125654.0 115270.0 126943.0 125500.0 133598.0 118194.0 108404.0 129067.0 128805.0 True False 108911.45878270487 129836.31743055288 131499.01405519908 143013.9707842411 141481.6811032215 124362.68471586441 112476.50467507327 116493.6569443582 97260.16725919345 120584.55462449143 0.9031957626900279 1.0767242772913337 1.0905129140684395 1.186005713829573 1.17329853349631 1.0313317912326196 0.9327604602872467 0.9660744471555867 0.8065723471971039 1.0 16.879685602291104 2.3562019444101288 3.469991093368684 0.9273116058046684 1.0921984286727258 0.4349433360445938 0.0855017816142948 0.22911506879666513 5.396318745665202 0.03273155795180711 0.02646650274006241 227.09205712810166 -2.3562019444101288 0.16488682286805734 GEDEEENNLEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEDEEENNLEVR 12 0 P04843;F8WF32 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ; 185.99 2.8685e-05 811940000.0 198749.0 292140.0 280600.0 239070.0 295810.0 351500.0 266510.0 241600.0 255340.0 294230.0 False True 197678.9574670898 301863.70329764066 320106.04098107765 269336.23748760094 333479.6500967644 327201.632341999 253617.89313293176 259629.41881994173 192414.87838070502 275451.9894970233 0.7176530393846585 1.0958849992292496 1.1621119221741432 0.9777973939466194 1.2106634288817442 1.187871733798223 0.9207335681112316 0.9425577912652813 0.6985423439200986 1.0 18.07144135747822 1.9035859569345157 2.5343872074736224 0.8654511183988485 1.066477840044857 0.2127931005675857 0.1524099354332004 0.40854059931571013 4.752132681276274 0.08389702967033391 0.04294292879221116 80.09141322731895 -1.9035859569345157 0.20102672164600843 GEDIFLDMFEDEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEDIFLDMFEDEYR 14 0 Q2KHT3;Q2KHT3-2 Q2KHT3 CLEC16A Protein CLEC16A 0 ; 195.25 1.179e-07 37485000.0 36350.0 46397.0 44088.0 46356.0 41552.0 41999.0 41931.0 41816.0 47219.0 45094.0 False True 36154.29563886468 47941.296097421204 50295.207180234334 52224.66484701223 46843.400902000496 39095.707985011686 39902.637338024724 44936.52225734556 35582.51015218341 42216.06231308429 0.8564108933404514 1.1356174278377085 1.191376088258379 1.237080437765649 1.109610852727068 0.9260860876855043 0.9452003609928691 1.0644413475630603 0.8428666294903373 1.0 15.365504397686943 2.757551630688287 16.109155422711776 0.9674830205098983 1.1196892690957108 0.3195638791976403 0.1080685945685687 10.775183965418638 9138.517707985042 0.03377616662541595 0.03558782214858905 572.204976655761 -2.757551630688287 0.15220624858581244 GEDLTEEEDGGIIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GEDLTEEEDGGIIR 14 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;; 305.74 4.9836e-44 1533730000.0 1439210.0 1519890.0 1395540.0 1302550.0 1402200.0 1416930.0 1287980.0 1402410.0 1582630.0 1490460.0 False True 1431461.4532712633 1570478.6198570936 1592019.9017488693 1467452.69644654 1580761.85850946 1318980.9641944491 1225675.4868385955 1507064.955493687 1192612.0426554983 1395337.5667529951 1.0258889944476517 1.125518768559825 1.1409568119444828 1.0516829270649966 1.132888482453715 0.9452773261625638 0.878407860608806 1.080071942018078 0.8547122008839431 1.0 20.412182757304347 2.7332729183405737 24.584185288805866 0.9607333071065051 1.09716480487797 0.5311672224904309 0.0672213804346888 291.36614875990864 1354650.0646049038 0.021038817947606175 0.0203777730994911 541.0942493315753 -2.7332729183405737 0.13643149777146502 GEDLTEEEDGGIIRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEDLTEEEDGGIIRR 15 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ; 171.36 1.7445e-06 1594340000.0 446770.0 733790.0 687770.0 746200.0 703470.0 640170.0 645130.0 594890.0 685880.0 722760.0 False True 444364.63996081374 758213.7565645778 784602.0377959936 840668.8434903907 793052.7347066388 595916.554698087 613922.5972640739 639283.7125902121 516854.06432113296 676632.8380140329 0.656729344181782 1.1205689614326004 1.1595683710812177 1.2424298618994247 1.1720577101080505 0.8807088885120413 0.9073201340123868 0.9448014885983907 0.7638619281886135 1.0 19.368013669438035 2.7256106366794657 24.122242496090255 0.9007256082045466 1.0875905525040437 0.21975071797733903 0.15937176730097286 715.9263866117021 1333570.482765568 0.05209095594237737 0.04942036088258619 531.6314155564904 -2.7256106366794657 0.18686494429949707 GEDNWAELMEVNHDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEDNWAELMEVNHDDK 16 0 Q8IZ07;H0YIN8;S4R3D2 Q8IZ07 ANKRD13A Ankyrin repeat domain-containing protein 13A 0 68.164 0.049761 55286000.0 37733.0 47911.0 36038.0 44067.0 42320.0 42903.0 41897.0 32348.0 46793.0 35464.0 False True 37529.84972053041 49505.68867218888 41111.837152088665 49645.87768170872 47709.201149707835 39937.216592798795 39870.28204791733 34761.9720198157 35261.49214407589 33200.65715774204 1.1303947853266767 1.4911056861609344 1.2382838374782537 1.4953281631093205 1.4369956872550205 1.2029044004475635 1.2008883396038443 1.0470266252458675 1.0620721143121497 1.0 15.018924177411787 2.135024060050811 1.4541346775007182 1.0332350338240899 1.3626478763417198 0.60111984546358 0.11076269435734125 0.26598093991612404 1.0746691541751843 0.06598221228708277 0.03534363726871861 136.4658737017751 -2.135024060050811 0.3294128425176299 GEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 41 1 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 GEDS(0.5)AEET(0.5)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 70.835 0.0014619 321410000.0 699860.0 495510.0 441510.0 366300.0 447440.0 601520.0 593090.0 641630.0 845670.0 560530.0 True False 696092.0315217552 512002.7508078799 503670.7703262854 412673.5424424151 504418.8318153417 559938.3382257727 564399.9708761796 689511.6887311229 637265.9598974345 524756.4955061233 1.3265048407840672 0.9756958802654886 0.9598180768405717 0.7864095937381297 0.9612436170586778 1.0670441300316194 1.0755464214536699 1.313965038329053 1.2144031857724729 1.0 19.00128859393704 2.110405858509722 2.605378728116807 1.207084425100991 0.9924989051708686 0.17499847517059108 0.14767918087953916 0.36669360886580027 4.925461144100877 0.07013104951906049 0.04419471225284296 128.94540142124825 -2.110405858509722 -0.21458551993012231 GEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 41 1 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 GEDS(0.454)AEET(0.546)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 184.62 1.8996e-27 356340000.0 831820.0 606400.0 571930.0 475850.0 531290.0 828090.0 734570.0 799340.0 1042800.0 794180.0 True False 827341.5735438896 626583.6574234589 652452.7726953232 536092.5612100001 598946.6322974545 770846.0874141838 699036.0427700944 858990.8097662756 785815.9128041018 743494.752468294 1.1127739244927235 0.8427546466781274 0.8775485913374308 0.7210441760755554 0.805582864316176 1.036787529239564 0.9402030618903453 1.155342128393713 1.0569219354881898 1.0 19.503963034314122 2.721311103252576 19.313529378037988 1.048135135493447 0.8622478955242373 0.3767406337563234 0.10592093784981643 42.90366158170358 48036.09264814884 0.03515820741520038 0.03332151511478945 526.3942094936444 -2.721311103252576 -0.18588723996920964 GEDSVPDTVHHVVVPVNPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GEDSVPDTVHHVVVPVNPK 19 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ;; 108.49 0.00015838 2907620000.0 2384980.0 2450230.0 2235930.0 2244380.0 2287500.0 2510760.0 2382980.0 1549840.0 2971150.0 2412010.0 False True 2372139.5326761864 2531784.4243546845 2550729.5089480407 2528518.277878534 2578799.565925254 2337197.070893306 2267706.15353238 1665496.9307280579 2238949.8938702615 2258073.4567743437 1.0505147764611635 1.1212143771316176 1.1296043099464779 1.1197679465620753 1.1420352859596814 1.0350403189416124 1.0042658916737794 0.7375742918067949 0.9915310271033431 1.0 21.106660988119017 2.1623889757639523 2.6547443408156783 0.8809865890681003 1.1096186215988115 0.5380451741594802 0.07682191760304903 0.16693930214240676 2.370613311485026 0.03319743511976135 0.022114395496761856 145.34127836688268 -2.1623889757639523 0.22863203253071118 GEDVDQLVACIESK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEDVDQLVACIESK 14 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 182.02 3.6551e-06 20771000.0 50454.0 49617.0 45911.0 43227.0 42165.0 52241.0 52551.0 47930.0 66402.0 53076.0 False True 50182.36126996639 51268.47185089011 52374.869734434236 48699.53376783582 47534.46281846484 48629.702632086344 50008.90736568497 51506.779983608474 50038.116841213945 49688.64423935027 1.0099362145652009 1.0317945404976196 1.0540611549420509 0.9800938325716857 0.9566464037435045 0.9786884584299985 1.0064453987674125 1.036590568571367 1.0070332488884233 1.0 15.600628557866333 -0.37490497888635854 6.645064212487978 1.0000047931142295 1.0079527325752249 0.0038361821297494547 0.027904213349917648 0.0 0.0 0.030008318133060454 0.007073028414630096 0.42178877827183653 0.37490497888635854 0.007947939460995368 GEDVPS(ph)EEEEEEENGFEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEDVPSEEEEEEENGFEDR 19 0 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 GEDVPS(1)EEEEEEENGFEDR;GEDVPS(1)EEEEEEENGFEDR 307.89 2.0064999999999998e-61 2744500000.0 466950.0 452730.0 418400.0 437410.0 442170.0 554230.0 498340.0 422640.0 564130.0 497280.0 True False 464435.9930830226 467798.84436893574 477307.08320200635 492786.0611513421 498477.7285530787 515917.38461708685 474233.3903563287 454179.5429224347 425107.7204547155 465543.16465717205 0.9976217638702423 1.0048452643772028 1.0252692326682473 1.0585185189309607 1.0707443828976844 1.1082052616904183 1.0186668527408327 0.9755906163006268 0.9131435121977713 1.0 18.828555413541594 1.730479367501847 3.1443031529536136 0.954625436087946 1.0442134761736963 0.497084373810991 0.036378380637907486 0.185398201535691 3.928010269268299 0.022476608202035887 0.010538766607968047 53.76248909877592 -1.730479367501847 0.08958804008575028 GEEDTGQEEGGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEEDTGQEEGGSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 134.99 0.00020744 43107000.0 49865.0 66878.0 50800.0 56887.0 66405.0 54468.0 61676.0 55130.0 56194.0 67601.0 False True 49596.532380522316 69103.99380139526 57952.198438484476 64088.88836724449 74861.2831367285 50702.75536388049 58692.49625479986 59244.08054446762 42345.741661021915 63286.646303872185 0.7836808438605437 1.0919206157581958 0.9157097400962876 1.0126763244732597 1.182892245186772 0.8011604078438621 0.9274072759834133 0.9361229264702368 0.6691102173071066 1.0 15.9496134977882 2.689300034475484 24.999948421557885 0.874045609237524 0.9989421243074066 0.20353636659943664 0.1287683003041786 634.8970197296768 322212.1190702748 0.040069580989483065 0.03777801583423707 488.9900638638601 -2.689300034475484 0.12489651506988264 GEEDTGQEEGGSRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEEDTGQEEGGSRR 14 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 104.17 0.0017212 102420000.0 141480.0 165450.0 142050.0 166430.0 165120.0 168940.0 162780.0 148020.0 162350.0 169670.0 False True 140718.2873999058 170956.903233363 162049.40527926595 187500.02093554774 186147.05325708305 157261.5754419837 154905.70952001293 159066.00403033022 122341.01787854412 158841.51533820486 0.8859037078580424 1.0762734343686038 1.0201955385166834 1.1804220108094743 1.1719042900134724 0.990053356687909 0.975221806403623 1.001413287273465 0.7702080757543518 1.0 17.277228503698694 1.8937657522054678 1.449259775277599 0.905998875877296 1.065733908537732 0.2769645523437382 0.09856073310649756 0.5255866846009347 2.0601242508680984 0.07228195641985273 0.03160141784624089 78.30071939662932 -1.8937657522054678 0.15973503266043598 GEEDWLYER ddPTM_BT-474_Trastuzumab_2h_R1 4 GEEDWLYER 9 0 J3QQZ9;Q9NVS9-3;Q9NVS9;Q9NVS9-4 J3QQZ9 PNPO Pyridoxine-5-phosphate oxidase 0 ;;; 172.25 0.00013106 1579790000.0 802480.0 1048400.0 928680.0 945060.0 893480.0 926500.0 924470.0 844370.0 956860.0 947520.0 False True 798159.5368439095 1083295.360228817 1059430.0717687346 1064704.4991008143 1007259.3819291334 862453.2357464066 879749.8542816455 907381.1770239822 721054.6742671012 887048.4623873148 0.899792481118587 1.221235824380263 1.1943316703548406 1.2002777122631763 1.1355178715019638 0.9722729617559845 0.9917720300353979 1.0229217630138785 0.8128695385216336 1.0 19.758653400311438 2.7425075028279866 5.788578268455535 0.9685735181424625 1.1433887064328898 0.41634188860658794 0.09998104409841278 0.15912994830288957 22.130509199408422 0.031144793695885603 0.031325290201079006 552.7229566484124 -2.7425075028279866 0.1748151882904273 GEEGHDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEEGHDPK 8 0 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 90.657 0.013041 957490000.0 3280800.0 2700800.0 2279700.0 2005930.0 2170600.0 1827760.0 2611000.0 2682000.0 3626500.0 2827500.0 False True 3263136.53733115 2790694.495331922 2600661.9444923806 2259880.5323273633 2447013.043845838 1701411.2532842455 2484695.9550113874 2882144.458920045 2732797.6676103533 2647046.529255458 1.2327461951524445 1.0542672614511495 0.9824768532587433 0.8537366107285639 0.9244314434223851 0.6427583476452172 0.9386672759810778 1.0888151859312851 1.0323950249484337 1.0 21.33595212378579 4.61302277873276 1.723102958210591 0.9289593315805279 1.2906273974496114 0.4038114487059521 0.11416389194321147 0.8013203359469657 2.882158774604107 0.033653797438755094 0.43990239539164416 41022.5618743949 -4.61302277873276 0.3616680658690835 GEEGHDPKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEEGHDPKEPEQLR 14 1 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 140.74 5.9276e-06 3896300000.0 5336400.0 5015100.0 4704000.0 4503100.0 4391600.0 5606700.0 5403300.0 4867000.0 7702300.0 5583000.0 False True 5307669.41532978 5182024.571808033 5366282.312099031 5073191.998286757 4950844.228947473 5219122.025752158 5141921.736389516 5230200.254125235 5804171.370532244 5226688.16015322 1.0154937988828066 0.991454705737815 1.0267079549551161 0.9706322326561063 0.9472239546815318 0.9985524037078116 0.9837820009217425 1.0006719539915907 1.1104874047741342 1.0 22.317465655688917 1.4076807940177027 10.096038870269883 1.055755051221483 0.990373058299775 0.3850892701972646 0.032279169155889034 0.3604829675983013 49.18601978630512 0.020064502437775508 0.007478899064779839 25.56706019934741 -1.4076807940177027 -0.0653819929217081 GEEGHDPKEPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEEGHDPKEPEQLRK 15 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 177.84 4.4221e-07 666210000.0 850700.0 794030.0 755180.0 781720.0 786090.0 961500.0 1009620.0 861120.0 1495800.0 1045030.0 False True 846119.9257216549 820458.8085487295 861502.7798577702 880685.6718484433 886193.9019795335 895033.7681275446 960780.8234770579 925381.1470787595 1127180.1326931105 978335.2907048037 0.8648567968064411 0.8386274279829585 0.8805802959812826 0.9001879828069859 0.905818189734431 0.9148538099681064 0.9820567985285501 0.9458732153187529 1.1521409310309938 1.0 19.899969458364875 2.03517916663569 0.8300329002818823 1.0543094793718542 0.8678307482353588 0.6833069884666542 0.04815545954912644 0.353454828482165 0.4534253180216235 0.039181037109657986 0.02018338126738595 108.43741764459176 -2.03517916663569 -0.18647873113649538 GEEGRPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEEGRPGK 8 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 71.37899999999998 0.044591000000000006 295460000.0 636760.0 704070.0 634090.0 572740.0 571820.0 479780.0 635970.0 598540.0 749180.0 661870.0 False True 633331.754910686 727504.5443306981 723364.3603909172 645248.8252756455 644637.8875573245 446613.93788063794 605205.7014586721 643206.094124536 564554.6274976762 619628.8899445835 1.0221146321426815 1.1740971993668055 1.1674154838965163 1.0413472253260387 1.0403612517405016 0.7207764923946345 0.9767228598924731 1.0380505243744544 0.9111173424276054 1.0 19.241044885201035 3.2422034766635255 2.5679773192666424 0.9423652079892846 1.120738582480819 0.42685806067130994 0.09246523671001458 0.27545837835520687 3.7209160554939085 0.029079052092499193 0.03902995095801197 1746.6403012326184 -3.2422034766635255 0.17837337449153434 GEEGRPGKK ddPTM_BT-474_Trastuzumab_2h_R1 3 GEEGRPGKK 9 2 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;; 81.97200000000002 0.01112 478129000.0 677390.0 725030.0 623290.0 606180.0 643280.0 576430.0 820860.0 774780.0 1143340.0 875260.0 False True 673743.0075051048 749162.1852601097 711043.8142662004 682922.3258469641 725197.8949807198 536582.7508702655 781151.8658102839 832598.0178531233 861579.1769710786 819400.1574522135 0.8222392946567095 0.9142812317604418 0.8677613834943249 0.8334417801070431 0.8850350935196306 0.6548482398864544 0.9533215959332298 1.0161067340308383 1.051475483785619 1.0 19.64420864447678 2.011473452446694 24.999075694266487 1.0144163520763596 0.8350629155595866 0.6367180944922897 0.06638555603432789 140.63249047359793 306417.61363184056 0.024910598918632065 0.018382645629374205 102.67706653119747 -2.011473452446694 -0.17935343651677305 GEEGS(ph)DDDETENGPKPK ddPTM_BT-474_Trastuzumab_2h_R1 9 GEEGSDDDETENGPKPK 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK 316.52 1.5840999999999997e-58 16203530000.0 9549722.0 6294587.0 5518529.0 5009372.0 5378348.0 8259486.0 8193027.0 8035541.0 12410330.0 7925615.0 True False 9498307.357825851 6504098.523136802 6295489.915286049 5643557.981577513 6063248.7378338585 7688527.173558716 7796698.983607471 8635193.87307041 9351970.46140211 7419795.465239614 1.2801306184683507 0.8765873066996678 0.848472164061566 0.7606082954734468 0.8171719511998775 1.036218209730721 1.0507970226583172 1.163804839840224 1.2604081211152496 1.0 22.822947987254945 2.283176187099752 2.0476889131651177 1.1486273019414646 0.9047405657883303 0.29124695172484516 0.14703871652964876 0.3739660008852635 3.196122990667358 0.06905682442058747 0.04758814467069653 191.9447275222597 -2.283176187099752 -0.24388673615313428 GEEHCGHLIEAHK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEEHCGHLIEAHK 13 0 H7C4E5;C9J8T6;Q14061 H7C4E5 COX17 Cytochrome c oxidase copper chaperone 0 ;;; 200.21 3.883e-08 2255410000.0 2959170.0 2910230.0 3056930.0 2488900.0 2770080.0 4214720.0 3212380.0 257717.0 3697730.0 1520830.0 False True 2943238.1575146965 3007095.2462788145 3487319.1726881173 2803994.4848073325 3122833.2684494946 3923366.3267836957 3056984.90691669 276949.1512004092 2786473.988543449 1423769.3273519312 2.0672155952318665 2.1120663217767945 2.449356862585446 1.9694162747714774 2.1933561908217625 2.7556193629207937 2.1471068720116175 0.19451827334664315 1.9571105620922542 1.0 20.44128399565477 1.8552373039282348 8.390729258917569 0.9907551174538628 2.258410712759379 0.5982241870839043 0.4472315271576778 0.17667114890676233 11.628369474403213 0.17910954997631534 0.112212654207648 71.65348268429281 -1.8552373039282348 1.2676555953055164 GEEILSGAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEEILSGAQR 10 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 107.9 0.00517 115680000.0 79494.0 99914.0 104600.0 92503.0 90402.0 122090.0 128230.0 94282.0 122670.0 129480.0 False True 79066.01313661363 103239.57709071152 119326.77080050159 104213.87031545368 101914.15884536589 113650.2056689464 122027.02501383019 101317.80159429525 92439.62219378502 121216.47554659477 0.6522711766703794 0.8516959153050688 0.9844104958705321 0.8597335456713109 0.8407616075769403 0.9375805158207231 1.0066867928932965 0.8358418369898025 0.7625994880394941 1.0 16.887226275343057 4.706939978434994 3.710879994782163 0.8982781960380889 0.633482325504508 0.4895416893275434 0.07646538433011349 0.2005598806481109 5.152050415646147 0.01845302995696005 0.13801525665919223 50926.0483969999 -4.706939978434994 -0.2647958705335809 GEEKPAGHRT(ph)SPVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEEKPAGHRTSPVAK 15 2 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 GEEKPAGHRT(0.893)S(0.107)PVAK;GEEKPAGHRT(0.924)S(0.076)PVAK 144.75 0.00019929 2299640000.0 3965970.0 3487720.0 3056550.0 3084530.0 2889670.0 4550550.0 4510240.0 3894690.0 6055890.0 4434360.0 True False 3944617.6581806894 3603806.6518287384 3486885.6719911345 3475031.181736016 3257652.3460840327 4235981.189342479 4292062.460410018 4185331.544635099 4563497.054268535 4151355.348353397 0.9501999533104993 0.8681036310847637 0.8399390992568682 0.8370835281817925 0.7847201871976957 1.0203851113402393 1.0338942586816693 1.0081843623180025 1.0992788309674841 1.0 21.985150998583272 2.694371106629128 9.915321888918703 1.0310753391333078 0.8547732955675875 0.7873969075158933 0.04581077881326665 0.2758909730520696 60.80443347754882 0.015010576147396742 0.01417787163029561 494.7332582576433 -2.694371106629128 -0.17630204356572032 GEENLAGWRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GEENLAGWRPR 11 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8;A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A3B3ITW6;A0A087WWA3 KIF1A;KIF1B;KIF1Bbeta Kinesin-like protein KIF1A;Kinesin-like protein;Kinesin-like protein KIF1B 0 ;;; 164.9 2.0272e-05 1623650000.0 974790.0 1301690.0 1101770.0 1223960.0 1153920.0 1172650.0 1119920.0 1027010.0 1233220.0 1140880.0 False True 969541.8389493497 1345015.9647617775 1256889.6392434845 1378913.2105045535 1300864.8721803136 1091587.4656211806 1065745.1910901405 1103650.7012511103 929309.4553013754 1068068.0616434908 0.9077528612338303 1.2592979914520923 1.1767879635961067 1.291034963055397 1.21796065147628 1.0220205105108182 0.9978251661698637 1.0333149551844727 0.8700844905627076 1.0 20.02657215367817 2.64271087641784 4.557171429804803 0.9877860452579942 1.1822461650004052 0.43800671819314096 0.10534147152437474 0.2137660171283142 7.531937693111223 0.03423653408522957 0.03224024150640581 439.2490960533073 -2.64271087641784 0.19446011974241106 GEES(ph)S(ph)EEEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEESSEEEEK 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 GEES(1)S(1)EEEEK 108.68 0.0041986 0.0 713080.0 559760.0 476270.0 420420.0 467930.0 550610.0 554390.0 593540.0 856920.0 604520.0 True False 709240.8565106351 578391.2732179346 543324.6761869487 473645.1288933668 527518.1118615966 512547.6266965236 527572.0377245356 637832.9687350504 645743.5481397109 565939.0160443888 1.253210746040889 1.0220028250757132 0.9600410305415904 0.8369190238974741 0.9321112291367827 0.905658758569002 0.9322065147795996 1.12703480525722 1.1410126000025818 1.0 19.110287075213993 -0.07788793022636109 7.381055678931292 0.999999876216304 1.0056450624577746 0.0 0.12081477297466403 0.0 6.440167794993225e-18 0.12305328429684775 0.029003937281734955 0.8358186735727519 0.07788793022636109 0.00564518624147059 GEES(ph)S(ph)EEEEKGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEESSEEEEKGYK 13 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 GEES(0.999)S(0.999)EEEEKGY(0.001)K;GEES(1)S(1)EEEEKGYK 181.75 7.662e-06 408110000.0 2863700.0 1749990.0 1451060.0 1481930.0 1647620.0 2533710.0 2414780.0 2436120.0 4110500.0 2471190.0 True False 2848282.1573869823 1808237.3592587055 1655356.6351603803 1669542.186054295 1857434.6407911535 2358560.591411792 2297967.866044579 2617915.6447667093 3097522.3528780807 2313476.5385077978 1.2311696747199936 0.781610415822512 0.7155277382791582 0.7216594412196446 0.8028759357936721 1.0194875773121408 0.9932963778948795 1.1315937729177388 1.3389037240360326 1.0 21.141631037602753 2.1864337422668134 1.4539458341240639 1.168595115622407 0.8370702101291002 0.3815654285402468 0.16193543566391605 0.40531726260749795 1.6589869155880517 0.09840530321246238 0.0553325759439685 153.61504140957703 -2.1864337422668134 -0.3315249054933068 GEFGDVMLGDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEFGDVMLGDYR 12 0 P41240 P41240 CSK Tyrosine-protein kinase CSK 0 ; 117.52 0.0016861 203181000.0 231251.0 260813.0 242033.0 273527.0 238133.0 246370.0 257058.0 212015.0 307554.0 258051.0 False True 230005.97031040146 269494.0030402118 276109.1426114511 308155.49015464523 268457.82602512697 229339.02179259816 244623.1224830783 227836.63589035586 231761.43771245936 241581.9642514238 0.9520825406942434 1.1155385869772085 1.1429211757053748 1.2755732453352178 1.1112494546394713 0.9493217860995453 1.0125885152108849 0.943102837152352 0.9593490906103245 1.0 17.88215322605223 2.7802500030666932 6.184766545660517 0.9705005687696965 1.1301298799725084 0.48105118266101854 0.07578945779819922 0.17924344156732264 18.97166871286988 0.024337439840740816 0.025540527272005186 602.906551365641 -2.7802500030666932 0.15962931120281187 GEFGVEDDRPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEFGVEDDRPAR 12 1 Q96CN9 Q96CN9 GCC1 GRIP and coiled-coil domain-containing protein 1 0 91.858 0.0036715 0.0 134810.0 171890.0 168100.0 157250.0 149500.0 142860.0 144780.0 133020.0 180140.0 155010.0 False True 134084.19793879904 177611.2547403009 191767.01884860694 177157.83387679435 168537.9388440766 132984.42445626738 137776.4382866904 142946.6278618736 135746.91075233114 145117.12908926225 0.9239722338795939 1.2239165414515014 1.3214637035070484 1.220792024956776 1.1613924551967127 0.9163937110033924 0.9494154077561956 0.9850431079982738 0.9354299633975846 1.0 17.1468582942799 2.789666029866035 6.007923445373865 0.9581450898132856 1.1860563046003878 0.5422471827247135 0.09741610215414148 0.16379188734893144 14.03359077605145 0.030634314483868715 0.032271300210185594 616.1210258684765 -2.789666029866035 0.2279112147871022 GEFKDEEETVTTK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEFKDEEETVTTK 13 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ;;; 190.44 4.0262e-06 2690140000.0 2100690.0 1659330.0 1413140.0 1360070.0 1472710.0 2127440.0 2039340.0 1931660.0 3073360.0 1997090.0 False True 2089380.1184485976 1714559.7959638322 1612097.8287669274 1532254.7225488822 1660250.889063945 1980375.0802550854 1940689.3331646612 2075810.2779707306 2315971.608914089 1869634.0064052287 1.1175342934983719 0.9170563811365627 0.8622531593049755 0.8195479528610895 0.8880084997256401 1.0592314182724885 1.0380049392105632 1.110276273783616 1.2387299337622981 1.0 20.834324449692552 2.5162134516633565 2.2348058962228543 1.1077323627678708 0.9122220559383972 0.44106773217598083 0.09415896934451504 0.2817277483409389 2.8260597461698245 0.03755621112615685 0.03208201191013751 328.2565885058725 -2.5162134516633565 -0.19551030682947357 GEFSAS(ph)PMLK ddPTM_BT-474_Trastuzumab_2h_R1 18 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEFS(0.018)AS(0.982)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFS(0.1)AS(0.9)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFS(0.001)AS(0.999)PMLK;GEFS(0.02)AS(0.98)PMLK;GEFS(0.051)AS(0.949)PMLK;GEFSAS(1)PMLK;GEFS(0.134)AS(0.866)PMLK;GEFSAS(1)PMLK;GEFS(0.036)AS(0.964)PMLK;GEFS(0.031)AS(0.969)PMLK 237.76 3.6642e-12 65769935700.0 46028760.0 46594559.0 40878781.0 40549760.0 40725130.0 48916732.0 49465127.0 47471042.0 64928601.0 49982215.0 True False 45780946.270435944 48145430.72930929 46634158.04006595 45683355.45833946 45911233.9087429 45535233.45444125 47072309.831874594 51013572.20710691 48927817.28222894 46792307.24677289 0.9783861699530386 1.0289176482664193 0.9966201878895842 0.9763005533669231 0.9811705515314003 0.9731350329509914 1.005983944831466 1.0902127979727938 1.045638058072106 1.0 25.479768031431046 1.9338836741165506 7.478399232979138 1.0539230920147564 0.9902254013422023 0.4819289969429692 0.025576285552109574 0.2057629487844062 20.63974823301588 0.01070792543234108 0.006696431551222996 85.8783465334741 -1.9338836741165506 -0.06369769067255415 GEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GEGDAPFSEPGTTSTQRPS(0.999)S(0.999)PET(0.001)ATK;GEGDAPFSEPGTTSTQRPS(0.999)S(0.996)PET(0.005)ATK;GEGDAPFSEPGTTSTQRPS(0.996)S(0.932)PET(0.065)AT(0.007)K;GEGDAPFSEPGTTSTQRPS(0.999)S(0.997)PET(0.004)ATK 176.87 1.5162e-17 2323620000.0 4462650.0 3934280.0 3637150.0 3444500.0 3693800.0 4622960.0 4490070.0 4446310.0 5496360.0 4785630.0 True False 4438623.588247029 4065230.1314775147 4149229.1053254637 3880573.3468274567 4164183.535132107 4303385.65647729 4272868.160366904 4778116.230104699 4141855.725450666 4480206.99621603 0.9907184181435987 0.907375515218604 0.9261244198828069 0.8661593873017426 0.9294623080248668 0.9605327745150877 0.9537211481468951 1.0664945245030604 0.9244786522026472 1.0 22.095133959088187 2.29413106953994 1.993718827335717 1.0028932955048973 0.9212256525090342 0.2992670421628427 0.04451613183645857 0.3342547615471144 2.7075010963738584 0.020393930031561425 0.014083921391452389 196.8480284995255 -2.29413106953994 -0.08166764299586304 GEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_BT-474_Trastuzumab_2h_R1 8 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEGDAPFSEPGTTSTQRPS(0.266)S(0.733)PETATK;GEGDAPFSEPGTTSTQRPS(0.01)S(0.99)PETATK;GEGDAPFSEPGTTSTQRPS(0.033)S(0.966)PETATK;GEGDAPFSEPGTTSTQRPS(0.064)S(0.935)PETATK;GEGDAPFSEPGTTSTQRPS(0.027)S(0.97)PET(0.003)ATK;GEGDAPFSEPGTTSTQRPS(0.048)S(0.951)PETATK;GEGDAPFSEPGTTSTQRPS(0.052)S(0.948)PETATK;GEGDAPFSEPGTTSTQRPS(0.008)S(0.992)PETATK 273.43 8.980999999999996e-61 77124730000.0 27459000.0 26333190.0 24902030.0 23586140.0 23693460.0 29803940.0 29075440.0 28081570.0 35513050.0 30223710.0 True False 27311163.794981692 27209674.310400512 28408019.37167507 26572142.905658614 26710681.688860066 27743663.778728288 27668949.888232976 30177159.34872315 26761334.67798972 28294806.95198007 0.9652359120644383 0.9616490530074594 1.0040011730734597 0.9391173069586571 0.9440135687863689 0.9805214018887939 0.9778808505458527 1.0665264265608059 0.945803755558649 1.0 24.754033958537285 1.9795455630149805 24.22344601758489 1.0141773303240067 0.9662832664673499 0.20073841703160855 0.03240098293845425 605.2518994181818 716776.8865504803 0.012900786411068534 0.008421273732906246 95.39938236776102 -1.9795455630149805 -0.04789406385665684 GEGDAPFSEPGTTSTQRPSS(ph)PETATKQPS(ph)SPYEDKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDK 37 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GEGDAPFS(0.001)EPGT(0.064)T(0.064)S(0.064)T(0.068)QRPS(0.355)S(0.381)PET(0.038)AT(0.034)KQPS(0.453)S(0.422)PY(0.056)EDKDK 69.973 0.002143 234020000.0 114490.0 101580.0 86061.0 86966.0 86131.0 136740.0 135220.0 118250.0 284770.0 123480.0 True False 113873.5985610347 104961.02889359326 98177.64074437828 97975.886683175 97099.27231156632 127287.48565133693 128678.89200943716 127074.41546133313 214592.24922250118 115599.40068345332 0.9850708384972998 0.9079720852620059 0.849291952760368 0.8475466663660575 0.8399634577471035 1.101108525639239 1.1131449752217963 1.0992653483498753 1.8563439598629123 1.0 16.81877439274901 1.9172861701072519 1.315836434270391 1.37298159115108 0.8962365737556458 0.4243247866744979 0.21600533264334365 0.3983254202853536 1.2790291086257224 0.154237277798395 0.06780118818263736 82.65824309764879 -1.9172861701072519 -0.4767450173954343 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76;Q9UK76-3 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(1)PVAPAPVPSR;GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(1)PVAPAPVPSR 294.76 1.1343999999999993e-96 5497440000.0 1590560.0 1506110.0 1421100.0 1295420.0 1130460.0 1604090.0 1643940.0 1480830.0 1708790.0 1558450.0 True False 1581996.6016878288 1556239.9608872784 1621178.5275773664 1459420.039177595 1274417.380238627 1493203.0339216997 1564416.3417393444 1591337.0541023766 1287681.6011128896 1458988.3867438291 1.0843106196468975 1.0666568528077838 1.1111661630121081 1.0002958573472467 0.8734938480784431 1.0234509386700676 1.0722609966970398 1.0907126256528492 0.8825852301585059 1.0 20.47653696906129 3.727688744948529 23.605589219808262 1.0023275437101455 1.0853057748653068 0.28957200177105824 0.06716563904271174 506.8280839911261 1100454.1904245713 0.01938087720400776 0.03039504350734554 5341.813790582215 -3.727688744948529 0.08297823115516123 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76;Q9UK76-3 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 0 273.1 6.724299999999997e-81 883470000.0 195250.0 172650.0 173900.0 146260.0 167580.0 222830.0 209090.0 213980.0 239130.0 224590.0 False True 194198.79569431435 178396.55088087087 198383.60843410337 164776.5010036244 188920.31967552102 207426.28658539857 198975.5178986332 229948.27416842326 180199.6156778334 210256.4739188272 0.9236281388856917 0.8484711436269194 0.9435315105241062 0.7836928772392472 0.8985231995684312 0.9865393570020523 0.9463466888322821 1.0936560947806935 0.8570466931134891 1.0 17.681790697018517 2.785466687359403 4.0866823521470295 0.989822471225252 0.8742016103333895 0.3306324307364875 0.06830547085253565 0.2270359140510827 8.172914426053092 0.021078309947649945 0.021886644171061717 610.1922499372753 -2.785466687359403 -0.11562086089186252 GEGERPAQNEK ddPTM_BT-474_Trastuzumab_2h_R1 6 GEGERPAQNEK 11 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;;;; 215.72 1.1497999999999998e-11 20353230000.0 9259710.0 8745520.0 8478440.0 8021860.0 7776710.0 8574770.0 9353190.0 8848610.0 11154510.0 9653730.0 False True 9209856.750210501 9036609.346421525 9672130.656078434 9037426.653500175 8767027.922328565 7982016.332737422 8900740.467044424 9508938.210531147 8405630.473276263 9037620.686425934 1.019057677873476 0.9998880966529247 1.0702076344723677 0.9999785305300487 0.970059291766495 0.8831988650205271 0.9848543965131114 1.0521506202194466 0.9300711730357428 1.0 23.107511576953147 3.481126114509053 6.967359600167272 0.9757710117542258 1.0281798361299423 0.2608497717612871 0.044549680461483776 0.22552992683863088 63.85006371202531 0.013351967590938756 0.019202229375606332 3027.7925392770044 -3.481126114509053 0.05240882437571659 GEGGS(ph)EDGS(ph)EDGLPEGIHLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 GEGGSEDGSEDGLPEGIHLDK 21 0 O75362 O75362 ZNF217 Zinc finger protein 217 2 GEGGS(1)EDGS(1)EDGLPEGIHLDK;GEGGS(1)EDGS(1)EDGLPEGIHLDK;GEGGS(1)EDGS(1)EDGLPEGIHLDK 166.49 7.0464e-12 752550000.0 1414350.0 1139550.0 966030.0 868490.0 963500.0 1249390.0 1140730.0 1132590.0 1350690.0 1216050.0 True False 1406735.2967490584 1177479.2328774778 1102038.6271167158 978440.7449517138 1086196.013888078 1163022.61004771 1085548.53188822 1217109.6169754863 1017830.5478187297 1138440.647887216 1.2356685430722798 1.0342912782170173 0.9680246652839942 0.8594569657781992 0.9541086010095506 1.0215926602815129 0.9535398563841196 1.0691023895134706 0.8940567518453233 1.0 20.11862764847477 4.716435754776624 2.5409213390370393 0.9703636812467267 1.28497503303379 0.6739074607151736 0.05659109712258311 0.2909577988198678 2.481142607723192 0.014741108150996647 0.19275781307182913 52051.80028290379 -4.716435754776624 0.31461135178706323 GEGGTTNPHIFPEGSEPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEGGTTNPHIFPEGSEPK 18 0 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5H3F0;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ;;; 202.16 1.3236e-15 4374130000.0 4830900.0 4582000.0 4338200.0 4185200.0 4260900.0 5127700.0 5271000.0 4732800.0 6595300.0 5481900.0 False True 4804890.971163442 4734509.100122509 4948980.851689626 4715045.890881777 4803500.35866706 4773234.168307446 5016021.592824599 5085985.5686714435 4969976.687492219 5132040.448709284 0.9362535270687276 0.9225393189005837 0.9643300556865843 0.9187468294540855 0.9359825602846032 0.9300850638283495 0.9773932304228303 0.9910260099276063 0.9684211839643968 1.0 22.291101110547235 2.1823029088901267 5.028013212198254 0.984976082195944 0.9347420847048087 0.7606884371424629 0.013654246819603479 0.091864661295343 4.774322125169441 0.004943820634388521 0.003658237375293802 152.1608441268112 -2.1823029088901267 -0.05023399749113533 GEGLY(ph)ADPYGLLHEGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GEGLYADPYGLLHEGR 16 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 GEGLY(1)ADPYGLLHEGR;GEGLY(1)ADPYGLLHEGR;GEGLY(1)ADPYGLLHEGR;GEGLY(1)ADPYGLLHEGR 224.67 4.4031e-14 1088200000.0 1107590.0 1401240.0 1264550.0 1237610.0 1383160.0 1394890.0 1127180.0 1054050.0 1517220.0 1169290.0 True False 1101626.8585048176 1447879.4263325327 1442587.6483343604 1394291.2991049883 1559297.22736838 1298464.5375178668 1072653.997154246 1132708.5633574484 1143321.460706404 1094664.9111204655 1.0063598890524645 1.3226690758275312 1.3178349225223378 1.273715166112189 1.4244516395180065 1.1861753531396182 0.9798925554819422 1.0347536966340163 1.0444488072026856 1.0 20.06205788202827 2.3933236450116215 4.57398120651862 1.0196384010900283 1.2777358021274356 0.5832872383240256 0.10116498522134913 0.14525581877355323 5.550487336541455 0.03547478718434172 0.029461898559785225 247.3566810236742 -2.3933236450116215 0.2580974010374073 GEGLYADPYGLLHEGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GEGLYADPYGLLHEGR 16 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 ;;;;; 193.77 3.2097000000000003e-10 3718250000.0 3451530.0 4516010.0 4029380.0 4565680.0 4323860.0 4061020.0 4038990.0 3752580.0 4869190.0 3949080.0 False True 3432947.3459810354 4666322.662864306 4596681.680001196 5143694.619870277 4874477.941473905 3780291.2460128134 3843608.6232598475 4032616.574815139 3669243.3683032254 3697046.3334225165 0.9285648694597254 1.2621758674429402 1.2433389428868338 1.39129839227861 1.318478996978485 1.0225165997617438 1.0396430762883222 1.0907671181610459 0.9924796817210693 1.0 21.817941693612116 2.7274663562238315 24.355716117614865 1.040144531962147 1.240465800213132 0.4245719663522488 0.11547964244544343 521.1338153489796 1144065.1902746018 0.038103813556757474 0.036246221421451584 533.9079113768779 -2.7274663562238315 0.20032126825098495 GEGPAIPGDT(ph)PPPTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEGPAIPGDTPPPTPR 16 0 O75145-2;O75145 O75145-2 PPFIA3 Liprin-alpha-3 1 GEGPAIPGDT(1)PPPTPR;GEGPAIPGDT(1)PPPTPR 257.54 1.2581e-25 664870000.0 670760.0 793620.0 714670.0 747690.0 718940.0 782480.0 708490.0 617070.0 716400.0 760890.0 True False 667148.7026884427 820035.16194658 815289.3239770017 842347.4773376178 810492.7475087646 728388.9993597923 674217.6320053692 663118.8968179702 539852.8192681799 712329.3487692971 0.93657337556158 1.1512022681128722 1.144539847172646 1.1825253006814265 1.137806197244387 1.022545260304439 0.94649705669186 0.9309161527089279 0.7578696851405776 1.0 19.44218490660516 2.2993673758131683 1.7784536640703117 0.8919987728420528 1.11842710885539 0.5590994145974854 0.08462421322938798 0.25135064261825335 1.6083422168642036 0.04118791426361499 0.0275670937349811 199.2357990009802 -2.2993673758131683 0.22642833601333734 GEGPDVHMTLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEGPDVHMTLPK 12 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 140.24 5.951e-05 771760000.0 1581220.0 1932170.0 1870250.0 1798230.0 1783990.0 2508800.0 2163400.0 1902980.0 2606200.0 2277600.0 False True 1572706.8872100583 1996481.1104285708 2133564.94349558 2025885.7336233223 2011170.551962839 2335372.5610799645 2058748.077009435 2044990.0307366403 1963936.931290801 2132241.6180485385 0.7375838056521121 0.9363296793051915 1.0006206264036122 0.9501201535862738 0.9432188805148144 1.0952663813106391 0.9655322640656616 0.9590798779212685 0.921066784677164 1.0 21.023939497763514 4.729535223197247 3.0933989892371336 0.9778897334390299 0.7028974895258759 0.7169906593889808 0.04535048664520771 0.184148837818592 2.7123037232233878 0.011170062382995252 0.12235752188331137 53645.73787345625 -4.729535223197247 -0.2749922439131539 GEGPGEAGGPLT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEGPGEAGGPLTPR 14 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 GEGPGEAGGPLT(1)PR;GEGPGEAGGPLT(1)PR 191.91 4.8547e-06 1180530000.0 723600.0 796370.0 773100.0 869690.0 720820.0 884470.0 672370.0 716510.0 903520.0 722920.0 True False 719704.2179995186 822876.6940341685 881945.7600943383 979792.664828676 812612.1543651327 823328.6707184293 639844.8943971689 769979.6145640583 680859.6025477186 676782.6266770503 1.063420054875241 1.2158655698276841 1.3031447991279312 1.447721360164609 1.2006988984853153 1.2165334012205788 0.9454215713821693 1.1377059401548144 1.0060240551544386 1.0 19.368333008721258 2.365315981284107 6.026095782474847 1.0424926880885512 1.2539824949782266 0.5258037437234437 0.10121103947638972 0.18418669372277266 9.084535527980917 0.03702767767296115 0.03080022331682336 231.90813391081974 -2.365315981284107 0.21148980688967534 GEGQLGPAER ddPTM_BT-474_Trastuzumab_2h_R1 1 GEGQLGPAER 10 0 P13639 P13639 EEF2 Elongation factor 2 0 128.51 0.007795100000000002 0.0 775810.0 743570.0 654140.0 678120.0 659590.0 844430.0 829400.0 753170.0 1213800.0 777320.0 False True 771633.1251605947 768319.2779524429 746237.2261131929 763969.9224707908 743584.8768037754 786056.5416744072 789278.7533843154 809375.3699197652 914675.2540867081 727710.7721028668 1.0603568818018254 1.0558030846956266 1.0254585402890082 1.0498263207828378 1.0218137552849977 1.080177141535144 1.0846050156761258 1.1122212298450826 1.2569214159680084 1.0 19.473005641120128 2.038147902933122 1.73210285874381 1.135065162139476 1.0446758412049946 0.23848265784650025 0.05964984697006397 0.448445604966925 2.5294596364451314 0.03403585905161609 0.017502502623928703 109.18120996755334 -2.038147902933122 -0.09038932093448149 GEGSDSKES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEGSDSKESPK 11 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 GEGSDS(0.007)KES(0.993)PK;GEGS(0.008)DS(0.331)KES(0.661)PK 89.23100000000002 0.008096800000000001 0.0 2763400.0 1671350.0 1382880.0 1333870.0 1364680.0 1430940.0 2056000.0 2136930.0 3506100.0 2026050.0 True False 2748522.161442601 1726979.8743975912 1577577.483791564 1502737.8052352273 1538463.9089079245 1332022.485870441 1956543.425317278 2296398.567710673 2642068.63433301 1896745.7544113256 1.4490725259567712 0.9104962382971444 0.8317284908230524 0.7922716061128695 0.8111070792328741 0.702267282144964 1.0315264556500938 1.210704472315207 1.3929482262914055 1.0 20.855094877787707 1.8711143440335354 3.5211249916518104 1.2231911514918758 0.8999189165908319 0.2596809257907504 0.21137611972222758 0.2989137951272118 6.210434622051789 0.10796515285274645 0.058518716566752005 74.32147908330012 -1.8711143440335354 -0.32327223490104395 GEGTEQEPSTTPEADDDGRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEGTEQEPSTTPEADDDGRR 20 1 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 ; 310.23 4.801299999999998e-66 893910000.0 321000.0 345340.0 315690.0 324880.0 336030.0 323590.0 312960.0 294130.0 332660.0 324270.0 False True 319271.77166645264 356834.43313756137 360136.40797332994 366009.7746893033 378821.42869414756 301220.9849489257 297820.9291767 316079.474161877 250680.40041562362 303574.8109784856 1.0517070590849498 1.1754415064524253 1.1863184788373395 1.2056658242150482 1.247868449536792 0.9922463065299355 0.9810462476012433 1.0411913727067348 0.8257615301072834 1.0 18.211692563002988 2.6808173645382 7.615269316182301 0.9768186990763809 1.1758812412614734 0.6804805219328813 0.07022903389283232 0.17931996456090327 21.286135127975946 0.02276160320178718 0.021491538861745502 479.5317469726026 -2.6808173645382 0.19906254218509256 GEGYAKPNEGAIVEVALEGYYK ddPTM_BT-474_Trastuzumab_2h_R1 5 GEGYAKPNEGAIVEVALEGYYK 22 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;; 233.28 1.8866999999999996e-30 2239271000.0 4053663.0 3830833.0 3450108.0 3104987.0 3343883.0 4418507.0 4227227.0 4257513.0 6025860.0 4610859.0 False True 4031838.528812303 3958339.9606175506 3935853.217523674 3498078.0358385085 3769706.6793026584 4113066.0111366957 4022739.8804346705 4575230.239272959 4540867.5453871535 4316590.031065005 0.9340332298866829 0.91700623226453 0.9117968556658613 0.810379955164621 0.8733066267987888 0.9528507413343363 0.9319253974744888 1.0599177142945264 1.0519571033403916 1.0 22.041460648402076 1.9996840376809353 1.8220733584939195 1.0440620757820351 0.8921707267103935 0.6976697656991917 0.04009264241992501 0.19212136551557119 1.1901080683285827 0.025478039627249958 0.012852811013934718 99.9272734460047 -1.9996840376809353 -0.1518913490716416 GEHSIVYLKPSYAFGSVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEHSIVYLKPSYAFGSVGK 19 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 189.55 8.269e-15 4074500000.0 2379400.0 2390000.0 2183700.0 2022700.0 1972700.0 2403100.0 2458500.0 2306600.0 3067700.0 2575000.0 False True 2366589.574776194 2469549.7052144916 2491145.97893934 2278773.6126078977 2223911.6518910383 2236979.353288927 2339572.9626179617 2478730.2046774724 2311706.4400739744 2410661.2954315846 0.9817179954982019 1.0244283217615455 1.0333869729689031 0.9452898326805074 0.9225317783570619 0.9279525736478201 0.9705108581830465 1.0282366126568192 0.9589511576988695 1.0 21.200997531866552 3.7403505290567542 24.99481124132338 0.9668177157510421 1.0143028195104913 0.31936470769337577 0.032268502882741655 225.9386499399812 3155062.830082359 0.009750227503745459 0.016443600801255644 5499.8459997245645 -3.7403505290567542 0.04748510375944914 GEIEFEVVYVAPEVDS(ph)DDENVEYEDESGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GEIEFEVVYVAPEVDSDDENVEYEDESGHR 30 0 Q9HD26-2;Q9HD26;F5H1Y4;A0A0J9YVX5 Q9HD26-2 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein 1 GEIEFEVVYVAPEVDS(0.996)DDENVEY(0.003)EDESGHR;GEIEFEVVYVAPEVDS(1)DDENVEYEDESGHR 146.59 2.3073e-08 152001000.0 100944.0 120124.0 118725.0 119498.0 124663.0 128205.0 118809.0 109530.0 140550.0 122202.0 True False 100400.52871993286 124122.25472350868 135440.4480238007 134626.43454759417 140538.09411450932 119342.49011210792 113061.75477554511 117703.68478207041 105913.3357735101 114402.9637376043 0.8776042633844037 1.0849566363350223 1.1838893294272357 1.1767740113479457 1.2284480185045625 1.0431765595324345 0.9882764491562002 1.028851709227015 0.9257918878433422 1.0 16.803764901676885 2.4895777971950817 15.905921235139711 0.9954021378617279 1.1186137674258074 0.28526960868474216 0.09217474504022119 6.876476364810235 8782.209242846408 0.0320874697334707 0.028790540096567133 308.729263727446 -2.4895777971950817 0.1232116295640795 GEIKDSS(ph)PSSSPSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEIKDSSPSSSPSPK 15 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 GEIKDS(0.283)S(0.705)PS(0.009)S(0.001)SPSPK 122.44 6.5937e-05 142740000.0 131860.0 115450.0 142300.0 117470.0 124130.0 180710.0 163460.0 163690.0 228870.0 185540.0 True False 131150.0804110233 119292.68345900119 162334.60310622724 132341.68995552947 139937.21972384758 168217.9430455837 155552.81532216087 175905.37900097805 172468.05520087716 173698.67835121407 0.7550436287479478 0.6867794538873495 0.9345759256612823 0.7619038395210936 0.8056320350400035 0.968446879632852 0.8955325210226255 1.012704187911563 0.9929151841452206 1.0 17.406227251263452 2.724446530543558 0.6076439772609777 1.019089006206322 0.7463056389953634 0.6688487198899172 0.06515899860165167 0.4828078801236577 0.37929806887689077 0.05144006551684006 0.056080942883190675 530.2083104379653 -2.724446530543558 -0.27278336721095864 GEIPS(ph)PQLTRPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GEIPSPQLTRPK 12 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 GEIPS(0.998)PQLT(0.002)RPK;GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK 106.3 0.001173 1307440000.0 1731460.0 1504790.0 1538680.0 1450360.0 1436680.0 1668810.0 1585580.0 1770470.0 2400640.0 1748910.0 True False 1722138.0117432924 1554876.0254852364 1755312.7695536867 1633975.4272912391 1619632.6821304897 1553449.0926561903 1508879.4378961911 1902591.4616644972 1809034.4389279222 1637293.066482817 1.0518202556386174 0.9496626213811395 1.0720822102571996 0.997973704732834 0.9892136693705881 0.948791101884565 0.9215695520762938 1.1620347637283934 1.1048934830060904 1.0 20.642881148753354 1.7362561310616145 24.99999999745345 1.100475181022055 0.9904254053879045 0.38197164323803945 0.057040449553794254 0.2654612807475323 2820.4355050378467 0.025717253233014114 0.014261582666416592 54.48238753811106 -1.7362561310616145 -0.11004977563415053 GEKPNPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GEKPNPLR 8 1 P68402;J3KNE3 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 0 ;;; 95.815 0.008556999999999999 2936860000.0 4091960.0 4658560.0 4366230.0 4166690.0 4352810.0 5136840.0 5238920.0 4666460.0 6017240.0 5394720.0 False True 4069929.3420194983 4813617.353441018 4980957.232048508 4694192.526779644 4907114.552373819 4781742.341620688 4985493.4249821035 5014694.94100375 4534371.828885065 5050424.350947841 0.8058588861460072 0.953111465284619 0.9862452906781396 0.929464971769879 0.9716242064793771 0.9468001120981591 0.9871434712305805 0.992925463790506 0.8978199679466686 1.0 22.267973181601985 4.735770392152579 4.542147170933847 0.9651796005840049 0.7958649173726906 0.7096338150087076 0.030176172433877126 0.09495030088549472 5.095860418084714 0.006896414695095296 0.05128920724781039 54421.48549449047 -4.735770392152579 -0.16931468321131427 GELS(ph)EEELPYYVELPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GELSEEELPYYVELPDR 17 0 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 1 GELS(1)EEELPYYVELPDR;GELS(1)EEELPYYVELPDR;GELS(1)EEELPYYVELPDR;GELS(1)EEELPYYVELPDR 305.19 8.772299999999998e-47 504487000.0 529477.0 553038.0 499426.0 546770.0 506131.0 535748.0 533840.0 491078.0 532194.0 560264.0 True False 526626.3546624252 571445.5355114691 569740.8397113881 615991.0259384084 570583.7827765305 498713.00177513884 508016.11973316007 527724.7340035562 401041.9197342406 524507.4718538574 1.0040397571479367 1.0894897902821297 1.086239701595965 1.1744180187961955 1.08784681514606 0.9508215393242184 0.9685584038251942 1.0061338728661529 0.7646066858051972 1.0 19.00060379925027 2.7393092489691075 5.892700991191622 0.9461003022594298 1.0936034403590742 0.5069867447726862 0.07387895299157199 0.1381937192414682 20.870541956337355 0.023343768349727022 0.0233699981894588 548.6675166661564 -2.7393092489691075 0.14750313809964444 GELTTLIHQLQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GELTTLIHQLQEK 13 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 0 ; 177.42 1.5462000000000002e-05 592940000.0 709100.0 714240.0 686640.0 661430.0 551310.0 709380.0 742430.0 662340.0 828590.0 781030.0 False True 705282.284388416 738013.0466328028 783312.9436181296 745166.9701820539 621516.0606296173 660342.2303009016 706515.8245419783 711767.1740943721 624395.0970371604 731183.9967265762 0.964575657489607 1.0093397146775633 1.0712938837897552 1.0191237411076797 0.8500132161153291 0.9031136256498709 0.966262702281458 0.9734446832546514 0.8539507153226862 1.0 19.479874969209348 3.2987485508467373 19.018432990021637 0.9284766106599801 1.0195504143055165 0.42806344980549527 0.05169473517481472 8.20203751226527 2590.710711329007 0.014648146409233299 0.01983351361299701 1989.5211064158984 -3.2987485508467373 0.09107380364553641 GELWDTCNIGVPWYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GELWDTCNIGVPWYDR 16 0 P13807 P13807 GYS1 Glycogen [starch] synthase, muscle 0 ; 154.07 9.0953e-07 159400000.0 192608.0 183690.0 178458.0 177189.0 179738.0 196731.0 196716.0 169807.0 181654.0 192144.0 False True 191571.01992876074 189804.01060704998 203583.3352152569 199621.10923240255 202626.56890940876 183131.44902496092 187200.09555190345 182478.8606024746 136887.80573889153 179881.2054172452 1.0649863029570006 1.055163101485718 1.1317654601159315 1.1097385564510172 1.126446581450265 1.018068833818278 1.0406873531766794 1.0144409482869763 0.7609900401844212 1.0 17.456684931355216 1.4701968883547147 3.875092600563312 0.8788801524030946 1.0781849755789368 0.5851816193216081 0.06491607344080333 0.1291922672880235 3.832960565269758 0.04286669438194306 0.01605282139330191 29.52547467158276 -1.4701968883547147 0.1993048231758422 GEMMDLQHGSLFLR ddPTM_BT-474_Trastuzumab_2h_R1 9 GEMMDLQHGSLFLR 14 0 P00338;P00338-3;P00338-4;P00338-2;P00338-5;F5GXY2;F5GYU2;F5GXH2;F5H5J4;F5H6W8 P00338 LDHA L-lactate dehydrogenase A chain 0 ;;;;;;;; 216.15 6.2369e-12 13538029000.0 5993239.0 11593059.0 13175698.0 13294256.0 12143552.0 16699859.0 16600472.0 11865557.0 11425312.0 14756468.0 False True 5960972.067135446 11978926.960662855 15030721.75317997 14977307.446509205 13689961.366728188 15545437.054569613 15797443.749398643 12751025.115417607 8609696.94893715 13814697.578592123 0.4314949374188861 0.8671146720740336 1.0880239446191171 1.0841574606539859 0.9909707605863749 1.125282472969913 1.1435243992513504 0.9230042889376868 0.6232273200304524 1.0 23.719700644267046 4.698127272800116 2.9496344485647503 1.004795445287614 0.36142924529809467 0.5880293987376635 0.1417379961769612 0.24017706804088845 3.1754888424634347 0.0357585424807135 0.3478227511801775 49903.0710202723 -4.698127272800116 -0.6433661999895193 GENHPHFEGGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GENHPHFEGGVK 12 0 F6WE04;Q5SRH9-5;Q5SRH9-6;Q5SRH9-4;Q5SRH9;A0A0A0MRQ0;A0A0A0MSH8;E9PAZ4;A0A0A0MSW9;Q5SRH9-3 F6WE04 TTC39A Tetratricopeptide repeat protein 39A 0 ; 93.011 0.004286600000000001 206158000.0 397040.0 405150.0 358280.0 370130.0 337680.0 463310.0 460220.0 69201.0 562180.0 319520.0 False True 394902.3807552912 418635.1728316527 408722.7097744142 416988.42004971596 380681.54641383095 431282.47021442815 437957.40038887033 74365.1300155579 423638.27182605467 299127.9600451654 1.3201787646185426 1.3995186968427922 1.366380828166986 1.3940135184512836 1.2726377913865081 1.4417992559081028 1.464113887323482 0.2486064158105765 1.4162443115049808 1.0 18.190403242577858 1.780695915535216 24.999999999987708 0.8099785494730966 1.3788570409891054 0.39606198797100134 0.273051961014818 53.36358157326977 31673.42985589787 0.11674107529093725 0.06493704643132923 60.352590441941075 -1.780695915535216 0.5688784915160089 GENLEHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GENLEHLR 8 0 C9JXZ5;Q9BV40;B8ZZT4 C9JXZ5 VAMP8 Vesicle-associated membrane protein 8 0 ; 167.04 0.00031497 517090000.0 761570.0 996570.0 1098810.0 907700.0 811580.0 906910.0 893330.0 635920.0 1092850.0 790380.0 False True 757469.791738381 1029740.2300107146 1253512.8969722667 1022614.7269314217 914929.902388467 844217.4463365058 850116.2150479986 683375.5795363293 823531.760939741 739937.2717216385 1.023694603160007 1.3916588194223292 1.6940799509337778 1.382028944902407 1.2364965752565307 1.140931101324623 1.14890308616297 0.9235588010674133 1.1129751026375523 1.0 19.49704344570274 2.704202102645649 1.4529492964896378 1.0246081334483836 1.3923803834758375 0.4512430329220125 0.16165270656084355 0.35921275530931573 1.533828646868758 0.07271042690471206 0.06751059692586313 506.06010660770727 -2.704202102645649 0.36777225002745384 GEPAAAAAPEAGAS(ph)PVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 GEPAAAAAPEAGASPVEK 18 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK 334.82 5.133299999999997e-75 8707950000.0 6577900.0 6074940.0 5385320.0 5073970.0 4884530.0 5710420.0 4867930.0 4306050.0 5744800.0 4473160.0 True False 6542485.317273393 6277140.705521227 6143526.245959432 5716334.081754138 5506545.94262246 5315672.106282775 4632449.628601526 4627389.316678852 4329071.0163761005 4187679.099135055 1.5623177331387956 1.4989545657444812 1.467047999744858 1.3650363235651983 1.314939806099233 1.2693599438841199 1.1062093152167118 1.1050009342011466 1.0337637898926517 1.0 21.99771946244668 2.8961256680729037 0.4818949105387957 0.9849490862623518 1.6000434557381824 0.9840416854191084 0.02431437111716999 0.12484059356645115 0.059063305416821046 0.02125964771516143 0.03341523435946493 787.273563344195 -2.8961256680729037 0.6150943694758306 GEPETFLPLDYLEVKPTDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEPETFLPLDYLEVKPTDEK 20 1 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 151.95 6.3888e-08 130330000.0 86731.0 77017.0 71126.0 58223.0 58469.0 85621.0 83956.0 93345.0 137650.0 88200.0 False True 86264.04993271992 79580.46428724042 81139.92256172528 65594.02583026123 65914.68057708576 79702.22180015441 79894.72753693453 100310.87789630581 103728.00191550124 82571.00048818103 1.0447257441802162 0.9637822457853267 0.9826685165736778 0.7943954347464903 0.7982788168652576 0.9652568253858417 0.9675882218282001 1.2148439198173941 1.2562279892726813 1.0 16.33334756557877 1.8401317197521794 4.087583903344938 1.1766593872150843 0.9208498363048138 0.5332655311445713 0.09676837061506553 0.165332774084905 4.438688485949962 0.04929196562380304 0.027113572997923135 69.20408322655132 -1.8401317197521794 -0.2558095509102706 GEPNVS(ph)YICSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GEPNVSYICSR 11 0 A0A3B3ITW1;P49841;P49841-2;P49840;A8MT37 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 GEPNVS(0.763)Y(0.237)ICSR;GEPNVS(0.816)Y(0.184)ICSR;GEPNVS(0.621)Y(0.379)ICSR;GEPNVS(0.856)Y(0.144)ICSR;GEPNVS(0.713)Y(0.287)ICSR;GEPNVS(0.918)Y(0.082)ICSR 207.12 2.5237e-08 8424521000.0 754948.0 844265.0 804821.0 756693.0 725684.0 820762.0 845657.0 702289.0 1029742.0 810470.0 True False 750883.4438506084 872365.8501560296 918132.8011704627 852490.2562145195 818095.5559339453 764024.6548059285 804749.3401865446 754697.3713312825 775975.8819358655 758745.1107217235 0.9896385930399775 1.149748232744761 1.2100675025070389 1.123552882474096 1.0782218486465993 1.0069582577990954 1.060631994611552 0.994665218486099 1.022709564741382 1.0 19.53325578925126 2.976602954213584 2.81999111832622 1.018379197616835 1.1267927986915407 0.43617349153570584 0.05406299225516963 0.24779231025364137 3.9678276576758145 0.017504901222763714 0.02000303221935676 947.5517853009306 -2.976602954213584 0.10841360107470566 GEPNVSY(ph)ICSR ddPTM_BT-474_Trastuzumab_2h_R1 5 GEPNVSYICSR 11 0 A0A3B3ITW1;P49841;P49841-2;P49840;A8MT37 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 GEPNVS(0.266)Y(0.734)ICSR;GEPNVS(0.135)Y(0.865)ICSR;GEPNVS(0.306)Y(0.694)ICSR;GEPNVS(0.289)Y(0.71)ICSR;GEPNVS(0.443)Y(0.557)ICSR 217.78 1.1433e-10 33980670000.0 1197607.0 1389330.0 1357410.0 1396630.0 1228830.0 1249760.0 1294927.0 1205100.0 1476220.0 1414750.0 True False 1191159.2169786463 1435573.0091822806 1548521.5291807714 1573443.2148003015 1385314.2166539584 1163367.0328185966 1232286.433908478 1295030.681373806 1112425.3613345525 1324459.4437715886 0.8993549954135623 1.0838935204344802 1.1691724774683427 1.1879889733125355 1.0459468752845138 0.8783712013904644 0.9304070726389063 0.9777805484824964 0.8399089655525891 1.0 20.33697223699138 2.903357896769065 5.160109556628156 0.9297888513046294 1.0939319240259853 0.45234862839335943 0.08404558677592902 0.20832505106919552 8.679348021495088 0.026572985076444906 0.028472710394614093 800.4936602974294 -2.903357896769065 0.16414307272135586 GEPPHSELHPMK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEPPHSELHPMK 12 0 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;Q5JV98 B4DR80 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit 0 98.105 0.002629 139690000.0 141860.0 150180.0 137250.0 128450.0 130800.0 162100.0 141030.0 57786.0 172190.0 115530.0 False True 141096.24152212756 155178.65051427283 156573.60700161406 144711.75682972485 147456.60468766026 150894.40854235578 134207.84011308174 62098.28475136236 129756.08172778902 108156.77648979065 1.3045529471326858 1.4347566148933883 1.447654156153532 1.3379814148157863 1.3633598325813574 1.3951452090160927 1.2408639057928115 0.5741506613524494 1.199703670347805 1.0 16.722764533652025 1.9482620892331364 7.89201275523449 0.8829207146459406 1.3782577876003492 0.6459831387360557 0.15001008669451327 0.16125628310297913 22.388151712469906 0.059850249510276586 0.037768378759291364 88.76915569775848 -1.9482620892331364 0.49533707295440865 GEPS(ph)PTWESNITEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEPSPTWESNITEK 14 0 E7EWN3;Q9C0A6;Q9C0A6-2;Q9C0A6-3;H0Y3R4 E7EWN3 SETD5 SET domain-containing protein 5 1 GEPS(0.933)PT(0.067)WESNITEK 133.71 4.5069e-05 84853000.0 79495.0 88928.0 78544.0 82632.0 76607.0 91778.0 82837.0 73761.0 98395.0 86004.0 True False 79067.00775272472 91887.91472188885 89602.31248331358 93093.2027275502 86362.44736473697 85433.60288217342 78829.85784192974 79265.42037076871 74146.87067545031 80515.15108827107 0.9820140269753862 1.1412499818965687 1.1128627503298105 1.156219686223894 1.0726235521815681 1.0610872826719298 0.9790686197124104 0.9844783161850836 0.9209058130458075 1.0 16.296972670145166 2.347926428549601 1.8041551542980212 0.9655074066498279 1.101337717843822 0.588753590844113 0.04820593613314246 0.23184194746554507 1.535941369076583 0.02221469391995479 0.0156672276061827 222.8057674246331 -2.347926428549601 0.13583031119399402 GEPWFHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEPWFHGK 8 0 P29353-2;P29353-7;P29353;P29353-6;H0Y539;X6R6D0;P29353-5;P29353-3 P29353-2 SHC1 SHC-transforming protein 1 0 73.931 0.039808 0.0 318140.0 305200.0 306570.0 281380.0 317820.0 314090.0 306330.0 312340.0 362420.0 344820.0 False True 316427.1695886766 315358.39750270377 349732.39124579116 317002.67914945877 358292.49313327373 292377.69758833095 291511.6476057599 335648.39683038305 273106.4471791931 322813.2923847454 0.9802172867514468 0.9769064810591613 1.0833890657419467 0.9820000806275312 1.1099062572251281 0.9057176531623743 0.9030348330833956 1.0397601485081975 0.8460198313447727 1.0 18.30034045969045 2.715870532353653 24.989280987527536 0.9465305586426499 1.0244196338822693 0.30988541202024944 0.06481268823239339 1101.657831450147 1213287.992051724 0.020521867551744243 0.01936138460756888 519.8410034889457 -2.715870532353653 0.07788907523961941 GEQVSQNGLPAEQGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 GEQVSQNGLPAEQGSPR 17 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 1 GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR 418.58 2.886699999999998e-141 2070310000.0 1314460.0 1289740.0 1169640.0 1231420.0 1282170.0 1431170.0 1307210.0 1241450.0 1427100.0 1390000.0 True False 1307383.0934102356 1332668.2162357073 1334315.145306868 1387317.645739664 1445446.749483009 1332236.586511803 1243975.258272859 1334093.302955368 1075410.3271602744 1301289.009961127 1.0046831129767941 1.024113940895818 1.0253795544978341 1.0661103222420258 1.1107807246648371 1.0237822469211513 0.955956170190064 1.0252090755728591 0.8264192803660116 1.0 20.31150998251948 1.8292794169730207 1.4115120799716891 0.9335479594190987 1.043859173947006 0.37785126578557493 0.056202907276507355 0.4332644778773605 1.623666641599904 0.042141701846113024 0.01748735565281038 67.49621460924524 -1.8292794169730207 0.11031121452790726 GES(ph)ENAGTNQETR ddPTM_BT-474_Trastuzumab_2h_R1 8 GESENAGTNQETR 13 0 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(0.999)ENAGT(0.001)NQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR 329.77 2.2609999999999994e-62 1807537000.0 983201.0 933536.0 844060.9 878009.0 865754.0 977232.1 934231.0 897023.0 1025339.0 949919.0 True False 977907.5550598996 964608.1814255709 962897.3380111388 989164.8493757086 976002.6401740108 909678.3450839246 889038.6774210045 963963.4112504998 772657.9422886886 889294.3561534289 1.099644395911563 1.0846894222942174 1.0827656010053563 1.1123030777506129 1.0975023437634661 1.0229215318746259 0.9997124925727289 1.0839643865727944 0.868843861363023 1.0 19.7623015041475 2.03179824630983 0.7941678240811638 0.9671981079132217 1.0966658633171178 0.5148517883352793 0.049441449294618904 0.5584193726400104 0.6593883696903928 0.04172261371256328 0.02194349831103312 107.59652524287985 -2.03179824630983 0.1294677554038961 GES(ph)LS(ph)FWPHCLFVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GESLSFWPHCLFVK 14 0 S4R3P3 S4R3P3 SNRPB 2 GES(1)LS(1)FWPHCLFVK 51.218 0.087822 12022000.0 21273.0 17893.0 15697.0 15842.0 15788.0 22581.0 21590.0 19963.0 26851.0 22585.0 True False 21158.468531652496 18488.557688453093 17907.001159230138 17847.595575683143 17798.508217192524 21020.028619956393 20545.609218190697 21452.740430060006 20233.930834966373 21143.605964008708 1.00070293438447 0.8744278397887703 0.8469227618842303 0.8441131378471518 0.8417915206843 0.994155332620998 0.9717173718221982 1.0146207069209252 0.9569763487557037 1.0 14.367933823571402 2.728746554596748 24.70197956121816 0.9892520685585185 0.8771854623355702 0.5747860350107001 0.04545198449372855 414.3417278192922 1042895.5923687848 0.014929117394000876 0.01423545439801236 535.4840687293868 -2.728746554596748 -0.1120666062229484 GESAADS(ph)DGWDSAPSDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GESAADSDGWDSAPSDLR 18 0 I3L4Q4;Q9BUL5-4;Q9BUL5;I3L0Y2;A0A087WVQ2;Q9BUL5-2 I3L4Q4 PHF23 PHD finger protein 23 1 GESAADS(0.996)DGWDS(0.004)APSDLR;GESAADS(1)DGWDSAPSDLR 406.71 3.345999999999998e-147 798880000.0 653220.0 768250.0 698510.0 718160.0 739850.0 794510.0 732840.0 642980.0 726310.0 787520.0 True False 649703.1360995646 793820.7368330677 796854.1364422409 809078.9823653955 834065.5120654847 739587.3937753674 697389.7294793361 690962.4325862832 547320.6325553764 737259.7993702062 0.8812404211575952 1.0767177832172294 1.0808322074836338 1.0974136702645931 1.1313047487167662 1.0031570884607428 0.9459212750716524 0.9372034568771118 0.742371458504746 1.0 19.491813567592043 2.08006187431801 1.7297214693086025 0.882577067787873 1.0579991810289737 0.3924244508108016 0.08729583946932366 0.35316816453617883 2.0087008143532046 0.05068898857951759 0.027073561194242687 120.24357344944904 -2.08006187431801 0.17542211324110069 GESAEDKEHEEGRDS(ph)EEGPR ddPTM_BT-474_Trastuzumab_2h_R1 10 GESAEDKEHEEGRDSEEGPR 20 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7EPS6;A0A087WX58 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR 268.24 2.6954e-37 7465263000.0 4156093.0 3444532.0 3110434.0 2849320.0 3080827.0 3838499.0 3638948.0 3502088.0 4648872.0 3723797.0 True False 4133717.0570733394 3559181.165356432 3548356.070823008 3210043.6198526407 3473152.0569577226 3573152.5989847244 3462918.183108684 3763431.589802535 3503219.7872932805 3486141.087356992 1.185757246620017 1.0209515553642767 1.0178463756649574 0.9208014074629223 0.9962740950312149 1.0249592628202262 0.9933385070579819 1.079540814756803 1.004899027178856 1.0 21.73319952717313 4.743516770339004 4.066986639433503 1.0085840587962307 1.2018939876388253 0.6814648406794533 0.03683521001921555 0.15181762514591 5.375358495004721 0.009744189431297423 0.08681995922600709 55400.89366540976 -4.743516770339004 0.19330992884259457 GESDPAYQQYQDAANNLREDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 GESDPAYQQYQDAANNLREDYK 22 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 139.83 1.2236e-07 348810000.0 119280.0 127110.0 120770.0 155680.0 123110.0 151500.0 153030.0 127640.0 221740.0 150290.0 False True 118637.80973325399 131340.7795103823 137773.36624834177 175389.07203776977 138787.3287698613 141027.16159263966 145627.35426862986 137165.14494278716 167095.14816377207 140698.3635302576 0.8432067492223574 0.933491877338979 0.9792108649416751 1.2465608528563434 0.9864175054176425 1.0023369004026217 1.0350323245750634 0.9748879908847652 1.187612591725971 1.0 17.102246023050263 4.289722287867662 2.554170237607885 1.051285782973149 0.8625021303438655 0.390157066377971 0.08693034227723732 0.3008146138891123 3.7921947609686986 0.022137888091182632 0.08098252455944735 19485.981588527247 -4.289722287867662 -0.18878365262928354 GESEDDFWWCIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GESEDDFWWCIDR 13 0 O43865-2;O43865;H0Y8B3;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 O43865-2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Adenosylhomocysteinase;Putative adenosylhomocysteinase 3 0 ;;; 284.47 2.615e-32 754040000.0 408107.0 525413.0 436763.0 507170.0 446614.0 476313.0 461980.0 424652.0 489534.0 480633.0 False True 405909.79725695046 542901.0540861351 498255.43398794846 571377.6699986877 503487.6456114273 443386.6034301979 439632.2624650182 456341.68857916363 368894.90511952696 449958.59044938645 0.9021047844681814 1.2065578157846133 1.10733619618269 1.269845008244062 1.1189644031655888 0.98539424036193 0.9770504926374335 1.0141859679207417 0.819841898675834 1.0 18.779432711207523 2.721895920051283 4.152500238004093 0.964019008304258 1.1344434707998041 0.3863944769272214 0.10154174287339199 0.22054339116276558 9.172143715855697 0.032287857550521444 0.03179563780613783 527.10352437645 -2.721895920051283 0.1704244624955461 GESEFDSFRQSLPVFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GESEFDSFRQSLPVFEK 17 1 Q9H6S0;D6RA70 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 0 68.944 0.021513 135500000.0 149760.0 182140.0 173310.0 187840.0 170390.0 232370.0 212390.0 203780.0 280120.0 275350.0 False True 148953.70879990034 188202.4197940451 197710.54156247544 211620.52474033105 192088.156519346 216306.8088401429 202115.88429140917 218987.09837387275 211088.17941569298 257776.927261005 0.5778395699824652 0.7300980029274918 0.7669830797629495 0.8209443994421597 0.7451720313387565 0.8391240098115039 0.7840728277700441 0.8495217190332296 0.8188792599035111 1.0 17.975763613172127 6.903155029702987 0.08477381416203847 1.140919800495512 7.108252137098415e-17 0.7726496528554962 0.04837142505786143 67.43723940000288 0.5175683226555963 1.2047079842568236 9.11371769902082 8001198.220739195 -6.903155029702987 -1.140919800495512 GESFYQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GESFYQDR 8 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ; 156.01 0.00093025 1787080000.0 1106900.0 1404590.0 1241390.0 1339290.0 1285580.0 1271380.0 1287030.0 1101430.0 1440640.0 1211510.0 False True 1100940.5733881525 1451340.9290574137 1416166.9216446895 1508843.976679503 1449290.9927703533 1183492.4931066008 1224771.4419679465 1183624.299548213 1085613.575586979 1134190.394574106 0.9706840920668889 1.279627244244472 1.2486148079013375 1.3303268868240428 1.2778198437437562 1.0434689790782508 1.0798640579458039 1.0435851909966753 0.9571704898758486 1.0 20.11323141264792 2.727534470775175 22.6691271638485 1.0333902347943626 1.2322104159874392 0.5100363596439919 0.095869825764249 171.2946687783424 352170.5033308474 0.030921330851375523 0.029464467624135782 533.9916558207768 -2.727534470775175 0.19882018119307654 GESGQSWPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GESGQSWPR 9 0 A0A087WYT3;Q15185-4;Q15185;Q15185-3;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 115.82 0.0032877 108930000.0 137950.0 151510.0 119860.0 161190.0 160500.0 136590.0 139900.0 134400.0 148910.0 134990.0 False True 137207.2925276858 156552.91876027084 136735.24615820375 181596.63747281692 180938.72364196848 127147.85479827478 133132.502530101 144429.61046937137 112213.1257917709 126374.82262924641 1.0857169938842903 1.238798326305547 1.0819817057971457 1.4369684854520282 1.4317624339841768 1.0061169792601512 1.0534733086880763 1.1428669687877102 0.8879389379716675 1.0 16.947349541701907 2.7104765587954818 24.983103402426302 1.0393647526727399 1.2546351520147074 0.4637488682866886 0.12637620086886345 752.6501022568312 669544.127135279 0.04282947315103559 0.0403873654867225 513.4244644806087 -2.7104765587954818 0.21527039934196757 GESQNTDLS(ph)PKPLISEQTVILGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GESQNTDLSPKPLISEQTVILGK 23 1 P15622-2;P15622-3;P15622;E9PPG5;E9PL28 P15622-2 ZNF250 Zinc finger protein 250 1 GESQNT(0.015)DLS(0.985)PKPLISEQTVILGK;GESQNT(0.005)DLS(0.995)PKPLISEQTVILGK 236.79 2.3788e-37 482270000.0 793070.0 627930.0 619330.0 534640.0 524480.0 830560.0 773040.0 769500.0 1229430.0 812620.0 True False 788800.1992383604 648830.2704582987 706526.2806871367 602325.3691821254 591269.4191634866 773145.3421279398 735645.1019004222 826923.9974418264 926453.4500179774 760757.8958810164 1.0368610086193963 0.8528735277954667 0.9287137005248229 0.7917438286783552 0.77721101859712 1.0162830334249475 0.9669897688652819 1.086973926815685 1.217803265709221 1.0 19.537077876938458 2.074281577251753 1.5505328798615041 1.1123324585813512 0.8803895121134125 0.5012841805956718 0.0912381495232842 0.30881102104116576 1.402848357174142 0.05693537274264458 0.029324648767072234 118.65377972361735 -2.074281577251753 -0.23194294646793867 GETITGLLQEFDVQEQDIETLHGSVHVTLCGTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GETITGLLQEFDVQEQDIETLHGSVHVTLCGTPK 34 0 Q92597;E5RI76;E5RIR1;E5RGM5;E5RIM2;E5RH82;E5RK17;E5RIV1 Q92597 NDRG1 Protein NDRG1 0 ;;; 259.15 7.707599999999998e-60 244785000.0 142423.1 195705.5 233878.7 242209.5 206069.3 361166.0 355675.0 186012.0 285048.5 318398.8 False True 141656.30985429397 202219.43926102712 266806.78804989735 272873.1978657002 232311.00388656626 336199.4445133151 338469.6414395538 199893.159989797 214802.11662920975 298078.3159890731 0.4752318510128955 0.6784104324731896 0.8950895578049292 0.9154412891802003 0.7793623065660445 1.1278896400019902 1.135505748938683 0.6706061771937971 0.7206230883197956 1.0 18.185331903261783 4.5018007868040755 2.1380245471608395 0.9000242556222232 0.4499013836997303 0.46835193389146534 0.14769743469152471 0.40820649428369676 2.959581651099579 0.041027421467305925 0.2911434106494354 31754.171557369707 -4.5018007868040755 -0.4501228719224929 GEVEEYFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GEVEEYFR 8 0 I3L1Y8;Q9HBL8;I3L543;I3L0Y6;I3L3I6 I3L1Y8 NMRAL1 NmrA-like family domain-containing protein 1 0 98.299 0.017728999999999998 248880000.0 168580.0 204470.0 164530.0 226040.0 184380.0 209850.0 208020.0 157590.0 184570.0 180420.0 False True 167672.3840109987 211275.6603452751 187694.39387960322 254656.64082359662 207859.7000941192 195343.56343376506 197957.2778864303 169350.1660258056 139085.19661128966 168905.44113466697 0.992699719349567 1.2508517128043655 1.1112394758790274 1.50768760978257 1.2306276144674009 1.1565261729965182 1.1720005972371283 1.0026329814371349 0.8234500657702207 1.0 17.365856278429046 1.683196651205596 2.2941992980019768 0.907869220193244 1.2184572381729193 0.4682530034405833 0.12960089097449604 0.22660289080586452 2.58948840979599 0.08849962116320947 0.0361512837580185 48.21660759595676 -1.683196651205596 0.3105880179796753 GEVISSGSKPLS(ph)PGPCLDIPSILSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEVISSGSKPLSPGPCLDIPSILSNK 26 1 Q8TEP8;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1;K7EPA2;Q8TEP8-2;C9JT09 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 GEVISSGS(0.002)KPLS(0.997)PGPCLDIPSILSNK 141.59 1.7872e-07 168240000.0 181450.0 145770.0 119610.0 112450.0 118580.0 164960.0 151740.0 153420.0 175580.0 148750.0 True False 180473.0933609901 150621.86633017412 136450.04833124272 126686.1584702416 133680.460121275 153556.7034740713 144399.7564969085 164868.97945097453 132310.6616514616 139256.64764871774 1.295974708627505 1.08161347320471 0.9798458503427799 0.9097314965517059 0.9599574769205348 1.102688496863907 1.0369325912624618 1.183921789262551 0.9501209736516294 1.0 17.087386673103914 4.7093197214098526 3.3149501405070425 1.0285908132436594 1.3237465279425398 0.544417546686125 0.07623413331577789 0.2535706537941109 4.657397777447193 0.02080072660354889 0.1830883512159312 51205.8667109308 -4.7093197214098526 0.29515571469888036 GEVPGGSAHYGGPS(ph)PEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEVPGGSAHYGGPSPEKK 18 1 O94762-4;O94762;J3KS37 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 GEVPGGSAHYGGPS(1)PEKK;GEVPGGSAHYGGPS(1)PEKK 141.79 5.5177e-08 598110000.0 613170.0 490570.0 487000.0 467600.0 479960.0 746050.0 756140.0 602590.0 1049670.0 740560.0 True False 609868.760849592 506898.3258941729 555565.3669201173 526798.1120558925 541080.0610542006 694477.3195127964 719562.6194646929 647558.3256900199 790992.8933573856 693296.8267746858 0.8796647226654523 0.7311418519717379 0.8013383957123897 0.759844977953572 0.7804450275236093 1.0017027234115616 1.0378853496448257 0.9340275343571847 1.1409152080461635 1.0 19.40311363175148 2.7273766252433713 6.676857984414042 1.0136839674104385 0.7857695469162512 0.7882326191384943 0.060124295342836497 0.06734775916347321 16.165775447564727 0.018363213600313358 0.018019437511751567 533.7976103404179 -2.7273766252433713 -0.2279144204941873 GEVPPKET(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 GEVPPKETPK 10 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK 97.86 0.0093298 3852460000.0 5996800.0 3855150.0 3557740.0 3111170.0 3344600.0 4816980.0 4620130.0 4431470.0 8048430.0 4373560.0 True False 5964513.895107116 3983466.3372626137 4058638.867569559 3505043.803004556 3770514.985002665 4483993.510551239 4396636.661289458 4762168.793948707 6065002.269936624 4094435.656406897 1.4567365067207625 0.9728975300977949 0.9912572105556662 0.8560505273834084 0.9208875902354535 1.0951432350719126 1.0738077308431218 1.1630830701898938 1.4812791746882676 1.0 21.965233185583568 1.6206613475758722 3.37377886271545 1.2601392365565132 1.0350667309436972 0.134641834312219 0.18764339640365182 0.31310394414547216 8.41304286254563 0.1138884383012511 0.04863137357562841 41.75046795428195 -1.6206613475758722 -0.225072505612816 GEVQFGSWFDHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 GEVQFGSWFDHIK 13 0 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 0 131.53 0.00012932 295600000.0 254830.0 238130.0 250460.0 248450.0 224040.0 300760.0 338900.0 256550.0 319900.0 289960.0 False True 253458.02359427477 246056.0130973755 285722.59096265375 279903.7445258477 252570.16601088268 279969.16911288636 322506.1122762769 275695.06373450335 241064.93144038378 271454.5045527548 0.9337035095876164 0.9064355498641454 1.0525616122429313 1.0311258049926775 0.9304327678297851 1.0313668199176147 1.1880669020675643 1.015621620237009 0.8880491109829232 1.0 18.050350898779236 2.5954849446811474 8.428557782762656 1.0390337293524077 0.9753405426349515 0.08674270668554052 0.08041029937055645 0.6943041837130985 45.69593309425442 0.027324891449605572 0.025732711583660545 393.98976929847726 -2.5954849446811474 -0.06369318671745616 GEVQVSDKER ddPTM_BT-474_Trastuzumab_2h_R1 4 GEVQVSDKER 10 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 ;;; 199.7 2.4968000000000005e-07 3064820000.0 2404320.0 2525850.0 2408850.0 2365740.0 2077100.0 2486430.0 2841360.0 2347280.0 3551670.0 2679640.0 False True 2391375.408265062 2609921.3903414286 2747995.1419004602 2665242.441435216 2341606.373063754 2314548.946526647 2703912.561750735 2522445.952846327 2676408.51843972 2508623.0810447754 0.953262140627805 1.0403800435633659 1.0954196996210337 1.0624324002971435 0.9334229565043053 0.9226371885100804 1.0778472789242721 1.0055101429569062 1.0668834782964152 1.0 21.258464292380268 -1.618799960279011 5.899070704569739 0.9998968793623043 1.018284015338294 0.007691498646069772 0.05919260858553999 8.247193200259041e-05 5.329417089085299e-06 0.05887900820086374 0.013800098867529469 0.02405470524994722 1.618799960279011 0.01838713597598962 GEVRPELGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GEVRPELGSR 10 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 ;;; 158.3 7.324199999999998e-06 1849710000.0 521850.0 662990.0 638780.0 618820.0 631800.0 595590.0 601820.0 557810.0 732190.0 674100.0 False True 519040.4175829852 685057.2213640818 728714.6716247065 697162.5485509568 712255.9850280101 554418.2651680541 572707.6674243411 599436.6147017868 551751.5853433397 631078.3608739541 0.8224658770809187 1.085534323210472 1.1547134505064314 1.1047162947965532 1.1286331923053683 0.8785252348064405 0.9075064254005193 0.9498608284899073 0.8742996425661655 1.0 19.26745962992231 2.7342491286043056 24.99834946817031 0.9203604476716791 1.0685085276923605 0.35561231058006815 0.09188790898550267 398.7722658262678 2312105.3926704577 0.029491968192586177 0.028682094676580696 542.3118928828653 -2.7342491286043056 0.14814808002068136 GEWKPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GEWKPR 6 1 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 ;;;;; 133.99 0.012975 19660660000.0 20330190.0 25352600.0 23341200.0 20554440.0 20169120.0 23232000.0 27590100.0 22533900.0 33398100.0 23708900.0 False True 20220734.51593647 26196445.965029687 26627438.07465261 23156629.996505808 22737537.880259823 21626026.52224559 26255461.458582815 24215494.0428257 25167585.766611665 22195777.70378948 0.9110171666786963 1.1802445633863585 1.1996623155090669 1.0432898682595961 1.024408253844507 0.9743306502188199 1.1829034246500056 1.0909955202286692 1.133890693197689 1.0 24.403781923437453 -0.3248231324473725 6.738344905156129 0.9999999999830799 1.087389082135991 0.06649252751973977 0.09073389784378934 0.0 0.0 0.08572556007554405 0.020205708283477324 0.47334399027970897 0.3248231324473725 0.08738908215291119 GEYNVYSTFQSHEPEFDYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEYNVYSTFQSHEPEFDYLK 20 0 P63151;P63151-2;E5RIY1;Q00005-3;Q00005-5;Q00005-4;Q66LE6;Q00005-2;Q00005;Q00005-6;Q00005-7;H0YB06 P63151 PPP2R2A;PPP2R2B;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform 0 ; 230.01 1.9673e-25 283637000.0 489365.0 503100.0 448842.0 489828.0 458054.0 550889.0 545396.0 510913.0 710699.0 531428.0 False True 486730.3132135631 519845.3793696274 512035.05219539884 551840.1745768032 516384.461801235 512807.3400832181 519013.1118649522 549039.922423646 535556.754328694 497511.810061599 0.978329163991703 1.04489053095094 1.0291917535223971 1.1092001504617097 1.0379340778609845 1.0307440541355697 1.0432176711557681 1.103571636531939 1.076470434465434 1.0 18.924371247560575 5.173749035287968 1.2546759276704245 1.0605952277472213 0.8431406373990306 0.31274691670561605 0.03265665132503342 4.2382954256032495 2.7416233079377994 0.009106138794282542 1.5489990145185195 149193.20212462236 -5.173749035287968 -0.2174545903481907 GEYWECK ddPTM_BT-474_Trastuzumab_2h_R1 2 GEYWECK 7 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 ; 121.52 0.010306 1137230000.0 887360.0 1006470.0 894310.0 817040.0 830240.0 989520.0 965840.0 977450.0 1305680.0 973670.0 False True 882582.5523549636 1039969.7455260378 1020221.0745181299 920477.1802270021 935966.142781982 921116.8114795296 919118.6293328991 1050392.2823905295 983912.6592156292 911529.546999174 0.9682434927759542 1.1409062371589587 1.1192408165777805 1.0098160649397316 1.0268083419382894 1.0105177769737883 1.0083256569781078 1.1523403556675726 1.0794084102427024 1.0 19.797929896053166 -0.6247148299486526 5.8392620221201375 0.9999999996294375 1.0624291686673795 0.06963712020147617 0.06023988371403293 8.91456653388354e-10 9.8712291085755e-19 0.05982464331413419 0.01410080365649691 0.23729313281020167 0.6247148299486526 0.062429169037941934 GFAFVEFSHLQDATR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFAFVEFSHLQDATR 15 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 0 126.48 0.00048339 0.0 117900.0 137840.0 137100.0 142040.0 117390.0 125280.0 146690.0 103290.0 175940.0 114460.0 False True 117265.2394999213 142427.92107396034 156402.48830543752 160022.24943631055 132338.92067495748 116619.68847739873 139594.04428978206 110998.02429599245 132581.9444752143 107155.06480586383 1.0943508803095252 1.329175819472476 1.4595902544485115 1.4933708427709678 1.235022543402125 1.088326423848301 1.3027293160868219 1.035863535681594 1.2372905071301774 1.0 16.709340516682854 3.004439723573361 24.209589112295586 1.1429865421711178 1.3529139707006574 0.36966939377853747 0.12955521753588023 92.09957291914442 502203.9929735729 0.037519852528841116 0.04466384849938877 1010.2752730741986 -3.004439723573361 0.2099274285295396 GFAFVEYESHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVEYESHR 11 0 B7Z8Z7;A0AV96;A0AV96-2;D6R9D6;D6RBS9;F8W9F8;Q5T0W7;Q8TBY0-2;Q8TBY0-3;Q8TBY0;Q9NQ94-6;Q9NQ94-3;Q9NQ94-2;Q9NQ94;Q9NQ94-4;Q9NQ94-5 B7Z8Z7 RBM47;A1CF;RBM46 RNA-binding protein 47;Probable RNA-binding protein 46;APOBEC1 complementation factor 0 ; 157.38 3.0618000000000004e-05 759940000.0 1045640.0 1770860.0 1757070.0 1743440.0 1430960.0 1289420.0 1442580.0 1042170.0 1357760.0 1249200.0 False True 1040010.3904215245 1829802.0045925223 2004450.1832737783 1964159.3252410695 1613184.274035583 1200285.4303681944 1372796.8942092427 1119942.017432031 1023158.2410518756 1169474.986506073 0.8892968232938976 1.5646354353069527 1.7139743956921043 1.6795223052262092 1.3794089592759373 1.0263455347208157 1.1738574232447798 0.9576451231145807 0.8748868106265926 1.0 20.15742957404182 2.7975838553952777 3.4407588669493534 1.0096313497557043 1.491369735581413 0.4893741569456208 0.2241928873438446 0.2103583375160552 4.99601773842047 0.07441741267521848 0.0774163363003455 627.4568362792087 -2.7975838553952777 0.4817383858257087 GFAFVQYVNER ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVQYVNER 11 0 B4DY08;G3V4W0;G3V5X6;G3V3K6;G3V251;B4DSU6;G3V4M8;P07910;G3V2Q1;G3V576;G3V555;G3V575;P07910-2;G3V4C1;B2R5W2;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 195.58 1.4752e-07 1619980000.0 608760.0 646060.0 842440.0 507690.0 370480.0 467090.0 659790.0 393920.0 1033010.0 515920.0 False True 605482.5037995949 667563.7165484831 961048.2293802537 571963.5019453721 417658.4319929999 434801.1677115905 627873.4370574359 423316.31068522984 778438.5271248218 482993.54389866546 1.2536037208949284 1.3821379705409509 1.9897744835734006 1.1842052739019073 0.8647288090472423 0.900221489922884 1.2999623804271119 0.876443000186445 1.6116955122036625 1.0 18.881644379341278 3.4974531960831294 24.58197598061422 1.0728899853010347 1.536055589361967 0.34523602846928414 0.27717388897798106 642.2615628057519 776513.1475117553 0.07176860033271357 0.10962191728959622 3143.787596008333 -3.4974531960831294 0.4631656040609322 GFAFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVR 6 0 Q01130;Q01130-2;J3KP15;J3QL05;Q9BRL6-2;Q9BRL6 Q01130;Q9BRL6-2 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 0 ; 123.07 0.044078 1803220000.0 1158890.0 1760710.0 1750580.0 1477270.0 1165650.0 1293420.0 1528040.0 1218970.0 2073200.0 1356300.0 False True 1152650.6650047833 1819314.1679783305 1997046.4476858668 1664292.2305320937 1314088.6181511572 1204008.9197831817 1454122.8675203368 1309935.7312042394 1562287.639456716 1269739.77281315 0.9077849569530677 1.4328244313774472 1.5727997897249018 1.3107348971551862 1.0349275074212654 0.9482328155442912 1.1452132938221506 1.0316568475302887 1.2303998605914475 1.0 20.276101423061384 3.2655409543139435 7.32917558188198 1.0642855617832416 1.33541336285848 0.30992325842800583 0.1740298294481696 0.2054157263729648 39.855384341986856 0.04860730454224629 0.06463159775983747 1843.0662833876197 -3.2655409543139435 0.27112780107523826 GFAFVTFDDHDSVDK ddPTM_BT-474_Trastuzumab_2h_R1 22 GFAFVTFDDHDSVDK 15 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;;;;;;;;;;;;;;;;;;;;; 282.24 8.241699999999997e-34 33785351000.0 17707782.0 23251197.0 19601838.0 19796189.0 18897252.0 20497711.0 19735368.0 17867560.0 20532353.0 19995679.0 False True 17612445.26923155 24025099.036499582 22361606.40816981 22302384.497651007 21303705.029412072 19080752.484991588 18780692.853412952 19200928.05683126 15472429.722584425 18719537.647057943 0.9408589892175895 1.2834237409851565 1.194559760490894 1.1913961187581021 1.1380465389197403 1.0192961410022012 1.0032669186337848 1.025715934808303 0.8265390959063644 1.0 24.158041466518853 2.5794560614767628 1.519642638141182 0.9637931414023522 1.1674937609479743 0.46057425573189814 0.09567026836844565 0.3463498754312875 1.6163461207134613 0.04179426714264958 0.03500057044221832 379.7135205800057 -2.5794560614767628 0.20370061954562213 GFAFVTFDDHDSVDKIVIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVTFDDHDSVDKIVIQK 20 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ; 264.38 8.8885e-37 602574000.0 362840.0 675447.0 634038.0 815656.0 737361.0 790939.0 845506.0 679226.0 1214606.0 782946.0 False True 360886.5097553139 697928.8450786662 723305.0392429095 918917.9659689055 831259.5526689437 736263.2486001366 804605.6446334209 729913.2931597427 915282.626186554 732977.7159662051 0.4923567277616296 0.9521828970730198 0.9868035869132186 1.2536779030964065 1.1340857089675425 1.0044824454582504 1.0977218367038573 0.9958192142275119 1.2487182164604227 1.0 19.48340981255887 4.881170830905778 1.6281042359514164 1.0927737355130176 0.10755274525637928 0.7911791616513496 0.09266351214040924 0.6329253602143553 1.222820333708773 0.02404836044275489 1.0926044324179165 76062.54121608331 -4.881170830905778 -0.9852209902566383 down GFAFVTFDDHDTVDK ddPTM_BT-474_Trastuzumab_2h_R1 13 GFAFVTFDDHDTVDK 15 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;;;;;;;;;; 284.04 6.0627999999999995e-34 21858766000.0 8439981.0 7997446.0 7423151.0 7121733.0 7137170.0 8889051.0 8934528.0 7835939.0 10958944.0 8633773.0 False True 8394541.080066048 8263636.1555518005 8468266.13761486 8023343.667592272 8046046.294179122 8274571.826945309 8502330.747428566 8420696.558272008 8258259.0935261175 8082758.215395056 1.0385738205155197 1.0223782445715413 1.047695095157682 0.9926492236660478 0.9954579958675481 1.0237312073971123 1.0519095735456196 1.041809780012136 1.021712993690296 1.0 22.94641626139028 2.463900415440677 24.486318152453748 1.0345260690909797 1.0186087435145332 0.016382964161281155 0.02044540558945838 419.1035331215404 776214.5392543286 0.007264575013678488 0.006081147098573602 291.00497615536375 -2.463900415440677 -0.01591732557644643 GFAFVTFDDHDTVDKIVVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFAFVTFDDHDTVDKIVVQK 20 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 186.05 2.0559000000000003e-17 40229000.0 26506.0 36600.0 36488.0 36911.0 39139.0 46617.0 47456.0 42853.0 70519.0 46807.0 False True 26363.29464109344 37818.20887483281 41625.19324061855 41583.92881542989 44123.11965497198 43394.476514614405 45160.3719804751 46050.90846312481 53140.53735618763 43819.73718651118 0.601630596935865 0.8630405224446259 0.9499188245572554 0.9489771387362513 1.0069234205392312 0.9902952254120849 1.030594313887775 1.0509170392126506 1.2127078063020795 1.0 15.419293211188082 5.301653831266007 0.6346603925749059 1.057129559158187 7.782112840654904e-20 0.8278596338857503 0.06148064307953156 2.520206765712429 0.45915827907442547 0.026159924575137095 2.267974028999479 200287.4933447954 -5.301653831266007 -1.057129559158187 GFAFVTFES(ph)PADAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVTFESPADAK 14 0 P38159;H3BT71;H0Y6E7;H3BR27;P38159-3;O75526;Q8N7X1;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL2;RBMXL3;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1 1 GFAFVTFES(1)PADAK;GFAFVTFES(1)PADAK 200.19 2.0556e-08 157310000.0 308020.0 290740.0 263970.0 245939.0 251670.0 351400.0 335760.0 303030.0 449660.0 345800.0 True False 306361.6545442388 300417.1051439583 301134.68153162865 277074.85218330653 283718.68273504206 327108.54510662373 319518.00607224205 325643.63735516084 338847.31813530135 323730.747945725 0.9463471001389149 0.9279844656409488 0.9302010496145869 0.8558805548793884 0.876403259608225 1.0104339707684025 0.9869868960541579 1.0059088900933086 1.0466948854426108 1.0 18.304434873663528 2.728518061171351 24.724298681835972 1.0080737010456402 0.906917520097143 0.7649241954901083 0.02843978776449171 313.0293774634117 770662.1626248417 0.009928132349413138 0.009464547752969671 535.2024109766113 -2.728518061171351 -0.10115618094849721 GFAFVYFENVDDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVYFENVDDAK 14 0 P62995;P62995-3;H7BXF3 P62995 TRA2B Transformer-2 protein homolog beta 0 ; 229.29 3.1149e-12 339890000.0 580140.0 505490.0 519650.0 530390.0 453860.0 580740.0 560480.0 547560.0 804710.0 626660.0 False True 577016.590699613 522314.9290748421 592812.2031212292 597537.3196178888 511656.3807610208 540594.8107149145 533367.4411584773 588421.7076533413 606400.0030615538 586666.0222893823 0.9835520871788113 0.8903105160864455 1.010476456106768 1.0185306407998247 0.8721425160508753 0.9214694394696981 0.9091500460126961 1.0029926487937852 1.0336375041717303 1.0 19.162179912851233 1.6016031763137932 5.808305993750792 1.0170204647157368 0.9435977695692681 0.31268272627631233 0.046800022280572916 0.1686471382988085 12.058130781229629 0.026366151119375913 0.012428221251925022 39.9579479025657 -1.6016031763137932 -0.07342269514646871 GFAFVYFER ddPTM_BT-474_Trastuzumab_2h_R1 2 GFAFVYFER 9 0 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 0 ; 145.63 0.0032352 0.0 427940.0 588300.0 638270.0 464820.0 330700.0 416550.0 518660.0 375340.0 685800.0 453350.0 False True 425636.0185886034 607881.2098651407 728132.8680577065 523666.1643409321 372812.68478753255 387754.87895322806 493570.4343263908 403349.77673790074 516793.77924918814 424416.814867538 1.0028726564979429 1.4322740960554605 1.7156079649788603 1.2338487684668435 0.8784116739198675 0.9136180880916506 1.1629379822767765 0.9503623857687817 1.2176562311992312 1.0 18.69512228960903 3.465787011154416 9.47930497453768 1.0211791499375338 1.4028483522850879 0.4323377349966566 0.1883582478135835 0.16177202819604744 115.74064039501945 0.05177511143263889 0.07147462512111113 2922.7186521826416 -3.465787011154416 0.3816692023475541 GFAVLEYETAEMAEEAQQQADGLSLGGSHLR ddPTM_BT-474_Trastuzumab_2h_R1 5 GFAVLEYETAEMAEEAQQQADGLSLGGSHLR 31 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 0 ;;;; 233.19 1.1240999999999999e-45 417269000.0 115879.6 152199.1 151549.8 163394.2 156021.4 160708.7 169402.0 146242.7 168318.4 173416.7 False True 115255.71710903395 157264.95503720109 172886.69454552417 184079.8889668153 175889.8004787105 149599.28583658763 161207.37808151622 157156.07287938372 126838.5856710069 162349.0977364937 0.7099252087997663 0.9686838869437722 1.064907024159345 1.133852245151325 1.0834048536826149 0.9214666907444099 0.9929675023089405 0.9680132200947694 0.781270653421657 1.0 17.308739841230796 -0.6433021154330559 7.563618326002517 0.9999921421821397 0.9709798016700959 0.0007374619911518776 0.12453003200164055 0.0 0.0 0.1212461576517265 0.028577993422783013 0.2273515317583764 0.6433021154330559 -0.02901234051204382 GFAYVQFEDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFAYVQFEDVR 11 0 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 0 136.63 0.0029253 0.0 56634.0 69915.0 87102.0 61299.0 40499.0 47754.0 63509.0 46658.0 93523.0 65767.0 False True 56329.088836628944 72242.07851049 99365.20449584408 69059.44711487193 45656.30759362043 44452.8783808245 60436.827042059886 50139.85688452334 70475.50979399492 61569.69375403849 0.9148833687829444 1.173338279041732 1.613865498386152 1.1216467535270496 0.7415386501029289 0.7219928453502944 0.9816002542337756 0.8143593678543278 1.1446460993542342 1.0 15.909932772194885 3.434754379760422 7.184058810359043 0.8863329387680462 1.2507832237677479 0.370208005200241 0.19816688086728154 0.19583395179288374 26.33723496900735 0.0555064713284991 0.07574914766582966 2721.1618883953893 -3.434754379760422 0.36445028499970167 GFAYVQFEDVRDAEDALHNLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GFAYVQFEDVRDAEDALHNLDR 22 1 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 0 ;; 199.89 1.0291e-22 142602000.0 34474.9 70810.4 60096.1 92893.1 71118.4 54444.7 68796.2 48823.8 84718.1 68907.8 False True 34289.29096892147 73167.28135820934 68557.1085153347 104653.35693545593 80174.9066882179 50681.066038038196 65468.26497899443 52467.279878232875 63840.45941937977 64510.0452090644 0.5315341332934523 1.1341998152549504 1.0627353971486853 1.6222800123034316 1.2428282514511773 0.785630607974166 1.0148538071369293 0.813319533542361 0.9896204414752053 1.0 15.977236207448378 2.7423108367560323 24.90183494981941 0.9092140401495392 1.1444415576281732 0.12299493181924126 0.25899450275961633 600.6845948464858 3988612.7653687936 0.08287041071297362 0.0849221788609142 552.4727180460058 -2.7423108367560323 0.23522751747863402 GFCFITFK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFCFITFK 8 0 Q14103-3;Q14103;H0Y8G5;H0YA96;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 114.78 0.006025 180580000.0 198500.0 248660.0 268670.0 219160.0 186410.0 245740.0 250770.0 257050.0 271760.0 262500.0 False True 197431.29805542345 256936.49778185552 306496.40067849617 246905.63352901922 210148.20856136677 228752.57220973764 238639.29706557133 276232.3762734519 204788.38939743233 245747.0252624433 0.8033924229380945 1.0455324840960436 1.2472028922880192 1.0047146380117464 0.8551403962548109 0.9308457425494507 0.971077052960127 1.1240517600506132 0.8333300847842632 1.0 17.906814427462095 3.4797024695612957 24.998531944056 0.9666992030203477 1.048819447844195 0.06664503808787359 0.1253025599346068 286.7061996966114 2776710.62255321 0.03597632008194052 0.04958904633490584 3017.883492777219 -3.4797024695612957 0.08212024482384728 GFCFITFKEEEPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFCFITFKEEEPVKK 15 2 Q14103-3;Q14103;H0Y8G5;H0YA96;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ; 234.67 6.5555999999999985e-18 3990200000.0 3328110.0 2989080.0 2959450.0 2764160.0 2788480.0 3982100.0 4276400.0 3811800.0 6335300.0 4132900.0 False True 3310191.8255477794 3088569.7208629865 3376114.8359994637 3114102.372584287 3143576.3993841545 3706826.7998551135 4069534.194565573 4096255.8719282057 4774050.203670723 3869134.783646292 0.8555379976781884 0.7982584979767241 0.8725761765315904 0.8048575577534007 0.81247528844721 0.9580505738706216 1.051794373193281 1.0587007434431823 1.2338805626129246 1.0 21.883579556133512 2.3842855335314552 1.7523092322378724 1.1002950057655485 0.8263288555144278 0.8066907690147233 0.059471389591527764 0.14242012951983002 0.8899646483425747 0.026737924440084073 0.019361258269406902 242.26213125834795 -2.3842855335314552 -0.2739661502511207 GFCFITYTDEEPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFCFITYTDEEPVKK 15 1 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 ; 233.24 2.0272e-17 2279200000.0 1714610.0 1267590.0 1273400.0 1122730.0 1229640.0 1673280.0 1563590.0 1640570.0 2142550.0 1668080.0 False True 1705378.7302710775 1309780.9668756654 1452683.6514087813 1264867.502883898 1386227.3653527126 1557610.0920774383 1487953.1782061504 1762997.6640456598 1614547.2611991048 1561621.7062848639 1.0920562408985817 0.8387312763419934 0.9302404324698784 0.8099704927213446 0.8876844883583114 0.9974311229209478 0.9528256249370581 1.128953098532342 1.033891405774675 1.0 20.574613580700756 2.2222860086701526 1.7860990725751924 1.0614370322176627 0.9065912542204073 0.31759517890225 0.08148970334389026 0.350361114219669 2.2259816507408936 0.04114954556348649 0.025524125632843984 166.83455553311185 -2.2222860086701526 -0.1548457779972554 GFCFLEYEDHK ddPTM_BT-474_Trastuzumab_2h_R1 6 GFCFLEYEDHK 11 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5;O43390;O43390-3;B4DT28;O43390-2;O43390-4 O60506-2;O43390;O43390-2 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 ;;;;; 260.98 1.146e-20 36152200000.0 17141580.0 16774700.0 15752000.0 15259200.0 14452600.0 19419900.0 18835700.0 17094200.0 26038600.0 17979200.0 False True 17049291.63788857 17333035.748979717 17969744.681161553 17191013.155438963 16293052.94272844 18077448.022527386 17924545.231638465 18369856.00658879 19621735.929364115 16831752.06323245 1.0129243571221154 1.029782026485661 1.0676098729148316 1.0213442481125472 0.9679950656069397 1.0740086922986498 1.0649245048465945 1.0913810955376533 1.1657571865157252 1.0 24.004682022779278 2.5132305914605433 18.052397743996156 1.0853776340385612 1.022984847376439 0.30942155008281313 0.044011317406278845 25.78654057753926 12891.224852361172 0.013999257057668898 0.013177290267569156 326.0097520404045 -2.5132305914605433 -0.062392786662122335 GFCYVEFDEVDSLKEALTYDGALLGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFCYVEFDEVDSLKEALTYDGALLGDR 27 1 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ; 255.68 6.596499999999997e-53 458470000.0 414600.0 555530.0 511070.0 563390.0 524050.0 614040.0 642510.0 541530.0 970770.0 633690.0 False True 412367.83966639056 574020.4802250235 583024.2136999265 634715.1162343217 590784.6612122962 571592.8600946828 611429.3366734455 581941.7184336215 731536.741151552 593247.3616706966 0.6951026946080043 0.9675904476144207 0.982767478405669 1.06989960216063 0.9958487797544265 0.9634983600853602 1.0306482189007045 0.9809427837904978 1.2331057639959937 1.0 19.178274253820526 5.0779559014632465 1.4761454091652715 1.029180819156455 0.2549210341932806 0.6556594179050738 0.0731830050968737 1.6667877140282839 1.7327320070280128 0.01876006029168582 2.4062380171951605 119661.90196850251 -5.0779559014632465 -0.7742597849631745 GFDILGIKPVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFDILGIKPVQR 12 1 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ; 190.3 6.2202e-06 1516790000.0 3018200.0 3550700.0 3155300.0 3301800.0 3134300.0 3391000.0 3601500.0 3315800.0 4205000.0 3727300.0 False True 3001950.346553547 3668882.903056526 3599538.8136407463 3719807.541458816 3533434.5265484233 3156588.1515553873 3427281.6859339364 3563241.833291233 3168734.094113199 3489420.522897919 0.8603005361074868 1.0514304249032058 1.031557758665148 1.0660244350169532 1.0126135567099694 0.9046167209831967 0.982192218863785 1.021155750620738 0.9080975116984771 1.0 21.73455604181804 GFDLDAAWPTFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFDLDAAWPTFAR 13 0 Q9BQS8;Q9BQS8-4;Q9BQS8-3;Q9BQS8-2 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 0 72.652 0.090652 52228000.0 117340.0 149290.0 163820.0 154540.0 142060.0 164760.0 162380.0 141770.0 156650.0 175390.0 False True 116708.25447769952 154259.0274022894 186884.4320510338 174104.74815465676 160150.4989444115 153370.52900332215 154525.0590481613 152349.59729347334 118045.70650245722 164196.46004106628 0.7107842303574039 0.9394783990087758 1.1381757682491642 1.0603441031013237 0.9753590236011003 0.9340672080565164 0.9410986023055179 0.9278494631088272 0.7189296679900008 1.0 17.325063498408493 1.468972246297557 5.566120005872528 0.8478654271239865 0.9646705157282273 0.08613974419263348 0.12088730651130782 0.3334363224469598 23.184280414728228 0.07518815746930237 0.031129534755579644 29.44233475776434 -1.468972246297557 0.11680508860424077 GFDPLLVEEALEMHQCSEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFDPLLVEEALEMHQCSEEK 20 0 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 0 ; 154.74 3.7962e-08 46987000.0 66771.9 78057.0 70323.9 72880.0 65206.0 76511.9 75896.0 70159.0 94419.0 72468.0 False True 66412.40750945556 80655.08005854698 80224.89385370356 82106.60052744525 73509.59759375837 71222.81244263942 72224.6205291246 75394.62084018328 71150.70259977985 67843.03019702373 0.978912753699039 1.1888484318037627 1.1825075268708003 1.2102437094716807 1.0835246801370502 1.0498176781874338 1.0645842368681977 1.1113097487130055 1.0487547857628154 1.0 16.049912988610174 3.0277064626088994 20.62187933505871 1.066594608622023 1.1466667792171983 0.26653050238084386 0.06502718059123548 42.87035879915229 31906.474973467753 0.018626251678411712 0.022260721799966205 1065.8754580095406 -3.0277064626088994 0.08007217059517524 GFDQELNVDWR ddPTM_BT-474_Trastuzumab_2h_R1 3 GFDQELNVDWR 11 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 ;; 199.08 1.1978e-07 361664000.0 536837.0 659973.0 645928.0 645000.0 619088.0 608393.0 623404.0 526066.0 690568.0 648251.0 False True 533946.7292401983 681939.8023428967 736869.0478931766 726656.9338666606 697925.1871779377 566336.223913074 593247.5668854545 565323.7162290214 520386.7695371144 606879.0661843963 0.8798239369126006 1.1236831855651679 1.21419420927807 1.1973669456673441 1.1500234990242317 0.9331945283164478 0.9775383596856512 0.9315261437230914 0.8574801777377477 1.0 19.21104953128281 2.734568537157238 24.43204023004651 0.9385744633235785 1.1239177632461568 0.4641511588491175 0.09260354812772668 222.5317458135632 1361917.320851942 0.030371707879596924 0.029631673970948066 542.7108912079475 -2.734568537157238 0.18534329992257825 GFDQTINLILDESHER ddPTM_BT-474_Trastuzumab_2h_R1 8 GFDQTINLILDESHER 16 0 F2Z2Y6;C9JIZ0;C9JNV3;O95777 F2Z2Y6 LSM8 U6 snRNA-associated Sm-like protein LSm8 0 ;;;;;;; 254.72 1.373e-26 3977843000.0 2389631.0 2941450.0 2713289.0 2850269.0 2932750.0 2600243.0 2710802.0 2460179.0 2917966.0 2810908.0 False True 2376765.492208963 3039354.3851059233 3095296.506869235 3211112.763155339 3306218.3287288696 2420494.321723629 2579670.1509907246 2643770.0495158304 2198872.3780411724 2631513.444900585 0.9031933683693392 1.154983414960567 1.1762419503755077 1.2202532232460817 1.2563942377477666 0.9198107372068061 0.98029905793933 1.0046576256864643 0.8355923023316504 1.0 21.327461335175894 2.725066302059396 24.90912599963834 0.9557317594212418 1.149148733564442 0.48749399728285014 0.09924735159974903 669.2529264261844 1235370.858761828 0.03258561912511149 0.030879272449171602 530.9654984934407 -2.725066302059396 0.19341697414320014 GFEDDRIEALLHK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFEDDRIEALLHK 13 1 Q5JRX3-3;Q5JRX3;Q5JRX3-2;H0Y4F7 Q5JRX3-3 PITRM1 Presequence protease, mitochondrial 0 ;; 115.8 0.00038168 394106000.0 740030.0 781770.0 741900.0 623050.0 751240.0 1131200.0 691100.0 598420.0 941730.0 821550.0 False True 736045.7607050616 807790.7418600563 846353.0712896 701928.0661172449 846905.961051667 1053002.8065583764 657668.85274162 643077.1391151878 709653.2600354875 769117.9756356578 0.9569998154011902 1.0502819690209897 1.1004203491539892 0.9126403079282056 1.101139211252629 1.3691044025958365 0.8550948925593272 0.8361228829474435 0.9226845328234279 1.0 19.55284538577094 GFEDEVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFEDEVKK 8 1 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;C9IZ80;C9JFN4;C9J188;C9JWF5 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 0 ; 114.89 0.0041182 1170310000.0 2657900.0 2047800.0 1821700.0 1620700.0 1678340.0 2480900.0 2391300.0 2080900.0 3259800.0 2235000.0 False True 2643590.1617204514 2115959.7850787584 2078179.525499746 1825880.453825884 1892066.6506994495 2309401.2224104237 2275623.68334689 2236187.3245960963 2456465.969082097 2092360.3865202311 1.2634487723775736 1.0112788402564699 0.9932225532886956 0.8726414749528281 0.9042737871013288 1.103730140031541 1.0875868698371989 1.0687390848165794 1.1740166679256454 1.0 20.99669993097929 2.6823449869889355 24.991063237066715 1.089191508564692 1.000651855599438 0.11775461440795687 0.10520857234522636 598.6956523100631 266153.55166932184 0.035119062365349854 0.03311057675852112 481.22146065479126 -2.6823449869889355 -0.08853965296525401 GFEGSFEELCR ddPTM_BT-474_Trastuzumab_2h_R1 6 GFEGSFEELCR 11 0 E7EPM6;P33121-2;P33121;P33121-3;B7Z3Z9;H0Y9U7 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ;;;;; 275.0 9.022799999999999e-27 2307090000.0 1323728.0 1738660.0 1492550.0 1658040.0 1479415.0 1638880.0 1504799.0 1341977.0 1804370.0 1509443.0 False True 1316601.1955280076 1796530.2470578335 1702688.0665228348 1867947.6939973305 1667809.7310702992 1525588.0831085483 1432006.1234795796 1442122.1381611312 1359707.1908192718 1413109.0554408317 0.9317052993601278 1.2713316358286235 1.204923328434596 1.3218708682144904 1.180241344182747 1.0795968486895215 1.0133726890829757 1.0205313826336273 0.962209664982367 1.0 20.430441378005558 2.5438531691615465 2.4382535842683235 1.0026302409293688 1.1966329950068693 0.44053910790642403 0.0968192868262473 0.26607366897710694 3.147151349735202 0.035783242980721476 0.03148354210879734 349.8268738899488 -2.5438531691615465 0.19400275407750045 GFEKPTENSSAVLLQWHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFEKPTENSSAVLLQWHEK 19 1 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 0 ; 254.44 4.003399999999999e-31 3155100000.0 2475970.0 2155900.0 2134510.0 2099830.0 2229420.0 2669900.0 2573100.0 2475190.0 3385400.0 2788000.0 False True 2462639.6526261303 2227657.8282309314 2435030.4545064843 2365668.2626995808 2513323.4221923826 2485336.097268572 2448629.3228034484 2659901.246560144 2551113.532035867 2610067.4530731114 0.9435157124872775 0.8534866888624169 0.932937749037659 0.9063628834244214 0.9629342794314294 0.952211443555729 0.938147908752479 1.0190929140273206 0.9774128745340158 1.0 21.315655660777033 2.6315292896150098 0.6244738689166758 1.0031346016334506 0.8980692145110502 0.5768913250931642 0.028995720278221664 0.514524047520931 0.42117079951144604 0.022369696439021546 0.021857509587712157 428.08428940093364 -2.6315292896150098 -0.10506538712240043 GFENVIHDKLPLQES(ph)EEEEREER ddPTM_BT-474_Trastuzumab_2h_R1 4 GFENVIHDKLPLQESEEEEREER 23 2 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497 SP100 Nuclear autoantigen Sp-100 1 GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER 211.87 1.9367e-25 999630000.0 655870.0 698990.0 614860.0 617220.0 707630.0 794220.0 820410.0 696630.0 929340.0 822800.0 True False 652338.868794007 722255.4596016222 701426.943541074 695359.988715007 797742.4860483869 739317.4407927798 780723.6340294495 748616.0680154628 700316.6095179943 770288.1995654796 0.8468763628496347 0.9376431574689151 0.9106032572441713 0.9027270430823947 1.0356415773971277 0.9597932841368069 1.0135474416846273 0.97186490515856 0.9091618045207542 1.0 19.55503879854618 3.2690453038670118 24.670750420466472 0.9809001640346595 0.9029853382083574 0.5270133701294759 0.03808973948013331 143.26455439778 115940.55848629959 0.010202196393915557 0.013812075192043959 1857.998263946159 -3.2690453038670118 -0.07791482582630216 GFESPSDNSSAMLLQWHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFESPSDNSSAMLLQWHEK 19 0 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 0 ;; 221.51 2.649e-19 2157840000.0 1228550.0 1361240.0 1283060.0 1226260.0 1169690.0 1462760.0 1388970.0 1162600.0 1609000.0 1393150.0 False True 1221935.6233047375 1406548.050513044 1463703.6954425578 1381504.390268729 1318643.0882042018 1361642.8441666646 1321780.2147193293 1249359.11556318 1212483.5094953962 1304237.9742642792 0.9368962163473514 1.078444331684544 1.1222673502266587 1.0592425749971248 1.011044850881641 1.0440141071147446 1.013450183786395 0.9579226645872995 0.9296489854003509 1.0 20.314775700371047 1.928559013282708 2.335097844166659 0.9568313787965267 1.0471311708763074 0.3499481784270828 0.04784561371402937 0.31246497849513566 3.117537950009264 0.027693076159750786 0.014143102872571764 84.83186467927884 -1.928559013282708 0.09029979207978067 GFFDPNTEENLTYLQLMER ddPTM_BT-474_Trastuzumab_2h_R1 1 GFFDPNTEENLTYLQLMER 19 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 147.1 2.5319e-07 56017000.0 9464.1 4649.1 9502.8 12481.0 10811.0 12847.0 14385.0 12360.0 9563.9 4343.6 False True 9413.146337160359 4803.842483059702 10840.71164018169 14061.093320294247 12187.716768182687 11958.91712858509 13689.142593963546 13282.36596280827 7207.004994694229 4066.387729256949 2.314866895115391 1.1813537721690668 2.665931623338489 3.457883078666389 2.9971851135823067 2.9409190477688023 3.3664135113020723 3.2663796094120507 1.7723359095447508 1.0 11.989532067087037 4.1016182050618335 6.736974303879185 2.8805758526798892 1.7596901905521953 0.15526251938322777 0.7840459102359124 0.2626442714277441 15.078954080308488 0.18153419736489743 0.3983720395427275 12636.249869342506 -4.1016182050618335 -1.120885662127694 GFFDPNTHENLTYLQLLER ddPTM_BT-474_Trastuzumab_2h_R1 4 GFFDPNTHENLTYLQLLER 19 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 Q15149-3;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 ;;; 268.3 8.4434e-32 4986880000.0 3164250.0 3888870.0 3704780.0 3981080.0 3858750.0 3881730.0 4036180.0 3339900.0 4055660.0 3685640.0 False True 3147214.0295812283 4018308.6870784448 4226380.82147497 4485084.319810669 4350138.939896865 3613395.1417095475 3840934.553695084 3589140.2976685585 3056196.936059725 3450419.2997648474 0.9121250944184427 1.1645856164067654 1.2248890509518673 1.2998664597419611 1.2607566101294805 1.0472336338820638 1.113179071875946 1.0402040986477108 0.8857465341293479 1.0 21.718340260181485 1.7784925428168097 1.331597140657299 0.9482293650460923 1.1711557827878507 0.3640610343261629 0.10788651804926808 0.45857470852480475 1.532939977815444 0.08950579660537142 0.03568737866946051 60.04716982402798 -1.7784925428168097 0.22292641774175836 GFFDPNTHENLTYR ddPTM_BT-474_Trastuzumab_2h_R1 4 GFFDPNTHENLTYR 14 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 146.77 8.2154e-06 3172990000.0 5607100.0 6928300.0 6320200.0 6835900.0 6405300.0 6506700.0 6408500.0 5552000.0 7195700.0 6591600.0 False True 5576911.996607369 7158904.277254202 7210029.223836798 7701324.239099389 7220976.987812467 6056907.144124282 6098496.372152616 5966318.432484751 5422416.152440037 6170918.444647312 0.9037409984643068 1.1601035310171495 1.1683883506985604 1.2480029201778804 1.1701624405806208 0.9815244194935157 0.9882639718634565 0.9668444796349508 0.878704880169575 1.0 22.557053797260895 2.6860437150841663 5.703254984036926 0.9621981579000739 1.1403878789227084 0.4673903557846173 0.08887831435546538 0.1887987961608749 14.174212716104345 0.029554956908713112 0.02807416765751293 485.3373506454846 -2.6860437150841663 0.17818972102263453 GFFDPNTHENLTYVQLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFFDPNTHENLTYVQLLR 18 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ; 264.38 5.8296e-31 2565300000.0 1362800.0 1548870.0 1700460.0 1682690.0 1488620.0 1796050.0 1828860.0 1344360.0 1825600.0 1718980.0 False True 1355462.8362213147 1600423.2016383135 1939869.9873367194 1895718.3814699068 1678186.9332579882 1671893.2909469334 1740391.0548763438 1444682.9697217585 1375705.3417866984 1609273.224707181 0.8422826002513967 0.9945006087636374 1.2054323389924622 1.177996596454183 1.0428228764965293 1.0389120164794554 1.0814764256038751 0.8977238591567501 0.854861263249451 1.0 20.61797785900641 1.7202222031098844 6.455371901286988 0.9080919671002431 1.0619330693426214 0.2797532675615533 0.09985985903281418 0.16777366999642168 17.832765175096966 0.05282322128502438 0.027296709732720584 52.50760422648648 -1.7202222031098844 0.15384110224237835 GFGDGYNGYGGGPGGGNFGGS(ph)PGYGGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGDGYNGYGGGPGGGNFGGSPGYGGGR 28 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR 273.63 1.1245999999999995e-61 984150000.0 820740.0 1023390.0 913290.0 965890.0 862040.0 980640.0 1034810.0 831310.0 979530.0 1036120.0 True False 816321.2270327855 1057452.9174976812 1041873.2935410133 1088171.5749650684 971815.6842886142 912850.664978258 984752.2869419124 893346.5735066461 738137.9565295372 969993.934533038 0.8415735377002831 1.0901644637672365 1.074102895336741 1.121833380833378 1.0018781042754181 0.9410890444564592 1.0152148914374184 0.9209816079280017 0.7609717238952449 1.0 19.88761620045156 1.6216858625357382 3.657641561885062 0.8699389369799646 1.0189925871482415 0.2559432701069072 0.09260503431756102 0.21897756443918287 6.876157740744525 0.05484184022124017 0.023965057322510513 41.849074943532045 -1.6216858625357382 0.14905365016827687 GFGDSFGR ddPTM_BT-474_Trastuzumab_2h_R1 5 GFGDSFGR 8 0 A0A0A0MQW0;A0A0A0MR39;A0A087WUT0;H0YN19;A0A0C4DGV1 A0A0A0MQW0 MYEF2 0 ;;;; 202.2 0.00024575 681710000.0 2347550.0 2912190.0 2614760.0 2834620.0 2743760.0 2718990.0 2797880.0 2448260.0 3029420.0 2659520.0 False True 2334911.051637325 3009120.4836939694 2982895.480098652 3193482.6013598605 3093161.5724603594 2531032.6211140025 2662535.8554604594 2630961.5932123796 2282860.033148254 2489787.1566703734 0.9377954438321682 1.2085854309402526 1.1980524006267745 1.2826327715621075 1.2423397575063753 1.0165658595888925 1.069382918265634 1.0567014076539782 0.9168896333296032 1.0 21.24759098585815 2.7264496366414455 24.313549367693316 1.0235803942525474 1.1831937775794024 0.4183091054353746 0.09468645809203677 539.0924429255671 1082259.5197433515 0.03102445876387804 0.029468835419461308 532.6594503987081 -2.7264496366414455 0.15961338332685493 GFGEYSRS(ph)PTF ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGEYSRSPTF 11 1 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 GFGEYS(0.007)RS(0.993)PTF;GFGEYS(0.001)RS(0.998)PT(0.001)F;GFGEYS(0.002)RS(0.998)PTF 146.5 9.4022e-05 377570000.0 307053.0 508050.0 465080.0 686610.0 543080.0 451710.0 524180.0 412719.0 663050.0 548230.0 True False 305399.86076479504 524960.1371272898 530559.2214521728 773534.7556002915 612238.0189126494 420484.35091096564 498823.41083794297 443518.18752461724 499650.21191480523 513241.4920366824 0.5950412534904086 1.0228326144172495 1.0337418733367971 1.5071555351666803 1.1928848863779928 0.8192719361842101 0.9719078028132049 0.8641510758699885 0.9735187424774578 1.0 18.969278281528172 2.7374962474279996 24.990424121337643 0.9169326722799974 1.0899276934009599 0.09740760756927769 0.2151042551440293 216.5180733633833 5083608.669739046 0.07163045346603762 0.07106667241281478 546.3818287856952 -2.7374962474279996 0.17299502112096243 GFGFGQGAGALVHS(ph)E ddPTM_BT-474_Trastuzumab_2h_R1 6 GFGFGQGAGALVHSE 15 0 P21291;E9PP21 P21291 CSRP1 Cysteine and glycine-rich protein 1 1 GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E 174.59 9.4833e-07 5786780000.0 4458990.0 5213990.0 4862840.0 5258990.0 4597950.0 5141450.0 5174410.0 4235560.0 5143880.0 5322270.0 True False 4434983.29328036 5387534.505226493 5547485.60343701 5924777.5947836125 5183471.678315199 4786033.66317146 4924104.020134235 4551638.994937886 3876239.6984606427 4982598.171975404 0.8900945129841895 1.0812701163679326 1.113372062519272 1.1890940008181858 1.0403150122499556 0.9605497971099656 0.9882603112227333 0.9135071378098587 0.7779555092888147 1.0 22.248466800043655 2.3027470380419137 1.358601618407133 0.8940479513208744 1.0723204794009467 0.3750693405665809 0.08915441128590113 0.43868492040397866 1.6009543552605587 0.05271890278996924 0.03267024422377763 200.79229242264591 -2.3027470380419137 0.1782725280800722 GFGFILFK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFILFK 8 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 ; 168.43 0.00071391 296110000.0 530880.0 651920.0 679210.0 529080.0 461070.0 605550.0 642970.0 551790.0 933790.0 641610.0 False True 528021.8010663128 673618.7631060374 774836.8642008464 596061.4737522054 519784.5315240027 563689.7538113723 611867.0847160751 592967.3717328454 703669.9666449385 600661.900490043 0.8790665774465343 1.1214607794442655 1.2899717188133704 0.9923410711848306 0.8653529233333138 0.938447658077685 1.0186547277543165 0.9871899170716171 1.1714909270437455 1.0 19.196193632196213 3.53825534767603 24.999852097274147 0.9889784938796365 1.106272641809422 0.130309380623159 0.11736754791305129 422.64445252820605 172832.47376529593 0.031605144156583234 0.04896240318271687 3453.467296325785 -3.53825534767603 0.11729414792978543 GFGFITFEDEQSVDQAVNMHFHDIMGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGFITFEDEQSVDQAVNMHFHDIMGK 27 0 K7EQ55;K7EK33;Q96EP5;Q96EP5-2;K7EQ02 K7EQ55 DAZAP1 DAZ-associated protein 1 0 ;; 412.54 8.878099999999994e-166 1136700000.0 966810.0 1087330.0 1026870.0 1062100.0 967560.0 1112510.0 1100050.0 151348.0 1307910.0 691928.0 False True 961604.8023826894 1123521.1217451363 1171444.370285955 1196561.7511004326 1090773.0308225732 1035604.8022668482 1046836.3789009104 162642.3562895716 985593.1055960985 647768.562650635 1.4844882228428204 1.7344483609203676 1.8084304145487797 1.8472056535194679 1.6838931274453752 1.5987265544799019 1.6160654271601431 0.2510809657449994 1.521520435575174 1.0 19.305118927737283 1.8859090323587717 8.795183872088765 0.856634950841944 1.698008187378465 0.5650450385735393 0.3034869420340046 0.19807157082873986 14.062570779320618 0.12081166605243251 0.07614384390003591 76.89693545307148 -1.8859090323587717 0.841373236536521 GFGFITFTNPEHASVAMR ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGFITFTNPEHASVAMR 18 0 P98179 P98179 RBM3 RNA-binding protein 3 0 ;; 157.83 1.4977e-09 3886010000.0 1901680.0 3110210.0 3581780.0 3673590.0 3454230.0 3455350.0 3548330.0 2913420.0 2874400.0 3291090.0 False True 1891441.566176512 3213731.459688351 4086063.490610134 4138666.1173383277 3894105.7156747445 3216489.7875189893 3376683.7219630643 3130834.194446995 2166042.634986678 3081049.818556091 0.6138951583272096 1.0430637766170365 1.3261919576896146 1.3432649132813699 1.2638892406808553 1.0439590324528967 1.0959523282052999 1.0161582508634135 0.7030209709500175 1.0 21.55499057932323 1.4937931081185352 3.6893631799036037 0.8495855290405689 1.1219297173008251 0.1822584783394844 0.2070415183797828 0.3259656204748692 9.165723621754267 0.14732440475458022 0.05611239765385027 31.174041421049836 -1.4937931081185352 0.2723441882602562 GFGFVDFNS(ph)EEDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGFVDFNSEEDAK 14 0 P19338;H7BY16 P19338 NCL Nucleolin 1 GFGFVDFNS(1)EEDAK;GFGFVDFNS(1)EEDAK;GFGFVDFNS(1)EEDAK 183.7 1.4456e-06 198634000.0 394195.0 348609.0 288171.0 290723.0 288557.0 356643.0 363312.0 364391.0 557284.0 385351.0 True False 392072.6979191813 360212.2398264092 328742.97197276604 327528.50199149933 325303.02353866363 331989.1088573186 345737.2105733808 391583.7067600052 419948.82542301546 360757.56926441035 1.0868038021173692 0.998488377003113 0.9112573095640861 0.9078908660442925 0.9017219630400576 0.9202554212077905 0.9583643976711113 1.0854483457088642 1.1640748835271755 1.0 18.460670139494702 1.7254339615426253 4.412169304248859 1.095507798252648 0.9491191556144444 0.4505640868594979 0.06438049478867197 0.15191061735720834 6.839373167277656 0.035379030775797286 0.01757674718654916 53.14151868117365 -1.7254339615426253 -0.14638864263820361 GFGFVDFNSEEDAK ddPTM_BT-474_Trastuzumab_2h_R1 6 GFGFVDFNSEEDAK 14 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;;; 284.15 3.794e-33 2241550000.0 2559110.0 2281530.0 2074197.0 2037202.0 2035001.0 2602280.0 2543850.0 2442210.0 3698990.0 2634580.0 False True 2545332.0361038516 2357469.3468359923 2366225.9083564803 2295111.5643209754 2294146.314954078 2422390.5087082153 2420794.2570493007 2624460.111491099 2787423.4784265882 2466438.848822584 1.0319866788178955 0.9558190943843546 0.9593693796568511 0.930536577226151 0.930145223770395 0.9821409153787064 0.9814937265543507 1.0640685913392707 1.1301409235251199 1.0 21.233998087917858 1.7725506610791004 3.0632677287142482 1.0753281060216597 0.9623174974652557 0.5531954365361095 0.040059267156733275 0.15690793486414603 2.8990249331956295 0.02207902318981081 0.01070944737934677 59.231217691796914 -1.7725506610791004 -0.11301060855640399 GFGFVEFEDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GFGFVEFEDPR 11 0 Q13243;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ;;; 138.08 0.00015124 1984990000.0 1293730.0 1639310.0 1480760.0 1509420.0 1456780.0 1498150.0 1472930.0 1341020.0 1490290.0 1339030.0 False True 1286764.7014269142 1693873.4423661793 1689238.1370033512 1700512.41723568 1642292.2979884557 1394586.416765763 1401678.7487609824 1441093.721961582 1123027.9983628916 1253571.958998742 1.0264785297644055 1.3512375019293799 1.3475398240022745 1.356533548017395 1.3100901676998216 1.1124901181418039 1.1181478164847727 1.149589947044299 0.8958624116479766 1.0 20.257613383135375 1.9432709212081136 0.9171128749124127 0.9751016962784795 1.286012202490517 0.5282945868067978 0.10853900010353278 0.45285754696091174 0.7022024562499861 0.09177137843714288 0.04289994141037995 87.75480817154924 -1.9432709212081136 0.3109105062120374 GFGFVEFEDPRDADDAVYELDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFVEFEDPRDADDAVYELDGK 23 1 Q13243;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ; 199.94 2.3001999999999995e-24 580420000.0 477580.0 605760.0 554720.0 707070.0 582830.0 704650.0 762790.0 622790.0 1060650.0 751070.0 False True 475008.76234412595 625922.3554103471 632819.7542873246 796584.9895024787 657049.9457959416 655939.2040676799 725890.9335592259 669265.7522635402 799267.0194818475 703136.0695766229 0.6755573819874459 0.8901866686873733 0.8999961482112023 1.1329030382158092 0.9344563225032233 0.9328766258039337 1.0323619637324313 0.951829640408752 1.1367174208017912 1.0 19.423444378397086 4.819217537497762 1.271595919898399 1.0049635699715327 0.48871392939395825 0.6589399766109112 0.07358917063882363 0.9948160865480167 1.2242173670622805 0.01986709180848138 0.7027117715184843 65950.41572322637 -4.819217537497762 -0.5162496405775745 GFGFVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFGFVR 6 0 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;K7EN94;A0A0A0N0M3;A0A087WXQ5;Q13148-4;A0A087WV68;A0A087WXV3;K7EJM5;A0A087WX29;Q5JQF3;Q96DU9-2;Q96DU9 Q13148 TARDBP;TDP43;PABPC5 TAR DNA-binding protein 43;Polyadenylate-binding protein 5 0 100.91 0.086377 542170000.0 444070.0 646570.0 594530.0 607390.0 536190.0 548190.0 624950.0 517050.0 668320.0 512120.0 False True 441679.1764608157 668090.6915901812 678234.6562526018 684285.511722901 604470.6182528794 510294.91560045595 594718.7809591604 555634.8965267006 503621.4910291878 479436.06315200933 0.9212472953265878 1.3934927781566513 1.4146508958746427 1.4272716725231878 1.2607950563394035 1.064364896219045 1.2404548315561312 1.1589342964184397 1.0504455749911126 1.0 18.870978906940206 2.8990310625078166 5.419494284031172 1.128783888406553 1.3099068691198876 0.2562115069459334 0.14942368473966994 0.3281042422894104 14.264875444836385 0.04582722415124058 0.048999351838478346 792.5580154262317 -2.8990310625078166 0.18112298071333455 GFGFVS(ph)FER ddPTM_BT-474_Trastuzumab_2h_R1 4 GFGFVSFER 9 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 1 GFGFVS(1)FER;GFGFVS(1)FER;GFGFVS(1)FER;GFGFVS(1)FER 135.86 0.00021924 144272000.0 146613.0 154586.0 120008.0 144032.0 129030.0 150547.0 131981.0 118045.0 139342.0 139702.0 True False 145823.65189823578 159731.30156078955 136904.08327176466 162266.4364320663 145461.2056792722 140140.04023951886 125596.57481361869 126854.11732036428 105003.03118713954 130786.09875510029 1.1149782223513955 1.2213171207124218 1.0467785534922975 1.240700945869741 1.1122069322646542 1.0715209152460003 0.9603205234281122 0.9699357846731194 0.8028607947375196 1.0 16.996849679470994 2.318867929452231 1.4488226067397827 0.916525845955701 1.1542844145375575 0.6803740013294186 0.06973537639982565 0.22327333198260801 0.9347209797334699 0.03608659713278043 0.023121902824488467 208.3857078136337 -2.318867929452231 0.2377585685818565 GFGFVSFER ddPTM_BT-474_Trastuzumab_2h_R1 4 GFGFVSFER 9 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ;;; 170.66 0.00013385 1987503000.0 1593350.0 1926640.0 1884910.0 1759550.0 1422030.0 1667450.0 1702010.0 1397000.0 2244480.0 1651750.0 False True 1584771.580637829 1990767.0477215236 2150288.9440685804 1982308.8495892754 1603117.0914678415 1552183.1062550962 1619677.2739903985 1501251.2338222608 1691357.9784911298 1546333.9008656796 1.0248572961833347 1.28741085389581 1.3905722062128951 1.281941014472699 1.036721170356786 1.0037826276628494 1.047430489031935 0.9708454512843698 1.0937857454617415 1.0 20.560420444285885 3.2201755742163365 8.29420597119744 1.0205189881445054 1.259580156067651 0.5830961302492697 0.09112171795150593 0.11926664006236673 41.87712481044659 0.026545290267207988 0.0326026928957201 1660.2579718643397 -3.2201755742163365 0.23906116792314558 GFGFVTFDDHDPVDK ddPTM_BT-474_Trastuzumab_2h_R1 17 GFGFVTFDDHDPVDK 15 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;;;;;; 355.96 3.307799999999998e-82 56837043000.0 43779853.0 42336125.0 37836519.0 35169568.0 35813650.0 47481029.0 46483042.0 37890710.0 57873945.0 43943818.0 False True 43544147.13584689 43745257.32789699 43163571.99428125 39622031.70278299 40374306.04336563 44198777.22354988 44234479.67599565 40718307.185326755 43611686.72588169 41139285.91304464 1.0584565621261721 1.0633450813988494 1.0492056688955493 0.9631190922110645 0.9814051252300311 1.0743690913102388 1.0752369345810537 0.9897669899130553 1.0600982918872952 1.0 25.294013416298732 3.9826789758709658 24.702502200127203 1.0209770868355676 1.0597444770452382 0.17377508192365343 0.036969615889173454 1129.6670660469495 1611089.8241959915 0.00993577098225574 0.01846635737839491 9609.017312973794 -3.9826789758709658 0.03876739020967057 GFGFVTFDDHDPVDKIVLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFVTFDDHDPVDKIVLQK 20 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 302.26 3.609e-55 3960300000.0 3310300.0 5575800.0 5069400.0 6612700.0 5837700.0 5940600.0 7301300.0 5272900.0 10994700.0 7009600.0 False True 3292477.712608905 5761387.132357727 5783127.455985302 7449867.141984596 6581096.492241239 5529940.304668214 6948108.225325418 5666390.573243672 8285203.506431961 6562241.326779512 0.5017306661936985 0.8779602647111406 0.8812732065163827 1.1352625987073681 1.0028732813261199 0.8426907864697639 1.0588010832474632 0.8634840279524606 1.2625569670260834 1.0 22.645757219344198 5.00316258625534 1.351886090652239 1.0006227771113343 5.285356875547893e-09 0.6202273520029724 0.11988817126775231 1.549268848280188 1.5839079576877162 0.03131959438265622 2.50992182686999 100730.87031099552 -5.00316258625534 -1.0006227718259775 GFGFVTFENIDDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFVTFENIDDAK 14 0 Q14011;K7EMY9;K7EPM4;K7EQR7;D6W5Y5;Q14011-2;K7EJV1;K7ENX8;K7ELV6;K7EJV5;K7ELT6;K7ER40 Q14011 CIRBP Cold-inducible RNA-binding protein 0 ; 176.51 5.1516e-06 375380000.0 368640.0 335590.0 323390.0 324460.0 344570.0 473870.0 453570.0 378270.0 480640.0 451370.0 False True 366655.28319975414 346759.91028156085 368920.5010437305 365536.6027323666 388448.94707360165 441112.48226999416 431629.0862943381 406498.4282161392 362192.712246033 422563.1801627007 0.8676934016318691 0.8206108022664135 0.8730540623574538 0.8650460330964543 0.9192683255650339 1.0438971093036344 1.0214545577022274 0.9619826035472943 0.8571326827542733 1.0 18.688807538655016 3.0776807797696843 3.3947395076477562 0.9777515723478288 0.8548769247364172 0.5739460893968953 0.048629820343956666 0.17875547448066137 4.134614507116593 0.015409101835029188 0.01857845224691818 1195.861212231058 -3.0776807797696843 -0.12287464761141165 GFGFVTFENIDDAKDAMMAMNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFVTFENIDDAKDAMMAMNGK 23 1 Q14011;K7EMY9;K7EPM4;K7EQR7;D6W5Y5;Q14011-2;K7EJV1;K7ENX8;K7ELV6;K7EJV5;K7ELT6;K7ER40 Q14011 CIRBP Cold-inducible RNA-binding protein 0 ; 352.22 1.0255999999999995e-101 1408640000.0 875930.0 881960.0 940770.0 921750.0 841050.0 1136250.0 1092670.0 954420.0 1566720.0 971120.0 False True 871214.0902049714 911315.5054439208 1073222.2386805713 1038443.4554908433 948152.7322060916 1057703.7119447982 1039813.3776952494 1025643.6668465596 1180622.8489724214 909142.2901823381 0.9582813379303257 1.0023904016841487 1.1804777428903073 1.1422232434953306 1.0429090610403016 1.1634083282306278 1.143730072755392 1.1281442717188483 1.298611737372414 1.0 19.79414658324042 4.339464547421226 5.148586478705106 1.1392116222347477 0.9699135469499437 0.41286669294858636 0.07544323615856219 0.17517013699753617 7.195513873857854 0.017430572096632672 0.050113842676661406 21850.659398037616 -4.339464547421226 -0.169298075284804 GFGFVTFSSMAEVDAAMAARPHS(ph)IDGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGFVTFSSMAEVDAAMAARPHSIDGR 27 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR 196.18 3.8653000000000004e-25 175070000.0 35973.0 44072.9 43525.6 45096.1 41925.0 47142.1 42268.2 41351.5 53048.6 52877.3 True False 35779.32536497603 45539.839833869344 49653.62614870276 50805.261636192714 47263.9002410563 43883.27758756685 40223.52568579563 44437.35890866234 39975.48334482131 49502.625443465855 0.722776318315431 0.9199479709591932 1.0030503575090044 1.026314486980383 0.9547756269015211 0.8864838419061926 0.8125533812692952 0.8976768102817442 0.8075426906493081 1.0 15.595217422192668 2.5920544204262175 5.426987139634863 0.8692622024521633 0.9346188547953145 0.04688615736793611 0.09140970439879821 0.569348750411222 23.36382601755301 0.03045393267386483 0.028528851214424014 390.8898742199534 -2.5920544204262175 0.06535665234315113 GFGFVTFSSMAEVDAAMAARPHSIDGR ddPTM_BT-474_Trastuzumab_2h_R1 5 GFGFVTFSSMAEVDAAMAARPHSIDGR 27 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;; 224.99 1.0599999999999999e-34 2494663000.0 381456.4 528157.0 496178.0 591058.0 524936.0 622100.0 615986.0 489834.0 697817.0 569022.0 False True 379402.6811261901 545736.386467351 566035.5495435109 665885.8821974571 591783.4880605625 579095.6912658821 586188.4038849651 526387.9004066525 525849.3506187382 532706.528795756 0.7122170662782624 1.0244597296396019 1.0625654444729613 1.2500051082587034 1.1108996343603235 1.087082023520519 1.1003965076420426 0.9881386315962983 0.987127662594038 1.0 19.022981436964447 4.752899641197835 2.8976045070360614 1.0769046527679507 0.6417466970381672 0.6826721366049978 0.07337778601658329 0.2638230261435985 3.066361299477617 0.01954076542479528 0.27337955314884166 56610.84549297751 -4.752899641197835 -0.43515795572978344 GFGFVTYATVEEVDAAMNAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGFVTYATVEEVDAAMNAR 20 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;A0A2R8Y4L2;F8W646;F8VYN5 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ;; 225.13 1.2362999999999999e-24 149002000.0 108785.0 125973.0 125596.0 119410.0 125141.0 128016.0 124702.0 122971.0 128151.0 129898.0 False True 108199.3136471496 130165.93515271337 143278.82509999798 134527.29375661685 141076.9645811812 119166.55523724975 118669.68785209878 132147.72045408533 96569.90318542243 121607.79842872715 0.8897399265933088 1.0703749005784529 1.178204251300314 1.1062390364336845 1.1600980069042586 0.9799252743407884 0.9758394559017499 1.0866714319438608 0.7941094603568608 1.0 16.891876222903353 2.707937071649041 23.072206801332772 0.9827818725339568 1.087154807411772 0.23601616269167336 0.09998613219309185 437.44177437859076 329573.5022554131 0.03265010612483003 0.03078833280273345 510.4310342405969 -2.707937071649041 0.1043729348778153 GFGFVTYATVEEVDAAMNARPHK ddPTM_BT-474_Trastuzumab_2h_R1 5 GFGFVTYATVEEVDAAMNARPHK 23 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;A0A2R8Y4L2;F8W646;F8VYN5 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ;;;; 266.64 2.2366999999999998e-44 5072920000.0 3479460.0 5055606.0 4214743.0 4855116.0 4744513.0 4681718.0 5232478.0 4429867.0 6748118.0 4969471.0 False True 3460726.973964351 5223878.789531634 4808142.179197116 5469773.187793742 5348698.607618236 4358081.854238743 4979363.049132936 4760446.169948838 5085134.739048509 4652315.10620182 0.743872006724349 1.122855754668871 1.0334945224986092 1.175709955781413 1.1496853685787736 0.9367555195109536 1.0702978915798589 1.0232424204463004 1.0930331722951685 1.0 22.149517384699156 4.744704766105033 24.740493688662717 1.06689476854954 0.7438718405354418 0.6671303502533312 0.0685227732875219 359.02561409422765 1445632.983964378 0.016298714710633225 0.15040189954873082 55552.64813292174 -4.744704766105033 -0.32302292801409827 GFGFVTYSCVEEVDAAMCARPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFVTYSCVEEVDAAMCARPHK 23 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 167.53 6.4324e-12 631630000.0 363560.0 566460.0 511300.0 628370.0 518300.0 549690.0 523790.0 462470.0 737270.0 504000.0 False True 361602.6333553129 585314.2786676987 583286.5957007309 707921.5775717724 584302.4327952169 511691.2241310768 498452.2766278876 496981.85977507586 555579.6874118531 471834.2885038909 0.7663763362808912 1.2405081464588643 1.2362106992059372 1.500360602906744 1.2383636523067114 1.0844723170788746 1.05641384861706 1.053297464563086 1.177489006094714 1.0 18.847920738408526 2.716236312305725 8.82245007325506 1.073900474727456 1.2179317262611484 0.10361649487369773 0.1737699322423499 0.6533533275314685 240.8437095934138 0.05713565769158152 0.054768064316221374 520.2790185284707 -2.716236312305725 0.14403125153369234 GFGFVYFQNHDAADK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGFVYFQNHDAADK 15 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ; 225.09 1.046e-12 8498000000.0 1988840.0 1865500.0 1817920.0 1806200.0 1806170.0 2196510.0 2177100.0 2052700.0 2786360.0 2049900.0 False True 1978132.306420898 1927592.0397814363 2073867.334356097 2034864.7348061395 2036175.0434916767 2044670.433728374 2071785.355670357 2205882.897399399 2099698.913311121 1919073.6269923167 1.0307745771698928 1.0044388149934977 1.0806606402102363 1.0603369803978273 1.0610197622708661 1.0654465805634044 1.0795757528685228 1.149451936795456 1.0941210820566019 1.0 20.871978632217044 3.957042701493511 0.6684281267486567 1.092728273229818 1.0052003194391668 0.15711919819424125 0.03838569823680162 1.8325877434173758 1.1848165847650072 0.019386434340375 0.1065291314853527 9058.216603678606 -3.957042701493511 -0.08752795379065126 GFGHIGIAVPDVYSACK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGHIGIAVPDVYSACK 17 0 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 ; 160.78 3.0476e-09 1188550000.0 1621460.0 1482930.0 1483630.0 1349400.0 1233540.0 1591350.0 1559210.0 1350020.0 2306440.0 1755860.0 False True 1612730.2395211423 1532288.4285998852 1692512.2080568634 1520233.901642901 1390624.0072355992 1481343.7201349644 1483785.0555393768 1450765.3476626545 1738048.7667125931 1643799.5115326252 0.9810991110573364 0.9321626012476603 1.0296342079325842 0.9248292696142026 0.8459815187188044 0.9011705562278747 0.9026557345524113 0.882568304397419 1.0573362228901584 1.0 20.64860291861388 3.5106782060528716 23.925523756552955 0.9167301172390088 0.9762761869868454 0.09408199574376264 0.061751825560710426 669.3838284027632 477256.68917158205 0.01596813844436692 0.024715528172668245 3240.9938434504525 -3.5106782060528716 0.059546069747836605 GFGQEVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGQEVHR 8 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 ; 114.89 0.0025684 209557000.0 217068.0 312230.0 283650.0 299850.0 247170.0 258060.0 245025.0 231050.0 321200.0 283540.0 False True 215899.33000652213 322622.3868029795 323585.4544700025 337810.9792556865 278645.63440863177 240220.91960789805 233172.20466360234 248292.12424812705 242044.5638594912 265444.23444919323 0.813350986712977 1.2154055162374617 1.2190336518005542 1.27262503914111 1.0497332329964972 0.9049769723059364 0.8784225626427465 0.9353833763364366 0.9118471318909706 1.0 18.018049280347917 2.926812939893002 4.181058352864564 0.9208479421353162 1.144760147779008 0.385336430787073 0.12088338122684127 0.216687356898362 7.196988416407062 0.03737120872715582 0.04071715998387538 844.9148435202296 -2.926812939893002 0.22391220564369174 GFGS(ph)EEGSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GFGSEEGSR 9 0 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 1 GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(0.979)EEGS(0.021)R;GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR 210.44 7.1076e-06 3434690000.0 3374180.0 4054450.0 3561830.0 4010730.0 3617270.0 3878800.0 3775540.0 3413030.0 4085110.0 3668190.0 True False 3356013.7897866396 4189399.9172832225 4063304.704018645 4518488.006770593 4077907.893260953 3610667.685713075 3592902.706236575 3667727.6296151755 3078389.3781695045 3434082.973704544 0.9772663664460948 1.219947202604681 1.1832284586983417 1.3157771787605466 1.1874808863053994 1.0514212129877687 1.0462480766330182 1.0680369862055445 0.89642253892563 1.0 21.711493467227385 2.6598823689984403 3.564230103793226 1.0191909989434345 1.1877304480896533 0.45671918972899495 0.08967268645833157 0.23400142660193243 5.744713084196342 0.030508472234485783 0.02898307135151547 456.9644015797935 -2.6598823689984403 0.16853944914621888 GFGS(ph)LPCILNACSGDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFGSLPCILNACSGDAK 17 0 Q8WWL2-4;Q8WWL2-3;Q8WWL2-2;Q8WWL2 Q8WWL2-4 SPIRE2 Protein spire homolog 2 1 GFGS(1)LPCILNACSGDAK;GFGS(1)LPCILNACSGDAK;GFGS(1)LPCILNACSGDAK 131.56 2.786e-05 158863000.0 211540.0 201929.0 155136.0 154292.0 126494.0 165873.0 175923.0 162905.0 308283.0 183427.0 True False 210401.09214430346 208650.08469634206 176977.80033371496 173825.3513800849 142602.26111132198 154406.5899330422 167412.93239887737 175061.79831482863 232310.7854305587 171720.53182024445 1.2252529730373156 1.2150561291922573 1.0306152587447945 1.0122572387677191 0.8304322121515252 0.8991737231205041 0.9749150589291429 1.0194575829644053 1.3528422196696874 1.0 17.38970302038341 4.2142529429792495 3.9202762300155247 1.0015308967337837 1.2265189998117025 0.28885078679772236 0.12820881505438034 0.2506337098567771 8.285824031258617 0.03336270113033157 0.08787544418322378 16377.701182515664 -4.2142529429792495 0.22498810307791883 GFGSEEGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGSEEGSR 9 0 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 0 ; 219.72 1.1227e-06 1645750000.0 1261560.0 1539100.0 1487530.0 1569340.0 1450040.0 1449820.0 1600300.0 1311580.0 1659290.0 1441760.0 False True 1254767.9011324937 1590328.0130944024 1696961.294157458 1768018.2830919444 1634693.9989395626 1349597.3559091804 1522887.3752603312 1409456.7596682918 1250380.212846872 1349745.6424471627 0.9296328594604913 1.1782427466934071 1.2572452473940012 1.3098899729629285 1.211112633026007 0.9998901374204747 1.1282773045292098 1.0442387923645151 0.9263821075057255 1.0 20.364256128485845 2.741112799441378 24.930847138364207 1.0332987735233536 1.1890971345383214 0.35443062078248044 0.10485991336583891 267.3180456599036 2611290.796958119 0.03408441765351477 0.034664539631078996 550.9507764406683 -2.741112799441378 0.1557983610149678 GFGSFR ddPTM_BT-474_Trastuzumab_2h_R1 6 GFGSFR 6 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 126.05 0.041086 9205740000.0 3886890.0 4983130.0 4757590.0 4850370.0 4274200.0 4101860.0 4654540.0 3954360.0 5387970.0 4354580.0 False True 3865963.416114075 5148990.469684298 5427417.318286398 5464426.344680362 4818494.034831792 3818308.0729398327 4429382.118130491 4249454.423033219 4060176.9885990736 4076666.976256494 0.9483147479620955 1.2630392670466533 1.3313369352701618 1.3404151912595557 1.1819690111789558 0.9366249672044819 1.0865204697681454 1.042384489040454 0.9959550319529503 1.0 21.958958676916684 2.901333005574128 5.624339382617286 1.024357167589827 1.2350878193585737 0.4614242327845324 0.1081172348214266 0.20893117034466527 9.668935858738799 0.03376155895233732 0.036073881583928935 796.7700585525741 -2.901333005574128 0.2107306517687466 GFGSSAPEGLEPDS(ph)MASAASALHLLSPRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDS(0.289)MAS(0.289)AAS(0.289)ALHLLS(0.132)PRPR;GFGSSAPEGLEPDS(0.25)MAS(0.25)AAS(0.25)ALHLLS(0.25)PRPR 74.206 0.0038716 886630000.0 164899.0 277213.0 243262.0 255785.0 212193.0 227787.0 251159.0 203819.0 233540.0 195626.0 True False 164011.20210600103 286439.86712620314 277511.1751287916 288167.354773773 239214.52078355278 212040.62084292143 239009.47964944705 219029.0087519112 175987.19627567093 183140.9811961554 0.8955461581279551 1.564040256065944 1.51528714827382 1.5734728125384883 1.3061769092922961 1.157799960762538 1.3050573284493492 1.195958475931269 0.9609383717736976 1.0 17.482595131508674 1.6729269410568681 0.8404104021693752 0.9727350315793261 1.3888348258376306 0.33308102559478925 0.19374944513904388 0.6424160889569811 0.8803447248985455 0.17435900778766342 0.07442956356941852 47.08981031669202 -1.6729269410568681 0.41609979425830457 GFGSSAPEGLEPDSMAS(ph)AASALHLLSPRPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDS(0.053)MAS(0.316)AAS(0.316)ALHLLS(0.316)PRPR;GFGSSAPEGLEPDSMAS(0.367)AAS(0.367)ALHLLS(0.265)PRPR;GFGSSAPEGLEPDS(0.043)MAS(0.319)AAS(0.319)ALHLLS(0.319)PRPR;GFGSSAPEGLEPDS(0.007)MAS(0.331)AAS(0.331)ALHLLS(0.331)PRPR;GFGSSAPEGLEPDS(0.009)MAS(0.33)AAS(0.33)ALHLLS(0.33)PRPR;GFGSSAPEGLEPDS(0.072)MAS(0.309)AAS(0.309)ALHLLS(0.309)PRPR 141.65 3.0952000000000005e-08 4920370000.0 902400.0 1323998.0 1293483.0 1358400.0 1198370.0 1169750.0 1236769.0 1029828.0 1221085.0 1166923.0 True False 897541.5786660647 1368066.4730563061 1475594.163244217 1530373.3007201087 1350975.3162045227 1088887.9357953155 1176941.758553612 1106678.994720624 920164.9634507068 1092448.9750869554 0.821586727741333 1.2522932459590732 1.3507213580632125 1.4008647869327682 1.236648435774302 0.9967403152249227 1.077342544497267 1.013025797962359 0.8422955986365082 1.0 20.05913446680006 2.737884372310947 22.28966205156366 0.996488364911251 1.232790191213942 0.3415727651650181 0.15564031133520598 15.745153667604365 518958.60238144477 0.050518625091621736 0.05031643314223568 546.8703433314412 -2.737884372310947 0.23630182630269103 GFGSSAPEGLEPDSMASAAS(ph)ALHLLSPRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDSMAS(0.117)AAS(0.575)ALHLLS(0.308)PRPR;GFGSSAPEGLEPDS(0.022)MAS(0.104)AAS(0.503)ALHLLS(0.371)PRPR 138.15 7.539100000000002e-07 3390640000.0 222265.0 325540.0 339620.0 318430.0 318020.0 285540.0 294580.0 256110.0 296770.0 267600.0 True False 221068.34993596282 336375.40210691455 387435.5439700415 358743.20535063645 358517.9619477807 265801.2918888602 280330.03999511857 275222.2287002285 223635.01001426275 250521.5388961134 0.8824325082388853 1.3427005262266218 1.5465159030924833 1.431985476903048 1.4310863789498411 1.0609917736417986 1.1189857815433835 1.0985970703874608 0.8926777753309267 1.0 17.934575120662707 2.7261858473011524 23.30127587291361 1.0521515285975882 1.34585356477435 0.4090068195679766 0.17451978640706667 322.7204806244692 607669.914498996 0.05803406397657282 0.05514304241251415 532.3360126696014 -2.7261858473011524 0.2937020361767617 GFGSSAPEGLEPDSMASAASALHLLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 16 GFGSSAPEGLEPDSMASAASALHLLSPR 28 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR 264.56 3.959799999999999e-54 10328049000.0 2206880.0 3074496.0 3034873.0 2974172.0 2798404.0 2861162.0 2815759.0 2510986.0 2652752.0 2495971.0 True False 2194998.4032874163 3176828.740787918 3462156.738810995 3350701.8702512765 3154764.1619599937 2663376.605390889 2679549.979926048 2698368.5258485544 1999016.8146556448 2336675.99387172 0.9393678922726667 1.3595503823035902 1.481658881201765 1.4339608396880825 1.3501076615815935 1.1398142542551855 1.1467357849156519 1.1547893387553203 0.8554959352081176 1.0 21.156026271591678 1.8726572567430926 1.007796187386301 0.9545575101223794 1.322463834319565 0.4337215721106512 0.15334596634919415 0.5048445333384399 0.9439373340227888 0.13163862605097393 0.05736691163482598 74.58598967924762 -1.8726572567430926 0.3679063241971855 GFGSSAPEGLEPDSMASAASALHLLS(ph)PRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDS(0.027)MAS(0.027)AAS(0.027)ALHLLS(0.918)PRPR;GFGSSAPEGLEPDS(0.004)MAS(0.004)AAS(0.004)ALHLLS(0.989)PRPR 94.188 0.0012790999999999998 336285000.0 151853.0 205782.0 205550.0 214977.0 188316.0 198421.0 199674.0 185227.0 189196.0 172937.0 True False 151035.44032045425 212631.32947215397 234489.65332737193 242193.0661579117 212296.9263636198 184704.62330279278 190015.00579124613 199049.57930364815 142571.18089651415 161900.01260118533 0.9328933203514059 1.3133496783347207 1.4483609331458147 1.4959422316693416 1.3112841867812524 1.1408561391393028 1.1736565225557924 1.2294599370660633 0.8806125373672166 1.0 17.30474357236677 1.533925062922117 1.047571231429343 0.9518950676136616 1.3003041682619871 0.35730691655569846 0.1587997123250903 0.5392041996492668 1.1475557738531477 0.1486278930219396 0.05452730918098448 34.1920439394025 -1.533925062922117 0.34840910064832553 GFHCESSAHWPIFK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFHCESSAHWPIFK 14 0 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ; 176.05 1.3222999999999998e-06 2285400000.0 1913880.0 2953900.0 3091700.0 3103600.0 3145700.0 3326100.0 3184600.0 2298100.0 3592700.0 3306400.0 False True 1903575.8827320582 3052218.7758297394 3526984.486461863 3496515.4417807264 3546286.248975326 3096174.535797221 3030548.731646597 2469595.891515349 2707327.2247135537 3095382.721248541 0.6149727042361468 0.9860553768933003 1.139434055197941 1.1295906699286562 1.1456697178773778 1.0002558050554604 0.9790546128086568 0.7978321629059242 0.874634081959835 1.0 21.561686368395787 1.931615552120077 5.9578522733378385 0.8714671021724962 1.0181788301302934 0.08962163196762496 0.1514247410435792 0.4437401193321665 29.31470536378808 0.06879612087155658 0.04211912257274101 85.43101222707861 -1.931615552120077 0.1467117279577972 GFHLDVEDYLSGVLILASELSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFHLDVEDYLSGVLILASELSR 22 0 E9PGT1;Q15631;H7C1D4 E9PGT1 TSN Translin 0 85.80799999999998 0.0030826 119680000.0 7493.2 10184.0 13834.0 13137.0 10773.0 13912.0 14419.0 10817.0 11567.0 12510.0 False True 7452.857443772785 10522.968283641992 15781.706952716419 14800.142853033045 12144.877693426342 12950.296185325422 13721.497884070945 11624.219467613035 8716.467839859079 11711.601089650158 0.6363653770925537 0.8985080863914849 1.347527706238485 1.2637164414788948 1.036995505606751 1.105766503332318 1.1716158857388836 0.9925388833372797 0.7442592838618833 1.0 13.515650699299705 -0.9617810622016923 7.078754845432011 0.9999999981598365 1.0411990638676407 0.0 0.20960402361690286 6.178863934146855e-09 8.72874415754891e-10 0.20732825890257112 0.04886773671855157 0.10919906952405788 0.9617810622016923 0.04119906570780418 GFHQVPFAPIVFIER ddPTM_BT-474_Trastuzumab_2h_R1 2 GFHQVPFAPIVFIER 15 0 P47897;A0A1B0GVU9;P47897-2;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 P47897 QARS Glutamine--tRNA ligase 0 ; 115.82 0.00049767 689050000.0 518740.0 661060.0 654450.0 639190.0 609900.0 569710.0 629180.0 510340.0 641440.0 563530.0 False True 515947.1614774324 683062.9824807914 746590.871418625 720111.3884623728 687567.1498394803 530327.2886530869 598744.1596989912 548424.1622540109 483365.70685564127 527565.0329376938 0.9779783140751986 1.2947465048568945 1.4151636761468203 1.364971792107797 1.3032841581839314 1.0052358582220884 1.134920099546673 1.0395384986001919 0.9162201371915555 1.0 19.008989420225745 2.7399279777839864 24.96882994386464 1.0327205596888513 1.285739747262241 0.5213127194620902 0.12000996928412157 102.95204026613813 1879980.0308371875 0.0387624797566711 0.039117990670720935 549.449747049649 -2.7399279777839864 0.2530191875733896 GFIDQNLS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFIDQNLSPTK 11 0 F8WAY9;C9JTZ9;Q14188 F8WAY9 TFDP2 Transcription factor Dp-2 1 GFIDQNLS(0.969)PT(0.031)K 86.46700000000001 0.010251 0.0 180870.0 154760.0 133310.0 129510.0 95844.0 191790.0 186080.0 148350.0 229280.0 194110.0 True False 179896.2160165462 159911.09304560436 152078.88924870812 145905.95272104067 108049.16528810479 178532.0087250981 177078.59950536944 159420.6303060364 172777.0161945955 181721.73361406813 0.989954324333055 0.8799778092873352 0.8368778253661499 0.8029086550038572 0.594585816122437 0.982447201963502 0.9744492085984632 0.8772788325066624 0.950777943608721 1.0 17.47137144823097 GFIYVHKPPVHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFIYVHKPPVHIR 13 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 ; 138.75 2.9294e-05 3578800000.0 1655390.0 1983210.0 1726960.0 1866250.0 1729470.0 2043660.0 2047350.0 1676290.0 2239450.0 1887690.0 False True 1646477.564171119 2049219.9459742403 1970100.9569945901 2102517.0586490785 1949707.7531281945 1902386.5944581784 1948311.8588634871 1801383.2718281462 1687567.5545925843 1767216.0080672808 0.9316787289471151 1.1595752509142183 1.1148048387979435 1.1897340500828195 1.1032651041116905 1.0764878689270856 1.1024752208951878 1.0193339487673794 0.9549299841609039 1.0 20.753046961630837 1.613226195530656 2.875816785486727 0.9778187484523095 1.103712963167107 0.3629330259614857 0.0649335359982889 0.2236029017836163 4.311166703644223 0.04214592086433652 0.017026393768693544 41.0417807065234 -1.613226195530656 0.12589421471479745 GFKDQIYDIFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFKDQIYDIFQK 12 1 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3KTN0 P60842;J3KTN0 EIF4A1 Eukaryotic initiation factor 4A-I 0 ; 194.12 1.7581e-06 10177700000.0 4919000.0 5307200.0 5165100.0 4609700.0 4527100.0 5695200.0 5823000.0 5449000.0 8479300.0 5804500.0 False True 4892516.650552272 5483846.943729851 5892301.184145993 5193287.547356807 5103599.350776055 5301504.229058753 5541319.243979824 5855632.049461353 6389690.131798828 5434051.8405175265 0.9003441251834505 1.0091635311317866 1.084329218247727 0.9556934125350947 0.939188565100255 0.9756079597050458 1.0197398564847113 1.0775811901168164 1.1758610921146988 1.0 22.373596898170923 1.8203163711167176 2.6499902222331473 1.0971039785966983 0.9817378443969258 0.3821066549449784 0.060290238248505844 0.26899788454157103 3.5239116808300803 0.034801837958264525 0.016886966919960597 66.11749196478782 -1.8203163711167176 -0.11536613419977249 GFKDQIYEIFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFKDQIYEIFQK 12 1 Q14240;Q14240-2;E7EQG2 Q14240 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ; 134.21 0.0001364 1272320000.0 1312480.0 1309120.0 1350310.0 1218410.0 1158120.0 1386020.0 1291440.0 1382510.0 1977970.0 1573440.0 False True 1305413.7535102367 1352693.2678202486 1540421.9108950763 1372660.581073609 1305599.7172849632 1290207.6997401356 1228968.113420111 1485679.916443532 1490525.7969400913 1473021.7121102437 0.8862148757061479 0.9183118325407348 1.0457564190878594 0.931867174657692 0.8863411221648372 0.8758918413305601 0.834317718005322 1.008593358963565 1.011883113932361 1.0 20.4903472649545 1.6144166719156035 11.19580337839859 1.0082441598610177 0.9153302183027588 0.41201666938938053 0.05214460120226269 0.09433814970556292 43.5787794797883 0.028399313948772046 0.014569754267017163 41.15443767053636 -1.6144166719156035 -0.09291394155825883 GFKFDETEQALANER ddPTM_BT-474_Trastuzumab_2h_R1 1 GFKFDETEQALANER 15 1 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 124.46 0.00062768 0.0 129050.0 180490.0 151910.0 183120.0 148870.0 207620.0 191090.0 175830.0 276860.0 193710.0 False True 128355.20913880275 186497.5005414912 173297.6075746097 206302.97322428357 167827.71207837906 193267.71808490966 181846.24666531073 188951.32744664876 208631.5627339312 181347.2619565251 0.7077868601598943 1.028399869561862 0.9556119331768838 1.1376128373735315 0.9254493851614528 1.06573276044963 1.0027515425565414 1.0419309638760723 1.150453337332146 1.0 17.46839543760239 4.740281300428528 6.0737760487703785 1.0333531347007303 0.6991333963175341 0.6784814505383301 0.06741615444847879 0.07117928124868893 13.040999521499302 0.014902661141726645 0.09761832886781392 54989.6936770399 -4.740281300428528 -0.3342197383831962 GFLGCFPDIIGTHK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFLGCFPDIIGTHK 14 0 Q9Y5X1 Q9Y5X1 SNX9 Sorting nexin-9 0 208.95 7.3213e-09 109520000.0 191160.0 217700.0 179860.0 205910.0 196970.0 217950.0 214520.0 203830.0 281360.0 238110.0 False True 190130.81579987262 224946.01289757085 205182.72462885483 231978.18488757225 222052.96196734277 202883.6294991143 204142.8480540191 219040.82962776793 212022.59803084176 222913.61594377295 0.8529349586605361 1.0091174195223254 0.9204584644152446 1.0406640433578795 0.9961390695100147 0.9101446254870723 0.9157935336956333 0.98262651521035 0.9511424285734151 1.0 17.76612521599909 4.75235482987289 24.455639335673684 0.9669388547646008 0.8529348549434637 0.40821471503630957 0.042020962880895914 1823.4092316032434 3232630.766691995 0.009982206896746943 0.1985058276052254 56539.8731603411 -4.75235482987289 -0.11400399982113718 GFLS(ph)SGGSPLRPANASLEEMASLEEEACSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFLSSGGSPLRPANASLEEMASLEEEACSLK 31 1 Q93075;H7C1W4;H7C1D0 Q93075 TATDN2 Putative deoxyribonuclease TATDN2 1 GFLS(0.331)S(0.331)GGS(0.331)PLRPANAS(0.007)LEEMAS(0.001)LEEEACSLK 44.369 0.072005 29381000.0 19530.0 16852.0 11415.0 14137.0 14543.0 17911.0 19541.0 19899.0 25183.0 20796.0 True False 19424.852649986988 17412.908632750867 13022.132779041338 15926.742750500734 16394.964846885654 16672.854727958857 18595.727176130822 21383.964425074588 18976.987084911485 19468.781475648655 0.9977436273699711 0.8944015656311489 0.6688725124029608 0.8180657207756805 0.8421156130080509 0.8563892274826284 0.9551561919471006 1.098371998875298 0.9747393337712326 1.0 14.248874970127849 2.117842465307421 3.1079912835349104 1.0343696843334613 0.8376024075612247 0.4898853804167752 0.08200509107171632 0.20361614827811092 3.8967551298289047 0.03722046439168614 0.024941422345395665 131.17240018368028 -2.117842465307421 -0.1967672767722366 GFLSSGGS(ph)PLRPANASLEEMASLEEEACSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFLSSGGSPLRPANASLEEMASLEEEACSLK 31 1 Q93075;H7C1W4;H7C1D0 Q93075 TATDN2 Putative deoxyribonuclease TATDN2 1 GFLS(0.003)S(0.014)GGS(0.981)PLRPANAS(0.002)LEEMASLEEEACSLK;GFLS(0.021)S(0.149)GGS(0.829)PLRPANAS(0.001)LEEMASLEEEACSLK;GFLS(0.002)S(0.016)GGS(0.839)PLRPANAS(0.142)LEEMASLEEEACSLK 186.9 1.1573e-18 331595000.0 140484.0 133672.0 129441.0 116695.0 117724.0 161947.0 168174.0 143367.0 189297.0 160577.0 True False 139727.64975323982 138121.19171356963 147665.16767865894 131468.5750349921 132715.45359518428 150751.98507223223 160038.78113293185 154065.77354287478 142647.29079984457 150328.83838311382 0.929480007004 0.9187937138286605 0.982281039798455 0.8745399515423897 0.8828342919603906 1.0028148071499097 1.0645913508961746 1.024858405080184 0.9489017033199393 1.0 17.197762270127527 2.6407381040580655 6.019848648688346 1.0168557214854996 0.9190919842894464 0.5794771614499107 0.038365218865030824 0.16639809271510192 8.494098823094259 0.012961453650292637 0.012199047360714107 437.25834237528295 -2.6407381040580655 -0.09776373719605325 GFNGCDS(ph)PEPDGEDSLEQSPLLEDKYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFNGCDSPEPDGEDSLEQSPLLEDKYR 27 1 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 GFNGCDS(0.999)PEPDGEDS(0.001)LEQSPLLEDKYR 67.809 0.014168 62974000.0 58647.0 66029.0 60676.0 63796.0 59261.0 76375.0 69767.0 65538.0 80520.0 70694.0 True False 58331.251068294216 68226.73534962669 69218.65339475352 71872.56705884889 66807.53708253399 71095.37601741149 66392.10367417839 70428.77835522071 60676.92491272171 66182.24839582153 0.8813730642607936 1.0308917723915563 1.0458794476242619 1.085979530779837 1.0094479819267055 1.0742363358858045 1.0031708695827581 1.0641641839364782 0.9168157078893167 1.0 16.014156684412374 4.738504419160087 9.175354717010825 1.031578737254793 0.8807743136192152 0.46114006014940945 0.046378867783154594 0.06366410308762033 117.73220448457667 0.010244009103454441 0.05968232077593602 54765.167355884165 -4.738504419160087 -0.1508044236355779 GFPTDATLDDIKEWLEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFPTDATLDDIKEWLEDK 18 1 P05455;E7ERC4;E9PGX9 P05455 SSB Lupus La protein 0 ; 224.19 4.3229e-19 1887920000.0 2460830.0 1750570.0 1455600.0 1308820.0 1236030.0 2003490.0 1897620.0 1916030.0 3086350.0 1863150.0 False True 2447581.164703915 1808836.664208088 1660535.8276979916 1474516.4778036615 1393431.093976215 1864993.4520081687 1805824.8709876325 2059013.8880031973 2325760.3974711727 1744242.1718770317 1.40323471371524 1.0370329839356793 0.9520099069219493 0.8453622447488984 0.798874787253138 1.0692285062693978 1.035306278052164 1.1804633101993116 1.333393054571288 1.0 20.734168928195214 1.8005144478634971 2.949842603619077 1.1951626803959472 1.0004661721282218 0.13313410675620108 0.17104693495583698 0.4314449919191431 7.056938426578209 0.09916375280970523 0.04878634796792204 63.17051941495159 -1.8005144478634971 -0.19469650826772544 GFPTDATLDDIKEWLEDKGQVLNIQMR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFPTDATLDDIKEWLEDKGQVLNIQMR 27 2 P05455;E7ERC4;E9PGX9 P05455 SSB Lupus La protein 0 153.17 3.4625e-08 1183100000.0 813320.0 640600.0 600840.0 574430.0 536470.0 761630.0 864850.0 794790.0 1153900.0 804450.0 False True 808941.1754883464 661921.9837491219 685433.049405099 647152.7791023649 604786.2745931895 708980.3107841717 823013.901452163 854101.2656618435 869536.8064678297 753109.3122757045 1.0741351385550288 0.8789188673672913 0.9101375301467126 0.8593078966808073 0.80305244502379 0.941404254638432 1.0928213050044815 1.1340999928429607 1.154595743664769 1.0 19.522499758766003 2.2712354370160246 3.8828790883701214 1.111720492442994 0.8991481640400679 0.5880336101913387 0.07552278569129664 0.13819816039277472 4.462551829165986 0.02814614329888698 0.021998935413417724 186.7391755255111 -2.2712354370160246 -0.21257232840292606 GFPTIYFSPANKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFPTIYFSPANKK 13 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 164.68 5.871e-05 2468500000.0 2116050.0 2685400.0 2388500.0 2151380.0 1873890.0 2932300.0 2926400.0 2633300.0 3852100.0 2569500.0 False True 2104657.421915257 2774781.9156414177 2724780.03878583 2423744.4874140397 2112518.784083792 2729597.002891731 2784838.852066387 2829810.21762646 2902801.5704954704 2405512.3101403746 0.8749310544132858 1.1535097550506794 1.1327233817509854 1.0075793323512865 0.8781991159132814 1.134725850865608 1.1576905428115962 1.1763856728969826 1.2067290440621674 1.0 21.197912751713766 2.509954050619626 24.639835527785976 1.1521651390421495 1.0223782463995732 0.2750868381781034 0.09943210700073167 701.3633945057704 526347.3692560393 0.03223248919798461 0.03036511658388491 323.55942176871235 -2.509954050619626 -0.12978689264257626 GFPTWLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFPTWLK 7 0 P15311;E7EQR4 P15311 EZR Ezrin 0 91.906 0.037363 92064000.0 166460.0 189510.0 177690.0 141490.0 145220.0 170820.0 210700.0 132200.0 230840.0 179760.0 False True 165563.7978554446 195817.72578878605 202707.20749083284 159402.61949270347 163712.90621362405 159011.6154670277 200507.63604783593 142065.43529799784 173952.57509752482 168287.562899721 0.9838148167497117 1.1635900028183883 1.2045287482808327 0.9472038025037425 0.972816430357228 0.9448803745632668 1.1914584333680927 0.8441826172422001 1.0336626908144095 1.0 17.36056903431379 3.726808778816075 24.973937513469604 0.9853059227073016 1.1219390734980659 0.2587460226463766 0.09790050862740066 876.8055377455566 1863307.7713143432 0.025373662419546392 0.03967212675062748 5331.00118198133 -3.726808778816075 0.13663315079076432 GFQFVSS(ph)SLPDICYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFQFVSSSLPDICYR 15 0 P62633-2;P62633;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 1 GFQFVS(0.071)S(0.767)S(0.162)LPDICYR 178.03 7.6442e-07 76269000.0 175110.0 123600.0 109570.0 131080.0 100060.0 113650.0 105570.0 117230.0 181150.0 147240.0 True False 174167.22721655006 127713.9512822221 124996.50360048709 147674.71456006484 112802.0478979151 105793.64300332345 100463.17578343635 125978.29788187821 136508.00978563764 137843.01714149388 1.263518681093362 0.9265173813710531 0.9068033056196091 1.0713253208066307 0.8183370491820083 0.7674936692275662 0.7288231052017118 0.9139258592443845 0.9903150164328899 1.0 17.072666659517946 7.678835218531751 1.0155082504099968 0.8775928973087241 199.99999896549028 0.5207168208629076 0.10248541353164897 711.8844443841047 1.86025996367407 0.03140358206713991 328664.0180072108 47734812.226852156 -7.678835218531751 199.12240606818156 GFQFVSSS(ph)LPDICYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFQFVSSSLPDICYR 15 0 P62633-2;P62633;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 1 GFQFVS(0.038)S(0.401)S(0.561)LPDICYR 215.15 2.4953e-12 56554000.0 165990.0 136110.0 105850.0 143810.0 94896.0 111180.0 98296.0 102390.0 169860.0 141360.0 True False 165096.32828322268 140640.33906976756 120752.75993530685 162016.3312548284 106980.44310734105 103494.38828956874 93541.04695281487 110030.86172588506 128000.27900738857 132338.28377561507 1.2475326381226932 1.0627335874192607 0.9124552358563759 1.2242589720260666 0.8083862058293784 0.7820442077445079 0.7068328550445577 0.8314363658549997 0.96722033379561 1.0 17.0138709496855 3.2231473647044813 24.999671007693728 0.8276655955301633 1.094009292290326 0.5339353804577729 0.11862417450201816 177.95127319913888 288629.1620688967 0.03399100365873334 0.0407655687029979 1671.6577446103863 -3.2231473647044813 0.2663436967601627 GFQQILAGEYDHLPEQAFYMVGPIEEAVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFQQILAGEYDHLPEQAFYMVGPIEEAVAK 30 0 P06576 P06576 ATP5B ATP synthase subunit beta, mitochondrial 0 ; 214.4 1.9406e-34 148405000.0 82729.0 85393.0 94817.0 74162.0 93938.0 171757.0 94458.0 72918.0 123981.0 102107.0 False True 82283.59625605597 88235.25438384143 108166.40943586182 83550.90159599886 105900.44748585208 159883.8428624884 89888.70567539857 78359.51143010148 93427.54381028503 95590.44384179922 0.8607931185279787 0.9230551803888417 1.1315609080639444 0.8740507757686989 1.107856007668672 1.6725923265624105 0.9403524250202567 0.819742102670695 0.9773732609182801 1.0 16.544578779019634 4.39616347122792 5.541799218584072 1.055812135215315 0.8751044041343318 0.08913389865809795 0.22374332075368636 0.5237620342652638 26.16509697924209 0.05933646171717421 0.1711343870484262 24897.943164718967 -4.39616347122792 -0.18070773108098315 GFRMS(ph)S(ph)KKT(ph)TFNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFRMSSKKTTFNEK 14 3 P35663 P35663 CYLC1 Cylicin-1 3 GFRMS(0.75)S(0.75)KKT(0.75)T(0.75)FNEK 81.431 0.022903 165710000.0 59725.0 119110.0 124170.0 113970.0 105690.0 124880.0 118500.0 119870.0 82109.0 160480.0 True False 59403.4472360713 123074.50434648467 141652.0566950121 128398.59031439277 119148.99502629075 116247.33953589981 112767.70228603976 128815.30808752653 61874.33715423092 150238.02900615966 0.3953955441843276 0.8191967450627211 0.9428508722595427 0.8546344168900706 0.7930681453588939 0.7737544235962637 0.7505935949240679 0.8574081338769772 0.4118420453432207 1.0 17.196890515746066 4.740120862133959 24.574975127571417 0.8012871747414073 0.3953953751546006 0.4005323897797537 0.14862915866875012 103.6265018549915 1631999.0982637703 0.03340217600993595 0.21135110649263078 54969.38298088114 -4.740120862133959 -0.4058917995868067 GFRMS(ph)SKKT(ph)T(ph)FNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFRMSSKKTTFNEK 14 3 P35663 P35663 CYLC1 Cylicin-1 3 GFRMS(0.704)S(0.704)KKT(0.796)T(0.796)FNEK 70.41199999999998 0.038417 442790000.0 354140.0 406370.0 422350.0 348700.0 369990.0 441650.0 414730.0 437780.0 359970.0 497610.0 True False 352233.34958865313 419895.7797941476 481813.20886799024 392845.38424698304 417106.0333974581 411119.7750322722 394667.9254775463 470449.3666017966 271260.2168508752 465852.1037746453 0.7561055251969948 0.9013499700696233 1.034262172401965 0.8432834821693129 0.8953614892318529 0.8825113629435283 0.8471957565065883 1.0098685028787058 0.5822882727220581 1.0 18.829512482928067 GFS(ph)LEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFSLEELR 8 0 P26373;P26373-2;J3QSB4 P26373 RPL13 60S ribosomal protein L13 1 GFS(1)LEELR;GFS(1)LEELR 125.97 0.0012999 92733000.0 195663.0 230940.0 182946.0 225120.0 186159.0 216250.0 220060.0 187802.0 214590.0 281020.0 True False 194609.57214820271 238626.698293822 208703.206604862 253620.16891792644 209865.2451991602 201301.1464977444 209414.85708916376 201816.73887923293 161707.16985868054 263085.0630066738 0.7397210997998238 0.9070324843481085 0.7932917369754577 0.9640234455708826 0.7977087060766975 0.7651561217393702 0.7959967574588278 0.7671159151825861 0.6146573583866995 1.0 18.005169814396574 3.0161105721461334 24.98006936356429 0.7751713898348566 0.8546414215441652 0.06878861696055871 0.10420713278511273 504.05757333350766 781555.232445839 0.028058997023588182 0.033528176914487916 1037.7926060249154 -3.0161105721461334 0.07947003170930866 GFS(ph)VVADTPELQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GFSVVADTPELQR 13 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 GFS(1)VVADTPELQR;GFS(1)VVADTPELQR;GFS(1)VVADTPELQR;GFS(1)VVADTPELQR 274.92 3.6541e-32 471318000.0 975530.0 963890.0 893010.0 942910.0 663933.0 992370.0 871820.0 839160.0 1058380.0 851420.0 True False 970277.854871573 995972.4959661907 1018738.0458179326 1062282.309321259 748480.932110799 923769.797687707 829646.735924179 901782.3803681384 797556.4305654054 797081.6466626641 1.2172879138969912 1.2495238099337393 1.278084936572472 1.332714551600799 0.9390266796941649 1.1589399926036172 1.0408553996919425 1.1313550928488323 1.000595652785043 1.0 19.604367984351843 3.2487079664592122 24.9999980097951 1.0618604157384899 1.2686030452560544 0.7276157708218471 0.06675395708667804 110.54369725125002 272344.61608719314 0.017763929260039883 0.023783983959538155 1772.9968599945585 -3.2487079664592122 0.2067426295175645 GFSDEDNTWEPEENLDCPDLIAEFLQSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFSDEDNTWEPEENLDCPDLIAEFLQSQK 29 0 P83916;J3KS05;K7ELA4;B5MD17;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 0 ; 238.37 2.4864999999999998e-45 55470000.0 140382.0 134675.0 115385.0 125607.0 130504.0 147624.0 143749.0 154437.0 187969.0 160203.0 False True 139626.19890990635 139157.5759622434 131630.2050556009 141508.83332122423 147122.9108421899 137419.100349517 136795.31169549294 165961.87315519605 141646.5586055564 149978.70738331138 0.9309734784755387 0.9278488819522118 0.8776592847889008 0.9435261564133894 0.9809586534585693 0.9162573991140296 0.9120982176881637 1.1065695661120438 0.9444444553288495 1.0 17.19439816893806 1.765334752042191 24.999999999999915 1.02689207568448 0.927469802997525 0.45698494663298117 0.04454624099949784 13.713664817848562 12813.01426723467 0.019812018960707 0.010988195074600087 58.255207302230154 -1.765334752042191 -0.09942227268695492 GFSDKLDFLEGDQKPLAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFSDKLDFLEGDQKPLAQR 19 2 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 ; 117.37 5.6303e-05 1432360000.0 1917190.0 1739100.0 1624540.0 1432530.0 1634810.0 1926010.0 2071900.0 1886520.0 2793000.0 2035700.0 False True 1906868.0620598358 1796984.8921918508 1853261.1112451889 1613888.1511193905 1842993.3632219739 1792869.4620398676 1971674.281573381 2027301.7019544544 2104702.57428256 1905779.8831495438 1.0005709887694343 0.9429131391722452 0.9724423726114891 0.8468386960052464 0.9670546842881943 0.9407536924342609 1.0345760803786732 1.0637648764578627 1.1043786288709645 1.0 20.861950067466584 2.160368291606882 3.3830006006462368 1.060904390449921 0.9420519395874808 0.5762581203765463 0.04444807507490778 0.16137331266189658 3.6870836479937132 0.017951888480233 0.01267311350043056 144.666605646095 -2.160368291606882 -0.11885245086244012 GFSEEHNTWEPEK ddPTM_BT-474_Trastuzumab_2h_R1 6 GFSEEHNTWEPEK 13 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 0 ;;;;; 177.38 1.5498e-05 7118900000.0 7433910.0 8324080.0 7402210.0 7880950.0 8240320.0 9554330.0 8910830.0 9729660.0 12090100.0 9759610.0 False True 7393886.654545037 8601141.970787387 8444376.82683729 8878677.461948 9289675.907796798 8893861.655573633 8479779.110223712 10455736.635412395 9110656.854039952 9136743.334177503 0.8092474948800388 0.9413794014124693 0.9242217405024062 0.9717551579604775 1.0167381930328747 0.9734170404354764 0.9280964562617944 1.144361426494381 0.9971448820237764 1.0 23.123248597532246 6.613015481269932 0.3797395995278176 1.0376092997474686 7.767411875604852e-14 0.5462459455381686 0.054202169689923516 17.683099517683686 0.6465560088905014 0.043192034399811195 11.224460773582685 4102187.257688415 -6.613015481269932 -1.037609299747391 GFSLLATEDKEALKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFSLLATEDKEALKK 15 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 226.93 4.4938999999999997e-13 4346100000.0 4661370.0 3646930.0 3309930.0 3080260.0 3065750.0 5309790.0 4711410.0 4515930.0 8458900.0 5028170.0 False True 4636273.701846898 3768315.8604342616 3775939.373572697 3470220.6001738263 3456155.0903761066 4942736.715201204 4483501.098965999 4852931.628027891 6374317.438452832 4707267.885767081 0.9849181763938183 0.8005314232971871 0.8021509430108379 0.7372048254713531 0.7342167843954993 1.0500223983738184 0.952463553757443 1.0309444343928758 1.3541437609119829 1.0 22.166458526976466 2.1255309466692753 1.1878467734066045 1.1432727158615263 0.8138508771965601 0.5374961013038473 0.12153655741834477 0.367003894953402 0.9744734781669916 0.08492418330671979 0.043624020991496495 133.51527256036147 -2.1255309466692753 -0.3294218386649662 GFSQYGVSGS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 4 GFSQYGVSGSPTK 13 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 1 GFSQYGVSGS(1)PTK;GFSQYGVSGS(1)PTK;GFSQYGVS(0.001)GS(0.995)PT(0.004)K;GFSQYGVS(0.039)GS(0.959)PT(0.002)K 263.62 3.6557e-24 2670700000.0 4886380.0 4313920.0 3856650.0 3776780.0 3745330.0 4888820.0 5032080.0 4479740.0 6511000.0 4841570.0 True False 4860072.273007854 4457506.219380291 4399632.797397267 4254919.960758018 4222275.575189871 4550867.380444411 4788659.065987637 4814040.946458795 4906451.292930101 4532576.857523385 1.0722536927180564 0.9834375366369158 0.9706692099648676 0.9387419330122336 0.9315397637839363 1.0040353475508454 1.0564981502827016 1.0620980289541526 1.0824860663501252 1.0 22.11190005284082 2.3581516404452896 3.8920368274796946 1.0562870521177283 0.976105707657466 0.39598852427937326 0.040850123648434024 0.2114899750760511 5.992238109434575 0.015267755342155446 0.012467443369022826 228.11384267272246 -2.3581516404452896 -0.08018134446026237 GFSVVADT(ph)PELQR ddPTM_BT-474_Trastuzumab_2h_R1 8 GFSVVADTPELQR 13 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR 330.04 2.3672999999999997e-61 40198430000.0 25060600.0 22264900.0 19755160.0 20251740.0 19544270.0 23836600.0 19799260.0 18594790.0 27520200.0 19979170.0 True False 24925676.514094383 23005973.737083755 22536514.813071057 22815608.207542293 22033116.936535913 22188831.947320897 18841494.153281827 19982427.65223042 20738215.46178694 18704082.265571985 1.3326329600236142 1.2299974631436543 1.204898187095408 1.2198197101355923 1.1779843899153275 1.1863095784262658 1.0073466254991175 1.0683457957737623 1.108753435070114 1.0 24.156849844567553 3.517205728229959 0.30653262944074255 0.9950656020301367 1.400623367378172 0.8102065557575542 0.04374635045071622 1.5266029850193734 0.20581523339226734 0.05571751895898495 0.22053753797887032 3290.074470177559 -3.517205728229959 0.40555776534803534 GFSVVADTPELQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GFSVVADTPELQR 13 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;; 227.36 2.1496e-11 8938900000.0 9071800.0 11443100.0 10299800.0 10880100.0 10390500.0 10713900.0 10871500.0 9481100.0 11083900.0 10601200.0 False True 9022958.436771743 11823976.665999964 11749922.312533516 12257519.544438215 11713668.585681446 9973273.310807792 10345604.011836965 10188627.826050295 8352421.3616507305 9924622.339856058 0.9091487945628576 1.1913779951622272 1.1839163154196084 1.23506155949265 1.180263407972795 1.0049020475828443 1.0424179034289593 1.0266010611944418 0.8415858131052945 1.0 23.242580773969372 2.1841932579297856 1.2160130309432196 0.9519885085885189 1.145908184985779 0.3796589323970516 0.09844371775852295 0.4981407569248048 1.405235024423706 0.06667589682375759 0.03612604666042161 152.82459654443275 -2.1841932579297856 0.19391967639726015 GFTDADNTWEPEENLDCPELIEAFLNSQK ddPTM_BT-474_Trastuzumab_2h_R1 3 GFTDADNTWEPEENLDCPELIEAFLNSQK 29 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 0 ;; 289.26 1.2801e-80 295610000.0 376091.0 392605.0 333897.0 341921.0 350526.0 397137.0 388708.0 387279.0 507714.0 419981.0 False True 374066.16784363834 405672.62009026605 380906.7953152486 385208.1635420503 395163.40836962394 369683.85394994135 369904.70903123944 416179.72554291494 382594.68771904643 393177.4530161764 0.9513927234994531 1.0317799685059141 0.9687910443317741 0.9797310618577147 1.0050510407914104 0.9402468303153984 0.9408085488971835 1.058503539178764 0.9730839975284784 1.0 18.584821066322803 1.7457069643866951 24.999998980242996 1.0152915586997437 0.9761152731907683 0.19702874513569146 0.033210625946684724 2.2766652740247886 7987.791705760736 0.015054382656030992 0.00834837853713205 55.68099205419309 -1.7457069643866951 -0.03917628550897545 GFTECEMTKSS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFTECEMTKSSPLK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 GFTECEMT(0.003)KS(0.081)S(0.916)PLK 143.14 5.5764e-06 273070000.0 329600.0 240990.0 184620.0 212810.0 215390.0 411850.0 424340.0 313380.0 726350.0 484390.0 True False 327825.4702220027 249011.20646846844 210612.89125419286 239751.72418009926 242818.6397834491 383379.7788906182 403813.0530637813 336766.00691139634 547350.7750913501 453475.81549285713 0.7229172075377555 0.5491168392251135 0.46444128674268914 0.5286979282886932 0.5354610576520895 0.8454249726061895 0.8904842094498464 0.7426327830633801 1.2070120531046746 1.0 18.790666086273532 2.1680989715186536 0.8513262684193297 1.0287667738419854 0.5442837783966811 0.6976814709403567 0.1251245947967931 0.36487623514468726 0.4979047180372383 0.10301943248212243 0.05736373077021252 147.26480664690618 -2.1680989715186536 -0.4844829954453044 GFTIPEAFR ddPTM_BT-474_Trastuzumab_2h_R1 6 GFTIPEAFR 9 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 ;;;;; 145.63 0.00022497 4759902000.0 4443420.0 5810560.0 5970290.0 5072620.0 4229430.0 4743864.0 5026541.0 4056897.0 6503650.0 4734299.0 False True 4419497.120430374 6003960.97704231 6810854.937309045 5714813.171892559 4768022.840704365 4415931.847534686 4783388.008578674 4359643.254645553 4900912.601945138 4432151.984582706 0.99714475852896 1.3546378819876124 1.5366925504812754 1.2893991884239542 1.0757805366986486 0.9963403472840187 1.079247287822653 0.9836402880159851 1.1057636604053789 1.0 22.07957592355519 3.2211536708531145 4.214702025581801 1.0328870753315345 1.3192489946829193 0.4843796367099442 0.12841179795139102 0.16717842575913236 6.767260650666045 0.037886110946360865 0.04833245160858252 1664.001336805349 -3.2211536708531145 0.2863619193513849 GFVEFAAKPPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFVEFAAKPPAR 12 1 Q8WXF1;Q8WXF1-2;X6RDA4 Q8WXF1 PSPC1 Paraspeckle component 1 0 ; 168.02 4.347e-05 4020500000.0 3953100.0 4549600.0 4410800.0 4433500.0 4231000.0 4922700.0 5011600.0 4578300.0 6154100.0 4850900.0 False True 3931816.948830703 4701030.68570872 5031802.300639126 4994780.645423007 4769792.770898254 4582405.335789347 4769169.761828828 4919955.9941363325 4637504.5157151185 4541311.408935571 0.8657888866846666 1.0351702982664617 1.1080064429711771 1.0998542481793214 1.0503117582980805 1.0090489119008486 1.0501745712581874 1.0833778067841227 1.0211817904824312 1.0 22.114677538639377 4.727434382717405 4.1861878212766594 1.057694894752836 0.8522239083008836 0.7171815406436927 0.034868691483322244 0.10476810106901922 4.134448695634247 0.008504747324171353 0.06347436836646046 53386.86056054084 -4.727434382717405 -0.2054709864519524 GFVEPDHYVVVGAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GFVEPDHYVVVGAQR 15 0 P02786;G3V0E5 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form 0 131.53 5.2995e-05 809380000.0 351080.0 444630.0 469750.0 478480.0 489210.0 523510.0 465970.0 413090.0 502300.0 470600.0 False True 349189.8242886551 459429.2407654891 535886.716859805 539055.51894034 551507.9937251555 487320.985909985 443429.2509217377 443916.8734285172 378514.8954751632 440565.90509906964 0.7925938440700105 1.0428161495206436 1.2163599376563212 1.2235525098546223 1.251817236290989 1.1061250547756336 1.0064992451515833 1.0076060546008299 0.8591561241899708 1.0 18.748998325245545 1.9512381378688977 1.9093330737083967 0.9462055233272645 1.1190050092043602 0.21709974811921562 0.12840286499489406 0.5320642586812189 3.5958925851626025 0.08409961925581641 0.04125599746415448 89.3795446666444 -1.9512381378688977 0.1727994858770957 GFVFITFKEEEPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GFVFITFKEEEPVKK 15 2 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 91.076 0.003244 1233900000.0 899010.0 792260.0 781620.0 706990.0 798360.0 1012600.0 1141900.0 973360.0 2058500.0 1219500.0 False True 894169.8300494009 818629.8951687168 891665.3020371689 796494.8615106822 900026.4137495443 942601.3454040055 1086661.9345183866 1045997.0658219312 1551210.2574868067 1141670.4659335215 0.7832118432863688 0.7170456971568755 0.7810181034227522 0.697657411028325 0.7883416805510602 0.8256334673887346 0.9518175050887775 0.9161987605299398 1.3587197915454636 1.0 20.122714857704793 1.812493341280379 1.2357253236390815 1.146344525636648 0.7539485103440282 0.6838616547334881 0.10372586162957906 0.24411173751836412 0.6943810160332275 0.07895930198841847 0.032216461465955006 64.937167515898 -1.812493341280379 -0.3923960152926198 GFVLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GFVLHK 6 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ; 105.82 0.032648 3439300000.0 5199600.0 5863600.0 5980400.0 5055500.0 4444500.0 5380100.0 5826000.0 5337200.0 7230000.0 5407900.0 False True 5171605.9313298715 6058766.3813789515 6822388.337431342 5695525.781647906 5010480.730384604 5008186.350393143 5544174.1225187145 5735488.965752456 5448263.377036493 5062763.192063874 1.0214986826633752 1.1967311429608956 1.3475622063709727 1.1249836434332774 0.9896731370408111 0.9892199497388535 1.0950885736092646 1.1328771953511696 1.0761442260576022 1.0 22.271493573890876 3.478823673119804 24.9933085604474 1.059487980802736 1.1972210921170032 0.34999773304051984 0.08588503586469745 74.69767820848602 1096650.6227893375 0.024868962464271026 0.03418131489894805 3011.7829690050385 -3.478823673119804 0.13773311131426724 GFVLQDTVEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFVLQDTVEQLR 12 0 P56192;P56192-2;H0YHV5;H0YIC2 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ; 176.95 5.5605e-05 125294000.0 141414.0 169824.0 158516.0 179442.0 163282.0 168747.0 170224.0 162456.0 182630.0 163824.0 False True 140652.64273657234 175476.48917922424 180833.67495422834 202159.338801397 184074.99485176263 157081.91707771044 161989.61480117147 174579.2916548528 137623.2836166215 153368.61206321727 0.9170888413503833 1.1441486417500752 1.179078773169638 1.3181271974872448 1.2002129534554857 1.0242116360351659 1.0562109979478767 1.138298699494605 0.8973366959850582 1.0 17.226643730066545 2.732844047819656 24.650205493698195 1.0432354035705211 1.162073546900259 0.245413088051899 0.10915969022670953 639.9927904958932 2759681.9073499083 0.03633606325290729 0.03517535452887164 540.5601766242937 -2.732844047819656 0.11883814332973786 GFVPSPTSQPGGHESLVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GFVPSPTSQPGGHESLVDR 19 0 P26640;A0A140T936 P26640 VARS Valine--tRNA ligase 0 ;;; 205.15 4.2504e-16 2695420000.0 505514.0 1009100.0 1030940.0 1173900.0 1207740.0 1035890.0 998030.0 980880.0 1032960.0 1144540.0 False True 502792.3687918851 1042687.283486169 1176087.3909088823 1322515.61963732 1361538.5301641815 964281.3625227677 949751.4760551582 1054078.2464077177 778400.848954857 1071494.4773100072 0.4692440133281397 0.973114939522452 1.0976140482417196 1.2342719889303608 1.2706911318687628 0.8999405810691637 0.8863801878284193 0.9837458509856131 0.7264627727331238 1.0 20.03119298342823 -0.7937781758566653 7.175662711280283 0.9999370659860514 0.9691379558085048 0.0 0.22324605569665956 0.0 0.0 0.21860201543750862 0.05152498916563624 0.1607762238383709 0.7937781758566653 -0.03079911017754655 GFVQVDDGRK ddPTM_BT-474_Trastuzumab_2h_R1 4 GFVQVDDGRK 10 1 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ;;; 124.42 0.00069904 1618170000.0 1905100.0 2148720.0 1811940.0 1746530.0 1817420.0 2203860.0 2209010.0 1973820.0 2846420.0 2293700.0 False True 1894843.1532765063 2220238.8462713324 2067045.402335188 1967640.5189242447 2048857.664307706 2051512.345528412 2102151.7470623157 2121116.471254873 2144957.93107389 2147314.1022646306 0.8824247702178923 1.033960911414773 0.9626190225990745 0.9163263617787002 0.9541490283824388 0.9553853082624555 0.9789679790419645 0.9877998142041127 0.9989027356602113 1.0 21.034101808790517 1.962031134175459 1.6354351576344417 0.9975453899810092 0.9532238531285427 0.2413149804075817 0.03613066241238364 0.6053038325533754 3.014124926708071 0.023217520791119408 0.011004690418086832 91.62861754880474 -1.962031134175459 -0.044321536852466425 GFYDPPRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GFYDPPRR 8 1 P31942;P31942-3;P31942-2 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ; 72.138 0.075248 2107900000.0 2395900.0 3085500.0 2714800.0 2978000.0 2845000.0 2808800.0 2873700.0 2505350.0 3087100.0 2842100.0 False True 2383000.7406095145 3188199.0022758655 3097020.2425353853 3355014.494658778 3207293.886363868 2614634.2672039983 2734688.1523999316 2692311.9389095227 2326325.5700206594 2660714.744755769 0.8956242849055409 1.1982490827172512 1.1639805614786658 1.2609448274270902 1.205425682210165 0.9826811657872777 1.0278020812978779 1.0118754534720533 0.8743235533255919 1.0 21.34338241663062 2.728570462275158 24.360339632073064 0.9867465704300562 1.1553248768289555 0.40799048403796434 0.0990836046030967 494.9996734528718 1207021.3736528438 0.03198747979115648 0.030501008810100785 535.2669913253629 -2.728570462275158 0.16857830639889926 GGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDAR 42 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;;; 404.26 7.828099999999992e-214 469059000.0 229121.0 289661.0 281737.0 295123.0 299431.0 287646.0 306987.0 188991.0 325079.0 304824.0 False True 227887.43799373595 299302.19128122804 321403.1206980967 332485.5415403568 337561.76298341574 267761.709065851 292136.86600577604 203094.46809685274 244967.63628542834 285369.8713470438 0.7985686678065522 1.0488219722300007 1.126268583228368 1.1651038701840208 1.1828920880470257 0.9382970521797687 1.0237130662280138 0.7116885434968209 0.8584215114549303 1.0 18.122473501077156 1.8760293290381533 6.716036425247595 0.8306871910355351 1.0527939084122069 0.30493598041494463 0.12505855288599194 0.25493750295885315 12.797278407382214 0.05554318862091518 0.03406560391373064 75.16736547849848 -1.8760293290381533 0.22210671737667176 GGAAVDPDSGLEHSAHVLEK ddPTM_BT-474_Trastuzumab_2h_R1 6 GGAAVDPDSGLEHSAHVLEK 20 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;;;; 254.62 2.2622e-36 12868610000.0 16009230.0 19642770.0 19064220.0 20008200.0 19708660.0 22892710.0 22854940.0 5086890.0 27607180.0 17160210.0 False True 15923038.084472662 20296567.725144777 21748296.46682924 22541236.068513025 22218441.028620087 21310190.841342803 21749359.237850644 5466499.562504031 20803760.406259242 16065030.706205076 0.9911613849777723 1.2634004936763228 1.3537662556990333 1.4031243687449992 1.3830313452210379 1.32649549391224 1.3538324100090273 0.3402732097108666 1.2949717175594222 1.0 23.93742040254638 1.7820305449571596 24.999999999397538 0.809328389543443 1.3059329845796643 0.3645384115620439 0.24769007562942835 63.02883333390352 36261.086244606326 0.1083740088113231 0.06034680252257635 60.538345130530594 -1.7820305449571596 0.49660459503622134 GGAEGELQALR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGAEGELQALR 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 136.99 0.00020412 228080000.0 297630.0 411880.0 384660.0 400710.0 359900.0 359200.0 354640.0 318570.0 408560.0 364740.0 False True 296027.5931498016 425589.1768132822 438816.78447534353 451439.8449142781 405731.1317055727 334369.34946584905 337484.7083436378 342343.31106568227 307875.86242351733 341461.9809303751 0.8669415913983183 1.2463735366780433 1.2851116931955575 1.3220793825545332 1.188217588968718 0.9792286349267907 0.9883522242332792 1.0025810490904605 0.901640239960694 1.0 18.38136542930168 2.745275807083028 6.283023528882296 0.9775342083662678 1.199533658460312 0.42700892764853415 0.11924982074648525 0.14449897991141994 28.230519416918067 0.03803353431909416 0.03844681009636008 556.2574071111002 -2.745275807083028 0.2219994500940442 GGAEQFMEETER ddPTM_BT-474_Trastuzumab_2h_R1 4 GGAEQFMEETER 12 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;;; 177.04 5.5335e-05 4295660000.0 1839170.0 2073290.0 1983710.0 2030570.0 1990890.0 2039850.0 2004460.0 1783260.0 2101100.0 2058910.0 False True 1829268.1130709986 2142298.204319726 2262999.1252835854 2287639.9538009684 2244418.040570457 1898839.970790401 1907496.6120192003 1916335.9164108005 1583312.0582975617 1927508.6010784635 0.9490323996725627 1.1114337975566415 1.1740539699887258 1.186837740968319 1.1644140209359788 0.9851265876209206 0.9896176914343904 0.9942035617058146 0.8214293090114774 1.0 20.87830586718462 2.642967423744871 4.90848097115767 0.960592305357039 1.1235663838779326 0.5056772435157851 0.07871730082093269 0.19805853091796194 7.7774723686532194 0.026746472007678705 0.025181011798186555 439.508646833807 -2.642967423744871 0.16297407852089363 GGAESHTFK ddPTM_BT-474_Trastuzumab_2h_R1 6 GGAESHTFK 9 0 P50238;K4DIB9;H3BRQ4 P50238 CRIP1 Cysteine-rich protein 1 0 ;;;;; 135.79 0.00021091 15276110000.0 24176720.0 27009500.0 24672830.0 22676460.0 19505220.0 23632860.0 26708820.0 20308300.0 29667400.0 24260820.0 False True 24046555.225806136 27908494.879912466 28146550.003917154 25547297.51093015 21989094.150503423 21999176.013968524 25416812.338999365 21823808.469457876 22356266.792792883 22712473.696867026 1.05873783484549 1.2287738998576003 1.239255150256914 1.1248135210588779 0.9681505609640668 0.9685944519994361 1.119068432537376 0.9608732523251426 0.9843166839143866 1.0 24.43698150789838 3.3867371115501474 4.542057861631609 1.0029231307415876 1.1812975044852172 0.6255403887241299 0.06239817687356822 0.13191471777477948 4.857158401662165 0.01747023742893434 0.024078028046725007 2436.335601884268 -3.3867371115501474 0.17837437374362963 GGAFDGTMNGPFGHGYGEGAGEGIDDVEWVVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGAFDGTMNGPFGHGYGEGAGEGIDDVEWVVGK 33 0 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 0 ; 315.96 2.540399999999999e-104 309820000.0 124269.0 118716.0 110721.0 107921.0 114429.0 135936.0 142225.0 123100.0 165351.0 146048.0 False True 123599.94951158401 122667.39029466244 126309.55439581587 121583.78753461064 129000.85487617941 126539.06427892455 135345.03339773818 132286.34708913427 124602.46163988409 136727.0916020164 0.9039901899716941 0.8971696015572483 0.9238078051384011 0.8892443049144592 0.943491544833511 0.9254864035816177 0.9898918481473951 0.9675211074787711 0.9113224027508423 1.0 17.060939606535204 2.788833236161711 1.509085752700465 0.964483868249317 0.9048054031861686 0.5092713162611999 0.025862585384349823 0.3169970623310533 1.456990939329871 0.010119381798450004 0.01014545756469775 614.9406975642088 -2.788833236161711 -0.059678465063148334 GGAGGS(ph)PGSSSGSGSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGAGGSPGSSSGSGSSR 17 0 Q8TAE6 Q8TAE6 PPP1R14C Protein phosphatase 1 regulatory subunit 14C 1 GGAGGS(0.643)PGS(0.137)S(0.21)S(0.008)GS(0.002)GSSR 83.54 0.004822399999999999 0.0 16291.0 17720.0 18472.0 16525.0 15559.0 13595.0 19055.0 15574.0 17811.0 18784.0 True False 16203.29106610026 18309.79948803381 21072.697038497747 18617.063305653573 17540.346424581858 12655.209649187685 18133.236852831116 16736.21096316959 13421.717705172461 17585.18903820851 0.921416939612892 1.041205724217743 1.1983207569001217 1.0586785996558263 0.997449978301102 0.7196516125980147 1.0311653069769011 0.9517219818795072 0.7632398876128201 1.0 14.102073223356575 2.991607554465132 22.12826775956476 0.902024554639407 1.0596577257583393 0.32821067848097807 0.10952023382514342 106.7630361543365 281505.9458454836 0.032621162769545985 0.037191459279949365 980.8611977656977 -2.991607554465132 0.15763317111893227 GGAGT(ph)GGTGSPQASLEILAPEDSQVLQQATR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGAGTGGTGSPQASLEILAPEDSQVLQQATR 31 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;D6RCL7;D6RJA4;D6RF61;D6RIC7;D6RBK2 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 GGAGT(0.344)GGT(0.344)GS(0.311)PQASLEILAPEDSQVLQQATR 96.563 0.0012935 11664000.0 5827.0 6527.5 5228.1 4946.5 8776.4 10791.0 11309.0 6563.6 7785.7 10136.0 True False 5795.628079440563 6744.763891542925 5964.171036540173 5572.726392823931 9894.0225182017 10045.043569281672 10761.940465424663 7053.409161285469 5867.018558034998 9489.11180213381 0.6107661286209426 0.710789801214718 0.6285278496981155 0.5872758703897657 1.0426710870849722 1.0585862806488222 1.1341357009835875 0.7433160561665396 0.6182895386179016 1.0 13.212057339387332 3.246261779818859 24.999548267375733 0.9276852757591841 0.6393854278563812 0.4963950730411414 0.14719944888367803 169.73384287215103 550987.2176236213 0.04514134551662798 0.05999996957625071 1763.038433412288 -3.246261779818859 -0.28829984790280294 GGAGTGGT(ph)GSPQASLEILAPEDSQVLQQATR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGAGTGGTGSPQASLEILAPEDSQVLQQATR 31 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;D6RCL7;D6RJA4;D6RF61;D6RIC7;D6RBK2 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 GGAGT(0.079)GGT(0.525)GS(0.394)PQAS(0.002)LEILAPEDSQVLQQATR 142.38 8.3277e-08 152000000.0 37022.0 36436.0 35609.0 42655.0 39144.0 45419.0 37832.0 33953.0 47239.0 41790.0 True False 36822.67766553089 37648.7502339729 40622.43768102349 48055.11862648433 44128.756375334706 42279.29143482574 36001.92162772534 36486.74526984056 35597.5814201697 39122.92642178097 0.9412045834339874 0.9623193783635944 1.0383281977190668 1.2283109424997034 1.127951316820892 1.0806781419931697 0.9202256814736113 0.9326179968359227 0.9098905597294838 1.0 15.255726668456294 2.238885350632564 24.99999937904927 0.9342757373913693 1.0678767163021687 0.3627556762689579 0.07917559371460448 9.939477372314824 765277.7137987688 0.03183934362684555 0.02510780408661823 173.33463513775567 -2.238885350632564 0.13360097891079947 GGAGTGGTGS(ph)PQASLEILAPEDSQVLQQATR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGAGTGGTGSPQASLEILAPEDSQVLQQATR 31 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;D6RCL7;D6RJA4;D6RF61;D6RIC7;D6RBK2 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 GGAGT(0.043)GGT(0.182)GS(0.772)PQAS(0.003)LEILAPEDSQVLQQATR;GGAGT(0.012)GGT(0.044)GS(0.944)PQASLEILAPEDSQVLQQATR;GGAGT(0.151)GGT(0.13)GS(0.695)PQAS(0.024)LEILAPEDSQVLQQATR 192.91 3.6729999999999996e-19 257864000.0 127492.0 138478.0 135427.0 165050.0 155472.0 166697.0 141876.0 147433.0 177673.0 166241.0 True False 126805.59723769285 143087.15651828138 154493.9444474142 185945.31307704208 175270.43764525952 155173.62875252982 135012.91586104778 158435.1991096046 133887.86984622473 155631.35705391932 0.8147818000055116 0.9193979878277876 0.9926916231533529 1.1947805159381881 1.1261897406994668 0.9970588941068547 0.8675174361826828 1.0180159198554948 0.8602885201331153 1.0 17.24777324239891 4.49773585312195 2.5755313381214235 1.0109551276380413 0.8149367664097221 0.28724395228396715 0.09542014318159447 0.4493176913609971 5.177509987279108 0.026079174817819913 0.15025052558520072 31458.343706413474 -4.49773585312195 -0.19601836122831917 GGAVERPLT(ph)PAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGAVERPLTPAPR 13 1 H9KVB4;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR 130.4 0.00023045 1806580000.0 884890.0 1003260.0 954990.0 1150710.0 926690.0 919480.0 1007110.0 944820.0 1124110.0 956910.0 True False 880125.8505605212 1036652.9026165219 1089444.2910781149 1296389.7680150454 1044698.4785780426 855918.5118231035 958392.2417661904 1015327.266098746 847088.1528022802 895839.1845481318 0.9824596487197237 1.1571863795391109 1.216115916639256 1.4471233122817178 1.1661674289286605 0.9554376796487591 1.06982621244639 1.1333811733306631 0.9455805990776771 1.0 19.772880246364842 2.9821890461122975 23.872316221677703 1.0436236821670362 1.2122030113566142 0.3431052075424913 0.11791815963116399 526.4384955947178 705595.6383569723 0.037516855183809164 0.0406052700316923 959.8183444911738 -2.9821890461122975 0.16857932918957808 GGCVS(ph)PERGPTFNPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGCVSPERGPTFNPK 15 1 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 GGCVS(1)PERGPTFNPK;GGCVS(1)PERGPTFNPK 139.88 3.0501e-06 433140000.0 272860.0 302580.0 297530.0 259700.0 253440.0 355730.0 366360.0 304830.0 403290.0 292280.0 True False 271390.9520775963 312651.1923865273 339419.63782287977 292577.99337235896 285714.08174342965 331139.2223983476 348637.7671688899 327577.9624953758 303904.5833091351 273626.4401665023 0.9918301459188457 1.14262054572021 1.2404489771395708 1.069260679612411 1.0441757074702722 1.2101872253165618 1.2741377147498723 1.1971721822497996 1.110655034375364 1.0 18.06184811713898 2.7213313144734377 24.70851460763459 1.1822551943658237 1.1065187932894471 0.06560997322259243 0.09244328004363837 1475.0782643271764 2115403.128897424 0.029888364044482748 0.028251129786388145 526.4187074268128 -2.7213313144734377 -0.07573640107637658 GGCWPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGCWPR 6 0 Q9Y4W6 Q9Y4W6 AFG3L2 AFG3-like protein 2 0 ;;; 118.11 0.051516 1578400000.0 1745410.0 1471970.0 1488430.0 1419340.0 1300310.0 1703140.0 1598160.0 1620080.0 2463560.0 1769900.0 False True 1736012.9064932817 1520963.631625343 1697988.0063345178 1599028.2984717926 1465896.7709588062 1585405.9405603188 1520850.8952359257 1740978.596199549 1856448.6480127294 1656943.4667123742 1.0477200588730968 0.9179333285541506 1.0247712371886666 0.9650469859689939 0.8846993276526003 0.9568256083630924 0.9178652897877821 1.0507169563569438 1.120405545094549 1.0 20.66009294938199 1.6254006947931845 5.696782655270389 1.0678549463888896 0.9577277234742044 0.4106009781850428 0.05347764434801849 0.12113667722563501 8.371564284879428 0.027733771277029938 0.013280163552794854 42.20857544407573 -1.6254006947931845 -0.11012722291468513 GGDAKS(ph)PVLQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGDAKSPVLQEK 12 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK 177.88 5.9739e-05 3660520000.0 5733580.0 5278460.0 5047740.0 4500410.0 4472860.0 6421710.0 6380180.0 5941860.0 9482150.0 6409400.0 True False 5702711.042340625 5454150.350203543 5758417.916257394 5070161.4445625665 5042452.208281722 5977792.302779336 6071546.318745518 6385271.765353715 7145401.186800352 6000346.604636591 0.9503969383925294 0.9089725493505674 0.9596808810690612 0.8449780952061584 0.8403601559258786 0.9962411668286252 1.0118659335535567 1.0641504876434447 1.1908314065189092 1.0 22.516614408436624 2.1902155839323254 1.6661870787947388 1.0902791502464961 0.9036081478801934 0.6365728723739993 0.05942543855269685 0.233554198289386 1.2716340815348746 0.033101015870512555 0.019436574471610648 154.9585642878523 -2.1902155839323254 -0.18667100236630274 GGDEYDNHCGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GGDEYDNHCGK 11 0 P20645;F5GX30;F5H4U1;H0YGE9 P20645 M6PR Cation-dependent mannose-6-phosphate receptor 0 ;; 157.68 3.0477e-05 2047240000.0 2511790.0 2723740.0 2660550.0 2454140.0 2623150.0 2900730.0 2768710.0 2624720.0 3504480.0 2870180.0 False True 2498266.801726104 2814398.0393644 3035132.314084837 2764833.8723713574 2957192.6038718377 2700209.362683944 2634776.919800682 2820589.934458104 2640847.861626121 2687002.655115275 0.9297597071480846 1.0474117076165148 1.1295605935881097 1.0289658133042459 1.1005544033394232 1.0049150333154777 0.9805635713775085 1.0497160950282343 0.9828229445917038 1.0 21.35756631625015 2.615282254125904 17.723108449929654 1.0082742175363417 1.0510334271878765 0.14487042666382266 0.05200011562019066 4.541590565922447 634.0198854294249 0.01689885337933065 0.0159322557841008 412.36543415464274 -2.615282254125904 0.04275920965153479 GGDGPSHESEDFPRPLVTLPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGDGPSHESEDFPRPLVTLPGR 22 1 Q15637-6;Q15637-2 Q15637-6 SF1 Splicing factor 1 0 ; 189.47 1.2755999999999994e-17 273460000.0 92671.0 171618.0 168261.0 178740.0 186991.0 182002.0 165858.0 161092.0 158934.0 173398.0 False True 92172.06963271611 177330.2013847284 191950.68624917007 201368.465673375 210803.19546750988 169420.63012662416 157834.814900911 173113.5030486013 119766.84530648934 162331.5911865036 0.5678011837315089 1.092394894232219 1.1824604492950295 1.2404761402358322 1.298596249360465 1.043670113058745 0.9722988221040338 1.0664190610299034 0.7377913592240256 1.0 17.30858426306591 2.3414677638959804 4.067743928546749 0.962414181345212 1.0985796811567672 0.07821979071801743 0.20307188959258196 0.6080024798356406 18.532044015743462 0.0760167192625814 0.061914942480485964 219.51680037343988 -2.3414677638959804 0.13616549981155524 GGDISVCEWYQR ddPTM_BT-474_Trastuzumab_2h_R1 6 GGDISVCEWYQR 12 0 P14854 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 ;;;;; 300.81 3.886e-36 7445770000.0 1298750.0 1639670.0 1798360.0 1534630.0 1752530.0 2062390.0 1677870.0 1512750.0 1772180.0 1568380.0 False True 1291757.6743046911 1694245.424748554 2051553.4563746636 1728914.0006508394 1975704.307440865 1919821.8336438555 1596705.0180141549 1625639.0865888533 1335449.9849953693 1468284.6456423267 0.8797733315120171 1.153894396278575 1.3972450522202224 1.1775060140974885 1.3455867112037794 1.3075270107479713 1.0874628586173416 1.107168893588538 0.9095307159676478 1.0 20.485700249391197 1.6263877954161219 1.7926438828722258 0.9629427293732518 1.2161360538006456 0.3105366858369254 0.13950202156950875 0.3917360726429638 2.581003707815623 0.11239876947792538 0.040990730775247446 42.304619712594175 -1.6263877954161219 0.25319332442739384 GGDLMAYDR ddPTM_BT-474_Trastuzumab_2h_R1 8 GGDLMAYDR 9 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;; 185.58 9.9295e-05 11270340000.0 5214070.0 6366250.0 6310670.0 5762250.0 4593090.0 5016500.0 5543150.0 4515050.0 6865520.0 5215800.0 False True 5185998.026457639 6578146.782770606 7199157.482673049 6491750.259183203 5177992.786122681 4669721.162570804 5275006.657610644 4851985.95795935 5173604.589254715 4882923.178528962 1.0620683219554525 1.3471739247702745 1.4743540333235143 1.3294803177999044 1.0604288858958892 0.9563372168344482 1.080296876429623 0.993664200840667 1.059530203547729 1.0 22.21931365001773 3.201141650375443 5.2061783860394755 1.0205958007704572 1.3195446574397924 0.645269237469589 0.10101804032789756 0.11324405091912966 7.3807101115038245 0.029704088608280457 0.03675195233775407 1589.0649567558849 -3.201141650375443 0.29894885666933524 GGDLMAYDRR ddPTM_BT-474_Trastuzumab_2h_R1 10 GGDLMAYDRR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;;;; 145.25 4.9335e-05 10846670000.0 3543661.0 5198870.0 4953622.0 4717270.0 3508264.0 3655879.0 4381860.0 3192331.0 6196870.0 4213160.0 False True 3524582.3229137524 5371911.245166722 5651048.919945719 5314475.898327417 3955020.6252901386 3403156.6897434867 4169892.691469251 3430558.949548361 4669734.422303747 3944272.521732249 0.8935950301339278 1.3619523538417881 1.4327227362737822 1.3473906453079973 1.002724990096062 0.8628097249854545 1.0572019728590951 0.8697570795746449 1.1839279351450314 1.0 21.911327804652785 3.206040166515613 8.971832821768897 0.9791940043710964 1.2786284668204722 0.38641345171657815 0.16067046673070248 0.255015044810839 65.0889204763989 0.04584683710682051 0.05534599619999585 1607.0898807723854 -3.206040166515613 0.29943446244937577 GGDSIGET(ph)PT(ph)PGASK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 GGDSIGET(1)PT(1)PGASK;GGDSIGET(1)PT(1)PGASK 199.84 8.635e-10 437770000.0 1319690.0 1008040.0 868480.0 954770.0 973460.0 1275640.0 952700.0 1154990.0 1892950.0 1157070.0 True False 1312584.9356713425 1041592.0020269522 990754.4350365155 1075643.784105227 1097424.360850533 1187458.0093335642 906614.2613325736 1241181.2187203835 1426457.8367304618 1083224.8019825334 1.2117382590105312 0.9615658726799975 0.9146341860186571 0.9930014362084109 1.013108598364819 1.0962249084033726 0.8369585516074551 1.1458205318496733 1.316862237755024 1.0 20.046901246296144 1.570614934860805 8.19090127782032 1.1809168525184728 1.001352435443673 0.24778392475675182 0.11870467467123469 0.13451121414242356 17.275424355141563 0.06024549210705349 0.028266155865797855 37.20616732500422 -1.570614934860805 -0.17956441707479986 GGDSIGET(ph)PTPGASK ddPTM_BT-474_Trastuzumab_2h_R1 3 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 GGDSIGET(1)PTPGASK;GGDSIGET(1)PTPGASK;GGDSIGET(1)PTPGASK 248.42 2.4505e-17 2058450000.0 2807880.0 2319330.0 2186690.0 1953440.0 2236350.0 2920280.0 2460050.0 2518680.0 3638010.0 2591710.0 True False 2792762.6860647956 2396527.4969854066 2494556.944949795 2200745.303709286 2521135.916615054 2718407.9171996964 2341047.9831963866 2706636.691197892 2741471.182336447 2426304.8489254364 1.151035364456225 0.9877272833406662 1.0281300579581276 0.907035776928012 1.0390845642218522 1.1203900937689784 0.9648614370256036 1.1155385904605555 1.1298956038234815 1.0 21.210329396123313 2.99837863885765 24.999328827699927 1.0693835276325727 1.0114852030230777 0.08023606590452736 0.07440297871812143 138.28543341762648 2132235.840481909 0.02122943141317353 0.02501842748336548 996.273638185603 -2.99837863885765 -0.05789832460949507 GGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR 48 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 90.059 5.7857e-06 283150000.0 120420.0 173160.0 151980.0 145360.0 145030.0 187450.0 149360.0 95783.0 192070.0 153620.0 False True 119771.67209991967 178923.52592256965 173377.46296615902 163762.5610959034 163498.71083984224 174492.02270983683 142134.88618939143 102930.81383621876 144736.92210614096 143815.84007930124 0.8328127974907116 1.244115570467827 1.2055519257861809 1.1386962729947088 1.136861633250466 1.2133018352750329 0.9883117611454836 0.7157126348492757 1.0064045937243897 1.0 17.13386305943037 2.0202998632565046 6.491376525651163 0.8695648735797457 1.1361019931102665 0.3582299441274861 0.13189024356403672 0.1342191672165191 21.697622225543903 0.04922078603501541 0.035058184842192266 104.78517987832186 -2.0202998632565046 0.26653711953052084 GGDVS(ph)PSPYSSSSWR ddPTM_BT-474_Trastuzumab_2h_R1 8 GGDVSPSPYSSSSWR 15 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 GGDVS(1)PSPYSSSSWR;GGDVS(0.997)PS(0.003)PYSSSSWR;GGDVS(0.97)PS(0.03)PYSSSSWR;GGDVS(0.956)PS(0.044)PYSSSSWR;GGDVS(0.829)PS(0.171)PYSSSSWR;GGDVS(0.994)PS(0.006)PYSSSSWR;GGDVS(0.977)PS(0.023)PYSSSSWR;GGDVS(0.833)PS(0.167)PYSSSSWR 314.58 2.9843000000000003e-56 17195950000.0 4738280.0 5694210.0 5035280.0 5547870.0 5469490.0 5160270.0 5154110.0 5152390.0 5763420.0 5207760.0 True False 4712769.626952398 5883738.337627362 5744203.65656166 6250229.773164068 6165997.131292894 4803552.68086898 4904786.008687764 5536887.5051062945 4343102.366871322 4875396.2982123485 0.9666433944416825 1.206822579691571 1.1782024076007678 1.2819941992112163 1.2647171130588435 0.9852640456387696 1.0060281685175403 1.135679474330424 0.8908203766868753 1.0 22.21708806289988 2.729694220805606 24.87023592774348 1.0223120586337877 1.1867865713002579 0.4394322724655424 0.09815987085556131 623.227184368413 1748148.2984297452 0.032121148703992054 0.03071202546247545 536.6538146996319 -2.729694220805606 0.16447451266647017 GGEADNLDEFLKEFENPEVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGEADNLDEFLKEFENPEVPR 21 1 O60216 O60216 RAD21 Double-strand-break repair protein rad21 homolog 0 ; 201.32 6.3792e-22 42268000.0 58326.0 58442.0 55389.0 51544.0 50035.0 68909.0 67687.0 49826.0 92454.0 68074.0 False True 58011.97929662783 60387.206641064964 63187.28975018146 58069.46511507463 56406.660669320205 64145.48302433798 64412.72122054995 53544.269131301364 69669.95052012896 63729.45903891641 0.9102851361283768 0.9475556132398598 0.9914926425406518 0.9111871651007503 0.8850955510994604 1.0065279698226768 1.0107212926633555 0.8401808196520945 1.0932142147571815 1.0 15.959672794180175 2.727604574560003 24.78062095441528 0.9704703780219094 0.9326157617148173 0.146071871161628 0.06537538046467736 1965.1158223772186 4444731.250084249 0.021671205115546852 0.020614905345184745 534.0778596737531 -2.727604574560003 -0.03785461630709208 GGEGPGHDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGEGPGHDFR 10 0 P78332;P78332-3 P78332 RBM6 RNA-binding protein 6 0 90.05 0.011384 0.0 191070.0 231580.0 286310.0 261310.0 250150.0 200980.0 228250.0 196200.0 229010.0 240940.0 False True 190041.30034987282 239288.0003069335 326619.9593488677 294391.8192072824 282005.11974478763 187086.72565603114 217208.67550032536 210841.44028341305 172573.5540767811 225563.00292088822 0.8425198188043544 1.0608477330427235 1.448020974713762 1.3051423123256367 1.2502277239308406 0.8294211516666504 0.9629623328631913 0.9347341432467164 0.7650791656524801 1.0 17.783170929231694 2.740925753295663 24.988903357828512 0.9032149538720268 1.196349268451001 0.4332922083291263 0.16127337172606968 211.02096229327788 2229552.4038162315 0.05344418586245167 0.05431641625408802 550.713538725909 -2.740925753295663 0.2931343145789743 GGEQISR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGEQISR 7 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1;Q96I24;Q96I24-2 Q96AE4;C9JSZ1;Q96I24 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 0 95.741 0.030809 159850000.0 161340.0 206810.0 203730.0 191870.0 189110.0 160620.0 171130.0 190880.0 214430.0 195770.0 False True 160471.36336655924 213693.545830715 232413.41314709515 216160.72232712543 213192.0375572129 149516.7174588104 162851.78811991526 205124.4348690004 161586.59971479047 183275.79099287046 0.8755731594294506 1.1659671180413993 1.268107543762483 1.1794286695264309 1.1632307595142568 0.8158017851066139 0.8885613710228117 1.119211837841583 0.8816581766714421 1.0 17.48365670646223 2.766401110549721 24.745329952852916 0.9581428292876178 1.1428014187057263 0.37138745656421623 0.12167820237027134 751.1562609475649 667645.1369551054 0.03865097732746336 0.040986622690732985 583.9842179436399 -2.766401110549721 0.18465858941810842 GGET(ph)PGSEQWK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGETPGSEQWK 11 0 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 GGET(1)PGSEQWK 190.35 2.5803000000000007e-05 349920000.0 532430.0 420540.0 379300.0 337280.0 407790.0 545220.0 474750.0 472460.0 708430.0 510590.0 True False 529563.4560385344 434537.41967820184 432702.14306529827 379979.61341790267 459719.63933930424 507530.22470982844 451784.52877888 507717.3643032679 533846.9189756522 478003.70906190784 1.1078647424678223 0.9090670457996874 0.9052275847701793 0.7949302614484322 0.9617491049212015 1.0617704739276332 0.9451485840256689 1.062161976315359 1.1168258924671062 1.0 18.866662287254677 2.937114666448489 5.946854874858618 1.0336747433136242 0.9205609372967319 0.27504082736408453 0.08294906230212938 0.28822732748899393 20.442348782766945 0.025764018577558532 0.027684141125056485 865.1963257625862 -2.937114666448489 -0.11311380601689225 GGFCNFMHLKPISR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGFCNFMHLKPISR 14 1 P0DN76;Q01081;Q01081-2;Q01081-4 P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit 0 ;; 169.19 2.0255e-06 2986940000.0 1941640.0 2637560.0 2572570.0 2352810.0 2258810.0 2505170.0 2528630.0 2157610.0 3340820.0 2426990.0 False True 1931186.4259764857 2725349.590161312 2934765.4948207075 2650675.504760956 2546456.0644842084 2331993.494435863 2406310.506595346 2318621.814321583 2517519.675694474 2272097.4203493237 0.8499575804630664 1.1994862393454515 1.2916547805285135 1.1666205335303923 1.120751267827549 1.0263615783153042 1.0590701283510053 1.0204764080780948 1.108015727295451 1.0 21.11559326369216 2.851564749886649 4.3519128973251 1.0435734139144657 1.143771258444427 0.11823532732216901 0.10911327245064667 0.4500592193726916 14.120067689396839 0.034363164286089376 0.036625392421077874 710.5010922234563 -2.851564749886649 0.10019784452996139 GGFDGEYQDDSLDLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGFDGEYQDDSLDLLR 16 0 Q5F1R6;Q5F1R6-3;Q5F1R6-2 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 0 ; 199.96 8.5541e-11 80249000.0 92810.0 110911.0 105558.0 113163.0 101143.0 115973.0 114896.0 103379.0 122504.0 114424.0 False True 92310.32127216048 114602.60558788462 120419.64887341634 127489.42419713632 114022.96152847116 107956.05948107729 109338.04153465664 111093.66592792519 92314.53066949912 107121.362356685 0.8617358782722742 1.0698389477748529 1.1241422459924628 1.1901400560294522 1.0644278509902227 1.0077920697238052 1.0206931570809443 1.0370822727031188 0.8617751738641714 1.0 16.70888668835147 1.3716755971363657 6.2677291395235875 0.9317868984863455 1.0538356117786691 0.22478956330918765 0.08583172752624078 0.3003109260085418 14.82251405552115 0.06034303252534459 0.021825421670752895 23.532908008860996 -1.3716755971363657 0.12204871329232359 GGFDS(ph)PFYR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGFDSPFYR 9 0 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8Y6S1;A0A2R8YEH9 A0A2R8YFV7 TSC1 Hamartin 1 GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR 144.77 0.0001036 2160260000.0 2020110.0 2294130.0 2137050.0 2254780.0 2233190.0 2229110.0 2225330.0 1980550.0 2528820.0 2299750.0 True False 2009233.9522153204 2370488.7302191276 2437928.0644284124 2540234.9168121954 2517573.5093458425 2075016.8724605197 2117682.286313865 2128348.6980291214 1905626.1954519236 2152977.986084969 0.9332347869793893 1.1010278532989954 1.1323515986624666 1.1798703624608 1.1693447520677458 0.9637891728906083 0.9836061028030822 0.988560362337641 0.8851117883082326 1.0 21.037902137538836 2.7234430660905633 24.482610053479153 0.9672228937529735 1.1089298798591587 0.49660879833322613 0.06979567116737044 535.0747984652093 866543.0971706216 0.023312398271746936 0.022068471908501582 528.984645331215 -2.7234430660905633 0.14170698610618515 GGFGFR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGFGFR 6 0 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ;;;; 135.03 0.032054 5690170000.0 3701560.0 4821340.0 4451690.0 4351120.0 4239250.0 4567940.0 4594470.0 4007430.0 4943730.0 4481990.0 False True 3681631.2122419816 4981815.387338428 5078449.257216863 4901971.345869619 4779093.359496669 4252169.05957414 4372217.933520178 4306484.7759172125 3725413.984088052 4195945.560975307 0.8774258766565652 1.1872926650126636 1.2103229613961977 1.1682638095834121 1.1389788761667858 1.013399482376927 1.0420101667152943 1.0263442919684145 0.887860419052271 1.0 22.000564529550974 2.6976408371126617 5.030036685240934 1.000858821265901 1.1286839245076983 0.28886834502213354 0.09492910531904658 0.26509670293662857 16.709264896998874 0.03103900793155715 0.0297868444139378 498.4720789922293 -2.6976408371126617 0.1278251032417972 GGGAPWPGGAQTYS(ph)PSSTCR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGGAPWPGGAQTYSPSSTCR 20 0 A0A087WXN9;Q765P7 A0A087WXN9 MTSS1L MTSS1-like protein 1 GGGAPWPGGAQTYS(0.977)PS(0.019)S(0.004)T(0.001)CR 161.86 2.3024e-11 167680000.0 52620.0 61652.0 53970.0 54003.0 65470.0 57123.0 53212.0 46546.0 53903.0 52079.0 True False 52336.69976663161 63704.04955057897 61568.506884350514 60839.77426294767 73807.21642890768 53174.22146307824 50637.93227041976 50019.498875798876 40619.32791319474 48755.273632924924 1.0734572050742859 1.306608389283226 1.262807124166619 1.2478603795972127 1.5138304213939417 1.0906352790351106 1.0386144615179322 1.0259300204608062 0.8331268575993409 1.0 15.573270656515884 2.511077547399755 7.923060692107441 0.9935737264354148 1.2820937236253434 0.6206751077518902 0.11325491368560894 0.1819660285701253 38.025035716197664 0.03698796803970569 0.034207197782066455 324.3975364357793 -2.511077547399755 0.2885199971899286 GGGDRYEDRYDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGGDRYEDRYDR 12 2 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;; 184.1 8.3007e-06 1665320000.0 636846.0 1081810.0 964700.0 1189540.0 1012600.0 848520.0 978150.0 814980.0 1359130.0 1087600.0 False True 633417.2918962429 1117817.391882044 1100521.3746772832 1340135.6420337176 1141548.6078495784 789863.809601232 930833.1476041335 875797.9459845857 1024190.622908936 1018188.4368587928 0.6221022248596683 1.0978492304731096 1.0808621811425154 1.3161960925112863 1.1211565232182006 0.7757540559368717 0.9142051843329132 0.8601531055356558 1.005894965836246 1.0 19.957573156046006 2.7540568288819407 24.786796500033947 0.8994284644190684 1.0671892388637576 0.12674911284452872 0.17396906330460424 1300.691972591668 2080505.2315272011 0.0539260599406045 0.057004820103083095 567.6188753728557 -2.7540568288819407 0.16776077444468918 GGGEYGETWHK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGGEYGETWHK 11 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ;;; 141.95 3.7883e-05 2489250000.0 2284290.0 2592150.0 2385700.0 2230910.0 2337240.0 2615760.0 2607330.0 2203180.0 2964390.0 2796110.0 False True 2271991.636448476 2678428.145762237 2721585.8231238634 2513342.977259644 2634873.660093173 2434938.6680367184 2481203.486932152 2367592.4791213516 2233855.8052908983 2617659.8659297894 0.8679476145925733 1.0232147348948495 1.0397018568175052 0.9601487993043388 1.0065760240233768 0.9301967378301196 0.9478708518346144 0.9044691061420181 0.8533789413841342 1.0 21.319846217556172 2.4392458126843803 1.8438753068262617 0.9144887936717573 0.9841087301560385 0.15744287314848704 0.056312355774754054 0.5144266657576807 3.558966331751157 0.024062772820937994 0.018596349616148974 274.9449914138242 -2.4392458126843803 0.06961993648428122 GGGFGGNDNFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGGFGGNDNFGR 12 0 F8W6I7;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ;; 208.66 1.4951e-07 526270000.0 537730.0 662730.0 594100.0 638970.0 603330.0 614250.0 616440.0 525780.0 702050.0 660050.0 False True 534834.9214274192 684788.5674212557 677744.1159902295 719863.5364849308 680160.4992829212 571788.3432889694 586620.4421705172 565016.3734567423 529039.1844880318 617925.0439027644 0.8655336544533706 1.1082065279247895 1.096806356495365 1.164969025916689 1.1007168361183142 0.9253360887877283 0.9493391600791418 0.9143768795777312 0.8561543017364424 1.0 19.237072320093525 2.7324287556363878 23.25281781337511 0.9247538807534522 1.076593287766539 0.419202011708123 0.08088676811899898 173.57924033578527 658232.3923638973 0.025833099009849547 0.024977643677366834 540.0435154059104 -2.7324287556363878 0.15183940701308674 GGGGGQDNGLEGLGNDS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 GGGGGQDNGLEGLGNDSR 18 0 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R 322.25 1.0619999999999997e-61 2412930000.0 1889350.0 2025820.0 2121790.0 2080830.0 2227130.0 2607360.0 2339930.0 2298510.0 3225710.0 2940690.0 True False 1879177.949526518 2093248.19406595 2420519.589070708 2344262.8646476963 2510741.804266277 2427119.340265249 2226738.646499351 2470036.4877972854 2430776.992799503 2753012.6465486255 0.6825896538769592 0.7603481940739344 0.8792257427895384 0.8515263696978046 0.9119979188667815 0.881623026072205 0.8088370568478683 0.8972121834942897 0.8829516260475226 1.0 21.392579806599123 4.429543442376528 2.0917362818376875 0.8832471425632908 0.6742241519836846 0.6879409694788858 0.04638786342532447 0.21422695777534057 1.5802820692187858 0.011235750553892235 0.06660427209299737 26887.06780330548 -4.429543442376528 -0.20902299057960627 GGGGNFGPGPGSNFR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;; 281.54 2.1148000000000003e-33 2885440000.0 2596730.0 2329200.0 1211440.0 1537960.0 1261010.0 1263020.0 1240210.0 588342.0 1994960.0 792881.0 False True 2582749.494203827 2406726.0139688677 1382000.2219747575 1732665.5783094089 1421592.1489081525 1175710.4002292787 1180216.3042377143 632247.0675801407 1503328.8390944295 742278.6557604237 3.4794877559262996 3.242348402842473 1.86183478569645 2.3342521906875904 1.915173146736665 1.5839205278303845 1.5899908950347594 0.8517651190339539 2.025289057455588 1.0 19.501601359146484 7.999999998210981 0.2929206611227694 1.104163327945402 22.323914036989738 0.7893604632342797 0.37085400956808084 20.989252113632244 0.29926556375281144 0.3714680222710313 231.4627496805791 99999999.58806323 -7.999999998210981 21.219750709044337 up GGGGYTCQS(ph)GSGWDEFTK ddPTM_BT-474_Trastuzumab_2h_R1 5 GGGGYTCQSGSGWDEFTK 18 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 GGGGYTCQS(0.998)GS(0.002)GWDEFTK;GGGGYTCQS(0.983)GS(0.017)GWDEFTK;GGGGYTCQS(1)GSGWDEFTK;GGGGYTCQS(0.999)GS(0.001)GWDEFTK;GGGGYTCQS(0.998)GS(0.002)GWDEFTK 272.13 5.9309e-39 1271430000.0 1347636.0 913332.0 887619.0 776626.0 782367.0 1289418.0 1136665.0 999995.0 1613520.0 1177264.0 True False 1340380.4775124362 943731.7034991459 1012588.0398773444 874946.7719707423 881996.7999974828 1200283.5686234862 1081680.1714680276 1074619.7047717206 1215889.6160602928 1102130.00361358 1.2161727501453536 0.8562798403136747 0.9187555338819811 0.7938689347917517 0.8002656647633752 1.0890580645550776 0.981445172458328 0.9750389711271259 1.1032179616503737 1.0 20.071862978810792 2.7265540991523203 24.91626356781967 1.0197803128665066 0.9069406892203563 0.18201538212267832 0.11752414855522486 1291.4040882524073 2679953.833805351 0.037960637226283615 0.03603632569604924 532.7875884213868 -2.7265540991523203 -0.1128396236461503 GGGGYTCQSGS(ph)GWDEFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGGGYTCQSGSGWDEFTK 18 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 GGGGYTCQS(0.385)GS(0.615)GWDEFTK 295.17 2.8284e-49 490050000.0 464760.0 322540.0 326670.0 307140.0 276040.0 462230.0 446690.0 334950.0 550830.0 406040.0 True False 462257.7837996901 333275.54892045254 372662.29653345916 346023.8925082267 311192.057782735 430277.12807238125 425081.89817849 359945.66984163725 415085.3272438464 380126.1795716663 1.2160640562051561 0.8767497921242732 0.9803647224544819 0.910286928667037 0.81865463234706 1.1319323719224654 1.1182652524945287 0.9469110237217314 1.0919672191785705 1.0 18.536118862534853 2.7165219477997584 24.998216745958562 1.0506612700522775 0.9540978526022559 0.16035482609091234 0.11035188892285595 1538.0749244360518 1744619.096103027 0.03529638776902462 0.03330401821462475 520.6213186079201 -2.7165219477997584 -0.09656341745002162 GGGHVAQIYAIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGGHVAQIYAIR 12 0 P62249;M0R210;M0R3H0;M0R1M5;M0QX76 P62249 RPS16 40S ribosomal protein S16 0 ;;; 155.11 6.9959e-05 2681120000.0 1669720.0 2353460.0 2311460.0 2171510.0 1831100.0 1925260.0 2005820.0 1683700.0 2608000.0 2093310.0 False True 1660730.4130433302 2431793.4934033896 2636893.4764295123 2446422.943350061 2064279.731219989 1792171.3077745568 1908790.8236234954 1809346.2436553626 1965293.3454095665 1959713.1636271444 0.8474354532423304 1.2408925645539335 1.3455507292449909 1.248357662109126 1.0533580982837851 0.9145069498117306 0.9740154115669667 0.9232709547689752 1.0028474482317065 1.0 20.90221107688114 3.031387302027815 4.471273814762638 0.9577504964110778 1.1868775316953815 0.3787395788752982 0.12433674311178396 0.19780250299017427 9.280567195616799 0.037803873469973596 0.04444888233963173 1074.9476188685608 -3.031387302027815 0.22912703528430367 GGGPGKS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGGPGKSPTR 10 1 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 GGGPGKS(0.608)PT(0.392)R;GGGPGKS(0.82)PT(0.18)R 94.688 0.004804699999999999 1999160000.0 524630.0 482390.0 468030.0 417300.0 420970.0 387100.0 508470.0 480980.0 681640.0 543080.0 True False 521805.45037187304 498446.05953908764 533924.5558103132 470130.13721326663 474578.03421532374 360340.68813538447 483873.36355597095 516873.1699669516 513658.9555080441 508420.16944581957 1.0263272028343082 0.9803821514051975 1.050163994068712 0.9246882115745148 0.9334366784319672 0.7087458558698754 0.9517194490600073 1.0166260133431486 1.010304048456486 1.0 18.955661738812484 3.726182757381901 23.974846940296658 0.9326110531082406 1.0151002186815 0.1719456471209201 0.08410770257465777 832.5559361315496 1612589.9347624022 0.024398687813127186 0.03813233254589267 5323.322252177434 -3.726182757381901 0.08248916557325936 GGGPGKSPT(ph)QGST ddPTM_BT-474_Trastuzumab_2h_R1 1 GGGPGKSPTQGST 13 1 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A 1 GGGPGKS(0.334)PT(0.644)QGS(0.011)T(0.011) 83.76799999999999 0.064019 112130000.0 235290.0 222150.0 214810.0 213090.0 235250.0 247980.0 260970.0 250820.0 321620.0 270250.0 True False 234023.2247831767 229544.12845748916 245053.38083800857 240067.17215139026 265207.6930640071 230837.72628213066 248345.8840977872 269537.4620381528 242361.06048720263 253002.4136273344 0.9249841589570227 0.9072803898052979 0.9685811978021895 0.948873051088764 1.0482417509844422 0.9123933759072682 0.9815949205274929 1.065355299080957 0.9579397169079731 1.0 17.94879162264326 4.227220258199681 0.533657740830698 1.0062466822849008 0.8754910429678366 0.28441852627623865 0.043214963426766624 3.0365777206768345 0.9706643498217501 0.027064357841533434 0.23249902059219987 16874.086000373343 -4.227220258199681 -0.13075563931706413 GGGPGKSPT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 GGGPGKSPTR 10 1 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 GGGPGKS(0.367)PT(0.633)R;GGGPGKS(0.383)PT(0.617)R 83.573 0.025077 1544870000.0 934430.0 958200.0 905690.0 794630.0 796800.0 847850.0 1030620.0 962730.0 1277130.0 1061000.0 True False 929399.1327049326 990093.1077558674 1033203.2796013989 895230.0765247497 898267.7569963892 789240.1251242216 980764.9732492673 1034573.8012438848 962398.4241652308 993286.0716321986 0.935681229454587 0.9967854538913604 1.0401870207478163 0.9012812140350259 0.9043394271303208 0.7945748437077322 0.9873942676329325 1.0415668061707952 0.968903573352023 1.0 19.921849755823374 -1.0324028720581557 5.439090968843169 1.0000002374391292 0.9565088301321734 0.036821429671125894 0.0702814245029674 2.2173772145172181e-07 3.933686230555721e-08 0.07439542706066944 0.01753507442641394 0.09281050332943734 1.0324028720581557 -0.04349140730695589 GGGPQAQSHGEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGGPQAQSHGEAR 13 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 0 ;; 151.16 4.4599e-05 351213000.0 266674.0 322821.0 286559.0 331435.0 346393.0 274047.0 284293.0 290587.0 317652.0 302548.0 False True 265238.25681426696 333565.9018355843 326904.0163845211 373394.6370172042 390504.0953178342 255102.77592724827 270540.66148527514 312272.0775108876 239370.92091872706 283239.1276156258 0.9364463838280592 1.177682986964482 1.1541626297767427 1.3183017479277277 1.3787081559147225 0.9006622004338313 0.9551669776797812 1.1025033163308617 0.8451195388638861 1.0 18.111661052420583 2.7204956380331407 24.96912420774053 0.977742488270566 1.1970029616392324 0.4580092000831454 0.12566981649083178 827.9835873784317 1144424.3979042764 0.04237048695459813 0.04002175945332352 525.4067380034536 -2.7204956380331407 0.2192604733686664 GGGQEERPFVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGGQEERPFVAR 12 1 Q9HA64;I3L2G3 Q9HA64 FN3KRP Ketosamine-3-kinase 0 ;;; 205.56 9.1507e-08 4391050000.0 3850550.0 4760260.0 4205990.0 4532950.0 4429320.0 4568600.0 4608440.0 4030340.0 5105820.0 4630260.0 False True 3829819.0666363183 4918702.376462064 4798156.832879553 5106821.0052261595 4993367.6473635165 4252783.435327615 4385512.151249591 4331104.436451833 3847559.075482771 4334752.842634976 0.8835149789781965 1.1347134554209373 1.106904362732452 1.1781112304714159 1.1519382600665617 0.9810901773911672 1.0117098507013746 0.9991583358231503 0.8876074865537077 1.0 22.047518306053842 2.7206746456358335 23.42448831932741 0.9807865382143472 1.0991819897866912 0.327235969171767 0.08197120918426293 429.20156124940763 562105.494923003 0.026537158160260452 0.025079678101437262 525.6233449149819 -2.7206746456358335 0.11839545157234399 GGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGGQSVQFTDIETLKQESPNGSR 23 1 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 GGGQSVQFTDIETLKQES(1)PNGSR;GGGQSVQFTDIETLKQES(1)PNGSR 282.58 2.8625999999999996e-52 1103910000.0 685070.0 655140.0 638600.0 621110.0 668080.0 1153640.0 1087510.0 864900.0 1363580.0 1079760.0 True False 681381.6592384317 676945.9388595076 728509.3291892943 699742.462316157 753156.0279796027 1073891.582176455 1034902.9866083636 929443.2298732111 1027543.9800358816 1010848.7923709558 0.6740688264960423 0.6696807118616862 0.720690705363132 0.6922325748393131 0.7450728869280911 1.0623661919381946 1.0237960359837681 0.919468111242625 1.016516008913427 1.0 19.947135777434088 2.837250736451775 4.7700764592663285 0.9939722485300073 0.6937066985979827 0.9422410379013556 0.03772420796297712 0.05517180083885307 2.050722397944529 0.012875757860315439 0.013682224650320186 687.4652280227806 -2.837250736451775 -0.3002655499320246 GGGSCSGSAGGGGS(ph)GSLPSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGGSCSGSAGGGGSGSLPSQR 21 0 O15234 O15234 CASC3 Protein CASC3 1 GGGSCSGSAGGGGS(0.999)GS(0.001)LPSQR;GGGSCSGSAGGGGS(0.998)GS(0.002)LPSQR 231.59 3.6154e-35 272110000.0 204863.0 315266.0 283873.0 279803.0 316006.0 270565.0 296887.0 266795.0 270039.0 326879.0 True False 203760.04037041886 325759.4382276785 323839.85093165166 315226.031111152 356247.4909856941 251861.4783915017 282525.4415915231 286704.5976575593 203491.50678721422 306017.3023648084 0.6658448355561055 1.0645131360557356 1.058240329645141 1.0300921832693164 1.1641416620325784 0.8230301896173615 0.9232335538162472 0.9368901543866756 0.6649673244443824 1.0 18.223253700329277 2.6989819287467385 24.98266039193399 0.8761910730600869 1.0056302832033779 0.15507668555010012 0.14699694405188454 991.0564216613479 625568.767441849 0.046603388204548485 0.0439385255179702 500.013728673656 -2.6989819287467385 0.12943921014329096 GGGSQHYPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GGGSQHYPEER 11 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YKH2 Q9NWH9 SLTM SAFB-like transcription modulator 0 ; 93.959 0.0088607 820690000.0 401030.0 604670.0 559260.0 650910.0 677470.0 559980.0 579890.0 534920.0 577490.0 573660.0 False True 398870.89903862134 624796.0754192665 637998.9468249378 733315.1392606949 763741.7888207122 521269.90065113053 551838.5053050763 574838.4466687219 435175.32746954355 537048.5276649649 0.7427092310873162 1.1633884895575815 1.187972620647329 1.3654541470378445 1.4221094546919022 0.9706197369492133 1.0275393691225945 1.0703659298128307 0.8103091341887554 1.0 19.03469293035405 GGGT(ph)PDANSLAPPGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGGTPDANSLAPPGK 15 0 Q9BRQ0;Q5T171 Q9BRQ0 PYGO2 Pygopus homolog 2 1 GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK;GGGT(0.999)PDANS(0.001)LAPPGK;GGGT(1)PDANSLAPPGK 244.05 5.8079e-17 4839720000.0 7332410.0 7560680.0 6934380.0 6513130.0 6635050.0 8012050.0 7760350.0 7027930.0 9241300.0 8295760.0 True False 7292933.11926733 7812332.6632724255 7910680.429288546 7337691.59019374 7479984.288477529 7458195.841837024 7384952.223084119 7552389.823705429 6963905.442075711 7766317.494442538 0.9390464817445391 1.005924966222771 1.0185883380314171 0.9448096340955007 0.9631314060788906 0.9603259005537693 0.9508949677074986 0.9724544263236479 0.8966804984548955 1.0 22.88879925652098 3.7179060846469674 24.957157157238225 0.9556087040720765 0.9896604373471283 0.18577791105317198 0.030996310876168207 1159.534055420852 1401080.6394207724 0.007837708737291012 0.012158066348965775 5222.832340336229 -3.7179060846469674 0.03405173327505173 GGGYESEDAYQNAELVFLDIHNIHVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGGYESEDAYQNAELVFLDIHNIHVMR 27 0 Q13614;Q13614-2;C9JEX3 Q13614 MTMR2 Myotubularin-related protein 2 0 118.22 0.00023578 15564000.0 15255.0 18982.0 17347.0 18769.0 19064.0 15746.0 18903.0 6603.8 15334.0 12922.0 False True 15172.868774989825 19613.804395138683 19789.306817173027 21145.153475571064 21491.687398819235 14657.51608209705 17988.589673527487 7096.609089416936 11555.141165072975 12097.306896919203 1.2542352528771399 1.6213364315105283 1.6358439928652824 1.7479223810512783 1.7765679239147418 1.2116346395932016 1.4869912639902196 0.5866271848674199 0.9551829397678337 1.0 13.5623982899499 1.7537892675184776 24.999927737398774 0.8248569573548674 1.5460347979145386 0.7051037905785332 0.20310344133894662 2.6577436388725855 4368.576707398181 0.09520447538121164 0.05279609992486162 56.72692828428572 -1.7537892675184776 0.7211778405596712 GGHFAAFEEPELLAQDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGHFAAFEEPELLAQDIR 18 0 P07099 P07099 EPHX1 Epoxide hydrolase 1 0 ; 204.43 1.0734000000000002e-15 182956000.0 90729.0 138935.0 144730.0 107439.0 137821.0 144681.0 103432.0 88247.0 133753.0 104836.0 False True 90240.5251449395 143559.36748701887 165106.72598428873 121040.76638403119 155371.68742093313 134679.54301244023 98428.59901138942 94832.43924918614 100791.36534837646 98145.27672538476 0.9194586653154676 1.4627231414172375 1.682268688754787 1.2332816251841556 1.5830786014865559 1.3722468111153237 1.0028867643503356 0.9662455740435875 1.0269609370035768 1.0 16.582631218725048 2.2447189660443696 5.864369055919724 0.9911871327337667 1.3980481093421675 0.47212038148056656 0.19428548493005185 0.13161104847737826 15.868847466996963 0.06978616281899952 0.054946254102672634 175.67864214880922 -2.2447189660443696 0.4068609766084008 GGHGAASPSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGHGAASPSEK 11 0 Q07065 Q07065 CKAP4 Cytoskeleton-associated protein 4 0 79.65899999999998 0.02654 66707000.0 79670.0 113980.0 122860.0 93629.0 128330.0 133660.0 118960.0 79117.0 136350.0 119900.0 False True 79241.06557216922 117773.7553976349 140157.62008173624 105482.42180000241 144672.06482849744 124420.39880179668 113205.45032866916 85021.11228798554 102748.36949639367 112247.87934844555 0.7059471059242473 1.049229224474127 1.248643813097367 0.93972752458475 1.2888623434871236 1.1084432019919466 1.0085308603225462 0.757440699828802 0.9153702510266317 1.0 16.77632866343547 1.9498397964150245 7.2403243148949485 0.8676225699086578 1.0695675137837186 0.16619057668897586 0.16221116100741353 0.37978286601017125 47.08984703612403 0.06854291043976332 0.043081726494253646 89.09222319912999 -1.9498397964150245 0.2019449438750608 GGHLLFPCYQWLEGAGTLVLQEGTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGHLLFPCYQWLEGAGTLVLQEGTAK 26 0 O15296-4;O15296;I3L1D5;O15296-3;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 198.55 9.1295e-18 162370000.0 64763.0 56451.0 57881.0 67894.0 63807.0 62624.0 77359.0 50310.0 91876.0 76977.0 False True 64414.32320384573 58329.937409649916 66030.14168932916 76489.3734386713 71932.44323628099 58294.950281039346 73616.8496299219 54064.38766900357 69234.3908753257 72064.26195667461 0.8938455963452722 0.8094155941639721 0.9162675075896399 1.061405075995326 0.9981708170344841 0.8089300951432287 1.021544488642383 0.7502246772680103 0.9607312833780183 1.0 16.136996356347943 2.8381960051070125 0.005234000255811312 1.8223790853405994 2.5472455098744317e-06 0.0258618314033513 0.09796599480842354 76288.60606720099 145.57166482893172 24948.715342392436 25731.447890535623 688.9631679684538 -2.8381960051070125 -1.8223765380950896 GGHMDDGGYSMNFNMSSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GGHMDDGGYSMNFNMSSSR 19 0 P38159;P38159-2;H3BT71;H0Y6E7;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;;;; 284.5 6.480899999999998e-40 3694960000.0 1665955.0 1872680.0 1854510.0 1955200.0 1694621.0 1829118.0 1882740.0 1526594.0 2225490.0 1811078.0 False True 1656985.6833850006 1935011.0217410359 2115608.888310114 2202728.119528827 1910420.9395444004 1702675.37794063 1791664.6734347537 1640516.1961672595 1677047.8095381681 1695493.451498114 0.9772881646466469 1.1412671750700585 1.247783579724706 1.2991663975950642 1.1267639741435624 1.0042358915843468 1.0567216711168446 0.9675744808791343 0.9891207825405356 1.0 20.693273781579325 2.818145395707654 3.9127867594809977 1.002499035035694 1.174306112873631 0.4790964328410894 0.08109385190353259 0.20924074060312908 6.091263436062931 0.02730519420664199 0.02878611866780373 657.8780488447464 -2.818145395707654 0.17180707783793703 GGHSGQLGPSSVAPSFRPEDELEHLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGHSGQLGPSSVAPSFRPEDELEHLTK 27 1 Q93052;A0A087WZF1;C9JUT4;C9JXK9 Q93052 LPP Lipoma-preferred partner 0 250.82 1.6344999999999999e-46 564900000.0 400130.0 432720.0 440890.0 411410.0 441440.0 479180.0 482280.0 388020.0 611300.0 498510.0 False True 397975.7445386223 447122.8236152367 502963.4797154212 463494.46381718235 497654.76738012827 446055.4144683899 458950.2739114869 416976.02272563643 460653.3060003331 466694.66500411683 0.8527540046662236 0.9580628559602079 1.0777142260903807 0.9931428374333222 1.06633909641058 0.9557756878674735 0.9834058718186512 0.8934664438942284 0.9870550073596183 1.0 18.83211944973952 -0.404233025514943 7.843631815598095 1.0000030060649736 0.9739710476598422 0.014169218983468457 0.06456080185536102 0.0 0.0 0.06447627224773693 0.015197203110668264 0.39424570841198675 0.404233025514943 -0.026031958405131395 GGIDNPAITS(ph)DQELDDKK ddPTM_BT-474_Trastuzumab_2h_R1 5 GGIDNPAITSDQELDDKK 18 1 Q13017-2;Q13017;H0YK04;A0A0A0MSK6 Q13017-2 ARHGAP5 Rho GTPase-activating protein 5 1 GGIDNPAIT(0.218)S(0.782)DQELDDKK;GGIDNPAIT(0.01)S(0.99)DQELDDKK;GGIDNPAIT(0.01)S(0.99)DQELDDKK;GGIDNPAIT(0.001)S(0.999)DQELDDKK;GGIDNPAIT(0.208)S(0.792)DQELDDKK 255.99 8.6135e-31 4023930000.0 4663411.0 3042695.0 2740503.0 2434301.0 2584037.0 4488250.0 4247280.0 3784457.0 7143210.0 3887649.0 True False 4638303.713329667 3143969.2637270316 3126342.001520908 2742483.2570054936 2913098.7951627495 4177987.841704061 4041822.8402147745 4066872.3984232605 5382861.609610072 3639535.912436236 1.2744217463222873 0.8638379560932862 0.8589946841404277 0.7535255381419571 0.8004039155675693 1.147945216704125 1.1105324792658124 1.1174151035374655 1.4789967015346435 1.0 21.795323069332696 2.68129655436176 7.507122281907158 1.1689979040956087 0.8963049262540775 0.3557332704114684 0.17496527229481318 0.31755335170904725 37.17374291813207 0.05671910501345035 0.0535648604842831 480.0611424863604 -2.68129655436176 -0.2726929778415311 GGIHTADTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGIHTADTK 9 0 O00442;O00442-2 O00442 RTCA RNA 3-terminal phosphate cyclase 0 78.934 0.028367000000000007 57468000.0 60451.0 57750.0 54956.0 54319.0 51650.0 48555.0 57146.0 51859.0 70323.0 56846.0 False True 60125.5385327375 59672.17383938782 62693.32711388486 61195.77983054746 58227.32134646523 45198.507136175685 54381.6296610804 55728.98191466622 52992.83892992212 53218.039611690896 1.12979619263407 1.1212771886147999 1.178046534057456 1.1499066909842357 1.0941275133643573 0.8493080065701352 1.0218645793396322 1.047182164568567 0.99576833939371 1.0 15.699627746456313 2.986197127470637 23.54611675849205 0.9918278409040497 1.1425274027555448 0.6926143843653467 0.051274008615148955 186.27066009807913 317757.60032333626 0.01610142082130749 0.017765777104559382 968.7174600286131 -2.986197127470637 0.15069956185149502 GGIVDEGALLR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGIVDEGALLR 11 0 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YFM8;A0A286YF78 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 ;; 133.57 0.00036956 601070000.0 758590.0 845290.0 784680.0 913970.0 892980.0 850520.0 786160.0 731560.0 989210.0 829880.0 False True 754505.835727272 873424.9666614044 895156.1234391726 1029678.5082885448 1006695.7098928661 791725.5543087258 748130.4373771563 786152.7219864101 745432.4502348913 776916.3479039856 0.9711545364733614 1.1242200901265442 1.1521911282394581 1.325340251967251 1.2957581760363182 1.019061519872369 0.9629485071275823 1.0118885052520041 0.9594758203324802 1.0 19.567399743647645 2.5832354775664013 6.773925811223598 0.9872503396864938 1.177751449853444 0.5013838085117017 0.09171207873643482 0.22669058494426653 12.599911626842024 0.03240255433067664 0.030449589665277728 383.0323699069931 -2.5832354775664013 0.19050111016695026 GGLLTSEEDSGFSTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGLLTSEEDSGFSTSPK 17 0 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 GGLLTSEEDSGFSTS(1)PK;GGLLTSEEDSGFSTS(1)PK;GGLLTSEEDSGFST(0.086)S(0.914)PK;GGLLTSEEDSGFST(0.001)S(0.999)PK 420.63 2.1659999999999982e-160 908080000.0 1978300.0 1997960.0 1765620.0 1628100.0 1791090.0 2545530.0 2231370.0 2352640.0 3433010.0 2257940.0 True False 1967649.0526097906 2064460.890807673 2014203.9489558458 1834217.293067148 2019174.694877841 2369563.502633084 2123430.1084388224 2528205.943263853 2586990.685477187 2113836.3360803113 0.9308426669674928 0.9766417842148578 0.9528665557385516 0.8677196345618406 0.9552180840177998 1.1209777512988388 1.0045385596769052 1.1960272893936092 1.2238367944200668 1.0 21.011432249608742 2.7662732520652233 4.369087880642344 1.1195792274008554 0.9338953511866563 0.5922642721983944 0.07139408945488003 0.14528802115715406 6.755646569709982 0.02315364923123971 0.02376469343163025 583.8123153520896 -2.7662732520652233 -0.18568387621419902 GGLNT(ph)PLHESDFSGVTPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGLNTPLHESDFSGVTPQR 19 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 GGLNT(1)PLHESDFSGVTPQR 128.98 7.509199999999999e-05 218680000.0 64462.0 110630.0 99732.0 124900.0 114740.0 116860.0 96336.0 100750.0 101310.0 133170.0 True False 64114.94375440152 114312.2526727528 113773.39871391587 140712.32719371453 129351.45888273812 108781.74325885065 91675.85964074191 108268.47659813367 76343.50798444907 124670.97658742692 0.5142732134567037 0.9169115041991354 0.9125892956660285 1.1286694870400604 1.0375426777220194 0.8725506628446617 0.7353424361479448 0.868433692922981 0.6123599098536966 1.0 16.927766119180134 2.4682798558135426 21.13115383586247 0.799690817277888 0.9199110757183158 0.0608258747471605 0.17495853343210138 77.2320044164413 184574.4802088525 0.060909839840750386 0.05110091026796278 293.95432594274155 -2.4682798558135426 0.12022025844042772 GGLS(ph)PANDTGAK ddPTM_BT-474_Trastuzumab_2h_R1 5 GGLSPANDTGAK 12 0 P30419;B7Z8J4;K7EN42 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK 221.73 3.457e-11 8273800000.0 11600900.0 10593290.0 9745620.0 9211940.0 9556000.0 11651900.0 11320800.0 10911900.0 15476200.0 11922500.0 True False 11538442.043381143 10945881.253870979 11117718.585552434 10378170.659478515 10772899.957150482 10846431.578622298 10773169.654344294 11726201.38750547 11662297.880455334 11161595.842634203 1.033762752751492 0.9806734993987819 0.9960689082725814 0.9298106476707192 0.9651755993530056 0.9717635122741083 0.9651997623129993 1.0505846612645326 1.0448593592601327 1.0 23.41203997719033 1.7442506714275454 9.879521434191764 1.0350890969935533 0.9758019875141604 0.44268171031810544 0.027794910078477838 0.08452127111487935 39.29741208834979 0.01330711255934417 0.007216989814140191 55.49459310493616 -1.7442506714275454 -0.059287109479392974 GGLWDDDDAPRPSQFEEDLALMEEMEAEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGLWDDDDAPRPSQFEEDLALMEEMEAEHR 30 1 A0A087WYJ2;M0R2B7;P28340;M0QZR8;A0A2R8Y7K6;M0R2J2 A0A087WYJ2 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit 0 ;;; 290.02 4.7186e-81 257281000.0 123726.2 145148.4 129372.6 138163.2 134819.2 151332.3 143451.2 110808.7 154491.2 145667.6 False True 123060.07188647322 149979.57674993918 147587.13755320225 155654.64695380806 151987.62598399541 140871.05429891613 136511.91741919942 119077.8078691775 116418.91383601935 136370.96905569316 0.9023920027745507 1.0997910903506767 1.08224747961517 1.1414060340822214 1.1145159929304638 1.0329988506672938 1.0010335657543703 0.8731903035795454 0.8536927957773366 1.0 17.057177027471056 2.0216066010306903 2.4134054192103775 0.8971893780079614 1.0722941682068887 0.47313800244227733 0.07145530428890946 0.22821251992292751 2.5183705247815955 0.0370015653401564 0.020784080304144244 105.10094018137603 -2.0216066010306903 0.17510479019892733 GGMGSGGLAT(ph)GIAGGLAGMGGIQNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGMGSGGLATGIAGGLAGMGGIQNEK 26 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 1 GGMGS(0.467)GGLAT(0.533)GIAGGLAGMGGIQNEK 84.181 3.1001e-05 0.0 15802.0 13820.0 14590.0 15947.0 13858.0 14766.0 19258.0 14771.0 21463.0 16827.0 True False 15716.923787767253 14279.990345633578 16644.145181446616 17965.888564917255 15622.734157198747 13745.261175425194 18326.416967295798 15873.287025618205 16173.731239465322 15753.086453680511 0.9977044075762811 0.9064884134053132 1.0565640727222645 1.1404678453167347 0.9917252852725055 0.8725440069056299 1.1633540526284651 1.0076302870736553 1.0267023727078277 1.0 13.943346898649464 4.2282311770781185 24.99785978781945 1.0348602611980107 0.9520964031144313 0.14098104621675767 0.07907295056130999 340.2620845982011 823460.8339266148 0.019648384233461682 0.0431795689908106 16913.410011585074 -4.2282311770781185 -0.08276385808357933 GGNFGFGDSR ddPTM_BT-474_Trastuzumab_2h_R1 10 GGNFGFGDSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;; 236.89 8.6391e-12 88375400000.0 25231100.0 31870600.0 29267200.0 31679500.0 29079200.0 29615500.0 31013800.0 26675900.0 32328200.0 29714900.0 False True 25095258.561038718 32931393.654815465 33387767.364937283 35690121.451827675 32782263.75407804 27568250.192388263 29513544.009778723 28666591.115475487 24361348.28568619 27818469.641794197 0.9021078040661104 1.183796020372726 1.2002014415191204 1.2829649477988245 1.1784351970543443 0.9910052762561026 1.060933415454237 1.0304877113875122 0.8757256815121828 1.0 24.72953972029146 2.737357738869026 24.770141320050914 1.002337531631791 1.1616377056029996 0.3680687967545071 0.1023360814628941 107.86731083354572 2221222.7795217945 0.03297541332770925 0.03270629668058914 546.2076002467793 -2.737357738869026 0.15930017397120855 GGNFGGR ddPTM_BT-474_Trastuzumab_2h_R1 7 GGNFGGR 7 0 F8W6I7;P09651-2;P09651;P09651-3;Q32P51;H0YH80;P51991;P51991-2 F8W6I7;P51991;P51991-2 HNRNPA1;HNRNPA1L2;HNRNPA3 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoprotein A3 0 ;;;;;; 164.78 0.0027572 3436790000.0 1463165.0 1850910.0 1745590.0 1767420.0 1591830.0 1238458.0 1664230.0 1445710.0 1871270.0 1645865.0 False True 1455287.482212913 1912516.4204512767 1991353.8990597245 1991175.1907823423 1794540.114984392 1152846.3134765495 1583724.8369240146 1553596.221366632 1410120.582233344 1540824.4866040822 0.9444862116776912 1.2412292490667702 1.2923950238151989 1.2922790415739147 1.1646622510130853 0.7482009297615579 1.0278424640138497 1.0082888965444068 0.9151727497147942 1.0 20.555271104942673 2.9404539076408542 11.84828628673658 0.9535895083676232 1.206357813460172 0.5218418932500393 0.11785488949138072 0.9393275172415686 185.8435391460761 0.036043647242340916 0.038259508957092916 871.8743629736492 -2.9404539076408542 0.2527683050925488 GGNIGDGGGAADR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGNIGDGGGAADR 13 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;; 155.88 0.00010912 3464863500.0 2754084.0 3585407.0 3259543.0 3361975.0 3352596.0 3399705.0 3300600.0 2870957.0 3550484.0 3361902.0 False True 2739256.3177514966 3704745.104570699 3718458.321944351 3787600.6902889386 3779529.22820666 3164691.395394754 3140937.368483569 3085202.3897642493 2675514.7922481396 3147342.5360908876 0.8703394328199661 1.1771026070686685 1.1814596852120232 1.2034281769004 1.2008636444449325 1.005512224711777 0.9979648965646828 0.9802563128690089 0.8500869421004379 1.0 21.585702769958377 2.5697300120515436 4.339835052482643 0.9632664775107441 1.1362823248560658 0.3955774971862428 0.09953803719514466 0.23474015755542715 7.716099947555067 0.03362319602384527 0.031131619781148638 371.30432848700787 -2.5697300120515436 0.17301584734532172 GGNLPPVS(ph)PNDSGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGNLPPVSPNDSGAK 15 0 Q9UK61-3;Q9UK61;Q9UK61-2;A0A087X0F1;Q9UK61-4 Q9UK61-3 FAM208A Protein FAM208A 1 GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK 256.28 9.935499999999999e-25 543300000.0 598290.0 545420.0 510100.0 479690.0 448420.0 605940.0 608070.0 538000.0 774100.0 568740.0 True False 595068.8731162675 563573.9749866481 581917.6461313176 540418.7048162763 505523.6290064272 564052.7940293335 578655.3310470225 578148.2919086453 583333.4274085686 532442.5262771882 1.1176208581177007 1.0584691251600984 1.0929210523435402 1.0149803558984238 0.9494426234903199 1.0593684129123997 1.0867939777330557 1.085841688775368 1.0955800835203886 1.0 19.022266278592376 -0.8607209399579342 8.104344430811754 1.0000000007914414 1.0611953129316272 0.140790743734578 0.04612013457857511 0.0 0.0 0.04759597069972681 0.011218477879644355 0.13780946922858003 0.8607209399579342 0.06119531214018581 GGNRFEPYANPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGNRFEPYANPTK 13 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 108.71 0.00065971 0.0 167680.0 204730.0 184900.0 195150.0 192620.0 197990.0 226890.0 205970.0 274590.0 244310.0 False True 166777.22951099928 211544.31428810133 210932.31282038914 219855.96999081987 217149.01525181282 184303.41731832834 215914.46389603004 221340.52729446779 206920.97381748978 228717.92663568593 0.7291830245411892 0.9249135710514741 0.9222377796226412 0.9612537732602751 0.9494184318909961 0.805810983115008 0.944020729253768 0.9677445513356316 0.9046994123337105 1.0 17.803209921318164 4.739063931370784 5.869116596510515 0.9301920897691918 0.7232628602786295 0.6048217171636385 0.04898265976854133 0.0920880992931122 14.485651362733892 0.011664507799723705 0.07615769620948844 54835.768129992 -4.739063931370784 -0.20692922949056225 GGNVFAALIQDQS(ph)EEEEEEEKHPPKPAKPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGNVFAALIQDQSEEEEEEEKHPPKPAKPEK 31 3 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 GGNVFAALIQDQS(1)EEEEEEEKHPPKPAKPEK 75.479 0.0012773 12485000000.0 2717800.0 1597100.0 1326700.0 1345000.0 1262600.0 2425600.0 2368100.0 2193100.0 3950700.0 2152100.0 True False 2703167.666775966 1650258.5080326616 1513487.8281168782 1515276.8620940433 1423384.6259834855 2257923.9812482274 2253545.9559794995 2356760.258336151 2977102.9216677793 2014751.1354944918 1.3416881217503382 0.8190880148716876 0.7512033627644112 0.7520913304868992 0.7064816100148945 1.1206962197314023 1.1185232340997782 1.1697525400613402 1.4776529315304703 1.0 20.94217021564005 2.580240586694839 5.084531201795153 1.1904155796875238 0.8583134989046076 0.36345373638805545 0.20151716851261517 0.24304453246543795 9.616297002775516 0.06692282489737361 0.06249415912139214 380.40006869663665 -2.580240586694839 -0.33210208078291614 GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR 38 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 208.55 5.840699999999998e-31 1437244000.0 111197.0 134863.0 156443.0 156514.0 161477.0 148968.0 170444.0 137359.0 152401.0 148385.0 False True 110598.32770714824 139351.83342859495 178468.81457306744 176328.65635225797 182040.13880083608 138670.19279295258 162198.97256068973 147609.42607486912 114843.81561877439 138914.9422612101 0.7961586126507801 1.003145026447647 1.2847344689348237 1.2693282197151738 1.31044318082453 0.9982381343268509 1.167613576484071 1.0625885428315571 0.8267203927049596 1.0 17.083842264301254 1.4215595315991456 4.9399647570197045 0.9157643879503596 1.1278163185999655 0.2138162686077092 0.15406037320386087 0.30836937902959954 13.063421120832649 0.11083841475315792 0.040909420967504405 26.39730142727578 -1.4215595315991456 0.2120519306496058 GGPAS(ph)PGGLQGLETR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGPASPGGLQGLETR 15 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR 267.51 1.9811e-25 3122670000.0 1443085.0 1471828.0 1360872.0 1408836.0 1394342.0 1860210.0 1723280.0 1363468.0 1979190.0 1910360.0 True False 1435315.5907018152 1520816.9052411853 1552470.948688529 1587194.4931487904 1571903.188787475 1731618.0611633286 1639918.3628311094 1465216.9057102157 1491445.1442872568 1788439.1892585205 0.8025520796694748 0.8503598637154164 0.8680591199369642 0.8874746777422355 0.8789245942654498 0.9682286496312186 0.916955059294475 0.8192713034417953 0.8339367383833742 1.0 20.770269633787212 4.680589368550217 1.1284235312013562 0.8920370484505846 0.766355286360083 0.2573686729537781 0.05197047399427694 2.453274181932835 2.790649827575763 0.01599865700356501 0.35783470887740065 47928.00683867345 -4.680589368550217 -0.12568176209050164 GGPASVPSS(ph)SPGTSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRI4;J3KRZ2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 GGPASVPS(0.016)S(0.818)S(0.165)PGTSVK 271.39 4.2508e-22 0.0 396140.0 341640.0 308200.0 281520.0 288800.0 390230.0 377830.0 360820.0 521870.0 392640.0 True False 394007.22625529143 353011.28087425884 351591.8810775769 317160.40313510445 325576.9681482894 363254.31860261253 359552.9194492351 387746.2206068348 393262.131199728 367581.3790439841 1.0718911476964268 0.9603622517342429 0.9565007944417828 0.8628304403231308 0.885727587711486 0.988228292595709 0.9781586879737225 1.0548581694080803 1.0698641270200768 1.0 18.48770415879679 1.9993073013921372 2.0946969752711353 1.0468851324338309 0.9460893672012822 0.3216531905064556 0.05590144054041095 0.3657232422836514 2.9931529426020096 0.03342438747891592 0.017588199186839907 99.84062738440775 -1.9993073013921372 -0.10079576523254863 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 5 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGK 35 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK;GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK;GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK;GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK;GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK 219.92 8.4014e-37 549121000.0 471625.0 402930.0 409004.0 356296.0 387789.0 548579.0 489034.0 499136.0 712706.0 522378.0 True False 469085.823402464 416341.2814736716 466588.2080735015 401403.0370681477 437171.63054451917 510657.0249460632 465377.557128702 536384.0628812514 537069.1560711167 489039.38880969334 0.9591984493196024 0.8513450879427797 0.9540912628922645 0.8207989913555842 0.8939395078351078 1.0442042842172417 0.9516156934953982 1.0968115762347765 1.0982124719612592 1.0 18.899591143605882 2.739702060349059 22.777704470073886 1.0412213758866113 0.8924641630405504 0.6185168744676233 0.05581733594399638 19.051538803076877 380179.3387941878 0.01732201327400358 0.01744130124070209 549.1640008513352 -2.739702060349059 -0.14875721284606092 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(ph)PGKQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGKQK 37 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 GGPEGVAAQAVASAAS(0.001)AGPADAEMEEIFDDAS(0.999)PGKQK 82.05799999999998 0.00076438 25754000.0 33724.0 32103.0 30914.0 31547.0 28986.0 48785.0 40735.0 43027.0 86368.0 43031.0 True False 33542.433731088655 33171.528948326704 35266.42249069504 35540.8469654132 32677.195286517748 45412.60777753744 38764.49242718841 46237.89322667894 65083.76367190709 40284.7247393074 0.8326340554180324 0.8234269729528506 0.8754291538272371 0.8822412762010159 0.8111559778049896 1.12729100351098 0.9622628099867432 1.1477773157417854 1.615594101562826 1.0 15.29794527734869 2.0563682676883195 1.1239282871263943 1.282828351406792 0.8521409921475303 0.5162198588067475 0.1619364525716321 0.3829484691031002 0.8978321928484951 0.11637491472440681 0.05647588340470542 113.8592366124967 -2.0563682676883195 -0.4306873592592617 GGPEVQQVPAGERPLWFICSGMGTQWR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGPEVQQVPAGERPLWFICSGMGTQWR 27 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 176.68 5.4643e-14 6752450000.0 2118469.0 1963026.0 1990990.0 1936935.0 1899164.0 1893225.0 1826500.0 1582695.0 2429641.0 2188071.0 False True 2107063.3982880344 2028364.133735722 2271304.0860046903 2182150.7724015806 2141011.278173056 1762350.8119222773 1738145.2170924165 1700803.737662367 1830888.5310714142 2048426.435478168 1.0286253691098155 0.9902059935397373 1.1088043225113404 1.0652814934465522 1.0451980315677167 0.8603437162296181 0.8485270386030133 0.830297690073183 0.8938024326189807 1.0 20.96608465200007 2.741128271158663 23.733317306657785 0.8693026257305054 1.048813206799621 0.697669627943585 0.052384042641384555 55.386572992075074 511949.51601543365 0.015949469331329458 0.016207973877041072 550.9704043817178 -2.741128271158663 0.17951058106911555 GGPGAAPGGASPASSSSAAS(ph)SPSSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 GGPGAAPGGASPASSSSAAS(0.939)S(0.061)PSSGR;GGPGAAPGGASPAS(0.005)S(0.003)S(0.004)S(0.008)AAS(0.516)S(0.356)PS(0.054)S(0.054)GR 337.72 3.1509999999999986e-95 377440000.0 148164.0 185942.0 182101.0 181277.0 185775.0 192141.0 196530.0 169722.0 217825.0 202663.0 True False 147366.3014865678 192130.96706568738 207739.23794973345 204226.64961325025 209432.34507530672 178858.7449212632 187023.09308249273 182387.5174708533 164144.94745545986 189728.87383147643 0.7767204775455712 1.0126606624795789 1.094926848795057 1.076413123047635 1.1038506730469058 0.9427070393098498 0.9857386980993359 0.9613060668501939 0.8651553352984055 1.0 17.53357972600438 2.62355038847765 20.043603168301463 0.9525823227570783 1.02124519331776 0.09656920010490389 0.09291321076462561 11.594478801357166 1988.0024612911443 0.030909691356050203 0.029141859971151887 420.29128862309193 -2.62355038847765 0.06866287056068165 GGPGGGFRPFVPHIPFDFYLCEMAFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGPGGGFRPFVPHIPFDFYLCEMAFPR 27 1 Q12905;A0A0A0MRL0 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 124.45 4.7663e-05 145350000.0 89973.0 95700.0 89304.0 88469.0 100750.0 102280.0 93112.0 82183.0 113330.0 87912.0 False True 89488.59536494008 98885.31664812837 101877.22695571679 99669.16632906914 113579.91530796455 95209.6243412224 88607.81683761787 88315.91277681806 85401.34004419728 82301.38089475015 1.0873279936746283 1.2015025212588635 1.2378556209889224 1.21102665891511 1.3800487193916522 1.1568411526773743 1.0766261255194807 1.073079355615667 1.0376659433383197 1.0 16.32862901667624 2.3304193096454666 3.446117686529088 1.053893794297988 1.2257026720755442 0.5854435755674205 0.06972365474609653 0.17810145776422723 4.179425420326277 0.026743618037251626 0.0213400083125012 214.0027280451491 -2.3304193096454666 0.17180887777755616 GGPGKLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGPGKLSPR 9 1 Q12888;Q12888-2;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR 77.541 0.036972000000000005 6719990000.0 5797190.0 5747530.0 5601530.0 5010380.0 4024550.0 5203940.0 6253950.0 4980310.0 8759320.0 5808510.0 True False 5765978.573168359 5938833.06159474 6390176.734628416 5644693.594274168 4537052.58712327 4844203.876557107 5951422.546090948 5351966.021701755 6600702.954874591 5437805.918884395 1.060350196233427 1.0921377390411047 1.1751388022946223 1.0380461676043446 0.8343535342751033 0.8908379498676426 1.0944529162806027 0.9842142403640161 1.213854089928383 1.0 22.374593230274986 3.4860587270457586 24.991487489796558 0.9966079569440798 1.1073502566345856 0.18034602349411966 0.10073933387488539 713.2786212794549 1994509.9677889606 0.028395340627563426 0.04049349779832904 3062.3775126917217 -3.4860587270457586 0.11074229969050586 GGPNYQEGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGPNYQEGLR 10 0 P53396;P53396-2;P53396-3;K7EIE7 P53396 ACLY ATP-citrate synthase 0 75.825 0.088019 113270000.0 81585.0 84593.0 77726.0 88087.0 83197.0 97642.0 86961.0 84039.0 121900.0 93886.0 False True 81145.75542494572 87408.62686745154 88669.14519349686 99238.8051682365 93791.64480274678 90892.2383645447 82754.36420671974 90310.41692139527 91859.3783763137 87894.11510015136 0.9232217120848626 0.994476442112801 1.0088177700231966 1.1290722371475994 1.0670981179556271 1.034110625733897 0.941523378583707 1.0274910535078559 1.045114092924698 1.0 16.423478953336254 4.627073310115004 2.089029074771331 1.0323078328252349 0.9081753002899093 0.3523846601768945 0.045250395224247966 0.6541812745270905 3.798480081412505 0.012557770089658896 0.14010235654394698 42371.44841951405 -4.627073310115004 -0.12413253253532552 GGPPCKPPAPEDEDEAWR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGPPCKPPAPEDEDEAWR 18 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 0 ;; 198.96 1.5285e-15 1231440000.0 624147.0 674241.0 594030.0 611032.0 581401.0 704303.0 608131.0 637002.0 837801.0 709333.0 False True 620786.6619012501 696682.704097708 677664.260598679 688388.588549477 655438.9711162868 655616.1913609295 578713.3802439794 684538.3238706138 631336.1695082367 664062.7606494648 0.934831312170118 1.049121777911986 1.0204822507076163 1.0366318205770508 0.9870135926237699 0.9872804653580116 0.8714739246603556 1.030833777218773 0.9507176232722025 1.0 19.340960071730287 2.887161440441774 2.9034313975503565 0.9668223269594879 1.0134037299065566 0.1419692033023554 0.04805876278062513 0.48979498914863984 7.963067824379296 0.015149934007612815 0.016463860968377667 771.1900905540284 -2.887161440441774 0.046581402947068695 GGPPFAFVEFEDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGPPFAFVEFEDPR 14 0 J3KTL2;Q07955;Q07955-3;Q07955-2;J3QQV5;J3KSW7 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;; 107.83 0.0020028 1123800000.0 248823.0 300575.0 258586.0 264496.0 263575.0 275020.0 264006.0 247958.0 270715.0 262769.0 False True 247483.36461483422 310579.4571735753 294992.6611301958 297981.16648061405 297139.7139185788 256008.51472744372 251235.021179141 266461.8850652114 204000.91564514994 245998.85745214098 1.0060346099899349 1.2625239823888144 1.199162728581317 1.2113111807382528 1.2078906259814124 1.0406898527049058 1.0212853172621694 1.0831834254232318 0.82927586639234 1.0 17.90829208938361 2.6319483305012494 3.7529211578734247 1.0039137015310156 1.1853069230665534 0.520557596327357 0.08771412120113736 0.20335649158742036 5.189422443236063 0.02892700070575944 0.02716375084089765 428.49753754822865 -2.6319483305012494 0.18139322153553783 GGPPFAFVEFEDPRDAEDAVYGR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGPPFAFVEFEDPRDAEDAVYGR 23 1 J3KTL2;Q07955;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;; 178.56 4.6708e-17 4198060000.0 464576.0 635872.0 619710.0 793482.0 728492.0 652563.0 634159.0 590342.0 844830.0 744653.0 False True 462074.7744352459 657036.6151272581 706959.7813841185 893936.7398424576 821261.1380896253 607452.855778071 603482.3064473647 634396.3177359358 636632.9666420114 697128.6080104925 0.6628257241571862 0.9424898183454967 1.0141023811971837 1.2823125167587484 1.1780625965607545 0.8713641196158287 0.865668543096544 0.9100133181256383 0.9132216915597149 1.0 19.41106530703448 -0.4035058309133964 7.6231962631448535 0.9999938376957481 0.9661680477449088 0.004129402471902854 0.16271636512955173 0.0 0.0 0.16754882900743498 0.039491637723674214 0.394906397231274 0.4035058309133964 -0.03382578995083929 GGPPS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGPPSPTK 8 0 Q5TCQ9;Q5TCQ9-1;Q5TCQ9-3;Q5TCQ9-2 Q5TCQ9 MAGI3 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 1 GGPPS(0.966)PT(0.034)K 87.12299999999998 0.016308 305420000.0 420760.0 338770.0 326610.0 319870.0 314420.0 382970.0 420860.0 368230.0 534660.0 435050.0 True False 418494.6749108312 350045.7546592101 372593.84905498836 360365.50920299 354459.523286653 356496.1853144102 400501.3939586722 395709.19243405224 402900.20707694755 407284.73653495585 1.027523590673311 0.8594620010493982 0.9148239932212876 0.8847999369405808 0.8702990598230556 0.8752996450281002 0.9833449624604298 0.9715787431677786 0.9892347317129769 1.0 18.635678223131336 2.227423182559197 24.71763386197858 0.9823639318432645 0.9011822588259174 0.4328511817453905 0.04500710590934857 174.38739702167786 387019.8373740014 0.016137382754199663 0.012030825719692327 168.8197226955821 -2.227423182559197 -0.08118167301734713 GGPTSHPSPVPPPAS(ph)SPSPLSGSALCGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGPTSHPSPVPPPASSPSPLSGSALCGGK 29 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 GGPTSHPSPVPPPAS(0.705)S(0.294)PS(0.001)PLSGSALCGGK 116.45 0.00010318 374440000.0 136390.0 193810.0 196040.0 218190.0 217960.0 227970.0 232310.0 196330.0 213960.0 254270.0 True False 135655.69139435343 200260.84868938106 223640.72798977367 245812.8316284751 245715.91404986553 212210.97048365697 221072.27778961923 210981.14154353976 161232.42491711315 238042.27090850082 0.5698806807573141 0.8412827180864769 0.9395000607927201 1.032643616994232 1.032236472589838 0.8914843975977151 0.9287101696093104 0.8863179667137234 0.6773268642655825 1.0 17.860858260638338 4.714457567411738 2.668958096016948 0.9238055312545238 0.5101744392583996 0.5472554375817724 0.09650603590763884 0.33347752600528136 3.2713236357471134 0.02460371177652649 0.2987719685894657 51815.24636313411 -4.714457567411738 -0.41363109199612424 GGQGDPAVPAQQPADPST(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 3 GGQGDPAVPAQQPADPSTPER 21 0 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;O15231-2;H7BZT5;O15231-9;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 1 GGQGDPAVPAQQPADPS(0.032)T(0.968)PER;GGQGDPAVPAQQPADPST(1)PER;GGQGDPAVPAQQPADPS(0.182)T(0.818)PER 257.76 1.9199e-35 1813170000.0 1195530.0 1276850.0 1195230.0 1293620.0 1236700.0 1330180.0 1273990.0 1092350.0 1293290.0 1338100.0 True False 1189093.399315871 1319349.1803778745 1363507.9948746013 1457392.1593621525 1394186.4145048147 1238227.7875069128 1212362.2365855854 1173866.7038409084 974576.0086981353 1252701.3123949526 0.9492234003032423 1.053203319357511 1.0884541920594024 1.1633995629619527 1.112944004057413 0.9884461485392964 0.9677983287714086 0.9370683116765274 0.7779795543080505 1.0 20.256611036262417 2.207535210253052 1.6151780705467755 0.8996929526598398 1.0758828719322615 0.4897991003139738 0.07387374041663834 0.32144452085404945 1.6480871410381333 0.042221750266602735 0.024978915702033977 161.2631765519358 -2.207535210253052 0.17618991927242167 GGQLHGARPLGTGER ddPTM_BT-474_Trastuzumab_2h_R1 1 GGQLHGARPLGTGER 15 1 Q6N063;F5H145;Q6N063-4;Q6N063-2 Q6N063 OGFOD2 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 0 73.38600000000002 0.022788 56327000.0 23185.0 35187.0 35163.0 31287.0 32434.0 29675.0 26491.0 26184.0 33259.0 30900.0 False True 23060.174536095667 36358.178024009314 40113.64475772498 35247.93099207164 36564.27764862059 27623.637097436167 25209.52912455256 28137.983039657905 25062.76509776718 28927.93554517905 0.7971593582985127 1.2568535340942621 1.3866749908605236 1.2184737807169872 1.263978122168976 0.9549121489950135 0.8714596686369422 0.9726923995565666 0.8663862327342604 1.0 14.820175747925623 2.6890896966025313 6.6779837578931875 0.9283965434809448 1.2016194831112683 0.41631747442363576 0.14825383872742773 0.2210955423443209 24.169781103342753 0.0482578924633443 0.04573793323664859 488.75329312125166 -2.6890896966025313 0.2732229396303235 GGQQALLQHWSEYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGQQALLQHWSEYIK 15 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 111.43 0.0019455 0.0 437170.0 406420.0 405890.0 396780.0 390280.0 531960.0 448180.0 483530.0 639500.0 510320.0 False True 434816.3252941528 419947.4440139214 463035.78394087555 447012.3073172305 439979.844629205 495186.8572991457 426499.82118613675 519613.4639155889 481903.7938609733 477750.94069306727 0.9101318035363158 0.8790091410489093 0.9691991045986332 0.9356597114570939 0.9209397766772197 1.0364958289371118 0.8927241892342876 1.0876241565569547 1.0086925065220835 1.0 18.8658991883133 2.6831277587197615 0.6523441601401279 1.0301971394557656 0.9062651127708808 0.38429026480340744 0.050683860293965155 0.729093825929036 0.6586640834857828 0.038033972046588274 0.03786603712094397 482.0895956301774 -2.6831277587197615 -0.12393202668488479 GGQS(ph)DDDEDEGVPASYHTVSLQLLDLMHTLHTR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGQSDDDEDEGVPASYHTVSLQLLDLMHTLHTR 33 0 Q92538-3;Q92538-2 Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR 215.92 1.0932999999999999e-35 3760070000.0 248553.0 338410.0 286841.0 347802.0 344162.0 309202.0 359270.0 152992.0 356093.0 332917.0 True False 247214.81826483418 349673.77227683546 327225.7195333335 391833.69753905747 387988.9906920074 287827.5935232166 341890.7375553205 164409.03991763468 268338.6515517367 311669.9520354168 0.7931942641578158 1.1219361057850712 1.0499110273426326 1.2572071673259384 1.244871339563456 0.9235012603669576 1.0969640651032972 0.5275100754626226 0.8609705549068903 1.0 18.249659546502738 1.7640287369622425 24.999999934426043 0.7505234362077073 1.0792379984245533 0.33937697506019404 0.17098300992889146 14.246702253202402 13994.213717423532 0.0771220291444005 0.04277067344655901 58.080284756822465 -1.7640287369622425 0.3287145622168459 GGQS(ph)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGQSDDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR 37 0 A0A669KBG8;A0A669KB10;Q92538 A0A669KBG8 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR 250.79 9.327499999999998e-51 962134000.0 110193.8 145348.0 175379.79 194189.93 187569.36 189998.0 165376.0 53636.4 195851.0 150745.0 True False 109600.52882448213 150185.8203152786 200071.74000353797 218774.35522725817 211455.20618530147 176863.8854671837 157376.1310823299 57639.0205281205 147586.14531894526 141124.3250407125 0.7766239363260999 1.0642093081540125 1.417698472221709 1.5502242803580792 1.498361151589561 1.2532487607374618 1.1151594952672332 0.408427253852179 1.0457881394746698 1.0 17.10660715543335 1.958385351514787 8.258919843168954 0.7534084039600746 1.2745729437298625 0.3484853241575703 0.26543597373741623 0.31846056401831907 58.47149814867666 0.11687363581830804 0.0744447459363515 90.86264010327733 -1.958385351514787 0.5211645397697879 GGQVSLTVHGTQQVHS(ph)PPEQSPVQANSSSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGQVSLTVHGTQQVHSPPEQSPVQANSSSSK 31 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 GGQVSLTVHGTQQVHS(1)PPEQSPVQANSSSSK;GGQVSLTVHGTQQVHS(1)PPEQSPVQANSSSSK;GGQVSLTVHGT(0.001)QQVHS(0.999)PPEQSPVQANSSSSK;GGQVSLTVHGT(0.002)QQVHS(0.998)PPEQSPVQANSSSSK 260.57 2.2686999999999997e-58 2281800000.0 390873.0 562660.0 636899.0 664078.0 667847.0 783733.0 750460.0 584196.0 770367.0 752924.0 True False 388768.58319807315 581387.7979648471 726568.8431746523 748150.2067105486 752893.3568107022 729555.3824190384 714157.3827643993 627791.6720071805 580520.3752389314 704871.7457093323 0.5515451364940787 0.8248135941096351 1.030781624596806 1.0613990577217192 1.068128154368061 1.0350186212739543 1.0131735129285435 0.8906466684594033 0.8235829833904569 1.0 19.42700125157697 4.6148395809762475 2.562759285278117 0.9888415123149207 0.5154808730431604 0.7683485965744017 0.0740194922683645 0.194385307286599 1.9321958106074553 0.020936037944950883 0.1746165530834419 41194.53272632766 -4.6148395809762475 -0.4733606392717603 GGREDMDISK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGREDMDISK 10 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 0 126.66 0.00034359 549460000.0 1647100.0 1714100.0 1712200.0 1528700.0 1392800.0 1793000.0 1814000.0 1593500.0 2600700.0 1940600.0 False True 1638232.1966100147 1771152.7823046686 1953262.87729081 1722233.2632588574 1570164.824227625 1669054.1302680038 1726249.8898470527 1712415.0616290437 1959792.3325945784 1816749.2465687525 0.9017382006372655 0.9749021697131838 1.0751417021253138 0.9479752181054127 0.8642716253732621 0.9187036314561866 0.9501861047182909 0.9425709491077197 1.0787357343320703 1.0 20.79292787734074 1.2521422840879042 24.77895568451379 1.0393678619121653 0.9483311969778414 0.3125086398982322 0.05480697488989621 230.6469131246584 420806.5816184716 0.039273731959587235 0.014172059601560065 17.870729619778288 -1.2521422840879042 -0.09103666493432394 GGRPGGFPDHPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGRPGGFPDHPHR 13 1 O00625 O00625 PIR Pirin 0 52.07100000000001 0.093297 30967000.0 97038.0 206600.0 189850.0 227830.0 213610.0 148860.0 174490.0 98993.0 107430.0 161310.0 False True 96515.55818993531 213476.55610766282 216579.22979421786 256673.2546400636 240811.96733433593 138569.65857874806 166049.25208346872 106380.36033626863 80955.3159882476 151015.05769556077 0.6391121498924043 1.4136110621367406 1.434156521204868 1.6996533892501287 1.5946222251545372 0.9175883563750176 1.0995542737083621 0.7044354514019815 0.5360744631932645 1.0 17.204332882130508 2.285294361194776 1.7058787765043506 0.7492664130339175 1.3697384330643039 0.39221559266226214 0.30636328971566407 0.3561229324967319 2.0845356337346037 0.1596112251057203 0.10392063916852064 192.88318164308535 -2.285294361194776 0.6204720200303864 GGRS(ph)PDEVTLTSIVPTR ddPTM_BT-474_Trastuzumab_2h_R1 5 GGRSPDEVTLTSIVPTR 17 1 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 GGRS(1)PDEVTLTSIVPTR;GGRS(0.998)PDEVT(0.002)LTSIVPTR;GGRS(1)PDEVTLTSIVPTR;GGRS(0.505)PDEVT(0.431)LT(0.056)S(0.008)IVPTR;GGRS(1)PDEVTLTSIVPTR 189.45 9.3219e-10 1717326000.0 612349.0 714599.0 668123.0 638985.0 707764.0 757453.0 689777.0 672560.0 841432.0 728715.0 True False 609052.1810223702 738383.9957307832 762188.910970778 719880.4354833916 797893.550154108 705092.056962572 656409.8513059715 722749.8423904799 634072.3582111446 682207.7848157005 0.8927663896226377 1.082344722774248 1.1172386594455008 1.0552216663400704 1.169575557349672 1.033544431265987 0.962184639220002 1.059427726386517 0.9294416925811543 1.0 19.379851692376878 2.478108498867329 24.983164748755613 0.9986595446974289 1.070468299953848 0.18259458689689456 0.0733330019117414 64.7048372826177 1637476.2915895062 0.024904060757724108 0.021093864263324425 300.68273980999425 -2.478108498867329 0.07180875525641905 GGRS(ph)PRPGSSAPEHS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGRSPRPGSSAPEHSPR 17 2 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 2 GGRS(0.987)PRPGS(0.007)S(0.007)APEHS(0.999)PR 83.70100000000002 0.0029311 63588000.0 25731.0 36429.0 31769.0 40477.0 41498.0 34860.0 38634.0 34347.0 43302.0 37048.0 True False 25592.467154982867 37641.51724320445 36241.79905890185 45601.38404979968 46782.52432208358 32450.210251613298 36765.12582378784 36910.14755053204 32630.80231707251 34683.564921611425 0.7378845632744092 1.0852839760929511 1.0449271619227205 1.3147836490529072 1.3488384030827596 0.935607695603213 1.060015771356865 1.0641970522336135 0.9408145440303389 1.0 15.081964571950216 -3.0680786597687946 10.130303770638665 1.0036578780747836 1.0678162007766696 0.0 0.16968553476227557 0.0 0.0 0.0 0.037898777199815464 0.0008549118565324257 3.0680786597687946 0.06415832270188604 GGS(ph)DDSSKDPIDVNYEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GGSDDSSKDPIDVNYEK 17 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 1 GGS(0.998)DDS(0.002)SKDPIDVNYEK;GGS(0.999)DDS(0.001)SKDPIDVNYEK;GGS(0.976)DDS(0.016)S(0.008)KDPIDVNYEK 221.92 2.1370000000000002e-15 839090000.0 1870780.0 1328200.0 1214780.0 1168220.0 1210130.0 1720010.0 1621610.0 1714540.0 2818210.0 1767190.0 True False 1860707.9283431992 1372408.334086146 1385810.4649429575 1316116.5322197063 1364232.8824975402 1601109.7571680273 1543166.529148225 1842487.6810577114 2123699.907579256 1654406.4212325206 1.124698202607909 0.8295472723466051 0.8376481420511769 0.7955218955443906 0.8246056500924343 0.9677850234498077 0.9327614480597683 1.1136850397891176 1.2836627568195216 1.0 20.6578822596196 1.7748347499218995 2.4364049547473585 1.1593200833625057 0.8848006269010952 0.47710020840452516 0.11063214086993285 0.21101287819446574 2.4857613666011633 0.0671227451450193 0.03056109005151736 59.54355357889175 -1.7748347499218995 -0.2745194564614105 GGS(ph)GYHS(ph)RS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 GGS(0.998)GY(0.002)HS(1)RS(1)PAR 70.80199999999998 0.07789700000000001 105170000.0 201170.0 255590.0 158620.0 248930.0 237780.0 231010.0 227150.0 196160.0 247780.0 213080.0 True False 200086.92307208816 264097.1586425823 180952.31725024403 280444.5124766318 268059.8735675223 215040.8224390473 216161.88670273355 210798.4552802972 186717.93908189528 199481.05197303387 1.003037236334287 1.3239210242298267 0.9071153147653613 1.4058704308143646 1.3437861436772403 1.0780012452917926 1.083621148799409 1.0567342271124238 0.9360184199707152 1.0 17.605892190695034 2.0103273414322422 1.477777020447024 0.9897470627867937 1.193401460034047 0.24372646839559564 0.14741411948787966 0.590679642670047 2.4074973170082234 0.09757725789057946 0.04700400492987804 102.40645711901536 -2.0103273414322422 0.20365439724725332 GGS(ph)LPKVEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSLPKVEAK 10 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 GGS(1)LPKVEAK 81.494 0.020536 0.0 447600.0 351770.0 304120.0 312370.0 349500.0 459880.0 472620.0 418640.0 836340.0 464500.0 True False 445190.171333035 363478.45180054434 346937.45254157303 351916.00997198257 394006.75335120235 428089.57804107654 449757.5650162704 449881.04261084605 630235.2133818389 434855.2123215421 1.0237664370085806 0.8358608601241276 0.7978229137220031 0.8092716840008064 0.9060642305463837 0.984441639219762 1.0342696885594858 1.0345536396104953 1.449298974748929 1.0 18.73017560129126 2.025460222671499 1.1845941322112343 1.1896095141569667 0.8662455247566483 0.4958993525174066 0.12631415568118734 0.38365690837030975 0.9979449459432581 0.09099994886767201 0.04312763345627992 106.0376813287273 -2.025460222671499 -0.3233639894003184 GGS(ph)PAPLPAKVDEATSGLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSPAPLPAKVDEATSGLIR 20 1 A0A087WWH3;Q9NZM4-2;Q9NZM4 A0A087WWH3 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein 1 GGS(1)PAPLPAKVDEATSGLIR 121.94 1.8995e-05 113210000.0 202320.0 273170.0 255880.0 246500.0 257780.0 253330.0 260750.0 237780.0 351500.0 308870.0 True False 201230.73159986536 282262.29831524787 291905.67985116935 277706.8747257853 290606.7550182343 235817.8933746758 248136.52633826877 255524.35102237502 264877.53485868993 289157.6521630889 0.6959204783083812 0.9761536525274042 1.0095035620448687 0.9603995351613754 1.005011462931398 0.8155339885028229 0.8581357763906464 0.8836852461309092 0.9160315588303897 1.0 18.141496756020995 2.739770662507934 24.996315434044902 0.8842542521227463 0.9381679311232709 0.022655097046824668 0.0948628854957366 325.57400576094886 6725545.195933032 0.02934746742098849 0.029578952561260224 549.2507549163407 -2.739770662507934 0.05391367900052457 GGS(ph)PDLWK ddPTM_BT-474_Trastuzumab_2h_R1 5 GGSPDLWK 8 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 GGS(1)PDLWK;GGS(1)PDLWK;GGS(1)PDLWK;GGS(1)PDLWK;GGS(1)PDLWK 142.43 0.00064789 21894260000.0 12251990.0 12349600.0 10360450.0 10598330.0 11047770.0 13444930.0 13119310.0 12145120.0 17083560.0 13147800.0 True False 12186026.647164071 12760648.970509157 11819111.305354254 11940077.491328752 12454638.024236953 12515513.635060921 12484678.854668887 13051450.526069757 12873545.54597588 12308696.147602094 0.9900339159430854 1.036718172053919 0.9602244757383813 0.9700521767819287 1.0118568104114984 1.0168025504065366 1.014297428822392 1.0603438714840938 1.0458902707159463 1.0 23.553174610354393 2.4514735090309636 1.5110804444518882 1.0394173257595791 0.9921311425829599 0.3295837861510278 0.024798476562677252 0.41147438303972805 1.9029964912832633 0.012373350742160527 0.009166984078370206 282.7961606603231 -2.4514735090309636 -0.047286183176619256 GGS(ph)PLAAPQGGSPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGSPLAAPQGGSPTK 15 0 E7EPC8;Q9UQB3-2;Q9UQB3 E7EPC8 CTNND2 Catenin delta-2 1 GGS(1)PLAAPQGGSPTK;GGS(1)PLAAPQGGSPTK 131.82 3.1084e-05 242750000.0 292970.0 362180.0 368240.0 353340.0 349700.0 407610.0 408230.0 386850.0 436660.0 421360.0 True False 291392.6820720273 374234.94235756673 420084.9912005415 398072.8077712334 394232.2221657097 379432.88011073123 388482.35530995805 415718.71138449694 329050.9939442258 394468.44405555475 0.7386970655401505 0.948706919392674 1.0649394077803067 1.009137267555858 0.9994011640388356 0.9618839880061332 0.9848249236769021 1.0538706394622264 0.8341630335781284 1.0 18.589550369287842 4.71249199855183 3.642662265287389 0.9941778399640494 0.7168721224390998 0.6060585763747202 0.05985608165094476 0.15142727843913287 3.7011250239654934 0.013799798624120993 0.10925388515698845 51581.26616444009 -4.71249199855183 -0.2773057175249496 GGS(ph)PQMDDIK ddPTM_BT-474_Trastuzumab_2h_R1 11 GGSPQMDDIK 10 0 Q13144;A0A3B3IUB1;A0A3B3ITG6 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 1 GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK 145.6 3.1618e-05 21067510000.0 28876650.0 28086210.0 23488280.0 22930500.0 23714640.0 29012970.0 28496220.0 26801000.0 37068550.0 28740870.0 True False 28721181.324897423 29021042.521377556 26795225.66021037 25833498.94888288 26734558.83631633 27007371.673085175 27117748.972468257 28801026.712720424 27933502.545621864 26906603.07030324 1.0674398864045729 1.0785844071639061 0.995860591922293 0.9601174433421981 0.9936058731183055 1.0037451254072705 1.0078473637721315 1.0704073880105682 1.0381653333434726 1.0 24.681456927989164 -0.21971217419912747 7.528248084458192 1.0000000006343868 1.0240839774486088 0.03640789073465478 0.036998193167622186 0.0 0.0 0.039723992149979216 0.009363034741683832 0.6029590608222165 0.21971217419912747 0.02408397681422203 GGS(ph)PYNQFDIIPGDTLGGHTGPAGDSWLPAK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAK 31 0 Q9UPQ9-1;Q9UPQ9;H0Y720;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK 276.3 6.787099999999997e-72 1667030000.0 765660.0 771660.0 766930.0 786900.0 819580.0 962600.0 940280.0 849160.0 985760.0 923840.0 True False 761537.7716328225 797344.2366216789 874907.077724938 886521.4593173258 923948.6549687516 896057.7277166655 894795.0641815816 912528.6311471097 742832.6565072597 864879.7402607832 0.8805129039133226 0.921913416981255 1.0115939095314352 1.0250228072749363 1.068297257940344 1.0360489279659635 1.0345889983638397 1.0550930825041167 0.8588854865339738 1.0 19.722140017369867 4.3229433778591835 2.8468906975513737 1.0205906774174713 0.8853942382182227 0.38947626778016853 0.05529297941860188 0.24119300045692865 3.7691729949693396 0.013713099452343747 0.049160783013308784 21035.041726987056 -4.3229433778591835 -0.13519643919924862 GGS(ph)TVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGSTVPK 7 0 Q92504;A2AAT0 Q92504 SLC39A7 Zinc transporter SLC39A7 1 GGS(0.993)T(0.007)VPK;GGS(0.991)T(0.009)VPK 106.36 0.008098399999999999 1848780000.0 6983200.0 4758500.0 4003000.0 4090100.0 4631900.0 7320500.0 5646800.0 6255100.0 8675600.0 5464400.0 True False 6945603.227106453 4916883.795926002 4566587.605300259 4607906.240632604 5221745.009577779 6814451.065603413 5373642.711129193 6721887.324754205 6537614.6270840615 5115657.313691789 1.3577147180122697 0.9611440904702939 0.8926687862922378 0.9007456829251999 1.0207378425450921 1.3320773163137591 1.0504305471648618 1.313983113521585 1.2779617996667756 1.0 22.28648819390413 2.829019349393153 8.20835405282122 1.2100083831655828 1.0076213973002333 0.21411578502431083 0.15790926043202505 0.4235694201842505 34.915249267070934 0.04750036153499266 0.05041917904997933 674.5580810356896 -2.829019349393153 -0.20238698586534953 GGS(ph)WIQEINVAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGSWIQEINVAEK 13 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 1 GGS(1)WIQEINVAEK;GGS(1)WIQEINVAEK 212.95 1.0262e-08 107098000.0 95444.0 98343.0 87390.0 86600.0 86714.0 109551.0 92765.0 97063.0 126516.0 103996.0 True False 94930.14010882538 101616.28730540117 99693.75239250313 97563.55112070197 97756.51390585459 101977.99722531521 88277.60255328674 104306.33393592713 95337.82702754482 97358.88624454493 0.9750536778982962 1.0437289417029951 1.0239820548284981 1.0021021694480252 1.0040841434885657 1.0474441641533168 0.9067236279958264 1.071359153328148 0.9792411427969333 1.0 16.57102504371179 3.725275343993825 22.620148120188116 1.0047259548190184 1.0172022966239418 0.012536695470207748 0.04367439229454647 1220.5374340023004 2078142.9884993196 0.011021220611718207 0.017200246794632765 5312.2113326799235 -3.725275343993825 0.012476341804923408 GGSDDSSKDPIDVNYEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GGSDDSSKDPIDVNYEK 17 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;; 170.0 1.7360999999999996e-09 11466300000.0 12575400.0 10662600.0 9565400.0 8790200.0 8833400.0 13288200.0 12833800.0 12374400.0 19507600.0 13195500.0 False True 12507695.443658294 11017498.19532219 10912125.176052755 9903038.418720478 9958281.130336227 12369618.011058176 12212980.064123014 13297840.563929988 14700213.368447727 12353351.89276407 1.0124940625211714 0.8918630579750302 0.8833331447835217 0.801647885099197 0.8061197654516143 1.0013167372252736 0.988636944056999 1.076456064666882 1.1899777077554412 1.0 23.558399212333587 2.196425691599568 1.625773701421996 1.0935438076386486 0.8792574641869144 0.5816404200284141 0.07440833518985902 0.2650185355339929 1.3732389213125333 0.04268301612889891 0.025024909969415553 157.1902814656336 -2.196425691599568 -0.21428634345173414 GGSDGYGSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGSDGYGSGR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;; 193.1 1.4184999999999996e-06 7105483000.0 2486163.0 3026689.0 2927507.0 3098357.0 3081222.0 2367372.0 2933377.0 2619794.0 3045112.0 2895161.0 False True 2472777.774646674 3127430.5136928614 3339674.539253001 3490608.678518297 3473597.357866381 2203721.14583426 2791478.347921655 2815296.3313243818 2294684.950010281 2710389.3463079627 0.9123330483921218 1.153867623466342 1.232175201618999 1.287862455360199 1.2815861169901825 0.8130644214773514 1.029917842513715 1.038705503753297 0.8466255791390467 1.0 21.370068678335496 2.7466190356845073 24.999591469919302 0.9625878073126002 1.1820765894816516 0.4695000567901335 0.12028774383797322 596.5827189783325 1850775.9421202561 0.03845911947385449 0.04013699717135562 557.9805179483969 -2.7466190356845073 0.21948878216905143 GGSFWSSIPAS(ph)PASRPGSFTFPGDSDSLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 O75962-5;O75962;E7EPJ7;O75962-4 O75962-5 TRIO Triple functional domain protein 1 GGSFWSSIPAS(0.997)PAS(0.003)RPGSFTFPGDSDSLQR;GGSFWSS(0.005)IPAS(0.991)PAS(0.004)RPGSFTFPGDSDSLQR;GGSFWSS(0.001)IPAS(0.981)PAS(0.018)RPGSFTFPGDSDSLQR 187.19 2.3834999999999997e-18 970304000.0 393621.0 418249.0 460001.0 445116.0 436846.0 457833.0 413383.0 341030.0 442039.0 412650.0 True False 391501.7882714041 432170.16512814007 524765.1423996317 501467.6399612283 492475.7487108999 426184.0823329573 393386.08501358563 366479.39031525154 333104.41146913345 386314.3237125608 1.013428092722503 1.1187008573093928 1.3583890376016343 1.2980819223631685 1.2748058212755504 1.1032054888289926 1.0183057185999829 0.9486559721454503 0.8622626473383925 1.0 18.559415645058614 2.272332125407745 1.968411843474932 0.9367411141048362 1.2191249819459158 0.6096740432548899 0.09689017479897669 0.23425004197246838 1.8424117997829064 0.04989923279978404 0.033602776058496174 187.21132861071567 -2.272332125407745 0.2823838678410796 GGSGS(ph)HNWGTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSGSHNWGTVK 12 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 GGS(0.464)GS(0.536)HNWGTVK 61.732 0.045684 0.0 231420.0 219130.0 216970.0 233160.0 224010.0 238090.0 248280.0 222420.0 321750.0 254150.0 True False 230174.060433179 226423.60958311797 247517.49006295225 262678.03209356655 252536.34568870615 221631.39870357473 236269.74787829482 239018.1098258749 242459.02372911348 237929.92941123797 0.9674027181143162 0.9516398804614762 1.040295731921742 1.1040142479912813 1.0613895709279284 0.9314986107548795 0.9930223930337335 1.004573533129395 1.0190354123547334 1.0 17.860177235469692 4.24681077354202 24.976216620411204 1.0186452788966267 0.9595212742005457 0.23552929179170345 0.04301720717971499 286.37052842101446 866926.3701897184 0.011591640626685796 0.030653577697120845 17652.68507920428 -4.24681077354202 -0.059124004696081034 GGSGSHNWGTVKDELT(ph)ESPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSGSHNWGTVKDELTESPK 20 1 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 GGSGSHNWGTVKDELT(0.5)ES(0.5)PK 88.541 0.0032345 313670000.0 146120.0 142670.0 122430.0 142660.0 126820.0 163510.0 148180.0 131580.0 168660.0 144020.0 True False 145333.3061554582 147418.68470416364 139667.0798193632 160720.74137274077 142969.7752789684 152206.93856113855 141011.96729742922 141399.16774970174 127096.00292821233 134828.52029827458 1.0779121942000431 1.0933790890683694 1.0358867657257123 1.1920381608964192 1.06038229124434 1.1288927463152347 1.0458615653830161 1.048733364698294 0.9426492454789537 1.0 17.040766176748562 1.5740314600133558 1.8253041164510664 0.973807579346213 1.0958132649138972 0.5261384026468467 0.0445207935929677 0.2386825595305726 1.617833756275828 0.033970022373862145 0.011864997360387892 37.50001660328022 -1.5740314600133558 0.12200568556768421 GGSGSHNWGTVKDELTES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSGSHNWGTVKDELTESPK 20 1 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 GGSGSHNWGTVKDELT(0.288)ES(0.712)PK 175.71 9.2387e-13 314110000.0 218650.0 215290.0 215300.0 223100.0 199950.0 264840.0 247850.0 198280.0 320950.0 252560.0 True False 217472.8126942985 222455.79750444667 245612.36857885224 251344.4371250418 225412.44730349915 246532.23416630132 235860.5486210545 213076.66044543864 241856.17300966303 236441.40457250515 0.919774660819231 0.9408495855734532 1.0387874705063969 1.0630305532970499 0.9533543742520615 1.0426779294939512 0.9975433408014943 0.901181672603786 1.0229011007904811 1.0 17.85112317044687 4.403380152971235 7.294701812825933 0.9954700274744892 0.9249187139916393 0.2873698273373937 0.04488228338661559 0.2884125474644808 23.438734875172926 0.011992205228319598 0.03336652924032975 25315.129476769253 -4.403380152971235 -0.07055131348284993 GGSGYHS(ph)RS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GGSGYHS(0.999)RS(1)PAR;GGSGYHS(0.999)RS(1)PAR;GGS(0.037)GY(0.007)HS(0.957)RS(0.999)PAR;GGS(0.069)GY(0.013)HS(0.939)RS(0.98)PAR 86.772 0.006215600000000001 2302130000.0 1169600.0 1679660.0 1546090.0 1752080.0 1806410.0 1610970.0 1732910.0 1478500.0 1542000.0 1709770.0 True False 1163303.0035547763 1735566.4677240867 1763766.0331448107 1973893.1483551902 2036445.6060690884 1499607.435715475 1649082.5229409384 1588833.177670877 1161994.7617413935 1600651.014792257 0.7267686665014593 1.0842878626790113 1.1019054227593288 1.2331814556162795 1.2722608409012828 0.9368734482763589 1.0302573813411584 0.9926168558841579 0.7259513479221483 1.0 20.61022736492937 1.4968992576681104 3.654952963387495 0.8597566940575929 1.067424499712308 0.18233411085394324 0.15652073230680344 0.3151746867746031 8.740350821386894 0.10839973496596132 0.041330231975575296 31.397802814972366 -1.4968992576681104 0.207667805654715 GGSGYVNQLSAGYESVDS(ph)PTGSENSLTHQSNDTDSSHDPQEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSHDPQEEK 43 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 GGSGYVNQLSAGYESVDS(0.299)PT(0.299)GS(0.299)ENS(0.069)LT(0.016)HQS(0.005)NDT(0.005)DS(0.005)S(0.005)HDPQEEK 69.813 0.0030313 68206000.0 15280.0 23366.0 21159.0 17727.0 15469.0 14444.0 14360.0 8613.0 7300.0 15137.0 True False 15197.734177767597 24143.723184954717 24138.00328267507 19971.236382409745 17438.885458053646 13445.520277518723 13665.351939472821 9255.745795927802 5501.012814988432 14170.9437005623 1.0724574522982937 1.7037484373039107 1.703344801356968 1.409308850871893 1.2306086190548957 0.9488090956839527 0.9643219413066035 0.6531495708052623 0.38818958929108954 1.0 13.790648215913167 2.656501797872678 1.1379979013268655 0.6741710305100377 1.5184674449158164 0.6830878526780162 0.22511619435491115 0.2576186718265393 0.6887779167550936 0.11650702810756264 0.09970272865324979 453.42117482762626 -2.656501797872678 0.8442964144057787 GGSISVQVNSIKFDS(ph)E ddPTM_BT-474_Trastuzumab_2h_R1 7 GGSISVQVNSIKFDSE 16 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNS(0.011)IKFDS(0.989)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E 309.45 3.3763e-57 5676391000.0 5884060.0 5752460.0 5063660.0 5345630.0 5577010.0 6990530.0 6985620.0 6722000.0 9979680.0 7028730.0 True False 5852380.874740521 5943927.153664497 5776579.313878278 6022386.209900205 6287209.16597193 6507291.115037596 6647698.872940129 7223629.773624363 7520321.5848608 6580150.4338015 0.8893992521322146 0.903311742408077 0.8778795214475088 0.9152353385363163 0.9554810682861044 0.9889274083477432 1.0102654855414308 1.0977909770143524 1.142879887096463 1.0 22.649689136205442 2.497007044093022 1.0316910380395723 1.0889158439487017 0.8928441904594719 0.8036991000020124 0.03735344601337701 0.203585638192981 0.43817096844209763 0.022545124534976063 0.01625158185132146 314.05596321582004 -2.497007044093022 -0.19607165348922972 GGSPLAAPQGGS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGSPLAAPQGGSPTK 15 0 E7EPC8;Q9UQB3-2;Q9UQB3 E7EPC8 CTNND2 Catenin delta-2 1 GGSPLAAPQGGS(0.997)PT(0.003)K;GGSPLAAPQGGS(0.999)PT(0.001)K 171.71 1.1203e-06 262870000.0 503770.0 503290.0 488540.0 464860.0 453440.0 622050.0 599380.0 523740.0 734070.0 614830.0 True False 501057.75829410827 520041.70340476977 557322.1855341973 523711.2283368306 511182.896250556 579049.147648194 570385.6995460456 562824.1382978327 553168.2845340491 575591.0230175542 0.8705100292692146 0.9034916852567204 0.968260732442313 0.9098669148647557 0.8881008838022932 1.0060079544196336 0.9909565589744268 0.9778195207896212 0.9610439746506935 1.0 19.134684566256077 2.7373426707936988 24.998857212547655 0.9854704270469662 0.9112394474917915 0.6954153781681914 0.02612623821805173 69.5157839484403 1426827.9398896706 0.008633882542320285 0.008560646766302527 546.1886496157396 -2.7373426707936988 -0.07423097955517466 GGSREYDTGGGS(ph)SSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGSREYDTGGGSSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 GGS(0.285)REYDT(0.026)GGGS(0.54)S(0.072)S(0.072)S(0.004)R 182.04 5.8092e-09 153420000.0 101450.0 141990.0 125200.0 185480.0 162150.0 148670.0 168220.0 126140.0 184050.0 162730.0 True False 100903.80447215456 146716.05131523235 142827.0717420915 208961.7489823072 182798.8413616521 138392.792831536 160082.5559371949 135553.20732594124 138693.3436436467 152344.43207983754 0.6623399562070963 0.9630548968034777 0.9375273503086848 1.3716402111289425 1.1999049710320535 0.908420419060737 1.0507936112381326 0.8897811720148938 0.9103932565842848 1.0 17.216977247466808 -4.604789495869697 17.074461598313352 0.9999963752543097 0.9963876499421181 0.0 0.18107140080276984 0.0 0.0 0.0 0.04148483054649161 2.4843369807687513e-05 4.604789495869697 -0.003608725312191585 GGSSVEAPCPSDVT(ph)PEDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GGSSVEAPCPSDVTPEDDR 19 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 GGSSVEAPCPSDVT(1)PEDDR;GGSSVEAPCPSDVT(1)PEDDR 300.53 7.3917e-49 563370000.0 381760.0 396620.0 387360.0 413780.0 383430.0 452600.0 378780.0 371140.0 405710.0 405140.0 True False 379704.64657752356 409821.25693814654 441896.921006522 466164.50557418074 432257.53773233655 421312.8273057995 360456.9643198824 398836.3514107336 305728.20673547353 379283.618342195 1.0011100617452682 1.0805139930098433 1.1650830661709108 1.2290657519344814 1.1396683558907301 1.1108120860777202 0.9503625964532775 1.0515517468273514 0.8060675229575596 1.0 18.53291753590062 2.277405839952309 5.674960348227168 0.9659936897298332 1.1281268462130623 0.5114965936508497 0.08035702762089876 0.16528802170159781 13.303157445382176 0.029594827080084846 0.02407411292449382 189.41128043545984 -2.277405839952309 0.162133156483229 GGSSVEAPCPSDVT(ph)PEDDRSFQTVWATVFEHHVER ddPTM_BT-474_Trastuzumab_2h_R1 2 GGSSVEAPCPSDVTPEDDRSFQTVWATVFEHHVER 35 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 GGSSVEAPCPS(0.001)DVT(0.975)PEDDRS(0.012)FQT(0.012)VWATVFEHHVER;GGSSVEAPCPS(0.007)DVT(0.993)PEDDRSFQTVWATVFEHHVER 185.81 3.5994e-20 267379000.0 32276.0 38792.0 32775.0 44325.0 44668.0 33361.0 40320.0 21713.0 38554.0 32736.0 True False 32102.22960220073 40083.1682697408 37389.43511459307 49936.540455255345 50356.20503202149 31054.83259334684 38369.56756264238 23333.334316379947 29052.883297132088 30646.76045330037 1.0474917781642274 1.3079088189702681 1.2200126395599695 1.6294231336897356 1.6431167368816824 1.0133153434167468 1.2519942400147008 0.7613638104404332 0.947991985691374 1.0 14.903446959991852 2.1590921955232165 1.7721878776308269 0.8979319782247751 1.3572676873661302 0.43654693916734844 0.20507292473453975 0.32150065699088287 1.9717987173098823 0.11603821539575845 0.06739073967222343 144.24215278601838 -2.1590921955232165 0.45933570914135513 GGTLGGGTLGPPS(ph)PPGAPS(ph)PPEPGGEIELVFRPHPLLVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 2 GGTLGGGTLGPPS(1)PPGAPS(1)PPEPGGEIELVFRPHPLLVEK;GGTLGGGTLGPPS(1)PPGAPS(1)PPEPGGEIELVFRPHPLLVEK;GGT(0.003)LGGGT(0.011)LGPPS(0.987)PPGAPS(1)PPEPGGEIELVFRPHPLLVEK 203.97 3.7911999999999995e-31 2480430000.0 809917.0 878778.0 774310.0 766476.0 775468.0 885928.0 836255.0 838075.0 1084030.0 891370.0 True False 805556.4968622375 908027.5944974814 883326.117576828 863511.783011446 874219.2532410591 824685.8826101914 795802.1508456725 900616.4121586197 816885.331757796 834482.0034597487 0.9653371714697422 1.0881332260406023 1.0585322558360424 1.0347877838363684 1.0476190614256036 0.988260836292523 0.9536480685578477 1.0792520490851556 0.9789130602829094 1.0 19.67052141102368 2.7534817937411047 23.936235398270476 1.0071569034589847 1.0424823233018885 0.16381029312042172 0.042006517633325996 947.8810162505983 1520570.6405213794 0.01291185151521339 0.013632514800533884 566.867807098785 -2.7534817937411047 0.03532541984290383 GGTLGGGTLGPPS(ph)PPGAPSPPEPGGEIELVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 32 0 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 GGTLGGGTLGPPS(1)PPGAPSPPEPGGEIELVFR 131.79 4.7325e-08 46217000.0 31862.0 34156.0 31091.0 27503.0 32188.0 31759.0 28536.0 29561.0 29808.0 31898.0 True False 31690.458532201006 35292.861812261974 35468.34255218347 30984.876980053865 36286.951006776835 29563.575082644507 27155.60466189392 31766.991927716455 22462.217806736353 29862.24233074827 1.0612216651785145 1.1818557167062418 1.187732058408178 1.037593782706319 1.2151448844621167 0.9899984989474071 0.9093625442163329 1.063784546916188 0.752194612780557 1.0 14.8660348798508 2.5885742793256528 5.426113076626787 0.9493182312858223 1.1358780814249838 0.5348004223270968 0.09090637052059455 0.18697971359994126 7.761026450863504 0.028588413370719466 0.026771458638257105 387.770064885769 -2.5885742793256528 0.18655985013916154 GGTLGGGTLGPPS(ph)PPGAPSPPEPGGEIELVFRPHPLLVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 GGTLGGGTLGPPS(1)PPGAPSPPEPGGEIELVFRPHPLLVEK 207.48 1.1313999999999999e-31 2117100000.0 405880.0 422890.0 400750.0 355120.0 380550.0 451350.0 442990.0 424230.0 500280.0 457020.0 True False 403694.787177507 436965.63800759707 457172.11661855644 400078.1555887265 429010.7868034338 420149.2368636162 421560.8813138623 455888.1967962909 376992.6974085502 427852.59232549305 0.943537083609376 1.0212994985786394 1.0685271629037092 0.9350840985073736 1.0027069941814437 0.9819953049249812 0.9852946759596952 1.065526316712064 0.8811275288984326 1.0 18.706754306223704 1.236871893391356 24.999998504327415 0.9405638027216598 1.0030549328459424 0.18854297545941778 0.049506528949010906 69.82850368580374 1033593.1775893247 0.03838112066974315 0.011508188593181675 17.253288856742497 -1.236871893391356 0.062491130124282535 GGTLKDDDWGNIK ddPTM_BT-474_Trastuzumab_2h_R1 4 GGTLKDDDWGNIK 13 1 P54578-2;P54578 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14 0 ;;; 214.65 2.7781e-11 4957780000.0 11042600.0 9372700.0 7815400.0 7914000.0 8459000.0 11856000.0 10973400.0 10847100.0 16801000.0 12772100.0 False True 10983147.868548194 9684664.653583214 8915740.38732543 8915911.588559292 9536203.509578886 11036422.626022026 10442574.719541153 11656565.68245774 12660618.671865849 11956973.64325506 0.9185558316208046 0.8099595217428903 0.7456519227467568 0.7456662408542454 0.7975432407980816 0.9230113702096919 0.873345967893123 0.9748759201316145 1.0588480872840023 1.0 23.511348948198975 1.9918776387110053 1.0764850356745164 1.0290246246942396 0.8005180130572416 0.7097546225385385 0.05555689205787462 0.2820157521139454 0.6020101708914272 0.04560204480740687 0.021176604721579534 98.14713771700617 -1.9918776387110053 -0.22850661163699804 GGTMTDLDEQEDESMETTGKDEDENS(ph)TGNKGEQTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTK 35 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 GGTMTDLDEQEDES(0.008)MET(0.007)T(0.007)GKDEDENS(0.714)T(0.25)GNKGEQT(0.013)K 60.937 0.011544 384830000.0 48659.0 30498.0 20467.0 21385.0 18882.0 41382.0 38815.0 31881.0 65676.0 30089.0 True False 48397.02535052311 31513.107493569667 23348.575697646877 24092.338807346547 21286.51077761776 38521.359742749904 36937.370162300685 34260.12210843773 49491.029813312445 28168.69425951108 1.7181139070435254 1.1187280178217474 0.8288838482374203 0.8552877384159131 0.7556797124321952 1.367523797442023 1.3112915288868559 1.2162481438723378 1.7569515064263916 1.0 14.781805069673789 2.69808452816113 24.919183902836856 1.3313113279888307 1.0351653865708947 0.16715051565628214 0.3053375475408237 879.9619869894717 541749.3862110056 0.10041816913380246 0.09467636115781888 498.9815964360345 -2.69808452816113 -0.29614594141793593 GGVDHAAAFGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GGVDHAAAFGR 11 0 Q9HC38-2;F6TLX2;Q9HC38;I3L3Q4 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 ;;;;; 163.64 2.3714e-05 4246510000.0 2769110.0 3350650.0 2898000.0 2964200.0 2876020.0 3020520.0 2806700.0 2495510.0 3290690.0 2939980.0 False True 2754201.4194370457 3462174.3597393045 3306013.2101324378 3339467.4160737297 3242264.0994939185 2811718.5619392754 2670929.1983647873 2681737.6281430135 2479743.542486887 2752347.9593564873 1.0006734105236432 1.257898496434578 1.2011610664610155 1.2133158544585017 1.177999347238049 1.0215708927285012 0.9704184346623325 0.974345419890157 0.9009556855110221 1.0 21.392231440346976 2.6215046758412464 2.8019146677810287 0.9622408698714365 1.1807580552430768 0.6849593938766865 0.06744124630158377 0.14890026196263856 2.2686625444205513 0.022994524460737523 0.021387156232066763 418.31619243788606 -2.6215046758412464 0.21851718537164022 GGVILVSHDER ddPTM_BT-474_Trastuzumab_2h_R1 3 GGVILVSHDER 11 0 Q9NUQ8-2;Q9NUQ8 Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 0 ;; 128.51 0.00026424 904700000.0 1055670.0 1260620.0 1223330.0 1211580.0 1301960.0 1221970.0 1237150.0 1074260.0 1414630.0 1292840.0 False True 1049986.390015962 1302578.974639117 1395564.2306250224 1364965.9037739024 1467756.8886784888 1137498.0901079734 1177304.3281280508 1154426.7361817483 1066013.3915708337 1210329.8443439903 0.8675208621209073 1.0762181736872947 1.1530445499188948 1.1277635680492752 1.2126916439658861 0.9398248712312862 0.972713623174483 0.9538116750376077 0.88076270824225 1.0 20.20696883992411 2.702155616915166 24.390832418047566 0.9491631923212035 1.0927079480179578 0.3779087820595902 0.08841554097893436 467.0857393026305 312940.1466929152 0.029281635374970045 0.027607962401567078 503.681056051856 -2.702155616915166 0.1435447556967543 GGVTGS(ph)PEASIS(ph)GSKGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 GGVT(0.115)GS(0.885)PEAS(0.022)IS(0.549)GS(0.429)KGDLK 99.064 0.00048713 640330000.0 425160.0 240100.0 181550.0 212860.0 242890.0 452880.0 422080.0 403350.0 890810.0 380940.0 True False 422870.9857997164 248091.58335648518 207110.66193911142 239808.05417497258 273820.60177817935 421573.47156484844 401662.3778978193 433450.0251697992 671281.8117424458 356628.0830608575 1.1857478585822832 0.6956591338157436 0.5807469231293505 0.6724317729460753 0.7678043731947287 1.182109574620651 1.126278038595398 1.2154119256385996 1.8823021619076858 1.0 18.444060788441167 2.3993865223507873 1.318826321287554 1.368550248309609 0.7529842918316115 0.4767897042593624 0.2636512970119316 0.3699064745344401 1.2897919368479187 0.14445844742624925 0.09796985231277658 250.83406846190118 -2.3993865223507873 -0.6155659564779975 GGVTGS(ph)PEASISGS(ph)KGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 GGVT(0.011)GS(0.989)PEAS(0.001)IS(0.209)GS(0.79)KGDLK 153.94 2.3203e-08 440290000.0 834380.0 416720.0 376980.0 379260.0 367490.0 929300.0 793080.0 750070.0 1719800.0 749760.0 True False 829887.7907883333 430590.27328744077 430055.5072311004 427274.27711359615 414287.6732161188 865059.6783368972 754715.690540189 806044.0321782855 1295978.3341393312 701909.6748981692 1.1823284682729736 0.6134553898974385 0.6126935168595468 0.6087311407633521 0.5902293244158835 1.2324373196058271 1.0752319244633304 1.1483586293282306 1.846360551060003 1.0 19.42092586399702 2.7298888937387447 23.471503627447415 1.2439395075357844 0.7031774177951663 0.4984780236119243 0.2697495820891721 234.57417913084714 634913.1497294212 0.08575866563989624 0.08212940219805526 536.8944242281281 -2.7298888937387447 -0.5407620897406181 GGVTGS(ph)PEASISGSK ddPTM_BT-474_Trastuzumab_2h_R1 7 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GGVTGS(1)PEASISGSK;GGVT(0.001)GS(0.999)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVT(0.001)GS(0.998)PEASISGSK 381.86 9.241299999999998e-99 29802140000.0 16419300.0 15805000.0 15288330.0 13856820.0 13824250.0 20624800.0 19558900.0 17168400.0 23892600.0 20409200.0 True False 16330900.313155739 16331059.87067575 17440793.975453462 15611091.991228249 15584686.294750683 19199056.1215569 18612761.28474618 18449593.187368736 18004588.874437362 19106667.3828048 0.8547225942632395 0.8547309451449927 0.9128119324016415 0.8170494455394968 0.8156674307721632 1.0048354188043933 0.9741500656203859 0.9656102143680272 0.9423196894420603 1.0 24.18757282716418 2.736707834645161 24.99920932863051 0.974222046474073 0.852752185719051 0.8165250533909455 0.02993083913805753 73.57689341026683 992750.7459622083 0.00982265296119422 0.009695719935045054 545.3908338241827 -2.736707834645161 -0.12146986075502197 GGVTGSPEAS(ph)ISGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GGVTGS(0.234)PEAS(0.766)ISGSK 324.17 5.7419e-57 1374700000.0 905510.0 845280.0 795030.0 714010.0 733250.0 1042700.0 1071900.0 892640.0 1241600.0 1039100.0 True False 900634.8347716198 873414.6338174503 906963.3134753597 804403.5927909055 826625.0411867512 970620.6032517854 1020048.1019443538 959253.3295340755 935624.3165876232 972783.7483817339 0.9258325257487732 0.8978507661856109 0.9323380607294589 0.8269089549748998 0.8497521083816174 0.9977763350451249 1.048586701454713 0.9860910311565475 0.9618009327808704 1.0 19.891759601321798 2.7253064667965314 23.858105386092426 1.0011596076705105 0.8863969484868062 0.7124599908506666 0.03566075619170177 240.01590641237405 432039.0761056759 0.01222311040575955 0.01159434384616973 531.2592034798693 -2.7253064667965314 -0.11476265918370432 GGVTGSPEASISGS(ph)KGDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GGVTGSPEAS(0.001)IS(0.336)GS(0.663)KGDLK;GGVTGSPEASIS(0.036)GS(0.964)KGDLK 199.94 4.0579e-16 570790000.0 1161160.0 723880.0 699030.0 635200.0 639640.0 1194240.0 1014980.0 956890.0 1914330.0 965250.0 True False 1154908.4435770034 747973.9082052999 797447.3479223195 715616.2548714776 721094.3625566897 1111684.9997385736 965881.5397998708 1028297.9907889662 1442569.022207783 903646.9186078993 1.278052765737509 0.8277280570574851 0.8824766969280612 0.7919202070360736 0.7979824284329564 1.2302205395124508 1.068870506732703 1.137942231212492 1.5963857038655238 1.0 19.78539965385047 2.7299300585511896 24.68512839191957 1.197134363569346 0.9020336335802398 0.35068741094833233 0.1973726007429417 604.4419014110837 1728821.75343878 0.0625505701571103 0.059832714992866506 536.9453164375957 -2.7299300585511896 -0.2951007299891063 GGYDKDGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGYDKDGR 8 1 Q92804-2;Q92804;A0A075B7D9;A0A075B7E4;A0A075B7F2 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ;; 92.838 0.010483 1527500000.0 3240990.0 3702220.0 3171350.0 3123470.0 3061480.0 2858930.0 3693050.0 3022350.0 4926300.0 3913520.0 False True 3223540.8699478433 3825446.1546607483 3617848.5141316494 3518900.9817434074 3451341.3311863774 2661298.89829733 3514403.0626789746 3247893.1041823276 3712279.3740380174 3663755.8030669573 0.8798459949894568 1.0441324040915716 0.9874698829826817 0.9604627521293065 0.9420227538902112 0.7263854474333515 0.9592350723094158 0.8864927901208624 1.0132442153842351 1.0 21.804891917342857 5.092281543627961 12.818274585592755 0.937604704702422 2.01047685055888e-05 0.04377967577049369 0.08466704360823675 719183.1820081043 2122582.777327311 0.02051761189312127 18279349.95320314 123674.89309420649 -5.092281543627961 -0.9375845999339164 GGYFDEFGIIR ddPTM_BT-474_Trastuzumab_2h_R1 3 GGYFDEFGIIR 11 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ;; 164.96 5.1564e-05 374413000.0 437780.0 534930.0 503930.0 516450.0 455940.0 472230.0 489760.0 444070.0 656350.0 501050.0 False True 435423.0411219304 552734.8216779862 574878.9637619188 581832.5170471882 514001.2564318947 439585.8516098493 466068.43773511273 477208.75834177004 494601.337139406 469072.5600295127 0.9282637234088791 1.1783567592255018 1.225565110280058 1.240389156446459 1.0957819753932212 0.9371382789523903 0.9935956128104979 1.0173452872872066 1.0544239405269988 1.0 18.839451582460594 2.9715631219543486 7.68889181656698 1.0034183371485004 1.1536814683910823 0.3898881220331767 0.08450588729336417 0.229075188323835 52.48489045041587 0.02606140053990704 0.028394586245164576 936.6193416954275 -2.9715631219543486 0.15026313124258195 GGYIGSTYFER ddPTM_BT-474_Trastuzumab_2h_R1 4 GGYIGSTYFER 11 0 P61081 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 ;;; 227.08 9.9274e-12 2830620000.0 1007630.0 1250080.0 1178740.0 1274410.0 1132780.0 1169900.0 1254610.0 1070940.0 1399750.0 1192680.0 False True 1002205.032038217 1291688.1571106827 1344696.346208251 1435750.1753317986 1277032.8184869098 1089027.5666483773 1193919.7212243741 1150858.98092313 1054800.3681890504 1116562.141295279 0.8975810615212146 1.156843949242491 1.2043184131680507 1.2858667889869904 1.1437185367985658 0.9753398636506162 1.0692819298345149 1.0307164629351167 0.9446857717792749 1.0 20.09063211465721 2.752055647765743 21.89621159701463 1.0133770175590244 1.1506675890450528 0.31332697905606277 0.09750217286561308 189.3022752544306 307148.41375166865 0.030794331435573655 0.03242528348090216 565.0093669239473 -2.752055647765743 0.1372905714860284 GGYVLHIGTIYGDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GGYVLHIGTIYGDLK 15 0 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 246.53 3.4876e-18 5739800000.0 7909600.0 8434300.0 8024800.0 7585700.0 6911000.0 8086500.0 8972900.0 8117600.0 12583200.0 9070900.0 False True 7867015.592439167 8715030.576857975 9154622.08718799 8546048.842220653 7791074.885293728 7527499.288573463 8538846.547193287 8723376.532337567 9482238.966241432 8491987.396011794 0.9264045300083534 1.0262651332891675 1.078030578741485 1.006366171272728 0.9174618993137879 0.8864237471794534 1.0055180429499342 1.0272479368533263 1.116610108335147 1.0 23.017670799290407 1.6601845255669745 3.091347758098371 1.060192823279414 0.978385290407837 0.23410594303900134 0.05955484799990151 0.32542558293806484 7.2693916624611905 0.03980248815641445 0.0172783893264047 45.728244116947984 -1.6601845255669745 -0.08180753287157705 GHADSVTGLSLSSEGSYLLSNAMDNTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHADSVTGLSLSSEGSYLLSNAMDNTVR 28 0 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 100.29 0.0014127 49685000.0 24893.0 30554.0 28935.0 32661.0 30748.0 27089.0 29920.0 25008.0 39084.0 33413.0 False True 24758.978853872286 31570.97141971698 33008.79649247144 36795.87925119224 34663.57554232554 25216.401190646953 28472.655294500484 26874.2239480509 29452.27189876824 31280.553733691482 0.7915134452113303 1.0092842885230864 1.0552497495246866 1.1763180269906903 1.108150956579464 0.8061366625836618 0.9102350149202544 0.859135173144501 0.9415521269064349 1.0 14.93297843125417 2.742179412216199 24.996278818915226 0.8924648550607613 1.036800080781742 0.2585386640284085 0.1042457824247573 402.0015397186977 2776766.833315093 0.033551950755347636 0.03432610115106773 552.3055561532734 -2.742179412216199 0.14433522572098056 GHALLILRPEELGFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHALLILRPEELGFLR 16 1 Q9NVP1;H7C452 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 0 ; 164.65 4.388899999999999e-09 479040000.0 134719.0 162683.0 170577.0 182466.0 156919.0 168859.0 155333.0 123525.0 191379.0 157788.0 False True 133993.68787268814 168097.80531104974 194592.75891813694 205566.17689133977 176901.70451821858 157186.17478133008 147818.94936031546 132743.0627472405 144216.20979721544 147717.83475089667 0.9070921469885327 1.1379655381120415 1.3173274523437715 1.391613796925709 1.1975649711934648 1.0640974737166997 1.0006845118572805 0.8986258360142578 0.9762951781713686 1.0 17.17248449521349 2.469739198838772 2.3337529749792725 0.9522200704576671 1.2049356412941696 0.42175457846935005 0.12173165537462537 0.28813787720634193 3.181730408584867 0.05164433330361736 0.04292193787434887 294.94375077772236 -2.469739198838772 0.25271557083650253 GHAVGDIPGVR ddPTM_BT-474_Trastuzumab_2h_R1 6 GHAVGDIPGVR 11 0 D6RD47;P62266 D6RD47 RPS23 40S ribosomal protein S23 0 ;;;;; 136.02 0.00010785 5308290000.0 1115646.0 1289130.0 1224400.0 1174130.0 1113974.0 1153480.0 1146700.0 1004442.0 1307360.0 1231130.0 False True 1109639.4858959233 1332037.9127544588 1396784.877324418 1322774.7376137392 1255831.9858588045 1073742.6425998544 1091229.7401806063 1079398.5624931278 985178.6457264776 1152558.2293765785 0.9627621907624833 1.1557228769907455 1.2118996174969332 1.1476858208970764 1.0896039383086848 0.9316168287485521 0.9467892487921022 0.9365241034953844 0.8547755945132274 1.0 20.13640820944576 2.801084398545136 3.509073583774357 0.9303321276929434 1.1278974712940422 0.6344099758426891 0.06823862113539288 0.15151942112106986 3.724696830371195 0.022116942900559548 0.023064826642302142 632.5347629696636 -2.801084398545136 0.1975653436010988 GHAYSVTGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 GHAYSVTGAK 10 0 P07384;E9PL37 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;; 166.07 5.661000000000001e-06 2116280000.0 3786690.0 4343390.0 3984480.0 4106680.0 3995270.0 4478690.0 4581300.0 3868590.0 5269460.0 4644530.0 False True 3766302.881780812 4487957.110515297 4545460.150278993 4626585.266932611 4504043.9526794255 4169088.70200224 4359685.016734466 4157283.830101983 3970872.1901464337 4348112.1190178115 0.8661926782678218 1.0321622321756219 1.045387061294491 1.0640446106936414 1.0358619624778298 0.9588273227287407 1.002661591375723 0.9561123808005819 0.9132405240376846 1.0 22.05195771103841 2.1402792623075437 1.486959491433065 0.9545067403386667 1.0120307720829407 0.09937583893801649 0.05691456718482927 0.8134035597781839 3.446427954558241 0.03538196000963717 0.019152481121358974 138.12721719499467 -2.1402792623075437 0.05752403174427401 GHDDLGDHYLDCGDLSNALK ddPTM_BT-474_Trastuzumab_2h_R1 3 GHDDLGDHYLDCGDLSNALK 20 0 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;Q13098-6;J3KSA5;J3KRJ4;J3QLT0 Q13098-7 GPS1 COP9 signalosome complex subunit 1 0 ;; 147.92 6.7336e-08 2301310000.0 2512550.0 2537450.0 2216530.0 2109410.0 2274570.0 2713270.0 2588460.0 897800.0 3431770.0 2091070.0 False True 2499022.709970547 2621907.4893290857 2528598.1575758667 2376461.0897173216 2564223.0070673693 2525708.0312505676 2463246.300922553 964798.3949360261 2586056.2668620385 1957616.1223449062 1.2765642259714962 1.3393368901092142 1.2916721152393333 1.2139566397066177 1.3098701925257168 1.2901957653603606 1.2582887282170439 0.49284350691817674 1.3210231757615294 1.0 20.90066645751087 1.9530324648422204 24.109582508146865 0.8800947136476996 1.2861712024662988 0.39550132127334203 0.19170305428053308 213.84670496926742 109772.14478909347 0.073949230871265 0.04772592262838417 89.74958825583214 -1.9530324648422204 0.40607648881859915 GHDGGHSHGGDMSNRPVCR ddPTM_BT-474_Trastuzumab_2h_R1 11 GHDGGHSHGGDMSNRPVCR 19 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 ;;;;;;;;;; 155.79 1.4401e-08 735789100.0 132394.7 205377.22 198547.0 217507.6 213709.83 185882.57 183086.59 15367.65 165190.6 73795.75 False True 131681.9016456339 212213.07661454898 226500.69179853878 245044.03985844343 240924.5100930973 173032.9454564035 174229.99218300596 16514.46207834552 124481.59007063422 69086.04205527988 1.9060565307861654 3.071721440414036 3.2785304391486494 3.54693991099344 3.487310937574325 2.504600644482564 2.52192754136348 0.23904194808455392 1.8018341529976352 1.0 16.0761066416578 1.909012063928067 4.689051325296124 0.9807352514947743 3.001991848732182 0.6968172731594784 0.575835405068937 0.11942173497128593 4.295463290367046 0.2690881357533441 0.15782121471438482 81.09835852221552 -1.909012063928067 2.021256597237408 GHDGTPESDCFAFTESHYNAELFR ddPTM_BT-474_Trastuzumab_2h_R1 3 GHDGTPESDCFAFTESHYNAELFR 24 0 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3;Q9Y3P9-4 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 0 ;; 181.75 1.8682000000000003e-17 627140000.0 454130.0 439870.0 403210.0 420850.0 410600.0 480810.0 460310.0 313252.0 579520.0 399510.0 False True 451685.01453858626 454510.8070429698 459978.4632358524 474129.5668492779 462887.47618312924 447572.736404997 438043.04674503783 336628.45490142517 436705.0611701508 374012.9297622812 1.2076721915086537 1.2152275252405105 1.2298464214277567 1.2676822888198807 1.2376242620203954 1.196677175544358 1.1711976027766033 0.9000449666683523 1.1676202249149945 1.0 18.512728619901292 1.932119078113518 6.483459857716129 1.0153816033501257 1.2246233191251934 0.673705764943813 0.06322870159543564 0.12622538990846813 9.769722599531342 0.026072525662315417 0.016100924517085457 85.53011936240658 -1.932119078113518 0.20924171577506767 GHDLNEDGLVSWEEYK ddPTM_BT-474_Trastuzumab_2h_R1 6 GHDLNEDGLVSWEEYK 16 0 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-13;O43852-14;O43852-11 O43852 CALU Calumenin 0 ;;;;; 243.9 5.0345999999999995e-20 7728220000.0 9162280.0 9580670.0 8752190.0 7987990.0 8216370.0 9833200.0 10060500.0 8555940.0 12481090.0 9238280.0 False True 9112951.302505001 9899556.809312696 9984422.276600782 8999268.71497293 9262676.01725957 9153454.028863002 9573835.180157825 9194427.688982999 9405292.607537528 8648685.061110562 1.0536805581558342 1.1446314369599107 1.154443965302478 1.0405360643132668 1.0709924054131492 1.058363666174199 1.106970032150583 1.0631012256795438 1.0874823792381003 1.0 23.044049372591346 3.733248480054813 24.999668387707725 1.0665346733495904 1.1202899320689799 0.3247097832163436 0.036702667179720705 497.5352673033661 2341474.940972902 0.009243478433144168 0.01480406544085621 5410.638021479297 -3.733248480054813 0.053755258719389465 GHEFYNPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 GHEFYNPQK 9 0 P78406 P78406 RAE1 mRNA export factor 0 ;;; 163.32 6.3108e-05 3163950000.0 4899090.0 5098240.0 5092500.0 4586270.0 3847710.0 5170170.0 5143920.0 3837650.0 6890060.0 5104480.0 False True 4872713.843780071 5267931.836448841 5809479.735196499 5166891.311759145 4337693.061336067 4812768.31717107 4895088.937917346 4124034.930191842 5192097.035073872 4778707.716234807 1.019671872214719 1.102375819837648 1.2157009970414865 1.081231918454764 0.9077125697810579 1.007127575687575 1.024354120108069 0.8630021284166782 1.0865065083253886 1.0 22.188189098943713 3.3895394293401533 6.275001548953811 0.9717958076740963 1.1173942662353182 0.4058733288553903 0.07309940064806604 0.1840812057315415 10.69851679330385 0.020290717333572544 0.027598578968769886 2452.1070690599818 -3.3895394293401533 0.1455984585612219 GHEFYNPQKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHEFYNPQKK 10 1 P78406 P78406 RAE1 mRNA export factor 0 ; 147.75 1.7091e-05 2270280000.0 1222990.0 1284060.0 1249340.0 1162280.0 1021080.0 1285620.0 1345030.0 1092930.0 2031290.0 1475920.0 False True 1216405.5577269618 1326799.1608693385 1425236.2125420514 1309424.5288287455 1151108.485584681 1196748.115423957 1279965.7603864311 1174489.9863860875 1530705.797391489 1381725.5220013156 0.88035252903565 0.9602479940788669 1.0314901113483916 0.9476734040000592 0.8330949000040146 0.8661257944273663 0.9263531287549108 0.850016857678749 1.1078219031334007 1.0 20.398039623996663 1.2365395604241771 24.999999563036265 1.053910969820138 0.9121641029748572 0.46528567884255034 0.060886397417476514 50.34991437664424 622737.6034048157 0.05274062549665728 0.01571526674983175 17.240091260087983 -1.2365395604241771 -0.14174686684528093 GHEGPVWQVAWAHPMYGNILASCSYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHEGPVWQVAWAHPMYGNILASCSYDR 27 0 P55735;P55735-4;P55735-3;P55735-2;A8MXL6;E7ERC8 P55735 SEC13 Protein SEC13 homolog 0 ; 232.0 1.1400999999999999e-35 2557700000.0 523390.0 589270.0 612540.0 679480.0 489750.0 566870.0 574300.0 362090.0 583950.0 589410.0 False True 520572.1263940952 608883.495728763 698780.3077068755 765502.0983313468 552116.7595243241 527683.6111684458 546518.9149609506 389110.9944557645 440043.34702910966 551793.3491807118 0.943418631571089 1.1034629116730335 1.266380446129708 1.3872985230212436 1.0005861077232854 0.9563065809907577 0.9904412870731543 0.7051752164709963 0.7974785264854577 1.0 19.073768542288146 2.566649494628126 1.5252961030765282 0.8272548644503335 1.1687831237482067 0.4680297804832002 0.13887338719008863 0.3234539194562024 1.5212643698203203 0.06595093860557644 0.05463332062377575 368.6799285298996 -2.566649494628126 0.3415282592978732 GHEGPVWQVAWAHPMYGNILASCSYDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHEGPVWQVAWAHPMYGNILASCSYDRK 28 1 P55735;P55735-4;P55735-3;P55735-2;A8MXL6;E7ERC8 P55735 SEC13 Protein SEC13 homolog 0 58.26 0.020458 383650000.0 73340.0 91971.0 84098.0 72365.0 71875.0 71712.0 72275.0 65409.0 114900.0 87135.0 False True 72945.14558883994 95032.19913735641 95938.26740708009 81526.40158024948 81027.85521349836 66754.71823189025 68778.78213268788 70290.15172017216 86584.43458111938 81573.9696999734 0.8942208630661225 1.1649819113484605 1.1760892323855041 0.9994168713389961 0.9933052849029705 0.8183335747593514 0.8431461946213255 0.8616737910230091 1.061422349550651 1.0 16.31582124037562 3.2047654724705503 2.3213518414628966 0.9002617087585069 1.0835005616597488 0.2882379996089637 0.10210070674591325 0.30365777534876615 3.354074621923247 0.031537355604411114 0.04181657712231337 1602.379840494416 -3.2047654724705503 0.18323885290124198 GHEYTNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHEYTNIK 8 0 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 124.98 0.0012814 256310000.0 350800.0 350960.0 356160.0 337970.0 317410.0 422640.0 394770.0 301840.0 488970.0 359050.0 False True 348911.33177754434 362641.4914402001 406304.2322017841 380756.9673471555 357830.28206353437 393423.8915875461 375673.46693215135 324364.8335124634 368469.89536231424 336135.12160182925 1.0380091497574873 1.0788562936001942 1.2087526892922367 1.1327497273497749 1.0645429741418222 1.1704337520956187 1.1176263436617535 0.9649834625037831 1.0961957608190296 1.0 18.358681767197396 1.7601912361898622 24.999999999999954 1.018982202635647 1.118778840436715 0.3789268691048152 0.05590817593885738 10.654332081933129 12324.07343973012 0.025716079195314493 0.014260875048600768 57.56933809744046 -1.7601912361898622 0.09979663780106796 GHFDYQSLLMR ddPTM_BT-474_Trastuzumab_2h_R1 3 GHFDYQSLLMR 11 0 Q9H832-2;Q9H832 Q9H832-2 UBE2Z Ubiquitin-conjugating enzyme E2 Z 0 ;; 218.15 1.0824e-11 3304474000.0 2097033.0 2852066.0 3057770.0 2623712.0 1875463.0 2152751.0 2358680.0 1815689.0 3255220.0 2236170.0 False True 2085742.8073302717 2946995.292699693 3488277.4373867074 2955873.67018475 2114292.096309892 2003936.390400767 2244581.6373673924 1951184.933061927 2453014.6487132395 2093455.716118545 0.996315704827722 1.407717999482543 1.6662771562487537 1.4119590146693934 1.0099531029153936 0.9572384908701318 1.072189690990478 0.93204022327236 1.1717537800423832 1.0 20.997454969699074 3.237387439860911 24.955891400776817 1.014779479400714 1.394343247332813 0.5130497012476125 0.16468106545233197 23.266868734837722 494938.78820835915 0.04766669227841184 0.0600772403769464 1727.3782218099946 -3.237387439860911 0.3795637679320991 GHFEEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHFEEEK 7 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;F5H4J1;F5H6Y5 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 127.84 0.003815400000000001 340330000.0 397240.0 365940.0 351320.0 351880.0 292570.0 380400.0 428600.0 347910.0 554310.0 410210.0 False True 395101.30397751275 378120.09168459824 400782.8022718177 396427.9719209304 329827.05530174915 354103.84336528135 407866.9805890012 373872.8108511832 417707.7278734579 384030.04660155 1.0288291436410697 0.9846106965607209 1.04362355450705 1.0322837377676435 0.8588574207162516 0.9220732765545333 1.0620704921356927 0.9735509347764514 1.0876954331306532 1.0 18.550859666599976 -0.32252508794074997 6.813248561990706 1.0000010067450606 0.9958115508014771 0.0 0.06507997057012847 0.0 0.0 0.06320119258863556 0.014896663958999771 0.4758553014052972 0.32252508794074997 -0.004189455943583553 GHFFVEDQIYCEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHFFVEDQIYCEK 13 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 0 157.52 4.7703e-05 303110000.0 326520.0 335260.0 273660.0 283540.0 267320.0 345640.0 373350.0 312530.0 444270.0 338300.0 False True 324762.05259978224 346418.92643104994 312188.9493046386 319436.1349279891 301361.61747022433 321746.7203490422 355289.6341644972 335852.57559518376 334785.6114130018 316709.4043667982 1.0254259839523359 1.0938068830751977 0.9857268050779945 1.0086095661309538 0.9515398447758162 1.0159051670483712 1.1218158642141778 1.0604439620814508 1.0570750561775821 1.0 18.272800181815235 2.429875061044592 24.970458884792 1.0667340736444813 1.0125457224459327 0.2085884697937087 0.043412031153643525 164.82160301930298 87110.13574422913 0.015328009501623665 0.012824335028280372 269.076060762717 -2.429875061044592 -0.05418835119854859 GHFGPINSVAFHPDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHFGPINSVAFHPDGK 16 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 240.2 4.3101e-20 1484000000.0 1532900.0 1647500.0 1617300.0 1419800.0 1429400.0 1659600.0 1710700.0 846390.0 2268100.0 1463500.0 False True 1524647.0367212018 1702336.0415652199 1845001.7821763966 1599546.5344246281 1611425.6172824274 1544875.7582781836 1627946.905491375 909551.9196813349 1709157.145982914 1370098.177034613 1.1128013030577768 1.2424920126889663 1.3466201277412444 1.16746855169651 1.1761387937688772 1.1275657351955992 1.1881972640930298 0.663858937211298 1.2474705642497437 1.0 20.38584784531736 1.9443136662573293 24.964534603867694 0.93132733336704 1.19865600607493 0.32026290652773237 0.14626049914453412 268.8817699805514 120540.8013468252 0.05783314790883019 0.03732476396269392 87.96576142285669 -1.9443136662573293 0.26732867270789007 GHGDSVDQLCWHPSNPDLFVTASGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHGDSVDQLCWHPSNPDLFVTASGDK 26 0 Q96J01;Q96J01-2 Q96J01 THOC3 THO complex subunit 3 0 119.33 0.00023626 292280000.0 171210.0 214610.0 224810.0 228930.0 234580.0 280960.0 271950.0 194120.0 269510.0 267900.0 False True 170288.2243832192 221753.16411551528 256461.29391645058 257912.51452727854 264452.37253540783 261537.89650869966 258794.7395501137 208606.22012138678 203092.87174897743 250802.39263927046 0.6789736835889961 0.8841748349445105 1.0225631869681535 1.028349497838462 1.0544252379432846 1.0428046309943706 1.0318671079120791 0.8317553031538478 0.8097724651338805 1.0 17.936191585863625 4.660165312331331 2.8601954752571217 0.9735487709457187 0.6516011412556543 0.5443546218166 0.08273484263329832 0.2946295845487351 3.68089364553025 0.023296169596209577 0.1995088879410395 45726.221139147696 -4.660165312331331 -0.3219476296900644 GHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYK 36 0 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 0 150.68 1.4151e-13 136730000.0 65116.0 98523.0 93331.0 99699.0 96855.0 124140.0 111690.0 70704.0 117560.0 104640.0 False True 64765.42269106773 101802.27849658873 106471.1935524054 112320.88317763126 109188.91014543828 115558.49399412726 106287.12800276608 75980.29150763729 88588.91322329317 97961.78561318881 0.6611294627356019 1.0392039902025108 1.086864565462463 1.1465785609619314 1.1146071854649608 1.179628293530915 1.0849856128843003 0.7756115410926921 0.9043211357242374 1.0 16.579931450631967 1.7529639503476824 24.999999999999204 0.8745665545957518 1.0579184701206703 0.17809386274256367 0.1454856516342454 6.751707561108828 11734.863574297695 0.06817782086604801 0.037808171735068306 56.619228894230766 -1.7529639503476824 0.18335191552491847 GHHDDS(ph)DEEASPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHHDDSDEEASPEK 14 0 Q5VT06;H0Y6Q4 Q5VT06 CEP350 Centrosome-associated protein 350 1 GHHDDS(1)DEEASPEK 124.5 6.2297e-05 149200000.0 180200.0 166710.0 128210.0 125670.0 161000.0 187660.0 153710.0 94335.0 222980.0 156770.0 True False 179229.8232221021 172258.84157167692 146260.8535787025 141579.80911476476 181502.3956782362 174687.50590412362 146274.4600707778 101374.75672342387 168029.5667789208 146764.8043824503 1.2212043887242348 1.1737067500379208 0.9965662693731763 0.9646713986401393 1.2366888399569163 1.1902547524194584 0.9966589788761976 0.6907293417518156 1.144890067383303 1.0 17.16314651189065 2.0092252786894877 9.990688870255426 0.8940650226421839 1.1212946979396192 0.2585731380372811 0.1365178435718337 0.20496424464093782 194.93687859457725 0.05279467375594843 0.038119148910416976 102.14692062368907 -2.0092252786894877 0.22722967529743532 GHHVTDS(ph)ENDEPLNLNAS(ph)DS(ph)ESEELHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 GHHVT(0.13)DS(0.872)ENDEPLNLNAS(0.975)DS(0.804)ES(0.218)EELHR 45.192 0.066816 144390000.0 51512.0 56084.0 34534.0 55776.0 59914.0 58819.0 53722.0 20806.0 52013.0 39757.0 True False 51234.66511552125 57950.72203650604 39396.08702509099 62837.23588115789 67543.69276189967 54752.98097503276 51123.2616220306 22358.64937072725 39195.09308849227 37219.67422231985 1.3765479195085728 1.556991651521609 1.0584747945339614 1.6882801151299633 1.8147308963116917 1.4710763089430416 1.3735547849414829 0.6007212539576512 1.0530745877670202 1.0 15.183777807329628 1.8833158939537011 5.6883377523678815 0.8590574803278903 1.4944804938229406 0.6112681039822401 0.21782561245059628 0.1465962206852106 6.185063418729507 0.09931604524637948 0.05956658088035141 76.4391578991342 -1.8833158939537011 0.6354230134950503 GHIISDGGCSCPGDVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHIISDGGCSCPGDVAK 17 0 A0A087WWM4;Q9P2T1;Q9P2T1-3;F8WAN9;H0YNJ6;Q9P2T1-2;H0YMB3;H0YLV5;H0YLB8;H0YNS9;H0YKE1 A0A087WWM4 GMPR2 GMP reductase;GMP reductase 2 0 209.66 1.8839e-17 0.0 150210.0 148000.0 125820.0 131840.0 127060.0 164810.0 152740.0 99770.0 189050.0 164370.0 False True 149401.2860499 152926.09053211086 143534.36235295507 148530.9304821404 143240.3378563771 153417.0726210094 145351.38267653759 107215.34402179453 142461.16064021416 153879.76587576303 0.9708962396688412 0.99380246429266 0.9327695654855592 0.965240164207547 0.9308588237132112 0.9969931507750851 0.9445776177869224 0.6967475120046409 0.9257952780824489 1.0 17.23144401416102 1.969583472298621 24.637079355169547 0.835530265842558 0.9639968082475809 0.1715697650984651 0.07652337499186304 567.0264366361862 459284.802851823 0.029664876473062946 0.019178304950056735 93.23596545773101 -1.969583472298621 0.12846654240502298 GHIVLLQEAETLIQIEEDSTHIICDNDEMLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHIVLLQEAETLIQIEEDSTHIICDNDEMLR 31 0 Q9NV88-3;Q9NV88-2;Q9NV88;H0YBK3 Q9NV88-3 INTS9 Integrator complex subunit 9 0 ; 293.43 1.6683999999999994e-81 186807000.0 14505.1 13589.5 21282.0 28171.6 18008.8 21471.9 19964.7 11293.099999999999 25691.6 19144.0 False True 14427.00615326812 14041.818292473776 24278.32061353988 31738.121671500772 20302.113933479653 19987.59809241582 18998.931188439627 12135.84846719984 19360.24942980231 17922.213529997018 0.8049790350461536 0.7834868315217597 1.354649668295963 1.7708817952860343 1.132790539488848 1.1152415999821617 1.060077269843955 0.677140044497721 1.0802376278688122 1.0 14.129461211785022 1.9802258528024996 5.992880702657825 0.8785192518688814 1.1724178675863919 0.12436095921563206 0.27906658028075837 0.32464806715282607 41.9165203035993 0.12817794908164623 0.0832432867808816 95.5489354583628 -1.9802258528024996 0.2938986157175105 GHKHEDGTQS(ph)DSEDPLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHKHEDGTQSDSEDPLAK 18 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 GHKHEDGT(0.001)QS(0.999)DSEDPLAK;GHKHEDGT(0.089)QS(0.911)DSEDPLAK 289.31 2.3876999999999997e-49 1338480000.0 1049930.0 716830.0 713880.0 618210.0 649770.0 1002090.0 913280.0 730090.0 1552400.0 860420.0 True False 1044277.2935381895 740689.2532171146 814388.098843806 696475.3226135006 732514.3580114766 932817.8769661274 869101.157331597 784573.0231219012 1169831.8210942526 805507.2589573766 1.2964219526585885 0.919531444292432 1.0110251518998408 0.8646418947421982 0.909382690057468 1.158050242990408 1.0789488830386635 0.97401111460799 1.45229209058705 1.0 19.619538064504127 2.728448021623327 24.670654119680737 1.1135198951246406 0.9887893259116504 0.13207207516958186 0.16490636804378977 1287.849379538188 3141828.29541866 0.05217500619144765 0.049723396056334426 535.1161047626881 -2.728448021623327 -0.1247305692129902 GHLDALTADVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHLDALTADVK 11 0 P57740;P57740-2;P57740-3 P57740 NUP107 Nuclear pore complex protein Nup107 0 99.522 0.004712 172010000.0 115500.0 119500.0 111340.0 105760.0 109510.0 135340.0 124700.0 87513.0 169070.0 135310.0 False True 114878.16083325639 123477.48526072463 127015.70421537125 119149.20515618291 123455.44938337688 125984.2643560915 118667.78459973975 94043.6644420097 127404.96392193084 126674.3999552808 0.9068774817469926 0.9747627405720117 1.0026943428207353 0.9405941942353431 0.9745887837397273 0.9945518936783365 0.9367937376583779 0.7424046569410192 1.0057672581587753 1.0 16.950765469402725 1.9875301164638144 24.74472215649687 0.87547649993823 0.966924759480318 0.001971108142157507 0.07526736758060723 737.6907451263199 1463841.9996010007 0.02879370028476091 0.01960226747558902 97.16953321538455 -1.9875301164638144 0.09144825954208802 GHLENNPALEK ddPTM_BT-474_Trastuzumab_2h_R1 5 GHLENNPALEK 11 0 F8VWS0;P05388;P05388-2;F8VU65;F8VW21;F8VQY6;F8VRK7;G3V210;Q8NHW5;F8VWV4;F8VPE8;F8VZS0;F8VS58 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 ;;;; 207.95 2.1234000000000003e-08 15503310000.0 20270300.0 21110800.0 19764800.0 19384800.0 18139000.0 21868300.0 22620400.0 16449300.0 28863700.0 22329000.0 False True 20161166.95704207 21813460.216251932 22547512.041278698 21838913.692431673 20448894.131723784 20356595.89344107 21526164.833680417 17676830.293852933 21750627.888764642 20903944.103181325 0.9644671291468764 1.0435093065969399 1.0786247767399666 1.044726946486049 0.9782313821156703 0.9738160317001157 1.0297657096396655 0.8456217738911164 1.0405035423652162 1.0 24.317271836243354 3.1501962796760448 4.290199702524293 0.9638460949985116 1.0368873375769092 0.15718886496042128 0.057226538295835065 0.30856678460592213 10.431492654063169 0.01725990913456938 0.0211590139641533 1413.1760861766065 -3.1501962796760448 0.07304124257839761 GHLSRPEAQSLS(ph)PYTTSANR ddPTM_BT-474_Trastuzumab_2h_R1 4 GHLSRPEAQSLSPYTTSANR 20 1 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 1 GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQS(0.002)LS(0.998)PYTTSANR;GHLSRPEAQS(0.001)LS(0.999)PYTTSANR 192.2 7.1698e-18 1088090000.0 244787.0 430394.0 499929.0 510270.0 473962.0 534792.0 555855.0 308629.0 432996.0 521168.0 True False 243469.09399039234 444719.40411133267 570314.657739234 574870.1296808379 534318.2513071327 497823.0878049561 528966.1700776928 331660.46316630684 326289.9376491415 487906.6120456269 0.4990075723089897 0.9114846840192943 1.1689012685196007 1.17823803877263 1.0951240219248464 1.0203245365291378 1.0841545431407809 0.6797621818974067 0.6687549002074771 1.0 18.896245509044878 -1.6300776576242568 6.218242425551341 1.0003315509303021 0.9338045850366253 0.008559432692464397 0.2225912026103471 0.0010882919778559784 6.474227314562087e-05 0.22924554980681142 0.053765578437360725 0.023438096735328755 1.6300776576242568 -0.06652696589367679 GHMLADVVAIIGTQDIVFGEVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHMLADVVAIIGTQDIVFGEVDR 23 0 O75306 O75306 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial 0 152.95 5.6249e-08 16285000.0 23959.0 29446.0 28224.0 28613.0 35701.0 45350.0 26396.0 18595.0 32272.0 29790.0 False True 23830.007406095134 30426.092309517124 32197.693872594224 32235.402866243003 40247.31073359453 42215.06124241722 25119.124637487785 19982.65332349675 24318.99802264478 27888.776695497865 0.8544658543571778 1.0909798103273873 1.15450362789817 1.1558557486476924 1.4431364693056519 1.5136935443006387 0.9006893673304361 0.7165123641555273 0.8719994529760295 1.0 14.767397033383416 2.026537371528157 22.859832116182837 0.8256541566335762 1.2040322601792257 0.43337636161336235 0.18364879917026536 74.04893930059801 63786.50409378134 0.07374665562841298 0.05446265456807353 106.30100525495746 -2.026537371528157 0.3783781035456495 GHNCPKPVLNFYEANFPANVMDVIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHNCPKPVLNFYEANFPANVMDVIAR 26 1 P17844;J3KTA4;J3QRQ7;J3KRX8;J3KTQ4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 109.68 0.0014138 327700000.0 228060.0 350680.0 298940.0 321730.0 345920.0 331840.0 349450.0 258620.0 444690.0 349330.0 False True 226832.15029984788 362352.1718094636 341028.1535669399 362460.9850122798 389970.86157152517 308900.681867337 332545.7684713636 277919.5376457505 335102.1080407136 327035.46032354044 0.6936010855686411 1.10799046516541 1.042786471013132 1.1083231911722737 1.192442132072534 0.9445479752004189 1.0168492680957952 0.8498146878959275 1.024665972641599 1.0 18.31908754948517 1.9632766903934926 22.476543458182046 0.9394376101397487 1.0284172934877132 0.025736986787748717 0.13338941627734016 453.531950865441 277582.1561538477 0.05412273497508086 0.03494687956822395 91.89178555122986 -1.9632766903934926 0.08897968334796447 GHNEGNQSLISAEPIVVS(ph)S(ph)DEEGPVEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHNEGNQSLISAEPIVVSSDEEGPVEHK 28 0 J3QT09;Q9BQF6-4;Q9BQF6-5;Q9BQF6-2;Q9BQF6 J3QT09 SENP7 Sentrin-specific protease 7 2 GHNEGNQSLISAEPIVVS(1)S(1)DEEGPVEHK 109.97 0.00032055 171900000.0 70856.0 85335.0 73031.0 81993.0 64384.0 95990.0 81572.0 74014.0 113900.0 86827.0 True False 70474.51916884162 88175.3238889032 83313.1300031685 92373.30539306841 72582.92076613395 89354.43723615493 77626.05072469897 79537.30051547672 85830.87118180587 81285.62652366543 0.8669985356922079 1.084759110065196 1.0249429519856474 1.1364039294963781 0.8929367204299301 1.0992649138300037 0.9549788079950271 0.9784915724592501 1.0559169542331956 1.0 16.310712647270314 GHNGWVTQIATTPQFPDMILSASR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHNGWVTQIATTPQFPDMILSASR 24 0 P63244;J3KPE3;D6RHH4;D6RAC2;D6REE5;E9PD14;D6RFZ9;D6RAU2;D6RBD0;D6R909;D6RGK8;D6RHJ5;D6RDI0 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ; 239.19 1.6934e-37 3630500000.0 437110.0 615570.0 550380.0 627000.0 623490.0 586900.0 565950.0 472270.0 690580.0 605410.0 False True 434756.6483274868 636058.8753300769 627868.7200112804 706378.135712241 702887.7557852395 546328.984413995 538572.8363610479 507513.18553846853 520395.8122979056 566772.2154824217 0.7670747373482896 1.122247806005593 1.1077972823294715 1.2463175088972744 1.240159161978256 0.9639304282920327 0.9502456571598676 0.8954447160160922 0.9181745295241023 1.0 19.112409510095304 2.5548257282981672 8.330859240486149 0.9323586628433389 1.1070586386447356 0.26239973994922616 0.12625270651406137 0.4357749999089648 43.18642872530067 0.0420939070438123 0.0395997092065135 358.77793698723156 -2.5548257282981672 0.17469997580139673 GHPAGGEENMTETDAFYK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHPAGGEENMTETDAFYK 18 0 P55212;D6RBM3 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 0 ; 233.49 9.6186e-24 663980000.0 345450.0 328590.0 303930.0 277680.0 284780.0 348840.0 347740.0 305300.0 406370.0 358930.0 False True 343590.1355831035 339526.9195131508 346720.70219308266 312834.2595288279 321045.04497669684 324725.5118810324 330918.4877041979 328083.0362819875 306225.55857902067 336022.78010456654 1.0225203644710699 1.0104282793193182 1.0318368953592583 0.9309912245576843 0.9554264293533646 0.9663794573093569 0.984809683442354 0.9763714120212079 0.911323805141207 1.0 18.358199515863046 3.7508414515905284 24.997854828064362 0.9621482680699395 1.0204784936766522 0.5638146317796814 0.02449439791154163 574.7646621091889 1169940.3255024115 0.0062184959160878515 0.011105102580649265 5634.319255036213 -3.7508414515905284 0.05833022560671275 GHPDLQGQPAEEIFESVGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHPDLQGQPAEEIFESVGDR 20 0 P49257 P49257 LMAN1 Protein ERGIC-53 0 ; 217.82 1.0316e-24 910920000.0 438160.0 644690.0 639560.0 557350.0 538020.0 687110.0 622940.0 471990.0 719610.0 653800.0 False True 435800.99524415296 666148.1169266659 729604.4888448261 627910.4528536166 606533.6579056197 639611.7029829612 592806.0123381062 507212.2905166562 542271.7577799762 612073.9242536586 0.7120071252431696 1.088345852568288 1.1920202118305891 1.0258735554194185 0.9909483705668486 1.0449909359606868 0.9685202862725331 0.8286781553962341 0.8859579477122854 1.0 19.223346381788513 1.9701476525532893 6.0220029218328195 0.8880444556516821 1.0200556608900133 0.1206088739544039 0.12112742526213943 0.312983870216592 35.87018759884983 0.051445737895871695 0.032772393968359584 93.35716449335902 -1.9701476525532893 0.1320112052383312 GHPEFSTNR ddPTM_BT-474_Trastuzumab_2h_R1 6 GHPEFSTNR 9 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ;;;;; 168.74 5.8996e-05 1755030000.0 136703.0 282042.0 238114.6 275231.0 253037.0 148474.0 223266.6 189898.0 92804.0 237895.0 False True 135967.00623713102 291429.5974720108 271639.06595079415 310075.2163799298 285259.7620821983 138210.34185020172 212466.34159676186 204069.15304250512 69933.69770988867 222712.33742784357 0.6105050479351324 1.3085471637440422 1.2196857573676283 1.3922678014207044 1.280844004318438 0.6205778424600317 0.9539944847716337 0.9162902935658935 0.3140090868677019 1.0 17.764821954668285 2.7447686410467678 24.806020636112184 0.7853518079092132 1.1864472347087456 0.34913170461572895 0.27202371628735666 519.030207921518 2073941.585014403 0.08289704541978289 0.08590789649136762 555.608192777782 -2.7447686410467678 0.40109542679953236 GHPHSASSPS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 2 GHPHSASSPSER 12 0 C9J470;E9PHA2;Q15003;C9JZP1 C9J470 NCAPH Condensin complex subunit 2 1 GHPHS(0.001)AS(0.23)S(0.197)PS(0.572)ER;GHPHS(0.002)AS(0.251)S(0.185)PS(0.562)ER 98.682 0.00082012 0.0 98194.0 153900.0 125715.0 155256.0 148158.0 123950.0 148848.0 49782.0 114878.0 102164.0 True False 97665.33441437894 159022.46846548558 143414.5792656315 174911.39368124382 167025.0430987339 115381.62824691534 141647.6535854213 53496.9856278739 86567.85618633451 95643.80605299902 1.0211360091657136 1.6626530773709132 1.4994654142701234 1.8287791013285306 1.7463236773135153 1.2063680128222734 1.4809913932840586 0.5593355998215888 0.9051067681096332 1.0 16.545383921398777 1.7522664496769718 24.99999789545498 0.7972492454925821 1.510797772473257 0.601789771955318 0.24948980112372385 2.668706925555817 4874.818524789198 0.11473465961489927 0.06362642621284813 56.52836830163986 -1.7522664496769718 0.713548526980675 GHQAFDVGQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GHQAFDVGQPR 11 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 ;; 149.49 3.4333000000000005e-05 446630000.0 172717.0 240134.0 217499.0 222706.0 213630.0 217838.0 217642.0 169466.0 232463.0 228644.0 False True 171787.1108626625 248126.71502593174 248120.96866480177 250900.55676543963 240834.51421578636 202779.3717954943 207113.82498682043 182112.41345091164 175175.60849461058 214051.74416802294 0.8025494561156941 1.1591903443270295 1.1591634986633685 1.1721490882526595 1.12512287695605 0.9473380961395941 0.9675876540592143 0.8507868700568024 0.8183797295157942 1.0 17.70760006560026 2.4871180059812823 2.1510946863323386 0.8894064892299551 1.0963559925440385 0.34741598498656157 0.11252482513677117 0.31708186827871815 2.966078582735627 0.044870497187033793 0.03728880929044728 306.9856012709012 -2.4871180059812823 0.20694950331408335 GHQFSCVCLHGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GHQFSCVCLHGDR 13 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ;; 213.67 2.3543000000000004e-09 2929820000.0 102106.0 108368.0 100165.0 116435.0 110472.0 108616.0 125142.0 75864.0 109204.0 111043.0 False True 101556.27264104315 111974.96337016077 114267.36135021244 131175.6590616506 124539.95438115619 101107.63157456198 119088.4033711357 81525.35690958638 82292.13745862966 103956.14067130473 0.9769146101926808 1.0771365947896283 1.0991881827501695 1.2618365612129667 1.1980047891055776 0.9725989337585227 1.1455639138016593 0.7842283907725908 0.7916043913060055 1.0 16.66561545489746 1.7443454561521246 9.070638854408726 0.8441583552350977 1.1078079137419707 0.556134846773594 0.10028546750402814 0.07476579309976669 25.493725938534244 0.04874697412888643 0.0262992911401061 55.50670611577467 -1.7443454561521246 0.263649558506873 GHQLLEEVTQGDMSAADTFLSDLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHQLLEEVTQGDMSAADTFLSDLPR 25 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 ; 246.21 6.8877e-39 175854000.0 109748.0 158725.0 131272.0 164155.0 145136.0 141751.0 138345.0 113772.0 153908.0 144024.0 False True 109157.12896214915 164008.06567371136 149753.95656332167 184937.00616880847 163618.20931153127 131952.08701596214 131652.72382077787 122262.24436251004 115979.43566153968 134832.26501485019 0.8095772102480573 1.216385897364016 1.110668552121616 1.3716079467213567 1.2134944799266751 0.9786388072723482 0.9764185434864413 0.9067729029772236 0.8601756830886577 1.0 17.0408062454892 2.609508027425665 4.305936396190247 0.9325194457525212 1.158430781081314 0.3460953012564498 0.1373665518734133 0.25206534155158483 7.66204630824016 0.046140784845457514 0.043128884722882774 406.91905516259686 -2.609508027425665 0.2259113353287927 GHQQLYWSHPR ddPTM_BT-474_Trastuzumab_2h_R1 5 GHQQLYWSHPR 11 0 A0A2R8Y851;P62273;P62273-2 A0A2R8Y851 RPS29 40S ribosomal protein S29 0 ;;;; 204.69 1.8708e-08 4079160000.0 1686560.0 2284880.0 2489750.0 2052750.0 1294665.0 1592527.0 2084820.0 1145648.0 3052430.0 2072960.0 False True 1677479.7483544312 2360930.849560875 2840285.158705051 2312627.939526801 1459532.9136693394 1482439.356895325 1983969.2918141875 1231142.0712426666 2300199.5269664614 1940661.9180496535 0.8643853588059698 1.2165595808329086 1.4635651538726075 1.19166966591016 0.7520799476171284 0.763883365313399 1.0223157745106153 0.6343928634823486 1.1852654527678574 1.0 20.88811737792907 3.252298957951758 23.86885545608061 0.8616887281011553 1.2063333869163473 0.32480235398062995 0.20156701130741864 135.63700505639505 235651.83584475506 0.0551034033224934 0.07416508779179547 1787.7177736140318 -3.252298957951758 0.344644658815192 GHRPVS(ph)PAPGASGLRPCLWQLETELR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHRPVSPAPGASGLRPCLWQLETELR 26 2 Q13129 Q13129 RLF Zinc finger protein Rlf 1 GHRPVS(1)PAPGASGLRPCLWQLETELR 86.675 0.0066232 266670000.0 30058.0 56420.0 49074.0 57493.0 51033.0 52429.0 50165.0 39213.0 46195.0 48859.0 True False 29896.171067757736 58297.90559338975 55983.192641145375 64771.60790510994 57531.75005371078 48804.70663459078 47738.32730109014 42139.27317957935 34810.86123128643 45740.77678970556 0.6535999859645186 1.2745281056641413 1.2239230850523066 1.4160583280624885 1.2577781596979547 1.0669846482706606 1.0436711103654486 0.9212627361646214 0.7610465688269854 1.0 15.481193245979842 2.036883372280774 1.6808268853072117 0.8792887760020494 1.1823517656860074 0.25058042668201164 0.1967325279956526 0.4829310523109056 2.5629639424896675 0.1219110715347603 0.06207920422190531 108.86377055931966 -2.036883372280774 0.30306298968395806 GHS(ph)PAQKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GHSPAQKPK 9 1 Q14966;Q14966-3;Q14966-4;A0A096LPI0;Q14966-2;Q14966-6;A0A096LPB4 Q14966 ZNF638 Zinc finger protein 638 1 GHS(1)PAQKPK;GHS(1)PAQKPK;GHS(1)PAQKPK;GHS(1)PAQKPK 133.05 0.00017434 2074290000.0 3593920.0 2553620.0 2273780.0 1945090.0 2136310.0 2335180.0 2901220.0 2733120.0 3960510.0 2981430.0 True False 3574570.734042051 2638615.698004111 2593908.4599499465 2191338.19456543 2408356.4155985937 2173754.503022441 2760876.9048633277 2937079.2929021483 2984495.3786150473 2791152.5848693587 1.2806790834078892 0.9453498573699842 0.9293323747369963 0.7851015406483041 0.8628537288337885 0.7788017447724682 0.9891529828321987 1.052281881264338 1.0692698761055868 1.0 21.41242956417501 2.0058429360190333 24.865923033174756 1.0399241435798925 0.9182061330719348 0.11978577770263266 0.13231377190070084 279.3505822713268 1188832.4503811079 0.05147559196544778 0.03790164070816706 101.35447677568276 -2.0058429360190333 -0.12171801050795772 GHS(ph)PFTLRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHSPFTLRPK 10 1 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 GHS(0.995)PFT(0.005)LRPK;GHS(0.999)PFT(0.001)LRPK 118.61 0.00048606 627950000.0 669080.0 794110.0 710820.0 734920.0 686770.0 804830.0 751450.0 536900.0 821020.0 729210.0 True False 665477.7476217756 820541.4713003685 810897.2774418008 827960.7966469544 774226.0886952938 749193.9964660346 715099.4926822323 576966.2043229581 618690.6221043571 682671.1934919104 0.9748144552838255 1.2019570755626032 1.1878299321434749 1.2128251558585292 1.1341127267067967 1.0974448660032885 1.0475020764014502 0.8451597340320398 0.9062790813535163 1.0 19.380831350552274 2.0401364598410767 2.5048768531867367 0.9033668231692505 1.1462838039116274 0.6275307369386743 0.07412993748903335 0.16490392023557374 1.9852514529741963 0.03698404171446344 0.021417761200142906 109.68227751235561 -2.0401364598410767 0.2429169807423769 GHSAQIAKPIRPGQHPAAS(ph)PTHPSAIR ddPTM_BT-474_Trastuzumab_2h_R1 3 GHSAQIAKPIRPGQHPAASPTHPSAIR 27 2 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 GHSAQIAKPIRPGQHPAAS(0.954)PT(0.046)HPSAIR;GHSAQIAKPIRPGQHPAAS(0.994)PT(0.006)HPSAIR;GHSAQIAKPIRPGQHPAAS(0.991)PT(0.009)HPSAIR 220.26 1.7569e-34 7255260000.0 2031712.0 2911860.0 2993550.0 2978950.0 3104390.0 3258830.0 3037400.0 2196072.0 2938960.0 3097980.0 True False 2020773.4883364257 3008779.499843462 3415015.819596951 3356084.7645613723 3499715.6653388795 3033554.7525606696 2890469.3580052075 2359954.0440676603 2214692.6880463604 2900264.2640858847 0.6967549520779066 1.0374156372925485 1.1774843630234872 1.1571651611613243 1.2066885451357074 1.0459580494527094 0.9966227539324716 0.8137031074344113 0.7636175487423712 1.0 21.467752929949324 1.9174507026102947 3.192669498640315 0.8416940549030998 1.0687917461480585 0.2566719277836417 0.14526697663648355 0.31509400799528614 5.727675919385618 0.07622814688495004 0.041795550719965824 82.6895641129981 -1.9174507026102947 0.2270976912449587 GHSERS(ph)DTNEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHSERSDTNEKR 12 2 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 GHS(0.03)ERS(0.969)DT(0.001)NEKR 65.374 0.031788 56561000.0 74644.0 70186.0 50480.0 74826.0 62164.0 59810.0 59020.0 55615.0 105780.0 76172.0 True False 74242.12499772802 72522.09858166707 57587.14521997432 84298.96392791744 70080.21692510489 55675.475477595835 56164.9771217052 59765.27370724773 79711.93637938044 71310.63774586983 1.0411086949229813 1.01698850093186 0.8075533614661812 1.1821372882449068 0.9827456202937099 0.7807457237447081 0.7876100803061205 0.8380975909966423 1.1178126980640724 1.0 16.121829685930557 2.9746933562234044 23.767057757299025 0.8806474036286676 1.0082992405649127 0.12547080436550817 0.12751852149197943 684.6306089018618 642979.9682908413 0.03883461995071726 0.04137635270460372 943.3945352942291 -2.9746933562234044 0.12765183693624516 GHSES(ph)PEKPLEGNTCLSQMHSWAPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHSESPEKPLEGNTCLSQMHSWAPLK 26 1 Q8TEQ0;Q8TEQ0-2 Q8TEQ0 SNX29 Sorting nexin-29 1 GHS(0.257)ES(0.743)PEKPLEGNTCLSQMHSWAPLK 122.63 6.7222e-05 153230000.0 140650.0 134470.0 91874.0 93277.0 107670.0 148990.0 137760.0 107370.0 187000.0 119340.0 True False 139892.7560276839 138945.7526611685 104809.06061687651 105085.85863609379 121381.13628991121 138690.6719847353 131096.02250569483 115382.4946138127 140916.35567162163 111723.6190278856 1.2521323355338807 1.2436560314653646 0.9381101465278954 0.9405876711697367 1.0864411424017257 1.2413728913500275 1.1733957747374257 1.0327493471636813 1.261294226751191 1.0 16.769574686688784 0.23030965569558834 0.007356236679774131 5.800052197908043e-07 2.181619129186172 0.03603862686203829 0.12365274211857441 30468.638176364886 79.38204267895703 12032.905126641775 11504.973769567443 1.6994549465517512 -0.23030965569558834 2.181618549180952 GHSLSDGLEEVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHSLSDGLEEVQK 13 0 C9JNK6;O75431-2;O75431;C9JAZ1 C9JNK6 MTX2 Metaxin-2 0 86.803 0.0086588 296370000.0 291320.0 270770.0 267650.0 289110.0 321300.0 384480.0 313080.0 280880.0 490680.0 314730.0 False True 289751.5654886947 279782.4157660782 305332.79354449565 325711.2963568836 362215.6505056981 357901.8025685681 297935.1243182555 301840.69187974004 369758.4887751401 294643.6619460907 0.9833965664657973 0.9495619689157557 1.03627816572671 1.1054413802950807 1.2293346074824807 1.2146937090201226 1.0111709932955117 1.024426216692101 1.2549344735024124 1.0 18.168611707273914 3.944047675628078 2.86349994283927 1.116908923495674 0.9675247357778459 0.3382656062633216 0.08691878944438054 0.32592252377249614 5.262859413973698 0.024583715412503655 0.05454447331405854 8791.190187499358 -3.944047675628078 -0.14938418771782802 GHTAS(ph)ESDEQQWPEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 GHTASESDEQQWPEEK 16 0 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GHT(0.232)AS(0.757)ES(0.01)DEQQWPEEK;GHTAS(1)ESDEQQWPEEK;GHTAS(0.994)ES(0.006)DEQQWPEEK;GHTAS(0.999)ES(0.001)DEQQWPEEK;GHTAS(0.991)ES(0.009)DEQQWPEEK;GHTAS(0.999)ES(0.001)DEQQWPEEK 417.43 1.492899999999999e-140 4402920000.0 3571310.0 3249040.0 3213060.0 3103860.0 3234380.0 4356420.0 3852820.0 2950850.0 5177430.0 3974830.0 True False 3552082.463769844 3357182.3323138487 3665430.919581825 3496808.357754061 3646259.1213277937 4055270.939309615 3666444.3773983074 3171057.411112688 3901521.7505076122 3721152.94637683 0.9545650272796219 0.9021887518981535 0.9850256015815583 0.9397110003658392 0.9798734891770686 1.0897888363492572 0.9852979520683797 0.8521706731243732 1.0484712148976305 1.0 21.827318258483007 3.2321449867356833 22.400318811103055 0.9802258816647461 0.9451203914147068 0.10693675200287045 0.06085267785751691 136.66958405466488 477185.98590040306 0.019405195074146064 0.02379718243171701 1706.6520499613925 -3.2321449867356833 -0.035105490250039284 GHTDSVQDISFDHSGK ddPTM_BT-474_Trastuzumab_2h_R1 5 GHTDSVQDISFDHSGK 16 0 P43034 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 ;;;; 305.4 1.2774e-46 1940470000.0 1504091.0 1812523.0 1724684.0 1587594.0 1469997.0 1862605.0 1785639.0 1047490.0 2284993.0 1844298.0 False True 1495993.1411762214 1872851.732361707 1967504.5159779342 1788583.237620318 1657192.4045951595 1733847.5004505524 1699260.819766597 1125659.0228464443 1721887.0924875159 1726593.3226570426 0.8664420981740204 1.0847092408996395 1.1395297839737704 1.0359030202131672 0.9598047107265059 1.0042014397358763 0.9841696926938279 0.6519537681949188 0.9972742682901817 1.0 20.719496883530475 1.974758922497609 24.20962901680901 0.8378185470798438 1.020003724717284 0.1782146289518347 0.11508933210170919 552.7330016726418 530145.1271072831 0.04620910347474342 0.02998444749910462 94.3536972135522 -1.974758922497609 0.18218517763744013 GHTDTEGRPPS(ph)PPPT(ph)STPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 GHT(0.002)DT(0.013)EGRPPS(0.982)PPPT(0.521)S(0.351)T(0.132)PEK 65.741 0.055889 580060000.0 126870.0 138500.0 127480.0 135730.0 131640.0 141010.0 132630.0 101470.0 135570.0 153110.0 True False 126186.94601658205 143109.88877498187 145428.07592397646 152913.40408328947 148403.57370859024 131262.3106018357 126214.1802041979 109042.20665421964 102160.59004492918 143338.38871593404 0.8803429921809539 0.9984058705905715 1.0145786988870353 1.06680007674937 1.0353372535999013 0.9157512636895162 0.8805329914397695 0.7607327501798413 0.7127231648137861 1.0 17.129065516647543 2.2784068318422293 2.118114863668914 0.8035790841551073 1.0019605392785504 0.43338326383353065 0.08496241768603756 0.24874245657985097 2.2775430876071243 0.03780168355329462 0.026205186188658375 189.84835212773746 -2.2784068318422293 0.19838145512344318 GHTDTEGRPPS(ph)PPPTS(ph)TPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 GHTDT(0.002)EGRPPS(0.997)PPPT(0.064)S(0.677)T(0.261)PEK 107.47 0.00030033 585440000.0 123160.0 103780.0 85381.0 79245.0 75504.0 119530.0 114130.0 96375.0 158930.0 136820.0 True False 122496.92024436234 107234.25456366532 97401.90265504403 89277.40887482703 85118.9868527301 111267.17244335462 108609.09588106086 103566.99188233398 119763.83105289197 128088.03046250486 0.9563494715473886 0.8371918451432193 0.7604293883147532 0.6970004031794459 0.6645350587824592 0.8686773622920668 0.8479254110543447 0.8085610459335706 0.9350118869065628 1.0 16.966776139818112 1.1010576992122598 1.1793190471663322 1.0035756227190116 0.7914777361045773 0.4003077386015004 0.08031187915520828 0.4835356050990974 1.394479018876225 0.08010376287136217 0.025460186028785078 12.619951887848591 -1.1010576992122598 -0.2120978866144343 GHTDTEGRPPS(ph)PPPTST(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 GHT(0.005)DT(0.028)EGRPPS(0.967)PPPT(0.018)S(0.31)T(0.673)PEK;GHT(0.006)DT(0.037)EGRPPS(0.937)PPPT(0.05)S(0.242)T(0.728)PEK;GHT(0.007)DT(0.033)EGRPPS(0.91)PPPT(0.27)S(0.178)T(0.603)PEK 142.28 2.7647000000000004e-06 1844960000.0 837650.0 659120.0 572920.0 549069.0 545700.0 840840.0 783120.0 597300.0 983950.0 851560.0 True False 833140.1854716649 681058.4107535458 653582.1560900883 618581.0791026871 615191.6603826929 782714.7099244569 745237.4937910843 641873.5590279443 741468.7067545027 797212.7117428039 1.0450663583252695 0.8542994871025944 0.8198340875188483 0.7759297738120527 0.7716781874160149 0.981814136171195 0.9348038269007333 0.8051471703514745 0.9300763721310489 1.0 19.604605188906422 2.736751977587704 24.98250406566899 0.9094776724733981 0.8472492823825153 0.1406462288178444 0.08723977987106744 409.49095758241174 5656195.770717668 0.028994013550892563 0.02860947098335246 545.4462717374416 -2.736751977587704 -0.06222839009088277 GHTDTEGRPPS(ph)PPPTSTPEK ddPTM_BT-474_Trastuzumab_2h_R1 9 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 GHTDT(0.002)EGRPPS(0.998)PPPTSTPEK;GHT(0.001)DT(0.008)EGRPPS(0.991)PPPTSTPEK;GHT(0.005)DT(0.005)EGRPPS(0.989)PPPT(0.001)STPEK;GHTDT(0.003)EGRPPS(0.996)PPPTSTPEK;GHT(0.048)DT(0.035)EGRPPS(0.886)PPPT(0.03)STPEK;GHT(0.001)DT(0.007)EGRPPS(0.992)PPPTSTPEK;GHT(0.001)DT(0.003)EGRPPS(0.996)PPPTSTPEK;GHT(0.003)DT(0.002)EGRPPS(0.994)PPPT(0.001)STPEK;GHTDT(0.001)EGRPPS(0.999)PPPTSTPEK 161.04 1.3983e-11 18144730000.0 2322880.0 2348840.0 2200138.0 2191160.0 2196630.0 2568810.0 2555390.0 2072329.0 3041000.0 2383160.0 True False 2310373.8721762286 2427019.7194962357 2509898.3064576853 2468560.631335303 2476357.8100539423 2391234.2110283067 2431776.0231622183 2226976.7130534393 2291586.2973123034 2231064.6884740726 1.035547684525633 1.087830277640307 1.1249778275924038 1.1064495996409969 1.1099444237753755 1.0717906223793903 1.0899621314097447 0.9981677019757642 1.0271267835266689 1.0 21.08930091364929 1.758508445726246 6.69034659196148 1.0100329979667173 1.0917048410648047 0.7037647452230071 0.024046180003458848 0.08687469767265656 10.948187214801331 0.012023896603920718 0.006476440119643914 57.346701865256165 -1.758508445726246 0.0816718430980874 GHTEVIVPHLTESYNSHRDPPEEEIPFCTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHTEVIVPHLTESYNSHRDPPEEEIPFCTLK 31 1 A0AVT1;A0AVT1-2;H0Y8S8 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 42.347 0.047708 370120000.0 24924.0 36603.0 40795.0 35207.0 34613.0 38162.0 47766.0 17397.0 43409.0 36178.0 False True 24789.811953316712 37821.30872801924 46538.581403503435 39664.20259014496 39020.76038267576 35523.95076368523 45455.37609616009 18695.252480176005 32711.43360079903 33869.08906645592 0.7319302832348284 1.1166910528301635 1.3740724266952733 1.1711033182002093 1.1521053992952552 1.0488605316187347 1.3420903056167306 0.5519856894731738 0.9658197047052135 1.0 15.047681564581117 1.7440461711648507 24.999999999999996 0.8052323607120514 1.1412855613780948 0.3083311404822635 0.20002353663198363 1.1057887182492472 5058.533332151725 0.08998057621357723 0.04989882585180596 55.468468003567885 -1.7440461711648507 0.3360532006660434 GHTGGHHS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 5 GHTGGHHSPVK 11 0 H7C280;A0A0A0MQU4;Q96I15-2;Q96I15 H7C280 SCLY Selenocysteine lyase 1 GHTGGHHS(1)PVK;GHTGGHHS(1)PVK;GHTGGHHS(1)PVK;GHTGGHHS(1)PVK;GHTGGHHS(1)PVK 163.62 3.968e-05 542783000.0 732267.0 703707.0 541832.0 611221.0 581353.0 629765.0 686570.0 62247.5 720458.0 211578.0 True False 728324.555834512 727129.4620951356 618117.2359118295 688601.5159300993 655384.8586008053 586230.8278573509 653357.9861479005 66892.72453640024 542910.7795425944 198074.910898961 3.6770156933506533 3.6709821491024064 3.120623571690683 3.476470153665036 3.3087727043589097 2.959642012189975 3.2985398462765514 0.3377142730132165 2.7409366339159225 1.0 17.595686627688313 1.7587569106368706 24.999999994091954 1.3391575686079635 3.3489484837876766 0.7046050204008929 0.5931562801225115 4.472046544818932 5540.686845939251 0.2528358266556254 0.14021286450330078 57.3795199654897 -1.7587569106368706 2.009790915179713 GHVDILAPTVQELAALEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GHVDILAPTVQELAALEK 18 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ;; 158.15 4.6245e-11 922547000.0 779104.0 785450.0 749299.0 752488.0 702424.0 820300.0 890092.0 706156.0 1009580.0 938900.0 False True 774909.3906305925 811593.2284354491 854793.7861763388 847752.9036456661 791873.5328067665 763594.5917784965 847034.8494783599 758852.9465075106 760782.5366789082 878978.5981672677 0.8816021143703989 0.9233367343956702 0.972485323258887 0.9644750229565209 0.9009019496696262 0.868729447304684 0.9636581041273214 0.8633349527392048 0.865530216850778 1.0 19.745468512736274 3.205169148704108 24.495510868162523 0.9026826100419699 0.9372514129965871 0.04843918900148925 0.04748286995738876 339.6720861006331 249177.43168655253 0.013448387874472667 0.01607502658035697 1603.8699431750429 -3.205169148704108 0.03456880295461717 GHVEPGEDDLETALR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHVEPGEDDLETALR 15 0 P50583 P50583 NUDT2 Bis(5-nucleosyl)-tetraphosphatase [asymmetrical] 0 132.23 4.873100000000001e-05 832370000.0 2004400.0 2063600.0 2145100.0 2277000.0 2121900.0 2458900.0 2450700.0 1815500.0 2872400.0 2465700.0 False True 1993608.5331097774 2132285.6785274586 2447111.4344565566 2565267.96653393 2392111.3875133544 2288922.0306279976 2332150.2784168576 1950981.8289222026 2164535.5081880502 2308336.915008024 0.8636557861844216 0.9237324346650007 1.0601188321108015 1.1113056979921032 1.0362921339431248 0.9915892328135476 1.0103162425094914 0.8451893725901017 0.9377034583274974 1.0 21.138422378289164 1.7662519100511267 24.999999999998238 0.9121639418168016 1.0043873378506627 0.15389603340310254 0.07410668855659747 29.70400273691661 26833.277950366046 0.03651135630655072 0.020249242738040425 58.37836264669174 -1.7662519100511267 0.0922233960338611 GHVFEESQVAGTPMFVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHVFEESQVAGTPMFVVK 18 0 P13639 P13639 EEF2 Elongation factor 2 0 ; 167.14 2.3941e-11 3209100000.0 2006390.0 1993040.0 1768910.0 1861210.0 1795630.0 2083650.0 2156340.0 1826010.0 2603600.0 2165130.0 False True 1995587.819170885 2059377.1315818764 2017957.152358655 2096838.995165841 2024292.836967153 1939612.1798845124 2052029.5961812576 1962276.138490903 1961977.6664525876 2026949.549738947 0.9845276215325136 1.0159982185284808 0.9955635810563463 1.0344801109805102 0.9986893049350261 0.956911917286899 1.0123732958452472 0.9680932309063275 0.96794597907248 1.0 20.950878750261587 2.9893170322315403 24.94160289366247 0.9805183742033409 1.0085274881411361 0.2991775155666856 0.019332332551579366 581.7073726530178 1358120.8638063413 0.005439837399935585 0.006114271949156771 975.7016338457935 -2.9893170322315403 0.02800911393779526 GHWDDVFLDSTQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHWDDVFLDSTQR 13 0 Q9H6T3;Q9H6T3-3 Q9H6T3 RPAP3 RNA polymerase II-associated protein 3 0 ; 240.6 7.4548e-17 186890000.0 231558.0 347703.0 271302.0 289595.0 306871.0 295089.0 278030.0 244712.0 331318.0 318145.0 False True 230311.3174565122 359276.084164098 309498.9634007424 326257.69730715593 345949.2028830813 274690.1919947884 264580.6267222585 262973.6520623574 249669.1183337447 297840.713722362 0.7732700965496656 1.2062692157627724 1.0391425656105828 1.0954100036547836 1.1615242206462228 0.9222721385594255 0.8883292798206643 0.8829338634592898 0.8382639002352062 1.0 18.184181452905403 2.589089887686091 6.297049137575358 0.8930915956673442 1.0644265504485626 0.29554435355485187 0.11426601710572683 0.26157059512488195 12.890567163273184 0.03509940964244592 0.03295988241477246 388.23071135678384 -2.589089887686091 0.1713349547812184 GHY(ph)EVTGSDDETGKLQGSGVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GHY(0.331)EVT(0.331)GS(0.331)DDET(0.007)GKLQGSGVSLASK 88.79 0.017842 24654000.0 45134.0 37094.0 36373.0 30017.0 30898.0 50296.0 49720.0 39865.0 57994.0 49364.0 True False 44891.0035588588 38328.65136620351 41494.00224021644 33817.149122287636 34832.67715320587 46819.15590404888 47314.85365115523 42839.92873036828 43702.155779786226 46213.547257353326 0.9713819047230985 0.8293812884079094 0.8978752920468374 0.7317583507270539 0.7537330332863255 1.013104569604299 1.0238308128062312 0.9269993599885746 0.9456568121987758 1.0 15.496028211624308 2.7274931789041506 24.935641805074205 0.9767788527239132 0.833966917503011 0.5253635726374248 0.06884149154483939 606.4844610816901 1366445.6887896245 0.02324750910081651 0.02211338398659474 533.940887350718 -2.7274931789041506 -0.1428119352209022 GHYEVT(ph)GSDDETGKLQGSGVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 7 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GHYEVT(0.564)GS(0.436)DDETGKLQGSGVSLASK;GHYEVT(0.5)GS(0.5)DDETGKLQGSGVSLASK;GHY(0.289)EVT(0.333)GS(0.333)DDET(0.044)GKLQGSGVSLASK;GHYEVT(0.5)GS(0.5)DDETGKLQGSGVSLASK;GHYEVT(0.548)GS(0.452)DDETGKLQGSGVSLASK;GHYEVT(0.5)GS(0.5)DDETGKLQGSGVSLASK;GHY(0.006)EVT(0.459)GS(0.459)DDET(0.075)GKLQGS(0.001)GVSLASK 229.95 4.2561e-34 15628263700.0 5297135.0 4235812.0 4218274.0 3570401.0 3559319.0 5834984.0 5631885.0 4940980.0 7389749.0 5565807.0 True False 5268615.813727027 4376798.441817572 4812170.313305108 4022413.4005185403 4012577.176913446 5431625.290154889 5359449.206660022 5309701.017388058 5568644.376513425 5210592.432132884 1.0111356592076406 0.8399809616324166 0.9235361191616579 0.7719685338874261 0.7700807977550747 1.042419909233148 1.028568109378343 1.0190205982421476 1.0687161678914845 1.0 22.313015982194504 2.7209809777688414 24.772991090447487 1.0314765712927882 0.8603106578123285 0.607564811967116 0.06765030037333823 496.78711666298915 700064.8932085107 0.02214081326752698 0.02091856174203213 525.9942271780949 -2.7209809777688414 -0.17116591348045973 GHYEVTGS(ph)DDETGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GHYEVTGSDDETGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GHYEVTGS(1)DDETGK;GHYEVT(0.12)GS(0.88)DDETGK;GHYEVT(0.026)GS(0.974)DDETGK;GHYEVTGS(1)DDETGK 312.67 9.433e-56 4260770000.0 3727860.0 2869640.0 2612660.0 2307360.0 2247280.0 3631570.0 3048300.0 2727080.0 3809330.0 3148410.0 True False 3707789.615964186 2965154.2326659868 2980499.818352182 2599471.539421048 2533457.7873278665 3380528.1136962553 2900842.08336316 2930588.557431648 2870571.6639068364 2947475.778310588 1.2579542275626057 1.00599782854383 1.0112041769043891 0.8819314338559191 0.8595347266195262 1.1469231192915454 0.9841784297972561 0.9942706158933664 0.9739084829908828 1.0 21.491048526836327 4.764996908473228 3.146176656127956 0.980875225514568 1.3091323868461238 0.5586062232009545 0.07325602431423664 0.3087778715038767 4.465067456277193 0.01827761339584708 0.25786945491533136 58209.90740818505 -4.764996908473228 0.3282571613315558 GHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GHYEVT(0.029)GS(0.97)DDETGKLQGSGVSLASK;GHYEVT(0.134)GS(0.866)DDETGKLQGSGVSLASK 234.74 1.3041e-38 3649710000.0 1646270.0 1198630.0 1293640.0 930700.0 1158900.0 1730120.0 1662960.0 1510210.0 2148670.0 1861200.0 True False 1637406.6652377932 1238525.674962863 1475773.2674795499 1048526.524573179 1306479.0456615398 1610520.8766644085 1582516.2716758868 1622909.5388909923 1619159.0692029053 1742416.622546512 0.9397331522496334 0.710809148016953 0.8469692313441849 0.6017656804953889 0.7498086443597761 0.9243029800247543 0.908230701657946 0.9314130259611147 0.9292605730749585 1.0 20.732658191778494 2.732586488989505 16.353599025251135 0.9316959213074602 0.7614885590287194 0.49335029859382595 0.08518863365871399 3.6384471048234768 9957.826885184337 0.026350611547430375 0.025704536420714408 540.2396918458874 -2.732586488989505 -0.17020736227874078 GHYEVTGSDDET(ph)GKLQGSGVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 1 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GHYEVT(0.033)GS(0.357)DDET(0.605)GKLQGS(0.005)GVSLASK 76.04899999999998 0.048773 2824900000.0 663190.0 490180.0 525450.0 468510.0 468600.0 689550.0 706310.0 635290.0 940650.0 715950.0 True False 659619.4587273366 506495.3449799333 599428.7927067251 527823.3179625878 528273.4323901956 641883.0315261035 672143.0869337781 682698.5657372545 708839.4115642284 670257.4580443667 0.9841284879573456 0.7556728222879492 0.8943261809509724 0.787493390230429 0.7881649447535536 0.9576663770350989 1.0028132904256124 1.0185616848325532 1.0575628858087363 1.0 19.354355841794607 2.5308764595538453 3.4977902495359032 1.0186607376393773 0.8375142840306548 0.6454947409233234 0.062393354564930906 0.14161772353275395 3.47655704370771 0.020659644302059216 0.018550137519947316 339.52867571350623 -2.5308764595538453 -0.1811464536087225 GHYNNVSCAVFHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GHYNNVSCAVFHPR 14 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 54.871 0.079351 78951000.0 307220.0 171960.0 122340.0 139340.0 113980.0 151470.0 148630.0 94668.0 295660.0 142020.0 False True 305565.9616553506 177683.58464798488 139564.40860165717 156980.42971314784 128494.67738761095 140999.23542202733 141440.19907826226 101732.60687436369 222798.5546410249 132956.1620105608 2.2982459559195103 1.3364072936602318 1.049702446965726 1.180693149826924 0.9664439424583009 1.0604941755977257 1.0638107849941363 0.7651590218607769 1.6757294379731558 1.0 17.020591116589657 4.763253038563226 2.276135022996756 1.0653880793258654 2.6570875316347173 0.723593732118091 0.2218077174492795 0.3157713462066579 1.8163153854796854 0.053121963290463065 1.0300427627813997 57976.639476786775 -4.763253038563226 1.591699452308852 GHYTEGAELVDAVLDVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHYTEGAELVDAVLDVVR 18 0 P04350;M0R278;M0R1I1;K7ES63;K7ESM5;Q9BUF5;K7EL29 P04350;K7ESM5 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain 0 ; 162.4 3.5689999999999995e-11 34308000.0 54698.0 75585.0 73913.0 69429.0 70440.0 71052.0 73866.0 57701.0 81621.0 72680.0 False True 54403.512045519084 78100.80103290272 84319.30793668696 78218.70428128424 79410.1164694097 66140.34247841737 70292.81938447763 62006.941619741105 61506.598215365906 68041.50017552143 0.7995636766558427 1.1478406682896773 1.2392335224704765 1.1495734820588825 1.167083563186607 0.9720588509630183 1.0330874422690364 0.9113106186634121 0.9039571152414638 1.0 16.054127329368 2.6738910405687664 6.836640807129592 0.9596621890818715 1.1135402145602842 0.2568468665028376 0.11502657167429196 0.33352467744054504 29.805968770558167 0.038034523674102975 0.035903748348700595 471.94462099611474 -2.6738910405687664 0.15387802547841267 GHYTEGAELVDSVLDVVR ddPTM_BT-474_Trastuzumab_2h_R1 20 GHYTEGAELVDSVLDVVR 18 0 Q13509;A0A0B4J269;Q13509-2;G3V2A3;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 Q13509;Q5JP53;P68371;Q13885;Q9BVA1 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain 0 ;;;;;;;;;;;;;;;;;;; 355.6 1.3927999999999993e-90 95517967900.0 8195996.4 11153001.799999999 10414379.0 11398150.3 11478888.1 10875573.6 10398865.700000001 8760490.200000001 11659617.6 11129120.5 False True 8151870.066043196 11524222.722781038 11880633.039794995 12841154.959301315 12940656.458834784 10123770.795378527 9895832.838566333 9414242.463591866 8786261.07335133 10418850.501570567 0.782415494378613 1.1060934909320221 1.140301709675561 1.2324924863223254 1.2420426281079733 0.9716782858005728 0.9498008285150658 0.9035778430809365 0.8433042658618495 1.0 23.312692779912073 2.5366162003858066 6.83580925791564 0.921094634683312 1.1108353019508659 0.3150464912740164 0.12418296519938091 0.2907220145522557 27.997496767698717 0.04205969283653716 0.03929504682544882 344.04575238735174 -2.5366162003858066 0.1897406672675539 GHYTEGAELVDSVLDVVRK ddPTM_BT-474_Trastuzumab_2h_R1 2 GHYTEGAELVDSVLDVVRK 19 1 Q13509;A0A0B4J269;Q13509-2;G3V2A3;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 Q13509;Q5JP53;P68371;Q13885;Q9BVA1 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain 0 ; 314.29 8.131499999999996e-62 1522630000.0 1173910.0 1788050.0 1584590.0 1863950.0 1762400.0 1666720.0 1900320.0 1505550.0 2824100.0 2050130.0 False True 1167589.798993663 1847564.1633509507 1807686.4984968135 2099925.8788849027 1986831.193436794 1551503.56943686 1808394.2616726325 1617901.7860279952 2128138.3960012123 1919288.9481953997 0.608344981140793 0.9626295014557928 0.9418521896853937 1.0941165898231977 1.0351912854523029 0.8083741486114701 0.9422209529070465 0.8429693650605439 1.1088160529461613 1.0 20.872140494378904 4.738919347048196 24.46650119851686 0.9590823392960588 0.6083448560870379 0.5793611531651602 0.0921467360958575 16.360292730682474 1115232.8927870227 0.0224556804222257 0.13189505499259874 54817.51537036843 -4.738919347048196 -0.3507374832090209 GHYTIGK ddPTM_BT-474_Trastuzumab_2h_R1 6 GHYTIGK 7 0 P68363;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;;;; 119.57 0.0073317999999999986 45239160000.0 64859670.0 75351700.0 73085600.0 70699750.0 73278700.0 83629800.0 83042000.0 68866730.0 92591200.0 80688000.0 False True 64510472.74330682 77859735.78343551 83375417.20857672 79650331.10099132 82610308.08811657 77848668.76937382 79024941.20875356 74005915.09076917 69773339.41851473 75538422.75952771 0.8540087333921739 1.030730228923333 1.103748452281002 1.0544346597565804 1.093619711270671 1.0305837205153283 1.0461555632466006 0.9797122098559405 0.9236801202566037 1.0 26.170707324865933 1.6189436274375764 4.252820573050216 0.9590566126865847 1.036555122439968 0.15389396797291688 0.06676929450684531 0.2775344699444801 11.429153699335528 0.03893015787121411 0.017605312450454616 41.585662770993714 -1.6189436274375764 0.07749850975338335 GHYTIGKEIIDLVLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GHYTIGKEIIDLVLDR 16 1 P68363;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain 0 ; 290.89 9.544699999999999e-46 134640000.0 154475.0 230060.0 232880.0 262190.0 235720.0 265990.0 254460.0 190518.0 332370.0 264630.0 False True 153643.3237637859 237717.40802579306 265667.4797707533 295383.227117054 265737.5447780988 247602.7373731103 242150.79766840237 204735.4205908016 250461.86702982266 247741.08683885876 0.6201769989962223 0.9595396995267663 1.0723593860050942 1.1923061728924427 1.0726422014566592 0.999441556233107 0.9774349533951446 0.8264088254523972 1.0109823534952587 1.0 17.918473627894215 4.728645584723612 3.849544126092743 1.0088099425072732 0.5856808662583123 0.6480022855866461 0.08738569256329885 0.17834173856350072 5.2675779514928225 0.0253789104668035 0.21007194532930115 53535.958758566376 -4.728645584723612 -0.4231290762489609 GIALIFNHER ddPTM_BT-474_Trastuzumab_2h_R1 2 GIALIFNHER 10 0 P55212;D6RBM3;D6RHU3 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 0 ; 158.79 7.8813e-06 1115900000.0 421350.0 529760.0 542600.0 510730.0 409030.0 474420.0 506530.0 399200.0 606030.0 475500.0 False True 419081.4984163858 547392.7413533181 618993.3636362536 575388.3656336733 461117.5459892491 441624.4620645553 482027.20876749145 428990.3310965257 456682.0268859512 445153.1829039688 0.9414321058708293 1.22967275620133 1.3905176631518925 1.2925626227810205 1.0358626281882033 0.9920730189630595 1.0828344652574962 0.963691483228303 1.0258985994591203 1.0 18.763942345769173 3.1765025289921756 7.005715267911009 1.013629488849724 1.2270151041176491 0.4328391819009417 0.11000443805760274 0.19948055735625636 18.24399902731333 0.032998328323153386 0.03974126224252976 1501.4211488338694 -3.1765025289921756 0.2133856152679252 GIAPAS(ph)PMLGNASNPNK ddPTM_BT-474_Trastuzumab_2h_R1 8 GIAPASPMLGNASNPNK 17 0 H0YIY6;P27448-6;P27448-7;H0YKP9;J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 H0YIY6;J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK;GIAPAS(1)PMLGNASNPNK 289.58 6.265299999999997e-46 1788010000.0 2198580.0 2263510.0 2193460.0 1943637.0 2000080.0 2583910.0 2363730.0 2204850.0 2844230.0 2347040.0 True False 2186743.0895652003 2338849.5620293096 2502280.1021038992 2189701.244914411 2254778.3325970615 2405290.3835698813 2249387.34957452 2369387.103001441 2143307.6272293925 2197249.897797963 0.995218200604632 1.0644440417875338 1.1388236288515161 0.9965644996087532 1.0261820172829463 1.09468221433548 1.0237285034482457 1.0783421154671529 0.9754500975867013 1.0 21.0672675291224 1.2321575344450588 24.99649381678212 0.9877250165196207 1.0539924382056483 0.26617552239260056 0.04277521458520607 209.01623422366833 815925.1980923074 0.036389424170629014 0.009960567686841842 17.06701359552419 -1.2321575344450588 0.0662674216860275 GIAPAS(ph)PMLGNASNPNKADIPER ddPTM_BT-474_Trastuzumab_2h_R1 2 GIAPASPMLGNASNPNKADIPER 23 1 H0YIY6;P27448-6;P27448-7;H0YKP9;J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 H0YIY6;J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 GIAPAS(1)PMLGNASNPNKADIPER;GIAPAS(1)PMLGNASNPNKADIPER 187.75 1.4141e-17 1837020000.0 1092760.0 1409470.0 1386410.0 1257890.0 1257740.0 1589700.0 1472580.0 1349860.0 1930710.0 1525190.0 True False 1086876.7015770492 1456383.3569073912 1581604.4771082527 1417138.7450256336 1417905.7337909637 1479807.7807512823 1401345.679598112 1450593.4076501909 1454912.3906885388 1427851.0684191466 0.7611975265602392 1.019982678249374 1.107681684798776 0.9924975905187554 0.9930347535200614 1.0363880473820424 0.98143686732652 1.0159276690223886 1.018952482417759 1.0 20.445414076661535 4.738719823222214 24.999999999947608 1.0188024122339112 0.7611974505375266 0.8402271618681882 0.03365128535609822 4.816016156037764 755611.5976769784 0.008078253067761724 0.04725103805213422 54792.33685946299 -4.738719823222214 -0.2576049616963846 GIAYIEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIAYIEFK 8 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ; 135.16 0.0019674 569810000.0 783450.0 911220.0 974960.0 690150.0 388830.0 675900.0 876790.0 601990.0 1549850.0 753950.0 False True 779231.9922494779 941549.4068558775 1112225.893495763 777522.9192373272 438345.19572402927 629176.6238974589 834376.3180369353 646913.5506432804 1167910.234426005 705832.2655109309 1.1039903250744922 1.3339563135078814 1.575765160991409 1.101568966494471 0.6210330940407269 0.8913968015361506 1.182116996922711 0.916525897516174 1.6546569085795328 1.0 19.428965855572653 5.115084896049308 14.838519334204832 1.125645562531151 0.0003365165603916633 0.0 0.29977438168755305 22567768.724880416 22022400.30569816 0.07436267900858733 844570912.1877811 130342.15468865186 -5.115084896049308 -1.1253090459707593 GIDDNLDEIPDGEMPQVDHLVFVVHGIGPVCDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GIDDNLDEIPDGEMPQVDHLVFVVHGIGPVCDLR 34 0 Q9Y6Y8;Q9Y6Y8-2;H7C0V8;A0A0C4DH82 Q9Y6Y8 SEC23IP SEC23-interacting protein 0 120.15 3.429e-07 112420000.0 63951.0 75657.0 65006.0 75946.0 68775.0 66688.0 67479.0 53256.0 77032.0 75146.0 False True 63606.69492162406 78175.19750937779 74158.27975771879 85560.75581308115 77533.08858863801 62078.0155266663 64214.782975187176 57230.23314848846 58048.49577591639 70350.11794427269 0.9041448227849401 1.111230510960958 1.0541315626004026 1.2162133954182914 1.102103178420472 0.8824152302891792 0.9127885617200305 0.8135058592769234 0.8251371493349743 1.0 16.102265221738687 2.7316246709206107 15.461160601127446 0.8724683317292582 1.0858366743419439 0.5423903204743259 0.08696578668527374 2.159263259309827 4811.4161497206505 0.027603287524334188 0.026870380950161515 539.0445642102485 -2.7316246709206107 0.21336834261268567 GIDFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIDFHK 6 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1;A0A3B3ITX2;A0A3B3IS23 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 84.609 0.055656 1823990000.0 4138400.0 4759100.0 4256900.0 4419800.0 4286600.0 5044900.0 4766100.0 4479200.0 5756200.0 4873000.0 False True 4116119.3142194594 4917503.766563303 4856234.518361898 4979346.226827693 4832473.101331225 4696157.937417213 4535545.5347299045 4813460.648916739 4337661.63912828 4562000.9680148065 0.9022618239405205 1.077926945005274 1.0644965997179807 1.0914829395563452 1.0592880482079592 1.0294074837649116 0.9942009145832307 1.055120479514356 0.9508243574564278 1.0 22.121235322100926 2.463742290086125 6.56071846862174 1.009781745053835 1.045505027168995 0.08663583506841777 0.054868701680530645 0.4058942473718368 76.25859814422247 0.018671822341718283 0.016001767716659305 290.8990413784953 -2.463742290086125 0.03572328211516007 GIDIHGVPYVINVTLPDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIDIHGVPYVINVTLPDEK 19 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ; 162.33 2.7823e-11 2094400000.0 2204000.0 2081700.0 2034100.0 1876540.0 1906070.0 2367600.0 2375200.0 2313000.0 3077500.0 2337300.0 False True 2192133.908887418 2150988.126085775 2320483.599285849 2114109.7715940215 2148796.7163379886 2203933.3847309146 2260302.501854864 2485607.805176012 2319091.361387247 2188131.5129367937 1.0018291386632663 0.983025066532145 1.0604863489998457 0.9661712557471355 0.9820235683430143 1.0072216279966246 1.0329829301810138 1.1359499145643042 1.0598500810742797 1.0 21.061268020141966 1.9796649946128637 6.7870739993585385 1.0816123780461335 1.0011979488578548 0.333253726174378 0.03945968082520202 0.14866714130921818 29.36161663814029 0.01579750848557767 0.01034117108139229 95.42562094074229 -1.9796649946128637 -0.08041442918827868 GIDLLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIDLLKK 7 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ; 112.17 0.02636 0.0 1312740.0 1423100.0 1430850.0 1275500.0 1237450.0 1602870.0 1696330.0 1408090.0 2438380.0 1715180.0 False True 1305672.3536991237 1470467.023217883 1632301.2428288492 1436978.1692200375 1395031.9225592152 1492067.3696501274 1614272.0372901077 1513168.825936141 1837473.921618013 1605715.7439605254 0.813140407080185 0.915770446138213 1.016556790308819 0.8949144172154072 0.8687913335883132 0.9292226069664844 1.0053286475901881 0.9423640713666319 1.144333253584381 1.0 20.614785087910782 1.7386964518743586 1.2887937441640318 1.0542768868271732 0.9100962442605227 0.4365510739637519 0.06616023302930195 0.4288244393478587 1.3453706508514285 0.05396750525277407 0.020968087120441726 54.789388315648 -1.7386964518743586 -0.14418064256665053 GIEEEEILPGFILCDPNNLCHSGR ddPTM_BT-474_Trastuzumab_2h_R1 7 GIEEEEILPGFILCDPNNLCHSGR 24 0 P15170-2;P15170-3;P15170;H3BR35 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 ;;;;;; 313.24 1.5697999999999995e-73 2512059000.0 1477556.0 1751602.0 1540191.0 1643044.0 1527002.0 1640112.0 1675994.0 1446027.0 1780788.0 1677354.0 False True 1469601.0026679037 1809903.0137042305 1757036.5052198386 1851053.2019349034 1721456.6534500502 1526734.917848367 1594919.7673011702 1553936.8775163244 1341936.6587366597 1570303.8316649909 0.9358704812620166 1.1525814159067505 1.1189149958048916 1.178786655555845 1.0962570546776238 0.9722544688880828 1.0156759062417107 0.9895772054944854 0.8545713457973328 1.0 20.582612296611554 2.750644068048385 5.488175427844813 0.9714228891693832 1.106101279554083 0.4390239922927338 0.0730586517610459 0.16308511543664084 17.554598692425134 0.022846602546269284 0.023218710938833147 563.1759081579573 -2.750644068048385 0.13467839038469975 GIEGMIMKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIEGMIMKR 9 1 Q13393-3;Q13393-4;Q13393-2;Q13393 Q13393-3 PLD1 Phospholipase D1 0 ; 58.676 0.065073 403910000.0 377000.0 939010.0 903340.0 1098370.0 1036920.0 630160.0 662830.0 494970.0 221630.0 643350.0 False True 374970.27388863795 970264.3802064676 1030522.4200279644 1237423.5293815853 1168965.615693645 586598.5224370813 630766.3806435072 531907.1748067327 167012.2561898474 602290.8522003533 0.6225734170106627 1.6109565281654106 1.7110046022833483 2.0545281816266967 1.940865632315442 0.973945595046076 1.0472786998824972 0.8831400524572348 0.2772950237907489 1.0 19.20010082137796 2.600338116007786 5.055270975870587 0.8328555643161565 1.6197161560234956 0.4578360966031959 0.41044440382436825 0.2172280883755572 8.069597144357372 0.1404196779617915 0.1314738416347141 398.41723394293837 -2.600338116007786 0.7868605917073391 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHT(ph)PTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHTPTLR 41 0 Q5VT25-3;Q5VT25-5;Q5VT25-6;H0Y7V8 Q5VT25-3 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLS(0.003)VHT(0.966)PT(0.031)LR 212.48 6.9054e-36 153980000.0 16948.0 27436.0 31565.0 35865.0 33848.0 34374.0 35557.0 21840.0 35677.0 28835.0 True False 16856.753851099813 28349.190674587753 36009.077632101624 40405.50532267869 38158.34216718598 31997.80628769236 33836.97206906932 23469.811701272865 26884.881397307185 26994.7256131145 0.62444620081304 1.050175174250159 1.333930122060874 1.4967925920702452 1.4135480654283075 1.1853354890981844 1.25346604940599 0.8694221248120717 0.9959309008218276 1.0 14.720389932191006 1.7499463631812204 12.012627166102327 0.9515617280733201 1.213576716686641 0.18313225964413737 0.22846303339392804 0.20369579151339737 169.43769361468628 0.11477742988265666 0.06292906032749557 56.227187844736996 -1.7499463631812204 0.26201498861332084 GIEILTDMSRPVELSDR ddPTM_BT-474_Trastuzumab_2h_R1 15 GIEILTDMSRPVELSDR 17 1 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ;;;;;;;;;;;;;; 300.0 2.3211e-46 15473825000.0 7736237.0 9120007.0 8558978.0 9013628.0 8847845.0 8682544.0 8952461.0 8073750.0 9478393.0 8885890.0 False True 7694585.95956874 9423560.919834353 9764007.706429578 10154752.380611898 9974565.615464006 8082340.16979013 8519396.259707855 8676254.222671783 7142570.049109132 8318784.892606832 0.9249651311944804 1.1328049759057204 1.173730037797607 1.220701401912285 1.1990411753919397 0.9715770120433288 1.024115465141948 1.0429713395261182 0.8586073737111487 1.0 22.987941381652718 2.728307896782546 24.8573164678047 0.9908563889107381 1.137831365805956 0.414400842736917 0.08888607281832439 691.6347780296483 1676838.3279789742 0.029504890631326323 0.028124125390990958 534.9434777393533 -2.728307896782546 0.14697497689521788 GIFEALRPLETLPVEGLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIFEALRPLETLPVEGLIR 19 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 188.38 1.4875e-14 1099960000.0 384780.0 497760.0 381070.0 460750.0 450200.0 430700.0 454890.0 372220.0 494610.0 495950.0 False True 382708.38723307714 514327.6406977257 434721.3436801821 519080.90275823843 507530.3014555407 400926.7227587446 432885.2328514479 399996.9464948617 372719.9929344428 464298.04639584327 0.8242730939832432 1.1077531871827628 0.9362980246304006 1.1179907104663742 1.0931131530603926 0.8635115436538567 0.9323434294237499 0.8615090018144059 0.8027602007540553 1.0 18.82469168499687 2.7253232352015555 24.664621375157232 0.8851477802991792 1.0222403579871595 0.29339639879702917 0.09555822862417884 744.2091463635232 1386649.3558671398 0.02944563252464081 0.02791494340188648 531.2797161546769 -2.7253232352015555 0.13709257768798033 GIFEPFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GIFEPFGR 8 0 Q14498-2;Q14498;G3XAC6;H0Y4X3;A0A0U1RQH7;A0A0U1RQW2;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 0 ;; 161.6 0.00080627 1204596000.0 1500620.0 1952020.0 1704590.0 1886630.0 1643630.0 1776800.0 1652520.0 1552950.0 1950740.0 1749420.0 False True 1492540.8286545575 2016991.805678992 1944581.4554381145 2125477.164559466 1852936.537941737 1653973.9981373083 1572581.2943605597 1668839.0147203167 1470006.265576788 1637770.5178461857 0.91132476277408 1.2315472672761971 1.1873345100847295 1.2977869252126102 1.1313773924679715 1.0098936206962814 0.9601963628143975 1.018969993986086 0.897565470594731 1.0 20.643301792018036 2.7371550344020537 3.451523957625757 0.9771767982784226 1.1692176940132484 0.4420227519298334 0.0983384141812421 0.2185507740771974 5.583484774904139 0.03203509389331869 0.0319871271536101 545.9527204579925 -2.7371550344020537 0.19204089573482575 GIFGFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GIFGFR 6 0 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 112.7 0.06226900000000001 675020000.0 583460.0 616710.0 625860.0 542220.0 530970.0 566410.0 510640.0 483790.0 637590.0 575670.0 False True 580318.7161884997 637236.8195409332 713975.6479273597 610864.9964049305 598585.882194244 527255.4098857226 485938.392365766 519892.8664358426 480464.4877682845 538930.2477441177 1.0767974494243513 1.1824105665033875 1.3248015878046484 1.1334769183246272 1.110692681844888 0.9783370150269644 0.9016721447716698 0.9646756117550225 0.8915151631949362 1.0 19.039739035456183 2.865242769719515 1.8897194755753395 0.9366914485635965 1.1918306699380543 0.7482885398187574 0.06464812605455149 0.16384884225672822 1.162691746113277 0.02340433158742109 0.025141899734946217 733.2342950586117 -2.865242769719515 0.25513922137445777 GIFLGDDEWR ddPTM_BT-474_Trastuzumab_2h_R1 4 GIFLGDDEWR 10 0 Q8TB72-3;Q8TB72;Q8TB72-2;C9JW01 Q8TB72-3 PUM2 Pumilio homolog 2 0 ;;; 141.2 8.8284e-05 496348000.0 590483.0 823190.0 689356.0 815163.0 751729.0 758401.0 739035.0 686021.0 835747.0 804051.0 False True 587303.9051368294 850589.381521136 786411.3328102333 918362.5522194548 847457.2323031359 705974.5239539241 703285.0536621371 737215.3705640538 629788.3502860469 752735.7767973052 0.7802258418427441 1.1299972815696 1.0447375520746587 1.2200330853501455 1.1258362607777803 0.9378782644790207 0.9343053370658586 0.979381335773242 0.8366658922014207 1.0 19.521784017422824 2.7232758174289295 23.562232927303985 0.9397001897618482 1.0720698845113186 0.22072254673625613 0.11398187260801339 551.1799079448274 849667.0129814302 0.036417794563118736 0.03447468262110681 528.7809703034143 -2.7232758174289295 0.13236969474947036 GIFPVLCK ddPTM_BT-474_Trastuzumab_2h_R1 1 GIFPVLCK 8 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 79.454 0.057363 0.0 227860.0 275180.0 248150.0 218780.0 224130.0 267220.0 266270.0 222740.0 292140.0 252940.0 False True 226633.22707762613 284339.19995017746 283087.363041534 246477.52556798104 252671.6269774107 248747.71036821912 253389.50284982086 239361.98985080194 220146.01147544125 236797.15264717097 0.9570775009077531 1.2007711949722824 1.1954846579736356 1.0408804447713689 1.0670382821447721 1.0504674891038683 1.070069889004842 1.010831368430568 0.9296818353363395 1.0 17.853292207909995 2.0905080548304458 0.7727699259826667 0.9691354234081114 1.1099947096640213 0.3126313034960696 0.07023692663876673 0.7574720729400781 0.8522914430064069 0.05954931876254437 0.032976761177316384 123.17088299450516 -2.0905080548304458 0.14085928625590982 GIFPVLCKDPVQEAWAEDVDLR ddPTM_BT-474_Trastuzumab_2h_R1 8 GIFPVLCKDPVQEAWAEDVDLR 22 1 P14618;P14618-3;B4DNK4;P14618-2;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;; 260.08 2.7724e-37 55989874000.0 4645267.0 5672499.0 5288736.0 5456258.0 5183000.0 6327302.0 6122543.0 5491233.0 7554326.0 6197180.0 False True 4620257.398609686 5861304.700116949 6033344.058282609 6147019.703357263 5843024.327952166 5889910.505606812 5826372.204704447 5901016.690376183 5692663.58008224 5801670.666727271 0.7963667129723477 1.0102787691365662 1.039932185893279 1.0595257911846974 1.0071278884308377 1.0152093843219332 1.0042576594564114 1.0171236923561802 0.9812110867874335 1.0 22.468036972242974 4.737956436609891 5.928384136824311 1.017297705877166 0.7902007657592162 0.9114932463919764 0.020434849680290537 0.035097928034335375 5.806307836037247 0.005037014459101679 0.03223712020347345 54696.10953429156 -4.737956436609891 -0.22709694011794979 GIGIENIHYLNDGLWHMK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIGIENIHYLNDGLWHMK 18 0 Q9ULC4-2;Q9ULC4;Q9ULC4-3;A0A3B3IRV3 Q9ULC4-2 MCTS1 Malignant T-cell-amplified sequence 1 0 ; 154.74 1.3798999999999997e-08 1220450000.0 580420.0 765990.0 734190.0 843390.0 719430.0 925950.0 891260.0 504620.0 1047840.0 842070.0 False True 577295.0832107237 791485.5140992674 837557.5703061202 950163.0875252746 811045.1461043084 861941.2559518454 848146.3488561666 542277.3068084398 789613.8723366424 788328.3716676031 0.7323028118213394 1.0040048570432467 1.0624475794704424 1.2052884580512202 1.0288163857259773 1.0933784536113094 1.0758795184068113 0.6878825198962771 1.0016306665029953 1.0 19.588437172007346 1.7761553526473717 24.999999988376803 0.8638384690392741 1.0384727513355205 0.1437119443175635 0.14011590600415086 66.35918387179433 44146.20270328898 0.0645010477253697 0.035808468783300317 59.72488918846085 -1.7761553526473717 0.17463428229624645 GIGT(ph)PQPDVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIGTPQPDVAK 11 0 Q9Y6X8;H0YKA3 Q9Y6X8 ZHX2 Zinc fingers and homeoboxes protein 2 1 GIGT(1)PQPDVAK;GIGT(1)PQPDVAK 129.77 0.0026609000000000003 689810000.0 1310870.0 1261750.0 1049390.0 1055160.0 1041820.0 1391530.0 1369370.0 1253960.0 1701330.0 1408700.0 True False 1303812.4215713488 1303746.5860060176 1197134.990538607 1188743.147812008 1174489.6016490685 1295336.8064092777 1303128.3415985992 1347536.8626798608 1282060.0181540092 1318795.559951254 0.9886387709855051 0.988588850006598 0.9077487268632115 0.9013854640638516 0.8905774612196 0.982211986259005 0.9881200552773822 1.021793599858396 0.9721446273305602 1.0 20.330789504266548 2.540821919075406 7.081499699117762 0.9979478151207344 0.9348381458406043 0.4335452263852494 0.03306708426648926 0.2630487264372499 25.21456444920755 0.011964046549531863 0.011202042774587714 347.39368467577333 -2.540821919075406 -0.06310966928013007 GIGTDEFTLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GIGTDEFTLNR 11 0 P12429;D6RA82 P12429 ANXA3 Annexin A3;Annexin 0 173.14 2.9158e-05 225670000.0 296990.0 272360.0 256860.0 246400.0 223600.0 280010.0 268540.0 273430.0 324900.0 286980.0 False True 295391.03883869125 281425.3379549035 293023.65533285646 277594.2147360387 252074.13461896664 260653.5677726404 255549.69427757876 293834.73504940677 244832.74843695134 268664.69070406083 1.099478454219613 1.047496554971188 1.0906667882741148 1.0332366862522098 0.9382480963850623 0.9701817052682787 0.9511845178013046 1.0936857176109949 0.9112948478467503 1.0 18.035447201841347 3.4733048871398733 6.484056597658013 0.9871865409979195 1.0740922262465584 0.4724147298942838 0.047835980090760066 0.14596442410640084 29.275293018974587 0.013687259258786185 0.019468543803500094 2973.752958687855 -3.4733048871398733 0.08690568524863895 GIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK ddPTM_BT-474_Trastuzumab_2h_R1 9 GIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 33 1 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;;;;;;; 335.34 2.212599999999999e-117 16443683000.0 7202710.0 8814461.0 8128237.0 8620395.0 7972546.0 9470555.0 8972697.0 8655563.0 11025705.0 9314643.0 False True 7163931.4096563095 9107845.005930811 9272622.117697464 9711736.123130986 8987802.47611765 8815877.824138492 8538653.36707884 9301485.06311834 8308567.739627687 8720174.509072911 0.8215353261798365 1.0444567360956536 1.0633528157091074 1.1137089186720295 1.0306906664271782 1.0109749311743712 0.979183771860849 1.0666627202747612 0.9527983334488356 1.0 23.05592557598405 4.740370712590432 24.78153296050971 1.0335190169544404 0.8215352451611031 0.6626741604362212 0.04432439905607683 83.63055000131857 1144860.7997956441 0.01061218273655256 0.06847009332437741 55001.01607177794 -4.740370712590432 -0.21198377179333727 GIHNSIGDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIHNSIGDYR 10 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 120.09 0.00060585 912580000.0 420880.0 720440.0 763960.0 764090.0 726920.0 775120.0 804470.0 642600.0 629230.0 770600.0 False True 418614.0288441639 744419.409884824 871518.9275406424 860823.7156560874 819488.9532076009 721537.7788362157 765554.7127261634 690554.0750566833 474164.697750024 721419.6482561475 0.5802642468306196 1.031881252034475 1.208060980384056 1.19323575083783 1.1359393318278916 1.0001637473838614 1.0611780737836867 0.9572155079584066 0.6572661264441565 1.0 19.460479190680797 1.47624710160486 5.04075081592758 0.819993318234553 1.0439188506193902 0.1550634973658679 0.18298582740830868 0.27466468325982724 15.102649757956948 0.11503823185964404 0.046987897534502665 29.939676372490755 -1.47624710160486 0.22392553238483714 GIHPTIISESFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIHPTIISESFQK 13 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 255.31 7.816200000000001e-24 2466800000.0 4186300.0 5236200.0 5332700.0 4959500.0 4685500.0 5859100.0 5850800.0 4985400.0 6870500.0 6011800.0 False True 4163761.425941656 5410483.751650262 6083497.807340677 5587372.191491011 5282170.651865698 5454074.207837853 5567774.451773511 5357435.863348254 5177357.334983293 5628121.77703907 0.7398136697980605 0.9613302565206209 1.0809108346161582 0.9927596475054423 0.9385316915876375 0.9690753725494577 0.9892775373994649 0.9519047518134509 0.9199085485508237 1.0 22.424222114179653 4.7324028796818585 5.202158847070889 0.9788423842604259 0.730286842450826 0.7499559119530079 0.0413952580946674 0.07546731676658495 6.9722920731784574 0.010361978544583539 0.06683773978042831 54001.133971467265 -4.7324028796818585 -0.24855554180959993 GIHVEVPPAEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 GIHVEVPPAEAER 13 0 P38117-2;P38117 P38117-2 ETFB Electron transfer flavoprotein subunit beta 0 89.62899999999998 0.005135 0.0 40285.0 59077.0 61773.0 61463.0 75716.0 91504.0 55132.0 37456.0 63806.0 65490.0 False True 40068.11003608428 61043.342232199335 70470.10145945869 69244.20949805657 85357.9837961077 85178.54385724678 52465.05453530753 40251.15691771413 48081.86625659616 61310.37213119014 0.6535290627554456 0.995644621134913 1.1493993432085003 1.129404488850432 1.3922274621569934 1.3893007153012256 0.8557288548672375 0.6565146404850697 0.7842370643862997 1.0 15.903843540845832 2.0442882155911826 11.371014175949089 0.7705846588720792 1.1268606343976744 0.31232270383573135 0.2114003936347261 0.7088792403085138 179.7281706072296 0.08412511019958202 0.06209107158515257 110.73584285511315 -2.0442882155911826 0.3562759755255952 GIIRPGTAFELLEAQAATGYVIDPIK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIIRPGTAFELLEAQAATGYVIDPIK 26 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 164.43 1.2578e-11 214723000.0 314240.0 343680.0 333390.0 310855.0 297676.0 331340.0 360850.0 323330.0 410490.0 380100.0 False True 312548.16675534623 355119.1810410526 380328.4141221716 350209.21112731897 335583.2741361161 308435.24569046317 343394.30691913416 347458.52643647225 309330.2397841922 355841.69258001796 0.8783348698946054 0.9979695703060347 1.0688135259379345 0.9841713841572052 0.9430690139285847 0.8667765810525575 0.965019878444725 0.9764413043261911 0.869291727850674 1.0 18.440876029883214 3.2369220554794413 5.414856635568122 0.9368748155578009 0.9900149027469638 0.12166326328741717 0.05881618871937855 0.3358663262554409 30.305076910093128 0.017109139311478276 0.02189295550718982 1725.5281769420014 -3.2369220554794413 0.053140087189162855 GIISILDEECLRPGEATDLTFLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GIISILDEECLRPGEATDLTFLEK 24 1 O00159-3;F5H6E2;O00159-2;O00159 O00159-3 MYO1C Unconventional myosin-Ic 0 171.06 6.5327e-12 118770000.0 55941.0 65425.0 70955.0 61874.0 54431.0 74988.0 67908.0 76577.0 88242.0 68609.0 False True 55639.81987162941 67602.63157475222 80944.84724808397 69707.24205591579 61362.46521218683 69804.2560627648 64623.03060624802 82291.564590127 66495.94148222047 64230.314880879894 0.8662548202483169 1.052503505550713 1.2602280932018233 1.0852701280570285 0.9553505276439682 1.0867805364526426 1.006114180291603 1.281195098338582 1.0352734780382495 1.0 15.970966748638748 GIITDS(ph)FGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GIITDSFGR 9 0 C9JUH3;A0A0A0MT72;Q9BSQ5-3;Q9BSQ5-4;Q9BSQ5;Q9BSQ5-2 C9JUH3 CCM2 Cerebral cavernous malformations 2 protein 1 GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR 184.71 4.5839e-05 939130000.0 1343150.0 1409770.0 1260550.0 1462480.0 1240940.0 1377800.0 1239260.0 1190910.0 1724490.0 1246310.0 True False 1335918.6296379934 1456693.3422260373 1438024.4831029845 1647629.8180485459 1398966.3533723631 1282555.9289923357 1179312.259367068 1279781.7515184467 1299512.546482112 1166769.4287803278 1.144972259887272 1.2484843245754038 1.2324838546774497 1.4121297468094285 1.1990084063436255 1.0992368306504605 1.0107500507618303 1.096859173672604 1.1137697941233737 1.0 20.15408806025739 2.7857194085743795 3.387084865012459 1.065461738218293 1.2605589801823887 0.6362932902914914 0.07030823182915494 0.16058700732161968 3.759258077503592 0.023028288481816987 0.02377887784543155 610.5474315244453 -2.7857194085743795 0.19509724196409572 GILAADES(ph)TGSIAK ddPTM_BT-474_Trastuzumab_2h_R1 3 GILAADESTGSIAK 14 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 1 GILAADES(0.765)T(0.233)GS(0.001)IAK;GILAADES(0.934)T(0.066)GSIAK;GILAADES(0.535)T(0.465)GSIAK 292.63 1.6958999999999999e-43 239844000.0 1109650.0 786542.0 676324.0 667249.0 534621.0 944150.0 803267.0 777429.0 1186650.0 902430.0 True False 1103675.7676937054 812721.57499532 771544.5404864091 751722.6549854184 602701.8154030705 878883.1327900365 764409.9064320687 835444.699684473 894216.0077953455 844836.1447908063 1.306378490668142 0.9619872208433526 0.9132475513076618 0.8897851490143759 0.713394921748179 1.0403001081442376 0.9048025598163152 0.9888837082027796 1.0584490416384427 1.0 19.68831203355902 4.738102893220027 4.30001515068523 0.9334131640052981 1.3342438974582225 0.5827487332997457 0.09279949486568445 0.14694825518906016 6.411208243791423 0.022560036754471897 0.1805463258673036 54714.557748531945 -4.738102893220027 0.4008307334529244 GILAADESTGSIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GILAADESTGSIAK 14 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ; 257.8 5.4331e-24 345570000.0 390540.0 367520.0 348060.0 295820.0 302610.0 471500.0 428990.0 364100.0 529790.0 435170.0 False True 388437.3760330727 379752.6810294681 397063.8226082465 333270.7816688919 341145.5897900072 438906.3147916141 408238.11479905626 391270.99086233793 399230.35332229134 407397.0780322192 0.9534613697017065 0.932143850573801 0.9746359117893441 0.8180490230284249 0.8373785875877773 1.0773428148075794 1.0020644153141682 0.9604167824477967 0.9799538947373551 1.0 18.636076107358324 2.7433074443813084 24.998306525221352 0.9979706828902918 0.903990836566174 0.4730055859322112 0.05301844945110046 424.21981898459285 2234077.479114894 0.017801629304718174 0.018323812757116274 553.7419737690215 -2.7433074443813084 -0.09397984632411782 GILADEDSSRPVWLK ddPTM_BT-474_Trastuzumab_2h_R1 4 GILADEDSSRPVWLK 15 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 225.32 9.2605e-13 48515100000.0 13064110.0 13453960.0 13242550.0 12337780.0 12466500.0 14467050.0 14382450.0 13585330.0 16279160.0 14508890.0 False True 12993774.283319086 13901766.925509432 15106985.933691971 13899741.682978923 14054034.880265426 13466976.88527257 13686715.94720549 14599136.309507927 12267379.1475681 13582920.21851434 0.956625973964552 1.0234740911280982 1.112204569463659 1.0233249889837928 1.034684342849112 0.9914640348778805 1.0076416357470517 1.0748157299494716 0.903147404992258 1.0 23.695290344961897 2.7632300302758854 22.285762660851077 1.0072060123307809 1.0338858784371945 0.0738050016941707 0.05293645241383557 679.0365689121244 613422.8134961844 0.016426616657983534 0.01741026699962803 579.7356804046614 -2.7632300302758854 0.026679866106413597 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK ddPTM_BT-474_Trastuzumab_2h_R1 15 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK 38 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;;;;;;;;;;; 346.86 1.5319999999999991e-145 7128911000.0 1315379.5999999999 2262559.6999999997 2491522.2 2524426.5999999996 2539038.9 3191154.5 2969627.8 2062754.1 2669910.8000000003 2808033.1 False True 1308297.7423860112 2337867.631868277 2842306.869060815 2844018.7487247055 2862370.4538523834 2970557.5005846806 2825975.5582341533 2216687.285395085 2011947.0583117844 2628822.023479911 0.49767452140185137 0.8893213808265034 1.0812093187268352 1.08186051521279 1.0888414766334436 1.1299956688024075 1.074996912302667 0.8432245567011564 0.7653416778852391 1.0 21.32598504124038 4.701807653000022 2.9959696277663603 1.006876322735025 0.4355906629836316 0.6540022484721384 0.1112889064915815 0.22854984183076155 3.147868718286871 0.030712184712579898 0.29800958295490093 50327.76600923004 -4.701807653000022 -0.5712856597513934 GILHLS(ph)PDVYQEMEASR ddPTM_BT-474_Trastuzumab_2h_R1 4 GILHLSPDVYQEMEASR 17 0 E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;H0YBY0;E5RJN7;E5RJ67 E7EPX0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR 165.66 1.5727e-09 238711000.0 268733.0 334416.0 292919.0 335518.0 319992.0 362454.0 325089.0 266022.0 338025.0 322805.0 True False 267286.1713870432 345546.83440125943 334159.44910241006 377994.5443985644 360741.0844588213 337398.40810494137 309363.2031094205 285873.91247234464 254723.2680529405 302203.3085327355 0.8844581241839383 1.1434250540768942 1.1057438474940222 1.250795519856524 1.1937032926949072 1.1164616619953167 1.0236923103570503 0.9459655285057145 0.8428870924334971 1.0 18.205159929703424 1.9546859200218567 2.1831705519578692 0.9190277028919175 1.1265986305604327 0.42865658050672706 0.09606789971244183 0.28531186756390886 2.5074854028816245 0.05601978168600509 0.028688342329699495 90.09193607871684 -1.9546859200218567 0.20757092766851526 GILLEDGSES(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 6 GILLEDGSESPAKR 14 1 Q08999;Q08999-2 Q08999 RBL2 Retinoblastoma-like protein 2 1 GILLEDGS(0.011)ES(0.989)PAKR;GILLEDGS(0.017)ES(0.983)PAKR;GILLEDGSES(1)PAKR;GILLEDGSES(1)PAKR;GILLEDGS(0.007)ES(0.993)PAKR;GILLEDGS(0.001)ES(0.999)PAKR 211.12 2.6242e-09 2008430000.0 2093080.0 1725290.0 1474990.0 1540840.0 1516190.0 2054770.0 1964000.0 1800190.0 2707950.0 2127320.0 True False 2081811.0898430485 1782715.2346901705 1682655.771157089 1735910.1860141144 1709267.8093377962 1912728.5863083035 1868993.8167914078 1934529.3189795967 2040612.0071709524 1991552.616309716 1.0453206572571399 0.8951384061313357 0.8448964679000031 0.8716366174802357 0.8582589258952221 0.9604208147171774 0.9384606771045769 0.9713674161239176 1.024633740760584 1.0 20.925462165163022 1.8562133236318323 1.213891706643641 1.0101035456555378 0.901391672308109 0.34691113670225815 0.0546081657961999 0.511002251439293 1.394946029982428 0.04446673844216562 0.018682165477601317 71.81469554294955 -1.8562133236318323 -0.10871187334742882 GILQVLPDEITFPLS(ph)PLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 GILQVLPDEITFPLSPLRK 19 1 A0A0U1RR07;Q9HCH5-7;Q9HCH5-8;A0A0U1RQP0;A0A0U1RRJ3;Q9HCH5-11 A0A0U1RR07 SYTL2 Synaptotagmin-like protein 2 1 GILQVLPDEITFPLS(1)PLRK;GILQVLPDEITFPLS(1)PLRK 245.41 8.605899999999998e-25 828120000.0 822040.0 911080.0 880220.0 847900.0 839260.0 972690.0 948670.0 809660.0 1080550.0 908050.0 True False 817614.2279772299 941404.7470405096 1004147.3249906051 955244.0530628534 946134.7863162515 905450.2297659715 902779.2078286698 870080.9405701741 814262.9311281851 850097.4715792834 0.9617888010633566 1.1074080073330868 1.1812143413685645 1.1236876770004176 1.112972121371627 1.065113425268582 1.0619714068217565 1.023507267882783 0.9578465509554733 1.0 19.697268743571804 1.797768020619112 1.3294105578911528 0.9795415515158394 1.1015233282310304 0.41200154583487225 0.05359073631958322 0.41201700676771424 1.3684649215550366 0.043562371436818334 0.017598500299798467 62.7722969601264 -1.797768020619112 0.12198177671519095 GILSLPHQAS(ph)PVSR ddPTM_BT-474_Trastuzumab_2h_R1 5 GILSLPHQASPVSR 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 GILSLPHQAS(0.985)PVS(0.015)R;GILSLPHQAS(1)PVSR;GILSLPHQAS(1)PVSR;GILSLPHQAS(1)PVSR;GILSLPHQAS(1)PVSR 214.34 4.4519e-12 2313390000.0 1100200.0 1404330.0 1281040.0 1369360.0 1343680.0 1310410.0 1357140.0 1149880.0 1290610.0 1371060.0 True False 1094276.645443711 1451072.2751145875 1461399.2970007116 1542720.835596357 1514789.6833846758 1219824.4410733392 1291489.9534217387 1235689.8845723295 972556.4587879768 1283557.7769764774 0.8525339996937005 1.1305079530838915 1.1385535760167758 1.2019099282233783 1.1801491997912892 0.9503463443201855 1.0061798359119807 0.9627068658203259 0.7577036859835877 1.0 20.29171680694486 2.225412028425998 1.4352207994023627 0.9062359489450161 1.1045357076687954 0.3321505793141739 0.11280533823716646 0.4769919526658403 1.9190615211254212 0.06755420257189741 0.03931902421293349 168.03975064935327 -2.225412028425998 0.19829975872377925 GILTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GILTLK 6 0 C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;Q6S8J3;A5A3E0;P0CG38;P0CG39 C9JTX5;P60709;P63261;P68133;Q6S8J3 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ; 142.63 0.026758 4370200000.0 5661600.0 5888900.0 5593700.0 5656100.0 5238700.0 6570900.0 6436300.0 5672500.0 7505600.0 6265400.0 False True 5631118.574662895 6084908.476584775 6381244.338687997 6372161.680067008 5905817.392792397 6116669.149234815 6124951.57994631 6095810.754371348 5655945.449887291 5865536.807921196 0.9600346496945126 1.0374001009365972 1.0879216255314188 1.0863731468638358 1.0068673313611813 1.0428148947892497 1.0442269446975054 1.0392588017074882 0.9642673185937798 1.0 22.483831717592672 1.2509326210680372 24.0113331710256 0.9821336732955825 1.0406655839149337 0.28197379419371704 0.03554482110729411 149.28227686031366 289730.21442902164 0.02443695822300953 0.008767957539016786 17.821022604531958 -1.2509326210680372 0.058531910619351146 GIMVLAGDTLPIEVYCHLPVMCEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIMVLAGDTLPIEVYCHLPVMCEDR 25 0 D6RC52;D6RCB9;Q9NX24;H0YC83 D6RC52 NHP2 H/ACA ribonucleoprotein complex subunit 2 0 ; 265.23 2.4803e-45 900490000.0 183760.0 262050.0 211680.0 244630.0 254990.0 207311.0 194300.0 196056.0 260070.0 228010.0 False True 182770.6565776551 270772.17583742965 241482.70404445656 275600.13291752123 287461.4650558604 192980.07852760187 184900.96670192003 210686.69427219548 195979.23325945792 213458.2065908177 0.8562362604685977 1.2685020649333865 1.1312879832601592 1.2911198745608532 1.346687342908774 0.9040649296633942 0.8662162474566293 0.9870161360254704 0.9181152432107444 1.0 17.70359410378404 2.7185403760756577 24.575268929109534 0.9329501079387674 1.1873561431451038 0.4677968096613393 0.12978778999214097 562.0846110956631 689969.7346347066 0.04134586183797283 0.039030432986946854 523.0465912233668 -2.7185403760756577 0.2544060352063364 GINLSSGDQNLAPEIGMQEIALHSGEEPHAEEHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GINLSSGDQNLAPEIGMQEIALHSGEEPHAEEHLK 35 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 0 70.679 0.0015694 60365000.0 61801.0 71750.0 54485.0 56823.0 61218.0 71614.0 60093.0 9768.3 73612.0 41786.0 False True 61468.27028273662 74138.15537620916 62156.01440789027 64016.78597380657 69013.74943248623 66663.49274122306 57186.07201244712 10497.260148422332 55471.3089502642 39119.18170520554 1.5713076706447855 1.8951867637441837 1.588888409688264 1.6364551399930722 1.7641920516783882 1.7041126586845816 1.4618422349268476 0.26834048389681614 1.4180079064098292 1.0 15.255588571869524 1.9457697683837714 8.141598005207875 0.8237560759954271 1.689280406300575 0.62110502257924 0.2771017841225489 0.18314914088360623 25.428164117578294 0.10988501772446672 0.06937669723984566 88.2611879203002 -1.9457697683837714 0.865524330305148 GIPDDRDGLFDTIQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GIPDDRDGLFDTIQR 15 1 Q93008;Q93008-3;O00507;H7C2M9 Q93008 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y 0 ;; 196.64 8.0527e-09 1314390000.0 405451.0 481348.0 444188.0 502830.0 533912.0 486209.0 451963.0 400968.0 491669.0 493200.0 False True 403268.0968658411 497369.3771989893 506725.80944869213 566488.2264436786 601902.5284556434 452598.51624287607 430099.82302367367 430890.2682342481 370503.7629770614 461723.5537502366 0.8733972819675206 1.0772016570504759 1.0974658003321158 1.2268991301018035 1.3035993584620873 0.9802370110139614 0.9315093837650107 0.9332213285080376 0.8024363495596775 1.0 18.816669804424087 2.494277173771907 21.28587546254723 0.9195032618662058 1.1210547155458779 0.4105663653202287 0.11351477347163806 107.65057791210332 133566.25158849682 0.03913849487832199 0.035979775590544494 312.0880745266118 -2.494277173771907 0.2015514536796721 GIPDEWR ddPTM_BT-474_Trastuzumab_2h_R1 4 GIPDEWR 7 0 Q6NZY4;Q6NZY4-2;F5GX80;F5H6J5 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 0 ;;; 140.12 0.0061558 683670000.0 1154880.0 1478770.0 1342060.0 1425390.0 1391880.0 1330790.0 1365450.0 1219430.0 1425160.0 1355270.0 False True 1148662.2543992307 1527989.9655146573 1531010.3826053625 1605844.2278514695 1569127.6676808929 1238795.6196426998 1299397.9669744535 1310430.058740072 1073948.4141656065 1268775.5082949777 0.9053313583762669 1.2043028538342615 1.206683430280574 1.2656645855415793 1.2367260066278694 0.9763710061738456 1.024135442778705 1.0328305127051758 0.8464447864451716 1.0 20.27500539680089 2.7284954545512248 24.83439502975501 0.986534694136441 1.1740430875792256 0.4418677615262222 0.10487020971875977 618.6535047886159 1526439.5739726848 0.034117153485097675 0.03250927561137892 535.1745524538729 -2.7284954545512248 0.18750839344278458 GIPHLVTHDAR ddPTM_BT-474_Trastuzumab_2h_R1 7 GIPHLVTHDAR 11 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 0 ;;;;;; 169.65 9.619e-06 8364660000.0 3002360.0 3854450.0 3649800.0 3583350.0 3042450.0 3242190.0 3582530.0 2190860.0 4326470.0 3077580.0 False True 2986195.627353554 3982743.0381857753 4163660.115369693 4037001.742590845 3429887.9734860277 3018065.036594324 3409229.337306378 2354353.098161664 3260269.440227808 2881166.2095512035 1.036453786475134 1.3823371331312966 1.4451301356953865 1.401169335253201 1.1904512700849348 1.047515074482442 1.18328103599321 0.8171528217833706 1.131579785095306 1.0 21.458221458832234 2.8069284026358368 1.8745795927141375 1.0054560018632372 1.3293908647962318 0.4684625150123377 0.13873544213964345 0.2789254146212907 1.9425437606387133 0.051380518471033296 0.05298860281806752 641.1038761136359 -2.8069284026358368 0.32393486293299456 GIPILSLDWLHQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIPILSLDWLHQSR 14 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 0 ; 254.89 2.8785e-24 267650000.0 74002.0 151854.0 165825.0 176181.0 154036.0 184851.0 164820.0 138181.0 150239.0 179304.0 False True 73603.58145439516 156908.3685923184 189171.71862326143 198485.49653575488 173651.57155709807 172072.68546244907 156847.0269264563 148492.76788890056 113214.61154945855 167860.6652101225 0.4384802202604201 0.934753644612963 1.1269568030512833 1.1824419752376008 1.034498292615049 1.0250923600657371 0.9343882125697544 0.8846192030933642 0.6744558733145744 1.0 17.356904677584517 -3.170728750211339 9.813495445224738 0.9996025293756035 0.937471925174524 0.0 0.20925977510634225 0.0 0.0 0.0 0.04677839071181634 0.0006749494531187229 3.170728750211339 -0.06213060420107941 GIPLATGDT(ph)SPEPELLPGAPLPPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GIPLATGDTSPEPELLPGAPLPPPK 25 0 O75821;K7ENA8;K7ER90;K7EL20;K7EL60 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 GIPLAT(0.074)GDT(0.508)S(0.417)PEPELLPGAPLPPPK 114.02 0.007022199999999999 18073000.0 74797.0 71450.0 71229.0 66305.0 65235.0 87560.0 77584.0 79322.0 100050.0 83616.0 True False 74394.30126272797 73828.17005756294 81257.42406643329 74699.20620159512 73542.29057186171 81507.18329406941 73830.9655203385 85241.41042895456 75394.01810131413 78279.55529274089 0.950366937887124 0.9431347659228368 1.0380414625831242 0.9542620154425203 0.9394827333501922 1.0412320686960754 0.9431704771984708 1.0889358033547654 0.9631380482344878 1.0 16.256347939566545 2.738354301054665 24.999913967342753 1.0136958005420498 0.9672945553414224 0.16796048894827786 0.04577717462481642 32.17847719074884 3899086.248737252 0.014094659247504663 0.014124621888240617 547.462405152345 -2.738354301054665 -0.04640124520062738 GIPLATGDTS(ph)PEPELLPGAPLPPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GIPLATGDTSPEPELLPGAPLPPPK 25 0 O75821;K7ENA8;K7ER90;K7EL20;K7EL60 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 GIPLAT(0.027)GDT(0.132)S(0.841)PEPELLPGAPLPPPK;GIPLAT(0.014)GDT(0.11)S(0.875)PEPELLPGAPLPPPK;GIPLAT(0.009)GDT(0.204)S(0.787)PEPELLPGAPLPPPK;GIPLAT(0.036)GDT(0.137)S(0.827)PEPELLPGAPLPPPK 190.37 5.6054999999999984e-18 1115000000.0 1664510.0 1685880.0 1583230.0 1563400.0 1551500.0 1804380.0 1736550.0 1747690.0 2274590.0 1961090.0 True False 1655548.4631044473 1741993.4966640198 1806135.0223181436 1761326.2797009884 1749074.3285390274 1679647.4576536438 1652546.4422347879 1878111.502389998 1714047.7724444566 1835931.5572263803 0.9017484647442711 0.9488335716042287 0.9837703454734165 0.9593638024076991 0.952690377620301 0.9148747680938382 0.9001133161692366 1.0229746827966402 0.9336120214818581 1.0 20.808080846000408 1.7366773263049053 24.9999999943195 0.9854309339995122 0.9401426017260069 0.3141068575597148 0.03244645372486736 0.3213925508099042 4153.487162949337 0.015211901489968547 0.008435804889854424 54.535252252756244 -1.7366773263049053 -0.04528833227350526 GIPNERPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIPNERPTR 9 1 Q96F86;H3BPW9;H3BSQ0;H3BPN4 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 ; 119.68 0.00071852 312280000.0 107254.0 145928.0 121327.0 125187.0 115317.0 115747.0 118042.0 98358.0 141129.0 131492.0 False True 106676.55638103973 150785.12526466115 138408.78700681112 141035.66136428787 130001.93641259121 107745.6823291303 112331.8574957696 105697.97341180379 106349.64898171264 123100.0679840349 0.8665840574099019 1.2248987976531156 1.124359955875586 1.145699297116384 1.0560671374239323 0.875269072500464 0.9125247397128825 0.8586345657056175 0.863928434186611 1.0 16.90947203301144 2.8277666540288 3.959581442399077 0.8911150347258555 1.102138343085121 0.4818505553860051 0.09368998598381874 0.17597305532251084 5.0829408682291595 0.028083874306663866 0.02972196430724235 672.6151637537706 -2.8277666540288 0.21102330835926553 GIPNMLLSEEETES ddPTM_BT-474_Trastuzumab_2h_R1 4 GIPNMLLSEEETES 14 0 F5GYQ2;Q9UI30;Q9UI30-2 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 0 ;;; 152.04 1.5759e-05 50448000.0 91898.0 118554.0 109936.0 127805.0 118204.0 118072.0 119736.0 98930.0 118988.0 120421.0 False True 91403.23137882772 122499.99822259348 125414.03321915815 143985.0998958583 133256.57875000162 109909.96055159169 113943.91224406128 106312.65895636106 89665.00175751281 112735.628682395 0.8107750180409595 1.0866129869884098 1.1124613814190139 1.27719250407962 1.1820271932435784 0.9749354470824486 1.0107178500336422 0.9430262659542257 0.7953563820548868 1.0 16.782584007694744 2.1381851717476517 1.594479372412593 0.9082264921227723 1.0985055198331093 0.26180408239526853 0.12393230161534177 0.5202422866896491 2.5455470292301983 0.07651102055103473 0.042134964321310496 137.46279552957225 -2.1381851717476517 0.190279027710337 GIPVLVGLLDHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GIPVLVGLLDHPK 13 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 0 161.99 1.0719e-06 0.0 280580.0 287930.0 290290.0 263380.0 296430.0 360570.0 327740.0 299250.0 408180.0 311080.0 False True 279069.3884553683 297513.5759926393 331160.30875408754 296723.88099504035 334178.6034217368 335644.64459048206 311885.96411161695 321581.55456070986 307589.50833177776 291226.60807101295 0.9582551206561447 1.0215878897991812 1.1371224317296487 1.0188762728805567 1.14748650762107 1.1525205296785181 1.0709391088178537 1.104231363647566 1.0561861444225416 1.0 18.151782648580582 4.462406501345599 4.43019879056866 1.0915211533788942 0.9690665880664947 0.39725192415116506 0.0496629811707287 0.15841756371273416 7.55548720406439 0.011478639792782372 0.04001319902782016 29000.56782293386 -4.462406501345599 -0.12245456531239951 GIPVVEHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIPVVEHK 8 0 Q02880;Q02880-2;E9PCY5;P11388;P11388-2;P11388-3;P11388-4;J3KTB7 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2;DNA topoisomerase 2-alpha 0 ; 93.429 0.011075 696360000.0 709670.0 954410.0 934500.0 873550.0 911610.0 1129340.0 1134820.0 1025410.0 1382230.0 1017830.0 False True 705849.21557175 986176.9598969725 1066069.4771803888 984141.3404329015 1027698.1299642046 1051271.3839804078 1079924.421166611 1101931.3011264766 1041597.9374330771 952871.2179918967 0.7407603485592452 1.034953035915247 1.1187970179507036 1.0328167352004862 1.078527833100049 1.103267014608629 1.13333722414501 1.1564325591119362 1.0931151217141024 1.0 19.86192171929711 4.740264033084323 2.8379080186294297 1.0983974708571216 0.6752154040102314 0.8461212221804549 0.04423495857821241 0.15049946607966297 1.6872631136334153 0.011243454199377893 0.14757313004355657 54987.507356163354 -4.740264033084323 -0.4231820668468902 GIQFLQEQGMLGTSVEDIAQFLHQEER ddPTM_BT-474_Trastuzumab_2h_R1 1 GIQFLQEQGMLGTSVEDIAQFLHQEER 27 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 159.56 1.4688e-11 128920000.0 62237.0 77591.0 91855.0 73414.0 81511.0 74747.0 73144.0 76956.0 92968.0 73293.0 False True 61901.92290718074 80173.56953024998 104787.38558202745 82708.20487269302 91890.94269645176 69579.91582551174 69605.74528278554 82698.84749465005 70057.28210737604 68615.37799070572 0.9021581563766311 1.168448996099823 1.5271705651205683 1.2053887524148923 1.3392179040228975 1.014057167111091 1.0144336054260894 1.20525237805805 1.0210142996933667 1.0 16.066244327151956 2.7299524521507954 24.86380855971416 1.0721696492746937 1.240453414142157 0.23628315169884917 0.15654579710573202 967.3479949238141 2794081.4699682132 0.05202260917511186 0.049764889924670534 536.9730037533094 -2.7299524521507954 0.16828376486746333 GIQLS(ph)PGVGSSAGPPGDLEDDEGLKHLQQEAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GIQLSPGVGSSAGPPGDLEDDEGLKHLQQEAEK 33 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 GIQLS(1)PGVGSSAGPPGDLEDDEGLKHLQQEAEK 269.3 1.1256999999999996e-60 180970000.0 402840.0 334200.0 297970.0 317670.0 289950.0 376280.0 388050.0 323080.0 622120.0 372050.0 True False 400671.1541997316 345323.64497183345 339921.5859983315 357886.9894285612 326873.41383170575 350268.64926784416 369278.53900504386 347189.8701669979 468806.86198090465 348305.45047196944 1.1503441983374199 0.9914391075531678 0.9759295627953067 1.0275090124016386 0.9384676966403417 1.00563642858076 1.0602146435109039 0.996797120735665 1.3459647597981899 1.0 18.409993523609955 1.315983558366067 24.999999999993864 1.1730535181096724 1.0144840534184043 0.30073455561505247 0.09420847737334696 31.44157521228043 10150.728717254151 0.056679940574837266 0.02069771277476869 20.70062978322636 -1.315983558366067 -0.1585694646912681 GIQYLQEQGMLGTTPEDIAQFLHQEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GIQYLQEQGMLGTTPEDIAQFLHQEER 27 0 Q9Y6D6;E5RIF2 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 ; 199.1 5.361299999999999e-25 363730000.0 131769.0 150798.0 157005.0 168348.0 143752.0 154656.0 149877.0 140008.0 168180.0 166644.0 False True 131059.5703449122 155817.2202706842 179109.93928807572 189660.83953889078 162057.9651151417 143964.99474106444 142626.87692425968 150456.10790621856 126734.29249654179 156008.6372488938 0.8400789382950751 0.9987730360216902 1.1480770709016992 1.2157073023867824 1.0387755958447153 0.9228014376626141 0.914224234243614 0.9644088337633716 0.812354333269073 1.0 17.251266378980727 2.7747750074404287 5.052936656818283 0.923178096276629 1.06166279654281 0.270909517450604 0.1021913731383666 0.27301144485942386 18.18952573532615 0.03387560650147505 0.03518573389789629 595.3536320316211 -2.7747750074404287 0.1384847002661811 GIRPAINVGLSVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIRPAINVGLSVSR 14 1 P25705;P25705-2;P25705-3 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial 0 ; 121.18 0.00070545 0.0 459300.0 517780.0 506960.0 422540.0 472190.0 572730.0 507300.0 368400.0 505820.0 475100.0 False True 456827.17983302695 535013.9942953803 578335.5614246872 476033.52067599824 532320.5976105985 533138.5231614022 482759.9609258051 395891.8786972951 381167.4386407467 444778.7112464257 1.0270886809146895 1.202876803154728 1.3002770744219938 1.0702704707740747 1.196821215023646 1.1986601644385393 1.085393587235645 0.8900872921454973 0.8569822003678684 1.0 18.76272821143209 1.8815221759721172 3.2710932966899215 0.9050492872543993 1.1699310547227217 0.6658374077290853 0.0789214781188116 0.13763264543967096 2.5338664597819927 0.03996864822230358 0.021448849487472506 76.124100854953 -1.8815221759721172 0.2648817674683225 GIS(ph)PIVFDR ddPTM_BT-474_Trastuzumab_2h_R1 12 GISPIVFDR 9 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 1 GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR 218.43 5.558600000000001e-07 53860787000.0 14260500.0 17492600.0 15086370.0 15322050.0 14983860.0 15184390.0 14794150.0 13772860.0 14922260.0 14876680.0 True False 14183723.052490504 18074830.616500013 17210399.762921244 17261819.958994824 16891965.754703715 14134728.859509315 14078500.44535877 14800660.75036599 11244868.971039647 13927237.545833461 1.0184161077035536 1.297804432287246 1.2357367860125277 1.2394288459708906 1.2128726676136286 1.0148982390077728 1.0108609405869264 1.062713312791439 0.8074012476654938 1.0 23.73140579335324 2.703423412591237 4.263289019320868 0.9893317151004686 1.2113651611463387 0.5889690211764114 0.09237040680764332 0.15477693940723578 6.514957708293025 0.02961565260631168 0.02870494228982754 505.15355374776783 -2.703423412591237 0.22203344604587016 GIS(ph)SSNEGVEEPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GISSSNEGVEEPSK 14 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 1 GIS(0.857)S(0.142)S(0.002)NEGVEEPSK;GIS(0.992)S(0.008)SNEGVEEPSK 328.0 2.5491e-68 924770000.0 1093480.0 1045380.0 962050.0 1026560.0 941080.0 1287790.0 1121280.0 1093850.0 1510610.0 1160530.0 True False 1087592.825177048 1080174.8413544442 1097498.277711495 1156522.3907444323 1060920.9597818311 1198768.108431587 1067039.402694435 1175478.6414577535 1138340.406636944 1086463.98182028 1.0010390067003205 0.9942113677295599 1.0101561543464406 1.0644829558056543 0.9764897663743499 1.1033666357012137 0.9821212857021725 1.0819306126359909 1.0477479471797577 1.0 20.051208916774257 3.940458724396261 6.628887754661805 1.0394470827398719 0.998615366704014 0.14359388160753983 0.039267464086761614 0.3687365036268957 33.675348975319146 0.009301680000814504 0.017164564798953574 8718.840329764147 -3.940458724396261 -0.04083171603585789 GISDLAQHYLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 GISDLAQHYLMR 12 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 156.69 6.5595e-05 2469900000.0 1822750.0 2458800.0 2642700.0 2271990.0 1628110.0 1856210.0 2230720.0 1703740.0 2808700.0 2109760.0 False True 1812936.5165265647 2540639.6716240156 3014769.1892398205 2559623.701047619 1835440.1579359837 1727894.5717483389 2122811.5514220637 1830881.7302164193 2116533.519651786 1975113.3105435907 0.917889878443282 1.2863260340870168 1.5263778402719061 1.2959376494420765 0.9292834735799709 0.8748331361671537 1.074779629143314 0.9269755413235122 1.0716010612420377 1.0 20.913503991155732 3.2416830153823923 24.990469209120665 0.9744027102146822 1.278021343224599 0.4462352120652362 0.15038054101857254 70.82397842340562 566842.4833430212 0.04321117756434348 0.0561206550200289 1744.5483700812922 -3.2416830153823923 0.30361863300991687 GISEETTTGVHNLYK ddPTM_BT-474_Trastuzumab_2h_R1 4 GISEETTTGVHNLYK 15 0 P23526;P23526-2 P23526 AHCY Adenosylhomocysteinase 0 ;;; 274.45 1.7714e-33 4141020000.0 3096160.0 3450190.0 3380130.0 3200460.0 3217010.0 3621170.0 3785770.0 3332320.0 4376640.0 3857950.0 False True 3079490.618575717 3565027.488466105 3856022.9233833537 3605637.907849443 3626677.154787843 3370847.0412172815 3602637.8420541817 3580994.639578099 3298075.7159713656 3611732.328042831 0.852635339187627 0.9870685767009664 1.067638067595364 0.9983126046894261 1.004137855573896 0.9333047787192792 0.9974819601336355 0.991489488790165 0.9131561855688699 1.0 21.78425954538916 4.73734382444404 7.429908020129563 0.9899826090394721 0.8511072972641365 0.5141212431200548 0.03946576105916702 0.07867350413440156 41.4375644106363 0.009474376948878548 0.05574487628759171 54619.01005012224 -4.73734382444404 -0.13887531177533563 GISHVIVDEIHER ddPTM_BT-474_Trastuzumab_2h_R1 8 GISHVIVDEIHER 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;;;;; 247.14 1.7489000000000003e-17 21619600000.0 2882790.0 3479990.0 3213140.0 3552860.0 3390750.0 3245320.0 3117060.0 2590470.0 3462660.0 3265570.0 False True 2867269.37894808 3595819.3634516182 3665522.1828864547 4002651.7117170575 3822541.9139501844 3020978.6670615524 2966275.8994744527 2783784.0255401284 2609333.8402668303 3057158.526804865 0.9378870457021264 1.1761965668197538 1.1989964376225561 1.3092718864992448 1.2503577686385947 0.9881655270977638 0.9702721901616935 0.9105788925017084 0.8535160402669499 1.0 21.54375993342522 2.5934312649415108 4.165485670851005 0.9308075001846376 1.1827513984668339 0.5864278545636046 0.09707914951270116 0.16725025087965498 4.900140637065152 0.03408015786775416 0.031708659099480216 392.13107949359204 -2.5934312649415108 0.2519438982821962 GISLNPEQWSQLKEQISDIDDAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GISLNPEQWSQLKEQISDIDDAVR 24 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ; 248.79 3.492699999999998e-38 4590400000.0 370650.0 232040.0 492380.0 569270.0 435580.0 635910.0 623140.0 515410.0 275850.0 530530.0 False True 368654.461583086 239763.31112885787 561702.8241563187 641339.523631432 491048.53111506964 591951.0384711253 592996.337574032 553872.5113989497 207870.4637006247 496671.1211904154 0.7422506480737181 0.4827405921129379 1.1309351403601564 1.291276050224698 0.9886794503737814 1.1918370390699264 1.1939416492602701 1.1151695513752333 0.41852738126268196 1.0 18.921931338533078 4.233422795465785 24.998658293487654 1.0680576219661706 0.6124955729391518 0.3425403103357345 0.235300424327759 113.70598487582973 553260.3176462869 0.05730783670147737 0.13002514578273372 17116.808641311956 -4.233422795465785 -0.4555620490270188 GISLNPEQWSQLKEQISDIDDAVRKL ddPTM_BT-474_Trastuzumab_2h_R1 1 GISLNPEQWSQLKEQISDIDDAVRKL 26 3 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 297.57 2.2881999999999996e-70 328730000.0 459800.0 279410.0 340870.0 317860.0 334730.0 406900.0 444830.0 449060.0 578280.0 520180.0 False True 457324.4878885826 288709.9929430883 388861.533104846 358101.04340907966 377355.8813998513 378771.9607395715 423311.8734843802 482571.1374804759 435770.64255500195 486981.66705149674 0.939100008954181 0.5928559789347432 0.7985137006476368 0.7353480996055887 0.7748872430549775 0.7777951129719172 0.8692562823717476 0.9909431301639647 0.8948399334895714 1.0 18.893507935960585 2.0771961177274343 2.4647290857965394 0.9600195830764726 0.7595222134775642 0.5157030189299763 0.08346924802513087 0.2120865817471857 2.5072376479315204 0.03815859640613077 0.02282778466293325 119.45274046916029 -2.0771961177274343 -0.2004973695989084 GISPIVFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GISPIVFDR 9 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 128.69 0.0029284000000000003 0.0 35799.0 43293.0 42090.0 40972.0 42058.0 40195.0 40791.0 40142.0 43886.0 38879.0 False True 35606.26216164283 44733.98133382885 48015.906147161666 46159.050999046194 47413.83700270352 37416.41425885245 38817.78349324762 43137.59987694578 33070.88334227157 36397.70893401348 0.9782555881798636 1.2290328881669024 1.3192013330897057 1.2681856180214353 1.302659930839645 1.0279881716370065 1.0664897497702828 1.1851734941655603 0.9085979395633607 1.0 15.151560021908535 2.7300351305060495 24.95171013684053 1.0626342408458325 1.2282458849385893 0.39387482052030576 0.11035516206507166 720.5488361954718 2108841.261981298 0.03628056526874192 0.03468884731628598 537.0752391553457 -2.7300351305060495 0.16561164409275686 GISQEQMQEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GISQEQMQEFR 11 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ; 256.38 3.983e-20 472940000.0 275980.0 284970.0 266290.0 279040.0 266390.0 244000.0 266380.0 268100.0 284350.0 287900.0 False True 274494.1543442602 294455.05418199714 303781.3173658274 314366.43538938457 300313.1874827665 227132.85431421828 253494.1817295804 288106.9833842151 214275.75259478914 269525.9755164095 1.0184330241949102 1.0924923047503075 1.127094769933714 1.1663678604151646 1.1142272536343445 0.8427122984307306 0.9405185576042816 1.0689395811747069 0.7950096542058278 1.0 18.040064793584683 2.7629271063886542 24.542372664806436 0.9458148375315785 1.1078778348120895 0.5396461040037943 0.07972697513929183 528.4692436741578 532282.8036178721 0.024914999871008325 0.02641380747409231 579.3314511069902 -2.7629271063886542 0.162062997280511 GISS(ph)LPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GISSLPR 7 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 GIS(0.259)S(0.741)LPR 79.059 0.043322 0.0 214890.0 165940.0 160710.0 180370.0 139600.0 169410.0 151390.0 150650.0 204290.0 182300.0 True False 213733.05611652348 171463.21258715185 183336.57108363853 203204.82350624722 157377.2325259738 157699.0854482447 144066.68733403823 161892.26798519972 153945.46684575177 170665.4579251176 1.252350995421127 1.0046743768289907 1.0742453295035284 1.190661695557673 0.9221387528519437 0.9240246231749947 0.8441467247417457 0.9485942261159416 0.9020306084040626 1.0 17.38081156606038 3.2242529565621614 24.942910654870097 0.917478816745692 1.1174797660403608 0.6639328913046356 0.07183233614931657 133.11924673774408 232069.79088067464 0.019920857251957632 0.023914176445514624 1675.918737389366 -3.2242529565621614 0.20000094929466883 GISTKPVYIPEVELNHK ddPTM_BT-474_Trastuzumab_2h_R1 1 GISTKPVYIPEVELNHK 17 1 Q14258;A0A3B3IUA7 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 184.01 3.9622000000000005e-10 1059700000.0 1545800.0 1523600.0 1383600.0 1254700.0 1389700.0 1568100.0 1531400.0 1489300.0 2186500.0 1692000.0 False True 1537477.5845545253 1574312.1049643524 1578398.8535332107 1413544.8913527122 1566670.0576027646 1459700.9379103521 1457320.3314838905 1600439.128512164 1647666.3725989352 1584015.1114059202 0.970620528480887 0.993874423058404 0.9964544164810872 0.8923809382715394 0.9890499442345845 0.9215195785694046 0.920016684809541 1.0103685987513507 1.0401834936640977 1.0 20.59515466802856 1.601971517852479 6.339223652744342 1.0214853952731089 0.9556856164067118 0.408693376680098 0.034253943673250166 0.12776644452297084 10.911370185639383 0.01875481505935414 0.008930601666583339 39.99185212173077 -1.601971517852479 -0.0657997788663971 GITINAAHVEYSTAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GITINAAHVEYSTAAR 16 0 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 145.69 1.0335e-05 0.0 100160.0 129100.0 121570.0 113010.0 130370.0 193120.0 113040.0 91533.0 132710.0 138090.0 False True 99620.74968882209 133397.0154574019 138685.99929461718 127317.05441282353 146971.84673647 179770.06895558102 107571.8233452652 98363.65725515621 100005.39872289251 129276.97797520309 0.7705993073873569 1.0318698467950658 1.072781878620483 0.9848393457746554 1.136875637398184 1.3905806878473221 0.8321034806823748 0.7608752834091123 0.7735746943440678 1.0 16.98010585307893 2.043418848976333 24.999981174707468 0.8128065904962833 1.067153969818872 0.3221376420499942 0.15644178970671985 142.952765755675 82309.65304510303 0.059451408277195736 0.04390774910675969 110.51439460541165 -2.043418848976333 0.25434737932258855 GITPLPKPPPGVGLLPTPPEHFPFS(ph)DPEDDFQTDFSDDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFR 40 1 P61129 P61129 ZC3H6 Zinc finger CCCH domain-containing protein 6 1 GITPLPKPPPGVGLLPTPPEHFPFS(1)DPEDDFQTDFSDDFR 124.55 8.214899999999999e-09 302910000.0 51096.0 52649.0 50109.0 47521.0 49782.0 50732.0 50956.0 49385.0 62218.0 60873.0 True False 50820.904813299305 54401.390138007446 57163.91164476412 53537.15372756212 56121.4426189687 47225.01625028247 48491.06360917667 53070.35947194874 46885.20757848635 56988.03302400268 0.8917820482046492 0.9546107709156101 1.0030862377841214 0.9394455447341534 0.9847934669956238 0.8286830364963088 0.8508990578557574 0.9312544521337688 0.8227202289775268 1.0 15.798371377607273 2.75199775217503 24.823494016891992 0.8836197224334863 0.9565720425054056 0.2702807132205861 0.055736699084823704 892.5234992118744 1648828.1283204623 0.016306611805460905 0.017206686011343765 564.9340508144047 -2.75199775217503 0.07295232007191932 GIVDQSQQAYQEAFEISK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIVDQSQQAYQEAFEISK 18 0 B7Z2E6;H0YB80;P63104-2;P63104;B0AZS6 B7Z2E6;P63104 YWHAZ 14-3-3 protein zeta/delta 0 ; 318.74 4.323699999999998e-61 125770000.0 222066.0 212387.0 192665.0 194651.0 192632.0 238570.0 236039.0 218750.0 257953.0 224732.0 False True 220870.4213298519 219456.17290434745 219790.55732579945 219293.79664198335 217162.54338068326 222078.217433373 224620.89181345585 235074.23578999293 194383.93954311102 210389.41135725466 1.0498171932940095 1.0430951419494057 1.0446845015055488 1.0423233528117462 1.0321933122952056 1.055557957982353 1.0676435204813384 1.117329214780785 0.9239245373096969 1.0 17.68270257181043 1.2306879708028768 24.999966514409614 0.9619622592425835 1.057913937458984 0.6446244527082445 0.028087252974945257 124.04401351066033 393892.2809483416 0.027051131397754703 0.0072640920108171785 17.009359913666856 -1.2306879708028768 0.0959516782164006 GIVDQSQQAYQEAFEISKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIVDQSQQAYQEAFEISKK 19 1 B7Z2E6;H0YB80;P63104-2;P63104;B0AZS6 B7Z2E6;P63104 YWHAZ 14-3-3 protein zeta/delta 0 ; 295.65 1.7768e-49 2558900000.0 1792860.0 1963300.0 1877330.0 1949680.0 2011530.0 2297700.0 2553400.0 2107070.0 3510000.0 2646300.0 False True 1783207.4409654723 2028647.253660089 2141641.7459551203 2196509.288094804 2267686.422227598 2138865.4072040115 2429882.2870647553 2264310.2628846625 2645007.5315903323 2477410.8683885867 0.719786719158678 0.8188578162570214 0.8644677284992033 0.8866148591345718 0.9153453111726265 0.8633470670915481 0.9808152204665406 0.91398253385296 1.0676499265181465 1.0 21.240401722781577 6.951857048955049 0.23004343093042978 1.0171441369558936 2.082392045528892e-14 0.7860384175365382 0.04309988573795333 13.833411634679086 0.2753142257792574 0.0614170069754787 4.802597747189605 8950700.985170977 -6.951857048955049 -1.0171441369558727 GIVEFASKPAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIVEFASKPAAR 12 1 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 187.51 9.4729e-06 8839200000.0 3762600.0 4822000.0 4122600.0 4199400.0 3941800.0 4240600.0 4486500.0 4021200.0 5767400.0 4313100.0 False True 3742342.579664156 4982497.355039448 4703026.245718432 4731043.609425817 4443764.865120947 3947457.3032986587 4269470.854905629 4321282.363239857 4346101.549200588 4037834.265369309 0.9268192634255812 1.2339529132664233 1.1647397928275995 1.171678503499228 1.100531763582553 0.977617466163539 1.0573665421394243 1.0701980515400435 1.0763447094585206 1.0 21.945150265175133 2.9909141650206053 23.252566341605124 1.0442137136930436 1.1351546699483337 0.21069902055131762 0.0797775035140158 255.36243169119768 653532.550653934 0.022786918691053263 0.02588623071023102 979.2964158414483 -2.9909141650206053 0.09094095625529008 GIVEFSGKPAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GIVEFSGKPAAR 12 1 Q15233;Q15233-2;H7C367;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 190.78 5.6551e-06 3968400000.0 1845200.0 2201000.0 2042900.0 2002400.0 1970700.0 2012900.0 2198200.0 2030400.0 2745800.0 2211900.0 False True 1835265.6482209922 2274258.954467402 2330522.56279488 2255903.6346893036 2221656.963745966 1873752.9608569278 2091864.668060527 2181918.7581622894 2069134.3818349661 2070734.6482971362 0.8862872168243375 1.098286038888485 1.125456883001103 1.089421880560332 1.0728834646066026 0.9048735251509913 1.0102041175487004 1.0536930745600772 0.9992271986835755 1.0 20.981711262374215 GIWHNNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GIWHNNEK 8 0 P12532;P12532-2;F8WCN3 P12532 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial 0 ; 155.75 0.00040391 1155250000.0 1329720.0 1546020.0 1478850.0 1260040.0 1447460.0 1930010.0 1669070.0 1449000.0 1991370.0 1586510.0 False True 1322560.9352657807 1597478.3411111736 1687059.2256053698 1419560.9348051893 1631785.4512324228 1796592.951454854 1588330.7076334187 1557131.7378729105 1500623.5464908937 1485257.5735204534 0.8904589741501613 1.0755564351876876 1.1358698017654898 0.9557675113821869 1.0986548598198087 1.2096170950311693 1.0693974809154851 1.048391717122907 1.0103456620887776 1.0 20.5022817143686 4.739337255171369 24.148688104778735 1.0716407822563982 0.8904588941684342 0.37350324180626737 0.06838829065791095 42.50202718958414 1321149.7920681115 0.016362547143825703 0.09817876219724356 54870.28995447128 -4.739337255171369 -0.1811818880879641 GIYAYGFEKPSAIQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GIYAYGFEKPSAIQQR 16 1 P60842;J3KT12;P60842-2;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;J3KS25;J3QKZ9;J3QQP0;J3KSN7;J3KT04;J3KS93;Q14240;Q14240-2;E7EQG2;E9PBH4;F8WE11;E7EMV8;P38919;I3L3H2 P60842;Q14240;P38919 EIF4A1;EIF4A2;EIF4A3 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ; 242.19 5.612999999999999e-20 18449400000.0 1809060.0 2157900.0 1940260.0 1768720.0 1752750.0 1852830.0 2040100.0 1865060.0 2341600.0 1996970.0 False True 1799320.2219654627 2229724.3970219046 2213431.7429577517 1992639.770649054 1975952.3231368242 1724748.2231926774 1941412.5690611796 2004240.2477827852 1764544.0558324566 1869521.664907966 0.9624495162264091 1.1926710660139213 1.1839561875666822 1.0658554046481985 1.0569293526930577 0.9225612388276786 1.0384541701241814 1.0720604555719075 0.9438478777507628 1.0 20.834237759254773 3.2798832927886328 2.623591395970148 1.0093314785409229 1.1199155429100216 0.3081233883723461 0.07276055090599566 0.3339628099133535 4.696425008396295 0.021868382475698493 0.029963717601932595 1904.9487355672657 -3.2798832927886328 0.11058406436909873 GIYETPAGTILYHAHLDIEAFTMDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GIYETPAGTILYHAHLDIEAFTMDR 25 0 P00966 P00966 ASS1 Argininosuccinate synthase 0 ;; 234.64 1.2527e-38 514272000.0 294341.0 346298.0 286322.0 355489.0 317393.0 348750.0 302529.0 186931.0 488095.0 287366.0 False True 292756.30076035956 357824.31958843797 326633.64884456183 400493.8709508918 357811.1172143015 324641.73336919484 287894.51649698976 200880.7404363846 367810.52738791535 269026.0558535896 1.0882079798236515 1.3300730981357973 1.2141338793678915 1.4886806026285058 1.3300240234315104 1.2067297063072306 1.070136182844939 0.7466962253860967 1.3671929517045984 1.0 18.037386382647433 2.27795414236585 3.12799537964026 0.9904268892356589 1.2958551400132132 0.2958051382892545 0.17150703542894616 0.2512534051150017 5.068799883136263 0.06664396388932835 0.05074500444765255 189.65056565107284 -2.27795414236585 0.3054282507775543 GIYPHEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GIYPHEPK 8 0 B5MCF9;O00541-2;O00541 B5MCF9 PES1 Pescadillo homolog 0 81.191 0.023501 110460000.0 192450.0 214830.0 192710.0 176180.0 153110.0 189000.0 234370.0 207540.0 325920.0 213460.0 False True 191413.87058320528 221980.4866825228 219841.89293465242 198484.36993585745 172607.65094593022 175934.87485814455 223032.62771965485 223027.68866676593 245601.38310425112 199836.8000476994 0.9578509590701831 1.1108088531718778 1.1001071518467969 0.9932323270212537 0.8637430688678471 0.880392774584813 1.1160738545974456 1.116049139165214 1.2290097872145076 1.0 17.60846275505278 2.1148708757779433 10.19381333209268 1.1249068263485011 0.9903594470525806 0.3305831397776964 0.09070047525972623 0.3955797142494603 33.59103714280319 0.03667727443250007 0.027084127548158803 130.2779379139318 -2.1148708757779433 -0.13454737929592053 GKAEEQAVR ddPTM_BT-474_Trastuzumab_2h_R1 5 GKAEEQAVR 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;; 168.74 5.380600000000001e-05 1268070000.0 2062670.0 2231330.0 2228040.0 1837950.0 1612880.0 1920560.0 2374680.0 1745480.0 2971740.0 2124080.0 False True 2051564.8139041793 2305598.470182533 2541728.66552915 2070634.2815507408 1818270.707711266 1787796.2077119483 2259807.656241456 1875736.5809678477 2239394.496275856 1988519.3958836233 1.0317047035855242 1.1594548561886224 1.2782015960169708 1.0412944856545534 0.9143841953340841 0.899058973934483 1.1364272638825745 0.9432830199447669 1.126161756788273 1.0 20.923263203485728 3.4952292139498153 24.17817268290767 0.998980485145005 1.157252901115264 0.3541847247430494 0.09257784067603098 502.6325161004443 671125.1114390136 0.02441429314328309 0.03697975391341124 3127.7296992188167 -3.4952292139498153 0.15827241597025887 GKAS(ph)PFEEDQNR ddPTM_BT-474_Trastuzumab_2h_R1 6 GKASPFEEDQNR 12 1 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01;A0A0C4DG68 Q8TB72-3 PUM2 Pumilio homolog 2 1 GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR 181.72 1.0781e-05 8846550000.0 7105140.0 6740250.0 6375530.0 6571820.0 6181500.0 7436470.0 7422380.0 7080910.0 9399370.0 7798420.0 True False 7066886.715695269 6964595.146682835 7273149.206899821 7403811.738176114 6968677.384378988 6922404.332467438 7063331.123154891 7609323.460332428 7083021.208605192 7300718.1590367425 0.9679714463361335 0.9539602810255238 0.9962238027086695 1.0141210189043885 0.9545194366602472 0.9481812859600623 0.9674844267768347 1.0422705403185162 0.9701814334303416 1.0 22.799606955716868 1.777127999372518 24.999999995275658 1.0084488544325925 0.9720919455678368 0.25466575870304653 0.025051852850636522 63.85819350729021 41410.443115230686 0.011909888770799088 0.006612626955866228 59.85879905720525 -1.777127999372518 -0.03635690886475562 GKDCAVIVTQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKDCAVIVTQK 11 1 G3V5Z7;P60900;G3V3I1;G3V295;P60900-2;G3V3U4 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 121.28 0.00037839 545630000.0 800830.0 791310.0 753600.0 742540.0 710230.0 856750.0 939110.0 853360.0 1102200.0 928780.0 False True 796518.4202605773 817648.2749930037 859700.3295913767 836545.487865658 800673.5806369801 797524.8890725683 893681.6615514162 917042.0564742772 830577.5787233231 869504.4652314363 0.9160601838296112 0.9403612145630212 0.9887244562482493 0.9620945277641495 0.9208389521310446 0.9172177038335172 1.0278057184140448 1.0546720495911286 0.9552309527269052 1.0 19.72983391076765 2.230674749948949 24.99372256086305 1.0188363818284232 0.9430868291999123 0.5186026526446644 0.03179818052028054 134.24776253258872 425485.8773960004 0.01232341803025141 0.009266185285564802 170.08842120212555 -2.230674749948949 -0.07574955262851091 GKDETDSPTVHLGLDS(ph)DS(ph)ESELVIDLGEDHSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GKDETDSPTVHLGLDSDSESELVIDLGEDHSGR 33 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 2 GKDET(0.002)DS(0.007)PT(0.032)VHLGLDS(0.958)DS(0.837)ES(0.163)ELVIDLGEDHSGR;GKDETDSPTVHLGLDS(1)DS(0.984)ES(0.016)ELVIDLGEDHSGR;GKDETDSPTVHLGLDS(0.999)DS(0.856)ES(0.145)ELVIDLGEDHSGR 213.26 5.110699999999999e-28 606660000.0 232222.0 252822.0 225083.0 210444.0 229219.0 294756.0 282280.0 242979.0 336095.0 286363.0 True False 230971.74255428943 261237.02743587346 256772.72994349233 237086.18882269046 258408.68096254457 274380.2115009903 268625.0379856817 261111.326802362 253268.89069226573 268087.068172301 0.861554957234426 0.9744484477258524 0.9577960313194336 0.8843626454608169 0.9638983436398504 1.0234742517481101 1.0020066981113573 0.9739795678415355 0.9447262503892522 1.0 18.03234210355341 3.0082205565014313 24.231151086747914 0.9878945952719252 0.9259369633543164 0.449315706791551 0.0359312804689196 132.39121548036167 390234.78785397846 0.010377785323391082 0.0123823649688785 1019.1088111805633 -3.0082205565014313 -0.061957631917608835 GKDETDSPTVHLGLDS(ph)DSESELVIDLGEDHSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKDETDSPTVHLGLDSDSESELVIDLGEDHSGR 33 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 GKDETDSPTVHLGLDS(0.997)DS(0.003)ESELVIDLGEDHSGR;GKDETDSPTVHLGLDS(0.998)DS(0.002)ESELVIDLGEDHSGR 217.77 2.9224999999999995e-36 344680000.0 244030.0 262970.0 231840.0 233020.0 238050.0 289740.0 274620.0 248920.0 285110.0 307040.0 True False 242716.16959428173 271722.7974812783 264481.05681059527 262520.3081079209 268364.25646710675 269710.9557745967 261335.58144972357 267495.67439014855 214848.46077826736 287444.4443298308 0.844393323239098 0.9453054419430261 0.9201119104153358 0.913290596796818 0.9336213023451922 0.9383063791802299 0.9091690119773252 0.9305995633827876 0.7474434278219602 1.0 18.132923621329265 -1.1502515705354937 4.373552198401995 1.0000182111292208 0.9052114146757372 0.21206179734749075 0.05748654275334894 9.550402782015858e-06 1.8555240613623022e-06 0.052075300806023406 0.012271908795004373 0.07075358166442365 1.1502515705354937 -0.09480679645348367 GKDETDSPTVHLGLDSDS(ph)ESELVIDLGEDHSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKDETDSPTVHLGLDSDSESELVIDLGEDHSGR 33 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 GKDETDSPTVHLGLDS(0.287)DS(0.698)ES(0.015)ELVIDLGEDHSGR 165.52 1.9119999999999998e-14 117410000.0 27401.0 44873.0 36998.0 35410.0 38513.0 41064.0 42847.0 37215.0 45669.0 49776.0 True False 27253.47606053731 46366.57067869867 42206.99680761908 39892.90236933089 43417.40226556472 38225.34233425843 40774.326918564926 39992.17227394094 34414.4868832475 46599.25306462239 0.5848479163977809 0.9950067357173935 0.9057440630880442 0.8560845881801723 0.931718845479236 0.8202994644838774 0.8749995812598189 0.8582148777895869 0.7385201397010068 1.0 15.508019209780905 4.7529984678440345 24.811996645452297 0.879813186932737 0.5848476903271712 0.5945514295654961 0.07459179154900814 1606.2229487537022 2760303.105095757 0.016953082526132143 0.3703713945516444 56623.72913951553 -4.7529984678440345 -0.2949654966055658 GKDNFLFITYEELQQDLQGSVER ddPTM_BT-474_Trastuzumab_2h_R1 2 GKDNFLFITYEELQQDLQGSVER 23 1 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 0 ; 178.58 4.6639e-17 387000000.0 244980.0 282780.0 255010.0 273290.0 266550.0 280760.0 309630.0 262180.0 341600.0 297930.0 False True 243661.0548998365 292192.16135588026 290913.19141334516 307888.4859789453 300493.56253437174 261351.72203795024 294652.0139985359 281745.202923064 257417.25720548604 278915.8523292944 0.8736005962549764 1.0475996932971439 1.0430141886302198 1.1038758944953948 1.07736279607228 0.9370271350851456 1.0564190293876272 1.0101441010618115 0.922920856078031 1.0 18.08947040746539 1.4089220595034126 7.730157906231815 0.9621480612052485 1.024641897755701 0.10387101856308534 0.06663092097568457 0.49958971201209634 46.132541029896124 0.043297740844613845 0.01621181583648077 25.64023843645697 -1.4089220595034126 0.062493836550452486 GKDQTSSHNSSDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKDQTSSHNSSDDK 14 1 K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26 K7EMM8 GLYR1 Putative oxidoreductase GLYR1 0 79.81 0.010844 31020000.0 12510.0 20423.0 22205.0 21296.0 22048.0 16646.0 24128.0 23688.0 28527.0 27868.0 False True 12442.647549991665 21102.76720903579 25331.270990680066 23992.071416471914 24855.68211126556 15495.30120046917 22960.83646208915 25455.718845226726 21496.90309221577 26089.440381004835 0.47692274607204266 0.8088623941661954 0.9709396070113955 0.9196085108034755 0.9527104356505267 0.5939299952079834 0.8800816010912387 0.9757096539242173 0.8239694979378402 1.0 14.671178378200484 4.712226579712603 3.3973240059491188 0.8861866112949032 0.435564500763854 0.5513862070658262 0.11115453605863625 0.2114555347232247 4.178680445675297 0.027435487933887753 0.23766837679851732 51549.75193227717 -4.712226579712603 -0.45062211053104917 GKDSLYAQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKDSLYAQGR 10 1 Q969Q0 Q969Q0 RPL36AL 60S ribosomal protein L36a-like 0 ; 108.9 0.0019057 507260000.0 344460.0 415030.0 424940.0 376660.0 325960.0 364060.0 409610.0 339140.0 552450.0 415190.0 False True 342605.4656331037 428844.02265906654 484767.858355307 424345.1173801798 367469.0738837135 338893.38910505845 389795.59943784546 364448.3489180262 416306.0999507341 388692.2187379573 0.8814312433253939 1.1032997368753044 1.2471766477067567 1.091725269823985 0.9453985857418162 0.8718810739391943 1.0028387002535597 0.937627077026012 1.0710430512409952 1.0 18.568268700970297 3.244435765731281 24.23252494265637 0.9639350987454482 1.0943839817895684 0.23017592514389917 0.0962169266794548 125.86051947390993 519115.9539529186 0.027345231208176866 0.03603292903348933 1755.6412071113016 -3.244435765731281 0.13044888304412017 GKDYYQTLGLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKDYYQTLGLAR 12 1 P25685 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 59.607 0.089223 536700000.0 380780.0 510060.0 495390.0 487100.0 429540.0 486800.0 501640.0 399740.0 500930.0 494940.0 False True 378729.9227886356 527037.038762219 565136.6059929291 548766.8100565122 484239.37291695416 453148.66180394014 477373.7567491046 429570.6286385903 377482.51361810387 463352.5054605473 0.8173688893992244 1.137442945815892 1.2196688252094674 1.184339792251836 1.045077704793344 0.9779782270812044 1.030260441291066 0.9270924913023193 0.8146767507880565 1.0 18.821750647150246 2.264367428097741 1.2159785659428846 0.9109522005894112 1.096626578935047 0.26154444626337925 0.11374561861402437 0.6031333095198083 1.7322317838568437 0.07439908608580961 0.04341609853388078 183.80927755339212 -2.264367428097741 0.18567437834563572 GKEAVVQEPER ddPTM_BT-474_Trastuzumab_2h_R1 1 GKEAVVQEPER 11 1 B7Z6D5;Q96GQ7 B7Z6D5 DDX27 Probable ATP-dependent RNA helicase DDX27 0 98.531 0.0049718 130780000.0 156650.0 200810.0 176510.0 203600.0 202550.0 187890.0 196240.0 204290.0 292070.0 218530.0 False True 155806.61380545102 207493.83945779168 201361.07374757656 229375.73912442153 228343.54189209174 174901.6065454857 186747.12149040028 219535.15716360058 220093.2620374892 204583.22830705397 0.761580580650554 1.0142270271850888 0.98425015292729 1.1211854511365764 1.116140085292703 0.8549166419594286 0.9128173557321917 1.0730848221541682 1.0758128310848463 1.0 17.642328352511143 4.739063934221652 6.833896080469627 1.0174762939709274 0.7573579334373581 0.4715541376218687 0.0811016538705785 0.10595156211366175 34.93282975701306 0.02052858967085996 0.1269283310351291 54835.768489954055 -4.739063934221652 -0.2601183605335693 GKEDALVTK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKEDALVTK 9 1 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299;M0R2U2;M0R1H0;M0R2B0 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ;; 112.15 0.0018329 1653020000.0 2991240.0 3003430.0 2580180.0 2559430.0 2748350.0 3537020.0 3544510.0 3401840.0 4726240.0 3561760.0 False True 2975135.4961980064 3103397.351938227 2943446.9166734065 2883453.575575728 3098336.0817532996 3292514.1326494883 3373048.5099568805 3655702.574993503 3561521.48037136 3334445.4274238492 0.8922429714186563 0.9307086948895946 0.8827395681648558 0.8647475684745118 0.9291908202399447 0.987424807007036 1.0115770623251301 1.0963450008590643 1.0681000957700324 1.0 21.66901540700545 2.4941963808412284 1.5593646032411592 1.061959346512602 0.8949074534431645 0.8422195996248307 0.029812479110341128 0.13452231387615737 0.6627137123505705 0.014041277213393303 0.010931590211615577 312.0300213714224 -2.4941963808412284 -0.16705189306943757 GKEDDSFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKEDDSFLR 9 1 Q9H9Y6-4;Q9H9Y6-5;Q9H9Y6-2;Q9H9Y6;Q9H9Y6-3 Q9H9Y6-4 POLR1B DNA-directed RNA polymerase I subunit RPA2 0 68.893 0.051785000000000005 234490000.0 297760.0 361600.0 327870.0 317690.0 328600.0 337670.0 343030.0 322670.0 407650.0 360480.0 False True 296156.8932442458 373635.6374081838 374031.24610287196 357909.52142651053 370445.2622352083 314327.6676896807 326436.32839814475 346749.2738850599 307190.1197301419 337473.8577775453 0.8775698811001394 1.1071543137260589 1.1083265784380383 1.0605548049959945 1.0977006179820807 0.9314133834238444 0.9672936758654763 1.0274848433256385 0.9102634549329575 1.0 18.364416223369314 2.7393691215238887 24.999927866110305 0.9738343718693053 1.0572196825307518 0.2568449170628049 0.06962460928820442 105.27688471814675 3255312.996616374 0.021528359367333615 0.021614682212670315 548.7431620906495 -2.7393691215238887 0.0833853106614465 GKEDEGEEAASPMLQIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKEDEGEEAASPMLQIQR 18 1 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 198.77 1.5477e-15 976940000.0 1011690.0 908350.0 790780.0 788850.0 821110.0 1070940.0 964240.0 931690.0 1371450.0 1133280.0 False True 1006243.1734493263 938583.8806408291 902114.9504170222 888718.3291173879 925673.4913997302 996908.4385215931 917596.0274454925 1001217.4388259586 1033474.5239884785 1060953.1001501777 0.948433227922038 0.8846610472300545 0.8502873032647041 0.8376603348362807 0.8724923762122013 0.9396347853458187 0.8648789727987098 0.9436962281218996 0.9741001028624077 1.0 20.016929452083684 1.4099648378718619 1.4110067101102906 1.0006107558311148 0.8816963800436013 0.5950301101414524 0.03400749145802423 0.2676414118224401 1.0066347854394238 0.03167249452579949 0.010241170019006353 25.70187682203541 -1.4099648378718619 -0.11891437578751352 GKEDKENR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKEDKENR 8 2 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 88.37 0.008247200000000001 86205000.0 268960.0 217809.0 191218.0 180901.0 198387.0 193731.0 255610.0 249680.0 386200.0 308030.0 False True 267511.94924426515 225058.640896679 218139.83230334902 203803.04805180238 223650.40851812612 180338.83196372044 243245.16777497585 268312.38944935036 291026.1848148675 288371.26168224897 0.9276650789808303 0.7804475369139489 0.7564548250432573 0.7067384137479318 0.7755641363616962 0.6253703330619419 0.8435139006431344 0.9304408070489316 1.009206614823997 1.0 18.13756787100458 1.7278713557338539 2.432462410446693 0.995600909666135 0.7602607705419018 0.6424612226354216 0.07284434800202716 0.16334887567639392 2.031998635261451 0.0472390749674787 0.02056298432303088 53.44060372020934 -1.7278713557338539 -0.23534013912423324 GKEELAEAEIIKDSPDS(ph)PEPPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKEELAEAEIIKDSPDSPEPPNK 23 2 Q9NVM9-2;Q9NVM9;H0YH12 Q9NVM9-2 ASUN Protein asunder homolog 1 GKEELAEAEIIKDSPDS(1)PEPPNK;GKEELAEAEIIKDS(0.002)PDS(0.998)PEPPNK 155.45 1.4943e-08 731800000.0 670740.0 370020.0 350790.0 299117.0 318627.0 566640.0 500690.0 523840.0 744840.0 518800.0 True False 667128.8103662201 382335.89201818645 400178.18287866056 336985.1815308432 359202.25979981 527469.5105270843 476469.7118784571 562931.6008056214 561284.162344655 485689.7398329732 1.3735699061619935 0.7872019123765519 0.8239378970951297 0.6938280838436716 0.7395714390082406 1.0860215221109655 0.9810166301687022 1.1590353977813312 1.155643441299951 1.0 18.889675484272946 2.7149723938718995 23.27661866106439 1.084125871002766 0.864405322803575 0.21061320248069615 0.18438143385138822 473.27361746202695 467020.12304004934 0.0599840128945413 0.05659535160997863 518.7670622144379 -2.7149723938718995 -0.21972054819919096 GKEHDDIFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKEHDDIFDK 10 1 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;C9JMB8;A0A2R8YE78;A0A2R8YFD1 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 110.66 0.0011154 288910000.0 503560.0 458160.0 527010.0 364360.0 475730.0 840670.0 566530.0 584280.0 1008200.0 618670.0 False True 500848.8889107755 473409.5786364312 601208.427146962 410487.9386413276 536311.3956273752 782556.461624318 539124.7795452331 627881.9405137231 759742.6191878554 579185.9509299655 0.8647462669054581 0.8173706179790873 1.0380231533269002 0.708732554686851 0.9259744556411477 1.3511316363385752 0.9308319352007616 1.084076607012945 1.3117421407891205 1.0 19.14366708243547 2.9805294575320307 24.51352670825669 1.1208446490783777 0.8610449001482282 0.472954099649455 0.14070380027734558 531.6194397325064 669312.9315388617 0.0410359203574628 0.04414800801301587 956.1575475278423 -2.9805294575320307 -0.25979974893014945 GKEKCSEKSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKEKCSEKSR 10 3 Q5VUJ6-2;Q5VUJ6 Q5VUJ6-2 LRCH2 Leucine-rich repeat and calponin homology domain-containing protein 2 0 ; 77.37899999999998 0.04057 2780500000.0 2030280.0 4324400.0 3941600.0 4160100.0 3972800.0 3643600.0 3532300.0 3137700.0 2294800.0 3950300.0 False True 2019349.198065316 4468335.039844993 4496543.018998635 4686768.233455342 4478712.531369544 3391726.5081118247 3361429.1543036094 3371851.1069177575 1729277.288744583 3698188.4719780157 0.5460373946234399 1.2082496805402283 1.2158771931365657 1.2673145971245143 1.2110557818525827 0.9171318697821054 0.9089393847214371 0.9117575084306849 0.4676011787521636 1.0 21.81838732047495 2.1552842584683893 1.4748641443820252 0.7795995443758045 1.1058113594579972 0.22103525321083672 0.2345888030362168 0.5847524386951816 2.4456189813447535 0.1427046597876654 0.07818066529242323 142.9829517632537 -2.1552842584683893 0.32621181508219277 GKELNEFR ddPTM_BT-474_Trastuzumab_2h_R1 4 GKELNEFR 8 1 Q9UHV9 Q9UHV9 PFDN2 Prefoldin subunit 2 0 ;;; 107.57 0.0036269 2184510000.0 2236780.0 2851230.0 2702890.0 2653820.0 2201610.0 2502780.0 2832010.0 2320160.0 3893080.0 2769470.0 False True 2224737.42500962 2946131.466945071 3083433.4180589635 2989793.3398977052 2481971.9835351654 2329768.7095104074 2695014.8569711996 2493302.1207337575 2933682.598599338 2592720.0535374456 0.8580708210183514 1.1363091294509173 1.1892658499138773 1.1531493096674676 0.9572849873046733 0.8985808962798457 1.0394546273108758 0.9616549682376836 1.1315076591461122 1.0 21.30603501031037 3.230738248737351 24.987794909435582 0.9921522544431534 1.0954257390350017 0.1425446774665745 0.10137418145849268 293.55868063004294 937744.201933393 0.02931766768984695 0.035645878622562806 1701.1329188026511 -3.230738248737351 0.10327348459184837 GKENQLQLSCFINQEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKENQLQLSCFINQEVK 17 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 188.41 3.7613e-10 206290000.0 263120.0 226100.0 234030.0 223160.0 232840.0 310550.0 272740.0 254870.0 373400.0 348080.0 False True 261703.39115538023 233625.6018196637 266979.3897747742 251412.03311888958 262490.7938491959 289082.40945606783 259546.52423202083 273889.6936036363 281380.57330365485 325865.2363937192 0.8031031295378286 0.7169393225406557 0.8192938673955465 0.7715214912189244 0.8055194741056926 0.8871225806572096 0.7964842371784319 0.8404998846600358 0.8634875460102261 1.0 18.313915926674415 -4.999999998943602 0.11745841110397767 1.6452405986260776 0.7091325071783835 0.7603898195160846 0.035351315172756574 70.26919804628429 0.5389662490946125 10.694303659125714 0.3467606211766087 1.0000000024324454e-05 4.999999998943602 -0.9361080914476941 GKEQERPPEAVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKEQERPPEAVSK 13 2 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 0 ; 95.067 0.0027370000000000003 185852000.0 243826.0 253910.0 238981.0 219639.0 210742.0 250289.0 242463.0 212872.0 345550.0 249764.0 False True 242513.26790761523 262361.2408581639 272627.44753991027 247445.27487990618 237578.74453430343 232987.1105469319 230734.138391393 228757.58958211332 260393.83263277434 233823.84768628172 1.0371622497333632 1.122046546809761 1.165952276628733 1.0582550810296312 1.0160586564851144 0.9964215064133558 0.9867861669138465 0.9783330137011271 1.113632485349147 1.0 17.83506255222852 3.4317401925144537 3.673500395002384 1.0091990868955212 1.1105089247170923 0.4434177032780068 0.04629578451599036 0.18921621599823174 5.339111979846962 0.01311873193205167 0.01886165352931037 2702.341261971238 -3.4317401925144537 0.1013098378215711 GKFDGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKFDGAK 7 1 O15347;E7ES08;E7EQU1 O15347 HMGB3 High mobility group protein B3 0 75.109 0.040458 1994100000.0 2431900.0 2133900.0 2069400.0 1583000.0 1503000.0 1705700.0 2537900.0 2037300.0 3726700.0 2232700.0 False True 2418806.9206094933 2204925.571530209 2360753.5324527496 1783407.6376913525 1694398.1410210505 1587788.9737859105 2415132.081280507 2189333.671199779 2808304.7202215595 2090207.1744893612 1.157209175305988 1.054883744750744 1.1294351877007038 0.8532205129986887 0.8106364582903094 0.7596323432263637 1.1554510532529032 1.0474242447926887 1.3435532872035185 1.0 20.995214513924797 -0.8775524091961944 8.032772007395781 1.0000000078154079 1.0248300951710614 0.0007398155022648734 0.1715182444903064 0.0 0.0 0.17186873933980912 0.04050985035372074 0.1325707126233612 0.8775524091961944 0.024830087355653507 GKFEDMAK ddPTM_BT-474_Trastuzumab_2h_R1 4 GKFEDMAK 8 1 P09429;Q5T7C4;B2RPK0;P23497 P09429;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 0 ;;; 111.65 0.0029114 13487660000.0 13270290.0 12341970.0 13990170.0 8905060.0 5917190.0 10482300.0 13748330.0 8783280.0 23676490.0 11396510.0 False True 13198844.233107822 12752765.010571592 15959864.331262441 10032439.682943625 6670709.072567102 9757683.27368004 13083270.754179133 9438732.954192134 17841736.288211726 10669174.974756893 1.2371007378111325 1.19529064250464 1.4958855177671413 0.9403201003526727 0.6252319498321003 0.9145677427511099 1.2262682714580981 0.8846731801216152 1.6722695363441882 1.0 23.346945284062176 3.7221540213537287 24.737277262904406 1.0146491236577342 1.2980121505594868 0.1744322921634064 0.267387034998825 1136.4841595904409 1713550.66849786 0.07120225519283496 0.11066302102365784 5274.168752154782 -3.7221540213537287 0.28336302690175263 GKFGHEFLEFEFRPDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKFGHEFLEFEFRPDGK 17 2 P61326;Q96A72;F5H6N1;P61326-2 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 0 ; 161.86 1.7501e-09 2652030000.0 2061490.0 2375240.0 2050080.0 1941460.0 2028150.0 2320720.0 2441260.0 2291800.0 3346840.0 2551360.0 False True 2050391.1668930685 2454298.4275370995 2338713.444385201 2187248.636937624 2286422.880713139 2160294.088787263 2323166.927281157 2462825.753524595 2522056.1273583407 2388530.020470806 0.8584322362793303 1.0275350975297057 0.9791434163863741 0.9157300172875753 0.9572510544633891 0.9044450227849532 0.9726345942360126 1.0311052121669144 1.0559030473735538 1.0 21.1876915788996 1.8331266956985663 3.5073070431115276 1.032821061235854 0.9454192586394146 0.435869223152055 0.04460348152370484 0.22120850799165934 4.67422397261103 0.02248888486318147 0.011867078726546635 68.0967986894454 -1.8331266956985663 -0.08740180259643937 GKFNTSDVSAIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKFNTSDVSAIEK 13 1 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 160.48 3.9933e-05 1995160000.0 3468600.0 3666900.0 3546300.0 3088000.0 3187100.0 4542700.0 3872400.0 3579300.0 5448300.0 3828100.0 False True 3449925.442997686 3788950.549812144 4045588.2150078244 3478940.483380229 3592958.2935783095 4228673.841365567 3685077.2179954457 3846405.5413171235 4105639.468479656 3583787.3805987053 0.9626479131195957 1.057247584029152 1.1288583237133814 0.9707441078156371 1.0025590002993068 1.179945513580978 1.028263350093001 1.073279503728412 1.1456146898407156 1.0 21.773053616860604 GKFQDNFEFVQWFK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKFQDNFEFVQWFK 14 1 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 ; 130.98 5.372e-05 556210000.0 843320.0 1029070.0 1040630.0 1063810.0 979360.0 1082590.0 1193780.0 1014770.0 1489550.0 1261140.0 False True 838779.6588216611 1063321.972864049 1187141.6586818928 1198488.236925102 1104075.6908784942 1007753.1014427437 1136032.3007175392 1090497.2902976498 1122470.3614474004 1180652.9654837232 0.7104370914598146 0.900621947303878 1.0054958513533323 1.0151062775962043 0.935139895596794 0.8535557279779151 0.9622067905890512 0.9236391405249756 0.9507199780652862 1.0 20.171153538674172 4.7043498574805485 3.3814353103378356 0.9499707471943556 0.6878564901280056 0.7241971360138973 0.04520890163015122 0.14949693078156598 2.907579375897278 0.011535240190486339 0.096108201845015 50623.23066968031 -4.7043498574805485 -0.26211425706634994 GKGAYQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKGAYQDR 8 1 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 86.01100000000002 0.014899 404010000.0 382850.0 544840.0 536780.0 561290.0 509880.0 412050.0 589850.0 459250.0 808290.0 611410.0 False True 380788.7781386334 562974.6700372655 612353.9582246009 632349.2564496398 574810.1957044668 383565.95336136734 561316.7020541811 493521.5670242472 609097.7600310969 572389.290345564 0.6652618848070041 0.9835520676799968 1.069820782032643 1.1047538224691043 1.0042294735414095 0.6701137841516918 0.98065549359825 0.8622131394636985 1.0641319995057406 1.0 19.126637153297533 7.995640909947022 0.007899804793807058 1.7906337201351021 6.139043976312043e-06 0.03259755695580502 0.14755107241678075 159040.4329338987 97.21446764118163 9795.290778763372 12380.273220480713 99001302.8563438 -7.995640909947022 -1.7906275810911259 GKGDPNKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GKGDPNKPR 9 2 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ;; 74.173 0.023533 13501600000.0 9052560.0 8535860.0 8588990.0 7694820.0 6780830.0 7210140.0 9492990.0 8630900.0 12759770.0 10364710.0 False True 9003822.022793965 8819970.940063667 9798245.135160606 8668983.423032328 7644328.507371771 6711719.992643931 9033777.806956567 9274981.584822163 9615295.655658217 9703225.334125329 0.9279205328900662 0.9089731132023349 1.0097925996525199 0.8934125638146659 0.7878131491481898 0.6916998999332155 0.9310077315411425 0.9558658348583257 0.9909380978551666 1.0 23.210032945501155 1.7958912675572927 3.2184827073799367 0.982610845183305 0.8724376540205626 0.26967273441219364 0.08122480005756327 0.37271013747650966 7.2234206849619245 0.049783763796790406 0.02496485956233678 62.50161905679837 -1.7958912675572927 -0.11017319116274238 GKGFSVVADT(ph)PELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKGFSVVADTPELQR 15 1 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 GKGFSVVADT(1)PELQR 105.92 0.0020641 370150000.0 194510.0 219910.0 219280.0 222010.0 198060.0 260230.0 209740.0 183380.0 398220.0 246590.0 True False 193462.77977209276 227229.5714115975 250152.71798407243 250116.44323680192 223281.76700640694 242240.91261552842 199594.074915392 197064.74678477217 300084.01687461586 230852.41508367978 0.8380366291683197 0.9843066676570438 1.0836045093719147 1.0834473754417482 0.967205679548431 1.0493323733594926 0.8645960010556649 0.8536395285851344 1.2998955058184722 1.0 17.81661129978932 4.722012593852065 4.424561151170704 1.0060125046049646 0.8285601942309799 0.16403342712081692 0.12045893459083278 0.3703613719072217 17.62530176948774 0.02951961174040371 0.1991222640336619 52724.51504753646 -4.722012593852065 -0.17745231037398468 GKGFSVVADTPELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKGFSVVADTPELQR 15 1 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 103.39 0.0013463 292270000.0 217800.0 344810.0 315520.0 377610.0 329670.0 353990.0 355130.0 289060.0 525060.0 373240.0 False True 216627.3889998549 356286.7924079531 359942.4734509964 425415.387282774 371651.5203928213 329519.50450282835 337951.005171656 310631.1250169383 395665.9984435382 349419.5036531595 0.6199636446592959 1.019653421411789 1.030115576514247 1.217491819532345 1.0636255747238703 0.9430484018714529 0.9671784248972911 0.8889919474136645 1.1323523567141343 1.0 18.414600612280463 4.7385504137031855 9.38293034616699 1.0211101643161375 0.6185507325777398 0.6531111797417201 0.08929298612226819 0.053265572895143935 113.86642762355147 0.023349686896417678 0.13592427500845095 54770.96764196566 -4.7385504137031855 -0.4025594317383977 GKGGVTGS(ph)PEASISGSK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GKGGVT(0.001)GS(0.999)PEASISGSK;GKGGVT(0.021)GS(0.976)PEAS(0.003)ISGSK;GKGGVT(0.05)GS(0.949)PEAS(0.001)ISGSK 275.99 2.5552e-35 2880120000.0 3188470.0 3221880.0 3019070.0 2766330.0 2704700.0 4234870.0 4329500.0 3698770.0 5834210.0 4607390.0 True False 3171303.631792317 3329118.328132414 3444128.8137731333 3116547.094361793 3049127.5129871164 3942123.404711691 4120065.5447038724 3974790.999373489 4396447.119908728 4313342.425614964 0.7352311314212844 0.7718186964156394 0.7984825858758698 0.7225364431662201 0.7069059703861547 0.9139370390120726 0.9551909257741029 0.9215106539580596 1.019266890057289 1.0 22.040374821943473 2.6153085911476177 4.196178373852446 0.9594447851362531 0.7502683185372415 0.9014298402297872 0.035779990481613226 0.07390366301957609 2.177140847765011 0.012461889223426049 0.011658544738556098 412.39044208626467 -2.6153085911476177 -0.20917646659901157 GKGGVTGSPEAS(ph)ISGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GKGGVT(0.034)GS(0.43)PEAS(0.535)IS(0.001)GSK 169.58 5.1461e-09 452900000.0 539210.0 533890.0 481550.0 443420.0 472750.0 808850.0 734710.0 617460.0 1032700.0 836880.0 True False 536306.9532718624 551660.2059066802 549348.0542923654 499556.9265351233 532951.9102912182 752936.1033280964 699169.2704352424 663538.0005983498 778204.9224710348 783469.6019109852 0.6845280939601732 0.70412458193797 0.7011734124111944 0.63762132610715 0.6802458053143077 0.9610278452304805 0.8924012734251295 0.8469224574634339 0.9932803015878228 1.0 19.579517774631746 2.7446516742149654 24.964486912749706 0.9187113181644914 0.6814443761107027 0.8782802228794377 0.04758147452292947 172.44568987104682 706777.0121000771 0.015096317158817154 0.015645808983695938 555.45857314852 -2.7446516742149654 -0.23726694205378862 GKGS(ph)PRPQAPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKGSPRPQAPK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK 80.52199999999998 0.012616 5043200000.0 3577630.0 3205050.0 2939440.0 2895910.0 3155140.0 3977860.0 3952470.0 3821500.0 5505020.0 3903840.0 True False 3558368.4375920603 3311728.1517563616 3353287.6019295035 3262531.9090756583 3556928.37702007 3702879.901075234 3761273.926198338 4106679.735183805 4148381.5844887183 3654693.588954428 0.9736434398622388 0.9061575399276672 0.9175290678441926 0.8926964271193626 0.9732494094088123 1.013184774851287 1.0291625917877294 1.1236727882182556 1.1350832794919832 1.0 21.80131902441391 2.477495279860944 1.3571158690667946 1.0948065437824348 0.9224188118205102 0.7134651581795992 0.042477858385237224 0.20273812510310846 0.7552176009680772 0.021375257593631736 0.01579661516508215 300.2584787025631 -2.477495279860944 -0.17238773196192458 GKHDELADSLPCAEGEFIFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKHDELADSLPCAEGEFIFLR 21 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 197.31 5.5099000000000015e-22 348950000.0 578940.0 684240.0 601740.0 601850.0 583010.0 712070.0 661940.0 597630.0 874380.0 680570.0 False True 575823.0513662804 707014.5147681847 686459.7615821586 678044.148290929 657252.8677289968 662846.276932481 629919.4333436384 642228.1853036489 658900.7650917248 637135.439934709 0.9037686734633509 1.109676954778464 1.0774157558281552 1.064207240395248 1.0315748058157765 1.0403538013839047 0.9886742972705929 1.0079931911642865 1.0341612219204857 1.0 19.28124056238482 2.3369719158637254 7.279458300163474 1.0077223491361116 1.0441173931249355 0.06784778164856431 0.05176127054728324 0.5396657055546248 34.770470536318676 0.017493116712245568 0.014582095976331023 217.25606832653347 -2.3369719158637254 0.03639504398882387 GKHQPWQS(ph)PERPLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GKHQPWQSPERPLSR 15 2 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-2;V9GYS7;J3QRS2;V9GYU5;J3QL08 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 GKHQPWQS(1)PERPLSR;GKHQPWQS(1)PERPLSR;GKHQPWQS(1)PERPLSR;GKHQPWQS(1)PERPLSR 223.65 6.4626e-13 3321400000.0 1381670.0 1752420.0 1671180.0 1735830.0 1868200.0 1866040.0 1847660.0 1619350.0 2292600.0 1864130.0 True False 1374231.242237967 1810748.2403397404 1906467.6178430396 1955585.900021342 2106104.196311062 1737045.0469856695 1758281.627053367 1740194.1198926838 1727619.449266094 1745159.6274380144 0.7874530333110045 1.0375831596551506 1.0924316537403709 1.1205770917885858 1.206826105301859 0.995350235975687 1.007519082729765 0.9971546972166551 0.9899492413781825 1.0 20.73492757319782 GKHSYNS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 GKHSYNSR 8 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 GKHSYNS(1)R;GKHSYNS(1)R;GKHSYNS(1)R 94.465 0.006261999999999999 197653000.0 282737.0 277221.0 242139.0 303707.0 257805.0 198780.0 268875.0 242733.0 418302.0 324112.0 True False 281214.7754070341 286448.13340136677 276230.06649008236 342156.2750602201 290634.93862004817 185038.80647778822 255868.48904775473 260846.96903319928 315217.0770596292 303426.89467375615 0.9267958125775091 0.9440433212400473 0.9103677733876697 1.1276399062387192 0.9578417197741754 0.6098299449583778 0.8432623921582953 0.8596699027410253 1.0388567480102573 1.0 18.210989441013258 2.9721294728233376 24.999451772230884 0.8518298516504894 0.9791521252145913 0.14639068208204686 0.1209900802486406 1168.9133706107316 1048498.7077653438 0.03713058208573422 0.039468524850180355 937.8415566353415 -2.9721294728233376 0.12732227356410186 GKKPDIDITGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKKPDIDITGPK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 121.28 0.00021321 1118100000.0 3096300.0 2584200.0 2526780.0 2004930.0 2178410.0 3832300.0 3440300.0 3048700.0 5130400.0 3556600.0 False True 3079629.864831272 2670213.5348181124 2882528.660834524 2258753.932429895 2455817.6010523397 3567382.1212638444 3273879.545777742 3276209.4749849197 3866081.663837896 3329614.7430415475 0.9249207798792005 0.8019587072043407 0.8657243805334013 0.6783829682248946 0.7375680943822922 1.071409876688947 0.9832607669159669 0.983960526313671 1.161119817816008 1.0 21.666923827564432 2.7356803725839196 24.9929630748658 1.0296691961350741 0.7984294885852199 0.6923222921768583 0.0792472276979542 154.00381127132275 1336341.9876390616 0.025841622889889577 0.025343650524547814 544.1020630223129 -2.7356803725839196 -0.23123970754985423 GKLDDYQER ddPTM_BT-474_Trastuzumab_2h_R1 6 GKLDDYQER 9 1 Q14444-2;Q14444;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 ;;;;; 152.04 7.4253e-05 3303350000.0 4109690.0 4555790.0 4176800.0 3914480.0 4020460.0 4631320.0 4770680.0 4188340.0 5650420.0 4699810.0 False True 4087563.8856694796 4707426.716116788 4764857.134603584 4410052.766639328 4532441.749866599 4311167.749354616 4539903.982632604 4500895.198759577 4257949.702748895 4399864.1020902265 0.9290204858208272 1.06990275310559 1.0829555240899285 1.0023156771010862 1.0301322142457512 0.9798411153895699 1.0318282286209361 1.0229623220911197 0.9677457312206726 1.0 22.06902753346768 GKLDGNQDLIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GKLDGNQDLIR 11 1 P48735;P48735-2 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ;;; 158.4 2.7251e-05 2567160000.0 3805740.0 4628050.0 5356100.0 3939910.0 4254550.0 7952100.0 4611440.0 3496250.0 6429400.0 5115060.0 False True 3785250.318697466 4782091.846534699 6110192.323944224 4438702.202031923 4796341.723806466 7402390.0442298995 4388367.029788479 3757157.928597773 4844960.519546111 4788612.491576808 0.7904691234372669 0.9986383017933528 1.2759838752231636 0.9269286687614883 1.0016140859681701 1.545831920467722 0.9164172372493364 0.7846026244985644 1.0117670887064718 1.0 22.19117626255103 2.03587726904898 24.999998295491142 0.893768599222487 1.0951587712974264 0.12405874012675833 0.20301081939109616 297.0918554770089 207018.34573057832 0.0766955258025557 0.056643210248713896 108.6118644788724 -2.03587726904898 0.20139017207493948 GKLEAIIT(ph)PPPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKLEAIITPPPAK 13 1 O75367-2;O75367-3;O75367;D6RCF2 O75367-2 H2AFY Core histone macro-H2A.1;Histone H2A 1 GKLEAIIT(1)PPPAK 69.605 0.076396 622740000.0 650780.0 638570.0 666090.0 541580.0 625230.0 1126300.0 834770.0 820020.0 1418400.0 975890.0 True False 647276.2727884551 659824.4164262835 759869.6822419318 610143.9724705514 704849.3344714514 1048441.5320250175 794388.9859689223 881214.0563771875 1068854.3255862459 913607.8646985374 0.7084836917445281 0.7222184067384374 0.8317241035273547 0.6678401051986129 0.7715009488277884 1.1475837419273651 0.8695076045903417 0.9645429843885606 1.1699267999832017 1.0 19.801215544481636 2.854098167066453 6.491402072189907 1.008809239859425 0.7370774216463989 0.718484040510172 0.09042614630884312 0.1396619965429548 7.0132963172518465 0.027485523519438268 0.02921966260143054 714.657847667422 -2.854098167066453 -0.27173181821302617 GKLEEQRPER ddPTM_BT-474_Trastuzumab_2h_R1 10 GKLEEQRPER 10 2 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7;P13693-2 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 ;;;;;;;;; 163.9 3.5560000000000008e-06 14094796200.0 13135816.0 13873022.0 13091785.0 12643748.0 12591713.0 15010082.0 15574113.0 13933058.0 18006922.0 15155115.0 False True 13065094.226182347 14334777.150851112 14934994.532164868 14244445.200407313 14195193.013619825 13972470.361272413 14820733.655300768 14972813.53859495 13569357.353492754 14187902.585753279 0.920861568312543 1.0103520985015302 1.0526569689843923 1.003985269444323 1.0005138481761122 0.9848157806850752 1.044603567421089 1.0553225501865113 0.9564033352694686 1.0 23.758157994076193 4.733135524253462 5.157690527924815 1.0171529419091663 0.9168720605492306 0.4488572871303659 0.029929582612582873 0.13448631997093258 11.999436634127106 0.007301098968694401 0.04775512915432135 54092.30949763909 -4.733135524253462 -0.10028088135993563 GKLPES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 GKLPESPK 8 1 E9PKP7;P17480-2;P17480;E9PLT2 E9PKP7 UBTF Nucleolar transcription factor 1 1 GKLPES(1)PK;GKLPES(1)PK;GKLPES(1)PK;GKLPES(1)PK 129.82 0.00065066 2795250000.0 3944920.0 2909390.0 2538190.0 2341350.0 2420340.0 3991470.0 3948740.0 3726320.0 6551000.0 3858660.0 True False 3923680.9890418123 3006227.287386604 2895545.089657027 2637764.6699359734 2728555.9525208855 3715549.073809722 3757724.3605483263 4004396.920269556 4936593.82890264 3612397.0152349705 1.0861710306187355 0.8321973677611021 0.8015578236404572 0.7301978876661204 0.7553311391337768 1.0285550171090598 1.040230169801506 1.1085151779777693 1.366570121745474 1.0 21.784525028154757 2.300864470286874 1.6760331468752434 1.159471047505653 0.8353239912031724 0.527088456480316 0.12863909349370606 0.28635843848487197 1.619890599365899 0.06614228024239951 0.043498705177858775 199.92378727147218 -2.300864470286874 -0.32414705630248075 GKLPIVNEDDELVAIIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKLPIVNEDDELVAIIAR 18 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 ; 192.62 1.5079e-14 261957000.0 295500.0 356270.0 326750.0 326870.0 341650.0 380400.0 392580.0 349160.0 456800.0 398290.0 False True 293909.0608331366 368128.2315802373 372753.55983808695 368251.708485264 385157.10238179786 354103.84336528135 373589.4055987631 375216.0921985547 344227.7608064 372870.79120677535 0.7882329958909263 0.9872809570007105 0.9996855978761195 0.9876121089920668 1.0329505862748287 0.9496690320506044 1.0019272477462287 1.0062898490498249 0.9231824238426566 1.0 18.50831626261411 4.738469585074251 7.252740306665595 0.9899871354954352 0.7856752264714214 0.8070769808148633 0.0292277560150426 0.03937875518987725 17.9047718851333 0.006550977002533144 0.039508605640494875 54760.77490303146 -4.738469585074251 -0.20431190902401375 GKLPSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 GKLPSYK 7 1 Q12996;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 75.38 0.039789 325470000.0 256030.0 357600.0 298200.0 282300.0 277530.0 294200.0 300450.0 289400.0 396930.0 346460.0 False True 254651.56292760686 369502.49982623535 340183.9679991355 318039.1510551289 312871.8004508136 273862.6464723076 285916.08566954115 310996.4975434237 299111.9200895017 324348.6261806707 0.7851168229883584 1.1392140123337928 1.0488219790073787 0.9805472426387671 0.9646157720320844 0.8443465591241904 0.8815085454077995 0.9588340212983992 0.9221926530463814 1.0 18.307185802550038 3.110510012715071 3.208531811768144 0.9181057956697306 1.0043713955787188 0.0943223037373695 0.09179678010143918 0.46152230523366666 9.451070758000537 0.02699297420785437 0.03311579755344785 1289.7632932143847 -3.110510012715071 0.08626559990898819 GKLS(ph)AEENPDDSEVPSSSGINSTK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKLSAEENPDDSEVPSSSGINSTK 24 1 A0A494C1S7;Q9Y5Q9;Q9Y5Q9-2 A0A494C1S7 GTF3C3 General transcription factor 3C polypeptide 3 1 GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK 249.0 2.1488e-38 4969820000.0 4261820.0 3503610.0 3323880.0 2944920.0 3106810.0 4504900.0 4493530.0 4221430.0 6073000.0 4362000.0 True False 4238874.834652712 3620225.540873028 3791853.4123171205 3317746.570050547 3502443.8379944195 4193486.866393939 4276160.786948426 4536454.5425871955 4576390.524030787 4083613.425503919 1.0380205942558418 0.8865250364452142 0.9285534690025672 0.8124536346486166 0.8576825162049263 1.026905935856664 1.047151221573023 1.1108922588644383 1.120671828398169 1.0 21.961414869549362 2.550388563584979 3.3948210848889198 1.0791276116630242 0.9003344825729359 0.6067996945891949 0.06324625714027646 0.1599897358718813 3.5824757231569935 0.022409124626967064 0.02029758314298543 355.13098308237596 -2.550388563584979 -0.17879312909008827 GKMDMEEIIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKMDMEEIIQR 11 1 Q9H074;Q9H074-3;Q9H074-2;D6REB4 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 0 ; 88.42 0.011849 999670000.0 1164600.0 1163160.0 1058000.0 1080500.0 1041170.0 1245240.0 1107950.0 1066920.0 1415440.0 1250290.0 False True 1158329.9229992244 1201875.0774549309 1206957.2036991452 1217291.1892138398 1173756.8280019222 1159159.4897796605 1054354.2257199811 1146538.9881099837 1066623.777924279 1170495.4217728782 0.9896065387806239 1.026808866654535 1.0311507257935624 1.0399794536317648 1.0027863468479905 0.990315270113532 0.9007760356063717 0.9795330821314884 0.9112583937395747 1.0 20.158687860887742 2.5601516505811523 3.0175920030927235 0.9479353789425385 1.02077629541502 0.5309263392488853 0.030631852218555317 0.18690011951033159 3.3146661076572417 0.010141576817093625 0.009164757007928716 363.2048595414106 -2.5601516505811523 0.07284091647248137 GKNDGTVQGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GKNDGTVQGR 10 1 E7EX90;Q14203-3;Q14203-4;Q14203-6;Q14203;Q6AWB1;C9J1B7;C9JZA4;C9JTE5;C9JJN7;C9JJD0;C9JKG6;E9PCY0 E7EX90 DCTN1;DKFZp686E0752 Dynactin subunit 1 0 ;; 136.5 0.00010582 375291000.0 466120.0 471650.0 451980.0 451210.0 462850.0 419660.0 546310.0 499890.0 589420.0 583090.0 False True 463610.46171080007 487348.5851315541 515614.8553194137 508333.139736396 521791.20397311595 390649.89197338035 519882.8981931335 537194.330189986 444165.33882335405 545876.6969915351 0.8492952057962445 0.8927814428010129 0.9445628622014787 0.9312233743223494 0.9558774112337814 0.7156376048407103 0.9523815562348419 0.9840946373981527 0.8136733831490918 1.0 19.058215585420527 -1.526339017862157 3.0753987840384407 1.0034243517327195 0.9013187239373259 0.13850414636002883 0.0775491939520543 30705944.054273777 29167830.147391006 855727.1286874043 0.018640582276875026 0.029761922547165535 1.526339017862157 -0.10210562779539356 GKNENESEKR ddPTM_BT-474_Trastuzumab_2h_R1 5 GKNENESEKR 10 2 P47813;O14602;A6NJH9 P47813 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal 0 ;;;; 168.3 2.8002e-06 3592140000.0 2335253.0 1824323.0 1748741.0 1538521.0 1616897.0 1449815.0 2102180.0 2043690.0 3276000.0 2339900.0 False True 2322680.2573189996 1885044.4882284568 1994948.532470741 1733297.6008518888 1822799.2488506436 1349592.70154741 2000489.5222925502 2196200.5254475456 2468673.6961509776 2190565.578710825 1.0603107617010605 0.8605286719322179 0.9107002099634893 0.7912557458663053 0.8321135265548103 0.6160932658960441 0.9132296890512919 1.0025723707116938 1.1269572206114105 1.0 21.06287197442773 1.7221218525125468 3.0701447263740373 1.059526570580281 0.8420383291312485 0.39723551768537746 0.10850448905135283 0.22050510058672926 4.510043728554657 0.0652433636337318 0.03015469325562749 52.73778101063068 -1.7221218525125468 -0.21748824144903245 GKNS(ph)DEEAPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKNSDEEAPK 10 1 Q9UNL4-8;Q9UNL4-3;Q9UNL4-4;Q9UNL4-7;Q9UNL4-5;Q9UNL4-6;Q9UNL4-2;Q9UNL4 Q9UNL4-8 ING4 Inhibitor of growth protein 4 1 GKNS(1)DEEAPK;GKNS(1)DEEAPK;GKNS(1)DEEAPK 146.96 1.6798e-05 2129370000.0 3501410.0 2359910.0 1930810.0 1876800.0 1892790.0 2323280.0 2887740.0 2811860.0 4673700.0 2853180.0 True False 3482558.797603225 2438458.1777542816 2202651.265098624 2114402.68756736 2133825.5870547155 2162677.1220128564 2748048.983961928 3021695.2715357696 3521929.259371431 2671087.609669708 1.3037980427882179 0.912908348242388 0.8246271133618831 0.7915886696913004 0.7988602018630803 0.8096616203016572 1.028812748040764 1.131260262896961 1.3185375300389093 1.0 21.348995865388243 1.90112098531223 2.7890183244933504 1.1679626257199534 0.8942039416197413 0.31271855597091824 0.15938875608351716 0.30458724126289993 4.236883210630342 0.0872381548909565 0.04570773551611341 79.6381174570557 -1.90112098531223 -0.2737586841002121 GKPDAAK ddPTM_BT-474_Trastuzumab_2h_R1 6 GKPDAAK 7 1 P09429 P09429 HMGB1 High mobility group protein B1 0 ;;;;; 89.698 0.016125999999999998 4773230000.0 7919120.0 6522480.0 5556490.0 5159610.0 5135210.0 5640910.0 7372230.0 6838360.0 12052510.0 8443110.0 False True 7876484.337816939 6739576.8038775725 6338795.494123116 5812816.0969732655 5789148.554725692 5250967.168973838 7015607.070246507 7348673.1476884745 9082330.405859774 7904263.491289851 0.9964855481470825 0.8526508271522436 0.801946380090718 0.7354026220632361 0.7324083465973873 0.6643208661705384 0.8875725205741681 0.9297100426606967 1.149041958921043 1.0 22.914199609774233 1.5987478289557484 2.305042582791515 1.0690366198418644 0.7964657415456707 0.5562578139288418 0.09389399869800792 0.19785089292636085 2.3139758789408655 0.07200752115368043 0.026860663315973712 39.69609890114538 -1.5987478289557484 -0.27257087829619364 GKPELR ddPTM_BT-474_Trastuzumab_2h_R1 4 GKPELR 6 1 J3KTJ3;P62829;J3KT29;J3QQT9;C9JD32;B9ZVP7 J3KTJ3 RPL23 60S ribosomal protein L23 0 ;;; 100.82 0.033949 3595160000.0 8111830.0 9477060.0 9083420.0 8887250.0 8269730.0 9357330.0 10088320.0 9163020.0 11768860.0 10157550.0 False True 8068156.80858903 9792498.21309625 10362286.58149801 10012374.938769724 9322831.096970065 8710479.801885512 9600309.420475112 9846811.081272764 8868582.147644486 9509286.462683933 0.8484502849135798 1.0297826499941598 1.0897018006725736 1.0529049659046446 0.9803922863775794 0.9159972029517593 1.0095720071267564 1.0354942108341498 0.9326233027521381 1.0 23.1809056606342 GKPLISR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKPLISR 7 1 Q9Y6Q5;K7EMG5;Q9Y6Q5-2 Q9Y6Q5;Q9Y6Q5-2 AP1M2 AP-1 complex subunit mu-2 0 ; 108.46 0.006609899999999999 1281360000.0 1482820.0 1786750.0 1876910.0 1715930.0 1449190.0 1813920.0 1747060.0 1590930.0 2197000.0 1857470.0 False True 1474836.661876788 1846220.8936368185 2141162.6136058266 1933166.5620617352 1633735.7564779073 1688527.9799083886 1662548.033382687 1709653.2751788471 1655578.7882917267 1738924.6743399268 0.8481314249201833 1.0617026262725382 1.2313141823803173 1.1117023011911313 0.9395092154282371 0.9710184718319279 0.9560782349665425 0.9831669539267475 0.9520704448685582 1.0 20.729764009553552 3.2355562626577616 24.997020583507815 0.96675377463982 1.075112033994906 0.21328168572572348 0.08938831453034421 115.25868331764975 958983.4675165496 0.026561980999087093 0.03306031508867228 1720.1101663146148 -3.2355562626577616 0.10835825935508603 GKPLPEYHVR ddPTM_BT-474_Trastuzumab_2h_R1 3 GKPLPEYHVR 10 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;; 108.43 0.0012931 1811990000.0 3846470.0 4691930.0 4367840.0 4285280.0 3868100.0 4398610.0 4312260.0 4130950.0 6135530.0 4905330.0 False True 3825761.03290299 4848098.053718416 4982793.90605413 4827796.008620347 4360679.606975072 4094544.4439141992 4103659.509367071 4439222.465539061 4623510.843389868 4592267.639735698 0.8330875578330136 1.055708951231214 1.0850399621614624 1.0512880318313078 0.9495700052939522 0.8916171192822411 0.8936019917173756 0.9666732894937621 1.0068034370174401 1.0 22.130775294801953 3.1633375557472436 8.308070329361938 0.9439526097302605 1.0153243481111147 0.108930545996068 0.07341410144267525 0.47309715492432425 46.44530639047367 0.021627715967230916 0.025918935839776745 1456.5907771118532 -3.1633375557472436 0.0713717383808542 GKPPPLLPSVLGPAGGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKPPPLLPSVLGPAGGDR 18 1 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 0 78.08800000000002 0.011399 369480000.0 314780.0 363530.0 344650.0 328060.0 286030.0 421730.0 368520.0 381420.0 499530.0 419150.0 False True 313085.2594553458 375629.8762914747 393173.7242484978 369592.36236325 322454.2250673659 392576.79774563655 350693.27971688885 409883.4972115153 376427.5248590653 392399.4881476305 0.7978737712765703 0.9572639303498616 1.0019730813221042 0.9418777891580739 0.8217498615748718 1.0004518599115486 0.8937149265213855 1.0445566561424946 0.9592966765477632 1.0 18.581963634119965 1.7446099192294018 24.999999999680732 1.0025302560963767 0.9218473010780721 0.2528290833096867 0.06639013899537775 1.7544713698732983 7275.6970916422715 0.030079257295787535 0.016680518470474463 55.54051714803926 -1.7446099192294018 -0.08068295501830458 GKPQER ddPTM_BT-474_Trastuzumab_2h_R1 2 GKPQER 6 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ; 74.717 0.072587 124109000.0 331760.0 301410.0 286660.0 273770.0 271350.0 238750.0 309130.0 290620.0 366110.0 368370.0 False True 329973.84102200146 311442.24964380736 327019.236306613 308429.2539297298 305904.814082543 222245.7744570473 294176.20090872084 312307.54013845825 275887.09612265986 344860.3112225766 0.9568333330449057 0.9030968177802262 0.94826579245169 0.8943599593595049 0.8870397785064594 0.6444515858295083 0.8530300279142772 0.9056059220943276 0.7999966570365916 1.0 18.395652578019284 3.202175878019706 3.256164169593425 0.836783366680655 0.9283604882617116 0.17213601759883101 0.08584378485332621 0.4122214371271243 8.995055235694112 0.02560385712897811 0.0328719910789737 1592.8536609394944 -3.202175878019706 0.09157712158105658 GKPSEQLT(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GKPSEQLTPTR 11 1 Q14687;Q14687-2;Q14687-3;H0Y613 Q14687 GSE1 Genetic suppressor element 1 1 GKPSEQLT(0.989)PT(0.011)R;GKPSEQLT(0.915)PT(0.085)R;GKPSEQLT(0.977)PT(0.023)R 123.68 0.00059006 1492030000.0 1890730.0 1738300.0 1524360.0 1579000.0 1472880.0 1834240.0 1921890.0 1680910.0 2219320.0 1979120.0 True False 1880550.519759849 1796158.2646754582 1738976.63802536 1778901.2381014808 1660442.5375562783 1707443.306136521 1828920.8383672314 1806348.0396880312 1672398.3233644029 1852810.8671901233 1.014971659040296 0.9694234292782503 0.9385613333877956 0.960109458338438 0.8961748697396292 0.9215421478642021 0.9871060617972722 0.9749230597008774 0.9026276523845498 1.0 20.821284189549 -0.19263494235479622 7.324823914920073 1.0000001940898644 0.9527804463480162 0.14058499817267633 0.03572744317126566 0.0 0.0 0.03511682654078992 0.00827711539358143 0.6417487887461276 0.19263494235479622 -0.04721974774184823 GKPVDSQTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKPVDSQTSR 10 1 Q9Y450;Q9Y450-4;E9PN23 Q9Y450 HBS1L HBS1-like protein 0 ; 121.29 0.00047335 189903000.0 123875.0 153844.0 122182.0 134228.0 152886.0 147363.0 177001.0 152764.0 203400.0 179735.0 False True 123208.07076380645 158964.60453933824 139384.16357501782 151221.25103729306 172355.12587368223 137176.14266518905 168438.78542051744 164164.02539987394 153274.79542036258 168264.15842112456 0.7322300359144007 0.9447324137888486 0.8283651425407716 0.8987133829108322 1.0243127680365474 0.815242794141996 1.00103781459481 0.9756327606560811 0.9109176717049438 1.0 17.360368378526754 6.36727728034972 0.4687729938121488 0.9598069431341232 9.550400970052198e-23 0.42390165889835807 0.06883426489356256 19.919467123210627 1.0081340977183033 0.03845582420962516 14.68100093062158 2329578.1291386243 -6.36727728034972 -0.9598069431341232 GKQS(ph)PPGPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKQSPPGPGK 10 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 GKQS(1)PPGPGK;GKQS(1)PPGPGK;GKQS(1)PPGPGK 73.92699999999998 0.026358 1864730000.0 4492400.0 3445300.0 3171190.0 2977460.0 2761180.0 4084800.0 4656200.0 3861400.0 5952200.0 4461400.0 True False 4468213.4175525615 3559974.7277721656 3617665.9875223907 3354406.130714148 3112799.9062039284 3802427.3905849103 4430961.817588677 4149557.2757919035 4485360.0653937245 4176669.6324032964 1.0698029317155995 0.8523476935195665 0.8661604354474046 0.8031293891884836 0.7452827683698777 0.9103969730057286 1.0608839596056483 0.9935086183496413 1.0739082714600063 1.0 21.993921602568033 2.374321181886002 4.924764011134147 1.0276181311260597 0.8598074144959692 0.47801719923788144 0.08124516474524139 0.18354509175058123 7.305324054415272 0.02933416798186882 0.024308235370546823 236.76700572981193 -2.374321181886002 -0.1678107166300905 GKS(ph)EEELEASK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKSEEELEASK 11 1 Q7RTP6;J3QR21;A0A5F9ZHV5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 GKS(1)EEELEASK;GKS(1)EEELEASK 129.62 0.00014609 891490000.0 1399920.0 805610.0 704380.0 704050.0 654560.0 1088080.0 954760.0 937200.0 1822000.0 1094630.0 True False 1392382.9862657338 832424.2418484716 803550.5814192856 793182.6578121268 737914.3361189218 1012863.5906648133 908574.6112626106 1007138.6230051704 1372992.5135491672 1024769.7762401077 1.3587276074577486 0.8123036619040872 0.7841279085801321 0.7740105887220086 0.7200781611908366 0.9883815996028119 0.8866133958362643 0.9827950105050656 1.3398058231056469 1.0 19.96686840102239 1.4506979571270657 4.817520562727383 1.172908013441809 0.8897455612053404 0.23680699554262075 0.18659834201325298 0.24327597003391926 11.106875151109309 0.12073464052086179 0.04649988385476928 28.229160120656395 -1.4506979571270657 -0.28316245223646863 GKT(ph)PEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKTPEEIR 8 1 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2 E5RJR5 SKP1 S-phase kinase-associated protein 1 1 GKT(1)PEEIR 90.913 0.02079 298010000.0 591690.0 555120.0 522750.0 474170.0 462350.0 584870.0 540810.0 495080.0 653490.0 521100.0 True False 588504.4067829393 573596.8336228743 596348.6561755469 534199.8733822552 521227.531936848 544439.313535889 514648.95420517423 532025.3835653012 492446.14581736864 487842.9518638444 1.2063398774841565 1.1757817376092041 1.2224193337162041 1.09502427234277 1.06843304785988 1.1160134864218363 1.0549480160344948 1.0905669161205551 1.0094358111272026 1.0 18.896057259452796 5.2031859746938345 0.21488721454441287 0.9898200671848566 1.4669680305987338 0.7998650572737644 0.03271697161611321 6.816420690418201 0.23935414168853225 0.06053993772923058 0.8992012676761301 159656.2685029644 -5.2031859746938345 0.4771479634138772 GKT(ph)PEEIRK ddPTM_BT-474_Trastuzumab_2h_R1 3 GKTPEEIRK 9 2 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2 E5RJR5 SKP1 S-phase kinase-associated protein 1 1 GKT(1)PEEIRK;GKT(1)PEEIRK;GKT(1)PEEIRK 118.87 0.033638999999999995 5469300000.0 5924100.0 4855810.0 4608570.0 4366830.0 4346740.0 5753700.0 5612100.0 5804500.0 7869100.0 5461700.0 True False 5892205.303829385 5017432.700450865 5257416.597591466 4919670.230258827 4900271.573853523 5355960.261752933 5340621.282696066 6237661.2646537665 5929865.745537744 5113129.630003375 1.1523676750251872 0.981284079130134 1.0282189144475096 0.9621641902819467 0.9583702992975534 1.047491585256249 1.0444916654093397 1.219930202444261 1.159733113500944 1.0 22.285775171565017 1.9146373583685243 6.496155455961604 1.148022098589945 1.016973123980302 0.2748840958367388 0.07372006046546727 0.242000258618213 15.257723778297507 0.030958890936695665 0.019028178622638964 82.15563530420157 -1.9146373583685243 -0.13104897460964304 GKTEESGEDRGDGPPDRDPT(ph)LSPSAFILR ddPTM_BT-474_Trastuzumab_2h_R1 4 GKTEESGEDRGDGPPDRDPTLSPSAFILR 29 3 Q9H7N4;M0R3G4;M0R2L3;M0R232 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 GKTEESGEDRGDGPPDRDPT(0.611)LS(0.323)PS(0.066)AFILR;GKTEESGEDRGDGPPDRDPT(0.85)LS(0.142)PS(0.008)AFILR;GKTEESGEDRGDGPPDRDPT(0.608)LS(0.381)PS(0.011)AFILR;GKTEESGEDRGDGPPDRDPT(0.535)LS(0.429)PS(0.036)AFILR 148.66 4.6934e-08 1575810000.0 883491.0 902280.0 842860.0 881238.0 843066.0 1033890.0 1076956.0 909182.0 1313670.0 1097497.0 True False 878734.3826210785 932311.844360223 961527.3617295476 992802.6404446318 950425.4578563228 962419.617815275 1024859.5239085571 977029.7775726507 989933.630776145 1027453.8018455445 0.8552543978548413 0.9074002574963229 0.9358351295235097 0.9662747255996609 0.9250298710746303 0.9367035443214545 0.9974750417660362 0.9509233172505464 0.9634823765292371 1.0 19.970642095740406 7.0226896605192 0.44474240750336447 0.969900645210871 3.0563733705978964e-18 0.7414787971569133 0.020724596037274914 18.11627785646572 0.5219192411005992 0.012734429827000432 14.114261182313404 10536337.185101591 -7.0226896605192 -0.969900645210871 GKTEESGEDRGDGPPDRDPTLS(ph)PSAFILR ddPTM_BT-474_Trastuzumab_2h_R1 5 GKTEESGEDRGDGPPDRDPTLSPSAFILR 29 3 Q9H7N4;M0R3G4;M0R2L3;M0R232 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 GKTEESGEDRGDGPPDRDPT(0.439)LS(0.542)PS(0.019)AFILR;GKTEESGEDRGDGPPDRDPT(0.269)LS(0.696)PS(0.035)AFILR;GKTEESGEDRGDGPPDRDPT(0.019)LS(0.972)PS(0.01)AFILR;GKTEESGEDRGDGPPDRDPT(0.025)LS(0.95)PS(0.025)AFILR;GKTEESGEDRGDGPPDRDPT(0.16)LS(0.817)PS(0.023)AFILR 171.5 1.5694e-12 983635000.0 494061.0 523697.0 499206.0 499281.0 520944.0 610887.0 616132.0 526793.0 743220.0 647425.0 True False 491401.0304713377 541127.9380634777 569489.865623663 562489.9234075652 587283.1305230008 568657.8195633186 586327.3413071914 566104.9686606517 560063.389637768 606105.7822115713 0.8107512663520606 0.8927945483196001 0.9395882407616976 0.9280391969783564 0.9689449395782201 0.93821546708957 0.9673680049178677 0.9340035770571865 0.9240357146803602 1.0 19.209210080270044 4.908422612923578 1.195883268761803 0.949920059974876 0.7011720137037515 0.8032940467011742 0.021560077761639828 0.8423384694941649 0.7871389986210909 0.005695326514926048 0.28575112111939605 80988.36153944368 -4.908422612923578 -0.24874804627112457 GKTPATPTSQFVFSFPVSVGVHSAPSSLPYLHS(ph)PITTSPSC ddPTM_BT-474_Trastuzumab_2h_R1 1 GKTPATPTSQFVFSFPVSVGVHSAPSSLPYLHSPITTSPSC 41 1 Q13115-2;Q13115 Q13115-2 DUSP4 Dual specificity protein phosphatase 4 1 GKTPATPTSQFVFSFPVSVGVHSAPSSLPY(0.024)LHS(0.756)PIT(0.066)T(0.066)S(0.077)PS(0.01)C 173.41 1.9511e-20 204830000.0 64878.0 113040.0 122350.0 116920.0 116950.0 130780.0 124290.0 84634.0 96097.0 110320.0 True False 64528.70405662347 116802.46806587701 139575.81651473587 131722.06001192232 131842.88928304182 121739.48642300606 118277.61786609176 90949.81884274405 72415.18198382793 103279.28315029605 0.6247981404239491 1.1309380207054835 1.3514406012251237 1.2753967300512266 1.2765666575278112 1.1787406216389593 1.145221134948909 0.8806201599055478 0.7011588362638665 1.0 16.656191366647864 1.6996659483571956 3.9262617200468934 0.8332078598433236 1.1615935418917 0.2889088289224281 0.19927592382798856 0.21757387637288012 7.774816800716379 0.11339829124424304 0.053936573399266406 50.08018774852029 -1.6996659483571956 0.3283856820483765 GKTPEEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GKTPEEIR 8 1 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ;;; 84.213 0.016062 1624210000.0 3981660.0 4598280.0 4533990.0 4091740.0 3937860.0 4714910.0 4711940.0 4423090.0 6188800.0 4819000.0 False True 3960223.1849640175 4751330.970081047 5172336.381852442 4609753.864464447 4439323.129475156 4388979.369404301 4484005.460841197 4753163.435795925 4663653.165671289 4511447.294246535 0.8778165689787631 1.0531722217259274 1.1464915900599664 1.021790472947181 0.9840130760558016 0.9728539608567703 0.9939172882634948 1.0535784030676034 1.033737703556653 1.0 22.1051589006486 -1.640429110813675 2.6610607316041754 0.9978097625821362 1.0198682532659027 0.00043976754090824244 0.06543938081268647 298926532.2429369 207772353.28191552 4395867.329996017 0.015886940427831862 0.022886052464237062 1.640429110813675 0.02205849068376653 GKVEEVELPVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GKVEEVELPVEK 12 1 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6;Q99873-5;H0YDE4;E9PNR9;Q9NR22-2;Q9NR22 E9PKG1 PRMT1;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 0 ; 127.26 0.00024888 830330000.0 2233000.0 2072110.0 1922360.0 1777690.0 1794070.0 2399200.0 2463100.0 2322600.0 3388000.0 2490600.0 False True 2220977.776109622 2141078.928733056 2193011.5785473413 2002745.3717293371 2022534.1802139974 2233348.951109311 2343950.4430442546 2495924.2059238283 2553072.796874088 2331647.775690059 0.9525357128403821 0.9182685957356472 0.9405415352232229 0.8589399276383491 0.8674269764503437 0.9578414777713773 1.0052763832867313 1.0704550798566268 1.0949650386703442 1.0 21.15291843734601 2.2014447173053684 2.16033803772629 1.0602329260744796 0.9079498198298455 0.7602589534289739 0.036176712684169506 0.14455561126322392 1.3577675790448978 0.017730732423512457 0.011484070878636633 159.01742527149182 -2.2014447173053684 -0.15228310624463415 GKYS(ph)PTVQTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 1 GKYS(0.956)PT(0.044)VQTR 119.96 0.00037712 1049900000.0 1236000.0 1127300.0 1170000.0 1014900.0 1065600.0 1379500.0 1146900.0 1091900.0 1671100.0 1312100.0 True False 1229345.513332511 1164821.4990327584 1334725.8301776932 1143386.2359399593 1201297.8436939681 1284138.4119937038 1091420.0654165302 1173383.1225558533 1259279.7965927639 1228360.6546546726 1.0008017667076086 0.94827320837643 1.0865911612521673 0.9308229074313666 0.9779683508600228 1.0454082904134632 0.8885176037516113 0.9552431674765136 1.02517106178949 1.0 20.22830277684856 GKYSPT(ph)VQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 1 GKYS(0.31)PT(0.69)VQTR;GKYS(0.255)PT(0.744)VQTR 147.42 6.5404e-05 1208870000.0 1022790.0 987990.0 843370.0 848540.0 855260.0 1058950.0 927340.0 891090.0 1189160.0 970520.0 True False 1017283.4122826512 1020874.649897434 962109.1652965477 955965.0769972339 964172.2914768222 985747.2790001705 882481.0214171817 957587.6606633343 896107.4519276237 908580.5826960239 1.119640273693803 1.1235928538866644 1.0589145130547353 1.052152219851107 1.0611852265385657 1.0849310427427037 0.9712743571941663 1.05393806438378 0.9862718497335825 1.0 19.793254948280193 7.9999999999993445 0.200531271363122 0.9884000012420531 1.6794791219141465 0.6412661070327607 0.029619226451098386 31.27563894743622 0.3782835743209203 0.05133336273834594 6.80463684355337 99999999.99984907 -7.9999999999993445 0.6910791206720934 GLAAGS(ph)AETLPANFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLAAGSAETLPANFR 15 0 Q13136-2;A0A2R8Y7R9;Q13136 Q13136-2 PPFIA1 Liprin-alpha-1 1 GLAAGS(0.977)AET(0.023)LPANFR 97.223 0.0035313 0.0 66376.0 73610.0 77538.0 82659.0 76387.0 86401.0 75765.0 81721.0 85095.0 79498.0 True False 66018.63899106695 76060.06435181537 88454.67642762221 93123.6209247817 86114.43166877907 80428.30223607694 72099.95749959325 87819.43599082975 64124.47746458092 74424.36957833805 0.8870567445193694 1.0219779459704472 1.1885176445400192 1.2512517264491045 1.157073041487254 1.080671595765675 0.9687681321062699 1.1799822623743186 0.8616059205860574 1.0 16.183487475521563 2.468486028562783 23.841517147610414 1.0321780016187474 1.1108561692864043 0.11324626005621508 0.11910537656107774 309.58501400220376 854737.6311104672 0.04338414636120094 0.03635902830646036 294.0939080971012 -2.468486028562783 0.0786781676676569 GLAEDIENEVVQITWNR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLAEDIENEVVQITWNR 17 0 Q15029;Q15029-3;Q15029-2;K7EP67 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ; 172.1 3.0015e-13 58538000.0 45184.0 56802.0 48543.0 58449.0 59460.0 51494.0 54510.0 45681.0 52617.0 56029.0 False True 44940.73436441435 58692.6202324659 55377.432456680144 65848.63740708902 67031.87855296857 47934.34098383749 51873.14305157824 49089.94818341786 39650.24538167759 52453.18125115975 0.8567780503002512 1.1189525369572926 1.0557497397825748 1.255379289423615 1.2779373329522599 0.9138500247356808 0.9889417917894411 0.9358812375623541 0.7559168850373763 1.0 15.678742653516755 2.701468502577283 24.094351407276932 0.9226046790985173 1.118026266810982 0.3773511425496282 0.12449725043711479 413.19610909638453 268403.8864659465 0.04136974415832024 0.03900501383808228 502.8847925588206 -2.701468502577283 0.19542158771246465 GLAGPPAS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 6 GLAGPPASPGK 11 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK 186.46 4.2131e-06 4942340000.0 5187230.0 5133430.0 4729580.0 4333950.0 3964000.0 5963720.0 5939220.0 5116440.0 7466510.0 5209270.0 True False 5159302.53003543 5304293.11432604 5395463.753753683 4882627.625630101 4468791.903531239 5551462.073486848 5651917.238576316 5498254.733555885 5626488.656608122 4876809.928719577 1.0579256943462674 1.0876563146513074 1.1063510435335502 1.001192930828873 0.9163350569015379 1.1383388228428255 1.158937362986432 1.1274285473330863 1.1537231794648548 1.0 22.21750631446045 GLALHDILTEIHLFVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLALHDILTEIHLFVHR 17 0 P40937-2;P40937 P40937-2 RFC5 Replication factor C subunit 5 0 ; 330.52 1.8890999999999996e-72 211100000.0 81694.0 107702.0 82101.0 100903.0 88477.0 104079.0 99886.0 43041.0 100378.0 83252.0 False True 81254.16858105667 111286.79596276626 93660.10716531529 113677.30945418232 99744.02150573499 96884.2637056128 95054.13257842508 46252.93797776951 75641.18689628887 77938.7860843768 1.0425382875875258 1.427874381341875 1.2017137021343716 1.4585460611500272 1.2797738650657422 1.2430815075914265 1.2195998597606992 0.5934521218703088 0.9705204647965578 1.0 16.25005384090387 1.8688681844425654 6.680432885132095 0.8226439135532227 1.2825766928304474 0.6140785195667358 0.1497462849997042 0.13414470764744713 6.629717951090428 0.061073291027346585 0.03738506688855069 73.93808266895999 -1.8688681844425654 0.45993277927722465 GLAPDLPEDLYHLIK ddPTM_BT-474_Trastuzumab_2h_R1 6 GLAPDLPEDLYHLIK 15 0 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 ;;;;; 200.19 7.0437e-09 7605656000.0 3747334.0 4074663.0 3742674.0 3671415.0 3687033.0 4209698.0 4273043.0 3828560.0 5213945.0 4256969.0 False True 3727158.770111947 4210285.694769205 4269609.967294417 4136215.762561335 4156554.79779326 3918691.4858231805 4066339.585480553 4114266.5882337564 3929038.1180335493 3985285.593845479 0.9352300311595835 1.0564577106522042 1.0713435378101945 1.0378718576527963 1.0429753903239138 0.983290003575869 1.0203383144636475 1.0323643039754702 0.9858862120449301 1.0 21.926251683768516 2.770108306406933 24.85388734933363 1.0098363620986828 1.0331838163888694 0.08311071687612037 0.03701824976959521 1674.5209505604873 1319217.7428020528 0.011312061931624888 0.011995906438224976 588.9905222769947 -2.770108306406933 0.023347454290186587 GLCNFLMSDEEYDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLCNFLMSDEEYDDR 15 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 0 ;;; 267.67 4.1509e-25 608230000.0 398777.0 512980.0 473150.0 533860.0 467990.0 490690.0 490610.0 405478.0 512250.0 510210.0 False True 396630.0289402901 530054.2291970422 539765.4073064753 601446.6212621011 527585.7525059493 456769.75526001526 466877.3199877965 435736.8273355645 386012.85129833216 477647.96098724223 0.8303814971187199 1.1097173493664294 1.1300485951847123 1.259183897737115 1.1045493660550578 0.9562895533269437 0.977450671039851 0.9122551814833411 0.8081534578321845 1.0 18.865588180395623 2.6419812928447644 3.3845901144746495 0.9226958842829194 1.1002968201918861 0.3325069243423334 0.11021246666217506 0.28763384475050063 6.249690304582501 0.03867286838984232 0.03645291000259841 438.5118085523554 -2.6419812928447644 0.17760093590896675 GLCT(ph)NPGHWGS(ph)HPES(ph)PPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLCTNPGHWGSHPESPPKK 19 1 Q17RG1 Q17RG1 KCTD19 BTB/POZ domain-containing protein KCTD19 3 GLCT(1)NPGHWGS(1)HPES(1)PPKK 40.085 0.097271 256120000.0 55329.0 116320.0 129620.0 151630.0 145120.0 108010.0 131040.0 116880.0 96303.0 144540.0 True False 55031.11481162979 120191.64088307522 147869.3693227629 170826.342453026 163600.17180637052 100543.52292819144 124701.09457858762 125602.17910461422 72570.41604408647 135315.33345308027 0.40668794442805317 0.8882337117009057 1.0927761514480225 1.2624315226792753 1.2090290703314701 0.743031261590574 0.9215592305496327 0.9282183762874587 0.5363059321673238 1.0 17.045965804093512 2.6988701889911524 24.992991274716896 0.8383460840940827 0.9900512237915936 0.07526178138651518 0.24996418856401098 1542.1018127192715 971057.2445450746 0.08486620188724237 0.08001375782983582 499.8850965422569 -2.6988701889911524 0.15170513969751087 GLCTSPAEHQYFMT(ph)EYVATR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLCTSPAEHQYFMTEYVATR 20 0 Q13164-2;Q13164;Q13164-4;Q13164-3;I3L0J8;C9JUK9 Q13164-2 MAPK7 Mitogen-activated protein kinase 7 1 GLCTSPAEHQYFMT(0.618)EY(0.376)VAT(0.006)R 70.094 0.053994000000000014 78899000.0 27302.0 38182.0 35880.0 38765.0 37652.0 34661.0 30653.0 21979.0 27279.0 27465.0 True False 27155.009065537346 39452.86478849359 40931.59212544929 43672.645025334976 42446.7590191115 32264.96665321771 29170.19728416856 23619.184587100568 20556.45596987255 25712.160186030513 1.0561154282280312 1.5344049081464748 1.591915725061776 1.6985210386586826 1.650843752994855 1.2548524285698623 1.1344903373780633 0.9185997759897644 0.7994838170400373 1.0 14.65016320165238 2.2259954772711708 1.7821760242686948 0.9036904409621284 1.5192534617506261 0.6821599064515957 0.17684413525292159 0.2042116392638138 1.292747002701227 0.09508439836608053 0.05915628705770177 168.26565378479148 -2.2259954772711708 0.6155630207884978 GLCTSPAEHQYFMTEY(ph)VATR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLCTSPAEHQYFMTEYVATR 20 0 Q13164-2;Q13164;Q13164-4;Q13164-3;I3L0J8;C9JUK9 Q13164-2 MAPK7 Mitogen-activated protein kinase 7 1 GLCTSPAEHQYFMTEY(1)VATR;GLCTSPAEHQYFMT(0.008)EY(0.991)VAT(0.001)R 257.83 1.8052e-35 582400000.0 272770.0 369690.0 347660.0 326940.0 358770.0 340440.0 354530.0 277250.0 358510.0 402970.0 True False 271301.4366275961 381994.90816767554 396607.50608510827 368330.5704780866 404457.2329036076 316906.1841095595 337380.02946387936 297939.8028469739 270160.01428787736 377252.1096000258 0.7191515427580727 1.0125719603600845 1.0513062644118907 0.9763512545194297 1.072113906354097 0.8400382026903789 0.8943091923901498 0.7897631193178979 0.7161259206060087 1.0 18.525169442785817 2.6476822983395 9.380558094689158 0.8349731160335537 0.9740736088296871 0.2076853530758601 0.11357325325620103 0.5681364313162911 55.11652839627057 0.036143622673233296 0.03406014476459822 444.306123028855 -2.6476822983395 0.13910049279613335 GLDDDRGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLDDDRGPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 120.12 0.00065364 2110530000.0 1248190.0 1523090.0 1407760.0 1502910.0 1378060.0 1475010.0 1383620.0 1240440.0 1524040.0 1467210.0 False True 1241469.8837269456 1573785.1299226528 1605960.3715307273 1693178.251903168 1553547.7725984505 1373046.0305000632 1316689.0146583135 1333007.9316266906 1148460.763089722 1373571.4016583234 0.9038262461114941 1.1457614274893972 1.169185940819559 1.2326830988611008 1.1310280417332803 0.9996175144898722 0.9585879649712163 0.9704686119828498 0.8361128964269178 1.0 20.389500476564262 2.5858510406576594 2.908835541787543 0.9439994568899814 1.1277565525219273 0.4648530497409935 0.0889399839906352 0.24066241427222862 3.938106720491164 0.03210335994165234 0.029346369792853766 385.3461645139557 -2.5858510406576594 0.18375709563194587 GLDDDRGPWR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLDDDRGPWR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;;; 111.06 0.0016452 4248970000.0 1688140.0 1934070.0 1785650.0 1914450.0 1703570.0 1739500.0 1841950.0 1560410.0 2088850.0 1772470.0 False True 1679051.2418099872 1998444.3507799949 2037053.9988519659 2156819.1737070195 1920509.5416495209 1619252.4593425519 1752847.8415676844 1676855.7178014284 1574080.906655973 1659349.4471120874 1.011873204123573 1.204354124598688 1.227622067429637 1.2997980488442158 1.1573870380298457 0.9758357181247628 1.0563464161321297 1.0105500807679832 0.9486132709390932 1.0 20.662186308859184 2.8217946972540964 4.866717187378824 1.0048556331375997 1.1938751315208331 0.6098495864197084 0.0726386494324143 0.15413314062624775 6.414697211697442 0.02303395337798425 0.02440177164438135 663.4293752553427 -2.8217946972540964 0.1890194983832334 GLDDLDADADDGWAGLHEEVDYSEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GLDDLDADADDGWAGLHEEVDYSEK 25 0 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 0 ;; 318.64 8.6907e-75 377670000.0 669590.0 705450.0 656470.0 666570.0 670830.0 741680.0 714090.0 693550.0 861570.0 783210.0 False True 665985.001838442 728930.47679647 748895.2698604708 750957.6936550384 756256.224179076 690409.4073269233 679546.7386112916 745306.2227755401 649247.6179465182 733224.8672601837 0.9082957106010404 0.9941431467269238 1.0213718918983778 1.0241847040200864 1.0314110417516973 0.9416066450484046 0.9267917237320806 1.0164770127894058 0.8854686289794557 1.0 19.483896190026254 2.7237758669045697 24.86799465954629 0.9579117859224773 0.9987732920778888 0.1613719139372236 0.0470243788367485 1502.818320991945 2527742.9647244397 0.015239463783106186 0.014427954290991422 529.3901627797484 -2.7237758669045697 0.04086150615541151 GLDDS(ph)TGGTPLTPAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDDSTGGTPLTPAAR 16 0 Q9NXR1;Q9NXR1-1;I3L533;I3L2R9;I3L2T8;I3L2R3;I3L522 Q9NXR1 NDE1 Nuclear distribution protein nudE homolog 1 1 GLDDS(0.85)T(0.146)GGT(0.002)PLT(0.002)PAAR 53.773 0.095756 946410000.0 263490.0 756800.0 619560.0 861820.0 717800.0 450770.0 479160.0 360560.0 181050.0 412150.0 True False 262071.39911649105 781989.630504739 706788.6626879417 970926.3236356049 809207.5752660754 419609.33089844335 455981.2002310446 387466.8180865814 136432.6534457063 385846.23414063256 0.6792120174508992 2.0266872171148904 1.8317884176377177 2.516355578273503 2.097228127853483 1.0875040204370763 1.1817692124081982 1.0042000771358006 0.3535933264959107 1.0 18.557666499547445 2.634295039367826 4.569601152897041 0.9338883286328962 1.8774233103939006 0.4677815454692479 0.48298612239141253 0.2104164947991845 7.215796504962855 0.16285746886131597 0.15308661254177391 430.8191895148496 -2.634295039367826 0.9435349817610045 GLDEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDEDR 6 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 127.95 0.039173 240120000.0 395020.0 528970.0 462960.0 484540.0 482000.0 407770.0 474800.0 460320.0 486900.0 465700.0 False True 392893.25621084834 546576.4466808826 528140.743879543 545882.7143189942 543379.8429621732 379581.8196873309 451832.1100878625 494671.4158575979 366910.01912573574 435978.6272941707 0.9011754971780965 1.253677158610088 1.211391363740377 1.2520859513387732 1.2463451392894425 0.8706431827705471 1.0363629815802755 1.1346230867501332 0.8415779952400467 1.0 18.733897886841575 2.752623061143351 24.783875423000456 1.0022624349909084 1.1839544365134123 0.3721637050623202 0.12487710888021683 838.9673765558001 1478608.1290901287 0.038320988805938455 0.04046536428126128 565.7480440396803 -2.752623061143351 0.18169200152250387 GLDFSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLDFSDR 7 0 Q13561;Q13561-3;Q13561-2;F8W1I6;F8VW18;F8VX93;F8VRV7;H0YHL1 Q13561 DCTN2 Dynactin subunit 2 0 ;;; 177.71 0.0016898 2609040000.0 2852290.0 3938180.0 3688000.0 3940860.0 3686140.0 3451910.0 3544830.0 3082150.0 3301410.0 3590910.0 False True 2836933.5875592073 4069259.94061992 4207238.343329347 4439772.471934517 4155548.0795364897 3213287.5866221045 3373353.030334365 3312155.683840573 2487821.7421275317 3361735.0494672763 0.8438897015422936 1.210464203972518 1.2515080104233838 1.320678877604609 1.2361319432936888 0.9558420099559316 1.0034559478055625 0.9852518521248246 0.7400409923803392 1.0 21.680774594349707 2.7289358162069024 22.50930030442446 0.9456713748906639 1.1872594042800713 0.41571524943283344 0.13892550325053776 176.2562624370889 412204.2286718835 0.045429247062683 0.04343769289386413 535.7174787022346 -2.7289358162069024 0.24158802938940738 GLDGPRPNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDGPRPNQK 10 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 62.104 0.07958 503000000.0 255030.0 293320.0 266000.0 247040.0 235120.0 263950.0 267390.0 244580.0 295720.0 281630.0 False True 253656.94681649678 303082.9788843159 303450.4878865524 278315.2386704179 265061.1383345771 245703.7577714671 254455.32417100575 262831.80155207496 222843.7684449838 263656.1322844261 0.9620748989174187 1.1495388946893792 1.1509327898324668 1.0555993378912878 1.0053289337061022 0.9319098920347039 0.9651029997531227 0.9968734626985204 0.8452060891365317 1.0 18.008298026676822 3.1726139562625018 2.422980358969332 0.9537644738249295 1.0939464070888019 0.4837563427210292 0.06391594745670326 0.23808756850082669 2.8576908556844702 0.019488358005784603 0.025219297736044043 1488.0377750288103 -3.1726139562625018 0.1401819332638724 GLDHDFGPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLDHDFGPSR 10 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 0 ;;; 137.98 7.6929e-05 848240000.0 445403.0 601161.0 615718.0 558053.0 465118.0 472808.0 554973.0 412580.0 605022.0 503869.0 False True 443004.999736925 621170.2804755019 702405.7424832047 628702.4525815366 524348.0203296266 440123.89583031466 528126.8357872601 443368.81463878934 455922.4349794435 471711.64903604623 0.9391436498170356 1.3168432065328 1.4890574441368731 1.3328109531878314 1.1115859050781214 0.9330358848031803 1.1195967639690467 0.9399149152767879 0.966527826716028 1.0 18.84754570345573 3.052815740741243 4.03794696437793 0.9960036429449167 1.2870136044031095 0.47264092094499854 0.13742056636619712 0.18804005852383368 6.412988971447018 0.04223669924612221 0.05023439769488847 1129.3166748685878 -3.052815740741243 0.2910099614581928 GLDHLLDENR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLDHLLDENR 10 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 ; 154.35 0.0035769 0.0 169933.0 202278.0 198910.0 173361.0 144926.0 188539.0 180271.0 153643.0 191828.0 169410.0 False True 169018.09960933137 209010.7009503666 226914.79904328618 195308.48482489615 163381.46705629848 175505.74270306737 171550.6030279043 165108.62084334553 144554.5597635072 158598.108760802 1.0657005996474072 1.3178637663680908 1.4307534989936077 1.2314679308027616 1.0301602480185357 1.106606781596403 1.0816686552463073 1.0410503765360954 0.9114519769055045 1.0 17.27501604183633 3.3025976390973915 4.45316915069613 1.0378004076375362 1.2836174126162876 0.5774250949839773 0.09748882135074685 0.1511839013320349 5.908383627031608 0.0281125245607008 0.037905132386792356 2007.2323099391983 -3.3025976390973915 0.24581700497875136 GLDHLLDENRVPDLAQMYQLFSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLDHLLDENRVPDLAQMYQLFSR 23 1 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 ;;; 227.38 5.1256999999999986e-33 758280000.0 311718.0 443751.0 398630.0 473767.0 397718.0 417804.0 421605.0 375746.0 468475.0 420282.0 False True 310039.74492312595 458520.9837818554 454753.6390459263 533745.8536235747 448365.02984072606 388922.1928848265 401210.35546249547 403786.0745195273 353025.61349338444 393459.24293847743 0.787984398606706 1.165358272835266 1.1557833427667958 1.3565467407434446 1.139546313595774 0.9884688182192218 1.0196999121589578 1.026246254895236 0.8972355328518351 1.0 18.585854674195296 2.7397289955603323 22.563589881043153 0.9938953843025533 1.1385192118428609 0.19263449325986548 0.13511195157407388 44.39262372315206 857308.6015758815 0.04312330613128677 0.04343533235814569 549.1980613971454 -2.7397289955603323 0.14462382754030756 GLDIPEVDLVIQSSPPKDVESYIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDIPEVDLVIQSSPPKDVESYIHR 25 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 168.57 6.6614e-12 184680000.0 153470.0 257090.0 251600.0 305200.0 219190.0 319130.0 281460.0 313540.0 440010.0 329020.0 False True 152643.73457212013 265647.08523581293 287023.0930535966 343838.28870713874 247102.5472590849 297069.2942512147 267844.70451838576 336937.9469238595 331575.4313319259 308021.6619118061 0.49556168752776114 0.8624298810252962 0.9318276230058721 1.1162795712906315 0.802224576432018 0.9644428655029875 0.8695645067815914 1.0938774397637423 1.0764678992832128 1.0 18.232672287804444 4.823352643861227 1.780409499354009 0.9845758390454835 0.25763959113051127 0.7126113065304157 0.0931028348442854 0.6092018309460243 1.6387954844901307 0.024505193921843554 0.7976382915947536 66581.35723909494 -4.823352643861227 -0.7269362479149722 down GLDIPEVDLVIQSSPPQDVESYIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDIPEVDLVIQSSPPQDVESYIHR 25 0 Q9BQ39;A0A087WVC1 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 0 147.39 2.3733e-07 92180000.0 154470.0 220430.0 221510.0 213230.0 173340.0 192600.0 201900.0 157960.0 155780.0 198860.0 False True 153638.3506832302 227766.87929725123 252696.68260056467 240224.89613703577 195413.82153332583 179286.01533163313 192133.3256671003 169747.77730462726 117390.10634505468 186168.5845473884 0.8252646441758934 1.2234442231539564 1.3573540520540501 1.2903621560053682 1.0496605644202237 0.9630304477391386 1.0320394610842283 0.9117960353908084 0.6305580859974447 1.0 17.50625011692785 2.3676400276729908 1.1038041152573967 0.847195009207199 1.1797621376069596 0.37126010822500255 0.16510511022117327 0.5298625865657351 1.273660612773426 0.1078972741156079 0.06873299253299615 233.15247374430095 -2.3676400276729908 0.33256712839976055 GLDISHISQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLDISHISQR 10 0 H3BVG0;Q8N1F7;H3BM93;H3BNN5;H3BV11;H3BRI8 H3BVG0 NUP93 Nuclear pore complex protein Nup93 0 ; 131.09 0.00025942 687210000.0 452790.0 866980.0 996650.0 1042860.0 927980.0 897060.0 977770.0 798280.0 936280.0 955850.0 False True 450352.2289496981 895836.9051995223 1136969.6569629032 1174885.969073154 1046152.7524316141 835048.3536521012 930471.5296558733 857851.7071837037 705546.33950923 894846.8346556445 0.50327297533885 1.0011064134168377 1.270574597719209 1.3129464435388816 1.1690858277821312 0.9331746186188892 1.0398109415159724 0.9586575869308659 0.7884548642123083 1.0 19.77128124084414 1.6075636689556365 2.9614114189128804 0.888787064897577 1.0542031191396868 0.05539316631494129 0.21709355656829385 0.5986833104465301 12.265164972202493 0.1509283780624342 0.061133710340999986 40.51013299298723 -1.6075636689556365 0.1654160542421098 GLDIYVWR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLDIYVWR 8 0 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 0 ; 107.59 0.0092432 489580000.0 830380.0 1023070.0 945400.0 924040.0 821530.0 901200.0 961770.0 805900.0 1073090.0 1000090.0 False True 825909.3263438907 1057122.266491125 1078504.1024358908 1041023.3692560442 926146.9759101947 838902.165196613 915245.5107818089 866040.3502772807 808641.3481693076 936263.3999798729 0.8821335175140304 1.1290863943991085 1.1519238095380806 1.1118915566692271 0.9891948952934658 0.8960108503810434 0.9775513074648482 0.924996481007266 0.8636900130739824 1.0 19.83655493628181 3.0485359667488874 4.457911466939667 0.9319555658701453 1.0781549418086163 0.40284431552705546 0.07775970791776243 0.19353745084446058 8.311594379958338 0.02298124957532146 0.027293898195966552 1118.2424296735403 -3.0485359667488874 0.146199375938471 GLDLGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDLGGR 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 114.02 0.033551 0.0 180480.0 287960.0 266220.0 257760.0 223270.0 239810.0 253570.0 204080.0 285020.0 259640.0 False True 179508.315733213 297544.5745245038 303701.4619742785 290392.38957127195 251702.11107503017 223232.499152019 241303.8503685325 219309.48589724212 214780.6400723292 243069.55291101267 0.7385059691080712 1.2241128967453785 1.2494426321072927 1.194688458893838 1.0355147654678818 0.918389392988862 0.9927358135918957 0.902249925055529 0.8836180323701834 1.0 17.891009665971815 2.9573183239732868 4.072140440812801 0.9365882318798097 1.1212328110181153 0.23019586916045764 0.13813332884395976 0.29396413349449824 10.410689926937547 0.042565876693143524 0.047232995514844674 906.3967173018043 -2.9573183239732868 0.18464457913830568 GLDLHGLLAFIQLQQCAQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLDLHGLLAFIQLQQCAQDR 20 0 O95274 O95274 LYPD3 Ly6/PLAUR domain-containing protein 3 0 ; 238.68 1.2235999999999996e-29 268690000.0 198296.0 286760.0 295560.0 291390.0 303800.0 310620.0 284950.0 221730.0 281640.0 277190.0 False True 197228.39636875672 296304.63324991945 337172.27894642646 328279.94412311015 342487.12923632417 289147.5705208299 271165.87988529156 238276.61852212637 212233.59578264947 259499.49688570146 0.7600338294899565 1.1418312436283031 1.2993176595441978 1.2650504068903978 1.3197988179035862 1.1142509869612083 1.0449572470837145 0.9182161097872076 0.8178574460825617 1.0 17.985372215944025 1.9916430385367583 2.116409547277023 0.9001502103748739 1.171109755889952 0.3221449592249632 0.15366196231174342 0.3661231633507321 3.052244106673237 0.0906664026152601 0.047529902505172535 98.0941342396488 -1.9916430385367583 0.27095954551507806 GLDVDSLVIEHIQVNK ddPTM_BT-474_Trastuzumab_2h_R1 5 GLDVDSLVIEHIQVNK 16 0 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2;J3KRB3;A0A087WWH0;J3QS96 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 ;;;; 258.91 1.0042e-26 1993167000.0 1616392.0 1632681.0 1459878.0 1555461.0 1539273.0 1733584.0 1752384.0 1623833.0 2032813.0 1808746.0 False True 1607689.5250700328 1687023.8001084924 1665416.1329129494 1752382.20311499 1735290.292564138 1613745.4184977864 1667614.4911630333 1745011.664116899 1531853.4744486404 1693310.2817346414 0.9494358726878467 0.9962874603113441 0.9835268532161058 1.0348854678422166 1.0247916824709125 0.9530122363898079 0.9848251139505956 1.0305327280770387 0.9046501937491318 1.0 20.691414925844466 2.7446680843499824 24.950502379128288 0.9818127951722753 0.9989712081385983 0.07069019737560456 0.03762051459133063 1916.7531058179768 7830413.030188777 0.0118095925392374 0.01225588515461313 555.4795619539851 -2.7446680843499824 0.017158412966323033 GLDVEDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 GLDVEDVK 8 0 P17844;P17844-2;J3KTA4;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3 P17844;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 ;; 105.57 0.01015 562870000.0 1848490.0 1771420.0 1567930.0 1539880.0 1518110.0 1896830.0 1893350.0 1836590.0 2673930.0 1832860.0 False True 1838537.9352265443 1830380.643853998 1788680.915308128 1734828.650112547 1711432.3099570656 1765706.606757534 1801761.4272006177 1973645.6718150533 2014975.7803263045 1715885.3056096064 1.071480669026047 1.0667266849771841 1.0424245195529893 1.0110399829411736 0.9974048407326626 1.029035332947401 1.0500477050011812 1.1502200440570076 1.1743067987929645 1.0 20.710521691766345 1.8520780507048094 5.565172385801119 1.1223154292261446 1.0355836506249532 0.29878674164755903 0.04785520238793494 0.22192379558193406 9.04928459008606 0.021125417679975788 0.012496588552158938 71.13413432868403 -1.8520780507048094 -0.08673177860119141 GLDWVKEEAPDILCLQETK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLDWVKEEAPDILCLQETK 19 1 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;H7C4A8;G3V5M0;G3V359;G3V5D9 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 206.28 3.3902000000000003e-16 729780000.0 825490.0 932950.0 754590.0 926410.0 873400.0 1060930.0 1100880.0 969340.0 1704910.0 1196890.0 False True 821045.6535605608 964002.6767698157 860829.7129861426 1043693.411013044 984622.3129526195 987590.4062605893 1047626.2286300027 1041677.0730087843 1284757.775123554 1120503.4554909172 0.7327470964387545 0.8603299454774684 0.7682526178457827 0.9314504171303772 0.878732062920087 0.8813809555169146 0.9349602836976657 0.929650924237804 1.1465897484097212 1.0 20.09571566726835 2.776791953471173 0.39740619710642644 1.0478295765978374 0.7512088874267473 0.6441806368585969 0.06566710878864014 0.9846898527877135 0.311295159920826 0.06610993249210713 0.11390599025203292 598.1249977279144 -2.776791953471173 -0.2966206891710901 GLDYLHSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLDYLHSEK 9 0 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;Q9P289-2;Q8NBY1;B4E0Y9;Q9P289-3;Q9P289 B4DR80;Q8NBY1 STK24;STK26 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26 0 75.378 0.03843 243230000.0 424030.0 426260.0 428650.0 419840.0 427130.0 475010.0 442030.0 415550.0 521030.0 504150.0 False True 421747.06959416217 440447.8064203881 489000.19410740834 472991.7009528354 481522.473702144 442173.67675326526 420647.3201814189 446560.4511201436 392629.1379443049 471974.71537546994 0.8935797953893564 0.9332021230628822 1.0360728619082786 1.0021547458883606 1.020229385209923 0.9368588238916632 0.891249692998451 0.9461533352796059 0.8318859573482803 1.0 18.848350048050406 2.4954362347088543 16.154046668636088 0.9154360144096171 0.979212493823785 0.20867937203198506 0.055273826317545446 11.750527151276543 10364.701212004386 0.018205609758476408 0.016702360494180283 312.922098993328 -2.4954362347088543 0.06377647941416786 GLEDHESVVEVQAAWPVGGDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLEDHESVVEVQAAWPVGGDSR 22 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ;;; 242.16 1.0665e-30 2217970000.0 893900.0 1332890.0 1391110.0 1511520.0 1280210.0 1467760.0 1537740.0 1311150.0 1207540.0 1408960.0 False True 889087.3417216263 1377254.4379009795 1586966.1962551204 1702878.2770203638 1443237.1551008371 1366297.205935396 1463353.6414627386 1408994.6708847971 909957.9472070055 1319038.9665286555 0.6740417563716541 1.0441347623910846 1.203123058927952 1.2909992200623663 1.0941580891268412 1.0358277811391055 1.1094089550014428 1.0681979127522518 0.6898643408554959 1.0 20.33105575407078 1.3190219956921971 9.975254340391341 0.8456084059000686 1.0783581457104385 0.21572751813830127 0.16631476303734175 0.45211707216949476 51.79007545650881 0.11139777891509896 0.04070280610317077 20.845964588825208 -1.3190219956921971 0.23274973981036995 GLEDSYEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLEDSYEGR 9 0 Q8NHP8-2;Q8NHP8 Q8NHP8-2 PLBD2 Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form 0 ; 106.36 0.0075612 0.0 1569910.0 977150.0 901830.0 839790.0 916200.0 1253010.0 1299790.0 1178550.0 1886970.0 1054150.0 False True 1561457.7789934 1009673.8470503517 1028799.825153119 946107.3278943916 1032872.6392571428 1166392.3679682729 1236914.192020014 1266499.385555638 1421951.527602565 986873.2444967801 1.5822272897768226 1.0231038815579583 1.042484261165392 0.9586918412980427 1.0466112492327406 1.1819069718148372 1.2533668319792508 1.283345548800893 1.44086541562654 1.0 19.912505269068415 2.384960966670231 3.2098968359111195 1.2701077152202227 1.1103019592517642 0.061021301143219464 0.1910165344313485 0.5270607960724292 10.91453165814052 0.07025539784187505 0.057241506570931626 242.63920070808527 -2.384960966670231 -0.15980575596845847 GLEFPMTDLDMLS(ph)PIHTPQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLEFPMTDLDMLSPIHTPQR 20 0 O60784;O60784-4;O60784-2;V9GYF4;B0QY02;B0QY01 O60784 TOM1 Target of Myb protein 1 1 GLEFPMTDLDMLS(1)PIHTPQR;GLEFPMTDLDMLS(1)PIHTPQR 302.84 3.459199999999999e-55 250260000.0 196963.0 289980.0 252000.0 274900.0 255460.0 233190.0 244320.0 186438.0 222186.0 211385.0 True False 195902.57309264631 299631.80900338845 287479.40957673383 309702.3118138683 287991.3167699516 217070.12417021542 232501.30820696405 200350.95027298154 167431.23743986568 197894.22832419642 0.9899357588727281 1.5141007978894785 1.4526922387335937 1.564989107749542 1.4552790104527726 1.096899722687235 1.174876650905014 1.0124143183436378 0.8460642781636596 1.0 17.594370010574206 2.299745698842938 1.3451148936116328 0.9593164072403014 1.4108178122918464 0.5581479971103583 0.16492459816715935 0.3184871107278492 1.1376483059587534 0.09681802693304845 0.05967331257215303 199.40943310037466 -2.299745698842938 0.451501405051545 GLEFPMTDLDMLSPIHT(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLEFPMTDLDMLSPIHTPQR 20 0 O60784;O60784-4;O60784-2;V9GYF4;B0QY02;B0QY01 O60784 TOM1 Target of Myb protein 1 1 GLEFPMTDLDMLSPIHT(1)PQR;GLEFPMTDLDMLSPIHT(1)PQR 210.66 1.2819e-21 45881000.0 54178.0 56825.0 61576.0 67695.0 64120.0 57740.0 49791.0 44847.0 58859.0 53124.0 True False 53886.31166774167 58716.38577356209 70245.36557181338 76265.18005907522 72285.30193098469 53748.56970533999 47382.419109908886 48193.710868451686 44353.988120192356 49733.58083825535 1.0834995341073854 1.180618503311089 1.4124332973382092 1.533474541218066 1.453450580324641 1.0807299373866177 0.9527248653984324 0.9690376211837297 0.8918317839296828 1.0 15.601932689065544 2.5461291183828387 4.117092610500695 0.9571724993318425 1.3384603975516376 0.6778465122471659 0.12417627172683385 0.14789028709502727 4.850455827344843 0.04739646525088331 0.04336248159691169 351.6649771178846 -2.5461291183828387 0.38128789821979514 GLEGERPAR ddPTM_BT-474_Trastuzumab_2h_R1 6 GLEGERPAR 9 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 ;;;;; 148.94 8.0991e-05 17277580000.0 3000320.0 4056040.0 3861350.0 3806180.0 3737000.0 3696940.0 3840430.0 3461030.0 4120410.0 3966120.0 False True 2984166.6104868893 4191042.8394720405 4404994.516544132 4288041.997743577 4212884.799065643 3441379.239460681 3654653.729032707 3719309.633354237 3104990.1661652722 3712998.826033839 0.8037079326724497 1.128748765037677 1.1863711040408462 1.1548729742863908 1.1346313307526072 0.9268463042140799 0.9842862603155048 1.0016996523877544 0.8362486258801134 1.0 21.824153428369392 2.735967169225068 24.982463114451154 0.9571067222228086 1.0941660661763493 0.261994026276935 0.1093050290240485 319.03283664137297 3073203.8333977587 0.0349587121567687 0.0343570848316137 544.461492364643 -2.735967169225068 0.1370593439535407 GLEGKS(ph)PDTGPDWLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLEGKSPDTGPDWLK 15 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 GLEGKS(1)PDTGPDWLK 87.16 0.0067024 0.0 105390.0 99303.0 86000.0 93090.0 92017.0 129040.0 120140.0 116820.0 183840.0 118020.0 True False 104822.59194992976 102608.24032506895 98108.05247459968 104875.18445526736 103734.81952251116 120119.7685274865 114328.36922063117 125537.70159994031 138535.09532979107 110487.8625579946 0.9487249506244076 0.9286833680143857 0.8879532122644077 0.9492009531836028 0.9388797748536515 1.0871761453837172 1.0347595344295915 1.1362126001310426 1.2538489941107749 1.0 16.753528368133573 2.5512722880735055 1.2346102749898182 1.1330478422010828 0.9207204787076604 0.6331890315669602 0.06513192464185087 0.2695778045637613 0.8358933731350481 0.03293547134434573 0.02566367672045067 355.85435738914066 -2.5512722880735055 -0.2123273634934224 GLEGWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLEGWEK 7 0 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 91.9 0.037373 130370000.0 271010.0 308250.0 298280.0 280370.0 271360.0 310630.0 332840.0 279000.0 384110.0 331790.0 False True 269550.9122720414 318509.91490894015 340275.23130376247 315864.8132530161 305916.0875232686 289156.8792443671 316739.25762772566 299820.3967332935 289451.2373103027 310614.87814029003 0.8677978140837735 1.0254174456031184 1.095489157960026 1.0169017503094455 0.9848726157447641 0.9309176719917732 1.0197169547193086 0.9652480220148334 0.9318653344723921 1.0 18.244767409458674 3.0666034340497172 5.417745670931564 0.9701967378186712 1.0093885398918911 0.054915106164795 0.058450882679465375 0.5368325326423773 29.967300301632118 0.017397617673247875 0.02082766732930449 1165.7446581712975 -3.0666034340497172 0.03919180207321993 GLEHVTVDDLVAEITPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GLEHVTVDDLVAEITPK 17 0 E5RHX8;Q9NPA8-2;Q9NPA8 E5RHX8 ENY2 Transcription and mRNA export factor ENY2 0 ;; 182.35 7.5236e-10 558920000.0 548990.0 587610.0 523410.0 510000.0 517550.0 618260.0 593730.0 562780.0 774710.0 621140.0 False True 546034.2988385224 607168.2436322547 597101.5784387231 574565.9477085215 583456.9247408155 575521.1414274937 565009.0116311428 604777.5013389348 583793.1010821499 581498.3134152918 0.9390126957230882 1.044144462029815 1.0268328637649682 0.9880784422811912 1.0033682149721472 0.989721084567395 0.9716434228548264 1.040033113401341 1.003946335894562 1.0 19.14941548173131 1.7319295314967342 24.999999998860964 1.0177819506932417 0.9977129493683984 0.08212061574389473 0.028845462849348948 1.6348305451829597 6121.742923500898 0.013054507133142317 0.007239479785315781 53.942308877159796 -1.7319295314967342 -0.02006900132484335 GLEPGVFTLAEEDDEAEGAPGS(ph)PEREPPAILFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLEPGVFTLAEEDDEAEGAPGSPEREPPAILFR 33 1 Q9HCE9-2;Q9HCE9 Q9HCE9-2 ANO8 Anoctamin-8 1 GLEPGVFTLAEEDDEAEGAPGS(1)PEREPPAILFR;GLEPGVFTLAEEDDEAEGAPGS(1)PEREPPAILFR 194.29 5.9901e-21 89358000.0 11814.8 19323.7 20654.0 18585.1 22735.1 21883.4 18605.8 15311.7 17925.9 16716.300000000003 True False 11751.190429547685 19966.877673076688 23561.90367221375 20937.97175442676 25630.280223504786 20370.652065982624 17705.766372941747 16454.336805237166 13508.302139753585 15649.451422455546 0.7509011090756696 1.2758835523413956 1.5056057261153928 1.3379364674970438 1.6377749948939202 1.3016847374440603 1.1313985324453977 1.0514321787424883 0.8631805534327162 1.0 13.933824465207394 1.884877758210478 1.9211683699888025 0.9505037451187812 1.324768101066873 0.3131749776313617 0.21926681077681592 0.40087294804908924 2.7633745142670003 0.14461914896367545 0.06724859573321018 76.71455288896935 -1.884877758210478 0.3742643559480918 GLESTTLADKDGEIYCK ddPTM_BT-474_Trastuzumab_2h_R1 3 GLESTTLADKDGEIYCK 17 1 P21291;E9PP21;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 ;; 243.09 1.7698e-20 1848850000.0 3130470.0 2621300.0 2382960.0 2218710.0 2197910.0 3095270.0 2987120.0 2848820.0 4300590.0 3144390.0 False True 3113615.8973479113 2708548.38589069 2718460.05494037 2499598.458510537 2477800.810466784 2881301.2703818455 2842621.593693458 3061413.4144148417 3240767.21945358 2943712.3381522805 1.057717446434415 0.9201131342849896 0.923480198695876 0.8491313591053852 0.8417265431655794 0.978798516770287 0.9656587557321326 1.0399838920186204 1.1009116541216646 1.0 21.489205266331204 1.9711280659913304 1.7545595767558506 1.054676602988322 0.9180677611118404 0.4249692677886533 0.06178779692145601 0.3344245494146749 1.9154590251600938 0.040201157960265965 0.019570743621147038 93.56815499052031 -1.9711280659913304 -0.1366088418764817 GLEWLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLEWLGR 7 0 A0A0B4J1U7 A0A0B4J1U7 IGHV6-1 0 79.454 0.075798 182590000.0 855740.0 481700.0 235460.0 134300.0 117360.0 126260.0 103490.0 82676.0 120370.0 102640.0 False True 851132.7909216512 497733.0933062011 268610.72134499135 151302.36622991072 132305.10035278153 117531.94338407047 98483.79332980802 88845.70294022134 90706.42637536413 96089.427325475 8.857715303460871 5.179894470806605 2.795424312761805 1.574599520896487 1.3768955028177707 1.2231516687675241 1.0249181004713743 0.9246147616145359 0.9439792586974473 1.0 16.552090080223568 4.8776274234817905 0.9111301984674149 1.0004955051139979 14.972591800953714 0.9988009217042518 0.08535969634617023 0.0879797073231634 0.048520333257271626 0.03144130736291437 1.2945488979020685 75444.47200306112 -4.8776274234817905 13.972096295839716 up GLEYLYLNVHDEDRDDQTR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLEYLYLNVHDEDRDDQTR 19 1 Q9Y6G9;C9JGM7;C9JLW1 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 ;;;; 250.22 1.8781e-25 1011125000.0 596939.0 698538.0 647169.0 726938.0 657741.0 722453.0 683273.0 604296.0 759001.0 705968.0 False True 593725.146750158 721788.4150548613 738284.7699062118 818968.2762653682 741500.4176136573 672511.5245814335 650220.4746336637 649391.6360729113 571955.3736423346 660912.5178303871 0.8983415062241692 1.0921088579534168 1.1170688252808687 1.2391477754935543 1.1219342917695376 1.0175499879910326 0.9838223018807046 0.9825682197769593 0.8654025430172259 1.0 19.33409979542115 2.4496846217587955 2.465109074761261 0.9578648777037427 1.102171043437202 0.3575219829003683 0.08538056286016903 0.3288555502410854 4.068660208772824 0.03468898281142664 0.02864075452939664 281.63370061381937 -2.4496846217587955 0.14430616573345934 GLEYLYLSVHDEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLEYLYLSVHDEDR 14 0 O43237;O43237-2;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 ;; 195.1 6.7091e-08 684930000.0 480647.0 709475.0 647835.0 648665.0 658885.0 625849.0 598494.0 609863.0 638495.0 670391.0 False True 478059.2499569018 733089.4464883066 739044.5369172368 730785.9224908797 742790.0992326383 582585.5317200783 569542.5587508946 655374.0738815652 481146.4626446629 627606.0724293883 0.7617186495764635 1.1680725835723749 1.1775611635758771 1.164402249427088 1.1835291783544832 0.9282662442461067 0.907484142953339 1.0442443160957482 0.7666376789220701 1.0 19.259499785667906 2.722712429748177 24.08301169314304 0.9395407670841596 1.1042159695281628 0.2598130983014668 0.13503442307062502 696.6015327280899 1058558.2139293228 0.04310573783452941 0.040782204758609046 528.0954549453196 -2.722712429748177 0.16467520244400324 GLEYLYLSVHDEDRDDHTR ddPTM_BT-474_Trastuzumab_2h_R1 7 GLEYLYLSVHDEDRDDHTR 19 1 O43237 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 ;;;;;; 193.9 2.7654e-15 4623402000.0 980470.0 1594675.0 1559321.0 1805625.0 1692968.0 1660230.0 1751809.0 998544.0 1794407.0 1605937.0 False True 975191.2584604573 1647752.7933736062 1778859.842938899 2034216.9398650958 1908557.4397924975 1545462.2078610435 1667067.3061097444 1073060.4237836925 1352199.4386719111 1503444.7257481604 0.6486379191460944 1.0959849505299462 1.1831893866624752 1.3530373980678316 1.2694563405666548 1.027947473820146 1.1088317897953717 0.713734536033378 0.8994008329764269 1.0 20.519840397425718 1.7584610668336476 24.999999999987317 0.8464391725931106 1.1150336752567136 0.22760605946843293 0.18831995301233084 11.495756067579114 14454.757642890943 0.08966603644305543 0.049725030408097955 57.34044602931585 -1.7584610668336476 0.26859450266360296 GLFDDEDEESDLFTEAPQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLFDDEDEESDLFTEAPQDR 20 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 0 ; 239.61 2.6409e-29 261290000.0 129638.0 174932.0 141298.0 157468.0 145198.0 155647.0 166966.0 141911.0 176696.0 179120.0 False True 128940.04341213568 180754.50587137276 161191.53021576742 177403.43265444203 163688.10464402824 144887.4892436277 158889.21670793995 152501.11942945668 133151.63840509558 167688.40824765252 0.7689263960434828 1.0779189078139702 0.9612562484206415 1.057934978978641 0.9761444237832088 0.8640280551154673 0.9475265366779713 0.9094314927495386 0.794041996083886 1.0 17.35542343798648 2.7653512156584545 19.36623135798681 0.9022196781275692 0.9790921034636277 0.10616368690384148 0.09236129808537534 88.43450339711688 63925.154391609474 0.02667315021480475 0.028264310475734328 582.5741573360015 -2.7653512156584545 0.07687242533605854 GLFDEYGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLFDEYGSK 9 0 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 ; 169.12 0.00013657 1061870000.0 1086700.0 1297310.0 1219580.0 1118170.0 1127490.0 1387140.0 1430850.0 1272410.0 1787610.0 1355620.0 False True 1080849.327943719 1340490.1791095443 1391286.2632206073 1259730.2073514464 1271069.168343197 1291250.2767763308 1361634.3191221938 1367363.6953670606 1347077.468246779 1269103.170995328 0.8516638778043821 1.056249964341535 1.0962751453291648 0.9926144982865887 1.0015491233437916 1.0174509892396164 1.0729106586774153 1.07742516654077 1.06144047153416 1.0 20.2753779263149 2.3245920125782216 5.2878123611422145 1.0616961294602347 1.0080659528213691 0.12640322895170708 0.062492853890914336 0.4203055057643272 19.529639993053934 0.02203583513127543 0.01816761998110769 211.15045061056225 -2.3245920125782216 -0.0536301766388656 GLFEVNPWK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLFEVNPWK 9 0 Q9HDC9;H0Y512;Q9HDC9-2 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein 0 98.392 0.014063 103590000.0 89618.0 108900.0 124090.0 102020.0 102770.0 138370.0 104690.0 100230.0 136990.0 132640.0 False True 89135.50664549592 112524.67066855989 141560.79339038456 114935.7215396538 115857.15033448668 128804.80758794406 99625.74474536278 107709.67155762734 103230.65007195414 124174.80164118287 0.7178228228869094 0.9061795886230819 1.1400122369387025 0.9255961758793346 0.933016592764682 1.0372861956336368 0.8023024271320572 0.867403612762488 0.8313333197040311 1.0 16.922012916629637 2.2269809048989897 24.994687800061907 0.8623413267851433 0.9492975291734139 0.07628999526405122 0.11132041969491069 488.2473156009324 1053868.8417870365 0.0416842587091068 0.031043332029954865 168.64788724953996 -2.2269809048989897 0.08695620238827062 GLFIIDDK ddPTM_BT-474_Trastuzumab_2h_R1 5 GLFIIDDK 8 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;Q13162;H7C3T4 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 ;;;; 176.66 0.00060257 5114975000.0 8004927.0 7695186.0 6631513.0 6546272.0 6469441.0 8416572.0 8411088.0 7905401.0 10929800.0 8228442.0 False True 7961829.362463 7951315.614171824 7565172.388255701 7375029.363995614 7293285.96396897 7834754.188119375 8004211.539963543 8495342.16543289 8236297.241816522 7703295.786836381 1.0335614239386224 1.0321965862662663 0.9820695709469304 0.9573862367583342 0.946774752753484 1.0170652153209063 1.0390632479206336 1.1028191569574652 1.0691913526014345 1.0 22.877044391498828 2.223449032793503 2.847949884203104 1.0683574564735057 0.9903687195881806 0.381182481500113 0.036104675639114306 0.2351567809491112 3.9242745800073324 0.01581812464021505 0.011325053305329787 167.28193089440327 -2.223449032793503 -0.07798873688532504 GLFIIDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLFIIDGK 8 0 P32119 P32119 PRDX2 Peroxiredoxin-2 0 ; 114.6 0.0061059 2142800000.0 3731400.0 3894200.0 3611700.0 3325000.0 3498300.0 4184300.0 4172600.0 3727900.0 5042100.0 4222000.0 False True 3711310.5569975143 4023816.0929063926 4120195.966540833 3745944.6590800737 3943787.7689513895 3895049.189782718 3970755.3971200823 4006094.8278926387 3799542.0156785203 3952548.345363946 0.9389665179808904 1.0180308351259102 1.042415071626771 0.9477289919739492 0.9977835624900497 0.9854526369933791 1.0046064083637312 1.0135473314555403 0.9612891946369508 1.0 21.914351678255766 2.2438102662124257 24.847186479299882 0.9981785950120622 0.9907768788666664 0.002297410083948126 0.031089896655987933 864.0606953308837 4089704.2358632153 0.01094032519214557 0.008899934599497577 175.3114437051736 -2.2438102662124257 -0.007401716145395754 GLFS(ph)DEEDSEDLFSSQSASK ddPTM_BT-474_Trastuzumab_2h_R1 4 GLFSDEEDSEDLFSSQSASK 20 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 GLFS(0.995)DEEDS(0.005)EDLFSSQSASK;GLFS(0.968)DEEDS(0.032)EDLFSSQSASK;GLFS(0.979)DEEDS(0.021)EDLFSSQSASK;GLFS(0.995)DEEDS(0.005)EDLFSSQSASK 244.49 4.3382999999999995e-30 305020000.0 472911.0 452941.0 415598.0 381574.0 401352.0 514707.0 495390.0 452412.0 590245.0 512019.0 True False 470364.899721351 468016.86737638345 474110.58595742634 429881.2292763358 452461.7982003196 479126.5165799517 471426.09312642325 486173.2807415866 444787.02862778737 479341.5090584802 0.9812730398526073 0.9763745858264172 0.9890872728478525 0.8968161971215596 0.9439236737269894 0.9995514837032353 0.9834868965393705 1.0142524099290406 0.9279126055689094 1.0 18.870694351426547 2.7367884693908406 24.992502892667815 0.9881373089360316 0.9569279089610141 0.150970071550384 0.032232372484880804 291.3976422231996 4109569.6793012177 0.010483759409663687 0.010376830269777497 545.4921050488413 -2.7367884693908406 -0.031209399975017482 GLFYFDNSFRPVPLEQTYVGITEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLFYFDNSFRPVPLEQTYVGITEK 24 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 239.32 1.5274999999999995e-37 730270000.0 370190.0 428800.0 371900.0 362250.0 340480.0 414000.0 431940.0 408340.0 546540.0 423360.0 False True 368196.93817197543 443072.3487849263 424260.2873872518 408110.81285767036 383838.1098169313 385381.15445117373 411045.41202896193 438812.40430850623 411852.54026079125 396340.8023432686 0.9289907473444586 1.117907483068533 1.0704431259131435 1.0296966914453785 0.9684546923949839 0.9723479191965636 1.0371009232427142 1.1071592975392255 1.0391373732550706 1.0 18.596381971412562 1.9932486013131212 24.878388771586643 1.0635366395823 1.0191447008289107 0.04953127348547803 0.05649714699601836 668.9568747456506 2465055.3200439448 0.022274974425193404 0.015840301724704967 98.45745402319994 -1.9932486013131212 -0.044391938753389315 GLGACTLLGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 GLGACTLLGSPR 12 0 O95644-6;O95644;K7ER53;O95644-8;O95644-11;O95644-3;O95644-10;O95644-2;O95644-5;O95644-4 O95644-6 NFATC1 Nuclear factor of activated T-cells, cytoplasmic 1 1 GLGACTLLGS(1)PR;GLGACTLLGS(1)PR;GLGACTLLGS(1)PR;GLGACTLLGS(1)PR;GLGACTLLGS(1)PR;GLGACTLLGS(1)PR 182.72 1.7321e-05 1948640000.0 946462.0 1190630.0 1099860.0 1090150.0 893354.0 1039610.0 1029070.0 990410.0 1124780.0 1088870.0 True False 941366.3537538131 1230259.3997989653 1254710.7278455016 1228162.878224402 1007117.3365759954 967744.2076787058 979289.9526708431 1064319.4234000768 847593.0402798209 1019377.384371493 0.9234718840993531 1.206873350989137 1.2308598827892436 1.2048166822747766 0.9879730039301817 0.9493483203724181 0.9606745918486643 1.044087734059642 0.8314811111906437 1.0 19.959256820796618 3.1770835943672564 6.8080268840705855 0.9680196319758066 1.1522853020227644 0.4586702516393646 0.09507045504389568 0.18771243356282372 16.478432598527622 0.027409878256664768 0.03304543360307814 1503.4313234286994 -3.1770835943672564 0.1842656700469577 GLGCQTLGPHNPT(ph)PPPSLDMFAEELAEEELETPTPTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLGCQTLGPHNPTPPPSLDMFAEELAEEELETPTPTQR 38 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 GLGCQT(0.046)LGPHNPT(0.908)PPPS(0.046)LDMFAEELAEEELETPTPTQR 129.18 2.2704e-08 51363000.0 17928.0 20988.0 18800.0 26463.0 21879.0 19849.0 20779.0 19940.0 26757.0 23790.0 True False 17831.477639988057 21686.572892486085 21446.876587470644 29813.213086687483 24665.160963007056 18476.88534952015 19773.840386511554 21428.024053268357 20163.095875430892 22271.70183235629 0.8006338165897371 0.9737276951588795 0.9629653247383484 1.3386140543321614 1.107466378127133 0.8296126397793707 0.8878459551655883 0.9621188454551667 0.9053235368901168 1.0 14.44292418155902 2.745442805973439 24.636337174330748 0.9162093872761529 1.0458627142768553 0.16489720689858955 0.13388859205550888 846.8957693520812 3031652.1008538795 0.04412998293171711 0.04585228773932093 556.4713454322815 -2.745442805973439 0.12965332700070242 GLGGEVPGSHQGPDPYR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLGGEVPGSHQGPDPYR 17 0 K7EM09;K7EPR0;K7ELQ9;Q6UW68 K7EM09 TMEM205 Transmembrane protein 205 0 ;;;; 162.59 2.8231999999999995e-09 4890520000.0 1864860.0 3100960.0 3304900.0 2548860.0 3392350.0 3386860.0 2532270.0 2133490.0 2864710.0 2677620.0 False True 1854819.8009654225 3204173.579030097 3770201.1932942364 2871545.4146594987 3824345.664466243 3152734.340010873 2409774.425889195 2292701.8574427026 2158740.605647331 2506731.999174186 0.7399354225248138 1.27822742123437 1.5040304246869174 1.1455334737042078 1.5256300496926394 1.2577069830558292 0.96132112514743 0.9146178603049735 0.8611772644058093 1.0 21.257376331698612 2.2163251976799554 5.082126928597768 0.9227454354494589 1.2651104408535132 0.34551146686873313 0.206232935818022 0.19673402667367998 13.342840828856119 0.0774485131479387 0.05868592980540233 164.56034821924234 -2.2163251976799554 0.34236500540405435 GLGHPPS(ph)SPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLGHPPSSPLLK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 GLGHPPS(0.603)S(0.397)PLLK 76.58800000000002 0.019782 326920000.0 510780.0 608350.0 532780.0 561810.0 533410.0 568810.0 541100.0 464460.0 610520.0 610280.0 True False 508030.01723299304 628598.5619946592 607790.7929932239 632935.0883963224 601336.6017312295 529489.5035347146 514924.9257972662 499120.36368009134 460065.5265488685 571331.4079130054 0.8892037269380242 1.1002345631423325 1.06381477470913 1.1078247749556545 1.0525180191437906 0.9267642146068364 0.9012718689459339 0.8736091815839583 0.8052515933430374 1.0 19.123968316094786 2.625273735765451 3.0369809694063523 0.8854887523387809 1.051414374934731 0.4889198470202014 0.07219390454201426 0.20134949314359998 3.5623309620011057 0.0243280438728919 0.022723813010233133 421.96238247251364 -2.625273735765451 0.16592562259595023 GLGHPPS(ph)SPLLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLGHPPSSPLLKK 13 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 GLGHPPS(0.532)S(0.468)PLLKK 74.816 0.020263 727380000.0 490890.0 513170.0 438560.0 430830.0 405030.0 609890.0 526740.0 431920.0 742410.0 595350.0 True False 488247.10278300627 530250.5532321837 500305.43596814485 485373.0338260047 456608.16969910555 567729.739826634 501259.57385779306 464152.06364531914 559453.0032843244 557354.2532952211 0.8760085706646433 0.9513707845543594 0.8976435238633436 0.870851941931644 0.8192422808286132 1.0186156048331385 0.8993554295032612 0.8327774676538902 1.003765558397904 1.0 19.088235067742236 2.76149126962486 24.99118969241206 0.9274733052537172 0.8869565452650309 0.18476555320655552 0.0619461984577124 2158.0677403900877 2351986.259584114 0.019858070894447872 0.02104994572666188 577.4192650660036 -2.76149126962486 -0.04051675998868631 GLGHPPSS(ph)PLLK ddPTM_BT-474_Trastuzumab_2h_R1 5 GLGHPPSSPLLK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 GLGHPPS(0.032)S(0.968)PLLK;GLGHPPS(0.119)S(0.881)PLLK;GLGHPPS(0.09)S(0.91)PLLK;GLGHPPS(0.011)S(0.989)PLLK;GLGHPPS(0.102)S(0.898)PLLK 137.62 5.7244e-05 4345350000.0 4108430.0 4283280.0 3974450.0 3812760.0 3568900.0 4484700.0 4117940.0 3690740.0 5320090.0 4482820.0 True False 4086310.66936948 4425846.385502562 4534018.013461312 4295455.025068908 4023378.2604724052 4174683.2448482583 3918739.5101415534 3966161.759997979 4009025.105053673 4196722.589664712 0.9736909176300708 1.0545958878487978 1.0803711507230094 1.023526080958352 0.9586953091397553 0.9947484389674148 0.933761864506425 0.9450616940384537 0.9552752223667864 1.0 22.00083167116075 3.2968194097548555 4.230987025578017 0.9597244253359632 1.0399802008425685 0.5254740942870699 0.03170333011157443 0.15199010873894742 5.497541712604861 0.009106127966879114 0.012251961040853167 1980.7032297949215 -3.2968194097548555 0.08025577550660523 GLGHQVATDALVAMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLGHQVATDALVAMEK 16 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 98.796 0.0026119 367200000.0 230550.0 272100.0 237750.0 241420.0 226480.0 277340.0 253570.0 241810.0 329530.0 273630.0 False True 229308.74441651284 281156.68401207664 271223.1334399544 271983.74724664976 255320.88554786931 258168.13858813647 241303.8503685325 259855.0900862998 248321.7469757725 256166.69913357068 0.895154386546342 1.0975536045982137 1.0587759234799408 1.0617451377036002 0.9966981907150221 1.0078130352670165 0.9419797779519796 1.0143984013738099 0.969375597279693 1.0 17.96672341648078 3.094069592070507 6.436750138353447 0.9876411196876013 1.0353024592251547 0.11504197975169106 0.053356994741006074 0.40080034144667204 23.018337392234464 0.014917247016813902 0.017895962793472546 1241.8512879665104 -3.094069592070507 0.04766133953755347 GLGKPGGQGDAIQLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 GLGKPGGQGDAIQLSPK 17 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 GLGKPGGQGDAIQLS(1)PK;GLGKPGGQGDAIQLS(1)PK;GLGKPGGQGDAIQLS(1)PK;GLGKPGGQGDAIQLS(1)PK 161.8 1.7687999999999997e-09 2825050000.0 2355570.0 1624730.0 1610310.0 1459580.0 1531370.0 2483950.0 2126050.0 2077370.0 3611620.0 2406950.0 True False 2342887.872848433 1678808.1558799758 1837027.650934567 1644362.678345891 1726380.892358888 2312240.383089354 2023204.8392002934 2232393.8980711186 2721584.644228564 2253336.390306432 1.039741728277784 0.7450321945280768 0.815247851513528 0.7297457607393779 0.7661443270456911 1.0261407897357535 0.8978707519675556 0.9907060071787749 1.2078021976374576 1.0 21.10363127233397 2.0560442040609357 1.0854434720185573 1.0812170461224742 0.8180967609927301 0.4518876429324854 0.110245493654381 0.45301617106642056 0.9892383514172105 0.0826501448283011 0.04016730561226833 113.77430835304735 -2.0560442040609357 -0.26312028512974406 GLGMEVFPVDLIYRPWK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLGMEVFPVDLIYRPWK 17 1 A5YKK6-3;A5YKK6-2;A5YKK6;A5YKK6-4 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 ; 199.68 1.1925e-11 366170000.0 307450.0 378070.0 350240.0 363130.0 345360.0 356400.0 360440.0 318060.0 402720.0 333720.0 False True 305794.7233609059 390653.83140185906 399550.7476593463 409102.2207674425 389339.5488909049 331762.9068753583 343004.1401854864 341795.25227595435 303475.05217152677 312421.7038879338 0.9787883477858342 1.25040554654291 1.2788828134765755 1.3094551872560944 1.246198788514903 1.0619073602977411 1.09788832183222 1.0940189110502927 0.9713635397122851 1.0 18.25313515520173 2.7328899175385986 23.81915713839579 1.058745214584351 1.2238853146841457 0.44574807021751917 0.09246277106404201 237.78876022339952 998801.5098218612 0.030008070234883284 0.02903717038950711 540.6172730274984 -2.7328899175385986 0.16514010009979474 GLGPPS(ph)PPAPPR ddPTM_BT-474_Trastuzumab_2h_R1 7 GLGPPSPPAPPR 12 0 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR 169.98 4.4443e-05 7752200000.0 848157.0 1045187.0 982867.0 1006346.0 990544.0 997313.0 1028829.0 872915.0 991512.0 951805.0 True False 843590.6169511015 1079975.4174661152 1121246.130366888 1133749.300417019 1116683.9069857332 928371.0997322791 979060.6107615529 938056.3498725558 747167.1531801109 891059.9900187425 0.9467270738228942 1.2120120189027892 1.2583284435689943 1.2723602373765788 1.2532084477973755 1.041872724767669 1.0987594794161495 1.0527420828903167 0.8385149838950742 1.0 19.76516303793385 1.8733780352234255 1.1573088457878389 0.936054284881825 1.1888473012817777 0.445858955767081 0.10480313208137701 0.43725941073427915 1.0808849882734386 0.08541717719356696 0.03638884235090079 74.7098793778307 -1.8733780352234255 0.2527930163999528 GLGS(ph)SPDLELLLR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 GLGS(0.985)S(0.015)PDLELLLR;GLGS(0.983)S(0.017)PDLELLLR;GLGS(0.925)S(0.075)PDLELLLR;GLGS(0.938)S(0.062)PDLELLLR;GLGS(0.5)S(0.5)PDLELLLR 180.09 1.3842e-05 323508000.0 270073.0 254192.0 267304.0 259919.0 310054.0 313078.0 201188.0 211834.0 307689.0 269111.0 True False 268618.95697593124 262652.62705769105 304938.07975198125 292824.7187499047 349537.5390659623 291435.65476633934 191455.7678272045 227642.1287512565 231863.16877136644 251936.1055824816 1.0662185809170883 1.0425366640102363 1.2103786356741444 1.1622975518847836 1.3874055021126255 1.1567839952615524 0.7599377921023058 0.9035708805013997 0.9203252873790913 1.0 17.94269836749781 2.293676617916165 9.071317155976512 0.8852625343609557 1.176972194776019 0.6288378602955373 0.10331647821603994 0.20247565744347287 31.152532294990472 0.0375372049863715 0.03131402728710629 196.64215179315715 -2.293676617916165 0.2917096604150633 GLGSS(ph)PDLELLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 GLGS(0.175)S(0.825)PDLELLLR;GLGS(0.487)S(0.513)PDLELLLR;GLGS(0.25)S(0.75)PDLELLLR 194.06 1.4072e-06 174147000.0 199359.0 208121.0 221294.0 203101.0 247750.0 253330.0 184007.0 165813.0 255700.0 236238.0 True False 198285.67329486707 215048.18167319876 252450.2716780707 228813.56577558556 279299.49397070246 235817.8933746758 175105.87843499845 178186.80804135348 192686.1612044581 221161.08858647244 0.8965667268242747 0.9723599347772085 1.141476890404093 1.0346013724114993 1.2628780937723514 1.0662720774340584 0.7917571737151822 0.8056878774662193 0.8712480230405412 1.0 17.7547380524078 2.2473302175509677 24.958292490482897 0.8440126776358653 1.069717385725235 0.44172154099587035 0.10603695764816932 152.44461472515354 433857.7951640408 0.03818463191405139 0.03149396004046121 176.73811452618656 -2.2473302175509677 0.2257047080893696 GLGTDEDS(ph)LIEIICSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLGTDEDSLIEIICSR 16 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YMM1;H0YN52;H0YLE2 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 GLGTDEDS(1)LIEIICSR 218.63 6.847e-13 0.0 30986.0 34787.0 33981.0 40769.0 34688.0 43128.0 37083.0 35110.0 38176.0 36450.0 True False 30819.174818868232 35944.86426581442 38765.22943185315 45930.35121986024 39105.3111881159 40146.66287239181 35289.1536191832 37730.086484967505 28768.03633219157 34123.729793584986 0.903159619575408 1.0533685644343544 1.1360197043624678 1.345994458920338 1.1459858410749524 1.1765027772532384 1.0341528851813058 1.1056847159790981 0.8430507598732584 1.0 15.058487724348184 1.3086894721966218 7.137478475212099 0.9227410221623776 1.118701720749472 0.31480921330453904 0.11244538560797797 0.24166126108443625 19.861493050127052 0.08047283563666421 0.028955115137616002 20.355860792134944 -1.3086894721966218 0.19596069858709442 GLGTDEDSLIEIICSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLGTDEDSLIEIICSR 16 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YMM1;H0YN52;H0YLE2 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ;;; 321.03 9.515599999999998e-58 440482000.0 356696.0 550080.0 487925.0 474883.0 429977.0 584840.0 448302.0 506439.0 654720.0 455563.0 False True 354775.58836865134 568389.0802696181 556620.598879873 535003.1391091489 484732.02227665245 544411.3873652767 426615.9195800518 544232.0498251336 493373.02879852505 426488.5793128934 0.83185249401103 1.3327181730993536 1.3051242773643144 1.2544371996339996 1.1365650706464259 1.276496989069124 1.000298578375448 1.2760764911968667 1.1568258863892387 1.0 18.702147583414707 GLGTDEDTIIDIITHR ddPTM_BT-474_Trastuzumab_2h_R1 7 GLGTDEDTIIDIITHR 16 0 E5RK69;P08133;P08133-2 E5RK69;P08133 ANXA6 Annexin;Annexin A6 0 ;;;;;; 270.75 3.9067e-35 1005468000.0 717428.0 932934.0 968963.0 730736.0 997548.0 1625254.0 751242.0 983156.0 1715626.0 997987.0 False True 713565.4473617439 963986.1442194887 1105384.5680226216 823247.1026759504 1124579.8248697717 1512904.0164163955 714901.5544368695 1056524.0930850096 1292832.9605105945 934294.6152403423 0.763747789746367 1.0317796212188468 1.18312205806545 0.8811429384768256 1.2036672442776302 1.619300798418076 0.7651778601474277 1.1308254118677805 1.3837529826477917 1.0 19.8335180275027 5.286428952684271 1.0692935836487982 1.148810665420705 2.4853045880278774e-11 0.20438762868379434 0.22852201107839087 8.293424175164443 3.4226441585343723 0.0666296169833702 14.327251880084374 193387.74649101435 -5.286428952684271 -1.148810665395852 GLGTDEESILTLLTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLGTDEESILTLLTSR 16 0 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 ;;; 265.53 9.7944e-27 239896000.0 237385.0 261182.0 243935.0 226594.0 222617.0 244991.0 248203.0 233331.0 331871.0 259090.0 False True 236106.9455359532 269875.28498214716 278278.92767897097 255280.7771667938 250965.955395664 228055.34881678136 236196.47266246314 250743.3440508103 250085.83889356517 242554.65438189104 0.9734175010478824 1.1126370082234789 1.147283396346762 1.0524670318833216 1.0346779616957165 0.9402225217979895 0.9737866018871886 1.0337601836162935 1.0310494330890745 1.0 17.887950338114035 3.1981400966470725 2.925229781393562 0.9986971355698042 1.0821757440342468 0.33787818208531395 0.04912511912688153 0.2851672970939437 4.990091103566852 0.015249963319558007 0.019702689429934802 1578.1202646573931 -3.1981400966470725 0.08347860846444255 GLHQSIEEFR ddPTM_BT-474_Trastuzumab_2h_R1 6 GLHQSIEEFR 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;; 205.13 1.7425999999999995e-07 4024960000.0 1233138.0 2318310.0 2584530.0 2858480.0 2705490.0 2545580.0 2711310.0 2231970.0 2119680.0 2545230.0 False True 1226498.9220225126 2395473.546902012 2948409.3588625216 3220363.2749134395 3050018.114804424 2369610.0462507685 2580153.5770899756 2398530.935114012 1597313.2662568048 2382791.2423189664 0.5147320085115247 1.0053224572752346 1.237376278080109 1.3515087758083817 1.2800190216563423 0.9944681700041126 1.0828282105732994 1.0066055693488816 0.6703538429586793 1.0 21.184221131064785 1.4428123289032138 5.186163380749711 0.8314191895372132 1.0839321727000615 0.1321983463743749 0.22958344056595015 0.3524611090680414 18.514803898179753 0.15648062968640414 0.06035443691496849 27.72121932424891 -1.4428123289032138 0.2525129831628483 GLIAEAAQLGPVGGVFNLAVVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLIAEAAQLGPVGGVFNLAVVLR 23 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 156.5 9.3826e-14 0.0 175930.0 118990.0 143940.0 115990.0 120480.0 143190.0 174070.0 147800.0 195500.0 122230.0 False True 174982.81242766045 122950.510219026 164205.50085109175 130674.32210727729 135822.41385909257 133291.61233300375 165649.56908802455 158829.58651319286 147321.64456578626 114429.17675363219 1.5291800342529878 1.0744681881592173 1.4349967858689465 1.1419668113895562 1.1869561392678754 1.1648393889958912 1.447616541405962 1.3880165095931385 1.2874482605338677 1.0 16.804095426823523 4.771647126644349 23.27108367894897 1.2632103368558092 1.5291813264041165 0.24761824436618618 0.14655208040661893 9103.573990986324 6402622.015874788 0.03438055433995163 4.977291163817935 59108.11731859837 -4.771647126644349 0.26597098954830733 GLIDVKPLGVIWGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLIDVKPLGVIWGK 14 1 Q8WVY7 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 0 ; 146.47 7.5663e-06 207243000.0 540000.0 628200.0 600030.0 521080.0 507460.0 656750.0 671820.0 589400.0 783390.0 656080.0 False True 537092.6999996398 649109.2572450804 684509.0084457451 587048.6745724641 572082.0230489313 611350.4183232085 639321.4999983727 633384.0209125569 590334.0313881908 614208.4127016533 0.8744469937120971 1.0568224788552023 1.114457233555086 0.9557809082918214 0.931413525471875 0.9953468654623702 1.0408869152186586 1.0312200351124432 0.9611298366812515 1.0 19.228368747219236 2.4421387996215604 24.337569482170203 1.0146523746845344 0.9926291936471756 0.01649947765569304 0.06486688551678332 710.200750838889 494087.3247494234 0.02344058397095673 0.019611889065218775 276.78260955868507 -2.4421387996215604 -0.022023181037358786 GLIHPDDSVK ddPTM_BT-474_Trastuzumab_2h_R1 6 GLIHPDDSVK 10 0 Q16401-2;Q16401 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ;;;;; 144.77 3.1614e-05 2193440000.0 5371360.0 6851950.0 6383950.0 6088940.0 5525370.0 5984400.0 6331570.0 5348620.0 7574550.0 6340880.0 False True 5342441.1945742 7080013.013658757 7282754.669711861 6859799.179686915 6228993.118066187 5570712.513762332 6025287.770153754 5747761.184142032 5707903.646269955 5936199.609699508 0.8999766762972169 1.1926844579300038 1.2268379011063133 1.1555876875296247 1.0493233933522494 0.9384307941161572 1.0150076086236521 0.9682560496703015 0.9615417306627413 1.0 22.501108173931446 3.020272900227698 4.083368932581943 0.9779440445070445 1.130805436832659 0.383922860551959 0.08421307364334742 0.20881712540766148 7.980119133219768 0.025472915414301626 0.029690856698119075 1047.7867452714106 -3.020272900227698 0.15286139232561446 GLIVYQLENQPSEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLIVYQLENQPSEFR 15 0 P78406;E9PQ57;E9PPG9 P78406 RAE1 mRNA export factor 0 193.85 1.7687999999999995e-07 89375000.0 82389.0 71031.0 76901.0 73195.0 69042.0 75817.0 85252.0 74137.0 88183.0 77302.0 False True 81945.42677827844 73395.22389585382 87727.99236452545 82461.47949514767 77834.08945600493 70575.94924402089 81128.03506573374 79669.4794000581 66451.481241661 72368.52017842817 1.1323352553878114 1.0141871592080958 1.2122396885859728 1.1394661558898096 1.075524126569137 0.9752299628348402 1.1210404035581847 1.1008858437844116 0.9182373921398638 1.0 16.143074650631156 3.037947068963841 5.761492612745917 1.0415941371820483 1.1218871572153004 0.291688609388155 0.071685158667056 0.29570428831956386 25.608851261465297 0.021498751061675713 0.025501777433592922 1091.3073217549324 -3.037947068963841 0.08029302003325212 GLKPSCTIIPLMK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLKPSCTIIPLMK 13 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 117.93 0.00042629 429160000.0 785190.0 831530.0 767340.0 669770.0 748730.0 974680.0 871240.0 769400.0 1149200.0 917680.0 False True 780962.62428281 859206.9733795011 875374.8021611554 754562.8133269355 844076.3274296022 907302.6657499268 829094.7927399935 826816.5349340366 865995.0584910559 859112.8767346239 0.9090337782517557 1.0001095276853897 1.0189287413411157 0.878304625342051 0.9824975859258754 1.056092499973305 0.9650592083909565 0.9624073358982331 1.0080108003765351 1.0 19.712488170418467 3.0153946069514728 24.995361531116835 0.9933453543962389 0.9561856645139829 0.18829896998983808 0.04484259919177504 510.4190999682337 828732.5608405793 0.013295595953940219 0.015886048404205655 1036.0831409287014 -3.0153946069514728 -0.03715968988225604 GLKYELISETGGSHDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLKYELISETGGSHDKR 17 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6;Q96SI9;Q96SI9-2 Q12906;Q12906-7;Q96SI9 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein 0 ; 127.83 2.3391e-05 2530520000.0 2419140.0 2706300.0 2496700.0 2869600.0 2742900.0 3163200.0 3214500.0 2885300.0 4698100.0 3306100.0 False True 2406115.61903172 2796377.559507102 2848213.658294571 3232891.065773281 3092192.0565579794 2944535.429371865 3059002.354417504 3100615.737256527 3540316.206314681 3095101.867505388 0.7773946454857779 0.9034848218940678 0.9202326062987369 1.044518469558144 0.9990598658551573 0.9513533174095891 0.9883365670555523 1.0017814824801172 1.1438448095952751 1.0 21.561555462229418 5.840685145820034 0.6088639581281592 1.020739183365596 2.717514741079193e-12 0.6973963346784059 0.050152586979489586 6.805625517865869 0.6895948363597179 0.021833513863746743 6.580574645008907 692923.2693734056 -5.840685145820034 -1.0207391833628785 GLLALGDYMNVQCHACIGGTNVGEDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLLALGDYMNVQCHACIGGTNVGEDIR 27 0 P38919 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 131.38 4.2487e-05 73035000.0 9656.0 9842.7 10290.0 11319.0 11022.0 16379.0 13356.0 12278.0 13858.0 8414.5 False True 9604.013168882459 10170.308319462209 11738.742557716638 12751.98423943678 12425.586367487713 15246.758282018767 12709.91925512529 13194.246706420716 10442.88158768626 7877.479405984115 1.2191733769036304 1.291061238666819 1.490164804340754 1.6187899177178116 1.577355614290611 1.9354869110081825 1.6134500136516028 1.674932554745586 1.3256628230285619 1.0 12.943518362286568 4.198428608338398 2.3342792915652413 1.5905836845462142 1.2247495683599423 0.15790204431981725 0.23391801632319348 0.40992219058000307 4.3652649782726725 0.05779792467412917 0.19402576909956504 15791.689941123002 -4.198428608338398 -0.36583411618627193 GLLAQGLRPES(ph)PPPAGPLLNGAPAGES(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 2 GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK 185.13 1.3125e-18 1856350000.0 1320020.0 1190330.0 1060100.0 1001460.0 989100.0 1477670.0 1483270.0 1205050.0 1680780.0 1454520.0 True False 1312913.1589880087 1229949.4144803202 1209352.8654456167 1128244.7333179917 1115056.022144992 1375522.150961028 1411518.5634583454 1294976.9501199112 1266574.2902981187 1361691.2883227787 0.9641782761239144 0.9032512912638756 0.8881255801637681 0.8285613214928271 0.8188757846269457 1.0101571206020457 1.0365921964566138 0.9510062678854024 0.9301478985432761 1.0 20.37696823354927 2.7266531743936735 24.992852574468724 0.9842285816252654 0.8793841630079414 0.5584577849667149 0.04666019850295947 621.6039107625184 1304699.4358134435 0.0163275202633405 0.01550048910761054 532.9091466787227 -2.7266531743936735 -0.10484441861732396 GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK ddPTM_BT-474_Trastuzumab_2h_R1 8 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 1 GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK 240.13 4.2399e-46 35034320000.0 7236440.0 7068580.0 6801600.0 6459580.0 6215000.0 7965470.0 8148570.0 6794480.0 8493010.0 7666670.0 True False 7197479.811084067 7303853.41225315 7759206.159433 7277362.165684346 7006443.4108089395 7414835.807599496 7754392.5385396965 7301518.599270352 6400021.486003413 7177376.556833584 1.002800919540907 1.017621599538225 1.0810643830642348 1.01393066227737 0.9761844533763665 1.03308440749703 1.0803937172777616 1.0172962978121265 0.8916937038659271 1.0 22.77502518216513 1.3792823342192877 8.218399640984671 0.9468253853824141 1.0300293938419245 0.4185735165466291 0.03883355683328168 0.22403720934835727 16.420352954619677 0.025477616311897325 0.00932927124374907 23.948721533941082 -1.3792823342192877 0.08320400845951037 GLLASDLNTDGDMRVT(ph)PEPGAGPTQGLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLLASDLNTDGDMRVTPEPGAGPTQGLLR 29 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9;C9JMI3;C9JGN4;V9GYX5;C9JVY3;V9GY85;H7C3H1 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR 182.19 1.5824e-17 1842200000.0 543916.0 691623.0 657197.0 759688.0 709226.0 671619.0 663171.0 663166.0 745913.0 672489.0 True False 540987.6166907486 714643.2534600681 749724.6251412733 855864.422907435 799541.7271881553 625191.559351069 631090.8851707618 712654.8144087153 562092.7358721187 629570.1762732009 0.8592967663957257 1.1351288234307177 1.1908515577712684 1.3594424500439393 1.2699803092978716 0.99304506933913 1.0024154716263132 1.131970416113644 0.8928198270119446 1.0 19.2640076741738 2.7218342191299016 24.690401251317855 1.0219056358758059 1.1738623672390787 0.2583581995430224 0.13224565500217422 1099.9238738387546 1623632.3674185504 0.04513500075385784 0.04266611213510385 527.0286432432549 -2.7218342191299016 0.1519567313632728 GLLDAAHFCYLMAQAGFGVYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLLDAAHFCYLMAQAGFGVYTK 22 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 0 169.06 8.724e-12 12962000.0 21269.0 24486.0 25270.0 23400.0 20227.0 21824.0 26268.0 25555.0 32845.0 25663.0 False True 21154.490067208048 25301.00170790043 28827.796349222495 26362.43760074396 22802.78855517818 20315.358248170083 24997.316486495278 27462.04386566064 24750.789850451383 24025.165368800317 0.8805138171777082 1.0531041647170905 1.1999000176148213 1.0972843348241375 0.9491209823175849 0.8455866145484316 1.0404638678973432 1.143053271188865 1.0302026841652203 1.0 14.55225874086802 -0.8165849923200723 3.761383155394587 0.9999993501313023 1.0355837303692812 0.0 0.10504172258144631 15063318.44906728 29209456.388896324 263.4976329159867 0.02711000165588743 0.15255098201946973 0.8165849923200723 0.03558438023797894 GLLDDLRNDLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLLDDLRNDLDR 12 1 Q07065 Q07065 CKAP4 Cytoskeleton-associated protein 4 0 ;;;; 106.01 0.0017953 232378000.0 183174.0 384317.0 411492.0 356257.0 412339.0 412120.0 357677.0 256338.0 430377.0 356304.0 False True 182187.81153654476 397108.75902046746 469426.49684741884 401359.0996721468 464847.9275252689 383631.11442612985 340374.7970511712 275467.2432179894 324316.35510633956 333564.37367279833 0.5461848624015746 1.190501115715677 1.4073040585200236 1.2032433057909535 1.3935778644671746 1.1500961874377005 1.020417118601081 0.8258293299877466 0.9722751609692875 1.0 18.347605684471613 2.108261711862337 3.467400158534022 0.9151038042445095 1.1762071712985265 0.1476184579297085 0.2276632764617077 0.3868771675034201 9.058652480891435 0.0970830437701701 0.0664614809879511 128.31035656851915 -2.108261711862337 0.26110336705401693 GLLDKFPLFTAVYQICYESR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLLDKFPLFTAVYQICYESR 20 1 Q8N335 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein 0 ; 120.11 3.744e-05 118834000.0 108330.0 125518.0 120873.0 120229.0 102589.0 121956.0 153292.0 129109.0 159702.0 121590.0 False True 107746.76331659457 129695.79075276683 137890.86775305 135449.97907264304 115653.10105735777 113525.46877354439 145876.68032769285 138743.7691822181 120345.581997162 113830.02210156372 0.9465583975768588 1.139381231403496 1.2113752172517214 1.1899319403785156 1.0160158007714997 0.9973244903023246 1.2815308091351842 1.2188679807021852 1.057239380044966 1.0 16.796521585901882 2.2464000546377254 24.999943778394766 1.1686321377790367 1.093566633358666 0.02865040288880094 0.10875069931040192 447.00796000402363 1425506.86895417 0.03930185111915516 0.032308912863580966 176.35998557729732 -2.2464000546377254 -0.07506550442037074 GLLEFEHQR ddPTM_BT-474_Trastuzumab_2h_R1 7 GLLEFEHQR 9 0 Q14697;F5H6X6;Q14697-2;E9PKU7;E9PNH1 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;;;; 241.96 2.0058e-10 7597160000.0 4056560.0 6089950.0 6210040.0 5469230.0 4168000.0 4415910.0 5635860.0 4351220.0 6816630.0 4636220.0 False True 4034719.9316861825 6292650.304297477 7084359.653364686 6161633.957227212 4698770.094328508 4110648.5356340143 5363231.920724052 4675930.131447459 5136762.874662274 4340332.470332357 0.9295877583721662 1.4498083608363814 1.6322158963140923 1.4196225748474496 1.0825829879268911 0.9470814882803771 1.235673063615186 1.077320726789716 1.1834952529037321 1.0 22.04937412695441 3.235670809076225 24.97825070931936 1.0941978518205258 1.3839805983933726 0.34100151483836816 0.1823794814327722 81.28787818595936 702619.4750246303 0.05256473027272882 0.06550391945768573 1720.5639101528361 -3.235670809076225 0.28978274657284686 GLLEPLGLECTFIDDISAYHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLLEPLGLECTFIDDISAYHK 21 0 Q9Y2J8 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 ; 224.89 3.0063e-25 343970000.0 524630.0 660820.0 571800.0 580610.0 506760.0 656610.0 703380.0 555040.0 747140.0 640450.0 False True 521805.45037187304 682814.9942258747 652304.4698253034 654115.1664687161 571292.8821981562 611220.0961936835 669354.8222274643 596459.9032360113 563017.3581630769 599575.9326831689 0.87029085379851 1.1388298912703212 1.0879430515267157 1.090963013711171 0.9528282425239404 1.019420665299899 1.1163804044502372 0.9948029444190446 0.9390259472949685 1.0 19.19358294829045 1.5207074116688646 7.46926591084386 0.9687168607246824 1.0438277302406327 0.12211796528548113 0.07701715064824372 0.22316038560575419 24.66732355304075 0.04099715862848434 0.018893254247123965 33.16709323976851 -1.5207074116688646 0.07511086951595025 GLLGLEPVPS(ph)SPCR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLLGLEPVPSSPCR 14 0 E7EX78;O14901-2;O14901 E7EX78 KLF11 Krueppel-like factor 11 1 GLLGLEPVPS(0.541)S(0.459)PCR;GLLGLEPVPS(0.5)S(0.5)PCR 106.13 0.0010066 77338000.0 317990.0 369840.0 327460.0 347990.0 307760.0 342960.0 357190.0 309950.0 436070.0 363900.0 True False 316277.9771720102 382149.90082699934 373563.52166665636 392045.49831978173 346951.4117635657 319251.98244100093 339911.3551016919 333080.0428942093 328606.39153863123 340675.59044953564 0.9283846158589415 1.1217413619882088 1.0965373867077584 1.1507883432518935 1.0184216935112633 0.9371143439415035 0.9977567064701193 0.9777044561798406 0.9645727511766293 1.0 18.378039055862914 3.0067756746633614 24.47273839903864 0.976393846075261 1.0799902683037663 0.3979292728883248 0.05719402049136509 123.2039661814184 444988.5788759889 0.01609763190788222 0.01919561572783269 1015.7239073318042 -3.0067756746633614 0.10359642222850529 GLLGLPEEETELDNLTEFNTAHNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLLGLPEEETELDNLTEFNTAHNK 24 0 Q12972;A0A0A0MT09;Q12972-2 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 ; 209.01 5.7535e-25 105619000.0 98963.0 94308.0 88899.0 83286.0 93830.0 113666.0 86664.0 103137.0 133177.0 117625.0 False True 98430.19420382283 97446.9847696101 101415.20647604 93829.99906049394 105778.69432601806 105808.53696098339 82471.7312313699 110833.60665907412 100357.31283037199 110118.07179617112 0.8938604953600842 0.8849318116465458 0.9209678740448692 0.8520853800834213 0.9605934121495946 0.960864417938913 0.7489391149531325 1.0064978876875674 0.9113609709415696 1.0 16.748691727637148 1.6181889538718632 24.999999999999996 0.9691989254834062 0.8929115046068857 0.27648610789038663 0.061750980987109176 1.0100629117950892 2439.92364649794 0.0276657598566308 0.015127984893016552 41.51346211025042 -1.6181889538718632 -0.07628742087652052 GLLGLPEEETELDNLTEFNTAHNKR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLLGLPEEETELDNLTEFNTAHNKR 25 1 Q12972;A0A0A0MT09;Q12972-2 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 ;; 228.15 3.0468e-34 242523000.0 451196.0 584631.0 516198.0 544179.0 523987.0 611335.0 589882.0 536677.0 703170.0 622857.0 False True 448766.8108685878 604090.0894180973 588874.1915265518 613072.0056040707 590713.6385357266 569074.850377797 561347.1540919293 576726.5629305873 529883.175495263 583105.7330052946 0.7696148150622162 1.0359872236286385 1.0098926458697755 1.051390804278894 1.0130472144240827 0.9759376699056221 0.9626850197455223 0.9890600113947957 0.9087257173142073 1.0 19.1533979816219 4.745079279616795 24.992043666664614 0.9943272012855184 0.7696147132345903 0.7601054326980043 0.03783051477063069 368.38292423188864 1412313.951942371 0.00936662016941514 0.0894108387646951 55600.574577921594 -4.745079279616795 -0.22471248805092814 GLLPGGTQVLDGTSGFS(ph)PAPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GLLPGGTQVLDGTSGFSPAPK 21 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK 278.46 7.3329e-45 839500000.0 831180.0 746380.0 664670.0 714500.0 715790.0 910920.0 875180.0 860850.0 1165900.0 886520.0 True False 826705.0192327804 771222.8071037616 758249.7585847926 804955.6267406644 806941.613680279 847950.2444750321 832844.1998877316 925090.9983077267 878579.5672595921 829941.5346120421 0.9961003091853035 0.9292495614938362 0.9136182814844157 0.9698943758935291 0.9722872998005643 1.021698769265004 1.0034974334391473 1.1146459837561478 1.0586041674252222 1.0 19.66265018355162 2.5510846846546493 1.273953044877803 1.064555065772104 0.9472854316123911 0.5758476072905261 0.036364286983627356 0.27363943778067407 0.9027040566381447 0.018591090291879078 0.014574795816837856 355.7006711698257 -2.5510846846546493 -0.11726963415971281 GLLQDDAHPTLVTYADHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLLQDDAHPTLVTYADHSK 19 0 Q86U44;F5H6D8;B4DTN4;H0YFV6 Q86U44 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 0 ; 166.66 1.1262e-11 559570000.0 409960.0 477060.0 416620.0 480290.0 428370.0 549070.0 516880.0 445140.0 638490.0 502690.0 False True 407752.82091083773 492938.65371114056 475276.47467404354 541094.6647547574 482920.38035208755 511114.0832717534 491876.539726651 478358.6071751195 481142.69482766703 470607.893825439 0.8664385495031329 1.0474508825259625 1.0099203198880813 1.1497781313363686 1.0261629409285167 1.0860720569666842 1.045193984589432 1.0164695778616826 1.0223855169886624 1.0 18.84416599450455 4.7386982754385905 22.741042366334227 1.0467999679857645 0.8664383884584594 0.6185243697313002 0.04200241963552635 2.002441131384299 329467.1614170278 0.009733758724894659 0.056492149570402606 54789.618371941 -4.7386982754385905 -0.18036157952730503 GLLS(ph)GMFLFATR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLLSGMFLFATR 12 0 Q8TF72-2 Q8TF72-2 SHROOM3 Protein Shroom3 1 GLLS(0.98)GMFLFAT(0.02)R 61.344 0.077637 0.0 69533.0 73581.0 60683.0 61606.0 63172.0 71051.0 67374.0 65212.0 81747.0 66263.0 True False 69158.6420538425 76030.09910434624 69226.63893390856 69405.31328339448 71216.57975022079 66139.41160606356 64114.862226326084 70078.4505798263 61601.54720367933 62034.03860939149 1.1148499050547451 1.225619044136131 1.115946027144977 1.118826290198798 1.1480242355112298 1.0661793603753946 1.033543255663828 1.129677386008799 0.993028159774742 1.0 15.920772431463405 2.378325730501639 0.31548564942342916 0.9924023686615853 1.191736908087299 0.5698709517941836 0.04472480320428787 1.3844762021201429 0.3364573545146306 0.06075788177613021 0.09865252138588508 238.9602866158198 -2.378325730501639 0.19933453942571377 GLLS(ph)PPMGQSGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLLSPPMGQSGLR 13 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR 176.43 1.7385e-05 2855740000.0 820040.0 1007660.0 903550.0 933660.0 872820.0 850690.0 915840.0 809540.0 887960.0 828390.0 True False 815624.9957550092 1041199.3539566674 1030761.9862026118 1051861.260269684 983968.4533905487 791883.8026088626 871537.3203514472 869951.9855608256 669134.1560544012 775521.4409796406 1.0517117292395033 1.342579713387965 1.329121197346331 1.3563277617972371 1.2687830424747475 1.0210985290213939 1.1238081557751893 1.121763937902091 0.8628183834726082 1.0 19.56480714269675 2.746549737088438 19.21810994770617 1.0488104752438843 1.281867031697177 0.561777687679679 0.10644077055022336 20.422038494864005 49124.69652031289 0.03290242042715499 0.03410217774775466 557.8914903799749 -2.746549737088438 0.2330565564532927 GLLSGQT(ph)SPTNAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLLSGQTSPTNAK 13 0 G3V1P3;Q969J3 G3V1P3 LOH12CR1 Loss of heterozygosity 12 chromosomal region 1 protein 1 GLLSGQT(0.89)S(0.105)PT(0.004)NAK;GLLSGQT(0.65)S(0.346)PT(0.003)NAK 176.83 0.00017846 234370000.0 747420.0 719610.0 706210.0 756410.0 719500.0 779280.0 739400.0 737800.0 921890.0 743340.0 True False 743395.9737661681 743561.7838365686 805638.2295126398 852171.4284435359 811124.0601893855 725410.207827804 703632.397217703 792858.3824724882 694702.562193109 695899.4047946075 1.068252061496703 1.0684903287940424 1.1576935171404856 1.2245612261948284 1.1655765971358838 1.0424067082539128 1.0111122273849018 1.1393290136618206 0.9982801499853965 1.0 19.408519247906074 2.7317158346106596 24.68222029359742 1.0521319502752764 1.1391370150733422 0.41185816067429837 0.057753447096038656 558.820692347573 2015097.8803649356 0.020074454123342786 0.019341675572089243 539.1577280924994 -2.7317158346106596 0.0870050647980658 GLLYDS(ph)DEEDEERPAR ddPTM_BT-474_Trastuzumab_2h_R1 13 GLLYDSDEEDEERPAR 16 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLY(0.003)DS(0.997)DEEDEERPAR 355.97 1.1943999999999994e-87 110022651000.0 6405032.0 6879994.3 6675078.0 6515326.0 6104219.8 7349210.0 7814008.0 6367480.3 7585390.0 7244797.0 True False 6370548.01937796 7108990.751231128 7614870.961581939 7340165.603568581 6881556.008984619 6841176.410879495 7436014.580630648 6842654.013395815 5716072.273518506 6782427.852877239 0.9392725079523623 1.0481483777546348 1.1227352692519335 1.082232758355806 1.014615438344151 1.0086618773213096 1.0963647151036255 1.0088797347830287 0.8427767161715751 1.0 22.693370365447265 1.4302028246851515 6.978325427156237 0.9211366904917656 1.0466203874713456 0.3966694295129577 0.05992802859495821 0.1825696917453181 17.822301478154436 0.03726203262532784 0.014579658873825826 26.927921010316542 -1.4302028246851515 0.12548369697957995 GLLYDS(ph)DEEDEERPARK ddPTM_BT-474_Trastuzumab_2h_R1 6 GLLYDSDEEDEERPARK 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK 266.78 5.6675e-28 5290330000.0 1505250.0 1620660.0 1340490.0 1401940.0 1616380.0 1936990.0 1940080.0 1709150.0 2719690.0 1961350.0 True False 1497145.9012489985 1674602.6883903416 1529219.34025205 1579425.4602558543 1822216.4119651427 1803090.4404840046 1846230.918574683 1836695.4518878441 2049458.841478891 1836174.963803785 0.8153612432159186 0.912006056830917 0.8328287719837703 0.8601715475871355 0.9923980273591543 0.9819818241877979 1.005476577651438 1.0002834632288968 1.116156620082256 1.0 20.80827210486539 3.196833231296058 3.691882526472247 1.015448434319585 0.8558707447640327 0.7843343111028195 0.04150487101069492 0.10432583404401662 2.954829078433405 0.012103359987345737 0.01533896726853017 1573.3785724442253 -3.196833231296058 -0.1595776895555524 GLMAGGRPEGQYS(ph)EDEDTDTDEYKEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;Q9NPQ8-2;H0YE35;H0YC88 Q9NPQ8-4 RIC8A Synembryn-A 1 GLMAGGRPEGQYS(1)EDEDTDTDEYKEAK;GLMAGGRPEGQYS(1)EDEDTDTDEYKEAK 142.68 1.0139e-07 305480000.0 205861.0 193005.0 142682.0 158956.0 174677.0 214843.0 261993.0 206632.0 340590.0 246774.0 True False 204752.6672493073 199429.05475101384 162770.3853858235 179079.81330187406 196921.08055830633 199991.40909602286 249319.3976795478 222051.92909603575 256656.15817217942 231024.67204614897 0.8862805233564247 0.8632370429733857 0.7045584523254246 0.7751544963392545 0.8523811713017813 0.8656712173844057 1.079189488600353 0.9611611051294087 1.1109469646640613 1.0 17.817687405463143 2.372861587052941 4.115636124453907 1.0280186865469556 0.8139555528254909 0.7434233389578301 0.061652887609251784 0.11788615221002684 3.6644263770704 0.02306713098881828 0.01898665530812907 235.97260507244894 -2.372861587052941 -0.21406313372146468 GLNNDS(ph)PERR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLNNDSPERR 10 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 GLNNDS(1)PERR 105.95 0.0015197 149620000.0 64164.0 78725.0 71855.0 72494.0 66930.0 60681.0 64478.0 70060.0 82333.0 79454.0 True False 63818.54815329055 81345.31403473247 81971.5594251438 81671.73296702273 75453.13877480966 56486.265297709324 61358.9528101204 75288.23295747155 62043.13535567708 74383.17769600822 0.8579701772638221 1.093598264478258 1.1020174448602889 1.0979866079505454 1.0143844497095056 0.7593957000406648 0.8249036235166548 1.0121674723976186 0.8341017052166975 1.0 16.182688761652965 2.9760734711773846 23.683928219494398 0.8916629540393014 1.0476690290855064 0.36210189972114637 0.09752114879187584 421.46943094208586 417196.4170932467 0.03006734562582883 0.032086912823384654 946.3972532898975 -2.9760734711773846 0.156006075046205 GLNPDGTPALSTLGGFS(ph)PASKPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 GLNPDGT(0.001)PALS(0.002)T(0.002)LGGFS(0.929)PAS(0.098)KPS(0.547)S(0.422)PR 44.955 0.090477 682940000.0 128720.0 119560.0 105400.0 118970.0 119250.0 118100.0 139000.0 141060.0 172290.0 131810.0 True False 128026.98582213653 123539.48232445384 120239.40384677683 134031.58980173123 134435.78064987375 109936.02497749649 132276.03896843467 151586.6134881661 129831.4380677202 123397.77295178165 1.0375145576749085 1.0011483948962967 0.9744049748269041 1.0861751115565497 1.0894506232491348 0.8909076910201175 1.0719483488581456 1.2284388110261877 1.0521376112553713 1.0 16.91295683180572 2.000764833718537 24.99998991486173 1.1267290766101488 1.0147016317509538 0.14803428707856792 0.07766451301730908 30.906861808729555 1010216.319730025 0.028650849729203773 0.020983643304257733 100.1762646356954 -2.000764833718537 -0.11202744485919491 GLNPDGTPALSTLGGFS(ph)PASKPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 GLNPDGTPALSTLGGFS(0.999)PAS(0.001)KPS(0.039)S(0.961)PR;GLNPDGTPALS(0.001)TLGGFS(0.987)PAS(0.012)KPS(0.018)S(0.982)PR 155.98 2.1048e-08 3620660000.0 1550950.0 1617050.0 1539680.0 1400960.0 1450810.0 1895130.0 1815800.0 1780630.0 2428970.0 1802640.0 True False 1542599.8575267422 1670872.5317226339 1756453.5608615328 1578321.3923563343 1635562.0538754147 1764124.1237561658 1727962.8169703872 1913509.6524559306 1830382.8900304763 1687593.9718822495 0.9140823463633324 0.9900915501961852 1.040803410136907 0.9352494845640871 0.9691679877543049 1.0453486757768866 1.0239209464840127 1.1338685041175558 1.0846109434658433 1.0 20.686536408669166 2.4224416043417443 1.787503515515648 1.0817511546044947 0.9731716780384473 0.4516861935509441 0.04689996670311702 0.288145330351673 1.874134245497499 0.021061570594978568 0.015899337996914363 264.50970084963143 -2.4224416043417443 -0.10857947656604738 GLNPDGTPALSTLGGFSPASKPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 GLNPDGTPALSTLGGFSPAS(0.005)KPS(0.186)S(0.809)PR;GLNPDGTPALSTLGGFSPAS(0.001)KPS(0.033)S(0.965)PR 186.88 7.4514e-18 1309680000.0 686600.0 735850.0 678270.0 661670.0 627640.0 748360.0 884410.0 775230.0 925430.0 928970.0 True False 682903.4218884312 760342.322419281 773764.5203714729 745437.3541574465 707566.2336862629 696627.6346499528 841627.709525707 833081.599138176 697370.1766266773 869682.3392687702 0.7852331719908411 0.874275914420175 0.8897093633315067 0.8571375092935785 0.8135915859590587 0.8010138911590156 0.9677415206951867 0.9579148173097684 0.8018676994326766 1.0 19.730129011893986 2.236677465560601 24.999783359573723 0.9329449973485513 0.8407999386687801 0.39760994859042254 0.05718611269237506 53.677254970000426 712574.5837991631 0.020767022177868934 0.016117984995277234 172.45566518810895 -2.236677465560601 -0.09214505867977119 GLNVIGASDQS(ph)PLQSPSNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLNVIGASDQSPLQSPSNLR 20 0 Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;B4DJX4;Q9HAU0-5;Q9HAU0-8;H0YGJ6 Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 GLNVIGASDQS(1)PLQSPSNLR;GLNVIGASDQS(1)PLQSPSNLR;GLNVIGASDQS(1)PLQSPSNLR;GLNVIGASDQS(1)PLQSPSNLR 280.2 1.1151e-44 485230000.0 331583.0 392099.0 372246.0 421006.0 359228.0 423916.0 404616.0 341184.0 401488.0 380669.0 True False 329797.7939703349 405149.7781861489 424655.00117976544 474305.31643328234 404973.5564888296 394611.68471092713 385043.1782967784 366644.8825772474 302546.6620635719 356374.3785128726 0.925425097467893 1.136865618333206 1.1915980126063592 1.3309186771858514 1.1363711335780036 1.1072953290234173 1.0804457377198071 1.0288194232908463 0.8489573894904557 1.0 18.443034092662675 1.7103789524036617 1.6288036146204898 0.9286369065081141 1.149295843325301 0.3985636243739744 0.1007723144788937 0.3565659648131386 1.8708858746528065 0.08045496538235804 0.031069499503071165 51.330908682666895 -1.7103789524036617 0.22065893681718696 GLPFGCSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPFGCSK 8 0 P31942;P31942-2;P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;D6R9T0;D6RFM3;E5RGV0;D6RDU3;D6RJ04;D6RIH9;D6RAM1;E5RGH4;H0YAQ2;P55795 P31942;P31943;P55795 HNRNPH3;HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H3;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 95.531 0.022298 274100000.0 624940.0 1168600.0 1080500.0 1155400.0 1160000.0 960160.0 1086400.0 805920.0 778560.0 967330.0 False True 621575.3924773618 1207496.1445663825 1232625.0081256398 1301673.5215341682 1307719.1241413318 893786.3991735233 1033846.6815489744 866061.8427788379 586694.3201695068 905594.1712271201 0.6863730048473035 1.3333744661034777 1.3611229481030984 1.4373695888196178 1.4440454297197105 0.9869612985277978 1.141622499787147 0.9563465294893472 0.6478556717900581 1.0 19.788505146863685 1.9141910457049038 1.3893709729944728 0.8341821491292247 1.2544549991179104 0.3089235086613067 0.23150160888023527 0.48519671345657583 1.7416721535598747 0.1702361396567441 0.07511890394071656 82.07124955326267 -1.9141910457049038 0.42027284998868564 GLPGDVTNQEVHDLLSDYELK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPGDVTNQEVHDLLSDYELK 21 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EKR9 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 0 235.5 8.3727e-30 258780000.0 177590.0 187070.0 160000.0 145500.0 153570.0 203230.0 193830.0 175900.0 262910.0 200620.0 False True 176633.8751721039 193296.511863797 182526.60925506934 163920.2850815488 173126.2292192968 189181.18845196124 184453.70239749434 189026.5512021014 198119.353313508 187816.25984057665 0.9404610406044469 1.0291787943592963 0.9718360349098779 0.8727694035686187 0.9217850965952089 1.007267361263307 0.9820965583813854 1.0064440180128817 1.0548573029921737 1.0 17.518962441453635 2.719284827258085 23.107900182710907 1.0078472731328676 0.9489930781696485 0.3738258145889871 0.04063446376727199 394.3398263905394 472734.720083916 0.014354592797247778 0.013558640837136718 523.9439468031043 -2.719284827258085 -0.058854194963219086 GLPNGPTHAFSSPS(ph)ES(ph)PDSTVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPNGPTHAFSSPSESPDSTVDR 23 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 2 GLPNGPTHAFS(0.288)S(0.306)PS(0.727)ES(0.641)PDS(0.019)T(0.019)VDR 57.484 0.043075 147480000.0 51578.0 58627.0 50027.0 45983.0 52092.0 56950.0 55001.0 48850.0 73492.0 63043.0 True False 51300.30977885449 60578.364254230124 57070.36675752088 51804.44308525678 58725.60742652602 53013.18054588002 52340.391505776075 52495.435055273796 55380.88134234659 59019.54176617225 0.8692088796978406 1.0264119720589109 0.9669740741740465 0.8777506828246693 0.995019711592971 0.8982309750202966 0.8868315466280965 0.8894585332982401 0.9383482095092917 1.0 15.848905099129311 2.689316418153886 24.996569704519498 0.9106945183683511 0.9487352678357871 0.0255526411642093 0.054578183127299645 879.7884870310979 446583.61683644133 0.016897861229399937 0.015931497863162537 489.0085112708597 -2.689316418153886 0.038040749467435964 GLPNGPTHAFSSPSES(ph)PDSTVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLPNGPTHAFSSPSESPDSTVDR 23 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 GLPNGPTHAFS(0.005)S(0.056)PS(0.393)ES(0.534)PDS(0.009)T(0.003)VDR;GLPNGPTHAFS(0.002)S(0.006)PS(0.246)ES(0.74)PDS(0.006)TVDR 231.07 1.8112e-33 599860000.0 141305.0 197515.0 166514.0 175857.0 185416.0 198998.0 210800.0 169927.0 199132.0 189188.0 True False 140544.22958046143 204089.1673746611 189957.7238343663 198120.4781689758 209027.62855326632 185241.73665090508 200602.79866579885 182607.81561182212 150058.58683209293 177113.85986800407 0.7935247398775198 1.1523048931730169 1.0725175543909113 1.1186051634616687 1.1801878673359967 1.0458906874310028 1.1326205572804984 1.0310193439853463 0.8472436146099782 1.0 17.43431758760202 1.4255652199321673 5.8943991407235155 0.924999379128265 1.0788992831600797 0.22481994464758914 0.10697733047484165 0.25499188343418344 16.199015073651516 0.06662662587247427 0.025344903266872797 26.64190160001456 -1.4255652199321673 0.15389990403181464 GLPNVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPNVQR 7 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 82.26299999999998 0.058079 182440000.0 259760.0 251520.0 236890.0 225440.0 219600.0 237500.0 268800.0 259000.0 366280.0 251590.0 False True 258361.48102204912 259891.69115294944 270242.05291520857 253980.6808851158 247564.7583288244 221082.1840148641 255797.11708428213 278327.8951753512 276015.20190054295 235533.31080296406 1.096921196162279 1.103417984772279 1.1473623496987235 1.0783217032837615 1.0510817237903358 0.9386450827747711 1.0860337173210706 1.1816922804952503 1.171873315751266 1.0 17.845571584940597 -0.7269401260614452 5.6828067084748835 0.9999999996217658 1.0963377273255461 0.15877092757529754 0.0655673952383515 5.237709797009796e-09 1.1060118806493576e-09 0.07029934722140271 0.01656971418023594 0.18752530217017885 0.7269401260614452 0.09633772770378035 GLPPS(ph)MER ddPTM_BT-474_Trastuzumab_2h_R1 9 GLPPSMER 8 0 P38159;P38159-2;H3BUY5 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 1 GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER 126.31 0.0012844000000000002 6719270000.0 3865320.0 3883690.0 3468950.0 4023090.0 3547270.0 3908740.0 3629310.0 3425072.0 4628030.0 3853290.0 True False 3844509.546597425 4012956.2739098193 3957348.007346079 4532412.781503288 3998993.8081834633 3638538.003984248 3453746.409989426 3680668.2648032103 3487514.0189247825 3607369.7332324553 1.0657375957835282 1.112432761449692 1.097017577901564 1.2564314491384085 1.1085622223148404 1.008640165288481 0.9574140344340661 1.0203191069924165 0.9667747630070972 1.0 21.78251586740509 2.748505069537675 4.046298318195084 0.9900058271429969 1.1342668713202122 0.6618351373915603 0.04938425289075869 0.1354039231694786 5.282320413867341 0.016356290387023596 0.01650079594184045 560.4089590032518 -2.748505069537675 0.1442610441772153 GLPQLGTLGAGNHYAEIQVVDEIFNEYAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPQLGTLGAGNHYAEIQVVDEIFNEYAAK 30 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 260.7 2.6399e-58 216400000.0 128250.0 146100.0 131790.0 127540.0 128780.0 146310.0 157930.0 142230.0 187160.0 142170.0 False True 127559.51624991448 150962.85018068497 150344.88646078494 143686.5509230293 145179.3696611384 136195.9340766937 150290.32254881217 152843.92482930602 141036.92581551164 133096.58888213933 0.9583980875939045 1.1342353057174643 1.1295923338344864 1.0795659913588596 1.090782046936595 1.023286435967934 1.129182376581404 1.1483684601763422 1.0596584555627018 1.0 17.022114071487643 GLPRPDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPRPDNR 8 1 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 88.94200000000002 0.013003 88693000.0 191200.0 314270.0 334040.0 329230.0 263780.0 193080.0 251800.0 185020.0 158240.0 247910.0 False True 190170.60044431724 324730.28696977353 381069.9284722703 370910.48424328736 297370.81945344835 179732.83406143123 239619.47203058907 198827.13191252318 119243.8723073658 232088.17155357057 0.8193894551856645 1.399167759373809 1.6419187842337402 1.5981447126773276 1.2812838218461695 0.7744161749317988 1.032450169375737 0.8566879155520855 0.513786943596313 1.0 17.824313471587732 2.825554667720209 4.503760104003208 0.8457174915853146 1.3914552431888094 0.5177132946887844 0.24706507405562833 0.18588470654693712 6.689147902985212 0.07921812757983192 0.08392306824473485 669.1980514394119 -2.825554667720209 0.5457377516034948 GLPS(ph)PYNMSSAPGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 GLPSPYNMSSAPGSR 15 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 2 GLPS(0.973)PY(0.027)NMSS(0.001)APGS(0.999)R;GLPS(1)PYNMSSAPGS(1)R 188.04 4.6111e-07 195052000.0 254900.0 294860.0 253580.0 270690.0 269790.0 295470.0 258360.0 230530.0 298800.0 237240.0 True False 253527.64672205233 304674.23685336584 289281.85984312807 304959.3262455293 304146.1573293874 275044.8543615658 245862.13976895553 247733.31920762084 225164.74371486928 222099.14008861713 1.1415066560856348 1.3717938607587647 1.3024897787884508 1.373077473977842 1.3694161859790797 1.2383877499562737 1.1069927585980612 1.11541773240894 1.0138028613034205 1.0 17.760844281584248 2.1609077630616054 1.5327356631644768 1.0422531074286867 1.3188723857605407 0.7490017698771448 0.06976928775668516 0.1973537130857589 0.8954236079973663 0.04118451611280016 0.022919925365397543 144.84641911259445 -2.1609077630616054 0.27661927833185396 GLPS(ph)PYNMSSAPGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLPSPYNMSSAPGSR 15 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 GLPS(1)PYNMSSAPGSR;GLPS(0.997)PY(0.001)NMS(0.001)SAPGSR 131.61 5.5113e-05 662160000.0 287660.0 334490.0 338960.0 294790.0 274938.0 301437.0 352230.0 269187.0 375760.0 286480.0 True False 286111.2705220309 345623.2974465247 386682.62170686433 332110.38377450005 309949.7246148006 280599.36969637265 335191.28925073205 289275.1008438895 283158.9829260346 268196.6011321327 1.0667967801018932 1.2886938014410039 1.441787927492627 1.2383094430450254 1.1556810314016521 1.0462450624351107 1.2497969319364828 1.0785934632384548 1.0557888568711964 1.0 18.03293142845441 3.1923850080383525 3.2456387587374533 1.1037129115103663 1.277053908863397 0.366335112693736 0.10525922039450218 0.26953481013722674 5.808147931247926 0.03165746224895841 0.040427351464873376 1557.3456281654148 -3.1923850080383525 0.17334099735303066 GLPSPYNMSS(ph)APGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 GLPSPYNMSSAPGSR 15 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 2 GLPSPYNMS(0.016)S(0.984)APGS(1)R;GLPS(0.001)PYNMS(0.021)S(0.978)APGS(1)R;GLPSPYNMS(0.022)S(0.978)APGS(1)R;GLPSPYNMS(0.003)S(0.997)APGS(1)R;GLPSPYNMS(0.017)S(0.983)APGS(1)R 155.79 4.999e-06 1264190000.0 2327850.0 1605580.0 1362210.0 1681410.0 1326710.0 1890210.0 1464010.0 1452410.0 2531470.0 1689990.0 True False 2315317.1142484513 1659020.759706396 1553997.3274584236 1894276.333601149 1495658.6544737448 1759544.2317757327 1393190.2432386926 1560796.2093885427 1907623.138460105 1582133.391326768 1.4634146064680675 1.0485972730245903 0.9822163769359865 1.1972924305785744 0.9453429544391917 1.1121339334733267 0.8805769797136834 0.9865136643628183 1.2057283847984417 1.0 20.593439809395854 4.737656477964806 5.570785541790796 1.0313838884721913 1.4783087453902648 0.6170312923450636 0.10000545308250401 0.08866126046038796 11.055100905271035 0.022999948017797173 0.15122209435932052 54658.345051786586 -4.737656477964806 0.4469248569180735 GLPSPYNMSSAPGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 9 GLPSPYNMSSAPGSR 15 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 GLPSPYNMSSAPGS(1)R;GLPSPYNMSSAPGS(1)R;GLPSPYNMSSAPGS(1)R;GLPSPYNMSS(0.001)APGS(0.999)R;GLPSPYNMSSAPGS(1)R;GLPSPYNMSSAPGS(1)R;GLPSPYNMSS(0.001)APGS(0.999)R;GLPSPYNMSS(0.003)APGS(0.997)R;GLPSPYNMSSAPGS(1)R 184.37 4.8987e-07 19617120000.0 4757035.0 5229705.0 4579660.0 4979256.0 4779162.0 5629506.0 5105857.0 4394051.0 5942710.0 5076990.0 True False 4731423.652116269 5403772.569501568 5224436.320881688 5609629.299065385 5387759.952387522 5240351.500651709 4858867.190642125 4721957.398158867 4478208.748734238 4752972.151570178 0.9954663106017169 1.1369249381603033 1.099193547590166 1.180236096525877 1.133555968891515 1.102542016561263 1.0222797516364501 0.9934746612388493 0.9421912449570802 1.0 22.180398518006438 2.089772674476329 2.1340154102535385 0.9768587410858404 1.1150086860532384 0.6169259795346413 0.04657177977371143 0.2055898156741233 1.8085251021391116 0.024394164465634197 0.014078156045252279 122.96249719112058 -2.089772674476329 0.13814994496739808 GLPTGDS(ph)PLGPMTHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPTGDSPLGPMTHR 15 0 J3QQZ9;Q9NVS9-3;Q9NVS9;Q9NVS9-4 J3QQZ9 PNPO Pyridoxine-5-phosphate oxidase 1 GLPTGDS(1)PLGPMTHR 159.26 1.144e-06 366730000.0 138600.0 151290.0 139500.0 156030.0 133520.0 126420.0 135530.0 96805.0 149020.0 141580.0 True False 137853.79299990754 156325.59619326366 159140.38744426338 175783.38200188387 150522.98056495737 117680.88296066983 128973.89612512186 104029.08066582964 112296.01776569553 132544.24318726372 1.0400586980238913 1.1794219985276968 1.2006586149458305 1.326224193332412 1.1356432912162966 0.8878611407845578 0.9730629790001702 0.7848630628103045 0.8472342145183877 1.0 17.016114485226318 2.7814321044310977 3.916219456782034 0.8812403547432437 1.1914022318091 0.7203815785083658 0.08652451252359078 0.1154210792100463 3.808865952919827 0.028334447698351604 0.029303147209647835 604.5498314622732 -2.7814321044310977 0.3101618770658563 GLPVTCEVAPHHLFLSHDDLER ddPTM_BT-474_Trastuzumab_2h_R1 4 GLPVTCEVAPHHLFLSHDDLER 22 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 ;;; 234.04 6.8948e-31 1555430000.0 504903.0 700670.0 617962.0 664908.0 708231.0 671273.0 647085.0 209698.0 754460.0 518613.0 False True 502184.6583479967 723991.3773860408 704965.6781780068 749085.284625447 798420.0198359806 624869.4775166726 615783.0264452491 225346.72958486783 568533.4422460517 485514.674333072 1.0343346656572707 1.4911833064171596 1.4519966448931416 1.5428684738611231 1.6444817469888662 1.2870249048085427 1.2683098143040072 0.4641398942151764 1.1709912641199127 1.0 18.889155375163906 1.937536960959683 7.014795689003948 0.8265385967928282 1.4192955307259603 0.5169122327948087 0.2276528091151437 0.1780279345457009 17.03442195993938 0.09559278355090384 0.059560408050959725 86.60380250435995 -1.937536960959683 0.5927569339331321 GLPWQSSDQDIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLPWQSSDQDIAR 13 0 Q6NXG1;Q6NXG1-2;Q6NXG1-4;Q6NXG1-3;A0A2U3TZN9;Q6NXG1-5;H0YBR2;H0YBB3 Q6NXG1 ESRP1 Epithelial splicing regulatory protein 1 0 ;;; 207.88 1.1719e-07 793320000.0 307342.0 339989.0 331121.0 339867.0 300533.0 314175.0 316244.0 294437.0 421999.0 328832.0 False True 305687.30482090655 351305.3283373093 377739.9586446732 382894.1273526514 338804.09615135065 292456.8217383998 300946.0695506023 316409.3840607916 318003.0009468912 307845.6602327606 0.992988839244243 1.141173561036037 1.2270433124152729 1.243786016223672 1.1005647956680062 0.9500111891045487 0.9775875005775896 1.0278182379493541 1.0329949127964015 1.0 18.231847705147338 2.944838619385998 5.518743321507249 1.001274664082386 1.1580259044341517 0.5434088487497782 0.06681632097647608 0.16660980542687523 11.095288666274895 0.02163786729973714 0.023409018129676815 880.7215425905488 -2.944838619385998 0.15675124035176569 GLPWSCS(ph)ADEVQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLPWSCSADEVQR 13 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;E7EN40;D6R9T0;D6RFM3;E5RGV0;D6RDU3;D6RJ04;D6RIH9;D6RAM1;D6RDL0;D6RF17;D6R9D3;E7EQJ0 P31943;E7EQJ0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 1 GLPWS(0.144)CS(0.856)ADEVQR;GLPWS(0.042)CS(0.958)ADEVQR;GLPWS(0.444)CS(0.556)ADEVQR 164.93 3.7963e-05 201368000.0 282424.0 335248.0 270910.0 305025.0 284599.0 305007.0 297532.0 305546.0 365427.0 363651.0 True False 280903.46056425595 346406.5270183044 309051.7732080675 343641.1337250818 320840.99569956755 283922.5839992487 283139.2404773833 328347.3940511504 275372.4123209289 340442.4818427155 0.8251128326988093 1.0175185104494222 0.9077943843414039 1.0093955720950363 0.9424235012121552 0.8339810662360903 0.8316801092062115 0.9644724485437366 0.8088661874112144 1.0 18.3770515482402 2.9235011630387295 13.801730854371883 0.8875883218516282 0.9472835240907257 0.10710315970073658 0.07484659676752364 3.794520894023877 681.7078789986423 0.02158564383305741 0.02289739698133009 838.4963241083017 -2.9235011630387295 0.05969520223909752 GLPWSCS(ph)VEDVQNFLSDCTIHDGAAGVHFIYTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR 33 0 P52597;A0A1B0GW42 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 1 GLPWS(0.014)CS(0.986)VEDVQNFLSDCTIHDGAAGVHFIYTR;GLPWS(0.008)CS(0.992)VEDVQNFLSDCTIHDGAAGVHFIYTR;GLPWS(0.023)CS(0.977)VEDVQNFLSDCTIHDGAAGVHFIYTR 259.91 3.2179e-59 494480000.0 131962.2 147980.1 132974.4 151844.3 127148.6 168797.2 179902.2 110892.5 172589.9 183028.9 True False 131251.7301775786 152905.5281726405 151696.03968579535 171067.77281105332 143340.22054120377 157128.64686986865 171199.64329285733 119167.86145070536 130057.4317311743 171347.83890307505 0.765995830573753 0.8923691664365452 0.8853104927200396 0.9983655113842425 0.8365452488857235 0.9170156325038353 0.9991351182999072 0.6954733845118063 0.759025807175443 1.0 17.38656847065061 -0.8175540368447355 5.054921401323593 1.0000001459544445 0.86151946577616 0.16172492879957245 0.09491426505019093 12718865.36654431 2516135.4949149257 20.60487100364768 0.023209962045465268 0.1522109733456913 0.8175540368447355 -0.13848068017828452 GLPWSCSADEVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLPWSCSADEVQR 13 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;E7EN40;D6R9T0;D6RFM3;E5RGV0;D6RDU3;D6RJ04;D6RIH9;D6RAM1;D6RDL0;D6RF17;D6R9D3;E7EQJ0 P31943;E7EQJ0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ;;; 232.88 3.1907e-14 2912000000.0 886850.0 955870.0 947900.0 958680.0 956360.0 948480.0 942260.0 950720.0 1139840.0 1054500.0 False True 882075.2981382983 987685.5551143828 1081356.080705501 1080048.7897043242 1078146.7772101734 882913.8100817607 896679.284017247 1021667.5540583412 858941.7050734822 987200.9071971286 0.8935114339012268 1.0004909313937222 1.0953758984842292 1.094051658411468 1.092124986261671 0.8943608171801007 0.9083047609458833 1.0349135080913474 0.870077913028057 1.0 19.9129841947023 2.739248680590555 24.999976799127733 0.9484839953943279 1.0398101780183064 0.29080902037528045 0.072478286707948 89.29987241467101 3244637.818308158 0.023887095721261655 0.02399860586092875 548.5910027199358 -2.739248680590555 0.09132618262397851 GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR 33 0 P52597;A0A1B0GW42 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 249.46 7.7833e-48 37246000.0 27795.0 25295.0 20906.0 25485.0 19357.0 29165.0 24473.0 21360.0 33902.0 23512.0 False True 27645.3548083148 26136.928783849606 23849.38308179049 28711.39838696409 21821.99921207217 27148.892197025307 23289.147494061184 22953.99166388226 25547.306363525746 22011.44403036406 1.2559537107233378 1.187424539153114 1.0834992492492113 1.3043850438598061 0.9913933489311034 1.2333989609938498 1.0580472349717072 1.0428207995903398 1.1606374542389897 1.0 14.425966173897855 7.999999903892858 0.1119969525597857 0.9527581436199078 1.8007423915020067 0.3012847159306198 0.08855041270263174 121.79350253269708 0.9482584790818459 0.6987334480373544 15.99919144172514 99999977.87051524 -7.999999903892858 0.8479842478820988 GLQEFLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 GLQEFLDR 8 0 O75694;O75694-2;E9PF10 O75694 NUP155 Nuclear pore complex protein Nup155 0 ;;;;; 190.26 0.0004359 849067000.0 1121520.0 1426310.0 1258680.0 1380420.0 1271620.0 1275670.0 1308360.0 1152720.0 1432570.0 1309900.0 False True 1115481.8609325865 1473783.8661273962 1435891.2033573142 1555181.0304623507 1433553.2695177565 1187485.9355041755 1245069.628379435 1238741.8197935554 1079532.3189545185 1226301.0605381895 0.909631326945956 1.2018124370540733 1.1709124696729378 1.2681886043381754 1.1690059771200147 0.9683478011370397 1.0153050245532762 1.0101449469919777 0.8803158976970482 1.0 20.225881777737364 2.7385368515864825 24.999948768510485 0.9817033794101889 1.1555314467588598 0.44376352264698815 0.09404739669818789 2.006634181180977 2109314.7382570216 0.029527763234667503 0.029510507885245403 547.6925728485095 -2.7385368515864825 0.17382806734867084 GLQEVGLPLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLQEVGLPLHR 11 0 P11172-2;P11172-3;P11172 P11172-2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 0 145.23 3.6342e-05 317660000.0 226390.0 272840.0 239730.0 283590.0 271420.0 292560.0 246220.0 244190.0 315740.0 292300.0 False True 225171.1413942938 281921.3144647369 273481.90022948576 319492.46492286236 305983.7281676208 272336.01581216295 234309.39794825896 262412.6977716952 237930.10769923948 273645.1637493796 0.8228581068603092 1.03024409641289 0.9994033750947511 1.1675428885542902 1.1181769996412536 0.9952158922917578 0.8562526548536168 0.958952441096413 0.8694840589879744 1.0 18.0619468338273 2.4516847452654495 10.336252944313602 0.9205905129061687 1.0362627741122363 0.22655953330567924 0.09241749560931259 0.5864640350694272 230.79164104434628 0.03266458124202421 0.02743529100848673 282.9337431731635 -2.4516847452654495 0.11567226120606766 GLQLT(ph)PGIGGMQQHFFDDEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLQLTPGIGGMQQHFFDDEDR 21 0 P12270 P12270 TPR Nucleoprotein TPR 1 GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR 257.94 6.2313e-36 423275000.0 518070.0 387552.0 375293.0 466192.0 335210.0 474020.0 263599.0 322672.0 537520.0 398423.0 True False 515280.76868298755 400451.4340398691 428130.99229476653 525211.859400257 377897.0065546685 441252.1131230559 250847.70932403195 346751.4231352164 405055.39839898393 372995.3030329082 1.3814671779862224 1.0736098572387078 1.1478187226850787 1.4080924213512662 1.0131414617875976 1.1829964332932248 0.6725224346910891 0.9296401866610734 1.0859530806564799 1.0 18.50879793780259 2.3483537834414014 10.824477688361656 0.909075304965107 1.1948365419838576 0.45156531211130124 0.15039462884632224 0.3115751112494664 28.839536526253227 0.05114029871227488 0.04276662495826893 223.025120885937 -2.3483537834414014 0.28576123701875056 GLQPS(ph)TPPPKPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLQPSTPPPKPPR 13 1 A0A1B0GTL5 A0A1B0GTL5 1 GLQPS(0.508)T(0.492)PPPKPPR 80.53399999999998 0.010615 486460000.0 719320.0 754490.0 663600.0 715040.0 746660.0 812590.0 731640.0 745760.0 876230.0 764990.0 True False 715447.2610439647 779602.7435511644 757029.1118853992 805563.9906852971 841742.7251994539 756417.5659311082 696247.7780637807 801412.3980925494 660294.857380455 716167.6832591108 0.9989940593076364 1.0885757089783437 1.0570556722698483 1.124825944420397 1.1753430724057257 1.056201757790619 0.9721854173806346 1.1190289883585782 0.9219835979970618 1.0 19.44993789360666 1.2371828603119377 24.999957271828233 0.9609917787196448 1.07548299016828 0.3701958636271441 0.058949142029947534 38.87415762519728 705259.0146457644 0.047669135101389176 0.014394024822191497 17.26564711503217 -1.2371828603119377 0.11449121144863528 GLQPST(ph)PPPKPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLQPSTPPPKPPR 13 1 A0A1B0GTL5 A0A1B0GTL5 1 GLQPS(0.022)T(0.978)PPPKPPR 78.069 0.039176 455420000.0 814660.0 868770.0 741240.0 774880.0 831900.0 956960.0 859340.0 809930.0 1023700.0 850920.0 True False 810273.9610772341 897686.4842674446 845600.1490264212 872979.7285497646 937837.5339423903 890807.6076415334 817770.4412024074 870371.0893412053 771422.8518772138 796613.557090737 1.0171480937838735 1.1268782413719265 1.061493545395568 1.0958635097021443 1.1772804085426423 1.118243092541378 1.026558528816577 1.0925888488765287 0.9683777598444085 1.0 19.603520506713785 1.243173598366471 24.96083278084715 0.9841888557406124 1.0908325933345022 0.46413358793912485 0.04524772982587119 89.3366503794766 483422.47622729064 0.032760448372673015 0.011076475329829279 17.50546285925127 -1.243173598366471 0.10664373759388979 GLQS(ph)LPTHDPSPLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLQSLPTHDPSPLQR 15 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 GLQS(1)LPTHDPSPLQR;GLQS(0.991)LPT(0.009)HDPSPLQR 114.55 0.00038485 541710000.0 389890.0 445950.0 546740.0 567360.0 627120.0 815630.0 502100.0 481210.0 676630.0 547880.0 True False 387790.8755608513 460793.17616753286 623716.2396507277 639187.7178272688 706980.0147685437 759247.4178865 477811.5047917347 517120.3337348682 509883.60287748347 512913.82933633303 0.756054630195134 0.8983832172428654 1.2160253905763538 1.2461892841811721 1.3783602124421481 1.4802631055374385 0.9315629204421768 1.008201191229291 0.9940921334432132 1.0 18.968356944652363 GLQSIFQEQGMAESVHTWQDHGYLATYTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLQSIFQEQGMAESVHTWQDHGYLATYTNK 30 0 P52788;H7C2R7;P52788-2 P52788 SMS Spermine synthase 0 ; 336.05 9.170999999999999e-106 2539010000.0 586480.0 858720.0 849230.0 807470.0 844310.0 1001920.0 1083710.0 432220.0 903680.0 848360.0 False True 583322.4568440539 887301.9760927977 968794.2023605151 909695.619208235 951827.8738825583 932659.6286659909 1031286.807125772 464474.45116868865 680980.1726916095 794216.9384824617 0.7344623724075046 1.1172035411234074 1.2198105522801168 1.1453994181318046 1.198448217059245 1.1743134444451115 1.2984951052495657 0.5848206310686049 0.8574233810635948 1.0 19.599173604380102 1.7422894907751174 24.999999999994138 0.7852968482848227 1.135368796316178 0.4095708359243809 0.17084593067520976 0.5592040025294929 3768.3399923694737 0.0772517526943811 0.04283998419231589 55.24455641613232 -1.7422894907751174 0.35007194803135533 GLQSLPTHDPS(ph)PLQR ddPTM_BT-474_Trastuzumab_2h_R1 6 GLQSLPTHDPSPLQR 15 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 GLQSLPTHDPS(1)PLQR;GLQSLPTHDPS(1)PLQR;GLQSLPTHDPS(1)PLQR;GLQSLPTHDPS(1)PLQR;GLQSLPTHDPS(1)PLQR;GLQSLPTHDPS(1)PLQR 195.46 6.0678e-09 8155290000.0 3559410.0 5101580.0 5651700.0 5665740.0 5818790.0 6332460.0 5200950.0 4226410.0 4757890.0 4902960.0 True False 3540246.532047626 5271383.006329765 6447410.23454296 6383022.1030785935 6559778.415829604 5894711.945207432 4949360.178941587 4541806.1754751215 3585371.7619596347 4590048.895164753 0.7712873245810062 1.14843722294173 1.4046495760284357 1.390621810108078 1.4291304004930756 1.2842372880639759 1.0782804915554034 0.9894897155146971 0.7811184246286647 1.0 22.130078091249967 1.8731845413024568 2.106543007745597 0.9012207935820497 1.2553860750273385 0.3608686846819903 0.18691288783305227 0.34497154780603584 2.8495881485403993 0.1222521205031096 0.05786551573160148 74.67660083467354 -1.8731845413024568 0.3541652814452888 GLQSLPTHDPSPLQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLQSLPTHDPSPLQR 15 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 ;;; 159.34 1.7711e-06 2332890000.0 1289930.0 2046530.0 2256250.0 2135560.0 2437580.0 2270720.0 1981290.0 1675300.0 1799890.0 2043940.0 False True 1282985.1602046958 2114647.513896491 2573910.3883234365 2405921.677036102 2747991.364331403 2113750.4710999234 1885447.4334371965 1800319.3930010297 1356331.226790348 1913493.9992949292 0.6704934327870592 1.1051236715012858 1.3451363784113526 1.2573447724020137 1.4361118275489566 1.104654873168551 0.9853427468975251 0.9408544754592378 0.7088243952111266 1.0 20.86777794605516 2.069034924559036 2.0942948560809445 0.8756025376126539 1.1796726559142652 0.2662908626205104 0.2034118557778984 0.4338297600374626 3.6398574132571064 0.11424962972664467 0.06420223890873292 117.22896335023938 -2.069034924559036 0.30407011830161124 GLQTSQDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLQTSQDAR 9 0 P27797 P27797 CALR Calreticulin 0 ;;; 172.59 0.00013045 1056540000.0 1178880.0 1559020.0 1487430.0 1376650.0 1252360.0 1399300.0 1481650.0 1275910.0 1792300.0 1430880.0 False True 1172533.0410658813 1610911.0382525066 1696847.2150266713 1550933.748848895 1411840.6226807195 1302569.6845978934 1409976.9290473484 1371124.883139701 1350611.680589557 1339560.0133620007 0.8753120646853899 1.2025672774521499 1.2667198170300398 1.1577934048332728 1.0539584703915656 0.9723862101024726 1.0525671974252329 1.023563610038254 1.0082502218021714 1.0 20.35332778584621 3.107220609742799 4.476291526355632 1.0167899634991946 1.1406438038509044 0.22812911979924955 0.0970753405247817 0.3013697428558978 10.49742976773753 0.02880894253155012 0.034861338914199666 1280.0313600308423 -3.107220609742799 0.12385384035170977 GLQVDLQS(ph)DGAAAEDIVASEQSLGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLQVDLQSDGAAAEDIVASEQSLGQK 26 0 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 1 GLQVDLQS(1)DGAAAEDIVASEQSLGQK;GLQVDLQS(1)DGAAAEDIVASEQSLGQK 228.21 7.242799999999998e-35 126913000.0 122495.0 108406.0 114624.0 116376.0 101902.0 133181.0 125187.0 117501.0 166782.0 134853.0 True False 121835.50053047379 112014.22817718911 130762.06287033163 131109.18966769986 114878.61567952568 123974.51094435192 119131.22654921912 126269.52127798837 125680.81086430169 126246.56608653806 0.9650599165363387 0.8872655443190975 1.0357672840043692 1.0385168779785157 0.9099543792801461 0.9820030341211125 0.9436393419806635 1.0001818282442199 0.995518648627254 1.0 16.945884621451363 4.24534647125784 24.99999834742328 0.9854377357470923 0.9261627461871244 0.27142633799167815 0.040452645575136864 212.18312974834603 781691.4187066844 0.009870838775597364 0.025767491101256788 17593.266090404264 -4.24534647125784 -0.059274989559967906 GLS(ph)GEEEDDEPDCCNDER ddPTM_BT-474_Trastuzumab_2h_R1 1 GLSGEEEDDEPDCCNDER 18 0 Q6P158-2;Q6P158;A0A087WW12;A0A087WZ11;Q6P158-3 Q6P158-2 DHX57 Putative ATP-dependent RNA helicase DHX57 1 GLS(1)GEEEDDEPDCCNDER 322.68 4.0332999999999994e-52 0.0 184830.0 248100.0 166900.0 221140.0 172710.0 223500.0 203820.0 167980.0 235050.0 220190.0 True False 183834.89581654355 256357.85852038313 190398.0692791941 249136.30132600502 194703.59476762853 208049.97106240893 193960.4479319883 180515.52058515666 177125.0770086343 206137.2856858569 0.8918080744339425 1.2436268269829647 0.923646921253011 1.208594071165158 0.9445336107915345 1.0092786968169691 0.9409285044510313 0.8757053338727543 0.8592578311066161 1.0 17.65324595461193 2.5152026753132017 1.3659459093536563 0.9005259192097967 1.0634742758466689 0.21612070824322138 0.11243053489053075 0.5275252660379897 1.9947151103561576 0.05155088555284705 0.03961487441302351 327.49349295391835 -2.5152026753132017 0.16294835663687213 GLS(ph)GPCRPPPPPQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLSGPCRPPPPPQAR 15 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR 133.52 2.4697e-05 775160000.0 180048.0 209717.0 170649.0 224500.0 205241.0 192583.0 172998.0 170742.0 213066.0 211265.0 True False 179078.64157321354 216697.3035683966 194674.8958923018 252921.67698149628 231377.22479128512 179270.1905016193 164629.42582346246 183483.63505030834 160558.73923812684 197781.88682693365 0.9054349943072081 1.095637760590355 0.9842908216496561 1.2787908996075659 1.1698605393210177 0.9064034800036428 0.8323786796893043 0.9277069705117293 0.8117969841122084 1.0 17.59355078232597 2.670314318234494 7.161802400327375 0.8880087100257587 1.0920405655421836 0.45130993925716 0.10518652548504516 0.2430973115532769 22.207341169925748 0.03452768251600282 0.032568233176453555 468.07378454518187 -2.670314318234494 0.204031855516425 GLS(ph)LEHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLSLEHQK 8 0 A0A087WXN9;Q765P7 A0A087WXN9 MTSS1L MTSS1-like protein 1 GLS(1)LEHQK;GLS(1)LEHQK 105.2 0.0028564 588420000.0 799460.0 718220.0 568190.0 689790.0 644440.0 772440.0 711800.0 593920.0 911040.0 841260.0 True False 795155.7961883564 742125.5185268422 648186.2132039866 777117.3432742386 726505.6141048608 719043.0409281752 677367.5146599415 638241.3262646514 686526.399310556 787570.0665610775 1.0096318155670923 0.9422977713809404 0.8230203771383668 0.986727881453798 0.9224647367276737 0.9129892963909544 0.8600727013631497 0.8103930727732331 0.8717019963801718 1.0 19.58704875372535 2.3666686793218226 3.512463171058554 0.8630476923224617 0.9325503488246233 0.07972163666939724 0.06535518907767429 0.39353281083094993 9.480036774730655 0.02372524576647636 0.01929586485891027 232.63158479968828 -2.3666686793218226 0.06950265650216159 GLS(ph)PNNSGHDSTDTDSNHEER ddPTM_BT-474_Trastuzumab_2h_R1 4 GLSPNNSGHDSTDTDSNHEER 21 0 Q9UKT9-9;Q9UKT9-6;Q9UKT9-8;Q9UKT9-4;Q9UKT9-3;Q9UKT9-7;Q9UKT9;Q9UKT9-16;Q9UKT9-12;Q9UKT9-11;Q9UKT9-10;Q9UKT9-13;Q9UKT9-5;Q9UKT9-2;Q9UKT9-15 Q9UKT9-9 IKZF3 Zinc finger protein Aiolos 1 GLS(1)PNNSGHDSTDTDSNHEER;GLS(1)PNNSGHDSTDTDSNHEER;GLS(0.922)PNNS(0.078)GHDSTDTDSNHEER;GLS(0.811)PNNS(0.189)GHDSTDTDSNHEER 286.96 8.779699999999997e-46 1298430000.0 410614.0 628443.0 661212.0 735560.0 706651.0 699209.0 703572.0 543974.0 650994.0 713775.0 True False 408403.29984750424 649360.3453531845 754304.9022422681 828681.8205813338 796638.8162013752 650874.3275909439 669537.5344539536 584568.1021240023 490565.251572682 668221.2684064785 0.6111797381448698 0.9717744346894674 1.1288250432990186 1.2401308664680923 1.1921781808907952 0.9740401246777102 1.0019698056762156 0.8748121763888694 0.734135943835705 1.0 19.34996637649946 1.7913317947453877 2.628998658428169 0.8488340897748008 1.038239317625856 0.12601676248983407 0.1731053790493926 0.4903577150237573 6.552483225483402 0.10781281819085765 0.050950515651086506 61.84887361961153 -1.7913317947453877 0.18940522785105518 GLS(ph)VDSAQEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLSVDSAQEVK 11 0 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 1 GLS(0.955)VDS(0.045)AQEVK;GLS(0.978)VDS(0.022)AQEVK 177.31 3.8596e-05 355220000.0 1340150.0 872450.0 814070.0 952900.0 857030.0 1029040.0 812330.0 839550.0 1451760.0 1154420.0 True False 1332934.7813046614 901488.9708428386 928683.9799767145 1073537.0422969619 966167.69048521 957904.8868996034 773034.494498047 902201.4841485186 1093993.2005873441 1080743.9272513143 1.2333493140181238 0.834137438214083 0.8593006692516533 0.9933315517463217 0.8939839180429086 0.8863384403517948 0.7152799798414107 0.8347967186298354 1.0122594011420698 1.0 20.04359329901251 3.03463168818377 3.180431191506862 0.8623775830601151 0.9610941750186658 0.07657484342268861 0.12896781975614793 0.583351668019847 12.188715588615302 0.0396191491198199 0.04672407605605187 1083.0080585661751 -3.03463168818377 0.09871659195855065 GLSAS(ph)LPDLDSENWIEVK ddPTM_BT-474_Trastuzumab_2h_R1 9 GLSASLPDLDSENWIEVK 18 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 GLS(0.006)AS(0.994)LPDLDSENWIEVK;GLS(0.004)AS(0.996)LPDLDSENWIEVK;GLSAS(1)LPDLDSENWIEVK;GLSAS(1)LPDLDSENWIEVK;GLS(0.011)AS(0.989)LPDLDSENWIEVK;GLS(0.002)AS(0.998)LPDLDSENWIEVK;GLS(0.018)AS(0.982)LPDLDSENWIEVK;GLSAS(1)LPDLDSENWIEVK;GLS(0.001)AS(0.999)LPDLDSENWIEVK 384.41 2.0226999999999997e-126 8390802000.0 5067902.0 3691657.0 3554791.0 3914085.0 3267621.0 4025390.0 3873144.0 4372403.0 6143804.0 4551366.0 True False 5040616.978728849 3814531.5715912166 4055274.6740027284 4409607.759679829 3683733.1656429437 3747124.2640488176 3685785.2278730855 4698693.914472552 4629745.826955784 4260893.92525953 1.1829951806232368 0.8952420873417718 0.951742696517779 1.0349020269053615 0.8645446777740586 0.8794220954046824 0.8650262814624248 1.1027483896319612 1.0865667881356111 1.0 22.022724705466707 1.689281235154928 9.136302264264486 1.0697964296834357 0.9481347503641064 0.21525392636972385 0.09511864979822676 0.16255518870939975 23.30543276264658 0.04522105816048729 0.024170686866897877 48.89688973918388 -1.689281235154928 -0.12166167931932925 GLSDHVS(ph)LDGQELGTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLSDHVSLDGQELGTR 16 0 Q7L8J4;Q7L8J4-2 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 GLSDHVS(1)LDGQELGTR;GLSDHVS(1)LDGQELGTR;GLSDHVS(1)LDGQELGTR 221.85 1.0683e-14 3004700000.0 2373610.0 2748130.0 2667450.0 2859690.0 2713200.0 2880440.0 2999250.0 2486720.0 3141350.0 2924580.0 True False 2360830.747492864 2839599.8457703353 3043003.7741089617 3221726.4607893755 3058709.937603673 2681321.962626422 2854164.819252361 2672291.6737082996 2367206.384433416 2737930.8005410912 0.86226823082099 1.0371335335462648 1.1114246472217557 1.1767012008311797 1.1171611557893233 0.9793242261990398 1.0424532346428546 0.9760260095617392 0.8645968641594559 1.0 21.384654553181562 1.6999051923475605 1.9853865013875331 0.9297941876093332 1.0578801318475384 0.2193935908573027 0.08659440156962936 0.4424930428870595 3.6239727573375626 0.06517475767482978 0.026004954357053398 50.1077835048813 -1.6999051923475605 0.12808594423820518 GLSEDTTEETLKESFDGSVR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLSEDTTEETLKESFDGSVR 20 1 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;; 273.79 1.6736e-44 9710440000.0 3408310.0 3842850.0 3530820.0 3878990.0 3666840.0 4323780.0 4373200.0 3994060.0 6145460.0 4643880.0 False True 3389960.0376588376 3970756.939198124 4027928.7655623965 4370069.736278197 4133790.3389365445 4024887.2656833204 4161651.608753657 4292117.038625731 4630993.7279450465 4347503.602574306 0.7797486437162527 0.9133418398657343 0.9264923353202794 1.0051905957456893 0.9508423032677387 0.9257927384580077 0.9572508706581406 0.9872601453588725 1.0652075653722004 1.0 22.051755792350903 5.7713087123117575 0.7762556327486978 0.9826403683129296 6.668123584278583e-14 0.7396568884192893 0.03669317680729763 5.887979118612369 0.8110185169603763 0.013121953136276334 7.272613820453486 590620.765709718 -5.7713087123117575 -0.9826403683128628 GLSFHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLSFHPK 7 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1;A0A3B3ITX2;A0A3B3IS23;A0A3B3IU84 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 60.76 0.095567 364630000.0 247230.0 411840.0 456350.0 382410.0 318280.0 384230.0 435420.0 379160.0 526340.0 427800.0 False True 245898.94114983507 425547.8454374629 520600.11333469313 430823.0667906188 358811.0714066402 357669.08448013134 414357.0711340705 407454.8445354684 396630.5595946598 400497.43774199364 0.6139838060792958 1.0625482346072015 1.2998837552365852 1.0757199077716981 0.8959135255137178 0.893062104208884 1.0346060475947552 1.0173719133702843 0.9903448117692454 1.0 18.611433487186293 4.741209250924459 24.499263211071376 1.0314196839624934 0.6139836062167163 0.5743411751680577 0.10742021977136132 147.183270707784 1361308.7375647493 0.028030273891128103 0.19245130200923524 55107.31494456625 -4.741209250924459 -0.41743607774577707 GLSSAGGGS(ph)PHREDAQPEHSASAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 GLS(0.01)S(0.008)AGGGS(0.982)PHREDAQPEHSASAR;GLSS(0.001)AGGGS(0.999)PHREDAQPEHSASAR;GLSSAGGGS(1)PHREDAQPEHSASAR 266.0 1.3576e-44 5483230000.0 1383290.0 1948360.0 1814790.0 1883350.0 1895330.0 2040870.0 2037400.0 1557540.0 2045040.0 2105120.0 True False 1375842.5203379656 2013209.984791507 2070296.6575625434 2121781.9168957737 2136689.0409989553 1899789.4605912243 1938843.1783761778 1673771.543827863 1541067.294132049 1970769.4393160923 0.6981245461241871 1.0215350129897198 1.0505017057099229 1.0766261514751754 1.084190265168939 0.9639836211639755 0.9838001035012022 0.8492985076979399 0.781962244486011 1.0 20.91032757441603 1.7692291702957879 5.371845770958447 0.8620931443722 0.9942177894461378 0.1407671362108862 0.1153690128512566 0.29466201432375 19.065661324788728 0.05650186204892834 0.030436449814975425 58.77994431317891 -1.7692291702957879 0.13212464507393784 GLSSDNKPMVNLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLSSDNKPMVNLDK 14 1 F8VZQ9;H0YHG0;P82979 F8VZQ9 SARNP SAP domain-containing ribonucleoprotein 0 ; 193.47 2.3226e-07 1181330000.0 881900.0 961970.0 785650.0 808620.0 906410.0 1231220.0 1177040.0 1090440.0 1701750.0 1374990.0 False True 877151.9483883007 993988.5899268553 896262.6910077815 910991.2090903232 1021835.9407870203 1146108.659380129 1120102.0784705488 1171814.169942125 1282376.5147817228 1287236.9610118347 0.6814222827309232 0.7721877323546777 0.696268611105816 0.7077105744184327 0.7938211624872894 0.8903633861470451 0.8701599724032868 0.9103329110601506 0.9962241247126005 1.0 20.29584622584227 2.3916900805461303 0.623514807246322 0.9982411546585442 0.698331235946353 0.9093524919516095 0.03403258433858365 0.2304239561191536 0.1805300819177602 0.03059322858205539 0.024401289486174652 246.42801600805444 -2.3916900805461303 -0.2999099187121912 GLSTS(ph)LPDLDSEPWIEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 GLSTSLPDLDSEPWIEVK 18 0 A0A3B3ISF0;Q659C4;Q659C4-9;Q659C4-2;H0Y9K3;D6R9W6;D6RJB0;Q659C4-4 A0A3B3ISF0 LARP1B La-related protein 1B 1 GLS(0.046)T(0.424)S(0.53)LPDLDSEPWIEVK;GLS(0.011)T(0.084)S(0.905)LPDLDSEPWIEVK;GLST(0.002)S(0.998)LPDLDSEPWIEVK 265.73 4.7227e-31 376279000.0 523640.0 509040.0 451350.0 469310.0 393110.0 500310.0 516160.0 506230.0 633250.0 541210.0 True False 520820.780421873 525983.0886788224 514896.15679547156 528724.5978805614 443170.22835448186 465724.74730305927 491191.36887731834 544007.4531838535 477194.0226152634 506669.5144468077 1.027929973230215 1.038118682259977 1.0162367028488895 1.0435295252721766 0.8746731660742295 0.9191884137958196 0.9694512001844265 1.0736928859392936 0.941825014153997 1.0 18.950685501087815 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR ddPTM_BT-474_Trastuzumab_2h_R1 5 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR 33 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;;; 297.94 3.4730999999999985e-90 25133260000.0 3690530.0 5102990.0 5328140.0 6261710.0 5468950.0 5640210.0 5676170.0 49011.5 5110910.0 1052848.0 False True 3670660.5965364254 5272839.937327406 6078295.798976897 7054441.8439724045 6165388.365493738 5250315.558326212 5401591.9720249 52668.9870053542 3851394.7131852782 985654.3392514767 3.7240850573680726 5.34958324368733 6.166762075630755 7.157115393343342 6.255122226901413 5.326731034647901 5.480209193952278 0.05343555535437704 3.9074496604053865 1.0 19.910722268626717 1.7557559483714036 24.999999999970235 1.6701783500271417 5.716699416132581 0.6900262345334977 1.2226578448680203 3.4932212400368794 5084.284337019839 0.5551699720023807 0.3078727847391452 56.98439586805855 -1.7557559483714036 4.04652106610544 GLTLAPGLS(ph)PARPLFGSDFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLTLAPGLSPARPLFGSDFEK 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 GLTLAPGLS(1)PARPLFGSDFEK;GLTLAPGLS(1)PARPLFGSDFEK 201.16 4.2887e-22 698620000.0 1022670.0 872780.0 727720.0 748300.0 697070.0 964360.0 936260.0 878100.0 1285800.0 995020.0 True False 1017164.0583493188 901829.9546933487 830176.6505443685 843034.703275072 785837.7326424114 897696.0630592601 890969.5269394732 943628.2809014516 968931.8188372776 931516.9717205185 1.091943667403729 0.9681304603904987 0.8912093668148915 0.9050127146024842 0.8436107516011903 0.9636926543605632 0.9564715984657222 1.0130017053350766 1.0401655023500576 1.0 19.829222528943472 1.8200088771627725 2.2537117862768095 1.023104602930568 0.9367055821485618 0.21908946074958335 0.06192327484947276 0.43636764909631215 4.224617113439317 0.040487637812978435 0.018717974111217898 66.07069529989506 -1.8200088771627725 -0.08639902078200612 GLTMLDHEQVTPEDPGAQFLIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLTMLDHEQVTPEDPGAQFLIR 22 0 Q9UBE0;M0QX65;B3KNJ4;Q9UBE0-2;Q9UBE0-3;A0A590UK93;A0A590UKC5;M0QZS6;A0A590UKA0 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ;;; 184.34 3.9400999999999995e-17 1683580000.0 1004970.0 1116220.0 1032350.0 1268650.0 1224340.0 1104350.0 1176010.0 1017480.0 1196460.0 1127650.0 False True 999559.3531826634 1153372.707930761 1177695.9066529414 1429260.959922386 1380252.4417682712 1028008.8838602745 1119121.9035055323 1093409.5242587517 901608.4647426123 1055682.4115702645 0.9468371758660624 1.0925375807059132 1.1155778421099098 1.3538739911337974 1.307450447824766 0.9737861241158434 1.0600933493254903 1.0357371803063105 0.8540527481191277 1.0 20.00974445310674 2.709138258459641 24.836812108482704 0.9972494872968196 1.1672678259288676 0.36381468690461616 0.11739388179080598 825.367186471992 696730.9023231332 0.041078660598670505 0.03873443816976787 511.8447563402449 -2.709138258459641 0.17001833863204796 GLVAAYS(ph)GES(ph)DS(ph)EEEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 3 GLVAAYS(1)GES(1)DS(1)EEEQER;GLVAAY(0.001)S(0.999)GES(1)DS(1)EEEQER 128.05 1.6159000000000002e-05 222290000.0 340650.0 406280.0 381000.0 420360.0 390130.0 412800.0 377450.0 347750.0 406500.0 415630.0 True False 338815.97824977327 419802.7841985539 434641.4882886339 473577.5328995179 439810.74301832466 384264.107626677 359191.30150097585 373700.8708387199 306323.5218209316 389104.13756125484 0.8707591247251516 1.0788957085619946 1.1170312683200658 1.217097139772678 1.130316284413931 0.9875610936318664 0.923123829400118 0.9604135108429421 0.7872533140892353 1.0 18.569796795809946 2.5104139976920967 3.4448417057197984 0.920712700367741 1.0913337248841468 0.39369855862481107 0.09634734921165392 0.2519685546495979 6.182751620960673 0.035019964812579775 0.031015337061431666 323.9022744830598 -2.5104139976920967 0.17062102451640582 GLVAAYSGES(ph)DS(ph)EEEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 GLVAAYSGES(1)DS(1)EEEQER;GLVAAYSGES(1)DS(1)EEEQER 277.69 5.5473999999999994e-39 1704270000.0 851400.0 999770.0 970790.0 1038250.0 988320.0 1033010.0 1028420.0 857250.0 1005730.0 1002280.0 True False 846816.1569994324 1033046.7400762719 1107468.7937420553 1169692.343545829 1114176.6937684142 961600.4501439768 978671.395654085 921222.3480272979 757881.31759155 938313.6323049217 0.9024873217703016 1.1009610267929741 1.1802757155106147 1.2465899495380204 1.1874246045338737 1.0248177336844742 1.043010952798401 0.9817851050126598 0.8077057515724795 1.0 19.839710700101023 1.9331533225681057 1.4329968191764366 0.9124414998539104 1.125339414696516 0.39718879978017885 0.09983500943201694 0.41656791727690834 1.5910426488789031 0.07427072764336405 0.033414270536858436 85.73404657949564 -1.9331533225681057 0.21289791484260567 GLVDKLQALTGNEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLVDKLQALTGNEGR 15 1 Q6FI81-3;Q6FI81;H3BV90;H3BT65;H3BPG7;H3BUG4;H3BQ23 Q6FI81-3 CIAPIN1 Anamorsin 0 61.962 0.07752 121730000.0 313130.0 372450.0 350840.0 343080.0 377670.0 388840.0 375290.0 327380.0 466740.0 392940.0 False True 311444.14287201327 384846.77309922053 400235.2224440531 386513.8928232147 425764.03587453166 361960.4060309042 357135.78895297705 351810.7580019561 351718.18099557527 367862.2327871408 0.846632557281918 1.0461709270435153 1.088003026055802 1.0507028402855 1.1574007819413608 0.9839564210994945 0.9708411386705998 0.9563655266713049 0.9561138645050656 1.0 18.48880604156699 2.5000171597459495 24.831919076743336 0.967568323983205 1.044648220688335 0.1561120599955399 0.07427058062393271 1170.864754448356 1269869.1993311194 0.024324030386003077 0.022776704973901628 316.2402609840956 -2.5000171597459495 0.07707989670512994 GLVEDTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GLVEDTLR 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 102.3 0.011614 68007000.0 88378.0 120380.0 106690.0 120490.0 113640.0 104270.0 95675.0 96006.0 122700.0 106950.0 False True 87902.18266771891 124386.7755287534 121711.02463389587 135744.02164588208 128111.38040294887 97062.06032517833 91046.83473600712 103170.45522858996 92462.22909576459 100124.35943549841 0.8779300378380627 1.2423228096543797 1.215598534863076 1.3557542081787837 1.279522596950846 0.9694150441752104 0.909337500377826 1.0304231239057653 0.923473864073309 1.0 16.611433487186293 2.7269407578651457 23.69445775828307 0.9687784474526044 1.2070588925047454 0.4663202083961149 0.12139380429769085 325.9029435767283 664558.1470710129 0.03960238067250207 0.03766422767613619 533.2621482061878 -2.7269407578651457 0.23828044505214097 GLVETAAHLGYSVVAINHIVDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLVETAAHLGYSVVAINHIVDFK 23 0 P78346;P78346-2 P78346 RPP30 Ribonuclease P protein subunit p30 0 274.8 6.034399999999998e-52 171420000.0 480020.0 560070.0 414780.0 499500.0 488030.0 587060.0 543710.0 493030.0 704140.0 572940.0 False True 477435.6256552354 578711.5913805354 473177.41866761027 562736.6487851108 550177.7277195639 546477.9239905945 517408.67012609786 529822.402155612 530614.1319925972 536374.4786813883 0.8901162240771653 1.078932004377292 0.882177354580441 1.0491488151496893 1.0257343508813268 1.0188365511611295 0.9646407327173441 0.9877845110343733 0.9892605876719709 1.0 19.03288106821212 4.776519440172248 23.59877431941209 0.99652541307037 0.8901156570838196 0.29860566126201094 0.050144176440643784 13312.790584737675 8276133.9112378 0.011068017711604358 2.821807287950421 59774.98009554747 -4.776519440172248 -0.10640975598655045 GLVGEIIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLVGEIIKR 9 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 ; 166.09 9.7821e-05 6519100000.0 5421800.0 6070500.0 5556500.0 5533600.0 5567400.0 6706700.0 6049800.0 5611600.0 8729300.0 6647600.0 False True 5392609.631218606 6272552.92280526 6338806.902036196 6234153.192627204 6276375.389434861 6243081.614873634 5757148.061519682 6030366.087127427 6578080.981627196 6223344.476703312 0.8665131186945365 1.0079070741280924 1.0185531149312255 1.001736801805581 1.0085212883410306 1.003171468049729 0.9250890872377696 0.9689912087787703 1.0570009431828524 1.0 22.569258674311627 4.742213859474089 24.873866005610868 0.9945590389775244 0.8665130664394965 0.5983928175845739 0.0323773204705817 251.14449092371225 1709893.3180723065 0.008208954175813011 0.06057724354561593 55234.93655205711 -4.742213859474089 -0.12804597253802785 GLVGPELHDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLVGPELHDR 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 168.74 4.8456e-06 3333690000.0 2460900.0 3077140.0 2778130.0 3007960.0 2764210.0 2830560.0 2878360.0 2354090.0 2929260.0 2819390.0 False True 2447650.7878316958 3179560.744729587 3169266.556061161 3388767.4275869112 3116215.7587437145 2634890.049621529 2739122.7303970037 2529764.149626806 2207383.12307302 2639454.1163987815 0.9273321982089318 1.204628155865697 1.2007280355323036 1.2838895006860274 1.1806288805639165 0.9982708292790936 1.0377610708892369 0.9584421770810571 0.8363028966325543 1.0 21.331808156105854 GLVLDHGAR ddPTM_BT-474_Trastuzumab_2h_R1 6 GLVLDHGAR 9 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ;;;;; 193.41 3.3611e-05 6422540000.0 3492200.0 4434620.0 4056180.0 4207940.0 3879720.0 3904100.0 4026710.0 3345510.0 4660730.0 3981290.0 False True 3473398.3832198973 4582223.645915603 4627254.88705142 4740664.772550196 4373779.345097932 3634218.756262864 3831922.653773997 3595168.944355558 3512155.542082338 3727200.6636461434 0.9319053887004937 1.2294008451460812 1.2414826312369232 1.27191026198 1.173475683173782 0.9750531522785468 1.0280966869182215 0.9645761709106843 0.9423038518797008 1.0 21.82966106176205 2.748695528158959 7.648438943301918 0.982273807727844 1.1829270493356587 0.5183442472807163 0.08998464387134243 0.11768816242436993 50.866368405060946 0.028249558247274396 0.028816993006253663 560.6547786709242 -2.748695528158959 0.20065324160781473 GLVMVKPGSIKPHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLVMVKPGSIKPHQK 15 2 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 ; 164.65 8.8258e-07 1114000000.0 953720.0 1046600.0 1241330.0 898520.0 1339510.0 2316570.0 1209390.0 1047970.0 1783570.0 1528730.0 False True 948585.2774882533 1081435.4483169396 1416098.4741662194 1012272.5398726701 1510088.6586021995 2156430.9685192173 1150887.1853815494 1126174.8428838335 1344033.0721135505 1431165.1425884 0.6628063032422977 0.7556328868945617 0.9894724459296632 0.707306592195138 1.055146337529615 1.5067659939083649 0.8041609952154501 0.7868937059541834 0.9391180878558412 1.0 20.44875872402111 3.2338446717097176 24.999173688802554 0.9980226070253603 0.7921971379144758 0.2423604519004099 0.20295745639967971 220.1260794171047 1166886.099654261 0.0643605717072427 0.07932931999928941 1713.3444089656045 -3.2338446717097176 -0.2058254691108845 GLVVDMDGFEEER ddPTM_BT-474_Trastuzumab_2h_R1 12 GLVVDMDGFEEER 13 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;;;;;;;; 295.32 2.6688999999999995e-40 5806495000.0 3550048.0 4439836.0 4089368.0 4414219.0 4403308.0 4151208.0 4165376.0 4080398.0 4805938.0 4312662.0 False True 3530934.9360154117 4587613.25732246 4665115.468976144 4973058.672799933 4964043.173348719 3864244.7618525266 3963880.849598439 4384898.018601212 3621578.9761698465 4037424.218904305 0.8745513833999969 1.136272288614613 1.1554682431270957 1.2317404372606515 1.2295074543085505 0.9571064501369696 0.9817845821200765 1.0860632375636776 0.8970023410501777 1.0 21.945003750483806 2.7234566947964387 24.875128279442094 0.9974280408819837 1.1336722477201961 0.3138679374742058 0.10307565131935673 1010.6535325967111 1664474.2515439799 0.03433006807002135 0.03248191460207555 529.0012457937239 -2.7234566947964387 0.13624420683821248 GLVVDMDGFEEERK ddPTM_BT-474_Trastuzumab_2h_R1 6 GLVVDMDGFEEERK 14 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;; 265.03 1.5814e-24 3312430000.0 5152240.0 4815840.0 4404750.0 4632880.0 4588230.0 5520270.0 5439280.0 5328210.0 7804130.0 5551690.0 False True 5124500.912307681 4976132.323163244 5024900.513226657 5219402.132980116 5172513.893930158 5138666.7282178225 5176161.246332572 5725828.086302158 5880906.731484342 5197376.391159058 0.9859784103811798 0.9574315863726632 0.9668148186793266 1.0042378577504074 0.9952163369827915 0.9887039809083094 0.9959181049764697 1.1016766259303479 1.1315144967156885 1.0 22.30935211130009 1.7920219911974056 5.191990424481962 1.0872374852015692 0.9837029673648512 0.6099158626580781 0.03380968907364329 0.11640073539009954 5.992528065603094 0.015556093252810465 0.008626530878261436 61.94724422629393 -1.7920219911974056 -0.10353451783671797 GLVYETSVLDPDEGIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GLVYETSVLDPDEGIR 16 0 O75390;B4DJV2;A0A0C4DGI3;F8VPA1;F8VX68;F8VPF9;F8W1S4;H0YH82;F8VRP1;F8VZK9;F8VTT8;F8W4S1;F8VX07;F8W642 O75390 CS Citrate synthase, mitochondrial;Citrate synthase 0 ;;; 255.41 3.0535000000000004e-26 392547000.0 412380.0 553431.0 538595.0 516039.0 586440.0 794837.0 450095.0 414108.0 525281.0 556077.0 False True 410159.79189972545 571851.6162788952 614424.4944483368 581369.4844893289 661119.6578977951 739891.7890350429 428322.1853201271 445010.84175781615 395832.53595478646 520587.6897785288 0.7878783919654685 1.098473182341625 1.1802516780789198 1.1167561121867062 1.2699486962111073 1.4212625530000749 0.8227666418741985 0.8548239816180344 0.7603570805202552 1.0 18.989781671492995 2.1985731332093046 24.99816261306291 0.8473057819354398 1.149506648052758 0.4343237951659725 0.1597777507024886 144.2436668228641 90173.04026612348 0.061462498296904144 0.045393684131108725 157.96945987052356 -2.1985731332093046 0.3022008661173182 GLY(ph)LT(ph)T(ph)ISATDEDSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GLYLTTISATDEDSGK 16 0 Q5VT82;B7ZM79;Q9HC56-2;Q9HC56 Q5VT82 PCDH9 Protocadherin-9 3 GLY(0.606)LT(0.552)T(0.66)IS(0.66)AT(0.521)DEDSGK 71.513 0.046716 751080000.0 653770.0 497190.0 464580.0 439650.0 507730.0 596960.0 601150.0 557530.0 813160.0 574240.0 True False 650250.1749606753 513738.66859229864 529988.8257982498 495309.64492167043 572386.4059485156 555693.5602926878 572070.077883989 599135.7196799759 612767.6137857523 537591.5115684023 1.2095618345304517 0.9556301718631793 0.9858578760889063 0.9213494526292348 1.06472366775026 1.0336724973046423 1.0641352506013289 1.114481361381657 1.1398387076425867 1.0 19.036150832949964 2.249931396414113 1.8618397772989912 1.0961705522043381 1.0161187307028234 0.07827535846670375 0.08057186164992923 0.6533911772887455 4.558037346952558 0.039432872732462404 0.025500001875538872 177.79985252609316 -2.249931396414113 -0.08005182150151469 GLYDGPVCEVSVT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLYDGPVCEVSVTPK 15 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 GLYDGPVCEVSVT(1)PK;GLYDGPVCEVSVT(1)PK 258.96 8.5704e-24 258730000.0 411820.0 248880.0 213861.0 223400.0 195875.0 318120.0 266490.0 272480.0 465110.0 315130.0 True False 409602.8068775037 257163.82034886285 243970.76988686464 251682.417094282 220818.52020791642 296129.113173931 253598.86060933917 292813.84122540476 350489.8726546946 295018.13360363344 1.3883987464574585 0.8716881813589497 0.8269687253009586 0.8531082954799842 0.7484913469915492 1.0037658009584938 0.8596043148658027 0.99252828173203 1.1880282353273555 1.0 18.17044410842317 1.462518983837898 5.559525204271332 1.0952422817752434 0.9220859329276656 0.11427159844968982 0.1709845576731212 0.3180162233703254 21.652188837561372 0.1041475779731321 0.04252998234280719 29.008079957571347 -1.462518983837898 -0.1731563488475778 GLYGIKDDVFLSVPCILGQNGISDLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GLYGIKDDVFLSVPCILGQNGISDLVK 27 1 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 ; 220.99 2.4251e-34 882000000.0 961740.0 831330.0 812590.0 730140.0 661140.0 1346060.0 1202190.0 994990.0 1477390.0 1339600.0 False True 956562.098699358 859000.3165004035 926995.6088411033 822575.6491370598 745332.2601162066 1253010.0404844135 1144035.47688822 1069241.2062568455 1113307.0305117492 1254105.581110739 0.7627444715237994 0.6849505571449592 0.7391687133870178 0.6559062183652187 0.5943138052667616 0.9991264366869693 0.9122321869223867 0.8525926543679342 0.88772990670029 1.0 20.258227380727963 2.7371557348437676 24.999879915274224 0.9141596389917369 0.688404264694285 0.7975892897583348 0.060914077591430006 61.07741697485233 1086864.1969209716 0.019901558884829973 0.01971509133886121 545.9536009857993 -2.7371557348437676 -0.22575537429745196 GLYNEHTVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GLYNEHTVDR 10 0 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 0 ; 140.3 3.9535e-05 546270000.0 265810.0 358570.0 316320.0 333970.0 307110.0 334430.0 341450.0 272980.0 349220.0 342060.0 False True 264378.9084942676 370504.78568985796 360855.106497272 376250.56775728444 346218.63811641687 311311.64126354083 324932.7590343314 293351.1537643533 263159.4103082553 320229.4379477006 0.8255921447716671 1.1569978952102717 1.1268642533613862 1.1749405993671735 1.0811580607182054 0.9721518523052954 1.0146873476616443 0.9160655423948343 0.821783943396341 1.0 18.288746411988104 2.227006922142791 1.3874005905955233 0.9080678963337456 1.0835001477140647 0.28625194148893085 0.10254746588840473 0.49462072935240115 1.8546019493651644 0.06129897795871252 0.03542954415229973 168.65799072727907 -2.227006922142791 0.17543225138031904 GMDDDRGPR ddPTM_BT-474_Trastuzumab_2h_R1 8 GMDDDRGPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;;;;;; 117.31 0.0010689 4539817000.0 4480890.0 5575170.0 5221710.0 5527980.0 5429790.0 5182020.0 5254570.0 4844580.0 5802030.0 5053890.0 False True 4456765.386113679 5760736.163188567 5956881.380083043 6227821.701203434 6121241.571613244 4823799.154562972 5000386.374693296 5206107.1598787755 4372197.44971882 4731346.413347084 0.9419655626020503 1.217568036645464 1.2590245692597644 1.3162895203857419 1.2937631356573847 1.0195404718105356 1.056863298064004 1.1003436876218566 0.9240915941781164 1.0 22.173819363342595 2.7257326694637585 24.459398656664938 1.0354817266853702 1.2154841440851605 0.43071928331292586 0.1056347215962287 601.1862240882599 1146296.3894826325 0.03513979468100678 0.033343208433224976 531.7808201201267 -2.7257326694637585 0.18000241739979028 GMDIER ddPTM_BT-474_Trastuzumab_2h_R1 2 GMDIER 6 0 O00148;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ; 108.98 0.06966900000000001 1990130000.0 4404300.0 3499300.0 3686700.0 3498000.0 3717300.0 3610300.0 3053100.0 2781400.0 4723800.0 3542900.0 False True 4380587.738163728 3615772.0851284843 4205755.3146291515 3940846.441341981 4190676.1208366975 3360728.4587320583 2905409.889025382 2988962.191663024 3559682.7856770344 3316789.088770709 1.320731472795363 1.090142299783248 1.2680201249057765 1.1881510508714812 1.263473802125258 1.0132475622613781 0.8759706484991499 0.9011613677162733 1.07323157740981 1.0 21.66135584486319 2.61806029814958 4.254732595202475 0.9458011882331845 1.2183049689417418 0.7301230442717712 0.07696791308690679 0.11255167998728821 3.387083472909243 0.02479123973077281 0.023212462523659272 415.0116595257351 -2.61806029814958 0.2725037807085573 GMGEAVQEFVDKEEKDAIEELVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GMGEAVQEFVDKEEKDAIEELVK 23 2 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 107.75 0.00074061 13828000.0 34803.0 25566.0 20786.0 20122.0 17573.0 30227.0 28474.0 22598.0 58296.0 31317.0 False True 34615.624514976815 26416.948855026654 23712.488124849184 22669.44313684485 19810.817386668612 28137.4786367044 27096.603838756917 24284.377510318893 43929.73192637886 29318.322248167377 1.1806823126497479 0.9010389009104339 0.8087941705576758 0.7732176126913901 0.6757145657578323 0.9597233565595047 0.9242208203251011 0.8283003817463278 1.4983712763142445 1.0 14.839514926626086 1.2597901255752175 24.999556242982194 1.249185756674039 0.8719482712072144 0.4307717494431239 0.16880047186791772 174.97552656511112 206049.58525579804 0.10827539635308077 0.03945524297783819 18.18821693844239 -1.2597901255752175 -0.37723748546682456 GMGGAFVLVLYDELKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GMGGAFVLVLYDELKK 16 1 P12236 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed 0 ; 186.56 2.3733e-09 413100000.0 348880.0 343550.0 378760.0 255420.0 393490.0 837290.0 399000.0 304940.0 592520.0 494800.0 False True 347001.66884421225 354984.85406963946 432086.11575906276 287756.14581119776 443598.6191020452 779410.113068654 379698.845671982 327696.1712539446 446501.3853612261 463221.4403804072 0.7491053707687778 0.7663394288876577 0.932785225580717 0.621206448421054 0.9576383570193829 1.6825864373388804 0.8196918634857775 0.7074287644907662 0.9639048334950769 1.0 18.821342504997617 3.0280704092661974 19.48168798239016 1.0079578127739357 0.7803899337571284 0.19797299950516678 0.25152125100112926 39.26310911458208 27246.899874128754 0.07993178338990346 0.09552545675048883 1066.769055359685 -3.0280704092661974 -0.2275678790168073 GMGS(ph)LDAMDK ddPTM_BT-474_Trastuzumab_2h_R1 2 GMGSLDAMDK 10 0 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 GMGS(1)LDAMDK;GMGS(1)LDAMDK 155.48 1.3257e-05 637360000.0 1248300.0 1173320.0 959630.0 936690.0 933960.0 1288290.0 1143610.0 1085080.0 1701250.0 1294220.0 True False 1241579.2914991686 1212373.246913083 1094737.5627465122 1055274.85795901 1052894.2699853776 1199233.5446084603 1088289.215285552 1166054.1795245954 1281999.7330820656 1211621.771562512 1.0247251416570562 1.000620222719836 0.9035307786973278 0.8709606270924989 0.8689958324432889 0.9897754998756123 0.898208699140566 0.9623912403132601 1.0580857518174123 1.0 20.20850797650792 1.402073551476111 5.098705098424329 1.0272499581441075 0.9346171933085491 0.3209847064847885 0.052838892006434636 0.24979933804662674 10.237693536838696 0.03886463570113147 0.014074893406357135 25.239081816725697 -1.402073551476111 -0.09263276483555838 GMKDDKEEEEDGT(ph)GSPQLNNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GMKDDKEEEEDGTGSPQLNNR 21 2 P49407-2;P49407 P49407-2 ARRB1 Beta-arrestin-1 1 GMKDDKEEEEDGT(0.907)GS(0.093)PQLNNR 138.78 1.4315e-06 907400000.0 529830.0 310230.0 324010.0 299430.0 248610.0 416680.0 453080.0 422950.0 681130.0 472750.0 True False 526977.4541496463 320555.81801200454 369627.79165459314 337337.8072987505 280269.0098730829 387875.892359215 431162.7894663192 454512.6766965825 513274.6381743936 442578.69025836163 1.1906977578202325 0.7242911262285934 0.8351685243562397 0.7622097826305753 0.6332636795266213 0.8763998378068925 0.9742059411279421 1.0269646657213756 1.1597364479405057 1.0 18.75557446285837 2.086765834807979 2.1371005271428136 1.064907315699352 0.8165898017015006 0.34191000397357385 0.1419106146825383 0.3449362438047366 3.0397108627697795 0.07373148702650884 0.04244560967616179 122.11410613418084 -2.086765834807979 -0.2483175139978514 GMKDDKEEEEDGTGS(ph)PQLNNR ddPTM_BT-474_Trastuzumab_2h_R1 10 GMKDDKEEEEDGTGSPQLNNR 21 2 P49407-2;P49407 P49407-2 ARRB1 Beta-arrestin-1 1 GMKDDKEEEEDGT(0.002)GS(0.998)PQLNNR;GMKDDKEEEEDGT(0.318)GS(0.682)PQLNNR;GMKDDKEEEEDGT(0.003)GS(0.997)PQLNNR;GMKDDKEEEEDGTGS(1)PQLNNR;GMKDDKEEEEDGTGS(1)PQLNNR;GMKDDKEEEEDGTGS(1)PQLNNR;GMKDDKEEEEDGT(0.04)GS(0.96)PQLNNR;GMKDDKEEEEDGT(0.35)GS(0.65)PQLNNR;GMKDDKEEEEDGT(0.324)GS(0.676)PQLNNR;GMKDDKEEEEDGT(0.35)GS(0.65)PQLNNR 238.69 3.5048e-30 16301040000.0 7538870.0 4910590.0 4506963.0 4157336.0 4305099.0 6504350.0 6641220.0 5816413.0 9322380.0 6147990.0 True False 7498281.561567202 5074036.019635655 5141504.215175336 4683654.31133874 4853327.83932907 6054719.594092976 6319958.816675887 6250463.273206755 7025004.362492039 5755620.014640947 1.302775642327557 0.8815793966120935 0.8933015386868063 0.8137532184933375 0.8432328449382244 1.0519665264022278 1.098050045103637 1.0859756650555532 1.2205469340613306 1.0 22.456539917988753 2.538099404424517 5.423122694758586 1.1025806423173419 0.9331186867741768 0.21980645713581415 0.13713331703099205 0.3043100225294338 18.34828533925599 0.04547195919166397 0.04210865152165334 345.2227473429505 -2.538099404424517 -0.16946195554316512 GMKDDKEEEEDGTGSPQLNNR ddPTM_BT-474_Trastuzumab_2h_R1 3 GMKDDKEEEEDGTGSPQLNNR 21 2 P49407-2;P49407 P49407-2 ARRB1 Beta-arrestin-1 0 ;; 177.03 3.7178e-17 692820000.0 382331.0 259525.0 221503.0 201961.0 210401.0 331976.0 333527.0 283019.0 515773.0 315934.0 False True 380272.5723769677 268163.1327388243 252688.6970614102 227529.24189247238 237194.3202055691 309027.2805074465 317393.0248131303 304139.31492136186 388667.6551541136 295770.82163529407 1.2857000912884846 0.9066585109922981 0.854339504026509 0.7692754837494813 0.8019530760138542 1.044820035995635 1.0731045850239342 1.0282938433203082 1.3140838335749283 1.0 18.17412020923216 2.546391108134132 5.914007971786472 1.0926602362956348 0.910324089129679 0.2330058729732437 0.15424728557223513 0.33886887165793517 22.05213303369605 0.0517099125089639 0.04820951201202871 351.8771843159832 -2.546391108134132 -0.1823361471659558 GMLPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GMLPHK 6 0 P40429;Q8J015 P40429 RPL13A;RPL13a 60S ribosomal protein L13a 0 ; 105.82 0.032648 2149800000.0 3494500.0 4075200.0 4199400.0 3524300.0 2862600.0 3562500.0 4099200.0 3095600.0 5673300.0 3808900.0 False True 3475686.000275449 4210840.5684895795 4790639.018160858 3970476.0186453783 3227135.1420404925 3316232.7602229635 3900906.0355353085 3326609.3911382933 4275191.233325194 3565812.741036651 0.9747247689919352 1.180892232513984 1.3434914747565028 1.1134841639191304 0.9050209240943767 0.9300075469635767 1.09397389005942 0.9329175794495543 1.1989387956705524 1.0 21.765799511021985 3.466632101836839 21.808729783668458 1.0043474827261702 1.1779327531029697 0.2723535093321122 0.11624281852860704 52.07154715085459 108263.52819858045 0.03182230152824328 0.0431683483949293 2928.411487584123 -3.466632101836839 0.1735852703767995 GMPTFPWDEDPEEDGS(ph)PDPEPSPEPEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GMPTFPWDEDPEEDGSPDPEPSPEPEPK 28 0 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 1 GMPTFPWDEDPEEDGS(1)PDPEPSPEPEPK;GMPTFPWDEDPEEDGS(0.853)PDPEPS(0.147)PEPEPK 148.76 4.5176e-08 95912000.0 96347.0 82624.0 72451.0 72813.0 73793.0 90097.0 90532.0 93049.0 112905.0 88040.0 True False 95828.278457158 85374.08989273729 82651.4710446188 82031.11833431495 83190.10114462173 83868.8064555251 86152.62129417507 99992.78887324818 85081.07559948899 82421.21182516385 1.1626652452093755 1.035826676193954 1.00279368883757 0.9952670740673362 1.009328779599709 1.017563374746685 1.0452724412366865 1.2131924132025391 1.0322715926570867 1.0 16.330728055025443 1.9714143410499803 24.81108351433657 1.1114401526037585 1.0323494242224214 0.024693874885797884 0.07002257853027032 994.9340701056324 863557.5308611962 0.0282584280939344 0.01828200831899958 93.62985289479853 -1.9714143410499803 -0.07909072838133713 GMPTFPWDEDPEEDGS(ph)PDPEPSPEPEPKPSLEPNTSLER ddPTM_BT-474_Trastuzumab_2h_R1 3 GMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLER 39 1 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 1 GMPTFPWDEDPEEDGS(0.919)PDPEPS(0.081)PEPEPKPSLEPNTSLER;GMPTFPWDEDPEEDGS(0.991)PDPEPS(0.009)PEPEPKPSLEPNTSLER;GMPTFPWDEDPEEDGS(0.997)PDPEPS(0.003)PEPEPKPSLEPNTSLER 257.66 9.093899999999997e-63 160844000.0 108098.0 110887.0 97805.0 100250.0 101388.0 138587.0 127244.0 118912.0 168709.0 136587.0 True False 107516.01237881689 114577.80676239294 111575.09386370023 112941.63972113587 114299.1608262423 129006.80688870707 121088.72160071602 127785.81726290112 127132.92753477866 127869.90072198602 0.8408234601869096 0.8960498609559987 0.8725672987444179 0.883254300530763 0.8938707247044075 1.0088911163635992 0.9469681364966912 0.9993424296209652 0.9942365389896588 1.0 16.964317182835266 2.8279818634718605 4.586172558928165 0.986996748545912 0.8764002211260374 0.8811053538970142 0.020720494983599923 0.07163339017593572 2.6221323186294585 0.006186843020483263 0.00655972071823163 672.9485527607397 -2.8279818634718605 -0.11059652741987458 GMPVTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GMPVTAR 7 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 77.374 0.088917 70319000.0 143340.0 225070.0 200580.0 222800.0 215920.0 167610.0 181950.0 168120.0 172870.0 200760.0 False True 142568.27336657117 232561.31889231174 228819.92052738596 251006.4571558014 243416.1321418933 156023.5152115003 173148.3833835014 180665.9680960619 130268.50483932215 187947.32492071687 0.758554416386143 1.2373749878611717 1.2174683551570136 1.3355149229268637 1.2951295382606547 0.8301449104280509 0.9212601640195826 0.9612585237500639 0.6931117795599071 1.0 17.519968855893396 2.7323918562367853 24.87161357355058 0.8890201408096547 1.1845824979784942 0.42235856433422303 0.16756802764836365 454.4190735911955 1832152.1133055114 0.05369265033243884 0.051797254000802935 539.9976330938362 -2.7323918562367853 0.2955623571688395 GMWSEGNGSHTIR ddPTM_BT-474_Trastuzumab_2h_R1 3 GMWSEGNGSHTIR 13 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;; 187.74 6.7008e-06 2467960000.0 962500.0 1180970.0 1222760.0 1254380.0 1202250.0 1083760.0 1141810.0 1020690.0 1288580.0 1120500.0 False True 957318.0069438037 1220277.8725385598 1394913.979579552 1413184.3793855202 1355349.4112059597 1008842.2220966276 1086576.2881622203 1096859.0707588017 971026.7250873685 1048988.7306916853 0.9126103826802453 1.1632897826594661 1.329770224185125 1.3471873796524874 1.2920533572484285 0.9617283699810714 1.0358321842463936 1.0456347515149675 0.9256788911803562 1.0 20.000567748419 2.7338551400252356 24.690105996312745 1.004136534943429 1.2208322666737073 0.44664175527779504 0.11912820919488047 337.5399853708711 1771098.8446417043 0.04053498620041129 0.03937020189742981 541.8201348412238 -2.7338551400252356 0.21669573173027823 GNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 13 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK 201.66 7.0401e-22 29640470000.0 80998305.0 51235246.0 47697358.0 38356598.0 42292964.0 72051147.0 64187069.0 66942719.0 105032670.0 65766916.0 True False 80562219.12563775 52940580.190749764 54412731.41353215 43212539.37400945 47678722.275362775 67070420.79804644 61082095.25405476 71938324.62001927 79148775.8441715 61569615.11499038 1.3084736517383757 0.8598491332433276 0.8837594861021676 0.7018484571213192 0.7743872068440852 1.0893428629167567 0.9920818108083816 1.168406274518101 1.285516820209927 1.0 25.875715214193313 2.2028408338924463 1.6964198402293786 1.1572777158286105 0.8986020683660318 0.24131820455042152 0.17104594317479355 0.4825164530675039 2.737720042904879 0.09451338397564266 0.05652481626623603 159.52943750561602 -2.2028408338924463 -0.25867564746257865 GNAEGS(ph)S(ph)DEEGKLVIDEPAKEK ddPTM_BT-474_Trastuzumab_2h_R1 8 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK 167.87 4.9519e-11 8433770000.0 3256565.0 2212437.0 2007752.0 1903747.0 2064971.0 3408905.0 3475419.0 3293794.0 6625250.0 3339307.0 True False 3239032.015878387 2286076.628098591 2290426.029906773 2144761.1750044227 2327932.8168079737 3173255.4210492224 3307299.705580136 3539593.6338270293 4992545.91130166 3126189.568335444 1.036095842902779 0.7312661558511387 0.7326574348229056 0.6860624182001899 0.7446550396006515 1.015055341873858 1.0579331909616487 1.1322389626268583 1.5970067720365297 1.0 21.575973833587938 2.1840721087302173 1.3396525715773806 1.2662079511451227 0.7768511115547388 0.5697133233566217 0.17094176343034484 0.3024762288019877 1.0433795517971338 0.10575864184357592 0.05821298814034562 152.78197109976838 -2.1840721087302173 -0.4893568395903839 GNAEGS(ph)SDEEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GNAEGSSDEEGK 12 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 GNAEGS(0.619)S(0.381)DEEGK 129.17 0.00021437 0.0 875030.0 603660.0 529100.0 466530.0 499410.0 566280.0 626210.0 590650.0 834080.0 642750.0 True False 870318.935704973 623752.4581798235 603592.6809803568 525592.6501656012 563006.9032650184 527134.3964797355 595917.8299454928 634727.3022599274 628532.1600993907 601729.144714039 1.4463632738257615 1.0366000444872097 1.0030969685990585 0.8734704888116722 0.935648386339301 0.8760326819972243 0.9903423079643118 1.054838888619181 1.0445433225576755 1.0 19.198754709742264 4.775376632648283 2.6586272772958894 0.9718075397220802 1.5677294029624234 0.8527146600819551 0.05875484929727108 0.2180324475422763 1.8719314612551439 0.016547648727910706 0.299270773606697 59617.89429074139 -4.775376632648283 0.5959218632403431 GNAEGS(ph)SDEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 GNAEGS(0.574)S(0.426)DEEGKLVIDEPAK 190.5 1.0922e-17 2383500000.0 859300.0 558790.0 512670.0 436560.0 467630.0 760540.0 663890.0 720380.0 1032600.0 706470.0 True False 854673.6242772042 577388.9873543117 584849.4797924769 491828.4512384949 527179.9086398362 707965.6599185887 631775.1043939142 774138.4136155192 778129.5661311046 661382.4797606039 1.2922531975545597 0.8730031487427748 0.8842832970177421 0.7436369518232758 0.7970878043679899 1.0704330422766055 0.9552341099549441 1.1704852143886981 1.1765197747795781 1.0 19.33512530300594 2.124013838915607 1.7508643670876738 1.1247154709818836 0.9124217735253882 0.19035308902130943 0.15293428610935408 0.5175589238809132 3.0600594007585267 0.08786295141708411 0.049113584670017175 133.04968139571608 -2.124013838915607 -0.2122936974564954 GNAEGS(ph)SDEEGKLVIDEPAKEK ddPTM_BT-474_Trastuzumab_2h_R1 5 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 GNAEGS(0.578)S(0.422)DEEGKLVIDEPAKEK;GNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK;GNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK;GNAEGS(0.835)S(0.165)DEEGKLVIDEPAKEK;GNAEGS(0.618)S(0.382)DEEGKLVIDEPAKEK 247.51 2.4083e-31 3754810000.0 3230410.0 2167860.0 1848100.0 1824240.0 1875420.0 3187290.0 3248740.0 2972170.0 5872320.0 3135600.0 True False 3213017.831492288 2240015.9096009554 2108296.4160268363 2055188.5969564593 2114243.620514773 2966960.144373624 3091586.0348080085 3193968.4177734493 4425165.421056562 2935483.323477777 1.0945447401437476 0.763082485151755 0.7182110009499418 0.7001193229473368 0.7202369720874275 1.0107228750523287 1.0531778566349648 1.0880553782160258 1.5074742158009955 1.0 21.485166630062423 2.2077389293040235 1.4165065378294635 1.212727699405771 0.7906408732911689 0.5213071985644253 0.1650435612574196 0.3261486367009201 1.2711018294914682 0.0988783844544252 0.05637823109047808 161.3388397000137 -2.2077389293040235 -0.422086826114602 GNAEGSS(ph)DEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 GNAEGS(0.345)S(0.655)DEEGKLVIDEPAK;GNAEGS(0.052)S(0.948)DEEGKLVIDEPAK 275.69 9.7252e-45 3904300000.0 3266440.0 2010180.0 1694070.0 1496040.0 1632560.0 2621040.0 2466180.0 2469020.0 3645140.0 2456690.0 True False 3248853.8499755985 2077087.6261205303 1932580.3308795947 1685438.510607563 1840456.8390587682 2439853.6740645026 2346881.451677512 2653270.8098295196 2746844.089373554 2299901.9409218715 1.4126053777203031 0.9031200805404641 0.8402881429392407 0.732830596217501 0.8002327431060198 1.060851173979415 1.0204267451232332 1.1536451892231574 1.1943309584201378 1.0 21.133140920771414 2.3433976237591474 2.282929032667321 1.1165606636164336 0.921793831410359 0.12876730804951886 0.18207599324984197 0.5394049856009281 5.767413512171315 0.0792057946562664 0.059396964515359134 220.49443035910056 -2.3433976237591474 -0.1947668322060746 GNAEGSS(ph)DEEGKLVIDEPAKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 GNAEGS(0.398)S(0.602)DEEGKLVIDEPAKEK 221.45 4.8731000000000005e-26 272800000.0 415620.0 273050.0 232820.0 214700.0 245530.0 411530.0 442160.0 382520.0 786790.0 395440.0 True False 413382.34809972293 282138.3041877891 265599.0322922824 241880.9979863128 276796.79012967314 383081.8997374186 420771.03158477094 411065.5847972028 592896.1469458556 370202.68064678356 1.1166379113665517 0.7621184797875137 0.7174422179446474 0.6533745178822609 0.7476898590957787 1.034789642981876 1.1365963932234069 1.1103798170208476 1.6015447157486888 1.0 18.49795581627366 2.3805690807887974 1.7188882650341868 1.2343965792704865 0.7846589841646194 0.5210499863134096 0.1865133711268512 0.2863553943506174 1.7199957618397366 0.0880340438242281 0.06315740251896963 240.19783067254573 -2.3805690807887974 -0.4497375951058671 GNAGQSNYGFANSAMER ddPTM_BT-474_Trastuzumab_2h_R1 3 GNAGQSNYGFANSAMER 17 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 365.28 3.579099999999998e-76 637980000.0 118504.0 142224.0 151952.0 151624.0 144746.0 151916.0 144576.0 141894.0 157248.0 174692.0 False True 117865.98763103229 146957.8398637766 173345.52080953916 170819.58285364092 163178.54512324237 141414.40449179834 137582.30654604634 152482.8508031323 118496.33741524692 163543.00699865445 0.7207033170913999 0.8985883441961275 1.0599384467167425 1.044493347581938 0.9977714615739266 0.8646924566634746 0.8412607122185194 0.9323715737010196 0.7245576536098657 1.0 17.31931054639768 2.7204545610847766 23.514721166976653 0.8711926085518029 0.9537502708069837 0.09258151627601852 0.11026151411743162 891.6788705976287 1158039.2903238866 0.036600491682054266 0.034587835147943516 525.3570457192395 -2.7204545610847766 0.0825576622551808 GNAMVEEGHFAAEDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNAMVEEGHFAAEDVK 16 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 123.03 9.0122e-05 946200000.0 635650.0 661800.0 560450.0 540410.0 582110.0 737380.0 701410.0 600210.0 906830.0 724690.0 False True 632227.7310273538 683827.612933452 639356.4884812728 608825.8505905141 656238.2580637152 686406.6562058132 667480.1186535965 645000.7180046238 683353.8973994466 678439.6637616763 0.931884977835618 1.0079416777343202 0.9423925554946141 0.8973912981661752 0.9672757845924527 1.011743111244356 0.9838459546316712 0.9507119828878415 1.007243435047006 1.0 19.371860991389116 3.002624349380705 24.999683753323623 0.9846100645680199 0.9471145534159947 0.3301238048338476 0.030102431798086884 122.16796640955012 1163754.6525339491 0.009157045977331626 0.010885575231595997 1006.0610822361025 -3.002624349380705 -0.03749551115202521 GNDPLTSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 7 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 GNDPLTSS(1)PGR;GNDPLTS(0.003)S(0.997)PGR;GNDPLTSS(1)PGR;GNDPLTSS(1)PGR;GNDPLT(0.029)S(0.177)S(0.794)PGR;GNDPLTSS(1)PGR;GNDPLTS(0.006)S(0.994)PGR 182.37 6.1006e-06 26785340000.0 6711200.0 8441400.0 7516600.0 7754650.0 7473090.0 8398240.0 8675620.0 7050810.0 8654160.0 8388190.0 True False 6675067.64488441 8722366.896065952 8574871.94454159 8736387.894897828 8424743.715025296 7817689.436130499 8255947.116513181 7576977.245487713 6521458.2278027795 7852848.532709231 0.8500186419082139 1.1107264911242007 1.0919441408840291 1.1125119577320788 1.07282646289865 0.9955227588521178 1.0513315113776784 0.964869908534153 0.8304576614000828 1.0 22.904784639707312 1.582338162672836 3.7577913223784893 0.9102444330697413 1.0474791950791398 0.2766857008899938 0.08208837846328591 0.20704239833668142 6.711834739696586 0.049016103717321374 0.020815138273715863 38.22417869236591 -1.582338162672836 0.13723476200939844 GNDS(ph)DGEGESDDPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNDSDGEGESDDPEK 15 0 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 GNDS(1)DGEGESDDPEK;GNDS(1)DGEGESDDPEK 358.18 1.0725e-82 2755600000.0 5109100.0 3520400.0 3149100.0 2618200.0 2763400.0 4061600.0 3587200.0 3591100.0 4351700.0 3181100.0 True False 5081593.173274367 3637574.3858732586 3592465.9075321127 2949663.851549903 3115302.6100449567 3780831.151977987 3413673.4315652447 3859086.117236312 3279281.8447924913 2978079.47452327 1.7063322912454602 1.2214497353048512 1.2063029003304868 0.9904584067629976 1.0460777278429259 1.269553477105651 1.1462667335671775 1.2958304673363605 1.1011398026298267 1.0 21.50595082424173 4.797183564000503 2.4740580522446827 1.1480216236529908 1.8844316945206872 0.7456782479880879 0.09973560084191788 0.35367740788105745 2.349779743429151 0.02583747821473545 0.5838861753953025 62687.877261989684 -4.797183564000503 0.7364100708676964 GNDS(ph)DGEGESDDPEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNDSDGEGESDDPEKK 16 1 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 GNDS(1)DGEGESDDPEKK;GNDS(1)DGEGESDDPEKK 153.82 2.5388e-07 1185320000.0 1323900.0 667950.0 629230.0 500900.0 540550.0 936500.0 905160.0 840970.0 1314520.0 724830.0 True False 1316772.269499119 690182.311965699 717820.1146347952 564313.8886415659 609385.8384091338 871761.959283875 861373.9527530101 903727.4517591329 990574.1596655606 678570.7288418161 1.9405085034342473 1.0171118243542594 1.0578412597607474 0.8316213250234598 0.8980432142265156 1.2847031594949543 1.2693945025055862 1.3318102496133515 1.4597950037666254 1.0 19.37213967303042 2.5279812441032194 24.887717128803843 1.2938328688116298 1.1162348907712465 0.02873598499026231 0.3061364690387026 983.6750643268311 481347.9241794862 0.09913524644234328 0.09346456704291971 337.27274253010415 -2.5279812441032194 -0.17759797804038335 GNDS(ph)DGEGESDDPEKKK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNDSDGEGESDDPEKKK 17 2 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 GNDS(1)DGEGESDDPEKKK;GNDS(1)DGEGESDDPEKKK;GNDS(1)DGEGESDDPEKKK 146.06 2.3543000000000004e-07 1540400000.0 1657190.0 998480.0 845310.0 836860.0 959420.0 1636390.0 1646910.0 1370550.0 3068100.0 1433300.0 True False 1648267.8731711158 1031713.8032060941 964322.3004337653 942806.3901948115 1081596.450072134 1523270.2109477208 1567242.671492839 1472827.4005118818 2312007.8654337004 1341825.5668901345 1.2283771556024257 0.7688881689720914 0.7186644257112458 0.7026296215087742 0.8060633786989785 1.135222228980261 1.16799285254725 1.0976295554759492 1.723031608938632 1.0 20.35576570722668 2.607066827809196 2.8194273272171335 1.233516600588082 0.8242163858329786 0.41706460586525984 0.22615992910567795 0.272404136819622 4.195380837034153 0.07935709153207064 0.07325427823053397 404.638151297565 -2.607066827809196 -0.40930021475510336 GNDTFVTLDEILR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNDTFVTLDEILR 13 0 F8W7U8;P49959-2;P49959;P49959-3;F5GXT0;F5H742;F5H256 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 ; 108.68 0.0027842 53052000.0 63974.0 74845.0 77433.0 76628.0 76567.0 75313.0 68956.0 69334.0 80449.0 74064.0 False True 63629.571092179605 77336.17058024206 88334.89334029851 86329.09694315416 86317.3536018356 70106.7895777325 65620.33484249924 74508.05515091817 60623.42191137058 69337.17211061947 0.917683389086967 1.1153637828906708 1.273990424636447 1.2450622705729335 1.2448929048350312 1.0110996373761132 0.9463947381328093 1.0745759148072718 0.8743278686741491 1.0 16.081341377538415 2.6362209879963525 6.2302266118023 0.9882382688929924 1.1676524794345817 0.41599981697714983 0.10535406938502712 0.2558974519459038 13.207692822005544 0.035998060509620615 0.033874228025378324 432.7339689615903 -2.6362209879963525 0.17941421054158935 GNDVAFHFNPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GNDVAFHFNPR 11 0 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 ;;; 142.08 3.7822e-05 2216910000.0 2908060.0 3433340.0 3126400.0 3102880.0 2996100.0 2959920.0 2475710.0 2421050.0 2986370.0 2878150.0 False True 2892403.3280758406 3547616.6464021425 3566569.9448440564 3495704.289854543 3377635.575724 2755307.6973022195 2355950.4491693787 2601721.044842798 2250419.128807811 2694464.002891812 1.0734614843514672 1.3166316724197062 1.3236658352148196 1.297365370664743 1.2535463721537863 1.0225810010247334 0.8743670157184782 0.9655801829419586 0.8352010367897165 1.0 21.36156688227326 2.63103527962639 3.0103627565033224 0.92079891364566 1.2653012699809998 0.8017999379551628 0.07903203763347087 0.10723896787136122 1.8709760515613378 0.026775907515517106 0.02507789737026411 427.5976203520117 -2.63103527962639 0.34450235633533977 GNEFEDYCLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GNEFEDYCLKR 11 1 P26196;Q8IV96 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 134.56 0.00022171 1246000000.0 1239100.0 1499300.0 1355800.0 1557200.0 1384700.0 1570100.0 1605300.0 1426000.0 2258600.0 1683600.0 False True 1232428.8232769512 1549203.2941540116 1546684.8551751424 1754341.360336687 1561033.3372400864 1461562.6826178455 1527645.506158478 1532415.3610812773 1701998.2936894349 1576151.2065975203 0.7819229640647412 0.9829027111544191 0.9813048701805789 1.1130539715944072 0.9904083635541102 0.9272985209159976 0.969225223927752 0.9722514912698911 1.0798445520741529 1.0 20.5879745143623 4.749386675671174 3.6822517609690606 0.9998651807663523 0.7556446206268028 0.6217393645202529 0.05159595670973487 0.19874324757489326 4.93819157660787 0.01293160855025278 0.1347590200550475 56154.77295837333 -4.749386675671174 -0.24422056013954951 GNEFFCEVDEDYIQDK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNEFFCEVDEDYIQDK 16 0 P67870;Q5SRQ3;Q5SRQ6;N0E472;A0A0G2JM12;N0E644;A0A0G2JM58 P67870 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-562 Casein kinase II subunit beta 0 ;; 184.76 4.1178e-09 97566000.0 221340.0 200115.0 156337.0 151517.0 119528.0 174682.0 167924.0 154444.0 236489.0 191462.0 False True 220148.33003318583 206775.70680292792 178347.89069443595 170699.03666461198 134749.1823020387 162606.64449719785 159800.87458802483 165969.395530741 178209.4547402467 179242.73124113493 1.2282134316343387 1.1536072083433773 0.9950076606147272 0.9523344990485046 0.7517692983642437 0.90718682632906 0.8915333608314917 0.9259477044425454 0.9942353227172255 1.0 17.45155508951465 4.212725139678591 1.8383138345215264 0.9067732884360981 1.231584925497851 0.735784327067112 0.06531919896782466 0.18943320480231687 1.1806889852927311 0.017967674913895962 0.07481059493848831 16320.187338144451 -4.212725139678591 0.324811637061753 GNEFFCEVDEDYIQDKFNLTGLNEQVPHYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNEFFCEVDEDYIQDKFNLTGLNEQVPHYR 30 1 P67870;Q5SRQ3;Q5SRQ6;N0E472;A0A0G2JM12;N0E644;A0A0G2JM58 P67870 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-562 Casein kinase II subunit beta 0 ; 216.52 1.0326e-34 899190000.0 360890.0 431380.0 407920.0 422690.0 361200.0 425920.0 434400.0 412280.0 614000.0 479420.0 False True 358947.0083386484 445738.2225252829 465351.5902957986 476202.51066061767 407196.6789998694 396477.15290783544 413386.412430849 443046.42711542035 462687.9271784797 448823.00514788757 0.7997518046571055 0.9931269507417779 1.036826510580635 1.0610029013635531 0.9072544729869578 0.8833708351852327 0.9210455072253656 0.9871294965583063 1.0308917365455088 1.0 18.77578709994272 1.5181613919107209 4.862835539291462 1.0141281825854234 0.9496524547034593 0.140733801756316 0.07202495827107343 0.3665053090497803 19.02608644593407 0.04572613616487933 0.01961978870057017 32.97322240422343 -1.5181613919107209 -0.0644757278819641 GNEFLFSHLWPLIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNEFLFSHLWPLIEK 15 0 H7C5G1;Q2TAA2-2;Q2TAA2 H7C5G1 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog 0 ; 141.55 4.7432e-06 420600000.0 1178080.0 1343170.0 1188140.0 1129700.0 1150220.0 1396510.0 1361760.0 1156940.0 1642920.0 1416390.0 False True 1171737.3481769925 1387876.6014865886 1355419.7845019868 1272719.9041692505 1296693.6991119315 1299972.550730938 1295886.4663716247 1243276.737622283 1238044.3800001107 1325994.7775675117 0.8836666388132397 1.0466682259734061 1.0221908920248195 0.9598227125026902 0.9779025687345979 0.9803753172510148 0.9772937935312841 0.9376181253918874 0.9336721387932291 1.0 20.338643662729208 1.8716022766470843 6.076388818441018 0.9511010986806031 0.9823248960909923 0.037766613889134715 0.043442933650680735 0.571101998906624 25.38344588061968 0.01859821311037661 0.01123765721392781 74.40502666223897 -1.8716022766470843 0.031223797410389165 GNEPGS(ph)DRSPS(ph)PSKNDSFFTPDSNHNSLSQSTTGHLSLPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQK 41 2 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 2 GNEPGS(0.518)DRS(0.482)PS(0.959)PS(0.04)KNDS(0.001)FFT(0.001)PDSNHNSLSQSTTGHLSLPQK 77.127 0.00074611 272300000.0 36454.0 63259.0 56333.0 65939.0 68136.0 49349.0 55909.0 43571.0 29606.0 44255.0 True False 36257.73571442014 65364.537574126945 64264.19674478629 74286.87063912208 76812.71572628761 45937.61978505064 53204.468076879275 46822.48926905497 22309.99800007502 41430.60801138831 0.8751437030432605 1.577687142707627 1.5511284972482557 1.793043216230434 1.854008893742848 1.1087845916338825 1.2841826521651483 1.1301424602840624 0.5384907214961103 1.0 15.338409372171137 1.8165399776394444 1.2824384005544043 0.8055314387546847 1.5172869944133378 0.44373072450328677 0.2981471715554141 0.4002779106075164 1.2296275982550322 0.23967579266069153 0.097998597605426 65.54506185422623 -1.8165399776394444 0.7117555556586531 GNEPGSDRS(ph)PS(ph)PSKNDSFFTPDSNHNSLSQSTTGHLSLPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 GNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQK 41 2 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 2 GNEPGS(0.008)DRS(0.99)PS(0.52)PS(0.399)KNDS(0.07)FFT(0.011)PDSNHNSLSQSTTGHLSLPQK;GNEPGS(0.172)DRS(0.825)PS(0.855)PS(0.033)KNDS(0.025)FFT(0.02)PDS(0.017)NHNS(0.013)LS(0.011)QS(0.01)T(0.01)T(0.009)GHLSLPQK;GNEPGS(0.051)DRS(0.947)PS(0.824)PS(0.168)KNDS(0.008)FFT(0.002)PDSNHNSLSQSTTGHLSLPQK;GNEPGS(0.054)DRS(0.788)PS(0.655)PS(0.206)KNDS(0.245)FFT(0.027)PDS(0.012)NHNS(0.003)LS(0.002)QS(0.002)T(0.002)T(0.002)GHLS(0.001)LPQK 157.22 2.8422e-14 1977090000.0 138567.0 385068.0 525337.0 604745.0 612728.0 574335.0 635704.0 552635.0 366551.0 566418.0 True False 137820.9706682409 397884.7556014789 599299.88328894 681305.6549940978 690755.2788766106 534632.5732891656 604952.5688948906 593875.429923669 276219.4175817573 530268.7183051524 0.259907789976269 0.750345517029932 1.1301814770526637 1.2848309384941476 1.3026513822735124 1.0082295161554335 1.140841516785005 1.1199518459656015 0.5209046056207336 1.0 19.016364117735087 4.587659228835594 2.4701350796329664 1.0871102807022992 0.2014239828200804 0.585554079328835 0.20764256492008823 0.25788220105664555 2.419168271756154 0.05228087963794021 0.4151031837112235 38695.39006106432 -4.587659228835594 -0.8856862978822189 GNFGGSFAGSFGGAGGHAPGVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNFGGSFAGSFGGAGGHAPGVAR 23 0 A0A087X0X3;P52272-2;P52272;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 284.45 3.3571e-52 4403100000.0 963700.0 1298920.0 1210480.0 1342830.0 1273790.0 1172340.0 1201050.0 1099570.0 1272090.0 1325220.0 False True 958511.5462771356 1342153.7669862797 1380905.0623192252 1512832.1403165383 1435999.6061551599 1091298.8951915195 1142950.6230434421 1181625.4969033236 958600.4646326897 1240643.3250220758 0.7725923534550755 1.0818208101529887 1.1130556498134978 1.2193932855678882 1.1574636941923724 0.8796233963311745 0.9212564159188175 0.9524296573169391 0.7726640246225743 1.0 20.242656981180353 2.7283858479230143 24.846602209083265 0.9078266179962093 1.0804026188504738 0.3052894884601365 0.12280158286957557 803.44556103711 1961996.7599227333 0.0404096734458149 0.0384983564245938 535.0395028984032 -2.7283858479230143 0.1725760008542645 GNFNYIEFTR ddPTM_BT-474_Trastuzumab_2h_R1 4 GNFNYIEFTR 10 0 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 ;;; 264.3 3.6507e-17 3640120000.0 1553760.0 1959800.0 1866050.0 1754510.0 1590940.0 1723860.0 1779790.0 1516750.0 2129030.0 1689230.0 False True 1545394.728798965 2025030.7582758823 2128773.620002636 1976630.786106035 1793536.7787598334 1604693.6157299504 1693694.7582419452 1629937.5869004403 1604359.0840403878 1581421.8951774354 0.9772184978035681 1.2805126604426291 1.3461136629601225 1.2499073094496755 1.1341292189195338 1.0147156939103237 1.0709948834064378 1.0306785253643915 1.0145041553635368 1.0 20.592790873694973 2.9765782481616334 3.2617713487641042 1.0325275433589236 1.2268411645877475 0.4799597282238074 0.0914134828107767 0.21253503716670313 4.65383209192011 0.028983674728120936 0.03292827362534504 947.4978827100794 -2.9765782481616334 0.1943136212288239 GNFTLPEVAECFDEITYVELQKEEAQK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNFTLPEVAECFDEITYVELQKEEAQK 27 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;; 316.38 3.106999999999999e-82 280183000.0 250704.0 264507.0 233097.0 243531.0 209239.0 299834.0 312776.0 271714.0 550170.0 324052.0 False True 249354.2375198331 273310.95559714164 265915.0314845555 274361.9996302039 235884.34639328255 279107.18131331675 297645.8299596483 291990.6784157355 414587.97540029994 303370.7239251248 0.8219456191869604 0.900914076549449 0.8765349142595126 0.9043786298176861 0.777544857794193 0.920020157852158 0.9811290493314396 0.9624879903962057 1.3666050897601603 1.0 18.210722342863097 1.4515091048380968 3.9050800277911675 1.1847639694459566 0.8856505910016053 0.5793796447296949 0.09922996464429301 0.13256772335735315 3.8099201429205554 0.06535428500462652 0.02390528308501658 28.281934025517156 -1.4515091048380968 -0.2991133784443514 GNFWSADILSTIGYDNIIQHLNNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNFWSADILSTIGYDNIIQHLNNGR 25 0 Q9H939;Q9H939-2 Q9H939 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 0 ; 193.77 2.8925e-18 96244000.0 56441.0 90178.0 72726.0 82159.0 77063.0 69650.0 73602.0 81287.0 73526.0 83432.0 False True 56137.1279271846 93179.52021624793 82965.18865427593 92560.32097604788 86876.51626181327 64835.25943846438 70041.59007305566 87353.04870702232 55406.50249792325 78107.29833027108 0.71871808559826 1.1929681631317606 1.0621950883957554 1.1850406166228313 1.1122714281380235 0.8300794013424093 0.8967355365037701 1.1183724258091254 0.7093639606332413 1.0 16.25316973935009 2.7557406065435748 24.350274104592874 0.9335937884234708 1.069654670708887 0.1575781152103577 0.1595161986423434 1140.43758563119 1616411.2842148573 0.04778278211496269 0.050557935976284996 569.8238288059216 -2.7557406065435748 0.13606088228541613 GNHECASINR ddPTM_BT-474_Trastuzumab_2h_R1 5 GNHECASINR 10 0 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;A0A087WYY5;P62140;E7ETD8;C9JP48;P62136;P62136-2;P62136-3;E9PMD7 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 ;;;; 164.33 6.1892e-06 5925720000.0 2067003.0 2788685.0 2831694.0 2858672.0 2562444.0 2222506.0 2552975.0 1812088.0 2685136.0 2385741.0 False True 2055874.4855136233 2881504.6944293207 3230371.9016745263 3220579.5820937543 2888756.0546044856 2068869.3914363787 2429477.8459384167 1947315.2081564192 2023420.2117790119 2233480.9668443706 0.9204799664885065 1.290140698400724 1.446339570217443 1.4419552393338864 1.2933873614718718 0.9262981964692686 1.0877539956702498 0.8718745478757011 0.9059491626820764 1.0 21.09086252973824 2.7420142508134377 24.044487018862323 0.9548302706819393 1.297519137849871 0.5417908736462203 0.14664019906102893 136.09210447335792 947485.6729214308 0.04742426481410796 0.048437621393543066 552.0955552872954 -2.7420142508134377 0.3426888671679317 GNIETTS(ph)EDGQVFSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNIETTSEDGQVFSPK 16 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 GNIETT(0.043)S(0.957)EDGQVFSPK;GNIETT(0.009)S(0.991)EDGQVFSPK;GNIETT(0.039)S(0.961)EDGQVFSPK 264.01 5.8241e-27 561100000.0 1418720.0 1428400.0 1262980.0 1343610.0 1328480.0 1625650.0 1543290.0 1446490.0 1916400.0 1589560.0 True False 1411081.769154609 1475943.4305139657 1440796.605981047 1513710.8882365641 1497654.0534821348 1513272.6418684805 1468635.1667596798 1554434.4289273904 1444128.8984443601 1488112.9199092153 0.9482356817657992 0.9918222002964721 0.9682038148482341 1.017201630323128 1.006411565577632 1.0169071322630543 0.9869111054081005 1.0445675245009103 0.970443088776127 1.0 20.505052573466365 4.989390921914161 0.7418396165020301 1.0096537221921893 0.8975411213488518 0.3736804587149998 0.02118901630857696 3.609130767816668 1.172369331784573 0.007496272875387937 0.3664662412563703 97586.7651192024 -4.989390921914161 -0.11211260084333752 GNIETTSEDGQVFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 GNIETTSEDGQVFSPK 16 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK 279.93 2.0402e-35 2273730000.0 2230930.0 1746700.0 1484720.0 1490810.0 1482810.0 2155160.0 2112610.0 1990580.0 3009070.0 2224440.0 True False 2218918.9207596267 1804837.8535975546 1693755.6705824162 1679546.3931438082 1671637.064196558 2006178.861900946 2010414.9833460804 2139127.1875604303 2267525.017972224 2082474.3347611025 1.0655204166125662 0.8666795184319053 0.8133380768780138 0.8065148103429004 0.8027167664413617 0.9633630669119824 0.9653972439361235 1.0272045863200647 1.088860967034367 1.0 20.9898672846792 2.248012296845406 1.7575212795235922 1.0370696342942687 0.8661361306731601 0.4598999232377985 0.07651399112553348 0.32137473176967357 1.9867708250991116 0.040871000887298115 0.025878927247310755 177.0159078835365 -2.248012296845406 -0.1709335036211086 GNIIISTPEKWDILSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNIIISTPEKWDILSR 16 1 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 214.28 1.5666e-14 1111580000.0 447590.0 594920.0 584020.0 580960.0 602220.0 651660.0 640440.0 524040.0 797510.0 664900.0 False True 445180.22517192416 614721.5525632657 666244.93960716 654509.4764328297 678909.1473624062 606612.2780426372 609459.4704816143 563146.5258212012 600974.3465864965 622465.5127504705 0.7151885784078528 0.9875592140792075 1.0703322930506505 1.0514790988833542 1.0906775290449906 0.9745315453095816 0.9791056018326433 0.9047031751732586 0.9654741255157869 1.0 19.24763438236106 4.736434052450225 5.675391691417773 1.0002781685420274 0.7061415059530755 0.732678721240434 0.05212556087796915 0.0829400223197537 11.25912037394123 0.014789777472879859 0.09477838023497569 54504.71240833146 -4.736434052450225 -0.294136662588952 GNILIPGINEAVAAVTEEEHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNILIPGINEAVAAVTEEEHK 21 0 Q96KP4;Q96KP4-2 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ; 184.95 3.7688e-17 438820000.0 1089220.0 1001580.0 948330.0 885440.0 913200.0 1205730.0 1153990.0 1025950.0 1528530.0 1226580.0 False True 1083355.7605437175 1034916.9848321049 1081846.6209678722 997536.6132137926 1029490.6070395361 1122380.723083123 1098167.095030102 1102511.5986685404 1151844.2627526408 1148298.6142720282 0.9434442810248608 0.9012611980623155 0.9421300413688266 0.8687083662869242 0.8965356173421744 0.97742931075003 0.9563427852138379 0.9601262119152562 1.0030877407989038 1.0 20.131066431989954 2.7336387479609843 24.98094570040124 0.9736548833360986 0.9093521169239136 0.655014320728306 0.024850848877500036 273.4690785147544 1387988.6816231932 0.007946559969460337 0.007705052006840096 541.5502341685037 -2.7336387479609843 -0.06430276641218502 GNIYYQSYEHRS(ph)PS(ph)PNIR ddPTM_BT-474_Trastuzumab_2h_R1 4 GNIYYQSYEHRSPSPNIR 18 1 A2AJT9-3;A2AJT9-2;A2AJT9 A2AJT9-3 CXorf23 Uncharacterized protein CXorf23 2 GNIYYQS(0.001)Y(0.001)EHRS(0.999)PS(1)PNIR;GNIYYQS(0.002)Y(0.004)EHRS(0.994)PS(1)PNIR;GNIYYQSY(0.007)EHRS(0.993)PS(1)PNIR;GNIYYQS(0.017)Y(0.066)EHRS(0.918)PS(0.999)PNIR 139.51 1.7766e-07 1067580000.0 479010.0 637090.0 609790.0 694830.0 659160.0 678070.0 698860.0 582730.0 703310.0 688720.0 True False 476431.0633830146 658295.1555209624 695643.1316103037 782795.4067574758 743100.1188525851 631196.6169050905 665053.4718955414 626216.2716429831 529988.6743711667 644765.2999571423 0.7389216873406231 1.0209841558854353 1.0789090722725667 1.214078063458918 1.1525125792315112 0.9789556245459337 1.031465979853053 0.9712313483442856 0.8219869686014356 1.0 19.29841457728713 1.5690730951564722 3.393870782404478 0.9069930245272841 1.0421171685713333 0.12266698764088613 0.12491675282034381 0.37923408459633345 9.993556811845595 0.08418924840849741 0.034144972399065145 37.07431154964366 -1.5690730951564722 0.13512414404404915 GNKHDDGT(ph)QSDSENAGAHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GNKHDDGTQSDSENAGAHRR 20 2 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 GNKHDDGT(0.5)QS(0.5)DSENAGAHRR 73.574 0.014842 117950000.0 22157.0 20418.0 17474.0 17393.0 21282.0 21543.0 22167.0 24346.0 32320.0 24820.0 True False 22037.709173874136 21097.600787058367 19934.187313269238 19594.952016655538 23992.136551703257 20053.78311676722 21094.69752383664 26162.822146483017 24355.169065811817 23235.966350528917 0.9484309299394598 0.9079717395346514 0.8579022284913698 0.843302650772237 1.0325430924527539 0.8630492407435741 0.907846792580523 1.1259623013650764 1.048166824585603 1.0 14.504072025264241 1.7523392393507344 24.99999999994562 1.0665321788788025 0.9072272181056824 0.5769088124678816 0.058454691770565496 2.7805947451725075 5052.322605911711 0.02643741524115252 0.014661008878850135 56.537843499914636 -1.7523392393507344 -0.15930496077312006 GNKHDDGTQS(ph)DSENAGAHR ddPTM_BT-474_Trastuzumab_2h_R1 6 GNKHDDGTQSDSENAGAHR 19 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 GNKHDDGT(0.108)QS(0.892)DSENAGAHR;GNKHDDGTQS(0.999)DS(0.001)ENAGAHR;GNKHDDGT(0.032)QS(0.968)DS(0.001)ENAGAHR;GNKHDDGTQS(1)DSENAGAHR;GNKHDDGT(0.182)QS(0.813)DS(0.006)ENAGAHR;GNKHDDGTQS(1)DSENAGAHR 340.49 5.704399999999998e-76 2316326000.0 897596.0 673700.2 684591.7 612853.8 681447.0 894669.0 773430.1 663887.9 1123001.0 875230.0 True False 892763.4428682899 696123.9038966291 780976.2607822731 690441.0282426851 768225.2361971863 832822.6378542923 736016.3312730957 713430.5862524478 846252.4509924426 819372.0720778975 1.0895702615348783 0.8495821710536026 0.9531399560662911 0.8426465238090822 0.9375780092784897 1.0164156995762434 0.8982687552513051 0.8707040556596151 1.0328060716621417 1.0 19.644159194492797 3.006727386188894 24.994388881382303 0.9466370429568473 0.9242352262425324 0.00512278479852768 0.07977971530573072 1045.7728706722128 3885343.6136179194 0.022793578458560504 0.027185999439756678 1015.6109769738536 -3.006727386188894 -0.02240181671431485 GNKHDDGTQS(ph)DSENAGAHRR ddPTM_BT-474_Trastuzumab_2h_R1 3 GNKHDDGTQSDSENAGAHRR 20 2 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 GNKHDDGTQS(1)DSENAGAHRR;GNKHDDGT(0.015)QS(0.985)DSENAGAHRR;GNKHDDGT(0.011)QS(0.988)DS(0.001)ENAGAHRR 185.71 1.6824e-17 790831000.0 228470.0 228528.0 215228.0 219458.0 212097.0 261513.0 258566.0 242284.0 364621.0 316005.0 True False 227239.94290540353 236134.41633190677 245530.23160468787 247241.36029846416 239106.2957525892 243435.2218453857 246058.1747619587 260364.4623732235 274765.04022108205 295837.29035450815 0.7681247439533301 0.7981901674699017 0.8299502449825163 0.8357342646094059 0.8082358226918014 0.8228686165752535 0.8317348177003039 0.8800934529288826 0.9287708114545845 1.0 18.174444390358296 1.2249067927082176 0.9207001895799514 1.0009259288162013 0.8084230450316064 0.9309602732555936 0.01711261307089301 0.12788333336196403 0.23493479356819702 0.0169429730108701 0.006048318668540821 16.784437556915627 -1.2249067927082176 -0.1925028837845949 GNKLER ddPTM_BT-474_Trastuzumab_2h_R1 1 GNKLER 6 1 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;I3L352;Q9UMR2-3;Q9NUU7-2;H3BN59;H3BMQ5 Q9NUU7;REV__Q8IV53-2 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 71.359 0.080657 371480000.0 596150.0 669970.0 635920.0 619390.0 648190.0 583200.0 697610.0 632720.0 844700.0 711820.0 False True 592940.3946384916 692269.546444582 725452.0084842718 697804.7104925122 730733.1543768704 542884.7567051321 663863.9391710049 679936.779287059 636535.0034000999 666391.0381802383 0.8897784643948339 1.0388338179562138 1.0886280980988512 1.0471399981579246 1.0965530934694674 0.8146639519457319 0.9962077836218591 1.0203270157170945 0.9551974245306953 1.0 19.346009473489815 GNKPWISLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNKPWISLPR 10 1 P62701 P62701 RPS4X 40S ribosomal protein S4, X isoform 0 ; 147.91 2.3762e-05 1584430000.0 1560280.0 2118010.0 2739300.0 1497320.0 780650.0 1336650.0 2060520.0 1158720.0 4123000.0 1607610.0 False True 1551879.625843404 2188506.6824859176 3124969.6295775673 1686880.558476321 880061.1502249392 1244250.5316356544 1960844.7756492023 1245189.570260939 3106941.8953694976 1505010.953455833 1.0311417483573462 1.454146680767093 2.0763766684899907 1.1208427118771964 0.5847539834870484 0.8267385222536647 1.3028774117202773 0.8273624636430137 2.0643981947342525 1.0 20.521342556268557 3.5097880355571003 24.679812883503175 1.0572269835218737 1.5280302301329207 0.1527113852273324 0.44274677095432563 908.4760004851894 686352.7878134522 0.11626992450242706 0.17995746499920362 3234.3576034912176 -3.5097880355571003 0.470803246611047 GNLELRPGGAHPGT(ph)CSPSRPGS ddPTM_BT-474_Trastuzumab_2h_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-3;Q96SN8-2;Q96SN8;Q96SN8-4 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 GNLELRPGGAHPGT(0.574)CS(0.413)PS(0.012)RPGS(0.001) 91.416 0.00087057 0.0 85490.0 92655.0 79729.0 91946.0 79536.0 89635.0 97921.0 81382.0 93667.0 102490.0 True False 85029.73133883193 95738.96566386966 90954.1501831088 103586.35417256421 89664.43815319384 83438.7434280941 93184.18713545399 87455.13808942256 70584.0229234962 95949.00045389638 0.8861971561620261 0.9978109746945447 0.9479426544606099 1.0795980539926269 0.934501013340704 0.8696155565287678 0.9711845531963526 0.9114752386758304 0.7356410446131945 1.0 16.549980156812023 3.0052336043447463 24.998541601359232 0.900166526678664 0.9809062024836301 0.1840630679760421 0.07951252562340136 239.8735722375568 1145751.2786567353 0.022427108062850098 0.026723138280457446 1012.1237230256686 -3.0052336043447463 0.0807396758049661 GNLELRPGGAHPGTCS(ph)PSRPGS ddPTM_BT-474_Trastuzumab_2h_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-3;Q96SN8-2;Q96SN8;Q96SN8-4 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 GNLELRPGGAHPGT(0.254)CS(0.735)PS(0.011)RPGS 106.28 0.00025661 490330000.0 377540.0 392780.0 322380.0 441060.0 381660.0 399890.0 381120.0 351180.0 389800.0 394510.0 True False 375507.3665886376 405853.4448594763 367768.30182280747 496898.15077709995 430262.1387239484 372246.5455398062 362683.76958021487 377386.83485590684 293739.0130523961 369332.03404299635 1.016720273294578 1.0988850341972456 0.9957660531011322 1.3453968380095964 1.1649737879868247 1.0078913043770001 0.9819992206199815 1.0218091041947712 0.7953250354075706 1.0 18.494558874675075 2.5719207302194906 3.8859701152584174 0.9627956107162632 1.1274028713358657 0.37619619677806104 0.10624688862831541 0.28061295014666 7.685908766448021 0.0372194505752381 0.034302057730492976 373.18203637293243 -2.5719207302194906 0.1646072606196025 GNLELRPGGAHPGTCSPS(ph)RPGS ddPTM_BT-474_Trastuzumab_2h_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-3;Q96SN8-2;Q96SN8;Q96SN8-4 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 GNLELRPGGAHPGT(0.138)CS(0.326)PS(0.535)RPGS(0.001) 143.86 8.2256e-08 431330000.0 244500.0 281860.0 261090.0 285020.0 294670.0 313160.0 290300.0 239080.0 300200.0 312440.0 True False 243183.63916650394 291241.5397120321 297849.2025650378 321103.5027762409 332194.4778540739 291511.98629934643 276257.0799463065 256921.36362364073 226219.73247390793 292499.81170665845 0.8313975921816572 0.9956982126337632 1.018288527528162 1.0977904597705124 1.1357083476936538 0.99662281694628 0.9444692573797571 0.8783642017564833 0.7734012926503305 1.0 18.15807617041505 2.024809196406501 2.438147253493218 0.8720786743527432 1.0219822456917442 0.2860185647175387 0.09070056229756583 0.34940276444840296 3.9450219431874376 0.04851977583754162 0.027428848851106035 105.87884532602287 -2.024809196406501 0.149903571339001 GNLLHFPSS(ph)QGEEEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNLLHFPSSQGEEEKEK 17 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 GNLLHFPSS(1)QGEEEKEK;GNLLHFPS(0.238)S(0.762)QGEEEKEK;GNLLHFPS(0.148)S(0.852)QGEEEKEK 182.39 4.5303e-10 869380000.0 1171820.0 773090.0 654620.0 599100.0 617180.0 953690.0 901190.0 851600.0 1449080.0 926570.0 True False 1165511.051321442 798821.8333072267 746784.8059409593 674945.9985728938 695774.214687539 887763.6550447827 857595.9968198837 915150.7163371794 1091973.6506771843 867435.5093235134 1.3436284758856467 0.9209005450217315 0.8609110393962937 0.7780935773533916 0.8021048333958016 1.023434763164264 0.9886567792096692 1.0550072097588876 1.2588528356751056 1.0 19.72639697698342 1.772744571981151 1.853690163868897 1.1293166637972327 0.9350738191057647 0.14810613350591428 0.16058187140030636 0.5649262112732144 3.8234174087780426 0.11476004290642965 0.048065862230057134 59.2576701194631 -1.772744571981151 -0.19424284469146802 GNLYSFGCPEYGQLGHNSDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GNLYSFGCPEYGQLGHNSDGK 21 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;; 288.96 4.0598e-47 3671760000.0 1533030.0 2560560.0 2721210.0 2998710.0 2939270.0 3062180.0 3005440.0 2978240.0 3114040.0 3294750.0 False True 1524776.336815644 2645786.691708791 3104332.7148186644 3378346.3785353373 3313568.612081799 2850498.704196366 2860055.3853042647 3200491.3919962887 2346626.567998161 3084476.23422261 0.4943388183374796 0.8577750291454642 1.0064375534412437 1.0952739207558824 1.0742726999538474 0.9241435134334196 0.9272418291221145 1.0376125957744389 0.7607860751080121 1.0 21.556594099722528 4.705591847685056 2.54121696958025 0.9846286434436201 0.4094576834238333 0.7215367706187887 0.09027373533998066 0.23108172838648816 2.0053755523276773 0.022413840699617583 0.2767366387526939 50768.20958956852 -4.705591847685056 -0.5751709600197867 down GNPS(ph)PPAAGEGQRPPPPLCVPGGGGGAPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNPSPPAAGEGQRPPPPLCVPGGGGGAPAR 30 1 Q92623 Q92623 TTC9 Tetratricopeptide repeat protein 9A 1 GNPS(1)PPAAGEGQRPPPPLCVPGGGGGAPAR;GNPS(1)PPAAGEGQRPPPPLCVPGGGGGAPAR 188.64 1.9654e-18 846050000.0 174092.0 113278.0 125190.0 123938.0 102954.0 144000.0 151958.0 124790.0 206444.0 138371.0 True False 173154.70801543965 117048.38975200296 142815.6638290133 139628.53809235053 116064.58164383325 134045.61893953875 144607.2110040676 134102.46347078044 155568.64240787303 129540.04431462691 1.336688658179562 0.9035691655911108 1.1024827464327753 1.0778793448087811 0.8959745402119483 1.0347813268765655 1.116312810985656 1.035220145093299 1.200930903111534 1.0 16.983038617165697 4.756887387276396 24.58339254297451 1.0433850174977346 1.3366889747956487 0.5019594923780595 0.08838713131762604 2621.568054741922 3516480.340766824 0.020312396762612105 0.6605661633292774 57133.047125549056 -4.756887387276396 0.29330395729791414 GNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GNRGSGGGGGGGGQGSTNYGK 21 1 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK 191.53 8.5315e-18 538026000.0 309594.0 338741.0 323724.0 357921.0 364501.0 373737.0 372048.0 339523.0 482664.0 404619.0 True False 307927.1803031272 350015.78941174096 369301.52534055 403233.7619015328 410918.0417833098 347901.4408722664 354050.61687862006 364859.9303228602 363717.92456624366 378795.86900824617 0.8129106083161214 0.9240221925549069 0.9749354614332146 1.064514676353967 1.0848007473237897 0.9184404301534049 0.9346739123781537 0.9632098979276815 0.9601950663256197 1.0 18.531061071890907 4.634680804253179 2.2191315357294337 0.9859187550235552 0.7894964484174801 0.5396189307993995 0.049623492126520494 0.42602553703881535 2.8621117295251524 0.014057147639708292 0.15039377552078828 43120.203745764775 -4.634680804253179 -0.19642230660607507 GNRPVILTYHDIGMNHK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNRPVILTYHDIGMNHK 17 1 Q92597;E5RI76;E5RIR1;E5RGM5;E5RIM2;E5RH82;E5RK17;E5RIV1 Q92597 NDRG1 Protein NDRG1 0 ;; 260.25 1.9934e-27 6555080000.0 2781690.0 2578990.0 2652890.0 2289220.0 2048970.0 4120200.0 4148390.0 1726300.0 4103860.0 3259650.0 False True 2766713.690114811 2664830.1231176225 3026393.852666751 2579035.0172809847 2309894.184303331 3835380.27190755 3947716.527311258 1855125.2719737792 3092518.691906638 3051616.3462732323 0.9066387698092007 0.8732520149107308 0.9917347101521186 0.8451373713575153 0.7569412148169528 1.2568356689370486 1.2936477195543872 0.6079156294464537 1.013403501945242 1.0 21.541142165139902 GNS(ph)PPSSGEACR ddPTM_BT-474_Trastuzumab_2h_R1 6 GNSPPSSGEACR 12 0 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 GNS(0.883)PPS(0.059)S(0.059)GEACR;GNS(0.992)PPS(0.006)S(0.003)GEACR;GNS(1)PPSSGEACR;GNS(0.985)PPS(0.007)S(0.007)GEACR;GNS(0.999)PPSSGEACR;GNS(1)PPSSGEACR 184.22 1.5315e-05 1114179000.0 643677.0 741786.0 679951.0 717555.0 691974.0 730209.0 699867.0 645517.0 747479.0 710206.0 True False 640211.5145512385 766475.8985908948 775682.1905599596 808397.3894274293 780092.7872487693 679731.3705570947 666011.7594584279 693688.7564089078 563272.8161554444 664880.045042052 0.9628977728016287 1.1528032827973007 1.1666498285580216 1.2158544920329202 1.1732835013862242 1.0223368495201317 1.0017021332266098 1.0433291863422276 0.8471796083454703 1.0 19.34273455334647 2.6043834854622867 4.0222035056109595 0.9870990539127292 1.1412978811032701 0.48090144223213516 0.0790918380044849 0.21917112955945592 6.071453434486497 0.02703527533952244 0.02520149060156114 402.1457519974776 -2.6043834854622867 0.1541988271905409 GNS(ph)RPGTPS(ph)AEGGSTSSTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 2 GNS(0.668)RPGT(0.332)PS(0.686)AEGGS(0.271)T(0.022)S(0.013)S(0.008)TLR;GNS(0.983)RPGT(0.018)PS(0.71)AEGGS(0.22)T(0.045)S(0.01)S(0.008)T(0.006)LR 264.48 1.7385999999999995e-35 1181250000.0 1379280.0 1489980.0 1349970.0 1360760.0 1302270.0 1414720.0 1280800.0 1280690.0 1357060.0 1461260.0 True False 1371854.1097324134 1539573.0835880702 1540034.0418504127 1533032.0764781348 1468106.365340973 1316923.7362926663 1218842.8108688565 1376261.5910120504 1022630.7466723578 1368001.1357523738 1.00281649910906 1.1254179863976028 1.1257549439119612 1.1206365524214257 1.0731762766655477 0.9626627506916389 0.890966227303983 1.006038339474867 0.7475364748947602 1.0 20.3836379973138 2.6985760247183705 2.799096969172626 0.9209399365046463 1.0984407275152188 0.5647993908119147 0.07469860611505048 0.20164459390119 3.147618581380615 0.024791768544744335 0.024112951709230418 499.54661988060553 -2.6985760247183705 0.17750079101057248 GNS(ph)RPGTPSAEGGS(ph)TSSTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 2 GNS(0.828)RPGT(0.172)PS(0.149)AEGGS(0.696)T(0.149)S(0.005)S(0.002)TLR 203.59 1.2515e-20 1248900000.0 505620.0 531850.0 443980.0 464430.0 454330.0 487910.0 468430.0 434890.0 500490.0 481730.0 True False 502897.79809966247 549552.3057398864 506488.5248566599 523226.79038091924 512186.2324751125 454181.9301165997 445770.25132362475 467343.70012667426 377150.9457224056 450985.57897019683 1.115108379403183 1.218558489153382 1.1230703341184463 1.1601851916765977 1.1357042361413514 1.0070874797231912 0.9884357108303086 1.036271938437212 0.8362816092337388 1.0 18.782721776030954 2.7021507587872473 2.1481331972911804 0.9744884076293205 1.1584287165276577 0.7213566875979682 0.0553669215304106 0.17363443771686715 1.5810509057083533 0.01980434433017078 0.01914347579851131 503.67542177968255 -2.7021507587872473 0.18394030889833712 GNSRPGT(ph)PSAEGGSTSSTLR ddPTM_BT-474_Trastuzumab_2h_R1 5 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 GNS(0.007)RPGT(0.983)PS(0.007)AEGGS(0.002)TSSTLR;GNSRPGT(0.87)PS(0.1)AEGGS(0.003)T(0.024)S(0.003)STLR;GNSRPGT(0.996)PS(0.004)AEGGSTSSTLR;GNSRPGT(0.988)PS(0.012)AEGGSTSSTLR;GNSRPGT(1)PSAEGGSTSSTLR 214.27 2.0616e-24 3536160000.0 1290699.0 2011385.0 1689011.0 1793688.0 1843697.0 1847513.0 1975471.0 1617736.0 1784629.0 1849149.0 True False 1283750.0199941392 2078332.7338170935 1926809.0676532113 2020768.716889027 2078480.8845017243 1719798.7748878028 1879909.9206979338 1738459.6750169594 1344831.095753425 1731134.727683893 0.7415656329139007 1.2005609387766838 1.1130324155827627 1.1673087510598548 1.2006465188775632 0.9934517212237682 1.0859408517632183 1.004231298243821 0.7768494700309615 1.0 20.723286577909516 1.4836712199987236 4.198409007148553 0.8860582291085155 1.0824674037345268 0.21580080114445166 0.13639806820651146 0.2516932179097827 9.182838475049648 0.08595541824420498 0.03363976595985994 30.45588472404966 -1.4836712199987236 0.19640917462601126 GNSRPGTPSAEGGST(ph)SSTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 GNSRPGTPSAEGGS(0.134)T(0.41)S(0.41)S(0.047)TLR 262.63 1.2198e-35 247430000.0 188000.0 293500.0 272620.0 278740.0 295140.0 272610.0 287230.0 259520.0 257460.0 283790.0 True False 186987.82888876362 303268.97007550334 311002.52634448133 314028.4554201436 332724.329568166 253765.11235491422 273335.5875748455 278886.70021585777 194012.43278724977 265678.279235157 0.7038130080752935 1.1414895148695015 1.1705982409996225 1.1819876894873702 1.2523580419371252 0.9551594247202339 1.0288217326675426 1.0497158481255058 0.7302532722877416 1.0 18.019320758265767 1.3667378029999204 7.38876699745621 0.8663155921458655 1.0729168246418646 0.19613892517682685 0.157130406306348 0.33008058043415733 19.67758813305001 0.10467591939842609 0.03812993744180163 23.26686141224652 -1.3667378029999204 0.20660123249599904 GNSS(ph)DHEGCWNEESWTFSQSGTSGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNSSDHEGCWNEESWTFSQSGTSGSK 26 0 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 GNS(0.193)S(0.807)DHEGCWNEESWTFSQSGTSGSK;GNS(0.132)S(0.868)DHEGCWNEESWTFSQSGTSGSK 244.57 1.8149e-45 562490000.0 305690.0 291100.0 267550.0 281820.0 245410.0 379680.0 339800.0 309270.0 415260.0 385840.0 True False 304044.19900535175 300789.087526334 305218.7144137109 317498.3831043445 276661.50884096895 353433.61527058325 323362.5758379437 332349.29784123925 312924.73719891737 361215.36086575687 0.8417255519716051 0.8327139986666295 0.8449771174796282 0.8789725396599081 0.7659184487001599 0.9784567700096629 0.8952071558167182 0.920086280507751 0.8663107140540838 1.0 18.46249971989578 2.7324477977644164 24.99973508109586 0.923511620266562 0.8360881457137204 0.5491382250031642 0.04454133383142054 407.27706745067354 1665645.6742680396 0.013437596782966297 0.01296214282173085 540.0671947378861 -2.7324477977644164 -0.0874234745528416 GNTFVHDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GNTFVHDPK 9 0 Q92878-2;Q92878;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;E7ESD9;E9PM98 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 82.37899999999998 0.018619 818410000.0 769100.0 794480.0 729250.0 693650.0 764820.0 883130.0 847330.0 730970.0 1062990.0 865020.0 False True 764959.2510550432 820923.7865266976 831922.0612453697 781466.0188784633 862215.2935566992 822081.3017644082 806341.4107850633 785518.6931904503 801030.3578362408 809813.6830191184 0.9446114175339066 1.0137193329040315 1.0273005738107903 0.9649948318544455 1.0647082305922753 1.0151486928444506 0.9957122578849126 0.9699992846032283 0.9891538938313169 1.0 19.627230494157843 -0.4777659251129025 6.261540634907219 0.9999999996805571 0.9989023259929896 0.0 0.03264686945899821 0.0 0.0 0.031239329755303927 0.007363180636566034 0.33283889758396545 0.4777659251129025 -0.0010976736875675241 GNVAGDSK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNVAGDSK 8 0 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;; 90.601 0.030432 270108000.0 992580.0 804500.0 738010.0 708790.0 744360.0 751810.0 870030.0 890210.0 1163110.0 923480.0 False True 987236.0595660051 831277.2961694801 841915.3931020849 798522.7413261246 839149.8338326213 699839.1442703787 827943.3250626432 956641.9905947867 876477.1253755079 864542.7157689952 1.1419170407188919 0.9615225263104251 0.9738274092717515 0.9236359600992682 0.9706285398358977 0.8094905335566727 0.9576661857895621 1.1065294671343924 1.0138043030018444 1.0 19.72157772148037 -0.32912745749888206 6.2155529098792455 1.0000013694022838 0.98386093922618 0.002855016312189873 0.08741792058231268 11949275.43198759 1922479.8922471418 0.08876022259188776 0.02152751599852624 0.46867581416741566 0.32912745749888206 -0.01614043017610378 GNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 49 1 P68104;A0A087WVQ9;A0A087WV01 P68104 EEF1A1 Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 ;; 297.39 7.480499999999996e-103 2250270000.0 1760426.0 2063055.0 1981139.0 2111865.0 1969548.0 2364793.0 2581940.0 871715.0 3548396.0 2099189.0 False True 1750948.0620177172 2131722.538531918 2260066.1508311136 2379226.8924656035 2220358.2633744027 2201320.4260339485 2457041.698231372 936766.799779079 2673941.3518703724 1965216.9608138786 0.8909693417731223 1.0847263081065017 1.150033912741688 1.2106688166787785 1.129828567353123 1.120141170124183 1.2502648548350652 0.47667347598665377 1.3606341717929105 1.0 20.906257164765556 GNVCGDSK ddPTM_BT-474_Trastuzumab_2h_R1 3 GNVCGDSK 8 0 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ;; 108.98 0.010763 196617000.0 530280.0 522080.0 467280.0 432518.0 460752.0 347129.0 510030.0 489180.0 689830.0 583750.0 False True 527425.0313996461 539457.1171959754 533068.9623294295 487274.73445292993 519426.03610893583 323132.7892837719 485357.9003961927 525685.0956057076 519830.6397484208 546494.5752264812 0.9651057033476824 0.987122547323385 0.9754332183599667 0.8916369101211864 0.9504687871671417 0.5912827023943604 0.8881294021904025 0.961921891700115 0.9512091488428587 1.0 19.059847649505635 3.6682932515204563 2.4111561338801017 0.8810979089545846 0.9795986309262974 0.11299466543737913 0.10713713127288628 0.6584653877576492 7.47310076519996 0.031870420389069974 0.05832724413650879 4659.005804488013 -3.6682932515204563 0.09850072197171278 GNVLQPEESLLDPFGAKPFHS(ph)PDLSWHPPHQGLSDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GNVLQPEESLLDPFGAKPFHSPDLSWHPPHQGLSDIR 37 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 GNVLQPEESLLDPFGAKPFHS(0.954)PDLS(0.043)WHPPHQGLS(0.003)DIR 119.06 1.1277e-06 249380000.0 130370.0 150700.0 153520.0 140380.0 150340.0 163080.0 208000.0 83081.0 189900.0 129510.0 True False 129668.10240546866 155715.95839992628 175134.2815802389 158152.0936065142 169484.90786500648 151806.66344902734 197938.24536283765 89280.92609676985 143101.6895296306 121244.5609209107 1.069475623653359 1.284312939213015 1.4444712426686184 1.3044056772961445 1.3978763795892133 1.2520698849992344 1.6325536078435319 0.7363705672125687 1.1802730649746636 1.0 16.887560503316497 1.732738871644878 24.999999884029332 0.9670229671154007 1.3399479498560793 0.5001890984272592 0.1687895043639614 0.45617075904460647 1944.003864107813 0.0735299076042665 0.040776041242423636 54.042928118314805 -1.732738871644878 0.37292498274067865 GNVVPS(ph)PLPTR ddPTM_BT-474_Trastuzumab_2h_R1 6 GNVVPSPLPTR 11 0 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 GNVVPS(0.999)PLPT(0.001)R;GNVVPS(0.96)PLPT(0.04)R;GNVVPS(0.974)PLPT(0.026)R;GNVVPS(0.996)PLPT(0.004)R;GNVVPS(1)PLPTR;GNVVPS(0.993)PLPT(0.007)R 127.78 0.00029326 134691200000.0 6111580.0 6415590.0 6022100.0 5735960.0 5619600.0 6913190.0 6547690.0 5567040.0 6218880.0 6190140.0 True False 6078675.932340373 6629129.034843941 6869959.33496846 6462131.947878778 6335222.750021231 6435297.447198806 6230953.22009518 5982480.793656319 4686320.352722643 5795079.965554514 1.048937369021917 1.1439236514848712 1.1854813696796147 1.1151066053081522 1.0932071322013297 1.1104760392349533 1.0752143641039402 1.0323379192721587 0.8086722496631197 1.0 22.46639713825445 1.510697216478751 3.069452767150805 0.9050551482905942 1.113938348276529 0.6675320505319697 0.05688882895149271 0.12095104606908351 2.3875157345111684 0.0390689303124418 0.014314963489516979 32.41135714978444 -1.510697216478751 0.20888319998593485 GNVVPS(ph)PLPTRR ddPTM_BT-474_Trastuzumab_2h_R1 9 GNVVPSPLPTRR 12 1 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR 129.29 0.00014504 43340660000.0 3991990.0 5527530.0 4943040.0 5383000.0 4987630.0 5177530.0 5406700.0 4379270.0 5597580.0 5277820.0 True False 3970497.5693917824 5711510.494587559 5638977.066326101 6064487.248068582 5622775.116500877 4819619.53769465 5145157.265400261 4706073.364882479 4218131.41272917 4940985.009030967 0.8035842169394645 1.1559457242125308 1.1412657711001688 1.2273842638632004 1.1379866780052472 0.9754369885529931 1.0413221768526142 0.9524565155087247 0.8537025319889477 1.0 22.236367247973494 2.1708268308413894 1.411939467147969 0.9328659741764078 1.101012003867158 0.22895474011720063 0.11489769117654486 0.5840792458440915 2.240195873958619 0.07187622737663815 0.039530528248269456 148.19270685804577 -2.1708268308413894 0.1681460296907502 GNWAHSGFPEIAFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GNWAHSGFPEIAFGR 15 0 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;P52701-4 P52701 MSH6 DNA mismatch repair protein Msh6 0 ; 160.47 1.7069e-06 669110000.0 639520.0 738020.0 738340.0 735200.0 723800.0 753960.0 755240.0 678370.0 797380.0 716640.0 False True 636076.8953773516 762584.549557489 842291.8542336744 828276.2446182464 815971.6397012895 701840.519830935 718706.1559030261 728993.4140930626 600876.3833445868 670903.4216536286 0.9480901048463319 1.136653242396479 1.255459171988736 1.2345685204238914 1.2162281684152092 1.0461125956118293 1.0712512899868276 1.0865847312214552 0.8956227736379097 1.0 19.355745575989584 2.6601552831897353 6.424103893097331 1.0335136756423629 1.1664457072960934 0.34595760418184285 0.09385722331419774 0.31071908232071654 20.964832650868512 0.03197682800921989 0.030144026289365647 457.25165197913293 -2.6601552831897353 0.13293203165373058 GNWDEQFDKENTEER ddPTM_BT-474_Trastuzumab_2h_R1 3 GNWDEQFDKENTEER 15 1 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237;A0A2R8Y6A7 A0A2R8YD12 SERPINB6 Serpin B6 0 ;; 166.52 1.243e-06 2436460000.0 1452530.0 1634570.0 1565220.0 1411790.0 1097350.0 1480570.0 1855320.0 1398520.0 2552620.0 1658180.0 False True 1444709.7398712533 1688975.6743315698 1785589.3708638716 1590522.4692459083 1237091.017996972 1378221.680786893 1765571.0835893282 1502884.663940666 1923561.0043555843 1552353.5327606802 0.930657681631326 1.0880096825160201 1.150246598587893 1.0245877860163395 0.7969131978570303 0.8878271938067394 1.1373511550873758 0.9681329878948132 1.2391256010702374 1.0 20.566025723420093 -0.5374426486625068 7.467174684820024 1.0000017277363185 1.0206249807850136 0.0024609589241346708 0.12698717445929722 0.0 0.0 0.12314916262024293 0.029026535995406236 0.29010642773140266 0.5374426486625068 0.020623253048695167 GNWEQPQNQNQTQHK ddPTM_BT-474_Trastuzumab_2h_R1 4 GNWEQPQNQNQTQHK 15 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 ;;; 241.3 7.0937e-18 2098890000.0 966610.0 935650.0 978900.0 868990.0 913410.0 1101180.0 1041240.0 917220.0 1105140.0 1050420.0 False True 961405.879160467 966792.5446376309 1116720.6112486708 979004.0449004485 1029727.3492947704 1025058.0184988979 990871.2432769268 985667.6139487858 832793.0551173035 983381.2962901928 0.9776532081577837 0.9831309058702429 1.1355926896937139 0.9955487750211872 1.0471292805541637 1.0423810401580045 1.0076165237380352 1.0023249554035838 0.8468668849601029 1.0 19.907391390093615 1.4233498244790317 5.694236328052319 0.9216227691606906 1.0274598648849715 0.35482328742677327 0.05481610115252997 0.19373551086580953 11.217887032167168 0.03481439555771732 0.013137351272176514 26.506343665840415 -1.4233498244790317 0.1058370957242809 GNYAER ddPTM_BT-474_Trastuzumab_2h_R1 3 GNYAER 6 0 Q99878;Q96KK5;Q6FI13;P0C0S8;Q16777;Q9BTM1;Q9BTM1-2;Q96QV6;H0YFX9;Q8IUE6 Q99878 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG;HIST2H2AC;H2AFJ;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-C;Histone H2A.J;Histone H2A type 1-A;Histone H2A;Histone H2A type 2-B 0 ;; 125.08 0.042052 3119800000.0 2153060.0 3112180.0 2723560.0 2792760.0 2587000.0 2049500.0 2615280.0 2489860.0 3230740.0 2372430.0 False True 2141468.1641874514 3215767.0299474597 3107013.574392099 3146323.1296518655 2916439.115649676 1907822.8890040587 2488768.9150602035 2675665.996452895 2434567.4166980456 2221019.486260488 0.9641825195298144 1.4478788006321455 1.3989132439460725 1.4166121229982107 1.3131082971991659 0.8589852096328268 1.1205524897264736 1.2047017205409085 1.096148607321364 1.0 21.08279061984439 2.9228458155839476 15.103623392926371 1.0852518878528692 1.3287025912626427 0.3950667017966353 0.15291602979759697 3.1435507767872033 613.9847393161782 0.04670279806305541 0.049538244622393826 837.2319929633372 -2.9228458155839476 0.24345070340977348 GNYDEGFGHRPHK ddPTM_BT-474_Trastuzumab_2h_R1 1 GNYDEGFGHRPHK 13 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 164.53 2.2159e-05 355250000.0 311930.0 332090.0 343850.0 301200.0 329360.0 372520.0 360110.0 153030.0 416630.0 325880.0 False True 310250.603538681 343143.4148973554 392261.09120222204 339331.8891172679 371302.0437303351 346768.56921775604 342690.1035462093 164449.87567059457 313957.1190559772 305082.05940009566 1.0169414882958001 1.1247577637705164 1.285756009296491 1.1122643192605954 1.2170563043282598 1.1366403186723975 1.1232718968138111 0.5390348943951799 1.0290907294690916 1.0 18.218837817986525 1.893986078501824 9.819610436747979 0.8096170026568716 1.1532547348157973 0.4581070684673221 0.14164133050554473 0.28672559015834326 24.801721732943708 0.056343509384526126 0.03576396989550724 78.34045299913723 -1.893986078501824 0.3436377321589257 GPAAEEALNVFYYCTYEGAVDLDHVTDER ddPTM_BT-474_Trastuzumab_2h_R1 1 GPAAEEALNVFYYCTYEGAVDLDHVTDER 29 0 A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H0Y764;H7C3Y7;H7C408 A0A494C1V1 NBEAL2 Neurobeachin-like protein 2 0 155.45 1.2611e-08 21603000.0 15835.0 21292.0 17035.0 20285.0 20042.0 19541.0 20684.0 16797.0 23188.0 22013.0 False True 15749.746119433885 22000.69134871419 19433.379929125644 22853.078920132095 22594.22990175908 18190.17666456615 19683.4358994468 18050.47743343774 17473.62810328108 20608.111493722525 0.7642498500763374 1.0675743556325314 0.9429966416401271 1.1089361064012786 1.0963755659339067 0.8826707226475892 0.9551305031245879 0.875891875824533 0.847900503090919 1.0 14.33092468338468 2.707049375381631 24.816133234651 0.90595589322257 1.00332806437258 0.14464516948434325 0.10040700869953745 1048.5745673617603 825785.7155272996 0.03177188544427766 0.0299575845165782 509.38878069411476 -2.707049375381631 0.09737217115000996 GPAGEAGAS(ph)PPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPAGEAGASPPVR 13 0 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 GPAGEAGAS(1)PPVR;GPAGEAGAS(1)PPVR;GPAGEAGAS(1)PPVR;GPAGEAGAS(1)PPVR 142.39 4.2287e-05 2697910000.0 1199320.0 1365060.0 1345120.0 1410520.0 1338110.0 1477860.0 1376270.0 1197400.0 1422430.0 1425090.0 True False 1192862.9943769795 1410495.1969038055 1534501.2040073664 1589091.6873761246 1508510.3769006508 1375699.016708241 1309694.56223804 1286756.0682739993 1071891.1860854786 1334139.536119067 0.8941066223454762 1.057232140055494 1.1501804439969896 1.1910985652960246 1.1306991031004283 1.0311507750606568 0.9816773484187897 0.9644838740159792 0.8034325923685214 1.0 20.34747813355233 2.0877411776244714 1.6290194093214396 0.91398278574384 1.09069971952083 0.3902828326159655 0.08823402196515376 0.3948673970873313 1.9908440903400335 0.055868730008843945 0.029526082166556125 122.38865937588437 -2.0877411776244714 0.17671693377698994 GPAGEAGAS(ph)PPVRR ddPTM_BT-474_Trastuzumab_2h_R1 6 GPAGEAGASPPVRR 14 1 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR 153.75 3.8631e-06 6645760000.0 1880560.0 2505590.0 2322420.0 2447870.0 2338520.0 2342660.0 2296880.0 1965490.0 2427970.0 2563440.0 True False 1870435.2739098584 2588987.0484888596 2649396.549163488 2757770.091014232 2636316.660506022 2180717.428228471 2185771.139466321 2112164.8443559883 1829629.3266311612 2399839.0645286026 0.7794002946098662 1.0788169451677005 1.1039892584146704 1.1491479290324567 1.098538939328363 0.9086931954984351 0.910799049725307 0.8801277033845093 0.7623966763748605 1.0 21.194506229911532 2.642429106905305 5.058868675107712 0.8834765483919512 1.0530722114438655 0.31782639083231623 0.10894848102873063 0.256884576508067 10.49487374804625 0.036078325945098154 0.03396104906902294 438.96420442423016 -2.642429106905305 0.1695956630519143 GPAGNNDCR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPAGNNDCR 9 0 J3KTL2;Q07955;Q07955-3;Q07955-2;J3QQV5;J3KSW7 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 88.819 0.029141000000000007 33268000.0 59225.0 73178.0 68596.0 68388.0 66631.0 44699.0 56945.0 55353.0 73289.0 66841.0 False True 58906.13918051609 75613.68549296478 78253.72055287962 77045.91378802044 75116.0628971215 41609.06334012806 54190.35279897496 59483.72193683874 55227.907972285895 62575.15015454085 0.9413663256905743 1.208366025590396 1.2505558573909556 1.2312541575648062 1.2004136260417844 0.6649454813510925 0.8660043590010077 0.950596551345586 0.8825853048037506 1.0 15.933302227340029 2.7639439462989555 24.996387244006442 0.8759940495480688 1.1770024804645765 0.6211425826324395 0.11447151038811967 499.09257393363123 491483.61246268253 0.035238169083384605 0.037363658189548864 580.6894640147916 -2.7639439462989555 0.30100843091650764 GPALTPIRDEEWGGHS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 GPALTPIRDEEWGGHSPR 18 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 GPALTPIRDEEWGGHS(1)PR;GPALTPIRDEEWGGHS(1)PR;GPALTPIRDEEWGGHS(1)PR;GPALTPIRDEEWGGHS(1)PR;GPALTPIRDEEWGGHS(1)PR 187.79 2.4825e-14 1628890000.0 974366.0 1439746.0 1530366.0 1478799.0 1556969.0 1830465.0 1344414.0 1135094.0 1473898.0 1354661.0 True False 969120.12171824 1487667.0752651626 1745828.2306202685 1666014.8017753246 1755239.7732717264 1703929.2630011307 1279379.5586597775 1219800.4781705404 1110675.5871213467 1268205.3751963687 0.7641665464224843 1.1730490221544854 1.3766131769863732 1.313679025778738 1.3840343272476239 1.3435751782216618 1.0088110204245733 0.9618319729812427 0.8757852701494582 1.0 20.274356966051403 2.117829577525803 5.53077194865425 0.9523562881953682 1.2407392923392957 0.3631476313319282 0.17188509981176267 0.23142457173326564 10.313098125906878 0.06896946269637375 0.050477809469155276 131.1685076724114 -2.117829577525803 0.2883830041439275 GPANGT(ph)PPPLPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPANGTPPPLPAR 13 0 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 GPANGT(1)PPPLPAR 89.541 0.082747 370620000.0 389520.0 425730.0 374180.0 390900.0 376670.0 431060.0 409950.0 380860.0 402890.0 402200.0 True False 387422.8675997408 439900.16569077986 426861.29156913655 440387.89992012014 424636.6918019957 401261.83680609416 390119.15233891935 409281.70716789295 303603.15794940974 376531.25165925565 1.0289261937554697 1.1682965590565915 1.133667629680384 1.1695918943765442 1.1277594885703495 1.0656800332983214 1.0360870462140555 1.0869793818290414 0.8063159607908386 1.0 18.522410086326598 1.3363347940912247 6.6768712396508985 0.9049584404664146 1.1046821855737663 0.6095213955897321 0.06371220691233626 0.1280117045751683 7.15229977951867 0.043190121181058846 0.015557604067160911 21.69375814591272 -1.3363347940912247 0.1997237451073517 GPAS(ph)DS(ph)ETEDASR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPASDSETEDASR 13 0 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 2 GPAS(1)DS(0.992)ET(0.008)EDASR;GPAS(1)DS(0.998)ET(0.002)EDASR 230.23 6.484e-12 625800000.0 1204590.0 1224900.0 1060730.0 1128670.0 1149260.0 1192100.0 1147620.0 1066030.0 1176060.0 1124270.0 True False 1198104.621282532 1265670.0560323151 1210071.5639695597 1271559.5062748562 1295611.448802297 1109692.9329015545 1092105.2362658642 1145582.5717906565 886235.7713966165 1052518.1260640277 1.13832207884432 1.202516160710111 1.1496918998390224 1.2081117415335645 1.2309635499080054 1.0543219213253234 1.0376118085014607 1.0884207534502521 0.8420147353763523 1.0 20.005413648371196 2.059949772468638 0.9827930840858162 0.9549816660042546 1.1849879772873615 0.6721143398322557 0.06420563287481591 0.33393888057838333 0.5968579773276554 0.05038343681752047 0.024895024585067642 114.80208415750396 -2.059949772468638 0.2300063112831069 GPAS(ph)DSETEDASR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPASDSETEDASR 13 0 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 1 GPAS(0.612)DS(0.336)ET(0.052)EDASR 197.25 4.255399999999999e-07 0.0 184630.0 234060.0 206410.0 187620.0 199340.0 216000.0 210840.0 182210.0 194230.0 215360.0 True False 183635.9725943212 241850.54560774186 235470.7338521177 211372.67276288802 224724.76741925217 201068.42840930787 200640.86371298414 195807.43544363225 146364.61904865812 201615.54042102786 0.9108225100646485 1.1995630153444146 1.1679195629483274 1.0483947433887517 1.1146202666221363 0.9972863599176062 0.9951656667635425 0.9711921761325207 0.725959014582949 1.0 17.621247319744203 2.0520328709045894 1.1631408613145968 0.8823191191951203 1.0961974654796705 0.39264991719665376 0.10031840300968844 0.46381085468943756 1.165741067743146 0.07129905124533649 0.03447826516115673 112.72827747872167 -2.0520328709045894 0.21387834628455016 GPASQFYITPSTSLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPASQFYITPSTSLSPR 17 0 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 1 GPASQFYITPST(0.001)S(0.118)LS(0.881)PR;GPASQFYITPSTSLS(1)PR;GPASQFYITPS(0.001)T(0.003)S(0.018)LS(0.977)PR;GPASQFYITPSTSLS(1)PR 226.74 2.0736999999999998e-15 1061150000.0 1049760.0 1246360.0 1102320.0 1215040.0 1141320.0 1217970.0 1186830.0 1016170.0 1262400.0 1103520.0 True False 1044108.2087992994 1287844.3391594694 1257517.0744628003 1368863.9394191415 1286660.3368663646 1133774.6006929858 1129418.4987691187 1092001.7654067045 951298.4352933428 1033092.4088289953 1.0106629376773666 1.2465916196395577 1.217235809416303 1.32501596925946 1.245445543758072 1.0974571016140882 1.0932405360032686 1.0570223496700384 0.9208260821233161 1.0 19.97853787657322 2.017130148509542 1.1872646055188385 0.9758608958870266 1.213351344215826 0.555879261690774 0.08282054041746213 0.35793045152301617 0.9345541752897325 0.06264972392218518 0.02950523664958672 104.0231853743853 -2.017130148509542 0.2374904483287993 GPAST(ph)PTYSPAPTQPAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0-2;Q6P1N0;K7EJY5 Q6P1N0-2 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 GPAS(0.011)T(0.735)PT(0.141)YS(0.112)PAPTQPAPR;GPAS(0.022)T(0.961)PT(0.017)YSPAPTQPAPR 126.63 0.00030375 321800000.0 199872.0 187376.0 164723.0 194054.0 182513.0 169571.0 198917.0 187525.0 205954.0 190964.0 True False 198795.91135986696 193612.69688881587 187914.5666020171 218621.21650319538 205754.94871069535 157848.95589719803 189294.62477326707 201519.06773265533 155199.39634220934 178776.51402749406 1.1119800184116697 1.0829873148720204 1.0511143906358846 1.222874367432702 1.150905922010831 0.8829401152375217 1.058833850760483 1.1272122002650957 0.8681196027703124 1.0 17.447797695736632 2.792219398520934 24.999488770200937 1.0120883797570555 1.123142377962662 0.38151091613577304 0.08404369531613298 427.76146964384316 199292.13847410242 0.026771945434059 0.02839591551034598 619.7540857077832 -2.792219398520934 0.11105399820560646 GPAVGIDLGTTYSCVGVFQHGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GPAVGIDLGTTYSCVGVFQHGK 22 0 P11142;E9PKE3;E9PNE6;P11142-2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;; 362.08 6.855699999999997e-97 5244400000.0 3586180.0 4079120.0 3920950.0 3678030.0 3620700.0 4034610.0 4046300.0 3601700.0 5393780.0 4469190.0 False True 3566872.4053420573 4214891.043319892 4472985.678491645 4143668.220883092 4081774.6834297553 3755706.9071503584 3850565.0106329317 3870477.143062018 4064555.1919490886 4183962.46793394 0.8525106122912703 1.007392173238405 1.0690788248634615 0.9903693574309844 0.9755763142505804 0.8976435462636796 0.9203153804901024 0.9250745370508253 0.9714607200948877 1.0 21.996438479329573 2.9364774646612135 8.183946075438136 0.935371814450551 0.9875641573711129 0.07789819959963429 0.05702735775367506 0.6407529883111892 76.68685698137938 0.01751922996680187 0.018654160074180144 863.927830707755 -2.9364774646612135 0.05219234292056196 GPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPDWHLK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 81.958 0.02579 797380000.0 560540.0 647530.0 660080.0 603060.0 568570.0 810130.0 697050.0 573090.0 881190.0 754110.0 False True 557522.1149218486 669082.6446098483 753013.5264817883 679407.3341668649 640974.0193215831 754127.6199408914 663331.0285104135 615856.8858920551 664032.5318410492 705982.0541739479 0.7897114545980796 0.9477332187894284 1.066618509677092 0.9623577967032356 0.9079182898941687 1.0681965858512896 0.9395862466880418 0.8723407093012499 0.9405799027257389 1.0 19.429271985577305 4.729637745224724 5.208607802096774 0.9626426381766995 0.7831367104668341 0.4435663723608406 0.059636941653821544 0.15051863427034665 13.870520245436783 0.015279218140034339 0.09567585892281007 53658.403286575405 -4.729637745224724 -0.1795059277098654 GPEEEHPSVTLFR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPEEEHPSVTLFR 13 0 A0A1B0GW23;Q03154;A0A1B0GU86;Q03154-2;Q03154-3;Q03154-4;A0A1B0GV31;C9JYZ0;A0A1B0GVA5;F8WC59;A0A1B0GTG3;A0A1B0GVZ3;A0A1B0GVG0;A0A1B0GU36;A0A1B0GUT4 A0A1B0GW23 ACY1 Aminoacylase-1 0 ;;; 235.73 1.0758999999999999e-16 1130480000.0 1066870.0 1769270.0 1789800.0 1852670.0 1840690.0 1820600.0 1786710.0 1602340.0 1631980.0 1772420.0 False True 1061126.0904603992 1828159.0824036999 2041788.2827795194 2087217.8320414654 2075090.9608756101 1694746.2072314173 1700280.0114049767 1721914.7473176543 1229800.3964116196 1659302.6381548932 0.6395012374839272 1.1017635001391737 1.230509875552263 1.2578885756262066 1.2505801613038259 1.0213605211379262 1.0246955391426662 1.0377339900046108 0.7411549696438317 1.0 20.662145610980236 1.4329698302524427 4.2751986377639035 0.8698611188733589 1.0903063814483862 0.16120512968314016 0.17921897181763782 0.3481598315002447 11.440008863964161 0.12817158689803348 0.04675238690916047 27.100033657240626 -1.4329698302524427 0.22044526257502728 GPEENYSRPEAPNEFYDGDHDNDKES(ph)DVEI ddPTM_BT-474_Trastuzumab_2h_R1 5 GPEENYSRPEAPNEFYDGDHDNDKESDVEI 30 2 O15379;O15379-2 O15379 HDAC3 Histone deacetylase 3 1 GPEENYSRPEAPNEFYDGDHDNDKES(1)DVEI;GPEENYSRPEAPNEFYDGDHDNDKES(1)DVEI;GPEENYSRPEAPNEFYDGDHDNDKES(1)DVEI;GPEENYSRPEAPNEFYDGDHDNDKES(1)DVEI;GPEENYSRPEAPNEFYDGDHDNDKES(1)DVEI 201.71 1.053e-25 4088640000.0 2247640.0 1732170.0 1658410.0 1412250.0 1518850.0 2037350.0 1862660.0 1783020.0 2524810.0 1976860.0 True False 2235538.95597628 1789824.2313311226 1891899.7128418717 1591040.7051987457 1712266.5445707394 1896512.789906035 1772556.0197478025 1916078.0063921036 1902604.40622068 1850695.102325003 1.2079455730810564 0.9671091845883154 1.0222643970176957 0.8596989872615662 0.9252018565454906 1.0247570156334622 0.9577785219839641 1.035328836168076 1.0280485444795657 1.0 20.819635803486825 4.7405282779560105 24.838478921287752 0.9799257074668221 1.2079456582632941 0.6280067140299881 0.05262568672003016 109.28399354988647 1379420.399228454 0.013147750800415131 0.08560305376839045 55020.97448213712 -4.7405282779560105 0.22801995079647208 GPELLTMWFGESEANVR ddPTM_BT-474_Trastuzumab_2h_R1 9 GPELLTMWFGESEANVR 17 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;; 214.88 1.3481e-14 1006864400.0 716939.5 859818.4 859549.7 911475.0 943669.7 849839.9 900036.4 854585.4 968081.1 936759.7 False True 713079.5773914662 888436.9356728024 980566.8264200747 1026867.6415443625 1063840.4427264754 791092.4680209421 856498.2008590637 918358.902044732 729510.4845271374 876974.893945672 0.8131128750826486 1.0130699770384082 1.1181241711587928 1.1709202266034042 1.2130797016777308 0.902069686923044 0.976650764773345 1.0471895015293604 0.8318487673517483 1.0 19.742176016196296 2.7055126506507556 24.99887560777 0.9642347869911697 1.0715020424269386 0.19305968963381204 0.11488536753778154 1232.6825562886772 932451.7007238015 0.03923522022824472 0.03699320941679799 507.5895244902551 -2.7055126506507556 0.10726725543576887 GPESESEDHR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPESESEDHR 10 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 232.41 2.2986e-10 1072622000.0 822293.0 1024610.0 1042741.0 1107851.0 1058201.0 1031396.0 971539.0 885984.0 1145857.0 1025895.0 False True 817865.86585334 1058713.5244601753 1189549.869132751 1248104.8230094777 1192956.6249012754 960098.0221650313 924541.9469306046 952100.6250155937 863475.8960471521 960421.5027871021 0.8515697154633963 1.1023425874866752 1.2385706334986546 1.299538608191852 1.2421177799948941 0.9996631889007773 0.9626418653139517 0.9913362229527748 0.8990593125428595 1.0 19.873308178730923 2.6071113240327946 5.696442842040487 0.9675851480180331 1.1573366708599138 0.3624900977883103 0.11707123258196968 0.2671066903105331 11.28931302115692 0.040980743872592935 0.038469644990577076 404.67961116591465 -2.6071113240327946 0.18975152284188068 GPEVDIRDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPEVDIRDPK 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 84.65799999999999 0.013471 1765080000.0 2828900.0 2638600.0 2200930.0 2122360.0 2139400.0 3119100.0 2929700.0 2591700.0 3712200.0 2754000.0 False True 2813669.5167203336 2726424.20593262 2510801.8131734957 2391050.558389526 2411839.9087827266 2903483.9585716287 2787979.2184591615 2785105.8143859385 2797378.0509315147 2578237.3621819783 1.0913151589499532 1.0574760283611864 0.9738443209311762 0.9273973736715866 0.9354607702766248 1.1261507575525909 1.081350871472779 1.0802363875562202 1.0849963203403725 1.0 21.297953659043575 2.7328828326781287 24.988024208040233 1.0800455703502803 0.9952888155837637 0.32860480430679584 0.055041851697796094 556.056356161496 2447208.6278827875 0.018836398208528914 0.01821176244282282 540.6084537427394 -2.7328828326781287 -0.08475675476651656 GPFLVSAPLSTIINWER ddPTM_BT-474_Trastuzumab_2h_R1 1 GPFLVSAPLSTIINWER 17 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5 Q14839-2;Q12873-3 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 0 176.05 2.6829000000000003e-09 36627000.0 50859.0 63693.0 55613.0 58972.0 52110.0 60678.0 59204.0 51029.0 72297.0 58496.0 False True 50585.180794966116 65812.9830017685 63442.82700313854 66437.8491534646 58745.89961983166 56483.47268064807 56340.07633875689 54837.043100011586 54480.37308016702 54762.73519905481 0.9237153807437872 1.2017840738331933 1.1585036206196206 1.213194500091575 1.0727349429552524 1.0314216862130539 1.0288031840259377 1.001356906310225 0.9948439003665276 1.0 15.740906885304593 2.87692211770689 3.064084152724126 1.0110621925921939 1.1328995691548809 0.3243264087408614 0.07579063948150286 0.28857873302847753 5.1652122148317625 0.023896009238168463 0.02581198887808501 753.2204761361257 -2.87692211770689 0.121837376562687 GPGAPGLAHLQESQAGS(ph)DTDVEEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GPGAPGLAHLQESQAGSDTDVEEGK 25 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 GPGAPGLAHLQESQAGS(0.999)DT(0.001)DVEEGK;GPGAPGLAHLQESQAGS(0.785)DT(0.215)DVEEGK;GPGAPGLAHLQESQAGS(0.993)DT(0.007)DVEEGK;GPGAPGLAHLQESQAGS(0.824)DT(0.176)DVEEGK 340.26 1.6506999999999994e-88 2037730000.0 1106770.0 979170.0 916609.0 800264.0 862260.0 1133370.0 1081690.0 1051560.0 1340310.0 1134990.0 True False 1100811.273293708 1011761.0815292354 1045659.5798917487 901577.3403470844 972063.6999845715 1055022.7995660056 1029364.5222429213 1130032.7469134845 1010008.5597338557 1062553.9664861734 1.0360050482273857 0.9521973597963139 0.9841002084343125 0.8485002821349087 0.9148370159486112 0.9929122029019635 0.9687644625213641 1.0635062147953396 0.9505480112919973 1.0 20.019104686061368 2.4003261613779876 2.4830317776007025 1.0081605815291197 0.9449852809496765 0.14551003774237692 0.05327297510167262 0.45891908650585567 5.7877618166350375 0.021794046003937324 0.017380658863159763 251.3773602764725 -2.4003261613779876 -0.0631753005794432 GPGAPGLAHLQESQAGS(ph)DTDVEEGKAPQAVPLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 GPGAPGLAHLQESQAGSDTDVEEGKAPQAVPLEK 34 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 GPGAPGLAHLQESQAGS(0.999)DT(0.001)DVEEGKAPQAVPLEK;GPGAPGLAHLQESQAGS(0.999)DT(0.001)DVEEGKAPQAVPLEK;GPGAPGLAHLQESQAGS(1)DTDVEEGKAPQAVPLEK;GPGAPGLAHLQESQAGS(1)DTDVEEGKAPQAVPLEK 382.48 1.1996999999999994e-150 23434100000.0 5168200.0 4306630.0 4472140.0 3863120.0 3741190.0 6024770.0 6021470.0 5638800.0 7853760.0 6112290.0 True False 5140374.985441003 4449973.576137193 5101778.439462279 4352190.595905381 4217608.370729571 5608291.830683082 5730188.49185079 6059595.889246227 5918306.082992277 5722198.4192052595 0.8983216954149129 0.7776685200572331 0.891576639904572 0.7605801611664219 0.7370608395147792 0.9800939114344802 1.001396329183328 1.05896290993835 1.0342713847756182 1.0 22.448138093801127 2.589896836093084 4.681209435726193 1.026855813871306 0.8131867671878946 0.7981365600123009 0.05104203607168382 0.09728391817385039 3.3511293823066852 0.017114759333596317 0.015968896581404293 388.9527407565647 -2.589896836093084 -0.21366904668341136 GPGASVHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPGASVHDR 9 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJM1;X6REW1;F6S6P2;F6U341;F6TC96;F6WML8;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 157.99 6.7216e-05 85764000.0 129440.0 225020.0 221030.0 255420.0 233450.0 232470.0 249910.0 200340.0 215610.0 214350.0 False True 128743.10942213605 232509.65467253773 252149.10277279993 287756.14581119776 263178.4737334427 216399.89607551746 237820.89855109013 215290.38810590695 162475.80452598046 200669.99948573206 0.6415663016498382 1.1586667427537893 1.2565361210893315 1.4339769100944142 1.3114988508890444 1.0783868870787725 1.1851342959115299 1.072857869425641 0.8096666414629295 1.0 17.61446542183822 1.4541167257042238 3.9749178393015656 0.9069898554734844 1.168983279717968 0.18614495918388785 0.20108940278425527 0.3315004167666326 9.962705685987025 0.14419139034062387 0.05318209777084254 28.452257184725134 -1.4541167257042238 0.2619934242444836 GPGEPDS(ph)PTPLHPPTPPILSTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPGEPDSPTPLHPPTPPILSTDR 23 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 GPGEPDS(0.96)PT(0.04)PLHPPTPPILSTDR 134.03 1.3342e-05 175560000.0 96746.0 138040.0 121620.0 126460.0 106890.0 128820.0 133710.0 98428.0 122000.0 106640.0 True False 96225.13028549105 142634.57795305797 138743.0388600095 142469.82303376414 120501.80791333335 119914.97660966234 127241.93647819711 105773.19716725659 91934.73471624512 99834.14390090262 0.9638499067113356 1.4287153911455377 1.3897353494384508 1.427065104852129 1.207019995413051 1.2011419332517375 1.274533255921942 1.0594891991285986 0.9208746739742806 1.0 16.607245690222857 1.63154356863978 2.457928390932891 0.9585218927692866 1.2856242470860633 0.48929794686047046 0.13124158351893359 0.2054880698126299 2.8016371170214587 0.09153450024754473 0.03604058157157739 42.809836447422 -1.63154356863978 0.3271023543167767 GPGGRPPPPPDT(ph)PPLSPDGPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPGGRPPPPPDTPPLSPDGPAR 22 1 Q9Y5W3 Q9Y5W3 KLF2 Krueppel-like factor 2 1 GPGGRPPPPPDT(0.788)PPLS(0.212)PDGPAR 95.794 0.00061602 0.0 133420.0 175270.0 164220.0 185240.0 162180.0 167550.0 159410.0 130630.0 134820.0 126060.0 True False 132701.68154435555 181103.75599704785 187340.74857417183 208691.36500691483 182832.66168382842 155967.6628702755 151698.72929466315 140378.27392569935 101595.41749544397 118014.74287460429 1.1244500332077727 1.5345858626280136 1.5874351289586708 1.768349952926291 1.5492357753818602 1.3215947352950455 1.2854218515380704 1.1894977738065935 0.8608705575318962 1.0 16.84860757252809 1.8190755069016038 1.1370033137366304 0.940971303133852 1.5208434523070187 0.6325962571748418 0.16497189999615047 0.311354871612484 0.7452734506041198 0.1409329719155929 0.05814139392102506 65.92885098836845 -1.8190755069016038 0.5798721491731667 GPGGSQGSQGPS(ph)PQGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR 272.14 1.3203e-35 269370000.0 233500.0 259803.0 238793.0 269388.0 268568.0 295117.0 280509.0 245359.0 327304.0 283638.0 True False 232242.861944289 268450.38580076984 272412.97877403576 303492.4931790262 302768.54287274915 274716.256420693 266939.70802155894 263668.93448775704 246644.31484890063 265535.98000529094 0.8746191832069667 1.0109755589258407 1.0258985572072297 1.1429430134966228 1.140216639819268 1.0345726270888758 1.0052863947712096 0.9929687663513747 0.9288545938067833 1.0 18.018547833237534 -3.2344856975801712 9.876855566088713 1.000172987433526 1.0214201028596455 0.0 0.07799362045552537 0.0 0.0 0.0 0.01821747254381908 0.000582792967332283 3.2344856975801712 0.021247115426119567 GPGPTVKPSGHLFFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPGPTVKPSGHLFFR 15 1 F5GXQ0;Q5VW32-2;Q5VW32 F5GXQ0 BROX BRO1 domain-containing protein BROX 0 160.47 1.0256e-06 710100000.0 431260.0 500120.0 509930.0 509220.0 548890.0 582290.0 550700.0 506550.0 603580.0 544390.0 False True 428938.1440774899 516766.1918710761 581723.7116089846 573687.1997884965 618787.8879740823 542037.662863222 524060.53712170554 544351.3332087804 454835.79655763233 509646.5641242719 0.8416384496077911 1.0139697355932105 1.1414257498401137 1.1256569555693285 1.2141510048975772 1.0635560033542222 1.0282822921061014 1.0680957579771815 0.8924533756823787 1.0 18.959137570638184 -0.28806797651599814 6.361511123046977 1.000000852006339 1.053864172878818 0.0059294107609298985 0.1059003178591067 0.0 5.425074372813884e-18 0.10365773694181461 0.024432362923861826 0.5151480064229993 0.28806797651599814 0.053863320872479026 GPGQPSS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPGQPSSPQR 10 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 GPGQPS(0.116)S(0.884)PQR;GPGQPS(0.005)S(0.995)PQR 71.085 0.054591 167410000.0 321340.0 341750.0 361860.0 341770.0 293620.0 340320.0 320600.0 298180.0 349600.0 315110.0 True False 319609.94114423014 353124.94215776224 412806.7426564954 385038.0469575324 331010.76657791185 316794.4794271099 305091.35318906634 320431.7057273605 263445.7643999944 294999.4100207561 1.0834256960776376 1.1970360962176718 1.3993476889579215 1.3052163288409329 1.122072639245692 1.0738817389662585 1.034210045259413 1.0862113443034174 0.8930382755052235 1.0 18.17035254361983 2.9373888544880384 2.4725115705558895 1.026806350141421 1.2522371864335877 0.5825708277373314 0.09048773761434331 0.2254499642826788 2.7302820509952372 0.03127443092513277 0.03508436142826807 865.7427323955826 -2.9373888544880384 0.22543083629216665 GPGQVPTATSALSLELQEVEPLGLPQAS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 8 GPGQVPTATSALSLELQEVEPLGLPQASPSR 31 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GPGQVPTATSALSLELQEVEPLGLPQAS(0.823)PS(0.177)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.842)PS(0.158)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.806)PS(0.194)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.796)PS(0.204)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.801)PS(0.199)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.59)PS(0.41)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.933)PS(0.067)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.963)PS(0.037)R 238.45 5.1727999999999985e-46 5474375000.0 2063577.6 2444084.0 2325234.0 2495313.0 2384156.0 2433758.0 2358629.0 2023734.7 2244896.0 2185382.1 True False 2052467.5274866256 2525433.8584600235 2652606.7359037586 2811219.3699497953 2687764.134600258 2265518.037910095 2244533.1044322303 2174756.0596305844 1691671.4608652457 2045909.1433782508 1.0032056086799366 1.2343822142023233 1.2965418061154539 1.3740685303883275 1.3137260485390676 1.107340492241616 1.097083471031371 1.062977829034763 0.8268556139653006 1.0 20.9643106472969 1.938135266816778 1.2352611169595193 0.9349463598972829 1.2464565875166214 0.5532189840778061 0.10837685366993656 0.35327735931645243 0.9962912568814428 0.0857274109130282 0.03812050433563924 86.72319446695701 -1.938135266816778 0.31151022761933844 GPGS(ph)PPRT(ph)PPAPGPPSFEEQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPGSPPRTPPAPGPPSFEEQLR 22 1 A0A6E1YH78;Q6ZTN6-2;Q6ZTN6;Q6ZTN6-3 A0A6E1YH78 ANKRD13D Ankyrin repeat domain-containing protein 13D 2 GPGS(1)PPRT(1)PPAPGPPSFEEQLR;GPGS(1)PPRT(1)PPAPGPPSFEEQLR;GPGS(1)PPRT(1)PPAPGPPSFEEQLR;GPGS(1)PPRT(1)PPAPGPPSFEEQLR 146.28 1.9853e-07 2890570000.0 994870.0 1137590.0 1042670.0 1130760.0 1063880.0 1150930.0 1119880.0 946060.0 1140230.0 1158150.0 True False 989513.7304604491 1175453.9954623226 1189468.8729498948 1273914.100060565 1199358.8118892058 1071368.9180977999 1065707.126042955 1016659.8011953398 859235.5947992137 1084235.875457901 0.9126369573802856 1.0841312504678908 1.0970572915672534 1.1749418451243903 1.106178866644387 0.9881326954297033 0.9829107763039838 0.9376740100635186 0.7924803211628983 1.0 20.048247218391392 2.1861198513798303 1.5276425791415158 0.9040103181956003 1.0794139749208538 0.4327389630997246 0.07999584429133492 0.3648847672337378 1.65552739396161 0.047562243497940505 0.027097409364629964 153.50405464219963 -2.1861198513798303 0.1754036567252535 GPHHLDNSS(ph)PGPGSEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPHHLDNSSPGPGSEAR 17 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 1 GPHHLDNS(0.286)S(0.714)PGPGSEAR 131.56 1.7097999999999998e-05 305300000.0 262780.0 330400.0 275900.0 307400.0 322460.0 340940.0 292980.0 139080.0 363000.0 307400.0 True False 261365.22167760244 341397.16426898265 314744.3218342098 346316.8084815681 363523.36962983926 317371.6202864326 278807.4381077126 149458.85583392993 273543.51395079517 287781.46882161946 0.9082072683408567 1.186306976842198 1.0936921099297856 1.2034020463500783 1.2631924186027705 1.1028216013559737 0.9688165094484614 0.519348436318433 0.9505251157097622 1.0 18.13461416971202 2.007318694807322 5.109163716211885 0.7625412789933992 1.1321327005410957 0.43111517448030967 0.1515490268408032 0.12778751514152004 9.91784518492781 0.06073001758177145 0.04088616176481925 101.69947121192875 -2.007318694807322 0.36959142154769653 GPHHLDNSSPGPGSEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPHHLDNSSPGPGSEAR 17 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 0 ;;; 151.44 1.4457e-07 454623000.0 267044.0 337300.0 346072.0 360139.0 368003.0 340152.0 312621.0 178114.0 347465.0 310794.0 False True 265606.2647753779 348526.82659784425 394795.92948825227 405732.5604741161 414866.0007253288 316638.0928716801 297498.3279018061 191405.7711245659 261836.90654246014 290958.8608358699 0.9128653583958267 1.1978560322809637 1.3568788671844467 1.3944671054475641 1.4258579358384105 1.0882572607070244 1.022475572825483 0.6578447914412822 0.8999104058568697 1.0 18.150455656904505 2.2161861898255157 2.380284571366949 0.822884393172859 1.2633779026549883 0.5207493361802726 0.16308596722549856 0.21088195115702993 2.429483293102881 0.07611831879712234 0.05158733343103131 164.50768459729682 -2.2161861898255157 0.4404935094821293 GPHVDVSGPDIDIEGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPHVDVSGPDIDIEGPEGK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 267.55 1.161e-31 1721180000.0 2120060.0 1944920.0 1718910.0 1628100.0 1664270.0 2337690.0 2148120.0 1954720.0 2754900.0 2216510.0 False True 2108645.8325208076 2009655.4864710325 1960917.5869664452 1834217.293067148 1876204.9195988718 2176090.9926303467 2044207.2289847038 2100591.1322670393 2075991.8087687192 2075050.434150317 1.0161901599197742 0.9684851285525201 0.9449975550928686 0.8839386565648538 0.9041731654908582 1.0486930615358288 0.985136166014084 1.0123084710117807 1.0004536634883228 1.0 20.984714970947262 2.7400868675939667 24.998444592714492 1.00823608360293 0.9417097415212574 0.44718319057583067 0.036519743081128125 138.88697805714204 2274841.284417425 0.012261686960401239 0.01239736859116186 549.6508040317655 -2.7400868675939667 -0.06652634208167263 GPIAQWADGAIS(ph)PNGHRPQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPIAQWADGAISPNGHRPQLR 21 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 GPIAQWADGAIS(1)PNGHRPQLR;GPIAQWADGAIS(1)PNGHRPQLR 202.46 3.8483e-22 1377650000.0 731120.0 861220.0 858990.0 893800.0 853580.0 794170.0 784470.0 695180.0 699480.0 719370.0 True False 727183.7311550687 889885.1870815158 979928.3255250735 1006954.9883566209 962278.3534349619 739270.8971750932 746522.1891335818 747057.8616525126 527102.5265517965 673459.1907163571 1.079774010332482 1.3213646785857163 1.4550671206710029 1.4951982276543365 1.4288591895395897 1.0977218922333398 1.1084891251383886 1.1092845297097642 0.7826792385016212 1.0 19.361231000473435 2.216850489078142 1.2272363901301946 0.9582483180634837 1.3620319548613888 0.6010285857362254 0.13744629001453568 0.3449271190464406 0.9990518123350051 0.09497810566629034 0.05307949096554398 164.7595090126379 -2.216850489078142 0.4037836367979052 GPIKFNVWDTAGQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPIKFNVWDTAGQEK 15 1 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 ; 228.51 5.3539e-13 4253600000.0 2823340.0 3681800.0 3453500.0 3576800.0 3473800.0 4333000.0 4709800.0 3604000.0 6865900.0 4639500.0 False True 2808139.4511425663 3804346.487304905 3939722.781639885 4029622.513262429 3916167.8391742655 4033469.9087848635 4481968.980816789 3872948.7807411808 5173890.943346447 4343403.137924214 0.6465297744580587 0.8758907166796096 0.9070589711648883 0.9277569650576469 0.9016358175414195 0.9286427671350183 1.0319025976849108 0.8916853116683359 1.1912067056752962 1.0 22.05039443371903 5.738311116492078 0.5104424207560938 0.9968217255808649 1.3221846565622469e-40 0.620243127801378 0.08025416612398355 7.874730368177439 0.7240457432002405 0.041863986239816395 5.852586306846034 547407.9703158624 -5.738311116492078 -0.9968217255808649 GPIVESYIGFIESYRDPFGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPIVESYIGFIESYRDPFGSR 21 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ; 176.11 7.5245e-13 530030000.0 380030.0 550440.0 462180.0 524520.0 556430.0 492210.0 463600.0 418410.0 559600.0 541780.0 False True 377983.9607053019 568761.0626519932 527250.9266594239 590924.1782197524 627288.0622810003 458184.68123771064 441173.8968760171 449633.87884292984 421694.0782558262 507203.1365588062 0.7452319070220845 1.1213674002705027 1.0395261556082536 1.1650641244629594 1.2367590361071659 0.9033553781751659 0.869816972878413 0.8864966449015608 0.8314106279327673 1.0 18.952204141609407 2.5244148899604233 21.130639996298058 0.8867184055397441 1.0694964376474165 0.2895394534901229 0.12728850596893643 82.89170943143966 37035.23005104938 0.04081718535453715 0.03847919477535585 334.5144555916258 -2.5244148899604233 0.1827780321076724 GPKPEPPGS(ph)GSPAPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 GPKPEPPGS(0.5)GS(0.5)PAPPR;GPKPEPPGS(0.5)GS(0.5)PAPPR;GPKPEPPGS(0.603)GS(0.397)PAPPR;GPKPEPPGS(0.607)GS(0.393)PAPPR 102.98 0.00089319 1417120000.0 1172750.0 1347410.0 1235680.0 1218680.0 1263440.0 1398990.0 1322190.0 1155280.0 1453220.0 1342910.0 True False 1166436.044304774 1392257.7273234534 1409653.0032768985 1372964.763045923 1424331.5950044151 1302281.1141682286 1258230.618443704 1241492.8599929716 1095093.4031503429 1257204.3340769056 0.9278014819772493 1.1074235822975507 1.1212600569913937 1.092077656615791 1.1329356385413845 1.0358547762440067 1.0008163226446016 0.9875028476612197 0.8710544288366683 1.0 20.261787720118242 2.0334807984166767 1.562806679420108 0.944858034132121 1.0804319694761402 0.42278136349619155 0.06265891042387384 0.35961320174106837 1.6464948378483835 0.039780261112956634 0.01980370032789713 108.0141863212015 -2.0334807984166767 0.13557393534401918 GPKPEPPGSGS(ph)PAPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 GPKPEPPGS(0.012)GS(0.988)PAPPR 153.36 2.7809e-07 2952700000.0 1632400.0 1735200.0 1457500.0 1432600.0 1475400.0 1773000.0 1768200.0 1491900.0 1928500.0 1829400.0 True False 1623611.3397766908 1792955.0830494494 1662703.3311828978 1613967.0131122144 1663283.4446190698 1650436.6831930683 1682665.4108200446 1603233.153714697 1453247.0155760546 1712646.12577186 0.9480133200575556 1.0468917402545115 0.9708388126201765 0.9423820769657406 0.9711775360887567 0.9636764176541404 0.982494506891607 0.9361146646638094 0.8485389910429403 1.0 20.70779565575215 1.5938574052411567 4.6975556345788885 0.91507704662854 0.9755938186245319 0.1905367660324251 0.04347523275020251 0.2030801073429865 9.851152534976027 0.02357860045542747 0.01069109479294951 39.25160368720411 -1.5938574052411567 0.060516771995991925 GPKPEPPGSGS(ph)PAPPRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPKPEPPGSGSPAPPRR 17 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 GPKPEPPGS(0.048)GS(0.952)PAPPRR;GPKPEPPGS(0.028)GS(0.972)PAPPRR 166.27 1.2351e-09 701920000.0 801390.0 839120.0 780940.0 753210.0 744740.0 879540.0 945010.0 821740.0 1152350.0 954210.0 True False 797075.4052827989 867049.6019412486 890889.5639478357 848566.3087716397 839578.2245801844 818739.4700144565 899296.2560112266 883062.4115111713 868368.7831988945 893311.5008597175 0.8922703944992295 0.9706016334803766 0.9972888103315015 0.9499108742638874 0.9398493400926548 0.9165218059170924 1.006699516513276 0.9885268583929765 0.9720783650083781 1.0 19.768803810346164 2.225022821018124 24.999947961637126 0.9911843686862138 0.9480445073682466 0.4053020491176218 0.027927483253583588 271.7083753955805 501754.3807404245 0.010811263497607453 0.008026735151051937 167.88922371194298 -2.225022821018124 -0.04313986131796721 GPLLVQDVVFTDEMAHFDR ddPTM_BT-474_Trastuzumab_2h_R1 10 GPLLVQDVVFTDEMAHFDR 19 0 P04040 P04040 CAT Catalase 0 ;;;;;;;;; 250.22 3.1256999999999995e-25 2156048000.0 1141348.0 1576989.0 1449621.0 1549618.0 1571039.0 1521836.0 1506717.0 1389133.0 1667038.0 1384529.0 False True 1135203.109183684 1629478.1255550198 1653715.0364683934 1745799.4799140878 1771101.5043723031 1416635.0593366106 1433831.3424921103 1492797.1583344447 1256218.8220647518 1296167.173865086 0.8758153516560541 1.2571512058093728 1.2758501139456595 1.3468937611714296 1.3664144101805895 1.0929416265899539 1.1062086522500942 1.1517010987734098 0.9691796300617529 1.0 20.30582037192344 2.591934474466578 9.744367853382462 1.0820427066457687 1.235837057483983 0.2505563080387273 0.1363688367083799 0.5948854131474823 46.938685467415134 0.044986873161489686 0.0423893150406542 390.781930902574 -2.591934474466578 0.15379435083821424 GPLLYCARPPQDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPLLYCARPPQDLK 14 1 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 128.9 6.4783e-05 422380000.0 274730.0 310170.0 272610.0 250610.0 247140.0 269290.0 297660.0 305020.0 432010.0 313560.0 False True 273250.8842053728 320493.82094827574 310991.1184314028 282337.2003043775 278611.8140864552 250674.61614047454 283261.0486283764 327782.1412601767 325546.9241374185 293548.33234777785 0.9308548340913144 1.0917923409238603 1.0594204911474674 0.961808224377449 0.9491173458835162 0.853946653811989 0.9649554005736483 1.116620689474198 1.1090062121413475 1.0 18.16323853517506 1.7536156007774995 11.954809103371794 1.0838579086858144 0.9750629372813896 0.3148556171975927 0.06860066021031137 0.19014580113091997 133.33862960934334 0.034741818082734605 0.019061838859183278 56.704248716166234 -1.7536156007774995 -0.10879497140442485 GPLMVNSNYYAMDLLYILPTHIQAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPLMVNSNYYAMDLLYILPTHIQAAR 26 0 P50416;P50416-2 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform 0 195.24 3.1069000000000003e-19 113370000.0 30783.0 47801.0 49207.0 42057.0 58605.0 62154.0 44373.0 38527.0 46571.0 44648.0 False True 30617.267748312806 49392.027388685296 56134.91788508868 47381.41188779862 66067.99937095045 57857.44027477833 42226.5084686788 41402.080376141945 35094.201069428294 41798.52641492405 0.73249634315771 1.1816691071446483 1.342987963926065 1.133566562070983 1.5806298699410861 1.3841980863258494 1.0102391660774421 0.9905153106392633 0.8396037870104915 1.0 15.351164461296868 2.101168348055228 6.325049727715777 0.9565328450491812 1.2404906221554304 0.2811064564905369 0.2090120616310762 0.28392307019668067 15.2892380519299 0.08228139229590094 0.060439533570534054 126.23167588328597 -2.101168348055228 0.28395777710624914 GPLPVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPLPVKR 7 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ; 87.58200000000002 0.030844 954100000.0 637900.0 854410.0 772380.0 799460.0 684190.0 814980.0 794920.0 749140.0 1043480.0 809030.0 False True 634465.6172773528 882848.5203482476 881124.390352689 900671.5540295198 771317.5409881514 758642.3508565632 756466.6827107052 805044.6308558414 786328.3359156338 757397.0127545688 0.8376922625689688 1.1656350704862508 1.163358681793763 1.1891670271498396 1.0183794337700847 1.0016442342404615 0.9987716745271016 1.0629096990071079 1.0381983592143373 1.0 19.530690205544715 GPLS(ph)PFNSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPLSPFNSR 9 0 A1L390-3;A1L390;A0A0U1RR71;G3V3I3;G3V278 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR 100.09 0.0051381 1281710000.0 1632350.0 1702370.0 1468610.0 1499260.0 1501770.0 1653900.0 1686190.0 1510570.0 2066210.0 1678270.0 True False 1623561.6089711355 1759032.3563456037 1675377.5226130455 1689066.1622774072 1693011.5078118334 1539569.7858618263 1604622.54782867 1623296.403919038 1557020.2312955162 1571161.3717607642 1.0333512764202237 1.1195745949216513 1.0663306473322272 1.075043081274656 1.0775541826836759 0.9798928445755168 1.0212970969559967 1.0331824808675427 0.9909995620313652 1.0 20.583399934732082 2.7556812575995635 24.591037933752528 1.010612101009504 1.076472766629208 0.667679995032223 0.02426487080162289 404.4272031934221 580893.0711868192 0.007187581022365765 0.007604755020801697 569.7459642847729 -2.7556812575995635 0.06586066561970405 GPLTEAELALFDPFSKEEGAAPS(ph)PTHVAELATMEVESAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVESAR 39 1 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 GPLTEAELALFDPFS(0.011)KEEGAAPS(0.494)PT(0.494)HVAELAT(0.002)MEVESAR;GPLTEAELALFDPFSKEEGAAPS(0.814)PT(0.186)HVAELATMEVESAR 139.93 5.8758e-13 66145000.0 34639.0 32117.0 30657.0 33618.0 32364.0 39468.0 39167.0 40639.0 46120.0 38675.0 True False 34452.50747275471 33185.994929863504 34973.239124579086 37874.035353068786 36485.36356354312 36739.67005767856 37272.342577530086 43671.68854066065 34754.343976337914 36206.728388666656 0.9515498639622726 0.9165698312651552 0.9659320430488364 1.046049644323126 1.0076956739058391 1.0147194096989642 1.0294313857199255 1.2061760474975878 0.9598863394466934 1.0 15.143970201470283 3.6083523806130233 0.7652201520575295 1.0710429284589222 0.9178647008417897 0.25242935168155756 0.0652135493209448 0.9633111515291455 1.0628540997037828 0.032598966288572645 0.09834346743523203 4058.3769305641567 -3.6083523806130233 -0.1531782276171325 GPNGYGFHLHGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPNGYGFHLHGEK 13 0 O14745;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 95.264 0.0027617 167840000.0 157750.0 180770.0 224180.0 147140.0 116240.0 194390.0 200320.0 37840.0 315280.0 141760.0 False True 156900.6915276727 186786.82017222728 255742.5953925086 165767.9089133959 131042.47499154155 180952.2768448398 190629.75630328656 40663.81294762663 237583.4685355552 132712.75543315787 1.1822578094740661 1.4074519028904073 1.9270385469565203 1.2490729197231278 0.9874143187204218 1.3634882061956604 1.4364086984788675 0.3064047070298934 1.790208241552309 1.0 17.017947513688902 3.486466877655671 23.346730561940078 1.0905154426707877 1.511150708353718 0.12861753878753912 0.4011565150102278 318.5799225514731 795858.6182160568 0.11064691156296456 0.15856495465490292 3065.256892513409 -3.486466877655671 0.4206352656829302 GPPASS(ph)PAPAPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GPPASSPAPAPK 12 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 GPPAS(0.006)S(0.994)PAPAPK;GPPAS(0.002)S(0.998)PAPAPK;GPPASS(1)PAPAPK;GPPASS(1)PAPAPK 207.95 7.6078e-08 607870000.0 5278460.0 4567500.0 4315090.0 4060940.0 3601050.0 4891880.0 4620490.0 4918850.0 6828250.0 4490600.0 True False 5250041.357852032 4719526.476387942 4922617.164565354 4575054.587622441 4059622.372404426 4553715.849846875 4396979.246714125 5285919.5644142 5145519.281362302 4204006.063403913 1.2488186930922651 1.1226259917823767 1.1709348393707104 1.0882607014886407 0.9656556891636399 1.0831848910702588 1.045902213365022 1.2573529830102768 1.2239561988633436 1.0 22.003333319413144 -0.334781566462714 6.8858937380820535 0.9999999992194221 1.1323048470616512 0.17011627744436764 0.0887628600501216 0.0 0.0 0.09183721685454531 0.02164623943977245 0.46261363988740073 0.334781566462714 0.13230484784222918 GPPDFS(ph)S(ph)DEEREPTPVLGSGAAAAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 P42166;P42167;G5E972;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 2 GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR 161.37 6.1e-12 10096900000.0 4125400.0 5137310.0 4586480.0 4891230.0 4718260.0 5352740.0 4927100.0 4378470.0 5422670.0 5400440.0 True False 4103189.3047750313 5308302.257780528 5232216.517601191 5510459.21649089 5319102.443681964 4982717.682794619 4688757.349650174 4705213.664820155 4086325.638555254 5055779.295650707 0.8115839447945934 1.0499473864191533 1.0348981258146033 1.089932707551401 1.0520835923865948 0.9855488919544135 0.9274054652036993 0.9306604164600045 0.8082484221711504 1.0 22.26950205498713 2.25881324409957 2.5610533769031907 0.9091449589495529 1.016396104449436 0.20972240091985916 0.08314579465582397 0.39890136252148223 5.3705973013379245 0.034991435232923446 0.02515375983621144 181.47351201096345 -2.25881324409957 0.10725114549988313 GPPDFS(ph)SDEEREPTPVLGSGAAAAGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 P42166;P42167;G5E972;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 1 GPPDFS(0.908)S(0.092)DEEREPTPVLGSGAAAAGR;GPPDFS(0.938)S(0.062)DEEREPTPVLGSGAAAAGR;GPPDFS(0.976)S(0.024)DEEREPTPVLGSGAAAAGR;GPPDFS(0.983)S(0.017)DEEREPTPVLGSGAAAAGR;GPPDFS(0.629)S(0.371)DEEREPTPVLGSGAAAAGR;GPPDFS(0.986)S(0.014)DEEREPTPVLGSGAAAAGR 301.69 6.7421e-71 19661000000.0 1778230.0 2228360.0 2045360.0 2111070.0 2261320.0 2367360.0 2150140.0 1966620.0 2388410.0 2289000.0 True False 1768656.2072599267 2302529.615527934 2333328.9094121754 2378331.2455471186 2549285.6981062707 2203709.9753660145 2046129.5138675552 2113379.170694015 1799818.3585543204 2142914.0602885056 0.8253509741878348 1.0744852806733365 1.088857902728042 1.1098584351193805 1.1896350606627006 1.0283706734694362 0.9548350779835193 0.9862174176081918 0.8398929252029858 1.0 21.031142562464296 2.3181828715887978 3.9424031584585655 0.948134630669569 1.0668438467604477 0.23178260862239208 0.09589137105065831 0.32648709937593984 9.81293509082972 0.03577317528427568 0.02879308391216281 208.05725847630413 -2.3181828715887978 0.1187092160908787 GPPDFSSDEEREPT(ph)PVLGSGAAAAGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 P42166;P42167;G5E972;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 1 GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(0.998)PVLGS(0.002)GAAAAGR 231.87 3.9528e-35 16573780000.0 4965450.0 7529520.0 7884250.0 6662600.0 8723870.0 10004120.0 6857650.0 5881460.0 8134330.0 7803070.0 True False 4938716.568913363 7780135.521509049 8994283.868870506 7506084.476868231 9834803.134071402 9312558.731565407 6525919.270733003 6320364.4106487315 6129733.365937657 7305071.392055677 0.6760668450529116 1.0650320994768112 1.2312383255626853 1.0275169226999146 1.3462980176712342 1.274807353928517 0.8933409299503892 0.8652022781765251 0.8391065654202627 1.0 22.800466941800092 2.160772932813535 10.64131934858154 0.8852510917794966 1.1150465495841124 0.2402394327253229 0.17638345328920635 0.5882916882082825 76.7396738482829 0.06809834851373955 0.05029652928191776 144.8014573454646 -2.160772932813535 0.22979545780461585 GPPDFSSDEEREPTPVLGSGAAAAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 P42166;P42167;G5E972;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 0 ;;; 268.31 1.6372999999999993e-53 2241140000.0 403343.0 532686.0 563968.0 556780.0 659960.0 674019.0 564379.0 502251.0 566530.0 542960.0 False True 401171.4461036202 550416.1314945137 643369.7923022686 627268.2909120597 744001.9941106137 627425.6530000614 537077.83163285 539731.5199989012 426916.2726130687 508307.82794855704 0.7892293292485366 1.0828401634417053 1.2657089994045505 1.2340323253403487 1.4636839198665852 1.2343419056366758 1.0565995684158627 1.0618202009147975 0.8398774308395551 1.0 18.9553429229206 1.7030488663953811 1.9111760398696827 0.932433802320647 1.1882700868628233 0.24340471417200193 0.16811188604868588 0.451720024028485 3.3928047483179866 0.1299083800140736 0.05148816170441149 50.471808475976204 -1.7030488663953811 0.25583628454217633 GPPHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPPHSK 6 0 O15355 O15355 PPM1G Protein phosphatase 1G 0 ; 103.28 0.034817 85465000.0 153468.0 143067.0 135213.0 136536.0 133954.0 102490.0 139597.0 125719.0 194299.0 167238.0 False True 152641.74533989787 147828.89860917215 154249.81510753545 153821.44360064864 151012.24789243756 95405.10753550907 132844.15979767314 135100.79016814657 146416.61492321081 156564.72766034462 0.9749433836147477 0.9442030834037907 0.9852143417779821 0.9824782752750841 0.9645355639748389 0.6093652699507341 0.8484935386332261 0.8629069407078557 0.935182637310561 1.0 17.256399700084653 2.9485913225181264 24.999972195698636 0.8385876678719124 0.9710599830487204 0.27896691989402 0.09470168280701512 413.11937476097853 200899.17562813856 0.028427085790840835 0.030151797022107497 888.3647601288679 -2.9485913225181264 0.13247231517680802 GPPPPPTASEPTRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPPPPPTASEPTRR 14 1 O14776;O14776-2 O14776 TCERG1 Transcription elongation regulator 1 0 ; 171.36 4.8558e-06 273020000.0 47986.0 64920.0 54645.0 60208.0 61990.0 57913.0 57537.0 50860.0 49845.0 54276.0 False True 47727.6487077458 67080.82295503127 62338.541017145326 67830.3266267347 69884.05905648375 53909.61062253819 54753.7154973153 54655.431461847 37561.36763878062 50812.05921197853 0.939297667678353 1.320175249642658 1.2268453981973146 1.3349257573632098 1.3753439663789329 1.0609609501877744 1.077573244353135 1.0756389784132667 0.7392215198774277 1.0 15.63288331159909 1.896846139733185 1.2182933668163771 0.9022221357749663 1.2376712535081844 0.4522056629749328 0.14080570324411135 0.4092679171518489 1.1228381801938112 0.10817249570943718 0.046711044476966425 78.85806926298378 -1.896846139733185 0.33544911773321806 GPPPSWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPPPSWGR 8 0 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 ; 120.49 0.0034711 709760000.0 209111.0 258800.0 261070.0 221642.0 218665.0 233960.0 217647.0 188115.0 259770.0 222272.0 False True 207985.16961041634 267414.00155209645 297826.38673888036 249701.85447453367 246510.6916210037 217786.8958826004 207118.58311771895 202153.0965286148 195753.16423966378 208086.41066336696 0.9995134662920665 1.2851103572770404 1.4312630305334584 1.1999911655859659 1.1846554075066336 1.046617581553302 0.9953489151811373 0.9714862968906182 0.9407301688544412 1.0 17.666823225628615 2.7097531217446216 1.7119959477489295 0.971661411367896 1.247471224393027 0.5757896098278061 0.10019411343759538 0.2567484792342225 1.5003802599392002 0.04058436061556667 0.0386848347887985 512.5699265855062 -2.7097531217446216 0.2758098130251311 GPPPTDPYGRPPPYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPPPTDPYGRPPPYDR 16 1 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 ; 91.789 0.0045526 2651000000.0 1081220.0 1394280.0 1307540.0 1481290.0 1319000.0 1308030.0 1328620.0 1213290.0 1516840.0 1397050.0 False True 1075398.8316548353 1440687.7669399425 1491630.266658582 1668821.1621199152 1486966.8316744964 1217608.964871422 1264349.574778719 1303831.8607617838 1143035.1066146651 1307889.0729253194 0.8222400920052955 1.1015366645105429 1.1404868329714644 1.275965367909458 1.1369212133171498 0.9309726566856542 0.9667100987018595 0.9968978927590082 0.8739541680381732 1.0 20.318808754864378 2.738242494438986 24.99988089766416 0.9582174595305109 1.1083021905907153 0.286060311102734 0.11090527727027402 38.535059052505716 3028175.9291154398 0.03622219399104836 0.03614402227012688 547.3214822466042 -2.738242494438986 0.15008473106020448 GPPQEEEEEEDEEEEATKEDAEAPGIR ddPTM_BT-474_Trastuzumab_2h_R1 7 GPPQEEEEEEDEEEEATKEDAEAPGIR 27 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 ;;;;;; 340.57 9.335099999999999e-96 14224390000.0 5172994.0 4700786.0 4106608.0 3957088.0 4228538.0 5227329.0 5170627.0 5091674.0 7079662.0 4947492.0 False True 5145143.175077661 4857248.8203248605 4684782.711123388 4458054.9350706255 4767017.249791661 4865976.050038883 4920504.018296691 5471640.568876682 5334974.1627105 4631738.824798993 1.1108448402854296 1.0486879774650624 1.0114522619540616 0.9625013636782715 1.0292068335693645 1.050572200657289 1.0623448783320009 1.1813361624754692 1.151829661496949 1.0 22.143122474035064 1.9474224518668832 5.850660878793175 1.129859299643649 1.0331867097601992 0.2428737701655319 0.05663609072295225 0.22809002828687974 17.655741826283162 0.024550105174951625 0.015158273790154086 88.5977008438453 -1.9474224518668832 -0.09667258988344973 GPPQS(ph)PVFEGVYNNSR ddPTM_BT-474_Trastuzumab_2h_R1 9 GPPQSPVFEGVYNNSR 16 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9 Q8WWM7 ATXN2L Ataxin-2-like protein 1 GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR 218.05 1.4366e-14 20328860000.0 9103727.0 8954670.0 8405438.0 8103515.0 7872312.0 9420329.0 8807718.0 8363681.0 10434260.0 9162463.0 True False 9054713.54535115 9252720.777737666 9588850.609023185 9129419.168127898 8874804.270351104 8769123.829299212 8381655.031589818 8987821.346131586 7862876.434920709 8577706.766960774 1.0556100588828343 1.0786939946906184 1.1178804393217416 1.0643193357101208 1.0346360060400617 1.0223156453745574 0.9771440385294938 1.0478116809437312 0.9166641677711092 1.0 23.03216056691545 2.9473561637128673 1.3420643386332969 0.9942328241276835 1.0845142005743682 0.5927610288091141 0.03427159876124261 0.31169958629769823 1.1635841158855331 0.013638359661926665 0.015616355139129968 885.8417884414673 -2.9473561637128673 0.09028137644668466 GPPS(ph)PPAPVMHS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 8 GPPSPPAPVMHSPSR 15 0 Q13573;G3V4X8;G3V3A4 Q13573 SNW1 SNW domain-containing protein 1 2 GPPS(1)PPAPVMHS(0.999)PS(0.001)R;GPPS(1)PPAPVMHS(0.884)PS(0.116)R;GPPS(1)PPAPVMHS(0.856)PS(0.144)R;GPPS(1)PPAPVMHS(0.645)PS(0.355)R;GPPS(1)PPAPVMHS(0.92)PS(0.08)R;GPPS(1)PPAPVMHS(0.997)PS(0.003)R;GPPS(1)PPAPVMHS(0.924)PS(0.076)R;GPPS(1)PPAPVMHS(0.749)PS(0.251)R 174.2 4.892100000000001e-07 17383020000.0 3877910.0 4333020.0 3938980.0 4175370.0 4076240.0 4282620.0 4271520.0 3784590.0 4811310.0 4139280.0 True False 3857031.7634363 4477241.951334099 4493554.1457720725 4703971.413889673 4595325.0022326335 3986572.559603101 4064890.258808976 4067015.323558623 3625627.118750964 3875107.606584099 0.9953353958178899 1.1553851933626123 1.1595946750322974 1.2138943976413124 1.185857392559843 1.0287643503962611 1.0489748083130446 1.0495231968909606 0.9356197264279192 1.0 21.8858049419897 2.722998917220899 21.03181671545484 1.0214396905056873 1.1477263922740786 0.5165538360617601 0.06219320899317183 87.0445509247168 117640.48225602022 0.02055088515066733 0.019482922163718698 528.4439342618679 -2.722998917220899 0.1262867017683913 GPPS(ph)PPAPVMHS(ph)PSRK ddPTM_BT-474_Trastuzumab_2h_R1 8 GPPSPPAPVMHSPSRK 16 1 Q13573;G3V4X8;G3V3A4 Q13573 SNW1 SNW domain-containing protein 1 2 GPPS(1)PPAPVMHS(0.909)PS(0.091)RK;GPPS(1)PPAPVMHS(0.5)PS(0.5)RK;GPPS(1)PPAPVMHS(0.986)PS(0.014)RK;GPPS(1)PPAPVMHS(0.833)PS(0.167)RK;GPPS(1)PPAPVMHS(0.97)PS(0.03)RK;GPPS(1)PPAPVMHS(0.987)PS(0.013)RK;GPPS(1)PPAPVMHS(0.989)PS(0.011)RK;GPPS(1)PPAPVMHS(0.837)PS(0.163)RK 119.87 7.7941e-05 6160380000.0 3064140.0 3244800.0 2819350.0 2887410.0 2928210.0 3445430.0 3466640.0 3227470.0 4234310.0 3472620.0 True False 3047643.0106979613 3352801.206476982 3216289.9737704927 3252955.8099471815 3301100.186639557 3207255.5337698227 3298945.3793491703 3468320.200160581 3190821.0373470825 3250994.4185404396 0.9374494749413398 1.0313155837352221 0.9893249755914599 1.0006033204472933 1.0154124435936782 0.9865459981963753 1.0147496287705897 1.0668490171440257 0.9814907768373308 1.0 21.632449648468118 4.747399394771268 24.40752767512138 1.012941439942116 0.9374494203368438 0.4406670075870247 0.024117054445590758 817.3391412552376 2256943.303852551 0.006136802383788079 0.07407317130550874 55898.40227483957 -4.747399394771268 -0.07549201960527219 GPPS(ph)PPAPVMHSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPPSPPAPVMHSPSR 15 0 Q13573;G3V4X8;G3V3A4 Q13573 SNW1 SNW domain-containing protein 1 1 GPPS(1)PPAPVMHSPSR 99.413 0.0085486 426570000.0 292490.0 318770.0 361420.0 299130.0 294450.0 364800.0 376140.0 329770.0 367370.0 391050.0 True False 290915.26633869373 329380.06674946554 412304.79448104487 336999.82732951 331946.4621581163 339582.23464683123 357944.6712056619 354379.1119381298 276836.58600579505 366092.8542052509 0.794648852052139 0.8997172792801843 1.1262301073210381 0.9205310168129373 0.9067275100977787 0.9275849849187265 0.9777428515580348 0.9680033572560426 0.7561922687804933 1.0 18.48185008827796 GPQAAAPPAS(ph)PEPFAHIQAVFAGSDDPFATALSMSEMDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMDRR 40 1 H7C2F7;Q8WVT3 H7C2F7 TRAPPC12 Trafficking protein particle complex subunit 12 1 GPQAAAPPAS(1)PEPFAHIQAVFAGSDDPFATALSMSEMDRR 98.885 4.2445e-05 37966000.0 20293.0 28521.0 23327.0 30901.0 25673.0 25249.0 25714.0 21887.0 27635.0 24510.0 True False 20183.744742764255 29470.3042436914 26611.238838081255 34813.06343164907 28942.304374207208 23503.596059752846 24470.115582980794 23520.319079934037 20824.724540028135 22945.75081593329 0.8796288648244569 1.2843469137313008 1.1597458305701938 1.5171899891580467 1.2613361230311093 1.024311483563754 1.0664334228710006 1.0250402904053928 0.9075634398316426 1.0 14.485939394000725 2.7313789525609824 19.369484030010547 1.012905026010471 1.2371125866077952 0.3332387585891834 0.1514752445085834 30.257993166498196 81605.97469937304 0.048727200575284645 0.0471328282354526 538.7396658325233 -2.7313789525609824 0.22420756059732416 GPQGPGGGGINVQEILTSIMGS(ph)PNSHPSEELLKQPDYSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDK 40 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 GPQGPGGGGINVQEILTS(0.001)IMGS(0.888)PNS(0.1)HPS(0.012)EELLKQPDYSDK;GPQGPGGGGINVQEILTSIMGS(0.973)PNS(0.014)HPS(0.014)EELLKQPDYSDK 311.63 8.133199999999994e-111 306410000.0 284950.0 252762.0 256945.0 261060.0 284310.0 363130.0 391340.0 336190.0 542170.0 424040.0 True False 283415.86086092156 261175.03037214448 293120.6225940236 294110.1692329149 320515.19326260465 338027.6778160742 372409.3891360235 361278.20493822935 408559.4682057914 396977.404161091 0.713934490704446 0.6579090588898133 0.7383811257808442 0.7408738284599362 0.8073890098100936 0.8515035724272726 0.938112308742142 0.9100724654636132 1.0291756254217441 1.0 18.59869736635799 2.630512567194691 0.5989584548134403 1.009589373226121 0.6727586772906542 0.9422876325244232 0.02905792847936389 0.16990434963822412 0.1277610445725264 0.022838653534230792 0.02303745107833331 427.0832777857619 -2.630512567194691 -0.3368306959354668 GPQGS(ph)PLLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 GPQGSPLLSR 10 0 Q8TEP8;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1;K7EPA2 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 GPQGS(1)PLLSR;GPQGS(1)PLLSR;GPQGS(1)PLLSR 103.14 0.004158 0.0 199354.0 244735.0 216919.0 212392.0 208539.0 230988.0 219022.0 198531.0 261565.0 214850.0 True False 198280.70021431166 252880.85652956818 247459.3097062521 239280.80542295735 235095.2055425074 215020.34324726468 208427.06911470887 213346.39133999095 197105.8105414317 201138.08905766095 0.9857938948473843 1.257249970477118 1.2302956186250336 1.189634477209147 1.1688248936038756 1.0690185248087152 1.0362386860250936 1.0606961234419912 0.9799526855648246 1.0 17.617826781795188 2.6281115962402914 2.3701207912718947 1.0280594679818227 1.1783612882008139 0.4878335248784944 0.07100920207406859 0.2561694481405367 2.8326821092899976 0.025464326320611567 0.02358665983767732 424.7286881409079 -2.6281115962402914 0.1503018202189912 GPQLFHMDPSGTFVQCDAR ddPTM_BT-474_Trastuzumab_2h_R1 7 GPQLFHMDPSGTFVQCDAR 19 0 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 ;;;;;; 223.23 2.2488000000000004e-19 8657910000.0 3330050.0 3859202.0 3805490.0 3883510.0 3918100.0 4132791.0 3928532.0 3489011.0 3946847.0 3737481.0 False True 3312121.3808033387 3987653.2056331295 4341269.914087962 4375161.967814753 4417046.810601847 3847100.885713571 3738493.8987103803 3749378.7176588723 2974199.4418902276 3498951.762761528 0.946603898931509 1.1396708145773053 1.240734428033852 1.2504207729807857 1.2623914560959015 1.0995009781664633 1.0684611141251616 1.071571994093367 0.8500258487538729 1.0 21.738491344760916 1.7147304234939702 1.3976697883950617 0.9377357946185072 1.1684030968071986 0.4349972538992366 0.09733986957658608 0.3819213280515651 1.4307422759914035 0.08183521945752664 0.03127550411683405 51.8478107818557 -1.7147304234939702 0.23066730218869136 GPQPPTVS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 6 GPQPPTVSPIR 11 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 GPQPPTVS(1)PIR;GPQPPTVS(1)PIR;GPQPPTVS(1)PIR;GPQPPTVS(1)PIR;GPQPPT(0.014)VS(0.986)PIR;GPQPPT(0.013)VS(0.987)PIR 166.62 2.1189e-05 5054870000.0 2287060.0 2520530.0 2536870.0 2402824.0 1979832.0 2465590.0 2500890.0 2083209.0 2967140.0 2751870.0 True False 2274746.7230762555 2604424.3173574395 2894039.2451306735 2707021.272032903 2231951.8698163615 2295149.5666745645 2379912.3963724375 2238668.6339009576 2235928.104639012 2576243.300605563 0.8829704564555534 1.0109388025367219 1.1233563400050028 1.0507630515318953 0.866359116505699 0.8908900669960303 0.9237917846552084 0.8689663097327585 0.8679025401496211 1.0 21.29683741743584 3.2392702958343618 24.9999763558758 0.8955783103950856 1.0241700903677047 0.4068718809156071 0.06686351323241434 17.316814965788012 610007.3739022359 0.01915755132143106 0.02446428817856656 1734.8834170971654 -3.2392702958343618 0.12859177997261906 GPRT(ph)PS(ph)PPPPIPEDIALGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPRTPSPPPPIPEDIALGK 19 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 GPRT(1)PS(1)PPPPIPEDIALGK 78.236 0.023889 188080000.0 67181.0 61152.0 54052.0 62318.0 67570.0 69873.0 60210.0 73772.0 88618.0 71536.0 True False 66819.30496051085 63187.407352835355 61662.051771593746 70207.45241039152 76174.63898123246 65042.8439733498 57297.41227546374 79277.24124662558 66779.28132036242 66970.5112349491 0.997742196204718 0.943510900359687 0.9207343744960829 1.0483338280648096 1.1374355306023127 0.97121617819466 0.8555618169682215 1.183763417431613 0.997144565405574 1.0 16.031238360789164 3.729698520932257 23.767549968475468 1.035837272910203 0.9529473304655754 0.1271085661935598 0.08657388782962891 604.2074812663132 1620447.0702290365 0.023689425695345552 0.03735501637458886 5366.591283540568 -3.729698520932257 -0.08288994244462755 GPS(ph)PAPAS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPSPAPASSPK 11 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 GPS(1)PAPAS(0.792)S(0.208)PK 95.264 0.011531 400660000.0 660560.0 536340.0 491010.0 491340.0 492760.0 607820.0 629260.0 580190.0 838440.0 644990.0 True False 657003.6183551147 554191.7526756228 560139.9400645726 553543.5936217754 555510.0651826569 565802.8340543777 598820.289793361 623486.7239451238 631817.6965203984 603826.1859962797 1.0880674498590934 0.9178001311109706 0.9276509582643767 0.9167267111949761 0.9199833959934945 0.937029309387824 0.991709706668883 1.0325599293386147 1.0463569006665954 1.0 19.20377379768086 2.018692758024627 3.1612049006652985 1.0283685140737773 0.9457480300702484 0.31702035740198775 0.049166289858116136 0.2758379115352059 5.492738124150156 0.02281429594900611 0.013878498446011644 104.3981392446447 -2.018692758024627 -0.08262048400352884 GPS(ph)PAPAS(ph)SPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 GPS(1)PAPAS(0.709)S(0.291)PKR;GPS(1)PAPAS(0.908)S(0.093)PKR 92.151 0.0052775 543660000.0 1857490.0 1690620.0 1520640.0 1575930.0 1508180.0 2046100.0 1952490.0 1874920.0 2640700.0 1913640.0 True False 1847489.480226542 1746891.2646986274 1734732.8943601777 1775442.576416255 1700237.783316786 1904657.92300132 1858040.5994638791 2014836.051050847 1989934.8685671184 1791509.8568503712 1.031247175761895 0.9750944199491108 0.9683077588029505 0.9910314306266984 0.9490529883580716 1.0631579367081312 1.03713668800599 1.124658088453447 1.110758537530793 1.0 20.77274455057309 2.6096803672375555 4.498735336123634 1.0787700143978962 0.9823527481076002 0.5336942538786874 0.03873720704257267 0.16271295639362196 5.233277564991198 0.01279375657852109 0.011968785564951328 407.08056370714417 -2.6096803672375555 -0.09641726629029601 GPS(ph)PAPASS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSPAPASSPK 11 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 GPS(1)PAPAS(0.006)S(0.994)PK;GPS(1)PAPAS(0.171)S(0.829)PK 137.39 0.00011601 1637040000.0 5208300.0 4459100.0 3918700.0 4102900.0 4103200.0 4940200.0 4952600.0 4634900.0 6652500.0 5142400.0 True False 5180259.091496529 4607518.447917124 4470418.898048995 4622326.719320186 4625718.198428195 4598695.601979918 4713023.81723072 4980779.773545312 5013080.513932951 4814207.629369858 1.0760356615891502 0.9570668327240827 0.9285887195177202 0.9601427846860882 0.9608472576480183 0.9552341643772957 0.9789822500546405 1.0346001163637508 1.0413095777900887 1.0 22.19886693369634 1.805110877217816 4.58305775037064 1.0283944974250023 0.9690831781758229 0.2711031755934473 0.03822507428799091 0.2528752142591691 9.304046997297501 0.01865049671333445 0.01024089948759239 63.84264583605797 -1.805110877217816 -0.05931131924917943 GPS(ph)PAPASS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 GPS(1)PAPAS(0.215)S(0.785)PKR 91.616 0.028687 989160000.0 2389900.0 2192000.0 2205900.0 2095100.0 2120300.0 2701200.0 2712400.0 2401900.0 3780900.0 2815400.0 True False 2377033.043942851 2264959.394908019 2516471.545973485 2360339.4451845586 2390307.6369972927 2514472.401940843 2581190.849625774 2581141.974601071 2849147.856464351 2635718.761614792 0.9018538239210866 0.8593327284737978 0.9547572307873055 0.8955202199716026 0.9068902463375317 0.9539987492445262 0.9793119384423205 0.979293395104004 1.080975670833257 1.0 21.329765008384204 2.1428905663255264 0.9398624316432007 1.0310991010668227 0.8996591781062965 0.7238951798123869 0.03185906583750225 0.2944045584868134 0.4865825472558084 0.024076949853257746 0.012760687535873148 138.9602434589498 -2.1428905663255264 -0.1314399229605262 GPS(ph)PEGSSSTESSPEHPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSPEGSSSTESSPEHPPK 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GPS(1)PEGSSSTESSPEHPPK;GPS(0.474)PEGS(0.361)S(0.044)S(0.023)T(0.028)ES(0.059)S(0.012)PEHPPK 195.05 1.1376e-15 2037170000.0 893360.0 1036460.0 977000.0 954520.0 948620.0 1134060.0 1045900.0 1037000.0 1314250.0 1174160.0 True False 888550.2490216275 1070957.9445466981 1114553.107763767 1075362.1341308607 1069421.13408875 1055665.1014900901 995305.8212739995 1114386.2057793026 990370.6975477467 1099224.1035510493 0.8083431268939256 0.9742853537208317 1.0139452948340537 0.9782919885552888 0.9728872671496007 0.9603729558692886 0.9054621510378629 1.0137934586580408 0.9009725081067173 1.0 20.06805411404798 4.739506305283662 24.655292538214574 0.9699472767026195 0.8083430661373311 0.6257851786861133 0.03723720498556709 40.304601775224064 1050602.2507213317 0.008439621925538248 0.051245776198945506 54891.65249675046 -4.739506305283662 -0.1616042105652884 GPS(ph)PEPPPS(ph)PLQVPTYPQLTLEVPQAPEVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 GPSPEPPPSPLQVPTYPQLTLEVPQAPEVLR 31 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 2 GPS(0.998)PEPPPS(0.978)PLQVPT(0.01)Y(0.012)PQLT(0.002)LEVPQAPEVLR;GPS(0.998)PEPPPS(0.982)PLQVPT(0.007)Y(0.012)PQLT(0.001)LEVPQAPEVLR;GPS(1)PEPPPS(0.998)PLQVPT(0.002)Y(0.001)PQLTLEVPQAPEVLR 76.274 0.0015289 110728200.0 28157.3 36909.8 34295.9 35552.2 35445.6 37535.8 31604.6 27924.5 31355.3 36503.1 True False 28005.704225370137 38138.320380554724 39124.46461469328 40053.10487475081 39959.38705746889 34941.038495769 30075.76475670353 30008.367987737834 23628.206454494106 34173.440906123804 0.8195166621442437 1.1160222491297451 1.1448792857052408 1.1720536127684287 1.169311196002749 1.0224618174024038 0.8800917893905739 0.8781195920590017 0.6914201739123081 1.0 15.06058789884933 2.295334116421831 2.8540303452123736 0.84989450373205 1.0948572205954181 0.4409500784742849 0.11801453220736546 0.2309357659279908 3.8557517038125764 0.047045557936950484 0.03567356209480185 197.39407669013136 -2.295334116421831 0.24496271686336812 GPS(ph)PRPPATAYDAPASAFGSSLLGSGGSAFAPPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSPRPPATAYDAPASAFGSSLLGSGGSAFAPPLR 35 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 GPS(0.999)PRPPATAYDAPASAFGSSLLGSGGSAFAPPLR;GPS(0.709)PRPPAT(0.288)AYDAPAS(0.003)AFGSSLLGSGGSAFAPPLR 207.76 4.8944e-28 844150000.0 139344.0 118511.0 116639.0 115023.0 84870.0 133296.0 125906.0 129173.0 144614.0 128668.0 True False 138593.78738657373 122455.56699358759 133060.75735563744 129584.90000642627 95677.6914360989 124081.56126503278 119815.44577237223 138812.54518720348 108975.81742832028 120456.2980817832 1.1505731920507485 1.0165974626785144 1.1046392714584048 1.0757835170930228 0.7942938058011629 1.0300960866387263 0.994679794086185 1.1523892681224306 0.9046917360380086 1.0 16.87815030158575 6.052087853392537 0.8078627458375536 1.0084167176097572 2.08892208726756 0.17817939954087825 0.09516087731641573 35.86754506118662 3.401011796666014 0.03295450463601248 56.06962254534282 1127425.4999144515 -6.052087853392537 1.0805053696578029 GPS(ph)PSPVGSPASVAQSR ddPTM_BT-474_Trastuzumab_2h_R1 5 GPSPSPVGSPASVAQSR 17 0 O14497;H0Y488;A0A1B0GTU5;O14497-3;O14497-2;A0A087WUV6 O14497 ARID1A AT-rich interactive domain-containing protein 1A 1 GPS(1)PSPVGSPASVAQSR;GPS(0.743)PS(0.257)PVGSPASVAQSR;GPS(0.967)PS(0.033)PVGSPASVAQSR;GPS(0.969)PS(0.031)PVGSPASVAQSR;GPS(0.998)PS(0.002)PVGSPASVAQSR 373.62 7.113599999999997e-105 6076540000.0 938040.0 1024825.0 915886.0 991847.0 904761.0 1068816.0 1032933.0 824430.0 990788.0 975478.0 True False 932989.6968660417 1058935.6806052052 1044834.7877761765 1117414.7285036363 1019976.950411409 994931.2656422366 982966.0846027506 885953.1529707144 746621.5732790094 913222.158891267 1.0216459245784995 1.1595597744702641 1.1441189612007432 1.2235957238053414 1.1168990376336814 1.089473416687755 1.0763712586608267 0.970139789475039 0.8175683934186119 1.0 19.80060634071722 1.763799044504445 1.93507291968918 0.9049473468058035 1.132526664519704 0.6575450439093968 0.06410703115016485 0.1778172799313561 1.324295606585201 0.043471817257600576 0.018279482560778455 58.0495750041064 -1.763799044504445 0.2275793177139006 GPS(ph)PTPEDVSMKEENLCQAFSDALLCK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPSPTPEDVSMKEENLCQAFSDALLCK 27 1 H1UBN3;O95067 H1UBN3 CCNB2V;CCNB2 G2/mitotic-specific cyclin-B2 1 GPS(0.967)PT(0.033)PEDVSMKEENLCQAFSDALLCK 73.126 0.011226 66008000.0 53088.0 42258.0 34296.0 35886.0 34399.0 53595.0 45015.0 40130.0 79313.0 55837.0 True False 52802.18010663131 43664.53198449957 39124.57869382407 40429.16392052552 38779.50875115314 49890.10379905954 42837.45247600063 43124.704376011025 59767.37388975039 52273.43485553924 1.0101149896224209 0.8353101743776569 0.7484600696691767 0.773417014440584 0.7418588209923955 0.9544064578295615 0.8194879979550701 0.8249831773096358 1.143360371380245 1.0 15.673790340573662 1.248099760277501 24.999471036418495 1.071680188943852 0.83263357907171 0.5339999166281497 0.08699123435757965 126.30446914568101 331015.04017296596 0.05919233276101627 0.02100414567072826 17.70515610603701 -1.248099760277501 -0.2390466098721421 GPS(ph)WDPFR ddPTM_BT-474_Trastuzumab_2h_R1 8 GPSWDPFR 8 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR 121.8 0.0014873 18199360000.0 19425240.0 24350860.0 19374130.0 20672380.0 18792270.0 20029460.0 21641330.0 18115420.0 18940570.0 19578570.0 True False 19320656.666187037 25161363.65469431 22101839.101043183 23289501.188413136 21185354.193989117 18644870.5744773 20594456.18999103 19467284.628638867 14272920.314135 18329048.900542933 1.0541003393588377 1.3727588262339676 1.2058366596636934 1.2706333708195445 1.155834888593787 1.0172306635029498 1.1235965543951925 1.062100097734052 0.7787049067075278 1.0 24.127628590183715 2.224345581379805 0.7657098689154059 0.9299265324133811 1.2372862132052733 0.5234695727848235 0.10735334548727092 0.521399639246156 0.58516835555809 0.085991157784202 0.05240567098161229 167.62762096316297 -2.224345581379805 0.30735968079189224 GPS(ph)WDPFRDWYPHSR ddPTM_BT-474_Trastuzumab_2h_R1 5 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR 105.79 0.0007797999999999999 2846508000.0 1793034.0 3039994.0 2357683.0 3217139.0 2770261.0 2414362.0 3001156.0 2082509.0 3059982.0 2713067.0 True False 1783380.504168806 3141178.3625748223 2689624.273051995 3624428.467539306 3123037.317726625 2247462.837736819 2855978.618750734 2237916.3963464303 2305890.4377580746 2539916.741286483 0.7021413242331372 1.2367249333471444 1.0589419051939806 1.4269871167916752 1.229582555585971 0.8848568936155228 1.1244378889774802 0.8810983289211725 0.907860639790156 1.0 21.276349775415394 2.737641511825807 24.99646552497136 0.9602313277958033 1.149210414956253 0.17291760009609913 0.18507537078905137 138.6599226377156 3771016.3241481474 0.05797019178850701 0.05758358031262934 546.5646151347596 -2.737641511825807 0.18897908716044964 GPSFDVQVGLHELLGHGSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GPSFDVQVGLHELLGHGSGK 20 0 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;; 273.87 1.0555000000000001e-44 978597600.0 506824.0 959444.0 1021020.0 1086676.0 1155477.0 1133017.0 1156731.0 550351.0 1028379.0 1068004.0 False True 504095.3158974398 991378.5135438541 1164770.7411350673 1224249.0701805984 1302620.1469012508 1054694.201625134 1100775.5023884631 591420.9862457525 774948.7750226024 999843.0703557745 0.5041744358122794 0.991534114639702 1.1649535568822882 1.2244412213058329 1.3028245987020133 1.054859740388901 1.1009482738093828 0.5915138122978709 0.7750704065457513 1.0 19.93134214993826 1.7537687133282864 24.999999999999286 0.7537425299506229 1.0680703053415697 0.21335873722613863 0.2239320052049339 6.787875288073009 11172.475900481933 0.10624536636525092 0.05891890860623179 56.72424358869227 -1.7537687133282864 0.3143277753909468 GPSFPEPLREEQDLER ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSFPEPLREEQDLER 16 1 A0A1B0GVZ4;A0A494C085;P06132;A0A1B0GVN9;H0Y5R6;Q5T446;A0A494BZY8;A0A494C0Q8;A0A494C1D8;A0A494C0S8 A0A1B0GVZ4 UROD Uroporphyrinogen decarboxylase 0 ; 127.32 6.0968e-05 675210000.0 314150.0 420310.0 383630.0 407160.0 386880.0 381910.0 388640.0 348570.0 369640.0 380510.0 False True 312458.65130534605 434299.76426724 437641.76942826353 458706.41425294476 436146.8747825847 355509.46061943844 369839.9984510247 374582.06340259576 278547.1749222367 356225.52602899936 0.8771371742740008 1.2191708132445422 1.2285525248761546 1.2876854148166874 1.224356041085835 0.9979898537380428 1.0382186885195785 1.05153066255028 0.7819405252265974 1.0 18.44243137368373 2.7273235315634796 22.102851445306783 0.9886218079125143 1.180339695094355 0.3662272522530271 0.12592712160465397 175.24848311967244 344704.0329956097 0.04086521429988697 0.03894990116909164 533.7323561216731 -2.7273235315634796 0.19171788718184068 GPSLNPVLDYDHGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 GPSLNPVLDYDHGSR 15 0 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;; 221.85 1.4799e-12 5085720000.0 2291916.0 3930710.0 4221680.0 4307510.0 4027120.0 4044620.0 4145250.0 3614500.0 3279210.0 3795270.0 False True 2279576.578911803 4061541.3061856325 4816055.848499625 4852840.324341052 4539949.861389681 3765024.939411363 3944728.4211072284 3884232.3440591022 2471092.634662769 3553052.619305879 0.6415825553850478 1.1431131878308889 1.3554698915324495 1.3658228133106283 1.2777603789826792 1.059659212181016 1.1102364202751005 1.0932099127813992 0.6954843903059109 1.0 21.76062762389523 1.3893684741021965 5.457918354940566 0.8501034691637293 1.1511726311893076 0.23219883719170042 0.20517982501365872 0.28885613880790173 12.534750412017583 0.1455692550242418 0.052542535288207064 24.511420140824555 -1.3893684741021965 0.3010691620255783 GPSPAPASS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 3 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 GPSPAPAS(0.291)S(0.709)PKR;GPS(0.006)PAPAS(0.329)S(0.665)PKR;GPSPAPAS(0.193)S(0.807)PKR 82.57799999999997 0.0089271 717662000.0 562752.0 524796.0 479277.0 438332.0 457623.0 554064.0 572879.0 498839.0 695666.0 534886.0 True False 559722.2057596246 542263.5176141189 546755.0356496366 493824.78625680745 515898.57650597213 515762.8598063642 545166.6541596968 536064.8992331167 524228.4357468144 500749.11754105653 1.117769729696494 1.0829045895815455 1.091874187086926 0.9861720549438984 1.030253590938527 1.0299825636019753 1.0887021765245517 1.0705258990080289 1.0468883865857892 1.0 18.93372844804791 3.9608067920335497 24.76190482422571 1.0430437192528759 1.0971002525531532 0.460941709183724 0.02984094445837455 478.9899135815426 302622.32354772015 0.00825205774251748 0.01488067073897781 9137.066632431277 -3.9608067920335497 0.054056533300277376 GPSPS(ph)PVGSPASVAQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPSPSPVGSPASVAQSR 17 0 O14497;H0Y488;A0A1B0GTU5;O14497-3;O14497-2;A0A087WUV6 O14497 ARID1A AT-rich interactive domain-containing protein 1A 1 GPS(0.139)PS(0.861)PVGSPASVAQSR 388.1 8.458799999999996e-122 961660000.0 168960.0 184370.0 197600.0 208170.0 171560.0 198590.0 197560.0 166110.0 197740.0 191000.0 True False 168050.33813322076 190506.6439959814 225420.36243001057 234524.300655849 193407.14908421275 184861.94073057635 188003.2680475105 178505.97168948894 149009.62658024835 178810.2164766729 0.9398251478273008 1.0654125236788938 1.2606682485584837 1.3115822198361042 1.0816336610690482 1.0338443986766994 1.0514123395854 0.9982985044524921 0.8333395569692615 1.0 17.448069642944358 2.0827860263098317 1.176784090912429 0.932682295856196 1.140691094247882 0.3568963515812862 0.10698670094874711 0.5614479222570364 1.4515716997069348 0.08326977679286889 0.04127160824109167 121.0001827682884 -2.0827860263098317 0.20800879839168607 GPSQEEEDNHS(ph)DEEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSQEEEDNHSDEEDR 16 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPSQEEEDNHS(1)DEEDR;GPSQEEEDNHS(1)DEEDR 231.89 5.9272e-16 919590000.0 494980.0 579670.0 466530.0 516580.0 504380.0 455580.0 496590.0 366580.0 429120.0 462860.0 True False 492315.0826774483 598963.9655320857 532213.3688485462 581978.9750338596 568609.8033055204 424086.82691996574 472568.04454197886 393936.0610555228 323369.12591340236 433319.8785256175 1.1361470061160444 1.382267454634384 1.2282228331167646 1.343070105655108 1.3122172129287735 0.9786922962383645 1.0905755031361688 0.9091114453274123 0.7462596154454637 1.0 18.72507289612045 2.4072912151712917 1.288330941207494 0.8897438719436995 1.2899766676468223 0.713232870780336 0.10525325104006554 0.2266274328278006 0.7539003293809734 0.05695753997900634 0.038724040541837514 255.44135846990986 -2.4072912151712917 0.40023279570312276 GPSQEEEDNHS(ph)DEEDRAS(ph)EPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 GPSQEEEDNHS(1)DEEDRAS(1)EPK;GPS(0.023)QEEEDNHS(0.977)DEEDRAS(1)EPK 238.35 9.1482e-30 1872080000.0 2322360.0 1777840.0 1625500.0 1476230.0 1652800.0 2065700.0 2008020.0 1846650.0 2879450.0 2123290.0 True False 2309856.6717984546 1837014.3296730234 1854356.2709007198 1663120.5666387281 1863274.2830868897 1922903.0211347586 1910884.4012186783 1984456.4000986984 2169848.1301532146 1987779.8143599753 1.162028437511919 0.9241538305209648 0.9328781072755711 0.8366724295236991 0.9373645258022837 0.9673621832978992 0.9613159301720469 0.9983280772662706 1.0915938045441222 1.0 20.92272652827474 1.5480916427532045 3.195211487747289 1.0464004774753488 0.9524045345263406 0.1477084538002339 0.07969405068129527 0.3618973308262186 8.23666133334785 0.054151804038353464 0.021015463244555513 35.32577046861024 -1.5480916427532045 -0.09399594294900826 GPSQEEEDNHS(ph)DEEDRASEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPSQEEEDNHS(1)DEEDRASEPK;GPSQEEEDNHS(1)DEEDRASEPK 229.6 7.484600000000001e-26 1110400000.0 399850.0 398350.0 360190.0 371040.0 359610.0 480060.0 422070.0 426300.0 628030.0 489160.0 True False 397697.2520275112 411608.8389423402 410901.6211723957 418013.62595641176 405404.2019245382 446874.5821396869 401652.86163602304 458112.6707075379 473260.421670848 457941.39000905416 0.8684457459057111 0.8988242773473744 0.8972799361164353 0.9128103182552402 0.8852753010958951 0.9758335714770214 0.8770835534828634 1.0003740231877278 1.0334519482099902 1.0 18.80480344010825 1.6430296125974884 4.998790798147692 1.0165621800091897 0.9046426318536182 0.7500061447839025 0.028869650380762415 0.07096689898127538 3.912992172573526 0.015299446879480264 0.007259149056969199 43.95715868356667 -1.6430296125974884 -0.11191954815557159 GPSS(ph)VEDIK ddPTM_BT-474_Trastuzumab_2h_R1 4 GPSSVEDIK 9 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 GPS(0.018)S(0.982)VEDIK;GPS(0.038)S(0.962)VEDIK;GPS(0.026)S(0.974)VEDIK;GPS(0.024)S(0.976)VEDIK 118.28 0.0010649 1360650000.0 3144450.0 2842510.0 2460730.0 2389760.0 2408520.0 3118820.0 3196930.0 2951670.0 4379070.0 3201740.0 True False 3127520.6305812416 2937121.2270164206 2807179.3949514152 2692303.370972386 2715230.745583517 2903223.314312582 3042282.2824414256 3171938.603676565 3299906.8750317 2997402.21205248 1.0434103965112052 0.9798889235506429 0.9365374402086636 0.8982122453058522 0.9058613270737046 0.968579826437304 1.014972989013114 1.0582292195963152 1.100922279219938 1.0 21.515281256912562 2.1002354268776964 2.411294668652822 1.0579359303450813 0.9496666145016693 0.49791607284223527 0.04450785074786262 0.24346991781276367 2.774679962250827 0.02318590379905872 0.014093027421776974 125.96080482068422 -2.1002354268776964 -0.10826931584341193 GPSSVEDIK ddPTM_BT-474_Trastuzumab_2h_R1 3 GPSSVEDIK 9 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ;; 114.89 0.0036388000000000006 1287240000.0 1741270.0 1705480.0 1508720.0 1496360.0 1468320.0 1795770.0 1831960.0 1816640.0 2538630.0 1776820.0 False True 1731895.1957932857 1762245.8708155705 1721134.6619706755 1685799.0225747505 1655301.8485855174 1671632.6466878823 1743341.0960331936 1952206.9015110065 1913018.6523991928 1663421.8263878634 1.041164164326323 1.059410092413122 1.0346952496758661 1.0134525084569075 0.995118509524443 1.0049361022981458 1.048045100994542 1.1736090452475563 1.1500502290229841 1.0 20.66572263672763 1.915397211585061 6.464679399540425 1.1244648816521734 1.0250623129089405 0.3760321162694785 0.046417537754147316 0.20028133721184294 12.636876209324887 0.01951366749516315 0.011989160815949586 82.29950281692246 -1.915397211585061 -0.09940256874323294 GPSWDPFR ddPTM_BT-474_Trastuzumab_2h_R1 6 GPSWDPFR 8 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ;;;;; 102.0 0.011746 8208990000.0 8174990.0 13928000.0 13047670.0 8790310.0 5003470.0 6142370.0 10948540.0 6008580.0 14992000.0 7505200.0 False True 8130976.762166775 14391585.0603462 14884668.523619302 9903162.34470922 5640632.246609852 5717762.41948371 10418917.292715598 6456970.750551013 11297422.482507754 7026211.7104750145 1.1572348083455446 2.0482709108936374 2.118448623093512 1.4094597135388205 0.8027985035236734 0.8137759941049592 1.4828641267929024 0.9189832325895689 1.6078966800366994 1.0 22.74431561714133 3.491455640795227 7.217190362764913 1.1003120519630976 1.7977327544673507 0.4305814376486268 0.3454895584700802 0.13661055967114008 38.22922580461399 0.09159672083083414 0.13446195740282993 3100.6706672397036 -3.491455640795227 0.6974207025042531 GPSWDPFRDWYPHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ; 215.48 1.4031e-12 6332600000.0 2004680.0 4383500.0 3450000.0 4357400.0 3766900.0 2613400.0 4479200.0 2964100.0 4029300.0 3153100.0 False True 1993887.0256208852 4529402.147618291 3935730.0120624336 4909046.39322571 4246592.386834466 2432741.809281875 4262523.983794342 3185296.1933948235 3036333.0048538223 2951866.458495273 0.6754665407991655 1.53441973453202 1.3333021894454837 1.6630313268738175 1.438612635952097 0.8241368108914982 1.4440097625443336 1.0790786907814733 1.0286146231701845 1.0 21.49319602513153 2.780182309891885 24.997700217271692 1.1106236395221767 1.3591806133147077 0.15630475527519416 0.2847204541345712 936.9133558913192 562702.1136437047 0.08463591372600947 0.08976914516499436 602.8125840698999 -2.780182309891885 0.24855697379253106 GPTEQLVSPEPEVHDIER ddPTM_BT-474_Trastuzumab_2h_R1 4 GPTEQLVSPEPEVHDIER 18 0 P35813;P35813-3;P35813-2 P35813 PPM1A Protein phosphatase 1A 0 ;;; 178.72 8.7336e-14 1828250000.0 808090.0 1000140.0 901920.0 906780.0 929010.0 948500.0 944780.0 783530.0 985610.0 931000.0 False True 803739.3332272389 1033429.0553026021 1028902.4963708252 1021578.255025752 1047313.9168263254 882932.4275288363 899077.3819899131 842000.9872847224 742719.6219973633 871582.7829307993 0.9221606357626422 1.185692369722559 1.1804988768949978 1.172095496873602 1.201622998224689 1.013021877921765 1.0315455968125713 0.9660596833422929 0.852150405610218 1.0 19.733278172467404 2.2195245773844507 1.489468796890349 0.9373424895185111 1.1373818647131424 0.4640115493822794 0.0866305036178918 0.34466243794925344 1.4963536264668362 0.049930357103471414 0.029185439255936113 165.77711499819748 -2.2195245773844507 0.20003937519463133 GPTSS(ph)PCEEEGDEGEEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSSPCEEEGDEGEEDR 18 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPTS(0.03)S(0.97)PCEEEGDEGEEDR 379.24 3.7662999999999995e-108 480580000.0 188900.0 230620.0 197430.0 200710.0 194750.0 203010.0 186270.0 167300.0 191390.0 201370.0 True False 187882.98338876324 238296.0472872663 225226.42790767716 226119.86542074 219550.25812631383 188976.39653413702 177259.40847949867 179784.77553218638 144224.4989946076 188518.39419846938 0.9966294492778398 1.2640466639896781 1.194718578339693 1.1994578374282372 1.1646092099382863 1.0024294835398686 0.9402764607303126 0.9536723262288752 0.7650420512428626 1.0 17.524345772064546 2.5608751040606594 1.9888916278509963 0.9116140145898842 1.176883952398269 0.656946376781788 0.08534598423714868 0.19193350925013147 1.519332903981492 0.0326915761209804 0.028370090279531506 363.8103952044127 -2.5608751040606594 0.2652699378083848 GPTSS(ph)PCEEEGDEGEEDRT(ph)SDLRDEAS(ph)SVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 GPT(0.058)S(0.202)S(0.74)PCEEEGDEGEEDRT(0.501)S(0.501)DLRDEAS(0.463)S(0.419)VT(0.116)R 69.462 0.0079807 395230000.0 174760.0 210790.0 172910.0 195910.0 218330.0 181780.0 182720.0 163480.0 207020.0 189630.0 True False 173819.1115776613 217806.0177247542 197254.22503933762 220712.18591289507 246133.03135670378 169213.9764640924 173881.1355418156 175679.7077346194 156002.6949258777 177527.65104958907 0.9791100741208374 1.226885031357251 1.111118318037331 1.2432552597186295 1.3864489835893288 0.9531696919530896 0.9794594504787602 0.9895906733174008 0.8787515297112856 1.0 17.437684225393504 2.698140784862976 24.912102567749855 0.9636710352890748 1.1900951210353359 0.5601504919845988 0.10151299234163201 375.0975657351385 231184.92891424362 0.03274502965149203 0.030872659794793027 499.0462366243162 -2.698140784862976 0.22642408574626105 GPTSS(ph)PCEEEGDEGEEDRT(ph)SDLRDEASS(ph)VTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 GPT(0.029)S(0.151)S(0.821)PCEEEGDEGEEDRT(0.5)S(0.5)DLRDEAS(0.321)S(0.511)VT(0.168)R 150.41 7.2244e-08 378590000.0 90029.0 114640.0 89109.0 103700.0 104000.0 102090.0 92849.0 91774.0 108650.0 94243.0 True False 89544.29386716233 118455.72309865645 101654.77265068718 116828.40936739951 117243.7835437055 95032.75859401029 88357.53915237558 98622.64189892935 81874.66333540999 88228.33105450828 1.0149154222563843 1.342604146342442 1.1521783472010132 1.3241598018579976 1.3288677473823143 1.0771229315818993 1.001464474011046 1.1178114866300641 0.9279860828924336 1.0 16.42895437443373 2.5853558974207704 5.468871070175619 1.0320936169166808 1.23852170346048 0.5117832841161107 0.10205745007173624 0.18982866424828976 8.05707063044005 0.03212045177267869 0.030073863485504965 384.9070780664696 -2.5853558974207704 0.2064280865437993 GPTSS(ph)PCEEEGDEGEEDRT(ph)SDLRDEASSVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 GPT(0.023)S(0.132)S(0.846)PCEEEGDEGEEDRT(0.624)S(0.376)DLRDEASSVTR 162.1 3.4718e-12 532810000.0 72039.0 111810.0 102420.0 118880.0 92044.0 107620.0 110740.0 92246.0 86698.0 104940.0 True False 71651.1500282854 115531.52825942764 116839.84574940108 133930.19581095886 103765.25781246943 100180.4827102301 105383.08313211835 99129.86493569681 65332.43959368046 98242.63935634588 0.7293284310938778 1.1759815189855747 1.1892987252266236 1.363259341243541 1.0562140684768442 1.019725074230297 1.0726817176589956 1.0090309623719775 0.6650110381980527 1.0 16.584061699776694 1.4627019330816815 4.3537327548570905 0.8289763108077056 1.0979093259573283 0.2540366775663109 0.16953127844995108 0.24356467963013625 9.160710558179192 0.11295553844996953 0.043253918852636235 29.020302365349174 -1.4627019330816815 0.26893301514962265 GPTSS(ph)PCEEEGDEGEEDRTS(ph)DLRDEAS(ph)SVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 GPT(0.02)S(0.129)S(0.851)PCEEEGDEGEEDRT(0.275)S(0.725)DLRDEAS(0.554)S(0.444)VT(0.001)R 214.28 6.980500000000001e-35 397690000.0 96365.0 126160.0 130290.0 137840.0 120000.0 120000.0 115660.0 109090.0 135140.0 109300.0 True False 95846.18154715805 130359.15933466966 148633.69949901855 155290.5298669463 135281.28870427547 111704.68244961546 110065.08393589313 117230.84974779577 101836.55778322424 102324.38042356208 0.9366895861026655 1.2739794640833424 1.452573657262946 1.5176298084985795 1.3220826565896748 1.0916722093720432 1.0756486721960996 1.1456785691008318 0.9952325864244812 1.0 16.64279040569315 2.727722534175158 6.445647869992813 1.0771708552455612 1.3200120164336744 0.3850665928132434 0.14938627642077895 0.1755669340086033 36.55120765937751 0.05042047967828585 0.04953844024635519 534.222941358918 -2.727722534175158 0.24284116118811316 GPTSS(ph)PCEEEGDEGEEDRTSDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSSPCEEEGDEGEEDRTSDLR 23 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPT(0.015)S(0.112)S(0.873)PCEEEGDEGEEDRTSDLR 216.64 1.5246e-32 669090000.0 225030.0 273380.0 244310.0 275860.0 269150.0 257170.0 248210.0 218820.0 287920.0 259980.0 True False 223818.46348318356 282479.28803830006 278706.7244194124 310783.8477154367 303424.6571229644 239392.44321306376 236203.13404572092 235149.4595454458 216965.9739303383 243387.85381992412 0.919595863024375 1.1606137430641819 1.145113529887238 1.2769077948539578 1.2466713205313025 0.9835841824308272 0.9704803684266061 0.966151169233886 0.8914412552849305 1.0 17.89289764712691 2.6298442027859417 6.139501214195173 0.9589555389830461 1.1567046837833248 0.5069114377327992 0.09249189054492768 0.19982997124833718 9.737788831522149 0.031195041286343 0.029342463298794245 426.42651667053417 -2.6298442027859417 0.19774914480027872 GPTSTSIDNIDGT(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPTSTSIDNIDGTPVR 16 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 GPTSTSIDNIDGT(1)PVR;GPTSTSIDNIDGT(1)PVR 259.9 2.0646999999999998e-17 376850000.0 750690.0 816920.0 712440.0 684180.0 707820.0 750170.0 695600.0 731840.0 761150.0 712410.0 True False 746648.3684494991 844110.6883614312 812745.3593605085 770797.1178494446 797956.68142217 698312.513610234 661951.1705499513 786453.6170082199 573574.7813874593 666943.383875113 1.1195078720344742 1.265640695701831 1.2186122225821456 1.1557159670299368 1.1964384094881277 1.0470341718555753 0.99251478694315 1.179190971861392 0.860005204721939 1.0 19.347204772174457 2.725460979125562 5.651665188827527 1.0366343831786518 1.1953193804897113 0.5248415777279389 0.08225665392000885 0.15268405732989132 18.251336860967733 0.026057349369430965 0.02559023907664798 531.448247329622 -2.725460979125562 0.15868499731105956 GPTSTSIDNIDGT(ph)PVRDER ddPTM_BT-474_Trastuzumab_2h_R1 6 GPTSTSIDNIDGTPVRDER 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER 250.75 3.1172e-25 12375020000.0 6283110.0 7220160.0 6607880.0 7219500.0 7178660.0 7147730.0 6868950.0 6427130.0 7772470.0 6962750.0 True False 6249282.43387915 7460478.660921116 7538212.067277412 8133487.959767991 8092819.799748628 6653624.249046588 6536672.646562809 6906755.0769048445 5857048.914262084 6518381.33388981 0.9587169135669336 1.1445293361609936 1.1564545983349248 1.247777253761 1.241538257001494 1.0207479293139288 1.0028061127043766 1.0595813167597046 0.8985434595258515 1.0 22.636082323428763 2.6186088069215234 6.801873061845587 1.0037010744002923 1.155000647028272 0.45963686084043587 0.08306741690848556 0.2468391195514402 12.822554170878318 0.028043746816366375 0.026384022001797514 415.5361454620986 -2.6186088069215234 0.15129957262797977 GPTSTSIDNIDGTPVRDER ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTSTSIDNIDGTPVRDER 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 0 63.337 0.035712 457840000.0 130380.0 155760.0 121850.0 149740.0 146190.0 148390.0 158720.0 121820.0 138520.0 147470.0 False True 129678.04856657985 160944.37744109184 139005.42086081376 168697.0686468119 164806.42996398368 138132.14857248717 151042.10723071924 130910.82698942588 104383.60207290392 138058.3383445811 0.9392989233501796 1.1657707848068493 1.0068600167696413 1.2219259674541303 1.1937448468533771 1.0005346307132992 1.0940455248253953 0.9482283254973294 0.7560832856931242 1.0 17.074918499813638 1.61238674956989 3.4847697248519105 0.8706957097573828 1.0948995376981396 0.42530724055879765 0.10124354868933078 0.16233103716595193 4.633997096055242 0.06002326814051363 0.025659102117006633 40.96252784123021 -1.61238674956989 0.22420382794075688 GPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 GPTTGEGALDLS(0.001)DVHS(0.999)PPKS(1)PEGK 73.936 0.035015 70947000.0 114550.0 71564.0 62450.0 61741.0 55903.0 102720.0 84147.0 85636.0 149380.0 98657.0 True False 113933.27552770148 73945.96447864854 71242.41717486922 69557.40426955263 63021.91568695933 95619.20817687092 80076.48813724374 92026.59317079678 112567.30058944823 92360.62579549293 1.2335697657568412 0.8006221681778276 0.7713505247638301 0.7531066801514346 0.6823461312020983 1.035281077334764 0.8669981114522868 0.9963833871650484 1.2187801849534605 1.0 16.494990327769703 1.557084408836238 3.2069090547198664 1.1116129478591423 0.8639205955408427 0.2537853465091041 0.15789543646060727 0.267918989387551 6.213761092247942 0.10598121291186413 0.04161178091075222 36.06487313668555 -1.557084408836238 -0.24769235231829967 GPVEGYEENEEFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GPVEGYEENEEFLR 14 0 F5GYQ2;Q9UI30;Q9UI30-2;F5GX77 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 0 ;;; 289.59 4.5161e-43 2109780000.0 645404.0 921795.0 775350.0 859695.0 790860.0 841868.0 784758.0 741760.0 855836.0 847756.0 False True 641929.2165751252 952476.3893381553 884512.540536986 968532.2988534851 891571.3332055276 783671.6467041078 746796.2574733166 797113.8977809608 644926.685414856 793651.486279572 0.8088301070087065 1.2001192032073327 1.1144848284520281 1.2203496315413054 1.1233788994524259 0.9874254131089112 0.9409624632269004 1.004362634684425 0.8126069144507011 1.0 19.598146094656084 2.6206998679477707 3.862841604871889 0.9484055155634957 1.107392365890445 0.27913378006346456 0.11633344002869357 0.3036032028406538 7.989128102911013 0.038153175446056564 0.03570495807007417 417.54171236143435 -2.6206998679477707 0.15898685032694926 GPVS(ph)PSVSFQPLAR ddPTM_BT-474_Trastuzumab_2h_R1 8 GPVSPSVSFQPLAR 14 0 Q7Z434;Q7Z434-4 Q7Z434 MAVS Mitochondrial antiviral-signaling protein 1 GPVS(0.952)PS(0.048)VS(0.001)FQPLAR;GPVS(0.942)PS(0.038)VS(0.02)FQPLAR;GPVS(0.978)PS(0.022)VSFQPLAR;GPVS(0.998)PS(0.002)VSFQPLAR;GPVS(1)PSVSFQPLAR;GPVS(0.855)PS(0.145)VSFQPLAR;GPVS(0.983)PS(0.017)VSFQPLAR;GPVS(0.985)PS(0.015)VSFQPLAR 247.11 8.9831e-18 5106169000.0 2818002.0 4198200.0 4084719.0 4065815.0 3635955.0 3794258.0 3013584.0 2725507.0 2737495.0 2772669.0 True False 2802830.1903414577 4337934.549134512 4659811.930185978 4580546.762122601 4098972.317256287 3531969.875182608 2867805.4289111616 2928898.1721841167 2062876.0378036657 2595714.890618641 1.0797912361143234 1.6711906861622408 1.795194051175396 1.7646571195771474 1.5791304091488154 1.3606925352039831 1.1048229677596344 1.128358966837867 0.7947236598515707 1.0 21.307700497931073 2.288628287463864 1.475119358278733 0.974121409859285 1.6097737027075105 0.6475833231422519 0.19991843014378793 0.2584751554571194 1.1172095036248275 0.11415701980541253 0.07130497288035487 194.3695760773171 -2.288628287463864 0.6356522928482256 GPVSGS(ph)PDSMNASR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPVSGSPDSMNASR 14 0 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 GPVS(0.001)GS(0.816)PDS(0.183)MNASR;GPVSGS(1)PDSMNASR 203.05 1.6341e-08 340480000.0 302882.0 368516.0 352034.0 340121.0 343534.0 340786.0 322006.0 308549.0 318222.0 356592.0 True False 301251.3169653534 380781.83228737337 401597.3272656189 383180.28372660786 387281.01861445495 317228.2659439555 306429.3395976244 331574.49316007516 239800.45205633555 333833.99326622934 0.9023985664788439 1.1406322902045016 1.2029851224448223 1.147816853453343 1.1601006081654546 0.950257530217928 0.9179093375109046 0.9932316655831024 0.7183224503596224 1.0 18.348771341718617 2.652651200315279 4.873080160979567 0.9189445466789652 1.1193886607026846 0.464283484379008 0.10474566443972827 0.2043037750587202 8.379834175620726 0.03420661372142402 0.032267688674181734 449.4187632944588 -2.652651200315279 0.20044411402371942 GPVTIPYPLFQSHVEDLYVEGLPEGIPFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GPVTIPYPLFQSHVEDLYVEGLPEGIPFR 29 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 ; 288.98 1.2952999999999997e-73 1587340000.0 460740.0 574140.0 532980.0 597460.0 481360.0 549580.0 584050.0 478500.0 617820.0 515800.0 False True 458259.42703302664 593249.9028250409 608018.9512547919 673098.3747410455 542658.3427557504 511588.8281721641 555797.2702123327 514208.0997737668 465566.5393638574 482881.2024014024 0.9490106981884365 1.2285628429410114 1.2591481056439362 1.3939212613654863 1.123792643111954 1.059450700561539 1.1510020838423893 1.0648749572701806 0.9641430170579472 1.0 18.88130877781046 1.9195606035298176 0.9134408155087226 0.986632279376439 1.2010363512625977 0.3127560481505618 0.11177282918906384 0.6980910776482575 1.0746992547432699 0.09795377581509362 0.04523337495163375 83.09226615357254 -1.9195606035298176 0.21440407188615862 GPWALEEESLVGREPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GPWALEEESLVGREPEER 18 1 O00515;E9PDI4;A0A0J9YYF6;A0A0J9YW63 O00515 LAD1 Ladinin-1 0 ; 224.19 4.3229e-19 204490000.0 200344.0 254030.0 234700.0 283380.0 235390.0 248520.0 258780.0 220120.0 254800.0 250540.0 False True 199265.3701643111 262485.23498562246 267743.7199510295 319255.8789443944 265365.52123416157 231340.39735315365 246261.82276439958 236546.47214671198 192007.95414507584 234550.3227019145 0.8495634022962042 1.1190998671922952 1.1415192990004959 1.3611402246934043 1.131379902518444 0.9863145558199027 1.049931715836388 1.0085105380448969 0.8186215731158685 1.0 17.839537960178536 2.039261401259923 1.2277036806256756 0.9318518464219026 1.1251440916045135 0.24319708276621033 0.12857954094366283 0.6777750369575234 1.8996652902758107 0.09710221637059625 0.04659247693747744 109.46150153260744 -2.039261401259923 0.1932922451826109 GQAALDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQAALDR 7 0 P40429;M0QYS1;Q8J015 P40429 RPL13A;RPL13a 60S ribosomal protein L13a 0 80.098 0.09556 0.0 144020.0 185770.0 171320.0 173670.0 152470.0 135350.0 158460.0 142800.0 179830.0 178300.0 False True 143244.61232212622 191953.24214966354 195440.3668598655 195656.6041932137 171886.1507395074 125993.57307962872 150794.68442401543 153456.4611237074 135513.3060985438 166920.74134969024 0.8581594543846186 1.1499663888236125 1.1708572899902723 1.1721527391453606 1.0297471084160528 0.7548107686370669 0.9033909339529498 0.919337284766931 0.811842225254982 1.0 17.348803707646244 2.9510577432297147 7.059126021976546 0.879592236387636 1.0987056847484413 0.4821313994535683 0.10388772562307846 0.1997406429352239 24.353229857852906 0.031164940633806974 0.033465631993446696 893.424264365366 -2.9510577432297147 0.21911344836080537 GQAGASRPHAPGTPAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQAGASRPHAPGTPAGR 17 1 Q8TDD1-2 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 0 ; 104.44 0.00051095 57761000.0 64505.0 87734.0 82010.0 83980.0 87410.0 80287.0 68110.0 69068.0 86716.0 75263.0 False True 64157.712247179225 90654.17315367711 93556.29515630151 94611.85938933668 98541.14538033943 74736.94866526904 64815.25909453301 74222.20488019755 65346.00373486806 70459.65090410395 0.9105596099886769 1.2866111595849097 1.3277995839580903 1.3427807003770718 1.398547170130811 1.060705633739039 0.919891856727292 1.0534001223085032 0.9274244606151172 1.0 16.10450970649465 2.5552678747730653 5.773503137850226 0.9856528474698524 1.2631919340885387 0.5124281673990427 0.12902353829761942 0.18598723135555156 10.56840501710921 0.04289842603142294 0.04004677601019141 359.14338758437594 -2.5552678747730653 0.2775390866186863 GQAVDYEGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQAVDYEGSR 10 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 136.96 0.00024169 307160000.0 298950.0 406640.0 405420.0 413140.0 403050.0 412450.0 428880.0 328260.0 390510.0 404230.0 False True 297340.48641646776 420174.7665809293 462499.6120261889 465443.481639801 454376.0284354861 383938.3023028663 408133.43591929687 352756.42807050503 294274.043065909 378431.6953212857 0.785717713639255 1.1103054310083726 1.2221481914550791 1.2299273221410352 1.2006817453536078 1.0145511252087527 1.0784863978499333 0.9321534967387376 0.777614683717421 1.0 18.529673400238536 1.7307291171766337 2.383676049663082 0.8783496158061768 1.109300575840319 0.29754173364274716 0.13215941605960244 0.3123450249094675 3.710880630617618 0.08759759286989119 0.03800405234361688 53.79341517830677 -1.7307291171766337 0.23095096003414217 GQAVTLLPFFTSLTGGSLEELRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQAVTLLPFFTSLTGGSLEELRR 23 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 244.78 2.8988999999999997e-37 945460000.0 568470.0 719140.0 668840.0 714940.0 656210.0 686830.0 693040.0 566740.0 713900.0 665150.0 False True 565409.420682954 743076.1401706901 763006.8583385032 805451.3306955508 739774.4538386049 639351.0587239115 659515.0075301002 609033.0166474083 537968.9107698959 622699.5575364341 0.9079971453968344 1.193314064828467 1.2253210221590043 1.2934830624934623 1.1880118507958322 1.0267408270745448 1.0591223320268892 0.9780527531718597 0.8639301317287661 1.0 19.248176728535217 2.238012244767193 1.3913104487987162 0.9467378999041444 1.1704613725604784 0.42556195958525367 0.10367869464660992 0.40610746882445864 1.5357309485623212 0.06386051457212898 0.03733454181631384 172.98651314148154 -2.238012244767193 0.22372347265633408 GQDGIGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQDGIGSK 8 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 78.098 0.060662 0.0 185640.0 192700.0 161580.0 172480.0 180960.0 147130.0 195140.0 173570.0 241330.0 197100.0 False True 184640.53486654305 199113.90301039 184329.05952146277 194315.95031522735 204004.18336604757 136959.24940676597 185700.3326928081 186522.67477060144 181857.45515632327 184520.90925420015 1.000648303830858 1.0790858543629125 0.9989602818807213 1.0530836375162955 1.105588435427699 0.7422424372410166 1.0063918145828294 1.0108484481487332 0.9855655702725394 1.0 17.493424781064732 GQDHCGIESEVVAGIPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQDHCGIESEVVAGIPR 17 0 P07858;R4GMQ5 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain 0 ;;; 205.95 2.2792e-17 701810000.0 514515.0 799950.0 735490.0 857570.0 794550.0 678720.0 666450.0 561928.0 577373.0 568935.0 False True 511744.90840799065 826575.852170013 839040.5990063174 966138.2740713657 895731.2328331838 631801.6839350252 634211.2674137657 603861.9207725669 435087.16055182467 532625.0812102408 0.960797616299244 1.5518905912050773 1.5752930693759923 1.8139180976533962 1.6817293522826344 1.1862034031507367 1.190727379891121 1.1337466861313785 0.8168732113839088 1.0 19.02276084081046 2.5626115881888705 3.7168802522191324 1.0693048249224002 1.5371357663927092 0.4972934046108699 0.2285717858901096 0.2170434347690275 5.62069396176006 0.08132845510808508 0.0744991334161255 365.2679676251284 -2.5626115881888705 0.467830941470309 GQDIEYIEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQDIEYIEIR 10 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494BZX8;H7C0V2 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 132.91 0.00049099 230870000.0 256170.0 337260.0 320830.0 323700.0 311590.0 301840.0 332830.0 288700.0 362640.0 329360.0 False True 254790.8091831624 348485.4952220248 366000.0752956492 364680.3868102917 351269.1395613767 280974.51125493273 316729.7413659289 310244.2599888954 273272.23112704203 308339.96282071754 0.8263308033519775 1.1301989272945772 1.1870017494568414 1.1827217707175146 1.139226768881788 0.9112490923477983 1.0272095075463492 1.006175966134124 0.8862692614577974 1.0 18.234162358455155 2.746664997888828 24.94746737677006 0.974942536035114 1.1053534753283045 0.26502640445133396 0.10417566582334432 838.0483219236673 2579737.9807069306 0.03257814413090939 0.03399858338639022 558.0395732041567 -2.746664997888828 0.13041093929319048 GQDMETEAHQNK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQDMETEAHQNK 12 0 Q15363;F5GX39 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 0 121.56 0.00037412 299090000.0 344460.0 411160.0 495590.0 336240.0 353150.0 432090.0 421670.0 340680.0 464280.0 408950.0 False True 342605.4656331037 424845.2120485318 565364.7642544991 378807.94952453574 398121.5592159573 402220.63533045334 401272.2111641722 366103.27153798693 349864.4150332648 382850.4608802902 0.8948806404603746 1.1096896973081418 1.4767247842788351 0.9894410173976035 1.039887893305794 1.050594622259629 1.048117351724025 0.9562565778194537 0.9138409138357039 1.0 18.546421468482098 2.6331433096649355 0.9753084768836348 0.9625523473239442 1.1373089641944867 0.159163364315849 0.14302323461836536 0.9673634024509168 1.91417277132862 0.08827447455377056 0.07313360320566051 429.6781897423287 -2.6331433096649355 0.17475661687054245 GQDS(ph)PLLQRPQHLMDQGQMR ddPTM_BT-474_Trastuzumab_2h_R1 7 GQDSPLLQRPQHLMDQGQMR 20 1 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 GQDS(1)PLLQRPQHLMDQGQMR;GQDS(1)PLLQRPQHLMDQGQMR;GQDS(1)PLLQRPQHLMDQGQMR;GQDS(1)PLLQRPQHLMDQGQMR;GQDS(1)PLLQRPQHLMDQGQMR;GQDS(1)PLLQRPQHLMDQGQMR;GQDS(1)PLLQRPQHLMDQGQMR 271.6 1.2679e-44 5385270000.0 1065480.0 1103537.0 1087726.0 1135710.0 1218900.0 1048872.0 1132683.0 1001124.0 1183250.0 1111980.0 True False 1059743.574065956 1140267.561942796 1240868.3661161198 1279490.7695530318 1374119.6900136783 976365.9474191095 1077890.7960207462 1075832.956484667 891653.8922376801 1041012.4843860256 1.0179931460581646 1.0953447523881614 1.19198221416909 1.2290830213315427 1.319983872070578 0.9379003249850133 1.0354254268684115 1.0334486594742214 0.8565256474936177 1.0 19.989555939646237 2.717172204026242 24.96644340539493 0.9848144336988821 1.1710872906632992 0.5524944620024133 0.08886021301961632 686.091543189756 800865.8746880454 0.03047315935065088 0.028756127350304406 521.4014133031237 -2.717172204026242 0.1862728569644171 GQDSIPHHSDYDEEEWDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQDSIPHHSDYDEEEWDR 18 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 209.45 3.0159e-16 925210000.0 247520.0 400310.0 410040.0 474200.0 483210.0 425800.0 416710.0 172772.0 338890.0 337560.0 False True 246187.37982205715 413634.07635749504 467770.06786842865 534233.6713791784 544743.9292899418 396365.4482253861 396552.1453132117 185665.12395843954 255375.10039334657 316016.63180034445 0.7790329844968268 1.3088997056927818 1.4802071182252212 1.6905239079843775 1.7237824673547706 1.2542550243868338 1.254845806861674 0.5875169382722254 0.8081065193894273 1.0 18.269640963169742 1.8925705795677923 4.324361965894228 0.7685189884363821 1.3960508853986329 0.48298716063970226 0.2647717643244211 0.18867875616026528 5.594237234023854 0.13241034602034266 0.07591501676816717 78.08553308905881 -1.8925705795677923 0.6275318969622508 GQDSIPHHSDYDEEEWDRVWANVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQDSIPHHSDYDEEEWDRVWANVGK 25 1 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 133.58 3.7995e-05 216180000.0 85432.0 170770.0 175620.0 252930.0 225560.0 222480.0 260350.0 88841.0 258750.0 209090.0 False True 84972.0436043875 176453.97621735526 200345.76948359533 284950.9120665025 254283.72900113653 207100.48126158706 247755.8758664169 95470.76654545707 194984.52957236412 195745.69718904482 0.4340940558316552 0.9014449806625469 1.0235002473137782 1.4557199272242811 1.2990514358819218 1.058007834836728 1.2657027941060812 0.48772855759508477 0.9961114464960852 1.0 17.57862106950228 -1.7386954892547135 2.3877820871750135 1.0024591465807364 0.9894356752430054 4.014755638326317e-05 0.31038206397669554 85912384.4895879 49547668.4357721 1253165.0138512687 0.08137119829314815 0.01825174996944615 1.7386954892547135 -0.013023471337731074 GQDTPKPAGQHGS(ph)LSPAAAHTAS(ph)PEPPTQSGPLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQDTPKPAGQHGSLSPAAAHTASPEPPTQSGPLTR 35 1 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 2 GQDTPKPAGQHGS(0.679)LS(0.321)PAAAHTAS(1)PEPPTQSGPLTR 278.95 4.064799999999998e-74 862150000.0 230420.0 307520.0 347210.0 341070.0 297680.0 402580.0 438680.0 313040.0 358260.0 386820.0 True False 229179.44432206868 317755.61730023415 396094.1499965783 384249.42702930514 335587.7835124062 374750.5921713848 417459.3724796616 336400.63438491145 269971.6234380488 362132.81642673636 0.632860193625767 0.877456013060666 1.0937814305396227 1.061073201873278 0.9266980739932458 1.034842950354932 1.1527797358959277 0.9289426948495544 0.7455044425466124 1.0 18.46615939400398 4.637418245052636 3.1092802656284078 0.9966591207770329 0.6132581945144129 0.5111177323772618 0.10655909445945104 0.23433682123766603 3.611374412272556 0.02664230498869848 0.1891737659416408 43392.8569890393 -4.637418245052636 -0.38340092626262 GQDTPKPAGQHGSLS(ph)PAAAHTAS(ph)PEPPTQSGPLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GQDTPKPAGQHGSLSPAAAHTASPEPPTQSGPLTR 35 1 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 2 GQDTPKPAGQHGS(0.02)LS(0.98)PAAAHTAS(0.983)PEPPT(0.017)QS(0.001)GPLTR;GQDTPKPAGQHGS(0.149)LS(0.851)PAAAHTAS(1)PEPPTQSGPLTR;GQDTPKPAGQHGS(0.021)LS(0.977)PAAAHT(0.348)AS(0.65)PEPPT(0.003)QS(0.001)GPLTR 245.41 1.5541999999999995e-47 2307810000.0 481370.0 573720.0 645730.0 633300.0 585610.0 763450.0 761760.0 586990.0 681610.0 725080.0 True False 478778.3574052346 592815.9233789355 736643.1712142234 713475.7150662877 660183.9623175899 710674.4984679918 724910.7585942082 630794.1744748238 513636.34860606346 678804.7736277801 0.7053255604648573 0.8733231503525103 1.0852062328279364 1.051076454947736 0.9725682375351107 1.0469497653498931 1.0679223051423472 0.929271859865731 0.7566775729360352 1.0 19.372637184963985 4.563672726364616 3.4250416729786246 0.9907807235043528 0.7096252752028968 0.4821661458708698 0.09055212900838691 0.22202586177973047 4.5060850962520735 0.022889568525663262 0.12291826999461253 36616.154032747974 -4.563672726364616 -0.281155448301456 GQDTPKPAGQHGSLSPAAAHTAS(ph)PEPPTQSGPLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQDTPKPAGQHGSLSPAAAHTASPEPPTQSGPLTR 35 1 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 GQDTPKPAGQHGSLSPAAAHT(0.025)AS(0.969)PEPPT(0.006)QS(0.001)GPLTR;GQDTPKPAGQHGSLSPAAAHT(0.006)AS(0.994)PEPPTQSGPLTR 193.45 2.5666e-21 365054000.0 58294.0 79571.0 96963.0 98950.0 95565.0 111444.0 114931.0 100723.0 94496.0 105517.0 True False 57980.151581072234 82219.47263331477 110614.54758249546 111477.05985442807 107734.6362918675 103740.13859095788 109371.3484509436 108239.46172103059 71208.72698152695 98782.81472235141 0.5869457328588671 0.832325671873279 1.1197752148832716 1.1285066149183574 1.0906212441372212 1.0501840718199822 1.1071900386555429 1.0957317021716677 0.7208614897406308 1.0 16.591972457074505 4.518373036709841 2.943432239430922 1.0530931181721064 0.5901639537604716 0.6008951114094774 0.11506079615867366 0.17984112359641857 2.797687772361479 0.02810455608948166 0.15159993583359338 32989.29516600839 -4.518373036709841 -0.4629291644116348 GQECVEECR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQECVEECR 9 0 P04626-5;P04626-4;P04626;B4DTR1;J3QLU9;P04626-6;F5H1T4 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 87.258 0.031599 116770000.0 135930.0 172070.0 178830.0 164620.0 197460.0 214160.0 150620.0 131810.0 164930.0 169350.0 False True 135198.1679832429 177797.24593148867 204007.70958177524 185460.8751211312 222605.36056288562 199355.6232784136 143333.9351757239 141646.33151761815 124285.21144877306 158541.93801217043 0.8527596526091692 1.1214524570643265 1.286774415272473 1.1697906399182174 1.4040787147801699 1.2574314769831445 0.9040758361659544 0.8934313109427532 0.7839264046288644 1.0 17.274504991515403 2.228687891478471 23.587673129002614 0.8878509931653285 1.193589006087176 0.49192959515552304 0.14236295527670625 85.53182021150816 204347.51063606798 0.05501377232968224 0.04118048675998066 169.3120591124062 -2.228687891478471 0.30573801292184766 GQETSTNPIASIFAWTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQETSTNPIASIFAWTR 17 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ; 280.62 1.4579e-35 285960000.0 144471.0 201226.0 190967.0 193404.0 192983.0 174405.0 184604.0 174930.0 214516.0 184315.0 False True 143693.18418823718 207923.68576631436 217853.49368508003 217888.92656984113 217558.24115014356 162348.7928552099 175673.99926423677 187984.16487654156 161651.40616713132 172551.85889998943 0.8327536145033438 1.2049924416451887 1.2625392451514956 1.262744591445572 1.2608281506618813 0.9408695675038008 1.0180939248301981 1.0894357561543087 0.9368279611570225 1.0 17.396670490437714 2.735971974466506 24.946363123409473 1.0114673277195592 1.1778805783825805 0.3023403858594782 0.12566087139993173 296.46487561725826 2856975.192504196 0.04069992190174736 0.04001695994459948 544.4675165797948 -2.735971974466506 0.16641325066302137 GQFETYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQFETYLR 8 0 A0A1B0GV06;A0A1B0GTP7;A0A1B0GUE3;A0A1B0GUG1;A0A1B0GUW4;E7EMM4;A0A1B0GW68;A0A1B0GUA4;A0A1B0GTM3;A0A1B0GTZ5;A0A1B0GUH5;Q13510-3;Q13510;Q13510-2 A0A1B0GV06 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta 0 76.827 0.06375499999999999 0.0 220770.0 335420.0 341930.0 311970.0 262260.0 270290.0 280520.0 260160.0 317500.0 273300.0 False True 219581.3988498529 346584.2519343282 390070.7718911615 351465.3700129952 295657.25646319403 251605.48849422132 266950.1759095345 279574.46026571176 239256.37928203112 255857.76001609827 0.858216685849345 1.354597382203774 1.5245610368300682 1.373674849615198 1.155553212240237 0.9833803300646055 1.0433538380572795 1.0926948639279936 0.935114804674978 1.0 17.964982464544455 3.00460738189766 4.251477300863738 1.02752742467449 1.2996999726949159 0.3644495894409048 0.1643984412098729 0.22750947534111435 9.923885053350467 0.05114806966512596 0.058865710683968404 1010.6653626682502 -3.00460738189766 0.2721725480204258 GQFNFDHPDAFDNELILK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQFNFDHPDAFDNELILK 18 0 A0A2R8Y653;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 0 153.14 3.5387e-08 99416000.0 224240.0 213370.0 197260.0 207360.0 214630.0 251930.0 246820.0 197850.0 313670.0 288050.0 False True 223032.71675540585 220471.89146511143 225032.49338534346 233611.75473890002 241961.85828832246 234514.6720794304 234880.37365603657 212614.57166194308 236370.23146266091 269666.4023879879 0.8270689814540304 0.8175727102551809 0.8344847240612997 0.8662990742272242 0.8972636418392048 0.8696473494759565 0.8710034753165052 0.7884355254461386 0.8765282933636596 1.0 18.040816262500478 -2.8295467407303314 1.364559067961976 3.0673696070433465 0.8474366344249805 0.6763891104860227 0.031126647140057574 204279.12401840053 6150.037461548856 1302686.0337045875 0.00944994838608585 0.0014806528921516107 2.8295467407303314 -2.219932972618366 GQFQGRPVSVWDVLFSSYLSEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQFQGRPVSVWDVLFSSYLSEAR 23 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 195.97 2.9419999999999998e-24 306180000.0 75555.0 90951.0 104000.0 108600.0 93112.0 97730.0 117010.0 102330.0 134830.0 124760.0 False True 75148.22027494968 93978.24905395955 118642.29601579501 122348.74886499105 104969.26128193743 90974.15513167427 111349.77927839238 109966.38422121134 101602.95312943708 116797.70998759026 0.6434049116453924 0.8046240723721785 1.015792998239441 1.047526949612202 0.8987270494694665 0.778903585878013 0.9533558431087671 0.9415114751213465 0.8699053529408443 1.0 16.833652462508038 4.531518749329928 3.484334805255216 0.9339313478029502 0.653189430468999 0.606751623540972 0.07420887689586197 0.17392586038683805 3.9410120698341777 0.019236061685974633 0.09447920675483362 34003.11852889096 -4.531518749329928 -0.28074191733395115 GQFSTDELVAEVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GQFSTDELVAEVEK 14 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 215.51 1.5065999999999994e-11 119043000.0 239100.0 212800.0 191265.0 201070.0 208091.0 248410.0 237290.0 223760.0 283670.0 246430.0 False True 237812.71216650715 219882.91935968352 218193.4494948173 226525.44138382864 234590.15539801185 231238.00139424187 225811.3761641716 240458.1074302572 213763.329483256 230702.62642066233 1.0308192665864164 0.9531010668198888 0.9457779171398082 0.9818936390034112 1.0168508223667163 1.0023206279958137 0.9787984630587949 1.0422859555651818 0.9265751881536048 1.0 17.81567490282917 3.465870427515824 23.04240983942477 0.998977964265713 0.9724889480090964 0.03957693228871939 0.0351403024391009 188.3747742854013 385799.55921606475 0.009408344633660462 0.01275385012460842 2923.2800822284303 -3.465870427515824 -0.026489016256616593 GQFSTDELVAEVEKR ddPTM_BT-474_Trastuzumab_2h_R1 8 GQFSTDELVAEVEKR 15 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ;;;;;;; 287.88 2.2349999999999996e-34 19683780000.0 8066710.0 8562230.0 7654880.0 7968430.0 7804110.0 9247410.0 9751880.0 8496360.0 11926330.0 9572350.0 False True 8023279.729655739 8847218.649572656 8732620.566590283 8977232.420978473 8797917.14991603 8608158.312761651 9280144.308600718 9130401.52684188 8987245.776134392 8961434.427698852 0.8953119943450821 0.9872547437524992 0.974466826382021 1.0017628866680977 0.9817532249884675 0.9605781733061326 1.0355646055855485 1.0188549166437875 1.0028802697429509 1.0 23.095298247599732 6.0543087436812515 0.8983105281734023 1.0025766182393419 2.127167101740825e-19 0.6866695050017715 0.020405102579746082 11.80126828877799 1.14206811913024 0.00688239627722485 19.68713816682698 1133205.6826104831 -6.0543087436812515 -1.0025766182393419 GQGESDPLDHEPAVS(ph)PLLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQGESDPLDHEPAVSPLLPR 20 0 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR 232.0 3.8935e-26 6342020000.0 2053820.0 2600710.0 2506790.0 2839770.0 2642110.0 2606780.0 2549130.0 2190830.0 2657200.0 2563200.0 True False 2042762.4613208529 2687273.060187607 2859724.2425907175 3199284.590831821 2978567.04748711 2426579.4343000725 2425818.8432777417 2354320.859409325 2002368.664655792 2399614.3815340768 0.8512878056743901 1.119877043939714 1.1917432503311185 1.333249465185533 1.2412690432297326 1.0112372441895254 1.0109202803355897 0.9811246663325147 0.8344543523595966 1.0 21.19437115242996 2.5655044103802283 4.6359090285218745 0.9646342342016383 1.1582226780160758 0.34604381413599783 0.12461036110070754 0.27166218544755993 10.077442094572458 0.04413517457665744 0.04093948553298791 367.7091275468467 -2.5655044103802283 0.19358844381443752 GQGPRS(ph)PHK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQGPRSPHK 9 1 Q86U38;Q86U38-2 Q86U38 NOP9 Nucleolar protein 9 1 GQGPRS(1)PHK 62.166 0.05097 134660000.0 95937.0 105210.0 121350.0 88283.0 56632.0 76865.0 109480.0 71037.0 216540.0 114020.0 True False 95420.48585160273 108711.85124921185 138435.02520689138 99459.6187481401 63843.749515837735 71551.50347074754 104184.03414578584 76338.1416585769 163176.61848734174 106743.14598256676 0.8939261155670526 1.018443388083827 1.2968984934124064 0.9317658556211543 0.5981063133202451 0.6703147336732356 0.9760255160813898 0.7151573148410336 1.5286847411635374 1.0 16.703783911266946 3.4920791578137544 24.725595331163202 0.8715410208981327 1.072909326225435 0.05254392229566618 0.261561404793927 1356.3432617648148 2242048.5117574227 0.06955714351017034 0.10373823833359332 3105.1255003317424 -3.4920791578137544 0.20136830532730232 GQGPRS(ph)PHKVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQGPRSPHKVGR 12 2 Q86U38;Q86U38-2 Q86U38 NOP9 Nucleolar protein 9 1 GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR 63.062 0.038272 266350000.0 120525.0 202002.0 186245.0 218750.0 216690.0 216130.0 251360.0 178508.0 406970.0 262880.0 True False 119876.10679158643 208725.5144572122 212466.67712944 246443.72757105742 244284.18707774533 201189.44181529485 239200.7565115523 191829.17340525723 306677.6966186085 246102.7733371087 0.4870977484978665 0.8481233739341183 0.863325001374144 1.0013854140257155 0.9926104601150826 0.8175017253450774 0.9719547377221056 0.7794677435125523 1.2461366950892705 1.0 17.908901390083958 5.019282196441911 1.4339093588324598 0.9452478636188049 4.311361290459222e-11 0.5762803480949862 0.12172644958699128 1.7346126838310554 1.9300817405762554 0.031370056722711155 2.841629074000684 104539.92795007867 -5.019282196441911 -0.9452478635756912 GQHHQQQQAAGGSESHPVPPT(ph)APLTPLLHGEGASQQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPR 38 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 GQHHQQQQAAGGSESHPVPPT(0.797)APLT(0.203)PLLHGEGASQQPR 132.41 6.674399999999999e-09 288800000.0 46522.0 40752.0 40589.0 38092.0 52086.0 53941.0 37518.0 15077.0 41389.0 42789.0 True False 46271.53072108011 42108.405684895784 46303.57839408752 42914.44329433926 58718.843362090774 50212.18563345595 35703.11100732184 16202.122299454724 31189.235534185806 40058.169386494046 1.1551084692522409 1.0511814775812744 1.1559084976484013 1.0713031561748858 1.4658394095734273 1.2534817841772223 0.8912816425245694 0.40446487065176295 0.778598623248658 1.0 15.289808872657842 2.04395696002143 4.738385590726902 0.6568671477333721 1.1875287109578045 0.579477740536452 0.17731650869696086 0.11828998702779141 5.993582964353269 0.0710850585797816 0.04966986984739191 110.65141194391715 -2.04395696002143 0.5306615632244325 GQHHQQQQAAGGSESHPVPPTAPLT(ph)PLLHGEGASQQPR ddPTM_BT-474_Trastuzumab_2h_R1 5 GQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPR 38 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 GQHHQQQQAAGGSESHPVPPT(0.011)APLT(0.989)PLLHGEGASQQPR;GQHHQQQQAAGGSESHPVPPT(0.002)APLT(0.998)PLLHGEGASQQPR;GQHHQQQQAAGGS(0.001)ES(0.001)HPVPPT(0.008)APLT(0.772)PLLHGEGAS(0.219)QQPR;GQHHQQQQAAGGSESHPVPPTAPLT(1)PLLHGEGASQQPR;GQHHQQQQAAGGSESHPVPPTAPLT(1)PLLHGEGASQQPR 321.76 1.9705999999999997e-110 5849710000.0 832955.0 798421.0 933995.0 1012888.0 1166410.0 1106403.0 848048.0 428816.0 848563.0 973372.0 True False 828470.4628300001 824995.9603293139 1065493.377569928 1141119.5169462531 1314945.3996462834 1029919.9648025172 807024.6783820374 460816.42740352737 639446.0188116478 911250.5656143037 0.9091576939340511 0.9053447991806263 1.1692649835028024 1.2522565801393903 1.4430118885685803 1.130226969031525 0.8856232400119234 0.5056967257879023 0.7017235905698191 1.0 19.797488279359182 2.074187862619652 3.7619246362618624 0.6826621832539733 1.1443420793726664 0.477321744654041 0.18687583224020693 0.1790235030309487 5.014287485824028 0.08325287402736807 0.056676389347622834 118.62817867147929 -2.074187862619652 0.4616798961186931 GQHPNPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQHPNPLR 8 0 M0R1K3;Q15102;M0R389;M0QZT2 M0R1K3 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 ;;; 85.212 0.016903 1379160000.0 490270.0 613440.0 634960.0 586270.0 463990.0 536980.0 616850.0 428036.0 699550.0 557760.0 False True 487630.44079411775 633857.9795676892 724356.8488287416 660491.7218883826 523076.37621580705 499859.8365149543 587010.6089041645 459978.2198427668 527155.2759897475 522163.27927764 0.9338658234809332 1.2139076122789936 1.3872228813769056 1.2649141525273588 1.001748680871298 0.9572864587614428 1.1241897548143067 0.8809087848519339 1.009560221697346 1.0 18.99414147925957 3.2279689164379004 23.56108772073928 0.9894055666590158 1.2143472651482523 0.40993663025701377 0.11947962126755918 96.39184259941247 214421.8382418243 0.03540598998017207 0.04279078005528025 1690.3199468103417 -3.2279689164379004 0.2249416984892365 GQICWYQKPGVGLDAINDANLLEACIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQICWYQKPGVGLDAINDANLLEACIYR 28 1 P14324-2;P14324;A0A087WVN4;A0A087X090 P14324-2 FDPS Farnesyl pyrophosphate synthase 0 ; 290.02 3.5473999999999985e-71 408970000.0 430850.0 518970.0 484510.0 542830.0 470650.0 584880.0 513160.0 489150.0 669380.0 598410.0 False True 428530.3514719347 536243.6027260106 552724.7965635847 611552.2223423854 530584.4877388946 544448.622259426 488336.4903384312 525652.856853371 504420.2682324603 560218.9614754237 0.7649336794015923 0.9572035928839856 0.9866227931805416 1.091630709413633 0.9471019801641808 0.9718496868180542 0.871688614488023 0.938298938452534 0.9003984208317247 1.0 19.09563128891601 4.738232611704375 7.173092298276032 0.9603008101295623 0.762347650884371 0.5255981801949279 0.05634605916028704 0.08974340291572447 38.55675280327674 0.014367617113720308 0.08652803361882007 54730.90276296609 -4.738232611704375 -0.1979531592451913 GQIQEAIALINSLHPELLDTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQIQEAIALINSLHPELLDTNR 22 0 Q9NWU2 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog 0 ; 232.82 5.5906e-28 310580000.0 176857.0 308680.0 331020.0 420340.0 314670.0 297910.0 357240.0 229570.0 214678.0 272740.0 False True 175904.82156265975 318954.2271989996 377624.73872258107 473555.0009015689 354741.3593047862 277316.182904708 339958.93641067384 246701.67913283937 161773.48343782005 255333.49969553828 0.688921828794146 1.2491671777472333 1.4789470992755116 1.8546528421309374 1.3893255672592224 1.086094003471468 1.3314309983454722 0.9661939362716151 0.6335771985686173 1.0 17.962023305852245 1.6222154850468706 3.3260016778986734 0.8090250801886307 1.3207330239441575 0.3192679332198436 0.2906811031405351 0.23297859730997234 6.087682009724935 0.19113539694634007 0.08141257060895084 41.900141059308325 -1.6222154850468706 0.5117079437555268 GQKPALDCS(ph)QVSPPRPATSPENNASLSDTSPMDSSPSGIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 1 GQKPALDCS(0.217)QVS(0.213)PPRPAT(0.213)S(0.213)PENNAS(0.053)LS(0.06)DT(0.015)S(0.015)PMDSSPSGIPK 54.75899999999999 0.011698 959400000.0 29441.0 32981.0 46272.0 33147.0 36278.0 51968.0 38196.0 41382.0 59019.0 51798.0 True False 29282.49292720262 34078.752647564485 52786.695396565985 37343.406801361525 40897.78826344757 48375.5744795135 36348.31355711033 44470.13497353818 44474.55826408251 48492.207293501095 0.6038597655489081 0.7027676105008258 1.0885603758367262 0.7700908844041479 0.8433888772254068 0.997594813259754 0.7495702007770166 0.9170573470574529 0.9171485635805028 1.0 15.565465304121204 4.439242444000166 10.935080538082284 0.896030527825119 0.6284712612678164 0.5207199400411504 0.09988530005835933 0.34226744459918135 97.52151831845383 0.022649269949379883 0.06228031361342143 27494.285876121412 -4.439242444000166 -0.26755926655730267 GQKPALDCSQVS(ph)PPRPAT(ph)SPENNASLSDTSPMDSSPSGIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 2 GQKPALDCS(0.203)QVS(0.774)PPRPAT(0.447)S(0.417)PENNAS(0.077)LS(0.069)DT(0.006)S(0.006)PMDSSPSGIPK 80.22 0.001641 739280000.0 102690.0 105730.0 99800.0 91813.0 78517.0 131110.0 132730.0 115320.0 155560.0 140340.0 True False 102137.12844993145 109249.15913486539 113850.97252284929 103436.51638620094 88515.67454328002 122046.67429974242 126309.34282216075 123925.76398309472 117224.3223972057 131383.38104888127 0.7773976254419215 0.8315295150930784 0.8665553558900342 0.7872876733756555 0.6737204799924255 0.9289354051128801 0.961379908279018 0.943237744330754 0.8922309767138076 1.0 17.00342327220747 2.581700704975862 8.910606088340044 0.9449692954324901 0.7942872250708979 0.6932440995749591 0.05250636350083712 0.21210736773219732 16.56343705002699 0.017502534054781516 0.01648523787211758 381.68114375995077 -2.581700704975862 -0.1506820703615922 GQKPALDCSQVS(ph)PPRPATSPENNASLSDTSPMDSS(ph)PSGIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 2 GQKPALDCS(0.055)QVS(0.935)PPRPAT(0.008)S(0.002)PENNASLSDTSPMDS(0.232)S(0.766)PS(0.002)GIPK 191.83 2.3258e-28 363840000.0 204950.0 139640.0 139410.0 117720.0 122400.0 228230.0 230010.0 188420.0 305290.0 250810.0 True False 203846.57197208577 144287.83298583733 159037.71622655762 132623.33992989644 137986.91447836088 212452.99729563133 218883.5375764722 202480.85717737317 230055.3701764135 234803.0910707556 0.8681596611122067 0.6145056793241177 0.6773237758553748 0.5648279131467299 0.5876707748995514 0.9048134601925267 0.9322004091952684 0.8623432351508421 0.9797799898089442 1.0 17.841091875402224 2.7247144604878932 20.595442254880336 0.9217541743068334 0.6552289771161098 0.7158560427789671 0.0858124043387495 41.994739397725 62464.19522339155 0.027421340524994314 0.026059575076354553 530.5355135645851 -2.7247144604878932 -0.26652519719072354 GQKPALDCSQVS(ph)PPRPATSPENNASLSDTSPMDSSPSGIPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 1 GQKPALDCS(0.185)QVS(0.815)PPRPATSPENNASLSDTSPMDSSPSGIPK;GQKPALDCS(0.018)QVS(0.947)PPRPAT(0.015)S(0.015)PENNAS(0.005)LS(0.001)DTSPMDSSPSGIPK;GQKPALDCS(0.052)QVS(0.761)PPRPAT(0.065)S(0.065)PENNAS(0.017)LS(0.019)DT(0.017)S(0.003)PMDSSPSGIPK 149.73 1.4573e-13 1597250000.0 633997.0 558599.0 556979.0 488789.0 508939.0 766006.0 717523.0 665588.0 921800.0 770258.0 True False 630583.6305956886 577191.6300347734 635396.8018517445 550669.6372833343 573749.3649322112 713053.8082041689 682813.671285959 715257.5563473812 694634.7414871699 721099.4749889487 0.8744752318747046 0.800432742020259 0.8811499992583997 0.7636528057266629 0.795659107838075 0.9888425008423379 0.9469063492196046 0.9918985953475323 0.963299469186017 1.0 19.45983876604454 2.7355139755436677 24.996758424341042 0.9762748249497962 0.8217413979168389 0.8243107897661985 0.03579758585226292 104.78794730296565 859749.3993511111 0.011094750683845286 0.010875994152078369 543.8936338698613 -2.7355139755436677 -0.15453342703295736 GQKPALDCSQVSPPRPAT(ph)SPENNASLSDTSPMDSSPSGIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 1 GQKPALDCS(0.009)QVS(0.14)PPRPAT(0.399)S(0.399)PENNAS(0.049)LS(0.003)DTSPMDSSPSGIPK 109.16 0.00031725 908510000.0 358560.0 308620.0 281320.0 288970.0 302630.0 377430.0 402670.0 335070.0 422450.0 399790.0 True False 356629.552799761 318892.23013527057 320927.4107227255 325553.57237123855 341168.1366714575 351339.1524746535 383191.3137512202 360074.6248509843 318342.8580399813 374275.0599225609 0.9528541732744608 0.8520263952432491 0.8574640554172291 0.8698243811345511 0.9115438702809817 0.9387191135507321 1.023822730348381 0.962058826269336 0.8505585654193677 1.0 18.513739390895843 2.8437883084845446 2.5935692238712127 0.9602513611525395 0.8797754303794812 0.3183004406494354 0.04973453023068425 0.3244931930491452 4.26412412811445 0.016695924752376575 0.01774440609258991 697.8921421956272 -2.8437883084845446 -0.08047593077305826 GQKPEQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQKPEQR 7 1 Q92522 Q92522 H1FX Histone H1x 0 ;;; 79.597 0.02936 367820000.0 1126810.0 1012630.0 998690.0 855780.0 805090.0 655892.0 981390.0 945650.0 1248950.0 1187600.0 False True 1120743.3801603597 1046334.7774022372 1139296.8712309066 964121.6602549007 907613.4393577094 610551.7298436929 933916.4164261314 1016219.2049134023 941163.0075725769 1111806.351244486 1.0080382963326933 0.9411124304435174 1.0247259965331639 0.8671668939251189 0.8163412975126326 0.549152943010516 0.8399991737596788 0.9140253640176732 0.8465170274653481 1.0 20.084474098007902 3.575038579632816 3.949001644447647 0.8189918245047431 0.9855291577575894 0.3057883715046862 0.10959740856974137 0.2975664579629883 8.273894869153342 0.03149947014046416 0.04972886966388712 3758.7079249322924 -3.575038579632816 0.16653733325284636 GQLCELSCSTDYR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQLCELSCSTDYR 13 0 E9PKG1;Q99873-2;Q99873-3;Q99873;Q99873-5 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ;;; 322.77 7.5983e-51 1745790000.0 1148090.0 1348320.0 1244160.0 1289360.0 1197470.0 1226340.0 1240700.0 1132710.0 1361290.0 1283990.0 False True 1141908.8110047914 1393198.0161233484 1419326.9135674187 1452592.8437989422 1349960.706539241 1141566.002293847 1180682.6010657346 1217238.5719848345 1025818.3198514541 1202044.6589208564 0.9499720351737577 1.1590235069752743 1.1807605508115055 1.2084350053208648 1.1230537039706803 0.9496868471747926 0.9822285655557093 1.012640057048811 0.8533945159511706 1.0 20.197059066044474 2.7573375016234385 8.230795166907107 0.9665552207660977 1.1342195302781481 0.5322067233588905 0.07676780220275117 0.17946294125684845 67.44718775514328 0.02388525371983171 0.024756566471441355 571.9229203070287 -2.7573375016234385 0.16766430951205047 GQLGHGDTK ddPTM_BT-474_Trastuzumab_2h_R1 3 GQLGHGDTK 9 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;; 123.79 0.00054777 883980000.0 2242490.0 2301440.0 2217080.0 2081560.0 2098840.0 2022050.0 2314540.0 2293950.0 3054770.0 2422060.0 False True 2230416.6830040608 2378042.039150144 2529225.59279518 2345085.2825728427 2366114.8332006834 1882270.4428937074 2202576.8577985656 2465136.1974420776 2301962.865320855 2267482.0571701108 0.9836535093855125 1.0487589225371934 1.1154335642028117 1.0342244055062484 1.0434988121377549 0.8301148125700454 0.9713756502873726 1.0871689986021964 1.0152066509376383 1.0 21.1126597039218 4.794979230338571 19.754643116708813 1.0186941830784435 0.9836509833405155 0.016351123366799336 0.07346462632317662 19800.499808342738 6929941.727178404 0.01880777204513779 13.024740940874734 62370.50067553101 -4.794979230338571 -0.03504319973792802 GQLGHGDTKR ddPTM_BT-474_Trastuzumab_2h_R1 3 GQLGHGDTKR 10 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;; 147.91 1.6913e-05 281932000.0 364473.0 447624.0 416115.0 436599.0 443995.0 411442.0 479085.0 418755.0 553860.0 463658.0 False True 362510.7178647572 462522.8942455782 474700.37506358186 491872.38863449654 500535.1314854571 382999.9829702894 455909.8282675727 450004.6244948043 417368.6243437667 434066.94948241516 0.8351493203917455 1.0655565801475881 1.093610963999029 1.1331717128452397 1.15312887120823 0.8823523270476631 1.0503214511291477 1.0367170894521993 0.9615305308119872 1.0 18.727558052215223 1.2528059003488947 22.68313438907895 0.9807653114776009 1.0377626318867352 0.0388876545218273 0.09612860589217577 228.2847636507928 363516.7037640692 0.06518163947829957 0.023471928088467844 17.898057556439465 -1.2528059003488947 0.0569973204091343 GQLHVDGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQLHVDGQK 9 0 O15067 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 84.17 0.015673 145110000.0 176720.0 196200.0 197220.0 200670.0 195740.0 212810.0 215340.0 194930.0 288160.0 243520.0 False True 175768.55915543778 202730.39839459557 224986.86173302992 226074.80142484143 220666.32875812388 198098.94560085578 204923.1815213146 209476.66643448352 217146.8291461737 227978.34511203904 0.7709879597075636 0.8892528730961905 0.9868782125883975 0.9916503311476267 0.967926706589954 0.8689375541501577 0.898871256480987 0.9188445785565162 0.9524888385318253 1.0 17.798537268637432 4.652316079360875 3.161335417084195 0.9409724015366614 0.7604153600940053 0.6300821001201418 0.04096002677838435 0.20224499724767095 3.2326679501620728 0.010845494889450358 0.07915460125191709 44907.21055367711 -4.652316079360875 -0.18055704144265605 GQLQEAIEHYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQLQEAIEHYR 11 0 O15294;O15294-3;C9JZL3 O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit 0 144.57 3.665e-05 305080000.0 100650.0 145210.0 127410.0 159660.0 142790.0 122370.0 132860.0 111070.0 140100.0 118310.0 False True 100108.11158326615 150043.2270687013 145348.22053242743 179872.93962969125 160973.46011736273 113910.84992799541 126433.05422551265 119358.60740203196 105574.23224381915 110759.35450971307 0.9038343716104552 1.3546776950162094 1.3122884398868637 1.6239977239477073 1.4533622088168283 1.0284535372405585 1.1415112952326305 1.0776390665184383 0.9531856944377622 1.0 16.757069025450487 2.728722725822772 24.757914283758804 1.0560407288444915 1.3464136210043125 0.4018462612662086 0.17545730288976671 646.0086099370621 1625734.3074608294 0.05841320375065611 0.0556800677440529 535.4546887134638 -2.728722725822772 0.290372892159821 GQLQSHGVQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GQLQSHGVQAR 11 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 0 ;; 133.05 0.00016976 560350000.0 331857.0 411970.0 383070.0 392930.0 375243.0 358312.0 370100.0 333617.0 397130.0 369255.0 False True 330070.31878477894 425682.17240887636 437002.9262958714 442674.89771198 423027.9718104868 333542.73481572175 352196.84908070246 358513.1946128003 299262.63276936417 345688.8297648892 0.9548191621038702 1.2314027407202959 1.2641511343976228 1.280558871436642 1.2237247356190182 0.9648640803423464 1.0188262354911481 1.037098001855117 0.8656994585937285 1.0 18.399114461019007 2.7387940673255735 24.999399097492876 0.9878026439499341 1.202226821109203 0.5524455420566974 0.09564053387137363 16.52613795005232 1769788.0444789066 0.030420908873717362 0.030480958181422903 548.0170459456045 -2.7387940673255735 0.21442417715926898 GQMQKPFEDASFALR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQMQKPFEDASFALR 15 1 K7EN45;Q13526 K7EN45 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 0 ; 94.922 0.0039075 1132460000.0 477530.0 595050.0 628380.0 649950.0 591200.0 560800.0 605710.0 567490.0 612510.0 574410.0 False True 474959.03153857007 614855.8795346785 716850.4420231268 732233.6033591257 666485.8156830644 522033.2159812035 576409.4932630981 609838.9854558309 461565.1177135022 537750.6620228569 0.883232816026514 1.143384700302878 1.3330535741723686 1.361660068636052 1.2393956209666845 0.9707718704008116 1.0718898812598727 1.1340552946263225 0.8583255220500009 1.0 19.036577870182786 2.7439659131772123 24.77971268010162 1.0304500414358841 1.2066821541605928 0.29440636704732936 0.14008960030874107 577.8148232269203 2648900.4852585 0.04597632677809635 0.0474799027643888 554.5821833086164 -2.7439659131772123 0.17623211272470862 GQNHNVQGFHPYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQNHNVQGFHPYR 13 0 K7EQ55;K7EK33;Q96EP5 K7EQ55 DAZAP1 DAZ-associated protein 1 0 110.31 0.00061813 104310000.0 83298.0 82059.0 86835.0 77925.0 83831.0 85571.0 84769.0 46356.0 105830.0 91438.0 False True 82849.53282327781 84790.28420928695 99060.61321664957 87790.29701016977 94506.38094473434 79655.67818246708 80668.39962097291 49815.3201109984 79749.6145493461 85602.34855598971 0.9678418200067096 0.990513527252449 1.157218404491055 1.0255594442335774 1.1040162161312759 0.9305314576780203 0.9423619910172246 0.5819387078897236 0.931628815034023 1.0 16.385362757993626 2.228890753980773 2.4263551167489594 0.7924168075076101 1.0456434966265475 0.303576552165017 0.12131899238986445 0.253718406312555 3.0481203058240833 0.05255793074594983 0.03624961242064803 169.39116463310776 -2.228890753980773 0.2532266891189374 GQNQDYR ddPTM_BT-474_Trastuzumab_2h_R1 6 GQNQDYR 7 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;;;; 121.31 0.010353 4714579000.0 6775503.0 8598330.0 8161974.0 8376490.0 7728847.0 5998555.0 8261318.0 7438026.0 9274470.0 8224466.0 False True 6739024.444677153 8884520.216249762 9311108.994050207 9436952.775139134 8713069.852984777 5583889.011929618 7861686.48704052 7993089.269650734 6988901.140030937 7699573.538560411 0.8752464550052402 1.1538977024837795 1.209301910997931 1.2256461644112775 1.1316301882628501 0.7252205572120086 1.0210547957842375 1.0381210374341332 0.9076997712963791 1.0 22.8763471098275 2.9061297206829906 24.999978373990437 0.9530003560591543 1.1320894810215498 0.34836840275550174 0.12213940887928475 64.69318653503603 17225.085938485987 0.037974774043515395 0.04027834606487292 805.6190379605349 -2.9061297206829906 0.17908912496239549 GQPAS(ph)PSAHMVSHSHSPSVVS ddPTM_BT-474_Trastuzumab_2h_R1 1 GQPASPSAHMVSHSHSPSVVS 21 0 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 GQPAS(0.778)PS(0.222)AHMVSHSHSPSVVS 204.8 3.285e-22 255280000.0 69159.0 135870.0 143560.0 171150.0 163280.0 149410.0 167590.0 18463.0 121170.0 99672.0 True False 68786.65562828723 140392.35081485065 163772.000154111 192817.5724515951 184072.74016361748 139081.6383733087 159483.03144402875 19840.802813214348 91309.27709481491 93310.84762650759 0.7371774812679597 1.5045662362514884 1.755122842840696 2.0664003956258115 1.9726831857792106 1.4905195045489934 1.7091585330184385 0.2126312568998463 0.9785494336124316 1.0 16.509757187392474 1.7534367276448735 24.999999999999996 0.674680430625351 1.6344690368503665 0.5025049620220363 0.39692273205072093 3.7471379430113028 6305.441508464492 0.18662192808312367 0.10349195096409292 56.68089871165077 -1.7534367276448735 0.9597886062250155 GQPDEELKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GQPDEELKPK 10 1 P54577 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed 0 ;;; 122.51 0.0004438 1138150000.0 2463590.0 2433410.0 2217210.0 2546360.0 2365380.0 2647810.0 2786280.0 2449440.0 3639440.0 2671010.0 False True 2450326.3051705807 2514404.5808225945 2529373.895665201 2868728.9149158294 2666597.12229433 2464773.126974307 2651496.991776765 2632229.650804293 2742548.7779974705 2500543.8550332915 0.9799173488752742 1.0055430844619673 1.011529508100359 1.147241992633493 1.0664068606222576 0.9856948207539002 1.0603681220945687 1.0526628619233906 1.096780915270513 1.0 21.253810476862853 3.979522683963439 24.784633346951317 1.059305330785781 0.996681705485219 0.29147974042935876 0.04304434540147286 815.5758899902455 987132.204247266 0.011071437444639225 0.02027034726638969 9539.43567688041 -3.979522683963439 -0.06262362530056198 GQPEGPLPSSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQPEGPLPSSSPR 13 0 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;H3BQK4 P49815 TSC2 Tuberin 1 GQPEGPLPSS(0.003)S(0.997)PR;GQPEGPLPSS(0.002)S(0.998)PR;GQPEGPLPS(0.023)S(0.287)S(0.69)PR;GQPEGPLPS(0.001)S(0.089)S(0.91)PR 197.01 1.4395e-07 1706220000.0 1318850.0 1523590.0 1487910.0 1526600.0 1568430.0 1457570.0 1430170.0 1356340.0 1490960.0 1518380.0 True False 1311749.4581380112 1574301.7721203954 1697394.7948544375 1719867.4034741751 1768160.263687059 1356811.6166507185 1360987.2133200455 1457556.978154964 1123532.8858404323 1421475.6884494806 0.9228082258436957 1.107512273978892 1.1941075099961256 1.2099168613641045 1.2438906117456963 0.9545091960951535 0.957446704420661 1.0253829805171275 0.7903989459474761 1.0 20.43895799408474 2.715892004949372 23.567709767975952 0.9546022275541853 1.1414579407129304 0.4706715765220496 0.10047524923158903 362.8467420977197 377237.27565387194 0.03345190808902135 0.0315658546530776 519.8667063521473 -2.715892004949372 0.18685571315874505 GQPGDIYHQTWAR ddPTM_BT-474_Trastuzumab_2h_R1 5 GQPGDIYHQTWAR 13 0 P04062-4;P04062-5;P04062-2;P04062;A0A0G2JNZ5;A0A0G2JNZ0;A0A0G2JLB3;P04062-3 P04062-4 GBA Glucosylceramidase 0 ;;;; 193.51 1.8074e-06 2263690000.0 1532020.0 2294530.0 2278200.0 2337550.0 2335010.0 2245970.0 2298780.0 2009590.0 2317830.0 2185740.0 False True 1523771.7745434225 2370902.043977324 2598950.757530617 2633483.590325597 2632359.6828114204 2090711.3803446915 2187579.2292076168 2159555.810291251 1746631.8538307715 2046244.2018938372 0.7446676076751462 1.158660360177446 1.2701078175934424 1.2869840207186702 1.2864347668646403 1.0217311200734003 1.0690704595194314 1.0553754084153504 0.853579378362676 1.0 20.964546898101375 1.8110297319796724 1.3014470700904588 0.9437347086132245 1.1529355320502015 0.18044989651342014 0.15725393777601376 0.7216468118786268 2.287808199499069 0.12843017907901333 0.052327027352588096 64.71869209160008 -1.8110297319796724 0.209200823436977 GQPIYIQFSNHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GQPIYIQFSNHK 12 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;K7ES59;K7EKJ7 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ; 210.15 4.6913e-08 6106100000.0 2796400.0 4827700.0 5129200.0 4914100.0 3270900.0 4944300.0 5442400.0 4399400.0 6181900.0 5426100.0 False True 2781344.493109246 4988387.076093717 5851346.7761943815 5536224.5561459735 3687429.7268567933 4602512.178630285 5179130.3200130155 4727705.567700542 4658453.578216026 5079801.652482077 0.5475301366836309 0.9820043020097659 1.1518848916739328 1.0898505364753526 0.7259003360997477 0.9060417105816366 1.0195536507773695 0.9306870407805204 0.9170542270956242 1.0 22.27634073550133 4.739783256097646 24.34887159808044 0.9676075268893561 0.5475299449002786 0.5735266562863869 0.10908158364109505 55.91883502805286 1113432.766547804 0.02747079544755612 0.17027551003273772 54926.66822173665 -4.739783256097646 -0.4200775819890775 GQPSNKEDVDDLVSQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQPSNKEDVDDLVSQLR 17 1 P12270 P12270 TPR Nucleoprotein TPR 0 ;;; 202.96 9.2229e-12 1850010000.0 2016200.0 1985030.0 1844540.0 1829660.0 1852840.0 2202360.0 2243570.0 2126390.0 2813100.0 2287510.0 False True 2005345.0032208764 2051100.5235740254 2104235.198970908 2061294.768400732 2088788.191356916 2050116.0369977958 2135039.947830297 2285072.019389636 2119849.198608765 2141519.1533641582 0.9364123594555002 0.9577782763940764 0.9825899505336293 0.9625385629461216 0.9753768431515515 0.9573185622819318 0.9969744816320307 1.0670331926753807 0.9898810362161125 1.0 21.030203149817158 2.023356138983067 5.352577528289276 1.0278989211960734 0.9640103470144469 0.5579569671888632 0.022580464945611018 0.10849473116624588 8.967900710441754 0.008779356429525237 0.006120438331634906 105.52518907689239 -2.023356138983067 -0.06388857418162652 GQPVAPYNTTQFLMDDHDQEEPDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GQPVAPYNTTQFLMDDHDQEEPDLK 25 0 O94992 O94992 HEXIM1 Protein HEXIM1 0 154.13 8.7064e-08 264620000.0 49035.0 45301.0 51954.0 39672.0 36995.0 50681.0 47209.0 40209.0 59691.0 50620.0 False True 48771.00100830066 46808.81639996725 59268.671607736665 44694.47113233821 41706.09396345562 47177.54176024138 44925.32031410673 43209.59975716486 44980.95286842119 47389.38826203763 1.0291544752302657 0.987748905749529 1.2506739120583923 0.9431324769419265 0.8800724274566181 0.9955296637165929 0.9480038034189017 0.9117990618118806 0.9491777488179611 1.0 15.532276417244569 3.5464703564963114 24.999949398403306 0.9405816931311876 1.0820242237118265 0.451065701798094 0.07162008732880543 144.02600211162567 51919.865385797726 0.018369201618442098 0.028457433675900416 3519.4139935001676 -3.5464703564963114 0.14144253058063894 GQRPETLHER ddPTM_BT-474_Trastuzumab_2h_R1 2 GQRPETLHER 10 1 Q5BJF2;Q86XC5;J3KTD1 Q5BJF2 TMEM97 Transmembrane protein 97 0 ; 75.819 0.022742 50143000.0 48172.0 80586.0 84006.0 71084.0 68418.0 67509.0 63997.0 49932.0 71344.0 64641.0 False True 47912.64730441231 83268.25629473435 95833.31460675829 80083.22711159325 77130.62675474277 62842.26172909244 60901.22061771884 53658.17938955847 53762.2271606212 60515.5560380556 0.7917410074573575 1.3759810162261514 1.5836145427878559 1.3233494386341322 1.2745586722567446 1.0384480593646646 1.006372982500908 0.8866840677430969 0.8884034235232422 1.0 15.885018426633847 2.5889761590515494 2.0511965030565076 0.9288653037371339 1.3016644940891953 0.39698402401147237 0.18948206398757114 0.31565210789502063 2.643723582073249 0.07525917890868443 0.06697306057501491 388.1290587457777 -2.5889761590515494 0.3727991903520613 GQS(ph)PLAPLLETLEDPSASHGGQTDAYLTLTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GQSPLAPLLETLEDPSASHGGQTDAYLTLTSR 32 0 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 GQS(0.99)PLAPLLET(0.01)LEDPSASHGGQTDAYLTLTSR;GQS(1)PLAPLLETLEDPSASHGGQTDAYLTLTSR;GQS(0.995)PLAPLLET(0.005)LEDPSASHGGQTDAYLTLTSR;GQS(1)PLAPLLETLEDPSASHGGQTDAYLTLTSR 175.37 4.1288e-15 534126000.0 42914.3 56304.8 46450.4 60234.6 60432.6 59046.9 60887.0 53368.5 60643.6 61347.3 True False 42683.254177026975 58178.87123102967 52990.2125658854 67860.2941840072 68128.33339791666 54965.126784451684 57941.66319907255 57351.128469751864 45698.7973626072 57432.06279193405 0.7431955618878024 1.0130033365125883 0.9226590512317019 1.1815750799314444 1.1862421456936567 0.9570460142373847 1.0088730994912143 0.9985907815556723 0.7957018282307856 1.0 15.809568759595676 4.967967229490593 2.084237415172014 1.016505109692056 0.5061474731015294 0.3392863091139313 0.10896011082271917 2.051712425858661 5.469488372410355 0.028375172381319456 2.4630300823221343 92889.62925133546 -4.967967229490593 -0.5103576365905267 GQS(ph)QTSPDHRS(ph)DTSSPEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GQS(0.486)QT(0.236)S(0.279)PDHRS(0.978)DT(0.013)S(0.006)S(0.001)PEVR;GQS(0.367)QT(0.299)S(0.335)PDHRS(0.811)DT(0.061)S(0.061)S(0.065)PEVR 73.839 0.0094849 495210000.0 192355.0 222680.0 225210.0 220050.0 231260.0 227930.0 239560.0 192820.0 210493.0 216560.0 True False 191319.38205264948 230091.76918709735 256917.61043958846 247908.30743776547 260709.59021458973 212173.73558950695 227971.56759192984 207209.20752012066 158619.82061169314 202738.95539365598 0.9436735119857295 1.1349164187037006 1.2672335710753486 1.2227956238425155 1.285937326195515 1.046536592721076 1.1244586278413045 1.022049300381295 0.7823845215326418 1.0 17.629263797348848 1.5724117192575895 2.6272427105266027 0.8906380223014653 1.1574729109926396 0.46525737441518134 0.10865997373557276 0.20601320552277544 3.177861940991191 0.07943870864724413 0.029804974549931137 37.36041736774148 -1.5724117192575895 0.26683488869117433 GQS(ph)TDSLPQTICR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQSTDSLPQTICR 13 0 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 GQS(0.949)T(0.05)DS(0.001)LPQTICR;GQS(0.951)T(0.048)DS(0.001)LPQTICR 239.87 3.1402e-09 309480000.0 520120.0 697050.0 682440.0 668630.0 609070.0 695310.0 726460.0 645770.0 750800.0 664070.0 True False 517319.73171076464 720250.8878743772 778521.6201251847 753278.4894438217 686631.4542592766 647244.8562836853 691318.3544533026 693960.6365536167 565775.4002045642 621688.4840610701 0.8321204992112206 1.158539857726599 1.25226964964773 1.21166550250885 1.1044622377013935 1.0411080032489466 1.1120012227625444 1.1162513933351983 0.9100625388920451 1.0 19.24583232958391 1.2478918828227306 24.881853425119303 0.9550312676597013 1.1123649966138667 0.22518131139437703 0.10922574473682434 227.80294548281285 607449.0971932542 0.07538222641872762 0.026692664431774607 17.696683463083936 -1.2478918828227306 0.15733372895416542 GQSQLS(ph)NPTDDSWK ddPTM_BT-474_Trastuzumab_2h_R1 4 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 GQSQLS(1)NPTDDSWK;GQSQLS(1)NPTDDSWK;GQSQLS(0.999)NPT(0.001)DDSWK;GQSQLS(1)NPTDDSWK 306.72 1.1440000000000002e-44 1503290000.0 3166330.0 3083340.0 2804930.0 2831180.0 2739050.0 3455040.0 3323220.0 3036780.0 3983040.0 3539120.0 True False 3149282.831092331 3185967.1079816073 3199839.763111381 3189607.0977125764 3087851.7818787135 3216201.2170893317 3162463.152666773 3263399.9440563815 3001473.16200158 3313250.331606924 0.9505115870809953 0.9615835777903372 0.9657706007259225 0.9626821937615619 0.9319705645003611 0.9707087890124729 0.9544896509926495 0.9849542344944503 0.9058999054097635 1.0 21.659815779239985 GQSQT(ph)SPDHRS(ph)DT(ph)SS(ph)PEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 GQS(0.14)QT(0.461)S(0.399)PDHRS(0.898)DT(0.675)S(0.432)S(0.994)PEVR 70.112 0.014473 1906700000.0 439680.0 546600.0 511970.0 567770.0 594170.0 658450.0 529070.0 493990.0 596410.0 535450.0 True False 437312.81173304 564793.2505733229 584050.9258769854 639649.6237852304 669834.0275784951 612932.9013245779 503476.86285632954 530854.0422303936 449432.74698455504 501277.1225781915 0.8723973068705643 1.1267086111340017 1.1651258347340248 1.2760399287630666 1.3362549324680408 1.2227426182390155 1.0043882718341985 1.0590031308432364 0.8965754205438539 1.0 18.93524886795039 2.228552683649947 24.20830337199289 1.0021143799309873 1.1773607699292286 0.333173888004745 0.12130414177745637 178.37178555903876 431460.76467093563 0.04817729717601089 0.03602432698021966 169.25935581159314 -2.228552683649947 0.17524638999824127 GQSQTS(ph)PDHR ddPTM_BT-474_Trastuzumab_2h_R1 9 GQSQTSPDHR 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GQS(0.001)QT(0.005)S(0.995)PDHR;GQS(0.001)QT(0.005)S(0.994)PDHR;GQSQT(0.052)S(0.948)PDHR;GQS(0.007)QT(0.19)S(0.803)PDHR;GQSQT(0.151)S(0.849)PDHR;GQSQT(0.017)S(0.983)PDHR;GQSQT(0.188)S(0.812)PDHR;GQSQT(0.027)S(0.973)PDHR;GQS(0.087)QT(0.011)S(0.902)PDHR 172.86 3.7645e-06 954681000.0 1175317.4 1329304.5 1227337.0 1279850.0 1269409.8 886905.4 1235583.0 1127933.4 1284208.9 1296604.1 True False 1168989.6217084392 1373549.5967009612 1400135.3813955558 1441878.8787740215 1431061.6136486381 825595.7172487437 1175813.129904571 1212105.5178377507 967732.82411263 1213853.716259382 0.9630399495837141 1.1315610590489429 1.1534630265912276 1.1878522588515221 1.1789407524809539 0.6801443256217923 0.968661309146841 0.9985597948103512 0.7972400719707813 1.0 20.21116313956421 2.774670379791419 24.999608545796953 0.9046225678039986 1.128747112847511 0.5345355924785411 0.10864346902627249 487.55886414204394 337547.221271944 0.03331111817776478 0.03533072306089374 595.2102202437129 -2.774670379791419 0.22412454504351242 GQSQTS(ph)PDHRS(ph)DTS(ph)SPEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 GQS(0.043)QT(0.199)S(0.757)PDHRS(0.965)DT(0.116)S(0.503)S(0.415)PEVR;GQS(0.222)QT(0.363)S(0.414)PDHRS(0.742)DT(0.443)S(0.562)S(0.254)PEVR 108.19 0.00047056 1110230000.0 304950.0 463620.0 395900.0 459170.0 434310.0 438300.0 443620.0 340830.0 382080.0 453940.0 True False 303308.18308313005 479051.31143579213 451639.27877551224 517300.8749202395 489616.8041429487 408001.3526472211 422160.40580702893 366264.4652996717 287921.50360969576 424969.1605624132 0.7137181029365179 1.1272613542163987 1.062757773241247 1.2172668582248005 1.1521231411121207 0.9600728488327563 0.9933906856872459 0.8618612814514576 0.6775115239624784 1.0 18.696998625056587 1.908996503950831 1.8587459301751754 0.8245397396592208 1.0597878838791117 0.24807323008710902 0.14809506981792928 0.424325006848479 2.728623601424288 0.09345242581396253 0.04390617488000835 81.09545296835805 -1.908996503950831 0.23524814421989093 GQSSWGTGESFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQSSWGTGESFR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 0 172.17 8.4849e-05 216910000.0 64963.0 97483.0 83664.0 79012.0 89490.0 85914.0 89321.0 78580.0 103390.0 105250.0 False True 64613.24642606784 100727.662725282 95443.16397947569 89014.91109871716 100886.02105121361 79974.96739980218 85000.20199064439 84444.03862115493 77910.9198550211 98532.8548909415 0.6557533169782132 1.0222748832028643 0.968643038762192 0.9034033490376482 1.0238820458706557 0.8116578727808138 0.8626584714786213 0.8570140255716695 0.7907100625598918 1.0 16.588317237975005 2.6959046060870597 24.947181942751843 0.855702459534195 0.92312193545854 0.04439811166770946 0.10998487321370468 1224.2283376525854 715983.516779438 0.033731358419020016 0.03179389542925414 496.48325563358037 -2.6959046060870597 0.06741947592434505 GQTEHDEGMLEYLEDIIGCGR ddPTM_BT-474_Trastuzumab_2h_R1 5 GQTEHDEGMLEYLEDIIGCGR 21 0 Q9NTJ3;E9PD53;Q9NTJ3-2;C9JR83;C9J578 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 0 ;;;; 208.92 2.8606e-22 298800000.0 239919.0 274562.8 242719.0 256705.8 251351.0 275881.7 273983.5 228950.1 300494.5 299181.6 False True 238627.30276150708 283701.45682128234 276891.7254486319 289204.7279593615 283359.05997590325 256810.64743466763 260729.87138638968 246035.51904705126 226441.65689500576 280087.5741457458 0.8519738995537712 1.0129026883343852 0.9885898233548523 1.0325510827869555 1.0116802248016012 0.9168941114861247 0.9308869634135102 0.8784235423418846 0.8084673430645483 1.0 18.095518455293153 2.423977912324211 2.1525105206504906 0.8905131895076096 0.9839583867154759 0.22187981588816075 0.0650210955221043 0.3962363323790087 3.7468356112984624 0.026218850543238897 0.020733485955429287 265.4470555480083 -2.423977912324211 0.09344519720786626 GQTPLTEGS(ph)EDLDGHS(ph)DPEESFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 GQT(0.029)PLT(0.398)EGS(0.573)EDLDGHS(0.994)DPEES(0.006)FAR 75.343 0.012904 410060000.0 88733.0 98631.0 104380.0 87244.0 122090.0 115100.0 109280.0 89974.0 116750.0 108610.0 True False 88255.27138716313 101913.87321130137 119075.79671277563 98289.08145467119 137637.4378158751 107143.40791625624 103993.70890985998 96688.31675871456 87978.52686984936 101678.41681430073 0.8679843191141261 1.0023156969234746 1.1711019943421073 0.9666661277208947 1.3536544148523453 1.05374779892508 1.022770733141801 0.950922720751054 0.8652625564629708 1.0 16.633653946556965 1.8618179838794624 2.4106454064113487 0.9284462547715578 1.0776564725521995 0.17669427160500084 0.12519911724474517 0.4729236802670035 5.05464060912093 0.0739587280310816 0.03609790921896308 72.7474850394134 -1.8618179838794624 0.1492102177806417 GQTPLTEGSEDLDGHS(ph)DPEESFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 GQTPLTEGSEDLDGHS(1)DPEESFAR;GQTPLTEGSEDLDGHS(1)DPEESFAR 234.74 1.4812e-37 466800000.0 98127.0 129217.0 134064.0 120185.0 148090.0 151943.0 127927.0 101520.0 119070.0 124235.0 True False 97598.69513493463 133517.90973167392 152939.04589482234 135400.40867715448 166948.38370180124 141439.53804534947 121738.68228140254 109095.93790811452 89726.79395625657 116306.21593706538 0.8391528719990891 1.1479860182530741 1.314968805945672 1.1641717305154282 1.4354209906729225 1.2160961209664325 1.0467083061775195 0.9380060818688106 0.7714703228313159 1.0 16.827568677541468 1.9117408751739629 2.354853681697679 0.8874547812969046 1.1993215115894993 0.4074021654762111 0.15242984242374846 0.287592017822749 2.912193992336088 0.08940834530135434 0.04513283125794134 81.60952971245204 -1.9117408751739629 0.3118667302925947 GQVIIIS(ph)DS(ph)DDDDDER ddPTM_BT-474_Trastuzumab_2h_R1 2 GQVIIISDSDDDDDER 16 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 2 GQVIIIS(1)DS(1)DDDDDER;GQVIIIS(1)DS(1)DDDDDER 280.32 2.7214e-35 790900000.0 906940.0 1138650.0 1009170.0 1099050.0 1048380.0 1124350.0 1073250.0 996570.0 1218950.0 1100800.0 True False 902057.1358105076 1176549.2769215403 1151252.3641371138 1238189.6173118656 1181884.9787649026 1046626.3309352099 1021332.7972868525 1070939.1138799237 918556.1055931728 1030546.0015577055 0.8753196212949421 1.141675650716364 1.1171285535987296 1.2014889344486317 1.1468531991569935 1.0156036987705532 0.9910598806293685 1.039195836247157 0.8913295517179669 1.0 19.974977474723346 2.596123958212076 4.996353526614644 0.9913411378149535 1.1055689610510842 0.2765058257166002 0.08821423296770886 0.3109329450168704 11.463456968198109 0.02922168158604659 0.027338325618421682 394.56990585610674 -2.596123958212076 0.11422782323613068 GQVLNSDELQELYEGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQVLNSDELQELYEGLR 17 0 O00764;F2Z2Y4;O00764-2 O00764 PDXK Pyridoxal kinase 0 ; 296.04 8.9514e-46 187237000.0 83090.0 87098.0 71396.0 75579.0 72810.0 85685.0 88761.0 67358.0 91235.0 74156.0 False True 82642.65267216685 89997.00427814727 81447.93621484334 85147.2936507105 82081.92192131923 79761.79763079429 84467.29133005203 72384.59599699349 68751.35673636572 69423.3005918543 1.1904166463941304 1.2963515636810123 1.1732074897113136 1.2264944611507156 1.182339664371276 1.1489196991615382 1.216699445430327 1.0426556412601138 0.9903210615202668 1.0 16.083132336394264 1.6493936769449096 3.368176696313834 0.99884643039127 1.2057980922328555 0.8480700696848116 0.03786145803704038 0.0713004074406954 1.9104988296713716 0.02328910048589005 0.010225197189317524 44.606040764827334 -1.6493936769449096 0.20695166184158553 GQVQEVGWHDVAGWLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQVQEVGWHDVAGWLGR 17 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ; 192.55 1.8041e-10 3529300000.0 2342400.0 2630600.0 2661700.0 3188000.0 2740900.0 2845600.0 2860300.0 2457500.0 2830500.0 2887500.0 False True 2329788.7786651044 2718157.9307687185 3036444.2240888597 3591600.4731269963 3089937.3684129054 2648890.3698218823 2721936.361592903 2640891.1289321454 2132961.201756818 2703217.277886875 0.8618577565789746 1.0055269892672196 1.1232705002767926 1.328639211693178 1.1430591960511336 0.9799028703651005 1.0069247425499812 0.9769437146378961 0.7890454160696139 1.0 21.36624604609939 2.087445796227147 1.4536068913401805 0.9149769134918628 1.094899976403986 0.24487932590482397 0.12400349248381326 0.6224413059643257 2.4851139552879986 0.08653321348268775 0.0443882072189817 122.30544615647372 -2.087445796227147 0.17992306291212312 GQVYTCGHGPGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQVYTCGHGPGGR 13 0 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0;D6R9F4 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 0 111.12 0.00050046 0.0 15382.0 21401.0 18794.0 19946.0 16646.0 21389.0 21771.0 20891.0 24957.0 27526.0 False True 15299.185021100859 22113.319347822322 21440.03183962356 22471.16155489055 18765.769431428093 19910.42877429021 20717.853556703536 22449.99250234853 18806.68175666662 25769.267113805756 0.5936988798918692 0.8581276002209323 0.8320000621258324 0.8720139946413819 0.72822286130809 0.7726424149495232 0.8039752727621831 0.8711925101789588 0.7298105015408465 1.0 14.653363886622293 -4.999999999999975 0.23814588653959592 2.1462271214892463 0.7738812546969768 0.3806357184439336 0.08166573269643312 181.9349750980465 1.8162496716039256 101.03728599735884 0.12611505369975184 1.0000000000000573e-05 4.999999999999975 -1.3723458667922697 GQYFGELALVTNKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GQYFGELALVTNKPR 15 1 P13861-2;P13861;H7C330;P31323 P13861-2;P31323 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit 0 218.78 1.7255e-12 369080000.0 379930.0 489600.0 426890.0 437530.0 422000.0 481540.0 489740.0 490740.0 590590.0 521570.0 False True 377884.4990941917 505896.04003054945 486992.40140560246 492921.2531390379 475739.19861003524 448252.2732232319 466049.40521151986 527361.5107272271 445047.0080005507 488282.956061457 0.7739047501109784 1.0360714699344853 0.9973569532996517 1.009499199224552 0.9743104744990465 0.9180174479954883 0.9544658469562908 1.080032600320482 0.9114530877554029 1.0 18.89735789477393 4.74608342211539 24.709169512738118 0.9904289885009058 0.7739046279151188 0.6323376180782291 0.048630340184764156 506.4094586221757 1663289.4527606259 0.011822122187514456 0.12449206446545821 55729.27870830227 -4.74608342211539 -0.21652436058578695 GQYILTLSEDIVDGHER ddPTM_BT-474_Trastuzumab_2h_R1 1 GQYILTLSEDIVDGHER 17 0 Q92993-2;Q92993-4;Q92993;Q92993-3;H0YEG3;E9PJI1 Q92993-2 KAT5 Histone acetyltransferase KAT5;Histone acetyltransferase 0 83.891 0.005418399999999999 36032000.0 11956.0 13867.0 13016.0 13703.0 14082.0 13013.0 13309.0 12954.0 15762.0 14350.0 False True 11891.630224436474 14328.554712221476 14848.539662899877 15437.79839499976 15875.259229446743 12113.441939307053 12665.192824682716 13920.69325907915 11877.666299979144 13434.170714346903 0.8851778406937254 1.0665753038942272 1.1052814482283235 1.149144128302099 1.181707421098416 0.901688849790379 0.9427595565059357 1.0362153016421527 0.8841384073893371 1.0 13.713619646696936 2.726669820163887 24.897931803099542 0.9610602200448692 1.0824810759066172 0.3510736979316672 0.08422154820741841 876.7508868351958 1835810.1035316358 0.028215681777464717 0.026794890281985624 532.9295725730665 -2.726669820163887 0.121420855861748 GQYISPFHDIPIYADK ddPTM_BT-474_Trastuzumab_2h_R1 2 GQYISPFHDIPIYADK 16 0 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 ; 161.14 8.536299999999999e-09 2050200000.0 2721900.0 3654600.0 3822600.0 3709300.0 3640100.0 4405400.0 4144800.0 4172100.0 4099700.0 4353900.0 False True 2707245.5928315176 3776241.15174765 4360788.853365173 4178896.999676904 4103645.15843694 4100865.0671961396 3944300.189326392 4483443.28749453 3089383.868165491 4076030.374438669 0.66418680533124 0.9264506897271823 1.0698617166133653 1.0252369623846096 1.0067749210534462 1.0060928625343943 0.9676817459608803 1.0999533555026484 0.7579393636365985 1.0 21.958733371781964 4.700694966795741 3.19595472409449 1.0013773155881263 0.6290250166593038 0.5552695730627808 0.08714696369238428 0.19982909592181938 3.3041695942824583 0.019918737682092395 0.17576183203384266 50198.98855931437 -4.700694966795741 -0.3723522989288225 GQYISPFHDIPIYADKDVFHMVVEVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GQYISPFHDIPIYADKDVFHMVVEVPR 27 1 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 ;; 285.17 1.3039999999999995e-61 7074650000.0 1945920.0 3693400.0 3468330.0 3991830.0 3771880.0 3791830.0 4042610.0 3122040.0 3521570.0 3692880.0 False True 1935443.3829320369 3816332.586292552 3956640.716735212 4497195.268708448 4252206.560315693 3529709.7171077174 3847053.5100301025 3355022.478197893 2653726.2601203867 3457197.2367663686 0.559830189133878 1.1038804918929341 1.1444648499244983 1.3008211451987692 1.2299577574269158 1.0209743544771464 1.112766569728136 0.9704457826467422 0.7675946954656556 1.0 21.721171482553515 1.5424712058711465 4.189311234145389 0.8785998750263274 1.084506069470722 0.12139226457804353 0.1949095480142945 0.3247768604446889 12.62963645982607 0.121115214909719 0.051091017775402967 34.87154632085913 -1.5424712058711465 0.20590619444439462 GQYNFDHPDAFDNDLMHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GQYNFDHPDAFDNDLMHR 18 0 Q9HA47-3;Q9HA47;Q9HA47-4;G3V170;Q9HA47-2 Q9HA47-3 UCK1 Uridine-cytidine kinase 1 0 ; 247.46 1.2699999999999999e-24 302810000.0 242210.0 311990.0 300510.0 303590.0 288860.0 292920.0 297790.0 218170.0 320160.0 279620.0 False True 240905.96827206103 322374.3985480621 342819.1959202557 342024.4628722157 325644.6087926423 272671.1298595112 283384.7600317282 234450.9532448127 241260.8579242053 261774.41220527358 0.9202808106513928 1.231496981818331 1.3095978061118894 1.3065618598505842 1.243989456606187 1.0416263666201755 1.0825533238501117 0.8956221170347435 0.9216365186029629 1.0 17.99796455877614 2.308713482949153 1.6207237822062408 0.9385561397625743 1.2129398037737393 0.48204976955282397 0.11241895396591517 0.3095269357012948 1.63467596536324 0.05974021311244881 0.03918255004154734 203.5698623366744 -2.308713482949153 0.274383664011165 GQYTHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GQYTHK 6 0 F5GWE5;Q00169;I3L4H1;I3L471;I3L4U7;A0A0A0MSW4;P48739;P48739-3;P48739-2;B3KYB7 F5GWE5;A0A0A0MSW4 PITPNA;PITPNB Phosphatidylinositol transfer protein alpha isoform;Phosphatidylinositol transfer protein beta isoform 0 ; 72.234 0.086135 339670000.0 425060.0 427110.0 397020.0 372700.0 337830.0 233906.0 421000.0 411240.0 537760.0 463100.0 False True 422771.52418860514 441326.09815655265 452916.9650402973 419883.7817862082 380850.6480247116 217736.62877549828 400634.6216238201 441928.81703440764 405236.25361481926 433544.5615201425 0.9751512571308386 1.0179486431778215 1.0446837654985894 0.9684904829943309 0.8784579068166151 0.5022243342461632 0.9240909866775174 1.01933885523755 0.9347049636464924 1.0 18.72582076172494 3.3504325586893753 4.018409201933917 0.8735670840579338 1.0118278279213564 0.17419091633240003 0.13566514307942779 0.43310653232731494 12.836520894724593 0.04243641427237963 0.05831184060333326 2240.952022763339 -3.3504325586893753 0.13826074386342257 GRAEGEWEDQEALDYFS(ph)DK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRAEGEWEDQEALDYFSDK 19 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 GRAEGEWEDQEALDYFS(1)DK;GRAEGEWEDQEALDYFS(1)DK 229.67 4.5315e-20 234760000.0 355500.0 298510.0 246270.0 221399.0 250042.0 321060.0 289670.0 317000.0 419200.0 323300.0 True False 353586.02749976283 308445.7248968946 280942.6753827867 249428.09069944883 281883.36658495414 298865.87789394666 275657.55545314 340656.14969338337 315893.77699221234 302666.7172089442 1.1682355785940837 1.0190936345470747 0.9282245433971505 0.8241014836370582 0.9313325534579926 0.9874421629505643 0.9107626963252832 1.1255157251341033 1.0437017320742832 1.0 18.20737051214733 1.7418245595292359 24.999999999992994 1.0651380679843174 0.9614525906054419 0.17210544848663467 0.08862912402748177 0.8958900502782996 6900.202489095216 0.043032155131519215 0.02386366312762979 55.18544634680931 -1.7418245595292359 -0.10368547737887557 GRAEGEWEDQEALDYFS(ph)DKESGK ddPTM_BT-474_Trastuzumab_2h_R1 16 GRAEGEWEDQEALDYFSDKESGK 23 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 GRAEGEWEDQEALDY(0.092)FS(0.906)DKES(0.002)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(0.962)DKES(0.038)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDY(0.002)FS(0.993)DKES(0.005)GK;GRAEGEWEDQEALDYFS(0.999)DKES(0.001)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(0.999)DKES(0.001)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK 266.0 3.4432999999999997e-44 9618078000.0 2468528.0 1825638.0 1500498.0 1556073.0 1631175.0 2324964.0 2347212.0 2427653.0 3906984.0 2370397.0 True False 2455237.7195272422 1886403.257208526 1711755.0758375817 1753071.6822522418 1838895.4675183052 2164244.711056567 2233668.3883394073 2608816.794232152 2944160.1441033934 2219116.234061026 1.1064033879082167 0.8500696034999352 0.7713679209606054 0.7899864168196753 0.8286611756938439 0.9752732542071294 1.006557634996771 1.1756107022199402 1.3267264233002896 1.0 21.081553805093286 2.0769240517524215 1.710611895522581 1.1874054010632982 0.8630150482525994 0.537691444973121 0.11676488585178724 0.26139238861107494 1.4520310591420815 0.06929084594389621 0.03677795922441895 119.37793213013428 -2.0769240517524215 -0.3243903528106987 GRAS(ph)PGGVSTSSSDGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 GRAS(0.999)PGGVS(0.001)TSSSDGK;GRAS(1)PGGVSTSSSDGK;GRAS(1)PGGVSTSSSDGK 159.74 5.4652e-09 2156560000.0 2622690.0 2249450.0 2074690.0 1996700.0 1970360.0 2439440.0 2479380.0 2369880.0 3162600.0 2454320.0 True False 2608569.7284482494 2324321.5834287573 2366788.318471245 2249482.015273737 2221273.666761305 2270807.2546240855 2359442.9172486146 2546732.4796068002 2383219.6066688285 2297683.1963509303 1.13530435030863 1.0115935857128315 1.0300760010039958 0.9790218333172545 0.9667449674041334 0.9883030255130351 1.0268791280694258 1.108391480449262 1.0372272428391098 1.0 21.131748462799493 -0.9572592558199468 6.655499496579759 0.9999999963744108 1.0316017125008774 0.033270684580971155 0.05094440622155593 3.1419369289856915e-09 4.720813085581415e-10 0.05271294901757997 0.012424559939574501 0.11034197273753354 0.9572592558199468 0.03160171612646656 GRAS(ph)S(ph)HSSQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 GRAS(0.993)S(0.898)HS(0.105)S(0.004)QTQGGGSVTK 108.64 0.00021933 141750000.0 143930.0 142340.0 127060.0 131260.0 120120.0 190440.0 145710.0 144940.0 211490.0 181460.0 True False 143155.09687212628 147077.70085365305 144948.94357468182 147877.50254160902 135416.56999297984 177275.33104753998 138661.45063374552 155756.15879040697 159371.1233208087 169879.06744427813 0.8426882665757653 0.8657788335334243 0.8532478177290818 0.870486898511579 0.7971351151747857 1.0435384047872047 0.8162362362815991 0.9168649271134974 0.9381445620019303 1.0 17.37414856854317 2.7838786455272877 24.99999618646077 0.9256041408012301 0.8487513656085868 0.38534298848180537 0.05926366965927304 545.3079041112106 300821.7030744773 0.017282264981586856 0.018330541184511554 607.965094463097 -2.7838786455272877 -0.07685277519264333 GRAS(ph)SHSSQTQGGGSVTK ddPTM_BT-474_Trastuzumab_2h_R1 4 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 GRAS(0.866)S(0.037)HS(0.094)S(0.002)QTQGGGSVTK;GRAS(0.601)S(0.127)HS(0.225)S(0.036)QT(0.01)QGGGSVTK;GRAS(0.578)S(0.024)HS(0.158)S(0.209)QT(0.032)QGGGSVTK;GRAS(0.41)S(0.074)HS(0.41)S(0.106)QTQGGGSVTK 171.52 7.9197e-12 264091000.0 140286.0 153677.0 139115.0 165330.0 137314.0 185490.0 143920.0 157703.0 185664.0 196665.0 True False 139530.71576323977 158792.04604529185 158701.1827907433 186260.76104833317 154800.1239761574 172667.51289649322 136958.0397722097 169471.59865960793 139909.5949701386 184113.67132662272 0.7578509230621361 0.8624674360199488 0.8619739188688658 1.0116617614881052 0.8407856019640048 0.9378310239122672 0.7438776207403001 0.9204726484377179 0.7599087778871951 1.0 17.490237232155692 -2.6076258097621623 2.1743416010092367 3.8974520957894687 0.8617279736337558 0.2157233975470777 0.08198063629538445 1998112.6238568362 248907.6564286151 28963988.14720028 0.018659037409083926 0.0024681650043321558 2.6076258097621623 -3.035724122155713 GRDDCGTFEDTGPLLQFDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRDDCGTFEDTGPLLQFDYK 20 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 0 105.96 0.00022654 161440000.0 138480.0 153910.0 142840.0 154350.0 161610.0 159850.0 152130.0 161240.0 214940.0 167100.0 False True 137734.43906657427 159032.8013094403 162950.63041246304 173890.69417413787 182190.07556248305 148799.94574642525 144770.89070696378 173272.5475601301 161970.9170484405 156435.53493849232 0.8804549370494946 1.016602790229018 1.0416471582146112 1.1115805257578377 1.1646335702058803 0.9511901870948359 0.9254348173762766 1.1076290794687909 1.0353844291971424 1.0 17.255208738082434 4.747908962391469 2.6680107770382473 1.0463016771522722 0.8452330239432356 0.32566601204020995 0.0692581629526817 0.5933612846967155 5.481933474233744 0.018020682355958606 0.26783861177083035 55964.02763739439 -4.747908962391469 -0.20106865320903655 GRDEVSK ddPTM_BT-474_Trastuzumab_2h_R1 4 GRDEVSK 7 1 Q9UKY7;H0Y8K3;D6R9V8 Q9UKY7 CDV3 Protein CDV3 homolog 0 ;;; 114.5 0.0053731 650402000.0 1366760.0 1461110.0 1412840.0 1329870.0 1289330.0 984140.0 1466000.0 1380050.0 1738040.0 1695020.0 False True 1359401.5160213108 1509742.1630903522 1611755.591374574 1498231.405645358 1453518.533042362 916108.7182163724 1395083.9793361542 1483036.3387519058 1309723.330542808 1586842.3724203687 0.8566707945590409 0.9514128115873175 1.0156998699979292 0.9441589358117184 0.9159816742386003 0.5773155129573809 0.8791572519003695 0.9345832733782309 0.8253644806226856 1.0 20.597727395782222 5.123793945528907 11.369859187929618 0.8902082500645365 6.636197338121826e-05 0.008006327397601432 0.11803438953478505 2645441.1328348266 4257148.45793384 0.029267195817479646 58288394.66862426 132982.33230235826 -5.123793945528907 -0.8901418880911554 GRDIVVLGVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRDIVVLGVEK 11 1 O14818;O14818-4 O14818 PSMA7 Proteasome subunit alpha type-7 0 ;; 106.32 0.0021404 955670000.0 1008300.0 1146960.0 1125480.0 1016220.0 899160.0 1084380.0 1217680.0 1032730.0 1882430.0 1285010.0 False True 1002871.424832662 1185135.8702480372 1283937.8011524705 1144873.3478046153 1013662.6962611368 1009419.3629559503 1158776.1664106722 1109797.556696682 1418530.349769684 1202999.5616475893 0.8336423859200428 0.9851507083052577 1.0672803566063074 0.9516822651511475 0.8426126896279639 0.8390853954871622 0.9632390595584672 0.9225253209375563 1.1791611526665153 1.0 20.198204686144926 1.258475611815807 24.978025710252624 1.0895805586517386 0.9290659845887248 0.39872713952758887 0.080434136275708 209.5097625846517 262775.3317839559 0.05515563901830281 0.02008353431063366 18.133248441785344 -1.258475611815807 -0.16051457406301384 GRDPDAHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRDPDAHPK 9 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;B1AP61 Q641Q2 FAM21A WASH complex subunit FAM21A 0 ; 73.067 0.027021 101454000.0 190241.0 199478.0 189691.0 193203.0 186562.0 193225.0 219710.0 200920.0 287330.0 229080.0 False True 189216.763593762 206117.50464300252 216397.8439762709 217662.47999045014 210319.56486039198 179867.81055272464 209081.78792629373 215913.67065108733 216521.37152474347 214459.9182747447 0.8822943005664877 0.9611003599234114 1.0090363071902486 1.014933148074796 0.9806940455463173 0.8387012920628641 0.9749224452209245 1.0067786670256966 1.0096123008279703 1.0 17.710348513258978 1.9971269185976548 24.990898866698927 1.0023752813309796 0.9516527567923831 0.2029821326938347 0.050868426835629546 217.5704354078397 1892497.8822851595 0.020727003651463023 0.015009472037241074 99.34063199324459 -1.9971269185976548 -0.05072252453859649 GRDPSSDTYEEDSELLLQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRDPSSDTYEEDSELLLQIR 20 1 Q9UBE0;M0QZS6 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ; 329.64 7.852699999999997e-80 575740000.0 241970.0 312120.0 321560.0 351930.0 303280.0 305380.0 303620.0 277230.0 339010.0 347130.0 False True 240667.26040539425 322508.7255194757 366832.8529503756 396484.3019158042 341900.91031860595 284269.79938719684 288932.7406589653 297918.31034541567 255465.5280012642 324975.8662070552 0.7405696404915664 0.9924082341363539 1.1288002928705223 1.2200422958890986 1.0520809262210478 0.8747412621898424 0.8890898392894031 0.9167397992428149 0.7861061529981331 1.0 18.30997305720496 2.739669290073008 24.69237040775469 0.8903064089352082 1.0412752818845485 0.2173270879992183 0.12505189478533787 126.11528209973555 2808862.885528456 0.04109698805293232 0.04139100431930958 549.1225645040957 -2.739669290073008 0.15096887294934036 GRDPVNPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRDPVNPEK 9 1 O60568;C9JIX5 O60568 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 0 79.148 0.02221 0.0 99335.0 116790.0 101940.0 104220.0 110910.0 113410.0 121280.0 97785.0 150500.0 115150.0 False True 98800.19139715591 120677.28454895402 116292.265921636 117414.24131408267 125033.73108492667 105570.23363842422 115413.22306540838 105082.21324216879 113411.2915966795 107801.02841512513 0.9165050913678822 1.1194446502332465 1.0787676855346169 1.0891755212384295 1.1598565702308614 0.9793063683204352 1.070613376905551 0.9747793206342467 1.0520427612244116 1.0 16.718011415814093 2.7029590288048593 24.996952678215877 1.0151718845806657 1.076590979955944 0.16227850273337152 0.0649164906348321 1024.772981965864 719523.8847635614 0.020178454496754736 0.019024750270407276 504.6136902323648 -2.7029590288048593 0.061419095375278454 GRDS(ph)PYQSR ddPTM_BT-474_Trastuzumab_2h_R1 9 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 GRDS(1)PYQSR;GRDS(0.999)PY(0.001)QSR;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(1)PYQSR 152.31 4.8922e-05 34097680000.0 829949.0 990610.0 956706.0 921558.0 963419.0 939969.0 896841.0 773202.0 843990.0 908143.0 True False 825480.6468000015 1023581.8550136085 1091401.8889623776 1038227.14831053 1086104.6990182037 874991.1554790231 853457.3745646753 830902.2594802014 635999.973386588 850184.5362396605 0.9709429089960593 1.2039525672166174 1.283723524059393 1.2211785842431058 1.2774928885698282 1.0291779233589469 1.003849562283843 0.9773198924027201 0.748072855099901 1.0 19.697416492890206 2.2890520556747393 1.5712746707488252 0.9100288842043298 1.1972235508580018 0.5687361488780557 0.1063958151209226 0.2828556929386637 1.395382659693065 0.0573583485825756 0.03652427005604518 194.55932715552734 -2.2890520556747393 0.287194666653672 GRDSPYQS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 GRDS(0.06)PYQS(0.94)R;GRDS(0.072)PYQS(0.928)R 107.95 0.007077 8518110000.0 2561480.0 2939320.0 2735160.0 2745370.0 2799110.0 2727450.0 2927270.0 2563880.0 2823360.0 2697280.0 True False 2547689.27628718 3037153.48934354 3120246.753563094 3092933.5605108743 3155560.0668752044 2538907.8012267016 2785666.7668426624 2755209.7447188427 2127580.7590857213 2525137.2811424104 1.0089309976583003 1.2027676720884994 1.2356741064594505 1.2248575883809312 1.2496588167466212 1.0054533748272336 1.1031743848724076 1.0911128536632844 0.8425604322483297 1.0 21.267930392610214 1.8225034438479877 0.9862410981501732 0.945690532782862 1.179872714009785 0.4609206741620244 0.09299542334493743 0.4809746993085812 0.8652227075021856 0.07988710663667313 0.034065425470661305 66.45129423104108 -1.8225034438479877 0.23418218122692314 GRDSPYQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 117.52 0.0018812 0.0 74653.0 85346.0 70978.0 73065.0 76773.0 86618.0 75551.0 65833.0 85765.0 74798.0 False True 74251.076542728 88186.69001725354 80971.0854481643 82315.02150847677 86549.58648077791 80630.30153683996 71896.30949715267 70745.79275320044 64629.36494212105 70024.32760221035 1.0603611499781718 1.2593721787407763 1.1563279251767984 1.1755203416744906 1.2359931104578852 1.1514612749283268 1.0267333076809613 1.0103030643162836 0.922955880551447 1.0 16.095568604659455 2.1701878947445885 2.2937660888355325 0.9804825247804309 1.1827356429270324 0.7386180956875836 0.054045106258789076 0.14495084081737808 1.5275019497829303 0.02442066878174901 0.015647168508614695 147.97484534522766 -2.1701878947445885 0.20225311814660152 GRDVIAQSQSGTGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRDVIAQSQSGTGK 14 1 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ;; 213.4 2.2194e-08 626000000.0 522237.0 641545.0 570347.0 563710.0 624391.0 691685.0 687141.0 610266.0 857030.0 678775.0 False True 519425.3340179847 662898.4375028578 650646.9000550058 635075.6282015118 703903.4927945939 643870.4440013518 653901.3646964694 655807.1477879569 645826.4401136352 635454.9983714855 0.8174069530480423 1.043187069425377 1.0239071243793083 0.9994029944355683 1.1077157227475196 1.0132431811087064 1.029028595844328 1.0320276801168122 1.016321284384778 1.0 19.27743043456065 4.740504007403345 24.982798329824142 1.0312465342757329 0.8174068797417877 0.8248094149432851 0.02930315960605869 62.81226598338509 807408.900651884 0.0066084075131744085 0.043229359051453864 55017.89972019314 -4.740504007403345 -0.21383965453394516 GRDWNVDLIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRDWNVDLIPK 11 1 P50395;P50395-2;Q5SX87;V9GYF8;Q5SX90;V9GYJ7;Q5SX86;G5E9U5;P31150 P50395;Q5SX86;G5E9U5;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 ; 105.65 0.0022229 493560000.0 1388500.0 1557900.0 1474630.0 1452330.0 1381940.0 1637820.0 1681230.0 1551520.0 2323800.0 1717630.0 False True 1381024.470276851 1609753.7597295647 1682245.086286267 1636194.8290892497 1557921.867599887 1524601.3584135764 1599902.481977707 1667302.3008589256 1751130.6273246733 1608009.3828629723 0.8588410521697409 1.0010848051542376 1.046166212843312 1.0175281602997208 0.9688512294785823 0.9481296406984314 0.9949584243900172 1.0368734900603536 1.0890052296877033 1.0 20.61684439410618 1.73885104484895 3.3731826875306488 1.049186175928785 0.9794973156470536 0.2575917405078303 0.051109083591198014 0.3066641653737802 7.409834860206444 0.029230033721708265 0.01405012242407407 54.80889480850639 -1.73885104484895 -0.06968886028173149 GREDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_BT-474_Trastuzumab_2h_R1 7 GREDVSNFDDEFTSEAPILTPPREPR 26 2 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFT(0.009)S(0.042)EAPILT(0.948)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR 188.4 1.6273e-17 14938120000.0 816661.0 1032814.0 957569.0 1046135.0 1035071.0 1037125.0 1021913.0 890517.0 978795.0 1036498.0 True False 812264.1879155677 1067190.5896407522 1092386.3918610453 1178575.583737362 1166881.1565035258 965430.9898796456 972479.1641032367 956971.9004936995 737584.0874310425 970347.8102494172 0.8370856092381804 1.0998021311208428 1.1257678744905493 1.2145908624603605 1.2025390732871257 0.9949329299063314 1.002196484426828 0.9862153450397547 0.7601234110493377 1.0 19.888142432233302 1.9426516417597435 1.4467328953955976 0.8980443331094733 1.0976696608072944 0.2975522081709189 0.11618418230723335 0.5019861703625814 1.9542112233540923 0.08380214185474473 0.038048399744516244 87.62976393637027 -1.9426516417597435 0.19962532769782115 GREETVAEDVCIDLTCDSGSQAVPS(ph)PATR ddPTM_BT-474_Trastuzumab_2h_R1 2 GREETVAEDVCIDLTCDSGSQAVPSPATR 29 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 GREETVAEDVCIDLTCDSGSQAVPS(0.859)PAT(0.141)R;GREETVAEDVCIDLTCDSGSQAVPS(0.946)PAT(0.054)R 132.6 6.5123e-06 470920000.0 166768.0 204271.0 176470.0 197671.0 176115.0 176929.0 174140.0 161155.0 222990.0 185831.0 True False 165870.13961766646 211070.03675057288 201315.44209526273 222696.12833233553 198542.20133461233 164698.3146760667 165716.18292059892 173181.20442850873 168037.10241291404 173971.10648207652 0.9534349868307318 1.2132476536977046 1.157177454153879 1.2800753690399673 1.141236641815963 0.9466992422275295 0.9525500312758656 0.9954595790672334 0.9658908643558358 1.0 17.40848819432483 2.7766470070168063 6.406445134133242 0.9721388928876153 1.1612452835938702 0.5530640218228702 0.07919169462455788 0.1491799231119971 18.295461905574587 0.024044314840737643 0.025202622577274524 597.9254058946498 -2.7766470070168063 0.1891063907062549 GREEYEGPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GREEYEGPNK 10 1 P23246 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 120.06 0.00055601 369320000.0 1107940.0 916190.0 760050.0 773270.0 780530.0 1033800.0 1056580.0 990280.0 1368200.0 1107350.0 False True 1101974.9741437056 946684.8303014489 867058.43352697 871165.9027148413 879925.8689362356 962335.8393034379 1005469.1888724384 1064179.722139949 1031025.4429407099 1036677.9749499669 1.0629867719499781 0.9131908395634032 0.836381648379109 0.840343794085995 0.8487938300982071 0.9282881112139795 0.969895390052022 1.0265287271983465 0.994547456253684 1.0 19.983536386240495 2.2078607343060646 2.5348325495270023 1.0079588323772415 0.8942021465918076 0.36097399277811604 0.06185902155682135 0.3027044975482492 3.9619840449463846 0.028856363447868568 0.019772833980275295 161.38409616681474 -2.2078607343060646 -0.11375668578543385 GREEYEGPNKKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GREEYEGPNKKPR 13 3 P23246 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;; 173.06 9.7801e-06 1387560000.0 1309600.0 1247300.0 1189920.0 1069530.0 983450.0 1358580.0 1374510.0 1167910.0 1710310.0 1387380.0 False True 1302549.2591102398 1288815.6264912274 1357450.393029948 1204932.3883386194 1108686.5281351646 1264664.562353321 1308019.7001618936 1255065.3747268138 1288827.0174798463 1298836.2206042246 1.0028587426552424 0.9922849440491154 1.0451282244026547 0.9277015602306496 0.8535999462806778 0.9736905564313514 1.007070544701469 0.9662999497680712 0.9922937141992221 1.0 20.308788092012357 2.4731225112316975 24.88393905524674 0.9873149336294833 0.9628562777921094 0.06246244338129392 0.048399720881821554 425.4541326909909 2647542.498584028 0.018512126052949236 0.015548390348927606 297.2504434792624 -2.4731225112316975 -0.024458655837373944 GREGS(ph)LTGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GREGSLTGTK 10 1 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 GREGS(0.999)LT(0.001)GTK 100.73 0.0023111 564830000.0 404500.0 378020.0 372120.0 355670.0 423720.0 431660.0 449980.0 410780.0 609250.0 509020.0 True False 402322.21694417484 390602.16718208446 424511.2614749767 400697.78553233366 477678.23041479744 401820.36021834204 428212.7483094699 441434.4894985748 459108.5010317405 476533.90780605335 0.8442677642740121 0.819673397388245 0.8908311759585227 0.8408589167917415 1.0024013456125558 0.8432146246807702 0.8985986963256141 0.926344342485354 0.9634330181150407 1.0 18.862219347298566 7.999999997608306 0.07853901336240136 1.0989947748779734 0.3820100719122916 0.5140513449608206 0.04489821761745474 158.1290550260705 0.9063009926124491 1.2735346867715605 12.33127736566394 99999999.44929212 -7.999999997608306 -0.7169847029656817 GRES(ph)DEDT(ph)EDAS(ph)ETDLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRESDEDTEDASETDLAK 18 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 3 GRES(1)DEDT(1)EDAS(0.998)ET(0.002)DLAK 180.65 6.4872e-14 393550000.0 442070.0 369240.0 303060.0 264670.0 286190.0 394710.0 343740.0 407920.0 528480.0 393180.0 True False 439689.9442385945 381529.9301897063 345728.21375525807 298177.1948627738 322634.6001189719 367424.62674739794 327111.9829856815 438361.06177578866 398243.1852691901 368086.91578166647 1.1945275025733322 1.0365213047018864 0.9392570040721833 0.8100727900897186 0.8765174372846902 0.9982007264972673 0.8886813656253689 1.1909172616062393 1.0819270346067151 1.0 18.489686942245182 1.7426576361245585 24.999999999996575 1.104934600828275 0.9573806387317206 0.22259371015720952 0.10788342101441178 1.0078714133578242 6179.477067327176 0.05227632481693945 0.028990063927286813 55.29140630702597 -1.7426576361245585 -0.14755396209655436 GRES(ph)DEDT(ph)EDAS(ph)ETDLAKHDEEDYVEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRESDEDTEDASETDLAKHDEEDYVEMK 28 2 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 3 GRES(1)DEDT(1)EDAS(0.881)ET(0.119)DLAKHDEEDYVEMK 137.19 3.8984e-05 369830000.0 159480.0 97490.0 113240.0 89287.0 91741.0 159390.0 136140.0 131060.0 260280.0 170900.0 True False 158621.3773998936 100734.89571605047 129183.20770027519 100590.72504519763 103423.67255849113 148371.7444637017 129554.38809469558 140840.362709195 196137.4815733135 159993.01568514877 0.9914268864838798 0.6296205824027173 0.8074302940479328 0.6287194763748358 0.6464261712649958 0.9273638841565645 0.8097502727846974 0.8802906933534874 1.2259127733381414 1.0 17.287649401697387 1.4521768401934358 3.281818236833793 1.1103322038731611 0.7692410906863736 0.5152133469739819 0.12703777641416844 0.1735557347847234 3.4989655871101384 0.09214158647615632 0.0321672682396464 28.32545143913496 -1.4521768401934358 -0.34109111318678753 GRES(ph)DEDTEDAS(ph)ETDLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRESDEDTEDASETDLAK 18 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 GRES(0.999)DEDT(0.001)EDAS(0.993)ET(0.007)DLAK;GRES(0.999)DEDT(0.001)EDAS(0.923)ET(0.077)DLAK 210.39 2.3733e-16 584370000.0 688710.0 581430.0 530180.0 475830.0 496460.0 636170.0 613450.0 552850.0 643000.0 610420.0 True False 685002.0618828749 600782.5460681424 604824.7355928291 536070.0292120514 559681.2382510382 592193.0652830986 583775.079893427 594106.4743154169 484541.2657585704 571462.4729931459 1.1986824931741245 1.0513070839480096 1.058380495966676 0.9380668977339497 0.9793840622982622 1.036276384311593 1.0215457838128748 1.039624651473033 0.8478969112716908 1.0 19.124299236561093 5.0719647542137505 1.1328962311074378 0.9912503149838708 1.4453919998275435 0.5673581348768493 0.05632630634472762 2.359862546981426 1.525070388375056 0.01609136148060905 1.522381339486552 118022.48489390228 -5.0719647542137505 0.4541416848436727 GRES(ph)DEDTEDAS(ph)ETDLAKHDEEDYVEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRESDEDTEDASETDLAKHDEEDYVEMK 28 2 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 GRES(0.926)DEDT(0.075)EDAS(0.974)ET(0.025)DLAKHDEEDYVEMK 102.94 0.0005854 202340000.0 120520.0 86129.0 66230.0 76242.0 82398.0 111520.0 136750.0 124010.0 144590.0 122510.0 True False 119871.13371103068 88995.75169892012 75554.60831852023 85894.22938273168 92890.89688879075 103810.88488984275 130134.88006426934 133264.25591002055 108957.73190673678 114691.30691391214 1.045163203179876 0.7759589989302396 0.6587649086188537 0.7489166502148616 0.8099209904244541 0.9051329842092019 1.134653388874095 1.161938594091088 0.9500086348176413 1.0 16.807396520128208 2.435126239639024 3.3605043741554423 1.0859111564592057 0.7967118694969278 0.539815291088817 0.10899750371051853 0.16914332547908287 3.975010692360103 0.041090680189471325 0.03454455713787481 272.3492851153549 -2.435126239639024 -0.2891992869622778 GRES(ph)PAAGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRESPAAGPR 10 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 GRES(1)PAAGPR;GRES(1)PAAGPR 102.52 0.0017782 325824000.0 107248.0 123977.0 112105.0 122208.0 109459.0 110311.0 116382.0 99148.0 134170.0 111732.0 True False 106670.58868437303 128103.499499321 127888.40956587212 137679.52026973138 123397.95483567759 102685.46021416271 110752.15803758545 106546.9272233426 101105.6012858903 104601.16810142215 1.019783914659006 1.224685171537576 1.2226288853855865 1.316233104932788 1.1796995872553728 0.9816855975699816 1.0588042184213398 1.0186016959202007 0.9665819523913679 1.0 16.674539436965446 2.791384751179272 5.755903487646132 1.0117732443243432 1.2044543297316344 0.6217088140746254 0.07283554481317966 0.1421732008508261 10.846092280760805 0.022758220200203294 0.02396685509525241 618.5641572668549 -2.791384751179272 0.19268108540729112 GRFPESSAVQSSSFER ddPTM_BT-474_Trastuzumab_2h_R1 4 GRFPESSAVQSSSFER 16 1 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 ;;; 196.71 1.2828e-12 1302900000.0 300106.0 344417.0 312705.0 343356.0 344204.0 336948.0 314370.0 314558.0 396043.0 359732.0 False True 298490.2626409113 355880.7116405266 356731.14591941517 386824.8343949165 388036.33914305374 313655.57785027515 299162.72208997724 338031.91525315866 298443.5093543103 336773.5957779399 0.8863232343123728 1.056735789569398 1.0592610299372602 1.1486198420673666 1.1522172284519456 0.931354422622526 0.8883200044199359 1.0037363958784005 0.8861844072570835 1.0 18.361419504962537 2.712973004985882 24.446891947357813 0.942811464137593 1.065227117855815 0.3695203338306562 0.07741156990658196 639.3665338250813 610861.8829403938 0.02575847644691816 0.024293174342083765 516.3842706972443 -2.712973004985882 0.12241565371822205 GRKDDDS(ph)DDESQSSHTGK ddPTM_BT-474_Trastuzumab_2h_R1 6 GRKDDDSDDESQSSHTGK 18 2 O94874;O94874-3;O94874-2 O94874 UFL1 E3 UFM1-protein ligase 1 1 GRKDDDS(0.996)DDES(0.004)QSSHTGK;GRKDDDS(0.996)DDES(0.004)QSSHTGK;GRKDDDS(0.975)DDES(0.025)QSSHTGK;GRKDDDS(0.999)DDES(0.001)QSSHTGK;GRKDDDS(1)DDESQSSHTGK;GRKDDDS(1)DDESQSSHTGK 306.19 1.7312999999999995e-50 3346140000.0 1420500.0 1402670.0 1113464.0 1304320.0 1536800.0 1744200.0 1811700.0 1912670.0 2545510.0 1649420.0 True False 1412852.1858323882 1449357.0230180798 1270230.0527974141 1469446.778265057 1732502.3706727538 1623627.559405161 1724061.14963391 2055403.1477414658 1918203.1685864688 1544152.603460493 0.9149692735459847 0.9386099662494669 0.8226065545275706 0.9516201798785832 1.1219761355128781 1.051468330116183 1.1165095637375713 1.3310880952667792 1.2422367868873303 1.0 20.558383905723215 2.929816918746431 1.0490140330503703 1.2101639397171375 0.8895858272233437 0.5906933458633803 0.09491300859607883 0.3156189794147065 0.7460443390302077 0.04636808869937082 0.05270941081900748 850.7793079288299 -2.929816918746431 -0.32057811249379387 GRLDS(ph)S(ph)EMDHSENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 GRLDS(0.683)S(0.683)EMDHS(0.594)ENEDY(0.034)T(0.005)MSSPLPGK 75.184 0.041824 146520000.0 126180.0 167340.0 139700.0 135550.0 140660.0 175100.0 160570.0 148560.0 199800.0 162710.0 True False 125500.66089991602 172909.81074083396 159368.54570583222 152710.61610174546 158572.2172428617 162995.749141064 152802.6156630328 159646.30157239462 150561.96718283414 152325.70849696055 0.8238967810375897 1.1351321615174639 1.0462353812653509 1.0025268722435818 1.0410075804507142 1.0700475366199682 1.0031308383251785 1.0480588152037391 0.9884212498892687 1.0 17.216799925067264 4.7556139310237775 24.969428783710992 1.0378924094456743 0.8238966085801146 0.7063834913826746 0.04124864829359079 1810.638512338533 2651089.2976255417 0.009375342889692866 0.2725461265765228 56965.7646165878 -4.7556139310237775 -0.2139958008655597 GRLDS(ph)SEMDHS(ph)ENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 GRLDS(0.806)S(0.198)EMDHS(0.997)ENEDYTMSSPLPGK 125.02 8.3149e-05 522820000.0 343230.0 377660.0 345690.0 363690.0 319100.0 443150.0 387170.0 334170.0 488230.0 373070.0 True False 341382.0878164376 390230.1847997088 394360.1472086554 409733.1167100242 359735.4935461195 412516.0835628923 368441.10796697077 359107.4622808768 367912.2584468228 349260.3531987039 0.9774430011591263 1.1173045586931993 1.1291294405359917 1.1731452280726398 1.0299923545615153 1.1811134008909405 1.0549182138556517 1.02819417947668 1.053404015306333 1.0 18.41394335682042 2.014330433196415 24.980327580159155 1.03313809721088 1.1045828055968259 0.24552160964194203 0.058807879220634976 316.80569899648304 552242.696660617 0.021270370192584227 0.01570253197995095 103.35474818526532 -2.014330433196415 0.07144470838594597 GRLDS(ph)SEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLDSSEMDHSENEDYTMSSPLPGKK 26 2 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 GRLDS(0.784)S(0.218)EMDHS(0.996)ENEDY(0.002)T(0.001)MSSPLPGKK 66.461 0.019125 206840000.0 120870.0 156180.0 135580.0 135150.0 132200.0 174250.0 173460.0 149920.0 235840.0 182080.0 True False 120219.24934991945 161378.35688719625 154668.48551751432 152259.97614275847 149034.88638921018 162204.50764037916 165069.07711845118 161107.79167833476 177720.39209409215 170459.49851346915 0.7052657692784431 0.9467255171728941 0.9073620822913129 0.8932325712006444 0.874312594422152 0.9515721274256963 0.9683771133786832 0.9451382474037054 1.0425960045872673 1.0 17.379069467440466 7.056881582543375 0.29340560112552827 0.9940111923077126 4.009710858953026e-29 0.6282402567128744 0.05282727313513456 22.29765179936123 0.5232191141369348 0.055291109524352594 10.371086574350855 11399389.22287462 -7.056881582543375 -0.9940111923077126 GRLDS(ph)SEMDHSENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GRLDS(0.329)S(0.329)EMDHS(0.329)ENEDY(0.011)T(0.003)MSSPLPGK 97.253 0.0051647 242130000.0 214740.0 251390.0 248540.0 193940.0 186990.0 270230.0 254760.0 213710.0 349450.0 234060.0 True False 213583.86369985697 259757.3641815358 283532.2716515932 218492.78411488407 210802.06812343758 251549.63615299689 242436.28552229083 229658.125397391 263332.7298900972 219122.09041115205 0.9747253839131264 1.1854458110277122 1.2939465442283087 0.997128056349375 0.9620301984519082 1.1479884829548634 1.1063981959436082 1.0480829430135024 1.2017625853969816 1.0 17.741375408879602 -2.556043508331453 1.7943143912974673 0.00010205585437231501 1.1005241289891734 0.08121708187654408 0.10276542343522119 2519010.439354053 134923.154203638 10238231.007892154 0.027738013674510623 0.002779434805486747 2.556043508331453 1.1004220731348011 GRLDSS(ph)EMDHS(ph)ENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 GRLDS(0.362)S(0.645)EMDHS(0.915)ENEDY(0.078)TMSSPLPGK;GRLDS(0.401)S(0.599)EMDHS(1)ENEDYTMSSPLPGK 131.78 4.3973e-05 484840000.0 362190.0 427310.0 409570.0 434760.0 393880.0 497040.0 483490.0 390170.0 533730.0 446190.0 True False 360240.0092830923 441532.7550356498 467233.8959537418 489800.57142305345 444038.28329033346 462680.7947063073 460101.74158883805 419286.4666431152 402199.3931155859 417713.7721975227 0.8624087431638404 1.0570222588372402 1.118550373610384 1.1725746289050851 1.0630204528673353 1.1076503230243537 1.1014761116645 1.0037650050112517 0.9628588279473808 1.0 18.672155184979697 1.6078824778281011 4.784375628853775 0.9822130215332003 1.0754424500139126 0.18364664514478912 0.07723975347641306 0.24923322372294315 12.53811421083874 0.04476040545577121 0.020569437023681917 40.53988177375393 -1.6078824778281011 0.09322942848071225 GRLDSS(ph)EMDHSENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GRLDS(0.056)S(0.515)EMDHS(0.38)ENEDY(0.048)T(0.001)MSSPLPGK 108.4 0.0042497 172950000.0 91975.0 106350.0 99341.0 88490.0 87220.0 145780.0 140220.0 129450.0 179000.0 150810.0 True False 91479.81681938311 109889.79546006746 113327.34931254883 99692.8249269158 98326.95000655769 135702.5717292079 133437.02290758223 139110.21633378076 134887.8484771137 141185.17668506323 0.647942078391444 0.778338052479792 0.802685890781184 0.7061139651317436 0.6964396143788674 0.9611672763063138 0.945120628387465 0.9853032704990623 0.9553966757997778 1.0 17.10722909955041 2.7320842701323897 24.51908633561188 0.9678834984111999 0.7323164815269735 0.8901024886020504 0.04268102349753877 126.30242889289133 478172.6139106493 0.013907886550177969 0.013406666600823134 539.6153188553398 -2.7320842701323897 -0.23556701688422643 GRLDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GRLDS(0.021)S(0.016)EMDHS(0.958)ENEDY(0.004)T(0.001)MSSPLPGK;GRLDS(0.041)S(0.041)EMDHS(0.734)ENEDY(0.143)T(0.041)MSSPLPGK;GRLDSSEMDHS(1)ENEDYTMSSPLPGK 188.33 7.383e-18 810190000.0 372074.0 387038.0 364209.0 355713.0 352341.0 473210.0 447140.0 425500.0 544820.0 534970.0 True False 370070.7949253074 399920.3258605879 415486.4614386224 400746.2293279241 397209.5378612764 440498.1065165215 425510.1299593227 457252.9706452203 410556.41121397226 500827.7565891404 0.7389183008658585 0.7985186935009814 0.8295995099558177 0.8001677703671698 0.7931060781583871 0.8795401227689722 0.8496137132199617 0.9129944669187592 0.8197557060536019 1.0 18.933954995141505 -4.999999957152228 0.035513551340740156 1.925254723428979 0.2583377117406996 0.7656653418718832 0.033808334981932454 463.5389000000757 1.2345408106493667 48.90461492569332 16.820781227775978 1.000000098660647e-05 4.999999957152228 -1.6669170116882794 GRLDSSEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLDSSEMDHSENEDYTMSSPLPGKK 26 2 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GRLDS(0.289)S(0.091)EMDHS(0.62)ENEDYTMSSPLPGKK 93.776 0.004488000000000001 153240000.0 247570.0 216120.0 205040.0 185470.0 214010.0 241200.0 228390.0 220310.0 326050.0 255870.0 True False 246237.11062761262 223313.4235527009 233907.84976037143 208950.48298333224 241262.90496334984 224526.4117237272 217341.90316547346 236750.65091151212 245699.3463461615 239540.1575386717 1.0279575381337043 0.9322588155877324 0.9764869997741779 0.8722983450054674 1.0071918940121762 0.9373226352975047 0.9073297162309225 0.9883547432888816 1.0257125522116077 1.0 17.869908010253724 1.5215490414456878 5.966523751601344 1.0112438875831296 0.9501038880572689 0.251716623743768 0.04327558132085541 0.1744946109531584 13.317960995282697 0.02322115552695464 0.010451963827450568 33.23143087226113 -1.5215490414456878 -0.06113999952586069 GRLGS(ph)VDSFER ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLGSVDSFER 11 1 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 GRLGS(1)VDSFER;GRLGS(1)VDSFER 189.07 1.7388e-06 875660000.0 419660.0 636380.0 476610.0 481020.0 529870.0 526130.0 551420.0 534160.0 777220.0 639380.0 True False 417400.5971886091 657561.5236001661 543712.545231616 541917.0826799085 597345.8037144542 489759.8714768021 524745.7079710384 574021.7316095199 585684.5452144264 598574.2209992415 0.6973247135364656 1.0985463465206589 0.9083460766552207 0.9053465112066615 0.9979477611268714 0.818210765340365 0.8766593841863821 0.9589817126625761 0.9784660359022854 1.0 19.191170621569842 1.5394117456466438 4.272930370132229 0.984440045610537 0.9091549249792232 0.116903275091364 0.09914426747449342 0.4170818224519064 16.826626438016948 0.05737599496710588 0.02427005464663467 34.62675113434932 -1.5394117456466438 -0.07528512063131376 GRLPLLLVANAGTAAVGHTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLPLLLVANAGTAAVGHTDK 21 1 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;J3KNK7;H3BNL6;Q6P474;Q6P996-4 H3BND4;Q6P996-4 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 0 ; 318.97 4.5518999999999994e-67 1532950000.0 809800.0 962810.0 899290.0 876700.0 774670.0 1084150.0 925120.0 816140.0 1181110.0 970900.0 False True 805440.1267772372 994856.5488190651 1025902.2152311956 987690.1301099239 873319.6326711762 1009205.2623145883 880368.4112984053 877044.511074946 890041.266563149 908936.3307706893 0.8861348144091705 1.0945283130838481 1.1286843538989475 1.0866439118705478 0.960814969218676 1.1103145821653764 0.9685699443347575 0.9649130322816978 0.9792118946422583 1.0 19.793819714402453 2.2046138955464127 24.998735747631862 0.9739036564761538 1.048728855055997 0.17575197848910162 0.06978895523990099 295.09827429767864 217311.93606670457 0.025917982222248788 0.019142668079665085 160.18206774447606 -2.2046138955464127 0.07482519857984316 GRLPNNSS(ph)RPS(ph)TPTINVLESK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 GRLPNNS(0.433)S(0.567)RPS(0.566)T(0.432)PT(0.002)INVLESK 197.37 4.902e-22 284120000.0 324050.0 174030.0 177940.0 228320.0 131040.0 196150.0 180200.0 216800.0 327120.0 234030.0 True False 322305.35080533946 179822.4833466436 202992.40531779392 257225.28858982277 147727.16726506883 182590.6121874342 171483.03756915062 232978.71688809333 246505.65918342702 219094.00503683672 1.4710824732568544 0.820754923515181 0.9265082597018772 1.174040743591204 0.6742638496212215 0.83338935794585 0.7826916009879815 1.063373307950266 1.1251136658987155 1.0 17.74119048353924 4.745869323829321 24.49970786643561 0.9306199981258951 1.4710828134195744 0.5322339977252613 0.151215352046585 533.595898620273 1788622.3719107495 0.03670240763103402 0.3756904046763277 55701.812085924066 -4.745869323829321 0.5404628152936792 GRLPNNSSRPS(ph)TPTINVLESK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 GRLPNNS(0.013)S(0.008)RPS(0.49)T(0.49)PTINVLESK 171.72 3.4099e-12 675450000.0 421290.0 452640.0 441370.0 426220.0 416270.0 539040.0 531880.0 481320.0 647430.0 545920.0 True False 419021.82144971885 467705.84877334145 503511.05954318657 480179.40829867905 469279.517074406 501777.43356367276 506150.93242108694 517238.5424934373 487879.5516175292 511078.9182143735 0.8198769436894655 0.9151343013862311 0.9851923873173485 0.9395406290213411 0.9182134115685933 0.9818002967463447 0.9903576813332388 1.0120521979278356 0.9546070757958494 1.0 18.963186556452175 5.992878056529802 0.7302815857272411 0.9805948966687713 1.1076352344228016e-21 0.7438825833637206 0.027482301495866675 7.955478785917986 0.7820187592771697 0.010798956482714221 9.72394264347182 983734.8487758555 -5.992878056529802 -0.9805948966687713 GRLPNNSSRPST(ph)PTINVLESK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 GRLPNNS(0.013)S(0.013)RPS(0.106)T(0.867)PTINVLESK;GRLPNNS(0.001)S(0.001)RPS(0.127)T(0.871)PTINVLESK;GRLPNNS(0.053)S(0.053)RPS(0.178)T(0.715)PTINVLESK 160.88 9.833099999999998e-10 3462470000.0 1845030.0 2195540.0 1873770.0 1782440.0 1834710.0 2322270.0 2459430.0 2200650.0 3139480.0 2515900.0 True False 1835096.5634821032 2268617.2216680413 2137580.528899194 2008096.7212423088 2068349.4433218457 2161736.940935571 2340457.9749650205 2364873.677674272 2365797.220876699 2355333.10802964 0.7791240046794307 0.9631831752094968 0.9075491367280074 0.8525744041878592 0.8781558057629177 0.9178051858422599 0.9936844886127113 1.0040506243520746 1.0044427316082747 1.0 21.16749967982796 2.3314938387283037 2.640675175404278 1.0034716238195471 0.8817582969996272 0.6473462468042819 0.043306394808367156 0.17536852980400344 2.502502100392505 0.01696351938639587 0.013008905118976363 214.53286801385636 -2.3314938387283037 -0.12171332681991998 GRLS(ph)PVPVPR ddPTM_BT-474_Trastuzumab_2h_R1 11 GRLSPVPVPR 10 1 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPL9;Q5QPM0 Q9UKM9 RALY RNA-binding protein Raly 1 GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR 106.47 0.0014612 70776608200.0 2650579.1 2866010.1 2569506.4 2852803.6 3590229.8 3113226.8 2673524.4 2445703.9 3017732.0 2917376.6 True False 2636308.676632625 2961403.5136388084 2931270.566569996 3213968.2432554546 4047424.2840707744 2898016.7590636034 2544195.810916987 2628214.7440507654 2274052.3841370777 2731187.1276962357 0.9652610946714439 1.0842916926518913 1.0732587807128877 1.1767660335915708 1.4819285881318534 1.0610831933394798 0.9315347839468705 0.9622975728754523 0.8326241585852989 1.0 21.381096733281165 2.4034905557610173 4.936531226184464 0.9348700756544451 1.1595951744413258 0.3926679851213656 0.13102082794541264 0.22557092118088298 10.221800503655887 0.04918147912635422 0.040989349083004646 253.21565699903212 -2.4034905557610173 0.22472509878688063 GRLT(ph)PS(ph)PDIIVLSDNEAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 GRLT(1)PS(1)PDIIVLSDNEAS(0.55)S(0.45)PR 127.77 1.6117000000000002e-05 176090000.0 158360.0 181680.0 167610.0 177810.0 176810.0 173750.0 195980.0 177510.0 214450.0 204460.0 True False 157507.40735544986 187727.1089721208 191208.0311077632 200320.72776872994 199325.70546502477 161739.07146350565 186499.69868369677 190756.6975775158 161601.67098277676 191411.18775298735 0.8228746146161023 0.980753064519819 0.9989386375602751 1.0465466001247543 1.0413482503554128 0.8449823302503455 0.9743406374154642 0.9965807109649403 0.8442645013588275 1.0 17.546315630509692 4.7405494022160255 23.835288574856246 0.9725894962217831 0.8228745139515912 0.3004372953409272 0.06711126252876858 115.56669050069156 1384840.376467545 0.015942182796003058 0.10387973383746756 55023.65078977388 -4.7405494022160255 -0.14971498227019198 GRLT(ph)PS(ph)PDIIVLSDNEASS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 GRLT(1)PS(1)PDIIVLS(0.001)DNEAS(0.329)S(0.671)PR 100.69 0.00054616 215540000.0 95411.0 126530.0 97860.0 126000.0 110290.0 138010.0 130640.0 118030.0 127630.0 121040.0 True False 94897.31777715852 130741.47456099975 111637.83738563157 141951.58708092888 124334.77775995462 128469.69354059547 124320.4441067362 126837.99794419573 96177.29665437994 113315.12357244255 0.8374638334704767 1.1537866300557533 0.985198037702896 1.2527152828825976 1.0972478680700304 1.1337382821496425 1.0971213743349795 1.11933865441278 0.848759579676879 1.0 16.789980897350624 1.2490267869463674 24.99765153109197 0.9243797780847824 1.0930377026797644 0.25235167344969334 0.10952365134885189 221.1256769709986 528150.1968486687 0.06961901766317428 0.024824253792000126 17.742989148943654 -1.2490267869463674 0.16865792459498197 GRLT(ph)PS(ph)PDIIVLSDNEASSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(1)PS(1)PDIIVLSDNEASSPR;GRLT(1)PS(1)PDIIVLSDNEASSPR 197.32 2.0999999999999997e-21 378820000.0 343530.0 437220.0 402490.0 450580.0 404780.0 416070.0 431170.0 396230.0 460120.0 460070.0 True False 341680.472649771 451772.6033949283 459157.09349420463 507623.38180099125 456326.333680972 387308.0602234298 410312.6598706473 425798.6946151722 346729.5912921202 430707.938714256 0.7932996862554968 1.0489070731864247 1.066052078967652 1.178579116317991 1.0594797371118623 0.8992359448484211 0.9526470793538369 0.9886019187068185 0.8050225225176325 1.0 18.716350389700207 2.7444719994528946 24.453002572325722 0.935388766746543 1.040693967262896 0.18479901659630615 0.10338574740127514 616.2568139079158 2549206.6920204903 0.032516640855607175 0.0336349460176745 555.228818341275 -2.7444719994528946 0.10530520051635306 GRLT(ph)PSPDIIVLS(ph)DNEASS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 GRLT(1)PSPDIIVLS(1)DNEAS(0.242)S(0.758)PR;GRLT(0.986)PS(0.273)PDIIVLS(0.729)DNEAS(0.347)S(0.665)PR 187.69 2.333e-17 574232000.0 250220.0 279750.0 248949.0 310532.0 331482.0 293202.0 285518.0 265305.0 294402.0 285159.0 True False 248872.84332205553 289061.3096375537 283998.8552965017 349845.31936043664 373694.2678522555 272933.6358632684 271706.4035553206 285103.40629149246 221850.57188468837 266959.90848309733 0.9322480095838548 1.0827892146054423 1.0638258640041571 1.310478870585121 1.3998141892377676 1.0223768707972467 1.0177798048373385 1.0679633803872985 0.8310258013844611 1.0 18.026263571497445 2.507659723209579 24.899442970893617 0.9980787972730246 1.162337681051822 0.2857609237969323 0.13434920045185617 962.5443114148554 784806.2140698334 0.04664363797195213 0.04392215972476303 321.8546019939661 -2.507659723209579 0.16425888377879738 GRLT(ph)PSPDIIVLS(ph)DNEASSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(1)PSPDIIVLS(1)DNEASSPR;GRLT(1)PSPDIIVLS(1)DNEASSPR 217.57 1.32e-24 452250000.0 259920.0 307970.0 278543.0 303170.0 286819.0 288783.0 276740.0 264740.0 321820.0 295856.0 True False 258520.61959982655 318220.5952782035 317759.4332608419 341551.2909152793 323343.6995405969 268820.11093206104 263353.0289505367 284496.243122481 242511.77316706566 276974.2167849348 0.9333743140451333 1.148917754771722 1.1472527549651887 1.2331519333457936 1.1674144376827218 0.9705600544789869 0.9508214591505653 1.0271578575972178 0.8755752646657773 1.0 18.079392158119987 2.7312235146857677 24.27900683231463 0.9703594726107022 1.1344253355269225 0.49751064584312044 0.08068565484893411 327.8591214267614 1084906.9508990955 0.026157612971915125 0.02515296002551033 538.5468805946674 -2.7312235146857677 0.16406586291622027 GRLT(ph)PSPDIIVLSDNEASS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(0.994)PS(0.006)PDIIVLSDNEAS(0.072)S(0.928)PR;GRLT(0.999)PS(0.001)PDIIVLSDNEAS(0.049)S(0.951)PR 132.29 2.7021e-05 349170000.0 373559.0 380871.0 325735.0 348556.0 359114.0 417887.0 389094.0 354125.0 526350.0 396043.0 True False 371547.79985030694 393548.0609936183 371595.65666062455 392683.153861748 404845.03926456027 388999.4552901874 370272.036736577 380551.6057103138 396638.09522865235 370767.19667052885 1.002105372823669 1.061442502270051 1.0022344479164695 1.0591097523945574 1.0919116979604688 1.049174411283909 0.998664499075435 1.0263896297397623 1.0697766652240082 1.0 18.5001540827632 -1.2001217792332202 3.3758148322406676 0.9999234187830983 1.039174182490788 0.13456619283736826 0.030420695336693962 3372419.442156179 5583137.519795007 2761.5305507289936 0.007561364334996466 0.06307804443975877 1.2001217792332202 0.03925076370768976 GRLT(ph)PSPDIIVLSDNEASSPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 GRLT(1)PSPDIIVLSDNEASSPR;GRLT(0.999)PS(0.001)PDIIVLSDNEASSPR;GRLT(0.999)PS(0.001)PDIIVLSDNEASSPR;GRLT(0.99)PS(0.01)PDIIVLSDNEASSPR;GRLT(0.991)PS(0.009)PDIIVLSDNEASSPR;GRLT(0.855)PS(0.145)PDIIVLSDNEASSPR 276.52 1.3369e-44 3138980000.0 1525930.0 1872340.0 1709560.0 1872060.0 1861390.0 1778860.0 1749540.0 1743640.0 1986740.0 1892680.0 True False 1517714.5624267592 1934659.7050465688 1950251.1882380995 2109062.6040533655 2098426.983177095 1655891.5951860275 1664908.0663081685 1873759.270824518 1497134.5479520736 1771887.5419951275 0.8565524202048557 1.0918637098538215 1.1006630737084682 1.190291457029255 1.1842890327081863 0.9345353787642247 0.9396240036957982 1.0574933377062317 0.844937679434393 1.0 20.75685561127894 2.7198267324767635 24.56944943796753 0.9657189128742506 1.0918776352748523 0.2921455252747104 0.09975946105230064 909.618453775756 1192961.01125753 0.03306034639402655 0.031218580778203928 524.598123139276 -2.7198267324767635 0.12615872240060166 GRNDS(ph)GEENVPLDLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRNDSGEENVPLDLTR 16 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 GRNDS(1)GEENVPLDLTR 205.98 5.5802e-11 404140000.0 148370.0 181200.0 160940.0 157740.0 158680.0 194830.0 194820.0 147650.0 165070.0 178210.0 True False 147571.19240545668 187231.1324622867 183598.95308444282 177709.86782655335 178886.95742995388 181361.86068048843 185395.81231532723 158668.39275150836 124390.71032467687 166836.48522674298 0.8845259009436494 1.12224332829732 1.1004724346411303 1.0651738891827687 1.0722292380280813 1.0870635426897444 1.1112426161661269 0.95104132969396 0.745584577352015 1.0 17.34807529858934 1.5431589230332203 4.594135210475733 0.8651130439359036 1.0674299535514318 0.45089527186982437 0.08544787854262373 0.12320739045373653 5.711762165629674 0.04733285449785217 0.020511830769779544 34.92681011025995 -1.5431589230332203 0.20231690961552817 GRNS(ph)ATSADEQPHIGNYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRNSATSADEQPHIGNYR 18 1 E9PC69;Q7KZI7-14;E7ETY4;F5H4J8;F5H6N2;F5H4F6;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 GRNS(0.961)AT(0.033)S(0.006)ADEQPHIGNYR 150.63 3.2432e-08 370710000.0 40474.0 54302.0 70481.0 58238.0 62628.0 65473.0 50132.0 38399.0 62206.0 57702.0 True False 40256.09248108414 56109.409243747796 80404.1121681659 65610.92482872333 70603.30457476144 60947.00561686398 47706.923637162385 41264.52836617111 46876.16481769463 54019.40895883242 0.7452153449469032 1.038689802891182 1.488430060933117 1.2145805756357808 1.306998834966288 1.1282427333351797 0.8831441246149008 0.7638833738003009 0.8677652295940229 1.0 15.721190234560598 2.247733143615297 4.1221261563466385 0.844982828054345 1.177014815967221 0.3344623667216743 0.1877264758265973 0.2215865036544172 8.58289041706249 0.0742526951208476 0.05732083664909747 176.90216320860446 -2.247733143615297 0.3320319879128759 GRPAPGFHHGDGPGNAVQEIMIPASK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRPAPGFHHGDGPGNAVQEIMIPASK 26 1 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4;C9JSZ1 FUBP1 Far upstream element-binding protein 1 0 92.275 0.006107199999999999 769960000.0 647260.0 732360.0 689180.0 740940.0 691620.0 850580.0 838220.0 591590.0 985120.0 731130.0 False True 643775.2240773472 756736.1598790316 786210.5535400527 834742.9280297094 779693.707447092 791781.406649949 797672.0962886434 635737.4498331512 742350.3759317003 684468.6574481152 0.9405474115900586 1.1055819015882324 1.1486436157226818 1.2195487973720482 1.1391225864950512 1.1567825612379754 1.1653887838525454 0.928804325684324 1.0845644542722874 1.0 19.38462495488355 1.7491260284402526 24.999999999999964 1.0015962254095652 1.1306358023622463 0.33891854432498036 0.07690220274844016 2.9715178355626573 7044.855854047717 0.03592490499090723 0.019922087381173386 56.121081084775284 -1.7491260284402526 0.1290395769526811 GRPGRPPS(ph)TNK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRPGRPPSTNK 11 2 Q8WVM7;Q8WVM7-2;F8WF82;F8WCB3;C9JJQ0 Q8WVM7 STAG1 Cohesin subunit SA-1 1 GRPGRPPS(0.992)T(0.008)NK 92.939 0.0075774 22332000.0 41965.0 24243.0 23820.0 25012.0 22814.0 25276.0 22432.0 29424.0 43906.0 35042.0 True False 41739.065102749824 25049.91359979703 27173.648952848438 28178.51663546187 25719.22767082784 23528.729613304014 21346.878461438333 31619.76829204455 33085.95461025784 32805.58955903442 1.2723156530273416 0.7635867526391844 0.8283237496448227 0.8589547395499164 0.783989192590046 0.7172170940858574 0.6507085758365698 0.9638530725120499 1.0085462585794684 1.0 15.001654027992458 -0.7673601616595296 6.336508733127919 1.0000000021994384 0.8577847871927423 0.043676002787621515 0.1684172069023929 5.899251933056353e-09 9.309940365235546e-10 0.15835683591118557 0.0373250636171615 0.1708597782347871 0.7673601616595296 -0.1422152150066961 GRPGS(ph)GTSGVDSLSNFIESVK ddPTM_BT-474_Trastuzumab_2h_R1 4 GRPGSGTSGVDSLSNFIESVK 21 1 Q8IXT5;B9ZVT1;E5RHG1;E5RJ83;E5RJV8 Q8IXT5 RBM12B RNA-binding protein 12B 1 GRPGS(0.564)GT(0.217)S(0.217)GVDS(0.003)LSNFIESVK;GRPGS(0.464)GT(0.254)S(0.254)GVDS(0.028)LSNFIESVK;GRPGS(0.918)GT(0.041)S(0.041)GVDSLSNFIESVK;GRPGS(0.887)GT(0.056)S(0.056)GVDSLSNFIESVK 227.24 1.2868e-25 608086000.0 906730.0 924380.0 851733.0 733312.0 800457.0 987380.0 952180.0 923230.0 1122370.0 967700.0 True False 901848.2664271737 955147.4295004893 971649.603004048 826149.2240118277 902390.4542696534 919124.744642512 906119.4157191662 992126.1106669495 845776.9524874755 905940.5575103476 0.9954828260538197 1.054315784388072 1.0725312990449154 0.9119243168472358 0.9960813066472591 1.0145530377494043 1.0001974281947483 1.0951337838251243 0.9335898977873226 1.0 19.789056866652665 -0.34528989575139324 8.058979173068826 1.0000002560764358 1.0141379274490825 0.0 0.05421120387723158 0.0 0.0 0.05199763834433676 0.012255960892988726 0.4515544268222441 0.34528989575139324 0.014137671372646654 GRPITMFIPSDVDNYDDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 GRPITMFIPSDVDNYDDIR 19 1 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 0 ;; 131.18 1.4681e-05 586370000.0 338951.0 503056.0 459905.0 510816.0 520068.0 390527.0 400903.0 340456.0 410868.0 387911.0 False True 337126.1254769963 519799.9148562264 524655.6264340786 575485.253224856 586295.57711546 363530.787691675 381509.79029181576 365862.5555205385 309615.08674913284 363154.1878726839 0.9283277922577265 1.4313477090851008 1.4447186455633398 1.584685713239281 1.6144535756283385 1.0010370245795517 1.0505449283860855 1.007457900082937 0.8525719848167604 1.0 18.4702226916649 2.718438198223635 23.3893942057105 0.9905164210063411 1.415075106258028 0.5695473911030291 0.1815780175893327 266.80756623629935 310124.2360636491 0.06028140767039562 0.05692039633874831 522.9235468537642 -2.718438198223635 0.42455868525168694 GRPLAEESEQER ddPTM_BT-474_Trastuzumab_2h_R1 1 GRPLAEESEQER 12 1 Q8N357 Q8N357 SLC35F6 Solute carrier family 35 member F6 0 174.51 2.7535e-05 426700000.0 137370.0 233060.0 182660.0 196810.0 221690.0 188630.0 172120.0 155780.0 292990.0 190210.0 False True 136630.41518324165 240817.26121225467 208376.94029081814 221726.125820616 249920.90744042356 175590.4520872583 163793.89803774827 167405.09463481186 220786.5403648576 178070.634953026 0.7672821249796968 1.3523693071335479 1.1701926055679353 1.245158281594863 1.4034930998384503 0.9860719154147907 0.9198254281563951 0.940105002034571 1.2398818054593888 1.0 17.442090100362172 2.672219805447441 24.99481003779329 0.9993138074134812 1.199067944200766 0.1792629931254508 0.1795998291640483 280.64785831096566 105737.26545640852 0.05633951591001452 0.053117408178443445 470.1319919560743 -2.672219805447441 0.1997541367872847 GRPPAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRPPAEK 7 1 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;K7EP28;A0A2R8YF38;A0A0U1RQW7;A0A0U1RRD6;A0A0U1RRF8;A0A0A0MSS5;F6UH26;A0A0U1RR09;A0A0U1RQU0;F6XE55;A0A0U1RRN2;A0A0U1RR83;A0A0U1RQX3;A0A0U1RRJ4;F6VDE0;P51531-2;P51531;A0A0U1RQZ9;A0A0U1RRG6;B1ALG1;F6T8Q0;B1ALG2;A0A0U1RR26;A0A1W2PS06;B4DNT1;B1ALF6 A0A2R8Y4P4;F6VDE0 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 0 ; 101.28 0.0083652 100473000.0 167643.0 193140.0 163219.0 158112.0 181806.0 147905.0 209306.0 201906.0 290180.0 224901.0 False True 166740.42871488817 199568.5481444044 186198.81647501947 178128.96298841163 204957.91645141243 137680.67548091977 199181.06915343288 216973.25097789365 218669.02721278707 210547.62563256666 0.7919368751556105 0.9478546601740254 0.8843548623054098 0.8460269378637882 0.973451568668321 0.6539170179063937 0.9460143212492459 1.0305186312408983 1.0385727531042945 1.0 17.683787080613797 2.0041522461465835 24.9999693615658 1.0168827104954352 0.8560102139011453 0.469747870973825 0.08307793558853754 103.57821985520955 623622.8764180178 0.030257706691724565 0.02225373580490752 100.96067514951656 -2.0041522461465835 -0.16087249659428993 GRPPAEKLS(ph)PNPPNLTK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRPPAEKLSPNPPNLTK 17 2 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;K7EP28;A0A2R8YF38 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 1 GRPPAEKLS(1)PNPPNLTK;GRPPAEKLS(1)PNPPNLTK;GRPPAEKLS(1)PNPPNLTK 115.76 0.00015607 11590900000.0 1848730.0 1423750.0 1426070.0 1207840.0 1256740.0 1922020.0 1824120.0 1829780.0 2442900.0 1853160.0 True False 1838776.643093211 1471138.658074949 1626848.2603773524 1360752.4201573739 1416778.389718427 1789155.2813484177 1735880.3467849016 1966327.475034573 1840880.0281829108 1734889.7422299013 1.059880981675401 0.8479724228376924 0.9377242949666184 0.78434518749783 0.8166388648407149 1.031278955542597 1.0005709899199282 1.1334019835215572 1.0610933844226764 1.0 20.726412547175155 2.6099868840356217 5.024650616271181 1.0601150886664774 0.8843675994067803 0.4910726917065056 0.07896211605828987 0.18241906870176638 6.704930634500397 0.026303259851796833 0.024653787038650163 407.36797485127363 -2.6099868840356217 -0.17574748925969708 GRPPAQALGPAAS(ph)PPPS(ph)PPLGPSLG ddPTM_BT-474_Trastuzumab_2h_R1 2 GRPPAQALGPAASPPPSPPLGPSLG 25 1 H7C0J3;H7C3H7 H7C0J3 CHD3 2 GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG;GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG 124.97 8.3471e-05 488450000.0 236160.0 285680.0 292270.0 279110.0 257800.0 316490.0 291090.0 301120.0 317710.0 307310.0 True False 234888.5407998428 295188.68610279326 333419.0755436189 314445.2973822073 290629.3018996855 294611.7912373232 277008.8646282132 323591.1034563774 239414.6275958871 287697.21269867243 0.8164435748143996 1.026039436857413 1.1589235516606637 1.0929730407626514 1.010191580146048 1.0240342215129241 0.9628486214023424 1.1247627337818509 0.8321756938488125 1.0 18.13419171829718 1.2365811084954992 24.999800613805203 0.9160878851603801 1.034132157921931 0.16944679703094156 0.09723263853855245 87.28086152656199 1102153.8536851848 0.0776510984151755 0.02313464737497608 17.241740663512022 -1.2365811084954992 0.11804427276155083 GRPSKT(ph)PS(ph)PSQPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GRPSKTPSPSQPK 13 2 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 GRPS(0.157)KT(0.843)PS(0.976)PS(0.024)QPK;GRPS(0.363)KT(0.637)PS(0.927)PS(0.073)QPK;GRPS(0.341)KT(0.659)PS(1)PSQPK 163.8 4.2064e-05 877530000.0 1559060.0 934520.0 787530.0 825350.0 783840.0 1488040.0 1455380.0 1288800.0 2316970.0 1407950.0 True False 1550666.1941878514 965624.9332707316 898407.3786665287 929839.2253749577 883657.3778163276 1385175.297269381 1384977.7093084934 1384976.8003937951 1745983.7893073652 1318093.4255933606 1.1764463459711094 0.7325921778541914 0.6815961306097074 0.7054425788948729 0.6704057244034393 1.050893108465223 1.050743204098013 1.0507425145302776 1.3246282512344547 1.0 20.330021200568012 2.6349881915963 5.413259904209025 1.0956357141544866 0.7795932431543128 0.47442970197494927 0.1590909338926856 0.20218975213250293 8.68680097899674 0.0523485943987153 0.04923140858343101 431.507344046432 -2.6349881915963 -0.3160424710001738 GRPTSTNPIASIFAWTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRPTSTNPIASIFAWTR 17 1 P48735;P48735-2;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ; 198.96 1.2518e-11 774670000.0 338470.0 488710.0 490900.0 420020.0 523950.0 774540.0 447700.0 349480.0 518960.0 500070.0 False True 336647.7151275523 504976.41691856616 560014.4530207093 473194.48893437965 590671.9268050437 720997.872871044 426043.04061991535 375559.97222348204 391069.26170772617 468155.10446853307 0.7190944025051851 1.0786519512413177 1.196215629553924 1.0107643480072004 1.261701348905714 1.540083331334275 0.9100467698703726 0.8022127039495416 0.8353412319442344 1.0 18.83662706273933 2.025652707089992 24.984154976233864 0.8569383475319028 1.1423748900010087 0.26735193624861064 0.1999464728379759 269.76088426851476 262729.295057007 0.077213472239317 0.05702423556260727 106.08468889169924 -2.025652707089992 0.2854365424691059 GRPVS(ph)PQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRPVSPQSR 9 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 GRPVS(1)PQSR;GRPVS(0.98)PQS(0.02)R 72.29 0.028565 210819000.0 63123.0 96973.0 77578.0 82034.0 81966.0 73297.0 84588.0 71288.0 72342.0 74055.0 True False 62783.15278162463 100200.68768358366 88500.3080799359 92419.49598886447 92403.88424945534 68230.15091257886 80496.15528246017 76607.8725531291 54514.28343313615 69328.74649832476 0.9055861522484284 1.4452978417257967 1.276531201701078 1.3330616902340455 1.3328365060182958 0.9841538230354063 1.1610790523149765 1.1049943410556287 0.7863157230810948 1.0 16.08116605559614 1.9553961161525577 0.9275072896855309 0.9306583689988771 1.2630604067264213 0.35299749719353546 0.16315212817973276 0.6064831880636234 0.961168014635649 0.13191377144703198 0.061865846675759215 90.23938277870178 -1.9553961161525577 0.3324020377275442 GRPYDYNGPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GRPYDYNGPR 10 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;;;;; 156.16 1.0427e-05 5460170000.0 3122600.0 3613760.0 3363800.0 3386170.0 2999620.0 3304550.0 3612640.0 3143620.0 4429280.0 3478350.0 False True 3105788.2685534745 3734041.8170359484 3837393.8013262562 3814858.7748081665 3381603.826859329 3076114.2365739723 3437882.801575006 3378212.887378911 3337743.2933112276 3256358.7250347445 0.9537610966127009 1.146692404718435 1.1784309178913672 1.1715106033864444 1.0384617029019885 0.9446484543993693 1.0557444961897817 1.0374203742994765 1.0249925070142925 1.0 21.634828206987812 3.095786707477979 6.810547839061716 1.0175719656554643 1.1192270270123466 0.34627281009950317 0.0647597226837907 0.24618673873943187 14.962757316290173 0.019115325535724557 0.02291986575685274 1246.7710444469774 -3.095786707477979 0.10165506135688229 GRPYGYPAVCEEDLMPEDDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRPYGYPAVCEEDLMPEDDQR 21 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 0 91.319 0.0018539 79440000.0 20802.0 20618.0 21111.0 17866.0 19306.0 26500.0 20667.0 23935.0 33413.0 23633.0 False True 20690.004343319466 21304.257666155798 24083.245299898546 20127.833768157743 21764.504664372867 24668.117374290086 19667.25825439309 25721.151239467312 25178.813861261442 22124.721706770742 0.9351532018135074 0.9629164130745265 1.0885219538164155 0.9097440426560529 0.9837187989448184 1.1149571823423658 0.8889268084386525 1.1625525319758472 1.1380397997754732 1.0 14.433371688088053 1.70140413084844 10.760779022927938 1.1114649572858826 0.9889838894672901 0.31275375064237954 0.07840687742194043 0.12494276666892173 26.797981261789538 0.0353174804107958 0.019180263344949863 50.28102598030655 -1.70140413084844 -0.12248106781859247 GRRPS(ph)GPDGAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRRPSGPDGAAR 12 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C528 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 GRRPS(1)GPDGAAR 61.165 0.06834900000000001 53093000.0 38830.0 60557.0 52741.0 72382.0 57003.0 41010.0 45794.0 42225.0 50644.0 43775.0 True False 38620.94359441859 62572.60313752048 60166.47436701001 81545.55377850625 64261.99416674852 38175.07522715611 43578.76926993165 45376.04391420547 38163.46479483212 40981.242022336985 0.9424053954579535 1.5268596081937935 1.4681466787711324 1.989826314538235 1.5680831276836917 0.9315255795895262 1.0633833217201878 1.1072393532990796 0.9312422686952967 1.0 15.322676088454806 2.742221719105372 24.880798838817196 1.0257413777226487 1.5261553503863803 0.5055626103544302 0.24236468516789877 256.1348212810578 1740691.0150068465 0.07781285723780083 0.07964290588685607 552.3593617370014 -2.742221719105372 0.5004139726637316 GRS(ph)ECDS(ph)S(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 GRS(1)ECDS(1)S(1)PEPK;GRS(1)ECDS(1)S(1)PEPK 152.34 5.6846e-05 453710000.0 1473450.0 1339820.0 1000950.0 990990.0 987370.0 1588750.0 1313030.0 1135890.0 2125700.0 1360520.0 True False 1465517.1089156861 1384415.0987617066 1141875.0595866332 1116449.2323915071 1113105.7168995035 1478923.452015223 1249513.7226383 1220655.8797325487 1601849.7179206721 1273690.4488002253 1.1506069707095279 1.0869321506381557 0.8965090855963018 0.876546757057938 0.873921695768397 1.1611325604335971 0.9810183658166716 0.958361492686364 1.2576444452649873 1.0 20.280583264308774 2.742861336988375 24.943428823143492 1.0523278794239213 0.9729743396910658 0.12757540895772768 0.11838186972540025 968.6368179018497 5617945.089574257 0.03881699138992061 0.039898226105386236 553.1734619223699 -2.742861336988375 -0.07935353973285542 GRS(ph)ECDSS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GRS(1)ECDS(0.019)S(0.981)PEPK 97.502 0.00058134 0.0 236710.0 230920.0 191510.0 210500.0 169380.0 256140.0 241190.0 219010.0 371430.0 282870.0 True False 235435.57966095358 238606.0326059123 218472.94336523936 237149.2784169486 190949.53900608476 238433.6446887045 229522.7182647249 235353.63831024594 279896.0534070073 264816.9944228092 0.8890501161910137 0.9010223574433888 0.824995932913669 0.8955213729157953 0.7210622544156399 0.9003713874496255 0.8667220121767066 0.8887406898610071 1.0569414323920718 1.0 18.01463618337495 1.3418450043989179 4.078872664023859 1.0281609833153278 0.8570847424464365 0.6181929247244792 0.052917184123534 0.13638696181275237 3.578417692282862 0.039650986456089846 0.013155317795872588 21.970756172978717 -1.3418450043989179 -0.17107624086889128 GRS(ph)IDQDYER ddPTM_BT-474_Trastuzumab_2h_R1 6 GRSIDQDYER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER 190.24 5.592300000000001e-07 4453060000.0 1716851.0 1759995.0 1786226.0 2003683.0 1859781.0 1906477.0 1857610.0 1722373.0 2221760.0 2107249.0 True False 1707607.6649760762 1818575.369635557 2037711.0946452834 2257349.062357752 2096613.0865643863 1774686.7323541285 1767750.307540678 1850905.2192928777 1674237.0180587277 1972762.5647133668 0.8655920867112478 0.9218419905995061 1.0329226289537552 1.1442578558285519 1.0627802473882682 0.8995946922847161 0.8960785951438225 0.9382301004691893 0.8486763931988879 1.0 20.911785897750757 2.7234150441964977 24.55232660973184 0.9131906874820427 1.0100670508192708 0.23819372486954238 0.07922594847282977 972.8932011443735 1577144.4547166287 0.0278109932122088 0.026313180702484902 528.9505148642021 -2.7234150441964977 0.09687636333722816 GRS(ph)KDRDPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSKDRDPNR 10 3 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 GRS(1)KDRDPNR 67.997 0.072773 34131000.0 50938.0 50644.0 42455.0 51427.0 52292.0 48773.0 61618.0 52898.0 90408.0 56481.0 True False 50663.75546774384 52329.65492505553 48432.29497452477 57937.65292707089 58951.07624103314 45401.43730929251 58637.30193638141 56845.51737060133 68128.15980513346 52876.33422418308 0.958155594768381 0.98966117248579 0.9159540971426527 1.0957199241806177 1.114885838929276 0.8586343583653362 1.1089517228590997 1.0750653993824506 1.288443323553525 1.0 15.690334541646378 2.0403060111726465 24.99961929743667 1.1201349868064447 0.9951182431298461 0.2950160113543451 0.09774823989463026 195.11250969904336 121016.852619281 0.03592717380518974 0.026533948428480763 109.72510653183268 -2.0403060111726465 -0.12501674367659865 GRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_BT-474_Trastuzumab_2h_R1 31 GRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 32 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0;M0R0K8;M0QYI8 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.998)PQPPAEEDEDDFDDT(0.002)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.999)PQPPAEEDEDDFDDT(0.001)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.991)PQPPAEEDEDDFDDT(0.008)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.996)PQPPAEEDEDDFDDT(0.004)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK 402.27 3.6727999999999977e-186 51086482500.0 2570572.0 2558072.5999999996 2292692.2 2147000.9 2335886.8 2674024.1999999997 2189262.6 2436453.3 3524310.0 2647378.6999999997 True False 2556732.3259693985 2643216.5001034588 2615483.3333221585 2418810.993803036 2633348.138094222 2489175.2010298935 2083359.60424271 2618273.8173051723 2655791.0238345065 2478420.7248310666 1.0315973798773288 1.0664922519495252 1.0553023976590716 0.975948502031634 1.0625105381467126 1.0043392455893703 0.8405996541949976 1.0564283097994343 1.0715658553151945 1.0 21.240989682591888 2.489512501449149 24.83369259860367 0.9882557043502147 1.0370073132328594 0.11007973752414768 0.06256217309692513 1273.48876405907 2552244.7620410556 0.021504481061666338 0.019318863022567526 308.6828500771203 -2.489512501449149 0.04875160888264474 GRS(ph)PSQYHDFAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSPSQYHDFAEK 13 1 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 GRS(0.997)PS(0.003)QYHDFAEK 111.33 0.00059698 107720000.0 122890.0 132040.0 129040.0 109020.0 117930.0 130260.0 147820.0 148150.0 161660.0 127150.0 True False 122228.37389436258 136434.8715801344 147207.71036421324 122821.92082192769 132947.68647412668 121255.43279905774 140669.38187276275 159205.70529045662 121821.05913301783 119035.1781414082 1.0268256477019004 1.146172700460499 1.2366740039598831 1.0318119629814055 1.1168772840932035 1.0186520883348615 1.181746304488696 1.337467694645088 1.0234038461159787 1.0 16.861028466711353 2.0688359954374667 24.999601810025833 1.1832431655910576 1.1026236149528046 0.0 0.10990537161996947 114.08111262559846 41429.80643139806 0.04097288299813132 0.030260474612250544 117.17527877547975 -2.0688359954374667 -0.08061955063825299 GRS(ph)RT(ph)PPTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSRTPPTSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 GRS(1)RT(0.979)PPT(0.002)S(0.019)R 75.96 0.041306 2189700000.0 1834100.0 2331300.0 1794500.0 2520800.0 2309000.0 2228100.0 2260900.0 2122800.0 2524200.0 2203000.0 True False 1824225.4093876686 2408895.9111993914 2047150.001926386 2839933.0215365537 2603037.4634847664 2074076.6913832347 2151531.6295232666 2281214.115359984 1902144.7325470983 2062402.6539168092 0.8845146731765464 1.1680046603045917 0.9926044257354614 1.3770022144526912 1.2621383407072384 1.0056604065381 1.0432160884961956 1.1060954130502203 0.9222955221351382 1.0 20.975894594609493 2.697670744545127 24.72305936375574 1.0312146973746883 1.1439114479447032 0.16546126580319354 0.13353345282622228 916.3096988397417 554022.8943613308 0.04420098782461421 0.0416737010973345 498.50640715891626 -2.697670744545127 0.11269675057001494 GRS(ph)TDEY(ph)S(ph)EADEEEEEEEGKPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSTDEYSEADEEEEEEEGKPSR 23 2 Q96T23-2;Q96T23;Q96T23-3 Q96T23-2 RSF1 Remodeling and spacing factor 1 3 GRS(0.915)T(0.087)DEY(0.998)S(1)EADEEEEEEEGKPSR 89.65899999999998 0.01029 266610000.0 543100.0 364970.0 369610.0 335650.0 334970.0 528720.0 450640.0 440480.0 728900.0 465650.0 True False 540176.0099440829 377117.80582097586 421647.875292288 378143.25558503025 377626.4439772596 492170.8308730056 428840.82158802496 473350.85431211843 549272.3617595985 435931.8183369784 1.2391295776591444 0.8650843777809794 0.9672335387235974 0.8674366946363223 0.8662511615184549 1.1290087352434415 0.9837337022656327 1.0858369001783093 1.2599960329920379 1.0 18.73374298320253 2.0915389203781047 1.3301576037918352 1.1213780183002402 0.9606588290264502 0.16651775590607254 0.12808694931383652 0.7011355891258794 2.3350587252634267 0.08417592952587719 0.04257723104323514 123.46359551790066 -2.0915389203781047 -0.16071918927379003 GRS(ph)YDSSMESR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSYDSSMESR 11 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 GRS(0.949)YDS(0.032)S(0.018)MESR 78.28699999999998 0.079689 99567000.0 124320.0 144410.0 128340.0 136580.0 129790.0 143040.0 126030.0 119590.0 158880.0 139730.0 True False 123650.67493325034 149216.5995523114 146409.15644872238 153871.01399613728 146317.98717439923 133151.98147994184 119933.44741864638 128514.41306571545 119726.15288292646 130812.31177112833 0.9452525779805182 1.1406923211737408 1.1192307089938338 1.1762731803513486 1.1185337617945315 1.0178856995731949 0.9168360821302829 0.9824336205491626 0.9152514106806826 1.0 16.99713880499191 2.542910913067459 3.5848719360847023 0.954525591649384 1.1069658261310038 0.5516691604832407 0.06202478770616615 0.172971184300747 4.362040086167967 0.021211126281639993 0.019204594152023052 349.068703586017 -2.542910913067459 0.1524402344816198 GRSPGQLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRSPGQLQR 9 1 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7;Q9C040;Q9C040-2 O75382 TRIM3;TRIM2 Tripartite motif-containing protein 3;Tripartite motif-containing protein 2 0 61.679 0.079886 511010000.0 158170.0 182220.0 202550.0 186550.0 200630.0 198200.0 236350.0 201150.0 254340.0 198300.0 False True 157318.4302943389 188285.08254568398 231067.27940383914 210167.21087259767 226179.04127282344 184498.90051261475 224916.84755532062 216160.83441900372 191661.3149813916 185644.32422682876 0.8474184758922122 1.0142248265862879 1.2446773170480048 1.1320960753737115 1.218346115426979 0.9938300095142447 1.2115471264314384 1.1643815953936114 1.0324113908659605 1.0 17.502181682250097 4.551796843907415 3.603542597832137 1.1356783646790394 0.8561812899944287 0.4854634452022918 0.08713506130002172 0.18256072016547287 4.233389187564851 0.019943626482209223 0.10060274432572835 35628.44302150025 -4.551796843907415 -0.2794970746846107 GRVEDVVVSDECR ddPTM_BT-474_Trastuzumab_2h_R1 2 GRVEDVVVSDECR 13 1 Q96EK6;G3V5E4;G3V4W4 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase 0 ; 154.65 4.2229e-05 749060000.0 246045.0 287700.0 249287.0 275820.0 227760.0 260590.0 266360.0 199126.0 305340.0 256629.0 False True 244720.32105816941 297275.9205816775 284384.44275855285 310738.7837195386 256763.8859607147 242576.02666287753 253475.1492059873 213985.79326133974 230093.0483463794 240250.71750885938 1.0186039134270024 1.237357056262341 1.1836986199554889 1.2933937802207809 1.0687330661197563 1.0096786772507034 1.0550442963677737 0.8906770205730974 0.9577205459871085 1.0 17.87418121405156 2.889250278195098 2.537004533791339 0.9712416863680761 1.1868001315711327 0.5891214121988214 0.07771351433428599 0.18991902839824965 2.3934200965068233 0.02567456918497845 0.027998647033153988 774.9082385721687 -2.889250278195098 0.21555844520305667 GRVS(ph)VPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GRVSVPLR 8 1 Q6A1A2 Q6A1A2 PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2 1 GRVS(1)VPLR 67.032 0.036425 2820400000.0 1127500.0 1491900.0 1241600.0 1307900.0 1235100.0 1414500.0 1308900.0 1110300.0 1755700.0 1373800.0 True False 1121429.6652770254 1541556.9896274046 1416406.4878193385 1473480.0058979923 1392382.6639887574 1316718.9443748437 1245583.506516433 1193156.223989161 1323031.2601746847 1286122.9078306456 0.8719459535703203 1.198607831523357 1.101299478607723 1.1456758890823036 1.082620218885102 1.0237893566453968 0.9684793723310692 0.9277155524752333 1.028697375747932 1.0 20.294597089163286 2.5385518887912486 2.6589413784020466 0.9702875543896097 1.0917180744643136 0.23037950533792007 0.08303715836543872 0.3355436475189579 4.71175649587658 0.029247794049096866 0.025856401030006585 345.58261675467185 -2.5385518887912486 0.1214305200747039 GRYPDHS(ph)VDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 GRYPDHSVDRR 11 2 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 GRYPDHS(1)VDRR;GRYPDHS(1)VDRR;GRYPDHS(1)VDRR;GRYPDHS(1)VDRR 182.02 3.1156e-06 3894920000.0 907680.0 906750.0 714725.0 750456.0 652308.0 619578.0 745152.0 794190.0 726722.0 846550.0 True False 902793.1517327292 936930.6256080511 815352.0674989339 845463.6526540137 735375.5572675718 576748.0311897327 709106.1510029281 853456.4906151044 547631.100675894 792522.4542320821 1.1391388936828222 1.1822133500506227 1.0288062668066265 1.0668008813368313 0.9278923938882173 0.727737148783469 0.8947458172526095 1.076886195536333 0.6909975834142432 1.0 19.59609228558836 3.4995366602090465 1.6443926066148284 0.8956387314389506 1.1387397038311382 0.47653362187742276 0.11270079869909827 0.3605338168122746 1.9538801180086751 0.03656296096451562 0.06596884593013011 3158.9056906677424 -3.4995366602090465 0.24310097239218764 GRYPDHSVDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 GRYPDHSVDRR 11 2 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 0 ;;;; 195.25 8.850400000000002e-08 201246500.0 116151.7 170510.4 169707.0 176475.0 142434.0 130631.7 145298.7 115821.3 207644.0 150547.9 False True 115526.35215286717 176185.73558828645 193600.27048031284 198816.71690561075 160572.12562753996 121601.43805294536 138270.04678606422 124464.47353464448 156472.91848704923 140939.80413145828 0.8196857719847027 1.2500779086080847 1.3736379986716651 1.410649873758652 1.1392957909730745 0.8627898896434146 0.981057463774365 0.8831037782524033 1.1102109829888993 1.0 17.10471958866279 2.934365245996784 5.63788804537947 0.9571716935346657 1.2332276599435958 0.34021423482923185 0.1621934866115237 0.22934216008378322 14.221271699587044 0.050687949274327286 0.054535984142927804 859.7362643307216 -2.934365245996784 0.27605596640893015 GS(ph)DESIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSDESIGK 8 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 GS(0.5)DES(0.5)IGK;GS(0.5)DES(0.5)IGK 71.029 0.052239 673940000.0 967890.0 2194400.0 2135700.0 2541300.0 2186200.0 1586200.0 1713910.0 1315820.0 869910.0 1672030.0 True False 962678.9877826883 2267439.27745719 2436387.9961628234 2863028.31943464 2464599.611377394 1476549.7275131692 1631001.6255279845 1414013.1699985731 655532.3366967939 1565319.6139030966 0.6150047435886051 1.4485471576014886 1.5564795678294308 1.8290375294638581 1.5745024782714876 0.9432896096097708 1.0419607670162077 0.9033383070392611 0.41878497584415725 1.0 20.578025832433838 2.6511372091394296 4.98034995449809 0.8657434843310562 1.4382130118712624 0.39708349552433553 0.3341045565171178 0.23791673963909118 9.999233668417718 0.11364797589078744 0.10715175427859612 447.8547751477459 -2.6511372091394296 0.5724695275402062 GS(ph)FSSENYWR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSFSSENYWR 10 0 Q6P6C2-3;Q6P6C2;Q6P6C2-1;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 GS(0.877)FS(0.12)S(0.003)ENYWR 252.69 4.8239e-17 561000000.0 420180.0 327440.0 342130.0 404450.0 369290.0 379560.0 356980.0 306000.0 399060.0 341100.0 True False 417917.79756638664 338338.64245833975 390298.9301527298 455653.3285308069 416316.8925466827 353321.9105881343 339711.5136039703 328835.2738365158 300717.01013003883 319330.70596959756 1.3087303843751725 1.0595242992089582 1.222240526377344 1.4269010778255322 1.3037170706230765 1.1064451491294198 1.0638235135343141 1.0297640273523307 0.9417102850067576 1.0 18.28469175963465 2.453671033009952 2.4230175813990504 1.0107370122247137 1.2583866831355623 0.6366882756712596 0.09109951285363961 0.21491865306063926 2.566635332054416 0.03858209037729655 0.031868604037699144 284.2307316552512 -2.453671033009952 0.24764967091084866 GS(ph)GGGGGGGGQGSTNYGK ddPTM_BT-474_Trastuzumab_2h_R1 5 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK 316.09 2.6200999999999996e-61 1062424000.0 851447.0 815768.0 763955.0 786745.0 814935.0 785906.0 839629.0 811476.0 1016500.0 900698.0 True False 846862.9039566541 842920.3447378298 871513.2235841028 886346.8363332173 918712.1417518236 731578.16804373 799012.9375757393 872032.4597116341 765997.1954021574 843214.6825136463 1.004326562995953 0.9996509337634645 1.0335603039858103 1.0511520431439747 1.0895352758957153 0.8676060595421266 0.947579488528188 1.0341760856346585 0.9084248783698815 1.0 19.685540462623045 2.7576916040501946 24.99488437733775 0.9600093758292649 1.034391030416494 0.4202010905209448 0.04887438052838639 967.732684032648 1264353.343165048 0.015691755440211893 0.016621876633005413 572.3894283724899 -2.7576916040501946 0.07438165458722912 GS(ph)GGLFSPSTAHVPDGALGQR ddPTM_BT-474_Trastuzumab_2h_R1 5 GSGGLFSPSTAHVPDGALGQR 21 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR 249.35 7.523699999999998e-31 7896130000.0 1963330.0 2558430.0 2570240.0 2729410.0 2711070.0 2865960.0 2842550.0 2502850.0 2794540.0 2829210.0 True False 1952759.649426471 2643585.795946403 2932107.4510734337 3074953.0261472887 3056308.6947291726 2667842.930944169 2705044.996904491 2689625.376214783 2105863.061917506 2648647.395591459 0.7372667470486037 0.9980889869850247 1.1070206838229129 1.1609522019674625 1.1539130122855332 1.0072472973883424 1.0212929819978693 1.0154712857179593 0.7950711240094133 1.0 21.336824365281316 -0.8598953655202431 7.5380995403903 0.9999910439295848 1.0135225788994446 0.0 0.1321237819485858 0.0 0.0 0.12879793322589095 0.030357963995613222 0.13807168803653466 0.8598953655202431 0.013531534969859815 GS(ph)GSALGGPLDPQFVGPSDTSLGAAPGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSGSALGGPLDPQFVGPSDTSLGAAPGHR 29 0 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 1 GS(0.996)GS(0.004)ALGGPLDPQFVGPSDTSLGAAPGHR 197.04 2.7566999999999996e-25 343580000.0 191670.0 190390.0 181870.0 195460.0 189540.0 212230.0 217680.0 191680.0 187050.0 194850.0 True False 190638.0700165389 196727.01605681484 207475.71515762154 220205.21595903445 213676.7955084034 197559.0396356826 207149.98678164676 205984.13493131788 140954.03384158717 182414.50618052218 1.0450817427199484 1.078461467653941 1.1373860527972381 1.2071694327923328 1.1713805002818318 1.083022637685256 1.1356004032740998 1.129209179929312 0.77271285487622 1.0 17.476860936190285 1.2559082860886002 24.97326380904797 0.8863564755330716 1.126142816934409 0.6644810641458306 0.06735764822990642 111.07855553982162 159907.01270462424 0.0435348504246633 0.015815973118971198 18.026370214238437 -1.2559082860886002 0.23978634140133737 GS(ph)GSLWEVDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSGSLWEVDLR 11 0 Q5FC08 Q5FC08 IL4R 1 GS(0.5)GS(0.5)LWEVDLR 74.464 0.042746 376670000.0 23359.0 49864.0 36288.0 37349.0 28643.0 34129.0 28431.0 32648.0 45353.0 39729.0 True False 23233.237739428863 51523.69309657548 41397.03497904967 42077.37957052074 32290.516269638032 31769.742561024414 27055.68391303286 35084.35954318484 34176.360849064455 37193.46120629183 0.6246592004591015 1.3852890111732725 1.113019160799338 1.1313112091703559 0.8681772339105565 0.8541754795235375 0.7274311945040486 0.9432937512481304 0.9188808930555517 1.0 15.182761390279687 3.2328619870039286 24.88653412614217 0.8745196192268695 1.0900817183468485 0.171849643527488 0.1872227888514711 183.4899615299772 801320.3390099216 0.050918787987114716 0.062463688237926696 1709.4719813587935 -3.2328619870039286 0.21556209911997903 GS(ph)GSPTHSLSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSGSPTHSLSQK 12 0 I3L2R2;I3L419;I3L156;Q9BSJ6-2;Q9BSJ6 I3L2R2 FAM64A Protein FAM64A 1 GS(0.499)GS(0.499)PT(0.001)HSLSQK 152.16 4.4813e-05 381080000.0 441490.0 408950.0 374580.0 363420.0 343220.0 546410.0 571850.0 432830.0 649790.0 565160.0 True False 439113.06689415016 422561.6535345045 427317.6080922737 409428.93473770755 386927.03257567855 508637.96281078644 544187.4308208595 465129.97246620635 489657.96123990946 529091.0049421806 0.8299386358725503 0.7986559015129776 0.8076448174335741 0.7738346161875314 0.7313052555447662 0.9613430545211608 1.0285327585191675 0.8791114725472153 0.9254702058172763 1.0 19.013156365182216 2.727947111160219 24.858419916617287 0.951330581261133 0.7891262786129526 0.7838329345472246 0.04471018460160913 327.86233726880874 767901.5662696322 0.015120344628726582 0.014394292530583754 534.4992635496195 -2.727947111160219 -0.16220430264818042 GS(ph)IDEVDKR ddPTM_BT-474_Trastuzumab_2h_R1 5 GSIDEVDKR 9 1 Q9UNM6;J3KNQ3;A0A087WUL9;Q9UNM6-2 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 1 GS(1)IDEVDKR;GS(1)IDEVDKR;GS(1)IDEVDKR;GS(1)IDEVDKR;GS(1)IDEVDKR 86.014 0.0088354 6788060000.0 8635270.0 6739270.0 6802600.0 6039150.0 6230280.0 9113980.0 9415130.0 8495430.0 10393600.0 8538530.0 True False 8588778.66578868 6963582.527975252 7760346.950740827 6803705.770792002 7023669.228237278 8483952.014601232 8959684.19261065 9129402.125519436 7832236.547104635 7993593.705196681 1.074457744856993 0.8711454177922736 0.9708207893648361 0.8511448069181792 0.8786622747252153 1.0613439120737105 1.1208580924979845 1.1420898362127612 0.9798141907078481 1.0 22.930412815288168 2.6586345474573347 5.837384074543044 1.082131192273358 0.9242527795794095 0.4168489529085032 0.07582777715267738 0.18864144978448735 10.780519360714662 0.02432843032902595 0.022940747637110535 455.65332887810155 -2.6586345474573347 -0.15787841269394853 GS(ph)IGLLLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSIGLLLGK 9 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 GS(1)IGLLLGK;GS(1)IGLLLGK;GS(1)IGLLLGK 134.57 0.00025732 269284000.0 1104432.0 701246.0 621760.0 633882.0 548168.0 727779.0 570315.0 598270.0 1139251.0 758400.0 True False 1098485.8608259307 724586.5491978417 709298.4035651996 714131.3962066137 617973.9455537105 677469.3507374895 542726.6846351291 642915.9453535044 858497.8562312863 709998.262701094 1.5471669700245283 1.0205469326660723 0.999014280495234 1.0058213290407159 0.8703879685602479 0.9541845189312822 0.7644056516003258 0.9055176317018243 1.2091548688657987 1.0 19.437455968919508 5.190074316615733 1.494590587437178 0.940170639831181 2.7294166621831857 0.7100459564883633 0.11026173815579988 2.015307186420117 1.6613508979914724 0.029409192872782913 7.439003095431312 154908.16756034645 -5.190074316615733 1.7892460223520046 GS(ph)LAS(ph)LDSLR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSLASLDSLR 10 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 2 GS(1)LAS(1)LDSLR;GS(1)LAS(1)LDSLR;GS(1)LAS(1)LDSLR;GS(1)LAS(0.999)LDS(0.001)LR;GS(1)LAS(0.999)LDS(0.001)LR;GS(1)LAS(1)LDSLR 143.31 5.0005e-05 4855300000.0 6172320.0 5517060.0 5053870.0 5835670.0 4652540.0 7042700.0 5003500.0 4860130.0 7875980.0 5402210.0 True False 6139088.914929219 5700692.00696681 5765410.966974474 6574465.223655281 5245013.391234916 6555854.725732566 4761461.58977383 5222817.579840084 5935050.261725015 5057436.332735326 1.2138736923276063 1.127190068625852 1.1399868604685406 1.2999600570551257 1.0370893563771544 1.2962802286404298 0.9414773170656174 1.032700608811285 1.1735294072431812 1.0 22.269974822362766 2.2329815709476404 24.999979389196586 1.0354008846882061 1.1794257784529858 0.3890133026135735 0.09114575951231531 141.69323810842621 634927.9948482467 0.031920182697822125 0.024231928812480142 170.99427530512537 -2.2329815709476404 0.14402489376477967 GS(ph)LAS(ph)LDSLRK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSLASLDSLRK 11 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 2 GS(1)LAS(0.996)LDS(0.004)LRK;GS(1)LAS(1)LDSLRK;GS(0.992)LAS(0.946)LDS(0.062)LRK;GS(1)LAS(0.503)LDS(0.497)LRK 124.62 0.0012085000000000002 938410000.0 2573340.0 1924680.0 1671040.0 1938720.0 1592240.0 2669390.0 2047530.0 2152720.0 3841760.0 2269160.0 True False 2559485.4233649513 1988741.8103063689 1906307.9070599428 2184161.7532185605 1795002.3260541311 2484861.3523681588 1948483.1515758217 2313366.8976906645 2895009.724946569 2124340.2660743846 1.2048377862246527 0.9361691448712258 0.8973646724602418 1.0281600307161345 0.8449693086932611 1.1697096703627377 0.9172180100772965 1.0889813344100407 1.3627806106110871 1.0 21.018583437566544 1.4877287631853184 6.162342174623513 1.196152317644538 0.9959960632814425 0.22266919936069152 0.13553236260010093 0.16756334772509204 15.180887456589955 0.07263766002727598 0.031868954148976426 30.74176251055149 -1.4877287631853184 -0.2001562543630956 GS(ph)LASLDSLR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSLASLDSLR 10 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 1 GS(1)LASLDSLR;GS(0.978)LAS(0.022)LDSLR;GS(0.848)LAS(0.152)LDSLR;GS(0.988)LAS(0.012)LDSLR;GS(0.984)LAS(0.016)LDSLR;GS(0.984)LAS(0.016)LDSLR 229.68 1.5815000000000002e-09 8655590000.0 2656980.0 3082680.0 2975470.0 3151510.0 2598510.0 2842140.0 2864460.0 2609510.0 3848110.0 2897790.0 True False 2642675.114898229 3185285.140280586 3394390.312751132 3550490.8428683956 2929414.8459245553 2645669.5514779207 2725895.1265001628 2804244.8870232888 2899794.8525322126 2712850.561277167 0.9741322108262755 1.1741469234416675 1.2512264262551591 1.3087675722163188 1.0798290505708628 0.9752360079253247 1.004808434865227 1.0336894066524236 1.0689106484240087 1.0 21.37137814755866 3.0095365376166336 24.899850757724856 1.019721728928409 1.183674369336962 0.45135453984176466 0.08331581863383268 179.90349472474756 469722.898375255 0.024998389386052103 0.029842824180702537 1022.2015557924415 -3.0095365376166336 0.16395264040855295 GS(ph)LDESSLGFGYPK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSLDESSLGFGYPK 14 0 Q9BUZ4;Q2KJU6 Q9BUZ4 TRAF4 TNF receptor-associated factor 4 1 GS(0.951)LDES(0.004)S(0.045)LGFGYPK;GS(0.77)LDES(0.225)S(0.005)LGFGYPK;GS(0.997)LDES(0.001)S(0.001)LGFGYPK;GS(1)LDESSLGFGYPK;GS(0.951)LDES(0.045)S(0.004)LGFGYPK;GS(1)LDESSLGFGYPK 274.45 5.1166e-33 4661379000.0 2760790.0 2926290.0 2774790.0 2744580.0 2939800.0 3725940.0 3513220.0 3402570.0 4326710.0 3625420.0 True False 2745926.2133926037 3023689.793670341 3165456.3130929554 3092043.546591874 3314166.1044402467 3468374.537719333 3343272.126796287 3656487.051300365 3260450.2954436466 3394042.591721781 0.8090429448616934 0.8908815113414467 0.9326507336159076 0.9110208440322771 0.9764656791649119 1.0219007110219687 0.9850412999974351 1.0773250342287093 0.9606391809566645 1.0 21.69457323864796 4.588139044399605 0.49136423598224066 1.0257433673543668 0.698541567161708 0.7679239408183409 0.0342969255338851 1.7647205062460722 0.3664296272351303 0.022033968922755363 0.33015291005913444 38738.16497837681 -4.588139044399605 -0.32720180019265876 GS(ph)LENVLDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLENVLDSK 10 0 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 GS(1)LENVLDSK 85.42 0.01495 29059000.0 77956.0 69375.0 68315.0 66295.0 68018.0 62164.0 66553.0 68675.0 83095.0 77952.0 True False 77536.29355772588 71684.10493692684 77933.15819537536 74687.94020262055 76679.6891257284 57866.74899831584 63333.57713285063 73799.87722458392 62617.350665953905 72977.03662193517 1.0624752270965783 0.9822830338849399 1.0679134396634364 1.0234444101854792 1.0507372274236784 0.7929446258293593 0.867856247177541 1.011275335923978 0.8580418384258235 1.0 16.155154948152855 2.781450962369595 24.99982869664995 0.9122403148578709 1.035233417851217 0.5075231292068668 0.0645304465140439 428.7483707026039 249907.09670830308 0.01999285216904609 0.02120549711720469 604.5760827998716 -2.781450962369595 0.12299310299334609 GS(ph)LNEQIALVLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLNEQIALVLMR 13 0 B7Z2R7;Q5T8D3-4;Q5T8D3-2;Q5T8D3-3;Q5T8D3 B7Z2R7 ACBD5 Acyl-CoA-binding domain-containing protein 5 1 GS(1)LNEQIALVLMR 62.949 0.076328 13298000.0 15613.0 19929.0 18198.0 16186.0 20385.0 25605.0 19681.0 17498.0 22032.0 19717.0 True False 15528.941342767366 20592.324717665106 20760.12022014843 18235.14594041202 22980.908918638816 23834.98661768672 18728.95484127888 18803.789613043624 16602.508813674678 18458.64417942703 0.8412828803577597 1.1155924843394596 1.1246828325173794 0.9878919471634809 1.2449944153673025 1.291264211282206 1.0146441233291188 1.0186983090557256 0.8994435697600642 1.0 14.172008967882412 2.0201259560347924 24.98489130694328 0.9852613784756977 1.1081748522770614 0.18703467910786298 0.12123039817819446 409.8734136699834 508825.654091065 0.04679109543545506 0.03455397084202501 104.74322850154576 -2.0201259560347924 0.12291347380136364 GS(ph)LPSGTTIEWLEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLPSGTTIEWLEPK 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 GS(0.991)LPS(0.004)GT(0.004)T(0.001)IEWLEPK 103.39 0.0027574 0.0 19422.0 18973.0 15417.0 21459.0 18096.0 21933.0 23259.0 23359.0 29236.0 21620.0 True False 19317.434109987047 19604.5048355793 17587.579593033766 24175.70719975916 20400.41833660474 20416.82333472848 22133.87331199153 25102.16719459857 22031.179542329035 20240.193090186767 0.9544095762284447 0.9685927771649732 0.8689432711766425 1.1944405417495982 1.0079161915948152 1.0087267074851844 1.0935603832120995 1.2402138202312445 1.0884866287669266 1.0 14.304935432868536 3.584745492588111 0.7554843304265203 1.121246857907502 0.9189027498390391 0.2690804472397126 0.09143671218592896 1.0139609513160361 1.101920195207266 0.04622217424656529 0.13528621766077617 3843.6646768316023 -3.584745492588111 -0.2023441080684628 GS(ph)LTLTISGESPK ddPTM_BT-474_Trastuzumab_2h_R1 5 GSLTLTISGESPK 13 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(0.973)LT(0.027)LTISGESPK;GS(1)LTLTISGESPK;GS(0.999)LT(0.001)LTISGESPK;GS(0.55)LT(0.397)LT(0.053)ISGESPK;GS(0.978)LT(0.022)LTISGESPK 351.73 5.803799999999999e-76 2836450000.0 5362870.0 4609330.0 4370850.0 4071880.0 4126640.0 5404410.0 5096670.0 5116340.0 6859050.0 5537350.0 True False 5333996.903790867 4762748.762651172 4986227.687890748 4587379.590500737 4652143.143488426 5030815.857312728 4850124.600929874 5498147.271048095 5168729.034061158 5183951.582236152 1.0289441981034073 0.9187486972238869 0.9618584604410765 0.8849194514509571 0.8974125374607906 0.9704596537035233 0.9356037617229677 1.0606093023493115 0.9970635242375416 1.0 22.30562081293367 1.7533166970361216 24.9999619466925 1.0231760494919497 0.9395091443388769 0.41449357838046974 0.041562849696992255 4.279804978151588 7260.4413588644165 0.01886219268088336 0.01046013135431105 56.66523537035374 -1.7533166970361216 -0.08366690515307285 GS(ph)PDGSLQTGKPSAPK ddPTM_BT-474_Trastuzumab_2h_R1 8 GSPDGSLQTGKPSAPK 16 1 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 1 GS(0.901)PDGS(0.099)LQTGKPSAPK;GS(1)PDGSLQTGKPSAPK;GS(0.966)PDGS(0.034)LQTGKPSAPK;GS(0.895)PDGS(0.099)LQT(0.007)GKPSAPK;GS(0.966)PDGS(0.034)LQTGKPSAPK;GS(0.989)PDGS(0.011)LQTGKPSAPK;GS(0.97)PDGS(0.03)LQTGKPSAPK;GS(0.797)PDGS(0.202)LQT(0.001)GKPSAPK 193.76 1.9463e-10 18861980000.0 12550323.0 10725771.0 10111171.0 9138981.0 9365371.0 12434664.0 12456350.0 12501057.0 16098400.0 12642106.0 True False 12482753.455439983 11082771.803869525 11534735.988926157 10295975.05755918 10557995.483947072 11575084.94573056 11853788.762622025 13433949.352421215 12131165.027508197 11835275.971628528 1.0547074259496427 0.9364185364529815 0.9746064237603902 0.8699395841922609 0.8920785209619659 0.9780156350792581 1.0015642044205708 1.1350769838088288 1.0250006046828966 1.0 23.49659001103252 2.112762998380079 2.9948282013930734 1.0679049970095797 0.9438944848122772 0.3686903182580763 0.05830156962963511 0.22619018349795647 4.02624200621131 0.025878072317402624 0.017079762164472295 129.6471572104877 -2.112762998380079 -0.12401051219730252 GS(ph)PEEELPLPAFEK ddPTM_BT-474_Trastuzumab_2h_R1 8 GSPEEELPLPAFEK 14 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK 258.41 2.3288e-24 4385730000.0 2294540.0 2464120.0 2166540.0 2133100.0 2236060.0 2544120.0 2519400.0 2340170.0 2989340.0 2455770.0 True False 2282186.451587358 2546136.744608004 2471570.0000967328 2403150.241288327 2520808.9868340204 2368250.9726142976 2397526.9969573678 2514805.368542481 2252657.212103773 2299040.6561095254 0.9926690271973319 1.1074779116419016 1.075044059585777 1.045283925232961 1.0964612479275486 1.0301039985181868 1.0428380161899802 1.0938498898919329 0.9798248700463421 1.0 21.13260054814624 1.228298163065868 24.997836282544835 0.989912383918439 1.0628308514472613 0.41550974327263557 0.03337748771996641 202.08146885857835 492223.9694489495 0.02859091628706851 0.007464707780780118 16.91601895298789 -1.228298163065868 0.07291846752882225 GS(ph)PGGYLGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPGGYLGAK 10 0 O60551 O60551 NMT2 Glycylpeptide N-tetradecanoyltransferase 2 1 GS(1)PGGYLGAK 134.3 0.003982 0.0 508000.0 508690.0 485440.0 447490.0 465880.0 575260.0 608330.0 527470.0 692160.0 613960.0 True False 505264.98444410576 525621.4391404013 553785.7324798802 504142.1881178165 525207.0565128995 535493.630216382 578902.7538537261 566832.4898383878 521586.44246882165 574776.5471623988 0.879063328068163 0.914479621229032 0.9634800431817414 0.8771098796683764 0.913758675620608 0.9316553238994323 1.007178801417173 0.9861788770553882 0.9074595076013972 1.0 19.132641670569587 2.4184831580381947 5.695969579428042 0.9763600015361693 0.9120443921783521 0.4576780960294785 0.03366283935770002 0.18241552113172108 12.053508372434573 0.011793234283230007 0.009866582920186077 262.10973903759424 -2.4184831580381947 -0.06431560935781722 GS(ph)PHYFS(ph)PFRPY ddPTM_BT-474_Trastuzumab_2h_R1 36 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.035)FS(0.965)PFRPY;GS(1)PHY(0.004)FS(0.996)PFRPY;GS(0.999)PHY(0.006)FS(0.995)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.001)FS(0.999)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.002)FS(0.998)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.001)FS(0.999)PFRPY;GS(1)PHYFS(1)PFRPY 185.26 7.5489e-06 14454175800.0 1961971.2000000002 2283623.8 1974183.5 2254720.2 2113205.4 2250609.5 2232212.8 1910789.2 2452123.7 2179202.0 True False 1951408.1650546927 2359632.837703264 2252131.376889406 2540167.546138328 2382309.581740286 2095030.1626299012 2124232.1389830136 2053381.992894958 1847830.6709091598 2040123.4626513035 0.9565147407886196 1.1566127643259063 1.1039191588741306 1.2451048148023245 1.1677281426116655 1.026913420184503 1.0412272481893836 1.0064988862127118 0.9057445320038406 1.0 20.960225032092037 2.233471398270738 1.4947684104245655 0.9727644665026135 1.1296418184209265 0.42676431401763915 0.07553608763544878 0.3911501456299522 1.7168167017525744 0.044137864967719244 0.026184743695347526 171.18724326404552 -2.233471398270738 0.15687735191831298 GS(ph)PHYFSPFRPY ddPTM_BT-474_Trastuzumab_2h_R1 20 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(0.997)PHY(0.003)FSPFRPY;GS(1)PHYFSPFRPY;GS(0.998)PHY(0.002)FSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(0.999)PHYFS(0.001)PFRPY;GS(1)PHYFSPFRPY;GS(0.999)PHYFS(0.001)PFRPY;GS(1)PHYFSPFRPY 201.09 4.0081e-07 56257620000.0 8468282.3 11861288.6 11581820.2 10726955.5 8368420.9 9279209.3 10884075.900000002 8194918.800000001 12554772.7 9077321.600000001 True False 8422690.00901142 12256084.420750635 13212439.813174171 12084986.96644046 9434089.698098281 8637759.402000159 10357571.567509368 8806465.253810482 9460817.19342014 8497999.164001996 0.9911380133679478 1.4422317752946012 1.5547706652105606 1.4220979236657432 1.1101542276047305 1.0164462522649091 1.2188247336366689 1.036298672646988 1.113299379164062 1.0 23.01869177104901 3.2090302585487005 8.184016337240191 1.0866993415924187 1.373416360692662 0.4407668843940895 0.14825412639133484 0.19430572751711778 45.92661105809506 0.04283304692224925 0.05198584906484345 1618.1927778719166 -3.2090302585487005 0.2867170191002433 GS(ph)PIPYGLGHHPPVTIGQPQNQHQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPIPYGLGHHPPVTIGQPQNQHQEK 26 0 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 GS(0.999)PIPY(0.001)GLGHHPPVTIGQPQNQHQEK 99.372 0.0089861 116690000.0 149060.0 141030.0 138530.0 136560.0 150660.0 152420.0 146630.0 126220.0 216670.0 146530.0 True False 148257.47752212296 145724.0982955648 158033.81987565462 153848.48199818784 169845.65796821777 141883.56415808664 139536.94671900405 135639.17733217313 163274.58172925268 137178.32994935563 1.080764560822818 1.0622967807624144 1.1520319567529256 1.121521759704952 1.238137671095154 1.034300127508974 1.0171938000012042 0.9887799143075242 1.1902359635777124 1.0 17.065693071517515 GS(ph)PLAEGPQAFFPER ddPTM_BT-474_Trastuzumab_2h_R1 6 GSPLAEGPQAFFPER 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER 234.57 1.3808e-12 2359590000.0 280058.0 369858.0 312437.0 324304.0 304263.0 349159.0 328355.0 284264.0 310499.0 320727.0 True False 278550.19884536864 382168.499946118 356425.413848913 365360.8531483615 343009.08954190824 325022.46016187774 312471.21421208925 305477.22314334393 233980.68192343757 300257.92827180034 0.9277030599945345 1.2728006955412359 1.1870641215051232 1.2168233333630027 1.1423814568899862 1.0824775286788098 1.0406759815155762 1.0173827046019546 0.7792656242923015 1.0 18.195842815046813 1.9228646064288073 1.2270990455193065 0.9063375966650715 1.159085157485251 0.46232269205785825 0.1023884631241475 0.3813922792419188 1.0611682640679279 0.07535908776570178 0.033140584743775146 83.726821869841 -1.9228646064288073 0.25274756082017946 GS(ph)PLLGDHAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPLLGDHAVR 11 0 Q9C073;D6RJ87;D6RFX7 Q9C073 FAM117A Protein FAM117A 1 GS(1)PLLGDHAVR 99.991 0.0014168 0.0 34209.0 54234.0 49859.0 58611.0 58307.0 50256.0 53193.0 44184.0 39449.0 55576.0 True False 34024.82254497719 56039.14590485471 56878.71381780309 66031.14659047882 65732.05083733486 46781.92100989899 50619.851373006815 47481.234441805864 29727.322539517645 52029.09209899257 0.6539576450851813 1.0770732996499814 1.0932098086505802 1.2691197160397378 1.2633710907787994 0.8991492859588995 0.9729143702276318 0.9125901015429256 0.571359624783713 1.0 15.667030912239625 1.910236180925185 1.5420062018861744 0.8011071326495317 1.070927940560359 0.20385660358192603 0.19347822020601763 0.5814051491262398 2.580108486332478 0.1373130212577699 0.06153423151196978 81.3272675301211 -1.910236180925185 0.2698208079108272 GS(ph)PNTASAEATLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPNTASAEATLPR 14 0 Q6PJG6;Q6PJG6-3 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 GS(0.978)PNT(0.016)AS(0.006)AEATLPR 153.98 2.9004e-07 0.0 108730.0 145420.0 116970.0 131980.0 138400.0 137460.0 141070.0 112790.0 112130.0 127950.0 True False 108144.60976103878 150260.2167917536 133438.35927853407 148688.6544677856 156024.41963893108 127957.71374603451 134245.90516026673 121206.96253601488 84497.06396502102 119784.12145649389 0.9028292602230871 1.2544251689179753 1.11399038249823 1.2413052135778277 1.3025467628077887 1.0682360248600171 1.1207320597081427 1.0118783780539542 0.7054112259420855 1.0 16.870077152060695 1.5419555632245836 3.128864245649572 0.851197259455039 1.153870474474296 0.4524549721738953 0.12623941443696435 0.1744305221650538 3.768883549356871 0.08310751063416005 0.03179697321958778 34.830167517456154 -1.5419555632245836 0.30267321501925704 GS(ph)PPRPPPPPPLLGT(ph)VSSPS(ph)SSPTHLWTGEVSAAPPPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 39 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 3 GS(0.99)PPRPPPPPPLLGT(0.336)VS(0.337)S(0.337)PS(0.347)S(0.324)S(0.266)PT(0.061)HLWT(0.001)GEVS(0.001)AAPPPAR 65.722 0.0043139 63438000.0 10974.0 14579.0 11769.0 15383.0 12633.0 12910.0 12131.0 13322.0 16253.0 18442.0 True False 10914.917203326026 15064.253201808391 13425.97290201819 17330.486222745472 14241.737668342605 12017.562086871132 11544.177185079727 14316.155287745301 12247.665929042065 17265.015771009443 0.63219850755386 0.8725305207715789 0.7776403497158929 1.0037920875720232 0.8248899310162591 0.6960643561675991 0.668645620611835 0.8292002438702823 0.7093921078026316 1.0 14.075564031594599 2.964897674049179 23.805766864062107 0.765341492242703 0.8335835717215143 0.016788414895122172 0.12271743726203302 995.9215421999887 675415.9871802857 0.035976330887790536 0.038179526021432805 922.3540818235494 -2.964897674049179 0.06824207947881133 GS(ph)PPVPSGPPMEEDGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSPPVPSGPPMEEDGLR 17 0 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 1 GS(1)PPVPSGPPMEEDGLR;GS(1)PPVPSGPPMEEDGLR 231.41 4.9871e-16 885900000.0 171579.0 179572.0 178243.0 169448.0 155617.0 166665.0 186287.0 138349.0 196721.0 182740.0 True False 170655.2377282188 185548.9454664335 203338.0650840707 190900.0994261053 175433.90253577716 155143.8408372098 177275.58612455265 148673.30490198708 148241.745476348 171077.3767484149 0.9975324673067854 1.0845907798744212 1.1885736673592915 1.1158699242088657 1.0254652360830205 0.9068635712445086 1.0362304443401231 0.8690412942245713 0.866518696357796 1.0 17.38428946506 2.9692658409410555 3.1833309726671524 0.9313978409964695 1.1017040656617283 0.5675622963035589 0.06606445615751495 0.1816579294151827 3.7468683282864346 0.0214288135968788 0.024259772001260702 931.6780009881331 -2.9692658409410555 0.1703062246652588 GS(ph)PQQIDHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPQQIDHAK 10 0 A0A087WTP3;Q92945;M0R3J3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 GS(1)PQQIDHAK 143.05 0.0027026 0.0 966310.0 1022900.0 837770.0 894890.0 882410.0 1003200.0 937050.0 909640.0 1066500.0 903340.0 True False 961107.4943271349 1056946.608143892 955720.7339726207 1008182.9822448601 994779.6830461649 933851.1452787853 891721.3116213803 977521.9558583273 803675.3653678314 845688.0678117168 1.1364799042442149 1.2498066939490147 1.130110226629568 1.192145213605309 1.1762962265983417 1.104250113987297 1.0544328879190386 1.155889497634442 0.9503212779712069 1.0 19.689766097585274 1.7657080587331446 0.5878680542229455 0.9875433692368899 1.1875506703903327 0.6083243139715011 0.0539716222525635 0.5171462383410267 0.38419278624771114 0.0499118943303314 0.029114300154191454 58.3053032827645 -1.7657080587331446 0.20000730115344278 GS(ph)PRPQAPK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSPRPQAPK 9 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 GS(1)PRPQAPK;GS(1)PRPQAPK;GS(1)PRPQAPK 87.184 0.035863 2176750000.0 1973800.0 2136620.0 1819620.0 1835170.0 1861010.0 2092730.0 2227660.0 1980350.0 2786060.0 2194410.0 True False 1963173.2801097946 2207736.105085936 2075806.6795794324 2067502.3338357816 2097998.5924295345 1948064.50085653 2119899.5753124002 2128133.7730135415 2099472.8442913285 2054360.8750710804 0.9556126695811753 1.0746583679021577 1.010439161283 1.0063968599305837 1.02124150527202 0.948258178246861 1.0319022334569394 1.0359103888891519 1.0219591259586693 1.0 20.970258201294214 GS(ph)PRYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 GSPRYSPR 8 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 GS(1)PRY(0.044)S(0.956)PR;GS(1)PRY(0.029)S(0.971)PR;GS(1)PRY(0.014)S(0.987)PR;GS(1)PRY(0.022)S(0.978)PR;GS(1)PRY(0.101)S(0.899)PR 100.72 0.0033586 4771910000.0 2751230.0 3562220.0 3260500.0 3740550.0 3517440.0 2978880.0 3662140.0 2897140.0 4195880.0 3761890.0 True False 2736417.683370388 3680786.339292541 3719550.059225954 4214103.246472773 3965365.134499722 2772957.037129258 3484988.2974666446 3113339.2981788297 3161861.59591146 3521802.9594839355 0.7769934078797431 1.0451426106564186 1.0561493933695243 1.1965755310428507 1.125947470690065 0.787368591891805 0.9895466434548383 0.8840185933159191 0.8977962799982373 1.0 21.747882763749544 2.7504187982690853 24.992771497999765 0.9094753724967035 1.0500162631813832 0.23553285563212245 0.11495593211049286 1068.5391266492766 2252094.197129857 0.03574854712913807 0.037639685526035346 562.8838629662704 -2.7504187982690853 0.14054089068467968 GS(ph)PRYS(ph)PRHS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPRYSPRHSR 11 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 GS(1)PRY(0.055)S(0.952)PRHS(0.993)R 57.499 0.074137 164490000.0 95443.0 180160.0 127730.0 247310.0 208440.0 179140.0 201060.0 148450.0 249570.0 195440.0 True False 94929.14549271407 186156.51669098035 145713.27375093725 278619.42064273456 234983.59847932664 166756.4734502012 191333.95967621222 159528.09281382585 188066.81756666614 182966.85187539796 0.5188324798710624 1.0174330201503088 0.7963916537743639 1.522786328708748 1.2842960135716417 0.9114026488457256 1.0457301839926303 0.8718961450048115 1.0278737139486955 1.0 17.481222773401143 4.9937872346596786 1.6416227145348716 1.0629586788457885 8.631863504779262e-13 0.3964833828300116 0.1987524563608156 2.320804213903349 3.566427264783567 0.055099098377021385 4.7696889057935605 98579.64154917844 -4.9937872346596786 -1.0629586788449255 GS(ph)PS(ph)HSKSPAYTPQNLDSESESGSSIAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSHSKSPAYTPQNLDSESESGSSIAEK 29 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 GS(0.526)PS(0.44)HS(0.378)KS(0.33)PAY(0.321)T(0.004)PQNLDSESESGSSIAEK 132.82 1.3825e-05 396460000.0 135920.0 106940.0 91845.0 98093.0 87545.0 152970.0 146950.0 122560.0 195920.0 161930.0 True False 135188.22182213154 110499.43325340479 104775.97766894885 110511.56374229815 98693.33683013162 142395.54395264745 139841.46709648537 131706.0495470697 147638.1411934977 151595.48876475202 0.8917694248271365 0.7289097726706059 0.6911549843778113 0.7289897914692668 0.6510308297055284 0.9393125422987938 0.9224645682794248 0.8687992671830292 0.973895347391271 1.0 17.20986729632604 2.725030029381157 24.785044330351965 0.9260616907589905 0.734701053844547 0.6932457601072193 0.06697465753608656 420.99998266271064 771177.5839595667 0.021682580723092506 0.020545254341091695 530.9211536140547 -2.725030029381157 -0.1913606369144435 GS(ph)PS(ph)PEKPDVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSPSPEKPDVEK 12 1 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 2 GS(1)PS(1)PEKPDVEK;GS(1)PS(1)PEKPDVEK 123.36 0.00019466 937150000.0 1719490.0 1010460.0 957950.0 851840.0 954620.0 1449380.0 1308650.0 1445090.0 2071880.0 1342400.0 True False 1710232.4568932978 1044092.5502640302 1092821.033349335 959682.8566588773 1076185.1985239617 1349187.772073531 1245345.599971527 1552929.9538183333 1561292.935769622 1256726.8827135381 1.3608624757039856 0.8308030683720352 0.8695771916565548 0.7636367693406222 0.8563397611104261 1.073572779123138 0.9909437102853752 1.2356940678035233 1.2423486417338838 1.0 20.26123972046107 2.132526059447695 1.7949517636291652 1.1752075195935774 0.9250051013974506 0.19958521530791185 0.17142403084484775 0.47231240496535276 2.948504769824772 0.09464195064042687 0.05377025314928264 135.68319433311842 -2.132526059447695 -0.25020241819612676 GS(ph)PSESEKER ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSESEKER 10 1 Q9NYD6;D6RAG4;V9GYH0 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 GS(0.986)PS(0.014)ESEKER 96.745 0.0039554 126720000.0 151170.0 167510.0 145150.0 136740.0 142650.0 170700.0 160650.0 139280.0 201760.0 155700.0 True False 150356.11751656607 173085.46908806666 165585.85833358308 154051.269979732 160815.63194720744 158899.9107845781 152878.74575740332 149673.7808495095 152038.9514454887 145763.09269852345 1.031510204215701 1.1874437203802548 1.1359930368386073 1.0568606025556186 1.103267150621019 1.0901244467502145 1.0488165620469985 1.0268290695441977 1.043055197517971 1.0 17.153265949100284 2.150526370206012 0.6575735776946493 1.0066625562370883 1.1178372968097097 0.44292046708174426 0.04032876634907895 0.6377903491964079 0.5378930244513811 0.03463539563220461 0.022313366274314638 141.4250595254751 -2.150526370206012 0.11117474057262133 GS(ph)PSFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSPSFLK 7 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 GS(0.976)PS(0.024)FLK;GS(0.998)PS(0.002)FLK 116.37 0.005738399999999999 518570000.0 719320.0 704070.0 646390.0 528880.0 574400.0 809920.0 805930.0 755470.0 1054620.0 843510.0 True False 715447.2610439647 727504.5443306981 737396.0934774016 595836.1537727123 647546.435264465 753932.1367466059 766944.0869484213 811847.0075989292 794723.0321839869 789676.4696347559 0.9060004806460499 0.9212691175503637 0.9337951956685057 0.7545319845332364 0.8200148543921673 0.9547354717246639 0.9712130428593766 1.0280754699129224 1.0063906710447699 1.0 19.590902176770438 2.453625192719319 2.848221887486455 1.0060415591460303 0.8682204714262957 0.6066002453674384 0.051038370332559396 0.19735400853704568 3.2805101389827755 0.021013912913040764 0.01768463338702182 284.20073235227045 -2.453625192719319 -0.13782108771973467 GS(ph)PSGGSTAEASDTLSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSGGSTAEASDTLSIR 18 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 GS(0.872)PS(0.128)GGSTAEASDTLSIR 240.34 6.270800000000001e-24 504090000.0 84352.0 99250.0 106430.0 102960.0 95631.0 115480.0 111360.0 96588.0 98063.0 100080.0 True False 83897.8582043882 102553.47625210813 121414.41889385639 115994.72544327342 107809.04100065489 107497.13941067999 105973.09136348857 103795.88702392604 73896.6876268783 93692.80871720126 0.8954567522639036 1.0945714794574208 1.2958776725365226 1.2380323210651887 1.150665056120385 1.147336075014521 1.1310696393290294 1.1078319504458396 0.7887124811246207 1.0 16.515650699299705 1.352163245038164 5.987580995878359 0.8972402148072627 1.14250462115561 0.43288298275080017 0.10906787663750996 0.18400908647641245 8.424005706263195 0.07704086544414517 0.027578514325821098 22.49900151960692 -1.352163245038164 0.24526440634834734 GS(ph)PSHSKS(ph)PAYTPQNLDSESESGSSIAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSPSHSKSPAYTPQNLDSESESGSSIAEK 29 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 GS(0.838)PS(0.32)HS(0.218)KS(0.525)PAY(0.099)T(0.001)PQNLDSESESGSSIAEK;GS(0.871)PS(0.251)HS(0.201)KS(0.595)PAY(0.08)T(0.002)PQNLDSESESGSSIAEK;GS(0.901)PS(0.308)HS(0.215)KS(0.514)PAY(0.062)TPQNLDSESESGSSIAEK 309.43 6.996599999999997e-92 721990000.0 509180.0 414107.0 406305.0 403922.0 390290.0 571970.0 551520.0 564730.0 853470.0 633440.0 True False 506438.6314552168 427890.30116203224 463509.21233363065 455058.48378494475 439991.1180699306 532431.0601725545 524840.8705890006 606873.0202408346 643143.7544120796 593013.3168847311 0.8540088679891441 0.7215526008924431 0.781616869530987 0.7673663825552812 0.741958241985745 0.8978399725820112 0.885040614848483 1.0233716561862598 1.084535095755856 1.0 19.17770497716398 2.0901104132806116 1.2689738569697893 1.0495474403825489 0.7715019531425069 0.8484461546136783 0.04674079514106008 0.1506367782303128 0.455277135948818 0.030738279782612298 0.01542353944429442 123.058158915477 -2.0901104132806116 -0.27804548724004197 GS(ph)PSPASVSSGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSPSPASVSSGR 12 0 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 GS(0.742)PS(0.258)PASVSSGR;GS(0.999)PS(0.001)PASVSSGR;GS(0.996)PS(0.004)PASVSSGR;GS(0.999)PS(0.001)PASVSSGR 260.83 2.5879999999999998e-21 2769900000.0 949520.0 1158610.0 1119090.0 1077770.0 1089660.0 1041700.0 991760.0 946880.0 1107950.0 1210370.0 True False 944407.8898215892 1197173.633455464 1276648.1446953458 1214215.5714937516 1228421.7420791744 969689.7308980371 943784.7799088842 1017540.993759216 834910.5682693756 1133123.15035011 0.83345564824952 1.0565256151421527 1.1266631912876282 1.0715654085070858 1.0841025899961707 0.8557672929005329 0.8329057434024498 0.8979968271275884 0.7368224433605534 1.0 20.11187323431697 2.7311937687029264 24.637772543755307 0.8591570776857081 1.0428717552041682 0.44123889209788114 0.09518271435932994 407.47754577345717 1362769.7359496772 0.029933359990168627 0.028754192683487802 538.5099953512744 -2.7311937687029264 0.18371467751846005 GS(ph)PSSHLLGADHGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSPSSHLLGADHGLR 15 0 F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 F8VU11 PRPF40B Pre-mRNA-processing factor 40 homolog B 1 GS(0.798)PS(0.141)S(0.062)HLLGADHGLR;GS(0.533)PS(0.333)S(0.134)HLLGADHGLR 178.02 4.6959e-07 2949000000.0 1216230.0 1748430.0 1829390.0 1933520.0 1682060.0 1751030.0 1724790.0 1058830.0 1669380.0 1741350.0 True False 1209681.9528158556 1806625.4356017462 2086952.2106570713 2178303.433751727 1896260.37064928 1629985.417581253 1641355.3183623494 1137845.271229796 1257983.667545945 1630215.5521552605 0.742038039826433 1.108212612260544 1.2801694891807238 1.336205774059667 1.16319609890992 0.9998588318129444 1.0068333087562324 0.6979722833127705 0.7716670754875338 1.0 20.63663130400472 2.1417491836081815 2.006649602427043 0.798875021973779 1.137491996312045 0.3440376269412585 0.169636719266454 0.3303342556069957 2.6088119581273417 0.09164639445667645 0.054541823847899386 138.59551724296 -2.1417491836081815 0.3386169743382659 GS(ph)PTPGFSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSPTPGFSTR 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(0.999)PT(0.001)PGFSTR;GS(0.998)PT(0.002)PGFSTR 131.02 0.0028064 0.0 763730.0 895820.0 724560.0 780500.0 792010.0 797750.0 828050.0 785050.0 905030.0 838090.0 True False 759618.1625383798 925636.827165375 826571.7500115815 879311.219973533 892867.7788889434 742603.4202015063 787994.0580418148 843634.4174031266 681997.4832806825 784602.3786750515 0.9681568437520388 1.1797527669091274 1.053491261914606 1.1207093476550698 1.1379876013079624 0.9464710283641145 1.0043228002602933 1.0752381592670694 0.8692268871684576 1.0 19.581602183669688 2.7403317408423544 24.978907772623355 0.9933531233989477 1.0963470469985457 0.3717629348249465 0.07213061118454533 187.13844084527196 2639307.9339146186 0.0218135991137126 0.022063490583456937 549.9608073490192 -2.7403317408423544 0.10299392359959803 GS(ph)PTRPNPPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSPTRPNPPVR 11 1 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 GS(0.605)PT(0.395)RPNPPVR;GS(0.613)PT(0.387)RPNPPVR 91.307 0.006564199999999999 2031840000.0 359610.0 439560.0 404810.0 417640.0 420170.0 454310.0 430350.0 403450.0 471360.0 451400.0 True False 357673.89971642743 454190.4888803687 461803.7293284034 470513.1811784055 473676.1589572951 422904.61903070676 409532.3264033522 433557.4876775887 355199.64390040364 422591.2655370169 0.8463826133791612 1.0747749088074416 1.0927905212180768 1.113400156485702 1.120884877626046 1.0007415048990462 0.9690979435718583 1.0259499498330527 0.8405276513442039 1.0 18.688903423213084 2.5096492356896642 7.681388289200366 0.97020981481109 1.057485821848349 0.19151598996326902 0.0860648459618311 0.4224505037807227 86.45954173861882 0.028435748367642746 0.026228235414133657 323.3324072800576 -2.5096492356896642 0.08727600703725891 GS(ph)PTSAYPER ddPTM_BT-474_Trastuzumab_2h_R1 7 GSPTSAYPER 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(0.983)PT(0.016)S(0.001)AYPER;GS(0.685)PT(0.315)S(0.001)AYPER;GS(0.761)PT(0.224)S(0.015)AYPER;GS(0.938)PT(0.062)SAYPER;GS(1)PTSAYPER;GS(0.986)PT(0.01)S(0.004)AYPER;GS(1)PTSAYPER 230.93 9.6965e-10 14559790000.0 2912290.0 3443910.0 3129530.0 3193090.0 3187680.0 3141790.0 3252380.0 2819170.0 3384930.0 3225290.0 True False 2896610.554225836 3558538.4624624383 3570140.6216376005 3597334.866605107 3593612.1531403745 2924605.452278147 3095049.9541018563 3029550.7808551965 2550759.3572381916 3019449.2308903052 0.9593175220805916 1.1785389289069712 1.1823814042354075 1.1913877636367505 1.1901548522081868 0.968589046756652 1.0250379183190503 1.0033454942250883 0.8447763688631661 1.0 21.52585398499094 2.73131349541227 24.754307128169888 0.9761759406371386 1.1476471960319299 0.5406151496510139 0.07897192214394128 392.0424644234132 1339113.2885264792 0.02538077590212296 0.024380690179022592 538.6584727561831 -2.73131349541227 0.17147125539479124 GS(ph)PTSAYPERK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPTSAYPERK 11 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(0.972)PT(0.024)S(0.004)AYPERK 84.29700000000003 0.009841 304710000.0 103690.0 114690.0 115190.0 127510.0 106710.0 115820.0 119360.0 107390.0 170080.0 135270.0 True False 103131.74456104208 118507.38731843092 131407.75075057146 143652.75292610517 120298.88598027691 107813.6360109538 113586.10080052055 115403.98711537069 128166.06295523727 126636.95278952653 0.8143890253933176 0.9358041606970192 1.0376730318912055 1.1343667844318654 0.9499508897708268 0.8513599990844891 0.896942782485482 0.9112978840163243 1.012074754896007 1.0 16.950338920492563 3.005821944107655 24.99968538740611 0.9219997904676146 0.9890308526490976 0.0462498712688032 0.08760784195113604 371.4519322875485 1595011.302820274 0.02671877263403997 0.03184846520920385 1013.4957785832665 -3.005821944107655 0.06703106218148303 GS(ph)PTTGFIEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSPTTGFIEQK 11 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(0.998)PT(0.002)TGFIEQK;GS(0.96)PT(0.04)TGFIEQK;GS(0.795)PT(0.204)T(0.001)GFIEQK;GS(0.893)PT(0.107)TGFIEQK 234.71 1.7486e-15 1001160000.0 1385990.0 1264710.0 1151640.0 1133860.0 1233680.0 1415390.0 1348050.0 1333640.0 1688690.0 1422540.0 True False 1378527.983837966 1306805.107816662 1313780.9017656753 1277406.559742715 1390781.8354057542 1317547.4207696777 1282839.6714489106 1433162.9888867026 1272534.976786687 1331752.2793022317 1.035123427429193 0.9812674084562928 0.986505465156048 0.9591923209712913 1.0443247269187712 0.9893337081127456 0.9632719923866406 1.0761483281542457 0.9555342961030474 1.0 20.3448943194068 GS(ph)PVFLPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSPVFLPR 8 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 GS(1)PVFLPR;GS(1)PVFLPR;GS(1)PVFLPR;GS(1)PVFLPR;GS(1)PVFLPR;GS(1)PVFLPR 138.26 0.00074789 5132800000.0 2298700.0 2929550.0 2599190.0 2581280.0 2492460.0 2618520.0 2509290.0 2311320.0 2985010.0 2429570.0 True False 2286324.054609577 3027058.3007996287 2965133.359435521 2908069.783335399 2809860.0070321565 2437507.87573306 2387906.056281324 2483802.4350451445 2249394.282584743 2274512.762540474 1.0051928888963062 1.3308601079989602 1.3036345226410915 1.2785462588863583 1.2353678789182683 1.071661551377945 1.0498538832616606 1.0920151673587042 0.9889565447293093 1.0 21.117126099096495 2.7141833975175715 3.971746255763418 1.0479423927362532 1.2444673388704581 0.5380208131041286 0.08783200734942638 0.17305371565728353 6.242643909163099 0.028320748496817916 0.027735471262379637 517.8254574645714 -2.7141833975175715 0.1965249461342049 GS(ph)PVPPVPER ddPTM_BT-474_Trastuzumab_2h_R1 4 GSPVPPVPER 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(1)PVPPVPER;GS(1)PVPPVPER;GS(1)PVPPVPER;GS(1)PVPPVPER 108.37 0.0022657 2002400000.0 872320.0 990710.0 923060.0 980510.0 949280.0 962240.0 925770.0 915390.0 989430.0 946420.0 True False 867623.5260438622 1023685.1834531594 1053018.8246186504 1104642.4654660444 1070165.1811766222 895722.613669317 880986.9683151642 983701.0500562357 745598.2341827403 886018.665329073 0.9792384291606558 1.155376543983931 1.1884837936541128 1.2467485265175233 1.2078359328684751 1.0109523068982298 0.9943210033706908 1.1102486759586299 0.8415152675207135 1.0 19.756977566099774 2.726456031073644 23.365955679728838 1.0076785804474009 1.162425471244176 0.445629160902853 0.09046418164147625 321.49255223453804 620587.5677083235 0.02970069622122202 0.028230169326185325 532.6672931873167 -2.726456031073644 0.15474689079677506 GS(ph)QHSPTRPPVAAAAASLGSLPGPGAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSQHSPTRPPVAAAAASLGSLPGPGAAR 28 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 GS(0.329)QHS(0.329)PT(0.329)RPPVAAAAAS(0.013)LGSLPGPGAAR 80.847 0.0033529 163800000.0 94001.0 125320.0 138240.0 152300.0 129390.0 180970.0 168520.0 142310.0 157710.0 153820.0 True False 93494.90906049286 129491.20044246018 157702.99039637987 171581.16438432905 145867.0495453851 168459.9698575578 160368.04379108344 152929.89483553768 118844.48370572955 144003.07590807258 0.6492563333867766 0.8992252396408784 1.0951362629021404 1.1915104125543925 1.0129439848805897 1.1698359135404703 1.1136431828265791 1.0619904739615682 0.8252912860111158 1.0 17.135740102423348 4.587569272451719 2.506324376117132 1.069986194459455 0.6210622932916645 0.6205144519869281 0.09840216415319442 0.2332020410550281 2.267556155096601 0.024527772170552516 0.1914675848710485 38687.375828718665 -4.587569272451719 -0.4489239011677906 GS(ph)SGEGLPFAEEGNLTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSGEGLPFAEEGNLTIK 18 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 GS(0.713)S(0.287)GEGLPFAEEGNLTIK 262.74 7.797399999999997e-31 105060000.0 142320.0 165750.0 144260.0 148280.0 144150.0 169950.0 168950.0 164350.0 188870.0 172830.0 True False 141553.7649332386 171266.88855200892 164570.55406960187 167052.23279650914 162506.64805601098 158201.75651926815 160777.243048324 176614.63155238988 142325.51922833768 161799.84143279257 0.8748696147025355 1.0585108553592044 1.017124322324878 1.0324622775721215 1.004368401210776 0.9777621233638911 0.9936798554596029 1.0915624514116165 0.8796394234258628 1.0 17.30385066833427 4.75101912308513 24.430271617871444 1.0122491806918454 0.8748694960890914 0.3497788712365901 0.05309872892199556 1500.2762764183308 2941864.708800083 0.012047937581514883 0.20726442979456433 56366.24747647841 -4.75101912308513 -0.13737968460275407 GS(ph)SGSPAHAESYSSGGGGQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 GS(0.333)S(0.333)GS(0.333)PAHAESYSSGGGGQQK 68.41 0.012084 0.0 24857.0 29532.0 22837.0 25436.0 24844.0 32450.0 27008.0 26364.0 33824.0 27303.0 True False 24723.172673872334 30514.954767529023 26052.251097237593 28656.19499198818 28007.736138075168 30206.80787908351 25701.519859420765 28331.415553679388 25488.528418379283 25560.49916472566 0.9672413873666104 1.1938325058080508 1.0192387452742147 1.1211124949991071 1.095742925737803 1.1817769161867506 1.0055171338316318 1.1084061923476707 0.9971842980889161 1.0 14.641628390147444 1.2317199538517047 24.898886903747403 0.9985920706701404 1.0894122972466274 0.20531263822169632 0.0690890544844677 228.7882414445293 832712.4281023588 0.05476658594261935 0.014917372431660737 17.04982610372074 -1.2317199538517047 0.09082022657648692 GS(ph)SGSVDETLFALPAASEPVIR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSSGSVDETLFALPAASEPVIR 22 0 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 GS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR;GS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR;GS(0.333)S(0.333)GS(0.333)VDET(0.001)LFALPAASEPVIR 175.33 1.6917e-12 106491000.0 98130.0 114217.0 111562.0 108767.0 102504.0 134619.0 107204.0 98840.0 103820.0 121706.0 True False 97601.67898326789 118018.64379936547 127268.95988571276 122536.89104786816 115557.2768111922 125313.10538904005 102018.13296095029 106215.9426993504 78234.95211672604 113938.61888225126 0.8566163074535191 1.0358089729113766 1.1169958099741195 1.0754640722343904 1.0142064029283497 1.0998299489529852 0.8953780023117528 0.9322207320164045 0.686641218615939 1.0 16.79789729809957 2.156364164344981 6.643726609870827 0.8779638798342876 1.0379048244416351 0.36560155460952803 0.0997675695202324 0.2322467851497953 15.316697943046904 0.036994731548801216 0.027289838477841624 143.33893202372852 -2.156364164344981 0.15994094460734753 GS(ph)SLSGTDDGAQEVVKDILEDVVTSAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSLSGTDDGAQEVVKDILEDVVTSAIK 28 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 GS(0.483)S(0.483)LS(0.027)GT(0.007)DDGAQEVVKDILEDVVTSAIK 99.269 0.00095583 2388100000.0 52524.0 55761.0 46687.0 47300.0 50556.0 69756.0 63873.0 60362.0 91852.0 63516.0 True False 52241.216619965 57616.97117676369 53260.12378932137 53288.17515022173 56994.00693111132 64933.931907961494 60783.21897144482 64866.518952025304 69216.30535374212 59462.35450121659 0.8785595030364322 0.9689655187734764 0.8956948347585475 0.8961665846772257 0.9584889029233652 1.0920175033875081 1.0222134572589319 1.0908837952371722 1.1640357320920747 1.0 15.859688969602555 2.8652655954008863 3.4253086248804236 1.0763639795282538 0.9137605702926742 0.7335375589733013 0.04706050334779513 0.12685601145902684 2.7509347020818717 0.014649857474541651 0.0157166547864889 733.2728334534464 -2.8652655954008863 -0.1626034092355796 GS(ph)SSSSPEHSASSDSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSSSSPEHSASSDSTK 17 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 GS(0.2)S(0.2)S(0.2)S(0.2)S(0.2)PEHSASSDSTK 64.843 0.028668 42004000.0 29835.0 39948.0 34015.0 39127.0 40668.0 42221.0 42553.0 41560.0 52534.0 45803.0 True False 29674.371674980102 41277.64503092404 38804.01633631988 44080.474188218315 45846.82874187898 39302.36164754348 40494.548821754 44661.41823740386 39587.69961953461 42879.81332607882 0.6920359342360434 0.9626358379181569 0.9049483504332304 1.0280006084217086 1.0691937577535036 0.9165702599652039 0.9443732535357343 1.041548802877868 0.923224625967716 1.0 15.388011004698527 5.260011903967611 1.4338686847426034 0.9866653770435779 9.133889824240775e-13 0.71282867947825 0.05405332495922871 2.47094452808855 1.631332298946305 0.014372011690981857 5.056779124537153 181975.073710916 -5.260011903967611 -0.9866653770426645 GS(ph)VHS(ph)LDAGLLLPSGDPFSK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSVHSLDAGLLLPSGDPFSK 20 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 2 GS(1)VHS(1)LDAGLLLPSGDPFSK;GS(1)VHS(1)LDAGLLLPSGDPFSK;GS(1)VHS(1)LDAGLLLPSGDPFSK;GS(1)VHS(1)LDAGLLLPSGDPFSK 141.36 1.0135e-07 816745000.0 2389860.0 1965990.0 1775600.0 1670580.0 1716630.0 2128540.0 1902680.0 1918450.0 2527470.0 2079570.0 True False 2376993.259298409 2031426.788683946 2025589.0462081318 1882075.2567115754 1935232.6552368386 1981399.0398442068 1810640.099456555 2061614.48069171 1904608.8848628507 1946850.0621905504 1.2209431560558246 1.0434428557884072 1.0404442979697093 0.96672840567594 0.9940327161401222 1.0177460906335964 0.9300357200694053 1.0589487710070642 0.9783028091643735 1.0 20.892710347648578 5.18755956314838 1.2941002108352366 0.9968974517254934 1.6151393914874055 0.7985904563640268 0.03369066882884504 1.5750723157413553 1.0430276947930845 0.008914015145402758 1.708308503570902 154013.77402612273 -5.18755956314838 0.6182419397619121 GS(ph)VHSLDAGLLLPSGDPFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSVHSLDAGLLLPSGDPFSK 20 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 GS(0.946)VHS(0.054)LDAGLLLPSGDPFSK;GS(0.5)VHS(0.5)LDAGLLLPSGDPFSK;GS(0.5)VHS(0.5)LDAGLLLPSGDPFSK 177.91 4.1099e-17 627622000.0 988874.0 1181509.0 1079017.0 1187076.0 1012350.0 1243036.0 1246862.0 1172967.0 1457363.0 1354437.0 True False 983550.012258229 1220834.812827726 1230933.2146161052 1337359.6998863549 1141266.7718314442 1157107.847112002 1186546.521584607 1260499.7537457377 1098215.4163136971 1267995.6710681438 0.7756730048058434 0.9628067671550564 0.9707708336095362 1.0547036795163343 0.9000557319490337 0.9125487361776786 0.9357654356856557 0.9940883730966592 0.8661034429152066 1.0 20.274118389455136 4.739821149761282 24.440155771303054 0.9563963875004773 0.7756729279838394 0.5186599444691808 0.05187421423225625 62.67471888769165 1214991.892410799 0.012158561497342691 0.07573804202708398 54931.46096855473 -4.739821149761282 -0.18072345951663793 GS(ph)YGDLGGPIITTQVTIPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSYGDLGGPIITTQVTIPK 19 0 P61978;P61978-2;S4R359;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK;GS(0.546)Y(0.454)GDLGGPIITTQVTIPK 318.51 8.584599999999995e-62 1566565000.0 757670.0 637150.0 584927.0 607810.0 598600.0 762630.0 694780.0 687520.0 935060.0 817410.0 True False 753590.788905051 658357.1525846908 667279.6373233742 684758.6836798372 674828.1618198275 709911.1831379195 661170.8370826547 738826.2335558202 704626.9921620664 765242.193980091 0.9847742255109587 0.860325211761414 0.8719848991242823 0.8948260943615091 0.88184912845695 0.9276947726125894 0.864002066644872 0.965480261501422 0.9207895195862636 1.0 19.545556897738702 1.049428907429257 0.8010187177029995 0.9975560134261632 0.8951218092627045 0.36304195476191514 0.0388825870067626 0.6272571610516322 0.9086813876252897 0.03483614729152712 0.012921926238619017 11.205439817775723 -1.049428907429257 -0.10243420416345872 GSAADSEESPAIEAIHLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSAADSEESPAIEAIHLLR 19 0 P13716;P13716-2;B7ZBK6 P13716 ALAD Delta-aminolevulinic acid dehydratase 0 ;; 202.5 5.4979e-16 200626000.0 185035.0 217523.0 205265.0 222656.0 197003.0 216148.0 199500.0 166825.0 240821.0 209999.0 False True 184038.79211932115 224763.12155956987 234164.52780463602 250844.22677056573 222090.16432173664 201206.19751766248 189849.422835991 179274.32862018535 181473.89138607253 196596.68403081095 0.9361235822801481 1.1432701556875935 1.1910909329881545 1.275933152215594 1.1296740095928084 1.02344654748159 0.9656796795526698 0.9118888729175574 0.9230770716236071 1.0 17.58487946258199 2.526459150912407 2.352419911039967 0.9392343478806089 1.147092921185238 0.5266287291343161 0.08269604999474305 0.22979025113677848 2.5445793971569417 0.03297483449868755 0.02856245785323754 336.0927551798354 -2.526459150912407 0.2078585733046292 GSAFSTS(ph)ISK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSAFSTSISK 10 0 K7ER00;Q9Y285;K7EPH2;K7ER16 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 1 GSAFS(0.012)T(0.036)S(0.952)ISK;GSAFS(0.029)T(0.15)S(0.821)ISK 147.96 2.7232e-05 1186000000.0 2781100.0 2507000.0 1960640.0 2057100.0 1621390.0 2184700.0 2309900.0 2127290.0 2731200.0 2621500.0 True False 2766126.8666092567 2590443.9794864967 2236681.0698116184 2317528.6490807836 1827864.4057685435 2033676.8312306264 2198161.31232509 2286039.181959743 2058132.3562049887 2454193.6256209346 1.1271021315237097 1.0555173611581234 0.9113710696912581 0.9443136942768428 0.7447922554627596 0.8286537826517607 0.8956755854049349 0.9314828129672749 0.838618573008583 1.0 21.226817645424966 4.330453683411474 1.7232575729730775 0.876407178375723 1.1420342386199955 0.6132753545786225 0.06642953233569782 0.3036867124178854 1.510854972617348 0.018189302220035695 0.10326061059708747 21401.966671493305 -4.330453683411474 0.2656270602442725 GSAMQVS(ph)PLMFTDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSAMQVSPLMFTDK 14 0 A0A494C1L5;P50851-2;P50851;E9PEM5;H0YAC6 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 GSAMQVS(1)PLMFTDK 255.72 2.8557e-24 107380000.0 255390.0 248300.0 220920.0 203120.0 201700.0 193680.0 206470.0 175120.0 235080.0 177340.0 True False 254015.00861649652 256564.51539948006 252023.61572893657 228834.9711736374 227385.29943043643 180291.35747367924 196482.25730800518 188188.34364134175 177147.6839106141 166022.00937158728 1.5300080367535185 1.5453644752922022 1.5180132844005167 1.37834117319628 1.3696093686079116 1.0859485327042067 1.183471143685789 1.1335144319337938 1.067013250719822 1.0 17.341014985324854 3.069840605470263 0.8019056860621361 1.072783622145681 1.5681486862396257 0.9291428307105545 0.053201799659005844 0.1554883701161262 0.22260304478011986 0.02977121312087737 0.04201546428949875 1174.4664237854731 -3.069840605470263 0.49536506409394465 GSASYS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSASYSPPR 9 0 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 GSAS(0.003)YS(0.997)PPR;GSASYS(1)PPR 123.96 0.0015083 707540000.0 830610.0 954840.0 1048390.0 1081920.0 927520.0 999250.0 1019350.0 887470.0 1076390.0 974070.0 True False 826138.0880494459 986621.2721870301 1195994.1992307636 1218890.9610682428 1045634.174158247 930174.199481485 970040.1462048476 953697.5178813488 811128.1073870423 911904.0186567161 0.9059485111891402 1.0819354361880942 1.3115351777838722 1.3366439188016026 1.146649376212337 1.0200352015683425 1.0637524633719337 1.045831028671413 0.8894884667597779 1.0 19.798522457713826 2.7659742856488267 4.587637362385796 1.0140213503770987 1.1726446973700277 0.2822346121605336 0.12039215001142677 0.29456778845395976 15.801176497650534 0.04125161390228045 0.04239558824377574 583.4105598142174 -2.7659742856488267 0.15862334699292902 GSAVHQLSEELR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSAVHQLSEELR 12 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ;; 147.18 5.8851e-05 2465800000.0 3697160.0 4520480.0 4352920.0 4204260.0 3984560.0 4693170.0 4627360.0 3940310.0 5119100.0 4755240.0 False True 3677254.901353094 4670941.444112139 4965773.299741096 4736518.884927511 4491970.097662569 4368742.204433845 4403516.918568171 4234355.940688757 3857566.3974256613 4451756.512034217 0.8260233665998016 1.049235606548878 1.1154638144106406 1.063966295578725 1.0090331952162355 0.9813524600063002 0.9891639191551375 0.9511652151779255 0.8665268163246777 1.0 22.08594325623425 2.0454102666814635 1.4345869466066195 0.9325946658725736 1.020925518944223 0.12899466073140142 0.07733807490995667 0.7534247883152999 2.905173038101694 0.052372834289494526 0.025825037302526305 111.02231188853075 -2.0454102666814635 0.08833085307164945 GSCDS(ph)PSLLSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSCDSPSLLSEK 12 0 P16471-2;P16471 P16471-2 PRLR Prolactin receptor 1 GSCDS(0.984)PS(0.016)LLSEK;GSCDS(0.993)PS(0.007)LLSEK 221.96 2.7222e-11 201230000.0 507920.0 602770.0 526890.0 531460.0 578070.0 635260.0 667140.0 573880.0 711360.0 558650.0 True False 505185.4151552174 622832.8350678406 601071.5321900215 598742.781508178 651683.788010671 591345.9714411894 634867.8894777088 616705.8397035933 536054.8597356407 522996.4787156719 0.9659441998458702 1.1908929800011998 1.149284090145462 1.144831381998053 1.2460576973883608 1.130688246493292 1.2139047112454002 1.1791778048258459 1.0249683918561676 1.0 18.9964417074166 1.200429921597247 6.622410704526864 1.008431784602952 1.1598273111726096 0.3796631653318897 0.07122569298608623 0.19049706960885676 22.28381347023692 0.06213774747772785 0.016291026032664482 15.864629042857192 -1.200429921597247 0.1513955265696576 GSCFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSCFHR 6 0 P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37 P62937 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D 0 ; 102.81 0.08195 926530000.0 260950.0 436320.0 420410.0 428240.0 391100.0 388790.0 407920.0 347190.0 403270.0 397320.0 False True 259545.07419427077 450842.6474389907 479600.0737307728 482455.1400915641 440904.26676868455 361913.8624132163 388187.3511942724 373099.0807950979 303889.5120411486 371962.6974372341 0.6977717819084991 1.2120641412303637 1.289376803198664 1.2970524824548428 1.1853453849174858 0.9729842936045665 1.0436190345667016 1.0030551003250954 0.816989214603778 1.0 18.50479842125204 2.7336843249081983 23.260095065564713 0.9768338259128542 1.157962515068207 0.19493890840533223 0.16832042954013207 254.06948904899468 1211914.886102454 0.05452099699354187 0.05300168849068394 541.6070700313685 -2.7336843249081983 0.18112868915535274 GSCLESGGHSNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSCLESGGHSNDR 13 0 A0A096LP25;Q6ZSR9 A0A096LP25 AAK1 Uncharacterized protein FLJ45252 0 114.7 0.00033513 0.0 47089.0 72865.0 67144.0 70659.0 71544.0 57965.0 59903.0 64750.0 61867.0 64278.0 False True 46835.478056079744 75290.2674771773 76597.29157388976 79604.42215516952 80654.70432548899 53958.01598493306 57005.26303831761 69581.97379383797 46620.70682532734 60175.72300883557 0.7783118459449655 1.2511734585411207 1.2728935813973188 1.322866069153523 1.3403196553807337 0.896674161721504 0.9473133049011734 1.1563130497596394 0.7747427782210784 1.0 15.876893950274901 2.730945272783901 24.981464636184818 0.9798268018753733 1.2079792755533898 0.3122279891251062 0.17406664938775812 771.9861361973047 2532427.0925683705 0.05659205739075295 0.05430051141588597 538.2019572227351 -2.730945272783901 0.2281524736780165 GSCSTEVEKETQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSCSTEVEKETQEK 14 1 O75348 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 0 124.09 9.0349e-05 583250000.0 398690.0 333560.0 320690.0 313630.0 319780.0 421580.0 437780.0 416800.0 677610.0 464910.0 False True 396543.4973386236 344662.342958722 365840.364512551 353335.5258427916 360502.08751544403 392437.1668925742 416602.90891799534 447903.7324675158 510622.09500880976 435239.0457705235 0.9110935730423833 0.7918920563492886 0.8405504241120811 0.8118194570922874 0.828285263049483 0.9016589175675286 0.9571818359735264 1.0290982319257949 1.1731991878275356 1.0 18.731448462579895 2.019367857517469 1.4169569348885784 1.084358395734843 0.8339818057435442 0.7943905398116937 0.051069796474665426 0.16624228499043364 0.6228676461168344 0.033072303026871114 0.015915342368040142 104.56054963939116 -2.019367857517469 -0.25037658999129886 GSDALSETSS(ph)VSHIEDLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 GSDALSET(0.001)S(0.023)S(0.977)VSHIEDLEK;GSDALSETS(0.014)S(0.986)VSHIEDLEK 279.15 9.1042e-40 219064000.0 561350.0 353200.0 337250.0 322700.0 304060.0 489220.0 422130.0 389850.0 742150.0 468360.0 True False 558327.7539718479 364956.04848609085 384731.86857045075 363553.7869128233 342780.2386951834 455401.3729000073 401709.9592068009 418942.5866181881 559257.0768005027 438468.86381683015 1.2733578140797899 0.8323419941593636 0.8774439882033951 0.8291439071593861 0.781766430827753 1.0386173579938636 0.916165302388757 0.9554671293449035 1.2754772868755664 1.0 18.742114873293993 1.377921597898861 7.4403808887347065 1.1363540362656306 0.9251691636696746 0.2291778035596741 0.1459145306313171 0.2974917140652945 18.96382250510529 0.0939964616479391 0.034343114459305615 23.87380256196755 -1.377921597898861 -0.21118487259595597 GSDALSETSSVSHIEDLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ;; 298.23 8.7196e-50 967720000.0 894248.0 995342.0 948938.0 971134.0 947032.0 1189335.0 1168375.0 1024937.0 1465670.0 1244302.0 False True 889433.4681282921 1028471.3567730545 1082540.2220830426 1094079.4648273888 1067630.911701563 1107119.0708434444 1111856.2376240655 1101423.003464631 1104475.2674717957 1164889.5810594629 0.7635345723663831 0.8828917122236285 0.9293071546733864 0.9392130229479153 0.9165082502760103 0.9504068787674482 0.9544735017827495 0.945517087089826 0.9481373045394392 1.0 20.1517617787894 5.699845582074953 0.8727533770899257 0.9504489823643595 9.782322075203772e-16 0.9024519277274277 0.01878959660094033 2.7081610291564164 0.4572103671407195 0.005665072182015254 3.656810298683092 501009.0629649367 -5.699845582074953 -0.9504489823643585 GSDEPPVFLEIHYK ddPTM_BT-474_Trastuzumab_2h_R1 5 GSDEPPVFLEIHYK 14 0 P28838-2;P28838;H0Y9Q1 P28838-2 LAP3 Cytosol aminopeptidase 0 ;;;; 222.79 3.7632e-12 1424470000.0 1835528.0 1993704.0 1934421.0 1784201.0 1830654.0 2169869.0 2076552.0 1829997.0 2472109.0 2091703.0 False True 1825645.7211943315 2060063.232420483 2206770.6625112505 2010080.663661752 2063776.9357636424 2019871.063352208 1976101.2465610132 1966560.6686764788 1862890.8615134603 1958208.7237429665 0.9323039464887835 1.0520141226226534 1.126933322150244 1.02648948464474 1.0539106024504326 1.0314891558093862 1.0091371887996936 1.004265094334555 0.9513239517964595 1.0 20.90110311805537 1.9087315659654926 1.4421353165244633 0.9791318181819504 1.0431653003411756 0.2049058546626371 0.0462828973804149 0.6187511633424826 2.397535007388118 0.033742276105763885 0.01491106588772951 81.04599640214106 -1.9087315659654926 0.06403348215922522 GSDFDCELR ddPTM_BT-474_Trastuzumab_2h_R1 8 GSDFDCELR 9 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;; 210.26 1.6468e-05 42073540000.0 11838700.0 15405730.0 13719530.0 14979510.0 13245530.0 13504000.0 13959740.0 12051750.0 15530160.0 13390150.0 False True 11774961.754603233 15918500.410089545 15651120.57170748 16875914.430116218 14932269.73309286 12570500.26499672 13284454.044814512 12951112.782546476 11702960.161482297 12535579.163115831 0.9393233133774459 1.2698655724601446 1.2485358967504818 1.3462413032954401 1.1911910521875966 1.0027857589526967 1.0597399507397425 1.0331483383434963 0.9335795346350332 1.0 23.579525316662032 2.7728905341516157 5.449616529004431 1.0141170543511535 1.215363775347313 0.4621009167644058 0.10342508501672086 0.1746074688870707 14.703885113807527 0.03227208223521795 0.03356083125894499 592.7758939579924 -2.7728905341516157 0.20124672099615948 GSDHSASLEPGELAELVR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSDHSASLEPGELAELVR 18 0 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 NANS Sialic acid synthase 0 ;;;;; 251.35 1.3443e-25 7241370000.0 2941240.0 5158140.0 5257480.0 6019830.0 5890250.0 5081180.0 5373880.0 4868650.0 4605800.0 4963980.0 False True 2925404.6906424826 5329825.571738525 5997687.485164626 6781939.8607729245 6640338.423252992 4729929.986411144 5113924.894184837 5231973.385503763 3470762.3045580434 4647174.546522903 0.6295017889593412 1.1468959296410317 1.290609471437263 1.4593684383659076 1.4288980017377244 1.0178076891796888 1.1004374470959273 1.1258396544236577 0.7468543025040727 1.0 22.147922402396148 1.3644908603619663 5.398139471421878 0.8766088674571113 1.1696598265377405 0.18792143710067377 0.22780941263690008 0.33308710034163763 13.26567478985472 0.1664672978024258 0.05915410574914046 23.146794735493003 -1.3644908603619663 0.29305095908062917 GSDIDNPTLTVMDIS(ph)PPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSDIDNPTLTVMDISPPSR 19 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 GSDIDNPTLTVMDIS(0.973)PPS(0.027)R;GSDIDNPTLTVMDIS(0.984)PPS(0.016)R 127.17 2.5104e-05 52156000.0 53852.0 57941.0 39352.0 47780.0 56382.0 51447.0 50257.0 46799.0 49464.0 46140.0 True False 53562.06681551968 59869.53115892587 44892.419546284276 53828.94310100624 63561.91349770385 47890.5899832114 47825.87690961598 50291.3790205068 37274.25998364217 43195.30569755859 1.2399974013506523 1.386019387803747 1.0392893121444353 1.2461757645125002 1.4715004899547772 1.108698947948832 1.1072007973384734 1.1642788078091846 0.8629238613247948 1.0 15.398586913816867 1.7005411956503402 1.0885108310718072 0.951554303248315 1.2585397341583424 0.4575053268953555 0.12666350933544054 0.4531378781559081 1.007572975868481 0.1095432274177978 0.04268279053544338 50.18121769211164 -1.7005411956503402 0.3069854309100274 GSDIDNPTLTVMDIS(ph)PPSRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 GSDIDNPTLTVMDIS(0.993)PPS(0.27)RS(0.737)PR;GSDIDNPTLTVMDIS(0.997)PPS(0.02)RS(0.983)PR 81.48899999999998 0.0030412 88142000.0 87733.0 97198.0 83827.0 104263.0 100206.0 104472.0 92670.0 90501.0 102789.0 91675.0 True False 87260.65527605264 100433.17667256833 95629.11296265427 117462.6851096737 112966.6401325053 97250.09654063525 88187.19806622184 97254.6441747663 77458.02825203372 85824.22301308386 1.0167369096105863 1.1702194688935004 1.1142438533708094 1.3686425694965694 1.316255902663792 1.1331311036257157 1.0275327287586133 1.1331840913950353 0.9025194232195413 1.0 16.389097270732915 1.8207984284619554 1.2235008390042352 0.9792456865710855 1.1955689722396141 0.38391861958846474 0.10650528934149447 0.5127072763652979 1.4272854364281329 0.09055549906183652 0.0371620152882597 66.19092167520462 -1.8207984284619554 0.21632328566852865 GSDIDNPTLTVMDISPPSRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 GSDIDNPTLTVMDISPPS(0.122)RS(0.878)PR;GSDIDNPTLTVMDISPPS(0.182)RS(0.818)PR;GSDIDNPTLTVMDISPPS(0.008)RS(0.992)PR 191.92 7.5951e-18 261058000.0 127051.0 173453.0 157160.0 182644.0 177024.0 187506.0 200391.0 162279.0 193124.0 175353.0 True False 126366.97153269313 179226.27825044747 179286.76194079182 205766.71167308887 199566.95709654735 174544.15156164678 190697.32176204052 174389.0830160651 145531.17792901752 164161.82141274368 0.7697707691423277 1.0917658972595583 1.092134336704393 1.2534382836539084 1.2156721665190735 1.0632444868091426 1.1616423363297121 1.0622998789566762 0.8865104972435455 1.0 17.324759117612807 -0.4710810321947898 5.944358633646053 0.9999999964108692 1.0806640091967312 0.010886523547675497 0.1377974368968062 0.0 0.0 0.13201669298167432 0.0311166327138845 0.3380017647618068 0.4710810321947898 0.080664012785862 GSDS(ph)DSEGDNPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSDSDSEGDNPEK 13 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 GSDS(0.877)DS(0.123)EGDNPEK;GSDS(0.998)DS(0.002)EGDNPEK 355.05 4.219999999999998e-76 1039100000.0 1865060.0 1514760.0 1382790.0 1367940.0 1389400.0 1664980.0 1760720.0 1763470.0 2193400.0 1756730.0 True False 1855018.724187648 1565177.8709082445 1577474.8125738555 1541121.0637419517 1566331.8543810027 1549883.8515413394 1675547.2469964202 1895069.0861192157 1652865.9600541962 1644613.987387778 1.1279356362121584 0.9516992333224006 0.9591763323620013 0.9370716019445942 0.952400907685873 0.9423997749180626 1.0188088267799393 1.1522880752882614 1.005017574172238 1.0 20.649317573447625 1.9959228375588376 20.802896532693147 1.0734042392952745 0.9739002024572148 0.1826269501519484 0.06598106588636722 22.01343208159259 112320.01415512583 0.024713176615412794 0.017718976501841965 99.06559163608878 -1.9959228375588376 -0.09950403683805975 GSDS(ph)DSEGDNPEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSDSDSEGDNPEKK 14 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 GS(0.001)DS(0.99)DS(0.01)EGDNPEKK;GSDS(1)DSEGDNPEKK 212.95 1.0504e-09 1214490000.0 1526110.0 1266780.0 1217200.0 983890.0 1094510.0 1512390.0 1493850.0 1401930.0 2133800.0 1474300.0 True False 1517893.5933267602 1308944.0065153195 1388571.1799079392 1108450.3731194856 1233889.3608309706 1407842.0390831183 1421586.7684388228 1506549.1354562945 1607953.581455113 1380208.911788266 1.0997564067023038 0.9483665808383949 1.0060586973814267 0.8031033299758391 0.8939873886426971 1.020020974403831 1.0299794156501612 1.0915370293503872 1.165007389621742 1.0 20.396455222697 2.2372293954568687 2.016495082209318 1.0899636441843366 0.9471769700976851 0.3275068359108594 0.08169050889026629 0.365032413630853 2.9979985354577248 0.04039145057638405 0.02648636339397233 172.6749724776845 -2.2372293954568687 -0.14278667408665147 GSEEDPLLS(ph)PVETWK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSEEDPLLSPVETWK 15 0 Q13017-2;Q13017;H0YK04;A0A0A0MSK6 Q13017-2 ARHGAP5 Rho GTPase-activating protein 5 1 GSEEDPLLS(1)PVETWK;GSEEDPLLS(1)PVETWK;GSEEDPLLS(1)PVETWK 234.21 1.2559e-17 122531000.0 370475.0 403958.0 349094.0 341486.0 370667.0 468527.0 464823.0 424419.0 544140.0 478596.0 True False 368480.40376364184 417403.4978322326 398243.4008205567 384718.09258665144 417869.2453345647 436138.83128392475 442337.73569370364 456091.30093601305 410043.98810243973 448051.5935333502 0.8224061895590924 0.9315969496739747 0.8888338007683347 0.8586468570566871 0.9326364449219643 0.9734120748115613 0.9872473216876947 1.017943708980614 0.9151713642369148 1.0 18.77330534388261 2.935695685237032 2.587070453120368 0.9844663932844516 0.8804118312545545 0.6416432460835028 0.0360720048702711 0.17536690928412074 2.321050778727814 0.011461876333354661 0.012828177085826425 862.3740613290017 -2.935695685237032 -0.10405456202989716 GSEEDS(ph)PKK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSEEDSPKK 9 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 GSEEDS(1)PKK;GSEEDS(1)PKK;GSEEDS(1)PKK;GSEEDS(1)PKK;GSEEDS(1)PKK;GS(0.002)EEDS(0.998)PKK 144.47 6.0929e-05 4012020000.0 17094450.0 8950780.0 7223510.0 6061460.0 6688980.0 7576230.0 10652340.0 11425350.0 19183070.0 11675770.0 True False 17002415.38057193 9248701.30143924 8240517.420125531 6828840.2145045055 7540781.954309377 7052503.052627086 10137045.618309468 12277967.633751756 14455659.438468505 10930612.362470387 1.5554860804458424 0.8461283773262431 0.7538934825297494 0.6247445237332655 0.6898773558378309 0.645206583012809 0.9273996078311602 1.123264390557608 1.3224931009447523 1.0 23.381870891163906 1.7716462044237868 3.235112021734782 1.1750100898261324 0.8284287265895849 0.1984953301639898 0.2616241299204943 0.33833364202896105 6.972211220905613 0.1484552122724376 0.0729558563446165 59.10799180315764 -1.7716462044237868 -0.34658136323654753 GSEEDS(ph)PKKESK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSEEDSPKKESK 12 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 GSEEDS(1)PKKESK;GSEEDS(1)PKKESK;GSEEDS(1)PKKESK;GSEEDS(0.999)PKKESK 201.3 7.8276e-08 5710952000.0 11132376.0 6311682.0 5132896.0 5151912.0 4712992.0 7224716.0 9241447.0 8094301.0 18855006.0 9124064.0 True False 11072440.52453925 6521762.519877664 5855563.140868179 5804143.530962563 5313163.595107836 6725288.388072129 8794402.902854126 8698338.842647662 14208442.415436141 8541758.42401581 1.2962717949747014 0.7635152150336196 0.6855219792220782 0.6795021871191963 0.6220222267313797 0.7873423777899716 1.0295775724736005 1.0183311691643742 1.6634095358501375 1.0 23.0261016659225 1.690439986605467 1.9358863449542294 1.312083290780577 0.7937760634124352 0.3860873002569909 0.24201605339781154 0.2913963893863287 2.2651271536422297 0.1726092410727723 0.06781227582482238 49.0275268958048 -1.690439986605467 -0.5183072273681418 GSEEVDSHCKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSEEVDSHCKK 11 1 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2;Q9Y4W2-4 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 0 86.344 0.009438600000000002 141730000.0 110960.0 130220.0 129690.0 113700.0 128080.0 141820.0 143500.0 145260.0 176470.0 157410.0 False True 110362.60368881504 134554.2939803476 147949.2247143122 128094.40834207645 144390.22881036336 132016.3172083706 136558.3567767655 156100.03881533415 132981.33307685048 147363.959034519 0.7489117719955077 0.9130746409224061 1.0039715659353052 0.8692383753891357 0.97982050534175 0.8958521342212764 0.9266740502321712 1.0592823363192134 0.9024006544619265 1.0 17.16902420049785 4.706065663662032 3.258382150098829 0.9567107106209415 0.7270529967848933 0.5525445076765083 0.05527328594164485 0.21601351684830694 3.773469638010485 0.01351019698278626 0.11951148108365436 50823.62801303192 -4.706065663662032 -0.22965771383604816 GSEGDCS(ph)PEDKNSVTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSEGDCSPEDKNSVTAK 17 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 GSEGDCS(1)PEDKNSVTAK;GSEGDCS(1)PEDKNSVTAK 185.61 3.4482e-10 698560000.0 2083450.0 1605480.0 1350680.0 1351550.0 1370450.0 2107590.0 1946850.0 1932510.0 3386000.0 2036710.0 True False 2072232.9366930553 1658917.4312668468 1540844.003678981 1522656.0914224554 1544968.6842064527 1961897.2640332093 1852673.4278107705 2076723.7092869407 2551565.6700754585 1906725.424084843 1.0868019645186457 0.8700347781134063 0.8081100635758967 0.7985712427122398 0.8102732908950327 1.0289353879963323 0.9716519245029654 1.089157192249477 1.338192504198718 1.0 20.86266567420617 1.9899685104999134 1.398246519662339 1.163962154707269 0.8751931541541843 0.47110991288657755 0.11677939679548102 0.3506577514619089 1.2754013004804183 0.0813283328433617 0.038116368817769974 97.71663667376691 -1.9899685104999134 -0.28876900055308463 GSEGYLAATYPTVGQTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 GSEGYLAATYPTVGQT(0.001)S(0.999)PR;GSEGYLAATYPTVGQT(0.002)S(0.998)PR;GSEGYLAATYPTVGQTS(1)PR;GSEGYLAATYPTVGQT(0.172)S(0.828)PR;GSEGYLAATYPTVGQT(0.024)S(0.976)PR;GSEGYLAATYPTVGQT(0.001)S(0.999)PR 401.44 1.9968999999999991e-147 4249710000.0 4165250.0 4930560.0 4660170.0 4861200.0 4662880.0 5227930.0 5235930.0 4335860.0 5172710.0 5318590.0 True False 4142824.756802781 5094670.709013536 5316281.42907623 5476627.421569941 5256670.128944937 4866535.504323484 4982648.062705014 4659423.89025096 3897964.9312628508 4979153.032726017 0.8320340285935421 1.0232002662959476 1.0677079804806964 1.0999114479057421 1.0557358037390916 0.9773821917779306 1.000701932629109 0.9357864399078313 0.7828570252095203 1.0 22.247468926194713 1.6197775434918353 3.3431702488997717 0.8835389492182015 1.0156783475277833 0.2378506127452522 0.08426360016540839 0.24581809483631997 6.485576673007445 0.052286174054347344 0.02224914612926548 41.66559072125144 -1.6197775434918353 0.13213939830958177 GSEPEEEAPVREDESEVDGDCSLTGPPALVGS(ph)YGTSPEGIGGYIHSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSEPEEEAPVREDESEVDGDCSLTGPPALVGSYGTSPEGIGGYIHSHR 48 1 Q8TBX8;Q8TBX8-3;Q8TBX8-2 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 1 GSEPEEEAPVREDESEVDGDCSLTGPPALVGS(0.209)Y(0.183)GT(0.209)S(0.209)PEGIGGY(0.088)IHS(0.101)HR 118.95 6.2770000000000006e-09 104810000.0 30048.0 40286.0 31741.0 38639.0 39679.0 29448.0 32049.0 12276.0 23992.0 29515.0 True False 29886.224906646636 41626.895156598715 36209.85690228219 43530.69343825406 44731.88545414126 27412.329073135654 30498.667430930698 13192.09745626492 18079.493076329116 27631.3274309372 1.0816065562302577 1.506510871062658 1.31046389257941 1.575410864608526 1.6188829713645083 0.9920742730023044 1.1037713445783681 0.4774326347236757 0.6543114195840825 1.0 14.754017251581452 2.250708107847777 1.8046402110070148 0.6820083256585463 1.4158625716841675 0.6395380844064618 0.2167015195999195 0.19438963813995086 1.2708076590419948 0.10666608918577812 0.06831885548226316 178.11812215443877 -2.250708107847777 0.7338542460256212 GSES(ph)PNSFLDQESR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSESPNSFLDQESR 14 0 Q5T4Y8;A0A5H1ZRR2;G9CGD6-3;G9CGD6;G9CGD6-2;Q6P9H4 Q5T4Y8 CNKSR3 Connector enhancer of kinase suppressor of ras 3 1 GSES(0.984)PNS(0.016)FLDQESR 260.08 2.0034e-24 82177000.0 68326.0 79138.0 69643.0 78820.0 74018.0 73487.0 77051.0 67583.0 73209.0 81184.0 True False 67958.14040773227 81772.06049006875 79448.12905219237 88798.60391840327 83443.75356094223 68407.01665979075 73323.7487665962 72626.3866395204 55167.622900340946 76002.76761488072 0.8941534965159166 1.0759089840572917 1.0453320523111722 1.1683601361513738 1.0979041445407132 0.9000595479156895 0.9647510356220239 0.9555755522947659 0.7258633419757148 1.0 16.21376433431046 2.733882175784427 24.854078205707854 0.9152674315592493 1.0630320913183562 0.3770933791575609 0.0941633239248165 398.5725350982939 2117398.054149481 0.03001626130172056 0.029163981309905145 541.8538653518824 -2.733882175784427 0.1477646597591069 GSET(ph)PGATPGSK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK 289.44 4.928199999999998e-35 6922280000.0 11966310.0 10173970.0 9186180.0 8740840.0 9319770.0 10848250.0 10219550.0 10537150.0 13444660.0 9330830.0 True False 11901884.716542015 10512604.441155272 10479514.296292083 9847429.447781486 10506587.466895383 10098336.01153369 9725191.324027812 11323485.639563518 10131403.69221404 8735328.440874532 1.3624999674712248 1.2034584059787006 1.19967032347131 1.1273107261431852 1.2027695968170742 1.1560339236108566 1.1133171912027364 1.2962861918938762 1.159819434471057 1.0 23.05843051758502 -4.635344747064954 0.2559610115019697 1.4367984940428202e-30 1.2192392848747138 0.44032400385736936 0.07051513332221748 156.53289560341966 1.8389961775040238 82.11845777370004 0.09879793000601425 2.3155558101306737e-05 4.635344747064954 1.2192392848747138 GSEVGFHGAAPDISVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSEVGFHGAAPDISVK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 118.47 0.00026968 287860000.0 364800.0 482270.0 381930.0 469880.0 385940.0 500050.0 492860.0 396050.0 558780.0 536620.0 False True 362835.95733309025 498322.0654116292 435702.4242049291 529366.7598221179 435087.1713544007 465482.7204910852 469018.4788919619 425605.26210115035 421076.1562683888 502372.45217650366 0.7222449315465478 0.9919374823453667 0.8672896420121565 1.0537336542413158 0.8660649473700383 0.9265689598910221 0.9336070814790156 0.847190685431171 0.8381752511390648 1.0 18.938397829992006 4.752906496802312 24.151141966405515 0.9178161056333842 0.7222447133661788 0.43411203811331767 0.06899959876723073 1514.1450266565528 2548977.39306001 0.015910573912520536 0.32983284587248973 56611.739136910845 -4.752906496802312 -0.19557139226720544 GSFKDDPQLYQEIQER ddPTM_BT-474_Trastuzumab_2h_R1 1 GSFKDDPQLYQEIQER 16 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 0 69.289 0.042525 250840000.0 254400.0 259200.0 252090.0 296780.0 246820.0 333210.0 279010.0 265980.0 363750.0 324750.0 False True 253030.33866649683 267827.3153102909 287582.08079443965 334352.3175704613 278251.06398324424 310175.97699197027 265513.22037829505 285828.7782190733 274108.68650027964 304024.17696753726 0.8322704502988083 0.8809408448423779 0.9459184584032169 1.0997556868846072 0.9152267650508433 1.0202345750452928 0.8733292958034904 0.940151474366439 0.9016016069325569 1.0 18.213826530356492 4.351071789404454 3.185312875382547 0.9597629347546456 0.8413331272946203 0.3302806620457802 0.06190012110077235 0.2898140298777643 5.594190793211297 0.015631769857120358 0.05441306056911864 22442.528708436977 -4.351071789404454 -0.1184298074600253 GSFMLGLETHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSFMLGLETHDR 12 0 Q92905 Q92905 COPS5 COP9 signalosome complex subunit 5 0 ; 149.23 6.7093e-05 528480000.0 492680.0 637260.0 614450.0 682820.0 617480.0 655740.0 623400.0 531850.0 683950.0 636700.0 False True 490027.4656218933 658470.8138681957 700959.2191048578 769264.9419888875 696112.4179093011 610410.2372459237 593243.7603807356 571539.3476795785 515399.68696045753 596065.2608937051 0.8221037154340701 1.1046958396483693 1.1759773049915387 1.2905716747114184 1.1678459785856188 1.0240661170736751 0.995266457050795 0.9588536443520398 0.8646698956884312 1.0 19.185110768905083 2.3791000139453002 2.2858426627468473 0.9476061308502716 1.1237203991018474 0.2847047737781888 0.11672092113542146 0.39068594561923253 4.182839804748508 0.05088716700398031 0.039303914718794845 239.38669780418346 -2.3791000139453002 0.17611426825157583 GSFS(ph)DTGLGDGK ddPTM_BT-474_Trastuzumab_2h_R1 8 GSFSDTGLGDGK 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 GSFS(0.993)DT(0.007)GLGDGK;GSFS(0.838)DT(0.162)GLGDGK;GSFS(0.999)DT(0.001)GLGDGK;GSFS(1)DTGLGDGK;GSFS(0.998)DT(0.002)GLGDGK;GSFS(0.99)DT(0.01)GLGDGK;GSFS(1)DTGLGDGK;GS(0.001)FS(0.988)DT(0.01)GLGDGK 313.99 2.3158000000000002e-46 10338370000.0 21288010.0 19784450.0 16767520.0 16898090.0 16342310.0 21345100.0 20152640.0 20060790.0 28363790.0 21883640.0 True False 21173397.719480272 20442963.458297443 19128241.070103478 19037386.46139982 18423406.310039755 19869563.477960713 19177779.81263909 21557828.016427573 21373914.009813797 20487007.359673217 1.0335036907907864 0.9978501544611894 0.9336766827035781 0.9292419398878705 0.8992726944738904 0.9698616849756259 0.9360947392633235 1.0522682809624098 1.0432911764305006 1.0 24.288205922221977 1.7331303184655096 8.734779642108814 1.0347806819695824 0.9549532736522657 0.4469933793344206 0.03797459210561374 0.09630510393534254 25.399662076556677 0.019444722999811884 0.010419889340657428 54.09166110946669 -1.7331303184655096 -0.07982740831731672 GSFS(ph)SENYWR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSFSSENYWR 10 0 Q6P6C2-3;Q6P6C2;Q6P6C2-1;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 GS(0.197)FS(0.801)S(0.001)ENYWR;GS(0.171)FS(0.823)S(0.006)ENYWR;GS(0.275)FS(0.719)S(0.006)ENYWR 240.41 2.9616e-12 1295750000.0 857180.0 852800.0 778370.0 828540.0 712840.0 831190.0 754620.0 740850.0 800120.0 826390.0 True False 852565.0381216508 881184.9324715133 887957.7302866755 933433.0790478792 803615.9486662984 773731.7917107997 718116.1476716562 796135.988960074 602941.1470587049 773649.0826919253 1.1020048458600067 1.1389982256624864 1.147752579498978 1.2065329099854714 1.038734442584877 1.0001069076674745 0.9282194779743791 1.0290660284762507 0.7793470716216204 1.0 19.56131980119306 2.8848461370179947 2.155215792098288 0.9493894220661107 1.1473611883447998 0.6530883891830985 0.06885189378252117 0.1971824312334242 1.8096718803496137 0.022889888539811665 0.0249301108690721 767.0896746839794 -2.8848461370179947 0.19797176627868918 GSFSEQGINEFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSFSEQGINEFLR 13 0 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 ;;; 257.66 1.4234000000000003e-17 969040000.0 661990.0 931890.0 818080.0 899470.0 821880.0 789830.0 825090.0 694300.0 873140.0 806180.0 False True 658425.919394003 962907.3953105998 933258.5531211699 1013342.8097752631 926541.5463355827 735230.911159832 785177.244550114 746112.1915839632 657966.3464765759 754728.9021945772 0.8724005632743792 1.2758321464974878 1.2365480511048004 1.342658015121319 1.2276481576913434 0.9741655699443211 1.040343416380372 0.9885830387764951 0.8717916387769992 1.0 19.52559899742489 2.736341014077283 24.653817661680545 0.9809235299507781 1.2066832838782613 0.43089555505901256 0.12339197984627912 152.97494289844965 1699130.8975065465 0.03896214616351966 0.038402459782632674 544.9303718142905 -2.736341014077283 0.22575975392748315 GSFSQADVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSFSQADVHR 10 0 Q04206;Q04206-4;Q04206-2;A0A087X0W8;E9PKH5;Q2TAM5;Q04206-3 Q04206 RELA Transcription factor p65 0 ; 136.96 0.00010394 556640000.0 327830.0 409810.0 467760.0 371180.0 254790.0 325740.0 384870.0 283270.0 512810.0 365700.0 False True 326064.99970533745 423450.27811462333 533616.5421571942 418171.34994205757 287235.9962413529 303222.36050948105 366252.3677538238 304409.04581591394 386434.8468019481 342360.7129084784 0.9524019182437642 1.2368541779144566 1.558638366020237 1.2214349782997598 0.8389864415258953 0.8856809472485822 1.0697850364966737 0.8891471314855279 1.1287359566436346 1.0 18.385157631362617 3.3389908576912597 6.552344870879822 0.9620985180364074 1.2699100006607749 0.4129929786643197 0.1590784201445679 0.19786069662228603 11.143386931255058 0.04489658648465907 0.06086419132940971 2182.6839638018773 -3.3389908576912597 0.3078114826243674 GSGDGEMGKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSGDGEMGKPR 11 1 O60547 O60547 GMDS GDP-mannose 4,6 dehydratase 0 ;;; 146.71 3.2507e-05 1433330000.0 2175380.0 2200720.0 1963110.0 1917870.0 1826610.0 2045820.0 2536540.0 2206640.0 3223870.0 2375390.0 False True 2163667.995787438 2273969.634836665 2239498.8243419933 2160672.1453563594 2059217.9563343048 1904397.2787422717 2413837.869676212 2371310.6818908793 2429390.436144761 2223790.5765263042 0.9729639196363619 1.022564651024263 1.007063726225617 0.971616737728721 0.9259945509576393 0.8563743811330722 1.0854609670334934 1.0663372292884747 1.092454686061138 1.0 21.084589499277183 2.1940355009248567 24.999998735717515 1.0672381473092252 0.9634985067560965 0.5064440422266665 0.04890208860955987 114.14952843430065 64092.06224977615 0.01945715465196942 0.014370129316548061 156.32754256487755 -2.1940355009248567 -0.10373964055312868 GSGDTSNFDDYEEEDIRVSIT(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSGDTSNFDDYEEEDIRVSITEK 23 1 P22694-2;P22694-4;A0A0A0MS54;P22694-9;P22694-6;P22694-7;P22694-5;P22694;P22694-3;P22694-10;A0A087WVC4 P22694-2 PRKACB cAMP-dependent protein kinase catalytic subunit beta 1 GSGDTSNFDDYEEEDIRVS(0.465)IT(0.535)EK 60.481 0.096413 28424000.0 27396.0 25322.0 23958.0 26516.0 21233.0 28519.0 26223.0 28899.0 39502.0 35790.0 True False 27248.502979981742 26164.827462527766 27331.07815333094 29872.922881253256 23936.896692149017 26547.548656504885 24954.493308411962 31055.59012614858 29767.26139968127 33505.85155863943 0.8132460962018367 0.780903222732186 0.8157105962669874 0.8915733070974754 0.7144094412958422 0.79232574077526 0.7447801547362102 0.9268706414399711 0.8884197838573015 1.0 15.03212545355027 1.65733074742693 6.057438092803723 0.9328255802077975 0.7946374856161376 0.6294830969442168 0.050913292495639584 0.09159051467088833 7.003693572654659 0.026272620402941524 0.013006385735239073 45.42874585013753 -1.65733074742693 -0.13818809459165993 GSGEKPVSAPGDDTES(ph)LHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 GS(0.001)GEKPVS(0.002)APGDDT(0.141)ES(0.941)LHS(0.915)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.126)ES(0.874)LHS(1)QGEEEFDMPQPPHGHVLHR 213.09 8.7577e-32 903400000.0 413580.0 396600.0 352250.0 417200.0 391960.0 464810.0 446280.0 252785.0 574760.0 452290.0 True False 411353.33123305766 409800.5912502376 401843.73818811355 470017.4772235205 441873.78267106554 432678.7787450482 424691.73144484207 271649.1003162208 433118.09938941797 423424.4649750498 0.9714916478841075 0.9678245475834398 0.94903287700155 1.1100385454846504 1.0435716856774038 1.021855878758786 1.0029928985559844 0.6415526800800886 1.022893420707137 1.0 18.691745103438652 1.9497950945116918 24.99990844386725 0.8418089992194571 1.0119485707641749 0.17441735496342126 0.1077870352289468 393.91332510074056 196151.3964818218 0.04295180776500663 0.027722128402482348 89.0830534142072 -1.9497950945116918 0.17013957154471782 GSGEKPVSAPGDDTESLHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 GSGEKPVSAPGDDT(0.024)ES(0.402)LHS(0.574)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.016)ES(0.211)LHS(0.773)QGEEEFDMPQPPHGHVLHR;GS(0.003)GEKPVS(0.003)APGDDT(0.023)ES(0.143)LHS(0.827)QGEEEFDMPQPPHGHVLHR 161.2 3.3930000000000004e-18 1531730000.0 431920.0 563920.0 493460.0 559630.0 576350.0 634190.0 614320.0 219975.0 666680.0 510790.0 True False 429594.59071082284 582689.7363031607 562934.8787687902 630479.1006198437 649744.7562059106 590349.9380226806 584602.9946697035 236390.65151041673 502385.64705431403 478190.94489068 0.8983745830005901 1.2185294232963158 1.17721777207112 1.3184672511186477 1.3587558759701102 1.2345485508046192 1.222530457583948 0.49434363832309364 1.0505963201983366 1.0 18.8672272856135 1.7696525804851972 24.9999999998152 0.7987701819078419 1.215107526811562 0.4382683477033217 0.1816875399898595 19.93243275218106 16035.366861380126 0.08101973084807566 0.04494047316538154 58.837279058330026 -1.7696525804851972 0.4163373449037202 GSGEQDWVNRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSGEQDWVNRPK 12 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 0 ; 159.5 6.4386e-05 1831700000.0 2717000.0 2865000.0 2364800.0 2559700.0 2465500.0 2978400.0 2827300.0 2697900.0 3510700.0 3087600.0 False True 2702371.973887077 2960359.7930709277 2697743.2847899236 2883757.757548043 2779466.8108365913 2772510.218399455 2690532.6976651466 2899230.9976586094 2645535.025969848 2890546.7245726488 0.9348999450222025 1.0241522020401177 0.933298625431758 0.9976513207806356 0.9615713135540198 0.9591646434324133 0.930804084498211 1.0030043704231228 0.9152369008534106 1.0 21.462910962476204 GSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEK 34 0 Q9Y5A9;Q9Y5A9-2 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 0 128.86 3.2605e-08 91491000.0 33589.0 48575.0 39303.0 39232.0 42153.0 49675.0 42938.0 39438.0 52655.0 48482.0 False True 33408.160556088726 50191.78951079245 44836.52077219991 44198.76717745241 47520.93468959439 46241.084172372095 40860.924900911145 42381.06382210619 39678.88079085154 45387.83725247151 0.7360597591432835 1.1058422817460718 0.987853211044076 0.9738020106927578 1.0469971156646536 1.01879902131389 0.900261554072752 0.9337537628497249 0.8742183631737355 1.0 15.470018124501355 -0.5518473580354042 6.737694972524037 1.000005396608898 0.9597453227165231 0.016370052795839918 0.09746596949547061 0.0 0.0 0.08890676657861485 0.020955525847036027 0.2806419840133407 0.5518473580354042 -0.04026007389237485 GSGGGGGGGGQGSTNYGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 214.53 3.4415e-18 0.0 4912.7 5491.5 6418.6 7251.2 5527.3 6323.2 6840.3 6746.6 8371.9 6959.2 False True 4886.250569052283 5674.281257818149 7322.283088528669 8169.201176517714 6231.168892126184 5886.092067211744 6509.408556516431 7250.065550540639 6308.757422712558 6515.057897929125 0.7499934222542252 0.8709487078574966 1.1239014607769071 1.2538954073016564 0.956425712518506 0.9034596713381006 0.9991328793233765 1.1128167491566183 0.9683348208951233 1.0 12.6695622844354 4.425719580729386 4.508760884452912 1.0443489966525474 0.7732833250361264 0.4911044874598871 0.09664731934062071 0.15631407297592312 6.599705223904447 0.0254804860298859 0.08095577544531832 26651.37258404227 -4.425719580729386 -0.27106567161642103 GSGGGGGPQVPHQS(ph)PPKR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSGGGGGPQVPHQSPPKR 18 1 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 GSGGGGGPQVPHQS(1)PPKR;GSGGGGGPQVPHQS(1)PPKR;GSGGGGGPQVPHQS(1)PPKR 140.45 5.9747e-08 878178000.0 1037763.0 945782.0 862392.0 836768.0 875205.0 1119740.0 1170538.0 1018207.0 1637158.0 1223461.0 True False 1032175.7993143074 977261.782132708 983809.2975543598 942702.7430042446 986657.1690035467 1042335.0093844382 1113914.605050603 1094190.7766903832 1233702.3476932652 1145378.6715223398 0.9011655489816545 0.8532215645624123 0.8589380281080005 0.8230489762405689 0.861424429784576 0.9100352881541396 0.972529550921428 0.9553091950246271 1.0771130791649308 1.0 20.127393213245163 2.1030397223477064 1.134107426466833 1.022931503770489 0.8557544876778603 0.8192870704052485 0.03196676610237599 0.19939804384783938 0.47946243014502954 0.023166791814615985 0.011660844640054582 126.77678157792722 -2.1030397223477064 -0.16717701609262858 GSGPQRPHS(ph)FSEALR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSGPQRPHSFSEALR 15 1 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 GSGPQRPHS(0.986)FS(0.014)EALR;GSGPQRPHS(0.786)FS(0.214)EALR;GSGPQRPHS(0.984)FS(0.016)EALR;GSGPQRPHS(0.999)FS(0.001)EALR 212.85 4.0552e-10 4936100000.0 1001350.0 1141340.0 1141160.0 1379650.0 1211170.0 1441210.0 1346230.0 1125410.0 1476960.0 1467710.0 True False 995958.8428604434 1179328.8119454002 1301825.4088594664 1554313.548541297 1365405.320332979 1341582.5449434193 1281107.711801986 1209393.8089161871 1112982.9982500433 1374039.4912302492 0.7248400422383127 0.8582932437331082 0.9474439542446297 1.131200055356225 0.993716213433182 0.9763784472760899 0.932366005474081 0.8801739809045472 0.8100080131274332 1.0 20.389992038533528 4.553805696034106 2.495693571827912 0.9567845354647796 0.7154541591579261 0.46205349137826257 0.07892923095928552 0.3630508208951572 3.6403002868223644 0.022030158571138495 0.15504339472271894 35793.62600842187 -4.553805696034106 -0.2413303763068535 GSGS(ph)PTHSLSQK ddPTM_BT-474_Trastuzumab_2h_R1 5 GSGSPTHSLSQK 12 0 I3L2R2;I3L419;I3L156;Q9BSJ6-2;Q9BSJ6 I3L2R2 FAM64A Protein FAM64A 1 GSGS(0.992)PT(0.007)HSLSQK;GSGS(1)PTHSLSQK;GS(0.001)GS(0.999)PTHSLSQK;GS(0.001)GS(0.999)PTHSLSQK;GSGS(1)PTHSLSQK 273.07 9.7788e-28 2326480000.0 2151710.0 2104710.0 1939820.0 1768840.0 1763590.0 2746500.0 2779030.0 2214180.0 3369170.0 2966090.0 True False 2140125.432437453 2174764.00002594 2212929.794782304 1992774.9626367474 1988172.7328831113 2556640.9195655743 2644597.7019744567 2379413.354978224 2538883.198065009 2776791.5968025923 0.7707187802288639 0.783193093255586 0.796937659034419 0.7176537716879362 0.715996380561092 0.9207176089518146 0.9523932962846928 0.856893026368295 0.9143225588079678 1.0 21.404987473689523 2.7299017873011944 24.913181817758996 0.916877896715583 0.7584046429946064 0.8070563567438072 0.041833098615301434 284.36774707253664 818181.3873707742 0.013867143247336804 0.013265090142583959 536.9103640681129 -2.7299017873011944 -0.15847325372097654 GSGS(ph)QSSVPSVDQFTGVGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSGSQSSVPSVDQFTGVGIR 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 GS(0.152)GS(0.848)QSSVPSVDQFTGVGIR;GS(0.001)GS(0.994)QS(0.005)SVPSVDQFTGVGIR 247.0 4.5743999999999994e-30 159682000.0 121297.0 128331.0 128644.0 127871.0 129242.0 144571.0 125685.0 112355.0 136437.0 135323.0 True False 120643.9504293635 132602.4197572723 146755.95700630703 144059.455489091 145700.20262264987 134577.1470535279 119605.13638667423 120739.50062712988 102813.92951213391 126686.57028415077 0.9523026012841453 1.0466967371510068 1.1584176339855263 1.1371328086787245 1.15008404044606 1.062284240165939 0.9441027262669335 0.9530568264364411 0.8115613934573184 1.0 16.95090407064903 2.245659432464389 3.0417438756993933 0.9221236457516928 1.0945479364803545 0.5418033694762006 0.07129968479163158 0.19807947675556126 3.799710000947916 0.02985072447973373 0.022064689628169584 176.05948715578614 -2.245659432464389 0.17242429072866172 GSGTAEVELK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSGTAEVELK 10 0 P14618;P14618-3;H3BUW1;H3BTJ2;H3BT25;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;; 147.95 6.0455e-05 309889000.0 560920.0 614750.0 603900.0 580730.0 597850.0 647480.0 632590.0 525010.0 603490.0 628610.0 False True 557900.0690440704 635211.5821257773 688923.8708071017 654250.3584564124 673982.6537654257 602721.2316039761 601989.2049715256 564188.9121467612 454767.97585169476 588491.5716199032 0.9480170931053006 1.0793894301277263 1.170660556634218 1.1117412551134747 1.1452715489368805 1.0241798874789385 1.022935984137323 0.9587034706270379 0.7727688853722815 1.0 19.16666222756078 1.8344422924360477 1.6461522460396232 0.8885618338422826 1.09012669529434 0.48886526342240266 0.07854872274988457 0.2902225022178939 1.4945494736382559 0.05535917689479318 0.023695172098718586 68.30339527358599 -1.8344422924360477 0.20156486145205743 GSGTAEVELKK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSGTAEVELKK 11 1 P14618;P14618-3;H3BUW1;H3BTJ2;H3BT25;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;; 172.13 2.2005e-05 7047900000.0 6324100.0 5495900.0 4802600.0 4280000.0 4350900.0 6961600.0 7075700.0 5856900.0 9277900.0 6711400.0 False True 6290051.748273571 5678827.70915829 5478764.335052465 4821847.561161716 4904961.325195271 6480360.977843694 6733421.359201106 6293971.618735589 6991485.862490576 6283072.706081372 1.00111076896905 0.903829698431114 0.8719880528757182 0.7674346274068514 0.7806628308546819 1.0313999663844997 1.07167649877485 1.0017346469098898 1.11274947617963 1.0 22.58303884399615 2.678421610598049 8.586310924787155 1.042888483662803 0.8622323836853661 0.6332906792687061 0.06790671361207451 0.26419912643119636 35.68635317273822 0.0233825640804312 0.02205660411874977 476.89372785816465 -2.678421610598049 -0.1806560999774368 GSGTAS(ph)DDEFENLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSGTASDDEFENLR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGT(0.001)AS(0.999)DDEFENLR 342.47 3.998299999999998e-69 28031100000.0 7157450.0 8256380.0 7772350.0 8320110.0 7958170.0 7862170.0 8892770.0 7319980.0 8386560.0 8848090.0 True False 7118915.084467459 8531188.6172129 8866629.321522733 9373435.072919905 8971595.777730882 7318676.693457445 8462592.741419617 7866234.077705291 6319804.662146492 8283397.32096904 0.8594197294443733 1.0299142111192214 1.0704097579718008 1.131593078264094 1.0830816668687013 0.8835356327687616 1.0216330828411373 0.9496386292846634 0.7629483914948999 1.0 22.981791159860013 2.7405807447091917 24.99707703856862 0.9311007443213736 1.0419540217948458 0.257466753543244 0.09371479164596706 266.15981356853655 3293479.581834517 0.029937071155195238 0.03035772512492207 550.2762192158089 -2.7405807447091917 0.11085327747347218 GSHFFPGNNVIYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSHFFPGNNVIYEK 14 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 0 ; 99.451 0.0021758000000000003 796320000.0 1019650.0 1246630.0 1138710.0 1282020.0 1172670.0 1203280.0 1153920.0 904180.0 1264740.0 1122320.0 False True 1014160.317693764 1288123.325946252 1299030.470155248 1444323.6005515286 1322002.5735403565 1120100.0858164441 1098100.4811975267 971654.5029330095 953061.7736477373 1050692.5767335051 0.9652303063248852 1.225975470342519 1.236356379516642 1.3746395782501688 1.2582201519404717 1.0660588174123393 1.0451206237807522 0.9247752620026908 0.9070795728001697 1.0 20.002909180679065 2.3536283374698432 1.9178141327695524 0.9468781243238865 1.2210057081908725 0.5605218559598232 0.1016624001738223 0.24583800536210013 1.8466175880506082 0.04811563969137485 0.03474811820945241 225.75030070130546 -2.3536283374698432 0.274127583866986 GSHQIS(ph)LDNPDYQQDFFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSHQISLDNPDYQQDFFPK 19 0 P00533;E9PFD7 P00533 EGFR Epidermal growth factor receptor;Receptor protein-tyrosine kinase 1 GS(0.025)HQIS(0.975)LDNPDYQQDFFPK 131.26 1.0271e-05 175590000.0 111600.0 141360.0 122320.0 144990.0 133190.0 161740.0 133280.0 91515.0 119610.0 131870.0 True False 110999.15799992564 146065.08214607535 139541.59277550038 163345.71913384047 150150.95702102061 150559.29449500673 126832.73722095655 98344.31400375391 90133.7181918859 123453.94370041303 0.8991139097936672 1.1831544442236126 1.1303129620073329 1.3231308311238175 1.216250793780987 1.2195584035806142 1.0273688585335343 0.7966073100297799 0.7300999505581962 1.0 16.913613398128135 1.9390434064605258 3.3151441944604834 0.8250266450455929 1.170270327972686 0.5825640145981046 0.12042783793042182 0.1623057681251286 3.287343031155754 0.05956534236748792 0.03355038736915843 86.90472836745877 -1.9390434064605258 0.3452436829270932 GSIDEVDKR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSIDEVDKR 9 1 Q9UNM6;J3KNQ3;A0A087WUL9;Q9UNM6-2 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ;;;;; 125.56 0.00079861 4662160000.0 3559430.0 3619310.0 3146970.0 3129040.0 3093240.0 3612400.0 3883360.0 3561560.0 4758380.0 3829420.0 False True 3540266.4243698507 3739776.5454309043 3590036.0220464068 3525176.1431723 3487145.778930108 3362683.290674922 3695507.0409241733 3827341.692435225 3585741.008025297 3585023.1370685888 0.9875156418836016 1.0431666414540506 1.0013982852512124 0.9833063855913564 0.9726982631920994 0.9379809173071418 1.0308181843272357 1.0675919083648582 1.0002002416523579 1.0 21.773550999165273 2.0402995878698547 24.995445601240817 1.0348820550729565 0.9894819298900283 0.23155859768846487 0.030805222987050136 181.72728569225924 112713.81353628685 0.012167776023365301 0.008986479470576887 109.72348368742533 -2.0402995878698547 -0.04540012518292824 GSIFVVFDSIESAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSIFVVFDSIESAKK 15 1 P05455;E7ERC4;E9PGX9 P05455 SSB Lupus La protein 0 153.2 4.3210000000000015e-06 294980000.0 444200.0 436990.0 455660.0 394120.0 412620.0 549550.0 535250.0 496370.0 777230.0 542470.0 False True 441808.47655525984 451534.9479839665 519812.9673322797 444015.55158996553 465164.7112096509 511560.90200155176 509357.9126464367 533411.6499157888 585692.0808484191 507849.1001680673 0.8699601444780506 0.8891124309062195 1.023557917421244 0.8743060713172933 0.9159506456853218 1.0073088675991668 1.0029709858260456 1.0503349316544262 1.15327974521288 1.0 18.954040359663537 2.3008558080505312 1.2383617361732213 1.0732453933211403 0.9154323375656094 0.585133854688902 0.05547089195905047 0.32761981879793795 0.9851636695529262 0.03393912530723213 0.02057702784061033 199.9197997240879 -2.3008558080505312 -0.15781305575553095 GSKPS(ph)PLSVK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSKPSPLSVK 10 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 GSKPS(1)PLSVK;GS(0.001)KPS(0.998)PLS(0.001)VK;GS(0.001)KPS(0.999)PLSVK;GS(0.002)KPS(0.998)PLSVK 138.55 3.7402e-05 5935170000.0 9829060.0 8838570.0 7919360.0 7583100.0 7592590.0 10228400.0 10453900.0 9650200.0 14268200.0 10111900.0 True False 9776141.433071218 9132756.45942161 9034337.051688913 8543119.68248723 8559461.331693292 9521334.783063736 9948204.919223893 10370346.92672268 10751993.294084666 9466549.884766862 1.0327037360044484 0.9647396961502969 0.9543431515875234 0.9024533527504489 0.9041796045956283 1.005787208535713 1.0508796805932528 1.0954726962787327 1.135787950728098 1.0 23.17440729585693 2.3089896009241078 2.4931359844974206 1.083942221797891 0.9501976769169747 0.5830455191373967 0.04703356401512511 0.18836377775113683 2.4025970138297303 0.019883890190703468 0.01480312453381276 203.6993301811869 -2.3089896009241078 -0.13374454488091625 GSKS(ph)PLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSKSPLKR 8 2 K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26;K7EPU6 K7EMM8 GLYR1 Putative oxidoreductase GLYR1 1 GS(0.189)KS(0.811)PLKR;GS(0.087)KS(0.913)PLKR 82.417 0.010606 4480000000.0 4198000.0 3386830.0 3197720.0 2800430.0 2865630.0 4047200.0 4530000.0 4190300.0 6800300.0 4777200.0 True False 4175398.434441642 3499558.58916803 3647931.1809195024 3154964.1508654403 3230550.9945802754 3767426.5900840317 4310866.593719494 4503001.463912255 5124457.184351483 4472315.006033316 0.9336100942820166 0.7824937609374558 0.8156695527927506 0.7054431869421717 0.7223442423492407 0.8423884688358569 0.9639004828380776 1.0068614258694975 1.1458175860686028 1.0 22.092590376833755 2.0875698279101056 1.813594841320659 1.0579193274086027 0.7873078189515728 0.7386598775291466 0.06859558698408015 0.1799463340721324 1.1303595998520861 0.04017525193426844 0.021930063131426463 122.34038078574322 -2.0875698279101056 -0.27061150845702997 GSLAADKVVEEIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLAADKVVEEIRR 14 2 P51659-3;P51659;P51659-2;A0A2R8YD50;E7ER27;A0A2R8YDT8;A0A2R8YF45 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 160.81 2.6413e-06 216860000.0 179120.0 248400.0 212900.0 241230.0 222510.0 234850.0 263980.0 200240.0 326870.0 248900.0 False True 178155.63782210264 256667.843839029 242874.46944002667 271769.69326613116 250845.32957990316 218615.37227743526 251210.27889847022 215182.9255981174 246317.26833359874 233014.98890598884 0.7645672866734787 1.101507868846081 1.0423126451235105 1.1663185039816393 1.0765201447238575 0.9382030456660315 1.0780863500580316 0.9234724624729361 1.0570876555626934 1.0 17.83006323500228 -1.4913454639079835 10.211631866032931 0.9999998765681372 1.0193027994148691 0.0014466478758801138 0.10849358257596267 2.910491232058093e-07 1.4460776307623882e-08 0.10009875485821472 0.023593351959248634 0.0322592700478913 1.4913454639079835 0.019302922846731962 GSLAEAVGS(ph)PPPAATPTPTPPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLAEAVGSPPPAATPTPTPPTR 23 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 GSLAEAVGS(1)PPPAATPTPTPPTR;GSLAEAVGS(1)PPPAATPTPTPPTR 343.72 1.6465999999999991e-87 638790000.0 427290.0 500990.0 455980.0 502740.0 485470.0 481440.0 462430.0 398800.0 468390.0 511000.0 True False 424989.518116382 517665.1492951502 520178.02055079094 566386.8324529064 547291.7268938719 448159.18598785694 440060.49424585083 428560.48106536746 352961.5606044426 478387.54251089017 0.8883791494355383 1.0821041588543578 1.0873569529435425 1.183949794094007 1.144034236387778 0.936811990620878 0.9198828463135266 0.8958437312476872 0.7378151169068281 1.0 18.867820295846233 2.570441343006782 4.034295758280258 0.8864196048551881 1.0833502129267545 0.47917306786159597 0.09406352550737582 0.20146758360574063 5.884669783973972 0.032319048456357684 0.029825566806138102 371.9129861907535 -2.570441343006782 0.19693060807156637 GSLAS(ph)LDSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLASLDSLR 10 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 1 GSLAS(1)LDSLR;GSLAS(1)LDSLR 180.66 2.0695e-06 976790000.0 1220950.0 1626990.0 1430330.0 1632760.0 1303500.0 1744630.0 1631860.0 1274420.0 1873430.0 1473780.0 True False 1214376.540860297 1681143.378613775 1631708.031348769 1839467.2485893457 1469492.9985501932 1624027.834517272 1552920.6974894223 1369523.6917736335 1411748.2791758617 1379722.098633463 0.8801602453588795 1.2184652114210917 1.1826352806589704 1.333215761645939 1.0650644792930715 1.177068799670441 1.1255315103146515 0.9926083615896777 1.0232120515965635 1.0 20.395946280314813 1.8144870400497335 4.104738501996267 1.0055832583694135 1.1529313511539006 0.23735464860686395 0.11005694473493075 0.3022772095569914 8.728543534855175 0.05411168584836788 0.02923209675829595 65.23595733924064 -1.8144870400497335 0.14734809278448702 GSLAS(ph)LDSLRK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSLASLDSLRK 11 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 1 GSLAS(0.922)LDS(0.078)LRK;GS(0.001)LAS(0.996)LDS(0.003)LRK;GSLAS(1)LDSLRK;GSLAS(1)LDSLRK;GS(0.257)LAS(0.743)LDSLRK;GS(0.082)LAS(0.899)LDS(0.019)LRK 153.74 2.0308e-05 3127470000.0 3084690.0 3329560.0 3035960.0 3165490.0 2635350.0 3979150.0 3542880.0 3503770.0 5268210.0 3608890.0 True False 3068082.3717812807 3440382.3918384765 3463396.7789626275 3566240.7094349978 2970946.2015567697 3704080.726411562 3371497.3592840903 3765239.1091835545 3969930.235897292 3378567.5504738213 0.9081015329561792 1.0182961685510732 1.0251080457091672 1.0555481446374682 0.8793508364632563 1.0963465051607713 0.9979073405861785 1.1144483728482815 1.1750335538919552 1.0 21.687980269718274 2.0600625475997374 1.5869501146312208 1.104132653788587 0.9913426375155369 0.26894906580303546 0.07294082379227333 0.4803510878610797 2.2805034342482196 0.04373747869637516 0.02237875666528449 114.83189918337895 -2.0600625475997374 -0.11279001627305008 GSLDQDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSLDQDRR 8 1 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2;A0A2R8Y6Q7;A0A2R8Y7I7 A0A2R8Y430 GSS Glutathione synthetase 0 ;;; 111.74 0.0050917 551571000.0 411891.0 676550.0 798370.0 550707.0 277939.0 319064.0 554722.0 344038.0 1126280.0 474844.0 False True 409673.4246213924 699068.5577668884 910773.5564435596 620426.4497347384 313332.88417648023 297007.85667586763 527887.9776161731 369711.8625495661 848723.3853787916 444539.0493855986 0.9215690391825098 1.5725695160708093 2.0488043912055596 1.3956624296386007 0.704848954460897 0.6681254595886792 1.1874951780856413 0.8316746595390172 1.909221218140048 1.0 18.761950628881102 3.438109340478116 9.797888412215428 1.0216729779779632 1.5536866037035195 0.20858805464554053 0.41500303187177096 0.5147226867056021 124.48912846083006 0.11458089547805875 0.15547651584069092 2742.264493315081 -3.438109340478116 0.5320136257255563 GSLESPATDVFGSTEEGEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLESPATDVFGSTEEGEKR 20 1 O00232-2;O00232 O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 0 ; 216.04 1.8497e-24 502140000.0 468700.0 454440.0 347200.0 363350.0 380970.0 473330.0 451750.0 399400.0 641650.0 446110.0 False True 466176.5712774652 469565.7606852193 396082.7420835006 409350.0727448856 429484.2713138986 440609.8111989711 429897.12664741336 429205.2561121055 483523.9551694974 417638.87786601356 1.1162192889212375 1.124334408435665 0.9483857061089304 0.9801531764392223 1.028362765239699 1.0550019036789173 1.0293513114584425 1.0276946875855812 1.1577560921534251 1.0 18.671896492603633 -0.04511778729994863 7.7113411201619355 1.0000000016672503 1.045868879548369 0.05172225738382452 0.06199943384627486 4123469.347716218 534727.8500777994 0.06071748162244398 0.014726152367032107 0.9013266508922895 0.04511778729994863 0.04586887788111871 GSLLFTAGPLEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLLFTAGPLEEER 14 0 P53004 P53004 BLVRA Biliverdin reductase A 0 ; 199.12 4.9057000000000014e-08 377210000.0 235960.0 290820.0 256290.0 269640.0 253090.0 257700.0 273450.0 225680.0 306830.0 264060.0 False True 234689.61757762064 300499.7678955977 292373.4042873857 303776.39635318797 285319.5113180425 239885.80556054928 260222.17881955745 242521.38757981986 231215.85781135657 247207.46472686017 0.949362988843923 1.215577240871833 1.182704594339129 1.2288318101107136 1.1541702902592055 0.9703825320388257 1.052646930007058 0.9810439496549266 0.9353109869349101 1.0 17.915362782249588 2.743837471831945 23.825606790962077 0.991651855319651 1.1566141502578462 0.508730707155234 0.07736993112804108 181.95452025052384 821545.8246819086 0.02360088498618149 0.024333548475740267 554.4181914725054 -2.743837471831945 0.16496229493819514 GSLLGDFLTAYHGLEKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLLGDFLTAYHGLEKPR 18 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 0 ; 190.46 1.6541e-14 154027000.0 291920.0 317600.0 295950.0 299770.0 289538.0 324290.0 332510.0 292030.0 393400.0 342770.0 False True 290348.3351553611 328171.12400674616 337617.1875564859 337720.8512638897 326408.94807382126 301872.5955965481 316425.220988448 313822.76149829314 296451.8412899245 320894.1251398388 0.9048103795257502 1.0226772580013306 1.0521139563068023 1.052437002755093 1.017185802113327 0.9407233475059679 0.9860735868896219 0.9779635615377374 0.9238306907636191 1.0 18.29173785174988 2.7588593528855143 24.15457354278587 0.9672107141624389 1.0152723081226742 0.19755924757392074 0.043736518649588114 827.4192648250387 984589.7488259624 0.01353231902163385 0.014334565472042834 573.9305635754231 -2.7588593528855143 0.04806159396023535 GSLLPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLLPAK 7 0 F6QMI7;E9PHM6;F8W9J4;Q03001-8;Q03001-14;Q03001;A0A494C1D7;H0YC82;Q03001-10 F6QMI7 DST Dystonin 0 88.59100000000002 0.018495 1563500000.0 1734100.0 4990100.0 4478400.0 4889700.0 4533400.0 3072300.0 3354900.0 2159700.0 681400.0 2757200.0 False True 1724763.7982766237 5156192.461920849 5108919.79304939 5508735.518647758 5110701.618433023 2859919.1324162786 3192610.6700374195 2320867.7807343868 513478.1002922085 2581233.1354423207 0.668193730583374 1.9975694528023649 1.9792554662730706 2.134148769054826 1.979945766331274 1.1079662248044875 1.2368548296550257 0.8991314069492922 0.19892744023844974 1.0 21.299629019999323 2.1695824055411537 1.3317889993218661 0.6695971476403558 1.7810169551031816 0.4832591248589494 0.4549307870190298 0.3670235530642584 1.2463425084736819 0.2930376996032191 0.15895439958263072 147.76868398185653 -2.1695824055411537 1.1114198074628256 GSLLPTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSLLPTSPR 9 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;Q9H0E9-3 H7C128 BRD8 Bromodomain-containing protein 8 1 GSLLPT(0.129)S(0.871)PR;GSLLPT(0.017)S(0.983)PR;GSLLPT(0.009)S(0.991)PR;GSLLPT(0.007)S(0.993)PR;GSLLPT(0.035)S(0.965)PR;GSLLPT(0.003)S(0.997)PR 104.14 0.0034697 3199150000.0 3312890.0 4332570.0 4008160.0 4404280.0 4046170.0 4040610.0 3905810.0 3558570.0 4252520.0 3759750.0 True False 3295053.768336683 4476776.973356129 4572474.088448733 4961861.396418999 4561425.765971486 3761292.141272839 3716871.048656847 3824128.563452321 3204543.426848579 3519799.5361160836 0.9361481341555616 1.271884073914056 1.2990723027068245 1.4096999972601154 1.2959333959696988 1.0686097610613445 1.0559894137488925 1.0864620340486915 0.9104335045127675 1.0 21.74706183441211 2.652558350948397 4.706819641785556 1.0330594658794785 1.2563327238318556 0.44200031145686236 0.12233267715680805 0.22332028233730725 8.666699636794553 0.04153905200632184 0.039197471082215926 449.3226907237082 -2.652558350948397 0.22327325795237707 GSLLTILGSPS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 GSLLTILGSPS(1)PER;GSLLTILGS(0.004)PS(0.996)PER 140.1 1.1506e-05 23102000.0 68727.0 83526.0 74752.0 77075.0 77447.0 79039.0 86374.0 74661.0 89556.0 90275.0 True False 68356.98146828759 86306.11241746682 85276.43184396824 86832.68709732221 87309.4163856668 73575.21996779293 82195.75963927749 80232.58294087616 67486.12378891847 84513.57221168402 0.8088284482529212 1.0212100868401701 1.0090264748290778 1.0274407391019922 1.033081599804821 0.8705728327694702 0.9725746704138711 0.9493455410914934 0.7985240952764804 1.0 16.366895424969886 2.7414657007470202 24.973657066110093 0.9225154053314351 0.9864688506378673 0.12512393238326802 0.0802651136341172 541.0052993127954 4650780.20821868 0.0245854767574741 0.025023817111538296 551.3986528789897 -2.7414657007470202 0.06395344530643221 GSLQFEDKWDFMRPIVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLQFEDKWDFMRPIVLK 18 2 Q93034;E9PP19 Q93034 CUL5 Cullin-5 0 58.577 0.04651 65226000.0 101410.0 143340.0 127820.0 125530.0 128430.0 159260.0 162280.0 136780.0 150290.0 151110.0 False True 100864.01982771022 148110.98524914024 145815.94496864328 141422.08512911914 144784.79923575078 148250.73105771473 154429.8964301985 146987.21815476666 113253.04328282361 141466.03042822029 0.7129910942039793 1.0469720879337998 1.0307488273139194 0.9996893579400784 1.023459828465424 1.0479599279696832 1.0916394272373118 1.0390283639813291 0.8005670544370586 1.0 17.110096141513228 4.742028900912791 24.795842659226103 1.0169730214138193 0.7129909652068575 0.5846291228715057 0.07454652916472719 200.83638368978396 1435770.480223498 0.017350105760111312 0.12617143913069567 55211.41794962065 -4.742028900912791 -0.30398205620696184 GSLS(ph)PVTKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSLSPVTKPR 10 1 F5H4N6;Q9Y3R0-3;Q9Y3R0-2;Q9Y3R0;F5H4P8;H0YFK8;F5H4Q7 F5H4N6 GRIP1 Glutamate receptor-interacting protein 1 1 GSLS(0.995)PVT(0.005)KPR;GS(0.007)LS(0.992)PVTKPR 141.08 0.0037361 1167100000.0 1268230.0 1287080.0 1207570.0 1171230.0 1115830.0 1329110.0 1348320.0 1190480.0 1626510.0 1328740.0 True False 1261401.9905935994 1329919.6797437111 1377585.3596133986 1319507.5979110838 1257924.3364574315 1237231.7540884037 1283096.6105174099 1279319.6627349516 1225678.4046173755 1243938.6756084533 1.0140387266089337 1.069119970157051 1.1074383220214405 1.0607497168344469 1.0112430468826266 0.9946083181980261 1.0314789914300262 1.0284427100951679 0.9853206019322889 1.0 20.246483933750635 3.2627908439322897 5.731277148340708 1.0119847886507831 1.0669858753497048 0.5263059797336057 0.025035844175085472 0.1440844994069749 13.944368055309527 0.007307956880577227 0.009636652398223242 1831.4321928561615 -3.2627908439322897 0.055001086698921675 GSLTPHPAACDKDGQTDS(ph)AAEESSSQETSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSLTPHPAACDKDGQTDSAAEESSSQETSK 30 1 A0A5F9ZH11;P55201-3;P55201;P55201-2;P55201-4 A0A5F9ZH11 BRPF1 Peregrin 1 GSLTPHPAACDKDGQT(0.001)DS(0.999)AAEESSSQETSK 202.66 1.1259e-25 642740000.0 189970.0 175510.0 191340.0 176890.0 203790.0 298370.0 271360.0 227910.0 356950.0 257770.0 True False 188947.222627651 181351.74425196435 218279.00884290613 199284.25586305992 229741.4485420361 277744.3841874314 258233.28010413286 244917.80150353024 268984.45538494794 241318.89791200016 0.7829773145100011 0.751502455137585 0.9045251355428624 0.8258128873758214 0.9520242738130441 1.1509433641152889 1.0700914115657065 1.014913475996573 1.1146431452833685 1.0 17.880581373232772 3.0721120328673073 3.054537667898739 1.0663866122060162 0.8161727772531758 0.8227608278175682 0.05536704615816208 0.10384209735963155 1.9640884132798877 0.017351937660103196 0.020921763259666812 1180.6251565888087 -3.0721120328673073 -0.25021383495284033 GSNEEQVNGS(ph)PLER ddPTM_BT-474_Trastuzumab_2h_R1 2 GSNEEQVNGSPLER 14 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 GSNEEQVNGS(1)PLER;GSNEEQVNGS(1)PLER 260.25 1.9701e-24 651200000.0 477110.0 497300.0 482730.0 535730.0 480060.0 521950.0 545080.0 438210.0 518250.0 533530.0 True False 474541.2927719043 513852.3298758022 550694.1880356218 603553.3630703659 541192.7954614543 485868.82503813977 518712.3979921899 470911.4553852928 390534.2316942133 499479.6586219857 0.9500713083714283 1.028775288454127 1.1025357660308566 1.208364249978686 1.0835131844098536 0.9727499742003571 1.0385055508031407 0.9428040707092864 0.7818821546640319 1.0 18.930066399696255 1.8282493764318317 1.579947884824585 0.8888332888352517 1.0699920567766286 0.3951203822081968 0.08380274664132431 0.37352362139331785 1.770729028634513 0.06313166061639192 0.02665033146914626 67.3363197483355 -1.8282493764318317 0.18115876794137686 GSNMDFREPTEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 GSNMDFREPTEEER 14 1 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ; 156.96 4.9506e-06 1936130000.0 1370060.0 2366400.0 2188000.0 3022600.0 2429700.0 2325800.0 2601200.0 1919520.0 3033700.0 2631500.0 False True 1362683.749187976 2445164.1934809936 2496051.3815630693 3405260.850085843 2739107.8930398184 2165022.920344299 2475370.0184510257 2062764.3295250582 2286085.284497319 2463555.4170595002 0.5531370391555775 0.9925346824142246 1.013190677294508 1.3822546172516639 1.1118515435342704 0.878820466287083 1.0047957522326116 0.8373119253745765 0.9279617859077797 1.0 21.232310494401382 -0.49680818323797793 7.5275664956624855 0.9999460927285382 0.9745751300047718 0.0011458055432339576 0.19888875890759786 0.0 0.0 0.19715085556889894 0.046468902296499366 0.31856042109360183 0.49680818323797793 -0.025370962723766377 GSNPHLQTFTFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSNPHLQTFTFTR 13 0 Q9BSJ8-2;Q9BSJ8;F8VZB1 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 0 119.62 0.00023786 0.0 81829.0 118070.0 114730.0 99948.0 113100.0 108990.0 107160.0 81142.0 107850.0 100470.0 False True 81388.44175605668 121999.88857517776 130882.9867489631 112601.40655210058 127502.61460377969 101455.77783486339 101976.26140904646 87197.22807072724 81271.81261595938 94057.91858330533 0.8653013269050013 1.297071957499514 1.3915148104520567 1.197149673819027 1.3555755488130754 1.078652168397772 1.0841858181108697 0.9270588737672129 0.8640613553868776 1.0 16.521261786561755 2.14304946354687 1.647733898035689 0.9233392290354587 1.2301634214445691 0.41918126542088086 0.14249164282697613 0.3423086493267757 1.7954801454307039 0.08170145511483559 0.04564745848997464 139.01109475294828 -2.14304946354687 0.3068241924091104 GSNPLDGRDS(ph)PSAGGPVGQLEPIPIPAPAS(ph)PGTRPTLK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSNPLDGRDSPSAGGPVGQLEPIPIPAPASPGTRPTLK 38 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 GSNPLDGRDS(0.998)PS(0.002)AGGPVGQLEPIPIPAPAS(0.982)PGT(0.018)RPTLK;GS(0.001)NPLDGRDS(0.924)PS(0.075)AGGPVGQLEPIPIPAPAS(0.849)PGT(0.127)RPT(0.025)LK;GSNPLDGRDS(0.998)PS(0.002)AGGPVGQLEPIPIPAPAS(0.997)PGT(0.003)RPTLK 229.12 4.1851e-40 500110000.0 234958.0 249503.0 227781.0 228962.0 234942.0 287148.0 267986.0 256551.0 303071.0 281189.0 True False 233693.01223428815 257807.5565272513 259850.58489205586 257948.56572399705 264860.4710896658 267298.1346336847 255022.49337406436 275696.13835958147 228383.21299333707 263243.2772819855 0.8877454142312505 0.979350960788596 0.9871119504932488 0.9798866219390029 1.0061433432389155 1.0154034602272317 0.9687711534638165 1.047305523644034 0.8675747215709276 1.0 18.00603716255092 4.748580337073505 3.4508087480846563 0.9894883493255942 0.8738325939395307 0.288635966556835 0.04449078233207799 0.3635634710352485 7.311656964768764 0.010073431548941079 0.11167949779818673 56050.609184405 -4.748580337073505 -0.11565575538606343 GSNPLDGRDS(ph)PSAGGPVGQLEPIPIPAPASPGTRPTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSNPLDGRDSPSAGGPVGQLEPIPIPAPASPGTRPTLK 38 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 GSNPLDGRDS(0.946)PS(0.054)AGGPVGQLEPIPIPAPASPGTRPTLK;GSNPLDGRDS(0.988)PS(0.012)AGGPVGQLEPIPIPAPASPGTRPTLK;GS(0.012)NPLDGRDS(0.848)PS(0.14)AGGPVGQLEPIPIPAPASPGTRPTLK;GSNPLDGRDS(0.989)PS(0.011)AGGPVGQLEPIPIPAPASPGTRPTLK 248.18 8.648600000000001e-51 2057100000.0 1383731.0 1353038.0 1288336.0 1223661.0 1341278.0 1653045.0 1650022.0 1642587.0 1976070.0 1869816.0 True False 1376281.1460429677 1398073.051901256 1469722.5103827438 1378576.3571352095 1512081.8029224426 1538773.8899993717 1570204.1321638455 1765165.1828277784 1489094.0264813986 1750482.7420499853 0.7862294857195843 0.798678569240835 0.8396098259509579 0.7875406732206698 0.8638084607173264 0.8790568755892549 0.8970120609843796 1.0083876524030158 0.8506762110305212 1.0 20.739321407679203 2.554413464046277 0.9169579248358923 0.9596238723789322 0.7997451316773553 0.6552574790932119 0.04436359579247648 0.3291566945917442 0.5676455228847643 0.02788273174059365 0.02139006292918769 358.4375201916985 -2.554413464046277 -0.15987874070157693 GSNTIASAAADKIPGLLGVFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSNTIASAAADKIPGLLGVFQK 22 1 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 183.86 3.7482999999999997e-17 101220000.0 214640.0 246240.0 224920.0 192680.0 215790.0 295010.0 275910.0 263200.0 334600.0 280800.0 False True 213484.40208874582 254435.94954477643 256586.78096031342 217073.2682440747 243269.5774124637 274616.6530788421 262563.1792214447 282841.32050251897 252142.31341029177 262879.10359502485 0.8121010729617618 0.9678819885841691 0.9760638158428713 0.825753227531102 0.9254047738508331 1.044649990521496 0.9987982142009019 1.0759368722522984 0.959156927888519 1.0 18.004039940325807 2.820231841901413 5.111846194521152 1.023405959069018 0.9033387886856116 0.5011989732391329 0.05698677290217129 0.18316495197455016 8.341444744617206 0.01741636238030319 0.018454490974646395 661.0462439200948 -2.820231841901413 -0.12006717038340653 GSNYWR ddPTM_BT-474_Trastuzumab_2h_R1 5 GSNYWR 6 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;; 132.96 0.034132 11054100000.0 7918080.0 10730600.0 10567300.0 10174200.0 9292200.0 9707100.0 10899400.0 8798940.0 11209100.0 8926600.0 False True 7875449.937061391 11087761.534215325 12055083.98738183 11462252.676815765 10475506.590815581 9036071.025055515 10372154.38224862 9455561.582911985 8446767.499244783 8356896.745553238 0.9423892835880701 1.326779769071001 1.4425311637117477 1.371591994709628 1.253516336239247 1.081271110578657 1.2411490410920434 1.1314680402080297 1.010754082098641 1.0 22.994535879937377 1.6419191902217096 0.8104772665279774 0.9905203115550822 1.2752073477844346 0.3199714891934099 0.13447519684550613 0.6939213667031304 0.8999536091413538 0.12588035261442657 0.054215779488966095 43.84491073491735 -1.6419191902217096 0.2846870362293523 GSPDEENEEIEDLSDAAFAALHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSPDEENEEIEDLSDAAFAALHAK 24 0 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A3B3IT55;A0A0G2JQF4;A0A1W2PPV8;A0A1W2PS83;A0A1W2PQT4;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5;Q7Z3B3-4 KANSL1 KAT8 regulatory NSL complex subunit 1 0 ;;; 243.23 1.1409999999999996e-37 47600000.0 59801.0 61557.0 56667.6 55446.7 56452.0 63371.0 65994.0 58998.9 77194.0 63082.0 False True 59479.038060515675 63605.88753300772 64645.90551639102 62466.246534921724 63640.82758278136 58990.31192928824 62801.61809843799 63401.697508343765 58170.57304660509 59056.052752782685 1.0071624378538075 1.0770426496208834 1.0946533420885456 1.0577450341358676 1.077634291766692 0.9988868063402468 1.0634239027341497 1.0735850865914216 0.9850061142778311 1.0 15.849797310957069 2.779102377807979 24.992162776802413 1.035655751010839 1.0651196836757157 0.20308236031400473 0.0346162070670692 1030.40767457602 635198.4162006228 0.010702696647632046 0.011351798161503572 601.3154710463873 -2.779102377807979 0.02946393266487668 GSPHSEGGKRS(ph)PEPNK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSPHSEGGKRSPEPNK 16 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHS(0.001)EGGKRS(0.999)PEPNK 169.43 2.9364000000000003e-09 3154873000.0 1060536.0 1029466.0 1037427.0 1108259.0 1033383.0 1401060.0 1513980.0 1236810.0 2025990.0 1448350.0 True False 1054826.1920126255 1063731.1534846607 1183487.7041228667 1248564.4757676446 1164978.1997090878 1304208.0199404869 1440743.003434754 1329107.0425939248 1526711.9113751273 1355915.0630051785 0.7779441506275212 0.7845116427330361 0.8728332153046867 0.9208279410956556 0.8591822832376327 0.9618655736812225 1.0625613969075374 0.980228835018738 1.1259642679913915 1.0 20.370835377577823 3.2240369461092877 0.5540328524302068 1.0566269654605347 0.7569115664675147 0.7926679568109449 0.049222186006423266 0.47236082393648726 0.2948201223346722 0.03664224975489835 0.07403254475386037 1675.085372091728 -3.2240369461092877 -0.29971539899302 GSPQQIDHAK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSPQQIDHAK 10 0 A0A087WTP3;Q92945;M0R3J3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ;;;;; 180.66 1.9729e-06 3684640000.0 4609300.0 4650220.0 4238100.0 4183940.0 4250050.0 4875050.0 4989210.0 4325480.0 5850300.0 4809160.0 False True 4584484.0409413725 4804999.761582644 4834787.641774425 4713626.375010971 4791268.675480051 4538049.268133315 4747862.851666942 4648269.281942395 4408571.955003676 4502235.291470981 1.0182684253810996 1.0672475893663795 1.0738638318022673 1.0469524735725049 1.0641977518493122 1.007954710125919 1.0545568021869662 1.0324358859582616 0.9791962591016199 1.0 22.102210024820838 1.3800693968004647 3.890665177262077 0.9900256239489452 1.048139114857414 0.5583073398681748 0.020248303115357687 0.16005478372113935 3.878593319980731 0.01519955845197442 0.005142900719392465 23.992162640479716 -1.3800693968004647 0.058113490908468735 GSPS(ph)GGSTAEASDTLSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSGGSTAEASDTLSIR 18 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 GS(0.285)PS(0.715)GGSTAEASDTLSIR 381.56 1.1567999999999999e-108 579320000.0 99497.0 139020.0 119890.0 133840.0 136750.0 140710.0 147140.0 122870.0 121330.0 144530.0 True False 98961.31920715595 143647.19666063524 136769.46989743915 150784.13027707563 154164.30191924723 130983.04889571176 140022.27607061501 132039.18332121786 91429.84723870496 135305.97166164155 0.7313891470705198 1.0616471312873943 1.0108162131931424 1.114393758275061 1.1393754468188924 0.9680507614494644 1.034856587267024 0.9758562885266223 0.675726622527369 1.0 17.045865987783174 -1.6152848753767393 6.099759916891301 1.0000722012120862 0.9839595772914638 0.0 0.14478689131513425 0.000138504677319913 8.735537178911269e-06 0.13658113384759263 0.03204824125170594 0.024250188826207598 1.6152848753767393 -0.016112623920622404 GSPSHS(ph)KSPAY(ph)TPQNLDSESESGSSIAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSHSKSPAYTPQNLDSESESGSSIAEK 29 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 GS(0.095)PS(0.141)HS(0.698)KS(0.34)PAY(0.652)T(0.074)PQNLDSESESGSSIAEK 144.24 1.5537000000000002e-07 305200000.0 256140.0 189000.0 193210.0 181190.0 179930.0 266290.0 257260.0 255640.0 382170.0 307430.0 True False 254760.9706998295 195290.7507470875 220412.28858857474 204128.63542217054 202843.01897133593 247881.99907923432 244815.35097136357 274717.1549136169 287989.3243156344 287809.554195935 0.885172041670282 0.6785415838354603 0.7658268649362573 0.7092489892924257 0.7047820894550444 0.8612709184438025 0.8506157888167192 0.9545101992222083 1.0006246148436648 1.0 18.134754959365292 2.0012697276137676 1.1642300815298579 1.003475967806718 0.7456432679208279 0.7489119911169402 0.05801743238080725 0.22137485566691398 0.5545861631887617 0.04194942381705334 0.01952052329068221 100.29279339256298 -2.0012697276137676 -0.2578326998858901 GSPSSYNSSSS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSSYNSSSSSPR 14 0 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 GSPSSYNSS(0.013)S(0.084)S(0.569)S(0.334)PR 106.17 0.0010039 58797000.0 68469.0 82229.0 79563.0 83107.0 81969.0 87793.0 85908.0 77420.0 91896.0 85370.0 True False 68100.370511621 84965.94255651989 90764.77882600667 93628.33767884738 92407.26628167302 81724.07655249238 81752.30183957046 83197.4735307942 69249.46214331198 79921.61351106588 0.8520895352318166 1.0631159560455519 1.1356725025757828 1.1715020951858497 1.156223732506081 1.0225528860372286 1.0229060481649448 1.0409884119678683 0.866467268378206 1.0 16.28629808906761 1.407519313385532 4.393319193714138 0.933884579739505 1.0675405552023831 0.226498664066889 0.09124712314384617 0.30415862564229706 9.68865878161569 0.06757637003307307 0.024042520617544694 25.557555548103515 -1.407519313385532 0.1336559754628781 GSPSSYNSSSSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSPSSYNSSSSSPR 14 0 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 GSPSSYNSSSS(0.028)S(0.972)PR;GSPSSYNSSSS(0.001)S(0.999)PR;GSPSSYNSSSS(0.039)S(0.961)PR;GSPSSYNSSS(0.001)S(0.045)S(0.954)PR 318.02 5.7713999999999995e-56 2945318000.0 2135808.0 2500524.0 2458096.0 2676538.0 2494101.0 2787583.0 2728688.0 2253891.0 2506863.0 2553262.0 True False 2124309.047038579 2583752.429741324 2804174.5506465556 3015387.436368373 2811709.978655187 2594883.9484745525 2596690.936839569 2422087.7914465964 1889080.2038932 2390310.6332024257 0.8887167289184208 1.0809274718741195 1.1731423153524003 1.2615044231002308 1.176294804365318 1.085584405821786 1.08634036964503 1.0132941542420355 0.7903074092768851 1.0 21.188766685379477 1.5466600354624702 3.0089549650080456 0.8946656068573449 1.1172157254236295 0.39569199877602157 0.10324048437797036 0.21661885757646335 4.341362419974482 0.07455678052578955 0.028315864725276474 35.209514401766256 -1.5466600354624702 0.2225501185662846 GSPSVAAS(ph)SPPAIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSVAASSPPAIPK 15 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 GSPSVAAS(0.53)S(0.47)PPAIPK 244.44 5.1687e-18 227760000.0 308490.0 301780.0 279620.0 256600.0 259130.0 337490.0 305080.0 278040.0 385610.0 336710.0 True False 306829.1241164614 311824.56487013795 318988.06549938995 289085.5336902092 292128.6695161575 314160.1106660058 290322.1148812235 298788.75665851205 290581.5824092728 315220.879528066 0.9733781739833719 0.9892256037638977 1.0119509404864424 0.9170887858793318 0.9267427651160636 0.9966348394698716 0.9210116896947949 0.9478710836218864 0.9218348189508193 1.0 18.266003573298175 3.7439861898810665 24.984023239930487 0.9449278767403708 0.9912889756376838 0.31893323805573826 0.02945873426126178 488.4224608034578 2249110.0729590068 0.007265198407676394 0.01265959938044284 5546.080767096996 -3.7439861898810665 0.04636109889731299 GSPSVAASS(ph)PPAIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPSVAASSPPAIPK 15 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 GSPSVAAS(0.022)S(0.978)PPAIPK 216.98 2.2382e-12 206050000.0 336320.0 341480.0 267040.0 266080.0 250360.0 351230.0 328710.0 311280.0 405580.0 355220.0 True False 334509.2904886644 352845.955370981 304636.9108467107 299765.70071820315 282241.8620000199 326950.2968064868 312809.0415058571 334509.29424781253 305630.2434935632 332549.5554808576 1.005893061576862 1.061032707924614 0.9160647062246529 0.9014166333337902 0.8487212126683069 0.9831626337125171 0.9406388802821994 1.005893072880886 0.919051727648922 1.0 18.343209816913358 4.23725469920874 24.999892808919313 0.9401279326559856 1.0334628973802749 0.3898994856320498 0.047073521075657515 33.83779465715862 647833.5901393348 0.0122929893273132 0.02908241653492202 17268.503351260373 -4.23725469920874 0.09333496472428926 GSPT(ph)SAYPER ddPTM_BT-474_Trastuzumab_2h_R1 1 GSPTSAYPER 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 GS(0.128)PT(0.871)S(0.001)AYPER 206.27 1.7162e-06 6540300000.0 406740.0 514580.0 498120.0 556970.0 480070.0 486770.0 497190.0 459210.0 520430.0 460220.0 True False 404550.1570330619 531707.4842298209 568250.9662633437 627482.3448925794 541204.0689021791 453120.73563332815 473139.0202497563 493478.5820211313 392176.999904717 430848.3655858345 0.9389618003609824 1.234094235234816 1.3189117370578387 1.4563878965616526 1.2561358290550584 1.051694219652451 1.0981567020833842 1.1453648694944847 0.9102436755712532 1.0 18.71682068549403 2.7408430886817428 22.750573385819962 1.062612521996013 1.2568260463110676 0.347594003054581 0.1343880953854609 72.19131326582419 719567.8592259458 0.043773516942389026 0.044385635404885854 550.6087246156455 -2.7408430886817428 0.19421352431505468 GSQQYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSQQYR 6 0 Q13509;A0A0B4J269;Q13509-2;Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q13509;Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;K7ESM5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 ; 118.01 0.05172 496920000.0 573070.0 714670.0 627810.0 598250.0 600820.0 381950.0 620880.0 577680.0 722230.0 643250.0 False True 569984.6547940628 738457.3589228619 716200.1909776558 673988.3886600459 677330.865660857 355546.69551358855 590845.6624080704 620789.4149996025 544246.0938861785 602197.2342859675 0.9465082573318365 1.226271588242114 1.1893116577110536 1.1192153505307973 1.1247658193979855 0.5904156898614198 0.981149744250558 1.0308739058486045 0.9037671761005305 1.0 19.19987655664241 2.940158550354813 24.99999774690375 0.914135428487036 1.131469834124027 0.4032351397474484 0.13307422431968507 260.29608472981823 108743.70182163261 0.04103980095360878 0.04352934359058058 871.2816156321597 -2.940158550354813 0.21733440563699102 GSQS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 5 GSQSPKR 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 GS(0.005)QS(0.995)PKR;GS(0.004)QS(0.996)PKR;GS(0.001)QS(0.999)PKR;GS(0.001)QS(0.999)PKR;GS(0.003)QS(0.997)PKR 112.3 0.0039117 846577000.0 1226708.0 1046004.0 1015573.0 1126540.0 1118566.0 1621434.0 1317252.0 1182789.0 1627931.0 1260056.0 True False 1220103.5404280713 1080819.6108172294 1158556.8508812385 1269159.8484932526 1261008.749839888 1509348.0840250833 1253531.4883686963 1271054.721260843 1226749.2182078008 1179638.147291783 1.0343032252976803 0.9162297890235056 0.982129014343133 1.0758891202416554 1.068979290585775 1.2795009109278548 1.0626406845578518 1.077495437205837 1.0399368832079359 1.0 20.16991295165064 3.701996736523105 3.1817801947725832 1.09635607286514 0.9687781807750017 0.30704432160178197 0.07437550143626522 0.27834729714022993 5.724714305311214 0.02043961157358216 0.03586955673067827 5034.968252804043 -3.701996736523105 -0.12757789209013837 GSRPAS(ph)PAAK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSRPASPAAK 10 1 A0A590UJ53;Q9P2N6-8;Q9P2N6-6;Q9P2N6-2;Q9P2N6-5;Q9P2N6-4;Q9P2N6-3;Q9P2N6 A0A590UJ53 KANSL3 KAT8 regulatory NSL complex subunit 3 1 GS(0.056)RPAS(0.944)PAAK;GS(0.001)RPAS(0.999)PAAK;GS(0.019)RPAS(0.981)PAAK;GS(0.006)RPAS(0.994)PAAK;GS(0.041)RPAS(0.959)PAAK;GS(0.05)RPAS(0.95)PAAK 78.615 0.017849 3261020000.0 2464880.0 2354700.0 2124120.0 2114530.0 2185830.0 2188060.0 2530030.0 2457010.0 3492350.0 2674610.0 True False 2451609.3599539152 2433074.766053792 2423177.6328179874 2382229.2811923563 2464182.494070557 2036804.5623392137 2407642.7832468245 2640364.562643975 2631707.137592449 2503914.099951175 0.9791108089537578 0.9717085606495989 0.9677558958053865 0.9514021592189638 0.9841322009084126 0.8134482578211969 0.9615516695615766 1.0544948657365925 1.0510373090050356 1.0 21.25575363890294 1.8048977888461855 5.6063787077813965 1.0392240063010216 0.9445567610690039 0.41239742212971375 0.048300591168535814 0.20258165261754627 11.155624330041725 0.02312245498969985 0.013222375908898125 63.81132886314147 -1.8048977888461855 -0.09466724523201775 GSRPIDTSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GSRPIDTSR 9 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;;;; 94.309 0.008034 1486260000.0 835338.0 1139367.0 1037076.0 1048606.0 1001685.0 943734.0 974832.0 895356.0 1099803.0 994691.0 False True 830840.6330227768 1177290.1418331056 1183087.286373813 1181359.412084005 1129243.6472978517 878495.889890879 927675.6519401239 962172.0112456443 828771.2872551676 931208.9687821905 0.8922171723811116 1.2642598829054807 1.2704852788531686 1.268629761619408 1.2126640583956634 0.9433928573945672 0.9962056670838476 1.0332503696822706 0.8899949582090172 1.0 19.828745427823986 2.7420490013958005 24.907929573819423 0.9814425514386852 1.196007973544191 0.4710922069578499 0.11004645342302519 255.25712347145813 1822601.6266879423 0.034075127082102766 0.0348478960168172 552.1397336281838 -2.7420490013958005 0.2145654221055059 GSRPPLILQSQSLPCS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 GSRPPLILQSQSLPCS(0.5)S(0.5)PR 148.95 5.473499999999999e-08 379700000.0 125530.0 141890.0 136810.0 149500.0 145570.0 148900.0 142320.0 110140.0 190040.0 134690.0 True False 124854.16042769412 146612.7228756837 156071.6588261626 168426.6846714196 164107.47663901147 138606.89347289785 135435.43788480322 118359.20607958751 143207.18840553454 126093.96888608957 0.9901675831972943 1.1627258953846582 1.2377408705975002 1.3357235572747532 1.3014696744716032 1.0992349173980889 1.0740833925780584 0.9386587409784091 1.1357179861227515 1.0 16.944139747198793 2.4229052974317034 2.97108863343479 1.0223392602878132 1.2117015136444356 0.38289754570409396 0.0998350931591545 0.2620919740281517 4.739923135553252 0.0395851178326348 0.032771186058181676 264.7922667718332 -2.4229052974317034 0.18936225335662238 GSRPPLILQSQSLPCSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 GSRPPLILQSQSLPCS(0.23)S(0.77)PR;GSRPPLILQSQSLPCS(0.045)S(0.955)PR;GSRPPLILQSQSLPCS(0.251)S(0.749)PR 156.2 1.1103e-08 2987010000.0 751840.0 844660.0 892880.0 922990.0 834250.0 945100.0 987640.0 843440.0 1011550.0 927110.0 True False 747792.1769772769 872773.9974922473 1018589.7429479146 1039840.4393637031 940486.7925128486 879767.4615260963 939864.0800488116 906381.775701537 762267.0565755557 867941.0460611953 0.8615702418624327 1.0055682945898046 1.173570195314968 1.1980542273955181 1.0835837258542769 1.0136258280658237 1.082866266452094 1.0442895630006088 0.8782475031395289 1.0 19.727237526964124 1.370330035682641 6.2397029309684156 0.9407082431605324 1.0659062534677197 0.20832603871654454 0.09234502371710045 0.32200799425728077 15.733584157553675 0.06656597320830966 0.02405651856063056 23.460109544837653 -1.370330035682641 0.12519801030718736 GSS(ph)FEMTDDDSAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSSFEMTDDDSAIR 14 0 H7BXY3;Q7L2E3-3;Q7L2E3;Q7L2E3-2 H7BXY3 DHX30 Putative ATP-dependent RNA helicase DHX30 1 GS(0.003)S(0.997)FEMTDDDSAIR;GS(0.04)S(0.96)FEMTDDDSAIR 235.81 3.1617e-17 696370000.0 747480.0 926560.0 755920.0 991530.0 808630.0 802810.0 849810.0 752370.0 888560.0 974890.0 True False 743455.6507328346 957399.9894826512 862346.9654255753 1117057.59633614 911604.2373744857 747313.634311466 808701.4437105434 808515.6698574487 669586.2940939897 912671.6855546793 0.8145926541820973 1.0490080985702852 0.9448599962882392 1.22394242531721 0.9988304138310757 0.8188197860628093 0.8860814425496858 0.8858778930630138 0.7336551628497671 1.0 19.799736448768886 2.8012668387313604 6.685154382566423 0.8622145792630621 1.0182292012759417 0.2767962758174012 0.11352958759792293 0.30259676486731235 26.80469647961592 0.034007214482944324 0.03600604857504907 632.800536556373 -2.8012668387313604 0.15601462201287963 GSS(ph)FQSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSSFQSGR 8 0 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 GS(0.001)S(0.999)FQSGR;GS(0.06)S(0.94)FQSGR 144.65 0.00061049 300786000.0 439580.0 540280.0 468390.0 571910.0 484490.0 405330.0 465830.0 487880.0 516910.0 581120.0 True False 437213.3501219296 558262.8931938438 534335.2406811361 644313.7473607459 546186.9297027871 377310.49114418885 443296.0232565898 524288.0830044412 389524.45673913276 544032.4240781368 0.8036531110490112 1.0261573915191187 0.9821753576297726 1.1843296811812933 1.0039602522373572 0.693544124292852 0.8148338290824395 0.9637074185290475 0.7159949287934118 1.0 19.0533331124248 2.8814983426275327 11.38637137618779 0.8442753685443646 1.011549376524407 0.299015337017308 0.12357520850938795 0.6565943322002861 59.66087802145919 0.03762185574056155 0.03991370399934957 761.199234080345 -2.8814983426275327 0.16727400798004244 GSS(ph)GEGLPFAEEGNLTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSGEGLPFAEEGNLTIK 18 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 GS(0.04)S(0.96)GEGLPFAEEGNLTIK 400.14 1.396499999999999e-127 93393000.0 168380.0 172780.0 150900.0 146610.0 146340.0 189100.0 180610.0 176620.0 197730.0 173060.0 True False 167473.46078877678 178530.87785228423 172145.40835368712 165170.81096773816 164975.53157486382 176027.962093519 171873.2043027984 189800.28125818746 149002.09094625514 162015.16263587968 1.0336900452037587 1.1019393181953143 1.0625265287087642 1.019477487665464 1.018272172127725 1.0864906668589551 1.0608464140425804 1.171497026391001 0.9196799146579218 1.0 17.30576931245992 1.2180511403554704 24.99999881722855 0.959839918379922 1.0719200300967768 0.47021988590881714 0.04642784095832899 247.70888603141955 301936.3649117468 0.04668993432585904 0.011725729992604789 16.52156336477566 -1.2180511403554704 0.11208011171685484 GSS(ph)GSPAHAESYSSGGGGQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 GS(0.081)S(0.566)GS(0.353)PAHAESYSSGGGGQQK 342.25 5.7215999999999995e-81 468400000.0 342490.0 380290.0 381730.0 362160.0 387640.0 471100.0 435610.0 451600.0 497810.0 469540.0 True False 340646.0718942162 392947.72275984 435474.26594335947 408009.4188668982 437003.6562777112 438533.96585011604 414537.8801082008 485300.68517833494 375131.3958122456 439573.5552065814 0.7749466906263881 0.8939293961284155 0.9906743951844522 0.9281937323894534 0.9941536543806361 0.9976350047809932 0.9430455385638136 1.1040261167445882 0.8533984616885093 1.0 18.745745070642275 5.645895182656066 0.8439449977170366 0.9909879349281164 1.4513107072141679e-15 0.4972336594389508 0.061692477993564296 6.979465966233144 1.2358177218404707 0.019414511704343974 9.228907756056305 442481.56617055123 -5.645895182656066 -0.990987934928115 GSS(ph)LSGTDDGAQEVVK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSLSGTDDGAQEVVK 16 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 GS(0.017)S(0.983)LSGTDDGAQEVVK;GS(0.002)S(0.998)LSGTDDGAQEVVK;GSS(1)LSGTDDGAQEVVK;GS(0.001)S(0.999)LSGTDDGAQEVVK 417.43 1.492899999999999e-140 4447170000.0 7852070.0 7250250.0 6852690.0 5876720.0 7198090.0 8470010.0 7615450.0 7376610.0 8697160.0 7509550.0 True False 7809795.327566988 7491570.188381316 7817489.187350752 6620712.149446319 8114724.095077998 7884498.1449589 7247061.589655873 7927090.095866592 6553861.453973259 7030284.089750793 1.1108790523775016 1.0656141476989551 1.111973440553789 0.9417417653290036 1.1542526577138146 1.1215049127891483 1.0308348136629517 1.1275632669557722 0.9322328045786806 1.0 22.74515155827967 1.2350654649026018 24.99998554946592 0.9661163723657609 1.0820555084581462 0.381563556355798 0.05953449413677958 92.74984911050616 663365.7843734709 0.04726444919949705 0.013641201789367499 17.181673616244233 -1.2350654649026018 0.11593913609238538 GSS(ph)LSGTDDGAQEVVKDILEDVVTSAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSLSGTDDGAQEVVKDILEDVVTSAIK 28 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 GS(0.14)S(0.836)LS(0.024)GTDDGAQEVVKDILEDVVTSAIK 205.58 1.6842e-25 4812200000.0 114680.0 118830.0 113400.0 108920.0 124720.0 165000.0 131170.0 161570.0 208690.0 134960.0 True False 114062.5756221458 122785.18471574812 129365.73430953028 122709.26083218094 140602.35272664388 153593.93836822116 124824.8059819395 173627.17383583603 157261.1458027312 126346.73725493072 0.9027742077106504 0.971811282059493 1.0238945391087393 0.9712103652078453 1.1128293122674746 1.2156541728364032 0.9879543286510011 1.3742117731580772 1.2446791204859073 1.0 16.94702888342145 3.1339027194153815 0.9297429327548209 1.2068121095264326 0.9413101399896027 0.391028333040498 0.11203796666896353 0.5138633969150167 0.9747323190103853 0.05334438162489654 0.0783659793437673 1361.1397573334582 -3.1339027194153815 -0.2655019695368299 GSS(ph)PGPRPVEGTPASR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSPGPRPVEGTPASR 16 1 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 GS(0.163)S(0.837)PGPRPVEGTPASR;GS(0.019)S(0.981)PGPRPVEGTPASR;GS(0.03)S(0.97)PGPRPVEGTPASR;GS(0.159)S(0.841)PGPRPVEGTPASR 148.52 5.5958e-07 6420700000.0 3838000.0 4635000.0 4054350.0 4277400.0 4220620.0 4641400.0 4901400.0 3963310.0 4850200.0 4988900.0 True False 3817336.6344418833 4789273.1730833305 4625167.238958062 4818918.401428303 4758090.939425323 4320550.94268038 4664300.556833715 4259072.317480394 3654933.199350261 4670504.130787823 0.817328606836704 1.0254295979555152 0.9902929340045109 1.0317769273903725 1.0187531808526045 0.9250716457350798 0.9986717549582679 0.9119084788737722 0.7825564643561818 1.0 22.155146851107858 1.5813871480574047 4.973275270824798 0.8783603628564004 0.9770401049047022 0.15750585179683085 0.07750889004267536 0.21313012516300928 11.388685082161764 0.04162136499137995 0.018909769194226086 38.140567267954964 -1.5813871480574047 0.09867974204830177 GSS(ph)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 GS(0.124)S(0.876)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 378.04 5.014099999999997e-162 2779300000.0 264460.0 229740.0 219180.0 202090.0 227970.0 330590.0 298550.0 277250.0 445680.0 293120.0 True False 263036.1767442682 237386.75701923724 250038.63885328764 227674.57327924567 257000.62821594736 307737.091425153 284107.9959282461 297939.8028469739 335848.13580603333 274412.83064734255 0.9585418295630103 0.8650716384479529 0.911176923700849 0.8296790377554837 0.9365474187547294 1.1214384207152348 1.0353305829688524 1.0857356856970972 1.2238791277133956 1.0 18.06598841323083 2.844079571196781 4.2711566059641015 1.0924515367640537 0.890068306706332 0.7029576062151787 0.06313985323266803 0.12362246202080791 3.8420930482137767 0.019067381310020403 0.020288602306083488 698.3603455556191 -2.844079571196781 -0.20238323005772174 GSS(ph)PSIRPIQGSQGS(ph)SSPVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 2 GS(0.08)S(0.919)PSIRPIQGS(0.007)QGS(0.496)S(0.273)S(0.224)PVEK 146.53 6.1485e-08 339300000.0 222150.0 191920.0 170610.0 163540.0 180470.0 225970.0 215680.0 200220.0 282380.0 222290.0 True False 220953.96908318528 198307.94118191002 194630.40503129616 184244.14723186614 203451.78477050486 210349.22577616357 205246.73442238872 215161.4330965591 212791.23269814195 208103.261887956 1.061751589468829 0.9529304797186704 0.9352587905906362 0.8853496363313337 0.9776482258122627 1.0107925453346176 0.9862735094123356 1.0339166774445048 1.0225271375741816 1.0 17.666940053026142 2.867314036966104 4.1445931147631265 1.012385699295037 0.9543325924027117 0.24307157400622847 0.042660655617266986 0.3156000054484992 9.114358729881415 0.013767890021036712 0.014735602217236176 736.7396390345115 -2.867314036966104 -0.058053106892325346 GSS(ph)PSIRPIQGSQGSSS(ph)PVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 2 GS(0.023)S(0.976)PSIRPIQGS(0.013)QGS(0.205)S(0.168)S(0.614)PVEK 142.65 8.2157e-08 357690000.0 242920.0 232780.0 202090.0 188130.0 211590.0 289160.0 228640.0 237200.0 321060.0 260360.0 True False 241612.14571094923 240527.9415815187 230542.51540223105 211947.2387105964 238534.73230781386 269171.04980942374 217579.80971038085 254901.06847719417 241939.06498358757 243743.60189458955 0.9912553348392624 0.9868072011405596 0.9458402748226085 0.8695499576733754 0.9786297176775605 1.1043204733055134 0.8926585478312428 1.0457754234198517 0.9925965773174125 1.0 17.89500482402278 3.001496755029541 24.999894590478675 1.0071214836280546 0.9475740913809527 0.18459079638767728 0.05817497937390026 83.83056668432849 1400148.617875254 0.016564400058954227 0.019662646089231888 1003.4523515038716 -3.001496755029541 -0.05954739224710193 GSS(ph)PTPPCS(ph)PVQPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPTPPCSPVQPSK 15 0 E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;H0YBY0 E7EPX0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 GS(0.008)S(0.648)PT(0.344)PPCS(1)PVQPSK 196.97 1.2661e-08 899990000.0 521420.0 507190.0 449380.0 479290.0 462540.0 569070.0 497670.0 443270.0 534510.0 479710.0 True False 518612.73265520757 524071.51254717045 512648.7979190188 539968.0648572894 521441.72731063 529731.5303466893 473595.8008159774 476349.05827945186 402787.17256705073 449094.4970996065 1.1547964537632318 1.1669515345473818 1.1415165432439407 1.2023484330014573 1.1610957842464442 1.179554712355333 1.0545571229988522 1.0606878092603313 0.8968873481380355 1.0 18.77665951885279 1.7754220869709205 1.4409920360074993 0.9577117482984764 1.16804317251673 0.8254873072615972 0.03841844297076803 0.1441549761682981 0.570353640652049 0.027845742224687896 0.011131462718467152 59.62413437191179 -1.7754220869709205 0.21033142421825357 GSS(ph)PTPPCSPVQPSK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSPTPPCSPVQPSK 15 0 E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;H0YBY0 E7EPX0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 GSS(1)PTPPCSPVQPSK;GS(0.03)S(0.969)PT(0.001)PPCSPVQPSK;GS(0.005)S(0.995)PTPPCSPVQPSK;GSS(0.999)PTPPCSPVQPSK 335.22 5.293399999999998e-69 2590630000.0 1710970.0 1722850.0 1535500.0 1514020.0 1559200.0 2003690.0 2040900.0 1920450.0 2358650.0 2109450.0 True False 1701758.327626639 1780194.0207651802 1751685.0531947422 1705694.776764032 1757754.8778975534 1865179.626478917 1942173.8700048833 2063763.7308475056 1777392.31179075 1974823.0950089935 0.861726972875456 0.9014448054938679 0.8870085921224072 0.8637202902249146 0.8900821963951907 0.9444793466274622 0.9834672659608725 1.045037267420709 0.900026091594121 1.0 20.9132919915333 2.5450312668202537 2.3167128499477943 0.9921861908963789 0.8803594557411872 0.6455599512180417 0.0354013629900872 0.17555679830191898 1.8782649848131499 0.013356181351146072 0.011695585702451836 350.77712707237765 -2.5450312668202537 -0.1118267351551917 GSS(ph)QPNLSTSHSEQEYGK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSQPNLSTSHSEQEYGK 18 0 I3L2B2;O95208-3;O95208-2;F6PQP6;O95208;E9PBC1 I3L2B2 EPN2 Epsin-2 1 GS(0.017)S(0.983)QPNLSTSHSEQEYGK;GS(0.047)S(0.953)QPNLSTSHSEQEYGK;GS(0.015)S(0.985)QPNLSTSHSEQEYGK;GS(0.019)S(0.981)QPNLSTSHSEQEYGK 296.78 1.5148e-49 4190730000.0 2502160.0 2423380.0 2470210.0 2452600.0 2359700.0 3222120.0 3136200.0 2823900.0 3562120.0 3101520.0 True False 2488688.64857611 2504040.7383358562 2817994.096549779 2763098.908529258 2660193.807962328 2999382.428454629 2984490.0245525567 3034633.757473647 2684283.2559625483 2903578.338255134 0.8571109020160461 0.862398202020141 0.9705245625448544 0.951618515720745 0.9161777290158927 1.0329951800980397 1.0278661971097516 1.0451358303276463 0.9244741981287931 1.0 21.469400527658756 4.396455158943431 0.5904276702662105 1.0111188143511407 0.7787588452339541 0.578893418563751 0.04217743001336015 1.7830887568805012 0.6222244926233588 0.022653506621457296 0.26798865561687724 24914.67113125651 -4.396455158943431 -0.2323599691171866 GSSAGFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSSAGFDR 8 0 G3V5Z7;P60900;G3V3I1;G3V295;G3V3U4;G3V4S5;G3V2S7 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 ; 129.56 0.0025249 1006950000.0 613540.0 804960.0 740090.0 774650.0 744940.0 650130.0 713710.0 650920.0 784360.0 719710.0 False True 610236.7688107021 831752.6069914042 844288.2390224013 872720.6105733463 839803.693394692 605188.0433414046 679185.1206630326 699494.9557047858 591064.987885525 673777.4916252692 0.90569479746007 1.2344618473156048 1.2530668499860842 1.2952653085341148 1.2464110241630937 0.8982016331260714 1.0080258380622351 1.0381690756951254 0.8772406250315261 1.0 19.36191270868011 2.743412267203147 24.98980941241384 0.9762429405605765 1.199305199118292 0.4987861129429676 0.1109333092385073 355.6857361560434 1832062.1331496139 0.03478823547765671 0.03584067363892251 553.8756429824011 -2.743412267203147 0.22306225855771544 GSSCFECTHYQSFLEYR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSCFECTHYQSFLEYR 17 0 P21964-2;P21964 P21964-2 COMT Catechol O-methyltransferase 0 ;;; 248.54 6.9822e-21 7651300000.0 2003660.0 2625530.0 2653820.0 2658890.0 2497180.0 2626680.0 2858880.0 2337180.0 2512330.0 2536070.0 False True 1992872.5171875532 2712919.1788835963 3027454.7885830486 2995505.201377867 2815181.071054521 2445103.7941396367 2720585.052417835 2511592.2395595633 1893199.9349972473 2374215.8413612363 0.8393813580339675 1.142659033615144 1.2751388209284642 1.2616819200652034 1.1857308935486088 1.0298574171494692 1.1458878359003835 1.0578617983273009 0.7974000939660976 1.0 21.179019666522432 1.4389187849767264 4.421210720212917 0.9000695378346232 1.1340225431156563 0.3333003864039146 0.1257763250220816 0.2234933547391898 8.048351512103974 0.08838842290625831 0.032752199078879086 27.473803325698494 -1.4389187849767264 0.23395300528103313 GSSDGRGS(ph)DS(ph)ESDLPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3;D6RJ93;D6R8Y0;Q9UPQ0-7;Q6NVB9 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 2 GSSDGRGS(1)DS(0.953)ES(0.047)DLPHR 110.75 0.00030908 223660000.0 155440.0 176990.0 155360.0 192370.0 170380.0 169480.0 180120.0 157060.0 185670.0 167890.0 True False 154603.1283110077 182881.00515728566 177233.33758667225 216724.0222758596 192076.88307862077 157764.2465130071 171406.90747478014 168780.6147345202 139914.1163505347 157175.11646213935 0.9836361619509205 1.1635493535730155 1.1276170272752084 1.378869805565339 1.2220565659634082 1.0037482399512625 1.0905473546511986 1.0738380128713085 0.8901798166266189 1.0 17.26201330654818 2.7351668831080054 24.91499083933581 1.0275197921159902 1.1831790534195648 0.373560104026469 0.10459383939578887 340.638169655918 2500776.3711758577 0.03467873756169221 0.03391654824730984 543.4591223664647 -2.7351668831080054 0.15565926130357455 GSSDGRGS(ph)DSESDLPHR ddPTM_BT-474_Trastuzumab_2h_R1 5 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3;D6RJ93;D6R8Y0;Q9UPQ0-7;Q6NVB9 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 GS(0.007)S(0.007)DGRGS(0.959)DS(0.028)ESDLPHR;GSSDGRGS(0.995)DS(0.005)ESDLPHR;GSSDGRGS(0.992)DS(0.008)ESDLPHR;GS(0.026)S(0.026)DGRGS(0.933)DS(0.014)ESDLPHR;GSSDGRGS(0.995)DS(0.005)ESDLPHR 173.81 8.67e-10 1332020000.0 1281520.0 1325360.0 1247890.0 1320290.0 1371540.0 1910660.0 1482600.0 1306920.0 1582500.0 1458370.0 True False 1274620.438710258 1369473.8064029603 1423582.0651456767 1487438.5786276169 1546197.489245518 1778580.571409853 1410880.973917994 1404449.0068052898 1192514.0794135886 1365295.5780266253 0.9335857079040515 1.0030603104877658 1.0426914787223567 1.0894626794130067 1.1325001810086905 1.3027073404724439 1.0333886644218513 1.0286776207356183 0.8734475512893903 1.0 20.380781888813818 1.5262126387223562 2.95881391342387 0.9388705648884772 1.0836648234982866 0.24135691785353097 0.09623250789804069 0.33464690056037616 6.279467207893541 0.0740292797226958 0.027304297341203508 33.590203792391144 -1.5262126387223562 0.14479425860980943 GSSERGS(ph)PIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSSERGSPIEK 11 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 GSSERGS(1)PIEK;GS(0.013)S(0.019)ERGS(0.968)PIEK;GS(0.007)S(0.052)ERGS(0.942)PIEK 91.032 0.028913 3517740000.0 4199990.0 4114660.0 3724890.0 3912500.0 3714430.0 4433720.0 4812810.0 4227800.0 5990000.0 4736680.0 True False 4177377.720502752 4251613.970735505 4249322.134675718 4407822.098842339 4187440.643348518 4127227.3722542394 4579995.993580379 4543299.904333401 4513844.761887775 4434381.027124225 0.9420430258362024 0.9587840884058518 0.9582672550426905 0.994010679704917 0.9443123217727069 0.9307335898761996 1.0328377208826791 1.0245623631670215 1.01791991582985 1.0 22.080301309381664 2.2307297082109154 24.99998852095788 1.0216989223500585 0.9563557820007271 0.7630030123512269 0.01746779729167118 84.29702887758701 269114.0246131148 0.006656641070873461 0.005006454855577947 170.10994658613515 -2.2307297082109154 -0.06534314034933142 GSSGENNNPGS(ph)PTVSNFR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSGENNNPGSPTVSNFR 18 0 D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3;D6R8Z7;D6RDZ7 D6RD37 TSC22D3 1 GSSGENNNPGS(1)PTVSNFR;GSSGENNNPGS(1)PTVSNFR;GSSGENNNPGS(0.997)PT(0.003)VSNFR;GSSGENNNPGS(0.997)PT(0.003)VSNFR 502.69 7.583599999999992e-267 2550440000.0 3840050.0 4727830.0 4361200.0 4647590.0 4515410.0 4448400.0 4353120.0 3394530.0 3894770.0 3730060.0 True False 3819375.5974696623 4885192.963516409 4975219.051770046 5235974.417471858 5090420.69856811 4140892.5784072517 4142542.955066713 3647847.0656740773 2934956.1207441823 3492004.3773349687 1.0937488000471915 1.3989653034870178 1.424745937909459 1.499418056705832 1.457736058868581 1.185821130489963 1.1862937463521233 1.044628434417383 0.8404789351908215 1.0 21.7356239367553 1.9867401952877548 1.280919500244788 0.9308124603747974 1.3786721144931315 0.6866887899367276 0.11867493810476837 0.2557583375772631 0.7779927328463492 0.08873665954560447 0.04100684757770666 96.99295600114807 -1.9867401952877548 0.44785965411833417 GSSGGSGAKPSDAASEAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSSGGSGAKPSDAASEAAR 19 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 165.06 2.0577e-11 419887000.0 370858.0 361438.0 315929.0 318146.0 345042.0 422087.0 403824.0 407038.0 476782.0 435793.0 False True 368861.3417341975 373468.2453361155 360409.0570959048 358423.25097975583 388981.053475839 392909.11917592364 384289.4903625117 437413.2424570836 359285.46465148166 407980.3176388412 0.9041155315260252 0.9154075066599731 0.8833981481796672 0.8785307415174006 0.9534309295287597 0.9630590060075909 0.9419314455818883 1.0721430018697555 0.8806441122719405 1.0 18.63814002778609 2.890271040010377 1.6404471942419108 0.9859518984845924 0.8960303701231003 0.3474289588425139 0.04722118017889031 0.368693948873669 1.9983040150222267 0.0175043332359205 0.019104208734512292 776.7317179802229 -2.890271040010377 -0.08992152836149214 GSSGGSGAKPSDAASEAARPATSTLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSSGGSGAKPSDAASEAARPATSTLNR 27 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;; 223.09 1.2309999999999998e-34 2066390000.0 634520.0 621890.0 559030.0 651900.0 601800.0 701860.0 661140.0 620340.0 843250.0 745020.0 False True 631103.8148217998 642589.2327095572 637736.5648241334 734430.4731591872 678435.6628519425 653342.0702007262 629158.1323999353 666632.9208226934 635442.3364710953 697472.1857562884 0.9048444191899587 0.921311624796593 0.9143541174084499 1.0529889050167986 0.97270640565587 0.9367284940435142 0.9020547990995823 0.9557842369009237 0.9110647699622139 1.0 19.41177615980649 3.745794983499332 0.004522056109076427 1.8817332631565726 8.87608724195433e-08 0.07579656399562751 0.044782994367114776 86715.1573199505 87.35964685705895 17763.520845372263 18592.40087836157 5569.22781478341 -3.745794983499332 -1.8817331743957002 GSSGPTQINQVVSHPNQPLTITAHDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSSGPTQINQVVSHPNQPLTITAHDDR 27 0 F5GYK2;Q9NRL3;Q9NRL3-3;M0R317 F5GYK2 STRN4 Striatin-4 0 ; 376.08 2.315999999999999e-127 1593220000.0 297380.0 312430.0 302210.0 339210.0 326600.0 335550.0 330820.0 272360.0 328750.0 327620.0 False True 295778.9391220239 322829.04368207697 344758.5411435903 382153.9512200149 368190.57409013686 312354.2182997373 314816.972744875 292684.886216057 247733.96752430813 306711.01111040625 0.9643570931842184 1.0525512028841661 1.1240500948936851 1.2459740191148585 1.200447850754207 1.018399102037128 1.0264286619678968 0.9542692489468522 0.8077113587393566 1.0 18.226520435594146 2.010674652565919 1.5745792153384701 0.908576172931519 1.1160902459367648 0.46866751286955355 0.08767365347445631 0.3535692606427997 1.6379449244332875 0.060830655757860154 0.029750414163451134 102.48838569434236 -2.010674652565919 0.2075140730052457 GSSGS(ph)PAHAESYSSGGGGQQK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 GS(0.021)S(0.131)GS(0.848)PAHAESYSSGGGGQQK;GS(0.002)S(0.016)GS(0.982)PAHAESYSSGGGGQQK;GS(0.01)S(0.075)GS(0.915)PAHAESYSSGGGGQQK 350.53 1.508699999999999e-95 1460780000.0 1043590.0 1231384.0 1187799.0 1209376.0 1255149.0 1484140.0 1386162.0 1369887.0 1558920.0 1395110.0 True False 1037971.4273937487 1272369.8720526518 1355030.7746660123 1362482.8775998857 1414984.7852990243 1381544.8950897702 1319108.0484069325 1472114.9240852382 1174745.054457777 1306072.8853862376 0.7947270317052751 0.9741951511966203 1.0374848064205058 1.043190539245416 1.0833888377374734 1.0577854502210369 1.009980425416182 1.127130760125916 0.8994483137978752 1.0 20.31680397803948 4.76285266884812 1.9369554707677874 1.0437894458340733 0.7081919064634894 0.6050308120932288 0.05713996282298042 0.5033025614940403 1.8943782532431936 0.013817414736020573 0.30890949464161266 57923.21629173363 -4.76285266884812 -0.3355975393705839 GSSPS(ph)HSATSVHTSV ddPTM_BT-474_Trastuzumab_2h_R1 3 GSSPSHSATSVHTSV 15 0 F8WA39;Q13613 F8WA39 MTMR1 Myotubularin-related protein 1 1 GSS(0.013)PS(0.931)HS(0.055)ATSVHTSV;GSS(0.007)PS(0.992)HS(0.002)ATSVHTSV;GSS(0.009)PS(0.99)HSATSVHTSV 236.5 1.0905999999999999e-17 1024930000.0 253234.0 660547.0 823332.0 977630.0 921130.0 781480.0 816130.0 624706.0 510782.0 808650.0 True False 251870.61628094243 682532.9075859064 939249.9890699654 1101397.857761337 1038430.4455347453 727458.1270060454 776650.6739806376 671324.7339127915 384906.6202281403 757041.264679904 0.3327039463132035 0.901579529980441 1.2406853270635172 1.4548716287308798 1.3716959616115771 0.960922688030266 1.0259026954217945 0.8867742951854076 0.5084354554845679 1.0 19.530012414973502 -0.9895885399950181 4.432923085086737 1.000000099361136 0.9926738791978457 0.0 0.3332366328823242 8.314212083882624e-07 1.8980889918938977e-07 0.335098385739373 0.07898082594803744 0.10242629416432955 0.9895885399950181 -0.00732622016329032 GSSPSIRPIQGSQGSS(ph)SPVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 GSSPSIRPIQGSQGS(0.05)S(0.824)S(0.126)PVEK 222.42 2.3836e-25 855070000.0 560880.0 529530.0 494520.0 532690.0 559590.0 600060.0 601730.0 571300.0 815910.0 648540.0 True False 557860.2843996265 547155.0859423558 564144.1175551051 600128.4993820639 630850.4695502132 558579.2645893018 572622.0210681747 613933.3070026189 614839.9131338655 607149.6219569712 0.9188184661987028 0.9011865710774217 0.9291681937258722 0.98843592695936 1.0390362552097934 0.9200026556697557 0.9431316439306892 1.0111730038203472 1.0126662208107893 1.0 19.211692563002988 3.832531552999162 3.8185066848034586 0.9863990338777898 0.9112413876678116 0.5030187655930543 0.03278891580040338 0.20657889113916297 5.526442933902977 0.009142896790673158 0.01741118711312687 6800.354501406954 -3.832531552999162 -0.07515764620997822 GSSPSIRPIQGSQGSSS(ph)PVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 GSSPSIRPIQGSQGS(0.078)S(0.232)S(0.69)PVEK 122.79 1.6646e-05 772660000.0 225760.0 194210.0 192000.0 179590.0 186540.0 209130.0 225910.0 213970.0 257570.0 208050.0 True False 224544.53324429423 200674.1624475757 219031.931106083 202326.0755862227 210294.76329079637 194673.33533906724 214981.8702399937 229937.5279176444 194095.32476117433 194772.07087943348 1.152857964853135 1.0303025559131407 1.1245551280381811 1.0387838188128382 1.079696705699513 0.9994930713632585 1.103761279886326 1.1805467122644027 0.9965254457931083 1.0 17.571427293066005 -3.2917566201857715 0.8087903946785815 0.07511243956383086 1.0833772832846635 0.1305238284652993 0.05978784204966244 12123.754018993634 252.27441780867508 20189.60285086515 0.01969735078983172 0.0005107911685495192 3.2917566201857715 1.0082648437208326 GSSPT(ph)PPCS(ph)PVQPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSPTPPCSPVQPSK 15 0 E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;H0YBY0 E7EPX0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 GS(0.001)S(0.366)PT(0.633)PPCS(1)PVQPSK 234.63 6.1981e-17 889510000.0 352190.0 355330.0 313600.0 316120.0 297800.0 412870.0 336250.0 292910.0 387700.0 325720.0 True False 350293.8481719876 367156.94424847886 357752.154139936 356140.759587486 335723.0648011103 384329.26869143936 319984.3029002604 314768.43156684213 292156.5299138378 304932.2707370779 1.1487595174012326 1.2040606373375713 1.1732184110103618 1.1679339767044912 1.1009758461759567 1.260375845962266 1.0493618865815642 1.032256870701118 0.9581030213943614 1.0 18.218129312120404 2.076830003306999 6.16472233916122 1.009970522970069 1.173025172267794 0.7914870337925851 0.04217070922466562 0.09132929103054671 5.705338934446483 0.01565824820247626 0.011461038354685328 119.35208309491112 -2.076830003306999 0.16305464929772495 GSSSS(ph)SPEHSASSDSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSSSSSPEHSASSDSTK 17 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 GS(0.1)S(0.1)S(0.077)S(0.361)S(0.361)PEHSASSDSTK 109.28 0.00039575 266430000.0 241200.0 269340.0 263670.0 231290.0 291340.0 317380.0 335680.0 299260.0 392400.0 338910.0 True False 239901.40599983925 278304.81908053183 300792.44413927523 260571.29028530233 328440.4220925305 295440.26763215795 319441.8759778721 321592.30081148894 295698.27789061144 317280.47364455106 0.7561177756832288 0.8771570966334234 0.9480332674876571 0.8212648175040864 1.035173763830427 0.9311643551160962 1.0068122765592642 1.0135899543940055 0.9319775481105776 1.0 18.275399210810534 6.279492836931925 0.43250619195483425 0.9941721664685665 1.2071664344622954e-11 0.6078456468622087 0.05386414598148641 11.81030778254719 0.6025307725203761 0.033742995387602046 8.00107118524339 1903236.8461401493 -6.279492836931925 -0.9941721664564949 GSSVDAPPRPCHTTPDSQFGTEHVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSSVDAPPRPCHTTPDSQFGTEHVLR 26 1 Q9BSJ8-2;Q9BSJ8 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 0 ;; 260.8 5.4966e-53 539930000.0 268489.0 481430.0 520750.0 492820.0 624190.0 591170.0 428340.0 346980.0 432240.0 493000.0 False True 267043.48505593213 497454.10651941976 594067.0735598579 555210.9614700271 703676.8966360153 550303.809364494 407619.55778229755 372873.4095287391 325720.2437192601 461536.31792146445 0.5785969049165326 1.0778222367412202 1.2871513042250882 1.2029626703493839 1.5246403572421656 1.1923304580727152 0.8831798104600266 0.807896139588711 0.7057304724927086 1.0 18.81608465128652 2.1769439370917603 4.871346358220773 0.8250778132547012 1.1676212130411006 0.2735470215217847 0.23340158220911997 0.2582548229086647 12.161601336821896 0.09336475701833784 0.06887350204860923 150.29479385933868 -2.1769439370917603 0.34254339978639936 GSTAPVGGGAFPTIVEREPWDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GSTAPVGGGAFPTIVEREPWDGR 23 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 ;;; 195.13 9.1855e-19 1266610000.0 543395.0 866892.0 724635.0 861304.0 794747.0 816476.0 795414.0 624640.0 898835.0 812845.0 False True 540469.4216968601 895745.9761727196 826657.3093596697 970344.9980885104 895953.3196154741 760034.9358977693 756936.7860434434 671253.8086576513 677329.1580219358 760968.5361883843 0.7102388548204867 1.1771130258018578 1.0863225876595555 1.2751447030239542 1.177385498884376 0.9987731420601287 0.9947018175480217 0.8821045506295108 0.8900882570186281 1.0 19.537477278200587 2.298805104567907 2.259638664009579 0.9195553796312508 1.098796928727524 0.1727144700220824 0.144467259158581 0.45560656466012694 4.768491807671987 0.0629368710151417 0.04530048641306494 198.97801982366477 -2.298805104567907 0.17924154909627332 GSTDDKGPVAGWINALEAYQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSTDDKGPVAGWINALEAYQK 21 1 Q96KP4;J3QKT2;J3QRH4;A0A087WYZ1;J3KSV5;A0A087WVS2 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ; 241.13 4.9642e-30 753750000.0 1008680.0 925180.0 812950.0 763760.0 747850.0 1074470.0 1096850.0 999930.0 1467480.0 1147910.0 False True 1003249.3789548825 955974.0570168807 927406.2937119278 860451.9376899227 843084.2646457701 1000194.4179303196 1043791.1751260984 1074549.854141657 1105839.217224553 1074649.4010248042 0.9335597060754574 0.8895683151223528 0.8629849817322163 0.8006815402952637 0.7845202945647114 0.9307169547356718 0.9712853086138802 0.9999073680373782 1.0290232481123665 1.0 20.03543463388082 2.3757444839382624 2.710468205693136 1.00196747973807 0.8538934538182816 0.7283989987208298 0.04181200748942075 0.15432846649148302 2.313694379960335 0.017937489808135865 0.014253277184440485 237.5442289938528 -2.3757444839382624 -0.14807402591978835 GSTDNLMDDIER ddPTM_BT-474_Trastuzumab_2h_R1 2 GSTDNLMDDIER 12 0 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 302.09 3.1684999999999986e-36 2173400000.0 1337440.0 1658150.0 1480720.0 1646030.0 1577530.0 1504050.0 1603380.0 1372400.0 1722290.0 1553970.0 False True 1330239.371643553 1713340.52037716 1689192.505351038 1854417.229228742 1778419.0947471324 1400078.5636528693 1525818.3838935874 1474815.4569059927 1297854.70700362 1454794.304179349 0.9143831315685158 1.1777201185453205 1.1611211980266263 1.2746937652294568 1.222453985170323 0.9623893629709082 1.0488207023564773 1.0137621880076975 0.892122483072094 1.0 20.472383751791867 2.7314326588624542 24.80821406692706 0.9921622572338686 1.159147316484817 0.42663255196634997 0.09604666848471405 504.80541040440136 1756926.027855539 0.03142557073163045 0.030222615079769144 538.8062922926955 -2.7314326588624542 0.1669850592509483 GSTDS(ph)LDSLSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSTDSLDSLSSR 12 0 Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q9ULJ8 PPP1R9A Neurabin-1 1 GS(0.004)T(0.014)DS(0.972)LDS(0.009)LSSR 70.438 0.040478 0.0 176160.0 185890.0 173610.0 173130.0 201570.0 185760.0 207920.0 148710.0 209260.0 181620.0 True False 175211.57413321614 192077.2362771221 198052.7789548284 195048.24024858105 227238.744701007 172918.8484320047 197862.1152684671 159807.49533407917 157690.67694033982 170028.85610729523 1.030481402654679 1.1296743427828124 1.1648186283735797 1.1471478707443492 1.3364716431286814 1.0169970697378907 1.1636972676191384 0.9398845524975716 0.9274347928379315 1.0 17.375420085682556 1.7229116848925181 6.126257211501759 0.95091578158327 1.1448383608873878 0.5045189078492427 0.08398701156262815 0.11009456607739539 10.552039912296685 0.041966130671550195 0.021595078512570972 52.833780174700344 -1.7229116848925181 0.19392257930411783 GSTIETEQKEDKGEDSEPVTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSTIETEQKEDKGEDSEPVTSK 22 2 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 0 190.19 1.0504e-17 846200000.0 986220.0 585540.0 538410.0 487540.0 474520.0 881340.0 880060.0 847500.0 1627500.0 761740.0 False True 980910.3010993437 605029.3449335949 614213.4480563862 549262.5140113976 534947.3092996064 820415.0402512011 837488.1356443205 910744.7535178 1226424.4323826947 713125.1010415753 1.375509429785387 0.8484196448139352 0.8612983152034323 0.7702190165640734 0.7501451127134268 1.1504503754711768 1.1743916101411984 1.2771177906759776 1.7197886185627254 1.0 19.44379566025134 2.235335565492841 1.7499958467230519 1.3494087118955356 0.9108136405561466 0.3531046781871716 0.23592004044600082 0.36914413761126674 2.254824470695395 0.1212353344826455 0.07568148978559967 171.92362731112064 -2.235335565492841 -0.438595071339389 GSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNK 40 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 158.54 1.4674000000000002e-18 853850000.0 306525.0 337047.0 316908.0 326166.0 334803.0 376058.0 355496.0 266596.0 443925.0 348923.0 False True 304874.7034581292 348265.40564578614 361525.8917862845 367458.5821574465 377438.1775171463 350061.99560531264 338299.3003534002 286490.7472670579 334525.6320402382 326654.4354119908 0.9333248546697611 1.0661585084755965 1.1067533533726928 1.1249153304592105 1.1554662560791646 1.0716584795911288 1.0356488805263653 0.8770453305056864 1.0240964021147299 1.0 18.31740570365525 1.9668224441120035 6.540117122866713 0.9535041513885595 1.0809820373681707 0.3493406495525796 0.0657735404540847 0.19330087533526297 26.52830253241172 0.028579324097615443 0.018204898455185536 92.64509780019333 -1.9668224441120035 0.12747788597961118 GSVFLESDSS(ph)PPSSSDAGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSVFLESDSSPPSSSDAGLR 20 0 Q8TBP0 Q8TBP0 TBC1D16 TBC1 domain family member 16 1 GSVFLES(0.001)DS(0.159)S(0.84)PPSSSDAGLR;GSVFLESDS(0.304)S(0.696)PPSSSDAGLR 339.18 3.480299999999999e-80 592700000.0 765540.0 918730.0 746030.0 855940.0 859660.0 786630.0 779990.0 812080.0 889630.0 826730.0 True False 761418.4176994907 949309.3726659877 851064.5393909946 964301.9162384935 969132.60539598 732252.1196278424 742258.9038488448 872681.5332586841 670392.6069312543 773967.3836008378 0.983786182509444 1.2265495843628211 1.0996129261048015 1.2459206119928925 1.252162075470348 0.9461020388495992 0.9590312454712612 1.1275430357266278 0.8661768197676394 1.0 19.561913244283485 2.731392796144134 24.98852377675216 0.9974424352419963 1.1664542932212363 0.46444015079161616 0.09663447060937903 546.570257568617 1905454.4030395483 0.030791042505121442 0.029592493127587254 538.7568389870079 -2.731392796144134 0.16901185797924 GSVHS(ph)LDAGLLLPSGDPFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 GSVHSLDAGLLLPSGDPFSK 20 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 GS(0.133)VHS(0.867)LDAGLLLPSGDPFSK;GS(0.043)VHS(0.957)LDAGLLLPSGDPFSK;GS(0.033)VHS(0.967)LDAGLLLPSGDPFSK 214.92 7.923700000000001e-25 1182000000.0 2424810.0 2804880.0 2710130.0 2759900.0 2512230.0 3229280.0 3055700.0 2946710.0 3516800.0 3399550.0 True False 2411755.0923817153 2898238.7352142315 3091692.747127752 3109303.057021077 2832147.599346187 3006047.4745074534 2907884.1170924176 3166608.46329019 2650131.7627056637 3182587.8084988133 0.7577968739594053 0.9106547594617018 0.9714398889079087 0.9769732193147864 0.8898882826683344 0.9445293124293618 0.9136854321276464 0.9949791345376389 0.8326971389850505 1.0 21.601768888364614 4.720786252830069 3.4350355926857614 0.9414579104363316 0.73812489688816 0.5551672741420242 0.048772688692506325 0.19190934051436886 3.9210836756495757 0.011033911781619408 0.09942593369782485 52575.84396206324 -4.720786252830069 -0.20333301354817168 GSVILDSGHLSTAS(ph)SSDDLKGEEGSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GSVILDSGHLSTASSSDDLKGEEGSFR 27 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 1 GSVILDSGHLST(0.004)AS(0.552)S(0.434)S(0.01)DDLKGEEGSFR 206.93 1.555e-25 1213000000.0 442820.0 655360.0 689840.0 778710.0 711900.0 751030.0 855730.0 734660.0 771850.0 690370.0 True False 440435.90632192756 677173.2614265138 786963.4758032307 877294.6061570643 802556.2452381147 699113.0638344556 814335.0706939477 789484.0597278906 581637.9097601131 646309.9955445068 0.6814623158518022 1.0477530381624458 1.2176254138545781 1.357389816349593 1.241751250592949 1.0816992908263208 1.2599759810427846 1.2215253750837658 0.8999364295303705 1.0 19.30186677830855 4.691097377038022 2.6772971556054848 1.1813139115818043 0.6109791659717904 0.5480110115224203 0.12910897238870855 0.278923023309852 2.84737410430528 0.03134947298893812 0.33611337727721735 49101.79593254271 -4.691097377038022 -0.570334745610014 GSVILDSGHLSTASS(ph)SDDLKGEEGSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSVILDSGHLSTASSSDDLKGEEGSFR 27 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 1 GSVILDSGHLSTAS(0.185)S(0.733)S(0.081)DDLKGEEGSFR;GSVILDSGHLSTAS(0.157)S(0.743)S(0.1)DDLKGEEGSFR 284.48 1.4408999999999994e-61 1498910000.0 526740.0 844900.0 919170.0 943490.0 880790.0 1073230.0 1086030.0 911620.0 1025180.0 1073680.0 True False 523904.09036631504 873021.985747164 1048581.1464311378 1062935.7372617896 992953.3856486569 999040.1362116727 1033494.5798625124 979649.7135125626 772538.1257081985 1005156.8231763059 0.5212162702241554 0.8685430627515471 1.0432015405492754 1.0574824870639605 0.9878591705828689 0.9939146938829859 1.0281923736006278 0.9746237511643799 0.7685747217702509 1.0 19.93898917557254 4.695186563551768 2.8388834298579155 0.9855016981394168 0.46111398981668356 0.7647489858726837 0.07663629004409958 0.1656881179075994 1.9759301342970281 0.018876795453833764 0.19069058531443978 49566.307125254585 -4.695186563551768 -0.5243877083227333 GSVIS(ph)PTELEAPILVPHTAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSVISPTELEAPILVPHTAQR 21 0 Q8N1B4-2;Q8N1B4 Q8N1B4-2 VPS52 Vacuolar protein sorting-associated protein 52 homolog 1 GS(0.046)VIS(0.929)PT(0.025)ELEAPILVPHTAQR;GS(0.038)VIS(0.924)PT(0.038)ELEAPILVPHTAQR 183.56 2.7495000000000004e-17 410610000.0 119108.0 164340.0 143117.0 176317.0 153202.0 160022.0 149580.0 125823.0 169142.0 168095.0 True False 118466.73576214278 169809.95755437223 163266.62960473567 198638.71412181063 172711.36660060348 148960.0557912699 142344.24394890998 135212.5511762479 127459.22048668125 157367.03318663014 0.7528052944967617 1.0790694474933982 1.0374894048559007 1.2622638306095162 1.0975066575460926 0.9465772644681562 0.904536617781287 0.8592177690475485 0.8099486779770476 1.0 17.26377381680955 2.507610007634679 3.256793754159541 0.8813161938612555 1.0584008934474505 0.24300901266098252 0.12568555730403666 0.32404661838110255 7.0428500528446225 0.04564462452257732 0.04020475605696074 321.81776000906535 -2.507610007634679 0.177084699586195 GSVPLSSS(ph)PPATHFPDETEITNPVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 GSVPLS(0.03)S(0.146)S(0.824)PPATHFPDETEITNPVPK;GS(0.001)VPLS(0.105)S(0.259)S(0.635)PPATHFPDETEITNPVPK;GSVPLS(0.019)S(0.125)S(0.856)PPATHFPDETEITNPVPK;GSVPLS(0.002)S(0.012)S(0.986)PPATHFPDETEITNPVPK 242.63 2.3150999999999998e-45 18501300000.0 2483390.0 4001130.0 3704920.0 3432110.0 3519730.0 4832550.0 4931600.0 4869160.0 6433880.0 5063270.0 True False 2470019.704170564 4134305.1933158436 4226540.532258068 3866614.7740978305 3967946.7524258294 4498487.19309908 4693039.667458513 5232521.444293484 4848336.4835750405 4740127.7737164665 0.5210871567358534 0.8721927742623631 0.891651181998471 0.8157195245954807 0.8370970028334883 0.9490223487313444 0.9900660681513582 1.1038777210410426 1.0228282263736814 1.0 22.17649451790395 5.589915641740708 0.3352738553793167 1.0582012571971147 2.1768033270386073e-12 0.7287700508248354 0.07943562427921265 6.736924451614917 0.392634136046483 0.0801043885766124 3.228390504782848 388969.5833987283 -5.589915641740708 -1.058201257194938 GSWAQDGDESWMQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSWAQDGDESWMQR 14 0 I3VM54;Q9Y2K7;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 0 ;; 279.86 7.133599999999998e-33 566890000.0 554560.0 682040.0 640730.0 681020.0 653020.0 646750.0 672290.0 594110.0 697970.0 685140.0 False True 551574.3105774082 704741.2890981135 730939.2146750025 767237.0621734456 736178.2262472176 602041.6947857408 639768.7643027981 638445.5050294512 525964.6458188324 641413.7786221347 0.8599352383141552 1.0987311351683418 1.1395751682247668 1.1961655451518372 1.1477430806501427 0.938616716465038 0.997435330555464 0.9953722952458867 0.8200083368160463 1.0 19.290895820009812 2.730697663403445 24.695636435666202 0.9577156482500487 1.0978290199033172 0.3318563675349555 0.09726778150437497 620.3737396518744 1948439.5015682192 0.03202780650115055 0.03070672681514941 537.8951933187012 -2.730697663403445 0.14011337165326843 GSYGS(ph)DAEEEEYR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSYGSDAEEEEYR 13 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GS(0.003)YGS(0.997)DAEEEEYR;GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR 360.22 1.7485e-76 9610600000.0 9081160.0 9264560.0 8488930.0 9219520.0 8586620.0 9426630.0 8704380.0 8179100.0 9080090.0 8704760.0 True False 9032268.043571725 9572925.279055212 9684097.556897724 10386710.286701314 9680075.160115892 8774989.256000152 8283315.885439318 8789465.974628251 6842423.486472377 8149214.764280019 1.108360535933148 1.1747052392109802 1.1883473238851756 1.2745657817522222 1.187853730711087 1.0767895447378628 1.0164557107694714 1.0785660003899527 0.8396420617682546 1.0 22.958229621274416 2.206910410748965 1.134416601524892 0.9627263854050554 1.1913541960180332 0.6736521675348579 0.06689265075511117 0.310701996706229 0.7628214647088231 0.047219939487953055 0.025949173907113106 161.031341439276 -2.206910410748965 0.22862781061297777 GSYGS(ph)DAEEEEYRQQLSEHSK ddPTM_BT-474_Trastuzumab_2h_R1 6 GSYGSDAEEEEYRQQLSEHSK 21 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GS(0.014)YGS(0.986)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GS(0.024)YGS(0.976)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK 310.8 9.576699999999999e-67 7363590000.0 2270410.0 2822950.0 2736030.0 3007040.0 2962390.0 3400500.0 3876800.0 3117480.0 4234690.0 3703560.0 True False 2258186.3648262643 2916910.184240689 3121239.242000918 3387730.9556812407 3339632.8070388213 3165431.4389159763 3689264.3731858158 3350122.1878426806 3191107.3914388176 3467195.630022763 0.6513005338586675 0.8412880308751252 0.9002201130428935 0.9770809948958662 0.9632086456618244 0.9129659173270228 1.0640485184164803 0.9662339669655982 0.920371312136739 1.0 21.725337809528394 5.353060783153543 0.8487550206230599 0.977345316661166 1.665876698432504e-08 0.8565602926854391 0.040304086983062225 1.962933327776828 0.5228369963233908 0.01308217914840733 2.291508423065024 225455.4733907471 -5.353060783153543 -0.9773453000023989 GSYNPVTHIYTAQDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 GSYNPVTHIYTAQDVK 16 0 H3BS10;H3BP20;P06865;H3BU85;H3BTD4;P06865-2 H3BS10 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha 0 156.49 1.6157e-08 0.0 364840.0 362820.0 345710.0 327210.0 290520.0 369840.0 416710.0 361050.0 402380.0 358100.0 False True 362875.74197753484 374896.2443706785 394382.963034812 368634.75245040294 327515.9999530511 344273.83130971546 396552.1453132117 387993.3843747514 303218.84061576007 335245.7514151657 1.0824171236942906 1.1182729170709458 1.1763995855876224 1.099595597839176 0.9769430293165978 1.0269297369360826 1.1828700099531602 1.1573401981588827 0.9044673626311113 1.0 18.354859523341773 1.2375987367759593 24.99996013758457 0.9522336490292843 1.1053362774034385 0.4641834669447983 0.06456560089405222 23.824703313888588 619060.1119901442 0.0560317287568475 0.017082597745368886 17.282188461054016 -1.2375987367759593 0.15310262837415423 GSYSLSHVYTPNDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 GSYSLSHVYTPNDVR 15 0 P07686;Q5URX0 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A 0 ;; 148.91 3.4493e-06 1084350000.0 678560.0 964830.0 1037740.0 1053260.0 958170.0 960240.0 1018470.0 860630.0 836650.0 777840.0 False True 674906.7083551032 996943.7832979494 1183844.771802221 1186602.6080068185 1080187.2699814648 893860.8689618239 969202.7151667762 924854.5807905885 630468.818035627 728197.5852576711 0.9268181081873389 1.3690567003805472 1.6257191671176994 1.6295063757825312 1.4833711232360693 1.2274977108658405 1.3309611770050378 1.2700599391075031 0.8657936126120729 1.0 19.47397043117288 1.389341998324782 2.9404559379550306 0.930576935448193 1.387422417603752 0.4319511476741905 0.1951776528751892 0.24606929518690537 3.61820644376005 0.16796187504567892 0.05376695428481048 24.509925903273643 -1.389341998324782 0.456845482155559 GSYVSIHSSGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSYVSIHSSGFR 12 0 O00148;O00148-2;O00148-3;K7EQN7;K7EPJ3;A0A0G2JJL7;F6QYI9;K7EIL8;K7ENP6;K7EN69;K7EL56;F6SXL5;Q13838-2;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;F6R6M7;F6U6E2;F6S2B7;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ; 182.35 1.6994e-05 1468120000.0 516220.0 1265040.0 1469840.0 1585170.0 1470030.0 1245920.0 1275330.0 1095730.0 953140.0 1155140.0 False True 513440.72887743387 1307146.0916671702 1676780.6959216923 1785852.359468859 1657229.6069495522 1159792.4829802094 1213637.4156662864 1177498.936604199 718251.4184216551 1081417.9762348894 0.4747847179913273 1.2087334595807122 1.5505389523481412 1.651398810371692 1.5324598290102713 1.0724738338622704 1.1222648803118085 1.0888472010645034 0.6641755863189455 1.0 20.044492812740742 1.7818496856398531 1.3990394619979702 0.8614551791063761 1.293701648580203 0.1817431080866172 0.32422608616444193 0.6866554526660109 2.5477334639962197 0.26710292439772304 0.10700195849096064 60.5131395505909 -1.7818496856398531 0.43224646947382694 GSYWTLHPDSGNMFENGCYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GSYWTLHPDSGNMFENGCYLR 21 0 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 0 ; 161.31 2.0069000000000003e-11 1622890000.0 499160.0 701680.0 640220.0 690650.0 631870.0 572580.0 500440.0 578900.0 594490.0 618430.0 False True 496472.5780218901 725034.994625483 730357.4111080023 778086.2191860602 712334.899113089 532998.8923083409 476231.8053335503 622100.4575946372 447985.90525787347 578961.2679354398 0.8575229562286573 1.2523031069261994 1.2614961510507205 1.343934840340347 1.2303671049589482 0.9206123480574105 0.822562460925547 1.074511356887535 0.7737752593629952 1.0 19.14310731068839 2.7362391110665776 24.61026645709181 0.9274725632493848 1.2052559272807966 0.46653476766730617 0.14412276939217417 149.00012792413816 1579540.2693354313 0.0455565273591172 0.044883678889772766 544.8025241589761 -2.7362391110665776 0.2777833640314118 GT(ph)FSDQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 GT(0.534)FS(0.466)DQELDAQSLDDEDDNMHHAVYPAVNR 159.8 8.531e-12 683960000.0 74331.0 106050.0 105960.0 96663.0 85863.0 103960.0 106120.0 63880.0 114820.0 90441.0 True False 73930.81015495051 109579.81014142117 120878.24697916962 108900.52588891926 96797.14410012665 96773.48989551683 100986.57018223243 68647.04997606725 86524.14950917436 84668.97794956439 0.8731747086753499 1.2942143958167969 1.4276568574050152 1.286191572476393 1.1432421465839209 1.142962773841003 1.1927222062652996 0.8107697959571323 1.021910876976867 1.0 16.369545853754776 1.7570610009277448 24.999999999976378 0.9310500703728184 1.2067217477803787 0.382095033675806 0.14484624388296613 7.290638147135972 9861.850809418893 0.06805410109540673 0.03774010621530268 57.15589120998462 -1.7570610009277448 0.27567167740756027 GT(ph)PDTDLEVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTPDTDLEVQR 11 0 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 GT(0.987)PDT(0.013)DLEVQR;GT(1)PDTDLEVQR 138.63 0.00059939 446070000.0 694680.0 614600.0 538570.0 549360.0 512960.0 676920.0 675470.0 589860.0 874430.0 639580.0 True False 690939.9200662036 635056.5894664545 614395.9746656411 618908.9196728499 578282.415447876 630126.113698281 642794.935554019 633878.3484483891 658938.4432616895 598761.4568280139 1.1539485586238507 1.0606170157156023 1.0261114299515075 1.0336485634054817 0.9657976625806423 1.0523825582167963 1.073540937252835 1.058649218682862 1.1005024384042152 1.0 19.191621830380956 4.72269571788849 3.309172727130687 1.0413678779372788 1.167283549404499 0.4814185333639869 0.03562095298612698 0.27606743129085365 5.02343363999468 0.009056364124431258 0.08678830928291045 52807.51339702427 -4.72269571788849 0.12591567146722027 GT(ph)PPPVFTPPLPK ddPTM_BT-474_Trastuzumab_2h_R1 4 GTPPPVFTPPLPK 13 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 GT(1)PPPVFTPPLPK;GT(1)PPPVFTPPLPK;GT(1)PPPVFTPPLPK;GT(1)PPPVFTPPLPK 128.31 0.0018641 1189949000.0 946580.0 1073920.0 938610.0 932820.0 908980.0 1071990.0 1079710.0 1040520.0 1420670.0 1194560.0 True False 941483.7184549241 1109664.778001651 1070758.129455627 1050914.9163558115 1024733.2150534377 997885.8544930288 1027480.302407256 1118168.8860535002 1070564.9145026868 1118322.1580857306 0.8418716482077876 0.9922585991688667 0.9574684018498564 0.9397246658822335 0.9163130745862246 0.8923062529684141 0.9187695110736501 0.9998629446522881 0.9572956296736609 1.0 20.092904418436955 1.7508033386894084 10.988467566773691 0.9834103334408111 0.9259280963194224 0.352578355846484 0.03893036948827223 0.1428116557937421 89.64524026731358 0.01812063490907272 0.009901582022342785 56.33824819027328 -1.7508033386894084 -0.05748223712138867 GT(ph)PS(ph)QSPVVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPSQSPVVGR 11 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 GT(1)PS(0.978)QS(0.023)PVVGR 103.88 0.0045338 0.0 79962.0 68505.0 63347.0 59608.0 63878.0 71664.0 71339.0 64083.0 79614.0 66980.0 True False 79531.49347661337 70785.14751285297 72265.7069780054 67154.36668825414 72012.48466543094 66710.03635891047 67888.0600285552 68865.19886688044 59994.196472943695 62705.279055536965 1.2683380837229625 1.1288546766558492 1.152466077281961 1.0709523615830925 1.1484277839135482 1.06386635006961 1.082653024611021 1.0982360640782372 0.9567646835573108 1.0 15.936299285840601 7.999999999999999 0.19192323127841698 0.9951456636834176 2.0454037852187303 0.7015988700455438 0.044763870030549144 31.42556873194528 0.36930584905698105 0.08589686836491751 9.816569870764697 99999999.99999979 -7.999999999999999 1.0502581215353128 GT(ph)PSQS(ph)PVVGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GTPSQSPVVGR 11 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 GT(0.995)PS(0.005)QS(1)PVVGR;GT(1)PSQS(1)PVVGR;GT(0.908)PS(0.106)QS(0.986)PVVGR;GT(0.98)PS(0.048)QS(0.972)PVVGR;GT(1)PS(0.051)QS(0.949)PVVGR;GT(0.999)PS(0.004)QS(0.997)PVVGR 237.26 7.5085e-15 4831570000.0 3726590.0 3561330.0 3227910.0 3147170.0 3160220.0 3843280.0 3371560.0 2965850.0 3751540.0 3347080.0 True False 3706526.4535030676 3679866.7161805565 3682371.6705033155 3545601.399313394 3562655.284908546 3577603.0997079858 3208464.762190044 3187176.787281146 2827023.235060508 3133466.488820646 1.1828837061851287 1.174375640942489 1.1751750604772744 1.1315268288214133 1.136969326979921 1.1417397034472518 1.0239346020252558 1.0171408561898216 0.9022031175844886 1.0 21.57932813348249 2.0763448380812335 1.2288819070198354 0.9568089892142682 1.1653902771193885 0.881762048747756 0.03125700816279464 0.14016552198775192 0.395679516920689 0.02130919870885018 0.010535339721891916 119.21882524638666 -2.0763448380812335 0.20858128790512032 GT(ph)PSQSPVVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GTPSQSPVVGR 11 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 GT(0.995)PS(0.005)QSPVVGR;GT(0.999)PS(0.001)QSPVVGR;GT(0.975)PS(0.025)QSPVVGR;GT(0.999)PS(0.001)QSPVVGR 174.72 0.00011935 1604820000.0 388199.0 462893.0 445370.0 423283.0 464529.0 479496.0 457656.0 398193.0 461141.0 460050.0 True False 386108.9797169637 478300.1136802729 508074.2247745641 476870.58439981577 523684.01467090315 446349.570132174 435517.43086430203 427908.1836430835 347498.9795228193 430689.2151313788 0.8964909409193909 1.1105458341564711 1.179677147521745 1.1072266675039673 1.2159208920779614 1.036361149642482 1.0112104402973046 0.9935428346227639 0.8068439313411112 1.0 18.716287672009422 1.9043399155381304 1.5250665130629046 0.9157911916397253 1.1041329791220518 0.3747697210709906 0.09333554253679831 0.3978140834482676 1.7275619995632425 0.06552836335374526 0.029160589514550042 80.23057699586236 -1.9043399155381304 0.18834178748232644 GT(ph)PTAENPEYLGLDVPV ddPTM_BT-474_Trastuzumab_2h_R1 3 GTPTAENPEYLGLDVPV 17 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 GT(0.898)PT(0.102)AENPEYLGLDVPV;GT(0.981)PT(0.019)AENPEYLGLDVPV;GT(0.856)PT(0.144)AENPEYLGLDVPV 153.39 1.9783e-06 695731000.0 489486.0 670029.0 631851.0 607647.0 682485.0 712743.0 752007.0 578992.0 521742.0 591743.0 True False 486850.6617630067 692330.5102239159 720810.1286526538 684575.0478965503 769395.41934448 663472.7540265521 715629.5484642859 622199.3231018039 393165.6750846159 553977.4551233301 0.8788275718812796 1.249744919799642 1.3011542653702077 1.2357453206180486 1.3888569150764305 1.1976529873022457 1.2918026570322572 1.1231491775478224 0.7097142157113356 1.0 19.079467739441252 1.4112687082592328 4.962690941654866 0.8596230996492996 1.2287295793906532 0.5053290816567242 0.14218125299897943 0.15272833500376534 6.214380393377099 0.09492615973234293 0.03459881804024004 25.779156810202025 -1.4112687082592328 0.3691064797413536 GT(ph)RESGQK ddPTM_BT-474_Trastuzumab_2h_R1 5 GTRESGQK 8 1 A0A1W2PQW7;A8K830-4;A8K830-2 A0A1W2PQW7 1 GT(0.5)RES(0.5)GQK;GT(0.5)RES(0.5)GQK;GT(0.5)RES(0.5)GQK;GT(0.5)RES(0.5)GQK;GT(0.5)RES(0.5)GQK 87.616 0.02457 2718050000.0 761235.0 2334850.0 2162910.0 2322160.0 1751680.0 1309630.0 1246830.0 1006689.0 677498.0 1915830.0 True False 757136.5953411593 2412564.0708033713 2467428.9276492624 2616145.2179035726 1974746.0649792112 1219098.3606374157 1186516.0695468597 1081813.245043162 510537.6959080873 1793560.0891754173 0.4221417503158481 1.345125867465382 1.3757157859058147 1.4586326009887607 1.1010202986213267 0.6797086799572417 0.6615424131635066 0.6031653199534127 0.28465045525338667 1.0 20.7743946496646 2.7441405692119853 3.5851639406523534 0.6134654788650995 1.1907736991104243 0.3812269358569813 0.3133637350274603 0.22657807736792884 6.370503715414303 0.10178170332776312 0.10218966041705319 554.8052591444701 -2.7441405692119853 0.5773082202453248 GT(ph)SPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK 45 2 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 GT(0.493)S(0.493)PRPPEGGLGYS(0.003)QLGDDDLKET(0.003)GFHLT(0.003)T(0.003)T(0.003)NQGASAAGPGFSLK;GT(0.411)S(0.411)PRPPEGGLGY(0.036)S(0.141)QLGDDDLKET(0.001)GFHLTTTNQGASAAGPGFSLK 68.071 0.0012071 1570110000.0 350250.0 347990.0 322440.0 324850.0 315780.0 422410.0 422810.0 400330.0 581300.0 433920.0 True False 348364.29291643307 359572.636785603 367836.7493012779 365975.9766923791 355992.71122530143 393209.7909461839 402357.0650089486 430204.65743454994 438046.4040209286 406226.85410239804 0.8575609647623653 0.8851523062898377 0.9054958961638634 0.9009152718400225 0.8763396797385679 0.9679561727031151 0.990473822559072 1.0590256480830975 1.0783295087392468 1.0 18.63192608827023 2.336657921571743 1.4946363762041952 1.0508554893080597 0.8853239028193992 0.8840439137838694 0.025330998749268686 0.11719337720657082 0.5250190984951301 0.013157274995935855 0.008661198673023169 217.09904926762306 -2.336657921571743 -0.1655315864886605 GT(ph)SPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF ddPTM_BT-474_Trastuzumab_2h_R1 1 GTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF 46 3 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 GT(0.317)S(0.317)PRPPEGGLGY(0.059)S(0.061)QLGDDDLKET(0.061)GFHLT(0.061)T(0.061)T(0.061)NQGAS(0.001)AAGPGFSLKF 51.82899999999999 0.0094098 518820000.0 60854.0 71510.0 77584.0 69093.0 67467.0 91312.0 74347.0 65987.0 129970.0 99559.0 True False 60526.368825515005 73890.16712129216 88507.15282778315 77840.16671573512 76058.52254176125 84999.81636532735 70750.55157687934 70911.2850151966 97940.63500877366 93205.05938325168 0.6493893059671306 0.7927699162495221 0.9495960134937406 0.8351495855569668 0.8160342694382582 0.9119656907873958 0.7590848827847294 0.7608093968763554 1.0508081391381308 1.0 16.508120649332614 -4.999999999998867 0.08428665104993739 1.5664719117876238 0.670533355200153 0.3209215671629968 0.09667626245626008 341.7733055449454 2.0249850842294257 35.328263666497655 2.9241388106036212 1.0000000000026096e-05 4.999999999998867 -0.8959385565874708 GTADVTHDLQEMKEESR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTADVTHDLQEMKEESR 17 1 P11166 P11166 SLC2A1 Solute carrier family 2, facilitated glucose transporter member 1 0 ; 100.77 0.00075193 134940000.0 150447.0 164565.0 161876.0 157039.0 169954.0 200045.0 186163.0 169543.0 269787.0 199468.0 False True 149637.01006823292 170042.44654335696 184666.73374858484 176920.1212984287 191596.63450372027 186216.36000527797 177157.5844782784 182195.15958190974 203301.60881058697 186737.7814668534 0.8013215584592024 0.910594766670397 0.9889093267468416 0.9474254214047876 1.0260196570758195 0.9972077345169275 0.948697061123244 0.9756737932235209 1.0887009967325423 1.0 17.510654322838924 5.116437217189576 1.0145196226035738 0.9964256476745676 0.5392012453564416 0.7238033115990041 0.03796273768525439 1.9214957597733702 0.9489500504106847 0.011391152440098345 1.1423583490233908 130748.6511394211 -5.116437217189576 -0.457224402318126 GTAFVTLLNGEQAEAAINAFHQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTAFVTLLNGEQAEAAINAFHQSR 24 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 0 169.08 1.6618e-20 0.0 77793.0 101620.0 149640.0 115510.0 119370.0 117740.0 148850.0 119790.0 130190.0 117230.0 False True 77374.1711316149 105002.36026941278 170708.01130580346 130133.55415649284 134571.0619385782 109600.91093014764 141649.55683778055 128729.33808129479 98106.41895662242 109748.28103434757 0.7050148795259886 0.9567563088897084 1.5554504334548758 1.1857457167439858 1.2261792227657937 0.9986571989755921 1.2906767696293022 1.172950836842782 0.8939221464973868 1.0 16.74383881772689 -4.999705269405134 0.0022062408704276552 0.7703731328108138 1.4659611939993422 0.0 0.22765968469223222 25330411.211224385 4230.381894771719 689519.376591958 644928.2864412811 1.0006788726039562e-05 4.999705269405134 0.6955880611885285 GTCADRDNLTR ddPTM_BT-474_Trastuzumab_2h_R1 5 GTCADRDNLTR 11 1 P55212;D6RBM3;D6RHU3 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 0 ;;;; 167.6 1.7379e-05 1518358000.0 1144200.0 1415206.0 1276372.0 1429995.0 1306002.0 1318199.0 1487816.0 1170578.0 1627500.0 1415001.0 False True 1138039.754332572 1462310.2761999073 1456074.0831756932 1611032.2203793076 1472313.6134196755 1227075.0058366733 1415844.6560709407 1257932.4744346424 1226424.4323826947 1324694.4247366947 0.8590960549703955 1.1038849782209705 1.0991773317571805 1.2161538467254647 1.1114364082209545 0.9263079718030633 1.0688084962329056 0.9496019994835244 0.9258168597082057 1.0 20.33722817219996 2.7474518041974507 24.84574481416825 0.9771568730751012 1.088247893292654 0.2375507254852457 0.09201885044831438 863.0910431167512 2411842.2723277537 0.028720480408169744 0.03005222052015641 559.0514834250808 -2.7474518041974507 0.1110910202175528 GTCSGFEPHSWR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTCSGFEPHSWR 12 0 Q9NZU5;F8WB09;C9IYS1;H7C3D2 Q9NZU5 LMCD1 LIM and cysteine-rich domains protein 1 0 ; 178.95 2.1335e-05 535950000.0 451610.0 606320.0 584940.0 591770.0 559740.0 549340.0 577760.0 516850.0 654470.0 574680.0 False True 449178.581938588 626500.9946718195 667294.4676103767 666688.0213244556 631019.5711610926 511365.41880726506 549811.5415424664 555419.9715111216 493184.63794869673 538003.4303916988 0.8348991039175326 1.1644925650672693 1.2403163807423052 1.2391891643498754 1.17289135257311 0.9504872830178058 1.0219480220454553 1.0323725465964826 0.9166942255175374 1.0 19.037255846091043 2.7419096289009173 24.55988204416 0.9932421999491554 1.1444091050146346 0.2930997891068359 0.11192897265132618 300.35954872366324 2202677.548167177 0.03568438758848254 0.03646227698882449 551.9625710139946 -2.7419096289009173 0.15116690506547914 GTCSRPDTECK ddPTM_BT-474_Trastuzumab_2h_R1 4 GTCSRPDTECK 11 1 H7C4T5;C9JP00;A0A0A0MQX8;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;Q9NR56-3;Q9NR56-4 H7C4T5 MBNL1 Muscleblind-like protein 1 0 ;;; 138.42 5.2773999999999986e-05 963929000.0 880009.0 897160.0 790509.0 824584.0 840694.0 1012114.0 901619.0 891559.0 1263327.0 973906.0 False True 875271.1293221909 927021.4282553274 901805.7959725974 928976.2498534976 947751.3977162683 942148.9414400856 858004.244450943 958091.6598248698 951996.9885645055 911750.4852771241 0.9599897597599354 1.0167490374009087 0.98909275128984 1.0188930687227853 1.0394854875544177 1.03334076225221 0.9410515906554795 1.0508265970745938 1.044142014660018 1.0 19.79827953686956 6.2164737971556425 1.021669506869158 1.017501220811285 3.970539791240336e-08 0.21687923133674136 0.03085793168436901 52.13544168220796 3.600105668691602 0.009091068333362162 108.94359221031382 1646166.6430548162 -6.2164737971556425 -1.0175011811058872 GTDDS(ph)PKDSQEDLQER ddPTM_BT-474_Trastuzumab_2h_R1 3 GTDDSPKDSQEDLQER 16 1 Q969E4;Q5H9L2;Q6IPX3-2;Q6IPX3 Q969E4 TCEAL3;TCEAL5;TCEAL6 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5;Transcription elongation factor A protein-like 6 1 GT(0.001)DDS(0.999)PKDSQEDLQER;GTDDS(1)PKDSQEDLQER;GTDDS(1)PKDSQEDLQER 267.92 1.2758e-27 2419300000.0 1956320.0 1559370.0 1313730.0 1434101.0 1448400.0 1891230.0 1918880.0 1753490.0 2503300.0 1767600.0 True False 1945787.390487587 1611272.6877909284 1498691.7648541392 1615658.0395583133 1632845.1546606051 1760493.7215765514 1826056.4435665458 1884344.3278418018 1886395.2575014469 1654790.2546815036 1.1758513714851986 0.9737020647979637 0.9056687157869391 0.9763521600320748 0.9867384401383713 1.0638772597288424 1.1034972186961578 1.1387209481750786 1.1399603376710241 1.0 20.658216935778253 2.521346456026124 2.7829494283173486 1.110176450869593 0.9950483822040945 0.24236230194868014 0.07452644682007366 0.3221031687824151 4.990951717596181 0.027347225057344753 0.024012018046297573 332.1593301607245 -2.521346456026124 -0.11512806866549852 GTDIMYTGTLDCWR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTDIMYTGTLDCWR 14 0 P05141 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed 0 91.313 0.012574 101670000.0 47955.0 56155.0 51448.0 52222.0 57257.0 78680.0 44513.0 36811.0 63515.0 65947.0 False True 47696.81560830137 58024.08522858568 58691.4312059675 58833.29984555772 64548.339561172565 73241.03679279788 42359.73613382689 39558.02374247051 47862.57930739596 61738.205999932776 0.7725656234383179 0.9398408050381131 0.9506500918739266 0.9529479986124277 1.0455169293588293 1.1863162462621222 0.6861186755875772 0.640738147501623 0.775250568625983 1.0 15.91387594101554 2.209357238680681 24.995666360975864 0.7322303731501776 0.9742032401449803 0.33122949775714305 0.13303051857972992 198.6149067734071 169996.67789341722 0.04996088682248272 0.036904343331037384 161.941157328856 -2.209357238680681 0.2419728669948027 GTDTQTPAVLS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 5 GTDTQTPAVLSPSK 14 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 GTDTQTPAVLS(0.996)PS(0.004)K;GTDTQTPAVLS(1)PSK;GTDTQTPAVLS(0.985)PS(0.015)K;GTDTQTPAVLS(1)PSK;GTDTQTPAVLS(0.999)PS(0.001)K 347.39 8.678899999999996e-82 3653780000.0 4664510.0 3530040.0 3504300.0 2834870.0 2436530.0 4361680.0 4478960.0 3761850.0 6185370.0 4584220.0 True False 4639396.796435783 3647535.2474457547 3997674.9800783703 3193764.251334231 2746807.6530552395 4060167.3278903267 4262295.593511229 4042578.3492872417 4661068.443211652 4291651.1548518 1.081028403529688 0.8499141975512481 0.9315004495551593 0.7441807677503366 0.6400351645426532 0.9460618259478579 0.9931598444791153 0.9419634083532218 1.0860781258845371 1.0 22.03310138129486 2.491930406626794 24.527689965076416 0.9908946735402537 0.842583466992711 0.29697644277242463 0.1127240256052012 730.1026500790302 1209235.7070167537 0.03864718977074779 0.035243849694564705 310.406213887903 -2.491930406626794 -0.1483112065475427 GTDTQTPAVLS(ph)PSKTQATLKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTDTQTPAVLSPSKTQATLKPK 22 2 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 GTDTQTPAVLS(0.999)PS(0.001)KTQATLKPK;GTDTQTPAVLS(0.996)PS(0.004)KTQATLKPK 214.19 7.966799999999997e-26 2996400000.0 2346370.0 1511410.0 1815630.0 1562350.0 1216600.0 2524510.0 2568400.0 2141840.0 4111600.0 2779630.0 True False 2333737.404626215 1561716.368183363 2071254.9222611347 1760143.3498086461 1371526.7986468473 2349996.565757322 2444156.6797591937 2301674.9768431457 3098351.272617324 2602231.6336390316 0.8968215490343006 0.6001450247530102 0.7959533254019495 0.6763976454114554 0.5270579224835826 0.9030697096211312 0.9392540802915451 0.8845004215187487 1.190651605554616 1.0 21.311317956371727 2.5464149891614527 6.112012650515175 0.9738431608028848 0.6979046398660003 0.5865417678484574 0.12059504795666949 0.17082269307313355 11.7838154170911 0.0387287035209786 0.036150343780801904 351.8965339049008 -2.5464149891614527 -0.27593852093688453 GTEAPAVVT(ph)EEEDDDEETAPPVIAPRPDHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK 31 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK 246.3 4.7454e-46 1232490000.0 1065510.0 1045370.0 990910.0 903770.0 968520.0 1258550.0 1162100.0 1141340.0 1600800.0 1342720.0 True False 1059773.4125492899 1080164.50851049 1130421.514855879 1018187.189334375 1091855.2811322068 1171549.4008080296 1105884.7833468916 1226512.586407087 1206304.289621026 1257026.4600395742 0.8430796377316717 0.8593013296446312 0.8992821955556055 0.8099966243370247 0.8686016689718946 0.9320005887315581 0.87976253364792 0.9757253529639094 0.9596490829501303 1.0 20.261583587711154 1.9078137100975079 0.7803945241838804 0.9975463745748191 0.854109293376527 0.7513893576959954 0.029343514860616822 0.2997912601465767 0.3444781130385526 0.025233188038276455 0.01251316872964684 80.87489132502941 -1.9078137100975079 -0.14343708119829213 GTEAS(ph)PPQNNS(ph)GSSSPVFTFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTEASPPQNNSGSSSPVFTFR 21 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 2 GT(0.05)EAS(0.949)PPQNNS(0.937)GS(0.049)S(0.012)S(0.003)PVFTFR 66.536 0.033 56598000.0 66674.0 75746.0 65304.0 73587.0 66715.0 68730.0 69284.0 57093.0 67746.0 67149.0 True False 66315.03459217782 78267.15982057617 74498.23556745649 82903.106654955 75210.7597992146 63978.856873017256 65932.46822941743 61353.56957237966 51050.906049891295 62863.49333084884 1.0549053366023364 1.245033574711769 1.1850794733180723 1.3187798237466415 1.1964139409717884 1.0177426274467167 1.0488196683950837 0.9759809123154755 0.8120914595250344 1.0 15.9399348246269 2.386673543512546 1.3497690016418984 0.9344980233572877 1.2091386737419716 0.6602508345991047 0.08305127867145913 0.25975364416900126 0.9484433067817806 0.045844816594233714 0.030870612503828374 243.59790195519864 -2.386673543512546 0.2746406503846839 GTEAS(ph)PPQNNSGSSSPVFTFR ddPTM_BT-474_Trastuzumab_2h_R1 6 GTEASPPQNNSGSSSPVFTFR 21 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 GTEAS(1)PPQNNSGSSSPVFTFR;GT(0.001)EAS(0.999)PPQNNSGSSSPVFTFR;GTEAS(1)PPQNNSGSSSPVFTFR;GTEAS(1)PPQNNSGSSSPVFTFR;GTEAS(1)PPQNNSGSSSPVFTFR;GTEAS(1)PPQNNSGSSSPVFTFR 338.94 1.9861999999999994e-80 1676810000.0 478774.0 530959.0 484916.0 551197.0 522819.0 552710.0 542531.0 495056.0 562149.0 548737.0 True False 476196.33398079174 548631.649343507 553187.9578345693 620978.4836844988 589396.9006590047 514502.45863939216 516286.702860315 531999.592563431 423614.91136067576 513716.1348626185 0.9269639430502595 1.0679665521703456 1.076835863803473 1.2087969241039414 1.1473202040201156 1.0015306581269516 1.005003868524363 1.0355905848775842 0.8246089281855276 1.0 18.970611861185198 1.8333600558688876 1.279126440549686 0.9334946619446055 1.0832634668806582 0.3035924166459024 0.08532150103619952 0.5570221244939237 1.6985093280764243 0.06953541234585432 0.028756554298840633 68.1333990870049 -1.8333600558688876 0.1497688049360527 GTEASPPQNNSGSSS(ph)PVFTFR ddPTM_BT-474_Trastuzumab_2h_R1 6 GTEASPPQNNSGSSSPVFTFR 21 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 GTEASPPQNNSGSS(0.063)S(0.937)PVFTFR;GTEASPPQNNSGSS(0.019)S(0.98)PVFTFR;GTEASPPQNNSGSS(0.006)S(0.994)PVFTFR;GTEASPPQNNSGSS(0.038)S(0.962)PVFTFR;GTEASPPQNNSGSS(0.005)S(0.995)PVFTFR;GTEASPPQNNSGSS(0.401)S(0.599)PVFTFR 406.46 1.485399999999999e-151 1448080000.0 897412.0 1027820.0 1002410.0 1035262.0 1033939.0 1098196.0 1166047.0 1073452.0 1229160.0 1229569.0 True False 892580.4335038457 1062030.3673696904 1143540.614896087 1166326.0630521956 1165605.003013416 1022280.2953953159 1109640.8518778887 1153558.4391188084 926249.987900163 1151096.8537330185 0.7754173166308278 0.9226246809080534 0.9934356185472781 1.0132301719614545 1.0126037606942868 0.8880923373911159 0.9639856527096851 1.0021384693892672 0.8046672918063542 1.0 20.134577796818355 4.705191347082602 3.1349594112452825 0.9632212331344473 0.7540869087356176 0.43274318599604844 0.06295476697700335 0.2818834498758267 4.406758269295284 0.014946741531031428 0.13874016529056188 50721.413401769736 -4.705191347082602 -0.20913432439882973 GTEDELDKYSEALK ddPTM_BT-474_Trastuzumab_2h_R1 1 GTEDELDKYSEALK 14 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;D6RGJ6;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;H0YKP3;A0A087WTJ7 J3KN67;P09493-3 TPM3;TPM1 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain 0 83.69200000000002 0.0076876 198310000.0 309070.0 224930.0 192490.0 171770.0 206370.0 305180.0 268770.0 239750.0 376570.0 265250.0 False True 307406.00146090495 232416.6590769436 219590.91884692662 193516.0643880253 232649.9962491777 284083.6249164469 255768.56829889328 257641.36242583173 283769.3692794785 248321.51790804966 1.2379354155475706 0.9359505411971771 0.8843008076659646 0.779296397743839 0.9368901986791377 1.1440153366879768 1.0299895492488136 1.0375313609400256 1.1427498175351631 1.0 17.921849755823374 2.763410143482157 23.386665417099657 1.066759490877137 0.9401481746265248 0.19257547452536639 0.11666355109532575 551.0113076723767 518572.2248665435 0.036530155326142434 0.03872352047876588 579.9761617185463 -2.763410143482157 -0.12661131625061217 GTEDELDKYSEALKDAQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GTEDELDKYSEALKDAQEK 19 2 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;D6RGJ6;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;H0YKP3;A0A087WTJ7 J3KN67;P09493-3 TPM3;TPM1 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain 0 80.238 0.0042643 149110000.0 253900.0 151180.0 114480.0 117550.0 121240.0 223420.0 202590.0 216470.0 337220.0 175080.0 False True 252533.03061094202 156211.93490975996 130597.78892200188 132431.81794732693 136679.19535421958 207975.50127410892 192789.9477310447 232624.0906123873 254116.6495164935 163906.2445064709 1.5407163489794449 0.953056641497224 0.7967834862865519 0.8079729869114207 0.8338864438372486 1.2688686870981185 1.1762208835395134 1.4192509340497 1.5503780852379982 1.0 17.322511293772934 2.631564255029802 5.407870547961157 1.314195936903673 0.9650104714025035 0.2668087239546313 0.24232435232487415 0.2830043605502013 11.944132551233567 0.08086161593582462 0.07601970704518482 428.1187562153508 -2.631564255029802 -0.3491854655011696 GTEDITSPHGIPLDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 GTEDITSPHGIPLDLLDR 18 0 Q9Y265;H7C4G5;Q9Y265-2;E7ETR0;J3QLR1 Q9Y265 RUVBL1 RuvB-like 1 0 ;;;; 191.37 2.2871e-14 2166017000.0 1274091.0 1901390.0 1720561.0 1934710.0 1869917.0 1656340.0 1711108.0 1567413.0 1771680.0 1705990.0 False True 1267231.435620818 1964676.616735474 1962801.0334156922 2179644.0876297136 2108039.8460836047 1541841.1144049666 1628335.1689726657 1684381.317221943 1335073.2032957124 1597112.2576284772 0.7934516998213431 1.230143095672427 1.2289687365684736 1.3647406919700356 1.3199071236318696 0.9653930755590207 1.019549603476559 1.0546417818638811 0.8359294701539253 1.0 20.6070342896075 2.7215273078940756 24.352851858138287 0.9884705717575556 1.2019714771937147 0.3175199965541823 0.1543024223409003 735.8635195232038 1052076.6021346827 0.0508691359883818 0.04808128686793085 526.6563293443626 -2.7215273078940756 0.21350090543615907 GTELDCGIETDSGVDDDMACHK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTELDCGIETDSGVDDDMACHK 22 0 P42574 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 0 ; 214.3 1.5178e-25 1242020000.0 465960.0 442210.0 371500.0 379800.0 360160.0 465370.0 430820.0 412170.0 500420.0 435700.0 False True 463451.323133023 456928.6925284097 423803.97086411406 427882.6410582284 406024.2411644327 433200.0672631463 409979.59070777736 442928.2183568512 377098.1962844539 407893.25297846313 1.1362073771725107 1.1202163536461724 1.039007063170253 1.0490064200223992 0.9954178898513698 1.0620427381426174 1.0051149111050002 1.0858924856504992 0.9245021670029064 1.0 18.637832117936416 4.244462215122272 2.376513823160002 1.0249913292224095 1.1385268605415637 0.5143846048359975 0.04208868474207075 0.24174348686754016 2.6471502809056977 0.010363928188288192 0.03700716356405181 17557.48132381372 -4.244462215122272 0.11353553131915417 GTEPS(ph)PGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 GT(0.001)EPS(0.997)PGGT(0.002)PQPS(0.018)RPVS(0.982)PAGPPEGVPEEAQPPR;GTEPS(1)PGGTPQPS(0.008)RPVS(0.992)PAGPPEGVPEEAQPPR 235.17 5.8796e-47 1185200000.0 429370.0 663010.0 642790.0 690930.0 651200.0 667890.0 616000.0 505260.0 511020.0 588030.0 True False 427058.31962749205 685077.8870519913 733289.2447691615 778401.6671573508 734126.4600352024 621720.3363439473 586201.7266514801 542965.0668582943 385085.96831717686 550501.4219621888 0.7757624278340639 1.2444616121246748 1.3320387841242078 1.4139866603483822 1.3335596072004805 1.1293709907740261 1.0648505222058142 0.9863100170077088 0.6995185715317308 1.0 19.070386764757153 1.9007745585135543 1.5628473152629878 0.8633082497811713 1.232032378423942 0.3802807364787444 0.17922883854861937 0.3922526950159006 1.7905557062747792 0.1280544351027796 0.057120766437754135 79.57461727759654 -1.9007745585135543 0.3687241286427707 GTEPSPGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_BT-474_Trastuzumab_2h_R1 5 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 GTEPSPGGTPQPS(0.008)RPVS(0.992)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPS(0.006)RPVS(0.994)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR 309.64 2.4646999999999992e-104 4765890000.0 287168.0 376011.0 359770.0 389059.0 375757.0 400375.0 374880.0 317993.0 390285.0 381409.0 True False 285621.91939536383 388526.2988315501 410422.4888231015 438313.8295088817 423607.42666377034 372698.0186313738 356745.62221932947 341723.25239573524 294104.4913010635 357067.1510793262 0.7999109370100245 1.0881042897873148 1.1494266206860395 1.2275389326180433 1.1863522740283143 1.0437757085881447 0.9990995283127422 0.9570279746058685 0.8236671741213324 1.0 18.44583589160137 2.035711734866483 1.8212982040180334 0.9182270684255223 1.0996774005794911 0.2682916043366995 0.11600909808609247 0.46177118781173815 2.88072341787979 0.0714657303961925 0.037225154862725734 108.57047424487646 -2.035711734866483 0.18145033215396889 GTEVQVDDIKR ddPTM_BT-474_Trastuzumab_2h_R1 4 GTEVQVDDIKR 11 1 Q9Y230;Q9Y230-2 Q9Y230 RUVBL2 RuvB-like 2 0 ;;; 179.35 1.1449000000000003e-05 2552920000.0 1054979.0 1111868.0 992806.0 980009.0 983263.0 1096348.0 1154667.0 1017593.0 1400360.0 1109592.0 False True 1049299.1102831871 1148875.8542416003 1132584.4551755504 1104078.0389174127 1108475.7147936015 1020560.0432855934 1098811.3459537092 1093530.9568925535 1055260.04186263 1038776.8885904952 1.0101294337679858 1.1059890404382187 1.0903057890634644 1.0628634994137423 1.0670970128125201 0.9824631780847377 1.0577934087893255 1.052710133334169 1.0158678475168048 1.0 19.98645439075695 2.960116276448336 24.93225950734321 1.0297264578591068 1.0708824343527688 0.32501012420426245 0.03160777588200155 652.6599097619625 407992.8215430506 0.009561294325665347 0.010142717344020544 912.2550505606011 -2.960116276448336 0.04115597649366198 GTFHDDRDDGVDYWAK ddPTM_BT-474_Trastuzumab_2h_R1 8 GTFHDDRDDGVDYWAK 16 1 E9PK91;Q9NYF8-3;H0YF63 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 0 ;;;;;;; 118.19 0.00017508 6039348000.0 5471540.0 6197540.0 5973720.0 6063240.0 5939410.0 6335550.0 6264390.0 5980370.0 7735100.0 6354680.0 False True 5442081.836585237 6403821.372407961 6814767.851494958 6830845.562321989 6695758.657858847 5897588.340780507 5961357.523406286 6426655.577103531 5828888.25002973 5949118.881884741 0.9147710685621953 1.0764319052200828 1.145508769751794 1.1482113062359762 1.1255042621937927 0.991338122144248 1.0020572191890151 1.08027015507673 0.979790178303359 1.0 22.504244577430867 2.7346781098067336 24.982473683959103 1.0202293465503425 1.0889685509564966 0.20991740185991659 0.06734810474764236 599.2126989807712 3855692.6649492383 0.022543616779842252 0.02196292158037724 542.8478346300936 -2.7346781098067336 0.06873920440615411 GTFIADSHQNFALFFQLVDVNTGAELTPHQTFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTFIADSHQNFALFFQLVDVNTGAELTPHQTFVR 34 0 P04844-2;P04844 P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 0 ; 177.86 5.5658e-20 139426000.0 88616.0 124061.6 129295.0 127966.2 143357.0 147412.0 148448.0 122357.6 166336.0 139888.0 False True 88138.90130216318 128190.91535917927 147498.61214771343 144166.70779932995 161612.66420649042 137221.75541052283 141267.0031135698 131488.54543130324 125344.72158820769 130960.22807585774 0.6730203711245019 0.9788537882274123 1.126285547260012 1.1008434386340749 1.234059122994788 1.0478124345586672 1.0787015660337882 1.0040341816993437 0.9571205199459693 1.0 16.998769213912084 4.702853943475362 2.9428428782211316 1.07161889001268 0.6220385889261261 0.7211409086576053 0.07365968205972333 0.18873152383624864 2.4700679673510764 0.019197828996022043 0.19198320420754247 50449.160468175935 -4.702853943475362 -0.4495803010865539 GTFPDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTFPDAR 7 0 Q15233;Q15233-2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 84.09700000000002 0.050705 473140000.0 913880.0 1274800.0 1014400.0 1201700.0 1121600.0 1140400.0 1144800.0 1037400.0 1206300.0 1148300.0 False True 908959.7716216141 1317230.947367127 1157218.702677138 1353835.0967869216 1264429.1117559627 1061566.832212846 1089421.6504393113 1114816.0558104618 909023.5285918553 1075014.5108909102 0.8455325601775557 1.2253145739172226 1.076467983411779 1.2593644858476756 1.1761972503125344 0.9874907003190874 1.013401809373216 1.037024193177231 0.8455918681865131 1.0 20.03592470323106 2.7250191028703354 22.927196670889654 0.9868437941775684 1.1283209734392876 0.2612865881798858 0.11613756309010327 356.4372440671493 603483.2014779628 0.036323605928121415 0.03446432888598192 530.9077962194829 -2.7250191028703354 0.1414771792617192 GTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 GT(0.471)FS(0.529)DQELDAQSLDDEDDNMHHAVYPAVNR;GT(0.177)FS(0.823)DQELDAQSLDDEDDNMHHAVYPAVNR;GT(0.03)FS(0.97)DQELDAQSLDDEDDNMHHAVYPAVNR 221.65 1.9714e-34 1830370000.0 189719.4 240477.5 219158.2 236337.3 188468.2 225168.0 213005.6 122917.0 184263.6 191938.2 True False 188697.97183020707 248481.64821578155 250013.76960277694 266257.5779477909 212468.50813145976 209602.66614845855 202701.7053675889 132089.69069987917 138854.30478574027 179688.53974943966 1.0501391579748507 1.3828463883243083 1.3913729275745677 1.4817727291849796 1.182426594527002 1.1664776531699328 1.1280725284441575 0.7351035902682885 0.7727499203864685 1.0 17.4551388734133 2.0919708960331596 1.6510520010022036 0.8087256635612512 1.311180884753535 0.6648799209672356 0.1378348301908036 0.20600490331745308 1.0688431698672858 0.08299170226038417 0.04420343526485273 123.58646099932363 -2.0919708960331596 0.5024552211922837 GTGARPYTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTGARPYTGK 10 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 79.65899999999998 0.024024 2473900000.0 3157400.0 3976600.0 3082100.0 3862600.0 4037200.0 4096600.0 4405200.0 4198200.0 6290700.0 4760300.0 False True 3140400.9092201157 4108958.727094533 3516032.8899065563 4351604.763958702 4551313.489640841 3813411.684359129 4192103.6465017847 4511491.00202765 4740441.276061333 4456493.578502131 0.7046797788219037 0.9220160771499625 0.7889684632033798 0.9764638245975701 1.021276797434673 0.8556977850826057 0.9406731037882007 1.012340963261077 1.0637154957271675 1.0 22.087477596396756 6.281940224143296 0.37061310379932044 1.007241414312456 6.788753493001468e-17 0.5933411254315735 0.06879687140664074 13.750843020940557 0.6090163850108814 0.05545113928511061 7.794546143946963 1913992.466887863 -6.281940224143296 -1.007241414312456 GTGHVSSGYVER ddPTM_BT-474_Trastuzumab_2h_R1 2 GTGHVSSGYVER 12 0 Q6IN85-2;Q6IN85;G3V5Z3;G3V231;H0YIY8;Q6IN85-5;Q6IN85-4;G3V4R3;G3V5A2 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 0 ; 118.61 0.00060734 397380000.0 119513.0 217730.0 239430.0 287610.0 266880.0 203970.0 234950.0 211870.0 185296.0 258430.0 False True 118869.55528714253 224977.0114294357 273139.6628371323 324021.3965106826 300865.5860783085 189870.03399373378 223584.5709038398 227680.81525406078 139632.28363919133 241936.77614694563 0.49132487082056714 0.9299000136002099 1.1289712427648242 1.3392812852638867 1.2435711133704253 0.7847919486139306 0.9241446235029634 0.9410756763815594 0.5771436896157639 1.0 17.88427056054717 2.7097089937323826 24.902987550966333 0.8566874368816303 1.044294402024184 0.12322258875211389 0.23838709453866314 1554.6918471657746 1341915.1222989298 0.08157631187992863 0.07692223892154945 512.5178477683687 -2.7097089937323826 0.1876069651425537 GTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 GT(0.018)GQS(0.982)DDS(1)DIWDDTALIK;GT(0.133)GQS(0.867)DDS(0.999)DIWDDT(0.001)ALIK 152.13 6.247099999999999e-08 168122000.0 420811.0 337788.0 310946.0 304243.0 336579.0 405361.0 357344.0 413212.0 515602.0 427393.0 True False 418545.40033249726 349031.06938284193 354724.4940089169 342760.1326052621 379440.3405899693 377339.3481871548 340057.90553335537 444047.9776880209 388538.79581283143 400116.4128304434 1.0460590640900889 0.87232379925077 0.8865532195982119 0.8566510185887148 0.9483248585225221 0.9430739057111841 0.8498974164238073 1.1097969577073918 0.971064378649925 1.0 18.61006028388371 1.7427023676556346 24.99999999999992 1.03322987166004 0.9121372643105623 0.395329902854315 0.06342329624399398 0.6652083238063184 4034.3307368638957 0.02793691237814713 0.015492511946652649 55.29710151324661 -1.7427023676556346 -0.1210926073494778 GTGQS(ph)DDSDIWDDTALIK ddPTM_BT-474_Trastuzumab_2h_R1 7 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 GTGQS(1)DDSDIWDDTALIK;GT(0.002)GQS(0.998)DDSDIWDDTALIK;GT(0.002)GQS(0.998)DDSDIWDDTALIK;GT(0.007)GQS(0.993)DDSDIWDDTALIK;GTGQS(1)DDSDIWDDTALIK;GT(0.001)GQS(0.999)DDSDIWDDTALIK;GT(0.051)GQS(0.947)DDS(0.002)DIWDDTALIK 325.27 2.9906999999999996e-62 2789216000.0 2378540.0 2307660.0 2073468.0 1978822.0 2089499.0 2500210.0 2521100.0 2399200.0 2757170.0 2523050.0 True False 2365734.2049206374 2384469.0680900696 2365394.2714930624 2229340.6623068084 2355584.3122191266 2327376.367561276 2399144.76146274 2578240.486890743 2077702.397685161 2362026.7889082185 1.0015695910096483 1.0095012805473829 1.0014256750180215 0.9438253083222902 0.9972724794149902 0.9853302166132677 1.0157144587558544 1.0915373606251364 0.8796269404910185 1.0 21.171593896466472 2.2348538081595004 24.266798649325583 1.0140954987767137 0.9894908355376367 0.0 0.05208867384058692 241.92836724490098 1583778.5030378485 0.019012572289249845 0.014600945341330919 171.7330203611257 -2.2348538081595004 -0.02460466323907695 GTHDLWDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTHDLWDSR 9 0 Q04446;E9PGM4 Q04446 GBE1 1,4-alpha-glucan-branching enzyme 0 103.7 0.0033798 182330000.0 79496.0 98117.0 101270.0 86547.0 96327.0 102760.0 91517.0 78949.0 87919.0 93607.0 False True 79068.00236883583 101382.76503202095 115527.93574538034 97503.84132613623 108593.6724751397 95656.44307102084 87089.97308110962 84840.57527489886 66252.54050424219 87632.92111901536 0.9022636853729046 1.1569027226004684 1.318316612868358 1.1126394062993181 1.2391880937947657 1.0915583076491155 0.9938042914583625 0.9681358808030126 0.7560234174353699 1.0 16.419185329430256 2.0380420097529517 1.6299804850545405 0.8928451972461513 1.1544438770228673 0.4486575047471951 0.11629981931877718 0.33628985150896457 1.6777868124280886 0.07254833078331319 0.03666557078212432 109.15459177040842 -2.0380420097529517 0.261598679776716 GTHDRDPSEKPPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GTHDRDPSEKPPR 13 2 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 0 ;;;;; 180.84 7.5421e-06 297116000.0 231140.0 273084.0 255321.0 258094.0 264804.0 270163.0 278978.0 245288.0 338100.0 279140.0 False True 229895.56792206832 282173.43585723575 291267.9775100843 290768.67393702595 298525.2197837252 251487.26770529585 265482.76834054646 263592.63610722637 254779.78530788887 261325.04621622246 0.8797303253200264 1.0797795310586615 1.1145811766893816 1.112670515693477 1.1423521170516624 0.9623542455904255 1.0159101555114005 1.0086772772982797 0.9749535645239378 1.0 17.99548587816203 2.720221623367544 24.986915786792515 0.9961802309645488 1.071909573944399 0.21747957401897822 0.0689884646490347 1293.0850040989621 1761827.6021020731 0.022730171366514305 0.02146349832138214 525.0753413381359 -2.720221623367544 0.07572934297985012 GTHHSQNPSPGSS(ph)SPRPSVVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTHHSQNPSPGSSSPRPSVVGR 22 1 J3KT00;A0A1W2PQI7;A0A1W2PPP3;Q86VV8-4;Q86VV8-3;Q86VV8;J3KTD2;Q86VV8-2 J3KT00 RTTN Rotatin 1 GTHHSQNPS(0.008)PGS(0.245)S(0.373)S(0.373)PRPSVVGR 138.54 8.0048e-07 37714000.0 17607.0 35699.0 39704.0 40931.0 41099.0 37689.0 37130.0 20229.0 23711.0 32753.0 True False 17512.205868321606 36887.21963449881 45293.97808664542 46112.86040325002 46332.71403714185 35083.64814036298 35333.88004962578 21738.59070078064 17867.74176112203 30662.67549874591 0.5711245213757634 1.2030006851818096 1.4771697951960494 1.5038759551538814 1.5110460285514498 1.144180916039042 1.1523417143122727 0.7089593568463959 0.5827195921586429 1.0 14.904195965664437 1.8476785639412958 2.9929092027507473 0.7297430028410089 1.2652725843224495 0.3651163262955469 0.27575516934891486 0.2604335067815317 4.136561365953014 0.15551056474849315 0.07968022418778391 70.41716947210023 -1.8476785639412958 0.5355295814814406 GTHTGVWVGVSGSETSEALSR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTHTGVWVGVSGSETSEALSR 21 0 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 189.51 2.1361e-17 4404040000.0 389689.1 434082.8 421073.1 465018.0 437392.0 490280.3 443779.9 369517.8 470576.5 462860.3 False True 387591.05718412914 448530.98358940624 480356.53244700446 523889.23112062993 493091.2785745038 456388.37685668527 422312.57083315135 397093.0946093685 354609.22697704146 433320.15937935986 0.8944680943053098 1.035102969203724 1.1085487763482187 1.209011904433413 1.137937545487737 1.053235966474225 0.9745971003011386 0.916396539635084 0.8183538644611982 1.0 18.725073831194493 2.086298982610912 2.2145389645894986 0.9034465050529065 1.0842224657780293 0.4187231522829866 0.08630757608004216 0.3014400713979185 2.8600073660755303 0.0473390540634771 0.027568082376281392 121.98290804033009 -2.086298982610912 0.1807759607251228 GTILISSEEGETEANNHKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTILISSEEGETEANNHKK 19 1 Q9UBT2;Q9UBT2-2;U3KQ93;K7ESK7 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 ; 172.37 5.5053e-12 491070000.0 243380.0 211756.0 179581.0 158630.0 163905.0 236073.0 223586.0 212422.0 313890.0 250710.0 False True 242069.66912205992 218804.1704507946 204864.4438539663 178712.54173529978 184777.3302089522 219753.82916606741 212770.2909985355 228274.00829705966 236536.01541050943 234709.47315636987 1.0313587511688822 0.9322340828783731 0.8728426726836033 0.7614202329883659 0.7872597885550554 0.9362801859286753 0.9065262178692809 0.9725811456488476 1.0077821411704275 1.0 17.840516546378453 1.7751596378822607 1.5681864416071933 1.0054621779259953 0.8773795666066799 0.314328413885526 0.07164067808652994 0.4799871732285065 2.275619551660161 0.059152903595337106 0.023912400028739258 59.588113715169534 -1.7751596378822607 -0.12808261131931542 GTINFLHADCDKFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTINFLHADCDKFR 14 1 Q9BS26 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 0 92.575 0.0029466 364380000.0 677830.0 1191200.0 1174500.0 1192100.0 1119600.0 1017100.0 917950.0 844920.0 906720.0 1073100.0 False True 674180.6385939929 1230848.3719043932 1339859.3910629908 1343019.7377712321 1262174.4236108917 946790.2709958665 873545.2515904651 907972.2208168257 683271.0054255228 1004613.839272867 0.6710843632036371 1.2251955167124449 1.3337058864655622 1.3368517188089915 1.2563776988424182 0.9424419951064453 0.8695333644047065 0.9038022226271641 0.6801329811662459 1.0 19.938209623737627 2.6005511786726365 4.162915955519794 0.8651274664906172 1.1860779362856495 0.35623144788274397 0.19265779084148324 0.25346163979050673 7.374291563073331 0.06562209885182194 0.06116424544937944 398.61274336638434 -2.6005511786726365 0.3209504697950323 GTIVLASPGWTTHSISDGKDLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GTIVLASPGWTTHSISDGKDLEK 23 1 Q5JVP2;F2Z3J9;Q14914-2;Q14914 Q5JVP2 PTGR1 Prostaglandin reductase 1 0 141.1 1.1249e-07 237540000.0 64725.0 59232.0 55602.0 59938.0 42547.0 78305.0 81405.0 69918.0 110230.0 77361.0 False True 64376.52779162357 61203.501313499866 63430.27829875227 67526.14465441837 47965.108254173436 72891.95966014285 77467.12915270086 75135.63619641015 83065.29350632534 72423.75474791566 0.8888869130811851 0.8450749554000622 0.8758214555366971 0.9323756395875312 0.6622841969616863 1.0064647975496004 1.0696370192672224 1.0374446403384316 1.1469343697444234 1.0 16.144175353598786 2.497198814972212 23.475152690402343 1.060411296428588 0.8467674875914387 0.6714782763574485 0.07465402342746627 200.09123958098562 233951.5625663557 0.023275329882050364 0.02165048941455838 314.19467114277427 -2.497198814972212 -0.21364380883714917 GTLDEEDEEADS(ph)DTDDIDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 GTLDEEDEEADS(0.98)DT(0.02)DDIDHR 260.97 2.4413999999999997e-36 1008300000.0 413040.0 517480.0 463460.0 492840.0 488150.0 473890.0 459310.0 405400.0 532010.0 461800.0 True False 410816.2385330576 534704.0089767346 528711.1395334654 555233.493467977 550313.0090082681 441131.09971706924 437091.42056540825 435653.0065794887 400903.2640687665 432327.5286331286 0.9502430711084202 1.2368030568566506 1.2229411835167394 1.284289009361571 1.2729076280387908 1.020363198040556 1.011019173235027 1.007692033761704 0.9273137552361866 1.0 18.721765177795362 2.6463764611590315 5.71546630649956 0.9938242752757745 1.202097070173364 0.5495317211850459 0.09061429265661385 0.1763999881242497 8.764695869748241 0.029907847894591118 0.02816185866847005 442.97218927539353 -2.6463764611590315 0.20827279489758943 GTLDEEDEEADSDT(ph)DDIDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 GTLDEEDEEADS(0.357)DT(0.643)DDIDHR 318.51 1.6384e-65 801260000.0 564670.0 626190.0 602880.0 624180.0 586260.0 651130.0 634410.0 547150.0 723950.0 683810.0 True False 561629.8794607355 647032.3556101511 687760.2636731 703201.1240013829 660916.7359647382 606118.9156951508 603721.1646184516 587981.1113714038 545542.2229329975 640168.6603608046 0.8773154861161057 1.0107216983184995 1.0743422886173033 1.0984622764960918 1.032410326978893 0.9468112908769025 0.9430657918777047 0.918478438229095 0.852185145435775 1.0 19.288092525502197 2.6196060479141807 3.3809563624635217 0.9237209616461108 1.0257629895578348 0.3097524181492243 0.06432337351366489 0.29528197152766184 6.287509222038647 0.022845674107302975 0.02132918856971316 416.4914092918495 -2.6196060479141807 0.10204202791172401 GTLDPVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 GTLDPVEK 8 0 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;; 116.73 0.0051555 761580000.0 1839920.0 2037400.0 1882700.0 1758510.0 1713700.0 1861430.0 1939990.0 1762880.0 2674640.0 2028170.0 False True 1830014.0751543276 2105213.62736569 2147767.795278241 1981137.1856959064 1931929.5371043093 1732753.7254348975 1846145.272218517 1894435.0573232584 2015510.8103398185 1898730.4541963036 0.9638093027422039 1.108748017767897 1.131159923480213 1.0434009636899642 1.0174848846157356 0.9125854181173594 0.9723050831877846 0.997737753211072 1.0615044414995418 1.0 20.856603682818246 3.238184671505509 3.1135981978880083 0.9869069902970395 1.0728840693756778 0.2856219652295544 0.0537006081277342 0.28661931787628325 5.745163754022372 0.016196722518379402 0.02131901936657623 1730.5520713467156 -3.238184671505509 0.08597707907863827 GTLGGLFSQILQGEDIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTLGGLFSQILQGEDIVR 18 0 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;Q9BZZ5-3 Q9BZZ5-2 API5 Apoptosis inhibitor 5 0 ; 193.47 2.8351999999999997e-14 74573000.0 66408.0 86203.0 93144.0 82413.0 84047.0 83527.0 78162.0 82319.0 87268.0 89760.0 False True 66050.46670662242 89072.21474418603 106257.86557783846 92846.47735000472 94749.88726440202 77752.97509140872 74381.00545216395 88462.06178741214 65761.9707312891 84031.43995259775 0.7860208838963318 1.0599867715515976 1.2645013061513484 1.104901658264806 1.1275528221086126 0.925284335663762 0.8851568590770595 1.052725763563182 0.7825876929918791 1.0 16.358641585742678 2.7301104095622604 24.35117847069595 0.9387118617726481 1.0810155584563956 0.2199410945701714 0.1296325402444323 697.8063074116922 2010882.1579254393 0.042434190134090735 0.04063264927927907 537.1683419301816 -2.7301104095622604 0.14230369668374754 GTLS(ph)DSEIETNSATSTIFGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GTLSDSEIETNSATSTIFGK 20 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 GT(0.064)LS(0.936)DSEIETNSATSTIFGK;GTLS(1)DSEIETNSATSTIFGK;GTLS(1)DSEIETNSATSTIFGK 468.66 1.7607999999999986e-223 1112200000.0 748230.0 727430.0 672150.0 684500.0 701350.0 857940.0 827190.0 753230.0 934370.0 862480.0 True False 744201.6128161682 751642.0678092786 766782.877567468 771157.6298166341 790662.765272863 798632.6271735264 787175.6595273349 809439.8474244401 704107.0334165402 807435.7879937218 0.9216851963737267 0.930900114889536 0.9496518348198731 0.9550699155071762 0.9792268029603498 0.9890973858836887 0.9749080623281161 1.0024820047123473 0.8720285177921975 1.0 19.622988007275577 3.9795175905896896 1.3562349573980126 0.972745876581133 0.9217281956146008 0.18284520937749693 0.03497104601690252 0.7738299978817412 2.5697741443579285 0.010240780209738702 0.037089487639966556 9539.323799736285 -3.9795175905896896 -0.05101768096653214 GTLTLCPYHSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTLTLCPYHSDR 12 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 159.64 7.0215e-05 462370000.0 375000.0 567330.0 538260.0 588390.0 480520.0 434110.0 462410.0 382470.0 635650.0 466570.0 False True 372981.04166641715 586213.2360917735 614042.3293602093 662880.113671014 541711.37373482 404100.99748502165 440041.4617222581 411011.8535433071 479002.5747736161 436793.10314932646 0.853907808931008 1.3420844602744673 1.405796760372122 1.517606640058131 1.240201298575965 0.9251542539738125 1.0074368357684922 0.940976060702118 1.096634931549868 1.0 18.736590551091055 2.8300439261734156 5.12827998450473 0.9880192893523227 1.3018804898022847 0.4058911052799281 0.16715398171747795 0.21394034198367431 9.156355448799308 0.0525346196164915 0.055769170679864186 676.151360419144 -2.8300439261734156 0.3138612004499619 GTMTTGHNVADLVVILK ddPTM_BT-474_Trastuzumab_2h_R1 3 GTMTTGHNVADLVVILK 17 0 Q12905;B4DY09;A0A0A0MRL0;X6R6Z1 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ;; 147.92 3.8172e-07 1478200000.0 889614.0 1056459.0 901031.0 970788.0 1037294.0 1059300.0 1026120.0 977323.0 1263720.0 1109840.0 False True 884824.4170694065 1091622.5991720494 1027888.3328981518 1093689.6612628647 1169387.2423767732 986073.0843239815 976482.6554409373 1050255.8050056363 952293.1389804357 1039009.0610181723 0.8516041392385229 1.0506381899136845 0.989296793899831 1.0526276452210228 1.125483199569826 0.9490514773352252 0.9398211161739412 1.0108244907666568 0.9165397826725786 1.0 19.986776805114886 -0.07387557435622955 7.732531426023292 0.9999999999999999 0.9933764086823594 0.0 0.0744305152638311 0.0 0.0 0.06992204249379501 0.0164807834672588 0.8435764083206768 0.07387557435622955 -0.006623591317640454 GTPGPPPAHGAALQPHPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTPGPPPAHGAALQPHPR 18 0 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 0 ; 151.48 2.7387e-08 199216000.0 134540.0 163322.0 144950.0 157192.0 155357.0 161423.0 164086.0 130546.0 194693.0 166137.0 False True 133815.65158879926 168758.07403976607 165357.70007201418 177092.49108274118 175140.7930769179 150264.20795886923 156148.53331060839 140288.00541915614 146713.51890254018 155533.99442295838 0.8603627270376766 1.0850237253011468 1.0631611480532113 1.1386095479625935 1.1260611786298043 0.966118105024947 1.0039511547937157 0.9019764839168062 0.9432890825369543 1.0 17.246870413155406 2.6115194992729136 6.746429569010424 0.9545733364025979 1.0612770533273534 0.25923303499022676 0.07651091614468973 0.31376127208055626 15.899196277537381 0.02531357378520212 0.023809329217724596 408.8081066659708 -2.6115194992729136 0.10670371692475555 GTPKPPGPPAQPPGPPNAS(ph)SNPDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPKPPGPPAQPPGPPNASSNPDLR 25 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 GTPKPPGPPAQPPGPPNAS(0.54)S(0.46)NPDLR 57.78 0.054849 832430000.0 207070.0 210000.0 197490.0 171980.0 171000.0 286090.0 247780.0 214230.0 254600.0 249390.0 True False 205955.1581276398 216989.72305231937 225294.87538614773 193752.65036649356 192775.8364035928 266313.271683421 235793.93478848043 230216.93043789777 191857.2414652131 233473.71668647902 0.8821342335686007 0.9293967909188886 0.964968899213121 0.8298692166136841 0.8256853882292134 1.1406563251016417 1.0099378128507592 0.9860507371244934 0.8217509199241011 1.0 17.832900622057615 2.7795707415867907 24.99984985848791 0.9919569489770403 0.8900221499441219 0.29361520458864043 0.08154245192493022 707.2478922245423 431138.42632039386 0.025628832111539008 0.02718318161408447 601.9643079912939 -2.7795707415867907 -0.10193479903291847 GTPKPPGPPAQPPGPPNAS(ph)SNPDLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPKPPGPPAQPPGPPNASSNPDLRR 26 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 GTPKPPGPPAQPPGPPNAS(0.595)S(0.405)NPDLRR 140.78 1.6162e-07 638850000.0 61761.0 68869.0 74132.0 65916.0 77443.0 91921.0 80848.0 75502.0 99719.0 82682.0 True False 61428.48563829218 71161.2630328104 84569.14123310488 74260.95884148024 87304.9070093767 85566.71762875923 76937.07337064753 81136.34263138766 75144.58861614144 77405.16397237834 0.7935967380705069 0.9193348270433733 1.0925516708844252 0.9593799047823205 1.1278951239032453 1.1054393949645698 0.9939527212693736 1.0482032266004986 0.9707955485109032 1.0 16.240142196420774 4.507656150400716 3.1283128363687216 1.03984069306922 0.7986038823715138 0.6577351125921569 0.05550126854842693 0.15009918503440917 2.74119921975606 0.013404528212535818 0.06669748273052577 32185.19542047525 -4.507656150400716 -0.24123681069770608 GTPKPPGPPAQPPGPPNASS(ph)NPDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPKPPGPPAQPPGPPNASSNPDLR 25 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 GTPKPPGPPAQPPGPPNAS(0.287)S(0.713)NPDLR 186.86 8.9027e-18 703620000.0 341040.0 324790.0 352080.0 298880.0 359290.0 416540.0 391790.0 358410.0 468060.0 405510.0 True False 339203.8785331063 335600.43881029886 401649.8036657794 336718.1773551429 405043.4518213261 387745.57022969064 372837.6209168566 385156.3741691027 352712.8846826697 379630.00462542224 0.8935117730427972 0.8840197948563971 1.0580033157866011 0.8869640788466652 1.066942672829507 1.0213775663287625 0.9821078849779864 1.0145572517354977 0.9290964370181661 1.0 18.534234496863295 4.259810298465681 24.84449424559947 0.9953995620412907 0.8887656547001814 0.40490093629872814 0.05145558193828326 200.81691587121543 234784.7507770778 0.011637069735973367 0.03179961470864087 18189.061797046113 -4.259810298465681 -0.10663390734110922 GTPKPPGPPAQPPGPPNASS(ph)NPDLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPKPPGPPAQPPGPPNASSNPDLRR 26 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 GTPKPPGPPAQPPGPPNAS(0.096)S(0.904)NPDLRR 173.45 1.9262e-12 299230000.0 111040.0 124600.0 110680.0 116080.0 121600.0 160240.0 133540.0 126680.0 164490.0 130870.0 True False 110442.17297770384 128747.23567770937 126262.78195219426 130775.7160980494 137085.0392203324 149162.9859643865 127080.16002766023 136133.50486800596 123953.64355307493 122517.76455655589 0.9014380353530056 1.0508454520346546 1.030567137828487 1.0674020748858957 1.118899285475063 1.2174804731727764 1.0372386444334631 1.111132784382177 1.011719761633883 1.0 16.90263142349748 5.715890995717283 0.9633242250985894 1.0887598877405713 3.2395176561357715e-14 0.4153581203652773 0.06078396958202438 10.090474588789757 1.7959024023446502 0.0181667736549684 17.81331697600169 519865.4982650669 -5.715890995717283 -1.088759887740539 GTPLGTPAT(ph)SPPPAPLCHSDDYVHISLPQATVTPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPR 36 0 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8Y6W1;Q59IT9 A0A2R8YFV7 TSC1 Hamartin 1 GTPLGT(0.005)PAT(0.498)S(0.498)PPPAPLCHSDDYVHISLPQATVTPPR 112.62 2.496e-05 215790000.0 19355.0 33637.0 36964.0 46190.0 39989.0 36462.0 38003.0 26251.0 29165.0 36457.0 True False 19250.794830542654 34756.5872110041 42168.209903152376 52037.64926403259 45081.3621166273 33941.46776231566 36164.64970444193 28209.98291987703 21977.676540977773 34130.283047591976 0.5640385344504453 1.0183503946491974 1.23550718417284 1.524676756752067 1.3208610679778106 0.9944678078112323 1.0596059122631123 0.826538205983831 0.6439347868967756 1.0 15.058764758523703 1.8847157911728623 2.0334277015305746 0.7955202421696592 1.141490662111831 0.20353847350261034 0.2494100225170449 0.48792186343623634 3.753169259429441 0.16555096684262743 0.07827648314944659 76.68594807650052 -1.8847157911728623 0.3459704199421718 GTPLT(ph)PPACACSSLQVEVER ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPLTPPACACSSLQVEVER 20 0 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 GTPLT(1)PPACACSSLQVEVER 112.82 0.0016536 150560000.0 47665.0 50690.0 52212.0 56242.0 46189.0 57651.0 53111.0 41590.0 61791.0 53160.0 True False 47408.37693607936 52377.1860072479 59562.99576516043 63362.23143337779 52070.895366348224 53665.72206585651 50541.81802627725 44693.656989740804 46563.4360069795 49767.28328743426 0.9526012634097208 1.0524421376336734 1.1968303638587299 1.2731703892178523 1.046287679912309 1.0783333652332712 1.0155631307895514 0.8980529785322943 0.9356234242895936 1.0 15.60291001441006 2.155099907056214 2.0150595708743024 0.9343899712776101 1.1130733153329215 0.39849117096707465 0.08540710574277005 0.32413366092679285 2.594707918565919 0.047122232947685694 0.028461367185984875 142.9222705516716 -2.155099907056214 0.1786833440553114 GTPPLTPSDS(ph)PQTR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTPPLTPSDSPQTR 14 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 GTPPLTPSDS(1)PQTR;GTPPLTPS(0.003)DS(0.996)PQT(0.002)R;GTPPLTPS(0.033)DS(0.967)PQTR 246.66 1.6392e-12 115020000.0 272036.0 300434.0 279977.0 310358.0 275310.0 298536.0 310606.0 285269.0 358670.0 305433.0 True False 270571.38840204105 310433.76407381176 319395.3279962903 349649.2909782777 310369.09660978406 277898.9089981537 295580.8011498536 306557.22134663083 270280.5844317672 285940.0044456526 0.9462523053624258 1.0856604855820886 1.117001199658988 1.2228064822763687 1.085434328125901 0.9718783824491853 1.0337161521798655 1.0721032964273345 0.9452352949205408 1.0 18.12535294882315 2.886135681264185 6.888420666680157 1.017029589308837 1.1012580931687133 0.26230183502152093 0.07079220888816483 0.3838088444456297 20.737863602313112 0.022626987230360805 0.024066313848849382 769.3707677554788 -2.886135681264185 0.08422850385987624 GTPQQIDYAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTPQQIDYAR 10 0 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 ;; 152.37 4.2221e-05 606010000.0 431391.0 501342.0 425446.0 457302.0 459485.0 446474.0 453101.0 373047.0 521809.0 485494.0 False True 429068.4387880457 518028.8654023606 485345.09875707555 515196.3863117692 517997.69116903364 415610.303266747 431182.7736160922 400885.6614342835 393216.1638323696 454509.3572676753 0.9440255341879649 1.1397540163233133 1.0678440190423628 1.1335220674199527 1.1396854275630854 0.9144152845724155 0.9486774402361857 0.8820184997823685 0.86514426500749 1.0 18.793950470824747 2.728053473219048 24.221846343815113 0.9143793650237956 1.0897562935694265 0.6189129029266035 0.06372151383106053 281.9399415922829 649947.58555134 0.01982216916278521 0.018882532604561915 534.6301825610426 -2.728053473219048 0.17537692854563092 GTPSQS(ph)PVVGR ddPTM_BT-474_Trastuzumab_2h_R1 8 GTPSQSPVVGR 11 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 GTPSQS(1)PVVGR;GT(0.002)PS(0.424)QS(0.575)PVVGR;GTPSQS(1)PVVGR;GTPSQS(1)PVVGR;GTPS(0.033)QS(0.966)PVVGR;GTPS(0.006)QS(0.994)PVVGR;GT(0.004)PS(0.195)QS(0.801)PVVGR;GTPS(0.054)QS(0.945)PVVGR 231.52 1.0533e-12 21104130000.0 6230759.0 7292991.0 6676516.0 7122835.0 6607219.0 7347265.0 7345490.0 6178763.0 8170368.0 7211230.0 True False 6197213.285846403 7535733.796728848 7616511.419482604 8024585.18067928 7448609.175594796 6839365.86415145 6990160.586203223 6639853.670182781 6156890.283722118 6751003.127555395 0.9179692511993363 1.1162391209641775 1.1282043980093102 1.1886507870105316 1.1033336875807391 1.0130888306413883 1.0354254699826262 0.9835358604828759 0.9119963607469974 1.0 22.686670456617183 2.1939897084416327 1.3717090423615472 0.9633636517567459 1.0968389009337511 0.3528930319365835 0.07036352644078248 0.46930053973181146 1.7046188940841576 0.04487137726887731 0.02505752494611234 156.3110600874913 -2.1939897084416327 0.13347524917700526 GTPTAENPEY(ph)LGLDVPV ddPTM_BT-474_Trastuzumab_2h_R1 1 GTPTAENPEYLGLDVPV 17 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 GTPT(0.001)AENPEY(0.998)LGLDVPV 83.314 0.05730900000000001 64148000.0 138650.0 164630.0 197800.0 118580.0 163470.0 281430.0 105340.0 97726.0 215430.0 146140.0 True False 137903.52380546302 170109.61002906362 225648.52069157927 133592.21584171875 184286.93553739935 261975.4065149611 100244.3017621217 105018.81036257287 162340.163114104 136813.22008325116 1.0079692863127439 1.243371144437296 1.6493181035741402 0.9764569225139762 1.3469965506641852 1.9148398550633372 0.7327091760659007 0.7676071822494104 1.1865824297923815 1.0 17.06184811713898 GTQEVAPPTPLT(ph)PTSHT(ph)ANTSPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 2 GTQEVAPPTPLT(0.995)PT(0.039)S(0.131)HT(0.342)ANT(0.238)S(0.211)PRPVS(0.044)GMER 104.88 0.00037415 407310000.0 330450.0 425000.0 429060.0 440580.0 420040.0 418490.0 402910.0 318900.0 397680.0 429790.0 True False 328670.8939164461 439145.8680820748 489467.91854362446 496357.38282631524 473529.6042278659 389560.771319497 383419.70403433096 342697.93734138814 299677.09263898636 402360.43423826876 0.8168568923499436 1.091424083268641 1.2164911777925278 1.2336137964608707 1.1768791459933965 0.9681885647056637 0.9529259624152768 0.851718777941397 0.7447976171074623 1.0 18.61812892039867 2.3538693711141483 2.0060922892943016 0.8621731497192929 1.1170889268257682 0.40099828983753616 0.12591738677787503 0.31581791863029607 2.6003821561338385 0.058157551708391896 0.04255274730016704 225.8756270005775 -2.3538693711141483 0.2549157771064753 GTQEVAPPTPLT(ph)PTSHTANT(ph)SPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 2 GTQEVAPPTPLT(0.997)PT(0.049)S(0.188)HT(0.143)ANT(0.328)S(0.286)PRPVS(0.01)GMER 120.56 2.2418e-05 339620000.0 274010.0 374710.0 330460.0 344280.0 368580.0 337400.0 339920.0 262300.0 315670.0 330820.0 True False 272534.76060537266 387181.99583302153 376985.8955901889 387865.812700176 415516.4782551828 314076.3321541693 323476.77097949845 281874.1579324117 237877.35826128745 309706.78437074885 0.8799767210753844 1.2501566493600844 1.2172348641187676 1.2523645986258514 1.341644740199716 1.014108660203548 1.044461365729288 0.9101323321189542 0.7680728039090204 1.0 18.240543461165338 2.1614229419572073 1.640018759086403 0.8863476132653818 1.191527575450232 0.46310528430523124 0.1316138912776652 0.3184582798734984 1.6633578698600175 0.07470817310173465 0.04243082325933519 145.01834415116085 -2.1614229419572073 0.3051799621848501 GTQEVAPPTPLT(ph)PTSHTANTSPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 2 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLT(0.965)PT(0.019)S(0.015)HT(0.001)ANTSPRPVSGMER;GTQEVAPPTPLT(0.996)PT(0.004)S(0.001)HTANTSPRPVSGMER 147.17 4.9814e-08 1368140000.0 185997.0 241091.0 235760.0 267015.0 236727.0 224355.0 246475.0 203364.0 225898.0 205798.0 True False 184995.6128182092 249115.56819241287 268952.9587373448 300819.0716223352 266872.7802591421 208845.8669248626 234552.06262406422 218540.05434146756 170228.46477811754 192663.79544746794 0.9601991510057759 1.2930066472210509 1.3959704163031397 1.5613679307192776 1.3851734812932621 1.0839912420484155 1.217416391488133 1.134307843535944 0.8835519116747201 1.0 17.55572596648712 1.7583515795031253 1.0760763580293875 0.9524154140614584 1.315909746048616 0.3993063556453098 0.16014158260170538 0.5154190988057042 1.1107041735656222 0.14389236846970208 0.05792458972997131 57.32599210154553 -1.7583515795031253 0.36349433198715764 GTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLT(0.001)PT(0.214)S(0.214)HT(0.214)ANT(0.177)S(0.177)PRPVS(0.002)GMER 69.334 0.010787 855280000.0 40229.0 49738.0 49067.0 55095.0 45145.0 47507.0 49528.0 41029.0 50947.0 46036.0 True False 40012.41153386207 51393.49926274407 55975.20710199049 62070.02135098235 50893.948154621015 44222.95290944902 47132.141424666435 44090.7923210405 38391.79450482409 43097.94306659747 0.9284065244606348 1.1924814876507637 1.2987906874231634 1.4402084399960366 1.180890421521433 1.026103562323453 1.0936053572634565 1.0230370450141626 0.8908034066846028 1.0 15.395331395071858 2.7811334816142854 4.112457731988361 1.0151964505259328 1.2285016930601 0.38095493790874013 0.12794433547341852 0.24858202025152684 9.247608298494027 0.042980548882481706 0.04451427080114368 604.1342831928689 -2.7811334816142854 0.21330524253416727 GTQEVAPPTPLTPTSHT(ph)ANTSPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 5 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLT(0.003)PT(0.147)S(0.147)HT(0.506)ANT(0.085)S(0.085)PRPVS(0.027)GMER;GTQEVAPPTPLTPT(0.184)S(0.184)HT(0.262)ANT(0.184)S(0.184)PRPVS(0.001)GMER;GTQEVAPPTPLTPT(0.187)S(0.187)HT(0.246)ANT(0.187)S(0.187)PRPVS(0.004)GMER;GTQEVAPPTPLTPT(0.084)S(0.084)HT(0.345)ANT(0.243)S(0.243)PRPVS(0.001)GMER;GTQEVAPPTPLTPT(0.024)S(0.084)HT(0.297)ANT(0.297)S(0.297)PRPVS(0.001)GMER 148.12 4.5463e-08 11541270000.0 482333.0 636793.0 737297.0 646540.0 656007.0 610003.0 701963.0 552536.0 669747.0 755431.0 True False 479736.1727202343 657988.2700555027 841102.0088995914 728391.8977087609 739545.60299188 567834.9284026066 668006.3679309303 593769.0420409578 504696.8260000088 707218.7468229813 0.6783419908979217 0.9303886145713256 1.189309549100685 1.0299386165608522 1.045709840574956 0.8029127210689414 0.9445541014456933 0.8395832897647717 0.7136360967059259 1.0 19.4317969923648 2.7372801594417044 24.992719863676783 0.8565471111842908 0.9872612564672767 0.1399006238593291 0.1402279087584284 220.16413627179426 4297253.103898402 0.045500931510702725 0.04513044602318391 546.1100381315048 -2.7372801594417044 0.13071414528298586 GTQEVAPPTPLTPTSHTANT(ph)SPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 6 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLTPT(0.004)S(0.004)HT(0.142)ANT(0.407)S(0.407)PRPVS(0.038)GMER;GTQEVAPPTPLTPT(0.006)S(0.006)HT(0.224)ANT(0.317)S(0.317)PRPVS(0.131)GMER;GTQEVAPPTPLT(0.001)PT(0.02)S(0.02)HT(0.065)ANT(0.369)S(0.369)PRPVS(0.155)GMER;GTQEVAPPTPLT(0.001)PT(0.182)S(0.182)HT(0.182)ANT(0.222)S(0.222)PRPVS(0.009)GMER;GTQEVAPPTPLTPT(0.064)S(0.064)HT(0.278)ANT(0.296)S(0.296)PRPVS(0.003)GMER;GTQEVAPPTPLTPT(0.006)S(0.018)HT(0.185)ANT(0.395)S(0.395)PRPVSGMER 140.93 7.8431e-08 7446190000.0 867907.0 954596.0 869664.0 854372.0 870766.0 967630.0 947135.0 961073.0 1047149.0 924883.0 True False 863234.2851455323 986369.1507945325 992105.131945004 962535.4075992652 981652.8886655611 900740.0156560133 901318.4616429375 1032793.1474898077 789093.1600277154 865856.1751078259 0.9969719105347178 1.1391835955569631 1.1458082305891695 1.111657380602962 1.1337366607604489 1.0402882621283416 1.0409563245659077 1.1927998866107214 0.9113443811028418 1.0 19.7237678773438 1.2277875346257459 24.999704567932678 0.955672140847421 1.103922353254586 0.48591309767349433 0.059353254584424794 190.61978906968525 442332.26567550923 0.0534559922776748 0.01391092186377638 16.896141370594357 -1.2277875346257459 0.14825021240716507 GTQSIPNDS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTQSIPNDSPAR 12 0 Q9NQ92;H9KV77;J3QRX6 Q9NQ92 COPRS Coordinator of PRMT5 and differentiation stimulator 1 GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR 236.37 4.7205e-16 3591990000.0 3267430.0 3843160.0 3669200.0 3832450.0 3629860.0 3536170.0 3370970.0 3403500.0 3369840.0 3567420.0 True False 3249838.5199256 3971077.2573607233 4185791.466741873 4317637.777050046 4092101.1551341764 3291722.8911488038 3207903.302744062 3657486.4526228146 2539388.0855425503 3339744.201378077 0.973080069600726 1.1890363506648622 1.2533269658840016 1.2928049325659319 1.225273825895305 0.9856212609907495 0.9605236537038935 1.095139696960512 0.7603540667859305 1.0 21.67130617695292 2.731804643082912 22.231903490100343 0.976863869094895 1.1964297122886987 0.5024551665209293 0.11182210632047017 103.74448633009297 341390.13136741554 0.036210398349759455 0.034959687740597996 539.2679912252671 -2.731804643082912 0.21956584319380368 GTRES(ph)GQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTRESGQK 8 1 A0A1W2PQW7;A8K830-4;A8K830-2 A0A1W2PQW7 1 GT(0.349)RES(0.651)GQK;GT(0.335)RES(0.665)GQK 73.931 0.025611 4897600000.0 953020.0 2791600.0 2553200.0 2856100.0 2088370.0 1494900.0 1589850.0 1323920.0 864840.0 2177560.0 True False 947889.046210477 2884516.718442161 2912668.367187764 3217681.967157471 2354311.540761235 1391561.0816160846 1512942.881683207 1422717.6331295406 651711.7702622744 2038586.2564970877 0.4649737253891033 1.4149593666929943 1.4287687645813014 1.5783889236487 1.1548746261081244 0.6826108422840104 0.7421529880628666 0.6978942532332201 0.31968810158767275 1.0 20.959137570638184 2.7828534583361524 4.218153642655219 0.6740447797027528 1.2614039714583625 0.3948517769486234 0.3203193584154293 0.20991681997289335 8.248943559187097 0.10083006477341758 0.1046382930466205 606.5316363306579 -2.7828534583361524 0.5873591917556097 GTS(ph)PRPPEGGLGYSQLGDDDLK ddPTM_BT-474_Trastuzumab_2h_R1 6 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 GT(0.039)S(0.961)PRPPEGGLGYSQLGDDDLK;GT(0.025)S(0.975)PRPPEGGLGYSQLGDDDLK;GT(0.004)S(0.996)PRPPEGGLGYSQLGDDDLK;GT(0.02)S(0.98)PRPPEGGLGYSQLGDDDLK;GT(0.009)S(0.991)PRPPEGGLGYSQLGDDDLK;GT(0.368)S(0.632)PRPPEGGLGYSQLGDDDLK 221.9 5.4339e-26 4726210000.0 4178870.0 3279630.0 2983420.0 2705720.0 2857250.0 3868720.0 3539730.0 3536740.0 4767230.0 3536350.0 True False 4156371.428236103 3388790.501971801 3403459.603648488 3048263.8745762766 3221103.8512524297 3601284.4923873004 3368499.7368182535 3800669.4980018255 3592410.0441092206 3310657.1153784413 1.2554521001070171 1.0236005674614927 1.028031440597991 0.9207428520509378 0.9729500032757772 1.0877854053984801 1.017471643671924 1.1480106110497557 1.0851048353579111 1.0 21.658686167930085 -0.11541464616961396 8.09705316012324 1.0000000004209504 1.0568553510402525 0.038505143321931445 0.08863359769963876 0.0 0.0 0.08703968675967369 0.020515450913372747 0.7666291944105401 0.11541464616961396 0.056855350619302136 GTS(ph)PSSSSRPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 GT(0.154)S(0.845)PS(0.001)SSSRPQR;GT(0.031)S(0.578)PS(0.063)S(0.036)S(0.036)S(0.256)RPQR;GT(0.001)S(0.481)PS(0.101)S(0.158)S(0.158)S(0.101)RPQR 96.089 0.0034401 1991756000.0 1736217.0 2090928.0 1935704.0 2165364.0 2115216.0 2009133.0 2091993.0 1900873.0 2117667.0 2093707.0 True False 1726869.4005838411 2160523.274487333 2208234.297759213 2439498.8603802295 2384576.219732522 1870246.3647003612 1990795.3064006655 2042725.7956975144 1595796.3431339893 1960084.826747254 0.8810176871016179 1.1022600884435727 1.126601393789554 1.2445884112212426 1.2165678684884818 0.9541660336221371 1.015667933976294 1.042161934944113 0.814146572310445 1.0 20.90248466064397 2.7192872757855615 24.51596586698895 0.9781852199874386 1.1214753510847832 0.3194166890516261 0.10764491281773908 850.3942331827096 1081712.0306967325 0.03616919702407142 0.03415188410307457 523.946900777469 -2.7192872757855615 0.14329013109734468 GTS(ph)PTQIWCNNSQLPVDHILAGSFETAMR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTSPTQIWCNNSQLPVDHILAGSFETAMR 29 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 1 GT(0.037)S(0.963)PTQIWCNNSQLPVDHILAGSFETAMR 227.66 5.417499999999999e-35 162510000.0 7973.5 7053.1 8806.7 12486.0 13604.0 9129.0 9793.6 7825.1 9665.7 10531.0 True False 7930.571561939132 7287.858169811011 10046.606810791363 14066.72631978158 15336.3887627747 8497.933717354497 9319.846152814835 8409.048697052673 7283.717748744342 9858.902563957294 0.8044071346168024 0.739215964711362 1.0190390609519044 1.4268044773266624 1.5555878215940886 0.8619553405894993 0.9453228787235234 0.8529396291829605 0.7387959969675073 1.0 13.267211347730465 GTS(ph)SPDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTSSPDYR 8 0 Q66K14-2;Q66K14;G3V133 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 GT(0.038)S(0.481)S(0.481)PDYR 101.64 0.005505899999999999 332740000.0 243340.0 302330.0 267650.0 272750.0 285140.0 239410.0 279340.0 263130.0 308360.0 267270.0 True False 242029.88447761576 312392.87128765567 305332.79354449565 307280.1220343127 321450.88884280936 222860.1502105206 265827.2570175723 282766.0967470662 232368.8098123063 250212.59977864087 0.9672969494411383 1.24850975356167 1.2202934377190386 1.228076133280892 1.2847110382418467 0.8906831646674925 1.0624055593233332 1.1301033481016738 0.9286854859342788 1.0 17.93279491454196 2.7482650905742334 24.99608320067365 1.025249963189683 1.1968634013616952 0.4470423675375592 0.1024957491793449 702.3422279252786 1809042.4699766412 0.03167562549378725 0.03321494620150564 560.0993782537082 -2.7482650905742334 0.17161343817201224 GTSKEDAMK ddPTM_BT-474_Trastuzumab_2h_R1 5 GTSKEDAMK 9 1 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 ;;;; 96.229 0.006848399999999999 2224410000.0 2597850.0 2012780.0 1751050.0 1564910.0 1430090.0 1680390.0 2005600.0 1839880.0 2865820.0 2003080.0 False True 2583863.464248268 2079774.1655487956 1997582.6196005568 1763027.4455461632 1612203.4846924804 1564228.5945125795 1908581.4658639769 1977181.1883213336 2159577.061020568 1875241.7194769308 1.3778828816633815 1.1090699102667767 1.0652400695083464 0.9401601016203565 0.8597310245114317 0.8341477145404468 1.017778906068891 1.0543607086945768 1.1516259683167396 1.0 20.838645140940226 4.8070176465536365 1.441537721619082 0.9812305414996559 1.5814281782594268 0.6449253519422729 0.08821520497641286 0.9718380153395714 1.6296183437009482 0.026875237374048837 0.8782402202883267 64123.56311853058 -4.8070176465536365 0.6001976367597709 GTSPSS(ph)SSRPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 GTS(0.047)PS(0.212)S(0.247)S(0.247)S(0.247)RPQR 132.14 0.00048983 723110000.0 326200.0 399610.0 348520.0 367930.0 356750.0 386010.0 374140.0 322490.0 365330.0 331900.0 True False 324443.775444227 412910.7772806537 397588.58660985494 414509.9002752874 402179.99787708616 359326.0372698009 356041.4188464042 346555.8413710392 275299.31667119515 310717.8578461139 1.044174859125448 1.328892971079737 1.2795807404374056 1.3340395146537651 1.2943575263584295 1.156438319189754 1.1458672549896929 1.1153393106316871 0.886010603251326 1.0 18.245245634099547 1.7188336450224588 1.1624732843338865 0.9507088254421244 1.2582496966206982 0.6103428545779557 0.0899047601147973 0.296624899232957 0.7519088093674494 0.07483980052074259 0.029044144799112062 52.3399911683236 -1.7188336450224588 0.30754087117857376 GTSS(ph)PDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTSSPDYR 8 0 Q66K14-2;Q66K14;G3V133 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 GT(0.003)S(0.046)S(0.951)PDYR 105.57 0.0045765 287780000.0 490220.0 558830.0 508660.0 567780.0 502250.0 477740.0 548320.0 473570.0 540860.0 536110.0 True False 487580.7099885623 577430.3187301315 580274.9066480215 639660.8897842049 566208.5604310196 444714.95827899437 521795.6668141877 508910.1981397337 407572.30015269114 501895.00081313675 0.9714795110503524 1.1505002396808446 1.1561679349423661 1.2744914548817363 1.128141462883046 0.8860717033612546 1.039651054441286 1.0139774202078748 0.8120668655642509 1.0 18.937026050464468 2.820650815640206 6.950954647693363 0.9641487873131458 1.1469750329589035 0.4967110378115446 0.09276285924211639 0.231850115134488 16.84640688401198 0.02879485763132492 0.030560139185108796 661.6842779410999 -2.820650815640206 0.18282624564575767 GTSSSHCRPQENISSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTSSSHCRPQENISSR 16 1 E7EWN3;Q9C0A6;Q9C0A6-2;Q9C0A6-3;H0Y3R4 E7EWN3 SETD5 SET domain-containing protein 5 0 ; 94.487 0.0024488 13488900.0 7247.5 10676.3 10978.2 11410.1 12329.599999999999 10973.5 12736.599999999999 13255.4 9761.6 10641.7 False True 7208.480265272948 11031.654191540361 12523.835135775 12854.617490096096 13899.701476735292 10214.927773840463 12120.481999463065 14244.58525755734 7355.98447873851 9962.537595182253 0.723558651237499 1.107313682497431 1.2570928858357688 1.2902955062686452 1.3951968907456869 1.0253339248406212 1.2166058982125563 1.4298149564269476 0.7383645390001603 1.0 13.282297548009177 4.716462788492437 3.0119669898592076 1.2051918198871485 0.6578369655971495 0.29831942754446705 0.1973677599782954 0.37858465758688087 5.229606741296656 0.046308185921224036 0.4841065220972057 52055.04047459807 -4.716462788492437 -0.547354854289999 GTSYQSPHGIPIDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GTSYQSPHGIPIDLLDR 17 0 Q9Y230;Q9Y230-2;M0R0Y3 Q9Y230 RUVBL2 RuvB-like 2 0 ;;; 178.88 9.4699e-10 3913390000.0 1490870.0 2290030.0 2272520.0 2482680.0 2340420.0 2240700.0 2405010.0 2085460.0 2268630.0 2236720.0 False True 1482843.3215712295 2366252.2641976336 2592471.0629020613 2796987.0334450877 2638458.6142438403 2085805.6830404461 2288670.478269607 2241087.614951303 1709556.5345845497 2093970.6146476676 0.7081490595897084 1.1300312657901268 1.2380646818858398 1.3357336601954704 1.2600265714272159 0.9961007420304246 1.092981182381444 1.070257433067364 0.8164185889839721 1.0 20.99780976593886 1.4113589221407956 4.400654822647303 0.9098311945676507 1.121909647600326 0.17525057949831035 0.1685433092814741 0.3508724256511321 11.351736608160124 0.12380214861638009 0.04424155116673054 25.7845123453507 -1.4113589221407956 0.21207845303267536 GTT(ph)PPPPSWEPNSQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTTPPPPSWEPNSQTK 16 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 GT(0.002)T(0.998)PPPPSWEPNSQTK;GT(0.259)T(0.741)PPPPSWEPNSQTK 200.63 3.9174e-10 370830000.0 388490.0 361330.0 320970.0 342180.0 357880.0 402150.0 390240.0 348690.0 411500.0 410060.0 True False 386398.41300529666 373356.6506214024 366159.78607874725 385499.95291549445 403453.896679051 374350.31705927354 371362.6003384315 374711.0184119431 310091.3388174985 383889.61972997105 1.006535194353758 0.972562506076675 0.9538152824666241 1.0041947817882029 1.0509632872148027 0.9751509231288736 0.9673681736944304 0.9760905196538416 0.807761718161636 1.0 18.550332025070855 1.423769529094578 14.82778214826688 0.8998553912499324 0.9880228284622299 0.3147957016012848 0.05007747422963142 1.8542246394059523 513.7808057133317 0.029334055072626423 0.011451540323152562 26.531971926214275 -1.423769529094578 0.08816743721229747 GTTTVDGAGFGIDRPAELSKEDDEYEAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTTTVDGAGFGIDRPAELSKEDDEYEAFR 29 2 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 0 104.51 0.00030031 99261000.0 56142.0 52798.0 49543.0 59187.0 52828.0 58554.0 60567.0 57214.0 93329.0 68883.0 False True 55839.73770996257 54555.34951293503 56518.22376452434 66680.06813142012 59555.33266391227 54506.299801289875 57637.1428215913 61483.599206805215 70329.3184945281 64486.82796629666 0.8659092014751695 0.845992138758132 0.8764305137486833 1.0340106690667081 0.9235270913780752 0.845231522781319 0.8937816394336332 0.9534288031493648 1.0905997505612302 1.0 15.976716886312271 1.4540414318166885 3.7972115621996863 1.0437529658157831 0.9001091015517161 0.5243999787134196 0.05540748894195357 0.17730634491736755 4.836894910061331 0.04166561976620876 0.015176214603553739 28.44732482788358 -1.4540414318166885 -0.14364386426406706 GTTVTPDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTTVTPDKR 9 1 Q16186;A0A087WX59;A0A087WUX6 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 0 76.1 0.058346 93771000.0 122650.0 136650.0 123200.0 111000.0 85446.0 109910.0 146670.0 107490.0 148150.0 121150.0 False True 121989.66602769602 141198.31264333072 140545.4891264032 125052.58861891353 96327.04162187934 102312.18040031039 139575.01176618942 115511.44962316022 111640.41760829258 113418.10327826682 1.0755749082525143 1.2449362893761877 1.2391803871166882 1.1025804964495127 0.8493092269894936 0.9020798042204208 1.230623751692864 1.018456897835414 0.9843262616937549 1.0 16.791291409472596 3.4755805384547678 24.990651807952755 1.008351460611332 1.188814345775465 0.4074844339155862 0.10259226395475182 52.81258857880825 856615.3721025493 0.02996229765658717 0.040868290022125615 2989.3759653040365 -3.4755805384547678 0.180462885164133 GTVGEPTYDAEFQHFLR ddPTM_BT-474_Trastuzumab_2h_R1 6 GTVGEPTYDAEFQHFLR 17 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;;; 318.18 2.1796999999999997e-58 4061424000.0 2253450.0 2427832.0 2403723.0 2542321.0 2366229.0 2417470.0 2466233.0 2063158.0 2681043.0 2523886.0 False True 2241317.675581834 2508640.9204645627 2742146.304865143 2864178.577929953 2667554.237411913 2250355.9890122684 2346931.8878650325 2217121.3264640444 2020335.8767856222 2362809.434672482 0.9485816514409303 1.061719529155467 1.1605448431964815 1.2121919507770071 1.1289756161743416 0.9524068915545866 0.9932802254068999 0.9383411518209754 0.8550566317954748 1.0 21.17207184707461 2.7328663106049125 23.249598200320314 0.9473904167444694 1.1094720651146301 0.5186508501027021 0.07430507982343636 149.88395402558703 611966.7238464316 0.025382511301917467 0.02458366844344029 540.5878875073237 -2.7328663106049125 0.1620816483701607 GTVIIIANHGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTVIIIANHGDR 12 0 A0A087WYS1;E7EUC7;Q16851;Q16851-2 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 ;; 136.99 0.00010019 1542000000.0 2688150.0 2971790.0 3000890.0 3101010.0 3015420.0 3234030.0 2962870.0 2670910.0 3414560.0 3303800.0 False True 2673677.299081542 3070704.233665006 3423389.2277965285 3493597.548046281 3399415.863205385 3010469.1181877526 2819544.658837455 2870226.866806169 2573087.440759853 3092948.655474514 0.8644428333296571 0.9928080209898941 1.1068367467843785 1.1295362248780365 1.0990857727910952 0.9733330402556885 0.9116040946385792 0.9279904668724043 0.8319205157853147 1.0 21.560551453476496 2.4738781168851847 4.0389596823325284 0.9147844912918365 1.0448208703909823 0.33483575541823374 0.07981047225934867 0.2480071154679287 9.37954009004253 0.029631867610810908 0.025728108371931874 297.76806372692283 -2.4738781168851847 0.13003637909914578 GTVIVQPEPVLNEDKDDFKGPEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTVIVQPEPVLNEDKDDFKGPEFR 24 2 P46100;A0A096LNW1;A0A096LNN3;A0A087WWG0;A0A096LNL6;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 0 ; 54.559 0.060211 311160000.0 133569.0 115530.0 88135.0 86778.0 88392.0 117555.0 139777.0 105221.0 188172.0 108859.0 False True 132849.87934491085 119375.3462106401 100543.64191684703 97764.08590245109 99648.19725956938 109428.69954470458 133015.45251000635 113073.12532141183 141799.53197561705 101911.52542112126 1.3035805204165611 1.1713625688297218 0.9865777349654827 0.9593035282169311 0.977791244393612 1.073761766321529 1.3052051959810893 1.1095224495381493 1.3913983859006094 1.0 16.6369576930419 2.332443527428446 10.437322651893863 1.2030975626761005 1.0683594429424677 0.15860509279383628 0.13733969470786792 0.6315461093167547 65.14104090605764 0.04810435577467707 0.04022139647901121 215.0025087162342 -2.332443527428446 -0.1347381197336328 GTVLLADNVICPGAPDFLAHVR ddPTM_BT-474_Trastuzumab_2h_R1 4 GTVLLADNVICPGAPDFLAHVR 22 0 P21964-2;P21964 P21964-2 COMT Catechol O-methyltransferase 0 ;;; 181.85 4.8193e-17 3794942000.0 934008.0 1198776.0 1138966.0 1137295.0 1167510.0 1187315.0 1090439.0 1074262.0 1179715.0 1114142.0 False True 928979.4047060441 1238676.5344846058 1299322.5127300557 1281276.4303905151 1316185.478126072 1105238.7086888778 1037690.2996884974 1154428.8854319053 888990.0456211077 1043036.5036950454 0.8906489863154892 1.1875677697726676 1.2457114474201962 1.2284099605828602 1.261878633646448 1.0596356932604716 0.9948743845612225 1.1067962447548507 0.8523096195308457 1.0 19.992358218819682 2.5353198699500257 5.990093669795983 1.010838075266902 1.1722264858649643 0.33406664700247657 0.11440240202657345 0.274333413149395 20.94463681399512 0.038055251129790836 0.03536206470747728 343.02033753685305 -2.5353198699500257 0.1613884105980623 GTVQALHATGAR ddPTM_BT-474_Trastuzumab_2h_R1 5 GTVQALHATGAR 12 0 Q7Z4W1;J3KS22;J3QS36 Q7Z4W1 DCXR L-xylulose reductase 0 ;;;; 234.52 5.0461e-16 6675870000.0 2809640.0 4324470.0 4205220.0 4502040.0 4450300.0 4690310.0 4395060.0 3790890.0 4613020.0 4333950.0 False True 2794513.210420348 4468407.369752686 4797278.423572518 5071997.802395438 5017019.32600531 4366079.909502132 4182454.1570403534 4073785.4615493715 3476203.0323010855 4057353.600518733 0.6887526909321064 1.1013108074143203 1.18236636386811 1.25007536975505 1.2365250406974349 1.0760905603455238 1.0308330426279895 1.0040498962251005 0.8567661028747046 1.0 21.95210760898564 1.794692728570009 1.8011036429665892 0.9349456934743887 1.1064284882129887 0.13563377613471717 0.15218285190349173 0.6329903898315814 3.987372774129491 0.11007388205901442 0.046622331932503966 62.32936875545781 -1.794692728570009 0.17148279473859995 GTVSFHSHSDHR ddPTM_BT-474_Trastuzumab_2h_R1 4 GTVSFHSHSDHR 12 0 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;; 173.72 1.8682e-05 236289000.0 79550.0 161646.0 213662.0 205960.0 197988.0 164382.0 187478.0 30017.1 160344.0 78404.0 False True 79121.71163883587 167026.28939292944 243743.75241660388 232034.51488244545 223200.59823318446 153018.6592536059 178408.9729044907 32257.12842574533 120829.36969952128 73400.18959495844 1.07794969025898 2.27555664794089 3.32075099208389 3.161225007222365 3.0408722302335196 2.084717493210891 2.4306336794087096 0.4394692793540269 1.6461724467782648 1.0 16.163496169148633 1.7552991903570139 24.99999999999999 1.0130962665308236 2.5407020893685734 0.5014304356078482 0.6636025667316643 5.043577587257239 7541.372600164756 0.3191464793911104 0.17698428827126947 56.92449550503638 -1.7552991903570139 1.5276058228377498 GTVTDFPGFDER ddPTM_BT-474_Trastuzumab_2h_R1 7 GTVTDFPGFDER 12 0 P08758;D6RBE9;E9PHT9;D6RCN3 P08758 ANXA5 Annexin A5;Annexin 0 ;;;;;; 256.24 8.517299999999999e-21 4258610000.0 5839480.0 7029680.0 5534310.0 5661250.0 5192740.0 5916250.0 5152450.0 5010250.0 6212750.0 5732550.0 False True 5808040.888507223 7263658.649268711 6313492.742915144 6377963.6695389645 5854004.659218664 5507273.562854478 4903206.309229583 5384140.296533999 4681701.009084845 5366693.751117031 1.0822381819902298 1.3534699362632427 1.176421282023228 1.1884344375364155 1.090802816538619 1.026194863775893 0.9136363162531908 1.003250892677328 0.8723622450247677 1.0 22.35560213279368 2.9197934605640996 1.3591895353084014 0.9499125827419683 1.219356321992778 0.7082972427924954 0.07267640221283483 0.20682485331557443 0.788586583392085 0.027425025356396363 0.030626392823851163 831.3682994037322 -2.9197934605640996 0.2694437392508098 GTVTDFPGFDERADAETLR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTVTDFPGFDERADAETLR 19 1 P08758;D6RBE9;E9PHT9;D6RCN3 P08758 ANXA5 Annexin A5;Annexin 0 ;; 198.96 6.533100000000001e-16 672919000.0 487755.0 790520.0 806856.0 787330.0 754668.0 774064.0 692380.0 620878.0 894120.0 773055.0 False True 485128.981274675 816831.9803205695 920454.3114819251 887005.897273237 850770.496532319 720554.7776306601 658886.9342515463 667211.0691146012 673776.1065941723 723717.9680543164 0.670328778182643 1.1286606335290887 1.2718411758609858 1.2256237048499887 1.1755553048096592 0.9956292498413983 0.9104194773869365 0.9219213817619709 0.9309926467703842 1.0 19.465068064893632 2.5358521611506033 4.622536555494608 0.9336321568485281 1.1127242895195513 0.17378890095884358 0.15596764607875513 0.342405959815091 14.989514481229802 0.05405548558712461 0.04955738494429748 343.441016716407 -2.5358521611506033 0.1790921326710232 GTWERPGGAAPLGYDFWYQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 GTWERPGGAAPLGYDFWYQPR 21 1 Q13228;Q13228-4;Q13228-2;Q13228-3;A6PVX1;H0Y532 Q13228 SELENBP1 Selenium-binding protein 1 0 110.6 0.00024461 217310000.0 91047.0 94316.0 63990.0 67706.0 66935.0 93677.0 83311.0 70763.0 143550.0 69436.0 False True 90556.81306827275 97455.25104477412 72999.23578894924 76277.57265794741 75458.77549517233 87201.3294819385 79280.92865107377 76043.69438723313 108174.02597145055 65004.53503284962 1.3930845443707958 1.4992069552612866 1.12298681549002 1.1734192486632053 1.1608232480555354 1.3414653214252188 1.219621501961512 1.1698213724443216 1.6640996803805381 1.0 15.988252750631663 4.248052608919994 24.98849084534954 1.232880165707881 1.4461458104472766 0.20682905013833564 0.16809574204501654 292.2024344409081 769231.9082897528 0.03874719319785034 0.10319142300470563 17703.233961355523 -4.248052608919994 0.2132656447393957 GTWESHPETTELVVLQGR ddPTM_BT-474_Trastuzumab_2h_R1 3 GTWESHPETTELVVLQGR 18 0 P36915;A0A140T8Y2;P36915-2 P36915 GNL1 Guanine nucleotide-binding protein-like 1 0 ;; 162.41 3.5675e-11 813580000.0 371873.0 439893.0 414583.0 427675.0 388420.0 444500.0 442142.0 382518.0 445110.0 486470.0 False True 369870.8770869742 454534.57258406555 472952.682779965 481818.6111494939 437882.9846542889 413772.7612404511 420753.9023135371 411063.4355470466 335418.6046684254 455423.06811207917 0.8121478752058939 0.9980490765834572 1.0384908360934668 1.0579582917194674 0.9614861769508046 0.9085458998722085 0.9238748139345238 0.90259686943632 0.7364989350646577 1.0 18.796847843223663 2.4504857795884245 1.5529201099639665 0.8787224264407474 0.9831930454016292 0.17043668911489585 0.08692758672111865 0.625874039216088 3.059288173690086 0.04186427348877744 0.031220010096070245 282.15371939890593 -2.4504857795884245 0.10447061896088183 GTYFPTWEGLFWEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GTYFPTWEGLFWEK 14 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 203.11 3.6057e-08 264170000.0 354450.0 417540.0 351230.0 351360.0 359630.0 389150.0 401360.0 385610.0 455250.0 429010.0 False True 352541.68058309745 431437.56649173994 400680.13105411176 395842.13997424796 405426.74880598875 362248.9764605654 381944.68345590646 414386.17628790456 343059.737537464 401630.2145060597 0.877776790316104 1.0742159103301987 0.9976344323269692 0.9855885480654633 1.0094528104779124 0.90194652537801 0.9509859309903681 1.0317604635336826 0.8541681505694786 1.0 18.615508281271243 GTYVPSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GTYVPSSPTR 10 0 Q9Y4P8-4;Q9Y4P8 Q9Y4P8-4 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 1 GTYVPS(0.002)S(0.995)PT(0.003)R;GTYVPS(0.001)S(0.999)PTR 174.23 3.3263e-06 4075000000.0 3200500.0 4063900.0 3788100.0 3761500.0 3452600.0 3417400.0 3375900.0 2935800.0 3667100.0 3362400.0 True False 3183268.863608975 4199164.454820576 4321431.553244553 4237705.514324719 3892268.1448365124 3181163.1816943036 3212594.819809628 3154884.3036903334 2763392.341622479 3147808.753304534 1.011265014199867 1.3339960537349485 1.3728380254067094 1.3462398279044188 1.236500832761982 1.0105960784163759 1.0205813223046294 1.0022477700966972 0.8778780917746355 1.0 21.585916461173223 2.7510823144585395 3.363954806585404 0.9828964898988237 1.2803696388241599 0.6561961218110932 0.10071346580657553 0.15091176845365456 3.606703539173166 0.03357387116778338 0.033861522285571204 563.7444956028236 -2.7510823144585395 0.29747314892533616 GVAGAHGLLCLLSDHVDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GVAGAHGLLCLLSDHVDKR 19 1 U3KQ56;Q9UBQ7 U3KQ56 GRHPR Glyoxylate reductase/hydroxypyruvate reductase 0 139.88 7.3437e-08 664280000.0 299980.0 414180.0 372400.0 353410.0 398880.0 440230.0 427500.0 310960.0 527470.0 415400.0 False True 298364.941010911 427965.73092290305 424830.68304117396 398151.6697640565 449675.0036530118 409797.9362899521 406820.19179140916 334165.4142228851 397482.0862358832 388888.81635816785 0.7672242771211912 1.1004835133359692 1.0924219601365537 1.0238187703432375 1.1563073679106772 1.053766318423842 1.0461092597137749 0.8592826539787086 1.0220969838068084 1.0 18.568998220865897 1.7830674580588737 24.999999998954134 0.9456158540420283 1.044122819163535 0.08315086896564705 0.10561114036178905 149.62646855118712 84075.20395232586 0.047110719267795004 0.02626199088853862 60.68305800007037 -1.7830674580588737 0.0985069651215067 GVAINFVTEEDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GVAINFVTEEDKR 13 1 Q14240;Q14240-2 Q14240 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 146.58 6.7919e-05 490270000.0 392780.0 417040.0 352120.0 344890.0 287080.0 439900.0 450240.0 392380.0 554740.0 481450.0 False True 390665.3161219607 430920.9242939961 401695.4353180938 388553.03863763163 323637.93634352816 409490.7484132153 428460.17111617315 421661.38806526765 418031.7601351624 450723.44880991755 0.8667517014112904 0.9560650226470185 0.891223734595401 0.8620652856281615 0.7180410453417859 0.9085188478532182 0.9506054593952723 0.9355213028712287 0.9274684093736997 1.0 18.781882982403953 2.481978368906426 24.70604332223714 0.9446260096150902 0.860917720122861 0.3663241490795781 0.058223596328827856 236.85038888447838 1204767.6135235245 0.02116862556209865 0.01816753483915787 303.3740077623685 -2.481978368906426 -0.0837082894922292 GVAINMVTEEDKR ddPTM_BT-474_Trastuzumab_2h_R1 5 GVAINMVTEEDKR 13 1 P60842 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 ;;;; 241.51 1.0963e-16 4072810000.0 2252550.0 2099800.0 1872570.0 1764680.0 1996770.0 2295730.0 2130900.0 2246090.0 3088780.0 2237150.0 False True 2240422.521081833 2169690.5736440932 2136211.5793297803 1988088.307063282 2251046.823716971 2137031.5886671306 2027820.2261714942 2413704.641213921 2327591.5565315066 2094373.1716795228 1.06973415787464 1.035961787031569 1.0199765773435239 0.9492521838737035 1.074806941836353 1.0203681070615505 0.9682229764934115 1.1524711421309504 1.1113547423188967 1.0 20.99808709132806 1.7387602678874152 24.999999999995943 1.1004362480539385 1.0198202873818185 0.26087469098344174 0.05131493682030336 0.048927754086399426 3946.366746230136 0.02282383717631179 0.012657039499884866 54.7974397585399 -1.7387602678874152 -0.08061596067211996 GVAPADS(ph)PEAPRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVAPADSPEAPRR 13 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR 205.28 4.3566e-08 646020000.0 503084.0 661460.0 678510.0 648669.0 649662.0 695075.0 687376.0 573596.0 686992.0 698600.0 True False 500375.4516418866 683476.2962389868 774038.3102853555 730790.4288904688 732392.6048516427 647026.1012805544 654124.9968486826 616400.6461814698 517692.02682116866 654014.749898449 0.7650828237735946 1.0450472200284662 1.1835181246379274 1.1173913570052372 1.1198411120932115 0.9893142339389444 1.0001685695165907 0.9424873770464355 0.7915601703196332 1.0 19.318963647416112 1.874039414218472 1.7159142119682635 0.8954045494714612 1.0525607072417367 0.18788696565109664 0.11600240779655425 0.5483378585610572 3.0352122945009974 0.08058563481730903 0.035984684214282366 74.82374034100528 -1.874039414218472 0.15715615777027547 GVCLIDEFDKMNDQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVCLIDEFDKMNDQDR 16 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 ;; 252.3 1.4469e-26 821830000.0 1044950.0 1151440.0 1051970.0 1123980.0 1023320.0 1294730.0 1342340.0 1156450.0 1895960.0 1435000.0 False True 1039324.1053048588 1189764.9843398212 1200078.2321128445 1266275.7527557332 1153633.736307159 1205228.362566588 1277405.8859632285 1242750.1713341132 1428726.062562395 1343417.0714346908 0.7736421751697121 0.8856259233547046 0.893302800470766 0.9425782801787868 0.8587308891907602 0.8971364055091801 0.9508632226915457 0.925066532024138 1.0635014940197232 1.0 20.35747583647166 7.999999999055235 0.1488713994281716 1.037719223986967 0.22311870495581 0.6325992478255165 0.045384614393971186 47.14212609494167 0.4607664083159574 0.16080621253062796 8.288913250164164 99999999.78245978 -7.999999999055235 -0.814600519031157 GVDDLDFFIGDEAIEKPTYATK ddPTM_BT-474_Trastuzumab_2h_R1 4 GVDDLDFFIGDEAIEKPTYATK 22 1 B4DXW1;P61158;F8WDR7 B4DXW1 ACTR3 Actin-related protein 3 0 ;;; 303.94 4.5358e-56 3234660000.0 3401410.0 3132740.0 2863880.0 2661670.0 2628100.0 3653530.0 3612850.0 3374850.0 4756980.0 3608130.0 False True 3383097.186492177 3237011.357118679 3267089.410708798 2998637.149092824 2962772.9570308905 3400970.0705845347 3438082.6430727276 3626698.4441410573 3584686.0192662575 3377856.0543244923 1.0015516150136046 0.9583035230215045 0.9672080035873981 0.8877338468150014 0.8771164044239859 1.0068428067650932 1.017829826901928 1.0736687371559204 1.061231136441404 1.0 21.68767641903333 2.450462116081147 3.225812173024894 1.0464307246436122 0.9382388334529898 0.5799592068389171 0.03987603514996153 0.17478733550064307 3.789716824652191 0.015488052693582754 0.0131225770295563 282.1383460405622 -2.450462116081147 -0.10819189119062245 GVDLDAPGSINGVPLLEVDLDSFEDKPWR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVDLDAPGSINGVPLLEVDLDSFEDKPWR 29 1 Q6UN15;Q6UN15-5;Q6UN15-3;A0A0B4J203;Q6UN15-4 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 0 ; 240.86 1.8419000000000002e-45 778120000.0 500500.0 547510.0 459020.0 423960.0 469600.0 608230.0 546360.0 493030.0 701190.0 616490.0 False True 497805.36361077795 565733.5393732156 523646.0261266371 477633.2925304022 529400.7764627318 566184.4917194133 519930.4795021148 529822.402155612 528391.1199646227 577145.0803963569 0.8625307232436391 0.9802276040968688 0.9073039759206142 0.8275792495751423 0.9172750395778536 0.981008954162069 0.9008661724103242 0.9180055763305722 0.9155256414933794 1.0 19.13857449774224 3.0020630054636857 24.99965316711519 0.9345408146610911 0.8978319134829752 0.1862257913035964 0.0461232544373475 148.31820562194093 1797281.7515493294 0.013489162253414072 0.016026380277815663 1004.7615459301943 -3.0020630054636857 -0.03670890117811587 GVDLHEQSQQNK ddPTM_BT-474_Trastuzumab_2h_R1 3 GVDLHEQSQQNK 12 0 P61020;P61020-2 P61020 RAB5B Ras-related protein Rab-5B 0 ;; 203.61 1.2304e-07 544310000.0 882470.0 861470.0 870360.0 753700.0 872920.0 1059060.0 867550.0 897990.0 1109190.0 936380.0 False True 877718.879571635 890143.5081803873 992899.1226952631 849118.3427213988 984081.1877978027 985849.6749590825 825583.2921371628 965002.5737008245 835844.9868845233 876619.4267247487 1.0012541963061372 1.0154275402111128 1.1326455841903504 0.9686282517076992 1.122586561279569 1.1246039557239145 0.9417807397010711 1.100822710838494 0.9534867257133828 1.0 19.741591125155303 1.225983427342013 24.99887474568004 0.9767433377380371 1.051595180357728 0.16932505052335278 0.06574904158427346 432.478425835086 859583.2585367358 0.057521649974755736 0.01479151120771934 16.82609851528751 -1.225983427342013 0.0748518426196908 GVDLLLEGVQGES(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVDLLLEGVQGESSPTR 17 0 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 GVDLLLEGVQGES(0.499)S(0.499)PT(0.002)R;GVDLLLEGVQGES(0.5)S(0.5)PT(0.001)R 164.01 2.7765e-09 84690000.0 158203.0 170417.0 155333.0 164038.0 166611.0 171437.0 169913.0 152154.0 157773.0 168412.0 True False 157351.25262600573 176089.22682574784 177202.53622136018 184805.19398080473 187827.92326923355 159585.96370928947 161693.659059307 163508.50410235685 118891.9581998865 157663.8019752327 0.9980176213860676 1.1168652830876777 1.1239265703436279 1.1721472631354892 1.1913192560124823 1.0121915221501427 1.025559811659923 1.0370706658973141 0.7540853176847985 1.0 17.266491944297208 1.7509223874084958 1.348593369574767 0.8975444186758502 1.113113503790885 0.4745893151418039 0.08555566801204079 0.3533079362643496 1.2186467997234611 0.06806068217352657 0.026641167863678275 56.35369373680094 -1.7509223874084958 0.2155690851150348 GVDLLLEGVQGES(ph)SPTRR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 GVDLLLEGVQGES(0.428)S(0.428)PT(0.144)RR;GVDLLLEGVQGES(0.481)S(0.481)PT(0.038)RR;GVDLLLEGVQGES(0.595)S(0.381)PT(0.024)RR;GVDLLLEGVQGES(0.441)S(0.441)PT(0.118)RR 91.565 0.0015293 223203000.0 68664.0 94342.0 95310.0 97783.0 92965.0 91375.0 93367.0 90810.0 96922.0 97612.0 True False 68294.32065328762 97482.11643905671 108728.81955062912 110162.31777408325 104803.54170327475 85058.46132361346 88850.4815134234 97586.70332383663 73036.87178826155 91382.31859016235 0.7473472079383173 1.0667503073132905 1.1898233840866255 1.2055102067189465 1.1468689273830401 0.9307978024183151 0.9722940157811719 1.0678948053561665 0.7992451156314198 1.0 16.4796274272183 2.7312057972345993 24.5136699591219 0.9688262903323276 1.085054667184666 0.1488695663172983 0.13590097388299577 907.7553849846737 3025549.114721397 0.04513800173678595 0.043391750592747844 538.524910517155 -2.7312057972345993 0.11622837685233833 GVEDIPGYYYR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVEDIPGYYYR 11 0 O15296-4;O15296;I3L1D5;O15296-3;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 ;; 179.51 1.6453e-05 792770000.0 797330.0 988040.0 1046950.0 980750.0 749480.0 910590.0 1066130.0 760440.0 1084150.0 948340.0 False True 793037.2638716913 1020926.3141172068 1194351.4597474665 1104912.8494414375 844921.8354840047 847643.0565982959 1014557.2188878946 817187.8942360776 816975.7593657136 887816.129285279 0.8932449385776673 1.1499299015203586 1.345268936157939 1.244528921017608 0.9516856110332153 0.9547506838839213 1.1427560115455961 0.9204472269431966 0.9202082868480952 1.0 19.759901393314404 3.2307157654393808 24.9895080021703 0.9836157187036 1.1710083566885532 0.3326256610164966 0.12199444274717396 202.2173726829577 644156.1249218358 0.03664380915538067 0.044556804632174686 1701.0448539298727 -3.2307157654393808 0.1873926379849532 GVEEEEEDGEMRE ddPTM_BT-474_Trastuzumab_2h_R1 4 GVEEEEEDGEMRE 13 1 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F 0 ;;; 307.39 6.6098e-41 6154300000.0 3913340.0 5131200.0 5037900.0 4802800.0 4084050.0 4348590.0 4772000.0 4203550.0 5786200.0 4551090.0 False True 3892271.012252947 5301988.890124097 5747192.529788201 5410833.987557821 4604129.559439135 4047982.2087797816 4541160.129189715 4517240.246194395 4360268.541107684 4260635.539815821 0.9135423520457238 1.2444126798870225 1.3489049875494963 1.2699593609904782 1.08062037140078 0.9500888238271533 1.0658410199024018 1.0602268614577783 1.0233845397853887 1.0 22.022637216149228 3.081661550309169 5.548770368355211 1.0290117124662428 1.2076946292831174 0.3538799148540789 0.11013859317348385 0.22812377166698636 11.741027416984087 0.03296345265151001 0.03956318812729382 1206.872941328904 -3.081661550309169 0.17868291681687465 GVEFPMADLDALS(ph)PIHTPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVEFPMADLDALSPIHTPQR 20 0 Q6ZVM7-2;Q6ZVM7;Q6ZVM7-5 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 1 GVEFPMADLDALS(0.998)PIHT(0.002)PQR;GVEFPMADLDALS(1)PIHTPQR;GVEFPMADLDALS(1)PIHTPQR 164.42 1.1701e-11 120719000.0 102402.0 121948.0 114338.0 126897.0 114271.0 113526.0 117334.0 98591.0 120300.0 109847.0 True False 101850.6790099317 126006.96546087715 130435.79655628817 142962.14718895737 128822.73451271902 105678.21483145867 111658.10616059235 105948.36105495406 90653.67693741227 102836.47041525194 0.9904139902766049 1.225313985904642 1.2683807216407819 1.3901891674391256 1.2526950214504151 1.0276336245762987 1.0857831439538792 1.0302605741633912 0.8815323646499558 1.0 16.64999247395091 2.724044208633098 8.079102505629608 1.0152616553542 1.2370287609828434 0.5242014130223998 0.10445224743052584 0.15933627961998287 69.00832881196297 0.03489141786494923 0.03390101752751085 529.7173632704734 -2.724044208633098 0.22176710562864344 GVEITGFPEAQALGLEVFHAGTALK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVEITGFPEAQALGLEVFHAGTALK 25 0 P22102;P22102-2 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 ; 234.21 2.2207000000000001e-38 164812000.0 458810.0 498610.0 457800.0 409740.0 443280.0 525260.0 499180.0 486210.0 632510.0 551150.0 False True 456339.817938583 515205.93243388965 522254.260731067 461613.0419884112 499729.08047359326 488950.01252904267 475032.7563472175 522493.4591243542 476636.3856997722 515975.1351367448 0.8844221104136013 0.9985092252504545 1.0121694344683063 0.8946420293413433 0.9685138806953439 0.9476232074622357 0.9206504809990956 1.0126330195851043 0.9237584395873127 1.0 18.976942018226342 -4.999959479869267 0.22946085616336473 1.2374687340507036 0.9509938542247683 0.0878599225410821 0.04429313073045195 431.08438724053195 4.313865002981782 47.45595285104255 0.07438184039474065 1.0000933054016712e-05 4.999959479869267 -0.2864748798259352 GVEPSPS(ph)PIKPGDIK ddPTM_BT-474_Trastuzumab_2h_R1 4 GVEPSPSPIKPGDIK 15 1 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 GVEPS(0.003)PS(0.997)PIKPGDIK;GVEPS(0.002)PS(0.998)PIKPGDIK;GVEPS(0.004)PS(0.996)PIKPGDIK;GVEPS(0.002)PS(0.998)PIKPGDIK 182.76 3.2297e-07 2306040000.0 2944830.0 1758800.0 1408900.0 1400630.0 1308030.0 2548630.0 2376460.0 2289100.0 3833040.0 2395500.0 True False 2928975.3624813687 1817340.5947829464 1607260.873621669 1577949.6143901697 1474599.86719878 2372449.2069296986 2261501.5508411955 2459924.2658142764 2888438.652104561 2242617.139109271 1.3060523400997048 0.8103659617551852 0.7166898199395931 0.7036197070253838 0.657535270502956 1.05789310424694 1.008420702492011 1.0968988967913247 1.2879767133376139 1.0 21.096751913041 2.5987642774942867 6.613608217277666 1.0935923963393026 0.8234774727648136 0.3168027392169135 0.1844888954578969 0.2980012272971177 14.937656077951623 0.061552881387132795 0.05786131432147644 396.9760238600368 -2.5987642774942867 -0.27011492357448896 GVEPSPS(ph)PIKPGDIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVEPSPSPIKPGDIKR 16 2 Q92890;Q92890-1;Q92890-3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 GVEPS(0.003)PS(0.997)PIKPGDIKR;GVEPSPS(1)PIKPGDIKR 176.69 1.6081e-09 699720000.0 1200760.0 923960.0 758560.0 762910.0 760400.0 1219820.0 1191360.0 997840.0 2071710.0 1356270.0 True False 1194295.2415769782 954713.450054386 865358.6544782827 859494.3277770752 857232.4327560931 1135496.7145474162 1133729.365362837 1072303.887728852 1561164.8299917385 1269711.6874388338 0.940603487698865 0.751913571796887 0.6815394888770525 0.6769208602866231 0.6751394361701415 0.894294922052623 0.8929029925287291 0.8445254921546971 1.2295427737148754 1.0 20.27606951173653 1.6637756338201846 1.178001790002855 1.0881872054693114 0.7529073186557464 0.547979615829488 0.11176844212445634 0.3438591344178274 0.9022894199493529 0.09706592049558975 0.036489974327670024 46.10793092023054 -1.6637756338201846 -0.3352798868135649 GVESVFDIMEMEDEER ddPTM_BT-474_Trastuzumab_2h_R1 10 GVESVFDIMEMEDEER 16 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;;;;;;;; 271.01 8.9604e-35 808498000.0 439498.8 565758.0 477686.5 528869.0 528234.6 506449.1 516979.0 463462.0 531341.2 517375.2 False True 437132.5872937069 584588.9130220667 544940.6070745097 595823.7611738393 595502.1452182289 471439.465769947 491970.7507184344 498047.88785235025 400399.2808673055 484355.8717888062 0.902502917285392 1.2069409024878408 1.1250831027648205 1.2301363437039874 1.229472336154285 0.9733328183445845 1.0157216612271163 1.028268504339541 0.8266634187556452 1.0 18.885707905836803 2.7208552173987655 24.216515062320095 0.9792340316550043 1.1469203949881857 0.40468440600124167 0.10248830409534253 562.7814058756269 769741.2656114509 0.03269840279162741 0.030895123675972476 525.8419350012396 -2.7208552173987655 0.16768636333318132 GVFDCR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVFDCR 6 0 Q01813;Q01813-2;B1APP6;H0Y757;P17858;P17858-2 Q01813;P17858 PFKP;PFKL ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type 0 ; 99.511 0.090068 717900000.0 1992050.0 2523000.0 2325400.0 2270100.0 1923180.0 2518700.0 2557000.0 1797330.0 2683100.0 2351800.0 False True 1981325.024137562 2606976.529814295 2652796.1072608633 2557494.4272414027 2168085.5734190717 2344588.1973820543 2433308.1413114225 1931455.891256811 2021885.9566980123 2201706.1105227214 0.8999044035296621 1.1840710789485684 1.2048820206212925 1.1615966431751472 0.9847297798089557 1.064896075900616 1.1051920734024374 0.8772541812123379 0.918326904319661 1.0 21.070190476379036 1.7547312903189392 11.069024939740386 0.9246454872429007 1.0929385209937748 0.3734035055086167 0.09134766491248324 0.14606300232512415 82.71931400155863 0.04353973226950959 0.02383485129314458 56.85010750925327 -1.7547312903189392 0.168293033750874 GVFHGIENFINEASYMSILGMTPGFGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVFHGIENFINEASYMSILGMTPGFGDK 28 0 P00367;P00367-2;P00367-3 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial 0 65.275 0.011143 44498000.0 18943.0 21520.0 20477.0 18915.0 23932.0 33235.0 19374.0 20084.0 27231.0 27136.0 False True 18841.01299276515 22236.280190885296 23359.983610725336 21309.63706060137 26979.598343922702 30937.54267677476 18436.805604132758 21582.770064485554 20520.2849267055 25404.15724770156 0.7416507782193715 0.8753008404912594 0.9195338929355285 0.8388247975645544 1.0620150899264205 1.217814170142323 0.7257397056854081 0.849576305722098 0.8077530274523108 1.0 14.632776984809722 4.917027722226123 1.5671006458291659 0.9213860990409082 0.6067317403440461 0.15061113646416469 0.13302565080748818 3.7677397808202464 6.208253536895044 0.037633918065113015 2.0659715869822537 82609.0679562632 -4.917027722226123 -0.3146543586968621 GVGDDQLGEESEERDDHLLPM ddPTM_BT-474_Trastuzumab_2h_R1 3 GVGDDQLGEESEERDDHLLPM 21 1 P20645;F5GX30;H0YF90 P20645 M6PR Cation-dependent mannose-6-phosphate receptor 0 ;; 116.43 0.00013662 874370000.0 864816.0 1223080.0 1160480.0 1194010.0 1353840.0 1312240.0 1171100.0 1065500.0 1173020.0 1234910.0 False True 860159.9267460894 1263789.478432527 1323865.496927016 1345171.5435753963 1526243.4991616362 1221527.9374806944 1114449.418963554 1145013.02049937 883944.9386627043 1156096.9865403573 0.7440205594862198 1.0931517797779593 1.1451162941689772 1.163545584182213 1.3201690835030628 1.0565964202848936 0.9639757147871871 0.9904125984497578 0.764594103223058 1.0 20.140831001878613 2.072494741663842 2.0479557830429327 0.9149860975367564 1.1047541526156426 0.2154725358543803 0.14786463868700417 0.5069139918628524 4.0665667266590635 0.08266485107358533 0.04626639529461357 118.16660051221554 -2.072494741663842 0.18976805507888617 GVGLHGELER ddPTM_BT-474_Trastuzumab_2h_R1 1 GVGLHGELER 10 0 A0A5F9ZGY7;Q6NVU6 A0A5F9ZGY7 UFSP1 Inactive Ufm1-specific protease 1 0 104.22 0.0043809 0.0 115330.0 161440.0 147930.0 151790.0 152850.0 149160.0 150360.0 127240.0 164560.0 156330.0 False True 114709.07609436761 166813.43280745935 168757.25816939006 171006.59843662084 172314.54148707105 138848.92028487212 143086.51236902055 136735.29491162836 124006.39299102707 146352.8855591532 0.7837841779211403 1.1398028277347245 1.1530845977148938 1.168453889947411 1.1773908032542661 0.9487269058918001 0.9776815251871994 0.9342849263902107 0.8473108850382449 1.0 17.15909166528659 2.6670362583760996 8.404393519747174 0.9398784455121048 1.095934038802749 0.2821351983774806 0.11323937906722123 0.44693405792137064 48.947943646014565 0.036841602997966585 0.0347283475050218 464.5540582912678 -2.6670362583760996 0.15605559329064422 GVGSGPHPPDTQQPS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVGSGPHPPDTQQPSPSK 18 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 GVGSGPHPPDT(0.073)QQPS(0.917)PS(0.01)K 77.045 0.0091641 257630000.0 337690.0 245540.0 258500.0 244000.0 244710.0 338050.0 347860.0 312320.0 384010.0 332880.0 True False 335871.91456088604 253712.6504679356 294894.55307772104 274890.37498211645 275872.3679901938 314681.3991841046 331032.68284575327 335626.90432882565 289375.8809703715 311635.3134070937 1.0777723194743714 0.8141331856589279 0.9462809264253568 0.8820899402469937 0.885241036948267 1.009774520556442 1.0622438106470962 1.0769861112960308 0.9285721756197624 1.0 18.249499198178643 2.637131925156886 5.094265453063896 1.0308210318952171 0.9146659486982759 0.2809475358333018 0.07368501517612826 0.2406555716669569 9.660223799902445 0.023066253782155613 0.021695514026475547 433.64258551328857 -2.637131925156886 -0.11615508319694123 GVGVALDDPYENYRR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVGVALDDPYENYRR 15 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ;; 150.22 5.1631e-06 1345210000.0 690770.0 956600.0 875730.0 1070590.0 915160.0 886640.0 918820.0 779520.0 1113080.0 1026220.0 False True 687050.9710717618 988439.8527230895 999025.1720183849 1206126.584229935 1031700.2014217065 825348.663726059 874373.1663667435 837691.7407223546 838776.3485078523 960725.7610088545 0.7151374502025346 1.0288470371452645 1.0398650817578914 1.2554327500944558 1.0738758585366983 0.8590887194066322 0.9101173319726199 0.8719363784340473 0.8730653247260243 1.0 19.87376514716808 2.7379927085013738 24.999722350013236 0.8937577869036518 1.0368677467052703 0.1715263533895619 0.1289904280024289 82.42016341319842 3628112.853862025 0.04195979402271454 0.041803523934121546 547.0067789581268 -2.7379927085013738 0.14310995980161845 GVHIHQAGGS(ph)PPASSTSSSSLTNDVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVHIHQAGGSPPASSTSSSSLTNDVAK 27 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 GVHIHQAGGS(0.956)PPAS(0.003)S(0.003)T(0.018)S(0.018)SSSLTNDVAK 167.04 1.3863e-11 875520000.0 192300.0 185440.0 189080.0 189400.0 219170.0 210930.0 227870.0 26557.0 285360.0 122380.0 True False 191264.67816653865 191612.25829915298 215700.82048717822 213378.02058038054 247080.00037763384 196348.90557581183 216847.0575520663 28538.818193713545 215036.8516280959 114569.60362521074 1.6694190440967132 1.6724528342261733 1.8827054791321092 1.8624313415484948 2.1565929579882437 1.713795800656901 1.8927102014024049 0.24909589708516414 1.8769101474029852 1.0 16.805864808968643 1.7738547033168253 24.99999999920338 0.9698314720124206 1.839935019567385 0.46211638109204245 0.3900758687099574 28.60431057372797 20270.446920745024 0.16824452041329807 0.09336004369779358 59.40933666889606 -1.7738547033168253 0.8701035475549643 GVHPHIVEMDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVHPHIVEMDR 11 0 O76041-2;O76041 O76041-2 NEBL Nebulette 0 ;;; 190.86 1.2061e-06 1607600000.0 585890.0 738530.0 640430.0 770660.0 705250.0 656040.0 683030.0 215273.0 716500.0 560590.0 False True 582735.6333384982 763111.5245991871 730596.9772826489 868225.4769824501 795059.4071557526 610689.4989520484 649989.2294720148 231337.76439414424 539928.1756081118 524812.6662547548 1.1103688436049035 1.4540646094634408 1.3921100313687975 1.6543531298099345 1.5149394408286148 1.1636333080718888 1.238516657973527 0.4408006499634446 1.028801723596396 1.0 19.001443013985806 1.9281648392653081 5.883078483261614 0.7723759530270873 1.3889889363804646 0.5792252228349509 0.21155151782623224 0.14299960688535163 8.87713147656216 0.09341202514036476 0.05702241877934851 84.7549045792395 -1.9281648392653081 0.6166129833533773 GVIVDKDFSHPQMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVIVDKDFSHPQMPK 15 1 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 156.24 1.2982e-06 4723300000.0 8578400.0 7414700.0 6949000.0 6741500.0 6532100.0 8792300.0 9133700.0 8402900.0 12487800.0 9464300.0 False True 8532214.847549846 7661493.807219193 7927358.79820922 7594973.208778424 7363924.216209995 8184508.995847963 8691868.036877649 9029967.067061614 9410349.017946923 8860280.27120512 0.9629734710851701 0.8647010673147842 0.8947074534393922 0.8571933365879185 0.831116397089818 0.9237302596901663 0.9809924484133091 1.0191514027392516 1.0620825447846682 1.0 23.078920904614904 2.1836207658297404 2.0904628429157444 1.0276412143708937 0.8803669891026769 0.7622648232939819 0.035721672339797374 0.14830521564195578 1.294045548707169 0.01763125608967767 0.011095843289101558 152.62327408366605 -2.1836207658297404 -0.14727422526821687 GVLFHSGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVLFHSGGK 9 0 P43034;I3L3N5 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 81.594 0.020839 314440000.0 878320.0 985550.0 887660.0 896110.0 833160.0 970890.0 983540.0 769340.0 1294600.0 968400.0 False True 873591.2227105265 1018353.4359724441 1012634.8123209662 1009557.4341197707 939257.9874737842 903774.6595292266 935962.4127123328 826752.0574293623 975563.1767512369 906595.8829110488 0.9635949590962785 1.1232716309085207 1.116963832958771 1.1135694008207007 1.0360271926868436 0.9968881136182051 1.0323920837881913 0.9119300815427148 1.0760728072343946 1.0 19.790100084020185 2.9692926764251415 3.267498028461213 0.9935789641901329 1.0849870494553004 0.26535399523654435 0.05766125190445725 0.2796403839400174 6.106899926992757 0.017945796808256226 0.020293919281041965 931.735572068763 -2.9692926764251415 0.09140808526516753 GVLFYGPPGCGK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVLFYGPPGCGK 12 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 210.1 1.1059e-07 262510000.0 527300.0 496160.0 513480.0 525930.0 525610.0 581310.0 577070.0 542930.0 633220.0 590020.0 False True 524461.0753885377 512674.3856649465 585773.5207518312 592512.6840751817 592543.3179654522 541125.4079565501 549154.9194785226 583446.1935426777 477171.4157132846 552364.4184584636 0.9494838151454461 0.9281452036605039 1.0604838059384882 1.0726843805920079 1.0727398401568293 0.9796529064394132 0.9941895262028317 1.0562704150476545 0.863870661772481 1.0 19.075260863245575 1.2506732132415799 24.9999115601961 0.9319352945216629 1.0165733030451345 0.24487339183630252 0.057669248682967446 272.7484688280944 562948.8247188885 0.040248501619110325 0.014451233578378344 17.810381133010306 -1.2506732132415799 0.08463800852347159 GVLRPGTALVLLEAQAATGFVIDPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVLRPGTALVLLEAQAATGFVIDPVR 26 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ;; 207.07 2.5216e-25 338142000.0 230141.0 272540.0 269595.0 262522.0 250440.0 289706.0 299616.0 248653.0 293159.0 309348.0 False True 228901.946427069 281611.3291460909 307551.632638252 295757.25828301325 282332.04952582275 269679.3061145696 285122.4294357303 267208.74949434976 220913.89257934186 289605.14579385245 0.7903932293730949 0.9723975324200498 1.0619688120361448 1.021243104891306 0.9748861635448741 0.9311965275179657 0.9845212820862199 0.9226657515421188 0.7628106606109596 1.0 18.14372771133762 1.5013605767225637 5.669674833730477 0.8693742462646918 0.9671763898650653 0.11974259670665288 0.08569865074966788 0.23926362001927337 17.372064218885033 0.048890404367396806 0.021403876206389148 31.722001163846905 -1.5013605767225637 0.09780214360037343 GVLTGPEYEALDALPDAER ddPTM_BT-474_Trastuzumab_2h_R1 1 GVLTGPEYEALDALPDAER 19 0 H3BM67;H3BUP2;H3BUN4;O60936;O60936-3;O60936-1;H3BQJ5 H3BM67 NOL3 Nucleolar protein 3 0 108.71 0.00062699 24766000.0 20827.0 26418.0 20537.0 29817.0 29316.0 24010.0 19243.0 17255.0 15605.0 19138.0 False True 20714.86974609723 27297.307159981774 23428.431089195965 33591.82914279411 33049.21883045452 22350.245213460566 18312.14257460137 18542.655719114617 11759.356846286924 17916.596455133873 1.1561833073581076 1.5235766027514632 1.3076384874696843 1.874900136692458 1.8446147912755215 1.2474604353248278 1.0220770792297527 1.034942979574748 0.6563387681211832 1.0 14.129008979910187 2.3854659915826404 2.9882775023387333 0.9382044042270741 1.5466369196552607 0.6166494545334851 0.22676222288109665 0.1827114641186752 3.3084216266922266 0.09014818511536676 0.07297409289335742 242.92152093491535 -2.3854659915826404 0.6084325154281867 GVLTGPEYEALDALPDAERR ddPTM_BT-474_Trastuzumab_2h_R1 5 GVLTGPEYEALDALPDAERR 20 1 H3BM67;H3BUP2;H3BUN4;O60936;O60936-3;O60936-1;H3BQJ5 H3BM67 NOL3 Nucleolar protein 3 0 ;;;; 258.9 4.5626e-36 1655331000.0 205320.0 265387.0 250895.0 269096.0 263576.0 256535.0 272780.0 227863.0 307622.0 266385.0 False True 204214.57993319642 274220.24586517084 286218.83518156613 303163.52600896545 297140.8412626512 238801.33926843424 259584.5892792057 244867.29412486887 231812.68002361263 249384.08123632715 0.8188757635242718 1.0995900159533754 1.1477029077502856 1.2156490683207424 1.191498830998229 0.9575644848082173 1.040902803387888 0.9818882300383159 0.9295408065919688 1.0 17.928009851976583 2.7192820339963824 24.354421207149787 0.9858757566516783 1.1046051041044296 0.21984915428594876 0.10517777632918977 921.01306326206 1163503.4982974713 0.03529622683407273 0.03332735810563379 523.9405769517348 -2.7192820339963824 0.11872934745275132 GVMAVTAVTATAAS(ph)DR ddPTM_BT-474_Trastuzumab_2h_R1 7 GVMAVTAVTATAASDR 16 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 GVMAVTAVTATAAS(1)DR;GVMAVTAVT(0.002)AT(0.003)AAS(0.995)DR;GVMAVTAVTATAAS(1)DR;GVMAVTAVTATAAS(1)DR;GVMAVTAVTATAAS(1)DR;GVMAVTAVTATAAS(1)DR;GVMAVTAVTATAAS(1)DR 314.35 9.5839e-58 1863653000.0 1438420.0 1500110.0 1315950.0 1330944.0 1391510.0 1436790.0 1426260.0 1292360.0 1410220.0 1399060.0 True False 1430675.706543487 1550040.254514357 1501224.321557552 1499441.3739352357 1568710.5503740541 1337468.0891398587 1357266.3549576954 1388802.4656711076 1062690.1769798624 1309770.7930044732 1.092309978344891 1.1834438993396177 1.1461733072501221 1.1448120403537771 1.1976985276756713 1.0211466741229211 1.0362624989096545 1.060340078652498 0.8113558361934194 1.0 20.320882934729752 2.039445579074882 0.9746082259170288 0.9372461203758551 1.1526141611784757 0.6124726615242934 0.06718691122047353 0.3693548849279144 0.6479172999552237 0.05228578674560344 0.02551681711223489 109.50793236808285 -2.039445579074882 0.21536804080262062 GVMGGQSAGPQHTEAETIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVMGGQSAGPQHTEAETIQK 20 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ; 237.21 1.3632999999999998e-29 828370000.0 215046.0 225618.0 206189.0 218222.0 212603.0 264879.0 238685.0 227187.0 300598.0 265892.0 False True 213888.21622985683 233127.55874103872 235218.6189730841 245848.88282519416 239676.73185329227 246568.53818809785 227138.8946847542 244140.84757221045 226519.65070683454 248922.5449184061 0.8592561043434892 0.9365465824618465 0.9449470278000974 0.9876521345456296 0.9628566666464682 0.9905432160390298 0.9124882390994663 0.9807904207802348 0.910000541658792 1.0 17.925337375583492 4.854925443975524 1.6678082775599372 0.9614604758851106 0.8007390817827719 0.523275515694603 0.029375151698269392 0.9956862514441683 2.1466983768634615 0.007118458937866068 0.2803669884370283 71602.0479286783 -4.854925443975524 -0.16072139410233877 GVMLAVDAVIAELKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVMLAVDAVIAELKK 15 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 173.72 1.5293e-06 402730000.0 52185.0 61906.0 60250.0 50464.0 70135.0 99436.0 65063.0 52173.0 81516.0 74333.0 False True 51904.04175829854 63966.50378703277 68732.67629761196 56852.73722580953 79066.27652728633 92562.22336716633 61915.65412520338 56066.414189125906 61427.47405843805 69589.00430031697 0.7458655613795314 0.9192041821863144 0.9876944926671252 0.8169787425101952 1.1361892201542276 1.330127141461984 0.8897332954787134 0.8056792125831657 0.8827181057706016 1.0 16.086571744608765 5.124382169191053 1.3524300224710224 0.9756755889800723 0.4019320184967995 0.18365482917459475 0.14911202552817573 6.647485819346111 5.37298585315471 0.045462539848350234 6.718825542958225 133162.5702651235 -5.124382169191053 -0.5737435704832728 GVNCIDYYSGGDKPYLISGADDR ddPTM_BT-474_Trastuzumab_2h_R1 6 GVNCIDYYSGGDKPYLISGADDR 23 1 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ;;;;; 254.87 1.4277e-43 8860490000.0 3660860.0 4048960.0 3604000.0 3748850.0 3853790.0 4137800.0 4042650.0 3785370.0 4818310.0 3926650.0 False True 3641150.3365197866 4183727.185951992 4111411.8734704317 4223454.025621747 4344547.313297085 3851763.6253334903 3847091.5750772837 4067853.5311193797 3630902.0625461545 3676047.8352258047 0.9905067887388156 1.1381046638896641 1.1184326368315292 1.1489116069574532 1.1818527690704594 1.0478001913968271 1.0465292475828112 1.1065834051828947 0.9877189376462842 1.0 21.8097241093989 2.6897782019925653 24.78018984926699 1.0501192806009874 1.1188263719891074 0.313778777958014 0.05597086917297916 481.15228713172166 244412.30309144186 0.01807654777818453 0.017042779205612785 489.52874888443824 -2.6897782019925653 0.06870709138812003 GVNLPGAAVDLPAVSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVNLPGAAVDLPAVSEK 17 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ; 207.72 4.3146e-17 0.0 216556.0 223441.0 183996.0 172564.0 170390.0 234224.0 219864.0 230572.0 235539.0 241224.0 False True 215390.08655763356 230878.09861206342 209901.037478098 194410.5847066145 192088.156519346 218032.64618398936 209228.33835795653 247778.45346089246 177493.56951089887 225828.87779774333 0.9537756581801777 1.0223586144675538 0.9294694262533129 0.8608756621495163 0.8505916444015802 0.96547726008391 0.9264906259922411 1.0971956105755774 0.7859648918322373 1.0 17.78487045652529 2.514222936763606 24.83469788967749 0.9704472767969666 0.9239992780705981 0.017952268768538948 0.08536323976674247 1671.271720054378 1118694.311715009 0.02823402854472096 0.02661196059226708 326.75552282459756 -2.514222936763606 -0.04644799872636851 GVNTGAVGSYIYDRDPEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 GVNTGAVGSYIYDRDPEGK 19 1 P52943;H0YFA4;H0YHD8;P52943-2 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 0 ;;;;; 280.62 1.0972999999999998e-39 17844340000.0 11230470.0 10443370.0 9838860.0 10015280.0 9971330.0 11944250.0 12182840.0 11287130.0 15572160.0 11878860.0 False True 11170006.397342518 10790971.25729953 11224085.967095815 11283213.421110192 11241119.770796694 11118572.11124016 11593509.486231694 12129432.955484804 11734609.824253459 11120740.984796299 1.0044300476572174 0.9703464249416821 1.0092929942744646 1.0146098570712165 1.010824709087728 0.9998049704098761 1.0425123201845758 1.0907036655262035 1.055200354031841 1.0 23.406749583520753 2.1376071407921056 4.176636453029877 1.0603412404519694 1.0014548228963451 0.4337875742987616 0.02436888307572821 0.15983814492010492 5.079570881029863 0.009383654839600611 0.00675184242301055 137.27995899802215 -2.1376071407921056 -0.05888641755562429 GVNWAAFHPTMPLIVSGADDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVNWAAFHPTMPLIVSGADDR 21 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IU78 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 269.41 1.2400999999999996e-37 5470200000.0 2161950.0 3259700.0 3267200.0 3321300.0 3518000.0 3226600.0 3068300.0 2714900.0 3307100.0 2962800.0 False True 2150310.3014152288 3368197.1439697365 3727193.360988515 3741776.2394594382 3965996.447180349 3003552.7365994104 2919874.606955744 2917499.6239828635 2492109.5178696252 2773711.567419301 0.7752465420966271 1.214328549346446 1.3437566489497488 1.3490141813630745 1.4298517891210896 1.082864120364886 1.052695832275176 1.051839584999584 0.8984746457211188 1.0 21.403386341885184 2.5000577253149476 16.70769149602237 1.0187804732261478 1.2378220613412627 0.2704066991384383 0.1708972359695321 16.113101275991035 11737.405561502163 0.05783116329350896 0.05372736301295041 316.26980099854643 -2.5000577253149476 0.21904158811511487 GVPAGNS(ph)DTEGGQPGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GVPAGNSDTEGGQPGR 16 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5;G3V3T3 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 GVPAGNS(0.981)DT(0.019)EGGQPGR;GVPAGNS(0.992)DT(0.008)EGGQPGR;GVPAGNS(0.996)DT(0.004)EGGQPGR;GVPAGNS(0.851)DT(0.149)EGGQPGR;GVPAGNS(0.812)DT(0.188)EGGQPGR;GVPAGNS(0.957)DT(0.043)EGGQPGR 220.64 1.1861e-14 3804220000.0 2188477.0 2096919.0 2091956.0 2007445.0 2167700.0 2366110.0 2347534.0 2128885.0 2567976.0 2308567.0 True False 2176694.4829946514 2166713.681300697 2386485.221192484 2261587.3311720295 2443743.746035485 2202546.38492383 2233974.8119692467 2287753.2089589857 1935132.7239154463 2161232.2775963536 1.0071543468782052 1.0025362399780737 1.1042243103303309 1.0464341823023702 1.1307177721560455 1.0191159958861176 1.033657897453667 1.058541107623723 0.8953839640353849 1.0 21.043422702941328 1.2548051899153019 24.994787282486797 0.9476919862537145 1.05151478328333 0.45289764451064385 0.04509340465294561 173.92695665092816 267615.59507212235 0.029433352739369093 0.010676060619993788 17.98064182314493 -1.2548051899153019 0.1038227970296155 GVPEKS(ph)PVLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 GVPEKSPVLEK 11 1 O00515;E9PDI4;A0A0J9YYF6 O00515 LAD1 Ladinin-1 1 GVPEKS(1)PVLEK;GVPEKS(1)PVLEK;GVPEKS(1)PVLEK;GVPEKS(1)PVLEK 134.9 7.9435e-05 4792700000.0 7106800.0 5162200.0 4880460.0 4344080.0 4407920.0 6211900.0 5920800.0 5742400.0 8760100.0 5822200.0 True False 7068537.778439703 5334020.7063842015 5567586.346281215 4894040.082591438 4969242.484211251 5782485.974239717 5634388.284347543 6170927.047316367 6601290.734326051 5450622.211363794 1.2968313532540887 0.9786076707469297 1.0214588592607952 0.8978864967724309 0.9116835274055625 1.0608854824287828 1.033714696388354 1.1321509376398966 1.2111077374915604 1.0 22.37798949829834 1.8142389090730535 3.415602803766906 1.1291339260553077 1.0160924793470487 0.09601233914779284 0.11429136859218719 0.4486855639681093 9.34835634447969 0.06039311527599392 0.031209695512563976 65.19869589755905 -1.8142389090730535 -0.113041446708259 GVPHPEDDHSQVEGPESLR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVPHPEDDHSQVEGPESLR 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ;;; 234.38 2.261e-24 5011890000.0 1471020.0 1936790.0 1852000.0 1991270.0 1898420.0 1793940.0 1719950.0 952090.0 1907680.0 1594270.0 False True 1463100.191765685 2001254.8843357207 2112745.5021274276 2243364.5778304846 2140172.5341830878 1669929.150280528 1636749.4476529462 1023139.7904150578 1437557.8256023484 1492522.3236767827 0.980286973638949 1.3408542388871552 1.4155537030245178 1.5030693626772866 1.4339299990574605 1.1188637675895587 1.0966331435638863 0.685510544254095 0.9631734164357214 1.0 20.509321079385064 2.2525361912748254 2.0422331805239198 0.8603066487151597 1.3430945344680993 0.572772753145797 0.16246911740321981 0.21057382880707617 1.7811425050647918 0.07832458950429781 0.05235633118392856 178.86945810589972 -2.2525361912748254 0.4827878857529396 GVPLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVPLYR 6 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5;P13929-3;P13929-2;P13929;E5RGZ4;E5RI09;E5RG95;K7EPM1;K7EKN2 P06733 ENO1;ENO3 Alpha-enolase;Enolase;Beta-enolase 0 ;;; 128.65 0.038468 1565010000.0 2348400.0 2555860.0 2327650.0 2474200.0 2384290.0 2413960.0 2314630.0 2157020.0 3016170.0 2649530.0 False True 2335756.475331766 2640930.2550500063 2655362.8877035105 2787433.4663145565 2687915.198705978 2247088.627050616 2202662.5041547334 2317987.7855256214 2272875.3181073517 2480434.727023241 0.9416722197462931 1.0647045964476458 1.0705231864295819 1.123768118526442 1.0836468178026735 0.9059253213033899 0.8880147016801926 0.9345086811888932 0.9163213582463504 1.0 21.242161562338318 2.737206427900777 24.999174194413 0.9223668819136801 1.0617744870771815 0.6049233100332534 0.051470925821250624 78.5785393244118 1450597.4859388068 0.016371597217397917 0.016222321714943984 546.0173311815084 -2.737206427900777 0.13940760516350137 GVQDIVVGEGTHFLIPWVQKPIIFDCR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVQDIVVGEGTHFLIPWVQKPIIFDCR 27 1 P35232;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;P35232-2 P35232 PHB Prohibitin 0 ;; 267.51 8.320499999999997e-54 5009172000.0 1210360.0 1554151.0 1524217.0 1444524.0 1713332.0 2107034.0 1557979.0 1534467.0 1936466.0 1559230.0 False True 1203843.5562436369 1605879.9765308818 1738813.5048683374 1627400.5902896165 1931514.6744856155 1961379.6990045244 1482613.6037122533 1648976.7194055421 1459249.9016149864 1459718.6064760343 0.8247093315813 1.100129825985915 1.1911977398617104 1.114872813890062 1.3232102858156773 1.343669725317519 1.0156845279183573 1.1296538333414845 0.999678907387377 1.0 20.47725885338256 4.727990784898881 3.4252996041571175 1.1494957158123602 0.7872038510978909 0.3945671714129473 0.11577438008500443 0.2938472387094573 5.931779540219789 0.02881771804616467 0.27386246322966584 53455.30168343327 -4.727990784898881 -0.3622918647144693 GVQKPAGPST(ph)SPDGNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 GVQKPAGPS(0.105)T(0.447)S(0.447)PDGNSR;GVQKPAGPS(0.087)T(0.456)S(0.456)PDGNS(0.002)R 143.4 8.9028e-07 748814000.0 213717.0 226919.0 208808.0 205251.0 203638.0 267829.0 247712.0 214414.0 268638.0 219580.0 True False 212566.3714181908 234471.86173956768 238206.35140832796 231235.75555514105 229570.09224301064 249314.6116316508 235729.22420826525 230414.661452231 202435.76446477594 205566.21640810417 1.0340530420435887 1.1406147655803425 1.158781610959966 1.1248723627625463 1.11676955607945 1.212818993256627 1.146731346848742 1.1208780580696003 0.9847715641313676 1.0 17.649243660051823 1.2711152020399614 5.127907245001114 0.9905549940848104 1.1360778132058584 0.6378379092474957 0.042047101691136284 0.10407087163075364 6.403449159895746 0.03215992013840697 0.010437221969241255 18.668748370461763 -1.2711152020399614 0.14552281912104803 GVQKPAGPSTS(ph)PDGNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 GVQKPAGPS(0.003)T(0.036)S(0.961)PDGNSR;GVQKPAGPST(0.026)S(0.974)PDGNSR 226.29 1.2856e-15 1333380000.0 565280.0 567540.0 543430.0 548800.0 536190.0 617570.0 578710.0 582160.0 760610.0 613480.0 True False 562236.595288512 586430.2258148252 619940.220421764 618278.023730268 604470.6182528794 574878.8395034083 550715.5864131137 625603.735348581 573167.857151829 574327.1811733468 0.9789482610589074 1.021073431727107 1.0794199556344 1.0765257922620515 1.0524847823116255 1.0009605297261648 0.9588882512716972 1.0892810855137947 0.9979814223329126 1.0 19.13151331618171 2.7492927938189133 23.874505368740376 1.0168260527557782 1.0445764368775703 0.12076471969062286 0.04080844895753872 1036.0527273737605 2304766.079587798 0.013378674615743987 0.01404641635798032 561.4263523951678 -2.7492927938189133 0.027750384121792093 GVQLQTHPNVDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVQLQTHPNVDKK 13 1 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 0 ; 190.27 2.9565e-06 3600500000.0 5741500.0 4898900.0 4304600.0 4314100.0 4110800.0 5806800.0 5743400.0 5056200.0 7830900.0 5336100.0 False True 5710588.401940622 5061956.9250524165 4910650.263746062 4860264.617665358 4634286.013379465 5405389.583736889 5465569.800081359 5433519.31886337 5901079.623683962 4995545.529534946 1.1431360935814034 1.0132941227589318 0.9830058068159 0.9729196919395944 0.9276836705781937 1.0820419014858016 1.0940886771559801 1.0876728651033227 1.1812683096961616 1.0 22.252210802853362 2.5373266820214653 12.463498795040849 1.0957197405384842 1.0049253405763148 0.27423046516616434 0.06572032805874298 1.8150979613573894 374.293313915483 0.021213305514970134 0.019989238159966748 344.60905275568314 -2.5373266820214653 -0.09079439996216943 GVQVETISPGDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVQVETISPGDGR 13 0 P62942;A0A087WZM5;Q1JUQ3;A0A087WTS4;A0A087WV48 P62942 FKBP1A;FKBP12-Exin Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase 0 ; 136.53 0.00016578 247940000.0 387180.0 452700.0 386470.0 471230.0 432290.0 438500.0 411410.0 411560.0 505870.0 421040.0 False True 385095.4658997415 467767.84583707165 440881.6167425412 530887.6696837 487339.5691164271 408187.5271179703 391508.5265611779 442272.697059334 381205.1168107124 394168.8667295204 0.9769809297597188 1.1867194122108458 1.1185094865573826 1.3468533780675183 1.2363725556509786 1.0355651132591086 0.9932507602885644 1.122038634681979 0.967111177434255 1.0 18.58845430462666 2.7237599527953424 23.73675340497344 1.036048298384054 1.1804660838147578 0.37499967088216424 0.09558881161950318 480.4382108093607 770506.8296170383 0.03166645408720797 0.02999285254540595 529.3707643787318 -2.7237599527953424 0.14441778543070383 GVQVPAS(ph)PDTVPQPSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVQVPASPDTVPQPSLR 17 0 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 1 GVQVPAS(0.983)PDT(0.017)VPQPSLR;GVQVPAS(0.99)PDT(0.01)VPQPSLR 220.97 4.0216e-15 204780000.0 226590.0 265050.0 246530.0 270660.0 265770.0 247020.0 259630.0 238320.0 283760.0 265350.0 True False 225370.06461651568 273872.0290238915 281239.2811228261 304925.52824860526 299614.23415779456 229944.08882253332 247070.70501708452 256104.64856443898 213831.15018919442 248415.1358224355 0.9072316140092519 1.1024772227230644 1.1321342404991497 1.2274836927270116 1.2061029742243872 0.9256444381347798 0.9945879674324194 1.0309542843134158 0.8607814877352669 1.0 17.922393553432862 2.7295731365318825 24.95604576090039 0.9725095643829672 1.1215769115501548 0.40628999851684966 0.09171670695051491 698.05515556238 1938325.6290697337 0.030779340359477294 0.029411021167122055 536.5042127993968 -2.7295731365318825 0.1490673471671876 GVQYLNEIKDSVVAGFQWATK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVQYLNEIKDSVVAGFQWATK 21 1 P13639 P13639 EEF2 Elongation factor 2 0 233.68 8.5011e-30 570220000.0 761350.0 855480.0 727150.0 779310.0 818050.0 1025000.0 926590.0 839790.0 1274100.0 955780.0 False True 757250.9761939364 883954.1346514188 829526.3994988973 877970.5660955462 922223.8185377725 954144.162590465 881767.3017824593 902459.3941672138 960115.1270653108 894781.3021155737 0.8462972733153142 0.9878996494019759 0.9270716738689206 0.9812124638944947 1.030669523778956 1.0663434297682985 0.985455663520969 1.0085809706053162 1.0730165290616438 1.0 19.77117558373172 6.368891966405798 0.5346228856733096 1.0262802520593692 1.3963894726924831e-12 0.6734945605828876 0.03592496630247607 12.644353064987246 0.6899164514148958 0.017798015729988372 11.82445710028281 2338255.5099493447 -6.368891966405798 -1.0262802520579728 GVS(ph)CFR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVSCFR 6 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 GVS(1)CFR;GVS(1)CFR;GVS(1)CFR;GVS(1)CFR 93.561 0.047706 1694370000.0 3390000.0 2683390.0 2285300.0 3616210.0 2427570.0 1936370.0 1822080.0 2093570.0 1977620.0 2385260.0 True False 3371748.616664406 2772705.014006494 2607050.375816313 4074021.8152216347 2736706.6501653213 1802513.2996246833 1733939.0293784554 2249802.824333052 1490262.0497503337 2233030.664676172 1.509942818968573 1.2416779840363652 1.1674942118156628 1.8244361260540225 1.2255571289085683 0.8072049023500888 0.7764958434325425 1.0075109401416626 0.6673719592500299 1.0 21.09057163216055 2.881395183484946 4.343451991798058 0.8610810440507638 1.4149236377602266 0.6778410906448855 0.1903057471333797 0.14000929738777437 4.330462769877151 0.058844945602338154 0.06312009953131979 761.0184458404569 -2.881395183484946 0.5538425937094628 GVS(ph)QEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVSQEK 6 0 Q12872-2;Q12872 Q12872-2 SFSWAP Splicing factor, suppressor of white-apricot homolog 1 GVS(1)QEK 79.893 0.06917999999999999 479250000.0 858190.0 585660.0 604920.0 592580.0 587710.0 512730.0 735220.0 757810.0 1035700.0 824530.0 True False 853569.6003938728 605153.3390610531 690087.4779411027 667600.5672414033 662551.3848699147 477286.18193659507 699654.5997868525 814361.6302812081 780465.6126689762 771907.7894843511 1.1057921840173077 0.7839710225819938 0.8940024797548606 0.864870877501279 0.8583297045266398 0.6183202040951435 0.9063966050326231 1.0549985909913113 1.0110865874152428 1.0 19.558068990843157 1.8995184829070277 5.271401803635234 1.0217394513649731 0.846876703225907 0.3021825624250031 0.11319377674450863 0.2653374282163574 10.888340216275965 0.05057320244484547 0.030108814830241946 79.34480239894877 -1.8995184829070277 -0.1748627481390661 GVS(ph)SESSGDREK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVSSESSGDREK 12 1 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 SF3B2 Splicing factor 3B subunit 2 1 GVS(0.956)S(0.044)ESSGDREK;GVS(0.985)S(0.015)ESSGDREK 175.66 1.6411e-05 645930000.0 749510.0 797500.0 642250.0 652040.0 717660.0 851590.0 764100.0 786340.0 1184550.0 910990.0 True False 745474.7214383892 824044.3054010702 732673.2174629262 734588.1971448323 809049.7470959191 792721.5877272347 727137.5638545387 845020.6837536137 892633.5246567872 852849.838262222 0.8740984496841533 0.9662243790538245 0.8590881824587441 0.8613335715014484 0.9486426693173202 0.9294972598488083 0.8525974107425097 0.9908200082155599 1.0466479380187594 1.0 19.70193222223471 1.5838153166582192 5.133129658424815 1.021792963957393 0.90174301369171 0.6490658170047614 0.03868389529710225 0.0890466812749774 5.032869117592104 0.021482181262278785 0.00982941776623927 38.354410901702316 -1.5838153166582192 -0.1200499502656831 GVSFYEVPPHLFAVADTVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVSFYEVPPHLFAVADTVYR 20 0 O00159-3;F5H6E2;O00159-2;O00159;I3L3F5;I3L501;I3L3Y6 O00159-3 MYO1C Unconventional myosin-Ic 0 ; 171.35 7.9524e-12 350650000.0 297730.0 423790.0 391330.0 409170.0 426170.0 423000.0 424820.0 378610.0 440170.0 439380.0 False True 296127.05476091284 437895.5939635355 446425.8624986634 460970.88004685484 480440.2233925093 393759.0056348947 404269.8336300029 406863.8007426248 331696.00147581653 411338.3922278566 0.7199110522046197 1.064562905475081 1.0853007424878796 1.1206609661456177 1.1679926612013751 0.957262956910611 0.9828157090818351 0.9891218724782851 0.8063823064978506 1.0 18.64996620635735 1.7974304490473474 1.5563829262425075 0.9150078624893285 1.0349728978155257 0.09203767652200534 0.12470580270913542 0.8250944950965842 3.824243839795996 0.09353720362337367 0.038429262986117235 62.72352381068537 -1.7974304490473474 0.11996503532619718 GVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCK 38 1 K7ELL7;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70;K7EIP3 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 85.23899999999998 0.00046282 129010000.0 70534.0 68049.0 71942.0 53268.0 60821.0 95871.0 80975.0 62606.0 101950.0 60886.0 False True 70154.25278106406 70313.96982851092 82070.80826892622 60011.723338308926 68566.19383568944 89243.66342605915 77057.92989546055 67277.97762682654 76825.78856000974 57000.203352872864 1.2307719736850415 1.2335740171524674 1.439833604818004 1.0528334954665435 1.2029113898281143 1.5656727200353258 1.3518886839475943 1.1803111860904558 1.3478160434692141 1.0 15.798679445768196 -1.0250708310939183 3.9738852502363518 0.9999632722651276 1.2858409875418229 0.28570627832463047 0.13722008299515032 4089519.154165062 1582811.5921374871 1293.1230898529227 0.0322164011167235 0.09439069175903854 1.0250708310939183 0.28587771527669525 GVSMSLPS(ph)SPLLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 GVSMSLPS(0.5)S(0.5)PLLPR;GVSMS(0.009)LPS(0.495)S(0.495)PLLPR 128.31 7.8111e-05 203266000.0 250914.0 317230.0 260440.0 263750.0 269710.0 294940.0 291540.0 274850.0 338970.0 285650.0 True False 249563.10690316587 327788.80878041533 297107.6882149387 297140.7229571036 304055.9698035849 274551.4920140802 277437.0964090464 295360.70266002073 255435.38546529177 267419.57244273124 0.9332267815087117 1.2257472622001606 1.1110169891493833 1.111140520654064 1.1369996856482878 1.026669400097393 1.0374599505743374 1.104484237866595 0.9551858270209226 1.0 18.028745534605196 2.73156364013385 24.404042386227896 1.038266594868631 1.1112388054693594 0.1973605045907033 0.07638770801938738 673.587668257022 2349333.689515687 0.02332033357811285 0.022395945341298722 538.9688183655389 -2.73156364013385 0.07297221060072845 GVSMSLPSS(ph)PLLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 GVSMSLPS(0.012)S(0.988)PLLPR;GVSMSLPS(0.056)S(0.944)PLLPR;GVS(0.001)MS(0.365)LPS(0.162)S(0.472)PLLPR 297.03 1.2021e-43 1338390000.0 1939950.0 2529620.0 2155140.0 2336640.0 2259710.0 2415200.0 2287010.0 2066190.0 2641090.0 2277540.0 True False 1929505.5247487093 2613816.8725124216 2458564.9791873093 2632458.3844189 2547470.674149488 2248242.9087692597 2176378.589073379 2220379.5897002267 1990228.7582928524 2132185.4472999037 0.9049426386396838 1.2258862735520648 1.1530727696789773 1.2346291865712327 1.1947697501525871 1.0544312229577992 1.0207266876478496 1.0413632606450849 0.93342197828673 1.0 21.023901491597968 2.5420401460930986 3.785030700809766 1.008911393306968 1.152524334538497 0.3548631938222321 0.09078682812017011 0.25954422485059897 7.307231012168164 0.030619828573675713 0.02780802319126296 348.3695167545197 -2.5420401460930986 0.143612941231529 GVTDHTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GVTDHTQR 8 0 Q14204;A0A2R8Y706;A0A2R8Y6H2;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 102.51 0.0049505 10633000.0 15406.0 22799.0 20441.0 21050.0 23381.0 23778.0 24593.0 16919.0 20091.0 19960.0 False True 15323.055807767507 23557.85093271347 23318.915123642924 23714.92784169487 26358.431759955543 22134.282827391322 23403.342635616664 18181.581692941207 15139.842255607211 18686.13571138427 0.8200227186850702 1.260712824554794 1.2479260283567455 1.2691188915665894 1.4105876232022136 1.1845297052994384 1.2524442183815725 0.9729984826057069 0.8102179332018589 1.0 14.189680630471146 1.63696876439065 4.115630449929548 0.9015252352329761 1.2195542724219997 0.424220739732594 0.1491633166987797 0.15151167732519907 5.934130111622889 0.084865467563733 0.03863016368272574 43.34797002582394 -1.63696876439065 0.31802903718902353 GVTECYECHPKPTQR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVTECYECHPKPTQR 15 1 Q9UBT2;Q9UBT2-2;K7EPL2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 ;;; 279.86 6.6903e-34 5211440000.0 4182040.0 4629060.0 4304760.0 4449190.0 4454480.0 4945700.0 4646520.0 4498870.0 5618180.0 4677360.0 False True 4159524.3613083228 4783135.463774142 4910832.790355319 5012456.997814277 5021731.624228511 4603815.399925531 4421750.07616987 4834598.524198972 4233654.818755028 4378846.88031063 0.9499131792005595 1.092327636593411 1.1214899549095332 1.144697938709083 1.1468159909424087 1.0513762014895898 1.0097978296642782 1.104080287880724 0.9668423981189078 1.0 22.06211957178001 2.496656841007317 23.06936824674884 1.0355271931655659 1.0961221048497067 0.20947270791157502 0.061891652860642764 505.34088982344196 596752.2617277615 0.02067773382105163 0.01919731879326234 313.8028192314409 -2.496656841007317 0.060594911684140884 GVTIPYRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVTIPYRPK 9 1 F8VZX2;Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3;Q15366-5;Q15366-4;Q15366-8;Q15366-7;F8VRH0 F8VZX2;Q15366;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 ; 142.92 9.4092e-05 1611230000.0 800930.0 824060.0 766260.0 638470.0 722460.0 790420.0 754140.0 701040.0 931020.0 872080.0 False True 796617.8818716891 851488.3389452103 874142.7475486832 719300.2365361954 814460.9986440912 735780.1258485431 717659.367105435 753355.1646089907 701582.5960288395 816423.1077747497 0.9757414682234534 1.0429498269176074 1.070698194630055 0.8810385567071057 0.9975967006421382 0.9012240330310984 0.8790287294311082 0.922750908732045 0.8593370145304674 1.0 19.638957490957672 3.7375153397833842 24.999816933211992 0.9171988040291832 1.0311118314150198 0.5069911416544635 0.049488871681962275 69.94965517301667 1672993.5131152817 0.012470000699998617 0.020561659871608864 5464.0584922755515 -3.7375153397833842 0.11391302738583664 GVTIPYRPKPS(ph)SSPVIFAGGQAYTIQGQYAIPQPDLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK 38 2 Q15366-5;Q15366-4;Q15366-8;Q15366-7;F8VRH0 Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 GVT(0.001)IPY(0.001)RPKPS(0.333)S(0.333)S(0.333)PVIFAGGQAYTIQGQYAIPQPDLTK 181.26 1.6924e-23 961150000.0 1240300.0 1080800.0 907200.0 969190.0 1024600.0 1283800.0 1298200.0 1350900.0 1961100.0 1479500.0 True False 1233622.3626102852 1116773.7746426028 1034925.8744762422 1091889.354626711 1155076.7367200057 1195053.9277401378 1235401.1063944031 1451711.0177312046 1477813.182393673 1385077.0433363232 0.8906525225764919 0.8062900038777329 0.7471973342243479 0.7883239130125265 0.8339440338551124 0.8628068261542587 0.8919367426801139 1.048108496718981 1.066953776689541 1.0 20.40153479610253 1.9644575620289564 1.746488901809688 1.050350626735706 0.8114027735385523 0.8488436918519255 0.040758603567124414 0.12725776668885003 0.722008758896507 0.026839536910373794 0.012975489509568302 92.14198459161891 -1.9644575620289564 -0.23894785319715361 GVTIPYRPKPS(ph)SSPVIFAGGQLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVTIPYRPKPSSSPVIFAGGQLTK 24 2 F8VZX2 F8VZX2 PCBP2 1 GVT(0.02)IPYRPKPS(0.327)S(0.327)S(0.327)PVIFAGGQLTK 132.6 2.5045e-05 1077500000.0 498870.0 451190.0 446630.0 423950.0 389230.0 534280.0 523480.0 590330.0 790860.0 689720.0 True False 496184.1393496675 466207.5863998855 509511.6218224471 477622.0265314267 438796.1333530432 497346.48115983757 498157.27251220244 634383.422235001 595963.149981062 645701.4791009991 0.768442005182484 0.7220172192403518 0.7890823210314352 0.7396948001364547 0.679565011937053 0.7702421277589234 0.7714978029875039 0.9824716881835921 0.9229700864412035 1.0 19.300507806290902 1.7890952612341164 4.223078488458683 0.9656855016044412 0.744705459972082 0.8969687283305389 0.03416974969460714 0.060071788933174004 2.012826681217065 0.017137312388728083 0.009096980242059946 61.53118247715484 -1.7890952612341164 -0.22098004163235918 GVTIPYRPKPSS(ph)SPVIFAGGQAYTIQGQYAIPQPDLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK 38 2 Q15366-5;Q15366-4;Q15366-8;Q15366-7;F8VRH0 Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 GVT(0.002)IPYRPKPS(0.066)S(0.464)S(0.464)PVIFAGGQAY(0.001)T(0.003)IQGQYAIPQPDLTK 137.18 1.3385e-09 913650000.0 423080.0 382030.0 357940.0 312150.0 342350.0 509390.0 486600.0 493850.0 787910.0 574730.0 True False 420802.1842886069 394745.637607988 408334.8407297472 351668.1579945396 385946.2432325724 474177.0682750805 463061.2990074847 530703.5947194871 593740.1379530868 538050.239348892 0.7820871612246286 0.7336594405862166 0.7589158239644747 0.6535972522196105 0.717305216144157 0.8812877192451285 0.8606283672837813 0.9863458017632419 1.103503157384683 1.0 19.037381362229045 2.0567119853079703 1.157628724972317 1.0499651644501062 0.7288067851218133 0.8600988618693507 0.05142384942399574 0.16842482630205993 0.4194771025666991 0.03871186462182731 0.01878715252105278 113.94938492925854 -2.0567119853079703 -0.32115837932829294 GVTIPYRPKPSSS(ph)PVIFAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3 Q15366;Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 GVTIPYRPKPS(0.002)S(0.007)S(0.991)PVIFAGGQDR;GVTIPYRPKPSS(0.038)S(0.962)PVIFAGGQDR;GVTIPYRPKPS(0.008)S(0.047)S(0.945)PVIFAGGQDR;GVTIPYRPKPS(0.01)S(0.2)S(0.79)PVIFAGGQDR 263.49 3.6074e-44 54986850000.0 8070970.0 7696810.0 7292960.0 7021830.0 7673500.0 8914980.0 8823040.0 8626150.0 10595830.0 8928430.0 True False 8027516.794289062 7952993.668030104 8319745.376455304 7910792.9580355575 8650674.740602156 8298708.41620562 8396235.8479141 9269877.115702163 7984629.673347794 8358609.953386499 0.960388968866373 0.9514732368637372 0.9953503540483488 0.9464244655692412 1.034941789226249 0.9928335527659585 1.0045014535595547 1.1090213764486598 0.9552580773448837 1.0 22.99483160970474 3.101452528133997 1.1380460893135333 1.0309527890512462 0.9612471346812909 0.20153708467606357 0.04167112301529493 0.5880118011921692 1.6297037579652807 0.017519454155825724 0.02374771501831592 1263.1430246092905 -3.101452528133997 -0.06970565436995535 GVTIPYRPKPSSSPVIFAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3 Q15366;Q15366-2 PCBP2 Poly(rC)-binding protein 2 0 199.75 1.4381e-24 5623800000.0 1844500.0 1881500.0 1809200.0 1802100.0 1714900.0 1801400.0 1946700.0 1562000.0 1998700.0 1920600.0 False True 1834569.4169432162 1944124.5901092305 2063919.6341516972 2030245.6752265235 1933282.3499913514 1676873.4580394784 1852530.6838838267 1678564.3716752855 1506147.1662078595 1798025.6636916143 1.0203243780050237 1.0812551952777212 1.1478810763546963 1.1291527791978937 1.0752251144302551 0.9326193123387392 1.030313816589417 0.9335597403147978 0.837667223901307 1.0 20.777982182287985 2.801667647716728 4.601472898227456 0.9487701074200884 1.0977038549508225 0.6176175070635442 0.05664578355607717 0.1509963611625518 6.482393368469888 0.01826462261854153 0.01920247669888705 633.3848157165484 -2.801667647716728 0.14893374753073407 GVVDSDDLPLNVSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GVVDSDDLPLNVSR 14 0 P14625 P14625 HSP90B1 Endoplasmin 0 ;;;;; 367.11 1.2152999999999996e-96 6986930000.0 4261180.0 6001580.0 5370730.0 5587400.0 5503820.0 5432050.0 5717190.0 5087710.0 6260030.0 5214260.0 False True 4238238.280341601 6201338.962268271 6126882.10077798 6294764.267110978 6204698.853303053 5056545.169170277 5440627.677913275 5467380.755067897 4717329.48660439 4881481.462647417 0.8682278756504875 1.270380520692389 1.2551275975664844 1.2895192402711868 1.2710688140026254 1.0358628231741593 1.1145443692748576 1.120024893447557 0.9663725085716087 1.0 22.21888762171509 2.728989488171577 24.75666847088942 1.0656829164843113 1.2043333063303256 0.24336541971109205 0.12329881080528045 898.7612685867106 2324729.543293833 0.039582523732550626 0.037762445849388114 535.7836890446948 -2.728989488171577 0.1386503898460143 GVVDSEDLPLNISR ddPTM_BT-474_Trastuzumab_2h_R1 9 GVVDSEDLPLNISR 14 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 ;;;;;;;; 333.38 3.8800999999999974e-68 9329449000.0 7452419.0 9509740.0 8584297.0 9296840.0 8797010.0 8858300.0 9152630.0 7926610.0 9712120.0 9223860.0 False True 7412296.004145584 9826265.947140776 9792891.401552882 10473818.990773518 9917257.079536665 8245946.57119525 8709882.320458025 8518133.88871001 7318698.161740476 8635185.357856164 0.8583829642292492 1.1379334131144023 1.1340684647427348 1.2129234702813405 1.148470666065563 0.9549240959481212 1.008650302165651 0.9864448226302795 0.8475438405131667 1.0 23.04179571546167 2.731103568093891 24.145775643804864 0.9650986950257219 1.1089034610706552 0.33532755760606214 0.09701310928389541 422.6788372964702 1368621.7661281198 0.0314505758523186 0.03020753922879861 538.398161359238 -2.731103568093891 0.1438047660449333 GVVEVTHDLQK ddPTM_BT-474_Trastuzumab_2h_R1 3 GVVEVTHDLQK 11 0 P50454;E9PKH2 P50454 SERPINH1 Serpin H1 0 ;; 167.12 1.9623e-05 4412530000.0 7233800.0 8407100.0 7369300.0 7091070.0 6970220.0 8185400.0 8643200.0 7526640.0 10524400.0 7895800.0 False True 7194854.024550731 8686925.24130073 8406833.384896128 7988798.734936213 7857836.201269298 7619562.564359031 8225095.395769607 8088316.096303509 7930802.639734843 7391883.284065524 0.9733451879658972 1.175197836257357 1.1373060236243857 1.080752824135825 1.063035751417804 1.0308012547741803 1.112719868494165 1.0942158832160223 1.072906908153035 1.0 22.817510546474622 3.4935027613885232 22.870617253220246 1.0708436734890119 1.1042336605919207 0.045811174212152084 0.05678803178563727 688.1240205945413 960702.0403442567 0.014781685622314817 0.02217056486156911 3115.320704154262 -3.4935027613885232 0.03338998710290886 GVVHDDMECSHYMK ddPTM_BT-474_Trastuzumab_2h_R1 2 GVVHDDMECSHYMK 14 0 F8VQZ7;P50579-3;P50579;F8VRR3;P50579-2 F8VQZ7 METAP2 Methionine aminopeptidase 2 0 ; 202.13 9.76e-09 447340000.0 512750.0 614850.0 556250.0 536380.0 542230.0 605750.0 550250.0 359670.0 730920.0 565740.0 False True 509989.4109718806 635314.9105653258 634565.1649883263 604285.6530037194 611279.7764509941 563875.928282122 523632.3053408717 386510.40176725324 550794.5598262126 529633.9888456184 0.9629091442628996 1.19953576232909 1.1981201704433926 1.1409495344526708 1.1541551133893984 1.0646520807909945 0.9886682432941513 0.7297688779560484 1.0399531967854165 1.0 19.01463618337495 2.218044300830172 2.7683463280005407 0.8887955082561196 1.1355599759048753 0.4282405997674372 0.1014719024803999 0.19899642043545104 3.1287391237122453 0.042063202127894085 0.029776707173228303 165.21303175513475 -2.218044300830172 0.2467644676487557 GVVIPTWNIS(ph)PIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVVIPTWNISPIKK 14 1 A4PB68;Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2 A4PB68;Q3T8J9-3 GON4L GON-4-like protein 1 GVVIPT(0.001)WNIS(0.999)PIKK 83.38600000000002 0.0052373 199960000.0 85457.0 110330.0 107820.0 89182.0 122970.0 156340.0 115420.0 104280.0 151680.0 151430.0 True False 84996.90900716528 114002.26735410656 123000.11881175969 100472.43205596354 138629.50059970634 145532.58378477395 109836.69365278234 112061.9031231107 114300.4964078692 141765.60775425454 0.5995594443082718 0.804160255509399 0.8676301732150429 0.7087221904351357 0.9778782230455745 1.0265718610472105 0.7747767275345104 0.7904731260163317 0.8062639325470596 1.0 17.113148052567944 5.290354193420241 1.2401444287326628 0.8612470398053831 2.115962417624127e-17 0.39678439434859647 0.09951217254487929 5.563181918914976 2.8212533557138455 0.028758778503456046 8.561289576650374 195143.5464609322 -5.290354193420241 -0.8612470398053831 GVVMHTFGGYANSK ddPTM_BT-474_Trastuzumab_2h_R1 1 GVVMHTFGGYANSK 14 0 Q6UXN9 Q6UXN9 WDR82 WD repeat-containing protein 82 0 209.19 6.987899999999998e-09 660190000.0 696070.0 872790.0 722200.0 696500.0 763600.0 802060.0 752940.0 709430.0 965890.0 802560.0 False True 692322.4364606477 901840.2875373027 823879.482525068 784676.8285862464 860839.933788207 746615.4800461546 716517.4156898796 762371.2690125463 727859.3517629022 751339.9336938151 0.9214503388060056 1.2003092702707576 1.0965469098316476 1.044369922850416 1.1457396248806537 0.9937119625407986 0.9536527789322504 1.0146822161634586 0.9687483908708602 1.0 19.519106257935924 2.642345146006899 7.703836839629192 0.9860360430516113 1.0868905933523816 0.3211991085160594 0.06927436689829607 0.3204361303219324 22.817509431544927 0.021125606903224497 0.01989735597907933 438.8793489445473 -2.642345146006899 0.10085455030077028 GVVPLAGTDGETTTQGLDGLSER ddPTM_BT-474_Trastuzumab_2h_R1 1 GVVPLAGTDGETTTQGLDGLSER 23 0 P09972;A8MVZ9;C9J8F3;J3KSV6;J3QKP5;K7EKH5 P09972 ALDOC Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase 0 166.35 2.8083e-11 106810000.0 76592.0 99924.0 80353.0 82616.0 69777.0 75147.0 88402.0 66949.0 85964.0 81896.0 False True 76179.6371821712 103249.90993466643 91666.00395920358 93075.1771291907 78662.6873493186 69952.26476701043 84125.65753156516 71945.07434013356 64779.32405858433 76669.32716530694 0.9936129609944284 1.3466912225804333 1.1956020399339395 1.2139819217209389 1.0259994479893344 0.9123891829151725 1.0972531081456032 0.9383814492725703 0.8449183846222291 1.0 16.226361898645276 3.139627364366047 3.9412771374919533 0.9652814968570894 1.1999652551419682 0.5335067207943367 0.10074799551556972 0.16564049863260888 4.820722933411233 0.02875403754216452 0.03531017647326679 1379.200368020283 -3.139627364366047 0.23468375828487875 GVVPLAGTNGETTTQGLDGLSER ddPTM_BT-474_Trastuzumab_2h_R1 4 GVVPLAGTNGETTTQGLDGLSER 23 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;; 425.39 5.0844999999999955e-179 901770000.0 129193.0 145764.0 137008.0 139452.0 124960.0 153090.0 141539.0 115552.0 144265.0 150454.0 False True 128497.43924269167 150615.6666238012 156297.53550511572 157106.60890166418 140872.9153040524 142507.24863509682 134692.21783851294 124175.07700116684 108712.82380195973 140851.89690985018 0.9122876018129471 1.0693194051919666 1.1096587190810163 1.1154028617890575 1.0001492233662688 1.0117524276318843 0.9562683981794037 0.8816003172512681 0.7718236401994607 1.0 17.103819467642065 2.1069295690286665 1.6577636942406253 0.8704913005699858 1.0495457485526405 0.4517971424847057 0.07515248471822314 0.3095796225438838 1.6266152558813602 0.04410832384656756 0.023852621137010893 127.9173839486557 -2.1069295690286665 0.17905444798265469 GWAFGSNS(ph)LPIAGSVGMGVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 GWAFGSNSLPIAGSVGMGVAR 21 0 M0QZ22;Q5PRF9;A0A087WZT0 M0QZ22 SAMD4B Protein Smaug homolog 2 1 GWAFGSNS(1)LPIAGSVGMGVAR;GWAFGS(0.085)NS(0.915)LPIAGSVGMGVAR 233.38 9.9398e-30 243580000.0 298820.0 317040.0 284480.0 367690.0 298730.0 340910.0 337430.0 296630.0 319170.0 351710.0 True False 297211.18632202287 327592.4847452729 324532.3112555127 414239.51629989536 336771.49478856835 317343.6941158204 321107.2217922229 318766.03685661964 240514.830158885 329263.56668592 0.9026543365046171 0.9949247894096916 0.9856307957845808 1.258078810447415 1.0228021829995242 0.9637983859250672 0.9752285229252912 0.9681181555100088 0.7304629315040762 1.0 18.328883359678713 1.4897567207598146 3.980140872570565 0.8597472099247347 1.0188822356285623 0.22425044511743453 0.10732765647526715 0.2648866509832537 8.69864487198778 0.07202968109288398 0.027963054269392336 30.885648229255292 -1.4897567207598146 0.15913502570382754 GWAPPGPS(ph)PSSGALDLLDTPAGLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GWAPPGPSPSSGALDLLDTPAGLEK 25 0 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3;A6NC58 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 GWAPPGPS(0.707)PS(0.146)S(0.146)GALDLLDTPAGLEK 138.66 4.6169e-06 46403000.0 102170.0 97229.0 103480.0 102630.0 91302.0 112450.0 101000.0 97803.0 106520.0 101170.0 True False 101619.92807215425 100465.20848882831 118049.08453571591 115622.94747710896 102928.76851064798 104676.59617882708 96114.24414253165 105101.55649357096 80269.5732948723 94713.2439840052 1.072922051844359 1.0607303082744635 1.246384133518345 1.2207685283869583 1.08674103199369 1.105194920749462 1.0147920195697557 1.1096817305858524 0.8475010454549304 1.0 16.531278554916735 1.7786201683276173 0.9975777061143947 0.9516658176546446 1.141645342407091 0.4487853021663988 0.07929347699415247 0.5070702627456957 0.9376868868483003 0.06974510960075252 0.02896390999302364 60.06481839473171 -1.7786201683276173 0.18997952475244628 GWAPPGPSPSS(ph)GALDLLDTPAGLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GWAPPGPSPSSGALDLLDTPAGLEK 25 0 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3;A6NC58 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 GWAPPGPS(0.221)PS(0.17)S(0.609)GALDLLDTPAGLEK 161.0 1.3744000000000006e-11 44773000.0 101030.0 90406.0 76267.0 76982.0 76825.0 98822.0 98058.0 90602.0 94628.0 93923.0 True False 100486.06570548833 93415.10905841894 87004.73067535226 86727.91330685776 86608.20837254975 91990.66774196576 93314.55992206311 97363.18130763386 71308.19735023638 87928.75372847407 1.1428123502784029 1.062395463341683 0.9894912299567532 0.9863430292060715 0.9849816436611601 1.0461955144506536 1.0612519336987367 1.1072962731655849 0.8109770049787999 1.0 16.424047400186016 4.59550152727223 2.8375489996362395 1.0114312922691338 1.148514304478383 0.2565948976940994 0.07430148187869963 0.48322232373782026 6.254244569794336 0.018419924968156393 0.12821702328791293 39400.4813228898 -4.59550152727223 0.13708301220924923 GWDDLFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GWDDLFNK 8 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 148.38 0.0012147 721520000.0 1524580.0 1533700.0 1366700.0 1470830.0 1386970.0 1656230.0 1699920.0 1527160.0 2041390.0 1750510.0 False True 1516371.8306767603 1584748.2773587734 1559119.480430645 1657036.927192403 1563592.4082847412 1541738.718446055 1617688.375274977 1641124.4339613502 1538316.7877245538 1638790.9531129878 0.925299122378187 0.9670228373841356 0.95138399285705 1.011133802053737 0.9541134000737542 0.9407781483766579 0.9871230813192341 1.0014239039115573 0.9386900658698555 1.0 20.644200402930487 6.34387219111141 0.9426475029600695 0.9757740487611752 8.865459755641893e-06 0.2502444454961632 0.024885408142863923 51.18851865656244 2.881892925066224 0.007616031436180897 95.1299707653785 2207355.0330527863 -6.34387219111141 -0.9757651833014196 GWDGPQS(ph)PPGVVGETSGPR ddPTM_BT-474_Trastuzumab_2h_R1 4 GWDGPQSPPGVVGETSGPR 19 0 A0A087WTE6 A0A087WTE6 SRCIN1 1 GWDGPQS(1)PPGVVGETSGPR;GWDGPQS(1)PPGVVGETSGPR;GWDGPQS(1)PPGVVGETSGPR;GWDGPQS(1)PPGVVGETSGPR 191.61 9.7153e-15 754710000.0 662780.0 888810.0 838040.0 906120.0 882660.0 730480.0 652760.0 596540.0 684110.0 689110.0 True False 659211.6661217805 918393.5035530085 956028.7476257395 1020834.6990934244 995061.5190642984 679983.6369649604 621183.5050146438 641056.8439687424 515520.25710434775 645130.4098232473 1.0218269920067653 1.4235780697496956 1.4819154903698806 1.5823695233543749 1.5424191820951751 1.0540250879682793 0.9628805208311843 0.9936856706915722 0.7990946469963954 1.0 19.29923129789994 2.6086515932790477 4.426746352277204 0.9515989995998358 1.4233780592852405 0.6856361782537347 0.15289051703500176 0.1373691133720827 4.32738037740274 0.05274373519871879 0.049318175333811484 406.11739640002446 -2.6086515932790477 0.4717790596854047 GWDLVDAVTPGPQPTLEQLEEGGPRPLER ddPTM_BT-474_Trastuzumab_2h_R1 4 GWDLVDAVTPGPQPTLEQLEEGGPRPLER 29 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 ;;; 221.46 1.6776999999999999e-34 631850000.0 260275.0 306256.0 294385.0 324083.0 290050.0 312612.0 317119.0 262752.0 300789.0 303471.0 False True 258873.7083192709 316449.54582433886 335831.84915971 365111.87457102176 326986.14823895914 291001.8682494933 301778.7424577773 282359.88846762106 226663.58131610352 284103.22096540534 0.9111959640569982 1.1138541293161623 1.1820768804328463 1.2851381034341764 1.1509413625365956 1.0242821861035079 1.062215139385992 0.9938637355399903 0.7978212304171795 1.0 18.116055662333416 1.8544163112922378 1.368688537323164 0.9073525329721694 1.1298848990962205 0.3896568246890212 0.10372551137824107 0.4300216671472289 1.505557803199273 0.08190951869221623 0.0345101789253611 71.5181565043034 -1.8544163112922378 0.22253236612405103 GWDQGLLGMCEGEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GWDQGLLGMCEGEKR 15 1 A0A494C1N0;P26885 A0A494C1N0 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 0 105.0 0.002164 528790000.0 209220.0 246640.0 204530.0 225000.0 225710.0 228200.0 222690.0 199950.0 315940.0 209360.0 False True 208093.5827665273 254849.26330297164 233326.0461933709 253484.9769302303 254452.8306120167 212425.07112501908 211917.63394158782 214871.2843255271 238080.8203791023 195998.46555788597 1.0617102647932168 1.3002615228520997 1.1904483309562475 1.2933008235993886 1.298238891247171 1.0838098682067574 1.0812208827165553 1.0962906455105244 1.2147075728446852 1.0 17.580482834181918 2.7252213065479305 24.456071099854036 1.0994802596109678 1.2342161213330562 0.3970417376695794 0.0820905624933369 586.0031832276906 1074366.6724119987 0.02539084837562518 0.024076269466074083 531.155039756231 -2.7252213065479305 0.1347358617220884 GWEEDEDPER ddPTM_BT-474_Trastuzumab_2h_R1 2 GWEEDEDPER 10 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 ; 169.12 1.1e-05 641590000.0 744370.0 892870.0 779560.0 856730.0 809120.0 834300.0 814920.0 748640.0 908370.0 829690.0 False True 740362.3946272822 922588.6381986866 889315.2719430111 965191.9301574935 912156.6359700279 776626.804730952 775499.2063032861 804507.3183168916 684514.3850343896 776738.4738666533 0.9531681763383129 1.1877725505291143 1.1449352669708035 1.242621503416339 1.1743420297301026 0.9998562332889919 0.9984045240385764 1.0357505716332078 0.8812675154699543 1.0 19.56706940258464 2.729515506568996 21.172915482798757 0.9907121116842954 1.149102658320383 0.49137791364252403 0.07970036802018196 70.15872590608134 164226.92677566386 0.025384161331265438 0.02434939608798448 536.4330245439006 -2.729515506568996 0.15839054663608754 GWEEGVAQMSVGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GWEEGVAQMSVGQR 14 0 P62942;Q5W0X3;Q1JUQ5 P62942 FKBP1A;FKBP12-Exip2 Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase 0 ; 184.34 3.033e-06 598390000.0 392680.0 468060.0 405450.0 380340.0 375770.0 402810.0 366370.0 361820.0 518030.0 413320.0 False True 390565.8545108496 483639.09415175533 462533.83576542366 428491.0050028616 423622.0821367138 374964.69281274715 348647.2834306867 388820.8456847318 390368.4477463641 386941.56373894477 1.0093665067584985 1.2499021544194948 1.1953583670258754 1.107379111363567 1.0947960153035305 0.9690473393179391 0.9010334275330167 1.0048567590610527 1.0088563347248252 1.0 18.561756180161346 2.952151207647843 2.2305229025554922 0.9725861392263863 1.154218947879199 0.5885398418582368 0.06505291315062746 0.20223388000919537 2.005237940701994 0.021539292246349026 0.02445185917884941 895.6765576102968 -2.952151207647843 0.18163280865281284 GWEFHSVELNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GWEFHSVELNR 11 0 Q6UXG2-2;Q6UXG2-4;Q6UXG2;Q6UXG2-3;E9PB18 Q6UXG2-2 KIAA1324 UPF0577 protein KIAA1324 0 149.96 3.4113000000000004e-05 169440000.0 203610.0 313280.0 304620.0 287330.0 304920.0 342900.0 278570.0 198670.0 284690.0 273090.0 False True 202513.78638319788 323707.3354182411 347507.8481954946 323705.9485393914 343749.7545975639 319196.1300997767 265094.50485925836 213495.7642258185 214531.9641505557 255661.16239588804 0.7921179129648479 1.2661576454736776 1.3592516162364277 1.266152220798155 1.3445521070786333 1.2485123947199521 1.0368978313912338 0.8350731187524801 0.8391261392231163 1.0 17.96387349119756 2.0358276988647783 3.2893369802406016 0.8799140410939587 1.2298567360160795 0.45987491995544316 0.15612556112359313 0.20388566928284463 4.457456947683918 0.07140293418703318 0.044871287705411114 108.5994682751301 -2.0358276988647783 0.3499426949221208 GWEFMWNER ddPTM_BT-474_Trastuzumab_2h_R1 1 GWEFMWNER 9 0 P12532;P12532-2;P17540 P12532 CKMT1A;CKMT2 Creatine kinase U-type, mitochondrial;Creatine kinase S-type, mitochondrial 0 78.098 0.071501 32035000.0 47090.0 100240.0 96721.0 110610.0 94309.0 76342.0 78655.0 70100.0 59471.0 75476.0 False True 46836.47267219083 103576.42780364033 110338.47608599729 124613.21465890114 106318.69213676263 71064.65722973795 74850.15715872115 75331.21796058743 44815.16892057223 70659.05706174535 0.6628516515761429 1.4658620155818123 1.5615616833037853 1.7635844552809132 1.5046718220971467 1.005740243145874 1.0593144073988054 1.0661226047038714 0.6342452161710923 1.0 16.108586876281258 2.7166014021294096 10.004266147890942 0.9747863110327285 1.4259254727696156 0.35591904417281817 0.2924950168662076 0.5661456269848245 252.32552707586552 0.09641534829835792 0.09215827907556938 520.7165751763407 -2.7166014021294096 0.45113916173688706 GWEWEGEWIVDPER ddPTM_BT-474_Trastuzumab_2h_R1 2 GWEWEGEWIVDPER 14 0 Q9NZM1-6;Q9NZM1-3;Q9NZM1;Q9NZM1-2;H0YD14;Q9NZM1-5 Q9NZM1-6 MYOF Myoferlin 0 ; 178.67 4.5506e-06 56534000.0 63629.0 82377.0 76612.0 69701.0 84297.0 83552.0 70672.0 69320.0 83647.0 77582.0 False True 63286.42853384652 85118.8686470519 87398.30367655859 78525.13945339547 95031.72328253597 77776.24690025234 67253.32536674259 74493.01039982763 63033.317662375004 72630.65033870809 0.8713460259369091 1.1719414358828657 1.2033253629009593 1.0811570471584495 1.3084245127829919 1.0708460758309077 0.9259634197561399 1.0256415170790094 0.8678611215571308 1.0 16.148290877633457 2.421618543896353 5.684860153975488 0.9652959056035518 1.136855681341428 0.34362204892787984 0.11169409905979219 0.21949227683805123 14.949803640886842 0.038148147341017145 0.03194290712119493 264.00888558363647 -2.421618543896353 0.17155977573787606 GWGS(ph)PGRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 GWGSPGRPK 9 1 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52;H0YCW2;S4R3B3;H7C453;S4R3U7 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 GWGS(1)PGRPK;GWGS(1)PGRPK 59.418 0.062021000000000014 891750000.0 958640.0 970390.0 812570.0 828500.0 796070.0 1108220.0 994060.0 988840.0 1335930.0 1064350.0 True False 953478.7887549178 1002688.8445368587 926972.7930149473 933388.0150519812 897444.7958234391 1031611.3598692745 945973.5201220313 1062632.2620277773 1006707.9520448642 996422.2717641204 0.9569023252228464 1.006289073368105 0.9303011577348468 0.9367394141034805 0.900667138074457 1.0353154371417788 0.9493701083650289 1.0664477221554223 1.0103226117803785 1.0 19.92639774310965 2.723506115807403 24.98349090980899 1.0152523408844514 0.9481126076873393 0.4408373506642759 0.037121870131941674 766.5673534005924 1272144.0095356107 0.012222407449408895 0.011560770875581583 529.0614474887584 -2.723506115807403 -0.06713973319711208 GWIDLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 GWIDLQR 7 0 Q13951-2;A0A494C0A9;Q13951;J3KS23;H3BSC0 Q13951-2 CBFB Core-binding factor subunit beta 0 ; 120.65 0.010504 161937000.0 398300.0 539420.0 544710.0 528970.0 454500.0 495240.0 526160.0 420050.0 707370.0 546560.0 False True 396155.5970552901 557374.2686137246 621400.4332958047 595937.5477634841 512377.88096744317 461005.2244695635 500707.63067360874 451396.2639706813 533048.141772379 511678.07286644174 0.7742282072710486 1.0893065350471067 1.214436315034361 1.164672827242757 1.0013676726404965 0.9009673248005199 0.9785598743143787 0.8821880160741318 1.0417646759538108 1.0 18.964876884754375 3.006256152409247 23.91779471813304 0.9493042169317436 1.0748572195876958 0.13165669942532154 0.11702635814042225 157.19834052433268 600971.241359057 0.0345963198251298 0.0412300273390344 1014.5095799619331 -3.006256152409247 0.12555300265595215 GWLRDPSAS(ph)PGDAGEQAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 GWLRDPSASPGDAGEQAIR 19 1 P18206;P18206-2 P18206 VCL Vinculin 1 GWLRDPS(0.102)AS(0.898)PGDAGEQAIR;GWLRDPS(0.005)AS(0.995)PGDAGEQAIR 162.91 1.6172999999999994e-11 416240000.0 142868.0 122090.0 125532.0 111452.0 135956.0 147383.0 105894.0 120000.0 151548.0 148082.0 True False 142098.814562127 126153.69184503656 143205.81445629583 125561.81177256894 153269.19072565407 137194.76011226396 100771.50266563609 128955.00934765309 114201.02603916002 138631.2799806213 1.025012642038582 0.9099944245099019 1.0329978521176029 0.9057249690699004 1.1055888017991247 0.9896378373729353 0.7269030674731022 0.9302013900880031 0.8237753128667911 1.0 17.080893290219183 2.419357165051949 24.999990613812717 0.8655080217634447 0.9940956046774739 0.3374930397171386 0.08544509073504683 84.33490793921781 36499.010166665124 0.027529794827319112 0.023033080542664175 262.63775960726053 -2.419357165051949 0.12858758291402927 GWLYYEAGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 GWLYYEAGQR 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 101.43 0.007762399999999998 249800000.0 539930.0 526090.0 533070.0 620590.0 467980.0 697180.0 830030.0 592420.0 1477200.0 855220.0 False True 537023.0768718623 543600.5876218793 608121.6224724978 699156.6303694729 527574.4790652234 648985.5875851918 789878.2778774814 636629.3886478062 1113163.8534658782 800639.127409321 0.6707429833082753 0.6789583084464562 0.7595452203794181 0.8732481419335306 0.6589416642330855 0.8105844010961041 0.9865596756847755 0.795151481926431 1.3903440580874598 1.0 19.610792596707395 1.632497420564152 1.2840052702986846 1.148349830367486 0.7450263509225513 0.5395192159965645 0.14278691663009596 0.32171428433303834 1.0131353846052278 0.11718710919023229 0.04274316979739595 42.90396410059172 -1.632497420564152 -0.40332347944493463 GWMDPQSK ddPTM_BT-474_Trastuzumab_2h_R1 3 GWMDPQSK 8 0 J3KN30;F5H8E7;Q99572-7;Q99572-5;Q99572-2;Q99572-8;Q99572 J3KN30 P2RX7 P2X purinoceptor 7 0 ;; 77.67399999999998 0.075846 304867000.0 974070.0 819680.0 650730.0 851190.0 670930.0 743330.0 654500.0 628450.0 1001620.0 859970.0 False True 968825.7153493502 846962.5532929766 742347.1277534452 958950.5667255224 756368.9585863298 691945.3467106058 622839.3345671975 675348.1302044381 754784.1720203714 805085.9783426411 1.203381677747991 1.052015034514131 0.9220718627861948 1.1911157224469722 0.9394884259981764 0.859467641127041 0.7736308311435027 0.8388521827131026 0.9375199572773313 1.0 19.618783337049067 3.0380789661615815 6.045182320856089 0.8636855341969493 1.0771309387652492 0.5278645478686171 0.09300683373391941 0.13982038371316832 13.649169459330171 0.02700310863987542 0.03206169831871467 1091.6388070569494 -3.0380789661615815 0.21344540456829997 GWQDVTATSAYKK ddPTM_BT-474_Trastuzumab_2h_R1 2 GWQDVTATSAYKK 13 1 H0YC42;P55327-2;P55327-4;P55327-3 H0YC42;P55327-2 0 ; 202.13 1.5443e-07 1167160000.0 1052750.0 1297910.0 1077640.0 1117220.0 961650.0 1378760.0 1452000.0 1182100.0 2091640.0 1635300.0 False True 1047082.1109715204 1341110.1497468383 1229362.3449852052 1258659.9374488534 1084110.4273538885 1283449.5664519311 1381761.2128213488 1270314.3045821718 1576183.348540055 1530933.7539492312 0.6839499803766451 0.8760079567697037 0.8030147234091053 0.8221517973602619 0.7081367332566108 0.838344287034704 0.9025610737609817 0.8297643848437206 1.0295568599713063 1.0 20.545980425697675 1.453740005038295 1.0331063078223488 1.0177590638361274 0.7917988180592764 0.611156827840371 0.06522279758872407 0.32156519747560364 0.6797866695138743 0.057200350935528305 0.020532041515770812 28.427587504912584 -1.453740005038295 -0.22596024577685092 GWS(ph)QEGPVK ddPTM_BT-474_Trastuzumab_2h_R1 8 GWSQEGPVK 9 0 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 GWS(1)QEGPVK;GWS(1)QEGPVK;GWS(1)QEGPVK;GWS(1)QEGPVK;GWS(1)QEGPVK;GWS(1)QEGPVK;GWS(1)QEGPVK;GWS(1)QEGPVK 191.33 3.7787e-05 15813370000.0 9797020.0 7813530.0 6747190.0 8078630.0 6582450.0 8008110.0 7155180.0 7134630.0 10512160.0 9095760.0 True False 9744273.932871247 8073598.622671375 7697135.704373198 9101383.729679396 7420685.990262154 7454528.204763247 6809056.6079580225 7667052.319517048 7921579.023727243 8515260.809528073 1.144330649504943 0.94813286442589 0.9039224841781192 1.0688320573217776 0.8714572760893999 0.8754315776707708 0.7996298363919859 0.9003896053234294 0.9302802581059484 1.0 23.021619287466446 7.999999944098326 0.7552047751895757 0.8987967740670936 43.6053699616791 0.46237210592012645 0.07085116392273227 338.5425257837872 1.4169904994590565 0.024857580796320396 24614.74754408185 99999987.12816462 -7.999999944098326 42.70657318761201 GWS(ph)QEGPVKS(ph)PAECR ddPTM_BT-474_Trastuzumab_2h_R1 1 GWSQEGPVKSPAECR 15 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 GWS(1)QEGPVKS(1)PAECR 68.88 0.029199 439610000.0 436550.0 396910.0 301920.0 365900.0 293410.0 381210.0 291200.0 259970.0 382690.0 319740.0 True False 434199.6633052647 410120.90941283794 344427.7116643156 412222.90248342755 330774.024322679 354857.8499718161 277113.54350797244 279370.2815009119 288381.17728327744 299333.9194568142 1.4505528277356086 1.3701117138915069 1.15064711773838 1.377133948706739 1.105033552237974 1.18549160955684 0.92576726356584 0.9333064625882385 0.9634096189519313 1.0 18.191396243615078 2.909000728316402 0.739870422050297 0.9267335666222766 1.3805702097452497 0.769069941895613 0.0896531035078961 0.3073855401379066 0.37257928339664326 0.057469387953728544 0.06851404562867225 810.9624178451825 -2.909000728316402 0.4538366431229731 GWSQEGPVKS(ph)PAECR ddPTM_BT-474_Trastuzumab_2h_R1 8 GWSQEGPVKSPAECR 15 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR 254.89 2.7384e-24 9591380000.0 4419930.0 4475680.0 4001690.0 3762060.0 3639270.0 4311630.0 3847230.0 3394050.0 4197910.0 3369620.0 True False 4396133.587980391 4624650.303194304 4565093.168686988 4238336.410267296 4102709.4628567407 4013577.1665852983 3661124.787054181 3647331.245636688 3163391.3296120707 3154567.9667231743 1.3935770712041118 1.4660170115143172 1.4471373629743045 1.3435552680990077 1.3005614417363318 1.272306448592523 1.1605788259040732 1.156206264728344 1.0027970115026754 1.0 21.589011004026304 2.278846359071645 0.5413428548449059 0.9854658614980352 1.4591342973068746 0.9484448005017759 0.03648270930229518 0.17595367342607854 0.10624512330243141 0.03343412818583796 0.028183709200646747 190.0405851917202 -2.278846359071645 0.47366843580883944 GWVTFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 GWVTFDR 7 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ; 134.06 0.0074714 224670000.0 403490.0 531060.0 575450.0 451020.0 363200.0 414200.0 498580.0 397380.0 624580.0 439180.0 False True 401317.65467195364 548736.011067451 656468.3580989349 508119.08575587795 409451.36714494106 385567.3289219231 474461.78063944005 427034.51345475303 470660.62794321595 411151.15639908466 0.9760830011685869 1.3346332669311995 1.5966593985734352 1.235844963215113 0.9958657801937599 0.9377751294652117 1.1539838165477585 1.0386314298487613 1.1447386699950524 1.0 18.64930936103509 3.3803825453359595 5.209723768358912 1.0502866932363601 1.322265696869782 0.3743933653583924 0.1530075833070355 0.20999266304897835 9.118054824672779 0.04345725271437766 0.0593885344396408 2400.9468455375045 -3.3803825453359595 0.27197900363342176 GYAFIEFASFEDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYAFIEFASFEDAK 14 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ; 224.82 3.321e-09 159020000.0 323010.0 346580.0 312590.0 275963.0 323330.0 440820.0 467490.0 520880.0 542300.0 541650.0 False True 321270.9500497851 358115.7057879661 356599.95491901267 310899.88750487653 364504.1589729449 410347.15097866306 444875.7227147742 559750.7105750461 408657.43144770205 507081.43327010464 0.6335687504429988 0.7062291819255199 0.7032400153548203 0.6131162908093916 0.718827657763573 0.80923323958518 0.8773259944577864 1.1038674931663026 0.805900994663365 1.0 18.951857925691044 2.3960005212988245 1.7354348602281724 0.9812440086253189 0.6719336220429138 0.741492199758296 0.07638772795988792 0.16650173215633712 1.0202115297155192 0.03496238582506406 0.02553063441946931 248.88603057464897 -2.3960005212988245 -0.30931038658240506 GYAFIEYEHER ddPTM_BT-474_Trastuzumab_2h_R1 5 GYAFIEYEHER 11 0 P08621;P08621-2;M0QYR1;P08621-3 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;;; 175.91 9.2772e-06 6674820000.0 4663450.0 6668470.0 6275820.0 6364900.0 4912240.0 5236490.0 5787650.0 4580540.0 7316370.0 5508320.0 False True 4638342.503358007 6890425.992774756 7159400.905594684 7170695.687392092 5537784.646872423 4874503.771671559 5507679.258529939 4922363.154310822 5513348.6478352 5156774.301689991 0.8994658738192048 1.336189173630618 1.3883487014834812 1.3905389819062073 1.0738854025582556 0.9452621903723951 1.0680473754154702 0.9545430663307588 1.0691467815506976 1.0 22.29803747331426 3.078040941940667 6.117959139635097 1.005840139922968 1.2679021570280335 0.4232374251673816 0.135799204428237 0.1885548858731233 11.527340589611429 0.03957884340553415 0.0474483784330254 1196.8533561103786 -3.078040941940667 0.2620620171050656 GYAFNHSADFETVR ddPTM_BT-474_Trastuzumab_2h_R1 3 GYAFNHSADFETVR 14 0 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ;; 216.15 6.2369e-12 2244480000.0 1292870.0 1564840.0 1770750.0 1608360.0 1051220.0 1256680.0 1587550.0 1167850.0 1909270.0 1396790.0 False True 1285909.331571362 1616924.7534342431 2020056.208365084 1811978.2110911326 1185086.6359309044 1169808.6695065226 1510754.1414700625 1255000.8972221392 1438755.9914072566 1307645.6663479162 0.9833775040625027 1.2365159729776822 1.54480396360494 1.385679819634742 0.9062750456250865 0.8945914781132152 1.155323785601188 0.9597407994531064 1.100264412931918 1.0 20.31854023504097 3.240165423986807 24.999992422655215 1.0034325230315795 1.3023180020203342 0.46021447536243987 0.15081636758453118 38.90679101332544 606088.753260358 0.044505537121920596 0.057210380493378586 1738.4628880435116 -3.240165423986807 0.2988854789887547 GYAFVHFETQEAADK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYAFVHFETQEAADK 15 0 B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YCC8;H0YEQ8 B1ANR0 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 ; 187.16 3.5175e-07 626130000.0 401160.0 368670.0 328730.0 320110.0 332830.0 413010.0 391370.0 355230.0 536520.0 417760.0 False True 399000.1991330657 380940.9580842784 375012.3266276185 360635.8931783822 375213.9276620334 384459.5908209637 372437.93792141223 381739.06642139016 404301.83499967074 391098.1991376698 1.0202046442883628 0.9740289239996833 0.9588699908475188 0.9221108508644279 0.9593854650554271 0.9830257251724924 0.9522875296858909 0.9760696092773744 1.0337604107897034 1.0 18.577171367446727 1.3632997448827477 5.439946332748333 1.0161245613495076 0.9656889849844603 0.38509015235096333 0.024693491300453233 0.20608651194689973 8.287776963879262 0.017738184587022216 0.006306037210921302 23.083398277234913 -1.3632997448827477 -0.05043557636504725 GYAYVEFENPDEAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYAYVEFENPDEAEK 15 0 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BV80;H3BPG5 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 0 ; 234.41 2.7533000000000003e-17 207590000.0 457200.0 396050.0 355000.0 332760.0 333580.0 450900.0 396320.0 426170.0 609920.0 445300.0 False True 454738.4859996953 409232.28483271936 404980.91428468487 374887.38188134873 376059.4357164351 419730.3443044308 377148.4875105759 457972.96944741125 459613.38850927993 416880.5727594894 1.0908123710097837 0.9816535275891051 0.9714554736958928 0.8992680551166682 0.9020795409753832 1.0068359423085553 0.9046919241500945 1.0985711481250273 1.1025061337517503 1.0 18.66927461646415 1.6985875680310172 8.496969431275659 1.0742316073777443 0.9628830144888229 0.3677986527851421 0.06071560243859738 0.1161055413002308 16.598138438393065 0.029590242767847816 0.015710423761949078 49.95598977362773 -1.6985875680310172 -0.1113485928889214 GYDDRDYYSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GYDDRDYYSR 10 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 ;;;;; 185.6 2.8436e-06 26384330000.0 14522670.0 19512590.0 18022000.0 19272800.0 18130010.0 16712700.0 17842940.0 15103170.0 19349640.0 16746750.0 False True 14444481.558340307 20162054.76254025 20559340.94996784 21712734.503915314 20438759.30851168 15557390.386464087 16979808.82554996 16230245.23774329 14581180.493892178 15677958.077385975 0.9213241601388866 1.286012799818758 1.3113532290676815 1.3849210717838283 1.3036620717842542 0.9923097325348895 1.0830370091397161 1.035226982852693 0.930043339950258 1.0 23.902234336964508 2.7353844908371525 24.978759516802167 1.0185818906788249 1.2557837309424238 0.4759357738134733 0.12171272647067788 251.15277775835926 1975190.6553425335 0.03943487034828335 0.03863045715585394 543.7314963967685 -2.7353844908371525 0.23720184026359892 GYDFESETDTETIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 GYDFESETDTETIAK 15 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 236.11 2.4801999999999998e-17 47060000.0 48279.0 47196.0 43050.0 42049.0 53935.0 52964.0 54727.0 50558.0 72546.0 57179.0 False True 48019.07122830114 48766.890329415546 49111.065802692065 47372.39908861891 60803.30255220917 49302.72334384532 52079.64593255773 54330.89468832207 54668.010366596085 53529.78726659522 0.8970532796842815 0.9110234286293919 0.9174530352251069 0.8849726761044169 1.135877903818103 0.9210334257130933 0.9729096376412757 1.0149656380612364 1.0212633593018434 1.0 15.708054298781136 GYDRYEDYDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYDRYEDYDYR 11 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 0 104.87 0.0023188 482150000.0 450530.0 877750.0 836890.0 1194800.0 905120.0 696230.0 898070.0 620310.0 914610.0 830100.0 False True 448104.39653858857 906965.3781389213 954716.8376217185 1346061.5574943973 1020381.6669334503 648101.2588491325 854626.9231394408 666600.6820703555 689216.6206461056 777122.3073156344 0.5766201694639906 1.167081898950753 1.2285284164850934 1.7321103059620235 1.3130258356089295 0.8339758783759902 1.0997328413998637 0.8577809127278215 0.8868830738199036 1.0 19.567782149352357 2.740931089823484 24.89066479732771 0.9349538685418157 1.2322122536718274 0.1913273244060889 0.2720903481890032 329.4404184680487 3459232.8103280277 0.08911757159113316 0.0904571151392973 550.7203058304881 -2.740931089823484 0.2972583851300117 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_BT-474_Trastuzumab_2h_R1 7 GYDSEDDTWEPEQHLVNCEEYIHDFNR 27 0 Q9Y232;Q9Y232-2 Q9Y232 CDYL Chromodomain Y-like protein 1 GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(0.992)EDDT(0.008)WEPEQHLVNCEEYIHDFNR;GY(0.029)DS(0.805)EDDT(0.167)WEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(0.741)EDDT(0.259)WEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR 514.6 0.0 3699330000.0 348609.5 395354.5 364002.6 390894.9 332078.7 354756.4 328351.3 268582.9 309527.8 365855.0 True False 346732.6251861563 408513.6355356576 415251.002112683 440382.15426064323 374366.95406033733 330232.9250747398 312467.69319522433 288625.9198343318 233248.82115002436 342505.8206757763 1.012340825338502 1.1927202718179957 1.2123910808095988 1.2857654605453228 1.0930236260560415 0.964167337136573 0.9122989284640897 0.8426890943484187 0.6810068824226579 1.0 18.38576898043325 2.5707824746254815 1.643874181390837 0.8379593168563593 1.1798666735933017 0.6818346026788142 0.09840247081259576 0.20425872177944468 1.1122467374181584 0.042338097659883014 0.03577581386123341 372.2052328690994 -2.5707824746254815 0.3419073567369424 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 GYDSEDDTWEPEQHLVNCEEYIHDFNRR 28 1 Q9Y232;Q9Y232-2 Q9Y232 CDYL Chromodomain Y-like protein 1 GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR;GYDS(0.997)EDDT(0.003)WEPEQHLVNCEEYIHDFNRR 187.04 3.9228e-18 419780000.0 30743.0 44559.7 36656.0 42865.3 39178.7 56192.8 34659.0 29928.2 50104.0 43952.8 True False 30577.483103868417 46042.84267759255 41816.84618033635 48292.042584921786 44167.87521465166 52308.32399962297 32982.411759762464 32161.594256320273 37756.54055920284 41147.69467411473 0.7431153396572702 1.1189653039434373 1.0162621870197401 1.1736269301935263 1.073398535797848 1.271233404784866 0.8015615946647698 0.7816135147068773 0.9175858054316417 1.0 15.328523984549014 2.2092529023321097 24.99980915193699 0.8469354178504437 1.0714572931657413 0.2979141167845275 0.14078741537744496 220.1924800280297 187825.35421641383 0.05142896794250691 0.03798863018393833 161.9022567204254 -2.2092529023321097 0.22452187531529766 GYDSEDDT(ph)WEPEQHLVNCEEYIHDFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYDSEDDTWEPEQHLVNCEEYIHDFNR 27 0 Q9Y232;Q9Y232-2 Q9Y232 CDYL Chromodomain Y-like protein 1 GYDS(0.303)EDDT(0.603)WEPEQHLVNCEEY(0.093)IHDFNR 65.69 0.093202 344680000.0 32395.0 31963.0 36278.0 30507.0 33280.0 39544.0 41375.0 33027.0 44433.0 19410.0 True False 32220.58891942285 33026.8691329585 41385.627065971246 34369.183072046835 37518.01073398575 36810.416356563306 39373.53318215098 35491.642447707825 33483.082521696044 18171.237182262943 1.7731642923506368 1.817535526155381 2.277534911402071 1.891405781968154 2.064692148237838 2.025751795947839 2.1668053081484033 1.9531769956946816 1.842641873299584 1.0 14.149369027847548 0.6606731487426218 1.9624106363138434 1.0002561774520387 2.0067146513812433 0.8094204811447887 0.14427610383660236 0.649405396157035 3.228474680995741 0.13577565851995876 0.037561659039272055 4.577972175485019 -0.6606731487426218 1.0064584739292046 GYDSGPEGGAAAS(ph)PPPDAELAACHPAAWSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYDSGPEGGAAASPPPDAELAACHPAAWSR 30 0 Q9H6K5-2;Q9H6K5 Q9H6K5-2 PRR36 Proline-rich protein 36 1 GYDSGPEGGAAAS(1)PPPDAELAACHPAAWSR;GYDSGPEGGAAAS(1)PPPDAELAACHPAAWSR;GYDSGPEGGAAAS(1)PPPDAELAACHPAAWSR;GYDSGPEGGAAAS(1)PPPDAELAACHPAAWSR 249.14 1.9575999999999996e-46 1125130000.0 478582.0 618280.0 544040.0 609985.0 594150.0 594600.0 546446.0 485585.0 471067.0 535726.0 True False 476005.36768745864 638859.0760418477 620636.1031195488 687209.0384568293 669811.4806970442 553496.701537845 520012.31935356325 521821.818450668 354978.84982440533 501535.50802189537 0.9490960461899696 1.273806272583909 1.2374719101492886 1.370210139591608 1.3355215532771458 1.103604216819841 1.0368404849430148 1.0404484031624877 0.7077840833732317 1.0 18.935992319708262 1.9797614749912935 1.3453140914315582 0.8879800828355536 1.2372663704861064 0.5121388700821252 0.13461555352343213 0.3482337666165563 1.170293053162712 0.09664942132216757 0.04466723133673232 95.44682250588666 -1.9797614749912935 0.3492862876505528 GYDVDFPR ddPTM_BT-474_Trastuzumab_2h_R1 6 GYDVDFPR 8 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9;O94808 Q06210-2 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 0 ;;;;; 151.56 0.0010960999999999998 2754400000.0 4586980.0 5256390.0 4834070.0 5188760.0 5074570.0 5166690.0 5102900.0 4781930.0 6033690.0 5243840.0 False True 4562284.209341387 5431345.76359514 5514665.037510326 5845656.483984458 5720786.410167125 4809528.881380031 4856053.232028967 5138781.898748521 4546767.946803778 4909173.641722702 0.9293385287020349 1.1063666026058918 1.1233387612614876 1.1907618085257075 1.1653257406799764 0.9797023353389258 0.9891793581627936 1.0467712641236389 0.9261778618220254 1.0 22.2270487663035 2.7256080282811013 24.677263769615816 0.995899418999774 1.1092145280812946 0.39250392284970936 0.07080591179233374 725.6013635011343 1382412.9401252833 0.023664757904478455 0.022443107956848157 531.6282225563297 -2.7256080282811013 0.11331510908152065 GYDYGPHFQGILEASLEGDSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 GYDYGPHFQGILEASLEGDSGR 22 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 292.36 2.0109999999999998e-55 8675990000.0 2995930.0 3668140.0 3473410.0 3763200.0 3673000.0 3623670.0 3637500.0 3145940.0 3856230.0 3788250.0 False True 2979800.245759116 3790231.8224625434 3962435.9365790607 4239620.734150411 4140734.7784233675 3373174.2221016493 3461540.228400589 3380706.0175596317 2905913.7873346405 3546480.6417160016 0.840213311954611 1.0687304416325816 1.1172867800180053 1.1954444877778962 1.1675616468104644 0.9511328448897168 0.9760493791179096 0.9532565828200438 0.819379571159476 1.0 21.757956642060968 2.64447976523722 7.482060212242651 0.9405657939261706 1.08586517802129 0.3209066210997097 0.10000318650977799 0.34501099097892746 24.201180258073503 0.03378453198591665 0.0318194232102852 441.0418135064844 -2.64447976523722 0.14529938409511944 GYEEEIIHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 GYEEEIIHFK 10 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494BZX8 Q92878-2 RAD50 DNA repair protein RAD50 0 87.32799999999997 0.012951 211230000.0 88027.0 113540.0 88751.0 98862.0 91298.0 104070.0 93273.0 85648.0 113270.0 107730.0 False True 87553.07241271922 117319.11026362069 101246.36936247915 111377.91906345071 102924.25913435791 96875.8858544291 88761.02865253821 92039.48867173155 85356.12624023831 100854.57916770673 0.8681120196548636 1.1632502086844843 1.003884704075964 1.1043417163859777 1.0205214278194508 0.9605501966681985 0.8800892273313771 0.9125960311497909 0.8463287135262673 1.0 16.6219170635197 2.600395312764961 2.600808568233541 0.9032026100595795 1.043122467730471 0.3375723797734822 0.0800694032031921 0.27535632734663484 3.645268045314708 0.02666561533325598 0.024422807401695747 398.46970910761456 -2.600395312764961 0.13991985767089143 GYEEWLLNEIR ddPTM_BT-474_Trastuzumab_2h_R1 7 GYEEWLLNEIR 11 0 O43707;O43707-2;F6THM6;A0A494C060;P12814-3;P12814;P12814-2;P12814-4;H9KV75;P35609-2;P35609;A0A494C1A0 O43707;P12814-3 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 ;;;;;; 275.01 9.0146e-27 2692450000.0 1984734.0 2021972.0 1868896.0 1785635.0 1631244.0 1775742.0 1726476.0 1663764.0 1909022.0 1774624.0 False True 1974048.4126686766 2089272.115712116 2132020.312064763 2011696.20791472 1838973.25425931 1652989.1351870426 1642959.7601012047 1787922.518102405 1438569.1076842272 1661365.9769879542 1.1882080408602165 1.2575628396459357 1.2832935918972543 1.2108687885627176 1.1069043664860385 0.9949578588240391 0.9889210341720613 1.0761761964957877 0.8658953702015396 1.0 20.663938484301987 3.0633625377756095 2.088354720178342 0.996122986346071 1.245481562613209 0.8278062775094834 0.05365924787928669 0.1271411423794964 1.1271449940371707 0.01763384459856459 0.02156079487035906 1157.0777376520925 -3.0633625377756095 0.24935857626713798 GYEEWLLNEIRR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYEEWLLNEIRR 12 1 O43707;O43707-2;F6THM6;A0A494C060;P12814-3;P12814;P12814-2;P12814-4;H9KV75;P35609-2;P35609;A0A494C1A0 O43707;P12814-3 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 ;;; 227.31 2.1229e-11 1253620000.0 772085.0 963818.0 829533.0 878967.0 796239.0 853696.0 858925.0 739900.0 931168.0 901775.0 False True 767928.1801467073 995898.0994897158 946324.0359699088 990244.1320774829 897635.3169716969 794682.0049042245 817375.5163378612 795115.0951360711 701694.1234119382 844222.9474515807 0.909627228760861 1.1796624369143132 1.1209409064590536 1.172965192508318 1.0632680853811778 0.9413177020396055 0.9681986480055267 0.9418307066116252 0.8311715827319216 1.0 19.68726451923188 2.8043588767824543 3.4893407956092535 0.935022639794156 1.104927176065909 0.4741242180499341 0.08064442456746242 0.20168536343902707 4.869822237585468 0.025197463606150945 0.02632003558013685 637.3219507518721 -2.8043588767824543 0.16990453627175295 GYEIDEDIVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 GYEIDEDIVSR 11 0 O14656 O14656 TOR1A Torsin-1A 0 ;; 215.06 3.0458e-11 577050000.0 490790.0 657260.0 571420.0 611560.0 621580.0 620260.0 624400.0 570100.0 642980.0 602630.0 False True 488147.64117189497 679136.5017779393 651870.9691283226 688983.4332953405 700734.5286066975 577382.8861349878 594195.3865603637 612643.7569091417 484526.19449058396 564169.6374625 0.8652497560263367 1.2037806657453822 1.155452058817419 1.2212345144879173 1.2420635250036383 1.0234207014966594 1.0532211361691004 1.0859211772981379 0.8588306819733632 1.0 19.105769499344735 2.6462760698015426 10.01903930545105 1.0196467692761937 1.1468262704053618 0.24915719435790196 0.11357204984013843 0.7260455305966144 74.9567281064084 0.03655608932810196 0.03445249503012029 442.8698038163136 -2.6462760698015426 0.1271795011291681 GYEVHGIVR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYEVHGIVR 9 0 O60547;O60547-2 O60547 GMDS GDP-mannose 4,6 dehydratase 0 120.07 0.00072403 249570000.0 180710.0 247090.0 274000.0 214430.0 175580.0 183850.0 211920.0 176350.0 283640.0 227240.0 False True 179737.07743876867 255314.2412809406 312576.8183493061 241576.81601399678 197939.07225580586 171140.88223634864 201668.61998698345 189510.1324871554 213740.7225812767 212737.34865004817 0.8448778673764297 1.200138306230991 1.4693086114535223 1.135563724691283 0.9304387476475258 0.8044703166714487 0.9479699792570382 0.8908174031956119 1.0047164916625857 1.0 17.698713812775576 3.2787687864843824 4.610910411358223 0.9166003200638457 1.1923469944788085 0.36031531092193836 0.15074852527105184 0.19891799751268352 9.382510057525208 0.04363195934057658 0.05812054579824127 1900.0664365208122 -3.2787687864843824 0.2757466744149628 GYEVIYLTEPVDEYCIQALPEFDGKR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYEVIYLTEPVDEYCIQALPEFDGKR 26 1 P14625 P14625 HSP90B1 Endoplasmin 0 178.39 3.9228e-17 238240000.0 315830.0 396930.0 356830.0 360080.0 350080.0 430970.0 429740.0 416000.0 613900.0 459930.0 False True 314129.60637201177 410141.57510074857 407068.5623780394 405666.0910801655 394660.6129132733 401178.0582942566 408951.8344337777 447044.03240519774 462612.57083854784 430576.873634116 0.7295552213957137 0.9525397210470425 0.9454027545472569 0.9421455631285982 0.9165857180909286 0.9317222611336968 0.9497765892120016 1.0382444106486655 1.0744018064278442 1.0 18.715911308597416 6.451784863472169 0.40757723823519876 1.0073373503691507 2.296638375772174e-111 0.6420798755569177 0.05210747238277103 15.518613085428713 0.6670352485748199 0.039309576238745696 10.191161457111289 2829989.7560304455 -6.451784863472169 -1.0073373503691507 GYFDEEMNR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYFDEEMNR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 Q15149-3;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 ;;; 230.59 1.9685e-07 3424350000.0 3192200.0 3919500.0 3675070.0 3634920.0 3136190.0 3677960.0 3985330.0 3058080.0 4444520.0 3840090.0 False True 3175013.5498867645 4049958.1881122207 4192487.9117189213 4095100.4993032515 3535565.206845515 3423711.282186563 3792544.3624609513 3286289.4582155948 3349227.599516764 3595012.168533548 0.8831718506204372 1.1265492293908566 1.1661957498822852 1.1391061580116142 0.9834640443756044 0.9523504015239924 1.0549461822845454 0.914124710614294 0.9316317838453819 1.0 21.777565223285908 3.1451415719113767 6.730991933402082 0.9683979544435695 1.08805923851931 0.2898312690144258 0.08080860788865821 0.25658481482641377 15.602242544831114 0.02372328688682902 0.028506403517732894 1396.8236253309062 -3.1451415719113767 0.1196612840757405 GYFEHREDR ddPTM_BT-474_Trastuzumab_2h_R1 5 GYFEHREDR 9 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0;M0R0K8;M0QYI8;M0QZV6 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;;; 168.74 3.5448000000000003e-05 1066859000.0 911626.0 1328296.0 1281806.0 1384696.0 1221607.0 1088750.0 1226413.0 1037079.0 1723051.0 1375573.0 False True 906717.9069071695 1372507.529388113 1462273.1431425186 1559998.3716239207 1377171.410418033 1013487.275141825 1167086.7178373744 1114471.1011604557 1298428.1687504982 1287782.753452706 0.7040922892282458 1.0657912025209604 1.135496759233638 1.211383183569877 1.069412839025577 0.7870017457715902 0.9062760894322195 0.8654185639405559 1.0082664682915272 1.0 20.296457803342175 2.7659554852748807 24.45587321361811 0.901324942012563 1.053955577299623 0.16025784002269738 0.13775797216728367 878.3170178532501 784087.148827181 0.04281565536742363 0.04540233239610164 583.3853048323045 -2.7659554852748807 0.15263063528706 GYFEYIEENK ddPTM_BT-474_Trastuzumab_2h_R1 4 GYFEYIEENK 10 0 Q00839;Q5RI18;A0A1W2PRI6;Q00839-2;A0A1W2PPS1;A0A1W2PP35 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;; 211.52 1.3326e-07 3350880000.0 4471750.0 3811970.0 3454630.0 3245790.0 3189990.0 4229730.0 3909640.0 3747700.0 5039150.0 3934410.0 False True 4447674.594858134 3938849.1170654744 3941011.8758177445 3656706.681201652 3596216.317947935 3937338.7208134346 3720515.7769248304 4027372.404434997 3797319.003650549 3683312.58538213 1.2075202665420004 1.069376824735833 1.0699640023652457 0.9927766369093767 0.9763538213455323 1.068966760095098 1.0101004708887178 1.0934104317994429 1.030952143111848 1.0 21.81257240648701 4.945323288208832 1.5485536333289194 1.0327471671002233 1.3514568297072886 0.6964394761457658 0.03525571197121647 1.1106569356350586 1.6822722870839304 0.009790851563027114 0.623677104757115 88170.49687328495 -4.945323288208832 0.31870966260706535 GYFEYIEENKYSR ddPTM_BT-474_Trastuzumab_2h_R1 6 GYFEYIEENKYSR 13 1 Q00839;Q5RI18;A0A1W2PRI6;Q00839-2;A0A1W2PPS1;A0A1W2PP35 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;; 236.92 9.0757e-17 18456830000.0 5327810.0 6145640.0 6124420.0 5941730.0 5313650.0 6182290.0 6972550.0 5643401.0 8291147.0 6681340.0 False True 5299125.6629353445 6350193.912282164 6986685.101587075 6693952.408780701 5990311.831028951 5754922.843845284 6635261.118772369 6064540.23922962 6247904.91752779 6254931.161017045 0.8471916838927628 1.015230023930372 1.116988328365719 1.0701880222918827 0.9576942858080844 0.9200617394020271 1.0608048191042734 0.9695614680823333 0.9988766873194312 1.0 22.576562576144394 3.2112314272155995 24.99967616396103 0.9843713581170732 1.0200724102040897 0.029784607713828515 0.0729238876220386 771.3664594118516 705614.4897094232 0.021864019033816594 0.026139613571654487 1626.4152104021866 -3.2112314272155995 0.03570105208701646 GYFSEEMNR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYFSEEMNR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 127.02 0.0031079 0.0 144380.0 208600.0 185890.0 187780.0 129800.0 163530.0 184320.0 138610.0 229940.0 168550.0 False True 143602.67412212613 215543.12489863724 212061.69621515516 211552.9287464827 146329.26061512463 152225.5560082135 175403.73742922215 148953.78204731832 173274.3680381426 157792.99469708506 0.9100700217889897 1.3659866543024612 1.3439233891355546 1.340699117553352 0.9273495372594497 0.9647168196562885 1.1116066195837426 0.9439822238830351 1.0981119179008998 1.0 17.267673632005458 3.237784383993726 24.999779915720588 1.0058810662319617 1.2565676975471365 0.4193940043186345 0.1334745373266101 18.65077453084202 600687.6750977341 0.03708778657161066 0.04688624497255042 1728.9577631718296 -3.237784383993726 0.25068663131517477 GYGFVHFETQEAAER ddPTM_BT-474_Trastuzumab_2h_R1 8 GYGFVHFETQEAAER 15 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;H0YBN4;E5RGH3 P11940-2 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 0 ;;;;;;; 252.43 1.2076e-24 10838470000.0 5532630.0 6716570.0 6168770.0 6840460.0 6372320.0 6281710.0 6374680.0 5780790.0 7058250.0 6512790.0 False True 5502842.93481298 6940126.972197699 7037279.196089957 7706461.53463184 7183797.180300252 5847470.173254787 6066312.374757571 6212181.904056837 5318838.863204397 6097138.166319961 0.9025288233109405 1.1382597511951316 1.1541938207933764 1.2639473347023094 1.178224436504145 0.9590516097463041 0.9949442196122981 1.0188684813429958 0.8723500629500545 1.0 22.539700808381717 2.7333751994617215 24.96025220329853 0.9764016972153097 1.1371035240516907 0.41621537367192274 0.09323673801193412 434.67202159040124 2092308.409275609 0.030691183057056634 0.029752328869405705 541.2216979783208 -2.7333751994617215 0.160701826836381 GYIFLEYASPAHAVDAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYIFLEYASPAHAVDAVK 18 0 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ; 176.49 7.3383e-13 890520000.0 317390.0 378630.0 357600.0 380860.0 284030.0 394140.0 381450.0 389450.0 550920.0 445200.0 False True 315681.2075053439 391232.4706633315 407946.9716850799 429076.8369495442 320199.53692229505 366894.02950576245 362997.80621949263 418512.7365870295 415153.1479497853 416786.9548451037 0.7574162382857325 0.938686938531295 0.9787901635181717 1.0294872043416232 0.7682570992206204 0.8802915380163862 0.8709433008871367 1.0041406808007394 0.9960799951238262 1.0 18.668950597363207 1.6981773757240894 6.389665976795241 0.9999877468253775 0.8949817622051127 0.2883364043197264 0.07933686485299328 0.19166690740153416 17.569247305571455 0.041593503875005294 0.021230184478754396 49.908828482334606 -1.6981773757240894 -0.10500598462026478 GYIWNYGAIPQTWEDPGHNDK ddPTM_BT-474_Trastuzumab_2h_R1 5 GYIWNYGAIPQTWEDPGHNDK 21 0 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 ;;;; 288.69 2.2293999999999997e-46 10177940000.0 4245737.0 4079873.0 3930011.0 3545009.0 3626878.0 4363052.0 4574931.0 3892488.0 5521550.0 4188780.0 False True 4222878.4237377215 4215669.106469688 4483322.388532018 3993806.775922036 4088739.4151098784 4061444.4847596623 4353624.109596407 4182965.220213563 4160837.98747937 3921448.474205019 1.0768669922645893 1.0750285600333727 1.1432822381890166 1.0184519322880268 1.0426604970090225 1.0357000765088529 1.110208163701297 1.0666888135159192 1.061046196284112 1.0 21.902955213604738 -4.999999999263334 0.26948418172262023 0.5199269401958678 1.075706258824742 0.2808586494376084 0.03406976783453966 289.41520121981046 2.8127950259490855 77.34890308235732 0.042802283041687164 1.0000000016962357e-05 4.999999999263334 0.5557793186288741 GYIWNYGTLPQTWEDPHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 GYIWNYGTLPQTWEDPHEK 19 0 Q9H2U2-2;Q9H2U2;H0Y9D8;D6RGV9;D6RGI1 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 192.69 6.9146e-15 415750000.0 407730.0 398130.0 368890.0 352230.0 389180.0 573100.0 396660.0 355100.0 479390.0 446400.0 False True 405534.8269830618 411381.51637533325 420826.50555064064 396822.28188504436 438739.76614941674 533482.9459322891 377472.04041164956 381599.365161264 361250.75799689145 417910.36981773213 0.9703870884082924 0.9843773834919521 1.0069778975194617 0.949539208749749 1.049841779089543 1.2765487158525473 0.9032368365883828 0.9131129369383564 0.8644216178565939 1.0 18.672834031850435 GYIWNYGTLPQTWEDPHEKDK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYIWNYGTLPQTWEDPHEKDK 21 1 Q9H2U2-2;Q9H2U2;H0Y9D8;D6RGV9;D6RGI1 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ; 125.88 1.3444e-05 1319440000.0 497900.0 401660.0 374260.0 355231.0 341058.0 596300.0 473480.0 346563.0 754650.0 446310.0 False True 495219.36172189075 415029.0102914022 426952.5548737638 400203.2081773452 384489.7146908566 555079.1845392141 450575.9635307515 372425.29087125557 568676.6192919213 417826.1136947848 1.1852283653185938 0.9933055802121888 1.021842677802675 0.9578223932400912 0.9202146588944895 1.328493280687311 1.0783815294510048 0.8913403893738107 1.3610365667745945 1.0 18.672543136589667 GYLGPPHQGPPMHHASGHDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYLGPPHQGPPMHHASGHDTR 21 0 Q9H0L4 Q9H0L4 CSTF2T Cleavage stimulation factor subunit 2 tau variant 0 45.257 0.054287 97528000.0 42994.0 91045.0 96709.0 115950.0 106400.0 80540.0 86509.0 29315.0 63659.0 68353.0 False True 42762.52508108245 94075.3777871353 110324.78659030312 130629.25811137861 119949.40931779098 74972.45937076698 82324.22917352739 31502.63415855375 47971.092436897095 63990.65302005248 0.668262051766875 1.4701424871794213 1.7240765859309344 2.041380294563393 1.8744832824288096 1.1716157881256999 1.286503970317818 0.4923005575311429 0.7496578042712675 1.0 15.965573568624261 2.0906144372312725 2.021154343262823 0.7113610742160043 1.5664466830880255 0.4227819761414928 0.3815627900055688 0.29696752090934536 2.3347409733869946 0.21504022766638148 0.12196238282160553 123.20105795589166 -2.0906144372312725 0.8550856088720212 GYNDDYYEESYFTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYNDDYYEESYFTTR 15 0 P50402;Q5HY57 P50402 EMD Emerin 0 178.67 1.6337e-06 188950000.0 84258.0 155310.0 148350.0 129540.0 149700.0 161210.0 138990.0 106420.0 129010.0 120830.0 False True 83804.3642899438 160479.39946312248 169236.39051868464 145939.75071796443 168763.40765858375 150065.93214752083 132266.5227066384 114361.60078981031 97217.2141454326 113118.52595223246 0.740854458493674 1.4186836162530043 1.4960979122920108 1.2901489785995945 1.4919166090428806 1.3266255980995585 1.1692737471003798 1.010989135750432 0.8594278729063828 1.0 16.78747570005691 1.8300449285749156 2.1275873821542843 0.9329168501241987 1.3164702272122677 0.35008757422765446 0.20466357938676058 0.3191062534776532 2.746215337359827 0.12784586685773852 0.05856794032039874 67.61529210558741 -1.8300449285749156 0.383553377088069 GYNFEDLTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 GYNFEDLTDR 10 0 A0A499FIZ0;Q9H7D7-2;Q9H7D7;H0Y9R3 A0A499FIZ0 WDR26 WD repeat-containing protein 26 0 ;; 188.87 2.4963e-06 651160000.0 796880.0 931220.0 886090.0 904970.0 874490.0 899860.0 914860.0 813980.0 971660.0 872750.0 False True 792589.6866216906 962215.094765622 1010843.7699676506 1019539.1092113352 985851.1179916816 837654.7962425917 870604.726695411 874723.3209066889 732207.4125769408 817050.3478011336 0.9700622351544527 1.1776692799350241 1.237186634444326 1.24782898869714 1.2065977581979235 1.0252180890650242 1.0655459960801734 1.0705868044249247 0.8961594772555642 1.0 19.640065456461365 2.7310770956928514 23.439479619127972 1.0248509302284532 1.1767066458015711 0.4496765549877805 0.08558013260792374 244.2082892378346 764893.0884059424 0.028256912136008196 0.02717137666325211 538.3653443231873 -2.7310770956928514 0.15185571557311794 GYNHGQGSYSYSNSYNS(ph)PGGGGGSDYNYESK ddPTM_BT-474_Trastuzumab_2h_R1 5 GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 31 0 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;GYNHGQGSYSYS(0.001)NS(0.031)Y(0.146)NS(0.821)PGGGGGSDYNYESK;GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK 414.9 8.178399999999996e-176 5857600000.0 1124389.0 1206092.0 1250663.0 1234904.0 1288456.0 1491645.0 1386184.0 1335682.0 1572795.0 1465564.0 True False 1118335.4145553631 1246236.0431219905 1426745.4794423287 1391242.719782442 1452533.2343229672 1388531.092104641 1319128.9841828845 1435357.373295768 1185200.746623251 1372030.4507875347 0.8150951853243835 0.9083151488413839 1.039878873405024 1.0140028007278408 1.0586741959620682 1.012026439579118 0.9614429354871205 1.0461556246597035 0.8638297684595521 1.0 20.38788107030477 4.4855437610452205 3.3001063493618013 1.004128560784963 0.8223404680546548 0.5467291329819248 0.05312159751981961 0.16868342217081866 3.602011674661446 0.012601628166302618 0.056538395821230096 30587.484412743765 -4.4855437610452205 -0.18178809273030827 GYNPGLLVHPDLAYLQAEGGGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYNPGLLVHPDLAYLQAEGGGDR 23 0 P19838;P19838-2;A0A494C1E9;A0A494C157;D6RH30 P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 0 192.45 9.1247e-18 342150000.0 206140.0 258000.0 265040.0 285730.0 273950.0 266910.0 252280.0 221740.0 272640.0 255950.0 False True 205030.16514430707 266587.37403570686 302355.328231022 321903.38870344305 308835.9086711359 248459.13993855708 240076.25259681063 238287.36477290513 205451.5251888284 239615.0518701803 0.8556647987847993 1.1125652247428086 1.2618377930399522 1.3434188970643017 1.288883591663759 1.036909568073246 1.0019247569091787 0.9944590830713153 0.8574232861637542 1.0 17.870359011012628 2.5325412739868667 4.703153072145376 0.9721415000021133 1.1834627602203402 0.36308229790183544 0.1307628747043633 0.2508202583401897 11.657183250119376 0.04725453033149881 0.043290252267789375 340.8327149345724 -2.5325412739868667 0.21132126021822695 GYNS(ph)DDNLCEPSLEFEVPNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 GYNSDDNLCEPSLEFEVPNHR 21 0 Q9P219;Q9P219-2;A0A0A0MR69 Q9P219 CCDC88C Protein Daple 1 GYNS(1)DDNLCEPSLEFEVPNHR;GYNS(1)DDNLCEPSLEFEVPNHR 224.03 2.1456e-25 214120000.0 104997.0 151284.0 119897.0 139287.0 130364.0 138931.0 112158.0 112435.0 136538.0 145591.0 True False 104431.70781826349 156319.39648689085 136777.45543659385 156920.71991858198 146965.08267203486 129327.02697839608 106732.48905483246 120825.47063336155 102890.03941546453 136299.25773327393 0.7661942519351607 1.1468836961151663 1.00350843952691 1.1512954841299465 1.0782529935682632 0.9488461575592589 0.7830746170584353 0.8864719635510175 0.7548833436555583 1.0 17.05641817988558 2.474829205292459 4.734989028264721 0.8491114688408371 1.0396653604838413 0.3206284514348072 0.11795955675618335 0.1973324384200549 11.99364006121064 0.03862861347066629 0.033648787756582296 298.4208790273785 -2.474829205292459 0.19055389164300418 GYPHLCSICDLPVHSNK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYPHLCSICDLPVHSNK 17 0 P43243;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ; 280.62 3.6238999999999986e-36 3242300000.0 2340900.0 2358500.0 2218800.0 1934920.0 1987770.0 2468800.0 2407000.0 2127220.0 2662600.0 2401000.0 False True 2328296.8544984423 2437001.2467566403 2531187.753844673 2179880.673608181 2240900.7270641457 2298137.6669300925 2290564.21436707 2285963.9582042918 2006437.9070120826 2247766.1244004816 1.0358270058542856 1.0841880835830422 1.1260903553832962 0.9697987036750068 0.9969456798633056 1.022409601240452 1.0190402771453828 1.0169936869272813 0.89263642032475 1.0 21.100060503139026 3.730690141733176 24.98148172522255 0.9939951150071173 1.0822504425618018 0.5183053344448363 0.04116822145855119 475.1803402204364 1508259.6334699567 0.010929482005934379 0.0172688167613598 5378.858774387705 -3.730690141733176 0.08825532755468446 GYPHWPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYPHWPAR 8 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;M0R0J3;H3BPQ6;P51858;O75475;O75475-3;O75475-2;Q9Y3E1 Q7Z4V5-2;P51858;O75475;Q9Y3E1 HDGFRP2;HDGFRP3;HDGF;PSIP1 Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor-related protein 3 0 ;;; 134.44 0.00087662 1268420000.0 1117666.0 1450459.0 1914263.0 1093112.0 553439.0 841275.0 1215259.0 729139.0 2080729.0 959589.0 False True 1111648.6104403657 1498736.6509940191 2183774.591327729 1231499.867120701 623916.1761600458 783119.6393983355 1156472.2794297924 783551.0546728198 1567961.2182901455 898347.2084745246 1.2374375964589976 1.6683267191746614 2.430880366440919 1.3708506638673703 0.6945156285613803 0.8717338151783697 1.2873333033377905 0.8722140473986232 1.7453844165138406 1.0 19.77691362444848 3.482417017522715 24.757290246932484 1.0609240630264307 1.7899993510339731 0.40210219697766403 0.3820962731627588 186.9421602261921 873941.7274977207 0.10353531883928649 0.14442291205010319 3036.8057812253737 -3.482417017522715 0.7290752880075424 GYS(ph)FTTTAER ddPTM_BT-474_Trastuzumab_2h_R1 1 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 1 GYS(0.949)FT(0.048)T(0.003)TAER 88.155 0.012994 212410000.0 215500.0 207300.0 177970.0 255850.0 185570.0 204300.0 178580.0 202340.0 227490.0 221400.0 True False 214339.77194430068 214199.85518450383 203026.62905702923 288240.5837671088 209201.23954043695 190177.2218704706 169941.40315815157 217439.63826170095 171428.13770982446 207270.0624499234 1.034108686082368 1.0334336404045552 0.9795270318214944 1.3906522744293954 1.009317202241786 0.9175334808248903 0.8199032757044185 1.049064373752647 0.8270762100592391 1.0 17.6611522268028 3.0039952741698657 24.999969945765205 0.9310049051540562 1.1078809258058897 0.3404212445157315 0.1222471617681674 141.71240774378228 886734.8757977956 0.035502592214866235 0.04226236158269014 1009.2419038239717 -3.0039952741698657 0.1768760206518335 GYSDRDGYGR ddPTM_BT-474_Trastuzumab_2h_R1 6 GYSDRDGYGR 10 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 ;;;;; 164.33 5.6446e-06 2019600000.0 661233.0 1114850.0 992202.0 1204840.0 1067280.0 914057.0 1029280.0 854746.0 1328090.0 1131090.0 False True 657672.9949978935 1151957.1083089442 1131895.4172256142 1357372.620464971 1203191.781735828 850870.3910487352 979489.7941685646 918531.4868322435 1000800.0149942447 1058902.8678251319 0.6210890677335498 1.0878779756966144 1.0689322426242935 1.2818669792186537 1.1362626528786812 0.8035396039641747 0.9250043832446381 0.867436962106642 0.9451291949466301 1.0 20.014138827649806 2.7421096241584957 24.99183424368305 0.8988571899672315 1.0570424409665837 0.13098695300562158 0.1646501708110788 568.1896976670741 4001157.422574843 0.051967095879089445 0.05318239901033757 552.2168116794347 -2.7421096241584957 0.1581852509993522 GYSFTTTAER ddPTM_BT-474_Trastuzumab_2h_R1 12 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;;;;;;;; 231.2 1.8478e-09 62471170000.0 5338120.0 6890730.0 6988900.0 6360650.0 5243960.0 5868650.0 6338780.0 4882240.0 7548890.0 5795050.0 False True 5309380.155040884 7120083.782515747 7972876.371392204 7165907.637827857 5911747.222613936 5462964.038816134 6032148.994908883 5246577.540312386 5688567.209443571 5425204.947608087 0.97865061436651 1.312408259462145 1.4695991116257012 1.3208547339741012 1.0896818239503303 1.0069599382092826 1.1118748606111906 0.9670745328479331 1.0485442051275127 1.0 22.371246208505784 3.13422664647077 4.420809310371932 1.0291563643055095 1.2871833349264117 0.47903333458509956 0.11971590028438814 0.18221558207300773 6.243129814342288 0.036152987307983525 0.04404376701131469 1362.1553688217823 -3.13422664647077 0.2580269706209022 GYSYDLEVEQAYDLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYSYDLEVEQAYDLAR 16 0 P28074;P28074-3 P28074 PSMB5 Proteasome subunit beta type-5 0 ;;; 326.95 4.5075e-71 1292940000.0 712340.0 886300.0 811030.0 938950.0 850600.0 825410.0 868270.0 759980.0 872760.0 864100.0 False True 708504.8405884147 915799.9597203353 925215.9744008683 1057820.973727289 958918.8680988073 768351.3495061425 826268.4629864953 816693.5667002446 657679.9923848361 808952.3982067714 0.8758300762306636 1.1320813953335402 1.1437211589357072 1.3076430406439141 1.1853835531292953 0.9498103364417605 1.0214055423015111 1.0095693745523633 0.8130020923885444 1.0 19.625695286002408 2.733069035383099 24.779023939875547 0.9687440927322782 1.139856849422091 0.3541341173781196 0.11403567092336285 478.07875652733213 2157172.6315553957 0.03771903274941465 0.03648312674775429 540.8402880007205 -2.733069035383099 0.17111275668981285 GYT(ph)SDDDTWEPEIHLEDCK ddPTM_BT-474_Trastuzumab_2h_R1 3 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 GYT(0.472)S(0.472)DDDT(0.055)WEPEIHLEDCK;GYT(0.489)S(0.489)DDDT(0.021)WEPEIHLEDCK;GYT(0.5)S(0.5)DDDTWEPEIHLEDCK 163.91 9.1183e-11 107231000.0 234158.0 248311.0 241561.0 221058.0 232860.0 300053.0 254095.0 258372.0 382640.0 291427.0 True False 232897.3193453992 256575.88152783096 275570.6891141489 249043.92013441242 262513.3407306464 279311.0423587874 241803.45411283776 277653.03062643175 288343.4991133113 272827.8793567926 0.8536419367935125 0.9404313156438533 1.01005326055322 0.9128243078440068 0.9621939713402335 1.023762831779799 0.8862857222762691 1.0176856972279178 1.056869627081725 1.0 18.057631550450925 5.822509862371364 0.9955603148766519 0.9823205220403803 3.76964805924476e-17 0.3860472368865667 0.04945390455437971 14.968989164669498 2.2476390577460283 0.0146749945883356 25.929356013711974 664522.7633501657 -5.822509862371364 -0.9823205220403803 GYT(ph)SDSEVYTDHGRPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 GYTSDSEVYTDHGRPGK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 GYT(0.499)S(0.499)DS(0.001)EVYTDHGRPGK;GYT(0.5)S(0.5)DSEVYTDHGRPGK;GYT(0.499)S(0.499)DS(0.002)EVYTDHGRPGK 173.09 2.229e-09 13091800000.0 4800492.0 4526400.0 4282768.0 4058010.0 4088919.0 4624140.0 4529520.0 4312538.0 5956830.0 5156898.0 True False 4774646.684456803 4677058.487733424 4885744.5079132095 4571753.649922863 4609618.597728316 4304484.085854712 4310409.813153271 4634361.484184245 4488849.063932538 4827780.354597502 0.9889941823699373 0.968780297405091 1.01200637747749 0.9469680296389571 0.9548111676908766 0.8916072749157996 0.8928346976366605 0.9599362737724667 0.9297956274373171 1.0 22.20292860984518 3.4831593710694198 2.6876419572832697 0.9324180439455088 0.9876124804533796 0.33153914753225167 0.03190268813769701 0.29342426687900003 4.2600505026339395 0.009055494445721207 0.01409744541178936 3042.0011301875447 -3.4831593710694198 0.055194436507870814 GYTS(ph)DDDTWEPEIHLEDCK ddPTM_BT-474_Trastuzumab_2h_R1 2 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 GYT(0.108)S(0.859)DDDT(0.033)WEPEIHLEDCK;GYT(0.447)S(0.553)DDDTWEPEIHLEDCK 330.15 1.9552999999999997e-75 686670000.0 661910.0 690260.0 605510.0 601060.0 587910.0 855870.0 743960.0 770420.0 1136840.0 795450.0 True False 658346.3501051137 713234.886829018 690760.5448127302 677154.1343719299 662776.8536844213 796705.7214012707 707971.8125968112 827912.6525134908 856681.0148755411 744683.6999809925 0.8840617165676079 0.9577688981875431 0.927589182938154 0.9093177873897519 0.8900112271845593 1.0698578757955977 0.9507013683996061 1.1117641658258703 1.150395818919371 1.0 19.50626825388315 2.32962586613871 1.2114609719089748 1.0886234329496964 0.917071443690402 0.5781943611309881 0.058453246372410506 0.3143458577848716 0.9084852690539394 0.03465397631101581 0.021528386538468346 213.6121081605496 -2.32962586613871 -0.17155198925929438 GYTS(ph)DSEVYTDHGRPGK ddPTM_BT-474_Trastuzumab_2h_R1 5 GYTSDSEVYTDHGRPGK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 GYT(0.134)S(0.846)DS(0.02)EVYTDHGRPGK;GYT(0.015)S(0.985)DS(0.001)EVYTDHGRPGK;GYT(0.147)S(0.853)DSEVYTDHGRPGK;GYT(0.136)S(0.861)DS(0.004)EVYTDHGRPGK;GYT(0.087)S(0.901)DS(0.012)EVYTDHGRPGK 232.54 6.7123e-17 8728160000.0 2218647.0 2120642.0 2103682.0 2100871.0 1867559.0 2252879.0 2264665.0 2056038.0 2809600.0 2345119.0 True False 2206702.051066853 2191226.2870148392 2399862.140068268 2366841.0531928446 2105381.568760569 2097142.7774367277 2155114.5020895693 2209469.9959094175 2117211.7267111638 2195451.497662612 1.0051244827846204 0.9980754707392666 1.093106426000885 1.078065744432388 0.9589743025532855 0.9552216387697252 0.9816270158479988 1.0063852461608604 0.9643627877752043 1.0 21.066086231843943 3.2309598664875083 24.999997567104586 0.9792426446925262 1.0438784496308213 0.520364949887615 0.030942613842054826 153.43395976830772 504667.1347412823 0.00973747515331453 0.011849473558222039 1702.0012177862852 -3.2309598664875083 0.06463580493829513 GYWAGLDASAQTTSHELTIPNDLIGCIIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 GYWAGLDASAQTTSHELTIPNDLIGCIIGR 30 0 F8VZX2;Q15366-2;Q15366-3;Q15366-5;Q15366-4;F8VRH0 F8VZX2;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 ; 240.34 1.3904e-45 735925000.0 195402.0 243785.0 251945.0 275568.0 240637.0 290253.0 246726.0 238755.0 270446.0 267171.0 False True 194349.97734320324 251899.2363538555 287416.66605480283 310454.88054537645 271280.69558275654 270188.49329206883 234790.92079515124 256572.1104733242 203798.2070907347 250119.9180433988 0.7770271910511389 1.0071138609206962 1.1491154655061602 1.241224141499634 1.084602528678608 1.0802358141073272 0.9387134084795766 1.0257963959064063 0.8148019905210959 1.0 17.9322604240718 2.2399014651056044 24.99805469698225 0.9551273516860185 1.0681824188261448 0.15859927818338515 0.12344129594068606 70.5433269768614 1315204.0228958854 0.046560770834758194 0.036988929794482824 173.74065925697067 -2.2399014651056044 0.11305506714012636 GYWASLDASTQTTHELTIPNNLIGCIIGR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYWASLDASTQTTHELTIPNNLIGCIIGR 29 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 ;;; 325.46 3.0720999999999987e-93 1209193000.0 838315.0 1056841.0 1011586.0 1079315.0 1092338.0 1106535.0 1034871.0 982740.0 1103310.0 1134166.0 False True 833801.6051855531 1092017.3138111243 1154008.5159368666 1215956.168335339 1231440.7695054235 1030042.8399532111 984810.3361388705 1056077.049052606 831414.0340965599 1061782.5548716343 0.7852847095292093 1.02847547155561 1.0868595557933065 1.145202624356871 1.1597862140938078 0.9701071422083588 0.9275066082225568 0.9946264837439168 0.7830360654183801 1.0 20.018056912557963 2.493464590887283 22.131871574389738 0.935214976879459 1.050362863053532 0.18910712862706003 0.11135089153431618 274.37765198822996 371559.39763306634 0.03761630527077451 0.03449490473954731 311.5046908073001 -2.493464590887283 0.11514788617407301 GYWGNK ddPTM_BT-474_Trastuzumab_2h_R1 3 GYWGNK 6 0 P15880;H0YEN5;E9PPT0;E9PMM9;I3L404;E9PM36 P15880 RPS2 40S ribosomal protein S2 0 ;; 107.73 0.072163 4034570000.0 3989770.0 4805230.0 4318030.0 4216730.0 3838590.0 4442610.0 4575990.0 4371880.0 5234730.0 4654100.0 False True 3968289.521625115 4965169.175727122 4925971.091010411 4750567.585648933 4327411.683394537 4135502.827479056 4354631.881720632 4698131.885556818 3944700.933288274 4357071.353424528 0.9107699185385518 1.1395657249965963 1.1305692956207258 1.0903120927581618 0.9931927509044168 0.9491473726333801 0.9994401120601392 1.0782774722897817 0.9053560553209341 1.0 22.054927309014897 3.234313757808145 24.639586653886724 0.9963746477904133 1.0774132997790271 0.21980023538645965 0.07202806351908865 137.17831460761178 795886.6482267441 0.02069637505499687 0.025589648527959367 1715.1960103089752 -3.234313757808145 0.08103865198861382 GYYS(ph)PYSVSGSGST(ph)AGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 2 GYYS(0.995)PY(0.004)S(0.005)VS(0.06)GS(0.092)GS(0.228)T(0.566)AGS(0.049)R 137.99 1.5793e-05 108080000.0 345420.0 258130.0 199370.0 240790.0 207650.0 232850.0 186420.0 190620.0 278840.0 224860.0 True False 343560.29709976976 266721.70100712 227439.5630448949 271273.9893112448 234092.9966620235 216753.62756994137 177402.15240644309 204845.03234874722 210123.61826457203 210509.24228766837 1.6320437685594933 1.2670308348867425 1.0804255460389272 1.288655958110092 1.112031918969748 1.0296632357535154 0.8427285684873481 0.9730928206411916 0.9981681373278168 1.0 17.68352404981815 7.9999999999999805 0.4105787184791628 0.9525058508688987 12.184751274635849 0.8089164137241411 0.09269749988735576 32.23785344926713 0.420836163013416 0.06631004843770416 295.2526352174793 99999999.9999955 -7.9999999999999805 11.23224542376695 GYYS(ph)PYSVSGSGSTAGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 GYYS(0.911)PYS(0.089)VSGSGSTAGSR;GYYS(0.504)PYS(0.493)VS(0.003)GSGSTAGSR 292.44 3.4439e-49 3478860000.0 912540.0 1077560.0 933630.0 885610.0 887130.0 871530.0 877530.0 820540.0 964910.0 846360.0 True False 907626.9860327262 1113425.9332012255 1065076.9887425634 997728.1351963611 1000100.7470685333 811283.1824609457 835080.5214098593 881772.861417694 727120.8596315733 792344.5801947486 1.1454952917197245 1.4052294431389423 1.3442093444758347 1.2592098944516434 1.2622043137125023 1.023901977421922 1.0539360554528014 1.112865391470167 0.9176826317823187 1.0 19.59576845022922 2.7934210881036563 4.00748380462415 1.0372126455423276 1.2966208468662954 0.7366988783686489 0.07787299772095524 0.12043543937711144 4.016099206885052 0.024602758519802145 0.02564965518938552 621.4713153120247 -2.7934210881036563 0.2594082013239678 GYYSPYS(ph)VSGSGSTAGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 GYYS(0.071)PYS(0.929)VSGSGSTAGSR;GYYS(0.235)PYS(0.71)VS(0.055)GS(0.001)GSTAGSR;GYYS(0.002)PYS(0.991)VS(0.007)GSGSTAGSR;GYYS(0.279)PYS(0.721)VSGSGSTAGSR 436.14 1.8243999999999993e-169 6333060000.0 1776040.0 2109690.0 1778920.0 1695270.0 1816430.0 1681800.0 1705990.0 1593520.0 1754670.0 1706110.0 True False 1766477.9979765944 2179909.756315464 2029376.4733501726 1909891.0081800502 2047741.5936758933 1565541.1245313608 1623464.746185322 1712436.5541306 1322255.0898733926 1597224.5991257427 1.1059671876726005 1.3648110337823873 1.270564249048614 1.1957560691373328 1.2820623942285547 0.9801634193389432 1.0164285893630378 1.0721325949199128 0.8278454330074446 1.0 20.6071357657688 2.735993674699099 24.848957935570585 0.9941491282524253 1.249367458034526 0.7047797451439811 0.08529235313857318 118.30562719810393 1145236.6077332795 0.026317429100041242 0.02588471345165042 544.4947224675647 -2.735993674699099 0.2552183297821007 GYYSPYSVS(ph)GSGSTAGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 GYYSPYS(0.217)VS(0.682)GS(0.101)GSTAGSR;GYYSPYS(0.035)VS(0.849)GS(0.117)GSTAGSR;GYYSPYSVS(1)GSGSTAGSR;GYYSPYSVS(0.997)GS(0.003)GSTAGSR 404.84 3.816699999999999e-147 2352260000.0 1616270.0 1567380.0 1432400.0 1629490.0 1582660.0 1556130.0 1372680.0 1259130.0 1749170.0 1474430.0 True False 1607568.1819044782 1619549.2957987816 1634069.4693560079 1835783.2669246278 1784202.3698392413 1448558.3958360003 1306278.2242531732 1353092.674332589 1318110.4911771666 1380330.6150769691 1.1646254631647346 1.1733053502609396 1.18382469497345 1.3299591031835964 1.2925905941307776 1.0494285789315965 0.9463517000818918 0.9802670893140616 0.9549237528892068 1.0 20.396582430244276 2.566769534298351 4.183170315662796 0.9712557993995387 1.2279019264051831 0.8540606010471257 0.05090061740899261 0.09042320447460767 2.830947520550438 0.019126383794172794 0.017660526548734783 368.7818463199958 -2.566769534298351 0.2566461270056445 GYYSPYSVSGSGSTAGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 GYYSPYSVSGSGS(0.009)T(0.365)AGS(0.626)R;GYYSPYSVSGSGS(0.004)T(0.004)AGS(0.991)R;GYYSPYSVSGSGS(0.001)TAGS(0.999)R;GYYSPYSVSGSGST(0.001)AGS(0.999)R 366.05 1.8614999999999994e-107 7164230000.0 2243150.0 1665350.0 1628540.0 1829310.0 1748510.0 1912130.0 1490810.0 1517850.0 2697210.0 1943230.0 True False 2231073.1296373927 1720780.1680246673 1857824.276476566 2060900.4584366188 1971172.384269276 1779948.953769859 1418693.8248527506 1631119.6744861274 2032518.7362623208 1819211.397717094 1.226395751718101 0.9458934625102136 1.0212250642272398 1.1328537524681395 1.0835312414724732 0.9784178771106508 0.7798400046487461 0.8966080998244621 1.117252639694817 1.0 20.794881767463377 2.594029953001654 4.485383705699388 0.9244534960933803 1.0730994838286998 0.2556020790878456 0.10543001984830572 0.2903959891763856 9.392502346959187 0.03532581326964404 0.032946059900628266 392.6720167936064 -2.594029953001654 0.14864598773531945 HAAENPGK ddPTM_BT-474_Trastuzumab_2h_R1 9 HAAENPGK 8 0 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;;;;; 134.81 0.0020022 1417971000.0 2873721.0 2693683.0 2437306.0 2184489.0 2242381.0 1761223.0 2759854.0 2500112.0 3636559.0 2914075.0 False True 2858249.2054364197 2783340.6102892375 2780457.499356474 2461045.083419294 2527934.9287165203 1639473.7994829952 2626349.3183538904 2686683.052751496 2740377.761844043 2728096.2386348746 1.0477083487592334 1.0202501549879366 1.0191933334242638 0.9021108011390347 0.9266296741721568 0.6009589310908546 0.962704057562171 0.984819748916152 1.0045018658195557 1.0 21.37946310831686 3.7664875803053395 4.95759439366382 0.9066155282463162 1.0300578772032425 0.19114140978119432 0.11040105821731551 0.34072188495198386 23.032130061618027 0.030759239634698083 0.054783158375683365 5841.005030960481 -3.7664875803053395 0.1234423489569263 HAAS(ph)DVDLEIESLLNQQSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 HAASDVDLEIESLLNQQSTK 20 0 Q86U44;F5H6D8;B4DTN4;H0YFV6 Q86U44 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 HAAS(1)DVDLEIESLLNQQSTK;HAAS(1)DVDLEIESLLNQQSTK 239.1 7.627899999999998e-30 46955000.0 94969.0 87024.0 73488.0 73722.0 70327.0 89472.0 83414.0 71565.0 117432.0 84412.0 True False 94457.6974560478 89920.54123288114 83834.4716308533 83055.19764111297 79282.72658921315 83287.0112344334 79378.94614757573 76905.54369970666 88492.45710818114 79024.75389125089 1.1952925229736848 1.137878155958883 1.0608634320610635 1.0510022942356585 1.0032644543039928 1.0539357243560414 1.004482041877818 0.9731829574001514 1.119806804206681 1.0 16.270017016665307 4.458242569660712 1.1143846756818547 1.0206095517696563 1.239397870714327 0.6776063298735368 0.0383011787073196 0.5852043352551144 0.8430983643437013 0.011404258066364205 0.13471491570342745 28723.8446788947 -4.458242569660712 0.21878831894467066 HAASNPSKK ddPTM_BT-474_Trastuzumab_2h_R1 2 HAASNPSKK 9 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ; 118.18 0.0006697 137375000.0 439010.0 357410.0 304730.0 267060.0 324440.0 262070.0 321520.0 358360.0 595960.0 400300.0 False True 436646.4189385963 369306.17579109233 347633.3352393575 300869.76861772145 365755.5108934593 243953.71774642306 305966.849274325 385102.64291520824 449093.6434548647 374752.51128592767 1.165159420654142 0.9854668472370025 0.9276344381162028 0.8028492393161434 0.9759921544979219 0.6509728698263263 0.8164504307774452 1.0276185784419831 1.1983739399473068 1.0 18.515578620408785 -0.6958370869990093 6.4437786108834745 1.0000100169637922 0.9385608720082965 0.004262093627783292 0.1570150095304977 2.3180007639019674e-09 0.0 0.15555839569861568 0.036665464943311285 0.20144797819115728 0.6958370869990093 -0.061449144955495694 HAASYS(ph)SDSENQGSYSGVIPPPPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAASYSSDSENQGSYSGVIPPPPGR 25 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 HAAS(0.145)Y(0.001)S(0.438)S(0.345)DS(0.071)ENQGSYSGVIPPPPGR 187.75 8.4841e-18 459070000.0 261000.0 255630.0 304180.0 276970.0 299030.0 353600.0 318100.0 261550.0 316910.0 316000.0 True False 259594.8049998258 264138.49001840194 347005.9000200434 312034.3736016259 337109.69801032904 329156.4642848672 302712.28773999366 281068.1891239891 238811.7768764366 295832.6094587887 0.8775057133652095 0.8928646862211383 1.172980560374577 1.054766660688548 1.1395285280654313 1.1126442919428081 1.0232553074314255 0.9500919781568016 0.807253052032807 1.0 18.174421563085712 1.642705837826269 3.3107294683574517 0.8980662105553623 1.04656534774711 0.2350367901555791 0.10035270478061022 0.27649798725054076 7.164390534860874 0.06466536663918043 0.028078565968679955 43.92440000089256 -1.642705837826269 0.14849913719174768 HAASYSSDS(ph)ENQGSYSGVIPPPPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAASYSSDSENQGSYSGVIPPPPGR 25 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 HAAS(0.057)Y(0.001)S(0.288)S(0.288)DS(0.367)ENQGSYSGVIPPPPGR 174.15 2.2711e-12 446280000.0 321540.0 346290.0 329840.0 360630.0 393450.0 377630.0 380970.0 305590.0 429110.0 349080.0 True False 319808.8643664524 357816.0533132748 376278.60497932474 406285.721023773 443553.5253391437 351525.3269454024 362541.02565327025 328394.6775545774 323361.59027940914 326801.415537576 0.9786030572737234 1.0949036212853633 1.1513983327164008 1.2432189755220255 1.357257050461409 1.0756542359743348 1.1093618583533487 1.004875321651776 0.98947426450859 1.0 18.318054706955348 1.936497146875885 1.8412326041870857 0.99309016219683 1.1626618016829844 0.3428108970094521 0.09455389797087896 0.4164272492053157 2.6214707393099927 0.06458983511815079 0.03096312086824213 86.39669847818905 -1.936497146875885 0.1695716394861544 HADGEKEDQFNGS(ph)PPRPQPR ddPTM_BT-474_Trastuzumab_2h_R1 7 HADGEKEDQFNGSPPRPQPR 20 2 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR 270.71 1.1512999999999998e-44 11655210000.0 3054310.0 2600350.0 2539810.0 2439860.0 2316030.0 3103400.0 3049270.0 2534060.0 3879180.0 2797260.0 True False 3037865.934325739 2686901.0778052337 2897393.171575735 2748746.025835516 2610962.6923146965 2888869.262617806 2901765.1607574015 2723164.4248959464 2923208.067348882 2618736.4719452267 1.160050263503291 1.0260295782299063 1.1064088359465658 1.0496459094999036 0.9970314769302634 1.10315386583054 1.1080783392465368 1.0398772286060345 1.1162666036332745 1.0 21.320439455378953 4.75304939444304 24.507763633959655 1.063456653185446 1.1600503517728207 0.3192901701212809 0.04334432880667011 2436.684553943649 4121555.4473900655 0.009776596428146218 0.2158306338481895 56630.369387429244 -4.75304939444304 0.09659369858737477 HADHSSLTLGSGSSTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HADHSSLTLGSGSSTTR 17 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 121.79 3.4164e-05 118260000.0 33676.0 47748.0 57540.0 75870.0 55355.0 54318.0 54529.0 30001.0 50128.0 51547.0 False True 33494.69215775533 49337.26331572448 65641.13185335431 85475.13422087362 62404.13113520979 50563.124510818445 51891.22394899119 32239.826961991188 37774.626080786344 48257.226328393 0.6940865587637002 1.0223808343227554 1.3602342456788317 1.771240096544521 1.2931561940702176 1.0477834794468643 1.0753047345876996 0.6680828844699329 0.7827765695385805 1.0 15.558457375971974 2.1273072015598875 2.019411185205447 0.7923122333753145 1.241884768753325 0.27291498372878953 0.27216593472202655 0.41699113624180145 3.31906634259818 0.15518881001620488 0.09123553460565151 134.06246533256015 -2.1273072015598875 0.44957253537801045 HADIVTTTTHK ddPTM_BT-474_Trastuzumab_2h_R1 1 HADIVTTTTHK 11 0 P34897-3;P34897-2;P34897;H0YIZ0;G3V2Y4 P34897-3 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase 0 124.12 0.00020568 302400000.0 227540.0 233820.0 240950.0 199670.0 262190.0 419010.0 251730.0 185530.0 364820.0 303760.0 False True 226314.9499220708 241602.55735282498 274873.6656250555 224948.20152737378 295578.3423781171 390044.82494344533 239552.85819801484 199375.19070225087 274914.9993375452 284373.77673797996 0.795836214288478 0.8495950650732325 0.9665928721631819 0.7910300454132221 1.0394008398687933 1.3715920976174605 0.8423873007768125 0.7011025875496031 0.9667382221070615 1.0 18.117428908752974 4.558835981412979 1.2984238142282063 0.946069663563696 0.7534764223012703 0.09192689890751837 0.17002487630009094 3.2528768686272627 6.120623484685634 0.054349098131105486 0.7640028357016249 36210.62171100286 -4.558835981412979 -0.19259324126242572 HADNS(ph)SDTEMEDMIAEETLEEMDSELLK ddPTM_BT-474_Trastuzumab_2h_R1 7 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 HADNS(0.487)S(0.487)DT(0.025)EMEDMIAEETLEEMDSELLK;HADNS(0.416)S(0.416)DT(0.167)EMEDMIAEETLEEMDSELLK;HADNS(0.459)S(0.459)DT(0.082)EMEDMIAEETLEEMDSELLK;HADNS(0.484)S(0.484)DT(0.033)EMEDMIAEETLEEMDSELLK;HADNS(0.471)S(0.471)DT(0.058)EMEDMIAEETLEEMDSELLK;HADNS(0.601)S(0.374)DT(0.026)EMEDMIAEETLEEMDSELLK;HADNS(0.483)S(0.483)DT(0.034)EMEDMIAEETLEEMDSELLK 249.14 4.0487e-46 1128316000.0 513081.4 444215.4 379288.8 393013.2 401456.7 490008.4 456076.8 337677.7 621939.0 376540.9 True False 510319.02675110253 459000.84105512046 432689.3662026502 442768.6308234483 452579.8311247147 456135.27266370127 434014.6228014316 362876.92466661654 468670.467005629 352509.7373891168 1.447673560823622 1.302094076761499 1.2274536567624723 1.2560465254175364 1.2838789489242841 1.293965029284277 1.2312131460991271 1.0294096479555002 1.329524881998617 1.0 18.427303584115514 7.999999883383448 0.047626787847363274 0.5008974405832509 2.5523468407867367 0.5385303509405095 0.08653651794891262 409.69279856523815 1.4754293480782839 15.50091992210085 62.91524394995133 99999973.14805019 -7.999999883383448 2.0514494002034858 HADNSSDT(ph)EMEDMIAEETLEEMDSELLK ddPTM_BT-474_Trastuzumab_2h_R1 5 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 HADNS(0.314)S(0.314)DT(0.365)EMEDMIAEET(0.007)LEEMDSELLK;HADNS(0.082)S(0.082)DT(0.837)EMEDMIAEETLEEMDSELLK;HADNS(0.303)S(0.303)DT(0.391)EMEDMIAEET(0.003)LEEMDSELLK;HADNS(0.305)S(0.305)DT(0.389)EMEDMIAEETLEEMDSELLK;HADNS(0.249)S(0.249)DT(0.503)EMEDMIAEETLEEMDSELLK 209.54 4.2537e-25 206840000.0 116035.8 95907.90000000001 93424.90000000001 81217.50000000001 83695.8 107910.4 102425.5 76606.8 124149.4 98507.7 True False 115411.07614558928 99100.13647395012 106578.31385621204 91499.62717258203 94353.9640261275 100450.80804175821 97470.787261593 82323.58841744829 93554.44388672948 92220.85424931489 1.2514639675054482 1.0745957330436064 1.1556856062955394 0.9921793494258571 1.0231304491177868 1.0892417865724169 1.0569278289060862 0.8926786580710933 1.0144608250299796 1.0 16.492805409163335 7.999999999999289 0.3554492297382329 0.9778430177060824 4.045412776095994 0.6094216333870306 0.058049118217609906 42.0329316264283 0.5907863642715848 0.048854994538381435 86.83878880577629 99999999.99983619 -7.999999999999289 3.067569758389912 HADPLHDLSFDNSDLVMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HADPLHDLSFDNSDLVMLK 19 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 0 49.224 0.08873500000000001 24446000.0 24483.0 24699.0 20956.0 22464.0 21791.0 24202.0 21952.0 16283.0 28461.0 23046.0 False True 24351.186248317015 25521.0912841392 23906.4226471827 25307.940096714192 24565.954684623914 22528.97270537995 20890.097895216408 17498.120143398635 21447.16790786107 21575.184549326746 1.1286664173204903 1.1828909841207167 1.1080518265105037 1.17301152344043 1.1386208367515676 1.0442076476274205 0.9682465448884553 0.8110299174217105 0.9940664868394059 1.0 14.397085279498745 2.397681738265731 2.143370751043923 0.9111650970835635 1.1478417331086133 0.7489920730041899 0.05474937207770758 0.13387757812634987 1.2582518019318665 0.02274099462317899 0.017581908444200118 249.85137180132068 -2.397681738265731 0.23667663602504974 HAEATLGSGNLR ddPTM_BT-474_Trastuzumab_2h_R1 5 HAEATLGSGNLR 12 0 Q9H8S9;Q7L9L4;Q7L9L4-2;D6RCK3;Q9H8S9-2 Q9H8S9 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B 0 ;;;; 178.1 2.2428000000000006e-05 1664070000.0 905885.0 1043870.0 954417.0 955233.0 953466.0 1043233.0 1113770.0 939990.0 1141784.0 1090912.0 False True 901007.8158132859 1078614.5819172596 1088790.61765872 1076165.3998577532 1074884.2434642566 971116.7582163317 1059892.690085422 1010136.8269725037 860406.6323217469 1021289.0621832488 0.8822260505631646 1.0561305529028813 1.0660944662730163 1.053732424742896 1.0524779744203225 0.9508735520385758 1.037798924253285 0.9890802363173218 0.8424712103372797 1.0 19.961959828836203 1.4337965421548 7.363173432596056 0.9185301909440781 1.0174434275623145 0.24121644947707643 0.06479465709220113 0.24457992064224623 28.224100182341015 0.03884141539617306 0.015448962214535194 27.151669721284414 -1.4337965421548 0.09891323661823648 HAEELER ddPTM_BT-474_Trastuzumab_2h_R1 4 HAEELER 7 0 Q9UHB9;Q9UHB9-4;Q9UHB9-2 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 ;;; 151.27 0.0018927 515430000.0 280627.0 353850.0 322258.0 333128.0 317404.0 313960.0 320362.0 262649.0 403163.0 335580.0 False True 279116.13541259064 365627.68334315805 367629.1252832503 375301.97064361675 357823.5179990989 292256.68418234395 304864.86615831434 282249.20208459784 303808.88075742224 314162.9970955076 0.888443699586102 1.1638152383426772 1.1701859502298058 1.1946090854535694 1.1389741035934866 0.9302708685755757 0.9704034815584389 0.8984164420827454 0.967042215557494 1.0 18.261153740840623 2.7380205708371586 24.990757676624867 0.9444469590535327 1.1220385879248351 0.4646269023161027 0.08412699802916389 39.79237020256761 1841370.0690112396 0.02646889242201711 0.026373759444492502 547.041873522046 -2.7380205708371586 0.17759162887130242 HAEMVHTGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HAEMVHTGLK 10 0 Q01518-2;Q01518;Q5T0R1;Q5T0R9;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R5;Q5T0R7;Q5T0R6 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 ; 156.48 6.284e-06 986990000.0 733500.0 680310.0 537710.0 531190.0 510490.0 655110.0 594520.0 398700.0 907730.0 617010.0 False True 729550.9174995109 702953.7070939214 613414.8941408952 598438.5995358628 575497.8755887134 609823.7876630642 565760.796313049 428453.01855757704 684032.104458829 577631.8935511617 1.263003178398586 1.2169579189478388 1.0619477577142546 1.0360207014484357 0.9963055745600735 1.055730811389228 0.9794486811226235 0.7417405848619892 1.1842007203818694 1.0 19.139790876284117 4.5302094010645035 0.646038652839613 0.9500330334730596 1.437716336867457 0.43154811478880184 0.10579224170090307 2.2609925401685014 0.855372675953427 0.04989706474704616 0.7841207053475335 33900.75739087257 -4.5302094010645035 0.48768330339439747 HAEQQALR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAEQQALR 8 0 K7EQA8;Q86X55-2;Q86X55-1;Q86X55;K7EK20;K7EPK1 K7EQA8 CARM1 Histone-arginine methyltransferase CARM1 0 99.136 0.0070277 22852000.0 27482.0 38315.0 37268.0 32847.0 19133.0 18891.0 27817.0 16415.0 44116.0 23658.0 False True 27334.039965537235 39590.29161309339 42515.010460737016 37005.426832121215 21569.47413982421 17585.10963463072 26471.38543874064 17639.970653681055 33244.202924113655 22148.126185367168 1.234146840990833 1.7875233002442399 1.9195759544130577 1.670815242897161 0.9738735439422744 0.7939773092971114 1.1951975177127971 0.7964543142857583 1.5009939281489848 1.0 14.434897026075495 3.2413612899165813 24.90234601315638 1.0163362840745238 1.6816632301092305 0.5820341958246389 0.2519808281515444 44.43978987932332 395134.9500217726 0.06893699733447678 0.08932745016519397 1743.2564867651695 -3.2413612899165813 0.6653269460347067 HAFSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HAFSLK 6 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ; 121.68 0.019546 1435070000.0 2763300.0 3054700.0 2841700.0 2738700.0 2551400.0 3206200.0 3006500.0 2676300.0 4387400.0 3133800.0 False True 2748422.6998314927 3156373.8428948517 3241786.6595008173 3085419.139194763 2876305.6666674083 2984562.9405829767 2861064.109054667 2876019.0959760337 3306184.058147982 2933798.2010188373 0.9368138200088308 1.075866036661526 1.1049794285016001 1.0516807659515475 0.9804033780062095 1.0173034190103838 0.9752082157733577 0.9803056989322789 1.1269296085190263 1.0 21.48433820911466 3.2631012744705163 24.608896389773694 1.0077877694143504 1.0492047142874725 0.046846007507120424 0.05776855705855287 461.81038170142216 463090.5738913157 0.015919485132869886 0.021544252545927362 1832.7417552496913 -3.2631012744705163 0.041416944873122086 HAHGDQYK ddPTM_BT-474_Trastuzumab_2h_R1 2 HAHGDQYK 8 0 P48735;P48735-2 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ; 109.48 0.0036105 98104000.0 209371.0 216750.0 242530.0 151063.0 142524.0 245670.0 198244.0 9672.8 331440.0 108310.0 False True 208243.7697993048 223964.392721858 276676.1158914495 170187.56031116168 160673.58659406792 228687.41114497563 188654.18035437702 10394.633453483164 249761.05306846098 101397.5630711437 2.053735449768102 2.2087749048240695 2.7286268773276623 1.6784186439643798 1.5845902182218552 2.2553541152120333 1.8605395893194332 0.10251364173505792 2.4631859534259304 1.0 16.62966345431827 1.976491459337426 24.123947484468097 1.0620157825515533 2.076866970985371 0.2934990869916906 0.6134695624761244 509.1024844498237 522428.7812136032 0.24336337430457056 0.15827155323267852 94.73085549277471 -1.976491459337426 1.0148511884338178 HAHLTDTEIMTLVDETNMYEGVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HAHLTDTEIMTLVDETNMYEGVGR 24 0 O60925;E5RGS4 O60925 PFDN1 Prefoldin subunit 1 0 ; 235.85 1.2427e-37 286760000.0 218275.0 316238.0 285518.0 324408.0 312104.0 314144.0 276086.0 89697.0 228934.0 162215.0 False True 217099.83165263236 326763.7906600918 325716.4526330554 365478.01953769836 351848.5944146599 292427.9646954337 262730.6654290593 96390.64561213713 172516.28325843322 151862.29982075136 1.429583457572309 2.151711063547589 2.144814433980721 2.4066408843345943 2.3168923085582116 1.9256126440900547 1.7300585184023285 0.6347239948684469 1.1360046796476841 1.0 17.212404236230128 1.9320727882345041 3.4038563418251164 0.904115650543505 2.0900430634167733 0.7679948771798459 0.27870695454969907 0.1102521657871825 2.329628255513124 0.14031615520016286 0.07897344545492906 85.52100350196508 -1.9320727882345041 1.1859274128732684 HAHQVELR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAHQVELR 8 0 Q9H7M6 Q9H7M6 ZSWIM4 Zinc finger SWIM domain-containing protein 4 0 69.423 0.053956 386470000.0 80971.0 287760.0 265500.0 361850.0 314290.0 208030.0 189390.0 155080.0 107510.0 208660.0 False True 80535.06113272383 297337.91764540644 302880.0922326303 407660.17289868393 354312.9685572232 193649.37574994587 180228.4821599412 166652.85708028375 81015.60106019264 195343.14015718657 0.4122748363107082 1.5221313500241054 1.5505028330603883 2.086892698513254 1.813797854749947 0.9913292864756972 0.9226250894447429 0.8531287914496684 0.4147348148238115 1.0 17.575651067890437 2.562510164246274 4.709745024868518 0.8123993231398472 1.5155995397781283 0.36148225870135 0.42951100731943964 0.250295373558257 9.6669276655572 0.14845791150436347 0.13769168600843512 365.18267390544446 -2.562510164246274 0.7032002166382811 HAIIVEPEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAIIVEPEKR 10 1 P09467;A0A3B3IUC7;Q5VZC3 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 104.22 0.0017594999999999996 329860000.0 287130.0 259080.0 245000.0 227840.0 197190.0 270630.0 267070.0 275150.0 393580.0 289900.0 False True 285584.1239831418 267703.3211828325 279493.8704218248 256684.5206390382 222300.97766330084 251921.98509449538 254150.80379352425 295683.09018338984 296587.48270180123 271398.3338041229 1.0522692603899964 0.9863852789016853 1.02982898422488 0.9457851750272566 0.8190948505370809 0.9282370365483369 0.9364493887311527 1.0894801233260114 1.0928124669912607 1.0 18.050052338082644 1.7396307593956601 8.479606769003924 1.0669214092309904 0.9539767644134541 0.35148166484919574 0.06434936230701056 0.1223843260882259 31.980761322633498 0.033527057450062375 0.017964960270479582 54.90738484215913 -1.7396307593956601 -0.1129446448175363 HAIVICNR ddPTM_BT-474_Trastuzumab_2h_R1 3 HAIVICNR 8 0 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ;; 116.54 0.0022513000000000003 574210000.0 530210.0 663410.0 630160.0 629080.0 617470.0 604540.0 616010.0 1222790.0 768330.0 856080.0 False True 527355.4082718694 685491.2008101861 718881.0505510905 708721.4634989739 696101.1444685756 562749.5727340878 586211.2429132769 1314040.7990018064 578985.3665945296 801444.2414730389 0.6580063602460983 0.8553198904396226 0.8969819899507933 0.8843053912226727 0.8685584204699697 0.7021693383182404 0.7314435772048621 1.6395910420251134 0.7224275085318047 1.0 19.612242626321855 HAIYDKLDDDGLIAPGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAIYDKLDDDGLIAPGVR 18 1 P30876;C9J2Y9;C9J4M6 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2;DNA-directed RNA polymerase 0 68.243 0.017315 296100000.0 328880.0 311450.0 338190.0 284680.0 312140.0 367840.0 325420.0 280570.0 453270.0 319960.0 False True 327109.34662200266 321816.42497449927 385804.2123998243 320720.45881110214 351889.17880127137 342412.08660222165 309678.19137487793 301507.5581055923 341567.6820068233 299539.87886846234 1.0920393900728222 1.0743692165136358 1.2879894785870678 1.070710384282224 1.1747657110985121 1.1431268781162387 1.0338462863265951 1.0065690059185544 1.1403078725180922 1.0 18.192388561643867 2.2408718409514132 24.917876256499767 1.0411082142695842 1.1425835562767683 0.31449610943817186 0.06879584425512893 66.7114951484449 719240.7758961814 0.02389876083741444 0.019109128380167366 174.12929470415443 -2.2408718409514132 0.10147534200718411 HALIIYDDLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 HALIIYDDLSK 11 0 P25705;P25705-2;P25705-3 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial 0 ;;; 185.96 4.2381e-06 2645120000.0 3654460.0 3196830.0 3451590.0 2668950.0 3631510.0 6560850.0 3465510.0 2774370.0 5206120.0 4073670.0 False True 3634784.7934086802 3303234.554025452 3937543.8702419 3006838.7963463943 4093961.2728538606 6107313.882079663 3297870.041766189 2981407.577365405 3923141.484433913 3813684.892955646 0.9530899629706123 0.866152985037369 1.032477506863516 0.7884339898926632 1.073492275257434 1.601420687210062 0.8647463370289896 0.7817655787116651 1.028701005602337 1.0 21.86275421471826 4.2317950214434825 24.641879139067335 1.0075997535313856 0.9096214775778098 0.03694625295880405 0.2193873033421166 563.1056741468799 2050996.7106415385 0.059208640871368144 0.13268954162695484 17052.773412654376 -4.2317950214434825 -0.09797827595357589 HALLEADVAAHQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 HALLEADVAAHQDR 14 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 136.17 1.6567999999999998e-05 505270000.0 158810.0 214440.0 214450.0 196180.0 157510.0 199100.0 176430.0 130250.0 202430.0 188260.0 False True 157954.98460544983 221577.5057682825 244642.695967185 221016.3678852115 177567.96486508712 185336.68563098708 167895.40687194932 139969.91639609862 152543.8389230286 176245.08562250488 0.8962234836083307 1.257212392536573 1.388082368952853 1.2540285427226106 1.0075059071174086 1.051584984491172 0.9526246151995436 0.7941776980715186 0.8655210917469699 1.0 17.42722350473186 2.651519759029171 1.3399419848392482 0.8726843904375953 1.2072264979062963 0.46197922488925347 0.134386567257986 0.3484109471201371 1.2736403808590169 0.06470464454772185 0.05649729463095979 448.2494434686061 -2.651519759029171 0.33454210746870106 HAPEHHPGHGDRLS(ph)PGER ddPTM_BT-474_Trastuzumab_2h_R1 5 HAPEHHPGHGDRLSPGER 18 1 C9JPC9;Q9H9J4-2;Q9H9J4 C9JPC9 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER 113.73 0.00011955 185727700.0 54696.399999999994 56076.5 53701.6 60396.700000000004 54290.5 58588.799999999996 53368.100000000006 16303.699999999999 59897.0 31032.4 True False 54401.92065974135 57942.97240353988 61262.318497325155 68042.91602738685 61204.07336999557 54538.694159200284 50786.481117059906 17520.364882511112 45136.18692867978 29051.88566382571 1.8725779554984456 1.9944651123175885 2.1087209004683176 2.342117025199203 2.1067160348288345 1.8772858598679454 1.7481302833398273 0.6030715212516067 1.5536405261597743 1.0 14.826344186881864 1.9401126663705548 4.762926685768508 1.0293833242552843 2.0514464911383534 0.7618950621153856 0.2490711520408118 0.09575238865759197 4.324688104830892 0.11174922770071821 0.067031464546918 87.11895680427712 -1.9401126663705548 1.022063166883069 HAPEHHPGHGDRLS(ph)PGERR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAPEHHPGHGDRLSPGERR 19 2 C9JPC9;Q9H9J4-2;Q9H9J4 C9JPC9 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 HAPEHHPGHGDRLS(1)PGERR 50.827 0.087489 21363000.0 14923.0 23758.0 17207.0 24365.0 22028.0 15791.0 15254.0 14111.0 18180.0 18168.0 True False 14842.656226101159 24548.770667985737 19629.596034074853 27449.606501800266 24833.13522981486 14699.405338015655 14516.10574406118 15164.03447420612 13699.782599519145 17008.502685592655 0.8726609567268897 1.4433234436785665 1.1541048848881001 1.6138755426750133 1.4600424087212682 0.8642386463840253 0.8534617074998199 0.8915561089954777 0.8054667040811171 1.0 14.053968520953411 2.728497060702941 24.542776631665014 0.8751806519054152 1.3246291978295561 0.5492899592027062 0.1925465852311661 391.95587189395576 955891.3838575776 0.060841039118450506 0.0579926245116427 535.1765316941145 -2.728497060702941 0.44944854592414096 HAPHCLS(ph)EEEGEQDRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HAPHCLSEEEGEQDRPR 17 1 E9PH18;A0A0J9YX62;O75190-3;O75190;O75190-4 E9PH18 DNAJB6 DnaJ homolog subfamily B member 6 1 HAPHCLS(1)EEEGEQDRPR;HAPHCLS(1)EEEGEQDRPR 227.06 1.1327e-15 2689300000.0 433300.0 492390.0 473290.0 510440.0 491030.0 526680.0 446730.0 295098.0 579550.0 450090.0 True False 430967.1609441555 508778.9034939598 539925.1180895728 575061.6516634079 553559.7599371707 490271.85127136233 425119.96322567546 317119.7112372813 436727.6680721302 421364.8708585647 1.0227885396948857 1.2074544858409342 1.2813719306724172 1.3647593604366537 1.313730209187226 1.1635328077359515 1.0089117357112838 0.7526012089976188 1.0364596060945057 1.0 18.684710516283772 2.212970402044121 2.9677000054595433 0.8992247580106744 1.2438765503920772 0.5965423864715587 0.11200499768505706 0.15792253685953564 2.8636927060744473 0.047856226968118705 0.034278302721346424 163.29406562374186 -2.212970402044121 0.34465179238140287 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK ddPTM_BT-474_Trastuzumab_2h_R1 5 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK 30 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(0.996)PEPAVQGT(0.004)GVAGVPEESGDAAAIPAK;HAPS(0.998)PEPAVQGT(0.002)GVAGVPEESGDAAAIPAK 260.02 1.8211e-58 4909040000.0 1527977.0 1178730.0 1222353.0 1074928.0 1088625.0 1663906.0 1727551.0 1275096.0 2218978.0 1730056.0 True False 1519750.5416062044 1217963.315492667 1394449.6775172595 1211013.774585149 1227254.9409641004 1548884.0946334163 1643982.7582443047 1370250.1383262915 1672140.6046818364 1619642.3449045375 0.938324776693696 0.7519952286530607 0.8609614844315824 0.7477044412891827 0.757732066480662 0.9563124226198891 1.015028264367342 0.8460201986180194 1.0324134892758643 1.0 20.627243836631955 2.726490037153423 24.317887094373145 0.9548286820407269 0.8072675093083281 0.5394804225852048 0.0725540665025715 431.17703116712147 868665.3388125448 0.022882582966351917 0.02173510662736391 532.7090036773611 -2.726490037153423 -0.14756117273239877 HAPSLHGS(ph)TELLPLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 HAPSLHGSTELLPLSR 16 0 Q9H5N1;B4DHR0;Q9H5N1-2;H3BU67;H3BNR2;H3BT64 Q9H5N1 RABEP2 Rab GTPase-binding effector protein 2 1 HAPSLHGS(0.788)T(0.212)ELLPLSR;HAPSLHGS(0.887)T(0.113)ELLPLSR;HAPSLHGS(0.909)T(0.091)ELLPLSR 264.69 3.1885e-27 2042120000.0 904170.0 1131770.0 1033810.0 1139760.0 1164630.0 1316390.0 1127920.0 686820.0 1191090.0 907870.0 True False 899302.0491827298 1169440.2802805866 1179361.4619623944 1284053.4991377746 1312938.7271971689 1225391.0577487457 1073358.2005271723 738073.9960012924 897561.8292882972 849928.9593333891 1.058090843131248 1.375927090656841 1.3876000446994814 1.5107774420874838 1.5447629037454198 1.441757036623198 1.2628799015967427 0.8683949263008687 1.0560433544849057 1.0 19.69698273415706 1.9168351629506393 4.239536187904342 0.9709428901940449 1.3967288158425857 0.6619692617770897 0.13119457509152177 0.13520360589983826 4.220086718316453 0.06429900262116817 0.037248975444858674 82.57244852642748 -1.9168351629506393 0.4257859256485408 HAPSLHGST(ph)ELLPLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAPSLHGSTELLPLSR 16 0 Q9H5N1;B4DHR0;Q9H5N1-2;H3BU67;H3BNR2;H3BT64 Q9H5N1 RABEP2 Rab GTPase-binding effector protein 2 1 HAPSLHGS(0.396)T(0.604)ELLPLSR 98.391 0.010118 375710000.0 189770.0 195180.0 184040.0 195220.0 181820.0 292750.0 203200.0 118950.0 249430.0 163640.0 True False 188748.299405429 201676.44831119856 209951.23229564345 219934.83198364248 204973.69926842808 272512.8815593743 193370.4397006183 127826.6530158613 187961.31869076242 153196.35510074752 1.2320678209432674 1.3164572236628527 1.370471459047259 1.4356401093159514 1.3379802615645124 1.7788470318380607 1.2622391673316955 0.834397482445309 1.2269307488885894 1.0 17.22502244702193 1.9913022071402182 24.92352214693556 1.0136113806779303 1.413167788177792 0.5396026701227499 0.16175927497974396 282.4115910116953 809250.3987985725 0.06236136758072648 0.043757708934621116 98.01718082123789 -1.9913022071402182 0.39955640749986165 HAPTYT(ph)IPLSPVLS(ph)PTLPAEAPTAQVPPSLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 HAPT(0.156)Y(0.016)T(0.558)IPLS(0.299)PVLS(0.825)PT(0.144)LPAEAPT(0.001)AQVPPSLPR 65.50399999999999 0.008291 865450000.0 137570.0 149980.0 166960.0 161480.0 145270.0 149860.0 152990.0 148550.0 164630.0 145660.0 True False 136829.33840546373 154971.9936351754 190466.51675766474 181923.35144308247 163769.27341725078 139500.5309324947 145589.28922144478 159635.55532161574 124059.14242897906 136363.85409419995 1.0034135461655567 1.1364594720835697 1.396752226041446 1.3341024471001683 1.2009727541443584 1.0230022600866644 1.0676530829120736 1.1706588698449352 0.9097655918648294 1.0 17.057101754944092 2.8156844333579034 5.413981578127127 1.0580628910461487 1.2288791520603077 0.3595198608902407 0.11761473705362054 0.2866281831092498 14.88694251771725 0.038762157012997095 0.04106025422511287 654.1606757290332 -2.8156844333579034 0.17081626101415903 HAPTYTIPLS(ph)PVLS(ph)PTLPAEAPTAQVPPSLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 HAPTYTIPLS(1)PVLS(0.992)PT(0.008)LPAEAPTAQVPPSLPR 224.51 2.3304999999999998e-36 1092800000.0 305180.0 318420.0 317690.0 360570.0 296090.0 351120.0 316350.0 265330.0 306030.0 285040.0 True False 303536.9447886852 329018.4172110449 362417.9905890184 406218.12502992485 333795.3064370742 326847.90084757534 301046.94192564295 285130.27191844035 230613.00709190549 266848.5031649786 1.137487904891953 1.2329783128205516 1.3581413659455837 1.5222799461564949 1.2508794408740074 1.2248444228503026 1.1281567569428008 1.0685099168128334 0.8642094834960697 1.0 18.025661393267185 1.9323719568126987 1.2504040888850267 0.943893166077275 1.3087436146217857 0.6640965717888632 0.10167554800975288 0.2870251017381872 0.8299087852790548 0.08230656708483647 0.03646286046268327 85.5799358910176 -1.9323719568126987 0.36485044854451065 HAPTYTIPLS(ph)PVLSPTLPAEAPTAQVPPSLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 HAPTYTIPLS(0.998)PVLS(0.002)PTLPAEAPTAQVPPSLPR;HAPTYTIPLS(0.998)PVLS(0.001)PTLPAEAPTAQVPPSLPR;HAPT(0.004)YT(0.004)IPLS(0.991)PVLS(0.001)PTLPAEAPTAQVPPSLPR;HAPTYT(0.001)IPLS(0.999)PVLSPTLPAEAPTAQVPPSLPR 207.48 2.4701e-27 893890000.0 643990.0 621463.0 628155.0 623845.0 632595.0 749564.0 771969.0 683210.0 934652.0 761160.0 True False 640522.829394016 642148.0202726834 716593.7639788616 702823.7130357311 713152.2235656761 697748.4049638632 734625.9102620396 734194.599470085 704319.5382951475 712582.1171381386 0.8988758123294953 0.9011565191274633 1.0056297326921906 0.9863055725540811 1.0008000571636952 0.9791831540288292 1.0309350916809883 1.03032981296071 0.9884047344940746 1.0 19.44269675268791 4.240113781629209 9.871319636402578 1.0051381800800716 0.8998509355444637 0.8636374535659642 0.016297766309382424 0.03232781420249346 53.80540083090408 0.00451832087836763 0.011013396265988675 17382.56178107568 -4.240113781629209 -0.1052872445356079 HAPVLELEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HAPVLELEGK 10 0 P40123;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;B7Z385 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 0 107.79 0.0022375 110650000.0 281980.0 292910.0 300120.0 247560.0 240110.0 289030.0 313060.0 315020.0 431380.0 314180.0 False True 280461.8510109233 302659.3322821657 342374.28731019644 278901.07061710116 270686.5852565298 269050.03640343616 297916.0917946632 338528.3920391477 325072.1791958506 294128.7634169696 0.9535342540210134 1.029002837961491 1.1640285816754068 0.9482278012426788 0.9202996065801046 0.9147355507765121 1.0128764298115398 1.1509530319523196 1.1052036374117356 1.0 18.16608834948099 1.8983052444305069 6.715651778623389 1.09886094483349 0.990944619654632 0.23975538786984962 0.07614911446938571 0.3408860855144831 19.30586718069129 0.035300375229623156 0.02171912713019113 79.12345528253006 -1.8983052444305069 -0.10791632517885807 HAQGGTWYGVDINNEDIADNFEAFVWEPAMVR ddPTM_BT-474_Trastuzumab_2h_R1 3 HAQGGTWYGVDINNEDIADNFEAFVWEPAMVR 32 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;; 322.51 1.3041999999999995e-104 411043000.0 102495.0 118007.0 108086.7 108353.8 114074.0 118789.0 136837.0 98744.0 133906.0 111478.0 False True 101943.17830826495 121934.79165826217 123304.36785356166 122071.37997023472 128600.64773042947 110577.39602922817 130217.6715418971 106112.77869187211 100906.66054847147 104363.3785988824 0.9768098702522902 1.1683676141505057 1.181490763416911 1.1696763904071419 1.2322392151053514 1.0595421259235882 1.2477333839716414 1.0167625858464537 0.9668780553406888 1.0 16.67125602942495 1.5928785741174252 6.365774593544138 0.9867928094872278 1.1505925192472193 0.4677350759841383 0.07543382677038137 0.10638532550979263 9.072562425483227 0.03904521624581883 0.018455495819026516 39.16323639641069 -1.5928785741174252 0.16379970975999147 HAQPTCPGAQLCTVYYASLNFR ddPTM_BT-474_Trastuzumab_2h_R1 2 HAQPTCPGAQLCTVYYASLNFR 22 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 252.37 5.3328e-37 1305910000.0 478100.0 534380.0 497100.0 486320.0 520920.0 653520.0 571310.0 490940.0 680460.0 574460.0 False True 475525.9627219035 552166.515260469 567087.3591293426 547888.0621364871 587256.0742652607 608343.700620606 543673.552683859 527576.4357428069 512769.7506968533 537797.4709800504 0.8842101132519888 1.0267183188017477 1.0544626736453706 1.018762808865665 1.0919651094585474 1.1311762019110954 1.010926198096656 0.9809946387092202 0.9534625548952693 1.0 19.03670344531677 1.8547287860294774 3.9893718097696405 0.9764593316301869 1.0390216595391015 0.13821658753389487 0.061170360298806625 0.43709686437930395 11.097541646059826 0.031315358008883534 0.017287591061429082 71.56963231063574 -1.8547287860294774 0.06256232790891458 HAQVHAGGPAPHPCPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAQVHAGGPAPHPCPR 16 0 Q8NAF0 Q8NAF0 ZNF579 Zinc finger protein 579 0 102.52 0.00052508 15369000.0 7282.5 10909.0 7752.0 8794.3 7974.0 7159.8 7340.2 5954.5 8459.6 8252.1 False True 7243.291829161815 11272.099470370242 8843.414218408097 9907.657478300105 8989.441634399107 6664.859878356308 6985.1264837129875 6398.855026338337 6374.844932832353 7725.443913021751 0.9375890771729977 1.4590876067808047 1.1447127592890725 1.282470960872564 1.1636148984586898 0.862715457311423 0.9041715353002682 0.8282831508947518 0.8251752267707396 1.0 12.915402119001397 2.789765880689686 4.109397702336201 0.8700486533811681 1.2195560375614924 0.5911592931284766 0.13003817953937033 0.13612987060200338 4.875389938651131 0.038051588168305166 0.03962105590836176 616.2626976308765 -2.789765880689686 0.34950738418032434 HAS(ph)APSHVQPSDSEK ddPTM_BT-474_Trastuzumab_2h_R1 6 HASAPSHVQPSDSEK 15 0 O60343-2;O60343-3;O60343;A0A3B3IRT3 O60343-2 TBC1D4 TBC1 domain family member 4 1 HAS(0.97)APS(0.03)HVQPSDSEK;HAS(0.998)APS(0.002)HVQPSDSEK;HAS(0.994)APS(0.006)HVQPSDSEK;HAS(0.996)APS(0.004)HVQPSDSEK;HAS(0.999)APS(0.001)HVQPSDSEK;HAS(1)APSHVQPSDSEK 207.82 2.0622e-09 5826000000.0 8416480.0 5353890.0 5243245.0 5519656.0 5135937.0 6732900.0 6373040.0 5532964.0 10458380.0 6897320.0 True False 8371166.606838828 5532090.992155154 5981448.320897476 6218443.883656919 5789968.133866426 6267470.4705417985 6064751.707822973 5945861.869501902 7881052.384112166 6457127.132507265 1.2964227643429336 0.8567418417867012 0.926332748008775 0.9630356900286604 0.8966786645283558 0.9706283215316184 0.9392337464274249 0.92082155848667 1.2205199343894597 1.0 22.622461001494177 1.2564523825676184 24.99943492571002 1.1102600601953467 0.9597870576004411 0.16122319243000072 0.1246704376741862 318.292675307205 444740.2244836018 0.07727847571711484 0.02809158308611892 18.048968316360874 -1.2564523825676184 -0.1504730025949056 HAS(ph)PILPITEFSDIPR ddPTM_BT-474_Trastuzumab_2h_R1 6 HASPILPITEFSDIPR 16 0 P42167;G5E972;H0YJH7 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 1 HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR 230.05 1.6863e-15 419540000.0 305905.0 388792.0 400467.0 365224.0 417174.0 444412.0 341088.0 315377.0 480306.0 366135.0 True False 304258.0414692404 401732.7066902733 456849.27267843677 411461.3209527399 470298.6361159786 413690.8444733213 324588.2703573056 338912.0331919569 361941.02207066223 342767.9508360555 0.8876502039561037 1.172025289150853 1.3328237706125152 1.2004077976051506 1.3720612880196623 1.2069122666348346 0.9469621344865898 0.9887506470931909 1.0559360091509171 1.0 18.38687269668935 2.2467185840881276 24.86959640807788 0.9943074304456635 1.2087709480094633 0.37694833535373096 0.12357101842524731 170.77950585059017 520622.54295104684 0.04456702635240627 0.036684516940448275 176.48938269721967 -2.2467185840881276 0.21446351756379978 HAS(ph)S(ph)SPESPKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HAS(0.628)S(0.745)S(0.628)PESPKPAPAPGSHR 126.45 3.3653000000000005e-05 393890000.0 350290.0 298650.0 154850.0 266750.0 263430.0 343650.0 316850.0 271150.0 468010.0 283010.0 True False 348404.07756087737 308590.384712263 176651.53401967164 300520.52264950634 296976.2490280612 319894.2843650861 301522.7550154573 291384.5898718009 352675.20651270344 264948.0595029486 1.3149901086820377 1.164720305146559 0.6667402446769221 1.1342620255958578 1.120884786192428 1.2073848925907156 1.138044775950139 1.099780049034698 1.3311107360979881 1.0 18.015350035463182 3.5088481589015603 24.997106931456074 1.1504444938455234 1.0337562654025323 0.06359911446993871 0.1711885728958795 1725.835819030304 1359753.237295421 0.04568097077930545 0.07069361572928202 3227.365550138729 -3.5088481589015603 -0.1166882284429911 HAS(ph)SSPES(ph)PKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HAS(0.531)S(0.29)S(0.316)PES(0.863)PKPAPAPGSHR 65.741 0.037391 552410000.0 275270.0 209790.0 149130.0 203290.0 177500.0 258360.0 244710.0 199260.0 308850.0 219190.0 True False 273787.9769053721 216772.73332926692 170126.20773880306 229026.49315620647 200103.57287507431 240500.18131402234 232872.44241701905 214129.7930217779 232738.0558779697 205201.10654200002 1.3342422052160519 1.0563916393155437 0.8290706156790733 1.116107495791354 0.9751583519561462 1.1720218539113842 1.1348498375146692 1.0435118827098058 1.1341949358851702 1.0 17.64667898510084 2.736164321282961 21.863049382032475 1.0980438585632586 1.0519156113343802 0.015248149523105159 0.12653900314860314 176.1626040453087 1607235.3975033269 0.040272136562319615 0.03970234094849704 544.7087118809193 -2.736164321282961 -0.04612824722887843 HAS(ph)SSPESPKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HAS(0.333)S(0.333)S(0.333)PESPKPAPAPGSHR;HAS(0.333)S(0.333)S(0.333)PESPKPAPAPGSHR;HAS(0.333)S(0.333)S(0.333)PES(0.002)PKPAPAPGSHR;HAS(0.317)S(0.317)S(0.317)PES(0.048)PKPAPAPGSHR 142.04 9.61e-08 1308310000.0 526910.0 584124.0 488037.0 462382.0 479950.0 497590.0 486232.0 388181.0 568382.0 487126.0 True False 524073.175105205 603566.2142295853 556748.3675063506 520919.5137909056 541068.7876134751 463192.7745008687 462711.1005733807 417149.03736317775 428311.8720285965 456037.2016304498 1.1491895249587296 1.3235021442805137 1.220839803234983 1.1422741651963588 1.1864575646000275 1.0156907656762122 1.0146345493724416 0.9147258948870028 0.9392037984999292 1.0 18.798791992727246 2.711873934240537 1.123388003782582 0.9423696283439995 1.232844245704714 0.8267015895105421 0.05264733764233097 0.17193686862575897 0.4512668505548414 0.025948353828841603 0.02346813404995874 515.0791071898394 -2.711873934240537 0.29047461736071445 HASS(ph)S(ph)PESPKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HAS(0.613)S(0.714)S(0.668)PES(0.005)PKPAPAPGSHR;HAS(0.609)S(0.721)S(0.67)PESPKPAPAPGSHR 88.976 0.0032793 288020000.0 211939.0 172355.0 101984.0 150579.0 165614.0 191065.0 178178.0 138884.0 266577.0 171032.0 True False 210797.94397263633 178091.73198420226 116342.46073918123 169642.28596078727 186703.96122891555 177857.12626863163 169558.84943394098 149248.2293186621 200882.67029879053 160116.59133213793 1.3165278015153814 1.1122628236244274 0.7266109012890875 1.0594922396823305 1.1660500618678928 1.1107976056003692 1.0589711411118945 0.932122199685534 1.2546024657875052 1.0 17.288763282555905 -1.883904196318852 7.849068562146282 0.9921410046149729 1.0640635434288672 0.012696323254304476 0.1569335556602585 0.023643387015822536 0.0003497097965195754 0.1664595672224914 0.03564107427263253 0.013064590561555614 1.883904196318852 0.07192253881389432 HASS(ph)SPESPKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HAS(0.294)S(0.353)S(0.353)PESPKPAPAPGSHR;HAS(0.234)S(0.255)S(0.255)PES(0.255)PKPAPAPGSHR 119.02 4.1002e-05 159410000.0 128010.0 119788.0 102968.0 102743.0 112887.0 119910.0 108926.0 103469.0 144156.0 111086.0 True False 127320.80838324793 123775.07116662501 117464.9993860997 115750.25326552283 127262.4903163297 111620.90393777842 103656.83324227136 111190.38218493601 108630.68539143469 103996.39637449055 1.2242809637823053 1.190186155305916 1.1295102857517176 1.1130217709535501 1.2237201937080402 1.073315113110574 0.9967348567444931 1.069175337427462 1.0445620154015345 1.0 16.666174012200045 2.5639065917221098 5.236047599365191 1.0356516338074924 1.1702386546998034 0.7659241858085925 0.03897918401177159 0.11616515098324723 5.256523009815409 0.01314058509586929 0.01224641566510268 366.3587695430674 -2.5639065917221098 0.134587020892311 HASSS(ph)PESPKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HAS(0.069)S(0.069)S(0.431)PES(0.431)PKPAPAPGSHR 52.784 0.044563 52913000.0 71516.0 84774.0 74384.0 71202.0 68944.0 67776.0 64195.0 47039.0 71609.0 61577.0 True False 71130.96580217453 87595.65134303494 84856.62064268175 80216.16589949446 77723.6097368964 63090.80464754278 61089.64260128539 50549.28903920214 53961.921461439335 57647.103141278014 1.2339035602162192 1.5195152326797905 1.4720014713440206 1.3915038489081673 1.3482656630015926 1.0944314841445488 1.0597174753355882 0.8768747479872323 0.936073428168502 1.0 15.81496049152505 2.587363804414487 1.4595284229475416 0.9339633170287857 1.4229915613733255 0.8676311073687714 0.07973614569099101 0.1247121969991302 0.5377567641092398 0.035655499441561524 0.029816430796859705 386.6907686468849 -2.587363804414487 0.48902824434453984 HASSSPES(ph)PKPAPAPGSHR ddPTM_BT-474_Trastuzumab_2h_R1 6 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HASS(0.006)S(0.006)PES(0.987)PKPAPAPGSHR;HAS(0.005)S(0.004)S(0.004)PES(0.987)PKPAPAPGSHR;HAS(0.001)S(0.035)S(0.019)PES(0.945)PKPAPAPGSHR;HAS(0.002)S(0.002)S(0.002)PES(0.994)PKPAPAPGSHR;HAS(0.011)S(0.01)S(0.011)PES(0.968)PKPAPAPGSHR;HAS(0.004)S(0.011)S(0.004)PES(0.981)PKPAPAPGSHR 184.14 1.5422999999999995e-14 4171576000.0 797370.0 1111156.0 1240657.0 1276550.0 1354089.0 1491411.0 1515586.0 1468712.0 1573850.0 1403077.0 True False 793077.0485161347 1148140.1557520141 1415330.7216160395 1438161.0991123808 1526524.2078356978 1388313.2679738614 1442271.3150792369 1578314.7474084205 1185995.7560095282 1313531.4246253448 0.6037747050797373 0.8740865534142018 1.077500465601522 1.0948813801866855 1.1621527884428835 1.0569319027672646 1.0980105142826044 1.201581262403828 0.9029062676196017 1.0 20.32501928491474 4.593568969538938 1.8848053522499273 1.0944259747758598 0.5272709066235055 0.7692712686740034 0.07987915073375412 0.24651961851407395 1.1510025441427756 0.020014439734123333 0.22148433815380525 39225.543477874 -4.593568969538938 -0.5671550681523543 HATAEEVEEEERDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HATAEEVEEEERDR 14 1 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 ; 222.29 2.3719e-12 1115530000.0 50518.0 67254.0 75802.0 53554.8 64642.0 73307.9 74182.0 61673.0 64527.0 69982.0 False True 50246.016701077475 69492.50873409852 86474.26271720469 60334.832188902656 72873.77553684809 68240.29742123476 70593.53325724043 66275.35242914842 48625.18546750119 65515.68884539551 0.7669310601258953 1.0607002682683768 1.3199016028247432 0.9209218929420298 1.1123103003437276 1.0415871163664143 1.0775057776440031 1.011595139990752 0.7421914708436833 1.0 15.999552805423335 1.4104083169934498 7.546331144882517 0.8702950637966729 1.0506522586366571 0.1794296214318324 0.14415830309885674 0.35514801112489514 32.02156666476679 0.0913427868657055 0.03427302914285993 25.728135657602294 -1.4104083169934498 0.18035719483998425 HATALEELSEQLEQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HATALEELSEQLEQAK 16 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ; 127.88 6.3828e-05 112519000.0 85533.0 88286.0 84930.0 86977.0 78842.0 116154.0 113052.0 94095.0 138452.0 111374.0 False True 85072.49983160973 91224.54613998602 96887.4057752065 97988.27928204722 88882.06136685415 108124.54737710538 107583.2428594208 101116.84670472845 104332.35976175057 104266.01596792128 0.815917814082235 0.8749211839843615 0.9292328365650329 0.9397911522024062 0.8524547575904291 1.0370066063555283 1.0318150344645383 0.9697967814924308 1.0006362935536897 1.0 16.66990948288155 2.737562510372864 24.999676105895862 1.0049988158243095 0.8878276878076337 0.7360287900073303 0.037456983003846894 52.57695845145204 1316886.438346044 0.012578158697065923 0.012477630319935505 546.4651999373983 -2.737562510372864 -0.11717112801667584 HATLQK ddPTM_BT-474_Trastuzumab_2h_R1 6 HATLQK 6 0 Q13263;Q13263-2;M0R3C0 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;;;; 129.96 0.015968 3772620000.0 5992920.0 8208050.0 8831780.0 8798700.0 8056220.0 7401310.0 9634630.0 8378520.0 10825620.0 9310880.0 False True 5960654.784596008 8481249.982378988 10075217.856792085 9912614.517848954 9082131.864042994 6889674.860509695 9168566.139039205 9003767.7076625 8157791.006876051 8716651.666954583 0.6838239053641727 0.9729940241310756 1.1558587221040297 1.1372043872566742 1.0419289666551632 0.7904038297903906 1.0518449617297272 1.032938799401196 0.9358858560108338 1.0 23.055342627358904 4.7194865376715756 4.18317197315878 1.0211250777178393 0.6622016082094161 0.5118657849437305 0.09718748739884156 0.16613923810835213 6.445452613732707 0.0245426069558991 0.17238937055457068 52418.73519149186 -4.7194865376715756 -0.35892346950842324 HAVSDPSILDSLDLNEDER ddPTM_BT-474_Trastuzumab_2h_R1 6 HAVSDPSILDSLDLNEDER 19 0 P05198;G3V4T5;H0YJS4 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 ;;;;; 351.77 8.711599999999996e-91 3104070000.0 1892880.0 1998610.0 1732640.0 1848540.0 1915700.0 1938620.0 1847560.0 1573500.0 2146750.0 1877470.0 False True 1882688.94439874 2065132.5256647442 1976580.6516231452 2082564.9744649213 2159653.039756504 1804607.7624206129 1758186.464435405 1690922.5600711002 1617712.2274762227 1757648.257217063 1.0711409047107399 1.17494072957153 1.1245598449559664 1.184858782702239 1.228717424483979 1.0267172370869597 1.00030620871732 0.9620369451783193 0.9203845085805704 1.0 20.745214954741925 2.5390772366639016 3.956910235800552 0.9710530084725923 1.1572466336644487 0.8013713896242561 0.04412925336133544 0.09844349545071464 3.059510764244628 0.015350914432501184 0.013959519516808636 346.00090653678876 -2.5390772366639016 0.18619362519185634 HAVSDPSILDSLDLNEDEREVLINNINR ddPTM_BT-474_Trastuzumab_2h_R1 5 HAVSDPSILDSLDLNEDEREVLINNINR 28 1 P05198;G3V4T5;H0YJS4 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 ;;;; 370.46 9.693999999999995e-128 1354474000.0 454634.0 563987.0 504404.0 602712.0 576593.0 564339.0 573949.0 498530.0 710948.0 570380.0 False True 452186.30105858576 582758.9663576586 575419.6988418365 679015.2774025468 650018.7008155369 525327.5732411132 546184.8941719006 535732.8400840454 535744.3916151229 533977.8600731139 0.8468259358106551 1.0913541738937742 1.0776096573798926 1.2716169118127367 1.2173139551638608 0.9838002893400556 1.022860562228395 1.003286615686072 1.0033082486636564 1.0 19.02642040019816 2.6954774134405013 24.995988555808008 1.0045707838150306 1.1085969062877887 0.17952471384784785 0.10438704972599724 844.8391739403017 490157.5165576734 0.03558046341703081 0.033545780767773405 495.995131270694 -2.6954774134405013 0.10402612247275811 HAVSDPSILDSLDLNEDEREVLINNINRR ddPTM_BT-474_Trastuzumab_2h_R1 2 HAVSDPSILDSLDLNEDEREVLINNINRR 29 2 P05198;G3V4T5;H0YJS4 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 ; 154.71 9.7215e-09 200288000.0 32475.0 51240.0 45083.0 46427.0 42088.0 52843.0 54230.0 40637.0 58475.0 45110.0 False True 32300.158208311692 52945.49242476588 51430.29453153926 52304.653439732414 47447.6573248796 49190.087789041914 51606.68772128215 43669.539290504865 44064.61977485598 42231.04117938596 0.7648439940447932 1.2537103264839682 1.2178315545922103 1.238535730567392 1.1235256342209248 1.1647851062941077 1.222008415612369 1.0340625774535976 1.0434177927956234 1.0 15.366016195853238 1.6298503623067306 7.011114526983938 1.0268417937557222 1.151813027180364 0.1305763379591569 0.133771981669354 0.2335772608810594 24.21897448371724 0.06697113508455578 0.03323179406285038 42.64325646442712 -1.6298503623067306 0.12497123342464178 HAVSEGTK ddPTM_BT-474_Trastuzumab_2h_R1 16 HAVSEGTK 8 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;A0A2R8Y619;Q99880;Q96A08 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL;HIST1H2BA Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A 0 ;;;;;;;;;;;;;;; 161.02 0.00034996 126099242000.0 43932432.0 47275015.0 41717060.0 39508950.0 38979259.0 31571887.0 49179645.0 45775502.0 68222599.0 43906464.0 False True 43695904.66746409 48848535.295925 47590459.436814286 44510779.019056134 43943036.585481115 29389396.763917856 46800637.68686172 49191502.40252934 51410053.6124407 41104315.87730494 1.0630490675941417 1.188404045982332 1.1577971417617137 1.082873612394362 1.0690613782905343 0.714995399793157 1.138582085310947 1.1967478682619213 1.2507215487030134 1.0 25.29278654638828 -0.48903361167568926 6.693026961631484 0.999999982618516 1.0972102971978832 0.040471184168613505 0.13979457871155662 0.0 0.0 0.1419679621327064 0.033462169578423906 0.32431451646357035 0.48903361167568926 0.09721031457936724 HAVVNLINYQDDAELATR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAVVNLINYQDDAELATR 18 0 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y7Z0 A0A2R8Y804 CTNNB1 Catenin beta-1 0 199.76 1.5876e-15 219450000.0 74588.0 112230.0 93098.0 111720.0 101840.0 127530.0 103110.0 101660.0 98626.0 98408.0 False True 74186.42649550579 115965.50770553247 106205.38917767779 125863.74054509033 114808.72034702856 118714.1512733289 98122.17538154896 109246.38541902021 74320.94382069171 92127.51718867234 0.8052580679405033 1.2587499505499662 1.1528085464430209 1.3661905192487491 1.2461935787535259 1.2885851577895941 1.0650691386874116 1.1858171016949184 0.8067181889693859 1.0 16.491344512872512 1.2505527963273306 24.90774062960259 0.9033591187716861 1.1810898300697936 0.33087794739109533 0.15175590974455208 194.93836792927604 404892.18544857716 0.0992543135465919 0.03562507005212322 17.80544352977613 -1.2505527963273306 0.27773071129810756 HAYGDQYR ddPTM_BT-474_Trastuzumab_2h_R1 4 HAYGDQYR 8 0 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;; 147.19 0.00054134 1768720000.0 1033519.0 1361760.0 1775450.0 1036201.0 460703.0 751690.0 1168194.0 651404.0 2149900.0 910856.0 False True 1027954.6485387562 1407085.3583986978 2025417.9275119524 1167383.9403559165 519370.7962493817 699727.4395879285 1111683.9932855528 700015.0742424886 1620085.9521840606 852724.3902569441 1.2054946009331473 1.650105678312676 2.3752316113552827 1.3690049841357987 0.6090722889876342 0.8205786624410797 1.3036849959816192 0.8209159750098846 1.899893999391637 1.0 19.70171999668345 3.4804849245335303 24.833694140964397 1.0487045844142453 1.7572365274743473 0.33291943205849184 0.42272098422903426 131.0786608923591 967745.9070318886 0.11470814448013131 0.15854931730553104 3023.3256213650648 -3.4804849245335303 0.708531943060102 HAYKDDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 HAYKDDSPR 9 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 HAYKDDS(1)PR 109.16 0.0015108 482310000.0 1201200.0 901130.0 721780.0 841440.0 858020.0 910300.0 996890.0 537750.0 1426000.0 704940.0 True False 1194732.872665866 931123.5673054111 823400.3501757741 947966.217725213 967283.7611170198 847373.1036157086 948666.6222103814 577879.635639171 1074581.407421028 659950.1256705018 1.810338124342398 1.4108999015030115 1.247670571074153 1.4364209973626265 1.4656922144446454 1.2839956697557822 1.437482296478915 0.8756413752509734 1.6282766918625335 1.0 19.331997474413008 7.999999999999999 0.16715320603898176 1.0468420460250172 3.368981041207818 0.31739184117612274 0.21591823001802715 70.82346815535453 0.7551265349604299 0.559028951542648 40.99977341498263 99999999.99999979 -7.999999999999999 2.322138995182801 HCAPS(ph)PDRS(ph)PELSSSR ddPTM_BT-474_Trastuzumab_2h_R1 8 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 2 HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR 187.07 7.961100000000001e-10 21610570000.0 6019370.0 6903110.0 5137575.0 6664200.0 6432215.0 6731400.0 6338890.0 5058655.0 7182280.0 6020929.0 True False 5986962.380734881 7132875.843331888 5860900.903397582 7507887.036704185 7251319.453524762 6266074.162011188 6032253.673788639 5436157.523429602 5412303.331621253 5636668.156443343 1.0621456176892574 1.2654418612843499 1.0397810800158451 1.3319725107680556 1.2864549149014017 1.1116627745503103 1.0701807355632773 0.9644274547571984 0.9601954880800255 1.0 22.426411204543978 2.1661725106987464 2.0155015201748094 0.9743048191771032 1.197953698393161 0.5356183289423571 0.0886170399847612 0.24665857214748202 1.983030010265091 0.0445885566906187 0.027233339605859316 146.61301023303014 -2.1661725106987464 0.2236488792160577 HCAPS(ph)PDRSPELSSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 HCAPS(0.958)PDRS(0.042)PELSSSR;HCAPS(0.736)PDRS(0.264)PELSSSR;HCAPS(1)PDRSPELSSSR;HCAPS(0.997)PDRS(0.003)PELSSSR 189.55 6.0551e-10 1251310000.0 375749.0 434261.0 412609.0 419327.0 429061.0 427062.0 412863.0 359690.0 460155.0 408994.0 True False 373726.00913363876 448715.1148686823 470700.76073828025 472413.75520543347 483699.3751062098 397540.20913581405 392891.2394001794 386531.8942688115 346755.9660110967 382891.65276261984 0.976062043758725 1.1719114575393232 1.2293314762599412 1.2338053122780255 1.263280020904732 1.0382577062401406 1.0261159692707091 1.0095072365248152 0.9056242503831076 1.0 18.54657668346469 2.5694485234738376 4.872206337712513 0.9941673096797858 1.180539442901966 0.5630369567470916 0.07957952965954428 0.17587841229095783 6.903429014446543 0.02746548647891307 0.025556581724353353 371.0637450412772 -2.5694485234738376 0.18637213322218016 HCDLQVR ddPTM_BT-474_Trastuzumab_2h_R1 3 HCDLQVR 7 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;; 153.73 0.0017266999999999998 563260000.0 151610.0 162015.0 174934.0 165613.0 145103.0 148080.0 165587.0 140471.0 214722.0 170826.0 False True 150793.7486054544 167407.57133486454 199563.18664641443 186579.5888193166 163581.00695713752 137843.57814282546 157576.92420623166 150953.65931728503 161806.64022738984 159923.73842850322 0.9429103526920705 1.0467962603919936 1.2478646923054062 1.166678509724373 1.0228688283839071 0.8619331907654905 0.9853254166934027 0.9439102712370094 1.011773748021332 1.0 17.28702457692728 3.014209979663799 7.870816946445023 0.9565204969834044 1.1064380369534683 0.3880999635729644 0.08295451184841943 0.158568800605176 56.912812235293096 0.025478161398231964 0.02990030749874538 1033.2608625481253 -3.014209979663799 0.14991753997006396 HCECAEEGTR ddPTM_BT-474_Trastuzumab_2h_R1 6 HCECAEEGTR 10 0 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;;;;; 179.57 2.0916e-06 1257317000.0 600343.0 646962.0 565783.0 630677.0 602849.0 588293.0 599087.0 529610.0 678775.0 581718.0 False True 597110.8199923781 668495.7390732128 645440.3285260055 710520.6435352304 679618.2467840324 547625.6896027644 570106.8730754148 569132.1875050889 511499.99636901036 544592.2592061632 1.0964364805015219 1.2275160503523503 1.1851808717715628 1.304683699637847 1.247939601225131 1.0055700945897081 1.0468508566508887 1.045061103759897 0.9392347902899124 1.0 19.05481695060433 2.735007227210305 24.96961124798083 1.0162821913653535 1.216813932724806 0.7635958764015653 0.05689872978230226 153.30123163362785 1077241.1769383152 0.01844074206768323 0.0180219881365487 543.2593719413134 -2.735007227210305 0.2005317413594525 HCFAKEDDPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HCFAKEDDPEK 11 1 J3KN75;Q0IIM8;D6RFZ2;Q0IIM8-2;Q0IIM8-3 J3KN75 TBC1D8B TBC1 domain family member 8B 0 69.979 0.031858 113390000.0 534860.0 324100.0 196270.0 175140.0 165820.0 245060.0 248660.0 215130.0 493750.0 263780.0 False True 531980.3731885329 334887.4725774126 223903.10999057788 197312.70604249145 186936.19410785794 228119.57900918965 236631.3658265536 231184.09300800538 372071.9284110333 246945.33456658016 2.154243464944275 1.3561198601511621 0.9066909904718619 0.7990137023191787 0.7569942328975531 0.9237654941307879 0.9582337979450842 0.9361751798784224 1.5066975412354555 1.0 17.913832187185406 4.661780504266676 2.3269507519230035 0.9542796829099646 2.3365578208591846 0.7716341342657601 0.19512121605403424 0.21321833311874225 1.55890314684412 0.04946661019606695 0.5576302387338905 45896.59893078227 -4.661780504266676 1.38227813794922 HCGLSLSST(ph)PPGK ddPTM_BT-474_Trastuzumab_2h_R1 4 HCGLSLSSTPPGK 13 0 Q09GN1;Q71F23-3;Q71F23;D6R9S4 Q09GN1 MLF1IP;CENPU Centromere protein U 1 HCGLSLS(0.001)S(0.214)T(0.785)PPGK;HCGLSLS(0.002)S(0.223)T(0.775)PPGK;HCGLSLS(0.008)S(0.256)T(0.737)PPGK;HCGLSLSS(0.021)T(0.978)PPGK 151.56 0.00016480000000000002 1861790000.0 1867830.0 1812380.0 1733500.0 1580960.0 1511350.0 2278340.0 2378460.0 1780400.0 2596630.0 2200980.0 True False 1857773.8108154223 1872703.9726931558 1977561.7321478925 1781109.3739005178 1703811.4640267224 2120843.7184354737 2263404.8032004526 1913262.488688012 1956725.329559372 2060511.5720462198 0.9016080453120359 0.9088538973034939 0.959743084667099 0.8644015389497484 0.8268875977894793 1.0292801783827596 1.098467406787115 0.9285376091278245 0.9496308373634702 1.0 20.974571135289985 2.7250270784428756 24.993027371689667 0.9992662928737857 0.895415609868301 0.511671961379083 0.053125683575394676 740.1588647277251 1366884.324968239 0.018528380156267434 0.017552609107988604 530.9175461304252 -2.7250270784428756 -0.10385068300548461 HCKDDVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 HCKDDVNR 8 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 0 102.62 0.002962 39707000.0 205800.0 201470.0 209320.0 169160.0 151150.0 123910.0 212220.0 180280.0 294530.0 212360.0 False True 204691.99566652966 208175.80715881335 238790.4365579443 190575.6386556346 170398.0565637605 115344.39335276546 201954.10784087193 193733.4090432907 221947.02799980048 198807.002989457 1.0296015361057718 1.0471251214920896 1.201116826707597 0.9585962053144631 0.8571028887387682 0.5801827481845915 1.015829949670243 0.9744798026735741 1.1163944160033972 1.0 17.601009051257616 3.5378697490968407 8.051272747396904 0.9161332623724795 1.0874032232334272 0.22588322319695076 0.1395464131721854 0.5090371061747208 62.08625557168078 0.03953201164996174 0.06109844347290768 3450.4024149059132 -3.5378697490968407 0.1712699608609477 HCNGVDWR ddPTM_BT-474_Trastuzumab_2h_R1 5 HCNGVDWR 8 0 O15371-2;O15371;O15371-3 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ;;;; 116.37 0.0022841 2416910000.0 1588010.0 1867110.0 1747270.0 1783590.0 1695020.0 1851490.0 1717820.0 1529140.0 2081060.0 1770050.0 False True 1579460.3306044957 1929255.627658172 1993270.428456906 2009392.3111243993 1910870.7498293435 1723500.854238654 1634722.4838903355 1643252.1916155852 1568210.6477753182 1657083.893583954 0.9531565279947454 1.1642474078277127 1.2028784035465128 1.212607472020303 1.153152690233744 1.0400806265222051 0.9865055657228946 0.9916529862960326 0.9463676847305419 1.0 20.66021521340056 2.560082216191457 2.8806532417277273 0.9824316425685635 1.1466648208671346 0.5341275410431234 0.06872726132776949 0.21023386000966826 3.4142476913268864 0.025273311589409625 0.02276882797820025 363.14679550207074 -2.560082216191457 0.1642331782985711 HCNNGIPEDSKVEGPAFTDAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 HCNNGIPEDSKVEGPAFTDAIR 22 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 59.918 0.035576 725670000.0 382360.0 303020.0 287640.0 260540.0 248100.0 347520.0 376050.0 298490.0 486720.0 349800.0 False True 380301.4162441893 313105.8375205417 328137.21178830083 293524.33728623204 279694.06439608993 323496.76037408644 357859.0248494952 320764.8395015083 366774.37771385914 327475.46452115325 1.161312701091302 0.956119988953605 1.0020207537322383 0.8963246688280424 0.8540916639512793 0.9878503748276696 1.092781180943647 0.9795080067159917 1.120005672028499 1.0 18.3210272939429 2.4610237860513102 23.011082586559315 1.0407923664900203 0.9653008485675744 0.14331396638480476 0.08448423323941122 185.26772638573894 264832.6243370182 0.02956540120835376 0.02474661715272901 289.08382075245936 -2.4610237860513102 -0.0754915179224459 HCPYLDTINR ddPTM_BT-474_Trastuzumab_2h_R1 2 HCPYLDTINR 10 0 Q53GS9;B9A018;Q53GS9-3;F8WC91;A0A087X1B2;C9JIU2 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 0 ; 182.71 1.7481999999999996e-06 853160000.0 458300.0 510070.0 549570.0 514610.0 431110.0 560410.0 619540.0 475440.0 701920.0 617340.0 False True 455832.5637219168 527047.3716061737 626944.6790519279 579759.5732358487 486009.30311083526 521670.175763242 589570.4833273668 510919.74703540205 528941.2212461212 577940.8326686353 0.7887183911493415 0.9119400149882789 1.0847904207719983 1.0031469321155513 0.8409326277686467 0.902635955577729 1.020122562728492 0.8840346937873136 0.9152169068998657 1.0 19.14056227722362 -1.0183158895004585 4.891600965651484 1.00000107874417 0.9316203347074086 0.06202971300651994 0.08295533395309689 9.857595171750474e-07 1.9779903997661508e-07 0.08111233476288694 0.019118059101107424 0.09587030532443444 1.0183158895004585 -0.06838074403676142 HCQLEPDHEGVPEETDDFGEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 HCQLEPDHEGVPEETDDFGEFR 22 0 E9PFH4;C9J7E5;Q9Y5L0-5;Q9Y5L0-3;Q9Y5L0;Q9Y5L0-1 E9PFH4 TNPO3 Transportin-3 0 ;; 211.06 2.1644000000000003e-23 846140000.0 362877.0 358633.0 336307.0 375317.0 353102.0 340268.0 352667.0 238375.0 417790.0 320631.0 False True 360923.3105514248 370569.8826067738 383656.10236715345 422832.09371788095 398067.44670047617 316746.0740647149 335607.1498912304 256163.75294372335 314831.2525991809 300168.05507399 1.2024041347852918 1.2345413722170737 1.278137682814329 1.4086512091156895 1.3261486023299662 1.0552291248535373 1.1180641784433216 0.8534011151872246 1.048849960138418 1.0 18.19541092295235 2.4873724576669476 2.01633375200029 0.9731677562327118 1.292187581185728 0.7266826335336836 0.08346451868318563 0.16564417179230867 1.3625766786635098 0.0354162913478791 0.02909228887067683 307.16551580934885 -2.4873724576669476 0.3190198249530162 HCSQVDSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 HCSQVDSVR 9 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;;;; 167.09 6.0249e-05 1248655000.0 131466.0 290408.0 357037.0 357825.0 332182.0 277220.0 324481.0 313189.0 234716.0 279864.0 False True 130758.20166324568 300074.0547246565 407304.70617876295 403125.60831137607 374483.4087030303 258056.43390568675 308784.61439220625 336560.7535215175 176873.38683326365 262002.83991637497 0.49907169595940476 1.1453084051319176 1.5545812644960828 1.5386306821713998 1.4293104945830222 0.9849375449062009 1.1785544557103385 1.284569104781229 0.675081945255698 1.0 17.999222924028032 1.2480013971348916 24.986656327487516 0.8375409457469503 1.2247608022007688 0.18818654938595625 0.2996810088274966 275.0973072057839 728105.7540984683 0.2114555662204659 0.07495779184118716 17.701146528059965 -1.2480013971348916 0.3872198564538185 HCSYACK ddPTM_BT-474_Trastuzumab_2h_R1 1 HCSYACK 7 0 V9GY73;Q8NI51-11;Q8NI51-6;Q8NI51-5;Q8NI51-10;Q8NI51-2;Q8NI51-8;Q8NI51;Q8NI51-3;Q8NI51-7 V9GY73 CTCFL Transcriptional repressor CTCFL 0 80.377 0.094703 0.0 113430.0 432040.0 338610.0 464860.0 338550.0 167430.0 200590.0 146260.0 78442.0 226440.0 False True 112819.30548325786 446420.19022630487 386283.3447491187 523711.2283368306 381662.335756937 155855.95818782607 190886.69537178663 157174.6638932313 59111.02016894838 211988.40533496227 0.5321956420446317 2.1058707881731435 1.8221909077468341 2.4704710972721173 1.8003925033252335 0.7352098240540963 0.9004581881266908 0.7414304742039078 0.27884081714538694 1.0 17.693625833455485 2.739203188280991 8.758973861026899 0.7311755176347374 1.8112910465021195 0.5091192228831305 0.4963028401305457 0.08504274503210921 101.88034484404737 0.15420556629897206 0.15443945813670068 548.5335408692778 -2.739203188280991 1.080115528867382 HCVTFVLHEEDHTLGNSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HCVTFVLHEEDHTLGNSLR 19 0 A0A0R4J2F3;P0DPB6 A0A0R4J2F3 0 ; 253.48 2.4559e-31 810430000.0 48000.0 78686.0 67444.0 74299.0 70939.0 57052.0 64752.0 30760.0 53343.0 54224.0 False True 47741.57333330134 81305.01594330852 76939.52896624297 83705.245781952 79972.66116160498 53108.12952596221 61619.69838333878 33055.467396115084 40197.332409579205 50763.377896497994 0.9404727445569552 1.6016470792996125 1.5156503005595061 1.6489297846297688 1.5754007017551532 1.0461898267338505 1.2138612704019787 0.6511676087338443 0.7918569266910879 1.0 15.631500451730517 2.269500406999379 1.5813526848281323 0.8031515579847799 1.4699453127658269 0.560827821983171 0.22979560358187828 0.2561658799392367 1.2756864005156991 0.12218371464872463 0.0764287390629412 185.99463062717476 -2.269500406999379 0.666793754781047 HDAATCFVDAGNAFK ddPTM_BT-474_Trastuzumab_2h_R1 3 HDAATCFVDAGNAFK 15 0 P54920;M0R2M1;M0R058;M0R0I4 P54920 NAPA Alpha-soluble NSF attachment protein 0 ;; 228.38 6.042899999999998e-13 1985280000.0 2309860.0 2086300.0 1927450.0 1817700.0 1835800.0 2499110.0 2215020.0 2028970.0 3072370.0 2127070.0 False True 2297423.970409573 2155741.23430502 2198818.206304268 2047820.6336270222 2069578.2483609072 2326352.4079721565 2107871.020401886 2180382.0443009003 2315225.581148772 1991318.5715237549 1.1537199538352052 1.0825697430499275 1.1042021290554904 1.0283741953252774 1.0393004303561877 1.1682472313769636 1.0585302876922127 1.09494386055591 1.1626595634957413 1.0 20.925292611473477 4.739752162657338 23.091603883600353 1.0847576861184913 1.1537200050054268 0.14596331821503372 0.05161689689623134 69.2061981875915 1340660.3935924766 0.011697262036118924 0.07136538276600139 54922.735871649325 -4.739752162657338 0.06896231888693549 HDADGQATLLNLLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 HDADGQATLLNLLLR 15 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;; 192.65 1.2538e-07 252925000.0 210275.0 233413.0 217923.0 218134.0 222987.0 217489.0 227578.0 188991.0 271568.0 224398.0 False True 209142.9027637487 241182.010603862 248604.6641793278 245749.74203421682 251383.0727025024 202454.49734403696 216569.18270761461 203094.46809685274 204643.7052247641 210076.72752320656 0.9955548395556822 1.1480662967639732 1.1833993565606413 1.1698094545340325 1.1966250410804444 0.9637169225309472 1.0309051614662592 0.9667632892578141 0.9741379144539355 1.0 17.680556822328167 2.7318708708112442 24.993582786407853 0.9872130964165714 1.1434244494211194 0.654802762542376 0.05497741900930052 324.05533854200104 1210702.219165005 0.017858927755633056 0.017207571592376753 539.3502331573853 -2.7318708708112442 0.15621135300454803 HDDFFPYADGPHQFWTGYFSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDFFPYADGPHQFWTGYFSSR 22 0 O00754;O00754-2 O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide 0 ; 164.65 7.9352e-12 424680000.0 331560.0 382460.0 379500.0 399030.0 375950.0 381950.0 351360.0 296620.0 361170.0 293090.0 False True 329774.91779977904 395189.94989804795 432930.3013268667 449547.15708653274 423825.0040697697 355546.69551358855 334363.3744744552 318755.2906058406 272164.4929300512 274384.74527302664 1.2018704519146515 1.4402766797578854 1.5778220501875178 1.6383824714424655 1.5446376351864695 1.2957961462464018 1.2185931624651611 1.1617092279990386 0.9919082515291942 1.0 18.06584074993179 2.040721552287848 1.180738600710919 1.0200369169115433 1.4883722353708637 0.7148616368821615 0.11832619576506187 0.27618575257637185 0.7148285331690167 0.09409597435544782 0.04511815454538346 109.8301438169232 -2.040721552287848 0.4683353184593204 HDDGTQS(ph)DSENAGAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDGTQSDSENAGAHR 16 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 HDDGTQS(1)DSENAGAHR;HDDGTQS(1)DSENAGAHR 233.89 7.4599e-20 398920000.0 238960.0 177282.0 146569.0 163250.0 168426.0 196627.0 173480.0 93514.0 211509.0 132699.0 True False 237673.4659109516 183182.72420076776 167204.641199414 183917.4332616005 189874.05276088585 183034.63830017127 165088.10964204368 100492.48953447027 159385.44102539564 124230.03621067046 1.913172314527082 1.474544560947602 1.3459276540487102 1.4804586625871348 1.52840696624201 1.4733525311848048 1.3288904573937796 0.8089226454386133 1.2829863524720249 1.0 16.922654503496364 1.9767771206326776 4.324444530364873 1.0164407219569955 1.5166169502782145 0.6219747505529591 0.17553465745848507 0.1327780126199057 5.7411837698828405 0.07711185288263171 0.047737425052001854 94.79318610426982 -1.9767771206326776 0.500176228321219 HDDGTQS(ph)DSENAGAHRR ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDGTQSDSENAGAHRR 17 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 HDDGTQS(0.989)DS(0.011)ENAGAHRR;HDDGTQS(0.999)DSENAGAHRR 136.46 4.8047e-06 267340000.0 77455.0 65609.0 56344.0 67972.0 69742.0 64984.0 72837.0 35120.0 85387.0 59687.0 True False 77037.9908860594 67792.7559035219 64276.74544917263 76577.2482306739 78623.23030677979 60491.8090358818 69313.59604563947 37740.83273574647 64344.5179771805 55877.724559388385 1.3786887618192345 1.2132340111929556 1.1503107178399423 1.370443210322308 1.4070585537751605 1.0825746666113691 1.2404512995508803 0.6754182106258546 1.1515235898482834 1.0 15.769985652377617 1.7710747094310837 24.99999998285945 0.9114254892209471 1.2596887968499184 0.4978444781440351 0.14669643628330575 21.887594251455685 16837.62527230641 0.065588046785808 0.03638406352042286 59.03026181410687 -1.7710747094310837 0.3482633076289713 HDDPALTLVAGLTSNKPTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDPALTLVAGLTSNKPTDK 20 1 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;J3KNK7;Q6XYB5;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ; 242.26 5.3164999999999995e-30 981750000.0 1599250.0 1327740.0 1183040.0 1160420.0 1213300.0 1645380.0 1604930.0 1387350.0 2278100.0 1416580.0 False True 1590639.815693377 1371933.0232642223 1349601.74883198 1307329.0530194584 1367806.5632074806 1531638.7534079037 1527293.4044720137 1490881.1018205546 1716692.7799760487 1326172.6516048447 1.1994213677747705 1.0345055914130046 1.0176667021437842 0.9857909914198705 1.0313940357254792 1.154931638466845 1.1516550297005343 1.124198346283488 1.2944715591130784 1.0 20.338837178409346 2.7345239727162607 23.59310335126536 1.1507637942856137 1.04690551627534 0.22027534993621323 0.08505931848140542 217.94173153320529 1273803.0853541882 0.02620080058224673 0.025583012460686037 542.6552046458443 -2.7345239727162607 -0.1038582780102737 HDDSSDNFCEADDIQSPEAEYVDLLLNPER ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDSSDNFCEADDIQSPEAEYVDLLLNPER 30 0 Q96HE7;G3V3E6;G3V5B3 Q96HE7 ERO1L ERO1-like protein alpha 0 ; 234.48 2.1139e-45 132672000.0 44464.0 55549.0 42762.0 51925.0 40932.0 55802.0 53624.0 41124.0 58985.0 49608.0 False True 44224.61076441484 57397.91488492037 48782.517906032925 58498.6996760098 46144.4475770284 51944.53908377871 51030.00225642696 44192.881703440726 44448.93710850586 46441.97496845442 0.9522551699072721 1.2359059864251625 1.0503971448063592 1.2596083546348937 0.9935935672066462 1.1184825606374813 1.0987905292806548 0.9515719719813512 0.957085419788837 1.0 15.503141704393126 1.7631646117326116 5.736636461838451 0.9662706048422951 1.1076140495086608 0.30660478070091346 0.09035468911505742 0.18804497007287113 14.971154908505488 0.040822761742641434 0.021924076692178118 57.96483603740604 -1.7631646117326116 0.14134344466636573 HDDVMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDDVMAK 7 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 84.244 0.021688 155880000.0 509600.0 498970.0 423550.0 380050.0 398780.0 464630.0 507710.0 444690.0 611340.0 466260.0 False True 506856.3702218827 515577.91481626494 483182.158437404 428164.2910325961 449562.2692457578 432511.2217213733 483150.12765945337 477875.025890066 460683.4485363055 436502.8876147311 1.1611752971248324 1.181155794028395 1.1069392028028764 0.980896812326486 1.0299182021507112 0.9908553505449409 1.1068658223537213 1.094780903973884 1.0553961075806602 1.0 18.735631672240377 4.018542978869474 4.625405861572999 1.0455396181988161 1.168129357137593 0.6416107254836687 0.04012467878924899 0.134031562305997 7.327061886274936 0.011409405655256787 0.024651919023365502 10436.21407006237 -4.018542978869474 0.1225897389387769 HDDYFQER ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDYFQER 8 0 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 ; 112.11 0.0031046 2223100000.0 2431100.0 2594900.0 2146300.0 2064610.0 2038950.0 2170410.0 2344300.0 2234600.0 2977800.0 2368700.0 False True 2418011.227720604 2681269.677849828 2448480.384025971 2325989.414310765 2298598.1966965203 2020374.6652955844 2230897.252904329 2401357.19906888 2243961.0904756915 2217527.538053904 1.0904086583937729 1.2091257636434596 1.1041488062758176 1.048911174447938 1.0365590312866029 0.9110933824382895 1.0060291088254796 1.0828984794372856 1.0119202814703196 1.0 21.080520589867252 3.7317896041183447 2.1658528384973565 1.0134812546914331 1.1507132329412018 0.5784781343382691 0.04872752323889268 0.23804313697489504 2.175327250111757 0.014689745380881403 0.029506469786481044 5392.493175093143 -3.7317896041183447 0.13723197824976863 HDDYLVMLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HDDYLVMLK 9 0 Q9Y224;G3V4C6;H0YJB9 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 ; 92.062 0.01033 792750000.0 1815080.0 1838840.0 1792440.0 1626380.0 1499190.0 1908320.0 1978430.0 1737750.0 2687500.0 1848560.0 False True 1805307.8109543477 1900044.677797746 2044799.9718322284 1832279.5412435033 1690102.9601046888 1776402.3301020875 1882725.7825634542 1867429.7291157036 2025201.6356549915 1730583.3181681617 1.043178789487745 1.0979215261412323 1.181566903116036 1.0587641299946124 0.9766088360852099 1.0264760508511233 1.087913978366749 1.0790753091809502 1.1702422035355604 1.0 20.722826970414026 3.574400653410361 24.509312038177747 1.0588261080311847 1.1088549454404928 0.13344120342836563 0.05886968253913021 85.94733079115217 21643.573739799922 0.0162667527218393 0.02520033262729536 3753.1908891742796 -3.574400653410361 0.05002883740930808 HDDYYR ddPTM_BT-474_Trastuzumab_2h_R1 1 HDDYYR 6 0 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 102.98 0.035077 312160000.0 140340.0 154910.0 124830.0 132520.0 132670.0 142190.0 137780.0 130880.0 189140.0 142660.0 False True 139584.42503323997 160066.08570492733 142404.9789581894 149297.0184124182 149564.7381033018 132360.73997925676 131115.05502928738 140646.93019517369 142528.98134615258 133555.31666262928 1.045143155070649 1.198500289653509 1.0662621490233521 1.1178665300877062 1.1198710904269988 0.9910555662385938 0.9817284575835631 1.053098698799527 1.0671906211430837 1.0 17.027077883357304 2.7475807192424675 24.79437401858123 1.0213644144709373 1.112531038707046 0.5045640492929913 0.044953503044961075 488.2704820928647 1342152.2409816438 0.013446927990870524 0.014080718190836053 559.2174557037733 -2.7475807192424675 0.09116662423610866 HDEESHSLS(ph)PPGENTVMADSFQIK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDEESHSLSPPGENTVMADSFQIK 24 0 Q96JQ2 Q96JQ2 CLMN Calmin 1 HDEES(0.19)HS(0.19)LS(0.584)PPGENT(0.035)VMADSFQIK 144.7 3.7425e-07 167130000.0 100750.0 91839.0 89457.0 90442.0 96431.0 127220.0 91603.0 48851.0 108010.0 82727.0 True False 100207.57319437718 94895.80559715204 102051.76802581691 101891.94792677295 108710.91625868333 118425.58084366725 87171.81293255772 52496.50968035168 81392.38275984945 77447.29203385192 1.293880916463507 1.225295334479525 1.317693173587147 1.3156295753018241 1.403676144172558 1.5291119641975846 1.125563084819741 0.6778353161451488 1.0509390402478263 1.0 16.240927175212033 1.9924942642054888 7.608358876525393 0.8797625272894534 1.341062316011833 0.7327855490497039 0.11861501469731973 0.0623363407749563 25.569955655472633 0.0474052265657198 0.032309301383414556 98.28658920521922 -1.9924942642054888 0.46129978872237953 HDELADSLPCAEGEFIFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HDELADSLPCAEGEFIFLR 19 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 216.93 3.7163000000000005e-19 550840000.0 391520.0 419500.0 331790.0 356860.0 368280.0 409840.0 409280.0 340760.0 501690.0 363660.0 False True 389412.0998219609 433462.8039068946 378503.14802962163 402038.43941031944 415178.2750334221 381508.7254595869 389481.5627985685 366189.24154421943 378055.2218015824 340450.90745501016 1.143812782679749 1.2732020811669469 1.1117701252702343 1.1808998907234458 1.219495280940871 1.120598350909088 1.1440168149648349 1.0756007210602325 1.1104544400473997 1.0 18.377087253063497 1.38017626297626 0.46730166091125774 0.9985023273445292 1.1965407247080047 0.603272879446294 0.04520937402007478 0.5711297075252704 0.3396981079918265 0.047870451680591806 0.029436846694619653 23.998067081491225 -1.38017626297626 0.1980383973634755 HDELTYF ddPTM_BT-474_Trastuzumab_2h_R1 2 HDELTYF 7 0 P04080;A0A1W2PQG6 P04080 CSTB Cystatin-B 0 ; 116.35 0.012736 279030000.0 812750.0 854030.0 748590.0 787330.0 677330.0 899360.0 729980.0 689730.0 959670.0 754000.0 False True 808374.2443050145 882455.8722779625 853984.9651390769 887005.897273237 763583.9606505577 837189.3600657176 694668.0786055966 741201.1549779737 723172.1874191719 705879.0744681234 1.1452021649942248 1.2501516253940363 1.2098176529493394 1.2565975240753409 1.081748968441818 1.1860237685846347 0.9841176820959394 1.050039846465863 1.0244986904649056 1.0 19.429061528177275 2.5501294119077107 1.1356314760050623 1.0138220561288551 1.213760252349781 0.7015456885706977 0.053801930149353416 0.2486965396512149 0.6537061389890394 0.028092915143273865 0.02156202349155077 354.9191329660079 -2.5501294119077107 0.1999381962209259 HDENILESEPIVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 HDENILESEPIVYR 14 0 Q96F86;H3BSQ0;H3BPN4 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 125.97 0.00040834 0.0 95411.0 102310.0 99476.0 101010.0 97192.0 100870.0 89443.0 89918.0 118790.0 102590.0 False True 94897.31777715852 105715.32650229888 113481.35613910788 113797.85564321141 109568.82509788284 93897.0943224393 85116.30038455916 96628.13775435233 89515.79620444882 96042.61836828219 0.9880750794742816 1.1007126658805366 1.1815729107254827 1.1848683175925663 1.1408354640825542 0.9776607085240459 0.8862346927920551 1.0060964538037158 0.9320424382974879 1.0 16.5513871152236 2.6974262341725677 5.615010572325912 0.9571205408632348 1.1254250192446786 0.6328661163217675 0.06044404030708519 0.13113030314231097 11.004064049628138 0.020419282308755605 0.01952020665184603 498.22582408346796 -2.6974262341725677 0.1683044783814438 HDGGS(ph)PSIK ddPTM_BT-474_Trastuzumab_2h_R1 4 HDGGSPSIK 9 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 HDGGS(1)PSIK;HDGGS(0.997)PS(0.003)IK;HDGGS(1)PSIK;HDGGS(1)PSIK 145.41 0.00010201 1488300000.0 1621280.0 1268190.0 1087990.0 1096823.0 1025790.0 1402350.0 1644190.0 1402300.0 2459170.0 1663360.0 True False 1612551.2086211403 1310400.937512956 1241169.5350213908 1235680.6793402042 1156418.2761663224 1305408.845276818 1564654.248284248 1506946.7467351155 1853140.5046897419 1557202.9407258567 1.035543387729209 0.8415094161729112 0.7970505979412332 0.7935257807593262 0.7426252840411943 0.8383036090776516 1.004785058750864 0.967726625299516 1.1900443135728604 1.0 20.570525543606085 1.9702008529593849 1.7055979885972814 1.0678330191662588 0.8325004202873857 0.5323872706314312 0.09111460813992295 0.2873700526023282 1.5560549750452837 0.059023511334106854 0.028485397524254694 93.3686013029092 -1.9702008529593849 -0.23533259887887314 HDGGSPSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDGGSPSIK 9 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 76.035 0.085084 171430000.0 630690.0 459660.0 463240.0 434360.0 420560.0 543890.0 608140.0 527300.0 899140.0 498280.0 False True 627294.4351162469 474959.5052296626 528460.1654457386 489349.9314640657 474115.8231455847 506292.16447934526 578721.9448795959 566649.8035751461 677558.9948587257 466479.34380102984 1.3447421487194735 1.0181790716809314 1.1328693809669432 1.0490280823083797 1.016370455511128 1.085347446156795 1.2406164443723826 1.2147371820537516 1.4524951723215613 1.0 18.831453672865166 2.2352441958653624 24.748156449766235 1.2414784311181728 1.0980025699895808 0.1528048245615331 0.1346276711461976 116.04178545690283 865925.4139678371 0.04650876249729647 0.03576965180466049 171.887460732646 -2.2352441958653624 -0.143475861128592 HDGITVAVHK ddPTM_BT-474_Trastuzumab_2h_R1 3 HDGITVAVHK 10 0 R4GMU8;E9PLX3;A0A0C4DGV4;O43504 R4GMU8 LAMTOR5 Ragulator complex protein LAMTOR5 0 ;; 162.36 3.928e-06 386386000.0 650390.0 672480.0 635720.0 587790.0 675660.0 796500.0 691610.0 584810.0 910930.0 613840.0 False True 646888.3725051216 694863.0902772548 725223.8502227031 662204.153732534 761701.2960494232 741439.8297593234 658154.182093231 628451.4918050094 686443.5073366321 574664.2056651354 1.125680642935454 1.209163687988879 1.2619958631028791 1.1523323485340051 1.3254719687435637 1.2902140457854971 1.1452848038994556 1.0935977665036902 1.1945123788284666 1.0 19.132359664696548 2.0579649166641825 6.340873038149919 1.1094384008425178 1.2289929710093541 0.4109549825143274 0.07112465216926023 0.20650246487483254 16.85504240975495 0.026803732481931325 0.01956946476470333 114.27860141027539 -2.0579649166641825 0.11955457016683635 HDGKDEIIK ddPTM_BT-474_Trastuzumab_2h_R1 2 HDGKDEIIK 9 1 Q7L576;Q7L576-2;Q7L576-3;H0YL50 Q7L576 CYFIP1 Cytoplasmic FMR1-interacting protein 1 0 ; 103.7 0.0020307000000000003 390090000.0 785260.0 629300.0 589740.0 552590.0 516930.0 810660.0 786660.0 682470.0 1137250.0 759340.0 False True 781032.2474105884 650245.8700801162 672770.2658880284 622547.8373416716 582757.9714158436 754620.9822883777 748606.2504669712 733399.3769124408 856989.9758692604 710878.2710963191 1.0986863421863742 0.9147077587240142 0.9463930650890197 0.8757446424428982 0.8197718162310856 1.0615333355520888 1.0530723485365052 1.0316806782986763 1.2055368840400864 1.0 19.439243012170436 2.625566133893293 9.222588639938202 1.0681112308472018 0.9280244997151991 0.4120006007869481 0.08317553934736698 0.35898663291717386 27.0455320822389 0.02687589610254171 0.025322791795797762 422.2465734065085 -2.625566133893293 -0.14008673113200276 HDGTGGQSIYGDKFEDENFDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDGTGGQSIYGDKFEDENFDVK 22 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 0 143.74 6.329100000000001e-08 336570000.0 216490.0 169000.0 141620.0 140190.0 141310.0 220070.0 225090.0 182760.0 327220.0 192680.0 False True 215324.44189429996 174625.06283734256 161558.86501689322 157938.03962599553 159304.99089000974 204857.0788890574 214201.5367726976 196398.4792364759 246581.01552335807 180382.9974383528 1.19370697323005 0.968079393940784 0.8956435324349633 0.8755705463868456 0.8831485957785649 1.1356784275583889 1.187481857018717 1.0887859832997648 1.36698590790204 1.0 17.460703833720864 2.6544943007456427 6.152055920644742 1.1597221395736341 0.9552452312217025 0.38690996726266913 0.1211188519578083 0.24153016220908513 14.34846773808885 0.03917405589234678 0.0369126451882559 451.330102488978 -2.6544943007456427 -0.20447690835193166 HDGYGSHGPLLPLPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 HDGYGSHGPLLPLPSR 16 0 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 57.475 0.068239 278000000.0 396130.0 460940.0 420780.0 437950.0 399020.0 439580.0 481340.0 323470.0 577620.0 397350.0 False True 393997.2800941806 476282.1092558854 480022.1665146755 493394.42509597517 449832.8318231672 409192.8692600169 458055.7453026356 347608.97394737834 435273.2907114549 371990.7828115503 1.0591587165582508 1.2803599746641272 1.290414141142453 1.3263619635057668 1.2092580047905421 1.1000080866716342 1.2313631586261253 0.934455879041165 1.1701184836398577 1.0 18.504907349112028 2.22169420698585 1.229604506831776 1.0357881292369524 1.2425803116336105 0.3660481177163434 0.09977448720272566 0.4523471243706248 1.316894877558896 0.0636858919895747 0.03576156919214541 166.60736929149945 -2.22169420698585 0.2067921823966581 HDIAFVEFDNEVQAGAAR ddPTM_BT-474_Trastuzumab_2h_R1 3 HDIAFVEFDNEVQAGAAR 18 0 P09012;M0R268 P09012 SNRPA U1 small nuclear ribonucleoprotein A 0 ;; 148.52 6.878e-08 1122840000.0 287561.0 730360.0 713540.0 797990.0 825270.0 628910.0 543820.0 456570.0 330865.0 695400.0 False True 286012.8035270303 754669.591088056 814000.2297991387 899015.4521802429 930363.2427414792 585434.9319948978 517513.349005858 490641.5718154832 249327.75411385574 651018.9766381064 0.43933097772973423 1.159212892664368 1.250347929952327 1.380935862765172 1.4290877472511172 0.8992593964282151 0.7949282088186155 0.7536517204908221 0.3829807779204784 1.0 19.312340071748874 2.4507439430132747 3.6336105039335167 0.7223775815939418 1.1557033195299735 0.2901110246470199 0.29176628777547003 0.28254722311049685 8.024105546057552 0.10662536951235306 0.09078467935508666 282.3214936350763 -2.4507439430132747 0.4333257379360317 HDIAFVEFENDGQAGAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HDIAFVEFENDGQAGAAR 18 0 P08579 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B 0 ; 263.15 7.038200000000001e-31 501280000.0 204315.0 235644.0 206445.0 194846.0 206623.0 236123.0 201504.0 184243.0 231385.0 217203.0 False True 203214.99074153046 243487.26809019383 235510.66154789203 219513.48362198973 232935.21429952938 219800.37278375446 191756.4816999672 197992.14822699697 174363.26715015044 203340.91858315596 0.9993807058485673 1.1974336979825342 1.1582059488512653 1.0795342381234498 1.1455402873291873 1.0809451157951144 0.9430294848478747 0.973695553293315 0.8574922763459675 1.0 17.633541034415078 2.310055745390984 3.520784339550762 0.9431161046861964 1.120558270359776 0.6514459514819773 0.060025159383658246 0.13697114209812106 3.4017425955848375 0.02166475476311983 0.01714409347119964 204.20000359227882 -2.310055745390984 0.17744216567357962 HDKYER ddPTM_BT-474_Trastuzumab_2h_R1 2 HDKYER 6 1 C4P0D6;C4P0D8;Q99598;C4P0D4;Q5VVQ1 C4P0D6 DISC1;TSNAX Translin-associated protein X 0 ; 81.958 0.055182 67877000.0 107068.0 109181.0 103715.0 95774.0 105924.0 88015.0 115400.0 93919.0 146786.0 116135.0 False True 106491.55778437298 112815.02358369165 118317.17049305934 107898.97858007053 119412.79353926411 81930.73021502432 109817.66112918971 100927.71269101863 110612.55713162918 108723.16487182412 0.9794744101674926 1.0376355739523542 1.0882425160502436 0.9924194048920003 1.098319697371229 0.7535719762353688 1.0100668174869258 0.9282999884155718 1.0173780101235326 1.0 16.730299832329045 HDLDLICR ddPTM_BT-474_Trastuzumab_2h_R1 8 HDLDLICR 8 0 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;P62140;P62136;P62136-2;P62136-3;E9PMD7 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 ;;;;;;; 163.2 0.00033727 12986110000.0 6666910.0 7358900.0 6604680.0 6627600.0 5587450.0 6615574.0 6366340.0 5525293.0 8255880.0 6192099.0 False True 6631016.09732333 7603836.537951006 7534561.535092312 7466653.480456861 6298978.638089203 6158254.940766112 6058375.812419465 5937618.420529357 6221328.997124216 5796913.940497333 1.1438872761244472 1.3117042302164403 1.2997539056869112 1.2880393873531053 1.0866089617243475 1.0623333387346747 1.045103631795455 1.0242723078997362 1.0732139653931918 1.0 22.466853637213756 3.158363717505883 4.2503877410089235 1.0442441518461596 1.2676624024916987 0.8277815435348126 0.04765225488135089 0.08096394176898881 2.754257633793788 0.01386096235269207 0.01705042375883995 1440.0040631273832 -3.158363717505883 0.2234182506455391 HDLINQLQHNHALVTLVAENLATYMESMR ddPTM_BT-474_Trastuzumab_2h_R1 1 HDLINQLQHNHALVTLVAENLATYMESMR 29 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 138.02 7.4789e-07 129520000.0 35643.0 38901.0 38743.0 34326.0 35225.0 30586.0 35546.0 7685.9 36865.0 17342.0 False True 35451.10204830956 40195.796268848906 44197.67763980714 38671.668080475945 39710.69495506755 28471.66181169949 33826.50418109338 8259.460886209397 27780.114715691612 16235.21871276683 2.183592514243865 2.4758395300976317 2.7223333680778548 2.381961633203367 2.4459599625744737 1.7536974595427122 2.083526238823833 0.508737272489864 1.7111019695623975 1.0 13.9868391995722 2.1893671146733564 1.4321338508975 1.0457925931245482 2.452866133332712 0.6864429952594593 0.3734516826936896 0.21174577769755867 0.8404417030016441 0.2168506653616448 0.12180738152547095 154.6561215094906 -2.1893671146733564 1.407073540208164 HDMAAAGFTEALTFALCSQEDIADK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDMAAAGFTEALTFALCSQEDIADK 25 0 Q9NSD9;Q9NSD9-2 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit 0 192.47 5.1062000000000006e-18 28316000.0 15653.0 14920.0 12576.0 12870.0 13103.0 15301.0 17764.0 17222.0 26939.0 18761.0 False True 15568.725987211783 15416.603180669546 14346.591487448437 14499.340680409177 14771.58938243435 14243.277884679717 16904.687454930037 18507.19309154402 20300.244414105953 17563.656917899796 0.8864171089191054 0.8777558826577793 0.8168339631382389 0.8255308531808284 0.8410315375370409 0.8109517255580099 0.9624810786244533 1.0537209408071864 1.155809664752515 1.0 14.100305638320418 1.9366161853889743 2.419298509845725 1.0802306590849515 0.8426591508326737 0.8456784762331668 0.04342705325307764 0.1010797307637848 1.081965166843627 0.02362972102828423 0.012274282353082455 86.42038273980538 -1.9366161853889743 -0.2375715082522778 HDMLAWINESLQLNLTK ddPTM_BT-474_Trastuzumab_2h_R1 3 HDMLAWINESLQLNLTK 17 0 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 ;; 307.22 1.7017e-47 862600000.0 1434580.0 1365788.0 1252379.0 1156811.0 1227984.0 1525959.0 1576949.0 1336758.0 1858432.0 1416564.0 False True 1426856.3806768225 1411247.427943718 1428703.07732659 1303263.153989497 1384360.4835685932 1420473.0460511083 1500665.952339813 1436513.669879586 1400446.3353129562 1326157.672738545 1.0759326813155876 1.0641626233096857 1.0773251979730933 0.9827362015696292 1.0438883038016573 1.0711192758232133 1.131589390302968 1.0832148389362732 1.0560179713932532 1.0 20.338820883352934 2.6374275029126766 5.172893659169455 1.080107120419751 1.0476890277006277 0.019639294341901592 0.039832897142466205 0.49064160053482336 20.126253315800923 0.013114875012644227 0.01233622961183273 433.9378200488756 -2.6374275029126766 -0.032418092719123326 HDNLLHGTK ddPTM_BT-474_Trastuzumab_2h_R1 3 HDNLLHGTK 9 0 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 0 ;; 184.71 2.5271e-05 979600000.0 741250.0 745810.0 704170.0 639520.0 605660.0 833100.0 882320.0 433160.0 1065740.0 700280.0 False True 737259.1923606177 770633.8349983337 803311.015244638 720483.1664285371 682787.2109719301 775509.7579064561 839638.8108102833 465484.59874191217 803102.657184353 655587.5308601293 1.124577814030928 1.1754858027687989 1.2253299177162442 1.0989885141397746 1.0414890137951753 1.1829232885027408 1.2807424962898228 0.7100266201390338 1.2250120988888917 1.0 19.32242888937246 1.7612048205066473 24.999999999599538 0.9510629651004342 1.1581859523933222 0.28082662942231396 0.1319974247773041 12.836830248111538 14183.322672677448 0.057939735352514746 0.032131628249574634 57.70385402097986 -1.7612048205066473 0.20712298729288803 HDPDLTLIR ddPTM_BT-474_Trastuzumab_2h_R1 4 HDPDLTLIR 9 0 C9JQB7;P46091 C9JQB7 GPR1 G-protein coupled receptor 1 0 ;;; 99.139 0.0055396 2871620000.0 2740880.0 2833090.0 2593790.0 2804300.0 2531510.0 3431290.0 3112760.0 2424570.0 3572820.0 3627190.0 False True 2726123.4066203977 2927387.688010927 2958973.0863731606 3159324.092468642 2853882.79306467 3194092.998687844 2962183.906902053 2605503.725116994 2692346.3843352045 3395699.628806407 0.802816416238392 0.8620867591400914 0.8713883469761557 0.930389739324249 0.8404402936156675 0.9406288387794098 0.8723339019073558 0.7672951114444808 0.7928694168045622 1.0 21.695277418322053 -0.46894186232262897 7.573197172386753 0.9999999986511309 0.8531227536996076 0.40783382067023877 0.053008467875416555 0.0 0.0 0.05554309078742439 0.013091631950409025 0.33967074023277966 0.46894186232262897 -0.14687724495152332 HDPNMK ddPTM_BT-474_Trastuzumab_2h_R1 2 HDPNMK 6 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 97.071 0.041489 180345000.0 436870.0 442810.0 370030.0 343550.0 353690.0 317360.0 427700.0 389280.0 588140.0 474870.0 False True 434517.9404608198 457548.66316570196 422127.00764158275 387043.3947750249 398730.3250151266 295421.6501850835 407010.51702733507 418330.05032378715 443200.77767223306 444563.39004333847 0.9774037858098495 1.0292090473781423 0.9495316463202953 0.8706146377399493 0.8969031952366933 0.6645208687928266 0.9155286425804371 0.9409907781272904 0.9969349424589987 1.0 18.762029621232635 3.9791920633627877 3.9510964413173055 0.8905525123620686 1.002409930275912 0.18041520748778084 0.08913600991840127 0.34316826455372035 11.995538546872387 0.024111371548486995 0.05059972703028188 9532.17623916558 -3.9791920633627877 0.1118574179138434 HDS(ph)EQDNSDNNTIFVQGLGENVTIESVADYFK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDSEQDNSDNNTIFVQGLGENVTIESVADYFK 32 0 P35637-2;P35637 P35637-2 FUS RNA-binding protein FUS 1 HDS(0.333)EQDNS(0.333)DNNT(0.333)IFVQGLGENVTIESVADYFK 68.43 0.0065766 20325000.0 24360.0 19544.0 15725.0 16855.0 20579.0 22250.0 24439.0 22279.0 29051.0 21692.0 True False 24228.848466650426 20194.51022540252 17938.943315849767 18988.841271817902 23199.613668710717 20711.90987086622 23256.792203953795 23941.57211046972 21891.770313456032 20307.59798854445 1.193092776423778 0.994431258526699 0.883361159993868 0.935060920672624 1.1424105244646687 1.0199093897047717 1.1452261472318386 1.1789465265156027 1.0780088480087706 1.0 14.309731985261731 3.2314922842659652 24.998746978788095 1.1081190620344612 0.9925450517209515 0.18616216316577283 0.09132096720012138 226.78964234059254 802091.1483652041 0.027137900353898778 0.03309200711830305 1704.0890439720076 -3.2314922842659652 -0.11557401031350967 HDS(ph)PDLAPNVTYSLPR ddPTM_BT-474_Trastuzumab_2h_R1 6 HDSPDLAPNVTYSLPR 16 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR 219.85 1.2618000000000001e-14 2946040000.0 1271520.0 1272212.0 998675.0 1203118.0 1124299.0 1326067.0 1344250.0 1080026.0 1561802.0 1161968.0 True False 1264674.2775991515 1314556.8073516071 1139279.7593612897 1355432.6154415326 1267471.8134077357 1234399.109515953 1279223.491966319 1160623.0243809028 1176916.8241745997 1087810.207429146 1.1625872500203815 1.208443162579195 1.047314827145981 1.2460193939941662 1.1651589631643458 1.1347559538287888 1.1759620228142056 1.0669352212862917 1.0819137530948915 1.0 20.052995437782158 1.3481759529837993 1.0205147318232046 1.0062349807356616 1.16575465856757 0.5181825676346521 0.05103698470654439 0.36107255928122717 0.7679902657578042 0.04465283558039659 0.015643581739531964 22.293381753730138 -1.3481759529837993 0.15951967783190835 HDS(ph)PDPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HDSPDPSPPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 HDS(1)PDPS(1)PPR;HDS(1)PDPS(1)PPR 97.463 0.0081017 173350000.0 513660.0 481520.0 307030.0 422900.0 466520.0 482600.0 481110.0 394350.0 556480.0 416530.0 True False 510894.5116329908 497547.1021150136 350257.1552473997 476439.09663908626 525928.5567193223 449238.9979182037 457836.87128132134 423778.39946872485 419342.960449968 389946.6987907259 1.3101649872080963 1.2759361821961057 0.8982180291142136 1.221805693230855 1.3487190899430446 1.1520523171791188 1.1741011597254996 1.0867598078991703 1.0753853327913883 1.0 18.572917412141067 1.5063247761001177 1.2420879193656489 1.014152988369966 1.1988440677860672 0.258439318204994 0.11617972650803027 0.6451685007691214 1.9102711235065861 0.10759286800959865 0.03714071233083127 32.086679483652 -1.5063247761001177 0.1846910794161012 HDS(ph)PDPS(ph)PPRRPQHNS(ph)SGASPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HDSPDPSPPRRPQHNSSGASPR 22 2 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 3 HDS(1)PDPS(0.989)PPRRPQHNS(0.384)S(0.353)GAS(0.274)PR 56.533 0.063088 57887000.0 17890.0 37254.0 15043.0 45041.0 44833.0 46651.0 43207.0 30190.0 35767.0 35597.0 True False 17793.682227765847 38493.97686948142 17160.923643900038 50743.18598184223 50542.216803989875 43426.12617464176 41116.91234323137 32442.931101713726 26952.702103245403 33325.16898387501 0.5339412453204857 1.1551022258313959 0.5149538372094576 1.522668527394272 1.5166379749925845 1.3031029548763664 1.2338095678712548 0.9735263793384462 0.8087791577677208 1.0 15.024324570440003 3.743679405162496 24.952673799320905 1.1992248035588673 0.7767094304514356 0.37451400283771963 0.27038222635654685 502.16472094035026 2447906.1059527807 0.07313714505790134 0.12696330913989298 5542.164410596316 -3.743679405162496 -0.4225153731074317 HDS(ph)PEDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 HDSPEDVK 8 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 HDS(1)PEDVK;HDS(1)PEDVK 108.43 0.0039985 1786300000.0 2089900.0 1611190.0 1127770.0 1360860.0 1482130.0 1742370.0 1906210.0 1586920.0 2850240.0 1761200.0 True False 2078648.2106097175 1664817.4851650796 1286550.2132474345 1533144.7364678793 1670870.470227232 1621924.0629978057 1813999.3398706473 1705344.02861648 2147836.543259268 1648798.7081608188 1.2607046574705179 1.0097154230683072 0.7802955005238568 0.9298556148057954 1.0133865716640653 0.9837004692992567 1.1001945421791992 1.0342948597520043 1.3026675315964493 1.0 20.65298384895814 1.9792567024369705 1.5123828730837148 1.1295464217225617 0.9832462775320795 0.1367456575243311 0.13377706053030075 0.7545746309718815 3.2144264489683856 0.09194988013432774 0.043384822733006846 95.33595084967276 -1.9792567024369705 -0.1463001441904822 HDS(ph)PEDVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 HDSPEDVKR 9 1 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR 147.33 5.6758e-05 896590000.0 2018900.0 1469390.0 1181640.0 1361820.0 1459060.0 1858510.0 1923090.0 1538300.0 2767040.0 1749250.0 True False 2008030.4667208786 1518297.7578849862 1348004.6410010005 1534226.272369451 1644862.6424738376 1730035.578161958 1830062.789782785 1653095.7573291222 2085140.068436384 1637611.3673917283 1.2261947533492807 0.9271416821582178 0.8231529579255468 0.9368683577307222 1.0044279584439246 1.0564384277067131 1.117519593612482 1.0094554729197174 1.273281384066995 1.0 20.643161591223365 2.7484239623593205 2.4217835055159482 1.0912900864741806 0.9646031055280454 0.17366911078087766 0.11834726990519509 0.5098597856989922 5.909936968692778 0.041340109377355064 0.04139736224607087 560.3043089392621 -2.7484239623593205 -0.12668698094613517 HDSEQDNSDNNTIFVQGLGENVTIESVADYFK ddPTM_BT-474_Trastuzumab_2h_R1 3 HDSEQDNSDNNTIFVQGLGENVTIESVADYFK 32 0 P35637-2;P35637 P35637-2 FUS RNA-binding protein FUS 0 ;; 201.23 4.2893e-27 228818000.0 83621.0 177808.0 151974.0 144164.0 134581.0 138436.0 132265.0 158565.0 122779.0 190111.0 False True 83170.79382716656 183726.23179279434 173370.61821831184 162415.14761853218 151719.09262591758 128866.24516329147 125866.83664863324 170397.92547675513 92521.76060431039 177977.9532177844 0.4673095308911314 1.0322977001987206 0.9741128891743419 0.9125576774095797 0.8524600372286846 0.7240573499887544 0.7072046530089886 0.9574102993995335 0.5198495596311036 1.0 17.441339014767248 2.972975840262153 20.37356794956764 0.7878206490363203 0.8706413488946313 0.02303420015070301 0.18905729238296695 272.9136121393338 205749.8972792766 0.055401491972872585 0.05906049869988294 939.671035349791 -2.972975840262153 0.08282069985831098 HDSIPAADTFEDLS(ph)DVEGGGSEPTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HDSIPAADTFEDLSDVEGGGSEPTQR 26 0 O95671;O95671-2;O95671-3 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 HDSIPAADTFEDLS(1)DVEGGGSEPTQR 225.17 1.1959e-34 196420000.0 44397.0 65836.0 72499.0 94962.0 99565.0 97542.0 98871.0 85339.0 83526.0 99097.0 True False 44157.97148497044 68027.31146129759 82706.22902739537 106984.1794633268 112244.01258200989 90799.15112916999 94088.23200610143 91707.4295226615 62942.13649105814 92772.54461878995 0.4759810315262904 0.7332698670800444 0.8914946697564683 1.1531879383381543 1.209883948351636 0.9787286907163234 1.0141818615918938 0.988519069941381 0.6784565061753192 1.0 16.50141029263019 4.445371501052902 1.917663940151573 1.0086400211703956 0.4560567396939825 0.6068741284066985 0.13336314300161153 0.3098614166017491 1.8152697419051131 0.036473136563001114 0.24773640092169505 27885.054719383774 -4.445371501052902 -0.5525832814764131 HDSPEDVK ddPTM_BT-474_Trastuzumab_2h_R1 8 HDSPEDVK 8 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;;;;;; 175.44 0.00026609 6006456000.0 6810230.0 10478200.0 10604400.0 10688210.0 10787410.0 12699630.0 13293220.0 12230340.0 14686230.0 12717780.0 False True 6773564.478367675 10826960.552794332 12097407.344902853 12041336.290113134 12161122.721511565 11821734.469813414 12650176.16356818 13143030.075208144 11067005.401899664 11906120.392160753 0.5689144956763192 0.9093609165856442 1.0160662706609322 1.0113568394656425 1.0214177516228302 0.9929123913106993 1.062493553475012 1.1038885583469993 0.9295223832262287 1.0 23.505200051989807 4.8090016482743625 1.8443708127158587 1.0282322313737353 0.3628178805755987 0.9041714899444624 0.04376341782402359 0.2850030202525087 0.8616503962052416 0.011728697613571036 0.3470334119312501 64417.17103302614 -4.8090016482743625 -0.6654143507981366 HDSPEDVKR ddPTM_BT-474_Trastuzumab_2h_R1 7 HDSPEDVKR 9 1 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;;;;; 144.77 6.4112e-05 1971491000.0 1997409.0 2902080.0 3166600.0 3063520.0 3164140.0 3419810.0 3612530.0 3223340.0 3846340.0 3684950.0 False True 1986655.171877002 2998673.978455593 3612429.755419388 3451361.3178902194 3567074.473672886 3183406.5840668324 3437778.1226952523 3463881.9985888717 2898461.045315428 3449773.336155582 0.5758799139223811 0.8692379719640673 1.0471498859241197 1.000460314803293 1.0340025636722046 0.9227871729144999 0.9965228980888068 1.0040897360662577 0.8401888364484448 1.0 21.718070143520233 4.678108479414052 2.839621742153356 0.9829120252121352 0.5302588346707003 0.8181905720025515 0.057447665943998624 0.13097111564379818 1.585823814650461 0.01365412357341418 0.12726001660755307 47655.00060693948 -4.678108479414052 -0.4526531905414348 HDVDALLWQPHSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HDVDALLWQPHSSK 14 0 Q96RS6-2;Q96RS6;Q96RS6-3 Q96RS6-2 NUDCD1 NudC domain-containing protein 1 0 82.90799999999999 0.0054372 165880000.0 165210.0 268860.0 344770.0 336540.0 341000.0 416400.0 401390.0 300090.0 382240.0 348100.0 False True 164320.52771655656 277808.8425706976 393310.6192054389 379145.92949377676 384424.32873464935 387615.2481001654 381973.2322412949 322484.2396261437 288042.073753586 325883.9599765965 0.5042301797497407 0.8524778040338301 1.2069038906784018 1.1634384506712305 1.1796356247857578 1.1894272063221587 1.1721142466438865 0.9895676965791843 0.8838792611157414 1.0 18.31399881874493 4.5695679447095126 2.870076705183069 1.1032565349930292 0.489455875365157 0.7563238671590276 0.1043000210010746 0.1532042544914995 2.099158424731724 0.02787725398798522 0.17783807344296437 37116.5793273243 -4.5695679447095126 -0.6138006596278722 HEAMITDLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 HEAMITDLEER 11 0 P35579 P35579 MYH9 Myosin-9 0 ; 152.14 3.3086e-05 1923740000.0 1439670.0 1548630.0 1518630.0 1554280.0 1422360.0 1593720.0 1638130.0 1442600.0 1955070.0 1649320.0 False True 1431918.9766823745 1600175.2133833978 1732439.903831409 1751051.6886360806 1603489.1150117768 1483549.8876133421 1558887.393635698 1550254.1373743706 1473269.195095815 1544058.9855461065 0.9273732351461496 1.0363433187220137 1.1220037058485013 1.1340575101259907 1.0384895460743366 0.9608116668474531 1.0096035243655843 1.0040122507535378 0.9541534416023268 1.0 20.558296436262673 2.955162644011731 7.894498086620863 0.9902935264898446 1.0618211911055022 0.2619354567608695 0.05513564131179301 0.4193461771248084 67.34225522453131 0.01778541753869828 0.01907016397219504 901.9088407400621 -2.955162644011731 0.07152766461565763 HEANNPQLK ddPTM_BT-474_Trastuzumab_2h_R1 4 HEANNPQLK 9 0 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 143.03 0.00010291 1717250000.0 2227750.0 1859330.0 1671880.0 1493510.0 1614150.0 2135690.0 2032090.0 1841490.0 2547350.0 1988600.0 False True 2215756.0415262943 1921216.6750612797 1907266.171758531 1682588.2128669706 1819702.4346833848 1988054.7771734938 1933790.0433623483 1978911.33469675 1919589.725241205 1861685.8454738832 1.1901879400937725 1.0319768395576125 1.024483360818079 0.9037981445460664 0.9774487135450011 1.0678787626853574 1.0387305935981435 1.0629673849150567 1.0311029274397168 1.0 20.82817821181521 4.745568136206465 3.6778970110658764 1.016552365714832 1.2104399120604667 0.5800353663718955 0.04480459782133258 0.22790575133049545 5.683898241424589 0.012124926091850069 0.1220844452315875 55663.19570692351 -4.745568136206465 0.19388754634563465 HEAPSS(ph)PISGQPCGDDQNASPSK ddPTM_BT-474_Trastuzumab_2h_R1 6 HEAPSSPISGQPCGDDQNASPSK 23 0 O75376;O75376-2;A0A088AWL3;E7EVU5;E7EW50;J3KS51;O75376-3 O75376 NCOR1 Nuclear receptor corepressor 1 1 HEAPS(0.021)S(0.979)PISGQPCGDDQNASPSK;HEAPS(0.006)S(0.994)PISGQPCGDDQNASPSK;HEAPS(0.021)S(0.979)PISGQPCGDDQNASPSK;HEAPS(0.11)S(0.89)PISGQPCGDDQNASPSK;HEAPS(0.141)S(0.859)PISGQPCGDDQNASPSK;HEAPS(0.152)S(0.679)PIS(0.169)GQPCGDDQNASPSK 310.37 2.3945999999999992e-73 5151600000.0 2552791.0 2337250.0 2297128.0 2177668.0 2275952.0 2760565.0 2510852.0 2327112.0 3098256.0 2644013.0 True False 2539047.0568977403 2415043.9533525384 2620543.6554054916 2453360.5455186716 2565780.9965756116 2569733.6392210266 2389392.4963738997 2500772.9142753016 2334732.3233033977 2475269.8266865867 1.0257657688562083 0.9756689663952043 1.0586900980057472 0.9911487301579388 1.0365661831745365 1.0381630364156662 0.9653058711471295 1.0103031545546102 0.9432233601896592 1.0 21.239154369831365 2.2383175340175807 24.999999866248547 0.9832077127407167 1.020003742227782 0.33912702112867243 0.02804900123419224 8.040254628370201 826790.6542890966 0.009590582682390854 0.007538577020905865 173.10815753558046 -2.2383175340175807 0.036796029487065174 HECQANGPEDLNR ddPTM_BT-474_Trastuzumab_2h_R1 11 HECQANGPEDLNR 13 0 P60981;P60981-2 P60981 DSTN Destrin 0 ;;;;;;;;;; 331.8 4.354199999999998e-62 8150620000.0 2335601.0 2517557.0 2289358.0 2444808.0 2338240.0 2634886.0 2594517.0 2171142.0 2756576.0 2346509.0 False True 2323026.3837256646 2601352.3628496574 2611679.7069435404 2754320.4421281903 2636001.004165708 2452742.5326744807 2469010.3006925625 2333163.6408756874 2077254.781025968 2196752.786672571 1.057481933251288 1.1841807501653085 1.1888819364601606 1.2538144750917415 1.1999534131277774 1.1165309758817505 1.123936346261511 1.062096588669742 0.9456024335685004 1.0 21.066941093382628 1.6820138535238225 1.3547211434860658 0.9713612791378358 1.1763428076161526 0.6861533578709951 0.05159204871640714 0.23259056976693873 0.8178110728866189 0.04397430177330065 0.016449069588851638 48.08546869490457 -1.6820138535238225 0.20498152847831685 HEDEQALLDQNSQT(ph)PPPS(ph)PFSVQAFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEDEQALLDQNSQTPPPSPFSVQAFNK 27 0 A0A499FJI4;O75592-2;O75592;A0A087WY34 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 2 HEDEQALLDQNS(0.014)QT(0.986)PPPS(1)PFSVQAFNK 154.33 8.3333e-08 121330000.0 154300.0 148470.0 127040.0 135560.0 133340.0 140480.0 119170.0 119850.0 167260.0 140230.0 True False 153469.26594434178 153411.73419798983 144926.12774852483 152721.88210072 150320.05863190093 130768.94825434983 113405.29182639121 128793.81558596846 126041.01416917327 131280.40134305682 1.1690188662914116 1.1685806306845474 1.1039433629533897 1.1633258318706166 1.1450304622324428 0.9961041169628171 0.8638402279868488 0.9810589720045835 0.9600901039280633 1.0 17.002292028933926 2.671054270069436 3.7629065888359015 0.948307401346026 1.150232856003578 0.8634986948777781 0.03797495422464858 0.07714894785904577 2.1610907348515167 0.012361734725081801 0.011795322429415871 468.8719694071257 -2.671054270069436 0.20192545465755196 HEDEQALLDQNSQT(ph)PPPSPFSVQAFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 HEDEQALLDQNSQTPPPSPFSVQAFNK 27 0 A0A499FJI4;O75592-2;O75592;A0A087WY34 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 HEDEQALLDQNS(0.276)QT(0.724)PPPSPFSVQAFNK;HEDEQALLDQNS(0.001)QT(0.999)PPPSPFSVQAFNK 160.11 5.2328e-11 500720000.0 173464.0 189230.0 174907.0 151170.0 150811.0 181040.0 184125.0 170164.0 213440.0 175486.0 True False 172530.08909766222 195528.4061580496 199532.3852811024 170308.1065001909 170015.88692317074 168525.1309223199 175218.17032419468 182862.5017552836 160840.57194947003 164286.3332388768 1.0501791944360872 1.1901684230406797 1.2145403780543138 1.0366541339294382 1.0348754127707203 1.0258012799961866 1.0665413663437402 1.113071904096834 0.9790258798679465 1.0 17.325852943838683 3.7214245304208067 24.6406431498155 1.0465799333614922 1.1554832411528695 0.4914295464932823 0.052914935875382464 566.00608517819 813882.3215211126 0.014270961254377034 0.022164807147648968 5265.317088282776 -3.7214245304208067 0.10890330779137725 HEDGEFWMSFSDFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HEDGEFWMSFSDFLR 15 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 115.91 0.00049027 65959000.0 39040.0 48548.0 47762.0 46696.0 42813.0 46590.0 42567.0 38312.0 49629.0 40710.0 False True 38829.81297775175 50163.890832114244 54486.47444525382 52607.70881215124 48264.981777467925 43369.342961063216 40507.871588268805 41171.03598439404 37398.59794452893 38111.852946415485 1.018838234717837 1.3162280748365525 1.4296464284184958 1.3803503305419615 1.2664034426593622 1.1379489478519886 1.0628680700784103 1.080268546435664 0.981285218462367 1.0 15.217952131273895 2.559307774971113 2.0228051854288154 1.0392595551932529 1.3011677192679159 0.5604991119145057 0.1048613654225435 0.25509084256436776 2.087678237624245 0.04315614834244532 0.037503089303336304 362.4998030674027 -2.559307774971113 0.261908164074663 HEDLKDMLEFPAQELR ddPTM_BT-474_Trastuzumab_2h_R1 2 HEDLKDMLEFPAQELR 16 1 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 0 ; 127.22 4.0506e-05 289250000.0 322860.0 333020.0 277650.0 282270.0 291410.0 339270.0 346320.0 318910.0 470240.0 329920.0 False True 321121.7576331183 344104.3693851589 316740.7066229373 318005.35305820475 328519.3361776075 315817.06345567526 329567.1785291248 342708.6835921676 354355.6528931727 308864.223141277 1.0396858346595703 1.1140959153037377 1.025501443325333 1.0295959493914792 1.063636742502676 1.0225109928358973 1.0670293087923561 1.1095771472224218 1.1472861741292955 1.0 18.236613242501992 1.9457238724071118 5.736452758672225 1.0960962399206726 1.0503171717370334 0.11388442400779286 0.042685904841602076 0.3483476653212379 25.256277789791852 0.01782633012740379 0.010970943598405189 88.25186102449042 -1.9457238724071118 -0.04577906818363919 HEDLLAQATGIESLEGVLQMMQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HEDLLAQATGIESLEGVLQMMQTR 24 0 Q9UP83-3;Q9UP83;Q9UP83-2;U3KQU7 Q9UP83-3 COG5 Conserved oligomeric Golgi complex subunit 5 0 ; 173.55 4.0263e-12 136927000.0 121202.0 126356.0 121656.0 133790.0 118072.0 138156.0 134824.0 128362.0 166336.0 123377.0 False True 120549.46189880827 130561.68307618517 138784.10734709186 150727.8002822022 133107.76933242683 128605.6009042422 128302.04804230388 137941.02424902865 125344.72158820769 115502.97423163599 1.043691408820796 1.1303750742760064 1.2015630616469375 1.304968995689448 1.1524185434868994 1.1134397339961954 1.110811638365259 1.194263828846469 1.0852077396451671 1.0 16.8175704763291 2.99594016183793 24.964068910032765 1.1214451988731564 1.1769450650144653 0.13041146539386228 0.07646128186137764 434.1715791655416 2669763.0412094505 0.02323270893543703 0.02718888704861157 990.6954350345273 -2.99594016183793 0.05549986614130886 HEDLVPPAGS(ph)PELS(ph)PPQPLFR ddPTM_BT-474_Trastuzumab_2h_R1 3 HEDLVPPAGSPELSPPQPLFR 21 0 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 2 HEDLVPPAGS(1)PELS(1)PPQPLFR;HEDLVPPAGS(1)PELS(1)PPQPLFR;HEDLVPPAGS(1)PELS(1)PPQPLFR 145.19 6.3674e-08 132052000.0 266219.0 257618.0 228406.0 240303.0 228534.0 245832.0 230734.0 220839.0 235564.0 216526.0 True False 264785.7064837113 266192.6593966305 260563.57945945844 270725.3351611784 257636.45027285762 228838.2124662826 219572.5149305241 237319.12757771963 177512.40859588183 202707.12530276502 1.3062476520656352 1.3131884683335278 1.2854189465233574 1.3355491809023525 1.2709787575944838 1.1289105507489585 1.0832007735424634 1.1707488191313347 0.8757087760518918 1.0 17.62903727591204 2.1938504881936507 0.699943234915279 0.973795460112898 1.323569102057945 0.8016525226790658 0.06518619838530453 0.3175615089092079 0.30031843608585757 0.056362723347119774 0.03559414120072458 156.26096003373272 -2.1938504881936507 0.349773641945047 HEDLVPPAGS(ph)PELS(ph)PPQPLFRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HEDLVPPAGSPELSPPQPLFRPR 23 1 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 2 HEDLVPPAGS(1)PELS(1)PPQPLFRPR;HEDLVPPAGS(1)PELS(1)PPQPLFRPR;HEDLVPPAGS(1)PELS(1)PPQPLFRPR 170.82 3.9202e-12 669063000.0 364201.0 392968.0 339516.0 391979.0 371807.0 403814.0 406544.0 365738.0 471966.0 387568.0 True False 362240.1822825355 406047.702325828 387316.9016740253 441603.5012094875 419154.41757725435 375899.28865590837 386877.9135711034 393031.22673993284 355656.30332038755 362833.07842634124 0.9983659258787064 1.119103319043883 1.067479578636749 1.2170982401185273 1.1552265835165492 1.036011629056086 1.0662696886652343 1.0832287630570103 0.980220174144319 1.0 18.46894646256961 1.4696773700835564 1.0684092433898869 0.989657754450807 1.1064216894836187 0.30734165692228377 0.05926143281646497 0.5854925919402899 1.3108294690480118 0.05521699069038325 0.01967156475438052 29.490176381335296 -1.4696773700835564 0.1167639350328118 HEDPCAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEDPCAK 7 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 82.671 0.023857 248240000.0 377190.0 301560.0 260240.0 250080.0 272840.0 264110.0 321650.0 311490.0 450970.0 338990.0 False True 375159.250949749 311597.2423031302 296879.52995336987 281740.10235872 307584.55675062095 245852.69734806637 306090.5606776763 334734.9655141709 339834.4861884023 317355.3679760598 1.1821424459977932 0.981855905858306 0.9354797804326582 0.8877748126824611 0.9692117663307466 0.7746921027868439 0.9645041223968417 1.0547638366697556 1.0708326389930112 1.0 18.275739720041415 -0.4170249406150237 8.395217167939213 0.9999999025167458 0.9749013995569116 0.000999752159702716 0.10389772473720775 0.0 0.0 0.1031958475478661 0.0243234945304631 0.38280275913145934 0.4170249406150237 -0.02509850295983418 HEDTNLASSTLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HEDTNLASSTLLR 13 0 P49407-2;P49407;H0YET9 P49407-2 ARRB1 Beta-arrestin-1 0 91.812 0.0063601000000000005 383280000.0 223280.0 226350.0 194400.0 177120.0 168030.0 213160.0 202690.0 173310.0 234270.0 213120.0 False True 222077.88528874022 233883.92291853583 221769.83024490907 199543.37383947714 189427.62450816174 198424.75092466705 192885.11034900727 186243.2722503482 176537.29755717012 199518.49913878806 1.1130691452037214 1.1722417917540702 1.1115251528162442 1.0001246736558087 0.9494238645830683 0.9945180611379791 0.9667530137886287 0.9334636790786733 0.8848166877717346 1.0 17.606162992205146 3.69283123090498 2.3321432673373477 0.9529025993920391 1.1446975278616405 0.8512100710588707 0.033336656054442734 0.10431773085543936 1.1084617700739081 0.009557647625152054 0.018053159231216986 4929.821912823078 -3.69283123090498 0.19179492846960133 HEDVCTALLITAFNSLAWK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEDVCTALLITAFNSLAWK 19 0 Q9HAV4;H0Y3W3 Q9HAV4 XPO5 Exportin-5 0 139.67 1.8269000000000006e-07 104680000.0 155750.0 179790.0 139090.0 159040.0 151470.0 168410.0 197770.0 128290.0 218790.0 176770.0 False True 154911.4593054516 185774.20146464973 158672.6630080472 179174.44769326143 170758.80666697197 156768.21309449797 188203.10954523247 137863.6512434201 164872.13613579728 165488.38725958884 0.9360865851115823 1.1225814967502228 0.95881448623431 1.0827010321407287 1.0318476691607117 0.9473064285084113 1.1372587083709553 0.8330714530873037 0.9962761669625501 1.0 17.336370457446275 1.7353892393767512 24.999999961323915 0.9306229269102282 1.0305028372373133 0.20179122562465857 0.07887767407104705 0.48955648305383653 3804.348453938792 0.03309148790000251 0.018350878439269618 54.373744154404676 -1.7353892393767512 0.0998799103270851 HEEAPGHRPTTNPNASK ddPTM_BT-474_Trastuzumab_2h_R1 4 HEEAPGHRPTTNPNASK 17 1 P21291;E9PS42;E9PP21;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 ;;; 113.01 0.00027921 2795650000.0 1028720.0 926742.0 856568.0 848851.0 817679.0 1088883.0 1096000.0 686645.0 1279320.0 999574.0 False True 1023181.4858215377 957588.0472426318 977165.3289774755 956315.4495653469 921805.5738868616 1013611.0811648715 1042982.2928734138 737885.9366126616 964048.728009726 935780.3315416448 1.0933992213064625 1.023304310815189 1.0442251199783728 1.0219443787516582 0.9850661985684604 1.0831720298021277 1.1145588956279513 0.7885247335739966 1.0302083678351208 1.0 19.835810380538828 1.7578572213494736 24.99999999999693 0.9196308680789742 1.0482587795205685 0.3416300426540173 0.06989453730527818 7.71084821299149 9999.375536684183 0.03075561114275757 0.017055957549726396 57.26077495184957 -1.7578572213494736 0.12862791144159424 HEEEEWT(ph)DDDLVESL ddPTM_BT-474_Trastuzumab_2h_R1 2 HEEEEWTDDDLVESL 15 0 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL 249.66 1.4953e-17 468530000.0 718920.0 688880.0 473160.0 598570.0 650760.0 618130.0 594590.0 503970.0 687180.0 521210.0 True False 715049.414599521 711808.9543632459 539776.8152195537 674348.9006272352 733630.4286432866 575400.128021507 565827.4101456228 541578.8005078069 517833.6967402404 487945.93156966934 1.4654275573100575 1.4587865341420787 1.1062225961863232 1.3820156230382485 1.5035076248781842 1.1792292768391508 1.159610878044248 1.1099155981598339 1.061252206928799 1.0 18.896361768581727 2.5375039297612463 4.396303889887236 1.102030209840819 1.3717905176128977 0.6263135231046048 0.10982085165323026 0.1646765471753385 6.415060227021066 0.03855557517923583 0.035268129754088016 344.749726064739 -2.5375039297612463 0.2697603077720787 HEEEFDLFMR ddPTM_BT-474_Trastuzumab_2h_R1 4 HEEEFDLFMR 10 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 0 ;;; 180.09 2.0351e-06 606730000.0 433752.0 515360.0 446618.0 497513.0 477317.0 495944.0 504640.0 410872.0 546200.0 487864.0 False True 431416.72742637765 532513.4460583015 509497.9323267533 560498.094788843 538100.4906704886 461660.5586066014 480228.63528799266 441533.35500574135 411596.3287050252 456728.1018386159 0.9445810881565112 1.1659309858854803 1.11553882994216 1.2272029956827444 1.1781637444779465 1.010799547363364 1.0514541000537792 0.9667313073758628 0.901184593301995 1.0 18.800976033883597 2.2230410081612666 1.5075305893362327 0.9561061622700582 1.129563101690433 0.4449099585350742 0.07793260500150752 0.358306649326059 1.5967374659922662 0.045073097524132424 0.026528349171686526 167.12484141256894 -2.2230410081612666 0.17345693942037488 HEEFEEGCK ddPTM_BT-474_Trastuzumab_2h_R1 2 HEEFEEGCK 9 0 Q9HC38-2;F6TLX2;I3L3Q4;Q9HC38-3;I3L1F4 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 ; 158.76 6.657e-05 1685040000.0 3037300.0 2576700.0 2226690.0 2102280.0 2088730.0 2817600.0 2551600.0 2229800.0 3631600.0 2527300.0 False True 3020947.5142757506 2662463.901851958 2540188.5972635653 2368428.432448378 2354717.3846273464 2622825.94391697 2428169.3599414257 2396198.998694975 2736640.8409468504 2366005.550269613 1.2768133675474704 1.125299093887824 1.0736190356671411 1.0010240390934368 0.9952290197962637 1.1085459810599732 1.0262737378890463 1.0127613599308427 1.156650220298512 1.0 21.174022027337063 4.712950798549601 1.6711261192240863 1.0417568630301983 1.352076464707864 0.6683434939042021 0.0497717839148476 0.5190380386431449 1.4700236729539506 0.012785432961704785 0.255442781956472 51635.78675037464 -4.712950798549601 0.3103196016776657 HEENHRPLFHK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEENHRPLFHK 11 1 E5RIA4;E7ETB3;Q9ULA0-2;Q9ULA0;E7EMB6 E5RIA4 DNPEP Aspartyl aminopeptidase 0 132.62 0.00011525 112990000.0 79536.0 75223.0 71418.0 60270.0 56487.0 79544.0 78611.0 13640.0 91275.0 60329.0 False True 79107.78701328034 77726.75208173633 81473.03362361576 67900.17582037761 63680.28462532007 74045.31050643514 74808.2856068175 14657.886062516576 68781.49927233835 56478.75156974453 1.4006645829554438 1.3762122908427437 1.4425431044276231 1.20222515429593 1.127508715320708 1.3110295190395278 1.324538583584628 0.25952921506092136 1.2178296679840983 1.0 15.78542057856852 1.781535416655353 24.999999999847613 0.7483868516110088 1.3082188452215184 0.4445191915523966 0.24454958119928882 53.22041830093497 30971.123084541316 0.10722968295936387 0.0596840603718347 60.46936620191815 -1.781535416655353 0.5598319936105096 HEENLK ddPTM_BT-474_Trastuzumab_2h_R1 5 HEENLK 6 0 P42766 P42766 RPL35 60S ribosomal protein L35 0 ;;;; 159.19 0.0091926 2928970000.0 4156670.0 3531190.0 3234910.0 2843190.0 2668730.0 2737690.0 3564240.0 3356570.0 5131270.0 3683980.0 False True 4134290.9505694564 3648723.52450057 3690357.2096582204 3203137.5624811584 3008576.9466980086 2548439.934129065 3391824.0944809625 3607054.297717103 3866737.2639953024 3448865.2423860384 1.1987394867620915 1.0579489971537024 1.0700207025500104 0.928751150701708 0.8723382142401644 0.738921284255795 0.9834608939763582 1.0458669864472943 1.1211621771919875 1.0 21.71769032875805 4.399163021280119 1.4279487708590255 0.9557558469292551 1.2070941989846753 0.3516861708099004 0.10002466095157661 0.8485867706265028 2.458573618645871 0.0314643381826086 0.2568829206671813 25070.50148769429 -4.399163021280119 0.2513383520554202 HEEQPAPGYDTHGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HEEQPAPGYDTHGR 14 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 0 ; 122.33 6.325100000000001e-05 680960000.0 231270.0 338720.0 341270.0 393100.0 354140.0 314930.0 344550.0 250947.0 270890.0 305680.0 False True 230024.8680165125 349994.0904394358 389317.84962798416 442866.41969454894 399237.6298477681 293159.6303654785 327882.80019118113 269673.9394230461 204132.78924002993 286171.24069418514 0.8038014842390363 1.223023283508263 1.3604366696093892 1.5475573947272185 1.39510046110612 1.0244203074157319 1.145757342337453 0.9423516450111463 0.7133239131397379 1.0 18.126519167491395 1.9783367442538413 1.4173495432668497 0.8605596784186257 1.2683306794187854 0.3685761369226387 0.2022524673219106 0.44813846214580105 1.6743443574842707 0.1485207248881112 0.0691217421902586 95.13421616207617 -1.9783367442538413 0.4077710010001597 HEGALETLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 HEGALETLLR 10 0 Q8WUM4;Q8WUM4-2;A0A3B3IT07;Q8WUM4-3;C9IZF9;F8WEQ7;F8WBR8 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ;; 188.99 1.0606e-06 910980000.0 661400.0 595550.0 613000.0 518856.0 526289.0 625640.0 589272.0 504807.0 676230.0 598025.0 False True 657839.0958884478 615372.521732423 699305.0717084839 584543.1164004952 593308.7845907033 582390.979398145 560766.6621223555 542478.2616980056 509582.1775177575 559858.5325050388 1.1750095027488523 1.0991571727575387 1.2490745985052751 1.0440907523281058 1.0597476865021496 1.0402466794464786 1.0016220697990499 0.9689559597685032 0.9101981088645305 1.0 19.09470280118385 2.9963955725174896 0.7678882533583926 0.9572644886793013 1.1727938974577972 0.7230679025275928 0.04953996807595511 0.34218175520449007 0.44956727816678027 0.029372506937916328 0.038367343671597054 991.7348447850568 -2.9963955725174896 0.2155294087784959 HEGVFICR ddPTM_BT-474_Trastuzumab_2h_R1 6 HEGVFICR 8 0 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299;M0R2U2;M0R1H0;M0R2B0 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ;;;;; 138.54 0.00070074 2469940000.0 1631920.0 1843210.0 1732020.0 1527770.0 1616060.0 1786770.0 1589190.0 1571580.0 1998110.0 1655160.0 False True 1623133.9240433564 1904560.1306060252 1975873.3610122814 1721185.5253542121 1821855.661861929 1663254.7955041642 1512314.8084046547 1688859.2799215403 1505702.5638022663 1549526.2717462317 1.0475033264290337 1.2291241299572737 1.2751467316430716 1.1107817639093849 1.1757500954203228 1.0733956731367753 0.9759852646450184 1.0899197456125012 0.9717179961753223 1.0 20.5633957849109 2.618567242908872 3.0530215627309447 1.0227498981432446 1.1750229234074483 0.5577407230474226 0.06595103630536617 0.2053460749890931 3.6608531096192207 0.022852735412734006 0.02127827732442131 415.4963786129247 -2.618567242908872 0.15227302526420372 HEHPPNPPVS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEHPPNPPVSPGK 13 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 HEHPPNPPVS(1)PGK 55.437 0.083574 502590000.0 285260.0 217520.0 196810.0 201280.0 182280.0 272700.0 233440.0 78987.0 346790.0 161860.0 True False 283724.1918553654 224760.02170638318 224519.13729681348 226762.02736229642 205492.2775417948 253848.89086675143 222147.61537259998 84881.41102785908 261328.25124792295 151529.95622468222 1.872396712335026 1.4832712112258417 1.4816815294522094 1.4964831576012816 1.3561165241617277 1.675238990304696 1.466031013981215 0.5601625786917045 1.7245979459034255 1.0 17.20924350526124 1.969490222060561 24.25804892770927 1.0378110238528533 1.5439328204998957 0.3283305400887683 0.29520591308739563 460.6788315495103 366280.6924372306 0.11458422807655078 0.07406143742574128 93.21594829656271 -1.969490222060561 0.5061217966470424 HEHQVMLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 HEHQVMLMR 9 0 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 54.416 0.074928 16180000.0 21771.0 25359.0 20640.0 19268.0 20804.0 18560.0 21213.0 14038.0 29071.0 23960.0 False True 21653.78735498548 26203.05898516079 23545.932593903915 21707.32682440745 23453.266085031246 17276.990885540534 20186.846148470548 15085.586843519619 21906.84158144229 22430.852286811958 0.9653573158125897 1.1681704578192365 1.0497119009493705 0.9677441831833604 1.0455806932855782 0.7702333671778671 0.8999589445087312 0.6725373896019577 0.9766388410627734 1.0 14.45319681792267 2.749044742502297 24.30898272014929 0.8327437517670536 1.0430733630767255 0.3953043386659233 0.10496945971519425 406.62720356716255 942823.7247215186 0.03126047861563279 0.03281843166303445 561.1057800906138 -2.749044742502297 0.21032961130967187 HEIEGTGLPQAQLLWR ddPTM_BT-474_Trastuzumab_2h_R1 2 HEIEGTGLPQAQLLWR 16 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ; 212.39 4.6239e-12 796330000.0 482230.0 549460.0 484080.0 495330.0 471500.0 526570.0 571610.0 450490.0 578910.0 498800.0 False True 479633.72726078925 567748.4439444166 552234.2563012112 558038.7272126713 531542.7302005491 490169.45531244995 543959.0405377486 484107.85134186887 436245.38749656954 466966.15695583547 1.0271273841075208 1.2158235355760758 1.1826001693596826 1.1950303440629195 1.138289621812617 1.0496894646667274 1.16487893701726 1.036708643936384 0.9342120001596359 1.0 18.83295846985092 1.5577143351115281 3.359302466978923 0.9688665856714462 1.1423990968794182 0.585312548466816 0.05900868821442963 0.13749730434651264 3.5081853053810534 0.03896684561060891 0.015552012138240144 36.117221706688554 -1.5577143351115281 0.17353251120797197 HEIS(ph)PGHDGTWNDNQLQEMAQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HEISPGHDGTWNDNQLQEMAQLR 23 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-2;C9J1B2 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 HEIS(0.5)PGHDGT(0.5)WNDNQLQEMAQLR 95.206 0.0066959 107230000.0 52177.0 48637.0 64608.0 55056.0 55438.0 50792.0 56069.0 47517.0 56339.0 46263.0 True False 51896.084829409694 50255.853143312655 73704.24481719692 62026.08395498118 62497.70069323024 47280.86859150726 53356.72826561989 51062.95982643697 42455.00835392241 43310.45573225298 1.1982345591150882 1.1603630646141525 1.701765626130549 1.4321272520988693 1.443016464190393 1.0916733105696124 1.2319595202477984 1.1789984419030428 0.9802484789442304 1.0 15.402427732726165 2.7365433087789075 24.811531966511463 1.124670805115993 1.3944876072677594 0.4592687806323542 0.15603620134592502 170.74417648017933 2100027.6350870617 0.05186019078047287 0.05117236061252662 545.184259924048 -2.7365433087789075 0.2698168021517664 HEIVDT(ph)PPGPEHLQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEIVDTPPGPEHLQDK 16 0 A0A499FJD3;A0A3B3ISA1;Q96S15 A0A499FJD3 WDR24 WD repeat-containing protein 24 1 HEIVDT(1)PPGPEHLQDK 85.97399999999998 0.013004 126130000.0 129070.0 112170.0 107580.0 94752.0 90373.0 142880.0 124750.0 84840.0 164010.0 113280.0 True False 128375.10146102523 115903.51064180299 122726.32889787729 106747.59348485855 101881.46586726245 133003.04190334232 118715.36590872121 91171.19160879076 123591.93312140465 106050.37341611258 1.2105106028935566 1.0929099720095223 1.1572456083330593 1.0065744235148544 0.9606893647371474 1.254149680185235 1.119424308322939 0.8596970352104278 1.1654078070660234 1.0 16.69439017521688 7.999999999999999 0.40991728154605894 1.0329555740704472 3.899366106269806 0.14256425830641384 0.1083166553900478 144.07754060452618 1.8829937550607183 0.07629625512533549 336.0287602291928 99999999.99999979 -7.999999999999999 2.8664105321993585 HEIVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HEIVPK 6 0 P25788-2;P25788;G3V4X5;H0YJ03 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ; 79.027 0.06823 935820000.0 2468040.0 2429330.0 2167170.0 2086960.0 2085650.0 2571130.0 2517020.0 2484940.0 3529200.0 2526700.0 False True 2454752.3468650193 2510188.780489002 2472288.6986206793 2351168.922019168 2351245.1648839335 2393393.834889 2395262.126649853 2670378.8410696434 2659475.948857151 2365443.842783298 1.0377554953816348 1.0611914496077786 1.0451690519575652 0.9939652252545833 0.9939974572033562 1.0118159609626642 1.0126057881092918 1.1289123811654493 1.1243031437719022 1.0 21.17367948003647 1.7499985525187265 24.999999999999996 1.0959350646338535 1.0221399706581897 0.3361500578716793 0.03895932986045554 2.9397042381753598 6436.72283971546 0.017852935864231846 0.009900316679192339 56.233945093862594 -1.7499985525187265 -0.07379509397566375 HEKEDGAISTIVLR ddPTM_BT-474_Trastuzumab_2h_R1 5 HEKEDGAISTIVLR 14 1 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;;; 188.25 5.133e-07 3635070000.0 3925270.0 3731230.0 3488690.0 3358020.0 3319050.0 4220610.0 4177000.0 3600380.0 5487930.0 4309350.0 False True 3904136.7824585 3855421.7349738358 3979867.227762922 3783144.9876944534 3741711.3439493845 3928849.164947262 3974942.5523104416 3869058.6379591934 4135503.1859944523 4034323.593579846 0.9677302010853758 0.9556550548174392 0.986501735779553 0.9377395987061836 0.9274693160221159 0.9738557341308878 0.9852810415694214 0.9590352752358159 1.0250796918163982 1.0 21.94389537665866 1.2453405768717507 24.999944273147463 1.012539851773139 0.9617968635863868 0.5449033109284682 0.018599558422861658 107.97403013761729 398146.7511936492 0.01347654595660814 0.004680421548995897 17.593027310489934 -1.2453405768717507 -0.05074298818675216 HELIEFR ddPTM_BT-474_Trastuzumab_2h_R1 8 HELIEFR 7 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;;; 168.45 0.0010485999999999998 11061250000.0 4993010.0 5441840.0 5078140.0 4869230.0 4237740.0 4938240.0 5116260.0 4202450.0 5636250.0 4496940.0 False True 4966128.188935565 5622968.354738258 5793097.972015862 5485674.018746604 4777391.069947138 4596871.092166576 4868766.957788803 4516058.158608712 4247271.709380628 4209941.439175972 1.179619303661289 1.33564051566448 1.3760519132422346 1.303028580801432 1.134788010467489 1.0919085594374298 1.1564927988028701 1.0727128212720836 1.008867170896316 1.0 22.005368734682826 3.152272782216629 3.217073781895306 1.0800359150066892 1.3088305669363112 0.7512946240020492 0.06295633735851401 0.12466061888918897 2.5791466748700547 0.019274097417701225 0.024116214689302563 1419.949117749992 -3.152272782216629 0.228794651929622 HELLNSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HELLNSTR 8 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 ; 80.688 0.0248 190926000.0 107044.0 177808.0 166031.0 161634.0 129694.0 127888.0 157420.0 107694.0 165503.0 125497.0 False True 106467.68699770645 183726.23179279434 189406.72163267748 182096.8478272926 146209.76214343583 119047.40357597025 149804.99319720126 115730.67313905137 124717.00327657953 117487.67401661268 0.9062030369471097 1.5637915494591847 1.6121412158172055 1.5499229970417512 1.2444689484852842 1.0132756867681032 1.2750698696785752 0.9850452322571909 1.061532661366201 1.0 16.842149881713137 3.005231373113947 4.59059919927348 1.0792939327251345 1.4326763597952474 0.3898103750857965 0.19981991973485447 0.19473143120429728 10.68692544132529 0.06007865411137766 0.06914967456446551 1012.1185231534241 -3.005231373113947 0.3533824270701129 HELLQPFNVLYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HELLQPFNVLYEK 13 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ; 164.65 3.6677e-05 3227800000.0 3123700.0 3170400.0 3099800.0 2995600.0 2698300.0 3516300.0 3630200.0 3069400.0 4353600.0 3552000.0 False True 3106882.346275697 3275924.8474527276 3536224.896055399 3374842.652854214 3041912.510922887 3273226.457479855 3454593.357289292 3298454.214097391 3280713.615251187 3325308.3189798025 0.9343140690271036 0.9851492051894226 1.0634276755246277 1.0148961627382596 0.914776080630063 0.984337734578571 1.0388791131251114 0.9919243263161082 0.9865893025696043 1.0 21.665056681258715 HELQANCYEEVK ddPTM_BT-474_Trastuzumab_2h_R1 8 HELQANCYEEVK 12 0 G3V1A4;P23528;E9PP50;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 ;;;;;;; 217.12 3.743e-11 29066150000.0 18764910.0 13802560.0 12472130.0 10871740.0 10476530.0 15905030.0 14467430.0 13897270.0 19529460.0 13691240.0 False True 18663881.80953748 14261969.865776293 14228097.494302655 12248101.169295387 11810653.996241711 14805552.712513387 13767585.139950385 14934354.856307149 14716686.26435672 12817453.341539703 1.456130271139764 1.1126991833514306 1.1100565077300681 0.9555799301879165 0.921450906161282 1.1551087659925792 1.0741279701273754 1.1651577312871382 1.1481755284930002 1.0 23.611606310216548 4.772056857965479 2.912663401450499 1.072188565892675 1.5404888380238202 0.6768021964700411 0.08022385373599926 0.3025486131631655 3.4078859760289255 0.021383541047783457 0.3453796985802942 59163.90866742371 -4.772056857965479 0.4683002721311451 HELQANCYEEVKDR ddPTM_BT-474_Trastuzumab_2h_R1 29 HELQANCYEEVKDR 14 1 G3V1A4;P23528;E9PP50;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;; 284.68 8.731e-34 133579994300.0 45912956.1 39741141.7 35302818.1 35030882.0 33908324.0 47344288.699999996 46158093.2 40723263.2 59976631.0 43098979.3 False True 45665765.84576652 41063901.57745704 40273148.03088432 39465788.06940275 38226348.07101761 44071489.45863688 43925249.890876584 43762239.888524495 45196193.935730554 40348365.54218145 1.131787254133655 1.017733953424397 0.9981357978127146 0.9781260662998598 0.94740759773911 1.092274466795022 1.0886500432082125 1.0846099786315775 1.1201493128260929 1.0 25.26600689726976 2.7024057951363685 24.934525609532614 1.0834195372019713 1.0118648624717226 0.25182119442407336 0.053209438021876304 721.0502576509099 497279.0236077233 0.01724360271501849 0.016257857892977463 503.97128845713985 -2.7024057951363685 -0.07155467473024868 HELS(ph)PPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HELSPPQK 8 0 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 HELS(1)PPQK;HELS(1)PPQK 97.813 0.005130699999999999 891920000.0 1524450.0 1175220.0 1059880.0 934530.0 1031880.0 1395750.0 1264720.0 1243440.0 1519970.0 1172660.0 True False 1516242.530582318 1214336.4872645093 1209101.891357893 1052841.4021804805 1163283.8015680653 1299265.0877420898 1203540.6619004242 1336231.8068603813 1145393.7600545154 1097819.8348352646 1.3811396756279601 1.1061345848672235 1.1013664109460428 0.9590293131645473 1.059630883552604 1.1834957308245877 1.096300707739557 1.2171685776299461 1.0433349113485362 1.0 20.06620987984508 HELS(ph)PPQKR ddPTM_BT-474_Trastuzumab_2h_R1 11 HELSPPQKR 9 1 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR 142.07 4.9472e-05 23280118000.0 2958269.0 2615537.0 2314269.0 2255079.0 2450922.0 2919789.0 2752857.0 2530297.0 3421246.0 2621188.0 True False 2942342.0083985855 2702593.5679194927 2640097.9592132485 2540571.7701815437 2763032.3889471716 2717950.858874006 2619690.789975023 2719120.6107278224 2578125.76564766 2453901.537728052 1.1990464829826695 1.1013455619012702 1.075877706836431 1.035319360259962 1.1259752465477195 1.107603877778415 1.06756149327836 1.1080805684018291 1.0506231509331956 1.0 21.226645931657796 1.6424089811962335 0.012759565838554828 8.221981748416254e-07 2.148711890973207 0.4628778343237171 0.038231595499620616 628.2798511979886 8.070878608338282 676.9726069641229 680.4047638508042 43.894386278614206 -1.6424089811962335 2.148711068775032 HELSTEYIPDPER ddPTM_BT-474_Trastuzumab_2h_R1 2 HELSTEYIPDPER 13 0 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 ; 92.939 0.0026581 310530000.0 208330.0 281750.0 258540.0 244370.0 270280.0 281780.0 266690.0 241730.0 321790.0 265600.0 False True 207208.37442763895 291127.87842852843 294940.18473003496 275307.2169441795 304698.55592492985 262301.21183877235 253789.1858452653 259769.12008006856 242489.16626508633 248649.18060839997 0.8333362447470657 1.1708378757420022 1.186169944370495 1.1072114385036465 1.2254154836922733 1.0549047907456133 1.0206717159666028 1.044721400024163 0.9752260822728586 1.0 17.923752151368173 2.4875766880197765 22.9954819840872 1.0199732908591024 1.115672626338269 0.15504693107521894 0.10141804431776359 316.69702956115447 696542.0902713779 0.03336979399068759 0.029634594459369334 307.3099967475726 -2.4875766880197765 0.09569933547916665 HEMLPEFYK ddPTM_BT-474_Trastuzumab_2h_R1 2 HEMLPEFYK 9 0 Q86VP6;Q86VP6-2;A0A0C4DGH5;H0YH27;Q86VP6-3 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 111.65 0.0020901 438470000.0 1202700.0 1207310.0 1154930.0 968450.0 887540.0 1170190.0 1225090.0 1035930.0 1840750.0 1216120.0 False True 1196224.7968325324 1247494.5835156927 1317534.1051684823 1091055.6707025836 1000562.9581382716 1089297.519630964 1165827.7164017246 1113236.356945954 1387121.827286295 1138506.1804272858 1.050696796730242 1.095729302977963 1.1572480921219124 0.9583221325097296 0.8788384071509883 0.9567778711769015 1.0239977054531095 0.9778044037742089 1.218370045883899 1.0 20.118710692548902 3.7318123417410813 24.978194419306114 0.9945559815518022 1.1006751888255317 0.2171114721893228 0.08551212677478508 753.135739047394 2787671.6173659978 0.02307418837816067 0.036665457065974294 5392.775508142025 -3.7318123417410813 0.10611920727372948 HEMPPHIYAITDTAYR ddPTM_BT-474_Trastuzumab_2h_R1 4 HEMPPHIYAITDTAYR 16 0 P35579;P35579-2;Q5BKV1 P35579 MYH9 Myosin-9 0 ;;; 143.38 8.199899999999998e-07 1124640000.0 641360.0 704650.0 641570.0 624040.0 601120.0 713220.0 730170.0 577430.0 880900.0 698620.0 False True 637906.9890217943 728103.8492800801 731897.4793735925 703043.400015737 677669.0688826181 663916.7801392906 694848.887579726 620520.7587301278 663813.9984552491 654033.473481326 0.9753430288916364 1.1132516588248735 1.1190520195821287 1.0749348902182916 1.0361382044797849 1.0151113162532144 1.0624056959671275 0.9487599394984865 1.01495416575831 1.0 19.319004949288143 2.503309156196485 1.0513374123249553 0.9896195942760942 1.0751217132863455 0.30068919145379813 0.04467789554281434 0.5606013733698338 1.2544620698412055 0.02714677242501649 0.019711397944425814 318.6465026612131 -2.503309156196485 0.08550211901025129 HENAIK ddPTM_BT-474_Trastuzumab_2h_R1 3 HENAIK 6 0 P07384;E9PRM1;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PLX0;E9PIA9 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;; 116.11 0.023852 1092498000.0 1784390.0 1639140.0 1490100.0 1354740.0 1370600.0 1157050.0 1773110.0 1501530.0 2295300.0 1798860.0 False True 1774783.042504367 1693697.7840189473 1699893.1278186159 1526249.9450953794 1545137.785817332 1077065.8569027311 1687337.8953620242 1613581.7932148462 1729654.0704442395 1684055.2147184722 1.0538746158635077 1.0057258035343497 1.0094046281628546 0.9062944799886068 0.9175101696862337 0.6395668309977515 1.0019492713866278 0.9581525469665748 1.0270768175100424 1.0 20.68350800980369 3.804395071500295 4.11269734228868 0.9154777561640676 1.0248757357722373 0.16809986819348066 0.10316107857988706 0.41666643806772474 14.010865758573523 0.028259316619660593 0.05254110565640757 6373.750682802221 -3.804395071500295 0.10939797960816977 HENEALWR ddPTM_BT-474_Trastuzumab_2h_R1 3 HENEALWR 8 0 E9PMQ6;Q00613-2;Q00613;E9PI02 E9PMQ6 HSF1 Heat shock factor protein 1 0 ;; 138.98 0.00068231 467860000.0 77467.0 93502.0 83876.0 88598.0 91634.0 99535.0 100067.0 82458.0 102335.0 92142.0 False True 77049.92627939285 96614.15754684743 95685.01173673857 99814.49771584237 103303.04674272978 92654.37973018731 95226.37691693778 88611.43467323984 77115.91046874538 86261.41867326497 0.8932142255999432 1.1200158661057482 1.109244587075105 1.1571163476213255 1.1975579387815765 1.0741114759674562 1.1039277858115186 1.027242955612359 0.8939791584096209 1.0 16.396427822680216 1.5156634564480476 3.428096692257529 0.9476946900998892 1.1005388669622667 0.3481357611078435 0.079315600473341 0.21751804074082587 5.453881020969134 0.05408485667512177 0.0206744568181861 32.78411439395369 -1.5156634564480476 0.1528441768623775 HENVIGLLDVFTPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HENVIGLLDVFTPAR 15 0 Q16539-2;Q16539;B4E0K5;Q16539-5;Q16539-3;Q16539-4;E7EX54;B5TY33;H7C4E2 Q16539-2 MAPK14 Mitogen-activated protein kinase 14 0 84.559 0.0081923 0.0 38440.0 42036.0 25726.0 35829.0 31959.0 42974.0 36846.0 34728.0 43249.0 35977.0 False True 38233.04331108551 43435.14284870139 29347.99718559943 40364.94772636984 36028.7892141662 40003.3085299148 35063.618214611124 37319.579705210825 32590.863456908897 33680.91705854067 1.1351544628263182 1.2896068944086927 0.8713538629185718 1.1984515640180369 1.0697092704318207 1.1877143505441141 1.0410529545162677 1.1080333602658683 0.9676358693043555 1.0 15.039643799954856 7.999999998368589 0.06093845593887368 0.8378211886114624 1.6298135014662547 0.1476152106815628 0.10810492610756013 636.9838181458323 2.8950760439767595 7.510115218708103 44.60165686782674 99999999.62435384 -7.999999998368589 0.7919923128547923 HEPLVLFCESCDTLTCR ddPTM_BT-474_Trastuzumab_2h_R1 6 HEPLVLFCESCDTLTCR 17 0 Q13263;Q13263-2;M0R3C0;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;;;; 347.45 1.4313999999999994e-87 6134400000.0 2520040.0 2805580.0 2261890.0 2428240.0 2172580.0 2813800.0 2380340.0 2263720.0 3266670.0 2360350.0 False True 2506472.384642764 2898962.034291078 2580344.4512996757 2735654.9350269437 2449245.185109457 2619288.6289727343 2265193.860418157 2432650.281337246 2461642.9496353786 2209710.4422026984 1.134299017994523 1.3119194166459724 1.1677296726387008 1.2380151185328923 1.1084009643670707 1.1853537816302109 1.025108908912134 1.1008909741641602 1.1140115476766028 1.0 21.07542590230408 2.5057097000706396 0.49936495589090946 1.0308517374071098 1.2373060934969469 0.5163849891939897 0.061420050441891326 0.7461583516375926 0.38816410113010774 0.053173036642597774 0.05758811658507849 320.41268410497855 -2.5057097000706396 0.2064543560898371 HEPVGVCGQIIPWNFPLLMQAWK ddPTM_BT-474_Trastuzumab_2h_R1 2 HEPVGVCGQIIPWNFPLLMQAWK 23 0 P05091;P05091-2;F8VP50 P05091 ALDH2 Aldehyde dehydrogenase, mitochondrial 0 ; 163.85 1.4982e-11 298060000.0 217051.0 240911.0 229686.0 207893.0 228216.0 412170.0 244054.0 192306.0 308580.0 276090.0 False True 215882.42153263302 248929.57700122512 262023.79233349903 234212.23248425045 257277.95485779093 383677.65804381645 232248.1756431823 206656.8502300818 232534.59376015526 258469.69982745865 0.8352329951121746 0.9630899759909883 1.0137505189521747 0.906149667216694 0.9953892275556351 1.4844202562232258 0.8985508777168831 0.799539947498819 0.8996590080592953 1.0 17.97963563903569 2.0274690985248034 24.999995815285327 0.8703554198818236 1.0356436067104642 0.12231080924718762 0.16981712958814793 386.4016867856484 351667.75355618144 0.06592894979250881 0.04869079303081747 106.52930618794214 -2.0274690985248034 0.16528818682864055 HEQEYMEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HEQEYMEVR 9 0 Q15363;E7EQ72;F5GX39 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 0 93.258 0.0095211 910730000.0 1206600.0 1618500.0 1841400.0 1438300.0 926480.0 1196100.0 1676300.0 1026400.0 2351200.0 1546800.0 False True 1200103.799665863 1672370.7940960904 2100653.114264279 1620388.6325277798 1044461.7363228091 1113416.4223165426 1595210.9649121396 1102995.179953593 1771778.2644658627 1448081.899717894 0.8287540918090748 1.1548868847969793 1.4506452395223743 1.1189896323153086 0.721272558220833 0.7688905044206763 1.101602723729168 0.7616939208814582 1.2235345699791076 1.0 20.465711769104054 3.4193303381374225 10.795661421367576 0.9121183650031809 1.1688873310337522 0.19648432149113682 0.2038256335076916 0.691157065210306 125.89318797084076 0.056043945748612274 0.07590812174885371 2626.215366446999 -3.4193303381374225 0.2567689660305713 HEQILVLDPPTDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HEQILVLDPPTDLK 14 0 Q9P0L0-2;Q9P0L0;J3QKM9 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 107.5 0.00088031 327060000.0 321180.0 348690.0 328880.0 301460.0 354820.0 477410.0 343300.0 325950.0 481720.0 392740.0 False True 319450.80256645253 360295.9358624438 375183.4453237943 339624.80509060994 400004.2238170922 444407.7704022574 326693.2674666449 350274.0441405629 363006.5607172913 367674.9969583696 0.8688401583168373 0.9799304789366428 1.0204214276944017 0.9237092755835783 1.0879288151932265 1.2086972845003543 0.8885381659597459 0.9526730047956539 0.9873028183050291 1.0 18.488071546570527 7.004026039231123 10.675463837211558 0.9918233649632111 0.31528448183683566 0.0 0.09448921551977511 0.0 0.0 0.021422622412114452 0.0 10093134.002165597 -7.004026039231123 -0.6765388831263754 HEQNIDCGGGYVK ddPTM_BT-474_Trastuzumab_2h_R1 4 HEQNIDCGGGYVK 13 0 P27797 P27797 CALR Calreticulin 0 ;;; 181.26 1.2202e-05 23352500000.0 18963800.0 18826100.0 17524500.0 16376100.0 15658800.0 21379400.0 20366000.0 18488100.0 25388400.0 18377300.0 False True 18861701.007876247 19452715.357882246 19991797.27431537 18449312.580920648 17652855.36302091 19901492.399694268 19380818.774324782 19867775.902669568 19131769.007130448 17204444.980401915 1.0963272008694358 1.1306796226231886 1.1620134969241152 1.0723573240483375 1.0260636354808188 1.1567645699913387 1.1265006686587122 1.154804814994121 1.1120247720239742 1.0 24.03627801534267 3.7378138272065184 24.998090387166354 1.1040437934666392 1.1297740558819314 0.07044207645754752 0.05098344031926391 231.18724357096903 7738763.944746567 0.013738060373819054 0.022887441457198676 5467.815190568003 -3.7378138272065184 0.025730262415292193 HEQQQLLGVEEVTDPDVVLHNLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HEQQQLLGVEEVTDPDVVLHNLLR 24 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 0 ; 180.9 1.9834e-17 119230000.0 60747.0 65306.0 57313.0 59488.0 63127.0 66267.0 64984.0 49156.0 73177.0 58708.0 False True 60419.94490162617 67479.67073168936 65382.172226473616 67019.17470055795 71165.84926695676 61686.11826573893 61840.47565701269 52824.27032911035 55143.50887156279 54961.20517755249 1.0993198694686406 1.2277691239428956 1.1896058686350879 1.2193905589233738 1.2948378594875254 1.1223574531610354 1.1251659321740977 0.9611192141522596 1.0033169522651728 1.0 15.746126019160616 2.030020867510088 1.903211157282604 0.9833760277214395 1.2041136186444392 0.7512969668190813 0.05240873718684213 0.1558600619075727 1.0609900702771535 0.02980499489949791 0.015655260523473175 107.157079213887 -2.030020867510088 0.22073759092299972 HEQSGGPEHGPER ddPTM_BT-474_Trastuzumab_2h_R1 2 HEQSGGPEHGPER 13 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 0 ; 100.54 0.0013612 16441900.0 5102.1 5800.3 5094.6 5722.799999999999 4566.5 4797.1 3852.8 2730.3999999999996 5370.1 5346.3 False True 5074.6308604966 5993.359479144606 5811.87539694297 6447.305893228097 5148.0167072339555 4465.487768158754 3666.4253448747154 2934.1563126902674 4046.7108106533415 5005.094556802287 1.0138931048964515 1.19745179858774 1.1611919277417464 1.2881486693324784 1.0285553347313743 0.8921884926409296 0.7325386769949784 0.5862339421145473 0.808518353595052 1.0 12.28918160953577 2.6796527640506502 2.061289018856741 0.7325178684539032 1.1649021014640175 0.6617414561129658 0.12082033820238719 0.1667815000269194 1.400557514432823 0.044431631011644386 0.04217481914621242 478.2475612100168 -2.6796527640506502 0.4323842330101143 HERPAGPGT(ph)PPPDSGPLAK ddPTM_BT-474_Trastuzumab_2h_R1 4 HERPAGPGTPPPDSGPLAK 19 1 Q9P2K8-2;Q9P2K8;H0YME5 Q9P2K8-2 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 HERPAGPGT(1)PPPDSGPLAK;HERPAGPGT(1)PPPDSGPLAK;HERPAGPGT(1)PPPDSGPLAK;HERPAGPGT(1)PPPDSGPLAK 171.72 1.5727e-11 1663390000.0 1801900.0 1585820.0 1476980.0 1349640.0 1510220.0 1830040.0 1760050.0 1554330.0 2266950.0 1714290.0 True False 1792198.770609912 1638603.0600515676 1684925.9458596995 1520504.285618293 1702537.5652247597 1703533.6422507863 1674909.657456069 1670321.9973278125 1708290.5480737027 1604882.544522493 1.1167164704524541 1.0210112046169133 1.0498749279879682 0.9474240285108807 1.0608487026265978 1.0614693567856366 1.0436337931224815 1.0407752287098306 1.0644333779466566 1.0 20.614036284967344 HESGASIK ddPTM_BT-474_Trastuzumab_2h_R1 8 HESGASIK 8 0 P61978;P61978-2;S4R359;P61978-3 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;; 163.15 0.00033757 9276580000.0 4521520.0 8514190.0 9910160.0 10079170.0 10260270.0 8697310.0 11419390.0 10570130.0 9624740.0 10419550.0 False True 4497176.638708102 8797579.667213459 11305424.3873451 11355191.888559405 11566854.567115141 8096085.430965545 10866990.479393922 11358926.774632573 7252851.791908459 9754565.398374444 0.46103300916487133 0.9018935552658797 1.1589880149072658 1.1640899850291329 1.1857888173103752 0.829979102125321 1.1140414806388872 1.1644728709825953 0.7435340782191193 1.0 23.217646166240765 4.683259476889017 2.934611048987889 1.0609194675499773 0.3960542839870136 0.5927979027913037 0.14466448123962308 0.21763998182373795 2.8654774188932346 0.034892193445071246 0.3181505327261002 48223.58318641097 -4.683259476889017 -0.6648651835629638 HESQQDYSK ddPTM_BT-474_Trastuzumab_2h_R1 4 HESQQDYSK 9 0 Q14247 Q14247 CTTN Src substrate cortactin 0 ;;; 184.87 6.5223e-05 1508328000.0 1893129.0 3059372.0 3501543.0 3492423.0 3476445.0 3336899.0 3755821.0 3564258.0 3815206.0 3823812.0 False True 1882936.6038104037 3161201.3475905713 3994529.818442647 3934563.3937137993 3919149.6642461256 3106227.026345327 3574137.5896004713 3830241.0308953985 2874999.6024411987 3579773.044429839 0.5259932907591086 0.8830731189815038 1.1158611925574928 1.0991097326228592 1.094803948631425 0.8677161897675736 0.9984257508061477 1.0699675603332703 0.8031234289879704 1.0 21.77143669366993 4.678667303379878 3.0767176537435326 1.0124738012166974 0.481224023913661 0.6855834016928353 0.09750514222266357 0.16800434866720182 2.5105876946673393 0.02383431518625129 0.19954727188275526 47716.35965781003 -4.678667303379878 -0.5312497773030365 HESVSK ddPTM_BT-474_Trastuzumab_2h_R1 4 HESVSK 6 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 89.67299999999999 0.049899 257794000.0 465215.0 766260.0 853070.0 853930.0 902270.0 672290.0 1058880.0 920530.0 967270.0 1125070.0 False True 462710.33413024526 791764.5008860483 973174.8409826363 962037.4504445841 1017168.7363267228 625816.1747004332 1007657.9290855846 989224.622956626 728899.2692539548 1053267.0693791138 0.4393095992291931 0.7517224490392379 0.9239582906131388 0.913384153376875 0.9657272745898431 0.5941666581006306 0.9566974591540062 0.9391963840090054 0.692036512338348 1.0 20.006439865911787 4.682753422409567 2.707090044554856 0.8732776750317433 0.3830302395633035 0.5298513383157216 0.1232238264146755 0.29123617710460054 3.092222155950585 0.02959420824385854 0.3005560563819124 48167.42417729566 -4.682753422409567 -0.49024743546843974 HETWSGHVISS ddPTM_BT-474_Trastuzumab_2h_R1 4 HETWSGHVISS 11 0 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 0 ;;; 213.31 2.9686000000000003e-09 1329180000.0 718290.0 1153960.0 1214320.0 1213070.0 1125080.0 1259400.0 1246740.0 849220.0 1081540.0 1168110.0 False True 714422.8064495213 1192368.8610164481 1385285.7009413491 1366644.5376211316 1268352.2691283869 1172340.6423087153 1186430.4231906927 912593.1086517845 815008.9588935066 1093560.2197307136 0.6532999221802765 1.0903550069790082 1.266766727562998 1.2497204204791432 1.1598376077000272 1.0720403148876438 1.0849246358676508 0.8345156418331569 0.7452803642530088 1.0 20.060601237643166 1.7500933501716043 4.9610450687338945 0.8419764945697601 1.0999876742935217 0.25859730689437377 0.1699669720037641 0.2212982021818894 12.621499102527494 0.08865235741786029 0.046009201626263464 56.24622116017032 -1.7500933501716043 0.25801117972376164 HEVGHIDNSMK ddPTM_BT-474_Trastuzumab_2h_R1 2 HEVGHIDNSMK 11 0 Q969X5;Q969X5-2;F2Z2U2;F2Z3Q5;Q969X5-3 Q969X5 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 0 ; 126.19 0.00018075 1128040000.0 704940.0 900550.0 925790.0 570630.0 655960.0 923840.0 913730.0 283400.0 1302240.0 629710.0 False True 701144.6813661967 930524.2623560295 1056133.1848890663 642871.6994919885 739492.6178204713 859977.1152854399 869529.3891124312 304548.74707604083 981320.4011219915 589521.368678145 1.1893456600875032 1.5784402598373977 1.7915095889690686 1.090497704830392 1.2543949330939428 1.4587717442944004 1.4749751837870348 0.5166034061817227 1.6646053107834893 1.0 19.169184582683844 HEVLLISAEQDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 HEVLLISAEQDKR 13 1 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7C0A4;C9JIZ1 Q00341 HDLBP Vigilin 0 57.804 0.07257000000000001 207360000.0 120290.0 170430.0 136360.0 161710.0 157350.0 138190.0 152710.0 121420.0 137190.0 140500.0 False True 119642.37200547548 176102.65952288924 155558.30273763277 182182.46941949998 177387.5898134812 128637.2505642698 145322.83389114877 130480.97695826714 103381.36275181691 131533.16971189826 0.909598485823252 1.3388460105432958 1.1826545583776138 1.3850686470837787 1.3486148794408248 0.9779833546627706 1.1048379219436018 0.9920005519829275 0.7859718045133159 1.0 17.005067135129536 2.2111337235110144 1.3291638588802175 0.9265499497412997 1.2351910483919948 0.4099806572554965 0.14940597871251998 0.42631995432192876 1.4560712735118286 0.09247573695896497 0.052132327342713926 162.60493551484507 -2.2111337235110144 0.3086410986506951 HEVTICNYEASANPADHR ddPTM_BT-474_Trastuzumab_2h_R1 3 HEVTICNYEASANPADHR 18 0 X6R8S9;Q9GZP4-2;Q9GZP4 X6R8S9 PITHD1 PITH domain-containing protein 1 0 ;; 137.61 2.1848e-06 1042420000.0 119749.0 212958.0 222127.0 250717.0 253943.0 167744.0 176942.0 124284.0 137250.0 151176.0 False True 119104.28468936475 220046.1782941707 253400.55083750497 282457.7464934066 286281.1358119154 156148.25210690268 168382.63947591925 133558.70318136437 103426.57655577574 141527.81825171478 0.841560946537955 1.5547910016022917 1.7904646165520517 1.9957754594297525 2.022790567595334 1.103304311730325 1.1897494185661912 0.9436922354291019 0.7307862004332325 1.0 17.110726126853017 2.5897512606897792 5.764834165245884 0.9880633058873844 1.662733784707763 0.500758983288319 0.32463669365765807 0.2074191118605131 9.205164123994606 0.11317437587892361 0.10612423692892471 388.8223857424229 -2.5897512606897792 0.6746704788203786 HFADLLPGFLQAVNDSCYQNDDSVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HFADLLPGFLQAVNDSCYQNDDSVLK 26 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 209.2 1.9359e-25 276410000.0 210530.0 211840.0 167090.0 179840.0 177320.0 201880.0 192770.0 177820.0 322660.0 238590.0 False True 209396.5298720817 218890.96634001567 190614.81962768437 202607.7255605896 199900.65094201764 187924.51077440326 183444.9786470873 191089.8313516642 243144.76642248884 223362.9819328241 0.937471948395895 0.9799787075095847 0.8533859011830857 0.9070783520499535 0.89495873135387 0.8413413411131891 0.8212863969655363 0.8555125370287814 1.08856339720435 1.0 17.769030581443456 1.2421367711168472 24.99999649674779 1.0442817293663933 0.8832807155112984 0.6221869174636676 0.04917177590722243 56.3324140169832 393828.903824485 0.03863422073271639 0.012844915345993538 17.463720462726254 -1.2421367711168472 -0.1610010138550949 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVK 31 2 Q9UGI8-2;Q9UGI8;H7BYK1 Q9UGI8-2 TES Testin 0 70.449 0.0028126 411100000.0 104540.0 100360.0 83934.0 94103.0 93535.0 140630.0 118780.0 109820.0 176890.0 141030.0 False True 103977.16825548591 103700.42193109894 95751.17763259367 106016.43015140198 105446.12782462013 130908.57910741177 113034.15761633588 118015.32605466046 133297.8297045624 132029.34465814248 0.7875307457195158 0.7854346486351628 0.725226485676482 0.8029762658135239 0.798656753903058 0.9915112390080201 0.8561290515302491 0.8938567888845629 1.0096075993537978 1.0 17.01049909104878 2.8524472559905547 5.39307861138594 0.9314088812710337 0.7758642133409089 0.7378478740897285 0.05021070198048555 0.13117677710701797 5.371201192981308 0.015662344234635757 0.01667098516585886 711.9463305968138 -2.8524472559905547 -0.15554466793012478 HFCPNVPIILVGNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HFCPNVPIILVGNKK 15 1 Q5JR08;P08134;E9PQH6;Q5JR07;C9JNR4;C9JX21;Q5JR05;P61586 Q5JR08;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA 0 162.72 1.025e-06 516820000.0 1336000.0 1323600.0 1231600.0 1071400.0 1408600.0 1783100.0 1605800.0 1240500.0 2063900.0 1623700.0 False True 1328807.1244435539 1367655.225866904 1404998.5747408941 1207039.130146884 1587976.8605736867 1659838.4939659126 1528121.3192482926 1333072.4091313651 1555279.4998431003 1520074.0758804914 0.8741726114063568 0.8997293273847198 0.9242961228235271 0.7940659927692771 1.0446707076784156 1.0919457941577377 1.0052939810601926 0.876978583007011 1.0231603344345022 1.0 20.535710199770296 3.2275179236900122 24.999798213595092 0.9962946114390884 0.8786298201050474 0.538228284843759 0.06020277280583943 210.763440197453 477151.4590669836 0.019689987978796508 0.02374223292849031 1688.5655465358725 -3.2275179236900122 -0.11766479133404095 HFDETVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFDETVNR 8 0 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ; 123.98 0.0013243 707380000.0 211985.0 240797.0 206306.0 220066.0 203435.0 224328.0 234341.0 219955.0 347723.0 256071.0 False True 210843.69631374767 248811.7825801397 235352.09155610218 247926.33303612444 229341.24139628603 208820.73337131145 223005.0305604458 236369.15900885887 262031.32589948253 239728.32954658708 0.8795109727437275 1.0378906116383186 0.9817450111183691 1.0341970575819837 0.9566714198111388 0.8710724083643637 0.9302406227175107 0.9859875946072723 1.093034462781593 1.0 17.871040881885882 1.4255428478558805 6.1915595013278 1.0460241928577112 0.9599595072804422 0.28653409777901495 0.056283048993935124 0.2607617352969329 18.492910272538005 0.037703197486417164 0.014417244437825797 26.640529214851558 -1.4255428478558805 -0.08606468557726898 HFEALANR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFEALANR 8 0 F5H365;Q15436;Q15436-2 F5H365 SEC23A Protein transport protein Sec23A 0 ; 134.81 0.00086063 604050000.0 150034.0 195536.0 185273.0 161912.0 148180.0 174249.0 191175.0 132625.0 231450.0 171880.0 False True 149226.23361434453 202044.2975559918 211357.82797821538 182410.04259878866 167049.8446683296 162203.5767680254 181927.13489057941 142522.15095610407 174412.24877110592 160910.47124612844 0.9273867167170761 1.2556317559156551 1.3135119569373626 1.1336120091263329 1.038153970805358 1.0080361800688473 1.1306109135203757 0.8857232835898068 1.0839086320512055 1.0 17.295898686907822 3.279163517980773 3.5396842646163744 1.0145014196242381 1.1807377172637519 0.254341098977075 0.11096579997030767 0.2785023392684987 7.21479030184252 0.03213197649242522 0.04301888933319291 1901.794197402332 -3.279163517980773 0.16623629763951375 HFEANNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 HFEANNGK 8 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;Q9P2J5-3 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 112.84 0.0029633000000000003 178753000.0 172755.0 154407.0 154007.0 153044.0 145763.0 193580.0 196042.0 249520.0 268160.0 277980.0 False True 171824.90627488476 159546.3436539975 175689.8469471592 172419.3547080452 164325.05404501094 180198.2702383046 186558.69950683392 268140.44943688693 202075.56115990417 260239.07840934844 0.6602578956439786 0.6130760400366765 0.6751093956412043 0.6625421353392383 0.6314388102256205 0.6924335550975861 0.7168742705635568 1.0303619697542499 0.7764996801980879 1.0 17.989478092888312 1.892525591705629 5.072449360862487 0.9313144384959776 0.6575242177880011 0.7845922062542205 0.06566293763860843 0.09298882817008537 3.4928000458149726 0.028014015363638935 0.01653342764260145 78.07744475405954 -1.892525591705629 -0.27379022070797654 HFEELETIMDR ddPTM_BT-474_Trastuzumab_2h_R1 9 HFEELETIMDR 11 0 Q92922;F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 Q92922;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 0 ;;;;;;;; 244.27 7.2398e-16 5500339000.0 2253294.0 2616129.0 2427437.0 2548136.0 2373587.0 2505091.0 2691809.0 2255374.0 2833299.0 2347965.0 False True 2241162.5154685 2703205.2722816234 2769199.029939356 2870729.756333731 2675849.2350976244 2331919.955519916 2561595.914961034 2423681.460437118 2135070.4257114967 2198115.8635060317 1.019583431736764 1.229782886862918 1.2598057617956666 1.3059956501814554 1.2173376660999116 1.0608721743177199 1.165359823606043 1.1026177012213112 0.9713184191783337 1.0 21.067836002608622 1.6658288493123308 0.9066431644040321 0.9828660190128368 1.2062713662964943 0.4646875309107775 0.08224225845523207 0.49034403017491707 0.7722599283036364 0.07588188998024395 0.03107614692516464 46.32643163762549 -1.6658288493123308 0.22340534728365757 HFELGGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 HFELGGDK 8 0 H0Y5B4;H7BZ11;J3KQN4;P83881;R4GN19;Q969Q0 H0Y5B4;Q969Q0 RPL36A;RPL36A-HNRNPH2;RPL36AL 60S ribosomal protein L36a;60S ribosomal protein L36a-like 0 ;;; 144.9 0.00057798 5790100000.0 8572100.0 7651200.0 7439000.0 6845100.0 6203560.0 7912800.0 8568100.0 7328300.0 11440400.0 8229100.0 False True 8525948.766049841 7905865.566751924 8486346.539052878 7711688.958156088 6993546.594619128 7365806.760727651 8153628.269679469 7875174.95835339 8621066.71350599 7703911.792713027 1.1067038402638985 1.0262144452679118 1.101563305421012 1.0010095086304618 0.9077916236312805 0.9561125515085489 1.058375081266094 1.022230675823983 1.1190505480164612 1.0 22.877159754210634 3.726020081919979 24.165840654944624 1.0077212830385442 1.0729659215030982 0.2355911456217361 0.05662716567183693 777.9920797842364 1499204.6656093171 0.016014981111128045 0.02501938384337451 5321.328646969533 -3.726020081919979 0.06524463846455397 HFFHHADEDDEEEDDS(ph)PPER ddPTM_BT-474_Trastuzumab_2h_R1 1 HFFHHADEDDEEEDDSPPER 20 0 A0A087WZV0;O43314-2;O43314;D6RFG4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 HFFHHADEDDEEEDDS(1)PPER 132.48 2.0862e-05 885190000.0 221760.0 205260.0 128550.0 162600.0 145610.0 210170.0 189870.0 121180.0 256360.0 164970.0 True False 220566.0687998522 212091.95501770967 146648.72262336954 183185.14332824657 164152.5704019129 195641.44258696414 180685.26272616323 130223.06693957179 193183.51304800465 154441.47336207738 1.4281530990237983 1.3732836808703237 0.9495423698760095 1.1861136736165527 1.0628788163466203 1.2667675225313104 1.169927084951845 0.8431871575990005 1.2508525646805975 1.0 17.236700697116085 4.32565073957365 6.854480785793637 1.0859432923938375 1.4106461131137922 0.48473410881861156 0.12781335577643987 0.17365691271906855 11.27357644608696 0.031606140666550354 0.08776288140249308 21166.582301333427 -4.32565073957365 0.3247028207199547 HFFLYGEFPGDER ddPTM_BT-474_Trastuzumab_2h_R1 1 HFFLYGEFPGDER 13 0 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 0 128.9 5.3932e-05 0.0 122410.0 134710.0 113220.0 112240.0 111250.0 107920.0 115520.0 95899.0 138000.0 115270.0 False True 121750.95816102944 139193.7409160853 129160.39187411818 126449.57249177361 125417.02806958879 100459.74441635411 109931.8562707451 103055.47034525483 103991.74910526078 107913.3699123881 1.1282286732392446 1.2898655748503907 1.1968896159853035 1.1717692867383769 1.162201015234826 0.9309295455967561 1.0187046921062308 0.9549833392185114 0.9636595464462728 1.0 16.719514092843504 2.8328108907594514 4.3701801030996945 0.9734613437891142 1.1993909058693282 0.8569729076700898 0.04422147175838348 0.07715854622549448 2.568919235934483 0.013449219533977846 0.014271185839244287 680.4729889340257 -2.8328108907594514 0.22592956208021397 HFGAGGNQR ddPTM_BT-474_Trastuzumab_2h_R1 6 HFGAGGNQR 9 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;;;; 126.52 0.00047114 719582000.0 197020.0 207406.0 190535.0 193124.0 176220.0 183996.0 198743.0 178710.0 244552.0 194808.0 False True 195959.26621098 214309.38333042522 217360.67184009106 217573.47859855043 198660.57246222877 171276.7895999953 189129.0418180115 192046.24767099263 184285.43642891123 182375.18665648004 1.0744842530584315 1.1751016531327592 1.1918324845885384 1.192999347045876 1.0892960610722977 0.9391452463465353 1.0370327525654734 1.0530283817212969 1.010474285496027 1.0 17.476549929143324 3.005115119613509 5.601395078870869 1.0164538132099028 1.1606355037341707 0.7387508717128196 0.04213299775206942 0.08772973042150285 9.596684861996897 0.012971107851143842 0.014938767131909971 1011.8476319048664 -3.005115119613509 0.14418169052426788 HFGDEDQAMR ddPTM_BT-474_Trastuzumab_2h_R1 1 HFGDEDQAMR 10 0 A0A0G2JM25;A0A0G2JNK1;K7ERG0;A0A0G2JMB6;A0A0G2JPH3;A0A0G2JNK3;Q8WX94;Q8WX94-2;Q8WX94-3;Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8 A0A0G2JM25;Q9NX02 NLRP7;NLRP2 NACHT, LRR and PYD domains-containing protein 7;NACHT, LRR and PYD domains-containing protein 2 0 96.229 0.006882500000000001 455600000.0 80331.0 89536.0 91206.0 89159.0 100660.0 108430.0 111610.0 84541.0 119910.0 97758.0 False True 79898.50682161306 92516.15163434498 104047.0120232366 100446.52025832183 113478.45434143634 100934.48931676504 106210.9979083958 90849.87871049946 90359.78721168 91519.00074516535 0.8730264335390904 1.0108955613704327 1.1368897297398985 1.0975482625516766 1.239944201941377 1.102880150514505 1.1605349385767478 0.9926887091290576 0.9873336299124028 1.0 16.481783679613034 4.606767597910175 2.873082306436475 1.09363643659772 0.8622367355056534 0.4268801182315213 0.07661862387323107 0.3117476997051303 4.1029666709719725 0.02000321805398358 0.14203295135513078 40435.945070238704 -4.606767597910175 -0.23139970109206665 HFHPLFEYFDYESR ddPTM_BT-474_Trastuzumab_2h_R1 4 HFHPLFEYFDYESR 14 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;; 200.44 1.1124e-08 2781481000.0 2433386.0 3080328.0 2687254.0 2768330.0 2688429.0 2743303.0 2718733.0 326072.0 3045871.0 1688910.0 False True 2420284.9201506013 3182854.855382399 3065596.005169512 3118800.294156732 3030784.497582893 2553664.920650646 2587217.4982213606 350405.14840006636 2295256.9046303635 1581122.3178514028 1.5307385727370808 2.0130351835825078 1.9388734005951986 1.9725230989053963 1.9168564401149213 1.6150963728858356 1.6363171077979262 0.22161798897142515 1.4516630868568112 1.0 20.59251755025991 1.9157052126057723 7.054767860347666 0.825358659184878 1.8364871771482618 0.6390971403340538 0.3158052518066743 0.14352645150160853 10.343444416485106 0.1302438912153526 0.08075061470994076 82.35789020739915 -1.9157052126057723 1.0111285179633838 HFIDVGAGVIDEDYR ddPTM_BT-474_Trastuzumab_2h_R1 7 HFIDVGAGVIDEDYR 15 0 P33316-2;H0YNJ9;H0YNW5;P33316;A0A0C4DGL3;H0YKC5;H0YMM5;H0YKI0;H0YMP1 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 0 ;;;;;; 222.16 1.4381e-12 10483831000.0 5569620.0 5936400.0 5399111.0 5600079.0 5638849.0 6340140.0 6324940.0 5119480.0 7131660.0 6007797.0 False True 5539633.784762949 6133989.485370425 6159258.898885915 6309048.427210968 6356922.996073463 5901861.044884209 6018978.488582817 5501521.593792689 5374157.952348 5624374.251926208 0.9849333519841362 1.0906083433672085 1.0951011833496895 1.1217333955062248 1.1302453768783924 1.0493364738064805 1.0701596691438993 0.9781570975488616 0.9555121532866496 1.0 22.423261165412036 1.7717415634727514 3.0023698238452505 0.9721539289270381 1.0831949712805766 0.5665210595603754 0.039743823004786724 0.16827939051564722 2.994175906637694 0.023166621424195007 0.011169474503759746 59.12097170728365 -1.7717415634727514 0.11104104235353851 HFILDECDK ddPTM_BT-474_Trastuzumab_2h_R1 8 HFILDECDK 9 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ;;;;;;; 168.83 5.893e-05 7251460000.0 11131580.0 9587910.0 8088560.0 7696910.0 7995780.0 10091280.0 9430530.0 8769680.0 15348500.0 9231960.0 False True 11071648.810114803 9907037.788336016 9227358.940976145 8671338.016818045 9013995.18829894 9393693.565917956 8974339.235776918 9424118.053132722 11566067.834363023 8642768.408921404 1.2810303697003165 1.1462806035748434 1.0676392683912834 1.00330560840519 1.0429522997508927 1.0868847944856903 1.0383639606162829 1.090405019230271 1.3382364639580155 1.0 23.043062072695488 4.651036562314449 2.58030140776803 1.0810304985748433 1.303173793924176 0.30313502407905824 0.09086530001085268 0.4801903568911189 4.658017590957904 0.022325379412938978 0.2111150829271379 44775.09977791259 -4.651036562314449 0.22214329534933275 HFIMQVVCEATQCPDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFIMQVVCEATQCPDTR 17 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ; 202.41 1.0611e-11 3972900000.0 625970.0 621950.0 630160.0 654450.0 527430.0 760100.0 623020.0 596760.0 806430.0 682470.0 False True 622599.8470718056 642651.2297732849 718881.0505510905 737303.3028977296 594595.0841774677 707556.0760829404 592882.1424324758 641293.2614858791 607696.1321083739 638914.1803080372 0.9744655327130695 1.0058490632708228 1.1251605813546026 1.1539942696877636 0.9306337259423447 1.1074352360465833 0.9279527058651788 1.0037236318290743 0.9511389022785309 1.0 19.285262634155412 2.233115090565693 24.99952153695254 0.9729808018708218 1.0503751302851905 0.24540762933991855 0.06771134396799058 204.5295463966013 938952.6785267376 0.025156287087484186 0.019115481982959738 171.04685391534846 -2.233115090565693 0.07739432841436866 HFKDEDEDEDVAS(ph)PDGLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFKDEDEDEDVASPDGLGR 19 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR 246.77 6.633399999999999e-25 1503270000.0 921780.0 886880.0 758790.0 824620.0 889440.0 1396770.0 1018640.0 821680.0 1714340.0 903190.0 True False 916817.238899385 916399.2646697186 865621.0364790872 929016.8074498074 1002704.91187609 1300214.5775429134 969364.491617312 882997.9340064977 1291863.8779790786 845547.6409401384 1.0842880927205996 1.0837937690309236 1.0237401118127771 1.098716101220343 1.185864478033684 1.5377188872495047 1.1464339141665696 1.0442911685315797 1.5278428032070375 1.0 19.689526517554352 3.208071165436122 4.010212773066313 1.2386689496451155 1.0674863713896792 0.1993095717729737 0.1673857664824192 0.379255954618323 13.210787698072295 0.04963082151551541 0.06293909185718019 1614.623114514797 -3.208071165436122 -0.17118257825543637 HFLLDPLMPELLVFPAQTDLHEHPLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFLLDPLMPELLVFPAQTDLHEHPLYR 27 0 Q96P11-2;Q96P11-5;Q96P11;Q96P11-4;Q96P11-3 Q96P11-2 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase 0 ; 120.67 3.4566e-05 544740000.0 77381.0 106844.0 91804.0 91641.0 88238.0 90974.0 91897.0 30014.0 100972.0 55981.0 False True 76964.3892938373 110400.23795143806 104729.20522532721 103242.74120383666 99474.58627239878 84685.18150976097 87451.5910293687 32253.797088003863 76088.80355548109 52408.244652254616 1.4685549917674312 2.1065433250813643 1.9983345353434143 1.9699713640265022 1.8980713231752813 1.6158751752071472 1.6686609446593346 0.615433646023027 1.4518479689666106 1.0 15.67750616809221 1.9075119499330127 5.517180436298285 1.001714769656139 1.8536584678607158 0.6717846478820192 0.2568662131907059 0.12246320058781264 5.658242290457866 0.11221026871721305 0.06743718605918644 80.81871666726181 -1.9075119499330127 0.8519436982045767 HFLLEEDKPEEPTAHAFVSTLTR ddPTM_BT-474_Trastuzumab_2h_R1 5 HFLLEEDKPEEPTAHAFVSTLTR 23 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 240.41 1.9148e-37 14136440000.0 6846970.0 5355410.0 5064390.0 4576590.0 4818130.0 7105070.0 6881440.0 5168900.0 9200300.0 6172940.0 False True 6810106.674289877 5533661.584436297 5777412.091533004 5155985.824751658 5431690.296206095 6613913.234435751 6548558.45754637 5554629.565142365 6933009.342703849 5778977.684280182 1.178427577738281 0.9575502600553059 0.9997290882864219 0.8921968739863507 0.939905047735559 1.1444780713423999 1.1331690162707464 0.9611785801235947 1.1996947767358286 1.0 22.462382868232243 2.7459380710250927 24.950315572616695 1.0787922954835105 0.9862723767252214 0.1913074064998881 0.09532044420486038 993.4526778174576 3359823.026724787 0.02936069778970261 0.030618875835362172 557.1063017282429 -2.7459380710250927 -0.09251991875828913 HFLPEMLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HFLPEMLSK 9 0 D3DQV9;P78344;H0Y3P2;P78344-2;E9PKF8 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 72.643 0.042277 0.0 925680.0 968990.0 917690.0 880740.0 760680.0 1023300.0 1016300.0 924290.0 1285800.0 1000200.0 False True 920696.241732716 1001242.2463831764 1046892.7752955272 992241.5936956921 857548.0890964034 952561.6795890969 967137.6863569793 993265.21324952 968931.8188372776 936366.379685699 0.9832649502449641 1.069284703194121 1.1180375524022206 1.0596723838256006 0.915825373166696 1.0172959006802809 1.0328624642435464 1.0607655665541085 1.0347785224438637 1.0 19.83671360972882 1.5932050032814034 0.003784689961752127 5.256570764851674e-09 2.056636074419625 0.021231929398982552 0.051811425400624216 34881.79517558186 134.65178343277557 36569.83257618069 36592.86045696983 39.19268376147232 -1.5932050032814034 2.056636069163054 HFLQQATQVNAWDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFLQQATQVNAWDR 14 0 P37198 P37198 NUP62 Nuclear pore glycoprotein p62 0 ; 225.21 2.8607e-12 2650900000.0 940930.0 1097220.0 1057800.0 1056860.0 914660.0 1087320.0 1070370.0 943140.0 1290440.0 1090610.0 False True 935864.1374271504 1133740.3044165042 1206729.0454375767 1190658.3676377034 1031136.529385438 1012156.127675967 1018592.1138895216 1013521.8959678788 972428.3530100929 1021006.3360818025 0.9166095295927423 1.1104145629177267 1.181901622734782 1.1661615854480931 1.0099217732012427 0.991331877097062 0.9976354483738605 0.9926695458691804 0.9524214675707775 1.0 19.961560388532476 3.0932113140447326 6.979291890561555 0.989058558449408 1.1008964899839402 0.35617431485687046 0.06816017917312317 0.2419450279595366 15.446165345206802 0.02041013697592891 0.024464088837032646 1239.3994926788787 -3.0932113140447326 0.11183793153453214 HFLVEDK ddPTM_BT-474_Trastuzumab_2h_R1 3 HFLVEDK 7 0 P53992;P53992-2 P53992 SEC24C Protein transport protein Sec24C 0 ;; 111.01 0.0066756 945850000.0 1725870.0 1516300.0 1391020.0 1407170.0 1411370.0 1748780.0 1696830.0 1497530.0 2474760.0 1665600.0 False True 1716578.107682184 1566769.1288772947 1586863.5250374146 1585317.5777196079 1591099.6036546128 1627890.9547853232 1614747.8503799222 1609283.2929032566 1864888.558085037 1559299.9820080956 1.100864572236795 1.0047900641027265 1.017676869972013 1.0166854332147213 1.0203935240258035 1.0439883111451684 1.0355594619454942 1.0320549679163027 1.1959780540004872 1.0 20.572467073320663 1.3895069764193566 24.996961239552363 1.103334335632983 1.0318776756211814 0.2022075374918192 0.0504761616409536 27.510217744398236 7844.255655801941 0.029954093320760274 0.01093870030307839 24.519238407054246 -1.3895069764193566 -0.07145666001180162 HFMLQIALK ddPTM_BT-474_Trastuzumab_2h_R1 1 HFMLQIALK 9 0 A1E5M1;Q9NP56 A1E5M1 PDE7B cAMP-specific 3,5-cyclic phosphodiesterase 7B 0 84.476 0.015466 167690000.0 134050.0 321740.0 270310.0 324020.0 395010.0 249220.0 222630.0 187400.0 84707.0 220290.0 False True 133328.28969435513 332448.92140406265 308367.29842336086 365040.8987774805 445312.1820922994 231992.0080007762 211860.53637081047 201384.73959791838 63832.09486564736 206230.90360024257 0.6465000509952589 1.6120228132660503 1.4952526175276777 1.7700591541075474 2.1592892933034484 1.1249138899690265 1.0272977166481332 0.9765012715469744 0.30951760260615124 1.0 17.653901010489914 2.385751312470883 2.9875260170231344 0.8382503620682629 1.556073923200792 0.4004106597441669 0.4042429239659208 0.26766089259463643 4.844623679834299 0.15577299189480356 0.12611494381814112 243.08116688871934 -2.385751312470883 0.7178235611325292 HFNALGGWGELQNSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 HFNALGGWGELQNSVK 16 0 P09960-4;P09960;P09960-3;P09960-2 P09960-4 LTA4H Leukotriene A-4 hydrolase 0 ; 146.3 1.1375e-06 595470000.0 1721330.0 1897430.0 1818150.0 1733260.0 1759840.0 2053950.0 2104740.0 1756940.0 2426810.0 2084930.0 False True 1712062.55053774 1960584.8105293429 2074129.7163569017 1952690.5382848473 1983945.1926111039 1911965.2709782308 2002925.6853123994 1888051.7843605469 1828755.1930879587 1951867.9824016213 0.8771405474007421 1.0044658902171222 1.0626383213709192 1.000421419835072 1.0164341085046202 0.9795566545569884 1.0261583792403601 0.9673050643709246 0.9369256576655446 1.0 20.896424046622815 4.73984924977269 24.802490832790365 0.9999490378596717 0.8771405027468081 0.5644981643297782 0.03219112639363818 76.035975036799 1463295.0517361716 0.007956466448020116 0.049560236666161106 54935.015295588564 -4.73984924977269 -0.1228085351128636 HFPNIDR ddPTM_BT-474_Trastuzumab_2h_R1 5 HFPNIDR 7 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;; 133.12 0.0033029000000000005 1367700000.0 964964.0 1280710.0 1117320.0 1158810.0 1097780.0 1195281.0 1182202.0 987253.0 1344180.0 1153551.0 False True 959768.7410415795 1323337.6581444566 1274628.9440804615 1305515.2271845338 1237575.7759481645 1112654.0378588235 1125014.372809794 1060926.832029156 1012924.8500891984 1079930.3875753013 0.8887320442908241 1.225391630210223 1.1802880618465643 1.2088883155846033 1.145977361306421 1.0303016293087137 1.041747121623012 0.9824029810024951 0.937953836416673 1.0 20.04250688843822 2.4491190437686963 1.736172282393782 0.9816701630679778 1.1422034810362909 0.34409305593895867 0.09100773740935296 0.383414811783469 2.3481671595072076 0.040494421805669145 0.031088299231853866 281.267170170313 -2.4491190437686963 0.16053331796831305 HFS(ph)QSEETGNEVFGALNEEQPLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFSQSEETGNEVFGALNEEQPLPR 24 0 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 HFS(0.991)QS(0.006)EET(0.003)GNEVFGALNEEQPLPR;HFS(0.841)QS(0.158)EET(0.001)GNEVFGALNEEQPLPR 262.14 2.7455999999999997e-44 1145460000.0 399130.0 407710.0 358940.0 371220.0 397090.0 425090.0 385830.0 327220.0 443760.0 377730.0 True False 396981.12842751184 421280.38088410045 409475.6320375913 418216.41393795575 447657.05776317307 395704.52885422594 367165.9288862672 351638.8179894918 334401.29407935205 353622.94800907694 1.1226113312570483 1.191326477130344 1.157944172862562 1.1826619745481586 1.265916310814994 1.1190012726325353 1.0382977998272969 0.994389136704063 0.9456436466073703 1.0 18.431852374462107 2.219547201544257 2.218632928276726 0.983000186942637 1.1835299958555028 0.8524720820826024 0.037571865644090284 0.1102736897068371 1.0995793870510415 0.017745997790852223 0.011801472288952031 165.785751224977 -2.219547201544257 0.20052980891286576 HFSEHPSTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 HFSEHPSTSK 10 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 ; 114.89 0.00074891 192635000.0 123288.0 254100.0 281680.0 354940.0 343070.0 300770.0 332210.0 243530.0 258630.0 324260.0 False True 122624.23110658453 262557.56489330635 321338.09559354937 399875.3676071816 386757.9309647981 279978.47783642384 316139.73313455895 261703.44522028297 194894.10196444645 303565.449187047 0.40394660009883904 0.8649125438894301 1.058546341337915 1.3172624509082111 1.2740512202575813 0.9223002109963784 1.04142198653103 0.8620989177824052 0.6420167462613939 1.0 18.2116480717677 -2.2247166194721784 8.873718863544266 5.6195025143730115 0.9531701137731003 0.00012888943541189413 0.25882806169448724 0.2808644085911188 0.007112566957574378 0.002975639089364763 0.061113794880779386 0.00596050944545372 2.2247166194721784 -4.666332400599911 HFSGLEEAVYR ddPTM_BT-474_Trastuzumab_2h_R1 5 HFSGLEEAVYR 11 0 P50990-2;P50990;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;;; 248.09 3.4629e-16 4334850000.0 1145874.0 2387350.0 2894830.0 3115950.0 2633260.0 2528160.0 2922060.0 2333190.0 2297790.0 2752510.0 False True 1139704.7417025687 2466811.501566449 3302396.901686576 3510428.950514452 2968590.052445172 2353394.249848497 2780708.7944467943 2507304.485498759 1731530.443308533 2576842.45525763 0.4422873192643911 0.9573000850452924 1.2815672510162854 1.3622986315488517 1.1520262119200357 0.9132860431753509 1.0791147859168526 0.973014271936963 0.6719582098531578 1.0 21.297172904749697 1.4486543509417567 6.072721110671696 0.8292092940585849 1.0450476804086126 0.08113074737359494 0.24735056429499572 0.4047563363066566 32.687505775913536 0.16083439018739515 0.06486635930991126 28.09663767199415 -1.4486543509417567 0.21583838635002772 HFSQS(ph)EETGNEVFGALNEEQPLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFSQSEETGNEVFGALNEEQPLPR 24 0 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 HFS(0.295)QS(0.6)EET(0.105)GNEVFGALNEEQPLPR;HFS(0.392)QS(0.585)EET(0.023)GNEVFGALNEEQPLPR 258.11 4.0968e-44 968360000.0 794510.0 761410.0 739950.0 833570.0 813970.0 878040.0 767740.0 643040.0 858830.0 764870.0 True False 790232.44643836 786753.0715679355 844128.5282393027 939099.8765321417 917624.2547218261 817343.1614838367 730601.4831483894 691026.910090958 647182.8542323996 716055.3417618474 1.1035913013287502 1.0987322147924168 1.178859340902803 1.311490637331879 1.2814990702590394 1.1414525020828301 1.0203142697752263 0.9650467914821959 0.9038168092427219 1.0 19.44971156779219 2.196634138671479 2.505455335616677 0.9572596406210279 1.196254314062891 0.72043477001122 0.0666021656692114 0.16822721644567856 2.143816294910428 0.03378400942801508 0.022833001262654026 157.2657457411299 -2.196634138671479 0.2389946734418631 HFSTLKDDDLVEFS(ph)DLES(ph)EDDERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFSTLKDDDLVEFSDLESEDDERPR 25 2 Q9HCK8-2;Q9HCK8;H0YJG4;A0A2R8Y840 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 2 HFSTLKDDDLVEFS(1)DLES(1)EDDERPR;HFSTLKDDDLVEFS(1)DLES(1)EDDERPR 195.91 4.7492e-25 239370000.0 103630.0 134693.0 106632.0 133187.0 132488.0 170660.0 149595.0 105170.0 186937.0 127126.0 True False 103072.0675943753 139176.17508136205 121644.85873804081 150048.46054402925 149359.56148210046 158862.67589042836 142358.51834160424 113018.319442439 140868.88117746476 119012.70984195573 0.8660593287158238 1.1694227890969175 1.022116536121062 1.2607767753821235 1.2549883258724566 1.3348379017786576 1.1961623135096313 0.9496323509692616 1.1836456909899218 1.0 16.86075612735503 4.7407972377886 24.192030269563954 1.1516409434958426 0.8660591832674129 0.3450513604350073 0.11834445935591201 161.97714839727448 1751809.488441869 0.030358213474009313 0.20215452010844415 55055.05968470019 -4.7407972377886 -0.2855817602284296 HFSTLKDDDLVEFS(ph)DLESEDDERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HFSTLKDDDLVEFSDLESEDDERPR 25 2 Q9HCK8-2;Q9HCK8;H0YJG4;A0A2R8Y840 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 HFSTLKDDDLVEFS(1)DLESEDDERPR 191.22 3.7819e-18 109130000.0 45222.0 74186.0 74714.0 101350.0 85290.0 91851.0 86636.0 58996.0 102930.0 76618.0 True False 44978.529776636555 76655.2361636159 85233.08177427031 114180.8996083505 96151.17594656389 85501.55656399687 82445.08569834038 63398.581095617905 77564.28069133703 71728.17364403 0.6270692182942561 1.0686907566340356 1.1882789905855122 1.591855665738868 1.3404938542522982 1.1920219381065091 1.1494100784929486 0.8838727918857952 1.081364222045723 1.0 16.130252276620922 1.8947110905514881 6.131294532242857 0.981467150179269 1.1898922279409216 0.10517618814203744 0.23144889711853012 0.5111276180658023 25.068440216497137 0.10910508975963704 0.06632963886561276 78.47134392756834 -1.8947110905514881 0.20842507776165264 HFSTLKDDDLVEFSDLES(ph)EDDERPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HFSTLKDDDLVEFSDLESEDDERPR 25 2 Q9HCK8-2;Q9HCK8;H0YJG4;A0A2R8Y840 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 HFSTLKDDDLVEFS(0.02)DLES(0.98)EDDERPR;HFSTLKDDDLVEFSDLES(1)EDDERPR;HFSTLKDDDLVEFSDLES(1)EDDERPR 194.64 7.294199999999998e-19 372423000.0 107817.0 228394.0 218589.0 257007.0 288834.0 280923.0 316396.0 241321.0 294754.0 252069.0 True False 107236.52525159469 235995.9562229115 249364.43119035193 289544.05984847853 325615.2978467561 261503.45423161116 301090.716729906 259329.5984232086 222115.82620124685 235981.74061287197 0.4544272153137314 1.0000602402965697 1.0567107037295493 1.2269765410514346 1.3798325963741744 1.1081512220075007 1.2759068390119441 1.0989392558496243 0.9412415792187406 1.0 17.84831570797993 4.885377286141579 1.648386013831112 1.1585749701501322 1.1593737974160804e-10 0.7307925090522844 0.12369118538550064 0.7374691085003997 1.4526391071449247 0.03267909652399221 1.5176906471493883 76802.84115992169 -4.885377286141579 -1.1585749700341947 down HFSVEGQLEFR ddPTM_BT-474_Trastuzumab_2h_R1 17 HFSVEGQLEFR 11 0 P08238;Q58FF7;P07900;P07900-2;Q14568;Q58FG1 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P;HSP90AA4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4 0 ;;;;;;;;;;;;;;;; 257.54 1.5687e-20 4529930400.0 2148269.8 3369188.3000000003 3621353.1 3738114.6 3527388.1 3636490.4 3682609.7 3093539.3000000003 3755329.3 3667693.4 False True 2136703.7540920116 3481329.695848161 4131208.1391145857 4211359.525082472 3976580.0660677184 3385108.3780256296 3504467.799875798 3324394.91124027 2829878.7128495267 3433618.067141705 0.6222892914443154 1.013895438506407 1.2031647254680207 1.2265078534457365 1.1581311573706854 0.9858721359896451 1.020634133252063 0.9681900683868554 0.8241681682451194 1.0 21.711298141778673 1.7299683079013706 1.9504825858593162 0.9115578351696112 1.0544755390468665 0.0717076140001206 0.16490631184474633 0.7693985966614594 5.956243298482195 0.1221705047407689 0.04992044463541472 53.69926085739818 -1.7299683079013706 0.14291770387725533 HFTEDIQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFTEDIQTR 9 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;A8MPP7;A8MPY5;E7ETV6;Q9UPE1-2;Q9UPE1-3;Q9UPE1-4;Q9UPE1;H7C2I2;P78362;P78362-2;H7C521 H3BLV9;P78362 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 0 ; 148.56 8.9729e-05 854990000.0 578960.0 727780.0 623030.0 703370.0 631930.0 690490.0 688930.0 578860.0 834420.0 720890.0 False True 575842.9436885037 752003.7173477004 710747.2085261605 792416.5698818495 712402.5397574402 642758.0515386251 655603.8239318251 622057.4725915209 628788.3716551578 674882.1830150197 0.8532495866403516 1.1142740707543086 1.0531426468408376 1.174155415307821 1.055595417521321 0.9524003858971638 0.971434482094239 0.921727507774015 0.9317009508919928 1.0 19.364276141317863 2.741467016626922 6.178585547645345 0.9493274086629647 1.061032146329904 0.25558235894390513 0.07937529137522104 0.1852999542610413 34.351044252778294 0.024653570033376444 0.024767830155758352 551.4003235783301 -2.741467016626922 0.11170473766693922 HFTEFVPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFTEFVPLR 9 0 P38606;P38606-2 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 ; 156.62 7.0502e-05 434670000.0 458760.0 580760.0 516030.0 469080.0 479590.0 482010.0 446950.0 475840.0 603350.0 492380.0 False True 456290.08713302755 600090.2455231657 588682.5385868339 528465.4799041437 540662.943747363 448689.7832294934 425329.32098519354 511349.5970665612 454662.4769757908 460955.8868522737 0.9898779908179338 1.3018387716468875 1.2770908353221526 1.1464556478774408 1.1729168867749675 0.9733898536223461 0.9227115503169662 1.1093243662824455 0.9863470452249592 1.0 18.814269166816796 2.7822602628588182 6.469633884108949 1.0074040085912077 1.1892409007234734 0.49347802353186976 0.09022819544076631 0.18976920702754735 21.50494437073465 0.027955121998612244 0.029402991077403736 605.7037505674956 -2.7822602628588182 0.18183689213226573 HFTILDAPGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 HFTILDAPGHK 11 0 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1;H3BSV8 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ; 168.22 1.0595e-05 2476130000.0 1417770.0 2304800.0 2174700.0 2333500.0 2125100.0 2149100.0 2079300.0 1644380.0 2026860.0 2268900.0 False True 1410136.8838490562 2381513.8747189757 2480878.8571687425 2628920.8607408553 2395718.8885454647 2000537.7754372412 1978716.315302636 1767091.9855924482 1527367.5115325274 2124096.8594969814 0.6638759798284332 1.1211889251053055 1.1679687986339062 1.2376652453426367 1.1278764797537564 0.9418298259294066 0.9315565372905011 0.8319262738380596 0.7190667905296143 1.0 21.0184181243221 2.3538863829071897 2.027745447078656 0.8447476740896611 1.0798409961326048 0.23866019032343344 0.16026167873565858 0.4229425493488559 3.5593041323600985 0.07203582081186112 0.052865347793159524 225.88447497088146 -2.3538863829071897 0.23509332204294364 HFVALSTNTTK ddPTM_BT-474_Trastuzumab_2h_R1 2 HFVALSTNTTK 11 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;K7EQ48;A0A0J9YX90 P06744 GPI Glucose-6-phosphate isomerase 0 ; 206.97 2.4573e-08 5636900000.0 5982700.0 5589100.0 5273600.0 4931800.0 3885800.0 6255500.0 6814000.0 5160900.0 8040100.0 6179700.0 False True 5950489.807940461 5775129.814817697 6016077.041047083 5556165.374331156 4380633.597058945 5823072.008863078 6484380.78799219 5546032.56451919 6058725.086820352 5785306.255292658 1.0285522572805348 0.9982409850013297 1.0398891217804254 0.9603926100278833 0.757199948239792 1.0065278745677242 1.1208362188362953 0.9586411366633237 1.0472609088373772 1.0 22.463961902260596 2.4912553349157216 24.99418206720947 1.029037499129035 0.9557537717458738 0.1565060800748046 0.08257517869595005 1360.6138807566724 2406062.1117255315 0.0287884043807837 0.026145142810204813 309.9240901528452 -2.4912553349157216 -0.07328372738316113 HFVDEK ddPTM_BT-474_Trastuzumab_2h_R1 4 HFVDEK 6 0 Q15257;Q15257-2;A6PVN5;F6WIT2;Q15257-3;Q15257-4;A6PVN9;H0Y6E5;H0Y562 Q15257 PPP2R4 Serine/threonine-protein phosphatase 2A activator 0 ;;; 134.12 0.014171 3424260000.0 7777400.0 7242140.0 6668940.0 6047550.0 5815710.0 7479600.0 7984300.0 6734620.0 10478200.0 7339900.0 False True 7735527.342550377 7483190.2519339295 7607868.784534386 6813169.209930724 6556306.196086188 6962552.857084539 7598068.906012036 7237191.5421074275 7895988.010686545 6871461.297995465 1.1257470583159621 1.089024579694121 1.1071689782715861 0.9915167843437108 0.9541356505928057 1.0132565047140187 1.1057428073164781 1.0532245221578491 1.1490988114842404 1.0 22.712185507259505 3.773121201816044 23.608515023841 1.040768957277987 1.105484694745559 0.255264012186584 0.05398757827336532 513.6734564831094 350890.27738672873 0.014889683163862712 0.02684048320718617 5930.908197861463 -3.773121201816044 0.06471573746757198 HFVDSHHQKPVNAIIEHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HFVDSHHQKPVNAIIEHVR 19 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 135.38 2.6527e-06 970010000.0 400030.0 513240.0 403710.0 468930.0 486070.0 478120.0 499430.0 358330.0 625460.0 505890.0 False True 397876.2829275108 530322.8831398682 460548.8588897745 528296.4899195239 547968.133337393 445068.6897734185 475270.66289212526 385070.4041628716 471323.76373461133 473603.6670857802 0.8401038897687558 1.1197609309131782 0.9724351623450559 1.1154822621418548 1.1570183497716537 0.9397492475344508 1.0035198118642168 0.8130646591744544 0.9951860521579198 1.0 18.853320726151114 2.5259668309735543 23.343475322217202 0.9320625642964329 1.0459425035239809 0.16072416099538311 0.09912737035677786 262.85707819148337 125619.61670834324 0.03146387427620753 0.02966342381413027 335.71197342773877 -2.5259668309735543 0.11387993922754802 HFVGMLPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HFVGMLPEK 9 0 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 63.159 0.07789299999999999 629210000.0 947510.0 979510.0 1246100.0 652090.0 378400.0 654930.0 981040.0 559300.0 1912000.0 723280.0 False True 942408.7114382564 1012112.3982237014 1421540.048704637 734644.5271397063 426586.9970474821 609656.2306393886 933583.3472632614 601037.8060678527 1440813.219487383 677119.6511688386 1.3917905200528118 1.494731981971873 2.099392694113641 1.0849552599331134 0.6300023877775678 0.9003670615481396 1.3787568351497659 0.8876389941280628 2.127856158066396 1.0 19.369051263769588 3.69956481264057 24.586405634943944 1.1094741934756558 1.6452478802135873 0.2415716455395569 0.41691412725311194 571.0024807212175 360010.36489476234 0.10939068798562451 0.1694708265662193 5006.852675305922 -3.69956481264057 0.5357736867379315 HFVGMLPEKDCR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFVGMLPEKDCR 12 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ; 113.77 0.00067906 4932600000.0 4031630.0 5134100.0 4774000.0 4579700.0 3991110.0 4975900.0 5594900.0 4131990.0 7862700.0 4937600.0 False True 4009924.1520362003 5304985.414871012 5446137.703648128 5159489.550432775 4499354.201337677 4631927.745008686 5324253.312406446 4440340.0756200785 5925042.939782133 4622478.140707967 0.8674836375585435 1.1476496488220307 1.1781857129158888 1.1161739208663 0.9733640840210805 1.0020442723606415 1.1518179535600783 0.9605973117571103 1.2817892825934853 1.0 22.140235066591984 -0.9498520371050245 5.50147495277278 1.0000097901700131 1.0717765363715677 0.03493082811376058 0.11756137114237414 1.6221073520182517e-07 3.064122643007353e-08 0.1067231372605374 0.025154842707535704 0.11224007879249362 0.9498520371050245 0.07176674620155454 HFVLDECDK ddPTM_BT-474_Trastuzumab_2h_R1 4 HFVLDECDK 9 0 O00148;O00148-2;O00148-3;K7EQN7;K7EPJ3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 ;;; 172.59 5.6072e-05 5159400000.0 6202900.0 5122460.0 4765200.0 4455280.0 4338110.0 5916100.0 5283380.0 4566590.0 8523800.0 5013760.0 False True 6169504.275606985 5292957.984507538 5436098.740139095 5019317.991189854 4890542.594507539 5507133.932001418 5027802.724928405 4907372.134474158 6423223.703068279 4693777.544304105 1.314400654350071 1.1276542048590559 1.1581500590576126 1.06935574679733 1.0419204038423608 1.173283965850559 1.0711634024986205 1.045505903966252 1.3684550753503124 1.0 22.16231803808463 5.197159444014151 1.5164062403132386 1.1081928778026218 1.7281116770128473 0.2619470423594268 0.0986971552935673 5.163682763895015 4.277607377490001 0.024802123882004812 6.750794357808202 157456.08322519204 -5.197159444014151 0.6199187992102255 HFWGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HFWGLR 6 0 P62269;J3JS69 P62269 RPS18 40S ribosomal protein S18 0 ; 112.88 0.061925 542290000.0 533120.0 514880.0 424520.0 429850.0 394170.0 430780.0 438030.0 339040.0 607820.0 436090.0 False True 530249.7411551997 532017.4695484677 484288.7260060128 484268.9659264866 444365.2130713692 401001.1925470445 416840.8154629031 364340.8864102359 458030.9053707223 408258.3628445672 1.298809257600137 1.303139183338709 1.186230999976826 1.1861825990588666 1.0884411772369464 0.9822240743656593 1.021022110994952 0.8924272460009554 1.1219143244962861 1.0 18.639122912975314 3.405880918069468 0.9797313952646345 0.9824867526025609 1.3034284806821823 0.7955853931880179 0.05874399798202673 0.2291268906531829 0.45880083426118007 0.02379388605701417 0.048466382159819216 2546.1320169400415 -3.405880918069468 0.3209417280796214 HFWTAES ddPTM_BT-474_Trastuzumab_2h_R1 1 HFWTAES 7 0 Q14157-4;Q14157-1 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 114.6 0.013655 74701000.0 312450.0 330160.0 323250.0 318590.0 248650.0 312190.0 302370.0 248360.0 407720.0 310830.0 False True 310767.8039164581 341149.1760140652 368760.7902606322 358923.4613342316 280314.10363598453 290609.0401162119 287743.2079344292 266893.88434652623 307242.8691680938 290992.56328504824 1.067957890085454 1.1723638987979392 1.2672515960464747 1.2334454780641255 0.9633033245643348 0.998682017284199 0.9888335450434311 0.9171845539058825 1.0558444026871132 1.0 18.150622757986604 3.234056886256091 24.99999209399829 0.9793834876490496 1.1901908752770731 0.733880698691193 0.05824806596308951 55.681788064036006 309086.80276666355 0.017357537025590123 0.02142012595778663 1714.1818256735103 -3.234056886256091 0.21080738762802353 HFYWYLTNEGIQYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HFYWYLTNEGIQYLR 15 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 176.89 7.7549e-07 39813000.0 37276.0 43495.0 43606.0 49037.0 43971.0 42661.0 49029.0 37205.0 56456.0 40948.0 False True 37075.31015775295 44942.704781717286 49745.34576985345 55245.079172123085 49570.44621346417 39711.94548319208 46657.279961031556 39981.426023161956 42543.17527164209 38334.66358265342 0.9671484419790154 1.1723777015759187 1.2976596406695324 1.441125968224792 1.2930972018727978 1.0359278462837975 1.217104197626092 1.0429575294682827 1.109783451729391 1.0 15.226361898645274 2.740482888383271 24.98858032533061 1.0916871764049247 1.2458550116722056 0.26887506762002844 0.12492785560410022 252.8804592018423 3287336.3883298263 0.041339982988777176 0.04190015892805482 550.1522435606516 -2.740482888383271 0.15416783526728084 HGAGAEISTVNPEQYSK ddPTM_BT-474_Trastuzumab_2h_R1 4 HGAGAEISTVNPEQYSK 17 0 P78356;P48426-2;P48426;H7BXS3 P78356 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 0 ;;; 199.08 1.362e-11 3057960000.0 1973710.0 1836800.0 1751220.0 1716570.0 1704600.0 2106190.0 2086140.0 1917000.0 2547500.0 2064590.0 False True 1963083.764659796 1897936.7776309506 1997776.5541228896 1933887.5859961142 1921670.7060442343 1960594.0427379631 1985225.4383713005 2060056.2743287575 1919702.7597511031 1932826.098615572 1.0156546241102065 0.9819490635967655 1.0336038796008806 1.000549189283662 0.9942284551210644 1.014366498953155 1.0271102194828912 1.065825981863716 0.9932102847359786 1.0 20.882280409692235 2.331393618135168 3.6443305584602688 1.0312922360624746 1.0052262514598895 0.03896095434487101 0.022894500619233194 0.3605773612541181 9.31209542292801 0.008373633445388273 0.006726140611912738 214.4833667386704 -2.331393618135168 -0.026065984602585024 HGALAELCPPGGSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGALAELCPPGGSHR 15 0 Q9BV36-2;H7C2D8;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 67.648 0.031793 200540000.0 99913.0 159910.0 161650.0 169100.0 184830.0 165140.0 121700.0 122120.0 145190.0 159660.0 False True 99375.07950937795 165232.5076823636 184408.91491301195 190508.04266178652 208367.00492676048 153724.26049774574 115812.90606085253 131233.21451279506 109409.86994632466 149470.36210819683 0.6648480548768825 1.1054533176467254 1.2337490343371498 1.2745539649116782 1.3940355933300692 1.0284598118954824 0.7748218738977782 0.877988202221652 0.7319837083630422 1.0 17.18949992087726 2.4251134657383835 5.360871506774506 0.8416635361394306 1.1523698962686169 0.33480783624462573 0.1906163055153664 0.21791738695236426 13.641110469958981 0.0689797339445 0.057850145393372514 266.14203036657915 -2.4251134657383835 0.3107063601291863 HGCHTVIAS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 HGCHTVIASR 10 0 G3V0I9;A0A0J9YXZ6;A0A0J9YWI0;Q9NUI1-2;Q9NUI1-3;Q9NUI1 G3V0I9 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase 1 HGCHT(0.075)VIAS(0.925)R;HGCHT(0.099)VIAS(0.901)R;HGCHT(0.099)VIAS(0.901)R 65.305 0.04468 1559800000.0 618140.0 637660.0 560360.0 567610.0 591430.0 712920.0 634130.0 508530.0 640150.0 739390.0 True False 614812.0029218099 658884.1276263903 639253.8172635658 639469.3678016359 666745.104819748 663637.518433166 603454.709288155 546479.0908630175 482393.6100705268 692201.497176373 0.8881980253289682 0.9518675274672319 0.9235082846125134 0.9238196831560724 0.9632240143072982 0.9587345897694166 0.8717905288413362 0.7894797874494839 0.6968976693033833 1.0 19.40083253637732 1.9980313122714097 3.8926728304466165 0.8087523051273159 0.9355042313354566 0.2894038731066533 0.07327144598739688 0.21927072845064843 7.3134577939436 0.030621775359716035 0.019171165595255515 99.54771878425755 -1.9980313122714097 0.12675192620814069 HGDEIITSTTSNYETQTFSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 HGDEIITSTTSNYETQTFSSK 21 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;; 249.5 1.0906999999999999e-30 1171550000.0 632626.0 564542.0 534765.0 541397.0 561106.0 694514.0 673795.0 656317.0 789953.0 702846.0 False True 629220.0119073563 583332.4391971546 610055.2637392946 609937.8046893143 632559.5231641775 646503.8818901023 641200.9617031395 705294.7072501981 595279.6679778848 657989.7665432657 0.9562762886312798 0.8865372515771459 0.9271500785554859 0.9269715665847036 0.9613516126357324 0.9825439767650123 0.9744847022039176 1.0718931252615795 0.904694416609506 1.0 19.327705620901753 2.93933610963829 1.4283379952825923 1.0004261569002173 0.9192302697291657 0.3169365234723266 0.04171269232073273 0.39896863979049507 1.6722519827437528 0.01605481419477712 0.018229831040370497 869.6331963485467 -2.93933610963829 -0.08119588717105164 HGDEIYIAPSGVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGDEIYIAPSGVQK 14 0 Q96GX9 Q96GX9 APIP Methylthioribulose-1-phosphate dehydratase 0 ; 137.68 1.9823e-05 1192000000.0 1079380.0 1076320.0 973760.0 971140.0 955080.0 1146830.0 1109540.0 1016270.0 1454790.0 1054830.0 False True 1073568.7380103914 1112144.6605508206 1110856.9439263518 1094086.2244267731 1076703.77679733 1067552.3414474374 1055867.3113455914 1092109.2279144968 1096276.4976872636 987509.8463146022 1.0871473758129724 1.1262112116667564 1.1249072078340103 1.107924370080881 1.090322066980497 1.0810548830794495 1.0692220591886754 1.1059223682581603 1.1101423462040199 1.0 19.913435607584475 -4.999999999998695 0.25993285495380664 0.35752205192355435 1.1084630221410223 0.7419545732870696 0.017691660960551643 103.58015618289448 1.0178055374755641 35.56656994843835 0.025185562818186347 1.0000000000030043e-05 4.999999999998695 0.750940970217468 HGDGTTLDIMLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGDGTTLDIMLK 12 0 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ; 158.41 6.3993e-05 771070000.0 1187190.0 1132630.0 1043530.0 949480.0 978140.0 1343330.0 1312140.0 1043840.0 1609570.0 1162960.0 False True 1180798.3009492094 1170328.9048607068 1190449.9534746385 1069684.0706476222 1102700.3311100008 1250468.7589586836 1248666.7753384302 1121736.641312119 1212913.0406330058 1088738.8971398505 1.084555997816558 1.0749399217160291 1.0934209814694653 0.9824982587264165 1.012823491478836 1.1485478862229523 1.146892775318963 1.0303082256535103 1.1140531892627006 1.0 20.054226575750654 2.760126999527256 24.714652615881377 1.089750900381222 1.0497541793205094 0.11348371448097883 0.05342382678046713 1644.1845820480034 1884199.1429615738 0.016798572677324108 0.01780481529001691 575.6082362437094 -2.760126999527256 -0.039996721060712614 HGDLPDIQIK ddPTM_BT-474_Trastuzumab_2h_R1 4 HGDLPDIQIK 10 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 140.49 3.9207e-05 2838070000.0 4304560.0 4285130.0 3933200.0 3953440.0 3903600.0 5053460.0 4703040.0 4432630.0 6557900.0 4707020.0 False True 4281384.727241577 4427757.961634211 4486960.372012743 4453945.098644661 4400700.321550084 4704126.204765287 4475535.987842503 4763415.359039064 4941793.4163579 4406613.953717427 0.9715815299930671 1.0047982437624123 1.018233142076704 1.010740932930443 0.9986580099301973 1.0675149341813521 1.0156405881815296 1.0809695174274656 1.1214491371972792 1.0 22.07123908258289 2.593610420513428 1.0555271245741675 1.068987506773128 0.9986451278510333 0.3784810139145749 0.0343668184218634 0.4999843498091677 1.145774379955073 0.019105540200965887 0.01521760716308495 392.2928751484789 -2.593610420513428 -0.07034237892209472 HGDPGDAAQQEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 HGDPGDAAQQEAK 13 0 O14737;O14737-2;Q3HM38;X6R2P6;K7ESJ4 O14737 PDCD5 Programmed cell death protein 5 0 ;; 177.81 1.5126e-05 2244460000.0 4063200.0 3427430.0 3116140.0 3060480.0 3006080.0 4189080.0 4126200.0 3644620.0 5522610.0 3827260.0 False True 4041324.1826639557 3541509.9356248165 3554865.426025572 3447936.454201915 3388886.469567902 3899498.7596336277 3926599.9423852945 3916600.051405366 4161636.764682647 3583000.9901178614 1.1279160105761004 0.9884200270646087 0.9921474863752789 0.9623040751904722 0.9458234811864861 1.088333151564481 1.0958969738537891 1.0931060477537102 1.1614947291839155 1.0 21.77273701154375 2.6515116808569306 7.937771684028467 1.0945100129726393 0.9996991434656277 0.3379965263306044 0.0586268947811652 0.32105702634173916 26.39469623173611 0.0186662761178289 0.017585859883167753 448.2411058021488 -2.6515116808569306 -0.09481086950701156 HGDTALHVACQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGDTALHVACQR 12 0 O00221;Q7LC14 O00221 NFKBIE NF-kappa-B inhibitor epsilon 0 51.841 0.088408 52624000.0 13375.0 14135.0 16933.0 18732.0 18689.0 16587.0 17563.0 15763.0 18915.0 17692.0 False True 13302.990486102193 14605.474930212054 19317.01921572553 21103.469279364763 21068.933371618386 15440.37973159811 16713.41059282459 16939.31510289214 14253.651698014564 16562.88141311676 0.8031809293500745 0.8818196886107895 1.1662837361395142 1.2741423882110356 1.2720572493463074 0.9322278742737541 1.0090883449535915 1.0227275484492249 0.8605780203634477 1.0 14.015666057145177 -0.7715271448740249 7.319013022936377 1.000015704137717 1.0350916573396687 0.0 0.15800291088056845 0.0 0.0 0.16243470187039666 0.03828622639752423 0.16922824677527432 0.7715271448740249 0.03507595320195178 HGEAQVK ddPTM_BT-474_Trastuzumab_2h_R1 5 HGEAQVK 7 0 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 0 ;;;; 128.57 0.0037452 2502970000.0 4572080.0 3777540.0 3413190.0 2929630.0 3124140.0 2946140.0 4542250.0 3824770.0 5985760.0 4438460.0 False True 4547464.429285847 3903273.1353288437 3893737.484020685 3300520.857618271 3521980.71077146 2742480.2762675835 4322524.014419945 4110193.75918853 4510649.653074682 4155193.6828432134 1.094404924627778 0.9393721287759583 0.9370772534859011 0.7943121571555413 0.8476092763891396 0.6600126216958981 1.0402701641243917 0.9891701982893149 1.0855449823432166 1.0 21.986484295120032 HGEEGVEAEKK ddPTM_BT-474_Trastuzumab_2h_R1 5 HGEEGVEAEKK 11 1 Q9H993 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 ;;;; 186.81 2.508e-06 1800173000.0 3342907.0 2221687.0 2044437.0 1878027.0 1859080.0 2962979.0 2891189.0 2675340.0 5283990.0 2665638.0 False True 3324909.1601438834 2295634.508756847 2332275.9590350376 2115785.025641554 2095822.8183695364 2758155.235832329 2751331.142655467 2874987.4559012526 3981821.4663384543 2495514.700672494 1.3323540667774403 0.9199042218177346 0.9345871448509333 0.8478351279883826 0.8398358934951383 1.1052450362600783 1.10251049289112 1.1520619193814 1.5955912683124764 1.0 21.250905971871187 1.8964161526510197 1.6292820126025305 1.2861862076662676 0.9731225160111769 0.26251456154573793 0.19212642546504596 0.4552762005282862 2.2612038527197704 0.12864698093279742 0.05773824567844861 78.78003195826356 -1.8964161526510197 -0.3130636916550906 HGEIDYEAIVK ddPTM_BT-474_Trastuzumab_2h_R1 3 HGEIDYEAIVK 11 0 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 ;; 117.67 0.00082313 1846900000.0 3606310.0 3293200.0 2930040.0 2825320.0 2995660.0 3784760.0 3714500.0 3164900.0 4909300.0 3460120.0 False True 3586894.0276587093 3402812.1712185573 3342564.1636357666 3183005.2223134153 3377139.5443320805 3523128.449566721 3534815.4442320215 3401080.9090365577 3699468.796249687 3239292.179242229 1.1073079639570504 1.0504801613834602 1.0318810340898905 0.9826236863443479 1.0425547797056387 1.087622929522489 1.0912308148315675 1.0499457044446592 1.1420608551325888 1.0 21.627247172231204 2.7836690219533944 8.370394967521133 1.0763362101843295 1.0393439237169233 0.1087874848442919 0.043838271121831335 0.7085531617325969 123.58077734632352 0.01321362063052901 0.013969822529748072 607.6717150417185 -2.7836690219533944 -0.036992286467406155 HGESAWNLENR ddPTM_BT-474_Trastuzumab_2h_R1 9 HGESAWNLENR 11 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ;;;;;;;; 244.95 6.567999999999998e-16 23208140300.0 6266899.1 6731552.5 6336969.6 6262155.4 6024927.2 7900872.0 7958085.8 5901005.6 8693355.4 7066635.0 False True 6233158.811563546 6955608.155653088 7229159.837752827 7054943.631566746 6792165.966378684 7354703.315292152 7573122.787014003 6341368.60257128 6550994.446664233 6615636.304249394 0.9421858344237919 1.0513891386661207 1.092738401158684 1.066404395150195 1.0266837011605219 1.1117151815869981 1.1447308223624069 0.9585425061075463 0.9902289281616585 1.0 22.65744849360387 1.651066550779778 10.924336806865242 0.9811170294399296 1.0634973141088895 0.3274778915931038 0.05196556009463776 0.12982046028210265 25.071272136458287 0.025301426718721525 0.013656275466094546 44.77819164977136 -1.651066550779778 0.08238028466895986 HGEVCPAGWKPGSDTIKPDVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGEVCPAGWKPGSDTIKPDVQK 22 2 Q06830;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 ; 212.65 1.0367e-23 17379900000.0 10108300.0 6183000.0 5911600.0 5607800.0 5350200.0 8912500.0 9006200.0 8222200.0 12614200.0 8331000.0 False True 10053878.035937702 6388797.417297577 6743901.895451675 6317746.905019308 6031516.25688013 8296399.852768326 8570535.698974945 8835782.315485606 9505599.431620149 7799308.447472058 1.2890730125177192 0.8191492182064345 0.8646794700929586 0.8100393704863719 0.7733398797472983 1.0637353181559819 1.0988840557720037 1.132893047504679 1.2187746510655237 1.0 22.894914777448612 2.553283312587933 5.76471360036396 1.119298070576457 0.8982362390839218 0.30744683189616806 0.14435858612114186 0.25439955877255704 14.70637856185761 0.04692541318450875 0.0437844227534245 357.5059816046799 -2.553283312587933 -0.22106183149253522 HGFCGIPITDTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 HGFCGIPITDTGR 13 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 ;;; 111.79 0.00095162 1924060000.0 1825880.0 2175800.0 2043130.0 2112940.0 2092140.0 2233080.0 2214650.0 2022610.0 2719690.0 2213630.0 False True 1816049.6649543408 2248220.1877011238 2330784.9447956844 2380437.9873553813 2358561.6279146946 2078712.435704893 2107518.918715423 2173547.4288054747 2049458.841478891 2072354.2382160067 0.8763220261598198 1.0848628802170965 1.1247039245578732 1.1486636519268971 1.1381073681423648 1.0030681035952425 1.0169684698932977 1.048830064244509 0.9889519869166647 1.0 20.982839200744476 2.7117379947837406 24.76957250386722 1.0178324253394728 1.0820116777138016 0.1486118968295569 0.07352541465482586 1336.5227926403704 1234221.028984991 0.024566748158363367 0.023167436769583934 514.9179063926618 -2.7117379947837406 0.06417925237432875 HGFELVELSPEELPEEDDDFPESTGVK ddPTM_BT-474_Trastuzumab_2h_R1 3 HGFELVELSPEELPEEDDDFPESTGVK 27 0 Q6PD74;Q6PD74-2;H0YL49 Q6PD74 AAGAB Alpha- and gamma-adaptin-binding protein p34 0 ;; 239.96 3.8037e-45 248455000.0 264276.0 259164.0 233127.0 208071.0 195581.0 306796.0 269926.0 226977.0 335774.0 263257.0 False True 262853.167379824 267790.1170720535 265949.25522379053 234412.76726599957 220487.08105059093 285587.9146401018 256868.6481625445 243915.17630585213 253026.99684108584 246455.71287434295 1.0665330671958957 1.0865648596613706 1.079095518306717 0.9511354576938391 0.8946316499589835 1.1587798526127517 1.042250736113026 0.9896917115904466 1.026663143207775 1.0 17.910968897685592 3.789104980062624 23.03572265222078 1.0107874739831406 1.0783147003708142 0.1929539589721332 0.0640024537261779 268.5349389880852 122383.48481572108 0.01711429883006193 0.03085311825939138 6153.255946380009 -3.789104980062624 0.06752722638767361 HGFLEEFITPIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGFLEEFITPIVK 13 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 ; 138.98 4.2839e-05 683790000.0 920810.0 1384710.0 1269400.0 1184580.0 1168730.0 1466020.0 1461100.0 1373940.0 1879400.0 1329350.0 False True 915852.4612716084 1430799.2352751275 1448120.4861774046 1334547.7065422758 1317560.8378945675 1364677.488039878 1390421.0110559717 1476470.3795259548 1416247.052669761 1244509.7448862065 0.7359142546170666 1.1496890572005563 1.1636071891986797 1.0723481371086427 1.0586986910376026 1.0965582982756468 1.117243972390997 1.186387158150343 1.1379959526144632 1.0 20.247146096424128 4.741543695010033 24.97345514533572 1.1170774021722825 0.7359141138966127 0.8167468078521098 0.05292157960738921 110.8899717355597 928291.2990204268 0.012884049231735884 0.09083366142813293 55149.76865882919 -4.741543695010033 -0.3811632882756698 HGGLSLVQTTDYIYPIVDDPYMMGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGLSLVQTTDYIYPIVDDPYMMGR 25 0 P49903;P49903-2;P49903-4;Q5T5U6;P49903-3;Q5T5U7 P49903 SEPHS1 Selenide, water dikinase 1 0 164.27 1.6902000000000002e-11 113670000.0 107660.0 132110.0 141370.0 130360.0 125430.0 127460.0 156360.0 128060.0 156350.0 114480.0 False True 107080.37052215042 136507.20148781867 161273.66718993222 146863.5626338882 141402.76701814408 118648.99020856648 148796.26944679476 137616.48747550396 117819.63748266338 107173.78838874088 0.9991283515494328 1.273699507501588 1.504786474515207 1.3703309815006681 1.3193782653763046 1.1070709731581265 1.3883643723321673 1.2840498553278838 1.099332581725187 1.0 16.70959258186055 1.1171707595040923 3.3381834122766243 1.004436995204457 1.2922761933843594 0.328734415260169 0.1349431623023105 0.2504412642836748 5.08982079041649 0.12879055959200847 0.03404791298879169 13.096967792102735 -1.1171707595040923 0.28783919817990244 HGGPGPGGPEPELS(ph)PITEGSEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGPGPGGPEPELSPITEGSEAR 23 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 HGGPGPGGPEPELS(1)PITEGSEAR 206.0 9.3282e-25 121010000.0 85624.0 78393.0 74979.0 83754.0 67695.0 85504.0 79296.0 58890.0 80821.0 71537.0 True False 85163.00989772081 81002.26361543081 85535.39147084906 94357.24781250895 76315.55699029939 79593.30973476612 75460.14953986336 63284.67083736076 60903.747495915115 66971.44741409303 1.2716316159504069 1.2095044491809093 1.2771919194455033 1.4089175530145859 1.1395237812082892 1.188466321216421 1.126751062632462 0.9449500239417487 0.9093987041871658 1.0 16.03125852804701 2.091834649980924 1.2535667752460147 0.9321611627274344 1.270308820845059 0.7972047542800527 0.06770804520258784 0.19343595282309395 0.5703044720552303 0.04772640780070156 0.023948123564423537 123.54769576702293 -2.091834649980924 0.3381476581176246 HGGPKDEER ddPTM_BT-474_Trastuzumab_2h_R1 4 HGGPKDEER 9 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;; 160.75 3.9088e-05 2266920000.0 2825010.0 2507110.0 2256350.0 2158950.0 2083980.0 2326710.0 2869290.0 2355780.0 3767990.0 2551220.0 False True 2809800.460048115 2590557.6407700023 2574024.467454224 2432272.8486378705 2349362.500282803 2165870.0141862095 2730491.4809477674 2531580.2660084516 2839419.3529792177 2388398.9553906694 1.1764368150079503 1.0846419250532062 1.0777196421245259 1.0183695831670738 0.9836558063217369 0.9068292419479556 1.1432308973276795 1.059948657360873 1.1888379646836578 1.0 21.18761241216208 -0.34287014871008326 6.96528484646991 1.0000019988885755 1.065415160751457 0.058757101698041936 0.08259092477436211 0.0 0.0 0.08093080581280093 0.01907557386570774 0.4540773626011183 0.34287014871008326 0.06541316186288149 HGGS(ph)PQPLAT(ph)TPLSQEPVNPPSEAS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 HGGS(1)PQPLAT(0.5)T(0.5)PLSQEPVNPPSEAS(0.97)PT(0.03)R;HGGS(0.98)PQPLAT(0.51)T(0.51)PLSQEPVNPPS(0.001)EAS(0.93)PT(0.069)R 251.17 3.2508999999999987e-46 2499400000.0 662690.0 649200.0 682300.0 743690.0 681360.0 740150.0 625020.0 633100.0 738250.0 605900.0 True False 659122.1506717802 670808.2295503124 778361.9093420851 837841.077747747 768127.1572628758 688985.1726256905 594785.3947917337 680345.1368166603 556318.17954318 567230.9432629119 1.1619996378904822 1.1826016149464407 1.372213414283561 1.4770722360952144 1.3541700543421313 1.214646663424963 1.0485771304546945 1.199414709118434 0.9807613391876019 1.0 19.11357671024819 2.4454692183755804 3.7371603804762783 1.0869756972418039 1.314219629158328 0.5661551644125693 0.10270668116095832 0.19946542483651752 6.0109292355008614 0.04013141947017374 0.03407152066001891 278.9132963093747 -2.4454692183755804 0.22724393191652403 HGGS(ph)PQPLATT(ph)PLSQEPVNPPSEAS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 HGGS(1)PQPLAT(0.398)T(0.602)PLSQEPVNPPSEAS(0.829)PT(0.171)R 173.23 6.2191e-12 777300000.0 90775.0 85148.0 79023.0 80402.0 92955.0 94278.0 86566.0 68356.0 99879.0 82714.0 True False 90286.27748605066 87982.09970694694 90148.75151977084 90580.88495619722 104792.26826254946 87760.78376654035 82378.47186576645 73457.07182473474 75265.15876003151 77435.12170498191 1.1659602968021416 1.1362040605056152 1.1641842814327363 1.169764868470137 1.35329119339148 1.1333459783391044 1.0638386051696036 0.9486273180353091 0.9719770189912313 1.0 16.240700447429077 2.1305660473288643 2.4861274350336173 0.9720830749506224 1.1934541628959303 0.7324562088362052 0.05883408602906887 0.15104611731349335 1.854974824922552 0.02909768544450894 0.018417081446358913 135.0722229525397 -2.1305660473288643 0.2213710879453079 HGGS(ph)PQPLATTPLS(ph)QEPVNPPS(ph)EASPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 HGGS(0.998)PQPLAT(0.117)T(0.029)PLS(0.856)QEPVNPPS(0.535)EAS(0.375)PT(0.09)R 91.504 0.0013374 155660000.0 39618.0 40706.0 35569.0 34437.0 35974.0 42681.0 41275.0 36943.0 46625.0 36468.0 True False 39404.70108997361 42060.874602703385 40576.80602870972 38796.72066909484 40555.07566539673 39730.56293026699 39278.3705641881 39699.87425275292 35134.89349299119 34140.581018174424 1.1541895279695704 1.231990591499092 1.1885212500369877 1.136381382860525 1.1878847534494978 1.1637342349011808 1.150489224049193 1.1628353434178245 1.0291240642415387 1.0 15.059199990489974 1.2064504030760128 3.194769921587177 0.9990328185546021 1.174110643418368 0.8640929870209819 0.02511451193436637 0.07919311410091395 1.4290224421265723 0.023453384350533853 0.006523022020857275 16.086086624591637 -1.2064504030760128 0.17507782486376577 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EAS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 3 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 HGGS(1)PQPLATTPLSQEPVNPPS(0.999)EAS(0.816)PT(0.185)R;HGGS(1)PQPLATTPLSQEPVNPPS(1)EAS(0.946)PT(0.055)R;HGGS(1)PQPLATTPLSQEPVNPPS(1)EAS(0.828)PT(0.172)R 158.2 5.2472e-12 2018990000.0 341258.0 340557.0 211727.0 297413.0 326844.0 329995.0 331387.0 282827.0 350341.0 337714.0 True False 339420.70484532835 351892.2338739459 241536.32123592496 335065.4553055581 368465.6460438356 307183.22237467393 315356.5447887243 303932.98690640565 264004.1548788855 316160.8033884979 1.0735698454948848 1.1130166361626468 0.7639666860889315 1.059794420163559 1.165437467563193 0.9716043832201668 0.9974561723301754 0.9613240593045093 0.8350312627289145 1.0 18.27029899247384 1.6704670524027712 2.399513331395753 0.9146944826808246 1.021871037469642 0.1309573444905341 0.10792064680549748 0.5336244156558025 6.798700065435546 0.0744905351062389 0.030412757054370066 46.823842728346925 -1.6704670524027712 0.10717655478881738 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EASPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HGGS(1)PQPLATTPLSQEPVNPPS(0.556)EAS(0.372)PT(0.072)R 173.21 1.1201e-12 314980000.0 51101.0 62453.0 54193.0 57054.0 53448.0 55691.0 60654.0 46092.0 60115.0 56004.0 True False 50825.87789385483 64531.71035136428 61822.903345999744 64277.03055012159 60254.28598888431 51841.21225251282 57719.934299218985 49531.619090433596 45300.463749730094 52429.776772563346 0.9694086265965595 1.2308217643439197 1.1791563335122162 1.2259642231350858 1.1492378891915396 0.9887742318148011 1.1008998674475379 0.9447230589078845 0.8640216788684852 1.0 15.678098782931823 2.2182645554143963 1.116666864493516 0.9320344991185017 1.159598701939589 0.4978864884860075 0.08645317807649601 0.39195570860593065 0.933760117230202 0.0586209378581308 0.03251561650379006 165.2968416079106 -2.2182645554143963 0.22756420282108736 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 6 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HGGS(1)PQPLATTPLSQEPVNPPS(0.012)EAS(0.916)PT(0.072)R;HGGS(1)PQPLATTPLSQEPVNPPSEAS(0.993)PT(0.007)R;HGGS(0.999)PQPLATTPLSQEPVNPPS(0.041)EAS(0.785)PT(0.174)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.01)EAS(0.956)PT(0.034)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.002)EAS(0.95)PT(0.048)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.001)EAS(0.995)PT(0.004)R 256.93 7.552999999999998e-54 37973300000.0 2828630.0 3053220.0 2776670.0 2704230.0 2911350.0 3123610.0 2870540.0 2717500.0 3028230.0 2915920.0 True False 2813400.970370339 3154844.5819895365 3167601.0007517054 3046585.2407290544 3282093.1655766033 2907682.19288703 2731681.0136723095 2920293.649185393 2281963.29270307 2729823.489155291 1.0306164415197812 1.1556954486334803 1.1603684316350722 1.1160374481471624 1.2023096653008158 1.065153920917713 1.000680455906544 1.0697738006822706 0.8359380384001291 1.0 21.38037623858174 1.9403785920798333 1.1550439988425703 0.9466972607254637 1.133080755764707 0.5383848394192804 0.06821280705897878 0.36926837084524294 0.9078315496829681 0.051685959011606934 0.023031932561438807 87.17231752059874 -1.9403785920798333 0.18638349503924323 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HGGS(0.995)PQPLAT(0.001)T(0.001)PLS(0.002)QEPVNPPS(0.121)EAS(0.467)PT(0.412)RDR 81.347 0.001235 259590000.0 55080.0 60913.0 59900.0 55129.0 64129.0 59168.0 62587.0 51344.0 54017.0 53603.0 True False 54783.45539996331 62940.45238231389 68333.39933986648 62108.32574749631 72295.44802763747 55077.85542649042 59559.42770444193 55175.54999954916 40705.234140716464 50182.01064816284 1.0916951053249384 1.254243334799861 1.3617110685135163 1.2376611647339422 1.4406646344746292 1.097561750019413 1.1868681014402995 1.0995085546969636 0.8111519170905657 1.0 15.614882656076135 1.6161849128461563 1.5594957897146855 0.9096935833255491 1.2599717279998224 0.5805255351788299 0.11116100662117562 0.247505378158875 1.1884069043230487 0.09002342387425454 0.03219060843792377 41.32234057942769 -1.6161849128461563 0.3502781446742733 HGGS(ph)PQPLATTPLSQEPVNPPSEASPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HGGS(0.596)PQPLAT(0.374)T(0.03)PLSQEPVNPPSEASPTR 180.91 9.2861e-18 569280000.0 93498.0 134000.0 107820.0 111640.0 112800.0 112080.0 120720.0 108440.0 137190.0 113910.0 True False 92994.61715660426 138460.1089952894 123000.11881175969 125773.61255329299 127164.41138201892 104332.17340794092 114880.31240481617 116532.34344716267 103381.36275181691 106640.16627674262 0.8720411867632811 1.2983860943724583 1.1534126690365547 1.1794206343123756 1.19246261349606 0.9783571898902313 1.0772705671396787 1.092762206922566 0.9694411248715726 1.0 16.70239140947413 2.744573759195816 24.94605074395666 1.0389613682266428 1.1510216112227585 0.21292206140263303 0.10791755980792 745.9747241428761 3094742.043019516 0.03174660255680187 0.03286719068549998 555.3589295076665 -2.744573759195816 0.11206024299611572 HGGSPQPLATTPLSQEPVNPPS(ph)EASPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HGGSPQPLATTPLSQEPVNPPS(0.51)EAS(0.398)PT(0.092)R 138.11 2.2108e-06 1392200000.0 124410.0 124130.0 134790.0 122270.0 133340.0 143710.0 141330.0 151800.0 166050.0 157850.0 True False 123740.19038325039 128261.59201183032 153767.26038431746 137749.3694633746 150320.05863190093 133775.66595695217 134493.3279669704 163128.08682478112 125129.2024560041 147775.87785781603 0.8373503996525616 0.8679467438876488 1.040543711283286 0.9321505746419011 1.017216482222713 0.9052605059512197 0.9101169278545882 1.1038884640004396 0.8467498503131774 1.0 17.173051265334234 4.369008298034826 6.538065100198385 0.9746816185128222 0.845206261283454 0.3019710936866481 0.07125712910415212 0.21806860938192082 11.507110562928517 0.016834507006537183 0.04709845994120338 23388.81927088705 -4.369008298034826 -0.1294753572293682 HGGSPQPLATTPLSQEPVNPPS(ph)EASPTRDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HGGSPQPLATTPLS(0.002)QEPVNPPS(0.333)EAS(0.333)PT(0.333)RDR;HGGSPQPLATTPLS(0.06)QEPVNPPS(0.313)EAS(0.313)PT(0.313)RDR 90.867 0.0006256 378830000.0 82656.0 90616.0 88076.0 89733.0 95369.0 99220.0 92246.0 88848.0 107510.0 93648.0 True False 82210.98927994489 93632.09878147123 100476.3352296841 101093.1885994681 107513.67685365034 92361.15493875707 87783.70856605926 95478.28892100247 81015.60106019264 87671.30446391339 0.9377183307884276 1.0679902546677789 1.146057262910254 1.1530932409141845 1.2263268752651482 1.0534935632989706 1.0012821082432066 1.089048343752003 0.9240834450403288 1.0 16.419817093576704 2.487071498767997 24.468572316707167 1.020079937776826 1.1120259553355905 0.26068931650809524 0.07934744670257272 573.2716292239279 1409732.6587621116 0.027781441937707325 0.02460244853890216 306.9527289204239 -2.487071498767997 0.09194601755876453 HGGSPQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 5 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HGGSPQPLATTPLSQEPVNPPS(0.008)EAS(0.982)PT(0.01)R;HGGSPQPLATTPLSQEPVNPPS(0.008)EAS(0.922)PT(0.07)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.783)PT(0.216)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.948)PT(0.052)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.941)PT(0.059)R 229.17 4.9582e-35 15178700000.0 1327190.0 1345330.0 1387270.0 1472780.0 1497160.0 1538490.0 1579110.0 1395120.0 1680410.0 1567530.0 True False 1320044.5565046703 1390108.4957808398 1582585.5576329988 1659233.7969924652 1687814.4516374434 1432137.8075159083 1502722.4165139918 1499230.9386758148 1266295.4718403732 1467488.8933700495 0.899526096905049 0.9472701988145834 1.0784310292111532 1.1306619113021554 1.150137802924983 0.9759104917155738 1.0240093968023358 1.0216301775428571 0.8628995269138693 1.0 20.484918153722134 -0.8744185749718354 7.16656663601158 1.0000031399670284 1.0178869685951795 0.0 0.08871567264087798 0.0 0.0 0.08880618863220625 0.02093181908581415 0.1335307920380837 0.8744185749718354 0.017883828628151077 HGGTIPIVPTAEFQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 HGGTIPIVPTAEFQDR 16 0 P00367;P00367-2;P00367-3 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial 0 ;; 166.04 6.8175e-09 2141970000.0 1708730.0 1989630.0 2083550.0 1777800.0 2378930.0 3449200.0 1908910.0 1531380.0 2292730.0 2102980.0 False True 1699530.3875377488 2055853.6317932648 2376895.7294587446 2002869.2977180595 2681872.634477187 3210764.9225434465 1816568.7305556468 1645659.3517900773 1727717.4125080055 1968766.015948242 0.8632465075943432 1.0442346196244543 1.2073022950438983 1.0173221609340874 1.362209938993427 1.6308514554468296 0.9226940712305568 0.8358836644167983 0.8775636101560107 1.0 20.90886022922288 2.0338008493486615 24.99998097517 0.8845069019067499 1.1900048870250959 0.3175646997552011 0.19947177611970368 215.18994647939473 159159.1763029972 0.07936470588053794 0.058614441593965436 108.09381612003907 -2.0338008493486615 0.305497985118346 HGISWSPEEVEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGISWSPEEVEEAR 14 0 Q9Y6X8 Q9Y6X8 ZHX2 Zinc fingers and homeoboxes protein 2 0 226.59 2.3463e-12 83551000.0 74659.0 89688.0 79989.0 88948.0 91353.0 104940.0 96247.0 82264.0 105920.0 86273.0 False True 74257.04423939475 92673.21086245899 91250.75592314823 100208.80767995598 102986.26305834747 97685.74480218875 91591.16491075484 88402.95740812784 79817.43525528422 80766.9832779686 0.9193985119368744 1.1474145387294432 1.1298027017933623 1.2407150002752507 1.275103499952558 1.209476209678308 1.134017406537689 1.0945432628562983 0.9882433640065965 1.0 16.301478033965004 1.4521812611708198 2.1831799407646097 0.9908354158822971 1.1610510277557378 0.3142603630533001 0.09069521718940567 0.35955617563713604 3.2203660336392654 0.07992962306334943 0.025703571636934198 28.325739784538374 -1.4521812611708198 0.1702156118734407 HGIVEDWDLMER ddPTM_BT-474_Trastuzumab_2h_R1 11 HGIVEDWDLMER 12 0 B4DXW1;P61158;F8WDR7 B4DXW1 ACTR3 Actin-related protein 3 0 ;;;;;;;;;; 265.72 1.1937e-21 7739640000.0 3753907.0 4233776.0 3910507.0 4179215.0 4022664.0 4220968.0 4264839.0 3526582.0 4747007.0 4005708.0 False True 3733696.3818102744 4374694.674788365 4461072.394863832 4708303.190495434 4534926.416202471 3929182.417249909 4058532.4443028783 3789753.456460546 3577170.731484904 3750060.2859808444 0.9956363623721612 1.1665664925821706 1.1896001809733625 1.2555273332796455 1.209294270056339 1.0477651337869665 1.0822579198193747 1.0105846752992451 0.9538968599672204 1.0 21.83848235788909 2.191423363039509 1.3889824487192002 0.9881104768618851 1.1661502133700714 0.521028116164564 0.06958042258479084 0.35059813691781316 1.3062795477956293 0.044952817412657324 0.02511360531179174 155.3901060342889 -2.191423363039509 0.17803973650818627 HGKPTDSTPATWK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGKPTDSTPATWK 13 1 O60832;O60832-2;H7C2Q2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 162.22 2.4522e-05 489810000.0 679180.0 614870.0 593500.0 556910.0 656860.0 778210.0 647270.0 683240.0 968070.0 759110.0 False True 675523.3703439921 635335.5762532352 677059.6412055228 627414.7488987318 740507.2274857532 724414.1744092939 615959.0772884804 734226.8382224218 729502.119973404 710662.9498932309 0.9505538039452907 0.8940040793581363 0.9527155472326837 0.8828583915806977 1.041994981723764 1.0193498542707609 0.866738694314965 1.033157614777485 1.0265092897878008 1.0 19.43880596141217 3.2435440203028296 24.999997318279625 0.9938910563673572 0.9205082229827564 0.3590860917706655 0.05082620781969033 149.43942492429625 749679.4812483111 0.014323612983619996 0.01880506277328864 1752.0400128482895 -3.2435440203028296 -0.07338283338460083 HGLAHDEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGLAHDEMK 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 74.376 0.028885 31155000.0 39690.0 35700.0 32767.0 29676.0 27670.0 38556.0 36346.0 22504.0 49159.0 31155.0 False True 39476.31344997355 36888.25291889427 37380.30878413035 33432.978557251154 31193.610487060865 35890.71447106148 34587.80512479663 24183.362752996552 37044.42314685157 29166.661226862565 1.3534738564322122 1.2647403359600207 1.2816108259145889 1.1462737643230587 1.06949541616822 1.230539011369805 1.1858678254520671 0.8291440204586604 1.2700947447743374 1.0 14.83203262669969 5.486810492197032 0.27030381348613336 1.0004664401576466 1.8197934954273336 0.38129968651606017 0.11780394345161106 12.880629095132592 0.5709814899777015 0.14904485425861164 3.7608938495682445 306768.3088719813 -5.486810492197032 0.819327055269687 HGLAHDEMKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 13 HGLAHDEMKSPR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR 177.74 1.3823e-05 12707078000.0 10135060.0 9036660.0 7075150.0 7791630.0 7584410.0 9080480.0 8796550.0 4060048.0 12851530.0 6708365.0 True False 10080493.963071031 9337439.765323682 8071269.621693763 8778049.559106173 8550239.657179944 8452767.790750716 8371027.270415718 4363029.398266008 9684442.63317922 6280231.402379767 1.6051150534439276 1.4867986809825904 1.2851866602614863 1.3977270894476768 1.3614529639688122 1.3459325380188554 1.3329170111858755 0.6947243053198209 1.5420518787746411 1.0 22.582386287185543 1.9732651491287172 23.535054969504888 1.0372094173117063 1.4023606437237508 0.3321357756882779 0.20985576427105013 343.9321364927662 302767.16028947436 0.0824542682016575 0.053434462191624246 94.02972135374175 -1.9732651491287172 0.36515122641204445 HGLEAISIMDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 HGLEAISIMDSR 12 0 P26640;A0A140T936 P26640 VARS Valine--tRNA ligase 0 ;;; 210.95 3.7529e-08 1571720000.0 1279030.0 1524270.0 1396170.0 1423990.0 1295140.0 1450520.0 1536110.0 1249140.0 1799870.0 1491750.0 False True 1272143.8445935913 1575004.4055093257 1592738.6002728136 1604266.9879950164 1460068.4021037966 1350248.9665568038 1461802.4907899448 1342357.169804396 1356316.1555223619 1396545.2378485722 0.9109220454278834 1.1277861703468168 1.140484788538955 1.148739721791216 1.045485933812702 0.9668494295515343 1.0467276327130681 0.9611984871126303 0.9711938566428505 1.0 20.41343087646351 2.9753630995653255 5.7567963613073445 0.9905956162106978 1.0905597704853391 0.2987175865702937 0.06678941318728458 0.21051862139078384 22.546349478313235 0.020226544746463262 0.022395072789469776 944.8505050863596 -2.9753630995653255 0.09996415427464134 HGLEVIYMIEPIDEYCVQQLK ddPTM_BT-474_Trastuzumab_2h_R1 5 HGLEVIYMIEPIDEYCVQQLK 21 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;; 280.65 5.5401999999999994e-45 5402207000.0 2381494.0 2209998.0 2035314.0 1763845.0 1762560.0 2388032.0 2410584.0 2165037.0 3269053.0 2238625.0 False True 2368672.300912856 2283556.447457999 2321868.5199335734 1987147.5961488963 1987011.5684883974 2222952.968662669 2293974.842594858 2326603.0547751244 2463438.6912159435 2095754.0359167121 1.1302243776315888 1.0896109029603465 1.1078917087319151 0.9481778692029048 0.9481129628932103 1.0606936360689474 1.094582094692921 1.1101508167953669 1.1754426564367326 1.0 20.999037977046108 -0.31474458735864996 8.067057403751667 0.9999999787544551 1.0712888427816634 0.0909538758764381 0.0696351765045555 0.0 0.0 0.07284148772848908 0.01716890330817711 0.4844571976232981 0.31474458735864996 0.07128886402720824 HGLLVPNNTTDQELQHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 HGLLVPNNTTDQELQHIR 18 0 P56537;B7ZBH1 P56537 EIF6 Eukaryotic translation initiation factor 6 0 ; 94.281 0.0011524 2547800000.0 1084870.0 1325240.0 1279990.0 1308920.0 1305870.0 1316490.0 1366760.0 1091120.0 1551090.0 1276480.0 False True 1079029.1804603885 1369349.8122755017 1460201.4661274739 1474629.1377934082 1472164.8040021015 1225484.1449841198 1300644.5972697684 1172544.9149950931 1168844.653041152 1195013.9535504908 0.9029427457767323 1.145886044432405 1.221911645290072 1.233984869726547 1.2319226897963587 1.0254977704177424 1.088392811988044 0.9811976768232369 0.9781012594609565 1.0 20.18859603322105 2.267866738544305 1.685839784964951 0.992887026872007 1.152044023852057 0.3086340257930368 0.09560170442330995 0.4470304514557753 2.5442215532622288 0.05177427958757238 0.03299492058448969 185.29629621944756 -2.267866738544305 0.15915699698005004 HGLQLGAQS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 6 HGLQLGAQSPGR 12 0 Q8N1G0;A6PVV7 Q8N1G0 ZNF687 Zinc finger protein 687 1 HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR 200.0 1.0634e-07 9724190000.0 5919260.0 5775110.0 5663100.0 5790830.0 5213550.0 6306790.0 6298360.0 5222200.0 7066250.0 6025120.0 True False 5887391.361851609 5967331.045222277 6460415.255452383 6523948.484252822 5877464.689368134 5870816.451886761 5993684.264728273 5611907.081794289 5324867.370398906 5640591.683235241 1.0437542180813932 1.0579264340225438 1.1453435416454256 1.1566071168815606 1.0419943543931602 1.040815712531681 1.0625985005336374 0.9949146112585657 0.9440263840095501 1.0 22.427415074802237 2.0086056468796865 1.0527977191232916 0.9708196896396336 1.093725653360379 0.566154452787458 0.040396815624849786 0.39844973424484265 0.8140519472809457 0.03401238448639569 0.016023380148204425 102.00128591441052 -2.0086056468796865 0.12290596372074536 HGLSSGSSSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGLSSGSSSTK 11 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 ; 123.01 0.00037892 80498000.0 71533.0 99589.0 109457.0 121603.0 113714.0 100408.0 111119.0 122102.0 106764.0 121719.0 False True 71147.87427606349 102903.7596621783 124867.59418270059 136997.92733176355 128194.80386431668 93467.03129500819 105743.7494541979 131213.8712613928 80453.44276430481 113950.78921112137 0.6243736859447709 0.9030543831646854 1.0958028026585511 1.2022551864730116 1.125001456785041 0.8202403155088108 0.9279773329018551 1.1514959410968835 0.7060367314810375 1.0 16.798051391027983 4.663770458990715 3.0495080965134203 1.0163596381429063 0.5929647465114632 0.3737726594675942 0.14663993640757325 0.3133519493840866 4.588541270758323 0.03620024271407169 0.28865253707054583 46107.381525135446 -4.663770458990715 -0.42339489163144306 HGLTSGS(ph)ASPPPPALPLYPDPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGLTSGSASPPPPALPLYPDPVR 23 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 HGLT(0.072)S(0.064)GS(0.432)AS(0.432)PPPPALPLYPDPVR 95.794 0.0024602 176710000.0 105630.0 132530.0 128660.0 123650.0 122630.0 148690.0 134140.0 103560.0 133250.0 123620.0 True False 105061.29981659616 136941.18093392326 146774.2096672325 139304.0773218799 138246.2036150444 138411.41027861103 127651.13573543762 111288.17306702465 100412.3229585217 115730.46576359333 0.907810221996415 1.1832768496210653 1.2682417607050274 1.203694086969642 1.1945532466571487 1.1959807589589146 1.1030037327957798 0.9616151834587523 0.8676394957541904 1.0 16.820409174839956 1.7901151905588826 2.697364776359029 0.9280923200619149 1.1679180501357804 0.5070264611919002 0.0949627820653087 0.19935592858774348 2.8015143093515116 0.05598609380850125 0.026628224453277855 61.67585667833947 -1.7901151905588826 0.23982573007386554 HGLTSGSAS(ph)PPPPALPLYPDPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGLTSGSASPPPPALPLYPDPVR 23 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 HGLT(0.002)S(0.01)GS(0.046)AS(0.942)PPPPALPLYPDPVR 99.423 0.0017184 228500000.0 101550.0 89980.0 108280.0 105440.0 103530.0 101620.0 109130.0 103720.0 127510.0 103920.0 True False 101003.26608326555 92974.9299059413 123524.88281336802 118788.69318899316 116713.93182961366 94595.24858774939 103850.96498291567 111460.1130794881 96086.86904646241 97287.73662961177 1.0381911388050822 0.9556695748808512 1.2696860580038447 1.2210037698917653 1.1996777381507 0.9723244867735688 1.0674620315023984 1.1456748500978349 0.9876565369413286 1.0 16.569970340581765 2.747790197110203 24.644083457943957 1.0547074367302227 1.1388357865633374 0.20403084060499022 0.0969369675273004 1176.558747510455 3141549.6538839974 0.032480193117614034 0.033983728726249385 559.4872540577106 -2.747790197110203 0.08412834983311468 HGLYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGLYEK 6 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4;A0A2R8Y8A0 E7ETK0 RPS24 40S ribosomal protein S24 0 ; 92.692 0.046466 3248400000.0 7322000.0 7083400.0 6796300.0 6282300.0 6286300.0 7079500.0 7656600.0 6790700.0 10002900.0 7037000.0 False True 7282579.165550668 7319166.686994286 7753159.9655014165 7077638.535861277 7086823.043180734 6590110.8283504415 7286221.006947616 7297456.516475909 7537819.326992861 6587892.635321189 1.1054489756716581 1.1110027276025036 1.1768801337065833 1.0743402978236622 1.0757344473382147 1.0003367075257663 1.1060017839213587 1.1077072624636248 1.1441928009844318 1.0 22.6513856125864 -2.2003192778998506 2.788780055493139 0.640918184020047 1.0992083488012399 0.31863101123832305 0.043929474962869364 0.0755389452117926 0.005425994793340502 0.03276025747509841 0.010428255938948602 0.006304936574828745 2.2003192778998506 0.4582901647811929 HGNEVCK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGNEVCK 7 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 0 ; 69.998 0.058219000000000014 694210000.0 732700.0 707430.0 634590.0 597030.0 618270.0 488670.0 721000.0 666000.0 1048380.0 817290.0 False True 728755.2246106225 730976.3798995345 723934.7560448392 672613.9367851344 697003.019726603 454889.3931054466 686122.4755125291 715700.3018794755 790020.7965722702 765129.8524828284 0.9524595364379378 0.9553625146470671 0.9461593397456495 0.8790846868704938 0.9109604303960229 0.5945257417800929 0.8967399105995901 0.9353971741620651 1.0325316598335188 1.0 19.54534508712487 -0.8709432163592863 4.989670339853646 1.0000002402670296 0.896648847168439 0.06800206577401635 0.10989571807575171 3.0164636435891904e-07 6.829686985924946e-08 0.10942215018938124 0.025790988183807 0.13460363356774285 0.8709432163592863 -0.10335139309859065 HGNQYIQVNEPWKR ddPTM_BT-474_Trastuzumab_2h_R1 2 HGNQYIQVNEPWKR 14 1 P56192 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ; 145.71 5.5216e-06 1084930000.0 628720.0 635720.0 605950.0 618410.0 631290.0 717650.0 695790.0 617720.0 986030.0 692630.0 False True 625335.0413773593 656879.5558991443 691262.4929881821 696700.6425929936 711681.0395510183 668040.544666388 662131.9795240798 663817.4031186029 743036.1186250749 648425.7604096236 0.964389571725717 1.01303741462119 1.0660626631358656 1.0744493589410664 1.0975520761257773 1.0302498534980677 1.0211376844525697 1.0237369389816593 1.145907772318737 1.0 19.306581881265398 4.525194256246532 2.8313124371558405 1.0555908603824369 0.9640863811039566 0.3437806880753984 0.04052035045590798 0.3470596784643974 4.879322535303975 0.010082455024565916 0.057411595758609574 33511.52998773306 -4.525194256246532 -0.09150447927848027 HGPLALVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGPLALVDK 9 0 Q06210-2;Q06210;A0A6I8PRN4 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 65.305 0.082861 0.0 481030.0 577320.0 554500.0 502720.0 469530.0 554140.0 591840.0 507190.0 829170.0 588290.0 False True 478440.18792745663 596535.7472026899 632568.7801995997 566364.3004549573 529321.8623776537 515833.60610524967 563210.4381516431 545039.0932586349 624832.1638087615 550744.8285395912 0.8687148079013931 1.0831436198584423 1.1485696232082303 1.0283606329210284 0.961101829646327 0.9366108937837592 1.0226340928976256 0.9896399657603937 1.1345220716200415 1.0 19.071024517607974 -2.0694524753633123 2.4867200010137283 0.9716506050065465 1.01904806243581 0.004882139088438153 0.08242359010412506 4700000.964308141 11976103.232726227 817236.6330982554 0.019151118536749143 0.008522117634010711 2.0694524753633123 0.04739745742926349 HGPSSSHMHNT(ph)GADSPSCSNGVASTK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGPSSSHMHNTGADSPSCSNGVASTK 26 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 HGPS(0.088)S(0.088)S(0.088)HMHNT(0.358)GADS(0.358)PS(0.022)CSNGVASTK 76.259 0.043643 89502000.0 53401.0 96887.0 105420.0 125140.0 126900.0 134970.0 137680.0 18224.0 109100.0 61964.0 True False 53113.49494940884 100111.82522557158 120262.21967293377 140982.7111691066 143059.96280477126 125639.84158520511 131019.89241132444 19583.967419596916 82213.76686510124 58009.40446995064 0.915601451777049 1.72578612279032 2.0731503929717228 2.4303423290983246 2.4661512062044615 2.1658529807918923 2.258597439647805 0.33759987020279747 1.417248937759543 1.0 15.82399918810514 1.7488837257131327 24.999999999666613 0.8899726165104992 2.0372212812695305 0.5119181521464424 0.4853488254562441 2.0761308473231885 5037.866061692827 0.23160531905229292 0.12843723201373367 56.089778595634044 -1.7488837257131327 1.1472486647590312 HGS(ph)ASQVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGSASQVQK 9 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 HGS(0.996)AS(0.004)QVQK;HGS(0.935)AS(0.065)QVQK 134.3 0.00016274 282318000.0 670130.0 461760.0 444270.0 420486.0 464680.0 495700.0 596260.0 517550.0 896020.0 634060.0 True False 666522.0945384429 477129.4024601852 506819.3543359351 473719.48448659934 523854.2436258563 461433.42575228715 567416.6258656037 556172.2090656494 675207.8770528687 593593.7479539233 1.1228590207290736 0.8037978905687895 0.8538151826613849 0.7980533590851954 0.8825130746938386 0.777355602788635 0.9559006101756456 0.9369576599867109 1.1374915577872302 1.0 19.1791163712416 1.5544863947941523 2.1652564451520693 1.0634197438090365 0.8700914464904546 0.32881400762851776 0.10049386120182716 0.29771962888019177 2.932980911111876 0.07486235627791575 0.026296173493105722 35.849771739096205 -1.5544863947941523 -0.19332829731858192 HGS(ph)DPAFAPGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HGSDPAFAPGPR 12 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 HGS(1)DPAFAPGPR;HGS(1)DPAFAPGPR;HGS(1)DPAFAPGPR 193.94 2.2698e-06 3657500000.0 2722470.0 2435330.0 2120350.0 2262550.0 2173110.0 2647860.0 2552840.0 2279550.0 3429870.0 2410590.0 True False 2707812.5240148497 2516388.4868619256 2418876.849587411 2548988.59801552 2449842.6774679045 2464819.6705919905 2429349.376404162 2449661.5963203534 2584624.496403341 2256744.0823900704 1.1998757613433342 1.1150526577195545 1.0718436655988168 1.129498297084683 1.0855651274704252 1.0922016766657705 1.076484212525901 1.0854848874693706 1.145289143138472 1.0 21.105811393702204 -4.999999997475185 0.014377046143606404 1.2269359130467645e-06 1.9551741562076448 0.4707083067542128 0.036338714851702626 5879.854398216682 6.414412174713074 540.8873958015078 350.54462627447026 1.0000000058136014e-05 4.999999997475185 1.9551729292717317 HGS(ph)GADSDY(ph)ENTQSGDPLLGLEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGSGADSDYENTQSGDPLLGLEGK 24 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 HGS(0.985)GADS(0.284)DY(0.729)ENT(0.001)QSGDPLLGLEGK 130.87 0.0010851 69847000.0 95274.0 77208.0 52430.0 56488.0 61398.0 71154.0 60616.0 39748.0 83979.0 47988.0 True False 94761.05536993642 79777.82160677835 59811.68827027048 63639.375008154886 69216.6713655426 66235.29145849947 57683.77250439312 42714.19759625432 63283.50071094714 44925.36475540619 2.109299632531824 1.775785729089225 1.3313567646231055 1.4165577809915657 1.5407036034629693 1.4743406496333211 1.2839911889074116 0.9507813198359 1.408636325058035 1.0 15.455242596777808 7.999999999999999 0.299388693118897 1.108810977206953 9.216844686915993 0.7319052356197453 0.16709629765310988 28.992906684137097 0.41446180603246285 0.18115403491201074 125.79376677277916 99999999.99999979 -7.999999999999999 8.108033709709039 up HGS(ph)GADSDYENTQSGDPLLGLEGK ddPTM_BT-474_Trastuzumab_2h_R1 5 HGSGADSDYENTQSGDPLLGLEGK 24 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 HGS(0.999)GADS(0.001)DYENTQSGDPLLGLEGK;HGS(0.999)GADS(0.001)DYENTQSGDPLLGLEGK;HGS(0.902)GADS(0.098)DYENTQSGDPLLGLEGK;HGS(0.999)GADS(0.001)DYENTQSGDPLLGLEGK;HGS(0.973)GADS(0.026)DYENTQSGDPLLGLEGK 273.96 3.6586e-52 2231650000.0 1656780.0 1408230.0 1215570.0 1273950.0 1271260.0 1645470.0 1426520.0 1113175.0 1872620.0 1239490.0 True False 1647860.0805655646 1455102.08425699 1386711.6900761516 1435231.9393789626 1433147.4256516444 1531722.5319197387 1357513.7777644 1196245.7710881142 1411137.8928224181 1160384.6870192213 1.4200980924684234 1.2539824943698925 1.195044803321488 1.2368587378257851 1.2350623389671678 1.3200127070397703 1.169882533741083 1.0309044788939885 1.2160948938815523 1.0 20.146171731617674 7.999999999980356 0.07260773403729673 0.76386008202416 2.268128344383576 0.602322324049664 0.07395303827768931 166.01992042033865 0.8865007752855254 3.0828393606713287 25.37225417187494 99999999.99547684 -7.999999999980356 1.5042682623594157 HGS(ph)GPPSSGGGLYR ddPTM_BT-474_Trastuzumab_2h_R1 6 HGSGPPSSGGGLYR 14 0 Q9HC52 Q9HC52 CBX8 Chromobox protein homolog 8 1 HGS(1)GPPSSGGGLYR;HGS(1)GPPSSGGGLYR;HGS(0.903)GPPS(0.078)S(0.019)GGGLYR;HGS(1)GPPSSGGGLYR;HGS(1)GPPSSGGGLYR;HGS(0.929)GPPS(0.059)S(0.012)GGGLYR 188.0 5.6906e-07 3203910000.0 835984.0 801763.0 726859.0 737117.0 731578.0 890083.0 821171.0 719997.0 1019971.0 851548.0 True False 831483.1550305543 828449.1967790324 829194.4292283137 830435.9366216917 824740.1218974706 828553.6572400094 781447.8215521473 773726.8322106851 768612.8139611735 797201.4775930783 1.0430025262132976 1.039196765264783 1.0401315759371508 1.0416889079645906 1.0345441460890632 1.0393277992178214 0.9802388022554918 0.9705536855585515 0.9641387222233706 1.0 19.604584858615578 2.2242387280089595 5.4923162802260315 0.9752329928851569 1.0397197541169592 0.9166614437985057 0.008982774464306 0.03951005418767986 3.5996642159346433 0.003128028945307071 0.00239277097320785 167.58638310774285 -2.2242387280089595 0.0644867612318023 HGS(ph)PTAPICLGSPEFTDQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGSPTAPICLGSPEFTDQGR 20 0 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9;H0YDE2;Q6IQ23-3 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 1 HGS(0.975)PT(0.025)APICLGSPEFTDQGR 161.53 1.4447e-11 316060000.0 165770.0 186630.0 183550.0 170910.0 167310.0 171850.0 202920.0 186080.0 216080.0 171350.0 True False 164877.51273877843 192841.86672978255 209392.24455479972 192547.18847620283 188615.93677593608 159970.41399138703 193103.9843703221 199966.23449509428 162829.9793236578 160414.29629988427 1.0278230590529815 1.2021488806039893 1.305321591557864 1.2003118981131717 1.1758050318865012 0.997232900565998 1.2037828848454166 1.2465611800663339 1.0150590257819514 1.0 17.29144319654042 2.980691033360541 24.540288657661925 1.1241511635043295 1.193150255435899 0.12411427091525817 0.10236993185262594 1604.5432307345918 2039260.5329139591 0.03232939809770832 0.0348079603994362 956.5133445657634 -2.980691033360541 0.0689990919315695 HGS(ph)VSADEAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGSVSADEAAR 11 0 A0A1B0GU90;A0A1B0GW73;H3BNF1;A0A1B0GTV3;A0A0S2Z5D0;H3BUV4;A0A1B0GUD2;H3BUT1;A0A1B0GTU6;Q9NWW5;Q9NWW5-2 A0A1B0GU90 CLN6 Ceroid-lipofuscinosis neuronal protein 6 1 HGS(0.995)VS(0.005)ADEAAR 87.49799999999998 0.005026 0.0 28892.0 36495.0 37863.0 40527.0 38109.0 42768.0 43961.0 30586.0 29784.0 42137.0 True False 28736.448682202954 37709.71401330661 43193.78128890428 45657.71404467309 42961.95526026032 39811.548825042984 41834.43848267167 32868.48263256098 22444.132285152817 39447.78058469935 0.7284680723799449 0.9559400669535543 1.0949610003067676 1.1574216183503716 1.0890842177550546 1.0092215134781177 1.0605017028232517 0.8332150033634519 0.5689580491597604 1.0 15.267656513006937 1.6136893680648308 4.591372018706225 0.7607633172819127 1.0222145254507153 0.304161783969089 0.14676223231069777 0.16849431150675095 7.908589659510688 0.08295977164399079 0.037977755380023105 41.085574875445104 -1.6136893680648308 0.26145120816880263 HGS(ph)YDSLASDHSGQEDEEWLSQVEIVTHTGPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HGSYDSLASDHSGQEDEEWLSQVEIVTHTGPHR 33 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 K7ESE9;Q9H6U6-7 BCAS3 Breast carcinoma-amplified sequence 3 1 HGS(1)YDSLASDHSGQEDEEWLSQVEIVTHTGPHR;HGS(0.483)Y(0.407)DS(0.11)LASDHSGQEDEEWLSQVEIVTHTGPHR 289.18 8.576999999999995e-90 453740000.0 49527.0 56128.0 43608.0 59836.0 57236.0 56518.0 51727.0 13549.2 58240.0 38490.0 True False 49260.352134967 57996.18654990747 49747.62735246912 67411.23146487669 64524.665335649326 52611.043689061386 49224.76739367069 14560.31010544352 43887.53237601731 36033.53524705312 1.367069642132757 1.609505871468731 1.3805924678605483 1.8707915002702846 1.7906837309538273 1.4600577858472545 1.3660820970292213 0.40407664709041513 1.2179635463219365 1.0 15.137052580944724 1.9413826721688305 6.20893589021095 0.8197265388328524 1.5816391882824634 0.6241937980593191 0.2437489437130376 0.13090347893671406 10.594933250868017 0.10453871089884503 0.06459988230726885 87.3740913203583 -1.9413826721688305 0.761912649449611 HGSGPNIILTGDSS(ph)PGFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGSGPNIILTGDSSPGFSK 19 0 Q53ET0;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 HGSGPNIILTGDS(0.011)S(0.989)PGFSK 194.33 2.1486000000000002e-15 410400000.0 194630.0 333390.0 373730.0 387140.0 378550.0 406640.0 360320.0 324210.0 302440.0 349490.0 True False 193582.1337054261 344486.6846114888 426347.9354806061 436151.88430564106 426756.09865836264 378529.9339275973 342889.94504393125 348404.19650502224 227907.71448837043 327185.2489865573 0.5916591114820693 1.052879632191616 1.3030781088120602 1.3330426284699672 1.304325607527301 1.1569284834816913 1.0479994012750227 1.0648530078424676 0.6965708729055026 1.0 18.319748180865428 1.42778452678496 4.189967631223253 0.848597755489328 1.1309285684884225 0.18596665508247123 0.21307620351188503 0.3350647779249227 10.387743571022328 0.1568274732162067 0.05657335721787868 26.77839397442183 -1.42778452678496 0.28233081299909446 HGSGTQYVSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGSGTQYVSTR 11 0 Q96B23-2;Q96B23 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 0 126.76 0.00030066 219960000.0 15848.0 30433.0 29622.0 38926.0 35865.0 29808.0 39037.0 28916.0 26750.0 30511.0 False True 15762.676128878324 31445.944007863014 33792.52012096037 43854.02760882732 40432.19516149034 27747.443120484506 37148.63117417834 31073.85875247282 20157.8209316357 28563.761858218684 0.5518417429440552 1.1009034511613196 1.1830556594294392 1.5353029417660247 1.4155066605786288 0.9714211754815026 1.3005510744198256 1.0878769717628038 0.7057131001053933 1.0 14.801898374910785 1.4039164716467094 6.18429572718771 0.8577994735085698 1.1697128145648934 0.16621693542800187 0.26093220975265013 0.3540331460716997 20.815492556083203 0.17960028330593228 0.06633332621792812 25.346410932012997 -1.4039164716467094 0.3119133410563236 HGTDLWIDNMSSAVPNHS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGTDLWIDNMSSAVPNHSPEK 21 0 Q8N6H7;E9PIY6;H0YF45;E9PJT7;E9PK28;E9PN48 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 HGTDLWIDNMSSAVPNHS(1)PEK 214.55 1.1523e-24 255510000.0 380910.0 286010.0 259500.0 246290.0 262560.0 345340.0 327540.0 200300.0 410500.0 231010.0 True False 378859.2228830792 295529.6699533043 296035.3443855655 277470.28874731757 295995.45968495455 321467.45864291827 311695.6388756916 215247.40310279082 309337.77541818505 216266.74402238862 1.7518145223652994 1.366505383382986 1.3688435812161623 1.2830002597098005 1.368659157574001 1.4864396285063548 1.4412555212068292 0.9952866497148897 1.4303529505496297 1.0 17.722452309303655 7.999999884240481 0.06344924128447124 0.5561296222280663 3.0401525595685475 0.4528234382724128 0.15667881181620386 285.07122166259836 1.3451447871587594 10.12413149112082 64.54107284088842 99999973.3453892 -7.999999884240481 2.484022937340481 HGTDLWIDNMSSAVPNHS(ph)PEKK ddPTM_BT-474_Trastuzumab_2h_R1 9 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;E9PIY6;H0YF45;E9PJT7;E9PK28;E9PN48 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK 270.88 1.1159e-45 11471400000.0 11738470.0 8321780.0 7398370.0 7726580.0 7859160.0 11351470.0 10857130.0 7497390.0 16888220.0 8463040.0 True False 11675271.381786626 8598765.416677764 8439996.188215163 8704764.235775907 8859977.44110912 10566769.59738614 10331929.1436357 8056883.312775017 12726344.471553972 7922921.541626928 1.4736068406641287 1.085302356144758 1.0652631284901068 1.098681110249696 1.1182715106490595 1.3336961046336844 1.3040554660742096 1.0169081279480372 1.6062691526970097 1.0 22.917601085034345 2.7701571741475375 24.78158482120234 1.237841160667843 1.1540345230414435 0.040035190576723 0.19333014670577992 2294.48454220016 1799590.262886625 0.057299664729274585 0.06077048230122236 589.056800474538 -2.7701571741475375 -0.0838066376263995 HGVESTLER ddPTM_BT-474_Trastuzumab_2h_R1 2 HGVESTLER 9 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 148.94 8.8805e-05 926340000.0 498630.0 570730.0 484890.0 536470.0 494920.0 433320.0 453560.0 417810.0 577030.0 469920.0 False True 495945.43148300087 589726.4030364298 553158.2972605655 604387.046994492 557945.1283793345 403365.608325562 431619.5700325411 448989.10379619134 434828.68830585945 439929.30328124686 1.127329840917514 1.3405026640369477 1.2573799770435643 1.3738276638692268 1.2682608869603762 0.9168873392088871 0.9811112076719443 1.0205937646057475 0.9884058303519586 1.0 18.746912175458736 2.7488255784407665 24.21949429622854 0.9857858708531013 1.2818674429289674 0.8327104716008256 0.06538407719352933 168.9043467183023 398518.2575230606 0.019464274504047828 0.020423094477079247 560.8226929159908 -2.7488255784407665 0.29608157207586605 HGVIVAADSR ddPTM_BT-474_Trastuzumab_2h_R1 8 HGVIVAADSR 10 0 P28074;H0YJM8;P28074-2 P28074 PSMB5 Proteasome subunit beta type-5 0 ;;;;;;; 120.68 0.00053504 3489270000.0 2755383.0 3258003.0 3106052.0 2905156.0 2454385.0 2687808.0 3089420.0 2431230.0 3827234.0 2904834.0 False True 2740548.3240798316 3366443.6603506003 3543357.1233120416 3272948.4517276417 2766936.381470358 2502006.159379468 2939972.951869509 2612660.7281357916 2884063.463008145 2719445.0071664914 1.007760155788305 1.2379156965774591 1.3029706848177895 1.203535443115237 1.0174636273867328 0.9200429325785181 1.0810929965937408 0.9607330618014729 1.0605338425332516 1.0 21.374880821128368 3.223405630290865 6.447965209764089 1.0021441518777683 1.20033362112238 0.5381128667650042 0.08201455133057754 0.11070364866898627 17.89451660101583 0.02331898890762828 0.02910029847455373 1672.652139155696 -3.223405630290865 0.19818946924461178 HGWEELVYYTVPLIQEMESR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGWEELVYYTVPLIQEMESR 20 0 O75323;O75323-2 O75323 GBAS Protein NipSnap homolog 2 0 153.14 5.6317e-08 107300000.0 105340.0 141550.0 148600.0 120260.0 128900.0 218700.0 132780.0 87552.0 162980.0 144800.0 False True 104772.86114437426 146261.40618121796 169521.5883456457 135484.9036694644 145314.65094984276 203581.78376442427 126356.92413114206 94085.57482004771 122815.76282011157 135558.74003048308 0.7728963925218986 1.0789522398063611 1.2505397166388932 0.9994553183291459 1.0719681439733497 1.5017975507786872 0.9321193462164682 0.6940576077860469 0.9059966387449013 1.0 17.048558607104454 2.0101655419348083 24.95702912445265 0.8277904159005229 1.1192358564620724 0.26001393120948035 0.18852224796639505 228.87007942627918 561887.6835180003 0.07044975547679631 0.051974601526127324 102.36831197128343 -2.0101655419348083 0.2914454405615494 HGYEKPTPIQTQAIPAIMSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HGYEKPTPIQTQAIPAIMSGR 21 1 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 98.816 0.00055781 178780000.0 516460.0 526560.0 501970.0 446150.0 438410.0 548860.0 547040.0 523280.0 660610.0 505620.0 False True 513679.4367441002 544086.2312877582 572643.0127985446 502632.5442552101 494238.91484034585 510918.6000774665 520577.5853042634 562329.810762 497811.51722048054 473350.8987169388 1.0851979749832008 1.1494352979207476 1.209764287657943 1.0618603357839647 1.0441279739407403 1.0793654379073927 1.0997709874753314 1.1879766411899646 1.0516754453616641 1.0 18.852550535702594 1.0040548200136892 24.63524411070541 0.9999999928656275 1.1167154126445253 0.35101743746832337 0.050754650502740126 82.91445112683239 503745.11351849505 0.052324394289508996 0.013081098584637676 10.093802898347347 -1.0040548200136892 0.11671541977889788 HGYIGEFEIIDDHR ddPTM_BT-474_Trastuzumab_2h_R1 8 HGYIGEFEIIDDHR 14 0 P62244;I3L3P7;I3L246;H3BN98 P62244 RPS15A 40S ribosomal protein S15a 0 ;;;;;;; 222.74 2.1863e-12 30313950000.0 7371870.0 9034720.0 7905340.0 8764160.0 8286640.0 8240010.0 8531690.0 4896470.0 9592120.0 7136450.0 False True 7332180.671011759 9335435.19359644 9018343.157552928 9873701.757390425 9341894.48523665 7670397.503597128 8118979.56047917 5261869.455170866 7228270.553822865 6680995.6511777695 1.0974682597973544 1.3973119698035918 1.349850176292678 1.4778787882686055 1.3982787855264955 1.1480919767168147 1.215234971609045 0.7875876186572984 1.0819151712138322 1.0 22.67163168908612 2.175297851912582 1.809515703610402 0.9446551400915363 1.347100692243034 0.5885583057860584 0.13069751176900413 0.21813416207081818 1.4045948091373803 0.06868830718167783 0.04081941355613011 149.72621704241598 -2.175297851912582 0.4024455521514977 HGYIPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 HGYIPGK 7 0 Q9ULV4;Q9ULV4-2;Q9ULV4-3;B4E3S0;H0YHL7 Q9ULV4 CORO1C Coronin-1C;Coronin 0 ; 76.592 0.040341 916600000.0 2000120.0 2156100.0 1862290.0 1885100.0 1792140.0 2257400.0 2286900.0 1907640.0 2701300.0 2292900.0 False True 1989351.5761542239 2227864.4851100272 2124484.244685144 2123753.466716344 2020358.4061540037 2101351.2513480196 2176273.9101936216 2049997.7835996416 2035600.8105655138 2146565.158949546 0.926760395723437 1.037874147831723 0.9897133733991995 0.9893729327814278 0.9412052542316938 0.978936624675464 1.0138401348406372 0.9550130705572613 0.9483060889526715 1.0 21.03359853575846 3.419693940265982 24.99974761897757 0.9720712905039814 0.9900012695285719 0.030758736680278398 0.03266736195091707 238.90911694141013 104002.56192923029 0.00875700810980408 0.01185704846850188 2628.4150198633643 -3.419693940265982 0.01792997902459048 HGYNMEQALGMLFWHK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGYNMEQALGMLFWHK 16 0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 0 174.83 2.1595e-09 85691000.0 192080.0 193590.0 191340.0 180460.0 172940.0 210630.0 218690.0 148770.0 257080.0 187610.0 False True 191045.8626220944 200033.5261223735 218279.00884290613 203306.2174970193 194962.88390431178 196069.6438696876 208111.12922307197 159871.97283875314 193726.0786955107 175636.5691789979 1.0877339697258166 1.1389059069954375 1.242787933419775 1.1575392211733664 1.1100358246329538 1.116337245632859 1.1848963470185871 0.9102430865398057 1.102993981270934 1.0 17.42223373320778 1.7516773161777095 24.99999999575244 0.999749186970155 1.149243097616058 0.551763143523391 0.05939002826457464 2.7471533251359994 5243.898025778748 0.026749861188502446 0.014834150328111669 56.45173786093981 -1.7516773161777095 0.1494939106459029 HGYPLIIYDVFPDACK ddPTM_BT-474_Trastuzumab_2h_R1 1 HGYPLIIYDVFPDACK 16 0 P31937 P31937 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial 0 66.387 0.054712 141860000.0 240950.0 234390.0 234630.0 222130.0 223810.0 323860.0 260770.0 212370.0 379430.0 281410.0 False True 239652.7519720614 242191.5294582527 267663.86455948075 250251.635224498 252310.87687419925 301472.32048443705 248155.55886186115 228218.12779300893 285924.5606015154 263450.17287277756 0.9096701260765232 0.9193067775104826 1.0159942642692363 0.9499011995158065 0.9577176364049775 1.1443238666236166 0.9419449460057773 0.8662667604443649 1.085307925531675 1.0 18.007170600827333 4.314613515345112 7.683318574982873 0.983768087050529 0.9131108561585115 0.14623401027186533 0.07403172636391539 0.5291165994104741 45.65805063170775 0.018894689772510916 0.05211922465074772 20635.42963090096 -4.314613515345112 -0.07065723089201748 HHAISAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HHAISAK 7 0 P27824;P27824-2;P27824-3;H0Y9Q7;D6RDP7;D6RAU8;D6RB85;D6RGY2;D6RFL1;H0Y9H1 P27824 CANX Calnexin 0 ; 68.422 0.062495 27891000.0 44098.0 62501.0 66266.0 39733.0 47323.0 42097.0 48135.0 21324.0 55721.0 32499.0 False True 43860.581267748385 64581.30800234764 75595.67680560263 44763.193726083715 53349.30354460359 39186.93347567887 45806.526156443215 22915.305161077962 41989.306173146644 30424.885996206267 1.4416021566430006 2.122647493581419 2.4846659019537096 1.4712690700522368 1.7534758733773335 1.2879894925675368 1.5055611436688674 0.753176368974244 1.3800974037629052 1.0 14.892964236637475 2.7210063051938147 0.9852785799442009 1.0488148627218696 1.984138676840839 0.5260158920098112 0.3293731263371977 0.3919090942720034 0.8031584607623101 0.18412342399182596 0.1673752798239814 526.0249032938415 -2.7210063051938147 0.9353238141189695 HHCAAITPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HHCAAITPGR 10 0 Q92896;Q92896-3;Q92896-2 Q92896 GLG1 Golgi apparatus protein 1 0 84.17 0.015104 13998000.0 4336.1 4808.8 5144.4 5749.5 4612.7 3594.4 4561.0 1920.5 4632.0 3292.5 False True 4312.754919386 4968.8580010190135 5868.6868040736135 6477.386110490483 5200.100003385096 3345.9275883074847 4340.367005287994 2063.8174621014 3490.5056656200577 3082.36983114893 1.399168547460917 1.6120252510928934 1.9039528432855524 2.101430543808588 1.687046100320414 1.0855049107005812 1.4081266178465532 0.6695554314234018 1.132409755100347 1.0 11.589824255390399 2.7263899702586842 3.208725931678326 1.022131528812529 1.7727100493801689 0.6676438943917763 0.24030240885499204 0.15447766950878833 3.299121499716015 0.0852898925555885 0.08450213270873978 532.586274982333 -2.7263899702586842 0.7505785205676399 HHDAEHHRGERPGKPD ddPTM_BT-474_Trastuzumab_2h_R1 1 HHDAEHHRGERPGKPD 16 3 Q5T3G2 Q5T3G2 TLE1 0 55.885 0.078635 15714000.0 2023.6 3955.6 2463.7 4127.5 2321.7 2386.2 2181.8 0.0 2053.6 0.0 False True 2012.7051624430956 4087.2597547893056 2810.5675451357115 4650.041076797889 2617.3547332059716 2221.2476105106043 2076.257998714612 0.0 1547.5177968301714 0.0 0.0 HHEDNLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HHEDNLLR 8 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 124.23 0.0013137 604870000.0 370870.0 413620.0 366420.0 436920.0 401430.0 320920.0 371860.0 271180.0 366850.0 349790.0 False True 368873.277127531 427387.09166143 418008.75102026534 492234.02720158314 452549.7310379781 298735.55576442153 353871.71115684975 291416.8286241382 276444.733038152 327466.1027297145 1.1264472079786327 1.3051338385829474 1.2764947197154124 1.503160244979205 1.3819742784538092 0.9122640580939557 1.0806361580848265 0.8899144864000449 0.8441934317284903 1.0 18.320986049927377 2.7364997764776104 24.99989914792484 0.9459313691297233 1.3258011001423105 0.755047118256416 0.106255693828396 92.78925605172215 1125612.8367545835 0.035093837320826125 0.03461315302268528 545.1296151218977 -2.7364997764776104 0.37986973101258714 HHGDVMDLQFFDQER ddPTM_BT-474_Trastuzumab_2h_R1 4 HHGDVMDLQFFDQER 15 0 Q8NFH3;B4E301;F5H0E3;B4DVD1;Q8NFH3-2 Q8NFH3 NUP43 Nucleoporin Nup43 0 ;;; 142.1 2.6874e-06 410791000.0 337916.0 404620.0 353585.0 412797.0 379080.0 327183.0 348520.0 122370.0 316879.0 215747.0 False True 336096.6978019973 418087.5321020444 403366.69458408543 465057.05787497025 427353.5910168068 304565.60931593826 331660.7561243088 131501.87078226928 238788.41641105735 201977.84174970037 1.6640275729775487 2.0699673215646914 1.9970838934102226 2.3025152355637553 2.115843932753781 1.5079159509653988 1.642065056499203 0.6510707790671021 1.1822505594795603 1.0 17.623837503298624 2.1586331721836043 1.6079551765602407 0.9221035522083344 2.0305643172060606 0.7688841526364276 0.24445948424354408 0.1638854804644128 0.8208879655788913 0.13910762466233687 0.0783235088976261 144.08977798162672 -2.1586331721836043 1.108460764997726 HHGKDS(ph)DKEER ddPTM_BT-474_Trastuzumab_2h_R1 5 HHGKDSDKEER 11 2 Q92766;Q92766-2;Q92766-5;Q92766-3;A0A087X055;Q92766-4 Q92766 RREB1 Ras-responsive element-binding protein 1 1 HHGKDS(1)DKEER;HHGKDS(1)DKEER;HHGKDS(1)DKEER;HHGKDS(1)DKEER;HHGKDS(1)DKEER 182.35 2.7653e-06 440723000.0 476551.0 532879.0 246241.0 368311.0 327971.0 277112.0 370661.0 62522.4 396923.0 108136.6 True False 473985.30236579356 550615.5553828416 280909.5924348594 414939.1348362221 369736.1628135829 257955.89969148196 352730.7113674747 67188.13897031426 299106.6451457065 101235.22960759889 4.68201933460341 5.438971764247488 2.7748205197311457 4.098762223828414 3.6522479797470613 2.548084305151014 3.484268398804502 0.6636833761403452 2.954570719156595 1.0 16.627351906124783 3.386343015925612 0.2780343277483906 0.8238080082619281 6.374144266110061 0.626031627976176 0.8689753938939984 2.417623564373921 0.28411915463619647 1.1966980105537048 4.445330863186502 2434.1257794387643 -3.386343015925612 5.550336257848134 HHGPQTLYLPVTLSSIPVFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 HHGPQTLYLPVTLSSIPVFQR 21 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 123.43 1.5280999999999998e-05 973550000.0 520270.0 697490.0 665590.0 664080.0 599780.0 581900.0 617810.0 215862.0 548930.0 401510.0 False True 517468.92412743066 720705.5330083916 759299.2865880093 748152.4599103434 676158.4278254192 541674.6226452606 587924.1700366087 231970.71856502566 413653.5567851511 375885.2880499943 1.3766671390943215 1.9173549907931877 2.0200292768229313 1.9903744139377861 1.7988424908385543 1.4410636432602695 1.5641052968223974 0.6171316780404893 1.1004781776139465 1.0 18.519932924607115 2.0980456195067685 1.6627593907643234 0.8757141805799293 1.8298255102101764 0.7050182168796257 0.24187129376229852 0.18694196202946553 0.9857901236515304 0.14278969514877654 0.07664411102433857 125.3272815308324 -2.0980456195067685 0.954111329630247 HHGT(ph)PTSTKK ddPTM_BT-474_Trastuzumab_2h_R1 2 HHGTPTSTKK 10 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 HHGT(1)PTSTKK;HHGT(1)PTSTKK 208.72 8.278600000000001e-08 110335000.0 401370.0 298410.0 230113.0 264850.0 239740.0 196969.0 280640.0 22343.0 285400.0 99112.0 True False 399209.06851639954 308342.39645734546 262510.91022194823 298379.9828443179 270269.4679496918 183352.99664515263 267064.37105108984 24010.34811545512 215066.99416406816 92786.58730594783 4.302443705576499 3.323135438106365 2.829190272472934 3.21576632472171 2.9128075058793215 1.9760722100984016 2.878264831214138 0.2587696003548996 2.3178672738002715 1.0 16.50162865229756 2.848307944925956 0.42929539816092926 0.9009320858914477 4.117880839948985 0.64263474177963 0.6667900343804302 0.8207868012371093 0.3012326754029434 0.6399635289643115 1.0792958752944108 705.1929224503638 -2.848307944925956 3.2169487540575368 HHHHDS(ph)DSNS(ph)PCCK ddPTM_BT-474_Trastuzumab_2h_R1 1 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 HHHHDS(0.962)DS(0.039)NS(0.998)PCCK 127.97 3.6176e-05 125100000.0 87068.0 79825.0 34930.0 80414.0 77567.0 87438.0 66022.0 5831.6 69918.0 17135.0 True False 86599.2355621643 82481.92686976843 39847.8403829973 90594.40415496692 87444.6976743712 81393.61686691242 62828.26363146759 6266.783604264786 52687.64575320023 16041.429629988432 5.39847367470743 5.141806483106326 2.484057923896278 5.647526825514756 5.451178585161693 5.073962779149823 3.91662495679401 0.3906624128157152 3.284473202731509 1.0 13.969515101653059 1.9182309245793387 5.16896455112423 1.5809082457634864 4.811231787989105 0.6502785960520214 1.0838178652428427 0.135643565964244 6.1040880267665525 0.4836532651151961 0.2891921047157139 82.83825170751852 -1.9182309245793387 3.230323542225619 HHHHDS(ph)DSNSPCCK ddPTM_BT-474_Trastuzumab_2h_R1 4 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 HHHHDS(0.912)DS(0.088)NSPCCK;HHHHDS(0.926)DS(0.074)NSPCCK;HHHHDS(0.459)DS(0.459)NS(0.082)PCCK;HHHHDS(0.921)DS(0.079)NS(0.001)PCCK 139.89 1.6879000000000002e-05 367272400.0 354325.60000000003 418762.0 320112.9 427620.0 388786.3 370786.19999999995 319792.6 21733.2 295602.10000000003 80091.7 True False 352417.9503388754 432700.24002302514 365182.0138487937 481756.64815513394 438295.93078805925 345154.6227308299 304323.0102116333 23355.04174295346 222754.92332020472 74980.17913604586 4.700148151145914 5.770861646488244 4.8703806533483815 6.425119994459108 5.84549057948774 4.6032781824190225 4.05871276540247 0.3114828747018263 2.9708507753233393 1.0 16.194221651939607 1.9916850750820332 2.787646961605578 1.4051268607347465 5.445950245647307 0.8134644747585281 0.8382765222165252 0.10202371861132428 1.5052510982977005 0.40481444941491196 0.23037815544793674 98.10362949749272 -1.9916850750820332 4.04082338491256 HHHHDSDSNS(ph)PCCK ddPTM_BT-474_Trastuzumab_2h_R1 1 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 HHHHDS(0.039)DS(0.035)NS(0.926)PCCK 76.85 0.043976 6664300.0 5724.7 6069.7 6418.2 7520.8 7857.8 6570.1 6909.0 0.0 4080.5 3044.6 True False 5693.878851273961 6271.7262952888705 7321.826772005534 8472.932508875 8858.444253170472 6115.924451351826 6574.785275056944 0.0 3074.9154508986726 2850.2910213867995 1.9976482431269855 2.200381030649068 2.5687997180172584 2.972655228992204 3.107908696586507 2.145719298647667 2.3067066575742166 0.0 1.0788075420462093 1.0 11.476893514001468 1.8118894978402345 6.870301408654695 0.6344028311226169 2.50424365358435 0.7846491232589924 0.42689654745686423 0.10272528569862825 7.804748533200435 0.19661249706571812 0.117426823984199 64.84694155915645 -1.8118894978402345 1.869840822461733 HHHHDSDSNSPCCK ddPTM_BT-474_Trastuzumab_2h_R1 2 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 0 ; 62.14 0.045918 26378500.0 18038.3 15187.7 14136.3 12334.1 13331.8 23970.4 21498.1 8661.9 41827.1 26533.2 False True 17941.183797043526 15693.213413341482 16126.568165077715 13895.595795356241 15029.52570623051 22313.38266825221 20458.154772282778 9308.29496223697 31519.37165942502 24839.82845978461 0.7222748669979783 0.6317762394675394 0.6492222034136201 0.5594078806885904 0.6050575482259524 0.8982905298390974 0.8236029006965282 0.3747326587744755 1.2689045623022122 1.0 14.600367590101701 1.227732306113742 24.999989408974844 1.1344524637148794 0.65419849701713 0.6236217540460656 0.1480193177037068 153.48589709626938 354350.72789925715 0.13901412477126476 0.03614205463976954 16.89399285281573 -1.227732306113742 -0.48025396669774945 HHISIAEIYETELVDIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 HHISIAEIYETELVDIEK 18 0 P54920;M0R0Y2;M0R2M1;M0R058;M0R0I4;M0R027 P54920 NAPA Alpha-soluble NSF attachment protein 0 ;;; 157.03 4.2043000000000005e-09 275868000.0 152314.0 213298.0 219822.0 236797.0 215076.0 225449.0 234926.0 39854.6 200606.0 119702.0 False True 151493.95834767626 220397.49498863597 250771.02687292374 266775.4759206566 242464.65374467336 209864.24127986148 223561.73187552858 42828.752629558134 151169.33928268094 112062.51587796198 1.3518700446869836 1.9667369883847035 2.2377779483910367 2.3805950975719634 2.1636552762095898 1.872742545851882 1.9949733425491818 0.3821862492914168 1.34897327708854 1.0 16.773944261943672 1.7555894422678033 24.999999999240586 0.8763954276004114 2.0202529747991322 0.6813804402887317 0.33949618154571864 3.3978441490066182 4993.887555696165 0.1556267229983028 0.08630380281381739 56.96255255326069 -1.7555894422678033 1.1438575471987207 HHNHGS(ph)PHLK ddPTM_BT-474_Trastuzumab_2h_R1 4 HHNHGSPHLK 10 0 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 1 HHNHGS(1)PHLK;HHNHGS(1)PHLK;HHNHGS(1)PHLK;HHNHGS(1)PHLK 138.21 0.00011804 363700000.0 775950.0 804580.0 417050.0 730950.0 597540.0 514580.0 505530.0 83981.0 462170.0 134400.0 True False 771772.3714161495 831359.9589211188 475767.01493641577 823488.1950540076 673633.1771029409 479008.295791026 481075.5825878619 90248.0886668772 348274.39626071305 125822.47693437082 6.133819570399231 6.607404171154231 3.781256151749234 6.54484170966957 5.353838149715562 3.8070168976317116 3.823447084409184 0.7172652364326823 2.7679823569390822 1.0 16.941030142800006 2.2212973209220443 1.2191353263154547 1.3715570489181481 5.738852804857881 0.7653038709630341 0.9814537383442975 0.209711751087438 0.5997091590184368 0.6217607252136094 0.3485872519278362 166.45518237520122 -2.2212973209220443 4.367295755939733 HHPLHDFILELYQTGSTEPVEVPPELCHGIQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HHPLHDFILELYQTGSTEPVEVPPELCHGIQGK 33 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 129.03 2.3827e-08 569440000.0 237510.0 263020.0 286340.0 278790.0 260660.0 305790.0 259500.0 31105.0 304890.0 117270.0 False True 236231.2725498417 271774.46170105226 326654.18308810296 314084.7854150177 293853.5059471375 284651.45705223305 246946.9936137326 33426.213047989586 229753.94481668842 109785.72820010174 2.151748468792529 2.475499012091085 2.975379299691162 2.860889029606369 2.6766093440810748 2.592791082401995 2.2493542436010707 0.30446774454203246 2.0927487441530266 1.0 16.74433099514433 1.924343910338389 6.304755065905803 1.091119719390952 2.6282013380860265 0.6829703927973794 0.45416265292894487 0.12360861255747564 8.282912616534363 0.19076665540411472 0.11716265597400434 84.01250037326425 -1.924343910338389 1.5370816186950744 HHPLVLQECVS(ph)DDETSEQLTPEEEAEETEAWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HHPLVLQECVSDDETSEQLTPEEEAEETEAWAK 33 0 O75164-2;O75164 O75164-2 KDM4A Lysine-specific demethylase 4A 1 HHPLVLQECVS(0.333)DDET(0.333)S(0.333)EQLT(0.001)PEEEAEETEAWAK 85.0 0.00070855 44363000.0 15777.0 14590.0 11078.0 11378.0 11065.0 14575.0 10649.0 5751.4 13419.0 11261.0 True False 15692.05838498949 15075.61933015875 12637.686108297852 12818.453633387373 12474.062162606744 13567.464555859544 10133.867186869511 6180.598673017438 10112.067255387648 10542.313338972854 1.4884833983238805 1.4300105532271705 1.1987583466693992 1.215905202324055 1.1832376596598202 1.286953263445823 0.9612564966558718 0.5862658862708039 0.9591886458169793 1.0 13.36390385719474 2.133591015284297 3.739773935426477 0.7965015108087268 1.2940678957146259 0.6835267924539327 0.14100845991674119 0.12169280790552202 3.245256546858165 0.05872366709924335 0.04151153527872809 136.0163183410124 -2.133591015284297 0.4975663849058991 HHS(ph)DS(ph)DEEKSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HHSDSDEEKSHR 12 1 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 HHS(1)DS(0.999)DEEKS(0.001)HR;HHS(1)DS(0.997)DEEKS(0.003)HR 134.25 0.0001975 269440000.0 64957.0 64295.0 25597.0 51246.0 56701.0 65142.0 59532.0 29060.1 72724.0 37412.0 True False 64607.278729401194 66435.02020785166 29200.83510688753 57733.73834562927 63921.536256842766 60638.88686777381 56652.20972567523 31228.7122261978 54802.144651673814 35024.33412997533 1.8446397436035054 1.8968246465817522 0.8337299147079631 1.6483893207328173 1.8250607140632538 1.7313358947165949 1.6175099722221367 0.8916290060021705 1.5646876953692543 1.0 15.096070002467808 1.7605792986279623 24.99999999998163 1.151513872832834 1.62030072333215 0.30935701915182223 0.3258448336816782 13.96266547090613 15865.958677198265 0.15206702708301476 0.08433147214569582 57.6208019836898 -1.7605792986279623 0.468786850499316 HHSVEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 HHSVEIK 7 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 ; 136.11 0.0030116 89481000.0 112842.0 173897.0 191602.0 194488.0 177972.0 171738.0 178375.0 69342.0 147937.0 109281.0 False True 112234.4712099249 179685.05652204357 218577.89616556081 219110.1608586959 200635.67927731088 159866.15628776728 169746.3197913278 74516.65215154135 111479.90860423904 102306.59301982881 1.0970404535724485 1.7563389730632262 2.1364986333109206 2.1417012764390315 1.9611216966087823 1.5626183178319937 1.6591923822390215 0.7283660803473214 1.0896649503579137 1.0 16.642539595184957 1.8472254105913692 4.504593055774915 0.9288986423634682 1.8017802329060428 0.6141201588323216 0.29784408193153444 0.1498921769867705 4.608634569037774 0.1507070340081196 0.08513231807502299 70.34373281646506 -1.8472254105913692 0.8728815905425746 HHTAAFEER ddPTM_BT-474_Trastuzumab_2h_R1 1 HHTAAFEER 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 119.68 0.00078785 185330000.0 49778.0 85683.0 64114.0 71888.0 63144.0 45992.0 67552.0 15302.0 73320.0 33663.0 False True 49510.00077885574 88534.90685853272 73140.69391112195 80989.0134291573 71185.01411618973 42812.681293522655 64284.25168629996 16443.912941981576 55251.26843766474 31514.59851965574 1.5710179759382377 2.809329993631785 2.3208512037843003 2.569888789116074 2.2587948906216098 1.3585031478925638 2.0398245481758464 0.5217871625978501 1.7531960117849628 1.0 14.943732663179832 2.4621106399644423 1.299246070273952 1.1232437848795431 2.370490325419474 0.49701258970089013 0.48466044567948885 0.32345208591820723 1.1018401029325364 0.2463830542164743 0.17741225106494318 289.8081802993487 -2.4621106399644423 1.2472465405399307 HHVLHDQNVDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 HHVLHDQNVDKR 12 1 Q02218;A0A0D9SFS3;E9PDF2;E9PCR7;Q02218-2;E9PFG7 Q02218 OGDH 2-oxoglutarate dehydrogenase, mitochondrial 0 ; 160.69 2.5945e-05 207716000.0 94272.0 95627.0 89664.0 86007.0 96698.0 143427.0 88630.0 8893.9 94178.0 47132.0 False True 93764.4500266038 98809.8868872577 102287.91182654085 96895.47738150353 109011.91712605032 133512.2290808418 84342.62830052062 9557.607980309102 70969.09382054527 44123.995408264665 2.1250217519749173 2.2393685334476774 2.3181924229686093 2.195981494535159 2.4705812816223753 3.025841786209465 1.9114911856944574 0.2166079452206386 1.608401350872509 1.0 15.429275811791324 1.9482098936308057 6.785643590784628 0.8955042091637879 2.3874460926715915 0.7340811056890719 0.3909982031377653 0.11138590392812352 11.902567084749107 0.162533502906771 0.10160880581953963 88.75848763421055 -1.9482098936308057 1.4919418835078035 HHYDS(ph)DEKSETR ddPTM_BT-474_Trastuzumab_2h_R1 2 HHYDSDEKSETR 12 1 Q9BQ39 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 1 HHYDS(0.997)DEKS(0.003)ETR;HHYDS(1)DEKSETR 221.78 1.5931e-11 2823300000.0 2293900.0 1754930.0 1312350.0 1654450.0 1691710.0 1915880.0 1943050.0 465430.0 2208900.0 993800.0 True False 2281549.8972762506 1813341.7841724122 1497117.4728493134 1863903.200365418 1907139.2409492498 1783439.7250964101 1849057.24832818 500162.7500056523 1664546.1927435563 930374.8331650143 2.4522910723140634 1.9490443201302632 1.609155170025735 2.0033895306740637 2.049861166666998 1.916904522265913 1.9874325727813678 0.5375927337846872 1.7891135200647963 1.0 19.827452546571358 1.7621284810453373 24.999997669163918 1.0780265438654888 1.9781770970581298 0.5833674321121094 0.3428156723174209 8.35186867760854 8865.927086316466 0.1492541662507127 0.08277235582918874 57.82670957963094 -1.7621284810453373 0.900150553192641 HHYEQQQEDLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HHYEQQQEDLAR 12 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8YE38;K7EMY3;Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5 Q14839-2;Q12873-3 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 0 ; 266.78 9.2009e-22 1131860000.0 676520.0 789480.0 693220.0 815280.0 703410.0 688520.0 734880.0 183601.0 736570.0 448000.0 False True 672877.6914884375 815757.3645492613 790819.3504237443 918494.3644074586 792985.0940622876 640924.2330017432 699331.0468857791 197302.23892698722 555052.1930323333 419408.2564479031 1.6043501317481077 1.9450198035159347 1.8855598054302398 2.189976831134581 1.890723613260075 1.528163127807561 1.6674231757110072 0.47043003062934496 1.3234174208520362 1.0 18.677995736966214 1.8937722959469874 5.675707169357958 0.8984750081449631 1.8452762085330618 0.7131949841767224 0.25855253339427714 0.11495268281266852 5.0656260373559885 0.11573841547526828 0.06957712611168873 78.30189920330437 -1.8937722959469874 0.9468012003880988 HIADLAGNSEVILPVPAFNVINGGSHAGNK ddPTM_BT-474_Trastuzumab_2h_R1 2 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5 P06733 ENO1 Alpha-enolase;Enolase 0 ; 169.57 1.1187e-12 6235600000.0 4756600.0 4370200.0 3847500.0 3694800.0 3851400.0 5109200.0 4317200.0 3778200.0 5397800.0 4793900.0 False True 4730990.994107944 4515659.465158308 4389194.556930494 4162561.301163623 4341852.960963722 4756013.029763134 4108360.5426944313 4060148.469310856 4067584.5168143217 4487949.197735722 1.0541543109478249 1.006174371901662 0.9779955974423569 0.9274974198156555 0.9674469940868072 1.0597296939463257 0.9154204652689022 0.9046779030741475 0.9063347951591153 1.0 22.09762491447998 2.1967733645925906 24.99992714975781 0.9213359314253079 0.993550498895597 0.33649566999438163 0.0449708693364252 158.4533572449332 94796.44504091538 0.017103977813647524 0.012632229743507618 157.31617000212597 -2.1967733645925906 0.07221456747028909 HIAEDADR ddPTM_BT-474_Trastuzumab_2h_R1 5 HIAEDADR 8 0 H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5 H7BYY1;P09493-3 TPM1 Tropomyosin alpha-1 chain 0 ;;;; 154.49 0.0004242 4170806000.0 1632980.0 1860640.0 1700590.0 1698800.0 1528100.0 1672810.0 1846000.0 1421660.0 2154190.0 1697890.0 False True 1624188.2171211336 1922570.2776193698 1940018.2902067362 1913867.9058181106 1722694.4772416966 1557172.5820711781 1756701.9275951833 1527751.4882432055 1623318.739167113 1589529.2065632357 1.0218045761064278 1.209521831798367 1.2204986748254236 1.2040470209139071 1.083776548507958 0.9796438943314437 1.105171216950078 0.9611345811923762 1.0212575726601052 1.0 20.600168094624742 3.0260666642348713 4.2114295885494535 1.0152570913899477 1.1704328021735328 0.5555466020859388 0.06324067838582013 0.14987454015631338 6.1279582065266505 0.018834730587907873 0.02204905133933698 1061.8585400533566 -3.0260666642348713 0.15517571078358516 HIAEEADR ddPTM_BT-474_Trastuzumab_2h_R1 9 HIAEEADR 8 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain 0 ;;;;;;;; 187.0 0.00020453 24215929000.0 6304069.0 7386478.0 6723214.0 6811422.0 6179277.0 6775801.0 7249652.0 5662860.0 8234088.0 7037160.0 False True 6270128.592951913 7632332.455009766 7669784.091976321 7673747.326809172 6966171.298505745 6307405.825389897 6898958.636399932 6085451.368620423 6204907.343526363 6588042.423984211 0.9517438093788056 1.1585129487362964 1.1641977386262659 1.1647993186674663 1.0573962415823144 0.9574021263778392 1.0471940209862356 0.923711624331065 0.9418438656279718 1.0 22.651418414715486 2.9280283631283677 3.699484063052662 0.9721091679284807 1.117198507913237 0.48325799644870193 0.06614125949169371 0.19427775162602498 5.135256058673228 0.0207572736434924 0.022784064736600444 847.282747113049 -2.9280283631283677 0.14508933998475626 HIAEEADRK ddPTM_BT-474_Trastuzumab_2h_R1 4 HIAEEADRK 9 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain 0 ;;; 166.19 3.9554e-05 2595820000.0 2911430.0 2619250.0 2429360.0 2280580.0 2263300.0 3144550.0 3201870.0 2676870.0 4289970.0 3081300.0 False True 2895755.184370285 2706430.152879939 2771392.7716243425 2569301.194166862 2551517.8393698884 2927174.6599744875 3046983.315768791 2876631.632270435 3232764.3761528726 2884648.7959663463 1.0038501700517126 0.9382182526567485 0.9607383663133024 0.8906807642440077 0.8845159393191017 1.014742128770617 1.0562753150502895 0.9972207487763772 1.1206786700250313 1.0 21.459964251744175 2.5730873820324938 5.74044455686184 1.0385096223890564 0.9350151965876371 0.5683382780084396 0.044967902205010055 0.17464826037154665 8.45835025165524 0.014752157199273284 0.01380906975246559 374.18586860350325 -2.5730873820324938 -0.10349442580141932 HIAELIFYMEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 HIAELIFYMEELR 13 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 107.37 0.0013003 68201000.0 87093.0 66643.0 70329.0 68928.0 53224.0 72147.0 70583.0 36771.0 88268.0 63328.0 False True 86624.10096494197 68861.17196845585 80230.71188937353 77654.27773265302 60001.76091663632 67159.64770577017 67168.63063675561 39515.0387393546 66515.53413060264 59286.35282217144 1.461113676949731 1.1615012341036384 1.353274540770359 1.3098170832936191 1.0120669945174523 1.132801133967788 1.1329526516536943 0.6665115470651296 1.121936684655152 1.0 15.855412427294034 2.879947729898069 0.8529674648730472 0.9155753346432703 1.3378683561764717 0.49413664250358513 0.14889505890940039 0.4677041104510846 0.7466848289461082 0.08785565107134267 0.0970000318465205 758.4862808893857 -2.879947729898069 0.42229302153320136 HIAFT(ph)PESQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HIAFTPESQR 10 0 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3;E9PQP7;H0YEN2 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 HIAFT(1)PESQR 116.19 0.0099716 0.0 79578.0 102020.0 88429.0 90223.0 76292.0 84270.0 77336.0 79604.0 92263.0 78038.0 True False 79149.56088994694 105415.67402760773 100879.03456135327 101645.22254922744 86007.33398188815 78444.6132502425 73594.96222779037 85544.45470092157 69526.01991086005 73057.54802830693 1.0833864949762562 1.442912838886453 1.3808160454860408 1.3913035037781984 1.1772545931676175 1.0737372847477484 1.0073560393687893 1.170918775809126 0.9516610095362281 1.0 16.156745714049222 3.004870445912132 3.1356084897277423 1.0595174482488772 1.3364444058604936 0.6101868347526004 0.10590132634637177 0.16973547725899452 3.4491266539063012 0.03226782395858242 0.03737550522426758 1011.2777356943761 -3.004870445912132 0.27692695761161645 HIANYISGIQTIGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIANYISGIQTIGHR 15 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ; 225.31 5.8774e-13 2929300000.0 760020.0 877810.0 768300.0 1016020.0 874760.0 879700.0 910260.0 679790.0 1003560.0 863960.0 False True 755928.1367661611 907027.3752026493 876469.9618166855 1144648.027825121 986155.5008912678 818888.4095910572 866227.2462691172 730519.3817036756 756246.0850150405 808821.3331266311 0.9346045978337357 1.1214187089952075 1.0836385316749098 1.4152050408961112 1.2192501118623102 1.0124466010626971 1.0709747762470287 0.9031900517259275 0.9349976985543242 1.0 19.625461524088855 2.2815645619994727 1.8564960975573812 0.9479524240597863 1.1580682882959623 0.32512554239092495 0.1209784045751073 0.40161334746828253 2.8019154528676484 0.062383857329995546 0.041595454592029235 191.23375906199743 -2.2815645619994727 0.210115864236176 HIDALEDKIDEEVRR ddPTM_BT-474_Trastuzumab_2h_R1 4 HIDALEDKIDEEVRR 15 2 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 ;;; 212.7 4.4578e-10 1381840000.0 729082.0 740137.0 632692.0 641511.0 636971.0 792210.0 827210.0 709275.0 1189530.0 796266.0 False True 725156.703520625 764772.0126227348 721769.5341425522 722726.2268243951 718085.4812270917 737446.3873617487 787194.6920509278 762204.7021254719 896386.2703853695 745447.6221623801 0.9727802221933506 1.0259232035703578 0.9682364161936112 0.9695197963445437 0.9632943480912625 0.9892665365576973 1.0560026870398334 1.0224792184788023 1.2024805549518685 1.0 19.507747461551475 1.910092783661502 1.5610110847066334 1.0885736712723264 0.9812627597182169 0.4059192656760239 0.05259540162097674 0.3662419264955813 1.6659290735842307 0.034572956399484635 0.015532883312272983 81.30041896767929 -1.910092783661502 -0.10731091155410954 HIDCAAIYGNEPEIGEALKEDVGPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 HIDCAAIYGNEPEIGEALKEDVGPGK 26 1 P14550;Q5T621;V9GYP9;V9GYG2 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] 0 ; 297.99 1.0776999999999995e-70 710230000.0 2015020.0 1506670.0 1434760.0 1240970.0 1192420.0 1912330.0 1747130.0 1635920.0 2881200.0 1805190.0 False True 2004171.3562097698 1556818.600148751 1636761.7368425177 1398076.6747604788 1344267.618972934 1780135.1282406114 1662614.6472152628 1758000.6574334379 2171166.8661020095 1689981.2286990846 1.1859133830454098 0.9212046700348029 0.9685088266349952 0.8272734933492082 0.7954334617123089 1.0533460952172384 0.9838065766535833 1.040248629735795 1.2847283917900867 1.0 20.688575791326816 1.5488499736012622 3.339665652947253 1.1477610519223262 0.9527766198141615 0.24823805807112165 0.12227406942968842 0.2554339166600824 6.37264904076186 0.08097983813822499 0.03192950543135433 35.387507433515644 -1.5488499736012622 -0.19498443210816474 HIDDS(ph)SPEDLIAAFTETR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIDDSSPEDLIAAFTETR 18 0 O95197-7;O95197-2;O95197 O95197-7 RTN3 Reticulon-3 1 HIDDS(0.5)S(0.5)PEDLIAAFTETR;HIDDS(0.5)S(0.5)PEDLIAAFTETR 109.38 0.00023451 31319000.0 32003.0 41596.0 43852.0 36961.0 36964.0 48298.0 45350.0 25003.6 37835.0 38104.0 True False 31830.699403867555 42980.49771468703 50025.98043158306 41640.25881030328 41671.14629720703 44959.27294126274 43156.24724617639 26869.495597708163 28511.071213025687 35672.17009752435 0.8923118306748768 1.2048747692439905 1.4023811922520202 1.167303774804357 1.1681696455046622 1.2603458892001334 1.2098015659880315 0.7532341184808632 0.7992525023030308 1.0 15.122511363610545 1.7559882628437988 9.099016780788734 0.8355802555453525 1.1969989604557976 0.5711489927553736 0.13279142629515653 0.09053133838667127 29.338309153460617 0.06264175988825565 0.034068451386280146 57.014886334286324 -1.7559882628437988 0.36141870491044503 HIDFSLR ddPTM_BT-474_Trastuzumab_2h_R1 7 HIDFSLR 7 0 P46781 P46781 RPS9 40S ribosomal protein S9 0 ;;;;;; 197.65 0.00041751 5528010000.0 1223744.0 1290743.0 1572478.0 1316265.0 845570.0 1172357.0 1449749.0 902728.0 1870486.0 1228372.0 False True 1217155.4982747398 1333704.6004843789 1793869.234176206 1482904.0140403102 953248.3274139527 1091314.7200215333 1379619.1022910005 970094.1473199028 1409529.7885282815 1149976.2472978223 1.0584179465747865 1.1597670852926534 1.5599185099617345 1.2895083855208236 0.8289287101832454 0.9489889226719856 1.1996935636999335 0.843577551796743 1.2257033933008181 1.0 20.13317263200727 3.2616959244251844 24.691346769033583 0.9999158970216246 1.2801802776150797 0.3562375629587914 0.17005334115872384 214.75784702560742 229200.30686307265 0.047350984982126074 0.06407103152205405 1826.820701688952 -3.2616959244251844 0.28026438059345504 HIDIHPENTHILDGNAVDLQAECDAFEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIDIHPENTHILDGNAVDLQAECDAFEEK 29 0 D6RAY7;D6R9P4;D6RFF8;P46926;D6R917;D6RB13 D6RAY7 GNPDA1 Glucosamine-6-phosphate isomerase;Glucosamine-6-phosphate isomerase 1 0 37.344 0.070552 313640000.0 95539.0 85474.0 57091.0 65240.0 56781.0 87566.0 76933.0 28968.0 104460.0 60676.0 False True 95024.62863938088 88318.95041987584 65128.916556132244 73499.37731079212 64011.723782645575 81512.76852819201 73211.45687739996 31129.739256523484 78717.23269228652 56803.60573266289 1.672862618732324 1.5548123975709376 1.1465630696517948 1.2939209820007767 1.1268954313200916 1.4349928578798123 1.2888522820533261 0.5480240005014935 1.3857788018379789 1.0 15.7936948903978 7.9999999382782505 0.2762486249009 0.9684863750657279 6.3069641989083225 0.3676684128855372 0.23971082845545025 51.56090485465636 0.7266623865956936 0.2805413416552383 132.2627315272243 99999985.78804298 -7.9999999382782505 5.338477823842594 HIDLVEGDEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 HIDLVEGDEGR 11 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;;;; 162.68 2.4837e-05 8002620000.0 3867070.0 4910690.0 4164670.0 4612590.0 4434340.0 4596030.0 4392930.0 3517600.0 4634560.0 4125730.0 False True 3846250.124791871 5074139.348075204 4751019.336039434 5196543.421060495 4999026.91460764 4278317.263990884 4180427.193277736 3780101.1740108686 3492434.787922302 3862422.37918484 0.9958129244279125 1.3137194356113107 1.230062087886445 1.3454104473569304 1.294272460088293 1.1076772149642056 1.0823329980187228 0.9786866383082253 0.9042084073309912 1.0 21.881074509644662 2.1947597716655465 1.5649960146396988 0.9579221879895274 1.2431466003418834 0.6006287847273262 0.09552355590226566 0.25534733331340986 1.221332841647422 0.05422732067329733 0.03137640197312083 156.5884667381616 -2.1947597716655465 0.28522441235235596 HIDSSPYSPAYLS(ph)PPPESSWR ddPTM_BT-474_Trastuzumab_2h_R1 3 HIDSSPYSPAYLSPPPESSWR 21 0 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 HIDSSPYSPAYLS(1)PPPESSWR;HIDSSPYSPAYLS(1)PPPESSWR;HIDSSPYSPAYLS(1)PPPESSWR 227.25 1.3648e-25 1877490000.0 310784.0 411061.0 410112.0 418990.0 396819.0 383310.0 372059.0 289310.0 344743.0 330456.0 True False 309110.7734753487 424742.9168933779 467852.204842593 472034.0910399879 447351.5475195159 356812.6819146841 354061.08476659603 310899.781286413 259785.70696952875 309366.01516238454 0.9991749524041875 1.3729462710066347 1.51229347088115 1.5258110713687145 1.4460267954277508 1.1533674173208555 1.144473107625449 1.004957771858759 0.8397357635846608 1.0 18.238955195303813 2.1758519044237956 1.4041308466441649 0.940471446337473 1.3826108450847516 0.5890988347144168 0.14999491929359748 0.30251368830555053 1.1484099963640182 0.09745569616428344 0.05378322320106556 149.9173526159027 -2.1758519044237956 0.4421393987472786 HIDYFNNQIIVDLVEQQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIDYFNNQIIVDLVEQQHK 19 0 J3QRN6;O94832;K7EIG7 J3QRN6 MYO1D Unconventional myosin-Id 0 199.12 4.0994e-16 189040000.0 276720.0 319570.0 259200.0 263120.0 267090.0 355440.0 363120.0 274700.0 417170.0 317550.0 False True 275230.17026648234 330206.6942658553 295693.1069932118 296430.9650216986 301102.32833354146 330869.2694157613 345554.4983468922 295199.5088983357 314364.04329160607 297283.68713176704 0.9258165926356068 1.1107460939136413 0.9946496218682519 0.997131621589144 1.012845108450508 1.112974857813533 1.162372889279087 0.9929892613565857 1.0574547373407286 1.0 18.181480774749993 2.8028031174270454 17.205067804857414 1.0668555257692744 1.0125584812490547 0.17011507457840502 0.06244083678027454 17.096795084456215 4577.25069588194 0.019018103243564313 0.020171880662138736 635.042976915737 -2.8028031174270454 -0.05429704452021977 HIEAAFDQEAAAVLMAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HIEAAFDQEAAAVLMAR 17 0 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 127.78 0.00022733 0.0 28371.0 35342.0 31742.0 33560.0 29335.0 39161.0 36116.0 31340.0 41003.0 34686.0 False True 28218.25368831443 36518.33710530982 36210.99769359005 37808.692559015675 33070.638367832675 36453.892245078285 34368.93110348192 33678.7499412954 30898.360062050793 32472.30978382137 0.8689943486057026 1.1245993077925212 1.1151346465545053 1.1643364087963044 1.0184258091892622 1.1226146981155203 1.058407342510803 1.0371528901240994 0.9515294805867256 1.0 14.986922387984556 1.4884055154602505 2.785664349933565 0.9767419002540678 1.0754542446927482 0.1676573900628181 0.07858469243296902 0.3995493669368729 6.196331349260726 0.05809340576488968 0.020178748103680446 30.7897041185272 -1.4884055154602505 0.09871234443868038 HIEDTGS(ph)TPSIGENDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HIEDTGSTPSIGENDLK 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 HIEDT(0.026)GS(0.955)T(0.018)PSIGENDLK;HIEDT(0.431)GS(0.562)T(0.007)PSIGENDLK 213.93 1.4809e-13 611030000.0 820260.0 628980.0 568060.0 590280.0 540020.0 805030.0 739380.0 632790.0 1019090.0 786940.0 True False 815843.8112994543 649915.2190735607 648037.9103339666 665009.3874772287 608788.3460506911 749380.1709367835 703613.3646941094 680012.0030425116 767948.9246063782 736716.81546677 1.107404899917414 0.8821777994327258 0.8796295899984066 0.9026662260395009 0.8263532652841299 1.0171889051588843 0.9550662478747864 0.923030381234978 1.0423936422841389 1.0 19.490750646766408 2.70413937864071 24.98152563147258 0.9751784838221437 0.914398202831638 0.15612038940054473 0.07577001050136939 1293.4080014097822 938701.3504001504 0.024401551209008488 0.02300714215168644 505.98702296090966 -2.70413937864071 -0.0607802809905057 HIEIFTDLSSR ddPTM_BT-474_Trastuzumab_2h_R1 7 HIEIFTDLSSR 11 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;;;; 215.08 1.3081e-11 5143360000.0 3629923.0 4706092.0 4136767.0 4358012.0 4346783.0 4141562.0 4313407.0 3687093.0 4857334.0 4192202.0 False True 3610379.897890358 4862731.427327308 4719187.836176657 4909735.872362958 4900320.049648637 3855265.567128291 4104751.0245951023 3962242.6023388887 3660309.12064096 3924652.079235299 0.9199235562796243 1.239022295264142 1.2024474376073024 1.250999011693184 1.2485998633039193 0.9823203405789469 1.0458891493370017 1.0095780523584434 0.9326455050645291 1.0 21.904133333950128 2.7288899162046723 24.682526240837326 1.0002265453689383 1.1819691802693668 0.4702130972336862 0.0941315595534144 506.5537015292842 1292874.131159414 0.030020106836757005 0.02863809953322215 535.6608624311896 -2.7288899162046723 0.18174263490042852 HIELGVT(ph)GGGSPENGDGALLAITPPAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIELGVTGGGSPENGDGALLAITPPAVK 28 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 HIELGVT(0.5)GGGS(0.5)PENGDGALLAITPPAVK 91.813 0.010245 82042000.0 104770.0 101620.0 84151.0 89772.0 86310.0 106850.0 109380.0 100540.0 133370.0 107360.0 True False 104205.92996104137 105002.36026941278 95998.72934639579 101137.12599546937 97301.06690055014 99463.71099784519 104088.87152782302 108042.80533177534 100502.75056643944 100508.19288447972 1.0367904045475347 1.0447144382557796 0.9551333736219202 1.0062575307837096 0.9680908999367273 0.9896079925759383 1.0356257389629797 1.0749651568798537 0.9999458519959011 1.0 16.61695358133407 2.2161576738839956 12.32675160899948 1.0383601223576364 0.9989090203131523 0.11086921412584005 0.03291543187058875 1.262257061192012 689.3216930566264 0.012609615040849398 0.009401126417351975 164.49688331451983 -2.2161576738839956 -0.0394511020444841 HIEPELAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HIEPELAGR 9 0 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 0 104.2 0.0032991 182510000.0 183480.0 225540.0 232070.0 262760.0 240570.0 223430.0 194580.0 183130.0 251830.0 228080.0 False True 182492.16406654456 233046.96255819072 264743.4388113996 296025.38905861013 271205.16352989635 207984.80999764678 185167.42203221613 196796.09051529775 189769.87084911476 213523.73913088796 0.8546692035712181 1.091433502929317 1.2398782444003311 1.386381627932946 1.2701405690711056 0.9740594223584391 0.867198292732736 0.9216590685247587 0.888753033370157 1.0 17.70403694907184 2.5944519272009727 5.029693456243063 0.9131422886288311 1.1792228098924393 0.44437604190562185 0.13369340955915365 0.2181168197542939 8.132068513565626 0.047771359178400315 0.04468926252507105 393.05373470922126 -2.5944519272009727 0.26608052126360826 HIEPELAGRDS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 5 HIEPELAGRDSPIR 14 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR 218.14 3.3276e-12 5637850000.0 2822200.0 3257560.0 2792900.0 2977130.0 2914350.0 3021640.0 2665230.0 2605750.0 3217650.0 2946490.0 True False 2807005.588775896 3365985.915363396 3186116.043678017 3354034.352747982 3285475.197794213 2812761.13897547 2536302.642732672 2800204.2967303935 2424703.2718010307 2758442.4855829966 1.0176052621893386 1.2202487211372817 1.1550416803432577 1.2159159997998317 1.1910617005668067 1.019691783923852 0.9194691047533748 1.0151396345458226 0.8790117192849753 1.0 21.395422469451074 2.601733286499958 3.877207557016648 0.9605409750257917 1.1658051112732577 0.6981700753487967 0.06445210504695816 0.12779030229924793 3.3604148910688925 0.020810134149304087 0.019365291774897833 399.69920688564235 -2.601733286499958 0.20526413624746598 HIEPELAGRDS(ph)PIRAEMPGNLQHYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 HIEPELAGRDSPIRAEMPGNLQHYGR 26 2 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR 297.54 8.909599999999995e-71 5284020000.0 1172440.0 1476590.0 1419900.0 1683060.0 1646720.0 1623310.0 1649350.0 1308600.0 1894230.0 1619330.0 True False 1166127.7133103292 1525737.4055324954 1619809.578007953 1896135.2234319698 1856420.0311258717 1511094.400560711 1569564.6393711339 1406254.376936158 1427422.3978815803 1515982.973021836 0.7692221707384127 1.006434394504587 1.0684879756790129 1.250762876084531 1.224565225442761 0.9967753117626509 1.0353445040629266 0.9276188466240132 0.9415820779545259 1.0 20.531822119089835 -0.9025974629387006 6.401860702733338 0.9999999971667772 1.0300408279080076 0.001523197996379566 0.13269126528285347 6.108870337968582e-09 9.542335540038487e-10 0.13665310401704855 0.03220944262713311 0.1251418402316468 0.9025974629387006 0.030040830741230318 HIESMIR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIESMIR 7 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 ; 147.69 0.0021342 307780000.0 30377.0 34560.5 35365.0 35399.5 24934.0 38151.0 29905.0 23089.1 37540.0 36219.0 False True 30213.453607201976 35710.82535023656 40344.08460190952 39881.07307040748 28109.197104603398 35513.71116779402 28458.380901806035 24812.125886074162 28288.77001022822 33907.472411354036 0.8910559076967617 1.0531845286786599 1.189828723075217 1.176173575741174 0.8289971238077579 1.0473712324219757 0.8392952608368605 0.7317598193419376 0.8342930923024398 1.0 15.049315624086345 2.6023034077434324 1.3287014283341312 0.8211011067632717 1.0669261825088208 0.3082142623515428 0.12388223197752578 0.4359337723304243 1.5656314408247463 0.06093570512072034 0.050676339267285674 400.22425764473803 -2.6023034077434324 0.24582507574554902 HIEWESVLTNTAGCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HIEWESVLTNTAGCLR 16 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30 O60716-13 CTNND1 Catenin delta-1 0 264.0 5.5577999999999996e-27 753480000.0 237760.0 339090.0 292110.0 312680.0 287630.0 371730.0 378870.0 262390.0 377250.0 298660.0 False True 236479.9265776191 350376.40566576674 333236.5489343643 352265.255940197 324257.9755834232 346033.18005829677 360542.61067604955 281970.8741894226 284281.79239101184 279599.26310430985 0.8457816517541956 1.253137800778295 1.1918362918218566 1.2598933631980915 1.1597239992097281 1.2376040487960889 1.2894977142394766 1.008482179311853 1.01674728765274 1.0 18.09300103287134 1.6394570510747128 7.502177289311947 1.0077069457608399 1.1847538402780893 0.29627513243903913 0.11830760146796908 0.14125842455647084 16.146115994045086 0.05808023754613603 0.02943135767979279 43.59704472009936 -1.6394570510747128 0.17704689451724942 HIGYDDSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIGYDDSSK 9 0 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 112.75 0.0019122 181720000.0 310760.0 295130.0 252700.0 244360.0 245110.0 331780.0 313060.0 278380.0 445090.0 319540.0 False True 309086.90268868173 304953.22364014736 288277.9634922248 275295.95094520506 276323.3056192082 308844.82952611207 297916.0917946632 299154.12918499706 335403.5334004386 299146.68362804275 1.0332285785023063 1.019410343921193 0.9636675894113135 0.9202707768858519 0.9237050609017848 1.0324193662468542 0.995886326338454 1.0000248893180563 1.121200908305831 1.0 18.19049354364764 1.4133091029208111 6.8022338545801535 1.0619377221800987 0.9834577525729242 0.29509556782894464 0.04653955409971582 0.25890135851866747 19.871147757423618 0.031780196742433986 0.011947402716766267 25.900556945932472 -1.4133091029208111 -0.07847996960717452 HIIEDPCTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 HIIEDPCTLR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ;; 126.71 0.00037544 1228430000.0 961110.0 1168350.0 1002530.0 1035950.0 985440.0 1059380.0 1080370.0 960240.0 1283240.0 1080150.0 False True 955935.4905493588 1207237.8234675094 1143677.5098530275 1167101.1637816536 1110929.942839512 986147.5541122807 1028108.3756858119 1031897.9847999212 967002.6965350347 1011213.9022370601 0.9453346007551799 1.1938501051031785 1.1309946464570202 1.1541585427175511 1.0986102350668387 0.9752116262747907 1.0167071214224577 1.0204547054951505 0.9562790764602631 1.0 19.94765677235708 2.80956086228254 5.44814256519282 0.9991103354537187 1.1150570788902872 0.42930943296597635 0.06332692062428708 0.20260582647088346 11.268583543082007 0.01878881445392507 0.019877688003988005 645.00170445055 -2.80956086228254 0.11594674343656841 HIISATSLST(ph)SPTELGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 HIISATSLS(0.001)T(0.974)S(0.025)PTELGSR;HIISATSLS(0.001)T(0.946)S(0.053)PTELGSR 369.82 1.5315999999999993e-106 363790000.0 392920.0 439290.0 442920.0 495230.0 459700.0 467820.0 446520.0 395620.0 541720.0 438350.0 True False 390804.562377516 453911.5020935875 505279.2860703447 557926.0672229236 518240.0701446286 435480.70452982566 424920.1217279526 425143.1733176547 408220.36467610055 410374.1277096839 0.952312867671784 1.1060919084419079 1.2312649651924468 1.3595546832758039 1.262847814107944 1.0611797263152594 1.0354456897647288 1.0359892220554874 0.9947517085309359 1.0 18.646580252649017 2.580373575766322 5.221237797137722 1.024680087129308 1.190175947580782 0.38158815625391995 0.10060296267176 0.26708609493499924 10.93438195398481 0.03657148484194016 0.03417869146786551 380.51657213032695 -2.580373575766322 0.16549586045147402 HIISATSLSTS(ph)PTELGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 HIISATSLS(0.001)T(0.325)S(0.673)PT(0.001)ELGSR;HIISATSLST(0.05)S(0.947)PT(0.003)ELGSR;HIISATSLST(0.051)S(0.948)PTELGSR;HIISATSLST(0.008)S(0.878)PT(0.114)ELGSR 289.76 2.4845e-49 9204700000.0 1911200.0 2097470.0 1978990.0 2012050.0 2063510.0 2064170.0 2088900.0 1839650.0 2250850.0 2044840.0 True False 1900910.3115542838 2167283.0210026107 2257614.59031056 2266775.323699868 2326285.7671179944 1921478.786433526 1987851.9266270767 1976934.0245534177 1696158.1773447564 1914336.5605243996 0.9929864741409745 1.132132701059066 1.1793195809268384 1.1841049115621152 1.2151916309223851 1.003730914436054 1.0384025294290669 1.0326992992349635 0.8860292449725367 1.0 20.86841306242619 2.7178209333558376 23.428050520418484 1.0012187393712222 1.144820163055212 0.5402185149556228 0.06822768113157299 303.3305381604679 342648.5176978582 0.02275534239466515 0.021480948067377832 522.1808409939364 -2.7178209333558376 0.14360142368398976 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 HIKEEPLS(0.916)EEEPCT(0.03)S(0.032)T(0.035)AIAS(0.987)PEK 75.184 0.023229 980200000.0 769870.0 525610.0 421460.0 448310.0 536390.0 869780.0 698400.0 681300.0 1319000.0 783480.0 True False 765725.1054605979 543104.6111120454 480797.9046040094 505066.00003374054 604696.0870673861 809654.1558418886 664615.723852913 732142.0655713014 993950.1236944865 733477.6356290249 1.0439651712133224 0.7404514939931098 0.6555045188142385 0.6885908656241437 0.8244233466625104 1.1038566365388023 0.9061158671633438 0.9981791264070674 1.3551198774344118 1.0 19.484393451979667 2.8345753986433384 4.6112268162706425 1.0522168544095614 0.7690952749781284 0.47418790710673764 0.1476728199526936 0.2125562488941166 7.614332570195833 0.04673613982198703 0.04963055802218365 683.2433267815113 -2.8345753986433384 -0.283121579431433 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 HIKEEPLS(0.997)EEEPCT(0.003)ST(0.001)AIAS(0.999)PEKK;HIKEEPLS(0.999)EEEPCT(0.073)S(0.068)T(0.151)AIAS(0.709)PEKK;HIKEEPLS(1)EEEPCTSTAIAS(1)PEKK;HIKEEPLS(1)EEEPCTSTAIAS(0.999)PEKK 152.82 1.5418e-07 5067930000.0 1125630.0 653663.0 542841.0 520848.0 523869.0 1166420.0 934720.0 802074.0 2003580.0 962850.0 True False 1119569.7331492505 675419.7778073715 619268.2943414436 586787.3033962521 590580.6119351683 1085788.130857338 889504.0226228441 861928.8347292467 1509824.5555965116 901400.0886626417 1.2420341946163942 0.7493007669984314 0.6870071371528466 0.6509732035491992 0.6551814442478928 1.2045573819149085 0.9868026793103081 0.9562111714544467 1.674977154524753 1.0 19.78180806639506 2.7335222679786195 24.91335590004576 1.1299098474083862 0.7800428505622338 0.3456738200817251 0.250096819534299 499.62944898343903 2470533.4673538134 0.08017599798859124 0.07776596286035534 541.40500712567 -2.7335222679786195 -0.3498669968461524 HIKEEPLS(ph)EEEPCTSTAIASPEK ddPTM_BT-474_Trastuzumab_2h_R1 6 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 HIKEEPLS(0.999)EEEPCT(0.001)STAIASPEK;HIKEEPLS(0.94)EEEPCT(0.06)STAIASPEK;HIKEEPLS(0.823)EEEPCT(0.141)S(0.03)T(0.006)AIASPEK;HIKEEPLS(0.956)EEEPCT(0.02)S(0.015)T(0.01)AIASPEK;HIKEEPLS(0.761)EEEPCT(0.214)S(0.013)T(0.013)AIASPEK;HIKEEPLS(0.995)EEEPCT(0.005)STAIASPEK 286.74 1.017e-52 19157200000.0 5647130.0 4572980.0 4372460.0 4137960.0 4370180.0 5915760.0 5107820.0 4979880.0 8218850.0 5302750.0 True False 5616726.47953512 4725188.874875216 4988064.361896372 4661825.3117254 4926696.518913752 5506817.4354011435 4860735.232832736 5351503.932918262 6193424.544447625 4964323.955087316 1.1314182012193699 0.9518292757733828 1.0047822033823413 0.9390654908707312 0.9924204309561618 1.1092784204298136 0.9791333677673423 1.0779924882690568 1.2475867007230173 1.0 22.24316583329127 1.5223496968086134 5.371209494689248 1.135768597901273 1.0130793228166766 0.225724855597352 0.08081509735356326 0.17529032713938095 11.020642430942837 0.04411049769401125 0.019476114886342058 33.292752085150994 -1.5223496968086134 -0.12268927508459648 HIKEEPLS(ph)EEEPCTSTAIASPEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 HIKEEPLS(0.997)EEEPCT(0.003)STAIASPEKK;HIKEEPLS(0.999)EEEPCT(0.001)STAIASPEKK 96.068 0.0034677 700703000.0 479652.0 514637.0 471709.0 486259.0 496791.0 600614.0 607864.0 536549.0 892190.0 639980.0 True False 477069.6069263471 531766.3814403644 538121.5270318713 547819.3395427414 560054.3891390479 559094.9678732783 578459.2960540189 576589.0109206161 672321.7292334979 599135.9284855565 0.7962627247747303 0.8875554880918542 0.8981626730216095 0.9143490041191008 0.9347701623481411 0.9331688207824721 0.9654892463488174 0.9623676089298592 1.122152248376982 1.0 19.19252382487149 4.494760883090522 0.2737666484245203 1.0411200973351273 0.6733674491584012 0.7025564986849001 0.04356324661527226 4.348483573514557 0.30238716703685553 0.05579752392667441 0.5365346486312189 31243.586621081693 -4.494760883090522 -0.36775264817672615 HIKEEPLSEEEPCTST(ph)AIAS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 HIKEEPLS(0.014)EEEPCT(0.094)S(0.196)T(0.697)AIAS(1)PEK 216.71 5.7461e-32 725610000.0 711170.0 529770.0 484230.0 443200.0 481760.0 835320.0 764570.0 684800.0 1298300.0 766230.0 True False 707341.1397384149 547403.0741972727 552405.3749973881 499309.07455768 543109.2803847651 777576.2945317734 727584.8281589648 735903.2533439398 978351.3613286965 717328.5453974932 0.9860769437893427 0.7631134683117068 0.7700869825154997 0.6960674822734092 0.7571276563151575 1.0839890584598095 1.0142978873868573 1.0258942824255708 1.3638818190158077 1.0 19.452274517007297 2.7348596651856694 24.27500795165181 1.0861317797910945 0.785926966272918 0.6151025385559935 0.11962129000875064 147.06744504847714 964630.06033169 0.03798336229708647 0.03711814263037193 543.07481782238 -2.7348596651856694 -0.3002048135181765 HIKEEPLSEEEPCTSTAIAS(ph)PEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 HIKEEPLSEEEPCTSTAIAS(1)PEKK 127.05 4.1499e-05 204520000.0 112390.0 68925.0 70342.0 61188.0 63456.0 131270.0 127790.0 120630.0 239010.0 116540.0 True False 111784.90472770276 71219.12695895761 80245.54217637538 68934.39452625292 71536.74546682085 122195.6138763418 121608.30949479333 129632.02314672827 180109.18806991586 109102.31742508637 1.0245878123025054 0.6527737323990324 0.7355072199220232 0.6318325417201682 0.6556849309451249 1.120009333992798 1.114626273436346 1.1881692910486374 1.650828252970753 1.0 16.73532222048121 2.5786413150871343 2.8084575723159904 1.2403913507588518 0.7283390102109771 0.6127163729989211 0.18944002107067184 0.1811901190534369 2.7836186098639693 0.0666810092708637 0.06059753209397511 379.00183709922965 -2.5786413150871343 -0.5120523405478746 HILAILQDCPSLRPPIDHLCELLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HILAILQDCPSLRPPIDHLCELLPR 25 1 E7EMD0;P16435;H0Y4R2 E7EMD0;P16435 POR NADPH--cytochrome P450 reductase 0 ; 124.86 9.5349e-05 425760000.0 38417.5 61247.0 63661.0 47951.8 62558.0 71539.6 63061.7 38020.0 57700.0 52829.6 False True 38210.664448585485 63285.56937040663 72623.91544866844 54022.49296339115 70524.39048968392 66594.23583810432 60011.164651911815 40857.24546164809 43480.60814038805 49457.969698303874 0.7725886178036114 1.279582840873813 1.4683966182129597 1.092290955187427 1.4259459278228825 1.3464813910545164 1.2133770354501603 0.8261003375366874 0.8791426013971453 1.0 15.593915396343432 1.7827764948017824 6.223697225652756 0.890491218709656 1.2478667228712332 0.38167924458283964 0.18931464477910215 0.18694809243873722 15.934649606376759 0.088101869893447 0.04945066499711336 60.64241592975481 -1.7827764948017824 0.35737550416157726 HILGFDTGDAVLNEAAQILR ddPTM_BT-474_Trastuzumab_2h_R1 4 HILGFDTGDAVLNEAAQILR 20 0 Q9Y224 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 ;;; 273.82 1.8314999999999998e-44 4600231000.0 686556.0 773395.0 731794.0 818016.0 759575.0 796995.0 831756.0 715206.0 832214.0 751587.0 False True 682859.6587795423 799136.985047849 834824.2343325252 921576.7417269308 856302.3738962512 741900.6115744271 791520.7846635216 768578.3034624796 627126.010796272 703620.0741939952 0.9704948505935761 1.1357506904038652 1.1864701775156512 1.309764709005222 1.2169953719372706 1.05440512399292 1.1249263824233804 1.0923200341361705 0.8912849900063637 1.0 19.424437117745544 1.418740120864034 3.3860693194528 0.9471876622192509 1.148712201316636 0.42237187414106947 0.08976785688751944 0.2298844587539168 4.602868407757517 0.07245019761192899 0.024603242742262256 26.22648696954107 -1.418740120864034 0.2015245390973851 HILLAVANDEELNQLLK ddPTM_BT-474_Trastuzumab_2h_R1 3 HILLAVANDEELNQLLK 17 0 O75367-2;O75367-3;O75367;D6RCF2;Q9P0M6 O75367-2;Q9P0M6 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A;Core histone macro-H2A.2 0 ;; 327.7 6.4797e-72 1546679000.0 1061536.0 1141845.0 1256386.0 1100124.0 1331186.0 1916245.0 1317637.0 1616891.0 2360808.0 1542644.0 False True 1055820.8081237376 1179850.620565121 1433274.22809712 1239399.5856017442 1500704.6465424157 1783779.4935055303 1253897.8644478528 1737551.6168261338 1779018.5016064672 1444191.1391960243 0.7310810733207441 0.8169629272354763 0.992440812851835 0.8581963647081461 1.0391315981746378 1.2351408654248865 0.8682353951748333 1.2031313374443096 1.231844215992656 1.0 20.461830265372836 4.298845711001674 0.5256774311740915 1.1286431562906256 0.5801708143687023 0.529073506065953 0.11789111551543827 2.1554383973881097 0.633172866923536 0.07170077358873875 0.6894862930077641 19899.6625092349 -4.298845711001674 -0.5484723419219233 HINMDGTINVDDFK ddPTM_BT-474_Trastuzumab_2h_R1 3 HINMDGTINVDDFK 14 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;; 188.25 8.543e-07 934860000.0 2286330.0 2083690.0 1987680.0 1908750.0 1937940.0 2387010.0 2449410.0 2185260.0 3349880.0 2312720.0 False True 2274020.6533151455 2153044.362032794 2267528.0667757248 2150397.5542914523 2184725.1719297 2222001.6171171386 2330922.680645132 2348335.197725436 2524346.960092256 2165120.2295807903 1.0502976334738883 0.9944225418140707 1.0472989147650071 0.9932000657108134 1.0090548977747558 1.0262716992614132 1.0765788655978907 1.0846211520457318 1.16591537301419 1.0 21.046015709659038 2.197959273804556 2.816862144459513 1.0911809464432694 1.017371325253848 0.3451786267709046 0.041364425435352084 0.25701850946186855 4.166444130062715 0.0165000751024349 0.011530334425517002 157.74633353019937 -2.197959273804556 -0.07380962118942125 HINWEELLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HINWEELLAR 10 0 P23443-5;P23443;P23443-3;P23443-2;P23443-4 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 0 ; 202.03 2.3099e-07 1021710000.0 692070.0 886250.0 840160.0 830580.0 742290.0 833910.0 855680.0 735000.0 949420.0 874930.0 False True 688343.972016206 915748.2955005625 958447.2251983681 935731.3428387148 836816.2316024719 776263.7645129912 814287.4893849667 789849.4322543747 715448.1625762082 819091.2183347403 0.8403752312418256 1.1180052660829787 1.1701349053002261 1.142401874044152 1.0216398526451884 0.947713450146835 0.9941352942843902 0.9642997197066576 0.8734657954589669 1.0 19.643664601408158 2.966279745289593 4.525686687298845 0.9590284455795692 1.0794280189725993 0.25093045449416806 0.0902063579421139 0.2776167577279478 13.36704857273072 0.02798291352377019 0.031069390944968973 925.2939984302143 -2.966279745289593 0.12039957339303009 HIPESK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIPESK 6 0 O95202 O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial 0 106.84 0.03178 1488300000.0 1803300.0 1826500.0 1696900.0 1541400.0 1502300.0 1323200.0 1891800.0 1646600.0 2199700.0 1863700.0 False True 1793591.233165467 1887293.9483574328 1935808.7702807945 1736541.081956696 1693609.000170276 1231730.29847776 1800286.4066221947 1769477.6532653787 1657613.4094698706 1744757.070406153 1.027989090050196 1.0816943976722784 1.1095004588977921 0.9952910416075605 0.9706847038459224 0.7059609153445252 1.031826399879907 1.014168495590891 0.950053986073834 1.0 20.734594747467924 3.492445153258559 3.269634959692132 0.9465626737072271 1.0732444553570972 0.2965749128579751 0.08765302006293481 0.3326411989794022 7.3423206752196855 0.02620155091056338 0.039955378985604265 3107.743403250217 -3.492445153258559 0.1266817816498701 HIPGAAFFDIDQCSDR ddPTM_BT-474_Trastuzumab_2h_R1 5 HIPGAAFFDIDQCSDR 16 0 P25325-2;P25325;B1AH49 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase 0 ;;;; 264.0 5.5577999999999996e-27 2431585000.0 1131384.0 1453680.0 1208683.0 1443280.0 1322578.0 1424922.0 1415530.0 1122923.0 1576971.0 1321154.0 False True 1125292.7542525802 1502064.8600318818 1378855.060339029 1625999.1000171667 1491000.468766029 1326420.496045593 1347055.4060502774 1206721.2163474557 1188347.6273787848 1236836.8206231531 0.9098150503682662 1.2144406076745835 1.1148237482486356 1.3146431872863735 1.2054948914075998 1.0724296640661983 1.0891132796091834 0.9756511095291258 0.9607958039121619 1.0 20.238223743359754 2.0487900100804 1.6400910637245025 0.9737315732252854 1.157647338660212 0.338734510807281 0.09971608420427637 0.40827585954563583 2.0671858458920593 0.06164149917539285 0.03150565392777396 111.8896744080278 -2.0487900100804 0.1839157654349266 HIPTALPVSGTLSSS(ph)NPDLLQSHHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIPTALPVSGTLSSSNPDLLQSHHR 25 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 HIPTALPVSGTLS(0.002)S(0.119)S(0.874)NPDLLQS(0.005)HHR;HIPTALPVSGTLS(0.001)S(0.031)S(0.965)NPDLLQS(0.004)HHR 246.31 1.1300999999999999e-38 1989270000.0 382440.0 570020.0 553710.0 630160.0 625110.0 567450.0 550670.0 326700.0 555260.0 536930.0 True False 380380.9855330782 588992.7711156334 631667.5550664023 709938.1913882401 704714.053182748 528223.5171336194 524031.98833631654 351080.0129489854 418423.61310280516 502662.6677110994 0.7567321187092784 1.171745603861219 1.2566430643093776 1.4123551180376706 1.4019621874679895 1.0508509007420677 1.0425122492635537 0.6984405954546943 0.8324143406314992 1.0 18.93923101982966 2.12775499518729 2.3178989324555106 0.8198534533224887 1.207974821714663 0.3724698992016806 0.18923917208745525 0.28894935777062764 3.065506311747121 0.09604661166076182 0.059213491597081995 134.20076613982658 -2.12775499518729 0.38812136839217437 HIS(ph)QISVAEDDDESLLGHLMIVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HISQISVAEDDDESLLGHLMIVGK 24 0 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 1 HIS(0.59)QIS(0.41)VAEDDDESLLGHLMIVGK 75.646 0.040133 28606000.0 33155.0 38197.0 29761.0 35277.0 36411.0 40841.0 35579.0 37579.0 35269.0 37867.0 True False 32976.49716386679 39468.364054425925 33951.090112750724 39743.0645829677 41047.72502509478 38017.75779937289 33857.90784502113 40383.33580229549 26577.42753038729 35450.29564043027 0.9302178322670414 1.113343720874732 0.9577096466871285 1.12109261333329 1.1578951397595898 1.0724242806035866 0.9550811138061976 1.139153710081876 0.7497096159637193 1.0 15.113510038529167 1.2473028559144537 24.99999944891681 0.8748547798458443 1.0595178696125507 0.36203977329748804 0.09601477615284702 161.86941079893307 462903.7473574122 0.06179267573859474 0.021809343367222962 17.672697993452715 -1.2473028559144537 0.18466308976670642 HISDLYEDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 HISDLYEDLR 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;E9PIA2;Q15149-4;Q15149-5;Q15149-8;E9PKG0 Q15149-3;Q15149-4;Q15149-5;Q15149-8;E9PKG0 PLEC Plectin 0 ;;;;; 238.73 3.2469e-12 4084570000.0 1357140.0 2669530.0 2975390.0 3150420.0 2960210.0 2704110.0 2934120.0 2391000.0 2170900.0 2619010.0 False True 1349833.3090324302 2758383.6922850357 3394299.0494464994 3549262.8489801576 3337175.1969606946 2517181.240490248 2792185.4061731203 2569428.5612519863 1635910.7835696451 2451862.5395527286 0.5505338440705033 1.125015635170242 1.384375753000285 1.447578235616593 1.3610776065649528 1.026640441657645 1.1388017725832515 1.04794967899004 0.6672114595249984 1.0 21.22544666782082 1.4752409970248215 3.752148305199653 0.833090075630473 1.168738746939031 0.1908067074533608 0.2500999792981482 0.3244993932376446 9.091754105155163 0.17978176211610847 0.06713890705277635 29.870397156998227 -1.4752409970248215 0.3356486713085579 HISEGCVFIYCQVGEKPYWK ddPTM_BT-474_Trastuzumab_2h_R1 1 HISEGCVFIYCQVGEKPYWK 20 1 Q9BRA2;I3L2R6 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 0 157.97 4.3287e-10 565150000.0 566900.0 711660.0 756910.0 758160.0 768780.0 917370.0 833400.0 814020.0 915450.0 872080.0 False True 563847.8733885104 735347.1728924447 863476.3488203412 854142.9782641045 866679.5760839422 853954.371156698 793085.2581028318 874766.3059098047 689849.6139015293 816423.1077747497 0.6906319382915794 0.9006937283986407 1.0576334018445903 1.046201375402228 1.061556891066168 1.0459703590265148 0.9714145160154423 1.0714619632632345 0.844965811638759 1.0 19.638957490957672 4.627086556113414 2.5941867237959313 1.0192562333546014 0.6611590406250425 0.698242407540913 0.06436983720641255 0.18927571386905537 1.9119468755125306 0.015269090821153249 0.13102330382227084 42372.74077002961 -4.627086556113414 -0.35809719272955887 HISESCPFPSPGGQLAEVHS(ph)VSPEQGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HISESCPFPSPGGQLAEVHSVSPEQGAK 28 0 Q5T1V6;Q5T1V6-2;Q5T1V5 Q5T1V6 DDX59 Probable ATP-dependent RNA helicase DDX59 1 HISESCPFPSPGGQLAEVHS(0.614)VS(0.386)PEQGAK;HISESCPFPSPGGQLAEVHS(0.558)VS(0.442)PEQGAK 161.68 1.5096e-11 207398000.0 72006.0 114004.0 115891.0 137226.0 126658.0 152837.0 153293.0 131973.0 138153.0 138929.0 True False 71618.3276966187 117798.55422312673 132207.44545737022 154598.79752990123 142787.1455392177 142271.73792959919 145877.63195387242 141821.49540531522 104107.04430535584 130062.43227689886 0.5506457663666131 0.9057077601957902 1.0164921810465968 1.188650672015461 1.0978354244154707 1.0938726536092074 1.1215969853870138 1.0904109120716863 0.8004390082734666 1.0 16.988844783190828 4.730421752513805 1.8386195164537649 1.0688962162675357 0.388749243698478 0.7014478200343144 0.09866021920845248 0.43092043604423663 1.509442802664763 0.025288201299152935 0.5037201211480663 53755.35725657998 -4.730421752513805 -0.6801469725690577 HISQIS(ph)VAEDDDESLLGHLMIVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HISQISVAEDDDESLLGHLMIVGK 24 0 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 1 HIS(0.001)QIS(0.999)VAEDDDESLLGHLMIVGK 215.86 2.3036999999999998e-32 33603000.0 10737.0 19645.0 15522.0 20516.0 18744.0 27942.0 29033.0 17471.0 24718.0 25399.0 True False 10679.19318499284 20298.871949346714 17707.362680357393 23113.32349644712 21130.93729560784 26010.435308392985 27628.56287316955 18774.774735940413 18626.5801042307 23778.01407482208 0.44912048379602737 0.8536823927125462 0.7446947682273962 0.9720460011385567 0.8886754473740025 1.0938859412962816 1.1619373588656723 0.7895854833318705 0.7833530607568232 1.0 14.537340606657935 5.030714410041852 1.0146163883799166 0.9491233832136219 1.1951859136969957e-12 0.5749498975493985 0.12539983122285334 2.4657581853859005 1.3784829133396599 0.039922405908794874 2.9168109247900236 107328.33942424433 -5.030714410041852 -0.9491233832124267 HISQISVAEDDDESLLGHLMIVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HISQISVAEDDDESLLGHLMIVGK 24 0 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 224.49 3.9313999999999995e-33 83723000.0 50977.0 85429.0 93375.0 97736.0 94438.0 110320.0 108340.0 90587.0 82300.0 109320.0 False True 50702.545496077146 88272.45262207901 106521.38836995057 110109.36757890227 106464.11952211977 102693.83806534641 103099.1803010088 97347.06193146549 62018.26776349972 102343.10400643936 0.49541731207299494 0.8625149049273019 1.0408262423157335 1.0758845810654156 1.0402666653086965 1.0034270414437008 1.0073876623335742 0.9511834028928855 0.6059838458641783 1.0 16.643054369657094 4.701519565302826 3.0069558109032357 0.9723731851715777 0.43790546799045577 0.5548415839582574 0.12591248395006419 0.24493062687302694 3.409016683143854 0.031046322835426726 0.29928167429664665 50294.39233534138 -4.701519565302826 -0.5344677171811218 HITDKDDFANNR ddPTM_BT-474_Trastuzumab_2h_R1 2 HITDKDDFANNR 12 1 Q9Y6W3 Q9Y6W3 CAPN7 Calpain-7 0 ; 200.21 9.7758e-08 307290000.0 199357.0 288900.0 242700.0 294560.0 291370.0 278390.0 260230.0 223391.0 299630.0 222668.0 False True 198283.68406264496 298515.861856262 276870.05041378277 331851.2657980829 328474.24241470604 259145.55455957024 247641.68072486136 240061.57077651328 225790.2013362995 208457.137604334 0.9511964250367911 1.4320251409326443 1.3281869529423413 1.591940048740185 1.5757399635707017 1.2431599010605543 1.1879741013948983 1.1516111826891082 1.0831492935725944 1.0 17.6693912455281 2.3073947737100564 2.440109492792335 1.112304929327635 1.3880865572168555 0.34972345247373404 0.17206156044227872 0.3414486399773166 4.172416791504728 0.07388984944990964 0.05465725953019085 202.95267212065974 -2.3073947737100564 0.27578162788922045 HITESVNSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 HITESVNSIR 10 0 Q01970;Q01970-2 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 0 111.86 0.0026359 0.0 85152.0 238340.0 202350.0 207180.0 200880.0 158560.0 172590.0 109250.0 120560.0 195100.0 False True 84693.55109327668 246273.0028204277 230839.12114227025 233408.96675735613 226460.87729095735 147599.12041009185 164241.16234217363 117402.78976025929 90849.60342123373 182648.55096648633 0.4636968136079922 1.3483435894633276 1.263843156273527 1.2779130495274702 1.2398722907607955 0.8081045243943622 0.8992196295732441 0.6427797490810709 0.4974011725825488 1.0 17.478710782630273 2.614498120751636 3.8104014956478665 0.7375396620111283 1.1478278288313672 0.2950979433633041 0.2667337147675187 0.27473341617197894 7.051954419734557 0.0887970998462977 0.08292279787371744 411.6215661591849 -2.614498120751636 0.41028816682023894 HITIFSPEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 HITIFSPEGR 10 0 G3V5Z7;P60900;G3V3I1;G3V295;G3V3U4;G3V4S5;G3V2S7 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 ;;;; 205.18 1.7347e-07 1881390000.0 1173170.0 1877050.0 1985560.0 1687390.0 1308160.0 1445260.0 1656450.0 1239610.0 2116400.0 1447530.0 False True 1166853.7830714395 1939526.4745493124 2265109.589203096 1901013.400988007 1474746.4219282086 1345352.5779760948 1576321.1852465002 1332115.9928120377 1594841.578307058 1355147.3961072185 0.8610530385280087 1.431229163794857 1.6714857702636812 1.4028093227709673 1.0882553633387402 0.9927721381753305 1.163210134760708 0.9830045031549036 1.176876834865626 1.0 20.37001834789072 3.2148206608801164 7.515948379780257 1.0631827645502083 1.371802423199158 0.3098862886039715 0.19849597817320547 0.19844460383079532 45.04519897149996 0.057881057385832636 0.07091055945338741 1639.9124420380674 -3.2148206608801164 0.3086196586489496 HITLDK ddPTM_BT-474_Trastuzumab_2h_R1 6 HITLDK 6 0 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 NANS Sialic acid synthase 0 ;;;;; 148.28 0.010785 2917050000.0 7220060.0 7590590.0 7022740.0 6721440.0 6269710.0 7998620.0 7649740.0 7018570.0 10801100.0 7683450.0 False True 7181187.999184078 7843238.199541454 8011480.749249657 7572373.614835237 7068120.405017355 7445694.226126203 7279692.851355354 7542331.332976325 8139313.632324871 7193085.642867508 0.9983459610695407 1.0903857661306482 1.1137752484837504 1.052729522599779 0.9826270332296035 1.0351182504700436 1.0120403416263677 1.0485529725973888 1.1315468821639318 1.0 22.778179350657492 4.7777331572132145 21.973860481517814 1.050706496217202 0.9983452796408137 0.10868979535293033 0.045869421469069034 10818.634816495902 6068110.913253424 0.011255947591124686 2.4980826000784653 59942.26608843306 -4.7777331572132145 -0.05236121657638826 HIVDCIR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIVDCIR 7 0 A0A087WVI0;E9PBL8;Q8WTW3 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 0 ; 100.75 0.0095609 251970000.0 160634.0 185238.0 168843.0 180702.0 157054.0 174702.0 174788.0 152810.0 201301.0 180066.0 False True 159769.1643921153 191403.53485126435 192614.62679033531 203578.85467220662 177053.89596801077 162625.26194427293 166332.83668499827 164213.4581534575 151693.06584520373 168574.03371774146 0.947768531538084 1.1354271510863194 1.1426114837641435 1.207652508411093 1.0503034901832384 0.9647112212819853 0.9867049688299218 0.9741325786177409 0.8998602127489989 1.0 17.363022802462478 2.9145849215452637 3.9353997830986494 0.966890412266081 1.114432996151739 0.5063922931145756 0.066509915527176 0.18898164535542622 5.405461920508706 0.020878377640419443 0.02270764664007488 821.4571641127302 -2.9145849215452637 0.147542583885658 HIVLSGGSTMYPGLPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIVLSGGSTMYPGLPSR 17 0 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ; 131.48 2.68e-05 1314540000.0 586750.0 697740.0 714960.0 692250.0 779070.0 761280.0 759590.0 723590.0 928030.0 771990.0 False True 583591.003194053 720963.8541072628 815620.1534562771 779888.7790220091 878279.9465903338 708654.5054603601 722845.7297844123 777587.9601155693 699329.4414648924 722720.9372661093 0.8074914854433946 0.9975687944429933 1.1285409227821526 1.079100851806166 1.2152407676366335 0.9805368419808629 1.0001726704068863 1.0759173008838094 0.9676341246045788 1.0 19.463079164296058 4.684940224213808 3.2673182709334525 1.0603837061732109 0.7863094082774494 0.5147146908213531 0.07206034571904069 0.21899820579570176 3.8373109757104484 0.017603520384118096 0.1395745834791717 48410.573124984796 -4.684940224213808 -0.27407429789576143 HIVNHAVVNEDPNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIVNHAVVNEDPNAR 15 0 Q9NQT8;E7ERX9 Q9NQT8 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein 0 ; 119.96 9.891e-05 1270960000.0 283340.0 298210.0 272290.0 254620.0 272320.0 282280.0 300500.0 110234.0 359520.0 225390.0 False True 281814.52892203367 308135.73957824835 310626.06521289266 286854.8658932232 306998.337832903 262766.64801564557 285963.6669785227 118460.22083690997 270921.1133211836 211005.4172339127 1.3355795913506079 1.4603214629160948 1.4721236510650542 1.3594668310113889 1.4549310717107142 1.245307591910554 1.3552432479091951 0.5614084339151796 1.2839533547181425 1.0 17.68692051278243 1.8651803767505926 9.187196220197128 0.9087261366411775 1.3882891420590049 0.5586168083048252 0.17623969463739766 0.20542053915485448 14.326952654932317 0.06993158987107942 0.04416649359487447 73.31289624320084 -1.8651803767505926 0.47956300541782737 HIWITAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HIWITAAK 8 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 101.33 0.008759399999999999 0.0 740070.0 503540.0 356300.0 370190.0 301770.0 402160.0 400500.0 322420.0 641340.0 387630.0 False True 736085.545349506 520300.02450364165 406463.9429848823 417056.0160435641 340198.620769077 374359.62578281126 381126.28494142543 346480.61761558574 483290.3505157103 362891.1215332603 2.028392268842105 1.4337634448186805 1.120071335081226 1.149259354380042 0.9374674677398978 1.031603154690297 1.050249681863583 0.9547784364402796 1.3317778304240353 1.0 18.469177234818055 4.814598008621546 1.3556633532759277 1.0468549384495267 2.58189898010938 0.8853433790069852 0.10637457510207242 0.4345691641418777 0.6237237359000126 0.027969667117507577 0.9598472206408512 65252.62820716615 -4.814598008621546 1.5350440416598534 up HIYLLPSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HIYLLPSGR 9 0 P17174;P17174-2 P17174 GOT1 Aspartate aminotransferase, cytoplasmic 0 ; 95.608 0.00793 1144030000.0 505890.0 665900.0 684210.0 670700.0 508180.0 507090.0 568810.0 451610.0 831120.0 529750.0 False True 503166.3444496623 688064.0789549502 780540.820740069 755610.5512315792 572893.7107811564 472036.06186146237 541294.4872347864 485311.4314291137 626301.6124374226 495940.9014582064 1.0145691613057344 1.3873912737018612 1.5738585352509915 1.5235899055913125 1.155165280977405 0.9517990157164754 1.091449577244441 0.9785670631362748 1.2628553333591137 1.0 18.919808687280778 3.066578275581026 5.706338874391436 1.0519828620258955 1.3880731668351982 0.4667904662905735 0.1603130492138101 0.17212662346103744 10.516588499651212 0.047775504238230584 0.057195724792861495 1165.677129104651 -3.066578275581026 0.3360903048093027 HIYYITGETK ddPTM_BT-474_Trastuzumab_2h_R1 6 HIYYITGETK 10 0 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ;;;;; 179.42 2.1084e-06 36431000000.0 23716190.0 22960910.0 20870520.0 20492010.0 19774840.0 24258610.0 25470080.0 22763800.0 31689000.0 23914090.0 False True 23588504.668156423 23725150.009186782 23808907.80618818 23086296.364906855 22293048.659340493 22581669.389325585 24237994.92524569 24462550.348234195 23879670.560844988 22387872.302317474 1.0536286945729392 1.0597322375619804 1.0634734504771857 1.0311965359261535 0.9957645084938614 1.0086563423442454 1.0826395022244566 1.0926697284092495 1.0666342133090105 1.0 24.416214088125333 2.221892147620411 24.979452701902225 1.071344604307001 1.0357964521147853 0.09645290939688833 0.031163772765744144 379.5361825064277 568770.5859048787 0.01211887960952066 0.0089757674257006 166.6833220983551 -2.221892147620411 -0.03554815219221563 HKDAAIYLVTSLASK ddPTM_BT-474_Trastuzumab_2h_R1 2 HKDAAIYLVTSLASK 15 1 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ; 137.46 9.9768e-06 1515090000.0 1289360.0 1328300.0 1281480.0 1182230.0 1157690.0 1567100.0 1538340.0 1396700.0 2107490.0 1556170.0 False True 1282418.2290213641 1372511.6625256955 1461901.2451761637 1331900.1967832276 1305114.959333774 1458770.0655566026 1463924.6171705183 1500928.846298892 1588127.3284191755 1456853.898295834 0.8802655026159334 0.9421065929337195 1.0034645525445167 0.9142304512080642 0.8958447795351628 1.0013152775738254 1.0048534165869036 1.030253512761036 1.090107477679745 1.0 20.474424772208522 2.430687084659872 2.226229897214899 1.0356615289814903 0.931928021002907 0.6140425249945632 0.03895680590141351 0.2193044144627939 2.216835322595699 0.016220193172854776 0.012982656809225836 269.5796372967588 -2.430687084659872 -0.10373350797858338 HKEEDKNSER ddPTM_BT-474_Trastuzumab_2h_R1 6 HKEEDKNSER 10 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ;;;;; 237.68 2.1098e-12 1492874000.0 800753.0 617237.0 544815.0 511185.0 523013.0 540916.0 711905.0 634320.0 1112855.0 679175.0 False True 796441.8348200225 637781.3604173543 621520.2163831288 575900.9685870213 589615.6054090773 503523.7500993021 677467.4354088017 681656.1794116945 838606.7967430071 635829.4700290287 1.2526028948983146 1.0030698331554786 0.977495139309528 0.9057475246636942 0.9273172024916656 0.7919163452368978 1.0654860577284535 1.0720738995953956 1.3189177857778764 1.0 19.2782803598643 1.6904180715889139 2.697848986322826 1.161161881284652 0.972817522390519 0.20268528794412688 0.13336658403746976 0.3323282371061002 5.391964372552842 0.08443100146723408 0.0364569942565323 49.02505297085303 -1.6904180715889139 -0.18834435889413303 HKELAPYDENWFYTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HKELAPYDENWFYTR 15 1 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 ; 188.44 1.7977e-07 1800160000.0 1190210.0 1600930.0 1564700.0 1673030.0 1778920.0 1747040.0 1841830.0 1553550.0 2291100.0 1725610.0 False True 1183802.0416047636 1654215.987267379 1784996.159383794 1884835.426460368 2005454.9175150818 1626271.2368898022 1752733.6464261306 1669483.7897670532 1726489.1041671254 1615480.0924309504 0.7327865240501948 1.023977946257536 1.1049323156299367 1.1667339234271192 1.2413987191246059 1.006679837473338 1.0849614641729464 1.033428884446876 1.0687158029716914 1.0 20.623531541698974 4.7330401870184025 2.841293455609407 1.0911147280515714 0.6707666969479329 0.7017544223802324 0.0692238107483515 0.23113869536911888 2.6334691271040165 0.017874654855072693 0.223463469095832 54080.43634372439 -4.7330401870184025 -0.4203480311036385 HKETNNSNAQNPS(ph)EEEGEGQDEDILPLTLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HKETNNSNAQNPSEEEGEGQDEDILPLTLEEK 32 1 O43422;O43422-2 O43422 PRKRIR 52 kDa repressor of the inhibitor of the protein kinase 1 HKETNNSNAQNPS(1)EEEGEGQDEDILPLTLEEK 98.812 2.4992e-05 229710000.0 133400.0 93413.0 79133.0 76630.0 88652.0 114980.0 117220.0 73880.0 183720.0 96290.0 True False 132681.7892221332 96522.19523564911 90274.2385636336 86331.35014294907 99941.30671842859 107031.70323380659 111549.62077611467 79393.30075503846 138444.66772187332 90144.68976198355 1.4718758206663516 1.0707474338256042 1.0014371207221646 0.9576975678866592 1.1086765840817896 1.1873323155963065 1.237450825674239 0.8807318652342931 1.5358050273113169 1.0 16.45995488751659 2.9658006839092774 22.605632318897626 1.1438987674171333 1.1027395605451966 0.001242931109719736 0.20561543949431332 1641.8406217167337 1085249.7539314374 0.062157765162212684 0.06598595050394666 924.2738882378786 -2.9658006839092774 -0.04115920687193664 HKFQSQADQDQQASGLQS(ph)PPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HKFQSQADQDQQASGLQSPPSR 22 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 HKFQSQADQDQQASGLQS(0.999)PPS(0.001)R;HKFQSQADQDQQASGLQS(0.932)PPS(0.068)R 131.04 7.679400000000001e-06 316650000.0 96937.0 102142.0 98410.0 110858.0 107166.0 119050.0 119780.0 95757.0 135678.0 133808.0 True False 96415.1019627132 105541.73472385715 112265.27260494605 124892.61143347314 120812.9548773534 110820.35371355597 113985.78379596492 102902.87358419364 102241.97489205496 125268.2588812076 0.7696690512330345 0.8425257576537629 0.8961988743805217 0.9970012559359456 0.9644338953566907 0.8846642773142346 0.9099334884510377 0.8214600769838819 0.8161842098325278 1.0 16.93466137787722 4.516771658132363 2.495518796916634 0.9044149453181146 0.7671727388494751 0.3532341462590365 0.06041452037563543 0.4460166589839907 4.666394902601055 0.016679625579076325 0.10487220642418903 32867.87738360741 -4.516771658132363 -0.1372422064686395 HKGEMENALR ddPTM_BT-474_Trastuzumab_2h_R1 1 HKGEMENALR 10 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A0A0MRE9;A0A087WX84;Q99996-4 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 0 138.22 4.2363e-05 71118000.0 72862.0 85178.0 91936.0 98322.0 82530.0 91272.0 82125.0 69664.0 91604.0 80880.0 False True 72469.71908772914 88013.09823881158 104879.7896779628 110769.55511881829 93039.70630636554 84962.58147117749 78152.30000203384 74862.68142662426 69029.42163071246 75718.16915514822 0.9570981429732812 1.1623775273603192 1.3851337248139448 1.4629190900251299 1.2287632855428015 1.1220897496489548 1.032147249121912 0.9887016849711322 0.9116625824545445 1.0 16.2083519070369 2.384881446693482 1.9226601626262974 0.9727523328893586 1.254689030713554 0.47244069617063167 0.12799931264147654 0.3154870247671123 2.3821116828979196 0.06238261583988287 0.04640685147847192 242.59477717044106 -2.384881446693482 0.2819366978241955 HKGFAFVEYEVPEAAQLALEQMNSVMLGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HKGFAFVEYEVPEAAQLALEQMNSVMLGGR 30 1 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-2;Q9UHX1;A0A0J9YYL3;A0A0J9YXJ8;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;H0YCP8;E9PN18;E9PMU7 A0A0J9YVP6;E9PN18 PUF60 Poly(U)-binding-splicing factor PUF60 0 84.035 0.00086058 55525000.0 199520.0 198780.0 184090.0 179450.0 181120.0 197210.0 216810.0 181920.0 277310.0 213890.0 False True 198445.80648875618 205396.27213495265 210008.27186103538 202168.35160057712 204184.5584176534 183577.33688240557 206322.07200536912 195495.79417104242 208970.66626362238 200239.35707955787 0.9910429666926612 1.0257537535607741 1.0487861873108002 1.009633443440656 1.0197024271134074 0.9167894841445567 1.0303772196161942 0.976310536661228 1.0436043608579677 1.0 17.61136603843615 2.939997341494808 24.999992361548834 0.9912039602142678 1.0205961410119797 0.11808023308586135 0.034542575827889645 470.44351001527315 196008.70888217393 0.010112903859729643 0.010726366688731604 870.9582584258966 -2.939997341494808 0.029392180797711887 HKGPPVFTQEER ddPTM_BT-474_Trastuzumab_2h_R1 1 HKGPPVFTQEER 12 1 Q99447-3;Q99447;Q99447-4;I3L1R7;I3L2Q1 Q99447-3 PCYT2 Ethanolamine-phosphate cytidylyltransferase 0 214.81 2.5788e-11 431830000.0 257130.0 241160.0 249530.0 224610.0 236620.0 320330.0 297570.0 289960.0 346610.0 273060.0 False True 255745.64064982836 249186.86481570132 284661.65504635865 253045.60297021817 266752.15444338083 298186.3410757112 283175.4022722095 311598.2875870463 261192.60983604685 255633.07702157254 1.0004403327987417 0.9747833407124884 1.1135556414021353 0.9898781719427646 1.0434962390288405 1.1664622769085067 1.1077416333267105 1.2189278915605704 1.021748096448431 1.0 17.96371499682323 2.8781220667518457 5.510259184254496 1.1248216584047592 1.0224846835972574 0.213750655224359 0.07019253581293149 0.26761210294101806 10.989928088195066 0.020924208166213893 0.022314943143526937 755.3044905744308 -2.8781220667518457 -0.10233697480750181 HKGYS(ph)PPESR ddPTM_BT-474_Trastuzumab_2h_R1 1 HKGYSPPESR 10 1 Q14669-3;G5E9G6;C9JLD7 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 HKGYS(0.999)PPES(0.001)R 76.07300000000002 0.022463 41182000.0 99907.0 125780.0 102780.0 115700.0 105270.0 137970.0 154150.0 111670.0 189340.0 133570.0 True False 99369.1118127112 129966.51126438427 117250.53062022493 130347.60813701175 118675.51051582572 128432.45864644552 146693.1755898145 120003.38244877031 142679.69402601526 125045.44824496956 0.7946639658409854 1.0393541955223682 0.9376633237423081 1.042401862414496 0.9490590195921018 1.0270862350370455 1.1731188751663801 0.9596781340947204 1.14102269237741 1.0 16.932093017650004 5.485305037122137 1.1517051321300886 1.0351027119104084 2.5143335174743057e-59 0.4610617993892332 0.07479324878543324 6.881019345968519 2.1756053813063883 0.020209556800488058 13.026312361782065 305706.7563881635 -5.485305037122137 -1.0351027119104084 HKHEIESGR ddPTM_BT-474_Trastuzumab_2h_R1 6 HKHEIESGR 9 1 O00178;F5H716 O00178 GTPBP1 GTP-binding protein 1 0 ;;;;; 121.6 0.00036606 152734000.0 242943.0 267107.0 233130.0 251948.0 241295.0 269072.0 266250.0 19779.9 286925.0 118619.8 False True 241635.02188150477 275997.49502540857 265952.6775977145 283844.59096718946 272022.4879824847 250471.68596735783 253370.47032622815 21255.976578297028 216216.1783480217 111049.38280847976 2.175924041813346 2.485358207721019 2.3949045989421407 2.5560213284275455 2.449563258281459 2.255498226400154 2.281601787586709 0.1914101280054473 1.9470272853377026 1.0 16.760841849117114 1.7648741709989024 24.999999999999996 0.9843318609708327 2.382229937825492 0.6875647789086785 0.4086606170547448 8.147868847204117 7746.113838252558 0.17292755274613938 0.09590503170013315 58.19345882816031 -1.7648741709989024 1.3978980768546594 HKLDVTSVEDYK ddPTM_BT-474_Trastuzumab_2h_R1 3 HKLDVTSVEDYK 12 1 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ;; 163.99 3.5149e-05 3069750000.0 7075830.0 5445480.0 5089320.0 4974620.0 4711580.0 6925140.0 6964580.0 6478360.0 10259450.0 6682340.0 False True 7037734.5174786225 5626729.5099378275 5805852.018837559 5604406.381940722 5311571.78527742 6446421.371826085 6627676.6581207225 6961808.119645518 7731146.017086727 6255867.340160897 1.1249814190109755 0.8994323574951497 0.9280650792521818 0.8958640068919014 0.8490544150734516 1.0304600499505296 1.0594336960397026 1.1128445891032057 1.2358232035156753 1.0 22.576778488983308 2.2900484698783288 2.1260470465270536 1.1205101444359966 0.9352038312210784 0.4267102683282781 0.08813535401982726 0.2764350495294408 2.553840034610191 0.03901488506618321 0.027373722453958912 195.0062226296066 -2.2900484698783288 -0.1853063132149182 HKMS(ph)PPPSGFGER ddPTM_BT-474_Trastuzumab_2h_R1 9 HKMSPPPSGFGER 13 1 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 HKMS(1)PPPSGFGER;HKMS(0.999)PPPS(0.001)GFGER;HKMS(1)PPPSGFGER;HKMS(0.998)PPPS(0.002)GFGER;HKMS(1)PPPSGFGER;HKMS(0.997)PPPS(0.003)GFGER;HKMS(0.998)PPPS(0.002)GFGER;HKMS(1)PPPSGFGER;HKMS(1)PPPSGFGER 147.09 2.422e-05 15271810000.0 1915694.0 1788367.0 1630870.0 1755289.0 1758190.0 1929718.0 2017881.0 1650504.0 2446448.0 1898284.0 True False 1905380.1163576124 1847891.7145043176 1860482.3202238434 1977508.4074261659 1982085.0748914182 1796321.1367275603 1920268.3869760006 1773672.98956949 1843553.6711236767 1777133.8899173047 1.0721646394612818 1.039815697054939 1.0469004787874576 1.1127515032185815 1.115326811410732 1.010796736767621 1.0805423259726121 0.9980525382091635 1.0373746635429155 1.0 20.76112094795755 1.7419649663387597 10.551269221875232 1.0138958685868193 1.0677084661703002 0.4023870039778019 0.031514430357333215 0.09789094218956529 57.893533015875256 0.015302331930799535 0.00832604451531345 55.20329061017707 -1.7419649663387597 0.05381259758348089 HKS(ph)DS(ph)PES(ph)DAER ddPTM_BT-474_Trastuzumab_2h_R1 2 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 3 HKS(1)DS(1)PES(1)DAER;HKS(1)DS(1)PES(1)DAER 150.69 0.00011496 537100000.0 1770810.0 1512530.0 1062660.0 1073420.0 1146690.0 1765750.0 1283790.0 1194400.0 1991180.0 1068290.0 True False 1761276.1557154863 1562873.646706306 1212273.2911936997 1209314.861939767 1292714.174535882 1643687.8586284032 1221688.1731459484 1283532.1930403067 1500480.3694450252 1000110.8175909176 1.7610809969619923 1.5627004720046727 1.212138964873755 1.209180863429498 1.292570934938782 1.6435057292828248 1.2215528036070742 1.2833899708555287 1.5003141082499294 1.0 19.931728436455153 7.99999999999952 0.03322718653827163 3.2093395974343454e-15 3.426287036708261 0.33874283631719126 0.18275017364497964 1479.4181052765355 3.7603324348886606 117.64156656094657 314.0389043851352 99999999.99988957 -7.99999999999952 3.426287036708258 HKS(ph)ESPCESPYPNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HKSESPCESPYPNEK 15 1 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H0Y594;B7ZBA0;B7ZB98 Q8NI27 THOC2 THO complex subunit 2 1 HKS(0.541)ES(0.454)PCES(0.005)PYPNEK;HKS(0.498)ES(0.498)PCES(0.004)PYPNEK 165.33 8.639e-07 559260000.0 570090.0 582480.0 571730.0 523390.0 558680.0 819130.0 707790.0 719050.0 934850.0 725340.0 True False 567020.6987829537 601867.4946834048 652224.6144337553 589651.1203356137 629824.5864442054 762505.4711246127 673551.4936796294 772709.1622619159 704468.7438482104 679048.1802051829 0.8350227794022234 0.8863398978575321 0.9604982878191022 0.8683494596177893 0.9275108965815887 1.122903342284508 0.9919053070374291 1.1379298034911633 1.0374355817216776 1.0 19.37315441544157 2.8640606207154247 5.023023715437802 1.066340895264291 0.8933724583094956 0.7043445326070378 0.05285569627928668 0.11778767432072193 4.3365921101594 0.01567190856260063 0.016713748016104632 731.2411461842983 -2.8640606207154247 -0.17296843695479536 HKSDFGK ddPTM_BT-474_Trastuzumab_2h_R1 3 HKSDFGK 7 1 P27797;K7EJB9 P27797 CALR Calreticulin 0 ;; 136.8 0.0017696 7117602000.0 9419199.0 18225460.0 20550900.0 20499060.0 21396770.0 19686140.0 26488200.0 22657380.0 24184070.0 21978360.0 False True 9368487.079155397 18832083.41857678 23444288.08837503 23094238.894184034 24121521.83090818 18325283.47798894 25206864.57124957 24348188.747444417 18224229.998435244 20575682.248179305 0.45531841744807233 0.9152592459111867 1.139417289088898 1.1224045266458949 1.172331567913994 0.8906282307897957 1.2250803772730339 1.1833478206827837 0.8857169244071051 1.0 24.294436932513186 4.695590540130079 2.4901930490217787 1.0942595857740522 0.3477630679883887 0.7287523494191507 0.11377937057768456 0.22032183749107476 1.8365679477401542 0.027770333677653133 0.33476736966034437 49612.43468102215 -4.695590540130079 -0.7464965177856635 down HKSDS(ph)PES(ph)DAER ddPTM_BT-474_Trastuzumab_2h_R1 2 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 HKS(0.004)DS(0.996)PES(1)DAER;HKS(0.002)DS(0.998)PES(1)DAER 140.46 3.3966999999999995e-05 780250000.0 1786960.0 1813810.0 970720.0 1610610.0 1511700.0 1657250.0 1588250.0 1057140.0 1956080.0 1144230.0 True False 1777339.2059099188 1874181.569378701 1107388.9383505052 1814513.0608604366 1704206.0344521122 1542688.2082468788 1511420.2797958008 1136029.1548481514 1474030.2941291188 1071204.2617754107 1.6591972878862171 1.7496024206181164 1.0337794367202406 1.6939001510814269 1.5909253680783217 1.4401438299825582 1.4109543191050953 1.0605159028823317 1.3760496916676428 1.0 20.030802174858202 1.9808008043536989 2.5878498209361416 1.1554092199283719 1.5278935019303481 0.3984190076611812 0.2086803818583418 0.298505285847728 3.732589399026066 0.10780623524668585 0.05941455811529106 95.67551406159424 -1.9808008043536989 0.37248428200197625 HKSDSPES(ph)DAER ddPTM_BT-474_Trastuzumab_2h_R1 3 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 HKSDS(0.001)PES(0.999)DAER;HKSDSPES(1)DAER;HKSDS(0.002)PES(0.998)DAER 124.99 0.0001897 677073000.0 719974.0 938082.0 790348.0 969304.0 945711.0 1053546.0 1013658.0 763262.0 1083561.0 940833.0 True False 716097.7399806312 969305.4922874551 901622.1285720331 1092017.787015023 1066141.6901817415 980716.8448005213 964623.4899904005 820220.4862059035 816531.9105235193 880788.2324523439 0.8130191953028578 1.1004977775289482 1.0236536948974468 1.2398187745703197 1.210440433807029 1.1134536187772968 1.0951820817413027 0.9312346100744284 0.9270467979006505 1.0 19.74843566870688 1.7497375722095265 6.520804415839414 0.9479441275803682 1.095457419157552 0.22612051213970663 0.11084218008319316 0.20855432394931595 25.046759421487472 0.055894047041185876 0.029674182633941087 56.200162616149356 -1.7497375722095265 0.14751329157718374 HKSEEHNDKEHSSDK ddPTM_BT-474_Trastuzumab_2h_R1 3 HKSEEHNDKEHSSDK 15 2 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 0 ;; 116.96 0.0001311 76435700.0 79654.2 140677.0 117364.0 114686.8 114695.0 90299.0 102742.0 10911.3 94765.0 65823.0 False True 79225.35063761358 145359.3489039577 133887.83105382466 129206.13712089763 129300.72839947417 84056.84267098199 97771.97694744544 11725.556612458731 71411.43553594226 61622.11978609455 1.2856641561930058 2.3588826448771245 2.1727235531426388 2.096749309653802 2.098284331151032 1.364069314115838 1.5866376763220071 0.19028161726926965 1.158860418691029 1.0 15.911160691142634 2.2296502633493773 1.6698371150895044 0.7353286121543952 2.024248937959812 0.5956786851994602 0.4045709729881718 0.2193485323937902 1.2128633071932466 0.20990176353868906 0.12830615716874744 169.68766100810655 -2.2296502633493773 1.288920325805417 HKSEFFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HKSEFFEK 8 1 Q9H993 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 ; 130.96 0.00061609 854980000.0 901440.0 1452250.0 1669500.0 1608780.0 1591210.0 1942240.0 2020820.0 1760690.0 2181880.0 2130090.0 False True 896586.7471993987 1500587.263346335 1904551.0884458637 1812451.3830480725 1793841.1616594172 1807977.5203411756 1923065.2163179286 1892081.6284026632 1644184.9096941038 1994145.8325382026 0.4496094180124223 0.7524962512076396 0.9550711173523853 0.9088860771737719 0.8995536496827655 0.9066425789130642 0.9643553570353475 0.9488180841791147 0.8245058525139762 1.0 20.927339487679372 4.648616851706616 2.2418886832186025 0.9257024415437349 0.3772798915613668 0.908148559068771 0.04643746132521894 0.1254641012254304 0.8482258891462047 0.011269341668911914 0.12591167435599301 44526.32497786489 -4.648616851706616 -0.5484225499823681 down HKSES(ph)PCESPYPNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HKSESPCESPYPNEK 15 1 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H0Y594;B7ZBA0;B7ZB98 Q8NI27 THOC2 THO complex subunit 2 1 HKS(0.116)ES(0.882)PCES(0.002)PYPNEK;HKS(0.119)ES(0.879)PCES(0.002)PYPNEK 177.84 4.4467e-07 612210000.0 436590.0 408450.0 404250.0 386890.0 414060.0 613920.0 532460.0 525870.0 716100.0 571410.0 True False 434239.4479497093 422045.0113367607 461164.8861960102 435870.23433127435 466788.08667410305 571481.1554122329 506702.8756052713 565113.0897137533 539626.7502483857 534942.1245912869 0.8117503333308858 0.7889545278551708 0.8620837002663702 0.8147988619596809 0.8725954925137822 1.068304642953409 0.9472106463711542 1.0564004286361222 1.0087572569849086 1.0 19.029023289162325 2.8908839386195586 4.192324858638889 1.0163947546242806 0.8221462733438241 0.8748569715050534 0.035566440693463604 0.07222725913025749 2.158118009215166 0.01059032517948903 0.011398400996693071 777.8286553951558 -2.8908839386195586 -0.19424848128045658 HKSETDTSLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 HKSETDTSLIR 11 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ; 213.16 2.0862e-09 1055930000.0 1678250.0 3527900.0 3607810.0 3681850.0 3395270.0 3358420.0 3508660.0 2891560.0 2264540.0 3563340.0 False True 1669214.4884711036 3645324.0188394184 4115758.2883533193 4147971.8324914174 3827637.509158051 3126260.330270312 3338932.7114171837 3107342.8902441687 1706474.4602813597 3335924.5904711406 0.5003753661695801 1.0927477285464 1.2337683831672108 1.243424939622388 1.147399290766781 0.9371495804192572 1.0009017352954068 0.931478756780084 0.5115446749473286 1.0 21.669655245941595 1.4921118690834239 4.285878186892575 0.743857648689772 1.0400597778576064 0.16863378994600942 0.22794724151522824 0.28005373459218597 10.86834392591113 0.1468114703478184 0.058562028058916436 31.053593886890113 -1.4921118690834239 0.2962021291678344 HKVSEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 HKVSEFK 7 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 119.27 0.0028952 415570000.0 1042500.0 985430.0 885280.0 879920.0 960750.0 1068300.0 1068000.0 993400.0 1643200.0 1193600.0 False True 1036887.2958326389 1018229.4418449848 1009919.729008299 991317.7817797705 1083095.8176886071 994450.9355077031 1016336.7598437999 1067532.5523829898 1238255.3777519162 1117423.4261076292 0.9279269358478321 0.9112297255050654 0.9037932312965706 0.8871460528019105 0.9692796771420866 0.8899499619152592 0.9095359342734124 0.9553518634396037 1.1081344357216372 1.0 20.091744540276487 1.4209242465158742 4.4851802290917435 1.0526916809126696 0.9150125129373511 0.7366085365692545 0.032895740545987755 0.09307878908397356 3.2319434624745207 0.02145554060532035 0.0077810993817604155 26.35871573694635 -1.4209242465158742 -0.13767916797531854 HKYENK ddPTM_BT-474_Trastuzumab_2h_R1 1 HKYENK 6 1 Q9UDW1 Q9UDW1 UQCR10 Cytochrome b-c1 complex subunit 9 0 83.801 0.033993 1157500000.0 134810.0 118040.0 126770.0 83838.0 126690.0 165850.0 128490.0 94281.0 198880.0 168790.0 False True 134084.19793879904 121968.89004331324 144618.11409540693 94451.8822038963 142823.22054953905 154385.1798689061 122274.44782053359 101316.72696921739 149868.68885546565 158017.6776916105 0.8485392261015229 0.7718686404273667 0.9152021230032608 0.597729846329155 0.9038433081409717 0.9770120794345957 0.7738023340601556 0.6411733702791692 0.9484298911666799 1.0 17.269726438481012 5.0736405701288145 16.69602747221077 0.8156948484477056 1.4058270972115074 0.0 0.1330128888253603 88176105.02093217 308532308.941972 0.03140486983459243 1859934694.485581 118478.77907542844 -5.0736405701288145 0.5901322487638019 HLAAVEER ddPTM_BT-474_Trastuzumab_2h_R1 4 HLAAVEER 8 0 Q92922;F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 Q92922;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 0 ;;; 112.84 0.0029633000000000003 2778340000.0 1196880.0 1642730.0 1588870.0 1716500.0 1479120.0 1479160.0 1519540.0 1261340.0 1546770.0 1371050.0 False True 1190436.1310658678 1697407.2749987436 1812569.0852943878 1933808.724003289 1667477.1645689001 1376909.1507681098 1446034.0449934923 1355467.5957547405 1165589.2591561195 1283548.4151850382 0.9274571313262483 1.3224333846059424 1.4121548231845116 1.5066114383573979 1.2991151286868396 1.0727364347760988 1.1265909629010993 1.0560315292503668 0.9080991767560918 1.0 20.291706284427228 2.71350159806018 4.022065698650327 1.041666070494724 1.3153441968160238 0.42989693592086853 0.14949878354808932 0.2224542130269745 8.28883020796279 0.051078039795003465 0.04998033464658126 517.0131604027372 -2.71350159806018 0.27367812632129973 HLAEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLAEELR 7 0 Q9Y2K3;H3BUF4;H3BQA6;H3BR23;O95273-2;O95273 Q9Y2K3 MYH15;CCNDBP1 Myosin-15;Cyclin-D1-binding protein 1 0 80.229 0.046478 0.0 20239.0 30292.0 24681.0 23858.0 21940.0 29581.0 21346.0 16800.0 30755.0 22439.0 False True 20130.035472764295 31300.250908099304 28155.870268902254 26878.42035378416 24733.92895143171 27536.135096183967 20313.41243036122 18053.701308671443 23175.842345886198 21006.923809005573 0.9582571753858906 1.489996878775798 1.3403138186673462 1.2795029199973345 1.1774179397379632 1.3108123467548995 0.9669865333473029 0.8594167081679948 1.1032477937560197 1.0 14.358577293087265 2.232981424431431 24.350847050330692 0.9586419032036865 1.270733413757221 0.48343491818088646 0.13909958571647346 73.55068100245968 321013.56129602395 0.04952865240459225 0.037631831820676545 170.99421761747365 -2.232981424431431 0.31209151055353457 HLAEVLER ddPTM_BT-474_Trastuzumab_2h_R1 2 HLAEVLER 8 0 Q5VTR2 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 0 ; 149.94 0.00049721 509350000.0 122313.0 142081.0 141806.0 139823.0 140655.0 140138.0 143491.0 115878.0 165690.0 127286.0 False True 121654.48039825173 146810.08019522185 161771.0522001523 157524.57746362468 158566.5805224988 130450.58990936843 136549.79214114865 124525.40477656126 124857.91963225124 119162.49850497265 1.0209124676349002 1.2320157938707157 1.3575668035644755 1.3219308040696307 1.3306751915400785 1.094728555930075 1.1459124628496307 1.0450049834375101 1.0477954154934148 1.0 16.862570752742 2.6363438166078144 5.480407689769757 1.07120979176324 1.2607276685950848 0.4936630747987707 0.09407508665216936 0.20842660046058115 9.162238912946764 0.032310072203986 0.030391432414469902 432.85637353220403 -2.6363438166078144 0.18951787683184484 HLAEYTHVEAECPFLTFDDLLNR ddPTM_BT-474_Trastuzumab_2h_R1 6 HLAEYTHVEAECPFLTFDDLLNR 23 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;;;; 234.11 2.6832e-37 2669937000.0 1032026.0 1247048.0 1092296.0 1076797.0 1172904.0 1151820.0 1168402.0 633485.0 1244442.0 953409.0 False True 1026469.6866848681 1288555.2388235638 1246081.78239297 1213119.3897935175 1322266.3720533312 1072197.3944926343 1111881.9315309152 680758.8674716509 937765.9437684705 892561.6213654893 1.1500266896021352 1.4436596958451584 1.3960736744278186 1.3591435714406155 1.481428665989981 1.2012586793193376 1.2457200768165426 0.7627023739046599 1.0506456039795047 1.0 19.76759224892256 1.9156143700835015 4.432024922498709 0.921568974049381 1.3457721906394913 0.6959448025355317 0.11821931134746327 0.11362906096714005 3.8271793751524505 0.05393096674557763 0.03145256983819255 82.34066499186275 -1.9156143700835015 0.4242032165901103 HLAGEVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLAGEVAK 8 0 Q13200;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ; 99.139 0.0070255 169480000.0 356910.0 350910.0 339750.0 319780.0 302850.0 390110.0 401700.0 318710.0 508660.0 383000.0 False True 354988.43621642876 362589.8272204252 387583.84684006084 360264.1152122183 341416.1523674154 363142.61392016284 382268.2363569804 342493.75857658754 383307.5586947967 358556.6120972034 0.9900485006819305 1.0112484751002957 1.0809557926517563 1.0047621576549035 0.9521959457684153 1.012790175019046 1.0661307683634318 0.9552013462346602 1.0690293966490385 1.0 18.45184139683357 -0.1665538026996196 6.922793166425731 0.9999923244627495 1.0132288815903732 0.00897442705728313 0.04266683222279243 0.0 0.0 0.04007275781165825 0.009445239604206998 0.681469145491528 0.1665538026996196 0.013236557127623616 HLAGLGLTEAIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLAGLGLTEAIDK 13 0 P50454;E9PKH2 P50454 SERPINH1 Serpin H1 0 ; 226.73 1.0279000000000002e-11 1546410000.0 3224600.0 3296800.0 2955500.0 2821900.0 2883300.0 3350400.0 3562300.0 3336200.0 4795100.0 3292100.0 False True 3207239.11188674 3406531.9950423185 3371608.7103334772 3179152.250664075 3250471.1643419834 3118794.7339932676 3389977.939692482 3585164.1848803363 3613411.8560480853 3081995.3594913897 1.0406372293876585 1.1053008190137203 1.0939694311836605 1.031524022537373 1.0546645225573592 1.011940113533445 1.099929605426764 1.163260734264046 1.172426118332765 1.0 21.555433258936834 2.0052920263912353 24.52874809096496 1.1304255712945415 1.0588098619999733 0.17608753595852622 0.05151635341050451 134.6489069804141 624099.7479437322 0.018610271094522034 0.013696933147425728 101.22598848214075 -2.0052920263912353 -0.07161570929456818 HLAGYEQQDAHEFLIAALDVLHR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLAGYEQQDAHEFLIAALDVLHR 23 0 Q9UPT9-2;Q9UPT9 Q9UPT9-2 USP22 Ubiquitin carboxyl-terminal hydrolase 22 0 ;; 282.86 1.5718e-52 469378000.0 110052.3 129373.6 133160.7 141738.4 137695.6 143589.2 127424.9 81767.0 147326.9 114964.5 False True 109459.7906447601 133679.72206800745 151908.5691064467 159682.46690723463 155230.31847423688 133663.21657661928 121260.87077661078 87868.86874441306 111020.15957431769 107627.36718393964 1.0170256274845855 1.2420606911209047 1.4114306898061404 1.4836604395825335 1.442294116597146 1.241907333366088 1.1266732054252606 0.8164175250542134 1.031523510043497 1.0 16.715685443412927 2.1030961842513167 2.696206349442256 0.9341093527739668 1.3266396326627992 0.5805125396889119 0.13559193785415677 0.1891967677848389 2.7206385414400667 0.06706663610675409 0.04243505990586166 126.79326468799096 -2.1030961842513167 0.3925302798888324 HLAGYESSSTLMTSELESTSLGDS(ph)DEEDTMSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLAGYESSSTLMTSELESTSLGDSDEEDTMSR 32 0 I3L0M7;I3L2W9;I3L2N2;O14641 I3L0M7 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 HLAGYESSSTLMTSELESTS(0.001)LGDS(0.999)DEEDTMSR;HLAGYESSSTLMTSELESTS(0.001)LGDS(0.999)DEEDTMSR 193.14 1.729e-20 113983000.0 20366.8 24719.0 27273.0 24359.0 24050.0 28574.0 28329.0 18048.0 28296.0 23574.0 True False 20257.14741176421 25541.75697204896 31112.80133883439 27442.84690241546 27112.6249444819 26598.746635960935 26958.61804271071 19394.833405887035 21322.829946974347 22069.487137283188 0.9178802971611745 1.157333508167477 1.4097654895783165 1.2434746096140477 1.2285117808052306 1.2052272203021077 1.2215335080065384 0.8788076172881374 0.9661678957166399 1.0 14.429765483426365 1.7552639709616973 9.782536264697296 0.9442634233270957 1.2075762711428115 0.48597790977905064 0.11714223876647002 0.1127906627108209 45.63731808059307 0.05711880979096167 0.03113331455159222 56.9198793629854 -1.7552639709616973 0.26331284781571584 HLAQVGDSMDR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLAQVGDSMDR 11 0 P55957;P55957-2 P55957 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 0 ;; 132.86 0.00017367 1210390000.0 382209.0 517108.0 452382.0 490490.0 463483.0 483660.0 455592.0 408526.0 506630.0 447776.0 False True 380151.2292114122 534319.627181613 516073.4534251671 552585.9837089279 522504.81277103163 450225.7226131755 433553.2744295474 439012.284572995 381777.82499419025 419198.5523196791 0.9068524380816811 1.2746218330786196 1.231095504909119 1.318196307337264 1.2464375410642439 1.0740154519184388 1.034243253060954 1.0472657458945756 0.9107326895133169 1.0 18.677274209048754 2.535005332135257 3.1158415420369705 1.0090282669006252 1.2081175025250093 0.4130644544292771 0.1103452544777814 0.2570776350208043 4.95440595136263 0.039186257475743724 0.03499368018205238 342.7719949706779 -2.535005332135257 0.19908923562438408 HLCEPGADGAETFADGVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLCEPGADGAETFADGVPR 19 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38;K7EMY3 Q14839-2 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4 0 ;;; 341.69 7.025699999999996e-76 2573210000.0 993040.0 1256790.0 1113910.0 1190980.0 1061144.0 1213030.0 1228940.0 1096022.0 1391110.0 1194200.0 False True 987693.5829771152 1298621.495404403 1270738.8457207133 1341757.9458860706 1196274.3985067473 1129176.0912654751 1169491.4771932957 1177812.7271269474 1048289.580418981 1117985.1335939427 0.8834586018170166 1.1615731340091935 1.1366330441583952 1.2001572342673057 1.0700271073025194 1.0100099342426472 1.0460706873925751 1.0535137648393222 0.9376596780398017 1.0 20.092469573397143 2.99516016747194 24.60775508789189 1.021234474211243 1.1071160301993885 0.17907853404488816 0.08469744448925372 294.20855105092795 1495897.7620423045 0.0245000309683953 0.028567575677386495 988.9177395165361 -2.99516016747194 0.08588155598814562 HLCEPGADGSETFADGVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLCEPGADGSETFADGVPR 19 0 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 0 ; 221.24 2.7126999999999996e-19 913110000.0 443120.0 689750.0 587410.0 730490.0 656550.0 533190.0 556140.0 469596.0 582440.0 548750.0 False True 440734.2911552605 712707.9117873195 670112.2221407506 822969.9591011719 740157.7508232669 496331.8302942544 529237.3835388873 504639.63808017125 438905.4662961455 513728.305191489 0.8579131940004349 1.3873245927565974 1.3044097733547513 1.6019556461745184 1.4407571927487581 0.9661368183893426 1.030189261893244 0.9823084166874356 0.8543532872547217 1.0 18.97064603933133 2.728716908986272 24.128538294104224 0.9722232032656629 1.337265066782367 0.4807130165197402 0.18229072377074973 373.0313542324111 914358.7014411795 0.05959289771184296 0.05685818314297039 535.447517009358 -2.728716908986272 0.365041863516704 HLCICSVDPPGCTDIDDALHCR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLCICSVDPPGCTDIDDALHCR 22 0 Q9Y2L1;G3V1J5;Q9Y2L1-2;F2Z2C0 Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 0 ;;; 147.53 4.4754e-08 904660000.0 303627.0 409268.0 351551.0 408587.0 395400.0 429271.0 400229.0 325325.0 490341.0 389453.0 False True 301992.3059681312 422890.23797226965 401046.32506392983 460314.07230663113 445751.84628058795 399596.50616524054 380868.3942467457 349602.40346687724 369503.030782773 364597.7761125115 0.8282889412768637 1.1598815617618292 1.0999692026101953 1.2625257268837056 1.2225852034353415 1.0959927140146042 1.0446262133239486 0.9588714643146731 1.0134538798414057 1.0 18.475946236029888 2.133456368579069 2.844400375420656 0.988642476684687 1.126407819079375 0.1916489629779815 0.10992996274703046 0.40039487430938375 6.470679329360715 0.04963659562225732 0.032869537763728814 135.97415499065886 -2.133456368579069 0.13776534239468796 HLDGEEDGSS(ph)DQSQASGTTGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 HLDGEEDGS(0.011)S(0.989)DQSQASGTTGGR;HLDGEEDGS(0.011)S(0.989)DQSQASGTTGGR 318.03 1.1934e-67 1959690000.0 508750.0 624640.0 463930.0 533180.0 486630.0 523580.0 552730.0 288880.0 431350.0 386190.0 True False 506010.94652743865 645430.7647971469 529247.3114481521 600680.5333318231 548599.4460180129 487386.14697474724 525992.3382663521 310437.69250291697 325049.5722938718 361543.0235661063 1.3995870852004344 1.7852115038229557 1.4638570708069047 1.6614358297028284 1.5173835761145709 1.3480723322147887 1.454854067098814 0.8586466126241129 0.8990619403680408 1.0 18.463807812324582 1.801795292376346 3.768163750343539 0.9043309870006013 1.5346034133842326 0.8317360580598954 0.12352809226521318 0.08225107929433602 2.1097650369103222 0.06400879284005545 0.033528698336450787 63.3571002911867 -1.801795292376346 0.6302724263836312 HLDGEEDGSSDQSQASGTTGGR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 0 ;; 420.18 2.143999999999999e-174 1179390000.0 436826.0 482060.0 450053.0 465809.0 455720.0 480265.0 520210.0 374951.0 428784.0 474416.0 False True 434474.1773519312 498105.07568857615 513416.55046919733 524780.3716395268 513753.24073593755 447065.410972205 495045.45490481646 402931.74758259876 323115.92861123336 444138.36471202824 0.9782405931845967 1.1215087802908876 1.155983340466631 1.1815695588013106 1.1567414156375488 1.006590392753111 1.1146198892901213 0.9072212166221058 0.7275118618062555 1.0 18.760649671252335 1.6556779853086678 3.8988707436144208 0.8505264503045937 1.107007978173371 0.5828230438902913 0.0868704304568037 0.11305300493145075 4.030288431849658 0.04889599798719509 0.02233552708451233 45.25618961078634 -1.6556779853086678 0.2564815278687773 HLDHVAALFPGDVDR ddPTM_BT-474_Trastuzumab_2h_R1 8 HLDHVAALFPGDVDR 15 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;;;;;;; 122.34 6.3321e-05 5767350000.0 3483220.0 4337800.0 3867050.0 4073780.0 3924320.0 3575890.0 3793500.0 1560926.0 4500390.0 2947050.0 False True 3464466.7305421256 4482181.050744524 4411497.0269988505 4589520.130305923 4424058.890733027 3328697.1410396276 3609993.9124227096 1677410.224341623 3391329.186636415 2758966.745903558 1.2557116665817287 1.6245868339658496 1.5989670892369132 1.6634923697867408 1.60352019367459 1.2065013635927255 1.3084586531471372 0.6079849374162258 1.229202632352047 1.0 21.395696637175508 2.2934757043704908 1.7467214602264238 0.9245166341256016 1.5571695917739146 0.5964508102620044 0.20115559753773327 0.2140504829019751 1.3181174470569577 0.09791357776319029 0.06477081511451117 196.55120213485375 -2.2934757043704908 0.632652957648313 HLDLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLDLEK 6 0 P55263-3;P55263-2;P55263;P55263-4;A0A5K1VW54;A0A5K1VW94;A0A5F9ZHJ1;A0A5F9ZH72;A0A5F9ZH31;A0A5F9ZGZ8 P55263-3 ADK Adenosine kinase 0 122.98 0.018986000000000003 396250000.0 530040.0 540460.0 421490.0 437830.0 432480.0 561780.0 622790.0 540530.0 813400.0 628430.0 False True 527186.3235329805 558448.8843850313 480832.1283432441 493259.23310827895 487553.7644902086 522945.470887875 592663.268411161 580867.093355724 612948.4690015884 588323.0593740087 0.8960830535759056 0.9492214787216324 0.8172926773512196 0.8384156038913719 0.8287177541689063 0.8888746795753728 1.0073772546698585 0.9873267486298803 1.0418569512705855 1.0 19.16624905835513 2.2830426650110303 4.34173233260471 1.0067827877183886 0.8658081298318852 0.7687674438314761 0.037570542706303264 0.10604994895063585 4.277422852969134 0.014875484717426854 0.011868606003197436 191.88572395978235 -2.2830426650110303 -0.14097465788650343 HLDQIIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLDQIIPR 8 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ; 133.23 0.00092812 781570000.0 199306.0 256520.0 224660.0 247870.0 253840.0 254070.0 236360.0 215450.0 291070.0 248280.0 False True 198232.95864097818 265058.1131303853 256290.17522027416 279250.31658531615 286165.0193724443 236506.73891644852 224926.36381711706 231527.97303293247 219339.69863817596 232434.55783679782 0.8528549303764287 1.1403558730560792 1.1026336944277726 1.2014147947027294 1.2311638253609987 1.0175196886278415 0.9676976001780571 0.9960996126724757 0.9436621674483693 1.0 17.82646505571505 2.495435196152251 22.439414258652796 0.9801057718655063 1.1139178960125857 0.2876354580351478 0.09618532601270206 248.18420632625433 304091.8914661751 0.03181862192832652 0.02941150561042932 312.9213506832822 -2.495435196152251 0.13381212414707944 HLDRS(ph)PESDRPR ddPTM_BT-474_Trastuzumab_2h_R1 8 HLDRSPESDRPR 12 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(0.999)PES(0.001)DRPR;HLDRS(0.999)PES(0.001)DRPR;HLDRS(0.999)PES(0.001)DRPR;HLDRS(1)PESDRPR;HLDRS(1)PESDRPR 164.63 2.9631e-05 30275942000.0 4766580.0 5692920.0 5640500.0 5589080.0 5245070.0 5188660.0 5711370.0 4586660.0 5949290.0 5222790.0 True False 4740917.262896825 5882405.400757194 6434633.371895109 6296656.954938722 5912998.57453445 4829980.146991852 5435089.213547831 4928939.859787559 4483167.195901718 4889467.070744519 0.9696184050943869 1.2030770052535562 1.3160193695537676 1.2878002579491612 1.2093339599143833 0.9878336589873773 1.11159133191999 1.0080730248249794 0.9169030348371006 1.0 22.221245795995898 2.7434742537322268 24.17440696394627 1.0144873690170777 1.209135771429667 0.4901444196693209 0.0974324665266251 235.76259824242027 1159919.169609356 0.03140086504313632 0.0323414772318187 553.9547028837981 -2.7434742537322268 0.1946484024125894 HLDSSSNERPDISSIQR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLDSSSNERPDISSIQR 17 1 P49902-2;P49902;Q5JUV6 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 0 ;;; 274.52 6.495e-36 2868950000.0 493813.0 448413.0 454536.2 384705.5 377146.0 539756.0 548869.0 495922.0 854650.0 580618.0 False True 491154.3656757823 463338.1556336176 518530.9460605244 433409.1768552562 425173.30758052244 502443.9381689557 522318.1095868049 532930.2178808907 644032.9592232695 543562.4621479205 0.9035840402498649 0.8524101421623347 0.9539491450743627 0.7973493517977919 0.7821976997830644 0.9243536357965514 0.9609164465162526 0.9804397010326728 1.1848370777450923 1.0 19.052086302979635 1.820530606221648 1.477651185300665 1.0806274708497026 0.8635971827677871 0.6152638474584431 0.06793221659089427 0.25767618873820236 1.0645735207889446 0.05074603836004549 0.021045168914436866 66.15011540965173 -1.820530606221648 -0.2170302880819155 HLDVDLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLDVDLDR 8 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 ; 167.04 0.00031497 665320000.0 253560.0 298170.0 251770.0 284340.0 267860.0 253020.0 254900.0 222470.0 288330.0 264400.0 False True 252194.8611331643 308094.40820242855 287217.02757592953 320337.41484596307 301970.3832693937 235529.32294501434 242569.51318743895 239071.84107977018 217274.9349240567 247525.7656357714 1.0188630685997488 1.2446963143860448 1.1603520418903095 1.294157858771488 1.2199553549255004 0.9515345699065141 0.9799768220669784 0.9658462845906678 0.8777871441624865 1.0 17.91721918152894 2.735609574665501 24.922383651639937 0.9561119574111119 1.1951822340392355 0.714531955498434 0.07342295159489737 128.80940117438485 1087827.052183355 0.022755054165713284 0.022328216902009614 544.013371695556 -2.735609574665501 0.23907027662812363 HLDVDLDRQS(ph)LS(ph)SIDKNPSER ddPTM_BT-474_Trastuzumab_2h_R1 2 HLDVDLDRQSLSSIDKNPSER 21 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 HLDVDLDRQS(0.996)LS(0.622)S(0.383)IDKNPSER;HLDVDLDRQS(1)LS(0.617)S(0.383)IDKNPSER 119.85 2.6281e-05 2463680000.0 2236160.0 1710560.0 1427040.0 1403130.0 1521770.0 2313890.0 1894440.0 1679970.0 2825030.0 2009240.0 True False 2224120.7630207343 1767494.955544646 1627954.8279459607 1580766.114133839 1715558.389262543 2153936.230611175 1802798.6997364152 1805337.8921148053 2128839.209962575 1881008.5830030933 1.1824086200977622 0.9396527860190733 0.8654691119733628 0.8403821909255156 0.9120417656593552 1.1450964392583172 0.9584213044143512 0.9597712144580025 1.1317541180826576 1.0 20.843075001187806 HLDVDLDRQS(ph)LSS(ph)IDKNPSER ddPTM_BT-474_Trastuzumab_2h_R1 1 HLDVDLDRQSLSSIDKNPSER 21 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 HLDVDLDRQS(1)LS(0.245)S(0.755)IDKNPSER 137.42 1.7799e-06 1032700000.0 780160.0 575270.0 523700.0 462130.0 562820.0 798850.0 678100.0 601110.0 1078500.0 694800.0 True False 775959.7052439245 594417.5141919414 597432.4079179979 520635.6106167438 634491.7909045025 743627.3797906286 645297.7124064435 645967.8805747322 812718.1261595935 650457.2691517934 1.192944935884548 0.9138456012138525 0.9184806385468783 0.8004147778925753 0.9754549929650104 1.1432378652026296 0.9920678006226634 0.993098103764886 1.2494565972325757 1.0 19.31109475873164 2.9827495063079215 24.307240255621956 1.0611560614231583 0.942828382815081 0.18538516305139185 0.11815768736117106 890.9556062567762 1255425.8353875314 0.0357277129134033 0.03874529066394863 961.0577966524185 -2.9827495063079215 -0.11832767860807736 HLDVDLDRQS(ph)LSSIDKNPSER ddPTM_BT-474_Trastuzumab_2h_R1 5 HLDVDLDRQSLSSIDKNPSER 21 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 HLDVDLDRQS(1)LSSIDKNPSER;HLDVDLDRQS(0.994)LS(0.005)S(0.001)IDKNPSER;HLDVDLDRQS(1)LSSIDKNPSER;HLDVDLDRQS(0.999)LS(0.001)SIDKNPSER;HLDVDLDRQS(1)LSSIDKNPSER 251.51 2.519e-32 8120110000.0 4365780.0 4078020.0 3787730.0 3473060.0 4100720.0 5069140.0 4515680.0 4069680.0 5625200.0 4338070.0 True False 4342275.12556376 4213754.430484855 4321009.460460642 3912749.039899136 4622922.385128311 4718722.283272033 4297239.30682721 4373380.187016308 4238944.833818216 4061210.658591417 1.0692070642476417 1.0375611571812298 1.0639707771178097 0.9634439995427931 1.1383113986831987 1.1619003986630592 1.0581178047822952 1.076866125563938 1.0437638404328535 1.0 21.95347843239602 7.4820322873387575 8.36395940522915 1.0653673013422187 1.057467497681799 0.0 0.05544554729101713 0.0 0.0 0.012315663730435694 0.0 30341167.45231394 -7.4820322873387575 -0.007899803660419646 HLEAADKGHS(ph)PAQKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 HLEAADKGHSPAQKPK 16 2 Q14966;Q14966-3;Q14966-4;A0A096LPI0;Q14966-2;Q14966-6;A0A096LPB4 Q14966 ZNF638 Zinc finger protein 638 1 HLEAADKGHS(1)PAQKPK;HLEAADKGHS(1)PAQKPK;HLEAADKGHS(1)PAQKPK 257.75 5.2568000000000006e-27 5216600000.0 8047700.0 5407600.0 4914300.0 4610900.0 4496500.0 7500100.0 7515300.0 5324900.0 12654500.0 6195100.0 True False 8004372.077383517 5587588.697036777 5606190.724138668 5194639.467233776 5069102.622156458 6981635.74033634 7151756.227766023 5722271.077294317 9535968.03661248 5799723.414108047 1.3801299658381256 0.9634233045397915 0.9666307035437924 0.8956702063752935 0.8740248905362752 1.2037877053504389 1.233120222659085 0.9866455119867743 1.6442108279536014 1.0 22.46755266980416 2.7109556144717293 23.451485560851335 1.1955326695831592 1.0036311891524032 0.17214537635186866 0.2139743799938158 630.9611350517041 536023.5021448057 0.0677457067350503 0.06389136676510367 513.991118257457 -2.7109556144717293 -0.19190148043075594 HLECTK ddPTM_BT-474_Trastuzumab_2h_R1 4 HLECTK 6 0 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ;;; 114.02 0.025639 1035640000.0 1687420.0 1819200.0 1733960.0 1565640.0 1641530.0 1491620.0 1898410.0 1693630.0 2463010.0 1909030.0 False True 1678335.1182099874 1879750.9722703786 1978086.4961494976 1763849.8634713143 1850569.1153894137 1388507.8202957944 1806576.6556695397 1820017.2706788813 1856034.1881431034 1787194.0709971902 0.9390894617692731 1.0517889482598524 1.106811245767952 0.9869380679442101 1.0354606393455985 0.7769205610228199 1.0108452601689388 1.0183657724778468 1.0385185460622655 1.0 20.769264874136095 6.9167158670082305 12.152123339288295 0.9977451919025966 0.36148414477321356 0.0 0.08415685568777674 0.0 0.0 0.018808583161847563 0.0 8254976.989320053 -6.9167158670082305 -0.636261047129383 HLEDEL ddPTM_BT-474_Trastuzumab_2h_R1 2 HLEDEL 6 0 O95881 O95881 TXNDC12 Thioredoxin domain-containing protein 12 0 ; 148.62 0.02499 526990000.0 942590.0 1200070.0 1051680.0 1069090.0 1004030.0 1088160.0 1101270.0 856870.0 1123350.0 866360.0 False True 937515.2001715937 1240013.6044923658 1199747.4026335687 1204436.6843837327 1131887.269147947 1012938.0604531133 1047997.3628400594 920813.9904976964 846515.4446188019 811068.1630718869 1.1559018623302806 1.5288648487888687 1.479218957491286 1.4850005698928916 1.3955513490518123 1.2488938742419042 1.2921199605108566 1.1353102395366523 1.0437044420689132 1.0 19.629463639672736 1.834106056406553 0.8836107774373058 0.9964169934232223 1.424316015845273 0.6896513235973392 0.10097916989835944 0.3077744128821176 0.44780291237134145 0.08614517619816045 0.03853098135881952 68.25053442598848 -1.834106056406553 0.4278990224220507 HLEEAFTSEHWLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLEEAFTSEHWLVR 14 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 0 262.64 8.2843e-25 114100000.0 13839.0 22430.0 25858.0 22152.0 27563.0 20421.0 21184.0 19098.0 23593.0 23211.0 False True 13764.492361657452 23176.56899077868 29498.58163823488 24956.44092870426 31072.984671299568 19009.34433586333 20159.2489892613 20523.189737679008 17778.821280003034 21729.654108063125 0.6334427733274376 1.0665871106608482 1.3575265161394803 1.1484969251969726 1.4299806392118066 0.8748111792911429 0.9277298611845322 0.9444784365004485 0.8181824336267703 1.0 14.407377589478049 HLEEEKER ddPTM_BT-474_Trastuzumab_2h_R1 1 HLEEEKER 8 1 Q9H6F5;Q9H6F5-2 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 119.75 0.00098223 77497000.0 52157.0 61850.0 52229.0 59032.0 65365.0 58869.0 64732.0 70664.0 109070.0 64743.0 False True 51876.19250718745 63908.639860885436 59582.38921739379 66505.44514731265 73688.84530129131 54799.52459272013 61600.665859746194 75937.30650452137 82191.15996312167 60611.04631072904 0.8558867675908213 1.0544058179304632 0.9830285541011496 1.0972495806517732 1.2157659335481115 0.9041177793200349 1.0163273794011698 1.2528624916854365 1.3560425857319778 1.0 15.887293127132459 1.7450931015331097 7.158292509841971 1.2262738627217182 1.0242715005590892 0.3082012337523772 0.12505832270512698 0.14577625175116346 23.06308553075238 0.059455001945030846 0.031588306866813964 55.60234415766601 -1.7450931015331097 -0.202002362162629 HLEEIVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 HLEEIVEK 8 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ;; 104.06 0.0046536 1003250000.0 2156650.0 2299160.0 2094760.0 1965690.0 1914570.0 2575720.0 2477450.0 2058140.0 2902720.0 2382300.0 False True 2145038.8360263407 2375686.1507284287 2389684.0000196802 2214546.1524532656 2158379.1409545424 2397666.538992697 2357606.2787219333 2211728.857823158 2187383.550455238 2230259.574410356 0.9617888700661463 1.0652061212903978 1.0714824531810263 0.992954442551269 0.9677703733320738 1.075061650447841 1.0570994989878009 0.9916912287700426 0.98077532120159 1.0 21.088780200958958 1.6132449533008288 8.233182198969887 0.9889873052662679 1.0286598474799526 0.14998314437513194 0.03971861618753271 0.20394734934975695 33.37733919259824 0.021019285093635334 0.010420855551459099 41.04355339521226 -1.6132449533008288 0.03967254221368477 HLEFSHDQYR ddPTM_BT-474_Trastuzumab_2h_R1 6 HLEFSHDQYR 10 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ;;;;; 229.53 9.1278e-10 7645130000.0 522567.0 669323.0 518496.0 577731.0 495492.0 626371.0 476287.0 382844.0 700484.0 614305.0 False True 519753.55733465194 691601.0114407019 591495.7299519766 650871.6853639056 558589.9691888237 583071.4470887339 453247.1782169708 411413.76332244097 527859.1042047071 575099.5289670295 0.9037627943605036 1.2025762091701373 1.0285101972077724 1.13175485734265 0.9712926911836294 1.0138618060355973 0.7881195434659372 0.7153783694822454 0.9178569579996461 1.0 19.13345213053091 2.320146707425458 4.427644862716062 0.8175340183615831 1.053702745863834 0.40778024093028475 0.10648080933917235 0.16506858845741856 5.986014680315831 0.037210119683719005 0.03028889003904974 209.00020275356198 -2.320146707425458 0.23616872750225082 HLEGLSEEAIMELNLPTGIPIVYELDK ddPTM_BT-474_Trastuzumab_2h_R1 5 HLEGLSEEAIMELNLPTGIPIVYELDK 27 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ;;;; 221.29 1.9657e-34 4739966000.0 2967070.0 2643070.0 2554980.0 2403860.0 2200820.0 3463350.0 3354670.0 2699970.0 4241530.0 3235650.0 False True 2951095.6247924636 2731042.9871804453 2914698.97571573 2708188.4295266797 2481081.381717865 3223936.7663489655 3192391.796016109 2901455.471569856 3196261.7650901196 3029148.046820666 0.9742328797332555 0.9015878210531486 0.962217405905578 0.8940429413376282 0.8190690396667666 1.064304786863338 1.0538909774868153 0.9578453831648032 1.0551685542226477 1.0 21.53048065957185 2.721749305918102 24.997990077554434 1.020504391067729 0.9117387957222243 0.5820045815970668 0.04902938277739446 654.4638972032728 973169.6480073617 0.016270875711719326 0.01537539662765674 526.9256087308801 -2.721749305918102 -0.10876559534550467 HLEHSTIIYEDPQHHPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLEHSTIIYEDPQHHPLLR 19 0 P61962;A0A087WWI6 P61962 DCAF7 DDB1- and CUL4-associated factor 7 0 ; 177.67 1.2201000000000001e-14 476210000.0 116058.0 168558.0 183643.0 178192.0 180853.0 182012.0 170534.0 39169.0 182077.0 120137.0 False True 115433.15662325588 174168.35113453722 209498.3381464293 200751.08892956248 203883.55755028597 169429.93885016174 162284.61891685665 42091.989676151876 137206.5630568013 112469.7538055397 1.026348442291782 1.5485794646236575 1.86270824873194 1.7849340123626596 1.8127856659382469 1.5064489173071922 1.4429178817039725 0.3742516387910741 1.2199418813882315 1.0 16.779177547864105 1.9141033443743638 6.666467230720297 0.8136249510588465 1.6084012818155384 0.5429674440319207 0.29733386834966874 0.1708161866121254 11.12884777965719 0.12948852090972923 0.07980175519071388 82.0546777767909 -1.9141033443743638 0.794776330756692 HLEIIYAINQR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLEIIYAINQR 11 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;; 164.64 2.2534e-05 2395280000.0 2562360.0 2863200.0 2602655.0 2669440.0 2532030.0 2575880.0 2692200.0 2329034.0 3450180.0 2679680.0 False True 2548564.538464957 2958499.881159054 2969086.2013172 3007390.8302961513 2854469.0119823874 2397815.478569295 2561968.0007972643 2502838.343675018 2599929.3690433963 2508660.528210527 1.015906500622822 1.1793145576653234 1.183534467070801 1.1988034237702851 1.137845866303215 0.9558150461591949 1.0212493767041342 0.9976791660449722 1.0363815031195047 1.0 21.258485827874186 2.7963585745300614 7.200714974774866 1.0034160415186493 1.15106879355151 0.6525455456172987 0.05123974388274937 0.15936360429889232 17.289002951538468 0.015577917665201767 0.016490523514462504 625.6890787362513 -2.7963585745300614 0.14765275203286077 HLEINPDHPIVETLR ddPTM_BT-474_Trastuzumab_2h_R1 15 HLEINPDHPIVETLR 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;;;;;;;;; 265.43 1.905e-25 108847939500.0 10438743.9 11265872.4 10404628.0 10231530.0 10226636.5 11485877.500000002 10654810.5 8071125.8 12297519.700000001 10122647.6 False True 10382542.862695873 11640850.152470317 11869509.183752198 11526840.648937585 11528938.040251505 10691885.82327237 10139396.610786252 8673434.191542367 9266960.748256547 9476611.56373337 1.0955965423790786 1.228376838512555 1.2525056138394821 1.2163462194705081 1.2165675423874405 1.1282393238728712 1.0699390328067615 0.915246355008922 0.9778770276625933 1.0 23.17593987380096 2.1778207650473242 1.8897545173306503 0.9567905816465584 1.2055037732031506 0.8254916374552126 0.047006185492908935 0.12414713962600855 0.8758989447506899 0.024388910423297803 0.014743630974078178 150.5985412118919 -2.1778207650473242 0.24871319155659222 HLEINPDHSIIETLR ddPTM_BT-474_Trastuzumab_2h_R1 10 HLEINPDHSIIETLR 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;;;;; 256.18 5.5171e-25 70587800000.0 7822942.0 8628305.0 8625132.0 8779739.0 8394244.0 8664858.0 8867731.0 7345451.0 10148640.0 8625848.0 False True 7780824.149482561 8915492.916004477 9839475.614608709 9891253.057193069 9463201.216817772 8065876.761341756 8438764.973507889 7893605.853064394 7647643.656808795 8075338.995679989 0.9635291043069545 1.1040394614732507 1.2184597600017124 1.22487155802184 1.171864267479079 0.9988282554647805 1.0450044237179787 0.9774952924313374 0.947036856396989 1.0 22.94509139348008 2.7308321950824803 23.860575375976115 0.995352169799045 1.144203514035989 0.4928820382059509 0.07224618032033628 283.2714103105634 874563.7308879843 0.024892883237540266 0.023903724663895554 538.0618432665772 -2.7308321950824803 0.14885134423694402 HLEPALAFQLELNR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLEPALAFQLELNR 14 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4;O00763-3;O00763-2;O00763;F8W8T8;H0YGH5 Q13085 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase 0 145.29 8.621000000000001e-06 242640000.0 107800.0 107460.0 109360.0 96701.0 90641.0 116250.0 114310.0 91743.0 129200.0 102850.0 False True 107219.61677770599 111036.74113905836 124756.93742583982 108943.33668502315 102183.59407870207 108213.91112306509 108780.38859339402 98589.32852151459 97360.39119130229 96286.02494568496 1.113553257995526 1.1531968549090514 1.2956910153494792 1.1314553357715016 1.0612505203776346 1.1238797238135925 1.1297630020011433 1.0239214733096411 1.0111580704076566 1.0 16.55503879854618 2.0778732763886896 0.6152286112047686 0.9901382232770944 1.1777800489734924 0.5517210345405901 0.055512596160319456 0.6039957173185814 0.45517556953541066 0.05329110545326452 0.034842526659536056 119.63913830575929 -2.0778732763886896 0.18764182569639798 HLEPEPEEEIIAEDYDDDPVDYEATR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLEPEPEEEIIAEDYDDDPVDYEATR 26 0 O60828-2;O60828;A0A5H1ZRR1;O60828-3;O60828-5;O60828-4;O60828-6;O60828-10;O60828-9;O60828-8;O60828-7 O60828-2 PQBP1 Polyglutamine-binding protein 1 0 ;; 264.52 5.1915e-53 584342000.0 251403.0 296341.0 248768.0 288442.0 262182.0 283048.0 297590.0 236613.0 307535.0 284713.0 False True 250049.47418149904 306204.5310430827 283792.37206978165 324958.7276253754 295569.32362553664 263481.5579833233 283194.43479580234 254270.26355646906 231747.1200078726 266542.372584937 0.9381227898457971 1.148802451458283 1.064717663152592 1.2191634841166699 1.1089018258489083 0.9885165927956225 1.0624743527619007 0.9539581308988412 0.8694569563569992 1.0 18.024005372745414 2.029859047230551 1.3014134731650036 0.9325202580979478 1.097704852046244 0.3789771326167267 0.07908353611306733 0.4363122062652218 1.376248135406539 0.055043658189513706 0.026361274629625155 107.11715939193157 -2.029859047230551 0.1651845939482962 HLETSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLETSK 6 0 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 69.234 0.094041 55583000.0 174590.0 203970.0 175360.0 149350.0 156830.0 109920.0 194930.0 180580.0 261300.0 198790.0 False True 173650.0268387724 210759.01814753105 200049.16374355607 168257.69468679966 176801.37089576278 102321.48912384774 185500.49119508616 194055.7965666601 196906.11624061354 186103.05200731856 0.933085325392426 1.1324855550420683 1.0749375767125466 0.9041103457034271 0.9500186535834458 0.5498109140081374 0.9967622196104086 1.042733015249147 1.058048828951339 1.0 17.505742189585185 3.739525282803371 24.687498385974482 0.927163743514176 1.0554010975660262 0.12384098469148819 0.14330737379647748 155.65476135958832 3983420.6967478627 0.03986251791626502 0.06698217602215834 5489.4051169127815 -3.739525282803371 0.12823735405185022 HLEVLNVSENK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLEVLNVSENK 11 0 Q15813-2;Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8Y7E7;A0A2R8Y6Q1;A0A2R8YFL4;A0A2R8YER9;A0A2R8Y897;A0A2R8Y6L2;A0A2R8Y809;A0A2R8Y4V6;A0A2R8Y4E7 Q15813-2 TBCE Tubulin-specific chaperone E 0 142.71 3.753e-05 122990000.0 294190.0 273730.0 238400.0 238090.0 256470.0 330410.0 312840.0 272410.0 389230.0 291010.0 False True 292606.1137275821 282840.93757672084 271964.647790053 268232.1695880824 289129.9342832126 307569.534401479 297706.7340351447 292738.6174699514 293309.48191478755 272437.49265380413 1.0740302697595552 1.0381865389435834 0.9982643913686579 0.9845640810126469 1.0612707210993904 1.128954504042211 1.0927524370276416 1.0745166335895795 1.0766120296353858 1.0 18.055565734114243 3.011458271889249 23.81252535038652 1.08170761394641 1.0229638196334638 0.2836462968481632 0.03745955324079278 137.55390181196228 285859.88037563267 0.010721336440862383 0.012801867726060194 1026.734775658058 -3.011458271889249 -0.058743794312946074 HLEVQILADQYGNAISLFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLEVQILADQYGNAISLFGR 20 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 179.03 5.973899999999998e-17 26606000.0 44017.0 44912.0 46160.0 51903.0 52252.0 55835.0 54861.0 41314.0 62442.0 54438.0 False True 43780.017362748426 46406.86877012271 52658.92677008749 58473.91447826549 58905.9824781317 51975.257871452326 52207.16384062803 44397.060468241165 47054.005779932566 50963.7202332834 0.8590428085380738 0.9105863653143458 1.0332630060961874 1.1473635403892146 1.1558414928991265 1.0198481907038708 1.0243986035880592 0.8711503058453398 0.923284359237231 1.0 15.637182974376962 -1.1318472210820167 6.810340718748897 1.0000000062177716 0.9948808967563327 0.0002504559226816916 0.09905553733874868 1.0600027268765095e-08 1.2918954795091928e-09 0.10735267813985865 0.0253032379791329 0.0738163860509901 1.1318472210820167 -0.005119109461438898 HLFLTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLFLTSK 7 0 J3KQ32;Q9NTK5;Q9NTK5-3;Q9NTK5-2;C9JCJ9 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 143.85 0.0023936 1346290000.0 1919670.0 1932480.0 1858770.0 1578570.0 1562720.0 2102100.0 2044290.0 1881810.0 2645300.0 1970270.0 False True 1909334.7100153852 1996801.428591172 2120468.6592815313 1778416.8001455702 1761723.129032878 1956786.7748111414 1945399.882753824 2022240.2178375593 1993401.2602039594 1844525.6817669866 1.0351358774177186 1.082555503742464 1.1496010493332907 0.964159413840155 0.955109026915371 1.0608617674201277 1.0546884231452953 1.0963470109564042 1.0807121201448144 1.0 20.814818445480753 -0.8982964449885097 8.05093291680682 1.0000000004894407 1.0547971520959114 0.07604387067058838 0.05543695550708807 0.0 0.0 0.05674591176122041 0.013375139670324141 0.12638733458977644 0.8982964449885097 0.054797151606470695 HLFNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLFNLK 6 0 Q7LBR1 Q7LBR1 CHMP1B Charged multivesicular body protein 1b 0 ; 148.62 0.010742 1937260000.0 4056500.0 4401000.0 4253800.0 3761400.0 3282000.0 4172600.0 4331900.0 3759900.0 6093400.0 4194900.0 False True 4034660.2547195232 4547484.624539323 4852698.065307579 4237592.854334964 3699943.246061938 3884157.9832438855 4122349.4475349784 4040482.8303853446 4591763.217376791 3927177.8905654247 1.0273688554858469 1.1579522881976168 1.2356705503373315 1.0790427559992315 0.9421379293641393 0.9890455924023993 1.049697661376234 1.0288514915741713 1.1692272021616217 1.0 21.905061519002505 3.4817979288960808 24.957338934712173 1.028907542950394 1.1446367302255829 0.31904075317279645 0.07231295931173085 218.0669450528015 1163730.653068506 0.020053708672508466 0.027846653058492012 3032.479885723018 -3.4817979288960808 0.11572918727518888 HLFQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLFQEK 6 0 P25325-2;P25325;F8WB46;F8WBS0;C9JJV8;B4DKT6;Q07001-2;Q07001 P25325-2 MPST;CHRND 3-mercaptopyruvate sulfurtransferase;Acetylcholine receptor subunit delta 0 104.11 0.03411 286280000.0 508000.0 566310.0 506200.0 478140.0 457560.0 624580.0 567680.0 479660.0 845630.0 602950.0 False True 505264.98444410576 585159.2860083756 577468.5600307256 538672.4749752019 515827.5538294023 581404.2547031738 540219.1496518056 515454.6648641279 637235.8173614625 564469.2147885344 0.8951152183443553 1.0366540294453297 1.023029325429308 0.9542991200627359 0.9138276106388643 1.0300017068618768 0.9570391714881855 0.913167009572402 1.128911552067881 1.0 19.106535375394316 1.2424777197222812 24.999917643224077 1.0644557726854615 0.9666412717138768 0.3330818385463409 0.056048503767405576 104.13439941823988 664645.8118646855 0.03984004140728823 0.013343828490384993 17.47743596964888 -1.2424777197222812 -0.09781450097158473 HLFS(ph)STENLAAGSWK ddPTM_BT-474_Trastuzumab_2h_R1 3 HLFSSTENLAAGSWK 15 0 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 HLFS(0.369)S(0.262)T(0.369)ENLAAGSWK;HLFS(0.333)S(0.333)T(0.333)ENLAAGSWK;HLFS(0.333)S(0.333)T(0.333)ENLAAGSWK 203.56 3.4442e-09 3142200000.0 2324850.0 1816310.0 1719090.0 1672120.0 1677240.0 2040080.0 1753060.0 1821910.0 2512290.0 1789960.0 True False 2312333.265915116 1876764.7803674198 1961122.9294018575 1883810.2205536743 1890826.5722196607 1899054.0714317649 1668257.790460462 1957870.1756715218 1893169.7924612728 1675723.2203381446 1.3799016674415419 1.1199730108106438 1.1703143488135959 1.1241774284022512 1.1283644872081622 1.1332743071069662 0.9955449505102781 1.1683732444051487 1.1297628209026367 1.0 20.676352447704684 7.4562175978508884 1.1671720153786294 1.1067330643862903 199.99999999986608 0.6590848219304648 0.05851269440883258 663.7027646931414 1.5903081024714187 0.015494431810246755 352591.25925771357 28590226.623330884 -7.4562175978508884 198.8932669354798 HLFS(ph)STENLAAGSWKEPAEGGGLSSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 HLFS(0.391)S(0.305)T(0.305)ENLAAGSWKEPAEGGGLSSDR;HLFS(0.509)S(0.376)T(0.115)ENLAAGSWKEPAEGGGLSSDR 291.45 9.982499999999995e-71 1295680000.0 916570.0 905640.0 954110.0 1066440.0 1068000.0 1205400.0 903510.0 970140.0 1589340.0 1139060.0 True False 911635.2889604993 935783.6799290581 1088440.3947272138 1201451.1946554442 1204003.4694680513 1122073.5352063891 859803.7695566221 1042536.7730711015 1197668.453064893 1066364.2156016703 0.854900488616013 0.8775460262430737 1.0207022880199403 1.1266799626969424 1.1290733989875321 1.0522423003225836 0.8062946570947137 0.9776554368742346 1.1231326366190348 1.0 20.024268842597927 4.2556924957555635 5.499311290930154 1.022641674771839 0.8626983901113575 0.3393321484726266 0.09087406407345776 0.21312136893890626 19.18728483241134 0.025084540668222802 0.0661367123926758 18017.415575504183 -4.2556924957555635 -0.15994328466048147 HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 HLFS(0.002)S(0.868)T(0.13)ENLAAGSWKEPAEGGGLSSDR 257.71 3.7715999999999994e-53 385830000.0 136060.0 146180.0 132680.0 179030.0 109840.0 144400.0 133380.0 134070.0 210940.0 144350.0 True False 135327.46807768717 151045.51293232397 151360.19072476617 201695.1796436405 123827.47292731344 134417.96788103718 126927.89983891955 144074.98419366564 158956.66345118656 135137.45941574732 1.0014060399149232 1.1177175713185186 1.1200461469318437 1.4925186585247978 0.9163075394688385 0.9946758542167303 0.9392503040065949 1.0661365458294005 1.1762590782631188 1.0 17.04406811225723 HLFSST(ph)ENLAAGSWK ddPTM_BT-474_Trastuzumab_2h_R1 3 HLFSSTENLAAGSWK 15 0 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 HLFS(0.058)S(0.388)T(0.554)ENLAAGSWK;HLFS(0.044)S(0.364)T(0.593)ENLAAGSWK;HLFS(0.262)S(0.289)T(0.449)ENLAAGSWK 293.83 1.9998e-43 3923690000.0 3964030.0 3186770.0 3094230.0 2951330.0 2925980.0 3679900.0 2967180.0 3020640.0 3988930.0 3305420.0 True False 3942688.102925137 3292839.7130068517 3529870.6884707077 3324968.0753933173 3298586.2093578046 3425517.1745528304 2823646.1676716553 3246055.4952991274 3005911.6504235384 3094465.265687562 1.2741096649695656 1.06410621231362 1.140704575879737 1.0744887371209642 1.0659632363412193 1.1069819437096546 0.9124827474979806 1.0489875363257255 0.9713832253197556 1.0 21.561258697603048 7.999999999999901 0.3059421797844004 0.9871808972480969 3.1479877193997168 0.6352453442058197 0.056594525668042586 34.35410629777741 0.49189079777121303 0.05276440647892619 40.893307072230165 99999999.9999773 -7.999999999999901 2.1608068221516197 HLFVHISQHCPS(ph)PGAPPLESVDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLFVHISQHCPSPGAPPLESVDVR 24 0 Q15562-3;Q15562;Q15562-2;Q15562-4 Q15562-3 TEAD2 Transcriptional enhancer factor TEF-4 1 HLFVHISQHCPS(1)PGAPPLESVDVR 94.929 0.012133 244760000.0 34097.0 77120.0 70393.0 98484.0 91485.0 69316.0 75017.0 34367.0 54863.0 55597.0 True False 33913.42554053284 79686.89257997557 80303.72253307556 110952.06430220803 103135.07247592196 64524.34807231284 71388.14111723074 36931.64005208998 41342.748776535685 52048.75186101356 0.6515703898355197 1.5310048700642138 1.542855873806765 2.1316950039164193 1.9815090427398692 1.2396905932463669 1.371562978260447 0.7095586105639767 0.7943081687517455 1.0 15.66757594738699 1.9840391595438025 2.0676033744396065 0.8063202243038473 1.5754381734338374 0.37298511626333464 0.3872640537149533 0.332880388960283 2.6435525045631327 0.23380856157148594 0.12087010291134176 96.39159342528323 -1.9840391595438025 0.7691179491299901 HLGVCISVANNR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLGVCISVANNR 12 0 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 90.653 0.0049941 0.0 422050.0 415450.0 380480.0 440930.0 442450.0 522240.0 461820.0 440420.0 569460.0 502830.0 False True 419777.7296941628 429278.00210517144 434048.2768085541 496751.69279042835 498793.3848933899 486138.778020727 439480.0022762775 473286.37680744537 429124.21337305696 470738.95890557853 0.8917420616090592 0.9119236765599352 0.9220572646412639 1.0552593606132088 1.0595965671781982 1.032714137684613 0.9335959855500913 1.0054115297951742 0.9115969801410282 1.0 18.844567731530226 3.8942585242281376 6.323854731107324 0.9998775132877501 0.9054132988558734 0.4669031539467855 0.044924637137550405 0.21439670095813726 10.910082533691297 0.012208812367799835 0.022364045069173437 7838.961369220819 -3.8942585242281376 -0.09446421443187669 HLHPSCLGS(ph)PPLR ddPTM_BT-474_Trastuzumab_2h_R1 5 HLHPSCLGSPPLR 13 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 1 HLHPSCLGS(1)PPLR;HLHPS(0.077)CLGS(0.923)PPLR;HLHPSCLGS(1)PPLR;HLHPSCLGS(1)PPLR;HLHPSCLGS(1)PPLR 152.94 2.0754e-06 3430160000.0 1206250.0 2072980.0 2185510.0 2363860.0 2213830.0 2174460.0 2080120.0 895861.0 1944360.0 1712300.0 True False 1199755.6840269738 2141977.8861571285 2493210.811206539 2663124.4336279747 2495748.1281015556 2024144.6983282599 1979496.6487699307 962714.6969099827 1465198.531089166 1603019.5480262153 0.7484348431709539 1.3362144515296324 1.5553215269747702 1.6613175035245564 1.5569043628785124 1.2627074328697816 1.2348549655600074 0.600563292004371 0.9140241196018182 1.0 20.612360587872484 1.9130703837860832 4.723640013174436 0.8084478873051568 1.3765381863767632 0.4479446706059045 0.2545248879027063 0.19283644971058306 7.176487749912775 0.12222388037960508 0.07191863290716642 81.85974430986877 -1.9130703837860832 0.5680902990716064 HLIEQDFPGMR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLIEQDFPGMR 11 0 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1 A0A024R571 EHD1 EH domain-containing protein 1 0 ;; 174.23 1.1254e-05 1697580000.0 678664.0 840132.0 785245.0 824959.0 794533.0 807868.0 789245.0 697950.0 847475.0 799686.0 False True 675010.1484306582 868095.2857494807 895800.6705281058 929398.7248150475 895712.0679839505 752021.9866767173 751066.204141312 750034.5731182884 638626.1418331951 748649.3548343709 0.9016372539050616 1.1595485658857418 1.1965557236421986 1.2414339487685326 1.1964373737851084 1.0045049552511705 1.003228279422582 1.0018502898252333 0.8530377241485542 1.0 19.513930635722605 2.624353545694022 4.696748831830179 0.973840098954334 1.1486924258298048 0.43185724165809747 0.09567391430054975 0.22681076276732187 7.844307768739134 0.032513397735882396 0.03051153629638599 421.06926835628764 -2.624353545694022 0.1748523268754708 HLIPAANTGESK ddPTM_BT-474_Trastuzumab_2h_R1 6 HLIPAANTGESK 12 0 P62258;P62258-2 P62258 YWHAE 14-3-3 protein epsilon 0 ;;;;; 188.91 8.6019e-06 8427910000.0 13261400.0 11465400.0 10870200.0 10162700.0 10360400.0 13817600.0 13058600.0 11881100.0 16755100.0 12940700.0 False True 13190002.095880039 11847018.908019347 12400629.67452783 11449296.777994901 11679735.529098136 12862421.835131727 12426905.629303604 12767728.013003336 12626030.111837376 12114813.446909321 1.0887499137879846 0.9778952816678912 1.0235922929289039 0.945065875605026 0.9640871137044063 1.061710268300758 1.025761204145814 1.0538939017885236 1.0421976506009238 1.0 23.530268853458825 2.729221441409654 24.98026643478651 1.040225868076778 0.9969291596734584 0.1726323193908803 0.03968915873154948 1035.0053098422122 2768407.367269205 0.012566561171088347 0.01198739252650046 536.0699232942382 -2.729221441409654 -0.04329670840331956 HLLDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLDEK 6 0 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 0 117.7 0.065135 0.0 405950.0 361460.0 319770.0 325360.0 327660.0 399190.0 375940.0 353160.0 512290.0 373600.0 False True 403764.4103052846 373490.9775928162 364790.83650933456 366550.5426400879 369385.55880702456 371594.9348921833 357754.345969736 379514.5925101436 386042.99383430457 349756.5281449474 1.1544156515013066 1.0678599183659345 1.0429850686250997 1.0480163003224363 1.0561219851025694 1.0624388824507816 1.022866815001875 1.0850822271224734 1.1037477867298566 1.0 18.415991459730908 4.7315926432666355 3.785551348626633 1.055851233928654 1.163814695621962 0.5446365817773207 0.027627963432490993 0.1869969275140238 5.218410243580562 0.006460997365899327 0.05583233803739617 53900.48130807188 -4.7315926432666355 0.10796346169330784 HLLENAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLLENAK 7 0 Q96A70-3;Q96A70-4;Q96A70;Q96A70-2 Q96A70-3 AZIN2 Antizyme inhibitor 2 0 ; 142.64 0.0060716 159730000.0 390540.0 356700.0 361910.0 366030.0 351360.0 450040.0 442090.0 413930.0 542080.0 462290.0 False True 388437.3760330727 368572.54387029645 412863.7822218885 412369.36047009885 396103.6133261192 418929.7940802084 420704.41775219666 444819.55849395035 408491.64749985334 432786.2564136191 0.8975270593201056 0.8516271910401129 0.9539669435050394 0.9528245279489477 0.9152407394091511 0.9679831276338685 0.9720835898035642 1.0278042611150546 0.9438646478400481 1.0 18.723295160018502 4.013252391770102 0.41320171284639867 1.000617693678134 0.8291530431784387 0.5827807413778187 0.031001443441717628 2.021683940501955 0.4210607738408398 0.026843040432571765 0.16268447869006034 10309.85107004846 -4.013252391770102 -0.17146465049969517 HLLGAEHGDEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLGAEHGDEPR 12 0 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0 U3KQC1 WDR18 WD repeat-containing protein 18 0 142.83 3.5676e-05 217500000.0 77580.0 97113.0 78354.0 98263.0 84541.0 95508.0 92578.0 44823.0 99043.0 76584.0 False True 77162.3178999483 100345.3474989519 89385.56213482315 110703.08572486753 95306.79523623457 88905.75676164888 88099.64845769608 48167.91986658213 74635.17975820536 71696.34355313887 1.0762378396990113 1.3995880755701213 1.2467241382898926 1.5440548323474572 1.3293117962926024 1.2400319508031115 1.22878858379158 0.671832306634741 1.040990042998334 1.0 16.12961192424699 1.8980829606737468 6.04894636726478 0.8796735468076599 1.3128199707162571 0.6048013813241093 0.14529250087518872 0.1392617796412365 6.861059367590732 0.062161858619625594 0.037747584989164425 79.08296810294185 -1.8980829606737468 0.43314642390859726 HLLGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLGLK 6 0 P43155-2;P43155;P43155-3;H0Y4Z7 P43155-2 CRAT Carnitine O-acetyltransferase 0 100.78 0.037275 297800000.0 499830.0 584340.0 599520.0 521580.0 524860.0 797990.0 634980.0 532230.0 893510.0 620550.0 False True 497138.97081633355 603789.4036590107 683927.204878744 587611.9745211984 591697.8099110512 742826.8295664064 604263.591540839 571947.705209178 673316.432920592 580945.9677204164 0.855740462003834 1.039321102491218 1.1772647421281146 1.0114744006692031 1.018507473651679 1.2786504612144862 1.0401373365442557 0.9845110164951367 1.159000096967072 1.0 19.14804446297754 4.708811992308718 3.937241370503465 1.079355290335067 0.8409178423432234 0.3624862673769006 0.09003461811069058 0.23649329373272637 7.318249127656977 0.02168837985195666 0.15237498122340049 51146.03745158445 -4.708811992308718 -0.23843744799184352 HLLMS(ph)ISK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLMSISK 8 0 Q8TD26 Q8TD26 CHD6 Chromodomain-helicase-DNA-binding protein 6 1 HLLMS(0.5)IS(0.5)K 74.439 0.042982 46302000.0 44432.0 80961.0 84590.0 97247.0 97406.0 63711.0 55351.0 45211.0 38661.0 62775.0 True False 44192.78304885929 83655.73794304206 96499.53673053943 109558.46022904037 109810.0767294056 59306.80852956215 52673.46066864627 48584.874396806204 29133.51458085863 58768.64575561858 0.7519789248271769 1.423475679376943 1.6420241693473698 1.8642331947655273 1.868514669982968 1.0091573111312016 0.8962850852082196 0.826714207416652 0.4957322770717976 1.0 15.842759033292747 2.5510214736616175 4.893083558866491 0.8123311627345612 1.5307905913170612 0.5304402041731502 0.3164940952111489 0.18014662452816846 7.9692535418966735 0.111366200622431 0.10310753120236328 355.6489031704829 -2.5510214736616175 0.7184594285825 HLLPVETQR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLLPVETQR 9 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 111.61 0.0020974 527470000.0 587650.0 713980.0 695210.0 734200.0 587020.0 663720.0 692910.0 569910.0 803980.0 668790.0 False True 584486.1576940535 737744.392689975 793089.5251263538 827149.6447207781 661773.5174598646 617838.5986288227 659391.2961267487 612439.5781443418 605849.9017800556 626107.2496200748 0.9335240217210755 1.1783035464573237 1.2666991567460764 1.3210989734150131 1.0569651091908492 0.98679355494403 1.0531602956631965 0.9781703989467834 0.9676455625576745 1.0 19.256050280543718 3.0147812081423133 23.928274355246195 1.0013117137270677 1.1826215833508926 0.43052590618615694 0.09637581113566565 136.5758600136469 221090.5427669529 0.028845230675962515 0.03446151329957929 1034.6208069853215 -3.0147812081423133 0.1813098696238249 HLLQAPLDDAQEILQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLLQAPLDDAQEILQAR 17 0 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ;; 260.24 3.095e-27 1021147000.0 562482.0 652613.0 642599.0 632782.0 629998.0 656325.0 659735.0 560051.0 713285.0 658350.0 False True 559453.6594096248 674334.829192111 733071.3536293642 712892.1363193991 710224.5110093014 610954.7975728657 627821.0976175553 601844.8495013542 537505.4692793187 616333.5393582073 0.9077125025391091 1.0941069828753778 1.1894068825018298 1.1566661406447862 1.1523379236328166 0.9912730016430025 1.018638541513269 0.9764921281552513 0.8721016056322802 1.0 19.233351775602046 2.632338445261061 5.122584893064749 0.9723706801421369 1.1075104647918808 0.3897494195686886 0.08022444379421122 0.2472719394308316 9.786012325485833 0.027503137740094535 0.025852604192303476 428.8826180004288 -2.632338445261061 0.13513978464974385 HLLQAPVDDAQEILHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLLQAPVDDAQEILHSR 17 0 F5H365;Q15436;Q15436-2 F5H365 SEC23A Protein transport protein Sec23A 0 ; 216.17 3.1099e-15 1578010000.0 553460.0 670860.0 621030.0 664040.0 657300.0 671890.0 697030.0 513680.0 781840.0 634940.0 False True 550480.2328551874 693189.1695565666 708465.6259104728 748107.3959144455 741003.2588776702 625443.825758935 663311.9959868208 552013.4100141877 589166.008119254 594417.5856005175 0.9260833565330309 1.1661653126501363 1.1918651854735034 1.258555288465534 1.2466038637283297 1.05219603341155 1.115902375796473 0.9286626496026519 0.9911651714073062 1.0 19.18111727248587 2.049686586341169 1.8206251722236548 0.96852943757105 1.159770766236336 0.37676267977119704 0.09405047298127722 0.3493532078129858 2.186117278572719 0.05648053327918477 0.029794206805161098 112.12090287487536 -2.049686586341169 0.19124132866528587 HLLS(ph)PQLVQYQCGDSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLSPQLVQYQCGDSGK 17 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 HLLS(1)PQLVQYQCGDSGK 75.564 0.0035769 0.0 131500.0 119000.0 96917.0 98188.0 89998.0 117650.0 113020.0 105200.0 167370.0 125100.0 True False 130792.01861102361 122960.84306298086 110562.0711823346 110618.59073255758 101458.71184006163 109517.13241831052 107552.7908216726 113050.55819477582 126123.90614309796 117116.01089650152 1.116773168842029 1.0499063460387543 0.9440389092490624 0.9445215038131218 0.8663094914471032 0.935116655527942 0.9183440419322326 0.9652869605905682 1.0769142935935287 1.0 16.837578794187067 4.410066487005579 2.8555951388013994 0.9492251368294774 1.1116081663829571 0.4986007717214006 0.05244997434477816 0.21394703587822117 3.296432757281029 0.01351786950713689 0.05661958624069305 25707.893198919184 -4.410066487005579 0.16238302955347972 HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 3 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK 126.18 4.9948e-05 140288000.0 243326.0 194591.0 185937.0 162910.0 172484.0 228977.0 225079.0 187799.0 318467.0 217958.0 True False 242015.95985206007 201067.8438022563 212115.3134066237 183534.3892964616 194448.8150072355 213148.35894387992 214191.0688847216 201813.5150039993 239985.07508916748 204047.73383676785 1.1860752153496872 0.9853961130639394 1.0395377072715235 0.899467912950622 0.9529574837757757 1.0446004713504553 1.0497105988742228 0.9890505089629867 1.176122226778311 1.0 17.638547162486333 -0.07396914034260565 8.00847752598864 1.0000000031059249 1.0260529603998083 0.003918193599902975 0.0857917961213697 0.0 0.0 0.07975860889984084 0.018799284418862076 0.8433946847203606 0.07396914034260565 0.02605295729388346 HLLTDLPLPPELPGGDLS(ph)PPDSPEPK ddPTM_BT-474_Trastuzumab_2h_R1 5 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 HLLTDLPLPPELPGGDLS(1)PPDSPEPK;HLLTDLPLPPELPGGDLS(0.942)PPDS(0.058)PEPK;HLLTDLPLPPELPGGDLS(1)PPDSPEPK;HLLTDLPLPPELPGGDLS(0.984)PPDS(0.016)PEPK;HLLTDLPLPPELPGGDLS(0.991)PPDS(0.009)PEPK 191.25 3.8864999999999985e-18 3162060000.0 1992871.0 1632426.0 1464776.0 1425811.0 1521010.0 1934052.0 2101184.0 2080538.0 4142235.0 1981369.0 True False 1982141.6039647837 1686760.3125876426 1671003.7287387718 1606318.5264083028 1714701.607767417 1800355.5375086998 1999541.7026176362 2235798.3103178963 3121436.687355288 1854916.3340846556 1.0685881446738728 0.9093457648697708 0.9008512664606843 0.8659789645989461 0.9244091370911184 0.9705858449929065 1.0779686748536552 1.2053364721817463 1.682791094130734 1.0 20.822922684944754 1.7692690639199962 2.175204696869337 1.3535420714363797 0.9362697809232182 0.48401825278987765 0.16459275493948872 0.21460436335410762 2.026849512572957 0.10035328743791738 0.04390458847629259 58.78534399660099 -1.7692690639199962 -0.4172722905131615 HLLTDLPLPPELPGGDLSPPDS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 HLLTDLPLPPELPGGDLS(0.462)PPDS(0.538)PEPK 147.53 1.2140000000000002e-07 1093700000.0 126350.0 116840.0 91821.0 107330.0 99110.0 118990.0 115800.0 114450.0 177390.0 117730.0 True False 125669.74563880466 120728.9487687285 104748.59867756073 120917.96699520726 111731.07102900621 110764.5013723312 110198.31160104129 122990.84016532425 133674.61140421891 110216.37060627606 1.1402094348373384 1.095381276888588 0.9503905644992816 1.0970962510384261 1.0137429713426247 1.0049732246039313 0.9998361495199358 1.1159035585074943 1.2128380808486454 1.0 16.749978999964853 1.6242625788096707 6.745889810997273 1.1251770206729539 1.0412441082967208 0.14356153506612912 0.07159789572703025 0.19126477097928277 18.519225346304676 0.03640678357434012 0.017855869799130723 42.09810808479887 -1.6242625788096707 -0.08393291237623313 HLLVPER ddPTM_BT-474_Trastuzumab_2h_R1 1 HLLVPER 7 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 75.109 0.044361000000000005 119830000.0 63574.0 83704.0 76498.0 68734.0 58138.0 72777.0 72957.0 64207.0 93670.0 74520.0 False True 63231.72464773543 86490.03703986357 87268.25346746432 77435.71735254413 65541.52968907636 67746.09728863061 69427.79118719498 68998.45237653983 70586.28361369405 69764.0698002181 0.906365193842773 1.2397504515941125 1.2509054262082557 1.1099655965355113 0.9394739996787208 0.9710743292734166 0.9951797735713224 0.9890256198373927 1.0117856342932758 1.0 16.09019658407552 3.3583015217394134 5.4269132296139615 0.984864266920402 1.1485711065596145 0.3717496655110618 0.09001623190146633 0.19962602621212963 8.69255429868414 0.02472860763881169 0.03365785951499773 2281.9258163852082 -3.3583015217394134 0.1637068396392125 HLLVSNVGGDGEEIER ddPTM_BT-474_Trastuzumab_2h_R1 4 HLLVSNVGGDGEEIER 16 0 O75694;O75694-2;E9PF10 O75694 NUP155 Nuclear pore complex protein Nup155 0 ;;; 216.26 1.5343e-14 1303210000.0 782425.0 923470.0 845490.0 884591.0 924944.0 960338.0 963605.0 790643.0 1080918.0 975458.0 False True 778212.5107355895 954207.1407005966 964527.6428691767 996580.1299008422 1042730.1358273954 893952.0944524906 916991.744821428 849644.7954638033 814540.2424591327 913203.4353083901 0.852178693866593 1.0449009539461047 1.0562023811741952 1.0913013369954043 1.1418377280581122 0.9789188913318112 1.0041483741372026 0.930400349596667 0.8919592403680143 1.0 19.800576761170973 2.053586749155799 1.9772909754651633 0.9351660822760609 1.0397457867538515 0.20031157850777348 0.07611753685758045 0.48257257790923586 3.576722452806104 0.04349932992394913 0.023637500313417645 113.13233455642587 -2.053586749155799 0.10457970447779064 HLMLPDFDLLEDIESK ddPTM_BT-474_Trastuzumab_2h_R1 15 HLMLPDFDLLEDIESK 16 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;;;;;;;;;;;; 273.38 2.5363000000000003e-35 10646744000.0 6995014.6 6396585.6 5722477.0 5619621.5 5680583.5 7191734.8 7320162.0 6251761.5 9977382.2 6976078.4 False True 6957354.218612782 6609492.084878357 6528152.020938256 6331065.005707229 6403972.137268708 6694587.100798738 6966057.798325577 6718299.688931647 7518590.046881842 6530859.103990806 1.0653045958932659 1.0120402200744922 0.9995854935760448 0.969407685098965 0.9805711676363433 1.0250699018614384 1.0666372811608864 1.0287007546719698 1.1512405836909672 1.0 22.63884135336897 2.400321464321373 4.001946464887844 1.0602033991906887 1.0032700829387395 0.27332945730455305 0.04311070468059201 0.2954037565551407 9.260438295985342 0.015285858722018038 0.012688179005893828 251.3746415513745 -2.400321464321373 -0.056933316251949195 HLNEIDLFHCIDPNDSK ddPTM_BT-474_Trastuzumab_2h_R1 8 HLNEIDLFHCIDPNDSK 17 0 A0A087WYT3;Q15185-4;Q15185;Q15185-3 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 ;;;;;;; 293.35 2.7357999999999996e-46 19926640000.0 16597040.0 14639090.0 12687830.0 12769830.0 12299940.0 16488400.0 16074300.0 11394830.0 23039800.0 14824480.0 False True 16507683.380744493 15126343.261133209 14474166.17940465 14386489.16867984 13866264.4515439 15348595.717518669 15296724.69921085 12245170.076374307 17361950.0075028 13878368.99452412 1.1894541345065692 1.089922257226443 1.0429299138188075 1.036612383944843 0.9991278122821928 1.1059365638407974 1.1021990195855407 0.8823205436608429 1.251007954490414 1.0 23.72633469453601 4.6999075282879605 2.0347301409355376 1.0417482943904615 1.2247773007141973 0.16685394235551543 0.08978236662006152 1.0509367840860893 5.065441970473279 0.0221282868655676 0.34611396663448535 50108.05302041858 -4.6999075282879605 0.18302900632373587 HLNRPTLDDS(ph)SEEEHAIEITTQEITQLFHR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLNRPTLDDSSEEEHAIEITTQEITQLFHR 30 1 H3BU86;O14662;F8W9Z6;B7ZBM8;O14662-6;O14662-2;O14662-5;B7ZBM4;B7ZBM5;Q96NX8;O14662-4 H3BU86;Q96NX8 STX16-NPEPL1;STX16 Syntaxin-16 1 HLNRPT(0.002)LDDS(0.499)S(0.499)EEEHAIEITTQEITQLFHR;HLNRPT(0.003)LDDS(0.498)S(0.498)EEEHAIEITTQEITQLFHR;HLNRPTLDDS(0.5)S(0.5)EEEHAIEITTQEITQLFHR 311.82 1.4527999999999996e-92 213961000.0 51140.1 56819.9 48477.5 48683.5 62820.3 53384.4 38315.1 23685.7 59262.0 35219.3 True False 50864.76738379922 58711.11602314514 55302.71062601637 54846.82610836832 70820.09283991001 49694.06208136048 36461.65223510412 25453.24720754758 44657.67417011571 32971.57412124028 1.5426854416099034 1.780658569932318 1.6772845124913336 1.6634579200462258 2.147913611266977 1.507178938397957 1.1058511219704106 0.7719754936161998 1.3544295460660838 1.0 15.008935145013801 2.3146497864404822 3.3791335772179685 1.0034596078325257 1.7579867905219653 0.730162527112134 0.20085168853913385 0.11320913222608596 2.5937833992277617 0.07477421922996431 0.05901113366254039 206.3715311789719 -2.3146497864404822 0.7545271826894395 HLNRPTLDDSSEEEHAIEITTQEITQLFHR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLNRPTLDDSSEEEHAIEITTQEITQLFHR 30 1 H3BU86;O14662;F8W9Z6;B7ZBM8;O14662-6;O14662-2;O14662-5;B7ZBM4;B7ZBM5;Q96NX8;O14662-4 H3BU86;Q96NX8 STX16-NPEPL1;STX16 Syntaxin-16 0 ;;; 341.88 1.9242999999999997e-106 1200617000.0 215692.0 305156.0 266256.0 290013.0 331216.0 331968.0 253722.0 136160.0 290812.0 220453.0 False True 214530.73823763395 315312.93298930227 303742.5304613606 326728.6160642972 373394.39432896086 309019.8335286167 241448.4975478359 146320.9506064706 219145.27928115282 206383.50080069102 1.0394762052457425 1.527801068234649 1.4717384349182605 1.5831140318713077 1.8092259937462531 1.4973088077764694 1.1699021317649219 0.708976008444473 1.061835265081515 1.0 17.654968114459283 2.0643724479028176 3.605679492650233 0.8976283737036561 1.5070510635086458 0.6201482198264519 0.19865308927654998 0.14099362722675948 3.6869086991387037 0.08629794917090584 0.057548230768693275 115.9771541733871 -2.0643724479028176 0.6094226898049897 HLNSSQPSGFGPANS(ph)LEDVVR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLNSSQPSGFGPANSLEDVVR 21 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 HLNSSQPSGFGPANS(1)LEDVVR;HLNSSQPSGFGPANS(1)LEDVVR;HLNSSQPSGFGPANS(1)LEDVVR;HLNSSQPSGFGPANS(1)LEDVVR 250.95 2.1863000000000004e-31 2189130000.0 1714610.0 1743900.0 1787420.0 1767240.0 1782600.0 2055590.0 1967920.0 1737750.0 1903740.0 2439230.0 True False 1705378.7302710775 1801944.657290187 2039073.1994668473 1990972.4028008017 2009603.5437020122 1913491.9016383744 1872724.1914155562 1867429.7291157036 1434588.7858090515 2283556.2530701314 0.7468082855319539 0.7890958039100456 0.8929375822143254 0.8718735963364315 0.8800324235499769 0.8379438426646055 0.8200911139796836 0.8177725977212229 0.6282257263775815 1.0 21.122850898793324 -0.17473741395078168 7.76821300147417 1.0000000000000002 0.8166887314132545 0.3714943899250557 0.07382354726628768 0.0 0.0 0.07119176275275398 0.016780059527386593 0.6687481383500646 0.17473741395078168 -0.18331126858674573 HLPDNECIEK ddPTM_BT-474_Trastuzumab_2h_R1 5 HLPDNECIEK 10 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ;;;; 178.53 2.2061e-06 3158470000.0 6239030.0 6107210.0 5449950.0 5385230.0 5209660.0 6845600.0 6618030.0 5952380.0 8778310.0 6683650.0 False True 6205439.755701393 6310484.792963587 6217255.588185402 6066999.565839928 5873079.320925967 6372379.7848090725 6297890.605570287 6396576.821173201 6615013.12382755 6257093.734839355 0.9917447330458942 1.0085328844966717 0.9936331229254031 0.969619414850542 0.9386273515809418 1.0184248558284827 1.0065200990203769 1.0222919924560516 1.0572021779049445 1.0 22.577061285919356 2.5213821665498424 24.728442388464757 1.0213736363476418 0.9817654936195513 0.45359531162087896 0.02219759729616728 397.98139215565357 222350.1516675943 0.007576038259779235 0.007142428980531094 332.18664358931744 -2.5213821665498424 -0.039608142728090434 HLPHFKPWLHPEQSPLPS(ph)LALSELSVQHADSLENIDESAVAESR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLPHFKPWLHPEQSPLPSLALSELSVQHADSLENIDESAVAESR 44 1 Q9Y365;F5H8H3;F5GY11 Q9Y365 STARD10 PCTP-like protein 1 HLPHFKPWLHPEQS(0.048)PLPS(0.314)LALS(0.314)ELS(0.281)VQHADS(0.042)LENIDESAVAESR 80.99 0.0001312 348180000.0 58266.0 88233.0 62738.0 80733.0 64559.0 76252.0 74411.0 40604.0 92440.0 50712.0 True False 57952.3023299612 91169.78206702511 71570.9650715283 90953.78952225894 72780.20597882778 70980.87871790066 70811.45565237556 43634.076662934225 69659.4006325385 47475.51674327248 1.2206776525117726 1.920353654285276 1.5075341982806385 1.915804097806846 1.5330050302009848 1.4951049211688467 1.4915362803799266 0.919085871121506 1.467269982741359 1.0 15.53489608290262 1.9215538980245208 5.176861473593361 1.131089190872415 1.6120717500360404 0.44651561647242355 0.23400456126486963 0.18622292625422052 8.621134619487442 0.09911106680021715 0.0593689040143368 83.47451377174048 -1.9215538980245208 0.4809825591636254 HLPHFKPWLHPEQSPLPSLALS(ph)ELSVQHADSLENIDESAVAESR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLPHFKPWLHPEQSPLPSLALSELSVQHADSLENIDESAVAESR 44 1 Q9Y365;F5H8H3;F5GY11 Q9Y365 STARD10 PCTP-like protein 1 HLPHFKPWLHPEQS(0.022)PLPS(0.13)LALS(0.708)ELS(0.117)VQHADS(0.024)LENIDESAVAESR 80.502 0.00014791 241900000.0 138500.0 164270.0 147360.0 158970.0 143530.0 170330.0 157850.0 79998.0 182550.0 120110.0 True False 137754.33138879648 169737.62764668817 168107.00712391877 179095.58570043888 161807.69473103894 158555.48801369188 150214.19245444203 85967.85698161299 137562.9985446767 112444.47696865544 1.2250875730178932 1.509523919916525 1.4950223581971003 1.592746842962886 1.4390008215000527 1.4100780428538982 1.3358965820643653 0.7645360563647519 1.2233859968331142 1.0 16.778853275209144 1.9182790137332077 5.75785102998542 0.9817181966957017 1.4507948488418105 0.6860503563069711 0.13593345313641955 0.11725873224755565 6.340785183082876 0.05836381317619476 0.035401898643182536 82.84742484270373 -1.9182790137332077 0.46907665214610883 HLPHFKPWLHPEQSPLPSLALSELSVQHADS(ph)LENIDESAVAESR ddPTM_BT-474_Trastuzumab_2h_R1 11 HLPHFKPWLHPEQSPLPSLALSELSVQHADSLENIDESAVAESR 44 1 Q9Y365;F5H8H3;F5GY11 Q9Y365 STARD10 PCTP-like protein 1 HLPHFKPWLHPEQSPLPSLALSELSVQHADS(1)LENIDESAVAESR;HLPHFKPWLHPEQSPLPSLALS(0.001)ELS(0.009)VQHADS(0.989)LENIDES(0.001)AVAESR;HLPHFKPWLHPEQSPLPSLALS(0.001)ELS(0.01)VQHADS(0.989)LENIDESAVAESR;HLPHFKPWLHPEQSPLPS(0.001)LALS(0.021)ELS(0.021)VQHADS(0.957)LENIDESAVAESR;HLPHFKPWLHPEQSPLPSLALSELS(0.002)VQHADS(0.998)LENIDESAVAESR;HLPHFKPWLHPEQSPLPS(0.001)LALS(0.009)ELS(0.044)VQHADS(0.946)LENIDESAVAESR;HLPHFKPWLHPEQS(0.006)PLPS(0.006)LALS(0.001)ELS(0.038)VQHADS(0.949)LENIDESAVAESR;HLPHFKPWLHPEQSPLPS(0.001)LALS(0.014)ELS(0.214)VQHADS(0.766)LENIDES(0.004)AVAESR;HLPHFKPWLHPEQS(0.001)PLPS(0.028)LALS(0.007)ELS(0.034)VQHADS(0.925)LENIDES(0.005)AVAESR;HLPHFKPWLHPEQSPLPSLALSELSVQHADS(1)LENIDESAVAESR;HLPHFKPWLHPEQS(0.001)PLPS(0.004)LALS(0.024)ELS(0.145)VQHADS(0.826)LENIDESAVAESR 353.33 8.779199999999995e-155 86886680000.0 6520777.0 7880589.0 6576841.0 7717494.0 7099305.0 8246057.0 7386303.0 2837157.0 8899738.0 5564693.0 True False 6485669.86115843 8142889.640948342 7502803.045873233 8694527.94910751 8003359.410872551 7676026.48872024 7028999.3054724205 3048880.0621313304 6706516.820279387 5209549.528566628 1.2449579038636989 1.563069819433851 1.4402018840077289 1.6689596483210227 1.5362862694722514 1.4734530205785847 1.3492528033237456 0.585248310897662 1.2873506209134054 1.0 22.312727196914253 1.9350383072925499 7.1508796521373865 0.9213175636594704 1.4926989817105036 0.6112875354194909 0.18861147155836241 0.15316249343417007 14.568414554781558 0.07684126369964418 0.04790589144194333 86.10697001774548 -1.9350383072925499 0.5713814180510333 HLPNDPMFK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLPNDPMFK 9 0 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 CS Citrate synthase, mitochondrial;Citrate synthase 0 ; 118.03 0.0010550000000000002 680680000.0 554280.0 645450.0 665620.0 591750.0 689890.0 1098920.0 644840.0 514620.0 751610.0 703890.0 False True 551295.8180662971 666933.4130672351 759333.5103272451 666665.4893265062 777743.402201606 1022954.2469794302 613646.625671981 553023.5575874106 566385.7865580076 658967.1375694518 0.8366059347051935 1.012089033039138 1.1523086160684533 1.011682451700777 1.180246112226857 1.5523600323265225 0.9312249286593685 0.8392278249674092 0.8595053596254841 1.0 19.32984699483291 2.024294071869723 24.999991484955743 0.8825918684875979 1.1281578178311265 0.2653764134758164 0.1764888214709156 289.42650398439656 297835.1397184591 0.06907952938581152 0.051016496340523555 105.75333496312354 -2.024294071869723 0.2455659493435286 HLPNLLDETQIFSYFSQFGTVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLPNLLDETQIFSYFSQFGTVTR 23 0 Q9BYG3 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 0 ; 215.79 2.6497e-32 262300000.0 122934.0 163362.0 170044.0 158189.0 146470.0 165351.0 161778.0 132718.0 179595.0 155114.0 False True 122272.13700325128 168799.40541558567 193984.71715105596 178215.71118051623 165122.08630429365 153920.67456438663 153952.1800880247 142622.09108834856 135336.2186997053 145214.49172022336 0.8420105703969695 1.1624143252920105 1.3358495757076054 1.2272584441770074 1.1370909634998767 1.0599539532248405 1.0601709117615876 0.9821477829026222 0.931974605953585 1.0 17.147825909104146 2.2317343000854533 1.378741204214534 0.9693076825598224 1.1563237053591005 0.2619691422840634 0.11908277114782448 0.5720060602941441 2.1192748628839877 0.07523723997852592 0.04362026365021187 170.50389327157586 -2.2317343000854533 0.1870160227992781 HLPS(ph)PPLTQEVDLHSIAGPPVPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLPSPPLTQEVDLHSIAGPPVPPR 24 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 HLPS(1)PPLTQEVDLHSIAGPPVPPR;HLPS(1)PPLTQEVDLHSIAGPPVPPR;HLPS(1)PPLTQEVDLHSIAGPPVPPR;HLPS(1)PPLTQEVDLHSIAGPPVPPR 311.55 2.960499999999999e-73 1382620000.0 433881.0 535860.0 474540.0 515610.0 508560.0 464123.0 479371.0 370751.0 529770.0 455477.0 True False 431545.0329047108 553695.7761657893 541351.1072243789 580886.173133316 573322.1015287202 432039.269438024 456181.9933549463 398418.322255431 399215.2820543049 426408.06790652097 1.0120470633292895 1.298511491314402 1.269561126932186 1.3622776322812455 1.3445385879856437 1.013206132705579 1.0698249580375025 0.9343592493723031 0.9362282566891361 1.0 18.70187520948187 2.676346085903484 6.332385406881151 0.9870952715391217 1.2659108296334431 0.6540186411390282 0.09690118812166469 0.1438525175307792 11.6624877890366 0.0322110588715535 0.030444689461175622 474.6200556399203 -2.676346085903484 0.27881555809432146 HLPS(ph)PPTLDSIITEYLR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLPSPPTLDSIITEYLR 17 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 HLPS(0.849)PPT(0.151)LDSIITEYLR;HLPS(0.997)PPT(0.003)LDSIITEYLR;HLPS(0.856)PPT(0.144)LDSIITEYLR;HLPS(0.95)PPT(0.05)LDSIITEYLR 243.41 1.2030000000000002e-20 2048872000.0 214209.0 248737.0 215369.0 251083.0 240219.0 256281.0 242905.0 228889.0 255961.0 259687.0 True False 213055.72254485727 257016.0606803082 245691.08317909387 282870.0820558801 270809.4657604362 238564.89769058282 231154.7571627885 245969.8594547914 192882.841251679 243113.55333077384 0.87636299838446 1.0571852418718055 1.0106021643508007 1.1635306965836438 1.1139217129206287 0.9812899956507063 0.950809833494908 1.0117488559764964 0.7933858010344974 1.0 17.89127079881146 2.5254222236470745 6.446004419082499 0.9499803693546821 1.0499403919457868 0.2334711229809705 0.08920685619548076 0.34647872014481573 35.59960794206811 0.02960701680443435 0.027463772446780086 335.29125287926536 -2.5254222236470745 0.0999600225911047 HLPSTEPDPHVVR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLPSTEPDPHVVR 13 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;M0R3F1;M0QYZ0;M0QYI8;M0QYM5 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;; 117.23 0.00030222 2788880000.0 1833680.0 2056880.0 1965300.0 1908260.0 1929890.0 2087900.0 1807130.0 1661420.0 2372130.0 1878130.0 False True 1823807.6706210014 2125342.007389782 2241997.157306172 2149845.5203416934 2175650.0521457843 1943568.3873879337 1719712.217993004 1785403.596919814 1787550.3464134976 1758266.1354520107 1.0372762313096255 1.2087715076440373 1.2751182042926652 1.2227076874167382 1.2373838114026314 1.1053891946160277 0.9780727634562015 1.0154342172215167 1.0166551640681851 1.0 20.745722026174874 2.470370440596761 3.608322169551505 1.0049148055223338 1.201956101174325 0.6993961207064101 0.05966345335741628 0.12884309304599414 3.6386779781125607 0.02184425455743194 0.01885315277397384 295.37275964351824 -2.470370440596761 0.19704129565199113 HLQDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLQDIK 6 0 Q99733;Q99733-2;C9JZI7;H0YCI4 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 0 ; 143.37 0.011408 573480000.0 1300980.0 1188230.0 1074940.0 1036290.0 1006630.0 1261380.0 1344850.0 1199750.0 1755400.0 1358040.0 False True 1293975.6682324677 1227779.5172497958 1226282.2084540266 1167484.2077467921 1134818.3637365398 1174183.7695691346 1279794.467674097 1289281.4372070585 1322805.1911548905 1271368.7245234617 1.0177815792326335 0.9657147400019581 0.9645370259628382 0.9182892305175999 0.8925957842496841 0.9235587968464819 1.0066273009459106 1.0140893136177398 1.0404575522736006 1.0 20.277951073226802 2.15164684986082 5.873930508658159 1.0171847785796 0.9450620715087695 0.5063389827532574 0.03303959348368496 0.18508926297321993 9.9023813476753 0.013782177389931906 0.010144821916525989 141.790407239565 -2.15164684986082 -0.07212270707083046 HLQELVGQETLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLQELVGQETLPR 13 0 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 200.16 1.1208e-07 450050000.0 286000.0 323240.0 298470.0 306690.0 264590.0 287200.0 285530.0 256670.0 323440.0 289300.0 False True 284460.2077775871 333998.8479972936 340491.9816522529 345516.92255436553 298283.968152202 267346.5399960796 271717.82306947594 275824.01874385116 243732.54587395347 270836.62631780916 1.0503018430151008 1.2332115214187007 1.257185877262803 1.275739279623591 1.101342799190628 0.9871136841084626 1.0032536099849094 1.0184147635194274 0.8999246120720363 1.0 18.04706332795085 2.9548585088407537 3.3776110178234613 0.9883056237303762 1.2095727370867297 0.71973016927537 0.0651808422353153 0.13123269006237906 3.0283043104412792 0.020689378706413804 0.023156092082534906 901.2774576882206 -2.9548585088407537 0.22126711335635352 HLQGGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 HLQGGEK 7 0 Q8N163-2;Q8N163;E5RHH8;E5RGU7;E5RFJ3;H0YC58 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 ;; 173.68 0.00085451 466400000.0 1522440.0 1425060.0 1287910.0 1249590.0 1248260.0 956220.0 1578780.0 1451340.0 2115470.0 1659950.0 False True 1514243.3521989863 1472492.2606330402 1469236.5332856006 1407787.9658766496 1407218.5119833248 890118.7620997612 1502408.3798747153 1559646.3605551922 1594140.7643456978 1554010.5698453074 0.9744099439103046 0.9475432723598645 0.9454482239666198 0.905906300249159 0.9055398587947862 0.5727881002690781 0.9667941834039593 1.0036266102813225 1.0258236303401624 1.0 20.56756488581854 2.0157109350019025 24.999934086445602 1.0039674977455109 0.8749553211917077 0.2505979833672928 0.10668712958854257 355.50852756555025 565698.5680895138 0.042161170663755444 0.031129171023775156 103.6838070042119 -2.0157109350019025 -0.12901217655380315 HLQIEIEGLIDQMIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLQIEIEGLIDQMIDK 16 0 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ; 200.94 3.4238e-11 275480000.0 320960.0 320570.0 295540.0 290310.0 277740.0 364810.0 334130.0 309540.0 451450.0 383900.0 False True 319231.9870220084 331239.9786613428 337149.46312026953 327063.21623384545 313108.54270604544 339591.5433703689 317966.8553994465 332639.4466122712 340196.1966200725 359399.17332667386 0.8882379557724922 0.9216492503177354 0.9380919271448057 0.9100277365873716 0.8711999524312962 0.9448868238261057 0.8847178262995956 0.9255431600837891 0.9465692240500871 1.0 18.455227564868196 0.9487343795641114 1.7611087802744472 0.9996171443564091 0.9098919022321611 0.6178746565383675 0.022051147391390483 0.2581381051919484 1.6574108968985914 0.019951290674886074 0.005693913265888527 8.886574365896644 -0.9487343795641114 -0.08972524212424804 HLQLAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLQLAIR 7 0 A0A0U1RR32;A0A0U1RRH7;P20671;A0A3B3IS11;Q7L7L0;P04908;Q99878;Q96KK5;Q6FI13;P0C0S8;Q16777;Q9BTM1;Q9BTM1-2;Q96QV6;H0YFX9;P16104;Q71UI9;P0C0S5;C9J0D1;A0A494C189;Q71UI9-4;Q71UI9-2;Q71UI9-3;C9J386 A0A0U1RR32;Q7L7L0;Q99878;P16104;Q71UI9 HIST1H2AD;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG;HIST2H2AC;H2AFJ;HIST1H2AA;H2AFX;H2AFV;H2AFZ Histone H2A type 1-D;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-C;Histone H2A.J;Histone H2A type 1-A;Histone H2A;Histone H2AX;Histone H2A.V;Histone H2A.Z 0 ; 164.1 0.0012102 2739600000.0 878090.0 1678690.0 3154800.0 854890.0 233770.0 529730.0 1116120.0 365930.0 4347600.0 728330.0 False True 873362.4610049705 1734564.1818604637 3598968.417986824 963118.986346154 263539.2238366541 493111.0119502901 1062129.0116075496 393237.5547548893 3276192.234855307 681847.3558453161 1.2808768025832185 2.5439186160809384 5.278261163783535 1.4125140738459463 0.3865076568492855 0.7231985395601612 1.557722564298547 0.5767237364547311 4.804876350651338 1.0 19.379089275837007 3.5343392447588093 24.99995422544897 1.351982242008134 3.0453233795585986 0.17790373595936249 1.4955909797324438 424.8333452534891 185618.7959622787 0.39108417596584577 0.6058630030625384 3422.4668067122675 -3.5343392447588093 1.6933411375504646 HLQQGSES(ph)PMMIGELR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLQQGSESPMMIGELR 16 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 HLQQGS(0.009)ES(0.991)PMMIGELR 94.671 0.002585 206340000.0 78973.0 77359.0 64661.0 70683.0 66066.0 89306.0 81398.0 69869.0 104370.0 82463.0 True False 78547.81814272517 79933.847550497 73764.70675651258 79631.46055270873 74479.1134961389 83132.48642371134 77460.46776944354 75082.97956759311 78649.41198634834 77200.14073987368 1.0174569293518843 1.0354106454266006 0.9554996409276401 1.0314937225442036 0.9647535973683871 1.0768437159179118 1.0033721056344578 0.9725756824794614 1.0187729093831317 1.0 16.236315857153333 0.538972019090482 0.0029688733615354053 0.37523772957549173 1.6277618302117522 0.0029328674755225714 0.034896708342472604 180448.5647893468 237.35830196993354 50420.57115414511 49712.641523668884 3.4591709021479864 -0.538972019090482 1.2525241006362604 HLQTGENHTSVDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLQTGENHTSVDPR 14 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ;; 105.19 0.0005863999999999999 867580000.0 277652.0 532980.0 635880.0 717860.0 708750.0 650440.0 677630.0 442470.0 529840.0 591120.0 False True 276157.15248203726 550719.9171067859 725406.3768319595 808741.0023961554 799005.1114096267 605476.6137710663 644850.4481020175 475489.3582171341 399268.03149225673 553394.2155167065 0.49902428456753595 0.9951674622991432 1.3108311516314721 1.461419327704809 1.4438262797228416 1.0941144608924585 1.1652641643532866 0.8592235785716836 0.7214893475521036 1.0 19.077948038354002 1.710764384590875 4.60870462554572 0.8379641174566754 1.162979843021964 0.18249572780720213 0.2652705655387187 0.27526621308631716 13.788377348598088 0.15128833822927235 0.07449103155814098 51.37648459288957 -1.710764384590875 0.32501572556528857 HLS(ph)NVS(ph)STGSIDMVDSPQLATLADEVSASLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLSNVSSTGSIDMVDSPQLATLADEVSASLAK 32 0 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 2 HLS(0.967)NVS(0.733)S(0.188)T(0.061)GS(0.051)IDMVDSPQLATLADEVSASLAK 163.55 5.757999999999998e-14 30129000.0 28076.0 26824.0 30035.0 25311.0 31789.0 39124.0 37339.0 28497.0 41669.0 33503.0 True False 27924.841935536835 27716.820624549568 34263.66693110002 28515.370004804718 35837.140721835145 36419.44996798963 35532.76992116824 30623.590844833932 31400.233285993596 31364.80985663861 0.8903239669927832 0.8836916516069069 1.0924238689063133 0.9091516937339001 1.142590721437131 1.1611564085500479 1.1328865082740953 0.97636781427362 1.001129400417758 1.0 14.936859196152632 4.24614972801674 24.999999963188117 1.0533422474779692 0.8870077150599848 0.42141285121744176 0.07730032774514084 165.62219876522948 545578.1514293405 0.019842078162727816 0.052169395633410665 17625.836126419123 -4.24614972801674 -0.16633453241798446 HLS(ph)QDHTVPGRPAASELHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLSQDHTVPGRPAASELHSR 20 1 Q8TEK3;Q8TEK3-1 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific 1 HLS(0.998)QDHT(0.002)VPGRPAASELHSR;HLS(0.997)QDHT(0.003)VPGRPAASELHSR 153.82 2.4307e-08 722260000.0 99327.0 114771.0 110227.0 131224.0 124129.0 123091.0 113239.0 57453.0 138332.0 100023.0 True False 98792.23446826707 118591.08335446529 125746.00348974056 147836.94494530006 139936.09237977525 114582.00889504676 107761.19695501137 61740.43460042265 104241.93215383304 93639.4465060014 1.0550279626218788 1.2664650185311028 1.3428742712792672 1.5787891797910734 1.4944139206419451 1.2236510698266796 1.1508098453796916 0.659342156582116 1.1132267013896981 1.0 16.514828786389305 2.0883750678074335 2.94686104062365 0.8899053012597389 1.3474665491470934 0.5071896626793495 0.17444440500277866 0.19133202938306754 3.2893413670475233 0.08164173823419366 0.052400726540010045 122.56742659151264 -2.0883750678074335 0.4575612478873545 HLSDAIVEVEEALIQIHDPELR ddPTM_BT-474_Trastuzumab_2h_R1 4 HLSDAIVEVEEALIQIHDPELR 22 0 H7C0I1;B8ZZW5;Q8NBF6-2;Q8NBF6 H7C0I1 AVL9 Late secretory pathway protein AVL9 homolog 0 ;;; 198.9 1.0586999999999999e-22 144321000.0 22540.7 43781.8 40359.4 50967.0 43740.9 42906.9 44657.5 28404.3 36082.8 36577.299999999996 False True 22419.343375707194 45239.05074634304 46041.65270980651 57419.416974235726 49311.0443423737 39940.8469949784 42497.24611678325 30523.973100112853 27190.67742474859 34242.90539859796 0.6547149873744396 1.3211218563304299 1.3445603453873876 1.67682666835235 1.4400368125419838 1.1663977261875018 1.2410525807346726 0.8913955385737398 0.7940528733832813 1.0 15.06351749444044 1.7815335440101379 2.945809360410314 0.871465864917371 1.2958233991240637 0.3100693689677826 0.2489998493302758 0.2847085375663716 4.795677504420404 0.1466947817757639 0.07098413735452362 60.46910546311104 -1.7815335440101379 0.42435753420669275 HLSNVSS(ph)TGSIDMVDSPQLATLADEVSASLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLSNVSSTGSIDMVDSPQLATLADEVSASLAK 32 0 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 1 HLS(0.014)NVS(0.059)S(0.331)T(0.331)GS(0.265)IDMVDSPQLATLADEVSASLAK;HLS(0.034)NVS(0.102)S(0.561)T(0.152)GS(0.152)IDMVDSPQLATLADEVSASLAK 185.62 7.3442e-20 231560000.0 44734.0 84223.0 85535.0 93457.0 96537.0 114124.0 120890.0 89909.0 86756.0 111335.0 True False 44493.157114414615 87026.31164112134 97577.5845164521 105288.64661763789 108830.41473037207 106234.87649899926 115042.08885535313 96618.46612865127 65376.14627084067 104229.5049813109 0.4268767958016548 0.8349489106441192 0.9361800627753961 1.0101616297277523 1.0441421049623725 1.0192399601058062 1.1037382253324621 0.926978077330173 0.6272326274845408 1.0 16.669404203731002 4.797695647073569 1.9013201329301181 0.9698754786008398 0.20194034723996732 0.6317333709612041 0.12177268373279278 0.6109082045397959 2.040854210864255 0.031866966238594266 0.8704636816898819 62761.837063991916 -4.797695647073569 -0.7679351313608724 HLSPDGQYVPR ddPTM_BT-474_Trastuzumab_2h_R1 7 HLSPDGQYVPR 11 0 O95994;B5MC07;C9J3E2;H7C3Z9 O95994 AGR2 Anterior gradient protein 2 homolog 0 ;;;;;; 217.02 1.1657e-11 22579070000.0 3473113.0 7216560.0 7957180.0 8337240.0 8459270.0 7576953.0 7860296.0 7164548.0 6280811.0 6995028.0 False True 3454414.145507126 7456758.83709736 9077481.778951565 9392733.729163522 9536507.892478468 7053176.073338843 7480063.453233317 7699202.952597587 4732989.287605529 6548599.324295231 0.5275042760199555 1.1386799631232387 1.3861715046871486 1.434311867931297 1.4562668167982318 1.0770510950596164 1.1422386807942828 1.1757022488814715 0.7227483394878338 1.0 22.642754931854263 1.2571177290457642 23.29929367622964 0.8613744873523256 1.186974294046989 0.18099198544383877 0.25753691711699217 151.88709458866734 190704.2377235699 0.17638693064036012 0.06407865694754616 18.07664083249731 -1.2571177290457642 0.3255998066946634 HLSPNDNENDTSYVIES(ph)DEDLEMEMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLSPNDNENDTSYVIESDEDLEMEMLK 27 0 Q14191 Q14191 WRN Werner syndrome ATP-dependent helicase 1 HLSPNDNENDTS(0.001)YVIES(0.998)DEDLEMEMLK 149.55 6.914799999999999e-08 37257000.0 13826.0 20840.0 17798.0 21155.0 21099.0 25295.0 26652.0 19243.0 25086.0 19856.0 True False 13751.562352213006 21533.64680195398 20303.80369701077 23833.22083092897 23785.832586429235 23546.41618802521 25362.74093947283 20679.010373974088 18903.891435178062 18588.77308042314 0.7397778375537616 1.1584221674442972 1.0922616360513768 1.2821298494427826 1.279580555613937 1.2667009321246294 1.364411778536569 1.1124462214105078 1.016952079268039 1.0 14.18214393037688 5.128079590039157 1.592137902531296 1.199598246593346 4.0821412294881237e-10 0.54667877698183 0.117321103508277 2.3741046202520897 2.50735830734169 0.031016004862021152 5.988793308965752 134301.10626049613 -5.128079590039157 -1.1995982461851318 HLSVNDLPVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLSVNDLPVGR 11 0 P30048-2;P30048 P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial 0 ;; 206.36 2.6654e-08 1592470000.0 240654.0 495190.0 601550.0 576670.0 670490.0 803170.0 548830.0 443464.0 484485.0 595100.0 False True 239358.34560317296 511672.09980132314 686243.0112336676 649676.3628726924 755872.9271944142 747648.7483588143 522280.99616579927 476557.5355445638 365090.1635163938 557120.2085092573 0.429635008652169 0.9184231553374375 1.2317682983891702 1.1661331844542078 1.356750151312909 1.341988204591202 0.9374655382961591 0.8553944521591432 0.6553166766168873 1.0 19.08762912248536 2.0085532304639218 24.329495345184593 0.8397347645511768 1.0952759656765558 0.1410173506875947 0.262141485421251 261.97718971692984 745184.4336861535 0.10456111655847025 0.07709037066835596 101.98897578982684 -2.0085532304639218 0.25554120112537904 HLT(ph)PEPDIVASTK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLTPEPDIVASTK 13 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 HLT(1)PEPDIVASTK 122.45 0.00086437 125420000.0 203740.0 173040.0 172830.0 150240.0 159580.0 206930.0 201320.0 184140.0 286730.0 196680.0 True False 202643.08647764195 178799.5317951112 197162.96173470994 169260.36859554585 179901.56709523592 192625.41616082456 191581.38248291548 197881.46184397396 216069.2334851553 184127.71401378047 1.1005572276994422 0.971062573349113 1.0707945992310202 0.9192552544419146 0.9770477413398602 1.0461511304398647 1.040480970010724 1.0746967826318863 1.1734748060196103 1.0 17.4903472649545 2.0193471179420777 1.76381504589165 1.0910925907963482 1.0069271833705336 0.19396514293442568 0.06252252304244901 0.5111885263030457 2.9783761904094943 0.03674634739710236 0.01868136346197839 104.55555650750847 -2.0193471179420777 -0.08416540742581469 HLTASEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLTASEAK 8 0 P39748;P39748-2 P39748 FEN1 Flap endonuclease 1 0 ; 110.12 0.003487 464680000.0 976050.0 954190.0 1061220.0 850920.0 702460.0 809610.0 1096970.0 815540.0 1427590.0 927780.0 False True 970795.0552493492 985949.637329965 1210630.5517104024 958646.3847532079 791914.1171933775 753643.5663169436 1043905.370267654 876399.7360282086 1075779.573225937 868568.2860875792 1.1176957192649126 1.13514349202309 1.3938231122432814 1.1037087124967235 0.9117465257228231 0.8676848768122677 1.2018690838573804 1.0090165045927544 1.2385664897710351 1.0 19.72827975126792 3.4860300776409487 24.89895061589655 1.0372973041021838 1.2143885330579234 0.27974453575618097 0.12733478186425773 520.2118804566887 1453921.0591729959 0.03500693537608742 0.04994150966803151 3062.175501377018 -3.4860300776409487 0.1770912289557396 HLTDAYFK ddPTM_BT-474_Trastuzumab_2h_R1 6 HLTDAYFK 8 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 ;;;;; 132.57 0.00095671 9650590000.0 10348250.0 12531170.0 12015460.0 11805310.0 10870650.0 12523680.0 13413650.0 11015810.0 17460260.0 12756060.0 False True 10292536.17179867 12948262.418197766 13707132.32774946 13299861.035574287 12254962.842109457 11657947.479171684 12764780.504380904 11837865.679349769 13157412.878497273 11941957.329787586 0.8618801665054807 1.084266344337045 1.147812870973746 1.1137086382313222 1.0262105703175743 0.9762174790302192 1.0689018685857214 0.991283535222641 1.101780262242095 1.0 23.50953598310465 3.057796652058506 24.999954244322403 1.024926300814474 1.0621877362233618 0.015511580128641844 0.07909661303327387 290.2050093795734 125525.83605608494 0.023011726084329567 0.02750427279862126 1142.343334768777 -3.057796652058506 0.03726143540888782 HLTGEFEK ddPTM_BT-474_Trastuzumab_2h_R1 8 HLTGEFEK 8 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 ;;;;;;; 208.37 5.5812e-05 26898270000.0 17687430.0 18386480.0 17186830.0 16620780.0 16180030.0 20563260.0 20741440.0 18557580.0 24754570.0 19124060.0 False True 17592202.842138194 18998462.871938128 19606586.27339561 18724969.043833043 18240460.91394868 19141770.236907344 19738097.30720471 19942440.853081856 18654137.91774359 17903546.11786851 0.9826099659988821 1.0611564182235855 1.0951230635716012 1.0458804596897548 1.0188183276018106 1.0691608305353002 1.1024685934986498 1.113882172938826 1.0419241973033464 1.0 24.093742031587965 2.491657992849388 23.47673834111992 1.0801496291321047 1.0450451849251516 0.027993253248395633 0.04107947837023029 610.6322704827409 986169.4255596735 0.01353624879880814 0.012313042067352419 310.2115708098115 -2.491657992849388 -0.03510444420695302 HLTGEFEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLTGEFEKK 9 1 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 ; 234.71 2.2806e-10 2161110000.0 3561100.0 3580500.0 3550300.0 3638900.0 3381200.0 4323400.0 4683200.0 3983500.0 6998300.0 4582500.0 False True 3541927.433275401 3699674.7780420394 4050151.3802391975 4099584.3668951793 3811775.778057469 4024533.5341888964 4456655.724438663 4280768.997803138 5273662.737415562 4290040.926724367 0.8256162339178001 0.8623868259613323 0.9440822242531995 0.9556049550383638 0.8885173459097804 0.9381107553353351 1.0388375776735337 0.9978387318257337 1.2292802860140157 1.0 22.032559980335858 2.0935536531845345 1.1394682811328656 1.094026803414295 0.8942688486810708 0.5891250531708738 0.06860851519708938 0.35151625925301444 0.852137952599809 0.04910333738113373 0.02452931028361132 124.03768530789348 -2.0935536531845345 -0.19975795473322422 HLTHENVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 HLTHENVQR 9 0 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ; 111.06 0.0021866 82877000.0 45548.0 61756.0 56979.0 59521.0 57369.0 57156.0 61847.0 36572.0 61432.0 55100.0 False True 45302.774628858555 63811.511127709695 65001.14792965366 67056.35249717436 64674.602097296505 53204.94025075189 58855.22433151646 39301.188348853095 46292.90674662597 51583.47082651664 0.8782420783824132 1.2370534612205115 1.2601158256345872 1.2999581343158444 1.2537853901845304 1.0314338953593973 1.1409706130371853 0.7618949969657761 0.8974368340260842 1.0 15.654621228592404 1.7554285487658319 24.99999999999023 0.8691224780722256 1.1687318233421606 0.4712677187806962 0.13073155290701258 4.987645774525706 7400.470798751163 0.060968960129723075 0.03381055658727812 56.94145348917539 -1.7554285487658319 0.299609345269935 HLTYENVER ddPTM_BT-474_Trastuzumab_2h_R1 6 HLTYENVER 9 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 ;;;;; 217.66 5.5798e-07 10791050000.0 3295800.0 4198540.0 4236490.0 3940970.0 4277620.0 4672300.0 3936410.0 3750940.0 4850070.0 3985520.0 False True 3278055.7789978 4338285.865828978 4832950.967768805 4439896.397923239 4822349.551559858 4349314.898411151 3745990.8097535 4030854.1896873885 3654835.2361083487 3731160.701424655 0.8785619385801722 1.16271750615633 1.2952942407233914 1.1899504613210494 1.2924529221479413 1.1656734315277464 1.003974663520438 1.0803217851614653 0.9795437743308233 1.0 21.831193067821292 2.264472074274673 8.709404420664743 1.0281542520648073 1.1772422795152337 0.2926773052299477 0.11107674481284271 0.30860923252654016 92.17695540161615 0.03989227967320242 0.032840722004504906 183.85357297173675 -2.264472074274673 0.14908802745042649 HLVSPEALDLLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 HLVSPEALDLLDK 13 0 P19784;H3BSA1;H3BV19 P19784 CSNK2A2 Casein kinase II subunit alpha 0 127.56 0.00017552 254470000.0 351830.0 292190.0 292190.0 277040.0 275240.0 386630.0 345940.0 339770.0 485060.0 321030.0 False True 349935.78637198784 301915.3675174154 333327.81223899196 312113.23559444904 310290.18252470647 359903.17812912347 329205.56058086536 365125.3627171008 365523.46247099864 300541.5905523892 1.1643506169273048 1.0045710045072338 1.1090904644057495 1.038502641251054 1.0324367484526835 1.1975153837032302 1.0953743872047539 1.2148912968950754 1.2162159047577212 1.0 18.19720512704301 2.740408466952632 24.99789055702113 1.1584600415861652 1.0666121402926667 0.1941527116606141 0.07368809689848398 215.92987140674492 2921130.524332053 0.021555167324029754 0.021852687821817485 550.0579766268067 -2.740408466952632 -0.09184790129349851 HLVYESDK ddPTM_BT-474_Trastuzumab_2h_R1 2 HLVYESDK 8 0 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ; 91.069 0.012749 904580000.0 1599660.0 1495030.0 1376720.0 1148270.0 1131910.0 1500830.0 1517920.0 1434900.0 2160160.0 1406540.0 False True 1591047.6082989331 1544791.1697852807 1570550.2093352436 1293640.8642652247 1276052.0291438047 1397081.1546738036 1444492.4105824914 1541979.5242745618 1627817.5126610168 1316773.4130005233 1.2082926284738866 1.1731640041737892 1.1927262457072554 0.9824323999050173 0.9690748738889502 1.0609882770113679 1.0969939067124204 1.1710287503154113 1.2362168742089947 1.0 20.32857568100473 3.7920289682000603 24.89312949525717 1.0828203943676964 1.1895713967463744 0.312854940645644 0.07905275414777532 460.3059512675194 214301.73162662974 0.02272282752346031 0.04096412080996167 6194.823942558191 -3.7920289682000603 0.10675100237867796 HLVYESDQNK ddPTM_BT-474_Trastuzumab_2h_R1 6 HLVYESDQNK 10 0 O43852;O43852-3;O43852-15;O43852-5;H0Y875;O43852-9;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;;; 222.3 4.9721e-09 3629140000.0 8017140.0 7356320.0 7021120.0 6082020.0 6160910.0 8567190.0 8392090.0 7593640.0 11025900.0 7827770.0 False True 7973976.6090279985 7601170.664210656 8009632.66733094 6852003.108396441 6945465.369925492 7974960.320296005 7986132.545802965 8160315.976522602 8308714.684490545 7328195.016908929 1.0881228720891034 1.0372500522532313 1.0929884710832172 0.9350192090393702 0.9477729992037147 1.0882571085915076 1.089781662111328 1.1135506025281334 1.1338009790022214 1.0 22.80502646607013 2.519180818637922 24.036347010735607 1.094887885934036 1.0202373960719533 0.23071487017237824 0.057962164968481084 420.57049112120694 240348.30148328101 0.01931084552070266 0.018204393431304523 330.5071191327605 -2.519180818637922 -0.07465048986208278 HLVYESDQNKDGK ddPTM_BT-474_Trastuzumab_2h_R1 5 HLVYESDQNKDGK 13 1 O43852;O43852-3;O43852-15;O43852-5;H0Y875;O43852-9;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;; 222.74 1.0185000000000002e-11 4265200000.0 6552060.0 6046610.0 5552040.0 5201150.0 5392620.0 6856480.0 7308670.0 6498440.0 9870940.0 6311800.0 False True 6516784.436962305 6247867.758597071 6333718.972803221 5859615.056714075 6079338.192437087 6382507.6760178255 6955121.710269288 6983386.591209694 7438379.100819438 5908975.520196147 1.1028619791516723 1.0573521141258129 1.0718810648572419 0.9916465276741518 1.028831169067914 1.0801377758637185 1.1770435816661522 1.181826962616674 1.2588271986228372 1.0 22.49447659142721 2.3332319439259126 3.905608744905607 1.1715205094115138 1.049262392262699 0.3400686473884481 0.06670730546330628 0.20835735315199877 6.01916671954896 0.023202065826158025 0.018777277065705967 215.393177928872 -2.3332319439259126 -0.12225811714881485 HLYISS(ph)SNPDLITR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLYISSSNPDLITR 14 0 Q16825 Q16825 PTPN21 Tyrosine-protein phosphatase non-receptor type 21 1 HLY(0.002)IS(0.063)S(0.467)S(0.467)NPDLITR 52.5 0.095836 0.0 26572.0 27787.0 25179.0 25682.0 25541.0 27919.0 30518.0 25960.0 33170.0 27282.0 True False 26428.939304426745 28711.873497403783 28723.984340208655 28933.3385667652 28793.494956632498 25989.025244256813 29041.72774991866 27897.267022208962 24995.697955228283 25540.839402704692 1.034771758583158 1.1241554376777174 1.1246296132760178 1.1328264553318186 1.127351161120545 1.0175478117412484 1.1370702149610334 1.0922611658274133 0.978656087261616 1.0 14.64051831971222 1.2624330934772265 7.247029527956322 0.988996180881596 1.101570198855131 0.5483703850681234 0.03970329679076734 0.10502723814320601 21.973590111656044 0.027849808084015507 0.009506571927373654 18.299241702061554 -1.2624330934772265 0.11257401797353495 HLYPNTPYAYTFWTYMMNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HLYPNTPYAYTFWTYMMNAR 20 0 P27695 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 124.35 2.7051e-05 222450000.0 203260.0 199330.0 213580.0 193420.0 224370.0 261210.0 277330.0 209920.0 377660.0 234590.0 False True 202165.6707443089 205964.57855247034 243650.20752936034 217906.95216820049 252942.1895548191 243153.16752220053 263914.488396518 225585.29635216144 284590.7533847303 219618.26535739627 0.9205321352270684 0.9378299123585802 1.1094259720741153 0.9922077829619004 1.1517356679927924 1.1071627723063229 1.201696443449438 1.0271700124079148 1.2958428249198715 1.0 17.744638520786765 4.445743542553509 0.7708777152617091 1.1280314933579998 0.8277761397942819 0.4016419919436027 0.08832230930872711 1.7601874278087628 1.057116720352703 0.03155613476350601 0.4236116593026277 27908.952887459178 -4.445743542553509 -0.3002553535637179 HLYTLDGGDIINALCFSPNR ddPTM_BT-474_Trastuzumab_2h_R1 3 HLYTLDGGDIINALCFSPNR 20 0 P63244;J3KPE3;H0YAF8;D6R9L0;H0Y8W2;D6RAC2;D6R9Z1;D6REE5;H0YAM7;H0Y8R5;D6RF23 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ;; 278.08 1.3187e-44 6998883000.0 2002203.0 2558539.0 2362356.0 2346587.0 1764967.0 2232441.0 2322918.0 2248066.0 2964954.0 2342311.0 False True 1991423.3615136645 2643698.423945515 2694955.19083355 2643664.673599016 1989725.0856709918 2078117.6082708486 2210549.5819315026 2415828.100367842 2234280.8150481107 2192822.706626661 0.9081552081231318 1.2056143052314798 1.22898909368708 1.2055989139522865 0.9073807379219885 0.9476906646355056 1.0080840440274863 1.1016978678063043 1.018906274682474 1.0 21.064357741750477 3.2495247460389933 24.998883962032004 1.0075154552942558 1.1485482856950382 0.3287062663165582 0.09666113980072005 266.5336247753186 607709.6911552276 0.028025796661755368 0.0375919075041113 1776.3344806957818 -3.2495247460389933 0.1410328304007824 HMAAASAECQNYAK ddPTM_BT-474_Trastuzumab_2h_R1 4 HMAAASAECQNYAK 14 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ;;; 160.38 2.5904e-07 376028000.0 320561.0 301356.0 302000.0 284728.0 278230.0 351352.0 352966.0 314831.0 385499.0 333201.0 False True 318835.13519367535 311386.4522864513 344518.974968943 320774.5356061801 313660.9413015879 327063.863233644 335891.68611893913 338325.28789942473 290497.936871949 311935.8269122719 1.0221177168063602 0.9982388216472001 1.1044546513915976 1.0283350225634518 1.0055303502851602 1.0484972709647316 1.076797395938122 1.0845990063032245 0.9312746783448121 1.0 18.250889735197347 1.2375744435349865 24.999906719421553 0.9656373327201183 1.0479019202792135 0.44167727404681 0.036126513859583584 24.030244571150856 609023.6954154621 0.02958978886487637 0.009006794172182728 17.281221769916602 -1.2375744435349865 0.08226458755909516 HMCDGDIVIFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 HMCDGDIVIFNR 12 0 P24928;P24928-2 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 ; 190.53 6.5247e-06 437710000.0 512220.0 650420.0 546640.0 604810.0 619070.0 621580.0 596450.0 545520.0 670880.0 585100.0 False True 509462.2644329915 672068.8365128073 623602.1605199442 681378.8839874342 697904.8949846313 578611.6376419341 567597.4348397336 586229.4724944312 505550.61333143065 547758.4170706884 0.9300856884272126 1.226943878118584 1.1384620319571794 1.2439405087215702 1.274110763494788 1.0563263285596651 1.03621855392956 1.0702336180053222 0.92294449081225 1.0 19.06318022284052 2.545539893438581 7.574564914429714 1.0232194070587546 1.1694971310365578 0.3707254633124001 0.09542123461022034 0.3238236747460217 32.10439717335941 0.030683770397729276 0.028799109741264588 351.188182491747 -2.545539893438581 0.14627772397780325 HMDFLSDFEMMLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 HMDFLSDFEMMLQR 14 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 0 ; 215.53 6.4676e-12 165969000.0 180934.0 190446.0 203427.0 221954.0 194876.0 195596.0 183681.0 172166.0 240093.0 202044.0 False True 179959.87144765732 196784.87998296184 232067.75338081832 250053.35364254378 219692.30347945323 182074.90890345833 174795.64830043918 185013.90116123378 180925.29723137227 189149.37894142876 0.9514166657844696 1.0403675713040403 1.2269020108846327 1.3219887638117718 1.1614751510629187 0.9625985024240493 0.9241143126066816 0.9781364453674704 0.9565207046616678 1.0 17.529166513845027 2.7359255482937233 23.487401643755405 0.9608678974850446 1.1497616103169592 0.4606317457024489 0.09500529413420662 96.57677567413104 860822.4349179253 0.033307713359918896 0.032759375863973754 544.40931599698 -2.7359255482937233 0.18889371283191458 HMDGGQIDGQEITATAVLAPWPRPPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HMDGGQIDGQEITATAVLAPWPRPPPR 27 1 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BV80;H3BPG5 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 0 179.79 1.1370999999999999e-17 373100000.0 135050.0 151330.0 124250.0 106020.0 166110.0 154840.0 163200.0 154150.0 182160.0 129260.0 False True 134322.9058054656 156366.92756908314 141743.31999963956 119442.12112952453 187263.1238888935 144136.27525415385 155305.3925154572 165653.45575783943 137269.10881894443 121010.51613494645 1.1100101883349844 1.292176354282371 1.1713305961076363 0.9870391842336008 1.5474946299713703 1.1911053671849348 1.2834040997087095 1.3689178515122506 1.134356857596302 1.0 16.884772901411825 4.75462754897048 22.72969942384875 1.2403483870101004 1.1100098654484323 0.02626173643212726 0.15992632526511652 2726.192813326233 3856479.062170669 0.03640945923307785 0.8132649932572004 56836.52915927974 -4.75462754897048 -0.13033852156166814 HMGIGK ddPTM_BT-474_Trastuzumab_2h_R1 7 HMGIGK 6 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 ;;;;;; 89.775 0.049783 8890560000.0 23395410.0 24410630.0 23620930.0 22641140.0 21661260.0 25647450.0 26685230.0 23984820.0 32841810.0 25873860.0 False True 23269451.71203439 25223123.06301254 26946551.62719589 25507506.0025516 24419693.06465313 23874502.149103288 25394363.47742191 25774689.060848154 24748385.983207576 24222568.103073973 0.9606517200412524 1.041306725021101 1.1124564295796626 1.0530471374467747 1.0081380702797627 0.9856305098415014 1.0483761824659388 1.064077473171691 1.0217077676444586 1.0 24.529848493453475 0.9942353413249938 23.81115642245222 0.999999992841925 1.0375322760541335 0.05938457574521605 0.04019857774722618 321.0268864296022 1326029.2065307514 0.04008348561179492 0.010020871383508436 9.868140888372588 -0.9942353413249938 0.03753228321220847 HMLPSGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 HMLPSGFR 8 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 ; 91.318 0.012572 1115550000.0 1194540.0 1512320.0 1669490.0 1317440.0 1027810.0 1268470.0 1364200.0 1039170.0 2000260.0 1284360.0 False True 1188108.7293658694 1562656.656983255 1904539.6805327823 1484227.768919834 1158695.5111928442 1180783.654557197 1298208.434249917 1116718.1421983396 1507322.725110789 1202391.0452040818 0.9881217380192745 1.2996243303841515 1.5839602998785847 1.2343968917931487 0.9636594648758208 0.9820296477314354 1.0796890407891986 0.92874788668174 1.2536044169016172 1.0 20.19747473927345 3.357590491890834 5.303967340263401 1.025767395065433 1.3089862319324952 0.35930057055375386 0.1582027762423231 0.20754046219232777 8.803989444224525 0.04442217279369574 0.06049119724213969 2278.1928887022204 -3.357590491890834 0.2832188368670623 HMMAFIEQEANEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HMMAFIEQEANEK 13 0 P36543;P36543-3;Q96A05 P36543 ATP6V1E1;ATP6V1E2 V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2 0 94.551 0.005103 110460000.0 113720.0 127480.0 113520.0 121860.0 119450.0 136430.0 125000.0 118630.0 164760.0 138980.0 False True 113107.7441554797 131723.09473671275 129502.62926647146 137287.46350541277 134661.24946438108 126998.91522167553 118953.27245362835 127482.77299093398 124157.10567088972 130110.17741323575 0.8693228032134983 1.012396550028168 0.9953305101964876 1.0551631412305407 1.0349786015331524 0.9760874802154891 0.9142503285951831 0.9798063112775797 0.9542459178774401 1.0 16.989374290676455 -0.002524457341072525 8.174627084772691 0.9999999986718976 0.9797109025316851 0.01480369361314271 0.052146050211663436 6937016.821952999 848603.4697891392 0.05098024912801163 0.012364526572110408 0.9942040836651139 0.002524457341072525 -0.02028909614021246 HMNLILCDCDEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 HMNLILCDCDEFR 13 0 P14678-2;P14678;P14678-3;J3QLE5;P63162;P63162-2;J3KRY3;S4R3P3 P14678-2;S4R3P3 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 ; 148.91 4.3499e-05 1156380000.0 518690.0 600170.0 594010.0 573910.0 433440.0 492340.0 567710.0 430370.0 747310.0 498100.0 False True 515897.43067187676 620146.2956395737 677641.4447725224 646566.9471556817 488636.01479984284 458305.6946436977 540247.6984371949 462486.3947745786 563145.4639409595 466310.83155513497 1.106338081299488 1.3298989722614878 1.4531968783838993 1.3865578566969956 1.0478761841543631 0.9828330453214215 1.158557043668667 0.9917985246711899 1.207661126083826 1.0 18.830932415693834 3.2329258369983607 24.9984592871736 1.0621064519511074 1.329362242008543 0.5753494791435942 0.10682814453807649 93.34705556986543 414130.08025908534 0.030608291845382336 0.0375637893672514 1709.7233264829797 -3.2329258369983607 0.2672557900574355 HMSEFMECNLNELVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HMSEFMECNLNELVK 15 0 P25786;P25786-2;F5GX11 P25786 PSMA1 Proteasome subunit alpha type-1 0 115.68 0.0014959 0.0 45912.0 68964.0 88973.0 97063.0 82774.0 90498.0 89332.0 89136.0 87499.0 86058.0 False True 45664.81489330272 71259.42505038164 101499.62503282056 109351.16584790638 93314.7782600642 84242.08626937754 85010.66987862025 95787.7809434367 65936.04387653052 80565.70476203944 0.5668021527047926 0.8844883224301826 1.2598366182311938 1.3572917430672056 1.158244423426577 1.0456320902075733 1.0551719261900525 1.1889398997545852 0.8184132947298183 1.0 16.29787822203653 4.548169092639195 3.2641840688599495 1.1247971252087392 0.5747335371489822 0.5811323235416861 0.14235526443407184 0.18068266060665564 3.4110598250606943 0.03559893413179204 0.1912065123877467 35332.070849996555 -4.548169092639195 -0.550063588059757 HNDDEQYAWESSAGGSFTVR ddPTM_BT-474_Trastuzumab_2h_R1 40 HNDDEQYAWESSAGGSFTVR 20 0 P08238;P07900;P07900-2;Q14568 P08238;P07900 HSP90AB1;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 295.21 1.3744e-54 10165125800.0 4599786.199999999 4984141.8 4829545.6 4867062.300000001 5006868.6 5231685.0 5426662.4 4424904.199999999 5818402.300000001 4991696.9 False True 4575021.462183487 5150035.946835659 5509503.641317116 5483231.888148855 5644463.6381747695 4870030.930011808 5164154.007848483 4755113.020612242 4384535.015761398 4673122.530235275 0.9790073837317402 1.102054549932029 1.178976927240924 1.1733550431584328 1.2078569739301468 1.04213636567467 1.1050756693059547 1.0175451188892406 0.9382452498074456 1.0 22.155955434783948 1.7100683776583743 1.6183026162774312 0.9664050717142552 1.1243572374195667 0.45019530778421013 0.0653568751993072 0.32634889050936916 1.6880884327957435 0.05251989031761105 0.02025709885592553 51.294213800225364 -1.7100683776583743 0.15795216570531156 HNDLDDVGK ddPTM_BT-474_Trastuzumab_2h_R1 6 HNDLDDVGK 9 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;; 130.98 0.00034591 12988330000.0 32008400.0 25917000.0 22546600.0 21812000.0 23158800.0 29160100.0 27367300.0 26272700.0 39341500.0 27328000.0 False True 31836070.33086759 26779631.677842643 25720965.30143963 24573396.963565275 26107935.90703812 27144330.922491953 26043439.145761456 28233302.284067407 29646314.474091426 25583903.64332213 1.244378917881728 1.0467375132110701 1.0053573395220818 0.9605022480601543 1.020482889203375 1.0609925405022045 1.0179618993585162 1.103557247466292 1.1587877630953187 1.0 24.608733074529102 -0.9347819341154402 8.054444596729878 1.0000000018063313 1.0621162096314725 0.05880148897710635 0.07858124052750891 0.0 0.0 0.07640067174529586 0.01800781102610206 0.11620319413439045 0.9347819341154402 0.062116207825141156 HNDLDDVGKDVYHHTFFEMLGSWSFGDYFK ddPTM_BT-474_Trastuzumab_2h_R1 1 HNDLDDVGKDVYHHTFFEMLGSWSFGDYFK 30 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 94.192 0.00028345 211940000.0 190880.0 234800.0 244400.0 284930.0 233170.0 262450.0 341780.0 130740.0 432460.0 222360.0 False True 189852.32328876178 242615.17606040277 278809.3956371181 321002.1087854689 262862.8173931328 244307.44924084685 325246.79567360913 140496.48268426827 325886.02766710904 208168.7944280262 0.9120114463380952 1.165473320470645 1.3393428943237489 1.5420279954422014 1.2627388178683856 1.1736026521752063 1.5624185967319053 0.6749161567193711 1.5654893355295059 1.0 17.667394291882307 1.7541554025997383 24.999999999547704 1.0515000670665038 1.2829253832008856 0.10109464932743828 0.26848043276834144 10.900176383551342 17495.572474313423 0.11979743353632848 0.06643444725254155 56.774772493350916 -1.7541554025997383 0.23142531613438178 HNEEANKK ddPTM_BT-474_Trastuzumab_2h_R1 2 HNEEANKK 8 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 0 ; 57.59 0.071612 13820100.0 77162.0 58303.0 45988.0 48432.0 46959.0 62342.0 56809.0 51915.0 91264.0 61897.0 False True 76746.56836550421 60243.580110092254 52462.710665138286 54563.48623415518 52938.950302200596 58032.44427728277 54060.93163854537 55789.160919028414 68773.21007494588 57946.68046731222 1.3244342513942111 1.0396381574277704 0.9053617953962446 0.9416153918417207 0.913580378984151 1.0014800469893859 0.9329426845950425 0.9627671588625191 1.1868360623994831 1.0 15.822438396941378 4.712993662118864 3.3529311686928747 0.973054916879723 1.3613275022637779 0.6417303960814096 0.0764423172519308 0.16704495597098226 3.1734303368207213 0.018145474874024934 0.16072600021716246 51640.88329992893 -4.712993662118864 0.38827258538405485 HNESVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 HNESVVK 7 0 O00487 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 0 ; 79.059 0.033652 403980000.0 1064140.0 1096570.0 1039470.0 974340.0 981470.0 1033030.0 1235760.0 1112340.0 1613490.0 1188020.0 False True 1058410.7884770688 1133068.6695594369 1185818.3407647917 1097691.3440986697 1106454.386871543 961619.0675910532 1175981.567738365 1195348.4591480724 1215867.009158313 1112199.5464849055 0.9516374933096893 1.0187638298725152 1.0661920736369275 0.9869553962397406 0.9948344165113895 0.8646101957425174 1.0573476418463232 1.0747607863408668 1.0932094092297082 1.0 20.084984223300236 2.0396490279190935 24.99996884918855 1.0647365850820083 0.9849034642734006 0.3204418229545728 0.053419381940698785 177.76815437706597 112087.69090012765 0.020451934231845263 0.015104744431924343 109.55924428308114 -2.0396490279190935 -0.07983312080860772 HNGPNDASDGTVR ddPTM_BT-474_Trastuzumab_2h_R1 5 HNGPNDASDGTVR 13 0 P31942;P31942-2 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ;;;; 209.77 8.205e-08 702983000.0 589432.0 727029.0 651414.0 669923.0 674841.0 704815.0 710410.0 632150.0 787760.0 678821.0 False True 586258.5636040522 751227.7207666888 743127.4290080107 754735.1831112474 760778.0012540169 656092.7980060473 676044.7542702571 679324.2429926578 593627.10344319 635498.0626121032 0.9225182547281723 1.1821085931857906 1.169362225831997 1.187627826919001 1.197136617737232 1.0324072355300236 1.0638030137991197 1.0689635153259396 0.9341131600042808 1.0 19.277528201454345 1.8361321279552751 1.0607956285983904 0.9800463499784097 1.132657039964729 0.30551954296023087 0.08278077341231968 0.6088373846438445 1.264185206497357 0.06892659307461398 0.02906192459098508 68.56968082803097 -1.8361321279552751 0.15261068998631944 HNGS(ph)LSPGLEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 HNGS(0.519)LS(0.481)PGLEAR 250.05 4.7995e-17 1732100000.0 604710.0 709760.0 641590.0 674560.0 665450.0 637890.0 580240.0 406160.0 632530.0 566490.0 True False 601454.3085495967 733383.932541019 731920.2951997495 759959.2268358053 750191.1130688338 593794.1657315436 552171.5744679462 436469.7216386903 476651.45696775836 530336.1232035108 1.1341002097245318 1.3828662624582162 1.3801064328384114 1.4329765474869967 1.414557825209572 1.1196562703379749 1.041172853043722 0.8230058307214342 0.8987723749393712 1.0 19.01654749368986 2.368291671374285 1.9879713506133412 0.8993902989163608 1.3561423433039326 0.8049503471886439 0.0948436863647962 0.12908428749179518 1.0434138414249232 0.04213003173154153 0.031154472405258263 233.50257347825845 -2.368291671374285 0.4567520443875718 HNGSLS(ph)PGLEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR 203.95 7.6745e-08 3987200000.0 1587680.0 1955930.0 1757080.0 2029570.0 1799520.0 1898710.0 1880260.0 1333340.0 1791880.0 1360060.0 True False 1579132.1072878297 2021031.9476653459 2004461.5911868538 2286513.353903502 2028678.2054093136 1767456.6467825805 1789304.6405092753 1432840.6013633334 1350295.1839618476 1273259.8063940515 1.2402277204995789 1.5872895205802735 1.5742754001350359 1.7957948114132698 1.5932947818047067 1.3881351142216012 1.4052942153076313 1.1253324688079367 1.0605024812539752 1.0 20.280095397952973 1.8386935336935368 1.2498674597109738 1.0056785138037523 1.5653486237774437 0.7178756207763262 0.13337982328988768 0.2369053029117362 0.6880717254988818 0.1087830461635865 0.04514685811519298 68.97528977589099 -1.8386935336935368 0.5596701099736914 HNGSLSPGLEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 89.23100000000002 0.0095397 127680000.0 165860.0 176700.0 171360.0 178760.0 180080.0 154220.0 197340.0 179500.0 225950.0 191290.0 False True 164967.0281887785 182581.35268259456 195485.99851217915 201390.99767132426 203012.12058221636 143559.13439483094 187793.91028799192 192895.2014825314 170267.6500748817 179081.70842839155 0.9211830154878324 1.01954216477448 1.091602264841845 1.1245760353679752 1.1336284557693603 0.8016404112664313 1.048649311736291 1.0771351422507978 0.9507819171993533 1.0 17.45025846107777 HNGYDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HNGYDPR 7 0 P12532;P12532-2;F8WCN3;C9JSQ1;P17540;C9J8F6;C9J6W7;C9JT96;D6RHV3;D6R998 P12532 CKMT1A;CKMT1B;CKMT2 Creatine kinase U-type, mitochondrial;Creatine kinase S-type, mitochondrial 0 ;;; 79.469 0.032541 538940000.0 811010.0 935630.0 921160.0 834330.0 960500.0 1130740.0 965570.0 797330.0 1090740.0 861210.0 False True 806643.6122716818 966771.8789497222 1050851.3211337468 939956.0924542167 1082813.9816704732 1052574.6052756512 918861.6902643985 856830.8133597028 821941.7421671896 806246.8404810248 1.0004921219789467 1.199101603142934 1.3033865912662497 1.1658415825771398 1.3430303565896051 1.3055240063299496 1.1396778804319843 1.0627400571870749 1.0194666210124939 1.0 19.620862076239863 1.7999630731763254 2.428211802712644 1.0202647738329276 1.224978602196199 0.46680710218035404 0.09152186179907339 0.2485850367136176 2.826550823818389 0.05712778355424702 0.026561995092027016 63.09036982537957 -1.7999630731763254 0.20471382836327146 HNIICLQNDHK ddPTM_BT-474_Trastuzumab_2h_R1 1 HNIICLQNDHK 11 0 F5H169;F5H5V4;F5GX23;J3KN29;O00233-2;O00233 F5H169 PSMD9 26S proteasome non-ATPase regulatory subunit 9 0 117.23 0.00051017 544990000.0 649210.0 660320.0 600670.0 550430.0 521890.0 609080.0 625570.0 524060.0 872180.0 590570.0 False True 645714.7254940114 682298.3520281304 685239.1148827649 620114.3815631403 588349.5980156191 566975.7332200983 595308.78919053 563168.0183227588 657242.9256132348 552879.3169875852 1.1679126088714056 1.2340818892370526 1.239400885199241 1.1216089343726796 1.0641555578915434 1.0254963710874894 1.0767427373375544 1.0186093077079328 1.1887638141254488 1.0 19.07660507644388 3.5161266765356993 3.060607083476327 1.0598405632255166 1.2153704266873735 0.6296058227725165 0.051820059705473605 0.15259057165282164 2.8636307648371098 0.014020407789019158 0.021912712970140944 3281.91007055855 -3.5161266765356993 0.15552986346185693 HNIMDFAMPYFIQVMK ddPTM_BT-474_Trastuzumab_2h_R1 3 HNIMDFAMPYFIQVMK 16 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 165.02 7.1739e-09 2319120000.0 1359730.0 1451820.0 1387650.0 1362670.0 1290268.0 1497220.0 1580120.0 1317900.0 1985570.0 1486130.0 False True 1352409.3647602035 1500142.9510562783 1583019.0583299808 1535183.8822822976 1454575.9817824007 1393720.705476779 1503683.5589554175 1416248.3901606014 1496252.8787748753 1391283.9110600953 0.9720585094164776 1.0782435843114417 1.1378116614054654 1.103429623585999 1.045491844057968 1.001751471714229 1.0807884336200502 1.0179434829239735 1.075447553788499 1.0 20.407985421471462 3.076339739911939 8.038538713093905 1.0370803009278466 1.0777326912632335 0.12382701779918937 0.046701554307567526 0.508220196167487 46.973970753622474 0.013641094048124748 0.01632639092010215 1192.174257485527 -3.076339739911939 0.04065239033538681 HNIQFSSFDIFSDEEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 HNIQFSSFDIFSDEEVR 17 0 O76003 O76003 GLRX3 Glutaredoxin-3 0 ; 237.73 3.1612e-20 400350000.0 129067.0 126365.0 133633.0 149575.0 131240.0 159446.0 145778.0 123488.0 163002.0 150075.0 False True 128372.11761269173 130570.98263574456 152447.36484114153 168511.17966372968 147952.63607957587 148423.87331551153 138726.16121396024 132703.30161935816 122832.3412148966 140497.08501432816 0.9136995091364358 0.9293501187048022 1.085057137132736 1.1993927108633222 1.0530655213557447 1.0564195926226867 0.9873952986271045 0.9445270811549209 0.874269677569253 1.0 17.100180672648143 1.9473411258854778 2.5272839533250995 0.9324468466116407 1.0442914790933975 0.2350279260261714 0.08029830896266067 0.4340113516934089 5.081871320859651 0.04790134298754508 0.02542434779025685 88.5811115923536 -1.9473411258854778 0.1118446324817568 HNKPEVEVR ddPTM_BT-474_Trastuzumab_2h_R1 6 HNKPEVEVR 9 1 F8WCF6;P59998;P59998-3;F8WDD7;H7C0A3;A0A0A6YYG9;P59998-2;F8WE39 F8WCF6 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 0 ;;;;; 154.24 4.5765e-05 5593180000.0 10653610.0 10235430.0 10108540.0 9413340.0 9047260.0 11559450.0 11313650.0 9960040.0 14517140.0 11056330.0 False True 10596252.147487339 10576110.100101916 11531734.566995235 10605067.878828498 10199374.933688696 10760372.429518411 10766365.527159937 10703308.760858318 10939585.366709748 10350705.553599657 1.023722691425831 1.0217767325459153 1.1141013051989341 1.024574394847932 0.9853796807254039 1.0395786426149747 1.040157646395006 1.0340656204963763 1.0568927219560695 1.0 23.30322577628262 HNKS(ph)PTLSCR ddPTM_BT-474_Trastuzumab_2h_R1 4 HNKSPTLSCR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 HNKS(0.895)PT(0.104)LS(0.001)CR;HNKS(0.962)PT(0.034)LS(0.003)CR;HNKS(0.954)PT(0.042)LS(0.004)CR;HNKS(0.994)PT(0.006)LSCR 128.22 0.00020306 688353000.0 590843.0 561060.0 523681.0 497744.0 464484.0 597544.0 622816.0 494812.0 828090.0 574091.0 True False 587661.966936828 579734.5429320682 597410.7328831492 560758.3393651583 523633.28418763995 556237.1897472758 592688.0106918315 531737.3840444249 624018.3153375029 537452.0208759671 1.0934221923270957 1.0786721798667478 1.1115610504347129 1.0433644634012267 0.9742884273357003 1.0349522713500856 1.1027738061638281 0.9893671683990912 1.1610679485778945 1.0 19.03577644340148 3.7192745791174078 19.508833347681893 1.0405484384115986 1.0929637485040662 0.1623317305716454 0.05257433100844823 79.42770964027231 80345.31678307164 0.01343285773946495 0.02089990980811036 5239.315833305158 -3.7192745791174078 0.05241531009246758 HNLFEDNMALPSESVS(ph)SLTDLKPPTGSNQASPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNLFEDNMALPSESVSSLTDLKPPTGSNQASPAR 34 1 Q9BZQ8 Q9BZQ8 FAM129A Protein Niban 1 HNLFEDNMALPS(0.004)ES(0.103)VS(0.409)S(0.409)LT(0.075)DLKPPTGSNQASPAR 118.93 2.3746e-06 76412000.0 41669.0 33893.0 28480.0 27928.0 27522.0 27931.0 32723.0 28724.0 44893.0 37090.0 True False 41444.65873386114 35021.10801624886 32489.73644740232 31463.68193647764 31026.763564325596 26000.195712501773 31140.06347600065 30867.53073751657 33829.72168538026 34722.88444565342 1.1935834074708949 1.0085886750296393 0.9356865642384544 0.906136757898759 0.8935537487643685 0.7487913555452463 0.896816723989033 0.8889679308131482 0.974277403086397 1.0 15.083599177636895 4.865879759897458 1.2140220664873704 0.8892962343908433 1.401395858503879 0.664044216664258 0.06294142488537041 1.0913563455005586 1.1259488068848946 0.017739631387073487 0.7544026601933809 73431.05365431204 -4.865879759897458 0.5120996241130358 HNLFEDNMALPSESVSS(ph)LTDLKPPTGSNQASPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNLFEDNMALPSESVSSLTDLKPPTGSNQASPAR 34 1 Q9BZQ8 Q9BZQ8 FAM129A Protein Niban 1 HNLFEDNMALPS(0.005)ES(0.004)VS(0.056)S(0.808)LT(0.127)DLKPPTGSNQASPAR 141.5 1.7766e-10 152790000.0 173870.0 134850.0 129350.0 136330.0 126610.0 160860.0 140810.0 113070.0 183440.0 140660.0 True False 172933.90323877305 139338.4007314535 147561.35566964484 153589.36402177013 142733.03302373606 149740.1268237095 133998.48235356327 121507.85755782625 138233.66997006547 131682.95837491535 1.313259554409553 1.058135406821149 1.1205805025242674 1.1663571802851278 1.0839142345007162 1.137126084283309 1.0175840823081705 0.9227303142133282 1.0497460846566002 1.0 17.006709127101793 2.17548341148457 3.830867736460509 0.9796379197709928 1.1403045945638757 0.5166585470187816 0.07046667219227 0.17014669546169275 5.020769995651643 0.026667784219303697 0.019359146118866903 149.7902037384412 -2.17548341148457 0.16066667479288288 HNLITEMVALNPDFKPPADYKPPATR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNLITEMVALNPDFKPPADYKPPATR 26 2 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 0 181.38 1.2122e-17 1069600000.0 777760.0 528160.0 566800.0 560950.0 535400.0 753770.0 747270.0 706960.0 1114900.0 711390.0 False True 773572.62657726 545739.4863205376 646600.5132860825 631966.2124845006 603580.0164355767 701663.6540837217 711121.6952513837 759716.9450701403 840147.8338946037 665988.4811483789 1.1615405498355937 0.8194428308722499 0.9708884336424779 0.948914628965935 0.9062919757933502 1.053567252205064 1.067768760842801 1.140735863419354 1.2615050525287133 1.0 19.345137699280162 2.2794406590743113 1.7589478851875195 1.1435350554658381 0.954417107700827 0.3441146635473118 0.10104045995780879 0.34647438190468194 2.159588941516342 0.047857620239919046 0.03128601791606291 190.30081974697598 -2.2794406590743113 -0.18911794776501112 HNMNIGTWDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HNMNIGTWDEK 11 0 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739 A0A024R7W5 YTHDF3 YTH domain-containing family protein 3 0 114.72 0.0012195 559330000.0 452690.0 395130.0 359210.0 406170.0 322910.0 471770.0 469590.0 412890.0 661880.0 454320.0 False True 450252.7673385871 408281.6631888715 409783.6456907091 457591.0803544519 364030.6744624806 439157.65032712556 446874.13769199426 443701.94841293717 498768.54273760936 425324.9086370794 1.0586089791481694 0.9599288800112327 0.9634602567807019 1.0758624079195525 0.8558884445046695 1.0325227641484063 1.0506653351762718 1.0432070621839327 1.1726765411785414 1.0 18.698205821558748 2.486022710104395 24.37997381430879 1.0635116019746462 0.9814454854862357 0.24703460286401602 0.0692443295456737 434.5084498356447 1190070.798881668 0.022345586633442948 0.01962938876578107 306.2123553909303 -2.486022710104395 -0.08206611648841056 HNMSGGEFQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 HNMSGGEFQGK 11 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 ; 147.72 3.5166e-05 436470000.0 672420.0 654920.0 620720.0 606980.0 645050.0 772250.0 755320.0 680640.0 923980.0 733460.0 False True 668799.7654328847 676718.6162925004 708111.9806050402 683823.605764938 727193.2939891074 718866.1751809628 718782.2859973961 731432.8130198893 696277.509697673 686649.9548533014 0.974003945832589 0.985536533585118 1.0312561380075005 0.9958838574613069 1.0590451347870078 1.046917967590261 1.0467957959029643 1.0652193418932876 1.0140210521770565 1.0 19.38921529386055 4.260130965792462 0.9071592074352212 1.0429782079089471 0.9587634229084251 0.4448819513829011 0.02287282728235439 0.9034411426667922 0.9425653581317637 0.00767463875427217 0.0652944397374599 18202.496901337432 -4.260130965792462 -0.08421478500052204 HNPTVTGHQEQTYLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 HNPTVTGHQEQTYLQK 16 0 Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2;Q96J85;Q71RC2-7 Q71RC2-5 LARP4 La-related protein 4 0 121.31 5.7493e-05 226260000.0 165480.0 175290.0 177960.0 157430.0 169110.0 179290.0 191090.0 153950.0 237910.0 198630.0 False True 164589.07406655638 181124.42168495723 203015.22114395062 177360.62185833848 190645.1561065001 166896.1043032631 181846.24666531073 165438.5307422599 179280.26833067113 185953.2633443015 0.885109898619051 0.9740319606523741 1.0917540111574062 0.9537913918184199 1.0252315698999663 0.8975164044002114 0.9779137154942722 0.8896780178358173 0.9641146657304153 1.0 17.504580540855812 2.7415042156655485 24.9822389086163 0.937707446693501 0.9894074353163845 0.09600608767096075 0.05852988112707012 495.4084750416456 4204534.303687279 0.01792592452345928 0.018282335684650607 551.447555217836 -2.7415042156655485 0.0516999886228835 HNQLPLVIEFTEQTAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HNQLPLVIEFTEQTAPK 17 0 P07237;H7BZ94;I3L398;I3L312;I3L4M2;I3NI03 P07237 P4HB Protein disulfide-isomerase 0 ; 107.03 0.00072439 4272100000.0 2211700.0 1980590.0 1824710.0 1765020.0 1799970.0 2244700.0 2196200.0 2016140.0 2883000.0 1933350.0 False True 2199792.4529429693 2046512.7408580615 2081613.307336356 1988471.3510284207 2029185.5102419553 2089529.172455432 2089961.4157012703 2166594.6045514797 2172523.2802207745 1809961.9477757893 1.2153804977205358 1.130693793520335 1.150086779390247 1.09862605314548 1.1211205366696044 1.154460277478869 1.1546990909226376 1.1970387594136696 1.200314339696769 1.0 20.787527936062357 2.502805339450721 21.568910224923915 1.1584539246627865 1.1401355153234263 0.0 0.060247335934433675 706.3181158830579 593148.8491462308 0.018603992905311603 0.01744552032007616 318.277061262968 -2.502805339450721 -0.018318409339360242 HNQVESIFLSAIDMYGHQFCIENLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HNQVESIFLSAIDMYGHQFCIENLQK 26 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 193.88 1.3063e-18 540290000.0 155627.0 144804.0 142901.0 132421.0 136254.0 179110.0 212909.0 126536.0 209823.0 155178.0 False True 154789.12152378514 149623.71360413346 163020.2186822417 149185.48502256908 153605.13925926984 166728.5472795885 202609.77827863637 135978.7588567886 158114.9331341533 145274.4071854301 1.065494773117266 1.0299385590550156 1.1221537354075082 1.026922001699493 1.0573448017117448 1.14768010766531 1.3946694548890686 0.936013173216557 1.0883880801684045 1.0 17.148421041972064 4.241887373280096 24.92592743323272 1.0994499360909624 1.0477166655176782 0.027271939602174 0.11592483626872116 360.89026507536994 2703854.8586224862 0.028849758972120266 0.07259653212744882 17453.694630125727 -4.241887373280096 -0.05173327057328425 HNS(ph)TTSSTSSGGYR ddPTM_BT-474_Trastuzumab_2h_R1 4 HNSTTSSTSSGGYR 14 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12 A0A0A0MRT6 ABI1 Abl interactor 1 1 HNS(0.412)T(0.412)T(0.174)S(0.001)ST(0.001)SSGGYR;HNS(0.968)T(0.029)T(0.003)SSTSSGGYR;HNS(0.74)T(0.25)T(0.006)S(0.003)S(0.001)TSSGGYR;HNS(0.935)T(0.058)T(0.007)S(0.001)STSSGGYR 236.4 3.0428e-17 623861000.0 546602.0 422133.0 373129.0 485189.0 484153.0 553997.0 468759.0 387767.0 626361.0 492821.0 True False 543659.1555651907 436183.44172021333 425662.3199045918 546613.8776524513 545807.014750342 515700.49135866424 446083.33633672324 416704.1425809289 472002.7243573933 461368.74185471435 1.1783614845246488 0.9454117762004087 0.9226076265882647 1.1847657373905507 1.1830168913398502 1.11776209477377 0.966869438409409 0.9031911024265914 1.0230487710544283 1.0 18.81556073788813 2.2192617529168905 16.10385023843818 0.9586179423409465 1.083252622719756 0.26830403075897113 0.09181795261896712 5.6906273987647245 4745.458256276084 0.03706906392381313 0.027568613094715425 165.67682106719167 -2.2192617529168905 0.12463468037880954 HNS(ph)TTSSTSSGGYRR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNSTTSSTSSGGYRR 15 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12 A0A0A0MRT6 ABI1 Abl interactor 1 1 HNS(0.871)T(0.099)T(0.027)S(0.002)STSSGGYRR 76.016 0.018444 100420000.0 9929.0 8266.9 7058.1 9052.9 8727.6 5291.4 8383.3 6592.0 10887.0 9481.5 True False 9875.543367215612 8542.05876905342 8051.819129895027 10198.996211785256 9839.008127461962 4925.617972615793 7977.767751684022 7083.928513497747 8204.044728325907 8876.382552479457 1.1125639649743417 0.9623355819277245 0.9071059164350568 1.1490036793126215 1.1084479594351881 0.5549127635604113 0.898763398773927 0.7980648052983002 0.9242554249798817 1.0 13.115756130506142 2.8016763644642833 24.999995757360463 0.826180008714481 1.04093434437374 0.4053872866830006 0.12842620989157355 214.8246789043631 85090.9461793297 0.038073522944314694 0.040383064631005355 633.397528544321 -2.8016763644642833 0.21475433565925894 HNS(ph)WDTVNTVLPEDPEVADLFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HNSWDTVNTVLPEDPEVADLFSR 23 0 Q8N961 Q8N961 ABTB2 Ankyrin repeat and BTB/POZ domain-containing protein 2 1 HNS(0.65)WDT(0.302)VNT(0.048)VLPEDPEVADLFSR;HNS(0.499)WDT(0.499)VNT(0.002)VLPEDPEVADLFSR 93.278 0.0029744 165560000.0 129422.0 133262.0 108765.0 127334.0 127988.0 132305.0 126306.0 108047.0 143399.0 121332.0 True False 128725.20633213605 137697.5451114198 124078.16659767237 143454.47134415078 144286.51315569 123159.06676246981 120196.09624422375 116110.01579154904 108060.23789815423 113588.48788244862 1.1332592653698519 1.2122491255797099 1.0923480795525635 1.2629314292185148 1.2702564832539225 1.0842565920053946 1.0581714616063316 1.0221987981010006 0.9513308955215998 1.0 16.793457100507382 2.3379383604343342 2.092802898139109 1.0030524027960623 1.192223388340315 0.7078611529377559 0.05635061011999303 0.18253926656930333 1.6376284716462557 0.025469367625830967 0.01858554562366955 217.7400711186868 -2.3379383604343342 0.1891709855442527 HNS(ph)WSSSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 HNSWSSSSR 9 0 Q96F86;H3BPW9;H3BQ37 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 1 HNS(1)WSSSSR;HNS(0.851)WS(0.148)S(0.001)SSR;HNS(0.702)WS(0.279)S(0.017)S(0.002)SR;HNS(0.971)WS(0.023)S(0.005)S(0.001)SR 98.337 0.0039177 2256610000.0 1192980.0 1898110.0 1701320.0 1864590.0 1743330.0 1578520.0 1633040.0 1246590.0 1390640.0 1659940.0 True False 1186557.128232539 1961287.4439182729 1940851.067861463 2100646.902819281 1965332.7419735389 1469400.6278363909 1554043.6163813847 1339616.8758557562 1047935.4056213032 1554001.2080538652 0.7635496819970362 1.2620887511242462 1.2489379402040905 1.3517665828908851 1.2646919010023163 0.9455595145106593 1.000027289764834 0.8620436515190418 0.6743465836385498 1.0 20.567556194596595 2.4220298159019915 1.8908938230773376 0.8583290230308274 1.1934219932192576 0.39041485855688873 0.17362075544007724 0.3348534798627044 2.440269247044101 0.07665693558471624 0.05871300171700046 264.25901745591926 -2.4220298159019915 0.3350929701884302 HNT(ph)PSLLEAALTQEASTPDSQVWPTAPDITR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNTPSLLEAALTQEASTPDSQVWPTAPDITR 31 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 HNT(0.453)PS(0.453)LLEAALT(0.093)QEASTPDSQVWPTAPDITR 65.587 0.022723 47521000.0 41815.0 31864.0 32875.0 28023.0 28559.0 39418.0 45721.0 42748.0 54033.0 40409.0 True False 41589.872686083254 32924.57397780523 37503.51424537749 31570.70892673709 32195.819367545046 36693.12643999122 43509.30055881874 45938.07282994562 40717.2911551055 37830.06302411456 1.0993868199366208 0.8703282877646185 0.9913680085986397 0.8345402149241072 0.8510643862005199 0.9699462149085343 1.150124982109704 1.2143271556450395 1.0763209971167769 1.0 15.207245559439297 2.3139490635190283 4.4942124697546015 1.1384028075186936 0.9234548059658849 0.46496100510907734 0.08994265360382271 0.15351737736325072 5.833086049745804 0.03183240932608667 0.025884514153669106 206.03882452641628 -2.3139490635190283 -0.2149480015528087 HNTEDFTLFTLDDVDAAFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 HNTEDFTLFTLDDVDAAFDK 20 0 Q9P2I0 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 0 154.84 3.6764e-08 79780000.0 99821.0 83464.0 87008.0 78287.0 85773.0 104870.0 115120.0 94099.0 132110.0 116680.0 False True 99283.57482715561 86242.04878494647 99257.97011290664 88198.12617305307 96695.68313359859 97620.58373742644 109551.20579889369 101121.14520504013 99553.26068330448 109233.38250522627 0.9089123906092114 0.7895209944709002 0.9086779868613667 0.8074283167861549 0.885220991201771 0.8936881885238314 1.002909580261805 0.9257348155469047 0.9113812865635774 1.0 16.737054296032063 2.5678848004442396 2.6368053435134553 0.9523055752731688 0.8548191664955703 0.5056621415494155 0.04581345625408211 0.2258087412010868 3.087818776329868 0.01552732685645696 0.013964319811493276 369.73009335783286 -2.5678848004442396 -0.09748640877759851 HNTPSLLEAALTQEAST(ph)PDSQVWPTAPDITR ddPTM_BT-474_Trastuzumab_2h_R1 4 HNTPSLLEAALTQEASTPDSQVWPTAPDITR 31 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 HNTPSLLEAALT(0.001)QEAS(0.14)T(0.853)PDS(0.006)QVWPTAPDITR;HNTPSLLEAALTQEAS(0.173)T(0.826)PDS(0.001)QVWPTAPDITR;HNTPS(0.001)LLEAALT(0.011)QEAS(0.22)T(0.767)PDS(0.001)QVWPTAPDITR;HNTPS(0.002)LLEAALT(0.003)QEAS(0.218)T(0.774)PDS(0.003)QVWPTAPDITR 149.68 4.4435e-08 506110000.0 157580.0 222810.0 229995.0 242417.0 247280.0 290166.0 279026.0 225067.0 243308.0 246315.0 True False 156731.606788784 230226.0961585107 262376.296847623 273106.96734442486 278769.6422566106 270107.50739729294 265528.4463971691 241862.64240706852 183348.00356016503 230594.965819119 0.6796835578436948 0.9984003568365077 1.1378231780369117 1.1843578907904377 1.2089146927660177 1.1713504084437296 1.1514928153524924 1.0488634977260864 0.7951084400688306 1.0 17.815001491905814 4.70434243345849 2.7756528686109028 1.099743936650824 0.6184978378282479 0.5235819622131106 0.11586327374714538 0.306033666460612 3.395707545658452 0.029568509954102887 0.3227663737699863 50622.36530116988 -4.70434243345849 -0.4812460988225761 HNTYLQECTGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HNTYLQECTGQR 12 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6R960 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 0 113.25 0.0011857 124120000.0 112020.0 120980.0 151520.0 156880.0 138090.0 168010.0 165380.0 146580.0 138940.0 156250.0 False True 111416.89676659211 125006.74616604552 172852.69896455065 176740.99191473125 155674.94297644516 156395.8641529993 157379.9375870485 157518.54391815828 104700.09870061549 146277.99122764476 0.7616791550903912 0.8545834210390822 1.1816726324573945 1.2082541634009625 1.0642403663732052 1.0691687986718974 1.0758962183321643 1.0768437725742381 0.7157611190987455 1.0 17.15835319445806 4.395306776148315 5.768559135415253 1.0601873401322939 0.7835013617228267 0.3726874784018547 0.12664544494080976 0.17806021615767847 9.368188857422867 0.030933344819290918 0.08848147368840581 24848.877560046094 -4.395306776148315 -0.2766859784094672 HNVEVLGILSDDVETDTVAPGENLK ddPTM_BT-474_Trastuzumab_2h_R1 4 HNVEVLGILSDDVETDTVAPGENLK 25 0 P15170-2;P15170-3;P15170;H3BR35 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 ;;; 229.76 3.0914999999999995e-34 909040000.0 1215790.0 1047530.0 986300.0 922770.0 910610.0 1296560.0 1251880.0 1041830.0 1613530.0 1167990.0 False True 1209244.3217269673 1082396.4028047435 1125162.4669267167 1039592.5873862606 1026570.7858916696 1206931.8589739455 1191321.7817539864 1119576.644905546 1215897.1516942861 1093447.878233453 1.1059002864229726 0.9898930020820343 1.0290042070816408 0.9507472720746418 0.9388383354405256 1.1037854505912383 1.0895094365893836 1.0238957587208508 1.111984554452343 1.0 20.06045302189465 2.7251637967567066 24.840889679444587 1.0656405065018368 1.0007107629426804 0.25733088966832796 0.05341419710269195 1027.711611997366 1905619.9737727481 0.017222027148999036 0.016321612020441967 531.0847082316632 -2.7251637967567066 -0.06492974355915648 HNVFQNDEFDVFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HNVFQNDEFDVFSR 14 0 Q9H1I8;H7C3Y4;Q9H1I8-3 Q9H1I8 ASCC2 Activating signal cointegrator 1 complex subunit 2 0 ; 206.63 1.0575e-08 254500000.0 248850.0 288200.0 248670.0 277710.0 260460.0 265640.0 283360.0 238910.0 333850.0 267230.0 False True 247510.21924983434 297792.56277942134 283680.5745216132 312868.0575257518 293628.03713263036 247276.93204929912 269652.7942596809 256738.67736039843 251577.1408608066 250175.1526128866 0.989347729639738 1.190336289072706 1.133927856378974 1.250596049440107 1.1736898491553294 0.9884152341536807 1.0778560198459572 1.0262357179718324 1.0056040267519668 1.0 17.932578982636468 2.74383802411751 24.918597259943223 1.0264836833926991 1.1549196439171785 0.4797484274282632 0.0662125991727717 365.3357206755769 1725024.8481846864 0.02023945115159053 0.020897158410865452 554.4188965179792 -2.74383802411751 0.12843596052447936 HNVGVK ddPTM_BT-474_Trastuzumab_2h_R1 4 HNVGVK 6 0 O75874;C9J4N6;C9JLU6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;; 83.229 0.057225 2440110000.0 5621900.0 5462830.0 5112790.0 4934480.0 5286260.0 4278660.0 5792760.0 5436880.0 8020500.0 5841740.0 False True 5591632.315051806 5644656.994199531 5832626.390832663 5559184.6620563725 5959433.876882191 3982886.3050822644 5512542.068307844 5842607.593517239 6043955.244193799 5468915.151834767 1.0224390322047452 1.0321346807338572 1.0665051895851545 1.0165059262605896 1.0896921439497667 0.7282772166882211 1.0079772523913524 1.0683302686744192 1.1051470129621797 1.0 22.38282324872412 -2.923012321579936 1.987578120995791 5.5244630896797886e-05 1.0146369796760384 0.002014048939005031 0.10090363113329821 1424787.8788421417 907165.0082293527 6597995.14823106 0.025493222180152444 0.0011939542297276862 2.923012321579936 1.0145817350451416 HNYECLVYVQLPFMEDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HNYECLVYVQLPFMEDLR 18 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 156.85 8.5785e-09 2065600000.0 890810.0 1092850.0 1003240.0 1050800.0 976670.0 1033200.0 1058900.0 939110.0 1235050.0 1100030.0 False True 886013.9779382963 1129224.851608224 1144487.4716815965 1183831.1722590495 1101043.1353233736 961777.3158911885 1007676.9616091778 1009191.1569039554 930688.4763221181 1029825.1436169364 0.8603538022255421 1.0965209565986875 1.1113415503353752 1.1495458035732313 1.0691554213332823 0.9339229303658761 0.9784932596130154 0.9799636017426118 0.9037344660797152 1.0 19.97396796901249 2.7476415728610215 23.93343775934973 0.961443981472067 1.0676756172381108 0.2864172221581882 0.07657286659147429 458.8952511657715 1209446.6817744304 0.023689013185832046 0.02477520051436961 559.2958190987706 -2.7476415728610215 0.10623163576604377 HPAKPDPSGECNPDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 HPAKPDPSGECNPDLR 16 1 Q16576;E9PC52;Q16576-2;Q5JP01 Q16576 RBBP7 Histone-binding protein RBBP7 0 ;;;; 271.68 2.2273000000000002e-35 8651670000.0 5500820.0 5651770.0 5576270.0 5294290.0 4951580.0 6495350.0 6087210.0 5536010.0 7371590.0 6315520.0 False True 5471204.196318556 5839885.747882883 6361360.346192279 5964546.571164215 5582134.362685979 6046341.742909244 5792748.396899607 5949135.177489177 5554960.418745291 5912458.106611295 0.9253687886939393 0.9877255183174556 1.075924806820876 1.0088099507199342 0.944130894803982 1.0226443272635186 0.9797529711749114 1.0062033540393074 0.9395348463499047 1.0 22.495326625434007 1.2734095637214549 24.99807766991682 0.9697671203537366 0.9959328710770222 0.049185601599155304 0.04147700558605855 482.78031389078484 346311.2006493114 0.027561453126529856 0.010063146259641016 18.767635656410402 -1.2734095637214549 0.02616575072328564 HPALFK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPALFK 6 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 84.566 0.055705 5996500000.0 6673700.0 6867700.0 6439000.0 5937300.0 5503000.0 6629200.0 6806900.0 6426700.0 8827400.0 6754100.0 False True 6637769.540717771 7096287.242887673 7345555.231208686 6688961.571234921 6203774.43116357 6170939.007458256 6477624.24211683 6906292.988121357 6652005.551099845 6323047.555524075 1.0497737811443062 1.1222890830052454 1.161711210726433 1.0578698819671486 0.9811367662012437 0.9759437918614211 1.0244465481613705 1.0922411902608156 1.0520252287662109 1.0 22.592188639359687 3.4875660263974164 23.9560241731145 1.0274834878743457 1.1119327154899885 0.4890169752746043 0.041004471833024685 278.79359062345566 639438.2798698562 0.012503523504552206 0.01804552721779904 3073.0245259711082 -3.4875660263974164 0.08444922761564277 HPAPEDPDWIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPAPEDPDWIKR 12 1 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 0 62.258 0.051309 411700000.0 244090.0 259220.0 239250.0 218720.0 233750.0 289070.0 264730.0 216970.0 350380.0 242280.0 False True 242775.8465609485 267847.98099820095 272934.3204017206 246409.92957413322 263516.6769552034 269087.27129758603 251923.99853319232 233161.40315133583 264033.54385145864 226817.48297365633 1.0703577315913768 1.1808965406309093 1.2033213525847146 1.086379790233156 1.161800552146192 1.1863603623925194 1.1106903896048084 1.0279692733316166 1.1640793310545854 1.0 17.791172321186515 0.9734827506542835 0.495740259661546 1.0015427074194314 1.1530651695143557 0.3369643024440163 0.054798117703221835 1.1573418478263087 0.7138080984126421 0.06642140911313664 0.0316222299351251 9.407684637714933 -0.9734827506542835 0.15152246209492426 HPASLEFQAQITTLLVDLGTPQAEIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HPASLEFQAQITTLLVDLGTPQAEIAR 27 0 Q92797;A0A087WUE9;M0R3C7;Q92797-2 Q92797 SYMPK Symplekin 0 ; 156.43 2.0332e-08 148819000.0 118520.0 150532.0 136591.0 142619.0 146943.0 143382.0 152087.0 119797.0 129042.0 150311.0 False True 117881.90148880983 155542.36662148434 155821.82552974482 160674.55077694455 165655.32005060287 133470.3398249232 144729.97078123988 128736.86045684009 97241.32817421069 140718.02329227864 0.8377171504460591 1.105347865059295 1.1073338147032865 1.1418192710340678 1.1772146607441192 0.9484949880776706 1.0285105446700897 0.9148569418819006 0.6910367691296758 1.0 17.10244759653743 1.6927773387563847 2.3845435155183563 0.8363627374521089 1.0634517628285074 0.33973135266499843 0.1167439351377877 0.26532791843097725 3.2789947929905887 0.07646948330121547 0.03191753626119383 49.292102029749806 -1.6927773387563847 0.22708902537639852 HPASLTSSGSSGS(ph)PSSSIK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPASLTSSGSSGSPSSSIK 19 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 HPASLTSSGSSGS(0.998)PS(0.001)SSIK;HPASLTSS(0.001)GS(0.149)S(0.118)GS(0.728)PS(0.003)S(0.001)SIK 215.4 2.6235e-19 280780000.0 225016.0 292643.0 232659.0 302404.0 276518.0 304941.0 360620.0 296599.0 397988.0 341883.0 True False 223804.53885762804 302383.4453485709 265415.3648917199 340688.3153938193 311730.9282494071 283861.14642390166 343175.4328978197 318732.72347920504 299909.1901659751 320063.73423923797 0.6992499146758717 0.9447600993199323 0.8292578524167625 1.0644389818284288 0.9739651666264622 0.8868894412502356 1.0722096763431073 0.9958414196372588 0.9370295915556681 1.0 18.287999691784993 5.498159468986053 0.8600763649325096 0.9877658838629031 6.44467503623317e-15 0.5916766753002421 0.06820028692556311 4.962924404880963 1.1054215669627363 0.021216409414112524 6.31353483320942 314890.4350899587 -5.498159468986053 -0.9877658838628967 HPDADSLYVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 HPDADSLYVEK 11 0 P54577 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed 0 ;; 164.04 2.3244e-05 1857750000.0 4307070.0 4108230.0 3782940.0 3710560.0 3681150.0 4110400.0 3936750.0 3813340.0 5213930.0 4092000.0 False True 4283881.213680466 4244969.952072526 4315545.070096073 4180316.515547714 4149922.6326145376 3826257.722840832 3746314.362654569 4097910.7945481595 3929026.814582552 3830845.056662546 1.118260109797447 1.1081027526001712 1.1265256115202424 1.0912256835544347 1.0832916944518696 0.9988025269219031 0.9779341913448151 1.06971457574906 1.0256292688604698 1.0 21.86923124465394 2.953904536592426 2.953386784931516 1.0201039641976817 1.111611320896 0.7776840630380202 0.024503210164480666 0.13844358498249298 2.4097188951824826 0.008451113429905403 0.009511435639859818 899.2998823398541 -2.953904536592426 0.09150735669831822 HPDASVNFSEFSK ddPTM_BT-474_Trastuzumab_2h_R1 6 HPDASVNFSEFSK 13 0 P09429;Q5T7C4 P09429 HMGB1 High mobility group protein B1 0 ;;;;; 218.5 2.4043e-11 14133290000.0 14288710.0 14294400.0 13502900.0 12626480.0 12689830.0 15141400.0 15337660.0 14172330.0 17289020.0 15209960.0 False True 14211781.17298493 14770180.462852737 15403990.950689211 14224991.073377851 14305804.631984822 14094710.657021731 14595718.790248925 15229941.230233546 13028372.681998815 14239247.330898102 0.9980710948215941 1.0372866008726844 1.0817981170439888 0.9989988054010891 1.004674214833132 0.9898494161582025 1.0250344313197866 1.069574878244141 0.9149621731570193 1.0 23.76336955344568 HPDGRPTGDAFALFACEELAQAALR ddPTM_BT-474_Trastuzumab_2h_R1 2 HPDGRPTGDAFALFACEELAQAALR 25 1 Q9H6T0-2;Q9H6T0 Q9H6T0-2 ESRP2 Epithelial splicing regulatory protein 2 0 ; 133.68 3.4767e-05 185134000.0 76302.0 90205.0 79313.0 84109.0 74031.0 85121.0 87266.0 68788.0 85684.0 75609.0 False True 75891.19850994908 93207.41889492594 90479.58099904566 94757.19077610983 83458.40903388518 79236.78562328107 83044.61019150673 73921.3098583864 64568.32630677667 70783.56888787833 1.072158407697149 1.3167945663006502 1.2782568387073836 1.3386890808826817 1.1790647228608082 1.1194234321356797 1.173218749722128 1.0443286629906763 0.9121937099421104 1.0 16.11112688342958 1.908540242419483 0.975486717453362 0.9544133753502914 1.2481914078927632 0.6403431909308317 0.0800199715678239 0.3300756938270162 0.5777814377868198 0.06651762078750284 0.02986432679560599 81.01030036392162 -1.908540242419483 0.2937780325424718 HPDGVASVSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPDGVASVSFR 11 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 75.73899999999998 0.037264 207200000.0 22579.0 45398.0 31183.0 45888.0 46592.0 38393.0 42008.0 49754.0 50326.0 56155.0 False True 22457.43717276273 46909.04498632949 35573.29535250516 51697.41609499733 52525.21502758005 35738.982277400726 39975.91255385617 53466.89612569279 37923.831633850394 52571.13982328575 0.42718185773129236 0.8922965175191371 0.6766696608078565 0.9833801638841125 0.9991264257183682 0.6798213315810698 0.7604155566767705 1.0170389362950483 0.7213811943459612 1.0 15.681983394648984 4.995862448012227 2.1982497359598527 0.8630718259299139 1.0221299543059963e-10 0.47465310478471845 0.13420190249623032 1.7463595860289067 4.731610728061039 0.03302581902698327 3.848626104614679 99051.81731822193 -4.995862448012227 -0.8630718258277009 HPDIEAQER ddPTM_BT-474_Trastuzumab_2h_R1 1 HPDIEAQER 9 0 P48449-2;P48449;A0A0G2JQD0;P48449-3;H7C3A5 P48449-2 LSS Lanosterol synthase 0 116.77 0.0012606 360310000.0 107420.0 153430.0 96339.0 90885.0 115020.0 136530.0 123030.0 90339.0 165070.0 112270.0 False True 106841.66265548405 158536.82479960626 109902.69380640076 102391.0316813509 129667.11522304795 127092.0024570501 117078.56887975919 97080.554912147 124390.71032467687 105104.83248081719 1.0165247413812666 1.5083685598237455 1.0456483418729507 0.9741800568497971 1.2336931819639563 1.2091927598119316 1.1139218446604473 0.9236545325341277 1.1834918280030517 1.0 16.68146947709403 2.686869372135858 0.3339265031681695 0.9962465306356934 1.240988095181376 0.08082199747569352 0.15643078777470104 4.168865133909532 0.9651208778861619 0.19303266919242656 0.37064112669642246 486.2609252702231 -2.686869372135858 0.24474156454568274 HPDSHQLFIGNLPHEVDK ddPTM_BT-474_Trastuzumab_2h_R1 3 HPDSHQLFIGNLPHEVDK 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ;; 214.26 3.527900000000001e-19 1172320000.0 1532210.0 1390100.0 1309180.0 1233020.0 1308580.0 1638640.0 1403820.0 531460.0 2008280.0 1168550.0 False True 1523960.7516045356 1436368.638166806 1493501.164403447 1389120.2055756098 1475219.9064386748 1525364.6737436485 1335911.8634868192 571120.2438991974 1513366.3035732848 1093972.138554013 1.3930526179751446 1.3129846616252627 1.3652095074171835 1.2697948664503618 1.3484986083727746 1.3943359432899634 1.2211571176324438 0.5220610505255562 1.3833682323698089 1.0 20.06114456514952 1.9821034035407694 23.75571258004746 0.9044312521114756 1.3401504415212055 0.40881315703161436 0.19920874272766392 299.6321973659317 397727.18936034845 0.07602828481314258 0.050245871599125295 95.96290876386028 -1.9821034035407694 0.43571918940973 HPDSHQLFIGNLPHEVDKSELK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPDSHQLFIGNLPHEVDKSELK 22 1 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ; 211.35 1.1405e-23 2130700000.0 3224900.0 2919900.0 2880200.0 2550470.0 2642100.0 3556300.0 3601100.0 1309110.0 5291100.0 2955900.0 False True 3207537.496720075 3017087.1063831733 3285707.1248528115 2873359.2404944226 2978555.7740463866 3310461.351629734 3426901.035462091 1406802.435725884 3987179.302107577 2767251.931326689 1.1591057035353851 1.090282771954452 1.1873538103477128 1.0383439281283158 1.0763587298748014 1.1962992289041847 1.2383769604306138 0.5083752656562166 1.4408443470472254 1.0 21.400022562578297 HPDVEVDGFSELR ddPTM_BT-474_Trastuzumab_2h_R1 5 HPDVEVDGFSELR 13 0 P09874;Q5VX84;Q5VX85 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;;; 243.4 5.555399999999999e-17 11303420000.0 5213340.0 6147860.0 5507660.0 5941110.0 5700310.0 5951870.0 5533170.0 5002780.0 6806310.0 5735080.0 False True 5185271.956696531 6352487.803640157 6283090.654561089 6693253.916844264 6426210.690115577 5540431.236094936 5265509.428337942 5376112.847202107 5128986.100381363 5369062.284350981 0.96576863557904 1.1831652283408096 1.1702398522874646 1.2466336880376407 1.1968962827728464 1.0319178550495565 0.9807130462399625 1.0013131832855946 0.9552852674722438 1.0 22.356238710449684 2.595552931722022 4.167381626117486 0.9878935975929463 1.1599281993921005 0.5671880092751005 0.0699707350018945 0.17154063243609954 5.017490841357155 0.02385008970486374 0.02220279364343855 394.05145162788847 -2.595552931722022 0.1720346017991542 HPEAEMAQNSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPEAEMAQNSVR 12 0 P14923 P14923 JUP Junction plakoglobin 0 156.0 7.2815e-05 297540000.0 116680.0 150070.0 149090.0 128970.0 150030.0 154040.0 127140.0 136320.0 145040.0 135300.0 False True 116051.80784436673 155064.9892307691 170080.57608648937 145297.58877640814 169135.4312025205 143391.57737115648 120989.75247803457 146492.890618934 109296.8354364279 126665.03816384233 0.9162102623318418 1.2242130226194792 1.3427586534690705 1.1471009750019927 1.3352968873995235 1.1320533230778191 0.955194536960809 1.1565376898196973 0.8628808471604571 1.0 16.950658843997786 2.4454703714592934 6.821446307085042 1.0227118974923737 1.2038977773975923 0.33160817478426796 0.130966302108178 0.22813775177833345 33.84747627929336 0.04464363752172529 0.03763785275311914 278.9140368456229 -2.4454703714592934 0.18118587990521862 HPECNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 HPECNLR 7 0 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8;K7EMK2;H0YH35 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 ;; 88.029 0.018908 295889000.0 153915.0 205667.0 194595.0 204753.0 214142.0 158778.0 205663.0 208410.0 253591.0 254657.0 False True 153086.33874156396 212512.50176667303 221992.28454993851 230674.70880620208 241411.71438092474 147802.05058320877 195714.29498104443 223962.6124845368 191096.89599530573 238404.5722371736 0.6421283673589451 0.8913944047820435 0.9311578316924747 0.9675766980539217 1.0126136093596374 0.619963154214047 0.8209334793560112 0.9394224715695914 0.8015655664741008 1.0 17.86305237919931 -2.377815799781753 2.096765868482785 1.881232663080034 0.8578591358304798 0.11297961773139398 0.1252212141608297 12233496.318866584 1084188.8774106295 51229144.194373526 0.030547023201443806 0.004189712285029504 2.377815799781753 -1.023373527249554 HPELADK ddPTM_BT-474_Trastuzumab_2h_R1 6 HPELADK 7 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;S4R435;Q9NQ39 P46783 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 0 ;;;;; 152.47 0.0018115 12614650000.0 18244100.0 17654300.0 15575870.0 15209740.0 15364510.0 18766600.0 18485400.0 17593440.0 24855800.0 18464700.0 False True 18145875.79271005 18241912.70325028 17768817.108110987 17135291.524510227 17321089.275914416 17469309.113824636 17591190.58091443 18906351.830478124 18730421.14065611 17286267.037575014 1.049727841949133 1.0552835186219205 1.0279152271272367 0.9912661586948407 1.0020144452393167 1.0105888724183043 1.0176396409170705 1.0937209166896211 1.083543433636768 1.0 24.04312301741165 1.756299480227396 24.99999999999945 1.0681200261543273 1.0211682442658798 0.22713949237742903 0.029906565848554032 8.102934295755382 11431.762092595915 0.014035611600437932 0.007783670964484237 57.0557581015625 -1.756299480227396 -0.04695178188844751 HPELNISEEGITK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPELNISEEGITK 13 0 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 ; 130.61 0.00014003 523480000.0 415630.0 435950.0 416650.0 360290.0 345820.0 490720.0 498630.0 421920.0 571850.0 425360.0 False True 413392.2942608345 450460.3322126594 475310.69841327914 405902.677058634 389858.1271642715 456797.68143062806 474509.3619484215 453405.8128663484 430925.2298974164 398213.160630982 1.0381181114300708 1.131204030270848 1.1936087136350126 1.0193100509673454 0.9790186907598138 1.1471184947951416 1.1915963831947332 1.1386007738868094 1.0821471324920577 1.0 18.603181376216725 HPELTKPPPLMAAEPTAPLSHSASSDPADRLS(ph)PFLAAR ddPTM_BT-474_Trastuzumab_2h_R1 3 HPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAAR 38 2 Q9ULP9-2;Q9ULP9 Q9ULP9-2 TBC1D24 TBC1 domain family member 24 1 HPELTKPPPLMAAEPTAPLSHSASSDPADRLS(1)PFLAAR;HPELTKPPPLMAAEPT(0.002)APLS(0.036)HS(0.036)AS(0.036)S(0.036)DPADRLS(0.855)PFLAAR;HPELTKPPPLMAAEPTAPLSHSASSDPADRLS(1)PFLAAR 190.33 5.5644e-24 3119160000.0 1130730.0 1141870.0 1112010.0 1062360.0 952440.0 1372460.0 1068590.0 1004540.0 1631550.0 1404030.0 True False 1124642.2753159124 1179876.452675008 1268571.3422358083 1196854.6670737755 1073727.5884458355 1277585.0706233291 1016898.2192897826 1079503.8757507624 1229476.364149915 1314423.603349441 0.8556163115528936 0.8976379073446511 0.9651160698904135 0.9105547587732951 0.8168809398353324 0.9719736220254726 0.7736457384807317 0.8212754799898212 0.9353730114226025 1.0 20.325998861700942 3.3916640735736197 24.995531937596596 0.8696043505731151 0.9107229871601169 0.0 0.07231741995751975 69.50161183636527 20317.75742060223 0.01972441900076174 0.02670676979822329 2464.1325953515943 -3.3916640735736197 0.04111863658700177 HPENYDLATLK ddPTM_BT-474_Trastuzumab_2h_R1 4 HPENYDLATLK 11 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 0 ;;; 190.46 2.2617e-06 2173710000.0 2668420.0 2769680.0 2521850.0 2291170.0 2144740.0 2843860.0 2841470.0 2429710.0 3895560.0 2886800.0 False True 2654053.5232093316 2861867.1244930825 2876904.5596868517 2581231.8870810457 2417859.9261300666 2647270.651926361 2704017.240630493 2611027.2980173863 2935551.4358296357 2702561.952486175 0.9820509464242922 1.058945983406729 1.0645101241954114 0.9551055378051504 0.8946547641232787 0.9795411533456431 1.0005384846563754 0.9661304140004698 1.0862105984764294 1.0 21.36589625944696 3.7363700444688384 24.998087418724744 0.9783412511540324 1.0375467149526743 0.18294623573212743 0.04955423457868624 295.9298686639763 3377047.7932016933 0.013255173574842844 0.021646129742496294 5449.667988734946 -3.7363700444688384 0.05920546379864189 HPESNTAGMDIFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPESNTAGMDIFAK 14 0 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 ; 132.08 5.2487e-05 1009260000.0 2172950.0 2267010.0 2082310.0 1916460.0 1911950.0 2377630.0 2334310.0 2155370.0 2890500.0 2319680.0 False True 2161251.0786374393 2342466.0574135147 2375481.148237017 2159083.6395009314 2155425.4994844967 2213270.034438997 2221390.507369832 2316214.6541470923 2178175.0057156268 2171636.0364220385 0.9952179105474279 1.078664204372356 1.0938670699860145 0.9942198431456367 0.9925353343444006 1.0191717199929848 1.0229110542067485 1.0665758972959667 1.0030110797499758 1.0 21.050350898779236 3.729006378965154 24.9841278789257 1.0195303149998616 1.0581911771583163 0.2585343082002456 0.03147389402223135 1004.3057223274593 2626240.6788575323 0.008856277023009401 0.013874207420107042 5358.0452741142035 -3.729006378965154 0.03866086215845477 HPFFLDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPFFLDDR 8 0 A0A1B0GV06;A0A1B0GTP7;A0A1B0GUE3;A0A1B0GUG1;A0A1B0GUW4;E7EMM4;A0A1B0GW68;A0A1B0GUA4;A0A1B0GTM3;A0A1B0GTZ5;A0A1B0GUH5;Q13510-3;Q13510;Q13510-2 A0A1B0GV06 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta 0 120.07 0.0015718 114950000.0 15627.0 20900.0 25769.0 20350.0 20280.0 17610.0 21277.0 19584.0 19586.0 18507.0 False True 15542.865968322918 21595.643865683196 29397.051211836755 22926.30791346748 22862.537791022572 16392.662149481068 20247.750223966817 21045.457525536985 14759.292738953907 17325.86741536015 0.8970902059739576 1.246439404617497 1.6967145428906472 1.3232415649875222 1.3195609341183068 0.9461380349100585 1.1686428008802774 1.2146842072033435 0.8518645782703578 1.0 14.080639961898203 2.7602883708512955 22.88709342812802 1.0740924387744877 1.3175298350509435 0.27335596629891823 0.20629934657072324 411.93792398699475 433916.11225889117 0.06554228289116475 0.06943595208913872 575.8221554303998 -2.7602883708512955 0.24343739627645578 HPFIVNHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 HPFIVNHPK 9 0 A0A3B3IRQ9;P55265-3;P55265-2;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 83.005 0.0097424 297400000.0 754800.0 837920.0 835680.0 691730.0 644990.0 704320.0 841280.0 680580.0 1066700.0 780290.0 False True 750736.2406661635 865809.6606666633 953336.4801392256 779302.9470753259 727125.6533447562 655632.0161909434 800584.0723983085 731368.3355152147 803826.0780476931 730491.224160122 1.0277142501325982 1.1852430693635272 1.3050621946010628 1.0668204097473244 0.9953927292976924 0.8975220981535439 1.095953032589509 1.0012007144317185 1.100391149766224 1.0 19.4785074155878 3.493004645500771 20.748399722010102 1.0157517843067776 1.175932172753133 0.424929379650555 0.08196247474221727 68.92160244667772 90030.82723961442 0.02196510133804815 0.03280638477768582 3111.7496222582786 -3.493004645500771 0.16018038844635551 HPGAHQGNLASGLHSNAIASPGS(ph)PSLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HPGAHQGNLASGLHSNAIASPGSPSLGR 28 0 E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;A0A087WWW7;H0Y4U1 E9PGF5 TNS1 Tensin-1 1 HPGAHQGNLASGLHSNAIAS(0.001)PGS(0.996)PS(0.003)LGR;HPGAHQGNLASGLHSNAIAS(0.018)PGS(0.982)PS(0.001)LGR 237.62 5.9684e-45 995180000.0 149758.0 178126.0 175108.0 193472.0 192073.0 211894.0 220765.0 92701.0 214679.0 174861.0 True False 148951.7195676779 184054.81623055896 199761.68433397915 217965.53536286872 216532.35804413573 197246.2665248235 210085.75354580217 99618.81934613989 161774.23700121956 163701.22127396605 0.9098998676277206 1.1243338003112981 1.2202821871418006 1.3314838683951375 1.322729032557142 1.204916279730848 1.2833487246512854 0.6085404774068268 0.9882286506004647 1.0 17.320705559347974 1.7533899654145497 24.999999999887162 0.8344735480409489 1.2074899205891634 0.4986581814430323 0.1523612830377922 3.6189191973624726 6108.915678392855 0.0704587035473018 0.03907322600050186 56.67479598030205 -1.7533899654145497 0.3730163725482145 HPGSFDVVHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 HPGSFDVVHVK 11 0 P62701;C9JEH7;P22090 P62701 RPS4X;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 0 ;;; 192.5 7.9024e-07 3019480000.0 3886770.0 4344160.0 4176610.0 3814980.0 4056440.0 4838860.0 4713830.0 3860530.0 5453100.0 4219910.0 False True 3865844.062180739 4488752.739499828 4764640.384255096 4297956.076841287 4573003.589596432 4504360.997651223 4485804.0343207 4148622.3519741255 4109256.5727963606 3950591.7309532803 0.9785481075889125 1.1362228863919301 1.2060573981673843 1.0879271687748375 1.157549020762255 1.1401737522911075 1.1354764905656987 1.0501268251713423 1.040162297865387 1.0 21.913637329797403 1.607662662321783 3.0839253867651837 1.0241378879207181 1.12530748302338 0.35216769508542733 0.05648504209377535 0.2313803147868899 5.1613440681284946 0.03641643395810957 0.014937199435962313 40.519367951471814 -1.607662662321783 0.10116959510266188 HPHDIIDDINSGAVECPAS ddPTM_BT-474_Trastuzumab_2h_R1 6 HPHDIIDDINSGAVECPAS 19 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 ;;;;; 270.42 2.662599999999999e-39 8689320000.0 3032680.0 3617230.0 3012140.0 3524840.0 3047900.0 2536730.0 2886810.0 562630.0 2851790.0 1526860.0 False True 3016352.3878424247 3737627.3138882923 3436223.1300097755 3971084.3825900103 3436031.9986813418 2361371.8259201124 2747163.971614871 604616.3075772515 2149004.5665281997 1429414.4875893858 2.11020135449257 2.6147960205661245 2.403937528158639 2.7781195846748306 2.4038038151383128 1.6519853733275167 1.9218805989911183 0.422981796271631 1.5034159686966344 1.0 20.446992884976424 2.2803760092849386 1.432572579347706 0.9514005895463971 2.4870378264323625 0.7362825255104413 0.3646190240837355 0.18809381521614849 0.763403608298619 0.20003962076012066 0.12290373154496709 190.71111675989818 -2.2803760092849386 1.5356372368859654 HPHTGDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 HPHTGDTK 8 0 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 ;;; 126.41 0.0012203 137633000.0 263138.0 225434.0 179846.0 174645.0 174875.0 101268.0 186802.0 63034.4 210362.0 113535.0 False True 261721.29424538006 232937.4344122691 205166.75355054482 196755.0390932447 197144.2946846683 94267.58151923052 177765.67360706147 67738.34701019767 158521.10380638335 106289.09909779609 2.462353114918883 2.1915458536151906 1.9302708865917837 1.8511309321778269 1.8547931665436057 0.8868979257458506 1.6724732368227162 0.6373028615838765 1.491414502069764 1.0 16.697634117552496 3.3504845735206024 0.6131627537086722 1.0069858976527242 2.4838649779126376 0.6968979202449199 0.3086473386376042 0.5179232871984849 0.3943817220402587 0.1929570501372198 0.43656925231737326 2241.220434467067 -3.3504845735206024 1.4768790802599134 HPHTGDTKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HPHTGDTKEEK 11 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 93.058 0.0061503 25998000.0 81819.0 72715.0 68059.0 72926.0 61210.0 60128.0 85422.0 21880.0 101270.0 40024.0 False True 81378.49559494547 75135.2748178543 77641.11562056719 82158.42412272874 69004.73067990589 55971.49288608732 81289.81151627074 23512.796704388762 76313.36544847654 37469.63405372966 2.1718518915410976 2.0052310815236125 2.0721076568090724 2.1926668406987244 1.8416174169450499 1.4937827470059324 2.1694850662193566 0.6275160486134597 2.0366722914626507 1.0 15.193434267239226 2.2979516843343037 0.7671400228202541 1.179365526825816 2.125309528414446 0.3800946756310548 0.4088291411755422 0.6276456231945791 0.7161699331999811 0.31296533481308275 0.2013580548670536 198.58739747378527 -2.2979516843343037 0.94594400158863 HPHVYS(ph)PVIQGNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPHVYSPVIQGNAR 14 0 F8VZC1 F8VZC1 ATXN2 1 HPHVY(0.444)S(0.556)PVIQGNAR 63.283 0.07375599999999999 66806000.0 4327.3 5582.7 5427.7 4495.0 4017.7 4195.1 5789.5 5947.0 5219.8 4449.1 True False 4304.002297608229 5768.516794686583 6191.872981585868 5064.066539117266 4529.330280226397 3905.1026112031827 5509.439766962254 6390.795338254109 3933.4502317365245 4165.154628933856 1.0333355375836104 1.384946612693497 1.4865889824529241 1.2158171761353078 1.087433885110229 0.9375648587151643 1.3227455539561785 1.5343476791616606 0.944370757429325 1.0 12.024154340458216 1.19621021773267 24.99683214089299 0.9721839360237534 1.2626981128625978 0.2677368117057016 0.183099076328018 229.4990259254297 135454.03696276253 0.1903923173279548 0.04759956548142861 15.711231133651625 -1.19621021773267 0.2905141768388444 HPLLSSGGPQS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 6 HPLLSSGGPQSPLR 14 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 HPLLSSGGPQS(1)PLR;HPLLSSGGPQS(1)PLR;HPLLSSGGPQS(1)PLR;HPLLSSGGPQS(1)PLR;HPLLSSGGPQS(1)PLR;HPLLSSGGPQS(1)PLR 243.61 9.822e-18 4406870000.0 1632050.0 1976160.0 2001910.0 1961900.0 1743820.0 1980140.0 2084500.0 1649690.0 2274950.0 2059350.0 True False 1623263.2241378026 2041935.2909860516 2283761.5270863487 2210276.3388418593 1965885.1405690839 1843257.582548179 1983664.7714367087 1772798.2447560837 1714319.0552682106 1927920.5199017606 0.841976216021871 1.0591387299981125 1.184572446587539 1.1464561510837006 1.019692005077708 0.9560858777736876 1.0289141854965 0.9195390714791597 0.8892062912197053 1.0 20.87861414583648 2.9128533794110076 3.9700168031843357 0.9573467793731323 1.0687312353057048 0.20230255407685382 0.09181495873767688 0.3590480650243331 10.376823675065038 0.030006025309412335 0.0325988688808869 818.1885158367011 -2.9128533794110076 0.11138445593257251 HPNILAYIDGLETEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPNILAYIDGLETEK 15 0 E9PS17;Q96KG9-2;Q96KG9;Q96KG9-3;E9PK59;Q96KG9-4;Q96KG9-5;Q96KG9-6 E9PS17 SCYL1 N-terminal kinase-like protein 0 ; 137.52 1.6235e-05 365970000.0 332810.0 300630.0 299720.0 309920.0 267903.0 351640.0 362320.0 301230.0 476720.0 322130.0 False True 331018.1879386673 310636.2878153275 341917.970787058 349155.8402231861 302018.859064513 327331.9544715236 344793.19740318885 323709.3122149459 359238.7437207246 301571.38761063205 1.09764454300968 1.0300588868079203 1.1337878354312534 1.157788353164299 1.0014837994327854 1.085421123883781 1.1433219846717082 1.0734085709513557 1.191222902699737 1.0 18.202140029998255 2.434947501485704 24.998611160934065 1.1067366298442447 1.0835414062550284 0.016591146466700124 0.062297614810676735 635.8626993716475 376906.3178645331 0.0208540597481819 0.017447784334249466 272.2372201583294 -2.434947501485704 -0.02319522358921633 HPNQATPK ddPTM_BT-474_Trastuzumab_2h_R1 1 HPNQATPK 8 0 Q96F86;H3BPW9;H3BQ37 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 97.431 0.0082369 58005000.0 76086.0 79113.0 71139.0 73731.0 79730.0 66726.0 79353.0 70677.0 115980.0 80521.0 False True 75676.36142994933 81746.22838018167 81154.7528487273 83065.33704019024 89883.14290326565 62113.38867610875 75514.39223210224 75951.27663053393 87398.28305237794 75382.08084250367 1.003903853331676 1.0844252037957756 1.0765788360006208 1.1019241723207303 1.1923674950159462 0.8239808185433711 1.0017552100992677 1.007550810241223 1.1594039601398085 1.0 16.20193399917001 HPNYS(ph)PPGS(ph)PIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPNYSPPGSPIEK 13 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 2 HPNYS(1)PPGS(1)PIEK;HPNY(0.004)S(0.997)PPGS(0.999)PIEK 124.3 0.0001156 1397940000.0 1431670.0 1260580.0 895200.0 1088500.0 1089980.0 1387220.0 1355270.0 1170090.0 1812310.0 1381480.0 True False 1423962.0477934892 1302537.6432632974 1021236.378782112 1226303.9883935794 1228782.4921823859 1291324.7465646304 1289710.412465832 1257408.0573966282 1365690.484209821 1293312.7636554665 1.1010190943826694 1.0071327523141096 0.7896283153470567 0.9481882672583459 0.9501046666463804 0.998462848935924 0.9972146326156616 0.972238187646617 1.055963045125901 1.0 20.302639775648224 2.733285157228261 11.00838380210749 0.9999008040904386 0.951837912267596 0.0795044129988377 0.07453744183512455 0.704617458983699 1378.8803212025166 0.024763311838503235 0.024385750245206922 541.1094981669524 -2.733285157228261 -0.048062891822842624 HPNYS(ph)PPGSPIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HPNYSPPGSPIEK 13 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 HPNYS(1)PPGSPIEK 156.17 3.0302e-05 826190000.0 835340.0 757110.0 653280.0 668140.0 703240.0 918140.0 1042800.0 892050.0 1338500.0 913830.0 True False 830842.6222549981 782309.9486673399 745256.1455884478 752726.4554940633 792793.445569956 854671.1428690839 992355.7801171497 958619.3007381166 1008644.6099810994 855508.5870307757 0.9711680687374674 0.9144384527834054 0.8711264350659735 0.8798584454968014 0.9266925634510742 0.9990211154225835 1.1599600461771298 1.1205256326709805 1.1789999834856302 1.0 19.70642281004518 2.4707952063574763 2.810172061151374 1.125813095097148 0.9088405277660963 0.766902219798103 0.052150783892940984 0.11269841094817715 1.8169429356833122 0.018619430195139605 0.01583140243172205 295.6617930434685 -2.4707952063574763 -0.21697256733105186 HPPDEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPPDEDFR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 68.735 0.055739 190950000.0 192390.0 178560.0 190320.0 162410.0 176680.0 204610.0 173700.0 168060.0 217360.0 190060.0 False True 191354.19361653857 184503.2616582007 217115.40170890457 182971.08934772736 199179.15073559494 190465.7923001321 165297.46740156214 180601.49059138828 163794.54047477903 177930.20808144746 1.0754452303509154 1.0369417517555222 1.220227886259314 1.0283306658303488 1.1194229067861303 1.070452254026177 0.9290017090627878 1.015013091586551 0.9205549874915122 1.0 17.440951939227414 2.358124918980943 5.564211793327944 0.9716326155869274 1.0957304452363672 0.5464986506918721 0.05630563093324602 0.15884601429699766 7.12776342072237 0.01888878638113659 0.015673939413123776 228.0998076143753 -2.358124918980943 0.12409782964943983 HPPEQTNGVHT(ph)PPHVASALAGAVS(ph)PGALR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPPEQTNGVHTPPHVASALAGAVSPGALR 29 0 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 2 HPPEQTNGVHT(1)PPHVASALAGAVS(1)PGALR 201.93 6.4905e-25 500820000.0 110660.0 111220.0 111730.0 114620.0 123150.0 112990.0 113870.0 66386.0 129750.0 92585.0 True False 110064.21885548193 114921.89046609022 127460.61282543051 129130.88024774675 138832.42253276287 105179.2672498506 108361.67307435728 71340.06042127743 97774.85106092464 86676.14603399366 1.269832865115111 1.3258767922263042 1.4705385351979254 1.489808743885575 1.6017373739519285 1.2134742032554167 1.2501902545581427 0.8230645187350446 1.1280479755361776 1.0 16.403347386450633 2.151048061024302 2.0316080324221026 0.9749937350797606 1.4237623929094265 0.6774593701994467 0.12654304586501156 0.17800206499481674 1.4473405173194744 0.06528386417619934 0.03938134698535637 141.5950466876437 -2.151048061024302 0.4487686578296659 HPPGDEIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 HPPGDEIYR 9 0 O95251-4;O95251;O95251-2;E7EUP3;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 ; 111.61 0.0020974 160530000.0 33323.0 27772.0 21510.1 27076.0 24042.3 21612.0 24469.0 27899.0 23719.0 26489.0 False True 33143.592670533355 28696.37423147147 24538.535110859153 30503.818823835172 27103.94439512337 20118.013309175763 23285.340989342654 29980.965048251466 17873.77026831654 24798.449341626143 1.3365187562312306 1.157184218906073 0.9895189321240864 1.2300696065149572 1.0929693232724544 0.8112609394251962 0.9389837513048198 1.2089854746653883 0.7207616098121915 1.0 14.597962290601563 7.999999999510803 0.41214549266809225 0.9730434839971146 7.086837876814629 0.3791466377812057 0.14464426276245784 90.44679530822005 1.1774127986287333 0.0991646485479259 453.1437470159405 99999999.8873582 -7.999999999510803 6.113794392817514 HPPLYQAGLTPPLS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HPPLYQAGLTPPLSPPK 17 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 HPPLYQAGLTPPLS(1)PPK;HPPLYQAGLTPPLS(1)PPK 107.78 0.00044293 1542430000.0 816190.0 688400.0 587040.0 603820.0 600540.0 847980.0 883490.0 814470.0 1212090.0 801200.0 True False 811795.7237272343 711312.9778534122 669690.1293568496 680263.5500889404 677015.2093205466 789361.1385302072 840752.2134404486 875249.8871948583 913386.6606738803 750066.730058169 1.08229800255809 0.9483329273893385 0.8928407333903664 0.9069373734736705 0.9026066377694727 1.0523878835007 1.1209032206711085 1.1668960268734772 1.2177405343695826 1.0 19.516659425833954 2.4571898222766704 2.7612454264057513 1.1435549553939934 0.9419722886456339 0.5735397925270445 0.0724944633773217 0.17637063127362465 2.7476443860629147 0.02706233841852189 0.022763298176481796 286.543012401033 -2.4571898222766704 -0.20158266674835956 HPPLYSDHSPLCADSLGQEPGAASFQNDS(ph)PPQVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPPLYSDHSPLCADSLGQEPGAASFQNDSPPQVR 34 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 HPPLYSDHSPLCADSLGQEPGAASFQNDS(1)PPQVR 316.64 2.5589999999999994e-104 947460000.0 124860.0 173040.0 194680.0 209370.0 204400.0 231390.0 224160.0 168370.0 186630.0 170020.0 True False 124187.76763325023 178799.5317951112 222089.25181110518 235876.22053281037 230429.1284262825 215394.553933471 213316.52442564274 180934.62436553635 140637.53721387556 159169.17803855456 0.7802249729729018 1.1233301195524281 1.3953031268233973 1.4819214589125764 1.4476994306678337 1.3532428613867524 1.3401873846076682 1.1367441020629614 0.8835726800059859 1.0 17.280201469891384 1.4697416293072283 3.4786682913948206 0.9467452591401757 1.2899244910946244 0.31474659920707204 0.19378256501373675 0.27186215488238996 6.414616527834019 0.14925379552459891 0.05409235748596646 29.494540139387905 -1.4697416293072283 0.34317923195444866 HPQGEQMYR ddPTM_BT-474_Trastuzumab_2h_R1 6 HPQGEQMYR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;; 151.22 8.3386e-05 1900173000.0 41187.6 52077.2 48267.2 61957.8 56459.1 51657.8 64584.3 52081.7 71093.3 69869.7 False True 40965.85053797255 53810.55812066781 55062.80221397675 69801.65112732371 63648.83172569633 48086.81787538123 61460.11067301493 55968.3009195139 53573.30881641338 65410.55592754033 0.6262880655433226 0.8226586268472842 0.8418030000383044 1.0671312930690835 0.973066668263826 0.7351537866250554 0.9396053863400646 0.8556463116062453 0.8190315470756759 1.0 15.997235855569823 4.730573005829102 1.8706417707681557 0.9009651136710324 0.5439180982079302 0.46287561824968115 0.09112862966401415 0.7537780376121875 2.7596397554743475 0.023855900979057557 0.46827807207375044 53774.08209042732 -4.730573005829102 -0.35704701546310214 HPQHLHQQHHGDAAQHTR ddPTM_BT-474_Trastuzumab_2h_R1 4 HPQHLHQQHHGDAAQHTR 18 0 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 0 ;;; 61.102 0.019165 46113400.0 10011.3 11924.199999999999 13127.0 16397.3 13497.0 11701.27 13322.0 1366.35 10835.0 3333.34 False True 9957.400273159998 12321.089788668882 14975.167498070576 18473.19649874694 15215.762947013387 10892.388746726769 12677.563965017904 1468.3139751847152 8164.859431561601 3120.603387384048 3.1908573557971835 3.9483036641184497 4.7988051152581805 5.9197514728818925 4.875904130761237 3.490475204494886 4.062536116018673 0.4705224576505954 2.616436124042688 1.0 11.607609294462012 1.817849219947131 6.109120381510659 1.3864104521934455 4.399910041137101 0.7044053205796761 0.880326299311382 0.12516885633249158 7.250595152763596 0.41809981292881065 0.24636729361014983 65.74295487725827 -1.817849219947131 3.0134995889436555 HPSAVTACNLDLENLVTDSNR ddPTM_BT-474_Trastuzumab_2h_R1 3 HPSAVTACNLDLENLVTDSNR 21 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ;; 279.56 6.259e-45 2101030000.0 563403.0 854950.0 894700.0 955440.0 895960.0 913330.0 866990.0 823840.0 849530.0 981290.0 False True 560369.7008479573 883406.4939218123 1020665.9831281892 1076398.6060365287 1010055.1952290237 850193.6468475617 825050.3814765707 885319.1241747548 640174.7146187852 918663.2320753628 0.609983812655721 0.9616216945203068 1.1110338886888842 1.1717009764337951 1.0994836409716717 0.9254682425102388 0.8980988382572902 0.963703665569286 0.6968546168682065 1.0 19.80917656287479 2.5011924849620972 19.098793276053893 0.8973651170792216 1.0065392644873612 0.07638471612862996 0.16163220927701208 101.7144091419517 80703.23494962952 0.05463072049040476 0.05100488100701736 317.0972567918654 -2.5011924849620972 0.10917414740813958 HPSKPDPSGECNPDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 HPSKPDPSGECNPDLR 16 1 Q09028-3;Q09028;Q09028-2;Q09028-4 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 ;;;;; 207.53 1.0331e-11 7078850000.0 1803380.0 2612080.0 2807870.0 2780310.0 2748760.0 3048320.0 2991350.0 2920190.0 3096500.0 3120150.0 False True 1793670.8024543554 2699021.5037642987 3203193.689556444 3132296.9609283954 3098798.2928230334 2837596.813373433 2846646.9724332914 3138109.4062243616 2333409.065974203 2921019.35570519 0.6140564590751673 0.9239998695978183 1.0966013228567366 1.0723300942222613 1.0608619510756114 0.9714406061127873 0.9745388940588025 1.0743199630276883 0.7988338253961598 1.0 21.478040487329462 4.699197528112003 3.217109481822608 1.013341515705503 0.5736857186127431 0.6725500845367498 0.08160944031231777 0.16085385768884472 2.7100305999651884 0.019276532341141732 0.1672450030464486 50026.20150553562 -4.699197528112003 -0.4396557970927599 HPSSPCSVKHS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HPSSPCSVKHSPTR 14 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 HPSSPCS(0.016)VKHS(0.977)PT(0.007)R;HPSSPCS(0.002)VKHS(0.997)PT(0.001)R 183.74 8.2947e-07 103748000.0 35016.0 68425.0 70764.0 83866.0 82908.0 86088.0 94244.0 62981.0 89166.0 79508.0 True False 34827.47774664334 70702.48476121399 80726.95610828571 94483.42700102538 93465.84236578405 80136.93918935428 89685.0576729579 67680.96203103774 67192.23406318622 74433.73136977649 0.4678991245733099 0.949871563068279 1.084548021746288 1.269363032892235 1.2556920181988278 1.0766212806294104 1.2048980485395113 0.9092781026226949 0.9027121551838437 1.0 16.18366893974842 4.734786004459599 2.4320557333842485 1.09243666637526 0.32783358781660166 0.6984236493020604 0.12215755040887137 0.32261653666120427 2.358305966092357 0.033675145055477404 0.514513944344368 54298.27146648 -4.734786004459599 -0.7646030785586584 HPTLLQDPDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 HPTLLQDPDLR 11 0 O60749;O60749-2;D6RC15 O60749 SNX2 Sorting nexin-2 0 ;;;;; 166.04 2.0888e-05 2094410000.0 755778.0 1021098.0 1109277.0 1162872.0 1061314.0 1045795.0 1091299.0 882877.0 1100980.0 1022855.0 False True 751708.9752228304 1055084.6296632243 1265453.5595914724 1310091.4759680482 1196466.04699908 973501.6531866294 1038508.6982029785 948761.7648985673 829658.2313761605 957575.518189777 0.7850127336629058 1.1018291608559299 1.3215182881698095 1.3681338454064442 1.2494743487812923 1.0166317274140002 1.0845188483579857 0.9907957616670574 0.8664154582236665 1.0 19.869026742593647 2.0823107946038997 1.422741054733777 0.9464706307099306 1.1724025137743044 0.22868962895383427 0.15748607388303146 0.6365799216392494 2.4296082824667717 0.11062201463182166 0.056220557459252044 120.86784935071756 -2.0823107946038997 0.22593188306437373 HPTPGSSDPLIQPSSPAVCPEPPSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 HPTPGSSDPLIQPSSPAVCPEPPSSPK 27 0 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9 A0A0G2JQJ7 MAPT Microtubule-associated protein tau 1 HPTPGSSDPLIQPSSPAVCPEPPS(0.069)S(0.931)PK;HPTPGSSDPLIQPSSPAVCPEPPS(0.106)S(0.894)PK;HPTPGSSDPLIQPSSPAVCPEPPS(0.086)S(0.914)PK;HPTPGSSDPLIQPSSPAVCPEPPS(0.089)S(0.911)PK 227.49 7.7634e-35 5285570000.0 2073780.0 2089330.0 1940290.0 1979770.0 2046840.0 2782450.0 2547020.0 2557020.0 3367020.0 2477980.0 True False 2062614.9988986177 2158872.086023346 2213465.9666969883 2230408.679009606 2307492.941428827 2590105.7806827705 2423810.9120387267 2747837.8166844705 2537263.0367564894 2319833.194894587 0.8891221159512473 0.9306152230145344 0.9541487601644427 0.9614521785093068 0.9946805427679378 1.116505180796184 1.0448212041163003 1.184498015948656 1.0937264982415178 1.0 21.14558964297445 3.013812309417309 1.341596867432506 1.108016909106371 0.923182710307603 0.6755625342755696 0.04973959363124439 0.21678829966864557 0.8135089566211239 0.01887946653953452 0.02296898048282747 1032.315170043546 -3.013812309417309 -0.18483419879876795 HPVSCK ddPTM_BT-474_Trastuzumab_2h_R1 1 HPVSCK 6 0 E9PF18;Q16836;Q16836-3;Q16836-2;A0A0A0MSE2;A0A0D9SFP2;A0A1W2PQV5;A0A1W2PNM1;A0A1W2PQC2;A0A1W2PRT2;A0A1W2PQ78 E9PF18 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial 0 69.432 0.093518 42469000.0 153700.0 162950.0 166280.0 132700.0 160530.0 160280.0 150880.0 133070.0 210760.0 195370.0 False True 152872.49627767544 168373.69224464498 189690.77866833075 149499.8063939623 180972.54396414483 149200.22085853646 143581.35798242764 143000.35911576828 158821.02203930976 182901.31933532763 0.8358195382801042 0.920571228553863 1.0371208876878326 0.8173795953864735 0.9894545573635442 0.8157416327052062 0.7850208981772758 0.7818443280531743 0.8683426812691847 1.0 17.480705956257555 2.7131807857557897 24.288588939627648 0.8269439187721022 0.9208949577629412 0.11696223572040021 0.08470036691220129 783.4106880200702 749725.7303094945 0.026109167289547576 0.024626044895514523 516.6313850322452 -2.7131807857557897 0.09395103899083901 HPVSLEQYLMEGSYNK ddPTM_BT-474_Trastuzumab_2h_R1 1 HPVSLEQYLMEGSYNK 16 0 K7EJR3;R4GMR5;P48556;K7EJC1 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 160.81 8.6516e-09 476100000.0 348940.0 349950.0 365780.0 340210.0 353440.0 343630.0 426640.0 358660.0 472000.0 394940.0 False True 347061.3458108788 361597.8742007581 417278.6445832454 383280.55111748294 398448.4889969929 319875.66691801127 406001.7932769276 385425.03043857723 355681.92447596445 369734.59107485437 0.9386769704233995 0.9779930872833889 1.1285896820478059 1.036636983310783 1.0776608373013312 0.8651494197178079 1.09808982734518 1.0424370338682925 0.9619925564496482 1.0 18.49613049777706 1.2396190511760816 24.99983618024022 0.9809962748749652 1.0247663075726003 0.041348574334849064 0.07430045476963475 92.54181713156808 2186268.3378516436 0.05607912522083182 0.01781287012532763 17.362771554210692 -1.2396190511760816 0.04377003269763513 HPWDDISYVLPEHMSM ddPTM_BT-474_Trastuzumab_2h_R1 4 HPWDDISYVLPEHMSM 16 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ;;; 222.29 9.7781e-15 393587000.0 182381.0 317616.0 320497.0 360511.0 351171.0 320706.0 359539.0 261141.0 332854.0 323652.0 False True 181399.08096043402 328187.65655707364 365620.19179013727 406151.6556359745 395890.54529641 298536.3490807198 342146.72499764105 280628.66746712907 250826.5917150906 302996.2522675821 0.5986842398309166 1.0831409765004105 1.2066822247928357 1.3404510867589667 1.306585617259685 0.985280665508286 1.1292110791373233 0.926178675039519 0.8278207728245449 1.0 18.208940423684833 1.6800749009184264 4.607146043926347 0.902544498742458 1.110673119193615 0.13483417007946208 0.1986827419994877 0.3031007969094485 14.932306180193217 0.1125050857474807 0.054005286032806694 47.871264673354425 -1.6800749009184264 0.208128620451157 HPWIVHWDQLPQYQLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 HPWIVHWDQLPQYQLNR 17 0 B4DG22;B1AXG1;B7ZB17;P51812;A0A2R8Y603 B4DG22 RPS6KA3 Ribosomal protein S6 kinase alpha-3 0 79.805 0.007380199999999998 246450000.0 93579.0 109620.0 95405.0 107240.0 105770.0 104780.0 116380.0 69678.0 122630.0 104730.0 False True 93075.18106160422 113268.63543331061 108837.19472487431 120816.57300443514 119239.18255209354 97536.80522558917 110750.2547852262 74877.72617771481 92409.47965781267 98046.04173613599 0.9493007510909061 1.155259645648338 1.1100620973336155 1.2322432488358865 1.2161549863786758 0.9948061492179634 1.129573951422538 0.7636996338845341 0.9425110695086235 1.0 16.581171767407795 1.7557609133753214 24.999999999970612 0.8828926496359144 1.118105118622001 0.4797468687314643 0.09969503281383697 4.904316111090508 7136.0295057800795 0.045279708437531 0.025110111769140544 56.98504733699908 -1.7557609133753214 0.2352124689860866 HQADACHAYQIIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQADACHAYQIIHR 14 0 Q99538-3;Q99538-2;Q99538;G3V2T4;G3V4E4;G3V4P5;G3V3Z4 Q99538-3 LGMN Legumain 0 ; 215.96 2.1924e-12 504890000.0 129175.0 143087.0 145228.0 144820.0 149714.0 141931.0 143091.0 59057.0 136677.0 115403.0 False True 128479.53615269181 147849.56429708202 165674.84005559504 163154.19715127084 168779.19047559917 132119.64403963662 136169.14166929698 63464.13322536961 102994.78472796909 108037.881738521 1.1892082118348524 1.3684974373610486 1.5334884152631765 1.5101573126558079 1.5622223220193034 1.2229010964820615 1.2603832977664329 0.5874248199253745 0.9533210302775329 1.0 16.721177733249625 1.9187442114335715 4.570926838134808 0.8152184776471055 1.4046949322135993 0.7139434959579256 0.1553692053005856 0.111370300086972 4.032746127210025 0.07354791865620534 0.0431895013048761 82.93621501142299 -1.9187442114335715 0.5894764545664938 HQAFEAELHANADR ddPTM_BT-474_Trastuzumab_2h_R1 4 HQAFEAELHANADR 14 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;;; 186.95 5.805100000000001e-07 1131540000.0 495586.0 590091.0 529683.0 534775.0 564074.0 630978.0 616456.0 513561.0 696780.0 533460.0 False True 492917.8200407804 609731.8222174583 604257.7623128294 602477.4601682837 635905.4803714631 587359.9760224452 586635.6681893918 551885.5296299173 525067.9053736494 499414.12608191604 0.9869921459929428 1.2208942246007823 1.2099332613065021 1.20636847999262 1.273302950720219 1.176098042381172 1.1746477273115206 1.1050659178579076 1.051367748631775 1.0 18.92987710335232 1.3888104714875178 1.4762277273054698 1.0049262316139411 1.187992680215051 0.43382643758017403 0.07066489110919659 0.33451182799153234 1.3629547248771154 0.06288244005037034 0.020005213352329035 24.47994690286574 -1.3888104714875178 0.18306644860110977 HQAFEAELSANQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQAFEAELSANQSR 14 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 207.4 9.4935e-09 439680000.0 261960.0 285840.0 295230.0 305940.0 298980.0 302250.0 306440.0 261020.0 332190.0 315540.0 False True 260549.6364664924 295354.01160607085 336795.81781483773 344671.97263126523 337053.3308067025 281356.16891996906 291616.32648551883 280498.6378327032 250326.22561794636 295401.967052615 0.8820172697769648 0.9998376603682683 1.140127200828185 1.1667897003877248 1.1409989383945733 0.9524519140045394 0.9871847821296941 0.9495489844952273 0.8474087972926732 1.0 18.172319907335737 2.7024052857888265 16.368367524439666 0.9480209660330988 1.072002779911917 0.3209013117984785 0.08606315809676456 12.954736781346128 5863.838717118841 0.030001743525190167 0.02829982918315374 503.970697391867 -2.7024052857888265 0.12398181387881813 HQALQAEIAGHEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HQALQAEIAGHEPR 14 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;; 152.34 3.8702e-06 771510000.0 1542970.0 1910797.0 1676178.0 1822341.0 1835714.0 1929933.0 1992855.0 1794991.0 2060004.0 2044471.0 False True 1534662.8209600812 1974396.7230438206 1912169.2927996472 2053049.1837511663 2069481.2967706711 1796521.274283617 1896452.990204606 1928942.3431996093 1552343.6168393737 1913991.1104203134 0.8018129303761857 1.0315600277841637 0.9990481577418266 1.0726534583017555 1.081238719189355 0.9386257148754991 0.9908368852288681 1.007811547659703 0.8110505886824513 1.0 20.868152698530395 -0.13436698069990072 7.347985119398354 0.9999999948977181 0.9814673438714945 0.0 0.09220758434956772 0.0 0.0 0.08544959392608088 0.020140662288196578 0.7338934629476336 0.13436698069990072 -0.01853265102622359 HQAS(ph)DS(ph)ENEELPKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HQASDSENEELPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR 86.83200000000002 0.004213399999999999 3347480000.0 4190790.0 3118680.0 1795640.0 2693350.0 2578180.0 3415200.0 2763530.0 2080630.0 4032620.0 2258050.0 True False 4168227.2522805403 3222483.3785181255 2048450.5040173286 3034327.8338446063 2906495.9409299116 3179115.262516055 2629847.4961902024 2235897.1758250645 3038834.835339546 2113939.315786133 1.9717818866197951 1.5243972967690165 0.9690204864067016 1.435390226760695 1.3749192889432789 1.5038819888421457 1.2440506104179312 1.0576922237682957 1.4375222659641307 1.0 21.011502531630857 4.601838962574574 3.4295428488969018 1.2619328316216518 1.9775263873547668 0.5887820902813595 0.18369229650713564 0.17721621853995817 3.4004661362851176 0.0446741340631496 0.26005496298566055 39979.64767896209 -4.601838962574574 0.715593555733115 HQAS(ph)DS(ph)ENEEPPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQASDSENEEPPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 HQAS(1)DS(1)ENEEPPKPR 111.45 0.0004789 593810000.0 1100100.0 832410.0 432710.0 701410.0 678580.0 970520.0 744010.0 558420.0 1009100.0 649450.0 True False 1094177.1838325998 860116.263647528 493631.80681725626 790208.4340828134 764993.1407412275 903430.2367583397 708019.3939057918 600092.1359993033 760420.8262472374 608001.5449778805 1.7996289530356482 1.4146613125445586 0.8118923560222447 1.299681621880684 1.258209205322099 1.485901218871421 1.1645026229851931 0.9869911367102447 1.2506889703296757 1.0 19.213715464107473 4.571572353978882 3.898233039340523 1.164876893586864 1.7776077342365808 0.5421408091758777 0.18134236707839088 0.1812971086215295 4.635829583162217 0.0449937056626531 0.22414381427258864 37288.28024882002 -4.571572353978882 0.6127308406497167 HQAS(ph)DSENEELPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQASDSENEELPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 1 HQAS(0.984)DS(0.016)ENEELPKPR 205.24 2.7235e-09 886290000.0 128350.0 122380.0 112810.0 88365.0 106560.0 150190.0 145510.0 105800.0 140590.0 117040.0 True False 127658.97786102557 126453.34431972782 128692.6674379023 99551.99993973253 120129.78436939657 139807.71880923142 138471.12539781962 113695.33324151426 105943.47830948276 109570.4069970147 1.165086279769899 1.1540830027506708 1.1745203012836176 0.9085664885998359 1.096370705026856 1.2759623938700944 1.2637639048068183 1.0376463532221063 0.9668986472996239 1.0 16.74149867927237 1.5386561609041516 6.41180273644175 0.9894682402613378 1.1439064753965493 0.3388703506128239 0.09571652257179793 0.16668395875700356 13.728534086827338 0.05796550214626905 0.02657142066081304 34.56655995171847 -1.5386561609041516 0.1544382351352115 HQASDS(ph)ENEELPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQASDSENEELPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 1 HQAS(0.286)DS(0.714)ENEELPKPR 290.57 4.0611e-44 685190000.0 138480.0 153050.0 130700.0 113630.0 135610.0 189260.0 162170.0 139720.0 163910.0 159570.0 True False 137734.43906657427 158144.17672932136 149101.4239352345 128015.54634925368 152879.12967655668 176176.9016701188 154325.21755043915 150146.6158837842 123516.5767814731 149386.10598524983 0.9220030079649708 1.0586270770384516 0.9980943204313563 0.8569441281366137 1.0233825205380997 1.1793392732756167 1.0330627238230374 1.0050909011485276 0.8268277425590633 1.0 17.188686447474886 1.384614725870588 11.436102401860314 0.9135648144776324 1.013120585317257 0.158881729280274 0.08838372479777558 0.8017018923809806 93.80636878733975 0.06004541438934438 0.02199969185312989 24.244583396224634 -1.384614725870588 0.09955577083962452 HQAVHTADRPHCCPDCGQAFR ddPTM_BT-474_Trastuzumab_2h_R1 3 HQAVHTADRPHCCPDCGQAFR 21 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 0 ;; 85.927 0.0018239 194737000.0 42529.9 47032.7 44902.4 47107.0 46751.2 49440.0 43651.2 15341.5 59651.0 42196.1 False True 42300.9237439161 48598.154987632435 51224.26762134261 53070.7413700105 52704.688203927704 46022.32916924157 41539.62469222257 16486.360632558506 44950.81033244866 39503.10877210129 1.0708251846191594 1.230236214268646 1.2967148463393667 1.3434573384131032 1.3341908989489433 1.1650305659423044 1.0515533076616885 0.41734337233230234 1.1379056415983837 1.0 15.269678572930607 1.9847171685064307 6.672163467794084 0.773023431690631 1.2409231116786972 0.43662199930273016 0.19201426219631149 0.11639127051785836 23.797057857131666 0.07754257219179563 0.051315577461873575 96.5421949371444 -1.9847171685064307 0.46789967998806614 HQCSIDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQCSIDLK 8 0 Q5TDH0;Q5TDH0-3;Q8WTU0 Q5TDH0 DDI2;DDI1 Protein DDI1 homolog 2;Protein DDI1 homolog 1 0 104.05 0.0046554 272150000.0 234450.0 230070.0 208170.0 218250.0 207490.0 255860.0 244450.0 209970.0 326280.0 243580.0 False True 233187.747249844 237727.7408697481 237478.52655392344 245880.42762232348 233912.6216104178 238173.00042965522 232625.01961031588 225639.02760605613 245872.66592800387 228034.5158606702 1.0225984709802547 1.0425077097319797 1.0414148299331298 1.0782596954425847 1.025777263268948 1.0444603069439702 1.020130740876309 0.9894950628611078 1.0782256580763978 1.0 17.79889268519621 2.214932217775632 6.2973606489531555 1.0174858245777612 1.0433559714222842 0.12126817912713383 0.025973851823474378 0.29083856635488636 38.339725890477006 0.009461513714106449 0.0071581425314372945 164.0333739215148 -2.214932217775632 0.025870146844523045 HQDDLQDVIGR ddPTM_BT-474_Trastuzumab_2h_R1 4 HQDDLQDVIGR 11 0 E5RG17;Q6P1N9;H0YBX2;G5EA19;U3KQS5;E5RID7 E5RG17 TATDN1 Putative deoxyribonuclease TATDN1 0 ;;; 175.48 9.775e-06 1549010000.0 1126530.0 1133890.0 1062030.0 1082126.0 924850.0 1225170.0 1097770.0 828871.0 1306950.0 1125690.0 False True 1120464.88764925 1171630.843199019 1211554.5926697566 1219123.0406471202 1042624.1654845775 1140476.8816399623 1044666.6712113561 890725.5629416544 984869.6847327577 1053847.500448305 1.063213498321727 1.111765072935704 1.1496488743906148 1.1568306041704397 0.9893501337157862 1.0822029574058916 0.9912882753595341 0.8452129578167061 0.93454668186222 1.0 20.007234682727418 2.1061287193778764 2.9452644977478055 0.9100030837278119 1.0956114364239053 0.627573621336347 0.057302256123269266 0.15270940004319225 2.6276419527711896 0.026137050934537415 0.01705973955995752 127.68171851601026 -2.1061287193778764 0.18560835269609344 HQDRLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 HQDRLSPK 8 1 Q8IVM0-2 Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 1 HQDRLS(1)PK;HQDRLS(1)PK;HQDRLS(1)PK 75.941 0.022461 1704150000.0 1572180.0 1236990.0 1063880.0 1073210.0 1084320.0 1403380.0 1378740.0 1092680.0 2072390.0 1343450.0 True False 1563715.5575656197 1278162.4643737557 1213665.056589269 1209078.2759612994 1222401.724731833 1306367.6438011788 1312045.0789017244 1174221.3301166138 1561677.2531032728 1257709.8708145872 1.243303876237244 1.0162617739065067 0.9649801474510242 0.9613332168397547 0.9719266367370671 1.0386875972875025 1.043201702831469 0.9336186010499384 1.2416832286541677 1.0 20.262367728257562 4.737692361045481 6.4165440054335185 1.0100159938244293 1.248129344895956 0.39800209587931823 0.08208594593038714 0.10986786337568635 26.618477317980204 0.01852181039967836 0.1143583512105702 54662.861321079625 -4.737692361045481 0.23811335107152676 HQDVPSQDDSKPTQR ddPTM_BT-474_Trastuzumab_2h_R1 4 HQDVPSQDDSKPTQR 15 1 Q9NRN7 Q9NRN7 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0 ;;; 167.71 7.783400000000002e-07 1621890000.0 2581480.0 2509310.0 2175980.0 2205970.0 2266570.0 2752010.0 2714880.0 2405120.0 3421970.0 2690480.0 False True 2567581.5985093876 2592830.866440075 2482339.0700427815 2485245.5758168004 2555204.2544870838 2561770.026234717 2583550.882551252 2584602.2673518937 2578671.3455487657 2518771.2629641867 1.0193786296766618 1.0294030682995534 0.9855357278935561 0.9866896658540038 1.0144645891663944 1.0170713251746122 1.0257187385530315 1.0261361582751403 1.0237814697449288 1.0 21.26428868195972 3.007414667211576 24.982464950211753 1.020678876489818 1.0049446447269867 0.15549039111301977 0.01421950523002484 295.60057834300477 995963.7647917368 0.004384696135727975 0.005232029238011936 1017.2194771506802 -3.007414667211576 -0.015734231762831286 HQEGEIFDTEK ddPTM_BT-474_Trastuzumab_2h_R1 6 HQEGEIFDTEK 11 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 ;;;;; 204.17 7.9346e-08 10348000000.0 16484380.0 14677410.0 13055850.0 12570460.0 13046520.0 16420730.0 15856600.0 14933240.0 22033500.0 16124710.0 False True 16395629.929666808 15165938.719168289 14894000.19651747 14161878.947121708 14707916.98921753 15285603.585340638 15089555.679905636 16047634.198256228 16603639.158773644 15095617.202741224 1.0861185541118195 1.0046584061772774 0.9866440037849434 0.9381450759462847 0.974317034652065 1.0125855326117381 0.999598458098521 1.0630657880846452 1.099897999252298 1.0 23.847626408617263 1.746337967564945 5.132547497505923 1.0611356058865142 0.9967767014329065 0.2508957824619421 0.04195177301422376 0.21020346303565593 13.201025674263223 0.021720466393491396 0.01125791334658622 55.76195191253342 -1.746337967564945 -0.0643589044536077 HQEGEIFDTEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 HQEGEIFDTEKEK 13 1 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 ;; 268.59 5.3926e-25 1340605000.0 2728230.0 2273950.0 2072950.0 2068440.0 2061950.0 2634880.0 2795600.0 2493260.0 4870990.0 2765470.0 False True 2713541.5128148464 2349637.0511181992 2364803.3415956004 2330304.291918066 2324527.110364839 2452736.9474403583 2660366.1477709087 2679319.7217177493 3670599.7824219926 2588975.336962015 1.0481140836200478 0.9075548220074345 0.9134128501859484 0.9000874819659419 0.8978560271232681 0.9473774865381596 1.0275749288877607 1.034895807413039 1.4177808996547607 1.0 21.303949791258965 1.5162734370457762 3.368740830511523 1.2139242374702643 0.9429417656549135 0.46291957746606993 0.10799808323667222 0.1571518577689762 3.8033993289871737 0.06875961306978616 0.026149244044333286 32.83019309122888 -1.5162734370457762 -0.27098247181535084 HQEGEIFDTEKEKYEITEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQEGEIFDTEKEKYEITEQR 20 2 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 167.73 7.9835e-12 582810000.0 255630.0 301610.0 247090.0 311690.0 274930.0 332700.0 381900.0 285270.0 655890.0 373650.0 False True 254253.71648316315 311648.90652290446 281878.12425521883 351149.92204170395 309940.7058622209 309701.232091559 363426.0380003258 306558.2959717087 494254.6979757207 349803.33710214077 0.7268476012535077 0.8909260532065896 0.8058188540748881 1.0038495485798353 0.8860427359837331 0.8853581405403455 1.0389438849012675 0.8763732745128022 1.4129502081662557 1.0 18.41618452698324 1.2627157629650414 24.991799152031067 1.206475154763471 0.8964827813108532 0.5092338858006933 0.12439890637352213 144.69460058271326 149706.85354261223 0.07661918151378853 0.027948109227544517 18.31115601646996 -1.2627157629650414 -0.30999237345261765 HQEHILR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQEHILR 7 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 127.02 0.011152 0.0 219760.0 282310.0 289210.0 312330.0 317500.0 297300.0 280980.0 192800.0 236481.0 251300.0 False True 218576.83657763118 291706.517690001 329928.25414161576 351870.94597608404 357931.7430300621 276748.3507689225 267387.9239521638 207187.71501856274 178203.42623305228 235261.81885124574 0.9290790900321809 1.2399229042535151 1.4023875856805599 1.495656829035099 1.5214187528507532 1.1763419670911766 1.136554691525322 0.8806686781145986 0.7574685391076099 1.0 17.843907675901903 1.99172758957349 1.8984983728437972 0.8589182482292869 1.32248876553708 0.5491894202950871 0.1682398461632967 0.2595643430817672 1.7424613333330836 0.10683562889696446 0.05418207086358199 98.1132336491604 -1.99172758957349 0.4635705173077932 HQEPVYSVAFSPDGR ddPTM_BT-474_Trastuzumab_2h_R1 5 HQEPVYSVAFSPDGR 15 0 Q9BZK7;A0A0D9SF63 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 0 ;;;; 176.83 7.7791e-07 2132000000.0 981816.0 1138240.0 1032684.0 1067900.0 993599.0 1064719.0 1145014.0 993268.0 1248380.0 1062062.0 False True 976530.011746012 1176125.6303193902 1178076.9309497618 1203096.030505745 1120127.9431273295 991117.481608936 1089625.2984417495 1067390.7018727076 940733.4764349685 994280.2938829744 0.9821476074240172 1.1828914216194037 1.1848539473200301 1.2100169719820957 1.1265716016083158 0.9968189933024956 1.0958934871236592 1.073530983606458 0.9461451486291769 1.0 19.923293088388522 2.863584220329934 5.533714228244906 1.0373208758412074 1.1486086124676544 0.38652644894438015 0.07082200154135483 0.25786220766995394 10.597783414291026 0.021902635247242095 0.02332944736592107 730.4394492271554 -2.863584220329934 0.11128773662644709 HQERPPESHRVT(ph)PNLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 HQERPPESHRVTPNLNR 17 2 Q5TC79;Q5TC79-2;Q5TC79-3 Q5TC79 ZBTB37 Zinc finger and BTB domain-containing protein 37 1 HQERPPES(0.009)HRVT(0.991)PNLNR;HQERPPES(0.002)HRVT(0.998)PNLNR;HQERPPES(0.006)HRVT(0.994)PNLNR 138.46 3.6075e-06 280927000.0 186980.0 220298.0 203733.0 204735.0 204337.0 209931.0 229705.0 202242.0 279942.0 245188.0 True False 185973.32045543107 227630.48575704676 232416.83552101871 230654.4300080475 230358.10574971276 195418.9640944186 218593.29159168588 217334.32500406748 210954.0451306153 229539.89192399225 0.810200435735208 0.9916815933346446 1.0125335233580188 1.004855531100556 1.0035645822556694 0.8513507715649176 0.9523106844716511 0.9468259446424833 0.9190299924009231 1.0 17.80838537700675 HQEYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HQEYLK 6 0 Q9NR28-2;Q9NR28;Q9NR28-3;H7BZK7;A0A2U3TZH2;H7BZQ7;V9GYY5;Q9UGY1 Q9NR28-2;V9GYY5 DIABLO;NOL12 Diablo homolog, mitochondrial;Nucleolar protein 12 0 ; 107.43 0.033017000000000005 243320000.0 1256600.0 1419750.0 1502960.0 1187780.0 1443280.0 1730210.0 1556830.0 1293860.0 1740670.0 1387500.0 False True 1249834.6052213842 1467005.5204930014 1714563.7040374936 1338152.826214174 1627073.1530092224 1610604.6551762437 1481520.1852318575 1390414.403287956 1311705.202283003 1298948.5621014875 0.9621894520590986 1.129379225086192 1.3199627406828245 1.0301815370188796 1.2526078402803593 1.2399295108118427 1.1405533894544668 1.0704152911478586 1.009820743140804 1.0 20.308912871033442 1.570372558764774 2.3624075453034767 1.0062068190083258 1.16225090830339 0.270313943057337 0.09896789312472262 0.34774213759200073 4.224557294768968 0.07402390261691615 0.026932727170477882 37.185408669241376 -1.570372558764774 0.1560440892950643 HQFGTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 HQFGTDK 7 0 O95104-2;O95104-3;O95104 O95104-2 SCAF4 Splicing factor, arginine/serine-rich 15 0 ; 103.83 0.0082873 167323000.0 571850.0 572700.0 449090.0 485710.0 431680.0 499690.0 486650.0 469840.0 700430.0 589830.0 False True 568771.2231385083 591761.9732955387 512317.9684397435 547200.8361990314 486651.88923218 465147.60644373595 463108.8803164661 504901.84659917845 527818.4117811434 552186.5444211308 1.0300345578589996 1.0716703970320314 0.9277987187768539 0.9909709711827078 0.8813179063288256 0.842374033093038 0.8386819363770504 0.9143682541712024 0.9558697456752898 1.0 19.074796207467063 3.962462656231034 1.2751476316498735 0.8982184952435169 1.057867253806362 0.4501097960725188 0.05532200751775321 0.43400318197840637 1.2579576582591958 0.017006231137690897 0.06312071843329348 9171.97064786185 -3.962462656231034 0.1596487585628451 HQGGWTDGGSGGGGGYQDGGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQGGWTDGGSGGGGGYQDGGYR 22 0 Q8NCA5 Q8NCA5 FAM98A Protein FAM98A 0 ; 295.04 1.6616e-55 1099960000.0 151749.0 156918.0 137984.0 168786.0 188233.0 176655.0 182904.0 167183.0 173397.0 161996.0 False True 150932.00024489872 162140.92077106575 157410.9478215715 190154.29029398164 212203.35680559935 164443.2556511402 174056.2347588674 179659.0443980727 130665.63275076014 151657.27658824663 0.9952176620887301 1.069127208523482 1.037938642726298 1.253842180024473 1.3992296418571255 1.084308378407769 1.1476945826439604 1.1846384719531236 0.861584987481482 1.0 17.210455195253672 1.244337557160279 24.993791436263464 0.9307924657843417 1.151841762912867 0.36133237180891664 0.11453582847718503 138.38739498245914 598749.8772032402 0.08564678382526543 0.029389541996126346 17.55244242544792 -1.244337557160279 0.22104929712852528 HQGTFTDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HQGTFTDEK 9 0 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 ; 161.67 6.436e-05 538190000.0 421130.0 401510.0 355160.0 368500.0 351810.0 463270.0 459380.0 391510.0 577370.0 440600.0 False True 418862.6828719411 414874.01763207914 405163.44089394016 415152.0622168434 396610.91815876006 431245.2353202784 437158.03439798224 420726.4642474975 435084.89986162615 412480.53078336205 1.0154726141291044 1.005802666235353 0.98226076300977 1.006476745528832 0.9615263959380986 1.0454923399688207 1.0598270749112786 1.019991085272498 1.0548010569985813 1.0 18.65396649972213 2.714428726092445 24.972987244536558 1.0377807254030247 0.9949532043262682 0.48892112701317914 0.02128157960649046 628.2971396624528 650195.2266204144 0.0065709429322637816 0.006198057094209554 518.118054480268 -2.714428726092445 -0.04282752107675647 HQGVMVGMGQK ddPTM_BT-474_Trastuzumab_2h_R1 22 HQGVMVGMGQK 11 0 C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;Q562R1;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JTX5;P60709;P63261;P68133 ACTB;ACTBL2;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle 0 ;;;;;;;;;;;;;;;;;;;;; 149.33 2.61e-05 78910630000.0 101976130.0 103141090.0 101384560.0 89960000.0 81666240.0 108549990.0 113583580.0 92486480.0 141526710.0 103204170.0 False True 101427101.84669316 106574078.83054452 115658624.79760696 101348926.77619344 92065951.5902721 101046184.69049112 108089108.30398805 99388290.7744294 106649348.68125363 96617591.51306468 1.0497788265916164 1.1030504607034581 1.1970762568840017 1.0489697081973832 0.9528901533197802 1.0458363027692281 1.1187311400675124 1.0286769647015064 1.1038295098344741 1.0 26.525782553873825 7.998066268525439 0.009002267172077801 4.0709256095126697e-08 2.258847942989784 0.10502184149617211 0.06149612973650392 36295.17906444409 25.264418553270417 2771.759565856527 3620.029769746576 99555731.67767283 -7.998066268525439 2.258847902280528 HQHMHDRDDLYAEQMER ddPTM_BT-474_Trastuzumab_2h_R1 19 HQHMHDRDDLYAEQMER 17 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ;;;;;;;;;;;;;;;;;; 214.24 1.4024000000000002e-17 11307678000.0 6145845.0 6889805.0 5843365.0 7201483.0 6978612.0 6661492.0 6568004.0 772922.6 6505321.0 2038485.5 False True 6112756.453387572 7119127.99444993 6666060.0005609235 8113190.009415318 7867296.872726022 6200998.737505454 6250284.554308171 830602.009233436 4902171.8063853895 1908387.6101547617 3.2031000520339026 3.7304413194511366 3.4930325291832807 4.251332363637267 4.122483729648622 3.2493392351266523 3.2751651294787547 0.4352375821419622 2.568750593590285 1.0 20.86392279436503 1.8733024302783698 5.54200040506637 1.3404366995295518 3.679806261667922 0.7625608113193505 0.586769833573277 0.1007447585101805 4.01988178483296 0.25490234429310105 0.15180372314488913 74.69687450457029 -1.8733024302783698 2.33936956213837 HQILEQAVEDYAETVHQLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQILEQAVEDYAETVHQLSK 20 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 256.92 1.9295e-36 182660000.0 198580.0 199150.0 219160.0 198630.0 185260.0 242370.0 240100.0 232360.0 279590.0 235900.0 False True 197510.86734431214 205778.58736128279 250015.8230271313 223776.5376340074 208851.76287795094 225615.5323776109 228485.44572892948 249699.88310017236 210688.7908140573 220844.66003584885 0.8943429617553396 0.9317797737463045 1.132089057469387 1.013275745936907 0.945695326498041 1.0216028422013357 1.0345980097134353 1.1306584594784386 0.9540135169211563 1.0 17.75267242326071 4.41775988136633 9.498987525172595 1.035122965649516 0.9036218470199487 0.3833680742061336 0.059235413196617355 0.28830478382767366 43.43535143047528 0.014888383242354152 0.040952422554203886 26167.35831729786 -4.41775988136633 -0.13150111862956726 HQIVEVAGDDKYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 HQIVEVAGDDKYGR 14 1 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 ;;; 176.23 1.3563999999999998e-06 2978970000.0 3344220.0 2829750.0 2723870.0 2645400.0 2706070.0 3603320.0 3536710.0 3079440.0 4359970.0 3309010.0 False True 3326215.0910977675 2923936.5181300016 3107367.219697531 2980307.3687610254 3050671.9743664907 3354230.9697029036 3365625.825755774 3309243.449879478 3285513.8141048127 3097826.1488140128 1.0737255518264615 0.9438672080579525 1.003079924574583 0.9620641138632073 0.9847783018857998 1.082769273862271 1.0864476132865903 1.0682469870513571 1.0605868942524923 1.0 21.562824751127046 2.7438958425389353 24.898385255139758 1.06635784487302 0.9895309159877455 0.4105245839401872 0.039048265137742205 341.1749039808763 1592189.4828825186 0.011272589871457545 0.011642273923087757 554.4927122366854 -2.7438958425389353 -0.07682692888527454 HQKPAGAPATK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQKPAGAPATK 11 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 88.441 0.0077968 317830000.0 397910.0 348720.0 323270.0 314770.0 322450.0 458260.0 412500.0 362690.0 540560.0 415820.0 False True 395767.6967719574 360326.9343943088 368783.60608678916 354619.84972590517 363512.0961891134 426581.5648280067 392545.79909697396 389755.7695025024 407346.23113289697 389282.0115985872 1.0166606341421651 0.9256192776918348 0.9473430446281828 0.910958737265198 0.9338014225120508 1.0958162774494737 1.0083841210257418 1.001217004356224 1.0464039410917783 1.0 18.57045615491161 2.7704217839414302 24.992419410543132 1.0261712725266885 0.9437261213514022 0.557597105029713 0.0370356707333895 499.891820544118 392122.46412401967 0.01117561334557764 0.011852774027030728 589.4158142302181 -2.7704217839414302 -0.08244515117528628 HQLEETKK ddPTM_BT-474_Trastuzumab_2h_R1 4 HQLEETKK 8 1 P22059;H0YCV6 P22059 OSBP Oxysterol-binding protein 1 0 ;;; 179.51 0.00015838 1166930000.0 2968240.0 2289610.0 2080930.0 1945070.0 1948800.0 2733960.0 2879540.0 2601220.0 4174110.0 2710150.0 False True 2952259.3256424656 2365818.2847515293 2373906.8562321933 2191315.662567481 2196968.1285574334 2544967.780249591 2740245.6492889714 2795336.245127519 3145456.520708408 2537185.906723847 1.16359598160254 0.9324576013455801 0.9356456103358667 0.8636795816815124 0.8659074302498702 1.0030671278384138 1.080033450456662 1.1017467177787574 1.2397422326730456 1.0 21.274797802908996 2.2570583659755132 2.5384933544967914 1.1189371960722645 0.9447888102939876 0.36442506913974104 0.09527466535030354 0.28714203550835143 3.7965634566487547 0.04082526047635566 0.029236322693287676 180.7417013206592 -2.2570583659755132 -0.17414838577827685 HQLGPSLRS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQLGPSLRSPPR 12 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 HQLGPS(0.156)LRS(0.844)PPR 71.031 0.039213 0.0 135040.0 224270.0 194270.0 240990.0 227320.0 196240.0 205210.0 176080.0 175790.0 190280.0 True False 134312.95964435444 231734.6913759219 221621.5273748894 271499.30929073837 256267.8545687991 182674.3906992713 195283.20832167257 189219.98371612307 132468.90996531735 178136.16749309606 0.7539903969785358 1.3008851298257729 1.2441130315856757 1.5241110949648153 1.4386065344014498 1.0254761470960192 1.0962580539925508 1.0622210322530745 0.7436384863868332 1.0 17.44262093509634 1.949411958415126 1.3027216806464603 0.9079747132761049 1.2535895430739523 0.2775068099692022 0.21092506176932196 0.5803893075311314 1.8249939500006163 0.15953692028362337 0.07176798929926957 89.0044986915724 -1.949411958415126 0.3456148297978474 HQLILPAFEHEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQLILPAFEHEYR 13 0 Q9H4Z3;A0A087WWZ2 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 0 53.3 0.08440399999999999 31159000.0 379440.0 392220.0 365110.0 328240.0 312220.0 410660.0 399850.0 357310.0 519300.0 398530.0 False True 377397.13719974726 405274.8055980031 416514.31440698996 369795.15034479497 351979.36632707436 382272.0407896591 380507.7279246663 383974.2865834159 391325.4732634924 373095.4742013008 1.0115296574091528 1.0862495892387591 1.1163746097393368 0.9911542109601544 0.9434029374935987 1.0245957595921067 1.0198669087027474 1.0291582534079347 1.0488614853911515 1.0 18.50918533422447 3.7238251325779603 24.89358685761741 1.0093005126842332 1.072871118800839 0.39388640433962485 0.03591320987325075 776.2228778761767 1311323.3798805408 0.010065070147576965 0.015667603599893293 5294.502193618108 -3.7238251325779603 0.06357060611660592 HQNQNTIQELLQNCSDCLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQNQNTIQELLQNCSDCLMR 20 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 215.06 1.2205e-24 373750000.0 123170.0 143560.0 139200.0 136110.0 138300.0 173530.0 137250.0 119010.0 170000.0 142050.0 False True 122506.86640547332 148338.30781614757 158798.1500519103 153341.51204432733 155911.6852316775 161534.2795456817 130610.69315408396 127891.13052053498 128105.77788329241 132984.24738487633 0.9212133678579245 1.1154577382901172 1.194112484558601 1.1530802712334343 1.172407170756441 1.2146873236660678 0.982151613612378 0.961701352118788 0.9633154332372548 1.0 17.020895836210787 2.1738977494486122 8.997164469087856 0.971958557561035 1.1338910709099719 0.4839612610541544 0.0765688631366948 0.26512168878208053 34.087248225596866 0.02957520233429153 0.021854363815599267 149.24429865456787 -2.1738977494486122 0.16193251334893688 HQNS(ph)LPELEAAEAGAPGSGPVDLFR ddPTM_BT-474_Trastuzumab_2h_R1 4 HQNSLPELEAAEAGAPGSGPVDLFR 25 0 Q96BZ8 Q96BZ8 LENG1 Leukocyte receptor cluster member 1 1 HQNS(1)LPELEAAEAGAPGSGPVDLFR;HQNS(1)LPELEAAEAGAPGSGPVDLFR;HQNS(1)LPELEAAEAGAPGSGPVDLFR;HQNS(1)LPELEAAEAGAPGSGPVDLFR 188.54 7.621e-18 910350000.0 500593.0 323246.0 294311.0 391679.0 444857.0 384234.0 250183.0 215196.0 437062.0 346265.0 True False 497897.86290911044 334005.0477036668 335747.43060292926 441265.5212402476 501506.902075983 357672.8079695461 238080.69249812877 231255.01826314614 329353.9264307502 324166.0712476187 1.5359345319294206 1.0303516540709543 1.0357266240440814 1.3612328999822467 1.5470678351557035 1.1033628738287444 0.7344405032328863 0.7133844000796086 1.0160036957697793 1.0 18.306373573915575 2.420772166542896 4.995745306941461 0.8284171453448013 1.2803916480571298 0.5389442976740313 0.18801422397004977 0.15324124135118955 7.98601897170861 0.06896496633313863 0.05777683829538438 263.4948713478747 -2.420772166542896 0.45197450271232853 HQNVQLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HQNVQLPR 8 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20;K7EK45;A0A087WUW5 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ;; 129.47 0.0010895 1800370000.0 750420.0 734830.0 799010.0 713510.0 691590.0 809260.0 881660.0 797341.0 1295330.0 897530.0 False True 746379.8220994994 759288.372335885 911503.662880581 803840.2928421722 779659.8871249155 753317.7609931325 839010.7375317283 856842.6342355584 976113.2780327348 840248.8669859068 0.8882842350943844 0.9036470052730463 1.0848020136584955 0.9566692969496794 0.9278916256342806 0.8965412398536059 0.9985264729262655 1.0197486338888808 1.1616954409402456 1.0 19.68045716660274 1.6666749464491029 2.4789728341896065 1.0805095233199824 0.949139376895542 0.3921903639216835 0.06552693205984902 0.25320311457661654 3.478261535540792 0.04421628087702746 0.01815060263459512 46.41677325900039 -1.6666749464491029 -0.13137014642444045 HQPST(ph)PDPFLKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HQPSTPDPFLKPR 13 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 HQPS(0.25)T(0.75)PDPFLKPR;HQPS(0.001)T(0.999)PDPFLKPR;HQPS(0.001)T(0.999)PDPFLKPR 121.82 0.00035515 2426000000.0 1303880.0 1394170.0 1337540.0 1380030.0 1379310.0 1474420.0 1421250.0 1278530.0 1746520.0 1401750.0 True False 1296860.0549546862 1440574.1056564392 1525854.0058939087 1554741.656502335 1554956.9526891175 1372496.815811352 1352498.7077977543 1373940.4008437924 1316113.5481689882 1312289.1149014458 0.9882426366480085 1.0977566523247644 1.1627422559307763 1.184755431442482 1.1849194929928961 1.0458799057511254 1.030640803493465 1.0469799568115572 1.00291432217498 1.0 20.323654169374922 2.583177622556169 6.284744928848398 1.0280878750635833 1.127559892587581 0.4490814686302387 0.05469019889982734 0.2449645405745327 12.448005828834683 0.019104077987325996 0.017932801976803536 382.98134723318026 -2.583177622556169 0.09947201752399759 HQPTAIIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQPTAIIAK 9 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 139.43 0.0001115 653550000.0 1685100.0 1483900.0 1939900.0 1319100.0 922730.0 1477300.0 1793500.0 1247700.0 2717100.0 1582600.0 False True 1676027.6088322117 1533290.714463508 2213021.0580869303 1486097.92474963 1040234.1960508004 1375177.7281901406 1706741.5531646577 1340809.7096922235 2047507.1122746663 1481597.1130679725 1.1312303419393335 1.0348904576956772 1.493672631086857 1.003037810779975 0.7021032822457158 0.9281725214370409 1.1519606363368744 0.9049759194763698 1.3819594370259354 1.0 20.49872176190741 3.5295642050821234 24.998596245594054 0.9929666841905538 1.2092485669711055 0.18714765265959188 0.19762862264454542 534.635721294571 254849.4595043055 0.05213273366154142 0.08076290078932953 3385.0431185437483 -3.5295642050821234 0.21628188278055172 HQPVPQLQAHS(ph)TPHPDDFANDDIDSYMIAMETTIGNEGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQPVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSR 40 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 HQPVPQLQAHS(0.497)T(0.497)PHPDDFANDDIDS(0.003)Y(0.003)MIAMETTIGNEGSR;HQPVPQLQAHS(0.499)T(0.499)PHPDDFANDDIDS(0.001)Y(0.001)MIAMETTIGNEGSR 195.96 2.3098e-31 92160000.0 30620.3 28046.2 26242.4 27284.1 26482.7 32440.7 27065.9 18483.9 30831.5 21985.8 True False 30455.443707035156 28979.700812714073 29937.101816970182 30738.264262498215 29855.114869739307 30198.15076619368 25756.619015221266 19863.262477342392 23233.489945933703 20582.647421009624 1.479666006227553 1.4079676059131832 1.454482565076252 1.4934067340201485 1.4504992608125262 1.4671655277624338 1.2513754177672178 0.9650489594971673 1.1287901634178628 1.0 14.32914093882296 2.0097927673676885 3.099048623579377 1.0335037038718853 1.4574346320264693 0.9453592211950241 0.04608584508126975 0.0494615585186393 0.936848858269505 0.020990258373004715 0.012561759862845552 102.28048232550086 -2.0097927673676885 0.423930928154584 HQPWQS(ph)PERPLSR ddPTM_BT-474_Trastuzumab_2h_R1 6 HQPWQSPERPLSR 13 1 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-2;V9GYS7;J3QRS2;V9GYU5;J3QL08 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 HQPWQS(0.999)PERPLS(0.001)R;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR 168.42 1.8316e-05 9466310000.0 667535.0 809361.0 773439.0 843984.0 811235.0 830001.0 848463.0 706457.0 836943.0 801901.0 True False 663941.0657301113 836300.0916159445 882332.488347697 950832.2878643699 914540.9686834404 772624.984482194 807419.6032465834 759176.4086559588 630689.6121116258 750722.9916380133 0.8844022004460643 1.1139929120742784 1.1753103317410367 1.2665554384976745 1.2182136139030326 1.0291745332008446 1.0755226791241106 1.0112603678215595 0.8401096265022004 1.0 19.517921142080308 1.7683640945416361 1.5020021429772008 0.9253610468816481 1.1306669348414107 0.3343638836185986 0.1064509822200674 0.43961706228738756 1.9038869601115243 0.08518134603185053 0.034033032430130734 58.66297645623437 -1.7683640945416361 0.20530588795976257 HQQGQGDDSSHKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQQGQGDDSSHKK 13 1 A0A2R8Y6L5;A0A2R8Y6I6;Q13627-2;Q13627;Q13627-5;A0A2R8Y443;A0A2R8YDF3;Q13627-4;Q13627-3;E7EMI5 A0A2R8Y6L5 DYRK1A Dual specificity tyrosine-phosphorylation-regulated kinase 1A 0 110.92 0.00041497 10975000.0 7798.7 9810.0 9851.3 7781.3 10767.0 8137.8 10757.0 8044.6 15579.0 9404.5 False True 7756.712665717021 10136.51991972977 11238.277410965398 8766.411782165336 12138.113628991126 7575.2530403206765 10236.642814269439 8644.928901651085 11739.764197904768 8804.296758402465 0.8810144499405167 1.1513151132776034 1.276453727010058 0.9956969900860085 1.3786579396482748 0.8604041013373569 1.1626871623221924 0.981898854488374 1.3334130504745665 1.0 13.103992058317292 -0.21262827956106012 10.323297466182003 0.9999998119013995 1.1090536088005605 0.03683124729294873 0.1727875969989221 0.0 0.0 0.1516696089081501 0.03574886965295485 0.6128747377780995 0.21262827956106012 0.10905379689916095 HQQIPLHS(ph)PPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQQIPLHSPPSK 12 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;C9JAU4 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 HQQIPLHS(1)PPSK 89.541 0.0028932 0.0 164750.0 129340.0 118690.0 127510.0 109110.0 143730.0 142560.0 109950.0 182680.0 144190.0 True False 163863.0043054459 133645.00371231878 135400.520328026 143652.75292610517 123004.5117543627 133794.28340402708 135663.82816791424 118155.02731478716 137660.96178658743 134987.67075273013 1.213910895652163 0.9900534098193986 1.0030584243212266 1.064191656356881 0.9112277519010004 0.9911592863107543 1.0050090309093687 0.8753023639560613 1.019803964458015 1.0 17.042468117593046 7.6930290486414314 1.0842042347515173 0.9701174398987844 199.99999987642033 0.621897979403273 0.052669611958852905 888.7017422479205 1.6735651856063671 0.015608816623326246 439072.472823301 49320679.195896186 -7.6930290486414314 199.02988243652155 HQQQLLAS(ph)PGSSTVDNK ddPTM_BT-474_Trastuzumab_2h_R1 2 HQQQLLASPGSSTVDNK 17 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 HQQQLLAS(1)PGSSTVDNK;HQQQLLAS(0.999)PGS(0.001)STVDNK 229.1 7.8494e-16 949270000.0 1064180.0 889370.0 905880.0 827090.0 852550.0 1115690.0 1053180.0 931170.0 1357720.0 1075580.0 True False 1058450.5731215135 918972.142814482 1033420.0299498886 931799.5091965512 961117.1890402505 1038564.9763517634 1002233.6598616973 1000658.6337854519 1023128.0985159031 1006935.5635496344 1.0511601848585814 0.9126424530830304 1.0263020468826143 0.9253814672229723 0.954497212961805 1.0314115559595785 0.9953304820505475 0.9937663044276088 1.016081004140113 1.0 19.94153993377932 2.7494007065177803 24.949060441936034 1.004843307534808 0.9707931148403377 0.14169057165577348 0.04039578088853532 1316.4868298839253 3029966.102807966 0.011513433135494905 0.01209410028616437 561.5658719218471 -2.7494007065177803 -0.034050192694470294 HQRKY(ph)RR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQRKYRR 7 3 H3BVB7;H3BT33;H3BMX3;H3BTJ0;Q9BUV0-3;Q9BUV0-2;Q9BUV0 H3BVB7 RSRP1 Arginine/serine-rich protein 1 1 HQRKY(1)RR;HQRKY(1)RR 50.025 0.074925 552430000.0 466820.0 489760.0 406670.0 422120.0 399270.0 427160.0 429130.0 374110.0 612910.0 469650.0 True False 464306.6929885773 506061.3655338286 463925.60116099403 475560.34871906094 450114.667841301 397631.43462648115 408371.34246420476 402027.98789208767 461866.5430732273 439676.5349124054 1.0560188141063267 1.1509856118081188 1.0551520591232362 1.081614120739476 1.0237404821500768 0.9043726536502552 0.9287994924395102 0.9143721712876529 1.0504689388648922 1.0 18.746083013881073 3.024127076490728 3.1787488331562863 0.9487121795935732 1.0884573396109893 0.6011740902978688 0.047910567257506885 0.1519640150548444 3.1816214925147155 0.014640554449844813 0.017156663328655817 1057.1267839473317 -3.024127076490728 0.1397451600174161 HQRPQPEK ddPTM_BT-474_Trastuzumab_2h_R1 3 HQRPQPEK 8 1 O95391;A0A0C4DGD2;E5RGM7;E5RK41 O95391 SLU7 Pre-mRNA-splicing factor SLU7 0 ;; 91.853 0.007325799999999999 77421000.0 86071.0 92264.0 87345.0 72544.0 68478.0 84613.0 92155.0 77361.0 118842.0 84347.0 False True 85607.60329938713 95334.95146523428 99642.41678365007 81728.06296189602 77198.2673990948 78763.90246757767 87697.11058371299 83134.07065119823 89554.98150121322 78963.90224690016 1.0841359262073167 1.2073232040527326 1.261873007138039 1.0350053712689251 0.9776399747534681 0.9974671999023409 1.1105974766736615 1.052811072979385 1.1341255808406914 1.0 16.26890566636938 3.7212462392181727 24.681889659069686 1.045998880017673 1.18673196144872 0.5224555255501632 0.06151979058289676 526.3224141158662 750279.7610806973 0.016798502588171768 0.026089176433367115 5263.155957790519 -3.7212462392181727 0.140733081431047 HQS(ph)DPS(ph)EDEDER ddPTM_BT-474_Trastuzumab_2h_R1 1 HQSDPSEDEDER 12 0 E5RJV7;E5RHR8;E5RHX2;E5RHY6;Q96BR1-2;Q96BR1 E5RJV7 SGK3 Serine/threonine-protein kinase Sgk3 2 HQS(1)DPS(1)EDEDER 157.74 0.00010859999999999997 68252000.0 471460.0 496750.0 290170.0 450940.0 452040.0 511400.0 458900.0 327880.0 491830.0 368230.0 True False 468921.71174413053 513284.0234582837 331023.413797146 508028.9577640796 509604.6145490055 476048.12170611176 436701.2538317609 352348.07054090465 370625.08668435144 344729.2461424358 1.3602608916749137 1.4889482955159659 0.9602417476942852 1.4737042576137314 1.4782749657928536 1.380933376071659 1.266794908521698 1.0221008936251403 1.075119360575563 1.0 18.395104173707153 1.8508511987758873 3.158930957156216 1.033198085515833 1.3548222401640344 0.502678624898157 0.1441476902439878 0.21495642971033635 3.7401213640431092 0.07755658775007454 0.040384310662929905 70.93346887657448 -1.8508511987758873 0.3216241546482015 HQS(ph)LGAAASTANLLDDVEGHACDEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQSLGAAASTANLLDDVEGHACDEDFR 27 0 Q9NWM3;J3QLQ8;Q9NWM3-2 Q9NWM3 CUEDC1 CUE domain-containing protein 1 1 HQS(1)LGAAASTANLLDDVEGHACDEDFR 114.52 0.0014777999999999998 16315000.0 21878.0 10412.0 9234.1 16351.0 9849.3 9196.4 6951.5 4878.9 16319.0 8219.9 True False 21760.2112788743 10758.55712581309 10534.18101576397 18421.0349234942 11103.549973625173 8560.674513997035 6615.229387691181 5242.988292552208 12297.401113396743 7695.2989445895555 2.8277278680867317 1.3980687694241252 1.368911213406516 2.393803678861072 1.4429004062840087 1.1124550944204594 0.8596455362325132 0.6813235366559048 1.5980407261556555 1.0 12.909761657674249 2.9107018442605943 3.0893507656803663 0.9832768511827691 1.912002669687372 0.4696649453725389 0.4647417597318129 0.23266941037853087 4.285633415203004 0.14704375423272772 0.16139010728851907 814.1451578853555 -2.9107018442605943 0.9287258185046029 HQT(ph)VY(ph)RLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HQTVYRLLK 9 1 Q9BSK4 Q9BSK4 FEM1A Protein fem-1 homolog A 2 HQT(1)VY(1)RLLK 83.869 0.046568 29820000.0 34269.0 96052.0 105870.0 120190.0 101720.0 71850.0 77615.0 61586.0 36237.0 83529.0 True False 34084.49951164383 99249.03275533985 120775.57576146348 135406.0416766418 114673.43905832425 66883.1786167073 73860.46593190695 66181.86004737146 27306.876900922718 78198.10770722515 0.43587371243376744 1.2691999290689957 1.5444820763905054 1.7315769607060567 1.4664477494476371 0.8553043107784513 0.9445300928309109 0.8463358256079202 0.34920124925733576 1.0 16.254846076155822 2.6746214934199513 6.130701522539456 0.8026342290977361 1.3265619810877303 0.3146693352304155 0.360041213931152 0.28485756682404795 21.27246956303512 0.12216137403194631 0.11546649365549076 472.7390666536044 -2.6746214934199513 0.5239277519899942 HQTEDDFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HQTEDDFQR 9 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 64.10300000000001 0.071707 89458000.0 90026.0 135980.0 158110.0 198610.0 168170.0 101890.0 100990.0 94755.0 65108.0 115460.0 False True 89541.31001882895 140506.0120983542 180370.51368324368 223754.0056360578 189585.45267831668 94846.58412326092 96104.72788073555 101826.09925614073 49063.005802502325 108091.24394972081 0.828386340529854 1.2998833852232405 1.6686875559239926 2.0700474660106427 1.7539390403028696 0.8774677823800353 0.8891074278453039 0.9420383699488708 0.4539036096700324 1.0 16.72189013514167 2.724880309131998 22.259830865204794 0.8431279770473581 1.5500804941413941 0.520417015841543 0.3314534272619783 159.3712762531226 259318.60974651756 0.11536474323312122 0.10950258872037967 530.7381534827732 -2.724880309131998 0.7069525170940361 HQWAHAEEKPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HQWAHAEEKPHR 12 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 0 ; 225.33 1.1572e-11 191071000.0 102497.0 119184.0 114209.0 106421.0 103358.0 126603.0 116107.0 30379.0 141271.0 90531.0 False True 101945.16754048718 123150.96739175069 130288.63447757631 119893.88768840917 116520.02864913754 117851.23260140566 110490.46083818749 32646.03524143629 106456.65498441538 84753.23407251139 1.2028469315196524 1.453053311055809 1.5372703579205804 1.4146231586376148 1.3748151315317099 1.3905219534227682 1.3036725034428347 0.3851892567722629 1.2560777904160616 1.0 16.370980800203775 1.9268653123018822 9.616884961866566 0.8186079030651747 1.3997778794823188 0.5256337237707017 0.21762627103448573 0.3164984067556957 40.078199644043075 0.08629994733017105 0.05477218864251147 84.50167395739788 -1.9268653123018822 0.5811699764171441 HQYINEDEYEVNLK ddPTM_BT-474_Trastuzumab_2h_R1 3 HQYINEDEYEVNLK 14 0 Q93009;A0A669KBL1;Q93009-3 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 0 ;; 245.03 1.2529999999999999e-17 1346500000.0 1033520.0 847190.0 710280.0 617980.0 571750.0 834970.0 666920.0 610040.0 1084120.0 855350.0 False True 1027955.6431548666 875388.2070128309 810281.2501355654 696216.2046370837 644558.9734722466 777250.4892079616 634658.531718191 655564.2825203534 816953.1524637354 800760.8306980217 1.28372368346089 1.0931955878133508 1.0118892171951577 0.8694433817775444 0.8049331944850321 0.9706399956282 0.7925694007347491 0.8186767601368555 1.020221171097491 1.0 19.611011880753853 4.471511760557627 1.2746205240410695 0.8780558095215909 1.3521715951476458 0.6959745632308691 0.0799784958579198 0.4531866021856403 0.9049056768780378 0.02255414277324617 0.2489917595607173 29615.001607990514 -4.471511760557627 0.47411578562605494 HQYYNQEWTLWDR ddPTM_BT-474_Trastuzumab_2h_R1 7 HQYYNQEWTLWDR 13 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;;;;; 260.19 5.2707e-24 6589359000.0 2658778.0 2681159.0 2614427.0 2561561.0 2602654.0 2745580.0 2805538.0 2435763.0 3072558.0 2835701.0 False True 2644463.4346660036 2770399.756520161 2982515.596593144 2885854.3599572303 2934086.559761149 2555784.517000126 2669823.4087440637 2617532.0036138953 2315367.251067842 2654724.1344142295 0.9961349280645727 1.0435735000131965 1.1234747738680735 1.0870637451729048 1.1052321865482875 0.962730734944731 1.005687699951229 0.9859902088061814 0.87216868263366 1.0 21.340130520526717 2.729983390695103 24.866962301706813 0.969624386457541 1.0733638569124715 0.552051525369091 0.04754195353247684 475.81057071007126 1379460.3011936948 0.015727955682876913 0.015049108067744095 537.0112583375249 -2.729983390695103 0.10373947045493048 HRADHPPAEVTSHAASGAK ddPTM_BT-474_Trastuzumab_2h_R1 3 HRADHPPAEVTSHAASGAK 19 1 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;; 220.04 1.9299e-19 341330000.0 424400.0 482140.0 427530.0 430620.0 470090.0 534640.0 541570.0 93128.0 697680.0 406060.0 False True 422115.0775552726 498187.7384402156 487722.5078426237 485136.4478475367 529953.1750582738 497681.5952071867 515372.19010169193 100077.68425440199 525746.1124330319 380144.90315454407 1.1104057270068566 1.3105206312280409 1.2829910484012068 1.2761882214433093 1.394082021514903 1.3091891830649096 1.3557256346856046 0.2632619388657604 1.3830150241927488 1.0 18.536189922504867 HRAEAPPLER ddPTM_BT-474_Trastuzumab_2h_R1 1 HRAEAPPLER 10 1 O75569;G5E9Q4 O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 0 118.9 0.00069593 161450000.0 36295.0 45035.0 53840.0 36325.0 44576.0 45532.0 53583.0 40817.0 56035.0 50622.0 False True 36099.59175275357 46533.96275076764 61420.20401433082 40923.741275513865 50252.48937734824 42384.480010799125 50990.98558306214 43862.97180452632 42225.92508053112 47391.260620325374 0.7617352077203664 0.9819102117492513 1.2960238493421432 0.8635292824002725 1.0603746074607632 0.8943522382821165 1.0759575692990302 0.9255498003299405 0.8910065807032167 1.0 15.53233341710791 1.6085388945530126 24.99999972724907 0.9312017984037477 0.996407526642107 0.026639084519577416 0.13781302287277275 0.2812196327939496 9077.848368709965 0.06671066430072743 0.034203471982795226 40.6012023255452 -1.6085388945530126 0.06520572823835924 HRDILQDYTHEFHK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRDILQDYTHEFHK 14 1 B4DQA8;E9PCW1;K7EJC8;G5E9T8;O95249;O95249-2 B4DQA8 GOSR1 Golgi SNAP receptor complex member 1 0 101.36 0.00047722 109950000.0 115160.0 152070.0 141160.0 130710.0 155260.0 156480.0 149970.0 22559.0 189340.0 94453.0 False True 114539.99135547869 157131.5580217437 161034.10101528483 147257.87259800168 175031.44070188186 145662.90591429852 142715.37815896506 24242.467132280883 142679.69402601526 88424.92867471841 1.2953359767676786 1.7770051995152947 1.8211391677528843 1.665343413956343 1.9794354750995138 1.6473058909681093 1.6139722168616104 0.2741587411561244 1.6135686640006173 1.0 16.43216552977 1.9062191123207768 9.381893374376533 0.8936029125703983 1.7108277986896854 0.47964453745583746 0.3436444671872092 0.28836728294889585 27.0438620009046 0.1361133513767442 0.08620153152849286 80.57848770865138 -1.9062191123207768 0.8172248861192871 HRDLLHNEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HRDLLHNEDR 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 ; 91.961 0.0058837 71691000.0 100098.0 148230.0 106725.0 123525.0 106192.0 109837.0 133467.0 51057.0 181785.0 104657.0 False True 99559.0834899333 153163.74594307272 121750.95232967027 139163.25233469647 119714.92175070354 102244.22671848677 127010.69131654735 54867.132602192716 136986.5225442019 97977.70065863447 1.0161402321208635 1.5632510756372284 1.242639411939912 1.420356381086725 1.2218588612096954 1.043545888821349 1.296322433193928 0.5599961239482042 1.3981397973553047 1.0 16.58016581439016 2.56611598580371 1.4223995159221539 0.9723930694293099 1.3230656459810886 0.16402503646857514 0.24763914797468364 0.5453898442620269 2.2364713150362956 0.11248294573420396 0.09168033034182738 368.22730193990986 -2.56611598580371 0.35067257655177864 HRDLVDEDLSHFQSGS(ph)PPAPNGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRDLVDEDLSHFQSGSPPAPNGFK 24 1 Q70EK8 Q70EK8 USP53 Inactive ubiquitin carboxyl-terminal hydrolase 53 1 HRDLVDEDLS(0.045)HFQS(0.411)GS(0.544)PPAPNGFK 70.051 0.019176 299360000.0 55354.0 61263.0 53561.0 66344.0 56355.0 77672.0 77028.0 55089.0 97729.0 80674.0 True False 55055.98021440754 63302.10192073449 61101.923239442294 74743.14359759634 63531.47520774537 72302.71746022112 73301.86136446473 59200.0209162739 73644.99745150747 75525.31625151381 0.7289738454197338 0.8381573896351037 0.8090257184221666 0.9896435699611944 0.8411944280534139 0.9573308798792604 0.9705601380119409 0.7838434031726058 0.9751034634036551 1.0 16.204672699595488 4.536858497372959 1.109567253266204 0.9136841394398317 0.6876810474720786 0.43284385188391317 0.0710934362571195 1.2720763470211112 1.6595157293963574 0.021180449996962412 0.3106359725066669 34423.77523115033 -4.536858497372959 -0.22600309196775314 HRDTHPGS(ph)PGSPGPALRPLPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HRDTHPGSPGSPGPALRPLPAR 22 2 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 HRDTHPGS(0.766)PGS(0.234)PGPALRPLPAR;HRDTHPGS(0.5)PGS(0.5)PGPALRPLPAR 128.4 7.941900000000001e-06 353870000.0 167873.0 263970.0 228810.0 225320.0 242850.0 280030.0 235610.0 143768.0 303510.0 255080.0 True False 166969.19042044357 272756.0818767651 261024.45914782764 253845.4888974201 273775.5080152779 260672.1852197154 224212.64418239522 154496.6981991118 228714.0273256357 238800.57601502512 0.6991992783549149 1.1421918926175603 1.093064612756228 1.0630019957801458 1.1464608359992072 1.0915894323609763 0.9389116555911824 0.646969537415986 0.957761623285386 1.0 17.86544679099354 1.9979645381443076 8.62757640697623 0.8199066994316603 1.0494852593525013 0.18866716086438495 0.15030172104627468 0.12485415082886714 109.27564542976569 0.05707272794874204 0.03981289127937899 99.53241418952928 -1.9979645381443076 0.22957855992084097 HRDYETATLSDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 HRDYETATLSDIK 13 1 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 ; 148.96 2.615e-05 1429290000.0 1794480.0 1798810.0 1654380.0 1334600.0 1401150.0 1698660.0 1767080.0 1632760.0 2096640.0 1861900.0 False True 1784818.7190654697 1858682.3034463942 1887302.3238712586 1503560.2231603796 1579578.1472332985 1581235.6324155314 1681599.589498862 1754604.8421872847 1579951.165536623 1743071.9479472102 1.023950113572434 1.066325635975805 1.0827449355110708 0.8625921752289686 0.9062036418482577 0.9071545407392558 0.9647333212374031 1.0066164189342022 0.9064176423682958 1.0 20.73320068945007 3.755342686229814 24.95329534860437 0.9399289379852868 1.0585387792609326 0.608857384953797 0.044530331339817056 597.9428528171682 889079.9333432817 0.012415592459909114 0.022305973493293746 5693.019694659597 -3.755342686229814 0.11860984127564589 HREDIEDYISLFPLDDVQPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 HREDIEDYISLFPLDDVQPSK 21 1 F5GY88;A0A0B4J1W0;O75448-2;O75448;H0YEG1;B9TX62 F5GY88 MED24 Mediator of RNA polymerase II transcription subunit 24 0 ; 136.58 2.83e-06 154047000.0 202450.0 208770.0 176116.0 176638.0 171929.0 223130.0 220780.0 184493.0 265120.0 215600.0 False True 201360.0316943093 215718.78324586997 200911.601972286 199000.35268889804 193823.13904697847 207705.54829152283 210100.02793849647 198260.80449647148 199784.72842599117 201840.22341555354 0.9976209314817512 1.0687601291529634 0.9953992250526018 0.9859301051168146 0.9602800461032521 1.0290592468474118 1.0409224899931737 0.9822660773035676 0.9898162271385794 1.0 17.622854182773754 4.179204287164946 24.99995738086485 0.9981112207198283 1.033191430491924 0.21544648163208702 0.02689118713962703 97.52536672074699 41075.615279818914 0.006765791049142124 0.01461578930273825 15107.906457150577 -4.179204287164946 0.035080209772095805 HREDS(ph)DVEMVEDDSRK ddPTM_BT-474_Trastuzumab_2h_R1 1 HREDSDVEMVEDDSRK 16 2 H0Y806;E7EUC9;A0A087WX20;A0A669KB03;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692;H0Y4N0 H0Y806 MLH1 DNA mismatch repair protein Mlh1 1 HREDS(1)DVEMVEDDSRK 211.17 4.0591e-12 567600000.0 364720.0 280280.0 221640.0 265160.0 254680.0 332530.0 312950.0 254260.0 481130.0 281120.0 True False 362756.38804420154 289608.9503671621 252844.9854705843 298729.22881253244 287111.98839337414 309542.9837914222 297811.41291490424 273234.17230611906 362561.95831169706 263178.6809210591 1.378365400930826 1.1004270914103063 0.9607350587277455 1.1350814122445456 1.0909393853200968 1.17617043564509 1.1315939872965368 1.0382078493207287 1.37762662630127 1.0 18.00568310114226 2.761801279622375 23.574053099221455 1.136872664315715 1.1218271692888526 0.0 0.13466764636689976 5727.639675321515 5809778.5364919305 0.04063616308315748 0.0430699521526589 577.8315881714741 -2.761801279622375 -0.015045495026862366 HREELEQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 HREELEQSK 9 1 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;H0YFY6 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 59.757 0.06019600000000001 110533000.0 116542.0 117394.0 115324.0 108258.0 100711.0 119026.0 130846.0 109413.0 175280.0 129134.0 False True 115914.55082103348 121301.38832382845 131560.61678582255 121963.45170005708 113535.94888913569 110798.01277706606 124516.47909973952 117577.95364795643 132084.5926316676 120892.55756282032 0.9588228850299566 1.0033817694757237 1.0882441354378554 1.0088582304719649 0.939147547028593 0.9164998657546909 1.029976382417388 0.9725822334998455 1.0925783629238837 1.0 16.88336590597416 1.2578362430558616 24.9903164968464 1.0462892436579028 0.9910158917802293 0.167821333031844 0.05034585700101786 389.5399621397365 505030.7871603192 0.03498206739796505 0.012733004319466881 18.106572296880362 -1.2578362430558616 -0.05527335187767346 HREPLTQEAGSVPLEDEAS(ph)SDLDLEQLMEDVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HREPLTQEAGSVPLEDEASSDLDLEQLMEDVGR 33 1 Q9H0M4-4;Q9H0M4 Q9H0M4-4 ZCWPW1 Zinc finger CW-type PWWP domain protein 1 1 HREPLTQEAGSVPLEDEAS(0.5)S(0.5)DLDLEQLMEDVGR 149.55 1.4137e-10 40200000.0 20565.0 25753.0 22688.0 23587.0 24716.0 23791.0 23870.0 13893.0 25473.0 19778.0 True False 20454.28032498629 26610.173036982756 25882.273192368815 26573.111781570402 27863.436096790603 22146.384167990014 22715.316907744866 14929.766207224544 19195.520470712396 18515.751107202293 1.1046962235860875 1.437164114105632 1.3978516476331915 1.4351625071928051 1.5048504343932463 1.1960834880403781 1.2268104478304969 0.8063278729976627 1.0367130320328017 1.0 14.176465454398267 2.0845170208987533 2.05965818072117 0.9344425908796887 1.3747607750254045 0.6524524432403973 0.12820963764095103 0.1774557414907003 1.4472618456351276 0.06673709147702384 0.03786318147879501 121.48342314037198 -2.0845170208987533 0.4403181841457158 HREQEELRR ddPTM_BT-474_Trastuzumab_2h_R1 3 HREQEELRR 9 2 Q8WXF1;Q8WXF1-2;A0A0U1RQF9 Q8WXF1 PSPC1 Paraspeckle component 1 0 ;; 87.258 0.0076395 304928000.0 95764.0 113989.0 106094.0 116265.0 103615.0 109923.0 116516.0 103638.0 150873.0 116744.0 False True 95248.41726438074 117783.05495719441 121031.11301442084 130984.13707908087 116809.75607577924 102324.28174090908 110879.6759456558 111371.99382310074 113692.37074462327 109293.297970433 0.8714936691740073 1.0776786604889361 1.10739739089183 1.198464494268586 1.0687732756255526 0.9362356488555296 1.0145148696643043 1.0190194265455332 1.0402501604021532 1.0 16.73784540992721 2.961512150408156 24.39358851481091 1.005219482149797 1.0760885276907457 0.1255766588858609 0.08006729053015281 807.9574324077589 512083.04550702113 0.025190757973222806 0.026724952317371937 915.1918635649926 -2.961512150408156 0.07086904554094864 HRGS(ph)ADYSMEAK ddPTM_BT-474_Trastuzumab_2h_R1 6 HRGSADYSMEAK 12 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK 199.61 1.0272e-07 4357640000.0 5271770.0 4731690.0 4311410.0 4245020.0 4008140.0 5301590.0 5393070.0 4154150.0 6274960.0 4739520.0 True False 5243387.376068704 4889181.441282988 4918419.052552491 4782439.096748295 4518552.870892954 4935103.561900477 5132186.600571916 4464153.76734628 4728580.188156146 4437039.775892785 1.1817309830209202 1.1019016479966592 1.1084910888730646 1.077844540121575 1.018371053476474 1.1122513682914812 1.1566690540968296 1.0061108290263274 1.0657060623723391 1.0 22.08116605559614 7.999999999999998 0.11107223222183848 0.9754665483397839 1.4855218228062539 0.4167800111276204 0.044753096160184976 115.16236389128221 0.8904828068556974 0.4026817730679272 9.017178284367967 99999999.9999996 -7.999999999999998 0.51005527446647 HRGS(ph)EEDPLLSPVETWK ddPTM_BT-474_Trastuzumab_2h_R1 4 HRGSEEDPLLSPVETWK 17 1 Q13017-2;Q13017;H0YK04;A0A0A0MSK6 Q13017-2 ARHGAP5 Rho GTPase-activating protein 5 1 HRGS(1)EEDPLLSPVETWK;HRGS(1)EEDPLLSPVETWK;HRGS(1)EEDPLLSPVETWK;HRGS(1)EEDPLLSPVETWK 229.15 7.2839e-16 1056150000.0 1038750.0 1077920.0 959440.0 1035800.0 1013440.0 1071390.0 980720.0 774128.0 1156320.0 862220.0 True False 1033157.4854159743 1113797.9155835994 1094520.8123980216 1166932.1737970342 1142495.5768705094 997327.3310807795 933278.8268857788 831897.3623023342 871360.4298941685 807192.3814163195 1.2799395896219572 1.3798419574145413 1.3559602860442619 1.4456679729180626 1.4153944006085126 1.2355509715426756 1.156203711001614 1.0306060630090026 1.0794953594151349 1.0 19.622553032249808 2.265364722742081 1.7157339890982533 1.0410425549628555 1.377913988861221 0.9003966266136871 0.04908203127705471 0.10466340534086403 0.6176518833232205 0.025808320274531192 0.016499547719413383 184.23185405787675 -2.265364722742081 0.3368714338983656 HRHPLDHDCSGEGHPTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HRHPLDHDCSGEGHPTSR 18 1 A0A087X0D9;E9PFU9;Q8WV99;B8ZZ56;E7EV05;B4DEN4;Q8WV99-2 A0A087X0D9 ZFAND2B AN1-type zinc finger protein 2B 0 ; 102.37 0.00019048 365734000.0 76810.0 117063.0 121610.0 124092.0 119062.0 92054.0 94372.0 30261.8 68635.0 59866.1 False True 76396.46349439333 120959.3711889222 138731.63094693108 139802.03447656054 134223.83996423712 85690.52365180753 89806.86582395052 32520.089182306736 51720.82391188105 56045.39424405316 1.3631176035932617 2.1582392776504897 2.475344010300214 2.494442877282366 2.3949129411018335 1.528948539083565 1.6023951126631553 0.5802455245598949 0.922838078123949 1.0 15.774308198177224 2.1817620746352038 1.6432893969023274 0.808163019021203 2.1934170321182678 0.7052478337704087 0.3602203024489451 0.19767115715478428 1.0430355568893495 0.2081490054630738 0.12067842416219826 151.9714735947762 -2.1817620746352038 1.3852540130970648 HRHS(ph)PTGPPGFPR ddPTM_BT-474_Trastuzumab_2h_R1 7 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 HRHS(0.5)PT(0.5)GPPGFPR;HRHS(0.908)PT(0.092)GPPGFPR;HRHS(0.935)PT(0.065)GPPGFPR;HRHS(0.834)PT(0.166)GPPGFPR;HRHS(0.851)PT(0.149)GPPGFPR;HRHS(0.965)PT(0.035)GPPGFPR;HRHS(0.936)PT(0.064)GPPGFPR 139.6 2.3523e-05 14672260000.0 2382412.0 2850960.0 2411040.0 2907330.0 2562620.0 2543207.0 2610173.0 318819.0 2771548.0 1425257.0 True False 2369585.358502854 2945852.480158283 2750493.474864635 3275397.6799047412 2888954.4671612554 2367401.086155326 2483908.9601608347 342610.8927100786 2088537.1322404877 1334295.8780360909 1.7759069764875344 2.2077955336969133 2.061381976921792 2.454776136103859 2.165152808096371 1.7742699540073759 1.8615878239965966 0.2567728030565133 1.56527286535168 1.0 20.347647186704176 1.9000691806183685 6.444015404095626 0.8884447980657353 2.0779781839363163 0.6784271323158769 0.3496341439641814 0.12580491961209095 6.845124636540932 0.14801048081528667 0.09064546380749544 79.44547767315294 -1.9000691806183685 1.189533385870581 HRLDLGEDYPSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRLDLGEDYPSGK 13 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 65.295 0.035437 227210000.0 515630.0 549080.0 508740.0 474560.0 478980.0 623760.0 557240.0 496920.0 797510.0 642550.0 False True 512853.9053718787 567355.7958741314 580366.1699526497 534639.2473422674 539975.263863116 580640.9393731017 530284.1723364785 534002.6937086318 600974.3465864965 601541.9088852684 0.8525655449713562 0.9431691915290024 0.9647975666868167 0.888781379061386 0.8976519439248332 0.9652543418780268 0.8815415260412375 0.8877231757604468 0.9990564875191761 1.0 19.198305726609135 1.2288114943028419 24.758634474565092 0.9995283455816095 0.9111876716974229 0.5077891378005892 0.03517354018741992 162.14857065127003 411772.30146307434 0.032043690378057196 0.00842340543308152 16.936025320167055 -1.2288114943028419 -0.08834067388418665 HRMS(ph)PGVAGSPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HRMSPGVAGSPR 12 1 Q15596;E7EWM1 Q15596 NCOA2 Nuclear receptor coactivator 2 1 HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR 103.04 0.0013862 616980000.0 121262.0 143712.0 120291.0 131561.0 139843.0 123647.0 147629.0 120008.0 142283.0 138460.0 True False 120609.13886547476 148495.3670442614 137226.9272118844 148216.60911074685 157651.1771356 115099.57392373019 140487.6212724536 128963.60634827634 107219.26114452038 129623.36425842994 0.9304583286776639 1.1455910583234545 1.058658892221739 1.1434405360382993 1.216225007254796 0.887953916195666 1.0838140336518625 0.9949101929738666 0.8271599935545375 1.0 16.9839662579506 2.73022290933319 24.98797725538135 0.9719172784598105 1.1017117764114817 0.349124723836724 0.09476496485603429 769.3815261942242 2305818.510151395 0.03013104674542533 0.028824007245171555 537.3075082002703 -2.73022290933319 0.1297944979516712 HRNS(ph)SSESAIVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRNSSSESAIVPK 13 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 HRNS(0.319)S(0.319)S(0.319)ES(0.044)AIVPK 70.281 0.041458 0.0 235880.0 167700.0 129000.0 121930.0 120750.0 155230.0 140590.0 109110.0 215100.0 148500.0 True False 234610.04828873184 173281.79312320935 147162.0787118997 137366.3254982355 136126.79675867732 144499.3154721152 133789.12459404487 117252.34224935377 162091.48719233065 139022.60286275353 1.687567657759541 1.2464289227434284 1.0585478597115727 0.9880862728044796 0.979170249697202 1.0393944041946073 0.9623551986443868 0.8434048840612495 1.1659362136411104 1.0 17.084959935709374 4.886099184389283 1.269202241356603 0.9782916713766452 2.199111952636436 0.8833249516521192 0.07624468981846745 0.5745378428699167 0.632333682268828 0.021488039488120426 0.9955281476676673 76930.61147377666 -4.886099184389283 1.220820281259791 HRPDLIDFDK ddPTM_BT-474_Trastuzumab_2h_R1 3 HRPDLIDFDK 10 1 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;P11277-3;P11277;P11277-2;Q01082-3 Q01082;Q01082-3 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic 0 ;; 94.297 0.0049271 355277000.0 396683.0 367371.0 319780.0 328879.0 323298.0 385969.0 410602.0 342624.0 534188.0 381485.0 False True 394547.30280362465 379598.72165454103 364802.24442241306 370515.0476792769 364468.0839626238 359287.87150329724 390739.6126080373 368192.34268941893 402544.5251524717 357138.3006942598 1.1047465422684812 1.062889981042692 1.0214593162179886 1.0374553694157511 1.0205236549933603 1.0060188750544503 1.0940848736986712 1.0309517124701288 1.1271390505301289 1.0 18.446123336052292 -0.19213796964289748 7.2097097984587215 0.9999999924434957 1.0522961642173316 0.15281032096101255 0.0387154372882345 0.0 0.0 0.03608200751468354 0.008504610737509485 0.6424835763132289 0.19213796964289748 0.05229617177383594 HRPEDVVQFLVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRPEDVVQFLVSK 13 1 Q53T59;F6TR53;B5MC96 Q53T59 HS1BP3 HCLS1-binding protein 3 0 87.18 0.0050988 294320000.0 210310.0 248830.0 224120.0 213400.0 210490.0 255660.0 259390.0 233780.0 343010.0 254330.0 False True 209177.71432763778 257112.15612908883 255674.14791403798 240416.41811960516 237294.65382802492 237986.82595890557 246842.31473397318 251225.85071078618 258479.78159851805 238098.44165713206 0.8785345795284923 1.0798565263158548 1.0738169730745881 1.0097353701533716 0.9966241365398577 0.9995312203748598 1.0367237728058403 1.0551343761945235 1.0856004760028444 1.0 17.86119865270619 2.038280179008018 4.589546099655781 1.0517079117060733 1.0125654238466004 0.09581017436053818 0.05524626277590288 0.4972329117136918 24.087657036058655 0.022067277077160354 0.015226328928687789 109.21446910873856 -2.038280179008018 -0.03914248785947283 HRPELIDYGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRPELIDYGK 10 1 P12814-3;P12814;P12814-2;P12814-4;H9KV75;G3V2N5;G3V2W4;G3V2X9 P12814-3 ACTN1 Alpha-actinin-1 0 81.475 0.012557 677410000.0 1045000.0 964180.0 769040.0 783090.0 780440.0 970450.0 847520.0 843880.0 1158200.0 905980.0 False True 1039373.8361104147 996272.1484408814 877314.1473844891 882229.1137079733 879824.4079697067 903365.0756935789 806522.2197591937 906854.6107358134 872777.1290848785 848159.5807514995 1.2254460831409728 1.1746281844250923 1.0343739165301389 1.0401687768783876 1.0373335725219905 1.0650885708243316 0.9509085767145216 1.069202814324526 1.0290246657493003 1.0 19.693976207030676 4.310887681959112 3.245556385981358 1.0296312786827075 1.2174308726985907 0.8243563781052041 0.03207630860210347 0.0867463965222722 1.7763612853289155 0.007728187341867517 0.025206797667612375 20459.154498663054 -4.310887681959112 0.1877995940158832 HRPELIEYDK ddPTM_BT-474_Trastuzumab_2h_R1 4 HRPELIEYDK 10 1 O43707;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 ;;; 128.17 0.00020237 1721660000.0 2803590.0 2210910.0 2244060.0 1828950.0 1730380.0 2291210.0 2291490.0 2081910.0 3439730.0 2260690.0 False True 2788495.7829481284 2284498.802826681 2560004.142280819 2060494.8824735342 1950733.6362342034 2132824.0456281984 2180641.874358116 2237272.6959247724 2592054.6315205703 2116410.8287259154 1.3175588336158768 1.0794212408192767 1.209596977833433 0.9735798241563323 0.9217178488018557 1.007755213061428 1.0303490441271594 1.0571069971663376 1.224740771658683 1.0 21.013188273825048 5.430621122934019 0.9652379323903423 1.0378805907652404 2.012951708375353 0.4496319633394613 0.08936946239960596 6.177206733961991 1.7556427617713668 0.0279063485688797 8.64264254547174 269538.69598030724 -5.430621122934019 0.9750711176101128 HRPELIEYDKLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HRPELIEYDKLR 12 2 O43707;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 ; 132.79 0.00010493 631690000.0 1134380.0 1115440.0 1115680.0 963630.0 929440.0 1156670.0 1253940.0 1050720.0 1642680.0 1142980.0 False True 1128272.624121467 1152566.7461022802 1272758.046335597 1085625.4591967913 1047798.6747775153 1076712.1254083067 1193282.1316840234 1129130.0618480518 1237863.5247842758 1070034.0378455902 1.0544268539280623 1.077130918585414 1.1894556633900844 1.0145709583057685 0.9792199478879723 1.006241004796597 1.1151814703825509 1.0552281721069787 1.1568449983858402 1.0 20.029225258894513 HRPS(ph)AGGPDSAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HRPSAGGPDSAGR 13 1 Q01970;Q01970-2 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 1 HRPS(1)AGGPDSAGR 122.14 0.00017661 0.0 69453.0 61922.0 65387.0 78723.0 70767.0 52386.0 67353.0 64745.0 64166.0 65936.0 True False 69079.07276495373 63983.036337360565 74592.92124600767 88689.32372834906 79778.75798112886 48764.67912337964 64094.87807655387 69576.60066844839 48353.149080349016 61727.908029350285 1.1190898083263752 1.0365333668352736 1.208414858487353 1.4367783804722365 1.2924260764384852 0.7899940347920602 1.0383452173055685 1.1271498239559037 0.7833271954941052 1.0 15.913635278527021 2.7564665001739277 24.971006881517567 0.9773244996801652 1.2200807886237206 0.4778991602078091 0.13986766781554383 864.4363175616684 1205515.7573147402 0.04628753577165902 0.04900374313962509 570.7770469012434 -2.7564665001739277 0.2427562889435554 HRPS(ph)PPAT(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 6 HRPSPPATPPPK 12 1 A9Z1X7;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK 124.47 0.0044245 31117465000.0 5454351.0 4875229.0 4051306.0 4527084.0 4536287.0 5671171.0 5415563.0 4857749.0 6911820.0 5338787.0 True False 5424985.380251366 5037498.050126841 4621694.670216989 5100212.37022762 5113956.260770432 5279136.297270571 5153591.528230317 5220258.897529612 5208494.574642925 4998061.042894491 1.0854179918358167 1.0078904612996706 0.9246975238102454 1.0204381912218445 1.0231880356965035 1.056236859046704 1.0311181644243694 1.0444568108968997 1.0421030335448977 1.0 22.252937090945544 3.2481488342271594 3.2819843876860397 1.0373583377115694 1.002327163584598 0.07435766135626087 0.03886243391480666 0.4917722420976112 11.028443360761095 0.011626129877166541 0.015339464748467552 1770.715684762335 -3.2481488342271594 -0.03503117412697132 HRPS(ph)PPATPPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 HRPSPPATPPPK 12 1 A9Z1X7;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 HRPS(0.994)PPAT(0.006)PPPK;HRPS(0.991)PPAT(0.009)PPPK;HRPS(1)PPATPPPK;HRPS(0.801)PPAT(0.199)PPPK;HRPS(0.998)PPAT(0.002)PPPK 128.9 0.00014768 3870020000.0 2195880.0 2509960.0 2325300.0 2303260.0 2389670.0 2792480.0 2646560.0 2235290.0 3024920.0 2304360.0 True False 2184057.626065204 2593502.5012971377 2652682.028130074 2594852.479841432 2693980.30981622 2599442.430390851 2518535.781959 2402098.6903726314 2279468.9978513443 2157293.771938147 1.0124062167495211 1.2022018211117782 1.2296341196715468 1.2028275952005254 1.2487776791734326 1.2049552379949953 1.1674514684647272 1.1134777848148831 1.0566335598342886 1.0 21.04079121984187 1.3528091805935232 1.4333785068105132 1.0047129192725848 1.1901686196998749 0.5072759215102955 0.06121103462867907 0.30005409249291703 1.1564099599464137 0.05588467108946881 0.01767735682363972 22.53248966776299 -1.3528091805935232 0.1854557004272901 HRS(ph)EPQHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HRSEPQHPK 9 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 HRS(1)EPQHPK;HRS(1)EPQHPK 90.793 0.0067577 163426000.0 601600.0 235500.0 196178.0 289590.0 182565.0 296860.0 205550.0 206969.0 422410.0 329390.0 True False 598361.0524440439 243338.4751372439 223798.15719025594 326252.06430766865 205813.5706024672 276338.7669332741 195606.76122274666 222414.07774728708 318312.71550400875 308368.048195033 1.9404119718188169 0.7891170196185178 0.7257501498621891 1.057995684758249 0.6674283273093737 0.8961329442228678 0.6343288883776688 0.7212617489040799 1.0322493441430938 1.0 18.23429376141912 4.7393279398988994 24.97214812587911 0.8139631336157601 1.940412326477099 0.8329313596410282 0.14808635424616387 22.113067927878415 719528.9855773578 0.03353655004458254 0.20176857859087272 54869.113042856974 -4.7393279398988994 1.126449192861339 HRS(ph)ESESK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRSESESK 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HRS(0.754)ES(0.243)ES(0.003)K 147.39 0.00032585 290460000.0 235020.0 165160.0 143470.0 128190.0 146150.0 148920.0 186500.0 209620.0 263720.0 213320.0 True False 233754.67843317697 170657.25075867175 163669.32893640487 144418.84085638318 164761.3362010822 138625.5109199728 177478.28250081366 225262.90882879205 198729.73966695217 199705.73496755943 1.1704955717528518 0.8545435652430995 0.8195524728570845 0.7231582051453997 0.8250205545065911 0.6941488733034701 0.8886989776715404 1.1279741609092206 0.9951128328850155 1.0 17.607516237816878 1.8993368949483 5.911110047863727 1.0482759406130426 0.8364632889259227 0.3201775667234199 0.1253552466641158 0.2548191960278288 12.273295392549121 0.056284703721337745 0.03408059780291064 79.31163354794631 -1.8993368949483 -0.21181265168711993 HRS(ph)LS(ph)PVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HRSLSPVPR 9 1 A2AJT9-3;A2AJT9-2;A2AJT9 A2AJT9-3 CXorf23 Uncharacterized protein CXorf23 2 HRS(1)LS(1)PVPR;HRS(1)LS(1)PVPR 78.763 0.016416999999999998 650310000.0 385540.0 436010.0 269940.0 406440.0 404750.0 441960.0 473810.0 333500.0 481330.0 421400.0 True False 383464.2954775204 450522.32927638874 307945.2056394588 457895.2623267683 456292.5133587958 411408.3454619338 450890.00017002894 358387.46347868646 362712.6709915598 394505.8912213089 0.9720115821094433 1.1419913854306827 0.7805845552423157 1.1606804169874851 1.1566177426304287 1.0428446180823774 1.1429233636389218 0.9084464172871861 0.9194100241917204 1.0 18.589687318838553 1.6767400396218741 8.982600105399966 0.9363505758972697 1.0565520136367055 0.17907465970010095 0.11151749173600715 0.1936122739683274 25.29156423431088 0.05304199266670498 0.02822617671762035 47.50507844986263 -1.6767400396218741 0.12020143773943581 HRS(ph)NS(ph)FSDER ddPTM_BT-474_Trastuzumab_2h_R1 5 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 HRS(1)NS(0.881)FS(0.119)DER;HRS(1)NS(0.995)FS(0.005)DER;HRS(1)NS(0.976)FS(0.025)DER;HRS(1)NS(0.982)FS(0.018)DER;HRS(1)NS(0.894)FS(0.106)DER 153.2 9.4865e-06 3365919000.0 3567360.0 4157440.0 2255140.0 4108240.0 4026610.0 4935430.0 3736750.0 2964870.0 4259570.0 3583840.0 True False 3548153.7301309593 4295817.877174453 2572644.1099717305 4628342.762772663 4539374.915912693 4594255.340852544 3555989.126728763 3186123.654704802 3209856.0488137365 3355116.262920212 1.0575352542456256 1.2803782463965874 0.7667824028645026 1.3794880415691662 1.3529709733402 1.369328208273121 1.0598706119452672 0.9496313704287783 0.9567048642361965 1.0 21.677931329499927 2.0088904200946978 24.081827031755537 0.9735743881293655 1.2011778700531548 0.27081621874711315 0.17328349151033023 170.7276023481754 462453.2248953124 0.0670510519023747 0.04943671076250451 102.06819157581067 -2.0088904200946978 0.22760348192378932 HRS(ph)NSFSDER ddPTM_BT-474_Trastuzumab_2h_R1 1 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 HRS(0.997)NS(0.003)FSDER 81.904 0.011878 407080000.0 286460.0 406560.0 336280.0 422800.0 360810.0 390380.0 386960.0 313420.0 352950.0 391940.0 True False 284917.7311886977 420092.10382929037 383625.3010018416 476326.43664933986 406757.0148115803 363393.94945567416 368241.2664692485 336808.9919145119 265970.20178769453 366926.053643284 0.7764990475865399 1.1448958166314704 1.0455112063936245 1.2981537612818632 1.108553101565851 0.990373798337461 1.0035844083921146 0.9179206234342489 0.7248604974948545 1.0 18.48512982145303 1.9433984374518998 1.5906421440416854 0.862275823112259 1.0815367472226056 0.2532429700302633 0.13832673639857523 0.4857435431126137 2.288733574106424 0.09237298626581451 0.042818536031727424 87.78057825832329 -1.9433984374518998 0.2192609241103466 HRS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 6 HRSPTPK 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HRS(0.996)PT(0.004)PK;HRS(0.996)PT(0.004)PK;HRS(0.999)PT(0.001)PK;HRS(0.513)PT(0.487)PK;HRS(0.998)PT(0.002)PK;HRS(0.829)PT(0.171)PK 93.325 0.0090952 1399720000.0 1189760.0 1616200.0 1294620.0 1151170.0 1585870.0 1180900.0 1772470.0 1352230.0 2199420.0 1577490.0 True False 1183354.4643547623 1669994.2399864674 1476891.242961237 1296908.003967881 1787821.144312079 1099267.1625395908 1686728.8546070617 1453140.2690848089 1657402.4117180626 1476813.2376428645 0.8012891773935542 1.1308093653412385 1.0000528200292251 0.8781801049114852 1.2105939320842038 0.7443508322651052 1.1421409367234836 0.9839702353996773 1.1222830141768203 1.0 20.49405595929761 HRSES(ph)ESK ddPTM_BT-474_Trastuzumab_2h_R1 1 HRSESESK 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HRS(0.033)ES(0.967)ESK 163.83 0.00020206 238720000.0 281440.0 187710.0 171780.0 151840.0 180890.0 162650.0 226950.0 200020.0 310190.0 246470.0 True False 279924.7583109234 193957.81387690885 195965.1308614736 171062.92843149407 203925.2692809698 151406.38833691622 215971.56146680753 214946.5080809799 233747.83083304952 230740.073586417 1.2131605661731129 0.8405900668323553 0.8492895395913121 0.7413663598725837 0.8837878315254827 0.656177256007554 0.935995027261364 0.9315525679611865 1.0130352617119456 1.0 17.815909059054622 -0.1604857746174209 7.251541712689793 1.0000000000118774 0.8860819011837553 0.04122815243822575 0.14313758828897827 18300720.665046807 2523700.7825438315 0.1350292628963133 0.03274940664651076 0.6910575647310915 0.1604857746174209 -0.1139180988281221 HRWPTGDNIHAEHQVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HRWPTGDNIHAEHQVR 16 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38 Q5T1Z4 PUM1 Pumilio homolog 1 0 176.08 2.1258e-09 63982000.0 47972.0 57926.0 57614.0 56508.0 49506.0 50183.0 64831.0 29093.0 73319.0 45776.0 False True 47713.72408219024 59854.03189299357 65725.55041013475 63661.90700610424 55810.29565494885 46713.96732807548 61694.87685152943 31264.067391260596 55250.51487426537 42854.53648919466 1.1133879395526953 1.3966790168897325 1.5336894479469352 1.4855348399849324 1.302319432833461 1.0900588631930237 1.4396346782816136 0.7295392729108975 1.2892570868943183 1.0 15.387160312569705 1.7554401010642438 24.999999999999858 0.9870521925755518 1.34200795486257 0.3988626399401486 0.18573925804018007 5.872952809279486 8708.082492616184 0.08493803870605143 0.04710289533218544 56.94296816053101 -1.7554401010642438 0.3549557622870183 HS(ph)CSGS(ph)SPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HS(0.995)CS(0.011)GS(0.984)S(0.01)PPR 110.98 0.0026527 118690000.0 185050.0 164510.0 119060.0 147260.0 151090.0 143040.0 147690.0 123570.0 178880.0 134220.0 True False 184053.7113609876 169985.615901605 135822.6131119282 165903.100901092 170330.4159194082 133151.98147994184 140545.67046941115 132791.4208757457 134797.42086919607 125653.96468847676 1.464766446624238 1.3528074209439864 1.0809258064292815 1.3203172801781584 1.355551465022962 1.059671947558951 1.1185136164851952 1.0568024749952318 1.0727669533021733 1.0 16.93909666691416 7.999999999997127 0.17740614159012943 0.9557542583324257 2.9650133832097105 0.6387017122582843 0.09464664573463612 37.245810833164136 0.4145523518927932 0.22746610151126137 20.12002229053846 99999999.9993384 -7.999999999997127 2.0092591248772846 HS(ph)CSGSS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HS(0.988)CS(0.106)GS(0.046)S(0.86)PPR;HS(1)CSGS(0.007)S(0.993)PPR 147.96 3.7953e-05 131540000.0 308770.0 297130.0 215051.0 244534.0 260086.0 256036.0 257420.0 191408.0 299400.0 230340.0 True False 307107.6166275723 307019.79243112233 245328.31154319952 275491.979327364 293206.4104495018 238336.83396391475 244967.61116010384 205691.8369101298 225616.88175445722 215639.50399600467 1.424171410787804 1.4237641375617833 1.1376779625116598 1.2775580272734641 1.359706385036641 1.1052558995328174 1.1360052616548522 0.9538689947735217 1.0462687845852094 1.0 17.71826197070199 2.4345514242941393 1.024806330526049 0.986678101023351 1.3334188081484333 0.7165783245084683 0.08766757906960605 0.29019887808085815 0.6082381214711796 0.05830596569782995 0.039494737520193515 271.9890526041319 -2.4345514242941393 0.3467407071250823 HS(ph)DENDGGQPHKR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSDENDGGQPHKR 13 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 HS(1)DENDGGQPHKR 135.47 3.9327e-05 86608000.0 110840.0 108030.0 94143.0 79286.0 81678.0 92060.0 96163.0 55279.0 100450.0 74558.0 True False 110243.24975548172 111625.71324448597 107397.51609437489 89323.59947062336 92079.2091565651 85696.10888592998 91511.22831166604 59404.19968107431 75695.4434610395 69799.6446076847 1.5794242273741363 1.5992303953965457 1.5386541965652185 1.2797142445735195 1.3191930943789862 1.2277442008135258 1.3110557915590155 0.8510673659581084 1.0844674623558999 1.0 16.090932070367813 3.053102491954069 0.4847198534249887 0.9466239661574375 1.683269308059442 0.8130579857437883 0.1027093115152496 0.49556673000328505 0.2321904319559539 0.09200977841246373 0.1681850052858341 1130.062573956988 -3.053102491954069 0.7366453419020046 HS(ph)FSAGPELLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSFSAGPELLR 11 0 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 HS(1)FSAGPELLR 143.56 2.3914e-05 141890000.0 132910.0 186340.0 167820.0 188930.0 191530.0 140400.0 134730.0 124940.0 132440.0 142800.0 True False 132194.42732768928 192542.21425509106 191447.59728241086 212848.51862857048 215920.21021274923 130694.47846605006 128212.59518141883 134263.65723246487 99801.93660507798 133686.3817427693 0.9888398923238813 1.440253014144465 1.4320650674111441 1.592148099558262 1.6151249468940594 0.9776199846407986 0.9590550174969745 1.0043181323495338 0.7465377946806162 1.0 17.02849298405035 2.682340830545937 8.162845392248103 0.9438409586096276 1.425814377744968 0.6523124519679674 0.1736962658790426 0.2156435784543223 29.128336858600434 0.05746339099516866 0.05424268927000691 481.21685511619256 -2.682340830545937 0.48197341913534053 HS(ph)HSHS(ph)PMSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 HS(0.5)HS(0.502)HS(0.994)PMS(0.002)T(0.001)R 95.195 0.0041933 365300000.0 500720.0 594840.0 386770.0 549350.0 564200.0 568200.0 524370.0 112190.0 452740.0 212420.0 True False 498024.1791552213 614638.8898116266 441223.8541348943 618897.6536738755 636047.5257246024 528921.671398929 499004.2198120731 120562.18748927675 341168.2934051867 198863.17373808834 2.504355984035241 3.0907627503779733 2.2187308280416254 3.1121782984766764 3.1984178556976333 2.659726592192189 2.5092841999458577 0.6062569817379185 1.7155931236143325 1.0 17.60141661142066 1.8548769378384444 5.161421285728987 1.1102457214389563 2.7978042335785207 0.8002220542252325 0.37924050393640296 0.08883457287664404 3.259887124808235 0.16771870876126652 0.09790019380938107 71.59405117774699 -1.8548769378384444 1.6875585121395644 HS(ph)LSPVPWEEDSFLQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLSPVPWEEDSFLQVK 17 0 P10073 P10073 ZSCAN22 Zinc finger and SCAN domain-containing protein 22 1 HS(0.619)LS(0.381)PVPWEEDSFLQVK 189.44 2.2849e-10 163200000.0 289490.0 280040.0 262600.0 249640.0 251020.0 315910.0 333080.0 294070.0 428080.0 318290.0 True False 287931.41800536285 289360.96211224515 299571.79743988195 281244.39840383444 282985.909087894 294071.88527215004 316967.6479108365 316014.9966572033 322585.4199781164 297976.4596982216 0.9662891434342433 0.9710866502853888 1.0053539052825717 0.9438477075963225 0.9496921648592329 0.9868963661423928 1.0637338541166923 1.0605367852791137 1.0825869275204416 1.0 18.18483883593603 2.315323949504403 4.3643456979397675 1.0576064127471965 0.9683863690576239 0.7134511355170914 0.02528640326242974 0.10435281263937794 3.755451353391332 0.008895525519967038 0.007219331296973787 206.692134159096 -2.315323949504403 -0.08922004368957259 HS(ph)PATISSSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPATISSSTR 11 0 O15119;O15119-2;O15119-3 O15119 TBX3 T-box transcription factor TBX3 1 HS(0.982)PAT(0.014)IS(0.004)SSTR;HS(0.991)PAT(0.009)ISSSTR 152.38 3.4588e-05 445520000.0 374710.0 388600.0 335100.0 355360.0 351520.0 378130.0 362340.0 296690.0 445330.0 357800.0 True False 372692.6029941946 401534.3160863396 382279.1672585851 400348.5395641188 396283.98837772425 351990.7631222757 344812.22992678126 318830.51436129335 335584.3886162737 334964.89767200855 1.1126318177946166 1.1987355059499833 1.1412514263894775 1.1951955036080608 1.1830612435269507 1.0508288049541794 1.0293981020793859 0.9518326146326124 1.0018494204872528 1.0 18.353650392073156 2.4982021372697094 2.1614596141054983 0.9855902016713163 1.168785137837004 0.8742040038696504 0.030661133958667937 0.09421441847895708 0.8879194569670942 0.011750208778494484 0.009855151637557676 314.9213737617684 -2.4982021372697094 0.18319493616568772 HS(ph)PEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSPEDFR 7 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 HS(1)PEDFR 95.608 0.013995 174720000.0 575120.0 599010.0 550740.0 471540.0 505180.0 595670.0 542980.0 482090.0 576910.0 469500.0 True False 572023.6178218392 618947.6857408079 628279.4048821055 531236.9156519142 569511.6785635494 554492.7349563534 516713.9830149694 518066.0038034173 434738.26069794234 439536.10804082704 1.3014257699363025 1.4081839339654796 1.4294147702280395 1.2086308859124935 1.2957107917756086 1.2615408036166358 1.1755893851773687 1.1786654027416013 0.9890842930646347 1.0 18.745622162562384 1.90682908148772 0.5281268551964734 0.9780932213334411 1.3737368398646708 0.807899669298146 0.06177515918327072 0.35485589728272016 0.21680141694850683 0.06030407006362917 0.042032284504766544 80.69174018420529 -1.90682908148772 0.39564361853122965 HS(ph)PESPSIAVVESELVAEYITTER ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPESPSIAVVESELVAEYITTER 24 0 Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-7 EMSY Protein EMSY 1 HS(0.37)PES(0.312)PS(0.312)IAVVES(0.005)ELVAEYITTER;HS(0.333)PES(0.333)PS(0.333)IAVVESELVAEYITTER 144.01 1.5166e-07 59076000.0 28124.0 27845.0 26691.0 26924.0 26391.0 31903.0 31787.0 23674.0 36633.0 29241.0 True False 27972.58350887015 28771.80399234203 30448.860797669062 30332.57563942007 29751.737418287816 29697.620701584015 30249.341371867886 25440.674094136175 27605.288007050887 27374.81434552041 1.0218364645620897 1.0510319313654166 1.112294695896328 1.1080468074255145 1.086828828965423 1.0848519491948154 1.1050062656157469 0.929345995666972 1.0084191862863972 1.0 14.74056156001832 1.7466489655608135 24.99999999999216 0.975975201908892 1.0827979333359297 0.6745767347008913 0.03248185842089126 1.008530692979308 3125.2894541540063 0.015213491282214362 0.008436640747517654 55.801897310740046 -1.7466489655608135 0.10682273142703769 HS(ph)PGPTPQPDCSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSPGPTPQPDCSLR 14 0 Q4ZG55;Q4ZG55-4 Q4ZG55 GREB1 Protein GREB1 1 HS(0.999)PGPT(0.001)PQPDCSLR;HS(1)PGPTPQPDCSLR;HS(1)PGPTPQPDCSLR;HS(1)PGPTPQPDCSLR 200.9 1.1981e-08 4365190000.0 1644060.0 1723110.0 1641320.0 1604060.0 1710950.0 1948960.0 1857210.0 1488570.0 2228450.0 1954650.0 True False 1635208.5636322377 1780462.674708008 1872403.5893908113 1807133.8315320208 1928829.3409048344 1814232.982558355 1767369.657068825 1599654.6522053005 1679278.357200135 1829902.5635399425 0.8936041711799837 0.9729822287716275 1.0232258409260058 0.9875574074480361 1.054061226721011 0.9914369315100172 0.9658271933615156 0.8741747697816064 0.9176873078704119 1.0 20.803335400980956 -0.4411345931522553 5.27738696401176 0.999999996519252 0.9640309052410957 0.03861298561607107 0.05308410089009534 6968021.118750587 2640709.196493686 0.07761738362140126 0.01399413205637468 0.3621307522913148 0.4411345931522553 -0.035969091278156284 HS(ph)PIKEEPCGSLSETVCK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPIKEEPCGSLSETVCK 18 1 J3QQY0;Q68DK7;J3KSZ8;Q68DK7-2;Q68DK7-3;J3KTC2 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 HS(0.988)PIKEEPCGS(0.012)LSETVCK;HS(1)PIKEEPCGSLSETVCK 220.04 4.2266000000000005e-19 814900000.0 1148980.0 692760.0 615800.0 571210.0 526760.0 1101990.0 991900.0 798580.0 1556350.0 870340.0 True False 1142794.0193436786 715818.097817736 702499.2873704471 643525.1274325199 593839.7636488685 1025812.0251054305 943918.0075740325 858174.0947070747 1172808.39652154 814794.1560644384 1.4025554931119317 0.8785263032263638 0.8621800759637377 0.7898008627612523 0.7288218247872466 1.25898304187678 1.1584741993404557 1.0532403654588873 1.4393922536047101 1.0 19.636076107358324 2.723786971904719 24.950049813262762 1.172282326260068 0.9175644878981669 0.27110646355959644 0.20363267132054352 1068.649203800678 1804755.1571217603 0.06569949132679673 0.0621817943180153 529.4036995692871 -2.723786971904719 -0.254717838361901 HS(ph)PPFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSPPFSK 7 0 Q8WV28-3;Q8WV28;Q8WV28-2 Q8WV28-3 BLNK B-cell linker protein 1 HS(1)PPFSK 120.99 0.0065836 0.0 246410.0 210030.0 173320.0 160600.0 155890.0 256340.0 243700.0 185390.0 270900.0 197790.0 True False 245083.3559387247 217020.72158418412 197721.9494755537 180931.94353331105 175741.66746757933 238619.81915945376 231911.29997559404 199224.74319134516 204140.32487402315 185166.87286346138 1.3235810064116849 1.1720277943248045 1.0678041186198042 0.9771291199950594 0.9490988574245026 1.2886744560157237 1.2524448698045527 1.0759200072372006 1.1024667734414484 1.0 17.498466491876886 7.993404978010865 0.012291439216419866 9.240417733123642e-06 2.4277433791103786 0.11360367513878811 0.11876565214595061 26611.224918686905 25.29502157878482 2079.738588890489 2993.3244636298323 98492912.04628797 -7.993404978010865 2.4277341386926454 HS(ph)PPMVR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPPMVR 7 0 O60256;O60256-2;O60256-3;O60256-4;E7EPA1;I3L0S1;C9K0K7;I3L4G9 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 HS(1)PPMVR;HS(1)PPMVR 95.358 0.0087116 738150000.0 569550.0 514610.0 451790.0 412790.0 525550.0 469140.0 534010.0 436360.0 602220.0 476760.0 True False 566483.606082954 531738.4827616864 515398.1049709236 465049.17167568736 592475.6773210996 436709.456036772 508177.8961836963 468923.3989911831 453810.9503345662 446332.7686252286 1.2691956448275306 1.1913498630170491 1.1547395602577568 1.041933741741858 1.3274303814752677 0.9784391528811612 1.138562821073971 1.0506138736699457 1.0167547225635516 1.0 18.76776020394314 7.999999999996768 0.14688062077082406 0.9579200545531491 2.014195871713825 0.4248310127080489 0.08574966596470528 65.6755197238569 0.6353029465580963 0.297450468145427 14.729083107908492 99999999.99925579 -7.999999999996768 1.0562758171606759 HS(ph)PQQPSNGSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSPQQPSNGSLR 12 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 HS(1)PQQPSNGSLR 146.79 6.8223e-05 163590000.0 140870.0 134050.0 125560.0 137230.0 137830.0 148270.0 153250.0 94199.0 178720.0 122820.0 True False 140111.5715721285 138511.77321506382 143237.75661291552 154603.30392949094 155381.833517586 138020.44389003748 145836.71202814835 101228.60771282975 134676.850725306 114981.5224485077 1.2185572828440745 1.2046437572358089 1.2457458690987662 1.3445925974647543 1.3513635078816322 1.2003706417424358 1.2683491131669313 0.8803902188559302 1.1712912462575755 1.0 16.81104251287845 1.7575494187791432 24.999999999937774 1.0109773692034527 1.2633688147802544 0.6522704946498434 0.08183842026792455 4.557555325224339 6006.1236587155445 0.036895319210716 0.02046055958578958 57.22020623608538 -1.7575494187791432 0.2523914455768017 HS(ph)PS(ph)PRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSPSPRPR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 HS(1)PS(1)PRPR 55.31399999999999 0.070963 94755000.0 46761.0 56424.0 33475.0 57307.0 51893.0 49409.0 51951.0 41452.0 63380.0 47139.0 True False 46509.24397163551 58302.038730971755 38187.98903008399 64562.060324180886 58501.26595609144 45993.47212627545 49437.931657907575 44545.35872899097 47760.848248488655 44130.548662271685 1.053901330970703 1.3211265324878145 0.8653413607506735 1.462978872487407 1.3256410293875553 1.0422139202995322 1.1202655112279014 1.009399612723916 1.0822627340076696 1.0 15.42949006358254 2.70729802734134 23.697440842187696 1.053684541889026 1.207578580317544 0.19795387252618868 0.15589378283983227 602.8904385963956 456997.2961682093 0.04953450219967816 0.046708239866141844 509.68051082200196 -2.70729802734134 0.15389403842851812 HS(ph)PTLPEPGGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPTLPEPGGLR 12 0 Q86XN8-2;S4R446;Q86XN8;Q86XN8-3 Q86XN8-2 MEX3D RNA-binding protein MEX3D 1 HS(0.903)PT(0.097)LPEPGGLR;HS(0.963)PT(0.037)LPEPGGLR 103.76 0.0014242 914300000.0 486040.0 505930.0 474110.0 492800.0 462960.0 515000.0 492510.0 417835.0 532400.0 486260.0 True False 483423.21464412 522769.57420885714 540860.5669620049 555188.4294720774 521915.2118210954 479399.2621795997 468685.40972909244 449015.96942313906 401197.15379449906 455226.47049186967 1.0619400363994298 1.148372531245838 1.1881131744768885 1.219587316335536 1.146495745858471 1.0531005845543462 1.0295653704466712 0.9863573375642674 0.8813133238078352 1.0 18.796224924297974 2.286670299453756 1.33703962824498 0.9528124542078211 1.1590748862591238 0.7510183329007022 0.0493418856108447 0.21836815417537322 0.7681872654895505 0.03048561040940356 0.018520283434230872 193.49524608163074 -2.286670299453756 0.20626243205130268 HS(ph)PTPQQSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPTPQQSNR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 HS(0.936)PT(0.064)PQQSNR;HS(0.999)PT(0.001)PQQSNR 113.76 0.00093128 767350000.0 345890.0 363520.0 320680.0 323100.0 309920.0 295210.0 357090.0 287420.0 346270.0 325635.0 True False 344027.76667199144 375619.5434475192 365828.95659947215 364004.4268718103 349386.474960242 274802.8275495914 339816.1924837288 308868.7398891875 260936.39828028 304852.69550985045 1.1285049197174482 1.2321345652506526 1.20001876968036 1.1940338144723688 1.1460829446691 0.9014282359878689 1.1146898075327945 1.013173721074109 0.8559425654540377 1.0 18.217752776808105 2.899174422995582 5.368205553718939 0.9928505750638422 1.1902288350085457 0.6811125961031101 0.06948624153047249 0.13998742113443713 6.015266685841728 0.021336574440173645 0.02281985236273596 792.8196817924561 -2.899174422995582 0.19737825994470348 HS(ph)PVQMNR ddPTM_BT-474_Trastuzumab_2h_R1 3 HSPVQMNR 8 0 Q0JRZ9;Q0JRZ9-3 Q0JRZ9 FCHO2 F-BAR domain only protein 2 1 HS(1)PVQMNR;HS(1)PVQMNR;HS(1)PVQMNR 111.27 0.0021041 1155580000.0 609480.0 671670.0 622740.0 664100.0 591090.0 674440.0 621960.0 537980.0 725300.0 664490.0 True False 606198.6273995943 694026.1299169103 710416.3790468861 748174.9919082935 666361.8078350849 627817.5502609898 591873.4186820692 578126.7994070873 546559.5335220696 622081.6793014901 0.9744678995855814 1.1156511323339464 1.1419985553096235 1.2026957500956923 1.0711805700230799 1.0092204466878696 0.9514400413570441 0.9293422690991994 0.878597701407601 1.0 19.246744493035102 2.551247897261289 1.9825673769885646 0.9319128541322244 1.112386129808963 0.6153814819136441 0.0604399222456431 0.21275571356696263 1.6760273191864485 0.02475046106017804 0.02131098619402804 355.83437248617065 -2.551247897261289 0.18047327567673865 HS(ph)S(ph)ISPVRLPLNSSLGAELSR ddPTM_BT-474_Trastuzumab_2h_R1 9 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 HS(0.632)S(0.632)IS(0.632)PVRLPLNS(0.048)S(0.056)LGAELSR;HS(0.76)S(0.806)IS(0.434)PVRLPLNSSLGAELSR;HS(0.868)S(0.868)IS(0.264)PVRLPLNSSLGAELSR;HS(0.648)S(0.689)IS(0.599)PVRLPLNS(0.028)S(0.037)LGAELSR;HS(0.665)S(0.701)IS(0.624)PVRLPLNS(0.006)S(0.004)LGAELSR;HS(0.756)S(0.756)IS(0.488)PVRLPLNSSLGAELSR;HS(0.667)S(0.707)IS(0.62)PVRLPLNS(0.004)S(0.002)LGAELSR;HS(0.717)S(0.717)IS(0.565)PVRLPLNS(0.001)SLGAELSR;HS(0.722)S(0.769)IS(0.509)PVRLPLNSSLGAELSR 207.6 4.7497e-22 1504552000.0 322351.0 371725.0 271516.0 348971.0 349649.3 374265.0 365451.0 308711.7 427461.0 348136.1 True False 320615.4980325629 384097.64191249193 309743.09274062107 393150.6928191973 394175.06582123233 348392.9414750442 347772.7389716078 331749.33466024924 322118.96423394105 325917.7560436893 0.9837313005726032 1.1785109426839684 0.9503719481276128 1.20628804515485 1.2094310865603564 1.068959683891362 1.067056742146288 1.0178927919955922 0.9883443238691204 1.0 18.31414842687649 1.8587091513937153 1.7782971989607932 0.9956944961893779 1.106255448287054 0.2255330417711886 0.08149232372936711 0.5120690411946967 3.0576955048137955 0.05427468948324152 0.024163160702907003 72.22859240616746 -1.8587091513937153 0.11056095209767602 HS(ph)S(ph)PHQS(ph)EDEEDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSPHQSEDEEDPR 14 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 3 HS(1)S(1)PHQS(1)EDEEDPR 88.071 0.0031573 97491000.0 147440.0 173140.0 96590.0 135460.0 143570.0 149900.0 152190.0 103450.0 128020.0 130050.0 True False 146646.1994221238 178902.8602346597 110189.03242466964 152609.22211097338 161852.78849394026 139537.76582664475 144827.98827774174 111169.9643084561 96471.18638011225 121750.09765859347 1.2044852714068695 1.4694268314784569 0.9050426615152056 1.2534628312078548 1.3293852868011742 1.1460998266952585 1.1895513109473006 0.9130995904429929 0.7923705051196979 1.0 16.89356340396424 1.7328328940203432 3.49655048403496 0.8803399605892696 1.2185049563750538 0.5030315535749488 0.14224907166659137 0.1639374811710727 4.332062225843659 0.07784774393523107 0.03747845391861568 54.05462938268962 -1.7328328940203432 0.3381649957857843 HS(ph)SADNLANEMTYITETEDVFYTYK ddPTM_BT-474_Trastuzumab_2h_R1 4 HSSADNLANEMTYITETEDVFYTYK 25 0 J3KN34;P26045-2;P26045;P26045-3 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 HS(0.567)S(0.433)ADNLANEMTYITETEDVFYTYK;HS(0.497)S(0.497)ADNLANEMT(0.003)Y(0.003)ITETEDVFYTYK;HS(0.494)S(0.494)ADNLANEMT(0.007)Y(0.005)ITETEDVFYTYK;HS(0.496)S(0.496)ADNLANEMT(0.004)Y(0.004)ITETEDVFYTYK 301.68 1.8086999999999993e-63 376314000.0 225674.0 202313.0 195765.0 191893.0 193255.0 246583.0 245381.0 202047.0 290762.0 220534.0 True False 224458.99625873854 209046.86590420874 223327.01038011638 216186.63412476736 217864.87873787302 229537.29760394618 233510.98358355035 217124.7731138773 219107.60111118708 206459.33131134335 1.087182617676173 1.01253290212862 1.081699766058703 1.0471148615644554 1.0552435550095334 1.1117797202287794 1.1310265421300467 1.0516588024130056 1.061262766470797 1.0 17.655498099695247 HS(ph)SEEDKDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSEEDKDKK 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 HS(0.738)S(0.262)EEDKDKK 142.91 1.8216e-05 133280000.0 347250.0 130080.0 112400.0 108240.0 99750.0 140480.0 193950.0 172350.0 444980.0 178500.0 True False 345380.4445831017 134409.63416497933 128224.9430016862 121943.17290190265 112452.57123542912 130768.94825434983 184567.89753904968 185211.63217556666 335320.6414265142 167107.97717846156 2.06681003752595 0.8043280544377466 0.7673179052652254 0.7297268207111051 0.6729335914068084 0.7825416264520767 1.1044828658415387 1.1083350735421293 2.0066106184051966 1.0 17.35042107893771 1.4466348333232708 5.27587832814845 1.5273713570492995 0.9561743576990345 0.16456353783985467 0.44637002746180304 0.276978802920943 15.449941066600337 0.2814888637367337 0.10978159607339875 27.966288487485695 -1.4466348333232708 -0.571196999350265 HS(ph)SIS(ph)PVRLPLNSSLGAELSR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 HS(0.585)S(0.585)IS(0.831)PVRLPLNSSLGAELSR;HS(0.5)S(0.5)IS(0.999)PVRLPLNSSLGAELSR;HS(0.5)S(0.5)IS(1)PVRLPLNSSLGAELSR;HS(0.518)S(0.518)IS(0.965)PVRLPLNSSLGAELSR 234.48 1.1817e-29 1825730000.0 437730.0 474747.0 329141.0 467412.0 477648.0 479809.0 493833.0 413228.0 595371.0 468696.0 True False 435373.3103163745 490548.6669043781 375481.1918551423 526586.3112751676 538473.6415584987 446640.93317889667 469944.41116474173 444065.17168926715 448649.7946126685 438783.4200091659 0.9922282621965978 1.1179744824773252 0.8557324063140279 1.2001053076804216 1.227196874365149 1.0179074978939875 1.0710167926466432 1.012037263577532 1.022485750722524 1.0 18.743149487136737 -0.5404443495826876 5.943650650416901 0.999997053844152 1.0584885786452616 0.027945208732272575 0.10139751636654018 0.0 0.0 0.09669922241536504 0.022792225131974965 0.28810822074819176 0.5404443495826876 0.05849152480110953 HS(ph)SLIDEMFK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSLIDEMFK 10 0 A0A1B0GV68 A0A1B0GV68 1 HS(0.5)S(0.5)LIDEMFK 96.64 0.0042527 46240000.0 102590.0 99653.0 100530.0 88634.0 105780.0 156340.0 112950.0 90783.0 150990.0 110650.0 True False 102037.66683882059 102969.88986348933 114683.75017757571 99855.0553121512 119250.45599281898 145532.58378477395 107486.17698909862 97557.68844673331 113780.537662343 103588.22226776894 0.9850315470716327 0.9940308618997122 1.107111867226812 0.9639614728982631 1.151197050998367 1.404914386971344 1.0376293234500513 0.9417835957697287 1.09839260845917 1.0 16.66050045582226 4.249858321983788 22.158223682806856 1.0848648847839002 0.9895308606343715 0.09232262654141998 0.12331796427271327 153.04384581691738 300138.4879294473 0.03270797221228377 0.08734748277565513 17776.993842294894 -4.249858321983788 -0.09533402414952874 HS(ph)SNPPLESHVGWVMDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 HS(0.55)S(0.45)NPPLESHVGWVMDSR;HS(0.5)S(0.5)NPPLESHVGWVMDSR;HS(0.5)S(0.5)NPPLESHVGWVMDSR;HS(0.539)S(0.46)NPPLESHVGWVMDSR 232.59 1.0292e-20 1812049000.0 297084.0 312256.0 272783.0 293994.0 295053.0 320979.0 296952.0 247625.0 340273.0 296155.0 True False 295484.5327531356 322649.2521972618 311188.4753276595 331213.61025611585 332626.2506338551 298790.477233293 282587.2972931989 266104.034914272 256417.2785745974 277254.13434894796 1.0657533870396434 1.1637310763820035 1.1223943551225906 1.1946209964871264 1.1997161067225661 1.077677265065558 1.0192356480337952 0.9597838298755805 0.9248456445084942 1.0 18.080849448115963 2.248669501849859 2.050115193511362 0.9605383356350329 1.1504347292390908 0.8012428120783224 0.04100148300823749 0.13332347192734167 1.1359052039720448 0.019569514028974243 0.01304838827521205 177.2839836098401 -2.248669501849859 0.18989639360405797 HS(ph)SPHISR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSPHISR 8 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 HS(0.5)S(0.5)PHISR 51.268 0.096823 28848000.0 13799.0 21573.0 16473.0 21266.0 21169.0 16214.0 17994.0 25938.0 20065.0 22842.0 True False 13724.707717213018 22291.044263846106 18792.255214117227 23958.273419547902 23864.746671506757 15093.164343650547 17123.561476244708 27873.625270495242 15120.249607225069 21384.204003979918 0.6418152256057156 1.0424070149956206 0.8787914299087172 1.120372468158689 1.1159988310560998 0.7058090327253465 0.8007574877726455 1.3034679834380343 0.7070756341648707 1.0 14.38425788552994 4.745353603290371 24.071487780049342 0.9795534600004011 0.6418149627423697 0.21182782489786056 0.18412978017404913 721.8557631519807 2557837.9042379996 0.043786991858123236 0.42395218823296255 55635.70597536419 -4.745353603290371 -0.3377384972580314 HS(ph)SPHQSEDEEDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSPHQSEDEEDPR 14 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 1 HS(0.549)S(0.451)PHQSEDEEDPR 88.992 0.0040747 201410000.0 131530.0 160020.0 192550.0 173890.0 193760.0 223860.0 202860.0 127830.0 203340.0 165970.0 True False 130821.85709435679 165346.1689658671 219659.3663253973 195904.45617065643 218434.18749450383 208385.08510975767 193046.88679954456 137369.32370758735 153229.581616404 155377.65250593433 0.8419605714493615 1.0641566937018312 1.4137127365662052 1.2608277510382278 1.4058275689688464 1.3411522297377922 1.242436628988017 0.884099621097962 0.9861751619046485 1.0 17.2454194946735 1.7591763678225103 9.555106126720288 0.9535794743964023 1.2383987147935853 0.35914623642036014 0.16294380994745553 0.1714845014257813 60.12609963260856 0.08197350969785272 0.04480080081034824 57.434965935205625 -1.7591763678225103 0.284819240397183 HS(ph)SVSDSQPCEPPSVGTEYSQGASPQPQHQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSSVSDSQPCEPPSVGTEYSQGASPQPQHQLK 32 0 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 HS(0.536)S(0.451)VS(0.012)DS(0.001)QPCEPPSVGTEYSQGASPQPQHQLK;HS(0.463)S(0.401)VS(0.111)DS(0.025)QPCEPPSVGTEYSQGASPQPQHQLK 149.72 5.2327e-10 777150000.0 437530.0 369170.0 368660.0 407710.0 399990.0 483390.0 427670.0 389560.0 570660.0 462060.0 True False 435174.3870941524 381457.60028202273 420564.1235498361 459326.04419655196 450926.3555735264 449974.38707766397 406981.96824194555 418630.9453455985 430028.4894522329 432570.9352105317 1.0060185548119491 0.881838258727133 0.9722431382153498 1.0618513792957416 1.042433318720457 1.040232596437997 0.9408444606752601 0.9677740949975092 0.9941224766822084 1.0 18.722577207151616 4.00087196605132 24.996956981565784 1.003187049419217 0.9397064717221887 0.24855209168355097 0.04396949820259672 41.90183071552945 1201049.9324553006 0.011660240318636422 0.024855377955571314 10020.097929632855 -4.00087196605132 -0.0634805776970283 HS(ph)SYPAGTEDDEGMGEEPSPFR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSSYPAGTEDDEGMGEEPSPFR 22 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 1 HS(0.607)S(0.393)YPAGTEDDEGMGEEPSPFR;HS(0.629)S(0.371)YPAGTEDDEGMGEEPSPFR 353.45 1.3312999999999994e-95 3506500000.0 550180.0 566210.0 531110.0 574880.0 555810.0 603830.0 594780.0 486700.0 662750.0 571770.0 True False 547217.892010744 585055.9575688266 605885.6715091235 647659.7490562256 626589.1089560288 562088.6533629283 566008.2191197531 523020.02541252365 499424.14289501123 535279.149083075 1.0223037698145347 1.092992242591587 1.131905983162237 1.2099476509885672 1.1705838159946382 1.0500850898559706 1.0574075603156157 0.9770976999729001 0.9330162472244943 1.0 19.029931930376986 2.070026086398816 1.5679748797977957 0.9647223142148664 1.125461196818159 0.6132317391851004 0.05161833774012209 0.27160000896145314 1.2610585379582788 0.034909273433747195 0.01796420122610366 117.49681286353992 -2.070026086398816 0.1607388826032925 HS(ph)YPPALGSPGALAGAGVGAAGPLER ddPTM_BT-474_Trastuzumab_2h_R1 2 HSYPPALGSPGALAGAGVGAAGPLER 26 0 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 HS(0.954)Y(0.046)PPALGSPGALAGAGVGAAGPLER;HS(0.957)Y(0.04)PPALGS(0.004)PGALAGAGVGAAGPLER 201.51 3.4509e-25 781600000.0 329130.0 211984.0 185720.0 251270.0 200302.0 292350.0 232130.0 210803.0 385240.0 268150.0 True False 327358.000649781 219039.75929296608 211867.76169282166 283080.7562367066 225809.27241703143 272140.5326178761 220900.98507728576 226534.19029594463 290302.7639515265 251036.43742523514 1.3040258378717486 0.8725416976896094 0.8439721494849572 1.127648078263599 0.8995079548333815 1.0840678564797044 0.8799558635509857 0.9023956546683073 1.1564168410332298 1.0 17.93753725804485 4.748444524139236 24.80531704386005 0.965606978327872 1.3040260420702154 0.454080438340835 0.10818439672370858 1070.8656451745846 2687455.68414589 0.024712795252131912 0.3305510736139387 56033.08373136703 -4.748444524139236 0.33841906374234343 HSAS(ph)PVVFTSAR ddPTM_BT-474_Trastuzumab_2h_R1 5 HSASPVVFTSAR 12 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 HS(0.001)AS(0.999)PVVFTSAR;HSAS(1)PVVFTSAR;HS(0.001)AS(0.999)PVVFTSAR;HSAS(1)PVVFTSAR;HSAS(1)PVVFTSAR 184.02 9.5702e-06 1961940000.0 1206351.0 1370275.0 1199537.0 1215379.0 1219650.0 1376171.0 1405592.0 1131262.0 1656423.0 1306639.0 True False 1199856.1402541972 1415883.775026271 1368421.383037486 1369245.856784383 1374965.1980680805 1281039.5379280811 1337598.1450771235 1215682.5148720413 1248219.7465810387 1223248.1803500713 0.9808771102449712 1.157478750241076 1.1186784538243653 1.1193524574813019 1.124027993791571 1.0472441802950168 1.0934805925436386 0.9938151017924549 1.0204141454139102 1.0 20.222285706007344 1.9170117356152334 1.4295166489224602 0.9997535402377704 1.1021979572444445 0.38919579365634205 0.04776516116455621 0.3802365171578735 1.446311289199079 0.03288820091787898 0.014605915160736598 82.60602712849767 -1.9170117356152334 0.10244441700667406 HSATPFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSATPFLK 8 0 P08243-2;P08243;P08243-3;F8WEJ5;C9J057 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ; 117.02 0.0021596 825610000.0 830180.0 913690.0 874760.0 808140.0 786180.0 907860.0 865920.0 821680.0 1322110.0 909810.0 False True 825710.4031216699 944101.6193127305 997918.6044497775 910450.4411395384 886295.3629460617 845101.7750725666 824032.1414643661 882997.9340064977 996293.7058663517 851745.1468724711 0.9694336459134538 1.1084320501025262 1.1716164255400126 1.0689235441876337 1.0405640304502535 0.9922002821802997 0.9674632658491046 1.0366926506699614 1.1697086969319983 1.0 19.70006229650253 3.291904226729002 3.8729666453147513 1.0293332657180545 1.0901322434804779 0.08939353508272374 0.06897148970013471 0.46452818687425435 14.23552945521496 0.02034685255043373 0.02735071336596455 1958.4127447452067 -3.291904226729002 0.06079897776242338 HSCDALNR ddPTM_BT-474_Trastuzumab_2h_R1 6 HSCDALNR 8 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;Q6XYB5;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ;;;;; 182.09 0.00023041 632400000.0 256065.0 425048.0 402752.0 466193.0 368833.0 286257.0 321576.0 219903.0 291617.0 281148.0 False True 254686.3744914958 439195.4657330577 459455.98081686016 525212.9860001551 415801.6963055337 266468.7273664965 306020.14034038386 236313.2785048079 219751.89781760055 263204.89393708704 0.9676354063248255 1.6686447549035206 1.745620964504871 1.9954529649653663 1.5797643048571937 1.0124003523665088 1.1626688841641781 0.8978301085894439 0.8349080996576268 1.0 18.00582678871181 2.7427785562505407 4.75600114258945 0.9797959076949666 1.6310968699542174 0.5876454637416682 0.2548177211933492 0.13639251382736217 8.932878929445932 0.08415119081104848 0.08454956518374818 553.068031746985 -2.7427785562505407 0.6513009622592508 HSCSGS(ph)SPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HSCSGS(0.596)S(0.404)PPR;HSCS(0.001)GS(0.883)S(0.116)PPR;HSCSGS(0.825)S(0.175)PPR 118.37 0.00053711 945066000.0 9254.8 9953.2 11849.7 12368.0 12984.5 8907.800000000001 13548.3 6125.299999999999 5528.9 8536.900000000001 True False 9204.973185104942 10284.486245163549 13518.034760561204 13933.787531880398 14637.999109838887 8292.024752705714 12892.91696946794 6582.400989643163 4166.376678464324 7992.067733192198 1.1517636602196668 1.2868367221727375 1.6914314557694345 1.7434521324201733 1.8315659474512695 1.037531841511772 1.6132141768420976 0.8236167671984951 0.5213139850105082 1.0 12.964353094760186 1.6639210760088055 4.924427606092614 0.7343358387630136 1.4864291711500113 0.5868693798118136 0.26779775647251486 0.10547252235036172 5.764698776715043 0.14899361633761593 0.07149940154944938 46.123374730118464 -1.6639210760088055 0.7520933323869977 HSCSGSS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 7 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HS(0.001)CS(0.009)GS(0.046)S(0.944)PPR;HSCS(0.001)GS(0.029)S(0.971)PPR;HSCS(0.009)GS(0.025)S(0.966)PPR;HS(0.001)CS(0.018)GS(0.103)S(0.878)PPR;HSCSGS(0.266)S(0.733)PPR;HSCSGS(0.364)S(0.636)PPR;HSCSGS(0.096)S(0.904)PPR 135.65 8.923299999999999e-05 9015310000.0 615821.5 709249.7 646991.4 680329.2999999999 666124.98 615315.8 717011.3 579704.6 719347.4 654611.4 True False 612505.9854682008 732856.647514002 738082.1653699392 766458.9196242652 750952.0477709144 572780.4670435935 682326.724169842 622965.100932312 542073.8720313169 612833.540010984 0.9994655081332895 1.1958494430655129 1.2043762574690515 1.2506804369919564 1.225376874375144 0.9346428183962114 1.1133965092015237 1.0165323211930377 0.8845368874908528 1.0 19.225135731692127 2.743522063832867 24.99499637291073 1.0032639530035823 1.1821195424525839 0.5414829914702071 0.08469889688062364 342.8066715702294 1727007.3117531156 0.026620729898904894 0.027426224255356856 554.0156893550902 -2.743522063832867 0.1788555894490016 HSDELTSLLGYFPNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSDELTSLLGYFPNKK 16 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;A0A494C0Y7;H7C0P8 Q92878-2 RAD50 DNA repair protein RAD50 0 107.61 0.00072358 609880000.0 489620.0 485500.0 452850.0 423840.0 435880.0 528850.0 525280.0 517300.0 697290.0 516000.0 False True 486983.9403218955 501659.5740090521 516607.34375723824 477498.1005427059 491386.7343368301 492291.84427899285 499870.19963553525 555903.5527961742 525452.222707299 483068.43823017477 1.0081054810909735 1.038485511177236 1.069428890138094 0.9884688436531334 1.017219705218439 1.0190933733584624 1.0347813271902369 1.1507759745862234 1.0877386745290303 1.0 18.881868070331866 1.9247541299431736 10.328368682440175 1.0955366534019064 1.0245776872189758 0.2563255657509347 0.04012990320187494 0.5886583007128123 78.65158863235968 0.016046683095233483 0.010217632017839474 84.0918931765704 -1.9247541299431736 -0.07095896618293063 HSDENDGGQPHKR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSDENDGGQPHKR 13 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 ;;; 70.563 0.01816 188855000.0 104368.0 106608.0 97425.0 93216.0 97483.0 94428.0 112098.0 76503.0 139010.0 104517.0 False True 103806.09428437483 110156.38283410313 111141.59316671947 105017.13604234814 109896.88222299068 87900.41461960247 106675.39148405466 82212.04233436256 104752.84813856734 97846.6355784943 1.060906117728491 1.125806545956644 1.1358754699088218 1.0732830558910893 1.1231544301268228 0.898348871168771 1.0902305516522106 0.8402132771178484 1.0705820135689055 1.0 16.5782346247023 2.752636068454155 24.832253350153444 0.9685557305358075 1.1051134483945646 0.41933021155678996 0.07229875975000098 616.6595780596797 1087924.5080778382 0.02083134196175891 0.021994177185131143 565.7649886962529 -2.752636068454155 0.13655771785875714 HSDGNLCVK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSDGNLCVK 9 0 P49458;Q6P2S0;Q659G3;E9PE20;P49458-2 P49458 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein 0 ; 98.044 0.006280699999999999 1853720000.0 2743500.0 2656800.0 2322700.0 2174510.0 1897410.0 2751100.0 2681000.0 2279500.0 3377900.0 2553500.0 False True 2728729.3008315032 2745229.9819304855 2649715.97072968 2449802.7430424676 2139033.916669831 2560922.9323928077 2551309.78758542 2449607.8650664603 2545461.8065410187 2390533.443838662 1.1414729661551082 1.1483754761959155 1.1084203726825208 1.0247933361302959 0.8947935542098173 1.0712767641855445 1.0672554254202724 1.0247118154234804 1.064809117438481 1.0 21.188901158621025 3.8509345653745566 3.453283002304685 1.0219305832028924 1.141905400615049 0.5386122014440629 0.04806943860293949 0.19765834172446717 4.35462199734973 0.013316748340823864 0.026061347051787094 7094.708647911591 -3.8509345653745566 0.11997481741215665 HSDLVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSDLVTK 7 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 99.375 0.010574 468220000.0 1250410.0 1144120.0 1155100.0 1036150.0 1029360.0 1256140.0 1437790.0 1149930.0 1617240.0 1232340.0 False True 1243677.9314936101 1182201.342564854 1317728.0396908142 1167326.4837611464 1160442.894505275 1169305.9984354998 1368238.604808818 1235743.6158262235 1218692.871905739 1153691.006140644 1.0779991565107132 1.024712281080862 1.1421845474022643 1.0118190031368244 1.005852423507415 1.0135348132313968 1.1859662574521441 1.0711218248637162 1.0563425262215929 1.0 20.137825447033276 HSDS(ph)KEDDGQEIA ddPTM_BT-474_Trastuzumab_2h_R1 1 HSDSKEDDGQEIA 13 1 H0YN29;H0YL10;A0A0C4DGH0;Q5ZPR3-2;Q5ZPR3 H0YN29 CD276 CD276 antigen 1 HS(0.165)DS(0.835)KEDDGQEIA 114.56 0.00044413 233510000.0 440600.0 364870.0 394560.0 338360.0 431560.0 662290.0 419900.0 315990.0 793240.0 481480.0 True False 438227.85855526204 377014.4773814272 450110.6184230011 381196.3413071678 486516.6079434767 616507.4511629653 399587.8328262285 339570.7783647075 597756.6308714277 450751.53418423317 0.9722160110854944 0.8364130763608941 0.9985781174047649 0.8456906131158358 1.07934542879365 1.367732341230332 0.8864924520986927 0.7533435886785392 1.3261333252104028 1.0 18.781972876479827 3.2311074489222955 24.987630220893667 1.0372714301799408 0.9138346152567737 0.13996111405595657 0.17899214677948813 451.260052710362 1512901.3483314768 0.0558064334049062 0.06795144079864672 1702.5796920200148 -3.2311074489222955 -0.12343681492316716 HSEEAEFTPPLKCS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSEEAEFTPPLKCSPK 16 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 HSEEAEFT(0.005)PPLKCS(0.995)PK 69.403 0.027968 233090000.0 1041500.0 865450.0 794880.0 810860.0 790920.0 1082500.0 1050800.0 1032600.0 1672900.0 1124900.0 True False 1035892.679721528 894255.9800744266 906792.1947791838 913514.7928606516 891638.9738498793 1007669.3229309059 999968.7895541822 1109657.8554365563 1260636.2107115265 1053107.9189246574 0.9836529201862729 0.8491589171483616 0.8610629342765949 0.8674465137375985 0.846673885768843 0.9568528588787467 0.9495406611083731 1.0536981400440353 1.197062701796772 1.0 20.006221855753946 1.8850042848248496 1.6212428381771322 1.1028468487911456 0.8834411902307598 0.6584899323090418 0.06146329934747907 0.2052769419868048 1.0115505795788524 0.040889501645893486 0.01816242449769228 76.73690603210076 -1.8850042848248496 -0.21940565856038574 HSEHVWVEVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSEHVWVEVVR 11 0 Q9Y2J8;Q9Y2J8-2 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 122.51 0.00022511 132860000.0 57782.0 92294.0 80287.0 86938.0 92803.0 76071.0 91437.0 40419.0 84751.0 67166.0 False True 57470.90813218374 95365.94999709885 91590.71173288592 97944.34188604592 104620.91196352399 70812.3908218725 87013.84298673942 43435.27102352325 63865.251655217166 62879.408376294356 0.9139861461204583 1.5166483346406927 1.4566089932776112 1.5576536805166745 1.6638342291236674 1.1261618493307721 1.3838209555983 0.6907709875956534 1.0156783167078027 1.0 15.9403000230906 1.753191658574974 24.999999999999986 0.8847221296168921 1.3914251748395388 0.48769353811333527 0.22095122455250407 3.719192575685762 6363.410565284059 0.10084132629401071 0.055921873759918375 56.64892313464938 -1.753191658574974 0.5067030452226466 HSEKS(ph)PPSTENKHEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSEKSPPSTENKHEAK 16 2 H3BQL3;Q6PH81 H3BQL3 C16orf87 UPF0547 protein C16orf87 1 HS(0.03)EKS(0.97)PPSTENKHEAK;HS(0.017)EKS(0.983)PPSTENKHEAK 173.56 1.9849e-09 255040000.0 276080.0 171537.0 154991.0 159031.0 144851.0 261990.0 281550.0 208498.0 461170.0 235114.0 True False 274593.6159553718 177246.50534869355 176812.38559407764 179164.3082941841 163296.91625085834 243879.24795812313 267930.3508745522 224057.1794913915 347520.8328613995 220108.82322877753 1.2475357049633748 0.8052676069439816 0.8032953109303652 0.8139805831770934 0.7418917327140956 1.1079939658059006 1.2172631107843859 1.0179382007713071 1.5788591650421573 1.0 17.7478574523481 2.5772490128950714 5.192826251431491 1.1831485684373022 0.8710657954220636 0.373645380694276 0.19741571456752957 0.24474693455522534 10.0992876676842 0.06337659657029907 0.05919235390236268 377.7887428453997 -2.5772490128950714 -0.31208277301523857 HSELSELNVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSELSELNVK 10 0 O75886;Q92783;Q92783-2 O75886;Q92783 STAM2;STAM Signal transducing adapter molecule 2;Signal transducing adapter molecule 1 0 145.89 2.9637e-05 390810000.0 370580.0 417490.0 384830.0 381340.0 378420.0 450790.0 428420.0 396010.0 549570.0 395720.0 False True 368584.838455309 431385.902271966 439010.7189976766 429617.604900329 426609.5439289329 419627.94834551803 407695.687876668 425562.2770980347 414135.83736071194 370464.8108070631 0.9949253686263518 1.1644450152557955 1.1850267722898842 1.1596718294631025 1.1515521352744884 1.1327066325985247 1.1004977422511382 1.1487252356598752 1.1178817131335925 1.0 18.498976986778523 0.8982168986085455 8.560061270978043 1.000000020879882 1.1337302221586656 0.370776591609849 0.05016218682440653 6.345062202386949 534.0309567312828 0.04632551092078285 0.011595922882669705 7.910736132775129 -0.8982168986085455 0.13373020127878354 HSETFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSETFTR 7 0 Q9UNS2-2;Q9UNS2 Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 0 138.26 0.0028028000000000003 159600000.0 50746.0 61898.0 59294.0 61986.0 65569.0 52230.0 58690.0 46673.0 64350.0 51736.0 False True 50472.789174410646 63958.237511868814 67642.07980731304 69833.42124443212 73918.82349208876 48619.46303619517 55850.940482427584 50155.97626069181 48491.804745822716 48434.16418658199 1.0420906403995185 1.3205190713208912 1.3965778277237688 1.4418215409976765 1.5261711383587153 1.0038257881131045 1.153131088775974 1.0355495362215175 1.0011900806013432 1.0 15.5637374252944 2.722863216719512 24.95387836925474 1.049981091843853 1.352247730535824 0.6013802552393053 0.1246191456391739 581.7250991376055 924756.8371820389 0.04181235960597444 0.03954286362662197 528.2788414328114 -2.722863216719512 0.302266638691971 HSEVQQANLK ddPTM_BT-474_Trastuzumab_2h_R1 5 HSEVQQANLK 10 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ;;;; 176.48 2.4819e-06 2741780000.0 4109050.0 4023060.0 3903230.0 3560150.0 3234090.0 4153970.0 4247800.0 3606720.0 5995800.0 4105720.0 False True 4086927.3313583746 4156965.120108879 4452770.856516648 4010864.6249695946 3645932.1915467554 3866815.8312935783 4042317.685828182 3875871.760953061 4518215.429603795 3843689.4345162646 1.0632824011892943 1.0815039016366421 1.1584627042265285 1.0434934177959592 0.9485501504898776 1.0060167183564934 1.0516764568771448 1.0083727697008502 1.1754892029075759 1.0 21.8740603421206 3.4997421582727624 24.379407933338634 1.0277842871232359 1.0994339376740265 0.2141730876672956 0.05949877483591687 814.4756626094787 877788.8472147044 0.01573753022894033 0.024170547729083846 3160.40076517431 -3.4997421582727624 0.07164965055079064 HSFATEGAGAVENFAAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSFATEGAGAVENFAAAR 18 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 0 ; 126.0 3.2217e-05 314800000.0 235750.0 253000.0 280650.0 291630.0 273590.0 261180.0 272690.0 247790.0 325960.0 304640.0 False True 234480.74819428724 261420.9520582704 320163.0805464695 328550.32809850207 308430.06480502285 243125.24135158802 259498.94292303923 266281.34805212467 245631.52564022315 285197.6143845743 0.822169388409056 0.9166309214135211 1.1226008367473441 1.1520093841159165 1.0814608862370103 0.852479926510697 0.9098917025761593 0.9336731256561563 0.8612678130925797 1.0 18.12160238844183 2.739152902048584 24.9999815402941 0.909497670480903 1.026436410865858 0.22920126402643248 0.09807066468842306 83.62179385283149 3529674.6911206343 0.03344451375380012 0.033594987464746644 548.4700307640479 -2.739152902048584 0.11693874038495489 HSGDYFTLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSGDYFTLLR 10 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 131.82 0.00024004 219000000.0 183480.0 194890.0 175420.0 162790.0 116760.0 158900.0 168420.0 126650.0 233360.0 170100.0 False True 182492.16406654456 201376.79583650723 200117.61122202655 183399.19730876523 131628.6939092601 147915.61701036582 160272.88117312072 136101.26611566884 175851.5548637948 159244.07237006343 1.1459903112905545 1.2645795403205502 1.2566722782432875 1.151686179455197 0.8265845751757175 0.9288610546622315 1.0064605783295122 0.8546708463934936 1.1042894862368104 1.0 17.280880145684634 3.3920032030438283 5.663585283432552 0.943460749111269 1.2232800772736585 0.7067941607920065 0.07999314228023904 0.09981652364005117 5.145397644237124 0.021530592927920658 0.02937994281507905 2466.0575250344073 -3.3920032030438283 0.2798193281623895 HSGNITFDEIVNIAR ddPTM_BT-474_Trastuzumab_2h_R1 6 HSGNITFDEIVNIAR 15 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 ;;;;; 262.42 5.33e-25 8608930000.0 3464860.0 3931930.0 3625530.0 4005540.0 3959200.0 3839370.0 3711810.0 3736200.0 4459390.0 3921860.0 False True 3446205.5787421325 4062801.913148126 4135973.1103283204 4512640.953302728 4463380.651983061 3573963.3888048376 3532255.5698088203 4015014.2160391775 3360433.0872645606 3671563.537126723 0.9386207112839587 1.106559064568872 1.1264882300157695 1.2290788127921686 1.2156621033108947 0.9734172792231548 0.9620575904763119 1.09354343876648 0.9152594128588483 1.0 21.807963135633468 2.7205162065904447 24.567443673016392 1.0005432228931552 1.1284084974377366 0.3799727389736084 0.08508103641555795 782.9696549117397 1066010.4080711107 0.028906169708294502 0.027303473348185114 525.4316223042309 -2.7205162065904447 0.1278652745445814 HSGPNS(ph)ADSANDGFVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSGPNSADSANDGFVR 16 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 1 HSGPNS(0.999)ADS(0.001)ANDGFVR 122.61 0.00082953 0.0 116820.0 134370.0 119290.0 127260.0 118800.0 131620.0 124310.0 102810.0 152100.0 124150.0 True False 116191.05409992211 138842.42422161964 136084.99511273237 143371.10295173837 133928.47581723274 122521.41920015326 118296.6503896842 110482.20425860191 114616.99303558093 116226.64070983733 0.9996938170999533 1.1945834739235317 1.1708588864103189 1.2335476795691607 1.1523044544631422 1.0541595149947678 1.0178101136469624 0.9505755615394877 0.9861507855305315 1.0 16.826581266198087 2.4776895833799566 2.0749428955627844 0.9783326931918704 1.1589067801796609 0.6264801814112043 0.0589288092637383 0.19616267193880124 1.7108075318607305 0.024073266427259803 0.01973076355958723 300.39284451737035 -2.4776895833799566 0.18057408698779043 HSGPNSADSANDGFVR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSGPNSADSANDGFVR 16 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ;;; 274.52 3.0999e-35 9090000000.0 4314400.0 4822300.0 4321920.0 4490600.0 4326520.0 4781500.0 4418900.0 4100440.0 4830400.0 4593200.0 False True 4291171.749774899 4982807.340358097 4930408.769197927 5059109.499568405 4877476.676706856 4450966.159440305 4205140.925162705 4406435.654412425 3640012.644043852 4300058.043563641 0.9979334479444893 1.1587767629826302 1.1465912132460165 1.1765212116475772 1.134281590456087 1.0350944369466233 0.9779265494932078 1.0247386453324767 0.8465031418569455 1.0 22.03592470323106 2.498309487576445 2.2176574278655665 0.968395885914846 1.1297149248915574 0.5863713783180573 0.06332550956780897 0.22339483183654665 2.2152775894697263 0.02474000829383284 0.020835979987555712 314.9992266612961 -2.498309487576445 0.1613190389767114 HSGS(ph)RSDEDRYQNGAER ddPTM_BT-474_Trastuzumab_2h_R1 1 HSGSRSDEDRYQNGAER 17 2 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 HS(0.105)GS(0.628)RS(0.267)DEDRYQNGAER 158.77 1.7202e-09 66733000.0 13440.0 19457.0 15126.0 19068.0 19143.0 19880.0 20738.0 14694.0 25443.0 19045.0 True False 13367.640533324384 20104.614482995126 17255.6093224511 21482.00684491392 21580.747580549552 18505.742392486303 19734.823713146758 15790.540894620135 19172.91356873298 17829.531794755178 0.7497471435148215 1.127601931134793 0.9678105696262362 1.2048553541508686 1.2103933983784056 1.0379264360677178 1.1068615788863312 0.8856396834416683 1.07534588061213 1.0 14.121981197697226 -1.8407006297551054 7.7573256447958 0.9975439366934231 1.0422645887147388 0.007958980068655142 0.1352452202087304 0.005942955979469195 0.0001220404612132552 0.1354675031751146 0.030231966247022533 0.014431097810609413 1.8407006297551054 0.0447206520213157 HSHS(ph)HS(ph)PMSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 HS(0.125)HS(0.875)HS(0.998)PMS(0.002)TR 59.24800000000001 0.053448 438740000.0 351850.0 546290.0 294250.0 451740.0 470650.0 413420.0 397550.0 64228.0 331680.0 185870.0 True False 349955.67869420984 564472.9324107211 335677.8423331508 508930.23768205463 530584.4877388946 384841.2484860003 378318.98771151935 69021.01950317557 249941.9082842967 174007.61746868715 2.0111514874179846 3.243955297027721 1.9290985487664434 2.9247583817624374 3.049202646742599 2.2116344909742405 2.174151874584446 0.39665516089027525 1.4363848659055054 1.0 17.408790938233516 1.9072245576495273 4.26934704201581 0.917825363051642 2.5794768803618346 0.70021008713107 0.4728416261124612 0.11469062819267707 3.4901481558761223 0.2127355486016947 0.12265645640181644 80.76525296204932 -1.9072245576495273 1.6616515173101927 HSLDS(ph)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 HS(0.173)LDS(0.739)DEEEDDDDGGS(0.028)S(0.028)KY(0.027)DILAS(0.005)EDVEGQEAATLPSEGGVR 76.964 0.00071486 479290000.0 116720.0 115880.0 83186.0 102750.0 96586.0 114760.0 119270.0 78937.0 171550.0 107210.0 True False 116091.59248881107 119736.9957490607 94897.86573432626 115758.13946480503 108885.65458992621 106826.91131598235 113500.45444435415 84827.67977396413 129273.80115222819 100367.76601290113 1.1566621147459715 1.1929825730471064 0.9455014244526297 1.153339802839944 1.0848667746169642 1.0643547780295415 1.1308456783800982 0.8451685550424676 1.288001180933045 1.0 16.614936483963646 7.999999998867267 0.4445598460371747 1.044291545922932 3.967289790834032 0.05001256547259347 0.11913111961754669 207.14636948355698 2.5271370551376275 0.07028584463116833 547.5880440456815 99999999.73917858 -7.999999998867267 2.9229982449111 HSLEEEDENEEEILTVQDLVDFSPVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLEEEDENEEEILTVQDLVDFSPVYR 27 0 Q8TAG9-2;Q8TAG9 Q8TAG9-2 EXOC6 Exocyst complex component 6 0 116.08 0.00068299 13696000.0 7986.2 7758.1 7070.3 8938.5 7890.8 7171.4 8005.8 5913.8 8349.5 5480.9 False True 7943.203186550233 8016.323668629519 8065.736783850722 10070.113183514948 8895.646607564142 6675.657997659775 7618.5288688740675 6355.117785667929 6291.877602567941 5131.104269565429 1.5480494586057147 1.5622998963746355 1.5719300096261417 1.962562570253093 1.7336709878081558 1.3010178018123104 1.4847737384840374 1.2385477768133848 1.2262229087581613 1.0 12.325053627606444 1.801817242293006 0.8291356665449787 1.0486555026031588 1.666835163517025 0.6919118281796954 0.14678171205785237 0.35568911767971184 0.4623979752828379 0.13827411422002764 0.06285908482236292 63.360302538218136 -1.801817242293006 0.6181796609138663 HSLPQEPVMPMDQS(ph)SMHSDHAQTVIPYNPSSHESLDQVGEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLPQEPVMPMDQSSMHSDHAQTVIPYNPSSHESLDQVGEEK 42 0 P41743 P41743 PRKCI Protein kinase C iota type 1 HSLPQEPVMPMDQS(0.214)S(0.214)MHS(0.214)DHAQT(0.214)VIPY(0.01)NPS(0.043)S(0.043)HES(0.049)LDQVGEEK 66.72 0.0011946 335910000.0 96411.0 120070.0 114710.0 131250.0 127900.0 156060.0 146530.0 51502.0 144560.0 110620.0 True False 95891.9338882691 124066.4573661523 130860.17092280606 147866.23654263432 144187.3068773071 145271.939525725 139441.78410104144 55345.340761856954 108935.12500475724 103560.13689345327 0.9259541051681545 1.1980136477976728 1.2636152756097663 1.4278296744119303 1.3923051011959617 1.4027785582707994 1.346481264740936 0.5344270722507678 1.0519020954639522 1.0 16.66010925184981 1.7576090737751273 24.999999999999996 0.8233855067155218 1.290595618991813 0.5045907404776839 0.18816444273699437 5.844547454695233 7678.021033989175 0.08701109111233139 0.04825285933762662 57.22806658376331 -1.7576090737751273 0.4672101122762913 HSLPQEPVMPMDQSSMHSDHAQT(ph)VIPYNPSSHESLDQVGEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLPQEPVMPMDQSSMHSDHAQTVIPYNPSSHESLDQVGEEK 42 0 P41743 P41743 PRKCI Protein kinase C iota type 1 HSLPQEPVMPMDQS(0.001)S(0.001)MHS(0.002)DHAQT(0.35)VIPY(0.079)NPS(0.268)S(0.268)HES(0.031)LDQVGEEK 90.338 0.00015293 274970000.0 36845.0 56607.0 72656.0 57754.0 58644.0 90034.0 67314.0 18693.0 73494.0 49254.0 True False 36646.630613864356 58491.12977534591 82885.33326272687 65065.65047834899 66111.96578977937 83810.16149723911 64057.76465554827 20087.96658113066 55382.38846914525 46110.56755152908 0.7947555746936174 1.2684972855730177 1.7975344408871474 1.41107893338414 1.4337703763003675 1.8175911932461102 1.3892209108890927 0.435647784180538 1.201078004673328 1.0 15.492809802808232 1.8594892529616978 8.475037457517624 0.830279190154321 1.444040938160498 0.36405582267117054 0.32259887027920126 0.28221828658092246 18.38647644790615 0.13723598870468104 0.08609715676342541 72.35844962583276 -1.8594892529616978 0.613761748006177 HSLS(ph)GSSPGMK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HSLS(0.466)GS(0.267)S(0.267)PGMK 83.397 0.065434 73650000.0 150620.0 148170.0 129960.0 126680.0 126250.0 168930.0 174200.0 136270.0 194600.0 140650.0 True False 149809.07865545506 153101.7488793437 148257.23836742982 142717.6750112071 142327.18915762307 157252.2667184463 165773.28049137635 146439.15936503912 146643.43750640418 131673.59658347664 1.137730589446466 1.162736895261172 1.1259450809748308 1.08387466215164 1.080909102892108 1.1942581565223187 1.2589713108222245 1.1121376127384932 1.1136890106395565 1.0 17.006606557335946 0.8026092126047848 2.07323607547457 1.0004158769299438 1.146182464657626 0.43157667490198215 0.04992229130563465 0.7430344162146337 5.525411952796484 0.05117877711740433 0.014091160026829181 6.34759504720398 -0.8026092126047848 0.14576658772768214 HSLS(ph)LDDIR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSLSLDDIR 9 0 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 HS(0.001)LS(0.999)LDDIR;HS(0.006)LS(0.994)LDDIR;HSLS(1)LDDIR;HS(0.001)LS(0.999)LDDIR 155.48 4.7157e-05 1920010000.0 1993570.0 2261850.0 2006290.0 2280660.0 2024840.0 2096130.0 2235100.0 1713660.0 2545880.0 1927160.0 True False 1982836.8406264489 2337134.3099328014 2288758.1930147028 2569391.322158662 2282691.3718330446 1951229.4668592708 2126979.674088838 1841542.01098916 1918481.9870442126 1804166.9988753144 1.0990317647216217 1.2954090787547545 1.2685955315896333 1.4241427338823818 1.2652328599603218 1.081512669323645 1.1789261611673196 1.0207159382347335 1.0633616445928566 1.0 20.782901454091743 2.7452430186213332 4.873198724370301 1.07399592484475 1.2816287475667738 0.5791365042534218 0.08572430951743772 0.13842262730538 9.830782246680311 0.027669395383286895 0.027884255551625645 556.2154122505544 -2.7452430186213332 0.20763282272202388 HSLS(ph)PVPWEEDSFLQVK ddPTM_BT-474_Trastuzumab_2h_R1 3 HSLSPVPWEEDSFLQVK 17 0 P10073 P10073 ZSCAN22 Zinc finger and SCAN domain-containing protein 22 1 HS(0.133)LS(0.867)PVPWEEDSFLQVK;HS(0.1)LS(0.9)PVPWEEDSFLQVK;HS(0.121)LS(0.879)PVPWEEDSFLQVK 230.05 5.8789e-16 521170000.0 704880.0 717460.0 640990.0 617030.0 652970.0 858650.0 786960.0 713840.0 1029380.0 787450.0 True False 701085.0043995307 741340.2223862717 731235.8204150429 695145.9347344891 736121.8590435899 799293.5465446864 748891.738320859 767110.3656060733 775703.0919853154 737194.266830137 0.9510179825653384 1.0056239660869337 0.9919173999538619 0.9429616669749052 0.9985452846898032 1.0842373340497753 1.0158675562426984 1.040581024733918 1.0522370111758501 1.0 19.491685325590066 2.9896262614502183 24.550713910249563 1.0393402688796407 0.975850705764957 0.5755335962667737 0.026693024553818626 274.606128428341 649891.720337844 0.007534896102359327 0.008490029739964293 976.3966067424915 -2.9896262614502183 -0.06348956311468368 HSLS(ph)STK ddPTM_BT-474_Trastuzumab_2h_R1 5 HSLSSTK 7 0 P42858;A0A3B3IU44 P42858 HTT Huntingtin 1 HSLS(0.946)S(0.054)TK;HSLS(0.97)S(0.03)TK;HS(0.002)LS(0.911)S(0.08)T(0.007)K;HSLS(0.888)S(0.11)T(0.002)K;HS(0.019)LS(0.929)S(0.048)T(0.004)K 105.52 0.0073516000000000015 614508000.0 1463400.0 1130410.0 1105740.0 1042110.0 997500.0 994140.0 1281400.0 1090990.0 1895620.0 1238600.0 True False 1455521.216999026 1168035.0135027263 1261418.5807356262 1174041.0191500557 1124525.7123542908 925417.4417538388 1219413.786576636 1172405.2137349688 1428469.8510066282 1159551.4875811895 1.2552450085983036 1.0073162132189863 1.0878504268636922 1.0124958069771366 0.9697936869539427 0.7980822340922942 1.0516253910555697 1.0110850844412196 1.2319158453122243 1.0 20.145135450738774 HSLSFNDCFVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSLSFNDCFVK 11 0 P55317-2;P55317;P55318 P55317-2 FOXA1;FOXA3 Hepatocyte nuclear factor 3-alpha;Hepatocyte nuclear factor 3-gamma 0 108.56 0.0020461 422990000.0 438210.0 486470.0 462300.0 414460.0 383870.0 491340.0 527700.0 441350.0 701720.0 533160.0 False True 435850.7260497084 502661.85987267504 527387.821616366 466930.5935044587 432753.56912425224 457374.82228995126 502173.13499023754 474285.77812988986 528790.5085662585 499133.2723387587 0.873215131516817 1.0070694296082139 1.0566072246500753 0.935482804655739 0.8670100614541782 0.9163380756944085 1.0060902825356346 0.9502187179539396 1.0594174699845929 1.0 18.929065551865044 2.223603634268002 24.81711944653134 0.9946979621621828 0.9469698926970671 0.19727336143968377 0.059043050988228804 503.9685759887426 836195.9914949607 0.023740008621393787 0.01760671099224296 167.34149102703248 -2.223603634268002 -0.04772806946511565 HSLSGRPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSLSGRPLK 9 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 123.75 0.00032987 3291400000.0 3800200.0 4429100.0 4425500.0 4016400.0 3949800.0 4606600.0 4872200.0 3908400.0 6390800.0 4602300.0 False True 3779740.1454419154 4576519.916052509 5048571.932864433 4524875.828189229 4452783.617701231 4288156.584769988 4636513.072388548 4200064.654453067 4815872.97233262 4308577.273772733 0.8772594537064551 1.0621881946764196 1.1717491905265833 1.0502018510224136 1.0334695967521144 0.9952604565950226 1.0761123168457563 0.9748147445375515 1.1177408843628982 1.0 22.038780127984 3.2023162811265213 5.6574436450393195 1.0288468343409336 1.0513281006718043 0.0 0.0774242753014424 1.106618868351114 90.87816761538456 0.022550170419680052 0.027762163339900146 1593.3686980087482 -3.2023162811265213 0.022481266330870664 HSLSGS(ph)SPGMK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HSLS(0.142)GS(0.578)S(0.28)PGMK;HSLS(0.005)GS(0.649)S(0.346)PGMK 184.98 4.8978e-06 332419000.0 1379060.0 1399740.0 1172880.0 1204160.0 1183430.0 1504140.0 1539420.0 1190310.0 1813810.0 1332580.0 True False 1371635.2941879712 1446329.499739301 1338011.3091442857 1356606.5325346936 1334132.795760839 1400162.3421647055 1464952.373444515 1279136.9764717072 1366820.829308791 1247533.6035208635 1.099477633561822 1.159351135438263 1.0725252653460162 1.0874308545324936 1.0694163203264186 1.1223443907347137 1.1742788886087232 1.0253326827122338 1.0956184470312207 1.0 20.250647245792504 0.9043044983759461 0.9801284008195688 1.002662077545331 1.107082552681232 0.36911617369528515 0.04057392817881244 0.7091412220423328 1.401351398462794 0.03834256319260803 0.012715294433322614 8.022403437647867 -0.9043044983759461 0.10442047513590103 HSLSGSS(ph)PGMK ddPTM_BT-474_Trastuzumab_2h_R1 9 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HSLSGS(0.031)S(0.969)PGMK;HSLSGS(0.01)S(0.99)PGMK;HSLSGS(0.064)S(0.936)PGMK;HSLSGS(0.002)S(0.998)PGMK;HSLSGS(0.146)S(0.854)PGMK;HSLSGS(0.004)S(0.996)PGMK;HSLS(0.002)GS(0.002)S(0.996)PGMK;HSLS(0.002)GS(0.144)S(0.853)PGMK;HSLSGS(0.009)S(0.991)PGMK 249.98 1.6762e-16 4903000000.0 8215810.0 8072690.0 7238700.0 7077520.0 7054480.0 8911830.0 9145140.0 7303070.0 10767500.0 7764360.0 True False 8171576.99182231 8341384.606605837 8257846.0400916925 7973533.306325527 7952826.2128211465 8295776.168291304 8702754.640372608 7848062.167638048 8113993.9021079475 7268831.897396977 1.1241939705262152 1.1475550300720188 1.136062321519485 1.0969483706427312 1.0940996194545527 1.1412805090818077 1.1972700377744503 1.079686843555771 1.1162720525994871 1.0 22.793292110741035 0.5448418023085265 1.1684885663420692 1.0002342907855932 1.1293808049486938 0.6016791438943779 0.031083016085954495 1.139587630306783 2.1664498273032247 0.030261794701080307 0.009255757246266833 3.5062413106353185 -0.5448418023085265 0.12914651416310052 HSNLVQLLGVIVEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSNLVQLLGVIVEEK 15 0 P41240 P41240 CSK Tyrosine-protein kinase CSK 0 113.59 0.00067329 54904000.0 132060.0 124300.0 102320.0 108850.0 109230.0 138480.0 144270.0 115960.0 170860.0 136450.0 False True 131349.00363324516 128437.25035906342 116725.76661861686 122630.39883935798 123139.79304306682 128907.20354685621 137291.10893507957 124613.52403294882 128753.84240670185 127741.64417927776 1.0282394944666962 1.0054454143302667 0.9137643982004743 0.9599876346295774 0.9639753256208874 1.009124349189859 1.0747560814420056 0.9755121349311989 1.0079237920720945 1.0 16.96286939929539 2.6927285665408727 6.763647008791307 1.0142410444692371 0.971870170366468 0.2226769887802703 0.036481112280286415 0.36522264056916126 43.70409846699395 0.012420117129505172 0.01178523251534953 492.8656673023192 -2.6927285665408727 -0.042370874102769185 HSNSNSVDDTIVALNMR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSNSNSVDDTIVALNMR 17 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 79.393 0.013637 271550000.0 96185.0 90078.0 107250.0 76586.0 115810.0 178110.0 122230.0 94095.0 145690.0 127320.0 False True 95667.15064715815 93076.19177669918 122349.86776628868 86281.77974746059 130557.71704035114 165797.67492584165 116317.26793605597 101116.84670472845 109786.65164598162 119194.32859586379 0.8026149547058059 0.7808776883359957 1.0264739036462376 0.7238748752887786 1.0953349759032216 1.3909862732478622 0.9758624366301631 0.8483360567227303 0.9210727803855542 1.0 16.862956066769804 3.228079901329176 24.999743669032117 1.0304726273066478 0.8434911221415469 0.2974898779412162 0.15382205522271555 325.40694839523724 776194.8771222126 0.049514638236631985 0.05977757743640062 1690.751966916898 -3.228079901329176 -0.18698150516510093 HSPAPPPDPGFPAPS(ph)PPPADSPSEGFSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPAPPPDPGFPAPSPPPADSPSEGFSLK 29 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 HSPAPPPDPGFPAPS(1)PPPADSPSEGFSLK;HSPAPPPDPGFPAPS(1)PPPADSPSEGFSLK 133.94 5.5661e-06 401918000.0 298230.0 283470.0 275190.0 273556.0 256550.0 319210.0 311370.0 253940.0 365870.0 290910.0 True False 296624.36281646823 292905.12758876634 313934.3600056402 308188.16155167174 289220.12180901563 297143.764039515 296307.8435510901 272890.29228119215 275706.24090682453 272343.87473941856 1.089153788019949 1.0754973941272628 1.1527131289661492 1.131614073738759 1.0619666848969687 1.091060940231629 1.0879915835617766 1.00200635150064 1.0123460319077238 1.0 18.055069894460996 1.7837994252782918 3.6843803938261934 1.004164293898604 1.1005818172835016 0.7500224870755036 0.024854396045143494 0.11510378893738617 2.9774121189056975 0.014161382563594047 0.007258890090427487 60.78542048347793 -1.7837994252782918 0.09641752338489762 HSPEEDFRQS(ph)PQEHFR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSPEEDFRQSPQEHFR 16 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 HSPEEDFRQS(1)PQEHFR;HSPEEDFRQS(1)PQEHFR;HSPEEDFRQS(1)PQEHFR;HSPEEDFRQS(1)PQEHFR 281.93 9.152299999999999e-36 3404810000.0 1308130.0 1270590.0 1295260.0 1429920.0 1309610.0 1432270.0 1349050.0 1101090.0 1622270.0 1315110.0 True False 1301087.1734269063 1312880.820062127 1477621.349398255 1610947.725387 1476381.070833385 1333260.5461009226 1283791.2976285403 1183258.927021727 1222483.2958042864 1231178.5538776843 1.0567818691521549 1.0663610212565153 1.2001682004160825 1.3084598658035471 1.1991608091153132 1.0829140435412263 1.0427336421554358 0.9610782475823421 0.9929374516425651 1.0 20.23160857575548 2.320632403454065 2.1674599307104034 0.9856057915577371 1.168832459279134 0.5675310608666844 0.06892672092867899 0.24785610451469473 2.38638016809329 0.03416291435999852 0.02478462980440447 209.2340702244892 -2.320632403454065 0.18322666772139684 HSPES(ph)PSIAVVESELVAEYITTER ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPESPSIAVVESELVAEYITTER 24 0 Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-7 EMSY Protein EMSY 1 HS(0.024)PES(0.945)PS(0.031)IAVVESELVAEYITTER;HS(0.111)PES(0.444)PS(0.444)IAVVESELVAEYITTER 208.44 4.1188e-25 205607000.0 53668.0 53781.0 59364.0 59541.0 59715.0 69905.0 60949.0 50582.0 69147.0 54165.0 True False 53379.05745107536 55571.06807369894 67721.93519886215 67078.88449512384 67319.35129146506 65072.6318886697 58000.66402220956 54356.685690191625 52106.648372329546 50708.143327010424 1.0526722918415794 1.095900272177747 1.3355238578177064 1.322842448845752 1.3275846220069831 1.2832777463182687 1.1438136010654263 1.0719518034736988 1.0275794961827007 1.0 15.62992983080368 1.8218518953992442 2.070746117921837 1.0230557923464005 1.2415774448934895 0.49564196367666535 0.09177902451329498 0.28872756406100414 2.370215976162449 0.06585235662516319 0.02971526243376402 66.35167570441192 -1.8218518953992442 0.218521652547089 HSPES(ph)PSIAVVESELVAEYITTVSHR ddPTM_BT-474_Trastuzumab_2h_R1 5 HSPESPSIAVVESELVAEYITTVSHR 26 0 Q7Z589-4;E9PMC9 Q7Z589-4 EMSY;C11orf30 Protein EMSY 1 HS(0.005)PES(0.99)PS(0.004)IAVVESELVAEYITTVSHR;HS(0.165)PES(0.834)PS(0.001)IAVVESELVAEYITTVSHR;HS(0.113)PES(0.661)PS(0.113)IAVVES(0.113)ELVAEYITTVSHR;HS(0.001)PES(0.997)PS(0.002)IAVVESELVAEYITTVSHR;HS(0.034)PES(0.965)PS(0.001)IAVVESELVAEYITTVSHR 210.68 2.2697e-25 126460000.0 40518.7 41466.9 41766.799999999996 38947.299999999996 42266.200000000004 45800.700000000004 44190.4 37957.1 45411.1 38809.3 True False 40300.551821250774 42847.10069922963 47647.20239646641 43878.024186643335 47648.550038605434 42634.60541225087 42052.74152827857 40789.6515442484 34220.14288256457 36332.457247686616 1.1092162455875956 1.1793064368625334 1.3114225132543227 1.2076811619846375 1.311459605216747 1.1734578017005863 1.1574428132288295 1.1226780304501862 0.9418615055204794 1.0 15.148971321387867 1.512997154464864 1.6368540280689443 0.9676706283706716 1.219228399533352 0.6877186043466749 0.06251022027954464 0.19686233232393432 1.0223360826186387 0.05430740436955881 0.018096749581125563 32.58345660986598 -1.512997154464864 0.2515577711626803 HSPESPS(ph)IAVVESELVAEYITTER ddPTM_BT-474_Trastuzumab_2h_R1 1 HSPESPSIAVVESELVAEYITTER 24 0 Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-7 EMSY Protein EMSY 1 HS(0.263)PES(0.328)PS(0.409)IAVVESELVAEYITTER 143.95 1.5234000000000005e-07 32944000.0 12532.0 15830.0 12981.0 14184.0 14028.0 15844.0 16070.0 14096.0 16199.0 14267.0 True False 12464.529104436093 16356.89198056293 14808.611967125331 15979.692945681725 15814.382649529804 14748.741572764227 15292.63270663846 15147.915098037665 12206.97350547914 13356.467845406767 0.933220462827872 1.224642036344062 1.1087221665582754 1.1964011092331626 1.184024311859389 1.1042396645185095 1.1449608447114656 1.1341258237855878 0.9139372509833927 1.0 13.705250913135519 1.2473477567142053 24.997404148013366 0.9569686203425481 1.1352396637158102 0.437163536768578 0.07771005945809184 133.97512029855903 381136.2846424962 0.04919404935565958 0.017359088305285108 17.674525231256222 -1.2473477567142053 0.17827104337326205 HSPTSEPTPPGDALPPVS(ph)SPHTHR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPTSEPTPPGDALPPVSSPHTHR 24 0 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4;Q9H6S3-2;A0A087WX39 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 HSPTSEPTPPGDALPPVS(0.384)S(0.384)PHT(0.231)HR;HSPTSEPTPPGDALPPVS(0.429)S(0.429)PHT(0.142)HR 161.49 3.2131e-11 2249900000.0 487090.0 586020.0 578410.0 662170.0 645420.0 648510.0 553000.0 113399.0 554750.0 393946.0 True False 484467.56156078615 605525.3214434296 659845.1003701531 746000.654106181 727610.4112959462 603680.0301283355 526249.2773348521 121861.40920845422 418039.29576915543 368804.0290058611 1.3136178660160107 1.6418620020927333 1.7891482968578598 2.0227562483985917 1.9728917096086902 1.636858555356893 1.4269076147389077 0.3304232048032143 1.1334998071903164 1.0 18.49249489103656 1.9493745664333373 5.0919778232986 0.7649955916884622 1.7392356058347296 0.6935823138634211 0.2688047420958654 0.10797799963931913 6.152596718152967 0.12214453632794267 0.07451044406778977 88.99683589255658 -1.9493745664333373 0.9742400141462674 HSPTSEPTPPGDALPPVSSPHT(ph)HR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSPTSEPTPPGDALPPVSSPHTHR 24 0 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4;Q9H6S3-2;A0A087WX39 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 HSPTSEPTPPGDALPPVS(0.212)S(0.212)PHT(0.575)HR;HSPTSEPTPPGDALPPVS(0.26)S(0.26)PHT(0.48)HR 121.26 0.00023983 701740000.0 136368.0 161438.0 156096.0 186132.0 176585.0 172818.0 165973.0 52721.0 162468.0 107544.0 True False 135633.80983990926 166811.36623866836 178072.9599892456 209696.292115456 199072.05304870426 160871.4984298137 157944.25191156854 56655.30873181352 122429.9383596633 100680.44984694927 1.3471712735302117 1.6568396991893548 1.7686945207331273 2.082790575868787 1.9772662254819708 1.5978424676723701 1.568767840744351 0.5627240325002406 1.2160249437281698 1.0 16.619424042120183 1.8970198860458773 5.302195170819405 0.9014413846442662 1.7496309483529315 0.6939031943236371 0.241546517573905 0.12258454837122049 5.005054843978712 0.11314029954382522 0.06736527584303201 78.88962398082309 -1.8970198860458773 0.8481895637086654 HSQAVEELAEQLEQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSQAVEELAEQLEQTK 16 0 P35579 P35579 MYH9 Myosin-9 0 ; 189.59 9.9248e-10 962260000.0 865534.0 709106.0 596029.0 588955.0 620438.0 848535.0 801781.0 743023.0 975418.0 721338.0 False True 860874.0611138676 732708.1645463717 679944.70242306 663516.6426130827 699447.1016758614 789877.7726865379 762995.7899291416 798471.1492543444 735039.3038315603 675301.5912714673 1.2747993966562434 1.0850087931331813 1.006875611151531 0.9825486141144792 1.035755151056186 1.1696666835914677 1.1298593099604022 1.1823919261777123 1.0884607904560362 1.0 19.365172431500977 2.7418411314154785 24.919624514635803 1.1312169389749953 1.0682997630081301 0.019909829895652598 0.08845999632448587 685.9735509575613 5210847.599690429 0.028098912569264053 0.02871697119825384 551.8755216308323 -2.7418411314154785 -0.06291717596686519 HSQAVEELAEQLEQTKR ddPTM_BT-474_Trastuzumab_2h_R1 6 HSQAVEELAEQLEQTKR 17 1 P35579 P35579 MYH9 Myosin-9 0 ;;;;; 241.74 1.4593000000000002e-20 4714780000.0 4186500.0 3681170.0 3453610.0 3456640.0 3499000.0 4656610.0 4691810.0 3884230.0 5743620.0 4641140.0 False True 4163960.3491638806 3803695.5181357414 3939848.2686837506 3894250.2695827154 3944576.909802164 4334709.511180864 4464849.22584526 4174090.966320295 4328181.811564916 4344938.471720136 0.9583473681539598 0.8754313882446949 0.9067673326853781 0.89627282294771 0.9078556429455097 0.9976457755142336 1.0275978025708732 0.9606789586292569 0.9961434068021253 1.0 22.050904316634796 2.7408886458145334 23.03467619297645 0.993849558212811 0.9062497224982354 0.7586869615490841 0.024623268885104608 32.866730086976446 325199.5167700111 0.007528614939794761 0.00763770279772567 550.6664860460294 -2.7408886458145334 -0.08759983571457552 HSQDLAFLSMLNDIAAVPATAMPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSQDLAFLSMLNDIAAVPATAMPFR 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 216.8 1.2080999999999996e-33 2366190000.0 1007720.0 1117470.0 1096520.0 1203200.0 990980.0 1321550.0 1280320.0 1100160.0 1382300.0 1229830.0 False True 1002294.5474882178 1154664.31342512 1250900.4848773016 1355524.9966331255 1117175.429001359 1230194.359094077 1218386.0303026352 1182259.5256992842 1041650.6868710298 1151341.196489564 0.8705451959368874 1.0028863007296953 1.08647244508517 1.1773443013818297 0.9703252453813204 1.0684880927086915 1.0582319420320325 1.026854184757733 0.9047280598027934 1.0 20.134884004478913 1.3618125066179407 7.0946203653844035 0.9533098511801019 1.0388473978432913 0.14117327441635097 0.07847373015323034 0.3966219924534621 22.262824100758564 0.05375152020157282 0.019528510193234955 23.00448454617223 -1.3618125066179407 0.08553754666318936 HSQEELLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSQEELLQR 9 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ; 178.95 5.0368e-05 840880000.0 325800.0 411960.0 429670.0 401840.0 368560.0 366920.0 359220.0 375580.0 458630.0 422920.0 False True 324045.928999783 425671.83956492075 490163.8012414095 452712.90279841673 415493.93137373164 341555.68403677444 341843.1562463388 403607.6867565961 345606.78182714316 395928.88351997174 0.8184447826056046 1.0751219657947706 1.2380097074091951 1.1434197444086713 1.0494155608952258 0.8626692778768827 0.8633953481928662 1.0193944002477329 0.8729011603158521 1.0 18.59488179209794 2.8863237282331804 5.643303463331475 0.9283426962457363 1.0829627927875987 0.285489581571984 0.11085471971763552 0.3005255089081666 12.959950376483807 0.035402965985893264 0.03776645257988516 769.703972927984 -2.8863237282331804 0.15462009654186237 HSQFIGYPITLFVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSQFIGYPITLFVEK 15 0 P07900;P07900-2;G3V2J8;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ; 161.19 1.6662e-06 3401000000.0 3090200.0 3482300.0 3771700.0 2688800.0 2117130.0 2965600.0 3645200.0 2759800.0 5945900.0 3004900.0 False True 3073562.7065534955 3598206.250405201 4302722.575795904 3029201.804311123 2386733.9562873566 2760595.052271498 3468867.7499837275 2965750.289980446 4480612.615978043 2813124.7093756814 1.0925796130935175 1.2790781149562878 1.5295171811813526 1.076810350502874 0.8484280658915566 0.9813269362253615 1.233101304902183 1.0542548220831052 1.5927529273924113 1.0 21.423742079889976 HSQFLGYPITLYLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSQFLGYPITLYLEK 15 0 Q58FF8 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 0 ; 209.67 2.2681e-09 4766100000.0 2789800.0 2843790.0 3485600.0 2071340.0 1357800.0 2143660.0 2959900.0 1862230.0 5295800.0 2326900.0 False True 2774780.0267759208 2938443.831042644 3976342.182621684 2333571.431620722 1530707.7816888783 1995473.8298328589 2816718.3290839596 2001199.0588123326 3990721.05008435 2178395.2498406814 1.273772529103181 1.348902973993149 1.8253538621664258 1.071234171939821 0.702676790082437 0.9160292788826083 1.2930244542582263 0.9186574653790178 1.831954531839993 1.0 21.054834310913837 3.6867377458729953 24.0202739182324 1.0790619127945216 1.4692993561297762 0.2289572749290789 0.31502622374567113 297.25359820935876 137778.8625306677 0.08281464153229896 0.12829612624925543 4861.135713140461 -3.6867377458729953 0.3902374433352547 HSQTDLVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSQTDLVSR 9 0 E9PN66;E9PNB3;E9PKN9;E9PS55;E9PMY0;E9PMW4;E9PQ46;E9PIN5;E9PIK4;U3KQ32;E9PKZ4;E9PPM1;O14683 E9PN66 TP53I11 Tumor protein p53-inducible protein 11 0 106.29 0.0037081 0.0 134020.0 122240.0 113630.0 121390.0 127310.0 101180.0 122640.0 116010.0 177360.0 143310.0 False True 133298.45121102175 126308.68450435958 129628.11631033452 136757.96155360277 143522.173874511 94185.66475210084 116707.43466970394 124667.25528684382 133652.00450223952 134163.83310613612 0.9935498123817782 0.9414510720220525 0.9661927011863665 1.0193355272237523 1.0697530813760483 0.7020197811252992 0.8698874500505472 0.9292165585953435 0.9961850478474948 1.0 17.033636287326306 HSS(ph)EEDKDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSEEDKDKK 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 HS(0.199)S(0.801)EEDKDKK 93.766 0.0044676 210190000.0 380780.0 150780.0 99829.0 90282.0 94222.0 143010.0 201440.0 180630.0 471020.0 177560.0 True False 378729.9227886356 155798.6211515651 113884.05547077699 101711.69194317803 106220.613202452 133124.05530932927 191695.57762447133 194109.527820555 354943.4323446375 166227.9687832361 2.2783766508180423 0.9372587675346558 0.6851076645187405 0.6118807363627939 0.63900566180271 0.8008523251759464 1.1532089276410842 1.1677308532457429 2.1352810537406577 1.0 17.34280361845898 1.4919809050315052 4.06988639619262 1.5940797759866991 0.9685658635559491 0.13626693095992837 0.5257307117292822 0.31750880313553936 10.993151954019865 0.34332948345286907 0.13467323045389853 31.044230905057116 -1.4919809050315052 -0.62551391243075 HSS(ph)ETFSSTPSATR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSSETFSSTPSATR 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 HS(0.029)S(0.97)ET(0.001)FSSTPSATR;HSS(1)ETFSSTPSATR 247.73 1.5264e-12 198290000.0 299010.0 266940.0 234674.0 278431.0 259273.0 325220.0 256061.0 274017.0 435610.0 333220.0 True False 297400.1633831341 275824.9365313626 267714.0593770256 313680.33605182637 292289.8797185302 302738.30688553315 243674.35118198852 294465.5399701323 328259.75237494725 311953.61431600555 0.9533473879929824 0.8841857374729917 0.8581854708239867 1.0055351874656329 0.9369658382045345 0.970459366368689 0.7811236671076012 0.9439401451263263 1.0522710342519825 1.0 18.25097199912896 1.3664012695239613 5.855982482157217 1.0234446802700363 0.9121532668095133 0.3495109209513949 0.06071041385632145 0.2238562841423895 9.97388053905771 0.04196106300718791 0.015060719671955892 23.24883897561978 -1.3664012695239613 -0.11129141346052307 HSS(ph)IS(ph)PSTLTLK ddPTM_BT-474_Trastuzumab_2h_R1 3 HSSISPSTLTLK 12 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 HS(0.084)S(0.916)IS(0.782)PS(0.192)T(0.026)LT(0.001)LK;HS(0.01)S(0.99)IS(0.861)PS(0.092)T(0.047)LTLK;HS(0.024)S(0.976)IS(0.565)PS(0.175)T(0.23)LT(0.03)LK 173.68 4.7404e-05 682840000.0 2155180.0 2227780.0 1710100.0 1755840.0 1995850.0 2479660.0 2340320.0 2011390.0 3072540.0 2155520.0 True False 2143576.7503430103 2301930.310578553 1950867.2155443346 1978129.163969669 2250009.6671702345 2308246.9406917826 2227109.7807094054 2161490.1354314657 2315353.686926655 2017952.8681664835 1.0622531299706068 1.1407255079600012 0.9667555899444257 0.9802652951785745 1.1149961441936938 1.1438557248312053 1.1036480662370287 1.0711301386317316 1.147377485099734 1.0 20.94446104820028 3.2052052274235465 24.999290592584753 1.1009171044726533 1.0398198832371792 0.1928750976766327 0.05903375677810494 309.0603483774034 231634.40369887723 0.017377710532641456 0.02077144987412169 1604.0031891170142 -3.2052052274235465 -0.06109722123547412 HSS(ph)IS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSISPVR 8 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 HS(0.036)S(0.965)IS(0.999)PVR 82.914 0.027837 203480000.0 498510.0 459900.0 332960.0 404130.0 393240.0 423890.0 386820.0 363510.0 438460.0 369160.0 True False 495826.077549668 475207.49348457874 379837.8738597989 455292.81656361785 443316.7830839104 394587.4820297297 368108.0388041001 390636.96206637786 330407.4080629903 345599.8927462229 1.4346823825948278 1.3750221092618446 1.0990682631337425 1.3173986049178072 1.282745719511672 1.1417465407591396 1.065127757647787 1.1303156345399277 0.9560402505842541 1.0 18.398743244211005 7.609832085628703 0.167258169301921 0.9292693861091457 2.7107500868004726 0.7108245888749432 0.08305879691676081 29.10363670550161 0.34823148198859105 0.22608317309857234 12.605353385010288 40722279.99087603 -7.609832085628703 1.781480700691327 HSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_BT-474_Trastuzumab_2h_R1 11 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 HS(0.184)S(0.822)IS(0.994)PVRLPLNSSLGAELSR;HS(0.513)S(0.585)IS(0.902)PVRLPLNSSLGAELSR;HS(0.119)S(0.881)IS(1)PVRLPLNSSLGAELSR;HS(0.469)S(0.56)IS(0.97)PVRLPLNSSLGAELSR;HS(0.447)S(0.593)IS(0.96)PVRLPLNSSLGAELSR;HS(0.532)S(0.588)IS(0.877)PVRLPLNS(0.002)SLGAELSR;HS(0.457)S(0.573)IS(0.97)PVRLPLNSSLGAELSR;HS(0.255)S(0.748)IS(0.996)PVRLPLNSSLGAELSR;HS(0.549)S(0.632)IS(0.818)PVRLPLNSSLGAELSR;HS(0.477)S(0.529)IS(0.993)PVRLPLNSSLGAELSR;HS(0.03)S(0.97)IS(1)PVRLPLNSSLGAELSR 237.38 9.817199999999999e-30 8505028000.0 2149862.0 2440403.0 1784127.5 2373495.0 2476088.0 2506133.0 2273726.0 2086600.6 2842653.0 2304871.0 True False 2138287.381864125 2521630.338600237 2035317.1440857723 2673979.2236400754 2791403.129876603 2332889.9245125214 2163737.1869031913 2242313.3323151562 2142119.257748673 2157772.159480657 0.9909699559654983 1.1686267836578053 0.9432493301682242 1.239231497121393 1.2936505448974054 1.0811567450541268 1.0027644380322203 1.0391798422567686 0.9927458042021678 1.0 21.041111107115437 2.4595440756060114 8.128705705839373 1.0175838827314703 1.1315634220004291 0.2427691907055417 0.09802481071408174 0.273100183792394 95.19381609353577 0.034789018939840564 0.029513331888376224 288.1005421936872 -2.4595440756060114 0.11397953926895887 HSS(ph)ISPST(ph)LTLK ddPTM_BT-474_Trastuzumab_2h_R1 3 HSSISPSTLTLK 12 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 HS(0.037)S(0.963)IS(0.172)PS(0.342)T(0.479)LT(0.008)LK;HS(0.009)S(0.991)IS(0.224)PS(0.342)T(0.434)LTLK;HS(0.01)S(0.99)IS(0.184)PS(0.318)T(0.496)LT(0.002)LK 196.74 1.0771e-06 915310000.0 2789270.0 2872010.0 2084490.0 2375220.0 2498390.0 3221290.0 3017360.0 2596830.0 3786730.0 2664340.0 True False 2774252.88023703 2967603.116683293 2377968.0732881194 2675922.608463204 2816545.157382292 2998609.8044010173 2871398.7693654425 2790618.6410355545 2853541.13108235 2494299.5401437655 1.1122372576299029 1.1897541048787779 0.9533610679137033 1.072815259513286 1.1291928303125747 1.2021851249782873 1.151184419975454 1.1187985228408894 1.144025039958865 1.0 21.250203297976437 HSS(ph)LELGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSLELGR 8 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 HS(0.015)S(0.985)LELGR 135.86 0.00052545 228710000.0 70705.0 70372.0 56235.0 70925.0 53529.0 63298.0 51258.0 45888.0 82301.0 75996.0 True False 70324.33213606392 72714.28947922766 64152.3991966176 79904.09772789586 60345.60085875974 58922.35824746467 48778.45471542465 49312.395574542534 62019.02132689912 71145.87021655093 0.9884527650306836 1.022045120228382 0.9017023616599688 1.1231024019340403 0.8481954142254812 0.828190843236848 0.6856118923973346 0.6931167673464033 0.8717163925063833 1.0 16.11849239503599 3.0550798417501044 5.923078490943017 0.7830056771879382 1.0020579181897202 0.443377047641352 0.10002822725749612 0.15594048307280695 11.579714382819704 0.02888533490269776 0.03449752751330018 1135.219497993212 -3.0550798417501044 0.219052241001782 HSS(ph)NPPLESHVGWVMDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 HS(0.029)S(0.971)NPPLESHVGWVMDSR;HS(0.127)S(0.873)NPPLESHVGWVMDSR;HS(0.481)S(0.519)NPPLESHVGWVMDSR 266.74 2.2598e-31 2159460000.0 568140.0 557470.0 465280.0 593780.0 544260.0 560820.0 569390.0 504300.0 720140.0 579060.0 True False 565081.1973662876 576025.051952268 530787.3797137416 668952.487118365 613568.2849182412 522051.83342827845 541846.4304189717 541933.4267835126 542671.1463816123 542103.895041792 1.0423854219360005 1.0625731658095927 0.9791248219546957 1.2339931390214307 1.1318278480012396 0.9630106667800872 0.999525064060275 0.9996855431959841 1.0010463886074394 1.0 19.048209847228936 2.734675830466645 24.994441623562107 0.9937946900020419 1.0903002402886008 0.37832246639749767 0.062372331957362866 394.67721553685413 2539318.1646817476 0.020920955430322016 0.020408381438902473 542.844985568832 -2.734675830466645 0.09650555028655894 HSS(ph)PHQS(ph)EDEEDPR ddPTM_BT-474_Trastuzumab_2h_R1 5 HSSPHQSEDEEDPR 14 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 2 HS(0.185)S(0.816)PHQS(1)EDEEDPR;HS(0.464)S(0.537)PHQS(1)EDEEDPR;HS(0.456)S(0.546)PHQS(0.998)EDEEDPR;HS(0.077)S(0.923)PHQS(1)EDEEDPR;HS(0.076)S(0.924)PHQS(1)EDEEDPR 177.64 3.0316000000000008e-06 1266916000.0 1296653.0 1439283.0 960327.0 1313564.0 1189413.0 1497417.0 1424590.0 1027505.0 1424569.0 1244232.0 True False 1289671.964319691 1487188.6645900547 1095532.6942880815 1479861.0677172476 1340877.6953468202 1393904.0873304661 1355677.1392377163 1104182.6406646688 1073503.0581966108 1164824.0485193918 1.1071817807667979 1.276749622812493 0.9405134583893708 1.2704588899914107 1.151141837302561 1.196664929009886 1.1638471415154228 0.9479394266182911 0.9216010431456501 1.0 20.15168061562033 1.7271380519398019 5.4185226262668325 0.9507242463548685 1.1601825879892853 0.5096453227305747 0.09041453138260198 0.11610485355456018 8.447959638606548 0.043480723817684475 0.02216299326501269 53.350445697983645 -1.7271380519398019 0.2094583416344168 HSS(ph)PHQSEDEEDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSPHQSEDEEDPR 14 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 1 HS(0.211)S(0.395)PHQS(0.395)EDEEDPR 135.58 5.359e-05 71604000.0 29408.0 50571.0 45966.0 40842.0 46009.0 49047.0 47870.0 25364.0 43220.0 37783.0 True False 29249.670595535972 52254.225164184965 52437.61325636568 46012.59301237542 51867.97343329181 45656.49633421912 45554.34521884151 27256.7904757823 32569.0101183288 35371.65659234627 0.826923967193129 1.4772908650111614 1.4824754707053258 1.3008322890461297 1.4663710560990524 1.2907650003618514 1.287877063374481 0.7705828084308648 0.9207657558616039 1.0 15.110306167194341 1.7811471438076742 7.795452392951999 0.8839854680835588 1.3244551203281705 0.49930859759015167 0.1861687556303768 0.1648409363052197 24.385844819160667 0.0828987054524261 0.04721059347106299 60.415328856728785 -1.7811471438076742 0.44046965224461165 HSS(ph)TGDSADAGPPAAGSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 HS(0.01)S(0.971)T(0.019)GDSADAGPPAAGSAR 177.44 5.3729999999999995e-15 0.0 106350.0 117340.0 84395.0 101310.0 107960.0 116150.0 109760.0 86238.0 119360.0 101830.0 True False 105777.42341659583 121245.59096647204 96277.08242550967 114135.83561245163 121708.06607094665 108120.82388769026 104450.489476082 92673.51746769092 89945.32734205741 95331.1222189508 1.1095791275136004 1.2718363965967214 1.0099228896559744 1.1972568134707497 1.2766876465737482 1.1341608214719727 1.095659917190384 0.9721223805049095 0.9435043378119098 1.0 16.54065965917301 1.924830891026477 2.168030221694573 0.9642872791035942 1.1713154556881646 0.5815362018532295 0.07387805847337287 0.21453016708009318 1.8547433383826235 0.042901214320332046 0.021373499510957624 84.1067576419866 -1.924830891026477 0.2070281765845704 HSS(ph)YPAGTEDDEGMGEEPSPFR ddPTM_BT-474_Trastuzumab_2h_R1 6 HSSYPAGTEDDEGMGEEPSPFR 22 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 1 HS(0.397)S(0.603)YPAGTEDDEGMGEEPSPFR;HS(0.147)S(0.853)YPAGTEDDEGMGEEPSPFR;HS(0.16)S(0.84)YPAGTEDDEGMGEEPSPFR;HS(0.493)S(0.501)Y(0.005)PAGTEDDEGMGEEPSPFR;HS(0.016)S(0.984)YPAGTEDDEGMGEEPSPFR;HS(0.141)S(0.859)YPAGTEDDEGMGEEPSPFR 336.79 1.8555999999999996e-80 9887940000.0 2127540.0 2171650.0 1878140.0 2077440.0 2137210.0 2208420.0 2212680.0 1819230.0 2648930.0 2086540.0 True False 2116085.561031917 2243932.057459854 2142565.7869144725 2340443.690995278 2409371.025263871 2055757.1234615012 2105644.2151415576 1954990.180462761 1996136.6953434665 1953375.2308232333 1.0832970172044778 1.1487460381660353 1.0968531560684869 1.1981536645209316 1.2334399388531523 1.0524128139963769 1.0779517329367139 1.0008267482939504 1.0218910651908961 1.0 20.89753767761197 2.565748493649379 6.52204684942815 1.0292246758767547 1.1513856549672916 0.6441035181022017 0.045451263731684705 0.16615069531567056 10.231208805417655 0.015593138115283263 0.014627359255170407 367.91584643376973 -2.565748493649379 0.12216097909053691 HSSAPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSAPPK 7 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 64.803 0.072306 25354000.0 23244.0 42643.0 50932.0 46773.0 46677.0 38385.0 58503.0 56704.0 48004.0 53832.0 False True 23118.856886651192 44062.346476762155 58102.782891119925 52694.45700425627 52621.03927374557 35731.53529857076 55672.98638683699 60935.54041707769 36174.05742064451 50396.39567210605 0.4587402844653684 0.8743154324655457 1.1529154439764684 1.045599716041244 1.0441429108564373 0.7090097381378374 1.1047017479000285 1.2091249702368092 0.7177905669287084 1.0 15.62103293605395 4.684268892455125 3.198351263939095 1.0144600453097345 0.40976764140011224 0.5068600926340744 0.15834582808162037 0.22823690390878207 3.7778711428706644 0.038986986820944126 0.31728193833748813 48335.797942236495 -4.684268892455125 -0.6046924039096223 HSSDINHLVT(ph)QGRESPEGSYTDDANQEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSSDINHLVTQGRESPEGSYTDDANQEVR 29 1 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 1 HSSDINHLVT(0.921)QGRES(0.079)PEGSYTDDANQEVR 201.7 4.5687e-25 99765000.0 44450.0 55971.0 53879.0 62687.0 53699.0 60819.0 60158.0 30761.0 64978.0 54808.0 True False 44210.68613885926 57833.960899816 61464.69487533669 70623.16777255696 60537.249351090766 56614.725682526376 57247.92771412303 33056.542021193 48965.04256059157 51310.106516510445 0.8616369978618783 1.1271456020307875 1.1979062030510252 1.376398775353 1.1798309039099584 1.1033835149866436 1.1157242032951524 0.6442501149467726 0.9542962563298464 1.0 15.64695540002483 1.872577741472148 7.58678475722809 0.8345946420515432 1.151379478813156 0.40910395255283194 0.1478210293089312 0.2281804072021955 13.002457778097861 0.06438658474732312 0.04002977877614277 74.57233492992889 -1.872577741472148 0.31678483676161273 HSSDINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_BT-474_Trastuzumab_2h_R1 5 HSSDINHLVTQGRESPEGSYTDDANQEVR 29 1 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 1 HSSDINHLVT(0.055)QGRES(0.944)PEGSYTDDANQEVR;HSSDINHLVT(0.004)QGRES(0.996)PEGSYTDDANQEVR;HSSDINHLVTQGRES(1)PEGSYTDDANQEVR;HSSDINHLVTQGRES(1)PEGSYTDDANQEVR;HSSDINHLVT(0.001)QGRES(0.999)PEGSYTDDANQEVR 411.04 4.6223999999999976e-175 6121240000.0 226794.0 545195.0 662488.0 821039.0 681820.0 683919.0 649975.0 344975.0 401173.0 487378.0 True False 225572.96630318224 563341.4859976633 755760.5519510772 924982.4532169747 768645.7355362434 636641.2893021557 618533.226104376 370718.78624755575 302309.28959278873 456273.11877470184 0.4943814505420502 1.23465850346496 1.6563775529459932 2.02725607789687 1.6846176202542948 1.3953074663083886 1.3556205716554492 0.812493155948135 0.6625621303411976 1.0 18.79953813467927 1.7763860847029802 3.4742385540903284 0.792698858055656 1.453177176865245 0.3251101002743305 0.3815854337852129 0.26279116483793635 6.1694777025941185 0.2218656989692504 0.11141247536922957 59.756628269465324 -1.7763860847029802 0.6604783188095891 HSSGILPTFQTNLTFTVPIS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSSGILPTFQTNLTFTVPISPGR 23 0 I3L2J0 I3L2J0 CIC 1 HSSGILPTFQTNLTFTVPIS(1)PGR;HSSGILPTFQTNLTFTVPIS(1)PGR 182.44 2.541e-17 490040000.0 238280.0 405350.0 703260.0 443740.0 634470.0 723760.0 1058530.0 697390.0 465810.0 1001690.0 True False 236997.1269553967 418841.82971075014 802272.8951544992 499917.4385023126 715265.9937016813 673728.1747477814 1007324.8599227144 749432.7830746652 351017.3670342138 937761.2866100452 0.25272649909885714 0.4466401371982842 0.8555193167065693 0.5330966906402015 0.7627378138921984 0.7184431521835063 1.0741804703456437 0.7991722347419811 0.37431420132848736 1.0 19.838861196267413 4.405782768041793 3.6946011653959228 0.7656546690436761 0.282584180532203 0.43796529723182354 0.19305438741273526 0.1936656703071791 5.087342605508282 0.04743180227878196 0.16289761109744838 25455.56659201029 -4.405782768041793 -0.48307048851147305 HSSIS(ph)PVRLPLNSSLGAELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 HSS(0.002)IS(0.998)PVRLPLNSSLGAELSR;HS(0.022)S(0.016)IS(0.962)PVRLPLNSSLGAELSR 184.68 2.3357e-17 364780000.0 106862.0 185126.0 209707.0 230962.0 204333.0 209084.0 210479.0 173611.0 248416.0 202875.0 True False 106286.66686548424 191287.80699896975 239231.92279408 260201.76551893252 230353.59637342262 194630.51521079527 200297.32666213784 186566.734398795 187197.20540385865 189927.34380997386 0.559617508113135 1.00716307173946 1.2595970543000714 1.3700068684121105 1.2128511448246022 1.0247630030856802 1.0545997361103485 0.982305815772682 0.9856253536149763 1.0 17.53508809945658 -3.222781726091927 9.0992688004953 1.0033626407341074 1.0600429988885063 0.0 0.2071067922388275 0.0 0.0 0.0 0.04754440153060093 0.0005987124288776267 3.222781726091927 0.05668035815439887 HSSLAGCQIINYR ddPTM_BT-474_Trastuzumab_2h_R1 4 HSSLAGCQIINYR 13 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;; 196.7 1.3977e-07 2952630000.0 1083114.0 2041990.0 2351230.0 2798390.0 2726080.0 2421320.0 2674600.0 2285780.0 1719440.0 2279350.0 False True 1077282.6345692792 2109956.4027409763 2682262.7467424753 3152665.8870746098 3073230.1292579323 2253939.847574193 2545219.3800357943 2456356.5105556548 1295707.0513155765 2133879.931550284 0.5048468841387075 0.9887887184018236 1.256988599538394 1.47743358961353 1.4402076160982504 1.0562636698760668 1.1927659763811866 1.151122176199993 0.6072071029667696 1.0 21.025047570683192 1.2616548177896008 24.30886641160065 0.8036037730096164 1.1543990720506099 0.18865519033660416 0.27095456443998456 232.52803941930873 244759.51814349828 0.18730173290879537 0.06828904962851742 18.26647798504132 -1.2616548177896008 0.3507952990409935 HSSSPLS(ph)PGGPTHLTKPTTTSSSER ddPTM_BT-474_Trastuzumab_2h_R1 2 HSSSPLSPGGPTHLTKPTTTSSSER 25 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 HSSSPLS(1)PGGPTHLTKPTTTSSSER;HSSSPLS(1)PGGPTHLTKPTTTSSSER 257.94 3.6478999999999996e-45 1638900000.0 218633.0 436720.0 519580.0 597690.0 559180.0 578770.0 599070.0 465090.0 433040.0 458850.0 True False 217455.9042204101 451255.96119718486 592732.3477296811 673357.4927174642 630388.258480474 538760.9921780335 570090.6954303611 499797.3774791663 326323.0944387115 429565.80015875114 0.5062225720484421 1.0504932213654297 1.3798406379433135 1.5675304981649307 1.4675010399978456 1.2541989887903737 1.32713240956258 1.163494340784253 0.7596579949291002 1.0 18.712519612300607 1.3741400813123799 5.229444851208721 0.8853636733392564 1.2443996285453671 0.18316507117263192 0.28141699497681116 0.34323047763987297 13.25965927703463 0.2087099307538543 0.0742296067450701 23.66682945939446 -1.3741400813123799 0.35903595520611076 HSSVYPTQEELEAVQNMVSHTER ddPTM_BT-474_Trastuzumab_2h_R1 5 HSSVYPTQEELEAVQNMVSHTER 23 0 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;; 262.98 4.2969e-44 2407590000.0 295058.0 764612.0 886723.0 1046556.0 1054830.0 905226.0 891577.0 743918.0 586080.0 845191.0 False True 293469.44051202585 790061.6482022852 1011565.8908655179 1179049.882294195 1189156.348032758 842649.8572927978 848448.0143551092 799432.9386990616 441648.4370696473 791250.1867755807 0.3708933601746643 0.9984978978922723 1.2784400026339893 1.4901100840164534 1.502882865505135 1.0649600737873763 1.0722879166861432 1.010341548173058 0.5581653495330048 1.0 19.59377440952777 1.4909031712292944 3.6388043090027384 0.7756215874585649 1.138757227580871 0.1387758384257014 0.3159588349860929 0.3819101760064914 10.368416142723495 0.22842193570883826 0.08627878948007016 30.967287864801605 -1.4909031712292944 0.36313564012230615 HSTENDS(ph)PTNVQQ ddPTM_BT-474_Trastuzumab_2h_R1 1 HSTENDSPTNVQQ 13 0 P49354;P49354-2;B3KVN2 P49354 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 1 HSTENDS(1)PTNVQQ 233.97 1.2537e-16 401050000.0 468990.0 545070.0 338140.0 352510.0 379080.0 382820.0 374150.0 259530.0 618460.0 362950.0 True False 466465.00994968746 563212.3254482264 385747.172834432 397137.72985633544 427353.5910168068 356356.5544613486 356050.93510820024 278897.44646663684 466048.819939417 339786.22026287124 1.3728190907471551 1.6575490466108498 1.1352643215961014 1.1687870377706753 1.2577131311746255 1.0487669399472939 1.0478674939576595 0.8208026983874491 1.3715942323348613 1.0 18.374267820892076 3.9464863376997164 0.7943360147347499 1.0319461138301946 1.5729791290423203 0.430799235586947 0.16963508166601388 0.893107800846626 0.8651401906824088 0.06960488366947469 0.35400340596820606 8840.69357170825 -3.9464863376997164 0.5410330152121257 HSTIVLDTNDKESPTASKPCFPENESS(ph)PSSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSTIVLDTNDKESPTASKPCFPENESSPSSPK 32 2 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;H0Y5D8 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 HSTIVLDT(0.001)NDKES(0.004)PT(0.011)AS(0.004)KPCFPENES(0.033)S(0.432)PS(0.432)S(0.084)PK 71.244 0.0015318 195690000.0 184160.0 135920.0 165340.0 141260.0 120160.0 229330.0 195120.0 194650.0 265000.0 184780.0 True False 183168.5030220996 140444.0150346248 188618.4348389572 159143.50151628585 135461.66375588122 213476.95688475296 185681.30016921574 209175.7714126724 199694.3008180732 172987.18220188282 1.0588559261479547 0.8118752687162748 1.0903607564335727 0.919972795039572 0.7830734163748164 1.234062282346544 1.0733818413928402 1.2091980963569662 1.15438784698523 1.0 17.40030561716085 2.7277779499648793 24.999504289664365 1.147008790005198 0.9341457359601492 0.4633496730835983 0.10791772893920429 588.7900358756548 1365101.0833973954 0.03285903713481971 0.03126842162235197 534.2911123264303 -2.7277779499648793 -0.2128630540450488 HSTLDFMLGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSTLDFMLGAK 11 0 P52788;P52788-2 P52788 SMS Spermine synthase 0 ; 84.65799999999999 0.015797 1661700000.0 3455300.0 4588600.0 4811700.0 4571400.0 4164300.0 5290600.0 5577100.0 4710200.0 6504200.0 5333900.0 False True 3436697.048719923 4741328.777132728 5489145.535953859 5150138.771283803 4694598.921260125 4924873.2747327965 5307314.3664090475 5061699.041910966 4901327.061814764 4993485.9354184605 0.6882360525627321 0.9495027799122856 1.099261238931248 1.0313714382880732 0.940144616801992 0.9862595666488216 1.06284756481732 1.0136604182678626 0.9815441807996254 1.0 22.251615877054874 4.705920821109089 3.4566670509758586 1.0148642888241042 0.6585733521171955 0.8411910265151783 0.042310034678968725 0.0971067474440829 2.0158669993027822 0.010560263453049565 0.08616852978574253 50806.680534047904 -4.705920821109089 -0.3562909367069087 HSTPSNSSNPS(ph)GPPSPNS(ph)PHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 2 HSTPSNS(0.003)S(0.004)NPS(0.756)GPPS(0.401)PNS(0.836)PHR 119.69 2.7958e-05 228240000.0 46306.0 75377.0 54313.0 85536.0 65653.0 70130.0 61948.0 43489.0 59419.0 42915.0 True False 46056.693641080245 77885.87787864124 61959.79830294111 96364.84882979636 74013.5203941817 65282.07816826278 58951.33857565896 46734.37001266739 44775.98362380792 40176.127958620025 1.1463696473815743 1.9386108576431484 1.5422043250847242 2.398559884343477 1.8422263208244702 1.6248972084990616 1.4673225512517467 1.163237285106273 1.1144922594314113 1.0 15.294050908178225 1.9545964513099494 1.5135030057892194 1.0571857208044402 1.7967297478533921 0.4976119205155297 0.29792734864763065 0.32493811229520825 1.385437103580843 0.20317863887147614 0.09397093595729232 90.07337821163057 -1.9545964513099494 0.739544027048952 HSTPSNSSNPSGPPS(ph)PNS(ph)PHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 2 HSTPSNSSNPS(0.015)GPPS(0.994)PNS(0.99)PHR 67.758 0.011173 35113000.0 16300.0 21568.0 15658.0 22883.0 22432.0 21571.0 19234.0 15300.0 17695.0 15680.0 True False 16212.242611100251 22285.87784186868 17862.510298224206 25779.985453753157 25288.582235119247 20079.847542672134 18303.577938984712 16441.763691825778 13334.304350852108 14679.288975676618 1.1044296926072998 1.5181851027523252 1.216851192712545 1.7562148613921453 1.7227389062932192 1.3679032803253732 1.2468981276486546 1.1200654009243607 0.9083753561188739 1.0 13.841494469249094 1.8437380775454248 1.5955460513984916 0.9682006353526645 1.4680969412883142 0.5216568939804321 0.19099786973618876 0.30436996319394094 1.4661365982460868 0.14111664736304808 0.06043070167818745 69.78114279522919 -1.8437380775454248 0.4998963059356497 HSTPSNSSNPSGPPS(ph)PNSPHR ddPTM_BT-474_Trastuzumab_2h_R1 11 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 1 HSTPSNSSNPS(0.009)GPPS(0.984)PNS(0.006)PHR;HSTPSNSSNPSGPPS(0.999)PNS(0.001)PHR;HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPS(0.022)GPPS(0.978)PNSPHR;HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPS(0.007)GPPS(0.993)PNSPHR;HSTPSNSSNPSGPPS(0.998)PNS(0.002)PHR;HSTPSNSSNPSGPPS(0.918)PNS(0.082)PHR;HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPS(0.005)GPPS(0.846)PNS(0.148)PHR;HSTPSNSSNPSGPPS(0.99)PNS(0.01)PHR 277.38 7.6991e-45 3615221000.0 676023.9 1179175.2999999998 1246508.5 1376702.4 1386487.7 1408753.6 1336861.2 1061840.6 1142420.6 1240965.2000000002 True False 672384.2624357163 1218423.437033978 1422006.061953889 1550992.7826835215 1563048.6902385592 1311369.779481273 1272192.1164502753 1141080.5374893148 860886.3507817512 1161765.7384922407 0.5787606228673502 1.0487686085624015 1.224004129954282 1.33503057569629 1.3454078033555288 1.1287729841157055 1.0950504686954772 0.9821950326838081 0.7410154407712386 1.0 20.147887758559218 1.5971874434884623 3.0021495685252395 0.8677051755761721 1.1300488713280392 0.16483717215883675 0.21070920460290327 0.36284179675352984 7.611465231113758 0.1466526077648398 0.05896780532373424 39.553729894328534 -1.5971874434884623 0.2623436957518671 HSVDELQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HSVDELQK 8 0 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-2 A0MZ66 KIAA1598 Shootin-1 0 ; 116.25 0.0023075 369230000.0 425140.0 417500.0 351110.0 349790.0 319060.0 414560.0 425790.0 366270.0 559780.0 399030.0 False True 422851.0934774942 431396.2351159202 400543.23609717126 394073.37813522335 359690.39978321805 385902.4429692719 405192.9110242432 393602.9272813741 421829.7196677027 373563.56377322983 1.1319388036842484 1.1548134693826764 1.0722224406776442 1.0549031446076576 0.9628626415009965 1.0330301999247773 1.0846692512822633 1.0536437850247866 1.1292046670905318 1.0 18.510994220364562 4.117470004534917 3.62847636414583 1.0473635703452522 1.143773516393749 0.4489560229906352 0.0426070962733618 0.20873652811814666 5.213283082174825 0.01120729459196033 0.02744870588966115 13105.995199178507 -4.117470004534917 0.09640994604849684 HSVDLIGRPFGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSVDLIGRPFGSK 13 1 Q96FX7 Q96FX7 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 0 54.199 0.083598 296470000.0 680410.0 863240.0 776870.0 899100.0 854370.0 863520.0 971960.0 664970.0 1402200.0 883240.0 False True 676746.7481606575 891972.4215603995 886246.5433249103 1012925.9678131997 963168.9552522661 803826.8949074331 924942.5815522283 714593.4380492409 1056646.5985173678 826870.8670201928 0.818443090877612 1.0787324322778649 1.0718076771995737 1.2250110727246886 1.1648360024138387 0.9721311113598625 1.1186058409403854 0.8642140708432892 1.2778858714967445 1.0 19.65730251476917 4.738936470540256 22.360680062931714 1.0762324257406275 0.8184428369603017 0.3215503364722102 0.11578919532371557 8.85341122694451 525733.1703373477 0.027661070132257267 0.1621900438923499 54819.67677428586 -4.738936470540256 -0.25778958878032576 HSVEVTNCFSVPHNESEDEVAVDMEFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HSVEVTNCFSVPHNESEDEVAVDMEFAK 28 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 0 47.507 0.064265 73796000.0 27909.0 27420.0 20711.0 26169.0 25494.0 33442.0 29061.0 22659.0 45268.0 32965.0 False True 27758.741044981416 28332.65812425997 23626.92877676086 29481.99271683198 28740.509785223356 31130.233254000334 27655.208406199134 24349.92964007062 34112.30796012281 30861.145477243605 0.8994721555442639 0.9180689078813329 0.7655881987330277 0.9553110314253053 0.9312846085514239 1.0087193061889148 0.8961173663042266 0.789015743373031 1.1053480819523225 1.0 14.913503991155732 -1.2934205683526172 0.14984471381376496 1.1181063960119935 0.856338210472331 0.1399177800850412 0.08872110036691469 74.10348473693615 2.0808058508077716 3.818279807005943 0.6135130966806527 0.0508837876629129 1.2934205683526172 -0.2617681855396624 HSVGVVIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 HSVGVVIGR 9 0 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ;; 168.25 5.9366e-05 1340870000.0 851550.0 972790.0 811290.0 955980.0 901950.0 941380.0 961410.0 821450.0 1123020.0 895190.0 False True 846965.3494160983 1005168.727086026 925512.5801409079 1077006.9699811633 1016807.9862235119 876304.6163701579 914902.9253571425 882750.7702385812 846266.7686970289 838058.2077892827 1.010628309041101 1.1994020436093156 1.1043535777572318 1.2851219163191594 1.213290409631276 1.0456369357467015 1.0916937712125854 1.0533287091921613 1.0097947383981831 1.0 19.676690925011282 2.725201066210313 23.99604275688992 1.0484569241891812 1.1681814596139621 0.4188276584952134 0.07164185898497127 468.502745681187 841509.2592955907 0.023090651301786662 0.02189690166865887 531.1302857994949 -2.725201066210313 0.1197245354247809 HSVTAAT(ph)PPPS(ph)PTSGESGDLLSNLLQSPSSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8;Q96QU8-2 Q96QU8 XPO6 Exportin-6 2 HS(0.011)VT(0.046)AAT(0.931)PPPS(0.643)PT(0.141)S(0.126)GES(0.099)GDLLS(0.002)NLLQSPSSAK;HSVT(0.001)AAT(0.999)PPPS(0.978)PT(0.019)S(0.004)GESGDLLSNLLQSPSSAK;HSVTAAT(1)PPPS(0.942)PT(0.031)S(0.026)GES(0.001)GDLLSNLLQSPSSAK 198.14 1.6306e-26 922900000.0 637320.0 596320.0 545110.0 560200.0 500740.0 673280.0 676630.0 551390.0 741420.0 620940.0 True False 633888.7399329084 616168.1507169482 621856.7498189424 631121.2625614007 564506.2708814916 626737.7383306425 643898.8219223891 592537.5217016868 558706.9755190037 581311.0775865195 1.0904466891714506 1.0599628571936868 1.0697486660683637 1.0856859380379993 0.9710915422861062 1.0781451833547104 1.1076665261493392 1.0193122831269223 0.9611153082419085 1.0 19.148950875569593 1.4990109590048104 5.168225966283559 0.9825453603027673 1.063657674744018 0.4845983176386395 0.035724561952188406 0.135401753907173 8.037326570507672 0.02161626624492755 0.009215683193133461 31.550842378954904 -1.4990109590048104 0.08111231444125078 HSVVAGGGGGEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HSVVAGGGGGEGR 13 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 0 113.76 0.00079672 121020000.0 38673.0 43660.0 38937.0 46321.0 51340.0 40834.0 45354.0 38208.0 43343.0 41036.0 False True 38464.78886497425 45113.19670697267 44418.99115352896 52185.2338506009 57877.844683979245 38011.24169289668 43160.053750894906 41059.274976292785 32661.69841644436 38417.047347312844 1.0012427169956555 1.1743015099292424 1.1562312624381303 1.358387420532752 1.5065667114062482 0.9894368338423449 1.123460982326478 1.0687774780058612 0.8501876294959182 1.0 15.229459020336238 1.8780131035760983 1.2854016227207503 0.9469865529786441 1.2215402125452266 0.34275831853750205 0.14758973053210178 0.5308415606811429 1.6281530633482804 0.11925941236627736 0.05087900467491955 75.51150107265774 -1.8780131035760983 0.2745536595665825 HSYDLSSAISVLVPLGGPVLCR ddPTM_BT-474_Trastuzumab_2h_R1 2 HSYDLSSAISVLVPLGGPVLCR 22 0 Q9BTC8;F6RRE2;E7EV10;E7EQY4;Q9BTC8-2;E9PCS8 Q9BTC8 MTA3 Metastasis-associated protein MTA3 0 ; 114.4 0.00022925 177550000.0 175328.0 195611.0 197125.0 168589.0 177598.0 211940.0 225530.0 196198.0 250250.0 209730.0 False True 174384.05352877188 202121.7938856536 224878.48655878453 189932.3501141802 200214.05259418295 197289.086653096 214620.25229173418 210839.29103325697 188579.2406781996 196344.85184111344 0.888151901583278 1.029422426869715 1.1453240787833905 0.9673406169461353 1.0197061482223153 1.004809063253396 1.0930780729886904 1.0738213355544088 0.960449122601911 1.0 17.583030245496047 HT(ph)GEKHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTGEKHFK 8 1 D6RGC2;D6RIY0;A0A087WTY0;Q15928;B4DXR9;Q8TF20;Q8TF20-2 D6RGC2 ZNF721;ZNF141;ZNF732 Zinc finger protein 141;Zinc finger protein 732;Zinc finger protein 721 1 HT(1)GEKHFK 73.931 0.068369 284720000.0 335600.0 436460.0 417910.0 524600.0 427770.0 419550.0 502840.0 348180.0 644610.0 533550.0 True False 333793.1668886651 450987.3072543589 476748.095461162 591014.3062115498 482243.97390856664 390547.49601446843 478515.7081646593 374162.95962221577 485754.5028314654 499498.3822048638 0.668256752735114 0.9028804162760858 0.9544537328764139 1.1832156564806484 0.9654565281670512 0.7818794012715934 0.9579925085090693 0.7490774203724185 0.9724846368616235 1.0 18.930120479804255 2.803293387831697 24.993387386119487 0.8718869919771549 0.9479633337562116 0.008164049793373374 0.1389570480328703 645.9855970092477 249413.69988216637 0.043534626502297565 0.0461754410567464 635.7602749523475 -2.803293387831697 0.07607634177905664 HT(ph)PELPLAPRPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTPELPLAPRPLK 13 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 HT(1)PELPLAPRPLK 93.237 0.0083646 183810000.0 69232.0 67795.0 53432.0 63302.0 60955.0 69922.0 79980.0 54029.0 97577.0 62766.0 True False 68859.26260439839 70051.51559205707 60954.76116073038 71316.02670949971 68717.25794140928 65088.45671868344 76111.06184672962 58060.91833370297 73530.45581481187 58760.220143323844 1.171868696823151 1.192158835028056 1.0373473927097918 1.2136786849257988 1.169452016581948 1.1076959303407 1.295282108560601 0.988099060760576 1.251364539402022 1.0 15.842552180465539 -4.229124686850022 0.36409156967160006 2.4461094285760587e-09 1.154964487567129 0.21008254679132898 0.08920071959305438 418.839746805985 5.76042533723435 322.2579685564474 0.05968470083376157 5.900316565349414e-05 4.229124686850022 1.1549644851210195 HT(ph)PS(ph)PGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 3 HT(1)PS(1)PGLPAEGAPEAPRPS(0.538)S(0.462)PPPEVLEPHSLDQPPATSPR 211.81 6.5123e-32 173680000.0 60625.0 52807.0 46128.0 52411.0 57860.0 61276.0 48551.0 48018.0 51905.0 67065.0 True False 60298.60173607073 54564.64907249439 52622.421448236426 59046.22722617914 65228.12803691153 57040.134348188636 46202.40264716891 51601.346990463375 39113.708241366425 62784.85428276482 0.9604004409169012 0.869073436513064 0.8381387844151117 0.9404533609372097 1.0389150183122653 0.9085015008762523 0.7358845246193716 0.8218757147713657 0.6229799955449382 1.0 15.938128956397684 2.3121125332877512 6.792912152610747 0.7835080983824272 0.9261727358290499 0.2855401906924303 0.10081518248713957 0.2543934050465913 19.016324667563577 0.03397820489835316 0.028234240034302235 205.16937396470024 -2.3121125332877512 0.14266463744662272 HT(ph)RISELK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTRISELK 8 1 P24593;C9JXX4 P24593 IGFBP5 Insulin-like growth factor-binding protein 5 1 HT(0.5)RIS(0.5)ELK 86.01100000000002 0.026411 186080000.0 164400.0 407910.0 410810.0 497630.0 448620.0 257660.0 284760.0 206180.0 101980.0 279450.0 True False 163514.88866655703 421487.0377631975 468648.47717546887 560629.9069768463 505749.0978209338 239848.57066639967 270985.07091116183 221566.1985608259 76848.39546198909 261615.26175081808 0.6250204501536337 1.6110949909514578 1.791365205680717 2.1429556640729626 1.9331788766308557 0.9167988482829773 1.0358152238429739 0.8469161817167307 0.2937458424546548 1.0 17.99708717968404 2.653484690087547 5.797163836560672 0.8214200787500777 1.6571507966780554 0.47713255363025264 0.41947516864639806 0.21000215168540493 11.306674738316238 0.14297784772136674 0.13473543071446187 450.28210749405133 -2.653484690087547 0.8357307179279777 HTDEEFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 HTDEEFLK 8 0 Q9H0C8;E9PC05;F8SNU7;H7C2I8 Q9H0C8 ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 0 ; 139.88 0.00065854 422010000.0 380660.0 379530.0 313700.0 309890.0 291770.0 369490.0 372640.0 348140.0 525330.0 377000.0 False True 378610.5688553021 392162.4266192697 357866.23327072 349122.0422262625 328925.1800437204 343948.025985904 354613.9795769609 374119.9746190994 395869.46056135243 352939.5372340617 1.0727349274111388 1.1111320360778856 1.013959036936661 0.9891837139082905 0.9319590052773955 0.9745239331398716 1.0047442753396845 1.0600115179813117 1.1216353476964542 1.0 18.429061528177275 -0.35481928345113545 6.797800522612173 0.9999514681549845 1.0282653976231702 0.02360262176522243 0.057461764943704995 0.0 0.0 0.0605063071070829 0.014261473353324708 0.44175422977690554 0.35481928345113545 0.028313929468185672 HTDNVIQWLNAMDEIGLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HTDNVIQWLNAMDEIGLPK 19 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 171.21 1.0720999999999998e-11 661760000.0 901510.0 862720.0 778490.0 794250.0 797280.0 1008730.0 948270.0 823700.0 1184550.0 932450.0 False True 896656.3703271762 891435.113674748 888094.6252436177 894801.9685637117 898808.8821512078 938998.8693950064 902398.557356818 885168.6766638499 892633.5246567872 872940.2426893918 1.0271680998056851 1.0211868694796065 1.0173601603101006 1.025043782844708 1.0296339178752016 1.075673709923257 1.0337460838976442 1.0140083288367874 1.0225597137173141 1.0 19.73552337167478 3.3282137309673208 4.143054655911522 1.0312676188217877 1.0218339289294296 0.024860133657022332 0.018390534332132273 0.8151179099921955 25.98005800527642 0.005551693663815296 0.007564793349680609 2129.1866327643415 -3.3282137309673208 -0.009433689892358155 HTDSWLHTSELNDGYDWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HTDSWLHTSELNDGYDWGR 19 0 Q9H089;F8WFC6 Q9H089 LSG1 Large subunit GTPase 1 homolog 0 ; 160.25 1.8409e-11 216355000.0 55615.0 131251.0 134028.0 146092.0 141211.0 126895.0 139467.0 93414.0 113522.0 117357.0 False True 55315.57501940736 135619.6101920949 152897.97740774005 164587.23222084995 159193.38382682894 118123.0473286997 132720.44839432166 100385.02702668066 85546.02421686545 109867.1757856175 0.5034768084631936 1.234396071641341 1.3916620347653974 1.498056458118183 1.4489621917419728 1.0751441136449325 1.20800819212189 0.9136944342918285 0.7786313210033757 1.0 16.745400901628326 1.7160066740055098 3.507227848873657 0.8734033021706656 1.223181812732657 0.19902151061321172 0.2683717988900729 0.3083771207132473 8.466970926850212 0.1569999143039893 0.07433089819235474 52.000398761550464 -1.7160066740055098 0.3497785105619914 HTDVQFYTEVGEITTDLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 HTDVQFYTEVGEITTDLGK 19 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ;; 224.19 2.026e-19 975920000.0 856950.0 836240.0 732890.0 703760.0 755940.0 943870.0 904130.0 845770.0 1223870.0 962990.0 False True 852336.2764160947 864073.7428822451 836074.5416059237 792855.9438418607 852204.4781925837 878622.488530988 860393.777787992 908885.6521330373 922263.637517795 901531.1537427818 0.9454318609817859 0.9584513405831522 0.9273939543130489 0.8794548480662627 0.9452856672280106 0.9745891585480029 0.9543694349507451 1.008157786183786 1.0229969687558111 1.0 19.78201782141737 2.068495591244324 1.181738437090675 1.0144160205307768 0.9309229758195319 0.668544775161102 0.023092196821861154 0.29906107509719343 0.7782120020402997 0.017950443879653256 0.008797131678842338 117.08347164901936 -2.068495591244324 -0.08349304471124497 HTEVLPAEEENDSLGADGTHGAGAMESAAGVLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTEVLPAEEENDSLGADGTHGAGAMESAAGVLIK 34 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 59.598 0.016488 90318000.0 58920.0 64493.0 54618.0 54650.0 56758.0 62223.0 65574.0 63678.0 76026.0 64037.0 False True 58602.78126662742 66639.61051815817 62307.73965183355 61568.68439660924 63985.79486897723 57921.67046718685 62401.935102993804 68429.97571033215 57290.41099620702 59950.103835165995 0.9775259343629651 1.1115845720865656 1.0393266344150116 1.026998794962784 1.067317498646999 0.9661646396217034 1.0408978652408871 1.141448827152689 0.9556348918715495 1.0 15.871474631977094 1.9829918076849138 24.895585999126514 1.0588516601361482 1.0341268410032767 0.0 0.05995098110291527 2990.48013486601 4377275.375017677 0.02373748004322579 0.015698780423258236 96.15941391790413 -1.9829918076849138 -0.0247248191328715 HTGCCGDNDPIDVCEIGSK ddPTM_BT-474_Trastuzumab_2h_R1 6 HTGCCGDNDPIDVCEIGSK 19 0 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 ;;;;; 306.82 8.449600000000001e-51 14036560000.0 11444750.0 10003850.0 8889730.0 9016890.0 8407690.0 11380850.0 10297270.0 9080370.0 14938950.0 10763500.0 False True 11383132.737631274 10336822.099794978 10141326.713081656 10158427.349477438 9478359.485217093 10594118.627139227 9799151.710708592 9757993.31858457 11257445.944174169 10076564.214904025 1.1296640893524732 1.0258280381428038 1.0064270416777419 1.0081241118329134 0.9406340577076717 1.0513621906432848 0.9724695344286975 0.9683849683756033 1.1171909099257789 1.0 23.26450047417271 4.790016765287085 2.2653420374959836 1.0023145260751882 1.172721920852471 0.3746977194505594 0.04637726097079232 0.7186871614047101 3.8393617715161086 0.011137759398802535 0.25639901876728594 61661.880504615154 -4.790016765287085 0.17040739477728284 HTGMASIDSSAPETTSDSS(ph)PTLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 HTGMASIDSSAPETTSDSSPTLSR 24 0 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52;H0YCW2;S4R3B3;H7C453;S4R3U7 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 HTGMASIDSSAPETTSDS(0.008)S(0.986)PT(0.006)LSR 254.79 5.2121e-44 685130000.0 195440.0 250920.0 225550.0 262370.0 273830.0 250700.0 247780.0 210510.0 250700.0 237480.0 True False 194387.7727554255 259271.72051565704 257305.47948425516 295586.0150985977 308700.62738243176 233369.69908432182 235793.93478848043 226219.3251481205 188918.34420789056 222323.82308314304 0.8743452233759483 1.1661895559374962 1.157345514826047 1.3295292020417289 1.3885179874177773 1.0496837264131065 1.0605878016963568 1.0175217482812027 0.8497440426671696 1.0 17.762303022902554 2.03020828682941 1.5977307998827868 0.9478195927973648 1.1834627226364987 0.32366758735736245 0.1368481706562317 0.47164933694243305 2.2567881658480102 0.0915099319993791 0.045686541509712894 107.2033327164574 -2.03020828682941 0.23564312983913382 HTGPGILSMANAGPNTNGSQFFICTAK ddPTM_BT-474_Trastuzumab_2h_R1 6 HTGPGILSMANAGPNTNGSQFFICTAK 27 0 P62937;F8WE65;C9J5S7;P62937-2 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;;;;; 330.44 3.277499999999998e-95 11783332000.0 3931290.0 3601282.0 3717196.0 3324700.0 3066984.0 4338282.0 4077107.0 3898083.0 4804275.0 4374054.0 False True 3910124.3714473816 3721148.494349062 4240544.88635316 3745606.6791108274 3457546.232961618 4038386.776557356 3879881.7583487616 4188977.7475243974 3620325.800236793 4094898.128903966 0.954877080786857 0.9087279774027147 1.0355678585557824 0.9147008206803354 0.8443546393880766 0.9861995706443287 0.9474916435557933 1.0229748373851764 0.8841064383708621 1.0 21.965396130896647 HTGPNS(ph)PDTANDGFVR ddPTM_BT-474_Trastuzumab_2h_R1 10 HTGPNSPDTANDGFVR 16 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;D6R9T0;D6RFM3;E5RGV0;D6RDU3;D6RJ04;D6RIH9;D6RAM1;E5RGH4;H0YAQ2;P55795;E7EQJ0 P31943;P55795;E7EQJ0 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 1 HTGPNS(1)PDTANDGFVR;HTGPNS(0.986)PDT(0.014)ANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HT(0.001)GPNS(0.999)PDTANDGFVR;HTGPNS(0.998)PDT(0.002)ANDGFVR;HTGPNS(0.859)PDT(0.141)ANDGFVR 340.25 5.483699999999998e-72 13487580000.0 3724907.0 4085746.0 3083580.0 3583361.0 3586254.0 3768371.0 3725989.0 2252011.0 3963511.0 3222762.0 True False 3704852.514588076 4221737.585724387 3517721.261042168 4037014.1351897204 4042942.1895071906 3507872.382561163 3545748.6774097756 2420067.496300148 2986756.822376388 3017082.570014637 1.2279586085607537 1.3992781065000506 1.1659346999658355 1.3380522546222975 1.3400170846128274 1.1626703284239732 1.1752242754803273 0.8021217318849869 0.9899486517407107 1.0 21.524722749309145 2.0110368478479987 2.4876719994189527 0.9150657276622648 1.282993656771358 0.7340490562186573 0.09063045862043086 0.129180625809625 1.5113196984125195 0.0446733772360716 0.025067136228318115 102.57389516942361 -2.0110368478479987 0.3679279291090932 HTGPNSPDTANDGFVR ddPTM_BT-474_Trastuzumab_2h_R1 8 HTGPNSPDTANDGFVR 16 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;D6R9T0;D6RFM3;E5RGV0;D6RDU3;D6RJ04;D6RIH9;D6RAM1;E5RGH4;H0YAQ2;P55795;E7EQJ0 P31943;P55795;E7EQJ0 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;;;; 310.46 1.2071999999999998e-57 31615840000.0 5980200.0 6899740.0 6707740.0 6702310.0 6786350.0 7107990.0 6805010.0 6244750.0 8001120.0 6983500.0 False True 5948003.26766268 7129393.674919084 7652131.48727874 7550821.758796666 7650551.446652173 6616631.381708694 6475825.668637324 6710764.955197976 6029351.185515102 6537807.051124842 0.9097856851923023 1.090487011801986 1.1704431512646394 1.154947171085071 1.170201473800895 1.01205669270559 0.9905195454679481 1.0264550334264417 0.9222283769414303 1.0 22.640375369113205 2.5868034338557138 6.3239924781083054 0.9925356686236783 1.105459860886578 0.3489416427215605 0.07454212768577126 0.2862012268361838 14.343281717284668 0.025260178298838684 0.02371893259064318 386.192142959705 -2.5868034338557138 0.11292419226289974 HTGYVIELQHVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTGYVIELQHVVK 13 0 P47897;A0A1B0GVU9;P47897-2;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8;A0A0U1RQX9 P47897 QARS Glutamine--tRNA ligase 0 139.74 2.2564e-05 306860000.0 191460.0 195270.0 183170.0 194490.0 201030.0 201080.0 209290.0 155460.0 250090.0 218420.0 False True 190429.20063320562 201769.44390679212 208958.74385781903 219112.41405849077 226629.97890183778 187179.81289140563 199165.84313455882 167061.2146098845 188458.67053430938 204480.24860122977 0.9312840821343776 0.9867429509061084 1.021901847670985 1.0715578426637975 1.1083221017781704 0.9153931207137622 0.9740101770071938 0.8170041642294824 0.9216473073731188 1.0 17.641601969822734 2.630252251989446 8.772887464789209 0.9098614229048295 1.0243365760064629 0.36252851321321133 0.06354056899099508 0.3325319817443776 24.62588860341972 0.021604279765623582 0.020353331748368793 426.82736166665654 -2.630252251989446 0.11447515310163336 HTKEDSAS(ph)VK ddPTM_BT-474_Trastuzumab_2h_R1 3 HTKEDSASVK 10 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 HTKEDS(0.005)AS(0.995)VK;HTKEDS(0.001)AS(0.999)VK;HTKEDSAS(1)VK 106.13 0.0014882 690560000.0 1780550.0 1271200.0 1107240.0 1041110.0 1130990.0 1316020.0 1516850.0 1367260.0 2912770.0 1551520.0 True False 1770963.7166377006 1313511.1235433721 1263129.7676973932 1172914.419252588 1275014.8725970732 1225046.6349778592 1443474.1705702902 1469291.8840056034 2194956.862618336 1452500.6652769009 1.2192515700501168 0.9043101700011738 0.8696242266137575 0.8075138602631804 0.8778067391480388 0.8434052143751133 0.9937855486593599 1.0115602141397309 1.5111572167162453 1.0 20.47010739373984 1.4356354776596367 5.284254262715092 1.2635829811807988 0.924017175397626 0.3914021896327029 0.1583553736216836 0.16932196449627157 8.952416209250018 0.0999206839944886 0.038149105665146295 27.266881934901527 -1.4356354776596367 -0.33956580578317286 HTLADNFNPVSEER ddPTM_BT-474_Trastuzumab_2h_R1 4 HTLADNFNPVSEER 14 0 P20645;H0YGT2 P20645 M6PR Cation-dependent mannose-6-phosphate receptor 0 ;;; 178.14 2.0165e-06 1752830000.0 973980.0 1159580.0 1038990.0 1070920.0 1148390.0 1243990.0 1087680.0 1043820.0 1302120.0 1020170.0 False True 968736.1998993506 1198175.9193190879 1185270.7609370274 1206498.3621960988 1294630.6594591925 1157995.8993374768 1035064.763058899 1121715.1488105613 981229.973514075 955061.8771885205 1.0143177348373325 1.2545531843928672 1.2410408050483475 1.26326721965675 1.3555463686502527 1.2124825909147863 1.0837672278427533 1.1744947375688675 1.0273993727009472 1.0 19.865234680905743 1.480725109442451 1.0356003748525393 1.0013904470603097 1.2288300373939274 0.4255746474709984 0.08887925474014449 0.4551045837225249 0.9598991972737587 0.0815475397267718 0.029496489797813434 30.249981225262072 -1.480725109442451 0.2274395903336177 HTLDQYVESDYTLLYLHHGLTSDNKPSLSWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 HTLDQYVESDYTLLYLHHGLTSDNKPSLSWLR 32 1 Q07960;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 ; 234.48 4.9434e-47 4651300000.0 414260.0 539230.0 534090.0 476320.0 540170.0 619930.0 543630.0 296840.0 636590.0 461260.0 False True 412029.6701886126 557177.944578581 609285.2296064988 536622.0631618099 608957.4476615705 577075.6982582514 517332.5400317274 318991.708122978 479710.9243689714 431821.991895446 0.9541655541442976 1.2902954343128652 1.4109638717845125 1.2426927605200304 1.41020480450429 1.3363740362671819 1.1980226800421632 0.7387111219666951 1.1108997072226938 1.0 18.720077193458582 1.926548173869022 6.829514492893762 0.9292154002402094 1.2844557067802715 0.48756225780165907 0.1482624389865695 0.19029595986867945 14.92797825093506 0.06276186686082542 0.038877424447581424 84.43999012943668 -1.926548173869022 0.3552403065400621 HTLGDS(ph)DNES ddPTM_BT-474_Trastuzumab_2h_R1 5 HTLGDSDNES 10 0 G3V192;P02794;G3V1D1 G3V192 FTH1 Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed 1 HTLGDS(1)DNES;HTLGDS(1)DNES;HTLGDS(0.999)DNES(0.001);HTLGDS(1)DNES;HTLGDS(0.994)DNES(0.006) 117.21 0.0010365 3126176000.0 3169310.0 3632730.0 2868840.0 3304390.0 3460310.0 3388870.0 3430050.0 3085820.0 3824340.0 3280520.0 True False 3152246.7871034425 3753643.222018339 3272747.7355957036 3722725.435193262 3900959.967635767 3154605.3934419034 3264125.377436541 3316099.557876455 2881882.6505305287 3071154.405005522 1.0264045278758216 1.2222254979757652 1.065640897201917 1.212158343170821 1.2701933713517581 1.0271725147717643 1.062833367191342 1.0797567040171308 0.9383711368707126 1.0 21.550349616231237 1.9531239461277305 1.092061038924671 0.9893366224692793 1.1532884976418933 0.3906830212124762 0.0801359510454769 0.5288059344847786 1.16021756574565 0.06277195729003969 0.028342031281419294 89.76849540949125 -1.9531239461277305 0.163951875172614 HTLQQHQETPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HTLQQHQETPK 11 0 Q7Z417;Q7Z417-2 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 0 ; 117.03 0.00052597 235000000.0 369110.0 381680.0 396500.0 399910.0 366480.0 384080.0 453110.0 324220.0 625780.0 459980.0 False True 367122.752771976 394383.9880695673 452323.753560218 450538.5649963036 413149.0557028573 357529.4536270697 431191.33825170796 348414.94275580096 471564.9040223923 430623.6825913088 0.8525373025533306 0.9158437030131122 1.0503921912476515 1.0462466027998172 0.9594201907723777 0.8302596166462808 1.0013182174677047 0.8090937791883371 1.095074244836505 1.0 18.716068138617995 2.9839926652613027 24.496588851632456 0.9260814603604224 0.9729351334917001 0.0 0.09574980995457993 1911.0817814035672 2924602.3671830506 0.02862476416215554 0.03120459848158176 963.8127457879981 -2.9839926652613027 0.04685367313127775 HTLSDMEYR ddPTM_BT-474_Trastuzumab_2h_R1 4 HTLSDMEYR 9 0 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 ;;; 153.05 7.9022e-05 896800000.0 352087.0 426257.0 424557.0 394837.0 369142.0 390181.0 436651.0 306789.0 507844.0 418176.0 False True 350191.40271254344 440444.7065672026 484330.9352844029 444823.32371644996 416150.04562394787 363208.70585727895 415528.52296119445 329683.15302297595 382692.6509609569 391487.6496615142 0.8945145600769882 1.12505389875777 1.2371550819116832 1.136238458865945 1.0629966130062012 0.9277654254771878 1.0614090210009597 0.8421291279763862 0.9775344159434873 1.0 18.578607269684586 2.880846945288685 3.694544476515401 0.9513125900946959 1.1095317768970823 0.31216229276922713 0.09562586010830115 0.26758942941157143 6.556277918925742 0.03080339860779147 0.03318426153889653 760.0583688267548 -2.880846945288685 0.15821918680238634 HTNFVEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 HTNFVEFR 8 0 M0R0N4;M0QYZ2;P53680;M0QZ21 M0R0N4 AP2S1 AP-2 complex subunit sigma 0 ; 120.33 0.001522 378400000.0 133794.0 167748.0 188152.0 159642.0 104939.0 158517.0 171876.0 100157.0 226070.0 154644.0 False True 133073.66796991086 173331.3907741927 214642.16615349872 179852.6608315371 118302.35962781649 147559.09289888098 163561.7012499187 107631.22392694082 170358.07768279937 144774.48752261067 0.9191789951881378 1.1972509365444797 1.4825966220048006 1.2422952683804043 0.8171492205029578 1.019234088988472 1.1297688152712257 0.743440545145298 1.1767133878211318 1.0 17.14344786437519 3.2582724336013653 24.781757542472356 0.9650639514746687 1.2288439150190948 0.28546102376373905 0.17565184914871465 254.66612511113848 320164.8201247488 0.049171850366616796 0.0664843697450155 1812.4767055283216 -3.2582724336013653 0.2637799635444261 HTNLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 HTNLTK 6 0 G3V3Y1;Q8N8N7;Q8N8N7-2 G3V3Y1 PTGR2 Prostaglandin reductase 2 0 ; 101.64 0.036291 189428000.0 291290.0 294180.0 264560.0 263890.0 273010.0 244110.0 291060.0 272720.0 425990.0 333230.0 False True 289721.7270053616 303971.6034644348 301807.74840325693 297298.44694274844 307776.20524295256 227235.25027313046 276980.3158428244 293071.7512440998 321010.47247355146 311962.9761074441 0.9287054849277295 0.9743835863386014 0.9674473303502222 0.9529927257789559 0.9865792700251406 0.728404546938505 0.8878627819841954 0.9394440164052099 1.0290018273289947 1.0 18.25101529405104 1.337036798636946 4.660621221709025 1.0139371131661572 0.9186856507535877 0.2265907184020286 0.07003072163274093 0.32895015237093755 10.916670030419306 0.05502590985594223 0.018774552687550437 21.72885283964236 -1.337036798636946 -0.09525146241256954 HTNPSSSS(ph)PGTRT ddPTM_BT-474_Trastuzumab_2h_R1 1 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 HTNPSS(0.001)S(0.117)S(0.862)PGT(0.018)RT(0.002) 74.14699999999998 0.021377 39983000.0 36883.0 58557.0 44326.0 56511.0 50371.0 46266.0 45320.0 43923.0 55003.0 50733.0 True False 36684.42602608654 60506.03434654601 50566.715511501214 63665.28680579667 56785.44827769217 43067.74031844924 43127.69846078751 47200.75729647475 41448.24765243959 47495.17650529349 0.7723821390999135 1.273940614575933 1.0646705461946306 1.3404579473181022 1.1956045319962807 0.9067813510209654 0.9080437558955232 0.9938010713827766 0.8726833060157182 1.0 15.535493383830048 2.7354326988462403 24.79881525234105 0.9383609253898723 1.1455686941754735 0.29867886505038166 0.14692869609303646 288.48873937589315 2287192.619907497 0.044979435818535016 0.04408013549472498 543.7918555974571 -2.7354326988462403 0.2072077687856012 HTNYTMEHIR ddPTM_BT-474_Trastuzumab_2h_R1 3 HTNYTMEHIR 10 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;F6THM6;A0A494C060;P12814-3;P12814;P12814-2;P12814-4;H9KV75;P35609-2;P35609;A0A494C1A0;H7C5W8;H0YJ11;H0YJW3 O43707;P12814-3 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 ;; 91.313 0.005918199999999999 520863000.0 109463.0 151430.0 150040.0 142986.0 113809.0 92857.0 124048.0 88874.0 116987.0 129372.0 False True 108873.66337048264 156470.25600863207 171164.32782894105 161088.012939315 128301.90155120759 86438.01415186629 118047.32433062152 95506.2291730276 88157.12139548654 121115.36819905844 0.8989252560545742 1.291910831261862 1.4132337652445968 1.3300377593251398 1.0593362630936956 0.7136832875725696 0.9746684181036839 0.7885558256823272 0.7278772521303525 1.0 16.886022413109373 2.9855742022348757 4.388734244451361 0.8375602148759788 1.2479475982278185 0.5940782735583982 0.1529200256036953 0.13518863630597433 6.3898748419579485 0.04666846574882401 0.052766214820646966 967.3289874216459 -2.9855742022348757 0.4103873833518398 HTPS(ph)PGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 HT(0.139)PS(0.861)PGLPAEGAPEAPRPS(0.551)S(0.449)PPPEVLEPHSLDQPPATSPR;HT(0.005)PS(0.995)PGLPAEGAPEAPRPS(0.545)S(0.455)PPPEVLEPHSLDQPPATSPR;HT(0.002)PS(0.998)PGLPAEGAPEAPRPS(0.553)S(0.447)PPPEVLEPHSLDQPPATSPR;HT(0.032)PS(0.968)PGLPAEGAPEAPRPS(0.535)S(0.465)PPPEVLEPHSLDQPPATSPR 270.88 6.2337999999999974e-77 4219800000.0 297364.0 319793.0 286883.0 310083.0 315479.0 367841.0 343810.0 323685.0 414988.0 350244.0 True False 295763.02526424616 330437.1166860495 327273.63276826235 349339.4760064741 355653.3806594681 342413.0174745748 327178.59681825544 347840.01833912573 312719.7679543043 327891.1280610257 0.9020159435640479 1.0077647377654877 0.9981167673050049 1.0654130170348999 1.0846691179557486 1.044288753707439 0.9978269273493803 1.0608399818441785 0.9537304952517722 1.0 18.3228573408658 5.0012473246920335 1.4742228890042774 1.0328537113347733 0.770881000461859 0.48536263919865497 0.03769241450397523 1.8112004995383906 2.2082977756577833 0.009924133964724328 0.8333274300822027 100287.61995899663 -5.0012473246920335 -0.2619727108729143 HTPS(ph)PGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 HT(0.151)PS(0.849)PGLPAEGAPEAPRPS(0.517)S(0.48)PPPEVLEPHS(0.003)LDQPPATSPRPLIEVGELLDLTR 101.9 5.0244e-10 334500000.0 0.0 0.0 0.0 0.0 1476.2 0.0 0.0 0.0 0.0 0.0 True False 0.0 0.0 0.0 0.0 1664.1853198770957 0.0 0.0 0.0 0.0 0.0 0.0 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPAT(ph)SPRPLIEVGELLDLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 HTPSPGLPAEGAPEAPRPS(0.476)S(0.48)PPPEVLEPHS(0.189)LDQPPAT(0.418)S(0.418)PRPLIEVGELLDLT(0.018)R;HTPS(0.001)PGLPAEGAPEAPRPS(0.451)S(0.451)PPPEVLEPHS(0.11)LDQPPAT(0.462)S(0.462)PRPLIEVGELLDLT(0.062)R 75.475 1.2065e-05 681050000.0 43837.0 62278.0 65628.0 58640.0 66017.0 65822.0 61470.0 41048.0 62514.0 51827.0 True False 43600.98646274857 64350.88558215403 74867.85195119798 66063.81798750543 74423.8736365847 61271.880068321596 58496.4612617963 44111.21019752057 47108.26234468318 48519.35648867297 0.8986307654951563 1.3262930557864465 1.5430512143885537 1.3615971597423862 1.533900674341368 1.2628337328139492 1.2056314323841562 0.9091466455829541 0.9709168825369887 1.0 15.566272795697138 1.9640192702304209 2.4646949712890645 0.9512049867515096 1.3441435674077122 0.47109680724391656 0.16948386746307095 0.2465003923032695 2.7647184416154857 0.09384132235391551 0.05020567945033679 92.04904142450675 -1.9640192702304209 0.3929385806562027 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 HTPSPGLPAEGAPEAPRPS(0.49)S(0.49)PPPEVLEPHS(0.011)LDQPPAT(0.005)S(0.005)PR;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPR;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPR;HTPSPGLPAEGAPEAPRPS(0.497)S(0.497)PPPEVLEPHS(0.003)LDQPPAT(0.001)S(0.001)PR 197.67 2.3151999999999994e-31 8395900000.0 730510.0 776470.0 749274.0 776480.0 762258.0 840430.0 857250.0 734378.0 869500.0 896010.0 True False 726577.0153272913 802314.3345639725 854765.266393642 874782.2883857115 859327.0380428649 782333.0522594205 815781.5424869839 789181.0154559244 655223.3757030745 838825.874687245 0.8661833608771242 0.9564730402040998 1.019002026746421 1.0428651699756792 1.0244403087390022 0.9326525037763198 0.9725278715217827 0.9408162519428355 0.7811196524515575 1.0 19.678011838383515 1.483093155146155 5.4213363433743 0.881200199645285 0.9761778397732415 0.18008061070925596 0.06882760157560147 0.2186383053314606 14.493754978747434 0.04096130647092603 0.017281019735538354 30.415373583302692 -1.483093155146155 0.09497764012795651 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 HTPSPGLPAEGAPEAPRPS(0.52)S(0.48)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 153.34 4.9003e-19 1141510000.0 47991.0 71577.0 53819.0 74288.0 68947.0 78177.0 76670.0 59035.0 93025.0 78997.0 True False 47732.62178830138 73959.39717578971 61396.24739686604 83692.85318307983 77726.99176911401 72772.8079988632 72961.17919215749 63440.49147365584 70100.23522113686 73955.34382726558 0.6454249188508742 1.0000548080546228 0.830180000788945 1.1316674205255235 1.0509989913731956 0.9840101368311615 0.9865572305710577 0.8578216013954469 0.9478724807887725 1.0 16.174366776157818 4.741780268151447 24.815127001605376 0.9702568977508743 0.645424785474322 0.5927374081932228 0.08219754428310745 205.68416210742637 1585206.7004479275 0.020527520530978484 0.1461932452812779 55179.8185644607 -4.741780268151447 -0.3248321122765523 HTPSPGLPAEGAPEAPRPSS(ph)PPPEVLEPHSLDQPPAT(ph)SPRPLIEVGELLDLTR ddPTM_BT-474_Trastuzumab_2h_R1 5 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 HTPSPGLPAEGAPEAPRPS(0.484)S(0.516)PPPEVLEPHS(0.058)LDQPPAT(0.486)S(0.456)PRPLIEVGELLDLTR;HTPSPGLPAEGAPEAPRPS(0.476)S(0.524)PPPEVLEPHSLDQPPAT(0.524)S(0.476)PRPLIEVGELLDLTR;HT(0.031)PS(0.145)PGLPAEGAPEAPRPS(0.451)S(0.484)PPPEVLEPHS(0.02)LDQPPAT(0.454)S(0.415)PRPLIEVGELLDLTR;HTPSPGLPAEGAPEAPRPS(0.48)S(0.511)PPPEVLEPHS(0.16)LDQPPAT(0.429)S(0.397)PRPLIEVGELLDLT(0.023)R;HTPSPGLPAEGAPEAPRPS(0.48)S(0.515)PPPEVLEPHS(0.018)LDQPPAT(0.511)S(0.476)PRPLIEVGELLDLT(0.001)R 160.52 9.5304e-23 3140230000.0 172818.0 226960.0 216320.0 219201.0 216033.0 242591.0 203768.0 160151.0 199159.0 184693.0 True False 171887.56708988475 234514.2263997827 246775.9757128536 246951.8241248154 243543.5220220895 225821.255167789 193910.96337064743 172102.28085029995 150078.93304387413 172905.73461636747 0.9941114299722807 1.3563125995798135 1.4272284043116605 1.4282454232807074 1.4085335143015862 1.3060368163544558 1.1214837020928488 0.9953532266130434 0.8679812348437139 1.0 17.39962619284093 1.9932817986014253 1.9293658799226059 0.9408923057370021 1.3390076610435904 0.6428193278990922 0.12286923106974856 0.2101997342138662 1.4574998338999017 0.07455165972895848 0.038046199350729004 98.46498035740046 -1.9932817986014253 0.39811535530658826 HTPSPGLPAEGAPEAPRPSS(ph)PPPEVLEPHSLDQPPATSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 HTPSPGLPAEGAPEAPRPS(0.127)S(0.873)PPPEVLEPHSLDQPPATSPR;HTPSPGLPAEGAPEAPRPS(0.171)S(0.829)PPPEVLEPHSLDQPPATSPR 323.34 1.7060999999999994e-111 1673570000.0 209242.0 214358.0 214188.0 235914.0 232867.0 244370.0 256116.0 224777.0 257371.0 271070.0 True False 208115.4643209719 221492.77644785237 244343.80864452972 265780.68821119267 262521.2321391542 227477.27708510458 243726.690621868 241551.00113447866 193945.36564471095 253770.08052529738 0.8200945670591993 0.8728088669451031 0.9628550699859671 1.04732869872222 1.0344845680615389 0.8963912397168043 0.9604232702190904 0.9518498029179581 0.7642562324260179 1.0 17.95316245999788 4.395262506962962 3.495222322947397 0.9549537711733695 0.8285483051909976 0.25012397880570836 0.07549461683362639 0.3117611091568705 7.254648371519493 0.01906946401065432 0.06673479329173339 24846.34475442967 -4.395262506962962 -0.1264054659823719 HTPYGNQTDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 HTPYGNQTDYR 11 0 Q86U70-2;Q86U70;A0A6E1WJ75;Q86U70-3 Q86U70-2 LDB1 LIM domain-binding protein 1 0 110.38 0.0018023 89094000.0 57069.0 74427.0 71302.0 70480.0 63179.0 74929.0 84048.0 62697.0 90819.0 74111.0 False True 56761.74684496199 76904.25770292849 81340.7018319059 79402.76077352281 71224.47115872843 69749.33459389364 79982.27714546044 67375.76850891502 68437.87436225142 69381.17253038066 0.8181145514672173 1.108431219856563 1.1723742748263355 1.1444424744876414 1.0265677064990595 1.0053063684294434 1.1527951204692852 0.9710958470673364 0.9864041189601374 1.0 16.08225660168818 1.615410397734111 24.999999984930987 0.9840608429202496 1.0666168613104168 0.11066435593225976 0.09693362946476596 1.2794390531518873 4226.474363715456 0.045965137441167925 0.024865560194315007 41.24871252960737 -1.615410397734111 0.08255601839016713 HTQENCETWGVNGETGTLVDMK ddPTM_BT-474_Trastuzumab_2h_R1 4 HTQENCETWGVNGETGTLVDMK 22 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ;;; 253.93 4.8687e-37 2605080000.0 1295060.0 1094680.0 984790.0 973140.0 999930.0 1331950.0 1292280.0 1140290.0 1687830.0 1312370.0 False True 1288087.540854691 1131115.762051965 1123439.8720518714 1096339.424221708 1127265.1584505523 1239875.431573045 1229767.4794109976 1225384.230075294 1271886.912263277 1228613.423023514 1.0484075110337117 0.9206441512484738 0.9143965473592016 0.8923387972790572 0.9175100461432757 1.0091664378220906 1.0009393161151077 0.9973716769752741 1.0352214035992466 1.0 20.228599619763447 2.7316989461011643 24.35216826517328 1.006829708934505 0.9337372579104841 0.4202507375915283 0.04080963119214208 371.00835383854684 1316711.2306989057 0.013245197100910388 0.012750909860194993 539.1367621494657 -2.7316989461011643 -0.07309245102402095 HTQGAQPGLADQAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTQGAQPGLADQAAK 15 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 135.47 2.8835e-05 189710000.0 193440.0 173210.0 135030.0 147410.0 178480.0 197110.0 186110.0 168640.0 247410.0 175710.0 False True 192398.5405332046 178975.1901423441 154041.05029820002 166072.09088571215 201208.37006615938 183484.24964703104 177107.148290758 181224.77313656863 186439.12062414893 164496.0373671006 1.1696241661058064 1.0880212861476464 0.9364423165673681 1.0095811032523192 1.2231806509547036 1.1154326425356682 1.076665135072607 1.1016968921393229 1.1333958167519784 1.0 17.32769330496456 4.727026937472717 5.996718397126512 1.0794331105812736 1.1715997686520496 0.12052425815383938 0.07552760755907569 0.28830874671061313 48.287385156303145 0.01884664049259843 0.1051643234254957 53336.79770494574 -4.727026937472717 0.09216665807077606 HTQLEQMFR ddPTM_BT-474_Trastuzumab_2h_R1 1 HTQLEQMFR 9 0 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 147.73 9.1697e-05 297970000.0 293450.0 503620.0 552520.0 469600.0 475490.0 443140.0 456230.0 413210.0 344230.0 471630.0 False True 291870.0978053602 520382.68725528143 630310.013410068 529051.3118508274 536040.8330499663 412506.7748393552 434160.4119321504 444045.82843786513 259399.1289456806 441530.16961724224 0.6610422523524933 1.178589195176392 1.427558198246061 1.1982223373534278 1.2140525606996557 0.9342663383499997 0.983308597708101 1.0056975921323874 0.5875003494564164 1.0 18.752152494575792 2.7130929718218675 10.778211801690077 0.9177700463187684 1.1579223067823035 0.2269073546414292 0.21282230042063646 1.169483622258011 490.3449023202134 0.06964191893135237 0.06622893163378027 516.526933214687 -2.7130929718218675 0.2401522604635351 HTQSMS(ph)SARER ddPTM_BT-474_Trastuzumab_2h_R1 1 HTQSMSSARER 11 1 K7EJR8;B5MDG7;Q9P0W2-2;Q9P0W2-3;Q9P0W2 K7EJR8 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related 1 HT(0.004)QS(0.006)MS(0.495)S(0.495)ARER 76.07300000000002 0.022015 529850000.0 190030.0 337700.0 355870.0 332660.0 323130.0 248320.0 287020.0 220790.0 175330.0 264060.0 True False 189006.89959431769 348940.14035603934 405973.40272250876 374774.7218916016 364278.6901584376 231154.22288240417 273135.74607712345 237266.470948903 132122.27080163316 247207.46472686017 0.7645679300305581 1.4115275230122348 1.6422376370028684 1.516033192224558 1.4735747990495738 0.9350616622269345 1.1048847023244686 0.9597868381970546 0.5344590663862647 1.0 17.915362782249588 2.7309571907242756 23.661306497501972 0.9255205527599752 1.388534534063625 0.4331167208356683 0.2587719127057266 275.7487201751761 858107.0720073605 0.08505498077081222 0.08171640510702381 538.2167268021657 -2.7309571907242756 0.4630139813036498 HTTDLDASK ddPTM_BT-474_Trastuzumab_2h_R1 2 HTTDLDASK 9 0 P12532;P12532-2;F8WCN3;C9JSQ1;P17540;C9J8F6;C9J6W7;C9JT96;D6RHV3;D6R998 P12532 CKMT1A;CKMT1B;CKMT2 Creatine kinase U-type, mitochondrial;Creatine kinase S-type, mitochondrial 0 ; 140.45 0.00010908 1158550000.0 1118970.0 1464260.0 1444950.0 1355240.0 1450030.0 1592960.0 1523970.0 1174580.0 1828980.0 1470280.0 False True 1112945.5898492532 1512997.008936137 1648386.4002694506 1526813.2450441124 1634682.725498837 1482842.424624495 1450249.7489692483 1262233.1239963875 1378252.3860763775 1376445.4716299633 0.8085649688187952 1.0992059185203114 1.1975675275515707 1.1092435381665255 1.1876116847281089 1.0772983421337703 1.053619470484281 0.9170237034538481 1.0013127395771622 1.0 20.39251602751973 1.9364615841619972 4.8605670893681445 0.9664235428915664 1.0907582278699615 0.1728840867448418 0.1028978792203179 0.33397886487194106 15.34811075114044 0.04717839784830785 0.02828946905683847 86.38962407268173 -1.9364615841619972 0.12433468497839506 HTTEAAAGALQNITAGDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 HTTEAAAGALQNITAGDRR 19 1 Q9Y446;Q9Y446-2 Q9Y446 PKP3 Plakophilin-3 0 153.21 3.1162e-08 227020000.0 530080.0 630500.0 653110.0 551460.0 459910.0 648590.0 623150.0 541330.0 930890.0 630870.0 False True 527226.1081774243 651485.8113547013 745062.2110661148 621274.7794575316 518476.812399862 603754.4999166348 593005.8538358277 581726.7934180419 701484.6327869295 590607.33648502 0.8926846579915397 1.1030777491387045 1.261518719866109 1.0519252658712774 0.8778705924744511 1.0222604133396982 1.0040611032112847 0.984963710204092 1.187734370117703 1.0 19.171839752081752 4.751692928436738 23.936641758882008 1.0488915192504664 0.892684473107232 0.18064759993040347 0.10289669779074583 2356.6613642848106 4295415.234931706 0.025921318636615395 0.4718323981076563 56453.76725581464 -4.751692928436738 -0.15620704614323444 HTTENKPHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 HTTENKPHSPK 11 1 A0A2R8Y6S3;C9J167;Q68D20;P54278-3;P54278 A0A2R8Y6S3 PMS2;PMS2CL Protein PMS2CL;Mismatch repair endonuclease PMS2 1 HTTENKPHS(1)PK;HTT(0.005)ENKPHS(0.994)PK;HTTENKPHS(1)PK;HTTENKPHS(1)PK 124.25 0.00021319 636090000.0 548656.0 427658.0 378076.0 373209.0 367274.0 507527.0 561536.0 338611.0 777209.0 455929.0 True False 545702.097057412 441892.33800528006 431305.8145044969 420457.2211340193 414044.16689645086 472442.85308005067 534372.3584041658 363879.8722518184 585676.2560170343 426831.2208795448 1.2784962073133201 1.0352858844174981 1.0104832856784272 0.9850666974819907 0.9700418962869107 1.1068610494483435 1.251952369611149 0.8525146579062178 1.3721495227321172 1.0 18.70330618143497 1.2344086895004955 24.99999935716219 1.1860745613792107 1.0542670547071138 0.10175199775960386 0.1470496417268286 237.82313892643546 1431908.4067358756 0.11792279959403572 0.0335656365690845 17.15570973068194 -1.2344086895004955 -0.13180750667209695 HTTENKPHSPKT(ph)PEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HTTENKPHSPKTPEPR 16 2 A0A2R8Y6S3;C9J167;Q68D20;P54278-3;P54278 A0A2R8Y6S3 PMS2;PMS2CL Protein PMS2CL;Mismatch repair endonuclease PMS2 1 HTTENKPHS(0.109)PKT(0.891)PEPR;HTTENKPHS(0.008)PKT(0.992)PEPR;HTTENKPHS(0.01)PKT(0.99)PEPR;HTTENKPHS(0.003)PKT(0.997)PEPR 149.33 8.5056e-07 749960000.0 510070.0 400278.0 418353.0 403010.0 379769.0 636810.0 621460.0 429894.0 904760.0 532810.0 True False 507323.8397941044 413601.01125683956 477253.4660105368 454031.024678454 428130.3310827836 592788.8235894967 591397.6055922548 461974.8732374999 681794.0211628679 498805.6096384096 1.0170772541268527 0.8291827583027066 0.9567924994999631 0.9102364045335952 0.8583109788864255 1.1884165136378813 1.1856274150985717 0.9261621447529255 1.366853154793325 1.0 18.928118164448033 2.7417329960383183 24.970642146376058 1.1163902332002573 0.911722849106934 0.4493401453817547 0.12051780060484203 270.077246123261 2125855.2372010127 0.036444496635388055 0.03718554034309658 551.7381267496365 -2.7417329960383183 -0.2046673840933233 HTTSIFDDFSHYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HTTSIFDDFSHYEK 14 0 Q9Y5A9;Q9Y5A9-2 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 0 83.69200000000002 0.004874600000000001 136620000.0 155900.0 193480.0 160260.0 150170.0 163260.0 156800.0 178060.0 135060.0 211740.0 174770.0 False True 155060.65172211843 199919.8648388703 182823.2149951087 169181.50660272295 184050.1932821668 145960.78506749778 169446.55754474443 145138.86302078355 159559.514170637 163616.0289718753 0.9477106411669025 1.2218843477324306 1.1173918358972947 1.034015479203473 1.1248909684380863 0.8920934335387619 1.035635436268114 0.8870699523317006 0.9752071063774835 1.0 17.319954566148372 2.7460694826523335 24.975819562026746 0.9522858782232978 1.0950539750440886 0.41351682154924296 0.07780510854221975 505.89001666119304 1682679.3365346713 0.02269234443773558 0.0236587834701099 557.2749000550439 -2.7460694826523335 0.14276809682079084 HTVDDGLDIR ddPTM_BT-474_Trastuzumab_2h_R1 4 HTVDDGLDIR 10 0 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;;; 192.38 6.887100000000001e-07 4662220000.0 3425240.0 3813960.0 3418380.0 3416690.0 3157160.0 3528070.0 3725750.0 2879220.0 4799100.0 3618420.0 False True 3406798.8884199373 3940905.353012493 3899658.1909083934 3849242.603678881 3559205.6120465877 3284182.825083459 3545521.2387528433 3094082.016782919 3616426.109645342 3387489.337714781 1.0057002543122933 1.1633705556313423 1.1511942332899339 1.1363113562670581 1.0506913106470905 0.969503516518516 1.0466516305390563 0.9133850200898945 1.0675830236221504 1.0 21.69178497484597 3.0216920027848517 3.57352235678019 0.9918780761692167 1.1198278629604306 0.47397202441615927 0.05639823983668357 0.1785937624151695 4.886553229014253 0.0168166980030509 0.019635132531003723 1051.216097675902 -3.0216920027848517 0.12794978679121383 HTVDDGLDIRK ddPTM_BT-474_Trastuzumab_2h_R1 4 HTVDDGLDIRK 11 1 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;;; 167.12 1.2738e-05 842780000.0 796750.0 927730.0 866390.0 912440.0 884290.0 1007500.0 1044850.0 866900.0 1408230.0 1051460.0 False True 792460.3865272467 958608.9322253722 988370.18120312 1027954.8104454179 996899.089902532 937853.8963998978 994306.6137853888 931592.4800290053 1061190.5858152295 984354.9225998052 0.8050555428059009 0.9738448096480946 1.0040790760640583 1.0442928529584228 1.012743540987834 0.9527598987597966 1.010109860739356 0.9463989650892916 1.0780568689721097 1.0 19.908819067187427 4.742902983370869 3.1583895924475027 1.000952471383836 0.7748057832587177 0.7280156938803651 0.036561203478412 0.184024485325665 2.8297905291319796 0.008830115854087831 0.10361051862914189 55322.65106696311 -4.742902983370869 -0.2261466881251183 HTVIAAQS(ph)LEALSGLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HTVIAAQSLEALSGLQK 17 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 HTVIAAQS(1)LEALSGLQK;HT(0.007)VIAAQS(0.993)LEALSGLQK 273.27 7.563e-36 1226450000.0 2165470.0 1567250.0 1454670.0 1399400.0 1215550.0 1826510.0 1618560.0 1704120.0 2597470.0 1800830.0 True False 2153811.350126334 1619414.968827368 1659474.8917816982 1576563.8965162851 1370343.0873706853 1700247.6628420593 1540264.0693003593 1831290.087746023 1957358.322814798 1685899.487631869 1.2775443411230443 0.9605643638353021 0.9843261143122544 0.9351470286824962 0.81282608923238 1.008510694329912 0.9136155984387425 1.0862391863695147 1.1610172119835203 1.0 20.685087095510674 -0.1355365579408153 7.367928117008428 0.9999981366533696 1.0057435426443595 0.0 0.12556322168307346 0.0 0.0 0.12040110349512377 0.028378812271274142 0.7319197092379667 0.1355365579408153 0.005745405990989938 HTWMEDADSCVAHNALECAR ddPTM_BT-474_Trastuzumab_2h_R1 3 HTWMEDADSCVAHNALECAR 20 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ;; 271.48 1.2222999999999999e-44 787700000.0 74991.0 106354.0 85876.0 100824.0 100498.0 105922.0 99439.0 69712.0 108884.0 90450.0 False True 74587.25678828338 109893.92859764922 97966.59435242698 113588.30806228226 113295.82460168579 98599.86145356802 94628.75567613085 74914.2634303634 82050.9971708494 84677.40356185913 0.8808401492116533 1.2977952083446764 1.1569390443208352 1.3414240787307907 1.3379699876947706 1.164417628624361 1.1175207516489567 0.8847019426574234 0.9689833854070518 1.0 16.36968941264249 1.9701747762036124 2.9968968656855735 0.9426805847970218 1.2118052543103406 0.41861066641237743 0.12782069716583855 0.2303619182533983 3.911345326102132 0.06301791761611707 0.035759221910612614 93.36299525167001 -1.9701747762036124 0.2691246695133188 HVAAGTQQPYTDGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVAAGTQQPYTDGVR 15 0 P14923 P14923 JUP Junction plakoglobin 0 ; 146.1 3.9433999999999985e-06 575090000.0 2490000.0 2403000.0 2257760.0 2160140.0 2136130.0 2143840.0 2842700.0 2467600.0 3575300.0 2902600.0 False True 2476594.1166650103 2482982.4023558227 2575632.9831982814 2433613.5025158543 2408153.4936655345 1995641.3868565324 2705187.7408314375 2651744.84221891 2694215.2215655036 2717353.5829591164 0.9113992864955298 0.9137502082640013 0.9478460953150949 0.895582200924225 0.8862127876060677 0.7344062250019516 0.9955229079483905 0.9758556482484843 0.991484964805936 1.0 21.37377087106081 HVAEVLEYTKDEQLESLFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 HVAEVLEYTKDEQLESLFQR 20 1 P05198;G3V4T5;H0YJS4 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 177.4 3.9437e-17 1011900000.0 406450.0 498270.0 470730.0 395820.0 374570.0 473640.0 474870.0 386780.0 584330.0 524710.0 False True 404261.71836084017 514854.6157394244 537004.6923414916 445930.7714156611 422269.2692496712 440898.3816286329 451898.7239204356 415643.48762904445 440329.701120848 491222.55857316864 0.8229705890036492 1.0481086561555697 1.093200389455452 0.9077978273451762 0.8596292289104498 0.8975532046192869 0.9199470098300144 0.8461408792713934 0.8963955205963123 1.0 18.90601729001937 3.5089219316679294 23.76644652185907 0.8924687604914121 0.9951622002838088 0.19589354846122764 0.07592678368553535 458.0708306839835 342340.55071526335 0.01955697748086759 0.030257218093449376 3227.913823068441 -3.5089219316679294 0.10269343979239665 HVAVTNMNEHSSR ddPTM_BT-474_Trastuzumab_2h_R1 8 HVAVTNMNEHSSR 13 0 P33176;O60282;Q12840;J3KNA1;A0A0G2JMZ6 P33176;Q12840 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-like protein 0 ;;;;;;; 180.48 7.439299999999998e-06 2285515000.0 250935.7 482363.0 540109.0 613037.0 608017.0 510440.0 566686.0 470512.0 448437.0 556071.0 False True 249584.69007277724 498418.16086040955 616151.6524884137 690647.4213439001 685444.3609508955 475154.48424651474 539273.2332292546 505623.99465152423 337925.7100979406 520582.0727036647 0.4794338936347707 0.9574247500914775 1.1835821569659601 1.3266830679685029 1.31668837036783 0.912736932677647 1.035904349199957 0.9712666285750966 0.6491305171976233 1.0 18.989766104913283 1.4622514741453976 4.926380311428685 0.8172375409111822 1.048259128303175 0.09704763107576597 0.24106147272187198 0.38925717109256186 19.527415043971033 0.16204856284265295 0.06410442772093009 28.990217531403417 -1.4622514741453976 0.23102158739199286 HVCEMLVQR ddPTM_BT-474_Trastuzumab_2h_R1 3 HVCEMLVQR 9 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ;; 132.38 0.00030668 605960000.0 170834.0 183548.0 207485.0 192235.0 171620.0 178175.0 186743.0 197257.0 230741.0 204106.0 False True 169914.2487254418 189657.28422289094 236697.08450805023 216571.9312897014 193474.78972856497 165858.18162883524 177709.5276624632 211977.31899075 173877.97232099262 191079.7803360618 0.88923196597047 0.9925554859301751 1.2387343343799062 1.1334110333851402 1.0125340807294783 0.8680048790988348 0.9300279043126192 1.10936551537758 0.9099757808763674 1.0 17.54381559784776 3.008336586854247 23.33347892831469 0.975055843143442 1.0711896366386187 0.16545935033687842 0.10373947620222086 173.2045991899159 484776.5072795838 0.032482511198386715 0.038744530156426205 1019.3811226128726 -3.008336586854247 0.0961337934951767 HVDAHATLNDGVVVQVMGLLSNNNQALR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVDAHATLNDGVVVQVMGLLSNNNQALR 28 0 Q13283;E5RH42;E5RIZ6;E5RJU8;Q13283-2;E5RIF8 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ; 197.08 3.1985999999999995e-25 508420000.0 379780.0 466950.0 456690.0 434520.0 457570.0 509660.0 519560.0 334520.0 538640.0 442220.0 False True 377735.3066775248 482492.1484727647 520987.98237935983 489530.18744766124 515838.8272701276 474428.4038105923 494426.897888057 359483.5810581407 405899.38940621517 413997.1409964104 0.9124104233386482 1.1654480205141036 1.2584337687101976 1.1824482320565246 1.245996110090529 1.14597024189282 1.194276116733724 0.8683238251185355 0.9804400784732341 1.0 18.65926127915527 1.751570247257703 14.448989076198087 0.944199787234344 1.1658958246546363 0.4990054046665148 0.09534248520179281 0.16395675775237978 178.3540791692579 0.04419609935972251 0.02437363518753233 56.437822230277426 -1.751570247257703 0.2216960374202923 HVDAHATLSDGVVVQVMGLLSNSGQPER ddPTM_BT-474_Trastuzumab_2h_R1 1 HVDAHATLSDGVVVQVMGLLSNSGQPER 28 0 Q9UN86-2;Q9UN86;D6RB17;D6RAC7;D6RE13;D6RBW8;D6RGJ4 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 88.51700000000002 0.0019186 25756000.0 13950.0 17433.0 15788.0 15950.0 19950.0 18726.0 18565.0 10378.0 17579.0 17402.0 False True 13874.894749990704 18013.24686652897 18010.81316824396 17969.26836460966 22490.514247085808 17431.515696262508 17666.94002481289 11152.459058416205 13246.890996531742 16291.389461398248 0.8516704350397292 1.1056912554457428 1.1055418698889872 1.1029917618252927 1.3805154127814647 1.0699833637619272 1.0844342078172 0.684561564551721 0.8131222341666857 1.0 13.991822033356613 1.7569652358347636 24.999999999927137 0.8062037030699876 1.11027738544598 0.43108235370517556 0.13953345016313703 6.172104746982181 8392.335545069354 0.06423398086911765 0.03562151713255619 57.143289309589974 -1.7569652358347636 0.3040736823759924 HVDNIMFENHTVADR ddPTM_BT-474_Trastuzumab_2h_R1 4 HVDNIMFENHTVADR 15 0 Q8TAT6;Q8TAT6-2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 ;;; 199.49 4.2744e-09 2942930000.0 2462830.0 3248680.0 2999520.0 3270870.0 3086770.0 3106770.0 3010620.0 2732490.0 3546400.0 3019690.0 False True 2449570.3969261376 3356810.3499314673 3421826.343704784 3684961.806630139 3479851.8627808066 2892006.3024499314 2864984.808914743 2936402.2791030696 2672437.239325344 2826970.7989133233 0.8665000706295739 1.1874230717989065 1.2104215384963017 1.3035018996470087 1.2309472259559413 1.0230053679937576 1.013446905789063 1.038709802107546 0.9453359901533538 1.0 21.430825550307016 2.6745097119753005 7.171464970643459 1.009143218902257 1.171935148282961 0.33055332745110644 0.11000102011354577 0.32324997217444684 31.513301369623065 0.03669803750021842 0.03463302282806867 472.6174057575811 -2.6745097119753005 0.16279192938070386 HVDWVK ddPTM_BT-474_Trastuzumab_2h_R1 3 HVDWVK 6 0 P40123;E9PDI2;F8WDB9;Q01518-2;Q01518;Q5T0R1;Q5T0R9;Q5T0R4;Q5T0R3;Q5T0R2 P40123;Q01518-2 CAP2;CAP1 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 0 ;; 97.64 0.040842 2367620000.0 2083760.0 2029880.0 1813680.0 1666520.0 1716100.0 2074920.0 1912910.0 1779240.0 2492610.0 2115030.0 False True 2072541.2676875025 2097443.328711628 2069030.3792108367 1877501.261127856 1934635.1628783918 1931485.6642362997 1820375.2352741635 1912015.9235976513 1878339.664762785 1980046.9746317184 1.0467131811723749 1.0592896812974575 1.0449400472408839 0.9482104642881337 0.9770652856547644 0.9754746675116378 0.9193596205528138 0.965641698451765 0.9486338904217914 1.0 20.917103226530237 3.7629541787876577 7.582263112900527 0.959553329364223 1.05155832708397 0.794428888916171 0.020545317457180915 0.08581063155342264 21.612214763914576 0.0051081461116397634 0.009026207898871593 5793.675657289871 -3.7629541787876577 0.0920049977197469 HVEAVYIDIADR ddPTM_BT-474_Trastuzumab_2h_R1 4 HVEAVYIDIADR 12 0 F5GWE5;Q00169;I3L4H1;I3L2X8;I3L4C0;I3L459;I3NI10 F5GWE5 PITPNA Phosphatidylinositol transfer protein alpha isoform 0 ;;; 162.32 6.176100000000001e-05 1251230000.0 1293580.0 1553140.0 1534470.0 1559840.0 1470890.0 1723420.0 1551300.0 1312060.0 1813050.0 1520430.0 False True 1286615.5090102497 1604835.326007042 1750510.0381476646 1757315.584066001 1658199.122851931 1604284.0318943027 1476257.6924585102 1409972.579705683 1366248.1211253137 1423394.8556943887 0.9039062519181211 1.127470230475253 1.2298133797130355 1.2345945870436017 1.164960738911056 1.1270829211418423 1.0371385610624066 0.9905702371095351 0.9598518047606709 1.0 20.440904496355348 2.1082474134476192 2.30609196027858 0.9830077164645825 1.143773217045013 0.3743494596335116 0.08652147046730739 0.3261825246543736 3.397960557047532 0.045389733726880155 0.02739418629255512 128.30613223556898 -2.1082474134476192 0.1607655005804305 HVEDGNVTVQHAALSALR ddPTM_BT-474_Trastuzumab_2h_R1 1 HVEDGNVTVQHAALSALR 18 0 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3;H0Y8M2 P52306-4 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 0 148.06 4.1678e-08 363900000.0 74416.0 118260.0 120480.0 130430.0 87544.0 97968.0 92789.0 71805.0 137560.0 105430.0 False True 74015.3525243949 122196.21261032046 137442.53676906702 146942.4246267109 98692.20948605904 91195.70275186619 88300.44158159767 77163.45371840203 103660.18120956299 98701.36713683567 0.749891867473152 1.238039716723604 1.3925089464923228 1.4887577435781183 0.9999072186025151 0.9239558214572253 0.8946222746761089 0.7817870811396732 1.0502405814283464 1.0 16.59078244749225 3.0170856043977117 23.814509542209557 0.9086040410305368 1.2329257223731842 0.3313941286986082 0.1921438329956398 146.7982483550217 204609.9883646821 0.057390905475389574 0.06857604073326506 1040.1251661625902 -3.0170856043977117 0.3243216813426474 HVEEFSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HVEEFSPR 8 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 ;;; 187.0 0.00015686 537400000.0 737380.0 844130.0 765400.0 806010.0 773310.0 841020.0 845110.0 665700.0 900610.0 896890.0 False True 733410.0280106205 872226.3567626391 873161.667023937 908050.7833579329 871786.444732527 782882.2669481306 804228.8006662874 715377.9143561051 678666.7330557179 839649.7123338394 0.8734714217576262 1.0387978986359105 1.0399118277513009 1.0814638176126685 1.0382739753573693 0.9323915145186896 0.957814656341514 0.851995664201068 0.8082736444574453 1.0 19.6794280598548 2.286318491927403 1.7194051823873815 0.8779842772463617 1.0187835628081792 0.3400629897188181 0.07173011301982479 0.353832935749184 2.105926281648214 0.03603494855318349 0.023546152010595577 193.33856548288372 -2.286318491927403 0.14079928556181742 HVENDGYK ddPTM_BT-474_Trastuzumab_2h_R1 3 HVENDGYK 8 0 O15305;H3BRM0;H3BV55 O15305 PMM2 Phosphomannomutase 2;Phosphomannomutase 0 ;; 107.57 0.0039768 1527200000.0 1576370.0 1479660.0 1359400.0 1364100.0 1354990.0 1569110.0 1697890.0 1469900.0 2184290.0 1628700.0 False True 1567882.9990711713 1528909.5886266402 1550791.703883383 1536794.9201356773 1527539.9448450527 1460641.1189876355 1615756.5741303265 1579591.4020009628 1646000.9974864495 1524754.9715997784 1.0282852184611293 1.002724776835784 1.017076010748328 1.0078963169559412 1.001826505436708 0.9579513732984426 1.0596827714784027 1.035964093524909 1.0795183673081974 1.0 20.54014598927169 2.2047644434007805 24.99976388366226 1.0460891086053843 1.0034910397555652 0.38612334313756624 0.025347509804929547 182.46148449360712 134969.6116085881 0.009071404662627486 0.0067000416977773284 160.23760436266943 -2.2047644434007805 -0.04259806884981909 HVFAIFNTEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVFAIFNTEQR 11 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4 P50570-2 DNM2 Dynamin-2 0 ; 218.18 1.08e-11 1564070000.0 1190510.0 1308560.0 1281150.0 1216900.0 1139060.0 1244270.0 1303020.0 1064190.0 1669070.0 1269710.0 False True 1184100.426438097 1352114.6285587766 1461524.7840445754 1370959.4152284309 1284112.539262433 1158256.5435965245 1239987.9445802132 1143605.261647326 1257750.0628921564 1188676.0207465796 0.9961506800603172 1.137496344638588 1.229540058464901 1.153349938335059 1.080288082581082 0.9744089418654636 1.0431672911189087 0.9620832267896295 1.0581100661071576 1.0 20.18092412464916 2.967060797596783 3.873429129613113 1.0051236607313836 1.1360367981562405 0.47775642364309945 0.05986906691008018 0.18781833153111852 6.063313512184044 0.018911587582038716 0.021183148891553087 926.9595808886354 -2.967060797596783 0.13091313742485688 HVFEDPQR ddPTM_BT-474_Trastuzumab_2h_R1 5 HVFEDPQR 8 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;B4DSP0;A0A087WZG9;Q86TG7-2 A0A087WXK2;B4DSP0 PEG10 Retrotransposon-derived protein PEG10 0 ;;;; 118.33 0.0019065 1553130000.0 1868430.0 2070370.0 1890580.0 1955430.0 1713540.0 1938030.0 1977440.0 1616800.0 1896710.0 1895780.0 False True 1858370.5804820904 2139281.013884907 2156757.230784055 2202987.237505245 1931749.1620527043 1804058.547731904 1881783.6726456238 1737453.8259440456 1429291.2351118785 1774789.6973410868 1.0470934011315374 1.2053715530859153 1.215218475752488 1.2412666361573235 1.0884383456511875 1.0164914470906985 1.060285438587361 0.9789632138089509 0.805329914441796 1.0 20.759216652770707 2.3604359826522288 0.9791959216514503 0.9243553526560421 1.178782597780443 0.6306784289594658 0.07581483527355637 0.35528715770894953 0.6676420829605094 0.053086624094230345 0.033551203388921653 229.31685801225552 -2.3604359826522288 0.25442724512440085 HVFGESDELIGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVFGESDELIGQK 13 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3;U3KPS5 P60174 TPI1 Triosephosphate isomerase 0 ; 121.04 0.00025127 3575700000.0 5192100.0 5311700.0 4417800.0 4365100.0 4364000.0 6135700.0 5223500.0 4631300.0 7266600.0 5743200.0 False True 5164146.310496536 5488496.7235095445 5039787.839794032 4917721.212436219 4919729.532545491 5711553.500884214 4970819.349292228 4976911.123264888 5475843.797451372 5376664.0589991 0.9604740511643338 1.0207996377090487 0.9373447521532935 0.914641710635662 0.9150152359456376 1.0622857292570844 0.9245173763408937 0.9256503788691928 1.0184463335190659 1.0 22.358279902280902 HVGDLGNVTADK ddPTM_BT-474_Trastuzumab_2h_R1 3 HVGDLGNVTADK 12 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;; 180.24 1.9687e-05 2660630000.0 5742700.0 4912500.0 4121060.0 3774400.0 3635250.0 5170800.0 4691150.0 4483480.0 6073600.0 4672250.0 False True 5711781.9412739435 5076009.592831035 4701269.427104342 4252238.653002045 4098177.539685145 4813354.766753931 4464221.1525667105 4818060.044250133 4576842.662070378 4374063.004885527 1.3058298279869942 1.1604793042901946 1.07480606060163 0.9721484688840987 0.9369269567237059 1.1004310549202754 1.020611991089402 1.1015067773072067 1.0463595647704114 1.0 22.060542570730128 4.533757658528878 1.8787425811044725 1.033012645370783 1.3332783765360385 0.7587008327451189 0.04934006639380479 0.2775408756828707 1.3939904142519182 0.013971900285233237 0.1265342322510947 34178.86671617184 -4.533757658528878 0.30026573116525546 HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 1 HVGDLGNVTADKDGVADVS(1)IEDSVISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(1)IEDSVISLSGDHCIIGR;HVGDLGNVT(0.003)ADKDGVADVS(0.832)IEDS(0.05)VIS(0.058)LS(0.058)GDHCIIGR 276.81 2.0537999999999997e-76 1055570000.0 431636.0 420314.0 385741.0 361588.0 387266.0 548744.0 521163.0 387748.0 616439.0 494021.0 True False 429312.11973526835 434303.89740482124 440049.9798791233 407365.0037255474 436582.02959458344 510810.61888443143 495952.3546540025 416683.7247044486 464525.8683094051 462492.1568273433 0.9282581626471524 0.9390513784798188 0.9514755512781634 0.8808041341069145 0.9439771532332546 1.1044741220879262 1.0723476005651498 0.90095306169701 1.004397288585417 1.0 18.819069374331185 2.9779681615901867 24.841856174902368 1.0077935824905129 0.9258797349202591 0.40731358274304275 0.05278979477742918 867.7673639407553 978446.7376559286 0.01777291457301282 0.01900419681932305 950.5351067574642 -2.9779681615901867 -0.08191384757025377 HVGDLGNVTADKDGVADVSIEDSVISLS(ph)GDHCIIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 1 HVGDLGNVTADKDGVADVS(0.002)IEDS(0.001)VIS(0.061)LS(0.937)GDHCIIGR 66.233 0.0036714 40956000.0 16500.0 21871.0 18607.0 19075.0 14702.0 18535.0 19278.0 20879.0 22760.0 18258.0 True False 16411.165833322346 22598.963013701316 21226.703865056716 21489.893044196197 16574.21255441883 17253.71907669687 18345.44949088839 22437.097001413753 17151.102968374893 17092.758808539766 0.9601238756802157 1.32213665838487 1.241853588576443 1.2572512889762164 0.969662811022533 1.0094168688600864 1.0732877996103685 1.3126667995925787 1.0034133846085733 1.0 14.061097649482274 -4.999999837345417 0.16375767009013475 0.4624665659043717 1.1803161049737294 0.0799886641178087 0.1363168342103615 356.3678090811219 3.3115741581066156 62.31497394673843 0.564849041879272 1.0000003745260886e-05 4.999999837345417 0.7178495390693578 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR ddPTM_BT-474_Trastuzumab_2h_R1 6 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;;;; 353.55 3.005899999999999e-145 9660229000.0 1305792.7000000002 1363358.5999999999 1522043.1 1426792.2 1220956.5 1643311.3 1623807.8 1555698.2 2001976.8 1684289.3 False True 1298762.457190408 1408737.1668333232 1736333.538644212 1607423.9462277007 1376438.0730988479 1529713.0577697074 1545258.013165814 1671792.2993593912 1508616.4427547301 1576796.5148813818 0.8236715675948272 0.8934172250750432 1.101177940372878 1.0194238324712577 0.8729332289286508 0.97013980138381 0.9799983692138359 1.0602460644613714 0.9567603863382583 1.0 20.58856506210125 4.4508936949954325 11.020893466220926 0.9956588758932331 0.8410220023191729 0.48701266832711 0.058018920286835786 0.3673253216259486 152.86969055672338 0.014794949263774821 0.04088957713072142 28241.88595814385 -4.4508936949954325 -0.1546368735740602 HVGMAVAGLLADAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVGMAVAGLLADAR 14 0 P25788-2;P25788 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ; 181.98 1.5752000000000004e-06 2529100000.0 2253200.0 2683300.0 2655700.0 2423900.0 2350400.0 2665900.0 2744900.0 2343700.0 3227800.0 2616500.0 False True 2241069.0215540547 2772612.018410896 3029599.4762417935 2730765.4914719337 2649709.508087746 2481612.6078535826 2612118.7004637187 2518598.795067459 2432351.940304064 2449512.7299016477 0.9149040109883559 1.1319034943420039 1.236817200114505 1.1148198815776633 1.0817292254668693 1.013104597318514 1.0663829865332441 1.0282040033197073 0.9929942027293435 1.0 21.224063358523324 2.9169560751487618 3.4223750858581607 1.0262861839100792 1.1110335868508865 0.19183464120278204 0.07642320716788167 0.4114005635414576 9.212691317526376 0.024780260014799004 0.02716451651328677 825.9544077392051 -2.9169560751487618 0.08474740294080729 HVIADQEVMETNR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVIADQEVMETNR 13 0 Q9H307 Q9H307 PNN Pinin 0 ; 223.03 1.6472e-11 1591170000.0 1012900.0 1243280.0 1189360.0 1361660.0 1253370.0 1242220.0 1153640.0 1103560.0 1205750.0 1198390.0 False True 1007446.6589437686 1284661.823221369 1356811.5498975553 1534046.0163858533 1412979.2401939814 1156348.255271345 1097834.025867232 1185913.250964134 908609.0687222335 1121907.724206704 0.8979763996688138 1.1450690600510374 1.2093789182679446 1.3673548931758808 1.259443365712713 1.0306981851729327 0.9785421761344103 1.0570506159966837 0.8098786104398266 1.0 20.097522589919752 2.5774976886246312 4.752929738913205 0.9790260361060071 1.1858454482224623 0.39191340306026257 0.1260517760616938 0.2564282170132788 9.365365235114025 0.04406337834409037 0.04103433174688856 378.0051255008379 -2.5774976886246312 0.20681941211645516 HVIDFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVIDFFK 7 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 ; 99.139 0.010748 1158920000.0 2486100.0 2435700.0 2046330.0 2118570.0 2220300.0 2560300.0 2365400.0 2143740.0 3286600.0 2573800.0 False True 2472715.113831676 2516770.802088258 2334435.476980786 2386780.7447781265 2503042.0442508613 2383312.487297924 2250976.5652944986 2303716.764491147 2476661.468183696 2409537.8804589603 1.0262196472963032 1.0445035218159227 0.9688312003362781 0.9905553941005073 1.0388058492668688 0.9891160071091967 0.9341943048705009 0.956082402013262 1.027857452779265 1.0 21.20032505125732 2.4810805501223268 24.90878510729092 0.970938495903271 1.0119279426287018 0.19254193749995618 0.03155492964072578 225.9158836855533 1421300.5643351118 0.011087842958820048 0.009467139634527428 302.7474892428802 -2.4810805501223268 0.04098944672543081 HVINFDLPSDIEEYVHR ddPTM_BT-474_Trastuzumab_2h_R1 8 HVINFDLPSDIEEYVHR 17 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;;;;;;; 345.74 9.139599999999995e-88 7383235000.0 2390385.0 2968641.0 2559026.0 2823558.0 2828375.0 2782291.0 2842647.0 2148411.0 3258765.0 2496797.0 False True 2377515.432756741 3067450.4211036214 2919314.6173472656 3181020.1532940743 3188551.791157959 2589957.7719785236 2705137.304643914 2308736.3382300087 2455686.0309638083 2337449.2778445426 1.0171409729793774 1.312306731178459 1.2489317500995294 1.3608937671697514 1.36411592815321 1.1080273683486426 1.1573031039794077 0.987716122917965 1.050583665810407 1.0 21.156503628486547 2.2125570968327444 1.6724883386804217 1.0174412924334146 1.2637590202641267 0.502997764353974 0.10056680182561378 0.29525245378528375 1.6305810449940334 0.05455743566813086 0.032797769541060694 163.13873741431343 -2.2125570968327444 0.24631772783071204 HVKDEQIEHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 HVKDEQIEHWK 11 1 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 167.44 1.2411e-05 169420000.0 47937.0 42066.0 38562.0 38482.0 40216.0 51706.0 48612.0 40123.0 69855.0 50855.0 False True 47678.91251830136 43466.141380566 43991.19441308736 43353.817254351656 45337.26922109287 48131.685922831835 46260.451844126226 43117.18200046575 52640.17125904339 47609.390360843994 1.001460261451164 0.912974122355375 0.9240024726144699 0.9106148372361368 0.9522757774772976 1.010970431631853 0.9716665450556327 0.9056444889058519 1.1056678285537747 1.0 15.53895853482433 2.988519415073272 20.430931984968463 0.9833352977085483 0.9341888686630336 0.21262851519654236 0.052738682212765224 92.41392051345426 164464.74886653296 0.01578092459253477 0.017660607883257413 973.9113229231385 -2.988519415073272 -0.049146429045514695 HVLDTLIQLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVLDTLIQLAK 11 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 148.96 0.0029334 114560000.0 406610.0 419540.0 382289.0 390552.0 343314.0 464008.0 446760.0 410636.0 518740.0 438906.0 False True 404420.8569386178 433504.13528271427 436111.9682844445 439995.84315580147 387033.00291849754 431932.2191173432 425148.51201106433 441279.7434873571 390903.4777598771 410894.64331366826 0.9842446561901064 1.0550250346091428 1.0613717540034364 1.0708239942177051 0.9419275943761689 1.0511994404064677 1.034689838208757 1.0739486402856158 0.9513472227513798 1.0 18.648408997166328 HVLPTTSLGHPS(ph)LSAPALSSSSSSSSTSSPVLGAPSYPASTPGASPHHR ddPTM_BT-474_Trastuzumab_2h_R1 1 HVLPTTSLGHPSLSAPALSSSSSSSSTSSPVLGAPSYPASTPGASPHHR 49 0 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 HVLPT(0.093)T(0.093)S(0.093)LGHPS(0.361)LS(0.34)APALS(0.009)S(0.008)S(0.002)S(0.001)SSSSTSSPVLGAPSYPASTPGASPHHR 63.576 0.00053309 566580000.0 13993.0 19063.0 24777.0 29616.0 23265.0 31789.0 31174.0 13340.0 16287.0 27543.0 True False 13917.663242768449 19697.50043117315 28265.38623445529 33365.3825634031 26227.65984754143 29591.50125325691 29665.99452375529 14335.498539147435 12273.287084618714 25785.18215925134 0.5397543114805957 0.7639077478499015 1.0961871845576274 1.2939750573540973 1.017160153671101 1.147616529156065 1.1505055244727667 0.5559587848016839 0.4759821749102998 1.0 14.654254617032295 1.7196811999743062 8.730464905270944 0.6418216424263611 1.0131134639700379 0.27269039608614054 0.23936646813892676 0.13279415669826186 27.474788264386103 0.12040192379134021 0.06433360059200564 52.44223592499521 -1.7196811999743062 0.3712918215436768 HVLSVLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 HVLSVLSK 8 0 A0A2R8Y430;P48637;A0A2R8Y5T7;A0A2R8Y7I7 A0A2R8Y430 GSS Glutathione synthetase 0 116.25 0.0023075 390120000.0 484520.0 640540.0 745380.0 529870.0 307350.0 421870.0 558770.0 419050.0 1199400.0 528900.0 False True 481911.39815523295 661859.986685394 850323.0250408957 596951.4876712051 346489.20069382613 392707.1198751611 531740.160391311 450321.6388927834 903823.9411365922 495145.1491859288 0.9732729866132112 1.3366989210609497 1.7173207218911808 1.2056090797873245 0.6997729883115914 0.7931151512254806 1.0739076435779453 0.9094739989539632 1.8253716968096623 1.0 18.917491980062586 3.4741536643753586 24.99879975878987 1.0203319873708219 1.3617922358179952 0.13238060282258113 0.33106270046344083 152.59276826829552 1285422.4929280588 0.09161817081675298 0.1247075034757991 2979.570490364178 -3.4741536643753586 0.3414602484471734 HVLTGSADNSCR ddPTM_BT-474_Trastuzumab_2h_R1 6 HVLTGSADNSCR 12 0 Q13347;Q5TFK1 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 ;;;;; 239.48 3.5814e-16 3626270000.0 1812569.0 2221750.0 2017066.0 2135498.0 2157887.0 2171088.0 2054930.0 1913031.0 2327920.0 2089180.0 False True 1802810.329899347 2295699.605673766 2301051.3601480364 2405851.8278424577 2432681.1186516923 2021005.7967514214 1955525.185305074 2055791.0873945865 1754235.3085298447 1955846.7437630128 0.9217543939208516 1.1737625215239937 1.1764988067116426 1.2300819762665267 1.2437994574008693 1.0333150095712733 0.9998355911786216 1.0511002940032421 0.8969185924837488 1.0 20.899361897346726 2.569944860138693 6.058229260973143 1.0000152671430325 1.1561758352233815 0.41892253582535366 0.09062142670186407 0.24060302966911543 12.852807892431544 0.030094976532121533 0.028197945016891497 371.4880604100451 -2.569944860138693 0.15616056808034906 HVLVILTDMSSYAEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVLVILTDMSSYAEALR 17 0 P21281;P15313;C9JL73;C9JNS9 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform 0 ; 261.39 2.7398000000000003e-27 609370000.0 364910.0 453630.0 408420.0 438610.0 439400.0 387090.0 421210.0 345400.0 504930.0 424090.0 False True 362945.36510531255 468728.80032487394 465921.9859497211 494137.9810283034 495354.9854721551 360331.37941184745 400834.46312154224 371175.50190566137 380496.76721535745 397024.2131182837 0.9141643081531197 1.18060507353799 1.1735354433179392 1.2446041442844873 1.247669459707678 0.9075803628744816 1.0095970217366148 0.9348938670273963 0.9583716928166235 1.0 18.598867469413246 2.732398453389586 24.983928042636435 0.9601643867158697 1.1600266648732738 0.5190974800130124 0.09128320544361913 393.5296434196657 1595525.7272334045 0.02945776359894185 0.028436448004968338 540.0058359932602 -2.732398453389586 0.1998622781574041 HVLVTLGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVLVTLGEK 9 0 F8VPF3;H0YI43;P60660;F8W1R7;J3KND3;G3V1V0;B7Z6Z4;G3V1Y7;P60660-2;G8JLA2;F8VZU9;F8W180;F8VXL3 F8VPF3;P60660;P60660-2 MYL6 Myosin light polypeptide 6 0 ; 146.69 9.4175e-05 3296100000.0 8421700.0 8599000.0 8394500.0 7003600.0 5751600.0 8224000.0 8977200.0 6992800.0 13344000.0 8023500.0 False True 8376358.502938836 8885212.516794734 9576372.633698 7890255.041904706 6484032.167595925 7655494.237213644 8542938.539765704 7514638.244718909 10055550.000439141 7511433.360736057 1.1151478154254735 1.1828917451680698 1.2749061562278967 1.0504326754929139 0.8632216856891005 1.0191788796570607 1.1373246795240912 1.000426667432025 1.3386992225747154 1.0 22.840656803975918 3.712004541415042 22.959963963243126 1.0506655604737212 1.1901728667204694 0.20136541916801742 0.12022991297815495 392.06974816519363 338976.9888589103 0.03196998485776968 0.04955354218778733 5152.340323530686 -3.712004541415042 0.13950730624674823 HVMSDSSLDLPTVSGQHPPAAAGSGS(ph)PSATSILQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVMSDSSLDLPTVSGQHPPAAAGSGSPSATSILQK 35 0 Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-9 SYNRG Synergin gamma 1 HVMSDSSLDLPTVSGQHPPAAAGS(0.005)GS(0.96)PS(0.034)AT(0.001)SILQK;HVMSDSSLDLPTVSGQHPPAAAGS(0.207)GS(0.79)PS(0.003)ATSILQK 256.56 1.2815999999999996e-59 395150000.0 128734.0 167800.0 161341.0 174208.0 176474.0 197867.0 182739.0 134025.0 189961.0 183735.0 True False 128040.91044769193 173385.1215627579 184056.41039888823 196262.71493805127 198946.91785665278 184188.92001881739 173899.21643922885 144026.62606516 143147.65689698872 172008.87499655248 0.7443854885409733 1.0080010206812469 1.0700401964874033 1.141003421724518 1.1566084474457508 1.0708105615045098 1.0109897901646894 0.8373209002619585 0.8322108780715982 1.0 17.39212347880135 -1.340396981095729 5.716224491641933 1.0000015534411486 0.990843408288704 0.0 0.1314793373052202 2.818833182436834e-06 3.251025554524726e-07 0.13785651586113334 0.03248758043521265 0.04566705640852705 1.340396981095729 -0.009158145152444619 HVNEDSQEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 HVNEDSQEKK 10 1 P24928;P24928-2 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 61.344 0.059854 78231000.0 154500.0 154830.0 158860.0 134620.0 127550.0 142540.0 162120.0 152310.0 228090.0 173650.0 False True 153668.18916656388 159983.42295328845 181226.10716412668 151662.87819710028 143792.73645191948 132686.54530306824 154277.63624145804 163676.14561450866 171880.27574941254 162567.50833075528 0.9452577009048752 0.9841045396832353 1.1147744652357539 0.9329224502139213 0.8845109205916032 0.8161935104098903 0.9490065870208768 1.0068195501987873 1.0572855394923675 1.0 17.31067941540334 -0.9082506292002515 5.790690668069721 1.0000000166004301 0.9651580675948942 0.016448313014980065 0.07959749809051563 1.7857951460457656e-08 3.402931863099148e-09 0.08265008720165627 0.019480803086142626 0.12352343800553789 0.9082506292002515 -0.034841949005535944 HVPGGGNVQIQNK ddPTM_BT-474_Trastuzumab_2h_R1 1 HVPGGGNVQIQNK 13 0 E7EVA0;P27816-4;H0Y2V1;F8W9U4;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 0 96.103 0.004391 320830000.0 196960.0 235250.0 237280.0 249420.0 234790.0 301500.0 240920.0 204380.0 292060.0 243960.0 False True 195899.5892443134 243080.15403837216 270686.96152526786 280996.546426391 264689.11479064054 280658.01465465885 229265.77919622508 219631.87342061108 220085.726403496 228390.26393533594 0.8577405440530441 1.0643192483336126 1.1851948365097882 1.2303350483711926 1.1589334423886908 1.228852797044455 1.0038334176151091 0.9616516467742048 0.9636388286052718 1.0 17.801141625699774 2.0799462759449248 7.758902999582633 0.9737730626787652 1.1277185941717542 0.31087353942970886 0.1014431952848244 0.29069108684599987 24.362140674399456 0.04049565850792007 0.029844018942405924 120.21157186458849 -2.0799462759449248 0.15394553149298906 HVPVVYVDYPGPASLTQIYGTFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVPVVYVDYPGPASLTQIYGTFNR 24 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 246.22 7.332899999999998e-38 814630000.0 295481.0 315845.0 261681.0 283238.0 270737.0 323570.0 320560.0 297324.0 381360.0 359580.0 False True 293890.16312702524 326357.7098926653 298523.4102279732 319095.9017589533 305213.75216607907 301202.36750185105 305053.2881418809 319511.8266606804 287378.9379621907 336631.2965480734 0.8730327992099082 0.9694811897742225 0.88679636530866 0.947909196295966 0.9066707560938034 0.8947545002216903 0.9061940801998992 0.9491447466027622 0.853690494345201 1.0 18.36080978442547 -2.3829046618018337 2.41525340637829 1.7240814645130869 0.9139107606783714 0.3742594162551238 0.03463669501991983 2954442.4220843916 805267.9361359722 11953431.10234604 0.007702779712420021 0.004140905677905397 2.3829046618018337 -0.8101707038347155 HVQELRPIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVQELRPIAR 10 1 Q8TE77;Q8TE77-2;Q8TE77-3;E9PIT5;Q8TE77-5 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 ; 134.84 9.607e-05 430150000.0 177425.0 206406.0 181650.0 196242.0 193251.0 179005.0 165439.0 170744.0 213530.0 201068.0 False True 176469.76351377048 213276.098934938 207224.74106989562 221086.21707885456 217860.3693615828 166630.8056824454 157436.0835316465 183485.784300464 160908.3926554084 188235.6680970247 0.9374937560867074 1.133027024532919 1.1008792497449693 1.1745181947392525 1.1573809127890058 0.8852243964547505 0.8363775320758934 0.9747662924642294 0.8548241376468 1.0 17.522180499480278 2.7336315051850595 24.997210177752837 0.9080588324467898 1.1065734399589426 0.6096520586336959 0.07610168783119249 270.5404422029209 1371999.0965623953 0.02397651373009215 0.02326869074319572 541.5412027521372 -2.7336315051850595 0.19851460751215289 HVQGWPADHAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVQGWPADHAEK 12 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 0 ; 156.08 4.2147e-05 328430000.0 602670.0 585350.0 533480.0 537200.0 555060.0 583900.0 602330.0 443600.0 844260.0 580320.0 False True 599425.291682931 604833.0208984535 608589.3469087146 605209.4649196429 625743.6009016272 543536.3673527536 573192.9967759515 476703.6845551584 636203.4355044019 543283.4807630515 1.10333796794452 1.113291757093285 1.120205874940169 1.1139846624263545 1.1517810186732698 1.0004654781502778 1.0550532402915904 0.8774492533541043 1.1710340145274483 1.0 19.051345655104164 2.7298523452152668 24.455272324393043 1.0049004893959894 1.1197381187649778 0.3305884441073845 0.06911855018277371 481.6185655968065 1352516.5459750453 0.021715643364319945 0.02077606515944534 536.8492431963049 -2.7298523452152668 0.11483762936898834 HVQLVLGQLIDENYLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVQLVLGQLIDENYLDR 17 0 O94874;O94874-3;O94874-2 O94874 UFL1 E3 UFM1-protein ligase 1 0 ; 175.39 1.2348e-09 398160000.0 266342.0 343809.0 321840.0 355650.0 389110.0 351230.0 354750.0 300070.0 392850.0 344740.0 False True 264908.0442653779 355252.4747280704 367152.274516572 400675.2535343843 438660.8520643389 326950.2968064868 337589.38722339744 322462.74712458544 296037.38142030255 322738.398053237 0.8208135315267948 1.1007443702731339 1.137615718275979 1.2414861570586693 1.359183954281077 1.0130505039953597 1.046015563254146 0.999145899805185 0.9172673075345376 1.0 18.300005708243763 2.514608505113784 24.80856232230562 0.9979514123118963 1.1415806076097537 0.21427569763330212 0.1306647932318095 831.2102789184642 550082.7096065908 0.04442528290351549 0.04187393208203573 327.0457464754783 -2.514608505113784 0.14362919529785734 HVSDDMK ddPTM_BT-474_Trastuzumab_2h_R1 5 HVSDDMK 7 0 Q01518-2;Q01518;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 ;;;; 182.13 0.00066183 3893739000.0 3114221.0 4153739.0 4262814.0 4348916.0 4133060.0 4500586.0 5367530.0 4536527.0 5584339.0 4802719.0 False True 3097454.3801584765 4291993.691626745 4862981.15815649 4899488.319695595 4659380.692434106 4189471.0830598776 5107882.06794419 4875065.680757339 4208153.4797588615 4496205.361605397 0.688904116037198 0.9545813294645116 1.0815745205241545 1.0896940699225985 1.0362917877866784 0.9317792996812765 1.136042875523904 1.0842622364154353 0.9359344472327026 1.0 22.100276500657817 4.69855445989459 2.741610112018411 1.0449426019664512 0.6380133933795795 0.7281270210144164 0.06361575451734067 0.19362889049092344 2.0905479428984433 0.015803249826447114 0.17025177053866905 49952.18155880699 -4.69855445989459 -0.40692920858687165 HVSSETDESCKK ddPTM_BT-474_Trastuzumab_2h_R1 3 HVSSETDESCKK 12 1 Q96P16;A0A0C4DGQ6;Q96P16-3 Q96P16 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A 0 ;; 272.97 6.0914999999999995e-28 253259000.0 211330.0 263065.0 269288.0 272717.0 299998.0 365547.0 368409.0 361934.0 431044.0 357700.0 False True 210192.2227609704 271820.9594988496 307201.40970674396 307242.9442376958 338200.96707254375 340277.59629507974 350587.6492109497 388943.3529436123 324818.9818936815 334871.27975762275 0.6276806506461405 0.8117177432940547 0.9173716238940944 0.9174956552263182 1.009943185684156 1.0161444616611195 1.0469325690298146 1.161471217314087 0.96998160645124 1.0 18.353247123016473 5.345546517407072 0.5249362881224988 1.0670437780591724 1.7423885949033083e-19 0.8537629006255326 0.052721403881738106 2.5867748071060688 0.34026759347056956 0.029208010236274104 1.9381702584463416 221588.14273003888 -5.345546517407072 -1.0670437780591724 HVTDDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 HVTDDQK 7 0 P40123;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;B7Z385 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 0 ; 139.28 0.0027038 204396000.0 206094.0 253530.0 223468.0 246625.0 243371.0 151884.0 249230.0 226227.0 313150.0 296390.0 False True 204984.4128031959 261968.59278787838 254930.35198132353 277847.69971296936 274362.8542770689 141384.61657647853 237173.79274894227 243109.20749742922 235978.37849501753 277474.13644775446 0.7387514217628438 0.9441189587671873 0.9187535647284528 1.0013462994064863 0.9887871272958395 0.5095416040806376 0.8547599995634176 0.876150875212127 0.8504517989173014 1.0 18.08199377758422 4.760354430593254 22.764064035130744 0.8741963610166337 0.7387509411975614 0.08824251804155248 0.13635164657082158 4514.6906672186105 4715423.479954024 0.03315969647497628 1.3535334684240448 57590.97493504917 -4.760354430593254 -0.13544541981907232 HVTDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 HVTDYK 6 0 O95456;O95456-2 O95456 PSMG1 Proteasome assembly chaperone 1 0 100.27 0.037849 178760000.0 361490.0 412460.0 352170.0 358890.0 347860.0 356300.0 430450.0 365630.0 527450.0 453880.0 False True 359543.7780053151 426188.48176266503 401752.47488348605 404325.4372021792 392157.9090722441 331669.81963998347 409627.48902131425 392915.16723152006 397467.0149678978 424912.9898137819 0.846158593934455 1.003001772079131 0.9454935116470645 0.9515487803264729 0.9229134398647291 0.7805593794280983 0.9640267509845567 0.9246955886279568 0.9354080117486822 1.0 18.69680792270903 -2.0909160223792176 5.326424004567988 1.2386633885595597 0.9217420407587662 0.13993849503182998 0.05973773549807824 0.0707878064822692 0.001208267724996096 0.024183617356388395 0.013263435185907028 0.008111178850017714 2.0909160223792176 -0.3169213478007935 HVTENRDDVFLDGTGWEGGDEWIR ddPTM_BT-474_Trastuzumab_2h_R1 2 HVTENRDDVFLDGTGWEGGDEWIR 24 1 H7C0I1;B8ZZW5;Q8NBF6-2;Q8NBF6 H7C0I1 AVL9 Late secretory pathway protein AVL9 homolog 0 ; 120.85 7.8959e-05 248525000.0 58302.0 90182.0 74713.0 75819.0 75469.0 79000.0 84062.0 73710.0 72468.0 71634.0 False True 57988.108509961115 93183.65335382975 85231.9409829625 85417.67762610281 85079.52981019147 73538.91594599684 79995.59991197518 79210.6144917959 54609.23242144955 67062.25679104713 0.8646906812372974 1.3895096558437003 1.27093755953559 1.2737071746966044 1.268664877701367 1.0965768148114925 1.1928557692477577 1.1811504456016249 0.814306512105628 1.0 16.033213413329342 1.2862094165279294 8.14587471032103 0.907944290113239 1.202955185653637 0.40183369516074596 0.1386651630611099 0.19648819271694815 29.8614706665832 0.08931174595003366 0.03215085636383528 19.329001355758617 -1.2862094165279294 0.29501089554039794 HVTLPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 7 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;A0A0A0MSW0;X6RE05 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 HVTLPS(0.5)S(0.5)PR;HVTLPS(0.5)S(0.5)PR;HVTLPS(0.686)S(0.314)PR;HVTLPS(0.67)S(0.33)PR;HVTLPS(0.686)S(0.314)PR;HVTLPS(0.686)S(0.314)PR;HVTLPS(0.723)S(0.277)PR 130.56 0.0002304 14329800000.0 3237830.0 4181430.0 3856910.0 3814730.0 3813870.0 4126860.0 3944820.0 3362670.0 4195590.0 3848500.0 True False 3220397.8830367294 4320606.369822187 4399929.403137305 4297674.426866925 4299543.737921459 3841579.8817835 3753993.9859241764 3613609.5106922705 3161643.062525658 3602885.4351333873 0.8938385471914132 1.1992072597396448 1.2212237891972852 1.1928423771009569 1.1933612143185672 1.066250912205671 1.0419409813360314 1.0029765241643012 0.8775308345069835 1.0 21.780721346874966 2.0596642803798604 1.407336878390893 0.9502065807197169 1.1482216763070687 0.399727258548092 0.0942966856218669 0.4101060622694982 1.5242916820459536 0.06297767920374546 0.031313374318477166 114.7266415307818 -2.0596642803798604 0.19801509558735186 HVTLPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;A0A0A0MSW0;X6RE05 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 HVTLPS(0.401)S(0.599)PR 110.31 0.0014869000000000002 4247700000.0 581030.0 714950.0 737710.0 731050.0 768390.0 721490.0 703530.0 608830.0 756080.0 693000.0 True False 577901.7990385011 738746.6785535975 841573.1557097322 823600.8550437551 866239.911895652 671615.0945047765 669497.5661544086 654263.9861760966 569754.2149529392 648772.1466928497 0.8907623454311133 1.1386843321178286 1.2971783082854218 1.2694762856915236 1.335198985208221 1.0352095075726817 1.0319456061225931 1.0084649741997123 0.8782038776746064 1.0 19.307352357045822 2.5527587481549667 6.956238178583351 0.9908468713153447 1.194445693389501 0.3992600881419436 0.12089136090307696 0.2807082038250135 22.10412652145015 0.04156253946212414 0.038982949438253776 357.0744271675597 -2.5527587481549667 0.20359882207415625 HVVFGK ddPTM_BT-474_Trastuzumab_2h_R1 8 HVVFGK 6 0 C9JQD4;O43447;O43447-2;H0YEL5;P62937;P23284;P45877;P62937-2 C9JQD4;P62937;P23284;P45877;P62937-2 PPIH;PPIA;PPIB;PPIC Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase B;Peptidyl-prolyl cis-trans isomerase C 0 ;;;;;;; 112.58 0.026876 56033937000.0 50380555.0 51714907.0 48661544.0 44596193.0 39286858.0 50310771.0 52264103.0 45593977.0 62787003.0 47719196.0 False True 50109311.689685896 53436206.41717353 55512666.421477295 50242066.46124926 44289806.49484895 46832905.819586 49735888.669627935 48996431.085264064 47313987.41338589 44673716.05682093 1.121673236807777 1.1961442014182904 1.2426247762973244 1.124644889566516 0.9914063660725317 1.0483324413849695 1.1133143391601537 1.0967619309516368 1.0591012252754344 1.0 25.41292293035406 3.4772321918255877 24.997733772934836 1.0626253631783689 1.1870617167590067 0.6421501290239304 0.04515624518486341 2.6029097685142144 586576.8596242535 0.012967076682438183 0.017744244054155905 3000.7664242634446 -3.4772321918255877 0.12443635358063787 HVVLPVDDDSDLNVVASFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 HVVLPVDDDSDLNVVASFDR 20 0 Q15291;Q15291-2 Q15291 RBBP5 Retinoblastoma-binding protein 5 0 225.9 4.7861000000000005e-25 216640000.0 156720.0 184560.0 181880.0 171930.0 176500.0 168460.0 193680.0 153890.0 203780.0 179830.0 False True 155876.2369332289 190702.96803112398 207487.12307069995 193696.3203716199 198976.22880253842 156814.75671218516 184310.95847054973 165374.0532375863 153561.14951210166 168353.09543979104 0.9258887490368463 1.1327559349767111 1.2324520825036127 1.1505361387364124 1.1818982495257968 0.9314634595968424 1.0947880583310436 0.982304796983848 0.9121373688493926 1.0 17.361130722092305 2.7413982467232225 24.997090261548713 0.9922236177916259 1.1325743135239705 0.3901071349300069 0.08731204657902415 273.846724419953 2412360.4484560746 0.027647438967651608 0.028160541816759956 551.3130170464209 -2.7413982467232225 0.1403506957323446 HVVRPPPRS(ph)PEPDTLPLAAGSDHPLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HVVRPPPRSPEPDTLPLAAGSDHPLPR 27 2 H3BVB1;H3BME1;H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2 H3BVB1 FBXL19 F-box/LRR-repeat protein 19 1 HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(0.999)PEPDT(0.001)LPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR 188.36 4.0752e-18 1951520000.0 189571.0 247177.0 222081.0 292126.0 289353.0 282456.0 280120.0 222985.0 259305.0 262223.0 True False 188550.37079931799 255404.13702334845 253348.0744373437 329109.1216476467 326200.3894204024 262930.4815499048 266569.5254376827 239625.27299488708 195402.75725898295 245487.70363959504 0.7680644203513028 1.0403948272631687 1.0320194074131248 1.340633835293102 1.3287850453776826 1.0710535707153699 1.0858773025513255 0.9761192493237271 0.7959777795871084 1.0 17.90529123688936 1.6228755534305965 2.95176673266186 0.8944571038846998 1.1096909782521558 0.20109461445206056 0.15887181064551847 0.3402449364355821 6.950495469862829 0.11051978043191696 0.045487756371668006 41.96387197829208 -1.6228755534305965 0.215233874367456 HWDQDDDFEFTGSHLTVR ddPTM_BT-474_Trastuzumab_2h_R1 4 HWDQDDDFEFTGSHLTVR 18 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 ;;; 318.1 1.1640999999999993e-61 2702960000.0 496759.0 571649.0 521268.0 693128.0 593652.0 605032.0 632294.0 476936.0 650519.0 542894.0 False True 494084.50473911397 590675.9913958816 594658.0034573213 780877.9337319853 669250.0633489217 563207.5619321314 601707.5236223566 512527.38615193556 490207.308958009 508246.04012506275 0.9721364570150628 1.1621851323239736 1.1700199441022607 1.5364171524874777 1.3167836254744674 1.1081395967070289 1.1838902344901616 1.0084237666186624 0.9645078766130376 1.0 18.95516754414442 1.8407941574040154 1.6139935393051779 0.973190170075876 1.230519652058491 0.33967572851462813 0.13804004089448085 0.4402624191093044 2.173115148426778 0.10582110707294912 0.04532323466590125 69.30972207987253 -1.8407941574040154 0.25732948198261485 HWDQNER ddPTM_BT-474_Trastuzumab_2h_R1 2 HWDQNER 7 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 ; 111.95 0.0064645 434830000.0 57940.0 76977.0 76160.0 82152.0 74669.0 76251.0 63405.0 65055.0 74696.0 70596.0 False True 57628.057477739145 79539.1329114208 86882.66600541296 92552.43477676561 84177.65455216302 70979.94784554701 60337.85791937846 69909.73444259641 56288.17167512 66090.50283972363 0.8719567108982844 1.203488088210064 1.3146013764808613 1.4003893267572034 1.2736724784240576 1.0739810531882439 0.9129580700226183 1.0577879035378928 0.8516832109996907 1.0 16.012155351880985 2.5300351624975677 3.9885259595605578 0.9701035045404747 1.2270084641428924 0.4291800187838345 0.13892483694950616 0.2275432972312092 7.417488913790919 0.0497014605320963 0.04499093229194822 338.8715916458841 -2.5300351624975677 0.25690495960241777 HWELTAEGEEIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HWELTAEGEEIAR 13 0 K7ER00;Q9Y285;Q9Y285-2;K7ER16;K7EK06 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 161.87 4.141399999999999e-05 174270000.0 690750.0 810840.0 890640.0 991230.0 776120.0 1003000.0 926020.0 914740.0 1054800.0 1003800.0 False True 687031.07874954 837828.31923687 1016034.3704183425 1116719.6163668975 874954.2815763522 933664.9708080357 881224.8748600708 983002.5437556019 794858.6735958628 939736.624603584 0.7310889676555444 0.8915565247766069 1.0811905632037528 1.1883325467260273 0.9310632986614102 0.993538983544342 0.9377360121851209 1.0460404734893345 0.8458313242086993 1.0 19.841896950780757 4.5570780565523785 3.357118166902148 1.0065242089558568 0.7353559298687944 0.47506006921032395 0.08819849751166321 0.22162949113315839 4.371177385526089 0.021822830213097184 0.11721632481477492 36064.345631396776 -4.5570780565523785 -0.2711682790870624 HWILPQDYDHAQAEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 HWILPQDYDHAQAEAR 16 0 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ;; 165.02 4.1486e-09 5886110000.0 2367320.0 2791080.0 2558450.0 2826430.0 2960780.0 2539280.0 2753290.0 2045880.0 3050910.0 2246570.0 False True 2354574.612153976 2883979.4105565087 2918657.521553947 3184255.748199602 3337817.783082039 2363745.5504221655 2620102.8441108023 2198553.9543681364 2299054.1105995034 2103191.979214657 1.1195243398718109 1.3712392587353825 1.3877275828352051 1.5140109793441776 1.587024777608936 1.1238848254379519 1.2457744561621817 1.04534154565818 1.0931261308147353 1.0 21.004149114505502 2.6500200393195588 8.667449254953102 1.1104253992449882 1.4004190414636177 0.5702925692641213 0.12759629546903237 0.27941601735652855 25.28243494351318 0.0430089074940645 0.040524669299038946 446.7042036073273 -2.6500200393195588 0.28999364221862955 HWMLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 HWMLDK 6 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 0 ;; 116.35 0.023648 4832410000.0 10855500.0 9679310.0 7791600.0 7795360.0 6008920.0 9467000.0 7225230.0 7085950.0 13837200.0 9446400.0 False True 10797055.194159422 10001479.982083553 8888589.554198733 8782251.776723731 6774120.344340795 8812568.572920918 6875718.021841038 7614739.570725021 10427207.468980538 8843522.664530076 1.2208998160274576 1.1309384689200668 1.0050960337162262 0.9930716649766622 0.7659979627248182 0.9964998007260942 0.7774863346501524 0.8610527568687641 1.1790785035020448 1.0 23.076189726081644 4.245922559002987 1.4200738177616883 0.913358117387356 1.2373425825397992 0.40008866078533023 0.115191556709149 0.51109999942417 1.6694924991502529 0.0323906043903852 0.18425694732877754 17616.61888570067 -4.245922559002987 0.3239844651524433 HWPFMVVNDAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 HWPFMVVNDAGR 12 0 P11142;E9PKE3;E9PNE6;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 162.68 6.2015e-05 2556200000.0 1572280.0 1781050.0 1690280.0 1432110.0 1135410.0 1458100.0 1493190.0 1182320.0 2159600.0 1410760.0 False True 1563815.0191767295 1840331.172582541 1928256.7318228637 1613414.9791624548 1279997.7333976796 1357304.9789982047 1420958.6951602683 1270550.722099309 1627395.5171574026 1320724.088987598 1.1840588297102033 1.3934259153198667 1.4599996682887568 1.221613956022578 0.9691636156790802 1.0276976018803805 1.0758936760587938 0.9620107126790204 1.2321994659799715 1.0 20.332897675556843 3.4357943931676322 4.654108392544379 1.0398623959142004 1.3505009131583514 0.6661367188846914 0.09656928969132499 0.10754217388524692 5.2881320119921025 0.026316909871897925 0.03696301899234303 2727.686116202355 -3.4357943931676322 0.31063851724415104 HWPFMVVNDAGRPK ddPTM_BT-474_Trastuzumab_2h_R1 5 HWPFMVVNDAGRPK 14 1 P11142;E9PKE3;E9PNE6;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;; 198.14 1.3498e-08 20794300000.0 7567920.0 7568050.0 7437080.0 6682710.0 6667400.0 7536600.0 7878800.0 7092370.0 11819040.0 8003330.0 False True 7527175.159594951 7819947.969267162 8484156.219741823 7528740.400806309 7516453.869224053 7015612.581248107 7497672.344061186 7621638.663725126 8906395.959022045 7492550.627404464 1.0046211942918137 1.043696380330781 1.1323455311346846 1.0048301006161344 1.0031902676415907 0.9363450352391445 1.0006835745143967 1.0172288507265488 1.1887001372331545 1.0 22.83702549643254 -1.6817776389421737 8.486754874421148 0.9999358397402662 1.0322063338537513 0.021224550650156826 0.06885486082688504 8.369563902810786e-05 3.138269209933303e-06 0.06675417888578782 0.01570285125341379 0.020807617753826172 1.6817776389421737 0.03227049411348504 HWPTFISDIVGASR ddPTM_BT-474_Trastuzumab_2h_R1 2 HWPTFISDIVGASR 14 0 O14980;C9JKM9 O14980 XPO1 Exportin-1 0 ; 270.79 6.1007e-33 243760000.0 372468.0 422690.0 391489.0 374800.0 392320.0 404459.0 438590.0 392870.0 401710.0 395174.0 False True 370462.6736730854 436758.981128499 446607.24831661134 422249.64157089026 442279.6265371785 376499.7013240757 417373.7261234947 422187.9543534374 302713.9531382198 369953.6569945169 1.0013758930853764 1.1805775476763898 1.2071978202481468 1.141358204163254 1.1955000800106528 1.0176942279277315 1.1281784035173914 1.1411914610691216 0.8182483060106804 1.0 18.496985034336184 1.2517778827357136 24.999915866002528 0.9091241663548286 1.1308001420378155 0.562416984490206 0.07667284874369122 131.83640003352937 249365.92793509175 0.049478432294493446 0.017834783961507117 17.855741202868273 -1.2517778827357136 0.22167597568298691 HWVAPGGPYSAETPGVPS(ph)PIAALK ddPTM_BT-474_Trastuzumab_2h_R1 2 HWVAPGGPYSAETPGVPSPIAALK 24 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 HWVAPGGPYSAETPGVPS(1)PIAALK;HWVAPGGPYSAETPGVPS(1)PIAALK 152.81 5.6481e-08 2749100000.0 2389400.0 2270400.0 2164610.0 1929780.0 2113900.0 2633300.0 2704700.0 2281100.0 3258200.0 2604600.0 True False 2376535.7358872965 2345968.89151422 2469368.2728725956 2174089.950135199 2383092.634933068 2451266.1691214386 2573863.3280426282 2451327.2651910987 2455260.2676431965 2438372.198089753 0.974640269335871 0.9621045110964098 1.0127117897780844 0.8916152964007729 0.9773293169927088 1.0052879421122776 1.0555662216207273 1.0053129982008058 1.006925960510325 1.0 21.217486927995285 2.7493266232326503 3.75995357617725 1.0182997970424343 0.9614581394251817 0.4013136581800719 0.03144541130507378 0.22211179152302887 7.058411035759091 0.010081104910241607 0.01016788201792616 561.4700864624626 -2.7493266232326503 -0.05684165761725268 HY(ph)HIKET(ph)NDNPKRY(ph)YVAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HYHIKETNDNPKRYYVAEK 19 3 Q08881 Q08881 ITK Tyrosine-protein kinase ITK/TSK 3 HY(0.997)HIKET(0.928)NDNPKRY(0.538)Y(0.538)VAEK 54.223 0.054321 632530000.0 339980.0 154500.0 155560.0 124130.0 162660.0 256420.0 187470.0 259350.0 424280.0 271590.0 True False 338149.5854553288 159642.43910277795 177461.49584824115 139844.84527266424 183373.78683864544 238694.28894775317 178401.35989505376 278704.01395261544 319721.8790607251 254256.89368010286 1.3299524766505517 0.6278785081974394 0.697961393611286 0.5500139770000185 0.7212146116650033 0.9387918081311494 0.7016579071382509 1.0961512583539665 1.2574757538845258 1.0 17.955927364913965 1.6539484641929383 5.099978282755179 1.1428839710566208 0.7788610188813937 0.321754528122291 0.2132787934732096 0.16104641950666782 9.258345946695908 0.11299274926470987 0.05419078451555572 45.07632112892148 -1.6539484641929383 -0.36402295217522707 HYASEEIKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 HYASEEIKEK 10 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 152.07 1.1226e-05 128330000.0 212850.0 194210.0 174470.0 179970.0 195370.0 230700.0 274120.0 202340.0 338140.0 207160.0 False True 211704.0392498581 200674.1624475757 199033.85947957463 202754.1835472603 220249.21145128575 214752.25200938567 260859.76835990866 217439.63826170095 254809.9278438617 193938.8714414012 1.09160189329979 1.03472893781487 1.0262711028496054 1.045454075505037 1.1356630561699141 1.1073192826857985 1.345061804377508 1.1211761553815194 1.313867230174394 1.0 17.565242468264735 2.878931485161667 1.8005059210804997 1.1982920780580106 1.047298097739583 0.2860921275210794 0.09462466912653933 0.38340294228044614 2.4811027754284747 0.031704412281471916 0.03436069205103962 756.7135055386647 -2.878931485161667 -0.1509939803184277 HYCDSEKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HYCDSEKPR 9 1 Q9UGI8-2;Q9UGI8;H7BYK1 Q9UGI8-2 TES Testin 0 ; 179.51 2.9875e-05 933990000.0 1040270.0 999350.0 896090.0 851090.0 963410.0 1036270.0 970950.0 918200.0 1354760.0 1015180.0 False True 1034669.3019048629 1032612.7606301667 1022251.6830460938 958837.9067357756 1086094.5529215496 964635.0940171924 923981.4391108048 986720.7465251256 1020897.5508539352 950390.343260674 1.0886782565098863 1.0865143653368758 1.0756124473433433 1.0088885198960662 1.142787866715155 1.0149883159667283 0.9722125710376397 1.0382268228229323 1.0741876304754523 1.0 19.858160651694266 2.6160314364032327 18.9294396847522 1.019583786036688 1.0768368871771816 0.3748825220999048 0.0389627403406182 3.4468053347000094 518.0988617355032 0.012498269579452409 0.01178342158764209 413.07740151301726 -2.6160314364032327 0.057253101140493534 HYCESLRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 HYCESLRPR 9 1 Q9NZU5;B4DEY6;Q9NZU5-2 Q9NZU5 LMCD1 LIM and cysteine-rich domains protein 1 0 ; 153.24 4.7194e-05 429830000.0 29475.0 38316.0 46407.0 58908.0 42008.0 32288.0 45359.0 25015.5 34470.0 41456.0 False True 29316.30987498036 39591.32489748888 52940.70222312495 66365.74676002668 47357.46979907673 30056.00655777656 43164.811881793015 26882.283636135144 25975.33037433579 38810.24258773274 0.7553755895420955 1.0201256745043645 1.3640909897290519 1.7100059761286772 1.2202312235493633 0.7744349056781406 1.1122015479345826 0.6926595105754937 0.6692905955333078 1.0 15.244149830426617 2.747507529332841 21.293223670217184 0.8414283694663673 1.2390952758321356 0.32734849477334305 0.25968902689182927 104.58326570972909 248901.38672102633 0.0860571678003032 0.08970179254334112 559.1232209664299 -2.747507529332841 0.3976669063657683 HYDDFFER ddPTM_BT-474_Trastuzumab_2h_R1 2 HYDDFFER 8 0 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 0 ; 219.56 6.3951e-06 375460000.0 83427.0 130511.0 120151.0 125543.0 119152.0 107054.0 111870.0 111017.0 144225.0 112601.0 False True 82977.83830161106 134854.97973943452 137067.21642878637 141436.7309277862 134325.3009307654 99653.60895800946 106458.42071509913 119301.65227290352 108682.68126598721 105414.70777743375 0.7871561763165483 1.2792804968369231 1.3002665312906982 1.341717241453699 1.274255782356023 0.9453482446530334 1.009901018175462 1.1317363087965848 1.0310011150953742 1.0 16.685716644611553 2.745396921699908 24.937897576964883 1.0387862415402327 1.2149607213361913 0.23525493504817774 0.1528998660276673 787.2566401837036 2871805.2113708532 0.04785565109264966 0.049759589774553824 556.412555980169 -2.745396921699908 0.17617447979595857 HYEDFPK ddPTM_BT-474_Trastuzumab_2h_R1 3 HYEDFPK 7 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ;; 91.626 0.016266 662320000.0 1114430.0 1028190.0 911330.0 880530.0 866820.0 1445820.0 1025360.0 844250.0 1437670.0 1050230.0 False True 1108430.0327048139 1062412.6825960209 1039637.3425776387 992005.0077172254 977204.3889553355 1345873.866494191 975759.4195444194 907252.2220146349 1083375.492291016 983203.4222528614 1.1273659220642405 1.0805624335212987 1.0573980104701706 1.008951947547331 0.9938984820823954 1.3688661329212275 0.9924288275040934 0.922751285726614 1.10188336184655 1.0 19.907130411769273 2.059995436050178 24.99999994939337 0.9891042874302103 1.100551295641056 0.1754447213342435 0.10582035036787985 116.8799017768656 48702.77487680853 0.040031873006662035 0.029565494682628778 114.81415557484078 -2.059995436050178 0.11144700821084563 HYEDGYPGGSDNYGS(ph)LSR ddPTM_BT-474_Trastuzumab_2h_R1 1 HYEDGYPGGSDNYGSLSR 18 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 HYEDGYPGGSDNYGS(0.995)LS(0.005)R 127.3 1.6584000000000002e-05 520160000.0 624820.0 270510.0 245930.0 285470.0 213800.0 345760.0 267350.0 251330.0 629410.0 345090.0 True False 621456.0385440275 279513.7618232522 280554.8063381197 321610.4727301014 241026.16270811783 321858.42503149185 254417.25912382003 270085.5208278805 474300.33916190057 323066.06075358705 1.9236190799318662 0.8651907327289523 0.8684131217116859 0.995494457015725 0.7460584443500436 0.9962619542291806 0.7875084697240058 0.8360071008321839 1.4681218387828885 1.0 18.301469672720923 4.740782001061116 24.880932928703693 0.9284316577011058 1.9236194487385028 0.692974628082599 0.19358439860603446 97.91378329048544 1096620.6211843651 0.04382990674595344 0.29172324723876747 55053.12817449004 -4.740782001061116 0.995187791037397 HYEDGYPGGSDNYGSLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 HYEDGYPGGSDNYGSLSR 18 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 0 ;; 212.76 1.5617e-16 3790120000.0 1432760.0 1888810.0 1943850.0 1824750.0 1923120.0 2063780.0 2040650.0 1715890.0 2151460.0 1962850.0 False True 1425046.1793546008 1951677.899040245 2217527.183752915 2055763.1629041696 2168017.9327747226 1921115.7462155644 1941935.9634599756 1843938.4249128697 1621261.5110869908 1837579.2325195677 0.7755018962641798 1.0620918350085142 1.2067654795556149 1.1187344341530474 1.179822831259406 1.0454600880428198 1.0567903299588997 1.0034606357542377 0.8822811459748725 1.0 20.80937502656496 1.5890151554480674 2.7286947519961133 0.9406176352829275 1.0759864323734831 0.1504194363890402 0.1135080763205149 0.40589330874811674 6.89792489115795 0.08075971804163617 0.03123302550349373 38.81639113972836 -1.5890151554480674 0.1353687970905556 HYEELQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 HYEELQAR 8 0 O15020;O15020-2 O15020 SPTBN2 Spectrin beta chain, non-erythrocytic 2 0 122.52 0.0013870999999999998 142720000.0 17899.0 32954.0 28049.0 33430.0 33781.0 25052.0 21885.0 22935.0 25760.0 25006.0 False True 17802.63377276585 34050.85396888632 31998.05539372148 37662.234572344896 38082.81011432609 23320.214206064742 20826.338941181246 24646.5261615702 19411.793166315358 23410.095671286308 0.760468219470017 1.4545371555508613 1.3668485529928331 1.6088031036344534 1.626768666350929 0.996160568223059 0.8896306633520438 1.0528161229089055 0.8292060587400728 1.0 14.514843209950177 2.6300050981962335 7.1700491305127345 0.9556981207989732 1.3815886375618656 0.4393381251470079 0.23138139314366468 0.24807914625226707 14.505902093137676 0.07579532379553643 0.07135087629100088 426.58452646103035 -2.6300050981962335 0.42589051676289236 HYELYR ddPTM_BT-474_Trastuzumab_2h_R1 6 HYELYR 6 0 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;H0Y961;B1AMS2;Q14141-2;Q14141-4;Q14141;E7EW69;E7EX04;B5ME97;Q9P0V9;Q9P0V9-2;Q9P0V9-3;A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599-2;Q92599-4;Q92599;Q92599-3 D6RGI3;B1AMS2;E7EW69;A0A087X142 SEPT11;SEPT6;SEPT10;SEPT8 Septin-11;Septin-6;Septin-10;Septin-8 0 ;;;;; 150.82 0.010463 4225360000.0 608689.0 746209.0 716108.0 653887.0 480594.0 628720.0 667681.0 489873.0 860081.0 607046.0 False True 605411.8860557062 771046.1154721333 816929.7818776823 736669.027155455 541794.7971961878 585258.0662476859 635382.7192408879 526429.8107846912 648125.5620449401 568303.8045617716 1.0652962045935084 1.3567498744209527 1.4374877931841936 1.2962591860941572 0.953354161712809 1.0298330955200767 1.1180335485011261 0.9263175902730933 1.1404561377953828 1.0 19.11630284811222 3.2487117076248726 24.681488399595978 1.0239391387104637 1.3044013065219895 0.5848893221871854 0.10734986886626315 116.04819710981856 282159.0511454303 0.029533969322375245 0.03952905252128203 1773.0121332798865 -3.2487117076248726 0.2804621678115258 HYEMQQQQFQHLYQEWER ddPTM_BT-474_Trastuzumab_2h_R1 1 HYEMQQQQFQHLYQEWER 18 0 P49750;F8VU51 P49750 YLPM1 YLP motif-containing protein 1 0 171.35 7.7983e-12 286310000.0 86890.0 64074.0 41330.0 65781.0 64525.0 86575.0 74123.0 59104.0 110880.0 59144.0 False True 86422.1938943866 66206.66435644914 47148.90475320005 74108.86785532214 72741.87628036142 80590.27402562888 70537.3873126424 63514.6406040308 83555.10971587914 55369.379284274095 1.5608301016105497 1.195727046469763 0.8515339229491993 1.3384449819247006 1.3137563978619755 1.4555025732159141 1.2739421720892634 1.1471076870473444 1.5090490591721388 1.0 15.756800728246022 -1.0251131697029077 3.9939418806875855 0.9999661213718709 1.2742035889781431 0.16462972105219864 0.194120969381342 5749283.368077208 2214074.8001220725 1678.016248418984 0.0452315494989412 0.09438149022421854 1.0251131697029077 0.2742374676062722 HYEVEILDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HYEVEILDAK 10 0 Q9NZ01;M0R3C3;Q9NZ01-2 Q9NZ01 TECR Very-long-chain enoyl-CoA reductase 0 ; 132.78 0.004234399999999999 273980000.0 525970.0 619280.0 633460.0 495530.0 696970.0 980180.0 638970.0 538980.0 893450.0 694410.0 False True 523138.2359607607 639892.3604373352 722645.6618669758 558264.0471921652 785724.998235158 912422.4636955339 608060.57999756 579201.4244849841 673271.2191166325 650092.1592856882 0.8047139601492461 0.9843102263230488 1.1116049494597942 0.8587460088821524 1.2086363248843075 1.4035278701070484 0.9353451988494802 0.8909527921724241 1.035655036751117 1.0 19.31028472845439 4.684596642311709 3.04717722591872 1.048104784036468 0.7801176825556885 0.19631525936972616 0.1524145119869008 0.5854485539408419 8.517558194504648 0.040449017583264905 0.35233375251171883 48372.289380151095 -4.684596642311709 -0.2679871014807794 HYFQNTQGLIFVVDSNDR ddPTM_BT-474_Trastuzumab_2h_R1 7 HYFQNTQGLIFVVDSNDR 18 0 P61204;F5H423;F5H0C7;P84077;P84085;C9J1Z8;P18085;C9JPM4;C9JAK5 P61204;P84077;P84085;P18085 ARF3;ARF1;ARF5;ARF4 ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 ;;;;;; 332.86 5.8211e-75 12260300000.0 2971043.0 3357636.0 3128343.0 3251385.0 3153545.0 3297161.0 3358580.0 2814113.0 3516725.0 3144910.0 False True 2955047.234601906 3469392.88452618 3568786.502355192 3663010.0076279836 3555130.2632243684 3069236.0207521357 3196112.6543784556 3024116.401836271 2650075.2454507113 2944199.1513070883 1.0036845616540586 1.17838254351304 1.2121416789250876 1.2441447807638204 1.2075033245105227 1.0424688898471888 1.0855626573221209 1.0271439690123214 0.9001005398273416 1.0 21.489443830693844 2.0392185121299162 1.1570974397900289 0.9627898053018217 1.171116188825015 0.5512054752558774 0.07281508658329035 0.37217264828783075 0.9240779944533152 0.0558944028210932 0.026762456319683332 109.45069210039456 -2.0392185121299162 0.20832638352319333 HYFQNTQGLIFVVDSNDRER ddPTM_BT-474_Trastuzumab_2h_R1 7 HYFQNTQGLIFVVDSNDRER 20 1 P61204;F5H423;F5H0C7;P84077;P84085;C9J1Z8;P18085;C9JPM4;C9JAK5 P61204;P84077;P84085;P18085 ARF3;ARF1;ARF5;ARF4 ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 ;;;;;; 323.47 5.021899999999997e-67 4520730000.0 599867.0 1003866.0 828499.0 848437.0 859026.0 958133.0 1039366.0 756794.0 982928.0 949970.0 False True 596637.3827234886 1037279.0729601886 945144.4577575983 955849.0372077957 968417.8692539929 891899.5209124787 989087.8958163031 813269.8112020652 740698.5649604037 889342.1012897642 0.6708750005855093 1.1663442801773125 1.0627456592765674 1.0747821741729984 1.0889149044552704 1.0028756308950242 1.1121568341157841 0.9144622862480305 0.83286123965818 1.0 19.76237895861679 1.6206576327425386 7.10823714132422 0.9024122636828595 1.035548077183683 0.12037057620644465 0.1328759495076912 0.20895788049545447 22.91064658037046 0.06522480014870695 0.03209769590037519 41.75011083400253 -1.6206576327425386 0.13313581350082337 HYGDQVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 HYGDQVDR 8 0 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-4;Q9BQ52-2;Q9BQ52-3 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 169.44 0.00030101 398360000.0 42045.0 46217.0 38017.0 47171.0 37392.0 38979.0 35772.0 27318.0 51545.0 34958.0 False True 41818.63439163865 47755.30490623354 43369.46315031229 53142.84376344842 42153.649560252255 36284.473476696345 34041.57169768955 29356.607877993232 38842.42541761357 32726.950510950443 1.2778041870306898 1.4592042387284023 1.3251910878711677 1.623825102362251 1.2880408624123911 1.1087031608568465 1.0401693761934596 0.8970162945114764 1.1868635730242234 1.0 14.998191558232339 2.7504543808275868 2.5182355661999485 1.0153992973687174 1.4196006926997802 0.7205645314350693 0.11061449221462748 0.14168859349276886 1.7798909981117383 0.037243122139968 0.037380134970997944 562.9299829823909 -2.7504543808275868 0.4042013953310628 HYGEHVCTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 HYGEHVCTAK 10 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 ; 131.82 0.00013881 408690000.0 561540.0 560270.0 570170.0 508360.0 536720.0 673590.0 567980.0 238750.0 797630.0 515180.0 False True 558516.7310329595 578918.2482596333 650444.9799935173 572718.3238766751 605068.1106113223 627026.3087603048 540504.6375056952 256566.73734793466 601064.7741944151 482300.77133221185 1.1580257885348677 1.2003261920161241 1.348629358806243 1.1874712999000847 1.2545451854451786 1.3000732033422462 1.1206796041663225 0.5319641862467805 1.2462446877995927 1.0 18.87957359180651 1.9858912942516258 23.810153563210054 0.8621296535722268 1.2399557987012528 0.3821645543099046 0.1738494687955057 273.0401142260186 460787.70957657835 0.06599075560142766 0.04451506548264559 96.80355225423075 -1.9858912942516258 0.377826145129026 HYGFQLYQSDPSGNYGGWK ddPTM_BT-474_Trastuzumab_2h_R1 2 HYGFQLYQSDPSGNYGGWK 19 0 P25789;H0YN18;P25789-2;H0YMZ1;H0YL69;H0YLC2;H0YMI6;H0YMA1;H0YKT8;H0YMV3;H0YKS0 P25789 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type 0 ; 287.21 2.6023999999999997e-40 2628500000.0 2402300.0 2116480.0 2161340.0 2048970.0 2152430.0 2392300.0 2392700.0 2372300.0 2934200.0 2439400.0 False True 2389366.283720623 2186925.7573608225 2465637.885295943 2308369.391914375 2426529.202047866 2226925.9318684614 2276955.959998373 2549333.0722953132 2211105.726265627 2283715.4035245893 1.0462627173390242 0.9576174658127778 1.0796607499737412 1.0107955607567107 1.0625357250307388 0.9751328595636386 0.9970401550404293 1.116309443970462 0.968205461526905 1.0 21.122951442657914 HYGGLTGLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 HYGGLTGLNK 10 0 P18669;Q8N0Y7;P15259 P18669 PGAM1;PGAM4;PGAM2 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4;Phosphoglycerate mutase 2 0 ; 164.68 6.0829e-06 6456800000.0 6685500.0 7502200.0 7089500.0 6219500.0 5555400.0 8337200.0 8332700.0 6348400.0 9944800.0 7873700.0 False True 6649506.010828884 7751906.191824336 8087639.9769613305 7006888.062300304 6262847.260564436 7760868.987657791 7929615.466994786 6822149.844522007 7494037.293492747 7371193.724986283 0.9020935087201576 1.0516486855510994 1.0971954175544858 0.9505771146061343 0.8496381311123512 1.0528646074448726 1.075757301034649 0.9255149300169426 1.016665356126791 1.0 22.813466844229513 4.583328186247655 0.0037360178783766014 1.0414905758083253 0.9416348061435508 0.0007391884207195165 0.07775429345399379 7207895.975709048 4396.268159628797 57234.20307576371 60295.332589466656 38311.41444121733 -4.583328186247655 -0.0998557696647745 HYGPGWVSMANAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 HYGPGWVSMANAGK 14 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 136.82 1.6945e-05 0.0 1043600.0 1128200.0 1176500.0 984890.0 1047100.0 1154500.0 1322600.0 896260.0 1388500.0 1154100.0 False True 1037981.3735548601 1165751.4549886987 1342140.9736786797 1109576.9730169538 1180441.9783520577 1074692.132400675 1258620.7851773503 963143.4723160624 1046322.7799467719 1080444.3499252785 0.9606985992630208 1.078955575147688 1.2422120341242004 1.026963557256503 1.0925523174180094 0.9946760631169932 1.1649103308878372 0.8914327446690536 0.9684189472776952 1.0 20.043193335039017 1.7229998008676966 11.881299876587878 0.948704603065766 1.0814479422444814 0.34363309388322827 0.0802174499520797 0.10669646458674292 51.85740252070844 0.036938783598781076 0.020199989568113915 52.84450094730087 -1.7229998008676966 0.1327433391787154 HYLDFINHYANLFHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 HYLDFINHYANLFHEK 16 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8Y5T0 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 199.41 1.3276e-11 578840000.0 425090.0 514050.0 492880.0 383520.0 262510.0 387970.0 508980.0 188188.0 811200.0 399300.0 False True 422801.3626719394 531159.8435002131 562273.2198102402 432073.59267680824 295939.0924813284 361150.54708314466 484358.6929075822 202231.54415930144 611290.629523099 373816.3321420713 1.131040370144264 1.4209112813678308 1.5041430014260178 1.1558446101081423 0.7916697774693666 0.9661176252349699 1.2957130314025407 0.5409917298167756 1.6352699894630986 1.0 18.511970076654297 3.4811801538700244 22.899941975580827 0.9957902466355357 1.354098672496794 0.18410259314184918 0.2872325352786398 77.21799681397562 435659.2986587281 0.07572673731333707 0.1052649881922511 3028.169311630447 -3.4811801538700244 0.35830842586125833 HYLFYDGESVSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 HYLFYDGESVSGK 13 0 O75436;S4R3Q6;O75436-2;S4R2Y3 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ;; 211.26 2.3299e-08 2975880000.0 3315540.0 3474290.0 3096370.0 3047950.0 3008800.0 3561390.0 3619310.0 3410590.0 4552500.0 3441030.0 False True 3297689.5010311236 3589929.642397343 3532311.981869492 3433820.157486648 3391952.8454452017 3315199.491910299 3444230.1481931345 3665105.544425099 3430597.3753746385 3221420.519386004 1.023675574544256 1.1143933618084658 1.0965075688233163 1.0659335336142723 1.0529369962825283 1.0291110620175006 1.0691650243941444 1.1377296203240366 1.0649331109458826 1.0 21.61926556957717 -0.5623678068767273 6.227863220621845 0.9999999998564402 1.0769475463400062 0.28540739675967086 0.03392374625614129 0.0 0.0 0.03461539544409715 0.00815892695065834 0.27392532975017486 0.5623678068767273 0.07694754648356605 HYLILPSEEEGR ddPTM_BT-474_Trastuzumab_2h_R1 6 HYLILPSEEEGR 12 0 Q14451;Q14451-3;Q14451-4 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ;;;;; 179.19 2.1027e-05 2900100000.0 1668810.0 1985050.0 1753690.0 1835270.0 1826250.0 1924030.0 1931250.0 1670600.0 1915110.0 1772380.0 False True 1659825.312382221 2051121.1892619326 2000594.308653262 2067614.9938255271 2058812.1124681917 1791026.3347794483 1837828.059408559 1795268.6551349135 1443156.8016592471 1659265.190989139 1.0003375719542142 1.2361623689816552 1.2057110096190509 1.2461027960171684 1.2407975070222925 1.0794093340268065 1.1076156297312385 1.081966080458 0.8697565702556184 1.0 20.662113051850447 1.6916099589229467 1.2374364241307492 0.9444731236903429 1.1832544697111567 0.5268836676211668 0.08259066108999591 0.33358365235484894 0.9662494135830876 0.06884106320333636 0.02607974863372919 49.15978319890085 -1.6916099589229467 0.2387813460208138 HYNGEAYEDDEHHPR ddPTM_BT-474_Trastuzumab_2h_R1 4 HYNGEAYEDDEHHPR 15 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 ;;; 193.32 1.387e-11 2336410000.0 1093924.0 1227840.0 1080230.0 1398260.0 1175495.0 1117520.0 1094955.0 251629.0 1279470.0 614634.0 False True 1088034.4347303824 1268707.9121550457 1232316.9944725216 1575279.5726331724 1325187.3205452706 1040268.4727591191 1041987.8435157008 270406.83372617187 964161.7625196247 575407.5319053578 1.8908936265181537 2.2048858275350502 2.1416420991083087 2.737676316847851 2.3030413177894156 1.8078812234425545 1.8108693156402502 0.4699396840197218 1.67561547087675 1.0 19.134224580066306 2.102649437213638 2.253417571218211 1.0111624534732957 2.2401368754505873 0.645139362118569 0.36941836274220785 0.1724252754629479 1.70785987389705 0.1830047427301219 0.10897050523731316 126.662902932547 -2.102649437213638 1.2289744219772916 HYPCTLVGTWNTWYGEQDQAVHLWR ddPTM_BT-474_Trastuzumab_2h_R1 1 HYPCTLVGTWNTWYGEQDQAVHLWR 25 0 O75323;H7C333 O75323 GBAS Protein NipSnap homolog 2 0 263.32 1.9733e-45 444640000.0 39824.0 40493.0 52853.0 54087.0 48489.0 70267.0 44384.0 25360.0 58070.0 49591.0 False True 39609.59200886234 41840.785026464575 60294.2429934886 60934.40865433497 54663.78673318014 65409.60768072611 42236.97635665473 27252.491975470693 43759.426598134065 46426.05992300886 0.8531758257011108 0.9012348904010307 1.2987154863772241 1.312504415739483 1.1774375603665785 1.4088985321864231 0.9097687037560125 0.587008503858935 0.9425617136302965 1.0 15.50264722731301 2.014734380190374 20.648173866000636 0.7850736932267147 1.1610199124563017 0.35551901146097376 0.19393370716624592 28.051456173595525 39308.927648292694 0.07616654369632361 0.05619359499826094 103.45092546550177 -2.014734380190374 0.37594621922958693 HYPVFENPK ddPTM_BT-474_Trastuzumab_2h_R1 2 HYPVFENPK 9 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISU1;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 133.57 0.00027316 460970000.0 1301670.0 1310990.0 1178580.0 1125110.0 1051110.0 1345810.0 1416890.0 1211760.0 1818630.0 1289680.0 False True 1294661.953349132 1354625.509639809 1344513.8195989956 1267548.8106398734 1184962.6280829243 1252777.322395975 1348349.617654573 1302187.6843926029 1370453.004893481 1207371.5182494002 1.0722979081254929 1.1219624524553273 1.1135874909062304 1.0498415702879307 0.9814399380573702 1.0376071519497245 1.1167644732994702 1.0785310608292957 1.135071503823891 1.0 20.203438242984333 HYQEEGQGTEVVQGVLLGLVVEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 HYQEEGQGTEVVQGVLLGLVVEDR 24 0 A0A087WZK9;B3KS98;O15372;E5RGU4;E5RFH0;E5RFW7 A0A087WZK9 EIF3H Eukaryotic translation initiation factor 3 subunit H 0 ;;; 179.79 3.6911e-17 478391000.0 259484.0 264330.0 257179.0 266309.0 295256.0 278574.0 296010.0 248293.0 302810.0 284144.0 False True 258086.96697538288 273128.0642591406 293387.5677600587 300023.6920947229 332855.1014805798 259316.83507265968 281690.8654319882 266821.88446630706 228186.53294611632 266009.6866520828 0.9702164241595378 1.026759843585576 1.1029206171119015 1.1278675444895638 1.2512894010357034 0.9748398200694971 1.058949653214753 1.0030532640538259 0.8578128707191186 1.0 18.021119256368067 1.6493660188613322 1.8760363292947693 0.9299307503338693 1.082705065774363 0.31812602779680366 0.08342226289807167 0.3736559352415337 2.732649938258665 0.06580094194718272 0.024690055620040827 44.603200115518945 -1.6493660188613322 0.1527743154404938 HYQGEEKS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 5 HYQGEEKSD 9 1 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 1 HYQGEEKS(1)D;HYQGEEKS(1)D;HYQGEEKS(1)D;HYQGEEKS(1)D;HYQGEEKS(1)D 163.71 3.8037e-05 2059120000.0 3391710.0 3023650.0 2151720.0 2759730.0 2815490.0 2574150.0 3121160.0 2474050.0 4309300.0 2759650.0 True False 3373449.410214406 3124290.3624149757 2454663.4729144815 3109111.5350385047 3174025.962783336 2396205.0693973154 2970177.5668109357 2658676.173971343 3247330.7566615962 2583526.7743447707 1.3057536092576296 1.209312167166277 0.9501211666509741 1.2034369319927145 1.228563216105367 0.9274938015709306 1.1496600678985518 1.029087912063784 1.256937140697982 1.0 21.30091040451496 2.8151084186737747 24.99998771346399 1.0770287947121142 1.169690573896808 0.16527674832680161 0.11879966430626311 262.72743590634195 85803.2290886098 0.03590356685622882 0.03808147797530541 653.2936226168547 -2.8151084186737747 0.09266177918469376 HYTEAIK ddPTM_BT-474_Trastuzumab_2h_R1 4 HYTEAIK 7 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 141.78 0.0025335 1697910000.0 2983060.0 3282030.0 3335430.0 2999800.0 2682590.0 3317710.0 3651130.0 3178690.0 4788920.0 3551220.0 False True 2966999.5364091224 3391270.384520969 3805029.551922725 3379574.372423573 3024201.935543358 3088364.5167492847 3474510.893228925 3415899.9888607617 3608754.8342403346 3324578.0992475958 0.8924439275710205 1.0200603755671935 1.1445150146371543 1.016542331548302 0.9096498398481847 0.9289493056121106 1.0450982920254637 1.0274687153939424 1.0854775332416022 1.0 21.66473983843633 HYTEAIKR ddPTM_BT-474_Trastuzumab_2h_R1 6 HYTEAIKR 8 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;;;; 194.2 0.00010818 5189950000.0 3050888.0 3733932.0 3671182.0 3672152.0 3439402.0 4114891.0 4280900.0 3732252.0 5346763.0 4315899.0 False True 3034462.357993523 3858213.6694104457 4188052.515114024 4137046.06668577 3877389.4577671937 3830438.270581509 4073816.5123738996 4010771.5962316478 4029124.9016035628 4040454.63079297 0.7510200299905327 0.954895926811395 1.0365300189726636 1.0239060810525284 0.9596418750050972 0.9480216016754918 1.0082569623048538 0.9926535409319777 0.9971959271357581 1.0 21.946086203065747 4.721704505955674 3.5045458269015493 0.9942994550643477 0.7258986001694976 0.8934639905385207 0.0252070745015324 0.08279685191668808 1.8006009880051603 0.006501125695344635 0.05743073753516143 52687.12561407844 -4.721704505955674 -0.2684008548948501 HYYEVSCHDQGLCR ddPTM_BT-474_Trastuzumab_2h_R1 4 HYYEVSCHDQGLCR 14 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ;;; 220.21 2.7325e-12 3001590000.0 490019.0 771520.0 745900.0 850240.0 649950.0 663180.0 698930.0 547010.0 765900.0 695000.0 False True 487380.79215022904 797199.5768063122 850916.236520975 957880.2968229284 732717.2799445329 617335.9275577998 665120.0857281149 587830.6638604986 577154.2075341981 650644.5049805635 0.7490738620236075 1.2252459994726717 1.3078051532094228 1.472202238688764 1.126140733281719 0.948806795158043 1.0222480642451346 0.9034590461623259 0.8870499990642957 1.0 19.31150998251948 2.834666033122298 4.136769942051386 0.948391730657641 1.2091254251445596 0.2891999809714413 0.1750915013845282 0.2852232003616833 8.670752363164661 0.05661730421403231 0.06008295757064414 683.3859301708552 -2.834666033122298 0.2607336944869185 HYYFCMMTEAEQDKWQAVLQDCIR ddPTM_BT-474_Trastuzumab_2h_R1 1 HYYFCMMTEAEQDKWQAVLQDCIR 24 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 181.26 2.0102e-17 437140000.0 329210.0 324960.0 334100.0 320570.0 337640.0 426310.0 397100.0 326030.0 414270.0 371690.0 False True 327437.56993866974 335776.09715753153 381138.3759507419 361154.1291312174 380636.45265092974 396840.193125797 377890.75593068684 350360.01414679503 312178.70943359693 347968.42598018085 0.9409979339830089 0.9649613932979547 1.0953245969864238 1.0378933896484839 1.093882157781205 1.140448855403909 1.0859915087589305 1.006873003376319 0.8971466550570816 1.0 18.408596878934983 1.477903471566205 5.001480404193273 0.9481308094888964 1.05382423256833 0.30473299373858154 0.06175257442832713 0.2094965306296552 11.337186639349436 0.04138557198996582 0.01691531088094975 30.054082315282557 -1.477903471566205 0.10569342307943363 HYYTGTQGLIFVVDCADRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 HYYTGTQGLIFVVDCADRDR 20 1 P62330 P62330 ARF6 ADP-ribosylation factor 6 0 ;;; 263.92 9.5742e-37 1996070000.0 299137.0 369126.0 312820.0 324693.0 316663.0 302987.0 301032.0 252858.0 313447.0 328434.0 False True 297526.4796292448 381412.1357686207 356862.33691981685 365799.1005084763 356988.15604134987 282042.2218446807 286469.9321060851 271727.5479469071 236202.18682461392 307473.0609335061 0.9676505601041504 1.2404733429674497 1.1606296038955803 1.189694796018516 1.1610388076194806 0.9172908383855942 0.9316911577110064 0.8837442445264195 0.7682044928017119 1.0 18.230100489571136 2.7087800046287116 4.830875054685406 0.8925324190806383 1.1535621031113332 0.6715197924141345 0.08510313560179245 0.1097987799749482 6.765582160246984 0.02663879333828312 0.025821098313080635 511.42270461907214 -2.7087800046287116 0.26102968403069493 IAALQAFADQLIAAGHYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IAALQAFADQLIAAGHYAK 19 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 268.55 7.404899999999998e-32 358900000.0 482610.0 530970.0 459070.0 499610.0 480020.0 539880.0 579540.0 535520.0 677880.0 572420.0 False True 480011.6813830119 548643.0154718576 523703.06569202925 562860.5747738328 541147.7016985526 502559.36634082044 551505.4361422058 575483.2217154595 510825.5571266247 535887.6655265819 0.8957319084986509 1.0238022831384668 0.9772627723711841 1.0503331406606389 1.0098155574579273 0.9378073030417449 1.0291437396684198 1.0738877916698635 0.9532325335845707 1.0 19.03157108449904 4.742545664440911 24.58561747779752 1.0108679195199413 0.8957318520238706 0.4032545875980337 0.03992308688625727 321.6674001485121 1984416.403221242 0.00976656554193129 0.07508813007385401 55277.152674807534 -4.742545664440911 -0.11513606749607064 IAAPELHKGDS(ph)DS(ph)EEDEPTK ddPTM_BT-474_Trastuzumab_2h_R1 3 IAAPELHKGDSDSEEDEPTK 20 1 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(0.996)EEDEPT(0.004)K 180.26 7.3335e-17 2258870000.0 2639550.0 1636570.0 1563410.0 1357810.0 1509020.0 2331610.0 2283210.0 2327450.0 3776740.0 2219090.0 True False 2625338.9560815715 1691042.2431225418 1783524.5385966732 1529708.6067806033 1701184.7523377163 2170431.28871957 2172762.4095907877 2501136.1375516276 2846013.032723211 2077465.776341467 1.2637218797918972 0.8139928283683024 0.8585097087556164 0.7363339623695296 0.8188749830255194 1.0447494796000059 1.0458715779266137 1.203936144717757 1.3699446051694766 1.0 20.98639327991347 2.18594653919597 1.7203228536545052 1.2064236163869966 0.8875152173732429 0.3652209776764552 0.16065873550557136 0.35555256210529806 2.0669582580348624 0.08702837967026086 0.05140937523405082 153.44280860672202 -2.18594653919597 -0.3189083990137537 IAAPELHKGDS(ph)DS(ph)EEDEPTKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IAAPELHKGDSDSEEDEPTKK 21 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 IAAPELHKGDS(1)DS(1)EEDEPTKK;IAAPELHKGDS(1)DS(1)EEDEPTKK 144.26 6.9378e-08 714690000.0 1162130.0 632500.0 538530.0 467980.0 544570.0 896910.0 869700.0 891220.0 1572210.0 894410.0 True False 1155873.2212047814 653552.3801456757 614350.3430133279 527226.220016929 613917.7615807272 834908.7227990394 827629.2884233652 957727.3619234618 1184759.9120346524 837327.9880570747 1.380430652851883 0.7805213601687558 0.733703341791857 0.6296531676198929 0.7331867205409606 0.9971107316457332 0.9884170841390191 1.1437899790567854 1.4149293095812483 1.0 19.675433323085546 2.0054562980342103 1.6268923062724658 1.2113627258445196 0.8380815568461687 0.29236854881007457 0.21630869609165398 0.44581716779720576 2.2039847436442943 0.13989829549070745 0.06869202590767355 101.26428439747225 -2.0054562980342103 -0.37328116899835095 IAAPELHKGDS(ph)DSEEDEPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 IAAPELHKGDSDSEEDEPTK 20 1 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 IAAPELHKGDS(0.999)DS(0.001)EEDEPTK 174.4 2.0895e-12 244120000.0 644230.0 414810.0 353000.0 361020.0 378190.0 601250.0 614560.0 543460.0 911800.0 549110.0 True False 640761.5372606824 428616.7000920599 402699.331668996 406725.09498378576 426350.25479225005 559687.0026902608 584831.3849528148 584015.7448339638 687099.107494035 514065.32968327735 1.246459351101278 0.8337786568025051 0.7833621690011745 0.7911933979954934 0.829369790518513 1.0887468389184922 1.1376596537119852 1.1360730068954152 1.336598809177359 1.0 18.971592189538708 2.598273522464017 3.856846021970154 1.156283477771875 0.881710268924901 0.40968991260919163 0.14644473616038003 0.2272448899771516 5.93813228269305 0.04948540505137892 0.04599393323809791 396.52769223828926 -2.598273522464017 -0.2745732088469739 IACDEEFS(ph)DS(ph)EDEGEGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IACDEEFSDSEDEGEGGR 18 0 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 2 IACDEEFS(1)DS(1)EDEGEGGR;IACDEEFS(1)DS(1)EDEGEGGR 312.63 4.8715999999999995e-61 1272070000.0 1394390.0 1494300.0 1258310.0 1265150.0 1212290.0 1367270.0 1219260.0 1167520.0 1317920.0 1278360.0 True False 1386882.7591712927 1544036.8721765755 1435469.1105734115 1425317.8602812486 1366667.945694217 1272753.8431073832 1160279.7357744873 1254646.270946433 993136.2752232284 1196773.9703409397 1.1588510391617177 1.2901658211505944 1.1994488066651983 1.1909666282892173 1.1419599519739534 1.0634872370634851 0.9695061594997292 1.0483569178806642 0.8298444817782104 1.0 20.190719271597168 2.65791905451337 0.9472787740197874 0.9519330730299607 1.2283198342312047 0.7812638111114292 0.05960302514146993 0.24286577330485087 0.4563653252343932 0.03436667464826914 0.029260989489017935 454.9032656166151 -2.65791905451337 0.27638676120124406 IACDEEFS(ph)DS(ph)EDEGEGGRR ddPTM_BT-474_Trastuzumab_2h_R1 6 IACDEEFSDSEDEGEGGRR 19 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 2 IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR 157.47 3.8068000000000005e-09 20834900000.0 2597810.0 3040660.0 2500350.0 2861330.0 2715250.0 3176200.0 3035210.0 2702970.0 3572770.0 3044410.0 True False 2583823.679603827 3141866.5299822115 2852377.5465681986 3223574.0846212287 3061020.99295237 2956636.7699705744 2888385.2966718217 2904679.346803551 2692308.706165238 2850113.147349468 0.9065688083319488 1.1023655439448314 1.0007944944995733 1.13103372321168 1.073999814989465 1.0373752258643383 1.013428291209402 1.0191452748129766 0.9446322187836703 1.0 21.442587763647072 1.689977936649145 1.5893828742182114 0.9763975674670389 1.0474209187932637 0.14815040092142362 0.05953183642781813 0.6197078084574891 3.0926056546668392 0.04484778362999798 0.016982502643896964 48.97539378930956 -1.689977936649145 0.07102335132622484 IACDEEFS(ph)DSEDEGEGGRR ddPTM_BT-474_Trastuzumab_2h_R1 2 IACDEEFSDSEDEGEGGRR 19 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 1 IACDEEFS(1)DSEDEGEGGRR;IACDEEFS(0.991)DS(0.009)EDEGEGGRR 368.7 3.9008999999999996e-108 2113250000.0 1049850.0 1234200.0 1019610.0 1106380.0 1008930.0 1191140.0 1243760.0 1003470.0 1096340.0 1320320.0 True False 1044197.7242493001 1275279.6009103437 1163162.2253910056 1246447.594560303 1137411.255103372 1108799.2954419586 1183594.5771753981 1078354.0269174126 826161.6972033455 1236056.0472171784 0.8447818580720327 1.0317328277965 0.9410270901628742 1.0084070195413224 0.92019391650088 0.8970461314746025 0.9575573695384683 0.8724151541066348 0.6683853042613581 1.0 20.23731273102037 1.5599341815740537 4.770909035126675 0.8157877151019848 0.9454067413448053 0.19142423756608506 0.08990735195794676 0.19130987078503534 9.491242241659046 0.04813313286536539 0.021352234841220282 36.302303354301856 -1.5599341815740537 0.1296190262428205 IACEEEFS(ph)DS(ph)EEEGEGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IACEEEFSDSEEEGEGGR 18 0 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 IACEEEFS(1)DS(1)EEEGEGGR;IACEEEFS(1)DS(1)EEEGEGGR 193.3 1.9087e-14 624180000.0 695030.0 777920.0 651030.0 685660.0 655560.0 810180.0 785690.0 606480.0 760080.0 715470.0 True False 691288.0357050932 803812.5969374299 742689.3651457982 772464.4856976956 739041.6801914566 754174.1635585785 747683.1730727295 651738.6172430383 572768.4685501929 669808.0920553159 1.032068802847493 1.2000640279978094 1.108809185727878 1.153262396886513 1.1033633199678081 1.1259555871359872 1.1162647658950384 0.9730229075662088 0.8551232440214995 1.0 19.353388280008993 1.6592730244507816 3.4485074400034597 0.9236718965965255 1.1243655406187887 0.7158212082577233 0.05156126912768014 0.08838556906923337 2.476511565070029 0.028025634003973683 0.012495957953936935 45.63236991802305 -1.6592730244507816 0.2006936440222632 IACEEEFS(ph)DS(ph)EEEGEGGRK ddPTM_BT-474_Trastuzumab_2h_R1 2 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK 142.41 5.440100000000001e-07 3277700000.0 5878800.0 5229900.0 4144100.0 4251300.0 4394800.0 6465400.0 6122900.0 5475100.0 8800700.0 6567500.0 True False 5847149.193996085 5403974.059958686 4727553.25883708 4789514.14410439 4954451.729979584 6018462.115914538 5826711.935250562 5883679.763994461 6631885.408338184 6148356.527280366 0.9510101062051592 0.8789298466966186 0.7689133247008111 0.7789909584542197 0.8058172469336472 0.9788733117883641 0.9476860864195722 0.9569516240459496 1.0786435983197122 1.0 22.551769394929604 2.731047094851722 23.844922703362716 0.9833540197114952 0.8321010308193422 0.630697731227323 0.05931531718292128 221.79752403942328 703894.5658745803 0.020321681884442347 0.019523728110785038 538.3281556045071 -2.731047094851722 -0.151252988892153 IADDKYNDTFWK ddPTM_BT-474_Trastuzumab_2h_R1 4 IADDKYNDTFWK 12 1 P14625 P14625 HSP90B1 Endoplasmin 0 ;;; 200.13 1.4923e-07 10459170000.0 5980080.0 5667230.0 4967120.0 4367070.0 4990310.0 6631570.0 7078520.0 6522720.0 9472510.0 6009400.0 False True 5947883.913729348 5855860.324637118 5666447.32101899 4919940.614234228 5625796.398615274 6173145.174936637 6736104.945027657 7009478.488101027 7138136.835630972 5625874.94709382 1.0572371354969186 1.0408799306252092 1.0072117447164604 0.8745200809654933 0.9999860379977719 1.0972773538319622 1.1973435258292318 1.2459357084931189 1.2688047464187497 1.0 22.423646053862193 2.475612003192341 2.622538158196124 1.2041180370782043 0.9927428840946176 0.5097277529110515 0.08273238562234839 0.19827507970803532 2.768100683630009 0.030943947295435075 0.026215519092062198 298.95925541431535 -2.475612003192341 -0.21137515298358667 IADGYEQAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IADGYEQAAR 10 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 237.65 8.191000000000003e-12 981140000.0 806590.0 991580.0 867210.0 900220.0 807470.0 891630.0 933210.0 806870.0 1062920.0 970620.0 False True 802247.409060573 1024584.1408772325 989305.6300755537 1014187.7596983642 910296.5182503441 829993.7167712561 888067.0670916047 867082.7366028404 800977.6083982881 908674.2006104101 0.8828768424608688 1.1275594048878672 1.0887352468145115 1.1161181411523233 1.0017853677796114 0.9134117775256525 0.9773217578919239 0.954228408840451 0.8814794211833287 1.0 19.793403592380276 3.0038301793926667 6.286923987284701 0.9470004426037106 1.0616829694690113 0.34526555832877126 0.07016127004975257 0.15439065739980745 27.139023694975084 0.020142965587720482 0.023191280601769938 1008.8583187031904 -3.0038301793926667 0.11468252686530067 IADLGNACWVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 IADLGNACWVHK 12 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;A8MPP7;A8MPY5;E7ETV6;Q9UPE1-2;Q9UPE1-3;Q9UPE1-4;Q9UPE1;P78362;P78362-2;H7C521 H3BLV9;P78362 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 0 ; 159.64 6.3665e-05 1014520000.0 1131850.0 1324080.0 1106020.0 1063940.0 998250.0 1260160.0 1200080.0 1122710.0 1620870.0 1231290.0 False True 1125756.2453603556 1368151.2023767368 1261738.0023018217 1198634.6949117742 1125371.220408693 1173048.1052975627 1142027.5456492023 1206492.3212058651 1221428.307045246 1152708.0180395953 0.9766187340961882 1.1869017834226092 1.0945859511306715 1.0398424198959648 0.9762847163348496 1.017645480850007 0.9907344512025194 1.0466590865375782 1.0596163884784309 1.0 20.136595692658915 3.6453476032836036 4.03881118802056 1.0174118345809202 1.0961423624607531 0.25579155329910563 0.052884328567046224 0.2719086524537163 7.9849706801986216 0.013739347311503766 0.022190584374379325 4419.240156955359 -3.6453476032836036 0.07873052787983292 IADMGHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IADMGHLK 8 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 ; 93.429 0.011075 1375260000.0 2797970.0 3094960.0 3257520.0 2555020.0 1936240.0 2784680.0 3148880.0 2332410.0 4902880.0 3063950.0 False True 2782906.04040369 3197973.872657175 3716150.5011285837 2878485.2700278973 2182808.687006386 2592181.626031625 2996556.644510252 2506466.277937999 3694630.9192260993 2868406.0878204345 0.9701924885113768 1.114895790465695 1.295545465792924 1.0035138616705146 0.7609831454042822 0.9037010613798065 1.0446765739460526 0.8738184905480185 1.2880431870905258 1.0 21.45181785396783 3.4958377851735807 24.55027605488444 0.9597261091957626 1.129654720257527 0.1617084464154982 0.14826130000003152 922.9657702047118 1210641.493095276 0.039173144879857 0.05951970881502702 3132.1156185212344 -3.4958377851735807 0.16992861106176427 IADNHTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IADNHTPK 8 0 B8ZZN6;P63165;B8ZZ67;P63165-2 B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 0 66.692 0.061026 456000000.0 663920.0 677190.0 579460.0 589720.0 590620.0 746020.0 721480.0 638900.0 843330.0 703760.0 False True 660345.5284884466 699729.8597800004 661042.9312433897 664378.4915346458 665831.9561209935 694449.3933421853 686579.2560787502 686577.9622684638 635502.6215430408 658845.4342807501 1.0022768530062505 1.0620546540538496 1.0033353755650423 1.0083981112503815 1.0106041895059505 1.0540399268309468 1.0420945799347865 1.0420926161808934 0.9645701229406072 1.0 19.329580521837705 1.2422491702339296 24.99998449159029 0.9822850554995232 1.029356313305213 0.4092830402964196 0.02198148091821229 81.44657776038336 552053.4904480212 0.015998278882400983 0.005335567003272768 17.468240807499697 -1.2422491702339296 0.04707125780568988 IADPEHDHTGFLTEY(ph)VATR ddPTM_BT-474_Trastuzumab_2h_R1 6 IADPEHDHTGFLTEYVATR 19 0 P27361;E9PQW4;P27361-3;P27361-2;E9PJF0;B3KR49 P27361 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1 IADPEHDHTGFLTEY(1)VATR;IADPEHDHTGFLTEY(1)VATR;IADPEHDHTGFLT(0.003)EY(0.997)VATR;IADPEHDHTGFLT(0.055)EY(0.945)VATR;IADPEHDHTGFLTEY(1)VATR;IADPEHDHTGFLTEY(1)VATR 314.85 9.076999999999999e-62 12315300000.0 5218460.0 6934680.0 6266340.0 6764420.0 6060510.0 6424310.0 5962190.0 1530330.0 6748660.0 4615400.0 True False 5190364.391185418 7165496.631697412 7148586.20399631 7620794.878428398 6832280.025042909 5980212.570899078 5673776.091922394 1644530.9954582853 5085543.170410941 4320841.220557256 1.2012393249932984 1.6583568490335043 1.6544431602775633 1.763729442815663 1.5812383923151323 1.3840389557586692 1.3131183957717039 0.3806043572335184 1.1769798774866953 1.0 22.042880786013576 1.9523500210603182 5.66445187748603 0.791852865443127 1.5484679601849145 0.616367162255413 0.24102647988629605 0.11960438890051073 9.13509071116575 0.10409162341354014 0.06438508871491333 89.6086678590368 -1.9523500210603182 0.7566150947417875 IADPEHDHTGFLTEYVATR ddPTM_BT-474_Trastuzumab_2h_R1 4 IADPEHDHTGFLTEYVATR 19 0 P27361;E9PQW4;P27361-3;P27361-2;E9PJF0;B3KR49 P27361 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 0 ;;; 211.78 6.542899999999998e-17 1879400000.0 1048010.0 1143830.0 1037930.0 1150000.0 1099010.0 1215910.0 1250740.0 167326.0 1290160.0 773450.0 False True 1042367.6306048566 1181901.690090165 1184061.5221507126 1295589.8820878433 1238962.409157382 1131857.0036442662 1190236.927909208 179812.71578421185 972217.3552582847 724087.75881614 1.4395598018520488 1.6322630450520748 1.6352458769453784 1.7892719029059276 1.7110666408489565 1.5631489275482513 1.6437744091340625 0.2483300036423759 1.3426788996513745 1.0 19.465805035745383 1.765210194523552 24.99999999999975 0.796752187596538 1.6374615563113855 0.6313160510696224 0.26708349988873764 9.24270005627373 8676.078769534857 0.1142588131133982 0.06336795723199627 58.23850185482661 -1.765210194523552 0.8407093687148475 IADREDEYKK ddPTM_BT-474_Trastuzumab_2h_R1 4 IADREDEYKK 10 2 O75533;B4DGZ4;A0A494C1M2;O75533-2 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;; 143.96 1.8589e-05 4185510000.0 3722310.0 3067910.0 2688530.0 2696790.0 2660310.0 4008380.0 3811530.0 3658720.0 6092190.0 3726950.0 False True 3702269.4965475164 3170023.5297592417 3067051.6548783174 3038203.337491895 2999084.709607261 3731290.125311583 3627151.732441428 3931752.2650037166 4590851.40566362 3489092.8601975697 1.0610980116871627 0.9085523535133826 0.8790398472526311 0.8707717046315175 0.8595600145298047 1.0694155400324594 1.0395687010279344 1.1268694822817302 1.315772204871516 1.0 21.734420563865278 2.2836995992506965 1.517316173975168 1.1533626560910357 0.9133109747588267 0.5134138411545024 0.09452753186785653 0.30331579710458706 1.3893578375284592 0.05110923423402547 0.03202820097689784 192.17619895972274 -2.2836995992506965 -0.240051681332209 IAEGEHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IAEGEHPK 8 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 0 79.47399999999998 0.027994 0.0 212370.0 254090.0 281870.0 195060.0 296090.0 366240.0 288540.0 248390.0 385040.0 310930.0 False True 211226.6235165249 262547.23204935156 321554.8459420401 219754.57600004764 333795.3064370742 340922.69083622686 274582.21787015913 266926.12309886335 290152.05127166404 291086.1811994346 0.7256497805775439 0.9019570457364656 1.1046723160029717 0.7549467827518928 1.1467233005072743 1.1712087788964716 0.9433021407568366 0.9170003261542042 0.996790881917096 1.0 18.151086826132943 4.622402149170966 3.2783260386335353 0.9966564427906479 0.7169044895919499 0.3503420246010235 0.11552582069324989 0.3119240438811189 5.410354941521974 0.028520292466100175 0.182449791378382 41918.15403097538 -4.622402149170966 -0.27975195319869806 IAEIEAEMAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IAEIEAEMAR 10 0 Q9Y295;F8WEE0 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 0 88.49600000000002 0.028278 21310000.0 19852.0 25158.0 26310.0 23965.0 23392.0 27663.0 25496.0 24378.0 29502.0 25885.0 False True 19745.119037764543 25995.368821667842 30014.219309380445 26998.966542813196 26370.83254475344 25750.72192169761 24262.661075821667 26197.210148975748 22231.627406546406 24232.997138736562 0.8148030111472211 1.0727261127809122 1.2385681860789135 1.1141406235572577 1.0882200164419422 1.0626305022970086 1.0012241134233324 1.0810553064894883 0.9174113824743966 1.0 14.564685227994813 1.2473021102075166 24.982975171269477 0.9587056852744233 1.0662440144873317 0.1319490510483433 0.10178787580560614 317.0146274856321 906038.2174989736 0.07101394715823203 0.02505789392307948 17.672667648507694 -1.2473021102075166 0.1075383292129084 IAELLENVTLIHKPVSLQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAELLENVTLIHKPVSLQPR 20 1 Q14694;Q14694-3;Q14694-2;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 0 ; 167.63 8.0784e-12 530630000.0 337050.0 340710.0 302070.0 278170.0 312220.0 320280.0 353020.0 325540.0 375290.0 355570.0 False True 335235.3602497753 352050.3263864557 344598.830360492 313386.2934785876 351979.36632707436 298139.7974580242 335943.073932639 349833.44785862527 282804.8081283572 332877.2181812071 1.007084119728748 1.0575981387672237 1.0352130201139331 0.9414471053047274 1.057384966896319 0.8956449440638109 1.0092101699484972 1.0509383903472416 0.8495769391295738 1.0 18.344630611536584 3.7776242837969396 20.78529980024312 0.9810307454035483 1.0357286503083272 0.15659657228993507 0.06269586271159573 150.46667079276185 80058.62498769858 0.015607688126309527 0.02813453395798065 5992.724102684204 -3.7776242837969396 0.05469790490477888 IAESHLQSISNLNENQAS(ph)EEEDELGELR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAESHLQSISNLNENQASEEEDELGELR 28 0 Q9UD71;J3KSJ8;Q9UD71-2;J3KT77 Q9UD71 PPP1R1B Protein phosphatase 1 regulatory subunit 1B 1 IAESHLQSISNLNENQAS(1)EEEDELGELR;IAESHLQSISNLNENQAS(1)EEEDELGELR 263.45 4.7252e-54 536130000.0 92961.0 54554.0 56175.0 54916.0 49524.0 57770.0 61233.0 48761.0 43423.0 57002.0 True False 92460.50830493808 56369.79691141057 64083.951718146935 61868.35996933567 55830.58784825451 53776.49587595239 58270.92585722418 52399.79342334097 32721.98348838945 53364.08355813256 1.7326355507298377 1.056324650455277 1.2008817062947705 1.159363299136186 1.046220306349589 1.0077282750929388 1.091950277638448 0.9819299785455674 0.6131836491250434 1.0 15.703581449063915 7.999999999999999 0.6293907268094976 0.9704958330717197 53.18677983696682 0.6732676376703722 0.14982520259482812 121.85841908534438 0.8452702026562053 0.06026268057315625 8822.38626614627 99999999.99999979 -7.999999999999999 52.2162840038951 IAESNHIK ddPTM_BT-474_Trastuzumab_2h_R1 3 IAESNHIK 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ;; 101.25 0.0055261 1401990000.0 1635890.0 2021210.0 1963360.0 1657580.0 1727430.0 2327090.0 1984660.0 2013340.0 2396510.0 2251520.0 False True 1627082.5500044636 2088484.7530027556 2239784.0221689534 1867429.4580444954 1947407.9712202232 2166223.745680633 1888654.4136625456 2163585.6543333675 1805922.222088757 2107826.065976747 0.7719244847892556 0.9908240469713384 1.062603816473376 0.8859504530223874 0.9238940549479412 1.0277051701022708 0.8960200484034535 1.0264536003499807 0.8567700396341335 1.0 21.007324392605845 4.743241130613061 24.61280880017698 0.965322979896345 0.7719243864617898 0.43071118540453457 0.06599079140332012 351.48594919797614 1848234.6703833009 0.014798548168840258 0.11841068438114047 55365.74276486122 -4.743241130613061 -0.19339859343455512 IAEVDCTAER ddPTM_BT-474_Trastuzumab_2h_R1 1 IAEVDCTAER 10 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 104.89 0.006099800000000001 218110000.0 225210.0 254510.0 256270.0 281890.0 230390.0 245720.0 269060.0 214170.0 332720.0 217730.0 False True 223997.49438318337 262981.21149545634 292350.5884612288 317577.24509716686 259728.8008714836 228733.9547626627 256044.5398909858 230152.45293322406 250725.6142195823 203834.28499196877 1.0989196169427977 1.2901716289083458 1.4342562070593161 1.5580168228798195 1.2742154779394306 1.1221564359090768 1.2561406924309821 1.1291155113689155 1.2300463301817017 1.0 17.637037208118304 2.9951559680158146 24.95746960331105 1.1657874165579871 1.3562970553280955 0.3495062237709833 0.12665350086020935 249.48589927539297 1285413.9522452308 0.03806107397426149 0.04436020753333425 988.9081771187774 -2.9951559680158146 0.1905096387701084 IAGDYVSEEVWYR ddPTM_BT-474_Trastuzumab_2h_R1 4 IAGDYVSEEVWYR 13 0 O95782-2;O95782;O94973-3;O94973;O94973-2;A0A0G2JQM1;A0A0G2JS82 O95782-2;O94973-3 AP2A1;AP2A2 AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2 0 ;;; 265.04 6.3889e-24 1082970000.0 492024.0 522370.0 471144.0 534840.0 511950.0 596550.0 549540.0 516150.0 553080.0 563030.0 False True 489374.9974530051 539756.7696706672 537476.9799429396 602550.6891616189 577143.7979346154 555311.9026276517 522956.6507533355 554667.733956593 416780.84489230154 527096.9433657654 0.928434519707347 1.0240180226128097 1.0196928415309956 1.143149655382263 1.0949481024292742 1.0535289752995347 0.9921451022159374 1.0523068686658945 0.7907100394681803 1.0 19.007708800342545 1.2650538568851812 24.96737810262345 0.8953549578925534 1.0414590331317548 0.3892594293754751 0.07165957705240429 177.78053615665544 167541.7970038679 0.04672450352237165 0.017052192654754668 18.41000289871833 -1.2650538568851812 0.14610407523920144 IAGEASR ddPTM_BT-474_Trastuzumab_2h_R1 5 IAGEASR 7 0 Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053 Q16778;P58876 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S 0 ;;;; 180.49 0.0015951 18817390000.0 7791910.0 10441970.0 9058800.0 9303860.0 8461820.0 7399600.0 9358190.0 8440170.0 11308700.0 8736080.0 False True 7749959.222322576 10789524.659145841 10334200.299498882 10481727.722053735 9539382.61986345 6888083.068784788 8905498.597942563 9070018.34371485 8521822.413816402 8178535.895065618 0.9475973843922827 1.3192489215160772 1.2635758321650026 1.2816141980103932 1.1663924622032749 0.8422146894214401 1.0888866555339747 1.1090026943804323 1.041974079854305 1.0 22.963411167261018 2.982849142769866 24.694140003602023 1.033033900702472 1.2166837944070783 0.36860408848901294 0.11654005598880565 684.5055645426079 985566.3437040426 0.03496951774150454 0.03789603263225814 961.278309202539 -2.982849142769866 0.18364989370460627 IAGFDER ddPTM_BT-474_Trastuzumab_2h_R1 1 IAGFDER 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 76.847 0.092244 263980000.0 622440.0 691010.0 656710.0 721540.0 595680.0 669850.0 616940.0 611510.0 702620.0 661710.0 False True 619088.8521995848 714009.8501256348 749169.0597743534 812886.8900188381 671536.3171280235 623544.846157292 587096.2552603318 657143.9813848623 529468.71562564 619479.1012815672 0.9993700367273487 1.1525971556562669 1.2093532424653002 1.3122103527579094 1.0840338531820706 1.0065631671307613 0.9477256844432 1.0608008890459333 0.8546998833863558 1.0 19.240696086930186 2.883268117853645 3.4628503086940037 0.9821494484995311 1.1723181852217304 0.5175023725540252 0.08783016060125198 0.20962194114110524 4.636638384434678 0.028369173109970565 0.030643038381782093 764.3074940180833 -2.883268117853645 0.19016873672219925 IAHFLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAHFLDR 7 0 P60228;H0YBR5;E5RHS5;E5RIP5;E5RJ25;E5RII3 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 ; 111.65 0.0065316 1163680000.0 1271550.0 1619570.0 1618960.0 1488230.0 1176800.0 1392660.0 1459640.0 1252220.0 2031210.0 1424580.0 False True 1264704.1160824865 1673476.408399259 1846895.4957474193 1676639.7654083394 1326658.5045599302 1296388.6921690137 1389031.6368337134 1345667.0150443197 1530645.5123195427 1333662.0847557005 0.9482942722437477 1.2547979188489904 1.384830173143696 1.2571698517735588 0.9947486096547062 0.9720518465563827 1.0415169274967844 1.0090014782798735 1.1477011529497936 1.0 20.34696174079197 3.2385513959138157 24.999999999999982 1.0250859396021392 1.226778931793552 0.391995854990455 0.11143071818205239 0.2421815640600408 650181.3938861978 0.032165759578922204 0.040881775180056784 1732.0139911591425 -3.2385513959138157 0.2016929921914128 IAHIMGPPDR ddPTM_BT-474_Trastuzumab_2h_R1 7 IAHIMGPPDR 10 0 A0A087WTP3;Q92945 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ;;;;;; 122.26 0.00049332 4987130000.0 2128280.0 3023420.0 2753200.0 2927890.0 2766540.0 2721730.0 2687510.0 2163260.0 2869880.0 2568230.0 False True 2116821.5769541375 3124052.7070040177 3140826.628756605 3298560.573796673 3118842.47043272 2533583.211363267 2557504.874014807 2324693.446011703 2162636.5284217824 2404323.3626276767 0.8804229954496098 1.2993479810426793 1.3063245475117817 1.3719288449585616 1.297180952824976 1.0537614244176885 1.0637108609300034 0.966880529527049 0.8994782324363577 1.0 21.197199509585726 2.486944241233916 2.3075770701962166 0.9761028364579926 1.2457486663318897 0.4402622575979832 0.13232019977686987 0.27785532115258715 2.989180244771365 0.052446994687385555 0.04406594530855596 306.8627984088881 -2.486944241233916 0.2696458298738972 IAHLAQIEDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAHLAQIEDDR 11 0 A6NHR9;A6NHR9-2;J3KTL8;A6NHR9-3;A0A2R8YCU7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 0 ; 161.99 2.5656e-05 469980000.0 232126.0 259885.0 242523.0 247575.0 246096.0 234237.0 247213.0 220913.0 276284.0 245670.0 False True 230876.2594076229 268535.1151212003 276668.1303522948 278917.96961556346 277434.8668747284 218044.74752458805 235254.3627446307 237398.64983348447 208197.5102159265 229991.13027133147 1.0038485359641793 1.16758900573425 1.202951305234668 1.2127335923194547 1.2062850708521904 0.9480572023249344 1.0228845019679236 1.0322078488566668 0.9052414759225976 1.0 17.811218698387727 2.7388426674168596 24.999899920310735 0.9911121895992515 1.164638693722916 0.641720426566286 0.06586533347835646 17.113999886617954 1516975.9042136783 0.02121269432327272 0.02125192155894048 548.0783756881108 -2.7388426674168596 0.17352650412366455 IAILTCPFEPPKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IAILTCPFEPPKPK 14 1 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 136.27 1.645e-05 154650000.0 299430.0 235120.0 236480.0 190576.0 200113.0 268970.0 294590.0 246250.0 384180.0 305720.0 False True 297817.9021498005 242945.82706695847 269774.32847899245 214702.9020598023 225596.20438732262 250376.73698727586 280339.5562569154 264626.425432163 289503.9867482543 286208.68785994 1.0405620611193382 0.8488415529365315 0.9425791037168308 0.7501620711278687 0.7882227687571843 0.874804810641531 0.9794935239495709 0.9245925670909803 1.011513622849656 1.0 18.126707940149945 2.2643667419896905 7.53227868616372 0.9677724202075249 0.8663395697532001 0.29414779845194317 0.07815778231615385 0.24835805466599925 53.71033286536262 0.0281741791640483 0.023049072218800343 183.80898716764995 -2.2643667419896905 -0.10143285045432471 IAIVNHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IAIVNHDK 8 0 P61221;D6R9I9;D6RGF4 P61221 ABCE1 ATP-binding cassette sub-family E member 1 0 ; 110.41 0.0034316000000000004 832610000.0 764960.0 858740.0 840200.0 784310.0 828620.0 857140.0 838850.0 775520.0 1000520.0 950380.0 False True 760841.5403550459 887322.6417807087 958492.8568506816 883603.5655828849 934139.8453844731 797887.9292905291 798271.6207818101 833393.2404107657 753955.2522811267 889725.9347387459 0.8551414662071811 0.9972988390422238 1.0772900051880898 0.993118814550844 1.049918642260067 0.8967794442507921 0.8972106910834403 0.9366853408128185 0.847401680498966 1.0 19.76300148075844 2.7235081376278605 24.75812364422746 0.912320043188237 0.99922283224425 0.2664822024732314 0.06513876877403235 899.3914660518786 1479305.4529262423 0.020756836744448195 0.019640879079106135 529.0639104943735 -2.7235081376278605 0.08690278905601301 IAIWTTECENR ddPTM_BT-474_Trastuzumab_2h_R1 4 IAIWTTECENR 11 0 D6RBW1;P06730;P06730-3;P06730-2 D6RBW1 EIF4E Eukaryotic translation initiation factor 4E 0 ;;; 223.84 1.5465e-11 1419820000.0 516000.0 585600.0 519240.0 582670.0 477504.0 580296.0 614150.0 480120.0 586700.0 545420.0 False True 513221.91333299 605091.3419973243 592344.478685013 656435.9622574992 538311.3040120539 540181.5033898501 584441.2182191664 515948.9923999606 442115.6463772208 510610.82864244556 1.0051136492688306 1.1850342923711055 1.1600703421427072 1.2855895829760546 1.0542496825679455 1.057912353378842 1.1445922911055622 1.0104544664117436 0.8658563852879266 1.0 18.961864608075107 1.5728964402690664 3.4603811721735327 0.932434060774038 1.131567641252307 0.49361269151388487 0.08039568653876299 0.157473742543628 4.327397920274227 0.05200824413568214 0.021315957258504627 37.402139033232764 -1.5728964402690664 0.199133580478269 IAIYELLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IAIYELLFK 9 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3 P46783 RPS10 40S ribosomal protein S10 0 ; 152.59 0.00018634 270150000.0 557900.0 586450.0 578370.0 491130.0 390860.0 526800.0 617380.0 547720.0 850190.0 591900.0 False True 554896.3283885166 605969.6337334882 659799.4687178405 553307.0076433066 440633.7041912765 490383.55595381226 587514.9707793688 588593.6476658041 640672.0664623311 554124.4352489151 1.0013929960321182 1.09356237550016 1.1907063228883883 0.9985248302482072 0.7951890877963935 0.8849700983381645 1.0602581900497756 1.06220482300407 1.1561880792615442 1.0 19.079850461465963 -0.15215712526409914 7.252642447593213 1.000000011027296 1.0260511795337026 0.005130664476124203 0.11209317499761147 0.0 0.0 0.11771131142580676 0.02774482217718317 0.7044381611528713 0.15215712526409914 0.026051168506406652 IALESEGRPEEQMES(ph)DNCSGGDDDWTHLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 IALES(0.003)EGRPEEQMES(0.547)DNCS(0.45)GGDDDWTHLSSK 70.605 0.0027991999999999995 712070000.0 85691.0 84206.0 89323.0 89983.0 94816.0 110740.0 102180.0 99480.0 108810.0 108190.0 True False 85229.64917716519 87008.74580639804 101898.90199056591 101374.83857383509 106890.25558153822 103084.8044539201 97237.16303449395 106903.70274920441 81995.2334793003 101285.22157388102 0.8414815888514957 0.8590468032192712 1.0060589334470404 1.0008847983798772 1.0553391098973772 1.017767477348375 0.9600330781086925 1.0554718752451469 0.8095478511590171 1.0 16.628064161730414 4.257129848763707 7.388248194736377 0.995676162903205 0.8489419399639317 0.40610076563674957 0.06620644546420475 0.13698373222820562 33.208562747801636 0.015423673741385665 0.04026098680580572 18077.1452986012 -4.257129848763707 -0.1467342229392733 IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 IALES(0.05)EGRPEEQMES(0.13)DNCS(0.82)GGDDDWTHLSSK;IALESEGRPEEQMES(0.001)DNCS(0.999)GGDDDWTHLSSK 155.88 1.8847e-09 921490000.0 196259.0 193413.0 184549.0 182734.0 182598.0 215960.0 201797.0 210692.0 264810.0 220970.0 True False 195202.36335042494 199850.63478437247 210531.89507133616 205868.1056638607 205850.77295686112 201031.19351515785 192035.30817059873 226414.90691229794 199551.12377220383 206867.5054180652 0.9436105634663801 0.966080363276426 1.0177137034928008 0.9951688896127752 0.9950851030994484 0.9717871983271971 0.9283009807775677 1.0944923730516727 0.9646325234546844 1.0 17.65834752005069 1.750979706085837 24.999999999989193 1.0283238376031396 0.9768872839515469 0.2131389681747824 0.038961578447424546 4.764261580914714 9606.0416157555 0.01754898039811814 0.009732097530676982 56.361131851927105 -1.750979706085837 -0.05143655365159272 IALLPLLQAETDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 IALLPLLQAETDRR 14 1 U3KQP3;B4DEZ3;K7EJE1;E7ENQ6;Q9P0J0;Q9P0J0-2 U3KQP3 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 0 158.86 8.0242e-06 112290000.0 54430.0 76768.0 77763.0 63976.0 95027.0 146020.0 65353.0 46885.0 83133.0 91887.0 False True 54136.954927741484 79323.17647276404 88711.35447188713 72075.35504039298 107128.12518084336 135925.98109410706 62191.62571729583 50383.79677720599 62645.98607512797 86022.69299158138 0.6293334124408265 0.9221191956932459 1.0312552581976115 0.8378644347654478 1.2453472619292152 1.580117715070946 0.7229676676523277 0.5857035512958982 0.7282495338905377 1.0 16.39242967596553 -2.1594580049892267 2.2389163595882318 1.1887141880572176 0.9170635746530259 0.00670041831477175 0.28855863538759996 54335370.563687555 13858993.41502638 51909041.85850243 0.07733698403223743 0.006926949077779274 2.1594580049892267 -0.2716506134041917 IAMENDDGRTEEEKHSAVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IAMENDDGRTEEEKHSAVQR 20 2 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9 Q8WWM7 ATXN2L Ataxin-2-like protein 0 69.361 0.011978 193110000.0 169770.0 219460.0 204730.0 234230.0 229250.0 205550.0 232200.0 203670.0 271750.0 206060.0 False True 168855.9771832203 226764.59343362864 233554.20445493923 263883.49398385704 258443.62862879297 191340.81231265407 220967.5989098598 218868.8896153042 204780.85376343929 192909.0743831585 0.8753138115620024 1.1754998781613863 1.2106957912775573 1.3679164384964506 1.3397173225530536 0.9918704598240438 1.1454494798465058 1.1345702130143653 1.0615408031905276 1.0 17.557561483348273 2.7254696154284055 24.780152040409178 1.0863829319973344 1.203418998667951 0.17684060387325262 0.1330205717076473 1415.3938671158314 2679215.3076655264 0.04503671881426379 0.042693331487313115 531.4588157200496 -2.7254696154284055 0.11703606667061672 IANDNSLNHEYLPILGLAEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 IANDNSLNHEYLPILGLAEFR 21 0 P17174;P17174-2 P17174 GOT1 Aspartate aminotransferase, cytoplasmic 0 ;; 175.77 1.2741e-12 1490236000.0 594040.0 789612.0 824628.0 833669.0 741578.0 689941.0 728722.0 722964.0 1023112.0 805538.0 False True 590841.7546440478 815893.7580894661 940728.4546049329 939211.4099219913 836013.5626228262 642247.0026164182 693470.9328716234 776915.2448168057 770979.7565984171 754127.8751842206 0.7834768798325021 1.0819037260625821 1.2474389099794634 1.2454272555467572 1.1085832922150005 0.8516420407606975 0.9195667680394658 1.0302168509909788 1.0223461855326323 1.0 19.524449652111084 2.806026360278532 15.342748527627654 0.9681255553716012 1.1097534957084318 0.19181501395173617 0.12974419892179712 6.532553857188263 1483.9528725410005 0.04192969379700631 0.044474077471608885 639.7736665084747 -2.806026360278532 0.14162794033683068 IANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGK ddPTM_BT-474_Trastuzumab_2h_R1 1 IANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGK 38 2 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 286.24 2.3307999999999997e-77 261360000.0 159310.0 132340.0 146400.0 119680.0 107310.0 180730.0 186150.0 162310.0 230550.0 177450.0 False True 158452.29266100496 136744.8568987808 167011.8474683882 134831.47572893297 120975.29242379831 168236.5604926586 177145.2133379432 174422.39639348004 173734.0417117237 166124.9890774116 0.9538137130421043 0.8231444146856189 1.0053385008233973 0.8116266943205255 0.7282185124323816 1.0127107392269747 1.0663369449818074 1.0499467741858028 1.0458031791398126 1.0 17.34190957908219 2.546408895453051 9.385722000574841 1.0452425652396948 0.867096260763977 0.5779780846250866 0.0731051297108078 0.33181857040003765 43.28858817311899 0.02377812665704486 0.02238253027557396 351.891596379994 -2.546408895453051 -0.1781463044757179 IANPVEGSTDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IANPVEGSTDR 11 0 F8VZX2;Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3;Q15366-5;Q15366-4;Q15366-8;Q15366-7;F8VRH0 F8VZX2;Q15366;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 ; 215.84 2.9121e-11 897880000.0 371810.0 417020.0 398030.0 412390.0 382370.0 425760.0 426260.0 356230.0 486400.0 450220.0 False True 369808.2162719747 430900.25860608695 454069.16426122026 464598.53171670047 431062.5530154483 396328.2133312361 405640.1753286685 382813.69149928744 366533.2374260784 421486.5741472659 0.8773902633082804 1.0223344823684275 1.0773039809865215 1.1022854824181691 1.0227195347504392 0.9403104099651829 0.9624035502182787 0.9082464661508617 0.869620196485815 1.0 18.685127151346403 2.716876099109612 4.114200502914905 0.9295765688117265 1.02885532246759 0.29814675087961573 0.06388743667248833 0.25610535046885885 10.24896460077727 0.021668781100996917 0.021250462364996017 521.046039453128 -2.716876099109612 0.09927875365586358 IANS(ph)MVST(ph)WT(ph)GPPAMK ddPTM_BT-474_Trastuzumab_2h_R1 3 IANSMVSTWTGPPAMK 16 0 Q6P1X5 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 3 IANS(1)MVS(0.027)T(0.988)WT(0.985)GPPAMK;IANS(1)MVS(0.009)T(0.996)WT(0.995)GPPAMK;IANS(1)MVS(0.024)T(0.989)WT(0.987)GPPAMK 57.36600000000001 0.03746 10783400000.0 691342.0 1385020.0 1077110.0 1325230.0 1187950.0 822645.0 845920.0 301776.0 458173.0 835030.0 True False 687619.8914873166 1431119.5534377312 1228757.7255920463 1493003.982121105 1339228.3909687013 765777.4874480321 804999.6178717873 324296.05750747793 345262.40335365664 781737.6704948494 0.8796043960015958 1.830690278148954 1.5718287246081255 1.9098529320916764 1.7131429653645238 0.9795837099206 1.0297567179565656 0.414840002915805 0.4416601839528871 1.0 19.57632503469367 2.3860683746896014 1.7892838047262651 0.6014042212447167 1.608614410719366 0.610484947635901 0.32488357513571325 0.2118980503243517 1.38192119817934 0.1468529795246772 0.10717020348489835 243.25869618694267 -2.3860683746896014 1.0072101894746495 IAPELYHK ddPTM_BT-474_Trastuzumab_2h_R1 3 IAPELYHK 8 0 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 ;; 90.709 0.013004 835090000.0 1100640.0 1192700.0 1160460.0 1024060.0 900390.0 1144380.0 1209020.0 1013480.0 1702590.0 1281500.0 False True 1094714.2765326004 1232398.2984976256 1323842.6811008614 1153705.8910007635 1015049.3294703553 1065271.704180758 1150535.083695087 1089111.0239471619 1283009.5080371452 1199713.572852652 0.9124796962408397 1.0272437741679095 1.103465619675418 0.9616511116545156 0.8460763905977939 0.8879383615272258 0.9590081413844228 0.9078092042899023 1.0694298514823284 1.0 20.194258578200188 3.48967603235791 24.849013228159166 0.9339369559541286 1.0184939880092154 0.14471837965600476 0.07239129154264284 840.4598633876991 1663476.4735389277 0.01948013666408817 0.028583982490728282 3087.9910458668037 -3.48967603235791 0.0845570320550868 IAPPDGTAGS(ph)PDS(ph)RY(ph)IRVET(ph)CMFMIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IAPPDGTAGSPDSRYIRVETCMFMIK 26 2 F8VWT9;J3KPF0;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 4 IAPPDGT(0.021)AGS(0.995)PDS(0.995)RY(0.995)IRVET(0.993)CMFMIK 47.96 0.073976 972100000.0 325670.0 299350.0 278480.0 255050.0 262450.0 331020.0 302480.0 247330.0 367670.0 322120.0 True False 323916.6289053382 309313.68378910376 317687.56340844755 287339.30384913436 295871.4518369763 308137.3665372642 287847.88681418804 265787.0205162919 277062.6550255891 301562.0258191931 1.0741293703191535 1.0257050202155038 1.0534733693522897 0.9528364954724564 0.9811296731849497 1.0218042729359216 0.9545229908581805 0.8813676715238982 0.9187584354261732 1.0 18.202095243190616 3.616426389499857 0.5534310803070248 0.9282518755207245 1.0834836689864606 0.5070359229492392 0.040306590535576114 1.125412287862733 0.5903523752340155 0.029215757115246675 0.09904172767136973 4134.532303844711 -3.616426389499857 0.15523179346573612 IAQEIASLS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 3 IAQEIASLSK 10 0 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 IAQEIASLS(1)K;IAQEIASLS(1)K;IAQEIASLS(1)K 155.86 1.2558e-05 350304000.0 949670.0 738860.0 636970.0 541190.0 622690.0 864180.0 753320.0 773200.0 1135030.0 798730.0 True False 944557.082238256 763452.5084496988 726649.8393575083 609704.5985105389 701985.8805272104 804441.2706609067 716879.033638138 830900.1102300462 855317.0651227839 747754.3675728434 1.2631916618611267 1.0209937133872053 0.971776121771326 0.8153808589438213 0.9387920832957563 1.0758095245529153 0.9587092563097631 1.111193924452876 1.1438476352857438 1.0 19.512204906471215 -0.1619238203052012 8.279538126022201 1.000000001755326 1.026052370218341 0.0037557007273448795 0.11804196976558103 0.0 0.0 0.11731428899376195 0.027651243092522485 0.688773103596819 0.1619238203052012 0.026052368463014952 IAQEIASLS(ph)KEDVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IAQEIASLSKEDVSK 15 1 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 IAQEIASLS(1)KEDVSK;IAQEIAS(0.039)LS(0.961)KEDVSK 200.39 4.2043000000000005e-09 850730000.0 980590.0 546410.0 475450.0 466560.0 487830.0 747680.0 725360.0 753040.0 1188190.0 727190.0 True False 975310.6123937916 564596.9265381795 542389.2273145162 525626.448162525 549952.2589050558 695994.641449404 690271.5656557116 809235.6686596387 895376.4954302894 680780.1116213185 1.4326367585431234 0.8293381620587567 0.7967172043595455 0.7720943065018662 0.807826564726328 1.0223486696634705 1.0139420260262724 1.188688762855301 1.315221288262809 1.0 19.37682936503823 2.029696090831719 1.9274169088530992 1.1870548136261692 0.9123367690413657 0.20018718186045303 0.1957238480743102 0.47357594367552036 3.306833597355089 0.1131118571911368 0.05962923298136208 107.07697432658229 -2.029696090831719 -0.2747180445848034 IAQLEEQLDNETK ddPTM_BT-474_Trastuzumab_2h_R1 1 IAQLEEQLDNETK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 171.05 5.9898e-05 22491000.0 29862.0 29240.0 22187.0 24617.0 27416.0 37628.0 27317.0 26036.0 47610.0 41483.0 False True 29701.22630998011 30213.235724046757 25310.736747138875 27733.509675962116 30907.265092636815 35026.86492678443 25995.572348926136 27978.938528129132 35877.15344131498 38835.519424616905 0.7647953922087422 0.7779794418018087 0.6517419393931166 0.7141274299110445 0.7958504366764164 0.9019285809933506 0.6693761982348604 0.720447130427563 0.923823190029829 1.0 15.245089141666927 1.1124531599695575 4.208577851080957 0.9956493609259521 0.7475590129802372 0.6230167608683238 0.06713858002104908 0.13372924941319878 3.89320058255941 0.06697352992816799 0.017220702287910637 12.955469611533358 -1.1124531599695575 -0.24809034794571494 IAQNDHDLGDMSTVADPSVISHLFSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 IAQNDHDLGDMSTVADPSVISHLFSHR 27 0 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ;;; 124.62 2.7266e-05 2319030000.0 553736.0 743061.0 697254.0 707945.0 684063.0 761983.0 774481.0 192365.0 752121.0 627818.0 False True 550754.7469018531 767793.3361951392 795421.3025595867 797570.7644127633 771174.3682909398 709308.9087250443 737016.3952252684 206720.2531096775 566770.8574550573 587750.1177379683 0.9370559533386457 1.306326129121148 1.3533324427409177 1.3569895442680924 1.3120786283444794 1.2068205302193908 1.2539621396619545 0.35171452437179745 0.9643058169623983 1.0 19.164843397315476 1.7662628290290239 24.999999999999996 0.7102695969261212 1.2582788806307947 0.5310351951535044 0.20171082144228458 12.094434195257564 10921.267218160217 0.08824581812559346 0.04894232946016884 58.37983040668216 -1.7662628290290239 0.5480092837046735 IAQPGDHVSVTGIFLPILR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAQPGDHVSVTGIFLPILR 19 0 P33993;P33993-3;P33993-2;C9J8M6 P33993 MCM7 DNA replication licensing factor MCM7 0 ; 186.05 2.1393e-14 692200000.0 253780.0 420560.0 471440.0 525400.0 485300.0 547020.0 539760.0 462800.0 488460.0 515880.0 False True 252413.67667760857 434558.0853661117 537814.6541700618 591915.5861295247 547100.0784015405 509205.79494657234 513649.74671656376 497336.4860507823 368085.5780286647 482956.096732912 0.5226431105956206 0.8997879689392021 1.1135891187796478 1.225609512197276 1.1328153471972875 1.0543521417189545 1.0635537064161469 1.0297757692990115 0.7621512193731061 1.0 18.881532520838345 4.670794888130236 2.7222881504487915 1.056726981223211 0.46092747242291576 0.657992443880636 0.11399754835334895 0.22546579124997074 2.4594375359514307 0.029246025509684054 0.27954696612387436 46859.201970671405 -4.670794888130236 -0.5957995088002952 IAQVS(ph)PGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAQVSPGPR 9 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 IAQVS(1)PGPR;IAQVS(1)PGPR 124.46 0.00055506 1256650000.0 779930.0 1056360.0 982380.0 913000.0 877890.0 1220720.0 1174570.0 969790.0 1288460.0 1199430.0 True False 775730.94353837 1091520.3040168944 1120690.5649999676 1028585.7063880009 989684.0878383049 1136334.4996657877 1117751.5618068657 1042160.6542938383 970936.297479453 1122881.3505163144 0.6908396360681203 0.9720709169450541 0.9980489608137677 0.9160235014278622 0.8813790409674506 1.0119809177909023 0.9954315843725698 0.928112889055144 0.8646828955107365 1.0 20.098774062454478 4.741458170278878 24.69881798207881 0.9507074779657199 0.6908395238294267 0.7121313279536394 0.04980181050845613 125.70315939019 1071430.1131739793 0.01201687677083597 0.08405989442087664 55138.909196084984 -4.741458170278878 -0.25986795413629316 IAS(ph)DEEIQGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IASDEEIQGTK 11 0 Q8WX93-8;Q8WX93-3;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-8 PALLD Palladin 1 IAS(1)DEEIQGTK;IAS(1)DEEIQGTK 252.08 2.3498999999999998e-20 1376680000.0 1498180.0 1210110.0 1035100.0 1054860.0 1012090.0 1427420.0 1164030.0 914390.0 1494750.0 1121150.0 True False 1490113.9653434476 1250387.779823057 1180833.0827495141 1188405.1678427686 1140973.6623725842 1328745.8151852512 1107721.4218735758 982626.4249783378 1126388.8911238315 1049597.2471351945 1.41970071797598 1.1913024574291775 1.1250344701003352 1.1322487469231088 1.0870585507791637 1.2659577936317707 1.0553775983092823 0.9361937901993845 1.0731629624584427 1.0 20.001404410523133 7.999999999999999 0.34929242134132893 1.0224676537732273 5.116471467380166 0.6376321135674625 0.07878290398233494 42.554499217538634 0.6011296430159108 0.07149176937651724 114.62509672247096 99999999.99999979 -7.999999999999999 4.094003813606939 IASEASR ddPTM_BT-474_Trastuzumab_2h_R1 1 IASEASR 7 0 Q99880;Q96A08 Q99880 HIST1H2BL;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-A 0 88.029 0.043988 76884000.0 118090.0 151960.0 174980.0 125230.0 120690.0 94907.0 162480.0 123660.0 212770.0 135300.0 False True 117454.2165610324 157017.89673824018 199615.66304657498 141084.10515987873 136059.15611432507 88346.30247704714 154620.22166612418 132888.13713275647 160335.68447192988 126665.03816384233 0.9272820524405823 1.239630911689587 1.5759333904622552 1.1138362029890616 1.0741650425931375 0.6974797762486791 1.220701654596445 1.0491303603514057 1.2658243095031028 1.0 16.950658843997786 3.4928357532763443 24.612772545522276 1.0525525836787102 1.263161629100093 0.155733228255868 0.2035365277027397 998.6135271905756 1564072.0674551209 0.0549934105625595 0.08235274779457442 3110.5397332073962 -3.4928357532763443 0.21060904542138292 IASHYYITNDTVQTYNQLLKPTLSEIELFR ddPTM_BT-474_Trastuzumab_2h_R1 2 IASHYYITNDTVQTYNQLLKPTLSEIELFR 30 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 307.08 1.7465e-82 849930000.0 285510.0 271160.0 271060.0 242050.0 265850.0 300590.0 272790.0 285470.0 359930.0 309220.0 False True 283972.8458831434 280185.39668031863 309222.89190424373 272693.5051820542 299704.42168359744 279810.92081274936 259594.10554100195 306773.2209872878 271230.07431490236 289485.31486343895 0.9809576904345011 0.9678743006790951 1.0681816176068057 0.9419942607820846 1.0353009506716402 0.9665807087476843 0.8967436074035817 1.0597194580733886 0.936938975446308 1.0 18.14313063884803 IASLEVENQSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 IASLEVENQSLR 12 0 P29692;P29692-2;E9PRY8;E9PK01;E9PQ49;A0A087X1X7;E9PI39;E9PPR1;E9PL12;E9PMW7;H0YCK7;E9PIZ1;P29692-3;E9PL71;E9PN91 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 ;;; 220.82 6.6682e-11 855579000.0 599602.0 577148.0 561088.0 569411.0 539706.0 625336.0 592276.0 540936.0 692480.0 569107.0 False True 596373.8094540454 596358.0222866666 640084.3133356773 641498.3742169744 608434.3600119151 582107.9942026064 563625.3471659621 581303.3911373502 521827.58275660226 532786.1040229845 1.1193494067336218 1.1193197753914008 1.2013907804698747 1.2040448678618314 1.1419861655882584 1.0925735296157313 1.0578829720034275 1.0910633493404187 0.9794316683869264 1.0 19.023196929371203 1.943241088302695 0.819711275552753 0.9980176332989378 1.161208160003001 0.7400859578710874 0.03606992848643617 0.3428331097369787 0.42973814171448904 0.03374513403287602 0.016581732741448658 87.7487802548127 -1.943241088302695 0.1631905267040633 IATGS(ph)FLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IATGSFLK 8 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 IATGS(1)FLK 116.52 0.0042772 0.0 89558.0 82747.0 75759.0 72043.0 68251.0 100680.0 92380.0 80086.0 115910.0 93719.0 True False 89075.82967882931 85501.18387338227 86425.20869096732 81163.63641326489 76942.36029462921 93720.22857522753 87911.2264741296 86062.42398846796 87345.53361442607 87737.77318312724 1.015250632049998 0.974508250795507 0.9850399155968967 0.9250706220211363 0.8769582074306157 1.0681856306019262 1.0019769511432701 0.9809050408521028 0.9955294104868323 1.0 16.420910470241814 2.7263301247112683 24.997051738894886 1.005278833961962 0.9563945333386157 0.3023834488767033 0.04072983391895408 1138.122161384893 2326124.403180122 0.013926943475350234 0.013217832027797569 532.5128899347077 -2.7263301247112683 -0.048884300623346366 IAVDEVHCCSQWGHDFRPDYK ddPTM_BT-474_Trastuzumab_2h_R1 3 IAVDEVHCCSQWGHDFRPDYK 21 1 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 0 ;; 260.53 8.636799999999997e-37 1262100000.0 873494.0 937609.0 962427.0 919797.0 1018093.0 1164244.0 1199024.0 761332.0 1421420.0 1096618.0 False True 868791.2053583071 968816.7487683907 1097928.356034553 1036243.2058910888 1147741.1088400155 1083762.5526155839 1141022.628403514 818146.4598055617 1071130.0870521741 1026630.9003780955 0.8462546812475078 0.9436855528229158 1.0694479930715113 1.009362961420169 1.1179685984683654 1.0556496519016207 1.111424396034923 0.7969236650720805 1.043344873661693 1.0 19.969486159056338 4.554948960938582 3.4029751355814937 1.0151313675468858 0.8492865361499057 0.2942848337321695 0.08577908196692757 0.3781222888940315 7.710051074641826 0.023153397857966607 0.12247246555928756 35887.97559781578 -4.554948960938582 -0.16584483139698014 IAVHPDYQGMGYGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IAVHPDYQGMGYGSR 15 0 Q9H0A0;Q9H0A0-2;A0A087WV29 Q9H0A0 NAT10 N-acetyltransferase 10 0 ; 125.89 8.7659e-05 665330000.0 284400.0 351280.0 361330.0 338270.0 331620.0 364550.0 356110.0 305800.0 415290.0 397630.0 False True 282868.8219998104 362972.14244675613 412202.1232633384 381094.94731639524 373849.8413342653 339349.51655839407 338883.59882769256 328620.3488209359 312947.3441008972 372252.9129718297 0.7598834344681583 0.9750686423083118 1.1073173879892027 1.023752760653977 1.0042899015878393 0.9116101035966222 0.9103584875193109 0.8827878503285326 0.8406847420011446 1.0 18.50592361273665 2.6496586085883584 5.017217705423705 0.8991648762160278 0.984141440709768 0.10572450754411156 0.09031494719118804 0.4305904173831188 18.13203733480547 0.03048636054301758 0.02873397678115427 446.3325998457309 -2.6496586085883584 0.08497656449374014 IAWTHITIPESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 IAWTHITIPESLR 13 0 E9PP67;E9PQ25;F2Z2Y8;E7EN89;Q9H0E2-2;Q9H0E2 E9PP67 TOLLIP Toll-interacting protein 0 116.71 0.00056357 344680000.0 273000.0 339930.0 379120.0 321970.0 272540.0 318140.0 344090.0 244280.0 408830.0 317060.0 False True 271530.1983331514 351244.36455797544 432496.8006298861 362731.36898767244 307246.35352886043 296147.7306210054 327445.0521485521 262509.4140287056 308079.32454133214 296824.95935127704 0.9147822303306017 1.1833383733148122 1.457076930373798 1.2220379639921 1.0351095615421284 0.9977184239096613 1.103158753442421 0.8843913079359316 1.0379158316559765 1.0 18.179252884516558 3.181180295394136 4.735022398738094 0.9988710393966624 1.212694917417336 0.3152656380063993 0.132389315657869 0.2313361250599451 10.544184124746614 0.04028736854885638 0.04962871451422788 1517.6802948194502 -3.181180295394136 0.2138238780206736 ICANHYITPMMELKPNAGSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICANHYITPMMELKPNAGSDR 21 1 P43487;F6WQW2;P43487-2;C9JXG8;C9JJ34;C9JGV6 P43487 RANBP1 Ran-specific GTPase-activating protein 0 ; 157.97 3.5427e-10 4880600000.0 2559200.0 2541900.0 2527200.0 2551300.0 2435500.0 2934600.0 2994500.0 2714100.0 3585600.0 3073400.0 False True 2545421.5515538515 2626505.604889004 2883007.793183815 2874294.3184093186 2745646.488660527 2731738.009305348 2849644.5948991203 2916639.9239205485 2701976.924578428 2877252.980729876 0.8846707497052106 0.9128518147273708 1.0020001065226039 0.9989717058804447 0.9542596730455156 0.9494257291940957 0.9904046025790362 1.0136890789424715 0.9390821532463977 1.0 21.456260644068006 4.358468384928936 4.685221151877349 0.9820658281393737 0.8912841883825734 0.6529899555411032 0.0242623469320486 0.1189900973579909 4.215206412507064 0.0062278360418263875 0.01841891501944527 22828.027388288458 -4.358468384928936 -0.09078163975680031 ICDECNYGSYQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ICDECNYGSYQGR 13 0 Q7RTV0 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A 0 105.65 0.0019885 0.0 47812.0 32301.0 35129.0 23171.0 27785.0 35462.0 38019.0 36314.0 70723.0 35891.0 False True 47554.585504412586 33376.119258633174 40074.8578532583 26104.446224223855 31323.25505540248 33010.59540856887 36179.87572331596 39023.935078755654 53294.264289647595 33600.40565216894 1.4152979579085196 0.9933248903046714 1.1926897034551553 0.7769086627839205 0.932228479014822 0.9824463356274391 1.0767690157627758 1.1614126175359618 1.5861196689513002 1.0 15.036191030078477 1.5366080316560644 4.136328982507231 1.315049502231802 1.0399227804698499 0.16857207971395194 0.20692398030666484 0.2501608006626616 9.455592251387891 0.12358142703980869 0.051598981957883046 34.403928122445045 -1.5366080316560644 -0.2751267217619522 ICDEITGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ICDEITGR 8 0 Q8N335;C9K0P5;C9JFA7 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein 0 160.54 0.0008207 284570000.0 367250.0 439520.0 349710.0 376570.0 391900.0 388720.0 388650.0 332800.0 478080.0 416650.0 False True 365272.76680531097 454149.1575045491 398946.12826618896 424243.72338940756 441806.14202671376 361848.70134845487 369849.51471282175 357635.22592415835 360263.589943791 390059.04028798896 0.936455072379869 1.1643087599488555 1.0227839559150802 1.087639766216364 1.1326647927465514 0.927676746272293 0.9481885471485392 0.9168745984200458 0.9236129732509228 1.0 18.573332984781082 2.724608160424136 24.55070500770759 0.9368626507680062 1.0725716397216294 0.5068937988562258 0.061672141861334434 451.00549692900245 793586.51929239 0.01847216017936053 0.017495968506881912 530.4056729611391 -2.724608160424136 0.13570898895362316 ICDLLSDFDEFSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICDLLSDFDEFSSR 14 0 Q8N142;Q8N142-2 Q8N142 ADSSL1 Adenylosuccinate synthetase isozyme 1 0 ; 244.0 3.3728000000000004e-17 60411000.0 66734.0 83379.0 72643.0 74285.0 73851.0 85628.0 79326.0 65757.0 83627.0 80618.0 False True 66374.71155884438 86154.21961133018 82870.5029757249 83689.47338338736 83255.48710082874 79708.73790663072 75488.6983252522 70664.12124728024 63018.24639438872 75472.89021945775 0.8794510368669073 1.1415253789912323 1.0980168208048824 1.108868007307494 1.1031177798907792 1.0561240953520674 1.0002094540933637 0.9362848175259392 0.8349785758985272 1.0 16.203670902537528 1.9467312516008326 2.020151663902503 0.9121935601793215 1.0742434072866596 0.39922297060427425 0.07695803615290733 0.2933146957192134 2.212919293204644 0.04431107589796224 0.02202100794613324 88.4568055513736 -1.9467312516008326 0.16204984710733805 ICDPGLTAFEPEALGNLVEGMDFHR ddPTM_BT-474_Trastuzumab_2h_R1 7 ICDPGLTAFEPEALGNLVEGMDFHR 25 0 E9PF82;E9PBG7;H0Y9C2;Q13557;D6R938;Q13557-8;Q13557-6;Q13557-11;Q13557-12;Q13557-10;Q13557-3;Q13557-4;Q13557-9;Q13557-5;H0Y9J2 E9PF82;Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 0 ;;;;;; 243.52 1.0319999999999999e-38 3003856000.0 746865.0 933284.0 866537.0 939052.5 877140.0 894150.0 923605.0 827672.0 1049606.0 973948.0 False True 742843.961824503 964347.7937579085 988537.8775253731 1057936.4502167776 988838.5797839032 832339.5151026977 878926.697636268 889437.0874732572 790944.6652998298 911789.8048011655 0.8147096599599459 1.0576426591742867 1.084172988467385 1.1602854568520673 1.0845027818659805 0.912863371272512 0.9639575843118097 0.975484791329968 0.8674638180148456 1.0 19.79834175220164 2.738512269492167 24.99998102355124 0.9468865019581207 1.0503356532155124 0.21765696045783844 0.09020542457400468 6.797937318092287 3514495.901211519 0.029045731595419993 0.029016871197631168 547.6615730315214 -2.738512269492167 0.10344915125739162 ICDQISDAVLDAHLQQDPDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 ICDQISDAVLDAHLQQDPDAK 21 0 P31153 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 ;; 368.21 2.608599999999999e-112 1795300000.0 1258560.0 985350.0 1043700.0 907270.0 871920.0 1232020.0 1183890.0 1123170.0 1587630.0 1274110.0 False True 1251784.052799163 1018146.779093347 1190643.8879969723 1022130.2889755119 982953.8437252671 1146853.3572631276 1126620.7178010088 1206986.648741695 1196379.8596520657 1192795.2089795477 1.0494542930551178 0.8535805404218426 0.9981964037360479 0.8569201831804456 0.8240759489352723 0.9614838730315458 0.9445214981747353 1.0118976331019038 1.0030052524067268 1.0 20.18591493729347 2.0002779746089234 1.987242825888761 1.0063793026778416 0.9153911124058918 0.2330860606026458 0.06514280621371547 0.4542566445797042 3.3462302814773612 0.03693940356538436 0.01914129650821849 100.06402650729719 -2.0002779746089234 -0.09098819027194982 ICDQWDALGSLTHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 ICDQWDALGSLTHSR 15 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 ;;; 259.53 7.2785e-25 3654630000.0 3175850.0 3633310.0 3439910.0 3300990.0 3159390.0 3603940.0 3473480.0 3315790.0 3572410.0 3778750.0 False True 3158751.5764701054 3754242.5269677234 3924219.427766285 3718894.995541869 3561719.5893283393 3354808.11056223 3305454.502417833 3563231.0870404607 2692037.4233414847 3537586.9398493613 0.8929113630786449 1.0612438904830386 1.1092927168974078 1.0512519010204817 1.00682178272628 0.9483323428102337 0.9343811356784879 1.007249050730663 0.7609812759700312 1.0 21.75433417342368 2.803852894111745 2.606001824683314 0.9354590091879837 1.0364217043997666 0.2501187371643344 0.08161047985282531 0.4171756599243748 5.575574152200081 0.027304861994913627 0.028353504388138603 636.5798596199545 -2.803852894111745 0.1009626952117828 ICGDIHGQYTDLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 ICGDIHGQYTDLLR 14 0 P62140;E7ETD8;C9JP48;C9J9S3 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase 0 ;; 151.07 7.039400000000002e-06 1386870000.0 1746230.0 1966250.0 1962590.0 1917370.0 1570060.0 1849980.0 1866770.0 1618230.0 2282790.0 1923700.0 False True 1736828.4917043906 2031695.4426267776 2238905.612861915 2160108.8454076257 1769997.8345252904 1722095.2369844967 1776467.2033460801 1738990.5398054377 1720226.9923188295 1800927.81903757 0.9644076088693913 1.1281381858560726 1.2431956401553084 1.1994422111609142 0.9828255279388106 0.956226684257006 0.9864177700888858 0.9656081278897496 0.9551893052760618 1.0 20.780308928689752 3.208220816728731 12.49355883062174 0.9721674201383594 1.1411912991737825 0.5643261407343902 0.06848168084931923 0.7145633676312072 292.99428652282967 0.020707454903898852 0.024847070047695204 1615.1795850252647 -3.208220816728731 0.16902387903542304 ICGDIHGQYYDLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ICGDIHGQYYDLLR 14 0 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;A0A087WYY5;F5H1L6;F5H037;P62136;P62136-2;E9PMD7 F8W0W8;P62136 PPP1CC;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 ;;; 141.85 9.5621e-06 1361850000.0 1663430.0 1950220.0 2096240.0 1835220.0 1321620.0 1579850.0 1820320.0 1399770.0 2663270.0 1871730.0 False True 1654474.277704448 2015131.893767117 2391372.3711552876 2067558.6638306566 1489920.4731445392 1470638.6880668758 1732264.1673023119 1504227.945288036 2006942.7944896219 1752274.588931325 0.9441866521122564 1.1500091974717863 1.364724676292735 1.1799284637755414 0.8502779658827387 0.8392741054150578 0.9885803162612676 0.8584430515570238 1.1453357865068474 1.0 20.740797438469215 3.249881727394074 24.99359255909379 0.9324539058094117 1.1736629881487846 0.3942794567391178 0.12794805785830207 202.04029724449134 446041.4064846442 0.035899700155302784 0.04818154243063132 1777.7951922730883 -3.249881727394074 0.24120908233937288 ICGLDPTSTLGIYFEVVNQHNTPIPQGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ICGLDPTSTLGIYFEVVNQHNTPIPQGGR 29 0 A0A2R8YFH5;Q15437 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 160.43 6.8354e-12 93691000.0 53919.0 66126.0 56875.0 59169.0 62311.0 60735.0 53951.0 51238.0 62174.0 68978.0 False True 53628.706094964095 68326.96393598885 64882.505633637855 66659.78933326565 70245.9365037676 56536.532404811674 51341.18401716562 55061.63974129208 46852.05078891657 64575.764984963134 0.8304772867569106 1.0580898879308547 1.0047500892749184 1.032272546036238 1.087806493970684 0.8755069710436502 0.7950534388422767 0.8526672468241533 0.7255361326315896 1.0 15.978705208616311 2.568626625842943 5.594765730278459 0.8323005079781947 1.0068523026271265 0.41565361936880596 0.09076555589791856 0.19536483371102295 9.427923790999863 0.028145936720262166 0.026311763234442884 370.3621749653776 -2.568626625842943 0.1745517946489319 ICGVEDAVSEMTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ICGVEDAVSEMTR 13 0 C9JBI3;P78330 C9JBI3 PSPH Phosphoserine phosphatase 0 105.2 0.0020669 0.0 29090.0 28664.0 26907.0 31151.0 32555.0 28432.0 32823.0 29887.0 31443.0 26476.0 False True 28933.38267220284 29618.063912246085 30695.27172016343 35094.713406015995 36700.686281397444 26466.562761728903 31235.22609396356 32117.319703110923 23694.29396461389 24786.27901275599 1.1673144911066557 1.194937888700578 1.2383977322439743 1.4158927763201117 1.4806855947401316 1.0677908833394547 1.2601821385892045 1.2957701188864248 0.9559439701465428 1.0 14.597254085715008 1.2379433420974837 24.99986502328006 0.9779718447718557 1.2685796443796458 0.5125516652772124 0.1119710876620081 13.223881750116629 535362.4237883235 0.09172241048936133 0.02816549402062477 17.295907027124652 -1.2379433420974837 0.29060779960779004 ICHQIEYYFGDFNLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICHQIEYYFGDFNLPR 16 0 P05455;E7ERC4;E9PFL9 P05455 SSB Lupus La protein 0 ; 238.83 8.3459e-20 6842800000.0 1199560.0 1416240.0 1446710.0 1329170.0 1411650.0 1318130.0 1283160.0 1250740.0 1520610.0 1358120.0 False True 1193101.702243644 1463378.6922648405 1650394.1929712566 1497442.785717129 1591415.259994921 1227010.7756442649 1221088.648652782 1344076.5699290298 1145876.0406300768 1271443.6188549704 0.9383834914505457 1.150958383496959 1.2980474859416569 1.1777500500302858 1.2516601101259281 0.9650532335435207 0.9603954359788782 1.057126364076978 0.9012401522468007 1.0 20.278036057618962 2.726634550242521 24.623068314121134 0.985269689936787 1.1709530270217834 0.48793073977988966 0.09522078573177864 552.6801102439388 1141085.1560090252 0.03141298009002262 0.029838216260607897 532.886294056585 -2.726634550242521 0.1856833370849964 ICLTDHFKPLWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICLTDHFKPLWAR 13 1 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 ; 253.88 5.1426999999999986e-24 1506830000.0 1272750.0 1709220.0 1714610.0 1409280.0 1036660.0 1389770.0 1622220.0 1252570.0 2385600.0 1443170.0 False True 1265897.6554158179 1766110.3544546901 1956012.1843427112 1587694.7035032678 1168672.5062347862 1293698.471066683 1543747.021117799 1346043.1338215817 1797700.8454022496 1351065.6550400003 0.9369623531569523 1.3071980239201637 1.447755093948266 1.1751425236668174 0.8650005289344624 0.9575393070208577 1.1426143617514235 0.9962825483723292 1.3305799305134627 1.0 20.36566635346158 3.4675481446381733 24.817098859362012 1.0449316558726467 1.2504868529093476 0.19969265380206336 0.16612152120123666 259.5044509481335 672730.3633049788 0.04574813461270778 0.062024420337464095 2934.594806671301 -3.4675481446381733 0.2055551970367009 ICPVPPVSTVTGDENIS(ph)DSEIEQYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICPVPPVSTVTGDENISDSEIEQYLR 26 0 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 ICPVPPVSTVTGDENIS(0.787)DS(0.213)EIEQYLR;ICPVPPVS(0.004)T(0.004)VT(0.004)GDENIS(0.494)DS(0.494)EIEQY(0.001)LR 107.17 0.0018412 47680000.0 48136.0 54970.0 53824.0 51777.0 56653.0 55306.0 48269.0 49984.0 57447.0 57702.0 True False 47876.84112441236 56799.64321993328 61401.95135340525 58331.962891184565 63867.423741361024 51482.82639632027 45934.0440645135 53714.059893609134 43289.95660036172 54019.40895883242 0.8862896141810578 1.0514673209997474 1.1366646273416094 1.0798334157198701 1.1823051190736587 0.9530431263243688 0.8503248175025261 0.9943474193607711 0.8013778276128957 1.0 15.721190234560598 2.5192431810343794 11.880648424476 0.9157823244856408 1.070689737546544 0.40450145760674294 0.09050162670709268 1.3133719487727527 369.2924275685859 0.028975004134931946 0.027218943480945165 330.5545816190598 -2.5192431810343794 0.15490741306090328 ICQGCPHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ICQGCPHR 8 0 Q93008;Q93008-3;O00507;O00507-2 Q93008 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y 0 ;;; 89.296 0.014006 169959000.0 319889.0 373766.0 390830.0 324055.0 343696.0 278529.0 387035.0 369701.0 399203.0 426143.0 False True 318166.7531670088 386206.5753636821 445855.46684474207 365080.32977389253 387463.6483542055 259274.94581674156 368312.6384327202 397289.9659236391 300824.76969614124 398946.1889006223 0.7975179661291721 0.9680668373545646 1.1175829704587175 0.915111711631952 0.9712178211852097 0.6498995429213815 0.9232138285308124 0.9958485053296353 0.7540484859001294 1.0 18.605834638825105 4.75256586912375 22.608697676633383 0.9239183248830413 0.7975176358429144 0.08108875109554592 0.125169810667022 1709.209930705357 2758991.562897185 0.030138808120932954 0.5475918312206444 56567.35458727099 -4.75256586912375 -0.1264006890401269 ICSHSAPEQQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 ICSHSAPEQQAR 12 0 O75683 O75683 SURF6 Surfeit locus protein 6 0 83.226 0.012919 69190000.0 79648.0 77224.0 72317.0 80431.0 70587.0 72351.0 83508.0 65562.0 87435.0 75273.0 False True 79219.18401772468 79794.35415710622 82498.6050093678 90613.55635322382 79575.83604807247 67349.5456659345 79468.39900846081 70454.56935709027 65887.81581897456 70469.01269554245 1.1241704827054533 1.1323325119063807 1.170707547242056 1.2858638554326676 1.1292316012979429 0.9557327836692501 1.1277070015412267 0.9997950398636265 0.9349899097301008 1.0 16.104701380917113 2.9152185489732707 5.524245955873678 1.0146801007912913 1.1782722405176493 0.6340402727191946 0.06313907590139292 0.15595660029542074 7.781763365643375 0.019872255767433497 0.021290536425868256 822.6565292779708 -2.9152185489732707 0.163592139726358 ICSWNVDGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICSWNVDGLR 10 0 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;H7C4A8;G3V5M0;G3V359;G3V5D9 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 114.4 0.0031649 186769000.0 245160.0 297850.0 441810.0 229480.0 102037.0 141538.0 254430.0 138868.0 500990.0 199019.0 False True 243840.0857998366 307763.7571958726 504013.0077186386 258532.14447088548 115030.80712931792 131753.81120461388 242122.24888301318 149231.0353174158 377527.7274220629 186317.4370312616 1.308734650310392 1.6518247679858 2.7051306402098687 1.3875896351424544 0.6173915279331439 0.7071469708039583 1.2995147031911365 0.8009504515263207 2.0262608451334523 1.0 17.50740317362957 3.4838657360453404 24.822377964434125 1.0423986848975026 1.8951346397006994 0.3501296753591525 0.4946080521415843 285.29035938343776 1049982.639833829 0.1337573823856491 0.18813963620678156 3046.9528657884025 -3.4838657360453404 0.8527359548031967 ICSWSLDMLSHPQDSMELVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ICSWSLDMLSHPQDSMELVHK 21 0 Q13409-2;Q13409-3;Q13409-6;Q13409;Q13409-5;Q13409-7 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 ; 305.83 6.643399999999997e-56 721420000.0 242463.0 263800.0 229480.0 189044.0 241750.0 281010.0 288260.0 166936.0 296380.0 234593.0 False True 241157.606148172 272580.4235295328 261788.78932408296 212976.95101688194 272535.42953548813 261584.44012638734 274315.7625398634 179393.6120038321 223341.12028853048 219621.07389482806 1.098062229964586 1.241139653383472 1.1920021365957263 0.9697473345334435 1.2409347823606383 1.1910716739854148 1.2490411674757018 0.816832414223327 1.0169384764755494 1.0 17.744656970240914 1.74422944276019 24.99999999999984 0.9350927333029724 1.1684960901710386 0.5464662417028161 0.09350580591136225 0.7797980066328849 3451.552881653613 0.04219455188515742 0.023398977250859477 55.49188055040476 -1.74422944276019 0.23340335686806624 ICVNGDDAHPLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 ICVNGDDAHPLWK 13 0 A0A087X2I2;A0A087WT12;P36969-2;P36969;K7ERP4;K7EKX7;K7ENB4;K7EJ20;A0A0A0MTT1 A0A087X2I2 GPX4 Glutathione peroxidase;Phospholipid hydroperoxide glutathione peroxidase, mitochondrial 0 ; 120.84 0.00025362 725830000.0 1491670.0 1670540.0 1456190.0 1538780.0 1561480.0 1900310.0 1755010.0 1719960.0 2273840.0 1857520.0 False True 1483639.0144601178 1726142.9140372463 1661208.8945696203 1733589.390225333 1760325.222382933 1768946.0425485726 1670113.4615107405 1848312.1489799127 1713482.5998949714 1738971.4832971166 0.8531704106194516 0.992622898429854 0.9552824244247771 0.996905013610931 1.012279522287122 1.0172369469766254 0.9604030184233843 1.0628766295094643 0.9853425523955011 1.0 20.72980284397951 5.801949008162974 0.9595234413113667 1.0078856520070643 6.571601212696825e-13 0.6855142453586263 0.029204759490997413 7.097083388638113 1.0861122724146386 0.008632305756053262 11.930359922952094 633795.291053792 -5.801949008162974 -1.007885652006407 ICYIFHETFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ICYIFHETFGR 11 0 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 ; 160.77 2.7091e-05 668080000.0 592730.0 832150.0 787840.0 844930.0 772820.0 805000.0 832020.0 685050.0 883530.0 756110.0 False True 589538.8075384937 859847.6097047024 898761.0239719616 951898.0513673751 871234.0461369862 749352.2447661698 791772.0139749422 736171.9096134142 665795.8701954429 707854.4124616614 0.8328531929161692 1.214723811234663 1.2696975651340452 1.3447653000523345 1.2308096563347675 1.0586248126365336 1.1185520638650055 1.0400046911529093 0.9405830612541439 1.0 19.433093139804605 1.917625090580927 1.2289729950018573 0.9763914092706788 1.1856658579422532 0.24761628227131427 0.131879277184686 0.6370162621890071 1.7781173636707328 0.10455138927070692 0.04580918377898617 82.72277420754413 -1.917625090580927 0.2092744486715744 IDADKDGFVTEGELK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDADKDGFVTEGELK 15 1 O43852-2;O43852-4;O43852-8;O43852-7 O43852-2 CALU Calumenin 0 ; 137.73 2.1774e-05 379690000.0 756890.0 568430.0 510810.0 403250.0 467660.0 718700.0 713370.0 695830.0 1061780.0 662400.0 False True 752814.9883383838 587349.848926809 582727.6079598864 454301.40865384653 527213.728962013 669017.9606378217 678861.5677619597 747756.3679531454 800118.5461230708 620125.0648908289 1.2139728434794272 0.9471474097409853 0.9396936859220064 0.7325964299376044 0.8501732292579197 1.0788436051292334 1.094717188832661 1.2058154238367798 1.2902535172706318 1.0 19.242199677520574 2.410096504018359 2.454562735765593 1.1724167360646034 0.9279993481077958 0.35121648621951085 0.13369026437179626 0.3004883746599892 3.7013672277895853 0.05471293683836583 0.043864074016322 257.0967010573995 -2.410096504018359 -0.24441738795680756 IDAHLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDAHLNK 7 0 A0AVT1;A0AVT1-2;H0Y8S8 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 120.65 0.0045151 258690000.0 692520.0 735680.0 686650.0 624790.0 568390.0 763730.0 786180.0 693520.0 1091300.0 854290.0 False True 688791.5492662047 760166.6640720493 783324.3515312078 703888.3499388387 640771.0973885261 710935.1427270403 748149.4699007487 745273.9840232028 822363.7376708048 799768.4808055342 0.8612386781890273 0.950483399028682 0.9794388880419947 0.880115141859399 0.8011957369752001 0.8889261827510131 0.9354575578512492 0.9318621599997989 1.0282522472534958 1.0 19.60922289951886 1.4463679438556056 1.9774827844488854 1.0152509738608775 0.8982732363809532 0.4679862386974035 0.04769558533183034 0.30884617720805524 2.2572807105894586 0.04467974981193567 0.014234260698526402 27.949107484252437 -1.4463679438556056 -0.11697773747992424 IDASKNEEDEGHS(ph)NSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 IDASKNEEDEGHS(0.999)NS(0.123)S(0.878)PR;IDASKNEEDEGHS(0.883)NS(0.252)S(0.865)PR;IDASKNEEDEGHS(1)NS(0.373)S(0.627)PR 108.3 0.00022486 2121040000.0 2524550.0 2373170.0 2081830.0 2339280.0 2413590.0 3024950.0 3062070.0 2675570.0 4609880.0 3149410.0 True False 2510958.1033038762 2452159.52883844 2374933.5684092543 2635432.608148215 2720946.380031272 2815842.3264663694 2913945.9758566525 2875234.619669171 3473836.843227246 2948411.957454441 0.8516306878200807 0.8316882322494551 0.8054958407032413 0.8938481617146737 0.9228514940566327 0.9550369375443288 0.9883103236267073 0.9751807621047471 1.178206062570184 1.0 21.491506683802708 2.6259490425561975 0.6928573224321726 1.059723642431488 0.8234633704181651 0.7359327670788972 0.052454330333949195 0.3716150911668087 0.3745985525241673 0.03938323266121929 0.035716414679168515 422.6190238389903 -2.6259490425561975 -0.2362602720133229 IDASKNEEDEGHSNS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 4 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 IDASKNEEDEGHSNS(0.732)S(0.268)PR;IDASKNEEDEGHS(0.002)NS(0.499)S(0.499)PR;IDASKNEEDEGHS(0.033)NS(0.483)S(0.483)PR;IDASKNEEDEGHS(0.04)NS(0.817)S(0.144)PR 186.06 3.0146e-14 2457218000.0 2726009.0 2748790.0 2619910.0 2833677.0 2796925.0 3256317.0 3454845.0 3091161.0 5101198.0 3513875.0 True False 2711332.4704320743 2840281.8134713527 2988770.555334056 3192420.217656554 3153096.820076713 3031215.4703357066 3287720.9485604465 3321839.130417511 3844076.1054511457 3289616.489120261 0.824209289866845 0.8634081884210542 0.9085468063583728 0.970453616163111 0.9584998222452195 0.921449500378186 0.9994237806850484 1.0097952577158522 1.1685484062244482 1.0 21.649487970459486 3.939589893358476 0.360952461244832 1.0625792312552664 0.7414620949597396 0.6596240733700975 0.0525338887581451 2.208754198199962 0.3515596442451018 0.05252625211770345 0.29522988553515134 8701.41522503114 -3.939589893358476 -0.32111713629552685 IDASKNEEDEGHSNSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 IDASKNEEDEGHSNS(0.077)S(0.923)PR;IDASKNEEDEGHSNS(0.372)S(0.627)PR;IDASKNEEDEGHSNS(0.279)S(0.721)PR;IDASKNEEDEGHS(0.006)NS(0.205)S(0.789)PR;IDASKNEEDEGHSNS(0.252)S(0.748)PR;IDASKNEEDEGHSNS(0.009)S(0.991)PR;IDASKNEEDEGHS(0.001)NS(0.057)S(0.942)PR;IDASKNEEDEGHSNS(0.014)S(0.986)PR 227.87 1.6506000000000002e-19 79311979000.0 33402782.0 36032284.0 33056553.0 35124414.0 33795117.0 41111158.0 45035731.0 37127419.0 63077540.0 43471189.0 True False 33222945.13310997 37231596.79096439 37710628.329690516 39571161.21101266 38098724.83059808 38269240.41271645 42857180.63833057 39898055.534993604 47532925.46273232 40696820.50046262 0.8163523519664714 0.9148527165787106 0.9266234527894345 0.9723403628193223 0.9361597383305409 0.9403496376892987 1.0530842486292853 0.9803727918877609 1.1679763892658885 1.0 25.278412750413246 4.829305497914918 0.309345676036962 1.059176752316658 0.6601818687095345 0.5916487219542605 0.056313467382197904 5.566751342936982 0.41668951958274314 0.05926498902131908 0.8548230952213843 67500.2681208233 -4.829305497914918 -0.39899488360712343 IDASKNEEDEGHSNSSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ;;; 235.7 5.0744e-24 6689000000.0 6256030.0 7160800.0 6759900.0 7303500.0 7144500.0 8690000.0 8901600.0 7406800.0 12583200.0 8988700.0 False True 6222348.229590283 7399142.899204988 7711635.16189589 8228122.351155265 8054309.726230808 8089280.754059665 8470995.600585753 7959533.026968316 9482238.966241432 8415033.470386755 0.7394323803330403 0.8792767046314461 0.9164117040097124 0.9777884283064059 0.9571334154016896 0.9612891954056461 1.006650256400754 0.9458706320038553 1.1268213013780952 1.0 23.004537579140237 5.872641839890277 0.5489324279260871 1.004116875870799 3.881713210551578e-14 0.7618039636041956 0.04588736606293126 5.959977311686426 0.5281317696419692 0.02157410823705972 5.030016898941869 745833.4202687453 -5.872641839890277 -1.0041168758707602 IDASKNEEDEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDASKNEEDEGK 12 1 Q14103-2;Q14103-4;D6RBQ9 Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 145.0 5.7935e-05 470160000.0 529470.0 364100.0 358720.0 295840.0 345530.0 538530.0 497130.0 459590.0 910290.0 485920.0 False True 526619.3923496478 376218.84839690244 409224.6579498652 333293.31366684125 389531.1973832357 501302.68866326235 473081.9226789777 493886.93955073296 685961.2267610712 454908.1695829576 1.1576388984889683 0.8270215255571371 0.8995764097290817 0.732660646592458 0.8562853415895849 1.101986559447454 1.0399503774853749 1.0856849196696328 1.5079114261454885 1.0 18.795215818301344 2.1339115154143515 1.2498588264779131 1.2144672614406387 0.8898974819960221 0.37219507077653957 0.16429150710182117 0.4735962879097363 1.3990081833673664 0.10980529322333372 0.057097488936589495 136.11673255058548 -2.1339115154143515 -0.3245697794446165 IDDDDDERENFEITDWDLQNEFNPNR ddPTM_BT-474_Trastuzumab_2h_R1 3 IDDDDDERENFEITDWDLQNEFNPNR 26 1 Q9UBB9;F6XM96;F6UKU9;F6SQZ1;F6UQ07 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 ;; 252.21 1.4797999999999992e-52 282119000.0 142158.0 139274.0 122573.0 134227.0 141566.0 159505.0 144771.0 148563.0 195508.0 165543.0 False True 141392.63712323862 143909.65089708907 139830.21297638508 151220.12443739557 159593.59097257885 148478.79478438274 137767.87365107372 159649.52544762834 147327.67307298054 154977.90401150743 0.912340620587693 0.9285817343768147 0.9022590276224306 0.9757528042589036 1.029782871245495 0.9580642849148217 0.8889517155996908 1.030143790277187 0.9506366343813836 1.0 17.241703012224054 3.7296252674338204 23.722764640964087 0.9767934863261224 0.9158125882281629 0.34360043786843164 0.03911994488805058 360.1119564827952 956075.2236138078 0.010479893707789746 0.016532856046460313 5365.686163972951 -3.7296252674338204 -0.06098089809795948 IDDGDKTK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDDGDKTK 8 1 E7ETZ4;Q9Y6E2;Q75MG1;B5MCH7;E9PFE3;C9JF98;F8WDX8;E7EMS9;Q9Y6E2-2 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 68.22399999999999 0.052041 342470000.0 1224700.0 1051500.0 1154600.0 1029600.0 1136900.0 1224100.0 1266500.0 1349600.0 2075000.0 1711200.0 False True 1218106.351276963 1086498.541854826 1317157.644036893 1159947.2544327336 1281677.4760657588 1139480.8482214515 1205234.5565001613 1450314.0051299406 1563644.0535754794 1601989.7509679745 0.7603708766182451 0.6782181603835655 0.8222010429473867 0.7240665888978726 0.8000534805490032 0.7112909727000063 0.7523359970136633 0.9053204018650016 0.9760637061695773 1.0 20.611433487186293 1.589188987345822 2.4999881956046415 0.9863810087877154 0.7479572864044057 0.861217045641579 0.039636845097037916 0.08177241568675354 1.1442533873161218 0.027335486063702764 0.010307705922585989 38.831931004472246 -1.589188987345822 -0.23842372238330967 IDDIADGAVKPPPNKYPIFFFGTHETAFLGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDDIADGAVKPPPNKYPIFFFGTHETAFLGPK 32 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;M0R0J3 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 103.68 3.6849e-06 175360000.0 276970.0 265820.0 276880.0 218350.0 233810.0 408230.0 319960.0 346360.0 481450.0 365070.0 False True 275478.8242942597 274667.6580084169 315862.2973158975 245993.0876120703 263584.31759955565 380010.0209700549 304482.31243410346 372207.14198044327 362803.09859947715 341770.92004784854 0.8060335392364341 0.8036601182159177 0.9241930158121007 0.7197601468774195 0.7712309682832389 1.111885180040633 0.8908959029968828 1.0890544518191705 1.0615388183075496 1.0 18.382670123389023 2.7461089184592016 24.994041604715616 1.0288390591927867 0.8067914728897355 0.7018527120331803 0.0735420621426197 323.4853506384286 1071129.4602545372 0.022297646888461736 0.023232709945715555 557.3255053103745 -2.7461089184592016 -0.22204758630305121 IDDIFER ddPTM_BT-474_Trastuzumab_2h_R1 6 IDDIFER 7 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;;;;; 133.79 0.0075314 931240000.0 784142.0 900727.0 807729.0 822138.0 848928.0 940685.0 913690.0 752914.0 1077171.0 960328.0 False True 779920.2665983663 930707.153694031 921450.2222936726 926220.5865042922 957033.9488095272 875657.6600843051 869491.3240652448 809100.2658998244 811716.6404019062 899039.0448618359 0.8675043326046249 1.0352243976645772 1.024927924498853 1.0302339946165893 1.0645076587931772 0.9739929150895509 0.9671341072832582 0.8999612091643548 0.9028713992356702 1.0 19.77802424713464 2.1699030792373577 2.457629868823965 0.9255260326017057 1.008388533834562 0.19983167309224636 0.056738317179921206 0.3649655632839603 4.43557991463546 0.02565343620146153 0.01680585517084748 147.87783348889647 -2.1699030792373577 0.08286250123285621 IDDIVSGHK ddPTM_BT-474_Trastuzumab_2h_R1 5 IDDIVSGHK 9 0 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ;;;; 193.38 3.3648e-05 3736330000.0 7036010.0 6808700.0 6384320.0 5707280.0 6029690.0 7719000.0 7599810.0 7207830.0 9655800.0 7897040.0 False True 6998128.903934205 7035323.463553928 7283176.762495776 6429821.062819405 6797535.280727356 7185403.698571519 7232178.156206472 7745714.875219133 7276257.471091142 7393044.14620391 0.9465828643167942 0.9516138852175446 0.9851390872913227 0.8697122505512038 0.9194501136879686 0.9719140798396276 0.9782408995785535 1.0477030465449484 0.9842031681668323 1.0 22.817737097475504 2.26582113794037 2.2235409247439333 1.0142417227590554 0.9357531272847496 0.4939722641077795 0.03239063071719755 0.24515215236764115 2.4758746596515584 0.015043519006782843 0.010459951201425146 184.42557150480945 -2.26582113794037 -0.07848859547430587 IDDPTDSKPEDWDKPEHIPDPDAK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDDPTDSKPEDWDKPEHIPDPDAK 24 2 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 ;;; 162.82 1.0539999999999998e-11 14661100000.0 8543100.0 4978860.0 3828180.0 3180120.0 3245910.0 6790700.0 6576610.0 5789430.0 12843300.0 5438170.0 False True 8497104.898827635 5144578.345315567 4367154.468862941 3582722.8659349475 3659257.3984841234 6321274.892588374 6258474.249210054 6221466.664729867 9678240.80640287 5091101.334748424 1.6690111510513703 1.010504016135398 0.8578015210688678 0.7037225602801692 0.7187555614948186 1.2416321100198136 1.2292967351668942 1.2220276627114712 1.901011229210019 1.0 22.27954635102963 2.1646378456675612 1.666334661314604 1.3924160326538868 0.9797039141275361 0.1861146393562777 0.3333644102840099 0.6023409317660202 3.2552493047775246 0.19156490709838753 0.10968133549398355 146.0958386065067 -2.1646378456675612 -0.4127121185263507 IDDRDS(ph)DEEGASDR ddPTM_BT-474_Trastuzumab_2h_R1 5 IDDRDSDEEGASDR 14 1 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 IDDRDS(1)DEEGASDR;IDDRDS(1)DEEGASDR;IDDRDS(0.994)DEEGAS(0.006)DR;IDDRDS(1)DEEGASDR;IDDRDS(0.987)DEEGAS(0.013)DR 299.6 2.2914000000000004e-43 4093409000.0 1801666.0 1812622.0 1575994.0 1563215.0 1618758.0 1823097.0 1659436.0 1707130.0 2111195.0 1644232.0 True False 1791966.0304399116 1872954.027516863 1797880.2564145848 1761117.8587199573 1824897.2361696302 1697070.5954987216 1579162.7410188755 1834524.7092304907 1590919.280813633 1539295.706062163 1.1641467090323612 1.2167603795298483 1.167988872660429 1.1441062635231156 1.1855403929100115 1.1024981027460794 1.025899529765272 1.191794859172046 1.0335371394516093 1.0 20.553838976227176 1.3496456507538885 0.13332133494112355 0.8971068393820307 1.2923749978444121 0.5641006641724426 0.04877573624585191 4.583407913325952 0.5956643670164595 0.8194829238288674 0.7331259274952954 22.36895267785291 -1.3496456507538885 0.3952681584623814 IDDVVNTR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDDVVNTR 8 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 128.38 0.0026425 508830000.0 484290.0 529340.0 408680.0 492060.0 450500.0 532280.0 505870.0 495120.0 632710.0 551710.0 False True 481682.6364496768 546958.7619072133 466218.591689761 554354.7455479514 507868.50467730087 495484.7364523442 481399.1354889359 532068.3685684166 476787.09837963484 516499.3954573048 0.932590900756425 1.0589727049398383 0.9026507984137608 1.0732921479165136 0.9832896401120428 0.9593132940913622 0.9320420115162161 1.030143255244911 0.9231125971744673 1.0 18.978407134909027 3.001477617132625 24.999999836989925 0.9724928732478242 0.9950452977234233 0.03377047325777727 0.05565534288368211 202.39265831924698 3424153.8933777157 0.015166547198994879 0.017981094606327696 1003.4081337084757 -3.001477617132625 0.02255242447559913 IDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDEDGENTQIEDTEPMSPVLNSK 23 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK 201.66 1.4284e-24 429320000.0 416530.0 362160.0 334210.0 304860.0 294800.0 433260.0 397450.0 376530.0 544570.0 405900.0 True False 414287.4487608337 374214.27666965657 381263.86299460393 343455.24474200036 332341.03258350346 403309.7559843365 378223.8250935571 404628.58058059856 410368.02036414377 379995.1144915265 1.0902441451522185 0.9847870733032836 1.0033388547765283 0.903841211752366 0.8745929089857136 1.061355108536086 0.9953386521815167 1.0648257441994595 1.0799297272894137 1.0 18.53562134471894 IDEDGKK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDEDGKK 7 1 O75821;K7ENA8;K7ER90;K7EL20;K7EL60 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 ;;; 112.17 0.010285 2305210000.0 4392640.0 2941530.0 2630820.0 2274170.0 2519600.0 2713060.0 4035610.0 3964320.0 6737700.0 3971430.0 False True 4368990.514308189 3039437.047857568 3001216.5885026357 2562079.688824097 2840456.1251607738 2525512.548056282 3840392.1267726943 4260157.688809065 5077284.115554468 3717969.9372877106 1.1751010868838287 0.8174990920111802 0.8072191650619014 0.6891071557972723 0.7639803906625747 0.6792719119990153 1.0329271595924445 1.1458289767444663 1.3656065544355607 1.0 21.826083674304193 1.985526367959149 3.24103361332577 1.1800112113771433 0.812942727112862 0.506935809275993 0.15463630164056238 0.19630395148944496 4.051069642502623 0.07435938166050655 0.04377628016631275 96.72224492654037 -1.985526367959149 -0.3670684842642813 IDELEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDELEPR 7 0 Q14697;F5H6X6;Q14697-2 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 79.469 0.097493 0.0 658800.0 1058100.0 961260.0 1081400.0 994420.0 763970.0 984730.0 771830.0 743950.0 881130.0 False True 655253.0939995605 1093318.2188650423 1096597.0525782977 1218305.1291215585 1121053.4926108813 711158.5520919402 937094.8478660926 829427.873873326 560613.4909192672 824895.529026654 0.7943467638535207 1.3254020423108817 1.329376889546536 1.476920514479104 1.3590248136435927 0.8621195376474895 1.1360163983090437 1.005494447099283 0.6796175651246046 1.0 19.653851891614778 2.7402256372552594 24.99400980578792 0.9593058055570348 1.2770507005353813 0.38215546774082754 0.20184980253902984 165.31562798211755 2481604.7471919903 0.06402433996211873 0.06474663110774014 549.8264614402614 -2.7402256372552594 0.31774489497834646 IDENS(ph)DKEMEVEES(ph)PEKIK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDENSDKEMEVEESPEKIK 19 2 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 2 IDENS(1)DKEMEVEES(1)PEKIK;IDENS(1)DKEMEVEES(1)PEKIK 211.72 6.2102e-17 317670000.0 912330.0 445130.0 395000.0 314810.0 355110.0 753210.0 731060.0 653240.0 1552600.0 631590.0 True False 907418.1166493928 459945.8829632327 450612.56659845164 354664.9137218034 400331.1535981277 701142.3655656249 695695.8348795959 701988.085885507 1169982.5337741156 591281.3854685966 1.5346637640727596 0.7778798627301972 0.7620949647202855 0.5998242502437783 0.6770569198299066 1.1858015198803566 1.1765901176277513 1.1872318377301432 1.9787237726871656 1.0 19.173485333790573 2.13191738693112 1.438496043039774 1.4184993464940467 0.8576463360901392 0.2918589546199638 0.340524128271936 0.5051434530460459 1.9943330509058872 0.21297072311439785 0.11345710293566168 135.4931647831255 -2.13191738693112 -0.5608530104039076 IDENS(ph)DKEMEVEESPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDENSDKEMEVEESPEK 17 1 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 IDENS(1)DKEMEVEESPEK;IDENS(1)DKEMEVEESPEK;IDENS(1)DKEMEVEESPEK;IDENS(1)DKEMEVEESPEK 253.13 3.196e-27 1709540000.0 2890150.0 1646660.0 1441820.0 1307980.0 1483410.0 2276720.0 2105840.0 2217620.0 3709080.0 2057460.0 True False 2874589.7535258546 1701468.0826730083 1644815.7234758993 1473570.1338897904 1672313.4706400787 2119335.7052224064 2003972.4741099915 2383110.0652461885 2795026.9331256603 1926151.141319874 1.4924009294286602 0.8833512833822044 0.8539390747648221 0.7650334920654475 0.8682150817584046 1.100295641270474 1.0404025058681488 1.237239391096375 1.451094295336761 1.0 20.87728948241075 1.966366200859298 1.8490568818024287 1.2565649000820023 0.9608331094643637 0.1826774132006761 0.2165128900254588 0.5025717071956055 3.191782004992946 0.13327402979202785 0.06560395035807878 92.5478216250557 -1.966366200859298 -0.29573179061763855 IDEPLEGSEDR ddPTM_BT-474_Trastuzumab_2h_R1 7 IDEPLEGSEDR 11 0 P61978;P61978-2;S4R359;P61978-3 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;; 213.63 4.3191e-09 41299200000.0 3359810.0 3825180.0 3277650.0 3537690.0 3365420.0 3556520.0 3851960.0 3321280.0 4295210.0 3664770.0 False True 3341721.156269984 3952498.8039298584 3739114.6301554847 3985561.1912724753 3793986.288592861 3310666.1435475512 3665625.978883826 3569130.778718108 3236713.0483652693 3430881.241032551 0.9740124829457129 1.1520360298861065 1.0898408797822943 1.161672733992095 1.105834338775023 0.9649608689314993 1.06842112021943 1.0402956348451016 0.9434057377605862 1.0 21.7101477576101 2.7595970730704025 23.88549915784587 1.0141456045919166 1.1029855189957938 0.3820544406603681 0.05823925345964942 497.99731045795835 565441.8046295415 0.01733668617968806 0.01836625452456867 574.9063069708276 -2.7595970730704025 0.08883991440387717 IDESIHLQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 IDESIHLQLR 10 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ;; 228.64 1.9962e-09 919560000.0 540237.0 688190.0 685850.0 688880.0 647620.0 662330.0 698380.0 595250.0 771320.0 720150.0 False True 537328.4240179734 711095.9881303599 782411.7184849327 776092.1373675419 730090.5682555248 616544.686057116 664596.6913293201 639670.5776182553 581238.5211584772 674189.4104485653 0.7969992048087305 1.054742149772479 1.1605221119749756 1.1511485130731685 1.0829161018262898 0.9144977309075563 0.9857714776135942 0.9487995030842398 0.8621294137084649 1.0 19.362794441400997 2.7408191748309787 24.726493830745625 0.9435694622620562 1.0614109484897858 0.21677839360106155 0.10038266187531365 261.07151550424965 2858194.379015808 0.03241521214479415 0.03290787746006533 550.5784069097832 -2.7408191748309787 0.11784148622772961 IDEYMR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDEYMR 6 0 O75688;B8ZZF0;C9JIR6;A0A3B3IS24;O75688-5;O75688-4;O75688-2 O75688 PPM1B Protein phosphatase 1B 0 113.25 0.061180999999999985 95863000.0 118330.0 132550.0 110530.0 105190.0 92369.0 119740.0 121290.0 102950.0 147260.0 115490.0 False True 117692.92442769906 136961.84662183287 126091.6632560176 118507.04321462645 104131.64463604352 111462.65563764141 115422.73932720457 110632.65176950733 110969.74618290368 108119.32932403659 1.0885465639078296 1.266765595736859 1.166226835149129 1.0960763811201382 0.9631177448757394 1.0309225587552877 1.067549531141462 1.0232458197917436 1.0263636194997503 1.0 16.722264942255507 3.5740598032750817 3.1565725925130685 1.0239060310914119 1.1834603007315438 0.6755175900504238 0.047952247753503686 0.1375247134442724 2.610200332844033 0.012777461997559013 0.020626690524029365 3750.2464038173753 -3.5740598032750817 0.15955426964013197 IDFDSVSSIMASS(ph)Q ddPTM_BT-474_Trastuzumab_2h_R1 4 IDFDSVSSIMASSQ 14 0 Q9UBQ5;A0A087WVB9;K7ERF1;K7EK53 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K 1 IDFDSVSSIMAS(0.09)S(0.91)Q;IDFDSVSSIMAS(0.015)S(0.985)Q;IDFDSVSSIMAS(0.078)S(0.922)Q;IDFDSVSSIMAS(0.142)S(0.858)Q 198.16 2.3527e-08 81481000.0 180221.0 197177.0 172042.0 183541.0 184671.0 206747.0 201209.0 184748.0 221795.0 216565.0 True False 179250.71016043524 203739.91724898622 196264.01818412897 206777.2717811171 208187.75721922703 192455.0665200887 191475.75197697675 198534.833891335 167136.59415073413 202743.6362893755 0.8841249641226279 1.0049139937402953 0.9680403379172 1.0198952507983254 1.026852240738551 0.9492533035433873 0.944422993892069 0.9792407669356719 0.8243740578480129 1.0 17.629297106325264 IDFIPVSPAPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDFIPVSPAPSPTR 14 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 IDFIPVS(0.001)PAPS(0.949)PT(0.05)R 97.767 0.0032328 0.0 76850.0 101430.0 85801.0 92469.0 96375.0 94318.0 95970.0 95671.0 88625.0 91292.0 True False 76436.24813883772 104806.0362342703 97881.03500433864 104175.56591893992 108647.78499062135 87798.01866069039 91327.56445899767 102810.45582749446 66784.55626415748 85465.66640098664 0.8943503439172309 1.226294027154048 1.145267323431397 1.2189171430568437 1.2712448116986437 1.0272899324128693 1.068587753478786 1.2029445291531429 0.7814197101186647 1.0 16.383057350881582 1.2450264895866812 24.997553322068175 0.8907098315809777 1.1394062377125944 0.4035503233141837 0.11698325748888355 123.72305338498713 478336.7305974072 0.07866083513894495 0.027206920029541736 17.580308409488485 -1.2450264895866812 0.2486964061316167 IDFSSIAVPGTSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDFSSIAVPGTSSPR 15 0 Q5TDH0;Q5TDH0-3;Q5TDH0-2 Q5TDH0 DDI2 Protein DDI1 homolog 2 1 IDFSSIAVPGTS(0.011)S(0.989)PR;IDFSSIAVPGTS(0.001)S(0.999)PR 300.29 3.0532999999999996e-44 2840700000.0 2849800.0 3287000.0 2880100.0 2982300.0 2912400.0 2894600.0 2746500.0 2435000.0 2885900.0 2696300.0 True False 2834456.993442548 3396405.8079665373 3285593.045722028 3359858.8742178944 3283276.876852768 2694503.1151554775 2613641.302351122 2616712.064679463 2174708.614078784 2524219.825581433 1.1229041800230908 1.3455269519500759 1.3016271453161647 1.331048445213752 1.3007095672012214 1.0674597702816242 1.0354253919818934 1.036641911358384 0.8615369359036937 1.0 21.26740612444116 2.6078818058564215 2.7094138498857943 0.9942626210706635 1.2896846258868748 0.7842253347434256 0.07417800547299776 0.1270029449841026 1.815780957322313 0.026297363879453785 0.024242141509117524 405.39819047579624 -2.6078818058564215 0.2954220048162113 IDFVAHDDIPYSSAGSDDVYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDFVAHDDIPYSSAGSDDVYK 21 0 P49585;C9JEJ2;C9J050;H7C1T3;H7BZN1;Q9Y5K3-2;Q9Y5K3-4;Q9Y5K3-3;Q9Y5K3 P49585 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B 0 ; 222.79 3.7972e-25 1190670000.0 1505560.0 1385880.0 1299380.0 1131430.0 1240100.0 1521250.0 1418620.0 1344500.0 2018760.0 1478220.0 False True 1497454.2322434399 1432008.1780178484 1482321.4095865726 1274668.9219918686 1398019.3843514337 1416089.5681373116 1349995.93094533 1444833.4172326655 1521263.6479980892 1383878.7340321848 1.082070412253776 1.0347786571193487 1.0711353337062683 0.9210842616808531 1.0102181282011955 1.023275763484908 0.9755160605813119 1.0440462604861902 1.0992752548235265 1.0 20.400286097937983 -0.3048787971212765 6.777912334324474 0.9999999810066523 1.0255022864438448 0.025403544419617452 0.04979459641797341 0.0 0.0 0.04776098442838943 0.011257371988486425 0.4955884803112094 0.3048787971212765 0.025502305437192452 IDFYFDENPYFENK ddPTM_BT-474_Trastuzumab_2h_R1 6 IDFYFDENPYFENK 14 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 ;;;;; 315.13 1.7184e-55 7792740000.0 5221640.0 4813800.0 4298680.0 4227390.0 4103100.0 5103870.0 5538830.0 4995120.0 7130970.0 5308240.0 False True 5193527.270418738 4974024.422996449 4903896.779203627 4762577.140555942 4625605.464020941 4751051.480117658 5270895.632514646 5367881.2191054085 5373637.993602472 4969463.57858709 1.0450881042366658 1.000917773988527 0.9868060609869478 0.9583684567238605 0.93080578836561 0.9560491600319707 1.0606568594699832 1.0801731684351326 1.0813315981944065 1.0 22.244658699928824 2.227818699825356 24.26858649062728 1.0640890583856402 0.9777729163749606 0.511791578200089 0.035886174450052516 112.6202791903978 254433.8928128237 0.014027000144702428 0.010471270304346234 168.973538900584 -2.227818699825356 -0.08631614201067961 IDGATQS(ph)SPAEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDGATQSSPAEPK 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 IDGAT(0.002)QS(0.606)S(0.393)PAEPK 168.67 3.1267e-05 566910000.0 879800.0 641490.0 561190.0 536750.0 543020.0 832400.0 820760.0 716760.0 1100600.0 759070.0 True False 875063.2545549687 662841.6068611064 640200.6740490769 604702.4949657833 612170.3782682979 774858.1472588324 781056.703192321 770248.2708335326 829371.8772844214 710625.5027274782 1.231398607559616 0.9327579777492214 0.9008974088206781 0.8509439819494968 0.8614528692239499 1.090388881745477 1.099111557627074 1.083901813088911 1.167101200422977 1.0 19.43872993906746 2.7118711194007057 21.91350521524661 1.093329692469009 0.9453862495129485 0.27501573963894865 0.10685952896922456 199.99887562266827 164208.59524669536 0.03505559120599608 0.03306848217376821 515.0757687626913 -2.7118711194007057 -0.14794344295606054 IDGATQSS(ph)PAEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDGATQSSPAEPK 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 IDGATQS(0.078)S(0.922)PAEPK 244.0 8.5811e-12 0.0 1251800.0 944680.0 851320.0 850150.0 794830.0 1246500.0 1201300.0 1102500.0 1730300.0 1197200.0 True False 1245060.4478880558 976123.1027288798 971178.4561939092 957778.9028321564 896046.8891734954 1160332.38894538 1143188.529588351 1184774.1483815634 1303890.7498321207 1120793.6710255123 1.1108739102254575 0.870921319385877 0.8665095827185506 0.854554167811994 0.7994753292580815 1.035277427899544 1.0199812500211103 1.057084973809238 1.1633637693894872 1.0 20.096089283519348 2.5995971637582467 6.392828980805812 1.0582413127742147 0.8947378516869183 0.44540597502062185 0.0864641738489266 0.22264721241952604 10.740282813618272 0.028318646710584688 0.026610987175522738 397.7380715933025 -2.5995971637582467 -0.1635034610872964 IDGDKDGFVTVDELK ddPTM_BT-474_Trastuzumab_2h_R1 3 IDGDKDGFVTVDELK 15 1 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-9;O43852-13;O43852-14;O43852-11 O43852 CALU Calumenin 0 ;; 226.74 7.5201e-13 2370630000.0 5172750.0 3839710.0 3329110.0 2727230.0 2817990.0 4784760.0 4655010.0 4672190.0 7159170.0 4133840.0 False True 5144900.488746552 3967512.4261962925 3797819.7508571427 3072497.0383708077 3176844.322964681 4454000.803313522 4429829.382434919 5020852.542700097 5394888.481463112 3870014.7920415206 1.3294265694608625 1.025193090826234 0.981345021902024 0.793923848738055 0.8208868683131889 1.1509002013307383 1.144654380015453 1.2973729591486867 1.3940227031063066 1.0 21.883907649999845 2.3816303103773406 2.6206067263269626 1.243978445044556 0.9820214980195895 0.2637692583609449 0.16803128103098303 0.3365461752347282 4.724270055536477 0.06817693311567738 0.05411479668819171 240.78548892937584 -2.3816303103773406 -0.2619569470249664 IDGDKDGFVTVDELKDWIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDGDKDGFVTVDELKDWIK 19 2 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-13;O43852-14;O43852-11 O43852 CALU Calumenin 0 163.91 1.3939e-11 774230000.0 1584100.0 1320300.0 1151800.0 1112700.0 1148500.0 1720800.0 1768200.0 1688300.0 2923000.0 1470800.0 False True 1575571.3816100557 1364245.3873617956 1313963.42837493 1253567.7059122997 1294754.6673071713 1601845.1463274881 1682665.4108200446 1814289.5190136887 2202665.816193313 1376932.2847847696 1.1442620664939493 0.9907861137666932 0.9542687341232018 0.9104062122475738 0.9403183305485181 1.1633434439935983 1.2220393329531558 1.317631621439745 1.5996907331849037 1.0 20.393026181224545 2.3541220021007287 1.872643417351916 1.3275303519944364 0.9828923149380168 0.4644510660363639 0.14937505514203608 0.2715105123876834 1.9423718906656045 0.06638230517477853 0.047627517511594754 226.0070580572483 -2.3541220021007287 -0.3446380370564196 IDGNLVVRPYTPISSDDDKGFVDLVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDGNLVVRPYTPISSDDDKGFVDLVIK 27 2 P00387-2;P00387;P00387-3;B1AHF3 P00387-2 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 118.57 0.00020416 168260000.0 124660.0 115960.0 114920.0 92551.0 131500.0 211970.0 146310.0 110230.0 215510.0 134790.0 False True 123988.84441102801 119819.65850069972 131099.73709745344 104267.94711053207 148245.74553843544 197317.01282370818 139232.4263415229 118455.92233659835 162400.44818604903 126187.58680047526 0.9825756047389682 0.949536016487546 1.038927365373467 0.8262932175365079 1.1748045057144805 1.5636800562301032 1.1033765671553242 0.9387288032054847 1.2869764158564398 1.0 16.94521047237848 3.214981538396246 24.64080538251664 1.1712849119019664 0.9557471620855036 0.30873730971126767 0.16728386342332352 277.2347086268191 289717.2013183666 0.05227619603452503 0.06251814558070987 1640.5200341726213 -3.214981538396246 -0.2155377498164628 IDGVEQLNNILVIGMTNRPDLIDEALLRPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDGVEQLNNILVIGMTNRPDLIDEALLRPGR 31 2 I3L0N3;P46459;P46459-2 I3L0N3 NSF Vesicle-fusing ATPase 0 ; 225.84 2.0127999999999997e-35 1095610000.0 102839.0 126762.0 120524.0 153654.0 114921.0 138734.0 130456.0 118398.0 125752.0 144154.0 False True 102285.32625048707 130981.19654075285 137492.73158661232 173106.58064550054 129555.5081598671 129143.64512470787 124145.34488968429 127233.45997286204 94762.10459046933 134953.9683035515 0.7579275180735482 0.9705620233866507 1.0188120684035789 1.2827083398995167 0.9599977665603604 0.956945888647198 0.919908813725615 0.9427915427183012 0.7021809420032856 1.0 17.042107874121765 2.101021341298484 1.4725019678591251 0.8714862883876345 1.0086559630343404 0.11805443579878194 0.1385799712708738 0.857505914705332 3.5262592166722055 0.09060001159629767 0.04718639087493052 126.18895425157825 -2.101021341298484 0.13716967464670582 IDHILDAL ddPTM_BT-474_Trastuzumab_2h_R1 1 IDHILDAL 8 0 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 97.602 0.01888 10763000.0 32890.0 54063.0 80940.0 37155.0 26095.0 42993.0 50434.0 22111.0 79404.0 38545.0 False True 32712.92389442253 55862.45427322639 92335.64845690814 41858.81919041202 29418.043572817252 40020.995104636 47994.31474341032 23761.03509738298 59835.94815908793 36085.02509996524 0.9065512301515356 1.548078576042897 2.558835644456766 1.1600052674052965 0.8152424306570758 1.1090748861547708 1.3300341238631022 0.6584735643541473 1.6581933362475496 1.0 15.13911263782098 3.5061639569007883 24.99247609496189 1.0599420791261795 1.6922763893808246 0.24639785014220594 0.45243764531117414 875.882144772924 753731.5614547657 0.11864985778479657 0.1834409868021615 3207.4799989358735 -3.5061639569007883 0.632334310254645 IDHYLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDHYLGK 7 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 81.635 0.026668 2336900000.0 2243500.0 2235200.0 2205970.0 2075040.0 1809850.0 2279100.0 2446900.0 2105410.0 3083400.0 2234010.0 False True 2231421.245276283 2309597.2807930657 2516551.4013650315 2337739.8512413586 2040323.6696786098 2121551.1814243216 2328534.0989342663 2262526.385255355 2323537.3854431966 2091433.5691678142 1.0669338381922262 1.1043130008246254 1.203266237314137 1.1177691157417684 0.9755622649255166 1.01440046325186 1.1133674687361907 1.0818064788716282 1.1109783354810245 1.0 20.99606074327828 1.3810048934824593 0.010221650036955215 2.6036775921387044e-07 2.1340967736334115 0.149659844345584 0.059086228304306404 2087.7013306035687 20.53560572978327 2150.8072851407933 2133.123314005914 24.043898917015415 -1.3810048934824593 2.134096513265652 IDIIPNPQER ddPTM_BT-474_Trastuzumab_2h_R1 7 IDIIPNPQER 10 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ;;;;;; 125.56 0.00094396 5376370000.0 896375.0 1124360.0 1052920.0 1030710.0 1062400.0 1187400.0 1076460.0 988798.0 1104640.0 1111960.0 False True 891549.0165966238 1161783.6429100272 1201161.9838552976 1161197.7803189235 1197690.3426618539 1105317.8328389453 1024387.5173234631 1062587.127774505 832416.2734176483 1040993.7608031495 0.8564403074892343 1.1160332430942579 1.1538608866671543 1.1154704514492324 1.150525956791335 1.061791025516011 0.9840477012399437 1.020743032076096 0.7996361791596338 1.0 19.989529991193656 1.8020159421403381 1.512342054588825 0.9165890541795906 1.0853473672023137 0.29656805673934694 0.09625127514818815 0.4550125178479861 1.9825236192257718 0.07130079807857993 0.02925773759572177 63.38929798587364 -1.8020159421403381 0.16875831302272315 IDILDSALLRPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDILDSALLRPGR 13 1 P62195-2;P62195 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ; 217.12 2.4018e-11 4981800000.0 2128100.0 2472700.0 2231980.0 2254630.0 2115610.0 2317000.0 2394560.0 2095610.0 2787900.0 2346710.0 False True 2116642.546054138 2555002.3247212847 2546223.3832820556 2540065.9268275755 2385020.393297105 2156831.243631325 2278725.9846924827 2251995.0594919594 2100859.4009460644 2196940.958680489 0.9634498995937608 1.1629817882114828 1.1589858039750645 1.1561830629955443 1.0856096900890677 0.9817429253659805 1.0372267746608514 1.0250594357549492 0.9562657533627429 1.0 21.067064668141615 2.890920124917981 4.457012083430572 1.0070521848300031 1.1180503549296106 0.4508136354352118 0.05803645338065424 0.2108540660163937 6.863168845076595 0.017884479050602874 0.019209514816370513 777.8934683588767 -2.890920124917981 0.11099817009960744 IDIS(ph)PSTFR ddPTM_BT-474_Trastuzumab_2h_R1 15 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 IDIS(0.714)PS(0.259)T(0.027)FR;IDIS(0.931)PS(0.061)T(0.008)FR;IDIS(0.998)PS(0.001)TFR;IDIS(0.938)PS(0.061)TFR;IDIS(0.5)PS(0.5)TFR;IDIS(0.947)PS(0.044)T(0.009)FR;IDIS(0.973)PS(0.026)T(0.001)FR;IDIS(0.992)PS(0.008)TFR;IDIS(0.879)PS(0.119)T(0.003)FR;IDIS(0.788)PS(0.199)T(0.013)FR;IDIS(0.868)PS(0.131)T(0.001)FR;IDIS(0.97)PS(0.024)T(0.006)FR;IDIS(0.703)PS(0.292)T(0.005)FR;IDIS(0.863)PS(0.119)T(0.019)FR;IDIS(0.446)PS(0.213)T(0.341)FR 172.61 5.8803e-05 136887953800.0 14689221.0 16189977.0 14539891.0 13971114.0 14602867.0 15790556.0 15343760.0 14326095.0 16831843.0 15787826.0 True False 14610135.866261864 16728850.59739724 16586981.269801848 15739855.59990942 16462455.554476146 14698992.030690575 14601523.709944671 15395180.955336373 12683860.827790864 14780233.428042118 0.9884915510564581 1.1318394042179378 1.1222408191694617 1.064926049817768 1.11381566702745 0.9945033752175114 0.9879088703864185 1.0416060768111777 0.8581637691679574 1.0 23.817165718730745 2.681861869775948 6.359976588680776 0.9844926316625076 1.0878724417875756 0.45963224820645265 0.05808677687951913 0.21880863980979856 19.369942355913576 0.018401180950574175 0.017415065895842498 480.68643864219325 -2.681861869775948 0.10337981012506803 IDIS(ph)PSTLR ddPTM_BT-474_Trastuzumab_2h_R1 15 IDISPSTLR 9 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 IDIS(0.847)PS(0.151)T(0.002)LR;IDIS(1)PSTLR;IDIS(0.698)PS(0.302)TLR;IDIS(0.992)PS(0.003)T(0.005)LR;IDIS(0.98)PS(0.018)T(0.001)LR;IDIS(0.971)PS(0.028)T(0.001)LR;IDIS(0.963)PS(0.037)TLR;IDIS(0.985)PS(0.012)T(0.003)LR;IDIS(0.988)PS(0.012)TLR;IDIS(0.769)PS(0.23)T(0.001)LR;IDIS(0.945)PS(0.05)T(0.005)LR;IDIS(0.771)PS(0.229)TLR;IDIS(0.988)PS(0.012)TLR;IDIS(0.996)PS(0.004)TLR;IDIS(0.992)PS(0.008)TLR 209.8 8.2157e-06 137852846000.0 8202689.0 8769342.0 7840834.0 7876180.0 7432333.0 8260458.0 7957905.0 7642594.0 9382759.0 8065090.0 True False 8158526.63382843 9061224.247290814 8944755.273449123 8873303.580437072 8378796.552660954 7689431.98148656 7572950.7330007395 8212923.172585987 7070503.7669791905 7550369.051329056 1.080546735976081 1.2001034897354865 1.1846778896025778 1.1752145517807697 1.1097201336385105 1.018418030855462 1.0029908050213399 1.08775122338428 0.9364447908323903 1.0 22.84811573237247 2.908079793975347 2.856821476130166 1.0195396293824133 1.1642691230216713 0.7055144600987298 0.046085324668690496 0.1553453511508133 2.466756043949364 0.014796311900520024 0.016260038659908087 809.2445699818544 -2.908079793975347 0.14472949363925802 IDIS(ph)PSTLRK ddPTM_BT-474_Trastuzumab_2h_R1 6 IDISPSTLRK 10 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 IDIS(0.971)PS(0.029)TLRK;IDIS(0.78)PS(0.11)T(0.11)LRK;IDIS(0.999)PS(0.001)TLRK;IDIS(1)PSTLRK;IDIS(0.992)PS(0.008)TLRK;IDIS(0.795)PS(0.2)T(0.005)LRK 152.4 1.1086e-05 5210030000.0 5751150.0 7844840.0 6730610.0 7657150.0 7609410.0 7096260.0 7917950.0 7673130.0 12331840.0 8932150.0 True False 5720186.447412836 8105950.757094082 7678221.384489139 8626544.404894724 8578423.258993354 6605712.248999233 7534928.508993662 8245737.923964653 9292823.270189997 8362092.539801644 0.6840616054158765 0.9693686979080433 0.918217700646407 1.0316250823384638 1.0258704048253502 0.7899592377813994 0.9010816937422217 0.9860854666121943 1.1113035673736313 1.0 22.995432578500793 4.739220797225654 24.219775155786746 0.9642071875947167 0.6840614865273037 0.518380386324576 0.08260357482104391 30.057950189713925 1102350.2497299116 0.020181439309834154 0.12071470946169953 54855.57822124017 -4.739220797225654 -0.280145701067413 IDISPS(ph)TFR ddPTM_BT-474_Trastuzumab_2h_R1 3 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 IDIS(0.032)PS(0.928)T(0.04)FR;IDIS(0.026)PS(0.969)T(0.004)FR;IDIS(0.331)PS(0.662)T(0.007)FR 203.52 1.8966e-05 18337190000.0 1789980.0 2096630.0 1771010.0 1832040.0 1933130.0 2007470.0 1852630.0 1835940.0 2176330.0 1841420.0 True False 1780342.9465654744 2166415.062110402 2020352.8141051282 2063976.076156705 2179302.646940801 1868698.3239760788 1763011.209166126 1972947.1655144212 1640002.6328279136 1723898.999081024 1.0327420269485275 1.2566948894716423 1.1719670439985972 1.1972720427687291 1.2641707246785012 1.0839952485454452 1.0226882259958108 1.1444679569778506 0.9513333633247459 1.0 20.71724382066915 2.5614967153332127 6.281761689686028 1.0520710204385275 1.188169677190836 0.4765219948741837 0.07567999193308013 0.2215889027071417 13.493514858753473 0.023819007690847202 0.02231437362359072 364.3314945370888 -2.5614967153332127 0.1360986567523086 IDISPS(ph)TLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDISPSTLR 9 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 IDIS(0.263)PS(0.725)T(0.011)LR;IDIS(0.216)PS(0.78)T(0.004)LR 160.91 6.8113e-05 49366400000.0 3127400.0 3567000.0 3247800.0 3230400.0 2970500.0 3456200.0 3235900.0 3138700.0 3834900.0 3231500.0 True False 3110562.4258868024 3685725.438702963 3705062.0096163317 3639368.3087796215 3348775.5674670897 3217281.029019674 3079367.1546615665 3372925.73199566 2889840.2800272796 3025262.9033736587 1.0281957387630745 1.2183157485561937 1.2247074478996807 1.2029924092617326 1.10693704131719 1.0634715500037646 1.0178841485900525 1.1149198729916334 0.9552360810707192 1.0 21.52862909118655 2.923629157238736 2.5513406224199064 1.0415188471401804 1.175545388953113 0.4937463347349781 0.06527546368187245 0.25370159120307567 3.2556622891105387 0.021259556137623033 0.023638807394183534 838.7434800984762 -2.923629157238736 0.1340265418129325 IDIYAER ddPTM_BT-474_Trastuzumab_2h_R1 1 IDIYAER 7 0 Q9Y6X9 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 0 101.41 0.02112 93437000.0 96495.0 113640.0 103690.0 113270.0 115090.0 107950.0 100510.0 106500.0 129070.0 116760.0 False True 95975.48164160246 117422.43870316927 118288.65071036336 127609.97038616517 129746.02930812567 100487.67058696662 95647.94731451357 114447.5707960421 97262.42794939152 109308.27683673477 0.8780257490011807 1.074231907237491 1.0821563941314514 1.1674319098156327 1.1869735125540142 0.9193052300793031 0.8750293214975425 1.0470165124548023 0.8897992975835197 1.0 16.738043120636153 2.7170654795786384 24.926501733109202 0.9513075679524853 1.0827932658540642 0.3434986614667368 0.09065187054383704 944.82515512893 1095650.4955263352 0.030311959507064546 0.02860373174466993 521.2732987555627 -2.7170654795786384 0.13148569790157894 IDIYHYELDIKPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDIYHYELDIKPEK 14 1 Q9UKV8-2;Q9UKV8;E5RJY2 Q9UKV8-2 AGO2 Protein argonaute-2 0 88.075 0.0040196 255960000.0 135450.0 138550.0 127040.0 121020.0 116900.0 176100.0 129310.0 138180.0 240010.0 157040.0 False True 134720.75224990988 143161.55299475635 144926.12774852483 136341.1195915397 131786.52207941524 163926.62149481062 123054.78128782948 148491.69326382247 180862.75146922926 147017.57275129174 0.9163581586115269 0.9737717084810087 0.9857741835644029 0.9273797481487924 0.8963997950255734 1.1150137934335493 0.8370072977330412 1.0100268320646573 1.230211790907425 1.0 17.165629082600056 1.448329327075726 9.40637471806781 1.1172786301684206 0.954062914089549 0.36885710894696244 0.08542339416838202 0.17746355460337804 45.54586459160067 0.04490543371750278 0.019503125216907405 28.075618152220972 -1.448329327075726 -0.16321571607887153 IDKDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDKDKR 6 2 P60983;G3V4P8 P60983 GMFB Glia maturation factor beta 0 80.18 0.036668 859680000.0 2526500.0 1939500.0 1887200.0 1731800.0 1656100.0 1474500.0 2098700.0 2419500.0 3477200.0 2556900.0 False True 2512897.6047205403 2004055.08504749 2152901.356163539 1951045.7024345468 1866994.518526254 1372571.2855996522 1997177.8631874365 2600055.3759720563 2620290.6520928466 2393716.4529277734 1.049789168490276 0.8372149017885199 0.8993969831014481 0.8150696796390431 0.7799564214227288 0.5734059620640738 0.8343418706692151 1.0862002359518848 1.0946537334812352 1.0 21.1908208376531 1.7567336250895922 5.835691850320132 1.0665980539499775 0.8174611373748506 0.4699265651349679 0.11313057333372943 0.1459800804713529 12.541172209344767 0.058851222329894384 0.031323778618840926 57.11282272099251 -1.7567336250895922 -0.24913691657512693 IDKEACR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDKEACR 7 1 Q14019 Q14019 COTL1 Coactosin-like protein 0 78.49600000000002 0.032082 134030000.0 169360.0 185950.0 177590.0 160410.0 138960.0 181460.0 191130.0 166920.0 284540.0 195090.0 False True 168448.18457766477 192139.2333408514 202593.1283600484 180717.88955279224 156655.7323195509 168916.0973108938 181884.311712496 179376.41800258544 214418.92964065872 182639.18917504777 0.9223003307149933 1.0520153654246596 1.1092533276956025 0.98948035396492 0.8577333978930809 0.9248622821523738 0.9958668374188397 0.9821354267547959 1.1740028556256463 1.0 17.478636834295298 1.303602675456397 15.949093902434033 1.0869864577921238 0.9812788035723532 0.24012426798547337 0.07663236062740446 3.221257489403057 788.1870654192198 0.05330345114723889 0.019476699009252942 20.118827892468087 -1.303602675456397 -0.10570765421977057 IDKELINR ddPTM_BT-474_Trastuzumab_2h_R1 4 IDKELINR 8 1 P23381;P23381-2;G3V277;G3V5U1;G3V3Y5;G3V3H8;G3V456;G3V423;G3V3P2;G3V227;G3V3X0;G3V2Y7 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS 0 ;;; 105.4 0.0040091 1669540000.0 1747110.0 2019910.0 1745620.0 1875260.0 2047520.0 1934390.0 1913410.0 1954470.0 2744620.0 2059800.0 False True 1737703.7538821676 2087141.4832886204 1991388.122798964 2112667.723725263 2308259.535398155 1800670.1723642626 1820851.0483639757 2100322.475997564 2068245.1770237754 1928341.8005165 0.9011388714473386 1.08235038141557 1.0326945784536627 1.0955877859202099 1.1970178392543767 0.9337920133671112 0.9442574173708556 1.0891857840943964 1.0725511299240638 1.0 20.87892936269966 4.746116170126241 24.217057674145916 1.051198635668639 0.9011387583707747 0.2677224572863973 0.07368002642096308 845.3051056019386 2709267.8962254035 0.018073532591622785 0.18863627371976688 55733.4811375516 -4.746116170126241 -0.15005987729786419 IDKTDYMVGSYGPR ddPTM_BT-474_Trastuzumab_2h_R1 4 IDKTDYMVGSYGPR 14 1 P52565;J3KTF8;J3QQX2 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ;;; 151.38 6.3429e-06 13965250000.0 5796720.0 6442310.0 5958280.0 5383420.0 5447600.0 5922440.0 6666670.0 5784970.0 7640400.0 5931520.0 False True 5765511.103596141 6656738.39389136 6797154.033701841 6064960.420025509 6141319.569545088 5513035.662724172 6344177.702947438 6216673.836882447 5757525.79611475 5552965.315370241 1.0382760878476203 1.1987718301545929 1.2240584350288966 1.0922021074466464 1.105953165698032 0.9928093099131113 1.1424846622735376 1.1195232607837662 1.0368380620311637 1.0 22.404826953998707 3.548651935307635 9.638062066592994 1.0789881728180688 1.1583825729794561 0.25252195292523016 0.0649732710329401 0.7283441693871098 94.66882794641609 0.017158762224052784 0.026573794395989565 3537.137440793053 -3.548651935307635 0.07939440016138732 IDKVNEIVETNRPDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDKVNEIVETNRPDSK 16 2 Q15008;Q15008-4;Q15008-3;Q15008-2 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 181.72 1.2714e-09 2158600000.0 4215900.0 3441000.0 3049700.0 2884400.0 2994800.0 4201100.0 4330800.0 4068100.0 6140200.0 4329500.0 False True 4193202.062830525 3555531.604871576 3479071.251532405 3249564.744255806 3376170.0284297024 3910687.845325664 4121302.6587373936 4371682.279393234 4627029.984464655 4053187.6033285656 1.0345442829705136 0.8772186123217431 0.8583543600783039 0.8017306530759131 0.8329666323999211 0.9648425456828404 1.0168053053732056 1.078578814314717 1.1415780460457436 1.0 21.950625521942584 2.2940179921995756 2.054176115974294 1.0766085940973336 0.8761928405426784 0.6114261017446623 0.06708130162592169 0.2088460747308238 1.7988270557507389 0.03151610734285395 0.02196465327770606 196.79678181115898 -2.2940179921995756 -0.20041575355465513 IDLEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDLEVR 6 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 100.82 0.086601 246480000.0 295270.0 365140.0 361550.0 329290.0 344110.0 343580.0 389830.0 294910.0 410750.0 361610.0 False True 293680.29912758066 377293.46416820877 412453.0973510638 370978.08023713523 387930.3688002352 319829.1233003241 370972.43360478367 316917.68172263657 309526.16626801394 338531.74021010305 0.8675118585492568 1.1144995264965378 1.2183587190231644 1.095844306967775 1.145920227626142 0.9447537270857629 1.09582762719545 0.9361535244108805 0.9143194847133467 1.0 18.36893157942461 2.118091317980157 1.2242729563274908 0.9482452243708231 1.0912132594008837 0.20855788531966657 0.09801035129080266 0.6677972954299635 1.884362396472139 0.06814454442766732 0.034873796082455305 131.24758409160523 -2.118091317980157 0.1429680350300605 IDLFER ddPTM_BT-474_Trastuzumab_2h_R1 2 IDLFER 6 0 Q9UHG3;F8W8W4 Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 0 ; 155.73 0.022892 572820000.0 398090.0 510470.0 506680.0 444960.0 529680.0 564550.0 486970.0 458590.0 616930.0 480610.0 False True 395946.7276719572 527460.6853643684 578016.1398584903 501291.8903772231 597131.608340672 525523.9873077538 463413.4006939477 492812.3144728349 464895.8679384678 449937.0583290778 0.8800047036409417 1.1722988262473613 1.2846599966783292 1.1141378134952047 1.327144757887309 1.1679944507335795 1.02995161682151 1.0952916754689692 1.033246449325473 1.0 18.77936367146222 2.2459371781541067 24.281182099021912 1.0520481580187406 1.169861984718506 0.19676912675961145 0.11422306476413858 195.0489556953486 642037.0383990321 0.04014786187972946 0.03293782923653897 176.17211903478054 -2.2459371781541067 0.11781382669976548 IDLGERPVVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDLGERPVVQR 11 1 Q8TC07-2;Q8TC07-3;Q8TC07;C9JA93 Q8TC07-2 TBC1D15 TBC1 domain family member 15 0 ; 163.12 2.2187e-05 1150920000.0 228930.0 299780.0 246240.0 297890.0 245930.0 302350.0 249140.0 245300.0 313100.0 288340.0 False True 227697.46631651433 309757.99607916345 280908.45164355123 335602.84345664986 277247.72775868734 281449.256155344 237088.14639277593 263605.53160816093 235940.70032505214 269937.8943397065 0.8435179761384882 1.1475157900185176 1.0406410420096064 1.243259470025748 1.0270796860028168 1.0426444825162298 0.8783062747552204 0.9765414087302002 0.8740554967363336 1.0 18.04226799343669 2.3733183823735295 5.377856928944754 0.9338389890522206 1.0706986206301101 0.26517490060816107 0.1015386464715056 0.2627022654898537 11.615962558515495 0.034475146445624 0.02862730624700947 236.22093401533218 -2.3733183823735295 0.1368596315778895 IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR 31 0 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3;H0YIN7 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;; 194.7 9.7786e-20 2027110000.0 400830.0 482864.0 450206.0 457130.0 442830.0 571473.0 546911.0 414965.0 595374.0 482772.0 False True 398671.9758163995 498935.83634254773 513591.0915392976 515002.61112940474 499221.7756409522 531968.4166127424 520454.82552709134 445931.79544957454 448652.0553028668 451961.0776380965 0.8820936039444358 1.1039354073362613 1.136361330544819 1.13948443043095 1.1045680708830845 1.1770226307821818 1.1515478904664453 0.9866597313644121 0.992678523662873 1.0 18.785839009209248 1.6752913692302802 6.9502054751591515 0.992151666922439 1.1054192965116905 0.2813152181227345 0.07711737251232868 0.161304677929 15.318452423695467 0.039331603004713334 0.020142571476610787 47.34688038074366 -1.6752913692302802 0.11326762958925152 IDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDLLDR 6 0 P54577;A0A0C4DGZ5 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase 0 ; 100.74 0.086812 351310000.0 286840.0 291810.0 253270.0 248650.0 266320.0 294840.0 272320.0 266760.0 332050.0 279340.0 False True 285295.6853109198 301522.71944712976 288928.21453769587 280129.06450534135 300234.27339768904 274458.40477870515 259146.8412365769 286666.9857798328 250220.72674204264 261512.2820449939 1.0909456453820932 1.1529963988278453 1.104836118129186 1.0711889411646998 1.1480694942887346 1.0495048363789041 0.9909547620864323 1.0961893779448224 0.956822084168848 1.0 17.99651917933848 2.276669380607536 0.6467041089000328 0.9976586137781202 1.12218472448882 0.5393578433236896 0.04268414569323874 0.6253166049986125 0.5164998321470339 0.03649602720911872 0.025934162987741427 189.09035648599718 -2.276669380607536 0.12452611071069974 IDLMPHDLITQLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDLMPHDLITQLLR 14 0 F2Z2B9;Q9BSJ2-3;Q9BSJ2;Q9BSJ2-4;B3KTU7 F2Z2B9 TUBGCP2 Gamma-tubulin complex component 2 0 ; 139.58 1.0181e-05 115387000.0 166348.0 193586.0 188618.0 179319.0 173169.0 209295.0 203859.0 168125.0 241557.0 214908.0 False True 165452.40085100033 200029.39298479183 215173.77490295388 202020.76701400883 195221.04569692243 194826.92927743567 193997.561352994 180671.34122145158 182028.51404796736 201192.38744800436 0.8223591506103054 0.994219490717495 1.069492626596336 1.0041173504450736 0.9703202401103513 0.9683613368710893 0.964239073921871 0.8980028693587814 0.9047485163672524 1.0 17.618216193105177 1.9238403319460429 5.8492963002161975 0.9241517969583948 0.9775189720642817 0.05297413318160005 0.06362066074338975 0.50308962285961 29.517800102398397 0.028387659890438694 0.0172870020291402 83.91514163853049 -1.9238403319460429 0.053367175105886955 IDLPEVQIEHDPELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDLPEVQIEHDPELEK 16 0 Q14966;Q14966-3;Q14966-4;Q14966-5 Q14966 ZNF638 Zinc finger protein 638 0 171.09 5.0464e-09 126170000.0 370820.0 304270.0 269190.0 262420.0 262110.0 342910.0 335470.0 326920.0 495360.0 382980.0 False True 368823.5463219747 314397.44301490113 307089.61215857527 295642.3450934711 295488.15485231363 319205.4388233136 319242.03448014957 351316.4304661234 373285.1654839279 358537.88851432607 1.028687784853839 0.87688764029283 0.8565053289934375 0.8245776933604554 0.8241476405094265 0.8902976478887786 0.890399717036861 0.979858591575562 1.041131711436998 1.0 18.451766058310827 1.6574822424252547 2.6175622531129155 1.0204412688077307 0.8771224823455459 0.5174492665040881 0.054871493657360236 0.18936411258036276 2.9523392162896087 0.03742821607972456 0.015453643151113106 45.44459552948428 -1.6574822424252547 -0.14331878646218477 IDLPEVQIEHDPELEKES(ph)PGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDLPEVQIEHDPELEKESPGLK 22 1 Q14966;Q14966-3;Q14966-5 Q14966 ZNF638 Zinc finger protein 638 1 IDLPEVQIEHDPELEKES(1)PGLK 185.68 2.0917e-17 329620000.0 299580.0 186780.0 150350.0 141040.0 163240.0 245670.0 242390.0 213910.0 374270.0 229410.0 True False 297967.094566467 192996.8593891055 171517.9731343728 158895.64953884293 184027.64640071633 228687.41114497563 230664.6696802799 229873.0504129707 282036.17346105794 214768.85739221764 1.3873850156138332 0.8986259075572048 0.7986165928197927 0.739844926625757 0.8568637400935614 1.064807132289853 1.0740135813035165 1.0703276685649508 1.313207961739046 1.0 17.7124252845984 2.5857519205533768 4.314520431456936 1.109227200009381 0.9162704029884889 0.1766020168595791 0.180946826714217 0.39358688840840295 12.261826724721226 0.06205462607004234 0.057693868493737796 385.2582260408647 -2.5857519205533768 -0.19295679702089208 IDMNLTDLLGELQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDMNLTDLLGELQR 14 0 F5H365;Q15436;Q15436-2;A0A2R8YFH5;Q15437;Q5QPE2 F5H365;A0A2R8YFH5 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B 0 ; 139.89 2.3494e-05 161558000.0 199127.0 268450.0 268680.0 323800.0 279530.0 320510.0 364170.0 264340.0 294400.0 346790.0 False True 198054.92235708938 277385.1959685481 306507.80859157495 364793.04680003796 315126.48859588435 298353.89809938543 346553.7058355028 284066.39309132216 221849.06475789004 324657.5652981433 0.610042529504 0.8543931379323212 0.944095691440608 1.1236240451228572 0.9706426779443558 0.9189802733393803 1.0674438019556132 0.8749723507303919 0.683332496977728 1.0 18.308559302440273 4.693465960598546 2.3833933722525678 0.9511290930129996 0.5496068369090319 0.45466504575148026 0.11171164126860217 0.45574542240747 3.3858213691703756 0.02869509712381907 0.3619809321296914 49370.32209568418 -4.693465960598546 -0.40152225610396775 IDNSQVESGSLEDDWDFLPPKK ddPTM_BT-474_Trastuzumab_2h_R1 5 IDNSQVESGSLEDDWDFLPPKK 22 1 P27797;K7EJB9 P27797 CALR Calreticulin 0 ;;;; 267.77 1.2130999999999999e-37 2347370000.0 3466540.0 3226100.0 2977230.0 2576140.0 2778120.0 3964580.0 4154610.0 3885800.0 5488590.0 3855250.0 False True 3447876.533808797 3333478.7882813667 3396398.105452936 2902279.0598624144 3131897.1147926827 3690517.916217473 3953635.642148554 4175778.127692585 4136000.537837995 3609204.64435442 0.9553009245962335 0.9236048151205978 0.9410378296962575 0.8041325848347806 0.8677527110278023 1.0225294157232798 1.0954312741265306 1.1569801491374032 1.1459589980046154 1.0 21.783249516667098 2.4821748023231587 2.8056403098246676 1.1171657927537624 0.8975214869319508 0.7327962200254381 0.05708699479551704 0.1306507127591959 2.0930212462443416 0.02170327487270528 0.01859143615046955 303.5112562756639 -2.4821748023231587 -0.2196443058218116 IDPWSFVSAGPRPS(ph)PLPS(ph)PQPAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDPWSFVSAGPRPSPLPSPQPAPR 24 1 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 2 IDPWS(0.001)FVS(0.002)AGPRPS(0.997)PLPS(1)PQPAPR;IDPWS(0.003)FVS(0.004)AGPRPS(0.992)PLPS(1)PQPAPR 80.79 0.009612700000000002 250340000.0 304870.0 253931.0 236870.0 249486.0 195820.0 294030.0 216450.0 242773.0 331910.0 270740.0 True False 303228.61379424157 262382.9398304687 270219.2370890518 281070.90201962413 220756.516283927 273704.3981721702 205979.4865807029 260889.95403631512 250115.2278661385 253461.14140782438 1.1963514884766508 1.0351998668241178 1.066117021284392 1.1089309408868124 0.8709678929786127 1.0798672989946574 0.8126669257331147 1.02930947358332 0.9867991064701227 1.0 17.951405056397487 7.53505512947884 0.4595054897295672 0.9646612683253991 4.284467334023077 0.3770868708036629 0.08342098245348556 58.19318391666868 1.0614963702409237 0.045965885676591524 173.77496500283232 34281130.03594147 -7.53505512947884 3.3198060656976778 IDPWSFVSAGPRPSPLPS(ph)PQPAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDPWSFVSAGPRPSPLPSPQPAPR 24 1 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 IDPWSFVSAGPRPS(0.007)PLPS(0.993)PQPAPR;IDPWSFVSAGPRPS(0.007)PLPS(0.993)PQPAPR 117.22 0.00045089 447080000.0 286090.0 271010.0 301180.0 341060.0 235750.0 294380.0 317270.0 289040.0 308940.0 275250.0 True False 284549.7232275873 280030.4040209952 343583.5260965111 384238.16103033005 265771.36510027456 274030.20349598204 301922.4380109017 310609.6325153803 232805.87658390758 257683.30934661918 1.1042613662060243 1.0867230971654285 1.3333557651355077 1.4911255292576104 1.0313875810356652 1.0634379238252256 1.1716802255313123 1.2053929038049103 0.9034573375132805 1.0 17.97523956847298 IDQLEGDHQLIQEALIFDNK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDQLEGDHQLIQEALIFDNK 20 0 P12814-3;P12814;P12814-2;P12814-4;H9KV75;H7C5W8;H0YJ11;H0YJW3 P12814-3 ACTN1 Alpha-actinin-1 0 ; 334.18 6.090699999999997e-80 781380000.0 3508300.0 2744800.0 2540400.0 2162600.0 2184100.0 3212400.0 2858500.0 2952100.0 4120100.0 3341200.0 False True 3489411.7026087753 2836159.0087333606 2898066.2384473607 2436384.938263626 2462232.1888250704 2990334.3491762066 2720223.4344695746 3172400.692460061 3104756.561511484 3127961.755454768 1.1155544649878422 0.9067115362863563 0.9265030921153372 0.7789049639161604 0.7871682524670419 0.9560009306256522 0.8696472806056054 1.0142069949953183 0.992581369032784 1.0 21.576791442726137 1.708802977097286 7.29487649274191 1.0016868250538404 0.8991871392695436 0.19487371223218686 0.08892569497752849 0.2011293428987451 24.956617044060163 0.04540313693645133 0.023706127180586182 51.144975758251874 -1.708802977097286 -0.1024996857842968 IDQLIRPINALDELCR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDQLIRPINALDELCR 16 1 Q8TCU6;Q8TCU6-2 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 0 ; 156.67 1.28e-07 531740000.0 263800.0 328750.0 341540.0 326480.0 312170.0 439280.0 334430.0 417590.0 545450.0 458610.0 False True 262379.7301109356 339692.2450164286 389625.8632811025 367812.33452525176 351922.9991234471 408913.6075538921 318252.34325333533 448752.68627905415 411031.1561555402 429341.11716422474 0.6111218320852654 0.7911943008395698 0.9074972037492254 0.8566902162891658 0.8196815656694607 0.9524212594748548 0.7412575468088758 1.0452124623959658 0.9573533484758673 1.0 18.711764817938537 6.102198871876197 0.3525211870172186 0.9612749017489705 4.672974560104489e-55 0.5558919842069047 0.08321121373771287 13.451124674064204 0.6294966403990646 0.07217943420382845 6.662646453043384 1265315.6274243814 -6.102198871876197 -0.9612749017489705 IDQVNQLLELDHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDQVNQLLELDHQK 14 0 P61201;P61201-2;B4DIH5 P61201 COPS2 COP9 signalosome complex subunit 2 0 147.24 8.0877e-06 371780000.0 303310.0 235760.0 235270.0 265990.0 221020.0 284260.0 342410.0 265650.0 376510.0 325010.0 False True 301677.01266090927 243607.12908007074 268393.97099650104 299664.30672743096 249165.58691182456 264609.7752760644 325846.3201667749 285474.1519433672 283724.1554755203 304267.58354493947 0.9914858794556812 0.8006345146659064 0.8820984735525071 0.9848709587663694 0.8189028354873155 0.8696614085311598 1.0709202616014082 0.9382338684173481 0.9324823636153637 1.0 18.21498111275815 2.277640065526294 24.999769440207956 0.978996972278464 0.8877030862941221 0.315577742100388 0.06752783256600858 191.53003382150146 122524.18767062819 0.02280705944988557 0.01908144463173614 189.513462096595 -2.277640065526294 -0.09129388598434196 IDRDS(ph)YSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDRDSYSPR 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 IDRDS(0.887)YS(0.113)PR;IDRDS(0.966)YS(0.033)PR 123.2 0.0014849 1696480000.0 1275750.0 1526110.0 1228250.0 1435020.0 1416850.0 1452500.0 1548800.0 1360410.0 1799770.0 1656330.0 True False 1268881.503749149 1576905.6487970229 1401176.923859618 1616693.3848640842 1597277.4491721068 1352092.0938172224 1473878.6270094377 1461930.7022220064 1356240.7991824301 1550621.6013445437 0.8183050607891067 1.0169506521963116 0.9036227295199922 1.042609869140382 1.0300884805081445 0.8719677919131421 0.9505082514853641 0.9428030029727217 0.8746433030511338 1.0 20.564415237343535 4.980494521078643 0.0022781159415716217 1.8833711267868287 4.043701386809758e-06 0.016627902596156097 0.0722287239830742 1638132.8395840488 539.5710582009997 219055.32073046762 227073.59289371275 95608.06333338791 -4.980494521078643 -1.8833670830854419 IDRDSYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDRDSYSPR 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 IDRDS(0.05)Y(0.001)S(0.949)PR;IDRDS(0.267)YS(0.733)PR 87.02600000000002 0.0083211 1146460000.0 1035880.0 1288960.0 1093280.0 1226790.0 1269930.0 1277250.0 1231460.0 1114330.0 1408420.0 1237160.0 True False 1030302.9371770887 1331862.2544072263 1247204.3210398883 1382101.4882143887 1431648.0580351728 1188956.7138230938 1171889.5751659612 1197486.963053086 1061333.762861097 1158203.3896140368 0.8895699549976537 1.1499381424285593 1.0768439569629566 1.1933150089251288 1.2360938250338394 1.026552611125845 1.0118167376081375 1.0339176812909694 0.9163621626204868 1.0 20.14345719348189 2.499507657963376 24.276132351647824 1.0009600806947756 1.1160013226408545 0.2751903245794143 0.09094920913823196 721.3360846969409 782226.9900723838 0.029655930981300233 0.027739084060916904 315.8694745551623 -2.499507657963376 0.1150412419460789 IDRGETHLWSPQVSEDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDRGETHLWSPQVSEDGK 18 1 Q53GG5-2;A0A087WYF8;Q53GG5-3;Q53GG5;A0A2R8Y6L7 Q53GG5-2 PDLIM3 PDZ and LIM domain protein 3 0 97.083 0.00088515 203040000.0 125220.0 111780.0 127500.0 114920.0 114550.0 149280.0 129080.0 128510.0 209400.0 145610.0 False True 124545.82943324975 115500.52972756309 145450.89175013316 129468.86021698694 129137.26350895641 138960.6249673217 122835.90726651477 138100.06876055762 157796.17581624375 136317.04513700702 0.9136482477893614 0.8472933785461528 1.0670044351676349 0.9497628127638973 0.9473302724480678 1.0193928780341277 0.9011045327681297 1.013079975594824 1.1575674608971231 1.0 17.056606443015276 7.999999999999998 0.22271274386333648 1.039766550670842 0.22653459253133335 0.25187753234954546 0.0735655161652395 72.91929268249821 0.9393189602429209 0.11101386031409591 21.413681027250682 99999999.9999996 -7.999999999999998 -0.8132319581395087 IDRPEAISEER ddPTM_BT-474_Trastuzumab_2h_R1 2 IDRPEAISEER 11 1 Q9Y6B6;D6RD69;Q9H029;D6R9R5 Q9Y6B6 SAR1B;DKFZp434B2017 GTP-binding protein SAR1b 0 ; 196.7 5.4358e-08 2000800000.0 3265400.0 3309600.0 3004600.0 2911400.0 2934200.0 3479300.0 3403800.0 3200700.0 4121800.0 3418200.0 False True 3247819.4492200487 3419758.03530455 3427621.56354863 3279982.9414874287 3307852.9776340458 3238784.180391224 3239145.190221279 3439552.4868252827 3106037.6192903193 3200047.549531745 1.014928496826647 1.0686585065915521 1.0711158226540058 1.0249794388109579 1.0336886956939362 1.0121050172723676 1.0122178311679322 1.0748441807774338 0.9706223333290214 1.0 21.609661911613056 3.707745196727548 21.21626175484061 1.0244847166584157 1.0532766797372397 0.19483106910525583 0.029070334988849304 180.7990158233971 124478.7956364133 0.007675643195602288 0.011895467679008398 5102.055713651192 -3.707745196727548 0.028791963078824034 IDRTDAISEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 IDRTDAISEEK 11 1 Q9NR31;Q9NR31-2;H0Y5E8 Q9NR31 SAR1A GTP-binding protein SAR1a 0 ;; 170.95 1.3782e-05 1199860000.0 1640000.0 1513330.0 1311050.0 1286160.0 1362150.0 1786940.0 1724360.0 1502920.0 2280770.0 1669430.0 False True 1631170.4222211286 1563700.274222698 1495634.4441491137 1448987.7241270442 1535611.7284044067 1663413.043804299 1640946.1191051106 1615075.5220731248 1718704.7942522161 1562885.54812907 1.0436915384967262 1.0005212960696983 0.9569699111617849 0.9271233750044122 0.9825490614093189 1.0643217257946818 1.0499464411002373 1.0333933434898872 1.0996997165337392 1.0 20.57578070134544 2.748734602958582 22.153275917497115 1.0500270345504645 0.9787322042676353 0.4585862941845955 0.0364653548695537 135.08265332475779 294133.76714848576 0.011512455024915512 0.012050117976622175 560.7052247613486 -2.748734602958582 -0.07129483028282924 IDRVETR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDRVETR 7 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 71.877 0.04845 214200000.0 193040.0 202030.0 187000.0 176850.0 210760.0 177790.0 224010.0 177960.0 275880.0 225560.0 False True 192000.69408876033 208754.44642028617 213327.97456686222 199239.191867161 237599.036727609 165499.795772643 213173.78049869812 191240.27886256954 207893.07060260393 211164.56768836835 0.9092467367542001 0.9885865261655119 1.0102451225704048 0.9435256778551667 1.1251842074104592 0.7837479440058508 1.009514914515843 0.9056456817357607 0.9845073578319615 1.0 17.688008252747256 2.7503238335619677 24.998779075571324 0.9349241183509504 0.9929289912861712 0.11927124061985828 0.07951237860501997 1644.580767499591 3495002.082585902 0.02273919774926652 0.023942992124303362 562.7607938056235 -2.7503238335619677 0.05800487293522083 IDS(ph)LSAQLSQLQK ddPTM_BT-474_Trastuzumab_2h_R1 5 IDSLSAQLSQLQK 13 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 IDS(0.826)LS(0.174)AQLSQLQK;IDS(0.61)LS(0.39)AQLSQLQK;IDS(0.996)LS(0.004)AQLSQLQK;IDS(0.5)LS(0.5)AQLSQLQK;IDS(0.999)LS(0.001)AQLSQLQK 371.23 2.9379e-91 1370945000.0 1947046.0 1408225.0 1260199.0 1189245.0 1156003.0 1584935.0 1562038.0 1537747.0 2033880.0 1540226.0 True False 1936563.3206731477 1455096.9178350125 1437624.06535393 1339803.2950639627 1303213.1298834046 1475372.1739856768 1486476.2543753658 1652501.489661048 1532657.5265957084 1441927.4580261775 1.3430379662261693 1.0091332332535385 0.9970155276201355 0.9291752422122467 0.9037993712023101 1.0231944511309057 1.0308953103716951 1.1460364947367883 1.0629227691479912 1.0 20.459567155138405 4.73939594059681 24.425375082007818 1.0167981111052016 1.3430381027010239 0.7104329836141257 0.06344166604869755 33.18333210142289 970070.09691894 0.018170969253561806 0.1095256855346073 54877.704978185015 -4.73939594059681 0.3262399915958223 IDS(ph)PGFKPASQQK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDSPGFKPASQQK 13 1 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 IDS(1)PGFKPASQQK;IDS(1)PGFKPASQQK;IDS(1)PGFKPASQQK;IDS(1)PGFKPASQQK 205.78 4.0667e-08 6046110000.0 6841170.0 4733280.0 4376300.0 3985230.0 4131900.0 5987890.0 5715010.0 5744290.0 9452190.0 5372120.0 True False 6804337.900845444 4890824.363471817 4992445.0005184915 4489759.709385158 4658072.973309965 5573961.258276905 5438553.132841684 6172958.088713589 7122824.427356916 5029266.702296678 1.3529483130688131 0.9724726591330622 0.992678514789965 0.8927265096788071 0.9261932701208304 1.1083049653603547 1.0813809357849524 1.2274071856031477 1.4162749460282527 1.0 22.261916630968837 1.919974402916446 2.1766259029816317 1.2404915864279729 1.0225555350268896 0.19510991667182598 0.15318156935449784 0.41894055089305865 3.6498124354072363 0.08862388813761062 0.04402484761121861 83.17147488373337 -1.919974402916446 -0.2179360514010833 IDS(ph)PGFKPASQQVYR ddPTM_BT-474_Trastuzumab_2h_R1 5 IDSPGFKPASQQVYR 15 1 A0A087X0K9;G5E9E7;Q07157-2 A0A087X0K9 TJP1 Tight junction protein ZO-1 1 IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR 235.7 6.629299999999998e-18 6010310000.0 7840020.0 5869050.0 5459170.0 4893710.0 4885530.0 8000690.0 7586380.0 6671880.0 11535280.0 7587020.0 True False 7797810.203428114 6064397.781334357 6227773.68404373 5513253.184236614 5507673.286694997 7447621.131898446 7219397.816614054 7169769.564720176 8692564.808832841 7102809.888025381 1.0978486438971755 0.8538026326114005 0.8768042200514372 0.7762073420452097 0.7754217518872886 1.0485457515136907 1.0164143388921656 1.0094272094777144 1.2238205648003653 1.0 22.759958440359142 2.7161133129133197 23.02646026547891 1.0523785749794161 0.8692815700899544 0.44316396799332125 0.10261597613212085 282.69427986152624 289986.95440405357 0.03352644614087303 0.03164118348298611 520.1316877549956 -2.7161133129133197 -0.18309700488946168 IDS(ph)RPPSPEPPKQEYWGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDSRPPSPEPPKQEYWGSK 19 2 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 IDS(0.537)RPPS(0.462)PEPPKQEYWGSK 57.278 0.046032 247470000.0 167220.0 170650.0 189050.0 157610.0 168060.0 233610.0 232500.0 225590.0 311640.0 249650.0 True False 166319.7060998885 176329.98208989677 215666.5967479426 177563.40983988263 189461.44483033795 217461.09055878897 221253.08676374887 242424.67132280872 234840.49776205453 233717.12326388195 0.7116282443375048 0.7544589785610559 0.9227676335226874 0.7597364170848616 0.8106442616804912 0.9304456923049714 0.9466704179562386 1.037256782632462 1.0048065562440807 1.0 17.83440391135134 2.4955878808636465 1.3412082968196435 1.0166994313451736 0.7882579188777304 0.7692053921926045 0.053988737275364164 0.20606944546863673 0.7504736551776608 0.028427459466007495 0.0213301832438132 313.0313836397039 -2.4955878808636465 -0.22844151246744315 IDS(ph)TEVIYQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 IDSTEVIYQPR 11 0 K7EMR0;K7EQN8;K7EP59;Q15831-2;Q15831 K7EMR0 STK11 Serine/threonine-protein kinase STK11 1 IDS(0.862)T(0.138)EVIYQPR;IDS(0.851)T(0.149)EVIYQPR;IDS(0.981)T(0.019)EVIYQPR 224.49 6.4731e-12 876200000.0 503515.0 448679.0 393887.0 411028.0 387166.0 492487.0 464209.0 447395.0 604202.0 462219.0 True False 500804.1311857755 463613.00928281667 449342.8658728211 463064.10265634966 436469.2951873291 458442.53287969844 441753.4372194109 480781.8867257774 455304.51299200574 432719.78769440454 1.157340490145215 1.0713931335403353 1.0384153409461276 1.0701246298987714 1.0086649781210666 1.0594443469348802 1.0208764419421146 1.1110697971254213 1.0521924948658714 1.0 18.723073569210612 4.722349305435704 3.0377479060519232 1.0510094703872654 1.1723425655186415 0.5373418388912743 0.030870223295400873 0.28060079916690506 3.9493102756223357 0.007523039779335975 0.08057997611866788 52765.40858745687 -4.722349305435704 0.12133309513137602 IDSDDALNHDFFWSDPMPSDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDSDDALNHDFFWSDPMPSDLK 22 0 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 0 ;;; 227.38 4.4953e-26 620559000.0 581066.0 513433.0 481996.0 440873.0 417408.0 601311.0 572322.0 548721.0 787127.0 597408.0 False True 577937.6052185011 530522.3070281971 549856.8472156652 496687.4765962729 470562.4346289518 559743.785903839 544636.5983776444 589669.3473687803 593150.0978114252 559280.9099732785 1.0333583623408744 0.9485793231411108 0.983149679187041 0.8880822995013432 0.8413704566662833 1.0008276269086005 0.9738158207539503 1.0543348375630301 1.0605584550342777 1.0 19.093213561855052 2.067206430856244 2.0075566315071383 1.0419437473765616 0.9409567610394401 0.35377784879893015 0.053549063995242556 0.3547803654752092 2.7261795433832843 0.0307356044210134 0.017003192834667474 116.73643622214148 -2.067206430856244 -0.10098698633712144 IDSDLGDAWAFFYK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDSDLGDAWAFFYK 14 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 97.813 0.0065735 264720000.0 152950.0 169790.0 178380.0 166780.0 143820.0 178050.0 188010.0 183990.0 222700.0 193510.0 False True 152126.53419434244 175441.35750977756 203494.3534932451 187894.33089966135 162134.62451207434 165741.82258461698 178915.2380320532 197720.26808228897 167818.56902711277 181160.02612775407 0.8397356604876111 0.9684330547957434 1.1232850747644563 1.0371732380252487 0.8949801342915296 0.914891801062867 0.9876088111506572 1.0914122298859497 0.926355403088577 1.0 17.466905127009777 4.697822313155063 4.2281920754566675 1.001674695803655 0.8324863258594547 0.305326901349515 0.07012902708437002 0.24055437297676993 8.87576153666484 0.018095129013399217 0.11036345623065495 49868.04160692379 -4.697822313155063 -0.1691883699442004 IDSIEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDSIEDR 7 0 Q13158 Q13158 FADD FAS-associated death domain protein 0 96.51 0.029496 204170000.0 396670.0 388540.0 329700.0 317230.0 323270.0 387870.0 379440.0 339020.0 459730.0 398480.0 False True 394534.37279418035 401472.3190226103 376118.8941962268 357391.2854736752 364436.5183285933 361057.4598477697 361085.03759843804 364319.3939086779 346435.70156638796 373048.6652441081 1.0575949187112432 1.0761928842712865 1.0082301030352423 0.9580285865379323 0.9769141462820156 0.9678561900536707 0.9679301153970312 0.9766001807573333 0.9286608795120451 1.0 18.509004320806472 4.051122447645201 3.213288663179029 0.968189685063428 1.067051782347635 0.8316577737200601 0.017652749534223723 0.08149693577385242 1.7150253774806554 0.0042738616554714 0.010248856939192655 11249.220966823541 -4.051122447645201 0.09886209728420714 IDSLLENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDSLLENDR 9 0 E7ERK6;H0YC35;H0YLK8;P10909-4;P10909-6;P10909;P10909-5;P10909-2;E7ETB4 E7ERK6 CLU Clusterin;Clusterin;Clusterin beta chain;Clusterin alpha chain 0 99.855 0.011759 50210000.0 66595.0 77966.0 56342.0 67401.0 74575.0 72514.0 75366.0 70400.0 88469.0 70465.0 False True 66236.45991940012 80561.0511785578 64274.46386655696 75933.95968921986 84071.68420934454 67501.2778595951 71720.25865392118 75653.60548395659 66667.00037386469 65967.86337187838 1.0040716272104735 1.2212166206507817 0.9743299325040242 1.1510750205923745 1.2744339427125313 1.0232448712045203 1.0871999635582408 1.146825160267464 1.0105981453127424 1.0 16.009475757879976 1.2247635476381569 23.211858979579734 1.0052986908820933 1.1138290394242507 0.17931436499549513 0.08959882117101789 179.50785877314345 301977.601909829 0.07898128541943386 0.020260689580699178 16.778902392252892 -1.2247635476381569 0.10853034854215737 IDSRPPS(ph)PEPPKQEYWGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDSRPPSPEPPKQEYWGSK 19 2 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 IDS(0.037)RPPS(0.963)PEPPKQEYWGSK;IDSRPPS(1)PEPPKQEYWGSK 170.53 6.2757e-12 5134000000.0 3782310.0 3559180.0 3364380.0 3003700.0 3163710.0 4805070.0 4444120.0 4316380.0 5996920.0 4315470.0 True False 3761946.463214148 3677645.154730259 3838055.4602848142 3383968.1120237 3566589.715721697 4472906.820818121 4229140.937412951 4638490.193733525 4519059.420611019 4040053.0099402484 0.9311626490935044 0.9102962623712333 0.9500012625679826 0.8376048788710692 0.8828076530051387 1.107140626574173 1.046803328324521 1.1481260721878814 1.118564387519721 1.0 21.945942792171586 2.737389405675825 24.995718037781984 1.0945790846135282 0.9018622467425605 0.7842615589259728 0.047504941354642116 44.89310308419099 958089.4649127276 0.014935897750951645 0.014828204600155086 546.2474287085313 -2.737389405675825 -0.1927168378709676 IDTGWLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 IDTGWLDR 8 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;; 164.77 0.00076339 1858300000.0 1525570.0 1727540.0 1567080.0 1663090.0 1641990.0 1793280.0 1821160.0 1508730.0 1996600.0 1824310.0 False True 1517356.5006267603 1785040.1245800168 1787711.2426964624 1873637.023479539 1851087.6936627806 1669314.7745270547 1733063.5332931995 1621319.0937757047 1504564.6830693036 1707880.9739296315 0.8884439394716734 1.0451782951085 1.0467422905843087 1.0970536308326702 1.0838505270092957 0.9774186843279596 1.0147449147498997 0.9493162102773719 0.8809540629798567 1.0 20.703776003120378 1.8684186992862892 1.8354299533595129 0.9343062363021692 1.0323801251332374 0.24688273712120434 0.061708608267477115 0.43502794286009056 2.7566202859399573 0.04105156113698747 0.018585435027154058 73.86159798012308 -1.8684186992862892 0.09807388883106816 IDTHNIIVNQLVFPDPEKPCK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDTHNIIVNQLVFPDPEKPCK 21 1 O43681 O43681 ASNA1 ATPase ASNA1 0 ; 167.45 7.2659e-12 565350000.0 1690650.0 1386290.0 1221450.0 1187980.0 1269710.0 1781650.0 1580360.0 1573720.0 2363220.0 1786670.0 False True 1681547.7282488735 1432431.824619997 1393419.5429662764 1338378.146193665 1431400.0423392155 1658488.7290529774 1503911.9492385297 1691158.9775882382 1780836.0965256114 1672643.1909548535 1.0053236322858174 0.8563881599890242 0.8330644279075574 0.8001575909501845 0.8557713026183901 0.9915376680583049 0.8991229913057541 1.0110697767064203 1.0646837927872677 1.0 20.6736982911253 2.0549556564505433 1.122081662181221 1.0328224959332475 0.8682893150768016 0.4948468175988393 0.062440476326684806 0.4118954616680368 0.9622917586640539 0.047807566018484925 0.023176707734410756 113.4894931540844 -2.0549556564505433 -0.16453318085644586 IDTHPS(ph)PSHSSTVK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDTHPSPSHSSTVK 14 0 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H7C477;H0Y594;B7ZBA0 Q8NI27 THOC2 THO complex subunit 2 1 IDTHPS(0.997)PS(0.003)HSSTVK;IDTHPS(0.825)PS(0.174)HSSTVK;IDTHPS(0.99)PS(0.009)HSSTVK;IDT(0.001)HPS(0.651)PS(0.348)HSSTVK 163.91 2.7093e-06 1980220000.0 1128760.0 1652030.0 1842780.0 1878140.0 1838680.0 2224500.0 2116800.0 1003780.0 2162790.0 1830280.0 True False 1122682.8815770263 1707016.8198767763 2102227.4062691038 2115912.331429967 2072824.9992898118 2070725.55090975 2014402.2970387235 1078687.1606915619 1629799.3844012127 1713469.9634184549 0.6552101323896102 0.9962338741387656 1.2268831383977452 1.2348698119041552 1.2097235688651504 1.208498307597148 1.175627434413787 0.6295337436435298 0.9511689257450914 1.0 20.70848947141934 1.7566514273432683 24.99999999998934 0.8274225604696659 1.115282923473295 0.2463954867241539 0.18923557915288824 8.826390038102586 12209.863184948363 0.09008094506068479 0.049955032676958756 57.10201415382088 -1.7566514273432683 0.28786036300362916 IDTIEIITDR ddPTM_BT-474_Trastuzumab_2h_R1 9 IDTIEIITDR 10 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;; 251.75 1.1271e-16 18092200000.0 8212012.0 8941517.0 8076397.0 7584126.0 8004884.0 8800502.0 8867615.0 7583677.0 9468053.0 8157972.0 False True 8167799.439832302 9239129.98808384 9213483.496298842 8544275.573982045 9024258.528735308 8192144.0108933775 8438654.584871056 8149609.48687151 7134778.203560229 7637323.24256879 1.069458392739848 1.2097340513999624 1.206376004218975 1.1187526444288882 1.1815996576439296 1.0726459717237233 1.10492306228913 1.067076674383421 0.9341987993636981 1.0 22.86463565505484 1.758118096984225 0.9532495043446558 0.9708755439007589 1.1588581842036987 0.6480006554861617 0.049823628141652955 0.31887707075935745 0.5415919833450172 0.042234328455025685 0.017637744183622222 57.29518116481468 -1.758118096984225 0.18798264030293976 IDVAFVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IDVAFVDR 8 0 Q15645 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog 0 81.548 0.052522000000000006 60780000.0 75715.0 90670.0 85183.0 91539.0 86696.0 91920.0 92936.0 82962.0 104240.0 97675.0 False True 75307.35885272738 93687.89613882765 97176.02597609108 103127.82801429498 97736.22171254885 85565.78675640555 88440.33063000327 89153.04571250007 78551.44874443757 91441.29787622525 0.8235596016437045 1.0245687486374417 1.0627148589648012 1.127803633691733 1.0688411470804406 0.9357455410598745 0.9671814889342004 0.974975725226226 0.8590368965537284 1.0 16.48055826020492 2.7270350223825135 24.155753510817554 0.9499461345871135 1.0298639565582004 0.166800629929577 0.08165487553701144 849.429431190998 1780262.0424055015 0.027136183385601923 0.025805901792532834 533.377906422962 -2.7270350223825135 0.07991782197108688 IDVDAPDIDIHGPDAK ddPTM_BT-474_Trastuzumab_2h_R1 4 IDVDAPDIDIHGPDAK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;; 204.43 2.5231e-11 5385350000.0 5134140.0 4871950.0 4261290.0 3841230.0 3744870.0 6074040.0 5519500.0 5008090.0 7642730.0 5981940.0 False True 5106498.360696582 5034109.910594027 4861242.592203338 4327529.324149817 4221756.996916504 5654155.911552184 5252500.69846242 5381819.106365729 5759281.59883514 5600167.467803511 0.9118474385015928 0.8989213161099444 0.8680530752252676 0.7727499845370078 0.7538626337851919 1.0096405052275783 0.9379185048768814 0.9610103871548288 1.0284123880127527 1.0 22.4170385395939 2.723004934834162 24.951270139634175 0.978908287785549 0.8420015373851311 0.6614740379874984 0.05215527716670201 567.2233410352102 909823.3652063343 0.0185240028287415 0.017521433894965906 528.4512564669413 -2.723004934834162 -0.1369067504004179 IDVLDPEELKSESAK ddPTM_BT-474_Trastuzumab_2h_R1 1 IDVLDPEELKSESAK 15 1 Q9BVG4;A6NDF3 Q9BVG4;A6NDF3 PBDC1 Protein PBDC1 0 60.55 0.088085 94706000.0 29176.0 30673.0 27848.0 28337.0 28285.0 30424.0 33917.0 33240.0 46263.0 39405.0 False True 29018.91965775835 31693.932262779937 31768.756340844808 31924.46129454192 31886.92709167028 28320.860490392533 32276.305134477705 35720.53758929992 34862.103542439705 36890.13916368219 0.7866307993309782 0.8591437435937394 0.8611720384107601 0.865392812775591 0.8643753538089793 0.7677081499945657 0.8749304249373301 0.9682950078016044 0.9450249940168548 1.0 15.170947610988673 1.8208746418935093 3.604047513851537 0.9683837107488825 0.8381942488961913 0.7583071238376031 0.03442020145216 0.11520371924193883 2.604053996142179 0.017812868688296096 0.009376569917767807 66.20253840106952 -1.8208746418935093 -0.1301894618526912 IDWPVGSPATIHYPALDGHLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDWPVGSPATIHYPALDGHLSR 22 0 O15498;O15498-2 O15498 YKT6 Synaptobrevin homolog YKT6 0 ; 219.22 6.453899999999998e-26 1363140000.0 131850.0 191628.0 189476.0 242294.0 205209.0 195758.0 201365.0 136755.0 204763.0 178908.0 False True 131140.13424991205 198006.22213842793 216152.57384508432 272968.39555703633 231341.14978096387 182225.7102247653 191624.20566099905 146960.35252781922 154301.90233362702 167489.93826915513 0.7829732078542581 1.18219771399183 1.2905406502552332 1.629759962764916 1.3812241629058355 1.0879800429081887 1.144093834180417 0.8774279460993949 0.9212607272304618 1.0 17.353714904662752 2.1015541028900095 1.8446157953738862 0.9256754370126209 1.2628832357911217 0.2849147411802657 0.20505847697549606 0.4446037315847028 2.9057259707996033 0.12319621390597572 0.0685244407236787 126.34384887589515 -2.1015541028900095 0.3372077987785008 IDYANLTGISVSSLSDSLFVLHVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDYANLTGISVSSLSDSLFVLHVQR 25 0 O00159-3;F5H6E2;O00159-2;O00159 O00159-3 MYO1C Unconventional myosin-Ic 0 ; 223.85 8.9484e-34 69323000.0 42803.9 60611.0 49714.0 48412.9 52621.0 57946.0 57689.0 50821.3 57367.5 60242.0 False True 42573.448558360345 62628.40049487678 56713.29907816571 54541.96817611351 59321.97244089737 53940.32941021184 54898.36267661894 54613.84347133236 43230.04831011632 56397.30398422898 0.7548844634535304 1.1104857159907906 1.005603017726257 0.9671024024723894 1.0518583026147181 0.9564345385250292 0.9734217559756189 0.9683768480600535 0.7665268595499748 1.0 15.783338577252437 1.4294850203061398 17.802082072280193 0.8779826956477678 0.9810756692471135 0.11088978507876379 0.10084287417166479 8.49756821226078 3175.358412586817 0.05531720274575737 0.022744768893740712 26.883451150125122 -1.4294850203061398 0.10309297359934577 IDYGTGHEAAFAAFLCCLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 IDYGTGHEAAFAAFLCCLCK 20 0 Q15257;Q15257-2;A6PVN5;F6WIT2;Q15257-3;Q15257-4;A6PVN9;Q5T948;Q5T949;C9IZ76 Q15257 PPP2R4 Serine/threonine-protein phosphatase 2A activator 0 ; 219.97 8.844700000000002e-25 564160000.0 1082360.0 1093920.0 963860.0 949940.0 795120.0 1001740.0 1114300.0 979780.0 1514860.0 1154340.0 False True 1076532.6940215 1130330.4659113963 1099563.1099786945 1070202.3066004564 896373.8189545304 932492.0716423161 1060397.0519606252 1052896.158822031 1141543.0510840241 1080669.032919804 0.996172427660735 1.0459543407637162 1.0174836850907456 0.9903145866120839 0.8294619274253321 0.8628840498213072 0.9812412678242411 0.9743002961575248 1.0563299366502135 1.0 20.04349331841399 3.4697769329155843 24.994871737366456 0.9459552387606414 1.0193820177215747 0.19935710026091868 0.06234729134835566 282.04534365563666 959879.0128854964 0.01870827037764332 0.02538529909251757 2949.693783509944 -3.4697769329155843 0.0734267789609333 IDYIAGLDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IDYIAGLDSR 10 0 H3BQB1;P07741-2;P07741;H3BQF1 H3BQB1 APRT Adenine phosphoribosyltransferase 0 ; 128.86 0.00074093 1084090000.0 609400.0 755020.0 703380.0 663730.0 521450.0 666340.0 685310.0 641390.0 922550.0 700730.0 False True 606119.0581107044 780150.3842807724 802409.7901114404 747758.1499462298 587853.5666237046 620277.48419564 652158.9371615679 689253.7787124271 695199.9140366549 656008.8114748645 0.9239495682199816 1.1892376605838693 1.2231692258941331 1.1398599178341688 0.8961062051926855 0.9455322449116317 0.9941313679847665 1.050677623007563 1.0597417319344833 1.0 19.323355667612052 3.266738656321503 24.987105242357885 0.99554502955108 1.131504093852902 0.34138292186265884 0.08628812407606926 240.92836370883947 213643.53608617935 0.024664053887772805 0.033388853186934415 1848.1561266542124 -3.266738656321503 0.13595906430182192 IEAELQDICNDVLELLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEAELQDICNDVLELLDK 18 0 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ; 216.68 2.7995e-18 190020000.0 154550.0 136644.0 100817.0 122361.0 144067.0 152643.0 148868.0 140154.0 202805.0 137488.0 False True 153717.91997211924 141192.11293695756 115011.15728292696 137851.89005404394 162413.07849799038 142091.148692972 141666.68610901388 150613.00316759158 152826.4251977712 128713.39813060111 1.1942651053012125 1.0969496182028753 0.8935445645388761 1.0709987620260815 1.2618195219521386 1.1039344058712282 1.1006366716017357 1.1701423888659181 1.1873389050198442 1.0 16.973802709895306 3.4540624901024324 24.990135043810003 1.1451949886012025 1.051314182676236 0.12239281918310885 0.09390316284818997 389.2989456369235 421904.60481563874 0.02581590484118379 0.03495683070672142 2844.8704229288924 -3.4540624901024324 -0.0938808059249665 IEASKNELHNLLDKPQLQGIPVLVLGNKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEASKNELHNLLDKPQLQGIPVLVLGNKR 29 3 Q96BM9 Q96BM9 ARL8A ADP-ribosylation factor-like protein 8A 0 88.001 0.0010807 73219000.0 70206.0 65691.0 76003.0 59254.0 59850.0 81262.0 83153.0 76579.0 119040.0 79642.0 False True 69828.01869661995 67877.48522395192 86703.56177008148 66755.55032455042 67471.54274125742 75644.5492101722 79130.5717146924 82293.71384028284 89704.18705427712 74559.17937505337 0.9365448933573375 0.910384017003585 1.1628824578921193 0.895336441254959 0.9049394495325228 1.014557159081099 1.0613122673553534 1.1037368507816137 1.2031273386612822 1.0 16.18609836081235 2.189415964468104 2.2135907532322734 1.1101887720996273 0.9667782486298302 0.3400320860551487 0.0855338238636355 0.3477403658505304 3.42390504585213 0.04070449230291613 0.0262659167780163 154.67351833356892 -2.189415964468104 -0.1434105234697971 IEDFGVHCK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEDFGVHCK 9 0 Q92905;E5RHH5 Q92905 COPS5 COP9 signalosome complex subunit 5 0 ; 110.14 0.002336 901720000.0 2160400.0 2227900.0 2072100.0 2010170.0 1846780.0 2521100.0 2551700.0 2217200.0 2998100.0 2319900.0 False True 2148768.6464430033 2302054.3047060096 2363833.6689839293 2264657.315892626 2081956.4862773526 2346822.2910310477 2428264.5225593867 2382658.7227134705 2259258.4274817547 2171841.995833683 0.9893761381191901 1.0599547799159044 1.088400387099315 1.0427357608136292 0.9586132371835702 1.0805676911732232 1.1180668424395548 1.0970681694544098 1.0402499039137127 1.0 21.050487718452235 IEDFLER ddPTM_BT-474_Trastuzumab_2h_R1 8 IEDFLER 7 0 P46781;B5MCT8;C9JM19 P46781 RPS9 40S ribosomal protein S9 0 ;;;;;;; 187.63 0.0013526 11211460000.0 5365660.0 5998420.0 5507080.0 5581530.0 4957190.0 5702540.0 5929200.0 5312750.0 6662480.0 5834860.0 False True 5336771.882740863 6198073.783578544 6282428.995602539 6288151.125712838 5588458.7629328985 5308336.832135254 5642381.944256421 5709214.382597863 5020601.076658104 5462474.239325028 0.9769880184186099 1.134664167193292 1.1501068417631255 1.1511543762428498 1.0230636371153738 0.9717824926147716 1.0329352042772515 1.0451700332967289 0.9191075063593298 1.0 22.381123140297014 3.1180940632524186 6.0701414526907085 1.0033477010991 1.1083617324452344 0.4488161736352134 0.05685205527919681 0.2014055231202023 9.939816193776553 0.016708209522105034 0.02008936822909976 1312.484137394728 -3.1180940632524186 0.1050140313461343 IEDHLDEAIHVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEDHLDEAIHVLR 13 0 K7ENH8;A0A0A0MRB7;P15923-2;X6REB3;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 0 ; 172.76 1.321e-05 89959000.0 97712.0 111067.0 95071.0 104325.0 96100.0 112521.0 108966.0 63131.0 133177.0 110330.0 False True 97185.9294488237 114763.79795358056 108456.17042805435 117532.53430331666 108337.76537067413 104742.68811594317 103694.89828945661 67842.15579272245 100357.31283037199 103288.6449417347 0.9409159109759495 1.1110979141832968 1.050029947524577 1.137903729588252 1.0488835963700331 1.0140774736180216 1.0039331849880602 0.6568210458273736 0.9716199964379794 1.0 16.656322134383363 1.9637977748698696 14.712540743514166 0.8360899900194426 1.0531148394911112 0.35450223104846423 0.10102641402022249 3.73352379648415 1516.2641084707727 0.03975726558600787 0.025676698840481318 92.00210728608388 -1.9637977748698696 0.21702484947166856 IEDRLPELEQLER ddPTM_BT-474_Trastuzumab_2h_R1 1 IEDRLPELEQLER 13 1 Q9NYH9 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog 0 154.69 4.2247e-05 52958000.0 54657.0 69383.0 60421.0 67623.0 60057.0 66999.0 72824.0 59846.0 77650.0 64752.0 False True 54362.73278496359 71692.37121209079 68927.75161125326 76184.06486645763 67704.9029642722 62367.51682868152 69301.22490530417 64312.012411830416 58514.19795669203 60619.47192302375 0.8967866439680449 1.1826624175005631 1.1370562861184206 1.2567589662146548 1.116883747358369 1.0288363598395822 1.1432172321346636 1.060913438729647 0.9652706646965671 1.0 15.887493663915947 1.4423540695644828 3.4462752527423306 0.9839839247738926 1.1154730305862806 0.23099242096949646 0.09049570079210618 0.32006372935694416 6.965652236660525 0.06641899560135596 0.023235253317672493 27.691983844012725 -1.4423540695644828 0.13148910581238793 IEDTVFHVFDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEDTVFHVFDK 11 0 Q9Y2L1;G3V1J5;Q9Y2L1-2 Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 0 ; 153.34 3.252e-05 373942000.0 990130.0 1032130.0 956060.0 897760.0 810040.0 1073520.0 1134530.0 1047710.0 1522360.0 1130330.0 False True 984799.2500937841 1066483.8231142382 1090664.9377775087 1011416.323950593 913193.7925167612 999310.0891942615 1079648.449574521 1125895.4403635818 1147194.7765788753 1058191.3716758 0.9306438102346375 1.0078364383422498 1.0306878008750744 0.955797175277349 0.8629760334093312 0.944356678708983 1.020277124226349 1.0639809305764443 1.0841089875474277 1.0 20.013169128724037 2.0753973618350536 3.9344912714251543 1.0539603995997744 0.9572721060515171 0.4600648257421738 0.04660722039876538 0.21294129285459756 6.4694327978100254 0.0209726798501338 0.014453232564297428 118.9590156396538 -2.0753973618350536 -0.09668829354825725 IEDVGS(ph)DEEDDS(ph)GKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 2 IEDVGS(1)DEEDDS(1)GKDK 54.875 0.040192 0.0 273530.0 179360.0 146960.0 125020.0 123890.0 194520.0 184190.0 200400.0 348330.0 188410.0 True False 272057.34487204003 185329.88917459044 167650.69060078106 140847.51918141052 139666.65714643925 181073.29025082677 175280.02602587058 215354.8656105805 262488.73888286605 176385.5124940837 1.5424018731763207 1.0507092479083664 0.950478801973061 0.7985209056562104 0.7918261265993937 1.026576886562043 0.9937325551708778 1.22093284513831 1.4881536197122223 1.0 17.428372543771726 -0.8605594813068407 8.231823752503493 1.0000050598279224 1.0764178194440917 0.008142095979573272 0.24323111742777934 0.0 0.0 0.24276852383062522 0.05722108981976103 0.13786071249441662 0.8605594813068407 0.07641275961616922 IEDVGS(ph)DEEDDS(ph)GKDKK ddPTM_BT-474_Trastuzumab_2h_R1 6 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 2 IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK 189.64 1.8414e-10 4140530000.0 5577870.0 2515940.0 2196760.0 1772490.0 1892060.0 3548410.0 3533420.0 3620580.0 7848250.0 3109650.0 True False 5547839.36767961 2599681.5419821506 2506044.713419787 1996887.0522625062 2133002.6258817613 3303116.76875867 3362494.9756247923 3890766.06453272 5914153.948662056 2911189.474694693 1.9056950486747113 0.8929963386374186 0.8608318816770266 0.685935103029296 0.7326911025279305 1.1346278892084412 1.1550244341198126 1.3364867173205066 2.0315249144964342 1.0 21.473177309611575 1.7288261633254658 2.3704662237587817 1.5424803469211283 1.0009299950913668 0.17887712732015815 0.3990504764604126 0.3876303540372308 4.561435393130475 0.25491262814030663 0.11019884902790238 53.55822351005179 -1.7288261633254658 -0.5415503518297615 IEDVGS(ph)DEEDDSGK ddPTM_BT-474_Trastuzumab_2h_R1 16 IEDVGSDEEDDSGK 14 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK 358.81 2.6668999999999994e-82 233820680000.0 37577970.0 24813781.0 21281696.0 18802658.0 19887874.0 29616869.0 28386529.0 28181123.0 39959106.0 27599936.0 True False 37375654.38482498 25639692.70033765 24277973.812982284 21183072.574920062 22420476.869235482 27569524.55664053 27013364.145198587 30284141.499103054 30111719.750887875 25838484.454985965 1.446511092782484 0.9923063694004717 0.9396051790606258 0.8198264341634959 0.8677164060568219 1.0669946453194754 1.045470147146572 1.1720556424995439 1.165382582842521 1.0 24.62301811607782 -0.1898259240606938 8.478766329956754 1.000000001747316 1.0481221904759865 0.007573003394526268 0.1696298816738986 0.0 0.0 0.16877601745940704 0.0397808888157353 0.6459130750458224 0.1898259240606938 0.04812218872867047 IEDVGS(ph)DEEDDSGKDK ddPTM_BT-474_Trastuzumab_2h_R1 24 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.994)DEEDDS(0.006)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.999)DEEDDS(0.001)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK 331.64 3.7848999999999995e-71 326658932000.0 30878011.0 19984125.0 14469517.0 15800120.0 13866868.0 24332267.0 23928461.0 22965020.0 42914294.0 23109732.0 True False 30711767.219645526 20649284.519966338 16506699.22230365 17800413.57197718 15632731.44443399 22650234.654285513 22770949.925832145 24678786.406408656 32338641.265778303 21634849.118523005 1.419550792861836 0.9544455062682706 0.7629680767300192 0.8227657828561922 0.7225717803157587 1.0469328688265809 1.0525125366525643 1.1406960257134189 1.494747714144726 1.0 24.366853723648592 1.8818236230805587 1.7875409508074946 1.245933556962355 0.92855594509728 0.22251692702935455 0.21504338713669813 0.48144916874767046 2.884415879584857 0.1441729992327776 0.06550812965306729 76.17695751527 -1.8818236230805587 -0.31737761186507507 IEDVGS(ph)DEEDDSGKDKK ddPTM_BT-474_Trastuzumab_2h_R1 38 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.997)DEEDDS(0.003)GKDKK;IEDVGS(0.998)DEEDDS(0.002)GKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.95)DEEDDS(0.05)GKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.998)DEEDDS(0.002)GKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.877)DEEDDS(0.123)GKDKK 278.79 6.0057e-36 469894849600.0 35332484.0 18216761.0 13722848.4 14401390.100000001 13292787.1 25660073.0 25516271.0 23907576.0 52058814.0 22313261.0 True False 35142257.83195204 18823094.87762041 15654906.17358344 16224604.6100522 14985544.74466307 23886252.55082463 24281951.490108944 25691680.721331075 39229616.842068404 20889209.579636175 1.6823163029687076 0.9010917720874458 0.7494254923290449 0.7766978711281034 0.7173820860733627 1.143473258754133 1.1624160022684717 1.229902003873645 1.8779847409981159 1.0 24.31625456795628 1.9225396362021525 1.651155971826053 1.4211033239664541 0.9522037050107993 0.2059182554999731 0.3315857933603181 0.5285517556022714 2.686629397624448 0.2208653736685191 0.1015849564349948 83.66419490082745 -1.9225396362021525 -0.4688996189556548 IEDVGS(ph)DEEDDSGKDKKK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEDVGSDEEDDSGKDKKK 18 3 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 IEDVGS(1)DEEDDSGKDKKK 168.64 1.1173e-10 187410000.0 320950.0 242530.0 160300.0 234130.0 178820.0 343920.0 364210.0 304130.0 1038400.0 351500.0 True False 319222.04086089757 250602.46443751897 182868.84664742267 263770.83399411006 201591.6670508211 320145.6199005981 346591.7708826881 326825.72494084813 782500.2338471217 329066.96906570997 0.970082295914524 0.761554601329425 0.555719242094172 0.8015718950553156 0.6126159292838842 0.9728889557331096 1.0532560343772417 0.9931890942101385 2.3779361267063774 1.0 18.328021693981146 1.4081998664027349 6.9198317322981415 1.7034429866113585 0.8261830499221678 0.5005844027577229 0.3422852623417448 0.15691183686256913 11.78807365721291 0.2115217385976815 0.0789416012077615 25.597636431667627 -1.4081998664027349 -0.8772599366891907 IEDVGSDEEDDSGKDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 ; 186.85 1.3079000000000002e-09 945890000.0 980390.0 568360.0 465200.0 461040.0 470970.0 790410.0 757540.0 713960.0 1353690.0 757030.0 False True 975111.689171568 587277.5190191242 530696.1164091137 519407.61672850413 530945.2378421054 735770.8171250051 720894.8961161736 767239.3206154209 1020091.23801667 708715.6972740102 1.375885553152298 0.8286503618842036 0.7488138310614152 0.7328857237483848 0.7491653421595184 1.0381748562294573 1.017184886533499 1.0825770101699663 1.4393518330979946 1.0 19.434847477937456 1.964068465954541 1.4871126236070413 1.2012514633466402 0.8778787083499049 0.2487987079475491 0.20685340354813278 0.5296109249847273 2.1796355893710757 0.143018893257996 0.06640930108797377 92.05946908575848 -1.964068465954541 -0.32337275499673535 IEDVGSDEEDDSGKDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 ;; 209.25 2.4981e-12 2457450000.0 2726940.0 1495270.0 1150510.0 1158100.0 1200930.0 2000590.0 2098010.0 1917550.0 4240230.0 1849050.0 False True 2712258.4580315156 1545039.1580401957 1312491.8075878096 1304715.3412573333 1353861.3170302121 1862293.9221823004 1996521.2411234952 2060647.318121601 3195282.1326710153 1731042.0459486526 1.5668356897392015 0.8925486019569658 0.758209086058642 0.7537167247386634 0.7821077022356575 1.0758224657458961 1.1533638052271304 1.190408588251429 1.8458720515479587 1.0 20.723209336631218 1.8760827931304478 1.6701111185307371 1.4026481414906156 0.9374832081052928 0.24313609769862288 0.2984238983121844 0.4712848484264688 2.4699253002297548 0.20260685701669554 0.08999766531297931 75.17661957337823 -1.8760827931304478 -0.4651649333853227 IEDVTPIPSDSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEDVTPIPSDSTR 13 0 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 0 ; 214.82 7.0206e-11 441520000.0 316570.0 380090.0 353200.0 420070.0 373310.0 372290.0 345920.0 355770.0 443080.0 358160.0 False True 314865.6222942332 392741.0658807433 402927.48993056477 473250.81892925286 420848.81571827584 346554.4685763945 329186.5280572731 382319.36396345514 333888.87096781854 335301.9221637971 0.9390510506540412 1.1713057394549824 1.2016855952699614 1.4114169578129256 1.2551339193119464 1.0335594449920882 0.9817615298264334 1.140224194052457 0.9957857348778089 1.0 18.35510122803743 2.729805431089657 24.024704093353208 1.0431775133644996 1.20667711606785 0.33241662710093167 0.11599956881355958 483.3134023795188 1326234.7614864442 0.03945220984357804 0.03774964557974247 536.7912538513006 -2.729805431089657 0.1634996027033504 IEDVTPIPSDSTRR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 0 ;;; 234.47 5.2417e-17 5556070000.0 1885970.0 2681920.0 2615590.0 2803980.0 2571580.0 2508600.0 2727050.0 2423230.0 3541050.0 2848260.0 False True 1875816.1470709671 2771186.0859451233 2983842.336884164 3158963.580501453 2899055.4700511713 2335186.3866092125 2595132.1731573353 2604063.7275126153 2668405.675139015 2666481.6082819332 0.7034798744700859 1.0392669041248903 1.1190185327423698 1.1846935567415504 1.0872212510474017 0.8757556697020757 0.9732421049134594 0.9765916702461207 1.0007215751464797 1.0 21.346505946573675 2.761751483191082 24.8005109033051 0.9655708354548687 1.0413344044601296 0.05177240411172246 0.1238992549720043 2052.7755801937587 2195251.944596347 0.03920926766262745 0.041561478526044145 577.7653374991233 -2.761751483191082 0.07576356900526093 IEDYFPEFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEDYFPEFAR 10 0 P63092-4;P63092;P63092-3;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJY2;A0A0A0MR13;P63092-2;A0A590UJB0;Q5JWF2 P63092-4;P63092-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas 0 ; 115.7 0.0027645 111314000.0 155300.0 171069.0 164944.0 142064.0 162395.0 217535.0 174323.0 159214.0 206654.0 178470.0 False True 154463.88205545198 176762.92825160583 188166.68148105076 160049.2878338501 183075.0406594235 202497.3174723093 165890.33051147076 171095.35715231058 155726.89072172865 167079.89180414594 0.9244911544263945 1.0579545290752912 1.1262078245874323 0.9579207055117247 1.095733536109943 1.2119789837407862 0.9928802845164061 1.0240332053415 0.9320504642430252 1.0 17.350178588805047 1.6967037632549093 2.3877451469650484 0.9737062887920406 1.0616111516083744 0.14919528059163945 0.0802298214606159 0.48275017877351906 5.962889983080097 0.05366096910898685 0.022499244943071105 49.73976891458468 -1.6967037632549093 0.0879048628163338 IEEACEIYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEEACEIYAR 10 0 P54920;M0R0Y2;M0R2M1 P54920 NAPA Alpha-soluble NSF attachment protein 0 ;;; 156.92 2.3479e-05 1427350000.0 690200.0 832660.0 701950.0 731280.0 714710.0 779970.0 780620.0 665260.0 825070.0 778030.0 False True 686484.0398884292 860374.5847464018 800778.4585412242 823859.9730201728 805724.0820819391 726052.5097518887 742858.4283420119 714905.0793218316 621742.553871577 728375.4592950045 0.9424865035305802 1.1812240153988156 1.0994034029047308 1.1310924366089816 1.1061933399867705 0.9968107800537869 1.0198839332959206 0.9815062687776289 0.8536017323721511 1.0 19.474322789736426 2.231459664759643 1.1880536362117884 0.9406039971167246 1.0990679383270996 0.438517977145664 0.06986236891431852 0.41773895489524276 1.1347817482983178 0.04430462984266815 0.02499159944821873 170.3961056032529 -2.231459664759643 0.158463941210375 IEEALMDPGRQPESADDFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEEALMDPGRQPESADDFDR 20 1 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 122.53 2.7652e-05 101390000.0 112600.0 150400.0 134570.0 141060.0 151260.0 155030.0 144570.0 136300.0 179080.0 153400.0 False True 111993.77411103612 155405.9730812802 153516.2862965917 158918.18153679217 170522.0644117392 144313.14100136588 137576.59678896848 146471.39811737617 134948.13354905884 143609.88066765244 0.7798472750647044 1.0821398385597627 1.0689813652297715 1.1065964319305215 1.1873978560456295 1.004897019135758 0.9579883789984729 1.019925630718585 0.9396855767978879 1.0 17.13179548752418 -0.6864470629104802 7.514458479539297 1.0000166474577492 1.0244218687121744 0.0 0.10509165515188731 0.0 0.0 0.10048748321424955 0.02368512693505508 0.20585097914411704 0.6864470629104802 0.024405221254425236 IEEDFPHIR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEEDFPHIR 9 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 0 ;;; 207.68 1.1287e-05 962080000.0 952560.0 1205170.0 1046800.0 1058920.0 1056490.0 1240860.0 1198770.0 1118470.0 1438960.0 1204720.0 False True 947431.5227993651 1245283.3549093492 1194180.3410512912 1192979.1634264865 1191027.7391931685 1155082.2688702506 1140780.9153538898 1201935.91087558 1084347.5890761323 1127833.7381873177 0.8400453814425701 1.104137349988128 1.0588265810975006 1.0577615503361977 1.0560313092844853 1.0241600599098297 1.011479685992885 1.0657030998268957 0.9614427662174059 1.0 20.105122975029083 4.749890921507369 24.88179976271949 1.0410848227165002 0.8400452566274791 0.706170428239078 0.03819908001008383 813.2420433932427 1785876.2564576166 0.008707641763142789 0.13374737913712725 56220.01038665132 -4.749890921507369 -0.20103956608902107 IEEDNLTYQHLLPES(ph)PEPSASHALSDYETSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEEDNLTYQHLLPESPEPSASHALSDYETSEK 32 0 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-3;Q96SN8-2;Q96SN8;Q96SN8-4 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 IEEDNLTYQHLLPES(0.999)PEPSASHALSDYETSEK 164.92 9.1685e-14 110420000.0 66272.0 68449.0 59480.0 65954.0 69728.0 84733.0 77957.0 65960.0 92526.0 78518.0 True False 65915.19891551133 70727.2835867057 67854.26699057205 74303.76963758406 78607.44748976441 78875.6071500273 74185.92208533996 70882.27013809327 69724.2070848795 73506.91401735817 0.8967210744277183 0.9621854560511671 0.9231004715358982 1.0108405533122737 1.0693884859756428 1.0730365735582552 1.009237336066393 0.9642939182748835 0.9485394403635907 1.0 16.165592334932843 3.734901754214873 24.130537895878508 1.0112701879022556 0.9308206420671813 0.48191020967763143 0.039588138791168764 190.10240765330056 1253746.1603853607 0.011894581966721546 0.01925576614481796 5431.274516928435 -3.734901754214873 -0.08044954583507435 IEEEEQEPEPPEPFEYIDD ddPTM_BT-474_Trastuzumab_2h_R1 8 IEEEEQEPEPPEPFEYIDD 19 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;;;;;;; 229.97 1.5782e-19 1473879000.0 4331750.0 4401490.0 4039220.0 4240550.0 4169090.0 4565990.0 4588310.0 4375800.0 5034380.0 4700800.0 False True 4308428.339302667 4547990.9338931125 4607907.066470382 4777403.195206616 4699998.899367566 4250353.858484335 4366355.916253656 4702344.415862171 3793724.5062358165 4400790.919442645 0.979012277149564 1.0334485362165557 1.0470633917445837 1.0855783159568209 1.067989592189673 0.9658159036154885 0.992175269441487 1.0685225683154511 0.8620551568299198 1.0 22.06933140057753 2.739345749057707 24.999648806326753 0.9902931120291216 1.0447425881978119 0.2451451483763708 0.054702027207142075 127.52221852665105 4060498.5957932593 0.01744950781488835 0.01748840245780374 548.7136311239348 -2.739345749057707 0.054449476168690225 IEEELGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEEELGSK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 114.28 0.0062496 400990000.0 310380.0 251060.0 230340.0 210490.0 223140.0 303030.0 280960.0 284600.0 352420.0 302680.0 False True 308708.94856645993 259416.38033102514 262769.86984882917 237138.01241797433 251555.55634560034 282082.2493558913 267368.89142857125 305838.2971695175 265570.81318605825 283362.7032626143 1.0894480643077267 0.915492326068769 0.9273269446660376 0.8368709420385506 0.8877511170284969 0.9954812193278086 0.9435571031406333 1.079317403624828 0.9372116024032036 1.0 18.112290354926138 2.355600721960227 2.136286683831315 1.0079463885118305 0.9270507644254512 0.119267029592523 0.07150631194041265 0.5253437209830529 4.913743108144997 0.031207930927956117 0.023259234212211502 226.77789614628517 -2.355600721960227 -0.08089562408637929 IEEGERPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEEGERPDR 9 1 Q5JR04;Q9HCE1;Q9HCE1-2 Q5JR04 MOV10 Putative helicase MOV-10 0 98.943 0.0051732 115600000.0 130160.0 142270.0 118510.0 133190.0 136620.0 144370.0 151410.0 123650.0 156640.0 157960.0 False True 129459.2330221354 147005.37094596878 135195.17789261398 150051.84034372176 154017.74718981763 134390.0417104249 144085.71985763084 132877.3908819776 118038.17086846428 147878.85756364002 0.8754411222471226 0.9940932285246028 0.9142292557570808 1.0146943438425375 1.0415129635657059 0.9087846898775901 0.9743496956326106 0.8985557034398477 0.7982085662087718 1.0 17.174056277594232 1.648605115059469 4.975611723816707 0.88375666709744 0.9630646493190913 0.14387193495740014 0.06619377341586043 0.22650025911543487 12.435269995638524 0.03437211851702279 0.016356393480009883 44.52512168672152 -1.648605115059469 0.07930798222165125 IEEIKDFLLTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEEIKDFLLTAR 12 1 J3KT73;J3QL01;P63173;J3KSP2 J3KT73 RPL38 60S ribosomal protein L38 0 ; 143.94 5.7118999999999986e-05 1021480000.0 1951110.0 2839000.0 2228050.0 2037350.0 2259200.0 2455300.0 2190300.0 2309400.0 2487600.0 2550000.0 False True 1940605.4405487021 2933494.398788258 2541740.073442229 2295278.3011057987 2546895.728672493 2285570.8901545075 2084346.821241458 2481739.154895584 1874564.312132222 2387256.816835161 0.8129018322885787 1.2288139165007208 1.0647116202654183 0.961471042796602 1.066871276986851 0.957404697323072 0.8731137791889197 1.0395777854289179 0.7852378088995776 1.0 21.18692234665483 2.6155265173155495 5.231189794567984 0.9354165521958708 1.036290926317077 0.14388879680927225 0.1165623276899611 0.4423972324596989 17.11685453726028 0.036540784949878155 0.03428901304019648 412.597428876367 -2.6155265173155495 0.10087437412120615 IEELEEALR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEELEEALR 9 0 G8JLD3;X6RLX0;Q8IUD2-3;Q8IUD2;Q8IUD2-2;Q8IUD2-5;K7EPD6 G8JLD3 ERC1 ELKS/Rab6-interacting/CAST family member 1 0 88.948 0.028938 35590000.0 43829.0 45090.0 39887.0 39114.0 34256.0 40977.0 43153.0 40806.0 55634.0 50111.0 False True 43593.029533859655 46590.79339251943 45502.7428959809 44065.828389551214 38618.298548780534 38144.35643948245 41065.524529531394 43851.150928669456 41923.746157406385 46912.87307781446 0.9292338472118692 0.9931345137450696 0.9699415088158302 0.9393120800011364 0.8231919303838906 0.8130893278740857 0.8753572705175388 0.9347359914608828 0.8936512178196249 1.0 15.517696237837775 3.4634173791719833 23.662227234342623 0.8852310742833447 0.9649431563681332 0.29711671894147207 0.0519029978155535 141.30596371816668 243988.62950933265 0.01476126875597031 0.019999983351388983 2906.814910048616 -3.4634173791719833 0.07971208208478853 IEELTGLLNQYR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEELTGLLNQYR 12 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;E9PIK8 E9PP16 PPFIBP2 Liprin-beta-2 0 115.18 0.0004603 0.0 60874.0 60147.0 73314.0 67114.0 48674.0 75063.0 75337.0 64660.0 84746.0 71975.0 False True 60546.2611477372 62148.95653537068 83635.97394328848 75610.62551864653 54872.345386599256 69874.07148929569 71692.66149471201 69485.25753682708 63861.48383822051 67381.49387910237 0.8985591987077471 0.9223445928177245 1.2412306277054397 1.122127473966503 0.8143533517534153 1.0369920206082928 1.0639814787031117 1.0312216832339653 0.947759988117842 1.0 16.040064793584683 IEEMLENAER ddPTM_BT-474_Trastuzumab_2h_R1 2 IEEMLENAER 10 0 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 ; 163.88 1.4724000000000003e-05 247800000.0 210679.0 227660.0 213058.0 220355.0 204861.0 221167.0 235864.0 211636.0 260990.0 210544.0 False True 209544.72767263756 235237.52547662408 243054.71446666593 248251.92040649254 230948.83404372187 205878.24586111782 224454.3572320206 227429.3529858326 196672.5115868263 197106.90166421287 1.0631019304925888 1.1934514899806488 1.233111131140039 1.2594785789358571 1.1716932897517784 1.0445004417544324 1.1387442820972158 1.1538375930299813 0.997796170130427 1.0 17.588618767421003 2.8810362475894014 5.817920216123868 1.0891744848583818 1.1937633604297064 0.3990271721201555 0.06923972580654088 0.2756232216150242 12.103234584140878 0.021788936567207724 0.023221546956055213 760.3897388214632 -2.8810362475894014 0.10458887557132468 IEEPVSMEMDNHMSDKDESCYDNAEAAFS(ph)DDEEDLNSK ddPTM_BT-474_Trastuzumab_2h_R1 4 IEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSK 38 1 Q68E01-2;Q68E01-3;Q68E01;Q68E01-4 Q68E01-2 INTS3 Integrator complex subunit 3 1 IEEPVSMEMDNHMSDKDESCYDNAEAAFS(0.999)DDEEDLNSK;IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK;IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK;IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK 175.28 5.4063e-19 956134000.0 239040.0 263509.0 277659.0 258224.0 247789.0 370472.0 378224.0 335874.0 492620.0 376883.0 True False 237753.03519984096 272279.73777044547 316750.97374470806 290915.13192369696 279343.4603895313 344862.1426372826 359927.86016400903 360938.6234136139 371220.40176980855 352830.0042742304 0.6738458530160942 0.7717023339058807 0.8977438707239859 0.8245192540303027 0.7917225207763705 0.9774172787449366 1.0201169282764908 1.022981659839454 1.0521225442076763 1.0 18.42861372574337 2.6563947965116257 3.1856861388593165 1.023859108777213 0.7968332500670603 0.8142518379474003 0.05341715680021889 0.11586213952955014 2.2863233497907585 0.019428379041412338 0.018441567793766676 453.3094747978424 -2.6563947965116257 -0.2270258587101528 IEEVLSGVLDTELR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEEVLSGVLDTELR 14 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;P18583-8;J3QSZ5 P18583-7 SON Protein SON 0 ; 147.72 1.8511e-05 24730000.0 33278.0 40275.0 35007.0 44436.0 41095.0 37753.0 39100.0 41596.0 43008.0 40771.0 False True 33098.83494553338 41615.529028248384 39935.6813137013 50061.59304387427 46328.204660851705 35143.22397100277 37208.58362349494 44700.10474020819 32409.254677674326 38168.95987419078 0.8671662799990069 1.090297696489972 1.0462868636015714 1.3115786547205623 1.2137664954338478 0.9207278397640077 0.9748388152608467 1.1711114184810065 0.8490997602370853 1.0 15.220112252380297 2.7339926588594996 24.99473025196196 1.007631685719946 1.1130806203858188 0.16368656252104008 0.13249050721257066 880.1516518478537 4815960.173413782 0.04439061506454985 0.04311015708993301 541.9917287124363 -2.7339926588594996 0.10544893466587268 IEEVLSPEGSPSKS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 3 IEEVLSPEGSPSKSPSK 17 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 IEEVLSPEGSPS(0.008)KS(0.991)PS(0.001)K;IEEVLSPEGS(0.001)PS(0.014)KS(0.983)PS(0.002)K;IEEVLSPEGS(0.007)PS(0.259)KS(0.733)PSK 186.06 3.2980000000000004e-10 2244020000.0 1670880.0 1119680.0 923480.0 887290.0 893880.0 1571540.0 1459420.0 1302720.0 2308900.0 1415050.0 True False 1661884.1677322197 1156947.8719391467 1053497.9569679461 999620.8230241069 1007710.3195581477 1462903.1388072397 1388822.279074195 1399935.5814781243 1739902.532674906 1324740.2975147455 1.254498086039933 0.8733393813939361 0.7952486679421933 0.7545787086717503 0.7606851859558013 1.104294284360257 1.04837324091346 1.0567622832221888 1.3133914141051026 1.0 20.337278130350548 2.719392581301865 23.844417490393457 1.099051664318896 0.8743453861730788 0.3286004489388089 0.15432855554173514 538.2343818678029 669544.7417276502 0.05088995206763561 0.04806093658346744 524.0739601598877 -2.719392581301865 -0.22470627814581712 IEEVPELPLVVEDKVEGYK ddPTM_BT-474_Trastuzumab_2h_R1 4 IEEVPELPLVVEDKVEGYK 19 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ;;; 202.97 4.8099e-16 493961000.0 795210.0 616105.0 518711.0 494830.0 503822.0 774740.0 775390.0 746350.0 1172560.0 770140.0 False True 790928.6777161374 636611.6824816623 591741.0000831638 557475.4272639366 567980.745313046 721184.0473417926 737881.4234225517 802046.4268885069 883598.2994990189 720989.0058499745 1.0970051849593891 0.8829700277206867 0.8207351225634293 0.7732093315441453 0.7877800364562468 1.000270519370248 1.023429507850349 1.1124253218576805 1.2255364399868265 1.0 19.45961773483682 2.2905067680065567 1.934210240524076 1.1154157690427124 0.8668660105555926 0.5060144143907108 0.10139332284276291 0.2679423978387912 2.037882337558046 0.049477291731441664 0.03372474224323173 195.21211554886239 -2.2905067680065567 -0.2485497584871198 IEEVPELPLVVEDKVEGYKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEEVPELPLVVEDKVEGYKK 20 2 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ; 113.5 7.7582e-05 1190320000.0 935640.0 751160.0 683600.0 762440.0 722440.0 1001140.0 1022150.0 897800.0 1617310.0 1012990.0 False True 930602.6181993756 776161.9065141906 779844.9380422829 858964.8258252653 814438.4517626396 931933.5482300662 972704.6995078098 964798.3949360261 1218745.6213436907 948340.1109356273 0.9812962748999914 0.8184425582805239 0.8223262193063754 0.9057560846791719 0.8588041804528536 0.9826997060270134 1.0256918254234175 1.0173548327341773 1.28513558299383 1.0 19.855045031832532 2.187818534437374 1.1442997091948761 1.1153870426045085 0.8694624047377858 0.5755929053254945 0.08421604072284859 0.33872557093720174 0.8432076466718104 0.05603741823281134 0.030296297404487485 154.10564035515407 -2.187818534437374 -0.2459246378667227 IEFTFER ddPTM_BT-474_Trastuzumab_2h_R1 2 IEFTFER 7 0 O43747;O43747-2;B3KNW1 O43747 AP1G1 AP-1 complex subunit gamma-1 0 ; 127.31 0.0089977 423040000.0 220075.0 269090.0 246216.0 223221.0 192751.0 227560.0 231148.0 200283.0 302152.0 232966.0 False True 218890.14065263118 278046.49798165984 280881.07265216316 251480.75571263544 217296.69732531506 211829.31281862073 219966.48816889053 215229.13447646677 227690.68822936772 218097.91042777261 1.0036324521555695 1.2748700683849072 1.287866867230635 1.1530635723166096 0.9963263604823812 0.9712578740582302 1.0085676095541352 0.9868463849759996 1.0439838134293906 1.0 17.734616422178284 3.3100649675840974 4.180033517706335 0.9982068416323702 1.2002641453908982 0.5811808974498764 0.07438574959266064 0.1404665027912253 4.756160628769731 0.02081697383553835 0.028174390342228947 2042.0433980178645 -3.3100649675840974 0.20205730375852804 IEFYELDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEFYELDKK 9 1 O15305;H3BV55;H3BPH4 O15305 PMM2 Phosphomannomutase 2;Phosphomannomutase 0 107.24 0.0044977 881180000.0 311670.0 253860.0 216840.0 275990.0 246470.0 309130.0 303640.0 264340.0 490640.0 260410.0 False True 309992.00334979245 262309.57663838955 247369.18719293267 310930.3057021078 277856.49355785694 287760.5707137468 288951.77318255766 284066.39309132216 369728.346239168 243790.41085178248 1.2715512569452891 1.0759634709253032 1.0146797256243438 1.2754000644067351 1.1397351216032268 1.1803604978076718 1.1852466722254797 1.165207409507285 1.5165828095837295 1.0 17.89528185515847 1.422031597170297 24.999947605263078 1.2858260818719671 1.1601917444779228 0.06297150417625341 0.13796386027797466 155.45101578462712 70547.72816207593 0.08021462992100144 0.030821498527776766 26.426010132227535 -1.422031597170297 -0.12563433739404428 IEGCIIGFDEYMNLVLDDAEEIHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEGCIIGFDEYMNLVLDDAEEIHSK 25 0 A6NHK2;P62304 A6NHK2 SNRPE Small nuclear ribonucleoprotein E 0 128.12 8.6866e-05 23399000.0 27294.0 30159.0 26814.0 27191.0 19426.0 31905.0 31093.0 29134.0 46980.0 29078.0 False True 27147.052136648486 31162.824083499498 30589.17812853392 30633.37781204397 21899.785953077146 29699.482446291513 29588.912803205345 31308.127019454387 35402.408499747486 27222.217145071732 0.9972388359102905 1.1447570165731769 1.1236843040932005 1.1253079662392522 0.8044820830121785 1.091001599466275 1.0869398567178088 1.150094676440503 1.300496881318746 1.0 14.732496953148775 1.8626966805961491 2.5350593354853355 1.168653426358106 1.049579486532781 0.13409778471025746 0.11433054716673463 0.5207964549047014 6.1027446206653115 0.06573176614554439 0.03257067882084044 72.89482213302003 -1.8626966805961491 -0.1190739398253251 IEGDMIVCAAYAHELPK ddPTM_BT-474_Trastuzumab_2h_R1 5 IEGDMIVCAAYAHELPK 17 0 P46777;A0A2R8Y6J3;A0A2R8Y4A2;Q5T7N0 P46777 RPL5 60S ribosomal protein L5 0 ;;;; 211.17 2.7160000000000005e-12 3512800000.0 3064470.0 2760280.0 2679020.0 2584370.0 2315640.0 3168200.0 3194030.0 3038670.0 4293140.0 3443230.0 False True 3047971.234014622 2852154.2511755065 3056202.7295407183 2911550.977018574 2610523.028126407 2949189.7911405996 3039522.566520498 3265430.9854536112 3235153.1721286895 3223480.1135024824 0.9455529820852033 0.8848059087532231 0.9481065872685008 0.9032321821446011 0.8098461712828546 0.9149086351695057 0.9429320050055762 1.013014155655996 1.0036212596992025 1.0 21.620187652472932 1.9693990311982112 2.5227108349416105 1.0067992485813833 0.898391773525774 0.6239015758449219 0.03624841605242523 0.191064226513604 2.2524658779535556 0.020109726652752985 0.010884243894868072 93.19637735866803 -1.9693990311982112 -0.10840747505560921 IEGDNENKLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEGDNENKLPR 11 1 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ; 157.03 2.8075e-05 972020000.0 3045600.0 2880650.0 2566450.0 2586000.0 2554710.0 3187800.0 3302700.0 2966000.0 4810700.0 3430400.0 False True 3029202.8279979713 2976530.693860299 2927783.852016702 2913387.334851448 2880037.1755474955 2967434.889274033 3142935.783460787 3187337.981042827 3625167.4450773806 3211468.935086802 0.9432452529440692 0.9268439938310806 0.9116650078813754 0.9071821629726282 0.8967974574132542 0.9240117059372479 0.9786598740292151 0.9924860073281939 1.1288190913107483 1.0 21.61480191047902 1.7487283407079794 1.7123441297179876 1.0593504267554186 0.9176155963956116 0.7182079155504317 0.03492664761579799 0.16796836751686442 0.9711116750528896 0.024413339719400736 0.009823982799792087 56.06971398064094 -1.7487283407079794 -0.14173483035980694 IEGEMQVPDVDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEGEMQVPDVDIR 13 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 122.34 0.00054932 97310000.0 94509.0 108070.0 107680.0 93287.0 89618.0 118350.0 99990.0 93490.0 110470.0 106250.0 False True 94000.17404493706 111667.04462030543 122840.40802866164 105097.12463506845 101030.32109249815 110168.74306593317 95153.10170110634 100466.69853260083 83246.1487221606 99469.03403479849 0.9450194722113398 1.1226312359808337 1.2349613044969034 1.0565813336269156 1.0156962121211859 1.1075682410607453 0.9566102920816316 1.0100299003351467 0.8369051688291007 1.0 16.601959845933674 2.088741117396012 1.1937769672881173 0.9334100347971095 1.091855508085633 0.34106790697664524 0.08462830009117141 0.5334375213386666 1.4216953012390188 0.06049003240002557 0.030147948996431147 122.67077736165481 -2.088741117396012 0.15844547328852343 IEGVYAR ddPTM_BT-474_Trastuzumab_2h_R1 3 IEGVYAR 7 0 C9K025;P18077;F8WBS5;F8WB72 C9K025 RPL35A 60S ribosomal protein L35a 0 ;; 150.02 0.004599499999999999 1384670000.0 927720.0 1089940.0 1099620.0 1018310.0 878720.0 1004960.0 1080810.0 866010.0 1245960.0 1004400.0 False True 922725.2585993819 1126217.9940173575 1254436.9379316212 1147227.9415903229 990619.7834185075 935489.4806213808 1028527.0912048497 930636.0637096761 938909.8530086295 940298.3320898972 0.9813111723260663 1.1977241217840269 1.3340839764583254 1.2200680384495695 1.0535164740926066 0.9948858236748881 1.0938306025906226 0.9897242523457999 0.998523363241343 1.0 19.842759033292747 3.1552771802999033 4.926236925352685 1.020053863280699 1.1948670899570846 0.4600865112580075 0.08590928016888032 0.18574691760709366 7.889101170786885 0.0259582604448177 0.0316052251976504 1429.8062143390778 -3.1552771802999033 0.17481322667638555 IEGYEDQVLITEHGDLGNSR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEGYEDQVLITEHGDLGNSR 20 0 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 ;;; 333.01 6.737499999999997e-80 3179480000.0 2218610.0 2370080.0 2295210.0 2289180.0 2259300.0 2620370.0 2426070.0 2198430.0 2707310.0 2664180.0 False True 2206665.2502707443 2448966.680056387 2618355.617677045 2578989.9532850855 2547008.4630797473 2439229.989587494 2308711.7256125957 2362488.0100013437 2040129.7265953918 2494149.7514807484 0.8847364714009943 0.9818843790764622 1.0497988808100063 1.0340156807962186 1.0211930785501622 0.9779805675819389 0.9256508051458978 0.947211773711166 0.8179660124193384 1.0 21.250116658081453 2.2885245643267145 2.7628019041449026 0.9194061368105458 0.9992204426637352 0.2449077369810453 0.05938702143017596 0.3686367616344226 5.776810379246042 0.02428152879925572 0.018199025996214903 194.32316007219967 -2.2885245643267145 0.07981430585318938 IEHAPS(ph)PSSGGTLK ddPTM_BT-474_Trastuzumab_2h_R1 3 IEHAPSPSSGGTLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 IEHAPS(0.989)PS(0.011)SGGTLK;IEHAPS(0.994)PS(0.005)SGGTLK;IEHAPS(0.97)PS(0.03)SGGTLK 257.35 1.5577e-24 2616900000.0 2944200.0 2365710.0 2262940.0 2077530.0 2152260.0 2826560.0 2608580.0 2547530.0 3460140.0 2800110.0 True False 2928348.7543313717 2444451.2272481057 2581542.2821729127 2340545.084986049 2426337.5535555333 2631166.560206543 2482393.019656688 2737639.624695221 2607434.8605005625 2621404.5825052173 1.1170914912847276 0.9324967399393186 0.9847935337420487 0.892859156730871 0.9255868284310151 1.0037239492776031 0.9469705806664612 1.0443407488358476 0.9946709019668745 1.0 21.32190860293284 1.7445863318356551 24.999999999889045 1.0157057034178403 0.9673086431062194 0.08904903550034315 0.058723707272942155 2.564266866350344 10675.641030464682 0.02651369517059506 0.014702916512074662 55.53750071442975 -1.7445863318356551 -0.04839706031162083 IEHAPS(ph)PSSGGTLKNDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEHAPSPSSGGTLKNDK 17 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 IEHAPS(0.998)PS(0.001)SGGTLKNDK;IEHAPS(0.927)PS(0.071)S(0.002)GGTLKNDK 124.31 3.0612e-05 612200000.0 535770.0 528430.0 426380.0 495310.0 455770.0 668250.0 673360.0 595180.0 1143170.0 732460.0 True False 532885.4738496436 546018.4731073196 486410.59783860267 558016.1952147211 513809.60793956404 622055.4503912958 640787.004315001 639595.3538628021 861451.0711931958 685713.7757094451 0.7771252273564373 0.79627753218521 0.7093493160981902 0.8137742232717915 0.7493062355469997 0.9071648731975848 0.9344817429867694 0.9327439181181266 1.2562837465266488 1.0 19.387246980085344 1.9871253663060826 1.0016605789694153 1.0970136536627642 0.7678090594699479 0.7190330708334121 0.08040086002523099 0.2784337816379101 0.5140215616777021 0.06231957743849381 0.029187349268006084 97.0790161485329 -1.9871253663060826 -0.3292045941928162 IEHAPSPS(ph)SGGTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEHAPSPSSGGTLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 IEHAPS(0.393)PS(0.606)S(0.001)GGTLK 193.32 1.752e-07 444590000.0 622690.0 534190.0 499580.0 498790.0 469740.0 603900.0 549090.0 579580.0 777830.0 629510.0 True False 619337.5062273622 551970.1912253264 569916.5215727972 561936.7628579086 529558.6046328869 562153.81442769 522528.41897250264 622831.2026476065 586144.2188880076 589334.1328493736 1.0509106323655906 0.9365997325771779 0.9670516092752101 0.9535113130831209 0.8985710738872738 0.9538796127584374 0.8866420420044707 1.0568388422307695 0.9945872574087248 1.0 19.168726300555853 1.7156258932706452 13.36070837639619 1.0188137997032356 0.9481285502624738 0.32606115132710567 0.04443579728599097 0.13181576197687703 61.978546357991206 0.020095844932521457 0.011045240080898553 51.95482583128416 -1.7156258932706452 -0.07068524944076182 IEHLYK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEHLYK 6 0 O60547;O60547-2 O60547 GMDS GDP-mannose 4,6 dehydratase 0 85.84899999999998 0.054247 717540000.0 1530600.0 1599600.0 1411700.0 1290800.0 1398200.0 1735000.0 1712100.0 1459700.0 2025100.0 1685500.0 False True 1522359.419665648 1652841.7190213806 1610455.0892836337 1454215.1476512933 1576252.4822193163 1615063.5337506898 1629279.1821428558 1568630.226206412 1526041.2399497363 1577929.9469708498 0.9647826398048401 1.0474747134334697 1.0206125388362282 0.9215967733187068 0.9989369206441936 1.023533102246475 1.0325421513613966 0.9941063791949127 0.9671159628342664 1.0 20.58960172689282 3.00404465265077 24.997809961849597 1.0054221045723604 0.9907513213071825 0.035873833361181995 0.03500609944193234 519.6384488217689 3211548.2783858837 0.010643342751027155 0.012652902149623058 1009.3566592890395 -3.00404465265077 -0.0146707832651779 IEHSFWR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEHSFWR 7 0 Q16531;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 ;;; 139.31 0.0027006 1171910000.0 448799.0 575632.0 619478.0 513115.0 379974.0 472145.0 539660.0 410279.0 722613.0 514488.0 False True 446382.7160502561 594791.5631431082 706695.1178006992 578075.3063891336 428361.4366176535 439506.72745978076 513554.5840986005 440896.1023345486 544534.7086681151 481652.9353646623 0.9267725436206407 1.2348965810678345 1.4672289233857905 1.2001905603491636 0.8893570560165662 0.9124967278088476 1.0662336848622862 0.9153813253535837 1.1305541162244648 1.0 18.877634432546238 3.3136555124610947 6.984824016403386 0.979555235032114 1.230538925735198 0.3712946051108048 0.1400976088239602 0.21899917307452735 16.76996054340781 0.039378857086721814 0.05328622205019862 2058.9960452468204 -3.3136555124610947 0.250983690703084 IEIDNGDELTADFLYEEVHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEIDNGDELTADFLYEEVHPK 21 0 Q12792;Q12792-3;Q12792-4 Q12792 TWF1 Twinfilin-1 0 160.57 2.1036e-11 29619000.0 51523.0 46009.0 38487.0 33136.0 41569.0 56633.0 48603.0 50898.0 58207.0 49784.0 False True 51245.60589274344 47540.38175197221 43905.63506499904 37331.01420248939 46862.56575123359 52718.094009742315 46251.887208509615 54696.267214807056 43862.66478384001 46606.742497773266 1.0995320236163642 1.0200322786825007 0.942044706666567 0.8009788327144501 1.0054889751943625 1.1311259097814235 0.9923861812637816 1.1735698373989618 0.9411227310283622 1.0 15.508251061133898 2.995807528349477 24.998420082868023 1.0636866436656822 0.9597692787690215 0.13146606161900332 0.09459273138073046 290.28080586196586 1730873.5169019492 0.028036821018360775 0.03278321118789691 990.392922950262 -2.995807528349477 -0.1039173648966607 IEIESFYEGEDFSETLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEIESFYEGEDFSETLTR 18 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;; 249.66 2.401e-24 587670000.0 356963.0 426394.0 387432.0 349790.0 398822.0 424830.0 373923.0 372282.0 564834.0 432761.0 False True 355041.15087031736 440586.2665293836 441979.05798068707 394073.37813522335 449609.6176968051 395462.50204225123 355834.9159654243 400063.5732496921 425638.2290878326 405141.8224746672 0.8763379418635987 1.0874865098799635 1.0909242972769695 0.972680074666604 1.109758590092037 0.9761088095687253 0.8782971695983671 0.9874655023419788 1.0505906955938793 1.0 18.62806749543356 2.5148258264162044 24.60011232055495 0.969454873206061 1.0324260386958788 0.08869241341948764 0.07517794595120894 914.8800121587051 596906.491841498 0.02383446746282526 0.022465074238177018 327.20944137893395 -2.5148258264162044 0.06297116548981774 IEINFPAEYPFKPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEINFPAEYPFKPPK 15 1 P68036-2;P68036;P68036-3 P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 0 ; 146.16 3.5872e-06 1190740000.0 496164.0 504598.0 421842.0 394355.0 415072.0 568159.0 501976.0 529983.0 712560.0 558556.0 False True 493492.7081530033 521393.23939406814 481233.6868836058 444280.3025658707 467928.9588755088 528883.5056324254 477693.50314546056 569533.0226591442 536959.135814817 522908.47787614964 0.943745854259962 0.9971022874055594 0.9203019404814192 0.8496330072336253 0.894858237479824 1.0114265268380118 0.9135317619742279 1.0891638723708694 1.0268702048888856 1.0 18.996198935118272 1.7467372090077162 24.999983977413443 1.0438684985582687 0.9332738532062756 0.497978705509605 0.048565631310283096 1.528983692060862 4686.826295524424 0.02350130570485717 0.013032669623602434 55.81323674116315 -1.7467372090077162 -0.11059464535199304 IEIPIHIVPHVTIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEIPIHIVPHVTIGK 15 0 X6RJS7;P46736-2;P46736-3;P46736;A0A087WZR3;H9KVA9;A0A0D9SF50;P46736-4 X6RJS7 BRCC3 Lys-63-specific deubiquitinase BRCC36 0 ; 178.23 4.164500000000001e-07 207660000.0 358190.0 429150.0 406120.0 403300.0 408460.0 474260.0 463170.0 272773.0 546470.0 427570.0 False True 356261.5448386502 443433.99832334666 463298.16594167944 454357.73864871956 460474.959867903 441475.52248795587 440764.69761877693 293128.70637322817 411799.7908228393 400282.1165389059 0.8900261343652183 1.1078036714644146 1.1574290901318562 1.1350937748040955 1.1503760493960178 1.1029109326822653 1.1011351229725406 0.7323052773573939 1.0287738917329672 1.0 18.61065763611038 1.7742472125144828 24.99999999999903 0.8932327666984485 1.099536153394017 0.35712093010591717 0.10336618249767085 34.20395967463296 23971.89965541328 0.04613016292002882 0.025599824442113443 59.463054256332605 -1.7742472125144828 0.20630338669556836 IEKEQSK ddPTM_BT-474_Trastuzumab_2h_R1 3 IEKEQSK 7 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;G3V576;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4;A0A0G2JNQ3;O60812;B2RXH8 B4DY08;P07910;P07910-2 HNRNPC;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 ;; 120.15 0.0042142 2349700000.0 2924940.0 2119280.0 1868100.0 1834990.0 2329650.0 1688330.0 2365000.0 2571200.0 4074770.0 2886020.0 False True 2909192.448031381 2189818.9536681892 2131112.2421837156 2067299.5458542346 2626317.118582632 1571619.721001329 2250595.9148226464 2763076.0002890467 3070597.532620609 2701831.7327539665 1.076748197440872 0.8104942018117891 0.7887657163651273 0.7651474075134369 0.9720505858096637 0.5816867504918166 0.832988926563766 1.022667683850413 1.1364873302049645 1.0 21.365506397251796 1.6751732225363212 4.024601862866565 1.0696691131193001 0.8227078394787096 0.3919558451530851 0.1261620290430099 0.16860371049934256 6.39628813124726 0.06968199289340868 0.03255924779816467 47.33400175391041 -1.6751732225363212 -0.2469612736405905 IEKLS(ph)DDEEVDITDEVDELSSQTPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEKLSDDEEVDITDEVDELSSQTPQK 26 1 A0A590UK32;A0A590UJW2;A0A590UJD8;Q5VVJ2 A0A590UK32 MYSM1 Histone H2A deubiquitinase MYSM1 1 IEKLS(0.999)DDEEVDIT(0.001)DEVDELSSQTPQK 226.28 9.615299999999998e-35 71935000.0 69208.0 52837.0 47900.0 42633.0 41768.0 79684.0 71910.0 73202.0 109750.0 74802.0 True False 68835.3918177316 54595.647604359 54643.90364573635 48030.33342874003 47086.90722166818 74175.63263595974 68431.43857712336 78664.70495222419 82703.583074655 70028.07231878587 0.9829685373085113 0.779625167401803 0.7803142630712893 0.6858725627930118 0.6724004483133053 1.0592271096410182 0.9772000900668204 1.1233310063730175 1.1810061356275372 1.0 16.095645754126902 2.7231570200178927 23.109875697331816 1.0720234487152747 0.7749641780656559 0.6955326212169879 0.09519721072688925 170.42494337740771 255686.14080367814 0.03193842312269295 0.030241149294230114 528.6363467310454 -2.7231570200178927 -0.2970592706496188 IELFVGGELIDPADDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 IELFVGGELIDPADDRK 17 1 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 176.33 1.7931e-09 75290000.0 34808.0 29559.0 27369.0 28769.0 26053.0 31786.0 29174.0 31332.0 46967.0 33513.0 False True 34620.597595532345 30542.853446207184 31222.317304387434 32411.15245024797 29370.69512177074 29588.708636195646 27762.74216449723 33670.152940672255 35392.612175556416 31374.171648077205 1.1034744752425711 0.9735031027688991 0.9951598931314231 1.0330520535745944 0.93614248851637 0.9430913098867112 0.8848916387629535 1.0731806187060164 1.1280811672911686 1.0 14.937289748573427 1.6055830604403543 15.835047355810254 1.0757062645793387 0.9802001553659995 0.27993924362279643 0.06256012160851807 0.07619377210757157 185.7759904119095 0.031550134548560545 0.015784511603850953 40.32580636782985 -1.6055830604403543 -0.09550610921333924 IELGDVTPHNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 IELGDVTPHNIK 12 0 E7EQ69;Q9GZZ1;A0A087WWJ2;C9J5D1;Q9GZZ1-2;F8WCK0;C9JZU6;C9J5J3;A0A0D9SF32 E7EQ69 NAA50 N-alpha-acetyltransferase 50 0 ; 122.33 0.0003605 403180000.0 643970.0 704350.0 697860.0 626370.0 627730.0 789660.0 797400.0 671040.0 1032680.0 807520.0 False True 640502.9370717925 727793.8639614343 796112.6220921411 705668.3777768376 707667.6946527901 735072.6628596953 758826.7156361851 721116.4122720758 778189.8512030486 755983.3822473459 0.847244730654979 0.962711457754387 1.0530821718931191 0.9334442983112478 0.9360889554861305 0.9723397102652067 1.0037611056745543 0.9538786555444916 1.0293742818654141 1.0 19.527994996432312 4.720175058190723 4.471442028748618 0.9807185571066197 0.8401305763046943 0.551985853615738 0.03686523118783764 0.13426607628991127 6.5957799463977915 0.008707341711089993 0.05730337672712789 52501.90456300407 -4.720175058190723 -0.14058798080192536 IELPELFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IELPELFDR 9 0 H0YHS6;Q9Y2Z4 H0YHS6 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial 0 ; 114.89 0.003638900000000001 34915000.0 46641.0 57164.0 53113.0 51806.0 61318.0 89639.0 47637.0 49881.0 63018.0 63185.0 False True 46389.89003830225 59066.66918363229 60590.84873352803 58364.634288211186 69126.48383973986 83442.46691750897 45332.616318987966 53603.37351058575 47488.05829793717 59152.47920459994 0.7842425315403311 0.998549341935934 1.024316301671025 0.9866811175629053 1.168615158134645 1.4106334686141124 0.7663688306653885 0.906189803561392 0.8028075735200005 1.0 15.85215101575993 IENFDVSFGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 IENFDVSFGDR 11 0 Q9NUQ8-2;Q9NUQ8 Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 0 ;; 194.17 1.4725e-06 617760000.0 376720.0 448530.0 425150.0 392710.0 401350.0 448510.0 447300.0 408580.0 487180.0 438100.0 False True 374691.78137752664 463459.0499078896 485007.4245299544 442427.04573453637 452459.5435121745 417505.5593789756 425662.3901480635 439070.31432720117 367121.0168775431 410140.0829237195 0.9135702580116127 1.1300018437702581 1.1825409042504125 1.0787217932484345 1.1031829424882764 1.0179584409374247 1.037846355112848 1.0705374397870357 0.8951112855405129 1.0 18.645757219344198 1.254715093954685 24.692220675059655 0.9475556777121609 1.0711894493863026 0.3060607195013326 0.07157424689817436 205.33601472019123 313860.36578602856 0.04763684982373116 0.01727612711114717 17.976912060873026 -1.254715093954685 0.12363377167414169 IENHEGVR ddPTM_BT-474_Trastuzumab_2h_R1 17 IENHEGVR 8 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;;;;;;;;; 154.75 0.00041997 82152662000.0 18304026.7 21358716.5 19101084.8 19059045.8 17773031.8 21096027.1 22194366.5 17308382.7 22722102.1 20059692.6 False True 18205479.854015734 22069628.467085715 21790351.510234624 21471919.044111993 20036322.050717227 19637708.40128319 21120740.201681454 18600022.107260503 17122544.498024058 18779465.84430115 0.9694354464049041 1.1752000110153829 1.1603286105630721 1.1433721929118608 1.066927154203243 1.0457011165332204 1.124672042154532 0.990444683649237 0.9117695167682363 1.0 24.16265269233968 1.6211802841138012 4.197258627534915 0.9544864712004658 1.1017488906594937 0.4940613724210938 0.060906054493363976 0.13275333250356097 5.347499964943124 0.03511841444982697 0.01586213826736513 41.80038521910427 -1.6211802841138012 0.14726241945902785 IENIYMR ddPTM_BT-474_Trastuzumab_2h_R1 2 IENIYMR 7 0 E7EPM6;P33121-2;P33121;P33121-3;B7Z3Z9;H0Y9U7 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ; 96.19 0.030042000000000006 261560000.0 384830.0 478430.0 467660.0 468450.0 447260.0 476290.0 479860.0 361570.0 578800.0 470260.0 False True 382758.1180386323 494354.25333295803 533502.4630264109 527755.72196874 504215.90988228616 443365.19336606155 456647.33855678467 388552.1894152577 436162.495522645 440247.6041901584 0.8694155615968 1.1229004965111158 1.2118236600237633 1.1987702305377765 1.1453007468599365 1.0070814449555903 1.0372511609615542 0.8825764994905647 0.9907208838193952 1.0 18.747955627425988 2.407132018432603 2.003130629803045 0.9543444623243877 1.1194299083285228 0.2892868470383837 0.09658560924148332 0.37200377254076733 3.048724896910449 0.04299000489624818 0.03297208938865694 255.3477400138687 -2.407132018432603 0.1650854460041351 IENLSNLHQLQMLELGSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 IENLSNLHQLQMLELGSNR 19 0 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C003;C9J177;Q15435-2;Q15435-5;Q15435-4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 0 ; 202.95 5.2832999999999985e-16 1049070000.0 672780.0 793600.0 722830.0 795180.0 749030.0 815580.0 769520.0 637880.0 824260.0 835780.0 False True 669157.8272328842 820014.4962586695 824598.1810490112 895849.7064683569 844414.5306513627 759200.8742688117 732295.3777481291 685481.8446890081 621132.1675181321 782439.8048527418 0.8552195620451881 1.048022469170008 1.0538806639626466 1.1449439316765835 1.0792070206733473 0.9702994013855114 0.9359127350198523 0.8760825311258524 0.7938401953298269 1.0 19.577620240436204 2.279325952982654 2.0986038594557312 0.8817437283981322 1.0425062039272865 0.3605388891001865 0.08402735837799971 0.31689950787864146 2.8473078664953873 0.03891072245126864 0.026920602455064314 190.25056402940086 -2.279325952982654 0.16076247552915435 IEPELDGSAQVTSHDASTNGLINFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEPELDGSAQVTSHDASTNGLINFIK 26 0 P06744;A0A2U3TZU2;P06744-2;K7EQ48 P06744 GPI Glucose-6-phosphate isomerase 0 263.57 6.042399999999998e-53 126970000.0 91387.0 82377.0 77506.0 70614.0 75076.0 100480.0 95417.0 92040.0 96552.0 108580.0 False True 90894.98254605016 85118.8686470519 88418.17110577114 79553.7251597834 84636.48358968498 93534.05410447808 90801.31518166285 98908.49216965004 72758.05333051554 101650.33143998515 0.8941926824873659 0.8373693173573811 0.8698266877562879 0.7826214045032632 0.8326237838157446 0.9201549348582404 0.8932712160931063 0.9730267552353835 0.7157679891429793 1.0 16.63325539366317 2.742656339189797 24.519837774425756 0.9043964673933312 0.8410954996073899 0.12388155877118401 0.0754669613275882 530.0320442966068 3173144.340925463 0.02246757370444936 0.02306374514590183 552.9124119039942 -2.742656339189797 -0.0633009677859413 IEPEPFENCLLRPGS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEPEPFENCLLRPGSPAR 18 1 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2 A0A2R8Y430 GSS Glutathione synthetase 1 IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR 265.13 3.0798e-31 1362780000.0 713640.0 991160.0 948790.0 792650.0 529604.0 659755.0 820800.0 662070.0 1504770.0 811410.0 True False 709797.8415328581 1024150.161431127 1082371.3849694815 892999.4087277636 597045.9301911596 614147.689746217 781094.7682395052 711477.0253233394 1133939.5963849528 759625.1191169482 0.9344054371951082 1.3482310361480474 1.4248757153103633 1.1755790932320154 0.785974443400734 0.8084878636716932 1.0282634796852361 0.9366159799328645 1.4927621110043583 1.0 19.534928087436427 3.4622273014529577 24.074759531160304 0.9920952611234835 1.2559352220677606 0.18602814169663395 0.21719902121236578 215.50737843317697 348346.8422237857 0.06020113817432299 0.08155015947464839 2898.860399004069 -3.4622273014529577 0.2638399609442772 IEPEPFENCLLRPGSPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEPEPFENCLLRPGSPAR 18 1 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2 A0A2R8Y430 GSS Glutathione synthetase 0 ; 162.37 3.262e-11 892810000.0 464080.0 605930.0 679210.0 472050.0 339410.0 554780.0 633950.0 468550.0 1065060.0 560470.0 False True 461581.4448441351 626098.0137575802 774836.8642008464 531811.4815996233 382631.8516593183 516429.3644116479 603283.4165758219 503515.58024869027 802590.2340728199 524700.3247574912 0.8797048964234417 1.1932487635622362 1.4767226693807833 1.0135527967233844 0.7292388313961214 0.9842367920209196 1.149767568477589 0.9596250592781846 1.5296164233246192 1.0 19.001134157358027 -0.23448777649003527 7.140971446418036 0.9999998836519773 1.0907737571118405 0.014355976274152527 0.23775861592816722 0.0 0.0 0.22907548747989812 0.05399361020021669 0.5827901775866171 0.23448777649003527 0.09077387345986321 IEQFVYSSPHDNK ddPTM_BT-474_Trastuzumab_2h_R1 4 IEQFVYSSPHDNK 13 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ;;; 222.16 1.7912e-11 3125960000.0 4135650.0 4031330.0 3699530.0 3575080.0 3333090.0 4457000.0 4576090.0 4004540.0 5754990.0 4409620.0 False True 4113384.119913907 4165510.3820595513 4220391.667108786 4027684.7614387856 3757539.254727786 4148898.080649469 4354727.0443385895 4303379.109442095 4336749.827415108 4128194.276334385 0.996412437150698 1.0090393288753603 1.0223335881508628 0.9756529106510834 0.9102137649549477 1.0050152204400293 1.0548745414678868 1.0424361891377034 1.0505198004552025 1.0 21.97707943613886 2.42887968983436 6.393012413638786 1.0403603411098292 0.9832864108437197 0.399899941598988 0.031174673663632805 0.2008318834553274 19.127086392727538 0.011585959096125451 0.009712474191617101 268.4600642771463 -2.42887968983436 -0.05707393026610952 IEQHYFEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEQHYFEDR 9 0 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 ; 135.99 0.00020541 654590000.0 308940.0 411190.0 369930.0 337980.0 417590.0 454560.0 369170.0 384770.0 471120.0 403630.0 False True 307276.7013664604 424876.21058039565 422012.9285107988 380768.23334612965 470767.61125015374 423137.33711914334 351311.83673364815 413483.4912224704 355018.78868456907 377869.9878349713 0.8131810179660488 1.1243978729688202 1.11682044644177 1.0076699542288712 1.2458454664458667 1.1197960958570277 0.9297161670512928 1.0942480338053542 0.9395262924125583 1.0 18.527530412137395 -3.3586297602222124 9.679753937436061 1.001601902897854 1.0504823214359817 0.0 0.11930625613647229 0.0 0.0 0.0 0.025178713164451815 0.00043789525554695696 3.3586297602222124 0.048880418538127746 IEQLLTSDWAVHIPEEDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEQLLTSDWAVHIPEEDQR 19 0 Q8TB03-2;Q8TB03 Q8TB03-2 CXorf38 Uncharacterized protein CXorf38 0 106.03 0.00032209 77209000.0 59042.0 62666.0 58923.0 59914.0 68045.0 74633.0 70828.0 55511.0 74326.0 69758.0 False True 58724.124432182856 64751.79992760305 67218.84623210279 67499.10625687914 76710.12741568696 69473.79637718466 67401.77905076479 59653.51269914646 56009.35321737398 65305.984717171465 0.8992150518288107 0.9915140275126624 1.0292907537221219 1.0335822444023421 1.1746263033610902 1.0638197506409748 1.0320919184155914 0.9134463396807375 0.8576450299301124 1.0 15.994927587648135 1.7384811509708624 5.075551782503669 0.9138745523389336 1.037535048586266 0.31930601547127724 0.0717201635876721 0.1900261125895508 11.761514049629254 0.038739211149613775 0.01985892573758582 54.76223328189878 -1.7384811509708624 0.12366049624733244 IEQLQNHENEDIYK ddPTM_BT-474_Trastuzumab_2h_R1 4 IEQLQNHENEDIYK 14 0 O00629;H7C4F6 O00629 KPNA4 Importin subunit alpha-3 0 ;;; 266.28 7.519100000000001e-25 5003150000.0 5457770.0 4616490.0 4334280.0 4005030.0 4117790.0 5509930.0 5171110.0 5080360.0 7566300.0 5727970.0 False True 5428385.972735254 4770147.078922863 4944508.94976288 4512066.38735502 4642166.148446494 5129041.50808008 4920963.653741463 5459482.260745366 5701686.748225613 5362406.050638166 1.012304163741803 0.8895535015210533 0.9220691053737802 0.8414257228465664 0.865687175609173 0.9564813741528742 0.9176782972553583 1.0181031069244835 1.0632702362304454 1.0 22.35444903613855 1.7176567578315851 3.0644331677674925 1.0358792529899774 0.9097021396150821 0.5449517093817839 0.046857121007556526 0.16146087400654768 3.314319212136571 0.027906609619465655 0.012833488593973395 52.198347926153424 -1.7176567578315851 -0.12617711337489534 IEQSQHLFQAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEQSQHLFQAHK 12 0 P53367;P53367-2;P53367-3 P53367 ARFIP1 Arfaptin-1 0 156.0 4.2108e-05 324790000.0 166020.0 201830.0 256620.0 193520.0 175080.0 228410.0 233170.0 127080.0 268220.0 204100.0 False True 165126.166766556 208547.78954118857 292749.865418974 218019.6121579472 197375.4002195382 212620.55431930584 221890.67630410026 136563.35489916464 202120.774963863 191074.16326119856 0.8641993451559874 1.0914494455019728 1.5321268999555147 1.1410208917671103 1.0329779644238235 1.112764544878071 1.161280376775878 0.7147138711395659 1.0578132151104265 1.0 17.543773187053965 1.7665627837091264 24.999999999993513 0.8970345879691363 1.1429923765707173 0.22107959095730634 0.17744172027195126 26.32037792244993 23512.505972615465 0.0838114178022541 0.04648325421552295 58.42016560031854 -1.7665627837091264 0.24595778860158102 IERDS(ph)REHEEPTTSEMAEETYSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 IERDSREHEEPTTSEMAEETYSPK 24 2 P24593 P24593 IGFBP5 Insulin-like growth factor-binding protein 5 1 IERDS(0.981)REHEEPT(0.006)T(0.006)S(0.006)EMAEETYSPK;IERDS(0.996)REHEEPT(0.003)T(0.001)SEMAEETYSPK;IERDS(0.867)REHEEPT(0.044)T(0.044)S(0.044)EMAEETYSPK 232.18 4.471499999999999e-34 5813890000.0 1891670.0 2016390.0 1927794.0 1687468.0 1840761.0 2519110.0 2535180.0 2129976.0 2771820.0 2452434.0 True False 1881485.4589042938 2083504.3222165057 2199210.638514167 1901101.2757800072 2075171.002304757 2344969.8550470904 2412543.6580719193 2288925.624918974 2088742.1014851034 2295917.562485621 0.8194917316052708 0.9074822006940219 0.9578787472374417 0.8280355126173715 0.9038525756378301 1.0213650060276398 1.050797161662911 0.996954621681156 0.9097635453529856 1.0 21.130639410672117 2.816651643435544 5.2279542514905835 1.000146446197833 0.8842122279927881 0.562645874811784 0.04966319439141392 0.17002622964804756 8.261288925229048 0.015666047134365212 0.01659144208166835 655.6191696716655 -2.816651643435544 -0.11593421820504501 IERPGEGS(ph)PMVDNPMR ddPTM_BT-474_Trastuzumab_2h_R1 2 IERPGEGSPMVDNPMR 16 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR 95.429 0.0022744 674710000.0 283330.0 312650.0 292910.0 294790.0 284680.0 375240.0 369010.0 308450.0 401300.0 389200.0 True False 281804.58276092215 323056.3662490837 334149.18198063923 332110.38377450005 320932.31056944316 349300.5420199477 351159.5765449073 331468.10527736373 302404.99214450124 364360.9227891163 0.7734215310570617 0.8866383468790953 0.9170829281658096 0.9114873824345809 0.8808088093332429 0.958666311815537 0.9637684904759953 0.9097246289202364 0.8299600018290828 1.0 18.47500871480236 4.838050671763092 1.867447551764149 0.9201144471756418 0.699266135393639 0.5013552131337979 0.04432531371346427 0.9219392874292986 2.6974415615655065 0.011115709569646654 0.38524464538749525 68873.26502591083 -4.838050671763092 -0.22084831178200282 IES(ph)DEEEDFENVGK ddPTM_BT-474_Trastuzumab_2h_R1 5 IESDEEEDFENVGK 14 0 Q96T23-2;Q96T23;Q96T23-3 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK 361.52 1.2396999999999997e-82 7464620000.0 4040790.0 2950420.0 2694170.0 2512430.0 2804140.0 3902440.0 3668710.0 3650960.0 5556740.0 3603390.0 True False 4019034.8356139753 3048622.9461334483 3073485.71785456 2830503.3803947517 3161230.607560062 3632673.508155644 3491240.4814668098 3923413.1743992283 4187355.883501211 3373418.5651826146 1.1913833868986285 0.9037191463871652 0.9110893470428807 0.8390608297495769 0.9371000207882397 1.0768522903291116 1.03492656307173 1.1630377608320421 1.2412796700413413 1.0 21.685779904712195 2.3384558161729894 1.6326527465373883 1.1407482303978917 0.9468812907701893 0.31504787198661344 0.10684827876179917 0.4003114915818614 2.155391547047498 0.053731237721042435 0.03639761446373732 217.99965995428644 -2.3384558161729894 -0.1938669396277024 IES(ph)DVQEPTEPEDDLDIMLGNK ddPTM_BT-474_Trastuzumab_2h_R1 1 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 IES(0.998)DVQEPT(0.002)EPEDDLDIMLGNK 63.857 0.0075884 0.0 40844.0 27829.0 25563.0 23393.0 29155.0 33882.0 36658.0 32893.0 49597.0 34528.0 True False 40624.10044219499 28755.27144201427 29162.048202420832 26354.551401461667 32867.716434776274 31539.817089648954 34884.712492840874 35347.64268726964 37374.4839157509 32324.393479091956 1.2567629604085673 0.8895842534714142 0.902168457430869 0.8153146452232214 1.0168084501271695 0.9757280398795268 1.079207024113383 1.0935284125325717 1.1562315605372593 1.0 14.980335679734539 2.262243625535738 2.4638049063144827 1.0945441457760172 0.9595861731050525 0.1587609568213797 0.11553144740753764 0.45425839164744514 5.653970681131813 0.049457385665372285 0.035297278206095954 182.9126010520231 -2.262243625535738 -0.13495797267096477 IES(ph)PKLER ddPTM_BT-474_Trastuzumab_2h_R1 7 IESPKLER 8 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3;Q5TBM3 Q92598-2 HSPH1 Heat shock protein 105 kDa 1 IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER 125.72 0.00075694 26487910000.0 18781700.0 15560420.0 13319850.0 13662280.0 13727350.0 18380400.0 20024100.0 17997970.0 31500300.0 18805600.0 True False 18680581.414043035 16078339.173227457 15195169.101788316 15391923.24717487 15475446.654121986 17109806.21080762 19055457.783509582 19341069.91323982 23737473.147394527 17605410.50771582 1.0610704820461871 0.9132612480794411 0.8630965517747409 0.874272328976887 0.8790165186628083 0.9718493188959727 1.0823637298975934 1.0985867046248836 1.3483055755497007 1.0 24.069515531318356 2.1160018895647887 1.7162690422666558 1.1643358025198742 0.9124432157407802 0.534324670161642 0.09607353755622208 0.2682308336732573 1.5179371377758266 0.05399507634559849 0.029763502169645885 130.61765711418505 -2.1160018895647887 -0.251892586779094 IES(ph)S(ph)IQSLQDLS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 IESSIQSLQDLSK 13 0 A0A087X043;O43424-2;O43424 A0A087X043 GRID2 Glutamate receptor ionotropic, delta-2 3 IES(0.982)S(0.514)IQS(0.514)LQDLS(0.991)K 55.589 0.060674 958330000.0 655900.0 711590.0 657830.0 496480.0 497650.0 599390.0 560510.0 533430.0 509640.0 616380.0 True False 652368.7072773414 735274.8429847622 750446.746039138 559334.3170947586 561022.7776973564 557955.5801122924 533395.9899438663 573237.2553026557 384046.0508261245 577042.1006905327 1.1305391868230534 1.274213514239041 1.3005060551753433 0.969312839436527 0.972238900811559 0.9669235216019769 0.9243623460152454 0.9934062949942062 0.6655425147775971 1.0 19.138317055424853 3.6696613696482134 5.273412426788862 0.9315644431684388 1.238616422378935 0.6662349535524121 0.09991244076350704 0.12179096122658677 6.495606887642243 0.026045195139758948 0.04125257618542086 4673.7057855842695 -3.6696613696482134 0.3070519792104963 IESGAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 IESGAFR 7 0 O94933 O94933 SLITRK3 SLIT and NTRK-like protein 3 0 92.677 0.036046 291160000.0 296070.0 385910.0 385640.0 324100.0 276960.0 316960.0 380050.0 299000.0 437860.0 334790.0 False True 294475.99201646965 398754.7810624789 439934.7599570305 365131.0267692782 312229.21432946774 295049.30124358425 361665.5295680121 321312.89829123573 329955.27002340247 313423.41557186074 0.9395468793522643 1.2722558725707387 1.4036435636257165 1.1649768607845514 0.9961898148540878 0.9413760637674382 1.1539199421591735 1.025171963316717 1.0527460732995277 1.0 18.257753440678314 3.3761370229752585 5.1995814049634035 1.0346096826084175 1.2226844766333977 0.3191287585954764 0.11908038311525021 0.23521165556200738 10.039223868919814 0.03356796081203578 0.045848281700192596 2377.590314829716 -3.3761370229752585 0.18807479402498029 IESLIDRDYMER ddPTM_BT-474_Trastuzumab_2h_R1 2 IESLIDRDYMER 12 1 Q13619;A0A0A0MR50;Q13619-2;A0A669KAX4;Q13620-1;K4DI93;Q13620;Q13620-3 Q13619;A0A669KAX4 CUL4A;CUL4B Cullin-4A;Cullin-4B 0 ; 158.25 5.663399999999999e-05 541330000.0 954910.0 1268890.0 1611290.0 1057610.0 679210.0 851170.0 1216720.0 758560.0 1847720.0 1008600.0 False True 949768.8706604758 1311124.2365897978 1838145.6264162506 1191503.3175608031 765703.3675069242 792330.6213386601 1157862.6052782296 815167.5990896311 1392374.1641795116 944230.2844940969 1.0058657154481614 1.3885640591291526 1.9467132717535096 1.2618778884000645 0.8109286262907522 0.8391285837259265 1.2262502318474071 0.8633143974262428 1.4746129064537714 1.0 19.84877922997857 3.474546426549949 24.554448899591524 1.023012459708802 1.4683820235415583 0.30043505345953914 0.2826955001195438 70.31352778372126 670526.438306907 0.0775856218273327 0.10570657910291835 2982.266338383654 -3.474546426549949 0.4453695638327564 IESS(ph)IQS(ph)LQDLS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 IESSIQSLQDLSK 13 0 A0A087X043;O43424-2;O43424 A0A087X043 GRID2 Glutamate receptor ionotropic, delta-2 3 IES(0.638)S(0.684)IQS(0.684)LQDLS(0.995)K 69.737 0.022126 9907200000.0 1097000.0 1133500.0 1090400.0 909430.0 886030.0 959630.0 930500.0 931450.0 854130.0 883350.0 True False 1091093.873888158 1171227.8622847807 1243918.8420732978 1024563.7447540419 998860.668588745 893293.0368260372 885488.1601448102 1000959.5288072628 643641.1062556271 826973.8467260156 1.3193813543291508 1.4162816235624194 1.5041815977590645 1.2389312537636874 1.2078503722254679 1.0801950271614742 1.0707571510882146 1.2103883729455962 0.7783089015496661 1.0 19.65748217892973 3.132333045715981 1.1098206852259258 1.0413071612640887 1.4179476856132953 0.6803002721555946 0.1132398826216901 0.30602967891154476 0.8092235080803184 0.047992992947161625 0.06760852984614077 1356.2290597558965 -3.132333045715981 0.3766405243492066 IET(ph)DEEESCDNAHGDANQPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-2;Q96T23;Q96T23-3 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR 408.41 4.458499999999998e-151 3941800000.0 529500.0 438180.0 400400.0 410240.0 407740.0 524910.0 496630.0 450880.0 677300.0 506620.0 True False 526649.2308329806 452764.55641459685 456772.8396608112 462176.3419371451 459663.27213567734 488624.2072052309 472606.1095891634 484526.9551222483 510388.49035502307 474287.0778607961 1.110401812354569 0.954621320185923 0.963072495504241 0.97446538923583 0.9691667633217473 1.0302288002639675 0.9964557999783286 1.0215900405881553 1.0761172171442182 1.0 18.855401036592163 1.5814716524211208 3.7880705111270334 1.0409607462165769 0.9956902642404043 0.0957146081648883 0.046075467154866705 0.35108244417782575 11.547217842165571 0.027527048894505197 0.011707977674380149 38.147989323935306 -1.5814716524211208 -0.04527048197617256 IETELR ddPTM_BT-474_Trastuzumab_2h_R1 6 IETELR 6 0 P63104;E7EX29;B0AZS6;E7ESK7;E9PD24;E7EVZ2 P63104;REV__P53355-4 YWHAZ 14-3-3 protein zeta/delta 0 ;;;;; 148.28 0.025091 8838320000.0 8210970.0 9884940.0 8594520.0 8552440.0 8669220.0 8999930.0 9109840.0 8450810.0 9826640.0 8936810.0 False True 8166763.049844533 10213954.252327582 9804553.711092982 9635178.027098566 9773193.780507328 8377786.022656394 8669162.236231687 9081452.354543682 7404996.242229867 8366455.134612031 0.9761318166948184 1.220822210600574 1.1718886378212363 1.1516440203256249 1.1681403441794145 1.0013543236486726 1.036181046422798 1.0854599957123665 0.8850816890890135 1.0 22.996185051956772 2.7363174284040945 24.837702500042912 1.0162307031036086 1.1450131107682393 0.43491311254217657 0.07644904410512846 181.88822014216302 2013943.0515253216 0.02363423694799316 0.023288042600791863 544.9007785286202 -2.7363174284040945 0.12878240766463067 IETIEVMEDR ddPTM_BT-474_Trastuzumab_2h_R1 9 IETIEVMEDR 10 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;;;;;; 268.72 9.6546e-18 14438380000.0 4661241.0 5595685.0 4898311.0 4915870.0 5168234.0 5119194.0 5278987.0 4766178.0 6086815.0 5110268.0 False True 4636145.396368565 5781933.992561986 5587950.611917546 5538218.637964495 5826377.965377105 4765316.168066477 5023622.231121296 5121854.404521496 4586801.002392302 4784126.32111945 0.9690683491993877 1.208566330499621 1.1680190356282245 1.1576238306075064 1.2178562132978497 0.9960682156384677 1.050060532253213 1.0705934711445955 0.9587541579209441 1.0 22.189824052599025 2.7276388687718773 24.976021766841413 1.0265557525598048 1.1498672496748914 0.450419469458228 0.0706183629275028 684.7312651392499 1565852.2775581728 0.022174894391517052 0.02108497679779112 534.1200349792548 -2.7276388687718773 0.1233114971150866 IETLDPALIRPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 IETLDPALIRPGR 13 1 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ;;; 192.15 2.7012e-06 4126420000.0 3722570.0 4452090.0 3970430.0 4055310.0 3737960.0 4152960.0 4327920.0 3664220.0 4637450.0 4170640.0 False True 3702528.096736408 4600275.124304764 4529432.032403778 4568711.830199697 4213967.049375285 3865875.650216291 4118561.975340059 3937662.702932146 3494612.586146316 3904466.184535458 0.9482802313415153 1.1782084686826635 1.1600643515222753 1.1701245738265418 1.0792684198586933 0.9901163097603422 1.054833562562938 1.0085021912926715 0.8950295433438604 1.0 21.896693887072473 2.8773353973147358 3.571751821063609 0.9970220986669281 1.1224545374324155 0.4033396795574502 0.07163632556724418 0.24999254212617247 5.800857202421889 0.022562958758561673 0.02429766781575965 753.9375905293582 -2.8773353973147358 0.12543243876548738 IETMLGDVAVAVHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IETMLGDVAVAVHPK 15 0 P26640;A0A140T936;P26640-2 P26640 VARS Valine--tRNA ligase 0 ; 131.53 5.2995e-05 379830000.0 930730.0 845840.0 765010.0 756950.0 752310.0 936570.0 969490.0 902910.0 1388410.0 955760.0 False True 925719.0530938241 873993.2730789231 872716.7584138787 852779.7923881687 848112.2192092792 871827.1203486368 922592.0648885448 970289.7290840797 1046254.9592408339 894762.5785326967 1.0345974175762829 0.9767879145238363 0.9753612626994633 0.953079412179514 0.9478628627943756 0.974366989931931 1.0311026489300492 1.084410269677615 1.1693101436546067 1.0 19.771145394564012 1.9514273631804673 2.4564094161739525 1.0946296597625476 0.9745322908413956 0.5418179909660669 0.044138706336891084 0.19839604360834295 2.1987760949077106 0.02327603122930391 0.012300736191560167 89.41849647920296 -1.9514273631804673 -0.12009736892115197 IETTHPPLPPAHPPPDR ddPTM_BT-474_Trastuzumab_2h_R1 3 IETTHPPLPPAHPPPDR 17 0 O75909;O75909-4 O75909 CCNK Cyclin-K 0 ;; 136.39 6.0489e-06 693020000.0 198172.0 218829.0 201979.0 232412.0 232555.0 238231.0 222478.0 199184.0 248353.0 225332.0 False True 197105.06397097907 226112.59098007611 230415.88756706027 261835.33537026064 262169.50078852323 221762.65170545306 211715.8891915065 214048.12151585813 187149.73090970158 210951.1188435689 0.934363681271312 1.0718719683480333 1.092271464736461 1.2412133047960983 1.2427973941343986 1.0512513653454545 1.0036253438812273 1.0146811388783665 0.8871710751554853 1.0 17.686549213787334 2.3768550337318386 3.4323345061644353 0.9815621400874608 1.1214798404581832 0.3511918529553977 0.08883356324987857 0.2958212765834951 6.882455267866725 0.03550760844580712 0.028963817080757546 238.1524390571321 -2.3768550337318386 0.13991770037072238 IETWHKPDLGTLENVHGLDPNTWK ddPTM_BT-474_Trastuzumab_2h_R1 1 IETWHKPDLGTLENVHGLDPNTWK 24 1 A0A0A0MSW4;P48739;P48739-3;P48739-2;B3KYB7;B3KYB6 A0A0A0MSW4 PITPNB Phosphatidylinositol transfer protein beta isoform 0 175.28 1.1936e-12 451380000.0 452800.0 400760.0 361110.0 334560.0 366770.0 464420.0 472240.0 387240.0 687030.0 540360.0 False True 450362.17511080956 414099.0543354644 411951.14917561226 376915.2616967901 413475.9854838931 432315.7385270872 449395.9470680117 416137.8151648771 517720.6622303426 505873.76217452897 0.8902659295372437 0.8185817990548364 0.8143358679145867 0.7450777049131725 0.8173501304090995 0.8545921351381258 0.8883559114358017 0.8226119761105687 1.0234186884982708 1.0 18.948417888196886 1.2393291315317556 24.999962723386126 1.0117094244714255 0.8303094827670789 0.7679915347491124 0.03963884834858963 9.303211541013797 302726.52727759193 0.0322692253884573 0.010205517073942844 17.35118464960866 -1.2393291315317556 -0.1813999417043466 IEVDEGFCS(ph)PKPSEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEVDEGFCSPKPSEIK 16 1 Q9UHV7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 IEVDEGFCS(1)PKPSEIK;IEVDEGFCS(1)PKPSEIK 192.98 2.7084e-10 843610000.0 2194130.0 1354030.0 1110380.0 1084700.0 963270.0 1811850.0 1552070.0 1604310.0 2658350.0 1531250.0 True False 2182317.0478707617 1399098.070021582 1266711.8524040235 1222022.9087832028 1085936.7247513966 1686601.074136132 1476990.4446168244 1724031.7587211134 2003235.2625650028 1433524.3140309183 1.522343936904926 0.9759848900556606 0.8836347176017992 0.8524605385638727 0.7575293380953252 1.1765416586437858 1.0303211673220134 1.2026526106650532 1.3974198016440458 1.0 20.451134943685904 1.9524467263935827 1.8104542890041453 1.221306580192757 0.9947102972460141 0.10188267478500956 0.21915951535691328 0.683188737611959 4.159829744779165 0.13929526855580412 0.0673479685000401 89.62862344521122 -1.9524467263935827 -0.22659628294674283 IEVEKPFAIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEVEKPFAIAK 11 1 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 141.73 0.0015110999999999998 0.0 690790.0 658270.0 576630.0 433250.0 508290.0 556600.0 586810.0 664700.0 819360.0 557630.0 False True 687070.8633939837 680180.1190173816 657814.4918421915 488099.40557787626 573017.718629135 518123.55209546664 558423.7584681094 714303.2892782092 617439.7068614961 522041.57598893763 1.316122881769369 1.3029232733597351 1.260080656595311 0.9349818635675473 1.097647668279351 0.9924948048705722 1.0696921167825582 1.3682881251843928 1.1827404851650742 1.0 18.9938051836927 3.9776258945927 23.72389264682271 1.1159999323122387 1.3025178885829607 0.38343493038065657 0.11499876314143496 483.13643195319725 512286.2072452258 0.033736841002240496 0.06152989790601473 9497.862862095775 -3.9776258945927 0.18651795627072199 IEVIEIMTDR ddPTM_BT-474_Trastuzumab_2h_R1 12 IEVIEIMTDR 10 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2;H0YH80;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;;;;;;;;;;; 229.48 3.727500000000001e-09 6216996000.0 4822443.0 5493005.0 5255832.0 5428108.0 5034959.0 5337980.0 5465495.0 4877883.0 6310256.0 5285221.0 False True 4796479.502711792 5675836.350833364 5995807.461089298 6115305.916243547 5676131.1841099225 4968978.006853326 5201108.126631546 5241895.398847986 4755177.961898308 4947913.670874651 0.9693943390616818 1.147117093865956 1.2117849784613177 1.2359362598099926 1.1471766812589808 1.004257215743813 1.0511719630937169 1.0594152904695622 0.9610470752327673 1.0 22.23838889831923 2.7462398481326336 22.97881008493197 1.0251650435054986 1.151614823304879 0.4361503277038742 0.07141831375723785 196.48895686528314 587959.4770270878 0.02291881538735158 0.023842598088617998 557.4935513022011 -2.7462398481326336 0.12644977979938044 IEVLEEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 IEVLEEELR 9 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 157.68 0.00015813 261630000.0 139160.0 142770.0 160560.0 129250.0 124320.0 147130.0 160950.0 118070.0 158610.0 152500.0 False True 138410.7780221296 147522.01314371257 183165.45238746205 145613.03674769888 140151.4150976293 136959.24940676597 153164.23361129194 126880.98294731168 119522.69076511172 142767.31943818132 0.9694850233709256 1.03330379616457 1.282964848736081 1.019932554037689 0.9816771488681993 0.9593179303619953 1.0728241884348926 0.8887256792844075 0.8371852272316803 1.0 17.123306247358858 2.619122305880704 0.9012603478734467 0.919075568307284 1.0842518807789623 0.27223919625852155 0.09669875466678368 0.7572842272159439 1.2812090251878017 0.06411603781749337 0.05266911949738029 416.0277556088289 -2.619122305880704 0.1651763124716783 IEVLPVDTGAGGYSGNS(ph)GSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IEVLPVDTGAGGYSGNSGSPK 21 0 Q92738;X6RAB3;Q92738-2 Q92738 USP6NL USP6 N-terminal-like protein 1 IEVLPVDTGAGGYS(0.006)GNS(0.497)GS(0.497)PK 123.19 1.3959e-05 0.0 69290.0 68209.0 55463.0 50555.0 56137.0 79471.0 75559.0 68270.0 93332.0 71583.0 True False 68916.95033884265 70479.29533178886 63271.70830696187 56955.25781647903 63285.71419993266 73977.35682461158 71903.92250658963 73364.65406803561 70331.57918472607 67014.51165471037 1.028388458516784 1.051701990979665 0.944149360260459 0.8498943946639312 0.944358358171881 1.103900558222031 1.0729604787254403 1.0947577212237867 1.0494977497874902 1.0 16.03218591728913 2.7430520150554862 24.955359483775702 1.0727602535060943 0.9611790763721824 0.43004151425224435 0.057408689388841416 362.08264190431834 2011826.3674636234 0.019428901997797697 0.019998682786843 553.4163874244903 -2.7430520150554862 -0.11158117713391191 IEVLPVDTGAGGYSGNSGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEVLPVDTGAGGYSGNSGSPK 21 0 Q92738;X6RAB3;Q92738-2 Q92738 USP6NL USP6 N-terminal-like protein 1 IEVLPVDTGAGGYSGNS(0.003)GS(0.997)PK;IEVLPVDTGAGGYS(0.001)GNS(0.216)GS(0.783)PK 279.97 6.279399999999998e-45 357970000.0 432190.0 362110.0 321760.0 306270.0 322200.0 501440.0 461190.0 404860.0 618840.0 413410.0 True False 429863.13706082315 374162.6124498826 367061.011211944 345043.7505974294 363230.26017097995 466776.6330627937 438880.47778311075 435072.7090374238 466335.17403115664 387025.8198618925 1.110683357545026 0.966763955395534 0.9484147888193278 0.8915264380049783 0.9385168676875257 1.206060704759594 1.1339824250994992 1.1241438857817716 1.204920059849147 1.0 18.56207029130814 2.7466029522186597 24.791059359085562 1.1399252553229287 0.9652456266901448 0.539891912071846 0.07486543878040644 392.5363829057978 1210020.89409784 0.022611024792753325 0.023607236975251123 557.9598543323352 -2.7466029522186597 -0.17467962863278386 IEVLQQHENEDIYK ddPTM_BT-474_Trastuzumab_2h_R1 4 IEVLQQHENEDIYK 14 0 O00505;H0Y4S9 O00505 KPNA3 Importin subunit alpha-4 0 ;;; 251.87 3.4415e-24 2462620000.0 3191220.0 2801860.0 2541690.0 2505400.0 2455950.0 3528300.0 3496610.0 2997640.0 4476130.0 3504180.0 False True 3174038.8260978744 2895118.2163398615 2899537.8592344825 2822583.38311555 2768700.6749438774 3284396.925724819 3327465.6159526506 3221339.1185074886 3373047.7385690645 3280540.232320563 0.967535406158591 0.8825126385637817 0.8838598687702818 0.8604020018736162 0.843977052214164 1.0011756275281305 1.014304163433135 0.9819538522253705 1.0281988635094605 1.0 21.64550198365293 2.724791152482836 24.530859257194468 1.002957700427168 0.8856464133317706 0.7696559047499822 0.032111338701398255 294.66173179670216 524950.7617795038 0.010536317313646716 0.009985801612452378 530.6292090209143 -2.724791152482836 -0.11731128709539729 IEVLYEDEGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEVLYEDEGFR 11 0 A0A087WW66;Q99460-2;Q99460;C9J9M4 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ; 192.26 3.4178e-06 79876000.0 140888.0 156893.0 135225.0 117800.0 140302.0 144238.0 135432.0 139957.0 156721.0 149714.0 False True 140129.47466212822 162115.08866117866 154263.5046032297 132713.4679216939 158168.6280648939 134267.1665597305 128880.63675951824 150401.30202724566 118099.20950380858 140159.12434339587 0.9997884570026636 1.1566502674773405 1.1006311956207537 0.9468771194413301 1.1284932665344996 0.9579623673359302 0.9195308358502237 1.0730753544004457 0.8426080717689164 1.0 17.096706141151017 2.951093004443853 0.9293591221100034 0.965797206157248 1.0824090951436387 0.25415369698004997 0.08228267980243618 0.8266090488508541 1.5633014426447218 0.042307941387423637 0.04995051343161973 893.4968061648905 -2.951093004443853 0.11661188898639074 IEVPLYSLLEQTHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEVPLYSLLEQTHLK 15 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ; 270.07 1.6161000000000002e-26 1016860000.0 1093950.0 933530.0 860590.0 1020960.0 796720.0 1174190.0 1312030.0 924770.0 1660590.0 1069120.0 False True 1088060.2947492707 964601.981719199 981753.5916176259 1150213.4313186123 898177.5694705868 1093021.0090459513 1248562.096458672 993781.0332869093 1251359.845265979 1000887.8462803168 1.0870951213893945 0.963746323131038 0.9808827185445391 1.1491931244776792 0.8973808332357709 1.0920514352412578 1.247454548577853 0.9928994911669483 1.250249815617716 1.0 19.932848892468854 2.4947178299535273 24.886077356180834 1.11983084597093 1.0159074346590447 0.2000328826751664 0.10227255104938428 1124.2169244450695 1589932.960258858 0.03145505075675589 0.029071994351389074 312.4048948814701 -2.4947178299535273 -0.10392341131188543 IEWLESHQDADIEDFK ddPTM_BT-474_Trastuzumab_2h_R1 5 IEWLESHQDADIEDFK 16 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;; 276.97 5.9922e-35 1638081000.0 2629242.0 2405862.0 2068316.0 1918208.0 2084795.0 2798897.0 2634802.0 2688204.0 3798272.0 2523266.0 False True 2615086.4532082463 2485939.6622957066 2359516.9146750467 2161052.9361217013 2350281.2857019203 2605415.8382848455 2507346.5613389197 2888811.4329033187 2862238.759837228 2362229.00360329 1.1070418868023606 1.052370307241047 0.9988518941541628 0.9148363400945805 0.9949421847402835 1.102948035228847 1.0614324680267115 1.2229176038803995 1.2116686212349583 1.0 21.1717174012684 2.262031361191993 1.8455912765177414 1.1607483009730184 1.0126879974187095 0.2984244256208669 0.07761192221089971 0.35227861111845943 2.4191358938197327 0.038954669263779704 0.02542367554860434 182.82322313404995 -2.262031361191993 -0.14806030355430888 IEWLESHQDADIEDFKAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEWLESHQDADIEDFKAK 18 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 208.34 3.8626e-16 2069500000.0 2227100.0 2574000.0 2526800.0 2446500.0 2456600.0 3032900.0 3439900.0 2852100.0 5701700.0 3122600.0 False True 2215109.5410540705 2659674.033984141 2882551.4766606786 2756226.649154705 2769433.4485910255 2823242.7616786547 3273498.8953058925 3064938.1846703496 4296592.433865691 2923312.9946076395 0.757739436433962 0.9098150074556476 0.986056396279786 0.9428434978529008 0.9473612485900548 0.9657682112337698 1.1197907652530563 1.0484468102881739 1.469768184861221 1.0 21.479172873867974 2.120191659816709 1.1540662031273823 1.199748063343905 0.9072194312064913 0.47101930160926087 0.12793810053917024 0.4311018464094423 1.0776065428605277 0.08769142523899691 0.04477694927835645 131.88386308299664 -2.120191659816709 -0.29252863213741376 IEYAKPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 IEYAKPTR 8 1 A0A3B3ITJ4;M0R1W6;B4DVF8;P14866;M0QXS5;P14866-2 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;; 123.86 0.0012125 8649780000.0 3486205.0 4219200.0 3349000.0 3412780.0 3376020.0 4278560.0 3698710.0 3895520.0 5355920.0 4073440.0 False True 3467435.659633784 4359633.521439738 3820510.0899701645 3844837.598079787 3805936.135761737 3982793.2178468904 3519789.2668556743 4186223.4834497496 4036025.281651074 3813469.571752564 0.9092600830797366 1.1432196951911622 1.0018462237826025 1.0082255871554804 0.9980245191815271 1.0444014677207742 0.9229886854028515 1.0977466594878003 1.0583604263023474 1.0 21.862672757647108 1.6472084123432376 24.99999981139623 1.0585417541778526 1.0107096026002071 0.09512481659083027 0.0647233159058359 1.251482342413222 786.8921727753793 0.028075770850303945 0.015568699362753602 44.38215771092465 -1.6472084123432376 -0.04783215157764542 IEYARPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 IEYARPTR 8 1 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;Q8WVV9-3;Q8WVV9-2;H7BXH8 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 ; 107.69 0.003606 479580000.0 241245.0 316500.0 266690.0 291520.0 285350.0 289190.0 275930.0 257043.0 353550.0 271550.0 False True 239946.1637248391 327034.51117170986 304237.6338889652 328426.402109781 321687.6310980421 269198.975980036 262582.21174503723 276224.8538979067 266422.3398272822 254219.44651434867 0.9438544809013895 1.28642602151701 1.1967520111479488 1.2919011767702984 1.2653934838926078 1.0589236176503196 1.0328958517743314 1.0865606769477252 1.0480014156283073 1.0 17.95571486794545 2.7202304645501534 21.12674671230129 1.0524937551439282 1.2071144520887223 0.3846400682746316 0.09521056193927943 112.93306495111825 130161.72374889647 0.029890148265794697 0.02827281048675871 525.08603070773 -2.7202304645501534 0.15462069694479408 IEYDCELVPR ddPTM_BT-474_Trastuzumab_2h_R1 5 IEYDCELVPR 10 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;;; 156.92 2.3479e-05 1914860000.0 485047.0 660787.0 536210.0 592505.0 579626.0 547717.0 562618.0 570170.0 688748.0 626367.0 False True 482435.56084578735 682780.8958408241 611703.7071791291 667516.0722490932 653437.9353875372 509854.61297713325 535402.0179305243 612718.9806645948 519015.28415036417 586391.7218002324 0.8227189145247517 1.1643767646389607 1.0431656594693877 1.1383449790181344 1.114336903293027 0.8694778490594496 0.9130449800464971 1.0448970507010864 0.8850999508604565 1.0 19.161505211261108 2.749015445371841 24.960453990839895 0.9510760866091699 1.0663731702210315 0.23948134800425203 0.10032176731080193 1004.0298078526481 2397077.067468285 0.029936921616577822 0.03145435646622148 561.0679296562588 -2.749015445371841 0.11529708361186164 IEYEPFR ddPTM_BT-474_Trastuzumab_2h_R1 3 IEYEPFR 7 0 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ;; 129.39 0.008526100000000002 299523000.0 389367.0 522976.0 530667.0 472245.0 355889.0 385723.0 465002.0 351761.0 630000.0 430699.0 False True 387270.6913347409 540382.9400143326 605380.3009597484 532031.1685796289 401209.3546306322 359058.8769042757 442508.07677985716 378011.19202616543 474744.9415674947 403211.42108003504 0.9604655798127057 1.3401975037484612 1.5013967097910754 1.319484371634463 0.9950346980647519 0.8904977838735492 1.0974591830622327 0.9375012022567002 1.1774094600193894 1.0 18.621176978607394 3.237828990478278 24.997394272436562 1.0079157241577117 1.3004448019186807 0.4362650760007095 0.1461609585614826 16.86994167357331 576402.4827799475 0.04161341358853823 0.05261303442615256 1729.135353935124 -3.237828990478278 0.29252907776096904 IEYQFFEDR ddPTM_BT-474_Trastuzumab_2h_R1 8 IEYQFFEDR 9 0 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ;;;;;;; 174.02 0.00012793 1912761000.0 1081843.0 1475266.0 1333848.0 1240507.0 1186960.0 1168321.0 1329231.0 1116346.0 1542248.0 1231365.0 False True 1076018.477492058 1524369.336992872 1521642.2043853486 1397555.0590079527 1338112.3203368909 1087557.7192018116 1264931.018374471 1199653.407210126 1162181.6454644229 1152778.2314753858 0.9334132516667263 1.3223439646686461 1.319978260205236 1.2123364415194489 1.160771676460532 0.9434231923428137 1.0972891262489803 1.0406627870433907 1.0081571751897171 1.0 20.136683567028733 2.925624114401277 5.119100720603944 1.0291206687876282 1.2121058132233673 0.38883954167803614 0.10725425179653525 0.22279821133512678 10.651662752731758 0.03250827576981788 0.0350274840549829 842.6051600808178 -2.925624114401277 0.1829851444357391 IEYVHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IEYVHTK 7 0 P48729-2;A0A5F9W493;U3KPX3;A0A590UJ43;P48729;E7ETM0;P48729-3;D6REM4;A0A590UK94;Q8N752 P48729-2 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like 0 ; 77.058 0.039078 836700000.0 934940.0 990010.0 894280.0 904490.0 866360.0 982210.0 1044070.0 971040.0 1209890.0 1054010.0 False True 929906.386921599 1022961.8843763177 1020186.8507788946 1018998.3412605515 976685.8106819676 914312.1345736397 993564.345365279 1043503.9356412081 911728.8211953917 986742.1794166398 0.9424005645237117 1.0367063511778638 1.0338940323621588 1.0326895540869465 0.9898085143774663 0.9265967885493447 1.0069138282430294 1.0575244044580376 0.9239787658964818 1.0 19.91231365428963 3.206758098852251 23.841381363191957 0.9906929524269623 1.0148337094557212 0.06970825685908111 0.044478269879811745 383.3633940953894 287394.66082902893 0.013532280295132431 0.016175715611938122 1609.7487586205605 -3.206758098852251 0.02414075702875884 IFAPNHVVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFAPNHVVAK 10 0 Q02543;M0R3D6;M0R1A7;M0R117 Q02543 RPL18A 60S ribosomal protein L18a 0 ; 131.44 0.00025009 4789600000.0 9963700.0 10326600.0 9874200.0 9320500.0 9391900.0 10539300.0 10910900.0 10093300.0 14565700.0 11210400.0 False True 9910056.546271143 10670314.638438469 11264401.53191502 10500474.3443476 10587902.794847371 9810742.997843608 10383098.083314352 10846513.29873889 10976178.40538043 10494942.674293688 0.9442697167412678 1.0167101402634944 1.0733171091544926 1.0005270795873389 1.0088576110836107 0.934806725707425 0.9893430012482786 1.0334990514342055 1.0458540600002972 1.0 23.323190950542596 1.7138533028344953 7.462194928375511 1.0294302887201598 0.9976269623984697 0.12060537332848853 0.03775007592440101 0.275595766234207 37.57957688170348 0.01960109178351987 0.010279566751546681 51.74320228393906 -1.7138533028344953 -0.03180332632169014 IFASIAPSIYGHEDIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFASIAPSIYGHEDIKR 17 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 0 153.95 1.0125e-07 287270000.0 560470.0 730250.0 703740.0 669070.0 632760.0 824480.0 821950.0 737060.0 1015800.0 846560.0 False True 557452.4917940705 754555.9298045525 802820.4749822654 753774.193398708 713338.2353376446 767485.6382171584 782189.138346078 792063.1599148441 765469.7010226368 792531.8160235201 0.703381846032446 0.952082824372264 1.0129820137825734 0.951096445794093 0.9000752031846185 0.9683972588860478 0.9869498265327241 0.9994086595652053 0.9658535916745075 1.0 19.596109327541225 4.7353256599154205 4.6026809009687035 0.9723675477970091 0.6872133766882522 0.8765726168147607 0.030185990519501334 0.06179984885855554 3.490169115420433 0.0077600148459238795 0.05679246337619058 54365.78457750714 -4.7353256599154205 -0.28515417110875685 IFCCHGGLSPDLQSMEQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFCCHGGLSPDLQSMEQIR 19 0 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;F8W1A0;P62140;E7ETD8;P62136;P62136-2;P62136-3 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 ; 232.95 4.234e-24 2748700000.0 882760.0 988120.0 1000660.0 1156910.0 947630.0 974330.0 972800.0 872640.0 1098150.0 980700.0 False True 878007.3182438553 1021008.9768688475 1141544.2301073584 1303374.6873793448 1068305.0634569386 906976.8604261156 925741.9475431164 937760.8279761348 827525.6469561037 918110.886380489 0.95631947215577 1.1120758854020547 1.24336204595909 1.4196266559017714 1.1635904543824407 0.9878728962704412 1.0083116988109266 1.021402579892188 0.9013351864484435 1.0 19.80830888250967 2.7706785390988986 5.192534909776799 0.989621700524294 1.193887357195258 0.42821168105817886 0.1123381498453615 0.2019490776902033 15.124452304564192 0.037911463864741674 0.03928755867892133 589.7643802382055 -2.7706785390988986 0.20426565667096397 IFCCHGGLSPDLQSMEQIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFCCHGGLSPDLQSMEQIRR 20 1 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;F8W1A0;P62140;E7ETD8;P62136;P62136-2;P62136-3 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 123.4 1.867e-05 355930000.0 79538.0 131690.0 106380.0 131140.0 107560.0 93980.0 116640.0 97461.0 130710.0 116750.0 False True 79109.77624550251 136073.222041714 121357.379328464 147742.3105539128 121257.12844193225 87483.3838051239 110997.6775919296 104734.03471693027 98498.27192426549 109298.9150452963 0.7237928776577276 1.2449640692711519 1.1103255625014243 1.3517271465383218 1.1094083449198024 0.8004048692420096 1.0155423550721367 0.9582348980639541 0.9011825221087076 1.0 16.737919554618273 2.889891596238 8.559091941629575 0.9417877753856027 1.1315330508442474 0.21830332545992948 0.16087708385871652 0.44968624727542306 31.85588485198735 0.04772270792687905 0.05067532773996364 776.0533826302038 -2.889891596238 0.18974527545864472 IFCGDLGNEVNDDILAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFCGDLGNEVNDDILAR 17 0 K7EP90;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3;Q9BTD8;K7EQ03 K7EP90 RBM42 RNA-binding protein 42 0 ; 198.16 3.36e-11 75527000.0 44723.0 56230.0 56671.0 54407.0 47200.0 54066.0 57027.0 49801.0 64380.0 52703.0 False True 44482.216337192425 58101.58155824718 64649.78420683764 61294.920621524594 53210.640223681716 50328.54467767428 54268.38614570451 53517.40350435398 48514.4116478021 49339.4494186916 0.9015547773895695 1.1775887700975471 1.3103061539706993 1.2423105921061175 1.0784603567854887 1.0200467429336164 1.0998984947153798 1.0846777605929185 0.9832783344644105 1.0 15.590453996173396 3.0720660012648513 7.435772991750231 1.0511801456487098 1.169846779530756 0.22088339078262786 0.10427491564819218 0.36765221443203255 32.17742123929522 0.03130329331938446 0.03747229549400472 1180.5000267745738 -3.0720660012648513 0.11866663388204635 IFCSEDEQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFCSEDEQSR 10 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ; 136.99 0.00023986 574230000.0 215520.0 299520.0 308930.0 359920.0 308710.0 259180.0 274240.0 227599.0 195407.0 256650.0 False True 214359.66426652283 309489.34213633684 352424.65873230353 405485.8350965707 348022.3886324746 241263.49664409447 260973.9635014646 244583.59310430437 147251.56316965015 240270.37727088007 0.8921601851270013 1.2880878019657809 1.4667836407273007 1.687623084053459 1.4484614898661237 1.0041333408824458 1.0861678683229576 1.017951508972584 0.6128577515139921 1.0 17.874299265231816 2.6835391156275965 5.5663389257326825 0.9594943885533522 1.3771950600705858 0.4603828005227443 0.22254789312049847 0.2101087074752699 14.507692186039183 0.07692627503243069 0.07304123559735004 482.54643964215995 -2.6835391156275965 0.41770067151723356 IFDEVMGCFSDS(ph)PPQS(ph)PTFPEAGHTSLYDEDKVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR 35 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 2 IFDEVMGCFSDS(1)PPQS(0.999)PT(0.001)FPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQS(1)PTFPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQS(0.992)PT(0.007)FPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQS(0.995)PT(0.005)FPEAGHTSLYDEDKVPR 328.89 1.860499999999999e-117 3887270000.0 1056450.0 1611270.0 1443980.0 1441870.0 1359360.0 1603530.0 1502520.0 1239780.0 1290200.0 1621670.0 True False 1050762.1905826298 1664900.1479167158 1647279.8327008418 1624410.5941617384 1532466.4384420337 1492681.7454035985 1429837.3674162058 1332298.679075279 972247.4977942582 1518173.6322184613 0.6921225400596522 1.0966467290594737 1.0850404708279129 1.0699768193102104 1.009414474023427 0.9832088462914402 0.9418141226223431 0.8775667359789613 0.6404059964956329 1.0 20.53390536931031 1.7444670098849824 2.3977379550650357 0.8100320163882764 1.0006675286531421 0.19237303642946513 0.1356543057414531 0.36479098150109657 4.317608214585002 0.0832284443904544 0.03666021656205234 55.52224394069407 -1.7444670098849824 0.19063551226486575 IFDEVMGCFSDS(ph)PPQSPTFPEAGHTSLYDEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDK 32 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 IFDEVMGCFSDS(0.999)PPQS(0.001)PTFPEAGHTSLYDEDK 121.85 2.8324000000000004e-07 19124000.0 22042.0 22811.0 16700.0 15046.0 15277.0 15235.0 15455.0 13420.0 13259.0 16571.0 True False 21923.32832109642 23570.25034545932 19051.21484099785 16950.822057298858 17222.43539612682 14181.840309332445 14707.382606166619 14421.468545379219 9991.497111497487 15513.424592853129 1.4131843159373247 1.5193454033558706 1.2280470199838753 1.092655071473253 1.110163348720631 0.9141656778907392 0.9480422918961526 0.9296121858240789 0.6440548991420285 1.0 13.921229576417455 3.75040883251928 0.6605917890918319 0.86146051553149 1.5785478718451211 0.8175633020802985 0.10383667214563583 0.46276159430127356 0.33686337708730035 0.05382712400185187 0.21257811524077178 5628.70946625813 -3.75040883251928 0.7170873563136312 IFDEVMGCFSDS(ph)PPQSPTFPEAGHTSLYDEDKVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR 35 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 IFDEVMGCFS(0.001)DS(0.999)PPQSPTFPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQSPTFPEAGHTSLYDEDKVPR 144.97 1.3651e-10 250350000.0 26388.0 39194.0 42963.0 53504.0 56250.0 74399.0 64693.0 75027.0 78778.0 91272.0 True False 26245.929939982427 40498.5485967267 49011.81695890962 60277.60091411132 63413.104080129175 69255.97224640784 61563.55243874066 80625.8957193864 59364.21747111771 85446.94281810935 0.3071605498613573 0.4739613526365225 0.5735935697926715 0.7054389417117481 0.7421342647111021 0.8105143374624042 0.7204886495446748 0.9435784717425701 0.6947494610484325 1.0 16.38274125459827 4.586700360300657 0.48033877469364983 0.8711029759216706 3.322861733595581e-14 0.8301740956065604 0.08087133805280149 1.499962559906097 0.2981780176118648 0.049831157464513845 0.7325333256346088 38610.04966795254 -4.586700360300657 -0.8711029759216374 down IFDFDDDGTLNREDLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFDFDDDGTLNREDLSR 17 1 Q99828;Q99828-2 Q99828 CIB1 Calcium and integrin-binding protein 1 0 81.317 0.008712799999999998 61872000.0 21906.0 33058.0 31928.0 32265.0 31739.0 30379.0 32213.0 26106.0 37113.0 30439.0 False True 21788.06052998541 34158.31554601699 36423.18487684905 36349.74569179502 35780.77351820834 28278.971234473913 30654.734124389837 28054.16228358193 27966.998438721344 28496.356959860997 0.7645910865264404 1.1986906113694193 1.2781698702101998 1.2755927272737366 1.2556262391227035 0.9923714555620816 1.0757422139106783 0.9844824137730332 0.9814236422611743 1.0 14.79848987314667 2.722351264460407 24.018986865260718 1.009826567728087 1.1705813791757278 0.20883583470035694 0.1420030709824352 749.8630240878456 1111143.0859601267 0.0468370319383048 0.04429416957211445 527.6564660331098 -2.722351264460407 0.1607548114476407 IFDLGR ddPTM_BT-474_Trastuzumab_2h_R1 7 IFDLGR 6 0 P27635;X1WI28;Q96L21;A6QRI9;B8A6G2 P27635 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 ;;;;;; 159.65 0.021057 6922057000.0 6960650.0 8465040.0 7841300.0 7800610.0 7083390.0 7687450.0 8084080.0 7127780.0 9194090.0 7868920.0 False True 6923174.633800912 8746793.739175262 8945286.882198578 8788166.426185427 7985417.729958144 7156034.675810807 7693022.166215415 7659691.137733454 6928329.713994117 7366718.788678645 0.9397908122189511 1.1873391655206862 1.2142837454235276 1.1929553276407534 1.0839856873904743 0.9714005490216863 1.044294262737196 1.039769720748002 0.9404905919093511 1.0 22.81259074069562 2.9730499293442705 5.0271472332991936 1.0094357040643773 1.1432363625672648 0.40096125903722013 0.0770443324632594 0.1964858188608708 13.342844360634233 0.023606918683569535 0.02622880770547645 939.8313535351407 -2.9730499293442705 0.13380065850288747 IFDLQDWTQEDERDKDAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 IFDLQDWTQEDERDKDAAK 19 2 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7-2;Q9P2R7;Q5T9Q5 A0A2R8YDQ9 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial 0 79.48899999999998 0.0048625 53911000.0 40217.0 33828.0 33837.0 29658.0 34081.0 71395.0 35421.0 34984.0 64591.0 36667.0 False True 40000.47614052878 34953.944530542154 38600.95548352363 33412.69975909676 38421.01333608679 66459.63169575257 33707.550908639765 37594.68372515248 48673.41352505726 34326.880667801954 1.1652814168474261 1.0182674292141078 1.1245110168058667 0.9733683663962313 1.1192689981914106 1.9360812984702862 0.9819578782833271 1.0951966212419548 1.4179387284295866 1.0 15.067051143061962 2.9803999638280305 24.81578750786552 1.277990072674803 1.0674811776237616 0.13761649097612594 0.2598255526014799 1496.5399709640265 1894785.6345695863 0.08000864192102436 0.0860179292935329 955.8724922709879 -2.9803999638280305 -0.21050889505104142 IFDSEEILAGYKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFDSEEILAGYKR 13 1 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 176.32 2.6874e-05 1241000000.0 1026200.0 1225200.0 1159100.0 1149800.0 1043400.0 1146700.0 1433500.0 1105400.0 1706100.0 1322900.0 False True 1020675.0532215378 1265980.0413509589 1322291.204922193 1295364.5621083493 1176270.8052836745 1067431.328041452 1364156.128498209 1187890.5611074655 1285654.5155687365 1238471.3894083288 0.8241410031354526 1.0222117783082354 1.067680058038247 1.0459382212512804 0.9497763253502609 0.8618942166693168 1.1014837647157316 0.9591586622561964 1.038097873365447 1.0 20.24012910982166 4.742332104110143 24.317257592846456 1.0033568793671954 0.8241409009086789 0.4122820275838637 0.06479914014923231 255.8120522783489 1649285.9912678332 0.015466357519419882 0.11496368970310995 55249.977323808074 -4.742332104110143 -0.17921597845851656 IFEDHENLVENLLNWTR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFEDHENLVENLLNWTR 17 0 C9K0J5;Q70E73;C9J164;Q70E73-5;Q70E73-2;Q70E73-8;Q70E73-7;Q70E73-4;Q70E73-3;Q70E73-9;Q70E73-6 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 0 187.35 4.7168e-10 50780000.0 46499.0 69568.0 76267.0 71231.0 69989.0 72848.0 71690.0 63555.0 86433.0 72968.0 False True 46248.654550524545 71883.528825256 87004.73067535226 80248.83729652106 78901.68429269621 67812.18922574667 68222.08081760496 68297.79682575092 65132.74529286232 68311.1197689523 0.6770296652572918 1.0522961571759708 1.2736539961521212 1.1747551140714063 1.1550342690848023 0.9926962031233985 0.9986965672404655 0.999804966698739 0.9534720776523625 1.0 16.059832820872263 2.648280922099847 10.673516339535086 0.9904877331262993 1.083251417863994 0.05911732915514478 0.14743509996922508 1.6416735155189417 187.09949083601055 0.049902248186394466 0.04703533523567628 444.9189689274826 -2.648280922099847 0.0927636847376947 IFEQKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFEQKDR 7 1 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ; 81.958 0.023521 2548500000.0 1470770.0 1545360.0 1391900.0 1278790.0 1429270.0 1339880.0 1342020.0 1267890.0 1506310.0 1480730.0 False True 1462851.5377379106 1596796.373410151 1587867.421388319 1440684.6828827064 1611279.0625530013 1247257.2493382562 1277101.3655857472 1362506.3900149653 1135100.0840198947 1386228.543683266 1.0552744310480393 1.1518997936425388 1.1454586104317908 1.0392836660647227 1.1623473415658914 0.8997486417529988 0.9212776431456509 0.9828872708065367 0.818840507355221 1.0 20.402733699567744 2.734196144321772 24.97013390672293 0.9281887074756727 1.111079646282322 0.7141324762916341 0.058913403295098025 194.316675342329 1111726.0168751338 0.017944620370499344 0.0174524169544688 542.2457344234879 -2.734196144321772 0.1828909388066493 IFGPIWNR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFGPIWNR 8 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 170.96 0.00067975 2781000000.0 714470.0 815360.0 790080.0 753760.0 723990.0 742140.0 803540.0 734420.0 955870.0 779360.0 False True 710623.372905079 842498.7647044722 901316.3965015325 849185.9387152452 816185.8350750698 690837.6086096463 764669.7003791091 789226.1497091949 720308.6465017801 729620.5775563354 0.9739628990250216 1.1547080641916534 1.2353220622151933 1.1638733402494779 1.118644210678187 0.9468450176164411 1.0480374648151525 1.0816939296757393 0.9872372965607097 1.0 19.476786892974335 2.918392657716817 7.628245929786623 1.0261787923473373 1.1410386313963221 0.39860146042014843 0.07040986986590846 0.31779011103363647 26.49607183121294 0.02222702965220937 0.023646128259036392 828.6910677452667 -2.918392657716817 0.11485983904898478 IFHELTQTDK ddPTM_BT-474_Trastuzumab_2h_R1 4 IFHELTQTDK 10 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;;; 188.99 1.0606e-06 2088008000.0 3884660.0 3832790.0 3585690.0 3390980.0 3162650.0 4212060.0 4117240.0 3691970.0 5545800.0 4159060.0 False True 3863745.4221863034 3960362.0981795187 4090523.984623809 3820277.7203149893 3565394.731004808 3920890.2063227315 3918073.3718158123 3967483.5488437936 4179111.8999127215 3893625.2300495883 0.9923259671648202 1.0171400338211494 1.0505695188778383 0.9811621547013489 0.9157005413588303 1.0070024654819683 1.006279017707596 1.018969036419888 1.073321558443748 1.0 21.892682597509538 1.6646609314716547 2.594915391032843 1.0381635635193762 0.994704167941382 0.1734677140850588 0.0361435816600077 0.4271612050486831 6.505400272590519 0.0253091443222029 0.010506568467486438 46.20201656352247 -1.6646609314716547 -0.043459395577994275 IFHLWR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFHLWR 6 0 E9PDF6;O43795;O43795-2 E9PDF6 MYO1B Unconventional myosin-Ib 0 96.337 0.042323 188980000.0 65530.0 79602.0 78893.0 70496.0 49488.0 73383.0 74223.0 58780.0 119420.0 70577.0 False True 65177.19376106744 82251.50444957489 90000.44864975111 79420.78637188236 55790.00346164327 68310.2059350012 70632.5499306053 63166.462078792065 89990.54114601639 66072.71543599032 0.9864464224148554 1.2448633888712837 1.3621424222671976 1.202020922673041 0.84437279584326 1.0338640615002195 1.0690123671250114 0.9560143194052049 1.3619924737798477 1.0 16.0117670169169 3.4338207996276466 24.96045027446393 1.0362323387849754 1.2157823122201692 0.19834418491960715 0.15053887968410715 186.67798353877845 107609.52211552995 0.04096589824267622 0.055468135790146894 2715.3186317310087 -3.4338207996276466 0.17954997343519374 IFHTVTTTDDPVIR ddPTM_BT-474_Trastuzumab_2h_R1 4 IFHTVTTTDDPVIR 14 0 O15371-2;O15371;O15371-3;B0QYA5;B0QYA4 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ;;; 210.41 5.2836e-09 1539820000.0 608738.0 710778.0 684270.0 695212.0 626401.0 747434.0 688403.0 639018.0 813962.0 736121.0 False True 605460.6222451506 734435.8160556257 780609.2682185392 783225.767918308 706169.4543803907 695765.6468503827 655102.3169351607 686704.7680276555 613371.9716320018 689141.1275551042 0.8785727596801101 1.0657262884036762 1.1327277345758486 1.136524489108627 1.0247094914879027 1.009612717962111 0.9506069087173704 0.9964646435540827 0.8900527730917586 1.0 19.39443993367214 2.5937008032037947 2.194897042404416 0.9627141487223754 1.059843871658517 0.24016359627866513 0.07284769634406836 0.4475045266261865 4.273912371863677 0.028371041194767053 0.025528680582984204 392.3745252193266 -2.5937008032037947 0.09712972293614164 IFIEWMK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFIEWMK 7 0 Q9NR19;Q9NR19-2;F8WCJ4;C9IYL0;B4DEH9;C9JY31;C9JXD9;C9J7L5;F8WDJ9 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ; 123.96 0.009755 162123000.0 298300.0 365220.0 327330.0 296690.0 298630.0 357840.0 354590.0 271940.0 437840.0 332890.0 False True 296693.98594424553 377376.12691984774 373415.2187966362 334250.9235796888 336658.76038131537 333103.3630647534 337437.1270346565 292233.5436833401 329940.19875541574 311644.6751985322 0.9520264889982081 1.2109179362023161 1.1982082432781929 1.0725385356472252 1.0802647603937017 1.0688562634755465 1.0827623697394906 0.9377138996428342 1.0587063569920727 1.0 18.24954253732102 2.324508253099076 1.1014383260427278 0.9945857439111562 1.118521602148062 0.2326219053088765 0.07477976545782207 0.6280991813356296 1.4892030362887654 0.048569989206379796 0.02968003916457405 211.10973135868394 -2.324508253099076 0.12393585823690578 IFPHLYLGSEWNAANLEELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFPHLYLGSEWNAANLEELQR 21 0 Q8TE77;Q8TE77-2;Q8TE77-3;A0A087WWG1;E9PIT5 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 216.96 5.9905e-25 29094000.0 18346.0 22744.0 15891.0 23302.0 19554.0 16626.0 20463.0 16497.0 18961.0 16134.0 False True 18247.227174432228 23501.02029096166 18128.314672951907 26252.030810792105 22044.085994361703 15476.683753394222 19473.12651374877 17728.089910068622 14288.315614382973 15104.314306987655 1.2080804731394248 1.5559144104998839 1.2002077224098329 1.7380484990733556 1.4594562551021284 1.0246531844371312 1.2892426705355295 1.173710341942973 0.9459757870486594 1.0 13.882673070840552 2.7475397543227316 24.379616454485348 1.1204936558719647 1.4432940626914885 0.4937736279766902 0.17312134786257388 415.827847979181 1129030.3527835747 0.051772799184662543 0.05415789058097076 559.1647098855295 -2.7475397543227316 0.3228004068195238 IFPKPNLDITEEIKEDS(ph)DEMPSECISR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFPKPNLDITEEIKEDSDEMPSECISR 27 2 Q96LT9-2;Q96LT9;H0YEB8 Q96LT9-2 RNPC3 RNA-binding protein 40 1 IFPKPNLDITEEIKEDS(0.942)DEMPS(0.055)ECIS(0.004)R 131.23 2.2592e-05 118260000.0 125280.0 98910.0 87958.0 75268.0 97296.0 126670.0 107450.0 117190.0 210990.0 120700.0 True False 124605.50639991665 102202.15955764249 100341.72185535854 84796.92108259804 109686.06888142668 117913.60104910664 102252.2330011389 125935.31287876214 158994.3416211519 112996.82266353117 1.102734603175104 0.9044693217787921 0.8880048083665545 0.7504363316046193 0.9707004701188556 1.0435125366331413 0.9049124620575725 1.1145031330107193 1.4070691358693048 1.0 16.78592268077627 1.5844403267172045 4.173922746152093 1.219611064264147 0.9334530869584352 0.4221043412788009 0.1281935961058524 0.14250022656727745 5.601157574047987 0.07399618243641375 0.03242262604441908 38.40964796166581 -1.5844403267172045 -0.2861579773057117 IFPLLGLHEEGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFPLLGLHEEGLR 13 0 A0A6I8PIQ6;A0A0A0MS45;J3KNI1;Q9H9E3;Q9H9E3-2;Q9H9E3-3 A0A6I8PIQ6 COG4 Conserved oligomeric Golgi complex subunit 4 0 119.74 0.00032460000000000003 149800000.0 57616.0 63711.0 68774.0 57727.0 45901.0 60809.0 59086.0 50972.0 82241.0 66658.0 False True 57305.80185773935 65831.58212088724 78456.78140567584 65035.23228111733 51746.220273457955 56605.41695898889 56227.78444956071 54775.78947057145 61973.80752294026 62403.829371215055 0.9183058545470085 1.0549285642277155 1.2572430601809432 1.0421673306977546 0.8292154631351337 0.9070824263406375 0.9010309946699656 0.8777632722622278 0.9931090471112475 1.0 15.929346941415034 3.3912506166466883 6.5155005166295545 0.9088330534402639 1.0865898431930558 0.3993076982369054 0.09019371437500341 0.18946834541749455 11.741606396433049 0.025221421270205643 0.034281695936583284 2461.787808756747 -3.3912506166466883 0.17775678975279197 IFPMGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 IFPMGDR 7 0 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 PSMB3 Proteasome subunit beta type-3 0 ;; 116.87 0.012465 555920000.0 328610.0 452990.0 452320.0 371930.0 304389.0 361310.0 400540.0 315564.0 470700.0 391350.0 False True 326840.8002720029 468067.49831176293 516002.7243640804 419016.2998651582 343151.1348950479 336333.4901322552 381164.3499886104 339112.98808152345 354702.2920568573 366373.70794840786 0.8920967667200291 1.277568472183259 1.4084054427746848 1.1436855068327212 0.9366150666667649 0.9180066222972996 1.0403703697053648 0.9255931327072104 0.9681434130278964 1.0 18.482956449559854 3.3409366032823162 4.7030601450200225 0.9620836771466068 1.2116799643447285 0.4141389962874654 0.12553514966202506 0.19030064440557964 7.103023278320564 0.035358665145226655 0.048170958965836314 2192.484861080251 -3.3409366032823162 0.24959628719812166 IFQGNVHNFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFQGNVHNFEK 11 0 Q96DI7;Q96DI7-2;Q9NSS8 Q96DI7 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein 0 ; 155.48 3.1512e-05 2271600000.0 2361100.0 2442190.0 2407820.0 2310480.0 2354830.0 2775090.0 2811830.0 2432520.0 3390100.0 2779070.0 False True 2348388.099942873 2523476.8178149723 2746820.1268533804 2602986.5311011486 2654703.64232908 2583254.5601591966 2675811.040666287 2614046.994486276 2554655.280012641 2601707.37331847 0.9026334491059658 0.9699310705324578 1.0557759704350684 1.0004916608976846 1.0203698039042006 0.9929074217383114 1.0284827064364652 1.0047428935684135 0.9819149171853966 1.0 21.31102727357696 4.59317126089815 3.4775013087244706 1.010909504562072 0.902679020401366 0.7289668126430799 0.02012196711480585 0.11897909006952789 2.3659234542884238 0.004638561606691493 0.02618427711894595 39189.63881561466 -4.59317126089815 -0.10823048416070591 IFQIHTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IFQIHTSR 8 0 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ; 177.36 0.00025528 1064250000.0 310450.0 781540.0 872110.0 997530.0 906090.0 794410.0 832590.0 737010.0 586910.0 831330.0 False True 308778.57169423753 807553.0864490942 994895.5074839906 1123817.1957209446 1021475.1906838091 739494.3065399915 792314.4408973313 792009.4286609486 442273.8946910772 778273.8076625796 0.3967479936419862 1.0376207942477857 1.278336104451465 1.4439869165019816 1.3124882022583362 0.9501724190885261 1.018040737201372 1.0176488285525396 0.5682754453980352 1.0 19.569918279342172 1.4145706566832905 5.9552470703774265 0.7802335573819823 1.0830661822802388 0.12593900042686823 0.28465339160925746 0.39118639328011334 23.299102583149864 0.19678082279252918 0.07351705323896388 25.97590316854126 -1.4145706566832905 0.30283262489825646 IFQVAQELSGEDMHQFHR ddPTM_BT-474_Trastuzumab_2h_R1 4 IFQVAQELSGEDMHQFHR 18 0 C4P0D6;C4P0D8;Q99598;C4P0D4;Q5VVQ1 C4P0D6 DISC1;TSNAX Translin-associated protein X 0 ;;; 132.64 8.305e-06 391569000.0 296092.0 380163.0 330567.0 354800.0 383335.0 355283.0 405400.0 83304.0 392571.0 258999.0 False True 294497.87357091357 392816.4956416132 377107.96026012785 399717.64362153603 432150.4400454457 330723.12245622295 385789.25322160794 89520.56748914089 295827.1372318942 242469.46207980003 1.2145771720893672 1.6200658518899667 1.5552802279736837 1.6485277782733048 1.782288113062333 1.3639784557585954 1.5910838829453888 0.3692034729704578 1.2200593620920948 1.0 17.887443532333286 1.7597481808363615 24.999999999999996 0.811713580956157 1.5499061179180906 0.6073359200307749 0.24807306645578853 5.734662288872675 6772.254330547867 0.10721728517709282 0.059458851108890265 57.51063738062409 -1.7597481808363615 0.7381925369619337 IFSNTDPDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFSNTDPDKK 10 1 Q53H82 Q53H82 LACTB2 Beta-lactamase-like protein 2 0 ; 100.72 0.0061247 1627690000.0 3666600.0 3027000.0 2567000.0 2476300.0 2611000.0 3877400.0 3496000.0 3443900.0 5493100.0 3576800.0 False True 3646859.4329975587 3127751.8651398565 2928411.287236015 2789799.3260992416 2943495.3733905265 3609364.464417828 3326885.1239830796 3700901.305769853 4139399.108768897 3348525.561747452 1.089094099999768 0.9340683854620531 0.8745375339789261 0.8331426099800668 0.8790422289189402 1.0778966437198871 0.9935373234083723 1.1052331055936486 1.2361856083931826 1.0 21.675094550563887 2.309338119713475 1.464234421126249 1.1135526506837565 0.918984295728679 0.41690272351370594 0.09144611950727358 0.3859793902462894 1.6491889077381325 0.05146983906020316 0.032760029252315345 203.86286331430833 -2.309338119713475 -0.19456835495507752 IFTSIGEDYDER ddPTM_BT-474_Trastuzumab_2h_R1 8 IFTSIGEDYDER 12 0 P35232;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;P35232-2 P35232 PHB Prohibitin 0 ;;;;;;; 331.7 8.117699999999995e-58 8497781000.0 3046159.0 4037068.0 3701836.0 3404634.0 4334568.0 4961201.0 3774989.0 3433940.0 4331406.0 3768526.0 False True 3029758.8184040845 4171439.3679208597 4223022.331864674 3835660.3153150124 4886549.541802615 4618244.852280956 3592378.360211601 3690198.039994 3263989.029166821 3528015.444282572 0.8587714159001341 1.182375597215995 1.1969965547368608 1.0872005454315694 1.3850703374106978 1.3090205882644836 1.0182433770332084 1.0459699222616097 0.9251629083586846 1.0 21.750425445792484 2.117905575507576 9.269803015042806 1.0047146961898028 1.1775859894240404 0.28460399724819674 0.13364546745679298 0.38146070906729884 29.225783530632718 0.05162304711668802 0.03811374387533565 131.19146309673343 -2.117905575507576 0.17287129323423756 IFVEFTSVFDCQK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFVEFTSVFDCQK 13 0 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ; 110.08 0.0012088 101950000.0 142429.0 165862.0 159890.0 146503.0 142718.0 176650.0 189344.0 166845.0 227510.0 176595.0 False True 141662.1780893494 171382.61640430376 182401.12221120653 165050.26477870904 160892.2913441399 164438.60128937135 180184.70735567863 179295.82112174318 171443.20897781072 165324.55590941387 0.8568731808175565 1.03664344030181 1.1032911669283383 0.9983408929835256 0.9731905248987782 0.994641119008794 1.0898847201767599 1.0845081067085072 1.0370099470991438 1.0 17.334941500686007 2.250450368945922 24.9458457025383 1.063601496097596 1.0000184893564645 0.16385977422372955 0.0625530501762927 366.16056648269466 768240.4224905337 0.02213240558108405 0.018385382878895698 178.01244650943855 -2.250450368945922 -0.06358300674113138 IFVGGIKEDTEEYNLR ddPTM_BT-474_Trastuzumab_2h_R1 6 IFVGGIKEDTEEYNLR 16 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;;; 257.35 1.0411e-26 7998647000.0 4060269.0 4361205.0 3745296.0 4190743.0 3989272.0 5061405.0 5079060.0 4705540.0 6546034.0 5230609.0 False True 4038408.962842296 4506365.072020906 4272601.12210358 4721290.634113437 4497282.142932361 4711521.985615798 4833366.463906601 5056691.289047964 4932851.633061648 4896787.055470335 0.8247058565331891 0.9202697648423821 0.8725315341884308 0.964160904003198 0.9184148895975216 0.9621659942007132 0.987048529812444 1.0326549289904277 1.007364947093426 1.0 22.22340402885938 3.6549404260070766 0.4337264339447774 1.0250768184731829 0.8125397503594952 0.7963240287553246 0.027788717134469093 0.8947640845588123 0.2539953949290726 0.023469222844409676 0.0904950522040756 4517.939656536812 -3.6549404260070766 -0.21253706811368767 IFVGGIPHNCGETELR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFVGGIPHNCGETELR 16 0 K7EQ55;K7EK33;Q96EP5;Q96EP5-2;K7EQ02 K7EQ55 DAZAP1 DAZ-associated protein 1 0 188.25 1.2082999999999998e-09 619200000.0 389820.0 549050.0 421040.0 439630.0 479990.0 451930.0 410080.0 421950.0 505530.0 456090.0 False True 387721.2524330732 567324.7973422665 480318.77225471445 495287.11292372056 541113.8813763765 420689.1428287896 390242.8637422718 453438.0516186855 380948.9052549457 426981.94572170614 0.9080506946909135 1.3286856810382133 1.1249158824335201 1.1599720266545734 1.2672992073745855 0.9852621335492766 0.9139563572943673 1.061960713238734 0.8921897262214374 1.0 18.703815543419747 2.681783399903994 10.383568111795755 0.9768258414370448 1.1655294619344347 0.41258535087048054 0.11132027865669832 0.6667858673746175 120.08781600015104 0.03367530399584131 0.03175760112257153 480.59959435236425 -2.681783399903994 0.18870362049738998 IFVGGLNPEATEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFVGGLNPEATEEK 14 0 Q99729-3;D6R9P3;D6RD18;D6RBZ0;Q99729-2 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 ; 194.96 1.9452e-07 290960000.0 458140.0 416480.0 344010.0 349990.0 361540.0 463610.0 421150.0 425910.0 614070.0 442850.0 False True 455673.42514413904 430342.2850325239 392443.6178114773 394298.6981147166 407579.9759845312 431561.7319205516 400777.3655507643 457693.5669271583 462740.6766164311 414586.9338570404 1.0991022338906278 1.0380025270668958 0.9465894502763111 0.9510639769720295 0.9830989418616715 1.0409438809505862 0.9666907777874206 1.103974895371358 1.1161487225644098 1.0 18.661315123550096 1.7206760511445103 9.39691350729988 1.0815023751897466 1.0014281776929341 0.2627883523691993 0.05282584030297804 0.12749464312941466 32.013214168967835 0.02577724824918388 0.013869094964531354 52.56250459943144 -1.7206760511445103 -0.08007419749681244 IFVGGLS(ph)PDTPEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 IFVGGLS(0.997)PDT(0.003)PEEK;IFVGGLS(0.994)PDT(0.006)PEEK;IFVGGLS(0.854)PDT(0.146)PEEK 225.29 2.9707e-12 418947000.0 677640.0 645360.0 567440.0 533600.0 522220.0 693530.0 693300.0 621160.0 1016310.0 728730.0 True False 673991.6615328818 666840.4174716421 647330.6197231023 601153.7052887589 588721.621559557 645587.9034940155 659762.430336805 667514.1133865692 765854.0183562873 682221.8275028578 0.9879362318263827 0.9774539461929614 0.948856506237175 0.8811704361456255 0.8629475015691885 0.9463020347165763 0.9670790404812154 0.9784414489197402 1.1225879728292323 1.0 19.379881388764204 1.4960134076644733 3.0731640574557773 1.0607107330551668 0.9360072061725635 0.502553649243247 0.04727375117457385 0.18817535787922576 3.624891253320751 0.03612719642267779 0.013015673331312894 31.333824575091235 -1.4960134076644733 -0.12470352688260333 IFVGGLSPDT(ph)PEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 IFVGGLS(0.366)PDT(0.634)PEEK;IFVGGLS(0.357)PDT(0.643)PEEK 227.47 2.2568e-11 370770000.0 1162520.0 962080.0 930370.0 861220.0 822090.0 1089370.0 1085750.0 999300.0 1480970.0 1026300.0 True False 1156261.121488115 994102.2512103588 1061358.0090789911 970250.3636971235 926778.2885908153 1014064.4160011479 1033228.1245322165 1073872.8403425815 1116004.7874812905 960800.655340363 1.2034349842096124 1.034660255157922 1.1046599554025134 1.0098352434547548 0.9645895675024333 1.055436848803893 1.075382410273436 1.117685374561035 1.1615362471687183 1.0 19.873877609510302 -1.0362856045651765 7.987135394320961 0.9999999984618626 1.076614766159367 0.11277349858883501 0.06707287590523979 1.8940239627534484e-09 2.4573889253171757e-10 0.06585895290088896 0.015523103834709086 0.09198444565851006 1.0362856045651765 0.07661476769750442 IFVNDDR ddPTM_BT-474_Trastuzumab_2h_R1 8 IFVNDDR 7 0 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;;;;; 204.1 0.00063089 15555040000.0 7406000.0 9847220.0 9025930.0 9634290.0 9245850.0 8975520.0 8907730.0 8346600.0 9673700.0 8879770.0 False True 7366126.918883963 10174978.764929807 10296702.489210047 10853990.126173995 10423254.19305355 8355063.428501439 8476829.069066875 8969465.675176013 7289746.255938861 8313055.47624643 0.8860913944255271 1.2239758045647118 1.2386182816452571 1.3056559236478074 1.2538415294877752 1.005053250561727 1.0197007698659546 1.0789613639419582 0.8769033572274895 1.0 22.986947408560866 2.7274103482906833 24.143074127035955 1.009378358937027 1.1940443770535831 0.3822940411459034 0.11677124639919122 504.19804718797263 1091710.3293545456 0.03814658873376921 0.03628842988844951 533.8390614334853 -2.7274103482906833 0.18466601811655603 IFWEVFHELPLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IFWEVFHELPLEK 13 0 Q5GLZ8-6;Q5GLZ8-3;Q5GLZ8-2;Q5GLZ8 Q5GLZ8-6 HERC4 Probable E3 ubiquitin-protein ligase HERC4 0 ; 156.81 4.7359e-05 178575000.0 315900.0 316590.0 293060.0 292940.0 283710.0 348120.0 339160.0 316370.0 426680.0 358780.0 False True 314199.2294997892 327127.50676730374 334320.30067681643 330026.1739641851 319838.7868190834 324055.2837863345 322753.5350829806 339979.1358943082 321530.4312190774 335882.3532329883 0.9354442901674017 0.9739347828743725 0.9953494057037039 0.9825647902831591 0.9522345658845134 0.9647880594713775 0.9609124503754422 1.0121970762139985 0.9572709852846734 1.0 18.357596474915354 1.7646939674904685 24.999957030479425 0.9907148059016122 0.9678675445039575 0.2190656213642197 0.02006932858668687 26.261975228237617 25139.291535024837 0.009268447197378215 0.005139886075009266 58.16931739751833 -1.7646939674904685 -0.022847261397654695 IFYDMK ddPTM_BT-474_Trastuzumab_2h_R1 1 IFYDMK 6 0 P60981;F6RFD5 P60981 DSTN Destrin 0 106.76 0.074087 2515500000.0 2307700.0 2276800.0 2013000.0 2067700.0 1837200.0 2464600.0 2505700.0 2185800.0 2988900.0 2315900.0 False True 2295275.5996095706 2352581.911645337 2296412.902690341 2329470.607993943 2071156.5300624573 2294228.003044354 2384489.7182964543 2348915.495267503 2252325.6442080736 2168097.279258256 1.0586589548208947 1.0850905695754558 1.0591835175753666 1.0744308524712027 0.955287638556069 1.0581757677539494 1.099807532211945 1.0833994939890834 1.038848978666969 1.0 21.047998059020987 -2.998711434925137 1.2296812389076173 5.411990694121725e-05 1.0591412463626642 0.16723739299275886 0.037878168635445804 252409.66865026462 5526.446018647608 701971.2947771837 0.01046094066356345 0.0010029714367249106 2.998711434925137 1.059087126455723 IFYPEIEEVQALDDTER ddPTM_BT-474_Trastuzumab_2h_R1 6 IFYPEIEEVQALDDTER 17 0 P33316-2;H0YNW5;P33316;A0A0C4DGL3;H0YKC5 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 0 ;;;;; 227.42 4.0903e-15 823403000.0 104870.0 111270.0 102103.0 110420.0 94923.0 116479.0 109699.0 99781.0 127206.0 121202.0 False True 104305.39157215228 114973.55468586445 116478.21490481448 124399.16067838222 107010.88139729945 108427.08089207295 104392.44027912457 107227.16489765153 95857.7857730711 113466.78459374739 0.9192592523495202 1.0132793935909248 1.0265401925492919 1.0963486902689341 0.9431031449462287 0.9555843261116597 0.9200264258204522 0.9450092842726091 0.8448092198635666 1.0 16.791910510146636 3.0324212639833825 24.938996982604735 0.9318768827538435 1.0153471922665502 0.3420135169019217 0.05387036951541131 203.3018742067637 156382.02407835028 0.015351146108135738 0.0183480116237405 1077.50988734526 -3.0324212639833825 0.08347030951270673 IFYPEIEEVQALDDTERGS(ph)GGFGSTGKN ddPTM_BT-474_Trastuzumab_2h_R1 1 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 P33316-2;H0YNW5;P33316;A0A0C4DGL3 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 1 IFYPEIEEVQALDDT(0.15)ERGS(0.849)GGFGSTGKN 119.65 8.4942e-05 35459000.0 19414.0 21611.0 17429.0 17474.0 12533.0 22001.0 22821.0 21497.0 29808.0 26107.0 True False 19309.47718109818 22330.309070874635 19882.85170441625 19686.20660835041 14129.003261089048 20480.122654783263 21717.06104531401 23101.215299554162 22462.217806736353 24440.828908672804 0.7900500123482405 0.9136477798815877 0.8135097127315858 0.8054639505849485 0.5780901831883201 0.83794713883521 0.8885566494681256 0.9451895181573289 0.9190448446192289 1.0 14.577005594417736 2.167794284213403 2.696364876518022 0.9433154240271536 0.7856328628364998 0.46230462003118644 0.08127406776553854 0.2786070367684491 4.090832768903149 0.03826969304338011 0.025736805797390915 147.161526538464 -2.167794284213403 -0.15768256119065382 IFYPETTDIYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 IFYPETTDIYDR 12 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;;; 227.27 3.1044e-11 763550000.0 554294.0 620480.0 613290.0 551130.0 507690.0 621640.0 574970.0 504021.0 623480.0 577330.0 False True 551309.7426918527 641132.30171192 699635.901187758 620903.0014913676 572341.3121856143 578667.4899831582 547156.5045013013 541633.6063867788 469831.7082039711 540484.3051229189 1.0200291432449122 1.1862181669939726 1.2944610871330375 1.1487900677340845 1.058941595085634 1.0706462417101188 1.0123448531532566 1.0021264285622475 0.8692790960823927 1.0 19.04389319924209 2.532468885891922 0.9791451401887721 0.9546224685425804 1.1707627346912106 0.5638701091471934 0.07404121233727666 0.4069293623359803 0.7950855598086326 0.04810228908505976 0.03592529806465176 340.7759097576925 -2.532468885891922 0.21614026614863024 IFYPETTDIYDRK ddPTM_BT-474_Trastuzumab_2h_R1 3 IFYPETTDIYDRK 13 1 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;; 200.21 1.7910999999999994e-07 536700000.0 393141.0 470895.0 432582.0 441282.0 397074.0 490349.0 547257.0 449467.0 677841.0 478850.0 False True 391024.37253807177 486568.4554129613 493485.78552985267 497148.25595433696 447639.0202580126 456452.3277873881 520784.0881852427 483008.50988718035 510796.1681540513 448289.3830358889 0.8722588295310294 1.0853892013186668 1.1008197030852847 1.1089895829956262 0.9985492344844932 1.0182090967584787 1.161714079995399 1.0774480238995798 1.139434007325483 1.0 18.77407080647576 2.2657564600008864 24.981670132438794 1.1007333073859404 1.0384724765943392 0.14117394163932306 0.07523182951654248 430.91512302051797 395830.49098499876 0.025659305181999114 0.02146362794620997 184.3981077025349 -2.2657564600008864 -0.062260830791601274 IFYVNYLSELSEHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 IFYVNYLSELSEHVK 15 0 Q07960;H0YE29 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 216.39 2.2124e-12 373860000.0 198330.0 201470.0 204520.0 178170.0 173430.0 232070.0 237940.0 207350.0 334960.0 224000.0 False True 197262.21331653438 208175.80715881335 233314.63828029248 200726.30373181822 195515.28249985416 216027.54713401909 226429.9331809309 222823.5099019658 252413.5962340444 209704.12822395156 0.9406691941985522 0.9927120125002686 1.1125896292853439 0.9571881365990775 0.9323387391356237 1.0301540029927998 1.079759063870775 1.062561389654683 1.2036653659220369 1.0 17.677995736966214 2.3380274333193536 3.1798110766181544 1.0895921026593132 0.9918832951481894 0.3300903241615696 0.06629843993046051 0.3069125766827573 6.218802368297266 0.025367441283085903 0.020126496293657578 217.78473372936438 -2.3380274333193536 -0.09770880751112376 IFYYFSNS(ph)PSKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IFYYFSNSPSKR 12 1 Q08999;Q08999-2 Q08999 RBL2 Retinoblastoma-like protein 2 1 IFYYFS(0.001)NS(0.999)PS(0.001)KR 119.96 0.00028225 161860000.0 158850.0 134910.0 92070.0 92782.0 79511.0 131550.0 117410.0 105750.0 155140.0 137120.0 True False 157994.76924989402 139400.39779518291 105032.65571321399 104528.19168684723 89636.25455138033 122456.25813539098 111730.42975024416 113641.60198761935 116907.82576949387 128368.88420566193 1.2307871196945823 1.0859360401687936 0.8182096180328203 0.8142798181479934 0.6982708863292182 0.9539403484975515 0.8703856112922114 0.8852737381868353 0.9107177840869434 1.0 16.969936019246386 4.406869902803899 3.5149050114395886 0.8614693702512354 1.209539667178893 0.6918217098918937 0.07961368222172388 0.11748225165546529 2.8007948900703195 0.01980614032365234 0.07037445884614872 25519.367303285206 -4.406869902803899 0.34807029692765756 IGAEVYHNLK ddPTM_BT-474_Trastuzumab_2h_R1 5 IGAEVYHNLK 10 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90 P06733 ENO1 Alpha-enolase;Enolase 0 ;;;; 157.96 8.251599999999999e-06 11188700000.0 16375940.0 15971280.0 14973980.0 12474630.0 11746250.0 15600730.0 14807730.0 12373720.0 20869870.0 15839810.0 False True 16287773.75857798 16502874.399957363 17082186.22783265 14053916.878947385 13242065.312021647 14522288.25526824 14091423.528878147 13297109.818877025 15726770.180430511 14828899.76465639 1.0983804609293206 1.1128859633464359 1.1519523699625245 0.947738342155625 0.892990412112917 0.9793233810832725 0.9502676363396856 0.8967023872242852 1.0605486873621015 1.0 23.821908224717642 3.7325968001240675 24.811272593349823 0.9508532152683382 1.1202542375576972 0.6966498284006373 0.04804897817282154 209.4745691637911 871477.4708818857 0.012379143454248875 0.01974063365907748 5402.525185119384 -3.7325968001240675 0.16940102228935894 IGALHSIVFAGFSSESLCER ddPTM_BT-474_Trastuzumab_2h_R1 3 IGALHSIVFAGFSSESLCER 20 0 Q9NR19;Q9NR19-2;C9J7L5 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ;; 239.58 1.1385999999999999e-29 538297000.0 435754.0 490365.0 474797.0 453659.0 400918.0 516826.0 511202.0 471349.0 552608.0 535080.0 False True 433407.9488808205 506686.50259309757 541644.2905904948 511092.1828852951 451972.5308728395 481099.0350975411 486473.20627871837 506523.4558417248 416425.16296782624 500930.73629496456 0.8652053417333441 1.0114901440081405 1.0812758158875615 1.0202851329616698 0.9022655192128262 0.9604102927600237 0.9711386645523522 1.0111646563916714 0.8313028784135564 1.0 18.934251610168946 3.266996071093906 24.999732445220232 0.9533579565266955 1.0019668114098004 0.09475984943131388 0.06986468820403886 532.5990094388186 468243.95104824484 0.019479173440044635 0.026370145390877432 1849.2518893851764 -3.266996071093906 0.048608854883104846 IGDEDVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 IGDEDVGR 8 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 ;; 132.08 0.0022738000000000003 2050690000.0 4480300.0 4883100.0 4337400.0 4054100.0 4096100.0 4067600.0 4007400.0 4210400.0 5197700.0 4309500.0 False True 4456178.562608125 5045631.031603722 4948068.218643352 4567348.644323764 4617714.055513187 3786416.3861004664 3813546.75224536 4524601.427977988 3916796.4806117 4034464.0204514274 1.1045280215708828 1.25063230357899 1.2264499555729584 1.1320831270699276 1.1445669194483232 0.9385178221707858 0.9452424740718475 1.1214876139784529 0.9708344059475437 1.0 21.94394559316229 2.8996129802724604 4.533661877662314 1.0087659081204552 1.1824086547921258 0.6668447950762387 0.06220430715029695 0.15341652790970414 5.240768982930019 0.02049295109278266 0.02204215059212583 793.6206877207517 -2.8996129802724604 0.17364274667167057 IGDELYLEPLEDGLSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGDELYLEPLEDGLSLR 17 0 Q99638;F5H492;F5H4F1 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 0 ; 136.27 2.5293000000000007e-05 18278800.0 64353.0 70671.0 66969.0 65129.0 66199.0 67574.0 69456.0 65206.0 79525.0 71353.0 False True 64006.53059829044 73023.2415134783 76397.65309501707 73374.32472217322 74629.05025778613 62902.768432086064 66096.1479323137 70072.00282935904 59927.12933040488 66799.19045162335 0.9581932081144698 1.093175546286934 1.143691301922963 1.0984313466390232 1.1172148906779529 0.9416696221437127 0.9894752838386748 1.0489947910387611 0.8971235867567096 1.0 16.027542998139413 2.7432670874536593 24.972391666350816 0.9854716525871497 1.0870787278215766 0.44383093155359965 0.05905674919150706 398.4458469764735 2114147.3778629284 0.01860821817964703 0.01913971670305194 553.6905195428697 -2.7432670874536593 0.1016070752344268 IGDEYAEDS(ph)S(ph)DEEDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGDEYAEDSSDEEDIR 16 0 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 2 IGDEYAEDS(1)S(1)DEEDIR;IGDEYAEDS(1)S(1)DEEDIR 216.19 2.2522999999999998e-14 6377100000.0 4644300.0 4631200.0 3667900.0 4052500.0 4103800.0 4665700.0 4275700.0 4166100.0 5257600.0 4502500.0 True False 4619295.604830236 4785346.692380484 4184308.43804168 4565546.084487814 4626394.60487172 4343171.140876425 4068868.056239835 4476995.537027147 3961934.92823058 4215146.595215809 1.0958801788941663 1.135274084609976 0.9926839656753267 1.083128660262898 1.09756434334281 1.0303725013516551 0.9652969272428152 1.0621209573371746 0.9399281469183957 1.0 22.007151375702247 2.5449299096414477 4.793856496538297 1.0021676239004664 1.0786339063058976 0.4610671854479562 0.0448887674641664 0.22467531053384018 9.97648797497265 0.014937929277359287 0.013782976196267211 350.6952710208723 -2.5449299096414477 0.07646628240543119 IGDEYFTFITDCKDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGDEYFTFITDCKDPK 16 1 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 196.64 4.1381e-11 2364640000.0 1841270.0 1274050.0 1128330.0 1057240.0 1020440.0 1668160.0 1592450.0 1495410.0 2524000.0 1542810.0 False True 1831356.8069043271 1316455.9840705118 1287189.0563798274 1191086.47559874 1150386.9853782565 1552844.0256262543 1515417.109750243 1607005.087738117 1901994.019867235 1444346.5449339063 1.2679483419875044 0.91145437962103 0.8911912870873586 0.8246542215069614 0.7964757415131966 1.075118731770368 1.049206033735892 1.1126173932251515 1.3168543425665693 1.0 20.461985501767234 2.246932904826749 1.8501846320543127 1.1447282818937667 0.9317715801199339 0.2544020065711291 0.14416747711217517 0.4550605636466559 3.1311027600065744 0.07307551254281662 0.047015342145744626 176.57650024352893 -2.246932904826749 -0.21295670177383286 IGDLQAFQGHGAGNLAGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGDLQAFQGHGAGNLAGLK 19 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;H0YFS2 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 154.19 3.831e-08 264480000.0 133150.0 165130.0 177490.0 121120.0 146080.0 199220.0 142300.0 126660.0 203390.0 151380.0 False True 132433.13519435556 170626.25222680715 202479.04922926382 136453.77958128648 164682.4221160049 185448.39031343657 135416.40536121058 136112.01236644786 153267.25978636942 141718.79879706164 0.9344782507223833 1.2039775504387416 1.4287381134185988 0.9628488297920549 1.1620365365347662 1.3085659198889683 0.9555288819172398 0.9604372427779142 1.0814885610612954 1.0 17.112671616831342 2.2161329224624264 24.999481494518765 0.9908014853463605 1.1708880586462422 0.25412793324639615 0.14009282398958536 317.3978357753811 353791.6511823611 0.05239379684384422 0.038723453329551606 164.48750853345604 -2.2161329224624264 0.18008657329988176 IGDPLLEDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGDPLLEDTR 10 0 P49189-3;P49189;P49189-2 P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase 0 ; 128.36 0.00077152 331690000.0 598300.0 661430.0 643230.0 618790.0 616060.0 726350.0 676310.0 593560.0 740060.0 651990.0 False True 595078.8192773788 683445.2977071212 733791.1929446129 697128.750554032 694511.5893262994 676139.134143986 643594.3015449075 637854.4612366089 557682.1292959371 610379.4400032777 0.9749326079433202 1.1197056337668436 1.2021885811564565 1.1421235789827529 1.1378358178685866 1.1077357621029227 1.0544167436921719 1.045013018841499 0.9136646694602663 1.0 19.219346841745445 1.6974453459588974 1.5072080751129886 0.9619471708208923 1.120305641981647 0.4944524551227042 0.05966507162661695 0.31063242464058916 1.3761959538622697 0.04831377464414086 0.018306788079604893 49.82477497477542 -1.6974453459588974 0.15835847116075474 IGDQEFDHLPALLEFYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGDQEFDHLPALLEFYK 17 0 P46109 P46109 CRKL Crk-like protein 0 ; 142.78 5.7363e-07 370670000.0 717130.0 635130.0 563460.0 499640.0 530270.0 758670.0 734220.0 643610.0 1018550.0 765200.0 False True 713269.0517606334 656269.9181058072 642790.2703178836 562894.372770757 597796.7413434684 706224.9286170809 698702.9736072249 691639.4463853593 767542.000370749 716364.2808793205 0.9956792525795846 0.9161120056129141 0.8972952553257869 0.785765549448972 0.8344870861088814 0.9858460946017664 0.9753459130452222 0.9654856681804235 1.0714409147097745 1.0 19.45033387836736 2.6765301364696783 8.167474292672505 0.9931562515321242 0.8826981689819408 0.49216631766290464 0.057549796155593316 0.3285131027053959 40.163354259172685 0.020038784489446557 0.018902695767431386 474.82123849213167 -2.6765301364696783 -0.11045808255018341 IGDYVQQHGGVSLVEQLLQDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGDYVQQHGGVSLVEQLLQDPK 22 0 B3KWE1;P12081-4;P12081;B4DDD8;P12081-3;P12081-2;B4E1C5;E7ETE2 B3KWE1 HARS Histidine--tRNA ligase, cytoplasmic 0 189.78 2.011e-17 325580000.0 178930.0 167110.0 152340.0 143800.0 124270.0 206890.0 208310.0 186130.0 237160.0 187070.0 False True 177966.66076099206 172672.1553298719 173788.14783698268 162005.0652558538 140095.04789400272 192588.1812666746 198233.2494785227 200019.96574898914 178715.095781186 175131.03244131533 1.0161914669270675 0.9859597863544407 0.9923321150705678 0.9250505921053146 0.7999441671820623 1.099680499692189 1.1319138973553913 1.142116065672221 1.0204650386051466 1.0 17.418075220015275 2.6634421769342578 24.99920181723584 1.0964274306069055 0.9478758875513428 0.4729073076363981 0.0699459969243811 106.68491849337079 35503.924234887745 0.023269593254419314 0.02193878408024555 460.725422458449 -2.6634421769342578 -0.14855154305556273 IGEEEIQKPEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGEEEIQKPEEK 12 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 ; 154.47 5.6067e-05 684140000.0 899630.0 674910.0 509630.0 498660.0 551570.0 935510.0 968910.0 848420.0 1559760.0 854050.0 False True 894786.4920382885 697373.9713582891 581381.4742166309 561790.3048712388 621809.1700884772 870840.3956536658 922040.1217043604 911733.4085894668 1175378.0477132017 799543.7978110088 1.119121297029675 0.872214847101009 0.7271414971991994 0.7026385626519879 0.7777049509868834 1.0891715976508765 1.1532077720178957 1.1403170296431675 1.4700608658727041 1.0 19.60881753897928 2.5788494117065306 3.2617316892252144 1.1908194319716352 0.8280037978798332 0.5430859601368152 0.1533408929174869 0.19736518879314358 3.9820496822195888 0.054355552000392625 0.04980361012550884 379.1834832006493 -2.5788494117065306 -0.36281563409180195 IGEEFLTDLSQLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGEEFLTDLSQLKK 14 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 236.3 4.6807e-17 1274570000.0 2038790.0 1765950.0 1523310.0 1521100.0 1348360.0 2053520.0 2103960.0 1896170.0 3341800.0 2140630.0 False True 2027813.3811708617 1824728.57821068 1737778.807152122 1713671.1040381033 1520065.6536441422 1911564.9958661203 2002183.416892289 2037671.8339561615 2518258.1678258 2004013.1607144526 1.0118762795190048 0.9105372229991465 0.8671493986259975 0.8551196856547393 0.7585108139221113 0.9538684841693487 0.999086960176693 1.0167956348299176 1.2566075997864272 1.0 20.934460552325923 1.895263467994487 1.5651043916762217 1.1137993704030154 0.8830862586069295 0.5204277410128862 0.08749701631294855 0.298711445036159 1.3686115664643703 0.06127039470682819 0.02721962602150891 78.57121482043435 -1.895263467994487 -0.2307131117960859 IGEEQSAEDAEDGPPELLFIHGGHTAK ddPTM_BT-474_Trastuzumab_2h_R1 3 IGEEQSAEDAEDGPPELLFIHGGHTAK 27 0 Q16576;E9PC52;Q16576-2;Q5JNZ6 Q16576 RBBP7 Histone-binding protein RBBP7 0 ;; 283.17 1.776699999999999e-61 3756020000.0 1432210.0 1188630.0 1077980.0 962570.0 946810.0 1513090.0 1410430.0 571043.0 1813020.0 1184170.0 False True 1424499.1404934905 1228192.8310079917 1229750.2140298726 1084431.263305475 1067380.6413174605 1408493.649730741 1342202.1125341682 613657.1283575996 1366225.5142233334 1108595.2567810563 1.2849587185044435 1.107882090867141 1.109286916489797 0.9782030517199357 0.9628226666030779 1.27052108613605 1.2107233044018413 0.5535447897724451 1.232393432920089 1.0 20.080301309381664 IGEEQSPEDAEDGPPELLFIHGGHTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGEEQSPEDAEDGPPELLFIHGGHTAK 27 0 Q09028-3;Q09028;Q09028-2;Q09028-4;H0YF10;H0YCT5;H0YDK2;H0YEU5 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 ; 288.94 2.621599999999999e-63 2816800000.0 2234800.0 1815070.0 1583840.0 1611250.0 1719140.0 2145620.0 2036730.0 997640.0 3061100.0 1875150.0 False True 2222768.0851096213 1875483.5077170157 1806830.905015928 1815234.0847948156 1938062.2888589012 1997298.3396462023 1938205.588835827 1072088.9627132714 2306732.921638507 1755476.321603318 1.2661908666928157 1.0683616091181978 1.029253931130046 1.0340407685686808 1.10400935917428 1.1377529363779868 1.1040909894276547 0.610711149743169 1.3140210968677226 1.0 20.74343110616611 IGEGT(ph)YGVVYK ddPTM_BT-474_Trastuzumab_2h_R1 5 IGEGTYGVVYK 11 0 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6;P06493-2;G3V317;K7ELV5;G3V5T9;P24941;P24941-2;E7ESI2;Q00526 P06493;G3V5T9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 IGEGT(0.757)Y(0.243)GVVYK;IGEGT(0.934)Y(0.066)GVVYK;IGEGT(1)YGVVYK;IGEGT(0.997)Y(0.003)GVVYK;IGEGT(0.852)Y(0.148)GVVYK 206.03 3.1065e-07 20712800000.0 6058740.0 4515410.0 3957440.0 3611060.0 3710990.0 6494330.0 5987190.0 5133260.0 8683720.0 6357660.0 True False 6026120.417029299 4665702.692227017 4514613.153314877 4068219.825749675 4183562.5797389993 6045392.253108424 5697566.74641312 5516329.927366121 6543733.561886489 5951908.695733434 1.012468558422118 0.7839002462473222 0.7585151896821154 0.6835151602150648 0.7028942804075513 1.0157064837775491 0.957267162128573 0.9268169606365848 1.0994344665564677 1.0 22.504920964516266 2.7302727871707546 24.97556665121717 0.9861454723719464 0.7805450491181867 0.557136243256142 0.09379955528965007 496.2848505360852 1495563.102063471 0.031190920251760776 0.02985458879682662 537.3692204179926 -2.7302727871707546 -0.2056004232537597 IGEGTY(ph)GVVYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGEGTYGVVYK 11 0 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6;P06493-2;G3V317;K7ELV5;G3V5T9;P24941;P24941-2;E7ESI2;Q00526 P06493;G3V5T9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 IGEGT(0.109)Y(0.891)GVVYK;IGEGT(0.235)Y(0.765)GVVYK 179.51 7.2887e-05 7802490000.0 1073610.0 786870.0 789345.0 621133.0 645368.0 1122440.0 1132830.0 851190.0 1498990.0 1053270.0 True False 1067829.803049286 813060.4922770397 900477.9148902661 699768.3741137987 727551.7894041736 1044848.3647395531 1078030.6850691508 914710.12005524 1129583.999936919 986049.4068501865 1.082937422436404 0.8245636442034495 0.9132178455101272 0.7096686730425839 0.7378451671384787 1.0596308435265862 1.0932826261848148 0.9276514074250791 1.145565315581129 1.0 19.911300410321918 2.7214507466391185 24.823878309801216 1.0354135143259626 0.8473415771335704 0.4309902109086249 0.1096552532274763 759.1069740355161 1101349.9447409501 0.03593519339202475 0.033959488227603994 526.5634939129152 -2.7214507466391185 -0.18807193719239224 IGEHTPS(ph)ALAIMENANVLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IGEHTPSALAIMENANVLAR 20 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BR04;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 1 IGEHT(0.001)PS(0.999)ALAIMENANVLAR 341.57 1.2827999999999993e-80 82502000.0 46011.0 57340.0 59960.0 35906.0 38627.0 73655.0 62868.0 52406.0 72606.0 55504.0 True False 45763.28188830269 59248.527237238035 68401.84681833723 40451.69591847487 43545.91948983379 68563.40321522026 59826.83466091769 56316.80183227591 54713.224170554895 51961.68720063485 0.8807120082841262 1.1402348620526348 1.3163900270255566 0.7784908092434043 0.8380389828700897 1.3194991715816067 1.1513643587036324 1.0838139572878966 1.052953187591769 1.0 15.665160655532905 2.7463952852777664 24.993658792204005 1.1255263046216573 1.0053731134997033 0.13306650229430994 0.16461853777652585 1474.7526022776483 4704663.861200581 0.053326419857615555 0.05564448475448935 557.6931179989231 -2.7463952852777664 -0.120153191121954 IGEHTPSALAIMENANVLAR ddPTM_BT-474_Trastuzumab_2h_R1 7 IGEHTPSALAIMENANVLAR 20 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BR04;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;;;; 314.73 2.1622999999999993e-66 15295920000.0 2775870.0 3060960.0 2723280.0 2649250.0 2311110.0 3603090.0 3334450.0 2758100.0 3755890.0 3189510.0 False True 2760925.0243481477 3162842.2032106044 3106694.1528259087 2984644.778366276 2605416.1594778216 3354016.869061545 3173149.914664011 2963923.427348018 2830301.235847522 2985952.741123109 0.9246378840241385 1.0592405431108605 1.0404364777914688 0.9995619613335404 0.8725577346203557 1.123265222141458 1.0626926109589032 0.9926223501558818 0.9478720801130155 1.0 21.509759901344896 2.7204718927915392 24.999739541737608 1.02527507054442 0.9882523574652307 0.09995772163984973 0.06634821799713973 2583.998979014599 3571242.586439049 0.022232156793603415 0.02099579494623319 525.3780119445327 -2.7204718927915392 -0.03702271307918936 IGELGAPEVWGLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 IGELGAPEVWGLSPK 15 0 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK 246.38 3.7711e-18 4599994000.0 4704267.0 3330856.0 2839294.0 2761917.0 2800068.0 4066354.0 4013438.0 3804914.0 6152940.0 3752952.0 True False 4678939.749165199 3441721.5284150247 3239041.9156141374 3111575.4090142734 3156640.062496696 3785256.5191477034 3819292.6711179637 4088856.0036418037 4636630.382171909 3513435.390296142 1.3317278473621847 0.9795886777712817 0.921901659145388 0.8856219236614462 0.8984483025403316 1.077366195377411 1.087053623261887 1.1637772007804477 1.3196856828441905 1.0 21.744450937942453 2.1421266827232617 1.9625015832845711 1.1743304951148434 0.9935966934385011 0.17640863494563785 0.14009198854487565 0.5055073703531167 3.8119337214924247 0.07442316102681852 0.04397410842062382 138.71604014307232 -2.1421266827232617 -0.18073380167634234 IGELVGVLVNHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGELVGVLVNHFK 13 0 J3QRN6;O94832;K7EIG7 J3QRN6 MYO1D Unconventional myosin-Id 0 ; 174.05 2.0635e-05 156916000.0 275760.0 309180.0 281220.0 264010.0 255780.0 333230.0 351170.0 305260.0 430670.0 338530.0 False True 274275.3387998161 319470.8693967436 320813.33159194136 297433.6389304447 288352.06687316316 310194.5944390452 334182.56550032547 328040.0512788717 324537.1491823385 316924.7255698853 0.8654273922825736 1.0080339071755284 1.0122698095425142 0.9384993183968457 0.9098440216510606 0.9787642598136256 1.0544540660227997 1.0350724472159727 1.0240196582919328 1.0 18.273780693530664 2.403659344979677 5.242625479073659 1.0319701257628193 0.9525231216908967 0.4483672491380578 0.04230525544033212 0.1945526777874023 9.73641645429829 0.015123051560515344 0.01260949196617807 253.31408878035148 -2.403659344979677 -0.07944700407192262 IGEMPLTDSILCDGLTDAFHNCHMGITAENVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGEMPLTDSILCDGLTDAFHNCHMGITAENVAK 33 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 328.81 2.7171999999999982e-117 428530000.0 58454.0 41819.0 60918.0 49690.0 52180.0 66906.0 72907.0 31136.0 95717.0 70552.0 False True 58139.2901588499 43210.92013488068 69494.72489125202 55980.748905169494 58824.81370490918 62280.94569978307 69380.20987821343 33459.52642540442 72128.82789208871 66049.31095739393 0.8802406764902286 0.654222118422318 1.0521642676345344 0.8475599229381923 0.8906196423889264 0.9429461836469165 1.0504304870488073 0.506584034570595 1.0920451227510377 1.0 16.011255890551666 4.253770006729467 24.998175386720117 0.889009381097284 0.7672315214763858 0.0947648895675769 0.16811899931777513 666.0571709013436 1094712.936039272 0.04116111691381111 0.11180137790256874 17937.834250820608 -4.253770006729467 -0.12177785962089815 IGEWELIQESGVPLKPLFGPGYTGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGEWELIQESGVPLKPLFGPGYTGIR 26 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ; 225.3 1.664e-34 1323710000.0 925030.0 924070.0 842610.0 732810.0 447820.0 939170.0 924420.0 908830.0 1133490.0 877240.0 False True 920049.7412604938 954827.11133789 961242.1639025869 825583.6708632973 504847.22256290546 874247.3884683792 879702.2729726648 976651.509545229 854156.5774878421 821253.7921570509 1.1202989259190534 1.1626456041438837 1.1704568953987438 1.0052722784936845 0.6147274172541805 1.0645276731960516 1.0711698154380473 1.1892200911243536 1.0400640893777438 1.0 19.647468601562544 3.7346748833605914 23.664002283181976 1.008230920846818 1.1522849911508808 0.19759241690302587 0.14045755242500652 304.4382520902879 1854031.816745148 0.04158884407336489 0.06730716755847378 5428.438017379688 -3.7346748833605914 0.1440540703040627 IGEYLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGEYLEK 7 0 Q86VP6;Q86VP6-2;H0YH27;Q86VP6-3 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 101.99 0.020244 222100000.0 414090.0 395140.0 331660.0 334030.0 358130.0 461270.0 450910.0 391320.0 600650.0 433450.0 False True 411860.58544972417 408291.9960328263 378354.84515960113 376318.1637511323 403735.73269718554 429383.49061278504 429097.7606565241 420522.285482697 452627.85579764476 405786.8499047854 1.0149677978632474 1.0061735517763297 0.9323979947807057 0.9273789030852831 0.9949453334722869 1.058150333638304 1.0574461956004944 1.03631324076019 1.1154325378061172 1.0 18.630362587721255 2.8523447040551937 3.9203355942867133 1.0543992126521597 0.9693101094089772 0.5335742255493157 0.037034488856932515 0.18790613381430019 5.076347823835082 0.01189298782606941 0.012685897988512686 711.7782353123231 -2.8523447040551937 -0.08508910324318253 IGFPWSEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IGFPWSEIR 9 0 P15311;E7EQR4;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y7M3;P35241-4;P26038 P15311;A0A2R8Y5S7 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 105.57 0.007158199999999998 194190000.0 148340.0 147740.0 204560.0 158560.0 146080.0 207990.0 271210.0 244850.0 309370.0 239530.0 False True 147541.35392212332 152657.43658928413 233360.26993260623 178633.67974247682 164682.4221160049 193612.14085579608 258090.53617718865 263121.95032310707 233129.9088456129 224242.99032804943 0.6579530254492335 0.6807679310999135 1.0406580361384716 0.7966076419207134 0.7343927311845413 0.8634033133992599 1.1509413774746002 1.173378708240471 1.0396307528032989 1.0 17.77470336269386 2.330240020323146 4.4900717703531905 1.1142582783893773 0.7926018557673595 0.6373548651973149 0.10959322676347685 0.13406471142450446 4.820369333368445 0.0409330197774386 0.03346261008507307 213.91439976334792 -2.330240020323146 -0.32165642262201777 IGGAQNR ddPTM_BT-474_Trastuzumab_2h_R1 1 IGGAQNR 7 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 87.62700000000002 0.044675 96649000.0 55781.0 84461.0 100650.0 79920.0 86353.0 69504.0 83625.0 80405.0 94023.0 97188.0 False True 55480.68129385175 87272.23332724732 114820.64513451683 90037.8638056178 97349.54269566931 64699.35207481732 79579.73927147746 86405.22938831702 70852.29149365173 90985.37863316706 0.6097757917515252 0.9591896482522723 1.2619680970658846 0.9895860758972117 1.0699471075254976 0.7110961458507615 0.8746431620878932 0.949660601366334 0.778721730436629 1.0 16.473347102132774 2.765279538107829 24.879564370395745 0.8682489028872121 0.9934524361209369 0.10124715725230393 0.16825218766621225 1640.3456853573814 1527420.1704525845 0.052419909047387164 0.05558499678274142 582.4780150991538 -2.765279538107829 0.1252035332337248 IGGELEEQAVMLEDFSHELESTQSR ddPTM_BT-474_Trastuzumab_2h_R1 4 IGGELEEQAVMLEDFSHELESTQSR 25 0 O43752;O43752-2 O43752 STX6 Syntaxin-6 0 ;;; 268.75 7.623e-46 152334000.0 79816.7 85596.9 91485.0 81930.2 93101.5 105803.0 88371.7 82178.9 100153.4 91343.7 False True 79386.97575566893 88445.94107208119 104365.29279812492 92302.55491950731 104957.42416917588 98489.08764347229 84096.82325832253 88311.50681399874 75471.93655680306 85514.06686272395 0.928349903918254 1.0342852856485447 1.2204459058842672 1.0793844604266214 1.227370279765368 1.1517296657353133 0.9834267781150378 1.0327132137893236 0.8825675041038388 1.0 16.383874139007958 2.2277771859418896 24.76801229786839 0.9835441639784352 1.1130082898972626 0.3400297282213145 0.08968396746182615 237.17603999072557 544755.3278195931 0.03466893742483346 0.02586239892090734 168.95738761881887 -2.2277771859418896 0.1294641259188274 IGGIFAFK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGGIFAFK 8 0 H0YF61;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 H0YF61 SCP2 Non-specific lipid-transfer protein 0 114.54 0.010519 0.0 85132.0 155690.0 157550.0 148470.0 123670.0 122190.0 139570.0 99006.0 137320.0 110650.0 False True 84673.65877105438 160872.0475334074 179731.670550851 167266.28677702806 139418.6414504812 113743.29290432094 132818.46589082322 106394.33046228113 103479.3259937277 103588.22226776894 0.8174062351623178 1.5529955434273544 1.7350589344631875 1.6147230169145619 1.3458927897236512 1.098033062197957 1.2821772879497437 1.0270890660451588 0.998948758153608 1.0 16.66050045582226 2.8371515706661623 3.2624360948807047 1.092125569769734 1.4625947442768932 0.3205785711747604 0.24112023398856022 0.3051703755990829 6.192213006891185 0.07951515293838991 0.08430665103186394 687.3082717416944 -2.8371515706661623 0.3704691745071591 IGGIGTVPVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 IGGIGTVPVGR 11 0 A0A2U3TZH3;Q05639;P68104;A0A087WVQ9;Q5VTE0 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 ;;; 152.79 7.6255e-05 648280000.0 664243.0 778750.0 720480.0 724720.0 706020.0 764930.0 705500.0 706320.0 867000.0 775340.0 False True 660666.7894923349 804670.2229856849 821917.3214755757 816469.4776927838 795927.4620916047 712052.1895515375 671372.2697282786 759029.1850202872 653339.4672047906 725857.1373980305 0.9101884592064735 1.1085793354187774 1.1323403451289198 1.1248349511579787 1.09653459487187 0.9809811777893659 0.9249372020160014 1.0457005186188126 0.9000937423399968 1.0 19.469326100551804 2.7307890668804196 20.851583526883744 0.975377427941045 1.082399324667995 0.35426629635450135 0.0697363104819495 68.6295006561786 184135.44331836016 0.022234991742619226 0.02142225024639307 538.008412959104 -2.7307890668804196 0.10702189672695006 IGGILANELSVDEAALHAAVIAINEAIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGGILANELSVDEAALHAAVIAINEAIDR 29 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 112.39 0.00028729 2237600000.0 51829.0 59428.0 54607.0 66635.0 46761.0 70319.0 76059.0 76657.0 79093.0 74704.0 False True 51549.958422743264 61406.02505501541 62295.19094744725 75070.98416775957 52715.736175838574 65458.01304312092 72379.7355964042 82377.5345963587 59601.589941901424 69936.32676268792 0.7370984552515265 0.8780275987811308 0.890741533492758 1.073419031893037 0.7537675856885754 0.9359658431195124 1.0349376203586929 1.1778933554215254 0.8522264851590656 1.0 16.093754403488713 2.3378693631999385 3.948010232902234 1.0473249686037887 0.8774941209184932 0.25447235711953775 0.11468200029935686 0.27022655034650156 7.898617252209197 0.04183602811953491 0.03395024982290895 217.705481065141 -2.3378693631999385 -0.16983084768529544 IGGVQQDTILAEGLHFR ddPTM_BT-474_Trastuzumab_2h_R1 6 IGGVQQDTILAEGLHFR 17 0 Q99623-2;Q99623;F5GY37;J3KPX7;F5H0C5;F5H3X6;F5H2D2 Q99623-2 PHB2 Prohibitin-2 0 ;;;;; 221.49 3.6663e-15 2293960000.0 711922.0 813276.0 838243.0 788748.0 969853.0 1273098.0 784168.0 731028.0 1037225.0 921989.0 False True 708089.0910539698 840345.4000242753 956260.3282612305 888603.4159278461 1093358.030780898 1185091.7318103383 746234.7980273357 785581.0214449686 781614.7968529282 863146.8726655032 0.8203575932185261 0.9735833224178706 1.1078767224263717 1.029492713312776 1.2667114548008203 1.3729896606711092 0.8645513546528545 0.9101359760697485 0.9055409010974066 1.0 19.71924654303847 IGHPAPNFK ddPTM_BT-474_Trastuzumab_2h_R1 5 IGHPAPNFK 9 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 ;;;; 136.16 0.00020068 24114660000.0 11843810.0 11835620.0 11680970.0 10775890.0 10276050.0 12513240.0 13042260.0 11113210.0 15919400.0 12671440.0 False True 11780044.242930988 12229561.456916621 13325549.043188656 12140116.569123099 11584644.056579754 11648229.171798553 12411356.057528466 11942534.161936928 11996277.179031095 11862737.850634428 0.9930291296373023 1.0309223394212135 1.1233114320633828 1.0233823525379377 0.976557368327936 0.9819174391665072 1.0462471828849103 1.0067266353102655 1.0112570411719521 1.0 23.499933678116776 3.4852306794533128 24.981180807127263 1.0056733939591063 1.0516170681328378 0.25190438748796407 0.03481909629795445 516.0302343679449 1589638.896071645 0.009755148588886294 0.013880080259787124 3056.544193293024 -3.4852306794533128 0.045943674173731575 IGIEIIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IGIEIIKR 8 1 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 148.99 0.00082167 1551400000.0 980190.0 1218100.0 1196100.0 1140700.0 1274700.0 1938600.0 1243200.0 1029800.0 1738200.0 1485400.0 False True 974912.7659493475 1258643.7221429995 1364500.4833124266 1285112.5030413938 1437025.4892611664 1804589.1449735388 1183061.6665148074 1106648.9052184431 1309843.900686699 1390600.5002850802 0.7010732167502352 0.9051080607873873 0.9812311178032059 0.9241421262094608 1.033384849902304 1.2977049444492426 0.8507559620985853 0.7958064915060612 0.9419268153708951 1.0 20.407276582993617 4.733966247076444 2.4673024286243934 0.9666077755419 0.6427026291306878 0.29940514208685154 0.1267163815184124 0.7738601074568598 5.895869857225956 0.035264933792197035 0.5273141873378308 54195.876828287364 -4.733966247076444 -0.32390514641121226 IGKPAPDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGKPAPDFK 9 1 P32119;A6NIW5;P32119-2 P32119 PRDX2 Peroxiredoxin-2 0 ; 104.52 0.0029607 27477000000.0 36911000.0 37772000.0 32663000.0 30798000.0 33134000.0 48506000.0 46642000.0 44127000.0 66401000.0 48393000.0 False True 36712275.27719766 39029218.18634379 37261666.488114566 34697023.64220991 37353418.49939558 45152894.390842035 44385748.2702571 47419980.812365785 50037363.27781472 45304517.30866824 0.8103446953660269 0.8614862381256674 0.8224713274008371 0.7658623400799645 0.8244965561579584 0.9966532494586982 0.9797201450762317 1.0466943172417993 1.1044674184894347 1.0 25.43315157262639 2.668526339561976 2.7742838090915427 1.0336701669679256 0.8144797911983125 0.8865689922017645 0.03746554590153872 0.09090912150264327 1.3775176666721212 0.013850391453058237 0.013225500356793396 466.150698756889 -2.668526339561976 -0.2191903757696131 IGKPHTVPCK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGKPHTVPCK 10 1 P15880;H0YEN5;E9PPT0;E9PMM9;I3L404;E9PM36 P15880 RPS2 40S ribosomal protein S2 0 ; 123.88 0.00027053 4091600000.0 6140400.0 5556200.0 5983200.0 4998600.0 4597400.0 6370100.0 6655200.0 5866500.0 9049800.0 6846600.0 False True 6107340.768662574 5741134.75820617 6825582.553093316 5631422.247481991 5182851.639075299 5929749.980602468 6333262.550667101 6304288.019483396 6819598.051107165 6409644.126330842 0.9528361712896969 0.8957025764693498 1.0648925928748207 0.8785857898643837 0.8086020903694364 0.9251293619006137 0.9880833359608896 0.9835628773187823 1.0639589213841423 1.0 22.611812827661126 1.9525314146076818 1.977082773827442 1.0198447249235467 0.9201198416959148 0.3170352989403292 0.06377640102524955 0.4396859760447484 3.1816068918364495 0.04046404114010861 0.020079156931070714 89.64610289405445 -1.9525314146076818 -0.09972488322763196 IGLDDEEKLDLFR ddPTM_BT-474_Trastuzumab_2h_R1 5 IGLDDEEKLDLFR 13 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;;; 188.4 5.6016e-06 1316288000.0 2236338.0 1913767.0 1647102.0 1644762.0 1604588.0 2301724.0 2350421.0 2050417.0 3257170.0 2242810.0 False True 2224297.8046885114 1977465.5776984163 1878999.644732768 1852988.7005587523 1808922.7706617995 2142611.237555489 2236722.1567498376 2203429.528346557 2454484.097341901 2099671.9456337565 1.059354919378674 0.9417973992606479 0.8949015338515743 0.8825134347353742 0.8615263800725792 1.020450476566601 1.0652722018794771 1.0494160923226905 1.1689845656346327 1.0 21.00173250703538 2.52540844340323 4.477805283688518 1.0698036612052884 0.9246463616029009 0.5319396184104439 0.0635557895154273 0.1692338837815735 7.3381322125345205 0.021973398821125215 0.019982158450762934 335.2806141948842 -2.52540844340323 -0.14515729960238744 IGLEVDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 IGLEVDRR 8 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 ;;; 190.26 0.00030041 840500000.0 563907.0 749024.0 690597.0 662695.0 612800.0 651038.0 685123.0 612435.0 868344.0 683312.0 False True 560870.987367957 773954.8110454298 787827.0548232684 746592.1190523511 690836.4476498332 606033.2754386066 651980.9830659772 658138.0095819167 654352.2564134684 639702.4431471641 0.8767685560314926 1.2098668988002925 1.231552361981566 1.1670928054914385 1.079934045977851 0.9473674548702453 1.019194142605437 1.028818971433116 1.0229009806406728 1.0 19.287041467641757 2.982608377920861 5.890239936247116 1.0087184218470409 1.134590319237143 0.25870306708522905 0.09336950298931239 0.21996985083264753 27.556746023089314 0.028094204983503547 0.031370008865781625 960.745541933171 -2.982608377920861 0.12587189739010207 IGLIHGHQVIPWGDMASLALLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGLIHGHQVIPWGDMASLALLQR 23 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 ; 224.05 7.9227e-33 1268100000.0 398500.0 493560.0 438740.0 453140.0 446700.0 456460.0 448140.0 256090.0 501490.0 427010.0 False True 396354.52027751226 509987.84623668005 500510.778403557 510507.4775385085 503584.59720166604 424905.99459126266 426461.7561389524 275200.73619867046 377904.5091217192 399757.8562183463 0.9914865064240911 1.275741898010696 1.2520348771586864 1.277041763150919 1.2597240788849187 1.0629084281440127 1.0668001879268147 0.6884185811932032 0.9453335393996839 1.0 18.608766860902584 2.185267069276414 2.084729058202056 0.8521119093493423 1.2142594854797704 0.5662964644415327 0.11875516127159182 0.19526199991706286 1.6949179633895353 0.05698756879947071 0.03588927260219023 153.2029293070145 -2.185267069276414 0.36214757613042803 IGLPHSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGLPHSIK 8 0 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23 Q14498-2 RBM39 RNA-binding protein 39 0 136.11 0.00080486 162240000.0 373410.0 467520.0 440560.0 312910.0 271440.0 372140.0 436780.0 310930.0 640660.0 351160.0 False True 371399.6020497515 483081.1205781921 502587.0185838324 352524.37391661515 306006.27504907094 346414.8377233327 415651.282738366 334133.1754705487 482777.92740417697 328748.66815679846 1.1297372066389952 1.4694542286260577 1.5287879990562299 1.0723218314255702 0.9308213376643083 1.053737615624676 1.2643436247781812 1.0163787958258192 1.4685319642843797 1.0 18.326625524134606 3.7242378694882117 24.674769597937313 1.1092471762538274 1.3853392556407833 0.3196789333085751 0.17405913592339542 702.8381258053182 1210826.9888405278 0.0453226176355301 0.07059170204132643 5299.536278276182 -3.7242378694882117 0.2760920793869559 IGLVRPGTALELLEAQAATGFIVDPVSNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 IGLVRPGTALELLEAQAATGFIVDPVSNLR 30 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 140.46 5.0146e-08 289670000.0 215130.0 281270.0 255100.0 265560.0 243620.0 308580.0 290110.0 248690.0 287520.0 291280.0 False True 213971.76398319015 290631.90191869467 291015.8626310508 299179.86877151945 274643.56295113 287248.5909191866 276076.27097217675 267248.51062223205 216664.54857061317 272690.26102264534 0.7846696217926941 1.0657949456235234 1.0672029926543054 1.0971417448116136 1.007163079169602 1.0533877881884908 1.0124170549283027 0.9800442070061263 0.7945445053962541 1.0 18.0569036505784 1.450867315466786 5.4685597079638155 0.8925781820162704 1.0192964554075463 0.1851606673815671 0.09399219001790549 0.25028264657366367 15.577463717262143 0.05754653816297977 0.022820243109246702 28.2401705667565 -1.450867315466786 0.12671827339127595 IGNEESDLEEACILPHS(ph)PINVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGNEESDLEEACILPHSPINVDK 23 0 O95714;Q9BVR0 O95714 HERC2;HERC2P3 E3 ubiquitin-protein ligase HERC2;Putative HERC2-like protein 3 1 IGNEESDLEEACILPHS(1)PINVDK 112.57 0.00054739 40182000.0 56331.0 48536.0 39320.0 39159.0 35595.0 45356.0 40931.0 43354.0 60872.0 48997.0 True False 56027.72015496248 50151.4914193684 44855.91422443323 44116.52538493725 40127.812261905754 42220.64647653967 38951.0111583957 46589.29562715129 45870.91124301044 45869.96951155786 1.2214466403960695 1.0933404132028413 0.9778928284033607 0.9617735929347241 0.8748166325202101 0.9204419999865343 0.8491614791368285 1.0156818529258491 1.0000205304573475 1.0 15.485262328051972 4.507813041379801 1.5927871200356856 0.9410486262992389 1.2621272765053666 0.7479429368877304 0.05119212023321058 0.33326119975233875 1.130267270531638 0.014595936265789183 0.14538944557883096 32196.824578182925 -4.507813041379801 0.3210786502061277 IGNFLNYGSHTGDADGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGNFLNYGSHTGDADGFK 18 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 ; 197.38 1.8494e-15 1465640000.0 1595550.0 1416380.0 1331100.0 1287380.0 1225200.0 1795040.0 1665930.0 1450200.0 2104700.0 1662840.0 False True 1586959.7360822698 1463523.3520802094 1518507.3098713919 1450362.1760019548 1381221.9576706523 1670953.109869649 1585342.6014293851 1558421.287966388 1586024.8865350888 1556716.1275710536 1.0194278250064803 0.9401350227955478 0.9754555008309197 0.9316805744570509 0.8872664278398495 1.0733833100816137 1.0183890134825015 1.0010953573134718 1.0188272983397209 1.0 20.570074457425235 2.733465976346573 24.996791874253546 1.0203003784155564 0.9505092865795712 0.4873621291710214 0.03665848797631579 386.6674592263692 1897173.9963442266 0.011785928615439317 0.011437988870120033 541.3348367742735 -2.733465976346573 -0.0697910918359852 IGPLGLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGPLGLSPK 9 0 P30050 P30050 RPL12 60S ribosomal protein L12 1 IGPLGLS(1)PK;IGPLGLS(1)PK 126.19 0.00050387 1293910000.0 2228220.0 1550960.0 1170360.0 1155100.0 1168730.0 2060680.0 2044270.0 1855900.0 3273860.0 2338390.0 True False 2216223.5110985157 1602582.7660248827 1335136.515048516 1301335.541564928 1317560.8378945675 1918230.0419189455 1945380.8502302319 1994396.6820692467 2467061.070476445 2189151.9482035986 1.0123662329228138 0.732056432784371 0.6098875485295202 0.5944473350206658 0.6018590162166441 0.8762434437193958 0.8886458757815311 0.9110362045475342 1.1269483018302573 1.0 21.061940664232168 2.0377051220762255 1.257396147926163 1.0318090790666188 0.7064571782466711 0.511177473708885 0.12657859083357378 0.3909755623379905 1.1505357806536867 0.09535894024540052 0.04578747916095452 109.06995201681025 -2.0377051220762255 -0.3253519008199477 IGQQVDREPGDVAT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGQQVDREPGDVATPPR 17 1 H3BT22;Q9Y5N6 H3BT22 ORC6 Origin recognition complex subunit 6 1 IGQQVDREPGDVAT(1)PPR;IGQQVDREPGDVAT(1)PPR 127.05 6.7177e-05 779980000.0 467310.0 420730.0 405090.0 415210.0 415430.0 504780.0 537110.0 436100.0 661470.0 606090.0 True False 464794.0548830224 434733.74371334416 462123.15089459944 467775.54342755943 468332.54805347696 469885.74672430806 511127.9373405466 468643.9964709297 498459.58174389077 567408.8173002445 0.8191519777477771 0.7661737541933628 0.8144447826760981 0.8244065463297796 0.8253882100067168 0.8281255637866973 0.9008107060664219 0.8259371059842848 0.8784840251788523 1.0 19.114029044112353 -4.999999999999999 0.12525836410199767 1.5844400475881835 0.7505336344856322 0.8373450735602546 0.024672509839369364 52.76130810537943 0.4227133189611714 7.700823917896905 0.2009453015955256 1.0000000000000021e-05 4.999999999999999 -0.8339064131025513 IGRPGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGRPGYK 7 1 Q15428;K7EMT0 Q15428 SF3A2 Splicing factor 3A subunit 2 0 ; 73.039 0.045578 2116060000.0 1480540.0 1504060.0 1449400.0 1407300.0 1411640.0 1640790.0 1652340.0 1531830.0 2176330.0 1705930.0 False True 1472568.937143458 1554121.72787653 1653462.9215893561 1585464.0357062786 1591403.9865541956 1527366.0493042057 1572410.001648228 1646142.9330751305 1640002.6328279136 1597056.0868798464 0.92205211153254 0.9731165615559584 1.0353192572088756 0.9927416129785304 0.9964609255917285 0.9563634376098878 0.9845678023244824 1.0307358311323835 1.0268910693249174 1.0 20.60698354885012 4.605781162009494 3.4278202820527195 1.002405983755406 0.9211916515080474 0.5406848218311981 0.022734763609574028 0.21107473724135334 4.033092015101074 0.006016066025000385 0.03533552673002636 40344.205007721495 -4.605781162009494 -0.08121433224735863 IGRPSETGIIGIIDPECR ddPTM_BT-474_Trastuzumab_2h_R1 5 IGRPSETGIIGIIDPECR 18 1 Q16531;F5GY55;F5H2L3;F5GWI0;F5GZY8 Q16531 DDB1 DNA damage-binding protein 1 0 ;;;; 150.29 5.1086e-08 2022200000.0 1368390.0 1620910.0 1440180.0 1454048.0 1364839.0 1582812.0 1433190.0 1382213.0 1996450.0 1649620.0 False True 1361022.7402824229 1674861.009489213 1642944.8257310367 1638130.3277130998 1538643.156615455 1473395.931978673 1363861.1243825243 1485360.752795399 1504451.6485594069 1544339.839289264 0.8812974357436719 1.0845158344552046 1.063849279759015 1.0607317677351378 0.9963112505881925 0.9540619846061597 0.8831353628811391 0.9618095156303107 0.9741713645435616 1.0 20.55855882873629 2.886225339160053 3.3675466196867183 0.9471667419269383 1.0298666793398992 0.21751564933912937 0.05930122915659106 0.31850826760049394 6.7340220723306325 0.018553520453012923 0.020080063908836553 769.5296168494616 -2.886225339160053 0.08269993741296089 IGS(ph)DPLAYEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGSDPLAYEPK 11 0 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 IGS(1)DPLAYEPK;IGS(1)DPLAYEPK 167.44 2.0179e-05 506970000.0 1300160.0 1031130.0 966340.0 766830.0 907120.0 1538420.0 1109450.0 1013780.0 1685330.0 1019720.0 True False 1293160.0830213544 1065450.5387187523 1102392.2724221472 863910.5993751487 1022636.3550785196 1432072.6464511454 1055781.6649894246 1089433.4114705324 1270003.003764995 954640.5965737847 1.3546041176779196 1.1160750365558156 1.154772043404235 0.904958999727995 1.0712265524311164 1.5001170614269594 1.1059467497806361 1.141197446851224 1.3303467381578462 1.0 19.864598163467125 IGS(ph)NY(ph)KAYMRT(ph)S(ph)ISGNWK ddPTM_BT-474_Trastuzumab_2h_R1 1 IGSNYKAYMRTSISGNWK 18 2 A0A087WTG8;A0A0A0MR68;O14994 A0A087WTG8 SYN3 Synapsin-3 4 IGS(1)NY(1)KAY(0.621)MRT(0.672)S(0.672)IS(0.035)GNWK 58.159 0.060753 67762000.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3215.6 True False 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3010.377654986335 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 11.55572877058364 IGSGVER ddPTM_BT-474_Trastuzumab_2h_R1 1 IGSGVER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 89.12299999999998 0.042118 594740000.0 352020.0 451550.0 400840.0 437170.0 387560.0 406460.0 464600.0 360190.0 468810.0 435920.0 False True 350124.76343309897 466579.5687822603 457274.7878362618 492515.6771759497 436913.46875190816 378362.3769039225 442125.5230556456 387069.2068077596 353278.0572321548 408099.21239011106 0.8579403066781882 1.1432993610785178 1.12049906971921 1.2068528000616259 1.0706060082621598 0.9271333181163739 1.0833775455391177 0.9484683994875039 0.8656670890470832 1.0 18.63856040071041 2.855585796967439 5.7230012414392055 0.9709764352531184 1.0947238968028843 0.24553541057870265 0.09940076264500021 0.3247736750516406 14.095111422858496 0.03049741885484016 0.03245442918613626 717.110030129357 -2.855585796967439 0.1237474615497659 IGSLEWYYEHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 IGSLEWYYEHVK 12 0 Q9BV36-2;Q9BV36-5;C9JKV5;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 ; 148.18 6.6213e-05 806740000.0 839420.0 896480.0 886050.0 803300.0 708800.0 844630.0 920980.0 808340.0 1254900.0 865030.0 False True 834900.6559883292 926318.7948663954 1010798.1383153375 904997.6976357953 799061.4786132533 786242.7161451564 876428.678914741 868662.4354673501 945646.7097984925 809823.0448105573 1.0309667789012331 1.1438533403097835 1.2481716157531606 1.117525246330206 0.9867112126948407 0.9708821219444095 1.08224714588082 1.0726570959345287 1.1677201777083395 1.0 19.627247172231204 3.4621327239883604 22.470637452830886 1.0508659759085006 1.1482104353330165 0.2668752135083009 0.07209190671895191 94.5485296657258 141744.31259784696 0.02074533503682487 0.028107300768477606 2898.229175197815 -3.4621327239883604 0.09734445942451586 IGSLGLGTGEDDDYVDDFNSTSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGSLGLGTGEDDDYVDDFNSTSHR 24 0 O95684;O95684-2;A0A087WV25;O95684-3 O95684 FGFR1OP FGFR1 oncogene partner 0 ; 172.24 5.6812e-12 264340000.0 62776.0 73630.0 63526.0 76688.0 66925.0 84601.0 77669.0 68955.0 91684.0 78849.0 False True 62438.0209910693 76080.73003972507 72469.90862210955 86396.69293700217 75447.50205444709 78752.73199933273 73911.85374560686 74100.77224639527 69089.70670265757 73816.78931397483 0.8458512158459414 1.0306697263155231 0.9817537351003386 1.1704206284226146 1.0220913528700921 1.0668674800303652 1.0012878429489487 1.003847132001536 0.9359619585835557 1.0 16.171661367992616 4.7394451997288085 24.224447621721037 1.0262171317824655 0.8458511358191028 0.45205958960054726 0.05866528946487174 43.45032617877241 1189593.6306409193 0.013973785771410755 0.0843293927142674 54883.92974395182 -4.7394451997288085 -0.18036599596336278 IGTTPDIILDDLLETDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IGTTPDIILDDLLETDR 17 0 Q10570;A0A087X101 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 ; 116.01 0.00066745 14015300.0 12930.2 12913.3 9847.8 11078.099999999999 11624.9 12850.5 11883.7 12498.400000000001 12925.7 13455.5 False True 12860.58523988028 13343.111384245303 11234.284641387943 12480.586324136822 13105.262108819434 11962.1751818232 11308.840030857473 13431.094073589244 9740.334430506304 12596.758470166886 1.020944020665175 1.0592496010657042 0.891839330570185 0.9907776158203561 1.0403678168361206 0.9496232868283869 0.8977579476212383 1.0662341510634128 0.7732413424909671 1.0 13.620764911634044 7.999999999804334 0.3795739665834098 0.9517015531689124 2.172393707908618 0.09845680787805222 0.08307543898908322 177.26249262329864 2.426901533081319 0.059792971705819264 159.05455014801018 99999999.95494631 -7.999999999804334 1.2206921547397056 IGVDHVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IGVDHVAR 8 0 Q7L5N1;E7EM64;H7C3T0 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 0 159.04 0.00036148 691680000.0 152900.0 202920.0 171800.0 181230.0 174190.0 199560.0 183630.0 170220.0 229920.0 218870.0 False True 152076.80338878688 209674.0695322696 195987.94668763079 204173.69941806962 196372.0639949813 185764.8869137105 174747.115365278 182922.68075964614 173259.29677015642 204901.52921596574 0.7421945749780046 1.0232918726110318 0.9564982137398298 0.9964479045096389 0.9583728571786577 0.9066056638255479 0.85283460808677 0.892734580652378 0.8455734685490879 1.0 17.64457122591168 2.559806890409809 4.951535178819417 0.8870384669061565 0.9444031943205006 0.03469964654371993 0.08116246888116678 0.5262534596380983 22.400631399078772 0.02560685857315518 0.023786005769736364 362.9166475418538 -2.559806890409809 0.05736472741434406 IHAGPITK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHAGPITK 8 0 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 73.665 0.042979 697770000.0 1368000.0 1393700.0 1242500.0 1238600.0 1272800.0 1179900.0 1451900.0 1188200.0 1973200.0 1566700.0 False True 1360634.8399990895 1440088.4619905604 1417433.199996395 1395406.6330034807 1434883.5355233492 1098336.290185844 1381666.0502033853 1276869.517557347 1486931.299525369 1466711.8646806455 0.9276769846648423 0.9818482393637131 0.9664019458280034 0.9513842947655636 0.9782995352231459 0.7488425754468075 0.9420160042846741 0.8705660247968104 1.0137855534761941 1.0 20.484154050952437 IHAYVDYPIYDVLQMVGHANRPLQDDEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHAYVDYPIYDVLQMVGHANRPLQDDEGR 29 1 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 148.72 2.9276e-08 657680000.0 91646.0 109690.0 140330.0 107570.0 78595.0 121140.0 108080.0 54237.0 109370.0 85436.0 False True 91152.58811882784 113340.96534099468 160087.24422977396 121188.35097059932 88603.60738093781 112765.87693288691 102851.75749430523 58284.44034990556 82417.22898291581 79983.40133456049 1.13964380856408 1.417056082260164 2.00150583194317 1.515168759374007 1.1077749370812588 1.4098659853336502 1.2859137743353686 0.7287066988575428 1.0304291591473451 1.0 16.28741301333769 1.922834814358023 4.4784983376853305 0.9030849291434083 1.4407467538190555 0.4731914351159462 0.2410367807862344 0.19777942885776228 7.045678097851569 0.1193551130635255 0.07004567650964212 83.72107850916443 -1.922834814358023 0.5376618246756472 IHCLENVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHCLENVDK 9 0 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;P11277-3;P11277;P11277-2;Q01082-3;O15020;O15020-2;A4QPE4 Q01082;Q01082-3;O15020 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 0 144.65 0.0016721 0.0 350640.0 386930.0 327420.0 309520.0 299800.0 384870.0 397250.0 219150.0 472450.0 327910.0 False True 348752.193199766 399808.73114587547 373517.8900143418 348705.2002641993 337977.75294618186 358264.84278652957 378033.4998576306 235504.08582115182 356021.02800565585 306982.5030621246 1.1360653774107392 1.3023827975790707 1.216739997519508 1.13591229723484 1.100967480474888 1.1670529727683758 1.231449662722723 0.7671580089158777 1.159743713255238 1.0 18.22779690376235 1.763320180448876 24.999999999977334 0.954722134111804 1.1844143103032627 0.4541519368495952 0.1041119391603347 11.381765689147358 11500.27323630971 0.046130134176775146 0.025583080032562995 57.98560335263219 -1.763320180448876 0.22969217619145876 IHDENLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHDENLR 7 0 O95232;J3KPP4;D6RDI2 O95232 LUC7L3 Luc7-like protein 3 0 ; 181.81 0.0006665 3420200000.0 1001790.0 1209270.0 932610.0 1104160.0 1106880.0 912560.0 946630.0 636280.0 1205830.0 964080.0 False True 996396.4739493327 1249519.8209308495 1063913.3816085623 1243946.542787924 1247834.607008238 849476.8751351763 900837.8904222259 683762.4445643723 908669.3537941794 902551.5890095859 1.1039773084248041 1.384430359600839 1.178784010314631 1.3782553351359865 1.382563193287985 0.9411948142126135 0.9981012735357981 0.7575882120097959 1.0067782992785008 1.0 19.783649871900508 2.7246198727155386 20.132938962146795 0.9167833762099414 1.2903055019997867 0.7106754761709676 0.10947013348664433 29.83571496247859 43087.420712019055 0.034699141243319506 0.03298650777393512 530.4199774246558 -2.7246198727155386 0.3735221257898452 IHDPQLLTER ddPTM_BT-474_Trastuzumab_2h_R1 6 IHDPQLLTER 10 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ;;;;; 176.78 2.3983e-06 5405500000.0 2224880.0 2706300.0 2524100.0 2466530.0 2170670.0 2539290.0 2541690.0 1631100.0 3028110.0 2466540.0 False True 2212901.4932874064 2796377.559507102 2879471.3401294984 2778792.445100983 2447091.957930917 2363754.8591457005 2418738.7445013034 1752820.964557974 2281872.865095155 2309123.3054888663 0.9583297210795382 1.2110126613247614 1.246997652002773 1.2033971674425947 1.0597493655337047 1.0236590023265424 1.0474705871063175 0.7590850433978374 0.9881987937461216 1.0 21.13891378334896 2.4763931207309273 1.3732218476511129 0.9014248560904384 1.158638194981016 0.42929155051976187 0.10369614914671924 0.3402220281870774 1.2978077607107925 0.05369573089319166 0.03975515656512861 299.4974442673482 -2.4763931207309273 0.2572133388905776 IHDVLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHDVLCK 7 0 P42704 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 ; 92.925 0.015312 601120000.0 1072720.0 1136820.0 1221100.0 959120.0 1231560.0 2367500.0 1117150.0 677910.0 1698040.0 1312730.0 False True 1066944.5947103957 1174658.3664777984 1393020.2660085307 1080544.4936592118 1388391.8659719808 2203840.2974955384 1063109.1865725678 728499.0865572289 1279580.7945702702 1228950.4475153035 0.8681754393495263 0.9558224002055795 1.133504014604449 0.8792417105537986 1.1297378741177373 1.7932702672847962 0.8650545583200412 0.5927814974396332 1.0411980378519992 1.0 20.2289953153316 2.026076041504091 24.999911921573123 0.8067887735697047 1.126495193277198 0.156422044487862 0.27197768578315423 329.0231696624336 315443.3174102251 0.10554351557075968 0.07794691354468017 106.18814679083451 -2.026076041504091 0.31970641970749336 IHEAIIQSPPIDYFDVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHEAIIQSPPIDYFDVFK 18 0 Q9H993;F5GZY1 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 169.28 1.8621e-11 696610000.0 852290.0 773110.0 683860.0 724790.0 674150.0 868430.0 831310.0 489640.0 1087900.0 833710.0 False True 847701.3653383218 798842.4989951366 780141.543782323 816548.3396856078 759999.0064998942 808397.47816433 791096.3593874063 526179.4231415404 819801.622113139 780501.9140249582 1.086097740576732 1.0234984497034711 0.9995382839732234 1.0461836479999933 0.9737311246050213 1.0357405454594182 1.013573887740792 0.6741551989643355 1.0503518407604113 1.0 19.574042644565594 1.9545386361658217 24.985148819211563 0.8649390852156092 1.0244432366703105 0.19500901509123936 0.09829153168007046 442.6829979583524 243293.76137690997 0.03829812616072797 0.024718137500517143 90.06138805530495 -1.9545386361658217 0.1595041514547012 IHEDIFDIIDR ddPTM_BT-474_Trastuzumab_2h_R1 8 IHEDIFDIIDR 11 0 P23258;K7EIS0;Q9NRH3;K7EKE5 P23258 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma chain;Tubulin gamma-2 chain 0 ;;;;;;; 250.7 8.9128e-17 1002114000.0 867371.0 1046588.0 937585.0 988648.0 905969.0 1046017.0 1003925.0 558312.0 1159702.0 920290.0 False True 862701.1709099769 1081423.0489041943 1069588.8183650873 1113810.735431636 1021338.7820510314 973708.3068491612 955361.3123840699 599976.0764908905 873908.9813106466 861556.3043000908 1.001328835508686 1.255197186192861 1.241461310220459 1.2927892580815958 1.1854579636333162 1.130173735586765 1.108878558041757 0.6963863806652749 1.0143376317356194 1.0 19.716585556760744 1.934170767909421 6.558573689596674 0.8751170031166128 1.1894589576238914 0.5567167361845956 0.11120734747010412 0.1536150174772987 12.470815186497923 0.04725806973637308 0.029238689374765103 85.93513586028554 -1.934170767909421 0.31434195450727864 IHEGCEEPATHNALAK ddPTM_BT-474_Trastuzumab_2h_R1 7 IHEGCEEPATHNALAK 16 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;; 293.78 7.612e-46 21429610000.0 19248470.0 18809200.0 16628010.0 16815650.0 16112830.0 20891710.0 20474990.0 6066790.0 23923380.0 15083940.0 False True 19144838.376226064 19435252.851598475 18969089.27474615 18944509.56585258 18164703.39227428 19447515.261495452 19484536.51164252 6519524.676335402 18027783.555868242 14121270.035189249 1.35574479692821 1.376310544530849 1.3432990961490336 1.3415584801256646 1.2863363810060333 1.3771789090523416 1.3798005748129152 0.46168118448901463 1.276640380854146 1.0 23.7513665113951 1.7725069058926304 24.999999999968825 0.8597544602136363 1.3502067373137472 0.5246979820676995 0.18932574923665807 21.645297668209903 15948.307162963572 0.0805976372062848 0.04471657302801571 59.2252504448441 -1.7725069058926304 0.49045227710011086 IHEKDPNSATATAPPS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHEKDPNSATATAPPSPLK 19 1 Q92766;Q92766-2;Q92766-5;Q92766-3;C9JU34;Q92766-6;C9JPJ6 Q92766 RREB1 Ras-responsive element-binding protein 1 1 IHEKDPNSATATAPPS(1)PLK;IHEKDPNSATATAPPS(1)PLK 110.26 0.00014454 746420000.0 647890.0 827150.0 733540.0 746100.0 727420.0 1148140.0 1126020.0 556200.0 1736190.0 932740.0 True False 644401.8322273465 854681.1877272668 836816.0559560221 840556.1835006437 820052.625243868 1068771.784230846 1071550.110785877 597706.4683263717 1308329.2382540791 873211.7346411098 0.7379674443933072 0.9787788617826362 0.9583197554026844 0.9626029405641375 0.9391223144532176 1.2239549032974362 1.2271366362549907 0.6844920248031586 1.498295529424834 1.0 19.735971992528665 5.794440464067327 0.5485565460006661 1.0692966446750978 1.0672308826513635e-15 0.20634200684673654 0.2033665789724611 21.858218313266384 2.077803358487247 0.09889772609263825 19.251131439393646 622931.7460108915 -5.794440464067327 -1.0692966446750967 IHEKDPNSATATAPPS(ph)PLKR ddPTM_BT-474_Trastuzumab_2h_R1 3 IHEKDPNSATATAPPSPLKR 20 2 Q92766;Q92766-2;Q92766-5;Q92766-3;C9JU34;Q92766-6 Q92766 RREB1 Ras-responsive element-binding protein 1 1 IHEKDPNS(0.029)AT(0.025)AT(0.086)APPS(0.86)PLKR;IHEKDPNSATATAPPS(1)PLKR;IHEKDPNSATAT(0.004)APPS(0.996)PLKR 182.02 2.549e-17 1322670000.0 842840.0 1106290.0 1024640.0 816560.0 827940.0 1352690.0 1187600.0 676020.0 1853320.0 1130630.0 True False 838302.2430883264 1143112.1938835715 1168900.4056694624 919936.412276218 933373.2514151493 1259181.7241897534 1130151.250927432 726468.0451600044 1396594.1192156672 1058472.2254189574 0.7919926692044424 1.079964279110973 1.104327895998212 0.8691171956941004 0.8818117556610499 1.1896218851574991 1.067719325823692 0.6863364268934489 1.319443331319229 1.0 20.013551982480678 IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGR 39 0 Q99436;Q5TBG5;Q99436-2 Q99436 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type 0 243.58 1.3069e-50 1020400000.0 83266.0 122950.0 129710.0 133660.0 120980.0 121320.0 153420.0 84437.0 142920.0 105490.0 False True 82817.70510772221 127042.3164251555 147972.04054046882 150581.34229553136 136386.0858953603 112933.43395656138 145998.4884786853 90738.11770239826 107699.28102988309 98757.53788546713 0.8385962923029638 1.2864062748556095 1.4983366708886325 1.5247579629837094 1.3810195030736026 1.1435424209090204 1.4783528589787778 0.9187968801695998 1.0905423862914245 1.0 16.591603248789312 1.7123055496547435 9.287721504947026 1.0073834302776108 1.3185317026051548 0.3355821878087484 0.1953687243063025 0.1270381722567833 26.080300703160134 0.09552462456305716 0.051293227947747586 51.55912633428753 -1.7123055496547435 0.31114827232754405 IHFPLATYAPVISAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 IHFPLATYAPVISAEK 16 0 P68363;P68363-2;F8VVB9;C9JDS9;P68366-2;P68366;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;; 244.36 4.7319e-20 15900105800.0 2379249.7 2575700.0 2450721.3 2283143.87 2372767.1 2840695.1 2706825.7 2200872.0 3742558.6 2597180.1 False True 2366440.0839746906 2661430.617456471 2795761.556988595 2572189.649845984 2674924.9256925555 2644324.534013991 2575886.199812669 2365112.2444415693 2820255.180745913 2431425.84246025 0.9732725722698566 1.094596664631766 1.1498444691036476 1.0578935227748099 1.100146621369262 1.0875612522643578 1.0594138446789914 0.9727264566902929 1.1599182387122382 1.0 21.213371159935804 1.9973952160517803 22.614109967468206 1.034905934660142 1.080808429855136 0.04700302910454879 0.06178794215226887 69.28151837849097 601490.9509137799 0.022895674212835133 0.016563820203825814 99.40202138276364 -1.9973952160517803 0.04590249519499401 IHFSPSEPKTSAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHFSPSEPKTSAVK 14 1 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 0 72.643 0.042479 0.0 148060.0 146680.0 154770.0 138830.0 137620.0 162930.0 178890.0 128570.0 199170.0 151450.0 False True 147262.86141101245 151562.1551300674 176560.27071504405 156405.8637654395 155145.09126235323 151667.03259596543 170236.40727383678 138164.5462652313 150087.2222412667 141784.33133713162 1.0386398837037507 1.068962654058623 1.2452735013096967 1.1031251640460973 1.0942329790550178 1.069702351209281 1.2006715105144619 0.974469780703107 1.0585600032516473 1.0 17.11333858281662 1.694905364256883 10.247379439631649 1.0134532180523215 1.11695504281753 0.3792838271748128 0.06216644486296551 0.12391081194719336 22.092498677625507 0.029468520823915784 0.015936101300179153 49.53422405756778 -1.694905364256883 0.10350182476520864 IHGSGHVEEPAS(ph)PLAAYQK ddPTM_BT-474_Trastuzumab_2h_R1 4 IHGSGHVEEPASPLAAYQK 19 0 Q12955;A0A087WY90;H0Y951;Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;H0Y3A4;A0A087WTF3;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 1 IHGS(0.003)GHVEEPAS(0.997)PLAAYQK;IHGS(0.458)GHVEEPAS(0.542)PLAAYQK;IHGS(0.008)GHVEEPAS(0.992)PLAAYQK;IHGS(0.017)GHVEEPAS(0.983)PLAAYQK 148.38 1.6055999999999998e-07 2054310000.0 1006516.0 1752470.0 1826765.0 2112150.0 1971275.0 2179060.0 1730660.0 206719.0 1444003.0 898682.0 True False 1001097.0296904406 1810799.904559516 2083957.63347398 2379547.973436383 2222305.186587672 2028426.7111554956 1646941.3640367712 222145.42147781266 1088147.8092988692 841327.3453596301 1.1899019272486813 2.152313144874044 2.476987875133407 2.828325962018068 2.6414275000626963 2.4109839319301254 1.9575512113335352 0.26404160366718543 1.2933703097855858 1.0 19.682307710875886 1.9003492415283294 5.269453843014066 0.8145630780779769 2.3171624397410877 0.6427346699188952 0.4770311009090637 0.13581826566725475 5.59623834211844 0.22248398568737593 0.13248519377770404 79.49672572997676 -1.9003492415283294 1.5025993616631108 IHGVGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHGVGFK 7 0 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 H7C2W9 RPL31 60S ribosomal protein L31 0 ; 118.06 0.0050921 4841400000.0 7681500.0 7662600.0 7287100.0 6767600.0 6240900.0 8116800.0 7814600.0 5492100.0 10080700.0 7442300.0 False True 7640143.657494877 7917645.00886048 8313060.339391334 7624377.466102336 7035641.6222876115 7555704.720891989 7436577.943328993 5901948.390318719 7596446.559459443 6967326.042326402 1.0965675513218585 1.1363965114824404 1.1931493214024458 1.0943046758231718 1.0098051360803546 1.0844482768555965 1.0673503576769472 0.8470894507397057 1.0902958341996833 1.0 22.73217364641558 2.8155021523150667 0.8882034654709771 0.9733184734898309 1.141323012208593 0.36831624956454534 0.07066956357636218 0.5453267071856648 0.9319088036401219 0.042697544676057436 0.04346601581216018 653.8861705837227 -2.8155021523150667 0.16800453871876198 IHIDLPNEQAR ddPTM_BT-474_Trastuzumab_2h_R1 5 IHIDLPNEQAR 11 0 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 ;;;; 185.99 4.2233e-06 1602060000.0 1260515.0 1589383.0 1495815.0 1579850.0 1494796.0 1562898.0 1514173.0 1092325.0 1536965.0 1445536.0 False True 1253728.5272963836 1642284.6523526881 1706412.750142947 1779858.8480143303 1685149.410249971 1454858.5399261585 1440926.667287421 1173839.8382139613 1158200.5700258508 1353280.6548943666 0.9264364511249489 1.2135580645545254 1.2609452030304422 1.3152178312585583 1.2452327639173333 1.0750604722415993 1.0647655843420711 0.8674031022083797 0.8558465428712249 1.0 20.368029638081087 2.135798900520994 1.7641581055642808 0.8966863152670709 1.1994915935254082 0.545762504510269 0.10842958815107209 0.2580016048067383 1.5555371812905656 0.06216355591779364 0.03523327420112655 136.70956471999196 -2.135798900520994 0.30280527825833736 IHIDPEIQDGS(ph)PTTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHIDPEIQDGSPTTSR 16 0 C9J542;P50479-2;P50479 C9J542 PDLIM4 PDZ and LIM domain protein 4 1 IHIDPEIQDGS(0.822)PT(0.147)T(0.024)S(0.007)R 112.8 0.00045791 1003800000.0 505490.0 567530.0 542400.0 593260.0 509790.0 560880.0 602910.0 152090.0 596100.0 437760.0 True False 502768.4980052186 586419.892970871 618765.2053746849 668366.6551716818 574708.7347379382 522107.6857695032 573744.939960136 163439.7280973714 449199.1423307675 409821.782014808 1.2267978913503728 1.4309144089117303 1.5098397218728778 1.6308714775622442 1.402338186888203 1.2739871541299335 1.3999864456677538 0.39880683572711095 1.096084107883111 1.0 18.644637140019782 1.763851802811235 24.999999999999996 0.778292024644169 1.4181602345358784 0.6313341134503142 0.2014832907753772 8.346844490632188 8256.323850519671 0.08947790100734779 0.04962326736083601 58.05662732331646 -1.763851802811235 0.6398682098917093 IHIPEPDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 IHIPEPDLR 9 0 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 0 ;;; 108.98 0.0025238000000000005 752440000.0 701860.0 914700.0 809990.0 824590.0 818040.0 817600.0 793740.0 514130.0 986090.0 803530.0 False True 698081.2637439767 945145.2365521725 924029.5514407103 928983.0094528832 922212.5450970454 761081.2364233797 755343.7638187433 552496.9912992405 743081.3324290336 752248.0274633559 0.9279934785578181 1.2564276701918147 1.2283575598817005 1.2349424332629926 1.2259421247096176 1.0117424155830759 1.0041153133572533 0.7344612031251277 0.9878142651098293 1.0 19.520848892981046 2.398511182761767 2.117530037001028 0.8847859548147499 1.1842452968674664 0.484144448423362 0.11641539007088002 0.22587924191000075 2.071643720150653 0.04834967763680304 0.03730281226976806 250.32901054224487 -2.398511182761767 0.2994593420527165 IHIVMK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHIVMK 6 0 B8ZZF8;Q9Y4Y9 B8ZZF8 LSM5 U6 snRNA-associated Sm-like protein LSm5 0 ; 72.054 0.086609 1020090000.0 1901460.0 2337200.0 1990570.0 2139200.0 2124700.0 2168900.0 1886400.0 1348530.0 2538800.0 2053280.0 False True 1891222.750632066 2414992.289132765 2270824.9536553933 2410022.500662884 2395267.950916452 2018969.0480414247 1795147.6252521945 1449164.1562965875 1913146.7581770732 1922237.9124985521 0.9838650763962031 1.2563441150703993 1.1813443793248999 1.253758697085681 1.2460829824145174 1.050322145304657 0.9338842052692823 0.7538942744152535 0.9952705363564169 1.0 20.87435547668459 2.393823440857444 2.7316882180987534 0.8824563741186007 1.190685505034569 0.5983797414746406 0.09988736619700159 0.15793922758399428 2.406069067071592 0.03800785318616425 0.030603521871704967 247.641508510349 -2.393823440857444 0.3082291309159684 IHLDDANESDHFENIQSTNWQTMR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHLDDANESDHFENIQSTNWQTMR 24 0 E1CEI4;P48506;A0A2R8YEL6;B4E2I4;A0A2R8Y648 E1CEI4 GCLC Glutamate--cysteine ligase catalytic subunit 0 108.07 0.0013847999999999998 192990000.0 33071.0 38943.0 51136.0 47610.0 36569.0 38919.0 41159.0 5902.8 41831.0 35520.0 False True 32892.94941053352 40239.19421345937 58335.50431792011 53637.42111843671 41225.84538855545 36228.62113547154 39167.98192735113 6343.296909811062 31522.310556682354 33253.08318979805 0.9891699131413166 1.2100891211737212 1.7542885868645488 1.6130059523290312 1.2397600894103984 1.0894815656247592 1.177875197430347 0.1907581583820524 0.9479515140524866 1.0 15.021200491483992 1.9260385002752138 7.362973886907514 0.633254860721733 1.3246222089576862 0.4453738416613098 0.29758634894412256 0.22702557483042193 19.867806026088875 0.1318215433864144 0.08218791961996277 84.34095228392212 -1.9260385002752138 0.6913673482359532 IHLDEK ddPTM_BT-474_Trastuzumab_2h_R1 8 IHLDEK 6 0 P37837 P37837 TALDO1 Transaldolase 0 ;;;;;;; 166.13 0.0070625 10405950000.0 22960280.0 21709060.0 19540380.0 17917150.0 17894190.0 23896300.0 24310850.0 13895610.0 30906700.0 21369800.0 False True 22836664.40360692 22431632.9386961 22291495.655972328 20185459.35291321 20172909.02932632 22244405.026839573 23134841.309034336 14932570.978677854 23290157.913562078 20005961.068393733 1.1414929942898495 1.1212474552964389 1.1142426789577922 1.0089722400191539 1.0083449108174232 1.1118888490682024 1.1563973972529489 0.7464060800492591 1.1641609135367588 1.0 24.253926600333255 4.08480978404264 0.3953534212937552 0.9752030367914186 1.2167114295155677 0.10150602222618865 0.1134739355889585 6.3222655688734255 1.1448859047596929 0.10472614453230181 0.6935828469014834 12156.534418877505 -4.08480978404264 0.24150839272414903 IHLFDIDVPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHLFDIDVPGK 11 0 Q9NQR4;H7C579 Q9NQR4 NIT2 Omega-amidase NIT2 0 ; 140.07 3.8769e-05 926070000.0 858570.0 861890.0 809990.0 723950.0 779970.0 994280.0 919460.0 537940.0 1202910.0 921660.0 False True 853947.5545160937 890577.4876264926 924029.5514407103 815601.995771735 879294.5562556153 925547.7638833643 874982.2071217046 578083.8144039714 906468.9486681843 862838.8697271756 0.9896952773883573 1.0321480856652736 1.0709178548398994 0.9452541191492954 1.0190715637713945 1.0726774098343725 1.0140737023105701 0.6699788740240203 1.0505657318785422 1.0 19.718731643864615 1.9501705925137152 24.999464671027923 0.863140864073331 1.0226433119668903 0.17217297678691368 0.10157837331717451 394.6804223721454 198010.84802879664 0.03982256652647592 0.025702134307938808 89.16010936370327 -1.9501705925137152 0.15950244789355927 IHLGSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHLGSSPK 8 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 IHLGS(0.001)S(0.999)PK;IHLGS(0.001)S(0.999)PK 144.28 0.00037871 998230000.0 2635300.0 2116200.0 1879270.0 1886040.0 1839660.0 2695000.0 2714000.0 1281170.0 3852000.0 2413700.0 True False 2621111.837609356 2186636.4377300846 2143854.881092335 2124812.4706199644 2073929.7964808939 2508700.9933476145 2582713.451513177 1376777.41104944 2902726.214155544 2259655.5995274642 1.1599607648871264 0.9676857120117556 0.9487529345359774 0.9403258049874069 0.917807915911872 1.1102138723583497 1.1429677390011423 0.6092863936156243 1.2845878879783972 1.0 21.107671473506155 4.738670568393084 22.026026292464053 0.9682250947409463 1.1599606155366629 0.06821547010200457 0.16862015775486308 4.088288358252515 812581.559106361 0.03944890507400774 0.22790407569271645 54786.12302468378 -4.738670568393084 0.19173552079571654 IHNADVTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHNADVTLR 9 0 Q9Y295 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 0 ; 111.61 0.0020974 500770000.0 182193.0 256966.0 206343.0 197797.0 225917.0 246970.0 229165.0 186711.0 258820.0 218135.0 False True 181212.09313154526 265518.9579707724 235394.3008344921 222838.07991941657 254686.19083503165 229897.54520484604 218079.41345468603 200644.32291924744 195037.27901031577 204213.43754523087 0.8873661562619204 1.3002031656803341 1.15268761773992 1.0912018454714105 1.2471568663478458 1.1257708991550883 1.0678994295190982 0.9825226259893259 0.955065843632926 1.0 17.63971827523641 1.9660079708898546 2.235847282174759 0.9748137428510686 1.1461115896799259 0.3103718525644942 0.10261534067155387 0.33793526026291687 3.1210166205453365 0.054637902252146424 0.028461398545025027 92.47151456826036 -1.9660079708898546 0.1712978468288573 IHNAENIQPGEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 IHNAENIQPGEQK 13 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 118.24 0.00044319 1664520000.0 4148280.0 3693410.0 3430810.0 3306810.0 3258070.0 4048660.0 3998540.0 2945060.0 5124850.0 3798060.0 False True 4125946.12139724 3816342.9191365093 3913838.2268648976 3725451.8069451307 3672965.902406156 3768785.663720499 3805115.3442938467 3164835.3319116645 3861899.386971714 3555664.5591172394 1.1603867723735963 1.0733135411637333 1.1007332558492473 1.0477511995310502 1.0329899914175364 1.0599384731208084 1.0701558825443698 0.8900826496123116 1.086125904950523 1.0 21.761687796268934 5.918654320923589 0.29404892839040503 0.9843333629835774 1.4332152340611437 0.3962104860349538 0.052376439382806096 14.952974733621451 0.6151242164369067 0.058410530425197275 2.740912707230605 829190.506045775 -5.918654320923589 0.4488818710775663 IHNAENIQPGEQKYEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHNAENIQPGEQKYEYK 17 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 228.76 7.9788e-16 188750000.0 449040.0 432710.0 387290.0 445450.0 414150.0 497770.0 548640.0 319490.0 864350.0 538300.0 False True 446622.4185330338 447112.49077128136 441817.0656149733 501843.924326983 466889.54764063144 463360.3315245427 522100.18719166884 343331.9661373476 651342.5241966104 503945.23313818325 0.8862518963654303 0.8872243675905191 0.876716429806621 0.9958302833859248 0.9264688242672771 0.9194656503427784 1.0360256489389343 0.6812882503111305 1.292486725473223 1.0 18.942907430040677 1.227965015386941 24.999962748642595 1.1462432703755683 0.9002965650084239 0.4441574955912905 0.10966529351334527 206.3860872050048 486944.8027861763 0.09673585155942309 0.02520182483350574 16.903047635765923 -1.227965015386941 -0.24594670536714436 IHNANPELTDGQIQAMLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHNANPELTDGQIQAMLR 18 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 278.15 3.6398e-39 1344390000.0 399510.0 449340.0 443030.0 448030.0 448130.0 459990.0 454930.0 246550.0 434500.0 431290.0 False True 397359.08254973416 464296.01026823383 505404.7731142078 504750.5520624493 505196.69922539114 428191.97399998916 432923.29789863364 264948.81295553216 327423.2970017086 403764.70295405353 0.9841352640350826 1.1499172831882445 1.2517309448213962 1.250110642088215 1.2512156103028156 1.0604987777961248 1.0722168003573562 0.6561960741419293 0.8109260037001496 1.0 18.623155270448162 1.9173574166314074 4.527887655074388 0.7932973384192837 1.164050228833526 0.6324456304261122 0.11356282476250602 0.12872039995682158 4.547018875424284 0.05343622098425399 0.03130592718247728 82.6718043926762 -1.9173574166314074 0.3707528904142422 IHPMAYQLQLQAASNFKS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 4 IHPMAYQLQLQAASNFKSPVK 21 1 P67870;Q5SRQ6 P67870 CSNK2B Casein kinase II subunit beta 1 IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK 303.71 1.4656e-55 22345900000.0 5351610.0 3821410.0 3549040.0 3400930.0 2964250.0 5164110.0 4727900.0 4356640.0 8983500.0 5271860.0 True False 5322797.526379765 3948603.3217588766 4048713.9831913183 3831487.389294791 3341729.6670137374 4807127.230707363 4499193.414668077 4681754.599369667 6769636.797732693 4935405.381333576 1.0784924672067189 0.8000565336928698 0.8203407157807434 0.7763267843784497 0.6770932494527496 0.9740085888159503 0.9116157776389927 0.9486058869807831 1.3716475698909047 1.0 22.234737158082904 1.4398363485427423 4.369686824547691 1.1869942405995353 0.8568328118836904 0.4676154657954381 0.13469302077422027 0.16255321731527111 5.726595258499616 0.09053996083950766 0.033505781766899154 27.53191046523855 -1.4398363485427423 -0.33016142871584486 IHPQTIIAGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHPQTIIAGWR 11 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 178.81 7.3775e-06 497180000.0 191510.0 226250.0 227750.0 154212.0 112963.0 150254.0 179290.0 131457.0 301500.0 189555.0 False True 190478.93143876124 233780.59447898678 259815.22036151233 173735.22338828736 127348.16846584217 139867.29463987102 170617.05774568827 141266.98886512048 227199.36489301544 177457.4376137996 1.0733781237915783 1.3173896660660862 1.4640987938017447 0.9790247493958925 0.7176265485304135 0.7881737532143569 0.9614534056160665 0.7960612458101625 1.280303423446636 1.0 17.437113516481084 3.5897039272323132 5.901017170721889 0.8982810875798665 1.2853978632283853 0.4690699843896945 0.1714957906346227 0.18199807512506894 8.280810955425425 0.04520951656793115 0.07040281285422922 3887.8001056676626 -3.5897039272323132 0.3871167756485189 IHPTSVISGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHPTSVISGYR 11 0 P17987;E7ERF2;F5H136;F5H676 P17987 TCP1 T-complex protein 1 subunit alpha 0 ; 161.19 2.6596e-05 3073400000.0 528030.0 892140.0 1000600.0 961220.0 760740.0 796960.0 944140.0 765890.0 878180.0 963800.0 False True 525187.1451496477 921834.3405899821 1141475.7826288885 1082910.3534438934 857615.7297407545 741868.0310420464 898468.3412349503 823044.6009106177 661764.3060091157 902289.4588493052 0.5820606015052219 1.0216614319817086 1.2650882390719924 1.200180654692492 0.9504884727728912 0.8222062485226801 0.995765086717041 0.9121735744982006 0.7334279476711025 1.0 19.783230805761235 3.0090736736011 24.67463588764148 0.8968747258138758 1.040274482711371 0.0868129532545886 0.18421618460332412 397.39878138545504 1080661.9465086507 0.05513292891309197 0.06580837589281299 1021.112690302746 -3.0090736736011 0.14339975689749518 IHQDS(ph)ES(ph)GDELSSSSTEQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHQDSESGDELSSSSTEQIR 20 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 IHQDS(1)ES(1)GDELSSSSTEQIR 120.41 5.3523e-05 205210000.0 232830.0 260690.0 230520.0 258470.0 238100.0 288910.0 281380.0 171140.0 271710.0 244420.0 True False 231576.46914984463 269366.9090595672 262975.2122842411 291192.27549847396 268420.6236707332 268938.33172098716 267768.5744240157 183911.33583131112 204750.71122746673 228820.90634150984 1.0120424433780635 1.1771953593153914 1.1492621740242421 1.2725772314872152 1.173059874477211 1.1753223777533814 1.1702102692678675 0.8037348456125236 0.8948077101044303 1.0 17.803859345160273 1.7587204664901317 12.810692475811322 0.8879546775356475 1.1668013483355475 0.7213629158560435 0.07442123394759015 0.1242685638477701 77.50246039414353 0.03377417027169863 0.018598984095153887 57.374705122117504 -1.7587204664901317 0.2788466707999 IHQDS(ph)ESGDELSSSSTEQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHQDSESGDELSSSSTEQIR 20 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 IHQDS(0.792)ES(0.208)GDELSSSSTEQIR 163.46 1.2613e-11 390600000.0 161870.0 183370.0 184580.0 200030.0 173790.0 186740.0 176480.0 115610.0 188980.0 219440.0 True False 160998.50990544786 189473.35960049412 210567.25960187908 225353.77749046194 195921.126365967 173831.10333867653 167942.98818093058 124237.40525568495 142408.41120226242 205435.15132796383 0.7836950437387623 0.9223025289280327 1.0249816462311367 1.0969582178791755 0.953688427221453 0.8461604657966567 0.8174987926619264 0.6047524216405791 0.6932037204038012 1.0 17.64832353198216 2.380080633052833 2.114813023519844 0.7260956218962107 0.9644402925398697 0.2921285953863699 0.12318484514612352 0.3082371635321141 2.8228036282172715 0.053046575134798955 0.0402783698189302 239.9278338399113 -2.380080633052833 0.23834467064365905 IHQDSES(ph)GDELSSSSTEQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHQDSESGDELSSSSTEQIR 20 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 IHQDS(0.066)ES(0.934)GDELSSSSTEQIR 121.58 2.0625e-05 438600000.0 88185.0 100620.0 92795.0 94322.0 84378.0 93632.0 84369.0 50848.0 94108.0 78840.0 True False 87710.2217582745 103969.07587392553 105859.72941140101 106263.1555289474 95123.03815241139 87159.44022602001 80287.74914912148 54642.53596091225 70916.34438259347 73808.36370168008 1.1883507147344872 1.4086354263881196 1.434251134996932 1.4397169941125327 1.2887839992887709 1.1808883960400822 1.0877866019849713 0.7403298653492361 0.9608171869142687 1.0 16.17149668617737 2.2966632733814616 1.6474130470650137 0.8768268063345419 1.366828624493935 0.7872497579046813 0.1008472572546902 0.15044125709425787 0.8204186775706769 0.052435521765689476 0.034150575702124146 197.99912607359298 -2.2966632733814616 0.49000181815939303 IHQESELHSYLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHQESELHSYLSR 13 0 Q9UNE7;Q9UNE7-2;H3BTA3;H3BS86;H3BUD0 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 ; 222.75 9.7913e-12 835840000.0 285150.0 360830.0 339240.0 353540.0 324960.0 340480.0 366260.0 131808.0 333770.0 276890.0 False True 283614.78408314305 372840.00842365925 387002.04327306076 398298.1277507268 366341.72981117794 316943.4190037092 348542.60455092747 141644.18226746234 251516.8557888615 259218.64314254437 1.0941141448965275 1.4383225060654086 1.4929560566376712 1.5365334951302196 1.4132537898122033 1.222687593613481 1.3445892638179726 0.5464274503958891 0.9702884512459713 1.0 17.983809955784626 1.7578516828468376 24.999999999866848 0.8041985612030018 1.3742743061963416 0.6710781918486173 0.167557280453809 4.3038223502324255 5582.770819992705 0.07612529407150737 0.042215968879210995 57.260044717080255 -1.7578516828468376 0.5700757449933398 IHQETFGK ddPTM_BT-474_Trastuzumab_2h_R1 6 IHQETFGK 8 0 Q15393;Q15393-2;J3QL37 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;;;;; 133.23 0.00092812 4744950000.0 6021920.0 6498230.0 5836670.0 5583850.0 5831590.0 6786440.0 6644220.0 4168460.0 8360020.0 6116250.0 False True 5989498.651818207 6714519.657287008 6658422.402754905 6290764.837474955 6574208.419958045 6317309.37636141 6322813.695214781 4479531.652210985 6299805.0895287115 5725905.68861493 1.0460351562770918 1.1726563486083577 1.162859251418363 1.0986497472326797 1.1481517121439553 1.1032856145225014 1.1042469155205803 0.7823271803302375 1.1002285807911385 1.0 22.449072477229013 1.9191011701865426 11.34491688810058 0.9380336461275904 1.1243675643016227 0.4380923279851332 0.08124839164932213 0.573701119627663 78.91728568059123 0.031801189069323506 0.02032178672132114 83.0044106228424 -1.9191011701865426 0.18633391817403222 IHQIGPGMVQQIQSVCMECQGHGER ddPTM_BT-474_Trastuzumab_2h_R1 1 IHQIGPGMVQQIQSVCMECQGHGER 25 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 267.57 7.7271e-46 901020000.0 46153.0 59461.0 69266.0 68686.0 51788.0 81194.0 55758.0 27451.0 64815.0 49045.0 False True 45904.517376080345 61440.123440066425 79018.05072913511 77381.64055746578 58382.89482847517 75581.24989011727 53060.7725237553 29499.53301335354 48842.211726503505 45914.906110462995 0.9997737393961417 1.338130220548694 1.7209672723501146 1.6853272088001114 1.271545556208183 1.6461157452501893 1.1556328220752676 0.6424827035991967 1.0637550169219108 1.0 15.486674975029707 2.0042865165217596 6.081265316892263 0.8690049828985157 1.4521759390286713 0.5320328350036783 0.22834231395902202 0.10815393024032116 16.535394484648123 0.09319066213341093 0.06401330012506293 100.99189388257172 -2.0042865165217596 0.5831709561301556 IHQLEDLEATFADLCDGDDEETVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHQLEDLEATFADLCDGDDEETVQR 25 0 Q49AR2;Q49AR2-2 Q49AR2 C5orf22 UPF0489 protein C5orf22 0 ; 190.93 7.7441e-18 190532000.0 122480.0 204168.0 163628.0 172239.0 203548.0 182564.0 189170.0 120791.0 129348.0 180934.0 False True 121820.5812888074 210963.60845783752 186665.40011992783 194044.4397399375 229468.6312764823 169943.78038942997 180019.12440042305 129805.03778426988 97471.9185744006 169386.63721460933 0.7191864912842166 1.2454560284501723 1.1020078277097305 1.1455711201946068 1.3547032696903378 1.0032891802091493 1.0627705193317143 0.7663239551760486 0.5754404253914417 1.0 17.369960540460962 1.7723466881382794 3.3574304077316213 0.7473531954431725 1.111154918616372 0.3694258936927455 0.183717191996149 0.20813946835039973 4.609902557051001 0.09670522910851154 0.047987465040991856 59.203405390550074 -1.7723466881382794 0.3638017231731996 IHRAS(ph)DPGLPAEEPK ddPTM_BT-474_Trastuzumab_2h_R1 7 IHRASDPGLPAEEPK 15 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK 130.0 3.7711e-05 12487770000.0 15066500.0 12445570.0 11211120.0 10872210.0 11608440.0 15971350.0 14828490.0 7724040.0 23393010.0 13811290.0 True False 14985383.63804552 12859813.273944054 12789548.247198071 12248630.671247186 13086706.025385505 14867288.167013898 14111179.288367223 8300447.086680393 17628116.135774348 12929841.64775973 1.158976578854076 0.9945839728185836 0.9891496427888608 0.9473148244912518 1.0121319643271078 1.149843019894204 1.091365205606534 0.6419604595945347 1.363366746168052 1.0 23.624201270729333 IHRAS(ph)DPGLPAEEPKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHRASDPGLPAEEPKEK 17 2 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 IHRAS(1)DPGLPAEEPKEK 151.3 1.3315999999999998e-07 507100000.0 687810.0 740110.0 686960.0 855050.0 806830.0 1116300.0 1216200.0 477850.0 2287000.0 1158900.0 True False 684106.9073828754 764744.1139440566 783677.9968366404 963299.2423297475 909575.0180439224 1039132.8084875493 1157367.7596648221 513509.59347313433 1723399.4942299398 1084938.0098157914 0.6305493043782548 0.7048735568531702 0.7223251372395911 0.8878841312724434 0.8383658880182072 0.957780812439211 1.0667593440304746 0.47330777318818584 1.5884773863923811 1.0 20.049181182974333 5.79852516207823 0.2236079817188071 1.0600443999110827 1.4192552397820766e-09 0.2412539527736598 0.25271634420089784 33.035074622669086 0.9842587457627785 0.40765590419390896 10.469927023660052 628818.2854272184 -5.79852516207823 -1.0600443984918275 IHS(ph)PIIR ddPTM_BT-474_Trastuzumab_2h_R1 3 IHSPIIR 7 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR 120.33 0.0029506 1672850000.0 443500.0 413558.0 375140.0 403129.0 356828.0 455225.0 454639.0 241020.0 529495.0 384160.0 True False 441112.24527748267 427323.0280289096 427956.45122466655 454165.0900662523 402267.93071474414 423756.3672343851 432646.37468036107 259006.13627476132 399008.05211949383 359642.5799040774 1.2265295321681169 1.1881880842443175 1.1899493417570566 1.2628234681983028 1.1185214243041957 1.178270846982045 1.2029898539704476 0.720176505084138 1.1094572067242867 1.0 18.456204313364303 1.7672868793169214 24.999999999999975 0.9170717363339732 1.1938297929565365 0.5816184790318408 0.09722686709825999 12.410556357109225 10806.93131024928 0.04157949585995303 0.023061131646936038 58.51765030573828 -1.7672868793169214 0.27675805662256325 IHS(ph)PIPDMSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHSPIPDMSK 10 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 IHS(1)PIPDMSK;IHS(1)PIPDMSK 91.858 0.006353 358580000.0 1324380.0 1142970.0 1119870.0 912920.0 849820.0 1283570.0 1143940.0 682410.0 1794950.0 1036040.0 True False 1317249.6852324496 1181013.0655100439 1277537.9619154653 1028495.5783962039 958039.5397222289 1194839.8270987743 1088603.2519248282 733334.8994077672 1352608.6235977383 969919.0402015309 1.3581027185101449 1.2176408716181626 1.3171593802819017 1.0603932243483971 0.9877520700317073 1.2318964548324662 1.1223650704894266 0.7560784653277804 1.3945582750047796 1.0 19.887504804031085 3.7334129357498544 23.26944177899144 1.0558662470821747 1.2896349882322304 0.2717739403082048 0.1607493030949902 197.76537603600792 893978.6180966616 0.04276319689987258 0.0686439118847892 5412.687273239225 -3.7334129357498544 0.23376874115005575 IHSEIVK ddPTM_BT-474_Trastuzumab_2h_R1 4 IHSEIVK 7 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;;; 131.04 0.003505 3080080000.0 5982880.0 7097560.0 6159230.0 6451450.0 5346390.0 6297840.0 6530890.0 4711650.0 8532500.0 6351360.0 False True 5950668.838840457 7333797.994034381 7026396.047013127 7268202.908517929 6027221.075963769 5862485.144320725 6214965.900277411 5063257.2482739175 6429779.704642306 5946010.767127124 1.000783394429604 1.2333980346251174 1.1816991798701373 1.2223662541448164 1.0136579484997945 0.9859526620321352 1.0452328701853724 0.8515385266818618 1.0813602525225363 1.0 22.503490645026314 3.1315241223062134 5.401168472117205 0.9794827783245486 1.165782614130669 0.4842571411093558 0.08190795449550337 0.1588660906747118 6.984167406064591 0.023576107415036154 0.028467987613403717 1353.7052783327056 -3.1315241223062134 0.18629983580612053 IHSEVVEDTEAVSAVQQLLDDER ddPTM_BT-474_Trastuzumab_2h_R1 4 IHSEVVEDTEAVSAVQQLLDDER 23 0 Q96GA7;H0YID3 Q96GA7 SDSL Serine dehydratase-like 0 ;;; 242.8 2.3333e-37 1236160000.0 662201.0 835369.0 717814.0 780037.0 772305.0 786784.0 754400.0 478105.0 802188.0 711996.0 False True 658635.7833934478 863173.7521737748 818875.9718488645 878789.6042210044 870653.4639396284 732395.4739703183 717906.7899121379 513783.6228679977 604499.5161684856 666555.8057095566 0.9881179906494433 1.2949759716741438 1.2285182498368028 1.318403645566514 1.3061974053512406 1.098775927982016 1.077039287277556 0.7708036123413087 0.9069000839696966 1.0 19.34636614082392 2.1362488646407325 2.1190270720175954 0.8744463826712086 1.2303785698126875 0.6169826489044464 0.1095693216318892 0.18286651854071276 1.6145871203676365 0.05423495951569621 0.032704082607187164 136.85128025970533 -2.1362488646407325 0.3559321871414789 IHTDFEK ddPTM_BT-474_Trastuzumab_2h_R1 8 IHTDFEK 7 0 J3KQ32;Q9NTK5;Q9NTK5-2 J3KQ32 OLA1 Obg-like ATPase 1 0 ;;;;;;; 181.81 0.0006665 8839520000.0 10018930.0 10165340.0 9241040.0 8798240.0 8482880.0 10805750.0 10762630.0 6937090.0 13653510.0 9774260.0 False True 9964989.194087762 10503687.1968222 10542098.10744041 9912096.28189613 9563124.486031048 10058773.936499432 10242000.469660765 7454770.881629268 10288785.408160646 9150458.358635008 1.089015304319057 1.1478864538966171 1.1520841573462988 1.083234947738152 1.0450978640874988 1.0992644895222405 1.1192882441780307 0.8146882472389405 1.1244010960884196 1.0 23.12541258104516 1.7902665955652197 24.99999999997508 0.9599015595857233 1.1051993776719569 0.35312961953294086 0.07639735137302509 118.5136365768836 57317.87706940047 0.03319645729080959 0.01885180214040043 61.69736204342189 -1.7902665955652197 0.14529781808623354 IHTGERPYACPDCDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHTGERPYACPDCDR 15 1 Q9BWE0;Q9BWE0-4 Q9BWE0 REPIN1 Replication initiator 1 0 112.5 0.00045593 334580000.0 87529.0 118130.0 117970.0 108580.0 103930.0 115520.0 116120.0 68475.0 129410.0 102290.0 False True 87057.75358938606 122061.885638907 134579.15058637818 122326.21686704183 117164.86945862797 107534.37430482978 110502.83197852263 73584.9522090045 97518.63950515789 95761.76462512506 0.9091076582620187 1.274641148445186 1.4053537036750532 1.2774014487505283 1.2235036594959257 1.122936432153172 1.15393479235793 0.7684168362713942 1.0183463085388036 1.0 16.547162116965165 1.8996804963593865 5.832003170932088 0.9112546856197924 1.2129473908288213 0.4454699513511383 0.13621393987844643 0.1942439157894511 9.20539983288662 0.06151310220164145 0.03717959680114442 79.37440748020293 -1.8996804963593865 0.3016927052090289 IHTLELK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHTLELK 7 0 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 ; 127.84 0.003815400000000001 1245320000.0 2589800.0 2238000.0 2173900.0 1965160.0 1865000.0 2483200.0 2520100.0 1527430.0 3368300.0 2304700.0 False True 2575856.8045538296 2312490.4771004296 2479966.2241224656 2213949.054507605 2102496.6952789496 2311542.2288240464 2398193.13528311 1641414.582732383 2538227.597907607 2157612.0728470613 1.1938461213534444 1.0717823218559395 1.1494032014986106 1.026110802015584 0.9744553813627004 1.0713428321588263 1.111503390930971 0.7607551901424366 1.1764059118182015 1.0 21.041004068585345 4.4357710469337475 0.5021320363320452 0.977587404870532 1.2681342116387104 0.17994535509573284 0.10850862472829127 5.001754975718701 1.2094361921779528 0.07029582203730743 0.8298983133990543 27275.394887661983 -4.4357710469337475 0.29054680676817846 IHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVST(ph)PPPFQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPPPFQGR 47 0 B7Z8Z7;A0AV96;A0AV96-2 B7Z8Z7 RBM47 RNA-binding protein 47 1 IHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPT(0.004)VS(0.172)T(0.824)PPPFQGR 178.98 1.6862e-28 123850000.0 38588.0 41534.0 42026.0 42412.0 43720.0 44905.0 42282.0 14866.0 36774.0 28369.0 True False 38380.24649552984 42916.43408216682 47942.89550345964 47781.354851399665 49287.48285125773 41800.823044999874 40236.658127074516 15975.376408018437 27711.540446354084 26558.466132077174 1.4451228585514728 1.6159229177144603 1.8051831481922243 1.7991006940603997 1.8558105956175146 1.5739170642280829 1.5150219115431856 0.6015172837381396 1.0434164499012326 1.0 14.696884206673035 1.8812195636662008 4.816263911788518 0.8601441254067543 1.6874686039094813 0.8339037730608769 0.16001567974340772 0.08238499522791413 2.780566957729947 0.07588918912047009 0.04418349024588502 76.07107677370482 -1.8812195636662008 0.827324478502727 IHVFYIDYGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 IHVFYIDYGNR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 187.99 3.345e-06 3934100000.0 2920800.0 3559100.0 3321000.0 3523200.0 3278300.0 3207300.0 3439300.0 2187300.0 4485600.0 3202100.0 False True 2905074.7373313894 3677562.491978619 3788567.933350529 3969236.758758168 3695772.072993557 2985586.9001720967 3272927.9195981137 2350527.432884348 3380183.983960563 2997739.2365442635 0.9690885390953163 1.2267786494391828 1.263808368374935 1.3240767276788985 1.2328530873999475 0.995946166289575 1.0917987394297453 0.7841000325278429 1.1275777234904443 1.0 21.51544346278131 2.7040284259588905 5.2577928971752295 0.9756331283133355 1.2150634889831946 0.4008734460989195 0.12222027913324572 0.17838334225937286 13.522721750882976 0.04045693098986891 0.03894536971534488 505.8577709239462 -2.7040284259588905 0.23943036066985912 IHVLHHGTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHVLHHGTGK 10 0 Q53GS9;A0A087X1B2;Q53GS9-2 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 0 186.78 7.528100000000002e-07 374310000.0 285980.0 381010.0 356340.0 358700.0 337630.0 403600.0 402620.0 26441.0 417510.0 189730.0 False True 284440.31545536476 393691.68752459105 406509.57463719574 404111.3832216601 380625.1792102048 375700.0819722071 383143.7324422385 28414.16168467747 314620.2548473727 177621.26896397484 1.6013865744482152 2.21646703585053 2.2886311814360702 2.2751294683274783 2.142903163738816 2.11517508102257 2.15708250862653 0.15997049143050787 1.771298317383286 1.0 17.43844481959126 1.7623819897362978 24.999999999994472 0.9112379546372881 2.1318711990640047 0.6210109945153711 0.40579411364505313 7.344333878004014 7713.332916411981 0.17353347721510953 0.09623762666984836 57.86047434863893 -1.7623819897362978 1.2206332444267165 IHVS(ph)DQELQSANASVDDSRLEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHVSDQELQSANASVDDSRLEELK 24 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 IHVS(0.968)DQELQS(0.032)ANASVDDSRLEELK 163.01 1.0452999999999998e-11 200770000.0 26521.0 29745.0 31082.0 28301.0 33713.0 34915.0 30852.0 25190.0 42213.0 37078.0 True False 26378.2138827601 30735.044343767793 35458.07543041289 31883.903698233113 38006.150717393684 32501.408231069378 29359.570893914737 27069.80571222819 31810.17177522011 34711.65029592715 0.7599239349866104 0.8854388679807036 1.0215035911033397 0.918536094550773 1.0949105096813299 0.9363256415060994 0.8458131677294412 0.7798478459378922 0.9164119684321813 1.0 15.083132336394264 0.9651647849156861 23.263566336794856 1.0000000046907775 0.9034813353945823 0.079981347497744 0.09561636416380193 6672.042735584015 4455713.766960344 0.10034217830701456 0.025085544541451645 9.22921546040693 -0.9651647849156861 -0.09651866929619524 IHVSDQELQS(ph)ANAS(ph)VDDSRLEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHVSDQELQSANASVDDSRLEELK 24 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 IHVSDQELQS(1)ANAS(0.995)VDDS(0.005)RLEELK 121.91 7.048e-05 109320000.0 125650.0 126300.0 143470.0 138490.0 137890.0 203480.0 213060.0 127420.0 231410.0 185600.0 True False 124973.5143610274 130503.81915003786 163669.32893640487 156022.81980030044 155449.47416193777 189413.906540398 202753.47383176052 136928.72742564965 174382.1062351332 173754.84909984557 0.7192519518647407 0.7510801558985317 0.9419554607212993 0.8979480032274916 0.8946482643060575 1.0901215564438964 1.166893901851633 0.7880570132863782 1.0036100122588647 1.0 17.40669371514882 4.360685822247949 0.9914937425324761 0.9815337187837325 0.6419183910090389 0.48286863122950485 0.09934650356575846 1.0847352744593786 1.2873013873532948 0.034430766042777367 0.3458406327744458 22944.881666278663 -4.360685822247949 -0.3396153277746936 IHVSDQELQS(ph)ANASVDDSRLEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 IHVSDQELQSANASVDDSRLEELK 24 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 IHVSDQELQS(0.652)ANAS(0.347)VDDS(0.001)RLEELK 100.14 0.0026892 195550000.0 31705.0 55585.0 47756.0 51444.0 47066.0 54571.0 51766.0 41696.0 49374.0 51883.0 True False 31534.303802756654 57435.11312315794 54479.62969740681 57956.80512532783 53059.57611796195 50798.63521631638 49261.8808146762 44807.56724799788 37206.439277704 48571.78252072894 0.6492309354572027 1.182479006172903 1.121631261404841 1.19321964559554 1.0923950772306483 1.0458466331688998 1.014207802516878 0.9225020150099575 0.7660093442489049 1.0 15.567830811898887 1.7643124178965661 2.4042556798156447 0.8747191798385606 1.0641412741010632 0.15872362957181363 0.15349198091219635 0.42301797287371035 4.91559945779362 0.09365342368557618 0.0420635564323997 58.118235162479515 -1.7643124178965661 0.18942209426250256 IHVSDQELQSANAS(ph)VDDSRLEELK ddPTM_BT-474_Trastuzumab_2h_R1 6 IHVSDQELQSANASVDDSRLEELK 24 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 IHVSDQELQSANAS(1)VDDSRLEELK;IHVSDQELQSANAS(0.959)VDDS(0.041)RLEELK;IHVSDQELQSANAS(1)VDDSRLEELK;IHVSDQELQSANAS(1)VDDSRLEELK;IHVSDQELQSANAS(1)VDDSRLEELK;IHVSDQELQSANAS(0.992)VDDS(0.008)RLEELK 245.53 4.9971e-38 1663024000.0 538299.0 768764.0 890953.0 915055.0 886458.0 1127686.0 1162572.0 793068.0 1296441.0 1161555.0 True False 535400.8579946413 794351.845012348 1016391.4380976966 1030900.8691772968 999343.1718517899 1049731.7211073101 1106333.9509036778 852250.7612777046 976950.4869693727 1087423.5654427316 0.4923572331970378 0.7304898203938932 0.9346785101938497 0.948021453588398 0.9190008416314936 0.9653383966163399 1.0173900824498383 0.7837339454113456 0.8984084196957962 1.0 20.052482567405438 4.566289787271721 2.2177795727523697 0.9248388861568518 0.45494195193377823 0.8329595028327121 0.06207754083119049 0.17898369109239276 1.3172734060446059 0.01705801915678594 0.14263003021336776 36837.46932973159 -4.566289787271721 -0.4698969342230736 IHVSDQELQSANASVDDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 IHVSDQELQSANASVDDSR 19 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 260.45 4.1387e-31 2939230000.0 486200.0 801460.0 817020.0 876520.0 906790.0 938970.0 864450.0 580990.0 732740.0 828970.0 False True 483582.3532218982 828136.1116071984 932049.3143348537 987487.3421283807 1022264.331534583 874061.2139976298 822633.2509803114 624346.4240074423 552166.0452129627 776064.4248830758 0.6231214029618175 1.067097118556836 1.2009947685403555 1.27242959536144 1.3172415829891964 1.1262740385623506 1.0600063920005762 0.804503342749551 0.7114951124014655 1.0 19.56581689695397 1.8147278316094584 3.769069193107623 0.8176770845813948 1.1197534210088145 0.2714745764297738 0.19075044247241826 0.27934873710516894 6.924831521280295 0.10175467906055813 0.053885693261647195 65.27213699163676 -1.8147278316094584 0.3020763364274197 IHVSDQELQSANASVDDSRLEELK ddPTM_BT-474_Trastuzumab_2h_R1 3 IHVSDQELQSANASVDDSRLEELK 24 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 323.48 2.1207999999999998e-74 1607860000.0 702500.0 1140120.0 1219770.0 1378250.0 1285500.0 1488460.0 1553850.0 1086430.0 1680450.0 1531040.0 False True 698717.8180550874 1178068.2049829068 1391503.0135691 1552736.3086848457 1449200.80524455 1385566.2636579555 1478684.3392165652 1167504.923379757 1266325.6143763445 1433327.7164107074 0.48747945780661645 0.8219112708801772 0.9708198604110276 1.0833086466597865 1.0110742914213586 0.9666779256370241 1.031644279453019 0.8145415106486497 0.8834864489660716 1.0 20.450937074797547 4.68897367451775 2.3431213669780946 0.9639735061166804 0.40240997699767383 0.8052822197383825 0.07197880838413193 0.23760841127912466 1.6982507772956217 0.020619074299792445 0.26010026715013773 48862.27397651747 -4.68897367451775 -0.5615635291190066 down IHVWNGESGIK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHVWNGESGIK 11 0 Q6UXN9 Q6UXN9 WDR82 WD repeat-containing protein 82 0 ; 129.74 0.00023866 761310000.0 1721050.0 2366200.0 2163900.0 2249500.0 2358600.0 1933270.0 2041360.0 1553140.0 2000570.0 1998960.0 False True 1711784.0580266307 2444957.536601895 2468558.311044024 2534286.469353571 2658953.729482539 1799627.5953280695 1942611.6180475103 1669043.1934851152 1507556.329764577 1871384.6614042448 0.9147152337682123 1.3064965140663567 1.3191079108191863 1.354230651571067 1.4208483078445882 0.9616556298894048 1.0380610988816261 0.8918760679766943 0.8055833527209424 1.0 20.835674703029422 2.663987845609351 7.214875725349221 0.9358895378678574 1.2732718399046719 0.5739567137194053 0.13930836840795233 0.19800541978502206 16.732352926568364 0.04601042283071064 0.043372845560187584 461.3046640681026 -2.663987845609351 0.3373823020368144 IHVYGYSMAYGPAQHAISTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IHVYGYSMAYGPAQHAISTEK 21 0 Q9NRX4 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 ; 242.16 3.4373e-30 2517300000.0 802710.0 845110.0 828840.0 726290.0 727850.0 997730.0 922950.0 435330.0 1117360.0 852250.0 False True 798388.2985494643 873238.9754702175 945533.4675935721 818238.2395318081 820537.383195057 928759.2735037915 878303.3824886107 467816.535160949 842001.5998569147 797858.6753520654 1.0006638057763366 1.0944782609337294 1.1850889096071349 1.0255428245744773 1.0284244673193337 1.1640648929385453 1.1008257597763764 0.5863400995853294 1.0553267462879572 1.0 19.605773699048555 1.7979586668383734 24.999999999876355 0.835504655216653 1.0882642422607562 0.3284109398283148 0.12960296123199774 152.2774348877812 64107.30071427513 0.053593866397557505 0.032166716408501814 62.799858738299406 -1.7979586668383734 0.2527595870441033 IHYFDPQYFEFEFEA ddPTM_BT-474_Trastuzumab_2h_R1 2 IHYFDPQYFEFEFEA 15 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 ; 109.6 0.0022969 155542000.0 241512.0 284460.0 252117.0 290650.0 271770.0 280860.0 281480.0 204078.0 302210.0 277990.0 False True 240211.72622650577 293928.079140299 287612.8821597516 327446.26019898424 306378.2985930082 261444.8092733252 267863.7370419785 219307.33664708654 227734.39490652803 260248.4402007874 0.9230092831341358 1.129413413250535 1.1051473812402177 1.2582064274673548 1.1772531599291454 1.0045970268702276 1.0292616425878125 0.8426845381969864 0.8750653595880381 1.0 17.989529991193656 2.191462069464853 1.8687870346675297 0.8961070609528744 1.1217127704559997 0.4640327374035339 0.09294392648727766 0.27920255696140817 1.932765173872487 0.049213936321285345 0.03004721585851659 155.40395576948455 -2.191462069464853 0.2256057095031253 IHYLDTTTLIEPVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IHYLDTTTLIEPVSR 15 0 P46108-2;P46108;I3L297 P46108-2 CRK Adapter molecule crk 0 85.163 0.0080488 810830000.0 128440.0 167060.0 151350.0 126850.0 122320.0 142110.0 146780.0 129830.0 180330.0 144920.0 False True 127748.49331102552 172620.49111009727 172658.76444221693 142909.19699377666 137896.72695255818 132286.27019095715 139679.69064594852 139518.57386338175 135890.0877982005 135671.08152774585 0.9416044441637322 1.272345507725572 1.2726276115585236 1.0533504663228512 1.016404714989739 0.9750513425656117 1.029546525855496 1.0283589715089656 1.0016142443031226 1.0 17.049753715587173 3.546960526688225 6.443214287656692 1.01280095927756 1.1729716676555575 0.38217821097630866 0.086963703520141 0.22768659566512717 17.04410397944549 0.02269453019148328 0.0351149687145831 3523.3884527715604 -3.546960526688225 0.16017070837799752 IIAEGANGPTTPEADKIFLER ddPTM_BT-474_Trastuzumab_2h_R1 2 IIAEGANGPTTPEADKIFLER 21 1 P00367;P00367-2;P00367-3;P49448 P00367 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial 0 ; 238.87 6.0383e-30 491760000.0 273190.0 285170.0 294530.0 264490.0 308050.0 487780.0 304660.0 265540.0 405750.0 335110.0 False True 271719.1753942623 294661.7110610944 335997.263899347 297974.40688122937 347278.34154460113 454060.91671061254 289922.4318857794 285355.9431847987 305758.349271446 313722.99289789447 0.8661117659383579 0.9392416805005943 1.0709998039853648 0.949800982480775 1.1069585252159944 1.4473306929670693 0.9241351078788757 0.9095793092783345 0.974612496352664 1.0 18.25913174325541 3.2546516970019863 24.735026901053377 1.0543331857248017 0.963478845066921 0.10126123468812465 0.15041436635242272 678.2896039540393 1042652.0273709727 0.04626089281202133 0.06244058388206687 1797.428803889818 -3.2546516970019863 -0.09085434065788067 IIAELEVFER ddPTM_BT-474_Trastuzumab_2h_R1 1 IIAELEVFER 10 0 A0A087WTE6 A0A087WTE6 SRCIN1 0 90.629 0.024894 13172000.0 30395.0 32469.0 26310.0 25165.0 21484.0 29819.0 26505.0 24720.0 30301.0 24922.0 False True 30231.356697201973 33549.711037075016 30014.219309380445 28350.886419774422 24219.860054355464 27757.682716375715 25222.851891067363 26564.73192561654 22833.724562597894 23331.456623202343 1.2957337891684788 1.4379604145122669 1.2864271525821633 1.215135723312724 1.038077495353189 1.1897106625040994 1.0810663173933208 1.1385800875886511 0.9786669101444154 1.0 14.509988759630675 3.6237992604770493 1.9167480262010197 1.0870899175351796 1.364901185578764 0.7452966814878628 0.07052040721277923 0.162994343108802 1.1718809841411932 0.01964754613923866 0.03741959921188879 4205.322051290865 -3.6237992604770493 0.27781126804358447 IIAELNETWEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 IIAELNETWEEK 12 0 O43896;A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;O60333-3 O43896;A0A3B3ITW6;A0A087WWA3;O60333-3 KIF1C;KIF1A;KIF1B;KIF1Bbeta Kinesin-like protein KIF1C;Kinesin-like protein KIF1A;Kinesin-like protein;Kinesin-like protein KIF1B 0 ;; 156.71 0.00015639 50031000.0 100790.0 99539.0 85687.0 92065.0 84190.0 105658.0 103909.0 90206.0 176598.0 106990.0 False True 100247.35783882173 102852.09544240379 97750.98479524453 103720.41956036286 94911.0974667747 98354.11115217888 98882.52469907247 96937.62977678668 133077.78919196283 100161.8066012525 1.0008541303364247 1.0268594280838148 0.9759307276115183 1.035528641903169 0.94757773134643 0.9819522479634367 0.9872278471646094 0.9678103167877016 1.3286280839736644 1.0 16.6119729636966 1.2782880178215716 24.99999995278758 1.1643150988524642 0.9897383275366682 0.4457851908746525 0.0775322616476608 103.04313243390762 64843.760671482785 0.04552783229349081 0.016624998279562753 18.97964206348544 -1.2782880178215716 -0.17457677131579596 IIALDGDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 IIALDGDTK 9 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 87.639 0.030999 84213000.0 483760.0 428730.0 489700.0 404450.0 296850.0 429180.0 497250.0 348500.0 821170.0 460160.0 False True 481155.4899107882 443000.0188772425 558645.5034512957 455653.3285308069 334652.08793220157 399511.7967810497 473196.1178205336 374506.8396471426 618803.6566142539 430792.1948372036 1.1169085598048425 1.0283380808341995 1.2967865020451632 1.0577102695720806 0.7768295060653702 0.9273886610968549 1.0984324309760403 0.8693445334789985 1.4364319131828742 1.0 18.716632585573183 3.4826723009304943 24.999304726826228 0.9961758209749201 1.1424112010323875 0.08934301425851743 0.17627305951305627 511.4066825003962 2303135.2253896673 0.04717011131318678 0.06587582660484355 3038.591376149919 -3.4826723009304943 0.1462353800574674 IIANALSSEPACLAEIEEDKAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIANALSSEPACLAEIEEDKAR 22 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 202.52 1.2742e-22 375350000.0 394180.0 402010.0 374580.0 366610.0 315570.0 484500.0 449410.0 421000.0 604310.0 484360.0 False True 392057.7786775155 415390.65982982307 427317.6080922737 413022.78841062996 355755.96897006856 451007.65539032244 427670.3213870812 452417.1577946829 455385.8978391314 453447.73011854116 0.8646151532725128 0.9160717591887181 0.9423745664810441 0.9108498311429561 0.7845578339912875 0.9946188401305244 0.9431524142270572 0.9977272522158422 1.004274291372202 1.0 18.790576732258067 2.6304000506845635 23.501637893307116 0.9849112637017255 0.8901673763487533 0.596150234429496 0.04270366288779293 13.70239305548706 2965.915914987698 0.01402952851276507 0.013227168329874145 426.9726438780953 -2.6304000506845635 -0.09474388735297223 IIAPPER ddPTM_BT-474_Trastuzumab_2h_R1 8 IIAPPER 7 0 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle 0 ;;;;;;; 133.47 0.0076042 21913510000.0 4230240.0 5019860.0 4643010.0 4792820.0 4568500.0 4584920.0 4623710.0 4315710.0 4752170.0 4515470.0 False True 4207464.85786385 5186943.005530556 5296705.450233616 5399590.52058109 5150271.395379023 4267975.272140757 4400043.483012528 4637770.194931333 3581061.3793155593 4227288.838711637 0.9953104740167628 1.2270140989730418 1.2529793095112725 1.277317620488582 1.2183391274840556 1.0096247110101708 1.0408665342947188 1.0971027464366025 0.8471295707361624 1.0 22.011301260339767 2.7370580047899016 24.785740453485854 1.0160126236905191 1.2038996116481007 0.514640932473583 0.0938420219090117 104.64171084922589 1726063.9924796564 0.029951755831418722 0.029680808291620397 545.8307579055848 -2.7370580047899016 0.18788698795758152 IIAPPERK ddPTM_BT-474_Trastuzumab_2h_R1 6 IIAPPERK 8 1 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle 0 ;;;;; 131.06 0.0016373000000000002 36719000000.0 13523070.0 15789620.0 14094210.0 14435670.0 14235520.0 16633400.0 17682270.0 15734570.0 24405200.0 18282170.0 False True 13450263.293674333 16315167.956673164 16078552.258930545 16263224.341877397 16048329.091462404 15483572.208811969 16826911.047268964 16908763.511927534 18390865.472925458 17115386.25844677 0.7858580046381582 0.9532456767442987 0.9394209406752635 0.9502107692048833 0.9376550928578807 0.9046580646796989 0.9831452701784373 0.9879276609128663 1.0745223739165812 1.0 24.028790515534315 7.71939384549317 0.2623556476011538 1.014538529909493 8.571777805219883e-19 0.596325151508432 0.04483125155953996 33.73750247104019 0.5346622830136466 0.05505839074473259 14.921222460253299 52407548.56932193 -7.71939384549317 -1.014538529909493 IIASILHLGSVAIQAER ddPTM_BT-474_Trastuzumab_2h_R1 1 IIASILHLGSVAIQAER 17 0 Q9ULV0 Q9ULV0 MYO5B Unconventional myosin-Vb 0 95.767 0.0024872 83619000.0 32870.0 51768.0 49042.0 42065.0 40270.0 38813.0 47227.0 40933.0 59520.0 48050.0 False True 32693.031572200318 53491.0665855832 55946.687319294375 47390.42468697837 45398.14580100983 36129.948665974385 44942.449585340066 43987.62831356239 44852.09352713861 44983.40786232534 0.7267797867217949 1.1891288172140293 1.2437182947659917 1.0535089922937777 1.009219798107645 0.8031838934158225 0.9990894803454948 0.9778634035062307 0.9970808273221846 1.0 15.457105340794998 3.1344604220920185 3.9027039869844553 0.9557923040463804 1.0768910451349885 0.08767791191523455 0.1390733216984032 0.46232921481154376 13.189468859519385 0.04122878957327463 0.05056753834480863 1362.88879844649 -3.1344604220920185 0.12109874108860808 IIDDSEITKEDDALWPPPDR ddPTM_BT-474_Trastuzumab_2h_R1 7 IIDDSEITKEDDALWPPPDR 20 1 P61326;Q96A72;F5H6N1;F5H6P7;F5H3U9 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 0 ;;;;;; 210.43 3.3831e-22 4205304000.0 2643244.0 2402400.0 2203018.0 2062899.0 2060790.0 2615483.0 2645271.0 2598505.0 3542900.0 2676981.0 False True 2629013.0679960176 2482362.431718532 2513183.785424278 2324061.8018862 2323219.3912406988 2434680.8163947333 2517309.135813455 2792418.638041031 2669799.767427746 2506133.780701259 1.0490314157372616 0.9905147326268929 1.0028130999140223 0.9273494574722534 0.9270133179365317 0.9714887669378399 1.0044592013396303 1.1142336692256167 1.065306165212254 1.0 21.25703199898904 1.9403758977491707 5.8680232383661215 1.070414935910532 0.9759767895254493 0.4199110140691654 0.04239345158531889 0.1867836859800303 13.309693357716933 0.01918040339941223 0.01178284209764965 87.17177671170235 -1.9403758977491707 -0.09443814638508263 IIDKEGDDYEVIPNSNFYVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IIDKEGDDYEVIPNSNFYVSR 21 1 Q9NTJ3;E9PD53;Q9NTJ3-2;C9JR83;C9J578;C9JVD8;C9J9E4 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 0 89.663 0.0020764 343600000.0 219920.0 208160.0 197770.0 181340.0 177700.0 262060.0 252050.0 224710.0 306210.0 269000.0 False True 218735.97515540876 215088.47976462275 225614.29695234375 204297.6254067911 200329.04168958144 243944.40902288517 239857.37857549638 241479.00125425975 230748.64850378197 251832.18969751347 0.8685782997723285 0.8540944667279223 0.8958914157214725 0.81124508210083 0.7954862399846712 0.9686784255654424 0.9524492435363384 0.95888854218482 0.9162794032841637 1.0 17.942103177465235 2.7257597165061065 24.98271140506885 0.956376787097595 0.8465065263277753 0.7558653964545887 0.032425143551715586 394.5291452711166 769976.747609434 0.010704733235401612 0.01015266828141241 531.8139394592996 -2.7257597165061065 -0.10987026076981965 IIDKNGIHDLDNISFPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIDKNGIHDLDNISFPK 17 1 P49721;A0A087WVV1 P49721 PSMB2 Proteasome subunit beta type-2 0 ; 112.16 0.00028506 1333900000.0 1850300.0 2420600.0 2296300.0 2444300.0 2318400.0 2691700.0 2977700.0 2518600.0 4277500.0 3000900.0 False True 1840338.1903876553 2501168.2077164003 2619599.080202599 2753748.1293802746 2613634.4977666023 2505629.1145802517 2833657.275081356 2706550.721191658 3223367.440563428 2809379.9928002516 0.6550691594244953 0.8902918843752992 0.9324474036677081 0.9801978146201127 0.9303243080198134 0.8918797460655239 1.0086415089248593 0.963397877157195 1.1473590076188072 1.0 21.421820343895824 5.314353263351167 1.0004378925003936 0.9845462782913212 5.174075977573423e-23 0.7154233582911014 0.0630282453178952 2.8705568759835076 1.027035500416393 0.018898637509262392 3.9975755219189497 206230.67505346783 -5.314353263351167 -0.9845462782913212 IIDKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIDKPR 6 1 P49903;P49903-2;P49903-3;Q99611 P49903 SEPHS1;SEPHS2 Selenide, water dikinase 1;Selenide, water dikinase 2 0 ; 110.36 0.026236 1706830000.0 2937400.0 3259300.0 2997200.0 2848100.0 2974400.0 3246400.0 3228900.0 3079600.0 4153800.0 3408300.0 False True 2921585.3647758225 3367783.8302115467 3419179.707870587 3208669.1679777284 3353172.209349974 3021984.0092035965 3072705.771404166 3309415.389891936 3130151.64806835 3190779.376007561 0.9156337748526614 1.055473736459166 1.0715813614631073 1.0056067154328143 1.0508944098622093 0.9470990165997724 0.9629953717605089 1.0371808890255576 0.9809990849273097 1.0 21.605477427347978 2.756663147733307 24.764389126226835 0.990126014101938 1.0239017633342193 0.11518488657410964 0.04586693434154166 1730.061489227192 2366733.478971068 0.014109535589041704 0.014933717212043913 571.03555197828 -2.756663147733307 0.03377574923228133 IIDPLPPIDHSEIDYPPFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IIDPLPPIDHSEIDYPPFEK 20 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 186.05 3.4216999999999996e-17 94597000.0 204690.0 211190.0 199610.0 192140.0 201930.0 228050.0 219890.0 210050.0 288550.0 261880.0 False True 203587.9717831971 218219.331482949 227713.35295877722 216464.90429944193 227644.58856711973 212285.44027195676 209253.08063862676 225724.99761228776 217440.71887190593 245166.594193252 0.8304066565558249 0.8900859115860544 0.9288106877207043 0.8829298502585305 0.9285302074542807 0.8658824052702027 0.853513837507909 0.9207004663708814 0.8869100604322495 1.0 17.903402888722404 -0.24961008647820507 0.7915114781979344 1.0045752133259263 0.888099930287435 0.5476567043911686 0.03066394563533301 7.482872338188803 3.8692096189482124 0.1379330324345572 0.010143614047136873 0.5628464270370948 0.24961008647820507 -0.1164752830384913 IIECTHCGCR ddPTM_BT-474_Trastuzumab_2h_R1 4 IIECTHCGCR 10 0 P41223;C9JCD9 P41223 BUD31 Protein BUD31 homolog 0 ;;; 169.37 4.6515e-06 1747560000.0 854952.0 1118280.0 1029120.0 1058920.0 956604.0 1055349.0 1015716.0 817208.0 1261100.0 1087890.0 False True 850349.0334260963 1155501.273785466 1174011.1507286043 1192979.1634264865 1078421.8491638738 982395.2076543275 966581.9366680767 878192.2106581415 950318.8028742349 1018459.9288105117 0.8349361711454304 1.1345574244977992 1.1527318036947858 1.171356014781849 1.0588750903763031 0.9645889640466216 0.9490623139164397 0.8622746814239488 0.9330939548933842 1.0 19.957957788073124 2.64873297661613 2.5224334740119905 0.9203665442314846 1.086348197675244 0.3147986525444133 0.09380607477542746 0.30337908229309957 3.79113989675552 0.03385712671269997 0.03186726572627627 445.3823235181294 -2.64873297661613 0.16598165344375948 IIEEDDAYDFSTDYV ddPTM_BT-474_Trastuzumab_2h_R1 2 IIEEDDAYDFSTDYV 15 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 0 ; 103.08 0.0034908 17214000.0 95984.0 114427.0 95510.0 109685.0 109406.0 109259.0 102353.0 108179.0 112133.0 108720.0 False True 95467.23280882492 118235.6335224177 108956.97781219787 123571.10975374367 123338.20559983322 101706.18249802127 97401.79436356967 116251.86630183156 84499.32465521892 101781.39652012513 0.9379634793078152 1.1616625195257475 1.0704999296276498 1.2140834570815708 1.2117951788512322 0.9992610238739553 0.9569705043721867 1.142172049868123 0.8302040210119436 1.0 16.635114365901277 2.7073461433725834 23.57859649982977 1.0042615483250177 1.1241255371037444 0.2865588161872966 0.1031088654198974 488.3799407360965 368908.29350235313 0.03311073960024666 0.031221257791970543 509.73698209429864 -2.7073461433725834 0.11986398877872673 IIEESTHCGPQAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIEESTHCGPQAVR 14 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 0 ; 162.93 2.3363000000000003e-07 189910000.0 111125.0 153285.0 143893.0 161833.0 132446.0 136940.0 143745.0 125744.0 145377.0 140755.0 False True 110526.71534714825 158386.99856226082 164151.88365962307 182321.04120688877 149312.21303105413 127473.66012208616 136791.5051907746 135127.6557950943 109550.7863019963 131771.8953935817 0.8387730556430301 1.2019786016523784 1.245727574679923 1.383610979126655 1.1331112190887311 0.9673812442428835 1.0380931744375392 1.0254664349441849 0.8313668553888939 1.0 17.007683176346436 2.8268639303915832 4.627299221878859 0.9838361253793286 1.1838789034668433 0.3112703388891691 0.13870910181486962 0.282268522188211 10.535033953355287 0.04419623693894071 0.0468512652984206 671.2185192603253 -2.8268639303915832 0.2000427780875147 IIEGLQDLDDDVR ddPTM_BT-474_Trastuzumab_2h_R1 4 IIEGLQDLDDDVR 13 0 A0A0A0MTH9;O14981 A0A0A0MTH9 BTAF1 TATA-binding protein-associated factor 172 0 ;;; 196.38 3.3101e-07 120264000.0 174795.0 196156.0 193470.0 208148.0 192434.0 218750.0 208042.0 189255.0 221890.0 214474.0 False True 173853.9231415502 202684.93388119392 220708.89432861414 234499.5154581045 216939.32925432146 203628.3273821118 197978.21366238195 203378.16911741765 167208.18267366925 200786.08569957066 0.8658663897740498 1.0094570705684478 1.099224050110989 1.1679072015427308 1.0804500147431548 1.0141555709532277 0.9860156044807307 1.0129096765287084 0.8327677791570534 1.0 17.61529976968282 1.706145646881573 1.5776264471998034 0.9276285866152089 1.0469379793239943 0.1975854401942282 0.08528625579363557 0.5810154904303217 2.8430786446783616 0.06971572253833236 0.026713906303432247 50.83298896951394 -1.706145646881573 0.11930939270878549 IIEHNIR ddPTM_BT-474_Trastuzumab_2h_R1 3 IIEHNIR 7 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 0 ;; 150.17 0.0019672 349435000.0 214022.0 278264.0 278101.0 276887.0 262658.0 265500.0 262531.0 230874.0 310297.0 269083.0 False True 212869.72933207985 287525.8490258598 317255.2035027749 311940.86581013614 296105.93940406374 247146.6099197742 249831.37256418823 248102.99023441755 233828.46211677638 251909.89256645332 0.845023302433132 1.1413837150123474 1.2593995427118194 1.238303357728783 1.1754438715659077 0.9810913235754624 0.9917489544333128 0.9848878410718567 0.9282226264897195 1.0 17.942548252627777 2.7312115442958556 23.55845909508975 0.9782052715689634 1.145430445537156 0.33689423184861667 0.10769663986171966 296.9084588584555 951776.9627661302 0.035873155493516225 0.034497451708962464 538.5320369169956 -2.7312115442958556 0.1672251739681926 IIEVVDAIMTTAQSHQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIEVVDAIMTTAQSHQR 17 0 Q01813;Q01813-2;Q5VSR5 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 ; 284.74 3.1948e-36 739360000.0 416360.0 473450.0 457700.0 448750.0 440130.0 565130.0 526070.0 447060.0 566650.0 548200.0 False True 414118.36402194464 489208.49704343127 522140.1816002819 505561.70398862625 496177.9466451064 526063.893272927 500621.9843174423 480421.88732468156 427006.7002209862 513213.4066623673 0.8069125994099073 0.9532262616149302 1.0173938849259005 0.9850906025165961 0.9668062840991445 1.025039265233018 0.9754655233447387 0.936105489622841 0.8320256148372703 1.0 18.969199332847023 4.7312584117019 4.7016864844235435 0.9674726492667294 0.7983088893600969 0.46203821145311363 0.05156698978152948 0.15851640311890486 9.693163033679113 0.012651900710084513 0.0873084368556103 53859.01563788434 -4.7312584117019 -0.16916375990663246 IIFDDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 IIFDDFR 7 0 P46977;P46977-2 P46977 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A 0 ;; 107.66 0.017281 144855000.0 474700.0 748680.0 813000.0 633170.0 825350.0 917980.0 695570.0 528960.0 782110.0 697780.0 False True 472144.2679441286 773599.3612133835 927463.333277321 713329.2570796179 930453.4302672815 854522.2032924842 661922.6217645624 568433.6812044557 589369.4702370698 653247.0830004858 0.7227652143129087 1.1842369929309093 1.419774167252778 1.0919746534544992 1.4243514505928372 1.3081148397441045 1.0132806391177873 0.8701664285947266 0.9022152345939086 1.0 19.317269251808163 2.0604725664889276 5.131671762034021 0.9163487678271824 1.2069206469652791 0.29168244830198486 0.1899334862915046 0.2331505463826033 12.415986764441795 0.07499335097598846 0.053754047735378716 114.9403635605066 -2.0604725664889276 0.2905718791380967 IIFEDDR ddPTM_BT-474_Trastuzumab_2h_R1 10 IIFEDDR 7 0 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 ;;;;;;;;; 173.93 0.0019657 47261220000.0 37562040.0 47165950.0 41157830.0 42755710.0 41375520.0 44631430.0 42571340.0 39072940.0 48450390.0 44381570.0 False True 37359810.150174975 48735840.13333117 46952494.71372856 48168578.502158284 46644447.220079385 41546164.295185395 40512001.64588836 41988761.19116909 36510440.586464025 41549100.20562623 0.8991725444180865 1.172969809024451 1.1300484121523924 1.1593170071980452 1.1226343528316214 0.9999293387720479 0.9750392053111794 1.010581720984738 0.8787299942904682 1.0 25.308313898296518 2.6412978462964927 4.115664995793531 0.9736157581976235 1.106330030324 0.3821322303248048 0.07888704636630453 0.24000913361681278 7.215201432107188 0.025693331575651585 0.024198199029034997 437.82226792835917 -2.6412978462964927 0.13271427212637654 IIFVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIFVGR 6 0 B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YCC8 B1ANR0 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 ; 164.54 0.017566 497180000.0 293710.0 351860.0 308530.0 322060.0 332710.0 324460.0 311500.0 270590.0 387530.0 329630.0 False True 292128.69799424836 363571.44739613816 351968.34220916557 362832.7629784445 375078.6463733291 302030.8438966853 296431.5549544416 290782.79982817866 292028.42413595424 308592.73118955904 0.9466480200883367 1.1781594660206283 1.140559406089712 1.1757657465871012 1.2154487402456988 0.9787360924945345 0.9605915013349838 0.9422866141638304 0.9463230809431158 1.0 18.235344554491018 2.6378658796549748 6.2582627912410285 0.9580599559311486 1.1365143034602665 0.5885002274702462 0.06920800129111473 0.1593851799807159 8.371108402792277 0.022251009434533307 0.02094049270113484 434.37605791817515 -2.6378658796549748 0.17845434752911793 IIGEDS(ph)PSRLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IIGEDSPSRLDR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 IIGEDS(0.989)PS(0.011)RLDR 126.16 0.00022154 0.0 102280.0 126460.0 99406.0 114050.0 104200.0 124770.0 116510.0 121920.0 128720.0 124600.0 True False 101729.3358443764 130669.14465331574 113401.50074755868 128488.71830619016 117469.25235821273 116144.94357698776 110873.96618857783 131018.2894972155 96998.68075963177 116647.92132457302 0.8721058608606866 1.1202012275017628 0.9721690661938057 1.10150885542718 1.0070411116144484 0.9956880693468534 0.9505010027574418 1.1231943785149578 0.8315508725589099 1.0 16.83180107304525 1.233328055423017 24.999969191727715 0.9157754976601601 1.0229493775537284 0.18709092452964027 0.0845243145837702 200.43518619262704 957580.4972149646 0.06627601132502425 0.018506322437472647 17.113075067931657 -1.233328055423017 0.1071738798935683 IIGLKDEFYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 IIGLKDEFYNR 11 1 Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7;Q5MIZ7-5;Q6IN85-2;Q6IN85;G3V5Z3;Q6IN85-4 Q5MIZ7-3;Q6IN85-2 SMEK2;SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3B;Serine/threonine-protein phosphatase 4 regulatory subunit 3A 0 114.82 0.0011004 253370000.0 278400.0 315160.0 292390.0 276570.0 256300.0 327460.0 351690.0 272530.0 441970.0 337690.0 False True 276901.125333148 325649.9100817571 333555.9705005608 311583.7336426391 288938.2857908821 304823.4609579261 334677.41111373215 292867.57247929904 333052.4155945807 316138.3350890456 0.8758859480143534 1.0300867498085369 1.0550949805141767 0.9855930112204723 0.913961559611231 0.964209104448113 1.058642290310869 0.9263905701180088 1.0535021496231103 1.0 18.270196462192718 1.2160428684260138 24.998090817530866 1.026751047388238 0.9798777094562431 0.10441428694770938 0.05840544962020293 676.7476624832585 751272.3545323575 0.05435514076877309 0.013628790500753126 16.445340441967968 -1.2160428684260138 -0.046873337931994885 IIGVHQEDELLECLS(ph)PATSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIGVHQEDELLECLSPATSR 20 0 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 1 IIGVHQEDELLECLS(1)PATSR;IIGVHQEDELLECLS(0.999)PAT(0.001)SR 219.34 5.9754e-25 198936000.0 139963.0 158239.0 124990.0 114156.0 117492.0 124491.0 97889.0 108423.0 144028.0 135633.0 True False 139209.45475935127 163505.8894575047 142587.50556744446 128608.13789532169 132453.90977035608 115885.23019029229 93153.73509770581 116514.0748208382 108534.22927632251 126976.78581874665 1.0963378373592334 1.2876833226106512 1.1229415254768016 1.012847640346667 1.0431348448166562 0.9126489495151734 0.7336280761640821 0.9176013872894572 0.8547564704563398 1.0 16.954205238793037 3.2949570270220825 1.120532524082101 0.8685497580049627 1.1914780600476116 0.6740961821327669 0.08382772786398127 0.2625044034712675 0.6979570395867739 0.03201246137206236 0.0540511265624495 1972.2275766347 -3.2949570270220825 0.3229283020426489 IIGVHQEDELLECLSPATSR ddPTM_BT-474_Trastuzumab_2h_R1 3 IIGVHQEDELLECLSPATSR 20 0 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ;; 249.06 2.4011e-30 593370000.0 374270.0 439861.0 363027.0 378603.0 369208.0 375835.0 337078.0 293272.0 404170.0 431580.0 False True 372254.97190530633 454501.5074834101 414138.0461127504 426534.1009809593 416224.45033273444 349854.4110704273 320772.2493769934 315157.4458450415 304567.71910053113 404036.1949057728 0.9213406536315928 1.1249029498196481 1.025002342201875 1.055682897618698 1.0301662464418668 0.8658986879925905 0.793919587951278 0.780022804438451 0.7538129577018733 1.0 18.624125014621935 2.6586199190439497 3.087754447887382 0.8104616150843568 1.039609481047979 0.5948063118868949 0.07892207589832984 0.15117576295524232 2.8144395278611687 0.025248729895841097 0.023994379213747145 455.6379812895947 -2.6586199190439497 0.22914786596362224 IIHGQDFDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IIHGQDFDQR 10 0 Q14344 Q14344 GNA13 Guanine nucleotide-binding protein subunit alpha-13 0 114.86 0.0012992 253230000.0 310900.0 318620.0 302080.0 272160.0 277140.0 522060.0 337170.0 190550.0 360920.0 308910.0 False True 309226.14894423756 329225.07409014273 344610.2382735708 306615.4280948062 312432.1362625243 485971.2209970529 320859.79898551904 204769.80859329426 271976.10208022274 289195.0993288436 1.0692648307730024 1.138418579202067 1.1916185269851847 1.0602372889664842 1.0803507285829137 1.6804268887158953 1.1094925181310542 0.7080680449582952 0.9404588899031061 1.0 18.141683579167477 1.983383690379101 24.551110511477727 0.8649990612642153 1.2050622595023095 0.3798843290126025 0.18278638010987727 563.6916453492787 832871.1385994112 0.07550411636248013 0.05016115024779762 96.24622187535843 -1.983383690379101 0.34006319823809417 IIHGS(ph)ESMDSGISLDNSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 IIHGSESMDSGISLDNSYK 19 0 P42574;A8MVM1;C9JXR7 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 1 IIHGS(0.604)ES(0.394)MDS(0.002)GISLDNSYK 138.82 7.463500000000002e-07 154390000.0 323840.0 219390.0 295040.0 225860.0 199330.0 308910.0 285340.0 275500.0 394590.0 352680.0 True False 322096.48142200673 226692.2635259442 336579.0674663472 254453.85284205244 224713.49397852688 287555.77879592305 271537.01409534627 296059.2089606534 297348.58173510816 330171.6604554611 0.9755424828941559 0.6865891009944026 1.0194062900554435 0.7706713910304767 0.6805959471765138 0.8709281056988633 0.8224116319394879 0.8966826787988081 0.9005878376264196 1.0 18.332856769506375 1.108539396164059 1.085804250002171 0.9957584852340361 0.8261808973008186 0.19738400796385014 0.10334516417700902 0.7364428550189079 1.8321619822419573 0.09160710589416407 0.02995935611987093 12.839242338348335 -1.108539396164059 -0.16957758793321753 IIIDKEYYYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 IIIDKEYYYTK 11 1 Q7L5N1;E7EM64 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 0 156.8 2.8174e-05 586260000.0 555990.0 635620.0 600910.0 530760.0 553120.0 696040.0 727360.0 599830.0 910100.0 717330.0 False True 552996.6116162962 656776.2274595965 685512.9047966475 597954.1615799512 623556.5534009067 647924.3931019203 692174.8180149682 644592.360475024 685818.0497152029 671549.3852628897 0.8234638043780147 0.9780013828804117 1.0207929898235133 0.8904098115522384 0.9285341734871885 0.9648201715623327 1.0307132032352384 0.9598584625651725 1.0212473792180266 1.0 19.357133972755264 2.486267694899734 5.158236264263715 0.996870988100815 0.9348595967738981 0.3096419816905994 0.0517803481111217 0.26509691271256486 21.422924340758993 0.017735615287264115 0.015663942360636028 306.38513800021684 -2.486267694899734 -0.06201139132691691 IIIEELSLVAASPTLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIIEELSLVAASPTLSPR 18 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;H0Y5V5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 IIIEELSLVAASPT(0.151)LS(0.849)PR;IIIEELSLVAAS(0.001)PT(0.057)LS(0.942)PR 180.88 8.0074e-14 1114010000.0 152844.0 227258.0 166250.0 184376.0 138800.0 159415.0 196678.0 128686.0 145570.0 148911.0 True False 152021.10488656492 234822.14514963794 189656.55492909517 207717.98269550267 156475.35726794542 148395.01627254553 187163.93375707773 138289.20277426753 109696.22403806384 139407.37249087883 1.0904810998895442 1.6844313249286864 1.360448529660826 1.4900071566092623 1.1224324400646983 1.0644703620840048 1.3425684051919387 0.991979120640234 0.7868753429467373 1.0 17.088947333884025 2.3911874722907513 0.6734474593775559 0.9168543300167589 1.4282132607365263 0.4681076538190362 0.18661372129004913 0.6294316772831974 0.5701892121758075 0.15144769753269396 0.11366944047354319 246.14299025157953 -2.3911874722907513 0.5113589307197675 IIILYDDDER ddPTM_BT-474_Trastuzumab_2h_R1 5 IIILYDDDER 10 0 Q9BYV8-5;Q9BYV8-2;Q9BYV8 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 0 ;;;; 170.18 1.025e-05 268146000.0 296534.0 346774.0 330815.0 320139.0 302658.0 329387.0 351248.0 282073.0 380284.0 321175.0 False True 294937.4938920244 358316.1629606899 377390.87650447304 360668.56457540847 341199.7023054887 306617.2519835956 334256.7923423364 303122.7195976713 286568.1037445293 300677.33652824827 0.980910291734992 1.1916966110514504 1.255135757360341 1.1995202855654008 1.1347702698351971 1.0197551153137518 1.1116793709888853 1.0081329144978417 0.9530751703915222 1.0 18.197856603703837 2.2659797804064574 0.9876385550878799 0.9853534464951444 1.1639240513542766 0.4423566114095927 0.07551508324133213 0.5128711132505139 0.9596853868955658 0.05597627388967783 0.032486398463284445 184.49295221787008 -2.2659797804064574 0.17857060485913212 IIKPVLTQESATYIAEEYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IIKPVLTQESATYIAEEYSR 20 1 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 0 208.92 4.7417e-22 777420000.0 216280.0 251160.0 239070.0 233100.0 226010.0 237210.0 250850.0 213250.0 297310.0 273370.0 False True 215115.57251096683 259519.70877057392 272728.977966309 262610.43609971844 254791.03383377794 220812.23103227766 238715.42715994144 229163.79786155844 224041.93424989216 255923.29255616784 0.8405470653428512 1.0140527115702718 1.065666884957151 1.0261294838651036 0.9955757887018377 0.8628063074165697 0.9327616285944361 0.8954393934708523 0.8754261169905876 1.0 17.96535193297482 2.7605484479394615 22.383195983350976 0.907613413183007 0.9962092045268494 0.24236282422188138 0.06529066457613722 263.4400426121253 268175.6623812075 0.019753178714391004 0.02092487258308637 576.1670895844965 -2.7605484479394615 0.08859579134384232 IILDLISES(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IILDLISESPIK 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 IILDLISES(1)PIK 228.8 1.017e-11 299670000.0 352750.0 282490.0 254960.0 241580.0 241300.0 320460.0 334760.0 337620.0 445400.0 338590.0 True False 350850.83319420944 291892.50888118916 290856.1518479529 272164.0032302443 272028.1247028474 298307.3544816981 318566.37989261263 362814.9187996223 335637.13805422554 316980.8963185166 1.1068516660438075 0.9208520521939673 0.917582590074096 0.8586132678379512 0.8581846031172218 0.9410893777710361 1.005001826900328 1.1445955356093436 1.0588560444884425 1.0 18.27403636963735 2.0615928341789185 3.49801342743776 1.0827593102406463 0.925840294873238 0.39456327420199777 0.07336234444441704 0.20607842959603326 5.078160566542756 0.03226601859674596 0.021266994463582364 115.23723629991169 -2.0615928341789185 -0.15691901536740827 IILDLISES(ph)PIKGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IILDLISESPIKGR 14 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 IILDLISES(1)PIKGR;IILDLISES(1)PIKGR 241.32 1.1880999999999999e-17 2659100000.0 876610.0 891600.0 816830.0 797630.0 812380.0 1062200.0 1158430.0 1021380.0 1452050.0 1175460.0 True False 871890.4291605272 921276.3670164181 931832.5639863632 898609.8762171543 915831.7776464947 988772.6141498473 1102392.3152676541 1097600.5620625496 1094211.7339731448 1100441.1364380643 0.7923099203494739 0.8371882298024852 0.8467809255136921 0.8165905894119857 0.8322405872711031 0.8985238568510184 1.0017730878690208 0.9974186948474962 0.9943391770276028 1.0 20.06965054559396 2.439796175297998 2.3790599021088457 1.0001951725087048 0.8259180568483531 0.9691993831670203 0.014540551806105608 0.04635300328624498 0.5346606821891097 0.005860735539345168 0.004778746776621064 275.29363817585534 -2.439796175297998 -0.17427711566035176 IILHNTMESLLER ddPTM_BT-474_Trastuzumab_2h_R1 2 IILHNTMESLLER 13 0 O15498 O15498 YKT6 Synaptobrevin homolog YKT6 0 ; 224.05 1.476e-11 1144940000.0 534800.0 845840.0 874860.0 851760.0 832390.0 878580.0 860880.0 664140.0 879550.0 843600.0 False True 531920.6962218662 873993.2730789231 998032.6835805618 959592.7286670806 938389.9325379325 817845.8325548604 819235.9455190373 713701.4992345865 662796.6878661759 789760.7257577033 0.6735213323143372 1.1066557813955693 1.2637152634084716 1.215042350639099 1.1881952367758388 1.0355615389334687 1.0373217087150735 0.9036933288241892 0.8392373363847423 1.0 19.59105609981494 1.959968376916122 2.0460072393343856 0.9021031574754304 1.1030076822368975 0.1741600078358877 0.15741015076792042 0.5141801639924366 3.981829870820716 0.0956999787986445 0.048286346751973484 91.19444338488492 -1.959968376916122 0.20090452476146714 IILTECAPNPPS(ph)PPEAR ddPTM_BT-474_Trastuzumab_2h_R1 6 IILTECAPNPPSPPEAR 17 0 A0A087WTE6 A0A087WTE6 SRCIN1 1 IILTECAPNPPS(1)PPEAR;IILTECAPNPPS(1)PPEAR;IILTECAPNPPS(1)PPEAR;IILTECAPNPPS(1)PPEAR;IILTECAPNPPS(1)PPEAR;IILTECAPNPPS(1)PPEAR 290.92 5.8009e-46 2523970000.0 1364249.0 1576250.0 1346846.0 1539029.0 1565694.0 1415883.0 1314819.0 1357074.0 1738680.0 1515075.0 True False 1356904.0349663135 1628714.5283867526 1536470.2098047042 1733869.9135997999 1765075.8503046005 1318006.3408400754 1251216.1818736575 1458345.7529621406 1310205.6111183693 1418381.6163790338 0.9566565297358651 1.148290777022812 1.0832558685631706 1.2224283603069896 1.244429446858341 0.9292325320775061 0.8821435412197949 1.0281758703874988 0.9237327923518739 1.0 20.435814312047725 2.720774247207127 24.9573063031932 0.9546393882686037 1.1343976665095414 0.5367198435943803 0.08281207305664127 647.2530079866671 908204.7997508179 0.02736139725313541 0.02584796134443406 525.7439057718188 -2.720774247207127 0.1797582782409377 IILWDHDLNPER ddPTM_BT-474_Trastuzumab_2h_R1 3 IILWDHDLNPER 12 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 0 ;; 209.67 5.2459e-08 650120000.0 329947.0 389670.0 382306.0 388391.0 350859.0 345548.0 372188.0 304474.0 424004.0 386129.0 False True 328170.60201255797 402639.930389511 436131.3617366779 437561.26077737386 395538.8139457783 321661.0800924977 354183.8445437684 327195.3959676443 319513.89556251455 361485.9166383312 0.9078378628534362 1.1138467969482602 1.2064961362603508 1.210451751057169 1.0942025560058464 0.889830185042372 0.979799843483616 0.905140092345576 0.8838903007172755 1.0 18.463579915826692 2.8031398502399307 5.666826060174698 0.928380582075265 1.120104191543065 0.5096790044972928 0.08536420979157554 0.17627123351920346 11.282845586330163 0.0271429132355237 0.028687105566120093 635.5355522056573 -2.8031398502399307 0.19172360946779998 IIMYDQNHLLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IIMYDQNHLLGR 12 0 Q6PD62;H0YCE8 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 0 142.1 6.107399999999999e-05 229130000.0 195950.0 428030.0 512550.0 538060.0 497750.0 338280.0 400620.0 305840.0 235480.0 482380.0 False True 194895.02697209187 442276.7198004016 584712.5848355356 606178.3408314646 561135.5121046094 314895.49982546584 381240.4800829811 328663.33382405236 177449.1092703391 451594.09541370417 0.4315712471695385 0.9793678090392945 1.294774645580523 1.342307941994118 1.242566095977306 0.6972976463232782 0.8442105066358933 0.727784834128455 0.39293939197273703 1.0 18.784667097454154 2.7246905284596346 24.13241888476271 0.7262485750431951 1.0826785333376279 0.2530128544778508 0.2780935926687079 693.8071754737102 1207145.2022841375 0.0934135301550555 0.08852687334975154 530.5062789286258 -2.7246905284596346 0.3564299582944328 IINDLLQSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IINDLLQSLR 10 0 A0A087WTP3;Q92945 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ; 121.6 0.001188 215414000.0 295610.0 303780.0 344960.0 269440.0 282770.0 428970.0 387980.0 355780.0 395030.0 367770.0 False True 294018.4686053588 313891.1336611118 393527.36955392954 303551.07637369446 318779.0833909 399316.3135867632 369211.9251724701 382330.1102142332 297680.14963080565 344298.6037362622 0.8539635810738904 0.9116828539379064 1.1429827634601077 0.8816506168762133 0.9258796867938781 1.1597964942449939 1.0723596354032614 1.1104608211164972 0.8645987709518365 1.0 18.39330080467123 2.7728166079008245 24.969855159061954 1.0559077414884064 0.9491552505999098 0.17637791910844536 0.10339136914934663 1012.4164596720168 737968.1458181062 0.03162855277197325 0.033545662554789 592.6749993536631 -2.7728166079008245 -0.10675249088849659 IINEPTAAAIAYGLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IINEPTAAAIAYGLDK 16 0 Q53FA3;P34931;P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PI65;P11021;P54652 Q53FA3;P11142;P11021;P54652 HSPA1L;HSPA8;HSPA5;HSPA2 Heat shock 70 kDa protein 1-like;Heat shock cognate 71 kDa protein;78 kDa glucose-regulated protein;Heat shock-related 70 kDa protein 2 0 ; 191.49 1.598e-09 130154000.0 205119.0 196711.0 213000.0 138845.0 145520.0 180182.0 192363.0 173582.0 256930.0 215707.0 False True 204014.66209486334 203258.40672068953 242988.54857081073 156422.76276390135 164051.10943538466 167726.44244280516 183057.6667919787 186535.5702715359 193613.04418561343 201940.39458394627 1.0102716819742312 1.0065267384440777 1.2032686628717109 0.7745986784178372 0.8123739174293279 0.8305740057028638 0.9064935580081872 0.9237159838963936 0.9587633251114047 1.0 17.62356999945441 3.7330186324020787 24.999388680964064 0.8819821796969806 1.0666727990336236 0.5224937717254381 0.08163484939258862 357.6038694645004 1613119.9948633264 0.022094949053389847 0.03529614895655793 5407.775232590271 -3.7330186324020787 0.184690619336643 IINEPTAAAIAYGLDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IINEPTAAAIAYGLDKK 17 1 P11142;E9PKE3;P11142-2;E9PN89;E9PI65;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ; 221.41 5.9223e-15 3631300000.0 1526970.0 1380940.0 1282340.0 1145090.0 1176970.0 1452870.0 1545040.0 1449890.0 2431960.0 1530420.0 False True 1518748.9631823173 1426903.7531041405 1462882.3257009084 1290058.276591278 1326850.1530522609 1352436.516588108 1470300.512574033 1558088.1541922397 1832636.0445944215 1432747.2853415178 1.060025713341554 0.9959214494439023 1.0210330465586661 0.9004088088596673 0.9260880593718838 0.9439463123922328 1.0262106427398074 1.0874828869913684 1.2791062759945024 1.0 20.450352732073764 1.7115695850857855 2.700046870216525 1.1474330422221266 0.9740514627057318 0.4186068061903677 0.07740522046529905 0.2060178403591238 3.2635289058550687 0.04684869697791101 0.02068892449914229 51.471827144130366 -1.7115695850857855 -0.17338157951639477 IINEPTAAAIAYGLDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 IINEPTAAAIAYGLDKR 17 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 280.43 1.0269e-35 7284800000.0 1892150.0 2492800.0 2343900.0 1849740.0 2123000.0 2174000.0 2334800.0 2385400.0 3830100.0 2250300.0 False True 1881962.874637626 2575771.3410705794 2673900.7464559823 2083916.8943418865 2393351.4659931418 2023716.4970455335 2221856.8041978497 2563410.660815767 2886223.1757105775 2106683.9274212434 0.8933294881787537 1.2226662517065567 1.269246284006666 0.9891929525910298 1.1360752483277372 0.9606170487676009 1.0546702214212018 1.2167988882668295 1.3700314214878713 1.0 21.00654244752898 1.6848034589216392 6.069148333887689 1.2206720981623032 1.083077762067161 0.1294817084044022 0.1373646543460254 0.2464774628589637 19.728449607114257 0.06894126663706222 0.034681991125749434 48.39533037137223 -1.6848034589216392 -0.13759433609514216 IINEPTAAAIAYGLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IINEPTAAAIAYGLDR 16 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;P17066 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 0 ; 202.4 7.088899999999999e-11 241070000.0 87303.0 110640.0 107472.0 98256.0 96331.0 104279.0 99927.0 89407.0 126027.0 102976.0 False True 86832.97034827524 114322.58551670764 122603.12343663002 110695.19952558535 108598.18185142969 97070.4381763621 95093.14925178984 96079.004339547 94969.3345252805 96403.983517811 0.9007197335598951 1.1858699334305631 1.2717640803087626 1.14824300289556 1.1264906063904068 1.0069131443974821 0.9864026960485615 0.9966289859982399 0.9851183639909917 1.0 16.55680514096997 2.738275630373264 3.7165047657710417 0.9923748658098904 1.141023034987489 0.3561887941127393 0.08779229661218511 0.2465968606130295 7.629461619751947 0.029228823195074707 0.029214905009321536 547.36324354294 -2.738275630373264 0.1486481691775986 IINLGPVHPGPLS(ph)PEPQPMGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IINLGPVHPGPLSPEPQPMGVR 22 0 Q86T03-2;Q86T03 Q86T03-2 TMEM55B Type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase 1 IINLGPVHPGPLS(1)PEPQPMGVR;IINLGPVHPGPLS(1)PEPQPMGVR 172.18 3.335e-12 409200000.0 232060.0 335370.0 309470.0 263470.0 283840.0 288390.0 212198.0 191128.0 238210.0 216263.0 True False 230810.61474428972 346532.5877145541 353040.6860385393 296825.274985812 319985.3415485129 268454.2780970385 201933.17206492028 205390.94188831883 179506.3373504653 202460.91018793068 1.1400255710104432 1.7116024391715492 1.7437474014654761 1.4660868347884504 1.5804796158008592 1.3259560961562935 0.9973933826410217 1.0144720859827627 0.8866221987436577 1.0 17.62728386331394 2.3883596151680098 2.3444070546118314 0.9688354681694117 1.548378991286799 0.7297616476917568 0.15861992997429772 0.14849153109793958 1.6713218777163465 0.06384348267197407 0.04993352841143317 244.54546598953175 -2.3883596151680098 0.5795435231173872 IINQNSVAVLQT(ph)PPDIQSEHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IINQNSVAVLQTPPDIQSEHSR 22 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 IINQNSVAVLQT(1)PPDIQSEHSR 177.6 2.3274e-16 357990000.0 104670.0 146730.0 136520.0 156380.0 146300.0 145350.0 139130.0 127250.0 135280.0 127040.0 True False 104106.46834993029 151613.81934984206 155740.82934688762 176177.69196599722 164930.4378119625 135302.29661709693 132399.75037178665 136746.04116240703 101942.05665912828 118932.1984355839 0.8753430081956862 1.2747920356652551 1.3094925629516554 1.4813288098884227 1.3867601875810964 1.1376422734704548 1.113237223505097 1.1497814970306084 0.8571443057478012 1.0 16.859779822276842 1.722664087776278 1.2048250737542803 0.9486532637800322 1.2676205611564968 0.33837662209508634 0.16090547522241258 0.5225719179772769 1.4258612030028546 0.1399657174520976 0.05415482817940431 52.80366751175438 -1.722664087776278 0.31896729737646456 IIPELVGS(ph)PTQSTSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 IIPELVGSPTQSTSSR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6;H7C409 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 IIPELVGS(0.873)PT(0.126)QSTSSR;IIPELVGS(0.876)PT(0.124)QSTSSR;IIPELVGS(0.603)PT(0.397)QSTSSR;IIPELVGS(0.988)PT(0.012)QSTSSR;IIPELVGS(0.911)PT(0.089)QSTSSR;IIPELVGS(0.871)PT(0.129)QSTSSR 224.07 8.5333e-15 747933000.0 428391.0 512388.0 496983.0 498912.0 505337.0 499746.0 476191.0 454961.0 552741.0 493052.0 True False 426084.5904547147 529442.5248349137 566953.8865463258 562074.2080453996 569688.6715829377 465199.735295546 453155.82210372627 488912.50006514665 416525.3868999343 461584.999236946 0.9230902025825848 1.147009815548911 1.2282762383603603 1.2177046675575984 1.2342010085351554 1.007831138500115 0.9817386242032256 1.0592036155277493 0.9023806830562074 1.0 18.816236813935543 2.6755610226796835 8.645079205976085 0.9981862288384697 1.1578961472816995 0.4328750981253844 0.09102910553087624 0.39279953044546717 51.01910688014289 0.03036540054354705 0.028636286033725308 473.76287187780144 -2.6755610226796835 0.1597099184432298 IIPGFMCQGGDFTR ddPTM_BT-474_Trastuzumab_2h_R1 7 IIPGFMCQGGDFTR 14 0 P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 P62937 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D 0 ;;;;;; 199.82 4.6767e-08 22205810000.0 759284.0 970122.0 892631.0 900849.0 738395.0 846991.0 860777.0 835563.0 987337.0 856190.0 False True 755196.0993083838 1002411.9243188672 1018305.6859122593 1014896.3910338703 832425.2264399455 788440.5057723522 819137.9280225344 897916.9539629424 744021.0259879772 801547.2211788627 0.9421729367331487 1.2505962192028885 1.2704250716690184 1.2661716792445836 1.0385230020705074 0.9836482304969706 1.0219459395265575 1.1202296386759913 0.9282310590431843 1.0 19.61242799014265 3.178773872734066 8.660268469498225 1.0265738040066619 1.1933357848882424 0.39939045556840547 0.0993679063860403 0.2965381107377163 39.29587256421904 0.028988407580864874 0.03475609144858141 1509.2940944089746 -3.178773872734066 0.16676198088158056 IIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 36 0 P61978;P61978-2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 IIPTLEEGLQLPS(0.971)PT(0.024)AT(0.004)S(0.001)QLPLESDAVECLNYQHYK;IIPTLEEGLQLPS(0.98)PT(0.02)ATSQLPLESDAVECLNYQHYK 199.59 7.338599999999999e-30 9845700000.0 1412560.0 1797000.0 1481520.0 1587660.0 1456350.0 1554250.0 1444350.0 1411810.0 1883940.0 1610790.0 True False 1404954.9339101687 1856812.0586905605 1690105.1383973132 1788657.5932135545 1641807.5400372643 1446808.355810957 1374481.2725471836 1517166.4312259173 1419668.230502647 1507988.0031332998 0.9316751399818508 1.231317526951457 1.1207682918468915 1.1861218985144968 1.088740451930595 0.9594296193370083 0.9114669809648912 1.0060865391989502 0.9414320455818338 1.0 20.524193520550817 2.8176755677347862 4.026845685742314 0.9628684441550326 1.1266384612522478 0.4807859415099702 0.07693961617995165 0.18288909884608992 5.617431081228856 0.022968296555326586 0.02422373595470585 657.1667287755445 -2.8176755677347862 0.16377001709721517 IIPTLEEYQHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIPTLEEYQHYK 12 0 P61978-3;Q5T6W2 P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ; 250.51 3.2280999999999996e-17 4233200000.0 1542770.0 1651990.0 1626120.0 1580000.0 1517640.0 1744590.0 1655200.0 1696470.0 2309400.0 1647230.0 False True 1534463.8977378625 1706975.4885009588 1855063.561511583 1780027.8379989485 1710902.458242974 1623990.5996231234 1575131.652521967 1823069.2059001108 1740279.3143745603 1542102.3711354472 0.995046714446097 1.1069145086938137 1.2029444972227772 1.1542864282663137 1.1094610126195705 1.0531016811986238 1.0214183455033536 1.1821972652553463 1.1285108867922924 1.0 20.556467109821728 2.992351553957315 24.32726463968434 1.0902933945486657 1.1219489310143753 0.04571257692144359 0.06937073812835837 1028.023898297228 3269834.863334715 0.021609576209526096 0.024806721727251756 982.5429729315853 -2.992351553957315 0.03165553646570962 IIPVLLEHGLER ddPTM_BT-474_Trastuzumab_2h_R1 2 IIPVLLEHGLER 12 0 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28 P18858 LIG1 DNA ligase 1;DNA ligase 0 ; 161.1 6.6268e-05 303250000.0 238760.0 330480.0 306460.0 323220.0 263240.0 348950.0 349960.0 291070.0 372660.0 344980.0 False True 237474.54268872965 341479.8270206214 349606.90420192835 364139.6188595067 296762.05365427904 324827.90783994406 333031.09782297414 312791.1214235118 280822.9363881631 322963.08104776224 0.7352993472761987 1.057333940191513 1.082498046116379 1.1274961140392854 0.9188729953018735 1.0057741175435035 1.0311738937545092 0.9685042649727938 0.8695202419951923 1.0 18.301009729654734 -0.3877874556557409 7.884921609718614 0.9999973487245484 0.9874837671107686 0.0 0.10878125557906013 0.0 0.0 0.10164298954817315 0.02395748238986221 0.4094610015054603 0.3877874556557409 -0.0125135816137798 IIQQVLQGLDYLHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIQQVLQGLDYLHTK 15 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3 H3BLV9 SRPK1 SRSF protein kinase 1 0 ; 242.19 6.476e-18 169505000.0 281980.0 249510.0 260390.0 245850.0 250000.0 279950.0 293340.0 279490.0 363760.0 316660.0 False True 280461.8510109233 257814.78951801994 297050.64864954696 276974.5847924316 281836.01813390735 260597.71543141583 279150.02353237884 300346.96302146354 274116.2221342731 296450.4876937345 0.9460664180140286 0.8696723406451958 1.0020244896895987 0.9343030161534981 0.9507018198097029 0.879059830391109 0.9416413030859003 1.013143764269177 0.9246610598173981 1.0 18.177431644558872 1.9778563028298646 23.536271951383295 0.9798946755765878 0.9301202780148855 0.2239614442159522 0.04084995828776337 513.3981502262129 545683.4098493214 0.016136939379519977 0.010527986897179513 95.02903143609687 -1.9778563028298646 -0.04977439756170232 IIS(ph)ENSMDSAISDATSELEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 IISENSMDSAISDATSELEGK 21 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 IIS(0.622)ENS(0.37)MDS(0.009)AISDATSELEGK 177.0 4.2651000000000005e-17 12141000.0 9486.8 9358.9 9028.0 8726.6 8530.4 10795.0 8341.7 8289.4 15785.0 14293.0 True False 9435.72412288257 9670.405328925483 10299.063927217278 9831.386665241544 9616.695876357937 10048.767058696665 7938.180102611454 8907.997120720305 11894.99825816335 13380.80850314706 0.7051684597880137 0.7227071014917432 0.7696892100948175 0.7347378645265926 0.7186931846529427 0.7509835490384064 0.5932511552455486 0.6657293629622766 0.8889596062424584 1.0 13.707877669537861 1.0679518210529186 4.117691743223185 0.9972006986139337 0.7058750195949789 0.8105878650535354 0.04719400340176161 0.08350703273492144 2.685986039373607 0.05068810503842601 0.012991972744213702 11.693696584849825 -1.0679518210529186 -0.2913256790189548 IIS(ph)PGSSTPS(ph)STRSPPPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IISPGSSTPSSTRSPPPGR 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 2 IIS(0.904)PGS(0.042)S(0.045)T(0.031)PS(0.348)S(0.309)T(0.275)RS(0.045)PPPGR 51.301 0.07774 86986000.0 66703.0 78721.0 71941.0 90376.0 84979.0 86939.0 86491.0 78179.0 96854.0 98317.0 True False 66343.87845939996 81341.18089715052 82069.6674776184 101817.59233353988 95800.57194000515 80929.11156239269 82307.09990229408 84013.11396491816 72985.62947710817 92042.32488658145 0.7207975085500259 0.8837367047973056 0.8916513960153462 1.1062040475292638 1.0408317266872036 0.8792597499261025 0.8942309964868496 0.9127661004700041 0.7929572570775916 1.0 16.4900098044411 4.739131864908896 1.9977455797977353 0.9399290651329871 0.6572147992853006 0.3806699479803082 0.08453554997001374 0.8540415372252572 3.649505495725126 0.02299114393588476 0.4428422611917907 54844.346362658216 -4.739131864908896 -0.28271426584768655 IISGHIDLDNR ddPTM_BT-474_Trastuzumab_2h_R1 4 IISGHIDLDNR 11 0 O94874;O94874-3;O94874-2 O94874 UFL1 E3 UFM1-protein ligase 1 0 ;;; 171.05 1.4987e-05 652140000.0 371095.0 591215.0 512312.0 535574.0 551990.0 519679.0 509619.0 455984.0 578303.0 473152.0 False True 369097.06575253024 610893.2338779852 584441.0765042691 603377.6134863605 622282.654598942 483754.813922781 484966.7820363646 490011.8415198361 435787.97451318626 442955.03427419224 0.8332607989371142 1.3791314842576956 1.319414006574979 1.3621644790086427 1.404843847454152 1.0921081746264416 1.0948442720173868 1.106233824213668 0.9838198932025919 1.0 18.75680072824602 2.602626628975527 6.8412954930738135 1.0658780956469247 1.2749855790730804 0.2956651162455628 0.15685949473661578 0.3208491451979892 16.52986078261226 0.050330132978345245 0.04733327825321636 400.52223317309017 -2.602626628975527 0.2091074834261557 IISPGS(ph)STPSSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 IISPGSSTPSSTR 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 IISPGS(0.475)S(0.262)T(0.262)PS(0.001)STR 199.96 1.192e-07 268070000.0 404850.0 460200.0 376930.0 387930.0 317180.0 455860.0 417010.0 399940.0 500910.0 463310.0 True False 402670.3325830631 475517.4788032255 429998.4676657077 437041.8982246415 357570.99292685103 424347.4711790139 396837.63316710055 429785.55365417 377467.4423501176 433741.15914035286 0.9283655103913354 1.0963162447983277 0.9913711406082306 1.0076099282134776 0.824387968242474 0.9783426410812461 0.9149180906732652 0.990880262564838 0.8702596799857174 1.0 18.726474826261757 3.4277986237944207 24.9997343332535 0.9331784437050129 1.0119555803663616 0.2529496036094031 0.06363155237951397 140.4485129338911 71187.44479700585 0.016522639399790068 0.02237176705363163 2677.9263203517894 -3.4277986237944207 0.07877713666134867 IISPGSST(ph)PSSTR ddPTM_BT-474_Trastuzumab_2h_R1 3 IISPGSSTPSSTR 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 IISPGS(0.142)S(0.307)T(0.551)PSSTR;IISPGS(0.127)S(0.127)T(0.746)PSSTR;IISPGS(0.187)S(0.187)T(0.625)PSSTR 178.22 0.00016524 1203630000.0 1318030.0 1294340.0 1166430.0 1245700.0 1197060.0 1290340.0 1273910.0 1290540.0 1572480.0 1300830.0 True False 1310933.8729268995 1337421.3244549483 1330653.2052086883 1403405.4922755018 1349498.4954694998 1201141.8329336417 1212286.1064912148 1386846.6480293365 1184963.3741524688 1217809.9157034068 1.0764683847804806 1.0982184552853258 1.0926608397995374 1.1524011047856308 1.108135578523377 0.986313066961573 0.9954641449860413 1.1388038725471323 0.9730281868069978 1.0 20.21585753419971 2.767203747807426 23.472451243688177 1.0345018755112767 1.1070518873991504 0.4338397998888742 0.04792975694935988 401.2168969702173 328787.7543929102 0.015491048284194857 0.01642665453069315 585.0645008274639 -2.767203747807426 0.07255001188787369 IISSDRDLLAVVFYGTEK ddPTM_BT-474_Trastuzumab_2h_R1 3 IISSDRDLLAVVFYGTEK 18 1 P12956;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;; 245.03 3.1805e-24 3275483000.0 5991700.0 6423000.0 5914610.0 6316360.0 5633190.0 7251330.0 7022750.0 6274590.0 9670750.0 7357730.0 False True 5959441.352940446 6636785.672214501 6747335.677288277 7116010.528369015 6350543.3559669815 6750062.624894747 6683032.752989752 6742831.767522425 7287523.243910873 6888153.372130434 0.8651725696254717 0.9635072440557189 0.9795565389975335 1.0330795706670084 0.9219515032376268 0.9799524284992833 0.9702212468191254 0.9789026758323962 1.0579792362632772 1.0 22.71568583557063 4.767585369660481 2.3762418899045907 0.9866668634682759 0.8309738101654894 0.5370253397842593 0.03467847207752845 0.4891902754888234 3.132178868830619 0.008448981465475196 0.16140440515027824 58557.88327705395 -4.767585369660481 -0.1556930533027865 IISVT(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 4 IISVTPVK 8 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 IISVT(1)PVK;IISVT(1)PVK;IIS(0.035)VT(0.965)PVK;IISVT(1)PVK 172.27 0.0031805 1585560000.0 3592890.0 2662270.0 2356730.0 2078340.0 2034330.0 3354720.0 3282700.0 2758310.0 4382300.0 3531450.0 True False 3573546.2794476068 2750882.0475738007 2688537.09893562 2341457.630902999 2293389.8670814093 3122816.10256145 3123903.259868204 2964149.0986143793 3302340.88481148 3306069.837573547 1.080904655683369 0.832070156628264 0.8132124338029234 0.7082299364315564 0.6936906900807084 0.9445705190708875 0.9448993558348295 0.8965778837841742 0.9988720889317922 1.0 21.656685769833665 2.599790837025202 18.358613073549076 0.9452756411908335 0.8187691274377847 0.2867347616904984 0.10248185540785588 3.7065500536548717 538.8812788132756 0.03454551935316086 0.032569619262537895 397.91548211424913 -2.599790837025202 -0.12650651375304878 IISVT(ph)PVKNIDPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 IISVTPVKNIDPVK 14 1 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 IIS(0.189)VT(0.811)PVKNIDPVK 86.213 0.01201 446910000.0 691600.0 571640.0 594350.0 618570.0 473650.0 736890.0 893030.0 616470.0 1057400.0 921280.0 True False 687876.5024439829 590666.6918363227 678029.3138171895 696880.8985765885 533966.5199565012 685950.5287524771 849830.727194109 662474.1217712318 796817.9384340789 862483.1216525086 0.7975535812527191 0.6848443488431536 0.7861363275354217 0.8079936651297848 0.6191037326428219 0.7953205245781542 0.9853302700762911 0.7681009693290441 0.9238649643454867 1.0 19.718136698697318 2.468085675934208 24.5156010420282 0.8890911041490757 0.7390146770688527 0.5144876392718952 0.08070254482167323 143.64422618241642 389735.67961796187 0.026995745890934158 0.02261820640151469 293.82292372803335 -2.468085675934208 -0.15007642708022295 IITDVIGNPEEERR ddPTM_BT-474_Trastuzumab_2h_R1 3 IITDVIGNPEEERR 14 1 J3KMX2;B9EGA3;Q92925-3;Q92925-2;Q92925;J3QWB6 J3KMX2 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 0 ;; 266.2 1.2303e-24 1059230000.0 711211.0 892168.0 872092.0 945466.0 837268.0 871611.0 892044.0 779927.0 966445.0 896930.0 False True 707381.918998971 921863.2725530562 994874.973240448 1065161.8986591871 943889.1169237611 811358.5831215981 848892.4237809955 838129.1131290587 728277.5794495207 839687.1594995939 0.8424350795366821 1.0978651538537694 1.184816228264509 1.2685223140651138 1.1240961663463636 0.9662629396466202 1.010962730794749 0.9981444918468639 0.8673201337073356 1.0 19.679492400537416 2.7388032306865933 24.818109201791806 0.9744375657206718 1.1169115865518804 0.27480111251407446 0.10836932453464887 27.24487542253735 2787136.840314576 0.035627172392930256 0.03567615027528679 548.0286089085797 -2.7388032306865933 0.14247402083120864 IITVEKHPDADSLYVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IITVEKHPDADSLYVEK 17 1 P54577 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed 0 60.317 0.047549 474420000.0 99845.0 153450.0 167100.0 225880.0 168980.0 150950.0 195240.0 146200.0 230590.0 169150.0 False True 99307.44561382223 158557.49048751607 190626.2275407627 254476.38484000153 190498.60137707065 140515.18179807873 185795.4953107713 157110.18638855746 173764.18424769616 158354.7021833991 0.6271202827864811 1.001280595405889 1.2037926560588532 1.6070023897697636 1.2029867048497491 0.8873445490449696 1.173286885384632 0.9921409609081245 1.097309911558234 1.0 17.272800181815235 -0.02046014806350427 8.596405282512558 1.000021515147181 1.0977634552555768 0.010559594276373208 0.23949709313600684 0.0 0.0 0.2390320327606129 0.05634039042861148 0.953981278508365 0.02046014806350427 0.09774194010839587 IIVDELKQEVISTSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIVDELKQEVISTSSK 16 1 P63244;J3KPE3;H0YAF8;H0Y8W2;D6RAC2;D6REE5;H0YAM7;D6RF23;H0Y9P0 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ; 216.93 1.3431e-14 626150000.0 1130690.0 1074550.0 928810.0 1010880.0 1049260.0 1265570.0 1365290.0 1248920.0 1984790.0 1452840.0 False True 1124602.4906714691 1110315.7471708092 1059578.3746387553 1138857.304352138 1182877.0415487357 1178084.1247313323 1299245.706785716 1342120.752287259 1495665.0993234122 1360118.507361097 0.8268415469571279 0.8163375037996098 0.7790338627878464 0.8373221143514544 0.8696867479906252 0.8661628515128817 0.9552444877075553 0.986767509612999 1.099657927767855 1.0 20.3753009285451 2.126947916161578 1.0233402331830885 1.047730442868131 0.8147680468504167 0.8904530836177195 0.031967007406821596 0.1541399060874883 0.30165353540791195 0.023513176265841658 0.012127837802088206 133.951603302391 -2.126947916161578 -0.2329623960177144 IIVEKPFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IIVEKPFGR 9 1 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 121.83 0.00054982 5623600000.0 10228600.0 14135500.0 14748400.0 13776000.0 14172700.0 11748000.0 11893000.0 11024700.0 10051300.0 12692700.0 False True 10173530.354104297 14605991.572409801 16824846.524609152 15520040.187514894 15977509.336825734 10935888.411817372 11317690.15432801 11847419.096292254 7574291.795519625 11882641.019232815 0.856167441029127 1.2291873118752867 1.415918102497337 1.3061103303882289 1.344609275914766 0.92032473202859 0.9524557828524486 0.9970358506258371 0.6374249447795443 1.0 23.502352187378452 2.726415929801939 23.852755892631542 0.9134998004468962 1.2448440571378516 0.483991319050176 0.169271874412227 364.3740327038458 715646.4396397806 0.055489944927465805 0.05272182570472541 532.6181107763289 -2.726415929801939 0.33134425669095546 IIWELIK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIWELIK 7 0 O75874;C9J4N6;C9JLU6;C9JJE5 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ; 123.96 0.009755 448770000.0 618190.0 690250.0 706080.0 598380.0 588280.0 677300.0 707930.0 644220.0 929740.0 653030.0 False True 614861.7337273656 713224.5539850632 805489.9266426205 674134.8466467162 663193.9709912605 630479.845192705 673684.7213447773 692294.9676828753 700618.0348777187 611353.0663128896 1.0057391834732048 1.1666328236260715 1.317552771102602 1.102693163399781 1.0847969978968566 1.0312859784856734 1.1019568862356641 1.1323979641717539 1.1460121384573925 1.0 19.22164627494977 3.5084110152947257 24.979786647979523 1.09133564107806 1.171387756042116 0.15881060639859934 0.0809973026463806 1196.2027312040548 954970.2726622754 0.0217612285913177 0.03367245927075271 3224.1186463090967 -3.5084110152947257 0.08005211496405606 IIYDS(ph)DSES(ph)EETLQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 IIYDSDSESEETLQVK 16 0 P35251-2;P35251;D6RAD2;E0CX09 P35251-2 RFC1 Replication factor C subunit 1 2 IIYDS(1)DS(0.437)ES(0.561)EET(0.003)LQVK 119.56 0.0015414 0.0 67130.0 91406.0 69086.0 57117.0 68798.0 95230.0 85387.0 87085.0 108210.0 90528.0 True False 66768.57953884419 94448.39345390619 78812.7082937231 64348.00634366207 77559.01750230619 88646.97424730747 81256.50459998373 93583.72490866987 81543.09543971211 84750.42553507983 0.7878258913426622 1.114429725368307 0.9299387914117435 0.7592646991138373 0.9151460539888737 1.0459767451033597 0.9587740012744844 1.104227197890986 0.9621555871239826 1.0 16.370932991642775 2.7621002089636617 10.381280130695966 1.0228958180595966 0.9068063176954326 0.24786727751434812 0.09752397424425283 0.8879086289656708 386.02343529318966 0.030227996910879695 0.03170521136146602 578.2294524848912 -2.7621002089636617 -0.11608950036416399 IIYIVHDEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 IIYIVHDEVK 10 0 P25788-2;P25788;G3V4X5 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ; 182.71 1.7481999999999996e-06 1722480000.0 4005900.0 3989300.0 4057000.0 3157400.0 2247500.0 3419800.0 4261900.0 3107700.0 6975200.0 3831000.0 False True 3984332.679497326 4122081.438917224 4628190.335923845 3557126.516264482 2533705.803023827 3183397.275343296 4055735.61496095 3339612.3545808517 5256255.42289141 3586502.300115885 1.1109243340980393 1.1493318821471363 1.2904467775677437 0.9918093503382239 0.7064559258590073 0.8876049724659136 1.1308331280952764 0.9311613586510021 1.465565886496594 1.0 21.77414612533249 3.714242580176743 23.156974473014344 0.9984040310900965 1.1801440770006386 0.1371925579273089 0.1886167738237493 543.4265708472889 517480.30361052783 0.050770476248746456 0.07871283019995093 5178.9602795778255 -3.714242580176743 0.18174004591054216 IKADPDGPEAQAEACSGER ddPTM_BT-474_Trastuzumab_2h_R1 3 IKADPDGPEAQAEACSGER 19 1 D6RC52;D6RCB9;Q9NX24;J3QSY4 D6RC52 NHP2 H/ACA ribonucleoprotein complex subunit 2 0 ;; 148.66 8.5058e-08 1889590000.0 645300.0 630977.0 609914.0 533532.0 646905.0 719531.0 709959.0 647134.0 904490.0 721833.0 False True 641825.7764995698 651978.6880113485 695784.589732477 601077.0964957315 729284.5172436606 669791.5155637852 675615.5708632435 695426.4251598679 681590.5590450539 675764.9999476768 0.9497765888278693 0.9648009116509881 1.0296250764486918 0.8894765140873999 1.0791984155736503 0.9911604117047286 0.999778874187854 1.029095062948974 1.0086206878098571 1.0 19.366162105036885 3.2300491023091022 24.999999540519326 1.0175966552461972 0.9639616566308044 0.35270803270062734 0.03923672707040054 217.67584921421403 639356.6817578546 0.010711255969512109 0.012993737554587442 1698.4356705563923 -3.2300491023091022 -0.05363499861539289 IKAEYEGDGIPTVFVAVAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKAEYEGDGIPTVFVAVAGR 20 1 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ; 191.78 1.2204e-17 1726730000.0 3979100.0 4364300.0 3986500.0 3998300.0 4097300.0 4957600.0 4885400.0 4507000.0 6529900.0 4959400.0 False True 3957676.9677195726 4509563.087224942 4547764.548720836 4504484.370045062 4619066.868400234 4614892.780935121 4649074.537959648 4843335.226082276 4920693.641177117 4642886.846044042 0.8524172780759668 0.9712842971969695 0.9795122516491533 0.9701904266486905 0.9948695760991668 0.9939705476275448 1.0013327251171065 1.0431732210335958 1.0598349269204739 1.0 22.14659069006498 6.632962251980666 0.47430397279656417 1.0242155958674535 1.9158652856605308e-18 0.7915697008283968 0.024003091324333183 11.91199124933284 0.4851172217149313 0.014456119715867074 10.002256667278562 4294990.939287878 -6.632962251980666 -1.0242155958674535 IKDAFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 IKDAFDR 7 1 P52209-2;P52209 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 105.81 0.007153399999999998 2090720000.0 3445580.0 3246490.0 3049750.0 2688650.0 2918170.0 3854010.0 3838280.0 3529560.0 4484080.0 3790090.0 False True 3427029.3801199254 3354547.4571053525 3479128.291097796 3029032.814326502 3289781.6521512973 3587591.3600636856 3652607.7327465042 3792953.689942519 3379038.5675936113 3548203.211340697 0.9658492414319794 0.9454214590595077 0.9805324227140867 0.853680760066156 0.9271683317450822 1.0111008717305414 1.0294246172463042 1.0689787095112127 0.9523238569858669 1.0 21.75865720680929 2.6913480477693255 5.034964336682803 1.0232973603997182 0.9331065076855138 0.45399630781030886 0.04193522112387648 0.1734987003967599 10.340464447053979 0.014075221647412008 0.01345418232812455 491.30145212658675 -2.6913480477693255 -0.09019085271420435 IKDAFDRNPELQNLLLDDFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKDAFDRNPELQNLLLDDFFK 21 2 P52209-2;P52209 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ; 229.59 6.9628e-26 1214460000.0 2248640.0 2021380.0 1849070.0 1878770.0 1821370.0 2455000.0 2652400.0 2350480.0 3945800.0 2575000.0 False True 2236533.572087389 2088660.4113499857 2109402.983595442 2116622.0893653743 2053310.6733942206 2285291.628448382 2524093.2788480297 2525884.7530956003 2973410.4610111457 2410661.2954315846 0.9277676529364856 0.8664263267959631 0.8750308421979257 0.8780255000470449 0.8517624094622605 0.9479936616476197 1.047054301502832 1.047797447896299 1.233441822227793 1.0 21.200997531866552 2.215105685467979 1.6459257864916217 1.1018864829447659 0.8777075740152299 0.7295336640368688 0.05853532729526734 0.1835645035746926 0.9810477272106705 0.030696866271726988 0.018406910919619303 164.09890589461074 -2.215105685467979 -0.22417890892953596 IKDCPWYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKDCPWYDR 9 1 O95639;C9K0K2;B7Z7B0;H7C016;O95639-3;O95639-2;H7C419 O95639 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 0 ; 109.24 0.0022635000000000003 1838730000.0 1969400.0 2176730.0 2042590.0 1913980.0 1911220.0 2323450.0 2146030.0 2004120.0 2771320.0 2397970.0 False True 1958796.9692209077 2249181.142188927 2330168.9174894486 2156289.6717552114 2154602.5383115453 2162835.3703129906 2042218.3302692815 2153677.6111151543 2088365.3197854448 2244929.5015945937 0.8725427537165672 1.0018938860179412 1.0379697517602706 0.9605155396744438 0.9597640089727145 0.9634313098815392 0.9097026560605468 0.959352001737862 0.930258753471795 1.0 21.098238709481315 2.982635992839192 2.0555367034994685 0.9471802687617275 0.9753097879271856 0.01399019986586858 0.04496780128783943 0.9526729438643858 8.085603178403563 0.015065518681149255 0.017485937676449664 960.8066335525531 -2.982635992839192 0.02812951916545814 IKDEDHS(ph)PTFENSDCTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKDEDHSPTFENSDCTLK 18 1 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 IKDEDHS(0.744)PT(0.256)FENSDCTLK 149.32 3.8049e-08 685460000.0 454490.0 411070.0 388920.0 403170.0 390260.0 446530.0 504980.0 391560.0 615680.0 520480.0 True False 452043.0763385865 424752.21645293717 443676.5554467589 454211.2806620491 439957.29774775443 415662.43211855646 480552.1881890657 420780.19550139265 463953.9136893264 487262.520794653 0.9277197753715415 0.8717112405038443 0.9105493168717106 0.9321695416288077 0.9029163520113331 0.8530564416090789 0.9862285065663501 0.8635595342222556 0.9521641700098056 1.0 18.894339732175016 0.9982283364592396 8.273035052348126 0.9999954402257635 0.9059581306437324 0.4018209619460402 0.03661177669324597 0.08183255399261463 63.74687830909753 0.03214680070760376 0.00804872369045376 9.959289034150608 -0.9982283364592396 -0.09403730958203105 IKDEFQFLQAQYHSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKDEFQFLQAQYHSLK 16 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 0 ; 126.25 4.3665e-05 828660000.0 1025310.0 1159570.0 1228040.0 1254310.0 1060410.0 1201560.0 1310970.0 1060580.0 1427850.0 1229280.0 False True 1019789.8448826512 1198165.5864751316 1400937.35768497 1413105.517392697 1195446.9279575069 1118498.985367999 1247553.3727082664 1139725.865116117 1075975.4997097584 1150826.2979604437 0.8861370709810661 1.0411350423592032 1.2173317208407441 1.2279051320751695 1.0387726888724582 0.9719094769994943 1.0840501080999345 0.9903543802709415 0.9349590825450028 1.0 20.13423866345251 3.0099905880608695 24.999859795099752 1.0028231088140258 1.1026669727778646 0.18085951565700853 0.09582610347241283 373.40323319129266 934375.3622488821 0.029537557347421122 0.0352683788346633 1023.2708159294632 -3.0099905880608695 0.09984386396383882 IKDHIQNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKDHIQNGK 9 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 123.86 0.00032799 2289500000.0 4797500.0 4805800.0 5065000.0 4597000.0 4521000.0 5960000.0 5814700.0 5594900.0 7791900.0 5976200.0 False True 4771670.793052364 4965758.147832554 5778107.974230785 5178979.728658966 5096722.551933586 5547999.22833091 5533420.746688902 6012419.848326542 5871690.651110743 5594793.799517772 0.8528769717060252 0.8875676791270777 1.0327651351027116 0.9256783921340146 0.9109759420218282 0.9916360507887001 0.9890303280106302 1.0746454764507616 1.0494918778984914 1.0 22.41565352985648 2.321721490308741 1.6029251283885761 1.0465089729403767 0.9260752745574063 0.5212649244588698 0.048373636176252705 0.3085343733977238 1.5955005797891249 0.025866687963670188 0.017130963351239658 209.75942812232446 -2.321721490308741 -0.12043369838297036 IKDIAWTEDSKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKDIAWTEDSKR 12 2 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 182.57 9.3968e-06 2528000000.0 2601100.0 2497200.0 2324600.0 2197100.0 2397500.0 3048400.0 3292300.0 2771600.0 4577200.0 3242200.0 False True 2587095.9666093793 2580317.7924107234 2651883.4742145883 2475252.6347262636 2702807.413904174 2837671.2831617314 3133038.871192642 2978430.865899632 3449210.3913376797 3035280.020212928 0.8523417771609395 0.8501086473826265 0.8736865977948737 0.8154939966799578 0.890463942669306 0.934896043944791 1.0322075229727425 0.9812705404658818 1.1363730424765601 1.0 21.53339818799201 2.460354601129596 1.3576733504167977 1.0419039768365792 0.8485507914253583 0.812443749477584 0.041176874985931776 0.1726556643540523 0.6429224117106607 0.02061645019273645 0.014977791021951323 288.63872743697686 -2.460354601129596 -0.19335318541122093 IKDLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKDLHK 6 1 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ; 74.743 0.047781 2973500000.0 9079600.0 8056900.0 8162200.0 7176800.0 6799700.0 9124900.0 9388600.0 8830500.0 11978100.0 8979000.0 False True 9030716.442438401 8325069.046001099 9311366.812885797 8085382.14414612 7665601.49002052 8494117.140704134 8934437.550065089 9489476.750370419 9026257.753316836 8405952.532691348 1.0743239873550678 0.9903778320927119 1.1077110864798758 0.9618638830877873 0.9119253838525081 1.0104883542549055 1.0628703309135312 1.128899635521991 1.0737935669054848 1.0 23.002979879127867 2.1659820255757416 4.289478874693082 1.0845644668720398 1.006310111713751 0.1611895639206007 0.059473730808478106 0.3012065063284842 10.681455221991577 0.023812391008046892 0.017375902597681188 146.54871866426632 -2.1659820255757416 -0.07825435515828882 IKDMDLWEQQEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 IKDMDLWEQQEEER 14 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;; 256.8 2.2998e-24 3073710000.0 1875680.0 1805270.0 1779310.0 1652880.0 1766030.0 2031360.0 1951370.0 1814010.0 2465010.0 2085150.0 False True 1865581.5472876397 1865357.3206412382 2029821.381960231 1862134.438526395 1990923.4524200985 1890936.864507091 1856974.7781426935 1949380.6375561343 1857541.3149417306 1952073.94181327 0.9556920500433052 0.9555771841862295 1.03982812253246 0.9539261800691162 1.019901659345312 0.9686809623361965 0.9512830115532204 0.9986202857384419 0.9515732345754645 1.0 20.89657627051746 2.7303699862946056 0.0012191891407497453 1.864164935932556 0.09599464033793753 0.013111934626907962 0.03069000835829916 1684218.8286268986 775.7380878465428 560598.81423501 564433.7388818813 537.4895020817114 -2.7303699862946056 -1.7681702955946186 IKDPDASKPEDWDER ddPTM_BT-474_Trastuzumab_2h_R1 9 IKDPDASKPEDWDER 15 2 P27797;K7EJB9 P27797 CALR Calreticulin 0 ;;;;;;;; 140.81 2.7412e-06 92143620000.0 68774280.0 56187140.0 50292590.0 43099290.0 43007630.0 68970860.0 69164210.0 65146700.0 102813790.0 63168850.0 False True 68404006.91802077 58057294.98905668 57373349.52097127 48555655.69493025 48484396.754305474 64203066.78814081 65818472.929359816 70008277.56223969 77476709.08870281 59137359.91142658 1.1566970020385317 0.9817363351359009 0.970170964799623 0.8210656642037257 0.8198606908885235 1.085660010597386 1.1129761799975502 1.1838248725863838 1.3101144387362595 1.0 25.817566502399046 2.4598995592854305 3.3647307449846644 1.1660755895330703 0.9454139698938097 0.40701610272657673 0.1144154208811185 0.23190567961422698 5.54042627043348 0.04262918631403725 0.03642139030439675 288.336458079 -2.4598995592854305 -0.22066161963926068 IKDQYK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKDQYK 6 1 Q00341;A0A024R4E5;Q00341-2;H0Y394 Q00341 HDLBP Vigilin 0 ; 72.234 0.078556 1540730000.0 3044800.0 2499300.0 2994400.0 2071230.0 1930300.0 2523600.0 2883700.0 2572000.0 4007400.0 2782100.0 False True 3028407.1351090795 2582487.689641244 3415985.492208619 2333447.505632003 2176112.263215524 2349149.471915415 2744204.414196224 2763935.700351366 3019829.9664088553 2604543.996124354 1.1627398652568155 0.991531605334396 1.3115483928440894 0.8959140291368656 0.8355060488337497 0.901942710666829 1.0536218310305716 1.0611975472344455 1.1594467096361052 1.0 21.312599376715852 3.717818542459682 24.899294387542405 0.9882216202246834 1.1388991673410984 0.31065701220116115 0.1142101518054992 1049.6584372416087 1260035.311646531 0.03235729286255437 0.05018473144191962 5221.779662700319 -3.717818542459682 0.150677547116415 IKEDEDDKTVLDLAVVLFETATLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKEDEDDKTVLDLAVVLFETATLR 24 2 P14625;H0YIV0 P14625 HSP90B1 Endoplasmin 0 ; 190.37 6.7462999999999985e-18 2138840000.0 1449990.0 994800.0 893290.0 906790.0 843540.0 1321870.0 1410980.0 1359260.0 2635800.0 1216470.0 False True 1442183.414949033 1027911.3166307 1019057.4673841286 1021589.5210247261 950959.818946706 1230492.2382472756 1342725.5069329655 1460694.8833824256 1986242.407910483 1138833.8431276362 1.2663685959562745 0.9025999032551543 0.8948254159583457 0.8970487900316378 0.8350294686844199 1.0804844320993423 1.179035480053325 1.28262335387825 1.744102021463962 1.0 20.119125841232236 2.0463586561225062 1.757325033836871 1.3790930870909 0.9530345940195551 0.39735812294740136 0.20307517561042307 0.32671869131525766 1.9013015057787546 0.11677096658186202 0.06075442160606839 111.2650214840421 -2.0463586561225062 -0.4260584930713448 IKEEEPDPEEWQLS(ph)GDSTLNTNDLTHLR ddPTM_BT-474_Trastuzumab_2h_R1 3 IKEEEPDPEEWQLSGDSTLNTNDLTHLR 28 1 A0A494C1G8;A0A494C0Z6;H0Y6K5;A0A494C070;H0Y7L6;Q02447-4;Q02447-3;Q02447-5;Q02447-6;Q02447-2;Q02447 A0A494C1G8 SP3 Transcription factor Sp3 1 IKEEEPDPEEWQLS(1)GDSTLNTNDLTHLR;IKEEEPDPEEWQLS(1)GDSTLNTNDLTHLR;IKEEEPDPEEWQLS(1)GDSTLNTNDLTHLR 274.53 9.927599999999994e-62 449300000.0 338572.0 381137.0 359975.0 344402.0 363489.0 500770.0 469720.0 441270.0 669180.0 432000.0 True False 336749.1659708851 393822.9146428182 410656.3510412101 388003.2578876674 409777.1695819034 466152.94858578243 446997.84909534705 474199.8081236571 504269.5555525971 404429.3901461923 0.8326525573454434 0.9737742217509463 1.0153969049894394 0.9593844249237494 1.0132230237613988 1.1526188747491335 1.1052556020564361 1.1725156966269052 1.2468667407438287 1.0 18.625528317072078 3.0535234630512806 0.9477481390331225 1.157826681504155 0.9237776701862007 0.5968643344522901 0.07338360004406301 0.3591212027464365 0.707665890904513 0.03488661518549463 0.046301481542323324 1131.1584992811302 -3.0535234630512806 -0.2340490113179542 IKEEEPDPEEWQLSGDSTLNTNDLTHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKEEEPDPEEWQLSGDSTLNTNDLTHLR 28 1 A0A494C1G8;A0A494C0Z6;H0Y6K5;A0A494C070;H0Y7L6;Q02447-4;Q02447-3;Q02447-5;Q02447-6;Q02447-2;Q02447 A0A494C1G8 SP3 Transcription factor Sp3 0 234.95 2.5550999999999997e-45 89046000.0 137960.0 149010.0 139710.0 130610.0 139110.0 168800.0 169820.0 167720.0 227100.0 167160.0 False True 137217.23868879708 153969.70777155287 159379.95361891054 147145.21260825492 156824.83393043128 157131.25331245907 161605.15782460137 180236.11806490333 171134.24798409225 156491.70568712387 0.8768339388103896 0.9838841432234545 1.0184562365085417 0.9402748341336663 1.002128727793238 1.0040867828906783 1.0326755473398757 1.1517295263255165 1.093567529554847 1.0 17.255726668456294 2.2006841635221437 2.0782612482947527 1.0970070595364927 0.9689560608644469 0.4781896673316225 0.051652295646412036 0.24143201487665067 2.0917600304852617 0.024668797274931438 0.015759531496148768 158.73919132516772 -2.2006841635221437 -0.12805099867204583 IKEEGY(ph)KK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKEEGYKK 8 2 Q4G0S7 Q4G0S7 CCDC152 Coiled-coil domain-containing protein 152 1 IKEEGY(1)KK;IKEEGY(1)KK 63.419 0.059173 1782620000.0 1456500.0 2278380.0 2088220.0 1869620.0 2036840.0 2315510.0 2527610.0 2217220.0 2150630.0 2304100.0 True False 1448658.3658323637 2354214.5009902064 2382223.2248663763 2106313.700303542 2296219.5007034694 2155444.2438242417 2405339.8478921275 2382680.215215029 1620636.0534655584 2157050.3653607448 0.6715922767014716 1.0914045118257996 1.1043892452033561 0.9764786831721857 1.0645182595536893 0.9992554084214744 1.1151060200163008 1.1046011041177288 0.7513204510616625 1.0 21.040628431964347 4.744007483103633 24.798062504465534 1.0352948384713816 0.6715921042758367 0.5073719107291809 0.1032448026695361 403.1636141796184 1835429.1086371234 0.023585283557563477 0.2034216104076241 55463.5269509092 -4.744007483103633 -0.3637027341955449 IKEELIAQGLLESEDRPAEDS(ph)EDEVLAELR ddPTM_BT-474_Trastuzumab_2h_R1 3 IKEELIAQGLLESEDRPAEDSEDEVLAELR 30 2 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 IKEELIAQGLLESEDRPAEDS(1)EDEVLAELR;IKEELIAQGLLESEDRPAEDS(1)EDEVLAELR;IKEELIAQGLLESEDRPAEDS(1)EDEVLAELR 262.38 1.1362e-58 231875000.0 190642.0 188924.0 177908.0 149660.0 165535.0 222866.0 214305.0 200339.0 268878.0 240633.0 True False 189615.60465431746 195212.2211330304 202955.89999594272 168606.94065501448 186614.9010471854 207459.7979901335 203938.2484253984 215289.31348082918 202616.61968061115 225275.59592372374 0.8417050407826668 0.8665484618188624 0.9009227083108537 0.748447429308336 0.8283848957628394 0.9209155440892829 0.9052833600957382 0.9556708199929662 0.8994166405366665 1.0 17.78133150950695 2.6729409556276025 4.483502976219318 0.9343872782673688 0.8373963096909557 0.5543220197478673 0.0444933136855753 0.18133120958978505 7.270581500358029 0.014869255113140687 0.014136899041335332 470.91329917224067 -2.6729409556276025 -0.0969909685764131 IKEEPMEVDIQDSHVSIS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKEEPMEVDIQDSHVSISPSR 21 1 A0A494C0H4;H0Y9M2;Q17R98-2;Q17R98;H0Y9K9;G5E9Z1;A0A590UJE4;Q17R98-3;A0A5F9ZGT0 A0A494C0H4 ZNF827 Zinc finger protein 827 1 IKEEPMEVDIQDSHVS(0.389)IS(0.597)PS(0.014)R 151.31 3.8136e-08 165270000.0 142270.0 120310.0 115360.0 131070.0 99073.0 149730.0 129760.0 119470.0 185750.0 146520.0 True False 141504.03412768288 124314.44562106919 131601.6852729048 147663.44856109028 111689.35929832236 139379.51752650773 123483.01306866249 128385.45805636773 139974.4014224798 137168.96815791706 1.0316038388855928 0.906286948794067 0.959412956445055 1.0765076864257763 0.8142465515213247 1.01611552086654 0.9002255738083669 0.9359657638348841 1.0204523902325557 1.0 17.065594610842446 1.2354119532625485 24.993749975830575 1.0102262194401066 0.9514984733752653 0.0867252305065237 0.07088277327026095 190.44074144308274 1511568.5988042057 0.05449026772045769 0.015853568656299763 17.195386950398877 -1.2354119532625485 -0.058727746064841324 IKEEPVS(ph)EEGEEDEEQEAEEEPMDTSPSGLHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSK 33 1 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 1 IKEEPVS(1)EEGEEDEEQEAEEEPMDTSPSGLHSK;IKEEPVS(1)EEGEEDEEQEAEEEPMDTSPSGLHSK 263.57 7.538199999999996e-60 783120000.0 81443.0 80382.0 77405.0 72047.0 76168.0 108648.0 102464.0 104433.0 143904.0 112165.0 True False 81004.51993716802 83057.46627805496 88302.95118367884 81168.14281285465 85867.54331689392 101137.41948988196 97507.4248695086 112226.32076002873 108440.78741480764 105006.5336707122 0.7714236162788537 0.7909742696441455 0.840928160342729 0.7729818324199534 0.8177352428960674 0.9631535863000361 0.9285843600483004 1.068755598694048 1.0327051434234067 1.0 16.680119571862267 2.5066216349971246 1.287256725466673 1.0339294143812936 0.7917655185510277 0.8878283414422713 0.03602338460105866 0.12896232872861246 0.43289061769744375 0.018575483937602742 0.01395958117433031 321.0861960231777 -2.5066216349971246 -0.24216389583026587 IKEEVLS(ph)ESEAENQQAGAAALAPEIVIK ddPTM_BT-474_Trastuzumab_2h_R1 4 IKEEVLSESEAENQQAGAAALAPEIVIK 28 1 Q9UJX5;Q9UJX5-3 Q9UJX5 ANAPC4 Anaphase-promoting complex subunit 4 1 IKEEVLS(0.651)ES(0.349)EAENQQAGAAALAPEIVIK;IKEEVLS(0.713)ES(0.287)EAENQQAGAAALAPEIVIK;IKEEVLS(0.724)ES(0.276)EAENQQAGAAALAPEIVIK;IKEEVLS(0.5)ES(0.5)EAENQQAGAAALAPEIVIK 251.68 1.2057e-53 2733800000.0 1474670.0 1168420.0 1111630.0 942610.0 993680.0 1508020.0 1489560.0 1365060.0 2010680.0 1489640.0 True False 1466730.5405712412 1207310.1533751953 1268137.8415388293 1061944.3293520182 1120219.2579972052 1403774.1268972426 1417504.2921282137 1466927.7088342293 1515174.8557316372 1394569.8998550316 1.0517440113426446 0.8657222226728812 0.9093397481694211 0.7614851930063954 0.8032722189928625 1.0066000471135708 1.0164454949698585 1.0518853941897923 1.0864818291927445 1.0 20.41138881752824 2.5920545960710695 5.15932668169652 1.0395963692918575 0.8733726782538185 0.519801059217581 0.07431874084861681 0.18529527193439427 7.16252701325856 0.025346565896083383 0.023717962566668815 390.8900323103986 -2.5920545960710695 -0.16622369103803902 IKEEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKEEYK 6 1 Q5VWI1 Q5VWI1 TCERG1L Transcription elongation regulator 1-like protein 0 89.55 0.045636 1005500000.0 1283500.0 1365000.0 1065600.0 1171600.0 1650500.0 2885100.0 2786400.0 2822100.0 3929300.0 3020200.0 False True 1276589.778610255 1410433.1998400746 1215627.2176387622 1319924.439873146 1860681.3917200589 2685659.82779488 2651611.1869183206 3032699.4323334335 2960976.6649224763 2827448.2502766927 0.4514989013451718 0.4988360793878545 0.42993791929518127 0.46682532199978505 0.6580779653661119 0.949852867344986 0.9378106873074813 1.0725923744268901 1.0472257678395056 1.0 21.431069188675465 2.8435129867140465 1.7240189797918921 1.0274849682353486 0.45456840794185904 0.9805848756142788 0.03615739504905655 0.044297198583549094 0.2630022096067862 0.01384628630459065 0.014609789315769178 697.4498524227307 -2.8435129867140465 -0.5729165602934896 down IKELEQEREDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKELEQEREDQK 12 2 O75940 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 0 173.72 1.8175e-05 152600000.0 178700.0 152260.0 121820.0 138960.0 152960.0 214740.0 225760.0 199400.0 360740.0 227500.0 False True 177737.89905543654 157327.88205688618 138971.1971215783 156552.32175211006 172438.54933504973 199895.52924358705 214839.12631304935 214280.24053268373 271840.4606683463 212980.75522745104 0.8345256305698739 0.7386952961495004 0.6525058894319591 0.7350538389486003 0.8096438063190048 0.9385614631242634 1.008725535241969 1.0061014212474029 1.2763616148230696 1.0 17.70036354999467 2.461330119502214 1.1210025144473736 1.100255136443429 0.7302936660201516 0.7765762296061063 0.08229807723518945 0.22443435835460415 0.5669760815882423 0.04886375409797261 0.034212913493428976 289.2878005112216 -2.461330119502214 -0.3699614704232774 IKELEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKELEQK 7 1 O60925 O60925 PFDN1 Prefoldin subunit 1 0 ; 90.71 0.028674 0.0 848960.0 724050.0 678630.0 636640.0 696850.0 893150.0 851910.0 765390.0 1249010.0 888270.0 False True 844389.2936883239 748149.5665525323 774175.2052422969 717238.5587238299 785589.7169464543 831408.6427489511 810699.8586877645 822507.2883716683 941208.2213765349 831579.8481137925 1.015403746980625 0.8996725548959627 0.930969175116855 0.862501130048649 0.9446954717918501 0.9997941203538906 0.9748911791532846 0.9890899716212427 1.131831445304265 1.0 19.665495271860415 1.9981737050039745 1.0483889746236505 1.050578241330087 0.9278562019752081 0.4405613115386898 0.05227889397847097 0.4778704959586573 0.967377710033157 0.040790456886825754 0.019089623005059835 99.58036298378211 -1.9981737050039745 -0.12272203935487891 IKELQNAGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKELQNAGDR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 111.94 0.0015388 551340000.0 610440.0 628350.0 584260.0 614880.0 601720.0 775840.0 791190.0 669360.0 980100.0 787090.0 False True 607153.4588662604 649264.2499044043 666518.7295210426 692723.7449549328 678345.4753261397 722208.0069309147 752917.1170606903 719311.0421412097 738567.4876671461 736857.2423383482 0.823977052786392 0.8811262380268182 0.9045425507468816 0.9401057696829282 0.920592804616364 0.9801193032168002 1.0217950965255869 0.9761877889108381 1.0023209995512437 1.0 19.491025615168265 4.814341228046757 0.38981435245150053 1.0087697203800081 0.6830623279989388 0.9084607339946505 0.01800061069249987 1.722699673215725 0.19887850113955566 0.015500538359414845 0.26821958568115006 65214.05839889373 -4.814341228046757 -0.32570739238106927 IKELVK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKELVK 6 1 C9J384;Q9BQ75-2;Q9BQ75 C9J384 CMSS1 Protein CMSS1 0 ; 108.09 0.077296 0.0 7366000.0 6339000.0 5838400.0 5054800.0 5629700.0 6956100.0 6496300.0 6814200.0 9016500.0 7088400.0 False True 7326342.274439537 6549989.782993573 6660395.971717473 5694737.161719679 6346608.925153841 6475241.179898086 6182049.1507240515 7322710.205806481 6794504.389910036 6636012.243315438 1.1040278416935532 0.9870370250735271 1.0036744550052026 0.8581565182397123 0.9563889716368265 0.9757729405066575 0.931590980253439 1.103480514699587 1.023883642884211 1.0 22.661885117365113 1.7448772148619716 24.999999999973962 1.0503142287365397 0.9704219534398564 0.1955214353133854 0.0629491927382117 1.8399076463854962 7306.1281642541035 0.029452977665687614 0.016333104104625473 55.57471124393641 -1.7448772148619716 -0.0798922752966833 IKENSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKENSEK 7 1 P17980;E9PKD5;E9PLG2;R4GNH3;E9PN50;E9PMD8 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 ; 88.948 0.016628 645470000.0 738840.0 603140.0 536580.0 526610.0 562230.0 492240.0 659150.0 622310.0 966800.0 727570.0 False True 734862.1675328406 623215.150294171 612125.7999630312 593278.7720054603 633826.6579017069 458212.6074083227 627264.3963024734 668749.9322261495 728545.0944562774 681135.859695985 1.0788775206474015 0.9149645278877754 0.8986838546956617 0.8710138565751944 0.9305436630287034 0.6727183731199223 0.9209093712705768 0.981815775379432 1.0696031989586525 1.0 19.377583062043932 1.6394647633464288 3.2068426480864893 1.0312703660954086 0.8900350120745169 0.25857976414136463 0.09434309004682646 0.27256370680364045 6.620731033723411 0.05984258430218493 0.025677055001250938 43.597818930351515 -1.6394647633464288 -0.1412353540208917 IKEPLYYWQQTEDDLTVTIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKEPLYYWQQTEDDLTVTIR 20 1 Q96RS6-2;Q96RS6;Q96RS6-3 Q96RS6-2 NUDCD1 NudC domain-containing protein 1 0 94.463 0.0014285 0.0 89486.0 78903.0 75640.0 73333.0 71770.0 82303.0 95167.0 75806.0 116400.0 107190.0 False True 89004.21731882928 81529.23865712933 86289.45452533393 82616.95028099815 80909.48408588204 76613.58733042257 90563.40863675567 81463.02865506831 87714.77968008956 100349.04243002401 0.8869463540809991 0.8124565684219835 0.8598931532954667 0.8232958509654847 0.8062805795312129 0.7634710354495631 0.9024840341641315 0.8117967713730262 0.8740968279917105 1.0 16.614667324440312 0.8772057015243206 3.883123129641663 0.9999841414406412 0.8325586111922191 0.6257714420809825 0.03874462258635759 0.37894814173772007 10.721910401763841 0.03522230052883676 0.009021545719869871 7.5371247154539125 -0.8772057015243206 -0.1674255302484221 IKEWVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKEWVDK 7 1 J3KQ32;Q9NTK5;Q9NTK5-2;C9JCJ9 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 124.23 0.0038 6183200000.0 7773500.0 6650800.0 6203800.0 5940800.0 5616000.0 7690600.0 8034900.0 6844500.0 9844300.0 7535500.0 False True 7731648.339717051 6872167.857506498 7077241.11560373 6692904.670876045 6331164.311360088 7158966.923725113 7646221.190701261 7355271.34566676 7418304.171861735 7054577.938533869 1.0959760324547347 0.974143019948649 1.003212548967114 0.9487321182345617 0.8974547260691084 1.0147973395574874 1.083866569668993 1.0426238691744305 1.0515588936002964 1.0 22.750128341133447 2.4775837924038777 24.997366962497274 1.0488315638913106 0.9798447547105976 0.23941440437864359 0.050476823680966273 22.096161291546256 1194293.080801952 0.017531254290261686 0.014821742372858443 300.3196799175002 -2.4775837924038777 -0.06898680918071298 IKFPLPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKFPLPHR 8 1 Q02543;M0R3D6;M0R1A7;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 0 ; 100.15 0.0037906 1354640000.0 3682700.0 4543400.0 5052500.0 3669400.0 2780500.0 3767800.0 4265700.0 3292000.0 7186800.0 4266200.0 False True 3662872.7523864363 4694624.322456699 5763848.082882737 4133945.663767946 3134580.1936853146 3507340.8544471795 4059351.794443538 3537665.756437281 5415709.4381861435 3993927.463522417 0.9171104848148621 1.1754405570291222 1.4431529204086622 1.0350577724619068 0.7848365355440865 0.8781683910087601 1.016380951211222 0.8857611433226333 1.355985928049328 1.0 21.92937670056205 3.4914469954054392 24.485041494557265 0.9666848190774083 1.1883969444959692 0.17222117508515522 0.18473017519651663 749.7513098772827 1281446.3126841427 0.04941120083926669 0.07337071583046316 3100.608943591753 -3.4914469954054392 0.2217121254185609 IKGDVDVSVPEVEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKGDVDVSVPEVEGK 15 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 105.53 0.0011929 372190000.0 316410.0 275830.0 277530.0 250030.0 237700.0 389910.0 337440.0 316570.0 485230.0 342230.0 False True 314706.48371645575 285010.83480724413 316603.81166599627 281683.7723638467 267969.686041719 362956.43944941316 321116.7380540189 340194.06090988766 365651.56824888225 320388.5884021561 0.9822649592045767 0.8895786089905758 0.9881869177830731 0.8791941491070632 0.8363896085629611 1.1328631935973492 1.0022727078248768 1.061817034765519 1.1412752560022876 1.0 18.289463237199627 2.735843026929663 24.999777653265394 1.0651464571788127 0.9157668002636885 0.6137452880864395 0.060481579665272324 164.90146112329901 1516962.6206719452 0.018773549943256494 0.01842660630993728 544.3058812693644 -2.735843026929663 -0.14937965691512423 IKGDVDVTGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKGDVDVTGPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 121.28 0.00037839 896460000.0 1607390.0 1407190.0 1294650.0 1118630.0 1161510.0 1832050.0 1691950.0 1435630.0 2270940.0 1699250.0 False True 1598735.9908378178 1454027.46848568 1476925.4667004712 1260248.4433042814 1309421.413690859 1705404.6956818188 1610103.9146233315 1542764.0005814282 1711297.2660369622 1590802.4101988836 1.0049871565368966 0.9140214140761178 0.9284154067354126 0.792209287102302 0.8231200841134971 1.0720405530870472 1.0121331878181117 0.9698024032969313 1.0757447028402567 1.0 20.601323222385407 2.734907466109382 24.999305499917412 1.0184371299330406 0.8901614527284102 0.5362023932189837 0.06181365126947549 280.91002286046114 1922321.4555635173 0.020944664054963067 0.02045861572392894 543.1345950189486 -2.734907466109382 -0.1282756772046304 IKGEHPGLSIGDVAK ddPTM_BT-474_Trastuzumab_2h_R1 4 IKGEHPGLSIGDVAK 15 1 P09429;Q5T7C4;B2RPK0 P09429 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 0 ;;; 172.91 6.006100000000001e-07 35350500000.0 41248120.0 39919840.0 36730750.0 33820160.0 36127440.0 49331470.0 47689790.0 44875380.0 67668980.0 50944000.0 False True 41026044.70501694 41248547.742347114 41902120.33059766 38101788.7883409 40728055.339886576 45921301.59268947 45382852.665010534 48224208.728162386 50992866.59687613 47692710.30464725 0.860216256173206 0.8648816030555468 0.8785854287361533 0.7989017303683871 0.8539681448113879 0.9628578728144713 0.9515679099618786 1.011144227705242 1.0691962413364313 1.0 25.507265435452258 2.3552343817277683 1.297577670004361 1.0263805093091163 0.8494072645409396 0.8508321448015851 0.031587490754325064 0.16491769341674326 0.5522820191835156 0.018883609849839302 0.012200993850150797 226.58668294606522 -2.3552343817277683 -0.17697324476817666 IKGS(ph)SPGIQDTLEAEDGAFETDEAPEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 IKGS(0.5)S(0.5)PGIQDT(0.001)LEAEDGAFETDEAPEDR;IKGS(0.5)S(0.5)PGIQDTLEAEDGAFETDEAPEDR 159.78 6.1601e-12 194851000.0 114449.0 81233.0 67086.0 80918.0 79947.0 94336.0 85912.0 89785.0 132415.0 97435.0 True False 113832.81930047924 83936.79129861452 76531.1256780349 91162.21050329045 90127.77656700605 87814.77436305778 81756.10834428905 96485.212618992 99783.09752009514 91216.61488169966 1.2479395277725545 0.9201919124873637 0.8390042294080897 0.9994035694212094 0.9880631580539824 0.9627059113840851 0.8962852705104208 1.0577591894209764 1.0939136214329537 1.0 16.477009011222837 1.6133924952318934 11.75526646923614 1.057331296410095 0.9720761958289774 0.08662458508135129 0.10390714276893033 0.1753802593233307 100.02957349800192 0.05070326788391115 0.026031757240826955 41.05749940219647 -1.6133924952318934 -0.08525510058111752 IKGSEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKGSEADR 8 1 P56192 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ; 123.63 0.0012217 615700000.0 836930.0 1018560.0 907090.0 883300.0 891780.0 801830.0 996830.0 935720.0 1344220.0 1019910.0 False True 832424.0618716647 1052462.1538674764 1034800.3874323795 995125.6894332101 1005342.8970058248 746401.379404794 948609.5246396033 1005548.177889884 1012954.9926251718 954818.4706111181 0.8718139494503949 1.1022641331957714 1.0837666208636183 1.0422145361267403 1.0529152168185114 0.7817207169516424 0.9934972498305978 1.053130211490669 1.0608875129707578 1.0 19.864866949529855 -3.1601484372997253 1.7767352480164695 0.00041040976307959466 1.0086828355807103 0.0 0.0962560710625073 3042344.570150091 361491.1231891122 12854342.516887449 0.026586847565263343 0.0006915945507531667 3.1601484372997253 1.0082724258176308 IKIGDPLLEDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKIGDPLLEDTR 12 1 P49189-3;P49189;P49189-2 P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase 0 60.657 0.08243500000000001 246160000.0 503350.0 667490.0 606570.0 668950.0 535510.0 712650.0 749380.0 585340.0 1015700.0 702090.0 False True 500640.01952744246 689707.0011437736 691969.7835990463 753639.0014110107 603704.0242835551 663386.1828976546 713129.6264903998 629021.0430962943 765394.344682706 657282.0151105094 0.7616822125328797 1.0493319234177017 1.0527745590037252 1.1465991523962524 0.9184855365045305 1.0092869843489007 1.0849675026791974 0.957003278099031 1.1644839309257833 1.0 19.326152984260393 4.739995205635177 24.58196452376223 1.0381148367130024 0.7616820969138303 0.569898265125925 0.07310809799244032 69.81106087903902 1196074.4517188703 0.016614115042985676 0.10443400444333045 54953.4807271468 -4.739995205635177 -0.27643273979917216 IKIIAPPER ddPTM_BT-474_Trastuzumab_2h_R1 2 IKIIAPPER 9 1 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle 0 ; 119.53 0.000741 7883700000.0 1702910.0 3190400.0 2764100.0 3133800.0 3101400.0 2710700.0 2985500.0 2529100.0 4303100.0 3015700.0 False True 1693741.7217710887 3296590.5353624746 3153261.2540121027 3530538.758684247 3496344.9065619977 2523315.689301441 2841079.95928246 2717834.2845095787 3242658.6635858538 2823235.4441293343 0.5999293205577569 1.1676640509091936 1.11689631148866 1.2505293407341165 1.2384177571276722 0.8937673599091603 1.0063205905091026 0.9626665357156351 1.1485611907886295 1.0 21.42891801689103 -0.24814522039481446 11.656353903996498 1.000000528186717 1.0482688727344813 0.004014721700930535 0.18440603789729243 0.0 0.0 0.1736763095751137 0.04093589874400568 0.5647481014578168 0.24814522039481446 0.0482683445477643 IKLDVPEDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKLDVPEDLR 10 1 Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;Q06787-6;Q06787-5;Q06787-8;Q06787-3;Q06787-4;A8MQB8;Q06787-10;Q06787-11;A0A087WXI3;Q8IXW7;A0A087WY29 Q06787 FMR1 Fragile X mental retardation protein 1 0 ; 128.67 0.00029488 536570000.0 1896790.0 2016700.0 1868510.0 1745980.0 1821470.0 2153600.0 2131000.0 1987390.0 2787000.0 2206700.0 False True 1886577.893393179 2083824.6403791057 2131579.966619936 1967020.8889806368 2053423.4078014723 2004726.7010291 2027915.388789456 2135699.133561939 2100181.193886681 2065866.5167490789 0.9132138393733034 1.0086927802374601 1.0318091461079808 0.9521529455233202 0.9939768088370068 0.9704047598311479 0.9816294384695561 1.0338030633860853 1.01661030703552 1.0 20.978315608693883 1.7529474194352055 24.999999999979796 1.019277432131071 0.9812567398250275 0.2351040859460286 0.031071821317159895 6.696445405887941 11652.215967452012 0.014049081322290848 0.007790600583083104 56.61707379039378 -1.7529474194352055 -0.038020692306043435 IKLEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 IKLEAER 7 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 58.916 0.097292 286140000.0 229720.0 286790.0 311740.0 258620.0 235130.0 281020.0 392290.0 305470.0 627070.0 401380.0 False True 228483.21304429162 296335.63178178435 355630.28230734536 291361.26548309403 265072.4117753026 261593.74884992483 373313.4340066709 328265.72254522983 472537.0008075069 375763.58476129366 0.6080504399845906 0.7886225376789333 0.9464202938484896 0.7753845164857666 0.7054233633194968 0.6961657793852057 0.9934795417810929 0.8735964203496803 1.2575380371349427 1.0 18.519465736432014 1.7000699066173455 1.5251975762980239 1.101620357711479 0.7683980804817486 0.5480053512365555 0.12201476815901709 0.2900556360734647 1.31857887970797 0.09551240208417873 0.036297720871195004 50.126791419218094 -1.7000699066173455 -0.3332222772297303 IKLEGIITR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKLEGIITR 9 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 99.283 0.0049475000000000005 333250000.0 407990.0 501540.0 475200.0 413790.0 409580.0 458850.0 459780.0 427380.0 602440.0 491140.0 False True 405793.4271719501 518233.4557126682 542104.0294875553 466175.77157315565 461737.5852291437 427130.7795167176 437538.6848698344 459273.26579166646 453976.7342824155 459795.0247138914 0.8825528884842895 1.1270967014815791 1.1790123867148865 1.0138773725601635 1.0042248402241 0.9289591156026553 0.951595083357185 0.9988652358242684 0.9873459038946836 1.0 18.810631329663348 3.4207762900807914 3.804591675556672 0.9761666485966303 1.0727373079828197 0.19457016051917697 0.07466385145434451 0.3131478661346591 9.318686515641625 0.021099533922050332 0.030002112112711445 2634.9737319003666 -3.4207762900807914 0.09657065938618947 IKNENTEGS(ph)PQEDGVELEGLK ddPTM_BT-474_Trastuzumab_2h_R1 7 IKNENTEGSPQEDGVELEGLK 21 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 IKNENT(0.291)EGS(0.709)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENT(0.001)EGS(0.999)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENT(0.003)EGS(0.997)PQEDGVELEGLK 323.01 2.1082999999999997e-67 3675286000.0 2706880.0 2656770.0 2604900.0 2234040.0 2490294.0 4131370.0 3814600.0 3949650.0 6306260.0 4016190.0 True False 2692306.4588426417 2745198.9833986196 2971647.2778033125 2516869.234938716 2807418.1797710434 3845778.1160988975 3630073.2248128876 4244392.938916318 4752166.722554659 3759873.3157667536 0.7160630778576107 0.7301307126191802 0.7903583520598758 0.669402669601768 0.7466789287815472 1.0228477911667684 0.9654775360623032 1.1288659437321378 1.2639167129984925 1.0 21.8422526222393 2.5064404249051266 1.3849877169220892 1.1268343250848603 0.7216502016702545 0.8246488441386495 0.08005371135976218 0.1612229439521175 0.6265137566588169 0.03948645909051195 0.030183851313587324 320.95225022249355 -2.5064404249051266 -0.40518412341460575 IKNGSNPETTTSGGCHS(ph)PEDTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKNGSNPETTTSGGCHSPEDTPK 23 1 Q08379 Q08379 GOLGA2 Golgin subfamily A member 2 1 IKNGSNPET(0.01)T(0.048)T(0.01)S(0.01)GGCHS(0.92)PEDTPK 65.118 0.017924000000000002 189550000.0 45381.0 48201.0 49971.0 51388.0 54133.0 62548.0 65500.0 56761.0 86603.0 65650.0 True False 45136.67373830311 49805.34114688019 57006.48244428161 57893.71553106967 61026.51667857122 58224.2039821546 62331.51476570126 60996.79404651782 65260.85107074574 61460.16079420717 0.7344053961954065 0.810367895288268 0.9275355239495999 0.9419714296700368 0.9929443055463528 0.9473487089809636 1.0141775413574285 0.9924606974387703 1.0618399012860507 1.0 15.907363920914133 5.81385421076453 0.4891764518306766 1.0153090321767104 4.984200573946796e-09 0.9218751314824596 0.026329653425427514 2.8106227249531157 0.23139102499935937 0.014232287650220988 2.0577244985301713 651409.6842552184 -5.81385421076453 -1.0153090271925098 IKPHLMSQELPEDWDKQPVK ddPTM_BT-474_Trastuzumab_2h_R1 4 IKPHLMSQELPEDWDKQPVK 20 2 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 ;;; 203.81 6.155700000000002e-22 9899880000.0 13400190.0 11897350.0 10923440.0 9269840.0 9262270.0 14071160.0 14860240.0 14605080.0 20386900.0 12805730.0 False True 13328044.86594107 12293346.102650035 12461365.40375747 10443400.793541893 10441765.18272459 13098453.829147752 14141393.419570455 15694985.232693514 15362821.665464064 11988457.347862959 1.111739774285213 1.02543185882389 1.0394469481912791 0.8711213203259647 0.8709848881921343 1.0925887667676157 1.1795840790217496 1.3091747150846955 1.2814677668434642 1.0 23.515142691623115 2.350300788302051 2.9727688104911962 1.2303320367361965 0.9829880690348642 0.4492679046926781 0.10560429888417913 0.20269165464297564 3.6225171259093347 0.04116060003673626 0.032600753515169216 224.02721929811622 -2.350300788302051 -0.24734396770133227 IKPNLSS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKPNLSSSPR 10 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 IKPNLS(0.094)S(0.453)S(0.453)PR 57.175 0.072257 401540000.0 760550.0 938630.0 921020.0 819420.0 744690.0 1174200.0 1097400.0 940630.0 1482800.0 1082700.0 True False 756455.2833050486 969871.7321361834 1050691.6103506503 923158.4879829742 839521.8573765584 1093030.3177694867 1044314.5695248938 1010824.5870223584 1117383.8085020345 1013601.1590538957 0.7463046747214956 0.9568573629507984 1.0365927475175494 0.9107709474648376 0.8282566075202356 1.0783633266458879 1.0303012779697946 0.9972606858163728 1.1023900264133581 1.0 19.951058648639638 2.7279571860864387 24.89213059520815 1.0368638674404187 0.9078093362137888 0.4644522796471183 0.07771637917848691 711.6403977109192 1670611.613644516 0.02558780000507371 0.02434906370047967 534.5116632077585 -2.7279571860864387 -0.1290545312266299 IKPNLSSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKPNLSSSPR 10 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 IKPNLS(0.014)S(0.423)S(0.563)PR 90.434 0.0065609 197150000.0 452730.0 555940.0 583050.0 520060.0 444340.0 579880.0 619420.0 501070.0 850650.0 600190.0 True False 450292.5519830317 574444.1268271729 665138.3720385509 585899.5426770468 500924.06519048125 539794.2604906918 589456.2881858118 538462.3877819048 641018.705626016 561885.3603514893 0.8013957717306421 1.0223511188613768 1.1837617047407525 1.0427385798244244 0.8915058133515465 0.9606839732450435 1.0490685997176994 0.9583136094613104 1.1408353925167665 1.0 19.099916286514247 4.738328746532714 10.158217367388108 1.0234366845290805 0.8009085569976708 0.4079643237832563 0.0816397150727156 0.07392567343107376 280.33712599089006 0.02010490282516712 0.11582381162649573 54743.01926121432 -4.738328746532714 -0.22252812753140971 IKPS(ph)IR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKPSIR 6 1 H7C201 H7C201 GLS 1 IKPS(1)IR 75.38 0.047143 363000000.0 490570.0 526120.0 508780.0 484680.0 413470.0 541280.0 587690.0 487860.0 730840.0 520830.0 True False 487928.82562745106 543631.5861537439 580411.8016049624 546040.4383046401 466122.9536713066 503862.58763606567 559261.1895061835 524266.590502884 550734.2747542666 487590.18349500344 1.0006945220472248 1.1149354612864448 1.1903681026648687 1.1198757825489234 0.9559728014419371 1.0333731167933347 1.1469902562382381 1.0752197403667714 1.1295023841674823 1.0 18.895309555346458 -2.414116828547837 2.2319646292576594 0.2710570871914306 1.0867737916514937 0.12504448591536443 0.06751001959615911 2553104.009536545 604737.4566453376 9794765.765083006 0.01681666689948341 0.003853746749762503 2.414116828547837 0.8157167044600631 IKPVTENLVLSSHTGFCQS(ph)SGDEALSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKPVTENLVLSSHTGFCQSSGDEALSK 27 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;P46100-3;A0A096LP59 P46100;P46100-3;A0A096LP59 ATRX Transcriptional regulator ATRX 1 IKPVTENLVLSSHT(0.001)GFCQS(0.563)S(0.436)GDEALSK 142.87 1.1593e-07 792210000.0 239180.0 318440.0 316430.0 294070.0 291850.0 414780.0 363690.0 394080.0 515410.0 426870.0 True False 237892.28145539635 329039.08289895527 360980.5935411344 331299.2318483239 329015.36756952317 386107.2348870962 346096.9252692808 423488.2506976934 388394.11164016323 399626.7911382064 0.5952861187755654 0.8233659258974978 0.9032942774256928 0.8290215751169391 0.8233065822049377 0.9661695448080342 0.8660503573435023 1.0597093590535445 0.9718920759390267 1.0 18.608293779655725 6.023743350566389 0.3099112178559248 1.0098887848415847 3.182908382525158e-13 0.7112691929173149 0.0665168320933379 9.377517308283606 0.39227684828291065 0.06948649784238614 4.1566731438051825 1056193.1598398557 -6.023743350566389 -1.0098887848412665 IKQEILPEER ddPTM_BT-474_Trastuzumab_2h_R1 4 IKQEILPEER 10 1 O75534-2;O75534;O75534-3;O75534-4 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;; 161.94 6.3101e-06 2709290000.0 3940840.0 4396450.0 4141270.0 4126310.0 4250400.0 4946800.0 4838000.0 4451690.0 5854200.0 5107700.0 False True 3919622.955308488 4542783.180539854 4724324.819435883 4648700.422919902 4791663.245905441 4604839.359514656 4603967.457045236 4783897.713023779 4411510.852260998 4781722.213078022 0.8197094646335393 0.9500307583981626 0.9879965018701512 0.9721811966001904 1.0020789649386639 0.9630085467784826 0.962826206100675 1.0004549615909948 0.9225778193880659 1.0 22.189098890621025 4.733334542691394 3.0133052891519387 0.9770994740412448 0.7951073787587467 0.8067374936821596 0.02288585711507972 0.1391023572637193 1.8838522440078913 0.00520129615086231 0.06045141476589445 54117.1033516199 -4.733334542691394 -0.18199209528249805 IKQHLENDPGSNEDTDIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKQHLENDPGSNEDTDIPK 19 1 O43396;K7ER96;K7EML9 O43396 TXNL1 Thioredoxin-like protein 1 0 ; 160.25 1.9128e-11 971350000.0 1929210.0 1786050.0 1577870.0 1642030.0 1672690.0 2354500.0 2253500.0 2012680.0 3443400.0 2301000.0 False True 1918823.3477153804 1845497.5945599766 1800020.3809080997 1849910.8296388716 1885697.1566896224 2191738.9568968285 2144489.5957940132 2162876.401781956 2594820.2091960516 2154148.2100147884 0.890757348447351 0.8567180224555241 0.8356065625102659 0.858766737143946 0.8753794877821693 1.0174503995162811 0.9955162721971165 1.0040518065222206 1.2045690250710455 1.0 21.0386860831327 2.508523857664416 1.090627651134542 1.068245669168767 0.8523801884908686 0.7140411468822883 0.05756626288935937 0.2729425264655927 0.6578277982057268 0.03363233660064556 0.024622826664351123 322.49564751847237 -2.508523857664416 -0.21586548067789835 IKQSAEQLEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKQSAEQLEDK 11 1 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A087WT27;A0A494C1E2;A0A494C1Q4;J3KN95 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 95.651 0.0033993 0.0 174420.0 184510.0 156030.0 157400.0 169480.0 207520.0 177600.0 186490.0 267130.0 218680.0 False True 173480.9420998838 190651.3038113497 177997.667762928 177326.82386141433 191062.2734133386 193174.63084953502 169008.80950211515 200406.83077703216 201299.39085861127 204723.65517863265 0.8473908007773315 0.9312617227598635 0.8694533497246093 0.8661765232097235 0.9332691585963834 0.9435872502421839 0.8255460726052672 0.9789138954273074 0.9832737241964856 1.0 17.643318285333468 1.6088671651573343 7.711596915500767 0.9879994456129123 0.8921591754083578 0.6017105472988802 0.03697987162279372 0.07849237875609662 10.756469180176527 0.018801418639433104 0.009194026996038987 40.631903198435396 -1.6088671651573343 -0.09584027020455455 IKS(ph)LEEIYLFSLPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKSLEEIYLFSLPIK 15 1 P15880;H0YEN5;E9PQD7;E9PPT0;E9PMM9;H3BNG3;H0YE27 P15880 RPS2 40S ribosomal protein S2 1 IKS(1)LEEIYLFSLPIK 111.57 0.00050392 92812000.0 462210.0 339720.0 347100.0 323140.0 309660.0 460540.0 455290.0 453870.0 733820.0 466840.0 True False 459721.5127163585 351027.37483492366 395968.66295271623 364049.49086770945 349093.36550138285 428703.9537945497 433265.8833232999 487740.0841051615 552979.8936842218 437045.87151816755 1.0518838929182022 0.8031819946395073 0.90601167693734 0.8329777595269569 0.7987568084986965 0.9809129469759307 0.9913510493035042 1.115992887453432 1.2652674003379414 1.0 18.737425184685947 2.045346961699667 1.6769564574524038 1.1430450820095404 0.8774546870603562 0.5556065616580482 0.0934431530641994 0.2492637192278163 1.3191533758164011 0.054822826015350934 0.028109935757312965 111.00612988872896 -2.045346961699667 -0.2655903949491841 IKS(ph)VPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKSVPK 6 1 Q9Y2C9 Q9Y2C9 TLR6 Toll-like receptor 6 1 IKS(1)VPK 72.547 0.051664 2083000000.0 2568500.0 1905800.0 1632800.0 1573000.0 1404700.0 1967200.0 2335400.0 2147300.0 3192500.0 2154900.0 True False 2554671.481387178 1969233.400919572 1862684.047447979 1772141.6387166749 1583580.2186908 1831212.094290697 2222427.779905631 2307542.4297684613 2405751.1523083 2017372.4370972898 1.2663360688435819 0.9761377545898352 0.9233218483584096 0.8784404932519714 0.7849716738319996 0.9077213808500076 1.1016447627803356 1.1438356088024502 1.192517111897212 1.0 20.94404602092613 2.176240737183733 5.995494193040818 1.1256209029823008 0.9443957925466443 0.2587498392991089 0.12533867633526713 0.25654238488889164 17.74219476315208 0.04934007807561475 0.03649109052836472 150.0516368022324 -2.176240737183733 -0.18122511043565648 IKSEHPGLSIGDTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKSEHPGLSIGDTAK 15 1 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ; 216.39 1.3293e-12 3393800000.0 3207500.0 4243900.0 4419200.0 4307300.0 4181500.0 5445000.0 5917700.0 5048500.0 8137800.0 5923000.0 False True 3190231.176386748 4385155.646008273 5041384.94762501 4852603.738362583 4713989.239307738 5068599.966151302 5631438.2431906955 5425244.705763562 6132348.230933281 5544989.069064582 0.5753358819379832 0.7908321533892638 0.9091785186287973 0.8751331477703344 0.8501349922594112 0.9140865568931329 1.0155905039756368 0.9784049415049215 1.1059261171758783 1.0 22.40275318570361 5.609403171858773 0.38124676516943784 1.024577611206497 5.489436328508778e-17 0.8188262620225129 0.05907190843926899 4.994285644686921 0.3456856265945396 0.04974425781629466 2.6709425239080806 406820.82094692875 -5.609403171858773 -1.024577611206497 IKTEPS(ph)SPLSDPSDIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 IKTEPS(0.647)S(0.348)PLS(0.004)DPSDIIR;IKTEPS(0.611)S(0.388)PLSDPSDIIR 146.89 2.5435e-07 2015220000.0 1099260.0 1280750.0 1140640.0 1209590.0 1194650.0 1531880.0 1366050.0 1203370.0 1854900.0 1475320.0 True False 1093341.7062992689 1323378.9895202748 1301232.1973793888 1362723.9699779442 1346781.596254689 1425984.7412576408 1299968.942682231 1293171.579989044 1397784.749386582 1381163.814515001 0.7916090001845281 0.9581622220424176 0.9421273448554107 0.9866490532525775 0.9751063429993021 1.0324515645947319 0.9412127142490468 0.9362912396044378 1.0120340068983182 1.0 20.397453011564966 5.457961505565448 1.3736204308190774 0.9759505963462664 1.2886247939649902e-06 0.7703928136637062 0.03031665715624658 3.9116261883395422 1.5433543423864857 0.008520017398695456 8.586105623359211 287052.6136752195 -5.457961505565448 -0.9759493077214724 IKTEPSS(ph)PLSDPSDIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 IKTEPS(0.049)S(0.951)PLSDPSDIIR 176.57 6.5958e-10 1629300000.0 960720.0 1181900.0 1023200.0 1079100.0 1026100.0 1300600.0 1322500.0 1012200.0 1730600.0 1312600.0 True False 955547.5902660276 1221238.8270263614 1167257.666186168 1215713.9493573844 1156767.7528288094 1210692.5832830833 1258525.622559388 1087735.503847454 1304116.8188519147 1228828.744226602 0.7776084297795528 0.9938234540525682 0.9498945004910466 0.9893274022675375 0.9413579868339212 0.9852410996823376 1.02416681614286 0.8851807129007639 1.0612681587886337 1.0 20.22885243778442 4.74218078892231 24.709253228123256 0.9737001018077872 0.7776083414236797 0.6350691036455196 0.04597553529434291 187.12663106666963 1277156.6996171777 0.010317988877285793 0.07619252391598862 55230.730695525475 -4.74218078892231 -0.19609176038410747 IKVDNHLFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKVDNHLFNK 10 1 P78356;P78356-2;A0A087WT35;P48426-2;P48426 P78356 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 0 ; 88.681 0.0072275 1045420000.0 3015500.0 3160700.0 3057800.0 2687500.0 2344000.0 3356100.0 3609400.0 3157900.0 5149000.0 3556600.0 False True 2999264.883053544 3265901.988816501 3488311.66112594 3027737.2244444205 2642494.506023513 3124100.706409621 3434799.5327530135 3393558.533491285 3880097.943065128 3329614.7430415475 0.900784359308118 0.9808648269718899 1.0476622463352698 0.9093356012950115 0.7936337113913782 0.9382769321701787 1.031590678750834 1.0192045613034877 1.1653293976950387 1.0 21.666923827564432 2.148629430735237 2.9905027751640576 1.057784562800765 0.9286731166779055 0.42193961978064987 0.072627250244858 0.2869834497351657 5.145216540803677 0.033554803424613706 0.02283264533438996 140.80868113043564 -2.148629430735237 -0.1291114461228594 IKVEELENER ddPTM_BT-474_Trastuzumab_2h_R1 1 IKVEELENER 10 1 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;E9PIK8;E9PJA0;A0A3B3IS15 E9PP16 PPFIBP2 Liprin-beta-2 0 91.914 0.008487200000000002 0.0 74389.0 77109.0 76608.0 70230.0 79747.0 89105.0 89336.0 83655.0 111430.0 92178.0 False True 73988.49788939481 79675.52645162512 87393.74051132718 79121.11079915581 89902.30775249895 82945.38108060828 85014.47638333884 89897.76089148266 83969.56958550164 86295.12112244376 0.8573891191880114 0.9232912059834052 1.012730955986777 0.9168665594302976 1.0418005859790958 0.9611827412921462 0.9851597086550489 1.0417478963141744 0.973051181727384 1.0 16.39699137543773 6.1440502358019895 0.6751832794714764 1.0005641509877614 3.6232615177158775e-13 0.5734183593580766 0.036373362799578764 11.625013348708794 0.9054800561429723 0.013318754340882203 13.646724232326983 1393317.9617905186 -6.1440502358019895 -1.000564150987399 IKVNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKVNGK 6 1 P35268;K7ERI7;K7EMH1;K7EP65;K7EKS7;K7ELC4;K7EJT5 P35268 RPL22 60S ribosomal protein L22 0 ; 91.584 0.043527 3750500000.0 3155300.0 3176700.0 3071100.0 2782500.0 2817900.0 2715300.0 3349400.0 2975300.0 4353100.0 3405900.0 False True 3138312.215386784 3282434.539144298 3503484.1855202722 3134764.214703844 3176742.8619981525 2527597.702128676 3187376.7260494633 3197331.9942672704 3280336.83355153 3188532.5460623107 0.98424970422913 1.0294499089237625 1.0987763602560408 0.9831369664315115 0.9963024733497803 0.7927150391643772 0.9996375072243578 1.0027597172297416 1.0287920183228467 1.0 21.604461176506707 3.510734837446729 16.74244223465199 0.9682964625359195 1.0374007759257036 0.16883951432142197 0.0671589097609665 21.913357995845935 10912.609948493351 0.018634908870186564 0.028761096774674772 3241.4164920767116 -3.510734837446729 0.06910431338978407 IKWDEQTSNTKGDDDEES(ph)DEEAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 IKWDEQTSNTKGDDDEESDEEAVK 24 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 IKWDEQTSNTKGDDDEES(1)DEEAVK;IKWDEQTSNTKGDDDEES(1)DEEAVK 189.7 7.0823e-18 504160000.0 468390.0 296023.0 249668.0 223845.0 204000.0 417220.0 393810.0 321370.0 813070.0 400030.0 True False 465868.2402830208 305875.94660531764 284819.0842468416 252183.75404865513 229978.19079726835 388378.5634302379 374759.90579970716 345352.2612837944 612699.7930798143 374499.7429170861 1.24397479329155 0.8167587625635254 0.7605321222073583 0.6733883235388185 0.6140943889731463 1.037059626276498 1.0006946944224702 0.9221695550275854 1.6360486346594514 1.0 18.514605202754023 1.375775676830882 7.654340033563186 1.3171473646575067 0.8702922184161874 0.3740578541074626 0.22507423757208347 0.22713153536900096 14.80253546850217 0.1492788347847899 0.05454551636012682 23.75612910520655 -1.375775676830882 -0.4468551462413193 IKWDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 IKWDEQTSNTKGDDDEESDEEAVKK 25 3 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 IKWDEQTSNTKGDDDEES(1)DEEAVKK 146.89 1.773e-07 885070000.0 287090.0 153900.0 123970.0 134180.0 104550.0 221110.0 200360.0 164580.0 529270.0 181780.0 True False 285544.33933869726 159022.46846548558 141423.89843344336 151167.17424221447 117863.82278359994 205825.18613695414 190667.8213504719 176861.79532030632 398838.50035464764 170178.64477031198 1.677909350636168 0.9344443227886569 0.8310319936107228 0.8882852160812712 0.6925887965712695 1.2094654203807644 1.1203980476387851 1.0392713818999706 2.3436460014883482 1.0 17.37669048315893 1.4039397492513481 24.9997925923956 1.678383439987851 1.0298928873325226 0.2854118807380376 0.3931442554058336 46.848580524778754 16003.23993247629 0.24186979254060764 0.08841199997872534 25.34776950222114 -1.4039397492513481 -0.6484905526553284 IKWGDAGAEYVVESTGVFTTMEK ddPTM_BT-474_Trastuzumab_2h_R1 11 IKWGDAGAEYVVESTGVFTTMEK 23 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;;;;;;; 290.54 1.5095999999999992e-61 8686129000.0 7239419.0 6507256.0 6231330.0 5810967.0 6027378.0 8960058.0 9012377.0 7968188.0 11202861.0 9152425.0 False True 7200442.772479063 6723846.082240674 7108647.100308686 6546634.826388124 6794928.8612316605 8340670.280167812 8576413.893886505 8562814.650198821 8442066.017196469 8568309.400714735 0.8403574656020744 0.7847342769484721 0.8296440718767357 0.764052104122434 0.7930302867756917 0.9734324345794593 1.0009458684079608 0.999358712406504 0.9852662435943624 1.0 23.030579145912984 2.7039990074637075 4.912801050668912 0.9950222715798723 0.8002666753650471 0.9528285091514531 0.02109735085577778 0.03714192585360531 2.3183535995380247 0.00669428137880225 0.006459535717490099 505.823505993121 -2.7039990074637075 -0.1947555962148252 IKYPENFFLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IKYPENFFLLR 11 1 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;A0A087WYY5;P62140;E7ETD8;C9JP48;C9J9S3;P62136;P62136-2;P62136-3;E9PMD7 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 ; 182.35 5.3124e-06 1038090000.0 752700.0 965200.0 1049100.0 759480.0 555310.0 739580.0 807260.0 580390.0 1590870.0 842030.0 False True 748647.546832831 997326.0985242788 1196804.1610593305 855630.0901287607 626025.4369197598 688454.5753840549 768209.7497673281 623701.648960704 1198821.4050658417 788290.9245018475 0.9497097119390678 1.2651751625258518 1.5182264870239865 1.085424255860192 0.7941553270010946 0.873350883519453 0.974525680671499 0.7912074458485564 1.5207854965771994 1.0 19.588368639495442 3.4826298034763044 24.482076891807182 0.9606171485387206 1.2556800164345565 0.18207309619198253 0.2328510801041451 253.97306473935393 1128754.266480862 0.06275684176482361 0.08767039686173395 3038.294052363098 -3.4826298034763044 0.2950628678958359 ILAGDVETHAEMVHSAFQAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILAGDVETHAEMVHSAFQAQR 21 0 P40123;A0A087X0J3;A0A087WZ15;P40123-2;B7Z385;F8WEW0 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 0 230.05 6.1687e-26 204830000.0 168470.0 213600.0 202750.0 216090.0 223040.0 217840.0 193600.0 120670.0 218930.0 188090.0 False True 167562.97623877646 220709.54687607323 231295.43766540772 243446.97184379335 251442.82193834698 202781.23354020226 184234.8283761797 129675.00814984429 164977.63501170123 176085.9351680492 0.9515977302722175 1.2534195117028346 1.3135372648852892 1.3825463777754738 1.4279551725603765 1.151603808371612 1.0462779335575754 0.7364302437107642 0.9369154603645846 1.0 17.425920153204654 2.1664336567773743 2.570929269316852 0.8676315366550827 1.272185151568732 0.5712025404224459 0.13873406123850546 0.18454216569925197 2.457693115238933 0.0642264631840544 0.04253131785651357 146.70119676987144 -2.1664336567773743 0.40455361491364916 ILAYTEGLHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILAYTEGLHGK 11 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;H0YAC6 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 146.71 3.5643000000000004e-05 569380000.0 567480.0 792070.0 835840.0 664280.0 515190.0 585250.0 607040.0 472490.0 808940.0 770460.0 False True 564424.7507329555 818433.5711335739 953519.0067484804 748377.7798898373 580796.3927296305 544793.0450303121 577675.1560820038 507749.6030556048 609587.5762406506 721288.5831760081 0.7825227847745168 1.1346825531742273 1.3219660327214742 1.0375566691968823 0.8052205542644852 0.7553052380663736 0.8008932479401801 0.7039479272219457 0.8451368709546033 1.0 19.460217062916428 3.279416499430369 4.39196673854878 0.7916752423184419 1.0982609351543413 0.414152502337117 0.14391613941535872 0.17193413358181253 7.202850276094377 0.04091655599777789 0.05452690063408823 1902.9023367609655 -3.279416499430369 0.3065856928358994 ILCDLS(ph)DLEYLDEEFHQSLQWMK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILCDLSDLEYLDEEFHQSLQWMK 23 0 A0A2R8YE75;A0A2R8Y6F3;Q9P2P5 A0A2R8YE75 HECW2 E3 ubiquitin-protein ligase HECW2 1 ILCDLS(0.993)DLEY(0.007)LDEEFHQSLQWMK 59.55 0.024113 1754200000.0 1014800.0 604410.0 478600.0 509660.0 566460.0 1008400.0 1039200.0 1002000.0 1687900.0 886700.0 True False 1009336.4295548805 624527.4214764392 545982.7199342262 574182.9037433832 638595.3233285325 938691.6815182692 988929.9258704835 1076774.3280529047 1271939.6617012315 830110.046857938 1.2159067744997605 0.7523429259052427 0.6577233006645729 0.6916949215549572 0.7692899582961189 1.1308039037370108 1.1913238848435783 1.2971464833230477 1.532254267389811 1.0 19.66294308021222 2.549489635363462 2.426282943950426 1.2814533948005282 0.7963072820285061 0.543745934526368 0.1902128756749911 0.212275524858227 2.4831647951968696 0.07106796202461332 0.06272791666410135 354.3966723413144 -2.549489635363462 -0.48514611277202213 ILDAVVAQEPLHR ddPTM_BT-474_Trastuzumab_2h_R1 5 ILDAVVAQEPLHR 13 0 Q15029;Q15029-3;Q15029-2;K7EP67;K7EJ74 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ;;;; 178.58 1.4475e-05 1798050000.0 2055427.0 2637824.0 2355225.0 2474376.0 2454520.0 2456454.0 2461030.0 2174928.0 2709535.0 2424702.0 False True 2044360.8094114086 2725622.3772417204 2686820.2080173166 2787631.747896514 2767088.572920151 2286645.116850734 2341980.576852427 2337232.1714206063 2041806.4051588627 2269955.442468181 0.9006171536074394 1.2007382727645444 1.1836444706138673 1.2280557123471334 1.2190056778874148 1.0073524237834406 1.0317297569092068 1.029637907288292 0.8994918433018907 1.0 21.114232548090982 2.718916493977145 21.181325998875522 1.0014623655101325 1.156034537748033 0.3920226022864355 0.0944965550953244 119.58319077306653 128939.63577365955 0.030529120928682103 0.02885503212267292 523.4997685171553 -2.718916493977145 0.15457217223790054 ILDDDTIITTLENLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILDDDTIITTLENLKR 16 1 Q14204;A0A2R8Y706;A0A2R8Y6H2;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 271.19 6.1116e-35 2370000000.0 1213690.0 1252960.0 1112210.0 1197310.0 1133140.0 1313800.0 1504150.0 1333340.0 1875770.0 1480860.0 False True 1207155.6278936358 1294664.0161696842 1268799.5004973782 1348889.3232370394 1277438.6623530232 1222980.0983525396 1431388.518089002 1432840.6013633334 1413511.617530254 1386350.246971969 0.8707436165790531 0.9338650308588732 0.9152084787149984 0.9729787448613719 0.9214400654835762 0.8821580989535232 1.03248693554562 1.033534349990493 1.0195919974895307 1.0 20.402860354746508 2.2282492923958808 24.999341320436862 1.0254942544354426 0.9196670191780456 0.7755420123752164 0.027686650890278983 95.1819407753002 230762.73234421 0.010358749359084754 0.0077348217130136804 169.14115519483002 -2.2282492923958808 -0.10582723525739701 ILDEIEEHNIK ddPTM_BT-474_Trastuzumab_2h_R1 7 ILDEIEEHNIK 11 0 Q15019-2;Q15019-3;Q15019;B5MCX3;H7C2Y0;C9J2Q4 Q15019-2 SEPT2 Septin-2 0 ;;;;;; 240.85 1.0616e-15 5065817000.0 7190062.0 6967905.0 6245935.0 5996624.0 5982149.0 7695728.0 7661902.0 7023265.0 9811507.0 7611796.0 False True 7151351.505082982 7199827.505737476 7125308.357359755 6755795.983552285 6743940.216174949 7163740.437155123 7291266.528952009 7547376.697717046 7393592.567308042 7126004.662493585 1.0035569500428208 1.010359640042399 0.9999022867417566 0.9480482126415345 0.9463844798854032 1.0052955023816015 1.023191377817678 1.0591315969018762 1.0375509022921157 1.0 22.76466199674068 2.299519294094172 2.9927865631351263 1.038418957156589 0.982150330637228 0.44413533630854907 0.024788604799552187 0.22184045793541796 4.062351112912854 0.010535352240147742 0.008082970381861617 199.3055048246687 -2.299519294094172 -0.05626862651936093 ILDEWFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 ILDEWFGR 8 0 Q8IYB7;Q8IYB7-3;Q8IYB7-2;H7C440 Q8IYB7 DIS3L2 DIS3-like exonuclease 2 0 ;; 121.99 0.0032795000000000003 73467500.0 200809.0 245703.0 222412.0 215816.0 215912.0 223048.0 234409.0 206885.0 246255.0 227914.0 False True 199727.86665597744 253881.0758244002 253725.6763602405 243138.28347188723 243407.1133893128 207629.2167585152 223069.7411406606 222323.80924074366 185568.75489794224 213368.3333930077 0.9360708005723343 1.189872329165037 1.1891440136662537 1.1395237503404296 1.1407836838701648 0.9731023036866417 1.045467889228828 1.0419719070085283 0.8697108514042672 1.0 17.7029865519729 2.7418728956791276 24.56658303373161 0.9979939119807909 1.1280402178341122 0.39530139276227305 0.08122278913624188 243.51394418308593 1806101.047204299 0.02505304872007064 0.02558318459884977 551.9158872384676 -2.7418728956791276 0.13004630585332133 ILDILEYIHEHEYVHGDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILDILEYIHEHEYVHGDIK 19 0 Q99986;H0YJ50 Q99986 VRK1 Serine/threonine-protein kinase VRK1 0 143.71 4.9524e-08 31995000.0 60728.0 54495.0 53636.0 48217.0 49431.0 65220.0 68639.0 3839.1 82531.0 23819.0 False True 60401.04719551509 56308.83313207684 61187.48258753056 54321.267256199586 55725.74484950868 60711.494911366055 65318.66934355679 4125.593136554791 62192.34090874113 22298.851027528133 2.7087067006703376 2.5251898881499804 2.7439746788744435 2.436056781093317 2.499041084256527 2.7226288402221783 2.929239235820729 0.18501370906786674 2.7890379119517914 1.0 14.444681755184186 1.7614221203815017 24.99999999968376 1.2664551935878863 2.6392859684737746 0.49660059114688737 0.6115194049322631 8.83956772533839 9673.852476225375 0.2586738682446985 0.14345330058686095 57.732733452487196 -1.7614221203815017 1.3728307748858883 ILDLIDDAWR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILDLIDDAWR 10 0 Q9BS18 Q9BS18 ANAPC13 Anaphase-promoting complex subunit 13 0 ; 118.71 0.0018349 256455000.0 272500.0 333800.0 336820.0 327180.0 309520.0 337390.0 328060.0 305420.0 349530.0 332250.0 False True 271032.89027759613 344910.33121363906 384241.3283080777 368600.954453479 348935.5373312279 314067.0234306316 312190.48448909825 328211.9912913353 263393.0149620423 311045.52054646384 0.871360853554261 1.1088741307307028 1.2353218513901727 1.1850386200897483 1.1218150215383156 1.0097140215324736 1.0036810173013353 1.0551895771227067 0.846798933157106 1.0 18.246766204184784 2.6860917383052496 4.38885636145563 0.9920074064440859 1.1167558275992255 0.25594605679013094 0.10217696283982435 0.3264499781991986 13.51012869304065 0.034809804468434805 0.033328071053234445 485.3910210294059 -2.6860917383052496 0.12474842115513962 ILDPNTGEPAPVLSSPPPADVS(ph)TFLAFPSPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 32 0 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 1 ILDPNTGEPAPVLS(0.005)S(0.042)PPPADVS(0.476)T(0.476)FLAFPSPEK 110.7 2.3615e-06 47986000.0 92509.0 99310.0 81572.0 81802.0 87112.0 100710.0 92616.0 84467.0 111940.0 85605.0 True False 92010.94182271624 102615.4733158372 93056.62856346564 92158.12481265193 98205.1968467237 93748.15474583983 88135.81025252199 90770.35645473514 84353.8869191514 80141.61560987221 1.1481044039668937 1.2804268111509916 1.1611523907436987 1.1499409403134053 1.225395770966044 1.1697811933590654 1.0997508545568304 1.1326244893365194 1.0525603492919888 1.0 16.29026397353149 1.423450084406279 0.6030467353634615 0.9973682129447206 1.2016118588086306 0.7050907267143013 0.04114056774843397 0.3750813939133329 0.32339660965190864 0.03890258364310993 0.01939077048949685 26.51246354757026 -1.423450084406279 0.20424364586391008 ILDQMPATPSS(ph)PMYVD ddPTM_BT-474_Trastuzumab_2h_R1 1 ILDQMPATPSSPMYVD 16 0 P45985;P45985-2 P45985 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 1 ILDQMPAT(0.001)PS(0.067)S(0.929)PMY(0.004)VD 121.02 0.00010594 171810000.0 369550.0 440340.0 414150.0 429210.0 446660.0 443020.0 445600.0 379320.0 443730.0 440690.0 True False 367560.3838608647 454996.45070884924 472458.72014366864 483547.94199210743 503539.5034387642 412395.0701569053 424044.6256426945 407626.78454793175 334378.68717737263 412564.7869063087 0.8909155495724256 1.1028484862237564 1.1451746129050067 1.1720533534092394 1.2205101342134548 0.9995886300654108 1.0278255418317919 0.988030965038472 0.8104877046942648 1.0 18.65426116448431 1.9364418658348668 1.4404642108336678 0.9174256229020821 1.1054604183086751 0.35262201255401515 0.09716552919014937 0.44640683920495067 1.7228959917098403 0.07031916512507248 0.031746525710348764 86.38570180272775 -1.9364418658348668 0.18803479540659307 ILDSEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILDSEVR 7 0 A4FU01-3;A4FU01-2;A4FU01-6;A4FU01-4;A4FU01 A4FU01-3 MTMR11 Myotubularin-related protein 11 0 ; 106.29 0.017998 493310000.0 708670.0 697390.0 648370.0 676250.0 637250.0 835450.0 712730.0 663210.0 815550.0 912240.0 False True 704854.5994606387 720602.2045688425 739654.8602669325 761863.1806625254 718400.0102233296 777697.30793776 678252.5270069964 712702.0979121423 614568.6303101116 854020.0621920425 0.8253372849947627 0.8437766704440739 0.8660860476373765 0.8920904957513821 0.8411980491177078 0.9106311928335943 0.7941880490091796 0.8345261773860739 0.7196184931916907 1.0 19.703910435717006 -0.15657530318013935 8.034048806554786 1.0000014191675597 0.8392704820470687 0.48808374735777094 0.05019070365358507 0.0 0.0 0.04762208030710538 0.011224631973121521 0.6973080787704429 0.15657530318013935 -0.16073093712049102 ILDSVGIEADDDR ddPTM_BT-474_Trastuzumab_2h_R1 6 ILDSVGIEADDDR 13 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 ;;;;; 294.15 2.9206e-40 3011570000.0 1978285.0 2137300.0 1699274.0 1688044.0 1679889.0 1725699.0 1631178.0 1572066.0 1912300.0 1759807.0 False True 1967634.1333681252 2208438.7384748664 1938517.008845613 1901750.1973209474 1893812.906667808 1606405.4899884902 1552271.6884349182 1689381.5477093956 1441039.2885071763 1647494.6106134283 1.1943190106312374 1.34048313375215 1.1766454326207632 1.1543286303151241 1.149510835706264 0.975059632753737 0.9422013756129649 1.0254246276899026 0.8746852822605712 1.0 20.651842315131706 3.066295015529994 1.0574604663297367 0.9570232518056268 1.255292756699983 0.8129698154925011 0.05835043175773859 0.1998231221806719 0.48288760586424617 0.02538139070069751 0.03351834453499986 1164.9170869665577 -3.066295015529994 0.2982695048943562 ILDSVGIEADDDRLNK ddPTM_BT-474_Trastuzumab_2h_R1 8 ILDSVGIEADDDRLNK 16 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 ;;;;;;; 283.1 1.1545999999999999e-35 46059500000.0 27053990.0 24653520.0 21921480.0 19914170.0 21014500.0 26039180.0 25246330.0 25692680.0 35879660.0 26017310.0 False True 26908334.323820833 25474097.509832427 25007833.839080088 22435301.88015415 23690572.012299992 24239152.77623648 24025068.567553665 27609998.246385507 27037598.55581205 24356863.001260266 1.104753691903122 1.0458693924794156 1.0267263825307118 0.9211080211352879 0.9726446304302078 0.9951672666132048 0.9863777846231909 1.1335613393628283 1.1100607887975178 1.0 24.53782500008491 1.7478364060685982 24.99999999999942 1.0924442663516274 1.0045944439700782 0.26012510539591405 0.055842377741654535 2.6500523402361007 7158.35506612091 0.02676584573621981 0.014843221337304448 55.95467867015021 -1.7478364060685982 -0.08784982238154915 ILDVASLEVLNEVNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILDVASLEVLNEVNRR 16 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ; 171.46 7.8796e-09 548900000.0 198627.0 246690.0 251750.0 250395.0 255451.0 226059.0 265110.0 229419.0 301270.0 252630.0 False True 197557.61430153414 254900.92752274597 287194.2117497728 282094.98132642236 287981.1706732994 210432.07341564712 252285.61648145152 246539.41074607684 227026.04531117316 236506.93711257572 0.8353142479178023 1.0777735766854688 1.2143162279128847 1.1927556323311863 1.217643652186922 0.8897501104396056 1.0667155034076876 1.0424193630680936 0.9599128384260047 1.0 17.851522975088724 2.7428521713479617 24.995113626384192 1.0045841743660515 1.116569742126425 0.20315342784412105 0.11255204091695183 660.5089865492544 3846974.8538558125 0.03645824862656183 0.03748440600546546 553.1617875038648 -2.7428521713479617 0.11198556776037338 ILDWHVANTDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILDWHVANTDKK 12 1 P37837;F2Z393 P37837 TALDO1 Transaldolase 0 ; 156.69 4.7643e-05 5521600000.0 10463100.0 8829000.0 8032200.0 7539600.0 6989000.0 10398300.0 11175800.0 9835200.0 15225200.0 10199300.0 False True 10406767.832159705 9122867.927756796 9163063.942866044 8494112.586947402 7879007.722951515 9679489.995965317 10635183.858298073 10569152.566133663 11473153.46722767 9548371.941939946 1.0898997122692058 0.955437008867011 0.9596467333471281 0.8895875274441446 0.8251676590376656 1.0137319801556381 1.1138216989206768 1.1069062485626555 1.201582168875657 1.0 23.186823334774125 2.3947922962838293 3.9984257255368085 1.1130776945191336 0.9404679592247833 0.48844860671283985 0.07744140359130454 0.18051202315518955 5.576714695610774 0.028275324300628995 0.02341970950148939 248.19458172150146 -2.3947922962838293 -0.1726097352943503 ILDYSVHAER ddPTM_BT-474_Trastuzumab_2h_R1 1 ILDYSVHAER 10 0 A0A0J9YYJ0;Q8N129 A0A0J9YYJ0 CNPY4 Protein canopy homolog 4 0 110.39 0.0029715 0.0 160680.0 221030.0 198250.0 188320.0 236110.0 215980.0 168510.0 184450.0 167650.0 223100.0 False True 159814.91673322645 228386.84993454374 226161.876780109 212161.29269111564 266177.2089663872 201049.81096223308 160358.5275292875 198214.59561812205 126334.90389490564 208861.5669944805 0.7651714914953683 1.0934843265854615 1.0828314660020035 1.015798625587839 1.2744192854467158 0.9625984035997688 0.7677742240319648 0.9490237886770245 0.6048738679540993 1.0 17.67218751826539 2.4653385635529017 10.345615363612119 0.8405728814636829 1.0561989539429093 0.3052350957433023 0.15299754189709935 0.31261781652475457 255.18353526498632 0.050566364137047584 0.042894699151584996 291.97022433701613 -2.4653385635529017 0.21562607247922638 ILEDHGS(ph)PAGEIDDEDKDKDETETVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILEDHGSPAGEIDDEDKDKDETETVK 26 2 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;H0YBA1 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 ILEDHGS(1)PAGEIDDEDKDKDETETVK 51.236 0.056399 125310000.0 81745.0 50141.0 38364.0 34403.0 39955.0 71835.0 71572.0 64473.0 120020.0 61287.0 True False 81304.8940027233 51809.912874125446 43765.31773413422 38758.41627258093 45043.03241816107 66869.2155314011 68109.78892840864 69284.30264726038 90442.67918560436 57375.611189559444 1.4170636672453998 0.9029953982181408 0.7627860832635127 0.6755207564504994 0.7850553830153792 1.165464108268518 1.187086072223009 1.2075566815028185 1.5763262004616707 1.0 15.808149996362605 2.593564975917442 4.304553624618928 1.2447655716629151 0.8884036953233153 0.3261312393832173 0.22963085157480065 0.2703952019279862 8.286039670787924 0.078399780872343 0.07302169241178835 392.2518277503318 -2.593564975917442 -0.3563618763395998 ILEEENSLAEYHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILEEENSLAEYHSR 14 0 Q15650 Q15650 TRIP4 Activating signal cointegrator 1 0 143.38 8.681799999999999e-06 0.0 88790.0 116840.0 99980.0 119260.0 112990.0 116350.0 123020.0 142340.0 122580.0 145540.0 False True 88311.96450549645 120728.9487687285 114056.31495826143 134358.3037719967 127378.60675580094 108306.99835843965 117069.05261796297 152962.13358787465 92371.80148784691 136251.51259693704 0.6481540118144841 0.8860741907935524 0.8371012753132946 0.9861050436148853 0.9348784782493815 0.7949049246802594 0.8592128658731286 1.1226453980028201 0.6779506497010694 1.0 17.055912720502427 5.292256760201917 1.316659252442653 0.9179564895599321 2.7246309400108547e-13 0.2904813971476262 0.11653194766769642 6.14987094542111 3.3710037793708834 0.031404148160313644 10.832889733106558 196000.31088079413 -5.292256760201917 -0.9179564895596597 ILEFFGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILEFFGLK 8 0 P07237;H7BZ94;H0Y3Z3;I3L398;I3L4M2 P07237 P4HB Protein disulfide-isomerase 0 ; 146.35 0.0012904 286140000.0 415880.0 502160.0 438260.0 358650.0 361260.0 429410.0 481610.0 433820.0 612110.0 423460.0 False True 413640.94828861207 518874.09203786956 499963.19857579196 404055.0532267872 407264.31964422174 399725.89742241136 458312.6843711357 466193.85129332374 461263.6923537769 396434.42025765433 1.0434032141300311 1.3088522729702383 1.261149822083691 1.0192229346891222 1.0273182620710097 1.0083027027840261 1.1560870120038136 1.175967139761302 1.1635308862787144 1.0 18.59672270381085 3.745762531378727 24.976605743770097 1.0908060052281048 1.2149068211763923 0.281510489093887 0.09021527082038869 774.4703640854126 2685895.4831997314 0.02458295478373419 0.04318201584225598 5568.811676637783 -3.745762531378727 0.12410081594828748 ILEFFGLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILEFFGLKK 9 1 P07237;H7BZ94;H0Y3Z3;I3L398;I3L4M2 P07237 P4HB Protein disulfide-isomerase 0 134.25 0.0021176 0.0 334300.0 439800.0 367860.0 321030.0 337940.0 443580.0 458810.0 378200.0 617580.0 430560.0 False True 332500.1659442217 454438.4771352857 419651.49050356104 361672.3650840525 380974.65587269026 412916.35867500363 436615.6074755937 406423.20446068654 465385.6841480216 403081.29217903863 0.8248960504883305 1.1274114823801733 1.0411088250584508 0.8972690425022422 0.9451558860823311 1.0243997096535964 1.0831949186112562 1.0082909138838514 1.1545702893631415 1.0 18.620711300774303 2.509473979978431 5.505485248933465 1.05705605332653 0.9766735069576928 0.21020399882348562 0.0854701469069124 0.3510973330644326 30.02629589075818 0.028293442777780283 0.02571357074484737 323.2019556593285 -2.509473979978431 -0.08038254636883724 ILEGPQQSLSGSPLQPIPAS(ph)PPPQIPPGLRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR 192.8 1.8651e-20 558500000.0 0.0 0.0 6914.4 13392.0 10401.0 0.0 9660.3 10438.0 9078.6 5109.9 True False 0.0 0.0 7887.8874189578155 15087.425826887298 11725.505698443081 0.0 9192.994383070287 11216.936563090036 6841.3006770074 4783.781807194512 0.0 0.0 1.6488811022055647 3.1538699788098072 2.451095424295616 0.0 1.921700184829624 2.3447843181769823 1.4301029923059005 1.0 12.223935873015588 4.2175209796619155 5.55975922524084 1.8482821001063086 2.393582807980588e-14 0.4197018362206133 0.8150705360477165 0.14473248931746616 13.209171233837095 0.21021036491283449 0.5047481636199768 16501.407134960686 -4.2175209796619155 -1.8482821001062846 ILEHMPVSNQKPDTDEAEDPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILEHMPVSNQKPDTDEAEDPEK 22 1 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 ; 238.28 9.0403e-31 515190000.0 830420.0 556740.0 509240.0 451420.0 435760.0 805380.0 711570.0 663920.0 1217750.0 730540.0 False True 825949.1109883352 575270.754343563 580936.5656065715 508569.72571486415 491251.45304812596 749705.9762605947 677148.6406386273 713465.0817174492 917651.8295139959 683916.3117532396 1.207675700658448 0.8411420293059534 0.8494263927077913 0.7436139729013491 0.7182917626116979 1.0961954896772403 0.9901045332618794 1.0432052423029077 1.3417604080264856 1.0 19.383460273224415 2.1850714484836393 1.4227974196875524 1.130350770425795 0.8718068032547406 0.2959716441212308 0.15948994584223 0.5238092746997814 2.0486735665044926 0.09859815116047678 0.055066818097972044 153.13393711145508 -2.1850714484836393 -0.2585439671710543 ILELEEENDRLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILELEEENDRLR 12 1 Q14789;Q14789-2;Q14789-4;Q14789-3 Q14789 GOLGB1 Golgin subfamily B member 1 0 ; 245.69 1.5931e-16 247240000.0 173646.0 249050.0 227990.0 226000.0 232080.0 235110.0 219010.0 188347.0 250290.0 211090.0 False True 172711.1092298845 257339.4786960956 260089.01027539547 254611.57682769766 261634.01235406913 218857.39908940915 208415.64960055315 202402.4095466869 188609.38321417186 197618.05547675857 0.873964217557017 1.3022063094146816 1.3161196715954124 1.2884023993325953 1.3239377936538765 1.1074767361788382 1.054638702408771 1.0242101059965698 0.9544137187219404 1.0 17.59235523996656 2.407786981514401 2.639024373783724 1.0093718035571893 1.2339716612748113 0.38331449116102334 0.125981030917214 0.2845515177768111 4.050659707585815 0.04893632510212264 0.03959540753894547 255.7331225679986 -2.407786981514401 0.22459985771762203 ILELLRPDPNTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILELLRPDPNTGK 13 1 Q15393;Q15393-2;I3L4G7 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ; 117.92 0.00042749 1651610000.0 2512900.0 2488700.0 2292200.0 2184550.0 2205400.0 2817400.0 2535800.0 2361400.0 3347100.0 2653400.0 False True 2499370.825609437 2571534.875049078 2614921.835840432 2461113.8060130444 2486244.6175700803 2622639.769446225 2413133.6663032877 2537619.658946233 2522252.053842165 2484057.740309972 1.006164544829604 1.0352154192390834 1.0526815836068812 0.9907635261754969 1.0008803649064275 1.0557885700027891 0.9714482989441969 1.0215622679646639 1.0153757752536892 1.0 21.244267277782207 3.7344711619470226 24.999211857313668 1.0090462875717525 1.0317400058387427 0.17469787300376682 0.023200585724034616 635.5531516662868 3885187.054718188 0.005938564570944659 0.009561613384623349 5425.8922108485995 -3.7344711619470226 0.02269371826699018 ILELT(ph)PEPDRPR ddPTM_BT-474_Trastuzumab_2h_R1 6 ILELTPEPDRPR 12 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR 175.15 4.6005e-05 15116430000.0 3206380.0 3632210.0 3407140.0 3452950.0 3370830.0 3455770.0 3446390.0 3130560.0 3882880.0 3494290.0 True False 3189117.2063423046 3753105.914132693 3886835.6966082244 3890093.1159610604 3800085.2200252768 3216880.7539075627 3279674.9492116813 3364178.283861576 2925996.2519263434 3271281.420587817 0.9748831715521593 1.1472892214385813 1.1881691596896602 1.189164922185768 1.1616503539284122 0.9833702272333148 1.0025658228518768 1.0283976984337428 0.8944495675338658 1.0 21.64142444571893 2.7346053712391396 24.525090401440327 0.9889551549613512 1.139338546495871 0.5643689475498488 0.06580208987091456 201.71746994637326 1250772.8575319906 0.021349154433652016 0.020833052927594832 542.7569224286871 -2.7346053712391396 0.15038339153451974 ILELTPEPDRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILELTPEPDRPR 12 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 0 ; 129.84 0.00020714 149520000.0 110863.0 129601.0 122883.0 135664.0 124925.0 130470.0 129966.0 117825.0 146426.0 128580.0 False True 110266.12592603713 133914.6909395412 140183.85828181682 152839.04849005668 140833.45826151335 121450.91599334433 123679.04806166618 126617.69980322708 110341.27430787623 120373.91431712364 0.9160300763796909 1.1124892938742903 1.1645700738160274 1.2697024048532977 1.1699665916860467 1.0089471351191865 1.027457225789262 1.0518699214985587 0.916654367633036 1.0 16.87716326053159 2.728617265090091 23.340937469508535 1.010313680332044 1.1358353937248313 0.3260885627150276 0.08925892009124928 361.7713586328276 849215.9976827787 0.03023122078402676 0.028862609132130186 535.324678799928 -2.728617265090091 0.12552171339278728 ILEMDKEENRR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILEMDKEENRR 11 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 0 65.563 0.036617 249990000.0 268150.0 284690.0 265650.0 257740.0 250740.0 408080.0 315800.0 270620.0 482070.0 340490.0 False True 266706.31019426597 294165.7345512606 303051.21092880715 290369.8575733221 282670.252747584 379870.3901169927 300523.5475268465 290815.03858051583 363270.3079070513 318759.6366918453 0.8367003832800171 0.9228449925598315 0.9507201541385116 0.9109367189235176 0.8867818262098536 1.1917142146959623 0.942790469476447 0.912333322997402 1.1396370998447203 1.0 18.282109432400087 ILENEKDLEEAEEYK ddPTM_BT-474_Trastuzumab_2h_R1 3 ILENEKDLEEAEEYK 15 1 E5RJD8;O75347;E5RIW3;E5RHG6 E5RJD8 TBCA Tubulin-specific chaperone A 0 ;; 186.72 3.3758000000000004e-07 3883680000.0 1805450.0 1363960.0 1203150.0 1119750.0 1064540.0 1772870.0 1546300.0 1520580.0 2491300.0 1656310.0 False True 1795729.6578043522 1409358.584068767 1372543.0620327287 1261510.2351894458 1200102.8589770803 1650315.6697870828 1471499.561560365 1634053.400948788 1877352.496709686 1550602.8777616664 1.1580848220767734 0.9089100789643902 0.8851673640732749 0.8135611337252688 0.7739588750857076 1.0643058215971806 0.9489854447352186 1.053818114479179 1.210724243862936 1.0 20.564397816856662 1.9144688071452725 1.4706768070990461 1.1032722333568314 0.9126003955187928 0.2678389865467553 0.11576396124499151 0.5130534289121664 2.0678407421351293 0.0837421007026163 0.03729950276023748 82.12375659831595 -1.9144688071452725 -0.19067183783803865 ILENEKDLEEAEEYKEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ILENEKDLEEAEEYKEAR 18 2 E5RJD8;O75347;E5RIW3;E5RHG6 E5RJD8 TBCA Tubulin-specific chaperone A 0 ;; 176.73 8.61e-14 3637300000.0 1209660.0 1002550.0 914010.0 888430.0 824830.0 1316410.0 1285120.0 1111680.0 2226260.0 1265980.0 False True 1203147.3249658619 1035919.270695726 1042694.6632826615 1000905.1469072197 929867.2113495637 1225409.675195819 1222953.835964856 1194639.2065966576 1677628.0533556382 1185184.0725399915 1.015156508463173 0.8740577052099822 0.8797744480720551 0.8445145105284447 0.7845761961319196 1.0339403841038963 1.0318682678074802 1.0079777768498042 1.4154999988822667 1.0 20.17667971276607 1.9634356110773967 1.2673254612523248 1.1688143815451664 0.8851240565380287 0.45334374743750394 0.1225494118796724 0.39994994627268815 1.1891085641272903 0.08845393301079418 0.04012401954029687 91.92541751815139 -1.9634356110773967 -0.28369032500713764 ILENLR ddPTM_BT-474_Trastuzumab_2h_R1 5 ILENLR 6 0 P12532;P12532-2;P17540;P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;A0A2R8Y4H0;A0A2R8Y4D6;V9GYA2;A0A2R8YEW1;A0A2R8YCK2;V9GY80;P19784;H3BSA1;H3BNI9 P12532;P68400;P19784 CKMT1A;CKMT2;CSNK2A1;CSNK2A3;CSNK2A2 Creatine kinase U-type, mitochondrial;Creatine kinase S-type, mitochondrial;Casein kinase II subunit alpha;Casein kinase II subunit alpha 3;Casein kinase II subunit alpha 0 ;;;; 167.98 0.015103 2221680000.0 907808.0 1137210.0 1087595.0 1029871.0 969171.0 1096282.0 1032305.0 929997.0 1181040.0 979791.0 False True 902920.46259495 1175061.347392039 1240718.9224547942 1160252.5630049473 1092589.1821234275 1020498.6057102446 982368.4633619415 999398.0985690794 889988.5171251986 917259.8995387222 0.9843670949193535 1.2810560539962137 1.3526361755035134 1.264911464666037 1.191144606531776 1.1125512041063168 1.0709815875042195 1.0895473562854578 0.9702686420421976 1.0 19.806971044298585 2.434379427123079 1.2489617941805655 1.0268908599712867 1.2337689884401928 0.459539677394576 0.0939571275778319 0.42605783986663553 1.3350133837583966 0.054121759605821024 0.037561358370236046 271.88135589790954 -2.434379427123079 0.20687812846890608 ILEPDDFLDDLDDEDYEEDT(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILEPDDFLDDLDDEDYEEDTPKR 23 1 Q92785;J3KMZ8 Q92785 DPF2 Zinc finger protein ubi-d4 1 ILEPDDFLDDLDDEDYEEDT(1)PKR;ILEPDDFLDDLDDEDYEEDT(1)PKR 122.5 3.829e-05 25342000.0 37294.0 27125.0 23977.8 22432.8 24158.1 32693.0 31692.0 33601.0 54801.0 38481.0 True False 37093.21324775294 28027.839227591227 27353.66582122624 25272.7901799132 27234.490838723003 30433.00986104399 30158.936884803134 36108.47724242079 41296.02784577826 36025.10963475841 1.0296488650228557 0.7780084366641008 0.7592944504139516 0.7015326375448152 0.7559863416056372 0.8447721650146223 0.8371643331712343 1.002314152781424 1.1463123433754736 1.0 15.13671520049164 1.6839777465909898 2.551311627174491 1.076614760136152 0.801962027939178 0.5971251792331291 0.08923529792204675 0.16169225815294352 2.3369405101451752 0.0587984616079958 0.024805742566396748 48.30340505632032 -1.6839777465909898 -0.27465273219697395 ILEPDDFLDDLDDEDYEEDTPK ddPTM_BT-474_Trastuzumab_2h_R1 3 ILEPDDFLDDLDDEDYEEDTPK 22 0 Q92785;J3KMZ8 Q92785 DPF2 Zinc finger protein ubi-d4 0 ;; 170.19 7.4354e-12 46728000.0 112106.0 99709.0 99877.0 89666.0 84540.0 115083.0 112743.0 113169.0 135907.0 117642.0 False True 111502.43375214758 103027.75378963674 113938.8134535535 101017.70640633801 95305.66789216215 107127.5830862426 107289.19036991544 121614.24544053795 102414.54091049783 110133.9868416165 1.012425291681296 0.935476475012212 1.0345472521339731 0.9172255477467769 0.8653610990149759 0.9727023070571539 0.9741696768337992 1.1042390176561137 0.9299085944993529 1.0 16.748900221099788 1.9814472701183254 23.37197620305913 1.0270245879572044 0.9546956583937786 0.12905799342423374 0.05992594544366733 476.02042044104587 599669.65650611 0.02429875613038963 0.016024969686681403 95.8180371735846 -1.9814472701183254 -0.07232892956342585 ILEPDDFLDDLDDEDYEEDTPKR ddPTM_BT-474_Trastuzumab_2h_R1 4 ILEPDDFLDDLDDEDYEEDTPKR 23 1 Q92785;J3KMZ8 Q92785 DPF2 Zinc finger protein ubi-d4 0 ;;; 294.08 2.106699999999999e-61 355363000.0 196237.0 186950.0 172850.0 159137.0 175662.0 206902.0 206991.0 186462.0 300738.0 224126.0 False True 195180.48179598025 193172.5177363385 197185.77756086714 179283.72788331594 198031.51446975392 192599.35173491944 196978.05454759178 200376.741274851 226625.14958273878 209822.08679607735 0.9302189525246356 0.9206491112829304 0.9397760768269775 0.8544559375084229 0.9438068103012316 0.9179174350796712 0.9387860808906715 0.9549840263937222 1.0800824309930348 1.0 17.678807024773402 1.4345822403304445 3.499021318374116 1.0389798380247484 0.9206515941897232 0.6978594154156645 0.030648062306456135 0.11564108989540207 2.54924973714456 0.021659089183128522 0.007541028193924262 27.20083526925317 -1.4345822403304445 -0.11832824383502516 ILEQEEEEEQAGKPGEPSKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILEQEEEEEQAGKPGEPSKK 20 2 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ; 171.07 4.7089e-12 1058090000.0 456460.0 302004.0 265846.0 241761.0 257541.0 407740.0 392040.0 387920.0 686200.0 395460.0 False True 454002.4700774738 312056.02057472675 303274.8060251443 272367.917811686 290337.3197848987 379553.89351671835 373075.52746176394 416868.56021784706 517095.20460891275 370221.40422966 1.2262998975495263 0.8428902732515935 0.8191714540551345 0.7356892786315715 0.7842261859197999 1.0252078598925878 1.0077092334465174 1.1259979986442124 1.3967188247391076 1.0 18.498028780999473 2.019494661930596 1.5506904175957033 1.1964490225295679 0.8760959744951111 0.37076070339833755 0.15841870731659738 0.39260307705999564 1.7656818321375005 0.10320194880806209 0.05066216526575556 104.59108347185732 -2.019494661930596 -0.32035304803445674 ILEVHIDK ddPTM_BT-474_Trastuzumab_2h_R1 4 ILEVHIDK 8 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 ;;; 98.033 0.007809600000000002 2010620000.0 6125490.0 6402750.0 5699630.0 5574320.0 5747780.0 6781740.0 6723800.0 6140910.0 8763800.0 6934520.0 False True 6092511.042445916 6615861.6632058965 6502088.361927935 6280028.3404520955 6479725.713238838 6312934.276298802 6398544.10658965 6599175.88710914 6604078.918903508 6491952.996658732 0.9384712189970568 1.0190865008743806 1.0015612197553523 0.9673557931926325 0.9981165477590199 0.972424519947685 0.9856115886672072 1.0165162764588087 1.0172715240394508 1.0 22.63022112377986 1.7588151673733734 6.910339512834963 1.0124548772724555 0.9848187571200248 0.2682518335864241 0.021060778200821022 0.20544734325247413 28.43356647482396 0.009712180358517857 0.00524268494479119 57.38721743327769 -1.7588151673733734 -0.027636120152430776 ILEVHVDK ddPTM_BT-474_Trastuzumab_2h_R1 7 ILEVHVDK 8 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 ;;;;;; 118.5 0.0018756 4970771000.0 10985610.0 11116690.0 9967290.0 9311910.0 9317580.0 11743530.0 11191110.0 10576460.0 15111230.0 11599830.0 False True 10926464.696376001 11486702.306468997 11370597.794762252 10490796.851228362 10504118.583376544 10931727.412396098 10649753.255108194 11365729.151375666 11387269.846607907 10859518.918285888 1.0061647093756048 1.0577542516296023 1.0470627548349107 0.966046187696524 0.9672729208739717 1.0066493271620551 0.9806837057188161 1.0466144252704779 1.048598002572044 1.0 23.372456856711413 -0.35366598891137313 6.68363443102491 0.9999993237114831 1.0142468310938808 0.016007279787838558 0.0331312858735674 0.0 0.0 0.0342580296473705 0.008074695024581826 0.4429288931193793 0.35366598891137313 0.014247507382397662 ILEYNNENDFLAGS(ph)PDAAIDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILEYNNENDFLAGSPDAAIDSR 22 0 A1L020 A1L020 MEX3A RNA-binding protein MEX3A 1 ILEYNNENDFLAGS(1)PDAAIDSR;ILEYNNENDFLAGS(1)PDAAIDSR 153.06 2.3616e-08 69231000.0 57264.0 66323.0 63402.0 64661.0 69626.0 63476.0 69940.0 57267.0 71720.0 67179.0 True False 56955.696986628485 68530.52096189985 72328.45049993688 72847.07597015837 78492.45839436573 59088.05352643162 66556.73500325417 61540.554335933775 54045.5669987631 62891.57870516455 0.9056172250602349 1.0896613246611384 1.1500498475163479 1.1582961895687998 1.2480599153399858 0.9395225043314012 1.058277377886662 0.978518199144525 0.8593450524135907 1.0 15.940579230140958 2.707759162387155 24.994016840860862 0.9744833748727647 1.1140589713913043 0.3681215903907692 0.09349848218416615 797.1745227085171 646871.2180439038 0.03118963399070317 0.029408115753124 510.2219783705104 -2.707759162387155 0.13957559651853957 ILFEDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ILFEDFR 7 0 A0A0A0MTR2;Q8N543;H3BR79;H3BUA6 A0A0A0MTR2 OGFOD1 Prolyl 3-hydroxylase OGFOD1 0 ;; 107.66 0.017281 86314000.0 294148.0 360892.0 325029.0 311135.0 294314.0 304468.0 318053.0 292081.0 410789.0 318034.0 False True 292564.33985091525 372904.0720561793 370790.257997287 350524.65909861 331793.1433642515 283420.8438005795 302667.5613095512 313877.56737726595 309555.5552405867 297736.79783739365 0.9826274144679178 1.2524621570620826 1.245362550717667 1.177297067895672 1.114384065974463 0.951917417864376 1.0165608131341912 1.0542115373615573 1.039695319789285 1.0 18.183678012360637 2.971246930809522 4.413340664008414 1.0194397330541418 1.1745243029686232 0.48528773412833603 0.07394046194901159 0.17536731186309207 8.056965687405777 0.022618565948257 0.025248682275710584 935.9376775870888 -2.971246930809522 0.15508456991448138 ILFHGEGDQEPELEPGDVIIVLDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILFHGEGDQEPELEPGDVIIVLDQK 25 0 Q8WW22-3;Q8WW22;Q8WW22-2 Q8WW22-3 DNAJA4 DnaJ homolog subfamily A member 4 0 ; 178.76 2.8538e-17 191164000.0 219669.0 200987.0 177899.0 174980.0 196021.0 200238.0 203494.0 203929.0 277296.0 224188.0 False True 218486.32651152034 207676.73079579306 202945.63287417224 197132.45005889633 220983.1124425065 186396.01836955105 193650.217797429 219147.21751047965 208960.1163760322 209880.12990299662 1.0410052948437825 0.9895016307250146 0.9669597258586156 0.939262092843224 1.05290154215476 0.8881070278339376 0.9226705638448536 1.0441541922609165 0.9956164810485413 1.0 17.679206062470666 1.7156569608605436 17.17415887649363 1.014812697549626 0.9706914129441304 0.13384441579682949 0.04861417346950749 0.3943022642963557 278.7850877574116 0.02276654729775342 0.012592368619578858 51.95854259266188 -1.7156569608605436 -0.04412128460549569 ILFIFIDSDHTDNQR ddPTM_BT-474_Trastuzumab_2h_R1 8 ILFIFIDSDHTDNQR 15 0 P07237;H7BZ94;H0Y3Z3;I3L398;I3L4M2 P07237 P4HB Protein disulfide-isomerase 0 ;;;;;;; 352.64 2.0179999999999996e-82 6742242300.0 1250259.2 1651156.7 1559798.4 1540784.7 1629159.0 1457329.5999999999 1673226.8 1517974.2 1702617.9 1547066.5999999999 False True 1243527.9433840557 1706114.452614198 1779404.456709263 1735847.8850397859 1836622.7418680736 1356587.8349368752 1592286.4273369035 1631253.1429208028 1283030.5324559847 1448331.4850776477 0.8585934616462391 1.1779861655929755 1.228589224941047 1.1985156042828993 1.268095571208002 0.9366556267774196 1.0993936427830526 1.1262981988086438 0.8858680113463108 1.0 20.465960404581004 2.734162234815913 24.973394076007313 1.0338601381434325 1.1555795032300982 0.21987461226352267 0.12404551881405658 658.0878983638758 3736519.07474909 0.0401056054796407 0.03903924175113124 542.2033977881904 -2.734162234815913 0.1217193650866657 ILGADLDVVMSLNNLDEESNKKHPFPCPTSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILGADLDVVMSLNNLDEESNKKHPFPCPTSYR 32 2 E7EMD0;P16435;H0Y4R2 E7EMD0;P16435 POR NADPH--cytochrome P450 reductase 0 42.355 0.08304199999999999 127310000.0 82260.0 82002.0 96927.0 73070.0 76304.0 104970.0 86918.0 55549.0 116500.0 81718.0 False True 81817.12129994517 84731.38699874422 110573.47909541316 82320.65450796403 86020.86211075877 97713.67097280128 82713.44428099577 59694.34845210651 87790.136020021 76502.68727770042 1.0694672855471554 1.107560923855839 1.4453541833640131 1.0760491877774794 1.1244162155834856 1.277258021252328 1.0811835142568347 0.7802908705078478 1.1475431667040372 1.0 16.223222805186367 1.9948203721772162 22.860252839439415 0.9463336771587758 1.1838392040462653 0.3166570237287203 0.13494509896495469 72.41269139522059 319593.98200569814 0.05075406213300932 0.03631511774946192 98.81443053906615 -1.9948203721772162 0.2375055268874895 ILGDINSDFTRVDEDEEIIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILGDINSDFTRVDEDEEIIVK 21 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 0 139.83 1.559e-07 55918000.0 20858.0 22981.0 23334.0 23022.0 24145.0 21857.0 27877.0 28148.0 35451.0 28188.0 False True 20745.702845541644 23745.908692692145 26619.22437723615 25936.58283950116 27219.72263137278 20346.07703584373 26528.483009518368 30248.546692647855 26714.576069062317 26389.017707039056 0.7861491123259164 0.8998405683875879 1.0087235786020063 0.9828551834493933 1.031479190834456 0.7710054713562369 1.0052849751372939 1.146255121295375 1.0123368882327295 1.0 14.687650028979876 2.0040760274295226 24.998280917248096 1.0707784562502323 0.922472839063655 0.3320028146898144 0.08895396429985335 123.94825400558446 760169.3928598753 0.03381737193524503 0.024876786494623243 100.94295809749569 -2.0040760274295226 -0.1483056171865773 ILGQGT(ph)HRPTPNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILGQGTHRPTPNSR 14 1 K7ELA6 K7ELA6 TPGS2 1 ILGQGT(1)HRPTPNSR 60.918 0.049397 1290900000.0 265520.0 399150.0 400520.0 442810.0 476140.0 295220.0 436180.0 384740.0 433780.0 615720.0 True False 264090.4698220453 412435.46645872924 456909.7346177521 498869.70059766737 536773.6066971142 274812.13627312914 415080.3070305886 413451.25247013406 326880.7313542032 576424.2224555877 0.45815297056221976 0.7155068270756205 0.7926622734056878 0.8654558243102011 0.9312127870172414 0.4767532757426807 0.7200951848663328 0.7172690465865869 0.5670836141508413 1.0 19.13677143604646 4.731907754306085 4.1214216264332535 0.745762292931656 0.4358330481289196 0.26307423480676917 0.14878509411711324 0.30411346545596285 11.389044156738699 0.03516201802003089 0.2771391817055047 53939.604070763104 -4.731907754306085 -0.30992924480273637 ILGQS(ph)SPEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILGQSSPEKK 10 1 P29374;P29374-3;P29374-2;H7C485 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 ILGQS(0.711)S(0.289)PEKK 65.03 0.042993 336400000.0 461440.0 362320.0 288150.0 290310.0 301050.0 447160.0 442340.0 427550.0 726140.0 464190.0 True False 458955.65831080335 374379.6021729347 328719.01535530126 327063.21623384545 339386.93303685094 416248.88170141703 420942.3242971036 459455.95205490966 547192.5267774937 434564.9967869464 1.0561266132895994 0.8615042742535504 0.7564323352910587 0.7526220902559124 0.7809808326629716 0.9578518398376453 0.9686521634495069 1.0572778651110883 1.2591730369985714 1.0 18.72921244786162 2.0353663011947645 1.4648849559827235 1.1227498990301663 0.8380976146876129 0.5345415507501412 0.10433010668533402 0.3129635928865233 1.2572151646816339 0.07102649613168373 0.03487894165759354 108.48415266365924 -2.0353663011947645 -0.2846522843425534 ILGSAS(ph)PEEEQEKPILDRPTR ddPTM_BT-474_Trastuzumab_2h_R1 5 ILGSASPEEEQEKPILDRPTR 21 2 Q7Z422-5;Q7Z422;Q7Z422-4;Q7Z422-2;Q7Z422-3 Q7Z422-5 SZRD1 SUZ domain-containing protein 1 1 ILGS(0.001)AS(0.999)PEEEQEKPILDRPTR;ILGSAS(1)PEEEQEKPILDRPTR;ILGS(0.001)AS(0.999)PEEEQEKPILDRPTR;ILGS(0.009)AS(0.991)PEEEQEKPILDRPTR;ILGSAS(0.686)PEEEQEKPILDRPT(0.314)R 233.45 4.9251999999999996e-30 3812070000.0 1035900.0 881900.0 844566.0 753051.0 775840.0 1052760.0 1035930.0 1043730.0 1424000.0 1086530.0 True False 1030322.8294993098 911253.5083801917 963473.5517007302 848387.1793879407 874638.6252360435 979985.1791304775 985818.108263099 1121618.432553551 1073074.2806224022 1017186.7251748659 1.0129141523373553 0.8958566660644701 0.9471943821672448 0.8340525474731233 0.8598604401622358 0.9634270236489834 0.9691613976712345 1.1026671945219615 1.0549432607252405 1.0 19.956153108653822 2.0874591014388697 2.2809585614402472 1.0608147449422076 0.9098043042141493 0.5455583695140789 0.0538759396818753 0.2079365624118098 2.099260547070709 0.02745902279110325 0.016170044576403992 122.30919321026163 -2.0874591014388697 -0.15101044072805836 ILGSASPEEEQEKPILDRPT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 ILGSASPEEEQEKPILDRPTR 21 2 Q7Z422-5;Q7Z422;Q7Z422-4;Q7Z422-2;Q7Z422-3 Q7Z422-5 SZRD1 SUZ domain-containing protein 1 1 ILGSAS(0.326)PEEEQEKPILDRPT(0.674)R 149.04 1.3579e-07 683690000.0 500370.0 457250.0 434740.0 393070.0 382120.0 578620.0 545460.0 536550.0 744680.0 601900.0 True False 497676.06351633347 472469.2898365383 495947.6131721802 442832.6216976248 430780.716997315 538621.3613249714 519074.01594044943 576590.0855456935 561163.5922007657 563486.2266874844 0.8832089232100255 0.8384753121899728 0.8801415006852299 0.7858801168945423 0.7644920081360403 0.9558731621379926 0.9211831476199214 1.0232549763199033 0.9958780989193426 1.0 19.104020821422576 2.4300216267504786 2.185857889388273 0.9944355769410101 0.8325331056381118 0.7302069837053835 0.044551289506815216 0.16220998189965447 1.580770124333005 0.018623089853314696 0.01484507170287622 269.1668838788955 -2.4300216267504786 -0.16190247130289837 ILHCLGLAEEIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILHCLGLAEEIQK 13 0 P53004 P53004 BLVRA Biliverdin reductase A 0 ; 220.45 2.0783e-11 3393100000.0 2460050.0 2249030.0 1963360.0 2004570.0 1812440.0 2356410.0 2473000.0 2088660.0 2977630.0 2261820.0 False True 2446805.364137248 2323887.603982654 2239784.0221689534 2258348.3564668098 2043243.4908264743 2193516.923092487 2353371.5422225827 2244526.415200579 2243832.9846978076 2117468.7111584744 1.1555331850918318 1.0974837983373302 1.057764872919213 1.0665321024891365 0.9649462492924434 1.0359146803602146 1.1114079418604703 1.0600045249181467 1.0596770440448202 1.0 21.013909221011513 4.597541093237042 1.6197771491077138 1.0471378448566306 1.177805593551221 0.47319532846457335 0.03731336283457493 0.734646932951722 2.3046844653026626 0.010542079581031507 0.13867366774600617 39585.95195586587 -4.597541093237042 0.1306677486945904 ILHGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILHGFK 6 0 O14787-2;O14787;K7ESG1;Q92973-2;Q92973;Q92973-3;S4R398 O14787-2;Q92973-2 TNPO2;TNPO1 Transportin-2;Transportin-1 0 ; 118.11 0.022145 1756040000.0 4051900.0 4253400.0 3754500.0 3672000.0 3763700.0 4328600.0 4220600.0 3980800.0 5248600.0 4410200.0 False True 4030085.0206084107 4394971.847765402 4283100.9653009875 4136874.823501356 4242984.885802345 4029374.0704283845 4016433.453742266 4277867.510092817 3955152.8576367563 4128737.260237822 0.9761059536097173 1.0644832961621404 1.0373876309712848 1.0019709569174826 1.0276713237882187 0.9759337580605181 0.9727994785289179 1.0361200629769318 0.9579570237436066 1.0 21.97726918221643 2.755296170911403 24.30715234685801 0.9932183521812408 1.0237055231229475 0.2341960388400408 0.029067957753816598 940.2533356222401 1365644.7985143901 0.008843554990573729 0.009353781075193924 569.2409973712371 -2.755296170911403 0.03048717094170672 ILHLLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILHLLGK 7 0 Q9UBF2;Q9UBF2-2;H3BS45;F5H1S1;Q92521 Q9UBF2 COPG2;PIGB Coatomer subunit gamma-2;GPI mannosyltransferase 3 0 91.26 0.016535 246630000.0 401000.0 454440.0 429900.0 388990.0 387420.0 481530.0 442050.0 375030.0 619050.0 494020.0 False True 398841.06055528816 469565.7606852193 490426.18324221385 438236.0941159568 436755.6405817531 448242.96449969424 420666.35270501114 403016.64296375256 466493.4223450126 462491.2206481988 0.8623754197891529 1.0152965931485256 1.0604010656783132 0.9475554876517494 0.9443544462738638 0.9691923748767921 0.9095661364456421 0.8714038774593593 1.0086535733396291 1.0 18.819066454017065 3.5019322415045733 24.685846431809807 0.93806133960271 0.9864560333440305 0.019227127405978428 0.060645893417423054 1449.3552972483976 1442041.2030977523 0.016351397453959648 0.02519150598480684 3176.3784543695438 -3.5019322415045733 0.04839469374132055 ILHLLGQEGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILHLLGQEGPK 11 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ; 162.36 2.5217e-05 697790000.0 1048140.0 1084160.0 1157650.0 856950.0 587850.0 915260.0 1075460.0 729230.0 1877480.0 964310.0 False True 1042496.9306993022 1120245.6102114397 1320637.0575258164 965439.7821349361 662709.2130400698 851990.2304902916 1023435.8911438328 783648.845554909 1414800.2109430807 902766.910212673 1.1547797320724922 1.2409023830387549 1.4628771198699584 1.0694230938388056 0.7340867343974198 0.9437543853812503 1.13366571101142 0.8680522476951417 1.5671821761940559 1.0 19.783994013760793 3.5038065078196423 21.924093352850843 1.014921643492914 1.2790737175622904 0.1993654264923841 0.21806143298063596 226.44198031652363 186038.56979237843 0.05685332738006217 0.08761872686836997 3190.116238897973 -3.5038065078196423 0.26415207406937635 ILHTLLASGEDALDFTQESEPS(ph)YISDVGPPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILHTLLASGEDALDFTQESEPSYISDVGPPGR 32 0 H3BVG0;Q8N1F7;Q8N1F7-2;H3BM93;H3BMX0;H3BP95 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 ILHT(0.001)LLAS(0.004)GEDALDFT(0.037)QES(0.278)EPS(0.332)Y(0.304)IS(0.043)DVGPPGR 42.319 0.08933300000000001 24187000.0 15687.0 40134.0 28035.0 30650.0 27043.0 41736.0 33049.0 29416.0 35807.0 25501.0 True False 15602.542934989546 41469.83592848465 31982.08431541165 34530.286857384715 30486.765753581043 38850.888555976264 31450.29361055972 31611.17129142136 26982.84463921794 23873.504347495487 0.6535505934899067 1.7370652973632317 1.3396476633631214 1.4463853464817036 1.2770125956300729 1.6273642943438262 1.3173723116966318 1.3241110660294668 1.1302423073908143 1.0 14.543122732046909 1.1336220576387284 2.0433857804925832 1.0005888835415095 1.3689676996614615 0.14594098958310397 0.2705657629532105 0.49764709948699376 3.903659983930899 0.23130557240528402 0.06569340536657488 13.602604081698393 -1.1336220576387284 0.36837881611995194 ILHVDNHIGISIAGLTADAR ddPTM_BT-474_Trastuzumab_2h_R1 3 ILHVDNHIGISIAGLTADAR 20 0 P25786;P25786-2;F5GX11;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 ;; 186.23 1.9396e-17 484926000.0 411963.5 523477.0 456654.0 484582.0 469701.5 503964.0 504061.0 268758.4 521930.6 458298.0 False True 409745.53428944794 540900.6154964718 520946.913892277 545930.0315146876 529515.2018860935 469126.1548836507 479677.64372998744 288814.5165355028 393307.7971417263 429049.0292713415 0.9550086501426728 1.2606965139044575 1.2141897040928087 1.2724187546627161 1.2341601210131503 1.0934091977328853 1.1180019321908945 0.6731503787014728 0.916696625114582 1.0 18.7107829945274 1.8904781464671443 6.0591709042056 0.8365176153545238 1.1787936706006632 0.5798747018007543 0.11719208124019603 0.14287809411479463 6.7324477217073895 0.05051241123253004 0.03063288729808454 77.71022143224916 -1.8904781464671443 0.34227605524613935 ILIEELR ddPTM_BT-474_Trastuzumab_2h_R1 3 ILIEELR 7 0 C9JEV6;Q9UJ70;Q9UJ70-2;H7C3G9;H0YEB7;H0YE82;H7C1L7 C9JEV6 NAGK N-acetyl-D-glucosamine kinase 0 ;; 139.92 0.006187300000000001 439423000.0 389112.0 534874.0 463525.0 483702.0 452251.0 442666.0 439700.0 406048.0 519224.0 442990.0 False True 387017.0642264069 552676.9577518393 528785.2909684752 544938.6236049169 509842.4841483111 412065.5413436794 418430.03118288267 436349.36362996564 391268.2024451444 414717.9989371797 0.9332053714047535 1.3326572735406097 1.2750478453397778 1.3139980058773928 1.2293714896746997 0.9936041898343022 1.0089507382250493 1.0521592136059246 0.9434560434991215 1.0 18.661771136616576 2.7412801923419408 23.709322721426666 1.0076852531710556 1.2319190785186875 0.5046805389915627 0.10693168934381865 94.16554971284897 820938.2680455587 0.032507973170128476 0.03306992311585985 551.1631738533613 -2.7412801923419408 0.22423382534763192 ILIPS(ph)DIESSK ddPTM_BT-474_Trastuzumab_2h_R1 5 ILIPSDIESSK 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(1)DIESSK 218.4 1.1164000000000002e-11 1764269000.0 5912060.0 5511350.0 4628930.0 4824690.0 4772160.0 6435280.0 5735360.0 5693630.0 7922580.0 5992590.0 True False 5880230.125851615 5694791.953068574 5280643.108619174 5435495.259313389 5379866.289191634 5990424.240619681 5457918.725597134 6118517.582267327 5970166.3161330195 5610137.775685577 1.0481436215945752 1.0150895006090386 0.9412679901562422 0.9688701911869096 0.9589543972534966 1.0677855839088786 0.972867145839419 1.0906180608941685 1.0641746343570762 1.0 22.419604770792397 2.738128212101068 24.99998792631043 1.0428990083631007 0.9845669322139041 0.2768780365699378 0.0422429886531612 49.25893452241069 2847841.0149539034 0.013639572867901866 0.013591257850268691 547.1774763884459 -2.738128212101068 -0.058332076149196554 ILIQHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILIQHQK 7 0 J3QRS9;O43670-2;O43670;O43670-4;X6R4W8;O43670-3 J3QRS9 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 ; 137.83 0.0028447 1420410000.0 2015560.0 1931990.0 1852960.0 1705510.0 1527870.0 1813220.0 1956080.0 1835290.0 2426300.0 1978840.0 False True 2004708.4489097698 1996295.119237384 2113840.6617829544 1921427.3911301203 1722435.1881050135 1687876.3692607672 1861456.9374487447 1972248.6592137883 1828370.8757543091 1852548.7370298433 1.0821353354103285 1.0775938464312722 1.1410445617598355 1.0371804815298458 0.9297651142320614 0.9111103721713188 1.00480861865647 1.0646136427027868 0.9869488662876972 1.0 20.821080066914046 3.4876895019055123 9.129225244930948 0.9890712779596843 1.096624307327635 0.6014465908108582 0.042684138297444975 0.15319163861957052 108.53625987697 0.013551015509275663 0.019683885171231364 3073.8983505900287 -3.4876895019055123 0.10755302936795064 ILKEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 ILKEQER 7 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 84.743 0.019445 1311160000.0 1386300.0 1980020.0 2189800.0 1896970.0 1337830.0 1732400.0 2310200.0 1660840.0 3342500.0 1943130.0 False True 1378836.3148324103 2045923.7687526355 2498104.805917189 2137126.207499282 1508194.720560343 1612643.2656309495 2198446.8001789763 1784780.314374635 2518785.6622053212 1819117.7798027124 0.757969786311444 1.12467911174752 1.3732507227696462 1.1748146443442813 0.8290803032687143 0.8864974459244989 1.2085236176502012 0.981124110923812 1.384619341403221 1.0 20.794807523438575 -1.2819042942037273 4.9319253930141125 0.9999775267554437 1.078210977357507 0.013471444157709844 0.204989738309579 4.9966846828356863e-05 7.275030878509895e-06 0.19578432589994396 0.046133554783721234 0.05225113225193274 1.2819042942037273 0.07823345060206333 ILKS(ph)PEIQR ddPTM_BT-474_Trastuzumab_2h_R1 4 ILKSPEIQR 9 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 1 ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR 134.68 0.00014654 2238380000.0 3497180.0 3182670.0 2868700.0 2842150.0 2707800.0 3647350.0 3726440.0 3589700.0 4767160.0 3786820.0 True False 3478351.5714532286 3288603.2469853563 3272588.024812603 3201965.898587795 3052622.2796119745 3395217.27943838 3546177.8608167935 3857581.642127257 3592357.2946712696 3545141.9055402847 0.9811600393251741 0.9276365614154924 0.923119049112889 0.9031982312425406 0.861071957328814 0.957709837829734 1.000292218281838 1.0881317997732889 1.0133183354542727 1.0 21.757411946386082 2.2243930657377873 2.7970720911247198 1.042892499659845 0.9189536424321085 0.65287829963199 0.036341970929155566 0.14546138518219437 2.339003453802377 0.01544762374957086 0.011022098630980364 167.64594982860444 -2.2243930657377873 -0.12393885722773645 ILLDHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILLDHEK 7 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 110.63 0.0067597 252860000.0 142720.0 165650.0 193720.0 117270.0 80388.0 117110.0 165940.0 91557.0 298560.0 139620.0 False True 141951.6113776828 171163.56011246025 220994.09215557526 132116.36997603593 90624.93530299426 109014.46134728739 157912.84824764085 98389.44825702571 224983.8884990339 130709.33206530426 1.086009767892944 1.309497626588318 1.6907292590644059 1.0107646323984634 0.6933317910133359 0.8340220214178908 1.208122218609038 0.7527346877411089 1.7212534479682653 1.0 16.99600262126039 3.586102630372428 12.224703089845427 0.9942211551752892 1.3566280035259914 0.19033319043252417 0.3059343658077374 1.0007899716966138 107.56630708546315 0.07929413863309138 0.12284854062771586 3855.694628120545 -3.586102630372428 0.36240684835070225 ILLDHEKEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILLDHEKEWK 10 1 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 99.752 0.0026924 1290200000.0 289250.0 279420.0 248290.0 268940.0 223250.0 268320.0 330290.0 344140.0 460510.0 445710.0 False True 287692.710138696 288720.3257870428 283247.07382463175 302987.7764249607 251679.56419357928 249771.66995734055 314312.6108696713 369821.4743075117 347023.4810178531 417264.40620847134 0.6894734030943453 0.6919361476588395 0.6788191602499577 0.7261289770150767 0.6031656677369134 0.5985932810011861 0.7532696443622275 0.886300074496993 0.831663271188473 1.0 18.670602334466224 1.8484511254649663 2.701601919739044 0.9007069287026839 0.6665690177515008 0.7987774283685967 0.053968991273946734 0.11977291343855404 1.5865403191241056 0.030597815321625716 0.01526253824290892 70.54254525720442 -1.8484511254649663 -0.23413791095118308 ILLENY(ph)VRSIENER ddPTM_BT-474_Trastuzumab_2h_R1 6 ILLENYVRSIENER 14 1 H0Y9S3;A0A494C037;E7EUS2;Q8TBZ0-2;Q8TBZ0 H0Y9S3 CCDC110 Coiled-coil domain-containing protein 110 1 ILLENY(0.997)VRS(0.003)IENER;ILLENY(0.998)VRS(0.002)IENER;ILLENY(0.997)VRS(0.003)IENER;ILLENY(1)VRSIENER;ILLENY(0.994)VRS(0.006)IENER;ILLENY(0.996)VRS(0.004)IENER 101.53 0.0016164 2536500000.0 6155890.0 3713360.0 2414180.0 1999580.0 1855810.0 2574830.0 2237200.0 1995090.0 4511370.0 2476560.0 True False 6122747.372223674 3836956.9428264806 2754075.5595712652 2252726.6229784456 2092136.403252349 2396838.062597865 2128978.0890660565 2143973.7466617445 3399603.312760877 2318503.8205103083 2.6408183234634666 1.6549280224959722 1.1878675959934741 0.9716294633849751 0.9023648720112373 1.0337865486330382 0.918255156723211 0.924722973365578 1.4662918743919153 1.0 21.14476267336106 4.730260413573692 1.4918360064618956 1.0092465447644545 3.277010970276847 0.9089305528191725 0.15588788270375165 0.287776278648481 0.5965474072665498 0.04132096880724238 0.9625778162188643 53735.3910309844 -4.730260413573692 2.2677644255123925 ILLTQENPFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILLTQENPFFR 11 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 136.57 0.00022455 216162000.0 156063.0 185977.0 199251.0 182594.0 178151.0 213995.0 230382.0 202535.0 222143.0 216212.0 False True 155222.7741482293 192167.13201952947 227303.80887926128 205710.38167821532 200837.47386629492 199202.0293400455 219237.54251529425 217649.1901518911 167398.83421369546 202413.16505159374 0.7668610592036544 0.9493805996786197 1.1229694907508763 1.0162895364329743 0.9922154708420414 0.9841357368690433 1.0831189881320817 1.0752719078149575 0.8270155460047603 1.0 17.626943601114153 4.663778973164864 3.4457301659528756 1.0209271953051842 0.7532232868983255 0.4788522482930917 0.07632219254354483 0.20149326186761463 3.9637538144406532 0.01809516079577001 0.12309510606422021 46108.28545125076 -4.663778973164864 -0.26770390840685865 ILLVDS(ph)PGMGNADDEQQEEGTSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 ILLVDSPGMGNADDEQQEEGTSSK 24 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 1 ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK 329.6 5.591699999999998e-87 467728000.0 638958.0 637365.0 552588.0 520479.0 556297.0 673000.0 633470.0 644550.0 810280.0 693040.0 True False 635517.9211229074 658579.3087297207 630387.5872190004 586371.5880340859 627138.1255193533 626477.0940715935 602826.6360095992 692649.5939585819 610597.3511957296 648809.593858604 0.9795137543255977 1.015057907533417 0.9716064515476042 0.9037652858164652 0.9665981074503446 0.9655792700995764 0.9291271918845486 1.0675699011157533 0.9411040727132003 1.0 19.307435627083702 1.7595388916762476 24.999999999875286 1.0091914722979667 0.9621672573936436 0.17909998746395028 0.039811496191808085 15.075502335317669 17980.966789898557 0.01835498977181618 0.010179324331284574 57.48292933051918 -1.7595388916762476 -0.04702421490432307 ILLWDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILLWDTR 7 0 Q9BQA1;Q9BQA1-2;H0Y711 Q9BQA1 WDR77 Methylosome protein 50 0 ; 97.473 0.027851 464630000.0 667490.0 843150.0 841950.0 751890.0 663100.0 703460.0 765170.0 649250.0 1103120.0 787800.0 False True 663896.30800511 871213.7380550617 960489.2416394096 847079.1969069819 747541.8544983756 654831.4659667203 728155.8038667418 697700.3318246978 831270.85705069 737521.9295304869 0.9001716171717801 1.1812716384035986 1.3023195693324883 1.1485478098885007 1.0135859349623235 0.8878806714040244 0.9873005462092392 0.9460062187830267 1.1271134101461695 1.0 19.49232642163529 3.1868033629521095 4.700031862592814 0.9804883415252462 1.149168788956237 0.2773011760037991 0.1088200575815538 0.23277630263454155 10.787080951315826 0.03212853943676604 0.03971144950540433 1537.4583622288935 -3.1868033629521095 0.16868044743099075 ILMAIDSELVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILMAIDSELVDR 12 0 O43592;F8WDU6 O43592 XPOT Exportin-T 0 110.14 0.003542 14260000.0 20622.0 26028.0 23587.0 24820.0 27939.0 26894.0 23066.0 21793.0 27106.0 22538.0 False True 20510.9734433196 26894.326245741726 26907.84457812073 27962.209455148055 31496.86604257297 25034.88108166632 21950.20945932312 23419.30432261172 20426.089501791317 21099.60554424742 0.9721022224944719 1.274636447081551 1.2752771383186765 1.325247971887875 1.492770373195922 1.1865094363572977 1.0403137354057126 1.1099403860181045 0.9680792116684982 1.0 14.364928407644113 2.3812568336876327 4.334465672269398 1.0473848049839123 1.2776072456510428 0.4439197287527207 0.1246792909647839 0.21436972355737138 7.291582909269882 0.045829683707004965 0.037889568296686445 240.57851160192308 -2.3812568336876327 0.2302224406671305 ILMEHIHK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILMEHIHK 8 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 ; 128.69 0.00064934 7458300000.0 9065700.0 9842900.0 9722600.0 8336900.0 7336600.0 9673500.0 10104900.0 467160.0 13602400.0 5218600.0 False True 9016891.278493948 10170514.97634129 11091457.569645835 9392350.685198389 8270872.522564891 9004793.71396963 9616087.382533357 502021.85139041324 10250270.782821735 4885544.480131761 1.8456266881129217 2.0817567044373724 2.27026027800011 1.9224777756900253 1.6929274835589725 1.8431504923534692 1.9682734282001695 0.10275658187782458 2.0980815596924605 1.0 22.220087924765 1.7855458424823425 24.999999999998163 0.9741209159191514 1.94938466885962 0.4171855866009736 0.47250600387842884 79.01182994187967 42054.060819974016 0.20453215154907 0.11444332146468578 61.03034745704199 -1.7855458424823425 0.9752637529404685 ILMVGLDAAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILMVGLDAAGK 11 0 P61204;F5H423;P61204-2;F5H0C7;F5H1V1;F5H6T5;F8WDB3;P84077;P84085;C9J1Z8;P18085;C9JPM4 P61204;P84077;P84085;P18085 ARF3;ARF4;ARF1;ARF5 ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 ; 157.96 7.0598e-05 353460000.0 816880.0 845270.0 787120.0 692580.0 738670.0 826270.0 973160.0 838820.0 1185560.0 910500.0 False True 812482.0088438995 873404.3009734954 897939.6542303122 780260.5569881735 832735.246059894 769151.8997303648 926084.5329677829 901417.0078416534 893394.6236900942 852391.1104817325 0.9531798242061931 1.0246520526004632 1.0534362022180612 0.9153785714015786 0.9769403221360087 0.9023462237841444 1.086454940202746 1.057515730463465 1.0481041070280384 1.0 19.70115602188545 2.218986801132892 24.999998084479884 1.0545172273446872 0.9749184673134159 0.38886630923053356 0.04687124519568742 251.29313497675258 320953.63426165615 0.01788967298518551 0.013231011260335759 165.57196428770948 -2.218986801132892 -0.07959876003127131 ILNDLS(ph)SDAPGVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILNDLSSDAPGVPR 14 0 P16220-1;P16220;P16220-3;H7C3I0;C9J896;E7EWP8;C9J4L5;C9JBT4 P16220-1 CREB1 Cyclic AMP-responsive element-binding protein 1 1 ILNDLS(0.5)S(0.5)DAPGVPR 99.481 0.00227 21069000.0 63935.0 53799.0 50620.0 55558.0 73798.0 65755.0 52676.0 49866.0 75930.0 65258.0 True False 63590.781063846305 55589.66719281774 57746.85600307251 62591.63710350991 83195.7378649844 61209.51162062053 50127.860638138605 53587.25413441727 57218.068909872854 61093.178569815296 1.0408818554296833 0.9099161067432705 0.9452259213699494 1.024527427918687 1.3617844056012083 1.0019041905091302 0.8205148563493733 0.8771397296537699 0.9365705018030107 1.0 15.898723682786637 2.4565065991874695 14.886689965720395 0.8954978460662829 1.0545139762353772 0.24636414786235483 0.12121044126729012 3.529353828093651 2545.29806006591 0.045020917537035916 0.03773250012929394 286.0925832610509 -2.4565065991874695 0.15901613016909433 ILNDVQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 ILNDVQDR 8 0 O00148;Q13838-2;Q13838;A0A0G2JJZ9;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ;;; 197.5 0.00033392 2626870000.0 1648210.0 1841160.0 1718640.0 1752290.0 1951290.0 1843950.0 1705870.0 1715590.0 1839520.0 1690830.0 False True 1639336.220493345 1902441.8975952775 1960609.5733133275 1974129.7343336563 2199775.2152980464 1716482.0766914028 1623350.5510437686 1843616.037389503 1386194.9443051408 1582919.7818076084 1.0356407439809188 1.2018561644499712 1.2386032418360569 1.247144521802177 1.3896946898888474 1.084377172121302 1.025541893973926 1.1646932829939074 0.8757202735328643 1.0 20.594156714678764 1.8894974717386146 1.0760143836220328 0.9787243924720248 1.2155781446798946 0.4240954061702292 0.10802988760311952 0.5192743231258987 1.106119958233868 0.09037927942887579 0.03924136416508353 77.53494296210843 -1.8894974717386146 0.23685375220786975 ILNEDGSPNLDFKPEDQPHFDIKDEF ddPTM_BT-474_Trastuzumab_2h_R1 1 ILNEDGSPNLDFKPEDQPHFDIKDEF 26 2 Q9UMX5 Q9UMX5 NENF Neudesin 0 231.68 1.6347999999999998e-35 65922000.0 102450.0 81177.0 66792.0 58982.0 63238.0 111810.0 110240.0 97040.0 158780.0 97772.0 False True 101898.42058326505 83878.92737246731 76195.7330335286 66449.11515243932 71290.9844590081 104080.8378724292 104907.27004230389 104281.61755913541 119650.79654299493 91532.10725317952 1.1132533013952373 0.9163880291803687 0.8324481465587782 0.7259650973470962 0.7788631399233048 1.1370964899184464 1.1461253672673395 1.1392900337221616 1.3072002834157264 1.0 16.481990274310597 2.7235867085571677 21.59937146059109 1.1531418275431076 0.8653086128785629 0.5698663931824149 0.11821163777610291 97.53964123942363 140696.68550126793 0.03944047607240841 0.037394454666162986 529.1596354122053 -2.7235867085571677 -0.2878332146645447 ILNHSVDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILNHSVDKK 9 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 116.3 0.00086689 610290000.0 958530.0 888030.0 812750.0 777880.0 775030.0 1087000.0 1040500.0 893420.0 1515200.0 1083000.0 False True 953369.3809826946 917587.5417245299 927178.1354503599 876359.5282421667 873725.4765372892 1011858.2485227667 990167.0399040014 960091.5370948357 1141799.2626397917 1013882.0127970512 0.940315903575982 0.9050239871532305 0.9144832670346951 0.8643604652029542 0.8617624787788625 0.9980039449869503 0.9766097311188843 0.9469460203226006 1.1261658143927893 1.0 19.951458342516936 2.0007161961686566 0.9944320117512405 1.0381524723057531 0.9005537153192487 0.5421180885818744 0.0501561781636844 0.4391278431281889 0.7996145305007811 0.04071613002561919 0.019271475910046007 100.16504631391113 -2.0007161961686566 -0.13759875698650448 ILPEAHQR ddPTM_BT-474_Trastuzumab_2h_R1 4 ILPEAHQR 8 0 P26640;A0A140T936 P26640 VARS Valine--tRNA ligase 0 ;;; 168.08 0.00030891 849210000.0 772870.0 973960.0 1062970.0 988490.0 759440.0 864340.0 976690.0 821340.0 1248800.0 1049000.0 False True 768708.9537939302 1006377.6698287476 1212626.9364991304 1113632.7326478376 856150.182446459 804590.2102375064 929443.7733818744 882632.561480013 941049.9730626782 982051.9219059165 0.7827579546935348 1.024770327698785 1.234789026374212 1.133985594658331 0.8717972678928076 0.8192949805301522 0.9464303797482083 0.8987636415058834 0.9582486954827564 1.0 19.905439777485878 3.228527119532477 24.998093213156775 0.9077024673370987 1.0563191524067108 0.22143091551712857 0.11639297262434138 282.8895327941243 704807.7412920685 0.035047605180179894 0.04235051912461991 1692.4939289728648 -3.228527119532477 0.14861668506961212 ILPKPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILPKPTR 7 1 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 ; 91.626 0.014834 4394900000.0 3896800.0 4174400.0 3828100.0 3694100.0 3502400.0 4036200.0 4023000.0 3907900.0 4688300.0 4101500.0 False True 3875820.0617751842 4313342.380521912 4367063.20555832 4161772.6812353986 3948409.8796487856 3757186.994192821 3828392.1206475757 4199527.341914116 3532931.28500141 3839738.758529183 1.0093968120007786 1.1233426677637162 1.1373334177638503 1.0838687064298018 1.0283016965355292 0.9785006820703647 0.9970449453478044 1.0937013182435231 0.9200967844892407 1.0 21.87257672803225 3.213268462458361 3.724236152320748 1.010521764796305 1.0957390147128205 0.39693586215174814 0.051409332627360096 0.2462492038522277 7.27053826337958 0.015355688588225311 0.019647461259592835 1634.0617435306638 -3.213268462458361 0.08521724991651558 ILPPGLLAYLESSDLVPEKDADR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILPPGLLAYLESSDLVPEKDADR 23 1 O75165 O75165 DNAJC13 DnaJ homolog subfamily C member 13 0 130.83 3.0169e-05 90124000.0 97244.0 90272.0 79217.0 80534.0 83988.0 103570.0 101440.0 92021.0 132490.0 102920.0 False True 96720.44910882399 93276.64894942375 90370.06503349269 90729.59614266297 94683.37396412251 96410.44967755575 96532.95966156847 98888.07429317001 99839.61477504356 96351.55748575489 1.0038286005197543 0.9680865715451901 0.937920126997983 0.9416515779319592 0.9826864913742674 1.0006112220013628 1.0018827114013222 1.0263256440643436 1.0362013586527064 1.0 16.556020366867685 2.606422375393373 1.5906265899070138 1.0201534528981486 0.9620137099246825 0.5960098725055962 0.019675608016455962 0.2613948462569639 1.3316860873448935 0.008970408982769039 0.0077670941850842235 404.03815138625055 -2.606422375393373 -0.058139742973466135 ILQDSNDS(ph)PLAEREPGEVIDSLVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILQDSNDSPLAEREPGEVIDSLVGK 25 1 A0A1W2PR54;Q5JUX0 A0A1W2PR54 SPIN3 Spindlin-3 1 ILQDS(0.003)NDS(0.997)PLAEREPGEVIDSLVGK;ILQDS(0.212)NDS(0.788)PLAEREPGEVIDSLVGK 125.47 8.5715e-05 113489000.0 116986.0 128393.0 119159.0 108837.0 117984.0 159446.0 135139.0 122293.0 195080.0 141258.0 True False 116356.1603743666 132666.4833897924 135935.55145140478 122615.75304069095 133008.56305404357 148423.87331551153 128601.81028888695 131419.1246512712 147005.1479380747 132242.79350294164 0.879867683464947 1.00320387883247 1.0279240769999387 0.927201776314287 1.005790633506883 1.1223588778182454 0.972467435709654 0.9937715407406899 1.1116306911257487 1.0 17.012829580058938 5.625469169917584 1.2856497652120749 1.0185797577461027 2.0585214371188996e-12 0.35514663813904845 0.055975884925191365 13.679706483478943 3.4650023020762486 0.015425602037408902 31.545555956904654 422152.30986428325 -5.625469169917584 -1.018579757744044 ILQEAWTEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILQEAWTEGR 10 0 A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2 A0A087WTA5 EIF2B4 Translation initiation factor eIF-2B subunit delta 0 99.815 0.010325 81668000.0 28570.0 33501.0 31276.0 35688.0 31736.0 34294.0 30146.0 32776.0 37235.0 37440.0 False True 28416.182294425413 34616.06053321784 35679.38894413463 40206.09714082693 35777.391485990745 31923.33649939261 28687.722811096628 35221.911553155645 28058.933173437592 35050.54714600333 0.8107200773801785 0.9876039991337187 1.0179409980538066 1.1470890018734405 1.0207370326334633 0.9107799763129432 0.8184671894449377 1.0048890651104103 0.8005276795411462 1.0 15.09714934471729 2.7314287033549216 22.251769212823397 0.9079952616926615 1.005828184735167 0.17067203546389054 0.09805534223825638 215.86238427445295 673492.8738592066 0.03180525148675578 0.030655045228907194 538.801384925158 -2.7314287033549216 0.09783292304250557 ILQEHEQIK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILQEHEQIK 9 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 161.17 6.4735e-05 770330000.0 1196890.0 1180850.0 1193670.0 1028820.0 973420.0 1283320.0 1296250.0 1093530.0 1824730.0 1318340.0 False True 1190446.0772269801 1220153.878411102 1361728.3604343657 1159068.506512708 1097379.2670876333 1194607.1090103386 1233545.4353441256 1175134.7614328272 1375049.7416292944 1234202.4125123401 0.96454687266711 0.9886173175819347 1.1033266072316565 0.9391235139083146 0.889140432689489 0.9679183065106789 0.99946769090584 0.9521410341766592 1.1141201213747798 1.0 20.235147589079304 -0.9028276081442088 5.281678242625813 1.000000021252407 0.9867468330794279 0.0 0.06619669187133224 1.6032218821567584e-08 3.392550864360039e-09 0.06328836923926064 0.014917187902076023 0.12507554151983155 0.9028276081442088 -0.013253188172979047 ILQEYVEHQVDDAMMANAAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILQEYVEHQVDDAMMANAAQK 21 0 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 237.14 7.5224e-30 170780000.0 155090.0 160330.0 159030.0 151340.0 167070.0 190720.0 162070.0 179620.0 211820.0 181840.0 False True 154255.0126721188 165666.48712846843 181420.04168646014 170499.62848276005 188345.37419852772 177535.97530658892 154230.05493247637 193024.15649187905 159619.7992425822 170234.8155189434 0.9061308181988991 0.9731645470020402 1.0657046922712003 1.0015555746514566 1.1063857509075106 1.0428887578923776 0.9059842104702369 1.1338700365343288 0.9376448569348027 1.0 17.37716659395173 4.522308837319523 3.4013318786105717 1.0308180440237162 0.9100551527947356 0.22948235092548686 0.06634097419913773 0.32515161994430003 7.100761340138384 0.015409279091292923 0.07506482421291152 33289.619968792256 -4.522308837319523 -0.12076289122898065 ILQGGVGIPHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILQGGVGIPHIR 12 0 P48729-2;A0A5F9W493;U3KPX3;A0A590UJ43;P48729;P48729-3;A0A590UK94;A0A590UJQ7;E5RG27;D6RGE5 P48729-2 CSNK1A1 Casein kinase I isoform alpha 0 146.16 6.4507e-05 362360000.0 163810.0 209470.0 188760.0 194550.0 180070.0 175950.0 197710.0 177460.0 213050.0 188850.0 False True 162928.0651610019 216442.08232271086 215335.76726866813 219180.01005233917 203000.84714149102 163786.99064174888 188146.01197445497 190702.96632362087 160546.6822237378 176797.43131738048 0.9215522190959845 1.2242377092807515 1.2179801802782133 1.2397239508467461 1.1482115188487727 0.9264104654763015 1.0641897372179685 1.0786523588189336 0.9080826628953114 1.0 17.43173778846142 2.851487321588239 7.0815357203085885 1.012805212187893 1.164642198048333 0.3732569560080182 0.09837348930485927 0.2895268924892144 16.23068059975156 0.030099373088053803 0.03197941947051869 710.3744316528536 -2.851487321588239 0.15183698586044003 ILQINKDDVTALHCK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILQINKDDVTALHCK 15 1 O76094-2;O76094;R4GNC1;D6RDY6 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 ; 201.24 3.9143e-09 1898550000.0 2971600.0 2969500.0 2756400.0 2458800.0 2495200.0 3376400.0 3122400.0 3061800.0 4589700.0 3501300.0 False True 2955601.2357757995 3068338.012399343 3144477.1609417037 2770083.8278935594 2812948.9297909033 3142997.4151906786 2971357.5832736758 3290287.063505373 3458629.933829101 3277844.036386259 0.9016906243758552 0.936084199961542 0.9593126231864317 0.8450932372449018 0.8581704616099152 0.9588611844557908 0.9064975484768711 1.0037961010289045 1.0551539046507392 1.0 21.644315780294466 1.6608158775889552 3.4700524722994723 1.0288582716314305 0.9092670458904226 0.6461529214744999 0.037577885211735454 0.12329420999888197 3.4963945151017013 0.02332616872536465 0.01043140797470128 45.794769518429966 -1.6608158775889552 -0.11959122574100789 ILQLCMGNHELYMR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILQLCMGNHELYMR 14 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 216.15 1.3861e-08 1246880000.0 742110.0 926800.0 994770.0 822920.0 652430.0 843100.0 859250.0 643040.0 1227450.0 888190.0 False True 738114.5622161715 957647.977737569 1134824.9693041581 927101.5876241118 735513.0932444204 784818.4814439234 817684.7948462417 691026.910090958 924961.3944873371 831504.9537822842 0.8876851050119355 1.1517044767821232 1.3647843757781066 1.1149682072331442 0.8845564778643548 0.9438530436577713 0.9833793426326826 0.8310556743500677 1.1123943282357436 1.0 19.66536533298946 3.3294156203337613 6.020285650227458 0.9441726710787606 1.1520187541885427 0.2902436918760968 0.12840871279007596 0.22959585709614586 12.348483024384853 0.036065811231833174 0.048884229630177856 2135.087216743436 -3.3294156203337613 0.20784608310978214 ILRPWQSSETR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILRPWQSSETR 11 1 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 0 ; 179.6 6.4123e-06 2308500000.0 1677030.0 1964540.0 2463230.0 1703250.0 956580.0 1298030.0 1835460.0 1264680.0 2900700.0 1558170.0 False True 1668001.056815551 2029928.5263104942 2810031.3732210225 1918881.2753618439 1078394.7929061335 1208300.241333954 1746671.7876618938 1359056.843514918 2185861.3523886213 1458726.2565835465 1.1434640661930242 1.391576052839927 1.9263596309031557 1.3154498773855057 0.7392715309257682 0.8283255586033598 1.1973951793756963 0.9316736689842943 1.4984726178221288 1.0 20.476277742968573 3.4690146291219195 23.920126395235133 1.0247390228251436 1.5014654003896604 0.37791814456107997 0.26539640459796027 106.65290549164588 314697.2083705354 0.0736000967807488 0.09985867365019811 2944.5208177173713 -3.4690146291219195 0.47672637756451675 ILS(ph)PSMASK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILSPSMASK 9 0 Q9Y6A5;A0A494BZT8;E7EMT0;C9JA91;C9JWI7;Q8IX09 Q9Y6A5 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 ILS(0.994)PS(0.006)MASK;ILS(0.703)PS(0.297)MASK 104.94 0.0033337 799910000.0 1389110.0 1487170.0 1338160.0 1212700.0 1199970.0 1675670.0 1568560.0 1317380.0 2107800.0 1643010.0 True False 1381631.1861046315 1536669.5544367523 1526561.2965047695 1366227.6956590666 1352779.0667205807 1559834.877002895 1492682.7603189065 1415689.5851200942 1588360.9330729614 1538151.6951483705 0.8982411750821229 0.9990364144731023 0.9924647232908436 0.8882268894338669 0.8794835197253359 1.0140969072965413 0.9704392388781407 0.9203835938844358 1.0326425788060831 1.0 20.5527663606904 2.720735137667134 24.84082378561109 0.9760724839354397 0.9362270031097897 0.23994081540622325 0.047356106096844805 1638.9241550656461 2283930.5520752487 0.016301458644155536 0.015400395241646273 525.6965630645642 -2.720735137667134 -0.03984548082564998 ILSCGEVIHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILSCGEVIHVK 11 0 Q9H2U2-2;Q9H2U2;H0Y9D8;D6R967;D6RGV9 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ; 160.36 2.7577e-05 1117330000.0 1660740.0 1827490.0 1683790.0 1729060.0 1768690.0 2326900.0 1852430.0 1645570.0 2337490.0 1981050.0 False True 1651798.7603655588 1888316.8999089662 1920852.9962349553 1947958.8187154843 1993922.1876530412 2166046.879933418 1762820.8839302 1768370.7894351447 1761446.910261275 1854617.6929377664 0.8906411098392268 1.018170433237817 1.0357137233993872 1.0503290387734106 1.075112242941354 1.16792096192199 0.9505036486187308 0.9534961281610529 0.9497628093211457 1.0 20.82269039264097 ILSDDVPIRDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILSDDVPIRDYR 12 1 P54725-2;P54725;A0A494C0B4;K7ENJ0;K7ELW1;P54725-3 P54725-2;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 0 79.82 0.020068 259970000.0 260420.0 391100.0 348950.0 383750.0 339660.0 376400.0 352450.0 309500.0 421960.0 374100.0 False True 259017.9276553822 404117.5270750573 398079.126872227 432332.7106532261 382913.68767745193 350380.3539502936 335400.64701025083 332596.46160915564 317973.6119743176 350224.61771687615 0.7395765875737895 1.1538809856072099 1.1366394785932403 1.234444093255394 1.0933374420498385 1.0004446752899117 0.9576729619886141 0.9496661421957173 0.9079133672761105 1.0 18.417920970572073 2.549012126861215 3.0565719759696477 0.9508364228425806 1.0883850330945912 0.16101771700892875 0.12412465961404198 0.42706584749204685 7.826784877671122 0.04424973427807491 0.03977831008148304 354.0072259351668 -2.549012126861215 0.1375486102520106 ILSDVTHS(ph)AVFGVPASK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILSDVTHSAVFGVPASK 17 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 ILS(0.257)DVT(0.326)HS(0.417)AVFGVPASK 65.78399999999999 0.027382 26235000.0 141690.0 69679.0 60014.0 73730.0 59135.0 84395.0 65388.0 78350.0 135660.0 83530.0 True False 140927.15678323907 71998.22339315507 68463.44954896075 83064.21044029272 66665.49172939443 78560.97229446075 62224.93263358284 84196.87485323857 102228.41075086717 78199.04388636904 1.8021595889077646 0.9207046507854447 0.8755023865566046 1.0622151667352002 0.8525103174696868 1.004628297100635 0.7957249800138456 1.076699543482718 1.3072846632167932 1.0 16.25486334783877 4.741134059834198 24.984542254481827 0.98135300582186 1.8021598820850735 0.7594103096213729 0.13736497016362254 109.82025888625869 1066140.2645766162 0.0324529055863145 0.2212552568104434 55097.774826999834 -4.741134059834198 0.8208068762632135 ILSHGGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ILSHGGFR 8 0 Q12905;B4DY09 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ; 160.54 0.00035277 688660000.0 402900.0 496020.0 472930.0 516650.0 480350.0 490090.0 490550.0 422120.0 571800.0 498680.0 False True 400730.83116639854 512529.7258495777 539514.4332187488 582057.8370266814 541519.7252424894 456211.23184776696 466820.22241701925 453620.7378819276 430887.5517274503 466853.8154585729 0.8583646912530334 1.0978377146733589 1.1556389074143136 1.2467667988424769 1.1599342391805774 0.9772036058003465 0.9999280437677892 0.9716547725680533 0.9229603303213999 1.0 18.83261134829311 2.724316847548528 21.986639325473618 0.9746815635078488 1.1142150167849791 0.3119038609226289 0.09543206518013013 198.9416861034067 307083.98323761125 0.032354028491630354 0.030693130586708004 530.0500106214953 -2.724316847548528 0.1395334532771303 ILSLES(ph)QLEDS(ph)ARR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILSLESQLEDSARR 14 1 H0YMB8;Q8N5R6-4;Q8N5R6-5;Q8N5R6-6;Q8N5R6;Q8N5R6-2 H0YMB8 CCDC33 Coiled-coil domain-containing protein 33 2 ILS(0.002)LES(0.999)QLEDS(0.999)ARR 58.699 0.035923000000000004 0.0 52383.0 60259.0 48555.0 44577.0 53360.0 61196.0 58175.0 52670.0 61358.0 58771.0 True False 52100.975748298435 62264.684387665286 55391.12195237429 50220.44362941721 60155.079710501166 56965.66455988894 55360.85299991861 56600.50285284077 46237.1430550768 55020.184463615464 0.946942949323489 1.1316698588831626 1.006741843786513 0.9127639995941436 1.093327481486024 1.0353593888359283 1.0061917010934127 1.0287225207372825 0.8403669218094526 1.0 15.747673356068297 1.2700295337620653 24.99789113672783 0.920183380589301 1.022418572478602 0.24910867845905527 0.06938462292010236 213.96127527959868 169964.07047904516 0.04348414135350962 0.015876644130297914 18.622137703427644 -1.2700295337620653 0.10223519188930086 ILSQS(ph)TDSLNMR ddPTM_BT-474_Trastuzumab_2h_R1 8 ILSQSTDSLNMR 12 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GZ14;V9GYF5;V9GYG5 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 ILSQS(0.921)T(0.079)DSLNMR;ILSQS(0.658)T(0.342)DSLNMR;ILSQS(0.895)T(0.105)DSLNMR;ILSQS(0.947)T(0.053)DSLNMR;ILSQS(0.991)T(0.009)DSLNMR;ILSQS(0.881)T(0.119)DSLNMR;ILS(0.008)QS(0.779)T(0.201)DS(0.012)LNMR;ILS(0.004)QS(0.865)T(0.13)DS(0.001)LNMR 365.27 2.377599999999999e-86 2734650000.0 2646850.0 2728700.0 2572660.0 2725290.0 2413730.0 2700160.0 2667180.0 2620790.0 3559620.0 3042460.0 True False 2632599.6536926804 2819523.1299660197 2934868.166038416 3070311.434569722 2721104.208201425 2513504.294692951 2538158.313782949 2816366.657901963 2682399.347464268 2848287.598018943 0.9242745204254378 0.9899011363624483 1.0303974107388916 1.0779499362020895 0.9553474200056283 0.8824615521414191 0.8911172858907588 0.9887929364509463 0.9417586023721571 1.0 21.441663395153583 3.019096195726848 24.990056511306005 0.9379429099102732 1.007572827040103 0.2789867146716397 0.04944389033500961 309.2298532437366 404667.8086582888 0.01498655643932177 0.017909943836632965 1044.9516491742165 -3.019096195726848 0.0696299171298298 ILTEAEIDAHLVALAER ddPTM_BT-474_Trastuzumab_2h_R1 4 ILTEAEIDAHLVALAER 17 0 G3V5Z7;P60900;P60900-2;P60900-3;H0YJC4 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 ;;; 248.54 6.9822e-21 443738000.0 473360.0 538450.0 478843.0 475231.0 492690.0 499320.0 479527.0 466866.0 524110.0 498463.0 False True 470811.4823552404 556371.9827501014 546259.9322220323 535395.1958734681 555431.1510975795 464803.1836728505 456330.4470389686 501705.9116175124 394950.11321419035 466650.664584355 1.008916343823471 1.1922665603522948 1.1705971376009614 1.1473147613543928 1.1902504233917701 0.9960409765768788 0.9778844897722826 1.0751209624106741 0.8463506926877984 1.0 18.83198342465765 2.7270752600983936 24.437043042019667 0.9911566800622312 1.1465674486579813 0.5579713450375625 0.07198570016888972 421.97415869429847 897819.982210919 0.022560327318028976 0.02144351266634331 533.4273265832717 -2.7270752600983936 0.1554107685957501 ILTEAEIDAHLVALAERD ddPTM_BT-474_Trastuzumab_2h_R1 14 ILTEAEIDAHLVALAERD 18 1 G3V5Z7;P60900;P60900-2;P60900-3;H0YJC4 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 ;;;;;;;;;;;;; 264.22 9.5972e-31 3090252100.0 1600393.5 2072164.1 1922179.1 2054135.4 1894674.2 1992397.1 2009546.8 1780277.5 2239839.2 1967581.4 False True 1591777.159216434 2141134.8294188473 2192805.2093997565 2314188.7310247505 2135949.728756184 1854667.3780752888 1912337.3440697356 1913130.847115972 1687860.8414675968 1842008.6705208118 0.864152913442244 1.162391287123236 1.1904423928578796 1.2563397599917019 1.1595763705891042 1.0068722301675692 1.038180424812571 1.0386112061975534 0.9163153618546046 1.0 20.81284842168064 2.733299645617893 23.60088791698305 1.0085408942074452 1.1393267578899622 0.27340473028707835 0.10165211431213839 275.54499075507533 1236099.0884691565 0.03312350956503431 0.032139414301313785 541.1275502867514 -2.733299645617893 0.130785863682517 ILTTEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILTTEGR 7 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 100.07 0.023419 190420000.0 175300.0 231250.0 193480.0 227300.0 208030.0 194970.0 200610.0 201170.0 247830.0 204990.0 False True 174356.2042776611 238947.016456423 220720.30224169258 256076.15669440618 234521.3874095869 181492.18281001304 190905.7278953791 216182.32692056152 186755.6172518609 191907.36269923128 0.9085435901222956 1.2451164618989377 1.150139833809392 1.3343737993822784 1.2220551838708913 0.945728085974786 0.9947806337924512 1.1264931364794764 0.9731550401458828 1.0 17.55005053732968 2.747434229853833 24.954100812067356 1.0238263593899346 1.1839064873873977 0.3423793303802978 0.11199377583811745 766.786875626751 2156334.2597876913 0.034584275066545156 0.03617946723591988 559.0288610697638 -2.747434229853833 0.16008012799746307 ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR 36 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 209.36 8.370200000000001e-31 48005000.0 18787.0 24094.0 29629.0 25265.0 12675.0 15703.0 22778.0 16993.0 32162.0 19664.0 False True 18685.85287943192 24895.95422486944 33800.50566011527 28463.546409521197 14289.086119389101 14617.488570885938 21676.141119589964 18261.10394870558 24236.106048720274 18409.02668480261 1.0150375247626666 1.3523775401674032 1.8360832562657394 1.5461733472861439 0.7761999786325104 0.7940391863820405 1.1774735020338956 0.9919646628455838 1.3165338104880988 1.0 14.168125730619185 3.250327145126247 24.999981143130526 1.0094906505851422 1.4598197808525222 0.4292041749734057 0.2412760572953668 215.56013945924755 457991.2756194338 0.07022118136552123 0.09432264087520612 1779.6194560989113 -3.250327145126247 0.45032913026738 ILVATNLFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILVATNLFGR 10 0 O00148;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 100.57 0.0091296 71170000.0 111520.0 196220.0 149610.0 146870.0 140200.0 122770.0 127660.0 119040.0 301530.0 123180.0 False True 110919.58871103686 202751.06408250533 170673.78756656797 165463.72694107983 158053.63896949534 114283.19886949414 121484.5980914415 127923.36927287185 227221.97179499484 115318.54694029636 0.9618538531227161 1.7581826120951318 1.4800202750987712 1.434840546740023 1.3705829908811125 0.9910218425546218 1.0534697263774704 1.1093043804922493 1.9703853180931425 1.0 16.815265037963645 2.980856596623264 21.759513819827205 1.2043806235192998 1.4342700586977675 0.06677243820070111 0.32187886121469567 334.27477163785454 379957.8799734584 0.09553418751964249 0.1031539585791701 956.8780594459627 -2.980856596623264 0.22988943517846772 ILVDVEKVDWDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ILVDVEKVDWDK 12 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 146.5 6.089e-05 612750000.0 714190.0 689540.0 630220.0 671190.0 643050.0 799460.0 852030.0 690910.0 1310440.0 794640.0 False True 710344.8803939684 712490.922064268 718949.4980295604 756162.5851813392 724938.6058440367 744195.2119264138 810814.0538293204 742469.2125698922 987499.6209963624 743925.3948744682 0.9548603734838677 0.9577451273652186 0.9664268796078372 1.016449485917786 0.9744775629905262 1.0003626936972505 1.0899131276008385 0.9980425694369235 1.3274175445549825 1.0 19.50479842125204 1.9038798224837037 1.2482074374952616 1.130666049616184 0.9752678711714636 0.3423792888940018 0.08620413575172382 0.5064162527941941 1.459943328642396 0.06262399146581141 0.027181874224371676 80.14562545604673 -1.9038798224837037 -0.15539817844472037 ILVEDELS(ph)SPVVVFR ddPTM_BT-474_Trastuzumab_2h_R1 3 ILVEDELSSPVVVFR 15 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;Q6P474;Q6XYB5;Q6P996-4 H3BND4;Q6P996-4 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 1 ILVEDELS(0.719)S(0.281)PVVVFR;ILVEDELS(0.5)S(0.5)PVVVFR;ILVEDELS(0.667)S(0.333)PVVVFR 116.51 0.0012738 25369800.0 67485.0 92054.0 73499.0 77135.0 79469.0 69680.0 65007.0 64645.0 92226.0 69691.0 True False 67121.6682582884 95117.96174218187 83847.02033523958 86900.28309117032 89588.90610033396 64863.18560907672 61862.36305914418 69469.13816065872 69498.13806508538 65243.2607145331 1.028790828710633 1.457897117655772 1.2851445408607918 1.331942673303774 1.3731518798902982 0.9941744924871341 0.9481801243781826 1.0647710951268305 1.0652155840151702 1.0 15.993541266123028 2.7331381576963567 24.972390750760816 1.0167345338634686 1.305875861032522 0.6297169320547962 0.10754931471166963 270.875257266092 1247475.287039535 0.032623337146537076 0.03157225778056242 540.9263749959614 -2.7331381576963567 0.2891413271690535 ILVEDELSS(ph)PVVVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILVEDELSSPVVVFR 15 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;Q6P474;Q6XYB5;Q6P996-4 H3BND4;Q6P996-4 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 1 ILVEDELS(0.27)S(0.73)PVVVFR 127.71 8.0225e-05 18056000.0 31408.0 40820.0 34344.0 38198.0 38249.0 30168.0 28248.0 28946.0 36115.0 26064.0 True False 31238.90281775685 42178.66902378894 39179.33667660058 43033.86288347083 43119.78343041527 28082.55716783334 26881.53632216076 31106.097504809746 27214.942166206496 24400.573205486944 1.2802528266316373 1.7285933682207206 1.6056727990222108 1.7636414735451307 1.7671627247149648 1.1508974371765344 1.1016764276716222 1.274810113797447 1.1153402806163049 1.0 14.57462741877204 2.72941284769522 24.62103688489447 1.1537617821883996 1.6407709568753615 0.7455047245821924 0.14576787536017427 270.3389215551921 727610.3420733203 0.046164495561478176 0.04409667855018066 536.3062370661311 -2.72941284769522 0.4870091746869618 ILVEDELSSPVVVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ILVEDELSSPVVVFR 15 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;Q6P474;Q6XYB5;Q6P996-4 H3BND4;Q6P996-4 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 0 86.31299999999997 0.015307 0.0 9784.2 14306.0 12059.0 12645.0 10539.0 13323.0 8796.7 12274.0 16840.0 13368.0 False True 9731.522954326812 14782.166561840379 13756.802381293 14245.855703478937 11881.079180453004 12402.012368968564 8371.170014342664 13189.948206109115 12690.00764443908 12514.842795079396 0.7775984975339096 1.1811707748859979 1.099238928251014 1.1383167920479307 0.9493590430975628 0.9909842714001015 0.6688993342876072 1.0539443780544457 1.0139965680934127 1.0 13.61135254830771 3.1332233360191615 7.953793784183919 0.9381901214214801 1.061839935942669 0.10867592785515368 0.14162894817731667 0.4673800839642437 31.84504036927054 0.040487506723473767 0.04850544625963066 1359.0121391690338 -3.1332233360191615 0.12364981452118884 ILVLDDTNHER ddPTM_BT-474_Trastuzumab_2h_R1 1 ILVLDDTNHER 11 0 K7EN66;C9K0L8;K7ERZ0;K7ERC4;P09543-2;P09543 K7EN66 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase 0 158.04 3.0302e-05 165470000.0 129670.0 183660.0 193260.0 199720.0 221320.0 226560.0 200130.0 189130.0 228160.0 212800.0 False True 128971.87112769145 189773.01207518548 220469.32815396652 225004.5315222473 249503.7901335858 210898.44046487391 190448.94732915738 203243.84098268056 171933.0251873646 199218.921812754 0.6473876575283958 0.9525852782877384 1.1066686143457085 1.1294335371101405 1.252410101727659 1.0586265528687957 0.9559782052638578 1.0202034984092 0.8630356174147181 1.0 17.603995155522437 4.69556310764312 2.908813387343129 1.0523715335765296 0.5975191929118872 0.5942658081009788 0.09928388285665196 0.25479644994119666 3.2478238119237273 0.02635410235628978 0.257957376991707 49609.3009790273 -4.69556310764312 -0.4548523406646424 ILVNQLS(ph)VDDVNVLTCATGTLSNLTCNNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ILVNQLSVDDVNVLTCATGTLSNLTCNNSK 30 0 P14923 P14923 JUP Junction plakoglobin 1 ILVNQLS(1)VDDVNVLTCATGTLSNLTCNNSK 162.49 2.4768e-12 40320000.0 20790.0 23465.0 23282.0 20849.0 19339.0 27311.0 29699.0 25665.0 27552.0 27843.0 True False 20678.06894998614 24246.01834010795 26559.903229228246 23488.481262303863 21801.707018766545 25423.054853178754 28262.345908802472 27580.252624229306 20762.178777885114 26066.03590240842 0.7932954986866856 0.9301766647941926 1.018946775361964 0.9011144368190486 0.8364028615778948 0.975332610925689 1.0842594560452945 1.0580915612749915 0.7965222965094878 1.0 14.669883575434667 2.493476627384145 23.81817497703533 1.0039731602618904 0.9050890876236456 0.1698421639604798 0.09124182106572291 629.669537984726 916983.1325210467 0.03060647464137139 0.02811008888448366 311.51332429758804 -2.493476627384145 -0.09888407263824484 ILVTLLHTLER ddPTM_BT-474_Trastuzumab_2h_R1 2 ILVTLLHTLER 11 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 ; 233.13 1.8228e-15 1851590000.0 353010.0 451220.0 407630.0 420780.0 342820.0 432230.0 489810.0 374570.0 562730.0 464190.0 False True 351109.4333830979 466238.5849317502 465020.76081652456 474050.704856455 386476.0949466646 402350.95745997765 466116.0190440937 402522.3154279207 424052.73169567675 434564.9967869464 0.807956084772368 1.0728857325808328 1.070083334494862 1.0908626059656323 0.8893401396894876 0.9258706072390772 1.0726036898747642 0.926264927925764 0.9758096828575831 1.0 18.72921244786162 3.240799085317357 24.9999942566623 0.9645502613775712 1.0191665778590355 0.05708305086862542 0.08769602089454845 163.8403439273639 1829801.7475907884 0.02451908751093726 0.03164051195486953 1741.0012595657229 -3.240799085317357 0.054616316481464366 IMAT(ph)PEQVGK ddPTM_BT-474_Trastuzumab_2h_R1 3 IMATPEQVGK 10 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK 171.32 4.535e-05 724830000.0 1438590.0 1435520.0 1317560.0 1276180.0 1229800.0 1587220.0 1569860.0 1409270.0 1804470.0 1526010.0 True False 1430844.7912823744 1483300.4154098355 1503060.9955631804 1437744.257150317 1386407.7404043158 1477499.2173139881 1493919.8743524244 1514436.8835280607 1359782.5471592024 1428618.73531711 1.0015581875767365 1.0382759085688371 1.052107856635064 1.0063876537578667 0.9704532819923961 1.0342152043708346 1.0457092836744994 1.060070714522655 0.95181626388049 1.0 20.446189515808108 IMDPNIVGSEHYDVAR ddPTM_BT-474_Trastuzumab_2h_R1 10 IMDPNIVGSEHYDVAR 16 0 P06576;H0YH81 P06576 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta 0 ;;;;;;;;; 227.0 5.4326e-15 12128090000.0 4614843.0 6423007.0 6775780.0 6268226.0 7891729.0 11687060.0 6067000.0 5008311.0 7300524.0 7147148.0 False True 4589997.198045258 6636792.905205271 7729750.92786446 7061782.768904312 8896693.910207527 10879161.050580025 5773516.031809304 5382056.598507957 5501407.682209673 6691010.895658739 0.6859945783414192 0.9918968910230522 1.1552441101059447 1.0554134313973598 1.3296486956821247 1.6259368308066335 0.8628764953222952 0.8043712201993187 0.8222087466303628 1.0 22.673792762848255 2.052133004378135 24.999980954976262 0.848741494670072 1.1480593542443207 0.24214829278510974 0.23095862766152409 136.38772659001745 65402.97443839346 0.09181507946978822 0.06780991905083326 112.75427176568661 -2.052133004378135 0.2993178595742487 IMDYSLLLGIHDIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IMDYSLLLGIHDIIR 15 0 Q8TBX8;Q8TBX8-3;Q8TBX8-2;H0YIJ6 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 140.1 4.998e-06 7218400.0 11557.0 18120.0 19212.0 16087.0 16278.0 12709.0 15220.0 13436.0 23114.0 14700.0 False True 11494.778396103407 18723.113246228702 21916.882606302428 18123.612550562724 18350.90681273498 11830.456743768023 14483.750453953786 14438.662546625557 17417.864411731873 13761.833414696823 0.835265044251129 1.3605100920807198 1.5925845013424227 1.3169475319478712 1.3334638096358076 0.8596570229613298 1.0524579114935368 1.0491816105843805 1.2656645293446602 1.0 13.748385064857612 2.765507313265439 24.2321496007136 1.0490291037935102 1.3103531064198515 0.26813597835339353 0.19840990454958862 662.8573306967726 596081.1434201883 0.06134629969549272 0.06504884337318129 582.7835884490128 -2.765507313265439 0.26132400262634126 IMDYSLLVGIHDVDR ddPTM_BT-474_Trastuzumab_2h_R1 6 IMDYSLLVGIHDVDR 15 0 P78356 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ;;;;; 232.17 9.5609e-14 3462126000.0 2143121.0 2670879.0 2495712.0 2511322.0 2454029.0 2489280.0 2562495.0 2119453.0 2772145.0 2373200.0 False True 2131582.674659129 2759777.5929345507 2847086.5564824212 2829255.107708351 2766535.0469805365 2317201.9327348247 2438537.3271684805 2277617.3452242604 2088987.00958988 2221740.3442012575 0.9594202491855361 1.242169275152954 1.2814668302321275 1.2734409379082967 1.245210789011053 1.0429670320308682 1.0975798020381018 1.0251501041374353 0.9402480425051183 1.0 21.08325878748124 2.7027654410294297 7.204839846697289 1.0287176299181398 1.211222696085992 0.4744635562819678 0.09376568801572825 0.21312216033274045 35.70479818197382 0.030890875345078214 0.02942272387369035 504.3888076309627 -2.7027654410294297 0.18250506616785223 IMEHAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IMEHAGK 7 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 105.39 0.007937300000000001 414150000.0 1181550.0 1219350.0 1129610.0 1121850.0 1063520.0 1218640.0 1279620.0 1206550.0 1677650.0 1323160.0 False True 1175188.6660825447 1259935.3276373607 1288649.2692538667 1263876.0949741271 1198952.968023094 1134398.2851699959 1217719.8919768964 1296588.887736758 1264215.6368582677 1238714.7959857318 0.9487160966276867 1.0171310875759276 1.0403115175744702 1.0203124230613334 0.9679007402741191 0.9157864981077231 0.9830510589872076 1.0467210789267853 1.0205865312622209 1.0 20.240412626228572 1.754501314271382 24.999981428055243 1.026353862684505 0.9861949890859977 0.1847242286630919 0.03591495374643612 10.016144451992982 15727.260314821111 0.0183167802358929 0.010157660704372162 56.820011105680514 -1.754501314271382 -0.04015887359850734 IMEIVDAITTTAQSHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IMEIVDAITTTAQSHQR 17 0 A0A2R8Y891;P08237;P08237-3;P08237-2;F8VZI0 A0A2R8Y891 PFKM ATP-dependent 6-phosphofructokinase, muscle type 0 172.91 1.5425e-09 543650000.0 68282.0 76745.0 71743.0 75579.0 84164.0 82622.0 74904.0 66199.0 82900.0 76503.0 False True 67914.37729884336 79299.41093166782 81843.79079866526 85147.2936507105 94881.78652088878 76910.53561126774 71280.60735893257 71139.10553171075 62470.40580308788 71620.51304248646 0.9482531528160856 1.1072164602426977 1.142742313924981 1.1888674073054983 1.3247850719053542 1.0738618357235608 0.995254073601061 0.9932783571308665 0.8722418082376681 1.0 16.128085232768065 2.3153273423873397 3.3381861817317913 0.9657938902128081 1.1469073996737331 0.4431655419600472 0.0931284676527838 0.23618819846526734 5.287651265401006 0.037262761775115984 0.029370978588391425 206.69374892737824 -2.3153273423873397 0.18111350946092497 IMEVIDAITTTAQSHQR ddPTM_BT-474_Trastuzumab_2h_R1 2 IMEVIDAITTTAQSHQR 17 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ; 152.37 2.1504000000000005e-07 1094480000.0 550460.0 1065490.0 994500.0 1050610.0 940950.0 833330.0 843900.0 597020.0 559810.0 854730.0 False True 547496.3845218554 1100954.1905476938 1134516.9556510395 1183617.1182785293 1060774.4050523993 775723.8585478178 803077.332988936 641572.6640061327 421852.326569682 800180.3996288304 0.6842161902188753 1.3758824773243379 1.4178264753514254 1.4791878416761506 1.3256690685555998 0.9694362157678982 1.0036203503128163 0.8017850278558822 0.5271965256401698 1.0 19.60996576482414 2.2954904380257704 1.5400744548616947 0.7707653423993264 1.2794947875359777 0.41271901180198645 0.24000664062672233 0.36578394490474325 1.7324708007252065 0.13023480880912536 0.08296323840476834 197.46514025187147 -2.2954904380257704 0.5087294451366513 IMGNLGAADIDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 IMGNLGAADIDHK 13 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 240.11 7.7857e-17 922960000.0 899090.0 907280.0 787690.0 724850.0 745550.0 974900.0 918820.0 871320.0 1111260.0 886490.0 False True 894249.3993382899 937478.2663376591 898589.9052757841 816615.9356794544 840491.3732789377 907507.4576677507 874373.1663667435 936342.3228733103 837404.863121102 829913.449237727 1.077521276658012 1.1296096806223952 1.0827513472653518 0.9839772285043864 1.0127458159051723 1.0934965067758493 1.0535715105832453 1.1282409313083646 1.0090267411502438 1.0 19.662601361659775 3.992941857344007 24.830308265082206 1.0506109531815242 1.1042192499971282 0.24281969367620604 0.04404127838345514 493.24138152001865 1735234.538717092 0.011782244120998351 0.023986376940659013 9838.793767339961 -3.992941857344007 0.05360829681560397 IMGPNYT(ph)PGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IMGPNYTPGKK 11 1 P13639 P13639 EEF2 Elongation factor 2 1 IMGPNYT(1)PGKK;IMGPNYT(1)PGKK 92.063 0.0060213 912710000.0 834560.0 555950.0 472620.0 512380.0 470380.0 709790.0 691060.0 665070.0 1097890.0 736390.0 True False 830066.8216883332 574454.4596711285 539160.7879133172 577247.2554644953 530280.1048393095 660723.887965938 657630.7876944346 714700.900557031 827329.7204722814 689392.9597448026 1.2040546831165855 0.8332757849511233 0.7820804960249408 0.8373268791114127 0.7691986077658916 0.9584140345885208 0.9539273333134624 1.03671047180638 1.200084376809621 1.0 19.394967040050723 1.862086794764939 1.6834367762755176 1.0990811597895727 0.8789765256969503 0.29682768327010733 0.1254564877537104 0.41864686469321044 2.2374954410042056 0.08628722200849534 0.037972141911781644 72.79252675629479 -1.862086794764939 -0.22010463409262238 IMGPNYTPGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 IMGPNYTPGKK 11 1 P13639 P13639 EEF2 Elongation factor 2 0 109.72 0.0030316 765170000.0 1037800.0 1101100.0 984380.0 1025100.0 978690.0 1173000.0 1148100.0 1069300.0 1508800.0 1240000.0 False True 1032212.6001104201 1137749.4478709947 1122972.147615655 1154877.5548941288 1103320.3703498964 1091913.2709449907 1092562.0168320867 1149096.5957953802 1136976.456884185 1160862.1383825885 0.8891775913620426 0.9800900643173733 0.96736047329468 0.9948447078334401 0.9504318677212918 0.9406054645440817 0.9411643128910524 0.989864823566732 0.9794241876716877 1.0 20.146765220182846 IMHFPTWVDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IMHFPTWVDLK 11 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ; 192.1 1.5422999999999996e-06 744110000.0 1138590.0 1131570.0 1015180.0 971530.0 918490.0 1200150.0 1125960.0 1031710.0 1528040.0 1176720.0 False True 1132459.9579492412 1169233.6234014898 1158108.5198972558 1094525.598386784 1035454.2571832512 1117186.4553492167 1071493.0132150997 1108701.4391172272 1151475.0166869755 1101620.7221593233 1.0279944223720383 1.0613758436838736 1.0512769927087147 0.9935593769889951 0.9399371638122629 1.0141298478476173 0.9726514685697185 1.0064275451754618 1.0452554073510265 1.0 20.071196172140727 3.736953377506009 24.54993156076477 0.9940382870814125 1.0483317646363606 0.42904261672385735 0.026819557882001105 97.7935076018321 1493781.1605835434 0.007102834079577127 0.011679736861396594 5456.992758963372 -3.736953377506009 0.054293477554948066 IMHFPTWVDLKGEDSVPDTVHHVVVPVNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IMHFPTWVDLKGEDSVPDTVHHVVVPVNPK 30 1 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 44.164 0.042226 113720000.0 107270.0 115410.0 101980.0 107810.0 107580.0 146690.0 160560.0 58537.0 195740.0 140210.0 False True 106692.47023881749 119251.3520831817 116337.89757394965 121458.73494599159 121279.67532338317 136549.6655711176 152793.09940123666 62905.32818486308 147502.49978162127 131261.67776017977 0.812822691736036 0.9085008977339037 0.8863051239258388 0.9253175566436188 0.9239534142247205 1.0402858465712985 1.1640343320949749 0.4792360516661503 1.1237285877993586 1.0 17.002086253004197 5.600750662827414 1.3045248205243691 0.9165018205177679 0.18016762119725283 0.029941529423219926 0.1785350819561355 56.89344512849737 15.390920468485964 0.050438224247771855 95.47612645158314 398795.8799120446 -5.600750662827414 -0.736334199320515 IMIMTDQDQDGSHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 IMIMTDQDQDGSHIK 15 0 Q02880;Q02880-2;E9PCY5;P11388;P11388-2;P11388-3;P11388-4 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2;DNA topoisomerase 2-alpha 0 ; 234.67 1.1656e-17 1370330000.0 292700.0 437630.0 416410.0 383670.0 404480.0 453360.0 505670.0 411350.0 555510.0 460760.0 False True 291124.13572202745 452196.2499970783 475036.90849939594 432242.58266142884 455988.1304592116 422020.29029464757 481208.81025300967 442047.02579297597 418612.0039526336 431353.9023235179 0.6749078521229713 1.048318440058828 1.1012695282008034 1.0020602116571196 1.0571090883912253 0.9783620549655534 1.115577737122453 1.02478967597571 0.9704606859883517 1.0 18.718512482083224 4.739618264861855 24.9926625150064 1.0372936507636832 0.6749077367743829 0.8430797376838044 0.04632887866603122 30.805904187965638 727860.5953465014 0.010482381061770124 0.0648372165544544 54905.80519439452 -4.739618264861855 -0.3623859139893003 IMKDILEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IMKDILEK 8 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 108.67 0.0034351 5765700000.0 8059600.0 9473900.0 9410400.0 9400600.0 9467300.0 10677000.0 12936100.0 10949100.0 18168900.0 12142500.0 False True 8016208.009105748 9789233.034406515 10735302.523336908 10590714.99613477 10672904.537916578 9938924.12095455 12310331.422299063 11766177.440403245 13691418.045786768 11367555.254282735 0.7051831136765871 0.8611555268859075 0.9443809405977925 0.9316616246175455 0.9388918108751266 0.8743238012597346 1.0829357013823298 1.0350666592071613 1.204429425634726 1.0 23.438418680819694 6.19804644474129 0.29014217891078414 1.0892564541669056 1.510843138896839e-16 0.6523253212643223 0.07587368068955622 11.784446597418075 0.4173140440993341 0.08418569068947461 5.335486393964796 1577779.993154099 -6.19804644474129 -1.0892564541669054 IMLFTNEDNPHGNDSAK ddPTM_BT-474_Trastuzumab_2h_R1 9 IMLFTNEDNPHGNDSAK 17 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;;;;;;; 319.15 1.9229999999999997e-58 6954550000.0 3987672.0 3935320.0 3675058.0 3555422.0 3404491.0 4350000.0 4318610.0 4091268.0 5616160.0 4513150.0 False True 3966202.8170240084 4066304.7472488214 4192474.222223228 4005538.0606543687 3838032.7488509025 4049294.7387985606 4109702.335607712 4396579.193197952 4232132.620688419 4225116.9030978875 0.9387202550812165 0.9624123640856839 0.9922741354562933 0.9480301143188435 0.9083849836289329 0.9583864379775119 0.9726836984307932 1.0405816676869573 1.0016604789290888 1.0 22.01055982863292 1.9408876542151723 4.5310937358314805 1.01710954514344 0.9523689456445424 0.6105657728273028 0.02231255553433683 0.14663530921408707 5.948538142533353 0.010810672952166414 0.006445305212939515 87.27455723592948 -1.9408876542151723 -0.06474059949889754 IMNVIGEPIDER ddPTM_BT-474_Trastuzumab_2h_R1 4 IMNVIGEPIDER 12 0 P06576;H0YH81;F8W079 P06576 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta 0 ;;; 141.08 0.0001401 702700000.0 584240.0 738570.0 808220.0 736120.0 861380.0 1329310.0 721680.0 560030.0 890260.0 819810.0 False True 581094.516755166 763152.855975006 922010.3508258241 829312.7165239155 971071.6372007417 1237417.9285591533 686769.581314677 601822.2823747178 670867.3518728225 767489.0239253473 0.7571372340716216 0.9943501889731742 1.2013335983753521 1.0805531944709372 1.265258012725921 1.6122939742256372 0.8948265837108288 0.7841444810463587 0.8741067702071489 1.0 19.549786592682885 2.0334124573693115 24.999981995454235 0.8564454194549068 1.1575581488144477 0.27172735772554424 0.20960701284541164 229.6013467629626 171792.16270438363 0.08260873872817406 0.06101030878389612 107.9971904298022 -2.0334124573693115 0.3011127293595409 IMPDSNDS(ph)PPAEREPGEVVDSLVGK ddPTM_BT-474_Trastuzumab_2h_R1 6 IMPDSNDSPPAEREPGEVVDSLVGK 25 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 IMPDS(0.154)NDS(0.846)PPAEREPGEVVDSLVGK;IMPDS(0.172)NDS(0.828)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDS(0.002)NDS(0.998)PPAEREPGEVVDSLVGK;IMPDS(0.293)NDS(0.707)PPAEREPGEVVDSLVGK;IMPDS(0.078)NDS(0.922)PPAEREPGEVVDS(0.001)LVGK 207.99 1.8174e-25 964828000.0 610810.0 626957.0 552235.0 545443.0 580902.0 711395.0 706731.0 662959.0 925364.0 752129.0 True False 607521.4668273706 647824.8847414899 629984.8878873325 614496.0278744698 654876.4264240923 662217.9380937025 672543.7215554011 712432.3670175901 697320.4414423235 704127.4832899673 0.862800389481725 0.9200391976103405 0.8947028809950568 0.8727056427385802 0.9300537785632876 0.9404801741291983 0.955144824645966 1.0117945740291503 0.9903326570696566 1.0 19.425477128952483 2.379649504145542 1.0109053140539859 1.005105838325065 0.8900007411581206 0.8628961565375118 0.01833022776750314 0.17724452628835147 0.3569351168174744 0.012040965144105784 0.0077361240418905115 239.68977302357624 -2.379649504145542 -0.1151050971669445 IMRDPDTGNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IMRDPDTGNSK 11 1 Q5SZ64;Q15427 Q5SZ64 SF3B4 Splicing factor 3B subunit 4 0 62.45399999999999 0.085607 0.0 407460.0 368180.0 325080.0 296660.0 295800.0 403020.0 371980.0 355060.0 511530.0 387810.0 False True 405266.28063306154 380434.6487304897 370848.43835398695 334217.12558276515 333468.3766560394 375160.17600703414 353985.9062984056 381556.3801581475 385470.2856508271 363059.63377915433 1.1162526563875208 1.0478571929643503 1.0214532375680478 0.92055710546457 0.9184947750453717 1.0333293517153725 0.9750076113218684 1.0509468546157477 1.0617271924129823 1.0 18.46984700968658 -0.3496809130085915 7.4715303943664955 1.0000045045155526 1.013012448576933 0.00412297744158685 0.05924087640783112 0.0 0.0 0.06029106474613728 0.01421074024231696 0.4470119023248452 0.3496809130085915 0.013007944061380394 IMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDR 33 2 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82 F8W0W8 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit 0 218.41 3.1396e-36 471820000.0 127440.0 107490.0 102560.0 96770.0 107320.0 139890.0 118950.0 100950.0 160710.0 143650.0 False True 126753.87719991495 111067.73967092276 116999.55653249935 109021.07207794835 120986.56586452374 130219.73356563917 113195.93406687285 108483.40161371308 121105.17390367005 134482.1340150475 0.9425332080596832 0.8258921564889442 0.8700007431426395 0.8106732754980654 0.8996478733077384 0.9683050802203109 0.8417172652406536 0.8066751945025995 0.9005298346181756 1.0 17.03705499755377 IMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDR 33 2 P62136;P62136-2;P62136-3;E9PMD7 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase 0 295.08 7.255399999999998e-90 1134500000.0 824450.0 671230.0 540190.0 645410.0 539250.0 776580.0 751370.0 762290.0 889010.0 775960.0 False True 820011.252805006 693571.4847828969 616244.0565843495 727118.8398246216 607920.2911148387 722896.8524726862 715023.3625878611 819175.9506301868 669925.3976236802 726437.5684672215 1.1288117360659422 0.9547571806429673 0.8483097286455331 1.0009378250616052 0.8368513930213529 0.9951259183882709 0.9842874234830059 1.12766187514041 0.9222064313623239 1.0 19.470479289455273 2.221315362042762 3.0128403171778007 1.0334099308479237 0.949627799923274 0.049201249997412044 0.09086949818621982 0.499293984448317 9.364276586762363 0.03684748711251941 0.026657904813065483 166.46209726944986 -2.221315362042762 -0.0837821309246497 IMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDR 33 2 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 0 ; 263.16 7.443099999999998e-60 3172700000.0 969110.0 909680.0 905450.0 833220.0 842620.0 933990.0 966820.0 932050.0 1264520.0 1036140.0 False True 963892.4194382426 939958.148886828 1032929.4896875148 938705.5665680288 949922.6623999728 869425.4696759698 920051.2229889361 1001604.3038540009 952895.9896998872 970012.6581159151 0.993690557925749 0.9690163741909689 1.0648618665387366 0.9677250690638459 0.979288934481573 0.8963032207895938 0.948494037980885 1.0325682819432966 0.9823541803575284 1.0 19.887644048212767 1.7384088553008452 24.99999966644706 1.006788646752542 0.9744357854458859 0.10576738579584177 0.040903509081883366 0.10850983377255323 8519.893740249183 0.02017657432947324 0.011188803167671773 54.75311793965364 -1.7384088553008452 -0.032352861306656044 IMSS(ph)IGEGIDFSQER ddPTM_BT-474_Trastuzumab_2h_R1 6 IMSSIGEGIDFSQER 15 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 IMSS(1)IGEGIDFSQER;IMS(0.019)S(0.981)IGEGIDFSQER;IMSS(1)IGEGIDFSQER;IMS(0.002)S(0.998)IGEGIDFSQER;IMS(0.001)S(0.999)IGEGIDFSQER;IMS(0.004)S(0.996)IGEGIDFSQER 354.69 1.7310999999999994e-82 761272000.0 823330.0 700018.0 678723.0 727214.0 658048.0 773914.0 622649.0 664505.0 1002342.0 681666.0 True False 818897.2827605617 723317.6759601827 774281.2988339269 819279.2178370695 741846.5122439263 720415.1467775971 592529.089119834 714093.7373880192 755328.244794676 638161.4922763763 1.2832132503631415 1.1334398654798912 1.2132999377195255 1.2838117431915719 1.1624745792756888 1.1288915979681178 0.9284939569233993 1.118985940127453 1.1836004740749178 1.0 19.28356203106718 2.7445820013278572 2.7554473497365453 1.0665347932579956 1.219135938421619 0.4845507845215652 0.07658271549527168 0.25199717467627636 3.829351622664841 0.026083867853550102 0.026126547749041648 555.3694693262763 -2.7445820013278572 0.15260114516362333 IMTYLFDFPHGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IMTYLFDFPHGPK 13 0 P49902-2;P49902 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 0 110.07 0.0010877 53463000.0 67158.0 63359.0 54919.0 57522.0 47833.0 62806.0 60265.0 50476.0 82457.0 61960.0 False True 66796.42878995533 65467.86601367568 62651.117835494624 64804.27930213646 53924.2490215968 58464.36904942129 57349.75171534328 54242.77543193453 62136.57721719203 58005.65975337518 1.1515501948250602 1.128646175080636 1.0800862898874128 1.1172061412225502 0.9296377155413547 1.007908009287308 0.9886923441467497 0.9351290143506782 1.071215765519786 1.0 15.823906053923453 3.2532101785071093 24.974844338704436 0.983023532072546 1.117228541251126 0.7110494637469782 0.0406807887845544 120.94542393506903 206188.72570112618 0.01104594298790581 0.014892638469684088 1791.4726344409103 -3.2532101785071093 0.13420500917858003 IMYTVFEHTFHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IMYTVFEHTFHVR 13 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ; 210.15 1.8626e-08 1568340000.0 347610.0 450690.0 454110.0 454500.0 367120.0 434590.0 390860.0 189702.0 607080.0 373260.0 False True 345738.5063831016 465690.9442021413 518044.7408051214 512039.6533990647 413870.5559092799 404547.8162148199 371952.6085698017 203858.52652723753 457473.2684552296 349438.22723603644 0.9894123751651367 1.3326846003244492 1.4825073515932061 1.4653223760009382 1.184388322888672 1.1577091018767056 1.0644302185019883 0.5833893107222536 1.3091677807368747 1.0 18.41467791677028 2.403137182933664 1.9207248326212658 0.9095952613603964 1.315472431986132 0.2936657481552839 0.21362997160240996 0.3397038096058293 2.5580304623424612 0.09564063670466609 0.0723154640411058 253.00970656035096 -2.403137182933664 0.4058771706257356 INAGMLAQFIDKPVCFVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 INAGMLAQFIDKPVCFVGR 19 1 P35244 P35244 RPA3 Replication protein A 14 kDa subunit 0 ; 167.92 1.5551e-11 813940000.0 505660.0 581270.0 559880.0 571400.0 542110.0 597680.0 615360.0 557880.0 735520.0 633480.0 False True 502937.582744107 600617.2205648648 638706.2374358005 643739.1814130388 611144.4951622904 556363.7883873845 585592.6858965186 599511.8384572391 554260.9514630539 593050.7640504863 0.848051487715969 1.0127585309269316 1.0769840899849639 1.0854706214630852 1.03050958233023 0.9381385576294804 0.9874242162626525 1.0108946397145233 0.9345927618025458 1.0 19.17779607652567 1.26866037154349 24.974579349965353 0.9672962711982224 1.0035010967252023 0.03111741732695017 0.0661988986952567 647.1681245724251 536973.5915291554 0.04544940771440161 0.016596204212812497 18.5635217642794 -1.26866037154349 0.0362048255269799 INDRFEFPEQLPLDEFLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 INDRFEFPEQLPLDEFLQK 19 1 Q93009;A0A669KBL1;Q93009-3;H3BND8;F5H2X1 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ; 246.31 1.0959e-24 589760000.0 550850.0 552940.0 479170.0 487320.0 490640.0 570290.0 609180.0 539990.0 795930.0 628740.0 False True 547884.284805189 571344.2736407114 546632.970979697 549014.6620339543 553120.0957488813 530867.1946182601 579711.6361064113 580286.7958136604 599783.7164155819 588613.2749086043 0.9308051791564853 0.9706615497746389 0.9286793116661771 0.9327255864543683 0.9397003420195813 0.9018947027667519 0.9848769316261595 0.9858540752479005 1.0189775562039642 1.0 19.166960553971062 2.0940489181174127 6.606856780960224 0.9964572233397397 0.9358038353755749 0.7578578278992535 0.017633645166755488 0.11067107233465051 6.5470033041214375 0.00677436544879377 0.004979989624317378 124.17921728608135 -2.0940489181174127 -0.06065338796416486 INEGLEHLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 INEGLEHLAK 10 0 Q99747;J3QS28;J3QKW4 Q99747 NAPG Gamma-soluble NSF attachment protein 0 ; 127.87 0.00034470000000000003 904020000.0 2254300.0 2086900.0 1982990.0 1797680.0 1696400.0 2399400.0 2284500.0 2035800.0 3073700.0 2232200.0 False True 2242163.099276275 2156361.204942311 2262177.755541937 2025266.1036797191 1912426.4846494405 2233535.125580065 2173990.007362512 2187721.7335829353 2316227.820469855 2089739.0849174333 1.0729392561296063 1.031880592417359 1.082516842350832 0.9691478320413088 0.9151508427306855 1.0688105236201355 1.0403164792452582 1.0468875035035168 1.1083813463542365 1.0 20.994891394695493 -0.4749394292588228 8.02389547155439 0.9999758704505511 1.0348137157201243 0.039502659172626964 0.0539564605493892 0.0 0.0 0.05343871220932999 0.012595625260364533 0.33501215980633525 0.4749394292588228 0.03483784526957312 INEKPQVIADYESGR ddPTM_BT-474_Trastuzumab_2h_R1 4 INEKPQVIADYESGR 15 1 O60869;O60869-2;O60869-3 O60869 EDF1 Endothelial differentiation-related factor 1 0 ;;; 184.22 4.3144e-07 4356830000.0 2330750.0 2312560.0 2120990.0 2064470.0 2077390.0 2484580.0 2472200.0 2427740.0 3220530.0 2600130.0 False True 2318201.500970667 2389532.161627957 2419606.95602443 2325831.690325124 2341933.302844794 2312826.832672215 2352610.241278881 2608910.2866139286 2426873.534391057 2434187.477316713 0.9523512558392171 0.9816549398495875 0.9940101075089108 0.9554858497953358 0.9621006289237779 0.9501432630906976 0.9664868721912262 1.071778698611094 0.9969953247258843 1.0 21.215008855773164 1.7664260772668685 24.999999999999787 1.0297223424087283 0.9665420258167577 0.555871833060035 0.023061599843134526 12.415499749035916 11145.456609772296 0.010285339130103292 0.005704459221220868 58.40177909879587 -1.7664260772668685 -0.06318031659197054 INETDTFGPGDDDEIQFDDIGDDDEDIDDI ddPTM_BT-474_Trastuzumab_2h_R1 1 INETDTFGPGDDDEIQFDDIGDDDEDIDDI 30 0 P47813;O14602;X6RAC9;A6NJH9 P47813 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal 0 63.49100000000001 0.013707 30850000.0 31790.0 30775.0 24782.0 29035.0 27143.0 36624.0 32752.0 27860.0 37936.0 35958.0 False True 31618.846172201032 31799.327271119662 28271.090190994535 32710.8280229744 30599.500160834577 34092.269083622654 31167.66063520989 29939.05467021347 28587.181116356358 33663.12965480736 0.939272328402942 0.9446337163894228 0.8398235838704082 0.9717108408636342 0.9089915428129164 1.0127480550149623 0.9258693696876429 0.8893722888281108 0.8492134097304255 1.0 15.038881689538108 -1.135100277277846 4.172729428541104 1.0000173532822445 0.9204179978477839 0.18785157785557272 0.0497868982130435 33484120852.831905 6940339725.157078 6569848.419065552 0.011537442073235196 0.07326553457114099 1.135100277277846 -0.07959935543446062 INFDDNAEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 INFDDNAEFR 10 0 E9PDQ8;Q96I99;Q96I99-2 E9PDQ8 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial 0 ;; 171.34 9.4252e-06 696060000.0 377603.0 488550.0 456230.0 424260.0 516470.0 809830.0 453240.0 385180.0 580100.0 559110.0 False True 375570.0274036374 504811.091415289 520463.2183777508 477971.27249964257 582239.393142477 753848.3582347676 431315.04965506046 413924.0875044083 437142.12794175197 523427.1211218468 0.7175211452526354 0.9644343425180977 0.9943375063604967 0.9131572538221177 1.1123600013208708 1.4402164653200724 0.8240212099262929 0.7907960264215128 0.8351537593329849 1.0 18.99762915330172 -2.771365991854197 2.0894191243143734 2.804047020491918 0.9559311516045271 0.0048255699452053324 0.19454448566996152 7337378.843585722 1192033.8270543276 63677826.756562814 0.05026183413382853 0.0016929105370604347 2.771365991854197 -1.8481158688873909 INFDKYHPGYFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 INFDKYHPGYFGK 13 1 P46776;E9PLL6 P46776 RPL27A 60S ribosomal protein L27a 0 ; 107.37 0.0007813 1609480000.0 1608970.0 2544910.0 2223480.0 2394710.0 2446630.0 2390750.0 2666720.0 2148790.0 4120130.0 2735850.0 False True 1600307.4842933721 2629615.790919418 2536526.6571653825 2697880.040464854 2758193.8281878503 2225483.0797201525 2537720.56574032 2309143.6211345303 3104779.1684134626 2561245.7107209745 0.6248160719585532 1.0266940730880512 0.9903488160264664 1.0533468261838173 1.0768954406219138 0.8689065131098621 0.9908149597353421 0.9015705176074345 1.212214492118949 1.0 21.288414232503396 4.740773850725182 24.94576475225312 1.0027065119103271 0.6248159372685126 0.6248777945354901 0.08998322961912625 125.92581570599022 1419237.0591935383 0.020797012176938506 0.13815014231601117 55052.09501082525 -4.740773850725182 -0.3778905746418145 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPT(ph)ASPHSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNR 40 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 INGEAQPWLSTSTEGLKIPMTPTSSFVS(0.003)PPPPT(0.602)AS(0.303)PHS(0.092)NR 106.71 1.5297999999999998e-05 438860000.0 250700.0 317530.0 296900.0 331490.0 293410.0 394690.0 409390.0 322270.0 453950.0 416900.0 True False 249350.25905538857 328098.79409906204 338700.9392989376 373456.60001156497 330774.024322679 367406.00930032274 389586.24167832686 346319.4238539013 342080.1051183563 390293.08507395245 0.6388795205227422 0.8406472126886237 0.8678117861984688 0.9568619437385182 0.8475016262714574 0.9413592588521186 0.9981889420472524 0.8873316927669392 0.8764698074359663 1.0 18.574198376829635 5.343808758154663 1.0201862471170673 0.9257453416488818 1.2331046089124e-18 0.7646753490245375 0.04819317029094025 2.5566618001225474 0.8977308473146075 0.013999827035915461 3.474629954622074 220703.26508050394 -5.343808758154663 -0.9257453416488818 INHEGEVNR ddPTM_BT-474_Trastuzumab_2h_R1 5 INHEGEVNR 9 0 Q09028-3;Q09028;Q09028-2;Q09028-4;Q16576;E9PC52;Q16576-2;Q5JP01 Q09028-3;Q16576 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 0 ;;;; 154.05 7.6614e-05 3434946000.0 2419580.0 2858320.0 2669910.0 2460660.0 2628910.0 2369400.0 2932310.0 2228090.0 3147360.0 2953530.0 False True 2406553.250120608 2953457.4533090726 3045810.120726263 2772179.303702846 2963686.105729639 2205608.9549676576 2790462.9627879933 2394361.389811773 2371735.30046329 2765033.18675575 0.8703523927480411 1.0681453906071932 1.101545592767352 1.002584459738612 1.071844678004379 0.7976790172111923 1.009196915304326 0.8659430929366562 0.8577601570294635 1.0 21.39886536554568 2.75792536137032 24.959420218637717 0.9039105828731421 1.0286496128681144 0.3273929251165938 0.08345771025074947 873.8545571060354 1126318.464768393 0.02433971176771455 0.025782553448355658 572.6975976898703 -2.75792536137032 0.12473902999497233 INHLEYEDQYKDDNFGEGNDGGILDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 INHLEYEDQYKDDNFGEGNDGGILDDK 27 1 O60216 O60216 RAD21 Double-strand-break repair protein rad21 homolog 0 145.18 9.7804e-08 143140000.0 92565.0 69511.0 53065.0 56224.0 52993.0 102610.0 80307.0 67036.0 160430.0 98075.0 False True 92066.64032493836 71824.63161471326 60536.09075075152 63341.95263522339 59741.34443588063 95516.81221795878 76422.24360746835 72038.56672191055 120894.17615186241 91815.76953376818 1.0027323279262819 0.78226901521854 0.6593212806269346 0.6898809753146747 0.6506654002819073 1.040309444695439 0.832343332692557 0.7845990627505014 1.3167038381941538 1.0 16.486454340098344 1.2532907602031114 24.99959618369618 1.15835188617274 0.7991943913950251 0.49293376225583796 0.1431390988426816 162.63369564123525 276020.03519454616 0.0962132568274931 0.03481057723785449 17.918050662418782 -1.2532907602031114 -0.35915749477771486 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTR ddPTM_BT-474_Trastuzumab_2h_R1 11 INHTVILDDPFDDPPDLLIPDRSPEPTR 28 1 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 INHTVILDDPFDDPPDLLIPDRS(0.987)PEPT(0.013)R;INHTVILDDPFDDPPDLLIPDRS(0.995)PEPT(0.005)R;INHTVILDDPFDDPPDLLIPDRS(1)PEPTR;INHTVILDDPFDDPPDLLIPDRS(0.998)PEPT(0.002)R;INHTVILDDPFDDPPDLLIPDRS(0.983)PEPT(0.017)R;INHTVILDDPFDDPPDLLIPDRS(0.858)PEPT(0.142)R;INHTVILDDPFDDPPDLLIPDRS(0.993)PEPT(0.007)R;INHTVILDDPFDDPPDLLIPDRS(0.982)PEPT(0.018)R;INHTVILDDPFDDPPDLLIPDRS(0.974)PEPT(0.026)R;INHTVILDDPFDDPPDLLIPDRS(0.988)PEPT(0.012)R;INHTVILDDPFDDPPDLLIPDRS(0.954)PEPT(0.046)R 281.2 5.360199999999998e-62 9137633000.0 816546.6 938222.5 799593.8 797861.7 798260.2 839496.4 817893.6 684734.9 977220.1 867466.0 True False 812150.4038324561 969450.6687450212 912169.6568460988 898870.9094133964 899913.9048111058 781463.9898299623 778328.961911032 735833.2952513696 736397.3004334628 812103.5772049929 1.0000576609053051 1.1937524916237507 1.123218370722491 1.106842691799277 1.1081270050654484 0.9622713306097204 0.9584109512111711 0.9060830612073871 0.9067775602810575 1.0 19.631304217598835 2.6882222963677016 2.98953550769732 0.9341433752718701 1.1144059926635943 0.7083957980338524 0.051070299563658696 0.12970992829264913 2.3140760851609365 0.016730369059540368 0.016172332910906695 487.77809851006066 -2.6882222963677016 0.18026261739172422 INISEGNCPER ddPTM_BT-474_Trastuzumab_2h_R1 5 INISEGNCPER 11 0 F8VZX2;F8W1G6;F8W0G4;P57721;P57721-4;E9PFP8;P57721-5;P57721-3;P57721-2;F8VTZ0;J3QT27;F8VXH9;Q15366;Q15366-6;Q15366-2;Q15366-3;Q15366-5;Q15366-4;Q15366-8;Q15366-7;Q15365 F8VZX2;Q15366;Q15366-2;Q15366-5;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 3;Poly(rC)-binding protein 2;Poly(rC)-binding protein 1 0 ;;;; 250.16 3.3154e-16 3249750000.0 1498810.0 1710620.0 1535380.0 1570390.0 1563130.0 1610420.0 1502650.0 1331820.0 1779950.0 1616130.0 False True 1490740.5734934465 1767556.9526083746 1751548.1582378028 1769201.2129842862 1762185.3401026188 1499095.4559209158 1429961.078819557 1431207.1712449284 1341305.1726080352 1512987.1997614952 0.9852962230800395 1.1682563823983503 1.157675463820126 1.1693431466328204 1.1647060466740278 0.9908183335306675 0.9451243731903176 0.9459479706573469 0.8865277728849763 1.0 20.528968351380655 2.605419562610913 3.773366626343065 0.9428338748168795 1.1348402599159457 0.7031902747312005 0.05739124519273203 0.12709408718676643 3.2083373009297254 0.019201748217699717 0.01787621744503134 403.10627862962434 -2.605419562610913 0.1920063850990662 INLAEDVLAWEHER ddPTM_BT-474_Trastuzumab_2h_R1 2 INLAEDVLAWEHER 14 0 K7EQ66;K7ELZ9;K7ENM2;A0A0C4DGP7;K7EMW4;Q969V3-2;Q969V3 K7EQ66 NCLN Nicalin 0 ; 157.8 5.1977e-06 105745000.0 59871.0 95730.0 94926.0 77325.0 103138.0 109838.0 91456.0 65183.0 96632.0 84696.0 False True 59548.66118829346 98916.3151799929 108290.75568841695 87114.33707168911 116272.01295317979 102245.15759084065 87031.92388415238 70047.28645256725 72818.33840246058 79290.62876810622 0.7510176437426139 1.2475158378335485 1.3657446960740423 1.0986712859405383 1.4664029628675226 1.2894986353288653 1.097631904757451 0.8834245299961979 0.9183725685342395 1.0 16.274862745747402 1.9486050947373519 3.957485053251203 0.928380190555556 1.219088017933438 0.301905581972817 0.18168152054302075 0.26319461633562163 8.098696879628788 0.08512754339940823 0.050082617749330184 88.83929321382602 -1.9486050947373519 0.29070782737788203 INMAHLCVIGSHAVNGVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 INMAHLCVIGSHAVNGVAR 19 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 214.19 2.5180999999999996e-19 2309700000.0 822970.0 927250.0 898130.0 901630.0 877460.0 935610.0 925660.0 709290.0 1066010.0 908510.0 False True 818539.2209605624 958112.9557155377 1024578.8973140965 1015776.2655537934 989199.3298871138 870933.4828890397 880882.2894354056 762220.8215016406 803306.1193021666 850528.1139854571 0.9623893760842317 1.126491811335845 1.204638483392467 1.1942888763476687 1.1630413076551491 1.0239914102403573 1.0356886209295457 0.8961735761208166 0.9444792077924212 1.0 19.69799939902276 2.3231569060221813 1.7987052555086394 0.9430891380580797 1.1359457685933358 0.5336571210291363 0.07128101283035844 0.25799157516339577 1.6950960634459196 0.03559759334429275 0.02448219765617662 210.45386500788064 -2.3231569060221813 0.19285663053525615 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK 36 1 P55735;P55735-4;P55735-3;P55735-2;A8MXL6 P55735 SEC13 Protein SEC13 homolog 0 123.56 1.5182e-08 219640000.0 125360.0 192500.0 181910.0 173380.0 182910.0 238560.0 223400.0 179620.0 213900.0 238930.0 False True 124685.07568880543 198907.2461312929 207521.34680993523 195329.89022294793 206202.50430749185 222068.9087098359 212593.28852912463 193024.15649187905 161187.21111315445 223681.28284173546 0.5574229283056541 0.8892440333151553 0.9277546345116676 0.8732509387526742 0.9218585555653728 0.9927916448286807 0.9504294942708458 0.8629428177432812 0.7206110813804731 1.0 17.77108501433336 4.738063403482436 5.311376075665828 0.9042825409266149 0.5433502611459694 0.6580520820794296 0.07509652206519482 0.09285443484882173 9.393953353896078 0.018028309611990145 0.1224566335080235 54709.58286308445 -4.738063403482436 -0.36093227978064546 INPPPYLTCESFPHAVDHILQHLL ddPTM_BT-474_Trastuzumab_2h_R1 2 INPPPYLTCESFPHAVDHILQHLL 24 0 Q9H0R4;Q9H0R4-2 Q9H0R4 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 0 ; 189.11 8.6517e-18 169028000.0 117118.0 156014.0 148180.0 152445.0 154436.0 169862.0 166857.0 87277.0 165572.0 124624.0 False True 116487.44970103314 161206.83167754533 169042.45599635097 171744.52136946213 174102.5091861123 158119.8397521383 158785.48945436062 93790.05292362608 124768.99915113222 116670.38962402579 0.9984319935539585 1.381728750517074 1.4488891015200678 1.4720489228065028 1.4922596020049597 1.3552696640654476 1.3609750508766805 0.8038890863900228 1.069414438000974 1.0 16.832078932971168 1.752248177704524 24.999995308825817 0.950604049628669 1.372269522056011 0.6168488522670341 0.14441807437009693 2.617991675761645 4788.5737299365255 0.06667221453732666 0.03697325304710946 56.52599004655419 -1.752248177704524 0.4216654724273421 INPPSSGGTSSS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 5 INPPSSGGTSSSPIK 15 0 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6;A0A0A0MT46 A0A0C4DG88 POU2F1 POU domain protein;POU domain, class 2, transcription factor 1 1 INPPSSGGTS(0.001)S(0.089)S(0.908)PIK;INPPSSGGT(0.001)S(0.001)S(0.127)S(0.871)PIK;INPPSSGGT(0.001)S(0.003)S(0.322)S(0.673)PIK;INPPSSGGTSS(0.01)S(0.989)PIK;INPPS(0.003)S(0.002)GGT(0.002)S(0.007)S(0.318)S(0.668)PIK 248.01 2.5937000000000003e-18 4844410000.0 2366050.0 1980830.0 1791870.0 1647590.0 1681460.0 2406700.0 2305790.0 2069380.0 3104060.0 2454040.0 True False 2353311.449692867 2046760.7291129795 2044149.7207867575 1856174.725068793 1895583.9642057607 2240330.493762412 2194250.128726814 2223807.6436987193 2339106.0052730124 2297421.066190653 1.0243274445092845 0.8908949078745532 0.8897584125386976 0.8079384107618159 0.8250920965693167 0.9751501484562851 0.9550927172288419 0.9679582364873184 1.0181442312407611 1.0 21.13158386419145 2.6926843045799838 14.610981358913095 0.9778729554768917 0.8834816795524573 0.41609843402045976 0.056377340358176306 4.47592095524829 1424.5646891976771 0.019113571354311902 0.018024203308510123 492.81543850557597 -2.6926843045799838 -0.09439127592443441 INPSSMFDVHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 INPSSMFDVHVK 12 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 162.72 6.1913e-05 2281600000.0 1597080.0 1772050.0 1646430.0 1712810.0 1687120.0 1952860.0 1924580.0 1819360.0 2519900.0 2051360.0 False True 1588481.4987322697 1831031.6130231558 1878233.0329738997 1929651.5703816335 1901964.7316563095 1817863.3847379675 1831480.7127904345 1955129.881722886 1898904.4099300501 1920440.4485423435 0.8271443667716758 0.9534435782233962 0.9780220128145707 1.0047963590051863 0.990379437748222 0.9465866989615668 0.9536774307063615 1.0180632693957643 0.9887858857437419 1.0 20.873005796965764 4.785123628151919 2.1962973526527727 0.9854129440145867 0.7733443893735235 0.840103166202399 0.020622265880384967 0.2977841241342568 1.4826827297690448 0.005628940041558683 0.1287670767884086 60971.043535742 -4.785123628151919 -0.21206855464106322 INPYMS(ph)SPCHIEMILTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 INPYMS(0.917)S(0.083)PCHIEMILTEK;INPYMS(0.595)S(0.405)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK 253.93 1.0362999999999998e-30 706864000.0 813744.0 785953.0 792868.0 750998.0 710566.0 970663.0 930708.0 878959.0 1242453.0 934025.0 True False 809362.8927194579 812112.9704863786 904496.9226678009 846074.2697984406 801052.3682453523 903563.3515049268 885686.0983901724 944551.3838433648 936267.1061672359 874414.7248409655 0.9256052874300134 0.9287503371287372 1.0344026661173926 0.967589229415505 0.91610118801584 1.033335013507764 1.01289019183804 1.080209832943007 1.0707357499469372 1.0 19.737958170135755 2.6041040571216114 5.503546832240874 1.0468300011805824 0.9584388933263338 0.548239230780786 0.03832113240178011 0.1817212549656104 7.405833488367929 0.013079073233106838 0.012268843779873037 401.8870916127045 -2.6041040571216114 -0.08839110785424864 INPYMSS(ph)PCHIEMILTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 INPYMS(0.258)S(0.742)PCHIEMILTEK;INPYMS(0.155)S(0.845)PCHIEMILTEK 267.57 1.7317e-31 656880000.0 996640.0 1114110.0 1008610.0 916340.0 884190.0 1228000.0 1108730.0 1046630.0 1517070.0 1223390.0 True False 991274.2009771141 1151192.4778562833 1150613.5210047204 1032348.5500455443 996786.3554952785 1143111.2504010662 1055096.4941400918 1124734.8452794517 1143208.4261965088 1145312.2028031251 0.8655056660978495 1.005134211474187 1.0046287101356473 0.9013686814118413 0.8703184625603979 0.9980782948119542 0.9212304658570541 0.9820334075954916 0.9981631413675089 1.0 20.127309488205974 1.5816015901681286 4.531568898519993 0.9966733579301301 0.941545155049568 0.21219913568429016 0.04913602859273317 0.2776526677868676 12.60926206157536 0.028927355699996854 0.012900147079327424 38.15940463219951 -1.5816015901681286 -0.05512820288056208 INPYMSSPCHIEMILTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 ; 205.62 9.4205e-16 1021820000.0 359450.0 500550.0 482260.0 525770.0 461990.0 619190.0 558200.0 558270.0 706360.0 637970.0 False True 357514.7611386493 517210.50416113593 550158.0161209353 592332.4280915869 520821.6880707353 576386.852716478 531197.7334689229 599930.9422376187 532287.0427390726 597254.2084064031 0.5985973076566042 0.8659805102774576 0.9211454827398704 0.9917593208293191 0.8720268199706698 0.965061182665245 0.8893997329650762 1.0044817328928628 0.8912235949903539 1.0 19.187985588753676 4.810131875742047 1.9556499551874018 0.9434700698620871 0.45075498800052455 0.8360173580491957 0.045633326773521346 0.3282368605797522 1.1455532158885446 0.010748090761800133 0.30966564471100516 64585.03150153576 -4.810131875742047 -0.4927150818615626 INRLDLLITYLNTR ddPTM_BT-474_Trastuzumab_2h_R1 2 INRLDLLITYLNTR 14 1 Q14790-3;Q14790-2;Q14790;Q14790-4;Q14790-9;E7EQ01;E7EVN1;E7ETB7;E7EQ06;A0A0A0MS31;Q14790-6;Q14790-5;Q14790-8;Q14790-7 Q14790-3 CASP8 Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10 0 ; 164.65 3.7293e-06 327560000.0 98756.0 108362.0 114558.0 110434.0 106062.0 103690.0 126398.0 104415.0 141475.0 130161.0 False True 98224.30866882308 111968.76366378782 130686.77064401387 124414.93307694675 119568.36702127404 96522.15436000534 120283.64585274969 112206.97750862667 106610.38191787509 121854.01354356133 0.8060818500139848 0.9188762881721605 1.0724863863207503 1.0210162920277543 0.9812427473185346 0.7921130503058879 0.9871127126210721 0.9208311999383921 0.874902506840804 1.0 16.894794244776133 INS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_BT-474_Trastuzumab_2h_R1 3 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 INS(0.354)S(0.354)PNVNT(0.124)T(0.163)AS(0.004)GVEDLNIIQVTIPDDDNER;INS(0.461)S(0.461)PNVNT(0.019)T(0.025)AS(0.033)GVEDLNIIQVTIPDDDNER;INS(0.467)S(0.467)PNVNT(0.026)T(0.034)AS(0.005)GVEDLNIIQVTIPDDDNER 156.84 1.1153e-09 412800000.0 261489.0 279134.0 273523.0 251346.0 264931.0 322561.0 305272.0 292904.0 329133.0 306982.0 True False 260081.17227815927 288424.8064499337 312032.6608954645 283166.3778289141 298668.392480937 300263.11729692045 290504.82710771204 314761.983816375 248022.58230624502 287390.14593948686 0.9049759567362557 1.003600194805095 1.0857458590844182 0.9853030169257713 1.0392436786744417 1.044792667874368 1.010837814769338 1.095242784986273 0.8630170025330962 1.0 18.13265106981606 4.70988886220127 4.106543294062688 1.0242236356819137 0.8978852770825638 0.21193729433324826 0.061505592326724465 0.2646188818641202 9.387115346860439 0.013806531501173879 0.09291212194124784 51273.015738081376 -4.70988886220127 -0.12633835859934983 INSS(ph)PNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_BT-474_Trastuzumab_2h_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 INS(0.186)S(0.775)PNVNT(0.016)T(0.022)AS(0.001)GVEDLNIIQVTIPDDDNER 134.91 1.3499000000000002e-06 179700000.0 120200.0 128590.0 122380.0 108800.0 115110.0 132200.0 136280.0 115620.0 147190.0 130570.0 True False 119552.85655547556 132870.04041570364 139610.0402539711 122574.06884448454 129768.57618957643 123061.3251653264 129687.6157598439 124248.15150646394 110916.99674495186 122236.91081339905 0.9780421949469843 1.086987878960199 1.142126705632254 1.0027582342259955 1.0616153118240599 1.0067443977963895 1.0609529879057458 1.0164536282836463 0.9073936506320286 1.0 16.89932046341309 1.4479089326134855 4.692502883695112 0.9538237019196418 1.049937769007688 0.36927226161214055 0.0487887783103497 0.19214754749397747 8.166297681261398 0.03200343413718931 0.012191196427255009 28.048454271045937 -1.4479089326134855 0.09611406708804626 INSTATPDQDRDK ddPTM_BT-474_Trastuzumab_2h_R1 2 INSTATPDQDRDK 13 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 ; 167.61 2.8834e-05 819140000.0 472010.0 427070.0 381360.0 345650.0 363460.0 531590.0 495930.0 435860.0 650600.0 442860.0 False True 469468.75060524157 441284.7667807329 435052.1731594579 389409.25455970666 409744.47660380043 494842.43452825985 471939.97126342356 468386.0864522342 490268.34759335243 414596.2956484791 1.1323515321595803 1.0643721890725284 1.0493392674408326 0.939249237503734 0.9882974857817053 1.1935524743516246 1.1383120790436683 1.1297401625830288 1.1825198457851946 1.0 18.661347700692524 2.7429100522525043 24.988039786394175 1.136899567305017 1.0318772126255897 0.3211556169930736 0.06783847120020504 418.4146009626076 2403844.0875992575 0.021128970294785946 0.021730607777601205 553.2355154456784 -2.7429100522525043 -0.10502235467942733 INVLHKPPYEHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 INVLHKPPYEHPK 13 1 O15294;O15294-3;O15294-4;O15294-2 O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit 0 120.14 0.00018944 207020000.0 151770.0 136650.0 120430.0 117210.0 122050.0 171690.0 153700.0 125440.0 232340.0 172270.0 False True 150952.88718323203 141198.31264333072 137385.49720367475 132048.77398218802 137592.34405297358 159821.47441478758 146264.9438089815 134800.9697714133 175082.92019649493 161275.58111223276 0.9359934476266615 0.875509557426861 0.8518679409257082 0.8187772325575711 0.8531505086143335 0.990983714413447 0.9069255419839086 0.8358424061582169 1.0856133271326027 1.0 17.29916848964965 1.237921869219742 24.999975992464492 1.0428067058990118 0.8816122430826693 0.6000351391080141 0.05196171887000023 11.41506826460328 446603.41888492706 0.04253270714923369 0.013039881453591242 17.29505188451696 -1.237921869219742 -0.16119446281634253 INYTEGR ddPTM_BT-474_Trastuzumab_2h_R1 6 INYTEGR 7 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;K7EQ48;A0A0J9YX90;K7ERC6;K7EPY4;K7EP41;A0A2R8YF08;K7ELR7;K7ERK8 P06744 GPI Glucose-6-phosphate isomerase 0 ;;;;; 191.63 0.001217 10287930000.0 7812870.0 8741510.0 8134350.0 8225060.0 7843020.0 9256300.0 9259860.0 7751340.0 9485880.0 9440820.0 False True 7770806.376011455 9032465.875995606 9279595.774962315 9266351.752665589 8841782.107778389 8616433.767986458 8811925.195699641 8329784.351306982 7148211.978279801 8838298.784907347 0.8792196965869963 1.02196883085915 1.0499300827902023 1.0484316018473152 1.000394116894644 0.9748973165175457 0.9970159880482042 0.9424646704104725 0.8087769097019429 1.0 23.075337272564145 1.5759263464546234 3.9541473866694434 0.8966967240440614 1.0001550655704852 0.2551646977694876 0.06268625830172916 0.2016260750774401 7.158062607540076 0.03690003488277864 0.015811164153705072 37.663991786428596 -1.5759263464546234 0.10345834152642375 IPDPEAVKPDDWDEDAPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPDPEAVKPDDWDEDAPAK 19 1 P27824;P27824-2;P27824-3;D6RGY2 P27824 CANX Calnexin 0 ; 193.54 4.621e-15 1654620000.0 2306800.0 1900510.0 2069860.0 1297150.0 1920790.0 2999900.0 2234600.0 1962160.0 3328400.0 2205800.0 False True 2294380.4451095713 1963767.3264674428 2361278.2964543593 1461369.0570002135 2165391.2210857123 2792523.9740050132 2126503.8609990226 2108586.342846595 2508160.4182750033 2065023.955519609 1.1110672294996455 0.9509658816395243 1.1434629076059342 0.70767656379681 1.048603438859792 1.352296164187765 1.029772005944572 1.0210953423617912 1.2145914392764954 1.0 20.977727087195955 3.001271751558807 24.999930040859503 1.1175780499699357 0.9743891766664438 0.17907379889655384 0.14638944229356496 75.89843283215868 1491941.4881501498 0.04210980256584319 0.04995145067687294 1002.9326078872651 -3.001271751558807 -0.14318887330349195 IPDWFLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 IPDWFLNR 8 0 P62269;J3JS69 P62269 RPS18 40S ribosomal protein S18 0 ; 125.01 0.0029788 1347230000.0 1402150.0 1867310.0 1968730.0 1477860.0 1096850.0 1416250.0 1711300.0 1118490.0 2241080.0 1596570.0 False True 1394600.9801935097 1929462.2845372693 2245910.071492076 1664956.9244716018 1236527.3459607058 1318347.9709938986 1628517.881199152 1201957.4033771376 1688795.8629334646 1494675.5357076537 0.9330459667510623 1.2908903895478332 1.502607099559404 1.1139253200416694 0.8272881414194501 0.8820295371796041 1.0895460869560099 0.8041594143093211 1.1298745597879238 1.0 20.511400907373133 3.4693707142622725 10.06217747018026 0.9442856934683652 1.2572796856412867 0.38831453933321713 0.16195465273449977 0.15647101927098475 173.1231254646988 0.043864113928260624 0.06075072517916704 2946.93606845401 -3.4693707142622725 0.31299399217292145 IPEDDGNDLTHTFFNPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 IPEDDGNDLTHTFFNPDR 18 0 G5E9B7;A0A0D9SFG6;Q99418-2;Q99418;M0R2J0;Q15438-3;O43739-2;O43739;K7ENQ8;Q15438-2;Q15438 G5E9B7;K7ENQ8 CYTH2;CYTH1;CYTH3 Cytohesin-2;Cytohesin-1;Cytohesin-3 0 ;;; 261.31 8.8371e-31 437624000.0 142808.0 191775.0 198512.0 186097.0 206210.0 213786.0 224350.0 196887.0 220371.0 187105.0 False True 142039.13759546028 198158.1149445643 226460.76410276417 209656.86111904474 232469.6211975719 199007.47701811258 213497.3333997723 211579.70771192803 166063.51987011175 175163.7987113501 0.8108932247440268 1.1312732219920978 1.2928514097593053 1.1969188991187343 1.3271556275201317 1.1361221809653381 1.2188439333380265 1.2078963191508947 0.9480470342149032 1.0 17.418345116863424 -0.611187684757927 8.85845985050994 1.0000016230536322 1.1595095040539034 0.0631314070997332 0.1485733988983393 0.0 0.0 0.1401181573981721 0.033026166421203845 0.24480050830295869 0.611187684757927 0.15950788100027125 IPEYQQLLNDIHQCYLDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IPEYQQLLNDIHQCYLDQR 19 0 Q96JB2;Q96JB2-2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 0 109.65 0.00025117 154450000.0 87914.0 78241.0 86976.0 70517.0 70225.0 81348.0 61256.0 60119.0 96409.0 82041.0 False True 87440.6807921637 80845.20438731674 99221.4647910557 79444.44496972914 79167.73749381467 75724.60423259431 58292.813259355666 64605.385058096304 72650.29376441365 76805.07314116613 1.1384753274233532 1.0526024008690797 1.2918608202961894 1.0343645506815924 1.030761826739049 0.9859323236814588 0.7589708710024231 0.841160387144648 0.9459048835339813 1.0 16.228913986770348 2.9053892180149505 1.4928373095745646 0.8699309271786138 1.1423743908300312 0.5873330139100831 0.0897191574144923 0.24870837436968238 1.1290513857930797 0.03449869715786854 0.038062759913362804 804.2465711901505 -2.9053892180149505 0.2724434636514175 IPGEETDTIQHMR ddPTM_BT-474_Trastuzumab_2h_R1 1 IPGEETDTIQHMR 13 0 P50416;P50416-2 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform 0 190.1 4.7002e-06 394120000.0 200180.0 224610.0 215110.0 184480.0 241190.0 285540.0 250650.0 222970.0 251200.0 246870.0 False True 199102.25312208897 232086.00807038805 245395.61823036184 207835.1490848393 271904.11685486836 265801.2918888602 238525.10192401562 239609.15361871876 189295.12590754722 231114.54524395926 0.8614873326640742 1.0042033824630265 1.061792186083865 0.8992733402627395 1.176490716185139 1.1500846543790069 1.032064432259051 1.0367549708556543 0.8190532781384728 1.0 17.818248533424473 4.725101982031513 3.538501188221106 1.0299973393347353 0.8438560956982762 0.18324703667329822 0.09973702266744204 0.4442824192952034 9.955608887786543 0.024209243607048816 0.21627457327002747 53100.912237817734 -4.725101982031513 -0.186141243636459 IPGGNIYIS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IPGGNIYISPLK 12 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 IPGGNIY(0.008)IS(0.992)PLK 64.104 0.072616 0.0 158340.0 129950.0 108840.0 106240.0 130670.0 148250.0 162520.0 142240.0 182510.0 178500.0 True False 157487.515033228 134275.30719356632 124163.72594576092 119689.97310696724 147310.0499582307 138001.82644296266 154658.28671330927 152854.67108008472 137532.85600870414 167107.97717846156 0.942429665491316 0.8035242210500109 0.7430149538173232 0.716243324393457 0.8815261392393744 0.8258242890199357 0.9254991253238811 0.9147060102154481 0.8230178973552357 1.0 17.35042107893771 2.5388854307164745 1.6731376732677055 0.9101907653335309 0.802902603928058 0.28724208062172163 0.07270306823987417 0.48154516166029665 2.721482017092256 0.03200427735225879 0.026399490797837124 345.84812914363994 -2.5388854307164745 -0.10728816140547293 IPGGNIYIS(ph)PLKSPYK ddPTM_BT-474_Trastuzumab_2h_R1 1 IPGGNIYISPLKSPYK 16 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 IPGGNIYIS(0.999)PLKS(0.001)PYK 103.27 0.00087946 630960000.0 463540.0 399180.0 366430.0 285310.0 349960.0 527830.0 481890.0 504560.0 739650.0 591680.0 True False 461044.3521441354 412466.4649905939 418020.15893334406 321430.2167465063 394525.3316245688 491342.35447817075 458579.1397014322 542212.829303765 557373.1683022189 553918.4758372662 0.8323325042502898 0.7446338820295479 0.7546600757475957 0.5802843392444237 0.7122443984707869 0.887030088201139 0.8278820073807334 0.978867564372523 1.006236824759692 1.0 19.07931413453808 2.0991170762478215 1.1961027701505782 1.0058219295447548 0.7242234774348185 0.7238307264904047 0.0694226459414778 0.25857267500719056 0.6931039297524968 0.05191276112789043 0.02609763646995951 125.63686074126893 -2.0991170762478215 -0.2815984521099363 IPGLLSPHPLLQLSYTATDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IPGLLSPHPLLQLSYTATDR 20 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 232.54 2.3598e-26 12905200000.0 1287910.0 1739600.0 1538990.0 1476900.0 1352340.0 1649700.0 1715920.0 1526560.0 1532380.0 1636800.0 False True 1280976.0356602524 1797501.534389593 1755666.4148591182 1663875.3885700325 1524552.4830528346 1535660.1219760904 1632914.3941490394 1640479.6589146114 1154745.4818399986 1532338.0226650191 0.8359617895745994 1.1730450512892745 1.1457435558543994 1.0858409593441045 0.9949191761236571 1.002167993785923 1.0656358910347334 1.070572964091509 0.7535840426589968 1.0 20.547303149766577 1.2627494399535817 24.98699623353434 0.8767919507205785 1.0539904190145954 0.2975631182550985 0.10396615162184726 216.84161677361163 223997.6560938735 0.06578532931048617 0.023995396659197338 18.312575994220083 -1.2627494399535817 0.17719846829401698 IPGTPGAGGRLS(ph)PENNQVLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPGTPGAGGRLSPENNQVLTK 21 1 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 IPGTPGAGGRLS(1)PENNQVLTK;IPGTPGAGGRLS(1)PENNQVLTK 202.85 3.7307e-22 3294900000.0 866510.0 923660.0 888520.0 939310.0 865900.0 958880.0 1054900.0 985500.0 1321500.0 1093840.0 True False 861844.8064383119 954403.4647357401 1013615.8928457131 1058226.5496903756 976167.2324086021 892594.882560728 1003870.4568906616 1059043.0142676027 995834.03219277 1024030.1947164618 0.8416205019002818 0.9320071514102176 0.989830083209966 1.0333938932175553 0.9532602040888919 0.8716489876627844 0.9803133365306849 1.0341911983960936 0.9724654969461141 1.0 19.96582682482367 4.634521120398419 2.551717405523551 0.9804272177471512 0.827871971995489 0.4826423213342662 0.043508671645830214 0.36580049018996946 3.515835213223714 0.011986744456276299 0.10789457948912139 43104.35197944973 -4.634521120398419 -0.15255524575166224 IPIFSAAGLPHNEIAAQICR ddPTM_BT-474_Trastuzumab_2h_R1 2 IPIFSAAGLPHNEIAAQICR 20 0 P21281;P15313;C9JL73;C9JNS9 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform 0 ; 237.24 1.3603e-29 1461960000.0 443850.0 561110.0 578050.0 583030.0 541050.0 509740.0 557210.0 461750.0 598190.0 543580.0 False True 441460.3609163705 579786.2071518422 659434.41549933 656841.538220588 609949.5104454019 474502.87359889166 530255.6235510902 496208.12971899 450774.0898353337 508888.2590177481 0.8674995995554577 1.139319284494676 1.2958334247525476 1.2907382447541982 1.1985922245931186 0.9324303817006373 1.0419883228875928 0.9750826845106759 0.8858017096040182 1.0 18.95698938052443 2.740990709266822 24.89681546764887 0.9725888020430415 1.1723244106284587 0.39460287446179665 0.11776774067768334 218.54142462886549 2239011.4867655416 0.03863559204253582 0.03926744679245317 550.7959132655856 -2.740990709266822 0.19973560858541717 IPIHNEDITYDELVLMMQR ddPTM_BT-474_Trastuzumab_2h_R1 4 IPIHNEDITYDELVLMMQR 19 0 Q92734-2;Q92734;Q92734-4;Q92734-3;C9JTY3;C9JUE0;C9JJP5 Q92734-2 TFG Protein TFG 0 ;;; 218.69 3.3057e-19 679000000.0 390404.0 469393.0 413534.0 400208.0 429840.0 450347.0 427880.0 457634.0 450137.0 429885.0 False True 388302.10824196227 485016.46225093916 471755.9926980356 450874.2917657491 484577.57613871555 419215.57189280784 407181.8097396683 491784.97289836546 339206.76787677396 402449.3712569352 0.9648470987275045 1.2051614361730256 1.1722120256385071 1.1203254967390621 1.2040708987201956 1.041660397141405 1.0117590902625906 1.221979727195041 0.842855753053754 1.0 18.618447775848562 1.2349354113033637 24.99999954707435 0.9214278542465261 1.1225027200450313 0.4289456355922501 0.09047619787812222 84.6280765773221 583565.3258743682 0.07231915772148631 0.020839566926582256 17.176529171531364 -1.2349354113033637 0.2010748657985052 IPLFNTDVDNLEGKT(ph)PPVFASEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPLFNTDVDNLEGKTPPVFASEGK 24 1 Q96PZ0;Q96PZ0-2 Q96PZ0 PUS7 Pseudouridylate synthase 7 homolog 1 IPLFNTDVDNLEGKT(1)PPVFASEGK;IPLFNTDVDNLEGKT(0.999)PPVFAS(0.001)EGK 109.41 0.003481 392000000.0 977750.0 672660.0 601330.0 610190.0 606590.0 925620.0 880180.0 899730.0 1554760.0 904170.0 True False 972485.9026382365 695049.081468443 685992.0371459423 687439.9914358101 683835.6409593874 861634.0680751087 837602.3307858778 966872.4213363663 1171610.230716632 846465.0965011165 1.1488789161632653 0.8211196000182935 0.8104197562090943 0.8121303456898099 0.8078722250758338 1.017920374551406 0.9895296737551575 1.1422472413014504 1.3841211357201975 1.0 19.691091055088247 1.989237540844144 1.5572356299679024 1.1999479634775647 0.87725096082999 0.45425424507363954 0.13421890462453628 0.3219222155674447 1.4552966608760671 0.0869170400313919 0.041631561816345766 97.55230619732247 -1.989237540844144 -0.3226970026475747 IPLGNDNIQQEGDRDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 IPLGNDNIQQEGDRDYR 17 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 84.375 0.0048325 298340000.0 124750.0 127960.0 122230.0 125840.0 126860.0 117280.0 126370.0 108070.0 120350.0 124230.0 False True 124078.35986102809 132219.07124654666 139438.92155779444 141771.3310973341 143014.86904186985 109172.70964742413 120257.00031972017 116134.73216834062 90691.35510737773 116301.53504134604 1.066867774504587 1.1368643689831077 1.1989430879671785 1.218997935383513 1.229690295927969 0.9387039440933641 1.034010430532735 0.9985657723868724 0.7797949964730586 1.0 16.82751061322492 2.732835092778839 24.983079835729814 0.9611475204823421 1.172716434022285 0.6668207209126764 0.07757335266950387 304.4644514422998 1328514.5872986491 0.025545974347807553 0.024693079898272543 540.5490305270249 -2.732835092778839 0.211568913539943 IPMPDFDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 139.32 3.912300000000001e-05 924080000.0 1525310.0 1794410.0 1680770.0 1692190.0 1607140.0 1921990.0 1826970.0 1571290.0 2040650.0 1746530.0 False True 1517097.900437871 1854135.8521062504 1917407.806485267 1906421.0804958495 1811799.7527349107 1789127.3551778065 1738592.4813968416 1688547.638648951 1537759.1508090633 1635064.9601204386 0.9278517596793964 1.1339829898682894 1.172679895448332 1.1659604523329903 1.1080903798473265 1.0942240209502254 1.0633170692305565 1.0327098187735446 0.9404881080050742 1.0 20.64091652356858 1.6994223028301054 1.5717032272103244 0.9718628805422647 1.1087327820966029 0.36408989382164214 0.06615835475178665 0.38132521947177717 1.8529595320017007 0.05255758959369506 0.02002447213156897 50.05209991367214 -1.6994223028301054 0.1368699015543382 IPMPPS(ph)SPQPR ddPTM_BT-474_Trastuzumab_2h_R1 5 IPMPPSSPQPR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 IPMPPS(0.573)S(0.427)PQPR;IPMPPS(0.5)S(0.5)PQPR;IPMPPS(0.5)S(0.5)PQPR;IPMPPS(0.606)S(0.394)PQPR;IPMPPS(0.5)S(0.5)PQPR 120.77 0.00044634 1941240000.0 902010.0 1032680.0 957680.0 943490.0 774916.0 857610.0 921470.0 805090.0 1020420.0 944110.0 True False 897153.6783827319 1067052.129531757 1092513.0196962173 1062935.7372617896 873596.9593130194 798325.43929679 876894.97574276 865169.9039641834 768951.1639274651 883856.0915067638 1.0150449682971567 1.2072690789658842 1.2360756804127957 1.2026117684494744 0.9883927572686012 0.9032301151376754 0.9921241525278885 0.9788583370956635 0.8699958865663151 1.0 19.75345196512758 3.174333934292357 5.279120900367194 0.9536807901153398 1.1732886861350809 0.7009010829588875 0.06729017725190498 0.10742777060430114 5.769495890134397 0.0195729218092882 0.023866066873318867 1493.9426787010457 -3.174333934292357 0.21960789601974107 IPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_BT-474_Trastuzumab_2h_R1 9 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 IPMTPTSSFVSPPPPT(0.004)AS(0.974)PHS(0.023)NR;IPMTPTSSFVSPPPPT(0.262)AS(0.54)PHS(0.197)NR;IPMTPTSSFVSPPPPT(0.013)AS(0.978)PHS(0.009)NR;IPMTPTSSFVSPPPPT(0.42)AS(0.503)PHS(0.077)NR;IPMTPTSSFVSPPPPT(0.034)AS(0.957)PHS(0.009)NR;IPMTPTSSFVSPPPPT(0.022)AS(0.978)PHSNR;IPMTPTSSFVSPPPPT(0.021)AS(0.978)PHS(0.002)NR;IPMTPTSSFVSPPPPT(0.042)AS(0.872)PHS(0.086)NR;IPMTPTSSFVSPPPPT(0.016)AS(0.921)PHS(0.063)NR 185.18 2.006e-17 10411490000.0 1933906.0 2111937.0 1867007.0 1925012.0 1782396.0 2094727.0 1785276.0 1714952.0 1942240.0 1909317.0 True False 1923494.0649731546 2182231.546352123 2129865.357284242 2168718.321824074 2009373.5655112138 1949923.452946966 1698915.3794633925 1842930.4265898021 1463600.9766826206 1787462.754411478 1.0761030182172746 1.2208542756856617 1.1915578951380723 1.2132942722703748 1.1241484951516094 1.090888997901933 0.9504619748134334 1.0310315121483955 0.8188148105858077 1.0 20.769481749908525 2.4240424187159997 1.3537945083453722 0.9454092627766945 1.17967976147732 0.7082450189467866 0.06509674493649042 0.226829378018389 0.8370269335101702 0.03346944402905241 0.023424372193913294 265.4864857139331 -2.4240424187159997 0.23427049870062555 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR 32 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 0 ;;; 371.1 2.606999999999998e-148 23948325000.0 2263341.3 2674283.3 2402937.6 2606522.8 2342676.2 2695933.3 2352884.2 1818277.6 2860720.0 2117275.5 False True 2251155.7219216567 2763295.2030021055 2741250.32737196 2936508.319227193 2641002.1279402925 2509569.7765153665 2239066.2023555 1953966.7075385693 2155733.8876840733 1982149.1648992489 1.1357145878756714 1.3940904407880734 1.3829687371239268 1.4814769600735136 1.332393229888192 1.2660852275680907 1.129615390206675 0.98578186855977 1.0875739958721258 1.0 20.918634104685555 2.230395143774204 1.9466067758595083 1.022670223316653 1.356675403722464 0.7309124458008156 0.08618817713901462 0.16634018505353387 1.26745884087454 0.042848544937029616 0.027580540269149214 169.97895062666294 -2.230395143774204 0.33400518040581106 IPNIYAIGDVVAGPMLAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 IPNIYAIGDVVAGPMLAHK 19 0 E9PEX6;P09622-2;P09622;P09622-3 E9PEX6 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial 0 108.71 0.0002695 90779000.0 61712.0 71419.0 73587.0 73125.0 77313.0 102410.0 82536.0 66680.0 104310.0 79878.0 False True 61379.74944884776 73796.13824130283 83947.40997032994 82382.6175023248 87158.35227994702 95330.63774720945 78543.41836186136 71656.00019417927 78604.1981823896 74780.11765300354 0.8208030606967418 0.9868416974647379 1.1225899691661985 1.1016647216924498 1.1655284187219557 1.2748126205091694 1.0503248834980492 0.9582226191014986 1.0511376639861767 1.0 16.19036712056729 4.609237891530765 2.615160145588444 1.0892926497172264 0.8010579705740953 0.4944979127852248 0.08387499211220772 0.3475783534229884 3.6538902343613766 0.02387908300423275 0.1906984323392617 40666.602578277474 -4.609237891530765 -0.28823467914313106 IPNPDFFEDLEPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 IPNPDFFEDLEPFR 14 0 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 0 ;;; 110.86 0.0015943 100724000.0 40717.5 65289.0 61860.7 42509.6 62990.9 66286.7 47513.6 42370.4 55795.0 56272.1 False True 40498.281504139544 67462.104896966 70570.14885715659 47891.311001392525 71012.41773868455 61704.456451107784 45215.18564842171 45532.29440053169 42045.06986469588 52680.76640103139 0.7687489053565983 1.280583209124407 1.3395809073835903 0.9090853127841911 1.3479761702421678 1.1712900298637214 0.8582864057865431 0.8643058465383346 0.7981104440400228 1.0 15.68498871365801 2.2373023328028996 24.999998331500215 0.8680010911116084 1.1513190761770828 0.3277473037830435 0.17851559562848937 35.28098296506195 700949.9778235569 0.06242335353977602 0.048671492399879335 172.70397471553656 -2.2373023328028996 0.28331798506547445 IPNSYEVLFPES(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 IPNSYEVLFPESPAR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 IPNSYEVLFPES(1)PAR;IPNSYEVLFPES(1)PAR;IPNSYEVLFPES(1)PAR 79.013 0.022244 146107000.0 83715.0 107905.0 90110.0 94251.0 74387.0 93380.0 94684.0 84584.0 96273.0 95977.0 True False 83264.2877416109 111496.55269504993 102796.70474983928 106183.16693622732 83859.7435237078 86924.86039287585 90103.77319199468 90896.08758884922 72547.80914210714 89851.66568995625 0.9266860786857767 1.240895779047457 1.1440712196093439 1.1817606954847653 0.9333131765534066 0.967426254431613 1.002805818902772 1.0116238457114068 0.807417520699526 1.0 16.4552576285308 3.2345508527505347 24.98852188116512 0.962202460684088 1.1332291738657594 0.43927663650063054 0.09330865500056129 91.26336710366735 568746.4448614741 0.0257015063807247 0.03180352791698532 1716.1326451081388 -3.2345508527505347 0.1710267131816714 IPNYQLS(ph)PTKLPSINK ddPTM_BT-474_Trastuzumab_2h_R1 3 IPNYQLSPTKLPSINK 16 1 O60934;A0A0C4DG07 O60934 NBN Nibrin 1 IPNYQLS(0.912)PT(0.088)KLPSINK;IPNYQLS(0.983)PT(0.017)KLPSINK;IPNYQLS(0.78)PT(0.22)KLPSINK 172.55 2.7443e-09 8818590000.0 11379010.0 7512430.0 7045280.0 6279280.0 5988140.0 10367460.0 9924670.0 9192940.0 15647850.0 11461920.0 True False 11317746.674486855 7762476.691190175 8037194.1853284575 7074236.204170925 6750694.134513511 9650781.892575752 9444575.79617882 9878963.863603443 11791647.037947498 10730410.452556593 1.0547356715315885 0.7234091114697958 0.7490108808851335 0.6592698606869637 0.6291179786981134 0.8993860892130541 0.880169107970011 0.920651069899168 1.098899906027179 1.0 23.35520192637702 1.8620587992645798 1.2573126405681814 1.0356972710789158 0.7630092283585879 0.4326558863189226 0.11784623683258098 0.42082794645746674 1.2347153691553219 0.09347346679656222 0.03941312428009055 72.78783455408433 -1.8620587992645798 -0.272688042720328 IPPMLS(ph)PVHVQDSTDLAPPS(ph)PEPPMLAPVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPPMLSPVHVQDSTDLAPPSPEPPMLAPVAK 31 0 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 2 IPPMLS(0.661)PVHVQDS(0.213)T(0.218)DLAPPS(0.908)PEPPMLAPVAK;IPPMLS(0.559)PVHVQDS(0.216)T(0.228)DLAPPS(0.996)PEPPMLAPVAK 42.524 0.07388600000000001 70735000.0 40491.0 41060.0 37160.0 33872.0 23005.0 43139.0 47896.0 34374.0 55491.0 47710.0 True False 40273.000954973 42426.65727870585 42391.80499948981 38160.19172702557 25934.55038868217 40156.90246828301 45579.08749951186 36939.162427635245 41815.986591304565 44665.10695341399 0.9016658349654915 0.9498837050352782 0.9491034028801218 0.8543624840488329 0.5806445379327555 0.8990665243490167 1.0204629655773836 0.8270250526023153 0.9362114958085497 1.0 15.44686059611819 0.999179199433173 6.004990835293188 0.9999463345514934 0.8736619793444358 0.11869281764654538 0.11086203491667658 0.2861676294854434 48.74888624159072 0.1108705027989348 0.02788388026988225 9.98111821706242 -0.999179199433173 -0.1262843552070576 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRR ddPTM_BT-474_Trastuzumab_2h_R1 2 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRR 32 2 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ; 133.95 2.9589e-08 140142000.0 42856.4 52349.0 41112.9 67800.0 53119.0 72065.0 75157.0 62019.0 117081.0 71138.0 False True 42625.66590419368 54091.40481936127 46901.2389602671 76383.47304830942 59883.38978902011 67083.31617276289 71521.36878237875 66647.17270610087 88227.95635502205 66597.91193569412 0.6400450804726782 0.8122087201711529 0.7042448869200912 1.1469349537875013 0.8991781881516429 1.0072885804218226 1.0739280962958513 1.0007396743978147 1.3247856245134766 1.0 16.02318932430479 4.533775739878948 0.4994656108876874 1.1005851150859272 0.390949001585497 0.6019807447574543 0.1229508309680412 2.522404382409417 0.562455345127763 0.0744374050050063 1.030289928718223 34180.28974350668 -4.533775739878948 -0.7096361135004301 IPRPSVSQGCS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 IPRPSVSQGCSR 12 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 IPRPS(0.001)VS(0.068)QGCS(0.932)R;IPRPSVSQGCS(1)R;IPRPSVSQGCS(1)R 103.77 0.0013387 3194890000.0 942730.0 1171250.0 993720.0 1054020.0 1021860.0 1151060.0 1082150.0 978740.0 1271130.0 1174110.0 True False 937654.446427149 1210234.3482144228 1133627.138430922 1187458.8239288935 1151987.813961259 1071489.931503787 1029802.2702855523 1051778.548741018 957877.0437693489 1099177.2945938576 0.8530511420121804 1.1010365244686031 1.0313414805841614 1.0803160052243035 1.0480454969613566 0.9748108305855234 0.936884591185138 0.9568779794797768 0.8714490814907901 1.0 20.06799267754191 2.5265613476197264 3.530387052283903 0.9403412545443972 1.0304549438463597 0.23205965374842952 0.06922916586858463 0.3163880843273061 7.983495525342374 0.023141755172235535 0.020738434357178554 336.1718526953669 -2.5265613476197264 0.09011368930196251 IPRY(ph)PVLHS(ph)CPT(ph)S(ph)NPR ddPTM_BT-474_Trastuzumab_2h_R1 1 IPRYPVLHSCPTSNPR 16 1 Q8IWF9-2 Q8IWF9-2 4 IPRY(1)PVLHS(1)CPT(1)S(1)NPR 44.382 0.090136 438710000.0 192460.0 229040.0 214250.0 230970.0 213780.0 209670.0 217260.0 213400.0 221030.0 204440.0 True False 191423.8167443164 236663.45794239643 244414.53770561612 260210.77831811257 241003.6158266667 195176.00641009063 206750.30378620262 229324.99162324332 166560.11815025963 191392.4641701099 1.0001638130024735 1.2365348811855499 1.2770332351663551 1.3595664774284784 1.2592116250327514 1.0197685016303355 1.0802426557528548 1.1981923772057135 0.8702543168168877 1.0 17.546174501134093 2.7426998193961283 24.78109299410359 1.0622899137947843 1.237259155330849 0.3960736432217684 0.11601519612340683 374.1381668831032 2239938.627315727 0.03704493351621752 0.03803051888003071 552.9677705379095 -2.7426998193961283 0.17496924153606463 IPS(ph)PIGFTPGPQQLLGDPFQGMR ddPTM_BT-474_Trastuzumab_2h_R1 3 IPSPIGFTPGPQQLLGDPFQGMR 23 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7;H7C0J7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 IPS(1)PIGFTPGPQQLLGDPFQGMR;IPS(1)PIGFTPGPQQLLGDPFQGMR;IPS(0.997)PIGFT(0.003)PGPQQLLGDPFQGMR 184.2 2.1972e-17 703690000.0 431744.0 432224.0 442093.0 397488.0 394428.0 496493.0 437247.0 411156.0 501510.0 480865.0 True False 429419.53827526816 446610.3145550741 504335.85165875807 447809.94004463666 444656.06784208334 462171.6075288085 416095.6921642536 441838.54852786387 377919.58038970584 450175.78401076165 0.9538930202984945 0.9920798284085349 1.1203087095566688 0.9947446218784873 0.9877387536941651 1.0266469764570014 0.9242960348891327 0.9814800445092389 0.8394933575118103 1.0 18.780128927436746 2.2399738679116754 24.99990749099772 0.9394040251156653 1.0145958075688781 0.3008648874115697 0.056815735316574155 48.650903622268196 860633.0671674641 0.020158116407250744 0.016022266740848952 173.76962660611414 -2.2399738679116754 0.07519178245321279 IPS(ph)PLQPEMQGTPDDEPSEPEPSPSTLIYR ddPTM_BT-474_Trastuzumab_2h_R1 3 IPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 30 0 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 IPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR;IPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR;IPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR 101.3 0.0002773 248381000.0 95255.0 101686.0 101858.0 92313.0 94664.0 111435.0 103730.0 87885.0 110073.0 109224.0 True False 94742.15766382536 105070.5570395149 116198.72103439273 103999.81633493486 106718.89928251275 103731.7607397742 98712.18361291895 94443.42497098737 82946.98405263318 102253.23080862906 0.9265443929213253 1.0275524421928397 1.1363819031973983 1.0170809813293293 1.0436726393735312 1.0144594935480549 0.96536982579712 0.9236228941043628 0.8111918165976753 1.0 16.64178690193587 2.0070597281370546 1.8637662458192579 0.9003881090427895 1.0347319100078474 0.39972990751845183 0.06391055360107899 0.32126235429013794 2.0849539447812138 0.03773813699564829 0.019292283169219954 101.63884662683449 -2.0070597281370546 0.13434380096505782 IPS(ph)PNILK ddPTM_BT-474_Trastuzumab_2h_R1 6 IPSPNILK 8 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK 123.51 0.0014102 7465490000.0 11636250.0 11898310.0 10689710.0 10116310.0 10091390.0 12764390.0 13340510.0 11907610.0 16637030.0 13166190.0 True False 11573601.722908909 12294338.055669734 12194728.25137505 11397033.80875137 11376468.700145315 11882017.76344207 12695178.56560283 12796216.323818393 12537056.881280418 12325912.482057625 0.9389651062147465 0.9974383700651897 0.989357036984196 0.9246401696703276 0.9229717245441763 0.9639868675636212 1.0299585190210243 1.0381557018553695 1.0171301231880518 1.0 23.555191116868333 2.268566775703469 5.898300839913229 1.0263047161642347 0.9562404070196023 0.621088254674633 0.02481726925909123 0.11787946241447966 11.70562092953285 0.009598289419096483 0.007774705739238598 185.59521526477315 -2.268566775703469 -0.07006430914463235 IPSIVS(ph)SPLNSPLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IPSIVSSPLNSPLDR 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 IPS(0.001)IVS(0.666)S(0.333)PLNSPLDR 98.439 0.003071 49502000.0 47466.0 54592.0 48421.0 53400.0 50776.0 50487.0 46300.0 48357.0 49085.0 45657.0 True False 47210.44832996837 56409.06171843914 55238.255917123155 60160.434524774624 57242.02262706915 46996.952523614505 44060.29211682394 51965.64489187054 36988.65945530239 42743.131171075715 1.1045154399431478 1.3197222611667523 1.2923305898212458 1.4074877735088627 1.3392098580228684 1.0995205834479753 1.0308157336549912 1.21576598316774 0.8653708430310932 1.0 15.383404976819975 2.668498844282878 5.128451735214368 1.0647954583184949 1.300365815176584 0.562399991211701 0.10965399025480126 0.1790432035660382 9.000600884421782 0.036006355801437274 0.03407575514141497 466.1211875878899 -2.668498844282878 0.23557035685808914 IPSIVSSPLNS(ph)PLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IPSIVSSPLNSPLDR 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 IPSIVS(0.011)S(0.063)PLNS(0.925)PLDR;IPSIVS(0.005)S(0.033)PLNS(0.962)PLDR 86.37799999999999 0.0079513 58490000.0 37575.0 48830.0 38650.0 49848.0 45662.0 45711.0 45085.0 41774.0 42320.0 47646.0 True False 37372.700374974964 50455.277031641665 44091.58404817764 56158.75168896938 51476.78504012193 42551.10616211979 42904.06630857468 44891.38800407385 31890.803058946654 44605.19148820716 0.8378553959320107 1.131152570995714 0.988485478418688 1.2590182849863292 1.1540536722890542 0.9539496355120359 0.9618626190612313 1.0064162153847576 0.7149572055391362 1.0 15.444924011184234 2.6214626929438394 6.1345427704594 0.9352051498532529 1.0824251471426585 0.2434305123150201 0.12881035202883867 0.3590025676350624 16.831563352379284 0.041759052965636485 0.0392622766647047 418.27575610334435 -2.6214626929438394 0.1472199972894056 IPSKEEEADMS(ph)SPTQR ddPTM_BT-474_Trastuzumab_2h_R1 3 IPSKEEEADMSSPTQR 16 1 O00515;E9PDI4 O00515 LAD1 Ladinin-1 1 IPSKEEEADMS(0.688)S(0.312)PTQR;IPSKEEEADMS(0.5)S(0.5)PTQR;IPSKEEEADMS(0.586)S(0.411)PT(0.002)QR 139.17 1.5887e-06 2252720000.0 2501570.0 2638700.0 2294630.0 2089320.0 2176900.0 2829460.0 2499830.0 2265950.0 3413090.0 2692900.0 True False 2488101.8250705567 2726527.5343721635 2617693.9587184996 2353827.697777193 2454115.3115028134 2633866.09003241 2378903.672622028 2435046.695260956 2571979.702562858 2521036.816492316 0.9869359339751398 1.0815103994259634 1.0383402343011672 0.9336744637677399 0.9734547688666385 1.0447551074232548 0.9436211550182566 0.9658909696721512 1.020207117062821 1.0 21.265585756375465 3.841672923400894 9.941710876165013 0.9805272400685792 1.0405057263782824 0.28194242257361346 0.03801735706670406 0.48312844651594306 43.65865261068396 0.009566214154684623 0.01727445196963164 6945.010767489889 -3.841672923400894 0.05997848630970326 IPSKEEEADMSS(ph)PTQR ddPTM_BT-474_Trastuzumab_2h_R1 7 IPSKEEEADMSSPTQR 16 1 O00515;E9PDI4 O00515 LAD1 Ladinin-1 1 IPSKEEEADMS(0.042)S(0.848)PT(0.11)QR;IPSKEEEADMS(0.005)S(0.995)PTQR;IPSKEEEADMS(0.023)S(0.976)PT(0.001)QR;IPSKEEEADMS(0.03)S(0.97)PT(0.001)QR;IPSKEEEADMS(0.131)S(0.868)PT(0.001)QR;IPSKEEEADMS(0.135)S(0.865)PT(0.001)QR;IPSKEEEADMS(0.091)S(0.906)PT(0.002)QR 201.95 1.9164e-11 10005800000.0 5677000.0 5268000.0 5042660.0 4752270.0 4826270.0 5965240.0 5419640.0 4827430.0 6775170.0 5605680.0 True False 5646435.662773994 5443342.195426751 5752622.696413546 5353906.894738775 5440866.876956537 5552876.999464533 5157471.308164655 5187677.339792845 5105520.136126745 5247920.703135892 1.0759376869776194 1.0372378896986925 1.0961718024771354 1.0201958447160893 1.0367662136558868 1.0581099284039135 0.982764717668621 0.9885205271285733 0.9728653356130065 1.0 22.32331449010774 2.2372138629680625 24.99412716327335 0.9853668048262689 1.0528922707962052 0.7164284139164412 0.020958849551624588 18.732863831717157 347648.1642582444 0.007414158918471798 0.0057764382954440825 172.66879688893658 -2.2372138629680625 0.06752546596993625 IPSTENSSQEISVEERT(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 IPSTENSSQEISVEERTPTK 20 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 IPSTENSS(0.001)QEIS(0.011)VEERT(0.982)PT(0.005)K 66.36 0.038201 76849000.0 85419.0 78364.0 69914.0 71121.0 71516.0 113030.0 112930.0 93312.0 136130.0 108410.0 True False 84959.11359494303 80972.29836796166 79757.2834966181 80124.91130779962 80623.13869145804 105216.50214400033 107467.14446550599 100275.41526873504 102582.58554854467 101491.1809855294 0.8371083356203777 0.7978259547448431 0.7858543247022604 0.7894765883079419 0.7943856590155678 1.0367058607683568 1.0588816035240407 0.9880209718224907 1.0107536886694706 1.0 16.630994845185082 2.740593225292287 24.999978396277754 1.018970072093663 0.7992838506687573 0.9593885392268795 0.02241886399678842 33.77137837987609 415371.0838108162 0.007378170350154755 0.007477663779153184 550.2920330634355 -2.740593225292287 -0.21968622142490568 IPTNDELLYDPEKDNR ddPTM_BT-474_Trastuzumab_2h_R1 3 IPTNDELLYDPEKDNR 16 1 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 0 ;; 150.59 6.6139e-07 722040000.0 535440.0 521530.0 444190.0 430660.0 454870.0 557750.0 524330.0 501070.0 736110.0 569790.0 False True 532557.2505329764 538888.8107784577 506728.0910313073 485181.5118434348 512794.9982742813 519194.0553022756 498966.1547648878 538462.3877819048 554705.5538686491 533425.5143782387 0.9983722866232329 1.010241910544131 0.9499509816697652 0.9095581271716312 0.9613244669632941 0.9733206254812327 0.9353998661771611 1.0094425055943135 1.0398931789290478 1.0 19.024927306799633 1.6001034429609393 5.763698358654856 1.0212190985911425 0.9623841196303073 0.42812043773497355 0.0286350748722688 0.1347480532114266 9.484359620053791 0.016822654982270542 0.007913159696835939 39.82020054892793 -1.6001034429609393 -0.058834978960835116 IPTPVIHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPTPVIHTK 9 0 P12532;P12532-2 P12532 CKMT1A Creatine kinase U-type, mitochondrial 0 ; 136.63 0.00018722 755720000.0 660180.0 666690.0 686000.0 547010.0 568690.0 823270.0 717380.0 603780.0 869130.0 695620.0 False True 656625.6642328928 688880.3736273845 782582.8371811085 616261.4099138018 641109.3006102876 766359.2826691245 682677.5887422706 648837.1295327167 654944.5572453282 651224.9360497561 1.008293183943319 1.0578224749900416 1.2017089547094926 0.9463111373651654 0.9844667566005247 1.1767965878545101 1.0482976786535572 0.9963333613551049 1.0057117302941974 1.0 19.31279641732499 1.806833255096229 5.010903007294715 1.001150624104526 1.0635951038020008 0.12087182153966491 0.07426307151237571 0.47124315527960625 20.44798848644709 0.03618510907746817 0.020282824260595005 64.09634350593917 -1.806833255096229 0.0624444796974748 IPTRPFEEGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 IPTRPFEEGKK 11 2 Q9H8Y8;Q9H8Y8-3;Q9H8Y8-2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 0 ; 108.56 0.0011508 3734300000.0 3675900.0 3322100.0 2903900.0 2970100.0 2856650.0 3898900.0 3848000.0 3878600.0 5917700.0 3875700.0 False True 3656109.3628308834 3432674.09024814 3312743.878848718 3346114.355468785 3220427.4448089045 3629378.220023381 3661857.539212495 4168040.8271317338 4459362.128117409 3628349.5078462935 1.0076508216544628 0.9460704055177137 0.913016750917992 0.9222139014537668 0.8875736578972729 1.0002835206958047 1.0092350616426948 1.1487429251560137 1.229033233560894 1.0 21.790882002299263 1.9947679549742228 2.0657242986641724 1.1416757788923955 0.9380477751273574 0.6151537277643708 0.06310682218390211 0.18868563469687233 1.499777063961608 0.03481990558373185 0.01816921335203267 98.80250484413335 -1.9947679549742228 -0.2036280037650381 IPVEGPLS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 5 IPVEGPLSPSR 11 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 IPVEGPLS(0.89)PS(0.11)R;IPVEGPLS(0.596)PS(0.404)R;IPVEGPLS(0.617)PS(0.383)R;IPVEGPLS(0.982)PS(0.018)R;IPVEGPLS(0.827)PS(0.173)R 172.74 1.3639e-05 1688763000.0 568990.0 593976.0 607186.0 565337.0 575475.0 605884.0 592632.0 530934.0 626568.0 587970.0 True False 565926.6210607326 613746.1320939256 692672.5110446782 636908.6062346916 648758.3301424412 564000.6651775235 563964.1260859098 570554.9911082234 472158.7119810515 550445.2512135567 1.0281251765058277 1.1149994131856176 1.2583858422205578 1.1570789371522612 1.178606462154293 1.0246262710670706 1.0245598900936073 1.0365335877643256 0.8577759748859521 1.0 19.07023955097734 2.333669568496234 1.2859130669708345 0.9671073576125974 1.1524300495896291 0.5538077735840155 0.0712549718632843 0.35886436817366635 1.1748556735752036 0.043414880520674035 0.02739554269196005 215.61033209244025 -2.333669568496234 0.18532269197703177 IPVEGPLS(ph)PSRGDFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IPVEGPLSPSRGDFPK 16 1 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 IPVEGPLS(0.972)PS(0.028)RGDFPK 99.86 0.0013631 145520000.0 180720.0 212620.0 185390.0 176880.0 165850.0 221260.0 233570.0 194850.0 314220.0 227340.0 True False 179747.02359987967 219696.9281684956 211491.30056123302 199272.98986408525 186970.01443003415 205964.81699001614 222271.32677595186 209390.6964282518 236784.69133228326 212830.9665644335 0.8445529637975034 1.0322601626769545 0.9937054930265756 0.9362969735128105 0.8784906512813769 0.9677389541322283 1.0443561402924906 0.9838356692556758 1.1125481181357972 1.0 17.699348550363748 2.362970081891978 4.926820033625107 1.0284952990670266 0.9435103163304369 0.37795813879775186 0.058889194981726 0.25769089176199383 10.070123388725303 0.020837596320840538 0.017236303012841164 230.658828471054 -2.362970081891978 -0.08498498273658972 IPVEGPLSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 IPVEGPLSPSR 11 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 IPVEGPLS(0.374)PS(0.626)R 135.1 0.00013333 291700000.0 200680.0 305600.0 282910.0 309390.0 291960.0 282690.0 278950.0 236840.0 213710.0 252330.0 True False 199599.56117764418 315771.71126089885 322741.2689021976 348558.74227752833 329139.37541750225 263148.30568068166 265456.12280751683 254514.20344915174 161044.03406728455 236226.08336941863 0.8449514055799816 1.3367351596270762 1.3662389195078153 1.4755302941396187 1.3933235937488857 1.113968034042884 1.1237375611582539 1.0774178694362617 0.681736884302646 1.0 17.849808745988643 1.7958703592888383 1.3259616697152716 0.8655511133581578 1.2864653812020548 0.41300377886362827 0.18580542068582276 0.40776494366499005 1.3473348541066277 0.14867411278569312 0.0599789779769225 62.49861010957861 -1.7958703592888383 0.42091426784389696 IPVHPNDHVNK ddPTM_BT-474_Trastuzumab_2h_R1 6 IPVHPNDHVNK 11 0 P07954-2;P07954 P07954-2 FH Fumarate hydratase, mitochondrial 0 ;;;;; 135.99 6.2801e-05 2953360000.0 2927350.0 3085830.0 2831910.0 2638190.0 2885510.0 4145530.0 3145150.0 1496950.0 4088520.0 2920400.0 False True 2911589.472859158 3188539.9861263735 3230618.3125970177 2972184.583500282 3252962.5947422804 3858959.268627951 2993007.0788602307 1608660.0103580768 3080959.0293611703 2734017.5717197666 1.0649490709116747 1.166247071382464 1.1816377283065072 1.0871124656417999 1.1898104197977353 1.411461033953987 1.0947285452073936 0.5883868585914716 1.126898035049266 1.0 21.382591084598616 1.982710696474196 24.605127909219757 0.854909502830203 1.1847771127943783 0.378972295349564 0.15547495917546567 490.75869202271207 698418.5311903616 0.06106833000094678 0.04043786358831614 96.09719175350436 -1.982710696474196 0.3298676099641753 IPWFQYPIIYDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IPWFQYPIIYDIR 13 0 Q99623-2;Q99623;F5GY37;J3KPX7;F5H0C5 Q99623-2 PHB2 Prohibitin-2 0 98.943 0.0071836 125970000.0 41698.0 70531.0 70313.0 37558.0 43481.0 56041.0 52627.0 41923.0 86357.0 57629.0 False True 41473.50260108331 72878.58169811017 80212.45922844806 42312.838949091485 49018.0476179217 52167.01757632422 50081.23095533682 45051.50714068051 65075.47447451461 53951.06788133083 0.7687244058320994 1.350827417511211 1.4867631425735817 0.784281768845828 0.9085649189695437 0.9669320668697281 0.9282713562870342 0.8350438445402872 1.2061943726054263 1.0 15.71936389555288 3.72269022048438 24.999859629911636 0.9324376420956547 1.216977263758884 0.2495554253710459 0.20108487071360648 952.539888600492 1500489.427467423 0.05230478187154967 0.08132755256770645 5280.68449510368 -3.72269022048438 0.2845396216632293 IPWHMGHS(ph)IEEIPIFGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IPWHMGHSIEEIPIFGLK 18 0 Q16630-2 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 IPWHMGHS(1)IEEIPIFGLK 99.003 0.0018669 116970000.0 42786.0 26517.0 30113.0 38140.0 28631.0 31536.0 30198.0 14100.0 38079.0 29749.0 True False 42555.644929971495 27399.60231513501 34352.64865311187 42968.5200894177 32276.988140767608 29355.99054775896 28737.207372437366 15152.213598349254 28694.940682458164 27850.39335059971 1.5280087571565713 0.9838138359559294 1.233470860560472 1.5428335086151468 1.1589419127565959 1.0540601771115319 1.0318420645149904 0.5440574360154585 1.030324431013477 1.0 14.765410083450556 2.422188216751257 1.7267996397650582 0.8179316068640082 1.286596312427665 0.45152946947436057 0.20195267247218068 0.2964724613667142 1.7978201273127359 0.09275375326282229 0.06934059153287342 264.3554186055621 -2.422188216751257 0.4686647055636567 IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVK ddPTM_BT-474_Trastuzumab_2h_R1 6 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVK 43 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 IQALGLHLPDPPLES(0.999)EDEDEEGAT(0.001)ALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(0.495)EDEDEEGAT(0.495)ALNNHS(0.005)S(0.005)IPMDPEHVELVK;IQALGLHLPDPPLES(0.992)EDEDEEGAT(0.008)ALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(0.989)EDEDEEGAT(0.011)ALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVK 245.23 2.161e-55 3941954000.0 253086.8 399199.0 434430.0 426297.0 449463.0 483288.0 473939.0 372158.0 479006.0 488565.0 True False 251724.208789387 412486.09739410854 495593.96786674776 480266.15649078373 506699.448874082 449879.4380975812 451012.7599472014 399930.3197400321 360961.389651555 457384.3634184594 0.550355956438951 0.9018369021433432 1.0835393762976775 1.0500274930723634 1.107819788781245 0.9835916443124839 0.9860694768320519 0.8743856408885083 0.7891861168006581 1.0 18.803047519669892 4.711706181423331 3.50849232119041 0.9815885517649442 0.5102491679100901 0.6756611620074997 0.08973838624443646 0.16700788206228123 3.636632845821238 0.024165026969235767 0.19994314334945437 51488.01885084926 -4.711706181423331 -0.4713393838548541 IQALGLHLPDPPLESEDEDEEGAT(ph)ALNNHSSIPMDPEHVELVK ddPTM_BT-474_Trastuzumab_2h_R1 1 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVK 43 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 IQALGLHLPDPPLES(0.442)EDEDEEGAT(0.544)ALNNHS(0.011)S(0.003)IPMDPEHVELVK 105.15 2.3594e-06 413260000.0 29874.0 65274.0 62020.0 61046.0 79435.0 82944.0 66590.0 52790.0 79643.0 86396.0 True False 29713.16170331343 67446.60563103367 70751.87691249621 68774.41734081258 89550.57640186767 77210.27650917422 63368.78730149683 56729.457862188436 60016.049811523895 80882.13331266315 0.3673637240557483 0.8338875703278962 0.8747528535009484 0.8503041960448025 1.1071737692142123 0.9546023744292851 0.7834707704423965 0.7013842926581995 0.7420186307342069 1.0 16.303533429201494 4.738949909997923 4.694005409997705 0.8624028311360457 0.3378832995762643 0.6304735328457516 0.11588786680496983 0.13582188083804989 8.267562989229395 0.03131001641023761 0.23429051196259268 54821.37322256146 -4.738949909997923 -0.5245195315597814 IQALGLHLPDPPLESEDEDEEGATALNNHS(ph)SIPMDPEHVELVK ddPTM_BT-474_Trastuzumab_2h_R1 1 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVK 43 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 IQALGLHLPDPPLES(0.236)EDEDEEGAT(0.236)ALNNHS(0.264)S(0.264)IPMDPEHVELVK 76.202 0.00038331 63983000.0 12060.0 27609.0 26409.0 25819.0 29835.0 38763.0 33504.0 31718.0 41428.0 37301.0 True False 11995.070299991969 28527.948875007078 30127.15764885701 29087.682752718294 33634.31040410049 36083.405048287044 31883.28352229093 34084.95822074054 31218.62450675903 34920.41824500723 0.3434973262872351 0.8169417867463795 0.8627375948787342 0.8329706290639036 0.9631703196713395 1.0333039196472422 0.9130269660172086 0.9760753144935157 0.8939934306549302 1.0 15.091783217909251 4.871318145188647 1.5283998515147723 0.9426305966180228 2.340863238914419e-23 0.9053686844611563 0.05730023226534083 0.43597241639108025 0.7441745073904282 0.015612760031797636 0.6778243050447228 74356.36407134515 -4.871318145188647 -0.9426305966180228 down IQDFNDTFYR ddPTM_BT-474_Trastuzumab_2h_R1 4 IQDFNDTFYR 10 0 Q8TBC4;F8W8D4;Q8TBC4-2 Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit 0 ;;; 163.16 1.5233e-05 660000000.0 613050.0 719720.0 690540.0 699770.0 605920.0 646460.0 679260.0 596880.0 796510.0 649340.0 False True 609749.4069162584 743675.4451200729 787762.029718721 788360.8102509661 683080.3204307884 601771.7418031543 646401.5987748128 641422.2164952272 600220.783187183 607898.5652720566 1.003044655391436 1.2233544995903243 1.295877428771639 1.2968624295044127 1.123674835661251 0.9899213062525319 1.0633379246182701 1.0551467845760871 0.9873699618267111 1.0 19.213471088257833 2.988577369742168 5.324180004940474 1.0306001051921674 1.2131294811421098 0.5413106994538397 0.08022381384639612 0.14040888367353638 12.61416209924642 0.024920942672715028 0.0281165205430841 974.0412957337265 -2.988577369742168 0.18252937594994245 IQDPTEDAEAEDT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 IQDPTEDAEAEDTPR 15 0 O96028;O96028-5;O96028-3;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR 155.24 2.6116e-05 1088740000.0 576480.0 732990.0 712110.0 763940.0 686620.0 710900.0 712180.0 623450.0 701540.0 860870.0 True False 573376.2957329492 757387.1290481888 812368.8982289217 860654.7256714673 774056.9870844136 661757.1562785977 677729.1326082008 669975.0048149531 528654.8671543818 805928.5395721133 0.7114480596969159 0.9397695848447105 1.007991227932228 1.0679045143734571 0.9604536247039707 0.8211114556508202 0.8409295605389819 0.8313082015567519 0.6559574964736419 1.0 19.620292397339608 2.7352484882017913 23.193362693996892 0.8215324851510069 0.9487981361490154 0.17280352361887596 0.11574985823421188 166.19292352287624 1163767.9708924256 0.036781269191306094 0.036053809054443754 543.5612493826014 -2.7352484882017913 0.12726565099800857 IQEELEHLNQASEEINQVELQLDEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 IQEELEHLNQASEEINQVELQLDEAR 26 0 Q7L8J4 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 0 ;; 195.09 5.2465e-19 99837000.0 32047.7 37773.0 34265.0 37416.0 35803.6 41304.0 40688.0 41712.0 40853.0 45522.0 False True 31875.158744034183 39030.25147073933 39089.214163280936 42152.861763651104 40362.976235436654 38448.75169915768 38719.76599674587 44824.76124924424 30785.32555215377 42616.746986655024 0.747949127933569 0.9158430483434419 0.9172266052010329 0.9891149546644379 0.9471153734018198 0.9021981830569445 0.908557521034408 1.0518109527055324 0.7223762424146043 1.0 15.379132853352074 4.794539965235174 2.581416689779845 0.9380574017059379 0.6910928757901286 0.29606808111864824 0.0828278622544818 0.7303629855945292 5.487624338229214 0.019355063135259556 0.415200918475091 62307.44821950653 -4.794539965235174 -0.2469645259158093 IQEFKPSNK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQEFKPSNK 9 1 A0AVT1;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ; 79.07 0.025521 1351510000.0 1607050.0 1509420.0 1331070.0 1216400.0 1251270.0 1872370.0 1679870.0 1582270.0 2247000.0 1767250.0 False True 1598397.8213600405 1559660.132236341 1518473.0861321548 1370396.1152796973 1410611.8176416564 1742937.4689848863 1598608.2703734133 1700347.0220042586 1693256.9582574002 1654462.591981154 0.9661130019543216 0.9426989403058725 0.9178044239210286 0.8283028712294437 0.8526102823228564 1.0534765049584998 0.9662402027833962 1.0277337367707782 1.023448318785976 1.0 20.65793124146819 2.7362655126637816 24.995833643059154 1.012855052896483 0.9006330436552736 0.6353101411123954 0.04267523598207831 146.51969863853805 1595730.3407737263 0.014628116851097588 0.014409840972765682 544.8356447594256 -2.7362655126637816 -0.1122220092412094 IQEHFNK ddPTM_BT-474_Trastuzumab_2h_R1 3 IQEHFNK 7 0 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;I3L352;Q9UMR2-3;Q9NUU7-2 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 ;; 98.997 0.010852 1890160000.0 2110290.0 2230360.0 2131330.0 2029470.0 2119040.0 2550540.0 2375230.0 2140050.0 2995160.0 2545460.0 False True 2098928.4331152607 2304596.184318909 2431402.7381475386 2286400.6939137513 2388887.183465903 2374227.1731253527 2260331.0506402557 2299751.3979537087 2257042.951087774 2383006.5635220506 0.8807900344231842 0.9670960288555596 1.0203088717279734 0.9594605104798716 1.002467731324735 0.9963158345717177 0.9485206987006858 0.9650629726150263 0.9471408873301195 1.0 21.184351494477063 4.726132989897712 4.5820632665580865 0.9779119040858978 0.8755559232188667 0.609558614270991 0.023585524421121763 0.11979126503697243 6.562764383313017 0.0057260649874061684 0.038603386756084906 53227.122670451026 -4.726132989897712 -0.10235598086703113 IQEIIEQLDVTTSEYEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 IQEIIEQLDVTTSEYEKEK 19 1 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ;; 213.18 4.3073e-17 421346300.0 394527.0 377689.0 348746.0 327100.0 422112.0 658440.0 431203.0 363271.0 837592.0 522793.0 False True 392402.9104680707 390260.150047178 397846.40544542746 368510.8264616816 475865.46114616015 612923.5926010397 410344.0635345753 390380.12667276105 631178.6747577792 489427.9031543943 0.801758354885385 0.7973802628169057 0.8128805139250986 0.7529420045048629 0.9722891933197446 1.2523266218593336 0.8384157521258625 0.7976253992809483 1.2896254395995652 1.0 18.90073682880655 3.1852409339437773 6.544216461429823 0.9992276554469314 0.793380506347142 0.3695778023719615 0.14745621688720256 0.2640844704150032 24.239804065271876 0.0451584894491778 0.054644480141546874 1531.937100117913 -3.1852409339437773 -0.2058471490997894 IQELEDLLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQELEDLLAK 10 0 P20700;E9PBF6 P20700 LMNB1 Lamin-B1 0 ; 152.62 4.119e-05 198476000.0 194849.0 213074.0 217124.0 194121.0 194244.0 253420.0 240320.0 245120.0 349990.0 253820.0 False True 193799.95463375884 220166.03928404718 247693.17192436018 218696.69869632533 218979.8220256109 235901.6718865129 228694.8034884477 263412.0990941394 263739.65412572626 237620.9902937651 0.8155843235657281 0.9265428908947027 1.0423875921825891 0.9203593437850582 0.9215508350288896 0.9927644506273345 0.9624351923023208 1.1085388490658565 1.1099173259048845 1.0 17.858302756935647 1.831532752342251 4.42711732549888 1.0821107816009106 0.9422436963560004 0.4910929036999655 0.06179177262850974 0.182870656264978 5.690629349032784 0.030148601240373826 0.016793611903060564 67.84732856690978 -1.831532752342251 -0.1398670852449102 IQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 IQEQESSGEEDSDLSPEER 19 0 P41236;E7EMN6;Q6NXS1 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 2 IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER 237.09 4.8149e-24 6403200000.0 1478330.0 1620750.0 1416360.0 1590170.0 1525170.0 1803190.0 1630880.0 1541410.0 1748090.0 1765420.0 True False 1470370.8355379046 1674695.6839859344 1615771.1767781866 1791485.3589561947 1719391.3591091663 1678539.7195526846 1551988.1038333871 1656437.8413213824 1317296.64270591 1652749.3841478955 0.8896514194110443 1.013278661634083 0.9776262464688356 1.0839425360789512 1.0403218876379308 1.0156045046225117 0.9390341443893759 1.002231709906453 0.7970335099444407 1.0 20.656436546429603 -0.5398939759621675 5.371105550176139 0.9999999912959967 0.9811410612690522 0.001282803366380203 0.07796613021638496 0.0 1.0123138791184923e-10 0.07297746216499988 0.017200952533904534 0.2884735665867581 0.5398939759621675 -0.018858930026944498 IQEQESS(ph)GEEDSDLSPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 IQEQESSGEEDSDLSPEER 19 0 P41236;E7EMN6;Q6NXS1 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 1 IQEQES(0.247)S(0.753)GEEDSDLSPEER;IQEQES(0.226)S(0.774)GEEDSDLSPEER 376.21 3.0671999999999996e-108 1620270000.0 898360.0 944260.0 814250.0 1019010.0 888780.0 908390.0 941550.0 853280.0 874410.0 1022620.0 True False 893523.3295771792 975689.1232827768 928889.322412125 1148016.5615185509 1001960.8647882163 845595.137420052 896003.6294297106 916956.0864680447 658923.3719937032 957355.5160909708 0.9333244699164337 1.0191502601527433 0.9702658070064946 1.199153858961484 1.0465922512039998 0.883261362375334 0.9359152523487101 0.9578010165044192 0.688274482069303 1.0 19.86869524664664 2.740705507766975 24.443181693373628 0.8996739838112858 1.038557220534883 0.32569891637737713 0.10083984243106005 174.80771429454376 1992115.5869448518 0.03147589542558416 0.031928132235142126 550.4343239326257 -2.740705507766975 0.13888323672359715 IQEQSTS(ph)PDTSLGSTTPSSHTLELVALDSEVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 IQEQSTSPDTSLGSTTPSSHTLELVALDSEVLR 33 0 A0A494C0H4;H0Y9M2;Q17R98-2;Q17R98;A0A5F9ZGW8 A0A494C0H4 ZNF827 Zinc finger protein 827 1 IQEQS(0.027)T(0.169)S(0.803)PDTSLGSTTPSSHTLELVALDSEVLR 157.45 1.0362e-11 277060000.0 46774.0 81686.0 91468.0 77187.0 74763.0 94708.0 97689.0 83164.0 77822.0 98085.0 True False 46522.17398107997 84404.86912977017 104345.89934589156 86958.86628583868 84283.62489498133 88161.05887865153 92963.40986177999 89370.11997823523 58643.81086137402 91825.13132520662 0.5066387960428576 0.9191913794366714 1.1363544798682788 0.9470050848919166 0.9178709976083085 0.9600972806281272 1.012396154736137 0.9732642762221951 0.6386466320824732 1.0 16.48660143380166 4.731567685949579 5.0179707303600365 0.9552903413985727 0.4868287587653755 0.5522727187437193 0.11845546510764585 0.11226094713146005 8.911712535089794 0.027590649601162805 0.18112756518829498 53897.3839333501 -4.731567685949579 -0.4684615826331972 IQFKPDDGISPER ddPTM_BT-474_Trastuzumab_2h_R1 4 IQFKPDDGISPER 13 1 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 ;;; 126.48 0.00017146 2976870000.0 3045300.0 3010600.0 2770040.0 2611730.0 2697360.0 3274570.0 3341980.0 3097640.0 4020600.0 3389120.0 False True 3028904.4431646373 3110806.001053868 3160037.5543807023 2942374.7502132915 3040852.807494706 3048206.683408642 3180315.659796619 3328801.6262971987 3029777.003279796 3172823.4600283867 0.9546400804592948 0.9804535424816974 0.9959701805635383 0.9273679381414327 0.9584059263944992 0.9607236966727958 1.0023613667330125 1.049160682349284 0.954915091069293 1.0 21.597335819408226 2.185974761724615 5.232813093203552 1.0110426431309938 0.9633544903147819 0.30414931885161034 0.027405299576096998 0.20242494506249692 11.76738086016447 0.010495474295262878 0.007784015683530332 153.4527803769251 -2.185974761724615 -0.04768815281621186 IQFKPDDGTTPER ddPTM_BT-474_Trastuzumab_2h_R1 7 IQFKPDDGTTPER 13 1 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 ;;;;;; 150.26 4.0274e-05 10665840000.0 6568500.0 6843600.0 5916000.0 5832720.0 5896010.0 6984050.0 7229060.0 6634680.0 8985330.0 6945110.0 False True 6533135.925828949 7071385.088956441 6748921.377206184 6571141.753957753 6646831.925110798 6501259.062185316 6879362.750109009 7129793.5118223885 6771015.818753437 6501867.133792176 1.0048092019405102 1.0875929857447113 1.0379974303273583 1.0106545733310262 1.0222958710683576 0.9999064773865188 1.058059570973832 1.0965763164809519 1.041395599052219 1.0 22.632422644057815 2.0364719214392166 24.012601584598173 1.0618704980732367 1.0294281519733717 0.04119965112752022 0.03284690690069561 191.40024788849544 126014.21503531751 0.012307139269008921 0.009089402561424912 108.76068180145948 -2.0364719214392166 -0.03244234609986507 IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQFTSLYHKEEAPASPLRPLYPQISPLK 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 IQFT(0.009)S(0.01)LYHKEEAPAS(0.98)PLRPLYPQIS(1)PLK;IQFT(0.004)S(0.004)LY(0.001)HKEEAPAS(0.991)PLRPLY(0.217)PQIS(0.784)PLK 98.74 0.0029306 663330000.0 178733.0 188440.0 217259.0 185048.0 200842.0 320420.0 346440.0 273280.0 460990.0 366900.0 True False 177770.72138710305 194712.11148561432 247847.17875091903 208475.05782660088 226418.03821620115 298270.1195875484 329681.37367068045 293673.541287722 347385.1914495231 343484.1278811067 0.5175514877026179 0.566873679685752 0.7215680686028924 0.6069423327146058 0.6591804972559702 0.8683665281057511 0.9598154526220091 0.8549843135382778 1.0113573328481913 1.0 18.38988390926979 2.7184464071360352 2.3213316265992487 0.9370421688402072 0.6079063505196567 0.8713930238400407 0.06312519459019209 0.11061612698594706 1.1764158562662155 0.023130473752319844 0.022685522162197023 522.9334311012881 -2.7184464071360352 -0.3291358183205505 IQHEELNNR ddPTM_BT-474_Trastuzumab_2h_R1 3 IQHEELNNR 9 0 Q15075 Q15075 EEA1 Early endosome antigen 1 0 ;; 136.52 0.00019058 711590000.0 428310.0 504420.0 492490.0 507400.0 459150.0 463100.0 450490.0 396250.0 483130.0 444930.0 False True 426004.0265497142 521209.31477167143 561828.3112001811 571636.7879751066 517620.030904734 431086.98702014086 428698.0776610803 425820.1871167301 364069.08511032327 416534.1864762629 1.0227348447760385 1.2513002094280048 1.348816806498062 1.3723646378487173 1.2426831883443297 1.0349378298741567 1.0292026238895773 1.0222934898069798 0.8740437086094265 1.0 18.668075382118275 2.6996670880095124 3.434240544868665 0.9931720243075324 1.2627722528898477 0.636761375236432 0.09675369056318534 0.16462181970168624 4.025759295910764 0.03395766862610664 0.03301521021302867 500.803191664389 -2.6996670880095124 0.26960022858231536 IQHILCTGNLCTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQHILCTGNLCTK 13 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 ; 229.32 5.9502e-12 1455400000.0 1445940.0 1459490.0 1373600.0 1288280.0 1318450.0 1559090.0 1470490.0 1380300.0 1882530.0 1656070.0 False True 1438155.2196990368 1508068.2423696653 1566990.9404547682 1451376.1159096742 1486346.792434602 1451313.7780030933 1399356.7808826866 1483304.995021382 1418605.7061096132 1550378.194767142 0.9276157421157742 0.9727099152063143 1.0107152859500332 0.9361432718857754 0.958699495033754 0.9361030636921932 0.902590597317361 0.9567375238040975 0.9150062293817798 1.0 20.564188754605098 IQHPSNVLHFFNAPLEVTEENFFEICDELGVK ddPTM_BT-474_Trastuzumab_2h_R1 4 IQHPSNVLHFFNAPLEVTEENFFEICDELGVK 32 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;; 208.57 1.8570999999999998e-27 938964000.0 140178.7 215046.0 200918.0 192484.0 218385.0 247193.0 212703.0 162171.9 277364.0 241291.0 False True 139423.99345451762 222203.676111948 229205.5079894377 216852.45466417097 246195.0352806933 230105.12973973146 202413.74328563313 174273.99067022224 209011.35868718554 225891.60180038185 0.6172163654748228 0.9836739141294291 1.0146703381739013 0.9599845808158964 1.0898813117375359 1.018652875564064 0.8960658195009132 0.7714938903493473 0.925272816790625 1.0 17.78527110963809 0.9377857832625944 20.259396558372387 1.0000000039659103 0.9211732174981669 0.03349103112967966 0.12943845088891667 11652.297685644744 3794461.178329003 0.12893278443309442 0.032233196099979954 8.665343502958923 -0.9377857832625944 -0.07882678646774333 IQHSITAQDHQPTPDSCIISMVVGQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQHSITAQDHQPTPDSCIISMVVGQLK 27 0 P61970;H3BRV9 P61970 NUTF2 Nuclear transport factor 2 0 ; 153.1 3.6164e-08 1124390000.0 650310.0 677710.0 688940.0 658400.0 619720.0 836990.0 794870.0 518160.0 920590.0 835480.0 False True 646808.803216233 700267.1676656546 785936.7636261719 741753.3724927267 698637.6686317808 779130.8513625314 756419.101401725 556827.7303631657 693722.929774001 782158.9511095848 0.8269531433459381 0.8953003307988011 1.004829980544527 0.9483409624609703 0.8932169959068816 0.9961285366065841 0.9670912802681031 0.711911216477469 0.8869334408177176 1.0 19.57710229766618 IQIGCHTDDLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 IQIGCHTDDLTR 12 0 Q9Y4C2-2;Q9Y4C2 Q9Y4C2-2 TCAF1 TRPM8 channel-associated factor 1 0 ; 139.48 5.8862e-05 647210000.0 623340.0 715240.0 707600.0 671820.0 697000.0 743290.0 715030.0 564190.0 746770.0 716510.0 False True 619984.0066995849 739046.3310282896 807223.9294305444 756872.3431167434 785758.8185573337 691908.1118164565 680441.2672201424 606292.7226987701 562738.5397053307 670781.7183649269 0.9242708763900652 1.101768743533682 1.2034077663866631 1.128343725529175 1.1714076234407085 1.0314951837134538 1.0144004354781184 0.9038599384858717 0.8389294524559222 1.0 19.355483844341354 2.098908446863539 1.8042234024099002 0.9046595580707166 1.1098269041156787 0.5016164059021473 0.08036826282207868 0.2758298000944981 1.7207527436582748 0.046306272759938635 0.025509239480421435 125.57652093231655 -2.098908446863539 0.20516734604496212 IQIISTDSAVAS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IQIISTDSAVASPQR 15 0 P49116;P49116-2;C9J2Y1;C9JMI6;C9JKS0 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 IQIISTDSAVAS(1)PQR 160.43 1.793e-06 83059000.0 83677.0 104120.0 93438.0 91127.0 99234.0 116440.0 111670.0 96933.0 110780.0 107700.0 True False 83226.4923293886 107585.57125813098 106593.25822234462 102663.66885653831 111870.86169400065 108390.77687027697 106268.0954791735 104166.6326758005 83479.75337594785 100826.49379339106 0.8254426906873549 1.0670367203147053 1.057194931728664 1.0182211539251966 1.1095383513309627 1.0750227722128898 1.053969958500522 1.0331275913377878 0.8279545408671124 1.0 16.621515254565455 1.3121376504459696 11.241666270042229 0.9141642514267289 1.0368734229110559 0.23656142121104906 0.08259066033089413 0.5709146208809556 84.02308460089331 0.05230950894684711 0.01912358637364429 20.518124015426338 -1.3121376504459696 0.12270917148432703 IQILEGWKK ddPTM_BT-474_Trastuzumab_2h_R1 1 IQILEGWKK 9 1 P15559-2;P15559;B4DLR8;P15559-3;H3BNV2;H3BRK3 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 106.62 0.0055797 0.0 1281400.0 1260800.0 1367100.0 1248800.0 1099000.0 1015600.0 1117900.0 676290.0 1448000.0 810870.0 False True 1274501.0847769247 1302764.9658303054 1559575.796953781 1406897.9519576498 1238951.1357166574 945393.9624652464 1063822.9062072881 726758.1939310355 1091159.8022059256 759119.5823792666 1.6789200468025423 1.716152495693921 2.0544533867321517 1.8533284934477479 1.6320895475169817 1.2453821300488 1.4013904145022933 0.9573698410640354 1.4374017316032919 1.0 19.533967642444377 2.806086957112657 1.927017654926674 1.177350590024653 1.8370656476943277 0.7529527774700259 0.16864964947045266 0.16030720799738502 1.1778799203221608 0.060754098784525534 0.06269310080306668 639.8629399511357 -2.806086957112657 0.6597150576696746 IQLTFEATLQQLEAPYNSDTVLVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 IQLTFEATLQQLEAPYNSDTVLVHR 25 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 219.64 1.3119e-33 176580000.0 88124.0 93575.0 103890.0 92100.0 104070.0 95636.0 106800.0 87756.0 108540.0 88668.0 False True 87649.55017549683 96689.58730771796 118516.80897193203 103759.85055677422 117322.69762878302 89024.9084229285 101633.67598438004 94304.7983359387 81791.77136148562 83009.1323275059 1.0559024979285716 1.1648066254473894 1.4277562678806643 1.2499811484283203 1.413370967014758 1.0724712561948948 1.2243674055451212 1.1360773892186544 0.9853346140131031 1.0 16.340982444187794 1.4974334425306584 1.1976459803592567 0.9793261293100005 1.2487383071634433 0.3928352222078051 0.11600497028399866 0.4444864121909456 1.2272328856717087 0.10532347634398369 0.03656184879547923 31.43644606485009 -1.4974334425306584 0.26941217785344274 IQLVEEELDR ddPTM_BT-474_Trastuzumab_2h_R1 10 IQLVEEELDR 10 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;H0YL80;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;H0YKP3;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ;;;;;;;;; 300.71 4.0068e-32 21747498000.0 5061832.0 5813844.0 5251628.0 5176961.0 4871258.0 5678291.0 5650711.0 4928469.0 5983125.0 5553769.0 False True 5034579.6589344 6007354.282997087 5991011.574431135 5832363.731794226 5491583.832091761 5285764.108429246 5377364.521117712 5296256.383038488 4508664.013517493 5199322.707599143 0.9683145174997583 1.1554109296229977 1.15226769165047 1.121754516846945 1.0562113838530276 1.0166255117620924 1.0342432704279636 1.018643519721842 0.8671637186373896 1.0 22.30989227141865 2.2048924805443786 0.8989236875288138 0.9544594960010822 1.1035153450063424 0.4361432011695088 0.06305284554834288 0.5498142895679021 0.8404303430586869 0.04876119647995433 0.027406016294612538 160.28485200359626 -2.2048924805443786 0.14905584900526025 IQLVEEELDRAQER ddPTM_BT-474_Trastuzumab_2h_R1 6 IQLVEEELDRAQER 14 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;H0YL80;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;H0YKP3;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ;;;;; 249.6 3.4719e-18 5162840000.0 1714200.0 2663960.0 2528620.0 3154220.0 2420850.0 2577330.0 2998220.0 2169650.0 3471100.0 2955260.0 False True 1704970.937665524 2752628.2982021715 2884627.716840958 3553543.928590539 2729130.8979978813 2399165.2434822316 2853184.6442873427 2331560.3002594616 2615693.915357034 2766652.7766746227 0.6162576496913404 0.9949308859461187 1.042641758720491 1.2844199165685402 0.986437807088376 0.8671725139162232 1.0312767356793964 0.8427368695907983 0.9454362822142671 1.0 21.399710162024167 -0.5534864549322012 8.115406883782276 0.9999999988973975 0.9628692062466785 0.005158636234709579 0.16126210124576074 0.0 0.0 0.15709318431281907 0.03702721863526086 0.2795847925002688 0.5534864549322012 -0.03713079265071906 IQNGAQGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 IQNGAQGIR 9 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;E7EN40;D6R9T0;D6RFM3;D6RDU3;D6RJ04;D6RIH9;D6RAM1;D6RDL0;D6RF17;E7EQJ0 P31943;E7EQJ0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 125.81 0.0011423 64773000.0 30178.0 35775.0 40319.0 32744.0 34705.0 29078.0 33446.0 31268.0 40629.0 33734.0 False True 30015.525001091006 36965.74924855582 45995.56474096959 36889.387042682065 39124.47603734904 27067.906302249346 31828.089203872445 33601.37693568681 30616.527350707554 31581.067238869582 0.9504278235457564 1.170503484538953 1.4564284478758471 1.168085510336366 1.2388585775592513 0.8570928302554166 1.0078218371511787 1.06397217932935 0.9694582871165645 1.0 14.94677230547237 2.7571608400140173 24.806860774384408 0.9925943632122927 1.2082182918841742 0.4269272179693079 0.12502541968145076 759.2784589174412 1012637.8079197468 0.039422443849601155 0.04174259537393153 571.690321734485 -2.7571608400140173 0.21562392867188152 IQNTGDY(ph)YDLYGGEK ddPTM_BT-474_Trastuzumab_2h_R1 6 IQNTGDYYDLYGGEK 15 0 Q06124;Q06124-1;Q06124-3;A0A1W2PPU4 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 1 IQNT(0.009)GDY(0.833)Y(0.157)DLYGGEK;IQNTGDY(0.79)Y(0.21)DLYGGEK;IQNT(0.001)GDY(0.941)Y(0.058)DLYGGEK;IQNTGDY(0.5)Y(0.5)DLYGGEK;IQNTGDY(0.731)Y(0.269)DLYGGEK;IQNTGDY(0.579)Y(0.421)DLYGGEK 261.41 6.1948999999999994e-24 1034253000.0 1143341.0 1039198.0 946470.0 917267.0 912190.0 1101453.0 1109175.0 1068987.0 1485680.0 1153205.0 True False 1137185.379093128 1073787.0772215445 1079724.7491352847 1033392.9081504949 1028351.9895262766 1025312.1466514701 1055519.967790027 1148760.2381459982 1119554.0710920568 1079606.4695915263 1.053333238659997 0.9946097096174464 1.0001095580168236 0.9571940677064333 0.9525248490918713 0.9497091537802671 0.977689554036655 1.064054607398413 1.037002002697932 1.0 20.042074096684004 1.75237932124833 24.99999999999938 1.0388117073360077 0.9811406484422172 0.33341353724658684 0.03208112393983983 4.532331868520944 8211.28334429508 0.015519018708147559 0.008606137684686427 56.54306173022737 -1.75237932124833 -0.05767105889379054 IQPAGNTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 IQPAGNTSPR 10 0 P49674;H0Y5S9;H0Y682 P49674 CSNK1E Casein kinase I isoform epsilon 1 IQPAGNT(0.104)S(0.896)PR 125.36 0.0004313 483960000.0 467670.0 532240.0 449510.0 484520.0 459540.0 490610.0 497760.0 441550.0 574190.0 494750.0 True False 465152.1166830212 549955.2866541259 512797.1007890385 545860.1823210454 518059.69509302307 456695.2854717152 473681.44717214425 474500.7031454685 432688.56825180934 463174.6314232149 1.0042694161675694 1.1873605533279243 1.1071355510411844 1.1785191702830515 1.1184975599832847 0.9860110085658397 1.02268435064469 1.0244531348520785 0.9341801966188652 1.0 18.821196711956123 2.748058499453169 15.362709002646318 0.9998410070017251 1.125577937895762 0.5882716405025146 0.05230304734802314 2.610036256077583 4220.295606873621 0.015379489360946155 0.015919310552199133 559.8330059049474 -2.748058499453169 0.12573693089403692 IQPFDDDEDEDIWEDSDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 IQPFDDDEDEDIWEDSDTR 19 0 O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170;T1ECW5;A0A0A0MSJ8 O75170-6 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 0 243.78 1.4112999999999998e-28 0.0 64422.0 56724.0 55572.0 51901.0 59256.0 62806.0 52393.0 51405.0 64962.0 59739.0 False True 64075.159109957036 58612.0240496179 63396.05455951691 58471.66127847061 66801.90036217128 58464.36904942129 49858.5504293036 55241.102129300954 48952.985546202595 55926.40587486894 1.145704933253181 1.0480205751243488 1.1335621084137024 1.0455107987682326 1.1944608153728924 1.0453804090366696 0.8915028536047587 0.9877463295763846 0.8753107727990095 1.0 15.771241997677086 2.429180165922718 5.472511409070449 0.9426608127516751 1.1085264386888962 0.6956264166639206 0.054421847090957765 0.10243685003688817 6.987669700736477 0.01754014218910603 0.014729574761435884 268.6458684837351 -2.429180165922718 0.1658656259372211 IQPGSQQADFLDALIVSMDVIQHETIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQPGSQQADFLDALIVSMDVIQHETIGK 28 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 162.07 6.6748e-12 191710000.0 42623.0 38541.0 46645.0 43582.0 45493.0 54009.0 48534.0 50078.0 56823.0 50782.0 False True 42393.522503860484 39823.813886473516 53212.2105543919 49099.47673143689 51286.263891863404 50275.4849535107 46186.22500211519 53815.07465093143 42819.733039190134 47541.04928334246 0.8917245862874639 0.8376721693525404 1.1192897791811365 1.0327806700017552 1.0787785432795065 1.057517360499789 0.971502011384886 1.1319706961071907 0.9006896920593086 1.0 15.536886125050431 4.248027059672005 24.99999108452788 1.044461421296628 0.8646982999301809 0.5142414110425768 0.0664626130456838 134.1992183612365 354400.0452900194 0.014955876379123498 0.03983301701862172 17702.19252281688 -4.248027059672005 -0.179763121366447 IQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_BT-474_Trastuzumab_2h_R1 7 IQPQPPDEDGDHSDKEDEQPQVVVLK 26 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK 260.9 5.0946e-53 9697650000.0 3473025.0 2098373.0 2030753.0 1756047.0 1803202.0 2899583.0 2918110.0 2487409.0 4272980.0 2711383.0 True False 3454326.619289352 2168216.0768117355 2316665.3707784982 1978362.3701484438 2032829.0862843932 2699141.652094196 2776949.871037257 2673032.0903869737 3219961.3339985325 2538340.2156082266 1.3608603756300022 0.8541865520939227 0.9126693721091238 0.779392123240027 0.8008497339263465 1.0633490481288532 1.0940022357766788 1.053062971602675 1.2685302443695392 1.0 21.27545401694148 2.5504567060689283 7.838223192205501 1.0991287011264088 0.9261573742333137 0.17925519487245312 0.16500164276258455 0.5029896334126632 48.76148518794274 0.05333794671687203 0.05012144337151775 355.1867088788585 -2.5504567060689283 -0.17297132689309513 IQQEIAVQNPLVSER ddPTM_BT-474_Trastuzumab_2h_R1 1 IQQEIAVQNPLVSER 15 0 J3KR44;Q96FW1;F5GYN4;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 132.86 0.00010437 107500000.0 113900.0 128470.0 118340.0 126440.0 129770.0 131270.0 118590.0 131860.0 150750.0 152650.0 False True 113286.77505547964 132746.046288245 135001.24337028063 142447.29103581462 146295.4402929485 122195.6138763418 112853.34864220631 141700.06277151292 113599.68244650772 142907.74630975985 0.7927266224598123 0.9288932875654701 0.9446740772026349 0.9967779544088032 1.0237054608351717 0.8550664119457636 0.7896937118971207 0.991549208706789 0.7949161985962231 1.0 17.124724594228027 IQQFDDGGS(ph)DEEDIWEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IQQFDDGGSDEEDIWEEK 18 0 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3;E9PQP7;H0YEN2 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 IQQFDDGGS(1)DEEDIWEEK 194.62 4.0914999999999995e-15 131230000.0 387690.0 308510.0 263500.0 249660.0 274320.0 398980.0 374070.0 335890.0 455070.0 403240.0 True False 385602.7201164081 318778.5688517669 300598.50961694197 281266.93040178367 309253.0259779736 371399.45169789647 355974.80501382984 360955.8174148604 342924.0961255871 377504.87796886696 1.0214509602925157 0.8444356284001626 0.7962771533821942 0.7450683337262198 0.8192027282981966 0.9838268943600935 0.9429674311206842 0.9561619954607015 0.9083964635653483 1.0 18.526135760930227 2.7420727260891895 24.7130729256556 0.9543841397839142 0.8369491922382103 0.3878362281146248 0.0705012394368912 282.408788447731 1987180.1242659097 0.02273866254290624 0.023249206839968638 552.1698968106253 -2.7420727260891895 -0.11743494754570394 IQQYISHR ddPTM_BT-474_Trastuzumab_2h_R1 2 IQQYISHR 8 0 Q53H82 Q53H82 LACTB2 Beta-lactamase-like protein 2 0 ; 120.15 0.0015562999999999998 526800000.0 581150.0 688340.0 608080.0 622570.0 503290.0 536690.0 592770.0 524280.0 753720.0 626200.0 False True 578021.1529718353 711250.980789684 693692.3784738899 701387.2981664601 567380.9982664564 499589.88353236846 564095.4504986987 563404.4358398973 567975.8053305591 586235.3798832081 0.9859881760923246 1.2132515457040174 1.1833000911887812 1.196426081118122 0.9678382058406166 0.8522001582911944 0.9622337202013974 0.9610549877630052 0.9688528274150109 1.0 19.16112051315992 3.190794112555479 6.936495854922246 0.9460325999375039 1.152260557603446 0.6522547930222624 0.06881323355214797 0.11593843266629672 13.059097314676789 0.019580518305744525 0.023681310993725162 1551.651239049811 -3.190794112555479 0.20622795766594204 IQRPNTTQEGEEMETDMDVADVAMES(ph)SPGSSISMEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 IQRPNTTQEGEEMETDMDVADVAMES(0.594)S(0.406)PGSSISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.643)S(0.357)PGSSISMEHR 244.5 2.9668e-50 478090000.0 173357.0 190670.0 188018.0 206415.0 200137.0 217450.0 210791.0 173228.0 231951.0 235683.0 True False 172423.6651737734 197016.3356875511 214489.30011824754 232547.1178357934 225623.26064506333 202418.19332224072 200594.23403018218 186155.1529939603 174789.7840341622 220641.50916163236 0.7814652185299518 0.8929250730569718 0.9721167197108048 1.053959061100509 1.0225784871684391 0.9174075816076745 0.9091409626066126 0.8436995998680881 0.7921890341409822 1.0 17.751344704297267 -0.636128080475941 8.374839039601643 0.999999992519668 0.9135664605442955 0.0905432426331223 0.08517443232056185 0.0 0.0 0.08972340549480363 0.021148009643073618 0.23113830253626783 0.636128080475941 -0.08643353197537251 IQRPNTTQEGEEMETDMDVADVAMESS(ph)PGSSISMEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 IQRPNTTQEGEEMETDMDVADVAMES(0.107)S(0.893)PGSSISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.111)S(0.889)PGSSISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.274)S(0.72)PGS(0.005)S(0.001)ISMEHR 271.01 2.3138999999999998e-76 1561490000.0 408051.0 563374.0 549358.0 621421.0 637465.0 614005.0 594838.0 483135.0 593655.0 605750.0 True False 405854.0987547282 582125.5630232255 626702.831294664 700092.8348842692 718642.3891989251 571560.2795623008 566063.413438171 519188.9870098197 447356.6798194462 567090.5163913339 0.7156778098448383 1.0265126045971757 1.1051195764702106 1.2345345489804558 1.26724459046148 1.0078819219185855 0.9981888200851977 0.9155310695612856 0.7888629185093573 1.0 19.113219504359957 1.96898352815983 2.0315450440941896 0.8894031749251342 1.0781995608951462 0.18115321469591372 0.1488123938588856 0.5333942814816216 4.078697928990533 0.0925157558351704 0.04694597510074119 93.10725612515603 -1.96898352815983 0.18879638597001203 IQRPPEDSIQPYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 IQRPPEDSIQPYEK 14 1 A0A087WYS1;E7EUC7;Q16851;Q16851-2;C9JVG3;C9JQU9;C9JNZ1;C9JWG0;C9JTZ5;C9JUW1 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 222.16 3.6437e-12 1304300000.0 600110.0 638990.0 561160.0 504940.0 528910.0 667620.0 643600.0 602840.0 787220.0 708670.0 False True 596879.0744384892 660258.3958723876 640166.4503098408 568865.3522273359 596263.5534048205 621469.0008084358 612466.6092092418 647826.9819594938 593220.1792075614 663442.0738770883 0.8996702167988658 0.9952012720777632 0.9649168714440629 0.8574453967065194 0.8987424477321987 0.9367343816116966 0.9231651613984156 0.9764635187721191 0.8941551984197246 1.0 19.33961098166234 1.769462827171778 24.99999999761863 0.953812562785692 0.9261795097264699 0.09979129618391425 0.043324748582856294 74.64748413160174 60421.870852995424 0.020488659185661146 0.011363618061960882 58.81157730423244 -1.769462827171778 -0.027633053059222146 IQSSLSSAS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQSSLSSASPSK 12 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 IQSSLSSAS(0.995)PS(0.004)K;IQSSLSS(0.002)AS(0.996)PS(0.002)K 211.17 3.6728e-08 260820000.0 507790.0 362570.0 301450.0 300950.0 291700.0 481660.0 474270.0 405500.0 695070.0 531290.0 True False 505056.11506077327 374637.9232718071 343891.5397496284 339050.2391429014 328846.26595864317 448363.97790568124 451327.74821265845 435760.4690872774 523779.31196082314 497382.61733974656 1.0154277561247886 0.7532187700397732 0.6914024088516282 0.6816688547668057 0.6611535154112926 0.9014468183543651 0.9074055515381442 0.8761071535188433 1.0530712045432136 1.0 18.923996563181912 2.5884429029230964 5.611247850944498 0.9355929729351496 0.7524387932379658 0.44576784451480633 0.10424645023429391 0.23592944226927293 10.196826065696664 0.03519353646510802 0.03297999054776466 387.65278010861493 -2.5884429029230964 -0.18315417969718384 IQTQLNLIHPDIFPLLTSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 IQTQLNLIHPDIFPLLTSFR 20 0 Q9BQ52;G5E9D5;E7ES68;Q9BQ52-4;Q9BQ52-2;H7C2I4 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 ; 88.755 0.002176 157268000.0 105484.0 125107.0 136164.0 118546.0 117770.0 122877.0 149412.0 125281.0 146535.0 134095.0 False True 104916.08586437412 129271.11086622151 155334.70764129513 133553.91144520478 132767.31142252122 114382.80221134512 142184.3707507321 134630.1043840278 110423.41271840154 125536.94229549456 0.8357387390989488 1.029745575305931 1.2373625229429377 1.0638614339581374 1.0575955491253521 0.9111485441640411 1.132609797170717 1.072434153025086 0.8796089079378873 1.0 16.93775244916146 IQTYLQSTKPIIDLYEEMGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IQTYLQSTKPIIDLYEEMGK 20 1 P30085;P30085-3;A0A494BXC7;P30085-2 P30085 CMPK1 UMP-CMP kinase 0 ; 235.03 1.4318e-29 893640000.0 803250.0 629660.0 638870.0 565930.0 611970.0 802490.0 771640.0 743550.0 1160130.0 814930.0 False True 798925.391249465 650617.8524624927 728817.3428424136 637576.6799738901 689900.7520696297 747015.7551582666 734312.8252489428 799037.4766703955 874231.5064455529 762920.4697033246 1.0471935450364067 0.8527990508833734 0.9552992373187043 0.8357052999532484 0.9042892142321336 0.9791528538338435 0.9625024552487019 1.0473404612948918 1.1459012323860096 1.0 19.54117314624785 1.906876084633874 1.5979686031104599 1.0775899787283727 0.9179530638435299 0.4594530137636328 0.06581572249979185 0.30380332105603364 1.449036956730173 0.04314543243662543 0.019437881667246155 80.70047382247581 -1.906876084633874 -0.15963691488484277 IQVHYYEDGNVQLVSHK ddPTM_BT-474_Trastuzumab_2h_R1 1 IQVHYYEDGNVQLVSHK 17 0 P47755;P52907 P47755;P52907 CAPZA2;CAPZA1 F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1 0 73.464 0.01516 316330000.0 190340.0 168730.0 137270.0 150820.0 160360.0 189470.0 219630.0 139380.0 256650.0 177360.0 False True 189315.23058876206 174346.07605056127 156596.4228277711 169913.79653607705 180780.8954718135 176372.3848644053 209005.65783192296 149781.24335729924 193402.0464338056 166040.73295446445 1.1401734214259371 1.0500199134773425 0.9431205225450109 1.0233259846105038 1.0887743763537316 1.0622235985477988 1.2587613539940308 0.9020752961767263 1.1647867543854122 1.0 17.34117768000119 3.2425596086220136 24.773721050036073 1.0743371825279 1.0330757085578954 0.035438065973118715 0.09883965142981735 377.7656959696287 2340240.2277004025 0.02752103353669855 0.035945404700085365 1748.0731758569455 -3.2425596086220136 -0.04126147397000457 IQVLQQQADDAEER ddPTM_BT-474_Trastuzumab_2h_R1 6 IQVLQQQADDAEER 14 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;Q5VU61;P06753-3;P06753-4 P06753-2;P06753-3 TPM3 Tropomyosin alpha-3 chain 0 ;;;;; 409.33 3.042699999999998e-132 3673500000.0 1730500.0 1813790.0 1824540.0 1775680.0 1667860.0 2004930.0 2056380.0 1737880.0 1960310.0 1957480.0 False True 1721183.1802766244 1874160.9036907905 2081419.372814027 2000480.9059354265 1880252.084819275 1866333.908197563 1956905.0432655404 1867569.430375831 1477217.8673082162 1832551.9505170586 0.9392274962742468 1.0227054699115035 1.1358037474608835 1.0916366684016714 1.0260293490117744 1.0184343792660135 1.0678578813077553 1.0191085878077792 0.8060987667451479 1.0 20.805422666832495 1.397307842622264 7.59599372356683 0.9034716805671464 1.045348537873182 0.4175422829594333 0.06521728305333453 0.21039819129398074 16.467462925149192 0.04243885573442396 0.015672881295734388 24.96363606931996 -1.397307842622264 0.1418768573060355 IQVTPPGFQLVFLPFADDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 IQVTPPGFQLVFLPFADDKR 20 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 189.47 3.4936e-17 3619200000.0 2507380.0 2472490.0 2368060.0 2221910.0 2104000.0 2625590.0 2543760.0 2560550.0 3620150.0 2640000.0 False True 2493880.5446761083 2554785.334998235 2701462.264453497 2503203.578182437 2371931.928614967 2444089.143274051 2420708.610693132 2751631.243209442 2728012.540024713 2471512.939782284 1.009050167018666 1.0336928825560938 1.0930399031985116 1.0128223639415557 0.9597084807591219 0.9889040449407281 0.979444036779501 1.1133387970252073 1.1037824225452058 1.0 21.236963029154424 -0.8791097903750934 4.568671583066283 0.99999979589425 1.0339452778819305 0.03470459499211931 0.051233719507421664 1.4569849938648093e-07 3.576700716791093e-08 0.054019816383943355 0.012732496444871703 0.1320961650646675 0.8791097903750934 0.03394548198768044 IQYQLVDISQDNALRDEMR ddPTM_BT-474_Trastuzumab_2h_R1 6 IQYQLVDISQDNALRDEMR 19 1 Q5T123;Q9H299 Q5T123 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 0 ;;;;; 278.08 1.4286e-39 7959880000.0 2644100.0 3235390.0 3065460.0 3393980.0 3152600.0 3213590.0 3356130.0 2925110.0 3584880.0 3276010.0 False True 2629864.459387128 3343078.000315444 3497050.1225440293 3823657.5200073905 3554064.923075827 2991442.0872771675 3193781.170238364 3143396.5616076114 2701434.3589309263 3066932.237066728 0.8574902397916623 1.0900397341392931 1.1402436872516863 1.2467368772596061 1.1588338601426036 0.9753857783758011 1.0413602008021399 1.0249318597968162 0.8808262296380663 1.0 21.548364860373912 2.7284834396373547 24.28782816745227 0.9939934468881236 1.1087251946332692 0.235973105885535 0.10119763404360621 748.6510007835244 1804381.4597546987 0.03413695706974293 0.03255323019099657 535.1597468611777 -2.7284834396373547 0.1147317477451456 IRDDKDWK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRDDKDWK 8 2 P49916-3;P49916;P49916-4;P49916-2 P49916-3 LIG3 DNA ligase 3 0 ; 118.67 0.001036 1206030000.0 1713460.0 1433760.0 1292420.0 1250330.0 1186970.0 1903220.0 1707900.0 1546540.0 2731220.0 1791980.0 False True 1704234.9217433014 1481481.8348737776 1474381.5020839782 1408621.649800778 1338123.5937776153 1771654.8810979782 1625282.3521884142 1661950.667970997 2058147.427472975 1677614.3022087358 1.0158681405490624 0.8830884625406855 0.8788560637226431 0.8396576304494996 0.7976348270373296 1.0560561380321025 0.9688057320735631 0.9906631493203675 1.2268299243534297 1.0 20.67797963536921 2.08336988860385 1.1567891711796807 1.0825908427127127 0.8880162950459334 0.4301270524770976 0.08905837902842544 0.4717407591227264 1.1776271590669738 0.06491981000127069 0.0321746330861408 121.16296391673286 -2.08336988860385 -0.19457454766677929 IRDEMVATEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 IRDEMVATEQER 12 1 P16615-5;P16615-2;P16615-3;P16615;H7C5W9;P16615-4 P16615-5 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 0 ; 209.7 8.204800000000001e-08 475410000.0 308470.0 419210.0 446390.0 347070.0 442810.0 472960.0 352400.0 304840.0 466730.0 430380.0 False True 306809.23179423885 433163.1514322036 509237.8319085643 391009.02641411114 499199.22875950165 440265.38842808496 335353.06570126896 327588.70874615485 351710.6453615829 402912.779933144 0.7614780346385345 1.075079205737974 1.263890988995343 0.9704557559057619 1.238975911467327 1.0927064376094968 0.8323217391042167 0.8130511740047367 0.8729200533672397 1.0 18.620108041287825 2.240468966055115 24.99498210291475 0.8574048138876261 1.0798255161749084 0.2937225835743592 0.1399552747472853 54.08241189632359 708366.3077717299 0.04953803058249968 0.03950281711656067 173.96783791389794 -2.240468966055115 0.22242070228728228 IRDIDLK ddPTM_BT-474_Trastuzumab_2h_R1 6 IRDIDLK 7 1 Q13243;Q13243-3;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ;;;;; 138.78 0.0025098000000000004 8485490000.0 9387380.0 9489740.0 8118310.0 8163970.0 8107970.0 10074290.0 10238890.0 9373660.0 13380920.0 9931870.0 False True 9336839.389115963 9805600.259231038 9261297.482384512 9197527.764929293 9140471.919796705 9377878.044627808 9743595.774341838 10073170.107681016 10083371.5611418 9298009.553498294 1.0041761449473947 1.0545913297692588 0.9960516204137508 0.989193193662487 0.9830568432098118 1.0085898482540776 1.047922753604388 1.0833684402798955 1.0844656055820054 1.0 23.148490477518923 2.153876302863867 3.7303208715820095 1.065206840486181 1.005680306295444 0.39083071246530643 0.028731495852021328 0.20054460410277 5.432738279405761 0.01153267357645139 0.008240991257372739 142.5201605331695 -2.153876302863867 -0.059526534190736946 IRDLNDEINK ddPTM_BT-474_Trastuzumab_2h_R1 1 IRDLNDEINK 10 1 H0YA89;A8MVI5;Q9ULR0;Q9ULR0-2;Q9ULR0-1;D6RC18 H0YA89 ISY1 Pre-mRNA-splicing factor ISY1 homolog 0 110.84 0.0016717 285910000.0 350670.0 340920.0 307940.0 275510.0 306580.0 351810.0 365980.0 348330.0 523910.0 390910.0 False True 348782.0316830999 352267.3161095082 351295.27533753734 310389.53775132337 345621.1457579737 327490.20277166046 348276.14922063093 374324.15338390024 394799.4005343274 365961.78912511095 0.953055870988384 0.9625795003124739 0.959923373905685 0.8481473940035058 0.9444186689114054 0.8948754009389263 0.9516735341502174 1.0228503753869518 1.0787995147749092 1.0 18.48133349584898 1.7419349471729293 3.086834190993229 1.0423201177967243 0.927361361499974 0.6224593173687357 0.03725171982313049 0.14282715633504212 2.84863468379972 0.021618480539129546 0.01020602347078282 55.199474997654114 -1.7419349471729293 -0.11495875629675034 IRDPNQGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 IRDPNQGGK 9 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JHW9;F8WCF2;B1AN92;B1AN91;A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4;O43432-2 Q04637-9;A0A0A0MSA7 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 0 ;;;;; 144.47 9.0721e-05 2748290000.0 2368080.0 2320330.0 2211090.0 2131470.0 2158720.0 2369990.0 2514470.0 2195930.0 3030740.0 2482120.0 False True 2355330.5203984217 2397560.7813808974 2522392.2528611934 2401313.88345546 2433620.196264115 2206158.1696563675 2392835.4798917975 2359801.4473066013 2283854.7368353503 2323708.9765501567 1.013608220378445 1.0317818649306003 1.0855026504248426 1.0333969992320284 1.0472999075284959 0.9494124229496637 1.029748348024316 1.0155322680768866 0.98284886785867 1.0 21.147997964926134 IRDTPEDIVLEAPASGLAFHPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IRDTPEDIVLEAPASGLAFHPAR 23 1 Q9H6Y2;D6RGJ8 Q9H6Y2 WDR55 WD repeat-containing protein 55 0 ; 185.14 1.8794e-17 148648000.0 48912.0 61113.0 60063.0 62975.0 55665.0 67074.0 65621.0 52807.0 68086.0 67995.0 False True 48648.663226634075 63147.10926141138 68519.3483230451 70947.62854302775 62753.60779769581 62437.332255212656 62446.661533436345 56747.72648851266 51307.11760565786 63655.50088655167 0.7642491622732945 0.9920133905466181 1.0764089099724765 1.1145561271990032 0.9858316551390706 0.9808631050832501 0.9810096639523779 0.8914818939159679 0.8060123145853272 1.0 15.957997571741025 1.7555474391936035 3.9062379380899306 0.8853979087812528 0.9946860141690474 0.13328993328854755 0.09689588601856211 0.3471044388044746 11.048089755104865 0.05262114885300466 0.026521100927949202 56.95704364922464 -1.7555474391936035 0.10928810538779465 IRDTS(ph)QEPCGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IRDTSQEPCGR 11 1 Q12955;Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;A0A087WTF3;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 1 IRDT(0.034)S(0.966)QEPCGR;IRDT(0.008)S(0.992)QEPCGR 155.57 1.9058e-05 900880000.0 228320.0 217460.0 258990.0 234930.0 218119.0 273030.0 269090.0 242020.0 304780.0 279520.0 True False 227090.75048873655 224698.02464265432 295453.54081856465 264672.1139120845 245895.16175739872 254156.07874348777 256073.08867637473 260080.7613526583 229671.05284276395 261680.79429088847 0.8678158865426666 0.8586722050104926 1.1290608530106105 1.011431177550886 0.9396759988585857 0.9712446778228742 0.9785704349082641 0.9938855545644226 0.8776763822699881 1.0 17.997448518050646 IRDVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRDVTK 6 1 Q99613-2;Q99613;B5ME19;H3BPE4;H3BPE3;H3BTY8 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 ; 91.906 0.043193 791470000.0 1065020.0 1090200.0 1048270.0 983780.0 978080.0 1174450.0 1204970.0 1154380.0 1680510.0 1268750.0 False True 1059286.050654845 1126486.647960184 1195857.3042738226 1108326.4471307644 1102632.6904656494 1093263.035857924 1146680.9976675895 1240525.6974228658 1266370.8281803024 1187777.2887684752 0.8918221123365191 0.9483988779817137 1.006802635125079 0.9331096474153939 0.9283160243019073 0.9204276308325894 0.9654006761288595 1.0444093426883772 1.066168582405979 1.0 20.17983292186851 1.8239093656259753 3.638702023032189 1.0417819172689367 0.9412077428551346 0.6604760592881083 0.03148269326578577 0.13943051471031465 3.1851722895842833 0.01659695970268632 0.008777234939966903 66.66676255891365 -1.8239093656259753 -0.10057417441380201 IREDLPNLESSEETEQINK ddPTM_BT-474_Trastuzumab_2h_R1 6 IREDLPNLESSEETEQINK 19 1 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;;;; 334.05 2.0488e-75 4088080000.0 2097740.0 1984220.0 1702280.0 1687760.0 1737660.0 2100660.0 2079140.0 1965900.0 2726980.0 2153130.0 False True 2086446.0009208245 2050263.5632136792 1941946.2275169948 1901430.2429500697 1958940.7010822627 1955446.3186217446 1978564.0551138944 2112605.440637927 2054952.3186598874 2015715.400012665 1.0350895770840045 1.0171394052954088 0.963402982139638 0.9433029300357197 0.9718339707430694 0.9701004013807992 0.9815691516279842 1.0480673217184595 1.0194655052230965 1.0 20.942860527618954 1.7568222319332591 24.999999999885286 1.0265492106254683 0.9812728546043333 0.30054544201723665 0.027158367716138266 8.608811756354955 11797.35699352306 0.013556432149814363 0.0075178136826058225 57.124476341848485 -1.7568222319332591 -0.045276356021135 IREESGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 IREESGAR 8 1 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 ;;; 143.04 0.00055437 2018509000.0 709242.0 920761.0 852280.0 925411.0 822914.0 803961.0 936022.0 740942.0 1034449.0 930697.0 False True 705423.5198761935 951407.9732732219 972273.6158494407 1042567.9377154732 927707.2201065854 748385.0683906272 890743.0399087205 796234.8544672405 779522.9048564355 871299.1206502112 0.8096226693649912 1.0919418495031064 1.1158895869467615 1.1965671868662644 1.0647402230984457 0.8589301316316503 1.022316009275895 0.9138478802469654 0.8946673838884547 1.0 19.73280856156805 2.7903934984306757 12.708183316500904 0.9381960795603912 1.0689604993642845 0.2419597800191754 0.10293409802788729 2.4140681824293444 590.2510329037893 0.031587225476653845 0.03349724864721438 617.1539293349942 -2.7903934984306757 0.1307644198038933 IREESNTK ddPTM_BT-474_Trastuzumab_2h_R1 2 IREESNTK 8 1 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7BZC3 Q00341 HDLBP Vigilin 0 ; 150.27 0.00044863 612520000.0 464070.0 444500.0 387760.0 361330.0 403110.0 401180.0 461830.0 442330.0 633440.0 497340.0 False True 461571.4986830236 459294.9137940761 442353.2375296598 407074.34095200035 454443.6690798379 373447.37087613984 439489.5185380739 475338.91070622817 477337.199661133 465599.33540580457 0.991349135583988 0.9864595562486496 0.9500727425740759 0.874301808436227 0.9760402013541457 0.8020788314713821 0.9439221345860084 1.0209183616895303 1.0252102255367226 1.0 18.82872947338869 1.7764716382255026 5.033464709975485 1.0170646250531445 0.928733161506127 0.3317839060781004 0.05425766080743247 0.22543104115549936 11.897131169285842 0.02751319121717907 0.014851558696711663 59.76840114212291 -1.7764716382255026 -0.0883314635470176 IREEYPDR ddPTM_BT-474_Trastuzumab_2h_R1 17 IREEYPDR 8 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1 Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1 TUBB;TUBB1;TUBB4B;TUBB2A;TUBB8;TUBB2B Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain 0 ;;;;;;;;;;;;;;;; 182.39 0.00020867 172708617000.0 20732356.0 24813897.0 23953149.0 23351045.0 20612701.2 21890749.1 23301305.0 21128240.5 25099102.4 22673127.0 False True 20620735.298877317 25639812.56132753 27325544.17469658 26307284.902763408 23237606.516768068 20377493.139997553 22174131.857520733 22704937.093141377 18913764.92426123 21226108.623419352 0.9714797782635434 1.2079374988705378 1.2873553348609341 1.2393833165320682 1.0947652689918572 0.9600202044341987 1.0446630727713981 1.0696702582634667 0.8910613461853838 1.0 24.33933657081627 3.003322629217757 4.822104577954758 1.0085710260188225 1.1858935695228643 0.4754607376747846 0.09002206883151476 0.17257097406297583 11.118128229030138 0.027767753267414524 0.03189596717209513 1007.6799774036132 -3.003322629217757 0.17732254350404175 IREHLEK ddPTM_BT-474_Trastuzumab_2h_R1 6 IREHLEK 7 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;; 157.68 0.0013313 6723330000.0 4787680.0 5048020.0 4598930.0 4417980.0 4785390.0 6063920.0 5732610.0 6221220.0 7443400.0 7034760.0 False True 4761903.662841251 5216040.294107474 5246419.369383848 4977295.815014309 5394781.051271271 5644735.483332274 5455301.753603151 6685479.027115061 5609073.806449995 6585795.594038954 0.7230567051232847 0.7920136936574078 0.7966265114776073 0.7557622680423672 0.8191540375401699 0.8571076041961477 0.8283436185813216 1.0151361261752998 0.851692665883371 1.0 22.650926304451684 2.2178044915970188 0.6813934060962585 0.9793192707584611 0.7597071097148141 0.6881212417300435 0.05059450198674234 0.3854021906512365 0.3478906292116093 0.04186549511288796 0.02740634361725358 165.12182941314262 -2.2178044915970188 -0.219612161043647 IRELESQISELQEDLESER ddPTM_BT-474_Trastuzumab_2h_R1 8 IRELESQISELQEDLESER 19 1 P35579 P35579 MYH9 Myosin-9 0 ;;;;;;; 305.83 1.5950999999999993e-50 1518883000.0 610054.0 599963.0 637732.0 592202.0 543120.0 628728.0 668555.0 642740.0 669369.0 680648.0 False True 606769.5370473709 619932.4057697083 727519.1223340854 667174.7124801605 612283.1126755516 585265.5132265149 636214.4405218844 690704.5225675888 504411.97903506726 637208.4619079301 0.9522308213399757 0.9728879053387116 1.141728595624338 1.0470273895649556 0.9608835244313187 0.9184835861628586 0.9984400373732178 1.0839537825650978 0.791596485590848 1.0 19.281405899918283 3.236701910202302 24.948078375575815 0.9720954664809727 1.0325886205369679 0.12777132576824635 0.08467961542422305 119.16728614611164 1599497.5406801896 0.024916095146051913 0.03123699820454017 1724.6537227802733 -3.236701910202302 0.0604931540559952 IREPLTAQQLETTTER ddPTM_BT-474_Trastuzumab_2h_R1 1 IREPLTAQQLETTTER 16 1 Q6P1N0-2;Q6P1N0;K7EMP1 Q6P1N0-2 CC2D1A Coiled-coil and C2 domain-containing protein 1A 0 212.32 4.3928e-12 418540000.0 71722.0 81751.0 67938.0 57894.0 70756.0 63250.0 72424.0 64754.0 76085.0 76148.0 False True 71335.85672106325 84472.03261547703 77503.07987231809 65223.37446399443 79766.35719633094 58877.67637448485 68920.57443345262 69586.27229414944 57334.87123676646 71288.16944641732 1.000668936725634 1.1849376028510477 1.0871801096053129 0.9149256457345085 1.118928397457114 0.8259109026321593 0.9667883881526196 0.9761265134806543 0.8042690909585125 1.0 16.1213750551366 3.392888447850017 1.0442867704719716 0.9279300183131604 1.1013986029197487 0.3255025127223642 0.09436785731062974 0.6080380667518595 1.3845994692117993 0.03576053110873884 0.06975345369163692 2471.0893436410634 -3.392888447850017 0.17346858460658832 IREYFGEFGEIEAIELPMDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IREYFGEFGEIEAIELPMDPK 21 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 101.6 0.00047267 179030000.0 270870.0 295990.0 238200.0 308000.0 252060.0 341850.0 344820.0 301490.0 527620.0 399300.0 False True 269411.6660164859 305841.8482202663 271736.48952848424 346992.76842004823 284158.3469233311 318218.7141283422 328139.7392596809 323988.7147351997 397595.1207457805 373816.3321420713 0.7207059800535796 0.8181607434530954 0.7269251398711201 0.9282440026942734 0.7601549811775877 0.8512702275603121 0.8778100661877163 0.8667056168430483 1.0636108873773658 1.0 18.511970076654297 1.5273147106099818 1.130176208802211 1.0315103833073114 0.7998301232715569 0.6323511357023077 0.06501312243375516 0.28431899590731113 0.6997019978809826 0.0552760533511648 0.01973193808115039 33.6755510172395 -1.5273147106099818 -0.23168026003575448 IREYFGGFGEVESIELPMDNK ddPTM_BT-474_Trastuzumab_2h_R1 1 IREYFGGFGEVESIELPMDNK 21 1 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 152.13 5.0541e-08 62871000.0 124750.0 129160.0 107950.0 91808.0 112920.0 141800.0 138620.0 141870.0 211760.0 165560.0 False True 124078.35986102809 133459.01252113128 123148.4216817795 103430.88338671377 127299.69267072335 131997.69976129557 131914.42102017565 152457.05980126304 159574.58543862347 154993.81905695298 0.8005374705647784 0.8610602237763516 0.7945376301523882 0.6673226327090357 0.8213210916749311 0.8516320235505171 0.8510947199236588 0.9836331585922288 1.0295545100413797 1.0 17.241851158364177 1.8552772772430792 1.4167964340272674 1.023909462612199 0.7909625048971767 0.778934540070277 0.04928056961078347 0.1937619744314137 0.7286612806344568 0.039302244019525645 0.016633640921819758 71.66007811472304 -1.8552772772430792 -0.23294695771502227 IRFQESEERPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRFQESEERPK 11 2 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 85.81299999999997 0.0084008 284320000.0 93179.0 150299.0 116904.0 130607.0 136504.0 142851.0 156175.0 129672.0 178465.0 146976.0 False True 92677.33461716022 155301.6113573357 133363.06705221636 147141.83280856276 153886.97527740375 132976.0466050836 148620.2186035632 139348.78310107405 134484.692058481 137595.8658475157 0.6735473776506165 1.1286793422226913 0.969237456596333 1.0693768442986937 1.118398247865542 0.966424723490226 1.0801212499237784 1.012739606984275 0.9773890460307688 1.0 17.070077598467467 4.7475817247834975 24.98413917420034 1.0365461095696558 0.6735471890934445 0.7815440372232927 0.05745812058210452 490.0741553650627 1357241.2581525152 0.012719918227737891 0.154904576462658 55921.875048593334 -4.7475817247834975 -0.3629989204762113 IRGDGSGFS(ph)L ddPTM_BT-474_Trastuzumab_2h_R1 1 IRGDGSGFSL 10 1 R4GMM2;Q9NPB6-2;Q9NPB6 R4GMM2 PARD6A Partitioning defective 6 homolog alpha 1 IRGDGSGFS(1)L 79.889 0.067481 79425000.0 145790.0 177660.0 162750.0 154770.0 148020.0 184050.0 174180.0 164410.0 202170.0 178610.0 True False 145005.08283879183 183573.3057022622 185663.7853516406 174363.86613107432 166869.46961672397 171327.05670709768 165754.24796778374 176679.10905706364 152347.91243920723 167210.9568842856 0.8671984512303172 1.0978545253424976 1.1103565747795154 1.0427777544012184 0.9979577458683049 1.0246162087671116 0.9912881969959065 1.0566239937214774 0.9111120184823533 1.0 17.351309860878942 1.2464609804378608 24.99952280907971 0.9555560017988397 1.028482858574522 0.13865495616436896 0.06693682514582033 279.1869279675132 883465.9820327512 0.044863453328987876 0.01572131669968954 17.638472829772855 -1.2464609804378608 0.07292685677568234 IRIDS(ph)LSAQLSQLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRIDSLSAQLSQLQK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 IRIDS(0.966)LS(0.034)AQLSQLQK;IRIDS(0.961)LS(0.039)AQLSQLQK 232.1 6.3863e-14 701420000.0 935480.0 938680.0 961400.0 1033220.0 908630.0 1095190.0 1162520.0 1024910.0 1573640.0 1209310.0 True False 930443.479621599 969923.3963559574 1096756.7633613974 1164025.546061566 1024338.6446280497 1019482.0930999542 1106284.4663423372 1101393.9885875264 1185837.507695672 1132130.8004576217 0.8218515733742973 0.8567237954871486 0.9687544609846092 1.0281723150638178 0.9047882490380078 0.900498504844022 0.9771701873097728 0.9728504764134399 1.0474386062249534 1.0 20.110609218545324 4.291431892242487 4.040310863266649 0.971453972946338 0.8306692015116082 0.6049986530897578 0.04412301931126948 0.1452794368693285 4.78205666737973 0.011426191967290769 0.033500997331135006 19562.839517846667 -4.291431892242487 -0.14078477143472978 IRIDSLSAQLSQLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRIDSLSAQLSQLQK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 150.59 2.877e-06 869260000.0 555090.0 758760.0 749200.0 721150.0 695790.0 765200.0 861290.0 679360.0 1328760.0 958450.0 False True 552101.457116296 784014.8679198935 854680.8478368624 812447.5160588248 784394.7322295647 712303.5250870483 819626.112252685 730057.2929201811 1001304.9024717854 897280.9004296717 0.6153050364182686 0.8737674763214733 0.9525231701996444 0.9054550427516916 0.8741908268123724 0.793846748265738 0.9134554316939089 0.8136329354281207 1.1159324822274728 1.0 19.77520017665651 4.732208462853529 4.15790675076174 0.903400775265259 0.5933680382579816 0.5086582250848071 0.08830851770664695 0.17308648527605108 6.689900642932986 0.02029530070993725 0.1589077505288888 53976.96516425556 -4.732208462853529 -0.3100327370072774 IRIEDPPR ddPTM_BT-474_Trastuzumab_2h_R1 6 IRIEDPPR 8 1 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ;;;;; 124.74 0.0011781 2079966000.0 2865431.0 3716390.0 3090762.0 3277985.0 3397680.0 3486178.0 3668420.0 3218854.0 4391120.0 3748770.0 False True 2850003.837875311 3840087.7945448067 3525914.4242150993 3692977.5649006246 3830354.408372862 3245186.720440299 3490964.509874716 3459061.2304894226 3308987.31399343 3509520.2891165325 0.8120778918741499 1.0941916496261344 1.0046713321901592 1.0522741744371777 1.0914182260895533 0.9246809971448332 0.9947127305975804 0.9856222348155131 0.9428602889845143 1.0 21.74284241358338 -0.09219913523544015 8.100225836109981 0.999999994529835 0.9953024903641198 0.0 0.07984593721881654 0.0 0.0 0.07206353632346038 0.016985538403533975 0.8087249928555816 0.09219913523544015 -0.004697504165715238 IRLDETDDPDDYGDR ddPTM_BT-474_Trastuzumab_2h_R1 6 IRLDETDDPDDYGDR 15 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;;;; 235.92 9.8428e-18 21030340000.0 7281270.0 8356040.0 7587130.0 7374930.0 7560710.0 8487090.0 8207310.0 7586820.0 8726240.0 8257250.0 False True 7242068.45134514 8634165.740067141 8655331.95548383 8308595.381831401 8523521.602660868 7900397.444760898 7810291.060331109 8152987.033491341 6575775.0776253 7730265.235612603 0.9368460499882479 1.1169300763821601 1.1196681733001257 1.0748137519983771 1.1026169662838745 1.022008586246758 1.0103522741173012 1.054683996602251 0.850653228214127 1.0 22.882086485096316 1.2631989712501592 23.72759164139891 0.9253267621103298 1.0577298110382454 0.4069727491324985 0.06240415134759467 99.91017320322773 96217.64460736874 0.040326471486092544 0.014706937751927612 18.33154086319554 -1.2631989712501592 0.13240304892791555 IRLEETLEQLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRLEETLEQLAK 12 1 P22059 P22059 OSBP Oxysterol-binding protein 1 0 ; 129.37 0.00021475 868490000.0 2003560.0 2011980.0 1748930.0 1743350.0 1800720.0 2189400.0 2082000.0 2042960.0 2955200.0 2355500.0 False True 1992773.0555764406 2078947.538032407 1995164.1420279245 1964057.931250298 2030031.0182963584 2038051.931293237 1981285.7059876358 2195416.0491406783 2226930.5576512082 2205169.9733549925 0.9036822919117629 0.9427606774771434 0.904766601275837 0.890660563576484 0.9205780247441997 0.9242153466258665 0.8984730111181705 0.995576792568296 1.0098679850347811 1.0 21.072458431576532 1.6721233331484775 5.01111989192349 1.0041005677809731 0.9130599475881298 0.8917309315852653 0.014310394541557529 0.04550121761038405 2.5870514732784873 0.007783341557718949 0.003766456645053252 47.002757046583476 -1.6721233331484775 -0.09104062019284331 IRPDNELFEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IRPDNELFEVR 11 1 Q92805 Q92805 GOLGA1 Golgin subfamily A member 1 0 ; 142.91 3.414e-05 450910000.0 266980.0 336860.0 338570.0 313130.0 325990.0 312000.0 311900.0 289670.0 374610.0 330220.0 False True 265542.6093442668 348072.1814638302 386237.7130968052 352772.2258940575 367502.8942058903 290432.1743690001 296812.20542629354 311286.6463144555 282292.3850168242 309145.07688443427 0.8589579107013661 1.1259185653923507 1.2493736500328938 1.1411219271201012 1.1887716211093717 0.9394688645731547 0.9601065247991931 1.0069273929625662 0.913138866262301 1.0 18.23792450539187 2.7298398659444634 24.86733613904562 0.9675779511739859 1.122713620907883 0.36194841274631595 0.0983523093989934 660.7377574067208 1884097.4714581533 0.03224486044373747 0.030809238894085947 536.8338172788386 -2.7298398659444634 0.15513566973389703 IRPLT(ph)PVSDSGDVTTTVHMDAATPELPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IRPLTPVSDSGDVTTTVHMDAATPELPK 28 1 E7EX78;O14901-2;O14901;C9JM94;B5MCC4 E7EX78 KLF11 Krueppel-like factor 11 1 IRPLT(0.979)PVS(0.02)DSGDVTTTVHMDAATPELPK 138.02 5.3897e-06 78905000.0 178200.0 169420.0 158180.0 153110.0 159870.0 199770.0 189450.0 189650.0 279490.0 200270.0 True False 177240.5909998814 175059.04228344714 180450.36907479275 172493.71030127798 180228.49687627133 185960.37010799744 180285.5797307191 203802.64602318677 210613.434474126 187488.59714022675 0.9453406431289224 0.933705009017251 0.9624605006769027 0.9200224063347503 0.9612771103166053 0.991848960120565 0.9615815707228298 1.087013552460251 1.12333996673197 1.0 17.516443329514672 1.7618483595620458 5.023994868691136 1.0788856721006792 0.9531172205261177 0.7093923833143023 0.03397835603260064 0.08888500320328685 5.020893945715776 0.016540127950693945 0.008738708162390904 57.7894231727967 -1.7618483595620458 -0.1257684515745615 IRPWINK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRPWINK 7 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 105.2 0.007277899999999999 831150000.0 749760.0 870470.0 748290.0 759180.0 904330.0 1042150.0 979070.0 937960.0 1271130.0 1109700.0 False True 745723.3754661668 899443.0677397738 853642.7277467223 855292.1101595216 1019491.0651161467 970108.6234572239 931708.6436893912 1007955.3380643736 957877.0437693489 1038877.9959380322 0.7178161231462336 0.8657831538030039 0.8216968027857249 0.8232844602577748 0.9813385874975815 0.9338041880281481 0.8968412530945227 0.9702345626776534 0.9220303515086531 1.0 19.9865948058664 6.818324489046232 0.28775366453394524 0.9773464941799975 3.204973321882647e-20 0.7313313660285914 0.043091529513709086 13.939999081896174 0.362748955843499 0.04625617743701722 6.0432207067650126 6581493.989951332 -6.818324489046232 -0.9773464941799975 IRQEVGPPLPPLLAPLIAT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 IRQEVGPPLPPLLAPLIATPPR 22 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 IRQEVGPPLPPLLAPLIAT(1)PPR 63.776 0.047553 135340000.0 78079.0 88637.0 74663.0 77761.0 95781.0 89362.0 102140.0 78724.0 103560.0 101420.0 True False 77658.63133939245 91587.228962802 85174.90141757029 87605.53462698498 107978.14261153515 83184.61527552125 97199.09798730885 84598.78463237207 78039.02563290442 94947.28876996959 0.8179131004734357 0.9646113138068843 0.89707565661959 0.9226754735380428 1.1372430325328786 0.8761136452990673 1.0237164140915573 0.8910079026830454 0.8219194738879896 1.0 16.53483918420052 4.743559856933786 23.78872887743607 0.9470379697802808 0.8179129929555297 0.17488236819024117 0.08490311010955537 478.4991760433049 2276767.3255988494 0.019685276138635098 0.16089502955807844 55406.39029124516 -4.743559856933786 -0.1291249768247511 IRQNEINNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IRQNEINNPK 10 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 60.691 0.087963 151500000.0 462320.0 479630.0 451850.0 454380.0 480200.0 499810.0 535690.0 490210.0 710290.0 590590.0 False True 459830.9204885809 495594.19460754236 515466.55244939396 511904.4614113686 541350.6236316096 465259.3111261863 509776.628165474 526791.959435942 535248.5468983749 552898.0405704624 0.8316739918523535 0.896357299613875 0.9322994740902901 0.9258568919564304 0.9791147443262079 0.8414920599938223 0.922008382665822 0.9527831910788019 0.9680782126594675 1.0 19.07665393333172 7.999999999588505 0.07606546163627595 1.0719476893275943 0.5511491340055669 0.4484306867747663 0.03912133996592897 219.55181790959398 1.2227005712672698 1.3358022801796878 12.090147845697894 99999999.90524982 -7.999999999588505 -0.5207985553220275 IRQPS(ph)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 40 2 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 IRQPS(0.987)VDLT(0.013)DDDQTSSVPHSAISDIMSSDQETYSCKPHGR;IRQPS(0.883)VDLT(0.117)DDDQTSSVPHSAISDIMSSDQETYSCKPHGR 180.11 2.896e-24 445580000.0 79600.0 100961.0 82162.0 101120.0 88471.0 101753.0 118288.0 98720.0 136045.0 121746.0 True False 79171.44244439137 104321.42585278665 93729.69543509382 113921.78163193286 99737.25744129968 94719.05461079783 112565.95753595822 106086.98769000273 102518.53265960305 113976.06604800551 0.6946321731357634 0.9152923896219367 0.8223629634279171 0.9995237209183041 0.8750719418521727 0.8310433751144136 0.9876280296298929 0.9307830263708173 0.8994742160729019 1.0 16.798371377607275 5.396276571084158 1.2703642760079685 0.921857745758128 7.362099610081636e-18 0.5402474015446523 0.061456221076676004 4.917254411434269 2.067866723031167 0.016170945543998543 8.901301480720424 249044.27982302313 -5.396276571084158 -0.921857745758128 IRS(ph)EDEEDLGNARPSAPSTLFDFLESK ddPTM_BT-474_Trastuzumab_2h_R1 1 IRSEDEEDLGNARPSAPSTLFDFLESK 27 2 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 IRS(0.996)EDEEDLGNARPS(0.003)APS(0.001)T(0.001)LFDFLESK 109.06 0.00082887 89104000.0 101460.0 82968.0 72317.0 73172.0 75913.0 92786.0 75268.0 68684.0 115510.0 88906.0 True False 100913.7506332657 85729.53972478492 82498.6050093678 82435.56769750586 85580.07057839721 86371.92221475011 71626.99928831756 73809.54885028502 87044.10825470055 83231.94296374392 1.212440164676007 1.030007670998729 0.9911892246142139 0.9904318553925269 1.028211856302287 1.0377256512247224 0.8605710348431791 0.8867935340934752 1.0458017097187942 1.0 16.34484969530939 7.9999999768564996 0.7415466837576078 0.9590455813695435 42.23056068593383 0.5718705762950169 0.05928036615697677 268.50251528585187 1.1901148193278446 0.022927589068653824 18492.35940216148 99999994.67101222 -7.9999999768564996 41.27151510456429 IRS(ph)IEALLEAGQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 IRSIEALLEAGQAR 14 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 IRS(1)IEALLEAGQAR;IRS(1)IEALLEAGQAR;IRS(1)IEALLEAGQAR;IRS(1)IEALLEAGQAR 186.9 6.1189e-07 202855000.0 117223.0 134906.0 133632.0 139288.0 133399.0 150660.0 156083.0 118297.0 184646.0 148381.0 True False 116591.88439269977 139396.2646576009 152446.22404983384 156921.84651847943 150386.5719321803 140245.22881549216 148532.66899503756 127124.92283999451 139142.46742963747 138911.1975446348 0.8393267530159805 1.0034919223326848 1.097436540354135 1.1296558469885587 1.0826094266724482 1.009603482616502 1.0692634691836933 0.9151524505369473 1.0016648757558104 1.0 17.083803373187287 -0.7146486583038875 7.4269950484627625 1.0000087630759655 1.018310773651459 0.0031003117185416373 0.08284837162600311 0.0 0.0 0.0838690341611439 0.01976812092897036 0.19290849004987967 0.7146486583038875 0.01830201057549341 IRS(ph)SVEKENQK ddPTM_BT-474_Trastuzumab_2h_R1 1 IRSSVEKENQK 11 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 IRS(0.913)S(0.087)VEKENQK 145.69 2.8448000000000006e-05 1572900000.0 846900.0 664130.0 563950.0 634040.0 639310.0 843570.0 882560.0 832720.0 1271700.0 882860.0 True False 842340.3844994366 686235.1655749368 643349.2580587274 714309.3989904148 720722.3390127532 785255.9914501853 839867.201093393 894861.7948664807 958306.5749069576 826515.1189455262 1.0191469764934251 0.8302753934500804 0.7783877672794624 0.8642423866386567 0.8720013977872006 0.9500806137122094 1.0161546738127447 1.082692590074035 1.1594543801322978 1.0 19.656681684551177 2.2829528342307692 1.5732833370670334 1.0894875445363614 0.8632015501876629 0.6435105700641603 0.06803278040117683 0.227028915529879 1.1216437937171964 0.03641470523657984 0.023054128691789643 191.84603784254264 -2.2829528342307692 -0.22628599434869856 IRSS(ph)VEK ddPTM_BT-474_Trastuzumab_2h_R1 8 IRSSVEK 7 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 IRS(0.003)S(0.997)VEK;IRS(0.013)S(0.987)VEK;IRS(0.056)S(0.944)VEK;IRS(0.01)S(0.99)VEK;IRS(0.022)S(0.978)VEK;IRS(0.416)S(0.584)VEK;IRS(0.007)S(0.993)VEK;IRS(0.034)S(0.966)VEK 115.06 0.0034916 35097940000.0 17421400.0 15184530.0 13234890.0 11834140.0 12239000.0 14653860.0 15771960.0 14961070.0 19787270.0 14788780.0 True False 17327605.118099496 15689937.901807794 15098247.472273907 13332340.910618285 13797564.103763571 13640873.149676036 15009010.040061839 16077541.014174111 14910962.444333717 13844947.399088448 1.2515471975892336 1.133260925414626 1.0905240039603168 0.9629751942211126 0.996577574911697 0.9852600198809099 1.0840785166905027 1.1612569228852871 1.0769966843872196 1.0 23.722856236716062 4.578110969001215 1.8929657881382163 1.0505395543424205 1.2768256422510176 0.5657914158498145 0.056953267277319745 0.5204168774193041 2.5115521921050576 0.017748615797795464 0.18504233448988713 37853.929504404674 -4.578110969001215 0.22628608790859706 IRSS(ph)VEKENQK ddPTM_BT-474_Trastuzumab_2h_R1 7 IRSSVEKENQK 11 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 IRS(0.195)S(0.805)VEKENQK;IRS(0.137)S(0.863)VEKENQK;IRS(0.243)S(0.757)VEKENQK;IRS(0.078)S(0.922)VEKENQK;IRS(0.027)S(0.973)VEKENQK;IRS(0.097)S(0.903)VEKENQK;IRS(0.112)S(0.888)VEKENQK 238.65 1.0071e-15 24517520000.0 4883350.0 4221180.0 4000730.0 4235180.0 4239040.0 5692390.0 6078500.0 5611740.0 9388780.0 5934960.0 True False 4857058.5861911895 4361679.424542805 4563998.009031456 4771353.353757216 4778856.617241441 5298888.477744725 5784459.732875046 6030516.53463832 7075040.97220645 5556185.77162511 0.8741713804811398 0.7850132453845351 0.8214264599177625 0.8587461884597244 0.8600966226951209 0.9536917402592302 1.0410846524275177 1.0853698530807898 1.2733629261170465 1.0 22.405663406102395 2.317995248975876 1.2418313319866852 1.1346989261231055 0.8285255535238887 0.7766758948310455 0.06671966618528176 0.19350163120811065 0.5873520917377759 0.03858891010150723 0.023805080206046433 207.96739361006388 -2.317995248975876 -0.30617337259921684 IRT(ph)SPTFR ddPTM_BT-474_Trastuzumab_2h_R1 1 IRTSPTFR 8 1 P62750;H7BY10;K7EJV9;K7ERT8;A8MUS3 P62750 RPL23A 60S ribosomal protein L23a 1 IRT(0.688)S(0.312)PTFR 104.82 0.0072848 1967400000.0 175270.0 148470.0 187070.0 125100.0 248530.0 180700.0 210520.0 147000.0 183390.0 103470.0 True False 174326.36579432787 153411.73419798983 213407.82995841122 140937.64717320798 280178.8223472797 168208.63432204587 200336.3433355027 157969.88645087503 138195.99180009982 96866.4560148762 1.799656691967298 1.5837446780795794 2.203113840828834 1.4549685512553858 2.8924235888660097 1.736500345343628 2.0681704645490093 1.630800722456646 1.4266650963144194 1.0 16.563709539315894 1.173629268129991 1.4276205738354022 1.0174875192492956 1.9672252450289118 0.40153163112910895 0.379106954056551 0.3676564214078984 1.459073097451868 0.33602015070498953 0.10240939802838799 14.915206418031989 -1.173629268129991 0.9497377257796162 IRTPS(ph)GEFLER ddPTM_BT-474_Trastuzumab_2h_R1 1 IRTPSGEFLER 11 1 Q9UNN5;B3KT28;B1ANM7;Q9UNN5-2 Q9UNN5 FAF1 FAS-associated factor 1 1 IRT(0.001)PS(0.999)GEFLER 165.93 1.273e-05 182060000.0 31069.0 42726.0 39076.0 39722.0 39826.0 42242.0 48314.0 35738.0 50399.0 43071.0 True False 30901.727956090413 44148.10908158757 44577.56114531928 44750.80112721158 44897.60503280398 39321.90996697216 45976.86724259679 38404.951033886886 37978.84176200031 40322.17190506169 0.7663706218218688 1.094884203795719 1.1055347229379628 1.109831118040394 1.1134718918047153 0.9751932524754708 1.1402378659276848 0.9524524404169278 0.9418848233528011 1.0 15.299285729505135 -0.7291899660716592 7.854446813828483 0.9999999867736097 1.0302773864085761 0.0 0.11033138546355567 0.0 0.0 0.10270775684936065 0.024208450449547336 0.1865563490532735 0.7291899660716592 0.03027739963496645 IRTS(ph)PTFR ddPTM_BT-474_Trastuzumab_2h_R1 4 IRTSPTFR 8 1 P62750;H7BY10;K7EJV9;K7ERT8;A8MUS3 P62750 RPL23A 60S ribosomal protein L23a 1 IRT(0.041)S(0.958)PT(0.001)FR;IRT(0.023)S(0.977)PTFR;IRT(0.035)S(0.964)PT(0.001)FR;IRT(0.03)S(0.97)PTFR 121.61 0.00086359 3866850000.0 226581.0 317110.0 228087.0 256728.0 219093.0 269684.0 263548.0 217354.0 293588.0 290284.0 True False 225361.1130715154 327664.8146529572 260199.667032256 289229.7384770851 246993.19488404898 251041.37984785074 250799.17638887055 233574.05918124833 221237.17127764746 271757.826595364 0.8292718406490225 1.2057235618859887 0.9574688990270825 1.0642922123002403 0.9088724250500114 0.9237687208237826 0.9228774734142247 0.859493403032805 0.814096778920227 1.0 18.05196205974541 3.1770911994897455 7.087930682278278 0.896771892112473 1.0236388209353102 0.2232421414671728 0.0986724133089764 0.2733256833852722 25.720395032452082 0.026660007124392357 0.032099719329587856 1503.4576509091455 -3.1770911994897455 0.12686692882283723 IRVDVADQAQDKDRDDR ddPTM_BT-474_Trastuzumab_2h_R1 5 IRVDVADQAQDKDRDDR 17 3 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;;;; 244.32 7.2687e-21 6199400000.0 3629690.0 3707710.0 3584580.0 3866530.0 3846630.0 4529620.0 4609200.0 4248610.0 7232200.0 4916420.0 False True 3610148.1523364726 3831118.885991979 4089257.706272102 4356032.301555751 4336475.529737733 4216498.030978557 4386235.387146114 4565662.852204444 5449921.216514975 4602649.866441078 0.7843629772185907 0.83237243700102 0.8884572637357819 0.9464183520272813 0.9421693275771248 0.9161022787594516 0.9529804600447911 0.9919639739476352 1.1840833812390417 1.0 22.13403326711908 4.436971295104736 0.30388637620627235 1.0613223006498345 0.6172927766006608 0.6634913140168414 0.05943463175489503 3.984463725138761 0.3468005125099711 0.06915584228804125 0.6510068398902926 27350.87943425801 -4.436971295104736 -0.4440295240491736 IRYESLTDPSK ddPTM_BT-474_Trastuzumab_2h_R1 5 IRYESLTDPSK 11 1 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2 0 ;;;; 155.86 2.8578000000000007e-05 7230990000.0 10766460.0 9672190.0 8775590.0 7822670.0 8059830.0 10906550.0 10517510.0 10836430.0 15702180.0 10649060.0 False True 10708494.575626153 9994122.997187676 10011116.793204328 8813019.219923574 9086201.576144839 10152605.86975712 10008737.860510094 11645099.432876563 11832588.1374322 9969427.873681035 1.074133311490846 1.0024770853272167 1.004181676225709 0.8840045117523402 0.9114065211437173 1.0183739727491954 1.0039430534356777 1.1680810153227796 1.186887380836552 1.0 23.249079282825594 1.8413752439058955 4.702651183593435 1.1333137363767245 0.9792765476856222 0.43496538515612826 0.06886410696476004 0.18690911231589963 6.208146988593768 0.033269938435977225 0.01890762416559564 69.40252063387231 -1.8413752439058955 -0.15403718869110228 IRYESLTDPSKLDSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IRYESLTDPSKLDSGK 16 2 P08238;Q58FF7;P07900;P07900-2;G3V2J8;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2 0 ; 190.55 4.7173e-10 4987700000.0 6418600.0 6636600.0 6190700.0 5839400.0 5812500.0 8167500.0 8740100.0 7813300.0 13167300.0 8837900.0 False True 6384042.970773499 6857495.219090583 7062296.749470986 6578667.441272834 6552687.421613345 7602899.949226961 8317307.972575658 8396368.121133495 9922395.34778045 8273857.655493143 0.7715920718717023 0.828814744539119 0.8535675912652688 0.7951148926166447 0.7919748797301237 0.9189063029358835 1.0052515185650635 1.014806934170425 1.1992465619943093 1.0 22.980128706800457 2.2472922107345172 1.3929961273532891 1.0801314813636627 0.8088845176526803 0.8212031189674661 0.054697867765028586 0.16725452619681855 0.635473233452677 0.031740219516127856 0.018731722179634223 176.72264815615318 -2.2472922107345172 -0.27124696371098234 IS(ph)APNVDFNLEGPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISAPNVDFNLEGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK 222.51 4.0543e-12 1714070000.0 921340.0 761780.0 815110.0 759640.0 802920.0 1672780.0 1486140.0 1290010.0 2301380.0 1209870.0 True False 916379.6078104979 787135.3867942665 929870.4029368717 855810.3461123555 905167.1027203073 1557144.655900564 1414249.7305938827 1386277.0967380495 1734235.735912066 1132655.0607781815 0.8090544416769803 0.6949471326720348 0.8209652127435971 0.7555789716989194 0.7991551303345782 1.374773935880126 1.2486146749940215 1.2239181589720873 1.5311243431169357 1.0 20.11127713844986 2.747386546453282 23.568172241522625 1.281556153384512 0.7728107017341564 0.7905709155499021 0.12858505213095703 119.67711875106457 319577.32489052135 0.036914335142945016 0.03856863560435309 558.967485816576 -2.747386546453282 -0.5087454516503555 IS(ph)ASSATR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISASSATR 8 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 F5GZ78;P49023-3;P49023-4 PXN Paxillin 1 IS(0.99)AS(0.01)SATR;IS(0.95)AS(0.039)S(0.012)ATR 123.96 0.0013903 216716000.0 293690.0 301490.0 270200.0 306220.0 281330.0 319900.0 341780.0 274450.0 372550.0 298390.0 True False 292108.80567202665 311524.9123954465 308241.811379498 344987.42060255597 317155.7079264485 297786.0659636002 325246.79567360913 294930.85262886196 280740.0444142387 279346.49473546824 1.045686311362682 1.1151917717473068 1.1034389805799878 1.2349803097735215 1.135348801232621 1.066009674635773 1.1643131444395138 1.0557886287714173 1.0049886062829967 1.0 18.091696191777313 1.5025801633129454 3.41248558281949 1.005298638670092 1.124919784862963 0.49758711864102556 0.04930379013315447 0.182319719689381 4.4231629949264075 0.035190341823928745 0.013213073722143935 31.81120814485346 -1.5025801633129454 0.11962114619287112 IS(ph)DAELEAELEK ddPTM_BT-474_Trastuzumab_2h_R1 3 ISDAELEAELEK 12 0 Q8WUX9 Q8WUX9 CHMP7 Charged multivesicular body protein 7 1 IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK 281.48 4.6255999999999995e-28 333326000.0 456430.0 321812.0 317688.0 292011.0 323266.0 556180.0 535980.0 492480.0 780550.0 544150.0 True False 453972.63159414084 332523.31788053794 362415.7090064025 328979.5626594373 364432.0089523029 517732.58570689335 510052.59975756606 529231.3583627681 588193.9113341401 509421.88112974644 0.8911525955409775 0.6527464370849166 0.7114254853024219 0.6457900118657218 0.7153835012820826 1.0163139921644437 1.0012381066679368 1.0388861923031065 1.1546302448369525 1.0 18.958501403266432 2.720100973346108 4.840859664868022 1.0433827456600022 0.7130251053232044 0.8192155739868816 0.0749114314921218 0.07565426266131488 5.029215894156087 0.023813473083528103 0.023329411783876423 524.929492023769 -2.720100973346108 -0.3303576403367978 IS(ph)DS(ph)ESEDPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISDSESEDPPR 11 0 Q96ST2;Q96ST2-3;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 IS(1)DS(1)ESEDPPR;IS(1)DS(1)ESEDPPR 206.32 3.9185e-08 1113430000.0 1172400.0 943270.0 806880.0 908180.0 853700.0 1045220.0 947650.0 969890.0 1234260.0 1005090.0 True False 1166087.9286658852 974666.1717312435 920481.6904733147 1023155.4948822061 962413.6347236669 972966.4015832255 901808.5491254482 1042268.1168016269 930093.161236662 940944.295699159 1.2392741355633976 1.03583833409291 0.9782531172999569 1.0873709523069703 1.0228168012948686 1.0340318826846946 0.9584080091110693 1.1076831238210336 0.9884678248095077 1.0 19.84374979176115 4.737009730827733 5.979777512941724 1.0281030736883447 1.244897106949859 0.6801901354282169 0.044290149764987574 0.07148209227498746 12.342389554484292 0.010058585777946107 0.06329748935906154 54577.00895110359 -4.737009730827733 0.21679403326151414 IS(ph)EDETER ddPTM_BT-474_Trastuzumab_2h_R1 3 ISEDETER 8 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5;G3V3T3 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 IS(1)EDETER;IS(1)EDETER;IS(1)EDETER 191.4 0.00019025 4981000000.0 3810730.0 3470830.0 3316870.0 2724050.0 2701000.0 3137490.0 3028520.0 3177780.0 3403010.0 3038780.0 True False 3790213.453091905 3586354.478388956 3783856.4652491324 3068914.450696862 3044956.339918735 2920602.701157034 2882018.9175301017 3414922.0800398733 2564383.7834977824 2844842.458769551 1.3323104910108958 1.2606513472595327 1.33007592514832 1.0787642884183564 1.0703426935056843 1.0266307338580185 1.0130680202153022 1.2003905768184058 0.9014150416634767 1.0 21.439917330732996 3.7020691733026774 5.756955190906079 1.056189313086513 1.30336749365984 0.729617624927093 0.07389109926460359 0.1017247198107174 9.75839817865821 0.019570677161776736 0.03136110349659205 5035.808114506814 -3.7020691733026774 0.24717818057332708 IS(ph)EDETERNGDDGTHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISEDETERNGDDGTHDK 17 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5;G3V3T3 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 IS(0.942)EDET(0.058)ERNGDDGTHDK;IS(0.959)EDET(0.041)ERNGDDGTHDK 189.57 2.1054e-10 2057100000.0 1104650.0 965340.0 802020.0 823610.0 932920.0 1219710.0 1285520.0 1156490.0 1881040.0 1244750.0 True False 1098702.6871381532 997470.7583396481 914937.444717191 927878.9415533639 1051721.8321499398 1135394.3185885039 1223334.486436708 1242793.1563372274 1417482.8966446365 1165308.98931591 0.9428423681715029 0.8559710492967272 0.7851457880319807 0.7962514234941854 0.9025261469641189 0.9743289796940746 1.0497940869355702 1.0664923790442946 1.2164008942184203 1.0 20.15228111497466 2.477184138621726 1.4458457696351008 1.0988326418077505 0.8424323281778143 0.7363932877192012 0.06468910051681384 0.20228509476542403 0.8561945921664731 0.03217701164805131 0.024160381598107124 300.04344180565806 -2.477184138621726 -0.2564003136299362 IS(ph)FVEEDVHPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISFVEEDVHPK 11 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK 183.81 3.3396e-06 420278000.0 981310.0 820920.0 850030.0 759480.0 753190.0 1196260.0 956150.0 996450.0 1698300.0 1075680.0 True False 976026.7359937915 848243.8259433804 969706.8354067911 855630.0901287607 849104.2819931098 1113565.3618931416 909897.3716522942 1070810.1588705743 1279776.72105409 1007029.18146402 0.9692139552250539 0.8423229848316834 0.9629381682832967 0.8496576920291871 0.8431774347975509 1.1057925454297552 0.9035461815808401 1.063335778724733 1.2708437298644606 1.0 19.941674059365436 1.916762570798503 1.1767473057250006 1.1282492955229289 0.9044299414888906 0.41780019552835446 0.09909399570706619 0.4366236458737892 1.1150558667691604 0.07488637382769087 0.03280691962573165 82.55864772750729 -1.916762570798503 -0.2238193540340383 IS(ph)MQDVDLS(ph)LGSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISMQDVDLSLGSPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 IS(1)MQDVDLS(0.5)LGS(0.5)PK 76.143 0.041352 33389000.0 103870.0 106820.0 97111.0 88112.0 92061.0 108740.0 101760.0 97766.0 139790.0 114100.0 True False 103310.77546104188 110375.43912594648 110783.38469605635 99266.97016567303 103784.42266170263 101223.05974642668 96837.4800390497 105061.79536568878 105340.62759003186 106818.04031407546 0.9671659876672402 1.0333033521436197 1.0371224221144821 0.9293090368799115 0.9716001375474299 0.947621389128672 0.9065648438627026 0.9835585361496727 0.9861688838355432 1.0 16.70479579630993 3.7424844966501234 24.999826426456778 0.9581705235163891 1.0146078643545104 0.3567467804690928 0.031738139113673215 344.32195013632867 2193736.907774929 0.008165834754827812 0.014033316951361983 5526.9367765368015 -3.7424844966501234 0.05643734083812135 IS(ph)MSEVDLNVAAPK ddPTM_BT-474_Trastuzumab_2h_R1 5 ISMSEVDLNVAAPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 IS(0.999)MS(0.001)EVDLNVAAPK;IS(0.999)MS(0.001)EVDLNVAAPK;IS(1)MSEVDLNVAAPK;IS(1)MSEVDLNVAAPK;IS(0.997)MS(0.003)EVDLNVAAPK 273.99 5.2788e-33 740338000.0 1112659.0 822302.0 761405.0 691304.0 707932.0 1341868.0 1068308.0 980156.0 1807753.0 989306.0 True False 1106668.5675720363 849671.824977944 868604.2057490995 778823.0155190045 798082.9439582934 1249107.8235775067 1016629.8607071261 1053300.2178513191 1362256.49579915 926167.6440925202 1.1948901201967328 0.9174060769640376 0.937847711793233 0.840909332653391 0.86170462663946 1.3486843678299845 1.0976736956765993 1.137267345247594 1.470853041010647 1.0 19.82091383143238 2.747473489595214 24.996617579342974 1.2029507939840847 0.9419131470341706 0.4223141926041125 0.1519362301429196 635.0300645702969 1780975.5132048763 0.04575287291622554 0.04789520765170306 559.0793989454718 -2.747473489595214 -0.26103764694991405 IS(ph)PGATLPESR ddPTM_BT-474_Trastuzumab_2h_R1 4 ISPGATLPESR 11 0 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 IS(1)PGATLPESR;IS(1)PGATLPESR;IS(1)PGATLPESR;IS(1)PGATLPESR 228.73 3.2007e-12 2209540000.0 1515560.0 1552080.0 1384260.0 1378180.0 1361140.0 1598990.0 1684480.0 1382490.0 1860210.0 1593040.0 True False 1507400.393354545 1603740.044547827 1579151.7757963862 1552657.4466920206 1534473.1108911475 1488455.5849175886 1602995.2670615024 1485658.4239419736 1401786.1710369377 1491370.823329838 1.0107482121642406 1.0753462649665482 1.0588592394952159 1.0410941547222614 1.0289011202895022 0.9980452625419207 1.0748468737523218 0.99616969884451 0.9399313363976899 1.0 20.50820759184329 1.536511083009648 5.288436515257419 0.9691798491123604 1.040892075955509 0.5378188282602567 0.027189126623798802 0.10392136082759003 6.248541568192191 0.015214917830002317 0.006773415516220201 34.39624890444182 -1.536511083009648 0.07171222684314849 IS(ph)PPIKEEETK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISPPIKEEETK 11 1 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;A0A087WTC9;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 IS(1)PPIKEEETK;IS(1)PPIKEEETK 87.51899999999998 0.0082749 579920000.0 1017000.0 587490.0 469350.0 429550.0 459480.0 812160.0 718240.0 726230.0 1229080.0 673890.0 True False 1011524.5849993235 607044.2495047958 535430.4003366672 483930.9859572462 517992.05444867094 756017.2908189974 683495.9872567516 780424.9703212178 926189.7028282181 630881.7632537443 1.6033504911957368 0.9622155606051954 0.8487016609502372 0.7670708112743565 0.8210604341725622 1.1983502057816227 1.0833979155327804 1.2370384052571295 1.468087614470636 1.0 19.267010122194453 2.268645672151355 1.831133070802984 1.240020140135617 0.9847486156632294 0.11400444541555199 0.24874404841344572 0.6650149722598002 4.498350781258343 0.12603931544001143 0.08259071229403987 185.62893462794247 -2.268645672151355 -0.25527152447238766 IS(ph)PPIKEEETKGDSVEK ddPTM_BT-474_Trastuzumab_2h_R1 5 ISPPIKEEETKGDSVEK 17 2 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;A0A087WTC9;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(0.998)PPIKEEET(0.002)KGDSVEK 119.83 5.2799e-05 8424470000.0 6014730.0 3199060.0 2789800.0 2530160.0 2650090.0 4835520.0 4690180.0 4569540.0 8911050.0 4364450.0 True False 5982347.361979326 3305538.7782273954 3182579.590623703 2850477.996576852 2987563.253185946 4501251.8839897085 4463298.075172468 4910542.278453956 6715041.129452429 4085907.0644063633 1.4641418093165794 0.8090097807223751 0.7789162945844184 0.69763652272179 0.7311872752103347 1.1016530266196083 1.092364071139473 1.2018242708531608 1.6434639906397501 1.0 21.962224959091625 2.0947417966972544 1.5721506587415741 1.3071881392473947 0.8833546084391742 0.2824213411809404 0.25568532540189715 0.4680680993964012 2.1982647362166556 0.15652781236629384 0.0824356561890181 124.37749240891861 -2.0947417966972544 -0.4238335308082205 IS(ph)PSSLSNNYNNMNNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISPSSLSNNYNNMNNR 16 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 IS(0.996)PS(0.004)SLSNNYNNMNNR;IS(0.995)PS(0.005)SLSNNYNNMNNR 256.98 1.2317e-26 209250000.0 137960.0 167508.0 137050.0 151912.0 163723.0 172439.0 170848.0 156554.0 201020.0 172822.0 True False 137217.23868879708 173083.40251927578 156345.4487400452 171144.04362411186 184572.15358775083 160518.6978077436 162583.4295372598 168236.85444510423 151481.31452999674 161792.35199964192 0.8481070767121351 1.0697872945172269 0.9663339880267716 1.0578005790069152 1.140796529048291 0.9921278467359128 1.0048894618802477 1.0398319349821712 0.936269932773658 1.0 17.303783886945308 4.747440964200704 24.505487044116435 1.026102520013606 0.84810695486437 0.4765216416386515 0.054940083419732694 742.064267939456 2047681.3659513067 0.012858303659749782 0.1508287914376679 55903.75296658592 -4.747440964200704 -0.17799556514923598 IS(ph)PTAGNQNGLLNK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISPTAGNQNGLLNK 14 0 A0A2R8Y8C6;Q8WXX7-2;Q8WXX7;A0A087WVB5;Q75MD7;A0A2R8Y568;A0A024RDL5;A0A2R8Y522;Q8WXX7-5 A0A2R8Y8C6 AUTS2 Autism susceptibility gene 2 protein 1 IS(1)PTAGNQNGLLNK;IS(1)PTAGNQNGLLNK;IS(1)PTAGNQNGLLNK;IS(1)PTAGNQNGLLNK 379.19 1.2009999999999993e-97 709640000.0 1016190.0 852390.0 798130.0 714670.0 706830.0 1021730.0 1070550.0 874020.0 1122320.0 941800.0 True False 1010718.9459493232 880761.2858693638 910499.7665296772 805147.1487232338 796840.6107903586 951100.209993714 1018763.4066018555 939243.8105836312 845739.2743175089 881693.517684453 1.1463381840480387 0.9989426804253506 1.0326714989590449 0.9131825657942353 0.9037614486302006 1.0787197488890927 1.155462058150753 1.0652724464282322 0.9592213817547747 1.0 19.749917727320774 IS(ph)PVPSPESAYTAETTSPHPSHDGSSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISPVPSPESAYTAETTSPHPSHDGSSFK 28 0 Q9UBU7;B4DXK0;Q9UBU7-2 Q9UBU7 DBF4 Protein DBF4 homolog A 1 IS(0.992)PVPS(0.008)PESAYTAETTSPHPSHDGSSFK 184.76 1.7714000000000003e-17 68557000.0 62864.0 74366.0 92332.0 90620.0 96252.0 119410.0 122850.0 63952.0 132550.0 122110.0 True False 62525.54720884698 76841.22735480376 105331.54303586906 102092.48270852206 108509.12166969929 111155.46776090491 116907.27616742598 68724.42298167598 99884.8285790023 114316.83525636935 0.5469495990562183 0.672177699657955 0.921400096491915 0.8930660342334295 0.9491963403846375 0.9723455649522252 1.0226601874102554 0.6011749960323266 0.8737543193441147 1.0 16.802678357012393 4.3927309713207086 3.5234498913544248 0.8850709456475536 0.5661854402070847 0.5273139720151184 0.1129268752593664 0.2008453829067504 4.733243851714706 0.031236577629675626 0.10833346671535225 24701.934813937663 -4.3927309713207086 -0.3188855054404689 IS(ph)PVPYEDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISPVPYEDLK 10 0 Q9Y2I9;F8VZ81;Q9Y2I9-2;Q9Y2I9-3 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 IS(1)PVPYEDLK;IS(1)PVPYEDLK;IS(1)PVPYEDLK;IS(1)PVPYEDLK 162.93 0.00021759 396850000.0 1233050.0 983266.0 892652.0 773262.0 734658.0 1054174.0 1039880.0 1001634.0 1414530.0 1028397.0 True False 1226411.3958047337 1015993.4144131513 1018329.6425297253 871156.8899156611 828212.3416408815 981301.4326386747 989577.0316726337 1076381.0152743948 1065938.0352309027 962763.8230050321 1.2738444948801566 1.0552883169643579 1.0577149018242689 0.9048500463972126 0.860244560348995 1.0192545764503094 1.0278502453321425 1.118011488959706 1.1071646127124277 1.0 19.876822406286802 4.831982731654029 2.0782617627209277 1.0134821922455035 1.3911376090912215 0.5172356200473551 0.0756435156633926 0.9171750383328001 3.541465110688122 0.022163291560076286 0.7078018058922079 67917.66267706291 -4.831982731654029 0.377655416845718 IS(ph)QEHLADHFDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISQEHLADHFDSR 13 0 P19174-2;P19174;V9GY71;V9GYH5 P19174-2 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 1 IS(1)QEHLADHFDSR 149.47 2.8195e-05 190940000.0 237110.0 211080.0 189360.0 175700.0 189880.0 248370.0 211190.0 84923.0 245780.0 189810.0 True False 235833.42610539775 218105.67019944562 216020.24205337424 197943.60198507292 214060.09249306514 231200.76650009176 200973.9328758541 91260.38549025629 185210.81228326823 177696.16329548327 1.3271723020448143 1.227407875074754 1.2156719540092913 1.1139441522770588 1.2046410486483823 1.3011016231995847 1.1309975924559679 0.5135754413476183 1.0422893147967927 1.0 17.43905300636989 1.9410343556729173 9.347152926063746 0.8030377572100857 1.223528986153601 0.5737417731899347 0.14458133243453808 0.28771916434471867 44.03845361497303 0.057578905145668574 0.03655417174643844 87.3040429143767 -1.9410343556729173 0.4204912289435152 IS(ph)S(ph)KSPGHMVILDQTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 2 IS(0.898)S(0.963)KS(0.139)PGHMVILDQTK 241.8 8.5063e-20 297280000.0 1175400.0 737310.0 718850.0 669700.0 618810.0 1031800.0 965350.0 994250.0 1727100.0 898690.0 True False 1169071.7769992177 761850.9176366924 820057.8316437912 754483.9513341122 697611.7855257727 960474.0945959446 918652.3325048821 1068445.9836992007 1301479.346954318 841334.8347927824 1.389544006325562 0.9055264160366465 0.9747104217380567 0.8967701325714615 0.8291725917869451 1.1416074253391704 1.0918986050674375 1.2699414543584837 1.546921978185852 1.0 19.68232055358216 1.9732354954328097 1.8773288648136968 1.302997558790371 0.9960232428748182 0.24528838799248587 0.19273664767538864 0.4136721307245418 2.708712745397871 0.11382410874869642 0.056614249635470536 94.02330120868379 -1.9732354954328097 -0.3069743159155528 IS(ph)SKSPGHMVILDQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 1 IS(0.333)S(0.333)KS(0.333)PGHMVILDQTK;IS(0.333)S(0.333)KS(0.333)PGHMVILDQTK 223.46 5.2529e-15 1558180000.0 1578480.0 1571330.0 1639000.0 2063460.0 1484460.0 1979640.0 2085200.0 2004320.0 3857100.0 2442500.0 True False 1569981.6390656163 1623630.7691609582 1869756.9535566168 2324693.824428682 1673497.1819162406 1842792.1463713069 1984330.909762445 2153892.536130735 2906569.387492041 2286617.5588705447 0.6865956368502196 0.7100578594187551 0.8176955286218336 1.0166517856956128 0.7318657968947156 0.8059030856395323 0.8678018333518738 0.9419557405981926 1.2711217825720347 1.0 21.124783661764358 1.5239749075035582 2.877951712191227 1.1336854615807916 0.8066968248523537 0.5884912511175391 0.10874945524612904 0.16069240988272496 2.8341883812155366 0.07920854059276082 0.028890410601977952 33.41757315938145 -1.5239749075035582 -0.3269886367284379 IS(ph)SPMHPSAGGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISSPMHPSAGGQR 13 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 1 IS(0.5)S(0.5)PMHPSAGGQR;IS(0.5)S(0.5)PMHPSAGGQR 113.65 0.00051842 750590000.0 724340.0 880350.0 932970.0 876620.0 829640.0 984570.0 943870.0 873910.0 1096000.0 960910.0 True False 720440.2339217403 909651.9175671864 1064324.066479386 987600.0021181275 935289.73633846 916508.9933284831 898211.4021664492 939125.6018250635 825905.4856475791 899583.9011235586 0.8008594118035325 1.0111918592930054 1.1831292947217829 1.0978409027603082 1.0396915008931413 1.0188143564861325 0.9984742957767528 1.0439555450604643 0.9180972276360693 1.0 19.77889831743668 1.2529325344722397 24.90179443413618 0.9590486019768315 1.0311307625046637 0.06964148930528224 0.09262083526532318 511.1205336110529 885612.6796361058 0.06380831086153087 0.023058779902804145 17.903277137611177 -1.2529325344722397 0.07208216052783223 IS(ph)WYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISWYLR 6 0 M0QYT0;M0R076;Q13011;M0R248;M0QZW4 M0QYT0;Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 1 IS(1)WYLR;IS(1)WYLR 122.13 0.020302 42471000.0 122467.0 115813.0 108078.0 106011.0 102075.0 134671.0 129724.0 114327.0 175916.0 122966.0 True False 121807.65127936291 119667.76569456312 123294.4429691836 119431.98173044738 115073.64620407438 125361.5107514348 123448.75452619587 122858.66128074288 132563.85895363084 115118.20460351088 1.0581093728736628 1.0395207787223733 1.0710247210146584 1.0374725886474165 0.9996129335096046 1.088980767057685 1.072365182825575 1.0672392060308065 1.1515455736145828 1.0 16.812756471368715 2.6871492708693374 24.999836862778235 1.0787243415150791 1.042513170346641 0.16919370196018968 0.03835223821003866 595.4161425053729 289533.1753778522 0.011815164702831107 0.011139470546854468 486.5744169009932 -2.6871492708693374 -0.03621117116843808 ISAIHILDVLVLNGTDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISAIHILDVLVLNGTDVR 18 0 Q8N1G2;H0YCQ1;H0Y4T0 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 ; 182.7 6.7046e-14 107680000.0 131485.0 162534.0 151865.0 160779.0 163278.0 162844.0 177309.0 142054.0 164586.0 169114.0 False True 130777.09936935692 167943.84593612218 173246.27196575666 181133.60491495795 184070.48547547267 151586.97757354312 168731.88628384308 152654.790815596 124025.98563940912 158320.99973422044 0.8260249719803278 1.0607806053401378 1.0942722207198783 1.144090835827426 1.1626410001482992 0.9574660204774983 1.065758090001325 0.9642106294923825 0.7833830372952186 1.0 17.27249310200971 1.5387388553876848 4.14440421026499 0.8859294580524836 1.0512991622954064 0.2582086208383677 0.10337302751656813 0.2143959542070783 8.146284031324761 0.0637783403885758 0.02670808047884868 34.573142434574514 -1.5387388553876848 0.16536970424292285 ISAPELLLHS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISAPELLLHSPAR 13 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR 168.41 1.949e-05 283280000.0 250430.0 240570.0 194571.0 199366.0 193863.0 285760.0 261940.0 215959.0 341740.0 293510.0 True False 249081.7127053888 248577.22702236398 221964.90555855044 224605.7151585437 218550.30393397453 266006.08380668465 249268.96149202713 232074.95719758162 257522.75608138985 274777.94051344634 0.9064836581857993 0.9046476822625423 0.8077973986695941 0.8174081032081706 0.7953706310106058 0.9680765614213036 0.9071651131318857 0.8445909331874658 0.9372031670380319 1.0 18.067906662037878 2.7406661518088438 24.998845835394555 0.9135184617020401 0.8458319795834353 0.37275372566928855 0.052675220120610426 269.04351764977076 3194339.01768393 0.017480564375676293 0.017751323071761308 550.3844455906494 -2.7406661518088438 -0.06768648211860484 ISDDKYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ISDDKYGR 8 1 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 0 ;;; 172.25 0.00025962 5482180000.0 5312500.0 6242800.0 5703300.0 5840900.0 5857400.0 6115000.0 6226000.0 5433900.0 6978700.0 6003600.0 False True 5283898.090274233 6450587.824147705 6506275.066027727 6580357.341119035 6603305.170470194 5692284.443161664 5924824.594370318 5839405.210785108 5258892.894789014 5620445.10805945 0.9401209314716686 1.147700529073377 1.1576085062547874 1.1707893618039462 1.1748722820905002 1.012781787513448 1.0541557617695443 1.038957786886252 0.9356719607932853 1.0 22.422252957735108 2.7222712676230776 24.12970408774017 1.0168516530140326 1.124965178023946 0.3761015610204589 0.0700795396300152 579.5387882010485 858479.139366997 0.022876854646875812 0.021633486542616168 527.5592809136404 -2.7222712676230776 0.10811352500991345 ISDEDWDIIHR ddPTM_BT-474_Trastuzumab_2h_R1 7 ISDEDWDIIHR 11 0 P51659-3;P51659;P51659-2;A0A2R8YD50;E7ER27;A0A2R8YDT8;A0A2R8YF45 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 ;;;;;; 247.31 4.2317e-16 8877140000.0 4841090.0 6081050.0 5469100.0 5500630.0 5853270.0 5903630.0 6084870.0 5485630.0 6930090.0 5735230.0 False True 4815026.1093356665 6283454.073177644 6239101.741730624 6197009.194007697 6598649.239450623 5495525.953750194 5790521.59163928 5894995.566064722 5222262.177948378 5369202.711222562 0.8967860534062961 1.1702769314416344 1.1620164253977265 1.1541767981780378 1.2289812090086123 1.0235273744207114 1.0784695425144015 1.0979275477424537 0.972632708955642 1.0 22.3562764433891 1.403750506121028 1.2222171910463917 0.9848877184831689 1.117428239124508 0.18560512737655066 0.08913563426167186 0.6742015253547092 1.9507002449939252 0.08006046253056785 0.026750218683286794 25.336726658068176 -1.403750506121028 0.13254052064133914 ISDSEGFK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISDSEGFK 8 0 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;; 144.38 0.0013642 980200000.0 1500160.0 1415080.0 1234420.0 1286580.0 1238980.0 1516380.0 1626060.0 1462700.0 2156050.0 1632260.0 False True 1492083.3052434446 1462180.0823660751 1408215.6062290142 1449460.8960839824 1396756.7589901958 1411556.2197745661 1547401.2656475757 1571854.1014401023 1624720.3670898362 1528087.769351907 0.9764382224433792 0.9568691744625476 0.9215541374473973 0.9485455777836165 0.9140553226092429 0.9237402772834414 1.0126389967140828 1.0286412423199731 1.0632375964758314 1.0 20.543295979695337 2.1431395229645096 4.663889481708118 1.0306577416421834 0.9393832340066002 0.7793930027555638 0.022492142743427916 0.09584577203575555 3.6050288827684476 0.00893022335962097 0.0065022024400714935 139.03992439943542 -2.1431395229645096 -0.0912745076355832 ISDTGSAGLMLVEFFAPWCGHCK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISDTGSAGLMLVEFFAPWCGHCK 23 0 H7BZJ3;P30101 H7BZJ3;P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 65.887 0.021807 194271000.0 147120.0 191377.0 147567.0 154583.0 163440.0 209697.0 178748.0 166536.0 337180.0 191566.0 False True 146327.92226656855 197746.86775516058 168343.15092464237 174153.19195024783 184253.11521522308 195201.13996364173 170101.2763563295 178963.7619726731 254086.5069805209 179340.0938720959 0.8159241980263967 1.1026361338708357 0.938681068410188 0.9710778453949771 1.0273949970530913 1.088441160864217 0.9484843722544527 0.9979015740914511 1.4167858480197608 1.0 17.452338532437565 1.3888969818582357 16.71711586024513 1.2082651055976723 0.9907886043802904 0.3509788937138236 0.1207112771455229 1.8178717471682078 341.5102945709261 0.07176118044541 0.02623069854484454 24.484823732554226 -1.3888969818582357 -0.21747650121738193 ISDYFEYQGGNGS(ph)SPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISDYFEYQGGNGSSPVR 17 0 B3KRP1;Q9UKI8;Q9UKI8-4;Q9UKI8-5;Q9UKI8-2;C9JWT6 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 ISDYFEYQGGNGS(0.5)S(0.5)PVR;ISDYFEY(0.001)QGGNGS(0.5)S(0.5)PVR 174.78 1.3747999999999998e-09 199264000.0 141546.0 158205.0 138420.0 148346.0 144967.0 169918.0 167722.0 149929.0 201074.0 177483.0 True False 140783.93206323916 163470.75778805793 157908.33283179186 167126.58838974196 163427.68816327266 158171.96860394816 159608.64609973953 161117.46330403571 151522.00695355964 166155.88298915885 0.8473003154057739 0.9838397223571307 0.9503625751373178 1.0058421368122514 0.983580510200387 0.9519492524635338 0.960595816581189 0.9696765495480417 0.9119268257473976 1.0 17.342177849073916 4.743229950024569 24.65048072655591 0.9679452875213517 0.8473002554269109 0.6634147428563926 0.025924650519187534 229.1053785823099 1209448.5401696616 0.005923968492593939 0.04762458321796657 55364.3174333312 -4.743229950024569 -0.12064503209444077 ISDYFEYQGGNGSS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ISDYFEYQGGNGSSPVR 17 0 B3KRP1;Q9UKI8;Q9UKI8-4;Q9UKI8-5;Q9UKI8-2;C9JWT6 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 ISDYFEYQGGNGS(0.018)S(0.982)PVR;ISDYFEYQGGNGS(0.002)S(0.998)PVR;ISDYFEYQGGNGS(0.038)S(0.962)PVR;ISDYFEYQGGNGS(0.168)S(0.832)PVR 387.29 8.978199999999996e-122 1930000000.0 1097740.0 1170010.0 1125220.0 1161760.0 1129370.0 1387610.0 1377920.0 1167310.0 1391230.0 1402490.0 True False 1091829.8898103805 1208953.0755640185 1283641.1954124314 1308838.696882063 1273188.5751995647 1291687.7867825928 1311264.7454344279 1254420.599680075 1048380.0080269 1312981.8874679008 0.8315650811573538 0.9207690426678292 0.9776533916152848 0.9968444419337513 0.9696924133926341 0.9837818778091647 0.998692181476483 0.9553982516082062 0.7984725593196962 1.0 20.324415583772435 4.654361646940501 2.6983234719528086 0.9624132327366667 0.8181583808109775 0.3222747152762161 0.05630592095007864 0.42638637979166993 4.619262828921431 0.01381956694144476 0.12493144373821928 45119.22662620647 -4.654361646940501 -0.1442548519256892 ISEACSLAQQSGDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISEACSLAQQSGDHR 15 0 P52948-6;P52948-5;P52948;P52948-2;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 93.424 0.004573 0.0 158540.0 194740.0 210200.0 203110.0 236960.0 248280.0 209030.0 209980.0 228930.0 241260.0 False True 157686.4382554498 201221.80317718393 239794.3329088474 228823.7051746628 267135.45142804255 231116.98798825452 198918.42032785562 225649.77385683497 172513.26900483615 225862.58024692207 0.6981521156938021 0.8909036767276818 1.0616824294077158 1.0131102944299295 1.182734435850327 1.023263737337934 0.880705516205429 0.9990578059019142 0.7637974772812641 1.0 17.7850857466554 4.625596396300735 2.9893359522241005 0.9934302245445829 0.6823200246006448 0.4215922647593101 0.10407621634469809 0.29591224781187353 4.1959205718891415 0.02620176356249306 0.1881113473358175 42227.599731952614 -4.625596396300735 -0.31111019994393807 ISEDKNPDYR ddPTM_BT-474_Trastuzumab_2h_R1 3 ISEDKNPDYR 10 1 P14923 P14923 JUP Junction plakoglobin 0 ;; 113.69 0.0013271 2092150000.0 5966400.0 6272600.0 6388300.0 5249100.0 6151100.0 8332100.0 7357000.0 6521800.0 9339700.0 6807900.0 False True 5934277.565329356 6481379.699133225 7287717.111900998 5913635.521797651 6934406.124573917 7756121.538653684 7001113.803530744 7008489.83302937 7038056.080568155 6373413.993463577 0.9310987127802166 1.0169400113942662 1.1434557867063255 0.9278599394080687 1.0880206639150825 1.2169492750052295 1.0984872174804463 1.0996445296378223 1.1042835265034123 1.0 22.603634945266187 3.0190065469111063 24.62426369748896 1.1129952937438394 1.014646194722724 0.28245039545291584 0.07426183214100121 257.64295727255984 333791.00100743014 0.02092089480629262 0.02500161203033641 1044.735968308677 -3.0190065469111063 -0.09834909902111533 ISEGLPT(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISEGLPTPTK 10 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 ISEGLPT(0.842)PT(0.158)K;ISEGLPT(0.965)PT(0.035)K 112.43 0.01813 624650000.0 1896890.0 1504800.0 1373990.0 1237280.0 1128470.0 2137500.0 2049500.0 1595420.0 2688300.0 2188630.0 True False 1886677.3550042894 1554886.3583291918 1567435.8490648274 1393919.5211388248 1272173.9655342817 1989739.6561337763 1950357.855149691 1714478.341778607 2025804.4863744415 2048949.759619587 0.9208021554196499 0.7588699288643738 0.7649947694939291 0.680309272882134 0.6208907561357075 0.9711022179983545 0.9518817364813275 0.8367595807214527 0.9887038356423914 1.0 20.966453179131463 2.7209778219910117 24.988264270652735 0.9313924347622322 0.746765251836256 0.5854386967420722 0.08364934848728812 658.0323812116594 935179.359947565 0.02820763389161299 0.02664707691467018 525.9904050828139 -2.7209778219910117 -0.18462718292597624 ISEKEEVTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISEKEEVTTR 10 1 Q03252 Q03252 LMNB2 Lamin-B2 0 82.505 0.016245 619600000.0 355890.0 435890.0 336230.0 374810.0 459530.0 713630.0 616260.0 621260.0 1019600.0 730120.0 False True 353973.9277830962 450398.33514893043 383568.2614364494 422260.90756986535 518048.4216522975 664298.4378043263 586449.1494581839 667621.575894358 768333.2419400286 683523.116512819 0.5178667981106352 0.6589365074392236 0.5611635541945214 0.6177712170499009 0.7579091462118559 0.9718741352793265 0.8579799794484134 0.9767359139225794 1.1240779183298026 1.0 19.38263060453509 2.8666463993972453 0.955695832078623 1.016681962302558 0.5627864532617007 0.8896425707219818 0.06648069040954467 0.1722105142666668 0.3402759930466457 0.03620958166333091 0.03867999124357573 735.6079249608684 -2.8666463993972453 -0.4538955090408573 ISELDAFLKEPALNEANLSNLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISELDAFLKEPALNEANLSNLK 22 1 Q06323;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 128.88 1.4583e-05 177800000.0 174390.0 178570.0 196110.0 204260.0 182210.0 199220.0 176740.0 193340.0 242470.0 209350.0 False True 173451.10361655036 184513.59450215567 223720.5833813226 230119.29505675053 205413.36345671696 185448.39031343657 168190.41098763415 207768.0125606269 182716.51743154056 195989.1037664478 0.8850038103304199 0.9414482282751442 1.1414950070281522 1.174143310186133 1.048085630829251 0.9462178598174918 0.8581620496007767 1.060099814570383 0.9322789579632772 1.0 17.58041392276155 2.7451113367813895 23.012112932202832 0.9626538141949547 1.045978595072096 0.1503210170560032 0.09240955683269851 365.9047919125496 1285389.2406288874 0.031030740803023447 0.032137717777457074 556.0467884963102 -2.7451113367813895 0.08332478087714124 ISELGSQLSDEAVEDGLFHEFK ddPTM_BT-474_Trastuzumab_2h_R1 3 ISELGSQLSDEAVEDGLFHEFK 22 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 ;; 225.39 6.125e-26 231017000.0 205222.0 185974.0 164015.0 161095.0 171536.0 209625.0 209484.0 177356.0 265022.0 210414.0 False True 204117.10755430756 192164.03216634298 187106.88635606348 181489.61048255753 193380.09282647184 195134.11715417216 199350.45861340722 190591.20531551988 199710.87921285813 196985.19837551157 1.0362053049549462 0.9755252361653182 0.9498525163265459 0.9213362830266317 0.9816985967536133 0.9906029425733263 1.01200729931691 0.9675407436055025 1.013836982980572 1.0 17.587727702938192 3.004093931998493 24.992518802494057 0.9930564166914203 0.967323169587896 0.1386321754348836 0.029543679992311864 249.15165689251026 1520984.787153481 0.008897290913777346 0.010593274097713561 1009.4711973778032 -3.004093931998493 -0.025733247103524315 ISELGSQLSDEAVEDGLFHEFKR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISELGSQLSDEAVEDGLFHEFKR 23 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 62.663 0.028360000000000007 51583000.0 8049.3 8318.5 8561.4 7886.8 7150.5 9932.3 10915.0 9156.7 14167.0 9535.7 False True 8005.963463161302 8595.376243860559 9766.770702977188 8885.268071348182 8061.073790666021 9245.703479119296 10386.999750650828 9840.019450780464 10675.732678074135 8927.123462076494 0.8968133461099321 0.962838284960969 1.0940557442123007 0.9953114358834492 0.9029867039377738 1.0356867493091328 1.1635326647801014 1.1022609346204366 1.1958759978425242 1.0 13.123979663196055 2.4369551008813746 5.414675677625645 1.1218170362140543 0.9772107714749194 0.4871396810110612 0.06978049992719806 0.15869864645334736 11.456898418157394 0.024187419869600015 0.020386706606256126 273.4985957789049 -2.4369551008813746 -0.14460626473913485 ISEQFTAMFR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISEQFTAMFR 10 0 Q13509;A0A0B4J269;Q13509-2;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1;P04350 Q13509;Q5JP53;P68371;Q13885;Q9BVA1;P04350 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain 0 ; 172.88 8.3316e-06 5420900000.0 620220.0 737750.0 705180.0 690790.0 603160.0 669650.0 667550.0 522050.0 918080.0 765650.0 False True 616880.80443292 762305.5627707072 804463.2144655607 778243.9431717051 679968.8507905898 623358.6716865415 635258.0562113572 561008.0219161866 691831.485641724 716785.5614940557 0.8606211363229807 1.0635057452632979 1.1223206181619385 1.0857416568904465 0.9486363667444336 0.8696585215628831 0.8862595598148435 0.7826720459419285 0.9651861348876534 1.0 19.451182051326303 3.015188753697566 3.9428285033312114 0.8790157641410348 1.0410290457820348 0.3295903663900417 0.08568944926153405 0.20774506820435718 7.297669901440975 0.026341950631536427 0.030590848329708178 1035.592159450226 -3.015188753697566 0.16201328164100004 ISESVLRDS(ph)PPPHEDYEDEVFVR ddPTM_BT-474_Trastuzumab_2h_R1 4 ISESVLRDSPPPHEDYEDEVFVR 23 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 ISESVLRDS(1)PPPHEDYEDEVFVR;ISES(0.001)VLRDS(0.999)PPPHEDYEDEVFVR;ISESVLRDS(1)PPPHEDYEDEVFVR;ISES(0.001)VLRDS(0.999)PPPHEDYEDEVFVR 227.33 5.202e-33 3183520000.0 1061580.0 1144640.0 1081280.0 1004410.0 910730.0 1133190.0 1173920.0 985300.0 1097350.0 1116810.0 True False 1055864.5712326253 1182738.6504505088 1233514.8253457574 1131568.2030155233 1026706.0671803751 1054855.2425423327 1117133.004790106 1058828.0892520233 826922.7962366513 1045534.229650854 1.0098804432115254 1.1312290089684323 1.1797938224917588 1.0822870939322564 0.9819918258661255 1.0089150719576072 1.0684805653499856 1.0127148965802952 0.7909093483364902 1.0 19.995808864287685 2.3006107690139874 0.6745387766308905 0.9326104405286727 1.10452673381948 0.37800402342546446 0.07819476776318895 0.8242606774092167 0.7377746897773311 0.06824197056725576 0.04773145652288528 199.80703214443315 -2.3006107690139874 0.17191629329080726 ISESVLRDS(ph)PPPHEDYEDEVFVRDPHPK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISESVLRDSPPPHEDYEDEVFVRDPHPK 28 2 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 IS(0.021)ES(0.019)VLRDS(0.96)PPPHEDYEDEVFVRDPHPK;IS(0.031)ES(0.028)VLRDS(0.939)PPPHEDY(0.002)EDEVFVRDPHPK;IS(0.165)ES(0.328)VLRDS(0.507)PPPHEDYEDEVFVRDPHPK;ISES(0.002)VLRDS(0.998)PPPHEDYEDEVFVRDPHPK 176.44 8.845e-14 3309220000.0 921520.0 893420.0 839513.0 878363.0 914757.0 1264500.0 1192240.0 969656.0 1456240.0 1209210.0 True False 916558.6387104976 923156.9446162052 957709.1332221922 989563.6657394137 1031245.8817604742 1177088.0913128238 1134566.796400911 1042016.6545333999 1097369.1646162681 1132037.1825432356 0.8096541817216254 0.8154828824104877 0.846005014667983 0.8741441367820262 0.9109646729480002 1.0397963154075707 1.0022345678186932 0.9204791773644788 0.969375548381651 1.0 20.11048991458739 3.263454562057561 1.8160629820642664 0.9773119370415224 0.8231132788114265 0.8283161862571898 0.03228122060923864 0.15290252302498963 1.0398697868858902 0.011544991646713399 0.016553763007612427 1834.233250921666 -3.263454562057561 -0.15419865823009593 ISEVFDCWFESGSMPYAQVHYPFENK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISEVFDCWFESGSMPYAQVHYPFENK 26 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 192.47 4.2821e-18 77607000.0 42632.0 35987.0 32237.0 30900.0 29926.0 41239.0 39400.0 35208.0 51409.0 40561.0 False True 42402.4740488605 37184.80554039912 36775.68939097291 34811.936831751635 33736.89871470125 38388.24499616412 37494.07147738366 37835.39974260142 38739.94079530694 37972.36225398083 1.116666742122825 0.979259738745931 0.9684856882222949 0.9167703762781345 0.8884593086163464 1.010952248358994 0.9874042396046344 0.9963931000535777 1.0202141372241238 1.0 15.212662131103116 ISEVFDCWFESGSMPYAQVHYPFENKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISEVFDCWFESGSMPYAQVHYPFENKR 27 1 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 222.72 1.4749e-34 342340000.0 282530.0 275080.0 275350.0 287140.0 271193.0 327640.0 305900.0 288520.0 429970.0 313130.0 False True 281008.8898720342 284235.87151062855 314116.8866148959 323491.8945588723 305727.82106315537 304991.01798159996 291102.44834851916 310050.82747487427 324009.65480281867 293145.77531591925 0.9585977814935068 0.9696058938741702 1.071538166553403 1.1035188694438782 1.0429207814224053 1.040407345638583 0.9930296557567715 1.0576677325154582 1.1052850905104732 1.0 18.161258739853814 4.249700504136343 22.69555756639601 1.0521221213895982 0.9641015935332687 0.49871854554959505 0.03516644595987602 57.14923978830291 116423.5226132107 0.008760122615538274 0.02340484569678013 17770.535051469753 -4.249700504136343 -0.08802052785632941 ISFDDQHFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISFDDQHFEK 10 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ;;; 148.28 2.5396e-05 1708100000.0 4321920.0 4460990.0 4124150.0 4163800.0 4215980.0 4841360.0 4681260.0 4539070.0 6198480.0 5089550.0 False True 4298651.262930452 4609471.355424596 4704794.472245584 4690936.653075962 4752860.062928761 4506688.178535587 4454809.569650179 4877798.452330428 4670947.659376644 4764730.561617022 0.902181394591094 0.9674149032805466 0.9874208859039665 0.9845124697846469 0.9975086736732008 0.9458432371475246 0.9349551904438297 1.0237301751381789 0.9803172706142378 1.0 22.18396320352037 4.730559257875255 2.9854742467773137 0.9816899568105957 0.8898124481841406 0.4904588638075954 0.024233049055631502 0.3298760611615102 4.363747912348595 0.006209790302431234 0.071706558622765 53772.37985397631 -4.730559257875255 -0.09187750862645505 ISFEEFER ddPTM_BT-474_Trastuzumab_2h_R1 5 ISFEEFER 8 0 A0A494C1S7;Q9Y5Q9;Q9Y5Q9-2;F8WC64;H0YFI7 A0A494C1S7 GTF3C3 General transcription factor 3C polypeptide 3 0 ;;;; 183.04 0.00052435 405357000.0 539794.0 663441.0 622616.0 633813.0 604610.0 651001.0 629144.0 561992.0 698038.0 655453.0 False True 536887.8090807507 685523.2326264469 710274.920924713 714053.6608136895 681603.4996957667 605998.8331615183 598709.9011565249 603930.6967775522 526015.8881299861 613621.4283784546 0.8749495768091429 1.1171761625698091 1.1575132289654115 1.1636713253326816 1.1107882941717995 0.9875776906339799 0.9756991419590175 0.984207312273121 0.8572319410683336 1.0 19.226989338756695 2.6296395983878655 3.806516657336356 0.9593488664424388 1.0949897113178908 0.35152581316896925 0.08422077764119733 0.2699465869613505 7.020664190974514 0.02883132548473521 0.02705451771491557 426.2256663365843 -2.6296395983878655 0.13564084487545203 ISFPGSSES(ph)PLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISFPGSSESPLSSK 14 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 ISFPGS(0.001)S(0.034)ES(0.965)PLSSK 235.02 3.3197e-17 178410000.0 208430.0 205700.0 169750.0 151550.0 183800.0 242550.0 214840.0 190570.0 304850.0 239560.0 True False 207307.8360387502 212546.6001517242 193649.3245065498 170736.2144612286 207205.8405320489 225783.08940128546 204447.3684315003 204791.30109485218 229723.80228071575 224271.07570236555 0.9243627845878458 0.9477218561781854 0.8634609875575108 0.7612939561043347 0.9239079978687744 1.0067419023794515 0.9116082749022274 0.9131418327285087 1.0243131066334503 1.0 17.774884042112273 3.006857511163824 24.998432673924707 0.9574166209130093 0.8741814721580389 0.3728967326966508 0.05793530967459458 220.93991902554183 805407.8807565307 0.017796440863416214 0.021225618858147076 1015.9153238145311 -3.006857511163824 -0.0832351487549704 ISGETIFVTAPHEATAGIIGVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISGETIFVTAPHEATAGIIGVNR 23 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 367.85 2.3339999999999992e-118 4629500000.0 1129760.0 1314710.0 1308820.0 1271110.0 1246480.0 1312140.0 1527900.0 1131990.0 1489570.0 1422520.0 False True 1123677.4976881372 1358469.3275910232 1493090.4795326223 1432032.395670154 1405211.8395342114 1221434.8502453198 1453989.6398551892 1216464.84192875 1122485.4327153878 1331733.5557193542 0.8437705071425998 1.0200759166552857 1.1211630683332214 1.0753144947951858 1.0551749135548116 0.9171765966244989 1.0918022104427614 0.9134446126287326 0.8428753844150618 1.0 20.344874035897266 1.6246042904417661 7.539394394951085 0.906766432565531 1.0213702922458783 0.21305592333629186 0.08612360169062819 0.16021045252412622 19.923190815150043 0.04417429659725472 0.022028605227294083 42.13124475743058 -1.6246042904417661 0.11460385968034725 ISGLIYEETR ddPTM_BT-474_Trastuzumab_2h_R1 7 ISGLIYEETR 10 0 P62805 P62805 HIST1H4A Histone H4 0 ;;;;;; 220.39 1.3643e-08 2244842000.0 1282991.0 1440824.0 1372266.0 1365205.0 1239395.0 1364810.0 1344389.0 1263956.0 2315114.0 1465607.0 False True 1276083.519009699 1488780.9558435006 1565469.1248501043 1538039.813022377 1397224.6067802983 1270463.897117164 1279355.7680052866 1358278.8149585181 1744585.1756382377 1372070.7064907204 0.9300420983940958 1.0850613957434339 1.140953682229708 1.1209625026950307 1.0183328017795181 0.9259463751445934 0.9324269966213575 0.9899481189511894 1.2714980120086374 1.0 20.38792339870305 4.752210319444373 23.011885507714524 1.0451498741892622 0.9300418654621804 0.11548303449113473 0.1002363004218458 1880.3790342775658 3169937.976049921 0.025085942058723533 0.4477726843850635 56521.062785316666 -4.752210319444373 -0.11510800872708182 ISGWTQALPDMVVSHLFGK ddPTM_BT-474_Trastuzumab_2h_R1 3 ISGWTQALPDMVVSHLFGK 19 0 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 ;; 184.7 2.4330000000000002e-14 944230000.0 1088385.0 1038510.0 1046410.0 923530.0 857514.0 1670390.0 1536600.0 1056720.0 1503450.0 1468060.0 False True 1082525.2560909407 1073076.1775574484 1193735.4324412304 1040448.8033083363 966713.3250163189 1554919.870975112 1462268.787617963 1135577.812315435 1132944.8926978593 1374367.1539306003 0.7876536142434641 0.7807783927959284 0.8685709848545383 0.7570384670011363 0.703387971876061 1.1313715309101668 1.0639578975937907 0.8262550578771884 0.8243393255271788 1.0 20.3903360322842 2.7604064508589734 24.998495679399568 0.9555192429524301 0.7832597862213582 0.489032170519746 0.09641030453074904 840.7383351708517 962067.417451797 0.032274441828964225 0.0342046238088126 575.9787365786773 -2.7604064508589734 -0.1722594567310719 ISHLNDLSIPVDEEDPSEDIFTVLTAEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISHLNDLSIPVDEEDPSEDIFTVLTAEEK 29 0 Q96PZ0;Q96PZ0-2;E7EUH7 Q96PZ0 PUS7 Pseudouridylate synthase 7 homolog 0 98.236 0.00092848 47543000.0 30423.0 30111.0 26530.0 25434.0 29451.0 34554.0 27629.0 28969.0 40907.0 31117.0 False True 30259.205948313076 31113.22643251611 30265.193397106155 28653.94179219324 33201.41028024681 32165.36331136679 26292.479716970385 31130.813881601378 30826.01797571669 29131.086419396008 1.038725625013626 1.0680420903149137 1.0389311597028197 0.9836207747169677 1.1397244099396413 1.1041594140461066 0.9025574720572169 1.0686458250617772 1.0581829160752538 1.0 14.830271886130618 -0.7308402839590983 5.07931185815151 0.999999984423404 1.0435471577887714 0.045077592642545405 0.061548255189171966 3885030.5844962085 764873.67032605 0.6613823659984989 0.014174041362240057 0.18584878064867727 0.7308402839590983 0.0435471733653674 ISHLPLVEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISHLPLVEELR 11 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 118.48 0.00071433 308810000.0 127170.0 170350.0 137190.0 144110.0 138300.0 166660.0 154000.0 125470.0 167940.0 162590.0 False True 126485.33084991525 176019.9967712505 156505.15952314337 162354.31122406866 155911.6852316775 155139.18647544086 146550.43166287002 134833.20852375022 126553.43728070654 152213.36699969776 0.8309738713694337 1.1564030166391366 1.0281958976930992 1.0666232172920205 1.0242969346574344 1.0192218300758626 0.9627960707495619 0.8858171340761285 0.8314213119072377 1.0 17.21573553273551 2.031849855974772 2.4988940928677534 0.8945379450241371 1.0305823699181904 0.2633334615457579 0.08509336512884075 0.3222316127120644 3.8448338419409884 0.040674547782188285 0.023339007290963557 107.60931230513735 -2.031849855974772 0.13604442489405333 ISHQSQDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISHQSQDKK 9 1 Q9NRX4;Q9NRX4-2 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 ; 149.33 5.7048e-05 1747890000.0 1842180.0 2328290.0 2360200.0 2226910.0 2266360.0 1909950.0 3034400.0 2678800.0 3623600.0 3262900.0 False True 1832261.9075654387 2405785.725168975 2692495.644773841 2508836.5776697737 2554967.512231851 1777919.6520386944 2887614.479466318 2878705.658670778 2730612.333752339 3054658.928490766 0.5998253652726838 0.7875791639879142 0.881439043705 0.8213147969712383 0.8364166252414307 0.5820354067866824 0.9453148606980549 0.9423983908059672 0.8939172580886041 1.0 21.54257987256136 2.124708565735426 23.689390521256392 0.9409938450074911 0.7658020287454795 0.5000836786192655 0.09431488182141912 4.916833558668128 1000.6644023645697 0.03557672891610383 0.026275165004641075 133.26268698641633 -2.124708565735426 -0.17519181626201152 ISHSLYSGIEGLDES(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISHSLYSGIEGLDESPSR 18 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 ISHSLYSGIEGLDES(1)PSR 304.7 4.202799999999999e-50 169780000.0 84796.0 109160.0 82761.0 102850.0 100250.0 106620.0 115290.0 103400.0 130510.0 121410.0 True False 84339.46775772118 112793.32461138668 94413.02942849233 115870.79945455195 113016.24327169682 99249.61035648333 109712.98224943058 111116.23305456113 98347.55924440273 113661.50985566963 0.7420231163990136 0.9923616601135653 0.8306508469611258 1.0194374472210315 0.9943229103256486 0.8732033428247882 0.9652606444234905 0.9776065195303093 0.8652670492349348 1.0 16.794384259524467 4.7467112322365805 24.654942300917774 0.9459956790579201 0.7420229933265678 0.4891136884958486 0.06267865668938634 696.6114042847717 2107134.2026340403 0.014075887371903009 0.15762425268242072 55809.8984433536 -4.7467112322365805 -0.2039726857313523 ISICS(ph)SDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISICSSDKR 9 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 IS(0.004)ICS(0.969)S(0.028)DKR;ISICS(0.956)S(0.043)DKR 93.766 0.0056211 1344460000.0 2531900.0 2249300.0 2055890.0 1980160.0 1770320.0 2485300.0 2370000.0 2210700.0 3651000.0 2270400.0 True False 2518268.5317205326 2324166.590769435 2345341.4418837754 2230848.0529696196 1995759.7584912754 2313497.0607669144 2255354.0457207942 2375673.659707143 2751259.9708935325 2125501.1282127686 1.18478814162664 1.0934675874407624 1.1034298739026593 1.0495633351394325 0.9389596326252782 1.0884478159332818 1.061092848074474 1.1177004933912844 1.294405321349763 1.0 21.0193715940818 -0.5386612427454242 7.402353379071986 1.0000039377670025 1.0959812194189047 0.10744779470546861 0.08710721592341351 0.0 0.0 0.08481620630113335 0.01999137154334953 0.2892935542597398 0.5386612427454242 0.09597728165190222 ISIEMHGTLEDQLSHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISIEMHGTLEDQLSHLR 17 0 P12814-3;P12814;P12814-2;P12814-4;H9KV75;H0YJ11;H0YJW3 P12814-3 ACTN1 Alpha-actinin-1 0 88.565 0.0024662 124870000.0 299360.0 345190.0 309790.0 270080.0 285910.0 364670.0 344250.0 338880.0 545360.0 403450.0 False True 297748.27902202297 356679.4404782382 353405.7392570496 304272.1003080737 322318.94377866224 339461.22124084417 327597.3123372927 364168.9463977729 410963.3354496019 377701.475589077 0.7883164304763276 0.9443421949092149 0.9356747645898527 0.8055888577970732 0.8533695646170348 0.8987553482850658 0.8673445392988206 0.9641713626609526 1.0880638864559595 1.0 18.526886894489415 1.5371250686653475 3.2316197903681254 1.042717681964215 0.8738499720038098 0.6509034856514005 0.05124806987219839 0.1285032178330487 2.9486944880914847 0.03463795411249035 0.01332082428377635 34.44491113653102 -1.5371250686653475 -0.16886770996040523 ISIEMNGTLEDQLSHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISIEMNGTLEDQLSHLK 17 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 265.87 1.3639e-27 1097100000.0 868450.0 735450.0 711290.0 698200.0 576680.0 836850.0 783390.0 732890.0 979000.0 853040.0 False True 863774.3616938647 759929.0086610866 811433.4493564892 786592.0484119402 650116.7797498474 779000.5292330064 745494.4328595838 787581.9733400134 737738.5679279012 798598.2568757135 1.081613131830683 0.9515785967704096 1.0160721518864688 0.9849658969821146 0.8140723751304476 0.9754598416989069 0.9335037065772179 0.9862054751048442 0.923791858517312 1.0 19.60711039739762 7.999999904668599 0.9160536975410709 0.9471573329717372 73.081914955201 0.33098749062308686 0.05426120238205651 1171.288825938101 2.361474499855037 0.016532117047943887 176788.44571578765 99999978.04913603 -7.999999904668599 72.13475762222926 ISINQALQHAFIQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISINQALQHAFIQEK 15 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 104.66 0.0013763 155800000.0 264000.0 283200.0 260770.0 231310.0 199720.0 300520.0 277360.0 203740.0 372110.0 248450.0 False True 262578.65333315724 292626.14080198517 297484.14934652724 260593.82228325162 225153.1581668162 279745.75974798744 263943.03718190675 218944.11337075703 280408.47651854093 232593.70829125357 1.1289155466078067 1.2580999845256307 1.2789862268072099 1.1203820782500975 0.9680105271157192 1.2027228156906553 1.1347814999853634 0.9413157173477602 1.205572062024196 1.0 17.827452546571358 3.5478086962673165 5.741646856756781 1.0711278077158515 1.2235778653692597 0.3339455355939416 0.09236622818884373 0.24252944947922214 14.698163419403144 0.02465064662744834 0.03815408081600321 3530.2762929423984 -3.5478086962673165 0.15245005765340824 ISIPDVDLDLKGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISIPDVDLDLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 125.61 8.228100000000001e-05 134580000.0 157120.0 137600.0 136610.0 121110.0 137190.0 190580.0 165620.0 172910.0 270180.0 191630.0 False True 156274.08337767312 142179.93281904355 155843.5005645938 136442.513582312 154660.333311163 177405.65317706447 157608.32787015938 185813.42221918926 203597.7592265172 179400.0093373027 0.871092950078119 0.7925302420231258 0.8686928230398325 0.7605490885219339 0.8620976881911702 0.9888831880912085 0.878530209961298 1.035749233824332 1.1348815419720442 1.0 17.452820439782503 2.1629278386913047 0.9587765012759313 1.067080426812162 0.8244885150315789 0.6938213874687911 0.061238322408316184 0.303786606567844 0.524309949396256 0.0460464887893572 0.02467159691359878 145.5217265151923 -2.1629278386913047 -0.24259191178058315 ISIPDVGLHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISIPDVGLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 132.32 0.0001849 336480000.0 807590.0 849480.0 874170.0 774510.0 774200.0 1147600.0 901850.0 836450.0 1278000.0 1145700.0 False True 803242.0251716845 877754.4282784951 997245.5375781499 872562.8865877012 872789.7809570838 1068269.113159823 858224.0700984375 898870.1464070362 963054.0243226335 1072580.4451168808 0.7488874413370028 0.8183576647090977 0.9297629302476035 0.813517429448023 0.8137289701025404 0.9959804115610293 0.8001489063180854 0.8380445033277526 0.8978851224699402 1.0 20.032654425364917 -4.999999999947869 0.15438164985383832 1.5321539064859653 0.8070385472303222 0.3622072195201911 0.06513601900009838 159.81851030894325 1.4452432528814956 26.172004958181624 0.30625608915629726 1.0000000001200355e-05 4.999999999947869 -0.7251153592556431 ISKEEAMR ddPTM_BT-474_Trastuzumab_2h_R1 6 ISKEEAMR 8 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 ;;;;; 96.665 0.0080072 4103800000.0 2614370.0 3240190.0 3224530.0 2654920.0 2015800.0 2782420.0 3425550.0 2533060.0 4904840.0 3107440.0 False True 2600294.522403816 3348037.7654137863 3678515.7958827997 2991032.599784919 2272500.1814173213 2590077.8545121634 3259843.0596282138 2722089.79981805 3696107.903488752 2909120.51878677 0.893842144253361 1.150876267859148 1.264476934567462 1.028156991251882 0.7811639864150602 0.890330200411339 1.1205596463180256 0.9357088447312868 1.2705241600063342 1.0 21.47215163484262 4.781667400685141 20.88909019198297 1.0385185235393595 0.8938381997121871 0.08433645476352103 0.1498635534386396 8338.580293341354 4040029.920885911 0.037217706521143645 9.674802294388199 60487.74590466556 -4.781667400685141 -0.14468032382717233 ISLEVQLEQLRPFSHL ddPTM_BT-474_Trastuzumab_2h_R1 1 ISLEVQLEQLRPFSHL 16 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 0 139.04 3.0259e-06 118120000.0 89036.0 113520.0 110940.0 99835.0 114280.0 115600.0 108790.0 100860.0 126090.0 106730.0 False True 88556.6400688296 117298.44457571075 126559.3876922337 112474.10076368689 128832.88060937161 107608.84409312974 103527.4120818418 108386.68535670257 95016.80901943726 99918.4000238497 0.8862896128009642 1.173942382461214 1.266627444615056 1.1256595455575775 1.2893809406337597 1.0769672459471369 1.0361195941601413 1.0847520109492501 0.9509440603207971 1.0 16.60846275505278 2.4895373603781534 22.885870448772426 1.034904535791801 1.1579138702531313 0.24033348357758633 0.10720688366069087 291.9893136919154 538209.7141171888 0.0354285545382931 0.03184401860905903 308.7005195272157 -2.4895373603781534 0.12300933446133033 ISLPGQMAGT(ph)PITPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISLPGQMAGTPITPLK 16 0 Q9H8Y8;Q9H8Y8-3;Q9H8Y8-2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 1 ISLPGQMAGT(1)PITPLK;ISLPGQMAGT(0.984)PIT(0.016)PLK 247.86 2.731e-19 503200000.0 840510.0 574990.0 547450.0 486180.0 506490.0 721540.0 595090.0 611420.0 814550.0 672600.0 True False 835984.7875494389 594128.1945612053 624526.2014792972 547730.3381508419 570988.4992985715 671661.638122464 566303.223235438 657047.265127851 613815.0669107991 629674.0921581696 1.3276467905550187 0.9435487372918062 0.9918245156613824 0.8698632276159394 0.9068000516609206 1.06668139357677 0.8993592563010941 1.0434719695642258 0.9748139149365116 1.0 19.264245783547832 4.74085109475226 24.825218768709306 0.9671169716863869 1.3276469295127944 0.7668342005080958 0.05978056129541702 87.15593772352305 944568.5146920701 0.014040012299628077 0.09409862592486304 55061.88749930801 -4.74085109475226 0.3605299578264075 ISLSKS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISLSKSPTK 9 1 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-3 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 IS(0.001)LS(0.008)KS(0.985)PT(0.007)K 77.062 0.088559 254990000.0 182280.0 156780.0 158960.0 140700.0 114290.0 185170.0 186710.0 180490.0 338910.0 195030.0 True False 181298.62473321208 161998.32752448856 181340.18629491137 158512.60557370394 128844.15405009697 172369.6337432944 177678.12399853574 193959.08030964955 255390.17166133298 182583.01842641638 0.9929654263344215 0.8872584587584538 0.9931930573707439 0.8681672969361433 0.7056743565778164 0.9440616943944427 0.9731360864216548 1.0623062428328618 1.3987619104032882 1.0 17.47819306466987 1.6321671410168321 2.59376278059409 1.2040135424872875 0.8992744836791401 0.48220360908141 0.1205192734925445 0.1864538484874979 2.8699967254197905 0.07963360155368436 0.03187080088267526 42.871348178532074 -1.6321671410168321 -0.30473905880814744 ISLSKS(ph)PTKTDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISLSKSPTKTDPK 13 2 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-3 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 ISLS(0.005)KS(0.888)PT(0.107)KTDPK;ISLSKS(0.962)PT(0.029)KT(0.008)DPK 133.86 8.0585e-05 6335300000.0 8726100.0 6103600.0 5740500.0 5773500.0 5386600.0 8599400.0 9442200.0 8321400.0 17777300.0 8872000.0 True False 8679119.647160843 6306754.636295891 6548712.502679532 6504424.508029703 6072551.5811204165 8004943.7188101895 8985444.713293187 8942385.123213014 13396322.618615607 8305781.364298661 1.044949206641404 0.7593210511661996 0.7884523099570542 0.7831201211228771 0.7311234566349775 0.9637797297697259 1.081830151696019 1.076645860394389 1.612891314018689 1.0 22.98568446507032 2.0184046828662434 1.4101264678958396 1.267351165448614 0.8178985634563642 0.5237598952109161 0.17059001013262903 0.3133034353388655 1.162270668985833 0.11173871944479055 0.05368019890361811 104.32891308709456 -2.0184046828662434 -0.4494526019922498 ISMPDFDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 167.18 1.9548e-05 6583700000.0 4738500.0 4770600.0 4577400.0 4105900.0 4176700.0 5706500.0 5502400.0 4784600.0 6302300.0 5511900.0 False True 4712988.442496842 4929386.537111403 5221858.132525958 4625706.519012592 4708577.987759569 5312023.086656088 5236227.89079076 5141651.147706514 4749182.6114933705 5160125.823024997 0.9133475818490737 0.9552841744896973 1.0119633341546646 0.8964328928516099 0.9124928634006216 1.0294367363976495 1.014748103123026 0.9964197238687386 0.9203617846491347 1.0 22.29897481366283 2.743144946534183 24.99546904497614 0.9942261393363823 0.9406801638475718 0.3142593514376608 0.03993621632127738 520.2552321390026 2836629.855573405 0.012847613632510173 0.013204833584478928 553.5348215936926 -2.743144946534183 -0.05354597548881046 ISMPDLDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISMPDLDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 160.67 2.7202e-05 1772860000.0 1246280.0 1300220.0 1261040.0 1080310.0 1114240.0 1593570.0 1523590.0 1314170.0 1929130.0 1582410.0 False True 1239570.1669547255 1343497.0367004138 1438583.470843829 1217077.1352333215 1256131.8593821004 1483410.256760281 1449888.1310209886 1412240.0386200442 1453721.7605176235 1481419.2390306396 0.8367450174103537 0.9068986018971411 0.971084641634032 0.8215615830868449 0.8479246294951893 1.0013439934335835 0.9787156078583917 0.9533020777724862 0.9813034164919177 1.0 20.498548547884013 2.7353488201010494 24.998875722403817 0.9775179958724295 0.8806771240051183 0.6210626126190515 0.04127200553245483 216.86844267665094 1687979.617812148 0.01376496153583881 0.013479302648392495 543.6868388958488 -2.7353488201010494 -0.09684087186731116 ISMPDLDLHLKS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 ISMPDLDLHLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK 215.57 3.8978e-12 13520220000.0 25191750.0 18829590.0 18261090.0 16231640.0 14765570.0 23574900.0 20060180.0 16383780.0 31424100.0 18813180.0 True False 25056120.41706657 19456321.520422496 20832092.743760303 18286563.95973247 16645877.817109922 21945222.652345356 19089792.45607061 17606420.858749125 23680051.616366867 17612506.74562627 1.4226322680210628 1.1046878108508944 1.1828011222158115 1.0382715092088517 0.9451169022969208 1.2460022283764367 1.0838770841527823 0.999654456519731 1.344502060857825 1.0 24.07009692330172 5.33292004940089 1.5426350919298062 1.093429183467781 2.5052868227767613 0.39100856257192684 0.11749483822850017 6.0086506807450215 3.619608926051064 0.02973085329337188 20.294151937226285 215238.54590292176 -5.33292004940089 1.4118576393089803 ISMPDLDLNLKGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISMPDLDLNLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 59.709 0.090053 247950000.0 486600.0 552870.0 488230.0 468450.0 469170.0 569860.0 583960.0 543690.0 745440.0 560970.0 False True 483980.1996663426 571271.9437330273 556968.5402287657 527755.72196874 528916.018511541 530466.9195061491 555711.6238561666 584262.9086018793 561736.3003842443 525168.4143294201 0.9215714168269808 1.0877880850135973 1.0605522438739023 1.0049266246193111 1.0071360045270548 1.010089154321085 1.0581588852135113 1.1125248447165583 1.0696307794929314 1.0 19.00242062398708 2.098888012711242 5.0051606695000865 1.0759610082919047 1.020079735780795 0.14304095112740212 0.04858630213664878 0.3142145290384593 12.901270917403371 0.018289972342009447 0.013254670215473748 125.5706125234064 -2.098888012711242 -0.05588127251110975 ISMPDVDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 ISMPDVDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;;;; 165.63 2.1369e-05 8517780000.0 4974590.0 5136880.0 4624470.0 4381560.0 4050190.0 5747880.0 5368020.0 4737480.0 6451790.0 5303510.0 False True 4947807.3601689115 5307857.945490472 5275555.17938618 4936265.046748538 4565957.6891430775 5350542.584654129 5108348.364772202 5091014.814035995 4861832.804056742 4965035.451236651 0.996530117209244 1.0690473406727505 1.0625412912353298 0.9942053979733523 0.9196223740972131 1.0776443868737047 1.028864429054551 1.025373305797437 0.97921411675838 1.0 22.24337258821392 3.7344330364838942 24.89945513741122 1.0068757190345825 1.0453403589113215 0.15015260418801069 0.042024189320376555 645.1077897265827 3891602.3280178704 0.011370374459349594 0.01837994691242989 5425.4159082882825 -3.7344330364838942 0.03846463987673898 ISMPDVDLHMK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISMPDVDLHMK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 110.08 0.0018429 320930000.0 525510.0 557270.0 481260.0 444680.0 500400.0 685490.0 603350.0 547840.0 777040.0 689170.0 False True 522680.7125496494 575818.3950731709 549017.2248130917 500976.44240593247 564122.973896829 638103.6897698911 574163.6554791734 588722.6026751521 585548.9038025505 645186.5805718786 0.8101233477087468 0.8924835271105277 0.8509433415779594 0.7764830476819256 0.8743563348710744 0.9890219495952483 0.889918781277577 0.9124842648669504 0.9075652244402439 1.0 19.299356906197975 2.993615777137578 24.78701044572664 0.928821893644428 0.8365228718763174 0.5757900094114228 0.04308578194560312 209.64984658817838 813979.8383856283 0.012405079232120477 0.014342812078635444 985.4073042837889 -2.993615777137578 -0.09229902176811067 ISMPDVDLHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISMPDVDLHVK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 114.86 0.0012005000000000002 644711000.0 803110.0 824010.0 789070.0 687520.0 729210.0 978850.0 855650.0 810720.0 1163890.0 906900.0 False True 798786.1449939084 851436.6747254353 900164.1972806094 774559.9615069856 822070.5711337073 911184.4034650504 814258.940599576 871220.0431527453 877064.9048269722 849020.8655638463 0.9408321719672031 1.0028454061137646 1.0602380150961286 0.9122979103612369 0.9682572060084284 1.0732179153923624 0.9590564538821028 1.026146798611547 1.0330310365747035 1.0 19.69544048437011 ISMQDVDLSLGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 16 ISMQDVDLSLGSPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK 345.11 7.490499999999998e-71 4767921000.0 7310840.0 5884864.0 5475793.0 4893281.0 4946858.0 7921260.0 6730720.0 5952790.0 9487280.0 6585290.0 True False 7271479.249750685 6080738.140764592 6246737.057954015 5512769.87288059 5576811.043975454 7373681.94084034 6405129.35975269 6397017.417455136 7149266.967038843 6165011.15424958 1.1794754409711667 0.9863304361701117 1.0132564080842095 0.8942027410738105 0.9045905845817204 1.1960533008537408 1.0389485435622603 1.0376327402174501 1.1596519111098136 1.0 22.555672074198192 2.7504625307228823 24.99913378916322 1.080520235744269 0.9904086969489347 0.19766574972153028 0.09086583107356175 1306.0421433408783 2743248.0340468027 0.028143458066811934 0.029639243516602617 562.9405469284196 -2.7504625307228823 -0.09011153879533418 ISNDNPEEHVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISNDNPEEHVLK 12 0 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 0 ; 148.62 6.6578e-05 450100000.0 821140.0 846250.0 789040.0 746000.0 751960.0 938780.0 926130.0 864220.0 1178960.0 942320.0 False True 816719.0734772314 874416.9196810718 900129.9735413739 840443.5235108974 847717.6487838917 873884.3482504169 881329.5537398305 928712.48482024 888421.1052546254 882180.3308392598 0.9257960588400878 0.9911997458038967 1.0203469087607493 0.9526890298170033 0.9609346515098766 0.9905960467504977 0.9990355972926535 1.0527467597658995 1.0070742615735135 1.0 19.750714068785555 2.161274056827423 2.6484000981040543 1.025436251886076 0.9739850400471647 0.36476056780850175 0.027253029429764195 0.2749312219244041 3.8837420802685156 0.012302624518578147 0.008181081950453849 144.96863738448764 -2.161274056827423 -0.051451211838911326 ISNLLSDYGYHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISNLLSDYGYHLR 13 0 P30876;C9J2Y9;C9J4M6 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2;DNA-directed RNA polymerase 0 ; 157.38 4.0342e-05 897580000.0 815190.0 1121020.0 1002770.0 1113330.0 1047580.0 1130260.0 1168940.0 1017760.0 1249550.0 1100130.0 False True 810801.1076161232 1158332.4730291006 1143951.299766912 1254277.4638477045 1180983.103506874 1052127.786545854 1112393.906415555 1093710.4192805612 941615.145612164 1029918.7615313202 0.7872476334061485 1.1246833403703127 1.110719934906365 1.2178411644650493 1.146675978356726 1.0215638609995925 1.0800792722346448 1.0619385335348133 0.9142615716720578 1.0 19.97409911356942 -0.7164032928946241 8.355041001063297 1.0000160517139522 1.063652316420116 0.008015567969015591 0.11720436833670035 0.0 0.0 0.1102825710520783 0.025993851279203943 0.19213067436740022 0.7164032928946241 0.06363626470616368 ISNLS(ph)PEEEQGLWK ddPTM_BT-474_Trastuzumab_2h_R1 7 ISNLSPEEEQGLWK 14 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK 350.42 7.0845e-82 4482896000.0 6710480.0 5900840.0 5180420.0 5072710.0 5113010.0 7302240.0 6853740.0 6616220.0 8796190.0 7246910.0 True False 6674351.521284414 6097245.892266897 5909778.106982164 5714914.565883331 5764121.516315405 6797453.336424007 6522198.41237064 7109955.932884421 6628486.837407279 6784405.999408198 0.9837783177873813 0.898714772199476 0.8710826132011664 0.8423603431725404 0.8496132921317221 1.0019231362357954 0.9613514304626772 1.0479850311883783 0.9770180083540815 1.0 22.693791077050527 2.727049286013702 24.338929343676064 1.0014901522528732 0.8860447643123637 0.6257322988551112 0.04188795765025488 340.5183844565538 719971.9105702939 0.014144736820047797 0.013448951988054198 533.3954245609856 -2.727049286013702 -0.11544538794050951 ISNYGWDQSDKFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISNYGWDQSDKFVK 14 1 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ; 211.7 3.1663e-09 5622200000.0 2825900.0 2537000.0 2534400.0 2559000.0 2557500.0 3172500.0 3048400.0 2748400.0 4463400.0 3319400.0 False True 2810685.6683870056 2621442.5113511165 2891221.4906002986 2882969.1376198195 2883182.4655098724 2953192.5422617123 2900937.245981124 2953499.564092416 3363454.876495805 3107553.050118685 0.9044690864664914 0.8435712823151957 0.9303852400813805 0.9277296609657918 0.9277983091550945 0.95032731368783 0.9335117371110786 0.9504261122684985 1.0823483371803893 1.0 21.56734758956086 2.1523672932441444 0.4997222090692718 1.0254505412239636 0.885039029152683 0.6023404390882167 0.03720962720491012 0.6741695521825237 0.3611445870749356 0.03640878557298456 0.03095135187869145 142.02581602526325 -2.1523672932441444 -0.14041151207128066 ISPFEHQTYCQR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISPFEHQTYCQR 12 0 P28482;P28482-2;P27361;E9PBK7;E9PQW4;P27361-3;P27361-2;E9PJF0 P28482;P27361 MAPK1;MAPK3 Mitogen-activated protein kinase 1;Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 0 130.36 0.00021785 262610000.0 585150.0 649520.0 636240.0 513310.0 509430.0 572320.0 596160.0 572470.0 684780.0 659790.0 False True 581999.6174162773 671138.8805568683 725817.0617027833 578294.9933691395 574302.8908718254 532756.8654963665 567321.46324764 615190.6183437576 516025.14458188723 617681.6373253621 0.9422323447017263 1.0865449772199522 1.1750666004022088 0.9362347177313355 0.9297716755165784 0.8625104476203465 0.9184690445133064 0.9959671474250216 0.8354225112087514 1.0 19.236503916778755 3.615579554312601 8.365901183110125 0.9259965786578372 1.069532634481438 0.4589902087196466 0.07094286916656214 0.2568377057643889 16.372477738814727 0.018736236536809 0.029059176441689854 4126.478192584252 -3.615579554312601 0.14353605582360074 ISQHEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISQHEAK 7 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 71.223 0.054899 127670000.0 275690.0 319510.0 326980.0 299180.0 321890.0 283330.0 364620.0 348540.0 490760.0 388780.0 False True 274205.7156720383 330144.697202126 373015.9418388908 337056.15732438327 362880.7835084936 263744.0639870796 346981.9376163359 374549.82465025893 369818.773847086 363967.7275486963 0.7533792007296899 0.9070713478517267 1.0248599356627957 0.9260605592546322 0.9970136252257221 0.7246358509953126 0.9533316042970107 1.029074273075892 1.0160757283009574 1.0 18.473451009010336 1.9993872005161675 24.999999811834275 1.0115111096550085 0.8971681093994421 0.28969866033597325 0.0883807749798396 30.750094465927553 1254517.1714073836 0.034085258480280024 0.024878526290893654 99.85899720683686 -1.9993872005161675 -0.11434300025556632 ISQMPVILTPLHFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 ISQMPVILTPLHFDR 15 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 70.942 0.045189 159460000.0 180130.0 197670.0 185310.0 173030.0 164490.0 178390.0 170970.0 176600.0 177340.0 153460.0 False True 179160.20009432462 204249.3264559617 211400.0372566053 194935.5802588343 185436.82649138555 166058.31918489077 162699.5279311748 189778.78875662934 133636.9332342532 143666.05141628385 1.2470600975535524 1.4216951356457412 1.471468277805289 1.3568659981751214 1.2907490994797897 1.1558633201640904 1.1324841625927333 1.3209717040717583 0.93019145383922 1.0 17.132359664696548 1.9714232477278792 0.4777926957104099 0.9905923500976224 1.4034290715676117 0.6166154971102713 0.10381614020952326 0.6811336791435362 0.35455862107963637 0.1092370150976089 0.08815427371521546 93.63177311144314 -1.9714232477278792 0.4128367214699893 ISQMPVILTPLHFDRDPLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISQMPVILTPLHFDRDPLQK 20 1 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ; 233.87 1.0088999999999999e-29 1646870000.0 1681720.0 1829830.0 1675970.0 1557230.0 1630250.0 1987320.0 2122790.0 1757640.0 2472400.0 2070630.0 False True 1672665.8063766558 1890734.7853944055 1911932.0082076136 1754375.1583336107 1837852.6742512088 1849941.2460480835 2020102.537854703 1888804.021915078 1863110.1484626583 1938480.6206444683 0.8628746599594895 0.9753694544368521 0.9863044220539959 0.9050258948425031 0.9480892688213696 0.9543253754236919 1.0421061301005416 0.974373435462628 0.9611187899537771 1.0 20.886494881591563 2.4596445466479984 24.79077734649931 0.9928883429536334 0.9401052695644588 0.34555053705759464 0.03802876647391818 270.240970194132 383335.44682056375 0.013017848076362278 0.010893749558786707 288.16719998313005 -2.4596445466479984 -0.05278307338917454 ISQRDPS(ph)PESNK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISQRDPSPESNK 12 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 IS(0.001)QRDPS(0.856)PES(0.143)NK;ISQRDPS(0.988)PES(0.012)NK 107.7 0.0010815 1282660000.0 995630.0 1135480.0 1063250.0 1101110.0 1065310.0 1322570.0 1197960.0 1170340.0 1837550.0 1341670.0 True False 990269.6387048912 1173273.7653878455 1212946.3580653276 1240510.4131006496 1200970.9139129324 1231143.8488949002 1140010.0981483886 1257676.713666104 1384710.424408494 1256043.471938524 0.7884039532298601 0.9341028329035975 0.96568819882748 0.9876333429655095 0.9561539395283868 0.9801761454918477 0.907619938017707 1.0013003066884774 1.1024382956040455 1.0 20.26045496640785 5.564336537294591 1.0577722238883085 0.986545732943711 1.9702445585857987e-11 0.6338073332715062 0.045933341505915326 5.754078179889307 1.4440943480067758 0.013685912746584733 9.706800241910157 366721.6392817338 -5.564336537294591 -0.9865457329240085 ISQRDPS(ph)PESNKK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISQRDPSPESNKK 13 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 ISQRDPS(0.996)PES(0.004)NKK;IS(0.013)QRDPS(0.985)PES(0.002)NKK 63.827 0.034493 303340000.0 532510.0 488060.0 424170.0 460560.0 463080.0 641550.0 636680.0 606590.0 1082570.0 689290.0 True False 529643.0253274225 504304.78206149954 483889.44904826634 518866.8487777199 522050.4931097993 597201.1585462566 605881.3560462091 651856.8260016076 815785.1291947992 645298.9220691413 0.8207715947039399 0.7815056942051815 0.7498686771344388 0.8040720835453764 0.8090056797799262 0.9254643671669869 0.9389158037076207 1.0101625831195231 1.2641972600527465 1.0 19.29960808999053 2.085651249467673 1.0565142375990637 1.1157190235218102 0.7864085810388287 0.7668492237759554 0.07099754266919417 0.2341268593190281 0.48580039201662084 0.052121138210023 0.025958598003196803 121.8011109346903 -2.085651249467673 -0.32931044248298147 ISRPGDSDDSR ddPTM_BT-474_Trastuzumab_2h_R1 9 ISRPGDSDDSR 11 1 A0A3B3ITJ4;M0R1W6;B4DVF8;M0QYL7;P14866;M0QXS5;P14866-2 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;;;;;;; 136.7 8.5525e-05 34521470000.0 8843360.0 10693690.0 9417590.0 9527780.0 9402770.0 9733570.0 10042880.0 9097920.0 10830130.0 9750540.0 False True 8795748.332349671 11049623.007177886 10743504.812840298 10733995.971094716 10600157.024915835 9060711.2162592 9557067.52687275 9776852.988701666 8161189.57780694 9128252.189342719 0.9635742034623838 1.2104861673386256 1.17695092006588 1.1759092264811342 1.161247170328135 0.9926008866010108 1.0469767189419543 1.0710542156269731 0.8940582938029661 1.0 23.121907219330282 2.7403369361978083 24.98123374394862 1.0145650511375268 1.1459916357027717 0.4351464554878006 0.07679838775481083 157.49317911234164 2214910.8853134294 0.02361120481258989 0.023913234466168665 549.9673864309307 -2.7403369361978083 0.13142658456524492 ISS(ph)KS(ph)PGHMVILDQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 2 IS(0.613)S(0.757)KS(0.63)PGHMVILDQTK;IS(0.214)S(0.834)KS(0.952)PGHMVILDQTK 217.82 7.9108e-15 1760680000.0 2740900.0 1491260.0 1450610.0 1475980.0 1315370.0 2265100.0 2147900.0 2096500.0 4078800.0 1977140.0 True False 2726143.298942616 1540895.6876142947 1654843.279071851 1662838.9166643622 1482874.5726911926 2108518.9684718684 2043997.8712251887 2252951.4758112896 3073634.3931198395 1850957.2324852834 1.4728288969066126 0.832485840607636 0.8940472799849027 0.8983670111230315 0.8011392952068019 1.1391505602972558 1.1042923279651953 1.2171818107251715 1.6605647819279246 1.0 20.819840130554162 1.9286663533012334 1.6734257223009492 1.3309196659584859 0.973798374329377 0.22764176866939678 0.23621501211142318 0.47515729600085643 2.479055717658398 0.1513096698027965 0.07018483946838402 84.85283427409914 -1.9286663533012334 -0.3571212916291089 ISS(ph)PTETER ddPTM_BT-474_Trastuzumab_2h_R1 3 ISSPTETER 9 0 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 1 IS(0.048)S(0.948)PT(0.004)ETER;IS(0.031)S(0.966)PT(0.003)ETER;IS(0.041)S(0.926)PT(0.033)ETER 106.37 0.0030919 1350460000.0 1952480.0 2013230.0 1871150.0 1876160.0 1788700.0 1974430.0 2031130.0 1804980.0 2454270.0 2109320.0 True False 1941968.064620923 2080239.143526764 2134591.655672641 2113681.66363298 2016480.3425444828 1837942.3014082871 1932876.482229904 1939676.773102725 1849448.0440331048 1974701.3917202917 0.983423657249336 1.053444916911985 1.080969337755446 1.0703803990291483 1.0211570979791504 0.9307444199485448 0.9788196282912672 0.9822633342112275 0.93657099336013 1.0 20.913203079193742 2.948786641731114 5.533083440850603 0.967474177979063 1.0496624435465416 0.6110726717268694 0.030886432669662907 0.13786109514372086 9.654260434619836 0.009511931006927259 0.010311379201411008 888.7643823599826 -2.948786641731114 0.0821882655674786 ISSDLDGHPVPK ddPTM_BT-474_Trastuzumab_2h_R1 6 ISSDLDGHPVPK 12 0 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 ;;;;; 126.34 0.00028916 6933940000.0 12258220.0 13804490.0 14373130.0 11690940.0 8663480.0 12921980.0 14968570.0 12043890.0 20903330.0 14166490.0 False True 12192223.105536288 14263964.104659589 16396741.770514458 13171011.805300912 9766722.825530974 12028713.937669016 14244483.083609655 12942666.229434209 15751984.41177154 13262372.479657717 0.919309356168147 1.0755213010747622 1.2363354894204899 0.9931112872529453 0.73642350495822 0.9069805539030872 1.0740524069474247 0.9758937361536267 1.187719952514716 1.0 23.660835543619257 -0.17321170198524483 7.205969468621851 1.0000154157061485 1.0087563292409896 0.0002416115014944875 0.13652484977552742 0.0 0.0 0.13690167921659974 0.03226803524329438 0.6711016367441563 0.17321170198524483 0.008740913534841077 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR ddPTM_BT-474_Trastuzumab_2h_R1 3 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR 34 0 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 ;; 311.9 1.3132999999999994e-104 834508000.0 140027.6 201468.0 238096.9 247315.5 187642.1 184328.5 218962.6 200892.2 272996.6 199017.4 False True 139273.70696012888 208173.7405900224 271618.8739446455 278625.61694217054 211537.20919313782 171586.3046576162 208370.54251963858 215883.7960739218 205720.2458970235 186315.93914463173 0.7475136459045228 1.1173157892220005 1.4578402427169452 1.4954470252052963 1.1353682898215571 0.9209427032671565 1.118372069916608 1.1586974097065168 1.1041473254595182 1.0 17.50739157513222 3.0081259239182416 24.992534237039195 1.0768545328060637 1.2287700729661037 0.09465003173529318 0.20174278728122177 469.8993759995359 1445234.1869556666 0.06248679863006273 0.07456652240548273 1018.886771995358 -3.0081259239182416 0.15191554016004005 ISSIQSIVPALEIANAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISSIQSIVPALEIANAHR 18 0 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 201.12 1.4379000000000003e-15 2219500000.0 1005250.0 1106340.0 1209470.0 1033120.0 1259220.0 1937420.0 1156620.0 960490.0 1313280.0 1308890.0 False True 999837.8456937745 1143163.8581033486 1379752.8630983038 1163912.88607182 1419574.203018316 1803490.7155961187 1100669.871882525 1032166.6410693952 989639.7410504131 1225355.5196028918 0.8159573525386313 0.932924232857596 1.126002079417285 0.9498573005563449 1.1584998641686992 1.4718101699828199 0.8982453290284486 0.8423405489729998 0.8076347845326812 1.0 20.224768956882276 2.0304748276698565 24.99997962954498 0.8669281378613668 1.079270489531015 0.22518249765523635 0.17084370525780304 286.65577281515334 235156.49297018995 0.06727765305393299 0.049687344541997504 107.26914712997012 -2.0304748276698565 0.2123423516696482 ISSLPVSRPIS(ph)PSPSAILER ddPTM_BT-474_Trastuzumab_2h_R1 6 ISSLPVSRPISPSPSAILER 20 1 Q5T5P2;Q5T5P2-3;Q5T5P2-7;Q5T5P2-9;Q5T5P2-2;Q5T5P2-10;Q5T5P2-8;Q5T5P2-6;Q5T5P1;Q5T5P2-4;Q5T5P0 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 ISSLPVSRPIS(0.999)PS(0.001)PSAILER;ISSLPVS(0.002)RPIS(0.787)PS(0.211)PSAILER;ISSLPVSRPIS(0.998)PS(0.002)PSAILER;ISSLPVSRPIS(0.583)PS(0.281)PS(0.136)AILER;ISSLPVSRPIS(0.969)PS(0.031)PSAILER;ISSLPVSRPIS(0.999)PS(0.001)PSAILER 299.89 5.215699999999998e-55 4429590000.0 1285490.0 1461650.0 1380650.0 1499450.0 1378890.0 1493510.0 1499590.0 1340710.0 1699810.0 1502280.0 True False 1278569.064671367 1510300.136663918 1575033.5191750699 1689280.2162579296 1554483.4681786527 1390267.169044378 1427049.102709893 1440760.5881874324 1280914.6017870554 1406403.2042333833 0.9091056254868977 1.073874214818195 1.1199018278926671 1.201135073621181 1.105290050178737 0.988526736045229 1.014679928497293 1.0244292560274542 0.9107733812973424 1.0 20.423578831839592 2.7350993466295694 24.450096239509705 0.994351158807231 1.0901573066651478 0.2826353890252923 0.07405652036961184 310.86677167846597 2195925.543736407 0.024676507259432084 0.024143980397423256 543.3746164306604 -2.7350993466295694 0.09580614785791675 ISSPTETER ddPTM_BT-474_Trastuzumab_2h_R1 4 ISSPTETER 9 0 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 0 ;;; 197.3 6.568100000000001e-05 3771850000.0 1481090.0 1575930.0 1452480.0 1384090.0 1379950.0 1531920.0 1433710.0 1278570.0 1708540.0 1515320.0 False True 1473115.9760045684 1628383.877380196 1656976.558817518 1559315.652086054 1555678.4528955414 1426021.9761517926 1364355.969995933 1373983.3858469063 1287493.2102630597 1418610.9802692768 1.0384213829537297 1.147872038232145 1.1680274450596704 1.0991848179478134 1.0966209020884972 1.0052241213310706 0.961754835520133 0.9685413442846048 0.907573131866406 1.0 20.436047588756395 2.659530899901335 1.826552527816604 0.9560795502790258 1.120422232531257 0.780201957754976 0.03817666479433496 0.15081679682466934 1.0012736240025022 0.014803027804407487 0.01368083235232594 456.59473560318895 -2.659530899901335 0.16434268225223114 ISTCAPSTLHITQNTEQELHS(ph)PTVK ddPTM_BT-474_Trastuzumab_2h_R1 6 ISTCAPSTLHITQNTEQELHSPTVK 25 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 1 ISTCAPSTLHITQNTEQELHS(1)PTVK;ISTCAPSTLHITQNTEQELHS(1)PTVK;ISTCAPSTLHITQNTEQELHS(0.9)PT(0.1)VK;ISTCAPSTLHITQNTEQELHS(0.5)PT(0.5)VK;ISTCAPSTLHITQNTEQELHS(0.999)PT(0.001)VK;ISTCAPSTLHITQNTEQELHS(0.992)PT(0.008)VK 346.64 1.3376999999999995e-102 16936440000.0 6321100.0 6778170.0 7219310.0 6866500.0 7002710.0 8061070.0 7213720.0 5171110.0 7784880.0 6859640.0 True False 6287067.89994023 7003777.290959711 8235726.096632594 7735798.19596189 7894463.610185984 7503827.204617689 6864764.804513499 5557004.486564529 5866400.636047557 6421851.902366726 0.9790116613594246 1.0906164448262223 1.2824534451810354 1.2046055115520367 1.229312623555915 1.1684833781128166 1.068969653751053 0.8653274119442923 0.9135060610609128 1.0 22.61455796403832 1.9589026746423988 3.5543941864219435 0.9163576059877736 1.1656247243130498 0.605753885492856 0.08360012105426232 0.15777624016911196 3.883214348147131 0.04234356599272948 0.024689801117704312 90.97093839894144 -1.9589026746423988 0.24926711832527615 ISVIVETVYTHVLHPYPTQITQSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ISVIVETVYTHVLHPYPTQITQSEK 25 0 P04843 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ; 233.28 1.3528999999999996e-38 398150000.0 143349.0 178737.0 182701.0 133890.0 188462.0 239710.0 195342.0 116461.0 260680.0 177461.0 False True 142577.22491157101 184686.15299620206 208423.71273443976 150840.46027194892 212461.51859820983 223139.4119166443 185892.56118109342 125151.91119697514 196438.90693303908 166135.2870479943 0.8581995278966974 1.111661202612836 1.2545421050389427 0.9079375185861213 1.2788464291564532 1.3431187069378119 1.118922803723158 0.753313238991909 1.1824032715956994 1.0 17.341999007955657 1.960015365334177 24.69126198802704 0.947401312170446 1.1365810756875587 0.11996670398058018 0.17403158157443 731.3025669478229 451591.9972469717 0.07150056354871066 0.04615402685528848 91.204310686057 -1.960015365334177 0.18917976351711274 ISVSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 6 ISVSSPGR 8 0 O75864;O75864-2 O75864 PPP1R37 Protein phosphatase 1 regulatory subunit 37 1 ISVS(0.018)S(0.981)PGR;ISVS(0.078)S(0.922)PGR;ISVS(0.003)S(0.997)PGR;ISVS(0.019)S(0.981)PGR;ISVS(0.05)S(0.95)PGR;ISVS(0.014)S(0.986)PGR 152.37 0.00048061 4974170000.0 7132150.0 8519660.0 7805210.0 7682410.0 7223740.0 7844610.0 8173960.0 7107110.0 9052380.0 7897750.0 True False 7093751.296856354 8803231.732856775 8904115.72389849 8655002.318304751 8143640.470538525 7302330.574925652 7778554.32724048 7637478.637373333 6821542.244677401 7393708.83339605 0.95943070747054 1.1906381399676118 1.2042827117670911 1.170590094001493 1.1014283432091847 0.9876410796625289 1.05205039886155 1.0329698950107717 0.922614400754561 1.0 22.817866800178702 2.8823461873121943 3.9364562742590463 1.0083465934639149 1.1404601101800171 0.43760283016727464 0.07130348345106297 0.2286051581633265 6.168594115746251 0.022398377274907212 0.0240982067233038 762.6867250040507 -2.8823461873121943 0.13211351671610227 ISVYYNEASSHK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISVYYNEASSHK 12 0 Q13509;A0A0B4J269;G3V5W4;G3V2R8;G3V3R4;G3V2N6 Q13509 TUBB3 Tubulin beta-3 chain 0 ;;; 260.7 2.5024e-21 8987060000.0 6028320.0 7207100.0 7396500.0 6891500.0 6771500.0 8310100.0 8464500.0 7804900.0 9824300.0 8811900.0 False True 5995864.194929323 7446983.966716053 8437862.908469494 7763963.193398588 7633810.3871750245 7735642.346871256 8055039.797469899 8387341.27047915 7403232.903875461 8249516.99775285 0.7268139694193713 0.9027175734948597 1.022831144025517 0.9411415475007173 0.9253645260994623 0.9377085166293284 0.9764256258474374 1.0167069505722388 0.8974141038671821 1.0 22.975878222580135 4.680493685132655 3.109921055234361 0.9654929818334663 0.7049873502272119 0.7699087489754524 0.039047333864792026 0.1360408669329734 2.0905282367193982 0.00960495506936945 0.07987556244150375 47917.448541166086 -4.680493685132655 -0.2605056316062544 ISVYYNEATGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 ISVYYNEATGGK 12 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 ;;; 268.91 8.5122e-22 2487840000.0 1531230.0 1485080.0 1442360.0 1360460.0 1406660.0 1720900.0 1791970.0 1628770.0 2226760.0 1702300.0 False True 1522986.0278156446 1534509.9900501815 1645431.750782136 1532694.0965088948 1585789.8130729697 1601938.233562861 1705285.5651098266 1750317.0881264731 1678004.8350552944 1593657.7565876478 0.9556543878509235 0.9628855277784899 1.03248752373618 0.9617460776463769 0.9950629653812717 1.005195894125313 1.0700450319780057 1.0983017406913422 1.0529267203820796 1.0 20.603910408258873 2.3523134621922965 3.30295179564503 1.0678244361160734 0.9832793526112732 0.5340790687348437 0.031636248641565404 0.16245831304005498 3.5144652965695053 0.011707620153227538 0.009402835708569571 225.0678499531762 -2.3523134621922965 -0.08454508350480017 ISWEEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 ISWEEYK 7 0 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 113.89 0.014024000000000002 258440000.0 106440.0 113390.0 110050.0 91607.0 81405.0 95600.0 108540.0 105300.0 156510.0 110240.0 False True 105866.9388665958 117164.11760429745 125544.08342825224 103204.43680732275 91771.44422476283 88991.39701819379 103289.50553693461 113158.02070256569 117940.20762655349 103204.38881878757 1.0257988064100965 1.1352629374126832 1.2164607035141697 1.0000004649854113 0.889220364319008 0.8622830679657452 1.0008247393267014 1.0964458197727938 1.1427828697638038 1.0 16.655144797838176 3.7033457058497223 21.887585219368553 0.9987893900047361 1.1267829698842071 0.29961583381211987 0.08901074862265469 180.1199822508215 111951.92013232961 0.02675890054426334 0.04145950834388371 5050.631765343844 -3.7033457058497223 0.12799357987947102 ISYFTFIGTPVQATNMNDFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 ISYFTFIGTPVQATNMNDFKR 21 1 O43396;K7ER96;K7EME7 O43396 TXNL1 Thioredoxin-like protein 1 0 ; 288.78 2.6264e-46 665750000.0 428080.0 483030.0 472790.0 495810.0 464180.0 488110.0 547800.0 488750.0 745330.0 606920.0 False True 425775.2648441592 499107.3615521986 539354.7224356513 558579.4951634558 523290.57158958865 454368.1045873489 521300.8212007804 525223.0068222124 561653.4084103192 568185.8459896463 0.7493591539623073 0.8784227292442859 0.949257582255014 0.9830929423990518 0.9209848771895037 0.7996821951732119 0.9174829413302206 0.9243859390889917 0.9885029913620093 1.0 19.1160033676065 4.67999719248064 2.7984236970551017 0.9277701108519545 0.7284181812500123 0.5177889522245385 0.05400837952527443 0.31002724216224464 3.605804602049342 0.01376560726170866 0.13198751153512572 47862.69982034099 -4.67999719248064 -0.19935192960194215 ISYT(ph)PPES(ph)PVPSYASSTPLHVPVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 2 IS(0.282)Y(0.063)T(0.658)PPES(0.993)PVPS(0.002)YAS(0.001)S(0.001)T(0.001)PLHVPVPR;IS(0.028)Y(0.097)T(0.876)PPES(0.999)PVPSYASSTPLHVPVPR;IS(0.171)Y(0.079)T(0.752)PPES(0.988)PVPS(0.003)YAS(0.002)S(0.002)T(0.002)PLHVPVPR;IS(0.136)Y(0.237)T(0.626)PPES(0.994)PVPS(0.005)YASSTPLHVPVPR 126.28 0.00023654 2292490000.0 394702.0 498681.0 429509.0 445806.0 412945.0 484686.0 520175.0 399982.0 411047.0 479831.0 True False 392576.9682875146 515279.2956259691 489980.1338408476 502244.993890481 465531.09803322516 451180.7976481191 495012.14798852964 429830.6879074413 309749.9745976101 449207.7747760127 0.8739318202657205 1.1470845443022475 1.0907650342542827 1.1180683463034764 1.0363380247934304 1.004392227790559 1.1019670089979103 0.9568638657729525 0.6895472251166177 1.0 18.777023372196986 1.4938891831360699 5.010901283329117 0.8366094162894989 1.056755160728997 0.4062209566548024 0.10036610281946538 0.13421734095361074 7.425352077733178 0.05674438642709848 0.023809213875435636 31.180938533513512 -1.4938891831360699 0.22014574443949797 ISYT(ph)PPESPVPSYASSTPLHVPVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 IS(0.035)Y(0.032)T(0.918)PPES(0.014)PVPSYASSTPLHVPVPR;IS(0.046)Y(0.073)T(0.88)PPES(0.001)PVPSYASSTPLHVPVPR;IS(0.006)Y(0.002)T(0.992)PPESPVPSYASSTPLHVPVPR 188.55 4.3448000000000005e-17 1556280000.0 516390.0 733230.0 685110.0 659460.0 591670.0 753590.0 755810.0 632070.0 660460.0 742220.0 True False 513609.8136163226 757635.1173031059 781567.5329171284 742947.5683840422 667015.6673971555 701496.0970600472 719248.5828254147 679238.2729864254 497698.4827105845 694850.8841534881 0.739165517853568 1.0903564125504503 1.1247989327512824 1.0692187134353994 0.9599407334852237 1.0095635093199238 1.035112135896106 0.9775309904281363 0.7162666034697684 1.0 19.406343881375015 1.4242727507713684 9.994708620694114 0.853786138494482 1.0114381803183656 0.1893219729252038 0.1183481577052677 0.5152447208112526 90.840457061979 0.07111262062533569 0.02776606660643344 26.5627326247458 -1.4242727507713684 0.1576520418238836 IT(ph)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ddPTM_BT-474_Trastuzumab_2h_R1 4 ITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 33 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 IT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;IT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;IT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;IT(0.787)PEPAVS(0.034)NT(0.085)EEPS(0.013)T(0.015)T(0.015)S(0.015)T(0.015)AS(0.015)NY(0.002)PDVLT(0.005)RPS(0.002)LHR 258.73 3.1419999999999996e-59 7236230000.0 1087440.0 1254491.0 1213554.0 1189903.0 1289473.0 1571716.0 1495080.0 1433805.0 1548263.0 1550201.0 True False 1081585.3438659431 1296245.9745791757 1384411.8547995384 1340544.597796497 1453679.7432447362 1463066.9723414984 1422757.2686397661 1540802.8098142666 1166714.329311293 1451265.8449861528 0.7452703084018787 0.8931829954225539 0.9539340153166408 0.9237071225977124 1.001663305359885 1.0081316096538178 0.9803560619545493 1.061695770721434 0.8039287449243493 1.0 20.46888038791073 5.575839490399291 0.8610349603150949 0.9829686334343578 6.829690139883259e-10 0.5186987170316352 0.06489152561031411 6.086112060405769 1.2163020678904422 0.020238338938613404 7.961590590802486 376564.59987640294 -5.575839490399291 -0.9829686327513888 IT(ph)SPLMEPSSIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 IT(0.659)S(0.341)PLMEPSSIEK 182.33 0.00012629 534720000.0 1009300.0 1064700.0 972640.0 909940.0 909720.0 1155700.0 1149900.0 1131100.0 1343600.0 1096400.0 True False 1003866.0409437713 1100137.8958752595 1109579.257661566 1025138.3107017503 1025567.4496671129 1075809.1792251724 1094274.9439554168 1215508.4256094215 1012487.7833175986 1026426.8133247346 0.9780200866851033 1.0718132862408036 1.081011566784279 0.9987446717035668 0.9991627618779384 1.0481109468881484 1.0661012843291895 1.184213438142975 0.986419850079729 1.0 19.969199332847023 2.242966254076812 3.7196956751554615 1.087168817871957 1.0300086396145423 0.0 0.06042596339898446 0.4266143880325302 12.807738524084215 0.023333857026497255 0.017748538821417213 174.9710725815364 -2.242966254076812 -0.05716017825741471 ITADGAHFELR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITADGAHFELR 11 0 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ; 223.77 6.695000000000002e-12 717490000.0 942910.0 1225280.0 1021410.0 1086970.0 1039910.0 1117670.0 1087560.0 968490.0 1267570.0 1090970.0 False True 937833.4773271489 1266062.7041026002 1165215.6497451267 1224580.2905504538 1172336.374470526 1040408.1036121813 1034950.5679173433 1040763.6416925724 955194.358067793 1021343.3605735906 0.9182352512679554 1.2396053599365195 1.1408657408716465 1.1989898185295145 1.1478376613836672 1.0186663406005634 1.0133228528906388 1.019014448880419 0.9352333357621788 1.0 19.962036529879054 2.685799333130266 4.467437362738837 0.9994417620173703 1.1400724185847333 0.3896333571605666 0.08214790006918016 0.21385131694549372 9.201458087539935 0.025863586257283095 0.02474421850944598 485.06432317134 -2.685799333130266 0.14063065656736295 ITADLLSNGIDVYPQKEFDEDSEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 ITADLLSNGIDVYPQKEFDEDSEDR 25 1 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4 Q9UHD8 SEPT9 Septin-9 0 ;; 251.44 1.7943e-40 1480260000.0 755160.0 688520.0 668920.0 620960.0 634590.0 815890.0 833310.0 755890.0 966610.0 871000.0 False True 751094.302466164 711436.97198087 763098.1216431304 699573.4723315369 715401.2749903846 759489.4446984734 792999.6117466637 812298.3501316466 728401.9174104071 815412.0342993824 0.9211224152603028 0.8724877019900132 0.9358435852603021 0.8579386161900638 0.8773494195545827 0.9314179982038667 0.9725139909518555 0.996181459143645 0.8932930675180235 1.0 19.637169723507473 2.4715781506356933 3.5257476367425533 0.9683512427224186 0.8925784613795924 0.49238945383761434 0.034646186173307864 0.18712789304464217 4.996401015365362 0.01203668389283025 0.01038823776016846 296.19529163921305 -2.4715781506356933 -0.07577278134282617 ITADLLSNGIDVYPQKEFDEDSEDRLVNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITADLLSNGIDVYPQKEFDEDSEDRLVNEK 30 2 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4 Q9UHD8 SEPT9 Septin-9 0 ; 298.18 2.3833e-81 445410000.0 163921.0 145178.0 133910.0 140690.0 142462.0 190142.0 195157.0 176011.0 307672.0 198185.0 False True 163038.46754933512 150010.1619680456 152763.3640334143 158501.33957472938 160603.6912615709 176997.93108612343 185716.51033786178 189145.83458574794 231850.35819357855 185536.66362528497 0.8787398908854596 0.8085203163457241 0.8233594430798835 0.8542858132603005 0.865617005951614 0.9539781929225234 1.0009693324708049 1.0194526024664976 1.2496201756749814 1.0 17.501344778284725 2.238070687355011 1.0470965391187996 1.1051011038651484 0.835235876523241 0.7343215304705735 0.06456738345208078 0.25594364958067845 0.5364076998669494 0.04381085499592289 0.024720047161192162 173.00979333538 -2.238070687355011 -0.2698652273419073 ITAEEMYDIFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITAEEMYDIFGK 12 0 Q9Y3B4 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 0 ; 185.77 2.9351e-05 170086000.0 229850.0 228690.0 242770.0 208790.0 203712.0 251830.0 246190.0 223160.0 326420.0 260910.0 False True 228612.51313873558 236301.8084039758 276949.90580533224 235222.7925922789 229653.515704378 234421.58484405561 234280.84916287014 239813.33238351886 245978.1648039073 244258.50042371074 0.9359449629886601 0.9674251172183052 1.133839376418476 0.9630076013086228 0.9402068517820352 0.9597274380928762 0.9591512629303277 0.981801378324681 1.0070403460973252 1.0 17.898049244637594 4.477620081904525 24.999999999971557 0.9903674749255572 0.9438149602132785 0.10610007891020312 0.05125249857783544 37.40728850841749 1874610.4273757148 0.012982546155468264 0.03646023721821859 30034.477557729097 -4.477620081904525 -0.046552514712278725 ITAHSS(ph)PPLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITAHSSPPLTK 11 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 ITAHS(0.005)S(0.995)PPLTK;ITAHS(0.006)S(0.994)PPLTK 134.61 8.8358e-05 1174360000.0 1806370.0 1870420.0 1651640.0 1579470.0 1554830.0 1909040.0 1882770.0 1766000.0 2379800.0 1996370.0 True False 1796644.7046265732 1932675.7990072337 1884176.5556877656 1779430.7400532903 1752828.3843005737 1777072.5581967854 1791693.2222201414 1897787.8875662973 1793330.1776862286 1868959.957421651 0.9613072219616512 1.0340916033714722 1.0081417465396674 0.9520967707131232 0.9378629955875094 0.9508350091397195 0.9586578969256763 1.0154245841545029 0.9595337613119552 1.0 20.833804228911227 -0.607464366801949 10.998147849470273 0.9999999995894009 0.9775953116466782 0.050395772924339055 0.03074258119225215 0.0 0.0 0.03182506693419341 0.007501240213627978 0.2469082681053447 0.607464366801949 -0.022404687942722656 ITDFENRR ddPTM_BT-474_Trastuzumab_2h_R1 3 ITDFENRR 8 1 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ;; 88.948 0.022854 958080000.0 1029990.0 1253390.0 1104830.0 1174750.0 972250.0 1033590.0 1028220.0 902910.0 1394010.0 1236410.0 False True 1024444.6482826474 1295108.3284597448 1260380.460645488 1323473.229550168 1096060.2745227658 962140.3561091513 978481.0704181576 970289.7290840797 1050474.91427699 1157501.2552561434 0.8850484123716549 1.1188828716847916 1.0888804266277694 1.1433881592269173 0.9469192966708435 0.8312218684343796 0.8453391009080414 0.8382623558100284 0.9075367387351391 1.0 20.14258232734604 3.032334677676544 5.371999507504634 0.8698138879235042 1.0647755523826703 0.5115170113332601 0.07974206186725884 0.12818692905305903 9.815222971790858 0.022792945471059728 0.026908870921445248 1077.2950830920352 -3.032334677676544 0.19496166445916607 ITDLYTDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITDLYTDLR 9 0 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ; 114.64 0.0037354 148460000.0 315600.0 368820.0 346630.0 344660.0 293640.0 342560.0 373950.0 308340.0 403950.0 364840.0 False True 313900.8446664564 381095.95074360195 395432.4910380291 388293.92066121387 331033.3134593623 318879.6334995027 355860.6098722748 331349.89651879476 304401.93515268224 341555.5988447614 0.9190329355693736 1.1157654918630446 1.1577397424474807 1.1368395715793704 0.969193052548433 0.9336097390235872 1.0418819397951522 0.9701199384214891 0.891222208572357 1.0 18.381760915759624 3.2245471137345247 24.963426503514327 0.9699914783521488 1.0901170274594032 0.38356123560319344 0.07090915074470935 232.2531516258217 413731.3149126193 0.02075711297871375 0.02492559021038097 1677.0542583996987 -3.2245471137345247 0.12012554910725437 ITDQEASENHVAATGSHLCVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITDQEASENHVAATGSHLCVLR 22 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 0 158.78 1.1784e-11 158970000.0 63018.0 66210.0 60739.0 72325.0 56427.0 66474.0 74086.0 70810.0 76475.0 71578.0 False True 62678.71808995802 68413.75982520977 69290.52324714774 81481.33758435075 63612.64398096801 61878.808842964514 70502.1771439961 76094.20176589437 57628.76096249869 67009.83075899119 0.9353660109274037 1.020951091061071 1.0340351924833138 1.2159609517207715 0.9493031583643068 0.923428818459772 1.0521169259114465 1.135567735420437 0.8600045741014832 1.0 16.032085142983178 ITDSAGHILYSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITDSAGHILYSK 12 0 P49755;G3V2K7 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 0 ; 126.76 0.00028168 1611050000.0 1531830.0 2219520.0 2285540.0 1884860.0 1837160.0 2292780.0 2233770.0 1817750.0 2876600.0 2216440.0 False True 1523582.7974823134 2293395.3814718276 2607324.1657301937 2123483.0827409527 2071111.4362995594 2134285.5152235767 2125714.011269929 1953399.7353474733 2167700.474465171 2074984.9016102476 0.7342621126062023 1.1052588284821192 1.256550909699071 1.0233727874805592 0.9981332561467401 1.028578816919251 1.0244479415827623 0.9414043127887722 1.0446825289104384 1.0 20.98466940821686 3.4847571183955086 24.69789187908606 1.002166991074385 1.0561164833780237 0.0 0.12365024525885154 1248.5865299980414 4038504.536289821 0.034093315696902195 0.048222208519499446 3053.213109241769 -3.4847571183955086 0.05394949230363877 ITEAEKNER ddPTM_BT-474_Trastuzumab_2h_R1 5 ITEAEKNER 9 1 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;;; 192.12 3.2021e-05 4112820000.0 2456120.0 2402240.0 2370020.0 2213890.0 2285200.0 2932340.0 2978760.0 2445420.0 3920670.0 2889990.0 False True 2442896.5228205863 2482197.106215253 2703698.2154168673 2494168.247004742 2576206.6745584216 2729634.237785877 2834665.9988317615 2627909.6579911513 2954473.412786401 2705548.3639550833 0.9029210327068257 0.9174469542975288 0.9993161650470327 0.9218716176851715 0.9521939097005885 1.008902400027913 1.0477232773203613 0.9713038927715059 1.0920053960770557 1.0 21.367489600263653 2.7470428038444092 3.3957790041616613 1.0211849724569682 0.9385617242178913 0.5613946332825135 0.03793103808426278 0.1979412644605557 4.849157929343792 0.012318441487532614 0.012388971615759926 558.5252399892429 -2.7470428038444092 -0.08262324823907685 ITEFCHR ddPTM_BT-474_Trastuzumab_2h_R1 6 ITEFCHR 7 0 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 P4HB Protein disulfide-isomerase 0 ;;;;; 186.43 0.00059898 15748170000.0 9722700.0 12808900.0 11447720.0 10631470.0 10010410.0 10428590.0 10927380.0 9854540.0 13618290.0 9957320.0 False True 9670354.063493516 13235236.493356442 13059459.470634017 11977413.01193082 11285176.377151394 9707686.119560303 10398780.882754637 10589935.815140173 10262244.905236823 9321835.312709445 1.0373873533582918 1.4198101606999474 1.4009536783844136 1.2848771309659102 1.2106174372942546 1.0413921501407333 1.1155293495237872 1.1360354972911602 1.10088245082438 1.0 23.152182594576473 3.009229273597451 3.0618749817697664 1.094567172400118 1.3032667925264318 0.4626605250495527 0.10425845709362938 0.22684150080481785 4.376692132112743 0.03207443514007036 0.03727965680443985 1021.4786023826039 -3.009229273597451 0.20869962012631382 ITELKEEIEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITELKEEIEVK 11 1 Q9NQP4;E9PQY2 Q9NQP4 PFDN4 Prefoldin subunit 4 0 ; 171.57 1.3112e-05 1398310000.0 1747420.0 1356230.0 1248660.0 1142820.0 1159760.0 1719270.0 1723100.0 1592890.0 2702100.0 1690830.0 False True 1738012.0848766125 1401371.2956916522 1424460.474452717 1287500.8948240262 1307448.5615639212 1600420.9116262533 1639747.0701187756 1711759.5403315283 2036203.6612849636 1582919.7818076084 1.0979786245970704 0.8853078417475851 0.8998942908061079 0.8133709045911158 0.8259727224274662 1.0110562329309318 1.0359002957473142 1.0813937383338477 1.286359349783177 1.0 20.594156714678764 2.1584072125105065 1.6277897895840094 1.1315035284596198 0.9012408325634788 0.4623942056743763 0.10040908764023868 0.32640238512047237 1.6770112958926962 0.057756155274848654 0.03263213154569372 144.01482881232658 -2.1584072125105065 -0.230262695896141 ITESEEVVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 ITESEEVVSR 10 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;; 239.6 7.0477e-12 2622710000.0 782610.0 852160.0 824050.0 815360.0 740040.0 808900.0 832300.0 769050.0 908400.0 795970.0 False True 778396.5147161452 880523.6304584013 940069.0772289978 918584.4923992563 834279.7074392671 752982.6469457827 792038.4693052386 826440.4161567718 684536.991936369 745170.5131357972 1.044588454581392 1.181640463406176 1.2615489484051592 1.2327171784263244 1.119582287184827 1.010483686179571 1.0628956129412763 1.1090621563633507 0.9186313466104924 1.0 19.50721106149894 2.965375899153124 4.275903805553372 1.0381829665503102 1.185838396640475 0.5254354284360376 0.07087542745191142 0.18821284101244887 7.759290526096069 0.022542056866488528 0.025087833290789268 923.3702951069345 -2.965375899153124 0.1476554300901649 ITEYLCEPLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITEYLCEPLRK 11 1 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;K7ERB2;K7EN71;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 129.84 0.00037947 2066380000.0 1980660.0 2342470.0 2016740.0 1961390.0 1672770.0 2109440.0 2312280.0 2052090.0 3263500.0 2393170.0 False True 1969996.346632014 2420437.6978969835 2300679.4621816757 2209701.7728941534 1885787.344215423 1963619.3778876432 2200426.182632605 2205227.3761018775 2459254.153659556 2240435.841704083 0.8792915690607895 1.0803423391298679 1.0268892415289033 0.9862821026883085 0.8417055775991723 0.8764452618264255 0.9821420197236951 0.9842849927023904 1.0976677429821151 1.0 21.09534798263421 1.4750728796348809 3.4609724373431288 1.0485777365241662 0.9557637464337615 0.20784971687273335 0.07250555702166502 0.3721819057399327 8.791952792245198 0.05529694473649869 0.020144024087602467 29.858836426726167 -1.4750728796348809 -0.0928139900904047 ITFDAFPGEPDKELNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 ITFDAFPGEPDKELNPK 17 1 Q12904;Q12904-2 Q12904 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 107.03 0.00066065 480080000.0 435560.0 407770.0 292690.0 305830.0 328590.0 442550.0 449770.0 374620.0 567300.0 426230.0 False True 433214.9933552648 421342.3779478296 333898.2078929141 344548.0466425439 370433.9887944829 411957.56015064503 428012.9068117474 402576.04668181564 427496.51643053984 399027.6364861383 1.085676664328773 1.0559227968724079 0.8367796547458269 0.8634691313029219 0.9283416859457335 1.0324035793068582 1.0726397564360584 1.0088926426924332 1.0713456345908776 1.0 18.606129144796068 2.7251130703250426 18.87136876750608 1.0381689260607379 0.9481523224949577 0.23621885816893307 0.07425034382195358 47.399593617574155 66515.13547330754 0.026156463280814 0.024918215439082562 531.0226801377779 -2.7251130703250426 -0.09001660356578012 ITFHGEGDQEPGLEPGDIIIVLDQK ddPTM_BT-474_Trastuzumab_2h_R1 3 ITFHGEGDQEPGLEPGDIIIVLDQK 25 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 ;; 222.78 1.0005e-33 1146400000.0 598391.0 595228.0 519454.0 496628.0 500925.0 658616.0 604514.0 587023.0 868750.0 670800.0 False True 595169.3293434896 615039.8041570757 592588.6080248926 559501.0538795834 564714.8295349098 613087.4261352998 575271.3483522609 630829.6371023942 654658.2031535902 627988.9696992269 0.9477385082552388 0.9793799474720819 0.9436290072239817 0.8909408936713561 0.8992432300289892 0.9762710106658974 0.9160532686231496 1.0045234351879266 1.0424676781618258 1.0 19.260379693585595 1.6239573326128967 4.727848956113748 1.0217482355910896 0.9366469476534666 0.6128170367530543 0.029075198321623145 0.10601075968086869 5.257680632597581 0.017139153706231328 0.007947110466820152 42.06852960054266 -1.6239573326128967 -0.08510128793762306 ITGEAFVQFASQELAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITGEAFVQFASQELAEK 17 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ; 193.47 2.9878e-10 201618000.0 218510.0 202249.0 193074.0 207239.0 201410.0 249950.0 243630.0 221743.0 316080.0 239480.0 False True 217333.56643874312 208980.73570289748 220257.14097070767 233475.43615130687 227058.36964940088 232671.54481901167 231844.68614301967 238290.58864813874 238186.319255006 224196.18137085697 0.9693901346126768 0.9321333415452305 0.9824303858519629 1.0413889956720561 1.0127664452670109 1.0378033354374359 1.0341152321390827 1.062866402055115 1.062401321015397 1.0 17.774402180036688 3.8842923152000375 3.009914895725825 1.0392798684589701 0.9508360579892496 0.7446525130033587 0.020423980477543926 0.11900151228671811 2.053235437631946 0.005498369437673532 0.011386945734139573 7661.1208861259565 -3.8842923152000375 -0.0884438104697205 ITGMLLEIDNSELLHMLESPESLR ddPTM_BT-474_Trastuzumab_2h_R1 4 ITGMLLEIDNSELLHMLESPESLR 24 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YB75;H0YAS6;H0YAS7;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0Y6X6;H0YER0 P11940-2;B1ANR0 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 ;;; 234.64 1.7547999999999994e-37 812596000.0 237668.1 213367.7 227148.2 252148.6 258972.0 269992.0 238065.9 259366.3 310696.0 279818.0 False True 236388.52135700852 220469.5149110017 259128.6921524521 284070.58690662176 291950.5491526972 251328.08853280474 226549.74291694598 278721.53034138493 234129.13391310236 261959.77567575773 0.9023848060154083 0.8416159097032101 0.9891926784713321 1.084405367861636 1.1144861778858015 0.9594148104779552 0.8648264502919688 1.0639859864835668 0.8937598656478355 1.0 17.99898577517554 4.195874683327874 7.689466553553171 1.0011644682807308 0.8721562273191678 0.2988929437340472 0.07586294853027471 0.2357023645459413 35.98311926154305 0.01949178590721228 0.04309712659331285 15699.097379025607 -4.195874683327874 -0.12900824096156305 ITHEVDELTQIIADVSQDPTLPR ddPTM_BT-474_Trastuzumab_2h_R1 5 ITHEVDELTQIIADVSQDPTLPR 23 0 P36954;K7EKS1 P36954 POLR2I DNA-directed RNA polymerase II subunit RPB9 0 ;;;; 164.65 1.4052e-11 559178000.0 191348.0 232192.0 231090.0 221356.0 209666.0 217747.0 224549.0 197927.0 244368.0 232688.0 False True 190317.80362876147 239920.370356972 263625.4633297119 249379.64690385785 236365.72231225538 202694.66241130335 213686.7070095181 212697.31779294106 184146.78076343745 217837.65262578076 0.8736680795753197 1.1013723636157922 1.2101923618438415 1.144795878480487 1.0850544865092888 0.9304849734104909 0.9809447743940141 0.9764029093644789 0.8453395386140145 1.0 17.732893815826717 2.757958367556659 9.608585029779068 0.9506543716830305 1.0946246354005011 0.36280514155218435 0.08963518788827744 0.42390446372081203 202.25746378400189 0.02831510578661455 0.02949807394152802 572.7411241050659 -2.757958367556659 0.14397026371747068 ITHISGTLEDEDEDEDNDDIVMLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 ITHISGTLEDEDEDEDNDDIVMLEK 25 0 H3BUW8;E7EN44;Q86WA8-2;Q86WA8 H3BUW8 LONP2 Lon protease homolog 2, peroxisomal 0 235.76 2.0235999999999998e-38 232950000.0 52305.0 81127.0 84529.0 84892.0 89098.0 97016.0 95441.0 85851.0 97881.0 81207.0 False True 52023.39569163183 83827.2631526929 96429.94846076092 95639.31849582722 100444.10217477959 90309.51227109916 90824.15420997384 92257.63756254475 73759.53908820308 76024.29973518946 0.6842995709640414 1.1026377545690391 1.2684095584786594 1.2580098577555003 1.3212104882866407 1.1879032439058097 1.1946726839488921 1.2135282782465584 0.970210042645903 1.0 16.21417300210809 4.719378602627848 3.2787145719779844 1.1944276836786716 0.6244994955957774 0.64997109316717 0.10706183766556976 0.16958215375364458 3.0058597122123034 0.02514157011282125 0.23872007635991246 52405.709201751575 -4.719378602627848 -0.5699281880828941 ITHQEVDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITHQEVDSR 9 0 Q8WTS6;D6RJA0 Q8WTS6 SETD7 Histone-lysine N-methyltransferase SETD7 0 ; 120.09 0.00072136 876330000.0 799120.0 975760.0 993930.0 954950.0 815000.0 872130.0 953820.0 803790.0 997700.0 922510.0 False True 794817.6267105787 1008237.5817406229 1133866.7046055687 1075846.5720867713 918785.4191165374 811841.7058731933 907680.0826537582 863772.8913629183 751830.2034950642 863634.6219994534 0.9203170026584249 1.1674353436715985 1.312900937181611 1.2457195956271565 1.063858946494527 0.9400291340725189 1.05100010992187 1.0001601016910888 0.870541991188885 1.0 19.720061554742237 3.0210524752114374 5.294037820356792 0.9825671205202352 1.1721919734761483 0.4199916370264064 0.10414203780845613 0.17960804047180698 14.565413800965588 0.03209544641689895 0.0375531583753661 1049.6692510979242 -3.0210524752114374 0.18962485295591314 ITITNDKGR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITITNDKGR 9 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931;P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13;P54652;P17066 A0A0G2JIW1;Q53FA3;P11142;P54652;P17066 HSPA1B;HSPA1A;HSPA1L;HSPA8;HSPA2;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 0 116.13 0.0012435 1038500000.0 552700.0 591780.0 613350.0 600850.0 563290.0 687170.0 656030.0 351680.0 835640.0 576270.0 False True 549724.3246107431 611477.0395614365 699704.3486662299 676917.5483934608 635021.6426185941 639667.5553241854 624295.3226220312 377924.147394856 629707.7190023194 539491.9552304316 1.0189666764835092 1.1334312469965526 1.2969690129436076 1.2547314966065268 1.177073423360612 1.1856850674464017 1.1571911621098738 0.7005185966738546 1.167223557084098 1.0 19.041241921201642 1.9247122890153505 12.580855096081118 0.923990259812147 1.1835689693755873 0.3757326968669623 0.12745894466758098 1.0804725104144706 179.07845372896622 0.05158240142368929 0.033069283743541796 84.08379196070052 -1.9247122890153505 0.2595787095634403 ITITNDQNR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITITNDQNR 9 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 119.07 0.0020641 113500000.0 120070.0 130020.0 145410.0 103080.0 84968.0 107100.0 114940.0 94958.0 209760.0 108510.0 False True 119423.55646103113 134347.63710125038 165882.46407362263 116129.91743096952 95788.17115520738 99696.42908628183 109379.91308656044 102044.24814695373 158067.45863999648 101584.7988999151 1.1756045959070254 1.3225171340213449 1.632945734696545 1.1431820379482642 0.9429380398693434 0.981410901689201 1.0767350457062514 1.004522814948832 1.5560148797039022 1.0 16.632325008510815 3.5001354975001586 23.969002857412423 1.0782835556878285 1.374320693536494 0.299548881313491 0.19405151524576533 521.1542555413936 542772.8361192354 0.05101213944553436 0.07835385563619211 3163.2644274067125 -3.5001354975001586 0.2960371378486655 ITKPGS(ph)IDSNNQLFAPGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 ITKPGSIDSNNQLFAPGGR 19 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 ITKPGS(1)IDSNNQLFAPGGR;ITKPGS(1)IDSNNQLFAPGGR;ITKPGS(1)IDSNNQLFAPGGR;ITKPGS(1)IDSNNQLFAPGGR 298.15 5.3254e-50 3792150000.0 2692870.0 2357240.0 1783930.0 2163340.0 2328350.0 2525050.0 1784530.0 1766170.0 3399750.0 2336960.0 True False 2678371.8871259848 2435699.3084183275 2035091.8378024702 2437218.622187755 2624851.571288335 2350499.236828345 1698205.4663333858 1897970.5738295363 2561927.1668160195 2187813.212027883 1.2242232894477325 1.1133031353077345 0.9301945095743088 1.1139975793128603 1.1997603620170851 1.074360107117951 0.7762113589026733 0.8675194771633672 1.1709990380949251 1.0 21.061058140368583 2.450966460844863 23.997239041543914 0.9282289176286346 1.1088026263051285 0.28197764119084345 0.12017767455971629 166.568094549844 152826.0396644084 0.04285165287060086 0.0358535385821564 282.46618270152044 -2.450966460844863 0.18057370867649392 ITKPGSIDSNNQLFAPGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITKPGSIDSNNQLFAPGGR 19 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 263.52 2.6015e-31 1485400000.0 697760.0 799120.0 685890.0 709280.0 687550.0 817910.0 792630.0 726290.0 962970.0 873900.0 False True 694003.3376884245 825718.226121759 782457.3501372462 799074.7752758824 775105.4170718715 761369.8068530423 754287.4587593548 780489.4478258912 725658.9466369059 818126.9538165681 0.8482831844750914 1.009278843912644 0.9564008941241662 0.9767124424249719 0.9474145955661272 0.9306255017039186 0.9219687179851469 0.9539955188921503 0.8869759677904532 1.0 19.64196520688275 2.9898481470713842 23.1108415774423 0.9363339491139845 0.953864544593016 0.0007541387552519874 0.04667663369524268 787.9901310516659 1793885.1941397374 0.01297254600436235 0.014629524725411704 976.8955855000241 -2.9898481470713842 0.017530595479031463 ITKPGSIDSNNQLFAPGGRLS(ph)WGK ddPTM_BT-474_Trastuzumab_2h_R1 1 ITKPGSIDSNNQLFAPGGRLSWGK 24 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 ITKPGSIDSNNQLFAPGGRLS(1)WGK 200.48 7.9667e-25 1811400000.0 939330.0 781010.0 832730.0 804450.0 883350.0 900810.0 1011600.0 1003900.0 1383800.0 1106300.0 True False 934272.7516493737 807005.445719485 949971.1457810872 906293.2875178828 995839.3864743474 838539.1249786518 962665.0433127242 1078816.1157009082 1042781.0319700001 1035694.986848918 0.9020732585487166 0.779192190718991 0.9172306111776751 0.8750581001412999 0.961518013623074 0.8096390690563163 0.9294870164831193 1.0416349691748392 1.006841826223994 1.0 19.982167759848302 1.9291612517374854 4.44444906811025 1.0165631411704632 0.875145029883414 0.6198041117582649 0.04965607460931655 0.13987359272057295 5.0802851643098315 0.0222739130205691 0.013114864537433704 84.94958307615212 -1.9291612517374854 -0.14141811128704918 ITLDNAYMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITLDNAYMEK 10 0 P14618;P14618-3;B4DNK4;H3BUW1;H3BTJ2;H3BT25;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ; 131.82 0.00055844 947450000.0 1258870.0 1313550.0 1172170.0 1095060.0 1121240.0 1368870.0 1478100.0 1187360.0 1760030.0 1354600.0 False True 1252092.3837936043 1357270.7176922562 1337201.3473157159 1233694.4837209682 1264023.267889849 1274243.2388733758 1406598.6561096644 1275966.832491912 1326294.1896937122 1268148.2682685934 0.987339110988252 1.0702776257742654 1.0544518971282442 0.972831422468711 0.9967472254767368 1.004806197159504 1.1091752370802017 1.006165339194914 1.045851043509688 1.0 20.27429200044085 ITLPVDFVTADKFDENAK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITLPVDFVTADKFDENAK 18 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 264.38 5.3166999999999995e-31 7409400000.0 5214700.0 4054100.0 3588700.0 3110700.0 3382100.0 5290900.0 4878200.0 4475700.0 7082800.0 5010700.0 False True 5186624.634607633 4189038.2677448 4093957.7664604196 3504514.30105274 3812790.3877227516 4925152.536438929 4642222.829466315 4809699.461144097 5337338.844657548 4690912.836123902 1.1056749114301039 0.8930113208426612 0.8727422379144554 0.7470857855351918 0.8128035034804137 1.049934779966745 0.9896203557050487 1.0253227099223503 1.1378038840448348 1.0 22.161437263067874 2.7265759356987105 24.64987822811703 1.0364323713450987 0.8781551458230581 0.40290495859992237 0.09357664030316099 659.6224924586958 1356697.3120152121 0.03153188772189926 0.029944848314414848 532.8143779245192 -2.7265759356987105 -0.1582772255220406 ITLQDVVSHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITLQDVVSHSK 11 0 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 165.7 2.1291e-05 1252070000.0 1347110.0 1290760.0 1151350.0 1168520.0 1118060.0 1445240.0 1397300.0 1194510.0 1771890.0 1438200.0 False True 1339857.309437992 1333722.1663191032 1313450.0722863998 1316454.5121889461 1260438.3137391862 1345333.9605290208 1329707.2607956382 1283650.4017988774 1335231.4516095694 1346412.8446950323 0.9951311105781042 0.9905744523858849 0.9755180793628727 0.9777495196780659 0.9361454911139683 0.9991986973607223 0.987592524859507 0.9533854395823363 0.991695420071549 1.0 20.360689414391537 ITNFFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITNFFR 6 0 P42574;A8MVM1 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 0 138.48 0.028581 356170000.0 343790.0 377950.0 369470.0 340820.0 319140.0 378490.0 344350.0 322380.0 426950.0 360420.0 False True 341939.07283865986 390529.8372744007 421488.16450919013 383967.7770549386 359780.5873090208 352325.8771696249 327692.47495525563 346437.63261247013 321733.8933368922 337417.6870289136 1.0133999668172666 1.1574077242753902 1.2491584783849001 1.1379598397342938 1.0662766094955507 1.0441831910827895 0.9711775272977181 1.0267322844364812 0.9535181637035007 1.0 18.36417607438151 2.898986404482254 1.78837447022466 0.9955010515657553 1.1482723924696345 0.5698318372668232 0.05781479939856492 0.25820514753343043 1.6525502675014279 0.02141785649836594 0.023545035274732076 792.4765217442193 -2.898986404482254 0.15277134090387923 ITNQVHGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITNQVHGLK 9 0 P51665 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 ; 123.88 0.00054522 1123090000.0 1945180.0 2156080.0 2087650.0 1912080.0 1773300.0 2190770.0 2294030.0 2044570.0 2765700.0 2345900.0 False True 1934707.3670098167 2227843.8194221198 2381572.9738209103 2154149.1319500203 1999119.2438274326 2039327.22641787 2183059.0048543755 2197146.195516094 2084130.2934813036 2196182.653573967 0.8809410109224579 1.0144164538394058 1.084414800356085 0.9808606440108507 0.9102700272102403 0.9285781504098315 0.994024336410164 1.0004387348841677 0.9489785788489338 1.0 21.06656661567413 -1.5631071284881402 2.9946601525901344 1.0011673470071263 0.9760956008132269 0.017351521689191518 0.055243925742531085 9473322.577592136 5194681.8193924865 70607.22701459785 0.013317772917990614 0.027345940940517274 1.5631071284881402 -0.025071746193899402 ITPFNLQEEMEEGHFDADGNYFLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITPFNLQEEMEEGHFDADGNYFLNR 25 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 0 ; 268.97 6.5733e-46 357520000.0 55001.0 61711.0 51955.0 65388.0 63432.0 64330.0 68936.0 62104.0 75163.0 67285.0 False True 54704.88072718554 63765.01332991273 59269.812399044524 73666.11409561735 71509.68920908008 59883.018516531374 65601.30231890659 66738.51583772214 56640.085782599446 62990.813694413344 0.8684580737847702 1.0122906752602887 0.9409278738099738 1.1694739244517935 1.135239966195615 0.9506627237273234 1.0414423702662023 1.0594960109816962 0.8991800940590621 1.0 15.942853827148518 4.992910733787716 1.4202724746650845 1.0362154761092233 0.7095515774380663 0.2504133203390291 0.07992277732988207 3.091191706638984 3.5570053571720393 0.02166465179737904 1.7013274134710843 98380.88699023038 -4.992910733787716 -0.32666389867115697 ITPHTS(ph)PAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITPHTSPAPR 10 0 A0A0C4DFZ9;Q58A45-2;Q58A45-4;Q58A45-3;Q58A45 A0A0C4DFZ9 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 1 ITPHT(0.172)S(0.828)PAPR;ITPHT(0.138)S(0.862)PAPR 148.18 1.6469e-05 1282510000.0 322750.0 392670.0 389820.0 376530.0 373110.0 392580.0 405850.0 387400.0 418880.0 383810.0 True False 321012.34986089566 405739.78357597196 444703.26762381877 424198.65939350915 420623.34690376895 365441.8686339169 386217.4850024404 416309.7551773407 315652.63670443225 359314.9172037267 0.893401121108718 1.129203838052521 1.2376420970345576 1.1805762552101176 1.1706258960166722 1.017051759158433 1.0748718366831964 1.1586208510828364 0.8784846428334103 1.0 18.454889305488287 2.7361990056858185 24.91009148057126 1.0497748414373813 1.1323205452930907 0.14497732465887392 0.10832669638048155 461.4803251652465 4867651.61604448 0.035242809711748854 0.03473934670655097 544.7522161197234 -2.7361990056858185 0.08254570385570936 ITPLEIEVLEETVQTMDTS ddPTM_BT-474_Trastuzumab_2h_R1 7 ITPLEIEVLEETVQTMDTS 19 0 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 0 ;;;;;; 169.62 3.2052e-11 551188100.0 218673.0 244354.0 223512.0 238714.0 228126.0 250716.0 237749.0 238224.0 276650.0 250010.0 False True 217495.68886485437 252487.1751748877 254980.54679886904 268935.1679241019 257176.49389126277 233384.59304198195 226248.17258062135 256001.484556961 208473.3144200756 234054.14775567024 0.9292537259023442 1.0787553973982966 1.0894083665846586 1.149029703181522 1.098790584816852 0.9971393170336497 0.9666488492090404 1.0937703390935059 0.8907054902428024 1.0 17.836482806218207 2.7288068059768524 23.73030753655194 1.0016217204609439 1.0751614889142174 0.2306237237584421 0.07039844879054576 572.388018809668 1392575.1713768335 0.02294754396831574 0.021912703252475126 535.558363692009 -2.7288068059768524 0.07353976845327348 ITPPAAKPGS(ph)PQAK ddPTM_BT-474_Trastuzumab_2h_R1 5 ITPPAAKPGSPQAK 14 1 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK 174.65 1.5188e-06 14387600000.0 8775680.0 6432800.0 6209220.0 5675620.0 5386360.0 7778710.0 7871590.0 7089350.0 11897480.0 7835790.0 True False 8728432.713949716 6646911.85929028 7083424.204492263 6394152.910065564 6072281.018543007 7240986.086813747 7490811.119306049 7618393.295989869 8965505.472064205 7335703.173642676 1.1898563106139768 0.9061042550321233 0.9656094360446784 0.8716482603930704 0.8277708182578638 0.9870882061900692 1.02114425052266 1.0385361996874278 1.2221739702169847 1.0 22.80650383331475 1.845295385884787 1.791187221413904 1.1049342631693513 0.9469950312484499 0.23511435852940854 0.10478594935504322 0.4582848532673143 2.789855684228652 0.07031201478203167 0.03102036418250552 70.03181562422766 -1.845295385884787 -0.15793923192090142 ITPSYVAFTPEGER ddPTM_BT-474_Trastuzumab_2h_R1 4 ITPSYVAFTPEGER 14 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;; 201.6 4.0972e-08 1132930000.0 375589.0 506801.0 442933.0 430426.0 462509.0 451631.0 451802.0 477281.0 633570.0 442738.0 False True 373566.87055586086 523669.56491732603 505294.11635734775 484917.88746742776 521406.7796443812 420410.8119950187 429946.6112087531 512898.13180381083 477435.16290304466 414482.0817929279 0.9012859348223696 1.263431129886448 1.2190976125471906 1.1699369134844508 1.257971822060265 1.0143039481379867 1.0373104896330625 1.2374434368433105 1.151883721578024 1.0 18.660950209288742 2.743561422853827 24.94088549234242 1.1095777305577637 1.1715353198198133 0.07524224392412826 0.11647400352455235 1316.5266035225497 6566003.270480115 0.036181358089275736 0.03737132124076615 554.0659006844019 -2.743561422853827 0.06195758926204964 ITRPGNTDDPSGGNK ddPTM_BT-474_Trastuzumab_2h_R1 3 ITRPGNTDDPSGGNK 15 1 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5;Q8WVV9-3;Q8WVV9-2;H7BXH8;C9JJZ7 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 ;; 112.24 0.00071107 499940000.0 1201110.0 1125170.0 1061500.0 998260.0 1013830.0 1342990.0 1304540.0 1223580.0 1669790.0 1357150.0 False True 1194643.3572158667 1162620.6032703712 1210949.9732765998 1124639.6136460972 1142935.2410587985 1250152.2623584096 1241434.4163732508 1314889.7528133462 1258292.628539663 1270535.5250854283 0.9402675750727563 0.9150634360988835 0.9531020182967161 0.8851697504251042 0.8995696841943478 0.9839569517541447 0.9770953994299209 1.0349098682029656 0.9903639872289741 1.0 20.27700528406849 2.5517070064839844 2.950439620370785 1.0053145503130005 0.9186717133490923 0.7448375746968106 0.022963004855070395 0.13051536821488274 2.2298653517816738 0.008390188712176961 0.007535567252381803 356.2107374414265 -2.5517070064839844 -0.08664283696390829 ITS(ph)PLMEPSSIEK ddPTM_BT-474_Trastuzumab_2h_R1 6 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 IT(0.01)S(0.986)PLMEPS(0.004)SIEK;ITS(1)PLMEPSSIEK;IT(0.021)S(0.979)PLMEPSSIEK;ITS(1)PLMEPSSIEK;ITS(1)PLMEPSSIEK;IT(0.021)S(0.979)PLMEPSSIEK 226.23 1.1674e-11 1600321000.0 3133120.0 3098120.0 2857520.0 2654370.0 2668350.0 3390060.0 3431010.0 3200060.0 3850010.0 3063740.0 True False 3116251.630042357 3201239.051346909 3259833.977990906 2990412.9698413117 3008148.555950446 3155713.1315428624 3265038.938568984 3438864.726775421 2901226.6229909086 2868209.49020022 1.0864797849284091 1.1161106126608071 1.1365397085285245 1.0426061903980943 1.0487896948351765 1.1002380203834319 1.1383544157860876 1.1989587017701993 1.0115114090876198 1.0 21.451718969736184 2.4746415089539506 24.782147176717253 1.1157275016393615 1.0867931100345412 0.0 0.06198736978611371 265.9589462948334 2657908.514940717 0.021659919474016867 0.018240773789657688 298.29193333160686 -2.4746415089539506 -0.028934391604820364 ITSAPDMEDILTESEIKLDGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITSAPDMEDILTESEIKLDGVR 22 1 C4P0D6;C4P0D8;Q99598;C4P0D4 C4P0D6 DISC1;TSNAX Translin-associated protein X 0 84.166 0.0030394000000000003 27684000.0 24957.0 26884.0 24651.0 23484.0 25270.0 25878.0 31820.0 24699.0 41075.0 30314.0 False True 24822.63428498336 27778.817688278814 28121.646529666934 26457.071992131227 28487.984712975365 24089.114770259595 30280.745035795648 26542.1647989807 30952.616626801366 28379.334566878893 0.8746728795379682 0.9788396420224407 0.9909198703512695 0.9322654105853803 1.0038284951974623 0.848825919913346 1.0669998256807565 0.9352638179880959 1.0906745030916163 1.0 14.792553141311588 1.693638251536658 1.4020067837842236 1.0282623129487054 0.9493739414323711 0.20478510458930055 0.06484835902596918 0.6628676963970557 2.5072561348939315 0.04911558327197068 0.018504093359942048 49.389911906112545 -1.693638251536658 -0.07888837151633432 ITSAVWGPLGECIIAGHESGELNQYSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 ITSAVWGPLGECIIAGHESGELNQYSAK 28 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 78.921 0.0066826 76351000.0 30816.0 38616.0 47201.0 37680.0 35134.0 46858.0 52386.0 45197.0 45976.0 50378.0 False True 30650.09007997945 39901.31021613504 53846.49052155328 42450.284136582566 39608.10664446679 43618.81675186738 49851.88904604619 48569.82964571564 34645.830846836754 47162.832909224264 0.6498780541655038 0.846032940661862 1.1417145069549417 0.9000791835021428 0.8398161052094074 0.9248557404476071 1.057016425243107 1.0298327443391593 0.7346002924277394 1.0 15.525362758200881 4.60143111772041 3.7919702347988724 0.9586223024294058 0.6533533856743686 0.411804903543066 0.10993572534815041 0.22347490433731115 5.138890421775885 0.026608536794249123 0.14173859119290336 39942.12051610747 -4.60143111772041 -0.3052689167550372 ITSDEPLTKDDIPVFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITSDEPLTKDDIPVFLR 17 1 A0A1W2PQD2;Q9UBB4-2;Q9UBB4;B1AHE4 A0A1W2PQD2 ATXN10 Ataxin-10 0 ; 205.18 7.3976e-12 599270000.0 755870.0 801390.0 784550.0 768420.0 797970.0 895360.0 938350.0 850920.0 1247350.0 988520.0 False True 751800.4799050521 828063.7816995146 895007.8205691534 865701.8932121218 899586.7495612553 833465.8706507302 892958.4256548984 914419.9712842095 939957.3061336757 925431.8072854492 0.8123780423219875 0.8947863853182847 0.9671245504241551 0.9354572496826838 0.9720724341645391 0.9006237564878163 0.964910022137877 0.9881008671686566 1.0156959148517208 1.0 19.81976715992353 6.131951364287058 0.6315101901945409 0.9747069640393683 3.3747898842828283e-31 0.7306871458107925 0.030112545435484122 9.199493047418073 0.7018782322162509 0.012908105079353556 9.612215996559303 1355037.6560761328 -6.131951364287058 -0.9747069640393683 ITSEIPQTER ddPTM_BT-474_Trastuzumab_2h_R1 4 ITSEIPQTER 10 0 F8VZQ9;H0YHG0;P82979 F8VZQ9 SARNP SAP domain-containing ribonucleoprotein 0 ;;; 163.91 1.4699e-05 995320000.0 525660.0 630640.0 527280.0 593940.0 605650.0 589890.0 574230.0 524720.0 659510.0 603630.0 False True 522829.9049663169 651630.4711700703 601516.4408000808 669132.7431019598 682775.9375312041 549112.292751698 546452.3011283757 563877.2708741708 496982.59748123615 565105.8166063565 0.9251893886105789 1.153112305732973 1.0644315155210786 1.184083977617358 1.208226702799654 0.9716981786690769 0.9669911104613977 0.9978259899366042 0.8794505079876502 1.0 19.108161513290963 2.654830327480714 9.375236724969335 0.965916695914942 1.111406575923337 0.4503381976713786 0.07934742182257258 0.3996993648528231 42.43721521234887 0.025391024621783203 0.02392890334989781 451.6794453284538 -2.654830327480714 0.1454898800083949 ITSENPDEGFKPSSGTVQELNFR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITSENPDEGFKPSSGTVQELNFR 23 1 Q13085;Q13085-4;Q13085-3;Q13085-2;O00763-3;O00763-2;O00763 Q13085 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase 0 164.27 1.3212e-11 429640000.0 128200.0 109520.0 97112.0 96700.0 111030.0 140050.0 124130.0 110730.0 163170.0 142330.0 False True 127509.78544435895 113165.3069937618 110784.52548736421 108942.21008512555 125169.01237363102 130368.67314223891 118125.357677351 118993.2348755468 122958.93986598136 133246.3775451565 0.9569474817515887 0.8492936849664876 0.8314261710403341 0.817599788393539 0.9393802269124495 0.9784031321831445 0.8865183418387411 0.8930316686111832 0.922793866004434 1.0 17.0237367866432 3.2212355416177045 24.985067169626525 0.9273246255959724 0.8604657964436299 0.34598023185977445 0.0479709100853034 298.92077052068555 431082.681251428 0.01427848230254998 0.01710325153225567 1664.3150545916767 -3.2212355416177045 -0.06685882915234254 ITSLSSS(ph)LDTSLDFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 ITSLSSSLDTSLDFSK 16 0 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 ITSLS(0.003)S(0.026)S(0.97)LDTSLDFSK;ITSLSS(0.017)S(0.98)LDT(0.001)S(0.001)LDFSK 150.39 7.805800000000002e-07 74706000.0 137217.0 132381.0 114507.0 118441.0 118468.0 134865.0 142550.0 119259.0 174180.0 140386.0 True False 136478.23891824204 136787.2215589957 130628.59028731394 133435.6184559705 133554.1975851511 125542.09998806179 135654.31190611777 128158.71216493152 131255.67289242256 131426.44528949863 1.038438182038749 1.0407891749464018 0.9939292659066657 1.0152874344432445 1.0161896815436617 0.9552270831910948 1.032169070747567 0.9751364109607535 0.9987006237846584 1.0 17.00389607467304 4.549566011607492 0.730898799891542 0.9938080034059046 1.0663836802111237 0.34500061808742766 0.021258212525201818 2.346150088383482 1.1374304621775315 0.007977999787460582 0.13425564519655944 35445.900301342685 -4.549566011607492 0.07257567680521915 ITVGNDHFCVS(ph)TPER ddPTM_BT-474_Trastuzumab_2h_R1 2 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 ITVGNDHFCVS(0.5)T(0.5)PER;ITVGNDHFCVS(0.558)T(0.442)PER 86.44 0.003598900000000001 121390000.0 156930.0 216728.0 169269.0 191940.0 196345.0 248216.0 230434.0 186370.0 221574.0 216581.0 True False 156085.10631656199 223941.66046515753 193100.60388747673 216239.58431994834 221348.37192200808 231057.41215761442 219287.0270766352 200277.87576768422 166970.05663948585 202758.61515567708 0.7698075181501935 1.1044742059084207 0.9523669499281943 1.0664877749037722 1.0916841770301986 1.1395689005875764 1.081517680066357 0.9877650605075984 0.8234917984189577 1.0 17.629403689882146 4.7487093947181584 24.343430865528713 1.0318784294158379 0.7698073081121422 0.43683384839973827 0.08764432099755375 942.2974510310204 2260181.8561089076 0.0213244673358485 0.28510833401981434 56067.268006529506 -4.7487093947181584 -0.2620711213036957 ITVGNDHFCVS(ph)TPERR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITVGNDHFCVSTPERR 16 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 ITVGNDHFCVS(0.607)T(0.393)PERR;ITVGNDHFCVS(0.5)T(0.5)PERR 97.488 0.0014371 221710000.0 249190.0 247300.0 204025.0 240060.0 216800.0 247370.0 227749.0 220327.0 281500.0 267040.0 True False 247848.3887276119 255531.23100399313 232749.94658290912 270451.57138609386 244408.19492572444 230269.89414634503 216731.9107843311 236768.91953783628 212128.09690674584 249997.27857555394 0.9914043470385514 1.0221360506801147 0.9310099210242709 1.0818180618888547 0.9776434220337308 0.9210896032884337 0.866937080352379 0.9470859878431844 0.8485216243769497 1.0 17.931552864496485 2.8012514623351823 3.849404125812 0.9116592561757595 1.0046629546588621 0.3993263630717355 0.052101562065091256 0.2170402602514413 6.459606318508231 0.015496886910373464 0.016204075046321518 632.7781323585111 -2.8012514623351823 0.09300369848310264 ITVGNDHFCVST(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 ITVGNDHFCVS(0.106)T(0.894)PER;ITVGNDHFCVS(0.101)T(0.899)PER 148.26 1.3114e-05 508740000.0 430990.0 475280.0 418790.0 456290.0 406200.0 553180.0 549330.0 441220.0 595350.0 532620.0 True False 428669.5977274903 491099.4074871724 477751.991812065 514056.2672155326 457927.1622639722 514939.9686456522 522756.8092556136 474146.076869763 448633.9697812827 498627.73560107674 0.8596986631935856 0.9849019066201177 0.958133608905957 1.0309419843961494 0.9183748306980125 1.0327142512939271 1.0483909576859982 0.9509019314743854 0.8997372944777561 1.0 18.92760360777012 4.739633047831987 24.3710757421254 0.9812440092947099 0.8596986099123993 0.3730836233015111 0.04695057555049366 68.72905947920738 1561572.3125697612 0.01106986898591448 0.06812372810263831 54907.67416746802 -4.739633047831987 -0.12154539938231057 ITVGNDHFCVST(ph)PERR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITVGNDHFCVSTPERR 16 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 ITVGNDHFCVS(0.027)T(0.973)PERR;ITVGNDHFCVS(0.165)T(0.835)PERR 152.06 4.448699999999999e-07 587930000.0 290460.0 338480.0 303600.0 364230.0 308110.0 355760.0 346960.0 310580.0 409480.0 333940.0 True False 288896.19563314004 349746.102184519 346344.2410614935 410341.4806546567 347345.98218895314 331167.1485689601 330176.21928408736 333757.0566932846 308569.14075088565 312627.6632995819 0.924090314286421 1.118730500344007 1.1078489900927353 1.3125565291432273 1.1110532526870525 1.0593021266055151 1.0561324477792267 1.06758644827107 0.9870180312712535 1.0 18.254085917327608 2.689959105467944 3.712122601941964 1.0404458687526696 1.1260385910837318 0.1632823636459666 0.09032999313685397 0.4578623706579136 13.12132330910058 0.03114412547829316 0.03004090994980395 489.73270242825157 -2.689959105467944 0.08559272233106219 ITVNGDS(ph)SAEAEELANEI ddPTM_BT-474_Trastuzumab_2h_R1 3 ITVNGDSSAEAEELANEI 18 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 1 ITVNGDS(0.5)S(0.5)AEAEELANEI;ITVNGDS(0.5)S(0.5)AEAEELANEI;ITVNGDS(0.5)S(0.5)AEAEELANEI 184.32 6.165499999999998e-14 344673000.0 536020.0 555875.0 490435.0 503937.0 514364.0 611930.0 592620.0 547044.0 704880.0 615230.0 True False 533134.1278774209 574376.963341466 559483.9850625613 567735.3725301747 579865.2065257165 569628.7194282768 563952.7065717543 587867.201113147 531171.7689080891 575965.4946750978 0.9256355333893082 0.9972419678812048 0.9713845538232571 0.9857107374990134 1.006770738675619 0.9889979950094135 0.979143215671071 1.0206639226621779 0.9222284560774309 1.0 19.135622858756765 4.743901847594986 24.48844635746168 0.9879312774791632 0.9256354979067736 0.3367983388261687 0.025164753597415983 469.587488029056 2152872.875633187 0.005601909374133849 0.04831392780235158 55450.037934501 -4.743901847594986 -0.06229577957238963 ITVPGNFQGHSGAQCITCSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 ITVPGNFQGHSGAQCITCSYK 21 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 226.71 2.3216e-25 444890000.0 252890.0 228190.0 218020.0 253040.0 237790.0 254800.0 274900.0 280330.0 330160.0 288610.0 False True 251528.46833872038 235785.16620623233 248715.32093618897 285074.8380552243 268071.1470082474 237186.27573468364 261602.03678001976 301249.64808689704 248796.49191733985 270190.6627085476 0.9309295362661811 0.8726621558368648 0.9205178241280533 1.0550876747459335 0.9921554813217712 0.877847788509755 0.9682127211857342 1.1149521048099744 0.9208182452467446 1.0 18.043618293079554 3.9142874165216295 6.9395259376243175 0.9958564640985684 0.9004821240252249 0.2608444259403172 0.06305278379522651 0.3209022140490008 22.157261809203256 0.017425395617282916 0.031817064674318656 8208.946334893697 -3.9142874165216295 -0.09537434007334356 ITVQAS(ph)PGLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 ITVQASPGLDR 11 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 ITVQAS(1)PGLDR;ITVQAS(1)PGLDR 89.85799999999998 0.012503 934210000.0 822950.0 875780.0 873350.0 914860.0 836330.0 942480.0 984850.0 883770.0 1057160.0 966810.0 True False 818519.3286383399 904929.8078798094 996310.0887057178 1030681.1821972902 942831.6681837231 877328.5759592799 937209.0430076482 949721.4050931284 796637.0832182437 905107.3580723158 0.9043339680517128 0.9998038352125602 1.1007645444708838 1.1387391484612606 1.041679376236375 0.969308853954962 1.0354672676661276 1.0492914421951347 0.8801575593362864 1.0 19.787729400082856 1.2565787981472436 24.99255137176376 0.9400787518693613 1.0342374845570161 0.22066709216522162 0.06714715815016624 306.62018164724515 425307.8582665709 0.046597547016284775 0.016941837824203367 18.054222822222748 -1.2565787981472436 0.09415873268765484 ITWSIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 ITWSIIR 7 0 P38606;P38606-2 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 81.297 0.064172 61984000.0 58809.0 78726.0 73259.0 69562.0 65835.0 69368.0 70230.0 66482.0 95693.0 70165.0 False True 58492.37887829415 81346.34731912812 83573.23042135694 78368.54206764737 74218.69701538315 64572.75343470768 66832.7065953465 71443.22442875568 72110.74237050525 65687.0096287212 0.8904710262943488 1.238393219282127 1.2722946423308499 1.1930599750331952 1.1298839364873678 0.9830368865882071 1.0174417586232203 1.0876309460968003 1.097793045810618 1.0 16.003320468556097 2.9322877317641094 6.088862553439422 1.0450034575096867 1.163680928235505 0.21186104291126806 0.10205049906645987 0.34346485566204255 23.989276404887224 0.03143413482700977 0.03369477725497109 855.6334052620474 -2.9322877317641094 0.11867747072581825 IVAERPGTNSTGPAPMAPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 IVAERPGTNSTGPAPMAPPR 20 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;; 226.45 4.0206999999999997e-25 2000180000.0 345956.0 413803.0 346340.0 364951.0 335212.0 316539.0 354625.0 326891.0 393019.0 335007.0 False True 344093.4113353249 427576.18270580453 395101.661558754 411153.75918073056 377899.26124281384 294657.40398265736 337470.4339509433 351285.26633886376 296164.7336347863 313626.5664460772 1.0971436993826413 1.3633289665189094 1.2597837805512724 1.3109659804646094 1.2049338342891538 0.9395167230940519 1.0760263002431767 1.120074967881464 0.9443228518260962 1.0 18.258688245805317 2.910995704110299 5.328268732168702 1.037224275559074 1.2648963586510624 0.6615463135362627 0.08255675042558795 0.14000636060489507 6.405188725927876 0.024865971184946285 0.026652056379484444 814.6962252897733 -2.910995704110299 0.2276720830919885 IVAFENAFER ddPTM_BT-474_Trastuzumab_2h_R1 4 IVAFENAFER 10 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;; 140.05 9.3007e-05 706546000.0 509491.0 727090.0 670970.0 686510.0 610160.0 611350.0 635620.0 539670.0 796090.0 635410.0 False True 506747.9570657719 751290.7511148141 765436.7438242119 773422.0956105442 687860.2592983396 569088.8134631041 604872.6322958025 579942.9157887328 599904.2865594714 594857.5897981299 0.8518811321508755 1.2629758180773505 1.2867562874737288 1.3001802597374807 1.156344427801234 0.956680763972818 1.0168360338162135 0.9749273199750911 1.0084838738681206 1.0 19.18218479986046 2.8202149819499387 5.008346008482544 0.9909354077715963 1.1932771575600687 0.35548276311848004 0.1202362933850816 0.23275999201276276 10.255613874691074 0.03732835653987747 0.03954409613246154 661.0205816293557 -2.8202149819499387 0.2023417497884724 IVAHAVEVPAVQS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 IVAHAVEVPAVQSPR 15 0 Q96FF9;B5MBX0;H0YCL8 Q96FF9 CDCA5 Sororin 1 IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR 189.77 1.5723e-07 5380790000.0 2271260.0 2435990.0 2243350.0 2378430.0 2059790.0 2510580.0 2461660.0 1945520.0 2918180.0 2884550.0 True False 2259031.7885207064 2517070.454562952 2559194.1804522467 2679538.9941340783 2322092.047168163 2337029.513869629 2342580.1013455926 2090704.581550383 2199033.6406086236 2700455.549412498 0.8365372979429985 0.9320910522339675 0.9476898003409153 0.9922544345219939 0.8598890093463489 0.8654204711416432 0.867475897485236 0.7742044048846609 0.8143195103089322 1.0 21.364771370467274 3.075730680383397 9.27029097249537 0.846299251257935 0.9289138638402961 0.15659966773917267 0.06600639408378438 0.43476745527565835 49.13134565660537 0.018952067658201243 0.022669826190176476 1190.5035105376776 -3.075730680383397 0.08261461258236102 IVATKPLYVALAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IVATKPLYVALAQR 14 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YB86 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 110.44 0.00064716 196260000.0 209130.0 258220.0 337340.0 147150.0 86504.0 118160.0 219180.0 123930.0 442110.0 178930.0 False True 208004.0673165271 266814.69660271367 384834.539788157 165779.17491237048 97519.77165062216 109991.87731872151 208577.4260510899 133178.28590378864 333157.91447048495 167510.5342103201 1.2417372334050634 1.5928233878575713 2.2973751567466962 0.9896641766076886 0.5821709787408349 0.6566266285117313 1.2451600553622957 0.7950442432269654 1.9888773923446752 1.0 17.353892299410877 3.6935130764879047 23.72886993698579 0.9948757145236121 1.6988630806287381 0.3250270283881187 0.4420215521866856 256.79533168544975 135267.1422575531 0.11657755303109318 0.18060255637834915 4937.567849074275 -3.6935130764879047 0.703987366105126 IVDAVIQEHQPSVLLELGAYCGYSAVR ddPTM_BT-474_Trastuzumab_2h_R1 3 IVDAVIQEHQPSVLLELGAYCGYSAVR 27 0 P21964-2;P21964;E7EMS6;E7EUU8;F8WBW9 P21964-2 COMT Catechol O-methyltransferase 0 ;; 276.96 6.330599999999997e-61 1870378000.0 564057.0 695688.0 675958.0 712606.0 694289.0 730579.0 705038.0 653189.0 784744.0 753153.0 False True 561020.1797846244 718843.5545277226 771127.010867737 802821.8465348608 782702.588776689 680075.793327981 670932.6184332896 701933.2800065354 591354.3562308612 705086.1307332753 0.795676095913523 1.0195116925362577 1.0936635642879269 1.1386152861919754 1.110080818016792 0.9645286776818542 0.9515612195286457 0.9955284176084118 0.8386980405016116 1.0 19.42743997704308 2.565750764214026 8.94220879833929 0.9523610178151376 1.0401972098438332 0.14704773899043733 0.09731462950238037 0.7417927109997062 69.74671360327122 0.03275188115879419 0.030841789809168484 367.91776996476665 -2.565750764214026 0.08783619202869564 IVDDLKDEAEQYR ddPTM_BT-474_Trastuzumab_2h_R1 4 IVDDLKDEAEQYR 13 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;; 189.86 4.4718e-06 1685250000.0 2360890.0 1998580.0 1860520.0 1648530.0 1758290.0 2318560.0 2240790.0 2123460.0 3066200.0 2189570.0 False True 2348179.2305595367 2065101.527132878 2122465.0440702583 1857233.728972412 1982197.8092986715 2158283.404503171 2132394.427050925 2281923.3679113956 2310576.094975006 2049829.7680148105 1.1455484095314252 1.0074502572634887 1.0354347844825147 0.9060429104662086 0.9670060608098017 1.0529086064514488 1.0402787881825306 1.1132257924624442 1.1272038932348607 1.0 20.967072672694695 2.171764583154413 2.181296476626741 1.0891399565750528 1.0092349771365712 0.1349829374646908 0.06591269777443755 0.4973083233823847 4.723181259946941 0.032650634566020124 0.020602224591524384 148.51303834087355 -2.171764583154413 -0.07990497943848163 IVDDLKDEAEQYRK ddPTM_BT-474_Trastuzumab_2h_R1 3 IVDDLKDEAEQYRK 14 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;; 184.02 7.542900000000002e-07 994260000.0 2035080.0 1688340.0 1581750.0 1517290.0 1443890.0 2067280.0 2089610.0 1941060.0 3225660.0 2120570.0 False True 2024123.3553986452 1744535.376276918 1804446.6511825365 1709378.7584287534 1627760.8328934694 1924373.799453678 1988527.581214609 2085911.7537029646 2430739.314629535 1985233.4070886814 1.0195896100534574 0.8787558027422359 0.9089342566669446 0.8610467425770024 0.8199342339702812 0.9693438527592314 1.0016593384506653 1.0507136069012293 1.224409838132929 1.0 20.920877206643702 2.001195518969977 1.603506306287594 1.1061448158131293 0.8977234956738903 0.5684970059685475 0.07253426092194871 0.26282536536993034 1.261488431808363 0.04595354098639569 0.022396975145150322 100.27565765480504 -2.001195518969977 -0.20842132013923897 IVDILYATDEGFVIPDEGGPQEEQEEY ddPTM_BT-474_Trastuzumab_2h_R1 1 IVDILYATDEGFVIPDEGGPQEEQEEY 27 0 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 102.69 0.0024089000000000003 69812000.0 120650.0 141630.0 127600.0 138410.0 122700.0 149280.0 130280.0 113950.0 149500.0 146340.0 False True 120000.43380547514 146344.068932857 145564.97088091754 155932.69180850295 138325.11770012183 138960.6249673217 123977.85868206965 122453.5276263755 112657.72819736588 137000.4559120225 0.8759126603384134 1.0682013279345193 1.0625144997648395 1.1381910430184126 1.0096690319698642 1.014307755709645 0.9049448620936301 0.8938183950644033 0.8223164473971621 1.0 17.063821168651224 2.2815259709189384 2.821069870975005 0.893062028690482 1.039403162550308 0.3918260839098142 0.07431915082725794 0.24309148240209036 3.975982395470779 0.029681884770310557 0.022223967170275936 191.2167669291772 -2.2815259709189384 0.14634113385982594 IVDKPGDHDPETLEAIAENAK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVDKPGDHDPETLEAIAENAK 21 1 Q96Q11-2;Q96Q11 Q96Q11-2 TRNT1 CCA tRNA nucleotidyltransferase 1, mitochondrial 0 180.08 3.3155e-17 528620000.0 331030.0 284770.0 283200.0 229940.0 274440.0 374670.0 376400.0 328730.0 544270.0 366110.0 False True 329247.77126089064 294248.39730290015 323072.09838147287 259050.38042372064 309388.3072666782 348769.9447783122 358192.0940123653 353261.5018571172 410141.9513443505 342744.5463574596 0.9606214738060551 0.8585064311891888 0.9426031772494793 0.755811823052462 0.9026790084764964 1.0175798520644248 1.045070148654663 1.0306845305386394 1.1966403425033638 1.0 18.38677418491792 2.6577704780907223 2.752971627038917 1.0637657569281027 0.8768211733463193 0.6103847834546807 0.07048543878930848 0.18643197701339242 2.7713263367873187 0.024212389105093435 0.02297171079175341 454.7476653436509 -2.6577704780907223 -0.18694458358178345 IVDNVRPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 IVDNVRPDR 9 1 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ;;; 107.79 0.0024777 4045510000.0 2966630.0 3670490.0 3436940.0 3617000.0 3560940.0 3649100.0 3737230.0 3313530.0 4002900.0 3685300.0 False True 2950657.993703582 3792660.040791942 3920831.2775819823 4074911.829140635 4014404.6016550213 3396846.306057433 3556445.907294986 3560802.434364412 3016438.9311119444 3450100.998855933 0.8552381494576627 1.0992895692182931 1.1364395647785805 1.1810992868011376 1.1635614734137387 0.9845643090401819 1.0308237087767336 1.0320864332798338 0.8743045296680321 1.0 21.7182071655384 2.7148787171769153 23.944474294438514 0.9939882368212217 1.0957618116663888 0.22383667756913683 0.09415705365555721 746.1508099919095 754422.4652559416 0.03130913816515235 0.029537262973173908 518.6551769725769 -2.7148787171769153 0.10177357484516703 IVDQIRPDR ddPTM_BT-474_Trastuzumab_2h_R1 8 IVDQIRPDR 9 1 P17844;P17844-2;J3KTA4;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 P17844;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 ;;;;;;; 155.06 6.7689e-05 20360520000.0 7330650.0 8878560.0 7964170.0 8382780.0 8199380.0 8465980.0 8288200.0 7611640.0 9096990.0 8187690.0 False True 7291182.594911782 9174077.502397139 9085455.910193397 9444039.088494213 9243522.441467194 7880746.729373308 7887268.102001307 8179659.227924752 6855158.707920769 7665144.614365919 0.9512126596081095 1.1968564148422192 1.1852947814142407 1.2320757876888992 1.2059162490089357 1.0281275991327432 1.0289783818584566 1.0671239277853333 0.8943286856027368 1.0 22.86988158005499 2.6768510949326707 6.53262367892665 1.0139193813494731 1.1625419940403923 0.4410920141663175 0.08412890415006694 0.23573611727216173 20.353944103689976 0.027414997473010346 0.02590460731451543 475.1722773120026 -2.6768510949326707 0.14862261269091914 IVDRIDNDGDGFVTTEELK ddPTM_BT-474_Trastuzumab_2h_R1 2 IVDRIDNDGDGFVTTEELK 19 1 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ; 191.78 8.118800000000001e-15 376290000.0 608070.0 638540.0 588410.0 597810.0 563210.0 656770.0 691930.0 631990.0 1072580.0 740340.0 False True 604796.2186829281 659793.4178944195 671253.0134485955 673492.6847051592 634931.4550927915 611369.0357702833 658458.7024707131 679152.3029801938 808257.0308356562 693090.867363037 0.8726073984843598 0.9519580317147991 0.9684920766630115 0.9717235018080069 0.9160868870029679 0.8820907395538539 0.9500322879392613 0.9798892684362233 1.1661631524749205 1.0 19.40268498307658 1.4496248160142122 4.326725021055049 1.0837142098164527 0.9336756909298304 0.594846695275274 0.049369842031941856 0.12731870452440003 4.536865846317809 0.032426794441524055 0.012147025024999678 28.15949201222588 -1.4496248160142122 -0.15003851888662234 IVDS(ph)PEKLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVDSPEKLK 9 1 E9PQC4;Q9BZD4 E9PQC4 NUF2 Kinetochore protein Nuf2 1 IVDS(1)PEKLK 95.094 0.0050132 227730000.0 514210.0 459820.0 415640.0 376470.0 398580.0 632490.0 666990.0 515130.0 836830.0 648510.0 True False 511441.55049410235 475124.8307329398 474158.4991923556 424131.06339966133 449336.8004312511 588767.455021311 634725.1455507646 553571.6163771381 630604.4594475026 607121.5365826564 0.8424039004988785 0.7825860261971682 0.7809943654136892 0.6985933422605872 0.7401101317546099 0.9697686864072451 1.0454663643188848 0.911797034071731 1.0386791135709432 1.0 19.211625825635526 2.7147754072668837 7.718824326298035 0.986248833035421 0.766402871396398 0.8406191262987319 0.04876426808340551 0.0874885424397912 23.65271710414952 0.01609059168635279 0.01545524924843376 518.5318140256761 -2.7147754072668837 -0.21984596163902304 IVEDEPNKICEADR ddPTM_BT-474_Trastuzumab_2h_R1 6 IVEDEPNKICEADR 14 1 P55060-3;P55060;P55060-4;P55060-2 P55060-3 CSE1L Exportin-2 0 ;;;;; 254.18 2.7463e-24 10199730000.0 6783340.0 6878170.0 6266600.0 6188220.0 5922110.0 7707780.0 7339720.0 6661060.0 11014950.0 7896610.0 False True 6746819.251139927 7107105.730508437 7148882.809736358 6971648.017507509 6676255.605403969 7174959.310762486 6984669.703146765 7158142.121377327 8300463.165268064 7392641.589172042 0.9126398418965628 0.9613756658943364 0.9670268365515358 0.9430523492061134 0.9030947226202121 0.9705541955762614 0.9448137879938843 0.9682793403459211 1.1228007019068398 1.0 22.817658539464183 1.3892890874895483 5.997637895796045 1.0604328404679386 0.9457087644468113 0.645624746828093 0.03443329251748248 0.11548068027745426 5.818314636781682 0.021779863466359572 0.007924979678676034 24.50693999921511 -1.3892890874895483 -0.11472407602112733 IVEIDAHIGCAMSGLIADAK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVEIDAHIGCAMSGLIADAK 20 0 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 194.92 1.9772e-18 47824000.0 88866.0 84795.0 80412.0 89335.0 77910.0 97346.0 98802.0 84929.0 129570.0 108530.0 False True 88387.55532994075 87617.35031534001 91733.3106463665 100644.80184027621 87831.376691251 90616.70014783555 94022.56979970702 91266.83324072351 97639.20964904819 101603.52248279234 0.8699260928174035 0.8623455976162535 0.9028556137106618 0.9905641003472248 0.8644520834021892 0.8918657339186491 0.925386910829108 0.898264459838787 0.9609825256361998 1.0 16.632590894070155 -4.999999997170382 0.11902568769980848 1.3173345403386858 0.8578861434554779 0.44629624888399055 0.03603496642302831 154.76122001839198 1.1979889490762035 11.735051138172565 0.3642240892803051 1.000000006515437e-05 4.999999997170382 -0.45944839688320793 IVEIGDENATLDGTDVLFTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 IVEIGDENATLDGTDVLFTGR 21 0 O95865;A0A140T971;Q5SSV3;Q5SRR8;H0Y7N1 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 ;; 266.71 1.1478999999999999e-36 123979000.0 103522.0 122572.0 111303.0 110787.0 111019.0 138162.0 125495.0 119653.0 163315.0 146725.0 False True 102964.64905437535 126651.73492366148 126973.49493698096 124812.62284075288 125156.61158883304 128611.18613836479 119424.32741254487 128582.1144456228 123068.2065588816 137360.8848824077 0.7495922084552791 0.922036393636266 0.9243788364182481 0.908647486856268 0.911151756891909 0.936301380472808 0.8694201956749331 0.9360897358494724 0.8959479743031518 1.0 17.067611712798563 4.739252916243545 24.543322182884356 0.918728102614892 0.7495921403817399 0.7212030557359446 0.032198551929362086 21.158528575178845 749910.8149345067 0.006773139631892949 0.04068925484649169 54859.6353127433 -4.739252916243545 -0.16913596223315208 IVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 IVEPEVVGES(1)DS(1)EVEGDAWR;IVEPEVVGES(1)DS(1)EVEGDAWR 200.39 1.9928e-21 1033230000.0 192849.0 207021.0 196070.0 185983.0 187032.0 205093.0 191326.0 192023.0 208101.0 202309.0 True False 191810.72241153818 213911.5688381628 223674.95172900887 209528.4287307335 210849.41657448406 190915.4036469917 182070.83044370337 206352.73133303673 156817.29696053543 189397.46641455122 1.012741754378619 1.1294320504264581 1.1809817520971027 1.1062895016352532 1.11326418756299 1.0080145593348013 0.9613160824717085 1.0895221316285932 0.827979908755988 1.0 17.531057506322252 2.6960341099835254 4.008150458538012 0.9883362040540212 1.1143281261426912 0.4503779809823417 0.07207303489117138 0.22579353254686177 7.8904714609463635 0.023575806696721605 0.022778082867141586 496.6313259088807 -2.6960341099835254 0.12599192208866994 IVEPEVVGES(ph)DSEVEGDAWR ddPTM_BT-474_Trastuzumab_2h_R1 6 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 IVEPEVVGES(0.922)DS(0.078)EVEGDAWR;IVEPEVVGES(0.93)DS(0.07)EVEGDAWR;IVEPEVVGES(0.989)DS(0.011)EVEGDAWR;IVEPEVVGES(0.939)DS(0.061)EVEGDAWR;IVEPEVVGES(0.969)DS(0.031)EVEGDAWR;IVEPEVVGES(0.967)DS(0.033)EVEGDAWR 360.25 1.2144999999999994e-95 4074160000.0 887632.0 1162322.0 1037681.0 997632.0 995795.0 1004757.0 1076894.0 941470.0 941874.0 1009829.0 True False 882853.0879371852 1201009.1851315133 1183777.4651150578 1123932.1089104875 1122603.590710616 935300.5135335702 1024800.5230854223 1011727.272087792 709761.7731649895 945380.8486618964 0.9338597129260512 1.2703972021767063 1.2521699236774162 1.1888670164001256 1.1874617433805252 0.9893372759321346 1.0840081270272584 1.0701795720949956 0.750768089040089 1.0 19.850536113598825 1.9515739991848808 0.933442621760299 0.9142749839468542 1.1731024092493518 0.38440410253483026 0.11982664186148101 0.5783664342713429 0.9280705493899176 0.0984750402212055 0.04597906651257257 89.44869300578861 -1.9515739991848808 0.2588274253024976 IVEVLLMK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVEVLLMK 8 0 P38159;P38159-2;H3BT71;H0Y6E7;H3BR27;P38159-3;O75526 P38159 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 0 85.064 0.039567000000000005 44383000.0 65448.0 76062.0 69007.0 69053.0 66904.0 78203.0 74878.0 61948.0 83913.0 74805.0 False True 65095.635239956406 78593.67768955012 78722.58578040342 77795.10271983633 75423.82782892372 72797.01068006063 71255.86507826232 66570.87432557016 63233.76552659237 70030.88085621734 0.9295275804627726 1.122271728252474 1.124112460359185 1.1108685449717528 1.0770081270829481 1.0394987152813704 1.0174920578902904 0.9505931313679885 0.9029411704305085 1.0 16.095703613520154 2.0663034601068357 1.64053921875936 0.9438433038272814 1.0790062497220856 0.45018842497590594 0.05731384966266925 0.3162915282268393 1.608882390943593 0.0347341562536384 0.018036375775859106 116.49397382502029 -2.0663034601068357 0.13516294589480415 IVEYS(ph)PPSAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVEYSPPSAPR 11 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 IVEY(0.001)S(0.993)PPS(0.006)APR;IVEYS(0.997)PPS(0.002)APR 96.746 0.0071150000000000015 624970000.0 203826.0 255950.0 231190.0 228650.0 227310.0 271110.0 248810.0 223810.0 261230.0 245830.0 True False 202728.6234631974 264469.1410249576 263739.5424604963 257597.06655598755 256256.58112807365 252368.8038242937 236774.10975349796 240511.8386841521 196853.36680266174 230140.9189343486 0.880889084835144 1.1491617494601283 1.1459915241571286 1.119301459943641 1.1134768311287353 1.0965838017544631 1.0288223009183413 1.045063345526842 0.8553601320190145 1.0 17.81215799122474 1.4644921258200199 3.0347464377614837 0.9293176785576257 1.0851598506123032 0.32426104492469854 0.0818236986479448 0.2531635277883757 4.471087939519485 0.0598523365061744 0.020733520707694773 29.140173003332116 -1.4644921258200199 0.15584217205467754 IVFLDTQPILSPSILDHLINNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVFLDTQPILSPSILDHLINNDR 23 0 Q9H0W8-2;Q9H0W8 Q9H0W8-2 SMG9 Protein SMG9 0 ; 212.05 3.761e-25 427240000.0 348160.0 489440.0 439970.0 457370.0 440360.0 494070.0 471560.0 415050.0 506470.0 480400.0 False True 346285.5452442122 505730.71452727204 501913.951712205 515272.99510479724 496437.23578178947 459916.10381567926 448748.84126586356 446023.1385811951 381657.25485029997 449740.46070886805 0.7699675157054067 1.1244945890128581 1.1160079991938074 1.1457118941280904 1.1038304959249592 1.0226255896362375 0.9977951295699713 0.9917345170105135 0.8486166760463195 1.0 18.778733155726883 1.8811681210319569 1.5406407946703393 0.9333008115906064 1.0617666085847484 0.14925517197768456 0.10753588277663093 0.6621330411731899 2.945047855681173 0.0758122587551592 0.03319509446054522 76.06206660897975 -1.8811681210319569 0.12846579699414196 IVGCICEEDNTSVVWFWLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVGCICEEDNTSVVWFWLHK 20 0 P10606 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial 0 212.9 1.2679e-22 36517000.0 36643.0 42804.0 52981.0 30122.0 46278.0 83675.0 44394.0 28850.0 59372.0 52518.0 False True 36445.718159420016 44228.70526443561 60440.264280892654 33935.44211152177 52171.228988803865 77890.74419976323 42246.49261845103 31002.933497331614 44740.566144040204 49166.25627707811 0.74127503127407 0.8995743953979989 1.2293037716819335 0.690218143115828 1.0611185992033059 1.5842317495317784 0.8592578694698553 0.630573402266252 0.9099852120507859 1.0 15.585380886098706 2.0167335072301076 24.998745278063033 0.7905827804761887 1.0392028537685465 0.10010320276173512 0.25444804809653787 428.8144213406631 640617.5559589276 0.09752637075107351 0.07201130145360139 103.9282243388294 -2.0167335072301076 0.2486200732923578 IVGCTHITAQTAVLIETLCALGAQCR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVGCTHITAQTAVLIETLCALGAQCR 26 0 O43865-2;O43865 O43865-2 AHCYL1 Putative adenosylhomocysteinase 2 0 ; 140.45 1.2134e-12 16835000.0 30300.0 48513.0 50301.0 53271.0 49592.0 53900.0 51878.0 48483.0 58377.0 55877.0 False True 30136.868166646465 50127.725878272184 57382.94357587024 60015.1031380013 55907.247245186954 50174.01986695233 49368.46294679466 52101.04765168557 43990.77056172328 52310.882021293495 0.5761108779312697 0.9582657363312543 1.0969599700596164 1.1472775992110351 1.068749848691703 0.959150714501978 0.9437513006700765 0.9959887051890559 0.8409487445426086 1.0 15.674823475258691 4.728935428389117 4.058195081799142 1.0089868243274631 0.5423276251664085 0.7140973517406735 0.08115240402070416 0.1218669295843282 4.3160424608961705 0.02104086276458351 0.16443167152011873 53571.700031560504 -4.728935428389117 -0.4666591991610546 IVGELEQMVSEDVPLDHR ddPTM_BT-474_Trastuzumab_2h_R1 16 IVGELEQMVSEDVPLDHR 18 0 Q00341;A0A024R4E5;Q00341-2 Q00341 HDLBP Vigilin 0 ;;;;;;;;;;;;;;; 240.21 6.0504999999999995e-24 3173471000.0 1342473.0 1628560.0 1494072.0 1542084.0 1585880.0 1622722.0 1601682.0 1509075.0 1802235.0 1619507.0 False True 1335245.2745307717 1682765.6351146896 1704424.3508933748 1737311.6762865656 1787832.417752806 1510547.0476167072 1524202.5226405782 1621689.8394275792 1358098.3329617365 1516148.6767302998 0.8806822807182332 1.1098948677933835 1.124180218637335 1.1458715777355173 1.179193337165597 0.9963053563284617 1.0053120423042199 1.0696113542933583 0.8957553792749323 1.0 20.531979803482407 2.6944984726660306 24.87641784869691 1.0046082383112425 1.0944119069722456 0.2281522390644143 0.08532715950328136 700.0780999566605 395246.60601776815 0.027898983512387284 0.026303587035062345 494.8783705208414 -2.6944984726660306 0.08980366866100309 IVHKGDECILK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVHKGDECILK 11 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 131.37 0.00012304 536420000.0 534360.0 488960.0 476140.0 450820.0 468350.0 655690.0 700070.0 542380.0 880190.0 705180.0 False True 531483.0651329766 505234.7380174383 543176.3733169285 507893.7657763834 527991.5963720616 610363.693628237 666204.9395728937 582855.149749834 663278.9684417351 660174.8086650278 0.805064140826147 0.7653044790350279 0.8227765830921545 0.7693322421729792 0.7997754374174616 0.9245485977607714 1.0091341426978404 0.8828800222299519 1.0047020270024911 1.0 19.332488562849676 2.692387869549547 3.6606426083697827 0.9580585564708353 0.7900281002808814 0.8354791657602864 0.038334107491577854 0.09349529674975816 2.6110639491762577 0.012407553589099061 0.01199040103779859 492.4791737828894 -2.692387869549547 -0.16803045618995383 IVIFRK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVIFRK 6 1 A0A3B3ITJ4;M0R1W6;B4DVF8;M0QYL7;P14866;M0QXS5;P14866-2 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 135.81 0.021553 245740000.0 225040.0 349330.0 306260.0 374900.0 357770.0 436930.0 457480.0 336270.0 631370.0 485820.0 False True 223828.40964429436 360957.2378755559 349378.74594035925 422362.30156063684 403329.8888310721 406726.0575225871 435349.94465668773 361364.17494446115 475777.3234245545 454814.5516685724 0.49213115284710635 0.7936360799172247 0.7681784689135338 0.928647291541402 0.8868007572567342 0.894267907722909 0.9572032008640112 0.7945308117753246 1.0460908114726677 1.0 18.79491888804305 5.126389501241967 0.9106900137062307 0.9144795958165834 4.53031555049908e-16 0.7629327197924298 0.07264116324345728 1.8763648605048289 0.7547886536741826 0.021951400739629406 2.006424524787652 133779.47929828786 -5.126389501241967 -0.914479595816583 down IVILPDYLEIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IVILPDYLEIAR 12 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 110.14 0.003542 147990000.0 174710.0 230350.0 192660.0 204520.0 182910.0 218280.0 242450.0 207760.0 262890.0 244910.0 False True 173769.3807721056 238017.06050048443 219784.85336926047 230412.21103009224 206202.50430749185 203190.81737585066 230721.76725105764 223264.1061839035 198104.2820455219 229279.6341220002 0.757892786411385 1.038108166091346 0.9585886431252436 1.00493971875186 0.8993494127689119 0.8862139812545775 1.0062898439915082 0.9737633568671179 0.8640291267217837 1.0 17.806748686939123 3.4784928736718497 0.007757550924182239 1.8755873077276608 4.6241311351229725e-06 0.05659009833504414 0.07937936838876956 24655.039662629573 48.2336054499041 5631.396306982218 6031.561202965716 3009.489785819463 -3.4784928736718497 -1.8755826835965257 IVIWDFLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 IVIWDFLTR 9 0 Q15291;Q15291-2 Q15291 RBBP5 Retinoblastoma-binding protein 5 0 80.438 0.056094000000000005 29598000.0 74375.0 56089.0 51541.0 41404.0 48571.0 53675.0 62213.0 40870.0 94798.0 51225.0 False True 73974.57326383925 57955.888458483525 58797.524797597005 46645.74215475225 54756.22894712805 49964.573587359286 59203.519513260675 43919.92693365485 71436.30312811978 47955.77664407108 1.542558132524478 1.2085277836001598 1.2260780434022296 0.9726824465998761 1.1418067390197868 1.04188852905454 1.2345440665609613 0.9158422614991641 1.489628739793367 1.0 15.549416989032494 5.041151641332694 1.325569405744292 1.1077041286265623 2.0336879451096137 0.3873923675792116 0.15631408665085025 2.488897245835092 2.2803698974286974 0.03954768855832048 3.755993267266892 109938.96430856427 -5.041151641332694 0.9259838164830514 IVKPNGEKPDEFESGISQALLELEMNSDLK ddPTM_BT-474_Trastuzumab_2h_R1 5 IVKPNGEKPDEFESGISQALLELEMNSDLK 30 2 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 ;;;; 210.45 3.3888000000000003e-26 2753570000.0 1860490.0 1241520.0 1105625.0 1020156.0 973242.0 1720520.0 1593230.0 1675100.0 2892140.0 1735980.0 False True 1850473.3285598727 1282843.2426853122 1261287.3897352247 1149307.6450010499 1097178.59984272 1601584.502068437 1516159.3781703538 1800104.4679854473 2179410.8496905006 1625188.270152749 1.138620898602689 0.7893505424849883 0.7760869389099628 0.7071843097249454 0.6751086135636444 0.9854762869522227 0.9329130698364272 1.10762826747221 1.3410205387992746 1.0 20.632175426346738 1.9464594681226033 1.5940925567293485 1.1759081355188674 0.8177480098516443 0.46071835940613803 0.14828460387233738 0.32118267374924825 1.5197855366357047 0.0996550424034735 0.04633404275498464 88.40146619445922 -1.9464594681226033 -0.3581601256672231 IVLDNSVFSEHR ddPTM_BT-474_Trastuzumab_2h_R1 10 IVLDNSVFSEHR 12 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ;;;;;;;;; 237.87 4.0558e-16 31162580000.0 9703860.0 14146650.0 13494770.0 14334130.0 12869550.0 13117500.0 14070280.0 11710540.0 13564050.0 13174850.0 False True 9651615.495960206 14617512.693419483 15394716.317356437 16148829.388288537 14508410.908700906 12210718.10027361 13389646.802710718 12584439.95971722 10221371.626458066 12334019.793443434 0.7825198643746988 1.185137768401338 1.2481507712141033 1.3092916712257097 1.1762921700849989 0.9900031218341834 1.0855866154705247 1.0203032077512073 0.828713736286655 1.0 23.55613973085656 1.9289580920081661 1.1730470931726928 0.9313718038541802 1.1464843128980013 0.21962751476838038 0.14458467746037018 0.7056227231956029 1.7902916854478346 0.11551347124537259 0.05103733800965158 84.9098535861594 -1.9289580920081661 0.21511250904382118 IVLDSDAAEYGGHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IVLDSDAAEYGGHQR 15 0 Q04446;E9PGM4 Q04446 GBE1 1,4-alpha-glucan-branching enzyme 0 197.19 8.5521e-09 297040000.0 144080.0 169550.0 155180.0 166650.0 155220.0 155720.0 176280.0 136240.0 184520.0 169450.0 False True 143304.2892887929 175193.36925486082 177027.99515126005 187747.8729129906 174986.34693898048 144955.44292545112 167752.66294500485 146406.92061270238 139047.51844132418 158635.55592655612 0.9033554202384416 1.1043764320778786 1.1159414679595483 1.1835169727013324 1.1030714136999296 0.9137638915739765 1.057472027410234 0.9229136542408232 0.8765217711072248 1.0 17.27535664150524 2.7464589700270117 24.723447428020773 0.9558614553797119 1.0908122285784594 0.3798865237002238 0.08131755665764535 537.590309846484 1682767.8183966372 0.02538656896081511 0.026483614649102004 557.7749038655371 -2.7464589700270117 0.1349507731987475 IVLEDGTLHVTEGSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVLEDGTLHVTEGSGR 16 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 0 ; 176.33 3.2058e-09 599140000.0 190194.0 263765.0 213394.0 247683.0 275304.0 268410.0 260940.0 230112.0 298820.0 302400.0 False True 189170.01663654007 272544.2585756907 243438.0203461014 279039.6424044897 310362.3325453492 249855.4484691777 248317.335312398 247284.12592505995 225179.81498285526 283100.573102335 0.6682078194457028 0.9627117868008398 0.8598994261240991 0.9856555193324269 1.0962970832035712 0.8825677946574136 0.8771346966600327 0.8734850771060498 0.7954057193005308 1.0 18.110955144242322 4.744414069017686 24.516279762047233 0.9212737035136704 0.668207674058215 0.466857962403743 0.08248203168962275 474.37518700661195 1986771.4987555626 0.020481071787622283 0.18303481776353844 55515.47614436966 -4.744414069017686 -0.2530660294554554 IVNGWQVEEADDWLR ddPTM_BT-474_Trastuzumab_2h_R1 6 IVNGWQVEEADDWLR 15 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;;;;; 371.89 3.0065999999999987e-97 3303500000.0 805208.0 960304.0 881662.0 903482.0 891352.0 865109.0 921843.0 837503.0 939887.0 937175.0 False True 800872.8495950187 992267.1381239746 1005792.3460565176 1017862.7285639029 1004860.3937427779 805306.0510775374 877249.9323077612 900001.7266140636 708264.442690553 877363.6891441145 0.912817409136553 1.1309644454193797 1.1463801824733455 1.1601377412334535 1.145317963549459 0.9178702755104091 0.9998703424386479 1.0258023414349788 0.8072643664812239 1.0 19.74281547418839 2.7399429542885048 24.996892792867555 0.9620407397826619 1.106907535270415 0.41441917739579415 0.08772736541078138 129.9540658590693 2349991.3972209007 0.02756360380895638 0.027806516328475698 549.4686949728858 -2.7399429542885048 0.14486679548775305 IVNHPTMLQDPDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 IVNHPTMLQDPDVR 14 0 Q13596-2;Q13596;H0YK42;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 0 ;; 123.29 0.00010376 1103660000.0 632890.0 846830.0 848230.0 935250.0 785540.0 859190.0 893040.0 773690.0 1009430.0 896220.0 False True 629482.5905606888 875016.2246304554 967653.411052671 1053652.5541066562 885573.8627396389 799796.21761571 849840.2434559052 831426.6765182144 760669.5021690098 839022.4723074558 0.7502571281905043 1.0428996284497727 1.1533104809355796 1.255809693879749 1.055482888681347 0.9532476709665869 1.012893303225477 0.9909468506029979 0.9066139790952655 1.0 19.678349926642248 2.802731513102891 6.639287781533127 0.9771952421270256 1.0686423943363497 0.08457014649365802 0.12324013847848113 0.6010880731156227 51.50694948916451 0.039751658846086994 0.0420964106560935 634.9382828045126 -2.802731513102891 0.09144715220932409 IVNHWAS(ph)PELR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVNHWASPELR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 IVNHWAS(1)PELR;IVNHWAS(1)PELR 176.89 5.295700000000002e-06 612360000.0 385310.0 435870.0 434900.0 419360.0 376980.0 389480.0 436160.0 346460.0 506040.0 424590.0 True False 383235.5337719651 450377.6694610214 496130.13978143485 472450.93300205073 424986.1684644821 362556.16433730186 415061.2745069959 372314.6044882324 381333.2225885957 397492.30269021215 0.9641332201359428 1.1330475242234457 1.2481503073736164 1.188578822292964 1.069168297318445 0.9121086418115171 1.044199527130155 0.9366586521762105 0.9593474389510126 1.0 18.60056739778178 2.970465576535294 4.984760644848134 0.9710489601564897 1.1410123225775772 0.5135581905608944 0.0749618110918078 0.15574276459870712 10.128377491300373 0.023494759224478586 0.026049937050590805 934.2553134840109 -2.970465576535294 0.16996336242108756 IVPEGEWGQFMDALR ddPTM_BT-474_Trastuzumab_2h_R1 3 IVPEGEWGQFMDALR 15 0 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;; 88.18700000000003 0.016011 235347300.0 35737.9 50262.0 40952.2 36621.7 44757.8 41339.5 36729.5 35767.5 50490.4 57818.8 False True 35545.49111725394 51934.940285979406 46717.9137970965 41258.00346509248 50457.44052973521 38481.79766771567 34952.753764684334 38436.65247368489 38047.717456697545 54128.75468283487 0.6566840734750177 0.9594704439496156 0.8630886498467981 0.7622197057154185 0.9321744205162013 0.7109307777945035 0.6457335656341717 0.7100967443072137 0.7029113763957165 1.0 15.724107576514525 2.7083258093265163 24.383666350183688 0.7251588456516117 0.8392050531307583 0.07655805062085974 0.12070146828743757 853.5168653432007 688340.3820131661 0.036325259121512715 0.03425266079331182 510.88812640790144 -2.7083258093265163 0.11404620747914662 IVPEGEWGQFMDALREPLPATLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVPEGEWGQFMDALREPLPATLR 23 1 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 220.86 1.6994999999999998e-32 419770000.0 26025.0 37021.4 20443.6 32510.0 39259.7 30274.6 28121.0 30499.0 39314.0 35272.7 False True 25884.884291649327 38253.63491909109 23321.881181043325 36625.762666674615 44259.19008452705 28181.78816074273 26760.679797347853 32774.990250783936 29625.59148061031 33021.56608752221 0.7838781547502193 1.1584439943793554 0.706262117285101 1.1091467488125681 1.3403116607861667 0.8534358451094699 0.810400079948354 0.9925328848400244 0.8971588870766753 1.0 15.011120922972152 -3.192617334382045 9.533079158297504 0.9998278632345692 0.9689289343433378 0.0 0.18490087057878546 0.0 0.0 0.0 0.039875343714344584 0.0006417748082437957 3.192617334382045 -0.03089892889123136 IVPNIDAGSIIS(ph)DTER ddPTM_BT-474_Trastuzumab_2h_R1 1 IVPNIDAGSIISDTER 16 0 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 Q5T321 NBEA Neurobeachin 1 IVPNIDAGSIIS(0.996)DT(0.004)ER 142.35 1.5909e-06 25836000.0 35660.0 41861.0 43504.0 32237.0 31248.0 30742.0 39060.0 30283.0 32256.0 31073.0 True False 35468.01052219847 43254.31807949114 49628.98505645332 36318.20089466592 35227.24757859333 28616.87789888399 37170.5185763098 32542.871233958176 24306.94100825574 29089.894537066288 1.2192553835836428 1.4869190407128003 1.706055860505653 1.248481696913316 1.2109788687513747 0.9837394859723682 1.2777811390463172 1.1187002136598367 0.835580238260537 1.0 14.82823044562922 3.348354597831257 2.4868461811062215 1.0822778395735773 1.471074188650364 0.5517863308031299 0.16021907352901 0.2189202953452279 2.750991695768847 0.04792451129200198 0.06899076338394472 2230.255391034688 -3.348354597831257 0.38879634907678673 IVQIPFCGEIDCEDWIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 IVQIPFCGEIDCEDWIKK 18 1 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 111.06 0.00050586 89784000.0 120170.0 170130.0 111200.0 122530.0 117870.0 184990.0 145950.0 143440.0 253880.0 153670.0 False True 119523.01807214206 175792.67420424303 126855.99343227308 138042.28543671596 132880.04582977458 172202.07671961977 138889.84091685642 154144.2211735614 191314.6758177074 143862.64903649385 0.8308134103788294 1.221947985676598 0.8817854688612979 0.9595422186456373 0.9236591062358841 1.196989474842334 0.9654336399827035 1.071467974529368 1.329842576228221 1.0 17.134332549180645 2.752015729132462 24.606706573891152 1.1010011927663768 0.9731400127813852 0.22834286226034206 0.13571121491448046 1118.7849041692602 2046031.1235869788 0.040226948570098266 0.04244076636226686 564.9574358814533 -2.752015729132462 -0.12786117998499158 IVQMTEAEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVQMTEAEVR 10 0 P62140;C9JP48;C9J9S3 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase 0 ; 88.49600000000002 0.028278 101705000.0 46309.0 52468.0 54081.0 52612.0 39985.0 49114.0 56118.0 39544.0 62057.0 50204.0 False True 46059.67748941359 54214.3656624242 61695.13471952121 59272.673805570135 45076.852740337155 45718.864781920136 53403.357948421704 42494.97408036331 46763.88387119687 46999.93773819316 0.9799944362901677 1.1534986698156504 1.3126641797524428 1.261122389900612 0.9590832437147407 0.9727430924821843 1.1362431636802997 0.9041495824329779 0.9949775706446422 1.0 15.520371225172502 3.2307166992216185 24.999771591470104 0.9926850606437891 1.1848572817984282 0.4551377476403571 0.09753776099279174 158.41170835448926 504881.64884823724 0.029249813079441165 0.03556278317668492 1701.048511372562 -3.2307166992216185 0.19217222115463906 IVRPWAEGTEEGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 IVRPWAEGTEEGAR 14 1 Q13438-4;Q13438;Q13438-8;Q13438-6;Q13438-5;Q13438-3;Q13438-2;Q13438-7;B4E321 Q13438-4 OS9 Protein OS-9 0 ; 139.73 9.2493e-06 664640000.0 387620.0 610020.0 585570.0 588340.0 555940.0 558040.0 585490.0 524620.0 609520.0 621080.0 False True 385533.09698863083 630324.1469351224 668013.1661343186 662823.783676141 626735.6636854577 519464.00828486145 557167.6119109995 563769.808366381 459311.9631495551 581442.1426666602 0.6630635598934498 1.0840702809126894 1.1488901768809168 1.1399651573864964 1.0778985864544808 0.8934061881074713 0.9582511672712082 0.9696060312738446 0.7899529969448359 1.0 19.14927611559243 2.73728775012735 24.959515820484594 0.9275022759689985 1.0396993836485107 0.10820296264512008 0.1397550882009121 242.54850947001512 4756060.68984002 0.044497715582174815 0.04416711806290473 546.1195832351771 -2.73728775012735 0.11219710767951219 IVSGIITPIHEQWEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IVSGIITPIHEQWEK 15 0 Q5QPM7;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 0 ; 270.75 2.2212e-33 1149760000.0 1066270.0 1159100.0 1039660.0 1074660.0 1052090.0 1249700.0 1161940.0 1139050.0 1396460.0 1249830.0 False True 1060529.3207937337 1197679.9428092546 1186035.0911132828 1210711.8458126283 1186067.4252740096 1163311.1804773717 1105732.5231581505 1224051.6949787026 1052321.1446053083 1170064.7793667014 0.9063851331101054 1.023601397058973 1.013649083391114 1.0347391590300898 1.013676717895884 0.9942280128344816 0.9450182098093998 1.0461401082777841 0.8993699863138159 1.0 20.158156974589243 0.03941201265881754 7.943567289641461 0.999999981888303 0.9928665393869607 0.0 0.04991287800943241 0.0 2.347398827317205e-18 0.044852113225933306 0.010571744483995702 1.0949946887861417 -0.03941201265881754 -0.007133442501342291 IVSRPEELREDDVGTGAGLLEIK ddPTM_BT-474_Trastuzumab_2h_R1 4 IVSRPEELREDDVGTGAGLLEIK 23 2 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ;;; 261.74 4.8886e-44 3817750000.0 2327722.0 2189680.0 2133720.0 2143760.0 2046690.0 2484960.0 2415690.0 2491890.0 3518050.0 2551990.0 False True 2315189.8033862268 2262562.17511049 2434129.2293732916 2415159.796195337 2307323.8398179486 2313180.564166639 2298833.8458680455 2677847.485361028 2651073.716954806 2389119.813331437 0.9690555452545009 0.947027504642192 1.0188393297777278 1.0108994043407098 0.965763134583263 0.9682145496676006 0.9622095271406691 1.120851064236491 1.109644523544466 1.0 21.188047775468668 1.750457397859766 12.803171015156988 1.0857344058458296 0.9783358884234512 0.6038874945360397 0.036671092803899276 0.08334749524792484 78.88441707987877 0.016746030479372037 0.009202824506790773 56.29338936555479 -1.750457397859766 -0.10739851742237838 IVTDRETGSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 IVTDRETGSSK 11 1 P19338;H7BY16 P19338 NCL Nucleolin 0 ;;; 142.08 3.4494e-05 1566460000.0 622790.0 1046160.0 911000.0 1278260.0 1123540.0 1063820.0 1224290.0 969570.0 1924610.0 1329980.0 False True 619436.9678384732 1080980.8031829249 1039260.8814460493 1440087.5849370505 1266616.159256681 990280.6273629178 1165066.4154580212 1041924.2367767005 1450315.6539527248 1245099.5377468343 0.4974999580832091 0.8681882615899905 0.8346809631997164 1.1566043848534968 1.0172810452960122 0.7953425387619661 0.9357215067048831 0.8368200334104972 1.1648190445699265 1.0 20.247829650471772 4.948574343291199 1.5538923383506906 0.9586836643976626 0.11463369238943572 0.5858117749687921 0.11903373127783491 1.3825168591412875 2.0951097599385284 0.031853788959060714 2.067556592526674 88833.0029197136 -4.948574343291199 -0.8440499720082268 IVVPPHLGYGEEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IVVPPHLGYGEEGR 14 0 O95302;O95302-3;O95302-2;C9J4P8 O95302 FKBP9 Peptidyl-prolyl cis-trans isomerase FKBP9;Peptidyl-prolyl cis-trans isomerase 0 152.74 6.582300000000001e-06 119530000.0 92936.0 137790.0 128170.0 120280.0 132500.0 120150.0 129050.0 119030.0 125300.0 113700.0 False True 92435.64290216031 142376.25685418618 146215.22192638894 135507.43566741378 149373.0896109708 111844.31330267747 122807.35848112579 127912.62302209297 94421.49393397948 106443.56865653266 0.8684004498235821 1.33757500477647 1.3736407353852413 1.2730448384783406 1.4033077948838901 1.0507381020226003 1.1537320669639992 1.2016942370171344 0.8870568238711962 1.0 16.699729258913496 1.2492741139295813 21.88977690876469 0.9435285064855407 1.217432888290327 0.31911128346837514 0.1538738392712328 45.574730224866094 93125.87397656789 0.10463803084163244 0.03708324632722677 17.753096506865184 -1.2492741139295813 0.27390438180478627 IVVVAEQRPDASEEDSFQWMSR ddPTM_BT-474_Trastuzumab_2h_R1 1 IVVVAEQRPDASEEDSFQWMSR 22 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 0 70.917 0.015466 75604000.0 27881.0 33321.0 26368.0 27793.0 25764.0 29803.0 27638.0 25380.0 30236.0 29929.0 False True 27730.891793870323 34430.069342030154 30080.385205235405 31311.59095031953 29044.892684807954 27742.788758715767 26301.044352587036 27273.98447702863 22784.742941642526 28018.90559649396 0.9897207333230147 1.228815637479375 1.0735745941839856 1.117516558328302 1.0366176717638242 0.9901453382314567 0.9386892097555058 0.9734136254215958 0.8131917523749966 1.0 14.774112985519972 2.754504297355084 1.2437478778457964 0.9277775150862447 1.1135480443379466 0.5329551905582629 0.07163477155273443 0.3226863510863281 1.0295591371308943 0.031127622289756837 0.029670980930511154 568.2040139254408 -2.754504297355084 0.1857705292517019 IVYGHLDDPASQEIER ddPTM_BT-474_Trastuzumab_2h_R1 4 IVYGHLDDPASQEIER 16 0 A2A274;Q99798 A2A274 ACO2 Aconitate hydratase, mitochondrial 0 ;;; 220.61 1.1329000000000001e-14 1633810000.0 832270.0 1048370.0 1157390.0 996340.0 1272190.0 1836880.0 999070.0 764150.0 1145580.0 1108800.0 False True 827789.1507938895 1083264.361696952 1320340.4517857798 1122476.5418429594 1434195.8556391008 1709900.8091504152 950741.1672819715 821174.7532750766 863267.1589855411 1038035.4347085599 0.7974575078222649 1.0435716599608091 1.2719608672670024 1.0813470372117955 1.3816444098960527 1.6472470514751638 0.915904347281654 0.7910854734025825 0.8316355397134522 1.0 19.98542426215846 2.0263561511150874 24.9944995809468 0.8516441525825866 1.2088067867285628 0.3443493496122332 0.21562123444324882 235.8602273203835 223673.8335741717 0.08520653970246558 0.06292756491448712 106.25665771137811 -2.0263561511150874 0.35716263414597615 IVYLCITDDDFER ddPTM_BT-474_Trastuzumab_2h_R1 1 IVYLCITDDDFER 13 0 P51809;P51809-2 P51809 VAMP7 Vesicle-associated membrane protein 7 0 117.67 0.00056576 0.0 8023.2 7193.4 10078.0 10010.0 5254.1 8857.7 12429.0 4788.2 13488.0 9693.0 False True 7980.00398266132 7432.827970497877 11496.894800453674 11277.264973651581 5923.178491509453 8245.388047782997 11827.761786609182 5145.519797986942 10164.06312994028 9074.38444140519 0.8793989315958051 0.8190999641345245 1.2669613982844827 1.2427581227653246 0.6527361199821765 0.908644338469991 1.303423043511437 0.5670378890394626 1.1200829318584997 1.0 13.147584066233042 1.7363594560000861 24.999999999978826 0.8563821510506416 1.004208141951855 0.038226336153488805 0.23913733812750892 0.8184394858592937 9092.830175617259 0.11070854615218625 0.06139363083005755 54.49535122815191 -1.7363594560000861 0.1478259909012133 IVYPTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IVYPTEK 7 0 Q14847;Q14847-2;F6S2S5;K7ESD6 Q14847 LASP1 LIM and SH3 domain protein 1 0 ; 81.958 0.059999 1049580000.0 3376400.0 3576900.0 3457100.0 3052800.0 2918800.0 4050400.0 3699400.0 3330900.0 4734100.0 3992700.0 False True 3358221.8375533023 3695954.9542182935 3943829.630348128 3439284.166989364 3290491.8789169933 3770405.381616022 3520445.888919624 3579468.671967478 3567444.488689968 3737882.4676775523 0.8984289545197649 0.9887830840531191 1.055097281536125 0.9201156528408141 0.8803090807083255 1.0087008926095735 0.9418289417502665 0.9576193748519597 0.9544025312562912 1.0 21.833789775655895 IWDDGDDFCIFSESR ddPTM_BT-474_Trastuzumab_2h_R1 1 IWDDGDDFCIFSESR 15 0 Q6P158-2;Q6P158 Q6P158-2 DHX57 Putative ATP-dependent RNA helicase DHX57 0 210.91 3.8249e-09 27165000.0 18458.0 19162.0 17960.0 22134.0 18467.0 19138.0 23748.0 19083.0 24195.0 19649.0 False True 18358.624178876587 19799.79558632638 20488.611888881525 24936.162130549863 20818.66298751546 17815.035106006188 22599.218513830117 20507.070361510552 18232.466446389746 18394.983997644762 0.9980233840500851 1.0763692748447886 1.1138151515383121 1.3555957501100633 1.131757602517133 0.9684724438078973 1.2285533119639382 1.1148186029482936 0.9911651159209585 1.0 14.167024800816652 1.259542113123001 6.404367460482148 0.9945109972775438 1.1292808296455539 0.19477710677738358 0.10361499844952687 0.2358882800947452 34.59893879455722 0.0790842843391051 0.0261930540755844 18.17783316269376 -1.259542113123001 0.1347698323680101 IWDILGDRPSLVHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWDILGDRPSLVHSR 15 1 Q13610;B4DJV5 Q13610 PWP1 Periodic tryptophan protein 1 homolog 0 ; 127.83 4.5503e-05 362720000.0 212943.0 334390.0 320300.0 346270.0 293090.0 304240.0 336930.0 264560.0 362750.0 310760.0 False True 211796.5385481913 345519.96900697623 365395.4559024913 390107.7464961367 330413.2742194676 283208.6049039252 320631.40870240773 284302.81060845935 273355.12310096674 290927.0307449785 0.7280057064681914 1.1876516531385937 1.255969426308793 1.3409126869276655 1.1357255919925227 0.9734695472562701 1.102102502752546 0.9772306474253819 0.9396002922141153 1.0 18.150297821442294 2.785180120221824 6.8441557566678775 1.004125277417344 1.1522780175079221 0.142314502596681 0.15596335471221767 0.44354735435649273 53.5460568988065 0.04906382209980913 0.051735759324933475 609.7897503067353 -2.785180120221824 0.14815274009057822 IWDLEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 IWDLEGK 7 0 P63244;J3KPE3;H0YAF8;H0Y8W2;D6RAC2;D6REE5;H0YAM7;D6RF23;H0Y9P0 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ;;;;; 143.0 0.0057020000000000005 3503930000.0 4589550.0 4442390.0 3906010.0 3927270.0 3794560.0 4889000.0 4795120.0 4371040.0 6127660.0 4755590.0 False True 4564840.372746942 4590252.265668537 4455942.25635246 4424461.979327931 4277774.7238808 4551034.937468089 4563161.726462742 4697229.20049138 4617580.299437266 4452084.174734566 1.0253266096477383 1.031034474082514 1.0008665787677125 0.9937956708987241 0.9608476740302966 1.0222257169563562 1.0249495623552083 1.0550629808726446 1.037172730390383 1.0 22.086049439031026 2.36787571324849 3.4409597429488925 1.0360758365909122 1.002662508233218 0.2188168979844043 0.02239168025656455 0.304220016280842 7.0794659300691425 0.008748541407996534 0.007107460913353683 233.27903668816754 -2.36787571324849 -0.03341332835769428 IWDLNMENRPVETYQVHEYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWDLNMENRPVETYQVHEYLR 21 1 P63151;P63151-2;A0A590UJY3;A0A590UJJ1;E5RFR9 P63151 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 ; 238.28 4.163e-30 564780000.0 293660.0 361210.0 354400.0 401490.0 327070.0 343070.0 336250.0 340950.0 396940.0 374050.0 False True 292078.96718869335 373232.65649394365 404296.4394999778 452318.59283430275 368720.425804228 319354.378399913 319984.3029002604 366393.4203090194 299119.4557234945 350177.8087596833 0.8340875974500673 1.0658375464051242 1.1545461459479134 1.2916826295658148 1.0529520048978032 0.9119777736089397 0.9137766440244538 1.0463067937022372 0.8541930648974144 1.0 18.417728135573338 2.920010010364886 6.0368004390348755 0.9551177924457079 1.099447214878005 0.2483096104871516 0.11652811155166498 0.339870848554735 20.370584041133714 0.037251370644890335 0.03983241831472878 831.7829432431291 -2.920010010364886 0.14432942243229707 IWDPTPSHT(ph)PAGAATPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 IWDPTPSHT(0.633)PAGAAT(0.367)PGR 111.45 0.00112 343440000.0 397780.0 425210.0 363480.0 361060.0 372730.0 411990.0 366250.0 369410.0 411580.0 331070.0 True False 395638.39667751273 439362.8578051274 414654.82457520324 406770.15897968435 420194.95615620486 383510.1010201421 348533.0882891315 396977.2500259709 310151.6238894437 309940.8291567127 1.2764965421108476 1.4175701181433447 1.3378515689701047 1.312412308137734 1.3557263729966513 1.2373655386532867 1.1245149251146442 1.2808162483983379 1.0006801128244527 1.0 18.241633291129148 1.6177797774953295 0.5537864250962369 0.9886616771413449 1.359039975571724 0.7420956383922288 0.07011872751780714 0.38761736022630655 0.27635734924966615 0.06760154082632522 0.03926005580130564 41.47436806398669 -1.6177797774953295 0.37037829843037906 IWDPTPSHTPAGAAT(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 IWDPTPSHT(0.001)PAGAAT(0.999)PGR;IWDPTPSHT(0.028)PAGAAT(0.972)PGR 174.0 2.5444e-11 1449670000.0 1365260.0 1369530.0 1253800.0 1252260.0 1309040.0 1396810.0 1190360.0 1242670.0 1423660.0 1229250.0 True False 1357909.5918546442 1415113.9781516325 1430324.1417750362 1410795.987602891 1475738.484712039 1300251.8124370605 1132777.7391832094 1335404.345550402 1072818.0690666363 1150798.212586127 1.1799719333966352 1.2296803754774026 1.242897430784799 1.2259282054605254 1.2823607723509503 1.129869509890074 0.984340892081835 1.1604157279228124 0.9322382128624878 1.0 20.134203454729224 2.4989029936263965 4.753592846484792 1.044911100887552 1.2311810660608125 0.7241872680623087 0.06108537698532961 0.11103863912160906 6.529900352026746 0.020368302860786638 0.01818941554542488 315.42999831100207 -2.4989029936263965 0.18626996517326044 IWDPTPSHTPAGAAT(ph)PGRGDT(ph)PGHATPGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 4 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 IWDPTPS(0.001)HT(0.132)PAGAAT(0.866)PGRGDT(0.997)PGHAT(0.003)PGHGGATSSAR;IWDPTPS(0.012)HT(0.303)PAGAAT(0.684)PGRGDT(0.835)PGHAT(0.165)PGHGGATSSAR;IWDPTPS(0.001)HT(0.095)PAGAAT(0.904)PGRGDT(0.881)PGHAT(0.119)PGHGGATSSAR;IWDPTPSHTPAGAAT(1)PGRGDT(0.877)PGHAT(0.123)PGHGGATSSAR 181.84 3.1177e-23 3055800000.0 592072.0 844050.0 834870.0 891250.0 935080.0 869820.0 851480.0 560227.0 838480.0 739050.0 True False 588884.3501373837 872143.6940110003 952412.4391798726 1004082.1586180776 1054156.8953466164 809691.3907360386 810290.6594305245 602033.9835150648 631847.8390563702 691883.1962674616 0.8511326092529329 1.2605360250342823 1.376550903848947 1.4512307337927153 1.5236052863164355 1.1702717960258653 1.1711379374464386 0.8701381776040941 0.9132290572527743 1.0 19.400168977054587 1.9919733446244763 2.2281987975755686 0.9155672137298757 1.2995139639722213 0.4289079801641664 0.17563556358649063 0.2864824395413368 2.6491578935277453 0.10183791315644948 0.05425140555991569 98.16876888419459 -1.9919733446244763 0.3839467502423456 IWDPTPSHTPAGAAT(ph)PGRGDTPGHATPGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 IWDPTPSHT(0.001)PAGAAT(0.999)PGRGDTPGHATPGHGGATSSAR;IWDPTPSHT(0.007)PAGAAT(0.99)PGRGDT(0.002)PGHAT(0.001)PGHGGATSSAR;IWDPTPSHT(0.001)PAGAAT(0.999)PGRGDTPGHATPGHGGATSSAR 144.29 2.3393e-13 5643600000.0 763690.0 1229280.0 1241720.0 1474170.0 1407230.0 1459990.0 1380380.0 805040.0 1289790.0 1182910.0 True False 759578.3778939347 1270195.8416845484 1416543.3827762778 1660799.770849944 1586432.3991943132 1359064.327746784 1313605.745836316 865116.1727102901 971938.5368005385 1107415.6710597964 0.6859017781164488 1.1469910304492725 1.2791433422832517 1.4997076655602672 1.4325536839081372 1.2272395661930267 1.1861903169378087 0.7812027545920261 0.8776637013546988 1.0 20.07876541205398 1.8140073887309964 5.752929019512302 0.8712057826053273 1.231761245050401 0.3247322110547989 0.21102425294597016 0.2467055047813195 13.250506483907579 0.10292314003693831 0.05974782500126859 65.16394804275154 -1.8140073887309964 0.36055546244507364 IWDPTPSHTPAGAATPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;; 194.05 9.250100000000001e-15 1388700000.0 224610.0 314217.0 264028.0 289222.0 247453.0 264414.0 282179.0 240693.0 318486.0 268814.0 False True 223400.72471651726 324675.5228968122 301200.8474274838 325837.4755454 278964.67278115894 246135.68254360548 268528.92374153936 258654.73387428897 239999.39279375455 251658.06037675566 0.8877153562340323 1.2901455348211082 1.1968654887372094 1.2947627231076597 1.1085068062732533 0.9780560263999386 1.0670388357103542 1.0278023024061245 0.9536725842774637 1.0 17.941105281210007 2.973829505094317 6.185491530704564 1.0160171251448185 1.1812655684675475 0.3260039574706042 0.109337229147924 0.20151792250830153 26.74538906195072 0.031923050208851604 0.03517611112832941 941.5199029920243 -2.973829505094317 0.16524844332272903 IWDPTPSHTPAGAATPGRGDT(ph)PGHAT(ph)PGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 IWDPTPS(0.004)HT(0.01)PAGAAT(0.442)PGRGDT(0.529)PGHAT(0.72)PGHGGAT(0.1)S(0.099)S(0.096)AR 55.574 0.027510000000000003 416030000.0 176050.0 236600.0 218640.0 239940.0 256590.0 273140.0 244840.0 205090.0 267220.0 248510.0 True False 175102.16636099375 244475.0879722799 249422.61154705234 270316.37939839734 289265.21557191724 254258.47470240007 232996.15382037096 220394.8572259181 201367.21156454954 232649.87903988487 0.7526424130698762 1.0508283476492493 1.0720943100266647 1.161902084428142 1.2433499504305627 1.0928803219313545 1.0014883944144528 0.9473241857483803 0.8655375725771501 1.0 17.827800911441262 -0.942945072230192 5.32512103771058 0.9999999314694509 1.0293261336459285 0.0 0.13438489758761393 1.1563335195153139e-07 2.2857568251350787e-08 0.1361404319282429 0.03208853198784074 0.11403940107583553 0.942945072230192 0.029326202176477634 IWDPTPSHTPAGAATPGRGDT(ph)PGHATPGHGGATSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 IWDPTPSHTPAGAAT(0.063)PGRGDT(0.912)PGHAT(0.024)PGHGGATSSAR 108.68 9.4813e-06 1088700000.0 182030.0 379670.0 359700.0 443260.0 404590.0 333670.0 403230.0 251450.0 328150.0 385900.0 True False 181049.9707054342 392307.0864346385 410342.633431552 499376.6705515279 456112.13830719085 310604.17827469314 383724.22441181296 270214.4758372283 247281.82948471984 361271.53161438834 0.5011465196174997 1.0859064501472446 1.1358288642281973 1.382275177675913 1.2625189044622338 0.8597527097878939 1.062149078553441 0.7479539686665598 0.684476378140589 1.0 18.462724048562503 1.939425018013676 1.9882280279357267 0.7880704230732954 1.0757798308989954 0.14029131680502482 0.23975387171459514 0.5559374644307147 4.0652200569994745 0.14926842375121233 0.0733730849184108 86.9811245098033 -1.939425018013676 0.2877094078257 IWDYQNK ddPTM_BT-474_Trastuzumab_2h_R1 2 IWDYQNK 7 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ; 145.04 0.0053813 1123620000.0 2630600.0 2152100.0 1896390.0 1905910.0 1764810.0 2219900.0 2101600.0 2105000.0 3175000.0 2312700.0 False True 2616437.141887135 2223731.347528077 2163385.2282826267 2147198.0105826454 1989548.0926516054 2066443.5380825102 1999937.5791083644 2262085.7889734134 2392563.79282031 2165101.5059979134 1.2084593422705125 1.027079488591063 0.9992072991910392 0.9917308748039432 0.9189167746362109 0.9544326362334079 0.9237153886633026 1.0447943353726499 1.1050584862613901 1.0 21.0460032334295 4.800114436176337 2.252498547868102 0.9889529134962725 1.2872516132470975 0.6045214162253789 0.052148932259950126 0.5532477039102625 2.8409310692873047 0.014060536560498705 0.3473697173252749 63112.362303694725 -4.800114436176337 0.298298699750825 IWEDLDDDDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 IWEDLDDDDPK 11 0 O75717;C9JYB3 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 0 ; 156.12 7.2611e-05 70061000.0 239690.0 178623.0 149934.0 128722.0 123869.0 218705.0 210403.0 173437.0 291450.0 204849.0 False True 238399.53567206234 184568.35857511638 171043.40395030985 145018.19200183582 139642.9829209158 203586.43812619292 200225.00307248603 186379.74963524105 219626.05272991487 191775.36143994782 1.2431186878337044 0.9624195579102677 0.8918945722017062 0.756187817418071 0.7281591434499438 1.0615880820015746 1.0440601001562138 0.9718649373715489 1.1452255966608524 1.0 17.549057854794388 IWEQIQPDLHTNDECVATYK ddPTM_BT-474_Trastuzumab_2h_R1 4 IWEQIQPDLHTNDECVATYK 20 0 Q12904;Q12904-2 Q12904 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 ;;; 264.96 1.3344999999999996e-36 1319020000.0 835660.0 825540.0 736350.0 735520.0 736210.0 863630.0 840918.0 788122.0 1018060.0 936530.0 False True 831160.8994105546 853017.5998505313 840021.679531063 828636.7565854352 829961.9796414567 803929.2908663453 800239.5837212821 846935.6656424257 767172.7543050864 876759.8535963283 0.9479915121583931 0.9729204597491433 0.9580977916420657 0.9451125678103305 0.9466240684231673 0.9169321423292323 0.9127237982428457 0.9659836295747706 0.8750089903846154 1.0 19.741822213949316 3.4287261667733477 1.803991536762951 0.9336244738702081 0.9610978440115753 0.09960995649449822 0.03168338427415189 0.7382467354130657 4.864147193627328 0.00924535728319226 0.015169447157023782 2683.6518043982664 -3.4287261667733477 0.027473370141367193 IWEVIGDHFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 IWEVIGDHFNK 11 0 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 204.17 3.4106e-08 336960000.0 565300.0 557820.0 512470.0 500200.0 456320.0 597470.0 566890.0 515280.0 686520.0 592660.0 False True 562256.4876107345 576386.701490689 584621.3215309075 563525.2687133383 514429.6471794585 556168.3051930979 539467.3649698995 553732.810138823 517336.3448966933 554835.9313982468 1.0133743252600587 1.0388416987308877 1.0536832393994353 1.0156610933491517 0.9271743556388642 1.0024013833990408 0.9723007008763531 0.998011806379151 0.9324131975248062 1.0 19.081701694635278 3.4644975375349563 24.859232371398104 0.9748175616424187 1.0354903229766221 0.5515733757072316 0.02615084407491539 150.0371746156197 295459.51758593565 0.006871075498890691 0.009309527454234048 2914.053611937112 -3.4644975375349563 0.06067276133420341 IWGDCTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWGDCTVR 8 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 110.12 0.008112300000000001 369440000.0 406720.0 507210.0 492170.0 414520.0 379710.0 439830.0 467130.0 384480.0 595340.0 456620.0 False True 404530.26471083984 524092.1782350798 561463.2579816716 466998.1894983065 428063.8177825042 409425.58734845306 444533.13729010685 413171.8499498807 448626.43414729 427478.1206679499 0.9463180573516764 1.2260093625754858 1.3134315672211834 1.092449336982686 1.00137012185241 0.9577696905486318 1.0398968176324623 0.9665333264408593 1.049472271110145 1.0 18.705491055811667 3.4163582479818926 4.301390408120928 0.9999902046495673 1.1734276860450985 0.38546285586666607 0.09023581959100384 0.1956646574284428 7.354974153784658 0.025198597603686913 0.03527541193493372 2608.304243771434 -3.4163582479818926 0.17343748139553117 IWGEDLR ddPTM_BT-474_Trastuzumab_2h_R1 8 IWGEDLR 7 0 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ;;;;;;; 128.38 0.0087545 5993250000.0 6495570.0 7890990.0 7226670.0 7596460.0 7343590.0 7846050.0 7722610.0 6857530.0 8510080.0 7493080.0 False True 6460598.572845679 8153636.831945808 8244122.320658311 8558171.057117412 8278752.657631918 7303671.031115046 7349037.851064916 7369273.710431775 6412884.813229698 7014865.219251466 0.9209868430708165 1.1623369198269295 1.1752360256378547 1.2200050592034934 1.180172733028692 1.0411705432445069 1.0476377836734985 1.0505224947455407 0.9141850360332363 1.0 22.741983954083743 2.5988728752429866 4.4686610069100166 1.016436402306127 1.1403944338367904 0.34055991956355913 0.08412520024245403 0.282400919301745 9.036652674074414 0.02858452697968584 0.02668214756793989 397.0753023329631 -2.5988728752429866 0.12395803153066343 IWGLDFGDCHK ddPTM_BT-474_Trastuzumab_2h_R1 1 IWGLDFGDCHK 11 0 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 0 104.14 0.0026394 238440000.0 309200.0 318260.0 284350.0 299620.0 311050.0 378330.0 379360.0 327340.0 455710.0 377300.0 False True 307535.3015553498 328853.09170776693 324384.00838549307 337551.8612792691 350660.3737622078 352176.9375930249 361008.9075040677 351767.77299883985 343406.37670114834 353220.39097721817 0.87066123420713 0.9310138941808066 0.9183615008410289 0.9556409253310644 0.9927523515617889 0.997045885767505 1.0220500195509716 0.9958875024899907 0.9722156066672187 1.0 18.430209104831356 3.807172001193023 0.9668277800657319 1.00086559923448 0.8836514364527868 0.8609752231849437 0.016506120149464842 0.2434086755507337 0.40297327096564767 0.006088149028490009 0.021957682078960344 6414.635762545753 -3.807172001193023 -0.11721416278169317 IWHHTFYNELR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWHHTFYNELR 11 0 P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;A6NL76;Q6S8J3;A5A3E0;P0CG38;P0CG39 P60709;P63261;P68133;Q6S8J3 ACTB;POTEKP;ACTG1;ACTA1;ACTC1;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ; 170.72 8.896699999999999e-06 3759500000.0 711800.0 1423950.0 3144900.0 975200.0 222990.0 602140.0 1033920.0 328620.0 3556100.0 736080.0 False True 707967.7478884148 1471345.314954046 3587674.5840391666 1098660.2200104909 251386.4547347203 560515.4790850953 983905.3396420429 353143.2930985481 2679746.8042986845 689102.7442102063 1.0273761842290006 2.1351610152712173 5.206298500742539 1.5943344141949196 0.364802573849621 0.813398994263929 1.4278064452779322 0.512468272787525 3.8887478345046977 1.0 19.39435957712206 3.4978860048391347 24.94607670275649 1.2173785243435968 2.83685846080034 0.1889010526511662 1.341476146494351 1094.1918784506804 1314522.8097509174 0.35352692538981856 0.5408606679503339 3146.922190350578 -3.4978860048391347 1.6194799364567432 IWHVIGDHFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 IWHVIGDHFNK 11 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 ; 178.08 4.4538e-06 535120000.0 742820.0 763640.0 701360.0 625780.0 639310.0 792760.0 779800.0 441440.0 913420.0 729360.0 False True 738820.7396550609 789057.2957698725 800105.3916695962 705003.6838373311 720722.3390127532 737958.3671563098 742078.0948747143 474382.49438690004 688319.880200923 682811.6203634874 1.08202719113327 1.1556002742745157 1.1717805728667428 1.032501004394199 1.0555214901426024 1.08076421834102 1.086797694625755 0.6947487128797949 1.0080670270879446 1.0 19.381128085377334 1.7778886056141139 24.999999999999538 0.8694044241434876 1.095813352516988 0.48053350641478476 0.09069858283252968 36.835277147215365 23424.588680271736 0.040221016616083224 0.022340595871968377 59.96372525403397 -1.7778886056141139 0.22640892837350035 IWNSSLQTNKEPVGILTSNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWNSSLQTNKEPVGILTSNHR 21 1 P43155-2;P43155;P43155-3 P43155-2 CRAT Carnitine O-acetyltransferase 0 ; 232.29 1.3494e-26 903450000.0 209845.0 327970.0 293060.0 330130.0 328040.0 416270.0 394970.0 349870.0 328210.0 361480.0 False True 208715.217835971 338886.2831879481 334320.30067681643 371924.4241510089 369813.94955458835 387494.2346941783 375863.7921680767 375979.0760038619 247327.04328867898 338410.03692140215 0.6167524454496202 1.001407305382779 0.9879148494477556 1.0990348499544966 1.092798407868972 1.145043563776379 1.1106756631316268 1.111016326301177 0.730850200362474 1.0 18.36841283249868 5.008785396904632 1.71568555972565 1.056057551146085 0.15651047976007432 0.5368014958177059 0.11437241474410577 1.5588588688165521 2.5228436191960832 0.029100893893643526 2.864943184820352 102043.5119367393 -5.008785396904632 -0.8995470713860108 IWNVHSVLNVLHSLVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 IWNVHSVLNVLHSLVDK 17 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ; 244.88 8.860899999999998e-21 85351000.0 117677.0 121726.0 109666.0 107491.0 93364.0 111511.0 125280.0 92776.0 176388.0 128682.0 False True 117043.44010714382 125777.57632507924 125106.01956604006 121099.34957869955 105253.35198821645 103802.50703865885 119219.72778392461 99699.41622698236 132919.54087810693 120469.40458979715 0.9715615388461587 1.0440624053331766 1.0384879048089493 1.0052290869291451 0.8736936348827162 0.8616503700014978 0.9896266042807488 0.8275911760870954 1.1033468732638212 1.0 16.878307268600263 3.3713622521911195 7.019493788799424 0.9267034569848489 1.0207556009546885 0.15404671359571198 0.07791246183713765 0.3049127281831769 18.044294105145998 0.020695115434303822 0.02807217609728954 2351.593505947997 -3.3713622521911195 0.09405214396983963 IWSTVPTDEEDEMEESTNRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 IWSTVPTDEEDEMEESTNRPR 21 1 Q9GZL7 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 0 ;;; 271.2 1.0751999999999998e-44 1342570000.0 329308.0 437600.0 372049.0 363220.0 407463.0 384787.0 411769.0 364950.0 431729.0 417780.0 False True 327535.0423175584 452165.2514652138 424430.26529212075 409203.614758214 459350.9978275849 358187.58038116875 391850.16035966465 392184.4221785498 325335.1728222114 391116.9227205466 0.8374351077403583 1.1560871575692118 1.0851748943509063 1.0462436959052022 1.1744595315191504 0.9158069098357426 1.0018747274702864 1.0027293614670976 0.8318105249939893 1.0 18.57724043392068 2.713860897630043 24.986437792297306 0.9592388915133971 1.0658726265351781 0.23360940893915372 0.09816638527111744 1157.110403582345 1170541.2502525111 0.030491839981240818 0.028758460564180806 517.4410715953586 -2.713860897630043 0.10663373502178097 IWTVDDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 IWTVDDYR 8 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-2;Q676U5-4;Q676U5-5 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 0 ; 87.323 0.035841000000000005 261770000.0 413940.0 467480.0 444370.0 438080.0 419040.0 468760.0 413460.0 405210.0 492370.0 460530.0 False True 411711.393033058 483039.78920237254 506933.4334667198 493540.8830826451 472402.26015533024 436355.7245423476 393459.360229417 435448.82781468774 371032.0109199806 431138.5811204301 0.9549398060436036 1.1203817295753564 1.1758015999155453 1.1447383850455826 1.0957086209442572 1.0121008502842852 0.9126053140660865 1.0099973578867758 0.8605864266560271 1.0 18.717792144586237 2.59840057903147 2.9377806315150026 0.9523399474504186 1.107266717649507 0.5294415440352751 0.06743121703354542 0.21140288881214137 3.5133918024753608 0.0237464445739553 0.02185948674183277 396.6437167793693 -2.59840057903147 0.1549267701990884 IWYEHR ddPTM_BT-474_Trastuzumab_2h_R1 10 IWYEHR 6 0 O75874;P48735;P48735-2;H0YL11 O75874;P48735 IDH1;IDH2 Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial 0 ;;;;;;;;; 140.01 0.011834 19114130000.0 6953160.0 8733030.0 8608620.0 8684720.0 8299600.0 9218140.0 8017830.0 7036730.0 9423200.0 8261360.0 False True 6915724.959128701 9023703.624321876 9820638.868533589 9784204.661535589 9356504.864416707 8580911.678967495 7629976.931814999 7561846.52439093 7100978.624410826 7734112.931893863 0.8941846363025938 1.166740607977162 1.2697821915730414 1.2650713466036392 1.2097709132009749 1.1094888004003163 0.9865354952796942 0.9777264168470385 0.9181374369551647 1.0 22.882804399828903 2.3173168817647705 2.8234925565571394 0.9660248645899007 1.1728616207616138 0.44548054546075 0.10041172971459175 0.24571681685728808 3.999859572583133 0.041625998805779954 0.03199983632315962 207.64280248117055 -2.3173168817647705 0.20683675617171315 IYASS(ph)SPPDTGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IYASSSPPDTGQR 13 0 A0A494C0H7;A0A494C094;F8WDA1;A0A494C188;A0A494C155;A0A494C1K7;Q9UGJ0-3;Q9UGJ0;E9PGP6 A0A494C0H7 PRKAG2 5-AMP-activated protein kinase subunit gamma-2 1 IYASS(0.5)S(0.5)PPDTGQR 237.07 5.5316e-09 0.0 107040.0 169020.0 149970.0 157920.0 144780.0 138960.0 154400.0 131220.0 153770.0 151220.0 True False 106463.70853326195 174645.7285252525 171084.4724373919 177912.6558080977 163216.8748217083 129354.02227665464 146931.08213472192 141012.30272165858 115875.4439124345 141569.0101340446 0.7520269332423586 1.2336437781113905 1.2084881590639123 1.256720348893032 1.152913866298609 0.9137170780114645 1.0378760294756617 0.9960675898499333 0.8185085408361465 1.0 17.111145964299592 2.7460738794117407 24.324538795776295 0.9636383737151357 1.1394573186361276 0.24504069379552218 0.1446064349700923 559.0568600413443 1809973.4515240006 0.04415953148898904 0.04598429974039446 557.280541886023 -2.7460738794117407 0.17581894492099193 IYASSS(ph)PPDTGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 IYASSSPPDTGQR 13 0 A0A494C0H7;A0A494C094;F8WDA1;A0A494C188;A0A494C155;A0A494C1K7;Q9UGJ0-3;Q9UGJ0;E9PGP6 A0A494C0H7 PRKAG2 5-AMP-activated protein kinase subunit gamma-2 1 IYAS(0.004)S(0.261)S(0.735)PPDTGQR 160.07 1.0358e-06 0.0 150260.0 210330.0 180510.0 186250.0 195250.0 210100.0 215350.0 178340.0 219480.0 213490.0 True False 149451.0168554556 217330.7069028299 205924.23897895354 209829.2309033575 220113.9301625817 195576.28152220167 204932.69778311075 191648.63639217053 165392.09488132357 199864.88542201533 0.7477602508309016 1.0873881444653744 1.0303172492964128 1.049855408369021 1.1013136684706293 0.9785424843850972 1.0253561917612226 0.9588909827131656 0.8275195241630247 1.0 17.608665499408318 -0.819851190239553 6.228728490553223 0.9999999997556619 0.9889864003548334 0.0 0.10691715120095109 7.363970680365962e-10 1.1822590828206503e-10 0.0988375362229539 0.0232962294846808 0.151407995472483 0.819851190239553 -0.011013599400828467 IYDALDVSLIER ddPTM_BT-474_Trastuzumab_2h_R1 4 IYDALDVSLIER 12 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ;;; 192.5 9.3319e-06 181683000.0 334071.0 375655.0 349586.0 369970.0 362577.0 372565.0 393390.0 335877.0 426224.0 394107.0 False True 332272.39885477745 388158.4495867568 398804.67014401656 416808.1640661209 408749.03178775107 346810.45847367484 374360.2228042631 360941.8472888478 321186.80630899087 368954.75384802156 0.9005776328651015 1.052048918027075 1.0809040024140486 1.1296999421175935 1.107856796869248 0.9399809999914832 1.014650763812812 0.9782821430660453 0.8705316924613822 1.0 18.493084379065447 2.7299581102915544 24.692413571317473 0.965445458908103 1.0597730417306808 0.3172499582893027 0.06818225716348791 686.5989415140041 1970789.7983891054 0.022630160974199346 0.021653207065589087 536.9799996714193 -2.7299581102915544 0.0943275828225778 IYDDDFFQNLDGVANALDNVDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 IYDDDFFQNLDGVANALDNVDAR 23 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;;;; 355.19 8.378599999999994e-102 570898800.0 367680.6 460533.1 401735.6 414167.5 429587.5 444659.7 424968.4 394434.7 497106.4 455523.8 False True 365701.04850275535 475861.6658353618 458296.4805315678 466601.0630344494 484292.92176040006 413921.4215553446 404411.05495505966 423869.4202128227 374601.188604489 426451.8810904537 0.8575435230057934 1.1158625086107379 1.0746733707908294 1.09414703914855 1.135633217332855 0.9706169439256118 0.9483157957258043 0.9939443088607616 0.8784137325097957 1.0 18.70202343795318 2.5941890726913677 7.770435682063281 0.9587769498440283 1.0619695398888531 0.2794976223265285 0.07799508961297194 0.3533345001574095 21.44185738042539 0.024614550801161483 0.02316862676247594 392.8159129279819 -2.5941890726913677 0.10319259004482484 IYDGGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 IYDGGAR 7 0 P56856-2;P56856 P56856-2 CLDN18 Claudin-18 0 80.555 0.094157 0.0 137480.0 213240.0 238160.0 204910.0 229690.0 232390.0 213580.0 138000.0 226230.0 192050.0 False True 136739.82295546378 220337.5644936978 271690.8578761704 230851.58499010463 258939.66002070866 216325.4262872179 203248.31944516744 148298.26074980103 170478.64782668938 179793.20457772273 0.7605394390551206 1.225505519027824 1.5111297366009253 1.2839839277146312 1.4402082694330738 1.203190225099429 1.130456069919513 0.8248268398024645 0.9481929432599508 1.0 17.455978968552312 1.9830458413237375 3.121798933978298 0.9109294080712753 1.2597212390889094 0.3409594642848125 0.19197027043830753 0.2696265804696512 5.08566418855421 0.09602214548021897 0.055829699688387094 96.17137853292184 -1.9830458413237375 0.3487918310176341 IYDMDKDGYISNGELFQVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 IYDMDKDGYISNGELFQVLK 20 1 F6U1T9;D3YTA9;H7BYZ3;P63098 F6U1T9 PPP3R1 Calcineurin subunit B type 1 0 218.69 8.8645e-25 197170000.0 309720.0 222320.0 197210.0 167590.0 189890.0 300360.0 204120.0 282310.0 442100.0 312230.0 False True 308052.50193312706 229719.78680472204 224975.45381995113 188806.87681661034 214071.36593379077 279596.8201713875 194245.935785877 303377.4057411328 333150.3788364911 292303.2140864485 1.0538799680869084 0.7858955212746397 0.7696646597714618 0.6459281585619884 0.732360629707203 0.9565300916899837 0.6645357506347122 1.037885972924708 1.139742441347094 1.0 18.157106167149326 1.6182081073337224 6.184275765738768 1.0752816463536885 0.7973828546059271 0.48762980359421637 0.1212448753552553 0.10572520578996487 8.587424333865135 0.06404488772304982 0.030852490849067597 41.515292997079726 -1.6182081073337224 -0.27789879174776144 IYEDGDDDMK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYEDGDDDMK 10 0 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ; 193.1 1.4184999999999996e-06 2242300000.0 3933300.0 2864100.0 2360800.0 2211100.0 2145000.0 3334100.0 3149600.0 2912800.0 4521100.0 3057000.0 False True 3912123.549830715 2959429.83711499 2693180.119558546 2491025.0332908095 2418153.0355889266 3103621.514627194 2997241.8153595864 3130167.9268987034 3406935.4846361983 2861899.642770625 1.366967412611073 1.0340788310277524 0.9410463173863286 0.870409638431357 0.844946831625408 1.0844620364194728 1.0472910267593925 1.093737837665183 1.1904454767456207 1.0 21.44854165179558 -0.05986211241396505 8.243070405735322 0.9999999962265154 1.041677250426816 0.006676702334155071 0.14516811123720388 0.0 0.0 0.14382795849737348 0.03390057492590338 0.8712401629703189 0.05986211241396505 0.04167725420030055 IYEDGDDDMKR ddPTM_BT-474_Trastuzumab_2h_R1 4 IYEDGDDDMKR 11 1 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ;;; 206.11 4.4091e-08 7468200000.0 8798200.0 7404970.0 6413480.0 6657740.0 6183320.0 8751200.0 8442190.0 7958850.0 11652500.0 8909920.0 False True 8750831.468771916 7651439.950051117 7316442.237032501 7500609.201366535 6970729.150591002 8146250.142108971 8033809.017402373 8552779.801221414 8780897.510500375 8341281.2774337195 1.0490991944422474 0.9172979180969618 0.8771364966226722 0.8992154744449733 0.8356904555478097 0.9766185638826999 0.9631384855869597 1.0253556398295638 1.0527036816581143 1.0 22.991837577768916 2.0927315609139803 1.7510390135648128 1.0283710741719772 0.9146615968452978 0.4049949841457302 0.05482997978837311 0.350147474996908 2.0499813415471295 0.03243828221998861 0.017598742495134944 123.80311181997514 -2.0927315609139803 -0.11370947732667935 IYEFPETDDEEENKLVK ddPTM_BT-474_Trastuzumab_2h_R1 5 IYEFPETDDEEENKLVK 17 1 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4 E7EPK1 SEPT7 Septin-7 0 ;;;; 261.78 2.3909e-27 2965740000.0 3050410.0 2165150.0 2022230.0 1777650.0 1767270.0 2845410.0 2939460.0 2624110.0 4506600.0 2791740.0 False True 3033986.93149241 2237215.708889187 2306942.4064617385 2002700.3077334396 1992321.359070042 2648713.5040746685 2797267.0899723405 2819934.4131605867 3396008.8153461446 2613568.763071139 1.1608598076169416 0.8560003243458921 0.8826790551900033 0.7662703717732365 0.7622991930500865 1.0134470313159971 1.070286395176128 1.0789593344569028 1.299376111059569 1.0 21.31758968647034 2.416231788435352 2.8938512656247903 1.1154419178524686 0.8774005710046138 0.4149935029052031 0.12597704722501826 0.2547700361436961 4.362723953499024 0.04797007288095107 0.03945057999673928 260.7544858221897 -2.416231788435352 -0.23804134684785483 IYEKDEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYEKDEEK 8 1 Q9HC38-2;F6TLX2;Q9HC38;I3L3Q4;Q9HC38-3;I3L1I0 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 ; 89.24700000000001 0.012805 1807850000.0 3057300.0 1960390.0 1873650.0 1599230.0 1547280.0 2326000.0 2367900.0 2110900.0 3565300.0 2125100.0 False True 3040839.8364979657 2025640.3960692224 2137443.63394225 1801692.354027252 1744316.9365529285 2165209.094815047 2253355.6307435716 2268426.0769330063 2686679.5875723655 1989474.2986103538 1.5284639960526205 1.0181787206218902 1.0743760979648005 0.9056122792265939 0.8767727925770805 1.08833227769137 1.132638723866671 1.140213813527272 1.3504469946905115 1.0 20.923955830754974 -0.27358594469470143 7.939173850173261 0.9999999997862474 1.107163107677033 0.03201967183156895 0.18478990433793602 0.0 0.0 0.17694004228151716 0.04170516823095947 0.5326158119013807 0.27358594469470143 0.10716310789078554 IYEYVESR ddPTM_BT-474_Trastuzumab_2h_R1 2 IYEYVESR 8 0 Q8WWY3-4;Q8WWY3;E7EVX8;Q8WWY3-3;Q8WWY3-2;E7EU94;E7ESX0;E7EN72 Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 0 ; 128.61 0.0026201 714880000.0 645710.0 821630.0 729540.0 715360.0 678490.0 760050.0 750640.0 672970.0 848540.0 743700.0 False True 642233.5691051256 848977.4578641765 832252.8907246458 805924.5026524861 764891.6797746993 707509.5324652515 714328.6754767323 723190.4386724184 639428.6868534641 696236.4292863972 0.9224360319143003 1.2193809777151854 1.1953595872276574 1.1575442891985888 1.0986091040347743 1.0161914871222821 1.0259857792975278 1.0387138739833643 0.9184073971952922 1.0 19.409217776829127 2.810703527632409 2.688292786919462 1.0052504127584765 1.1355087039699556 0.3479712202291886 0.08108118165945404 0.3134736106118971 4.451258732463836 0.026763363776581818 0.02791791543208309 646.7009927496835 -2.810703527632409 0.13025829121147914 IYGADDIELLPEAQHK ddPTM_BT-474_Trastuzumab_2h_R1 6 IYGADDIELLPEAQHK 16 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;;;;; 232.93 1.2204e-19 3497420000.0 5386940.0 5169450.0 4604720.0 4354150.0 4554080.0 5862720.0 5743930.0 5167420.0 7659450.0 6110910.0 False True 5357937.313585297 5341512.018251483 5253024.551056267 4905384.943558945 5134015.093853066 5457443.965758416 5466074.161956559 5553039.120027079 5771881.17887167 5720906.491986737 0.9365539047160009 0.9336828045928263 0.9182154189050579 0.8574488938824484 0.8974128664826582 0.9539474160961463 0.9554559525859895 0.9706572075256275 1.008910246471662 1.0 22.447812333089548 2.005415844558482 1.1499388992053872 1.00003768561097 0.9095588069664996 0.7046454827074645 0.02354677257720541 0.30020204992066246 0.7335838703894042 0.019802957845263553 0.009244942497659725 101.25485231473004 -2.005415844558482 -0.09047887864447046 IYGFYDECKR ddPTM_BT-474_Trastuzumab_2h_R1 1 IYGFYDECKR 10 1 F8W0W8;P36873;P36873-2;F8VYE8;F8VR82;H0Y3Y6;P62140;E7ETD8;P62136;P62136-2;P62136-3 F8W0W8;P62140;P62136 PPP1CC;PPP1CB;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 76.943 0.055291 633300000.0 264140.0 237220.0 239660.0 195950.0 191280.0 300670.0 283920.0 209440.0 385930.0 299740.0 False True 262717.8995887129 245115.72429748188 273402.04483793705 220757.24990879413 215638.37419461517 279885.3906010494 270185.7049202733 225069.47631477058 290822.72269705305 280610.3365796751 0.9362374272842159 0.8735092487510165 0.974312094737496 0.7867039133325491 0.7684619776413257 0.9974165385799327 0.9628501509015442 0.8020712246673262 1.0363934780231387 1.0 18.098208627576998 2.714640773645396 24.97710423820373 0.9358692928505096 0.8695665950967106 0.2087881898618893 0.08316029997636702 1737.3514883214727 1814140.246774878 0.028246367565677985 0.02664398942671716 518.3710912926306 -2.714640773645396 -0.06630269775379893 IYHLPDAES(ph)DEDEDFK ddPTM_BT-474_Trastuzumab_2h_R1 6 IYHLPDAESDEDEDFK 16 0 Q15019-2;Q15019-3;Q15019;B5MCX3;H7C2Y0 Q15019-2 SEPT2 Septin-2 1 IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK 334.03 7.629199999999997e-72 5651850000.0 8065760.0 5734050.0 4985740.0 4475530.0 4602770.0 6834400.0 5911580.0 5613930.0 8600200.0 5941600.0 True False 8022334.844350175 5924904.387943584 5687688.855171055 5042131.639113575 5188905.476744817 6361954.014447096 5625614.290971362 6032869.963558919 6480795.946775831 5562402.001140321 1.4422429092153992 1.065170116566359 1.022523876196839 0.9064666016731463 0.9328533744380691 1.1437422202032257 1.011364207372657 1.0845800002089294 1.165107438377743 1.0 22.407276582993617 4.739124092295192 4.230015610316235 1.0340749336992787 1.4744193493623574 0.7122945740852462 0.07752158553493202 0.12053816547849042 4.946960709321211 0.019592365719265144 0.16087904869686953 54843.36481644643 -4.739124092295192 0.4403444156630787 IYHLPDAES(ph)DEDEDFKEQTR ddPTM_BT-474_Trastuzumab_2h_R1 16 IYHLPDAESDEDEDFKEQTR 20 1 Q15019-2;Q15019-3;Q15019;B5MCX3;H7C2Y0 Q15019-2 SEPT2 Septin-2 1 IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR 299.48 5.482799999999998e-55 247945420000.0 13551052.0 10666230.0 9496190.0 9304630.0 9445112.0 12930078.0 12493139.0 11073936.0 17458915.0 12362463.0 True False 13478094.64169542 11021249.017677814 10833171.009636858 10482595.203974802 10647891.027635153 12036252.141989665 11888798.1381444 11900329.336627603 13156399.335725198 11573480.027302943 1.1645671491979344 0.9522847917547389 0.936034017778609 0.905742713448795 0.9200250056608524 1.0399855629935852 1.0272448831377936 1.0282412298248746 1.1367712481196663 1.0 23.46431939756205 2.6341102493320108 7.724635301045668 1.0454185257564648 0.9684357483649403 0.17662920766456547 0.07556310549598864 0.48567215930949503 32.038918160187634 0.02480036684053082 0.02335518771061038 430.6359171912844 -2.6341102493320108 -0.07698277739152448 IYHPNIDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYHPNIDEK 9 0 P68036-2;P68036;P68036-3;A0A1B0GUS4 P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 0 ; 130.66 0.00035508 873490000.0 2328300.0 2250000.0 1935480.0 1818140.0 1784910.0 2363600.0 2388900.0 2072400.0 3012300.0 2243400.0 False True 2315764.691498451 2324889.8898462774 2207978.760506259 2048316.3375819076 2012207.7085095695 2200209.8953159284 2273339.7805157844 2227053.0114339706 2269959.0277520106 2100224.291328632 1.102627324643248 1.1069721931344385 1.0513061722133783 0.9752845665288985 0.9580918175346969 1.0476071076789824 1.0824271435683839 1.0603881788383207 1.0808174332256686 1.0 21.002111976600574 4.162383700518979 4.461088342977937 1.0331743918537104 1.1051816176663498 0.355693903613583 0.03976556290935294 0.2514355981303679 9.269372579639272 0.011380586206574554 0.02703999530893947 14533.951296063513 -4.162383700518979 0.07200722581263941 IYHPNINSNGSICLDILR ddPTM_BT-474_Trastuzumab_2h_R1 2 IYHPNINSNGSICLDILR 18 0 P61077-3;P61077-2;P61077;A0A087WY85;H9KV45;D6RAH7;P62837-2;D6RA11;P51668;Q9Y2X8;C9J9H9;A0A087WW00;D6RFM0;D6RAW0;A0A0A0MQU3;P62837 P61077-3;A0A0A0MQU3 UBE2D3;UBE2D2;UBE2D1;UBE2D4 Ubiquitin-conjugating enzyme E2 D3;Ubiquitin-conjugating enzyme E2 D2;Ubiquitin-conjugating enzyme E2 D1;Ubiquitin-conjugating enzyme E2 D4 0 ; 250.55 5.5792e-25 1374960000.0 968010.0 1255790.0 1316510.0 1086040.0 835510.0 1016450.0 1118770.0 845950.0 1615010.0 1149840.0 False True 962798.3417160215 1297588.2110089147 1501863.164689943 1223532.5526458106 941907.2460442437 946185.2039659317 1064650.8209835659 909079.0846470596 1217012.4255252702 1076456.2267724497 0.8944147637129567 1.2054258953933386 1.3951920452845497 1.1366301036822848 0.8750074760293546 0.8789815883204921 0.9890330832826523 0.8445109629517971 1.1305730741827298 1.0 20.03785822398743 3.331472854588532 5.759432380611822 0.938158940160885 1.1833579886499968 0.34211032919680706 0.13754701536250294 0.20604634294944893 10.336546078840675 0.038378571305155644 0.05204527066719841 2145.2250251505507 -3.331472854588532 0.24519904848911178 IYHPNVDK ddPTM_BT-474_Trastuzumab_2h_R1 6 IYHPNVDK 8 0 P61088;F8VSD4;F8VV71;F8VQQ8;Q5JXB2 P61088 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like 0 ;;;;; 111.04 0.0033105 6729260000.0 11746200.0 12430600.0 11603600.0 10851700.0 9728650.0 12762600.0 13107400.0 10981200.0 17569600.0 13061700.0 False True 11682959.764325507 12844345.006543605 13237286.019700741 12225524.10735014 10967535.911273766 11880351.501928847 12473344.986869497 11800672.905403737 13239807.500578204 12228091.123316022 0.9554197500253264 1.0503965726958426 1.082530861620783 0.9997900722246839 0.8969131649960737 0.9715622317596146 1.0200565943678515 0.9650462027472709 1.0827370655860655 1.0 23.543695872503122 3.4903468894561267 24.898751323027998 0.9841629890281287 1.0331465929353292 0.09662894975858316 0.05307598580264701 1150.1881119556754 2165355.9819999463 0.014351256530255813 0.0211663907585788 3092.7647688346656 -3.4903468894561267 0.04898360390720047 IYHTIAYLTPLPQPNR ddPTM_BT-474_Trastuzumab_2h_R1 2 IYHTIAYLTPLPQPNR 16 0 P10620;F5H760 P10620 MGST1 Microsomal glutathione S-transferase 1 0 ; 187.16 1.3838e-09 1583610000.0 734960.0 1009380.0 1128740.0 852750.0 1080690.0 1161730.0 901240.0 710420.0 1119030.0 937830.0 False True 731003.0570217324 1042976.6031169045 1287656.7808160419 960708.0625655717 1218309.46574853 1081422.339518264 857643.5781288651 763435.1478396647 843260.050733768 877976.8864833423 0.8325994320302664 1.1879317316591942 1.466618086010938 1.094229332634942 1.3876327321421404 1.2317207390843787 0.9768407247758875 0.8695390044919471 0.9604581438486047 1.0 19.743823434476734 2.1838612763112613 4.920974184712402 0.9289731722216223 1.2157429215811766 0.35518664198447003 0.1628941610868423 0.20365498730685222 10.235330760807209 0.06239698085294644 0.046184849474003524 152.70781962770928 -2.1838612763112613 0.28676974935955424 IYIDSNNNPER ddPTM_BT-474_Trastuzumab_2h_R1 3 IYIDSNNNPER 11 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 183.72 1.2147e-05 4760810000.0 1036430.0 981460.0 825530.0 829870.0 876430.0 962850.0 987390.0 918730.0 1406010.0 916300.0 False True 1030849.9760381972 1014127.3027949003 941757.4483646083 934931.456911512 988038.165492402 896290.4458051022 939626.1735039046 987290.2978164122 1059517.6750687533 857820.9495161023 1.201707625139839 1.1822132618315868 1.097848506609514 1.089891145044788 1.151799995150218 1.0448456013002487 1.0953639847965344 1.1509281725671816 1.235126835811632 1.0 19.710317024024093 4.318974936348049 5.2279834878027 1.113535499442373 1.19607224152899 0.23297048339292248 0.0604073081514514 0.29589042336650767 13.70466991694511 0.014481910258737525 0.041234043107993265 20843.705881162652 -4.318974936348049 0.08253674208661699 IYITLTGVHQVPTENVQVHFTER ddPTM_BT-474_Trastuzumab_2h_R1 3 IYITLTGVHQVPTENVQVHFTER 23 0 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ;; 346.69 9.585299999999995e-102 9948229000.0 982882.0 1151887.0 1037794.0 1178160.0 1218213.0 1226959.0 1181100.0 1084868.0 1289358.0 1392617.0 False True 977590.2725204554 1190226.8624646037 1183906.3745328449 1327314.935200533 1373345.2046358457 1142142.2122808145 1123965.6807598434 1165826.3590080813 971612.9974120354 1303738.9907806022 0.7498358792929342 0.9129333945531275 0.9080854242335664 1.0180833315461515 1.0533896848582915 0.8760512804767517 0.8621094319553018 0.8942176058645397 0.7452511616840505 1.0 20.314223639508686 -0.5983956790957278 7.615296423996291 0.9999999893252631 0.8988089683793388 0.10538094485577965 0.09277173808608784 0.0 0.0 0.0915407890425668 0.021576370895722067 0.252118271455916 0.5983956790957278 -0.10119102094592436 IYKPLLFMDLLDER ddPTM_BT-474_Trastuzumab_2h_R1 2 IYKPLLFMDLLDER 14 1 A0A0J9YWM9;H3BSH7;Q969X6;A0A0J9YXV4;Q969X6-2 A0A0J9YWM9 CIRH1A Cirhin 0 ; 155.98 5.1958e-06 178296000.0 337810.0 457230.0 383290.0 408900.0 396770.0 399130.0 408030.0 417100.0 596890.0 449480.0 False True 335991.2684942194 472448.6241486279 437253.90038359637 460666.6980745383 447296.30765996187 371539.08255095873 388292.0300740321 448226.1199908843 449794.45741622546 420793.80158081144 0.7984700992077087 1.122755664113309 1.0391167805726906 1.0947563779312692 1.0629821684149992 0.8829480880069628 0.9227608121016071 1.0651918310274935 1.0689189235356276 1.0 18.682753927891916 4.754659896280655 24.242138478782568 1.0266240019315547 0.7984698329538635 0.4844495276478673 0.07125785351949708 1950.8298862202616 2937466.3636672823 0.018141666026294856 0.4608074973384373 56840.76263998148 -4.754659896280655 -0.22815416897769114 IYLLQYATLLVEHAPHHIHDNNK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYLLQYATLLVEHAPHHIHDNNK 23 0 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 0 ; 170.19 2.3426e-12 156027000.0 205974.0 205059.0 166779.0 189830.0 155488.0 181631.0 196511.0 51851.0 267600.0 108558.0 False True 204865.05886986284 211884.26485421695 190260.03353094484 213862.4585362917 175288.47515041978 169075.27648338443 187005.01218507986 55720.38491404304 201653.56565628824 101629.73549882032 2.0157984064835124 2.0848648657230484 1.8720902164815072 2.1043295791985424 1.724775473340226 1.6636398358563769 1.8400619785854953 0.5482685224019875 1.9841984697345687 1.0 16.632963051548863 1.8876180887585492 9.50798764291084 1.138914550700242 1.9034119607701543 0.4658363905088142 0.3548370857155894 0.2930377386047063 23.017896486702977 0.14179892935737556 0.08983028770888718 77.2001401498268 -1.8876180887585492 0.7644974100699122 IYLTADNLVLNLQDESFTRGS(ph)DSLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 IYLTADNLVLNLQDESFTRGSDSLIK 26 1 Q99623-2;Q99623 Q99623-2 PHB2 Prohibitin-2 1 IYLTADNLVLNLQDES(0.127)FT(0.127)RGS(0.745)DS(0.001)LIK 103.43 0.002188 26483000.0 17604.0 17001.0 17467.0 13807.0 17966.0 28793.0 16085.0 14854.0 30224.0 22006.0 True False 17509.22201998826 17566.868007678466 19926.201774114325 15554.964784336387 20253.863607175128 26802.60768143149 15306.907099332899 15962.48090708367 22775.70018085074 20601.558239715523 0.8498979454007571 0.8526960826590871 0.9672181852584698 0.7550382647439574 0.9831228964093545 1.3009990491768546 0.7429975403425728 0.77481910452343 1.1055328881358073 1.0 14.33046584218559 4.25707217175105 22.26655049173453 0.9326629196448907 0.851296649575957 0.04735997133082459 0.1631784774384759 285.2977463353326 343145.24742996943 0.04141055670790433 0.11270560638925085 18074.74470050372 -4.25707217175105 -0.08136627006893371 IYNDDKNTYIR ddPTM_BT-474_Trastuzumab_2h_R1 5 IYNDDKNTYIR 11 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;;; 194.96 2.5835000000000003e-07 3130390000.0 3030620.0 3144640.0 2996150.0 2897240.0 2917180.0 3341220.0 3538100.0 3129090.0 4767940.0 3595470.0 False True 3014303.478653537 3249307.4414249803 3417981.8769973465 3264030.2869392936 3288665.5815194906 3110249.3257858693 3366948.586145459 3362598.5849970705 3592945.0741227306 3366004.0263632685 0.8955139254275584 0.9653308243174116 1.0154420048897672 0.9697048076516562 0.977023662408587 0.9240183022437664 1.0002806175437677 0.9989882836326024 1.0674215021675586 1.0 21.682605471723125 1.733404873667161 2.1376003983625083 1.0309496659973927 0.9629312786190876 0.39801391572038225 0.035260680232170334 0.301719758205937 2.8381374215170783 0.023717033312044264 0.009981060325490792 54.1258679504027 -1.733404873667161 -0.06801838737830512 IYNISGNGS(ph)PLADSK ddPTM_BT-474_Trastuzumab_2h_R1 1 IYNISGNGSPLADSK 15 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 IYNIS(0.001)GNGS(0.999)PLADSK 174.15 9.747799999999998e-07 85292000.0 344410.0 333680.0 318730.0 316060.0 312400.0 432170.0 428650.0 393220.0 570880.0 435530.0 True False 342555.73482754844 344786.3370861806 363604.41354917624 356073.1635936384 352182.28826013085 402295.1051187532 407914.56189798197 422564.0731307017 430194.2734000823 407734.10252400726 0.8401449197087429 0.8456156474325806 0.8917684620892542 0.8732974784042571 0.863754800199462 0.98666043048255 1.00044259082784 1.0363716709367505 1.055085338059876 1.0 18.63726910206216 2.6140885041818676 2.0291544085289206 1.02849180589988 0.861008317184065 0.9314387026176174 0.020853257302615016 0.07798769611154452 0.6377793397430879 0.00822894829213902 0.007446999809671376 411.23351719043615 -2.6140885041818676 -0.16748348871581498 IYNSIYIGSQDALIAHYPR ddPTM_BT-474_Trastuzumab_2h_R1 1 IYNSIYIGSQDALIAHYPR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 200.39 6.4911e-16 25706000.0 22954.0 28168.0 25564.0 28501.0 31113.0 22528.0 26917.0 21162.0 29950.0 28579.0 False True 22830.41821442916 29105.554852084442 29163.18899372867 32109.22367772664 35075.05612880106 20970.692385207807 25614.921877074517 22741.21589845864 22569.223809438867 26755.063752287122 0.8533120468635598 1.0878521958145733 1.0900063353889669 1.2001176291341045 1.310968886246915 0.7838027440101 0.957385940629084 0.8499780119759436 0.8435496180609761 1.0 14.707524346163884 2.7220018057434867 24.99977411550688 0.8813984927011347 1.111374870332091 0.45430470643683907 0.1212866719176954 751.4445370019934 1134496.8294973704 0.03986577704055425 0.03768419254464189 527.23205358484 -2.7220018057434867 0.22997637763095624 IYPHGLVLLDLQSYDGDAQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYPHGLVLLDLQSYDGDAQGK 21 0 P52788;H7C2R7 P52788 SMS Spermine synthase 0 ; 234.28 9.0099e-30 1145000000.0 1003180.0 917540.0 798370.0 746620.0 783920.0 926660.0 920850.0 906580.0 1241090.0 999550.0 False True 997778.9903437755 948079.7642353567 910773.5564435596 841142.0154473266 883747.5653421311 862602.1753230062 876304.96751139 974233.6031199615 935239.9992539732 935757.8632421914 1.0662790338589245 1.0131678305651344 0.9733004575435072 0.8988885356869543 0.9444190640088705 0.9218219896483508 0.9364655130710733 1.0411171964341932 0.9994465833432339 1.0 19.835775740685587 -0.31558268051251215 6.8356625788341265 1.0000000027968479 0.9762168819604478 0.01748194100979228 0.05076070250188474 0.0 0.0 0.05313485827567077 0.012524006206554934 0.4835232029160137 0.31558268051251215 -0.023783120836400107 IYPHGLVLLDLQSYDGDAQGKEEIDSILNK ddPTM_BT-474_Trastuzumab_2h_R1 1 IYPHGLVLLDLQSYDGDAQGKEEIDSILNK 30 1 P52788;H7C2R7 P52788 SMS Spermine synthase 0 370.26 6.532299999999996e-137 525060000.0 473790.0 322290.0 326480.0 346550.0 360720.0 500380.0 472690.0 375940.0 718530.0 530110.0 False True 471239.16728301795 333017.2278215811 372445.546184969 390423.1944674276 406655.55384505197 465789.90836782125 449824.1788488449 403994.55178463896 541457.9093087183 496277.92594999506 0.9495469023349227 0.6710297001102885 0.7504777599608503 0.7867027204969149 0.8194109239628493 0.9385666458490726 0.9063957015371447 0.8140490049225874 1.0910376645752236 1.0 18.920788760563465 1.9219523144838708 0.5653939589500467 1.0147379418028248 0.7746486287657031 0.4345867055032637 0.09040187370102142 0.7871319076806332 0.5302714403680652 0.08563395349387466 0.05594454577088397 83.55112740912915 -1.9219523144838708 -0.24008931303712178 IYPSREEYEAHQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 IYPSREEYEAHQDR 14 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 0 111.3 0.00039634 239040000.0 77968.0 138330.0 120510.0 156420.0 135510.0 146150.0 134310.0 84265.0 153690.0 142580.0 False True 77548.22895105909 142934.23042774928 137476.76050830242 176222.755961896 152766.39526930306 136046.99450009415 127812.9121859745 90553.28218899987 115815.15884048927 133480.4223311207 0.5809708090276163 1.0708254284150887 1.0299395080371272 1.3202142522799767 1.144485405435265 1.0192280794752555 0.9575405138359019 0.6784012262440045 0.8676565208431108 1.0 17.0262686307539 1.9744379436140018 5.733795822011904 0.8127746481510364 1.0444144886573963 0.1400157740941944 0.18939034589499817 0.2752365153637101 28.551755046424713 0.08185110314246362 0.052337754053487937 94.28398793407507 -1.9744379436140018 0.23163984050635988 IYPTFLHLHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYPTFLHLHGK 11 0 Q08945;E9PMD4 Q08945 SSRP1 FACT complex subunit SSRP1 0 ; 229.53 1.426e-12 3025000000.0 2206700.0 2750200.0 2563100.0 2282780.0 1917680.0 2503200.0 2476300.0 645700.0 3675700.0 2005730.0 False True 2194819.3723874167 2841738.7444689902 2923962.2011354263 2571779.7139412905 2161885.181020125 2330159.6758989776 2356511.90861536 693885.4127981635 2769872.986856575 1877722.5942081553 1.1688730695137546 1.5133964693370296 1.5571853958377038 1.3696270800990296 1.1513336355905128 1.2409499055325672 1.2549840513630888 0.3695356358486906 1.4751236393492106 1.0 20.840552511164926 1.9723640809473457 24.60619891411235 0.8616909782327876 1.3371489467072484 0.2593131483386286 0.2811188911850083 608.6453569426394 541918.7743178359 0.112856045928645 0.07305482852654244 93.83483203578405 -1.9723640809473457 0.47545796847446076 IYQGEDLPHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 IYQGEDLPHPK 11 0 Q6DD88;F5H6I7 Q6DD88 ATL3 Atlastin-3 0 93.345 0.0044463 0.0 338050.0 396770.0 458250.0 376070.0 438040.0 539250.0 426440.0 383180.0 481070.0 465260.0 False True 336229.97636088607 409976.2495974702 522767.6168195968 423680.4234406742 493821.7975335075 501972.91675796005 405811.46804100246 411774.8373486148 362516.7445077382 435566.70847087377 0.771936812024213 0.9412478998607517 1.2002010407426584 0.9727107586529552 1.1337455042584579 1.1524593294106793 0.9316861462292841 0.9453772047781519 0.8322875404789566 1.0 18.732534163662798 4.640250213504944 3.893829983028562 1.0198268777275639 0.7688757028706303 0.3276047269736886 0.10747868838349271 0.2702589431308202 6.602809843563736 0.027197989119101713 0.15145766889257808 43676.73980105257 -4.640250213504944 -0.2509511748569335 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR 30 1 P61106 P61106 RAB14 Ras-related protein Rab-14 0 ; 265.23 8.391799999999997e-59 1607720000.0 513150.0 513590.0 591610.0 553370.0 610700.0 694550.0 582050.0 563330.0 670380.0 634130.0 False True 510387.25741632417 530684.5326782888 674903.545633697 623426.585261695 688469.0250975096 646537.3932948367 553894.0178530745 605368.5451317781 505173.8316317742 593659.2804939932 0.8597309503721107 0.8939210589560697 1.13685335647764 1.050142069274032 1.1597039711475978 1.0890714834893895 0.9330166916487359 1.0197238803847914 0.8509491020024333 1.0 19.179275635473246 -0.4256347948544401 6.078925821440617 1.0000073804955305 1.0071628991408361 0.0 0.10642495070049252 0.0 0.0 0.10560171334796091 0.02489056253775371 0.37528845563045915 0.4256347948544401 0.007155518645305614 IYQY(ph)IQSR ddPTM_BT-474_Trastuzumab_2h_R1 8 IYQYIQSR 8 0 A0A2R8Y6L5;A0A2R8Y6I6;Q13627-2;Q13627;Q13627-5;A0A2R8Y443;A0A2R8YDF3;Q13627-4;Q13627-3;Q9Y463-2;Q9Y463-3;Q9Y463 A0A2R8Y6L5 DYRK1A;DYRK1B Dual specificity tyrosine-phosphorylation-regulated kinase 1A;Dual specificity tyrosine-phosphorylation-regulated kinase 1B 1 IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR 205.7 0.00079736 22916780000.0 2721350.0 3229190.0 2957360.0 3119410.0 3084450.0 3151720.0 3115500.0 2936790.0 3240970.0 3096110.0 True False 2706698.5539704105 3336671.637063426 3373730.582166072 3514326.9861596907 3477236.4245325252 2933849.014750854 2964791.362634232 3155948.182517452 2442276.370273022 2898513.6090868684 0.9338229585967388 1.15116645531797 1.1639519550949817 1.2124583355904355 1.199661927972791 1.0121908710565335 1.0228661177713922 1.0888160651112777 0.8425961370740029 1.0 21.466881828687175 2.71809951435578 22.58435202458145 1.00865254951319 1.139486742527998 0.3517066754179081 0.09288099768126648 288.1247317822672 318021.95811416133 0.030391425491733768 0.02870170367273773 522.5159047193636 -2.71809951435578 0.13083419301480803 IYSFTDNAPS(ph)PSIGGSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 IYSFTDNAPSPSIGGSSR 18 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 IYSFTDNAPS(1)PSIGGSSR;IYSFTDNAPS(1)PSIGGSSR 224.86 4.585300000000001e-19 325580000.0 280404.0 291390.0 267375.0 248420.0 242832.0 285810.0 290520.0 244007.0 269040.0 272680.0 True False 278894.33601981343 301088.74000102526 305019.07593483845 279869.94652892376 273755.2158219718 266052.6274243714 276466.4377058249 262216.04138243996 202738.69695129961 255277.32894690687 1.09251509787545 1.1794574208493318 1.1948537584325671 1.0963368650223213 1.0723835796593908 1.0422101661824643 1.083004271653614 1.0271810758290103 0.7941899807070829 1.0 17.961705892839145 2.049138417547225 0.7693226702627207 0.923092288858306 1.1440671909555127 0.5795102766513099 0.06835935611531305 0.4758778121519293 0.5301156260519032 0.05908872601063483 0.0319817419287525 111.97947255359503 -2.049138417547225 0.22097490209720672 IYSHDGTDSPPDADEVVIVLNNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYSHDGTDSPPDADEVVIVLNNFK 24 0 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 ; 354.12 4.8395999999999975e-102 174496000.0 240870.0 293290.0 274460.0 255830.0 278770.0 300540.0 328260.0 306090.0 383620.0 324310.0 False True 239573.18268317278 303051.98035245127 313101.582350914 288218.0517691588 314269.70710075716 279764.37719506177 312380.8097250242 328931.99009352643 289081.991244639 303612.2581442398 0.7890761201392489 0.9981546272366831 1.0312547466451967 0.9492964926081229 1.0351021695291838 0.9214528389105805 1.0288807561143287 1.0833949594263674 0.9521420281631127 1.0 18.21187051422476 4.737749844254819 5.751165112279583 1.005953107617178 0.7823619483736357 0.6512265468560321 0.046147160666703234 0.08317273242500212 11.969450953989591 0.011291153389067783 0.07310820493327434 54670.09697520606 -4.737749844254819 -0.22359115924354223 IYVASVHQDLSDDDIK ddPTM_BT-474_Trastuzumab_2h_R1 6 IYVASVHQDLSDDDIK 16 0 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-2;Q9UHX1;A0A0J9YYL3;A0A0J9YXJ8;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18 A0A0J9YVP6;E9PN18 PUF60 Poly(U)-binding-splicing factor PUF60 0 ;;;;; 283.05 1.278e-35 3755060000.0 2991260.0 2877670.0 2779660.0 2767620.0 2835450.0 3514200.0 3376650.0 3452060.0 4265190.0 3504590.0 False True 2975155.3885202254 2973451.5063617495 3171011.9667621604 3118000.4082295275 3196527.7504711505 3271271.6255369885 3213308.5394443506 3709670.2464055 3214091.0751178763 3280924.065769549 0.9068040981382467 0.9062847681798814 0.9664996516822438 0.9503421431663621 0.9742766630356002 0.9970580116945509 0.9793913162969412 1.1306784832691297 0.9796298270511796 1.0 21.645670773602507 2.981238940122057 0.765014374272704 1.045484753654268 0.9139378357397164 0.47508325278254215 0.04302981946732444 0.5157096386848229 0.6720988736171574 0.027230725088055314 0.034962690906062056 957.7208451906661 -2.981238940122057 -0.13154691791455153 IYVDDGLISLQVK ddPTM_BT-474_Trastuzumab_2h_R1 2 IYVDDGLISLQVK 13 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ; 215.46 6.772199999999999e-11 586610000.0 2228600.0 2306300.0 2263200.0 2014140.0 1992030.0 2611300.0 2887600.0 2407700.0 3322700.0 2865100.0 False True 2216601.465220738 2383063.8013122077 2581838.8879129565 2269129.9174855705 2245703.2128131515 2430786.977339006 2747915.7562967795 2587374.800052868 2503865.1068989164 2682246.86506448 0.8263972619714302 0.8884580432737015 0.9625657211275706 0.8459810120538707 0.8372470267605908 0.9062502818063956 1.024482791680221 0.9646296296409946 0.9334953987684965 1.0 21.355010593521936 2.4136189292968617 6.2723658311511095 0.9774308261205863 0.8760991521508319 0.6014818389888319 0.04166644473742894 0.15234659688116858 11.344832210345666 0.015029182526882097 0.012559415015413602 259.1904103707287 -2.4136189292968617 -0.1013316739697544 IYVEIER ddPTM_BT-474_Trastuzumab_2h_R1 5 IYVEIER 7 0 O00232-2;O00232 O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 0 ;;;; 127.31 0.0089977 942833000.0 944514.0 1207200.0 1095380.0 1226070.0 1189710.0 1130160.0 1166970.0 1050180.0 1258900.0 1188100.0 False True 939428.8415693699 1247380.9222321897 1249599.9827863614 1381290.3362882105 1341212.516536364 1052034.69931048 1110519.2028416868 1128549.7643059855 948660.963395745 1112274.4408164148 0.8446016622298941 1.1214686559880007 1.1234637216595114 1.2418610781655082 1.2058287661019234 0.945840937006771 0.9984219380484554 1.0146324709912642 0.8529018815710836 1.0 20.0850813695751 2.7216698228414673 24.41184688743892 0.9705336430923883 1.1165813977566028 0.30947660090061824 0.10758346623260567 781.4541759980664 1129414.264868198 0.035747725563398544 0.03379399742447055 526.8291814493945 -2.7216698228414673 0.1460477546642145 IYVLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 IYVLLR 6 0 P84090 P84090 ERH Enhancer of rudimentary homolog 0 ; 150.22 0.024519 1355460000.0 941500.0 1212150.0 1155750.0 1079510.0 898730.0 1002770.0 1000650.0 914460.0 1397370.0 1032420.0 False True 936431.0686104828 1252495.679989852 1318469.5540409144 1216175.8553153465 1013177.9383099475 933450.8701666754 952244.7366457866 982701.6487337901 1053006.8872986846 966530.0717007682 0.9688586998257372 1.2958682990441057 1.3641267795432903 1.2582907567224324 1.048263233576473 0.9657753002181458 0.9852199786915639 1.0167315818788394 1.0894714175273887 1.0 19.882455094218024 3.1777659136895835 5.0429770646195005 1.0109593797069394 1.237423965042313 0.49558408231942397 0.10076346578210123 0.1586976514891452 8.019588451270527 0.029712372661273946 0.036383131100062555 1505.7952182948438 -3.1777659136895835 0.2264645853353735 KAAALEAMKDYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAAALEAMKDYTK 13 2 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 73.834 0.020108 410300000.0 168920.0 275780.0 269440.0 294570.0 299540.0 294730.0 312560.0 297640.0 360870.0 294610.0 False True 168010.5534887763 284959.17058746924 307374.8099855366 331862.5317970575 337684.64348732244 274356.0088197929 297440.2787048485 319851.40818529564 271938.42391025694 275807.7375716891 0.6091582309038965 1.033180479620886 1.1144531792029309 1.2032386571852371 1.2243479695690191 0.9947364466106796 1.0784334091698082 1.1596897570799967 0.9859709749425487 1.0 18.073303405544394 4.743408025719843 3.0471540922476454 1.106768280876771 0.5268125228525595 0.7614041902334545 0.08088669537112647 0.171951812900667 2.368111432264844 0.019735397786606983 0.24273890975127127 55387.02336509029 -4.743408025719843 -0.5799557580242114 KAAALEFLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAAALEFLNR 10 1 P31948;P31948-2;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 150.46 3.4537e-05 4116200000.0 3441000.0 4279600.0 4395000.0 3947400.0 2570900.0 3546400.0 4420900.0 3148200.0 6556200.0 4072500.0 False True 3422474.038331042 4422043.898927174 5013777.797975182 4447140.435263964 2898288.876081853 3301245.715327641 4207044.177521965 3383134.6702356823 4940512.358579071 3812589.563357333 0.8976770201608697 1.159853119629578 1.315058365097158 1.1664356630478343 0.7601890599337541 0.8658801742143449 1.1034610748441744 0.8873587397790921 1.2958416521049538 1.0 21.86233979832149 KAAEVLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAAEVLNK 8 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 100.25 0.010006 821010000.0 1077500.0 1034100.0 1012400.0 910920.0 963650.0 1189100.0 1192900.0 1039500.0 1571700.0 1178200.0 False True 1071698.859721503 1068519.3933733494 1154937.120061451 1026242.3786012691 1086365.1154989596 1106900.3158403146 1135194.8696794673 1117072.7684740457 1184375.5947010028 1103006.2672922306 0.9716162922196406 0.9687337461793912 1.0470811946487897 0.9304048481252885 0.9849129127487884 1.0035303956682344 1.0291826105995359 1.0127528751186037 1.073770503234334 1.0 20.07300955768387 2.4619001257367716 2.4353284917891913 1.0286619986872847 0.9809088375115885 0.3350041127002612 0.03209632303854778 0.3520798354292167 4.241719425560747 0.012157049021067989 0.010108606884871077 289.66773651318954 -2.4619001257367716 -0.04775316117569617 KAALLAQYADVT(ph)DEEDEADEKDDSGATTMNIGSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAALLAQYADVTDEEDEADEKDDSGATTMNIGSDK 35 2 Q96MW1 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 1 KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK;KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK 345.76 1.8178999999999997e-130 1976600000.0 988110.0 565960.0 542770.0 510980.0 496800.0 857930.0 840280.0 780130.0 1517150.0 841250.0 True False 982790.1255493423 584797.6364699553 619187.2981585871 575670.0156080406 560064.5352357005 798623.3184499881 799632.4462186793 838347.2620198731 1143268.7112684532 787560.7047696392 1.2478912667904216 0.7425429340599314 0.7862089797124894 0.7309531977937163 0.7111382422254281 1.0140466806093187 1.0153280139244265 1.0644858954270566 1.451657890426184 1.0 19.587031604406288 2.0196670239980996 1.4172353155508046 1.1979567776726947 0.8371775549715571 0.35972242597629966 0.18461234763788895 0.4312182065247758 1.6163662834610475 0.12360313899480423 0.05949838176456139 104.63260164439542 -2.0196670239980996 -0.3607792227011376 KAAS(ph)LTEDRDR ddPTM_BT-474_Trastuzumab_2h_R1 6 KAASLTEDRDR 11 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 KAAS(0.819)LT(0.181)EDRDR;KAAS(0.696)LT(0.304)EDRDR;KAAS(0.805)LT(0.195)EDRDR;KAAS(0.846)LT(0.154)EDRDR;KAAS(0.994)LT(0.006)EDRDR;KAAS(0.702)LT(0.298)EDRDR 147.12 2.7919e-05 18058400000.0 12029320.0 11204180.0 9175760.0 11210640.0 8799960.0 10430240.0 10031940.0 9636830.0 16038200.0 12503620.0 True False 11964555.477703108 11577104.358230153 10467627.250864347 12629905.87454719 9920582.744550627 9709222.05894398 9546656.736467618 10355979.189431192 12085800.510869512 11705628.266712349 1.0221198901153454 0.9890203323090583 0.8942388236120105 1.078960102505838 0.8475053639591554 0.8294490340646122 0.8155612427583863 0.8847008424896599 1.0324777308398108 1.0 23.48069903334285 3.21903373953644 24.999949218143136 0.8860738883764618 0.9883055103135314 0.24051972450968984 0.07892516736685404 313.15642497942616 400928.3250966575 0.022789244482119473 0.027274954682574397 1655.8986021776489 -3.21903373953644 0.10223162193706958 KAAS(ph)PS(ph)PQSVR ddPTM_BT-474_Trastuzumab_2h_R1 5 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KAAS(0.999)PS(0.976)PQS(0.025)VR;KAAS(1)PS(0.999)PQS(0.001)VR;KAAS(1)PS(0.998)PQS(0.002)VR;KAAS(1)PS(0.995)PQS(0.005)VR;KAAS(1)PS(0.992)PQS(0.008)VR 134.81 0.000466 9072905000.0 6934910.0 6448484.0 5291349.0 5883364.0 6005178.0 7799760.0 7871320.0 7150090.0 9743180.0 7737710.0 True False 6897573.215100927 6663117.891749098 6036324.945970009 6628197.279165104 6769901.822821366 7260580.949860115 7490554.180237558 7683666.023221347 7342103.840923157 7243882.723213177 0.9521928334092856 0.9198268589298104 0.8332996511147919 0.9150061551831733 0.9345681151252035 1.0023051486730215 1.0340523813608848 1.0607109911648451 1.0135591810998303 1.0 22.7883317589021 2.7484474463259705 1.968037738516779 1.0353096405613358 0.9012897758034112 0.7586899813244024 0.031780357429267325 0.15365988778474501 1.1761334622869664 0.01216099251808924 0.012070269060856216 560.3346075592445 -2.7484474463259705 -0.1340198647579246 KAAS(ph)PSPQS(ph)VR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KAAS(0.992)PS(0.008)PQS(1)VR 159.14 1.9387e-05 1912400000.0 1801100.0 1704300.0 1399800.0 1556600.0 1555100.0 2134500.0 2152600.0 1983900.0 2753800.0 2041900.0 True False 1791403.0777210225 1761026.595228896 1596879.6727202884 1753665.400398205 1753132.7672001582 1986947.0390725383 2048470.5142694414 2131948.692040077 2075162.8890294738 1911584.1938414609 0.937130095285562 0.9212393578595097 0.8353697827513671 0.917388523115005 0.9171098886715089 1.0394242877053876 1.0716088367276662 1.1152784684601196 1.085572320442392 1.0 20.86633731297703 2.6775871638009203 2.356413532164042 1.0815194538999293 0.899285966244858 0.8122265196873575 0.03770010006592136 0.11405147737679813 1.2483360257750595 0.013471460181004388 0.012874359075496432 475.97831123463703 -2.6775871638009203 -0.1822334876550713 KAAS(ph)PSPQSVR ddPTM_BT-474_Trastuzumab_2h_R1 8 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KAAS(0.739)PS(0.261)PQSVR;KAAS(0.929)PS(0.066)PQS(0.005)VR;KAAS(0.71)PS(0.29)PQSVR;KAAS(0.825)PS(0.175)PQSVR;KAAS(0.988)PS(0.012)PQSVR;KAAS(0.9)PS(0.1)PQSVR;KAAS(0.886)PS(0.114)PQSVR;KAAS(0.925)PS(0.075)PQSVR 172.57 8.085499999999999e-06 34914400000.0 5365880.0 5254950.0 4918900.0 4850740.0 4649260.0 5639640.0 5884710.0 5325400.0 7413030.0 5620310.0 True False 5336990.69828531 5429857.83406564 5611438.364154749 5464843.186642422 5241315.702677001 5249784.961084587 5600044.095524738 5722808.389833262 5586188.086012841 5261617.004010528 1.014325195888893 1.0319751190417081 1.0664855233434092 1.0386242827018748 0.9961416231325745 0.997751253480266 1.0643199782987345 1.0876520251229238 1.0616865655092185 1.0 22.327074807086 2.2060906084680303 24.679554165033114 1.0637333111835985 1.0258697983595975 0.16199667523381045 0.02880253065164946 226.266922890629 171977.82413732962 0.011088244593837435 0.008189869025602467 160.7276550100608 -2.2060906084680303 -0.03786351282400102 KAASLTEDRDR ddPTM_BT-474_Trastuzumab_2h_R1 4 KAASLTEDRDR 11 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 126.12 0.00017668 1066750000.0 1135870.0 1482750.0 1477270.0 1523280.0 1493420.0 1480060.0 1647970.0 1476940.0 2025460.0 1717540.0 False True 1129754.6021270202 1532102.4374086983 1685256.7753389748 1716127.0918145848 1683598.1848061588 1377746.9358864813 1568251.3952432466 1587156.762549358 1526312.522773491 1607925.1267400244 0.7026164236997358 0.9528443905313848 1.0480940606704343 1.0672929126332726 1.0470625508661322 0.8568476933249894 0.9753261325188605 0.987083749208663 0.9492435296835007 1.0 20.616768798107316 4.726753281889739 3.892793888884612 0.9903746165375855 0.6782694330794168 0.6954386974336344 0.05694059360305855 0.13465004345729842 4.1277517321801405 0.014594156629726811 0.11748981375166488 53303.199960810765 -4.726753281889739 -0.31210518345816873 KAASPS(ph)PQS(ph)VR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KAAS(0.24)PS(0.761)PQS(0.999)VR;KAAS(0.182)PS(0.904)PQS(0.914)VR 194.13 4.332e-07 1610300000.0 2440530.0 2350650.0 1845785.0 1958010.0 2151680.0 2636530.0 2758820.0 2562400.0 3345100.0 2647300.0 True False 2427390.4576483765 2428889.964252068 2105655.484149176 2205893.865240711 2425683.6939934627 2454272.8868240383 2625365.3368841517 2753619.2996035507 2520744.9270435334 2478347.0475324416 0.9794392839635595 0.9800443269922123 0.8496209141676366 0.8900665737823127 0.9787506138047078 0.9902862027606777 1.0593211065811337 1.111070906048119 1.017107321411384 1.0 21.24094679421049 2.600291462233368 1.862169882785189 1.0616832599888748 0.9264692105070584 0.5408592392107368 0.0479769248567189 0.24345527021358626 1.686502973243042 0.020326080993358087 0.01799824081329865 398.3744365550291 -2.600291462233368 -0.13521404948181637 KAAVGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAAVGVK 7 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 82.671 0.06575299999999999 0.0 767320.0 902910.0 900930.0 762960.0 618370.0 741260.0 935120.0 780530.0 1302800.0 985540.0 False True 763188.8343772673 932962.8135293795 1027773.1129760585 859550.6577719486 697115.7541338577 690018.4409383496 889884.6730946952 838777.1120510316 981742.3966256072 922641.9934367553 0.8271776483253923 1.0111861590584883 1.113945734409616 0.931618833617363 0.7555647359352966 0.7478723555255656 0.9644961744912107 0.9091035504753747 1.0640556181154388 1.0 19.8154114316401 -0.5812171446286658 6.552460476986037 0.9999999191121206 0.9237431496201663 0.03630672011388192 0.11575295087277425 0.0 0.0 0.11769712843773371 0.02774147921483519 0.26229067778622145 0.5812171446286658 -0.07625676949195426 KAAVLS(ph)DS(ph)EDEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAAVLSDSEDEEK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 KAAVLS(1)DS(1)EDEEK;KAAVLS(1)DS(1)EDEEK 139.9 0.00013682 415830000.0 819150.0 543430.0 416960.0 452780.0 456870.0 708700.0 659470.0 683470.0 1138810.0 691390.0 True False 814739.7874161208 561517.7390396278 475664.3437187101 510101.9015754212 515049.68641935353 659709.237100355 627568.9166799543 734474.0019903367 858165.5347721896 647264.898271241 1.2587424246119063 0.8675238538956268 0.7348835770163757 0.7880883127415622 0.7957324548187044 1.0192260369168036 0.9695704469006552 1.1347347955250155 1.3258335761204358 1.0 19.30399674184636 1.9607892486430731 1.6469153957602016 1.1756931830058874 0.8829874854476589 0.31866986998881053 0.15789544292615118 0.412203809460846 2.0813314057548924 0.10474793497346553 0.049687226214868305 91.36697546714343 -1.9607892486430731 -0.2927056975582285 KADEVLEILK ddPTM_BT-474_Trastuzumab_2h_R1 1 KADEVLEILK 10 1 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 93.345 0.011295 0.0 321830.0 309790.0 249440.0 210400.0 230120.0 329580.0 273250.0 252500.0 478680.0 341890.0 False True 320097.3030386743 320101.1728779907 284558.98382865323 237036.61842720173 259424.41797189924 306796.9103478688 260031.85358363143 271342.83216901985 360715.72798337846 320070.2874932444 1.000084405040035 1.0000964956322194 0.8890515457004403 0.7405767660711235 0.8105232760081638 0.9585298052832981 0.8124210954417936 0.8477601413556608 1.1269891085750718 1.0 18.28802923043389 1.2450049329627686 24.99920828390319 1.063494575062366 0.8770681229051734 0.41651068385683354 0.08556170240261057 134.195996964177 520597.01176685793 0.06397878582197881 0.022123273840027616 17.57943581564427 -1.2450049329627686 -0.18642645215719267 KADGPPGPHDGGDRPSAEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KADGPPGPHDGGDRPSAEAR 20 2 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 0 210.64 2.1052e-22 143360000.0 167350.0 191330.0 150250.0 161980.0 161200.0 183390.0 185910.0 178700.0 215020.0 193270.0 False True 166449.00619433308 197698.30338857262 171403.8940035885 182486.65139181624 181727.86449274336 170712.6809536248 176916.82305483244 192035.50142021358 162031.20212038528 180935.34313322848 0.9199363889440404 1.0926461351611167 0.9473212421377416 1.008573826604156 1.0043801357202573 0.9435010208476715 0.9777902978555324 1.0613487563831667 0.8955199095683397 1.0 17.46511471977956 1.2303460491551768 24.999504601490052 0.9477600186496463 0.9975507625131627 0.10022874918967939 0.055315790206938 420.25016425445375 1278903.261187178 0.04617283428677855 0.012316736363329866 16.99597365207789 -1.2303460491551768 0.04979074386351634 KADGYNQPDSK ddPTM_BT-474_Trastuzumab_2h_R1 4 KADGYNQPDSK 11 1 O60506-2;O60506;O43390;O43390-3;B4DT28;O43390-2;O43390-4 O60506-2;O43390;O43390-2 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 ;;; 176.25 1.4221e-05 5680290000.0 5829440.0 5371910.0 5307880.0 4642400.0 4783090.0 6147410.0 6453980.0 5949740.0 8244680.0 6301300.0 False True 5798054.942751669 5550710.776961827 6055183.367079985 5230127.364003998 5392188.159904442 5722454.016146587 6141776.330802152 6393739.810967549 6212889.087051893 5899145.639185651 0.9828635021718268 0.9409346906254845 1.0264509027981676 0.8865906495446334 0.9140625591757399 0.9700479300145817 1.0411298019165356 1.0838416614935742 1.0531845570623262 1.0 22.492074596449193 2.2542375569208257 3.6724021414817964 1.0565199938062584 0.9498245211791844 0.5478072962634208 0.0404354951897949 0.15496961349026533 4.489998161602414 0.015619260899538483 0.011969067028771657 179.5715605741246 -2.2542375569208257 -0.10669547262707402 KADIDLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KADIDLTK 8 1 P62269 P62269 RPS18 40S ribosomal protein S18 0 80.916 0.03882 2277500000.0 3079600.0 2722400.0 2402700.0 2008600.0 2218500.0 3035200.0 2807900.0 2836400.0 4322600.0 3303200.0 False True 3063019.775775723 2813013.438274447 2740979.2753572166 2262888.5540536013 2501012.824920291 2825383.7680922775 2672071.1497803438 3048066.5709473602 3257353.1498724716 3092386.947988201 0.9905033966620564 0.9096576481492703 0.8863636153749782 0.7317611256656473 0.8087645132984935 0.9136579010367294 0.8640804642894706 0.9856679070936857 1.0533459119634403 1.0 21.560289423197425 1.6409720858616612 3.219694789823769 1.0263300292038846 0.8671427266554482 0.49669037499371127 0.06554622040461254 0.17756301971751098 4.347766047157519 0.04397016987049712 0.01891653045188804 43.7493984469199 -1.6409720858616612 -0.15918730254843638 KADKVEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 KADKVEQR 8 2 Q99832-3;Q99832;Q99832-4 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;;;; 91.584 0.006965000000000001 3113850000.0 4491070.0 4201120.0 4001200.0 3647890.0 3984690.0 3635730.0 5101530.0 4724520.0 7479490.0 5507050.0 False True 4466890.57812478 4340951.739569333 4564534.180946149 4109712.499973409 4492116.652391997 3384400.542687835 4854749.50416287 5077087.673026456 5636269.909531212 5155585.3541772915 0.8664177336343585 0.8419900828626754 0.8853571160930842 0.7971379033892886 0.8713106938967228 0.6564532075772228 0.9416485560130102 0.9847742446767498 1.0932356895157305 1.0 22.297704806738366 1.8562312111360204 2.815343591696324 1.032095100473214 0.8246552227025484 0.638889588108271 0.0688595097884425 0.1627939136260145 2.3108153510469402 0.036868839901353916 0.018708472818815287 71.81765347167216 -1.8562312111360204 -0.20743987777066553 KADPDAAHRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KADPDAAHRPR 11 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 0 ; 79.82 0.014679 54000000.0 95942.0 106829.0 89422.0 93022.0 99290.0 112034.0 110541.0 108523.0 123797.0 109977.0 False True 95425.45893215835 110384.7386855057 102011.84033004254 104798.57566223948 111933.99296206268 104289.35327966863 105193.70952237229 116621.53732862794 93288.88814481147 102958.17370395322 0.9268371368605032 1.0721318639830082 0.9908085648776971 1.017875238964302 1.0871792781010141 1.0129293238975188 1.0217130484933343 1.1327079058721696 0.9060853042426249 1.0 16.651698842474634 4.751512967028942 23.78990440838867 1.0352183322778576 0.9268369987500258 0.1954264701070828 0.05868103681422119 1576.583115362423 2895646.0366000626 0.01340390347753237 0.23707967134850966 56430.3789899811 -4.751512967028942 -0.10838133352783186 KADS(ph)DSEDKGEESKPK ddPTM_BT-474_Trastuzumab_2h_R1 6 KADSDSEDKGEESKPK 16 3 P83916;J3KS05;K7ELA4;B5MD17;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 KADS(0.996)DS(0.004)EDKGEESKPK;KADS(0.987)DS(0.013)EDKGEESKPK;KADS(0.992)DS(0.008)EDKGEESKPK;KADS(0.971)DS(0.029)EDKGEESKPK;KADS(0.673)DS(0.327)EDKGEESKPK;KADS(0.996)DS(0.004)EDKGEESKPK 194.24 1.7480000000000003e-10 33022590000.0 15852230.0 6786870.0 4687060.0 4848340.0 4710910.0 9304090.0 9998720.0 9986800.0 25218800.0 7792780.0 True False 15766883.355028315 7012766.865200455 5346957.30734415 5462139.346888495 5310816.4647488175 8660920.15777202 9515043.714780353 10732065.727942856 19003964.654606897 7295438.108665388 2.1611976032393034 0.9612536986463937 0.7329179177043709 0.7487061456118262 0.7279640215768162 1.1871693007010418 1.3042456906705244 1.4710652832755178 2.604910681379688 1.0 22.79856318738787 1.6890665713985087 2.46239918718015 1.8347888280918814 1.0521901385222505 0.1984987105745496 0.5403533281486476 0.3438036467707667 4.575106656339343 0.348205381908359 0.14615882618728848 48.872726880093545 -1.6890665713985087 -0.7825986895696309 KADYQAVDDEIEANLEEFDISEDDIDDGFRR ddPTM_BT-474_Trastuzumab_2h_R1 4 KADYQAVDDEIEANLEEFDISEDDIDDGFRR 31 2 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 ;;; 367.9 3.315099999999998e-137 487303000.0 117834.0 134158.0 126600.0 122935.0 122836.0 144256.0 150733.0 133126.0 189197.0 153912.0 False True 117199.59483658812 138623.36792977658 144424.1795730736 138498.5583951906 138478.43649398652 134283.92226209765 143441.46893402224 143060.53812013078 142571.93445991326 144089.20438930747 0.8133822053728075 0.9620663013395298 1.0023247764132355 0.9612001050473442 0.9610604561313179 0.9319499183247801 0.9955046218900956 0.9928609067311012 0.9894699263846667 1.0 17.136602722805474 4.733661388082099 4.186219773226355 0.9780197897582097 0.8008548982698237 0.8464072225037462 0.021061628261052574 0.07957795279695554 3.152452245572805 0.005340439276666642 0.042066104089596094 54157.84663542423 -4.733661388082099 -0.177164891488386 KAEAAASALADADADLEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KAEAAASALADADADLEER 19 1 O43633;M0R1T5 O43633 CHMP2A Charged multivesicular body protein 2a 0 ;; 222.72 3.7979e-19 1166100000.0 1205520.0 1351010.0 1232230.0 1182320.0 1215460.0 1487390.0 1364630.0 1346200.0 1855570.0 1522540.0 False True 1199029.6142658622 1395977.5511472104 1405717.2732648377 1332001.5907739976 1370241.6264041548 1384570.2302394456 1298617.6335071577 1446660.2798650905 1398289.6368641222 1425370.1936879258 0.8412057580378874 0.9793789412246187 0.9862120587969928 0.9344951905635466 0.9613233337361052 0.9713758828203664 0.911073936622166 1.014936531065014 0.981001036121194 1.0 20.442905230522392 4.741128975595056 24.941482644782887 0.9699043965048965 0.8412057109383426 0.6490357230346806 0.02864108267984795 142.7638889597052 1386307.512509159 0.0067633166261441705 0.04635315602611745 55097.12980700684 -4.741128975595056 -0.12869868556655384 KAEAFQLYQEAAQLDMLLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEAFQLYQEAAQLDMLLEK 20 1 O75955;A0A140T9R1;O75955-2;A0A140T9W4;A0A140T974 O75955 FLOT1 Flotillin-1 0 181.29 8.2609e-17 95097000.0 156500.0 149130.0 125240.0 117410.0 145660.0 181220.0 173350.0 177730.0 240070.0 176680.0 False True 155657.42138878477 154093.70189901142 142872.70339440557 132274.09396168162 164208.93760553977 168692.68794599432 164964.39823869165 190993.11509465319 180907.96527318837 165404.13113664178 0.9410733596502183 0.9316194271575555 0.8637795344807755 0.7997024805408811 0.9927741010887168 1.019881950872411 0.9973414636325687 1.1547058334164104 1.0937330526753213 1.0 17.335635742174038 2.672142785132899 1.4861947935982214 1.0839518696632515 0.8890392018982464 0.6250014438651792 0.05993086390352511 0.24613121858306738 1.0974385554599257 0.026958714873735586 0.024421089679666535 470.0486234013856 -2.672142785132899 -0.19491266776500515 KAEAGAGS(ph)ATEFQFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEAGAGSATEFQFR 15 1 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 KAEAGAGS(0.999)AT(0.001)EFQFR 112.58 0.00076622 0.0 55127.0 62306.0 60218.0 67105.0 54064.0 58821.0 66984.0 52825.0 88496.0 77536.0 True False 54830.20235718552 64379.81754522761 68696.1709757609 75600.48611956938 60948.729937566284 54754.84271974031 63743.72801627072 56767.06973991485 66687.34658564616 72587.58609809064 0.7553661074097597 0.8869260021710664 0.9463900739573967 1.0415070976104273 0.8396577598710021 0.754327918354356 0.8781629400119623 0.7820492840635743 0.9187155844461993 1.0 16.14743521969787 KAEAGAGSATEFQFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEAGAGSATEFQFR 15 1 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 0 103.66 0.0023331 411630000.0 271960.0 323620.0 267340.0 316270.0 304620.0 335790.0 357380.0 301230.0 439590.0 345970.0 False True 270495.7975775966 334391.49606757914 304979.1482390641 356309.7495721065 343411.55137580325 312577.6276646369 340092.16407582175 323709.3122149459 331258.9347042145 323889.89840018126 0.8351473723437534 1.032423356576631 0.9416136463207875 1.1000952834035873 1.0602724971419208 0.9650737155082016 1.0500239919666214 0.9994424457628122 1.0227516706770783 1.0 18.305143947956687 5.3977278716758255 1.6352864350232328 1.021825402071231 4.19426892678688e-18 0.5948454962354592 0.044793820136637255 5.35006239562464 2.838227470437406 0.01120993319699957 14.774310402480106 249877.9139484289 -5.3977278716758255 -1.021825402071231 KAEDDIDSSILETLVASCCNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEDDIDSSILETLVASCCNLR 22 1 Q96ME1-4;Q96ME1-2;Q96ME1;H0Y6I6 Q96ME1-4 FBXL18 F-box/LRR-repeat protein 18 0 109.08 0.00064357 30152000.0 50331.0 46624.0 46064.0 42036.0 41714.0 58777.0 57049.0 58631.0 66741.0 61879.0 False True 50060.02348829983 48175.85165519683 52549.410804534455 47357.75328995181 47026.03064175126 54713.884336175455 54289.32192165634 63006.34294218543 50293.57483358126 57929.82924272281 0.8641493362348968 0.8316242648211969 0.9071217970340514 0.8175020349451648 0.8117757510507199 0.9444855103391947 0.9371566018982562 1.0876321191659708 0.8681809611910634 1.0 15.822018791995038 2.463392447932532 2.4497415350395744 0.9921946557843344 0.8479735867997815 0.5086167518466486 0.058520348176260575 0.21224895344349812 2.5869817283674807 0.022164238137527263 0.01846422825376383 290.66480453485326 -2.463392447932532 -0.1442210689845529 KAEDLFQDAYYQSPETR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEDLFQDAYYQSPETR 17 1 O95671;O95671-2;O95671-3 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 0 92.993 0.005085899999999999 203460000.0 140260.0 151730.0 144090.0 141200.0 126670.0 179260.0 163960.0 161080.0 190100.0 202290.0 False True 139504.85574435093 156780.24132727817 164376.61954726814 159075.90552243774 142800.6736680882 166868.17813265056 156028.62841197543 173100.6075476665 143252.40220949342 189379.67901081752 0.7366411035915965 0.827862007931288 0.8679739051510317 0.8399840276070549 0.7540443326019752 0.88113032509216 0.8238931929072651 0.9140400303338715 0.7564296389018101 1.0 17.53092200818312 -4.999999999999907 0.18611125305078724 1.7052253515411189 0.7974941813442105 0.4649229756030876 0.056195339307202975 118.97781477705658 1.157719312441024 31.15076512958989 0.1543885039803916 1.0000000000002147e-05 4.999999999999907 -0.9077311701969084 KAEDS(ph)DS(ph)EPEPEDNVR ddPTM_BT-474_Trastuzumab_2h_R1 5 KAEDSDSEPEPEDNVR 16 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 2 KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR 204.78 1.625e-11 8772950000.0 3520090.0 2770670.0 2419490.0 2420160.0 2473320.0 3662320.0 3484680.0 3440540.0 4804900.0 3472880.0 True False 3501138.226558767 2862890.076044616 2760133.161415918 2726552.007855403 2788282.6414838256 3409152.438573964 3316112.715629679 3697290.565508121 3620796.7773613576 3251237.8251178446 1.0768631563985525 0.8805538782573825 0.848948403617897 0.8386196748792365 0.8576064845034095 1.0485706127789638 1.0199539049437218 1.1371947437816576 1.1136671545183312 1.0 21.632557661054918 2.636951616440205 4.1829476102953445 1.0782400421262743 0.8932844763391603 0.5463749143015939 0.0739772232185409 0.1694459343773173 5.160002002407326 0.02533740722898865 0.0238322781471669 433.4625848170344 -2.636951616440205 -0.18495556578711403 KAEDS(ph)DSEPEPEDNVR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEDSDSEPEPEDNVR 16 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 1 KAEDS(0.991)DS(0.009)EPEPEDNVR 177.32 1.8177e-09 1209800000.0 764790.0 754300.0 698480.0 615540.0 652240.0 736800.0 822680.0 694880.0 1003300.0 850200.0 True False 760672.4556161573 779406.419516022 796819.912703005 693467.3008872615 735298.8978706393 685866.7502406391 782883.825457208 746735.4741291427 756050.1585312195 795939.50810716 0.9556912904413151 0.9792282096531988 1.0011061199838398 0.871256287473919 0.9238125389946639 0.8617071313267421 0.9835971420981476 0.9381811890516273 0.949883943227291 1.0 19.602299263660424 -0.43176030598778725 11.372240621250043 1.0000000000000064 0.9403152924989071 0.14601142745420204 0.04316980793405679 0.0 0.0 0.04226997791044959 0.009963129340361495 0.3700323501551916 0.43176030598778725 -0.05968470750109933 KAEEDAALQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEEDAALQAK 11 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 0 97.551 0.0099123 128390000.0 236640.0 219860.0 208400.0 160380.0 168540.0 255320.0 218720.0 245790.0 377060.0 236890.0 False True 235365.95653317586 227177.90719182356 237740.9085547279 180684.0915558683 190002.56998515505 237670.3293586318 208139.67800846082 264132.09789633064 284138.61534514214 221771.47738826755 1.0612994930863346 1.0243783820499635 1.072008498813857 0.8147309729985461 0.8567493539870642 1.0716902469046066 0.9385322245207358 1.1910102282174908 1.2812225390359149 1.0 17.758714303071898 1.7136204174565224 6.689310698911398 1.175823818403533 0.975370544826866 0.37344756475361085 0.1059497264656904 0.12695522363309894 13.912594585544104 0.05357560777945268 0.027712013055892225 51.7154630300424 -1.7136204174565224 -0.20045327357666698 KAEEIANEMIEAAK ddPTM_BT-474_Trastuzumab_2h_R1 4 KAEEIANEMIEAAK 14 1 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;; 213.34 1.8892e-09 3140210000.0 5626900.0 4516210.0 4269860.0 3932250.0 4208350.0 5709100.0 5265980.0 5553020.0 8267500.0 5770700.0 False True 5596605.395607366 4666529.319743408 4871019.173711562 4430072.44681732 4744258.427655311 5314443.354775837 5011244.429402863 5967414.5500642015 6230085.40382424 5402408.985455167 1.0359462622461633 0.8637867537069189 0.901638359262644 0.8200179695288425 0.8781746144040954 0.9837173322278712 0.9275944199882995 1.1045840043081137 1.1532050647400847 1.0 22.365171431487433 1.7789470504665856 3.9382887972976093 1.098083601477878 0.908661725332684 0.5681086182711427 0.06756391265925205 0.14119298595527438 4.24735683173551 0.035005518375486384 0.018119530287272635 60.11004463644121 -1.7789470504665856 -0.18942187614519412 KAEEKDS(ph)LSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KAEEKDSLSR 10 2 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 KAEEKDS(0.991)LS(0.009)R;KAEEKDS(0.508)LS(0.492)R;KAEEKDS(0.799)LS(0.201)R 108.71 0.0014398 1293880000.0 1044700.0 679540.0 624460.0 532620.0 599320.0 978620.0 857960.0 812970.0 1349480.0 831580.0 True False 1039075.4512770807 702158.0781093952 712378.5400963787 600049.6373892415 675639.8495520528 910970.3028236903 816457.1970745197 873637.9495780122 1016918.736105561 778507.8524485427 1.3347013109874326 0.9019280613560747 0.91505633225898 0.7707688952680194 0.8678651697950738 1.1701491513008253 1.0487462579942124 1.1221954240156586 1.306240820702289 1.0 19.57035206561195 2.7322902836398497 24.777458152720104 1.1289223883731125 0.9421506991258698 0.2257343444148242 0.15734482613286585 658.0522614656455 2600311.498556268 0.05066284783003306 0.04887978531627022 539.8713534594119 -2.7322902836398497 -0.18677168924724274 KAEEKDSLS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 KAEEKDSLSR 10 2 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 KAEEKDS(0.108)LS(0.892)R;KAEEKDS(0.387)LS(0.613)R 116.63 0.00083806 721950000.0 1145110.0 729900.0 687760.0 550500.0 650380.0 1049690.0 987650.0 874960.0 1468050.0 957060.0 True False 1138944.8549936826 754194.2802661319 784590.6298829153 620193.2435559635 733202.0378957225 977127.4010044736 939873.596310608 940253.9581568553 1106268.7483621603 895979.6114197094 1.2711727370547938 0.8417538419999157 0.8756791113133763 0.6921957103167189 0.818324466930603 1.0905687903502435 1.0489899371943823 1.0494144578435125 1.2347030381743183 1.0 19.773106377659037 2.728034146255125 24.187115851433738 1.0815583352314135 0.8837225710463538 0.2719951931034522 0.15006110178020174 598.5668109595202 1375349.0009760293 0.048749246700541544 0.04644078096851842 534.6063909892637 -2.728034146255125 -0.19783576418505977 KAEELLQELR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEELLQELR 10 1 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;E9PIK8;E9PJA0 E9PP16 PPFIBP2 Liprin-beta-2 0 105.03 0.0041737 276620000.0 253780.0 243020.0 256230.0 232040.0 218090.0 270020.0 265710.0 209200.0 366690.0 282080.0 False True 252413.67667760857 251108.7737913075 292304.95680891525 261416.24020840274 245862.46877929525 251354.15295870992 252856.59218922874 224811.5662960755 276324.16289426124 264077.4128991618 0.9558321323527694 0.9508907673493212 1.1068911710390474 0.9899227553710728 0.9310242253591678 0.951819961424303 0.9575093508121509 0.8513093332291921 1.0463756057765374 1.0 18.010601384454066 3.34255046698697 5.426138517445941 0.9424665655989486 1.0065981924909593 0.08704422673679235 0.062184159254590844 0.361502813159047 16.08752335545225 0.017563548296088596 0.023864192025378473 2200.647419983045 -3.34255046698697 0.06413162689201068 KAEFER ddPTM_BT-474_Trastuzumab_2h_R1 2 KAEFER 6 1 Q9NWB6;Q9NWB6-2;Q9NWB6-3 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 0 ; 100.19 0.060841999999999986 805700000.0 1090280.0 1190850.0 1026760.0 969890.0 995800.0 1129980.0 1167600.0 1083260.0 1488270.0 1211460.0 False True 1084410.0536214963 1230486.722365973 1171318.8832420926 1092677.974554937 1122609.2274309807 1051867.142286805 1111118.7273348514 1164098.3618828235 1121505.8002962805 1134143.5856169122 0.9561488222248653 1.0849479183860617 1.0327782990589847 0.9634388347402942 0.9898298960270913 0.9274550027231752 0.9796984627219519 1.0264118023906272 0.9888569794152144 1.0 20.113171870225145 3.7535948736411506 23.826202496899786 0.9838436556772793 1.0306573149916465 0.2036892399421648 0.037750161635616584 644.4879023619142 1021374.5420340125 0.009793085098258667 0.017557452369505414 5670.154251404409 -3.7535948736411506 0.046813659314367206 KAEGAPNQGR ddPTM_BT-474_Trastuzumab_2h_R1 6 KAEGAPNQGR 10 1 Q9P2E9;A0A087WVV2;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ;;;;; 134.3 0.00027931 518672000.0 479021.0 616726.0 564188.0 503112.0 538148.0 580307.0 679514.0 529209.0 684611.0 588161.0 False True 476442.0041602366 637253.3520912608 643620.766389993 566805.9276147642 606677.9579469038 540191.7429857414 646643.3118244383 568701.2628488517 515897.7923674039 550624.0614300346 0.8652763973351645 1.157329286403213 1.1688932821396059 1.029388229316938 1.1018006666314049 0.9810536458991652 1.174382590809836 1.0328303877092995 0.9369328885257167 1.0 19.070708129316376 1.4550531178109587 8.13472556043982 0.9731872911201528 1.07423609948068 0.1561626152339045 0.09113118868601162 0.2472296701720005 48.078258725415985 0.04995240472718363 0.021706951200440153 28.51366991969071 -1.4550531178109587 0.10104880836052732 KAEGAQNQGK ddPTM_BT-474_Trastuzumab_2h_R1 5 KAEGAQNQGK 10 1 Q9P2E9;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ;;;; 136.5 0.00018604 1530616000.0 1791092.0 1553007.0 1506312.0 1289114.0 1443733.0 1567869.0 1807036.0 1624181.0 2215380.0 1931775.0 False True 1781448.9596810283 1604697.899182442 1718387.6365013844 1452315.700224164 1627583.8398740818 1459485.9063966367 1719622.7651321187 1745385.6336440055 1669429.283571105 1808487.4656242132 0.9850491051460772 0.8873149135311084 0.9501794561281462 0.8030554415387591 0.899969654648565 0.8070201945761809 0.9508624183571976 0.9651079517112231 0.9231080199911083 1.0 20.786352168233286 2.0364753570495897 24.999903560461696 0.9586427203523209 0.8873403094620758 0.28660997634516294 0.054977692435664305 216.26814407411499 148227.4581786486 0.020119727510915474 0.014859362753469081 108.76154218725789 -2.0364753570495897 -0.07130241089024514 KAEGEPQEES(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 12 KAEGEPQEESPLK 13 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK 272.96 4.2035e-32 55952930000.0 34873960.0 21533530.0 20194180.0 16824870.0 18002310.0 28868320.0 28099300.0 27896750.0 44749060.0 26168770.0 True False 34686202.47422123 22250260.528756227 23037345.013040856 18954896.81690723 20294797.47044891 26872720.987115704 26740029.50924991 29978547.14182619 33721253.76968306 24498656.69438884 1.4158409951581443 0.9082236959487013 0.9403513547874368 0.7737116795162344 0.8284045008515598 1.0969058966106748 1.091489620954378 1.2236812620298672 1.3764531741614454 1.0 24.546199310032275 2.203133985935836 2.007386866673007 1.2142883406302332 0.9607371323134138 0.19772321781556956 0.18620132519668003 0.4629116277203457 3.733583412163943 0.09270933495547341 0.05867799187704457 159.63715742819468 -2.203133985935836 -0.2535512083168193 KAEGEPQEES(ph)PLKSK ddPTM_BT-474_Trastuzumab_2h_R1 8 KAEGEPQEESPLKSK 15 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 KAEGEPQEES(1)PLKSK;KAEGEPQEES(1)PLKSK;KAEGEPQEES(1)PLKSK;KAEGEPQEES(0.99)PLKS(0.01)K;KAEGEPQEES(0.997)PLKS(0.003)K;KAEGEPQEES(1)PLKSK;KAEGEPQEES(1)PLKSK;KAEGEPQEES(0.993)PLKS(0.007)K 243.41 2.9433e-18 29495840000.0 15081070.0 10077920.0 9338800.0 8850000.0 9396590.0 14953260.0 14847610.0 14530740.0 29919600.0 14649790.0 True False 14999875.194784377 10413357.474968703 10653621.865695255 9970409.092589056 10593190.038547572 13919576.332387816 14129374.38092174 15615097.604402656 22546315.48209971 13714827.859883767 1.0936976641653233 0.7592773005505996 0.7767958865059751 0.7269802577510116 0.7723895732977395 1.0149289859556272 1.0302261556085974 1.1385558582238737 1.6439371833494372 1.0 23.70923317868715 1.9872042292264118 1.3979686291277469 1.3017439090944345 0.8233445432575995 0.5043209587195906 0.18328107371472 0.32207614415007324 1.170764272950063 0.12392926261672847 0.05795122056371951 97.096646190342 -1.9872042292264118 -0.47839936583683496 KAEGGGGGGRPGAPAAGDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEGGGGGGRPGAPAAGDGK 20 2 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 91.733 0.00098574 1086300000.0 291320.0 319820.0 310300.0 286190.0 286540.0 321260.0 338350.0 294100.0 317220.0 299970.0 False True 289751.5654886947 330465.0153647272 353987.5428240496 322421.6246562783 323029.1705443595 299052.0523646956 321982.7178774815 316047.2354095398 239045.38153022344 280825.6577827625 1.031784516330901 1.1767621875219254 1.2605242185451684 1.1481202508415136 1.1502836781183443 1.064902882186187 1.1465573353221048 1.1254215085076862 0.8512234366958774 1.0 18.099315228686446 1.2919613529639697 8.012460304965028 0.9263588573890706 1.1418291617577068 0.616942017626438 0.06691630475123377 0.13569247553551117 17.863130237894865 0.045233240280166225 0.016318198022758353 19.586703674174434 -1.2919613529639697 0.21547030436863612 KAEGSPS(ph)EGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAEGSPSEGKK 11 2 Q9P2E9;A0A087WVV2;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 KAEGS(0.14)PS(0.86)EGKK 90.444 0.005991300000000001 835370000.0 1606000.0 961110.0 955440.0 768400.0 848950.0 1083700.0 1522800.0 1416900.0 2684500.0 1630200.0 True False 1597353.4744433737 993099.9653467353 1089957.6471666447 865679.3612141722 957058.7503791222 1008786.3697554036 1449136.3463390826 1522636.2728724158 2022940.945457048 1526159.2403155637 1.0466492828841958 0.6507184434708085 0.7141834340571658 0.5672274152959136 0.6271028114872412 0.6609967971276818 0.9495315482540635 0.997691612152858 1.3255110554772547 1.0 20.54147407096438 1.8836649473141753 1.8651649931595995 1.1424783257857674 0.6991345332963524 0.590490689199476 0.149031943268458 0.22364586136038975 1.455836749544098 0.09476683772068906 0.043646139913521766 76.50061866171522 -1.8836649473141753 -0.4433437924894149 KAELEENQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAELEENQR 9 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 0 ; 122.69 0.00092792 334260000.0 429040.0 479310.0 436860.0 429720.0 406540.0 460440.0 480740.0 425040.0 548990.0 479050.0 False True 426730.0963108257 495263.5436009864 498366.0907448092 484122.50793981564 458310.4592486349 428610.8665591751 457484.76959485887 456758.6431093878 413698.7705891093 448476.6188646613 0.9515102423647237 1.1043241113767943 1.1112420799248026 1.0794821570974948 1.021927208622087 0.9557039286556849 1.020086110069689 1.0184670145473642 0.9224533747966757 1.0 18.77467324725741 3.054082374126608 4.464842964679966 0.9900712239357642 1.0676587356195237 0.35050220018809397 0.04948217238309223 0.23500166826847427 9.851240366658601 0.014703625244024764 0.01750943460897338 1132.6151698742653 -3.054082374126608 0.07758751168375955 KAELLDNEKPAAVVAPITTGYTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAELLDNEKPAAVVAPITTGYTVK 24 2 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ; 176.84 2.4675e-17 3817800000.0 3626400.0 2851700.0 2706200.0 2468600.0 2502300.0 3799600.0 3730200.0 3621500.0 5506900.0 4099200.0 False True 3606875.865330916 2946617.1106109503 3087209.4372879257 2781124.506888742 2820953.072705906 3536942.5952963275 3549755.9752522 3891754.7196043865 4149798.283679422 3837585.546498316 0.9398815535518379 0.767830990321415 0.8044666105501971 0.7247068431937462 0.7350853911986256 0.9216583063597589 0.9249972234472397 1.0141154307701357 1.0813565543746617 1.0 21.871767480362895 2.2116286428115015 1.5247856430377682 1.0332210640720227 0.7921596287650968 0.7117609151237345 0.06406181861611912 0.21131608635565188 0.9615578535700542 0.03729828386553961 0.021776925090088255 162.79034471730586 -2.2116286428115015 -0.24106143530692592 KAEPSEVDMNS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 KAEPSEVDMNSPK 13 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK 140.81 2.4218e-05 1156090000.0 1328480.0 872580.0 749480.0 705750.0 680750.0 1284560.0 1239440.0 1152580.0 2243380.0 1472040.0 True False 1321327.611288005 901623.2978142503 855000.2694030589 795097.877637822 767439.47737863 1195761.3907289838 1179483.552079402 1238591.3722826515 1690529.0587518853 1378093.1469231506 0.9588086365846277 0.6542542496690388 0.6204226987936237 0.5769551059832392 0.5568850546075796 0.8676927197546432 0.8558808631425375 0.8987718827628141 1.2267161058933542 1.0 20.394241974102563 1.8814810489029603 1.1885122984505088 1.0873155823864944 0.6747737296670258 0.58764322248501 0.13198162265612834 0.3282707810328229 0.8565971569469485 0.10593475505164833 0.04529729740266111 76.11689235229827 -1.8814810489029603 -0.41254185271946864 KAEQGS(ph)EEEGEGEEEEEEGGESK ddPTM_BT-474_Trastuzumab_2h_R1 7 KAEQGSEEEGEGEEEEEEGGESK 23 1 Q5STZ8;Q8NE71 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK 291.12 9.792699999999996e-62 12591000000.0 10284770.0 6499320.0 6205010.0 5248314.0 5911283.0 9815270.0 9150050.0 9489930.0 14533970.0 9442940.0 True False 10229397.941065362 6715645.937278086 7078621.4730862295 5912750.014278238 6664049.851130633 9136763.487560306 8707427.12491457 10198116.765488125 10952267.838720193 8840283.484692328 1.1571346053300666 0.7596640932280934 0.8007233574967862 0.6688416751020085 0.7538276190656079 1.0335373863724344 0.98497148196573 1.153596124281195 1.2389045959538445 1.0 23.075661203126653 2.377451405642611 1.812580581177128 1.1274582238058695 0.8172287640572408 0.44706723287895955 0.13996696664700703 0.3012105215783464 2.0168543022568395 0.06483775507689477 0.047108128368583094 238.47969393033782 -2.377451405642611 -0.3102294597486287 KAERS(ph)PNQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAERSPNQGK 10 2 Q9P2E9;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 KAERS(1)PNQGK 94.688 0.0041396 137240000.0 163550.0 159420.0 145950.0 188920.0 159770.0 127030.0 242910.0 168410.0 323920.0 265070.0 True False 162669.4649721133 164726.19832857506 166498.49137985837 212837.252629596 180115.76246901776 118248.71509645549 231159.51529368703 180977.6093686523 244094.25630562365 248153.0056621555 0.6555208329556862 0.6638089991657778 0.6709509358372852 0.85768557209966 0.7258254317267222 0.47651534496198517 0.9315201106546175 0.7292984781133047 0.9836441660430356 1.0 17.920870403291573 1.3600811253439564 1.2230511633623289 1.0104940638810134 0.6950580615592604 0.4793770418899047 0.11550366804783128 0.3647810906014476 1.0625630454485635 0.10289128519777893 0.033940501676428515 22.912956222517973 -1.3600811253439564 -0.31543600232175295 KAES(ph)EELEVQKPQVK ddPTM_BT-474_Trastuzumab_2h_R1 3 KAESEELEVQKPQVK 15 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 KAES(1)EELEVQKPQVK;KAES(1)EELEVQKPQVK;KAES(1)EELEVQKPQVK 176.1 4.268600000000001e-07 2751880000.0 2558050.0 1578990.0 1282320.0 1264260.0 1364370.0 2072820.0 1821830.0 1843080.0 3315220.0 1866550.0 True False 2544277.7430260708 1631545.727630388 1462859.5098747523 1424315.186372502 1538114.432245437 1929530.8322934317 1733701.1228335504 1980619.988570606 2498228.452672048 1747425.1809661458 1.456015267915132 0.9336855994763172 0.8371514419094853 0.8150936600244039 0.8802176190427898 1.1042137044325986 0.9921461254638626 1.1334505248891558 1.4296626143906117 1.0 20.736799254761845 1.5948090171113711 3.799561304315686 1.2325360549435929 0.9857499038155071 0.15436318010798844 0.19870624597871803 0.28140615323352813 9.375806153876521 0.12018152577333742 0.051798778101200406 39.33770481447637 -1.5948090171113711 -0.24678615112808577 KAESGWFHVEEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAESGWFHVEEDR 13 1 O43719;Q5H919;Q5H918 O43719 HTATSF1 HIV Tat-specific factor 1 0 142.25 2.6124e-05 101110000.0 140510.0 129060.0 104960.0 109060.0 94965.0 118370.0 101620.0 99927.0 138730.0 128710.0 False True 139753.5097721287 133355.68408158253 119737.4556713255 122866.98481782617 107058.229848346 110187.3605130082 96704.2523739017 107384.06015902455 104541.85038675975 120495.61760582493 1.1598223449860372 1.1067264248383415 0.9937079708825628 1.0196801116847143 0.8884823529314037 0.91445118671006 0.8025541035878045 0.8911864372554031 0.8675987763201941 1.0 16.878621151403955 4.032445230758684 0.822660805585341 0.8780021092727768 1.1968379786664332 0.7498632475888738 0.053121037870034145 0.47087318049151894 0.4651591762639394 0.0197042392046619 0.11437980226863749 10775.693519505276 -4.032445230758684 0.3188358693936564 KAEVEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 KAEVEGK 7 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;; 109.71 0.01117 17762100000.0 17435800.0 14066300.0 13017000.0 10879250.0 11553500.0 10258400.0 16236200.0 15992800.0 24284600.0 17581300.0 False True 17341927.590099514 14534488.29224207 14849680.45420774 12256561.934525367 13024769.742040392 9549260.953676134 15450792.97769281 17186263.945792895 18299985.72696822 16459246.381891798 1.0536282881808505 0.8830591604870004 0.9022090142927275 0.7446611861895355 0.7913345143414365 0.5801760744150521 0.9387302807916849 1.044170768638651 1.1118361863214816 1.0 23.972394944928684 2.0025145774093245 24.99881560101587 1.0405452988281714 0.8210572865436001 0.43102713885141053 0.11661995014287183 76.76469136679795 763153.4968358846 0.04639455621004324 0.03405738804437505 100.58068230707782 -2.0025145774093245 -0.21948801228457127 KAFEEAEK ddPTM_BT-474_Trastuzumab_2h_R1 7 KAFEEAEK 8 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;; 123.88 0.0021302 24585470000.0 31686810.0 24986420.0 23881300.0 21339210.0 19534110.0 26989160.0 29327850.0 27296490.0 46881780.0 29486630.0 False True 31516211.73569557 25818077.885090128 27243579.460019246 24040751.798041508 22021663.12075894 25123462.894848894 27909149.85223316 29333492.692567643 35328393.50266693 27604768.028625995 1.1416944965092055 0.9352760312391294 0.9869157180298636 0.8708912812855872 0.7977485301786487 0.9101131684495953 1.0110264220764877 1.0626241329812651 1.279793167109087 1.0 24.718414141981235 1.7265251846661174 2.375641834155991 1.1421099055457966 0.9354837294082712 0.34907313875819945 0.10593941224677846 0.2738931621757892 3.2462118557170196 0.06897583631814437 0.029770081731074958 53.275211763554694 -1.7265251846661174 -0.20662617613752543 KAGEIWK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAGEIWK 7 1 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 ; 78.516 0.056317999999999986 2274900000.0 2133520.0 2041240.0 1827930.0 1529980.0 1460290.0 2073390.0 2172110.0 1892950.0 2675200.0 1880730.0 False True 2122033.365376357 2109181.4394443636 2085286.6553476169 1723675.311127617 1646249.2756830538 1930061.4295350704 2067036.7410340065 2034211.5412053359 2015932.805843435 1760700.2012260386 1.2052212886093323 1.197921961941996 1.1843507792499581 0.9789714966394393 0.9349969259597468 1.0961897023644909 1.173985633439841 1.1553423687853512 1.144960853891917 1.0 20.747717848155226 7.999999991188062 0.010244191754471131 5.736190519544718e-10 2.3734780835770244 0.1270017552963808 0.08849389352241818 36859.89733398557 29.183473433573013 2901.7901537957932 3932.2099137953096 99999997.97097635 -7.999999991188062 2.3734780830034055 KAGEQQETASR ddPTM_BT-474_Trastuzumab_2h_R1 6 KAGEQQETASR 11 1 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ;;;;; 179.19 1.1567e-05 575254000.0 518404.0 536970.0 507169.0 475310.0 474932.0 517669.0 565783.0 493506.0 636184.0 577422.0 False True 515612.97046409943 554842.7218447808 578573.9868080267 535484.1972653676 535411.7750574917 481883.76049175026 538413.9147890501 530333.9236926907 479404.9776288499 540570.4336041545 0.9538312464230503 1.0264022731422222 1.0703026855362592 0.9905909831122739 0.9904570094367382 0.8914356585854658 0.9960106608111616 0.981063503893075 0.8868501638768974 1.0 19.04412308053962 3.176405370318063 2.830583504819352 0.9557207641627611 1.0175812555001311 0.2633224523731087 0.04572006863384545 0.35315209127386765 5.759336078912363 0.013804793546794364 0.017664860260362323 1501.08529429741 -3.176405370318063 0.06186049133737004 KAGNFYVPAEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAGNFYVPAEPK 12 1 P18124;A8MUD9;C9JZ88;C9JIJ5 P18124 RPL7 60S ribosomal protein L7 0 ; 131.69 0.00031141 3325200000.0 6773800.0 6305300.0 6017200.0 5495200.0 5697700.0 7218100.0 7121800.0 7030000.0 10206600.0 7448900.0 False True 6737330.613439938 6515168.098865657 6864369.457560019 6190891.756564448 6423268.322086255 6719129.736579743 6777291.326082005 7554614.297616682 7691320.191433012 6973504.82467586 0.9661326381534554 0.9342745524189829 0.9843499976181755 0.8877733524551208 0.9210961322285769 0.9635226339564567 0.9718630009547637 1.0833310490995227 1.1029346626702186 1.0 22.733452494042815 1.8689568718688285 3.2641538554456666 1.0702842251676212 0.94187645479842 0.6899390545222244 0.035559707364766935 0.1277037817508274 2.336112212599755 0.018163398822345984 0.00965709257874236 73.9531831321614 -1.8689568718688285 -0.12840777036920126 KAGTQIENIDEDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAGTQIENIDEDFR 14 1 O43707;F5GXS2;O43707-3;K7EP19 O43707 ACTN4 Alpha-actinin-4 0 ; 123.76 0.000162 1416060000.0 1469850.0 1428690.0 1352870.0 1099400.0 1160540.0 1412640.0 1394150.0 1199360.0 1525640.0 1299920.0 False True 1461936.4909156887 1476243.082988659 1543342.3366431594 1238583.9272759792 1308327.8899405 1314987.521796875 1326709.6383298074 1288862.333426678 1149666.464528625 1216957.9926824975 1.2013039888855932 1.2130600167509713 1.2681968859428125 1.0177704856893313 1.0750805679468025 1.0805529276308827 1.0901852375408525 1.0590853104022797 0.944705134804576 1.0 20.2148479388593 3.8976046623336185 0.430890376899508 1.0050467110122412 1.3138750213503099 0.6523644536030776 0.0573867018428197 1.7479626079332469 0.4283541574437554 0.049886650337124604 0.2602775571912376 7899.5920183402195 -3.8976046623336185 0.3088283103380687 KAGTQIENIDEDFRDGLK ddPTM_BT-474_Trastuzumab_2h_R1 4 KAGTQIENIDEDFRDGLK 18 2 O43707;F5GXS2;O43707-3;K7EP19 O43707 ACTN4 Alpha-actinin-4 0 ;;; 187.47 2.4053e-14 2309450000.0 2479640.0 2111230.0 1914750.0 1755780.0 1780050.0 2663760.0 2540770.0 2360900.0 3586020.0 2648120.0 False True 2466289.8937539035 2181501.014284515 2184330.156694649 1978061.567975823 2006728.8163170454 2479620.5410165633 2417863.2484160434 2537082.3464072845 2702293.4212061437 2479114.714430404 0.9948268546825002 0.8799516220796308 0.8810928126803184 0.7978902938464056 0.809453796000766 1.00020403516756 0.9752930085655864 1.0233823919641407 1.0900235497279185 1.0 21.24139359916382 2.636706149399224 5.849716217985474 1.0179092789182715 0.869704511588298 0.6212879017602755 0.05672918995650498 0.16415185311920397 7.855286463817396 0.019571455017799215 0.018413343001445755 433.2176571957027 -2.636706149399224 -0.14820476732997356 KAGTQIENIEEDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 KAGTQIENIEEDFR 14 1 P12814-3;P12814;P12814-2;P12814-4;P35609-2;P35609;G3V2N5;A0A494C1A0;Q08043;A0A494C166;A0A494C033;A0A087WSZ2;G3V5M4;A0A494C0Q3;G3V380 P12814-3 ACTN1;ACTN2;ACTN3 Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 ;; 166.9 5.985e-06 1432380000.0 1273240.0 1241810.0 1160760.0 1071740.0 1123850.0 1407120.0 1329680.0 1153390.0 1531730.0 1369920.0 False True 1266385.0173102613 1283142.895160004 1324184.9184932138 1207422.1741120229 1266965.6359191681 1309849.1064041923 1265358.2985291255 1239461.8185957458 1154255.6656304433 1282490.5327524818 0.987442000520928 1.0005086684001652 1.032510482281103 0.941466734667158 0.9878947279244283 1.0213323786437578 0.9866414341581243 0.9664490980183786 0.9000110614096927 1.0 20.290516745330805 1.6127286703204793 3.6364103159703673 0.9459166906923192 0.9945317507137645 0.2360448780549712 0.03206206289446902 0.229123023001925 7.094220521026797 0.018751705269932355 0.008115063504200264 40.99479040441146 -1.6127286703204793 0.04861506002144533 KAGTQIENIEEDFRDGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAGTQIENIEEDFRDGLK 18 2 P12814-3;P12814;P12814-2;P12814-4;G3V2N5;G3V5M4;G3V380 P12814-3 ACTN1 Alpha-actinin-1 0 ; 163.45 1.861e-11 579800000.0 409940.0 400680.0 346130.0 349350.0 350030.0 504460.0 474560.0 424430.0 708270.0 483980.0 False True 407732.9285886153 414016.39158382517 394862.09538410685 393577.6741803372 394604.24570964614 469587.86757110927 451603.7198047514 456103.12181186996 533726.3488317621 453091.9820438754 0.8998899666009369 0.9137579299377973 0.8714832992693969 0.8686485079804942 0.8709142102440348 1.0364073657909851 0.9967153198509263 1.0066457582286306 1.177964673804531 1.0 18.789444435453888 2.7352115166535462 24.814382071368346 1.0369381586517668 0.8848873012611048 0.710908660600019 0.050483562435346505 150.86665832414548 1117806.7231817509 0.01611213320535665 0.015760621531174412 543.5149779091728 -2.7352115166535462 -0.15205085739066193 KAHEILPNLVCCSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAHEILPNLVCCSAK 15 1 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 104.41 0.00090598 392640000.0 653590.0 634320.0 581980.0 517960.0 569530.0 683550.0 701440.0 627250.0 934160.0 752870.0 False True 650071.1440606756 655432.9577454627 663917.7253391567 583533.6828923649 642056.2696312165 636297.7974036221 667508.6674389854 674058.5801109619 703948.7851026837 704821.1920355643 0.9223206558009878 0.9299279947195321 0.941966179282612 0.8279173349017585 0.9109491554544791 0.9027790375683189 0.9470610063684122 0.9563540196120406 0.9987622294239464 1.0 19.42689777722093 1.6768982889486863 1.3190109381775657 1.0008745884356884 0.9052722430918877 0.6014953999083227 0.02974097716971708 0.2967459783140181 0.9857041197023579 0.025745226578595536 0.00961247736064292 47.52239162517141 -1.6768982889486863 -0.09560234534380074 KAHS(ph)NMLTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAHSNMLTVK 10 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 KAHS(1)NMLTVK 68.893 0.025098 291400000.0 217250.0 265640.0 251910.0 285800.0 258220.0 312720.0 296960.0 277890.0 369210.0 333980.0 True False 216080.35013874387 274481.6668172293 287376.7383590283 321982.2506962659 291102.7864101502 291102.40246369824 282594.9103026358 298627.5628968277 278223.1426605313 312665.11046533607 0.6910919795852944 0.8778775041728232 0.9191199425203811 1.0297991042782586 0.9310369998651435 0.9310357718853047 0.9038261732562769 0.9551035689667566 0.8898439043820873 1.0 18.254258715871458 4.759330165346066 1.9821357458956703 0.9441172822148274 0.6075179224568492 0.7870625978230107 0.039901215268254416 0.3448420061273983 1.3874332939773644 0.009996822240208227 0.21520744551532775 57455.309089828945 -4.759330165346066 -0.33659935975797817 KAIVER ddPTM_BT-474_Trastuzumab_2h_R1 4 KAIVER 6 1 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 ;;; 91.906 0.07593899999999999 2155860000.0 4126420.0 4172430.0 3308140.0 3481420.0 3341440.0 3873540.0 3166830.0 3431210.0 5157540.0 4358110.0 False True 4104203.813208359 4311306.8102628 3773897.35713165 3922167.415041965 3766952.5777334576 3605771.297132361 3013638.3344345926 3687264.3135313457 3886533.374495272 4079971.688634313 1.005939287432202 1.056700178158815 0.9249812609348975 0.9613222135751707 0.9232790973101992 0.8837736073456233 0.7386419721562691 0.903747524475 0.9525883195028271 1.0 21.960127710538448 3.784554342220625 1.0629477064338193 0.8825084967900624 1.0344278886345444 0.3015889810303072 0.0686430346603778 0.6592612828231252 1.3604576184612993 0.024147374616757936 0.07883105647511694 6089.117326506378 -3.784554342220625 0.151919391844482 KALDSNSLENDDLSAPGREPGHFNPESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KALDSNSLENDDLSAPGREPGHFNPESR 28 2 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2;Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 251.19 6.243600000000001e-47 240920000.0 153880.0 211590.0 209240.0 206390.0 206890.0 248250.0 253750.0 196210.0 306730.0 248230.0 False True 153051.52717767537 218632.64524114397 238699.17325331687 232518.95283835666 233236.21516689638 231089.06181764204 241475.1430808655 210852.18653419183 231140.50147142514 232387.7488796048 0.6586041128053103 0.9408096868067384 1.0271590236754773 1.0005645906868346 1.0036510801080618 0.9944115510898314 1.0391044461038637 0.9073291838780619 0.9946329037817487 1.0 17.826174488547064 4.729559122566827 3.388793427896951 0.990810976854828 0.6187876822102315 0.9009762042417653 0.03332799105441582 0.08834459509653188 1.7221729948401898 0.008638675009915359 0.08416045483255018 53648.690097458835 -4.729559122566827 -0.3720232946445965 KALERPYTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KALERPYTSK 10 2 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ; 130.1 0.00016065 2778400000.0 1823760.0 1769470.0 1731160.0 1633850.0 1428370.0 1695680.0 1885340.0 1771950.0 2267300.0 1765890.0 False True 1813941.078798784 1828365.7392827992 1974892.2804875344 1840695.2424775844 1610264.4528877188 1578461.6328013667 1794138.9015017892 1904181.9067797842 1708554.2952634625 1653189.388345508 1.097237310852905 1.105962663547342 1.1945953043310924 1.1134206736711092 0.9740350768276175 0.9547978253000233 1.0852591446267037 1.1518232092485585 1.0334897545969388 1.0 20.656820577666295 3.456679321060969 24.680807626179913 1.0478297798639606 1.133947048834717 0.37142984555740344 0.05883745338806034 275.933856527246 333150.6878799601 0.018864405918370904 0.02554519969218148 2862.0638685876747 -3.456679321060969 0.08611726897075633 KALQDLGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KALQDLGLR 9 1 O95865;A0A140T971;Q5SSV3;Q5SRR8;H0Y7N1 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 74.84100000000002 0.064057 345660000.0 615400.0 706100.0 699850.0 676470.0 565040.0 707660.0 734440.0 595690.0 993210.0 757350.0 False True 612086.7547773679 729602.1116535368 798382.7967947504 762111.0326399681 636994.4947455319 658741.1298524576 698912.3313667431 640143.412652529 748446.7038321465 709015.2746000439 0.8632913516886453 1.029035815998613 1.1260445654645717 1.0748866208416674 0.8984213987559874 0.9290930018736958 0.9857507396593115 0.9028626541418793 1.0556143578914374 1.0 19.43545718279351 3.2437118458855876 24.996951198931963 0.9536410094641309 1.031061098217905 0.12455514348468588 0.07674786509805523 221.92670130916053 1076917.3475702414 0.0217718915283976 0.02860849866797036 1752.7171892079373 -3.2437118458855876 0.07742008875377404 KALVVPEPEPDSDS(ph)NQER ddPTM_BT-474_Trastuzumab_2h_R1 6 KALVVPEPEPDSDSNQER 18 1 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 1 KALVVPEPEPDS(0.115)DS(0.885)NQER;KALVVPEPEPDS(0.002)DS(0.998)NQER;KALVVPEPEPDS(0.016)DS(0.984)NQER;KALVVPEPEPDS(0.004)DS(0.996)NQER;KALVVPEPEPDS(0.002)DS(0.998)NQER;KALVVPEPEPDS(0.01)DS(0.99)NQER 201.13 8.798400000000003e-16 4045320000.0 2519780.0 3153350.0 3021160.0 3212450.0 3395590.0 3531780.0 3436950.0 3033560.0 3732740.0 3557000.0 True False 2506213.7844538754 3258307.3485096707 3446513.067606526 3619145.840620085 3827998.259261257 3287636.3615158577 3270691.5980759864 3259939.651305556 2812856.2431534156 3329989.214699087 0.7526191896931859 0.9784738443376928 1.0349922613542064 1.0868341028387167 1.1495527500100844 0.9872813842770789 0.9821928502466759 0.9789640269450959 0.8447043103734491 1.0 21.66708607397046 -0.49322475425774515 6.852037275594244 0.9999943540118458 0.98735255639589 0.0 0.1068171917510396 0.0 0.0 0.10463480166181545 0.024662659267726386 0.32119978487958245 0.49322475425774515 -0.012641797615955741 KAMEAVAAQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAMEAVAAQGK 11 1 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 79.46600000000002 0.043401 330720000.0 1123900.0 960270.0 946210.0 820580.0 775080.0 1214500.0 1225100.0 1001500.0 1545900.0 1167500.0 False True 1117849.0472770298 992232.0064545273 1079428.1433952444 924465.3438640377 873781.8437409151 1130544.4736254846 1165837.2326635206 1076237.0155139563 1164933.6589987164 1092989.1504529624 1.0227448706272746 0.90781505566027 0.9875927340613601 0.8458138339990985 0.7994423763299002 1.0343601975892975 1.0666503251019173 0.9846731004309937 1.0658236255281568 1.0 20.059847649505635 2.6808945198194625 24.99681614784916 1.028676758886678 0.9128580955677591 0.45956280577274355 0.06376263201040153 260.7664555772649 113035.36182046686 0.021178853159070362 0.019967619540985193 479.6169465204994 -2.6808945198194625 -0.11581866331891899 KAPAGPSLEETSVS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAPAGPSLEETSVSSPK 17 1 K7EIX2;Q6AI08;A0A087WXZ7 K7EIX2 HEATR6 HEAT repeat-containing protein 6 1 KAPAGPSLEETS(0.001)VS(0.626)S(0.372)PK;KAPAGPSLEETS(0.001)VS(0.679)S(0.32)PK 176.46 6.7529e-10 1785960000.0 1755070.0 1372130.0 1303440.0 1023990.0 1196870.0 1729820.0 1742560.0 1503910.0 2586800.0 1711230.0 True False 1745620.8981266082 1417800.5175798985 1486953.022296421 1153627.0290079403 1349284.3000957177 1610241.6149582844 1658265.7155743586 1616139.400900244 1949317.801344123 1602017.836342287 1.0896388657645626 0.8850091961628892 0.9281750730637426 0.7201087296517817 0.8422404978813417 1.0051333876748676 1.0351106448106073 1.0088148610069156 1.216789075079706 1.0 20.61145877965464 2.55074216172199 3.6672735972122963 1.0564722081913547 0.8855589252147991 0.3868096054889576 0.1023221214577412 0.26204904480487134 6.791903510909713 0.036072673827685385 0.03283804790092471 355.42024484718837 -2.55074216172199 -0.1709132829765556 KAPAGPSLEETSVSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 KAPAGPSLEETSVSSPK 17 1 K7EIX2;Q6AI08;A0A087WXZ7 K7EIX2 HEATR6 HEAT repeat-containing protein 6 1 KAPAGPSLEETSVS(0.04)S(0.96)PK;KAPAGPSLEETSVS(0.043)S(0.957)PK;KAPAGPSLEETS(0.001)VS(0.073)S(0.926)PK;KAPAGPSLEETSVS(0.001)S(0.999)PK 225.5 1.4565999999999996e-15 12836460000.0 9958820.0 7051380.0 6417880.0 6244520.0 6039810.0 9054880.0 8953710.0 8545260.0 13193800.0 8979030.0 True False 9905202.819648918 7286080.92065077 7321461.718787015 7035075.5917349355 6808944.002741423 8428937.458494792 8520584.840806216 9182950.693151047 9942364.77786224 8405980.618065657 1.1783518508668955 0.8667734618602305 0.8709824649193391 0.8369131349905269 0.8100118608539291 1.0027310127720015 1.013633652984431 1.0924306289043269 1.1827727459298054 1.0 23.00298469935049 2.20981151721124 1.9381023799015658 1.096045043535132 0.9056387605780265 0.3332026359032597 0.10613158300141903 0.3597232306073783 2.70146102994858 0.05341675213294609 0.033632300045718176 162.1106388287313 -2.20981151721124 -0.1904062829571056 KAPAGQEEPGT(ph)PPSSPLSAEQLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 KAPAGQEEPGT(0.995)PPS(0.004)S(0.001)PLSAEQLDR;KAPAGQEEPGT(0.994)PPS(0.006)SPLSAEQLDR 208.3 3.8409e-25 760840000.0 808260.0 697920.0 642440.0 584050.0 616290.0 856810.0 799020.0 687990.0 1060120.0 894890.0 True False 803908.4179661286 721149.8452984503 732889.9678114161 657990.670116004 694770.8784629826 797580.741413793 760368.3500471858 739331.3073424323 798867.6308802118 837777.3540461244 0.95957286752092 0.8607893753818833 0.8748027913047007 0.7854004013574445 0.8293025290162374 0.9520199341290402 0.9076019378835146 0.8824913967556682 0.9535560098658739 1.0 19.676207361688615 2.7373644556485286 24.99648843169605 0.9252577356417164 0.8583664697945141 0.34825676932484484 0.05092309953334997 145.65327522829 3043727.228712054 0.016525187717339913 0.016394399882380745 546.2160479350117 -2.7373644556485286 -0.06689126584720229 KAPAPFRPASER ddPTM_BT-474_Trastuzumab_2h_R1 2 KAPAPFRPASER 12 2 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 131.69 0.00010924 1851260000.0 804350.0 1018450.0 984550.0 917900.0 925750.0 1064840.0 1050890.0 967330.0 1357730.0 1046350.0 False True 800019.4689716853 1052348.4925839729 1123166.0821379898 1034106.0458855919 1043638.7751498603 991230.1171637392 1000054.4359103481 1039517.0766022099 1023135.6341498978 979571.0471746958 0.8167038738834944 1.0742952189319843 1.146589709217575 1.0556723260331013 1.0654038603529068 1.011902219877436 1.0209105697792222 1.0611962037877825 1.0444731263759297 1.0 19.901790607756045 4.741236104752159 24.815265797221585 1.0560368906886026 0.8167037786634382 0.7692573378688516 0.03886290625393457 105.89428520477455 982113.1939076084 0.009628219136745936 0.06602256050762771 55110.72251282883 -4.741236104752159 -0.23933311202516439 KAPGFGGFGSSAVSGGSTAAMITETIIETDKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAPGFGGFGSSAVSGGSTAAMITETIIETDKPK 33 2 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 0 196.06 4.2742e-27 356930000.0 511110.0 391810.0 384250.0 313890.0 352390.0 464750.0 493480.0 479950.0 750790.0 513650.0 False True 508358.2405496598 404851.15899585333 438349.0600391272 353628.4418161329 397264.77772083005 432622.9264038229 469608.4871233318 515766.30613671744 565767.8645705706 480868.417242111 1.057167038470127 0.8419167166722369 0.9115779791760042 0.7353954411152055 0.8261402984193333 0.8996700779082417 0.9765841762215173 1.0725726365951702 1.176554425876786 1.0 18.87528264959106 1.9828248685860208 2.028569296224084 1.095384892230427 0.8676856293882288 0.5311152263463198 0.08610722463968488 0.24193292418129128 1.8493763059196289 0.05009884636943805 0.025721407940034274 96.1224581616135 -1.9828248685860208 -0.2276992628421982 KAPKS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAPKSPAK 8 2 P10412 P10412 HIST1H1E Histone H1.4 1 KAPKS(1)PAK 51.066 0.079098 1740300000.0 1813500.0 937470.0 1112500.0 694700.0 280540.0 634950.0 1212100.0 787340.0 3851800.0 1385000.0 True False 1803736.3174987936 968673.1222374181 1269130.3299766525 782648.9487708037 316265.10610914533 591057.4010115283 1153466.0923283428 846095.3088315112 2902575.5014756825 1296608.1142418452 1.3911191035183958 0.7470824157257586 0.9788079497857689 0.6036125643316952 0.2439172658533549 0.4558489141934241 0.8896027100700349 0.6525451287386408 2.2385911900396223 1.0 20.306311075845162 1.263256810694484 24.993149019394878 1.6192958973196574 0.7259403858171349 0.42844756257722993 0.40327889552673424 168.17738897794214 170200.1411194302 0.2587482473237907 0.09439707170119191 18.333982424829507 -1.263256810694484 -0.8933555115025225 KAPPDGWELIEPTLDELDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAPPDGWELIEPTLDELDQK 20 1 P41223;C9JCD9;P41223-2;F8WCN7 P41223 BUD31 Protein BUD31 homolog 0 ; 117.38 0.00012999 107128000.0 329310.0 315600.0 267100.0 260430.0 253510.0 347850.0 330330.0 345850.0 525520.0 349330.0 False True 327537.03154978045 326104.5552157713 304705.3583251814 293400.4112975106 285792.9958285071 323803.94825082325 314350.67591685633 371659.083190715 396012.63760722213 327035.46032354044 1.0015336906454848 0.9971535040669652 0.9317196307205722 0.8971516758679495 0.8738899309138171 0.9901187716172424 0.9612128165119009 1.136448881791069 1.210916508000208 1.0 18.31908754948517 1.758840998236328 4.67064579513812 1.130785321373681 0.9468861015675699 0.5916581220914564 0.06256500037236813 0.1189286381980452 5.669344955899458 0.031948660558648756 0.01664730293509142 57.390630797930655 -1.758840998236328 -0.18389921980611101 KAPPLVENEEAEPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAPPLVENEEAEPGR 15 1 O14908;K7ELJ2 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 203.53 8.5938e-09 442370000.0 166780.0 198950.0 170100.0 165900.0 180580.0 182120.0 196210.0 182680.0 238530.0 186030.0 False True 165882.07501099998 205571.93048218518 194048.60146429564 186902.9229898897 203575.79261848406 169530.47306436658 186718.57270501132 196312.50923024412 179747.47763824556 174157.40613170422 0.9524836106341287 1.180380065644318 1.1142138929053007 1.0731838923263868 1.1689183775769638 0.973432464515241 1.0721253655087621 1.1272130975686754 1.0320978110015828 1.0 17.410032300001646 2.7530757018431036 24.99592951824291 1.0578237155019354 1.1019620676002326 0.11606488058841058 0.07078230392641975 2170.5180035906387 3737778.0330091137 0.021198901530559887 0.022391062652313554 566.3379987749645 -2.7530757018431036 0.044138352098297196 KAPPPPIS(ph)PTQLSDVSSPR ddPTM_BT-474_Trastuzumab_2h_R1 3 KAPPPPISPTQLSDVSSPR 19 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 KAPPPPIS(0.939)PT(0.061)QLSDVSSPR;KAPPPPIS(0.956)PT(0.044)QLSDVSSPR;KAPPPPIS(0.957)PT(0.043)QLSDVSSPR 242.43 1.2751e-24 1308140000.0 866270.0 1023610.0 1016280.0 994410.0 1000570.0 1231940.0 1211560.0 991950.0 1190760.0 1281210.0 True False 861606.0985716453 1057680.2400646897 1159363.390335886 1120302.2040408452 1127986.658656974 1146778.8874748268 1152952.214191343 1065974.3460200385 897313.153366525 1199442.0809009336 0.7183390613779946 0.8818101823393066 0.9665855557319255 0.9340194260979702 0.9404261169574045 0.9560935919585629 0.9612404238188218 0.888725152296938 0.7481087812864866 1.0 20.193932063250276 4.708071277878502 3.3425247822124358 0.9227950692363927 0.6977343232671351 0.4701066657640318 0.06537252680062065 0.24795239101033703 4.666350287248494 0.015839272799557103 0.1368771961808329 51058.87926577448 -4.708071277878502 -0.22506074596925751 KAPPPPISPTQLS(ph)DVSSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAPPPPISPTQLSDVSSPR 19 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 KAPPPPISPT(0.001)QLS(0.994)DVS(0.004)S(0.001)PR;KAPPPPISPTQLS(1)DVSSPR 235.99 2.1713e-24 421700000.0 413510.0 399900.0 416630.0 384530.0 374200.0 458310.0 403990.0 353770.0 447960.0 394590.0 True False 411283.7081052803 413210.42975534516 475287.8825871221 433211.45857325126 421852.1519428327 426628.10844569455 384447.46030833013 380170.1138076603 337566.2603564681 369406.9283745052 1.1133621935978428 1.1185779096607305 1.2866241699323913 1.1727215309130883 1.1419714129323488 1.1549001268681633 1.0407153487889562 1.0291363929759416 0.913805980418004 1.0 18.494851399332703 2.012531431149247 1.3252252614145588 0.9649476326069155 1.173643458318184 0.7264311171244647 0.0519209615659272 0.23140211558116666 0.7560174174576934 0.03749054924552054 0.017747312264047844 102.92750161123062 -2.012531431149247 0.20869582571126855 KAPQHTAVGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAPQHTAVGFK 11 1 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 112.13 0.0010178 464920000.0 330230.0 344560.0 337110.0 320890.0 300240.0 335620.0 352840.0 352120.0 574070.0 466000.0 False True 328452.0783720025 356028.47130908136 384572.1577873528 361514.64109840686 338473.78433809703 312419.37936449953 335771.78122030577 378396.98242913047 432598.1406438918 436259.4810373283 0.7528823845639212 0.8160933728306021 0.8815216046948149 0.8286688468954422 0.7758542772142887 0.7161320107511143 0.7696607083974769 0.8673667825611179 0.9916074250472892 1.0 18.73482695956289 1.3731621498192619 2.737769049903736 1.0019641243822623 0.7944558894484681 0.7809009667584517 0.042837073633585195 0.13459516209085906 1.7035588650841789 0.04066782290706186 0.01268872010236529 23.61359714747636 -1.3731621498192619 -0.20750823493379422 KAPSDLYQIILK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAPSDLYQIILK 12 1 P07384;E9PL37 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 158.4 9.696e-05 1865470000.0 4594300.0 5023800.0 4515100.0 4090900.0 4386400.0 5685200.0 5423600.0 4965500.0 7280500.0 5930500.0 False True 4569564.799274718 5191014.146048769 5150786.834047271 4608807.520550574 4944982.039770286 5292195.505521286 5161239.747835988 5336050.824298102 5486318.328701828 5552010.412643502 0.8230468712501915 0.934979180555454 0.9277336408299 0.8301150714802359 0.8906651234855684 0.9532034546386039 0.929616366727696 0.9611024525722074 0.98816787450685 1.0 22.40457884297793 2.00690943438531 0.7549000967186077 0.9987178316485307 0.8824553807593151 0.5942601122892615 0.03626068498814586 0.49104623715903134 0.5284602609550862 0.031957001466273054 0.017073004977743153 101.60367915098443 -2.00690943438531 -0.11626245088921561 KAPSS(ph)PPPPPPPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KAPSSPPPPPPPLR 14 1 Q13796 Q13796 SHROOM2 Protein Shroom2 1 KAPS(0.143)S(0.857)PPPPPPPLR;KAPS(0.241)S(0.759)PPPPPPPLR;KAPS(0.173)S(0.827)PPPPPPPLR 84.94 0.0048595 3579080000.0 1640360.0 1722170.0 1620390.0 1575400.0 1535300.0 1816160.0 1787970.0 1771590.0 2246420.0 1862010.0 True False 1631528.4840211307 1779491.3873762523 1848526.8273176341 1774845.4784705993 1730811.3545639531 1690613.133980783 1701479.0603913097 1903795.0417517412 1692819.8914857993 1743174.9276530358 0.9359522433114484 1.0208335142658986 1.0604367915080337 1.0181683147888112 0.992907439814013 0.9698470917413775 0.9760805031094244 1.0921422810474677 0.9711130332541937 1.0 20.733285920540265 KAPT(ph)PQEK ddPTM_BT-474_Trastuzumab_2h_R1 5 KAPTPQEK 8 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 KAPT(1)PQEK;KAPT(1)PQEK;KAPT(1)PQEK;KAPT(1)PQEK;KAPT(1)PQEK 103.91 0.0090566 3075420000.0 12757280.0 8319860.0 7228730.0 6644010.0 7092070.0 9182680.0 10837430.0 10721700.0 17490430.0 11315620.0 True False 12688596.22194706 8596781.510638416 8246472.3507524775 7485140.984774299 7995203.076507758 8547902.945303638 10313182.107897004 11521807.69768943 13180147.88625454 10593447.443810312 1.1977778045579424 0.8115187767001633 0.7784503009519192 0.7065821607627668 0.7547309899743079 0.8069047390515093 0.9735435194822186 1.0876353291790346 1.244179286881309 1.0 23.336668828680203 1.925899820658115 2.3664770952508163 1.1268784003490175 0.8285963621886517 0.4257652555395931 0.1385882520863441 0.2691796334680888 2.7546985939359043 0.07923162070445208 0.04052804747027724 84.31402469399758 -1.925899820658115 -0.2982820381603658 KAPTTDEDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KAPTTDEDKK 10 2 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 79.82 0.014544 647650000.0 363560.0 232890.0 223170.0 221530.0 245520.0 306070.0 341910.0 301260.0 591130.0 368350.0 False True 361602.6333553129 240641.6028650218 254590.3961715862 249575.67528601718 276785.51668894774 284912.10131128156 325370.5070769605 323741.55096728314 445453.9322361803 344841.5876396993 1.0486050590079237 0.697832313417056 0.7382821715737773 0.7237400714753154 0.8026454076593031 0.826211546180927 0.9435361590346153 0.9388123781216838 1.2917639525010067 1.0 18.395574247307955 1.7206047995108167 1.5144978175064385 1.1281462634900559 0.7946681294635463 0.5178553349635797 0.12066118588146121 0.28009189687058583 1.2488023023815558 0.09094542031023195 0.03507850502573755 52.55388174725342 -1.7206047995108167 -0.3334781340265096 KAQCPIVER ddPTM_BT-474_Trastuzumab_2h_R1 5 KAQCPIVER 9 1 M0R0F0;M0R0R2;P46782 M0R0F0 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed 0 ;;;; 174.86 8.714600000000001e-05 5462490000.0 4235740.0 4960940.0 4827910.0 4455830.0 4670980.0 5076610.0 5036430.0 4441480.0 5889960.0 5223600.0 False True 4212935.246474955 5126061.888948442 5507637.763054006 5019937.621133457 5265801.615932471 4725675.899754525 4792798.639869021 4772925.790978451 4438458.279420456 4890225.375851038 0.8615012443555907 1.048226103087603 1.1262543829271918 1.0265247990252075 1.076801417361275 0.9663513512262456 0.9800772503322381 0.9760134603505523 0.9076183484995389 1.0 22.221469525530303 2.710685455776852 22.671375303279493 0.966685004356238 1.0343849452233496 0.1712315219101458 0.06726553985388115 389.4268678341623 316726.43153014715 0.021852728872969438 0.020610185580937954 513.6714826304274 -2.710685455776852 0.06769994086711151 KAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR 31 2 P62917;E9PKZ0;G3V1A1;E9PKU4 P62917 RPL8 60S ribosomal protein L8 0 173.68 2.1658000000000002e-13 693290000.0 606890.0 532220.0 531640.0 494720.0 472200.0 607490.0 593240.0 595370.0 884000.0 678520.0 False True 603622.5716718173 549934.620966216 606490.2909022815 557351.501275215 532331.8710513246 565495.6461776416 564542.7148031238 639799.5326276023 666150.0449931202 635216.2726898026 0.950263079873249 0.865743912128598 0.9547776355509883 0.8774200618556703 0.8380324842705662 0.8902411202141732 0.8887409518219459 1.0072152747573548 1.0486980161454769 1.0 19.276888345715182 1.6821723954363887 4.187517650107792 1.0252923823743558 0.8928742928507016 0.72139781128955 0.03523655971372754 0.0868955365316793 3.56492960027848 0.019459510091666292 0.009210838249205832 48.10302579999131 -1.6821723954363887 -0.1324180895236542 KAQPQDSR ddPTM_BT-474_Trastuzumab_2h_R1 6 KAQPQDSR 8 1 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;;;;; 133.57 0.0014649 689027000.0 2227230.0 2396420.0 2240520.0 2081920.0 1914670.0 1400596.0 2283640.0 2070670.0 2958350.0 2448820.0 False True 2215238.841148515 2476183.3910335195 2555965.741051046 2345490.858535932 2158491.875361796 1303776.0951683484 2173171.6088480335 2225193.910049209 2229304.282359044 2292534.2110597193 0.9662838750504515 1.0801074981074803 1.1149084400662252 1.0230996105622927 0.941530933300244 0.5687051861117834 0.94793421112939 0.9706262612415356 0.9724191995061015 1.0 21.1285118323737 3.2118430775954128 4.059618194627928 0.8894959364477132 1.0558836131598246 0.26410532096176365 0.12067515172676693 0.28978880787281946 10.477473145564572 0.037175402790928916 0.04722311492865882 1628.7074300287559 -3.2118430775954128 0.1663876767121114 KAQVS(ph)PQS ddPTM_BT-474_Trastuzumab_2h_R1 5 KAQVSPQS 8 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KAQVS(0.995)PQS(0.005);KAQVS(0.998)PQS(0.002);KAQVS(0.612)PQS(0.388);KAQVS(0.94)PQS(0.06);KAQVS(0.692)PQS(0.308) 80.758 0.026078 27576100000.0 21133500.0 19819700.0 18007400.0 18119700.0 18067900.0 16601000.0 21384500.0 20156200.0 25141900.0 22224400.0 True False 21019719.5841526 20479386.733238336 20542685.396873333 20413652.16214532 20368739.96816648 15453411.94455056 20350050.038276922 21660357.99510971 18946015.629199672 20806019.7647339 1.0102710572149376 0.9843010323363623 0.9873433568343083 0.9811416307864111 0.9789830154199601 0.7427375403508949 0.9780847210752994 1.0410620695373898 0.91060259691347 1.0 24.31049766508975 2.97626064310788 24.99871055855491 0.9404481948701728 0.9888088148860561 0.11441716182597772 0.07457092009044472 2180.199495860053 2295859.8418964366 0.02455376181910671 0.026186546435025503 946.8052188188236 -2.97626064310788 0.04836062001588326 KAQVSPQS(ph) ddPTM_BT-474_Trastuzumab_2h_R1 1 KAQVSPQS 8 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KAQVS(0.283)PQS(0.717) 64.73 0.070023 10694000000.0 8392000.0 7813400.0 6912800.0 6895800.0 6552500.0 6048200.0 8316300.0 7715400.0 9646600.0 8147600.0 True False 8346818.404438854 8073464.295699956 7886062.152865273 7768807.572957696 7386922.035289707 5630102.169931368 7914008.797648879 8291162.326007353 7269324.687817465 7627613.192488688 1.0942896806380278 1.058452243442329 1.0338833333382837 1.0185109518411408 0.9684447610117405 0.7381210908119497 1.0375472114189297 1.086993023475823 0.9530274417921389 1.0 22.86280025363717 3.82673402433466 1.73715984289212 0.9735807701887987 1.0766850009630313 0.20737604023641631 0.0865678930901266 0.7378702607699906 4.282741156444898 0.028077013197895868 0.06911734260067207 6710.177745693884 -3.82673402433466 0.10310423077423259 KAS(ph)GS(ph)ENEGDYNPGR ddPTM_BT-474_Trastuzumab_2h_R1 7 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 KAS(1)GS(0.999)ENEGDY(0.001)NPGR;KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDYNPGR 192.6 8.5107e-08 6481870000.0 4433800.0 5068950.0 3878464.0 4166986.0 4475560.0 6571640.0 5887350.0 5736720.0 7856310.0 5368710.0 True False 4409928.913441485 5237666.936505018 4424518.018986585 4694526.000349301 5045496.037277563 6117357.9947766 5602556.388638945 6164823.1768739065 5920227.669660519 5026074.331416127 0.8774102057895671 1.0420989804639982 0.880312889789664 0.9340343359041786 1.003864189938465 1.2171244576585871 1.1146982752760823 1.2265682459847207 1.1779029276696866 1.0 22.261000576947925 2.902514502096267 3.9335158500319456 1.1632098118027552 0.9396103442214779 0.6507963361055854 0.07387966861481428 0.13002642200661185 3.6103685464035324 0.021653427157962278 0.02344676879276846 798.94061969537 -2.902514502096267 -0.22359946758127724 KAS(ph)GS(ph)ENEGDYNPGRK ddPTM_BT-474_Trastuzumab_2h_R1 3 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 KAS(1)GS(1)ENEGDYNPGRK;KAS(1)GS(1)ENEGDYNPGRK;KAS(1)GS(1)ENEGDYNPGRK 128.01 3.3851e-05 1522230000.0 1779950.0 1885910.0 1313920.0 1587830.0 1807370.0 2877030.0 2679970.0 2540510.0 4410680.0 2526850.0 True False 1770366.9469710342 1948681.3742933287 1498908.515202628 1788849.1151961223 2037527.8563787197 2678147.6879001427 2550329.612620402 2730095.7566483887 3323727.0140839955 2365584.269654877 0.7483846463137493 0.8237632450006224 0.6336314180096018 0.7561975864242213 0.8613211892366791 1.1321294794925512 1.078097130309578 1.1540894110894182 1.4050342897185841 1.0 21.173765124486884 2.8223539368965085 1.8911806660977653 1.1703286502298258 0.7350269652850131 0.7779395128336027 0.10558428105728188 0.15289822948471227 1.083803829492336 0.03777413194637027 0.039392958585584156 664.2842214546263 -2.8223539368965085 -0.4353016849448127 KAS(ph)GSENEGDYNPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 KAS(0.752)GS(0.248)ENEGDYNPGR;KAS(0.998)GS(0.002)ENEGDYNPGR;KAS(0.979)GS(0.021)ENEGDYNPGR;KAS(0.978)GS(0.022)ENEGDYNPGR 208.63 1.711e-09 7595270000.0 1428830.0 1575554.0 1441464.0 1352062.0 1434704.0 1849930.0 1957938.0 1733410.0 2437510.0 1631528.0 True False 1421137.338037936 1627995.3624474937 1644409.601770308 1523232.91056996 1617405.0502431563 1722048.693366812 1863225.0588904964 1862765.8562776274 1836818.3214606098 1527402.4862186029 0.9304275401281112 1.0658587878025059 1.0766052933705643 0.9972701526373933 1.0589252438938823 1.1274360942216977 1.2198651473347348 1.2195645045002415 1.2025764905018774 1.0 20.542648846494505 2.6692343607718865 2.49252205582748 1.18395837266765 1.0259065200714146 0.4363672115160564 0.07185969982737724 0.23165513852039435 2.8342011208498983 0.024337122558797462 0.023187750686911292 466.9112742975567 -2.6692343607718865 -0.15805185259623533 KAS(ph)GSENEGDYNPGRK ddPTM_BT-474_Trastuzumab_2h_R1 3 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 KAS(0.984)GS(0.016)ENEGDYNPGRK;KAS(0.807)GS(0.193)ENEGDYNPGRK;KAS(0.808)GS(0.192)ENEGDYNPGRK 220.82 5.8118e-15 1501130000.0 1045051.0 1279730.0 1216770.0 1090176.0 1124835.0 1605360.0 1555620.0 1466060.0 2515780.0 1563330.0 True False 1039424.5615320805 1322325.0394368786 1388080.6396455655 1228192.169821736 1268076.0698306137 1494385.2418109567 1480368.7175545054 1575464.841701837 1895799.728724879 1463556.9409658485 0.7102043879796919 0.9035009178148092 0.9484295422968144 0.8391830447069673 0.8664343930436825 1.0210639572552358 1.0114869303120946 1.0764629633488239 1.2953371854967115 1.0 20.481047445478083 2.3389140442162066 1.0657655249136997 1.1355515139916483 0.852190342632671 0.6171837371215907 0.0923014660940249 0.3452540059410951 0.7674481639719224 0.059927295289764655 0.03706021144056952 218.2297947582176 -2.3389140442162066 -0.2833611713589773 KAS(ph)ISLTDDEVDDEEETIEEEEANEGVVDHQTELSNLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KASISLTDDEVDDEEETIEEEEANEGVVDHQTELSNLAK 39 1 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A0A0A0MR80 Q96L91-4 EP400 E1A-binding protein p400 1 KAS(0.758)IS(0.121)LT(0.121)DDEVDDEEETIEEEEANEGVVDHQTELSNLAK 114.85 2.6379e-06 119220000.0 45585.0 36520.0 29642.0 36334.0 26209.0 47994.0 52543.0 48261.0 63017.0 55721.0 True False 45339.575424969626 37735.54612319379 33815.33594711727 40933.88067459106 29546.560797086306 44676.28774572374 50001.29435624794 51862.48088439239 47487.30473453785 52164.8380748518 0.8691597079226328 0.7233904583207315 0.6482400251793237 0.7847025349883127 0.5664076011256792 0.8564444824235308 0.958524864670348 0.9942038123452898 0.910331681014669 1.0 15.6707900593736 2.471987650138716 4.444156701048783 0.9647160218844243 0.7169587115086865 0.6905198852261297 0.07807967845316177 0.10898869273618737 5.418561633434307 0.02651070338466065 0.023016770317631458 296.4747080979531 -2.471987650138716 -0.24775731037573778 KAS(ph)LTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KASLTSK 7 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 KAS(1)LTSK;KAS(0.999)LT(0.001)SK 72.2 0.032003 283420000.0 1044130.0 777420.0 642650.0 676270.0 689370.0 622280.0 854610.0 900780.0 1372110.0 1055310.0 True False 1038508.5200937494 803295.9547396852 733129.5339860637 761885.712660475 777157.1832838869 579263.2482895567 813269.2493727622 968000.7776681585 1033971.875832026 987959.2123036542 1.0511653792591578 0.8130861524805421 0.7420645760026909 0.7711712216175031 0.7866288138270062 0.5863230395300137 0.8231809969932239 0.9797983212394387 1.0465734444857118 1.0 19.914091956103125 1.7154043750142527 3.5553051854854707 1.0185339209935087 0.783684825017405 0.4546064719032681 0.10726013408340487 0.18081152081396593 5.11755291419405 0.062261156766171735 0.029540025770366938 51.92833226929918 -1.7154043750142527 -0.2348490959761037 KAS(ph)PEAASTPRDPIDVDLPEEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;H3BVD2;H3BT29 P29590-2 PML Protein PML 1 KAS(1)PEAASTPRDPIDVDLPEEAER;KAS(1)PEAASTPRDPIDVDLPEEAER 168.5 5.4242e-12 1086240000.0 394590.0 379470.0 370760.0 395160.0 409600.0 451620.0 480380.0 424520.0 644510.0 498180.0 True False 392465.57128307084 392100.42955554056 422959.78529630875 445187.2154833322 461760.1321105935 420400.5723991282 457142.1841701916 456199.8380688814 485679.146491534 466385.72588664375 0.841504251737028 0.8407213338489729 0.906888358326623 0.9545472572879217 0.9900820425683986 0.9014010272289243 0.9801804789396603 0.9781599494744442 1.0413679483183402 1.0 18.831164108799225 6.640063825454839 0.2902684737216329 1.0109631848153318 0.2689941440593093 0.7604932736590676 0.03159850171069397 11.468691630163205 0.3283140242999225 0.03457296118335125 3.733516576433387 4365799.888667433 -6.640063825454839 -0.7419690407560224 KAS(ph)PEPEGEAAGK ddPTM_BT-474_Trastuzumab_2h_R1 8 KASPEPEGEAAGK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK 209.89 3.6272e-08 9332790000.0 9395460.0 6413590.0 6233720.0 5919710.0 5745140.0 8319520.0 8457540.0 8194810.0 12969360.0 8393370.0 True False 9344875.887293745 6627062.466052979 7111373.591534435 6669144.6790384585 6476749.524887343 7744411.164443547 8048416.479259678 8806348.334602002 9773235.008520342 7857697.940674423 1.1892638222858027 0.8433847312644575 0.9050199747082754 0.8487402709280077 0.8242553447315952 0.9855827015639707 1.0242715538348737 1.1207287937370314 1.24377840460504 1.0 22.90567527926039 2.069006958524972 1.944554950526036 1.1342253446355473 0.914546258399601 0.36268528432234803 0.11230915289749961 0.3281294859045922 2.363135084052737 0.06126443439049785 0.03360005646432333 117.22141473112194 -2.069006958524972 -0.21967908623594623 KAS(ph)PEPPDSAEGALK ddPTM_BT-474_Trastuzumab_2h_R1 7 KASPEPPDSAEGALK 15 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(0.994)PEPPDS(0.006)AEGALK;KAS(0.905)PEPPDS(0.095)AEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK 254.39 6.5823e-25 17687520000.0 16969570.0 12577410.0 11427900.0 10191730.0 10194640.0 16492670.0 17258910.0 14985490.0 23867700.0 16045150.0 True False 16878207.720616486 12996041.488645086 13036848.986912543 11482001.973018391 11492866.975634625 15352570.542469189 16424030.587861203 16103783.358576346 17985825.14579447 15021134.790055983 1.1236306681563026 0.8651837341376157 0.8679004062691029 0.7643897836946045 0.7651130980625327 1.0220646280754113 1.0933947945619886 1.072075018542346 1.1973679350578172 1.0 23.84049047134762 2.537593802736112 5.093047104042923 1.0907057228213823 0.8702241093015015 0.49131727429812155 0.10328499967201103 0.17927329750236154 9.528196870728209 0.035086996703819956 0.03237755860025572 344.82107601474377 -2.537593802736112 -0.22048161351988083 KAS(ph)SPNLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KASSPNLHR 9 1 A0A087X030;P51956-2;P51956 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 KAS(0.685)S(0.315)PNLHR;KAS(0.5)S(0.5)PNLHR 69.86399999999999 0.033097 93587000.0 108481.0 177577.0 158212.0 191855.0 179900.0 140602.0 168110.0 124825.0 131793.0 141842.0 True False 107896.95034937204 183487.54309743646 180486.87439664363 216143.82332866386 202809.1986491599 130882.51468150689 159977.87705743551 134140.0753485068 99314.38108572211 132789.5221229542 0.8125411449968672 1.3817923294244503 1.3591951496709573 1.627717457470245 1.5272982040056757 0.9856388711175453 1.2047477428927467 1.0101706309651606 0.7479082648837583 1.0 17.018781788458824 2.037513763428358 1.2680976785602451 0.9000541756567995 1.3399299841952717 0.34884970474380383 0.2301139138714061 0.5088282627183612 1.5235004873058104 0.16842317708516322 0.0809238573830096 109.02190424762428 -2.037513763428358 0.4398758085384722 KAS(ph)SSEGSMK ddPTM_BT-474_Trastuzumab_2h_R1 3 KASSSEGSMK 10 1 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 KAS(0.954)S(0.038)S(0.008)EGSMK;KAS(0.975)S(0.024)S(0.001)EGSMK;KAS(0.979)S(0.018)S(0.002)EGSMK 70.529 0.032897 291934000.0 564700.0 502430.0 480516.0 468292.0 453875.0 482394.0 562033.0 539698.0 808480.0 647960.0 True False 561659.7179440686 519153.0788246515 548168.4760800548 527577.7191849396 511673.29092210886 449047.2382133323 534845.3166154412 579973.0052909142 609240.9370769653 606606.6380535343 0.9259043385122022 0.8558315162697496 0.9036638270873616 0.8697196603021343 0.8435009754656734 0.7402610028373988 0.8817004019798412 0.956094063117935 1.0043426808382512 1.0 19.210401759795065 1.6594306620906702 2.9124031346297503 0.996974918669581 0.8557755025008182 0.6224127524761759 0.046226673239303934 0.15176424600721053 2.9861388710082157 0.031129128509147896 0.013283357103446613 45.64893629189895 -1.6594306620906702 -0.14119941616876275 KAS(ph)VHSSGR ddPTM_BT-474_Trastuzumab_2h_R1 6 KASVHSSGR 9 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 KAS(0.6)VHS(0.2)S(0.2)GR;KAS(0.799)VHS(0.183)S(0.018)GR;KAS(0.756)VHS(0.22)S(0.023)GR;KAS(0.682)VHS(0.229)S(0.089)GR;KAS(0.754)VHS(0.221)S(0.025)GR;KAS(0.659)VHS(0.282)S(0.058)GR 145.81 5.897600000000001e-05 3400400000.0 1762800.0 1095934.0 1285133.0 2119170.0 1099431.0 695740.0 1245296.0 1783380.0 1962190.0 2027290.0 True False 1753309.280665491 1132411.500683908 1466068.5558237184 2387456.704716604 1239437.021011919 647645.1313957955 1185056.2749873088 1916464.871420148 1478634.566498925 1897906.6165497114 0.9238121967522879 0.5966634452977296 0.7724661176896835 1.2579421368248704 0.6530547974299951 0.3412418323158482 0.6244017828135692 1.0097782760798708 0.7790871023923192 1.0 20.855977577934507 1.7315548824248816 14.825581938954574 0.919907936036506 0.7357787685412034 0.12429239380489521 0.23193738024701172 0.22161126754047014 324.7634368077011 0.11535275980296601 0.06361789766091275 53.89579499694169 -1.7315548824248816 -0.18412916749530261 KASDSELER ddPTM_BT-474_Trastuzumab_2h_R1 2 KASDSELER 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 111.33 0.0034338000000000003 1573220000.0 1990680.0 2655200.0 2549200.0 2383400.0 2287490.0 2518000.0 2779400.0 2288000.0 2986500.0 2666200.0 False True 1979962.4000653382 2743576.7268977044 2908105.2019563927 2685138.1956244935 2578788.292484528 2343936.5867344323 2644949.8036609176 2458742.178228586 2250517.0920497226 2496040.8333513397 0.7932411896510994 1.0991714118771077 1.1650871905215547 1.0757589217878538 1.0331514845540752 0.9390617955505629 1.0596580666148974 0.9850568730189104 0.901634725673954 1.0 21.25121010512354 2.943182972428325 9.100978009334657 0.9839375956713028 1.0483112942205848 0.06527433494289514 0.09839631000080122 1.1850330189575913 183.01635019987117 0.030218903059022896 0.03216094331096588 877.3703878419461 -2.943182972428325 0.06437369854928199 KASDVHEVR ddPTM_BT-474_Trastuzumab_2h_R1 11 KASDVHEVR 9 1 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;;; 133.23 0.00018364 72736859000.0 94041653.0 105035685.0 98248799.0 96530105.0 94346792.0 115432115.0 124050305.0 103095414.0 128584380.0 114629559.0 False True 93535343.1892578 108531734.27981251 112081375.9053302 108750806.39554523 106361296.72395205 107452564.5880209 118049517.82896549 110788917.3005847 96896482.49141692 107313802.40531702 0.8716058987079881 1.0113492565466597 1.0444264707162865 1.013390672569785 0.9911241083624321 1.0012930506569861 1.100040397255708 1.032382739380927 0.90292656041993 1.0 26.67726040258469 4.73710303393036 5.750956090780057 1.0171139784051821 0.8671475078261262 0.43589449247221745 0.047041378486874154 0.12249506841077687 17.646478615830173 0.011255325601513757 0.07225730350705208 54588.73544434486 -4.73710303393036 -0.149966470579056 KASGPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KASGPPK 7 1 P52943;H0YFA4;P52943-2 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 0 ; 81.548 0.043137 1802140000.0 1024440.0 988410.0 975560.0 906340.0 895210.0 721570.0 1091530.0 1082730.0 1573170.0 1344810.0 False True 1018924.528865983 1021308.6293435387 1112910.3682804718 1021082.5510708658 1009209.6871746221 671689.564293076 1038728.5238504729 1163528.8105915368 1185483.3328979954 1258983.0744502349 0.8093234528279268 0.8112171244156857 0.8839756394393552 0.8110375522853999 0.8016070332123548 0.5335175491428948 0.8250536047151059 0.9241814558147412 0.94161975403495 1.0 20.263827457169945 1.7261186965900845 3.4014073113777417 0.9570603740954139 0.7779675142246699 0.4542531549549391 0.0882925591992326 0.2119503527027366 5.34984952972117 0.05344043888440771 0.02540165272196608 53.22537091179216 -1.7261186965900845 -0.17909285987074397 KASGS(ph)ENEGDYNPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 KAS(0.096)GS(0.904)ENEGDYNPGR 196.71 9.3155e-09 329440000.0 245190.0 300780.0 296680.0 268630.0 297340.0 406570.0 352440.0 363120.0 473860.0 353170.0 True False 243869.92428316982 310791.2804746502 338449.965211212 302638.5304567456 335204.4865277437 378464.7728628351 335391.1307484544 390217.8582859984 357083.55239868804 330630.388235951 0.7375907749566398 0.9399961150965264 1.0236505090079036 0.915337915765839 1.0138344763655796 1.1446763102511543 1.0143989865478003 1.18022381538482 1.0800082663419885 1.0 18.334859803248936 5.783918572442242 0.49296856498771635 1.094920686282496 2.1641854235749735e-20 0.6641156478587698 0.06861083233957775 6.819196744350319 0.5801136933341996 0.038788496544293886 5.397690859771171 608020.9903758748 -5.783918572442242 -1.094920686282496 KASGS(ph)ENEGDYNPGRK ddPTM_BT-474_Trastuzumab_2h_R1 1 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 KAS(0.128)GS(0.872)ENEGDYNPGRK 102.98 0.0011615 113850000.0 45897.0 53783.0 50301.0 43124.0 44908.0 68163.0 67614.0 65643.0 114950.0 70150.0 True False 45649.895651636085 55573.13464248993 57382.94357587024 48583.493978396655 50626.76760943008 63451.052248442866 64343.252509437036 70541.6139884 86622.11275108505 65672.96694156343 0.695109384844085 0.8462102023187038 0.8737681004564671 0.7397791852715717 0.770892042299206 0.9661669816882547 0.9797524842556666 1.074134720472866 1.318991919889388 1.0 16.003012013641147 2.18251543445569 1.2589099550099296 1.1478947558871846 0.7904908733634389 0.7170494201779585 0.09327841541129736 0.2404007470641808 0.7284731862651354 0.060122176540140695 0.032679676173923165 152.23532350553472 -2.18251543445569 -0.35740388252374566 KASS(ph)PNLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 KASSPNLHR 9 1 A0A087X030;P51956-2;P51956 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 KAS(0.193)S(0.807)PNLHR 104.17 0.002023 45969000.0 88979.0 97433.0 100560.0 94418.0 73428.0 107290.0 108240.0 100900.0 128080.0 111990.0 True False 88499.94695049622 100675.99850550776 114717.97391681095 106371.30911910436 82778.62055814617 99873.2948334938 103004.01768304576 108429.67035981844 96516.40018407103 104842.70232053712 0.8441211929078672 0.9602575694559031 1.0941913111518435 1.0145800018955426 0.7895506194133177 0.9526013029323654 0.9824624451984276 1.034212853731248 0.9205829118081107 1.0 16.67786691915811 -0.8808946835343632 4.579542533916927 1.0000002816149922 0.9624468675800905 0.018001953760343747 0.08448303919010382 3677386667799.261 895585829004.2285 11580542.935251852 0.02032952932188109 0.13155438130517846 0.8808946835343632 -0.037553414034901755 KASS(ph)PSPLTIGTPESQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 KAS(0.318)S(0.679)PS(0.003)PLTIGTPESQR 128.04 2.343e-05 418470000.0 154300.0 179910.0 178110.0 167660.0 163140.0 231360.0 232540.0 170210.0 254020.0 235610.0 True False 153469.26594434178 185898.1955921085 203186.33984012713 188885.73880943278 183914.91199346274 215366.62776285852 221291.15181093413 182911.9345088672 191420.17469361142 220573.1680841307 0.6957748636307647 0.8427960536034168 0.9211743277977857 0.856340508004982 0.8338045537946581 0.9763954049057938 1.0032550818988535 0.8292574119400652 0.8678307355162991 1.0 17.750897777486017 4.716034474025983 2.219624839073988 0.903988459863857 0.6472829143314512 0.520966954263393 0.06238628994554782 0.4991385327649903 2.9459252445995125 0.016117094011419374 0.24744317230902302 52003.72751307653 -4.716034474025983 -0.25670554553240577 KASSPS(ph)PLTIGT(ph)PESQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 KAS(0.007)S(0.008)PS(0.986)PLT(0.149)IGT(0.848)PES(0.003)QR 73.711 0.022238 178170000.0 102910.0 96112.0 90030.0 89095.0 101370.0 109720.0 107150.0 105270.0 129040.0 130450.0 True False 102355.94399437583 99311.02981906902 102705.44144521185 100374.41786488374 114278.86863293686 102135.31465309835 101966.7451472503 113125.78195022873 97239.82104741198 122124.56931613611 0.8381273691898434 0.8131945142176008 0.8409891803126429 0.8219019188927567 0.9357565743966754 0.8363207766056243 0.834940468721699 0.9263146849458868 0.7962347101154841 1.0 16.8979939488387 -4.9999999999988844 0.19488154806053026 1.6356820517314763 0.8286510523338965 0.49446406115319275 0.04456270114761234 112.95519098157327 1.1119879423309216 27.979871059864877 0.10963539042545294 1.0000000000025686e-05 4.9999999999988844 -0.8070309993975798 KASSPS(ph)PLTIGTPESQR ddPTM_BT-474_Trastuzumab_2h_R1 4 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 KAS(0.215)S(0.215)PS(0.567)PLT(0.003)IGTPESQR;KAS(0.02)S(0.016)PS(0.964)PLTIGTPESQR;KASS(0.005)PS(0.995)PLTIGTPESQR;KAS(0.019)S(0.097)PS(0.884)PLTIGTPESQR 168.99 1.4329e-09 1876685000.0 818541.0 1129830.0 1073168.0 1070765.0 1152945.0 1112490.0 1121270.0 972070.0 991620.0 1194250.0 True False 814134.0662044552 1167435.7085533421 1224260.7262565263 1206323.7392119917 1299765.7117095909 1035586.1848197738 1067029.8864326384 1044610.7994714424 747248.5380272379 1118031.942551135 0.7281849786391228 1.044188152522259 1.0950140865054334 1.0789707282060221 1.1625479221494996 0.9262581375419061 0.954382290722285 0.934330013047606 0.6683606340639603 1.0 20.092529976379875 1.8288490053357256 1.6452266851069435 0.8436274054724597 1.0222583179214557 0.17735342503973073 0.13535594817049168 0.5638029411184884 2.9052879747570453 0.09566240017199402 0.040756478272392996 67.42935498635205 -1.8288490053357256 0.17863091244899598 KASTAPGAEAS(ph)PSPCITER ddPTM_BT-474_Trastuzumab_2h_R1 1 KASTAPGAEASPSPCITER 19 1 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 KASTAPGAEAS(0.53)PS(0.468)PCIT(0.002)ER 87.881 0.0013093 0.0 172630.0 183410.0 170750.0 189610.0 180390.0 208370.0 240360.0 194950.0 271790.0 225890.0 True False 171700.57926099605 189514.69097631352 194790.11581439432 213614.60655884855 203361.59724470196 193965.87235021984 228732.86853563302 209498.15893604126 204810.99629941184 211473.50680584137 0.8119247741923448 0.8961628046879236 0.9211088365467716 1.0101246713375447 0.9616410127033683 0.9172112160995387 1.0816147705236565 0.9906591236905448 0.968494821847606 1.0 17.690117409678432 6.17981196340722 0.5350417136229383 1.0006769444105992 6.315471433066761e-07 0.6652224585521945 0.04054070523834575 9.92194057454208 0.6477040505590512 0.020175406927124925 8.689794771848824 1512906.063283875 -6.17981196340722 -1.000676312863456 KASTAPGAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 KASTAPGAEER 11 1 F5GYV5;F8WCT1;Q66PJ3-2;A0A0C4DH18;Q66PJ3-5 F5GYV5 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 0 ; 116.51 0.00157 175716000.0 189051.0 210493.0 186715.0 196207.0 183378.0 211085.0 212712.0 185835.0 253160.0 213314.0 False True 188033.17042154048 217499.13225929433 213002.8490441265 221046.78608244317 206730.10133343886 196493.19079064266 202422.3079212498 199702.95135100922 190772.11017020183 199700.11789269658 0.9415776635774196 1.0891287123634126 1.0666135367960963 1.106893618366398 1.0352027005037605 0.9839412858845829 1.0136313891913469 1.0000141885660487 0.9552929271314102 1.0 17.60747565891203 2.891582376040938 4.613344736452814 0.9936149421284548 1.0565598031772019 0.3005818477672746 0.043620381298798735 0.27440322973711934 9.372456162111675 0.013268123201270276 0.014237238345160675 779.0805748634525 -2.891582376040938 0.06294486104874708 KASVHSS(ph)GR ddPTM_BT-474_Trastuzumab_2h_R1 1 KASVHSSGR 9 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 KAS(0.294)VHS(0.194)S(0.512)GR 132.56 0.00018466 284690000.0 229720.0 146290.0 152350.0 274800.0 159780.0 90742.0 170290.0 222740.0 255400.0 283940.0 True False 228483.21304429162 151159.17421582772 173799.55575006103 309589.6518241209 180127.035909743 84469.21912369174 162052.42212902682 239361.98985080194 192460.0921846637 265818.7061067357 0.8595452757660609 0.5686551425584471 0.6538274085205814 1.1646646556913478 0.6776311515014882 0.31777003342185534 0.6096351325401344 0.9004708259872786 0.7240276465245606 1.0 18.02008310748518 0.8447278864165063 1.1847843774803253 0.9919722446910371 0.704829707586921 0.1346489409312268 0.21286173207958456 1.4360760791187683 3.8736193415156306 0.21103806185327897 0.0654233571740636 6.994036370697836 -0.8447278864165063 -0.2871425371041161 KASVVDPS(ph)TESSPAPQEGSEQPASPASPLSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14-2;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 KAS(0.118)VVDPS(0.221)T(0.221)ES(0.221)S(0.221)PAPQEGSEQPASPASPLSSR 76.029 0.0012373 793370000.0 27037.0 21358.0 21996.0 18039.0 21763.0 24673.0 25604.0 24663.0 37303.0 33821.0 True False 26891.43579609309 22068.888118816354 25092.845607340645 20322.735550419668 24534.389050592916 22967.4135839947 24365.43670322161 26503.478296176407 28110.175484590913 31662.514824385144 0.8493145899889933 0.6970036410948577 0.79250955732724 0.6418547504245603 0.7748717746101947 0.725381850158856 0.7695357377126713 0.8370616940308399 0.8878061531278505 1.0 14.950488226957006 1.2049093258567443 1.0842189382268401 0.9967144386851269 0.741416384179225 0.7007562732782349 0.05310893646545909 0.22905042774703663 0.5601846257066183 0.045641540052152686 0.0151578677158254 16.029106921536638 -1.2049093258567443 -0.25529805450590193 KASVVDPSTESSPAPQEGSEQPASPAS(ph)PLSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14-2;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 KASVVDPSTESSPAPQEGSEQPASPAS(1)PLSSR;KASVVDPSTESSPAPQEGSEQPASPAS(1)PLSSR;KASVVDPSTESSPAPQEGSEQPASPAS(1)PLSSR 291.53 1.3809e-89 2405810000.0 893860.0 1024350.0 999570.0 942770.0 957170.0 1156490.0 1169900.0 973030.0 1314060.0 1178290.0 True False 889047.5570771828 1058444.8705173482 1140300.7675818084 1062124.5853356149 1079059.9259089297 1076544.5683846313 1113307.4675479992 1045642.4395462237 990227.5205018782 1103090.5234151778 0.8059606516468693 0.959526755102921 1.033732720367706 0.9628625781746977 0.9782152080938478 0.9759349260400134 1.009262108517794 0.9479207892285265 0.8976847316538675 1.0 20.07311975764546 4.730344007885528 4.71019291909835 0.9751200558829712 0.7970566536617493 0.6780414706877993 0.03485376781152269 0.09851157059995276 6.0571822913811175 0.008357609275939794 0.05708230562050754 53745.735176635986 -4.730344007885528 -0.17806340222122197 KATGAAT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 KATGAATPK 9 1 P10412 P10412 HIST1H1E Histone H1.4 1 KATGAAT(1)PK 69.602 0.032099 415790000.0 968770.0 272570.0 246150.0 327940.0 144570.0 222190.0 292810.0 331230.0 772100.0 576670.0 True False 963554.2499604665 281642.32767795573 280805.7804258454 369457.1703755546 162980.13256647604 206830.5282790004 278645.66165717505 355948.06455185916 581826.3006099412 539866.4268879737 1.7848012063184127 0.5216889097947159 0.5201393649250108 0.6843492241317308 0.3018897350330985 0.3831142630432903 0.5161381552533477 0.6593261718527295 1.07772269515599 1.0 19.04224297596513 4.74078624916819 24.850313770779962 0.5972094203496033 1.784801654317433 0.6820164181979773 0.23576498653202277 101.897048128244 1137651.5187579805 0.055286502570065336 0.36826951127561186 55053.66668634506 -4.74078624916819 1.1875922339678295 KAVAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAVAVR 6 1 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 ; 106.84 0.050958 1515440000.0 3373500.0 3606300.0 3370400.0 3247600.0 3512100.0 3136400.0 3734000.0 3420800.0 4675600.0 3782700.0 False True 3355337.4508310836 3726333.5154456124 3844923.0239580367 3658745.8270160663 3959345.117152384 2919588.0502914493 3553372.1547347824 3676077.466470436 3523361.029830124 3541284.8474676004 0.947491544835912 1.0522546691239316 1.0857423758802036 1.0331690289281483 1.1180532737951712 0.8244431544046136 1.0034132547331869 1.0380631959327493 0.9949386117159444 1.0 21.755841462615535 KAVDDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 KAVDDFR 7 1 P21283;E7EV59 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 0 ; 93.429 0.023958 1023920000.0 3017500.0 3409400.0 3114900.0 3133300.0 3128100.0 3547400.0 3609300.0 3298900.0 4290900.0 3457700.0 False True 3001254.115275767 3522879.8179741763 3553450.8448038446 3529975.458735515 3526444.9932987024 3302176.5876813857 3434704.370135049 3545080.6694747787 3233465.190114231 3237026.6257140986 0.9271638643422282 1.0883073342645173 1.0977515033630414 1.0904993584835871 1.0894087077583914 1.0201264831897745 1.0610676918288684 1.0951657429424828 0.9988997818023564 1.0 21.626237801608273 4.744205588310822 24.667195096173447 1.0662053466792079 0.9271637919500291 0.5177465510592705 0.03809698560231994 387.08355282318155 1691402.3947327156 0.008729873056026178 0.0777299139957217 55488.83263716479 -4.744205588310822 -0.13904155472917878 KAVEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAVEEAR 7 1 Q96DT6 Q96DT6 ATG4C Cysteine protease ATG4C 0 101.64 0.014284 139430000.0 616780.0 693700.0 656190.0 531260.0 477010.0 474310.0 729960.0 565210.0 876930.0 671360.0 False True 613459.3250107008 716789.3851494946 748575.8482942735 598517.461528685 537754.3960402209 441522.0661056433 694649.0460820041 607388.8402782257 660822.3517599745 628513.2300197871 0.9760483880210249 1.1404523419927508 1.1910263977588929 0.9522750404312765 0.855597575922612 0.7024865110504406 1.1052258137193627 0.9663899044083825 1.051405635071787 1.0 19.261583587711154 3.674047297293772 9.129079049709889 0.9433237124288035 1.106156935882148 0.274513178588796 0.11520160413495892 0.5627303009534615 76.48517748678904 0.03207613393808841 0.04977446079798053 4721.144545812939 -3.674047297293772 0.1628332234533444 KAVEQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAVEQIR 7 1 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 0 80.165 0.049147 172220000.0 200750.0 284990.0 281420.0 246590.0 196240.0 208510.0 263430.0 204460.0 346520.0 243860.0 False True 199669.18430542172 294475.7198699072 321041.48985351005 277808.2687165579 221230.000794392 194096.1944797446 250686.88449967484 219717.84342684312 261124.78913010834 228296.64602095028 0.874604107355561 1.2898819365172969 1.406247071295339 1.2168740695869182 0.9690462153092262 0.8501929303943117 1.0980751967625046 0.9624225640471306 1.1437959938585585 1.0 17.80055013906081 3.243658465597389 24.51219326019744 0.9988163926399807 1.2184965326098434 0.29008736313850136 0.1462132994712276 114.15183840356772 548875.3932609938 0.04097999781586158 0.05381081509779872 1752.5017713222937 -3.243658465597389 0.2196801399698627 KAVIFCLSADKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAVIFCLSADKK 12 2 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ; 126.95 0.00015659999999999998 1588220000.0 1653090.0 1500370.0 1531570.0 1262650.0 1099660.0 1785300.0 1871850.0 1678380.0 3116080.0 1869100.0 False True 1644189.947115564 1550308.9084571837 1747201.743354916 1422501.360537578 1239695.1828045289 1661886.413144153 1781301.4643385927 1803629.238240952 2348163.8373327632 1749812.4377829833 0.9396378215248925 0.8859857633778332 0.9985080147039217 0.8129450504648891 0.7084731803456751 0.9497511717597386 1.0179956582063767 1.030755753757331 1.3419517353002088 1.0 20.738768857334716 1.8710452635405093 1.6351792246366905 1.153871289548879 0.8766571697466846 0.49793873654125553 0.11146953385915617 0.3046558040328513 1.5319710921353162 0.07767780135962533 0.034187834721356954 74.30965817301126 -1.8710452635405093 -0.27721411980219435 KAVLFCLSEDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAVLFCLSEDKK 12 2 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ; 187.11 6.129600000000001e-06 8912900000.0 11227500.0 9800800.0 8566200.0 7445500.0 7289300.0 12301300.0 11643600.0 11348700.0 21536100.0 11719000.0 False True 11167052.387492523 10127013.703291288 9772246.501254847 8388099.536595696 8217549.147933966 11450940.085145459 11080354.585128523 12195597.621530939 16228816.723955119 10971083.386859331 1.0178623198569354 0.9230641447335063 0.8907275750870332 0.7645643771737788 0.7490189307809451 1.0437383147466437 1.0099599277861722 1.1116128819272557 1.4792355642281658 1.0 23.387202662119858 1.9340511769306012 1.5139187055981294 1.2292187262923089 0.8784321824331669 0.49089051937558703 0.1392232880849429 0.31952690346111584 1.36383696303119 0.09596429975198836 0.04365880921770145 85.91147529681807 -1.9340511769306012 -0.350786543859142 KAVPMAPAPAS(ph)PGSSNDSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KAVPMAPAPASPGSSNDSSAR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 KAVPMAPAPAS(0.983)PGS(0.012)S(0.005)NDSSAR 91.809 0.0012008 318960000.0 206650.0 224370.0 231180.0 243930.0 248120.0 249090.0 251670.0 217450.0 291040.0 269330.0 True False 205537.41936097326 231838.01981547076 263728.1345474184 274811.5129892937 279716.61127754016 231870.99459478937 239495.76062723735 233677.22318872644 219317.09173619628 252141.12881498598 0.8151681573210962 0.919477202727949 1.045954445381002 1.089911488382931 1.1093652693321139 0.9196079817859852 0.9498480543528167 0.9267715437261811 0.8698187906389717 1.0 17.943871941692112 -0.5521582693776261 7.654814716600164 0.9999905363522688 0.9656607258161221 0.014318986098215025 0.08965835216387219 0.0 0.0 0.09254944701654205 0.021814113860154 0.2804411443660954 0.5521582693776261 -0.0343298105361467 KAVVLPGGTATS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 KAVVLPGGTATSPK 14 1 Q8N1G0;F8WCX2;Q8N1G0-2;H0Y5I5 Q8N1G0 ZNF687 Zinc finger protein 687 1 KAVVLPGGTAT(0.006)S(0.994)PK;KAVVLPGGTAT(0.074)S(0.926)PK 166.57 2.3186e-06 1148980000.0 2760000.0 1931540.0 1822490.0 1709890.0 1777810.0 2701100.0 2740200.0 2357300.0 4033900.0 2612000.0 True False 2745140.4666648246 1995830.1412594137 2079080.7506329424 1926361.8986810267 2004203.565594566 2514379.3147054724 2607646.057419457 2533213.696126857 3039799.396490667 2445299.9237542944 1.1226191274116517 0.8161903257229873 0.8502354784524379 0.7877814414370337 0.8196146191005852 1.028249864272322 1.0663910925968996 1.0359521429328749 1.2431192456030635 1.0 21.22157999645504 2.5922550354968954 4.075891713831207 1.0798172378338968 0.869663837307929 0.4643337592812842 0.1058461090303797 0.20784758213506574 5.913819984617057 0.035184785431268635 0.03270285846713614 391.0704809691419 -2.5922550354968954 -0.21015340052596787 KCAADLGLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KCAADLGLNK 10 1 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 72.29 0.077652 806300000.0 1973300.0 1383600.0 1228400.0 956380.0 921120.0 1395100.0 1336400.0 1143900.0 2360100.0 1369800.0 False True 1962675.9720542424 1429652.2895961378 1401348.0425557944 1077457.6099401498 1038419.1720940202 1298660.0207121563 1271753.226456233 1229263.6266065023 1778484.9787197527 1282378.1912552188 1.5304969980292114 1.1148445125979287 1.0927728279472106 0.8402026931583354 0.8097604740748076 1.0126965894834818 0.9917146401339016 0.9585812009195768 1.386864647923351 1.0 20.290390364967106 4.853686275344847 1.7058374002297894 0.9920773407816809 1.8327170639546733 0.5207473249818257 0.148816901718239 1.0097305826518268 2.3009549826156617 0.03888128721456895 1.5132242710377952 71398.03762304073 -4.853686275344847 0.8406397231729924 KCDSWWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KCDSWWAK 8 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 90.263 0.021359 364260000.0 1173800.0 1177400.0 1273000.0 1145500.0 939900.0 1292600.0 1301300.0 1149500.0 1940000.0 1447600.0 False True 1167480.3912214409 1216589.0472466713 1452227.3348856436 1290520.182549239 1059590.6937762385 1203245.6044531087 1238351.147551253 1235281.5270427272 1461912.99466816 1355212.9286472886 0.8614737703150207 0.8977106265219995 1.0715860985293213 0.9522637773514875 0.7818628876525502 0.8878646144957703 0.913768693741225 0.9115036470879366 1.0787330638347545 1.0 20.370088112393788 1.2496476192401849 24.99959219524961 1.0393665243687158 0.9113530722186124 0.34743270568248175 0.07102611943494028 219.09592971517702 494036.8899795033 0.050945461851632755 0.018218564715619983 17.76837123009477 -1.2496476192401849 -0.1280134521501034 KCEAEEAEPPAATQPQTSETQTSHLPESER ddPTM_BT-474_Trastuzumab_2h_R1 4 KCEAEEAEPPAATQPQTSETQTSHLPESER 30 1 S4R3H4;Q9UKV3;E7EQT4;A0A087WYN3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ;;; 247.52 3.2712999999999993e-46 1500416000.0 771180.0 819572.0 747361.0 721407.0 740844.0 877831.0 886114.0 803042.0 1008501.0 939144.0 False True 767028.052566152 846850.9585782635 852582.9326217356 812737.0522324743 835186.0920735857 817148.6091619036 843249.280535796 862969.0718046518 759969.441771048 879207.0258783699 0.8724089207543061 0.9631985796885766 0.9697180613063965 0.9243978133824751 0.9499310941461083 0.9294154677000369 0.9591020723399584 0.9815311370407946 0.8643805376916798 1.0 19.745843389567657 3.490736145826663 0.006285674410207445 1.8766065950826447 9.267621436659108e-08 0.12184079655874269 0.03957206727656578 23182.624865203557 36.520756274331234 5299.5141859819305 5604.69968204878 3095.5380439184905 -3.490736145826663 -1.8766065024064305 KCEPIVMTVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KCEPIVMTVPR 11 1 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ; 139.89 6.230600000000001e-05 3366000000.0 4006700.0 4728200.0 4302100.0 4389400.0 4107700.0 4893700.0 5268600.0 4600700.0 6290700.0 5040200.0 False True 3985128.372386223 4885575.278742744 4907798.285476453 4945097.589944674 4630791.246754601 4555410.037530697 5013737.689993495 4944027.5958812265 4740441.276061333 4718530.120867682 0.8445698703420389 1.035401947978737 1.0401116787983897 1.048016535504351 0.9814054648660488 0.9654298946581719 1.062563459713918 1.047789771229028 1.0046436399964365 1.0 22.16990608196322 4.740875749124848 24.638525726387527 1.023657954667756 0.8445697930629471 0.7514680051831335 0.030323248430208536 87.47028769508336 930819.8280123885 0.007714130282345738 0.051684088657973616 55065.01338480594 -4.740875749124848 -0.1790881616048089 KCGHTNNLRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCGHTNNLRPK 11 2 M0R2S1;P62987 M0R2S1 UBA52 Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40 0 ; 176.42 5.2044000000000005e-06 377910000.0 510560.0 507970.0 549510.0 467280.0 462780.0 587530.0 626740.0 543440.0 849440.0 663650.0 False True 507811.20168854896 524877.47437565 626876.2315734563 526437.600088702 521712.2898880384 546915.4339968552 596422.1918206965 583994.252332405 640106.8939128461 621295.2888206493 0.8173427528357453 0.8448116118375519 1.0089827540192697 0.8473226975340384 0.8397171188572176 0.8802826028747411 0.9599657402083843 0.9399624668665207 1.0302780423909301 1.0 19.24491958904014 1.8038782264618058 1.2643568379670929 1.008943027412781 0.874924277303955 0.5137466922023248 0.053048198226314264 0.3891836277817887 1.1624194324689825 0.04375727155594513 0.017742486815669374 63.661699233713705 -1.8038782264618058 -0.13401875010882613 KCLEELQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCLEELQK 8 1 P49721;A0A087WVV1 P49721 PSMB2 Proteasome subunit beta type-2 0 ; 166.09 0.00051389 1077150000.0 2221800.0 1977550.0 1918490.0 1617160.0 1404720.0 1996600.0 2145100.0 1740710.0 3158000.0 2061000.0 False True 2209838.0756651866 2043371.5562957798 2188596.716185986 1821892.2901888483 1583602.765572249 1858579.7414908537 2041333.3179222264 1870610.6193462773 2379753.215031981 1929465.2154891256 1.145311176343226 1.0590351875184123 1.1343022401319476 0.9442472844616651 0.8207469887819671 0.9632615952704272 1.0579788127482475 0.969496938493432 1.2333745101637947 1.0 20.879769604447866 3.74455858164948 24.812942975653925 0.9908475973874225 1.1074981045044445 0.2122856703718058 0.10011456643589527 705.080268697702 2916829.068466433 0.02656273831731117 0.04634848605564307 5553.395213895528 -3.74455858164948 0.11665050711702207 KCLELFSELAEDKENYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCLELFSELAEDKENYK 17 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 237.31 1.8323e-20 21881000000.0 1578590.0 1146030.0 1029450.0 857940.0 918660.0 1547720.0 1470680.0 1373560.0 2071930.0 1427250.0 False True 1570091.046837838 1184174.9157602356 1174387.6118601933 966555.1160334304 1035645.9056755825 1440729.7593409903 1399537.5898568188 1476062.0219963526 1561330.6139395875 1336161.6830697986 1.1750756414677244 0.8862512155262698 0.8789262757199163 0.7233818543672004 0.775090259508274 1.0782600471156674 1.0474313158280482 1.1047031513470258 1.16851922467382 1.0 20.349663161903788 2.715386143149031 22.116164279508077 1.0849804723860166 0.8780408745495927 0.39743943654833214 0.1178391216382244 184.9093877747308 176464.04889893607 0.03955541963648384 0.037332408979638194 519.2615234180214 -2.715386143149031 -0.2069395978364239 KCLELFSELAEDKENYKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KCLELFSELAEDKENYKK 18 3 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 217.36 3.7063e-19 1285600000.0 2071900.0 1652600.0 1535400.0 1553900.0 1377800.0 2464700.0 2450200.0 2237600.0 4299600.0 2310600.0 False True 2060745.1206097307 1707605.7919822044 1751570.9740639569 1750623.580675045 1553254.6631395905 2294321.0902797296 2331674.465327041 2404581.074302571 3240021.1916882535 2163135.5297958176 0.9526657448062205 0.7894122991652717 0.8097370460321046 0.8092990737571999 0.7180570249734677 1.0606460199450818 1.0779141820795355 1.1116183157185457 1.4978355017792553 1.0 21.04469262853939 2.3330767321266443 1.5345605818381733 1.2058893365008476 0.8143823691758729 0.6060227576349873 0.1354540780654059 0.257779497464104 1.2193550028097935 0.069042364487236 0.045641054065855224 215.31621266503618 -2.3330767321266443 -0.3915069673249747 KCLELFTELAEDKENYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCLELFTELAEDKENYK 17 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 270.95 7.5783e-36 15145500000.0 2014030.0 1421700.0 1306720.0 1120240.0 1207870.0 1827770.0 1704470.0 1748570.0 2849000.0 1930090.0 False True 2003186.6862597708 1469020.4250642015 1490694.8177861485 1262062.2691392049 1361685.0848936113 1701420.5620077804 1622018.2743922893 1879057.172458549 2146902.1246441193 1806910.0037668177 1.1086255995504923 0.8130014344941215 0.824996715209134 0.6984643764815165 0.7535987304597032 0.9416188733588688 0.897675186373926 1.0399284793051828 1.1881621775121776 1.0 20.785093221430042 1.8157009384367941 1.754418648139404 1.1000740061150267 0.8393416754905998 0.43114786484068124 0.11339568890201787 0.3117694309526869 1.8423054520854671 0.08016077412953113 0.034320032466783904 65.41855371518203 -1.8157009384367941 -0.2607323306244269 KCS(ph)LPAEEDSVLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCSLPAEEDSVLEK 14 1 E7EVA0;P27816-6;P27816 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK 251.41 2.2621e-19 1532370000.0 2529000.0 1816760.0 1875300.0 1668520.0 1747950.0 2583800.0 2512000.0 2431700.0 3838900.0 2659600.0 True False 2515384.1449983153 1877229.7583453883 2139325.9396001953 1879754.460922789 1970541.0715886531 2405187.98761097 2390484.963228114 2613165.8019224 2892854.533624535 2489862.051001882 1.0102504048311285 0.753949303171242 0.8592146455420546 0.7549632961257451 0.7914258024036864 0.9659924679936222 0.9600873117714371 1.0495223222792212 1.1618533374009596 1.0 21.24763438236106 2.2244453894880793 1.4495553909288093 1.0750091052877284 0.8288581287459094 0.5961134141874898 0.08223112301322845 0.2656590556108366 1.091002209310851 0.046862850352233254 0.02732176705955199 167.66614901054137 -2.2244453894880793 -0.24615097654181906 KCS(ph)QTQCPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KCSQTQCPR 9 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;H3BVD2;H3BRN3;P29590-12;P29590-13;P29590-11;H3BT57;H3BUJ5 P29590-2;P29590-12 PML Protein PML 1 KCS(0.999)QT(0.001)QCPR 79.492 0.016409 90900000.0 75269.0 70378.0 69068.0 61575.0 63247.0 69463.0 72019.0 56535.0 88814.0 70108.0 True False 74863.76006717207 72720.48918560066 78792.17405018197 69370.38868657306 71301.13055566099 64661.18630831364 68535.1658307028 60753.92877891313 66926.97974662774 65633.64741752137 1.14063080466844 1.1079757418172589 1.20048446414922 1.0569333172249413 1.0863502694294367 0.9851834973756446 1.0442077886472427 0.9256521794748593 1.0197053246314192 1.0 16.00214798886497 3.0446062324448384 1.1358409355304238 0.9821678307181291 1.1445848962535952 0.7007136179332827 0.04175495168842319 0.23816122709156098 0.6567116575265928 0.017038288109210268 0.02174138872829182 1108.1696007521857 -3.0446062324448384 0.1624170655354661 KCSPGS(ph)PTDPNATLSKDEAAVHQDGKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KCSPGSPTDPNATLSKDEAAVHQDGKPR 28 3 Q9P0K8-2;Q9P0K8 Q9P0K8-2 FOXJ2 Forkhead box protein J2 1 KCS(0.007)PGS(0.975)PT(0.018)DPNATLSKDEAAVHQDGKPR 168.09 3.7034e-12 124920000.0 128030.0 95046.0 89515.0 89448.0 95677.0 146880.0 131900.0 115940.0 209790.0 140390.0 True False 127340.70070547023 98209.54865347968 102117.93392167197 100772.10762868992 107860.89882799148 136726.53131832945 125519.49309306878 124592.03153139086 158090.06554197587 131430.1900060741 0.9688847037319595 0.7472373634165856 0.776974711190424 0.766734854632963 0.820670645176779 1.0402977528375374 0.9550278599404586 0.9479711740935077 1.2028443809954903 1.0 17.00393718060919 2.7578300405691807 9.211047384257798 1.0134029254563355 0.8071972727454613 0.5925657120639002 0.08772008857621945 0.23678365751868263 106.9608329594816 0.026835715836846137 0.02792021309245461 572.5719133772367 -2.7578300405691807 -0.2062056527108742 KCSTPEEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCSTPEEIK 9 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ; 101.93 0.00588 1469290000.0 1287790.0 1155960.0 1165290.0 914300.0 905130.0 1363310.0 1453300.0 1195530.0 1999110.0 1312240.0 False True 1280856.6817269204 1194435.4298074236 1329352.7031177462 1030050.2862547082 1020392.9403741732 1269067.5885865458 1382998.326854864 1284746.5193783324 1506456.1272015811 1228491.7197348124 1.0426254089880327 0.9722779654267916 1.0821014759502865 0.8384674228631019 0.8306062824700517 1.0330290128943582 1.1257693516675913 1.0457917613442795 1.22626477899808 1.0 20.228456703021173 2.483850678357833 16.060465123699576 1.0956056471856606 0.9527353846038894 0.365407307001682 0.09098017397383394 3.324364180897602 7937.063680079652 0.03139522717045077 0.0274790203199981 304.6847224868113 -2.483850678357833 -0.14287026258177116 KCSTPEEIKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KCSTPEEIKK 10 2 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 ; 135.6 7.8687e-05 2096900000.0 3457200.0 2695100.0 2661000.0 2433340.0 2344490.0 3571500.0 3616300.0 3271700.0 5366300.0 3491300.0 False True 3438586.8193310294 2784804.7742776484 3035645.670173369 2741400.5945040323 2643046.904619061 3324610.6114066816 3441365.753392446 3515850.867355974 4043847.269735951 3268482.244947692 1.0520439034497677 0.8520177151282692 0.9287630902281223 0.8387381019865093 0.8086465541321488 1.0171726086460318 1.0528941250061834 1.0756830246793159 1.2372247932467102 1.0 21.640189429511086 2.438776857787878 2.756608861021759 1.0961884128785995 0.892685753222404 0.5428545348063503 0.08432015062354292 0.20056834310922872 3.117731384024389 0.03132887092853745 0.02602293796957531 274.64826369362044 -2.438776857787878 -0.20350265965619552 KCTENDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 KCTENDIR 8 1 Q92879-4;G5EA30;Q92879-6;Q92879;Q92879-5;Q92879-3;Q92879-2 Q92879-4 CELF1 CUGBP Elav-like family member 1 0 ;; 88.948 0.022854 1075360000.0 3128460.0 3481600.0 3067900.0 3161780.0 3079610.0 3364600.0 3403200.0 3289610.0 4236900.0 3511000.0 False True 3111616.7189645795 3597482.9513283526 3499833.653335171 3562061.023815395 3471780.0792214465 3132013.1214164714 3238574.214513506 3535097.4025011067 3192772.766551303 3286924.974081674 0.9466649660398551 1.0944828311249923 1.0647744262288739 1.0837062153542432 1.0562395267909692 0.9528702803116207 0.9852899716454049 1.0755029184956584 0.9713555349535546 1.0 21.648307095789367 KDAENHEAQLK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDAENHEAQLK 11 1 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 0 ;; 165.58 1.3908e-05 1079410000.0 1416350.0 1175810.0 1123690.0 1033950.0 1121880.0 1403400.0 1379570.0 1313470.0 2041320.0 1549930.0 False True 1408724.52897128 1214946.1250578442 1281895.784711428 1164847.9639867174 1264744.7680962712 1306386.2612482545 1312834.928630818 1411487.8010655155 1538264.038286603 1451012.140438166 0.9708564730174372 0.837309414028034 0.8834493861121868 0.802783058475972 0.8716293495065816 0.9003275884747329 0.9047718430766387 0.9727608486027448 1.0601317490163034 1.0 20.468628159629358 1.679195127582204 1.7921967547014708 1.0312088973210962 0.8723712067239915 0.6636101638056926 0.043509971325176505 0.18354842621503015 1.202855702237866 0.032132972388891574 0.012283529877538437 47.77438747456896 -1.679195127582204 -0.15883769059710473 KDAPT(ph)SPASVASSSSTPSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDAPTSPASVASSSSTPSSK 20 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 KDAPT(0.5)S(0.5)PAS(0.001)VASSSSTPSSK 91.617 0.0010367 335780000.0 158220.0 146880.0 120450.0 111730.0 124850.0 164390.0 156790.0 157150.0 197130.0 159450.0 True False 157368.16109989473 151768.8120091651 137408.31302983194 125875.006544065 140748.90745607342 153026.1062324357 149205.46870403524 168877.33099153094 148549.95290666717 149273.76448798692 1.054225179084026 1.016714574927056 0.9205121442548609 0.8432493611708642 0.9428911231578168 1.025137315705271 0.9995424796568511 1.13132626869018 0.9951511132327744 1.0 17.187601102273508 2.4987281425427463 2.4087581874544246 1.0512080221959224 0.9515854410817763 0.22308865642053488 0.06522835469359124 0.38318022549563274 4.47869525814033 0.02696223127074991 0.022977756437735062 315.303028758794 -2.4987281425427463 -0.09962258111414601 KDCEVVMMIGLPGAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDCEVVMMIGLPGAGK 16 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ; 195.15 1.5758e-10 3213600000.0 6052600.0 5451300.0 5367600.0 5096500.0 4887500.0 6894000.0 6708500.0 6623100.0 9085200.0 7171000.0 False True 6020013.474107075 5632743.225119561 6123311.423984438 5741716.377444076 5509894.154517887 6417434.006730418 6383984.226041328 7117349.353420353 6846274.195442861 6713340.640598014 0.8967239704331197 0.8390373029868785 0.9121109372812911 0.8552696317421803 0.820738057174926 0.9559225950671799 0.9509400115100748 1.060179981093042 1.01980140171064 1.0 22.678599417165085 2.2753862346564366 1.789974319520082 1.0285450000050167 0.8667187483152836 0.7919579747489418 0.03480690209062604 0.14070620440491513 0.9089037545421993 0.016743240668350656 0.010963610052125147 188.53250356404547 -2.2753862346564366 -0.16182625168973308 KDDDS(ph)DDESQSSHTGK ddPTM_BT-474_Trastuzumab_2h_R1 10 KDDDSDDESQSSHTGK 16 1 O94874;O94874-3;O94874-2 O94874 UFL1 E3 UFM1-protein ligase 1 1 KDDDS(1)DDESQSSHTGK;KDDDS(0.999)DDES(0.001)QSSHTGK;KDDDS(0.996)DDES(0.004)QSSHTGK;KDDDS(0.999)DDES(0.001)QSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(0.972)DDES(0.028)QSSHTGK;KDDDS(0.993)DDES(0.007)QSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(0.989)DDES(0.004)QS(0.004)S(0.004)HTGK 326.41 1.9386999999999996e-60 10305424000.0 4936262.0 3835532.0 3226411.0 3103246.0 3748951.0 4745652.0 5016654.0 5086717.0 7536273.0 4377193.0 True False 4909685.71386227 3963195.363991942 3680661.6243328564 3496116.625417015 4226357.688076526 4417596.247303185 4773979.280540672 5466313.652365551 5679059.500034427 4097836.795236534 1.1981164597793297 0.9671432909672967 0.89819624554384 0.8531615093800272 1.0313631067468059 1.0780312804156453 1.1649998570197109 1.3339510394166458 1.385867662332468 1.0 21.96643109652556 2.289119286505782 1.8915164087427814 1.272110436574235 0.9769019757312912 0.41290757149728374 0.12912758526805249 0.2814488557359354 2.043583798288817 0.06143262297189544 0.041518756924914475 194.58944818699734 -2.289119286505782 -0.29520846084294383 KDDDS(ph)DDESQSSHTGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDDDSDDESQSSHTGKK 17 2 O94874;O94874-3;O94874-2 O94874 UFL1 E3 UFM1-protein ligase 1 1 KDDDS(1)DDESQSSHTGKK;KDDDS(1)DDESQSSHTGKK 210.74 1.6196e-12 254020000.0 293134.0 214414.0 174165.0 185622.0 238584.0 319653.0 320479.0 340541.0 571770.0 297964.0 True False 291555.7991142488 221550.64037400007 198685.91813068208 209121.7261677476 268966.2582018404 297556.14049222425 304976.2064213308 365953.89865215996 430864.9448254709 278947.68242018507 1.0451988580248242 0.7942372506980482 0.7122694707726487 0.7496808159629837 0.964217576099774 1.066709491581324 1.0933096979882357 1.3119087259556992 1.5446084408632925 1.0 18.08963503953567 2.3980630671373255 1.2604103045310637 1.306042219834455 0.8225787503934066 0.5877509514087995 0.15598273694463485 0.29033481431605973 0.9220350002277695 0.08807603643439485 0.0590367418386092 250.0708481839688 -2.3980630671373255 -0.48346346944104845 KDDEDEEEEEEVSDS(ph) ddPTM_BT-474_Trastuzumab_2h_R1 1 KDDEDEEEEEEVSDS 15 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 KDDEDEEEEEEVS(0.066)DS(0.934) 235.22 1.1944e-17 297610000.0 510720.0 353760.0 319450.0 265550.0 311100.0 469740.0 398200.0 403500.0 659250.0 467100.0 True False 507970.34026632586 365534.6877475645 364425.7832908244 299168.6027725453 350716.74096583406 437267.9794490202 378937.54472827853 433611.21893148345 496786.67099741404 437289.27809557086 1.1616345648321784 0.8359104740447714 0.8333746138892938 0.6841434669412615 0.8020245602481566 0.999951293920026 0.8665603382241186 0.9915889564452491 1.1360595740214785 1.0 18.73822844982144 1.579911590750258 3.169127605462554 1.0693102265714496 0.8727786586195542 0.26638756886454273 0.12374324654662247 0.267535912298964 6.200006897623407 0.08352098400316366 0.03351820643057776 38.011200911049905 -1.579911590750258 -0.19653156795189541 KDDEDSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 KDDEDSFR 8 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ;;; 138.66 0.0011157 2592680000.0 2851010.0 2712310.0 2429450.0 2217640.0 2229860.0 2803220.0 2897170.0 2689880.0 3683270.0 2848710.0 False True 2835660.4789369884 2802587.598723983 2771495.442842046 2498392.9966202467 2513819.4535842985 2609439.9994700947 2757022.818835829 2890612.5045338743 2775577.461789376 2666902.8888966674 1.0632784908452884 1.0508772593078746 1.0392187336032508 0.9368143875886926 0.9425987965479682 0.9784533251413793 1.0337919803208302 1.0838836751681493 1.040749355120939 1.0 21.346733861682846 -0.638982883468391 7.938834408262451 0.9999967336949981 1.0199266018911894 0.01354721904748668 0.04746906482134034 0.0 0.0 0.052708858647781666 0.012423597126149873 0.22962391463274087 0.638982883468391 0.019929868196191358 KDDEENYLDLFSHK ddPTM_BT-474_Trastuzumab_2h_R1 6 KDDEENYLDLFSHK 14 1 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 0 ;;;;; 245.48 7.5871e-18 17385490000.0 17410090.0 14051830.0 13212210.0 11686560.0 11747840.0 18209540.0 17204310.0 16134250.0 26541070.0 16930810.0 False True 17316356.00988283 14519536.667039396 15072374.325411983 13166077.297749994 13243857.789096957 16950757.360446446 16372071.798453463 17338269.663061447 20000378.930617154 15850271.210604308 1.0924958809725394 0.9160434212207921 0.9509221719391219 0.8306531240261361 0.835560326578918 1.069430114804968 1.0329206094278094 1.0938784221850806 1.2618319689846251 1.0 23.918004190434033 2.60513101416369 5.688219662467667 1.0953864980608508 0.9212526880896514 0.44560509677196436 0.09308816784982073 0.2201846201838995 9.297710391742413 0.03101739425490477 0.029112198396472874 402.8385408073269 -2.60513101416369 -0.17413380997119932 KDDEVQVVR ddPTM_BT-474_Trastuzumab_2h_R1 6 KDDEVQVVR 9 1 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ;;;;; 146.11 0.00015325 8075500000.0 8074200.0 7407650.0 6990616.0 7241926.0 6674352.0 8322390.0 8591710.0 6026920.0 11302180.0 8436000.0 False True 8030729.404327962 7654209.152231014 7974833.96927647 8158753.089068591 7524291.165216333 7747082.768098807 8176096.163780497 6476679.37447964 8516909.180452866 7897607.257577029 1.0168560099798853 0.969180778758972 1.0097784948251698 1.0330664494921569 0.9527304815008959 0.9809404944347153 1.035262440524158 0.8200812174175743 1.0784163991292013 1.0 22.9129841947023 KDDGDAAMGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 KDDGDAAMGSR 11 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ;;; 151.66 5.341e-05 909900000.0 1154310.0 1143720.0 1032070.0 962500.0 1014720.0 1243550.0 1240580.0 1142290.0 1581660.0 1258290.0 False True 1148095.3232158977 1181788.0288066594 1177376.485086746 1084352.4013126525 1143938.5772833542 1157586.315501827 1180568.4059241773 1227533.4802310898 1191881.0861581645 1177984.854923734 0.9746265568840684 1.0032285422575926 0.9994835503746546 0.920514722052905 0.9710978647152607 0.9826835299820322 1.002193195430013 1.0420621921413105 1.0117966128141183 1.0 20.167889560218455 2.1365025045530612 3.0109363214586096 1.022520263822841 0.9744865798730303 0.40407038339924106 0.023374896630073683 0.24318610448437605 4.398792558930875 0.010658519873279405 0.007192341323433496 136.9312285119187 -2.1365025045530612 -0.04803368394981067 KDDPVTNLNNAFEVAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDDPVTNLNNAFEVAEK 17 1 O43707;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 ;; 224.19 4.4881e-15 1070240000.0 1279450.0 993690.0 1002670.0 843090.0 772740.0 1164800.0 1147980.0 1158050.0 1786850.0 1233490.0 False True 1272561.583360259 1026764.3709517102 1143837.2206361268 949825.1075560349 871143.8586111824 1084280.1176442672 1092447.8216905291 1244469.5714587471 1346504.7600632997 1154767.6121560815 1.1020066461547555 0.8891523802218744 0.9905345530954524 0.822524893803182 0.7543888912719491 0.9389595847945491 0.9460326131340017 1.077679663300551 1.1660395960960692 1.0 20.1391711192145 1.7899591990256196 2.8452814037775127 1.0958729874042683 0.9084222637746221 0.37409102320744336 0.09528906523574514 0.25024182540713824 3.8908269397121105 0.05572871621274747 0.02690622934204916 61.65370768907396 -1.7899591990256196 -0.1874507236296462 KDDRVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 KDDRVEER 8 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 93.111 0.0063560000000000005 88242000.0 91003.0 99236.0 88012.0 81872.0 92532.0 94982.0 110290.0 102640.0 149520.0 105430.0 False True 90513.04995938376 102539.0102705712 100403.32458598226 92236.98680547468 104315.40171986683 88416.11790357824 104954.85135128541 110299.51799535936 112672.79946535229 98701.36713683567 0.917039475592066 1.0388813574224882 1.0172435043051336 0.934505665738155 1.056878995153614 0.8957942576519901 1.063357625085174 1.1175074995916163 1.141552571497284 1.0 16.59078244749225 2.015825551597428 23.82036632575758 1.0971654627634502 0.9828204219805735 0.41759870610088046 0.059893732756096135 114.16844066967847 171843.30204277558 0.02091524209008939 0.015440923633872472 103.71117427174063 -2.015825551597428 -0.11434504078287666 KDDS(ph)DDDGGGWITPSNIK ddPTM_BT-474_Trastuzumab_2h_R1 6 KDDSDDDGGGWITPSNIK 18 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK 254.83 9.315499999999999e-31 5491150000.0 8716760.0 5829080.0 5038220.0 4746310.0 5208140.0 8254790.0 7872160.0 7781880.0 13029990.0 8090140.0 True False 8669829.932683086 6023097.404046734 5747557.583006715 5347192.359349869 5871365.757935714 7684155.796985516 7491353.5462284405 8362603.401185965 9818923.557420699 7573820.33888267 1.1447102710073138 0.7952522154671672 0.7588716560253957 0.7060099289520136 0.7752185152575046 1.014568005731058 0.9891115990392776 1.104145995945246 1.296429426377077 1.0 22.85258976830235 2.2415397488430298 1.5036866724511377 1.138902808182801 0.8266394825108498 0.45575133816354796 0.13597722951694735 0.3494852549029614 1.5562177306319689 0.07827137999254508 0.04688901149530874 174.39729674503423 -2.2415397488430298 -0.31226332567195114 KDDS(ph)HS(ph)AEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 KDDS(1)HS(1)AEDS(1)EDEKEDHK;KDDS(1)HS(1)AEDS(1)EDEKEDHK 130.6 1.3831e-05 1577830000.0 2010040.0 803710.0 633280.0 538236.0 633080.0 1274560.0 984490.0 1023600.0 2210450.0 890390.0 True False 1999218.1679764383 830461.0014970446 722440.3194315633 606376.6224134194 713698.9854408571 1186452.6671915168 936866.4575829804 1099986.2297354823 1665714.2160124914 833564.5478987681 2.3983963485683564 0.9962767773538992 0.8666879142745161 0.7274501104227151 0.856201223096561 1.423348282004437 1.1239279068964887 1.3196173379833682 1.99830261521005 1.0 19.668934394497725 1.4876187556405867 5.9021333962468585 1.5495216168934858 1.1608104383418747 0.04746829866847402 0.5002378398627594 0.35304735141456517 28.779376492720722 0.28839819970101266 0.12525905176046917 30.733976554983535 -1.4876187556405867 -0.3887111785516111 KDDS(ph)HS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR 90.907 0.0013754 3366240000.0 950061.0 670260.0 408840.0 420129.0 461399.0 915413.0 742306.0 664377.0 1749680.0 666453.0 True False 944945.9771376995 692569.1989192739 466401.1182990154 473317.2883232032 520155.4277238668 852132.6539604152 706397.822895705 713956.1853780473 1318494.8085108188 623919.3989608808 1.5145321314122928 1.1100299174424249 0.7475342473335379 0.758619284977353 0.833690102584036 1.3657736165594734 1.1321940367172258 1.1443083618927703 2.113245413921626 1.0 19.251000140976103 1.424751588860955 13.072913684620232 1.5811563083671707 1.0583746519804649 0.2422520742718427 0.34183704647573765 1.2017942313657684 297.09703090619485 0.208584141961999 0.08187367557283487 26.592035927352722 -1.424751588860955 -0.5227816563867058 KDDS(ph)HSAEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 KDDS(0.5)HS(0.5)AEDS(1)EDEKEDHK 154.86 1.232e-08 2347800000.0 445650.0 181510.0 155390.0 122660.0 142900.0 290490.0 227300.0 235770.0 513360.0 221570.0 True False 443250.6699163694 187551.45062488795 177267.5613259073 138188.74342338688 161097.4679653415 270409.110039907 216304.630629678 253364.3546158014 386849.30667157035 207429.2129043793 2.1368767865917664 0.90417086387608 0.8545930384821162 0.6661971160594874 0.7766382840183855 1.3036211546758372 1.042787694177821 1.2214497228632752 1.8649702289035832 1.0 17.66225956214827 1.4807338560768626 5.5988622882824055 1.468330118050526 1.0653141463727642 0.07917622073446928 0.4357037632256164 0.3190117175712902 22.880213915475103 0.25714167518413217 0.10900082700549898 30.250590462086713 -1.4807338560768626 -0.4030159716777617 KDDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 7 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 KDDS(0.066)HS(0.934)AEDS(1)EDEKEDHK;KDDS(0.089)HS(0.911)AEDS(1)EDEKEDHK;KDDS(0.115)HS(0.885)AEDS(1)EDEKEDHK;KDDS(0.143)HS(0.857)AEDS(1)EDEKEDHK;KDDS(0.05)HS(0.95)AEDS(1)EDEKEDHK;KDDS(0.029)HS(0.971)AEDS(1)EDEKEDHK;KDDS(0.075)HS(0.925)AEDS(1)EDEKEDHK 176.44 4.569199999999999e-13 20628910000.0 6368463.0 2774457.0 2458258.0 1773488.0 2191609.0 3844687.0 3573868.0 3377803.0 7006106.0 3280721.0 True False 6334175.90281076 2866803.1240503285 2804359.358838422 1998011.398960177 2470697.415465737 3578912.8371097078 3400986.3513384294 3629871.8119960916 5279545.053310604 3071342.577013439 2.062347570804064 0.9334038949305343 0.9130727974882469 0.6505335529529354 0.8044356347471447 1.1652600605009122 1.1073288850264091 1.1818518191890415 1.7189697732919171 1.0 21.550438008565344 1.5047644483383547 4.525452546089709 1.386221597341329 1.0567906302855452 0.05960899320242807 0.3943225837342844 0.4016650041726023 17.854918035468376 0.24358217218807354 0.10064271840913834 31.971605706063812 -1.5047644483383547 -0.3294309670557838 KDDSHS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_BT-474_Trastuzumab_2h_R1 10 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 KDDS(0.023)HS(0.977)AEDS(1)EDEKEDHKNVR;KDDS(0.13)HS(0.87)AEDS(1)EDEKEDHKNVR;KDDS(0.078)HS(0.922)AEDS(1)EDEKEDHKNVR;KDDSHS(1)AEDS(1)EDEKEDHKNVR;KDDS(0.043)HS(0.957)AEDS(1)EDEKEDHKNVR;KDDS(0.011)HS(0.989)AEDS(1)EDEKEDHKNVR;KDDS(0.075)HS(0.925)AEDS(1)EDEKEDHKNVR;KDDS(0.027)HS(0.973)AEDS(1)EDEKEDHKNVR;KDDS(0.111)HS(0.889)AEDS(1)EDEKEDHKNVR;KDDS(0.098)HS(0.902)AEDS(1)EDEKEDHKNVR 177.14 3.1517e-17 17170437000.0 4466118.0 2669441.0 1871169.0 2097287.0 2247497.0 3795876.0 3970696.0 3336597.0 8361072.0 3361243.0 True False 4442072.9169203555 2758291.729973838 2134613.3307074914 2362803.3191603175 2533702.420991608 3533476.026650976 3778618.2649482545 3585590.8110362617 6300597.838224796 3146725.5940350853 1.4116492792827957 0.8765593463892879 0.6783601769260885 0.750876823717719 0.8051869618992135 1.1229056748224289 1.2008095882624723 1.1394672664922187 2.0022711386617797 1.0 21.58541994516879 2.0170114532085663 1.3570463778864879 1.4303320069732173 0.8932337479850587 0.3085595355121993 0.30777322057332934 0.5033143531035602 1.7266669220677573 0.21144386992021436 0.10080036226992495 103.99475909521037 -2.0170114532085663 -0.5370982589881586 KDDSHSAEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 7 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHS(0.001)AEDS(0.999)EDEKEDHK 339.22 1.3340999999999993e-75 4861110000.0 4458858.0 2041297.0 1665969.0 1394114.0 1488588.0 3063409.0 2874341.0 2969729.0 5697860.0 2642860.0 True False 4434852.003953699 2109240.3366549076 1900522.954337865 1570608.68945827 1678150.8582476696 2851642.7463191156 2735298.1447810777 3191345.2579583055 4293698.750412332 2474190.4121337193 1.7924457156590154 0.8524971749591083 0.7681393255011733 0.6347970155230662 0.6782626147194741 1.1525558955908672 1.1055325941636729 1.2898543468229344 1.7353954365660504 1.0 21.238525102811515 2.011152081310325 1.7344715847218743 1.3782267994478203 0.9257475733911052 0.17174427810864024 0.35220455017479313 0.5666457491870888 3.1874241001823096 0.2190510362101447 0.11002312351859034 102.60111520982862 -2.011152081310325 -0.4524792260567151 KDDSHSAEDS(ph)EDEKEDHKNVR ddPTM_BT-474_Trastuzumab_2h_R1 9 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDS(0.007)HS(0.018)AEDS(0.975)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR 296.35 2.791e-55 6240834000.0 2453914.0 1409761.0 1310857.5 1133465.0 1331346.0 2361688.0 2233598.0 2034907.0 5117952.0 2342242.0 True False 2440702.3996794736 1456684.0426664788 1495414.8418223553 1276961.5527832147 1500885.0215940222 2198430.067375562 2125550.3315670346 2186762.0933883754 3856701.3066432476 2192758.1102657374 1.11307416365396 0.6643158841127009 0.681978935488296 0.5823540438887997 0.6844735926718939 1.0025866770635898 0.9693501173777175 0.9972655365636133 1.758835727747398 1.0 21.06431524208922 1.808454715556887 1.3459132514590273 1.3286739122608369 0.7524442238754692 0.4474431901779604 0.2405937893505914 0.36696395736301873 1.248848386310631 0.1836354331860582 0.07477724458923801 64.33609774197333 -1.808454715556887 -0.5762296883853677 KDDTDDEIAK ddPTM_BT-474_Trastuzumab_2h_R1 5 KDDTDDEIAK 10 1 P27824;P27824-2;H0Y9Q7;D6RDP7;D6RAU8;D6RB85;D6RAQ8 P27824 CANX Calnexin 0 ;;;; 146.36 4.6187e-05 4178280000.0 7103820.0 5837720.0 6108280.0 3857930.0 5519030.0 9363260.0 7039620.0 6329280.0 11414790.0 6976670.0 False True 7065573.822428605 6032024.981223734 6968272.729878463 4346343.542437523 6221845.756646309 8715999.874943221 6699086.686640097 6801603.013032611 8601767.954849573 6531412.947572313 1.081783356701529 0.9235405921571382 1.0668859534396042 0.6654522654325558 0.9526033350806477 1.3344738642169158 1.025671893725554 1.0413677817692917 1.316984245812661 1.0 22.63896369462565 2.9661053829843005 24.41991732850315 1.1292249397147034 0.9263417795710727 0.31799990993035065 0.14983584703421143 582.6975945176758 419813.79063096107 0.04514872860097548 0.047917668835837236 924.9225822167909 -2.9661053829843005 -0.20288316014363073 KDDVS(ph)PVMQFSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDDVSPVMQFSSK 13 1 Q8IZE3;Q8IZE3-2 Q8IZE3 SCYL3 Protein-associating with the carboxyl-terminal domain of ezrin 1 KDDVS(1)PVMQFSSK;KDDVS(1)PVMQFSSK;KDDVS(1)PVMQFSSK 195.78 9.0079e-08 5041730000.0 4456840.0 3507220.0 2964380.0 2949850.0 2574980.0 4043430.0 3964450.0 3890030.0 5670400.0 4000840.0 True False 4432844.868641471 3623955.697540735 3381738.937147135 3323300.707545063 2902888.4398977975 3763917.2013104046 3772674.407830295 4180323.791772097 4273005.899467177 3745502.965908543 1.1835112424123257 0.9675484789428475 0.9028797915600715 0.8872775533202476 0.7750330106049312 1.0049163585156566 1.0072544174091078 1.11609143813829 1.1408363411696505 1.0 21.83672803372231 2.0863954754924743 2.3428775947813887 1.0944458615281834 0.9387588975953176 0.24117822340038697 0.10338124196223764 0.393126386116068 4.195335870572435 0.0539154274587324 0.03200424254331251 122.01001358849264 -2.0863954754924743 -0.15568696393286574 KDEAGENYSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDEAGENYSK 10 1 Q96SI9;Q96SI9-2;Q5JPA5 Q96SI9 STRBP;DKFZp434P151 Spermatid perinuclear RNA-binding protein 0 ; 131.69 0.0003903 221550000.0 1089170.0 974790.0 831660.0 830530.0 883670.0 959110.0 1121750.0 1036720.0 1418510.0 1155910.0 False True 1083306.0297381636 1007235.2958770008 948750.4990816937 935675.0128438399 996200.1365775592 892808.9832020884 1067486.666998861 1114085.310757491 1068937.21756017 1082138.834175659 1.0010786005692085 0.9307819515083593 0.8767363938144068 0.864653391315181 0.9205844066546549 0.825041071446441 0.9864599931967512 1.0295216062605939 0.9878004409429167 1.0 20.045454172488554 2.0622698888116204 9.274657820632582 1.0088001090961936 0.9023324907610429 0.5383939079787978 0.04460078895976104 0.24214178568880215 33.77396920862698 0.017033539440502503 0.012567850912120643 115.41702848402055 -2.0622698888116204 -0.10646761833515062 KDEDLFR ddPTM_BT-474_Trastuzumab_2h_R1 7 KDEDLFR 7 1 O75531 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed 0 ;;;;;; 134.91 0.0050165 18748070000.0 6409990.0 6655660.0 6006070.0 5892350.0 5678070.0 6904060.0 7051360.0 6472770.0 9085880.0 7288830.0 False True 6375479.326056838 6877189.619668564 6851672.450303709 6638320.905843749 6401138.557942386 6426798.582609104 6710258.777988927 6955800.965460074 6846786.618554398 6823650.6291186875 0.9343208895910702 1.0078460919909071 1.0041065732564682 0.9728400920052855 0.9380812274630081 0.9418416815163294 0.9833825239167607 1.019366515597598 1.0033905589094763 1.0 22.70211235189172 1.9483918673598473 5.819081889152759 1.0081994589946421 0.96856505105204 0.3637932918482667 0.02421056153483084 0.2578967207909555 19.968420600633987 0.01145235945237203 0.007073746893647631 88.79568612046661 -1.9483918673598473 -0.03963440794260209 KDEEDEHGDKKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEEDEHGDKKPK 13 3 Q9BUQ8;F8VVA2;F8W1J5 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 77.527 0.015412 395460000.0 344550.0 243080.0 219870.0 217590.0 195320.0 334060.0 333790.0 277130.0 564790.0 304000.0 False True 342694.98108310363 251170.77085503683 250825.78485570062 245136.8716899948 220192.84424765914 310967.21849265485 317643.3024983732 297810.84783762594 425605.072298263 284598.4597325061 1.2041350519085818 0.8825443788104549 0.8813321937562545 0.861342931793794 0.7736965423306165 1.092652499893825 1.1161104062085436 1.0464246648331765 1.49545810155926 1.0 18.118568328352197 2.5563231840150205 5.985460663637657 1.1480645810878292 0.9132731434405137 0.3382024546606104 0.16212692926599953 0.2732906986219277 16.290826843920453 0.05239139375961576 0.048976605382233036 360.0171453859166 -2.5563231840150205 -0.23479143764731547 KDEEGQKEEDKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEEGQKEEDKPR 13 3 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 92.935 0.0025605 218530000.0 75493.0 65619.0 63520.0 54153.0 63848.0 70929.0 70997.0 62001.0 109180.0 73613.0 False True 75086.5540760609 67803.08874747682 72463.06387426259 61008.76424756781 71978.66434325492 66025.8451789065 67562.60387512205 66627.82945469875 82274.05193704617 68914.95531674 1.0895538382192316 0.9838661062152195 1.0514853204390124 0.8852761199244119 1.044456373982016 0.9580771673644006 0.9803765171811777 0.9668123435395206 1.1938490209985109 1.0 16.072529477428418 1.2677307053651075 24.999660674112288 1.0969248338211843 0.9913642228606431 0.25602884234488055 0.06928617403055493 212.83528815732106 182406.7044785365 0.04217840878047506 0.01539709989608349 18.52382653255521 -1.2677307053651075 -0.10556061096054126 KDEEHILSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDEEHILSGR 10 1 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-3;Q8IXQ4-2 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 0 ; 103.35 0.0018347 726340000.0 870090.0 944670.0 890630.0 839260.0 865140.0 1066990.0 1021340.0 889970.0 1355430.0 1067190.0 False True 865405.5321160859 976112.7698849262 1016022.9625052653 945510.2299487327 975310.4509134745 993231.4927242934 971933.8823023097 956384.0805760901 1021402.4383314766 999081.0205326746 0.8662015535583714 0.9770106225864419 1.0169575255904248 0.9463799336760698 0.976207565622129 0.994145091651063 0.9728278911595268 0.9572637863405512 1.0223419495917367 1.0 19.930242152635742 4.736357908116772 5.886184396307315 0.9818465543384145 0.8629775457071338 0.7026954369330047 0.023089230792026502 0.07016172989487103 11.262007132319782 0.005340444874969577 0.033562713582493534 54495.15699981593 -4.736357908116772 -0.11886900863128069 KDEEKEDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEEKEDPK 9 2 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W543;F8W118;F8VUX1;H0YHC3;H0YH88;F8W020;P55209-3;F8VXI6 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 60.518 0.053542999999999986 362940000.0 1065200.0 583250.0 482740.0 432540.0 458740.0 735170.0 917810.0 869380.0 1705600.0 898510.0 False True 1059465.0815548445 602663.1236679293 550705.5959487008 487299.51965067454 517157.8198349943 684349.4283040313 873412.0239253163 934257.55022219 1285277.7338690783 841166.3225468867 1.2595191380784145 0.7164613079648547 0.6546928724883709 0.5793141101693504 0.6148104197385623 0.8135720724433609 1.038334513061336 1.1106692281657702 1.5279709843559943 1.0 19.682031565035274 1.9914762271188695 1.8068010114079973 1.2459129016864223 0.744597226582438 0.4565147283089416 0.21778166711885788 0.30472454303302576 1.8538560418307177 0.13377717298216157 0.06683773028326068 98.05646376450582 -1.9914762271188695 -0.5013156751039843 KDEELDPMDPSSYSDAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDEELDPMDPSSYSDAPR 18 1 O60828-2;O60828;O60828-5;O60828-4;H7C053 O60828-2 PQBP1 Polyglutamine-binding protein 1 0 ; 104.06 0.00083019 812580000.0 1346390.0 1231160.0 1113110.0 1148300.0 1145820.0 1438310.0 1374540.0 1281620.0 1905120.0 1400630.0 False True 1339141.1858379932 1272138.4163480643 1269826.2126744378 1293674.6622621499 1291733.3851927738 1338883.0151175547 1308048.2489472833 1377260.9923344925 1435628.7033001052 1311240.5942603268 1.0212780108393495 0.9701792500297628 0.968415879002548 0.986603578263922 0.9851230894216197 1.0210811204123993 0.9975654007914204 1.050349568464518 1.094862918052004 1.0 20.322500993480272 1.9299114717313515 1.6934020998966637 1.0546410356925011 0.9875683043102091 0.4458728927390242 0.027666677983281367 0.2933005522361806 1.5665313109723995 0.01759859136358915 0.00819699516437388 85.09645566114996 -1.9299114717313515 -0.06707273138229197 KDEESGGGSNPFQHLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KDEESGGGSNPFQHLEK 17 1 Q9Y678;D6RG17 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ;;; 278.07 5.3017999999999996e-36 1232930000.0 2269180.0 2038120.0 1938420.0 1752480.0 1848040.0 2591250.0 2488500.0 2343050.0 3473040.0 2561050.0 False True 2256962.987009601 2105957.592130442 2211332.68695132 1974343.7883141772 2083376.9398087442 2412122.986646384 2368121.748006834 2517900.288766825 2617155.8283517063 2397601.5963747846 0.9413419604083383 0.8783601059136291 0.9223103163990605 0.8234661635608765 0.8689420890271539 1.0060566318831101 0.9877044424676208 1.050174596385794 1.0915724415219323 1.0 21.19316051886605 2.6268216315516795 3.3615382385985737 1.033492567485483 0.8847011547299963 0.7572872878886223 0.03978287075121953 0.12481699407618453 2.6430225251337456 0.014038370845299238 0.013145019036258703 423.4690079951146 -2.6268216315516795 -0.14879141275548657 KDEESGSGSNPFQHLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEESGSGSNPFQHLEK 17 1 Q9UBF2;Q9UBF2-2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 115.34 0.00020746 279700000.0 208060.0 178740.0 191280.0 187550.0 163370.0 227250.0 226430.0 218350.0 330390.0 215310.0 False True 206939.82807763893 184689.2528493884 218210.56136443515 211293.81077006506 184174.2011301456 211540.7423889592 215476.71585340064 234644.38575883405 248969.8114991822 201568.73146383493 1.0266464772328423 0.9162594391904728 1.0825615648803448 1.0482469638797869 0.9137042228357218 1.0494720131079132 1.0689987196355455 1.1640911963616414 1.2351608788283308 1.0 17.620912331226922 2.085042827223813 2.2825864274594085 1.1479340287180815 1.001064661033438 0.36434060261708967 0.07489013878499408 0.28616517513744677 2.8904134463684397 0.03681574855498166 0.0216328102179059 121.63059387079446 -2.085042827223813 -0.14686936768464354 KDEET(ph)EES(ph)EYDS(ph)EHENSEPVTNIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEETEESEYDSEHENSEPVTNIR 24 1 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;E7EV93 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 3 KDEET(0.994)EES(0.993)EY(0.014)DS(0.999)EHENS(0.001)EPVTNIR 92.956 0.013615 232030000.0 378850.0 317280.0 232750.0 214750.0 254660.0 405170.0 356080.0 354020.0 527350.0 350250.0 True False 376810.31369419186 327840.4730001894 265519.1769007336 241937.3279811866 287089.44151192345 377161.55156758946 338855.0500423037 380438.7700771347 397391.65862796624 327896.74513588846 1.149173693499252 0.9998283845858984 0.8097646007150695 0.7378460798106484 0.8755483113836539 1.150244877884605 1.03341998683724 1.1602395440658355 1.2119414557264891 1.0 18.322882055339427 2.7393007504983706 24.998167148957055 1.1176814730279705 0.9035512321445227 0.4078127201861227 0.11804381419414864 68.06507285144764 2298940.866268855 0.039652674845216555 0.039831916240577275 548.6567801972234 -2.7393007504983706 -0.2141302408834478 KDEETEESEYDS(ph)EHENSEPVTNIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEETEESEYDSEHENSEPVTNIR 24 1 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;E7EV93 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 KDEETEES(0.002)EY(0.001)DS(0.997)EHENSEPVTNIR 77.149 0.010313 170960000.0 168430.0 172480.0 150070.0 146340.0 138540.0 165710.0 163090.0 155320.0 192810.0 150420.0 True False 167523.19159433237 178220.8925336384 171198.55156817625 164866.62899542158 156182.2478090863 154254.85773938164 155200.71363569793 166910.76709897895 145294.55902163283 140820.06681895885 1.1896258493450624 1.2655930121291792 1.2157255385219536 1.1707609058826642 1.109090851447169 1.0954039521774608 1.1021207214397017 1.1852768633717725 1.0317745354319885 1.0 17.10349340668898 7.999999999995966 0.07933445753416615 0.8684936365446314 1.8703927253269628 0.6897230323439998 0.04405036093591202 120.90389613029508 0.6992213325208364 1.343645591811865 13.294348540327187 99999999.9990711 -7.999999999995966 1.0018990887823314 KDELQSER ddPTM_BT-474_Trastuzumab_2h_R1 1 KDELQSER 8 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 84.213 0.028239 174610000.0 129370.0 132050.0 128070.0 104500.0 114620.0 138040.0 136380.0 121180.0 163290.0 124670.0 False True 128673.48629435833 136445.2044240893 146101.14279560454 117729.68928537366 129216.17759403399 128497.61971120781 129782.7783778067 130223.06693957179 123049.3674738988 116713.45386464322 1.1024734684279465 1.1690614912512973 1.2517934990172022 1.0087070974860277 1.107123243425652 1.1009666448585362 1.1119778747043203 1.1157502638093133 1.0542860604279911 1.0 16.83261134829311 -4.999999984086429 0.0761074148350972 0.5868386473224442 1.2493569282019494 0.338835435575938 0.05670616493369328 316.07742328651346 1.7157331092098371 22.02780147867706 2.3057847924436126 1.0000000366423518e-05 4.999999984086429 0.6625182808795053 KDELSDWSLAGEDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDELSDWSLAGEDDR 15 1 B4DXZ6;P51114;P51114-3;H7C4S4;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 102.89 0.0024298 308590000.0 228050.0 186960.0 173690.0 182660.0 186400.0 240520.0 209970.0 217700.0 221860.0 217260.0 False True 226822.20413873685 193182.85058029328 198144.04225945592 205784.73727144804 210136.9351206411 223893.41852317937 199812.94893670682 233945.87945820062 167185.57577168944 203394.28079435616 1.1151847694678678 0.9497948999638428 0.9741868920089816 1.0117528205205966 1.0331506584155243 1.1007852219283838 0.9823921703026139 1.1502087401107113 0.8219777622003251 1.0 17.63391958733122 4.770312356015692 21.998015613999286 1.015933337966617 1.1151856491870267 0.12192485343184656 0.08405852046883405 5433.8705814551395 3764327.1547520254 0.019294987197445636 1.992728065563608 58926.73195392618 -4.770312356015692 0.09925231122040978 KDELSDWSLAGEDDRDS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114;P51114-3;H7C4S4;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 1 KDELSDWSLAGEDDRDS(1)R 108.4 0.00020467 51912000.0 81897.0 49309.0 38986.0 42712.0 38269.0 51367.0 47722.0 52107.0 76043.0 58883.0 True False 81456.07565161216 50950.22025708004 44474.8899276133 48119.33482063998 43142.33031186599 47816.120194911666 45413.50454425641 55995.48893398467 57303.221573995244 55125.0365277274 1.4776602571617432 0.9242664216912133 0.8068001896967965 0.8729125249003035 0.7826267886492153 0.8674120364684127 0.8238272009382491 1.0157905093780653 1.039513534746997 1.0 15.750420086198814 4.736890922361907 5.3153773019328545 0.8956663194132984 1.5008112019795754 0.8021322064810231 0.08555232357312831 0.06601554433019495 6.708450823107369 0.02182049797316819 0.14603779058788466 54562.08054624892 -4.736890922361907 0.605144882566277 KDELSDWSLAGEDDRDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114;P51114-3;H7C4S4;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ;; 205.68 5.263e-16 6992650000.0 6315950.0 6515660.0 6190510.0 5751720.0 5810110.0 7781030.0 7353160.0 6738010.0 8864590.0 7828240.0 False True 6281945.626968007 6732529.8043003585 7062079.99912249 6479887.162262869 6549993.06927999 7243145.71067444 6997459.559000971 7240834.521121502 6680030.573920325 7328635.021106548 0.857178125104598 0.9186608126766581 0.9636282853196569 0.884187456954907 0.8937534821171936 0.9883348931709796 0.9548107579171581 0.9880195289119762 0.9114972371637782 1.0 22.805113086693066 2.742618372347427 24.88367681104917 0.9683473455853465 0.9065945007902574 0.47346057741304914 0.03422127507235563 310.6862650668498 1905247.9441431123 0.010492943485960539 0.010766165958223974 552.8640773713355 -2.742618372347427 -0.061752844795089135 KDELYLNLVLEYVPETVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDELYLNLVLEYVPETVYR 19 1 P49840;A8MT37;M0QYV0 P49840 GSK3A Glycogen synthase kinase-3 alpha 0 56.407 0.074441 0.0 10214.0 12719.0 9643.0 9403.4 8421.7 10698.0 12407.0 11319.0 11530.0 11556.0 False True 10159.00895888208 13142.344226202138 11000.65058154145 10593.869475847681 9494.153575673316 9958.472440383217 11806.826010657342 12163.681256717382 8688.585994084478 10818.48618641064 0.9390416352005934 1.2148043635449248 1.0168382518581602 0.9792376949332241 0.8775861439467519 0.920505167616916 1.0913565731116963 1.1243422644469865 0.8031240086989637 1.0 13.401211018811138 4.014688204625534 24.937352790885786 0.9868040330715967 1.0866475928066976 0.11895579969965953 0.10879039321603469 493.6212672556107 838047.5863685927 0.02784739988019912 0.060120134590002414 10343.99268201659 -4.014688204625534 0.09984355973510095 KDENEIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDENEIEK 8 1 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 ;; 157.66 0.00059855 1534850000.0 1840590.0 1501600.0 1338280.0 1345640.0 1269380.0 1760640.0 1757150.0 1868410.0 3052210.0 1831840.0 False True 1830680.4679487755 1551579.8482636318 1526698.1914617142 1515997.8860284213 1431028.0187952765 1638931.1009007574 1672149.9415351462 2007840.2417937368 2300033.74301861 1714930.402882871 1.067495488371612 0.9047479977352784 0.8902391542509652 0.8839996558927198 0.8344525331113481 0.9556837397865502 0.9750541122393019 1.1707998402841724 1.3411819740044 1.0 20.709718597936178 1.793936617321166 2.9126835054151425 1.1973800549671056 0.9170873982149743 0.567863415268139 0.0963101345281923 0.15765060221271235 2.5451592832339807 0.05250527554314191 0.025600838752168217 62.22094707962914 -1.793936617321166 -0.28029265675213133 KDENKVDGMNAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDENKVDGMNAPK 13 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 128.22 9.4378e-05 370490000.0 407060.0 326820.0 255930.0 281540.0 282650.0 391550.0 407400.0 367230.0 657530.0 437990.0 False True 404868.4341886181 337698.00613313843 291962.7194165613 317182.93513305363 318643.8021021958 364483.07010955835 387692.50558086584 394634.5673561557 495490.5419505955 410037.1032178954 0.9873946309036072 0.8235791431627697 0.7120397571958534 0.7735469123253984 0.777109680079042 0.8889026560015243 0.9455059128511218 0.9624362387187321 1.20840416162849 1.0 18.645394935890828 1.882530802539383 1.305413389450166 1.0868281697972948 0.8110880082735554 0.5940843670489675 0.08793156811994288 0.29891055161376845 0.9461546665249093 0.0678465828590357 0.029062179321258128 76.30110061551528 -1.882530802539383 -0.27574016152373937 KDEPDAFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEPDAFK 8 1 P13674;P13674-2 P13674;P13674-2 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 0 102.06 0.0080774 517900000.0 313900.0 272360.0 230470.0 213040.0 207550.0 399520.0 373970.0 274210.0 463470.0 326050.0 False True 312209.9972775684 281425.3379549035 262918.17271884845 240010.84215651653 233980.26225476994 371902.12276892026 355879.6423958676 294672.9426101662 349254.02867982077 305241.2098545509 1.0228304278650258 0.9219768788395387 0.8613455989252906 0.7862989478743155 0.766542179433317 1.2183876578989241 1.1658964481416065 0.9653773248722853 1.144190290839963 1.0 18.219590224418226 2.742385723779871 24.99892811936253 1.0913246195679878 0.8692557514914507 0.5812459295990298 0.09620959807226818 264.8561423770574 1730965.1792049534 0.031871875944577584 0.03265879403181386 552.567991199568 -2.742385723779871 -0.22206886807653703 KDEQEHEFYK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDEQEHEFYK 10 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;; 127.83 0.00022440000000000006 1729180000.0 4219310.0 3372830.0 2982470.0 2604420.0 2873840.0 3763020.0 3738410.0 3609690.0 5494000.0 4023680.0 False True 4196593.703769415 3485092.6076312093 3402375.851906038 2934139.304962799 3239806.4894157904 3502891.2845962713 3557568.826186954 3879063.397434419 4140077.315828287 3766885.29755424 1.114075256417862 0.9251921235547064 0.9032331974947921 0.7789298248257982 0.8600756947707776 0.9299171617650862 0.9444324807279927 1.0297800678860634 1.099071776492996 1.0 21.844940672912344 1.7879054968096433 2.3649692203325796 1.0543893818280856 0.9098366379073971 0.3149904737482555 0.08188273562221675 0.32557074767279104 3.5642543071490644 0.05316139315519822 0.024265420340280293 61.362846407743014 -1.7879054968096433 -0.1445527439206885 KDESPATWR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDESPATWR 9 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8;H0YHI8;H0YIS4;A0A3B3ISH4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 ; 90.05 0.018748 745380000.0 679610.0 758320.0 576300.0 625030.0 606980.0 866640.0 855680.0 751140.0 1215070.0 916650.0 False True 675951.0552717695 783560.2227858803 657438.0307106025 704158.7339142307 684275.305147676 806731.216651124 814287.4893849667 807193.8810116344 915632.2796038357 858148.6122164525 0.7876853095711505 0.9130822000190352 0.7661120945153678 0.8205556985001794 0.7973855523465905 0.9400833435685153 0.9488886630974093 0.9406224860362931 1.0669856789011318 1.0 19.71086798642945 2.3036415288896444 1.1041402595210574 1.0064406573501017 0.8174795889542472 0.7356641568631521 0.049058764228357796 0.2710935671270664 0.6430316284545382 0.03228986915870734 0.01935025397820505 201.2062787044674 -2.3036415288896444 -0.18896106839585447 KDETNVK ddPTM_BT-474_Trastuzumab_2h_R1 5 KDETNVK 7 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ;;;; 118.06 0.0081639 8518710000.0 8352000.0 5609240.0 5211050.0 4670350.0 6259500.0 4848000.0 6424400.0 6962400.0 11152700.0 7839000.0 False True 8307033.759994426 5795940.162542817 5944720.544741429 5261615.831138221 7056610.222036772 4512869.170964469 6113627.228408714 7481969.642350829 8404266.523523495 7338708.308694458 1.131947668522641 0.789776609008446 0.8100499835507134 0.7169675656551953 0.961560253549869 0.6149405291961114 0.8330658436397667 1.0195213282270184 1.1451969706394554 1.0 22.80709472494979 1.6624405891308527 3.901358836515331 1.0738681136350212 0.825332629472591 0.3567886013487295 0.13454172309421109 0.17957710607734287 6.413035933977698 0.07472122562793578 0.03433203790121242 45.96641028323254 -1.6624405891308527 -0.2485354841624302 KDEVYLNLVLDYVPETVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDEVYLNLVLDYVPETVYR 19 1 A0A3B3ITW1;P49841;P49841-2 A0A3B3ITW1 GSK3B Glycogen synthase kinase-3 beta 0 92.492 0.0030591 192400000.0 248740.0 274800.0 268080.0 271840.0 246390.0 283600.0 294090.0 255350.0 338610.0 285700.0 False True 247400.81147761186 283946.5518798918 305823.33380686824 306254.9161276166 277766.3060320538 263995.39952259115 279863.74316710077 274405.513641027 255164.102641539 267466.3813999243 0.9249790952519384 1.0616158576405377 1.1434084994390057 1.1450220940840203 1.038509230873127 0.9870227358699589 1.0463511029023103 1.0259439418321776 0.9540043922754146 1.0 18.02899804095762 3.0046862658195743 24.994513582324668 1.0099942450170032 1.075852023794177 0.19764000698106632 0.061361500746728755 224.32258052298891 1196421.6442055542 0.01859233599752272 0.02214652775184764 1010.8489535077288 -3.0046862658195743 0.06585777877717391 KDFALDSEESR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDFALDSEESR 11 1 A5YKK6-3;A5YKK6-2;A5YKK6;A5YKK6-4;H3BNB1;H3BTH2 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 ; 155.08 5.0828e-05 920030000.0 913080.0 871330.0 833800.0 809990.0 744000.0 1098540.0 1078740.0 986800.0 1542660.0 1109700.0 False True 908164.0787327249 900331.692319892 951191.7924804784 912534.6509498552 838743.9899665092 1022600.5154850044 1026557.2250130167 1060440.0268688665 1162492.1135849403 1038877.9959380322 0.8741777978584655 0.8666385233301214 0.9155952827950895 0.8783848098793372 0.8073556213972783 0.9843316727116447 0.9881403100525864 1.020755113704536 1.1189880988241487 1.0 19.9865948058664 KDFSELR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDFSELR 7 1 Q14320;B0S8I6 Q14320 FAM50A Protein FAM50A 0 96.253 0.020632 127370000.0 379040.0 414420.0 402840.0 331640.0 326880.0 394720.0 409190.0 363950.0 548170.0 394060.0 False True 376999.2907553031 428213.71917781973 459556.3704519505 373625.58999618446 368506.23043044616 367433.9354709351 389395.9164424011 391109.79710065335 413080.84860167274 368910.75342826085 1.0219254582629431 1.1607515237722423 1.245711506594282 1.0127804259542694 0.9989034665049595 0.9959968151006664 1.0555287771467032 1.060174563810077 1.1197311131837238 1.0 18.492912317390697 3.7073724081093404 24.999070333914798 1.036845197897142 1.1445917431556278 0.3897048832882627 0.06192061876307763 665.6822287915572 533580.893167374 0.016832931299666575 0.026080402166330608 5097.6781028358255 -3.7073724081093404 0.10774654525848582 KDGADFAK ddPTM_BT-474_Trastuzumab_2h_R1 5 KDGADFAK 8 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;A8MVZ9;C9J8F3;J3KSV6;J3QKP5;K7EKH5 H3BPS8;P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C 0 ;;;; 98.943 0.011488 10698700000.0 14074100.0 11804200.0 10941000.0 9024580.0 9033880.0 14961700.0 15751100.0 12430500.0 20431600.0 14704700.0 False True 13998326.609379513 12197095.661210405 12481397.699123206 10167090.902688961 10184291.069998173 13927432.895053426 14989159.117954774 13358127.030800013 15396505.949413393 13766233.456672959 1.0168595973210124 0.8860154594645538 0.906667589098095 0.7385528463314436 0.7398022924753976 1.0117097707871814 1.0888351679586707 0.9703545325482532 1.1184254573243624 1.0 23.714630545638002 2.5932580092292126 7.092719121111914 1.0375917182723577 0.8557001760361124 0.5327002329613806 0.08473462269469813 0.21760311847699312 12.007543759986653 0.028893582801012736 0.02717545166349759 391.97467548092976 -2.5932580092292126 -0.18189154223624537 KDGALHMIGSLAEILLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDGALHMIGSLAEILLK 17 1 O95373 O95373 IPO7 Importin-7 0 80.361 0.007519 17878000.0 48851.0 50849.0 44659.0 44975.0 43959.0 57873.0 58767.0 51253.0 78215.0 66887.0 False True 48587.991643856316 52541.47822613037 50946.59901701335 50668.83038860933 49556.918084593744 53872.37572838832 55924.215698259046 55077.759117460526 58939.96127730413 62618.2143951583 0.7759402294232968 0.8390765967001597 0.8136067038818755 0.809170796038015 0.7914137853222709 0.8603307559749545 0.8930982181213899 0.8795804806870889 0.9412590545197889 1.0 15.934294749093116 1.4712719841228232 0.566531752413885 1.001305321463952 0.8019149621328467 0.8977132590486923 0.02136471863014239 0.22287118846131135 0.17221045739002905 0.021516777541529426 0.011537115831000247 29.598655511244274 -1.4712719841228232 -0.19939035933110527 KDGNASGTTLLEALDCILPPTRPTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDGNASGTTLLEALDCILPPTRPTDK 26 2 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ; 239.21 2.7924e-45 1154170000.0 953230.0 717920.0 684050.0 563780.0 608370.0 892940.0 878830.0 824680.0 1140970.0 866820.0 False True 948097.9155938096 741815.5332081962 780358.2941308127 635154.4901943337 685842.3134085005 831213.1595546649 836317.6354433786 886221.8092401893 859793.2317147057 811498.8054780622 1.1683294038064238 0.9141301603902978 0.9616259307628872 0.7826930685623841 0.8451550498641385 1.0242937561257268 1.030583939000003 1.0920802387603108 1.0595126276349756 1.0 19.630229445572173 2.5543600892641076 6.391932407382543 1.0532782066791082 0.9264057061371985 0.23533450498693786 0.09596992321481902 0.3244728598538427 21.949100529354972 0.032348929990679766 0.030287167571346366 358.39347093531876 -2.5543600892641076 -0.12687250054190968 KDGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDGNASGTTLLEALDCILPPTRPTDKPLR 29 3 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ; 288.98 5.674299999999998e-74 26304000000.0 8629000.0 7749400.0 7245400.0 6165100.0 6505000.0 9199800.0 8224200.0 7980400.0 11402800.0 9447500.0 False True 8582542.422772018 8007334.094388784 8265489.34185424 6945601.027878064 7333373.191844279 8563839.479999779 7826364.026505045 8575937.971650096 8592732.729691807 8844552.46158832 0.9703761111764326 0.9053407879216552 0.9345288388249222 0.7852970580526989 0.8291401089758859 0.9682614826688325 0.8848795979779369 0.9696293858728511 0.9715282674855331 1.0 23.076357713055934 1.6431927405840323 1.253310249689458 0.9957977994179995 0.8899833431735431 0.3258026500179926 0.054717821962431204 0.5222804322000281 1.5619354053986698 0.04891439208673186 0.018004741987291 43.97367280005227 -1.6431927405840323 -0.1058144562444564 KDGS(ph)SPPLLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 KDGS(0.772)S(0.228)PPLLEK;KDGS(0.711)S(0.289)PPLLEK;KDGS(0.67)S(0.33)PPLLEK 154.6 1.9557e-05 1417560000.0 3032150.0 2262320.0 2124840.0 1965250.0 1852090.0 3059240.0 2725660.0 2717600.0 4293710.0 3067160.0 True False 3015825.241303538 2337619.9535986832 2423999.002559631 2214050.4484983804 2087942.6833025122 2847761.9394763494 2593809.412767651 2920401.111693188 3235582.7032663045 2871411.222872209 1.0502937431187147 0.8141014198796694 0.8441838574883603 0.7710670038698654 0.7271486113417045 0.9917638813948064 0.9033221685931565 1.0170612583912575 1.1268266549539439 1.0 21.453328527077396 1.966418903764967 1.3765641386135044 1.0611062513832037 0.8446811275958976 0.4375011367337496 0.09401312537023816 0.3840583687197723 1.3517294969452445 0.06717520785194847 0.030821789210381527 92.55905325538959 -1.966418903764967 -0.21642512378730605 KDHPFGFVAVPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDHPFGFVAVPTK 13 1 P63279;H3BQQ9;B0QYN7;H3BPC4 P63279 UBE2I SUMO-conjugating enzyme UBC9 0 85.42 0.006032899999999999 821210000.0 1443200.0 1450900.0 1410400.0 1261800.0 1253700.0 1725700.0 1603100.0 1482700.0 2294000.0 1705300.0 False True 1435429.9715545936 1499192.3294124294 1608972.0605834336 1421543.7506247319 1413351.2637379195 1606406.4208608447 1525551.9285632926 1593346.602998044 1728674.438025132 1596466.2940192192 0.899129519321573 0.9390692024183639 1.0078334046957735 0.8904314209139316 0.8852997830475365 1.006226330539432 0.9555804180009372 0.9980458773023506 1.0828129879729995 1.0 20.606450663124978 1.8608411979109658 1.2491536476717238 1.0373963195767568 0.932949158572893 0.46941813558720247 0.04414136055035447 0.4128492849925001 1.195230992988614 0.03501545860373163 0.014751274735366688 72.58405014624479 -1.8608411979109658 -0.10444716100386386 KDHPYTWR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDHPYTWR 8 1 Q9Y570;Q9Y570-4;Q9Y570-2;Q9Y570-3 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 136.57 0.00050988 784490000.0 1555800.0 1745500.0 1797100.0 1531900.0 1382400.0 1705400.0 1923400.0 1481000.0 2301100.0 1794400.0 False True 1547423.7456656294 1803597.9123229696 2050116.0593267805 1725838.382930756 1558440.4458732547 1587509.712079787 1830357.793898472 1591519.7403656207 1734024.7381602607 1679879.8557368694 0.9211514385276447 1.0736469671706563 1.2203944539995148 1.0273582226948768 0.9277094671688018 0.9450138393280721 1.0895766073077866 0.9474009316383581 1.032231401691308 1.0 20.67992662510752 3.48268135383058 24.968951939227882 0.9886977240231143 1.0805815172964677 0.16862995645260448 0.08034079985602707 375.5706821538314 1686591.9139259474 0.02213586968216638 0.030908034269485775 3038.6547164684844 -3.48268135383058 0.09188379327335339 KDHS(ph)VDSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDHSVDSFK 9 1 Q641Q2;Q641Q2-2;F8W7U3;A0A087WYF6;B1AP61 Q641Q2 FAM21A WASH complex subunit FAM21A 1 KDHS(1)VDSFK 118.37 0.00084642 0.0 272720.0 165000.0 138310.0 168830.0 169870.0 225190.0 171000.0 164030.0 303760.0 192930.0 True False 271251.70582204056 170491.92525539352 157782.84578792888 190203.86068947002 191501.93760162758 209623.1453402412 162728.07671656375 176270.7515274627 228902.4181754639 180617.04222431703 1.501805712692161 0.943941519337092 0.8735767336504754 1.053078150029977 1.060265051643311 1.160594497389123 0.9009563810399679 0.9759364307856594 1.2673356586759899 1.0 17.46257449999381 4.744016812016637 24.948855858186683 1.0189953897871766 1.5018059231216327 0.614338756266636 0.11292289725922112 380.2148125195796 1738506.4191801883 0.026889298383033357 0.23402862487124104 55464.71835443055 -4.744016812016637 0.4828105333344561 KDIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_BT-474_Trastuzumab_2h_R1 6 KDIDHETVVEEQIIGENSPPDYSEYMTGK 29 1 P25490;A0A494C032;H0YJV7;H0YJU4 P25490 YY1 Transcriptional repressor protein YY1 1 KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK 407.93 4.8458999999999966e-175 3746580000.0 1270989.0 1301213.0 1296429.0 1121181.0 1209944.0 1699260.0 1563280.0 1510610.0 2117950.0 1756400.0 True False 1264146.1364441516 1344523.0881051319 1478954.9344371243 1263122.3996427217 1364023.1965000513 1581794.1558277812 1487658.174090465 1623339.3889221547 1596009.6015759932 1644305.0482703072 0.7688026852279898 0.8176847048663356 0.8994407308989779 0.7681800898023377 0.8295438841685169 0.9619833968713511 0.9047336901722562 0.9872495317275788 0.9706286575321791 1.0 20.64904653914779 2.755537568310101 5.097770187537838 0.9616190894220678 0.8177109443795112 0.7634335753733206 0.04125725952440407 0.09348487739662464 7.46035375954316 0.013051118980964673 0.013318202045824346 569.5574911296688 -2.755537568310101 -0.14390814504255656 KDIHFMPCSGLTGANLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDIHFMPCSGLTGANLK 17 1 P15170-2;P15170-3;P15170;H3BR35 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 153.74 1.0640999999999997e-07 720760000.0 1231900.0 1185200.0 1163600.0 999760.0 1018700.0 1287800.0 1337400.0 1189500.0 1685100.0 1412000.0 False True 1225267.5872769563 1224648.6655314693 1327424.765807492 1126329.513492299 1148425.406692045 1198777.4171551235 1272704.8526358616 1278266.5301586124 1269829.6841831533 1321884.9511259794 0.9269094002721457 0.9264411887648131 1.0041908448059673 0.8520631939511024 0.8687786374402842 0.9068697061223119 0.9627954774368024 0.9670028613835017 0.9606204254776594 1.0 20.33416518817979 2.186048249418131 5.581742851219026 0.9700966783515915 0.913957255107886 0.34691722052896656 0.03925363504920399 0.257803931991793 17.21008784505683 0.015846905831584317 0.011758054251065119 153.47874857479098 -2.186048249418131 -0.05613942324370558 KDIPSFER ddPTM_BT-474_Trastuzumab_2h_R1 2 KDIPSFER 8 1 K7EJR3;R4GMR5;P48556 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 ; 98.943 0.011488 423910000.0 383540.0 449490.0 405050.0 359890.0 364880.0 386210.0 421290.0 377200.0 474460.0 414320.0 False True 381475.06325529964 464451.00292755716 462077.5192422865 405452.03709964646 411345.30518680054 359512.2117405497 400910.59321591235 405348.5793827897 357535.6904382759 387877.7428828024 0.983493047113463 1.1974159679172194 1.1912968138053326 1.0453088493457439 1.060502472066537 0.9268699180019119 1.033600407788925 1.0450421217008736 0.9217741852909195 1.0 18.565242468264735 3.3487803941286725 2.268107207760276 0.9991924186726647 1.1289723354583998 0.3923133904888102 0.06961599115597392 0.2986245233315387 3.129680420099733 0.020751321611127707 0.030340317734225162 2232.443077513973 -3.3487803941286725 0.12977991678573508 KDIS(ph)ENKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDISENKR 8 2 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 KDIS(1)ENKR 67.08 0.047271 247480000.0 403160.0 244120.0 210100.0 214160.0 239390.0 339560.0 308040.0 357750.0 538180.0 381390.0 True False 400989.4313552869 252245.38662634356 239680.25377806256 241272.63404168026 269874.8975243045 316087.0164382622 293138.92837292515 384447.12161769124 405552.75024253083 357049.3636755937 1.123064405513452 0.7064720240070993 0.671280439518806 0.6757402717594385 0.7558475801388242 0.8852753949323688 0.8210039232537717 1.0767338097456756 1.1358450441351469 1.0 18.445764021539187 1.7753433985993015 3.1510293346519695 1.0862691704055865 0.7878956304652885 0.4673912032927737 0.1288461596701376 0.19547353127637973 3.794839263643429 0.07283520772413453 0.035677750311159336 59.61333225209457 -1.7753433985993015 -0.2983735399402979 KDISENKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDISENKR 8 2 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 106.88 0.0023118 642010000.0 442660.0 471950.0 402230.0 372260.0 367340.0 352260.0 447800.0 440140.0 723320.0 462380.0 False True 440276.7677441495 487658.57045020076 458860.48775416496 419388.07783132256 414118.5716052383 327909.09533084655 426138.2032378786 472985.4817856338 545067.4779914295 432870.5125365654 1.0171096320795434 1.1265691617398108 1.0600409925483296 0.9688534231028176 0.9566800223433027 0.7575223671608895 0.9844472905783387 1.0926719840859562 1.2591929045880357 1.0 18.723576000867862 -0.5934025400402079 6.674894625948613 0.9999922494716467 1.0207577845820137 0.0026660984524644604 0.12336403239901916 0.0 0.0 0.12624996725150328 0.029757402656039184 0.2550336344184826 0.5934025400402079 0.02076553511036705 KDKDDDGGEDDDANCNLICGDEYGPETR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDKDDDGGEDDDANCNLICGDEYGPETR 28 2 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 63.625 0.011222 255840000.0 90025.0 57958.0 48820.0 52649.0 47512.0 90156.0 67060.0 73920.0 130160.0 74687.0 False True 89540.31540271788 59887.09699364914 55693.43164895301 59314.35800177645 53562.37157431283 83923.72792439615 63816.05160592256 79436.28575815444 98083.81205464306 69920.41171724228 1.2806033775204066 0.856503780839166 0.7965260827435757 0.8483124819350799 0.7660477142342743 1.2002750822432682 0.912695592583097 1.136095795307875 1.4027922554474277 1.0 16.093426059534913 1.6126223348039506 4.126293471482784 1.2206650550101092 0.9405912500843192 0.2465449033027054 0.18269159964640116 0.20941749158948486 8.156903760960597 0.10495098985777611 0.04690882170961595 40.98475419909468 -1.6126223348039506 -0.28007380492579004 KDKEGDRAS(ph)EEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDKEGDRASEEGK 13 3 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 KDKEGDRAS(1)EEGK 82.70700000000002 0.064203 37935000.0 43074.0 27355.0 26448.0 21781.0 26738.0 38040.0 36622.0 33040.0 60723.0 42663.0 True False 42842.09436997131 28265.494638553293 30171.648509862942 24538.472366743772 30142.92581145765 35410.384336528106 34850.45395037421 35505.61257372051 45758.63029651269 39940.210814368096 1.0726556895027526 0.7076951789244202 0.7554203619528466 0.6143801413766273 0.7547012195692776 0.8865848130122931 0.8725655984228583 0.8889690827807978 1.1456782366319276 1.0 15.285554327254738 1.657774938968369 1.2519848832215585 1.0620806027854326 0.7790615782593233 0.40432750412315976 0.12269304525304413 0.4183498703978901 1.2465851438516806 0.10427433195672842 0.03869779257714764 45.47523363311905 -1.657774938968369 -0.2830190245261093 KDKS(ph)PVREPIDNLTPEER ddPTM_BT-474_Trastuzumab_2h_R1 9 KDKSPVREPIDNLTPEER 18 3 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;H0Y4X3;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 1 KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER 200.54 8.2992e-15 21404440000.0 8448460.0 6485420.0 5618301.0 5534900.0 5728749.0 8451430.0 8153540.0 8288920.0 12593230.0 8178800.0 True False 8402974.430072146 6701283.284180821 6409308.945652278 6235617.772493919 6458271.228194415 7867202.536626286 7759122.120652449 8907481.30068291 9489797.207136549 7656821.981777038 1.0974493660778484 0.8752042688375979 0.8370716938314883 0.8143871944958974 0.8434662897432993 1.0274762238628437 1.0133606526466048 1.1633392185272684 1.2393911246365563 1.0 22.86831428490803 2.2434612412458863 1.6742443402063039 1.1441011633083213 0.8880881776805998 0.5134798751158057 0.09732767470291517 0.27543856778905546 1.5367025013363846 0.05196641426414441 0.032238345131515904 175.17060956448282 -2.2434612412458863 -0.25601298562772157 KDLEEWNQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDLEEWNQR 9 1 P09497-2;P09497 P09497-2 CLTB Clathrin light chain B 0 68.107 0.09461 526140000.0 570220.0 739730.0 806960.0 734750.0 655600.0 685620.0 717230.0 549950.0 929300.0 723980.0 False True 567149.9988773974 764351.4658737719 920572.9537779414 827769.2746643861 739086.773954358 638224.7031758776 682534.8448153273 590990.0615895157 700286.4669820208 677774.976569538 0.8367821452304816 1.1277363318168347 1.3582280042814372 1.22130397739678 1.0904604027949525 0.9416468964466075 1.0070227854528957 0.8719561536200822 1.0332138116494378 1.0 19.370446847987175 2.874113067780825 3.8431418715213117 0.9586020819578118 1.1518272196894705 0.2674957840924732 0.1285355462960432 0.2967253945134686 7.697444658112893 0.042226527070448855 0.04534706334493658 748.3643104420065 -2.874113067780825 0.19322513773165872 KDLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDLGSTEDGDGTDDFLTDKEDEK 23 2 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 KDLGSTEDGDGT(1)DDFLTDKEDEK 234.74 2.1315e-35 135570000.0 416480.0 187380.0 146970.0 149130.0 137630.0 243130.0 207230.0 302600.0 622730.0 256750.0 True False 414237.7179552784 193616.83002639786 167662.09851385964 168009.84270935674 155156.36470307875 226322.9953664587 197205.4932045232 325181.5485716656 469266.5356544856 240363.99518526622 1.7233767380010259 0.8055151100195481 0.697534164318704 0.6989809042733676 0.6455058486754155 0.9415844298644434 0.8204452295466399 1.352871291397134 1.9523162580684654 1.0 17.874861281226806 1.6271041983076076 4.310129929935625 1.5253469639058783 0.8771650083889356 0.30854038458597977 0.3620037053847808 0.17079923927712595 7.226331189784552 0.20074462769930954 0.09159674683171747 42.37446209815193 -1.6271041983076076 -0.6481819555169427 KDLGSTEDGDGTDDFLT(ph)DKEDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDLGSTEDGDGTDDFLTDKEDEK 23 2 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 KDLGSTEDGDGT(0.001)DDFLT(0.999)DKEDEK;KDLGSTEDGDGT(0.007)DDFLT(0.993)DKEDEK 208.15 5.090100000000001e-23 210898000.0 445239.0 211599.0 162790.0 143893.0 159971.0 286540.0 240834.0 275365.0 562692.0 258045.0 True False 442841.8826947028 218641.94480070338 185709.41700395444 162109.83904631843 180342.35862759728 266732.1642426071 229183.93934477735 295914.1345751379 424024.0962865028 241576.34717656067 1.8331342777157047 0.9050635434970989 0.7687400657160578 0.6710501294559164 0.7465232450749437 1.1041319539766896 0.9487018991030356 1.2249300812503114 1.755238462880626 1.0 17.88211968124566 1.573529773413476 4.140962955277426 1.4087161703991267 0.9678723203059671 0.1572315556286955 0.3521954962205946 0.2627260115271892 10.137303334802874 0.20955969070047756 0.09077236070193449 37.456722491842115 -1.573529773413476 -0.4408438500931595 KDLYANTVLSGGTTMYPGIADR ddPTM_BT-474_Trastuzumab_2h_R1 6 KDLYANTVLSGGTTMYPGIADR 22 1 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;; 283.93 1.1725e-45 47313040000.0 23567430.0 25918520.0 25216330.0 24428870.0 22934530.0 27087890.0 28773520.0 24429340.0 32084920.0 28301680.0 False True 23440545.575467624 26781202.270123824 28766570.079730492 27521562.43725155 25855106.45189056 25215367.922334325 27381634.912079412 26252381.40047497 24178021.381901223 26495442.552112684 0.8847010397868795 1.0107852404219742 1.0857176672233662 1.0387281655371725 0.975832217221408 0.9516869881580337 1.0334469733133809 0.9908263033855861 0.9125351023802138 1.0 24.659240889060463 3.2049733862766088 24.94344023191336 0.9805411663127458 1.0111642654682345 0.049407304552959164 0.05574413790447473 574.5372634377198 426676.6429140103 0.01668782568942745 0.019947250676390436 1603.1471462411816 -3.2049733862766088 0.030623099155488664 KDNDFIYHDR ddPTM_BT-474_Trastuzumab_2h_R1 4 KDNDFIYHDR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ;;; 130.01 0.000187 5516840000.0 5178200.0 5233750.0 4828880.0 4506450.0 4528650.0 5645270.0 5642810.0 5162560.0 6448390.0 5558240.0 False True 5150321.1465521 5407952.204881314 5508744.33062262 5076966.107943271 5105346.734088481 5255025.77243618 5369845.722672473 5547816.442148502 4859270.688499082 5203508.364551321 0.9897785850866395 1.0392896150072053 1.0586596474314727 0.9756813580871488 0.9811354909830526 1.0099005140908046 1.0319663862278607 1.066168448953165 0.9338450806772325 1.0 22.311053229779265 KDPANPS(ph)PVMPGIATSER ddPTM_BT-474_Trastuzumab_2h_R1 1 KDPANPSPVMPGIATSER 18 1 Q70EL1-7;Q70EL1;Q70EL1-9;Q70EL1-10;Q70EL1-8 Q70EL1-7 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 KDPANPS(1)PVMPGIATSER 87.95200000000001 0.0019398 536460000.0 335350.0 363380.0 360490.0 351710.0 355040.0 373510.0 355280.0 378370.0 470030.0 397110.0 True False 333544.5128608874 375474.8836321514 411243.8585647497 396236.4499383616 400252.23951305024 347690.13284796616 338093.7490986006 406605.8907239298 354197.40457931726 371766.09981702396 0.8971891547536247 1.0099761215908412 1.1061897756873365 1.0658218975140052 1.076623822640221 0.9352389392660936 0.9094259784983185 1.0937142760570513 0.952742610887992 1.0 18.504035695862406 2.7470570007145874 24.65483095600156 0.9873216699564736 1.0360772247567365 0.11692236920227161 0.06990843764863179 1375.2247415850231 3990625.4734256184 0.022826914573541482 0.023851310334470383 558.5434981994155 -2.7470570007145874 0.048755554800262835 KDPDMVK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDPDMVK 7 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;; 95.099 0.021992 3153070000.0 5541700.0 5109500.0 4400200.0 4042440.0 4469400.0 5311700.0 5693500.0 5729100.0 8600200.0 5855300.0 False True 5511864.102940754 5279566.61874203 5019709.912775968 4554212.489519294 5038551.597790749 4944514.681396857 5418083.65371786 6156634.533780337 6480795.946775831 5481609.741025461 1.0055192476926738 0.9631416441832223 0.9157364624496082 0.8308166222477787 0.919173716450703 0.9020187344588073 0.9884110525358711 1.1231435334958007 1.182279704859735 1.0 22.38616818958403 1.8992205471246943 3.162856629228157 1.114088785083533 0.9205583244137157 0.6399191701563324 0.059672249426727386 0.15023821981115218 2.634224836912068 0.03127493788201587 0.016869089293170433 79.29038874658227 -1.8992205471246943 -0.19353046066981738 KDPEDTGAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDPEDTGAEK 10 1 O75363;G3XAF7;H7C1E7 O75363 BCAS1 Breast carcinoma-amplified sequence 1 0 85.845 0.022387 328160000.0 380810.0 282980.0 294420.0 230350.0 190340.0 342480.0 358450.0 323470.0 419530.0 297140.0 False True 378759.76127196883 292398.81823497766 335871.7768554844 259512.2863816823 214578.67076643175 318805.1637112028 341110.40408802463 347608.97394737834 316142.45291398617 278176.27080564725 1.361581849433146 1.0511278240524953 1.2074062819331817 0.93290590757468 0.7713766172253812 1.1460544883569226 1.226238323995462 1.249599661900139 1.1364824612767372 1.0 18.085639833745066 2.4924940579985058 24.89335083992596 1.184148310414629 1.0541033373489657 0.053579554978534505 0.1596605709640946 1450.684032958064 2349110.645070196 0.05420670411423497 0.04958256803883292 310.8093377626665 -2.4924940579985058 -0.13004497306566343 KDPEDTGAEKSPTTSADLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDPEDTGAEKSPTTSADLK 19 2 O75363;G3XAF7;H7C1E7 O75363 BCAS1 Breast carcinoma-amplified sequence 1 0 122.19 1.8939e-05 122020000.0 118020.0 110370.0 102550.0 96722.0 96668.0 168070.0 159610.0 111340.0 216840.0 144260.0 False True 117384.59343325478 114043.5987299262 116988.14861942097 108966.99528286984 108978.09680387414 156451.71649422392 151889.05453058882 119648.75617306416 163402.68750713606 135053.20329280035 0.8691729671806497 0.8444346076166402 0.8662374957947968 0.8068449516641628 0.8069271527577586 1.1584450622398847 1.1246608805071268 0.8859379359826158 1.2099134527958806 1.0 17.043168333608612 2.7499536326262684 24.826215937954483 1.0577060096041015 0.8387982441741709 0.6512135417336924 0.08624196905113161 465.98423065503584 1015413.2048594868 0.027121017120739544 0.02852847331511855 562.2812901228607 -2.7499536326262684 -0.21890776542993062 KDPELWGSVLLESNPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDPELWGSVLLESNPYR 17 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 220.34 6.4728000000000006e-15 11527400000.0 1245920.0 1342420.0 1341030.0 1321260.0 1124570.0 1520060.0 1689650.0 1035120.0 1439230.0 1436810.0 False True 1239212.1051547267 1387101.6381899735 1529835.3675582858 1488531.3805281592 1267777.3236513943 1414981.8300363554 1607915.1744101834 1112365.910632856 1084551.0511939467 1345111.5556850703 0.9212708789224484 1.0312168030431628 1.1373297337997628 1.1066229966108978 0.9425071982269237 1.0519438510924841 1.1953768203197588 0.826969262089436 0.8062907842922967 1.0 20.35929439575641 1.6654353624790028 8.918417020147146 0.8634138940676388 1.0545370860740428 0.43713024951346835 0.09157959900687687 0.10051368209271651 13.063252730184228 0.04420326313267523 0.023423675503936595 46.28447718935186 -1.6654353624790028 0.19112319200640404 KDPELWGSVLLESNPYRR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDPELWGSVLLESNPYRR 18 2 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 152.04 2.4385e-08 3471300000.0 264200.0 410560.0 471360.0 397910.0 279470.0 375730.0 409830.0 396460.0 491720.0 396090.0 False True 262777.5765553797 424225.24141123914 537723.3908654334 448285.3652013689 315058.8479515323 349756.6694732838 390004.95719736366 426045.8583830881 370542.1947104268 370811.1970902898 0.7086559915594871 1.144046470926668 1.4501271673694949 1.2089315768213298 0.8496476115709575 0.9432203563910198 1.0517615440355765 1.1489562929227002 0.9992745570199233 1.0 18.500325282970742 3.2784006993577397 24.998733875896132 1.016901031186076 1.1521041132257008 0.09471423401038637 0.18477314936528505 385.54194473284093 241916.21279226698 0.054026930791257755 0.07315181033515696 1898.456713802183 -3.2784006993577397 0.13520308203962483 KDPEQEVEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KDPEQEVEK 9 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ;;;;; 131.83 0.00051666 3887190000.0 2830690.0 2137900.0 1923890.0 1752540.0 1766690.0 2603310.0 2540110.0 2412360.0 4046110.0 2502000.0 False True 2815449.8795592263 2209058.709112157 2194756.989248343 1974411.384308025 1991667.4995079718 2423349.3072325727 2417235.1751374854 2592382.5529158697 3049000.40559628 2342320.2179300296 1.2019918788248833 0.9431070492421232 0.9370012573207892 0.8429297451280443 0.8502968485103464 1.034593514875669 1.0319832261336412 1.1067583898527875 1.301700929811707 1.0 21.15950688907443 1.9559265910715138 1.7575391834564955 1.1540015446389225 0.9520302749874908 0.2928261741507632 0.1169659703039958 0.4161546621898972 2.390134109633897 0.07476408958071924 0.03594907229671184 90.34967424851321 -1.9559265910715138 -0.20197126965143164 KDPLEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDPLEGR 7 1 Q14165;F5GX14 Q14165 MLEC Malectin 0 ; 72.547 0.08226900000000001 304490000.0 279490.0 423630.0 445470.0 311280.0 417230.0 520150.0 423370.0 315690.0 523650.0 399720.0 False True 277985.25689425855 437730.2684602576 508188.3039053475 350688.01608374284 470361.7673840405 484193.25480139646 402889.9756695415 339248.3908413385 394603.4740505061 374209.5273824909 0.7428599128373378 1.169746456008428 1.3580314415295813 0.9371434729006618 1.256947600116203 1.2939094795052821 1.0766427527584979 0.9065733660345382 1.0544987371397678 1.0 18.513486764529393 1.992475158324137 23.821591886218815 0.9803844513736953 1.1403473416676468 0.11267092691006853 0.17205855616253382 354.04572292510284 1120812.6198295497 0.06598532085643644 0.04662741593722336 98.28226538650956 -1.992475158324137 0.1599628902939515 KDPSGASNPSADS(ph)PLHR ddPTM_BT-474_Trastuzumab_2h_R1 8 KDPSGASNPSADSPLHR 17 1 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 KDPSGASNPS(0.001)ADS(0.999)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPS(0.037)ADS(0.963)PLHR;KDPSGASNPSADS(1)PLHR 226.75 1.2099e-15 25552430000.0 7727170.0 8058290.0 7526560.0 7429840.0 6893360.0 8621810.0 9355240.0 7638120.0 9504890.0 8965360.0 True False 7685567.775289293 8326505.311310819 8586234.225967709 8370456.982201338 7771188.535854216 8025804.568257664 8902691.300712667 8208115.29998747 7162537.218500742 8393183.049169134 0.9156916667092242 0.9920557269551132 1.0230009491831213 0.9972923184404936 0.9258928931168144 0.9562289445185116 1.0607050088814602 0.9779502307887846 0.8533755521047265 1.0 23.000786614598205 1.4408431314462478 24.99993503972328 0.9230126413542112 0.9847665672681705 0.14567859576489794 0.052217589126896134 56.26676965654753 38779.13062710068 0.02768875394251065 0.012677235644318068 27.595809067444748 -1.4408431314462478 0.06175392591395923 KDPSGASNPSADSPLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDPSGASNPSADSPLHR 17 1 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 0 120.9 4.0276e-05 558010000.0 184000.0 272080.0 250310.0 251320.0 247610.0 278000.0 290620.0 245660.0 292990.0 266780.0 False True 183009.36444432195 281136.01832416694 285551.4722664774 283137.08623157983 279141.66580054734 258782.51434160915 276561.600323788 263992.39663620386 220786.5403648576 249753.87199815077 0.7327588676810464 1.1256522914937972 1.143331512668567 1.1336644511908758 1.1176670198034573 1.0361501596400684 1.107336587461738 1.0570102258040608 0.8840164863049343 1.0 17.930147519098064 -3.170474452079275 10.096079189821882 1.0017144082138894 1.0492831233808408 0.0 0.12649339694463269 0.0 0.0 0.0 0.026783410735377 0.0006753447808352015 3.170474452079275 0.04756871516695149 KDQES(ph)PKMPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDQESPKMPR 10 2 H0Y5Q9;Q92835-3;Q92835-2;Q92835 H0Y5Q9 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 1 KDQES(1)PKMPR 53.252 0.075565 95310000.0 182450.0 140290.0 146950.0 174460.0 141440.0 183900.0 211480.0 181800.0 277700.0 204370.0 True False 181467.7094721006 144959.467842904 167639.28268770245 196546.61811221312 159451.5456194396 171187.42585403562 201249.90446794682 195366.83916169443 209264.55598935447 191326.9316300401 0.948469240195605 0.757653230561421 0.8761928143595521 1.0272815041651642 0.8333983316460829 0.894737737105682 1.0518639626599684 1.0211152057749302 1.0937537868113596 1.0 17.54568043957078 2.2503961026824872 9.271893815031435 1.041422054727829 0.8865866797174017 0.5348035417824577 0.06944433537888964 0.13621203791799436 87.27781267822886 0.0247432350635192 0.02000290507394642 177.99020476514124 -2.2503961026824872 -0.15483537501042732 KDQEWSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDQEWSEK 8 1 Q92805;R4GNH1 Q92805 GOLGA1 Golgin subfamily A member 1 0 ; 110.38 0.0094325 0.0 306100.0 341940.0 257200.0 261640.0 274776.0 370370.0 342250.0 310080.0 534780.0 369630.0 False True 304451.99161090737 353321.26619290514 293411.5243775238 294763.5971734467 309767.0948750503 344767.1936572012 325694.0599780346 333219.7441543359 402990.63468486554 346039.89694383583 0.879817599935078 1.0210419934619595 0.8479124140565389 0.8518196883560175 0.895177398938271 0.9963220908979717 0.9412037827271013 0.9629518072837112 1.1645785305220835 1.0 18.400578858555253 1.421267243546642 4.689262673633623 1.081928379381647 0.9219765589470995 0.4896431061075135 0.0653207055635441 0.16686855117343802 6.345740438859724 0.04498542833409251 0.016454269825814122 26.379541542325143 -1.421267243546642 -0.15995182043454748 KDQGELER ddPTM_BT-474_Trastuzumab_2h_R1 3 KDQGELER 8 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;; 117.7 0.0032531999999999995 1735050000.0 2437080.0 2609430.0 2329000.0 2251720.0 2255330.0 2548220.0 2751860.0 2522280.0 3195500.0 2907940.0 False True 2423959.0320650423 2696283.3001162545 2656902.9559691013 2536787.521125948 2542532.907111784 2372067.549264658 2618742.0186739312 2710505.3414783184 2408011.842506241 2722352.7795873126 0.8903912271180723 0.9904239157883828 0.9759583606838299 0.9318364394751606 0.9339468882123396 0.8713299639381215 0.9619407294711129 0.9956480885953399 0.8845333567941466 1.0 21.376422601773367 -1.6294437503732704 3.9251386352297817 1.0020059966415185 0.9428764942782146 0.15337937451162076 0.04240590176654648 0.0007721338117862703 7.289387352966636e-05 0.04258842132136745 0.009700542688982527 0.023472332555992178 1.6294437503732704 -0.05912950236330383 KDQGGYTMHQDQEGDTDAGLKES(ph)PLQTPTEDGSEEPGSETSDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDQGGYTMHQDQEGDTDAGLKESPLQTPTEDGSEEPGSETSDAK 44 2 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau 1 KDQGGY(0.003)T(0.004)MHQDQEGDT(0.051)DAGLKES(0.874)PLQT(0.05)PT(0.013)EDGS(0.003)EEPGSETSDAK 68.154 0.00075887 167210000.0 92765.0 52871.0 52913.0 44568.0 42934.0 82782.0 81476.0 73743.0 135090.0 78853.0 True False 92265.56354716045 54630.779273805594 60362.69047195924 50210.304230340036 48401.390410244734 77059.47518786724 77534.69461145457 79246.0771193665 101798.8796132586 73820.53403055016 1.2498631276356917 0.7400485514124971 0.8176951205335161 0.6801671769207308 0.6556629675723306 1.0438758835851372 1.050313380005722 1.0734963944662201 1.379004919838832 1.0 16.171734553876938 2.560481894417028 5.332971457094265 1.1148324909322544 0.8153492207689126 0.3796274172911126 0.18098585070537238 0.23629325569451573 11.283080175926012 0.0596038952638807 0.05554496857185522 363.4811508299005 -2.560481894417028 -0.29948327016334186 KDREDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 KDREDSPER 9 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 KDREDS(1)PER;KDREDS(1)PER 148.62 7.055600000000001e-05 736130000.0 1354350.0 1086920.0 999830.0 889700.0 991560.0 1023720.0 1248410.0 1215170.0 1606200.0 1285930.0 True False 1347058.3300824321 1123097.4751429863 1140597.3733218487 1002335.9287770038 1117829.2885634282 952952.6459776688 1188019.6389106726 1305852.1559082295 1210373.5319773182 1203860.8464599391 1.118948534661276 0.9329130342975729 0.9474495135180097 0.8326011529691846 0.9285369582792775 0.7915803963389221 0.9868413300458695 1.0847201815294558 1.0054098324873098 1.0 20.19923721082016 2.0045102699031694 24.977989611857467 1.0385377225992307 0.9198337949794667 0.2419884401975395 0.08332467809473647 154.0911215510643 853355.9247511817 0.03145622163106358 0.023141037850660358 101.0439394435406 -2.0045102699031694 -0.118703927619764 KDRHDT(ph)PDPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDRHDTPDPSPR 12 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 KDRHDT(1)PDPS(1)PR 114.69 6.2732e-05 0.0 110120.0 132380.0 83051.0 141330.0 120160.0 145150.0 154530.0 131400.0 220760.0 174220.0 True False 109527.12615548207 136786.18827460002 94743.85890776716 159222.36350910866 135461.66375588122 135116.12214634742 147054.79353807349 141205.73523568027 166356.65603244497 163101.13044275375 0.6715289210942935 0.838658738313344 0.580890265141485 0.9762186385642098 0.830537859475023 0.8284192867306417 0.9016172551280243 0.8657557115169201 1.019960165701205 1.0 17.315407255741686 6.148767108193424 0.16188616215250293 1.0473498267355277 0.1671802820243215 0.5020795376700566 0.09346846776950449 28.820360163929216 0.513897145000049 0.28691216116201945 5.48956946145527 1408533.265387645 -6.148767108193424 -0.8801695447112061 KDRNNTEVER ddPTM_BT-474_Trastuzumab_2h_R1 1 KDRNNTEVER 10 2 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 0 51.43600000000001 0.088095 278990000.0 839210.0 707690.0 488900.0 416240.0 396650.0 538660.0 476750.0 459250.0 832380.0 518330.0 False True 834691.7866049972 731245.0338423619 557732.8704050215 468935.9413219511 447161.0263712575 501423.7020692489 453687.78113813826 493521.5670242472 627251.1023205577 485249.73563536105 1.7201282665555597 1.5069457645039357 1.149372847518927 0.9663806219450084 0.9215069963629509 1.0333312215259849 0.9349572968733364 1.0170465448642758 1.2926356394594782 1.0 18.888367901393973 4.297581204464222 2.1678234679246455 1.0150065642931465 1.7142901963978634 0.8521980094573718 0.09866071823377863 0.11549194890692212 1.0114432312334642 0.02604458441633192 0.11033753422361535 19841.806246214193 -4.297581204464222 0.6992836321047169 KDS(ph)AQDDQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDSAQDDQAK 10 1 Q13045-3;Q13045;Q13045-2;J3KS54 Q13045-3 FLII Protein flightless-1 homolog 1 KDS(1)AQDDQAK;KDS(1)AQDDQAK 163.64 3.9209e-06 671430000.0 899570.0 447860.0 364350.0 337170.0 380270.0 518570.0 618030.0 649460.0 1134840.0 697970.0 True False 894726.8150716219 462766.74936291267 415647.31301302783 379855.68742918107 428695.1304631242 482722.4764824759 588133.5277961271 697926.0030910573 855173.8880769144 653424.957037819 1.3692877895691347 0.7082171324780431 0.6361056591674856 0.5813302405086982 0.6560740079572935 0.7387573297947002 0.9000781519921148 1.0681042950287292 1.3087560841778785 1.0 19.317662032835514 1.8064123471589255 2.2623705849271425 1.1587898705945274 0.7587174397817634 0.3251703245379616 0.22026259569766482 0.31722334735837804 3.129342158932897 0.13844517428806832 0.06334644572415289 64.03425293942145 -1.8064123471589255 -0.400072430812764 KDS(ph)DDEKSDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KDSDDEKSDR 10 2 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 KDS(0.988)DDEKS(0.012)DR;KDS(1)DDEKSDR;KDS(0.953)DDEKS(0.047)DR 150.34 1.135e-05 1285696000.0 3527800.0 1674510.0 1383265.0 1277321.0 1428595.0 1523160.0 2327960.0 2453780.0 5078780.0 2514890.0 True False 3508806.716775427 1730245.0530873307 1578016.6884450826 1439029.7076333263 1610518.1053040365 1417867.5343329688 2215347.6811291873 2636893.5236423686 3827182.7211653404 2354387.567094349 1.4903267269227882 0.7349023912926539 0.670245082203089 0.6112119039981573 0.6840496984494555 0.6022235056579152 0.940944350918079 1.1199912709769668 1.6255534027851801 1.0 21.166920398239633 1.685120422858619 2.663194270583795 1.3202761506299496 0.7802391470132153 0.3347617772134115 0.2838019458271332 0.24546994075491516 3.8933798213995168 0.1789122470111171 0.07652891816062875 48.430663939118524 -1.685120422858619 -0.5400370036167343 KDS(ph)DTESSDLFTNLNLGR ddPTM_BT-474_Trastuzumab_2h_R1 5 KDSDTESSDLFTNLNLGR 18 1 Q9Y3S2 Q9Y3S2 ZNF330 Zinc finger protein 330 1 KDS(0.978)DT(0.022)ESSDLFTNLNLGR;KDS(0.985)DT(0.015)ESSDLFTNLNLGR;KDS(0.996)DT(0.003)ESSDLFTNLNLGR;KDS(0.987)DT(0.013)ESSDLFTNLNLGR;KDS(0.972)DT(0.028)ESSDLFTNLNLGR 365.32 1.1349999999999996e-107 3956650000.0 2267260.0 1493610.0 1448781.0 1190260.0 1314460.0 1875510.0 1844760.0 1785070.0 2506240.0 1774770.0 True False 2255053.3240762665 1543323.9059436878 1652756.7717698035 1340946.7939598914 1481848.6895851842 1745860.4081756542 1755521.911132443 1918280.9878017919 1888610.7338954285 1661502.6591429561 1.357237264513003 0.9288723658978506 0.9947361580644932 0.8070687016845249 0.8918725958281392 1.050771961494309 1.0565868802388703 1.1545458427320774 1.136688360685273 1.0 20.66405717130945 2.292266029059752 2.6309081272226207 1.1091445046237554 0.982215915337093 0.07163038510696829 0.14149313345428616 0.5710481557952239 8.113813433692219 0.058728240318456366 0.0436784015196727 196.00449402950866 -2.292266029059752 -0.1269285892866624 KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 KDS(1)EEEVSLLGSQDIEEGNHQVEDGCR 198.19 2.6728e-25 477120000.0 159880.0 109240.0 110560.0 106910.0 115200.0 162610.0 136040.0 107180.0 192420.0 148020.0 True False 159019.2238443379 112875.98736302556 126125.88699525277 120444.79503827087 129870.0371561044 151369.15344276658 129459.2254767329 115178.31584901207 145000.6692959005 138573.23687370238 1.1475464341593629 0.8145583513063374 0.9101749359452843 0.8691779001167879 0.9371942236903206 1.092340460955867 0.9342296420103391 0.8311728761448159 1.0463829276648577 1.0 17.080289126155165 4.759588897492544 24.104458020042436 0.9292311253932433 1.1475467890459354 0.35215195706716995 0.0849474138520842 3575.3078299380386 4098223.9925473537 0.02048765043181578 0.866322584361905 57489.548448233305 -4.759588897492544 0.21831566365269217 KDS(ph)EGYSESPDLEFEYADTDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDSEGYSESPDLEFEYADTDK 21 1 Q5VSL9;Q5VSL9-4 Q5VSL9 STRIP1 Striatin-interacting protein 1 1 KDS(1)EGYSESPDLEFEYADTDK 298.87 3.2729e-55 342370000.0 578490.0 286280.0 268720.0 214080.0 277390.0 391440.0 422720.0 416740.0 603370.0 387670.0 True False 575375.4741162808 295808.6567400855 306553.4402438884 241182.50604988297 312713.97228065855 364380.67415064544 402271.4186527818 447839.2549628414 454677.5482437776 362928.56869901525 1.5853683720155205 0.8150602687478323 0.844666049142359 0.6645453867532292 0.8616405520282951 1.0040010778342292 1.1084038385151058 1.2339597749722604 1.2528017562068856 1.0 18.469326100551804 2.2412578209068785 2.6338157081467792 1.1841975646683913 0.9256916762169826 0.1227845060354712 0.238667255640949 0.4724695029219366 6.727315437152038 0.10173189317019263 0.07255605510058051 174.2841212003524 -2.2412578209068785 -0.25850588845140876 KDS(ph)ESAPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDSESAPVK 9 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 KDS(1)ESAPVK;KDS(0.969)ES(0.031)APVK 116.51 0.00079747 804920000.0 918120.0 660200.0 611780.0 569440.0 629560.0 847390.0 806710.0 702070.0 1334560.0 840210.0 True False 913176.9439327213 682174.3579006718 697913.3063129134 641531.0456140018 709730.734305531 788811.9238414979 767686.3553685314 754462.0284392234 1005675.570187803 786587.0784600278 1.1609356026042659 0.8672585357443524 0.8872676979124562 0.8155880806864826 0.9022913721072493 1.0028284794428937 0.975971226061201 0.9591589400582342 1.2785304993271749 1.0 19.585246961258246 1.3666482254395882 7.946145583198443 1.1383532603160296 0.9387494119216914 0.33477302247827356 0.10862116862256942 0.24268549008543894 15.755908841220505 0.07055158653422051 0.025753372778345017 23.262062885345582 -1.3666482254395882 -0.1996038483943382 KDS(ph)GSSSVFAES(ph)PGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 KDSGSSSVFAESPGGK 16 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 KDS(0.907)GS(0.038)S(0.048)S(0.007)VFAES(0.999)PGGK;KDS(0.965)GS(0.02)S(0.006)S(0.008)VFAES(1)PGGK;KDS(0.667)GS(0.26)S(0.055)S(0.018)VFAES(1)PGGK;KDS(0.612)GS(0.388)SSVFAES(1)PGGK 281.95 6.940699999999999e-29 1241903000.0 3362840.0 2429400.0 1846760.0 1946760.0 1967910.0 2703470.0 2259450.0 2196780.0 3655310.0 2148690.0 True False 3344734.843086649 2510261.1103966874 2106767.7556743226 2193219.6163942018 2218511.673783589 2516585.4821838504 2150151.771562806 2360714.878622814 2754507.8291445705 2011558.7646139425 1.6627577090588102 1.2479183579200361 1.0473309518644127 1.0903084985514324 1.1028818609777802 1.251062373346489 1.0688983137787984 1.1735749012909804 1.369339975346539 1.0 20.939882454033306 4.709532672760505 3.2530326698281558 1.1429890641009532 1.719346629379912 0.702489012644778 0.10209635661368524 0.15587204355420742 2.708531415369264 0.024050605852868914 0.21745223899785673 51230.98108097902 -4.709532672760505 0.5763575652789588 KDS(ph)GSSSVFAESPGGK ddPTM_BT-474_Trastuzumab_2h_R1 7 KDSGSSSVFAESPGGK 16 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 KDS(0.959)GS(0.033)S(0.006)S(0.001)VFAESPGGK;KDS(0.883)GS(0.077)S(0.015)S(0.025)VFAESPGGK;KDS(0.995)GS(0.005)SSVFAESPGGK;KDS(0.888)GS(0.112)SSVFAESPGGK;KDS(0.999)GS(0.001)SSVFAESPGGK;KDS(0.984)GS(0.012)S(0.001)S(0.003)VFAESPGGK;KDS(1)GSSSVFAESPGGK 267.38 2.7396999999999998e-27 16774040000.0 17325410.0 13232180.0 12284110.0 11072360.0 11186500.0 15663880.0 14815550.0 14222750.0 22009040.0 13459040.0 True False 17232131.917594016 13672605.11227827 14013605.912601802 12474119.640725339 12611034.467419831 14581072.844407354 14098865.24560283 15284123.826661112 16585206.998026453 12600072.544336136 1.3676216432055415 1.08512114229249 1.1121845420565506 0.990003795361685 1.0008699888865815 1.1572213408375729 1.1189511168283246 1.2130187165891744 1.3162786912271927 1.0 23.586928704210752 1.8067320870540189 4.9288225439200355 1.1982806815812592 1.108445267219702 0.031265490490348546 0.1221606175514705 0.523194361451712 21.992555581748068 0.05793242585181767 0.03235830137490992 64.08141412820538 -1.8067320870540189 -0.08983541436155718 KDS(ph)ISEDEMVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDSISEDEMVLR 12 1 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 KDS(0.998)IS(0.002)EDEMVLR;KDS(0.813)IS(0.187)EDEMVLR 211.9 1.6241e-08 713210000.0 510670.0 424460.0 373770.0 377670.0 384510.0 518100.0 493490.0 525280.0 732520.0 515900.0 True False 507920.6094607705 438587.8945085118 426393.56713292026 425482.98327662295 433475.06933067454 482284.96647621517 469618.00338512834 564479.0609177938 552000.2612651137 482974.8203157888 1.0516502891986608 0.9080968118001369 0.8828484409479703 0.8809630758771745 0.8975107005521545 0.9985716567188273 0.9723446929967753 1.1687546372473707 1.1429172661717504 1.0 18.881588451173922 1.9123409505333495 3.493865855728288 1.1187016702580563 0.9306912681949537 0.5568720859852172 0.06598429968490903 0.16047173062221293 3.439833591981865 0.03282326135025974 0.01827468212754824 81.72236954422117 -1.9123409505333495 -0.1880104020631026 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR ddPTM_BT-474_Trastuzumab_2h_R1 3 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR 41 1 Q96TC7;H0YLG5;H0YMB1;Q96TC7-2 Q96TC7 RMDN3 Regulator of microtubule dynamics protein 3 1 KDS(0.996)LDLEEEAAS(0.003)GAS(0.001)SALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR 247.9 2.3794e-55 825867000.0 15629.0 14281.8 12672.0 11761.5 13399.0 18066.6 15864.3 17006.5 19834.0 14597.8 True False 15544.855200545146 14757.161079469595 14456.107453001488 13250.504694066238 15105.283227904898 16817.698466201862 15096.883201488765 18275.61138725719 14946.176461983656 13666.155906194643 1.1374709396882352 1.0798326303873365 1.057803492966795 0.9695853599957837 1.1053059347184766 1.2306092936184547 1.1046912756677683 1.3372898357593856 1.0936635411285482 1.0 13.738319870117317 2.9696415580778353 7.981439505238449 1.1819737962368877 1.0591666724239337 0.14350507512777877 0.09378963738115674 0.33496233596569847 78.30140701562796 0.02778180975801745 0.030154757037690494 932.4843636425454 -2.9696415580778353 -0.122807123812954 KDS(ph)LTQAQEQGNLLN ddPTM_BT-474_Trastuzumab_2h_R1 6 KDSLTQAQEQGNLLN 15 1 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 KDS(0.969)LT(0.031)QAQEQGNLLN;KDS(0.995)LT(0.005)QAQEQGNLLN;KDS(0.996)LT(0.004)QAQEQGNLLN;KDS(0.999)LT(0.001)QAQEQGNLLN;KDS(0.999)LT(0.001)QAQEQGNLLN;KDS(1)LTQAQEQGNLLN 253.1 1.2311e-24 3695520000.0 6052830.0 4467050.0 3958790.0 4175150.0 4171450.0 5504970.0 5307670.0 4881150.0 7223390.0 5480760.0 True False 6020242.235812633 4615733.058861251 4516153.221580475 4703723.561912223 4702659.431378754 5124424.381205501 5050917.724831595 5245406.198977473 5443282.322967035 5130973.204485289 1.1733139106144583 0.8995823745145198 0.8801747819755981 0.9167312660686706 0.9165238725604491 0.998723668392175 0.9843976032492798 1.0223023956531583 1.0608674233981066 1.0 22.290801060677488 2.1437207346864224 1.593001570533028 1.0293735148047702 0.9495731330837496 0.1089876199731673 0.07934474488671686 0.7610936633950343 3.7228278178060696 0.04678273925233709 0.025893211753745673 139.22612463004722 -2.1437207346864224 -0.07980038172102066 KDS(ph)PHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDSPHSR 7 1 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;F8VWU8;F8VPY7;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3;Q8NEY8-5 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 1 KDS(0.979)PHS(0.021)R;KDS(0.994)PHS(0.006)R 71.524 0.033126 232090000.0 153192.0 121450.0 105096.0 105933.0 118818.0 130478.0 133735.0 125520.0 195528.0 144539.0 True False 152367.2312932314 125492.3898319248 119892.60328919222 119344.10693844495 133948.76801053833 121458.36297217444 127265.72713268793 134886.9397776452 147342.744340967 135314.3972739364 1.1260237961580133 0.9274134338999604 0.886029910375881 0.8819764145040643 0.9899077312473009 0.8976011822769221 0.9405187452082102 0.9968410050600467 1.0888918497170696 1.0 17.045955822773244 1.5388361388494276 3.718044238701593 1.0449121938860728 0.94386755938832 0.22228166707301467 0.07005007964490113 0.2593413969606826 7.942518779630677 0.04470316083271964 0.018070295631209148 34.580887805178314 -1.5388361388494276 -0.1010446344977528 KDS(ph)QNSSQHSVSSHR ddPTM_BT-474_Trastuzumab_2h_R1 6 KDSQNSSQHSVSSHR 15 1 A0A087WT53;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7;A0A087WXD2;H7C5T8;H7C4U7;H7C535;Q96QZ7-4;Q96QZ7-3;Q96QZ7-5 A0A087WT53 MAGI1 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 1 KDS(0.726)QNS(0.137)S(0.137)QHSVSSHR;KDS(0.916)QNS(0.042)S(0.042)QHSVSSHR;KDS(0.998)QNS(0.001)S(0.001)QHSVSSHR;KDS(0.998)QNS(0.001)S(0.001)QHSVSSHR;KDS(0.738)QNS(0.131)S(0.131)QHSVSSHR;KDS(0.777)QNS(0.155)S(0.068)QHSVSSHR 199.15 3.5562e-09 332676000.0 112939.90000000001 146427.0 157129.0 206593.0 190170.0 215907.0 197952.0 125329.3 215407.0 201571.0 True False 112331.84412720239 151300.73417800944 179251.39741024835 232747.65261754234 214387.02227410086 200981.85728040943 188376.30550992524 134682.0087752902 162322.83115591967 188706.5662063846 0.5952725778728192 0.8017777930023635 0.9498948606494417 1.2333839637725743 1.1360867116814053 1.0650496234487123 0.9982498717289033 0.7137113004747867 0.8601864493596394 1.0 17.525785098056545 4.501631063142877 2.4084535107737537 0.9865200375320358 0.5884639609992856 0.47061355496850277 0.134664309722968 0.3878964348032406 3.779862434785199 0.04127300072575551 0.2574986547092281 31741.764350940128 -4.501631063142877 -0.3980560765327502 KDS(ph)S(ph)DRENPPHDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KDSSDRENPPHDSR 14 2 Q92613 Q92613 JADE3 Protein Jade-3 2 KDS(1)S(1)DRENPPHDSR;KDS(1)S(1)DRENPPHDSR 108.71 0.00043425 374790000.0 156139.0 182131.0 182242.0 191412.0 212884.0 275380.0 279810.0 272530.0 322960.0 272540.0 True False 155298.36497267376 188193.12023448548 207900.08952413933 215644.7395740853 239993.51553767486 256343.62877479283 266274.5213219977 292867.57247929904 243370.83544228275 255146.26386676682 0.608664076122894 0.7375891670228683 0.8148270971065495 0.845180863344687 0.9406115218014539 1.004692856912266 1.0436152083380765 1.1478419007233813 0.9538483211706639 1.0 17.96096499078066 3.865826521268165 0.6287739038541027 1.0669228087727334 0.5611160485813458 0.8719829518652338 0.0540418697408818 0.461362630704642 0.2771437680885437 0.03077362157150964 0.14750453655752285 7342.2052552067 -3.865826521268165 -0.5058067601913876 KDS(ph)SDRENPPHDSR ddPTM_BT-474_Trastuzumab_2h_R1 6 KDSSDRENPPHDSR 14 2 Q92613 Q92613 JADE3 Protein Jade-3 1 KDS(0.992)S(0.008)DRENPPHDSR;KDS(0.943)S(0.057)DRENPPHDSR;KDS(0.936)S(0.064)DRENPPHDSR;KDS(0.935)S(0.065)DRENPPHDSR;KDS(0.953)S(0.047)DRENPPHDSR;KDS(0.805)S(0.195)DRENPPHDSR 147.25 4.2186e-06 1283355000.0 927061.0 1338266.0 1605618.0 1695574.0 1751226.0 2215156.0 2226335.0 2015836.0 2316210.0 2230648.0 True False 922069.8065821598 1382809.3748111199 1831675.0581181615 1910233.4945488817 1974234.250770278 2062027.4796363362 2118638.6706243884 2166267.918527799 1745411.081123887 2088286.1348861647 0.4415438053140276 0.6621742833562886 0.877118814092978 0.9147374311581162 0.9453849344634452 0.9874257388337926 1.0145346632490466 1.037342480198905 0.8358103096916035 1.0 20.993887971413443 4.7131768329328425 0.9742716793592703 0.9820679443904257 0.15170825612064606 0.9107292429965769 0.05304766352122965 0.48885722153448496 0.3799358931455772 0.016652218929425044 0.4245205163127811 51662.66828239844 -4.7131768329328425 -0.8303596882697796 down KDSAAGPHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDSAAGPHGR 10 1 A0AVG3;A0A590UJA6;E5RHW3;Q96NA8-2;Q96NA8;E5RI41 A0AVG3;E5RI41 TSNARE1 t-SNARE domain-containing protein 1 0 87.363 0.0083917 8340100.0 18777.0 23500.0 19321.0 19712.0 18890.0 22577.0 21414.0 23170.0 25458.0 25537.0 False True 18675.906718320828 24282.183293950016 22041.228858857456 22207.537178883114 21295.52953019805 21016.305130541412 20378.12301057599 24899.06305487604 19184.217019722673 23907.20679667434 0.7811831334858732 1.0156846636440957 0.9219491447208105 0.9289055542018542 0.8907577414338679 0.8790782339936477 0.852384102579927 1.0414877516489995 0.8024449356581184 1.0 14.54515796187901 -2.2099567943226806 2.081540515178662 1.2385191745775148 0.91278601738616 0.10861876636303502 0.07890526466454852 7370778.20844715 1283097.5422803138 8279875.496077604 0.018732306159684565 0.006166563467115742 2.2099567943226806 -0.32573315719135476 KDSETGENIR ddPTM_BT-474_Trastuzumab_2h_R1 3 KDSETGENIR 10 1 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;; 170.52 6.896900000000002e-06 3161120000.0 2131490.0 2353750.0 2193920.0 1837730.0 2717320.0 4613100.0 2468040.0 2428390.0 3692860.0 3142090.0 False True 2120014.294670801 2432093.145878081 2502804.8661055113 2070386.4295733003 3063354.595182519 4294207.255069348 2348651.476371621 2609608.792914559 2782804.134788795 2941559.126121413 0.7207110935982245 0.8268041000028827 0.8508429573556048 0.7038398144671001 1.0414050725615362 1.4598405372634704 0.798437622931085 0.8871515686157407 0.9460303245571867 1.0 21.48814960442117 3.230512332698307 24.967942980590035 1.0124532663641932 0.7845886353262698 0.33820313918046196 0.1684744553992492 239.24657514556222 742206.3814017829 0.05241618854692387 0.06369450577567638 1700.2482350543548 -3.230512332698307 -0.22786463103792343 KDSGS(ph)SSVFAESPGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDSGSSSVFAESPGGK 16 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 KDS(0.174)GS(0.744)S(0.074)S(0.008)VFAESPGGK 255.22 1.4085000000000002e-26 197970000.0 373080.0 298640.0 241240.0 244430.0 225490.0 326230.0 318810.0 314280.0 445000.0 292990.0 True False 371071.37873308477 308580.0518683078 275204.49510433065 275374.81293802755 254204.81491605937 303678.4879628172 303387.9423275298 337733.169481504 335335.7126945006 274291.1273586407 1.3528377031601977 1.1250092368639897 1.0033299208563013 1.0039508590373392 0.9267700977570517 1.1071393044578943 1.1060800444005774 1.231294547270979 1.2225539918979695 1.0 18.06534842975199 1.952611062715943 5.429892110751374 1.1760003157286618 1.0756680081836105 0.03751651796385591 0.1220836006252435 0.4731652406426566 32.65328069201083 0.05526155061282486 0.03405499720308245 89.66254518744022 -1.952611062715943 -0.10033230754505129 KDSGSSSVFAES(ph)PGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDSGSSSVFAESPGGK 16 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 KDSGSSSVFAES(1)PGGK 171.68 2.964e-09 255880000.0 388090.0 301940.0 246260.0 256000.0 307390.0 395540.0 310950.0 320210.0 578400.0 407630.0 True False 386000.5665608529 311989.8903734157 280931.26746970846 288409.573751729 346534.29445672716 368197.2508010073 295908.16055564565 344105.6961934334 435861.0701629199 381614.7044103995 1.0114929065881506 0.8175520669609544 0.7361646818713433 0.7557611654334079 0.9080737467706542 0.9648403128749393 0.7754107929693859 0.9017097407844437 1.14214956899088 1.0 18.54175723689986 1.3769458130687713 5.304096310582589 1.0673876257654966 0.8493144830269379 0.47447246901075624 0.0903375428109269 0.17468308216438275 6.937043316038319 0.0643380192160268 0.022960748568977733 23.820222458533326 -1.3769458130687713 -0.2180731427385587 KDSLSVNEFK ddPTM_BT-474_Trastuzumab_2h_R1 3 KDSLSVNEFK 10 1 Q99584 Q99584 S100A13 Protein S100-A13 0 ;; 184.44 2.4984e-06 3166971000.0 6289550.0 5914520.0 5853930.0 5057160.0 5160050.0 7973670.0 7095370.0 6870260.0 10460840.0 7479710.0 False True 6255687.761634705 6111381.222797153 6678112.460728296 5697395.93747771 5817151.781487475 7422468.96090022 6752139.846154407 7382953.687673405 7882906.150074462 7002348.504098102 0.8933699540909144 0.8727616483556175 0.9536961002183698 0.8136407284132354 0.830742968317416 1.0599970790594389 0.9642678941504751 1.0543539333057408 1.1257517596362159 1.0 22.739407435235428 2.733902564327705 24.998027379983487 1.0386332648524157 0.874040702487798 0.7191108078414472 0.0524966822418141 222.87592498663824 1196088.1001353357 0.017123915060140295 0.016635379873327836 541.8793040133693 -2.733902564327705 -0.16459256236461772 KDSNELS(ph)DS(ph)AGEEDSADLKR ddPTM_BT-474_Trastuzumab_2h_R1 3 KDSNELSDSAGEEDSADLKR 20 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 2 KDS(0.041)NELS(0.96)DS(0.999)AGEEDSADLKR;KDS(0.012)NELS(0.981)DS(0.94)AGEEDS(0.067)ADLKR;KDSNELS(1)DS(1)AGEEDSADLKR 121.94 1.6822e-05 1938130000.0 4812500.0 3039390.0 2597580.0 2552810.0 2836770.0 4358210.0 4106570.0 4676690.0 7964860.0 4170830.0 True False 4786590.034719016 3140554.258799948 2963296.6854298934 2875995.4842544924 3198015.8446469004 4056937.20082282 3907919.520479172 5025688.355550627 6002026.976655998 3904644.058572787 1.2258710302184614 0.8043125600410996 0.7589159577615964 0.7365576582941384 0.819028776163487 1.0390030794012244 1.0008388631222849 1.287105375076775 1.537150861031323 1.0 21.89675960979468 1.994770709780567 1.7256476638075033 1.3095421790955128 0.8643157093658199 0.45266921053560794 0.18387250285320197 0.2951903096033132 1.639592842233349 0.11329442615285014 0.05601813756551801 98.80313156780072 -1.994770709780567 -0.44522646972969293 KDSNELS(ph)DSAGEEDSADLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDSNELSDSAGEEDSADLKR 20 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 KDS(0.002)NELS(0.998)DSAGEEDSADLKR 129.93 8.8926e-06 363730000.0 581040.0 457720.0 356600.0 391880.0 397130.0 550570.0 586830.0 549490.0 807100.0 591960.0 True False 577911.7451996128 472954.9335024171 406806.1803772359 441491.9678196382 447702.15152607474 512510.39180237363 558442.7909917023 590495.7340536829 608201.019585913 554180.6059975466 1.042822031202895 0.8534310446520947 0.7340678760220579 0.796657196303244 0.8078632609674125 0.9248075198875555 1.0076909674355776 1.0655294098406198 1.0974779936427541 1.0 19.079996697849534 2.31508125932476 2.1776902331792947 1.057796021375413 0.8388200272058359 0.580561706646217 0.07851331047575995 0.21720306494955083 2.1108675793771283 0.035940424545808196 0.025979108975213976 206.57666380385587 -2.31508125932476 -0.21897599416957703 KDTFFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KDTFFK 6 1 Q96KP4;Q96KP4-2;J3QKT2;J3QRH4;J3QRA8;J3KRJ8 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 95.541 0.069313 1274000000.0 1338300.0 1258600.0 1099200.0 1143000.0 1075800.0 1422300.0 1343100.0 1367000.0 1919200.0 1512500.0 False True 1331094.741499109 1300491.7401602324 1253957.805582324 1287703.6828055691 1212796.7532338311 1323979.7487340684 1278129.1218597444 1469012.481485348 1446238.875962438 1415970.9550836007 0.9400579416690926 0.9184452092687521 0.8855815870236469 0.9094139100681917 0.8565124509649465 0.9350331261956563 0.9026520757865983 1.0374594734526992 1.0213760888033543 1.0 20.433360241957928 1.749299909665174 7.0719519921679765 1.0210292157952268 0.9055796536945341 0.8205545365083554 0.024137351529773043 0.05241953786974446 8.015554277085998 0.01166486723986231 0.006220681067060595 56.14355513523407 -1.749299909665174 -0.11544956210069268 KDVFFYQADDEHYIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KDVFFYQADDEHYIPR 16 1 P23258;K7EIS0;Q9NRH3;K7EKE5 P23258 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma chain;Tubulin gamma-2 chain 0 81.346 0.0084619 60548000.0 36894.0 58080.0 38175.0 48142.0 41710.0 44813.0 42847.0 20560.0 51989.0 25431.0 False True 36695.36680330874 60013.157689898566 43549.70817695168 54236.77226388952 47021.521265461124 41715.182788455146 40774.326918564926 22094.291601564575 39177.00756690874 23807.971807425507 1.5413058743569144 2.5207169336104878 1.8292069786208707 2.2780929304937065 1.9750326338506292 1.7521518895382986 1.7126333670240552 0.9280207394513779 1.6455415809375984 1.0 14.539157102719612 2.148199970011102 1.6352132405108186 1.1840919746704108 2.0527673950779772 0.5568900805312371 0.3131986124503615 0.24997742638230133 1.2926018140343674 0.16806404313604012 0.09414990128260556 140.66950849259408 -2.148199970011102 0.8686754204075664 KDVGRPQPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 KDVGRPQPGR 10 2 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 ;;;; 150.09 1.2476e-05 2456200000.0 1562330.0 1553660.0 1400900.0 1241390.0 1247909.0 1525457.0 1475180.0 1345802.0 1827270.0 1658320.0 False True 1553918.5888711815 1605372.6338926961 1598134.543158914 1398549.8467174156 1406822.8142138645 1420005.7481295269 1403819.907665148 1446232.5790840867 1376963.7926635516 1552484.5978408174 1.0009236748837047 1.0340667057988433 1.0294044432914735 0.9008461975484375 0.9061750539557442 0.9146665610109491 0.9042407954433614 0.931560017468447 0.8869419990244163 1.0 20.566147524901076 3.741648794829342 24.9805634256995 0.916899795884753 1.022725124549713 0.6977466622685107 0.030339018869228553 123.75859690460506 1001090.6000786647 0.0071585768894818 0.01227010283557076 5516.311658832575 -3.741648794829342 0.10582532866496008 KDVHMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDVHMPK 7 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 0 ; 84.476 0.013968 2132200000.0 8664400.0 8533400.0 8151800.0 7074800.0 7321600.0 9296700.0 9427600.0 8793100.0 13549400.0 9986300.0 False True 8617751.833105346 8817429.06045076 9299502.5832842 7970468.954604414 8253962.3614768665 8654041.011077845 8971550.971070612 9449285.77245708 10210331.922658136 9348965.784298427 0.921786648056713 0.9431448637088413 0.9947092328546863 0.8525508744497498 0.8828743790398059 0.9256682729133839 0.9596303139902722 1.0107305974236358 1.092134911843016 1.0 23.15637534711705 1.764743744802812 2.124133234522251 1.0466727488001266 0.9204826279976973 0.6112742404916472 0.040991854040039424 0.19962299593837943 1.8032707845662337 0.028106354882585675 0.012157475975890258 58.17598494303098 -1.764743744802812 -0.1261901208024293 KDVLETFTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDVLETFTVK 10 1 A6NNI4;A0A2R8Y478;G8JLH6;P21926 A6NNI4 CD9 Tetraspanin;CD9 antigen 0 ; 156.69 1.6833e-05 1477920000.0 2004880.0 1984460.0 2073700.0 1558380.0 1780100.0 2642400.0 2247200.0 1869440.0 3029700.0 2158500.0 False True 1994085.948843106 2050511.5514685954 2365658.9350764826 1755670.748215701 2006785.1835206754 2459737.107540532 2138494.3508623512 2008947.1056239726 2283071.0309000625 2020742.6820151743 0.9868084475033283 1.0147316477839396 1.1706878644822518 0.8688244989534581 0.99309288677934 1.217244100118464 1.058271481022883 0.9941627518950416 1.1298177898748012 1.0 20.946454192370062 KDWDDDQND ddPTM_BT-474_Trastuzumab_2h_R1 4 KDWDDDQND 9 1 P50990-2;P50990;P50990-3;H7C2U0 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;; 121.5 0.012548 10659500000.0 11983700.0 10207700.0 9132400.0 8887600.0 9129100.0 11429800.0 12073200.0 11023100.0 15271000.0 11840900.0 False True 11919181.090714235 10547457.123815054 10418162.539756207 10012769.248733854 10291636.77258501 10639684.828855123 11489173.19189718 11845699.696167639 11507666.670916215 11085203.62449547 1.0752333916876264 0.9514897047545311 0.939825996225701 0.9032553291676293 0.928412063612717 0.9598095974839953 1.0364422324646378 1.0686046100219273 1.0381105355148559 1.0 23.402131935576133 2.2310739681163874 4.910275113231265 1.0452348695217535 0.9539113380551327 0.39286126109062214 0.045597277981119406 0.1673425220104031 10.77252934134705 0.017435746726743973 0.013401729663478436 170.24484411168473 -2.2310739681163874 -0.09132353146662076 KDWYDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KDWYDVK 7 1 P61247;E9PFI5;D6RG13;H0Y8L7;H0Y9Y4;D6RI02 P61247 RPS3A 40S ribosomal protein S3a 0 ; 103.78 0.013306 3406500000.0 6941300.0 6314100.0 5597300.0 5145800.0 4919500.0 7075000.0 7171500.0 5979600.0 9213800.0 6837000.0 False True 6903928.812050926 6524261.001545948 6385351.187396237 5797257.752389234 5545969.164839034 6585921.902758576 6824587.14720957 6425828.115793553 6943182.448594589 6400656.806549806 1.0786281815619485 1.0193111736391893 0.997608742412512 0.9057285724891369 0.866468759762878 1.028944700803078 1.0662323185686124 1.0039326134808524 1.0847609328920143 1.0 22.609788524895063 2.510094030932255 24.903857516708275 1.0376814347131056 0.9710649089674017 0.2208538188213911 0.05949943833968361 992.7155934127082 749782.7622470527 0.020722763497102767 0.019524116240180505 323.663727144116 -2.510094030932255 -0.06661652574570387 KDYEEIGPSICR ddPTM_BT-474_Trastuzumab_2h_R1 4 KDYEEIGPSICR 12 1 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 ;;; 185.95 1.9866e-05 5325870000.0 2640730.0 2607090.0 2439230.0 2404360.0 2286520.0 2660840.0 2427470.0 2313400.0 3218010.0 2560960.0 False True 2626512.603092684 2693865.4146308135 2782652.381832765 2708751.729475414 2577694.7687341687 2476902.3937436263 2310044.002264075 2486037.655207173 2424974.554624784 2397517.340251833 1.0955134959803032 1.1236062277438428 1.1606391057594927 1.1298152818327016 1.075151668543682 1.033111357385826 0.963515034273508 1.0369216578621456 1.0114523527784232 1.0 21.193109819022162 2.9020251847175906 2.148490808772848 1.0076535640192654 1.129539452787195 0.8526250611228146 0.023342676966076233 0.11504006555512306 1.05140657073706 0.008177940133797782 0.009003926853487507 798.0409642860054 -2.9020251847175906 0.1218858887679295 KEAAENSLVAYK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEAAENSLVAYK 12 1 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 135.37 0.00020673 680350000.0 1327600.0 1367100.0 1284200.0 1103700.0 1084600.0 1570500.0 1532400.0 1284400.0 2041100.0 1561000.0 False True 1320452.349110226 1412603.0970705978 1465004.1975334997 1243428.3068350903 1222717.3810721424 1461935.0315593416 1458271.957663521 1380248.4500510471 1538098.254338753 1461375.6435606643 0.9035680558442342 0.96662559232804 1.0024829714309418 0.8508615237390011 0.8366893115126599 1.0003827817995614 0.9978761888424654 0.9444857358427369 1.0525002665236385 1.0 20.47889563688652 2.6746531963787077 24.999969163106154 0.9913202687811062 0.9167024560126 0.40773477819810133 0.05186249967881322 266.76743028976256 104356.39975492434 0.01800383249045605 0.016974177336937953 472.7735772789865 -2.6746531963787077 -0.07461781276850621 KEAEDSLRR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEAEDSLRR 9 2 O43776;K7EIU7;O43776-2;K7EJ19;K7EPK2;K7EMQ6 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;; 169.37 3.2911e-05 1072060000.0 2133300.0 2400660.0 2147570.0 2238380.0 2166380.0 2470210.0 2542340.0 2277780.0 3425980.0 2672050.0 False True 2121814.5498319115 2480564.516870385 2449929.18898693 2521758.678493728 2442255.6518597356 2299450.196948874 2419357.3015180617 2447759.5099324803 2581693.134780014 2501517.481342901 0.8482109622087662 0.9916238984421297 0.9793772009427347 1.0080915673393418 0.9763096480735559 0.9192221178140436 0.967155864215375 0.9785098557929879 1.0320508067743233 1.0 21.254372103669017 4.741502566990769 24.88198911037143 0.980500938147969 0.8482109107546825 0.6756204593807147 0.028068746208106055 159.65249524453094 1350212.981908641 0.006884600957172248 0.04828744334253263 55144.5461808896 -4.741502566990769 -0.13229002739328655 KEAEQEAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEAEQEAAR 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 90.685 0.015750999999999998 0.0 72821.0 73223.0 71914.0 75801.0 75252.0 68901.0 85529.0 62450.0 99076.0 76967.0 False True 72428.93982717372 75660.18329076172 82038.8661123066 85397.39882794836 84834.89614645118 64138.03604550792 81391.63551749095 67110.33611467452 74660.04735038275 72054.9001652361 1.0051910371269666 1.0500352247696962 1.138560540978827 1.1851712878945815 1.1773647031903178 0.8901273320541246 1.129578076311866 0.9313778238645432 1.0361550314992114 1.0 16.136808925198576 2.753063636126103 24.996295987140332 0.9991403529772271 1.1134852991783248 0.3485302231054832 0.0777574583361433 927.1909452806194 1598034.0760325773 0.02390270374861372 0.02525113095353411 566.3222647986343 -2.753063636126103 0.1143449462010977 KEAEQLCHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEAEQLCHR 9 1 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 0 ; 90.108 0.007564699999999999 177110000.0 265530.0 349080.0 306560.0 316590.0 298090.0 338650.0 328950.0 309220.0 354500.0 339800.0 False True 264100.4159831564 360698.9167766839 349720.9833327124 356670.26153929613 336049.9945821461 315239.9225963525 313037.4317889684 332295.5665873442 267138.2250566299 318113.6730825841 0.8302076846429498 1.1338680078773111 1.0993585404357102 1.1212038076926751 1.0563833717858007 0.9909662780025003 0.9840426812075509 1.0445812132730252 0.8397571297957989 1.0 18.27918285720547 2.710167032250319 4.296446405449387 0.9803997519778235 1.060266747410964 0.13388366044796285 0.09375418625006318 0.43272518063907284 19.137459341461284 0.03012011374809024 0.029340587949454183 513.0586714777833 -2.710167032250319 0.07986699543314046 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK 33 1 Q3ZCM7;A0A075B736;Q5SQY0 Q3ZCM7 TUBB8 Tubulin beta-8 chain 0 ; 340.59 8.525299999999995e-118 5432700000.0 2277700.0 2466300.0 2516900.0 2446900.0 2472800.0 3242800.0 3470200.0 2704500.0 4625700.0 3448200.0 False True 2265437.1162762586 2548389.304590167 2871257.642713026 2756677.289113691 2787696.422566105 3018632.868730107 3302333.168548651 2906323.523172734 3485758.2162043853 3228132.9238474523 0.7017793782717584 0.7894313414928613 0.8894483933737511 0.8539540824818773 0.8635630837789626 0.9351017879190512 1.0229854985688642 0.9003109821477953 1.0798062838285736 1.0 21.62226855457781 6.454253581993439 0.26131801078034333 1.0237785006142788 1.0672180865582594e-20 0.7794707752771405 0.050059067622417616 10.422576125389776 0.2908086552471273 0.061497299662777505 4.038650644070319 2846122.456536054 -6.454253581993439 -1.0237785006142788 KEAESSPFVER ddPTM_BT-474_Trastuzumab_2h_R1 3 KEAESSPFVER 11 1 P14625 P14625 HSP90B1 Endoplasmin 0 ;; 142.39 6.0412e-05 5656120000.0 3393540.0 4029640.0 3890230.0 3581300.0 3623900.0 4170150.0 4573540.0 4074570.0 5238410.0 3781340.0 False True 3375269.5576977343 4163764.131431176 4437940.569514679 4034692.2128010415 4085382.184461867 3881877.345977205 4352300.397580541 4378635.103647226 3947474.0465977476 3540011.6438319543 0.9534628406035717 1.1762006881209093 1.2536514045786424 1.13973981408536 1.1540589680206716 1.0965719145983348 1.2294593451871556 1.2368985032228559 1.1151019950670917 1.0 21.755322674963235 4.739558477635246 24.245323502983304 1.1701619240919234 0.9534627430252173 0.3948811965138844 0.07318735680712526 50.38112754734763 1223849.2911597148 0.016719425223026538 0.1022859968874449 54898.24709727357 -4.739558477635246 -0.21669918106670616 KEANQAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEANQAPK 8 1 Q96AG4 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 0 85.73100000000002 0.031570999999999995 0.0 79931.0 97385.0 114760.0 63287.0 87324.0 77594.0 98221.0 78077.0 161400.0 112730.0 False True 79500.66037716891 100626.4008545244 130917.21048819843 71299.12771103767 98444.1937901014 72230.10941662895 93469.67498934262 83903.50220697268 121625.13264919634 105535.4748869913 0.7533074585801524 0.9534841337690136 1.2405043008370995 0.675593944002106 0.9328066595191491 0.6844154488713283 0.8856706722496024 0.7950265282533442 1.152457339860687 1.0 16.68736850503561 1.2391331571749626 24.99999359565517 1.0762286999576083 0.8678211746658461 0.220855776265534 0.15855462175132418 22.542576573287025 984722.2574299166 0.12039683261641976 0.037911088394777734 17.34335673491022 -1.2391331571749626 -0.2084075252917622 KECSEAMEVETSVISIDS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 3 KECSEAMEVETSVISIDSPQK 21 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 KECSEAMEVETSVISIDS(1)PQK;KECSEAMEVETSVISIDS(1)PQK;KECSEAMEVETSVISIDS(1)PQK 219.93 2.9848e-25 1036410000.0 1248140.0 973020.0 929550.0 849110.0 810870.0 1256280.0 1197890.0 1203160.0 1758920.0 1262140.0 True False 1241420.152921391 1005406.3824969892 1060422.5602065595 956607.2389387902 914129.4880969664 1169436.3205650258 1139943.4843158145 1292945.9087226866 1325457.7343204732 1181589.144627581 1.0506360510892032 0.8508933812301384 0.8974545551878684 0.8095937943305144 0.7736441150067321 0.9897148479081657 0.9647545337555614 1.0942432186360376 1.1217585574029942 1.0 20.17229704642315 2.174693394750419 1.8217407790916615 1.07667694964266 0.8759873924868717 0.5015286164120629 0.07983094957126521 0.2711064749439892 1.7700554028107098 0.04265944915352094 0.0253928744045215 149.51797094328114 -2.174693394750419 -0.2006895571557883 KEDAENLAAAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEDAENLAAAQR 12 1 Q9Y6D6;E5RIF2;E5RHL7;E5RHZ1 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 188.09 1.5461e-05 265930000.0 328260.0 339090.0 302290.0 292040.0 275340.0 329870.0 352360.0 315630.0 419910.0 364820.0 False True 326492.68463311443 350376.40566576674 344849.80444821797 329012.234056464 310402.91693196027 307066.8633304554 335315.0006540836 339183.91333666473 316428.8070057254 341536.87526188383 0.9559514895214937 1.0258816281466092 1.0097000629398916 0.9633285829068495 0.9088415905133211 0.8990738206379691 0.9817827149615121 0.9931106650682597 0.9264850442960044 1.0 18.381681827140746 3.6330217762489707 5.173239303995563 0.9525296004848566 0.9997907955565419 0.24132283537538224 0.03596545681613192 0.32957835712481764 13.172191697401257 0.01034746388320192 0.01626726056083125 4295.579649770216 -3.6330217762489707 0.04726119507168536 KEDDLDSLINEILEEPNLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEDDLDSLINEILEEPNLDK 20 1 Q96NL8 Q96NL8 C8orf37 Protein C8orf37 0 118.52 0.00010311 10927000.0 42694.0 29596.0 25089.0 22149.0 20358.0 38611.0 37054.0 35311.0 47581.0 33493.0 False True 42464.1402477493 30581.084968840212 28621.31312250271 24953.061129011872 22950.47062868036 35941.91245051754 35261.55645997397 37946.08612562484 35855.300102734895 31355.44806520006 1.3542826803000867 0.9753037145331284 0.9128019176440397 0.7958126153108972 0.7319452294528684 1.1462732848141879 1.1245751100941566 1.2101911618906005 1.143511010532457 1.0 14.936428515201053 2.602923497144289 23.50583784090307 1.143690051599051 0.943616420706783 0.2120473589446299 0.16207823921436312 13.21350212702359 2418.1323318944565 0.05444257732810881 0.05132894832139706 400.7961094363348 -2.602923497144289 -0.20007363089226793 KEDEVEEWQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEDEVEEWQHR 11 1 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 226.73 2.9343e-12 1295070000.0 1960610.0 1702300.0 1617640.0 1422760.0 1472280.0 2215700.0 1923880.0 1754570.0 2454500.0 2058020.0 False True 1950054.293604249 1758960.026437921 1845389.651221063 1602881.2701211316 1659766.1311127564 2062533.8741967753 1830814.5744646902 1885504.9229259312 1849621.3636149473 1926675.401640432 1.012134317977959 0.9129508919563135 0.9578103554183752 0.8319415241178603 0.8614664046157331 1.0705144584503798 0.9502454709837875 0.9786313363011502 0.9600067359764501 1.0 20.877682102094422 2.7554227535262177 24.994775933931017 0.9861189274751182 0.9128674071033452 0.3226260746948987 0.05514070112225901 1068.6823095352345 1584107.8975143097 0.01715481256913161 0.018154498616808994 569.4069366564777 -2.7554227535262177 -0.07325152037177296 KEDGTFYEFGEDIPEAPER ddPTM_BT-474_Trastuzumab_2h_R1 4 KEDGTFYEFGEDIPEAPER 19 1 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;; 237.09 5.2808e-24 14581700000.0 10399050.0 10717200.0 10077980.0 9824190.0 9946620.0 11695780.0 11571930.0 11224870.0 14718800.0 12306800.0 False True 10343062.67024308 11073915.523315782 11496871.984627519 11067931.446703106 11213263.098764356 10887278.257504692 11012151.536834534 12062526.798134927 11091548.96181531 11521369.487618413 0.8977285800406267 0.9611631269369936 0.9978737334118812 0.9606437375866993 0.9732578328309697 0.9449639011408189 0.9558023070667844 1.0469698772440268 0.9626936254179667 1.0 23.457808877134735 4.694751744080614 2.9794316535055563 0.9818918602600895 0.8879239412234928 0.4385058937449382 0.02791927448738743 0.33061317400287277 4.504666816942209 0.0074208056088060385 0.0699875764597925 49516.70573558833 -4.694751744080614 -0.09396791903659663 KEDIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEDIFR 6 1 P49756;P49756-2;P49756-3;H0YE46 P49756 RBM25 RNA-binding protein 25 0 107.66 0.049833 400650000.0 259620.0 297090.0 249850.0 232650.0 226870.0 266550.0 290520.0 266990.0 344680.0 288890.0 False True 258222.23476649352 306978.46105530235 285026.70826486865 262103.46614585805 255760.54973615854 248124.02589120824 276466.4377058249 286914.1495477496 259738.23247537165 270452.7928688277 0.954777475312425 1.1350537659420288 1.0538870951985675 0.9691283397948892 0.9456753876459503 0.917439318186486 1.0222354695368736 1.0608659149136825 0.9603828813161759 1.0 18.045017270198525 3.7509026039113675 22.22993581739642 0.9875313356983977 1.0566209227826324 0.21771325409503905 0.055686262780763815 267.3924999543393 481610.47045982257 0.015148357561000702 0.026987774850881753 5635.112670500101 -3.7509026039113675 0.06908958708423474 KEDIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEDIQK 6 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 92.467 0.074917 1260670000.0 1196050.0 1032950.0 951290.0 859010.0 812050.0 765250.0 1156850.0 1066320.0 1627210.0 1088570.0 False True 1189610.5996936476 1067331.1163185383 1085223.3632390911 967760.5779237193 915459.754102559 712350.0687047358 1100888.7459038408 1145894.213063245 1226205.8989968947 1019096.5306283341 1.1673188593431687 1.047330732899723 1.0648877026104542 0.9496260156307635 0.8983052405625629 0.6990015639298951 1.080259536577047 1.1244216603865116 1.2032284107972238 1.0 19.95885928192987 -0.4452408951492866 8.134295519311486 0.9999999960270317 1.022048163324383 0.002385845128223485 0.13971026172544326 0.0 0.0 0.14509530519095826 0.034199291151481515 0.3587229024641448 0.4452408951492866 0.022048167297351262 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPK 33 2 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4;A8MXE8;Q7Z5J4-4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK;KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK;KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK 238.74 7.169299999999998e-47 390347000.0 212771.0 148173.0 147486.0 127833.0 121709.0 204621.0 218078.0 193288.0 317947.0 203203.0 True False 211625.4645770803 153104.84873253014 168250.74682870696 144016.64469298726 137207.9197242388 190476.031896023 207528.73400113918 207712.1320565763 239593.22212152462 190234.41056915928 1.1124457659574913 0.8048220523009386 0.884439078741434 0.7570483397935535 0.7212571022967329 1.001270124191206 1.0909105948825835 1.0918746584023662 1.2594631087230197 1.0 17.537418706267694 2.468601580521828 3.739969679709361 1.1123179978344122 0.848907591082815 0.5176504476173719 0.11563203928967648 0.17612528005263395 5.434991802553288 0.04078694758445037 0.03519785872016822 294.17216754997486 -2.468601580521828 -0.2634104067515972 KEDLELIMTEMEISR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEDLELIMTEMEISR 15 1 Q9NX55 Q9NX55 HYPK Huntingtin-interacting protein K 0 ;;; 188.27 4.910999999999999e-07 492417000.0 923169.0 974634.0 870351.0 817114.0 881826.0 1060547.0 1058660.0 991325.0 1299786.0 1081549.0 False True 918198.7606777173 1007074.1035113053 992888.855573493 920560.5486194135 994121.3141078037 987233.8821491044 1007448.5713260653 1065302.7053463517 979471.1565400772 1012523.6168593148 0.906841821157537 0.9946178901338488 0.9806080954963543 0.9091743968153988 0.9818253101013169 0.9750230668311173 0.9949877262626313 1.0521262789412746 0.9673563561689937 1.0 19.949524128213735 2.408207048530021 1.8643648449879109 1.0135052950883543 0.9553608433996754 0.3189442916130045 0.033478616882395465 0.37039163393889113 2.6252037270084245 0.01477815296328778 0.011136922819827012 255.980597550367 -2.408207048530021 -0.05814445168867888 KEDLVFIFWAPESAPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEDLVFIFWAPESAPLK 17 1 G3V1A4;E9PQB7;P23528;E9PP50;E9PK25;Q9Y281;Q9Y281-3 G3V1A4;P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 ; 176.11 1.8367e-09 22757000000.0 8064300.0 7361500.0 7519700.0 6688300.0 4954800.0 8643300.0 9522700.0 9033400.0 11546900.0 8690100.0 False True 8020882.704827966 7606523.077379281 8578408.39759589 7535038.094233148 5585764.410599545 8045809.015139685 9062050.620753342 9707518.178675752 8701321.215532877 8135490.37803108 0.9859126287565163 0.934980280711755 1.0544426947834462 0.9261934737923873 0.6865922213715887 0.9889765264631658 1.1138911362029666 1.1932308598003811 1.0695509196384467 1.0 22.95579787829898 2.341355192352833 4.344917327593025 1.1192328110556578 0.9194655178451534 0.3964138640770083 0.10013267577571351 0.20201885916271645 6.77735904664559 0.03772991945696475 0.030873241510112056 219.45990777265365 -2.341355192352833 -0.19976729321050435 KEDLYLKPIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEDLYLKPIQR 11 2 P13639 P13639 EEF2 Elongation factor 2 0 ; 184.03 2.8612e-06 15932200000.0 13190800.0 13311400.0 12668900.0 12330000.0 11910100.0 15538600.0 15256200.0 13825700.0 20825000.0 16194500.0 False True 13119782.19843565 13754461.902088776 14452570.999947172 13890976.735776614 13426780.638306605 14464453.15592998 14518199.321656372 14857443.939482057 15692957.790703306 15160953.145190984 0.8653665816912844 0.9072293654869356 0.9532758832205408 0.9162337356199005 0.8856158652904712 0.954059617321492 0.957604656027943 0.9799808624957594 1.0350904484973673 1.0 23.853857120531508 1.9806891013343582 1.0503032114561068 1.0155005587474175 0.9084347422864083 0.7405114284446288 0.025365103778315794 0.2748431483154925 0.5578824457297146 0.020619810862170462 0.009533197905635834 95.65090893776535 -1.9806891013343582 -0.10706581646100921 KEDMEYALR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEDMEYALR 9 1 Q13242;H0YIB4 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 ;;; 152.04 0.00013055 9593500000.0 7253400.0 7932300.0 7214600.0 6551620.0 5903520.0 7678900.0 7901000.0 6848300.0 9750100.0 7567500.0 False True 7214348.500328491 8196321.810323383 8230352.9695726475 7381054.4202472605 6655298.279095533 7148075.717186271 7518798.445248934 7359354.920962768 7347318.499646399 7084535.671137301 1.0183234068140914 1.1569314053587938 1.1617349889426705 1.0418543660268362 0.9394120642527781 1.0089688370555934 1.0612972810456496 1.0387914272130905 1.0370924561195571 1.0 22.756241869623487 3.572051251781999 6.2538214108120735 1.0183275306884034 1.1158298218653169 0.4577466264250464 0.047549310937120254 0.21483697545711786 11.762135767669747 0.013100098807886274 0.020350369133295004 3732.94208239199 -3.572051251781999 0.09750229117691345 KEDMTYAVR ddPTM_BT-474_Trastuzumab_2h_R1 5 KEDMTYAVR 9 1 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;; 169.65 9.3483e-05 11598410000.0 13948710.0 14801200.0 14853000.0 13073850.0 11228750.0 14045210.0 14720200.0 12797420.0 20002400.0 15364700.0 False True 13873611.695207369 15293848.994485648 16944173.295409642 14728998.06950795 12658664.75448445 13074297.691568023 14008127.689375201 13752428.464382043 15073076.538428044 14384111.69161853 0.9645094526964342 1.0632459843451585 1.1779784291638136 1.0239768979331816 0.8800449430506383 0.9089402232037921 0.9738611594303449 0.9560846550152581 1.0478976291049635 1.0 23.777972792645844 3.471819755814392 24.85689259534437 0.9568521222156736 1.073533578405558 0.36192437958106416 0.0644489210935777 129.81470321726292 608652.6202402859 0.018128913419551664 0.024626905359416633 2963.6011580504714 -3.471819755814392 0.11668145618988435 KEDQDRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEDQDRSPR 9 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 KEDQDRS(1)PR;KEDQDRS(1)PR 98.942 0.0044675 357780000.0 466360.0 391120.0 317460.0 309680.0 329810.0 334030.0 420860.0 423210.0 601420.0 483210.0 True False 463849.16957746644 404138.19276296685 362155.60858821374 348885.45624779415 371809.3485629762 310939.2923220421 400501.3939586722 454792.079216836 453208.0996151154 452371.12410310574 1.0253730728218289 0.8933775195404703 0.8005718961532792 0.7712372378752345 0.821912206045743 0.6873544215239784 0.8853381054167125 1.0053517012575244 1.0018501965917235 1.0 18.787147316136735 1.8414232926986527 3.9310772998269568 1.0019384446418107 0.8285357209453816 0.45361129488794316 0.08233589026440807 0.2150516579656629 5.414991655237557 0.04333549705547237 0.023640339653250516 69.41019950603531 -1.8414232926986527 -0.17340272369642906 KEDQYMK ddPTM_BT-474_Trastuzumab_2h_R1 6 KEDQYMK 7 1 P53004 P53004 BLVRA Biliverdin reductase A 0 ;;;;; 114.5 0.0094467 3000930000.0 3822480.0 3307710.0 3146370.0 2758690.0 2607430.0 3397450.0 3892290.0 3382450.0 5387530.0 3702090.0 False True 3801900.192397452 3417805.127797082 3589351.5472617038 3107939.8711451455 2939470.7550515756 3162592.2782370495 3704005.0627082624 3634865.5947330794 4059845.420703376 3465819.4466812913 1.0969700675082703 0.9861463300027976 1.0356429705819503 0.8967402713725221 0.8481315314524757 0.9125092425877528 1.0687241847682072 1.0487752321355512 1.1713955337722213 1.0 21.72476506797621 2.2209224416228617 23.4974047234234 1.0730704766856138 0.958867397619877 0.3250623884098315 0.07720008477320268 149.1438190500703 198685.27995483766 0.030642842064460846 0.022694051440801857 166.31156167398024 -2.2209224416228617 -0.11420307906573679 KEDS(ph)DEEEDDDS(ph)EEDEEDDEDEDEDEDEIEPAAMK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMK 35 1 P19338;C9J1H7;C9JWL1 P19338 NCL Nucleolin 2 KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK;KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK 184.18 2.9257000000000003e-20 478840000.0 245516.0 144990.0 116703.0 108269.0 121241.0 207511.0 161531.0 185124.0 323880.0 192339.0 True False 244194.16913539215 149815.90450169423 133133.76799933976 121975.84429892937 136680.32269829212 193166.25299835156 153717.12842165626 198938.89292062446 244064.11376965116 180063.7603502973 1.3561538904904302 0.8320158604387764 0.739370141667265 0.6774036267022121 0.7590662464917608 1.072765850399684 0.8536816521137507 1.104824716165026 1.3554316165276519 1.0 17.458148327953218 1.6192568242738297 4.041871055283109 1.1925559524255502 0.882844116674102 0.25105878655393954 0.20164684099787322 0.21726705139365818 8.180629736472802 0.11882303055213671 0.05312800327714314 41.615663602398094 -1.6192568242738297 -0.30971183575144823 KEDS(ph)LRGT(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEDSLRGTPAR 11 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 2 KEDS(1)LRGT(1)PAR 67.153 0.06704700000000001 310920000.0 70959.0 134780.0 137010.0 171050.0 157020.0 125140.0 117330.0 105740.0 77919.0 121900.0 True False 70576.96462828603 139266.0708237694 156299.81708773135 192704.91246184843 177015.56626954454 116489.36634787393 111654.29965587385 113630.85573684049 58716.906511107336 114120.23763615933 0.61844389820937 1.220345082594207 1.3696064810699913 1.6886129616749879 1.5511321211397182 1.0207599349667313 0.9783917556485692 0.9957116992616235 0.5145179131006533 1.0 16.80019513064146 2.5337264458926203 5.1708200725976 0.8994732104631081 1.3127326425530783 0.3086325379116702 0.2943979472328546 0.27864911543369525 15.841434371565143 0.1033859649495245 0.09530000002434257 341.76410377802114 -2.5337264458926203 0.4132594320899702 KEDVT(ph)S(ph)KLDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEDVTSKLDEK 11 2 Q9NQW6;Q9NQW6-2;H7C1K5 Q9NQW6 ANLN Actin-binding protein anillin 2 KEDVT(1)S(1)KLDEK 81.865 0.03876 69547000.0 16309.0 18680.0 25766.0 18890.0 24295.0 43227.0 34802.0 82190.0 62629.0 77090.0 True False 16221.194156100242 19301.75250770155 29393.628837913206 21281.472063164674 27388.82424225311 40238.81923541274 33118.494303449384 88323.43515236335 47194.9221356042 72170.05019993057 0.2247635149367798 0.2674482344716468 0.40728292077509853 0.29487955189457726 0.37950402093913826 0.5575556498012724 0.45889526488761184 1.2238239395384032 0.6539405474273815 1.0 16.139112637820983 1.8726992793852637 5.830859431005303 0.9665339392988733 0.36449919414202564 0.7544277466477772 0.15479455886008311 0.10627437145985809 4.505415722858456 0.06792714894863579 0.0407897634833663 74.59320702169458 -1.8726992793852637 -0.6020347451568477 down KEECPAVR ddPTM_BT-474_Trastuzumab_2h_R1 8 KEECPAVR 8 1 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 P4HB Protein disulfide-isomerase 0 ;;;;;;; 172.23 0.0004566 13509100000.0 15487280.0 17442070.0 14753710.0 14003070.0 14275980.0 16060130.0 16960380.0 16052450.0 19763800.0 15782580.0 False True 15403898.205278585 18022618.75599602 16830904.126453795 15775857.226232905 16093941.4326372 14949931.014579536 16139941.624456562 17250365.331689447 14893276.311351832 14775322.232253456 1.0425422852472883 1.2197783894454735 1.139122643952438 1.0677166276479138 1.0892447000245649 1.0118175955543576 1.092358012282415 1.1675119540901213 1.007983181499818 1.0 23.816686258425158 -4.999999894290579 0.10579252512363455 0.6764309105511144 1.1633458385623727 0.21829493802273514 0.06162040819486959 283.3625067764598 2.0143267586498363 19.993384723714197 0.8990348283449351 1.0000002434049662e-05 4.999999894290579 0.48691492801125835 KEEDRPPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEEDRPPLR 9 2 P53618 P53618 COPB1 Coatomer subunit beta 0 ; 138.25 7.9797e-05 1526100000.0 1656010.0 1804390.0 1501730.0 1592100.0 1636660.0 1978910.0 2009220.0 1762910.0 2439200.0 1877090.0 False True 1647094.2261600085 1864448.0303732094 1713160.5307288463 1793659.696758311 1845078.949756162 1842112.6095530738 1912026.3526342332 1894467.2960755948 1838091.8436054513 1757292.5091423981 0.9372908708088847 1.060977623630289 0.9748863787992306 1.0206950108913062 1.0499555083499479 1.0482674910234893 1.088052411699717 1.0780603036885086 1.045979445108137 1.0 20.744922923655775 3.2972769188208506 2.0595347140919014 1.0612353328381532 0.9970485736961231 0.3393306650523885 0.03657137379039573 0.32308502763720126 2.81067348701434 0.010728365152562268 0.015398381853211058 1982.7909080972793 -3.2972769188208506 -0.06418675914203009 KEEEESQPAKK ddPTM_BT-474_Trastuzumab_2h_R1 3 KEEEESQPAKK 11 2 O75400-3;O75400;O75400-2;F5H578 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;; 138.45 3.2235e-05 1482250000.0 2670080.0 1904260.0 1723290.0 1548380.0 1576250.0 2174690.0 2500550.0 2390210.0 3879990.0 2403430.0 False True 2655704.5859537786 1967642.1429505227 1965914.2528948025 1744404.7492410208 1776976.094334285 2024358.79896962 2379588.8434713623 2568579.607440448 2923818.453702326 2250041.0397200547 1.1802916209404766 0.8744916684698927 0.8737237313410947 0.7752768587092331 0.7897527480455968 0.8996986113735447 1.0575757514927042 1.1415701145433441 1.299451166484546 1.0 21.101519885104548 2.069434262045252 2.5183234124546003 1.1596354212420668 0.8846249059442701 0.4506581102694943 0.12420524822109838 0.24749145044024143 3.051483155206099 0.06171836635067423 0.0368956084239179 117.33680595700835 -2.069434262045252 -0.27501051529779663 KEEELQAALAR ddPTM_BT-474_Trastuzumab_2h_R1 5 KEEELQAALAR 11 1 P35579;P35749;P35749-2;P35749-4;P35749-3;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;A0A0C4DFM8 P35579;P35749;Q7Z406 MYH9;MYH11;MYH14 Myosin-9;Myosin-11;Myosin-14 0 ;;;; 240.8 1.7100000000000002e-15 5024370000.0 6400110.0 5525670.0 5028860.0 4756050.0 4599880.0 5951480.0 6155280.0 5762750.0 7359450.0 6493060.0 False True 6365652.5188790625 5709588.5856119525 5736879.776365289 5358165.442351207 5185647.452375193 5540068.195876988 5857525.590946957 6192795.667651575 5545812.159077628 6078667.351811664 1.0472118558982944 0.9392829472582156 0.94377261401802 0.881470416497504 0.8530895264123446 0.9113951916164397 0.9636200258928794 1.0187752198359556 0.9123401295227602 1.0 22.53532364041623 2.0840253806845914 5.356319369547453 0.9819334661874889 0.9251363569488924 0.13679926453461366 0.05411996580809435 0.3616988407998444 17.41333781980596 0.02180440770064786 0.01583824696510747 121.34597644205934 -2.0840253806845914 -0.05679710923859649 KEEELQGALAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEEELQGALAR 11 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;;; 184.87 7.5629e-06 1042930000.0 1271980.0 1266230.0 1163790.0 1132580.0 1109530.0 1422700.0 1400850.0 1305990.0 1818400.0 1536250.0 False True 1265131.8010102648 1308375.700097801 1327641.516155981 1275964.5118739556 1250822.0688004568 1324352.0976755654 1333085.5337333218 1403449.605482845 1370279.685311641 1438205.209750205 0.8796601433741152 0.90972810502129 0.923123840155309 0.8871922471311112 0.8697104281924456 0.9208366710794949 0.9269091258297271 0.975834043687412 0.9527706310767977 1.0 20.455838110168635 1.9428683051490094 1.4626945902627728 0.9797538779230233 0.8963044109050925 0.7852253910043577 0.018408639443738023 0.1871939383460397 0.7451067607544197 0.013121230209231486 0.005970483603255098 87.67349209594427 -1.9428683051490094 -0.08344946701793077 KEEEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEEEMR 6 1 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;H0Y961;B1AMS2;Q14141-2;Q14141-4;Q14141;A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599-2;Q92599-4;Q92599;Q92599-3 D6RGI3;B1AMS2;A0A087X142 SEPT11;SEPT6;SEPT8 Septin-11;Septin-6;Septin-8 0 ; 105.39 0.05294 1307260000.0 2156200.0 2068520.0 2063080.0 1941570.0 2040900.0 1790980.0 2390000.0 2024800.0 2948500.0 2383100.0 False True 2144591.258776339 2137369.4377532573 2353543.731387175 2187372.5629263413 2300796.517637969 1667173.7681134352 2274386.569313375 2175900.857726069 2221881.682875808 2231008.5177254416 0.9612653836762547 0.9580283628555344 1.0549236870626835 0.980441152755621 1.0312809204259237 0.7472736006463806 1.0194432478600117 0.9752992157754934 0.9959090990567178 1.0 21.089264590954993 KEEENADS(ph)DDEGELQDLLSQDWR ddPTM_BT-474_Trastuzumab_2h_R1 6 KEEENADSDDEGELQDLLSQDWR 23 1 Q96NB3;J3QQQ3 Q96NB3 ZNF830 Zinc finger protein 830 1 KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR 284.08 2.222799999999999e-52 6107500000.0 1890841.0 1388264.0 1404845.0 1350231.0 1381617.0 1861710.0 1708633.0 1725623.0 2416448.0 1849131.0 True False 1880660.9221481825 1434471.5280166913 1602634.9648683618 1521170.1061576963 1557557.7354644604 1733014.3696939459 1625979.8941780848 1854397.7507960456 1820946.7691442685 1731117.8764593014 1.0863852471991944 0.8286388509548822 0.925780379639006 0.8787212741797708 0.8997410035705784 1.0010955309632197 0.939265844509527 1.071214026504591 1.0518906851500467 1.0 20.723272534348325 2.108128871403217 1.4807511522983208 1.0453724638486344 0.9197596072572078 0.2980096097216647 0.06933625534630426 0.4285422539074699 1.785621312966223 0.04137624235493179 0.021718599405450855 128.27111545252592 -2.108128871403217 -0.1256128565914265 KEEESAGGTK ddPTM_BT-474_Trastuzumab_2h_R1 6 KEEESAGGTK 10 1 P61081 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 ;;;;; 145.31 4.9155e-05 1734506000.0 3936467.0 3221409.0 2869604.0 2506904.0 2719140.0 2592912.0 3712562.0 3638263.0 5668830.0 4271903.0 False True 3915273.499054603 3328631.6511821365 3273619.3001548937 2824277.7893613433 3065406.3613945297 2413670.0964983124 3532971.192695902 3909768.6597851715 4271822.804930256 3999266.4931798377 0.9789979001728261 0.8323105391597758 0.818554928944488 0.7061989477764822 0.7664921471530168 0.6035281971367681 0.8834047940343226 0.9776214379443602 1.0681515753489352 1.0 21.931303988401467 1.7974242328453565 2.8841703983671607 1.0245211663199494 0.7824881137174592 0.5463706650829329 0.09332726421920697 0.19314071099777863 3.0446521204733994 0.05513242604493968 0.026888108468102474 62.722626034362044 -1.7974242328453565 -0.2420330526024902 KEEFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEEFQK 6 1 P49257 P49257 LMAN1 Protein ERGIC-53 0 84.09700000000002 0.090173 133600000.0 194400.0 178130.0 190350.0 150010.0 148250.0 194190.0 195450.0 166680.0 279480.0 185090.0 False True 193353.37199987046 184058.94936814092 217149.6254481402 169001.2506191281 167128.75875340728 180766.10237409014 185995.33680849336 179118.50798389004 210605.89884013255 173277.3977364786 1.115860317188763 1.062221338573303 1.2531907120303294 0.9753219567398301 0.9645156317939273 1.0432180119013583 1.0733964108311247 1.0337095912318273 1.2154262563454663 1.0 17.402723956401115 3.7176288316870774 24.99853148498519 1.0430333051833687 1.135603879039214 0.24877863620125762 0.07932932213860415 1162.60596633345 1388482.8923578109 0.021006072092802943 0.03257212806762134 5219.499155898256 -3.7176288316870774 0.09257057385584533 KEELLK ddPTM_BT-474_Trastuzumab_2h_R1 4 KEELLK 6 1 P42766;F2Z388 P42766 RPL35 60S ribosomal protein L35 0 ;;; 102.72 0.056601 10948400000.0 12244700.0 11726200.0 10512400.0 9814500.0 10541600.0 14097600.0 14829300.0 13801800.0 19952700.0 14643700.0 False True 12178775.895714063 12116499.478362415 11992454.544581193 11057014.693696653 11884010.275041591 13123066.094180834 14111950.105572727 14831760.400120337 15035624.437482167 13709126.528897682 0.8883699388171983 0.8838272411318006 0.8747788941404918 0.806544069046952 0.866868523679543 0.9572503446166696 1.0293836063024093 1.081889525846613 1.0967602061143968 1.0 23.708633317562676 2.409359394542151 2.026927892215638 1.0663175551836304 0.8621085423555341 0.8823255916851749 0.03237894593226715 0.09895118251105937 0.8303504757883714 0.014173988988908042 0.01092347184807434 256.66071190437367 -2.409359394542151 -0.20420901282809623 KEELNAISGPNEFAEFYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEELNAISGPNEFAEFYNR 19 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 157.0 1.6495e-08 677360000.0 303130.0 299540.0 278180.0 273080.0 270130.0 305940.0 337100.0 300640.0 321900.0 342020.0 False True 301497.9817609089 309510.00782424625 317345.3260160944 307651.9000004765 304529.4543140495 284791.0879052949 320793.18515294505 323075.2834189867 242572.05823901072 320191.990781946 0.9416162503772061 0.9666388190047693 0.9911095066466226 0.9608357137514741 0.951083921775661 0.8894385122182539 1.0018776058999193 1.0090048868180599 0.7575831539278094 1.0 18.288577695458745 3.2202206980225045 3.9924874351450463 0.9424514937488677 0.9674535011689755 0.036598349875345715 0.07038713572699763 1.0789315094588237 37.9611656932442 0.020607429495436116 0.026364577669032774 1660.4304839596277 -3.2202206980225045 0.02500200742010783 KEELQK ddPTM_BT-474_Trastuzumab_2h_R1 4 KEELQK 6 1 P30040;F8VY02 P30040 ERP29 Endoplasmic reticulum resident protein 29 0 ;;; 91.626 0.076449 2977930000.0 3016860.0 2850220.0 2503120.0 2390200.0 2459650.0 2430400.0 3125660.0 3184210.0 4388200.0 2881040.0 False True 3000617.5609646575 2945087.8497056235 2855537.5384909306 2692799.074927275 2772871.8480122634 2262392.1685462124 2974459.8846192653 3421831.9192907577 3306786.908867428 2697169.560617559 1.1125060896348018 1.0919179471354035 1.0587163596185294 0.9983796029162945 1.0280673074841358 0.8388023510202312 1.1028078946353734 1.268675121228669 1.2260211434798662 1.0 21.363014790405526 1.9984028679053991 24.998066981444772 1.192499054857384 1.020994184454912 0.3012799976696029 0.0962108588329971 59.626737172734785 933274.8515676765 0.03636908014825043 0.0264789502292501 99.63292212885737 -1.9984028679053991 -0.17150487040247198 KEELTLEGIR ddPTM_BT-474_Trastuzumab_2h_R1 6 KEELTLEGIR 10 1 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3KTB5;J3KTN0 P60842;J3KTN0 EIF4A1 Eukaryotic initiation factor 4A-I 0 ;;;;; 177.04 3.7992e-06 14096510000.0 17378460.0 18537120.0 17195430.0 16268210.0 16234400.0 18657060.0 19002300.0 17325510.0 26537580.0 19980530.0 False True 17284896.302288413 19154116.833274335 19616397.078643087 18327763.71798283 18301754.611172434 17367341.35619518 18083086.15316464 18618427.53335716 19997748.994353544 18705355.46920766 0.9240613647114285 1.0239910631372613 1.0487048541224018 0.9798137088682215 0.9784232457544245 0.9284689288468703 0.9667330932541012 0.9953527781926625 1.0690921659988442 1.0 24.15694804676909 1.4198237640057507 6.962156856825178 1.034645488103659 0.9813610244941454 0.2428036065103416 0.0387958837612704 0.3147652718793914 27.178157524414946 0.026190108700656148 0.00998115494264577 26.29200849960046 -1.4198237640057507 -0.053284463609513666 KEELVAEQALK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEELVAEQALK 11 1 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 ; 143.86 0.0020247 0.0 593210.0 518380.0 497120.0 432200.0 412210.0 660790.0 653230.0 592470.0 881320.0 666110.0 False True 590016.2232718267 535633.9649326721 567110.1749555003 486916.4756855361 464702.500139912 615111.142632345 621630.7693190696 636683.1199017001 664130.4950829592 623598.2895145371 0.9461479179667835 0.858940721838182 0.9094158603241006 0.7808175292857106 0.7451952770776147 0.9863900414338864 0.9968448916096303 1.0209827874886401 1.0649973007462479 1.0 19.250257445268726 2.5748037685190748 6.396031241783879 1.0179368112609941 0.8486830946744258 0.6870489867001348 0.0562718992665081 0.14792316276747625 8.163659436334749 0.019454912032870985 0.0182571566011005 375.6676243944584 -2.5748037685190748 -0.1692537165865683 KEENLADWYSQVITK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEENLADWYSQVITK 15 1 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 168.69 1.9881e-06 1941710000.0 3161200.0 3004000.0 2819900.0 2548900.0 2836900.0 3664200.0 3529000.0 3441900.0 4618200.0 3876800.0 False True 3144180.4504423346 3103986.3240436497 3216917.4089898122 2871590.4786553984 3198162.3993763304 3410902.4785990086 3358288.787910834 3698752.0556140654 3480106.4907095344 3629379.304904538 0.8663135446310246 0.8552388888780784 0.8863547011034785 0.7912070460022994 0.8811871481866098 0.939803253407465 0.92530664496065 1.0191142189563325 0.9588709799515072 1.0 21.791291409472596 2.444429592799875 1.3760810211826398 0.9903453767017609 0.8518354585092721 0.7746894659395349 0.031439568145106275 0.1872679358986633 0.715802141231199 0.01621293318911017 0.01163142129107557 278.2464248162217 -2.444429592799875 -0.1385099181924888 KEEPS(ph)PLNLSHHTPDHQGEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEEPSPLNLSHHTPDHQGEGR 21 1 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 KEEPS(1)PLNLSHHTPDHQGEGR;KEEPS(1)PLNLSHHTPDHQGEGR 214.78 2.5716999999999997e-25 1205630000.0 578660.0 695380.0 748160.0 745950.0 719980.0 831220.0 867580.0 405560.0 924560.0 741010.0 True False 575544.5588551697 718525.3029339132 853494.4248767028 840387.193516023 811665.1853442035 773759.717881411 825611.8409225511 435824.9465919519 696714.5764692755 693718.1073894219 0.8296519187325826 1.0357597636276858 1.23031879344846 1.2114246183922481 1.1700216221811426 1.115380598602506 1.1901258337186376 0.6282450204911539 1.004319433279794 1.0 19.403990016651775 1.7588175266337016 24.999999999999833 0.8435161765887412 1.1196524191804735 0.34018715023930135 0.14697477682169496 8.764955588844739 10826.89733358296 0.0676456225846351 0.03751338831959072 57.387529184310296 -1.7588175266337016 0.2761362425917323 KEEPSNNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEEPSNNVK 9 1 Q14974;Q14974-2;J3KTM9;J3QRG4 Q14974 KPNB1 Importin subunit beta-1 0 ; 156.48 0.00011357 598770000.0 922730.0 750040.0 682470.0 640310.0 652810.0 809560.0 870020.0 839500.0 1326500.0 956980.0 False True 917762.1242049397 775004.6279912449 778555.8438644196 721373.1803475359 735941.4839919844 753597.022699256 827933.8088008452 902147.7528946233 999601.8491893371 895904.7170882024 1.024397022026825 0.8650525141893468 0.8690163462860419 0.8051896218295235 0.8214506185254637 0.8411575565184393 0.9241315432423766 1.0069684149300069 1.1157457150556847 1.0 19.772985778713 1.7474096917996371 2.3573178001225856 1.0580368366795962 0.8664154552839962 0.5968400972082462 0.06266056030331357 0.17858145057814706 2.0338471243981715 0.04054119133128851 0.017814769520402233 55.89972762959675 -1.7474096917996371 -0.19162138139560003 KEEQEVQATLESEEVDLNAGLHGNWTLENAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEEQEVQATLESEEVDLNAGLHGNWTLENAK 31 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 241.23 4.1114999999999986e-46 667770000.0 86372.0 78549.0 75970.0 76639.0 73867.0 99266.0 93471.0 81614.0 126687.0 96043.0 False True 85906.98274883129 81163.4559811268 86665.91565692265 86341.48954202632 83273.52460598943 92403.97506702943 88949.45063610472 87704.45110749465 95466.68636882743 89913.45351345089 0.9554408088215604 0.9026842236571959 0.9638815135040674 0.960273309145108 0.9261519978601629 1.0276990979242717 0.989278546872833 0.9754319034623025 1.0617619793076438 1.0 16.456249378103223 2.7426328027758173 24.999392343535927 1.0047228983502128 0.9417852545862689 0.604766069316053 0.027730806611760646 271.94190679429107 1669467.0329181098 0.00861744469172618 0.008866512207365267 552.8824478511755 -2.7426328027758173 -0.06293764376394384 KEEQLSSYEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEEQLSSYEDK 11 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 136.99 0.00014069999999999998 455530000.0 584550.0 490470.0 451470.0 400800.0 409750.0 568850.0 569910.0 516630.0 745200.0 552110.0 False True 581402.8477496111 506794.99745462456 515033.05175241263 451541.2389050496 461929.23372147465 529526.7384288652 542341.2760323789 555183.5539939837 561555.445168409 516873.8671148473 1.1248447343545533 0.9805003303485196 0.996438559812068 0.8736004422617075 0.893698178822486 1.0244796112147154 1.0492719994912663 1.0741180572602331 1.0864458060202793 1.0 18.979452736622378 2.501006494704658 9.122927670214398 1.0571708433915663 0.9687618508311894 0.23630849172241475 0.06665717787815262 0.45823493845207 166.39762474189988 0.023037517597157227 0.02111519431209805 316.9614863043601 -2.501006494704658 -0.08840899256037693 KEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK 41 1 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ;; 212.91 1.1226e-36 3254820000.0 124078.1 147456.0 148786.9 146424.6 143685.0 171710.0 180402.3 150232.9 237465.0 190959.0 False True 123410.07729597288 152363.98382096566 169734.8022410814 164961.93934674741 161982.43306228184 159840.09186186214 171675.55154528946 161444.0418652087 178944.93261797665 178771.8331317747 0.6903217085938026 0.8522818228789794 0.9494493582552682 0.9227512883707588 0.9060847574510398 0.8941010955794263 0.9603053710298171 0.9030731465745306 1.0009682704661553 1.0 17.44775992123651 4.673439018148689 2.233228310942702 0.934612584846708 0.6466436021607048 0.8137627508796996 0.03674230757861167 0.2026262920099296 1.305937724615762 0.008734266933710428 0.10891128887257828 47145.36670966834 -4.673439018148689 -0.2879689826860031 KEERDDETDEPKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEERDDETDEPKPK 14 3 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ; 100.11 0.00083827 109616000.0 364550.0 259268.0 212171.0 211688.0 199256.0 299663.0 307530.0 286947.0 566250.0 310026.0 False True 362587.30330531223 267897.57864918414 242042.83257660808 238487.67909514043 224630.07051715918 278948.00214082585 292653.5990213143 308360.4422273421 426705.2748612607 290239.87525338755 1.249267706543642 0.9230212713373793 0.8339406581032255 0.8216916400165001 0.7739462757178035 0.9610946872730579 1.0083163065234213 1.0624330718104629 1.4701814300627543 1.0 18.146886215338164 1.5811971656172124 2.8501049056325143 1.2401967586223772 0.921795726328273 0.3275192590052767 0.16482823287058435 0.23285302610727973 4.322941002577867 0.11164590848799683 0.04336951806892538 38.12388629759844 -1.5811971656172124 -0.3184010322941042 KEES(ph)DEEETASK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEESDEEETASK 12 1 A0A1B0GVJ7;Q9BY89-2;Q9BY89 A0A1B0GVJ7;Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 KEES(1)DEEETASK;KEES(1)DEEETASK 223.06 1.4295999999999996e-11 1168400000.0 1255080.0 843560.0 667760.0 672430.0 677850.0 995580.0 1086530.0 1022880.0 1769940.0 971400.0 True False 1248322.7887324963 871637.3846572108 761774.8037260313 757559.5690541989 764170.179568277 926757.8979432352 1033970.3929523258 1099212.4996793948 1333762.0029809102 909404.4203426195 1.372681681338418 0.958470582679618 0.8376634055055852 0.8330282458587426 0.8402974105628106 1.019082244612444 1.136975332232029 1.2087169086612364 1.4666324169376848 1.0 19.79456249104497 2.111164462759438 2.150807229623934 1.2449029842590513 0.9525004344333061 0.2788387461316194 0.18122716151486848 0.3785085633277135 3.4138042006564966 0.0939891735484242 0.05555537360051928 129.17083373881826 -2.111164462759438 -0.2924025498257452 KEES(ph)EES(ph)DDDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 59 KEESEESDDDMGFGLFD 17 1 P05387;H0YDD8;P05386-2;P05386 P05387;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 2 KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD 173.98 9.2711e-10 79699546000.0 51317040.0 40303385.0 34394356.0 33811608.0 36035784.0 49859418.0 48134443.0 50046247.0 73798289.0 51015837.0 True False 51040754.75849908 41644858.80581429 39236782.36369837 38092154.10601772 40624727.49157429 46412753.79010541 45805996.100661136 53780952.08083303 55611689.52235895 47759962.60580455 1.0686933568138053 0.8719617129841083 0.8215413124910967 0.7975750404249303 0.8506021628801889 0.9717920881383729 0.9590877714609866 1.1260677175299278 1.1643997710249492 1.0 25.509298371240522 2.0660185587847524 1.7429110754599468 1.1091907656339297 0.878445500197962 0.5301337412650118 0.08341402808549588 0.2635164086117357 1.516071945506565 0.0502797564601131 0.02656881029478336 116.41757772818815 -2.0660185587847524 -0.23074526543596774 KEES(ph)EESDDDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 6 KEESEESDDDMGFGLFD 17 1 P05387;H0YDD8;P05386-2;P05386 P05387;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 1 KEES(0.561)EES(0.439)DDDMGFGLFD;KEES(0.531)EES(0.469)DDDMGFGLFD;KEES(0.5)EES(0.5)DDDMGFGLFD;KEES(0.985)EES(0.015)DDDMGFGLFD;KEES(0.756)EES(0.244)DDDMGFGLFD;KEES(0.877)EES(0.123)DDDMGFGLFD 238.94 3.0575e-20 2673140000.0 3484067.0 2800495.0 2412332.0 2380211.0 2605443.0 3211240.0 3436191.0 3395005.0 4630285.0 3535791.0 True False 3465309.1703882315 2893707.7831400223 2751967.37723437 2681545.4685514667 2937230.722379446 2989254.537245864 3269969.3138056477 3648357.5125860786 3489213.3043902377 3310133.791237024 1.0468788843405683 0.8741966233511728 0.8313764792588451 0.8101018380738475 0.887345016130535 0.9030615454757057 0.9878662072398087 1.102178263079408 1.054100385195092 1.0 21.65845809936371 2.1126894258335436 2.799174577184904 1.0615340753539266 0.8829571153038315 0.5590831164850215 0.0639773884562452 0.18364210115182614 2.857625963135029 0.029729423962661625 0.01921709588992032 129.6251959284361 -2.1126894258335436 -0.17857696005009516 KEES(ph)PPPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 KEESPPPPK 9 1 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK 81.431 0.013047 4193730000.0 5030550.0 3399740.0 3154400.0 2932420.0 2911880.0 3994940.0 4548020.0 4085190.0 6843500.0 4186590.0 True False 5003466.077746642 3512898.2907137717 3598512.1014636853 3303664.0713321995 3282690.657935049 3718779.2008772236 4328014.897476403 4390047.621974498 5157011.1232018275 3919398.2418799694 1.2765903766254412 0.8962851116218247 0.9181287226729049 0.8429008402441829 0.8375496582252079 0.9488138156365256 1.1042549469023688 1.1200820511336398 1.3157660449243422 1.0 21.902200738945933 2.1571061816074377 3.069600710376057 1.1513404655424753 0.9375013882015181 0.2964467237892533 0.13676754360392604 0.2970360344466282 5.624026974057936 0.05775281325641272 0.03983238313669438 143.5840442211536 -2.1571061816074377 -0.2138390773409572 KEESDEEET(ph)ASK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEESDEEETASK 12 1 A0A1B0GVJ7;Q9BY89-2;Q9BY89 A0A1B0GVJ7;Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 KEES(0.051)DEEET(0.885)AS(0.064)K 245.4 3.5456e-16 358350000.0 524520.0 329110.0 272160.0 256920.0 301050.0 415790.0 423670.0 435860.0 709210.0 387500.0 True False 521696.04259965016 340064.22739880363 310477.7623428724 289446.0456573988 339386.93303685094 387047.41596438 403175.4635234299 468386.0864522342 534434.6984271159 362769.41824455874 1.4380926736441495 0.9374115079611023 0.8558542885044564 0.7978788483826125 0.9355444973259994 1.0669240473392232 1.1113821707309177 1.2911399442619902 1.4732076948857638 1.0 18.468693315070208 2.058783823022909 2.0450645906480323 1.2830596358469424 0.9770402872790209 0.23698502436041136 0.1962685193606584 0.4071924584273611 3.239972182258726 0.10797676789423524 0.05961218948180805 114.49428860714036 -2.058783823022909 -0.30601934856792146 KEESEES(ph)DDDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 22 KEESEESDDDMGFGLFD 17 1 P05387;H0YDD8;P05386-2;P05386 P05387;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 1 KEES(0.002)EES(0.998)DDDMGFGLFD;KEES(0.137)EES(0.863)DDDMGFGLFD;KEES(0.019)EES(0.981)DDDMGFGLFD;KEES(0.202)EES(0.798)DDDMGFGLFD;KEES(0.077)EES(0.923)DDDMGFGLFD;KEES(0.204)EES(0.796)DDDMGFGLFD;KEES(0.417)EES(0.583)DDDMGFGLFD;KEES(0.077)EES(0.923)DDDMGFGLFD;KEES(0.008)EES(0.992)DDDMGFGLFD;KEES(0.068)EES(0.932)DDDMGFGLFD;KEES(0.101)EES(0.899)DDDMGFGLFD;KEES(0.07)EES(0.93)DDDMGFGLFD;KEES(0.288)EES(0.712)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEES(0.249)EES(0.751)DDDMGFGLFD;KEES(0.357)EES(0.643)DDDMGFGLFD;KEES(0.169)EES(0.831)DDDMGFGLFD;KEES(0.247)EES(0.753)DDDMGFGLFD;KEES(0.046)EES(0.954)DDDMGFGLFD;KEES(0.005)EES(0.995)DDDMGFGLFD;KEES(0.124)EES(0.876)DDDMGFGLFD;KEES(0.092)EES(0.908)DDDMGFGLFD 276.38 9.9816e-36 18846277000.0 11906608.0 9514455.0 8112744.0 7889587.0 8574580.0 11375984.0 11455412.0 11516315.0 16431912.0 12403855.0 True False 11842504.145476518 9831137.883065507 9254947.83796504 8888407.905262414 9666501.937482558 10589589.002265882 10901269.95763651 12375720.90396266 12382487.463940034 11612230.354425455 1.0198302810074127 0.8466192611584589 0.7970000211404652 0.7654350313396097 0.8324414554692868 0.9119341142100371 0.9387748627878367 1.0657488291425632 1.0663315389038104 1.0 23.469141760638642 2.0922349300016916 1.8057796625991231 1.051163253512376 0.8468324699341682 0.5947819321397656 0.06716169870076946 0.2374092132954707 1.4804206518754883 0.03986322866243797 0.021826521020142174 123.66161955259743 -2.0922349300016916 -0.2043307835782079 KEESEESDDDMGFGLFD ddPTM_BT-474_Trastuzumab_2h_R1 1 KEESEESDDDMGFGLFD 17 1 P05387;H0YDD8;P05386-2;P05386 P05387;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 0 147.18 8.3901e-06 75568000.0 278150.0 228580.0 196230.0 175910.0 219070.0 250850.0 218620.0 247750.0 383090.0 248860.0 False True 276652.4713053702 236188.14712047187 223857.47833826384 198180.18796354116 246967.26597038013 233509.32993738382 208044.51539049798 266238.3630490092 288682.6026430025 232977.54174023497 1.187464118811211 1.013780750523227 0.960854323838047 0.8506407376574858 1.060047522716775 1.002282572788676 0.8929809879377267 1.1427640667007266 1.2391005608810033 1.0 17.829831365017714 1.6308968990222588 8.018878722753927 1.1447813730789222 0.9923702353446319 0.25407350300394316 0.10202423017434291 0.13670596802831414 18.94858587967775 0.050919863909506674 0.02584477420934272 42.74613952938056 -1.6308968990222588 -0.15241113773429038 KEESEKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEESEKPR 8 2 P83916;J3KS05;K7ELA4 P83916 CBX1 Chromobox protein homolog 1 0 ;;; 118.18 0.0010893 605106000.0 696460.0 631120.0 517228.0 535978.0 583851.0 489474.0 715710.0 810420.0 1214720.0 867560.0 False True 692710.3367439796 652126.4476799032 590049.2065736303 603832.7598449374 658200.9640940004 455637.8144778589 681088.3730222913 870897.6556293755 915368.5324140758 812191.5780445153 0.8528903222707548 0.8029219525398241 0.7264901810411168 0.7434609963560124 0.8104011194978498 0.560997955155952 0.8385809351312451 1.0722810715745228 1.1270352428647141 1.0 19.631460541865994 1.8123771447700137 3.7472084965335206 1.0759445928163642 0.7504000496645639 0.7580946570657744 0.07969989286115642 0.10334362151903602 2.550337972734391 0.0407067296058641 0.021485880797349224 64.91979574798862 -1.8123771447700137 -0.32554454315180037 KEESETANKNDSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEESETANKNDSSK 14 2 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 105.39 0.00056388 421060000.0 91509.0 86751.0 89411.0 67057.0 80830.0 118500.0 117680.0 112420.0 203170.0 113730.0 False True 91016.32571160572 89638.45459291313 101999.29162565623 75546.40932449099 91123.2213830549 110308.37391899539 111987.36881874377 120809.35125719295 153101.47583852054 106471.65403084822 0.8548409108515906 0.8418997094470048 0.9579948067314122 0.7095448080726049 0.855844893295765 1.0360351299420554 1.0518045374433411 1.134662106612814 1.4379552683023236 1.0 16.700109867025684 2.2706557080281846 1.3380364428645428 1.2039200929890652 0.8424789121330916 0.6130421926626202 0.11892093682205604 0.2810569738955141 0.9868424189735502 0.06935876903983283 0.04148151225662374 186.49006830834983 -2.2706557080281846 -0.36144118085597365 KEETPGT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 KEETPGTPK 9 1 Q99442 Q99442 SEC62 Translocation protein SEC62 1 KEET(0.004)PGT(0.996)PK;KEET(0.001)PGT(0.999)PK;KEET(0.197)PGT(0.803)PK 101.39 0.0023539000000000003 1391740000.0 3641910.0 3008320.0 3300810.0 2056140.0 3051710.0 5097250.0 3707210.0 3075400.0 5460500.0 3823350.0 True False 3622302.3612142387 3108450.112632161 3765535.356845158 2316447.113179215 3440327.1795977084 4744889.105135853 3527878.089382527 3304901.9645647695 4114832.941951284 3579340.5296653807 1.0120027226224475 0.8684421297357696 1.0520193107184423 0.6471714814448715 0.9611623010117263 1.3256322123615982 0.9856223681830952 0.9233270590417203 1.149606445055387 1.0 21.771262374070137 2.993636822923692 24.998465259971805 1.0613055006971417 0.8917313914353101 0.262038483683644 0.14377043091581768 438.75074192884364 1723692.8855365969 0.042738485360722264 0.04944095518476682 985.4550579963695 -2.993636822923692 -0.16957410926183158 KEETQPPVALKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEETQPPVALKK 12 2 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 90.861 0.0048497 303730000.0 210270.0 184230.0 185160.0 180270.0 182360.0 256890.0 256680.0 224490.0 339490.0 268760.0 False True 209137.9296831933 190361.98418061336 211228.9185604289 203092.16351650032 205582.46506759748 239131.79895401455 244263.4077871786 241242.5837371224 255827.23843293483 251607.50670298756 0.8312070352100907 0.7565830871863769 0.8395175538612846 0.8071784748308101 0.8170760394294564 0.9504159954825987 0.9708112885340963 0.9588051918574093 1.0167710883718921 1.0 17.940815440062668 2.694836330588149 2.9436218876168394 0.9793434584909583 0.8063687114150885 0.9165887882204158 0.025643036735588792 0.0699094237570601 1.2118786333311358 0.008579864629840932 0.008327538827440672 495.26350926330105 -2.694836330588149 -0.1729747470758698 KEEVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KEEVSR 6 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ;; 112.17 0.043649 519430000.0 615660.0 564470.0 553160.0 530200.0 498280.0 427290.0 590370.0 587900.0 753680.0 614710.0 False True 612345.3549662558 583258.0427206794 631040.1198470885 597323.2656373689 561733.0044630539 397752.4480324685 561811.547667588 631772.0832957109 567945.6627945863 575478.6815202911 1.0640626223521796 1.0135180701739235 1.0965482130111508 1.0379589806165697 0.9761143592306076 0.6911679977122557 0.9762508424871665 1.097820134060752 0.9869099951612382 1.0 19.13440295946743 3.2412195353084066 4.7756910261186905 0.9577824374356086 1.0545646259902508 0.1942025471811485 0.09872051404761209 0.38217168043247207 22.608076950784877 0.03192859846767021 0.04120931480601438 1742.6875771300022 -3.2412195353084066 0.09678218855464216 KEEWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEEWDR 6 1 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 87.616 0.083759 620470000.0 1082800.0 1143600.0 1057100.0 965890.0 1008700.0 1177000.0 1144100.0 1126600.0 1306000.0 1205800.0 False True 1076970.3251103887 1181664.0346792014 1205930.491522086 1088171.5749650684 1137151.965966689 1095636.7603599792 1088755.5121135695 1210672.612758884 984153.799503411 1128844.811662681 0.9540463967975491 1.0467905087314198 1.0682872251907376 0.9639691512266378 1.0073589870088275 0.9705822705126408 0.9644864385831179 1.0724880871584805 0.8718238232001494 1.0 20.106415734059013 3.71854038516569 24.90675906013748 0.9868468246782938 1.0254163015236748 0.10898815476323942 0.05462125980799832 1809.316191347015 2250936.7666640044 0.014237846771586085 0.022104928268492748 5230.466021710317 -3.71854038516569 0.038569476845381034 KEFGPVVIDYGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEFGPVVIDYGK 12 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 109.83 0.0024949 439650000.0 549020.0 523890.0 471280.0 469310.0 518190.0 679560.0 632060.0 593090.0 808480.0 621800.0 False True 546064.1373218566 541327.361951807 537632.1275608062 528724.5978805614 584178.4249472382 632583.6167121729 601484.8430963224 637349.3874499968 609240.9370769653 582116.1916502378 0.9380672538481064 0.929930089072426 0.9235821564019308 0.9082801775049121 1.0035426489188597 1.0866964805065211 1.033272827184512 1.0948834555575215 1.0465967891218277 1.0 19.150947621362313 3.0476310364538093 3.731890481848644 1.0590371623331178 0.9256572105732869 0.8356364835806397 0.02648720578191074 0.07652171360605368 2.232860351637259 0.0076009040776651715 0.009014841713378607 1115.9147972589312 -3.0476310364538093 -0.13337995175983097 KEFSPFGTITSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEFSPFGTITSAK 13 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;H0YAP2;H0YB86 P11940-2 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 0 ; 200.55 1.7469e-07 3673100000.0 4477800.0 4291900.0 4116200.0 3955800.0 3772900.0 4744900.0 4882700.0 4504600.0 6537100.0 5408600.0 False True 4453692.022330349 4434753.296991666 4695725.181348222 4456603.8744026935 4253356.451269677 4416896.231293171 4646505.147274645 4840756.125895324 4926119.2976521775 5063418.517464573 0.8795820465894385 0.8758417424306255 0.9273823929726301 0.880157122906417 0.8400167666565865 0.8723150606766084 0.9176616807889919 0.9560252839457674 0.9728840862474972 1.0 22.27168030463188 1.7288015302106772 1.6524092074551544 0.9874557772429303 0.8796211127270143 0.8138981114893171 0.021039627690422957 0.15792585369021164 0.8508746901001515 0.01736241188735207 0.006823144377198901 53.5551857821785 -1.7288015302106772 -0.10783466451591606 KEGDLIAAQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEGDLIAAQAR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;; 136.93 0.00014254 3627660000.0 5070710.0 5169170.0 5215480.0 4408720.0 4113810.0 5089040.0 5439310.0 4844080.0 6952730.0 5492500.0 False True 5043409.860768842 5341222.698620743 5949774.25023517 4966863.49996375 4637679.319037798 4737246.643111598 5176189.795117957 5205569.847339825 5239322.853308844 5141963.947634174 0.980833376532973 1.0387514873724948 1.157101510401035 0.9659467764741938 0.9019276226492413 0.9212912986858286 1.006656181924327 1.0123699622077118 1.0189341867555228 1.0 22.29388806421925 KEGETVEPYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEGETVEPYK 10 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 116.54 0.0017268 358940000.0 646250.0 543050.0 480140.0 471410.0 493060.0 627170.0 584160.0 592840.0 894530.0 684750.0 False True 642770.6618051244 561125.0909693433 547739.5385483063 531090.4576652433 555848.2684044171 583815.2140993779 555901.9490920916 637080.7311805217 674085.0675878917 641048.6687560313 1.002686212659071 0.8753236974319261 0.8544429857583304 0.8284713525664685 0.8670921499346572 0.9107190179994973 0.8671758887992566 0.9938102397385685 1.0515349308750117 1.0 19.29007436561399 1.6369851706170306 4.003877584822403 1.0250002447994218 0.8827914962319673 0.625499119676949 0.045824119739873395 0.10884569058310171 4.056896336728048 0.026897985820938032 0.012170700172462235 43.34960760141412 -1.6369851706170306 -0.14220874856745447 KEGGLGPLNIPLLADVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEGGLGPLNIPLLADVTR 18 1 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 ; 142.27 1.8262e-07 5146700000.0 1204420.0 1379860.0 1345870.0 1286540.0 1219140.0 1406080.0 1429530.0 1296330.0 1700950.0 1498660.0 False True 1197935.5365436408 1425787.805957017 1535356.7974882503 1449415.832088083 1374390.2525910882 1308880.999156294 1360378.1725650826 1393068.7272303614 1281773.6640622714 1403014.2357326234 0.8538299227720273 1.0162318882049701 1.0943273121434298 1.0330727908339645 0.9795982233019978 0.9329064280469149 0.9696110972492897 0.992911327448457 0.9135856439781291 1.0 20.42009821671154 3.0130396960889354 18.611871120849898 0.9638121761127281 1.0072263368099355 0.07101351369257303 0.06126499445541488 28.149517385359992 40170.597801420634 0.018169320271213915 0.02166960211855286 1030.4803057701097 -3.0130396960889354 0.04341416069720738 KEGNASGVSLLEALDTILPPTRPTDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEGNASGVSLLEALDTILPPTRPTDK 26 2 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 109.97 0.0012905999999999998 130170000.0 174560.0 229470.0 207040.0 217660.0 192820.0 200050.0 232850.0 218830.0 219130.0 241710.0 False True 173620.18835543908 237107.77023245578 236189.43237605976 245215.73368281737 217374.48406632006 186221.01436704636 221586.15592661884 235160.20579622465 165128.347691564 226283.86086165786 0.7672672177959013 1.0478333246108757 1.0437749801363776 1.0836642646500265 0.9606274315746067 0.8229531423847124 0.9792397702728299 1.0392265930975673 0.7297398367818984 1.0 17.787774166044876 3.0023347594665477 24.996726909767848 0.9281992346464294 0.9977199608376057 0.0684118753879226 0.11648078691728325 218.5134962098686 2339428.5284930645 0.03383894936828589 0.04021230256202113 1005.3904588666962 -3.0023347594665477 0.06952072619117633 KEGSYSSLS(ph)PPTLTPVMPVNAGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEGSYSSLSPPTLTPVMPVNAGGK 24 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 KEGS(0.034)YS(0.034)S(0.16)LS(0.773)PPTLTPVMPVNAGGK 180.88 2.1029e-17 248020000.0 365250.0 314150.0 293230.0 274280.0 288670.0 390470.0 388500.0 401400.0 483360.0 406180.0 True False 363283.53458308976 324606.29284231464 334514.23519914993 309003.8198774383 325430.4134188599 363477.72796751134 369706.77078587713 431354.5062678999 364242.40469216544 380257.244651807 0.9553625596686273 0.8536492003973503 0.8797050941276795 0.8126178375914603 0.8558164716016106 0.9558732491746205 0.9722543777552727 1.1343755111434668 0.9578841950156505 1.0 18.536616208839366 2.3514554154400455 2.112529676449159 1.043396320954865 0.8688471449640877 0.5876242493364687 0.05656323219343523 0.19025192808958225 1.7397820769650054 0.024366835819809453 0.018042010358023948 224.62361661270714 -2.3514554154400455 -0.17454917599077724 KEIHTVPDMGK ddPTM_BT-474_Trastuzumab_2h_R1 4 KEIHTVPDMGK 11 1 Q15257;Q15257-2;A6PVN5;Q15257-3;Q15257-4;Q5T948;Q5T949;A6PVN6;Q68CR8 Q15257 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator 0 ;;; 111.12 0.0011052 2274600000.0 4947340.0 4790840.0 4473410.0 3714540.0 3936700.0 5315580.0 5324590.0 4820290.0 7157360.0 5658210.0 False True 4920704.071141143 4950300.213276067 5103227.244423242 4184800.383139638 4438015.410351016 4948126.466129393 5067019.23979092 5180004.516736663 5393524.531710361 5297098.193562698 0.9289433367727697 0.9345305736057381 0.9634005370383624 0.7900175209561379 0.8378201136132075 0.9341202079551041 0.9565650955741426 0.9778947505695981 1.018203615380369 1.0 22.33677082178672 2.087790471783912 1.7450222677257066 0.9987174091346279 0.8929042634493864 0.48361936831582486 0.048072824414408376 0.3585330844248892 2.0811270492738467 0.030971154317708353 0.016706986163553185 122.40255176628023 -2.087790471783912 -0.10581314568524147 KEIIDAS(ph)DKEGMS(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEIIDASDKEGMSPAKR 17 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 KEIIDAS(1)DKEGMS(1)PAKR;KEIIDAS(1)DKEGMS(1)PAKR 73.34100000000002 0.03253 360506000.0 383240.0 227300.0 214951.0 204970.0 214806.0 323390.0 303780.0 330070.0 572040.0 309050.0 True False 381176.6784219665 234865.54309424866 245214.23241241483 230919.1809839522 242160.2708450885 301034.8104781766 289085.0008477055 354701.499461499 431068.4069432855 289326.1644089832 1.3174635595111475 0.8117673822345685 0.8475356278728632 0.7981275438937885 0.8369801996295698 1.0404686734540964 0.9991664647344622 1.2259572174748188 1.4899046818798576 1.0 18.142337269727317 1.834508943279373 2.214083434358862 1.2761535131021067 0.9207281669812043 0.3415505634824275 0.18252975289342752 0.2931893282788959 2.7152604371170734 0.10968112036855712 0.051048053898372345 68.31387854803981 -1.834508943279373 -0.3554253461209024 KEIIDASDKEGMS(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEIIDASDKEGMSPAKR 17 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 KEIIDAS(0.011)DKEGMS(0.989)PAKR 103.03 0.0050768 138350000.0 112320.0 89181.0 77059.0 79590.0 87315.0 137820.0 128630.0 112990.0 210040.0 131640.0 True False 111715.28159992512 92149.33567394718 87908.23739116488 89666.08583945342 98434.04769344856 128292.82779338343 122407.67548568179 121421.88755159455 158278.4563918042 123238.62249732582 0.9064957018839548 0.7477309775670914 0.7133172670205107 0.7275810457991698 0.798727263407902 1.0410115367539692 0.993257413992419 0.9852583961998546 1.2843251018587027 1.0 16.911094936258234 2.7592614880414743 3.997344587264388 1.0503532937688533 0.7669504604648559 0.6900826903243367 0.09442794941441653 0.13119830517296438 4.856507840489657 0.0305696412536383 0.03111815346485293 574.462240934672 -2.7592614880414743 -0.2834028333039974 KEIMDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEIMDLK 7 1 A0A087X0P0;Q02224-3;Q02224 A0A087X0P0 CENPE Kinesin-like protein;Centromere-associated protein E 0 93.178 0.024253 1015400000.0 1965400.0 1575100.0 1502800.0 1251100.0 1249800.0 1806100.0 2073500.0 1640600.0 2927200.0 2143900.0 False True 1954818.5047764687 1627526.2513319436 1714381.1774282379 1409489.1317218267 1408954.6218550282 1681248.5581020862 1973196.8834607876 1763029.9027979977 2205830.7824704302 2007074.466514864 0.9739641141321808 0.8108948016054542 0.8541691930370344 0.7022605066414402 0.7019941937189672 0.8376612757280748 0.983120913738242 0.8784078180513991 1.0990278732909655 1.0 20.936662713916434 1.8751584289081038 1.2968487395509067 1.0194251478478766 0.8059852941257503 0.4763920145423781 0.08926497380789106 0.40418422443485935 1.2628675502703803 0.07102496472303703 0.030252652978578685 75.01678176745993 -1.8751584289081038 -0.21343985372212637 KEKDECT(ph)PTRK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEKDECTPTRK 11 3 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 KEKDECT(0.987)PT(0.013)RK 66.285 0.064929 24721000.0 68305.0 36107.0 34460.0 35159.0 35272.0 48035.0 50985.0 47628.0 97191.0 54944.0 True False 67937.25346939893 37308.799667857566 39311.668468310505 39610.12579506651 39763.68012647674 44714.45351222734 48518.66076838595 51182.24321008356 73239.58034267691 51437.42688007501 1.3207747274721349 0.7253239893753247 0.7642619557927074 0.7700642936011645 0.7730495582367428 0.8692980233338246 0.9432559852090953 0.9950389495456994 1.4238577779839774 1.0 15.650530854248657 1.5174576084839857 3.231376727759688 1.2140865382709034 0.8621565679972626 0.31290578533101276 0.18921107687580402 0.22699215795985841 5.047380704382263 0.12667876208011708 0.04757874879006849 32.9198318693232 -1.5174576084839857 -0.3519299702736408 KEKPELSEPSHLNGPS(ph)SDPEAAFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 KEKPELSEPSHLNGPS(0.855)S(0.145)DPEAAFLSR 176.98 1.2579e-17 393340000.0 163460.0 157980.0 140740.0 146100.0 130880.0 194140.0 218510.0 175010.0 282720.0 197710.0 True False 162579.94952211343 163238.26879907338 160554.96866599025 164596.2450200295 147546.79221346317 180719.5587564032 207939.83651073853 188070.13488277313 213047.44425390812 185091.9785319531 0.878373826956778 0.8819305412032914 0.8674334238545787 0.8892673055067845 0.7971538982062998 0.976377043401721 1.1234405626867354 1.016090142719534 1.1510355334881732 1.0 17.497882847857444 2.4930136360160695 4.917712953689246 1.0685810664530493 0.8664247987513813 0.8087736432342288 0.04810917737448999 0.0739415459162171 4.964865124469156 0.015290352333527008 0.01359013897037403 311.1814040581158 -2.4930136360160695 -0.20215626770166795 KEKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 KEKPELSEPSHLNGPS(0.014)S(0.986)DPEAAFLSR;KEKPELSEPSHLNGPS(0.02)S(0.98)DPEAAFLSR;KEKPELSEPSHLNGPS(0.251)S(0.749)DPEAAFLSR 214.46 2.3126e-34 2163490000.0 940180.0 1131390.0 1093360.0 1109660.0 1132350.0 1408910.0 1494160.0 1269500.0 1944460.0 1608250.0 True False 935118.1753438173 1169047.6322103038 1247295.5843445165 1250142.8422239975 1276548.0605357203 1311515.3679173994 1421881.7725545077 1364236.5363903807 1465273.8874290963 1505610.108107901 0.6210891985302753 0.7764610677856335 0.8284319941980145 0.8303230932708409 0.8478609791880033 0.8710856554792793 0.9443890984109993 0.906102136963477 0.9732093850449137 1.0 20.521916788255247 6.2782347533146545 0.2646486126357603 0.9858637776703227 3.1832504778284242e-18 0.9103270875390465 0.03110115873862034 5.831458289164119 0.17824254447197097 0.0386966271058516 2.1672903515929685 1897731.442791407 -6.2782347533146545 -0.9858637776703227 KEKT(ph)PELPEPSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEKTPELPEPSVK 13 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KEKT(1)PELPEPSVK 199.49 5.5949e-06 1940900000.0 1912400.0 1106700.0 923790.0 841310.0 903000.0 1727500.0 1733300.0 1600400.0 3219900.0 1592900.0 True False 1902103.850887614 1143535.840485722 1053851.6022733767 947819.7597385412 1017991.6974996731 1608081.9910975914 1649453.6571509906 1719829.9746665326 2426398.789449486 1491239.7582496987 1.2755184673456907 0.766835670897023 0.7066949472365904 0.6355917983644819 0.6826479054545278 1.078352412616086 1.1060955476985077 1.1532887083731829 1.6271017293003267 1.0 20.508080798930774 2.314859260429303 1.7005913138340092 1.2593687650192675 0.7994626627602305 0.4168025582709428 0.22703797060622732 0.3497647352115309 2.0436592773673485 0.11407780539743427 0.07644085158465823 206.47109471653505 -2.314859260429303 -0.45990610225903705 KELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 34 2 Q01105-2 Q01105-2 SET Protein SET 1 KELNS(0.001)NHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR;KELNSNHDGADET(0.765)S(0.235)EKEQQEAIEHIDEVQNEIDR 232.47 1.0467999999999996e-37 757600000.0 254550.0 177989.0 184233.0 180932.0 223183.0 322661.0 245186.0 245538.0 364631.0 301525.0 True False 253179.5310831637 183913.25626837724 210171.40501805715 203837.97264862392 251604.0321407193 300356.2045322951 233325.41647852247 263861.29237670026 274772.57585507527 282281.41635145986 0.8969047072087015 0.6515244915711792 0.7445456655792716 0.7221090756992361 0.8913234012807095 1.0640310949776832 0.8265702343933835 0.9347455308505846 0.9733994515351462 1.0 18.1067746283038 3.129257197174609 4.59488222728306 0.9458030268286519 0.7462375358059782 0.5896048816401073 0.08048289206431963 0.14710153285713998 5.278032364866669 0.022789291206538206 0.02768082064039471 1346.6576333532478 -3.129257197174609 -0.19956549102267374 KELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 34 2 Q01105-2 Q01105-2 SET Protein SET 1 KELNSNHDGADET(0.177)S(0.823)EKEQQEAIEHIDEVQNEIDR;KELNSNHDGADET(0.422)S(0.578)EKEQQEAIEHIDEVQNEIDR 191.25 1.0924e-20 1056330000.0 685990.0 575080.0 583670.0 433940.0 527530.0 855470.0 750310.0 688950.0 983790.0 808720.0 True False 682296.7060606533 594221.1901567996 665845.6626494136 488876.7595071294 594707.8185847212 796333.3724597715 714014.638837456 740362.947417214 741348.1366106131 757106.7972199745 0.9011895132443444 0.784857819714107 0.8794606851957171 0.6457170392634688 0.7855005671173906 1.0518111518531248 0.9430831178101309 0.9778844281094262 0.9791856833577169 1.0 19.530137295060218 2.7497105022022397 24.908186551610925 0.9841793825234842 0.7944562339751298 0.6569215750367609 0.06891389697418422 432.6341370313393 966478.6798709795 0.021088853916481912 0.022176716820262822 561.9665971325135 -2.7497105022022397 -0.18972314854835448 KELNSNHDGADETSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KELNSNHDGADETSEK 16 1 Q01105-2 Q01105-2 SET Protein SET 0 ; 179.14 1.7365999999999996e-09 1317780000.0 886400.0 963450.0 885820.0 842690.0 944270.0 1253200.0 1110460.0 1149460.0 1397100.0 1199770.0 False True 881627.7208882978 995517.8508321766 1010535.7563145338 949374.4675970487 1064517.187373219 1166569.2337154837 1056742.8074308494 1235238.5420396128 1052803.4251808699 1123199.6514252261 0.7849252087726362 0.8863231479541199 0.8996937944489803 0.8452410632360766 0.9477542002639112 1.0386125318283583 0.9408325635517695 1.0997497555062634 0.937325277696596 1.0 20.0991829623521 3.050135100489619 3.3084526976867394 1.0113299611075957 0.8595266622245 0.639730008248472 0.05246647338223818 0.14722251448862492 3.315672091392406 0.01562570642378206 0.01858046811373768 1122.3675465168017 -3.050135100489619 -0.15180329888309563 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 34 2 Q01105-2 Q01105-2 SET Protein SET 0 266.81 1.3474999999999995e-60 279680000.0 142480.0 158870.0 140370.0 136890.0 159320.0 172590.0 178130.0 170880.0 228400.0 188900.0 False True 141712.9035110162 164157.89191105685 160132.87588208797 154220.25996435207 179608.45763637658 160659.2595331594 169513.1713773184 183631.9333110581 172113.8804032 176844.2402745737 0.8013430535876569 0.9282625866478905 0.9055023541250812 0.8720683225244149 1.0156308023236214 0.9084788924067586 0.9585450513634322 1.0383823246148454 0.9732512641405272 1.0 17.43211970640962 7.710495673390108 0.2456485557818525 1.0163280136234698 1.4290629313869972e-16 0.5997658141915239 0.04319149724103411 28.847045927351306 0.44289077332883925 0.05637432619279041 11.713831771191648 51344706.2318922 -7.710495673390108 -1.0163280136234696 KELNYFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KELNYFAK 8 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 131.5 0.001607 1749510000.0 3510800.0 3795700.0 3536900.0 3007400.0 2473960.0 3931900.0 4050000.0 3205100.0 5752400.0 4425400.0 False True 3491898.2428865493 3922037.579950897 4034864.7767140856 3388136.5316443285 2789004.1416902468 3660097.007697029 3854086.0274975593 3444280.837168023 4334798.098210882 4142967.183224443 0.8428496023395553 0.9466735811550412 0.9739070087380653 0.8178043372787146 0.6731900153550296 0.8834482258313233 0.9302719179392464 0.8313560510724014 1.0463027840923276 1.0 21.98223296198335 1.2365729473666223 24.99996019397355 1.0231514619383941 0.8636239739412661 0.389327626849155 0.08050083996675894 58.030279241353085 729782.9204911714 0.06960116454300311 0.020736621760951608 17.241416665046973 -1.2365729473666223 -0.15952748799712801 KELQAAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KELQAAGK 8 1 P06744;A0A2U3TZU2;P06744-2 P06744 GPI Glucose-6-phosphate isomerase 0 ;; 99.653 0.01068 2699880000.0 3998370.0 3847050.0 3484100.0 3021040.0 2826760.0 4282740.0 4834080.0 3896810.0 6656000.0 4941200.0 False True 3976843.220180669 3975096.7336591645 3974630.9956599167 3403503.3542457893 3186731.130480817 3986684.2642855523 4600237.082421081 4187609.7498002336 5015717.985830553 4625848.385625847 0.8597002946612199 0.8593227452095493 0.8592220635701132 0.7357576536277503 0.6888965795729757 0.8618276977415853 0.9944634365267248 0.9052630784036554 1.084280669772094 1.0 22.141286551059146 2.3704463580838597 4.247126997100934 0.9791085100838026 0.8011099192303776 0.652319450645916 0.06685671951365692 0.15682289531621882 5.086997765949129 0.025749481921250688 0.02120961741343491 234.66393994407372 -2.3704463580838597 -0.17799859085342506 KELQAEATVSGS(ph)PEAPGTNVVSEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KELQAEATVSGSPEAPGTNVVSEPR 25 1 Q9BZV1-2;Q9BZV1;K7EJ02 Q9BZV1-2 UBXN6 UBX domain-containing protein 6 1 KELQAEATVS(0.006)GS(0.994)PEAPGTNVVSEPR;KELQAEATVS(0.004)GS(0.996)PEAPGTNVVSEPR 225.18 4.6744999999999995e-34 938650000.0 538050.0 552450.0 512970.0 489660.0 498020.0 658980.0 599050.0 567960.0 730780.0 702110.0 True False 535153.198582975 570837.9642869224 585191.7171848305 551650.9057940295 561439.8950041943 613426.2636720634 570071.6629067692 610344.059242442 550689.0609503087 657300.7386933867 0.8141679555187746 0.8684578164656576 0.8902952373796233 0.839267131953369 0.8541598418408155 0.9332505313952042 0.8672919857658832 0.9285613469044819 0.837803806587825 1.0 19.326194080829 -4.999999999997776 0.13113618167995783 1.4118261128332517 0.8236073164225656 0.5581568078617084 0.03537696174586609 103.53341230894992 0.8542757423373756 11.250602535145665 0.24942220255245356 1.0000000000051209e-05 4.999999999997776 -0.5882187964106861 KELS(ph)EESEDEELQLEEFPMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KELSEESEDEELQLEEFPMLK 21 1 Q99543;Q99543-2;H7C3L7;F2Z3H0;F2Z3N9 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 1 KELS(0.5)EES(0.5)EDEELQLEEFPMLK 84.10700000000001 0.0018959 52301000.0 57518.0 37319.0 38330.0 34092.0 32981.0 46459.0 45269.0 45426.0 68099.0 49949.0 True False 57208.32947885056 38561.140355188094 43726.53082966749 38408.04370446848 37180.934856297594 43247.39868272237 43079.16552562643 48815.91878855409 51316.91392984897 46761.21205650966 1.2234141709097668 0.8246394534980829 0.9351025969306603 0.8213654440362538 0.7951234200551824 0.9248562383382847 0.9212585309714901 1.0439404079081904 1.097424803014812 1.0 15.513024704740944 1.7348495181547607 3.7226499495924696 1.0563164895097543 0.9079148501897274 0.1963165824818025 0.11514992661689939 0.2899232084182488 8.742148554790443 0.06169784759396137 0.03013773695660848 54.30621293521914 -1.7348495181547607 -0.14840163932002692 KELS(ph)PAGSISK ddPTM_BT-474_Trastuzumab_2h_R1 2 KELSPAGSISK 11 1 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-2;O95453-3;O95453;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 KELS(1)PAGSISK;KELS(1)PAGSISK 183.31 3.3081e-06 1168920000.0 2962500.0 2403700.0 2227070.0 1879130.0 2034030.0 2972400.0 2934200.0 2842900.0 4301800.0 3047000.0 True False 2946550.2291646916 2483705.7014326677 2540622.0979605457 2117027.6653284626 2293051.663859649 2766924.9842769783 2792261.536267492 3055051.6339536924 3241679.0311667435 2852537.851332059 1.032957451480874 0.8707003485590361 0.8906532464675773 0.7421558540721439 0.8038637113224826 0.9699871232155247 0.9788692321693752 1.070994249042853 1.1364192870054173 1.0 21.443814599595097 2.2114206379470063 1.7947637180789742 1.0721557705343778 0.8654708751180686 0.5355618198583003 0.07899809657956922 0.27194242178465133 1.7401622356576947 0.04295925354529889 0.026399204922376393 162.71239512915588 -2.2114206379470063 -0.2066848954163092 KELSDIAHR ddPTM_BT-474_Trastuzumab_2h_R1 6 KELSDIAHR 9 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;;; 162.36 4.144e-05 10302650000.0 10508400.0 11216100.0 10883600.0 10104000.0 9667100.0 14015300.0 13686700.0 11017900.0 15000900.0 13242000.0 False True 10451823.94199299 11589421.108224371 12415916.278052948 11383165.364013547 10898147.883609189 13046455.299467476 13024622.032728603 11840111.645762568 11304129.196761634 12396884.222953439 0.8431008755120037 0.9348656404135799 1.0015352289137516 0.9182279320586909 0.8791037883076083 1.0523979303857114 1.0506367405297596 0.9550877004917108 0.9118524456194795 1.0 23.56347422990938 2.7470586527957614 24.940029406186113 0.9929777125870566 0.9213960680263362 0.3414126840522115 0.0542716597174974 842.4872335413729 2472531.4663551995 0.017758889004634862 0.018574838133319393 558.5456229350311 -2.7470586527957614 -0.07158164456072036 KEMQPTHPIR ddPTM_BT-474_Trastuzumab_2h_R1 9 KEMQPTHPIR 10 1 B7Z2E6;H0YB80;P63104-2;P27348;P31946-2;P31946;P63104;E7EX29;B0AZS6 B7Z2E6;P27348;P31946-2;P63104 YWHAZ;YWHAQ;YWHAB 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;;;;;; 155.97 7.6422e-06 7923040000.0 8309310.0 8801230.0 8294970.0 7859320.0 8081610.0 9325800.0 9277410.0 8417090.0 10650240.0 9074130.0 False True 8264573.598211128 9094173.620094124 9462829.674828257 8854309.106165772 9110755.130044667 8681129.396571873 8828626.235152138 9045215.996916976 8025631.057904439 8495011.254646461 0.9728737667876199 1.0705310855379906 1.1139278561464454 1.042295158976133 1.0724829970132665 1.021909110694069 1.0392718703372172 1.0647679827345222 0.9447463714088327 1.0 23.018184428094692 1.2452055156617456 24.999959435293846 0.9723731769847437 1.052230801486015 0.40997330915059127 0.03703895551985721 126.95471181440789 477652.85428183083 0.02535307492349664 0.008785375063151437 17.587556906843588 -1.2452055156617456 0.07985762450127143 KENALVQMADGNQAQLAMSHLNGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KENALVQMADGNQAQLAMSHLNGHK 25 1 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20;K7EK45 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ; 189.39 4.2185e-18 748050000.0 741650.0 723040.0 711990.0 731940.0 681070.0 959390.0 920180.0 358970.0 1043850.0 795780.0 False True 737657.0388050615 747105.9493130901 812232.0032719802 824603.5289525009 767800.2274818415 893069.6274611385 875667.3779710381 385758.1642127259 786607.1543733802 744992.6390984646 0.9901534593653434 1.0028366860338147 1.090255071855319 1.1068613106706335 1.0306145150789368 1.1987630220640377 1.1754040671203227 0.5178013096606459 1.0558589616741374 1.0 19.506866645530263 1.770497013391569 24.999999999999556 0.8085515179662379 1.0851537982426398 0.31204507579004404 0.14922278178607645 26.292933310176338 20592.660606631773 0.06585393644970275 0.03653056089114492 58.95179229839261 -1.770497013391569 0.2766022802764019 KENNS(ph)PEHLKDEVSIIQSMGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KENNSPEHLKDEVSIIQSMGYR 22 2 P38398-7;P38398;P38398-4;P38398-8;P38398-6;E7EUM2;B7ZA85;H0Y8B8;P38398-5;P38398-3;Q5YLB2;H0Y8D8;Q3B891;E9PH68;A0A494C182;E7EWN5;H0Y881;A0A0U1RRA9;E7EQW4 P38398-7 BRCA1 Breast cancer type 1 susceptibility protein 1 KENNS(1)PEHLKDEVSIIQSMGYR;KENNS(1)PEHLKDEVSIIQSMGYR 211.14 1.9019e-23 364440000.0 247940.0 192662.0 173586.0 160842.0 148009.0 280490.0 273420.0 220800.0 359150.0 280890.0 True False 246605.11858872377 199074.63820336154 198025.39996344023 181204.58070849816 166857.06883192607 261100.38650243907 260193.6300341685 237277.21719968176 270642.294863438 262963.35971797217 0.9377926980139264 0.7570432565847531 0.7530532016925179 0.689086802445937 0.6345259241092753 0.9929154646581518 0.9894672410377849 0.9023204504770598 1.0292015402971024 1.0 18.004502268495408 2.7226285227882454 24.991996910472988 0.9712064629771958 0.7507604944108648 0.6764152867669192 0.07879240043031664 512.9592653028484 804656.2750836168 0.02634656312168038 0.024912231103104292 527.993435219525 -2.7226285227882454 -0.22044596856633103 KENPLQFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KENPLQFK 8 1 P15311;E7EQR4;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y7M3;P35241-3;A0A2R8Y5P0;E9PNV3;E9PQ82 P15311;A0A2R8Y5S7 EZR;RDX Ezrin;Radixin 0 ; 143.7 0.00095755 2217000000.0 2413700.0 2427600.0 2408300.0 1911880.0 1663080.0 2690900.0 2710700.0 2259900.0 3714500.0 2496700.0 False True 2400704.9073872804 2508401.198484813 2747367.706681147 2153923.811970525 1874863.3801525538 2504884.416697251 2579573.085120404 2428545.213539677 2799111.2467499385 2337358.46846759 1.0271017217830611 1.0731777912223115 1.1754156428056866 0.9215205288483936 0.8021291579557092 1.0716731945440503 1.103627500839276 1.0390127343761142 1.197553257025689 1.0 21.15644757902102 -0.046560107172126 8.130247271835604 1.0000000120765569 1.0425145553061725 0.0146939592669999 0.1094986129619493 7436308.4679316515 914647.1845877096 0.10931674375801909 0.026513204767531273 0.898338252264759 0.046560107172126 0.042514543229615676 KENQWCEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 KENQWCEEK 9 1 E5RJR5;P63208 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ;;;; 187.42 6.5033e-05 4774900000.0 3863670.0 3246230.0 2992630.0 2840890.0 2886510.0 4015000.0 3887060.0 3560460.0 5600530.0 4069870.0 False True 3842868.4300140874 3354278.8031625245 3413966.2915937356 3200546.3827169873 3254089.9388148165 3737452.500293383 3699028.0577888056 3826159.6048495425 4220354.424757152 3810127.412208993 1.0085931556252372 0.8803586967759218 0.8960241803605262 0.8400103294344717 0.8540632862794991 0.9809258578380519 0.9708410395767381 1.0042077838628642 1.1076675313359985 1.0 21.861407812157882 2.1352307915256157 1.3615175601854972 1.041989598825088 0.8947374584702967 0.5547260516414574 0.05338477818697539 0.32269951385303186 1.1380087201182238 0.03500708219507351 0.018482637610714305 136.53084921543177 -2.1352307915256157 -0.14725214035479128 KENS(ph)ESEKR ddPTM_BT-474_Trastuzumab_2h_R1 5 KENSESEKR 9 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 KENS(1)ESEKR;KENS(0.906)ES(0.094)EKR;KENS(0.944)ES(0.056)EKR;KENS(0.997)ES(0.003)EKR;KENS(0.961)ES(0.039)EKR 170.0 3.0282e-05 1426243000.0 1998270.0 1149860.0 1012763.0 931518.0 981230.0 1050920.0 1403130.0 1502350.0 2873090.0 1643810.0 True False 1987511.5363486663 1188132.3949949504 1155351.2273061988 1049448.0832893075 1106183.8242941352 978272.3739995817 1335255.2414228758 1614462.9857787238 2165055.4669335764 1538900.6384634534 1.2915138811906255 0.772065697614672 0.7507640184357729 0.6819466163436974 0.7188143253996092 0.6356956060375396 0.8676682613869655 1.049101511446975 1.4068845075633474 1.0 20.553468654126302 1.6307149779650907 3.019223742289422 1.2083084158416768 0.7942337995079025 0.39122602061493494 0.19573274868721183 0.19693577887640598 4.222123392577238 0.12383368684788516 0.05175082481541312 42.728237403711205 -1.6307149779650907 -0.4140746163337743 KENSESEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KENSESEKR 9 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 0 83.0 0.0094839 29812000.0 112390.0 93325.0 84159.0 70692.0 76183.0 61440.0 107110.0 102240.0 161150.0 120300.0 False True 111784.90472770276 96431.26620884615 96007.85567685853 79641.59995178587 85884.45347798184 57192.797414203116 101928.68010006494 109869.66796420037 121436.74179936788 112622.35100598843 0.9925641200809141 0.8562355993058487 0.8524760388970528 0.7071562548676605 0.7625880006129079 0.507828125619239 0.9050484134774023 0.9755582882331972 1.078265022126121 1.0 16.781133647197326 1.8380617418722764 3.1931969904335396 1.0217817426191516 0.7793732443908704 0.4297521145911314 0.12105931704049608 0.2450780060289206 4.388591204827554 0.06774440474277668 0.035044781826751 68.87502061874643 -1.8380617418722764 -0.24240849822828114 KENSETTLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KENSETTLTR 10 1 O00515;E9PDI4 O00515 LAD1 Ladinin-1 0 146.36 4.6187e-05 414780000.0 201900.0 218380.0 159980.0 189100.0 207070.0 220270.0 208610.0 177150.0 257610.0 241920.0 False True 200812.99283319854 225648.64628650228 182503.79342891232 213040.04061114002 233439.13709995282 205043.25335980658 198518.73733241114 190369.832549473 194125.46729714665 226480.45848186754 0.8866680780287983 0.9963272231037458 0.8058257858195034 0.9406552867261898 1.0307252937614588 0.9053463364311528 0.8765380406906274 0.8405574318665308 0.8571400314110929 1.0 17.789027049354956 2.477156262373861 20.299436994143434 0.8777656868451235 0.9329742247297359 0.04644168245514313 0.0697792689001078 0.2649911020270999 144641.06119802897 0.02362054390704457 0.020062941201472 300.02418340548576 -2.477156262373861 0.05520853788461244 KEPAITSQNS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 5 KEPAITSQNSPEAR 14 1 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 KEPAITSQNS(1)PEAR;KEPAITS(0.001)QNS(0.999)PEAR;KEPAITSQNS(1)PEAR;KEPAITSQNS(1)PEAR;KEPAIT(0.001)S(0.003)QNS(0.996)PEAR 247.28 5.0509e-18 5703190000.0 3672960.0 3494980.0 3357290.0 3128210.0 3352460.0 3625020.0 3618640.0 3439410.0 3978480.0 3816480.0 True False 3653185.191464216 3611308.2965399777 3829967.2499121977 3524241.0652574007 3779375.909412793 3374430.8997792075 3443592.5586527777 3696076.239170098 2998036.9129007147 3572908.9789470867 1.0224680261910244 1.0107473539961846 1.0719464930340499 0.9863786304167121 1.0577867870920548 0.9444491644378891 0.9638064050732079 1.034472543506918 0.8391025157837121 1.0 21.76866773057613 2.7340783946724834 24.92842649155872 0.965410157887306 1.0287252418325954 0.3246522226751619 0.05218224849640868 511.22409944183426 2843227.2577390443 0.016169930587694066 0.015717981318833184 542.0987360322549 -2.7340783946724834 0.0633150839452894 KEPAVLELEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEPAVLELEGK 11 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 105.14 0.0031698 0.0 962120.0 903990.0 833540.0 700270.0 740410.0 990870.0 1040600.0 867120.0 1372300.0 988560.0 False True 956940.0528215816 934078.7606765052 950895.1867404401 788924.1101996988 834696.8247461063 922373.4891570888 990262.2025219646 931828.8975461419 1034115.0528778957 925469.2544512027 1.0340052337978973 1.0093028549396899 1.0274735569733375 0.8524584759625815 0.9019174010713906 0.9966549236733427 1.070010913662587 1.0068718037518278 1.1173953623031154 1.0 19.819825536723297 2.4458888873760944 6.426372160543039 1.0444320873492416 0.9631748892757561 0.29628057523937446 0.06055185279990241 0.24824802704109186 31.724927541019273 0.022368547470604627 0.01888541717908824 279.18294706961177 -2.4458888873760944 -0.08125719807348553 KEPEKPIDR ddPTM_BT-474_Trastuzumab_2h_R1 6 KEPEKPIDR 9 2 O00422;O00422-2;U3KQ12 O00422 SAP18 Histone deacetylase complex subunit SAP18 0 ;;;;; 141.93 5.935600000000001e-05 6975130000.0 8058020.0 7266850.0 6250900.0 6112060.0 6320330.0 8105670.0 8155430.0 8094160.0 11809090.0 8350080.0 False True 8014636.515650185 7508722.709346411 7130972.386203207 6885846.169316376 7125186.561969122 7545344.111594787 7760920.694131948 8698187.320511661 8898898.003198873 7817170.745536839 1.0252605164376238 0.9605422414028075 0.9122190902986976 0.880861681734124 0.9114789472952474 0.9652269800941409 0.9928042954112258 1.1127027416508501 1.1383783587277583 1.0 22.898215119319108 1.963612181559018 2.618542107920139 1.0946105015017518 0.9374941459619378 0.6093485037469716 0.05001392149061495 0.17486994285428856 2.2182967781592393 0.027041545856518644 0.014710082839559532 91.96279910124612 -1.963612181559018 -0.15711635553981396 KEPFFHGHDNYDQLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEPFFHGHDNYDQLVR 16 1 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2 P68400 CSNK2A1 Casein kinase II subunit alpha 0 ;;; 221.31 4.344100000000001e-15 2868940000.0 2274710.0 2508370.0 2303650.0 2245700.0 2329370.0 2543640.0 2461130.0 1270810.0 3101790.0 2342060.0 False True 2262463.214104039 2591859.5791083123 2627983.8963152496 2530005.3897431935 2626001.46224232 2367804.153884501 2342075.7394703883 1365644.295242427 2337395.4163565747 2192587.7256615544 1.0318689590499288 1.1821007427770254 1.198576396993341 1.1538901546025175 1.1976722443112258 1.0799130753913528 1.068178806284127 0.6228459090868897 1.0660441947203405 1.0 21.06420313552667 1.9595232309133368 11.414859726694745 0.8520371237604094 1.1422250294496856 0.44058966982649095 0.12010763804335664 0.7841994982409262 219.70107473638828 0.04773513776212304 0.03068943582917174 91.10101819492164 -1.9595232309133368 0.2901879056892762 KEPPAPHRHT(ph)PQPPPPQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEPPAPHRHTPQPPPPQPR 19 2 Q9HCM7;A0A3B3IRR3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 KEPPAPHRHT(1)PQPPPPQPR;KEPPAPHRHT(1)PQPPPPQPR 68.369 0.024557 240340000.0 152166.0 139894.0 137678.0 139727.0 133363.0 170389.0 165849.0 18547.8 156864.0 101210.0 True False 151346.75516323192 144550.28722229114 157061.86568137133 157416.42387346813 150345.9875455691 158610.40948256289 157826.25026529457 19931.931019820007 118206.96906991038 94750.69114975962 1.5973155797250973 1.5255855705983192 1.6576329288524647 1.6613749405232439 1.5867534655545417 1.673976279833873 1.665700253477201 0.2103618535965748 1.247557855626368 1.0 16.53184884647111 1.761255034826314 24.999999999999996 0.7522193772276567 1.6234752314252068 0.6850924558132765 0.2487803891825465 5.551964728767241 6120.740044626284 0.10487130936409908 0.05815837244614177 57.71052628464178 -1.761255034826314 0.87125585419755 KEPVDEDLYPEHYR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEPVDEDLYPEHYR 14 1 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 ;;; 126.88 5.3771e-05 1052230000.0 2391920.0 2541560.0 2200580.0 2094600.0 2115850.0 2869120.0 2709500.0 2358360.0 3356380.0 2898340.0 False True 2379042.1684872936 2626154.2881945386 2510402.536215748 2359776.1452358235 2385290.9558745115 2670784.487582008 2578431.1337048463 2534352.798709425 2529245.1221877947 2713365.4598062853 0.8767864866449432 0.9678586711212971 0.925198825371269 0.8696860707456247 0.8790894522718676 0.9843069528026949 0.9502704931936915 0.9340255989292204 0.9321431851529371 1.0 21.371651944825064 2.74102725565244 24.99891043869633 0.9534838012545277 0.9065890052643326 0.4102298946518753 0.033263693963718484 282.513717804261 2863233.6947179763 0.010779369397149165 0.01095086124033906 550.8422653323746 -2.74102725565244 -0.04689479599019508 KEQDDLLVLLADQDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEQDDLLVLLADQDQK 16 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ; 169.28 9.1049e-09 482200000.0 2529600.0 2022510.0 1859020.0 1769000.0 1728510.0 2614000.0 2477840.0 2410460.0 3725200.0 2485300.0 False True 2515980.9146649837 2089828.0227168847 2120753.8571084933 1992955.218620345 1948625.502818561 2433300.3326941268 2357977.4129319894 2590340.76526787 2807174.375122594 2326686.0262276228 1.0813581576128148 0.8981994128813469 0.911491208182903 0.8565638836330776 0.8375111557178898 1.0458223865466556 1.0134489081688005 1.1133177128620677 1.2065118986741894 1.0 21.14984510926132 2.290420710690562 1.7669097022595925 1.1090383209440768 0.9152585440323564 0.47294074725296065 0.08259487056754465 0.2910230300468095 1.8345921029640637 0.040965752855679556 0.02711711961559695 195.17343726239088 -2.290420710690562 -0.19377977691172044 KEQQLQER ddPTM_BT-474_Trastuzumab_2h_R1 2 KEQQLQER 8 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 ; 153.97 0.00069352 184236000.0 197277.0 202872.0 191123.0 174078.0 173202.0 199971.0 203344.0 189933.0 255570.0 192647.0 False True 196214.88255153515 209624.4718812861 218031.45712910345 196116.2569513805 195258.24805131624 186147.4754511004 193507.47387048497 204106.76492023162 192588.19796254716 180352.1035266053 1.087954499641252 1.1623067753704497 1.2089210653256381 1.0874076493510356 1.0826502393553288 1.0321336530662655 1.0729427053338416 1.1317126938312758 1.0678455875849366 1.0 17.460456724452808 -4.999999998819611 0.03765023856952957 0.4652286365668018 1.428449691371041 0.4088216285460039 0.04436311160379275 1008.709422424855 2.843175575336036 63.2921116276416 20.42791802774252 1.0000000027179464e-05 4.999999998819611 0.9632210548042391 KEQSEVSVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 KEQSEVSVSPR 11 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 KEQSEVS(0.006)VS(0.994)PR;KEQSEVS(0.001)VS(0.999)PR;KEQSEVSVS(1)PR;KEQSEVS(0.002)VS(0.997)PR;KEQSEVSVS(1)PR;KEQSEVSVS(1)PR 182.35 3.5668e-06 8052910000.0 5934600.0 5725700.0 5402950.0 5095010.0 5309610.0 6480280.0 6615720.0 5732480.0 7394190.0 6275120.0 True False 5902648.772996041 5916276.463241263 6163638.396716719 5740037.74359685 5985757.36097591 6032313.496538292 6295692.349095346 6160266.7665436305 5571990.951569779 5874636.469199477 1.0047683467638264 1.0070880971546246 1.0491948615088729 0.9770881608916018 1.0189153647819804 1.0268403037644134 1.0716735209239672 1.048620931497924 0.9484826815724755 1.0 22.486068147757543 2.9022380212246386 4.888312972260037 1.0284447668463537 1.0107098427843004 0.0 0.034866987775739884 0.7935621875853952 30.479357288480674 0.010928633812843438 0.011729048655893744 798.4321593973858 -2.9022380212246386 -0.017734924062053237 KEQTPEHGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KEQTPEHGK 9 1 O76021;J3QSV6;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 0 ;; 90.827 0.0072488 596680000.0 1331960.0 1160060.0 1133380.0 940630.0 968050.0 1087170.0 1255280.0 1236710.0 1715980.0 1293160.0 False True 1324788.8753546693 1198671.8958289216 1292950.052484438 1059713.6615550334 1091325.4294181152 1012016.4968229029 1194557.3107647253 1328999.5800861346 1293099.7219539532 1210629.4216700222 1.0942976039085255 0.9901228851479542 1.0679982076603238 0.8753410767873082 0.9014529218302565 0.8359424268963004 0.9867241695785602 1.0977757159187695 1.0681218371268113 1.0 20.207325887422513 -0.0888024135024506 7.3050134456348985 0.9999999962827874 0.9902420442916209 0.0009013007526231798 0.08911163518216142 0.0 4.928080804093761e-18 0.094161603083457 0.022194102872968354 0.8150750259868405 0.0888024135024506 -0.00975795199116647 KEREEEFK ddPTM_BT-474_Trastuzumab_2h_R1 4 KEREEEFK 8 2 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8;Q9NYF8-2;H0YF14;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ;;; 144.77 0.00032625 1566890000.0 1560330.0 1362620.0 1195030.0 1327670.0 1178450.0 1516630.0 1587460.0 1609470.0 2683520.0 1680210.0 False True 1551929.356648962 1407973.9829788145 1363279.8366130318 1495752.8858709282 1328518.6222796123 1411788.9378630042 1510668.4951138955 1729576.8241230615 2022202.4533257226 1572977.5592998487 0.9866188792545423 0.8951011250316379 0.866687403487081 0.9509054194878062 0.8445884141353879 0.8975264329208921 0.9603878238328538 1.0995559433746258 1.2855888765672088 1.0 20.58506665818473 1.7369994659049264 2.8177268933175963 1.1551214955388784 0.9056154027032725 0.6359850233662376 0.07499885078602285 0.13092907281560986 2.182969048436837 0.0419614740855742 0.019242671049148667 54.57571899190182 -1.7369994659049264 -0.24950609283560599 KES(ph)EEELEAQISFLQGQLNDLDAMCK ddPTM_BT-474_Trastuzumab_2h_R1 1 KESEEELEAQISFLQGQLNDLDAMCK 26 1 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 KES(1)EEELEAQISFLQGQLNDLDAMCK 115.11 4.3003e-10 0.0 31767.0 28243.0 27645.0 24704.0 22679.0 28002.0 25262.0 24099.0 36810.0 24295.0 True False 31595.97000164548 29183.051181745963 31537.175705352427 27831.5238670418 25567.036221035538 26066.287649617785 24039.980549788488 25897.38975224243 27738.66872872935 22744.47230000403 1.3891713812872186 1.2830832387234938 1.38658638852425 1.2236610065047264 1.1240988968133154 1.1460493479821543 1.056959257295419 1.138623460269854 1.21957847000585 1.0 14.47322834225117 3.473646426513768 2.762341107946312 1.1191052090818845 1.3461528013997164 0.7522737594866669 0.06120998639913748 0.12942052209430424 1.9942589411647296 0.016756605753816524 0.025793550277587778 2976.092507629046 -3.473646426513768 0.2270475923178319 KES(ph)YSVYVYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KESYSVYVYK 10 1 P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880 P58876;Q99880 HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L 1 KES(0.94)YS(0.06)VYVYK;KES(0.852)YS(0.148)VYVYK 148.91 1.4869e-05 824820000.0 590280.0 564870.0 503460.0 416090.0 376740.0 716250.0 701460.0 650330.0 926000.0 686430.0 True False 587101.9980662738 583671.3564788743 574342.7918472319 468766.9513373313 424715.6058870727 666737.3233711426 667527.6999625773 698860.9269088273 697799.707764287 642621.4497177101 0.9136047331195918 0.9082662222608173 0.893749799511872 0.7294604802613586 0.6609110325739067 1.0375273400289176 1.0387572656589785 1.0875157174038026 1.0858643266122154 1.0 19.29360961099607 2.6076539315661194 7.770892742069227 1.0593567995833555 0.8252929050630101 0.6814430838406822 0.07815897825047306 0.17527977880118176 10.25916960217464 0.02790439920596173 0.026270015882407228 405.185533863321 -2.6076539315661194 -0.23406389452034537 KESEDQKR ddPTM_BT-474_Trastuzumab_2h_R1 3 KESEDQKR 8 2 C9JRZ6;Q9NX63;A0A286YEX5;F8WAR4 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 0 ;; 107.47 0.0022485 52004000.0 161782.0 139733.0 130893.0 108022.0 148215.0 163240.0 146722.0 164519.0 268541.0 217948.0 False True 160910.98368766982 144383.92843461773 149321.59665764857 121697.57412425494 167089.3017108684 151955.60302562712 139624.49632753007 176796.2431905547 202362.66881504262 204038.37204532957 0.7886309916838659 0.707631250863642 0.7318309549366282 0.5964445457211273 0.8189111686979521 0.7447403226284729 0.6843050889296001 0.8664852665619058 0.9917873132710808 1.0 17.638480969543767 1.4810733555193016 2.676968465155676 0.9973426487992296 0.7236796814301293 0.7844945819299805 0.0572830703740734 0.11134638785978782 1.5712588978653554 0.04403541936372624 0.015028458174722627 30.27424739133031 -1.4810733555193016 -0.27366296736910034 KESYSIYVYK ddPTM_BT-474_Trastuzumab_2h_R1 1 KESYSIYVYK 10 1 Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03 Q16778 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 127.17 0.00058218 13472000000.0 15268000.0 18282000.0 15614000.0 14581000.0 17044000.0 19481000.0 18223000.0 18459000.0 26526000.0 18073000.0 False True 15185798.784434257 18890505.318297617 17812315.480679084 16426953.1049764 19214452.372297257 18134324.323341344 17341483.87137977 19836504.312902745 19989022.73018948 16919565.666926242 0.8975288777133865 1.1164887852425252 1.052764345806935 0.9708850350152437 1.1356350836982168 1.0717960898245555 1.024936704213293 1.1724003265449319 1.181414648797002 1.0 24.01218919849598 4.7446465124881545 24.51313342297403 1.0846602801325447 0.8975287684565606 0.39762551321252615 0.0674782366442173 544.6381196106761 2193645.5941092726 0.01643147748949968 0.15091163070685604 55545.19713875248 -4.7446465124881545 -0.18713151167598407 KESYSVYVYK ddPTM_BT-474_Trastuzumab_2h_R1 5 KESYSVYVYK 10 1 P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880 P58876;Q99880 HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L 0 ;;;; 150.06 3.5676e-05 103952305000.0 54365236.0 61163370.0 56674540.0 51767000.0 55423670.0 61080940.0 65895550.0 65262060.0 89221740.0 64899960.0 False True 54072539.60992151 63199155.79641204 64653822.608067475 58320696.892209895 62481545.852670744 56858558.386866845 62707930.50105348 70132246.31122592 67234237.68706383 60757988.98914885 0.889965920688696 1.0401785320396166 1.0641205162273295 0.959885240813776 1.0283675758891513 0.935820281955375 1.032093582166666 1.1542884726443345 1.1065908994958937 1.0 25.856570783501898 1.9718891265044955 8.837753664081477 1.1015673841591915 0.992291057544847 0.3478240358451675 0.060485910340404445 0.3225212081790624 94.99756795248886 0.0239977349357901 0.015599421656639184 93.73226819670582 -1.9718891265044955 -0.1092763266143445 KET(ph)ES(ph)EAEDNLDDLEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK 262.78 5.7418e-27 6030550000.0 9278380.0 5290690.0 4650390.0 4167850.0 4837940.0 7472930.0 6986230.0 7644440.0 13411110.0 7021970.0 True False 9228426.233004931 5466787.418360354 5305124.490085511 4695499.3826607065 5454022.982283026 6956343.938485036 6648279.364909689 8214906.930479779 10106121.640167054 6573821.862789032 1.4038144667780286 0.8315995675673811 0.8070076434706949 0.7142723792440244 0.8296578605446244 1.0581886889666514 1.0113263644307313 1.2496394185823732 1.5373281861153743 1.0 22.64830093216879 1.8989486565818934 1.9203663231123351 1.299911629188926 0.9102291111634837 0.29888450986194814 0.2174265923126487 0.3673448888150316 2.5215782006857252 0.1364249810443047 0.06417157027543534 79.24076444592842 -1.8989486565818934 -0.3896825180254424 KET(ph)PPPLVPPAAR ddPTM_BT-474_Trastuzumab_2h_R1 5 KETPPPLVPPAAR 13 1 Q9BQA1;Q9BQA1-2 Q9BQA1 WDR77 Methylosome protein 50 1 KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR 84.859 0.005596899999999999 10059900000.0 5793730.0 5162150.0 4643100.0 4475610.0 4652350.0 5844500.0 5686590.0 5540720.0 7941610.0 5829000.0 True False 5762537.201423916 5333969.042164424 5296808.121451326 5042221.767105365 5244799.195861134 5440483.471473156 5411507.916816625 5954196.661606071 5984506.627621957 5456988.229542021 1.0559922358321705 0.9774565782070743 0.9706467924516418 0.923993520786563 0.9611160910092901 0.9969754821937282 0.9916656751284192 1.091114074494857 1.096668414130739 1.0 22.37967350121511 1.827563199075092 5.018437740973678 1.0705189977589344 0.9783741477989989 0.45551792594397167 0.03979708566709896 0.17469365527742348 6.767948770239856 0.018824249112776293 0.010751251630288344 67.23001359483993 -1.827563199075092 -0.09214484995993555 KET(ph)SFGSSENITMTSLSK ddPTM_BT-474_Trastuzumab_2h_R1 5 KETSFGSSENITMTSLSK 18 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 KET(0.446)S(0.446)FGS(0.091)S(0.016)ENITMTSLSK;KET(0.545)S(0.305)FGS(0.13)S(0.02)ENITMTSLSK;KET(0.322)S(0.322)FGS(0.322)S(0.034)ENITMTSLSK;KET(0.459)S(0.459)FGS(0.058)S(0.023)ENITMTSLSK;KET(0.506)S(0.28)FGS(0.185)S(0.029)ENITMTSLSK 238.28 4.1462999999999996e-24 2956770000.0 3889910.0 3461640.0 3309870.0 2985670.0 3183600.0 4177710.0 4103590.0 3987660.0 5590590.0 4369250.0 True False 3868967.156769631 3576858.5947944345 3775870.9260942256 3363655.5158723583 3589012.589324428 3888914.7409715317 3905083.674463877 4285239.438127183 4212864.00456797 4090400.7242968786 0.9458650673974465 0.8744518779169932 0.9231053827234202 0.8223290925733335 0.877423223599043 0.9507417495482716 0.9546946467292989 1.0476331604072353 1.0299391889757066 1.0 21.963810755923095 2.191741095077529 1.6755685801493303 1.0291616373857613 0.88777092178489 0.72457895456014 0.03556130749260042 0.18213375193842565 1.0038101341555257 0.019563455188354447 0.011525419510118673 155.50383181735978 -2.191741095077529 -0.14139071560087124 KETEGDVTSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KETEGDVTSVK 11 1 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 114.74 0.0019507 244970000.0 508890.0 445760.0 433560.0 406930.0 453220.0 625220.0 596990.0 558960.0 869230.0 624140.0 False True 506150.192782994 460596.85213239025 494601.47942892386 458447.29627652734 510934.8805545976 582000.0130095715 568111.3129767329 600672.4335413682 655019.9135852596 584306.8508468618 0.8662403873057591 0.7882790548576092 0.8464755782207174 0.7846002414862658 0.8744290432571122 0.9960520096008681 0.9722824782104539 1.0280085415236653 1.121020423833659 1.0 19.15636667904554 2.6793531956541083 1.4644875941771025 1.0385590940812472 0.8175216891946543 0.8422975132554337 0.042111275187477065 0.14651528720017049 0.6351038414093233 0.01807287762300957 0.016436576336149287 477.9177885313053 -2.6793531956541083 -0.22103740488659296 KETEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KETEIR 6 1 Q7Z3B4-2;Q7Z3B4-3;Q7Z3B4 Q7Z3B4-2 NUP54 Nucleoporin p54 0 86.866 0.085126 188420000.0 868230.0 844180.0 767090.0 766510.0 742140.0 726560.0 842480.0 785500.0 1014300.0 867470.0 False True 863555.5461494221 872278.0209824133 875089.6043341948 863550.0874079586 836647.1299915911 676334.6173382713 801726.0238138629 844117.9986881792 764339.3559236676 812107.3219215674 1.0633515088943175 1.0740920533981555 1.077554136888708 1.0633447871947144 1.030217444674626 0.8328143326401275 0.9872168396621018 1.039416806008927 0.9411802298680503 1.0 19.63131087004038 2.9907476933256008 24.607493937118846 0.9672141848770102 1.067514765812601 0.5111004548629098 0.050604439112037505 340.3789501250092 905277.9730714796 0.016034208152090054 0.018220516555314342 978.9211085326264 -2.9907476933256008 0.1003005809355908 KETES(ph)EAEDNLDDLEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KET(0.028)ES(0.972)EAEDNLDDLEK;KET(0.048)ES(0.952)EAEDNLDDLEK;KETES(1)EAEDNLDDLEK;KET(0.113)ES(0.887)EAEDNLDDLEK;KET(0.029)ES(0.971)EAEDNLDDLEK;KET(0.177)ES(0.823)EAEDNLDDLEK 253.83 8.8905e-27 27268820000.0 11393200.0 6832760.0 6185730.0 5545350.0 6150980.0 10298800.0 9515030.0 9487970.0 15748600.0 9199200.0 True False 11331860.277103508 7060184.28610936 7056627.016671004 6247390.741422456 6934270.8432852095 9586868.196767513 9054751.647955583 10196010.500335433 11867568.550428327 8612099.180168632 1.3158069873600342 0.8197983021801561 0.8193852473181606 0.7254202036837349 0.8051777735273864 1.1131859952151402 1.051398905020307 1.1839169855143012 1.378011133192262 1.0 23.03793350354292 2.6254056588257404 4.47651434365545 1.1572297362485588 0.8795819146620105 0.3281014048881642 0.17691922572796925 0.26167899352304114 8.524233413468604 0.05927079685079484 0.05561149783543349 422.0905789538198 -2.6254056588257404 -0.2776478215865483 KETKPEPMEEDLPENK ddPTM_BT-474_Trastuzumab_2h_R1 3 KETKPEPMEEDLPENK 16 2 P31948;P31948-2;P31948-3;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;; 176.33 1.8031e-09 3055520000.0 1416980.0 951080.0 920130.0 793340.0 789540.0 1282910.0 1268590.0 1228530.0 2257400.0 1368370.0 False True 1409351.1371212776 982736.1228599997 1049676.306086667 893776.7626570178 890083.2390297819 1194225.4513453026 1207223.4552155873 1320209.1469489376 1701094.0176102617 1281039.455079502 1.1001621624790725 0.7671396216278215 0.8193942051703034 0.6976965144305798 0.6948132904888108 0.9322315925633909 0.942378043415272 1.0305764913907391 1.3279013467268195 1.0 20.28888347964148 1.8490776058648666 1.5689187343893176 1.1544873597601286 0.8155477711021288 0.4783000242120876 0.1352192225692075 0.3090690664515785 1.436255142459877 0.09608910784921125 0.041176797462389 70.64437803255734 -1.8490776058648666 -0.3389395886579998 KETKPEPMEEDLPENKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KETKPEPMEEDLPENKK 17 3 P31948;P31948-2;P31948-3;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 124.18 2.2398e-05 533050000.0 139390.0 104600.0 93566.0 89541.0 93642.0 156460.0 140190.0 144640.0 287860.0 142970.0 False True 138639.53972768493 108081.54776796483 106739.2795097489 100876.88141915452 105566.75364038133 145644.28846722352 133408.47412219332 155433.7712670379 216920.76012637955 133845.53219722488 1.0358174639957047 0.8075095671382131 0.7974810795512083 0.7536813501590013 0.7887207881158556 1.08815203672703 0.9967346084112279 1.161292190448331 1.6206798730251315 1.0 17.03020945663937 2.0370404777374214 1.2928289816470009 1.2932516249858632 0.8383569457493155 0.5099265799628994 0.17196950049325846 0.34202468124318797 1.0652738357601508 0.11807398021111687 0.05683130392391758 108.9031590088222 -2.0370404777374214 -0.4548946792365477 KETQFHGSEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KETQFHGSEGR 11 1 O95163 O95163 IKBKAP Elongator complex protein 1 0 60.49 0.060579 70871000.0 46846.0 77257.0 79907.0 71554.0 70063.0 76216.0 78064.0 63025.0 71106.0 81957.0 False True 46593.78634107992 79828.4525421572 91157.21103590513 80612.72906340311 78985.10775406379 70947.36731316584 74287.74608656032 67728.24553446534 53582.87907158468 76726.43409308225 0.6072716253769035 1.0404295923007665 1.1880809021479597 1.0506513174534622 1.0294380116537332 0.9246795860093613 0.9682158041703934 0.8827237487969196 0.6983626921404884 1.0 16.227436085893114 1.6689709065982192 3.2324576667188842 0.8342226728221281 0.9882455621091983 0.09241268840225803 0.15621264288012715 0.4060487461446056 9.906567446321013 0.09457523228464278 0.04191173721979472 46.662811983396935 -1.6689709065982192 0.1540228892870702 KETQS(ph)PEQVK ddPTM_BT-474_Trastuzumab_2h_R1 11 KETQSPEQVK 10 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 KET(0.127)QS(0.873)PEQVK;KET(0.007)QS(0.993)PEQVK;KET(0.003)QS(0.997)PEQVK;KETQS(1)PEQVK;KET(0.003)QS(0.997)PEQVK;KET(0.005)QS(0.995)PEQVK;KET(0.026)QS(0.974)PEQVK;KET(0.004)QS(0.996)PEQVK;KET(0.007)QS(0.993)PEQVK;KET(0.001)QS(0.999)PEQVK;KET(0.001)QS(0.999)PEQVK 247.79 1.0182e-12 49630901000.0 14189994.0 9886452.0 9230654.0 8385449.0 8546936.0 11630617.0 12339455.0 12077720.0 17520257.0 11682827.0 True False 14113596.648960536 10215516.578333551 10530249.848917132 9447045.983620541 9635337.637941394 10826619.822317503 11742548.420354292 12979020.795819478 13202624.42176588 10937218.978688583 1.2904191345589036 0.9340140851379783 0.9627904378101564 0.8637521112111153 0.8809677905065324 0.9898878173156646 1.0736320122359178 1.1866838198183096 1.2071281051875702 1.0 23.382742612972653 2.088799495322123 3.1326882280618724 1.1489566221409715 0.9725509206145142 0.21272477311451354 0.12260518065432609 0.323593382928251 6.290263618665901 0.054079748865696615 0.03539680805881061 122.68726789332388 -2.088799495322123 -0.1764057015264573 KETQS(ph)PEQVKSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KETQSPEQVKSEK 13 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 KETQS(1)PEQVKSEK;KETQS(1)PEQVKSEK 176.42 8.6571e-06 1572650000.0 1251740.0 1098910.0 1089730.0 1212520.0 1184190.0 1655640.0 1777010.0 1581870.0 3410300.0 1854210.0 True False 1245000.7709213882 1135486.5550448783 1243154.5118970422 1366024.9076775226 1334989.5772559664 1541189.503757344 1691049.2374625767 1699917.1719731002 2569877.260678776 1735872.730330953 0.7172189234656751 0.6541300725591743 0.7161553322287795 0.7869383992322312 0.7690595940184185 0.8878470620732135 0.9741781225747868 0.9792867543054279 1.4804525791408774 1.0 20.72722974633976 2.1001768796308484 0.9613090643625187 1.1939115629119708 0.7122315480315543 0.6810279013401253 0.1283333916510817 0.3147981307798709 0.5409143240101132 0.09690479476541161 0.049512172149260125 125.9438251868788 -2.1001768796308484 -0.48168001488041645 KETS(ph)PQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KETSPQVK 8 1 Q9GZR2;A0A0C4DG22 Q9GZR2 REXO4 RNA exonuclease 4 1 KET(0.243)S(0.757)PQVK 60.255 0.049763 0.0 202540.0 178290.0 157190.0 130190.0 156630.0 167290.0 174670.0 193700.0 320590.0 223470.0 True False 201449.5471443094 184224.27487141892 179320.98568002705 146672.0406513184 176575.9020812556 155725.63605830137 166220.54479580195 208154.87758867035 241584.8901859102 209207.95327770727 0.9629153384857259 0.8805796910926973 0.857142297271999 0.7010825274726659 0.8440209815869898 0.7443581069386388 0.7945230675583214 0.9949663687611386 1.1547595892075146 1.0 17.674578172753037 1.5943965474509874 3.9056159844509764 1.0772392195775888 0.8227413072639014 0.6468433956221109 0.07696055686500822 0.10638952722181172 3.72688147114977 0.04748669850582325 0.02061670606714913 39.30036170340393 -1.5943965474509874 -0.25449791231368746 KETTSGTSTEPVKNSS(ph)PAPPQPAPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KETTSGTSTEPVKNSSPAPPQPAPGK 26 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 KETTSGTSTEPVKNS(0.033)S(0.967)PAPPQPAPGK;KETTSGTSTEPVKNS(0.216)S(0.784)PAPPQPAPGK;KETTSGTSTEPVKNS(0.089)S(0.911)PAPPQPAPGK 172.11 2.7111e-12 2813140000.0 1319410.0 1107130.0 1072470.0 1083370.0 1056050.0 1538700.0 1572340.0 1466450.0 2333970.0 1556380.0 True False 1312306.4431602303 1143980.152775783 1223464.4539236506 1220524.5309195714 1190531.7078012507 1432333.2907101966 1496279.9072779024 1575883.9454822168 1758794.3670956916 1457050.4959160455 0.9006595494380483 0.7851341844241057 0.8396856919872638 0.8376679698751479 0.8170833551329771 0.9830361368565272 1.0269238516247807 1.0815575368865036 1.207092253854895 1.0 20.47461944600271 2.4068859914652156 1.5659819126097638 1.1002190212515732 0.8305418834677392 0.8032543697315422 0.05696554229577599 0.15071304902126642 0.7485627536386608 0.026751332789657228 0.019159748544674008 255.20312698816812 -2.4068859914652156 -0.26967713778383406 KEVEGDDVPESIMLEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 KEVEGDDVPESIMLEMK 17 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 204.78 1.3589e-11 487050000.0 947420.0 775920.0 681400.0 661290.0 666740.0 950330.0 895450.0 914310.0 1384300.0 899760.0 False True 942319.1959882576 801746.0281464556 777335.1971650263 745009.246196408 751645.3869224056 884635.9239361931 852133.6625488122 982540.4549721071 1043157.8136696556 842336.5464767074 1.1186967963455388 0.9518119942675737 0.9228320917766584 0.8844555650738458 0.8923338184320254 1.0502167187645055 1.011630880926494 1.1664464270033623 1.2384097757991572 1.0 19.68403723614313 2.054294631950788 1.8312250648373893 1.1495918118233681 0.9539577409945825 0.40830044944696864 0.08733274365626324 0.3065803954879287 1.9438172634200395 0.0506379812362706 0.02687411642456035 113.31688614349626 -2.054294631950788 -0.1956340708287856 KEVLAS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KEVLASPDR 9 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 KEVLAS(1)PDR;KEVLAS(1)PDR;KEVLAS(1)PDR 90.412 0.0070117 911970000.0 2685320.0 2637270.0 2299740.0 2041990.0 1992740.0 2634080.0 2389030.0 2200390.0 2924230.0 2452940.0 True False 2670862.5354870963 2725049.937686618 2623523.402301581 2300505.7246300466 2246503.6271046526 2451992.249557363 2273463.4919191333 2364594.2751540183 2203592.699174473 2296391.2691324106 1.1630694522263025 1.1866662159520216 1.1424548758595319 1.0017917049036642 0.9782756350373141 1.0677589148315039 0.9900157357670414 1.0297000807041803 0.9595893908824181 1.0 21.130937044937426 3.8039340382606746 3.971775489759394 1.0068031564771012 1.1722414372196694 0.8698785146105975 0.028504238897170422 0.07136768627979741 2.240604920458739 0.007225654443715025 0.013476855485098005 6366.988101454767 -3.8039340382606746 0.16543828074256828 KEVLAS(ph)PDRLWGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEVLASPDRLWGSR 14 2 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 KEVLAS(1)PDRLWGSR;KEVLAS(1)PDRLWGSR 183.53 7.2914e-07 3590300000.0 1222710.0 1290980.0 1211170.0 1192800.0 1198720.0 1487410.0 1445300.0 1197580.0 1626120.0 1518830.0 True False 1216127.0652158526 1333949.4888861093 1381692.2083216393 1343808.3576994617 1351369.8866299086 1384588.8476865229 1375385.3174178312 1286949.5007880218 1225384.5148916438 1421896.9690642164 0.8552849409449225 0.9381477827918944 0.971724561190227 0.9450813855970545 0.9503993017998179 0.9737617266304134 0.9672890141421459 0.9050933568238727 0.8617955741885419 1.0 20.439385500100556 4.733844016970396 5.101215735918388 0.9442359135636541 0.8514283257225536 0.35174594083756305 0.03693199010537327 0.1843807758418068 15.725043069619952 0.009042992582611684 0.060074191587280716 54180.62580406943 -4.733844016970396 -0.09280758784110055 KEVQDEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KEVQDEEK 8 1 P15559-2;P15559;B4DLR8;P15559-3;H3BNV2 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 ;;;;; 123.63 0.0021479 4642340000.0 3620590.0 3243840.0 2428560.0 2922320.0 3043560.0 3560710.0 3816030.0 3660400.0 5758100.0 3986010.0 False True 3601097.1457253643 3351809.2534573143 2770480.1385780685 3292285.4123677798 3431139.325406541 3314566.4987097546 3631434.0502497517 3933557.6351345843 4339093.409586979 3731619.429205148 0.965022616599575 0.8982184054527943 0.7424337318257005 0.8822671965423472 0.9194772914282391 0.8882380857942345 0.9731523053580154 1.0541154342666852 1.162790979065951 1.0 21.83137042914865 1.9518959165544953 1.7877223045398312 1.0872341582103453 0.8756222116482199 0.6324067733519713 0.06486512062258448 0.22000936891569725 1.3066904814902394 0.041746534874844636 0.020101839472116106 89.51502072550831 -1.9518959165544953 -0.21161194656212545 KEVS(ph)PEVVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEVSPEVVR 9 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR 125.03 0.00031419 6591990000.0 9483810.0 8446820.0 7782130.0 7566310.0 7580510.0 9635190.0 9492400.0 9179340.0 12464340.0 9389450.0 True False 9432750.220710345 8727967.297489474 8877786.260513457 8524204.070208766 8545843.015297063 8969131.994097583 9033216.347510576 9864348.962544048 9392670.420599032 8790207.262287425 1.0730975890841183 0.9929193973542605 1.009963246100211 0.9697386894140834 0.9722003998655689 1.0203550071655076 1.0276454329200782 1.1221975396262847 1.0685379923743494 1.0 23.06746575207044 1.9581058223463559 6.482791467460702 1.0770161248142343 1.004274560456084 0.2790208680851476 0.03928183631689987 0.20791809783002732 23.8792864254477 0.016472256757396653 0.010361656559154086 90.80417611808662 -1.9581058223463559 -0.07274156435815016 KEVTEEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KEVTEEEK 8 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 0 85.53299999999999 0.026737 496030000.0 424760.0 325640.0 252540.0 225800.0 278820.0 301940.0 379910.0 355130.0 562190.0 384380.0 False True 422473.13935527205 336478.7305464628 288095.43688297 254386.25684820456 314326.0743043845 281067.59849030763 361532.30190286343 381631.6039136002 423645.8074600477 359848.5393157257 1.174030441136793 0.9350565412500993 0.8006019349996566 0.706925912029366 0.8734954848006193 0.7810719449487695 1.0046790869023383 1.0605339808778893 1.1772892235873362 1.0 18.457030276665275 2.036853728713696 4.368153926297199 1.0762699585031128 0.8696226354554785 0.35096060147533703 0.12364688085454745 0.2321380001694951 9.998352944104559 0.053443493020755434 0.03640424665828829 108.85634011641565 -2.036853728713696 -0.20664732304763433 KEVVEEAENGR ddPTM_BT-474_Trastuzumab_2h_R1 9 KEVVEEAENGR 11 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 0 ;;;;;;;; 214.81 2.1288e-11 43877640000.0 28236640.0 28095890.0 25327660.0 24707640.0 24080380.0 31319710.0 31641560.0 26599800.0 35396350.0 31361220.0 False True 28084617.067625653 29031044.71432584 28893574.376032785 27835624.690668616 27146873.657405518 29154652.166367043 30110936.860302642 28584812.14704756 26673393.829289824 29359720.089908708 0.9565696464960058 0.9888052278912619 0.9841229510210439 0.9480888988528218 0.9246298525419603 0.9930153311096399 1.0255866461973573 0.9736064260664565 0.9085030016501348 1.0 24.80733487807299 KEWDLKPIADR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEWDLKPIADR 11 2 P30038-2;P30038;P30038-3;Q5TF55 P30038-2 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 0 ; 145.0 2.0501e-05 1690240000.0 2809660.0 3090730.0 2916370.0 2432840.0 3121550.0 5704300.0 3248000.0 2920130.0 5525100.0 3908950.0 False True 2794533.102742571 3193603.0796642574 3326969.5464575365 2740837.294555297 3519060.8896235977 5309975.167477846 3090881.8314350797 3138044.928719685 4163513.13754693 3659477.4643795323 0.7636426593533857 0.8726937413196328 0.9091378697755219 0.7489695786444769 0.9616293374880115 1.4510200483986742 0.8446238189798886 0.8575117511351428 1.1377343290329176 1.0 21.803206230574624 3.0106612414844225 22.024792169542742 1.0348016382414649 0.8359848181386181 0.304196041871834 0.16496888151174516 78.92950817317414 163052.56822479976 0.050755072945015405 0.06056551112540197 1024.8522088583477 -3.0106612414844225 -0.19881682010284674 KEWLTNFMEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KEWLTNFMEDR 11 1 Q02880;Q02880-2;E9PCY5;P11388;P11388-2;P11388-3;P11388-4 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2;DNA topoisomerase 2-alpha 0 103.76 0.004314500000000001 464730000.0 237880.0 383080.0 390120.0 331060.0 292790.0 390350.0 367430.0 328430.0 519050.0 370660.0 False True 236599.2805109524 395830.58622324956 445045.50501617254 372972.16205565335 330075.07099770696 363366.02328506147 349656.00718109333 352939.1143337475 391137.0824136636 347004.16146200814 0.6818341299254319 1.1407084703408872 1.2825365065971939 1.0748348391103901 0.9512135808603129 1.047151774071288 1.0076421150337573 1.0171034054656118 1.1271826849733253 1.0 18.40459343892508 KEWSGLLEELAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KEWSGLLEELAR 12 1 Q01813;Q01813-2;Q5VSR5;V9GYV7 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 ; 115.82 0.0014573 1313490000.0 1524690.0 2461600.0 1797630.0 2035140.0 1803400.0 1986700.0 2546900.0 1844340.0 2430400.0 2095400.0 False True 1516481.2384489838 2543532.8679313776 2050720.6787199397 2292788.515332396 2033052.3004107536 1849364.1051887611 2423696.716897167 1981974.0161687573 1831460.4856914917 1961669.778037805 0.7730563295754451 1.2966162278727622 1.0453954593576955 1.168794330728691 1.0363886537745155 0.9427499602092154 1.2355273777636073 1.0103504873033533 0.9336232357738836 1.0 20.90365077210267 1.499561046146936 10.17323215657091 0.9685243313565228 1.079420537369248 0.08256957161518652 0.14045919372130983 0.2174515822480217 56.863302754072194 0.07016830215537831 0.03252811119402441 31.590830704041807 -1.499561046146936 0.11089620601272521 KEYEEDGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KEYEEDGAR 9 1 P61163 P61163 ACTR1A Alpha-centractin 0 ;;; 155.0 0.00011922 2657090000.0 1895630.0 2129850.0 1809600.0 1788170.0 1908990.0 2245100.0 2317850.0 2097540.0 2952820.0 2467280.0 False True 1885424.1387042901 2200740.769728487 2064375.9506748323 2014552.1386547983 2152088.561029792 2089901.5213969334 2205726.740453139 2254069.0858923006 2225137.0767608434 2309816.078055316 0.8162659168480935 0.9527774919556963 0.8937404022284211 0.8721699349979818 0.9317142526956872 0.9047913127163209 0.9549360927083804 0.97586518134814 0.9633395047774688 1.0 21.139346549172707 2.1611680754937237 0.5725801896318101 0.9993567787767332 0.8817583386698301 0.593914081280329 0.03333874160934831 0.57155905005739 0.38075295221733474 0.029193453776524637 0.02151879222857532 144.93326485344141 -2.1611680754937237 -0.11759844010690312 KFAETQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFAETQPK 8 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 108.15 0.0062 2372600000.0 8918600.0 8258900.0 7405400.0 7328000.0 6990000.0 9030500.0 9383000.0 9242700.0 12970300.0 9648200.0 False True 8870583.248549607 8533792.493889533 8448015.951109301 8255724.04864323 7880135.067024044 8406242.790510448 8929108.443459168 9932437.207479624 9773943.358115679 9032443.615760405 0.9820801131901479 0.9447933313416104 0.935296837764771 0.9140078144786974 0.8724256028871593 0.930672047134917 0.9885595552325475 1.0996401007307537 1.0820929278829325 1.0 23.10668491311234 1.9885419943638762 3.4398136209395154 1.068899461814367 0.9280310918684823 0.729034393689078 0.03551859358479107 0.11567029749132893 2.7657837919359993 0.017139347836489804 0.010279459160898754 97.39619586078028 -1.9885419943638762 -0.1408683699458847 KFAMEPEEFDSDTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFAMEPEEFDSDTLR 15 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 179.46 1.0739e-06 349070000.0 171084.0 215252.0 206203.0 187552.0 182984.0 190671.0 236600.0 206685.0 279770.0 232932.0 False True 170162.90275321915 222416.53269741818 235234.59005139384 211296.06396986003 206285.9277688596 177490.3625612553 225154.75410022793 222108.88422516402 210824.43222593362 218066.08033688157 0.7803272406709989 1.0199501561811712 1.0787307667840378 0.9689542896512708 0.9459789777950643 0.8139292561550954 1.0325069985776576 1.0185393523010864 0.966791496872138 1.0 17.73440585406476 KFAYLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFAYLGR 7 1 P40429;M0QYS1;Q8J015 P40429 RPL13A;RPL13a 60S ribosomal protein L13a 0 ; 119.57 0.021738 558010000.0 912020.0 1148530.0 1331890.0 857370.0 513990.0 799050.0 961660.0 646260.0 1706640.0 868460.0 False True 907109.7856549477 1186758.1267489537 1519408.5350045867 965912.9540918733 579443.5798425885 743813.5542613774 915140.831902051 694487.2028417854 1286061.4398043654 813034.1392739859 1.1157093433554568 1.459665799284507 1.8688127122944322 1.1880349267429329 0.7126928032321171 0.9148614041294499 1.125587214233394 0.8541919327790354 1.5818049669510534 1.0 19.63295640672138 3.4861215962098835 24.70731154939641 1.0086193447182954 1.4874231237084308 0.34964467763073326 0.27329618546916207 365.62822168623325 1003704.9055338186 0.0731758249532133 0.10453526725596794 3062.8208594496587 -3.4861215962098835 0.4788037789901354 KFDEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 KFDEGR 6 1 P07237;H7BZ94;I3L398;I3L312;I3L3U6;H0Y4J5;Q13087-2;Q13087 P07237 P4HB;PDIA2 Protein disulfide-isomerase;Protein disulfide-isomerase A2 0 ;;;; 124.34 0.029498000000000007 17721100000.0 21565200.0 24394600.0 21527620.0 20095490.0 19948350.0 19975750.0 23046510.0 22558830.0 26425800.0 21588930.0 False True 21449095.35931899 25206559.514152918 24558521.774572585 22639576.973562986 22488654.129366126 18594873.42035757 21931662.26508219 24242284.44601766 19913515.67757828 20211106.004187137 1.061252924747185 1.2471637875201325 1.2151003398569475 1.1201552734854165 1.1126879511050582 0.9200324522816944 1.0851292482726382 1.1994536291579185 0.9852759009552865 1.0 24.268644936107155 3.3474188829550253 2.613817702299472 1.0646004252524972 1.179755866822343 0.2968607887336804 0.08483172338890696 0.3985974789639536 5.521894050797328 0.026554203177905102 0.0379274162237061 2225.4553378748005 -3.3474188829550253 0.1151554415698457 KFDEVLVNHFCEEFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFDEVLVNHFCEEFGK 16 1 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 232.15 4.4208e-16 2150500000.0 3420200.0 2905900.0 2607500.0 2499100.0 2518800.0 3514300.0 3312900.0 3198400.0 4868000.0 3622300.0 False True 3401786.02321994 3002621.124846356 2974613.335203705 2815485.803761503 2839554.249902745 3271364.7127723685 3152642.3704930004 3437080.8491461165 3668346.627858039 3391121.712792946 1.0031447737150698 0.8854359646010409 0.8771768126110099 0.8302520647195096 0.8373495528605114 0.964685136611642 0.9296753810397643 1.0135527828977033 1.0817502108577428 1.0 21.693331135253892 1.9141445529839793 1.4609510600212021 1.042971195994118 0.8879122285734725 0.5650448545810588 0.05245460133074329 0.2896929868965859 1.1519965099008016 0.03835095175719708 0.017057086717956246 82.06246401343905 -1.9141445529839793 -0.1550589674206454 KFDGVEGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KFDGVEGPR 9 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YAN4 Q6PKG0 LARP1 La-related protein 1 0 73.499 0.070145 201540000.0 231750.0 251420.0 268090.0 214320.0 203750.0 238390.0 267240.0 183150.0 370050.0 254090.0 False True 230502.28374984555 259788.36271340022 305834.74171994714 241452.8900252752 229696.35477913436 221910.66040969858 254312.58024406125 196817.58301685573 278856.1359159549 237873.75866260665 0.9690109789570501 1.0921270348356358 1.2857018926317736 1.0150463480410425 0.9656229256667572 0.9328925630861634 1.0691073352263751 0.8274035106832283 1.1722862474774969 1.0 17.859836602293022 3.4961088665638673 24.104106876147327 0.9786528685457299 1.1194495975450929 0.1868786419890679 0.1105847526737414 650.92377231715 826322.9626760766 0.02877537116415505 0.04374428642868392 3134.0712576852443 -3.4961088665638673 0.14079672899936302 KFDGVEGPRT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 KFDGVEGPRTPK 12 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YAN4 Q6PKG0 LARP1 La-related protein 1 1 KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK 120.9 0.001729 1940620000.0 3551180.0 2602620.0 2359090.0 2486710.0 2377320.0 3396480.0 2994350.0 2998330.0 5648160.0 3561720.0 True False 3532060.841453187 2689246.633382988 2691229.366422134 2801527.231031877 2680057.6105204048 3161689.3320539184 2849501.8509721765 3222080.609811238 4256246.6494664475 3334407.98025809 1.0592767478860816 0.8065139746860955 0.8071086028932271 0.8401872979007905 0.8037581562868509 0.9482011051956507 0.8545750453583125 0.96631264946824 1.2764624708992585 1.0 21.66899920486783 1.4576742637695048 4.504615534197144 1.1390897937645261 0.8701768371134566 0.5322316420968807 0.09743449920400898 0.13153152562377557 5.265602796133885 0.061337431758991555 0.02351176808923975 28.686282022766985 -1.4576742637695048 -0.2689129566510695 KFDHES(ph)SPGTDEDKSG ddPTM_BT-474_Trastuzumab_2h_R1 2 KFDHESSPGTDEDKSG 16 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 KFDHES(0.498)S(0.498)PGT(0.004)DEDKSG;KFDHES(0.496)S(0.496)PGT(0.009)DEDKSG 102.38 0.00079393 333270000.0 339250.0 363670.0 361150.0 391750.0 395130.0 440260.0 476110.0 461650.0 604310.0 481270.0 True False 337423.51569421805 375774.53610684286 411996.7808279265 441345.5098329675 445447.4633810038 409825.8624605641 453078.7403831762 496100.6672112004 455385.8978391314 450554.93656402297 0.7489064891119461 0.8340260101743354 0.9144207451589703 0.9795598139456921 0.9886640390138232 0.9096024240372044 1.0056015451487448 1.101088073730839 1.0107222469072248 1.0 18.78134350028997 5.992794112540031 0.415739414442933 1.0379023861015795 1.5948028975132573e-17 0.8086699382199682 0.041785171390678805 6.382445605238713 0.3844129309659607 0.03266687291531359 4.077287962136156 983544.7228329706 -5.992794112540031 -1.0379023861015795 KFDLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFDLDK 6 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 120.49 0.032252 6377900000.0 15395600.0 13213700.0 12276300.0 10736800.0 10386600.0 14777900.0 15403800.0 12569900.0 19884800.0 14412000.0 False True 15312711.800211946 13653510.016649686 14004696.332487531 12096077.779131098 11709271.943798566 13756338.55643477 14658659.345769621 13507929.766658887 14984457.482668776 13492213.821266018 1.134929523283756 1.0119547612808684 1.03798357467577 0.8965228345303591 0.8678540155762109 1.0195760857830793 1.0864532344325204 1.001164815915391 1.1106003567072684 1.0 23.6856237513354 -0.1925540579585139 8.118031000049866 1.0000000000000133 1.012988910018592 0.0004703877525163991 0.08076633072360402 0.0 0.0 0.08062734469993926 0.019004047395464102 0.6418683212281463 0.1925540579585139 0.012988910018578714 KFDLGQDVIDFTGHALALYR ddPTM_BT-474_Trastuzumab_2h_R1 3 KFDLGQDVIDFTGHALALYR 20 1 P50395;P50395-2;Q5SX87;Q5SX91;P31150 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 ;; 252.4 2.8978e-36 3643377300.0 1055919.0 1531578.0 1387337.0 1490553.0 1453390.0 1512201.0 1687744.0 1408792.0 2045014.0 1753560.0 False True 1050234.0494276308 1582555.647871546 1582661.9906506252 1679256.8569701568 1638470.6015825572 1407666.1042082577 1606101.374911812 1513923.2127408246 1541047.7014836676 1641646.2995017543 0.639744413730522 0.9640052478733436 0.9640700260043645 1.0229102684785494 0.9980655407196051 0.857472224458758 0.9783480006620607 0.9221981697277335 0.9387209059292377 1.0 20.646711894416647 4.739279666434706 24.973265323315125 0.9574384354416573 0.6397443139810138 0.8233938312623565 0.04456275022920948 23.552495798316176 817842.7926924409 0.010740779236672241 0.0645684446441669 54863.014473632895 -4.739279666434706 -0.31769412146064346 KFDQLLAEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFDQLLAEEK 10 1 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749;P35749-2;P35749-4;P35749-3;Q7Z406;Q7Z406-6;Q7Z406-2;A0A0C4DFM8;A1L2Z2 P35579;P35580;P35749;Q7Z406 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 0 ; 148.18 4.099600000000001e-05 2506200000.0 6233100.0 5337600.0 6155000.0 4187700.0 3124200.0 5712500.0 6420600.0 5231400.0 11217400.0 6298300.0 False True 6199541.682162519 5515258.789352669 7021570.499780941 4717862.390625444 3522048.3514158144 5317608.320778576 6110011.048926127 5621793.63251094 8453022.075459087 5896337.101754076 1.051422531509985 0.9353703314744265 1.1908360018446238 0.8001344409602951 0.5973281870821218 0.9018494412737467 1.0362384211561593 0.9534383016938662 1.4336056316970809 1.0 22.49138757698755 1.3662916926800186 8.533929476488971 1.2162256889613556 0.92958285052118 0.28938058918783016 0.17791993512240012 0.310728626740801 21.870749662135534 0.12167865047213494 0.04447278704990732 23.242973800838065 -1.3662916926800186 -0.2866428384401757 KFDSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 KFDSSR 6 1 P62942;Q5W0X3;Q1JUQ5;Q5VVH2;A0A087WZM5;F8W6G9;P68106-2;P68106 P62942 FKBP1A;FKBP12-Exip2;FKBP1C;FKBP1B Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP1B 0 ;;; 131.04 0.024858 1453170000.0 2597280.0 2973630.0 2531130.0 2321610.0 2490200.0 2032730.0 2430140.0 2584240.0 3532550.0 2880810.0 False True 2583296.5330649386 3072605.476952707 2887491.103023643 2615525.587959962 2807312.2094282247 1892212.1596317252 2312584.8441636837 2777089.111304828 2662000.3862448502 2696954.239414471 0.9578570134085002 1.1392872122367907 1.0706489049108001 0.9698071809063442 1.04091948183656 0.7016107770677409 0.8574801939041291 1.0297131003260014 0.9870395082501623 1.0 21.362899612169514 2.9005199466812916 22.201227087134455 0.9165273654372771 1.0398207117482996 0.27212909816157327 0.09843460482409645 24.101176707649373 5370.664775827264 0.03193605395458722 0.03387334257476354 795.2797910452468 -2.9005199466812916 0.12329334631102251 KFDVNTSAVQVLIEHIGNLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 KFDVNTSAVQVLIEHIGNLDR 21 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;; 288.82 8.775299999999999e-47 18136900000.0 5289200.0 5829220.0 5863170.0 5525040.0 5247450.0 6133370.0 6409000.0 5563580.0 6447360.0 6245760.0 False True 5260723.534885363 6023242.063862101 6688653.372412776 6224509.497504889 5915681.653427091 5709384.568299992 6098972.185242437 5978762.590886799 4858494.518197783 5847150.249535843 0.8997072608666022 1.0301158353747173 1.143916794842707 1.0645372928460324 1.0117204793731251 0.9764388333878051 1.0430674644843587 1.0225088009943653 0.8309166535584508 1.0 22.479302232896174 1.3423380923459844 9.78918954922651 0.9158632935498519 1.0285062669226392 0.27752910515001616 0.06979868542559316 0.3440784966998031 29.17022451779353 0.04626572888822328 0.01691287191015047 21.995715429654542 -1.3423380923459844 0.11264297337278739 KFEEEDLDDILR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFEEEDLDDILR 12 1 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 0 ; 109.22 0.0025997 175388000.0 163245.0 179322.0 165865.0 164851.0 164981.0 184986.0 181250.0 179167.0 220210.0 192498.0 False True 162366.1070582247 185290.6243675617 189217.35027557536 185721.11969744615 185990.3524310007 172198.3532302049 172482.24505776126 192537.3513315913 165942.1961628225 180212.6128341706 0.9009697185159397 1.0281778919551197 1.0499672986246018 1.0305667110456047 1.0320606837998998 0.9555288640571439 0.9571041801412494 1.0683899883786812 0.9208134411519823 1.0 17.45934046137362 2.7650169565977696 24.827103063234155 0.9895633574071053 1.0129965975760373 0.048344373919902095 0.052991068050556 2690.220758851986 2524545.010444426 0.016434155884621948 0.017427984992518984 582.1259458579867 -2.7650169565977696 0.023433240168932 KFEEEGNPYYSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KFEEEGNPYYSSAR 14 1 Q9HCC0-2;Q9HCC0 Q9HCC0-2 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial 0 180.7 2.7625e-06 490950000.0 255450.0 233550.0 309070.0 233800.0 273010.0 389700.0 235250.0 229960.0 324520.0 337780.0 False True 254074.68558316294 241323.57056604384 352584.36951540125 263399.05602794624 307776.20524295256 362760.9562551264 223870.05875772878 247120.7829132193 244546.3943452118 316222.59121199255 0.8034678503182391 0.7631446243012501 1.1149879208947222 0.8329545811967813 0.9732897452498022 1.1471696404256424 0.7079508706183755 0.78147731939731 0.7733362547183426 1.0 18.270580913180765 -0.8135776749347229 4.360152772718631 1.0000008021675615 0.8761250708099922 0.060956929769403034 0.14410941588693157 8160269.871840583 3743161.753860103 59.58812646788341 0.0346910598321352 0.15361100306484446 0.8135776749347229 -0.12387573135756924 KFEEFQTDMAAHEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KFEEFQTDMAAHEER 15 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;; 223.9 7.824399999999998e-13 733470000.0 1110250.0 1024550.0 979780.0 839880.0 922570.0 1159060.0 1058870.0 1050790.0 1204940.0 1155760.0 False True 1104272.53736037 1058651.527396447 1117724.5075995743 946208.7218851637 1040053.820999196 1078936.9103337612 1007648.4128237873 1129205.285603505 907998.6823687904 1081998.4073040818 1.0205861024433358 0.9784224452180054 1.0330186255860654 0.874501030221243 0.9612341515276391 0.9971705161951683 0.9312845619934453 1.0436293417631217 0.8391867088151904 1.0 20.045266944851015 KFELLPTPPLS(ph)PSRR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFELLPTPPLSPSRR 15 2 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 KFELLPTPPLS(0.967)PS(0.033)RR;KFELLPTPPLS(0.998)PS(0.001)RR 130.36 3.1419e-05 537390000.0 955730.0 1161910.0 1140550.0 1131680.0 1171890.0 1370060.0 1256470.0 1133510.0 1587590.0 1226000.0 True False 950584.4558715842 1200583.4719605737 1301129.5261616835 1274950.5719662358 1321123.2451637797 1275350.9769743353 1195689.745918483 1218098.2720471527 1196349.7171160958 1147755.6303685922 0.8282115379963868 1.0460270811958607 1.133629399616917 1.1108205773356092 1.151049239235282 1.1111694364459506 1.0417633460308073 1.061287124033511 1.042338356233459 1.0 20.13038407859939 4.723073233651781 3.6319711055275414 1.0851330246493127 0.8034656379799623 0.7428631940322158 0.044362503380152324 0.12726189330383345 3.1001993624692132 0.011149293997977053 0.09501102579028474 52853.43692755742 -4.723073233651781 -0.28166738666935043 KFESEILEAISQNSVVIIR ddPTM_BT-474_Trastuzumab_2h_R1 5 KFESEILEAISQNSVVIIR 19 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;; 280.32 1.998e-39 2851172000.0 3253109.0 3427639.0 3244319.0 3475417.0 3513878.0 3770443.0 3902223.0 3645572.0 4712500.0 4058183.0 False True 3235594.622598385 3541725.892063472 3701090.915073733 3915404.4358574646 3961349.534913352 3509801.1500781295 3713457.56555052 3917623.0944795175 3551167.5192647944 3799186.286554736 0.8516546382705966 0.9322327532602408 0.9741798995673991 1.0305902739526154 1.04268367911637 0.9238297059818477 0.9774349782984824 1.0311742565359134 0.9347179241597927 1.0 21.857259023127487 4.576773934807939 1.8917835768255273 0.993627298301952 0.8330274143465971 0.5686291528030416 0.03742968562373146 0.4081098708031692 1.970043196615542 0.009904840882683445 0.10285547284467635 37737.57027775761 -4.576773934807939 -0.16059988395535485 KFGDPVVQSDMK ddPTM_BT-474_Trastuzumab_2h_R1 4 KFGDPVVQSDMK 12 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ;;; 142.1 9.7939e-05 6233430000.0 9373870.0 8245180.0 7899330.0 6735430.0 6132520.0 8070920.0 8274760.0 7884550.0 14757750.0 9331920.0 False True 9323402.125454873 8519615.831983436 9011487.001792796 7588134.747400798 6913460.071706191 7512996.297302087 7874478.246147091 8472935.157933656 11120900.25621858 8736348.87614133 1.0671966353034235 0.9751918052689282 1.0314934911084948 0.868570481213695 0.7913443212629264 0.8599698116246047 0.9013465874344855 0.9698485349037459 1.2729459885226628 1.0 23.058599039115485 1.4031506737347248 6.904899866468045 1.1361228855555494 0.9253901887437064 0.40979022958555444 0.09862798022945131 0.2088265510153819 14.837429027309991 0.06757206087385191 0.025055555787449564 25.30175661044516 -1.4031506737347248 -0.21073269681184303 KFGEEIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFGEEIAR 8 1 Q8WUM4;Q8WUM4-2;F8WDK9 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ; 99.802 0.01051 962400000.0 1172880.0 1245570.0 1155980.0 1125470.0 1186100.0 1385600.0 1345270.0 1152410.0 1555530.0 1354800.0 False True 1166565.3443992191 1287028.0444870358 1318731.936041718 1267954.386602961 1337142.8044345102 1289816.7333515605 1280194.1506695405 1238408.6860194076 1172190.4745341039 1268335.5040973634 0.9197608524169075 1.014737851561583 1.0397343067205393 0.9996995136593029 1.0542500782441746 1.016936551239638 1.0093497710454904 0.9764046516231099 0.9241959014372281 1.0 20.274504991515403 4.742616330093479 24.441009432431734 1.005046548363082 0.9197608061995016 0.3604853623341008 0.0335995290265491 342.90236318408853 2066326.105815194 0.008425660847737744 0.06398025666722235 55286.14775543056 -4.742616330093479 -0.08528574216358031 KFGFEIIETK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFGFEIIETK 10 1 E7EQ69;Q9GZZ1;A0A087WWJ2;C9J5D1;Q9GZZ1-2;B0AZT5 E7EQ69 NAA50 N-alpha-acetyltransferase 50 0 ; 125.31 0.00066144 755690000.0 1215870.0 1134410.0 1116610.0 1004980.0 1078780.0 1376740.0 1323110.0 1237840.0 1778770.0 1405230.0 False True 1209323.8910158575 1172168.1510846745 1273818.982251894 1132210.3649570795 1216156.238569988 1281569.2042973635 1259106.1145289612 1330213.9064241585 1340415.9677968472 1315547.0183220708 0.9192555447834188 0.8910119781045375 0.9682808478229844 0.8606384638393008 0.9244490859179993 0.9741721021358517 0.9570970075512027 1.0111488893196647 1.0189038849455154 1.0 20.327231381406747 2.3160302266154837 1.188035290509713 1.010935062127749 0.9109085815410457 0.6759724333328176 0.02843701220119276 0.2696761469947147 0.746339724510673 0.017342254591275655 0.01059872178903848 207.02854343061426 -2.3160302266154837 -0.10002648058670338 KFGGPGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFGGPGAR 8 1 P62249;M0R210 P62249 RPS16 40S ribosomal protein S16 0 ; 125.96 0.0019875 4750700000.0 3910000.0 4571100.0 4561100.0 4190600.0 4241100.0 4668500.0 4789900.0 4360500.0 5836700.0 5036000.0 False True 3888948.994441839 4723246.300211694 5203263.234208097 4721129.530328097 4781178.946030854 4345777.58346692 4558194.237805076 4685902.652170343 4398323.492773009 4714598.168463483 0.8248739034549092 1.0018343306129585 1.103649356378525 1.0013853485771709 1.014122259244221 0.9217705153614896 0.9668256073858824 0.9939134757050796 0.9329158786413498 1.0 22.168703382627626 2.7824301043014303 24.994067276930647 0.9656276089951759 0.9969146995885726 0.028723959809578203 0.06804932384039103 1722.9864982678191 981646.9031109102 0.02121420754560791 0.022500910813824448 605.9406721064884 -2.7824301043014303 0.03128709059339674 KFGNPGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFGNPGEK 8 1 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRX8;J3QR02;J3KTQ4;X6RLV5;J3QKN9 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 100.02 0.010266 1275590000.0 2430380.0 2552550.0 2330540.0 2144650.0 2542040.0 3223200.0 3261800.0 2796230.0 4248900.0 3409300.0 False True 2417295.104120605 2637510.0837009395 2658659.774583181 2416162.4701040844 2865753.7261484703 3000387.770596675 3104014.2727139574 3004898.881568233 3201815.5273430645 3191715.5551514216 0.7573654551449913 0.8263612587418714 0.8329876922434739 0.7570105883039621 0.8978725317558923 0.9400548760537436 0.9725222122955429 0.9414682573195888 1.0031644336774752 1.0 21.605900654011684 2.967593517199912 2.4732394427838846 0.9671694299701281 0.7984920415366792 0.8735755798062864 0.03168853810920411 0.09699833904518024 1.1849945918730282 0.010025419950205524 0.011450442947026731 928.097317023571 -2.967593517199912 -0.16867738843344893 KFGNPGER ddPTM_BT-474_Trastuzumab_2h_R1 6 KFGNPGER 8 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;;; 128.36 0.0018228 3677290000.0 2903270.0 3793870.0 3203910.0 3346490.0 3932760.0 4473550.0 5254750.0 4596390.0 6805170.0 5562390.0 False True 2887639.1169036203 3920146.6695071515 3654992.679115052 3770155.290876653 4433573.674705227 4164304.0181039753 5000557.667405625 4939395.961795494 5128127.038106139 5207393.507998329 0.5545267728410256 0.7528040013657461 0.7018852471012884 0.7240004591713416 0.8513997776229992 0.7996906728304259 0.9602803513360354 0.9485351844850591 0.9847780910410477 1.0 22.312130000555314 3.203440522367866 0.4195530145206946 1.0230591837924685 0.5616804914043134 0.8774026940707519 0.0488568227806158 0.5236231622517948 0.1656000657125528 0.0441027516805976 0.10567347615625683 1597.4987329363755 -3.203440522367866 -0.4613786923881551 KFGQGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFGQGSR 7 1 A0A2R8Y851;P62273;P62273-2;A0A2R8Y6P7 A0A2R8Y851 RPS29 40S ribosomal protein S29 0 ; 128.61 0.005998699999999999 5059700000.0 3366550.0 3710510.0 3813410.0 3373720.0 3055150.0 3260680.0 3759090.0 3131090.0 5022300.0 3628280.0 False True 3348424.8688588645 3834012.082299339 4350304.981246085 3800832.6060846928 3444205.2432072298 3035276.866415104 3577248.4555816804 3364747.8351528575 3784621.4603721146 3396720.064073211 0.9857818147202767 1.1287394927981627 1.2807369754307552 1.11897140017093 1.0139797152071097 0.8935905253185101 1.0531478567862866 0.9905873229712037 1.1141988120839572 1.0 21.69571089474919 3.264025905778999 4.9980909398519575 1.0061397043834859 1.141297517179029 0.3169531694925537 0.08412413266422478 0.21015360499703892 13.292874814552784 0.02432287223449774 0.03206383276027833 1836.6478966064371 -3.264025905778999 0.13515781279554306 KFGVVLDEIKPSSAPELQAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 KFGVVLDEIKPSSAPELQAVR 21 2 O14579;M0QXB4;O14579-3;O14579-2;M0R061 O14579 COPE Coatomer subunit epsilon 0 134.29 4.7749e-06 463900000.0 200850.0 241910.0 230570.0 222640.0 239560.0 263780.0 277410.0 262950.0 397910.0 277130.0 False True 199768.64591653296 249961.82811231707 263032.25184963306 250826.2011722066 270066.5460166356 245545.50947132986 263990.6184908886 282572.66423304484 299850.4122208288 259443.3261370701 0.7699895344811853 0.9634544539421156 1.013833178004613 0.9667860989405028 1.0409462060086023 0.9464321673921274 1.0175271124585261 1.089149867296085 1.1557453286056418 1.0 17.985059899221586 5.60330365041191 0.8141930867675989 1.0411417371104852 1.634500191216899e-37 0.6621316527664918 0.0558927212055123 5.592823465028921 1.011736396396582 0.019874757807883878 7.313796165321646 401147.09398998023 -5.60330365041191 -1.0411417371104852 KFGYVDFESAEDLEK ddPTM_BT-474_Trastuzumab_2h_R1 7 KFGYVDFESAEDLEK 15 1 P19338 P19338 NCL Nucleolin 0 ;;;;;; 278.3 2.0908e-33 11842382000.0 8123170.0 7129020.0 6692140.0 6559840.0 6288060.0 8919460.0 8409630.0 8089420.0 12886850.0 8799920.0 False True 8079435.755289031 7366305.121116411 7634335.1428763615 7390315.071404449 7088807.1687483955 8302878.724350397 8002824.068993645 8693093.597642427 9711058.492442986 8238301.571609454 0.980716193144968 0.8941533709450395 0.9266879922416945 0.8970678005855834 0.8604694920586051 1.0078386488015303 0.9714167415978915 1.0552045858093204 1.1787694839806417 1.0 22.973915507851554 1.9946724899973043 1.4295776756045027 1.0901784956635265 0.9153843956615192 0.6004119687160029 0.05572600269469123 0.26171700345288895 0.9960079128340744 0.03697134266582628 0.017462948180995124 98.78078883658463 -1.9946724899973043 -0.17479410000200735 KFHTVSGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFHTVSGSK 9 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 ; 150.08 5.5896e-05 6151900000.0 13274000.0 13430900.0 13979400.0 12085000.0 12834900.0 14582800.0 15459200.0 13365900.0 21027000.0 16679200.0 False True 13202534.258880055 13877939.387349492 15947578.008876953 13614959.760897037 14469348.436587546 13574725.360218778 14711379.436121037 14363331.328664986 15845177.597364629 15614719.176218456 0.8455185206908998 0.8887729091206382 1.0213169912889275 0.8719311315974805 0.9266480090544739 0.8693544345577069 0.9421481917219988 0.9198584468006726 1.0147590500056618 1.0 23.896403287574497 1.2751148233295244 4.753488010570759 1.00864459003988 0.9125294143588769 0.40749196474241745 0.04654969372730067 0.18322567815353408 8.777936807849471 0.03558210506894653 0.011411941205123849 18.841471742312343 -1.2751148233295244 -0.09611517568100303 KFIEDR ddPTM_BT-474_Trastuzumab_2h_R1 5 KFIEDR 6 1 P40227;P40227-2;Q92526-3;Q92526;Q92526-2;J3KRI6 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 ;;;; 110.61 0.045786 6951970000.0 10600100.0 12261300.0 10919400.0 10548500.0 10437300.0 12320100.0 12288300.0 11129200.0 15057900.0 12679400.0 False True 10543030.239381813 12669409.958387643 12456756.606873775 11883939.018437926 11766428.288276128 11468440.485395893 11693867.983135372 11959717.416932525 11347082.310522504 11870189.83661953 0.8881939029194436 1.0673300202244886 1.0494151128438305 1.0011582950237223 0.9912586445733751 0.9661547661197263 0.9851458269908874 1.0075422197576658 0.9559309890324382 1.0 23.50083967199334 3.278457667947833 3.8209849847696216 0.9852543196448578 1.0103826314517987 0.020790611627967692 0.04656832919587242 0.7227353554641276 22.114847950887267 0.013131653464950373 0.01752664793704473 1898.7057602455588 -3.278457667947833 0.025128311806940973 KFIQTFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFIQTFGK 8 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 128.36 0.0018228 1240630000.0 853530.0 950240.0 978640.0 796880.0 743120.0 938270.0 887430.0 820980.0 1320720.0 980810.0 False True 848934.6893160985 981868.1639677905 1116424.0055086317 897764.9262940523 837751.9271826772 873409.6033500072 844501.6205881878 882245.696451969 995246.2527413047 918213.8660863122 0.9245500647191256 1.0693240433765077 1.2158648945992803 0.9777296547704958 0.9123712439166416 0.9512049813326459 0.9197221385772502 0.9608281131849492 1.083893730535051 1.0 19.80847069300736 3.509619876400999 24.947517687218035 0.962792476034872 1.074344653377158 0.23677198701991375 0.07942103061838912 799.2073884849319 613508.1431470158 0.02114910335675246 0.03273411133898552 3233.1055001726654 -3.509619876400999 0.11155217734228595 KFLDAGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFLDAGHK 8 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 91.584 0.0080389 4258600000.0 15933000.0 18900500.0 17759100.0 15863400.0 15453400.0 20808600.0 21583300.0 19393000.0 29220000.0 20373400.0 False True 15847218.4983227 19529591.716906488 20259426.915135633 17871704.813488975 17421298.89052209 19370150.4601756 20539233.32278718 20840204.13565866 22019122.527939994 19073152.169454735 0.8308652055794793 1.023930997005452 1.06219605103244 0.9370084532807402 0.9133937975088325 1.0155715367906781 1.0768662222325445 1.0926460372414908 1.154456396735678 1.0 24.18503995796358 2.3659601267316486 3.0494927746735434 1.0901346788302584 0.9624364550756387 0.4302073067382176 0.06833906954630509 0.24791674668179609 4.647071051784012 0.02606503120828735 0.02090534401410437 232.25235519802848 -2.3659601267316486 -0.1276982237546197 KFLDGIYVSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFLDGIYVSEK 11 1 A0A2R8Y5Y7;P32969;D6RAN4;H0Y9R4;H0Y9V9 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 ; 202.32 6.4819e-08 4465500000.0 8393300.0 9158000.0 9235400.0 7629500.0 7485100.0 10062800.0 9902000.0 9553600.0 14800800.0 11413200.0 False True 8348111.405383289 9462818.49387209 10535664.044464163 8595393.917729747 8438283.117336435 9367182.321283262 9423002.430686636 10266538.144197833 11153341.160559012 10684799.804667871 0.7813072362606408 0.8856336727748577 0.9860422503996233 0.8044506284502096 0.7897464876833724 0.8766829975785806 0.8819072516988111 0.9608545159369938 1.0438512058678393 1.0 23.349056541463487 1.6322170301240377 2.128425378334659 1.0223274638906674 0.85711860642745 0.5882957936179347 0.056755257234932 0.21143555404581654 2.071496332619433 0.04382761620210865 0.016618539560478877 42.8762732609959 -1.6322170301240377 -0.16520885746321745 KFLPLFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFLPLFDR 8 1 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 10 kDa heat shock protein, mitochondrial 0 ; 149.72 0.0008027999999999999 988050000.0 1373690.0 1617440.0 1723170.0 1169270.0 1160400.0 2637000.0 932820.0 850580.0 2624900.0 1579560.0 False True 1366294.205671307 1671275.5126368739 1965777.3579378577 1317299.462112047 1308170.061770345 2454710.3968302985 887695.9328815496 914054.5987577226 1978028.566857963 1478751.1284706492 0.9239514204694828 1.1301939051538286 1.3293496925144528 0.8908189057305549 0.88464518240015 1.6599888578742819 0.6003011025929836 0.6181260532345657 1.3376345273891188 1.0 20.495947838845037 KFMQDPMEIFVDDETK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFMQDPMEIFVDDETK 16 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ; 149.72 1.2968e-06 237580000.0 573700.0 501110.0 427830.0 400170.0 456620.0 622200.0 593850.0 537960.0 838690.0 568040.0 False True 570611.2629440618 517789.1434226079 488064.74523497606 450831.4809696457 514767.8504012191 579188.7785012559 565123.2067726974 578105.3069055284 632006.0873702267 531787.2008764882 1.0730067628622577 0.973677332905326 0.9177820459585166 0.8477667010913166 0.967995938136123 1.0891363642198246 1.0626867398110842 1.08709894851305 1.1884567479784365 1.0 19.02048952907837 2.7713528117476973 4.774748809436537 1.0890756629849851 0.9474668057817018 0.47611065289523824 0.0677630614880947 0.17430234169993528 10.163565954440267 0.021910128161350725 0.02265047794338474 590.6807419842162 -2.7713528117476973 -0.1416088572032833 KFMTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFMTNR 6 1 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4 E7ETK0 RPS24 40S ribosomal protein S24 0 ; 105.39 0.05294 2299700000.0 1629260.0 2034490.0 2019100.0 1709320.0 1231600.0 1689510.0 1797220.0 1247560.0 2595500.0 1770870.0 False True 1620488.2451878034 2102206.769774823 2303371.72966819 1925719.7367394706 1388436.9597348804 1572718.1503787495 1710281.602552878 1340659.2621813188 1955873.8029181494 1657851.5604819157 0.9774628101907681 1.268030757327718 1.3893715122472303 1.1615754888089553 0.8374917229207661 0.9486483517991086 1.0316252934344263 0.8086726786272751 1.179764129395036 1.0 20.66088340695177 3.381595343570127 6.110475799947627 0.9526374759475251 1.2263305658932995 0.4093640404383835 0.13590459549846987 0.17911916846023157 9.53253878654275 0.037136290117614844 0.05051028293183533 2407.661030951386 -3.381595343570127 0.27369308994577435 KFPGYYVTGDGCQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFPGYYVTGDGCQR 14 1 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ; 174.83 3.9769e-06 1077900000.0 947430.0 1194070.0 1107690.0 1101570.0 1054160.0 1284950.0 1288250.0 1126570.0 1442420.0 1318700.0 False True 942329.1421493685 1233813.8981194429 1263643.1237859211 1241028.6490534826 1188401.0275041596 1196124.4309469443 1225932.4259070929 1210640.3740065482 1086954.9184377554 1234539.4370041299 0.7633042039030594 0.9994122999533755 1.023574529828239 1.005256382951281 0.962627026632754 0.9688831276622416 0.9930281602684774 0.9806413126375471 0.8804537837004872 1.0 20.235541493015496 4.741579714307803 24.854326975200173 0.9806798983354139 0.7633041175573269 0.7521809974042247 0.037189984504366336 126.47363836376039 1041121.8651350164 0.008829982704424406 0.06241999004076888 55154.342832345494 -4.741579714307803 -0.21737578077808706 KFPSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFPSLR 6 1 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ; 106.42 0.051536 877480000.0 1181130.0 1439810.0 1232410.0 1165730.0 1223340.0 1292840.0 1250620.0 1171990.0 1683020.0 1377140.0 False True 1174770.9273158803 1487733.2054664749 1405922.6157002477 1313311.2984750099 1379125.0976957357 1203469.0138180088 1190122.732767654 1259449.845044632 1268262.2723125797 1289249.7461711268 0.9112050871483737 1.153952684407977 1.090496717083421 1.0186632205089372 1.069711358711937 0.9334646117962221 0.9231126368666235 0.9768858584498497 0.983721172782173 1.0 20.298100330821985 2.7430113551981687 24.736848866114926 0.9599131347803078 1.0552888822355788 0.32194517865470174 0.06148120100452169 354.3330694479314 1969359.328170145 0.018443148036327732 0.018959475412765808 553.364577468393 -2.7430113551981687 0.095375747455271 KFPVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFPVFK 6 1 P04080;A0A1W2PS52 P04080 CSTB Cystatin-B 0 104.04 0.054791 627890000.0 591520.0 611100.0 452470.0 470840.0 483760.0 558850.0 487320.0 536540.0 716720.0 590900.0 False True 588335.3220440495 631440.0940822487 516173.8430602578 530448.2957236875 545363.9685298356 520218.0148913965 463746.46985681704 576579.3392949151 540093.9595559606 553188.2561050585 1.0635354520836322 1.141456072347149 0.9330889391878718 0.9588929082813856 0.9858560128692664 0.9403996002268703 0.8383158260119407 1.0422841282903414 0.9763294025052277 1.0 19.077411003595437 4.2354207367389645 24.99999391869343 0.9591277597818587 1.1024957814105585 0.5369352898852712 0.05315636526620522 54.54322452137191 434293.1633852673 0.013230153233431 0.03061344921705717 17195.73472549013 -4.2354207367389645 0.14336802162869977 KFQSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFQSEK 6 1 Q9Y3D6 Q9Y3D6 FIS1 Mitochondrial fission 1 protein 0 91.626 0.076449 676090000.0 649290.0 712410.0 704540.0 629090.0 680640.0 711520.0 788880.0 666200.0 1025000.0 793770.0 False True 645794.2947829006 736122.1361890605 803733.1080285407 708732.7294979498 767315.4695306516 662334.2971379202 750718.8605857476 715915.2268950554 772402.4842963208 743110.9190193132 0.8690415902314532 0.9905952359851261 1.0815789237617863 0.9537374722380174 1.0325719214882232 0.8912993742737703 1.0102379622903062 0.9634029168079672 1.039417487386222 1.0 19.503218042368648 4.7371557583759785 7.5262033794142225 0.993364940808921 0.8677420522778356 0.3691271298703751 0.049654718357482676 0.10112611052118171 57.39151778297821 0.01126144698098858 0.06585655722461085 54595.36305682512 -4.7371557583759785 -0.12562288853108539 KFS(ph)FKKPFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFSFKKPFK 9 3 P49006 P49006 MARCKSL1 MARCKS-related protein 1 KFS(1)FKKPFK 85.845 0.080345 998470000.0 4591500.0 1945800.0 1108900.0 1447100.0 1245100.0 1824000.0 1141600.0 1370400.0 4535000.0 2070100.0 True False 4566779.8741636025 2010564.776739061 1265023.4812684155 1630302.7116254931 1403656.1047141124 1697911.1732341554 1086376.4466644959 1472666.2067501985 3417410.0158866546 1937984.4456982263 2.356458476382797 1.037451451791547 0.652752133318927 0.8412362210874813 0.7242865688782122 0.876122188185274 0.5605702610647584 0.7598957824553743 1.7633836140802532 1.0 20.886125561024492 4.731544790860891 3.807675477786853 0.8560931466341596 2.497514221101597 0.6522051940732192 0.31644990737094897 0.13948185861654347 3.96972156751051 0.07408933810420702 0.6356712148176085 53894.542651890995 -4.731544790860891 1.6414210744674373 KFS(ph)KEEPVSSGPEEAVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFSKEEPVSSGPEEAVGK 18 2 O00567 O00567 NOP56 Nucleolar protein 56 1 KFS(0.994)KEEPVS(0.003)S(0.003)GPEEAVGK 104.18 0.00026826 312340000.0 242640.0 178860.0 179650.0 160230.0 157380.0 279540.0 244860.0 227080.0 438170.0 217950.0 True False 241333.6531998385 184813.24697684695 204943.15845420727 180515.10157124785 177421.41013565756 260216.05776637926 233015.18634396343 244025.86268887582 330188.87467718974 204040.2444036173 1.182774770267625 0.9057686022531077 1.0044251762843603 0.8847034176952182 0.8695412547374509 1.2753173204970247 1.142006014671449 1.1959692726409497 1.6182536716827027 1.0 17.638494208375246 2.7306510142806046 24.861318399069816 1.2443095142919027 0.9631409357162015 0.40481743210070587 0.16775994721310916 554.4864745522573 1742848.6928600487 0.05227211125407062 0.05010807346230323 537.8374191760092 -2.7306510142806046 -0.2811685785757012 KFSAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KFSAPR 6 1 P39023;H7C422;H7C3M2;F8WCR1;Q92901 P39023;Q92901 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like 0 92.467 0.074917 199120000.0 259330.0 269900.0 352680.0 176200.0 112660.0 154070.0 218410.0 139300.0 498960.0 190020.0 False True 257933.79609427147 278883.4583420047 402334.2784504865 198506.90193380692 127006.58321186411 143419.50354176902 207844.673892776 149695.27335106747 375997.99372145603 177892.76091569316 1.4499398107408727 1.567705492379046 2.2616675146278746 1.1158795946052196 0.7139502617088225 0.8062132646855614 1.1683706117264525 0.8414916525018743 2.113621666143283 1.0 17.44064827788323 3.6030421630062426 8.684753053076435 1.0596721080218068 1.7391416611101866 0.33426633834215735 0.4176004528194663 0.33225927762582014 21.895607067451138 0.10920241079149826 0.1693151978830436 4009.056372247014 -3.6030421630062426 0.6794695530883799 KFSGFSAKPNNSGEAPSS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFSGFSAKPNNSGEAPSSPTPK 22 2 P49916-3;P49916;P49916-4;P49916-2;K7ERZ5;K7ENR9 P49916-3 LIG3 DNA ligase 3 1 KFSGFSAKPNNSGEAPS(0.118)S(0.881)PT(0.001)PK;KFSGFSAKPNNSGEAPS(0.023)S(0.976)PT(0.001)PK 120.6 1.5108e-05 7295000000.0 2553370.0 1943330.0 1855790.0 1718230.0 1748120.0 2726780.0 2624090.0 2444040.0 4403600.0 2864370.0 True False 2539622.939626074 2008012.5642822098 2117069.1011841567 1935757.7418259077 1970732.7200809869 2538284.116749686 2497152.741702734 2626426.6753836535 3318391.785216856 2681563.454289466 0.9470680007827739 0.7488215731274847 0.789490585351491 0.7218765376330897 0.7349192937905592 0.9465687312710843 0.931230151465651 0.979438570130565 1.2374839685067718 1.0 21.35464296182632 2.021356231015656 1.185118400078803 1.0951849348856502 0.787758727087636 0.6347815219158517 0.09154718635456655 0.297016483828873 0.7729607448935902 0.06711292095436958 0.03170770706284207 105.04036713358589 -2.021356231015656 -0.3074262077980142 KFT(ph)FVCMALSLT(ph)LCFVMFWTPNVSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFTFVCMALSLTLCFVMFWTPNVSEK 26 1 Q9HCJ1-2;Q9HCJ1 Q9HCJ1-2 ANKH Progressive ankylosis protein homolog 2 KFT(0.499)FVCMALS(0.499)LT(0.499)LCFVMFWT(0.502)PNVSEK 64.954 0.012141 355250000.0 590460.0 278040.0 191590.0 158170.0 170430.0 265390.0 268820.0 193930.0 457730.0 281520.0 True False 587281.0289662727 287294.3933212705 218564.2066698671 178194.30578246436 192133.25028224717 247044.21396086205 255816.149607875 208402.04135658627 344928.57476776093 263553.15257860237 2.228321016919429 1.0900814143575364 0.8292983959077563 0.6761228391275628 0.7290113906907076 0.9373601170913078 0.9706434816088194 0.7907400815265613 1.3087628487573832 1.0 18.00773442388355 4.738184463727936 3.1111337860649724 0.8847940780071953 2.4337979965588468 0.8454438799142386 0.16849312740373326 0.12389580135403098 1.833736503916614 0.04075231168307263 0.4704921340683442 54724.835368012995 -4.738184463727936 1.5490039185516515 up KFTDFDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KFTDFDEVR 9 1 P50570-2;P50570-5;P50570;P50570-3;P50570-4;E5RHK8;Q9UQ16-5;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4 P50570-2 DNM2;DNM3 Dynamin-2;Dynamin-3 0 ; 143.24 0.00016422 954620000.0 2033600.0 2320000.0 2302700.0 2056880.0 1764970.0 2315300.0 2374300.0 1933150.0 3065200.0 2304300.0 False True 2022651.3235541985 2397219.797530387 2626900.1445727996 2317280.7971033407 1989728.4677032079 2155248.7606299543 2259446.0382932 2077411.469336795 2309822.531575691 2157237.601189515 0.9376117505271071 1.1112451387870044 1.2177147955905783 1.0741889515673084 0.9223501697754843 0.999078061425193 1.0473793137331402 0.9629961336624656 1.0707316293309739 1.0 21.040753655038888 3.4577916134717412 23.743538415529756 0.9992408823157007 1.100238659908366 0.23613524316532974 0.07417816284162178 167.36727025703019 205584.04473895172 0.020540565383415102 0.027817486689882612 2869.403432365624 -3.4577916134717412 0.10099777759266526 KFVEEQHTK ddPTM_BT-474_Trastuzumab_2h_R1 3 KFVEEQHTK 9 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 ;; 93.058 0.006268500000000001 957820000.0 1782790.0 1849260.0 1840420.0 1669510.0 1665410.0 1866340.0 2057910.0 1621960.0 2505150.0 2012770.0 False True 1773191.6567265883 1910811.5011987227 2099535.138782591 1880869.794821284 1877490.0918415615 1737324.3086917943 1958361.0313203724 1742998.8913459943 1887789.3497901738 1884313.2953809062 0.941028045109741 1.0140625265887433 1.1142176536827857 0.9981725435106448 0.9963789442254265 0.9219933399348017 1.0392969343903598 0.9250048256936245 1.001844732729843 1.0 20.845607423932645 3.2655103053159014 3.2013372968811336 0.973867178035278 1.0256532694433116 0.10558056993589826 0.051596142241776485 0.43740042004853513 9.248061745534674 0.014985599976044 0.02001175971902047 1842.9362192397348 -3.2655103053159014 0.051786091408033585 KFVETPGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFVETPGQK 9 1 P05455;E7ERC4 P05455 SSB Lupus La protein 0 131.82 0.000517 707550000.0 1423800.0 1278900.0 1266200.0 1172600.0 1161200.0 1410400.0 1479500.0 1390300.0 1928900.0 1554700.0 False True 1416134.4189990512 1321467.413388623 1444469.9539923044 1321051.039770612 1309071.937028373 1312902.3677244799 1407930.9327611453 1494051.2458003503 1453548.4409357803 1455477.714954363 0.9729688091057132 0.9079269299771162 0.9924370116773628 0.907640856467551 0.8994104984076787 0.902042232756306 0.9673325247754079 1.0265023163526739 0.9986744736805241 1.0 20.47306131962583 1.9836804149074807 4.8544423071395455 1.0089303969267707 0.9298323661252192 0.5769665405490059 0.02995620415938738 0.1329888826923469 8.446786184385328 0.01302214315601303 0.008307688905658507 96.31200298542966 -1.9836804149074807 -0.07909803080155142 KFVVQLFAEEWGQYVDLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFVVQLFAEEWGQYVDLPK 19 1 Q96CN7;D6RGE2 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 0 124.35 4.7224e-05 37398000.0 81639.0 88769.0 87447.0 91226.0 80230.0 102130.0 97345.0 94305.0 135310.0 112900.0 False True 81199.46469494567 91723.62250300629 99758.7774970501 102775.20224638753 90446.81493953349 95069.99348816034 92636.05045598767 101342.51797108681 101964.66356110759 105694.6253414471 0.7682459200988728 0.8678172821625755 0.9438396434518671 0.9723786986743332 0.8557371261532413 0.8994780309882 0.8764499628692223 0.9588237589536764 0.9647100146455901 1.0 16.68954249079425 4.610688921865061 2.5980701732504636 0.9282441943048164 0.756160460383753 0.5825588927020444 0.04313002404588791 0.2696962041294057 2.785627175425963 0.010907958748399652 0.08822596866807407 40802.701846159136 -4.610688921865061 -0.17208373392106346 KFYEAFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KFYEAFSK 8 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 110.73 0.0054025 609280000.0 1318600.0 1637900.0 1436800.0 1298400.0 1293300.0 1573400.0 1660900.0 1451700.0 2747100.0 1871300.0 False True 1311500.8041102323 1692416.5113685399 1639088.9511105213 1462777.306872048 1457994.0890103297 1464634.5613852092 1580555.9217458523 1560033.2255832325 2070114.0142540734 1751872.0318994669 0.7486281989947849 0.9660617217192158 0.9356213931524093 0.8349795420194202 0.832249195410409 0.836039696231225 0.9022096893870353 0.8904949660574047 1.1816582356244096 1.0 20.74046596430507 1.318004328686396 6.99197827049624 1.0891687048306742 0.8717148045432465 0.6131262521765061 0.07071170060818281 0.12554901319948636 8.85590097691013 0.04627647422262008 0.016665814782839686 20.797174158948653 -1.318004328686396 -0.21745390028742773 KFYEQFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFYEQFSK 8 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 101.66 0.0083926 755100000.0 897510.0 1028670.0 962570.0 862410.0 753340.0 1006060.0 1039090.0 786090.0 1491870.0 986040.0 False True 892677.9058827343 1062908.6591058548 1098091.4891915752 971591.0175751102 849273.3836039914 936513.4402105021 988825.2469907267 844752.0274841393 1124218.6285338087 923110.0830086834 0.9670329923959212 1.1514430171118133 1.1895563805484355 1.0525191257887827 0.9200131157011775 1.014519782037407 1.0711888703109584 0.9151151558553532 1.217859764752709 1.0 19.816143177281575 3.4833511425923582 24.832378579812605 1.0124047200076356 1.1098013153569306 0.11357580764110375 0.09607542138021147 430.41343099963234 1715630.3661103172 0.02543780556736825 0.03565159803714329 3043.3446840019033 -3.4833511425923582 0.09739659534929501 KFYPLEIDYGQDEEAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFYPLEIDYGQDEEAVK 17 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 193.8 1.7676000000000002e-10 414450000.0 859420.0 797550.0 723780.0 721860.0 717340.0 953160.0 999950.0 937160.0 1319870.0 938280.0 False True 854792.9782105373 824095.9696208438 825681.932791463 813247.4019860276 808688.9969927077 887270.2926972964 951578.598320045 1007095.6380020551 994605.7238518888 878398.1670980776 0.973127005756941 0.9381804294325552 0.9399859468277686 0.9258300306713008 0.9206405788212596 1.0101003462114786 1.083311229420856 1.1465138199561018 1.1322948534122295 1.0 19.74451551839596 2.3760357564780987 2.5047871326404882 1.109853765140563 0.9392077270803816 0.7550021290968937 0.04004870707496636 0.11799338573349356 1.5154529804637809 0.01536947946326791 0.012058408783018441 237.70359854879692 -2.3760357564780987 -0.17064603806018153 KFYPLEIDYGQDEEAVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KFYPLEIDYGQDEEAVKK 18 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 247.46 1.2352e-24 1823540000.0 985760.0 769770.0 764080.0 705460.0 708100.0 1038820.0 1048490.0 953090.0 1572450.0 1036740.0 False True 980452.7776882312 795391.3291142078 871655.822497583 794771.1636675573 798272.3377624794 967008.8185192469 997770.5330792393 1024214.4154929562 1184940.7672504876 970574.3656022303 1.010177903348881 0.8195058073892942 0.8980824688860709 0.8188668399194851 0.8224741617476787 0.996326353539359 1.028020694179507 1.0552662957025893 1.2208655093783003 1.0 19.888479231193653 2.357642326250582 1.8136658213048706 1.0896101179196898 0.8698781105425283 0.6094757718609222 0.07630949445400353 0.22491452967405987 1.5070042934008776 0.0347056630906577 0.024746878170771272 227.84648141401192 -2.357642326250582 -0.21973200737716148 KGAANASGSS(ph)PDAPAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGAANASGSSPDAPAK 16 1 O75962-5;O75962;E7EPJ7;O75962-4 O75962-5 TRIO Triple functional domain protein 1 KGAANAS(0.003)GS(0.124)S(0.873)PDAPAK;KGAANAS(0.001)GS(0.15)S(0.848)PDAPAK;KGAANAS(0.004)GS(0.118)S(0.878)PDAPAK 132.14 2.4943e-05 564040000.0 886090.0 740720.0 703850.0 623360.0 661550.0 985430.0 909760.0 844500.0 1240040.0 953220.0 True False 881319.3898938531 765374.4174253038 802945.962026128 702277.3120854587 745794.4711859454 917309.5435527044 865751.433179303 907520.8782841101 934448.7576846926 892384.6835073002 0.9876003098014214 0.8576731891197263 0.8997755977504509 0.7869670166517527 0.8357320390739813 1.0279306228648424 0.9701549669999694 1.0169615134106973 1.0471367056772756 1.0 19.76730622645713 2.734624868691301 24.98231357930173 1.0102326521603653 0.8693144573050474 0.6457276115221637 0.051376220068089395 217.07959565924506 1377917.594240506 0.016618507206057512 0.016222338709572025 542.7812897994925 -2.734624868691301 -0.14091819485531787 KGAAPT(ph)PPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGAAPTPPGK 10 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 KGAAPT(1)PPGK 61.375 0.053911 400150000.0 857500.0 700870.0 599600.0 560550.0 633130.0 945610.0 815420.0 805370.0 1286100.0 1012500.0 True False 852883.3152772074 724198.0342651381 684018.468183372 631515.5725255139 713755.3526444824 880242.2064265078 775975.0193931012 865470.7989859944 969157.8878570723 947881.3831551385 0.8997785276025588 0.7640175734378882 0.721628761086681 0.6662390292163325 0.7530007080302188 0.9286417288801628 0.8186414810787548 0.913058125590746 1.022446378924663 1.0 19.85434700756796 1.8332263780977711 0.8865528753979025 1.0137843745403925 0.7605065879105649 0.6193531700349256 0.07112340344255015 0.39038314150990666 0.5716144092775073 0.0648463718603718 0.028948320214243862 68.11243055131645 -1.8332263780977711 -0.2532777866298276 KGADSLEDFLYHEGYACTSIHGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KGADSLEDFLYHEGYACTSIHGDR 24 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;; 232.32 1.881e-34 2137590000.0 671600.0 925270.0 935250.0 988380.0 977710.0 1054830.0 1107590.0 914220.0 1224130.0 1124010.0 False True 667984.1802217747 956067.0526124724 1066925.0706612708 1113508.806659114 1102215.5731588101 981912.0849027329 1054011.6402953141 982443.7387150951 922459.5640016163 1052274.7194866233 0.6348001789377458 0.9085717207754568 1.0139225535911334 1.0581921108989154 1.0474599006774121 0.933132828071534 1.0016506343605196 0.9336380704787844 0.8766337791063342 1.0 20.00507997043757 4.71570698136776 2.9190295308289183 0.9819283464870106 0.5847147419841299 0.7955667322983868 0.05284727921707908 0.16684570491494005 2.1066759282004908 0.013979956806308569 0.15178242366555966 51964.527339049826 -4.71570698136776 -0.3972136045028807 KGAEKEEL ddPTM_BT-474_Trastuzumab_2h_R1 1 KGAEKEEL 8 2 P30040;F8VY02 P30040 ERP29 Endoplasmic reticulum resident protein 29 0 83.647 0.071564 4225500000.0 2419000.0 2771300.0 2192500.0 2063500.0 2331900.0 2742500.0 3103400.0 2845900.0 4576700.0 2802000.0 False True 2405976.372776168 2863541.045213772 2501184.9424483706 2324738.888424581 2628853.6427458343 2552917.4301505876 2953276.6858607214 3058275.5091873845 3448833.6096380246 2623173.9610871077 0.9172004634336459 1.091632155431678 0.9534956428935495 0.8862313071532443 1.00216519443353 0.9732169760836585 1.1258409581943285 1.1658683543503765 1.3147559638815352 1.0 21.322882055339427 2.149192014080549 2.893886071272045 1.1749034922597559 0.9711854573830279 0.5065242934783698 0.08745071674607151 0.20082887704882388 3.3761492859136997 0.036696919430188005 0.024763188900035725 140.99120232927893 -2.149192014080549 -0.20371803487672802 KGAGDGS(ph)DEEVDGK ddPTM_BT-474_Trastuzumab_2h_R1 17 KGAGDGSDEEVDGK 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK 216.71 6.3839999999999995e-12 48078371700.0 43265879.0 23878701.1 21038424.3 17917643.0 18884531.3 33022220.0 33186189.0 30661265.0 49515351.0 30036881.0 True False 43032940.31475502 24673489.231133886 24000451.57217785 20186014.766662654 21289364.42366857 30739471.657344535 31580846.25451682 32949364.289048947 37312956.21776038 28119901.53871238 1.5303375175589438 0.8774386779827855 0.8535041112834864 0.7178551012660117 0.7570924241807789 1.0931571582861277 1.1230781235503189 1.1717453648864273 1.326923430595659 1.0 24.74508820706224 2.5291325201676074 6.819112837939607 1.161474353616183 0.9246364028158449 0.1612201538092729 0.2236247923365418 0.3983268080970634 43.10952861075896 0.0743672179991562 0.06927217875993931 338.1680086995169 -2.5291325201676074 -0.23683795080033798 KGAGDGS(ph)DEEVDGKADGAEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGAGDGSDEEVDGKADGAEAK 21 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 KGAGDGS(1)DEEVDGKADGAEAK;KGAGDGS(1)DEEVDGKADGAEAK;KGAGDGS(1)DEEVDGKADGAEAK 219.43 2.64e-25 1877330000.0 2590890.0 1221770.0 1173970.0 1077370.0 1002610.0 2085600.0 2026350.0 1795700.0 3583930.0 1861210.0 True False 2576940.9361149427 1262435.8758744379 1339254.7716698358 1213764.9315347665 1130286.4405649472 1941427.3809743186 1928327.7090912801 1929704.2523798393 2700718.473701576 1742425.9843379522 1.4789385370042394 0.7245276914038388 0.7686150136120105 0.6965948295335744 0.6486854826114223 1.114209383024082 1.106691317980983 1.1074813333394158 1.5499760092981705 1.0 20.732665943181704 2.577086324546071 5.98975655261901 1.1780835214955154 0.8418662432685112 0.2695654915231761 0.2576616786691754 0.3100232923952177 15.445215804456604 0.08360291166607302 0.07836964070820948 377.6472482629759 -2.577086324546071 -0.3362172782270042 KGAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_BT-474_Trastuzumab_2h_R1 13 KGAGDGSDEEVDGKADGAEAKPAE 24 3 P35579;P35579-2 P35579 MYH9 Myosin-9 1 KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE 186.33 1.1881e-16 105102420000.0 22184540.0 12232670.0 10584330.0 9245610.0 9990250.0 18221860.0 19089490.0 15982890.0 35914080.0 17117590.0 True False 22065100.901574127 12639827.026144827 12074511.663354404 10416103.278026257 11262449.12064906 16962225.707844585 18166058.43976653 17175614.411270935 27063536.208016403 16025130.751093911 1.3769061385079753 0.7887503211343223 0.7534735192429036 0.6499855408240729 0.7027992030505125 1.0584765872619608 1.1335981416892011 1.0717924663484253 1.6888184332704421 1.0 23.93383279223716 2.142259524330438 1.472066385850002 1.2734864910510186 0.8411898170995175 0.3130223655477531 0.2560229558527072 0.48474109528978093 2.0125464980345606 0.15779525599112265 0.08535428007996257 138.75847697113764 -2.142259524330438 -0.4322966739515012 KGAVAEDGDELR ddPTM_BT-474_Trastuzumab_2h_R1 6 KGAVAEDGDELR 12 1 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9;G3V2D9 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;;;;; 172.57 5.6755e-05 16936900000.0 21102100.0 21656200.0 19982700.0 18867000.0 19416300.0 22623800.0 21623800.0 21284900.0 26803200.0 21963500.0 False True 20988488.638263736 22377013.525550675 22796090.46725797 21255560.265522897 21888850.71557354 21059869.95669678 20577774.183062166 22873287.32053218 20197910.5044792 20561770.62610162 1.0207529798829886 1.0882824214148532 1.1086637859056772 1.033741726431894 1.064541138679336 1.0242245349222434 1.0007783160921089 1.1124181733403962 0.9823040472418981 1.0 24.293461168213504 3.6971513839482824 24.981441692359486 1.039423163316809 1.0741380355395733 0.15665546824337306 0.040956954511635696 968.6667234397202 584378.8238052395 0.010797703826720748 0.016727867986482094 4979.106136380248 -3.6971513839482824 0.03471487222276437 KGAVAEDGDELRTEPEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 KGAVAEDGDELRTEPEAK 18 2 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;;; 251.7 1.0279e-30 5490800000.0 5580770.0 5363500.0 4954920.0 4973660.0 4840930.0 6559430.0 6819830.0 6037220.0 10678400.0 6865510.0 False True 5550723.754401832 5542020.855195783 5652529.667063303 5603324.846039146 5457393.741059903 6105992.0433373405 6489928.768619425 6487748.012781989 8046851.403229112 6427347.273941175 0.8636103695386903 0.8622563273755519 0.8794498610617686 0.8717943199921812 0.8490896023599317 0.9500018877295262 1.0097367532842014 1.0093974599887734 1.2519708458657588 1.0 22.615791993598123 2.0770698754323784 1.2207568164545881 1.105330441290323 0.8653365042395501 0.6973897987538273 0.06438701277885214 0.2504536124649217 0.6975343079461801 0.043670663878204515 0.021592017442332162 119.41802255954974 -2.0770698754323784 -0.239993937050773 KGAVECCPNCR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGAVECCPNCR 11 1 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 ; 187.58 5.6563e-06 324790000.0 338280.0 411400.0 413420.0 421330.0 411510.0 433070.0 422650.0 411330.0 587610.0 465110.0 False True 336458.7380664409 425093.2003034484 471625.9424889418 474670.3348000615 463913.3592891366 403132.89023712534 402204.80482020805 442025.5332914179 442801.389070597 435426.28159929515 0.7727111391408156 0.9762690454561127 1.0831361413387528 1.09012789273221 1.0654234227323396 0.9258349972731134 0.9237035563010424 1.0151558414615767 1.016937671847031 1.0 18.732068963241442 4.718851160257108 3.88626926577283 1.0130095642573285 0.7540448753353323 0.6383319278825834 0.05434774645251552 0.15741116719232903 4.763609786413783 0.014710365431638357 0.11198748112314796 52342.10209938915 -4.718851160257108 -0.2589646889219962 KGDDS(ph)DEEDLCISNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGDDSDEEDLCISNK 15 1 H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8 H3BRG5;Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 1 KGDDS(1)DEEDLCISNK 149.85 2.0114e-06 109880000.0 166340.0 104330.0 92888.0 94474.0 90047.0 166470.0 132320.0 144670.0 250030.0 166010.0 True False 165444.44392211118 107802.56098118331 105965.82300303035 106434.39871336245 101513.95169961589 154962.3207282292 125919.17608851286 155466.01001937498 188413.45673035062 155415.09967168857 1.0645326243821187 0.6936427747941748 0.6818245024253186 0.6848394971801522 0.6531794652775835 0.997086647665408 0.8102119829702179 1.0003275765855053 1.2123240092395813 1.0 17.245767152977702 1.859999360032724 1.2319776567946212 1.1030764568671103 0.7601867508864992 0.4489678872270073 0.13995887752805072 0.39603705694061836 1.114296051550743 0.10944908507837853 0.046085180857654374 72.44348925620795 -1.859999360032724 -0.3428897059806111 KGDECELLGHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGDECELLGHSK 12 1 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 ; 145.0 4.1237e-05 1115230000.0 2060230.0 1901750.0 1877770.0 1425960.0 2010860.0 3792500.0 1995130.0 1839660.0 3372800.0 2584400.0 False True 2049137.950593071 1965048.59911785 2142143.694130572 1606486.3897930256 2266931.101698996 3530333.401584721 1898617.9397632594 1976944.7708041945 2541618.6332045197 2419461.379383845 0.8469397230531192 0.812184321627106 0.8853804042435692 0.6639851346592452 0.9369569281061667 1.4591402167716263 0.7847275248703385 0.8171011894009466 1.050489441518502 1.0 21.206254479724628 3.0132849157421 24.773447661986665 0.997515819926694 0.8077484130042933 0.24531883855775394 0.17944024054026958 365.86317902546864 682248.8286043396 0.05534465942547644 0.06611589504642791 1031.0623195593719 -3.0132849157421 -0.18976740692240068 KGDEVDGVDEVAK ddPTM_BT-474_Trastuzumab_2h_R1 5 KGDEVDGVDEVAK 13 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;;; 168.93 4.71e-05 5677800000.0 12608610.0 9699990.0 9053270.0 7751430.0 8347230.0 12560370.0 11945160.0 11814610.0 18740270.0 12343230.0 False True 12540726.644708268 10022848.30338222 10327891.723566491 8732760.243227975 9410200.262591586 11692101.185830634 11367326.975857474 12696276.191573955 14121981.56525251 11555474.49382915 1.0852628034794471 0.8673679569570785 0.89376613042431 0.7557249378112029 0.8143499661235735 1.0118235466725702 0.9837178890341414 1.098723916387338 1.222103131532498 1.0 23.462073165543647 2.1429736524957943 1.584180956495242 1.1154336723587577 0.8811244504005585 0.4662019090719596 0.09873485287683981 0.32812046545684204 1.586271354099247 0.0591508569472784 0.03266264063425345 138.9868309000036 -2.1429736524957943 -0.23430922195819914 KGDIFLVR ddPTM_BT-474_Trastuzumab_2h_R1 3 KGDIFLVR 8 1 P55072;C9IZA5;C9JUP7 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;; 123.86 0.0021318 20162250000.0 12802700.0 14334010.0 12617440.0 12216630.0 12206240.0 12675340.0 12093920.0 13619120.0 16120180.0 13872390.0 False True 12733771.685713703 14811108.857757984 14393865.879245497 13763254.105400717 13760632.311947316 11799123.580340898 11508890.886339085 14635447.890890097 12147577.638345245 12987042.193449397 0.9804982147618306 1.140452817288038 1.1083251801942782 1.059768182807848 1.059566305165938 0.9085304724960639 0.8861826053159445 1.1269269532574668 0.9353613746225008 1.0 23.630569557758246 2.9368428973305782 9.872786648687672 0.984186618333518 1.0772371622481012 0.3062445782881562 0.07277645271948173 0.7945128144114212 121.25770953955757 0.023240264738110448 0.02469037893432728 864.6550799088112 -2.9368428973305782 0.09305054391458323 KGDIIQLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGDIIQLQR 9 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 112.89 0.0030283000000000003 1336730000.0 894360.0 1105690.0 1100020.0 929520.0 704300.0 999020.0 1164190.0 885390.0 1664410.0 1073320.0 False True 889544.8651327366 1142492.2232462796 1254893.2544547578 1047197.1366941667 793988.4302868433 929960.0988401248 1107873.6820623155 951462.2977193223 1254238.457451358 1004819.7986845168 0.8852780033766303 1.137012054043919 1.2488739335128851 1.0421740674946185 0.7901799221375929 0.9254993781547733 1.102559566912111 0.9468984378740857 1.248222277360949 1.0 19.93850536540059 4.767906855653496 21.91675418641411 1.039766799893771 0.8852767368721937 0.11151594366497353 0.13643366240857807 4710.5145398116365 3517657.4800268533 0.03393010451823315 2.682718488154212 58601.24673100152 -4.767906855653496 -0.1544900630215773 KGDIVDIK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGDIVDIK 8 1 P46778;M0R181;G3V1B3 P46778 RPL21 60S ribosomal protein L21 0 ;; 95.573 0.015319 5142120000.0 8546600.0 7500600.0 6980400.0 5932570.0 5979400.0 8264400.0 7868200.0 7214000.0 11153900.0 7937700.0 False True 8500586.055216517 7750252.936791559 7963179.645275534 6683632.753719887 6740841.1473195385 7693101.480305015 7487585.106557109 7752345.3119497495 8405170.799602682 7431109.190193128 1.1439188737039128 1.0429469865709424 1.071600408695997 0.8994125348797607 0.9071110348123347 1.0352561486322445 1.007599930901098 1.0432285562672876 1.1310788987860692 1.0 22.82514613725601 4.722828681150395 1.6357306080439167 1.0075264396020132 1.1864400065406622 0.2755873390729163 0.06527629418624915 1.3910694596293494 3.6700010914586283 0.01845785746344839 0.39118713009333145 52823.68337955669 -4.722828681150395 0.17891356693864902 KGDLLLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGDLLLNR 8 1 Q15008;Q15008-4;Q15008-3;Q15008-2 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 86.624 0.025496 1128700000.0 851710.0 1025830.0 1010810.0 840210.0 601220.0 793810.0 891250.0 616790.0 1261330.0 828460.0 False True 847124.4879938775 1059974.131422671 1153123.2618819776 946580.499851327 677781.8032898704 738935.7831277442 848136.8325943693 662818.001796158 950492.122456077 775586.9735197093 1.0922366116459152 1.3666734584419047 1.4867749217717803 1.2204698275882948 0.8738952901877826 0.9527439324752485 1.0935418741568335 0.8546017718531401 1.2255132627390923 1.0 19.564929047097174 3.404664811449958 5.52415981813027 0.9891897008449372 1.3257852315135565 0.5340991956878134 0.13502722795852445 0.13926334463037218 7.618777247616395 0.03675402498440266 0.05031319779620209 2539.0123390149 -3.404664811449958 0.33659553066861936 KGDMDELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGDMDELEK 9 1 G8JLG1;Q14683 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 73.632 0.06954400000000001 339610000.0 394900.0 375330.0 345060.0 351710.0 315160.0 459160.0 449180.0 393770.0 679400.0 437260.0 False True 392773.90227751504 387822.63215822336 393641.44868471357 396236.4499383616 355293.7579003293 427419.3499463792 427451.44736576633 423155.1169235448 511970.9734935818 409353.6924428799 0.959497641107321 0.9474023059223756 0.9616169487457139 0.9679562130581034 0.8679383243865719 1.0441321474241254 1.04421055741524 1.0337151581516288 1.2506812151572833 1.0 18.642988383193757 2.187805503447193 1.3767796701263457 1.1014154003343435 0.9456664534365347 0.47568550653381547 0.0693138032514271 0.371761036063256 1.358688366894888 0.04166082259574783 0.02314787514709469 154.10101649037318 -2.187805503447193 -0.15574894689780883 KGDNVPQVNGENTER ddPTM_BT-474_Trastuzumab_2h_R1 1 KGDNVPQVNGENTER 15 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 89.484 0.010233 94473000.0 96592.0 99777.0 89964.0 93090.0 102630.0 117820.0 101800.0 102300.0 131960.0 118220.0 False True 96071.95940438005 103098.01712852981 102630.14921889406 104875.18445526736 115699.32216433159 109675.38071844749 96875.54508623487 109934.1454688744 99440.22617340738 110675.09838676585 0.8680539778572991 0.931537614434666 0.9273102144462717 0.9475951319127806 1.045396153703953 0.9909670948308106 0.8753147410602972 0.9933051523902684 0.8984878045999379 1.0 16.755971130384776 4.766386689645341 1.167479608352356 0.9631341841965037 0.8231495954834134 0.26885546680400474 0.04754183869791517 2.3403426249188675 2.5641019607900475 0.01377515762486526 0.40644104318682434 58396.48268597135 -4.766386689645341 -0.13998458871309027 KGDRS(ph)PEPGQTWTR ddPTM_BT-474_Trastuzumab_2h_R1 8 KGDRSPEPGQTWTR 14 2 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 KGDRS(0.987)PEPGQT(0.002)WT(0.011)R;KGDRS(0.985)PEPGQT(0.002)WT(0.013)R;KGDRS(0.953)PEPGQT(0.045)WT(0.002)R;KGDRS(0.99)PEPGQT(0.01)WTR;KGDRS(0.996)PEPGQT(0.004)WTR;KGDRS(1)PEPGQTWTR;KGDRS(1)PEPGQTWTR;KGDRS(0.979)PEPGQT(0.012)WT(0.009)R 227.64 1.0204e-12 42601180000.0 6155040.0 6045900.0 5634350.0 5247330.0 5274470.0 7201470.0 6451660.0 5569700.0 7524250.0 6510710.0 True False 6121901.948529228 6247134.126676276 6427617.505351864 5911641.439979134 5946142.490267007 6703649.329336937 6139568.558065409 5985339.29636353 5669999.407284491 6095190.913700739 1.0043823130738117 1.0249283763424046 1.0545391598651812 0.9698861813648817 0.9755465537430991 1.0998259815403826 1.0072807636369385 0.9819773295221508 0.9302414784973339 1.0 22.53923997900243 1.667291418786024 3.4284188593901845 0.9635786858463843 1.020790065045075 0.2564875620828029 0.038651505073671655 0.258701501254112 7.13732746791129 0.0230900363498658 0.01036141233290235 46.48270772617862 -1.667291418786024 0.05721137919869068 KGDSNANSDVCAAALR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGDSNANSDVCAAALR 16 1 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 0 ;;; 217.88 2.2214e-14 1165600000.0 400215.0 412815.0 397379.0 398849.0 373852.0 440277.0 427929.0 420480.0 528465.0 465986.0 False True 398060.286908067 426555.29772306245 453326.5091198133 449343.24250509066 421459.8362055897 409841.6872905778 407228.4394224694 451858.35275417706 398231.8818182009 436246.3745293141 0.9124666934769422 0.9777853126763338 1.0391524963592595 1.0300217233665434 0.9661050745930478 0.939472993289112 0.9334826905136955 1.0357870669795421 0.9128600375140568 1.0 18.734783616142337 KGDSS(ph)AEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGDSSAEELK 10 1 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 KGDS(0.202)S(0.798)AEELK 120.53 0.0013475 0.0 465770.0 320770.0 336230.0 272430.0 295020.0 404350.0 416200.0 378470.0 650400.0 443360.0 True False 463262.34607191215 331446.63554044033 383568.2614364494 306919.61006712273 332589.04827946116 376398.2362375167 396066.8159616007 406713.35323171876 490117.63491349074 415064.3852204072 1.1161216489964825 0.7985427016688886 0.9241174986207676 0.7394506033181876 0.801295076432178 0.9068430095192146 0.9542298256962749 0.9798801528484457 1.1808231502522886 1.0 18.662975620615303 1.7303731639375535 1.6867606326918885 1.082807595744004 0.8706159171119449 0.3551030156764702 0.10630343252603623 0.3551961103381759 2.0011174206319886 0.07764399090021365 0.03066939316058886 53.74934347956771 -1.7303731639375535 -0.21219167863205912 KGDSSAEELK ddPTM_BT-474_Trastuzumab_2h_R1 4 KGDSSAEELK 10 1 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 0 ;;; 162.93 1.0613e-05 16515400000.0 15348000.0 12307200.0 10905300.0 10272900.0 10727700.0 15122800.0 16100700.0 14924100.0 24186800.0 15939200.0 False True 15265368.073323088 12716837.712140502 12440671.44943316 11573448.086695837 12093809.006940465 14077396.43124205 15321847.630353063 16037812.125044236 18226287.226515383 14921946.609764319 1.0230145216666335 0.8522237778158995 0.8337163893410855 0.77559908163206 0.810471269145727 0.9434021444648764 1.0267995209369711 1.074780157338838 1.2214416592664148 1.0 23.830932415693834 2.2164688194554674 1.8362601420726605 1.1049615335009304 0.8535376726979568 0.6345983811928657 0.08010547650852849 0.21643262303270194 1.454768725334258 0.04170516217334933 0.02595704834098352 164.61477754951986 -2.2164688194554674 -0.25142386080297363 KGDVEGSQS(ph)QDEGEGSGESER ddPTM_BT-474_Trastuzumab_2h_R1 2 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 KGDVEGSQS(1)QDEGEGSGESER;KGDVEGS(0.001)QS(0.999)QDEGEGSGESER 310.16 1.0112999999999994e-66 1460860000.0 1040150.0 878550.0 735660.0 784110.0 855700.0 1056370.0 997020.0 1004210.0 1225500.0 1067560.0 True False 1034549.947971528 907792.0056553094 839234.5335286509 883378.2456033895 964668.3228687391 983345.6283275028 948790.3336137328 1079149.249475057 923491.9458586759 999427.4068158998 1.0351426636052798 0.9083120989722167 0.8397153488139661 0.8838843517587394 0.9652210018355406 0.9839090079192121 0.9493339157433226 1.0797675169957015 0.9240210340047122 1.0 19.930742255383578 3.0283246101983927 3.6924629673765472 0.9953971548609674 0.9109196701857707 0.2277210138506056 0.059885317869198686 0.2974151599673648 8.73697282930701 0.01879335544962355 0.02203201507709414 1067.3936386244793 -3.0283246101983927 -0.08447748467519667 KGDVEGSQSQDEGEGSGESER ddPTM_BT-474_Trastuzumab_2h_R1 4 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ;;; 256.2 3.0972999999999995e-36 1551650000.0 685440.0 697390.0 678570.0 604510.0 632280.0 832460.0 799230.0 750390.0 930470.0 802040.0 False True 681749.6671995433 720602.2045688425 774106.7577638276 681040.9040181938 712797.1101828278 774913.9996000576 760568.1915449064 806387.9122032123 701168.1361592178 750853.1205390091 0.9079667494890892 0.9597112735598001 1.0309696218724183 0.9070228056444651 0.949316305259726 1.0320447214014055 1.012938710301854 1.0739622572579 0.9338286237072247 1.0 19.518171194434085 2.742664665920041 24.656619453729434 1.020146481231463 0.9534813286703172 0.28287160246180965 0.046083487564454066 343.7863854056368 2065426.174996027 0.014263205130809822 0.014648184914833553 552.9230129980223 -2.742664665920041 -0.06666515256114569 KGDVLHMHYTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGDVLHMHYTGK 12 1 A0A494C1N0;P26885 A0A494C1N0 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 0 ; 176.25 1.0369e-05 3471300000.0 3987500.0 5235000.0 4946800.0 4499100.0 4472500.0 5525200.0 5688200.0 1301250.0 6697400.0 3922400.0 False True 3966031.743052899 5409243.810375673 5643266.441643609 5068685.598696884 5042046.364415601 5143255.928921797 5413040.034965827 1398355.8826136144 5046915.510562134 3672069.0738644144 1.0800536872469897 1.4730779028301582 1.536808357394199 1.3803350363893612 1.3730804794228582 1.4006424785220977 1.4741117136092565 0.38080870879207396 1.3744064746720186 1.0 21.808161766306934 1.7716470827172668 24.99999999999808 0.8574110767995908 1.3968569055003244 0.41115955217669264 0.2544301672025614 24.83763696116427 18776.291780225372 0.10963489946794995 0.06082203836594026 59.10811134005822 -1.7716470827172668 0.5394458287007335 KGDVVHCWYTGTLQDGTVFDTNIQTSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGDVVHCWYTGTLQDGTVFDTNIQTSAK 28 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ;; 318.52 3.764999999999998e-83 2660200000.0 1273637.0 1135829.0 1178047.0 1002528.0 1033370.0 1496427.0 1358316.0 1227115.0 1650083.0 1335829.0 False True 1266779.8799063733 1173634.381641871 1343905.777831916 1129447.9420084872 1164963.544236144 1392982.5237002582 1292609.0658089814 1318688.5524637115 1243442.1546293919 1250575.2495592553 1.0129577411297954 0.9384756191644599 1.0746300778826012 0.9031427276419732 0.9315421400245337 1.1138734148074592 1.0336115849602334 1.0544655772841032 0.9942961489663438 1.0 20.25416043923786 2.7543639139027674 24.9936309323782 1.0430734216439674 0.9721385211083643 0.27706456669363366 0.05401749578775689 1038.0828380664207 1641774.085456223 0.016125284938435704 0.01705040745900911 568.0203745890876 -2.7543639139027674 -0.07093490053560314 KGDVVIVLTGWRPGS(ph)GFTNTMR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGDVVIVLTGWRPGSGFTNTMR 22 2 P14618;P14618-3;B4DNK4;P14618-2;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 1 KGDVVIVLTGWRPGS(0.999)GFT(0.001)NTMR 217.01 6.766900000000001e-26 483140000.0 488850.0 407700.0 377930.0 360500.0 438580.0 578440.0 511520.0 424280.0 664000.0 522140.0 True False 486218.0859163406 421270.04804014607 431139.2589735519 406139.2630371027 494430.5633326766 538453.804301297 486775.8234038398 455941.9280501856 500366.09714415384 488816.57817345526 0.9946841159380797 0.8618162043813897 0.8820062130146562 0.8308622930807908 1.011484850166496 1.101545709258306 0.9958251113797304 0.9327464501181378 1.0236275107809463 1.0 18.898933689305096 3.2215655489011183 24.98663815987612 1.0055835913012823 0.8894234953194321 0.5249757014259822 0.05507012835185859 204.80798679207334 301113.976603354 0.0169941311761117 0.020361095140753162 1665.5801980361448 -3.2215655489011183 -0.11616009598185018 KGDVVIVLTGWRPGSGFTNTMR ddPTM_BT-474_Trastuzumab_2h_R1 3 KGDVVIVLTGWRPGSGFTNTMR 22 2 P14618;P14618-3;B4DNK4;P14618-2;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;; 194.62 1.6784e-18 7159600000.0 1959740.0 2051220.0 1925570.0 1767600.0 1868070.0 2304340.0 2304970.0 2171420.0 2701300.0 2374480.0 False True 1949188.9775875818 2119493.6177113266 2196673.51864552 1991377.9787638884 2105957.641581634 2145046.399632891 2193469.7952595204 2333462.3866473394 2035600.8105655138 2222938.653505396 0.8768523479106664 0.953464736585985 0.9881844985607415 0.895831279744785 0.9473755104580631 0.9649597825159615 0.9867432876748957 1.0497196505929915 0.9157251403926665 1.0 21.084036704146676 2.4867921465991154 2.250057333746422 0.9982579578612896 0.9343638270775504 0.27250374643621267 0.042073584467886095 0.3720392486144993 3.8061271832744357 0.016498955975268598 0.013808441900843672 306.75535054665687 -2.4867921465991154 -0.06389413078373918 KGDYIEAESSYSR ddPTM_BT-474_Trastuzumab_2h_R1 5 KGDYIEAESSYSR 13 1 Q99614 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 ;;;; 174.62 3.1535e-05 1661940000.0 808596.0 872240.0 815915.0 795981.0 812322.0 1023470.0 925860.0 910680.0 1148870.0 1015570.0 False True 804242.6089794604 901271.9811197856 930788.7399396858 896752.1129862302 915766.3916902876 952719.9278892326 881072.6146713302 978639.56593934 865746.3825692819 950755.453126778 0.8458984971735094 0.9479535228073058 0.9789991073714833 0.9431995473042564 0.963198673937214 1.0020662250802705 0.9267079266005998 1.0293283753680915 0.9105878695957785 1.0 19.85871478299833 4.739527156639114 2.783669685603291 0.9711274347967296 0.8223076582953146 0.5354447267689284 0.03426444701008567 0.30704058718497684 3.2585563795484007 0.00781285670122914 0.1044912276332537 54894.28801914861 -4.739527156639114 -0.14881977650141498 KGDYQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGDYQK 6 1 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 81.78399999999998 0.097755 737560000.0 700430.0 577270.0 492660.0 475720.0 596500.0 512560.0 699220.0 652710.0 991400.0 838170.0 False True 696658.9627050882 596484.0829829163 562022.2457225148 535946.1032233295 672460.7392675028 477127.9336364583 665396.0573202076 701418.5345942224 747082.754079389 784677.2730065613 0.8878286483763916 0.7601648518472238 0.7162463665719235 0.6830146885353312 0.856990207822522 0.6080562672706192 0.8479869115753575 0.8938942909696803 0.952089196131391 1.0 19.58173988975748 1.6956088243298606 1.9598871618012188 0.9702815636916758 0.75251633177656 0.557911074481173 0.07869603779884209 0.22087259802449566 1.7610949384155923 0.05512003352640692 0.021829292626043113 49.614523454425495 -1.6956088243298606 -0.21776523191511588 KGEDEDKGPPCGPVNCNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGEDEDKGPPCGPVNCNEK 19 2 Q06323;Q06323-3;Q06323-2;H0YLU2 Q06323 PSME1 Proteasome activator complex subunit 1 0 84.946 0.0017522000000000002 890950000.0 54131.0 39919.0 40602.0 41798.0 34538.0 56951.0 47329.0 40198.0 56179.0 51173.0 False True 53839.56471051947 41247.679783454914 46318.40868108951 47089.62251435452 38936.20957723555 53014.11141823379 45039.5154556622 43197.778881308004 42334.43821003224 47907.095328590534 1.1238327922250066 0.8609931263947589 0.9668381763368378 0.9829362893193787 0.8127441104532749 1.106602499162487 0.940142898389897 0.9016989776779046 0.883677833516394 1.0 15.547951723137164 2.004293098906762 24.99919538321953 0.9183826662976524 0.9680040741065543 0.04533829693047764 0.09349738096660247 380.15705438355064 2213683.7752531036 0.03338631212266833 0.024560248796860782 100.99342457797117 -2.004293098906762 0.049621407808901896 KGEDFVK ddPTM_BT-474_Trastuzumab_2h_R1 4 KGEDFVK 7 1 P40926;G3XAL0;P40926-2 P40926 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase 0 ;;; 88.921 0.029267 5762100000.0 9884800.0 8819400.0 9484200.0 6783100.0 9334100.0 16853000.0 9442500.0 8982000.0 14981600.0 10820600.0 False True 9831581.335104523 9112948.397560114 10819492.921855804 7641839.764513088 10522742.30745483 15687991.777694765 8985730.201147093 9652282.449671846 11289585.423154898 10130020.044018272 0.9705391788350927 0.8995982592296317 1.0680623409274161 0.7543755818159075 1.0387681625238696 1.5486634487913427 0.8870397256966064 0.952839422600301 1.1144682215926456 1.0 23.272133692978144 4.236656870129133 24.982956876253304 1.0382372034741982 0.9350687151215447 0.047617320358196324 0.19543418963381104 177.6407698141883 2331332.710482317 0.05017759858311575 0.11785571459597863 17244.74870629774 -4.236656870129133 -0.10316848835265358 KGEDVLGSVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGEDVLGSVR 10 1 P56192;P56192-2;F5H2V6 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ;;; 171.05 6.6365999999999984e-06 2233690000.0 3317590.0 3857100.0 3601020.0 3669510.0 3489520.0 3643050.0 3717000.0 3264550.0 4475570.0 3824430.0 False True 3299728.464058903 3985481.2418338135 4108012.3153730533 4134069.5897566685 3933889.6879945328 3391214.5283172624 3537194.5096810944 3508167.2980490117 3372625.7430654527 3580351.603140747 0.9216213461170472 1.11315359037299 1.1473767860590656 1.1546546395415997 1.0987439570302693 0.9471736031015584 0.9879461298097666 0.9798387663858449 0.9419817148983151 1.0 21.771669841506313 2.745012970344451 24.378921413882786 0.9723520408570177 1.0956575623066531 0.456747036562825 0.06275326576037947 327.07759840338116 1235797.2375311998 0.019685617614904775 0.0204199623123234 555.9208597778464 -2.745012970344451 0.12330552144963547 KGEETEETSSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGEETEETSSSK 12 1 Q9UEE9;Q9UEE9-2 Q9UEE9 CFDP1 Craniofacial development protein 1 0 115.12 0.0015786 156370000.0 279980.0 283170.0 265950.0 246710.0 231150.0 269600.0 284870.0 292430.0 372000.0 294870.0 False True 278472.6187887025 292595.1422701202 303393.4483211606 277943.46070425364 260585.582366611 250963.18657013634 271089.74979092105 314252.61152945174 280325.58454461646 276051.14414909214 1.0087718333755664 1.0599309166858328 1.0990479653918812 1.006854949147175 0.9439757374302772 0.9091184437713974 0.9820272639207338 1.1383854701928982 1.0154842335781653 1.0 18.074576055116747 -0.5885828764497274 4.484254011527199 0.9999999918391013 1.0230200841062655 0.0020570083553020924 0.06471084729602092 2306584.726622313 514374.63031617325 0.23261611896129308 0.017008297764133172 0.2578796805474846 0.5885828764497274 0.023020092267164283 KGEFETGFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGEFETGFEK 10 1 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ;; 152.96 2.743e-05 6169100000.0 7445900.0 6183500.0 5681100.0 5532300.0 5592300.0 7372200.0 7702800.0 7341600.0 10582800.0 7626000.0 False True 7405812.101717258 6389314.059495321 6480949.498993586 6232688.6127605075 6304446.256841008 6862577.166292135 7330186.136446467 7889467.471889425 7974810.742254747 7139302.151052922 1.037329972177327 0.8949493836106949 0.9077847332792547 0.8730109023108505 0.8830619748894102 0.9612392109332457 1.0267370649616494 1.1050754408434538 1.1170294481903391 1.0 22.767351630634725 2.204459798489572 2.356766816472339 1.0831555447856405 0.9153516101318461 0.6280984836452715 0.05243622526581144 0.1711222790653587 1.9262178994110761 0.023621485096673743 0.015783834541554544 160.1252417712945 -2.204459798489572 -0.1678039346537944 KGEIFELK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGEIFELK 8 1 P63010;P63010-2;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7ERB2;K7EN71;A0A087WXS3;K7EKZ5;K7EJX1;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 98.943 0.011488 5369600000.0 5853600.0 4912600.0 4452600.0 4218100.0 4209900.0 5831200.0 6225900.0 5433000.0 8058400.0 5462700.0 False True 5822084.867996104 5076112.921270586 5079487.37730701 4752111.027508466 4746005.810967745 5428102.869168314 5924729.431752361 5838438.048214989 6072515.297027777 5114065.80914724 1.138445433686534 0.9925787251683836 0.9932385633797709 0.9292236754186138 0.9280298666628094 1.0614065347886947 1.1585164628024798 1.1416431203861526 1.187414382929178 1.0 22.286039295003363 2.4613080696661167 4.762488868155567 1.1341125776893133 0.991956730687024 0.4019002490378121 0.0714684234869115 0.16827291699019598 10.086966097266904 0.024715574046446576 0.021250190326769506 289.2731132726655 -2.4613080696661167 -0.14215584700228934 KGEITGEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGEITGEVR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 ;;; 103.08 0.0055798 2631640000.0 6119200.0 6614000.0 5396400.0 5082600.0 4957420.0 6417200.0 5312400.0 5275600.0 7256200.0 6245800.0 False True 6086254.907107039 6834142.991752564 6156166.213650348 5726056.63886928 5588718.052069577 5973594.068463942 5055418.916661241 5669292.06095399 5468006.7380985115 5847187.69670159 1.0408858450944387 1.168791450906855 1.0528422436521157 0.9792838772901646 0.9557959042809904 1.0216183194929176 0.8645898128963797 0.9695758636501525 0.9351515671684397 1.0 22.479311472382935 3.806022804013894 2.633129368063576 0.9547080881885365 1.1061749285863127 0.5934145324964545 0.04908537779907921 0.16929641912339385 2.295821931146859 0.012675274079095356 0.02557303190669587 6397.684276780361 -3.806022804013894 0.15146684039777625 KGENSVSVDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGENSVSVDGK 11 1 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3;O14617-4 O14617-5 AP3D1 AP-3 complex subunit delta-1 0 121.04 0.00067324 78114000.0 308140.0 234980.0 232770.0 218450.0 232680.0 326720.0 262990.0 293780.0 404760.0 285470.0 False True 306481.00847757276 242801.16725159064 265541.9927268904 246105.74760181675 262310.4187975902 304134.61541615345 250268.1689806376 315703.3553846125 305012.3215061256 267251.0601968368 1.1467906179748815 0.9085133921368235 0.9936050114499541 0.9208784706805427 0.9815131083273992 1.1380108845673091 0.9364534187303469 1.1812987950434675 1.1412950851587893 1.0 18.027836145629294 2.4233768603921333 1.2782581837696154 1.1027824431468447 0.9845864859520294 0.1406648056787707 0.0928594125455717 0.6801026963163643 2.231165606222079 0.049942003161150446 0.0344503404887039 265.07993803109264 -2.4233768603921333 -0.11819595719481535 KGEPER ddPTM_BT-474_Trastuzumab_2h_R1 1 KGEPER 6 1 Q9Y2A7;Q9Y2A7-2;P55160-2;P55160 Q9Y2A7 NCKAP1;NCKAP1L Nck-associated protein 1;Nck-associated protein 1-like 0 88.64299999999999 0.081888 79041000.0 172560.0 168960.0 153360.0 133650.0 141680.0 108560.0 168860.0 160790.0 215760.0 191160.0 False True 171630.95613321816 174583.7314615232 174951.75497098383 150570.07629655668 159722.10819684793 101055.50272275216 160691.59669215747 172788.96627507624 162588.83903587735 178960.00513969015 0.9590464416853856 0.9755460798363802 0.9776025365802956 0.8413616002023846 0.8925016965224952 0.56468205085193 0.8979190437926453 0.9655172178845379 0.9085205317744932 1.0 17.44927767738035 3.743527539749358 24.18314215326814 0.8626677596221235 0.9712131376892561 0.15367397170994757 0.1109641445471867 515.0104439267184 2507486.7006039605 0.03039438531155796 0.05266660671291346 5540.226748520328 -3.743527539749358 0.1085453780671326 KGEQCVHTASGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGEQCVHTASGPR 13 1 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 0 111.83 0.00061581 44930000.0 92931.0 110920.0 108030.0 101250.0 102030.0 110020.0 127900.0 110870.0 131070.0 107890.0 False True 92430.66982160478 114611.90514744399 123239.68498640705 114068.23961860366 115022.9157208102 102414.5763592225 121712.9883745526 119143.68238645256 98769.5547480185 101004.36783072392 0.9151155717989539 1.1347222660660115 1.2201421347732995 1.129339671822647 1.1387915017059496 1.0139618568858526 1.2050269804028164 1.179589407322749 0.9778740946485522 1.0 16.624058156636387 1.2273140523557495 24.985359756504504 0.9889369251633869 1.1257484433613945 0.2538579606079724 0.08687053166775253 312.43030733765596 694072.3659552316 0.07973005357962344 0.020651001365664196 16.8777306738384 -1.2273140523557495 0.13681151819800752 KGES(ph)PSLESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGESPSLESR 10 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 KGES(0.943)PS(0.057)LESR 119.62 0.001315 0.0 397530.0 358580.0 287930.0 291270.0 295420.0 389160.0 385860.0 346580.0 485260.0 326080.0 True False 395389.7426497349 370515.1185338127 328468.0412675753 328144.7521354142 333039.98590847594 362258.28518410324 367194.4776716566 372443.5594975806 365674.1751508611 305269.2952288666 1.2952162200043837 1.2137320206279834 1.0759943643245093 1.074935335011002 1.0909711232464079 1.1866843172436023 1.2028542778806608 1.2200492002261545 1.197874076646679 1.0 18.2197229612997 KGESGQSWPR ddPTM_BT-474_Trastuzumab_2h_R1 6 KGESGQSWPR 10 1 A0A087WYT3;Q15185-4;Q15185;Q15185-3;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 ;;;;; 128.88 0.0005097 23101300000.0 7907600.0 7881360.0 7512960.0 7059950.0 7432880.0 8520720.0 8366360.0 8029010.0 9983800.0 8847980.0 False True 7865026.36021695 8143686.303217278 8570719.464181025 7953738.946127024 8379413.209868639 7931702.6820174055 7961647.204201097 8628175.496686677 7523426.266065963 8283294.341263218 0.949504633807027 0.9831458315623914 1.0346993733502863 0.9602144531440209 1.0116039421811447 0.9575541270464869 0.961169176922781 1.0416357479542209 0.9082649916939479 1.0 22.981773224074892 KGESQTDIEITR ddPTM_BT-474_Trastuzumab_2h_R1 7 KGESQTDIEITR 12 1 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ;;;;;; 206.45 1.4425e-07 11821730000.0 7832730.0 7712800.0 6573120.0 6771530.0 7487440.0 9769350.0 9054580.0 9374790.0 11742860.0 10309750.0 False True 7790559.451978114 7969515.885513939 7498558.161416757 7628805.003699385 8440921.102466168 9094017.829076268 8616575.373545388 10074384.434019035 8848989.499262342 9651772.928378962 0.8071635656773121 0.8257048673494267 0.7769099228773669 0.7904045257082795 0.8745461756199687 0.942212161077398 0.8927453471486261 1.043785893926024 0.9168252884652717 1.0 23.202362543834 2.7439572034504502 1.2141286329205279 0.9803140060835159 0.7972682388170446 0.7748229508130539 0.040559898321070126 0.1986086031140478 0.6051986792989761 0.018882202586138992 0.017769875925299546 554.5710613371198 -2.7439572034504502 -0.18304576726647137 KGESVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 KGESVKR 7 2 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 ;; 95.741 0.0074485 3128595000.0 1870288.0 2002110.0 1802960.0 1719420.0 1813220.0 1608790.0 2451320.0 2268730.0 3658950.0 2653950.0 False True 1860218.5772165318 2068749.0210489493 2056801.0963907458 1937098.3957038978 2044122.8192030566 1497578.1339843087 2332740.2866482283 2438034.15297751 2757250.7999180765 2484572.6388390884 0.7487076643030711 0.8326377698562953 0.8278289248777134 0.779650538455983 0.8227261249074082 0.6027507952772309 0.9388899524137868 0.9812690178044771 1.1097485164315406 1.0 21.24456629038749 2.014517272295942 24.109632823050706 1.0112133660893021 0.7769744931745965 0.7398155417279552 0.07047654685764393 80.09782169370175 133022.07135873157 0.026591349044340264 0.019629329070877003 103.39922229981539 -2.014517272295942 -0.23423887291470558 KGETLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGETLR 6 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 87.58200000000002 0.08382200000000001 494130000.0 757940.0 872390.0 829890.0 768810.0 787240.0 719670.0 898960.0 841520.0 1156030.0 928060.0 False True 753859.3352550498 901426.9737791083 946731.2984668078 866141.2671721342 887490.3476629488 669920.906820956 855473.87043931 904318.4955519767 871141.8965083676 868830.4162478597 0.8676714364014495 1.0375177444546893 1.089661780667592 0.9969048631062678 1.0214770697090394 0.7710606054908662 0.9846269817921068 1.040845806777088 1.0026604504369108 1.0 19.72871508471748 1.9870637042603478 24.759808040263223 1.0174644923781284 0.9689220844542542 0.0630784917377496 0.0856155440285731 1774.0252275519317 3395447.310159262 0.03589278036579331 0.024389036100642202 97.06523364370202 -1.9870637042603478 -0.04854240792387421 KGFDDSVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGFDDSVGR 9 1 Q8ND04;Q8ND04-2;Q8ND04-3 Q8ND04 SMG8 Protein SMG8 0 ; 97.734 0.010407 863150000.0 576440.0 660130.0 585180.0 594580.0 601690.0 565300.0 631910.0 587920.0 787340.0 698270.0 False True 573336.5110885042 682102.0279929886 667568.257524258 669853.7670363396 678311.6550039633 526222.1415730639 601342.0991693786 631793.5757972684 593310.6068154793 653705.8107809764 0.8770558585115593 1.0434388324896293 1.0212059408294385 1.0247021764057311 1.0376405468900307 0.804983117626553 0.9198971299504906 0.9664799752085275 0.9076110339399561 1.0 19.318281995762987 KGFIDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGFIDGR 7 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 69.905 0.093759 950800000.0 2411300.0 3207900.0 2793600.0 3030400.0 2821100.0 3045900.0 3209900.0 2646700.0 2989900.0 3216000.0 False True 2398317.828720614 3314673.0122834984 3186914.597593511 3414048.3292860887 3180350.3630302683 2835344.1022773683 3054624.8739912156 2844210.193670281 2253079.207607385 3010752.1266438793 0.7965842845369163 1.100945170128769 1.0585111173353225 1.133951978003506 1.0563308533058955 0.9417394667550927 1.0145720223724435 0.9446842762312537 0.7483443049557582 1.0 21.52169250608754 1.5508358150180521 3.8318409529910817 0.8665092203262795 1.0225382182165845 0.2159819079429478 0.10548708357545501 0.23761175119392633 7.816660298617283 0.06441259628952689 0.026655849090027675 35.549689759795235 -1.5508358150180521 0.156028997890305 KGFSEGLWEIENNPTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGFSEGLWEIENNPTVK 17 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 ; 172.93 2.4705e-09 1575830000.0 1826530.0 1782880.0 1582800.0 1707030.0 1618250.0 2035300.0 2042590.0 1796610.0 2731200.0 2208160.0 False True 1816696.1654265623 1842222.0830262825 1805644.4820557716 1923139.8229742732 1824324.5453807819 1894604.501580855 1943782.118248454 1930682.1612007243 2058132.3562049887 2067233.338299114 0.8788055667297385 0.8911534314467049 0.8734594438871746 0.930296443727345 0.8824957064991059 0.9164928150489798 0.9402819131427933 0.9339449618151273 0.995597506132707 1.0 20.979269811018074 1.6440623831502226 0.6277448674261035 1.0053180697839772 0.8865168867261433 0.8370187897687034 0.017485767264737256 0.2574868140381082 0.2194950122636461 0.01586463711613567 0.008274315732674054 44.06181504589535 -1.6440623831502226 -0.11880118305783394 KGGDGIKPPPIIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGGDGIKPPPIIGR 14 2 J3KQ32;Q9NTK5;Q9NTK5-3;C9JTK6 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 173.71 1.4938e-06 5578400000.0 5065500.0 4967300.0 4876600.0 4827500.0 4719100.0 6037100.0 6316500.0 5849200.0 8237900.0 6585300.0 False True 5038227.910829964 5132633.577703742 5563182.891832946 5438661.00502528 5320049.4127028845 5619769.486804789 6010946.763626754 6285697.005635773 6207779.927204552 6165020.516041025 0.8172280850843543 0.832541199879048 0.9023786502182544 0.8821805200605902 0.8629410719494648 0.9115573049890874 0.9750083958336587 1.0195743857268205 1.0069358100353876 1.0 22.5556742649809 2.3110341720424565 1.6242247559262555 1.013050608649506 0.8594878546179054 0.8966216777333766 0.02277319728465184 0.11835250205118675 0.6280912791748992 0.012773464149083568 0.00840326211468704 204.6605665582354 -2.3110341720424565 -0.15356275403160047 KGGEFDEFVNDDT(ph)DDDLPISK ddPTM_BT-474_Trastuzumab_2h_R1 6 KGGEFDEFVNDDTDDDLPISK 21 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK 266.36 3.1665999999999997e-37 8261360000.0 6423440.0 4929505.0 4202587.0 3986630.0 4315083.0 6036282.0 5768571.0 5961420.0 9154080.0 6321748.0 True False 6388856.912751283 5093580.593976307 4794274.720058964 4491336.94924162 4864583.242549257 5619008.033219412 5489523.1826488 6406291.431877395 6898179.642387586 5918288.630319235 1.0795108707644536 0.8606509266685692 0.8100778822273084 0.758891164285672 0.8219577561033653 0.9494312265260912 0.9275524607782931 1.0824567424877074 1.165569993840516 1.0 22.496748626683342 1.9306652644513806 1.7832318353273926 1.0981366917205486 0.8637651259111937 0.49411833271441186 0.09110673228447619 0.28159062915782596 1.6653653509950765 0.060020860036091805 0.028372721294579142 85.24428343950557 -1.9306652644513806 -0.23437156580935492 KGGEFDEFVNDDT(ph)DDDLPISKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGGEFDEFVNDDTDDDLPISKK 22 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 KGGEFDEFVNDDT(1)DDDLPISKK 162.21 7.8599e-10 106280000.0 260230.0 224990.0 196950.0 212930.0 212490.0 290140.0 319110.0 260920.0 593360.0 332860.0 True False 258828.95059427072 232478.65614067315 224678.84807991172 239886.9161677952 239549.34197309616 270083.3047160953 303673.4301814189 280391.1753249136 447134.37861664896 311616.58982421685 0.830600677391009 0.7460406914529631 0.7210105476305136 0.7698143295359069 0.7687310297190086 0.8667167074399008 0.9745098306631277 0.899795403970894 1.434886309707958 1.0 18.24941251598792 1.769979154994596 1.2477695670807167 1.174161462655936 0.7716885076159705 0.6032563158135196 0.12557853510540612 0.28769198746765423 0.8394923762279503 0.09774118310285256 0.03879310532843651 58.88153930701505 -1.769979154994596 -0.4024729550399655 KGGHERPPS(ph)PGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGGHERPPSPGLR 13 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR 127.97 8.911200000000001e-05 574920000.0 135322.0 139868.0 127626.0 130291.0 102726.0 156910.0 155341.0 142715.0 197130.0 178747.0 True False 134593.44138768766 144523.42182800837 145594.63145492162 146785.82724096274 115807.54719529496 146063.18102640982 147826.56236975273 153365.11799208604 148549.95290666717 167339.21342699399 0.8043150115941443 0.8636554389629686 0.8700568651736911 0.8771753149479324 0.6920526565389825 0.8728568638224992 0.8833946290433943 0.9164924039695902 0.887717528154128 1.0 17.35241603330755 1.2653407547855156 0.7436855521095158 0.9915075859298658 0.8298212872303758 0.46844959140891396 0.05432970488792795 0.5585031942522247 0.7061159416224583 0.05285445946993667 0.02145725678089269 18.422168690306385 -1.2653407547855156 -0.16168629869948992 KGGHS(ph)SPASSDKNSNSNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGGHSSPASSDKNSNSNHR 19 2 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 KGGHS(0.5)S(0.5)PASSDKNSNSNHR;KGGHS(0.5)S(0.5)PASSDKNSNSNHR 62.611 0.021385 32807300.0 7047.5 14064.099999999999 15785.7 13951.3 14644.0 17930.0 20656.0 14567.7 19344.9 18926.0 True False 7009.5570430508615 14532.215066572022 18008.189348235912 15717.533149540986 16508.826598211763 16690.541302680052 19656.790366417183 15654.815747281717 14577.608603379433 17718.126476636204 0.39561502466380577 0.8201891484257522 1.0163709674373413 0.8870877612408244 0.93174786961708 0.9420037341244197 1.1094169799689249 0.8835480302008654 0.8227511313118813 1.0 14.112938440227646 4.7091741371474996 2.8535038711983534 0.9468632189188871 0.3163924382327801 0.8251386109834895 0.07638687372282521 0.14306515866031055 1.7058903809017676 0.018730296569929653 0.20211889509809272 51188.70434924039 -4.7091741371474996 -0.630470780686107 down KGGSWIQEINVAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGGSWIQEINVAEK 14 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 134.44 6.207100000000001e-05 642700000.0 1040200.0 946420.0 862020.0 875440.0 835060.0 1125400.0 1051000.0 1070900.0 1402200.0 1156900.0 False True 1034599.6787770841 977921.017577029 983384.923187841 986270.6142391154 941399.941211602 1047603.7469066455 1000159.1147901078 1150815.9959200148 1056646.5985173678 1083065.6515280795 0.9552511219586591 0.9029194270885577 0.9079642788047053 0.9106286519636205 0.8691993323612435 0.9672578439068754 0.923451974844738 1.062554236021009 0.9756071545862086 1.0 20.04668926588379 1.7583633622871315 24.999999999999712 1.0170056535005747 0.9179994627056866 0.6296669803197396 0.03268852899278598 5.0082991081146595 6328.539061233946 0.014552287343332691 0.008070131657149688 57.32754742627106 -1.7583633622871315 -0.09900619079488815 KGGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 39 2 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 KGGSYVFQSDEGPEPEAEES(0.998)DLDS(0.002)GSVHSASGRPDGPVR;KGGSYVFQSDEGPEPEAEES(0.987)DLDS(0.008)GS(0.001)VHS(0.002)AS(0.002)GRPDGPVR;KGGSYVFQSDEGPEPEAEES(0.998)DLDS(0.002)GSVHSASGRPDGPVR;KGGSYVFQS(0.001)DEGPEPEAEES(0.774)DLDS(0.056)GS(0.056)VHS(0.056)AS(0.056)GRPDGPVR 215.55 9.9275e-40 980500000.0 369610.0 427094.0 424375.0 415860.0 472278.0 515637.0 518250.0 497055.0 548775.0 544347.0 True False 367620.0608275312 441309.5656062249 484123.31126637553 468507.8333609139 532419.8038889817 479992.22786893626 493180.2675927432 534147.7680941481 413536.7544582572 509606.308421086 0.7213805142376063 0.865981363090922 0.949994737636462 0.9193524994078124 1.044766901607986 0.9418883164066334 0.9677671948778742 1.048157684211365 0.8114828007909061 1.0 18.959023611276482 4.882184332394091 1.1731662010899528 0.9727139356556579 0.5371564217683777 0.5707702843844653 0.0640898568376405 1.3738439633532817 1.2833169308441623 0.017535131026644942 0.7908821710832351 76240.25362739236 -4.882184332394091 -0.43555751388728015 KGHYAER ddPTM_BT-474_Trastuzumab_2h_R1 1 KGHYAER 7 1 P16104 P16104 H2AFX Histone H2AX 0 69.954 0.093546 13149000.0 28014.0 36636.0 41722.0 27893.0 17921.0 17988.0 30962.0 16301.0 55388.0 25634.0 False True 27863.175736647987 37855.40711307031 47596.09494587496 31424.25094006628 20203.13312391101 16744.531899197365 29464.249773673942 17517.463394800783 41738.369561175256 23998.016173628454 1.1610616283885573 1.5774390199248975 1.9833345640536137 1.3094520277304653 0.841866801728067 0.6977465044630655 1.227778561381768 0.7299546457532109 1.7392424965127646 1.0 14.550627528101463 3.468319176061117 7.000234445008721 1.0078561576130627 1.5868494210384945 0.3375361585001403 0.33513379284673234 0.13879782577040947 36.73973205543774 0.08998225222168581 0.1264453307624218 2939.809412478066 -3.468319176061117 0.5789932634254318 KGIEESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGIEESLR 8 1 E9PF18;Q16836;Q16836-3;Q16836-2;A0A0A0MSE2;A0A0D9SFP2;A0A1W2PQV5;A0A1W2PQC2;A0A1W2PRT2;A0A1W2PP40;A0A1W2PQ55 E9PF18 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial 0 85.53299999999999 0.026737 117430000.0 126690.0 167020.0 184560.0 122810.0 115140.0 238920.0 139150.0 115930.0 241550.0 158620.0 False True 126007.91511658236 172579.15973427775 210544.44377572226 138357.73340800687 129802.39651175252 222404.0227571843 132418.7828953791 124581.28528061199 182023.23910417195 148496.73579858558 0.8485568011911988 1.1621747697427942 1.4178388679283527 0.9317223888050253 0.8741094261345298 1.497703108160191 0.8917285769499074 0.8389496550926786 1.2257726617712341 1.0 17.180071693012003 KGIIRPGTAFELLEAQAATGYVIDPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGIIRPGTAFELLEAQAATGYVIDPIK 27 2 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 53.262 0.05188 92781000.0 147910.0 161970.0 138210.0 143350.0 157710.0 198050.0 173060.0 164190.0 235890.0 217480.0 False True 147113.6689943458 167361.07353706742 157668.76665714465 161498.0953019933 177793.43367959405 184359.26965955313 164688.4266465993 176442.6915399265 177758.0702640579 203600.24020600462 0.722561372449732 0.8220082322483016 0.7744036377246605 0.7932117130047982 0.8732476616908752 0.9054963268855514 0.8088812983715836 0.8666133761011291 0.8730739712497423 1.0 17.635379737931988 -4.999996483992673 0.026270945488599266 2.169614399626249 4.307658673656685e-07 0.754300532464399 0.03649815461258463 951.7947264069101 1.8870605576744413 115.09470736363721 52.175788672766636 1.0000080959388301e-05 4.999996483992673 -2.1696139688603817 KGIVDQSQQAYQEAFEISK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGIVDQSQQAYQEAFEISK 19 1 B7Z2E6;H0YB80;P63104-2;P63104;B0AZS6 B7Z2E6;P63104 YWHAZ 14-3-3 protein zeta/delta 0 184.26 2.8949e-15 0.0 466510.0 450200.0 428420.0 408740.0 395690.0 469650.0 501370.0 454480.0 558680.0 498840.0 False True 463998.36199413316 465184.6348483533 488737.812106605 460486.4420909436 446078.7760616229 437184.20093718247 477116.8176806047 488395.6054026786 421000.79992845736 467003.604121589 0.9935648416823066 0.9961050209095129 1.0465397007500552 0.9860447286206626 0.9551934334654126 0.9361473810453875 1.0216555364236175 1.045806929737356 0.9014936848728167 1.0 18.833074158479413 3.517978442965867 24.67851457662918 0.9835531972069126 1.0114431887330324 0.11465502584724396 0.041436486097479526 1216.7746596125317 734951.2849762912 0.011778009870410987 0.018243379715074462 3295.9335177738417 -3.517978442965867 0.027889991526119817 KGLDDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGLDDFR 7 1 Q6ZV65-1;Q6ZV65 Q6ZV65-1 FAM47E Protein FAM47E 0 69.344 0.096195 112050000.0 417440.0 490820.0 429330.0 467630.0 431140.0 501640.0 514000.0 438040.0 590650.0 524460.0 False True 415192.54942194425 507156.64699304476 489775.93219674315 526831.9100528157 486043.1234330111 466962.8075335423 489135.8563293195 470728.7691220502 445092.22180450923 490988.51378720347 0.8456257891236342 1.032929758541864 0.9975303259518086 1.0730025148432432 0.9899276862587957 0.95106666331491 0.9962266786169932 0.9587368256155705 0.9065226768164563 1.0 18.90532974888295 0.02087733964239695 8.0777936930277 0.9999999922611044 0.9775096057899112 0.012164787781832165 0.06048122641711475 7802684.587220346 0.23253812339961283 0.0564966083784463 0.013702440225499393 1.0492460420375207 -0.02087733964239695 -0.02249038647119317 KGLIAAICAGPTALLAHEIGFGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGLIAAICAGPTALLAHEIGFGSK 24 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 ; 203.66 7.610600000000001e-25 553860000.0 862060.0 919280.0 905740.0 932660.0 819710.0 1073840.0 1075500.0 969180.0 1583710.0 1238560.0 False True 857418.7647438702 949877.6790835061 1033260.3191667895 1050734.660372216 924095.2096981807 999607.9683474585 1023473.9561910189 1041505.1329963205 1193425.8911267577 1159514.0404154365 0.7394638916460813 0.8192032575501882 0.8911149698511523 0.9061853705503674 0.7969676756713452 0.8620921640494443 0.8826749142462506 0.8982255468188767 1.029246606362068 1.0 20.14508885883382 1.44430102256418 1.7573247813489499 1.0191543009764672 0.8418394952452302 0.6669545000705694 0.04773619640026014 0.2107209985199438 1.2179217070084485 0.04304768277619562 0.013729799968282105 27.816406384903317 -1.44430102256418 -0.17731480573123704 KGLTPSQIGVILR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGLTPSQIGVILR 13 1 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 ; 188.13 5.4367e-07 0.0 1028020.0 1351930.0 1254080.0 1330290.0 1283590.0 1261660.0 1438020.0 1246370.0 1729710.0 1414310.0 False True 1022485.25454376 1396928.1727910575 1430643.5633412313 1498704.5776022936 1447047.5780660096 1174444.413828183 1368457.4788301338 1339380.4583386197 1303446.1474265272 1324047.5249482903 0.7722421101037837 1.055043830730784 1.0805077131933796 1.1319114679518958 1.0928970076980604 0.8870107694012344 1.033541057284615 1.0115803497241749 0.9844406056930867 1.0 20.336523476043848 4.741656591996522 24.453542355853884 1.0324231749191446 0.7722419783730653 0.5927417113862041 0.0642750773739099 159.51584940908984 1259848.8666607605 0.01619286631693957 0.11511997478546249 55164.10697600329 -4.741656591996522 -0.2601811965460793 KGLVGPELHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGLVGPELHDR 11 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 152.38 2.1405e-05 1090600000.0 1318040.0 1708630.0 1506450.0 1474390.0 1431930.0 1650660.0 1679110.0 1412400.0 1956840.0 1721550.0 False True 1310943.8190880117 1765500.7166613557 1718545.0657018702 1661047.6228273863 1614277.7977859443 1536553.759435687 1597885.0344768944 1517800.4600218767 1474603.0023125992 1611679.2051068917 0.8134024531271816 1.095441767236962 1.066307153592573 1.0306316651378649 1.0016123510626795 0.9533868492978278 0.9914411189358974 0.9417509732783401 0.9149482090729084 1.0 20.620133182136676 2.8199985764711726 4.060319406610081 0.9579836386638341 1.0130991417942632 0.0621169612250706 0.07406349425304232 0.5399247154124192 16.693562269297026 0.022824651535090536 0.024097602133039218 660.691282392634 -2.8199985764711726 0.05511550313042912 KGNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 9 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK 187.48 1.5352000000000003e-17 4872120000.0 7033770.0 3459320.0 2975210.0 2564720.0 2775480.0 5231020.0 4805220.0 4949250.0 9402450.0 4335650.0 True False 6995900.963845307 3574461.3749969015 3394093.7070110897 2889413.289033337 3128920.9264411884 4869411.899896563 4572773.150876992 5318588.166782266 7085342.1838750765 4058945.105063285 1.7235761466983994 0.8806380186167041 0.8362009387062579 0.7118631107942236 0.7708704713788939 1.1996742438872283 1.126591523786005 1.3103375456218054 1.745611729273339 1.0 21.952673397857314 2.038972154015102 1.682214888738025 1.3859519894519943 0.9688530512840475 0.1745057333098916 0.31966939091149565 0.5664709926969688 3.012673429499172 0.19660493964264517 0.10032449263377774 109.38862265002159 -2.038972154015102 -0.41709893816794674 KGNAEGS(ph)S(ph)DEEGKLVIDEPAKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGNAEGSSDEEGKLVIDEPAKEK 23 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 KGNAEGS(1)S(1)DEEGKLVIDEPAKEK;KGNAEGS(1)S(1)DEEGKLVIDEPAKEK;KGNAEGS(1)S(1)DEEGKLVIDEPAKEK 107.08 0.0019824 5028050000.0 3024540.0 1544030.0 1137580.0 1225750.0 1370920.0 2627650.0 2610820.0 2320810.0 6098990.0 2066160.0 True False 3008256.212697983 1595422.1051641542 1297741.375977385 1380929.824321022 1545498.535920545 2446006.740322768 2484524.6622990537 2494000.6270343894 4595975.6367789535 1934295.8998714292 1.5552202808773667 0.8248076756354601 0.6709115063851631 0.7139186018089637 0.7989979899266048 1.2645463088069162 1.2844594575546573 1.2893583795530783 2.3760457937611528 1.0 20.883377078008287 2.1106921289593075 1.3449287780216836 1.605757140797987 0.8960418081027975 0.31393314184621635 0.40420412429906233 0.497714773800337 1.7021796137825258 0.262384196641933 0.13521117845527453 129.03042535813628 -2.1106921289593075 -0.7097153326951894 KGNAEGS(ph)SDEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 KGNAEGS(0.5)S(0.5)DEEGKLVIDEPAK 224.93 1.5612000000000005e-25 835260000.0 1386300.0 751660.0 574920.0 559180.0 568950.0 1006000.0 1010500.0 982980.0 1699800.0 953630.0 True False 1378836.3148324103 776678.548711934 655863.7387057779 629972.1306659835 641402.410069147 936457.5878692775 961618.2545151307 1056334.9590713 1280907.0661530623 892768.5169562822 1.544449976275239 0.8699663282928771 0.7346403084887174 0.7056388287680092 0.7184420125564931 1.0489366169205254 1.0771193610114949 1.1832126010364536 1.4347583296508504 1.0 19.767926626568183 2.1604960697085223 1.915530977261382 1.2187488446206947 0.8945973766284318 0.19080734467543492 0.249702597583715 0.5161406842286231 3.7244564011743555 0.13397885135772922 0.07996738212519049 144.7091757100452 -2.1604960697085223 -0.3241514679922629 KGNAEGSS(ph)DEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 KGNAEGS(0.073)S(0.927)DEEGKLVIDEPAK 209.28 1.3909000000000002e-22 890180000.0 984770.0 460290.0 428010.0 343020.0 354950.0 766600.0 737890.0 744420.0 1275400.0 696590.0 True False 979468.1077382329 475610.4743988194 488270.08767038863 386446.29682936706 400150.7785465222 713606.746382294 702195.4416864619 799972.4004881663 961094.7594844184 652133.029819297 1.5019452518907668 0.7293151130998667 0.74872773704728 0.5925881364059254 0.6136029924100027 1.0942656080156392 1.0767671772138838 1.2267012463850127 1.473771018392878 1.0 19.31480676693619 KGNEQHAFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGNEQHAFTR 10 1 Q13045-3;Q13045;Q13045-2;K7EQZ7 Q13045-3 FLII Protein flightless-1 homolog 0 62.408 0.055363 84892000.0 253180.0 294870.0 272840.0 271530.0 258660.0 262010.0 306030.0 243670.0 375960.0 314010.0 False True 251816.90701094255 304684.569697321 311253.50043220655 305905.6701594022 291598.81780206604 243897.86540519827 291226.1597518709 261853.89273118862 283309.69560589775 293969.61296251335 0.8566086286035759 1.0364491983604238 1.0587948097611612 1.0406030306214367 0.9919352373309767 0.8296703286686296 0.9906675619190876 0.890751564735978 0.9637380297603244 1.0 18.16530750877057 2.9742033998287116 24.832631834769348 0.9279484088684401 1.0065718451410328 0.15712324497308805 0.06979626733530193 997.3741763289794 960105.0916821089 0.020495692251019236 0.021818997009833085 942.3308295120628 -2.9742033998287116 0.07862343627259272 KGNNESYHYAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGNNESYHYAR 11 1 Q04446;E9PGM4 Q04446 GBE1 1,4-alpha-glucan-branching enzyme 0 ; 100.55 0.0025595 119534000.0 171135.0 232279.0 241711.0 215080.0 198366.0 254660.0 281450.0 246481.0 282480.0 295600.0 False True 170213.62817488593 240010.26609937943 275741.8078103254 242309.10594735094 223626.73429260272 237055.95360515907 267835.1882565894 264874.66382515774 212866.58903807303 276734.5549241077 0.6150790537219528 0.8672941699138381 0.9964126376843162 0.8756011912346918 0.8080911122715796 0.8566185515580801 0.9678415054818187 0.9571434398490553 0.7692085619609378 1.0 18.0781432741674 4.72449765782218 4.179048506373036 0.9040412001583134 0.5952792923586311 0.5725155515257582 0.07432431475575571 0.14462574767462993 5.649571757860097 0.017890371195737456 0.13064281920320955 53027.0732837645 -4.72449765782218 -0.30876190779968227 KGNS(ph)PNSEPPTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 KGNSPNSEPPTPK 13 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 KGNS(0.954)PNS(0.046)EPPTPK;KGNS(0.997)PNS(0.003)EPPTPK;KGNS(0.996)PNS(0.004)EPPTPK;KGNS(0.999)PNS(0.001)EPPTPK 181.51 7.346e-06 4072860000.0 3057150.0 2458190.0 2207890.0 2033750.0 2140490.0 3033700.0 2997820.0 2980420.0 4493150.0 2988780.0 True False 3040690.644081298 2540009.3681427683 2518741.7206760915 2291222.541474916 2413068.7138217906 2823987.4595616567 2852803.9938154877 3202834.074666102 3385873.387625381 2798033.5015767063 1.0867241733767137 0.9077837583829714 0.900182831712618 0.8188688735084123 0.8624159476510964 1.0092757852864611 1.0195746377618131 1.1446732402815365 1.2100903672945387 1.0 21.415981805690038 2.1789354120551794 1.832234028563848 1.1291732188865333 0.9117154145621579 0.5045044174083797 0.0842054891676379 0.26449658810258675 1.7500984655294085 0.045049007290376634 0.02698101199914912 150.98555928916008 -2.1789354120551794 -0.21745780432437545 KGNYAER ddPTM_BT-474_Trastuzumab_2h_R1 11 KGNYAER 7 1 Q99878;Q96KK5;Q6FI13;P0C0S8;Q16777;Q9BTM1;Q9BTM1-2;Q96QV6;Q8IUE6 Q99878 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG;HIST2H2AC;H2AFJ;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-C;Histone H2A.J;Histone H2A type 1-A;Histone H2A type 2-B 0 ;;;;;;;;;; 153.71 0.0027702 73394690000.0 22978400.0 31075100.0 31788120.0 24008140.0 17348280.0 17287880.0 27918730.0 21767980.0 42478400.0 23265020.0 False True 22854686.84754024 32109415.91820535 36263610.98870778 27047568.062389955 19557480.626688432 16092809.54689215 26568194.369994294 23392417.20316271 32010167.50139793 21780226.50541427 1.0493319177309233 1.4742461888641691 1.66497859788984 1.241840531624696 0.8979466132653261 0.7388724604352345 1.2198309491129398 1.0740208416724992 1.4696893759778227 1.0 24.37651562178053 3.4766152262905696 24.873974633837676 1.06643908446548 1.4122279577168713 0.2951578479012624 0.22928667333811995 19.37509157466992 952347.9151052315 0.06470231507674175 0.0884217873840505 2996.506515100901 -3.4766152262905696 0.3457888732513912 KGNYSER ddPTM_BT-474_Trastuzumab_2h_R1 7 KGNYSER 7 1 A0A0U1RR32;A0A0U1RRH7;P20671;A0A3B3IS11;Q7L7L0;P04908 A0A0U1RR32;Q7L7L0 HIST1H2AD;HIST3H2A;HIST1H2AB Histone H2A type 1-D;Histone H2A type 3;Histone H2A type 1-B/E 0 ;;;;;; 123.72 0.0067604 27999170000.0 11018260.0 14266940.0 14467000.0 10994720.0 8547260.0 7819660.0 13150950.0 10811980.0 19406280.0 11330670.0 False True 10958938.912403762 14741806.473352648 16503827.85058179 12386650.424685953 9635702.89742088 7279105.309699662 12514788.306992365 11618824.849722004 14623862.324829284 10607536.939925367 1.033127574711125 1.3897483041389596 1.5558586261871559 1.167721639324605 0.9083826860082257 0.6862201235710123 1.1798015295981064 1.095336732318158 1.378629403569362 1.0 23.338586366922613 3.4826108324455824 23.94472118892149 1.042311631151092 1.337461035301318 0.2772245939564445 0.20601055731304174 178.66695672381977 779319.6125834044 0.05890919569568776 0.08234076415466762 3038.1613352476115 -3.4826108324455824 0.29514940415022606 KGPELPLVPVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGPELPLVPVKR 12 2 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 ; 87.18 0.0060147 951020000.0 898990.0 927620.0 948780.0 853240.0 737110.0 1018380.0 1040660.0 1006160.0 1476610.0 1135830.0 False True 894149.9377271796 958495.2709418692 1082359.9770564039 961260.0965153312 830976.5893067371 947981.7876086618 990319.3000927422 1081244.7683769572 1112719.2510602854 1063340.3569670122 0.8408878040494786 0.9014002568996866 1.017886671905919 0.9040003891671651 0.7814775239763766 0.8915130338066073 0.9313286132743523 1.0168378932414586 1.046437524701985 1.0 20.020172021992547 1.8316763334260298 2.6989490736151347 1.0266824216520978 0.8922961702375019 0.5178678496368618 0.056665048610648555 0.2341632356454183 3.136515109562175 0.03497128706867317 0.017212704979591563 67.86976312197146 -1.8316763334260298 -0.13438625141459593 KGPGAGSALDDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGPGAGSALDDGR 13 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 0 68.277 0.081559 129170000.0 343210.0 306680.0 306270.0 284290.0 272790.0 394460.0 361880.0 313090.0 452120.0 367250.0 False True 341362.19549421576 316887.65840802516 349390.15385343775 320281.08485108963 307528.18954699405 367191.9086589609 344374.4818841524 336454.3656388057 340701.0840976125 343811.7905814565 0.9928751859175685 0.9216893285483401 1.0162250493578102 0.9315593403862863 0.8944666761628524 1.0680026651731862 1.0016366259625484 0.9786004286525257 0.9909522984113396 1.0 18.39125949546489 2.743009094710856 24.99953797602801 1.00369622482981 0.9522178066365438 0.33876247534330417 0.039229243625277355 505.1651616440635 2838929.9844096354 0.012247886062443397 0.012581784591744156 553.3616972329686 -2.743009094710856 -0.05147841819326626 KGPGLAVQSGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGPGLAVQSGDK 12 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 ; 134.61 0.0002282 1527790000.0 2180260.0 1934130.0 1851110.0 1610920.0 1764420.0 2135910.0 2198900.0 2185900.0 3018500.0 2226200.0 False True 2168521.7224096563 1998506.3478437238 2111730.1978634438 1814862.3068286516 1989108.4284633147 1988259.5690913198 2092530.8063862666 2349022.95777529 2274631.1208277545 2084122.0100542908 1.040496531368222 0.9589200335692742 1.0132469153321948 0.8708042514177828 0.9544107393268684 0.9540034410171246 1.0040346948457959 1.1271043376745964 1.0914097686480941 1.0 20.991008308623766 1.9445503858858246 4.928902275920698 1.0839343695978374 0.9633157348482648 0.46381436781651464 0.051202513902378614 0.16317636552395046 8.24976684928062 0.022640622717740325 0.013694008122383729 88.013721733867 -1.9445503858858246 -0.12061863474957257 KGPGQPS(ph)SPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 KGPGQPSSPQR 11 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 KGPGQPS(0.7)S(0.3)PQR;KGPGQPS(0.641)S(0.359)PQR;KGPGQPS(0.5)S(0.5)PQR 106.55 0.0014189 3189230000.0 2075280.0 1950610.0 1829560.0 1713940.0 1589950.0 1996740.0 2036000.0 1858300.0 2253110.0 1984360.0 True False 2064106.9230652861 2015534.874681353 2087146.1451794016 1930924.6282657743 1792420.708128023 1858710.0636203794 1937510.9017246964 1996975.7822561983 1697861.2306272038 1857716.4459039313 1.1110990203141196 1.0849529157829199 1.1235009249023653 1.0394076192431085 0.9648516123545773 1.000534859729879 1.0429529791786596 1.0749626438735143 0.9139506916520057 1.0 20.825098880890312 3.582321265943828 4.560955263751088 1.0104476734130132 1.1035936028835909 0.5546692724200223 0.04209011709996095 0.19582945590606451 6.621057648515359 0.011936613540990454 0.01872939549270982 3822.269156542337 -3.582321265943828 0.09314592947057765 KGPGQPS(ph)SPQRLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 KGPGQPS(0.628)S(0.372)PQRLDR 134.85 1.8945e-05 1484100000.0 670780.0 782280.0 671500.0 767930.0 702860.0 810620.0 960700.0 767740.0 1052400.0 883520.0 True False 667168.5950106641 808317.7169017533 766041.3632173679 865149.8592623635 792365.0548223917 754583.7473942277 914227.2707696055 825032.6573047271 793050.1214375107 827132.9971804722 0.8066037714429309 0.9772524124380766 0.9261404947313754 1.0459622118951644 0.9579657171499658 0.9122882897508017 1.105296577317094 0.9974606987232951 0.9587939595456316 1.0 19.657759797721955 5.581008385915076 1.10787899098004 0.9963077997444604 6.043280430331866e-14 0.5027192681505779 0.05370045628338278 7.521679387169257 1.904662133982359 0.015246501269728565 13.696715724297013 381073.1815726558 -5.581008385915076 -0.9963077997444 KGPGQPSS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGPGQPSSPQR 11 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 KGPGQPS(0.089)S(0.911)PQR;KGPGQPS(0.176)S(0.824)PQR;KGPGQPS(0.188)S(0.812)PQR;KGPGQPS(0.015)S(0.985)PQR 147.73 3.7246e-05 5844730000.0 4461870.0 3851620.0 3681940.0 3364440.0 3213200.0 4251100.0 4430660.0 3978180.0 4898030.0 4010860.0 True False 4437847.78768036 3979818.843346544 4200325.148003805 3790377.759036198 3622381.973871485 3957231.4630130064 4216332.049035146 4275051.9923887225 3690976.136739425 3754883.480929996 1.181886950745329 1.0599047516544606 1.1186299573172065 1.009452830769974 0.9647122187062663 1.053889283944676 1.1228929127757807 1.13853119919713 0.9829802057733247 1.0 21.84033670899644 5.842930186340262 1.2747300974097688 1.0565984311229872 2.668331404127771 0.30773074374152765 0.058545771549798474 30.169110831752057 4.479020235599777 0.017612511539843816 119.42890190862921 696514.5390808092 -5.842930186340262 1.6117329730047838 KGPGQPSS(ph)PQRLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 KGPGQPS(0.026)S(0.974)PQRLDR;KGPGQPS(0.017)S(0.983)PQRLDR;KGPGQPS(0.202)S(0.798)PQRLDR;KGPGQPS(0.17)S(0.83)PQRLDR;KGPGQPS(0.224)S(0.776)PQRLDR;KGPGQPS(0.004)S(0.996)PQRLDR 166.77 2.9557e-06 7654050000.0 2840580.0 3211660.0 3057800.0 3197720.0 2890730.0 3560680.0 3849950.0 3039330.0 4665070.0 3800420.0 True False 2825286.63289811 3318558.1616105284 3488311.66112594 3602551.024130385 3258847.3308009235 3314538.572539143 3663713.210262773 3266140.238005025 3515426.007235356 3557873.9418967394 0.7940940795085957 0.932736295834408 0.9804483571068526 1.0125572414771469 0.9159535677825612 0.9316065230720704 1.0297478972258387 0.918003361373678 0.988069297745059 1.0 21.762583965083216 4.721948578953911 2.9194526048254033 0.9674304298245444 0.7678313978807599 0.6687119109372066 0.03742327525589395 0.2181844381569092 2.735011104840068 0.008925549373640384 0.10053457632425587 52716.74403992441 -4.721948578953911 -0.19959903194378448 KGPGRPTGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGPGRPTGSK 10 2 P26583 P26583 HMGB2 High mobility group protein B2 0 ; 93.325 0.0049848 19216000000.0 8560100.0 7337200.0 7364400.0 6391100.0 5938200.0 8105600.0 8413400.0 7646900.0 10344100.0 8087700.0 False True 8514013.372716522 7581414.2665689355 8401243.507487696 7200212.604705761 6694394.571531071 7545278.950530024 8006411.699690859 8217550.50817141 7794935.158838605 7571536.061771667 1.1244763682370054 1.001304650036225 1.1095824465401656 0.9509579754971121 0.8841527685948375 0.996532128880134 1.0574355896044476 1.0853214514372376 1.0295051222426146 1.0 22.852154583391826 -0.3190561446796447 8.580792177930698 0.9999985237055398 1.026660899533229 0.012963135403539106 0.06959185489712082 0.0 0.0 0.07097250513612614 0.016728379886517295 0.47967143371140397 0.3190561446796447 0.026662375827689155 KGPPTQELDRDS(ph)EEEEEEDDEDGEDEEEVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGPPTQELDRDSEEEEEEDDEDGEDEEEVPK 31 2 Q14687;Q14687-2;Q14687-3;H0Y613;H7C3B5 Q14687 GSE1 Genetic suppressor element 1 1 KGPPT(0.009)QELDRDS(0.991)EEEEEEDDEDGEDEEEVPK 124.91 3.5429e-06 662380000.0 193840.0 132760.0 116110.0 104900.0 126650.0 179380.0 182980.0 148950.0 297910.0 175280.0 True False 192796.38697764842 137178.83634488526 132457.2787537879 118180.32924436076 142778.12678663738 166979.88281510025 174128.55834851938 160065.40535277428 224494.07228948016 164093.4803352422 1.1749180198004596 0.835979808976137 0.807206224666442 0.7202012475018441 0.870102373933092 1.0175899887915179 1.0611546418101168 0.9754525592714678 1.368086482356519 1.0 17.324158394124108 2.570257245787095 2.53241313696438 1.0854040031202692 0.8655003405760454 0.32357020618521837 0.14874864974824686 0.36022499935223334 4.555240156696116 0.05498484582491406 0.04936611778505778 371.75536586671336 -2.570257245787095 -0.21990366254422378 KGPQVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGPQVR 6 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;; 116.0 0.038405 9191700000.0 8684800.0 8566200.0 7990700.0 7989020.0 7718700.0 6847920.0 8762100.0 8246380.0 9925300.0 8514900.0 False True 8638042.001771986 8851320.788622761 9115721.103590505 9000429.112867324 8701630.692680765 6374539.408669765 8338243.748527496 8861766.749869157 7479342.807206118 7971471.7920273505 1.0836194654055358 1.1103747237085364 1.1435430421653845 1.129079967625186 1.0915964980750081 0.7996690667644646 1.0460105694492918 1.1116851418494929 0.9382637237312393 1.0 22.926414686391574 2.9769210106129957 24.76185464716176 0.9963189888719192 1.1171529016971045 0.4176899111150799 0.0773581847083804 795.2717191207819 853261.7492344659 0.025194048229244884 0.026895935939524388 948.2459808406942 -2.9769210106129957 0.1208339128251853 KGPS(ph)STGASGQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGPSSTGASGQAK 13 1 Q9NWH9;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 KGPS(0.55)S(0.352)T(0.097)GASGQAK 90.444 0.0074021 65811000.0 101410.0 79384.0 78477.0 69384.0 67601.0 75548.0 92018.0 89968.0 134950.0 86264.0 True False 100864.01982771022 82026.24845135861 89525.87946568789 78168.00728589813 76209.58664748118 70325.54458086293 87566.73779710385 96681.86900824716 101693.38073735473 80758.55766567403 1.2489576676848193 1.015697293541727 1.1085621394615417 0.9679222802554212 0.9436719630751111 0.8708122905314641 1.0843028940612642 1.1971718143913959 1.2592273026760472 1.0 16.30132752415691 -1.6138212963503145 7.724751347013584 0.999924483965032 1.0726396328047785 0.0324945301683679 0.12426295514779065 0.00017269120021696463 8.633355710688305e-06 0.12856770115821892 0.030272280580049393 0.02433205019188525 1.6138212963503145 0.0727151488397465 KGPSGYGFNLHSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGPSGYGFNLHSDK 14 1 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ; 127.57 5.115e-05 5966600000.0 4384000.0 4390000.0 4653000.0 3668600.0 2754000.0 4725900.0 5431100.0 4238100.0 8356200.0 5241500.0 False True 4360397.031108191 4536118.496188964 5308101.955398978 4133044.3838499663 3104705.575763126 4399209.65657198 5168376.944183211 4554368.542635736 6296926.477343335 4906982.982526083 0.8886105875312181 0.9244210775423964 1.0817445208799974 0.8422781164246675 0.6327117063211912 0.8965202594420443 1.0532697917616507 0.9281402765923548 1.2832582667938495 1.0 22.22640483745585 1.361654242778973 6.498678769784025 1.1403662553232148 0.9065924861969148 0.3396979826886739 0.13140941199123787 0.2434837497764645 12.300888144469972 0.09375686509731081 0.03389002661165616 22.996102872236225 -1.361654242778973 -0.2337737691263 KGPSS(ph)TGASGQAK ddPTM_BT-474_Trastuzumab_2h_R1 5 KGPSSTGASGQAK 13 1 Q9NWH9;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 KGPS(0.036)S(0.955)T(0.009)GASGQAK;KGPS(0.181)S(0.797)T(0.021)GASGQAK;KGPS(0.013)S(0.917)T(0.071)GASGQAK;KGPS(0.046)S(0.929)T(0.025)GASGQAK;KGPS(0.059)S(0.938)T(0.003)GASGQAK 168.08 1.8874000000000006e-05 2046950000.0 1372700.0 1115510.0 1071790.0 1065110.0 1036180.0 1215530.0 1322100.0 1284360.0 1961950.0 1372710.0 True False 1365309.5357213083 1152639.0760099646 1222688.7158343173 1199952.8167918127 1168131.3810799692 1131503.272149843 1258144.9720875374 1380205.4650479308 1478453.7112830891 1285102.4725638425 1.0624129708485026 0.896923864530735 0.9514328560857822 0.9337409602814379 0.9089791717149915 0.8804770796934491 0.97902307321647 1.074004209403125 1.1504558919208219 1.0 20.2934519721405 1.806535266390862 3.3074010006283796 1.085716406023866 0.9358924847459472 0.5200014403360842 0.05786223176567485 0.1651899658848068 3.296644324440164 0.029659763185258852 0.01511006622381302 64.05237924657084 -1.806535266390862 -0.14982392127791877 KGQAVDYEGSR ddPTM_BT-474_Trastuzumab_2h_R1 6 KGQAVDYEGSR 11 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;;;;; 179.98 1.1005e-05 12019110000.0 9015420.0 10327190.0 9421000.0 8661420.0 8869090.0 10396820.0 10304080.0 9652300.0 12319100.0 9896240.0 False True 8966881.980427315 10670924.276231812 10747394.911200048 9757954.883924598 9998516.040285023 9678112.304881755 9805632.284991864 10372603.639386265 9283222.872482741 9264653.490602676 0.9678594012741657 1.151788816177048 1.160042836151546 1.053245530857931 1.079211008854969 1.0446275529568871 1.0583916921380723 1.1195889463008417 1.0020043255690998 1.0 23.143305588022738 KGQGGAGAGDDEEED ddPTM_BT-474_Trastuzumab_2h_R1 8 KGQGGAGAGDDEEED 15 1 P46781 P46781 RPS9 40S ribosomal protein S9 0 ;;;;;;; 187.76 6.706900000000002e-06 10978070000.0 10552400.0 8222100.0 7780500.0 6993340.0 7052660.0 9278080.0 9621020.0 9376850.0 12936370.0 9778580.0 False True 10495587.05088185 8495767.628135592 8875926.77068167 7878696.126956703 7950774.44660914 8636708.167851068 9155614.50673446 10076598.161679506 9748374.951976977 9154502.652536465 1.1464945119627887 0.9280425109475111 0.9695695230611344 0.8606361728207845 0.8685097102906182 0.9434382724721884 1.0001214543531414 1.100725898952856 1.0648721532978054 1.0 23.126050078480628 2.006817881984852 3.9082298632167354 1.0643692118955077 0.9450836422449592 0.25359704967312346 0.07748933309320415 0.2655067138520338 8.98346155970676 0.03476192284684628 0.022071985090717162 101.58226262209112 -2.006817881984852 -0.11928556965054848 KGQLNADEISLRPAQSFLMNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGQLNADEISLRPAQSFLMNK 21 2 D3DQV9;P78344 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 234.04 5.1371e-30 320100000.0 254590.0 234080.0 201520.0 198350.0 206900.0 233820.0 242960.0 242290.0 345550.0 318720.0 False True 253219.3157276084 241871.21129565182 229892.26435675967 223461.08966271646 233247.48860762198 217656.57375307565 231207.0966026682 260370.91012369096 260393.83263277434 298379.0167300797 0.8486498765986491 0.8106173615903222 0.7704706144424536 0.7489169047864526 0.7817154542694362 0.7294634057661388 0.7748771985927659 0.8726180311775351 0.8726948546396357 1.0 18.186786557201966 1.1212745166685527 1.1568727732454656 0.9939022302809587 0.7786577669459813 0.783736667185579 0.03543138663255437 0.2088427137308745 0.5805116016650193 0.03513852693315509 0.011266328473537205 13.221310865155901 -1.1212745166685527 -0.21524446333497738 KGQSEEIQK ddPTM_BT-474_Trastuzumab_2h_R1 5 KGQSEEIQK 9 1 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 ;;;; 159.93 0.00010531 1948060000.0 3003990.0 2420450.0 2435060.0 2207720.0 2075580.0 2598820.0 2886050.0 2591520.0 4012890.0 3021880.0 False True 2987816.8516146615 2501013.2150570787 2777895.282079054 2487217.125637366 2339892.8100735038 2419169.690364248 2746440.7357183537 2784912.381871918 3023967.029471087 2829021.0312383696 1.056131014447348 0.8840560700824096 0.981928112730595 0.8791794398745126 0.8271033634024432 0.8551260890786966 0.970809585857385 0.9844085113262154 1.0689093492342763 1.0 21.4318714712441 1.7545395386726712 2.239142178987414 1.0290234461810335 0.9113678183239304 0.3349410215980446 0.06524222122898908 0.3184821270849244 3.2376139728687705 0.04315680858963288 0.018792861659865066 56.825012335443674 -1.7545395386726712 -0.11765562785710304 KGRPYDYNGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGRPYDYNGPR 11 2 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 143.0 2.1031e-05 2365900000.0 305370.0 363400.0 286350.0 330140.0 335830.0 373730.0 357340.0 311580.0 478690.0 412210.0 False True 303725.92184979614 375495.5493200609 326665.59100118134 371935.6901499832 378595.9598796404 347894.9247657899 340054.0990286369 334831.6817711811 360723.26361737156 385902.4048892639 0.7870537161771547 0.9730324158716002 0.8464979405736516 0.9638076504257896 0.9810665989196928 0.9015101236946673 0.8811919664667978 0.8676589664354704 0.9347525670924036 1.0 18.557876509015653 4.754426938007911 24.09699004859159 0.9185991857097335 0.7870535524371843 0.4029205283955677 0.050280034205281786 1986.6250593697614 3017104.7037299173 0.011939249163576847 0.29291327597237754 56810.28107584928 -4.754426938007911 -0.1315456332725492 KGS(ph)FSALVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGSFSALVGR 10 1 Q13619;A0A087WWN2 Q13619 CUL4A Cullin-4A 1 KGS(1)FSALVGR;KGS(0.793)FS(0.207)ALVGR 175.21 1.7575e-06 2128520000.0 3051560.0 2496230.0 2398980.0 2153390.0 2220720.0 3252550.0 3241890.0 2687320.0 3818840.0 3205250.0 True False 3035130.7400201918 2579315.506547098 2736735.531692039 2426008.9532079487 2503515.5287613235 3027708.874179143 3085067.395477542 2887861.4643344595 2877738.0518343067 3000688.200847416 1.0114782132855553 0.8595746488484477 0.9120359559247659 0.808484184569002 0.8343137844359546 1.009004825401085 1.0281199474861455 0.9623997133453941 0.9590260164390331 1.0 21.51686198674049 2.7294860853183973 24.98455152925979 0.9902128211598055 0.8809863967800265 0.4892407097353588 0.054330124103009345 565.5813197034711 1557189.5345604494 0.01775928450559666 0.01696664170518852 536.3966851554877 -2.7294860853183973 -0.10922642437977892 KGS(ph)GS(ph)EQEGEDEEGGER ddPTM_BT-474_Trastuzumab_2h_R1 2 KGSGSEQEGEDEEGGER 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER 192.01 7.365800000000001e-10 816350000.0 1609990.0 1112650.0 998980.0 884490.0 1046440.0 1449580.0 1279370.0 1367330.0 2063390.0 1320650.0 True False 1601321.992726704 1149683.8826388705 1139627.7007101802 996466.343311197 1179697.9312641853 1349373.9465442817 1217481.9854319887 1469367.1077610552 1554895.1825094507 1236364.9863346494 1.2951854916839833 0.9298903603273696 0.9217566926484563 0.8059645447137254 0.9541664025617062 1.0914042062487233 0.9847270012404334 1.1884573924381086 1.257634436186293 1.0 20.237673272310857 1.7501017417877165 6.685924297804343 1.1658733479204024 0.9863823855087026 0.20017690001403743 0.13562626598246483 0.20133809270026146 26.007102507394585 0.06654761655035997 0.03540283087729833 56.24730798322586 -1.7501017417877165 -0.17949096241169982 KGS(ph)ISS(ph)TQDTPVAVEEDCSLASSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGSISSTQDTPVAVEEDCSLASSK 24 1 Q9BZ71;Q9BZ71-3 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 2 KGS(0.726)IS(0.38)S(0.412)T(0.38)QDT(0.103)PVAVEEDCSLASSK 91.66 0.031561 120680000.0 70483.0 50420.0 42252.0 41066.0 42889.0 65660.0 50917.0 54988.0 118570.0 59549.0 True False 70103.52735939744 52098.19922046634 48200.71433903242 46264.95138940816 48350.65992698063 61121.078747014624 48453.950188171155 59091.48378340629 89350.01225659985 55748.531837536146 1.2574954899923645 0.9345214573953677 0.8646095735668918 0.8298864537676922 0.8672992513576037 1.0963710923389929 0.869152040261382 1.0599648427623578 1.6027330103864623 1.0 15.76664619106497 1.4365876092568348 7.762215414558169 1.3137856214523962 0.9550207540129101 0.3523897193724195 0.18247726984962326 0.18675029519766648 25.28692429987369 0.10553006158563998 0.04263366711971625 27.3267264423578 -1.4365876092568348 -0.3587648674394861 KGS(ph)ISSTQDTPVAVEEDCSLASSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGSISSTQDTPVAVEEDCSLASSK 24 1 Q9BZ71;Q9BZ71-3 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 KGS(0.583)IS(0.139)S(0.139)T(0.139)QDTPVAVEEDCSLASSK;KGS(0.832)IS(0.056)S(0.056)T(0.056)QDTPVAVEEDCSLASSK 260.37 3.1744e-44 755420000.0 525540.0 401550.0 360540.0 323524.0 351100.0 553630.0 473860.0 476940.0 637650.0 463310.0 True False 522710.551032983 414915.34900789894 411300.8981301412 364482.10522833705 395810.5038672592 515358.861204839 450937.58147901116 512531.6846522475 480509.7015722432 433741.15914035286 1.2051209344968823 0.9565966712272235 0.9482634734165261 0.8403216931284944 0.9125500209657995 1.1881714482117565 1.0396467385588688 1.181653329068545 1.107825926699192 1.0 18.726474826261757 2.74387555442258 24.942722296771198 1.1147497646755362 0.9629855663310477 0.2840276531476008 0.10256706042813728 498.5804508550801 2339814.3451520917 0.031873752843039754 0.032902732591389636 554.466809651289 -2.74387555442258 -0.1517641983444885 KGS(ph)ITEYTAAEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 KGS(0.894)IT(0.106)EYTAAEEK;KGS(0.981)IT(0.019)EYTAAEEK;KGS(0.965)IT(0.035)EYTAAEEK;KGS(1)ITEYTAAEEK 239.93 4.8436e-17 3879650000.0 4608720.0 2567830.0 2342490.0 2072720.0 2216190.0 3735200.0 3450210.0 3352560.0 5849770.0 3659480.0 True False 4583907.163596927 2653298.6692639827 2672292.2307119216 2335126.139479229 2498408.6601127344 3476994.4157150327 3283310.1612178674 3602745.051154737 4408172.566402038 3425928.8533615493 1.3380041909215832 0.7744757065402991 0.7800197683877313 0.6816038042319484 0.7292646073666345 1.014905610869116 0.9583707957029688 1.0516111703895117 1.2867087307072074 1.0 21.70806376045179 1.9877629603399598 1.4623080038908969 1.1312953987921004 0.8517946985079123 0.22814458143678162 0.1884631739138623 0.5663520502466274 2.2552932979382785 0.12955392619768125 0.06111820781625351 97.22164393285566 -1.9877629603399598 -0.27950070028418805 KGS(ph)ITEYTAAEEKEDGRR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGSITEYTAAEEKEDGRR 18 3 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 KGS(1)ITEYTAAEEKEDGRR;KGS(1)ITEYTAAEEKEDGRR 177.5 5.168399999999998e-13 658580000.0 497780.0 380900.0 302980.0 337950.0 376360.0 556260.0 546740.0 479030.0 1058270.0 613220.0 True False 495100.00778855715 393578.0262410881 345636.9504506304 380734.43534920557 424287.21513950994 517807.0554951931 520292.09745037364 514777.65106505266 797473.538591482 574083.7745959448 0.8624176987705697 0.685575944936083 0.602067094987833 0.6632036162617145 0.7390684668594482 0.9019712425414553 0.9062999521569284 0.8966943046376231 1.3891239813436023 1.0 19.130901755545455 1.9599179999168945 0.9800184153724769 1.1425080056637595 0.701298238123309 0.6208319313438391 0.13133597671033007 0.35798002763829617 0.6322030150197725 0.1069127872297495 0.049459900573835536 91.18386568667812 -1.9599179999168945 -0.4412097675404505 KGS(ph)PTPGFSTR ddPTM_BT-474_Trastuzumab_2h_R1 6 KGSPTPGFSTR 11 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 KGS(0.803)PT(0.192)PGFS(0.003)T(0.001)R;KGS(0.5)PT(0.5)PGFSTR;KGS(0.499)PT(0.499)PGFS(0.001)TR;KGS(0.878)PT(0.114)PGFS(0.006)T(0.002)R;KGS(0.612)PT(0.385)PGFS(0.003)TR;KGS(0.927)PT(0.073)PGFSTR 153.85 3.4196e-05 16370910000.0 4434910.0 4128340.0 3496550.0 3762010.0 3725050.0 4541270.0 4571390.0 4310610.0 5909420.0 4507660.0 True False 4411032.937324818 4265749.301265775 3988833.8474425795 4238280.080272425 4199413.037398851 4227342.6938997125 4350254.401294334 4632289.607034065 4453122.623171088 4219977.279598112 1.04527409629677 1.0108465090295515 0.945226379944504 1.0043371799091905 0.995126930588304 1.001745368236272 1.0308715220638887 1.097704869035508 1.0552480092014096 1.0 22.00880380079233 2.052831712956327 4.077319333580717 1.062512410147289 0.9986463206959825 0.31330445965726317 0.032404103166262486 0.19693141528813116 6.824630901974113 0.013311857986306328 0.00907345663935096 112.93582089457509 -2.052831712956327 -0.06386608945130645 KGS(ph)QITQQSTNQSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KGSQITQQSTNQSR 14 1 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 KGS(0.997)QIT(0.003)QQSTNQSR;KGS(1)QITQQSTNQSR;KGS(0.998)QIT(0.002)QQSTNQSR 142.88 5.6844e-06 301425000.0 195999.0 138498.0 115429.0 106467.0 120969.0 177557.0 144675.0 142575.0 211499.0 135674.0 True False 194943.76316153604 143107.82220619085 131680.39987314612 119945.71128369258 136373.6851105626 165282.90251421998 137676.5175378295 153214.67048118028 159377.9053914027 127015.16916364481 1.534806940345628 1.1266986703124606 1.0367297129958601 0.9443416252837956 1.0736803014044756 1.3012847489205914 1.0839375992992517 1.2062706485378951 1.2547942615110965 1.0 16.95464127986184 7.999999999963509 0.011906405085778006 8.468583670842819e-10 2.4877798143825185 0.08303702654094491 0.1582410611893478 36114.93723868276 33.223035705520445 2905.86316369969 4136.433045443317 99999999.99159768 -7.999999999963509 2.48777981353566 KGS(ph)SGNASEVSVACLTER ddPTM_BT-474_Trastuzumab_2h_R1 4 KGSSGNASEVSVACLTER 18 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 KGS(0.974)S(0.026)GNASEVSVACLTER;KGS(0.869)S(0.131)GNASEVSVACLTER;KGS(0.998)S(0.002)GNASEVSVACLTER;KGS(0.801)S(0.199)GNASEVSVACLTER 307.77 2.759099999999999e-61 7100300000.0 3224300.0 2695010.0 2475670.0 2261700.0 2352280.0 3369190.0 2869360.0 2669970.0 3891060.0 2907440.0 True False 3206940.7270534104 2784711.77868205 2824222.8170906086 2548030.9881026745 2651828.9149441104 3136285.8255201667 2730558.0947803417 2869216.7192329457 2932160.400532726 2721884.6900153807 1.1782059463493615 1.023082200688786 1.0375982595628066 0.936127455159857 0.9742620341970202 1.1522478659823183 1.0031865437932685 1.0541286814088853 1.077253717355733 1.0 21.376174519095287 KGS(ph)SSQAPASK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGSSSQAPASK 11 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 KGS(0.954)S(0.045)S(0.001)QAPASK;KGS(0.886)S(0.102)S(0.012)QAPASK 132.81 0.00010703 440280000.0 1021760.0 834200.0 630930.0 631450.0 719580.0 513790.0 647310.0 761680.0 1290130.0 763890.0 True False 1016258.9576882075 861965.842715451 719759.4598581296 711391.5052559738 811214.2477151887 478272.9066315661 615997.142335666 818520.429332671 972194.7483563045 715137.886200867 1.4210671498429912 1.205314190938198 1.0064624931029937 0.9947613166395145 1.1343466251308854 0.6687841825474611 0.8613683517847431 1.1445630907362752 1.3594507676289376 1.0 19.44786191011703 4.549818183648721 2.1941782500821057 1.0141946536506434 1.4533696065123343 0.348550398799246 0.17182750163655008 0.5086406509529287 3.7200421256349436 0.04640086753602685 0.37188410358033636 35466.48785415801 -4.549818183648721 0.43917495286169084 KGSFS(ph)ALVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGSFSALVGR 10 1 Q13619;A0A087WWN2 Q13619 CUL4A Cullin-4A 1 KGS(0.292)FS(0.708)ALVGR 62.162 0.092033 892170000.0 876950.0 777610.0 714270.0 602150.0 772610.0 1004800.0 1006300.0 866410.0 1315300.0 939570.0 True False 872228.5986383035 803492.2787748277 814833.0074538634 678382.1282601702 870997.3038817529 935340.5410447804 957621.4245606903 931065.9137408346 991161.9391170256 879605.8381936527 0.991613016609236 0.9134685604461985 0.9263615270303276 0.771234226518195 0.9902131910247683 1.0633632707186025 1.0886938023595312 1.0585035629741382 1.1268251028806984 1.0 19.746497654238013 3.002630493896657 24.995362480649383 1.0672516750735852 0.9005818277222061 0.6420899505178227 0.05871229440364835 50.69306730655889 481683.0653950533 0.016979759926372923 0.02018259331622845 1006.0753163614633 -3.002630493896657 -0.16666984735137913 KGSIT(ph)EYTAAEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 KGS(0.078)IT(0.922)EYTAAEEK 281.49 3.5981e-32 281920000.0 199940.0 121720.0 99326.0 96130.0 97291.0 172570.0 160070.0 168150.0 246350.0 166880.0 True False 198863.54525542233 125771.37661870627 113310.23744293126 108300.04814356891 109680.43216106395 160640.64208608452 152326.80257321853 180698.20684839916 185640.3434208771 156229.5755268441 1.2728930779259056 0.8050420427411047 0.7252803258334513 0.6932109223132357 0.7020465349867007 1.0282345166999605 0.9750189876630947 1.156619713258779 1.188253522387504 1.0 17.253308067653652 2.354454668817133 2.0456952433399693 1.1115719836764224 0.8271391231829527 0.3053647603807752 0.16910553546400936 0.36929749825432356 3.164003641471949 0.07625732014065549 0.05612772301019923 226.18024429836723 -2.354454668817133 -0.2844328604934697 KGSLESPATDVFGSTEEGEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGSLESPATDVFGSTEEGEKR 21 2 O00232-2;O00232 O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 0 ; 206.09 2.4737000000000004e-22 582460000.0 317659.0 277509.0 245728.0 272617.0 281730.0 346380.0 348350.0 341980.0 474760.0 332131.0 False True 315948.7592392326 286745.71930726717 280324.3664939353 307130.2842479496 317606.64555546315 322435.5658908149 331498.9796737712 367500.2841392532 357761.75945806975 310934.11522834474 1.0161276738874574 0.9222073270946354 0.9015555153479052 0.9877664405605616 1.0214596276198842 1.0369899927321378 1.06613897748185 1.1819233276135275 1.1506031082994401 1.0 18.24624939015277 2.6540288799290446 1.1587027787843076 1.1256209416475087 0.9488332019339637 0.5570240471319879 0.05569457838343106 0.3019759605047465 0.8355565427710612 0.028739009186245664 0.024585636271399675 450.84668417021845 -2.6540288799290446 -0.176787739713545 KGSMSNGHGS(ph)PGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGSMSNGHGSPGEK 14 1 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 KGS(0.001)MS(0.001)NGHGS(0.997)PGEK 85.63600000000002 0.0036009 53274000.0 121160.0 108050.0 109940.0 89693.0 100650.0 155500.0 169020.0 141990.0 206970.0 177350.0 True False 120507.68802214158 111646.37893239582 125418.59638438954 101048.12460356962 113467.18090071098 144750.65100762685 160843.8568808982 152586.0148106105 155965.01675591205 166031.371163026 0.7258127616365658 0.6724414678402576 0.7553909571778528 0.6086086255611934 0.6834080818937387 0.871827113115246 0.9687558185794046 0.9190191813858267 0.9393707686890702 1.0 17.341096334956436 2.6193296215466084 3.2638012151478732 0.9458389542537569 0.6866755856519192 0.9033738763218973 0.04160303990794138 0.07271523300212035 1.4581761179914088 0.014112616633110107 0.013165377283339882 416.2263988430227 -2.6193296215466084 -0.25916336860183764 KGSYNPVTHIYTAQDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGSYNPVTHIYTAQDVK 17 1 H3BS10;H3BP20;P06865;H3BU85;H3BTD4;P06865-2 H3BS10 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha 0 139.04 1.0586e-06 369080000.0 269390.0 281030.0 233490.0 219110.0 228360.0 268550.0 287050.0 269790.0 387530.0 305350.0 False True 267939.6341720429 290383.91366377723 266363.3624685384 246849.3035341457 257440.29240423656 249985.77059870216 273164.2948625123 289923.09976586106 292028.42413595424 285862.30157671287 0.9373031445356207 1.0158174479885063 0.9317890501803652 0.8635252083699543 0.9005744758378044 0.874497159016321 0.9555799885323705 1.014205434458305 1.021570254368034 1.0 18.1249608498645 1.8728592111388889 3.582758105112031 1.0128812776973715 0.9215156421959082 0.5127064387692559 0.0396116337143586 0.21895148358860958 4.6832385489242006 0.02236477058828145 0.012184061081299173 74.62068151145101 -1.8728592111388889 -0.09136563550146326 KGTDLWLGVDALGLNIYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGTDLWLGVDALGLNIYEK 19 1 P15311;E7EQR4 P15311 EZR Ezrin 0 88.23899999999998 0.0041503 118160000.0 274160.0 284380.0 270750.0 260680.0 289620.0 319560.0 267050.0 258910.0 378550.0 343930.0 False True 272683.9530220394 293845.41638865945 308869.2465988122 293682.0612718774 326501.3902877692 297469.56936332624 254131.7712699317 278231.1789183405 285261.42481011956 321980.09294671315 0.8468969324360306 0.912619825963247 0.9592805684726889 0.9121124805702847 1.014042164221017 0.9238756552957349 0.7892778989662252 0.8641254071703961 0.8859598188181452 1.0 18.29661196807215 2.4452851194065084 24.989664602795298 0.8678871777776814 0.9328393778030812 0.07705705550625752 0.06284230687268058 312.7308670005782 245475.4620861859 0.021140355785610198 0.017687417402879383 278.79508903122024 -2.4452851194065084 0.06495220002539981 KGTENGVNGTLTSNVADS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGTENGVNGTLTSNVADSPR 20 1 G3XAN4;Q15629-2;Q15629 G3XAN4 TRAM1 Translocating chain-associated membrane protein 1 1 KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR 272.57 1.2142e-44 5688400000.0 2748680.0 3282850.0 3760850.0 2507130.0 3847740.0 5595440.0 4074630.0 3182140.0 4703740.0 4358470.0 True False 2733881.4122870555 3392117.6777252713 4290344.990105788 2824532.400938173 4337726.88165824 5208640.403048969 3877524.580301818 3419607.445379508 3544566.3038868066 4080308.7131260973 0.6700182766789999 0.8313384883876657 1.051475584752697 0.6922349752242591 1.0630879148197891 1.2765309610748568 0.9503017670766097 0.8380756667697338 0.8687005207434817 1.0 21.96024687888544 4.55058321451072 3.18483241188402 0.9592876642084176 0.6713363355692944 0.28400377121784537 0.14743447882124855 0.38476253181013853 6.847817508462784 0.038497782544428295 0.21220349708533984 35529.01885779289 -4.55058321451072 -0.2879513286391232 KGTVEGFEPADNK ddPTM_BT-474_Trastuzumab_2h_R1 3 KGTVEGFEPADNK 13 1 P37108;H0YLA2 P37108 SRP14 Signal recognition particle 14 kDa protein 0 ;; 161.84 6.6484e-05 2336120000.0 2374740.0 2093450.0 1839280.0 1913520.0 1552870.0 2637110.0 2586440.0 2015590.0 3764500.0 2342010.0 False True 2361954.6636984204 2163129.2177327536 2098234.636691646 2155771.435802374 1750618.7899184043 2454812.7927892148 2461324.0160397016 2166003.5607586373 2836789.416715615 2192540.9167043613 1.0772682259671154 0.9865855643798809 0.9569876761276281 0.9832297401513236 0.7984429282851349 1.1196200600347646 1.1225897757654402 0.9878965287518499 1.2938364776241589 1.0 21.064172335495055 KGTVLLADNVICPGAPDFLAHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGTVLLADNVICPGAPDFLAHVR 23 1 P21964-2;P21964 P21964-2 COMT Catechol O-methyltransferase 0 113.31 0.00050547 882810000.0 256640.0 378790.0 341480.0 411960.0 393050.0 369760.0 445120.0 347390.0 517650.0 428500.0 False True 255258.27875538464 391397.7961666094 389557.4158026316 464114.0937607891 443102.5877101288 344199.3615214153 423587.8450764728 373314.00581067655 390082.0936546248 401152.7631426932 0.6363119046112298 0.975682662884678 0.9710949333884132 1.1569510082015815 1.1045731911175038 0.858025652933072 1.055926529729023 0.930603102135148 0.9724028586981701 1.0 18.61379220902111 4.751747157025452 3.585165084653321 1.0048775791379523 0.5883313297691687 0.6516952028750056 0.0806345738647101 0.19344092461771512 4.375581131787203 0.02011012303554017 0.22026466710568748 56460.81684864666 -4.751747157025452 -0.4165462493687836 KGVAINFVTEEDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGVAINFVTEEDKR 14 2 Q14240;Q14240-2 Q14240 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ; 191.78 2.5284000000000003e-07 2724300000.0 2153150.0 1725100.0 1609850.0 1373710.0 1429950.0 2182470.0 2145770.0 1971530.0 3131420.0 2083070.0 False True 2141557.6796374535 1782518.9106550291 1836502.8869329577 1547621.545150341 1612045.6565223231 2031600.9858817712 2041970.9074625762 2118655.5798264863 2359723.49987823 1950126.689194051 1.0981633611314334 0.9140528769398613 0.9417351688530288 0.7936005151490657 0.8266363746801239 1.0417789762784035 1.0470965393055989 1.0864194575492347 1.2100360007141162 1.0 20.895136420445187 2.5570427561559366 4.778703521894129 1.086379385499 0.9098908722488958 0.45118074403266417 0.09026396278498931 0.20655201442829604 8.429395914282303 0.03101604650745485 0.028739367153061836 360.6141436237754 -2.5570427561559366 -0.17648851325010428 KGVAINMVTEEDKR ddPTM_BT-474_Trastuzumab_2h_R1 4 KGVAINMVTEEDKR 14 2 P60842 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 ;;; 223.7 1.9255e-12 15678310000.0 6367340.0 5291510.0 4637520.0 4203580.0 4067580.0 5877290.0 5666670.0 5376270.0 8537390.0 5947330.0 False True 6333058.948917987 5467634.711564656 5290442.505953556 4735752.796997227 4585562.202564472 5471006.775952511 5392551.523318414 5777474.567545893 6433464.629664944 5567766.307634623 1.1374505679654658 0.9820158407272475 0.9501911922379366 0.8505660143284887 0.8235909966761116 0.9826214811585332 0.9685305067355374 1.0376647022026972 1.1554839542822153 1.0 22.408667228446888 1.672089921552546 2.733918501278785 1.082250911067599 0.9471569412762322 0.24699291844228488 0.08711464450063904 0.31333511616715004 5.324885088511319 0.05875761266731442 0.024968742051259887 46.99914112056129 -1.672089921552546 -0.1350939697913669 KGVEGLIDIENPNR ddPTM_BT-474_Trastuzumab_2h_R1 6 KGVEGLIDIENPNR 14 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 ;;;;; 242.01 2.9333e-17 3589900000.0 4040730.0 4490490.0 4326580.0 4207400.0 4088690.0 4817580.0 4887560.0 4543970.0 5922460.0 5167170.0 False True 4018975.1586473063 4639953.245091477 4935724.856692483 4740056.408605561 4609360.435935703 4484552.033963489 4651130.050507643 4883064.115212134 4462949.089898136 4837396.786763201 0.8308136247257243 0.9591839267326597 1.0203266496968664 0.9798775286691394 0.952859696882529 0.9270589599420049 0.9614944267616732 1.0094404760374207 0.9225931397875644 1.0 22.205799448811003 4.730165470244337 4.661914583852809 0.9725122788536997 0.8231433397912133 0.6486552573523601 0.03089894993281359 0.10774916078320869 6.363332285334153 0.007544562560792027 0.05191030389098493 53723.64494735964 -4.730165470244337 -0.14936893906248638 KGVITVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KGVITVK 7 1 P10809;E7EXB4 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 91.853 0.044607 0.0 1243860.0 1370070.0 1437420.0 1188780.0 1426840.0 2266700.0 1343260.0 1277910.0 1920600.0 1620140.0 False True 1237163.1959658386 1415671.951725194 1639796.2417213842 1339279.4261116409 1608539.616456737 2110008.364237862 1278281.3820484863 1373274.1332954941 1447293.8647214787 1516741.2781283616 0.8156718708760148 0.9333641617983222 1.0811311496347424 0.8829979413260868 1.0605233995092778 1.3911458695457832 0.8427814291609894 0.9054109313818478 0.954212749129779 1.0 20.532543584642827 4.591372524323043 3.330652474693464 1.007465838013961 0.8141841176121776 0.14973028765646923 0.14560604357426785 0.5617152325944281 10.297050569542474 0.03738107453348453 0.21855888275663068 39027.66103005532 -4.591372524323043 -0.19328172040178337 KGVNLPGAAVDLPAVSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGVNLPGAAVDLPAVSEK 18 1 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 159.26 6.9749e-11 3097800000.0 654660.0 734330.0 639990.0 560040.0 545110.0 931260.0 873430.0 647570.0 959790.0 928160.0 False True 651135.3832995637 758771.7301381404 730095.0291071977 630941.006577805 614526.5273798972 866884.1881502405 831178.8540733807 695894.9616938318 723262.6150270884 868924.034162245 0.7493582381195639 0.8732313761693729 0.8402288352066398 0.7261175681325396 0.707226987883216 0.9976524460921705 0.9565610126951368 0.8008697358276716 0.8323657610925759 1.0 19.72887052911979 2.7446700286643213 24.991802848995565 0.8999645958959895 0.7848926026651538 0.43960015072357606 0.0766534665658144 608.3435953526388 2488556.612756774 0.025581424700392295 0.026516111280619505 555.4820488133395 -2.7446700286643213 -0.11507199323083572 KGVNLPGAAVDLPAVSEKDIQDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KGVNLPGAAVDLPAVSEKDIQDLK 24 2 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 120.85 7.391199999999999e-05 949010000.0 287630.0 343320.0 414470.0 361510.0 440130.0 443660.0 584730.0 389400.0 699140.0 563160.0 False True 286081.4320386973 354747.19865867746 472823.7733621782 407277.12893354415 496177.9466451064 412990.8284633035 556444.3760144811 418459.00533313473 526846.31499603 527218.6466544666 0.5426238883128729 0.6728654248285245 0.8968267271321717 0.7725013739896592 0.9411236681283317 0.7833388122441982 1.0554337930675821 0.7937105563100241 0.9992937813167282 1.0 19.008041870883304 5.237268289171164 0.6686324165682752 0.9179303214210188 2.0332321689172132e-19 0.6428879033586696 0.09195568714635333 3.406009559827418 0.7173281426585421 0.03409119180504337 2.7597826507159806 172690.4372649713 -5.237268289171164 -0.9179303214210188 KGWESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KGWESR 6 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 0 84.244 0.089907 456850000.0 1061300.0 1194900.0 1053900.0 1091800.0 1181100.0 1328500.0 1343700.0 1315100.0 1624000.0 1434500.0 False True 1055586.0787215156 1234671.524167698 1202279.9593369833 1230021.7680552227 1331506.0840718318 1236663.92195262 1278700.0975675222 1413239.4399424873 1223786.9604850989 1342948.9818627608 0.7860209829098247 0.9193733647685748 0.8952536362694433 0.9159110172220388 0.9914792758731185 0.9208569637822605 0.9521583580888374 1.0523403785467924 0.9112683929270521 1.0 20.356973067677274 6.7002479424649355 0.39290209967890805 0.9888975157490774 2.8788084675116036e-14 0.608386815368732 0.0427289287894584 16.75805102822272 0.5906160817724582 0.031199631124269423 10.74130359528964 5014734.474342201 -6.7002479424649355 -0.9888975157490486 KGWS(ph)MSEQSEESVGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 KGWSMSEQSEESVGGR 16 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 KGWS(0.705)MS(0.295)EQSEESVGGR;KGWS(0.993)MS(0.006)EQS(0.001)EESVGGR;KGWS(0.975)MS(0.025)EQSEESVGGR;KGWS(0.996)MS(0.004)EQSEESVGGR;KGWS(0.988)MS(0.011)EQSEESVGGR 276.14 2.9180999999999995e-35 821320000.0 740320.0 516362.0 425616.0 563730.0 487954.0 581317.0 494830.0 496800.0 784720.0 700614.0 True False 736334.1993772852 533548.79702258 485539.0332794099 635098.1601994601 550092.0495700509 541131.9240630266 470893.18246583105 533873.7386992839 591336.2707092776 655900.2146941773 1.122631435210936 0.8134603176968843 0.7402635681493096 0.9682847268095248 0.838682527076987 0.8250217212008948 0.7179341794931287 0.8139557309768684 0.9015643804675326 1.0 19.323116821725353 3.0278225348889167 24.852591841140036 0.8275461138632519 0.8934132362424688 0.03617265501196332 0.11636962950694844 599.4333422030106 535441.8904147485 0.0332156783590398 0.039699681183537235 1066.1603686730655 -3.0278225348889167 0.06586712237921688 KGYNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KGYNAR 6 1 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ; 107.65 0.049838 742360000.0 1204580.0 1550150.0 1468530.0 1364050.0 1258730.0 944010.0 1427200.0 1298530.0 1648560.0 1515370.0 False True 1198094.6751214196 1601745.805664537 1675286.2593084187 1536738.590140804 1419021.8044227725 878752.8106605131 1358160.8835665477 1395432.9024017348 1242294.4775722362 1418657.7892264717 0.8445269072076114 1.1290572101520655 1.180895260316355 1.0832341681066837 1.0002565912646906 0.619425500169182 0.9573562376216816 0.9836289716934481 0.8756829779573563 1.0 20.436095191613866 2.991932059185708 24.73784761443033 0.8911535006547715 1.069161528241053 0.28697533450740986 0.12868107499577427 431.3440631310875 1322589.8741423632 0.038776437259931164 0.04439129548899017 981.59437086926 -2.991932059185708 0.17800802758628143 KHDNEGSGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 KHDNEGSGSK 10 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;; 138.71 3.727e-05 404797000.0 348537.0 282597.0 249600.0 274160.0 295867.0 590740.0 350652.0 206635.0 422111.0 295813.0 False True 346660.51551810146 292003.07031150616 284741.51043790777 308868.62788974174 333543.9087088992 549903.534252382 333689.6231392779 222055.15297126927 318087.4000476142 276933.9610817489 1.2517804395098 1.0544140890878637 1.028192820142612 1.1153150978061732 1.2044167764979878 1.985684717411941 1.2049429468160286 0.8018343149532325 1.1486038000002359 1.0 18.079182460174454 1.9775704241436898 24.303576824100595 0.9719427732902299 1.2713490135572845 0.1923537006934305 0.26582021065074374 915.7495822948407 992259.2731233144 0.11716978686323254 0.07630905545991594 94.96649820956947 -1.9775704241436898 0.29940624026705454 KHDNEGSGSKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHDNEGSGSKR 11 2 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 124.6 0.00020766 90602000.0 82384.0 77211.0 77650.0 64760.0 68327.0 52745.0 90955.0 62967.0 110607.0 91947.0 False True 81940.45369772291 79780.92145996478 88582.44505410071 72958.60936000761 77028.03844414189 49098.86229837477 86555.15916815813 67665.91727994733 83349.38690786657 86078.86374021285 0.9519230405389677 0.9268352066163961 1.0290847393321048 0.847578675994117 0.8948542661600822 0.5703939406839266 1.00553324483212 0.7860921292381828 0.9682909751157511 1.0 16.393371413680285 3.7164874475838627 23.040672352693097 0.8521925949363043 0.9650364111560618 0.11771062634855978 0.1225535660879117 512.8230983339912 535300.7666581332 0.03094362055060301 0.048000050019841194 5205.799622581866 -3.7164874475838627 0.11284381621975748 KHDS(ph)GAADLER ddPTM_BT-474_Trastuzumab_2h_R1 1 KHDSGAADLER 11 1 Q9NX55;Q9NX55-3;J3QT56 Q9NX55;J3QT56 HYPK Huntingtin-interacting protein K 1 KHDS(1)GAADLER 143.14 2.2861e-05 212430000.0 401650.0 391860.0 343560.0 363110.0 331480.0 456370.0 414880.0 347190.0 617200.0 463660.0 True False 399487.5610275101 404902.82321562764 391930.2617229472 409079.6887694925 373692.01316411013 424822.21607942495 394810.66940449027 373099.0807950979 465099.3300562831 434068.82184070314 0.9203323089031171 0.932807893224409 0.902921937726225 0.9424304814954406 0.8609049864015563 0.9786978347763674 0.909557769503611 0.8595389993986249 1.0714875306731146 1.0 18.727564275301763 1.233746676316029 24.99999354029606 1.0357437994349363 0.9122807772570422 0.6330262009755852 0.037252981637055094 76.09178927261208 395140.71653667383 0.03095708332176294 0.008719833277644796 17.129578488650065 -1.233746676316029 -0.12346302217789418 KHDSGAADLER ddPTM_BT-474_Trastuzumab_2h_R1 1 KHDSGAADLER 11 1 Q9NX55;Q9NX55-3;J3QT56 Q9NX55;J3QT56 HYPK Huntingtin-interacting protein K 0 121.04 0.00027256 398360000.0 548880.0 615120.0 616650.0 610560.0 646360.0 595900.0 715670.0 526460.0 926550.0 760040.0 False True 545924.8910663009 635593.8973521077 703468.9599821148 687856.8333978731 728670.11472413 554706.835597716 681050.3079751056 565747.1185097127 698214.1676339082 711533.5964970178 0.7672510388180792 0.8932732066078508 0.9886658387536353 0.966724321640315 1.024083920016536 0.7795933155210345 0.9571583286130327 0.7951094948923947 0.9812806746881904 1.0 19.440572352559375 KHEAFESDLAAHQDR ddPTM_BT-474_Trastuzumab_2h_R1 6 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;F6THM6;A0A494C060;P12814-3;P12814;P12814-2;P12814-4;H9KV75;P35609-2;P35609;A0A494C1A0;H7C5W8 O43707;P12814-3 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 ;;;;; 226.7 3.3737e-13 16030200000.0 9338420.0 8287780.0 7160860.0 6360590.0 6738180.0 8105100.0 7160640.0 2558580.0 8770140.0 6297390.0 False True 9288142.984315999 8563633.747231197 8169046.844689101 7165840.041834024 7596247.28267813 7544813.514353149 6814252.4868988 2749514.231805986 6608856.5108551625 5895485.178733177 1.575467107918646 1.4525748920755241 1.3856445393429804 1.2154792734758129 1.2884855194073126 1.27976125554002 1.155842527003528 0.46637624359133784 1.1210029896598392 1.0 22.491179116396747 1.9676597130266524 6.341270250502857 0.8023632695784669 1.3505241949406137 0.5911540368086063 0.18528642716820234 0.11993715856685001 15.363034270801542 0.07855478040516936 0.05001104622481648 92.82387898124071 -1.9676597130266524 0.5481609253621468 KHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSHNVNTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSHNVNTR 40 2 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 ; 202.68 1.0349e-31 284000000.0 299770.0 300980.0 334910.0 355560.0 344150.0 389380.0 394440.0 116653.0 441740.0 318860.0 False True 298156.07162757823 310997.937353748 382062.41691009485 400573.85954361205 387975.4625631371 362463.0771019276 375359.4302928738 125358.2392119314 332879.0960127388 298510.08181021956 0.9988140762935224 1.0418339490170645 1.27989786674272 1.3419106554608111 1.2997063958791046 1.2142406544659579 1.2574430585949588 0.4199464167231344 1.1151351873749098 1.0 18.187420131997193 1.7726887060952936 24.999999446688367 0.7864037699267582 1.2107359299953164 0.39905718232251153 0.19837270405061203 28.267870889723998 20716.82165470796 0.08964199568472149 0.049735696431782 59.250047942671515 -1.7726887060952936 0.42433216006855823 KHEAIETDIAAYEER ddPTM_BT-474_Trastuzumab_2h_R1 1 KHEAIETDIAAYEER 15 1 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 104.45 0.00090393 86146000.0 196210.0 156540.0 155420.0 127960.0 122730.0 142810.0 146270.0 90033.0 168010.0 148810.0 False True 195153.6271609803 161750.3392695716 177301.7850651428 144159.72287996576 138358.93802229798 132937.88083857985 139194.36129433784 96751.7196383105 126606.1867186586 139312.81839734936 1.4008303715768728 1.161058552474516 1.2726882357619163 1.034791518385566 0.9931529604667769 0.9542401221071642 0.9991497042097472 0.6944925869086527 0.9087906495262426 1.0 17.087968483183406 3.721669045113238 0.6471504796835124 0.8537235801942842 1.4028488444843839 0.7327674824288584 0.09648993350451934 0.5880295475234947 0.41621812471724123 0.053620128149080064 0.20368319166535628 5268.282380122184 -3.721669045113238 0.5491252642900997 KHEDFDK ddPTM_BT-474_Trastuzumab_2h_R1 3 KHEDFDK 7 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;; 127.02 0.0025287 1150310000.0 2057190.0 1583820.0 1463540.0 1310070.0 1420360.0 1851350.0 1862460.0 1042120.0 2818530.0 1759300.0 False True 2046114.3176152955 1636536.4912605928 1669593.7106822769 1475924.7276754978 1601234.4268667065 1723370.532109129 1772365.6945118767 1119888.2861781348 2123941.0478670364 1647019.9677874898 1.2423130002266614 0.9936348819492579 1.0137058100911256 0.8961182964030294 0.9722009800632296 1.0463567933691806 1.0761045580356678 0.6799482143999306 1.2895660583400301 1.0 20.651426615131225 4.791897959625493 2.829338823560758 0.972124260730772 1.3131339042437051 0.18987010884734046 0.14522234332785414 0.819176464014563 8.010466632197739 0.034816741651992694 0.6817400597618987 61929.555037653554 -4.791897959625493 0.34100964351293317 KHEDFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KHEDFEK 7 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 139.88 0.0017282 526570000.0 1603350.0 1466340.0 1266590.0 1159100.0 1224060.0 1627040.0 1507510.0 1105340.0 2141290.0 1458960.0 False True 1594717.7417489316 1515146.240478753 1444914.862602362 1305841.9411548004 1379936.785427963 1514566.554440187 1434585.9820525553 1187826.0836027898 1613597.771315971 1365847.9237215004 1.1675661060448324 1.1093081551498518 1.0578885375946023 0.9560668640157223 1.0103151027737223 1.1088837403753382 1.0503262897261398 0.8696620340911323 1.181389042873405 1.0 20.38136542930168 4.303453864715424 2.2038721755222017 1.0151569123249087 1.1613807723386804 0.24217999525546174 0.07956605253791217 0.4408463660688354 3.996293838513767 0.021052901083700844 0.08892821133347378 20111.935369212813 -4.303453864715424 0.14622386001377174 KHEDSAIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHEDSAIPR 9 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 ; 123.63 0.00035864 386600000.0 231350.0 244850.0 248690.0 235110.0 249290.0 240520.0 268370.0 204520.0 341520.0 280850.0 False True 230104.43730540155 252999.6842350492 283703.3903477696 264874.9018936285 281035.603842407 223893.41852317937 255387.91782704202 219782.3209315171 257356.97213354104 262925.9125522178 0.8751683509311856 0.9622470519515751 1.0790240779003681 1.007412694026587 1.0688775446832104 0.8515456553895712 0.9713303468189782 0.8359097009423435 0.9788193549862807 1.0 18.004296807599857 2.736759876628994 24.99992329064932 0.9144213876235067 1.0014929423290861 0.18120713419884737 0.07274051373122442 230.73857758544557 3203358.037692497 0.022834176857690534 0.022534833546221298 545.4561925215723 -2.736759876628994 0.08707155470557948 KHEEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 KHEEEEAK 8 1 P25789;H0YN18;P25789-2 P25789 PSMA4 Proteasome subunit alpha type-4 0 ;;; 122.33 0.00090563 1207078000.0 2747700.0 1920300.0 1616360.0 1385810.0 1462330.0 1488690.0 2117150.0 1423150.0 3493410.0 2169380.0 False True 2732906.6884981683 1984216.0246541377 1843929.4383470223 1561253.4039096981 1648549.057591027 1385780.364299319 2014735.3662015933 1529352.6796092726 2632505.914795723 2030928.3111003418 1.345644094654183 0.976999539476164 0.9079244344907453 0.7687388054893098 0.8117219345363577 0.6823383950704363 0.992026825954297 0.7530313459369133 1.2962081922869304 1.0 20.95370788476061 4.778360372548037 2.144917380367971 0.8753912233268724 1.5034483281242281 0.38333962915583997 0.16573923932986037 0.7109416145756854 3.3770163715424624 0.03974963510470864 0.8899004894815984 60028.89825170833 -4.778360372548037 0.6280571047973558 KHEEEEAKAER ddPTM_BT-474_Trastuzumab_2h_R1 2 KHEEEEAKAER 11 2 P25789;H0YN18;P25789-2 P25789 PSMA4 Proteasome subunit alpha type-4 0 ; 222.79 4.4530000000000005e-12 1199860000.0 775340.0 646430.0 602900.0 686540.0 627940.0 773690.0 875280.0 526730.0 1380370.0 880980.0 False True 771165.6555883731 667946.0317748135 687783.0794992568 773455.893607467 707904.4369080228 720206.6313703583 832939.3625056957 566037.2672807446 1040196.3095103547 824755.1021550747 0.9350238071559993 0.8098719608153729 0.8339240068986397 0.9378006775422625 0.8583207731098328 0.8732369517793432 1.009923261255657 0.68630950666652 1.2612183990039405 1.0 19.653606272151002 1.2321475835544686 24.99999986570556 1.1306091783902938 0.8653355092063906 0.5209919109649506 0.10067562780247986 118.71707451537289 462774.513264237 0.08262586323253134 0.022634155707476372 17.066622547407256 -1.2321475835544686 -0.26527366918390327 KHEENEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KHEENEAK 8 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 ;; 108.98 0.0024063 65954000.0 230116.0 174517.0 146881.0 139726.0 150618.0 140677.0 190256.0 134302.0 306157.0 225918.0 False True 228877.08102429102 180325.69284724578 167560.56808746158 157415.29727357035 169798.30951717155 130952.330108038 181052.5904315002 144324.29721173775 230708.70964361826 211499.71982186945 1.0821625731563957 0.852604878148873 0.792249598385215 0.7442813513235365 0.8028299501303363 0.6191607734437163 0.8560417507124235 0.6823852879488039 1.090822767226014 1.0 17.690296226614816 4.739262289043161 2.6875977315868083 0.7976063336444275 1.138651419259159 0.23254417078083434 0.1335805894243671 0.5596322866262905 5.37043638854406 0.03061325022973009 0.426607460378536 54860.819287992366 -4.739262289043161 0.34104508561473157 KHEETECPLR ddPTM_BT-474_Trastuzumab_2h_R1 5 KHEETECPLR 10 1 O14545;F8VNX8;F8VVF3;O14545-2;S4R2Z9 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 0 ;;;; 141.93 2.3787e-05 639500000.0 526173.0 586287.0 523296.0 501182.0 487758.0 607655.0 541627.0 317262.0 669536.0 537032.0 False True 523340.14303131594 605801.2083770249 596971.5282296294 564631.589812652 549871.0901318335 565649.2401160097 515426.4327939309 340937.70146379253 504537.8241227528 502758.1579837734 1.0409381423666662 1.2049555014810465 1.1873930213756905 1.1230679817847442 1.0937089361950854 1.1250921166241248 1.0251975519620835 0.6781345982153041 1.0035398055918505 1.0 18.93950506098682 1.9746863703611364 7.303190067397243 0.8558046211851168 1.1290320799899873 0.5363033918567687 0.09615276224104856 0.12444481349879317 27.164495405677783 0.03864132066877721 0.025113388693120367 94.33793604035556 -1.9746863703611364 0.27322745880487054 KHELLNSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KHELLNSTR 9 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 70.363 0.03416 379870000.0 372820.0 513690.0 544960.0 403860.0 294410.0 424680.0 457810.0 172020.0 764980.0 384690.0 False True 370812.7785441961 530787.8611178382 621685.6311227663 454988.6345913014 331901.3683952147 395322.87118918885 435663.98129596474 184857.00589986102 576460.9292068294 360138.7548503209 1.0296386421903176 1.473842661944121 1.7262391862857087 1.263370377288058 0.9215930358096505 1.0976960015133361 1.2097114665624733 0.5132938441370754 1.6006634149840808 1.0 18.458193332009774 3.4249593317182847 5.270481518381063 1.0128524295079726 1.4288774881911497 0.21178591618956932 0.30008063421889214 0.24614681291994825 14.802016390814572 0.0831509385851459 0.11486535395612073 2660.47591537126 -3.4249593317182847 0.4160250586831771 KHFTILDAPGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KHFTILDAPGHK 12 1 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1;H3BSV8 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ; 182.71 6.7214e-06 727060000.0 434300.0 550590.0 506430.0 486390.0 491800.0 655150.0 640050.0 240140.0 763540.0 560750.0 False True 431961.77705526655 568916.0553113171 577730.9420315288 547966.9241293103 554427.8148730226 609861.0225572126 609088.336271558 258060.46620621198 575375.7979118179 524962.4549177714 0.8228431824194509 1.0837271313058578 1.1005185925572962 1.0438211704399742 1.0561285091518908 1.1617231229474105 1.1602512342848668 0.4915789001455996 1.0960322829219151 1.0 19.00185471999488 KHGGPKDEER ddPTM_BT-474_Trastuzumab_2h_R1 9 KHGGPKDEER 10 2 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;;;;;;; 172.34 2.2509e-06 23264609000.0 11992519.0 11949237.0 10765846.0 10590619.0 10418478.0 12822616.0 14288328.0 4385985.0 18657450.0 10236986.0 False True 11927952.610198116 12346960.130078694 12281583.53838906 11931390.279519381 11745209.418142853 11936218.737111323 13597146.98792646 4713289.472280557 14059571.444521362 9583652.789155353 1.2446144359169105 1.2883355023097496 1.2815138244873214 1.2449731372802524 1.2255462167236975 1.2454769595386512 1.4187854346426958 0.49180511606326244 1.4670368129812528 1.0 23.192144210293357 KHGLAHDEMKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 9 KHGLAHDEMKSPR 13 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR 174.52 1.7576e-05 7383868000.0 10732360.0 8914080.0 7238413.0 8059764.0 8107708.0 10687820.0 8768030.0 814190.2999999999 11989270.0 3746675.0 True False 10674578.166237304 9210779.764124855 8257518.6329863295 9080129.296013784 9140176.5556497 9948996.159822088 8343886.891772705 874949.3145605706 9034675.056487186 3507558.993810147 3.0433068082603674 2.625979999304156 2.3542066284725425 2.588731739662156 2.6058511266038673 2.8364444268447833 2.378830094232859 0.2494467851017216 2.575772801663733 1.0 21.742035938133455 1.9246903404558453 8.514217490570447 1.2155277311986492 2.6481772213879418 0.5581601032168546 0.5580579756824018 0.2382247994734248 25.087749078198993 0.22012470178587276 0.138703320920323 84.07954260558742 -1.9246903404558453 1.4326494901892926 KHGTDLWLDSCVVPPLS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KHGTDLWLDSCVVPPLSPPPK 21 1 Q9NP61 Q9NP61 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 1 KHGTDLWLDSCVVPPLS(1)PPPK;KHGT(0.001)DLWLDS(0.001)CVVPPLS(0.999)PPPK 50.425 0.06388200000000001 959940000.0 646530.0 650390.0 573490.0 484300.0 506340.0 668620.0 601670.0 374050.0 683370.0 580750.0 True False 643049.154316235 672037.837980942 654232.407135561 545612.3303436026 570819.3976876903 622399.8731621827 572564.9234973965 401963.5103874136 514962.6201888556 543686.0377949097 1.182758264170851 1.236077057830294 1.203327585510577 1.0035430237578025 1.0499063025470152 1.1447781070239027 1.0531168426167687 0.739330206119884 0.9471691093584986 1.0 19.052414253717416 2.716487071070515 0.6705638770446747 0.8798736810879586 1.206436095299286 0.5095300552370565 0.09808186251149358 0.5823331007114526 0.5601938335305932 0.08067757312842405 0.08163326140533635 520.5795109394904 -2.716487071070515 0.3265624142113275 KHIKEEPLS(ph)EEEPCTSTAIASPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KHIKEEPLSEEEPCTSTAIASPEK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 KHIKEEPLS(0.887)EEEPCT(0.087)S(0.013)T(0.013)AIASPEK;KHIKEEPLS(1)EEEPCTSTAIASPEK;KHIKEEPLS(1)EEEPCTSTAIASPEK;KHIKEEPLS(0.97)EEEPCT(0.01)S(0.016)T(0.005)AIASPEK 132.76 2.4469e-05 1025540000.0 1554630.0 1351740.0 1278270.0 1248300.0 1317470.0 1939900.0 1605790.0 748710.0 2782950.0 1454150.0 True False 1546260.0448156302 1396731.8487559147 1458239.305077984 1406334.6520089179 1485241.9952435177 1805799.2790334101 1528111.802986494 804582.5420723453 2097129.2621194588 1361344.9020395516 1.1358326919938075 1.0259941082258777 1.0711754992384857 1.0330480173701486 1.0910108033741814 1.3264818315534748 1.1225015796489883 0.5910203511739962 1.540483428540088 1.0 20.37660119489036 KHISQISVAEDDDESLLGHLMIVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KHISQISVAEDDDESLLGHLMIVGK 25 1 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 96.903 0.003585 68564000.0 38081.0 73628.0 83711.0 98198.0 91962.0 102840.0 101270.0 26479.0 95034.0 79833.0 False True 37875.97612719685 76078.66347093415 95496.78117094445 110629.85673153214 103672.81559852157 95730.91285932047 96371.18321103153 28454.997437637554 71614.1440903576 74737.98959152997 0.5067834488752334 1.017938318741666 1.2777542143275293 1.4802359193251537 1.3871501784451368 1.2808869141720882 1.2894537803028252 0.3807300355970821 0.9582027089804621 1.0 16.18955413613218 1.7590629126271515 24.999999999999996 0.7232663322640692 1.1986379283264579 0.2624967109003653 0.2994209273584717 11.016699704131986 13445.309129852156 0.14258831047566917 0.07907403452882057 57.419963570526974 -1.7590629126271515 0.47537159606238866 KHLEINPDHPIVETLR ddPTM_BT-474_Trastuzumab_2h_R1 8 KHLEINPDHPIVETLR 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;; 250.52 2.8780999999999997e-21 12833520000.0 4086500.0 5274890.0 4720460.0 5307350.0 5004740.0 5319810.0 5594470.0 1371794.0 6947060.0 4209890.0 False True 4064498.7380528324 5450461.524911662 5385059.737026151 5979259.965825147 5642063.97358196 4952064.056185739 5323844.1131492 1474164.2341087875 5235050.1488347305 3941211.215931834 1.0312816328195313 1.3829407322497407 1.366346395051792 1.517112288134867 1.431555850337239 1.2564827878718257 1.3508142095070297 0.3740383738252013 1.3282845962867253 1.0 21.91020763725007 1.7880567017882127 24.99999999996491 0.8343661143517924 1.344770981762086 0.37658056561069575 0.25070982904609485 95.72649101083562 48364.89756684358 0.10864150935975858 0.06117314425312441 61.38421435884368 -1.7880567017882127 0.5104048674102937 KHLEINPDHSIIETLR ddPTM_BT-474_Trastuzumab_2h_R1 5 KHLEINPDHSIIETLR 16 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;; 256.98 4.776e-27 7404097000.0 2801008.0 3753344.0 3450721.0 3641660.0 3627039.0 3631409.0 3838464.0 1128476.2 4364610.0 2722916.0 False True 2785927.684149243 3878271.7860956346 3936552.522595388 4102693.782612184 4088920.9175055586 3380378.243247302 3652782.83196355 1212688.8243300335 3289010.348277625 2549137.1696743285 1.0928904561480175 1.5214056866901018 1.5442686134847392 1.6094441018787287 1.6040411501386365 1.3260872280479008 1.4329487151255262 0.475725213518017 1.2902445531002245 1.0 21.281577576534605 1.7703422598289285 24.99999999999965 0.8728095369948964 1.461481207133274 0.5066823264660911 0.235747991565962 19.27302387599457 15168.203794543926 0.10415728155339102 0.057777130882967424 58.93078955707016 -1.7703422598289285 0.5886716701383775 KHNGVGGS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KHNGVGGSPPK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 KHNGVGGS(1)PPK 57.475 0.068862 150080000.0 145270.0 99792.0 91015.0 84162.0 80445.0 128140.0 129480.0 41750.0 183850.0 96048.0 True False 144487.88246101417 103113.51639446213 103829.12088343824 94816.90057067583 90689.19391512871 119281.98340911457 123216.55773836629 44865.59700220432 138542.63096378426 89918.13440917009 1.606882565017707 1.1467488407315793 1.1547072408215964 1.0544802913638538 1.0085751279319246 1.3265620354880259 1.3703193304442083 0.49896049664514397 1.5407640724989877 1.0 16.45632448287342 5.029651216864906 1.692290836208375 1.0821300322415677 2.2033834632347453 0.21977363669495287 0.26680127446519764 3.367970622544058 5.042915071647221 0.06973477515224498 7.757620952448003 107065.91104910184 -5.029651216864906 1.1212534309931776 KHNMCGETEEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 KHNMCGETEEEK 12 1 P21266;A0A0A0MTN3 P21266 GSTM3 Glutathione S-transferase Mu 3 0 ;;;; 167.3 3.2193e-05 573574000.0 923420.0 724796.0 680549.0 607456.0 638247.0 1037464.0 1013475.0 390220.0 1349135.0 749654.0 False True 918448.409321606 748920.3967115653 776364.3837620512 684359.8673161337 719523.9722636472 965746.5556075652 964449.3423995271 419340.1978970101 1016658.7567327976 701810.4399089199 1.3086844496653558 1.067126326602892 1.1062308846001305 0.9751349202000317 1.0252397675318512 1.3760789248630994 1.3742305436845486 0.5975120546104039 1.4486230168715335 1.0 19.42072188340915 2.7326416422422306 0.016156277074423107 1.4703207121823407e-06 2.210660984452425 0.002625076870461207 0.24330408879441714 4806.759763766087 30.53147407110475 1995.303432569791 2177.6193537599233 540.308303973256 -2.7326416422422306 2.210659514131713 KHNVGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KHNVGVK 7 1 O75874;C9J4N6;C9JLU6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 73.039 0.032442 676380000.0 1499000.0 1549700.0 1346100.0 1307500.0 1349000.0 1302000.0 1363200.0 848250.0 2214300.0 1379100.0 False True 1490929.5505545565 1601280.8276865676 1535619.1794890529 1473029.3659390046 1520787.153850565 1211995.8045783276 1297256.8080702892 911550.7223262237 1668615.4350998495 1291084.6572930885 1.154788372809314 1.240260132161931 1.1894023918684464 1.1409239182095035 1.1779143569400592 0.9387423185087026 1.0047805933889271 0.7060348190004809 1.2924136505489103 1.0 20.30015217155921 2.7411116538721347 22.68100417685795 0.949898439322512 1.1822474719782612 0.310956598992462 0.13723333773050453 62.532752467531175 555971.9114004301 0.04230391119195215 0.042952218263954595 550.9493231607901 -2.7411116538721347 0.23234903265574924 KHPAAQLEYVICDSQSSVVLASQEYLELLSPVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHPAAQLEYVICDSQSSVVLASQEYLELLSPVVR 34 1 F5GX20;F5H2G6;A0A3B3ISK9;Q4G176 F5GX20 ACSF3 Acyl-CoA synthetase family member 3, mitochondrial 0 ; 167.56 1.3052000000000001e-14 134155000.0 129295.0 146569.0 167888.0 138630.0 174703.0 282220.0 168970.0 134203.0 191576.0 183582.0 False True 128598.89008602481 151447.4605621685 191525.17109134406 156180.54378594604 196950.39150419223 262710.7956744208 160796.2755719165 144217.9093290257 144364.66178688002 171865.63958754248 0.7482524744017895 0.8811968519456522 1.1143889584385929 0.9087362905160168 1.1459555963417134 1.5285824223206925 0.9355929198984093 0.8391317175156818 0.8399855965004895 1.0 17.390921615810953 -4.688905668102484 4.357797713821802 1.2456744144801462 0.9975144023194179 0.0 0.2133099561384458 0.0 0.0 0.0 0.05009043941586162 2.0468891875552555e-05 4.688905668102484 -0.24816001216072825 KHPDASVNFSEFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 KHPDASVNFSEFSK 14 1 P09429;Q5T7C4 P09429 HMGB1 High mobility group protein B1 0 ;; 101.62 0.00085267 1247300000.0 1286130.0 1280850.0 1208990.0 1115700.0 1101540.0 1459260.0 1426960.0 1373380.0 1937660.0 1547120.0 False True 1279205.618982477 1323482.3179598262 1379205.283270538 1256947.5056047011 1241814.589660896 1358384.7909285484 1357932.493283437 1475868.5894823314 1460149.6563137646 1448381.47704393 0.8831966158482419 0.9137663929954307 0.952238968207066 0.8678290391907417 0.8573808829669473 0.9378639622628563 0.9375516842806534 1.0189778127337703 1.0081250550744774 1.0 20.46601020113509 1.994256898636115 1.9125788156273058 1.0122164901842143 0.8993687562164411 0.7509050491885537 0.027579202409305944 0.1713565244757118 1.1679039777363196 0.017174679102213056 0.008749145521170416 98.68630730799751 -1.994256898636115 -0.11284773396777326 KHPDSSVNFAEFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 KHPDSSVNFAEFSK 14 1 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ;; 185.02 7.9565e-07 16852900000.0 2866490.0 2835030.0 2803400.0 2584870.0 2329510.0 3358880.0 3512390.0 3127180.0 4171890.0 3480670.0 False True 2851057.1363369767 2929392.2597381775 3198094.352410385 2912114.276967311 2626159.2904124768 3126688.53155304 3342482.2770671993 3360546.051098284 3143783.609961934 3258530.660648488 0.8749517599351301 0.898991774149884 0.9814528956354593 0.8936893895568759 0.805933582926557 0.9595393928043598 1.025763641702854 1.0313071752498084 0.9647856464656626 1.0 21.63579013916184 2.4887410023957046 8.907900584458003 1.0090100292333963 0.8951947776177926 0.6106825163080697 0.04318624590631137 0.12845257582298758 81.17603414914804 0.015208795346796856 0.01357629712352146 308.134979603938 -2.4887410023957046 -0.11381525161560369 KHPEVDVLINFASLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KHPEVDVLINFASLR 15 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ;; 199.58 4.7715e-09 1078900000.0 1698120.0 1880670.0 1865660.0 1734650.0 1533690.0 1947750.0 1992740.0 1684720.0 2593360.0 2073210.0 False True 1688977.510598868 1943266.964060977 2128328.7113925773 1954256.5121423297 1728996.3306071716 1813106.6270103224 1896343.553193949 1810442.3612348177 1954261.177243619 1940895.962835621 0.8702050717501086 1.0012216013999493 1.0965702191904814 1.00688370194103 0.8908238070015525 0.9341596158309278 0.9770454416440839 0.9327869169194352 1.0068861055223546 1.0 20.888291357172886 4.74624403706913 24.226534396994282 0.9783854422775892 0.8702049901148929 0.2845677726619583 0.053183405004041326 919.9277058831311 2900507.8362352406 0.013872198739964975 0.1460306945461756 55749.89285668069 -4.74624403706913 -0.10818045216269623 KHPS(ph)SPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KHPSSPAR 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 KHPS(0.63)S(0.37)PAR;KHPS(0.662)S(0.338)PAR;KHPS(0.5)S(0.5)PAR 82.417 0.012451 261719000.0 263164.0 321084.0 372566.0 235531.0 118286.1 202698.0 387848.0 185165.0 570045.0 345881.0 True False 261747.1542642689 331771.08684062306 425020.0543982755 265349.2004504624 133349.13369835663 188685.96435976826 369086.31051675894 198982.95254881826 429565.0479616552 323806.5784563776 0.8083441525865442 1.0245964996208945 1.3125738717983864 0.8194682199336774 0.41181724699370514 0.582711954955503 1.139835738595043 0.6145117665533306 1.3266100090042645 1.0 18.304772770176072 3.52390493417187 24.820582212887672 0.8036036986532855 1.0494320120660394 0.09108820896736347 0.28128072000547133 763.6416018348721 405139.68787933665 0.0742551038308797 0.11503139701930454 3341.2189368745408 -3.52390493417187 0.2458283134127539 KHPSS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHPSSPAR 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 KHPS(0.174)S(0.826)PAR;KHPS(0.266)S(0.734)PAR 94.465 0.0063333 207340000.0 258810.0 314370.0 382230.0 224501.0 131075.0 206224.0 401970.0 192265.0 579920.0 357220.0 True False 257416.59571649422 324833.615409322 436044.6615972817 252922.80358139396 147766.62430760777 191968.22027907916 382525.1754254797 206612.79060188797 437006.48652987636 334421.9137685712 0.7697360284070179 0.9713287378473513 1.3038758635268026 0.756298535377748 0.4418568826499395 0.5740300272664735 1.1438400406086942 0.6178207291310146 1.3067519457839607 1.0 18.351309860878942 2.225700864224732 24.99999896542656 0.9515506115861676 0.8147607857604292 0.1103059446749256 0.2725925731579844 850.1621326619377 1652746.0445288564 0.1093137906583328 0.08124132857389546 168.15154585067296 -2.225700864224732 -0.1367898258257384 KHQLLEADISAHEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KHQLLEADISAHEDR 15 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 124.25 3.9758e-05 220680000.0 102000.0 108100.0 103040.0 101770.0 86198.0 106150.0 87416.0 57849.0 112940.0 91977.0 False True 101450.84333326532 111698.04315217007 117547.13636026457 114654.07156528675 97174.80436442618 98812.10035022245 83187.35411845107 62165.98613126988 85107.45031846482 86106.9491145286 1.178195771381102 1.2972012630897354 1.3651294996402463 1.3315309942382045 1.1285361444542241 1.1475508233231566 0.9660933870483059 0.7219624753930665 0.9883923561763364 1.0 16.393842052113666 2.4439447079775136 1.5424491394816946 0.8664478487739588 1.2848927438153888 0.7346409723168996 0.09688361376111464 0.17954505608367735 0.865596663766321 0.048213070649781704 0.035659127784562566 277.93593922405876 -2.4439447079775136 0.41844489504143 KHS(ph)EEAEFT(ph)PPLKCSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KHSEEAEFTPPLKCSPK 17 2 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 2 KHS(1)EEAEFT(0.851)PPLKCS(0.149)PK 143.31 1.0467e-06 346230000.0 313600.0 197140.0 189090.0 177580.0 191080.0 283920.0 246970.0 186800.0 509580.0 227360.0 True False 311911.6124442358 203701.68572635352 215712.22840025634 200061.60979231255 215412.9053801083 264293.2786757903 235023.1175829806 200739.96455117982 384000.8370221652 212849.6901473108 1.4654078764613914 0.9570212932204598 1.013448637162518 0.9399196665677655 1.0120423723944514 1.2416897506069942 1.1041741118830093 0.9431066797055238 1.8040939442120056 1.0 17.699475464376665 1.2796291448953108 24.99987624950207 1.4020546114887373 1.0707960190913033 0.22115796223049922 0.23715826178425664 165.49224205931915 100740.8587710609 0.14500527222091128 0.05294949370103516 19.038342911118765 -1.2796291448953108 -0.33125859239743405 KHS(ph)EEAEFTPPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KHSEEAEFTPPLK 13 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 KHS(1)EEAEFTPPLK 166.76 2.0258e-05 673550000.0 758150.0 693890.0 678980.0 584580.0 633380.0 802700.0 702240.0 516710.0 1084000.0 641760.0 True False 754068.204638384 716985.709184637 774574.482200043 658587.7680616615 714037.1886626176 747211.2383525525 668269.9683826885 555269.5240002159 816862.7248558166 600802.3273616213 1.2551020032658968 1.1933803790894524 1.2892334914905028 1.0961804541500375 1.1884727407735898 1.2436889877472264 1.1122959049066043 0.9242133372529375 1.3596197745155356 1.0 19.196530875948394 7.999999727017376 0.0847178735249192 0.8898407923867901 1.898301703160703 0.18847448013838441 0.11454573955667881 251.22781558275216 1.5401458756364037 2.582002421858588 29.53201786431331 99999937.14344767 -7.999999727017376 1.0084609107739129 KHS(ph)PDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KHSPDLR 7 1 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 KHS(1)PDLR;KHS(1)PDLR;KHS(1)PDLR 105.98 0.0047813000000000005 362591000.0 726540.0 838710.0 696320.0 690340.0 721070.0 800480.0 850930.0 597580.0 1127590.0 855320.0 True False 722628.3893661817 866625.9553390983 794355.8034780606 777736.9732178455 812893.9903832673 745144.7017272352 809767.2650317283 642174.454049755 849710.5534318915 800732.745323706 0.9024588960378414 1.0822911394597137 0.992036117065417 0.9712815889694082 1.015187645479198 0.9305785308255395 1.011282815347298 0.8019835054830288 1.061166236043445 1.0 19.610961279701364 2.5934422375220696 2.0453140378234034 0.9375939383669891 0.9965657239558067 0.0 0.07803625364526381 0.7832927079128089 6.520207484787106 0.029453402298805584 0.026285881768001496 392.1409869282786 -2.5934422375220696 0.05897178558881755 KHS(ph)PS(ph)PPPPTPTESR ddPTM_BT-474_Trastuzumab_2h_R1 7 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(0.999)PS(1)PPPPT(0.001)PTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR 137.12 6.530300000000001e-05 17621810000.0 4748710.0 4158010.0 3005490.0 3564670.0 3804170.0 4590210.0 4669240.0 3471150.0 5877860.0 4336330.0 True False 4723143.472991283 4296406.849279874 3428636.8678126154 4015956.8565061544 4288608.500417861 4272899.586892082 4443371.022971038 3730184.8391425502 4429340.162288755 4059581.70688111 1.1634556991390064 1.058337326231749 0.8445788545162117 0.9892538558095751 1.0564163527361807 1.0525467635370886 1.094539128363741 0.9188594068250375 1.0910828952600937 1.0 21.952899651291897 0.7285923175132707 0.0041517080053495746 4.1175438024588095e-05 2.020696576237473 0.00650741269267785 0.08741472024688311 85159.58772862708 184.33751870769953 45207.76165540852 44500.53933626175 5.352939285359281 -0.7285923175132707 2.0206554007994484 KHS(ph)PSPPPPTPTESR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 KHS(0.752)PS(0.248)PPPPTPTESR;KHS(0.997)PS(0.003)PPPPTPTESR 113.54 0.00041452 535290000.0 153634.0 150483.0 133486.0 136538.0 156920.0 189256.0 167686.0 116260.0 207589.0 152950.0 True False 152806.85161434216 155491.73568610547 152279.66851888868 153823.69680044346 176902.8318622908 176173.17818070357 159574.38755727312 124935.91155631807 156431.47250008705 143188.60005291688 1.0671719086426625 1.0859225918029916 1.0634901693473648 1.0742733481827202 1.2354533237765748 1.2303575711725436 1.1144350004001764 0.8725269435565867 1.0924855221873537 1.0 17.12755711157945 1.8726760150325124 8.825876810465191 0.9772736021378695 1.1278763125691262 0.3942872798496295 0.0770195618433785 0.30529896994668976 20.42563868659054 0.03435589342027673 0.021645370498167556 74.58921130847679 -1.8726760150325124 0.15060271043125673 KHS(ph)QTDLVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 KHSQTDLVSR 10 1 E9PN66;E9PNB3;E9PKN9;E9PS55;E9PMY0;E9PMW4;E9PQ46;E9PIN5;E9PIK4;U3KQ32;E9PKZ4;E9PPM1;O14683 E9PN66 TP53I11 Tumor protein p53-inducible protein 11 1 KHS(0.906)QT(0.094)DLVSR;KHS(0.984)QT(0.016)DLVSR;KHS(1)QTDLVSR;KHS(0.99)QT(0.01)DLVSR 171.99 2.3597e-06 5868130000.0 5421810.0 4334530.0 4268450.0 4042290.0 4765370.0 6258160.0 3751150.0 1804720.0 5610700.0 4162570.0 True False 5392619.577379719 4478802.210771289 4869410.6579675 4554043.499534667 5372211.6229391135 5825548.129324052 3569692.5437154216 1939397.3705824697 4228018.16452817 3896911.2188445237 1.383818946477998 1.1493210800166245 1.2495564780691446 1.1686290099482917 1.3785819900028495 1.4949142544364635 0.9160312727816966 0.497675533690378 1.084966509907255 1.0 21.89389963308882 2.085349600474101 6.081567827272781 0.7815859838633328 1.2897022447713664 0.5724650623135717 0.17787298634449533 0.12658436964173567 7.1934665334289045 0.06713080303836341 0.04916396416895627 121.7165406090093 -2.085349600474101 0.5081162609080336 KHS(ph)VNEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KHSVNEK 7 1 E9PNQ0;E9PR18;Q96PZ2 E9PNQ0 FAM111A Protein FAM111A 1 KHS(1)VNEK;KHS(1)VNEK;KHS(1)VNEK 115.7 0.0034433 367620000.0 871140.0 506470.0 439800.0 478350.0 422420.0 400665.0 566390.0 435087.0 1012190.0 649220.0 True False 866449.8790327527 523327.54778241913 501720.01718987135 538909.06095367 476212.68312050053 372967.97161396017 538991.5518800843 467555.4012670201 762749.3371511154 607786.223774794 1.4255832809955273 0.8610388444347666 0.8254876427995118 0.886675347142048 0.7835200346642834 0.6136499266099815 0.8868110707290389 0.7692760759912611 1.2549631882307037 1.0 19.21320444920319 4.738463006889015 7.107043948011398 0.8526689790714042 1.4335115660361255 0.5114143930157145 0.15983566893806128 0.07922580992687066 32.2986531807207 0.03655388686758037 0.22149899311243268 54759.94545709596 -4.738463006889015 0.5808425869647214 KHSPS(ph)PPPPTPTESR ddPTM_BT-474_Trastuzumab_2h_R1 2 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 KHS(0.372)PS(0.628)PPPPTPTESR;KHS(0.262)PS(0.738)PPPPTPTESR 133.93 2.3437e-05 651420000.0 166847.0 168799.0 157406.0 156864.0 153479.0 186263.0 185542.0 128891.0 194257.0 162130.0 True False 165948.7142904442 174417.37267384978 179567.39660252136 176722.9663163717 173023.640908696 173387.07722593946 176566.62462072878 138509.5009152365 146384.9652604394 151782.7245935235 1.0933307116133104 1.1491253246437776 1.1830555623731596 1.164315417249483 1.1399429109739332 1.1423373621093753 1.1632853810838943 0.9125511568340013 0.9644375909871207 1.0 17.2116480717677 1.7517136628275904 9.044061903203366 0.9559395095470958 1.149471613613497 0.8945911793388434 0.029690981575229706 0.033407190130623994 11.136552742817106 0.013910139136376756 0.007535800357974825 56.45646257538882 -1.7517136628275904 0.1935321040664012 KIAVAAASKPAVEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KIAVAAASKPAVEIK 15 2 P29373;Q5SYZ4 P29373 CRABP2 Cellular retinoic acid-binding protein 2 0 157.42 1.0988e-06 326910000.0 633610.0 578790.0 521690.0 451300.0 434360.0 675650.0 708500.0 585870.0 827650.0 652240.0 False True 630198.7141606885 598054.6752640562 595139.4173892313 508434.53372716863 489673.17134657584 628943.905809023 674227.1482671652 629590.5943875789 623686.7474418049 610613.4847892423 1.0320746754851085 0.9794324726884784 0.9746581630024892 0.8326618169964892 0.8019363861831353 1.03001967934938 1.1041799191511135 1.031078759429767 1.0214100457625415 1.0 19.219899924813063 2.510778801908248 24.51135042665135 1.0458745563145886 0.9240499261725429 0.4050172583515915 0.06847093386286662 513.2491548318134 373776.8346072905 0.024086467337588437 0.022693862378922562 324.17446434807687 -2.510778801908248 -0.1218246301420457 KIDASQTEFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIDASQTEFEK 11 1 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;O94979-5;H0YAB3;H0Y8V7;H0Y9K1 D6REX3 SEC31A Protein transport protein Sec31A 0 ; 156.08 5.0072e-05 840090000.0 987970.0 955590.0 789900.0 750930.0 742140.0 995250.0 973490.0 988990.0 1426610.0 1024620.0 False True 982650.8792937852 987396.2354836474 901111.0540661196 845997.6610054116 836647.1299915911 926450.7100664983 926398.5696070613 1062793.4557894634 1075041.0810946098 959227.8743786842 1.0244186032753402 1.0293656615464897 0.9394129154657768 0.8819569193121972 0.872208942565924 0.9658296373701436 0.9657752806726063 1.1079676520846113 1.1207358645524566 1.0 19.871514057337816 1.7967923149591645 5.302127356945859 1.0855795816419085 0.9500275169447416 0.4914653375796538 0.0566533791105171 0.17109092492048397 8.920566536002546 0.02927901755543222 0.016401553085886457 62.631428174055095 -1.7967923149591645 -0.13555206469716685 KIDFLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIDFLTK 7 1 Q99471;H3BPF6;Q99471-3;H3BMQ1 Q99471 PFDN5 Prefoldin subunit 5 0 ; 95.502 0.021517 1065430000.0 3873300.0 3747300.0 3722600.0 3441300.0 3044800.0 4022200.0 3798500.0 3675500.0 5383900.0 4201000.0 False True 3852446.5831640875 3872026.61520931 4246709.722580755 3876968.2271555616 3432537.232056482 3744154.781240365 3614752.0433208602 3949784.4738108227 4057109.985563869 3932888.583342946 0.9795463312844517 0.98452486846655 1.0797940578756648 0.9857813525599923 0.8727776440437155 0.9520114038058617 0.9191086822623207 1.0042960511364183 1.0315852838412563 1.0 21.907157885395126 3.4793604792178954 24.994970545787535 0.9599712841825804 1.0151413422238358 0.1763450082292548 0.049412283619427046 144.57858114945225 1613844.385496248 0.01424673989077532 0.019599028638662468 3015.5079600521017 -3.4793604792178954 0.05517005804125541 KIDS(ph)PPIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 KIDSPPIRR 9 2 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 KIDS(1)PPIRR 66.267 0.093691 0.0 170340.0 158930.0 140220.0 124740.0 128210.0 161830.0 176360.0 159380.0 259770.0 170930.0 True False 169422.908366553 164219.88897478607 159961.75718591135 140532.0712101196 144536.7835397929 150643.07300684418 167828.7930393754 171273.74491524132 195753.16423966378 160021.1010594646 1.0587535471562257 1.026238964033632 0.9996291496986314 0.8782096253537041 0.9032357769247091 0.9413950535864923 1.0487916401538158 1.0703197502159119 1.2232959462447455 1.0 17.28790263196587 1.9074818084792873 2.295875992319143 1.1111530477338696 0.9658898058237935 0.3914222194362853 0.07264357956162028 0.3026482703473991 2.9206818692596834 0.04370220099058154 0.021823294344276493 80.8131077793319 -1.9074818084792873 -0.1452632419100761 KIDTHPS(ph)PSHSSTVK ddPTM_BT-474_Trastuzumab_2h_R1 6 KIDTHPSPSHSSTVK 15 1 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H7C477;H0Y594 Q8NI27 THOC2 THO complex subunit 2 1 KIDTHPS(0.977)PS(0.022)HSSTVK;KIDTHPS(0.963)PS(0.036)HSSTVK;KIDT(0.024)HPS(0.969)PS(0.007)HSSTVK;KIDTHPS(0.797)PS(0.203)HSSTVK;KIDTHPS(0.963)PS(0.036)HSSTVK;KIDTHPS(0.997)PS(0.003)HSSTVK 218.69 8.9511e-13 8575510000.0 5417980.0 7704130.0 8822380.0 8775670.0 8983160.0 11048630.0 11047350.0 5339560.0 12510320.0 10003380.0 True False 5388810.197674162 7960557.309805068 10064494.418498367 9886668.922210295 10127112.178639157 10284864.21377746 10512947.475524735 5738025.080936288 9427319.265699465 9364955.724075507 0.5754229231239784 0.8500368335260785 1.074697490840718 1.0557090939355498 1.0813838823182358 1.0982288135476224 1.1225837884634051 0.6127124622901233 1.0066592457520789 1.0 23.15884074299082 4.6370615050435795 2.9674724600611433 0.9864614983957329 0.5490367576642944 0.46728489898830683 0.13953097788474425 0.3260788889088102 4.51533170081732 0.039294768309265 0.2952272952479487 43357.22768042486 -4.6370615050435795 -0.43742474073143855 KIDYFER ddPTM_BT-474_Trastuzumab_2h_R1 1 KIDYFER 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 74.376 0.074317 287340000.0 607880.0 638030.0 663200.0 608200.0 494600.0 609190.0 725260.0 530640.0 889850.0 710990.0 False True 604607.2416218176 659266.442852721 756572.795362262 685198.0576398487 557584.3782761224 567078.12917901 690176.4030377486 570239.0513353221 670558.390879104 665614.0094908357 0.9083451264559688 0.9904635921906596 1.1366539534542033 1.0294225299794904 0.8376992826557976 0.8519624303172328 1.0369018578285365 0.8567113119682215 1.0074283012643477 1.0 19.344326273315836 3.2769530312992874 24.929547522201197 0.9236910026591308 1.0229839217672452 0.1914367833034275 0.08357003719122415 228.6995856630437 148501.1563225282 0.0231258052455998 0.0313118509510349 1892.1389738273788 -3.2769530312992874 0.09929291910811433 KIEAYMEDDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KIEAYMEDDR 10 1 Q13572-2;Q13572;G3V588;G3V3C0 Q13572-2 ITPK1 Inositol-tetrakisphosphate 1-kinase 0 ;; 148.18 4.099600000000001e-05 1030830000.0 2141570.0 2188460.0 2154400.0 2003750.0 1967230.0 2435090.0 2249640.0 2237730.0 2987750.0 2559050.0 False True 2130040.0250707967 2261301.5681479927 2457720.793619506 2257424.5445508845 2217745.0798142655 2266757.959885286 2140816.318740642 2404720.775562697 2251459.046298864 2395729.2380870692 0.8890988143433025 0.9438886215512343 1.025875860488281 0.9422703153021509 0.9257077321413334 0.9461661709714895 0.8935969410508307 1.0037531526237111 0.9397802600166112 1.0 21.19203343532138 0.9844201705859676 1.0151858026278677 0.9967588967569894 0.9444669257191227 0.1377757228748685 0.04029661038738397 1.2125658649061597 2.6395759723446406 0.038242217231583206 0.012624482581576812 9.64761958733335 -0.9844201705859676 -0.05229197103786665 KIEDLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEDLEK 7 1 Q96IZ0;H0YHP5;Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q96IZ0;Q9ULJ8 PAWR;PPP1R9A PRKC apoptosis WT1 regulator protein;Neurabin-1 0 ; 107.47 0.01198 758610000.0 1189170.0 985700.0 875310.0 851350.0 857240.0 1186470.0 1213490.0 1101560.0 1916480.0 1276620.0 False True 1182767.6408492073 1018508.4286317673 998546.0396690918 959130.822709118 966404.4327404442 1104452.1215499619 1154788.852718028 1183764.0008083398 1444189.1835163073 1195145.01863063 0.9896436184827139 0.8522048895779618 0.8355019885479698 0.8025225455970759 0.8086085099929784 0.9241155711927059 0.9662332476113725 0.990477291337138 1.2083798710645393 1.0 20.188754254446952 1.8757942462256336 1.414900341319548 1.090880201191572 0.8571607198415557 0.606955251370469 0.07319893750276123 0.2676854229225784 1.0010038741873917 0.053816526248218054 0.023125101703520584 75.12668853056223 -1.8757942462256336 -0.2337194813500162 KIEEIKDFLLTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEEIKDFLLTAR 13 2 J3KT73;J3QL01;P63173;J3KSP2 J3KT73 RPL38 60S ribosomal protein L38 0 ; 239.75 4.5186000000000006e-17 5270400000.0 8337100.0 7717500.0 7372300.0 6892100.0 6583900.0 8795000.0 9316800.0 8480500.0 13145400.0 9245500.0 False True 8292213.9799388815 7974372.322172742 8410255.758819656 7764639.153337071 7422320.63916734 8187022.351203076 8866110.79036772 9113357.97310643 9905892.309335468 8655444.274529224 0.9580344713605011 0.9213128834575594 0.9716723361698376 0.8970815254609672 0.8575320230538998 0.945881238620576 1.0243391915142281 1.0529047018331261 1.1444695379168457 1.0 23.045176442782076 2.1324040247700182 2.3430843455710058 1.0696676680157509 0.9209215470997906 0.6853495539941918 0.044058957088436414 0.16895907939050495 1.8364515663126628 0.021521955425918775 0.013378997100671744 135.6450733589243 -2.1324040247700182 -0.1487461209159603 KIEFPLPDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEFPLPDEK 10 1 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ; 136.27 0.00019592 1804250000.0 3676300.0 3139500.0 2944100.0 2687600.0 2848400.0 3605500.0 3720500.0 3410600.0 5186000.0 3691900.0 False True 3656507.2092753244 3243996.359632171 3358603.6894240566 3027849.8844341612 3211126.8562104874 3356260.2714340724 3540525.201309791 3665116.2906758864 3907979.7888397323 3456279.781205392 1.057931487247859 0.9385803710892913 0.9717395297937164 0.8760430509413755 0.929070289295444 0.9710615123476962 1.0243745950667853 1.0604223392464085 1.1306896536821471 1.0 21.72078857577813 2.0989740664779224 2.1417908038852316 1.0698362215708084 0.9504319203625994 0.46539518982054384 0.05186901980257992 0.26299238367782307 2.339784709930183 0.026841167792752786 0.015651549932457032 125.59549631834074 -2.0989740664779224 -0.119404301208209 KIEFPLPDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEFPLPDRR 10 2 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ; 161.94 3.8915e-06 1339110000.0 1308370.0 1536630.0 1459300.0 1393560.0 1160720.0 1500470.0 1488210.0 1297830.0 1654500.0 1530720.0 False True 1301325.881293572 1587775.8006375493 1664756.7555370172 1569984.5531150736 1308530.811873557 1396746.0406264544 1416219.5967857153 1394680.6648472063 1246770.6441641597 1433028.1390846767 0.9080951349111488 1.1079864779568913 1.1617055591109002 1.0955713361761867 0.9131229012078993 0.9746815170835397 0.9882706125298435 0.9732402503540759 0.8700252354852669 1.0 20.450635508107304 3.246102771007297 24.999189876532913 0.9567367985522246 1.077840560654935 0.38574528863168844 0.070676409769832 174.8631929107547 579597.0658574488 0.01979492707182242 0.026292520406652177 1762.393047980058 -3.246102771007297 0.12110376210271045 KIEFPMPNEEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KIEFPMPNEEAR 12 1 P17980;E9PM69;R4GNH3 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 ;;; 114.74 0.0016432000000000007 1551230000.0 1813830.0 2522390.0 2279790.0 2415120.0 2393950.0 2261070.0 2418790.0 1982830.0 2064360.0 2323100.0 False True 1804064.5408154593 2606346.226333048 2600764.6157100876 2720873.944372167 2698805.3424466695 2104767.5528862667 2301783.887024893 2130798.843206728 1555626.1390067844 2174837.7690940257 0.8295168340611356 1.1984094921336483 1.1958430429472864 1.2510698420993507 1.2409226015837096 0.9677814054898687 1.0583703850166946 0.9797507076099551 0.7152837609836127 1.0 21.05247635720383 1.9322761039764818 1.2966754246129206 0.875331909248516 1.1432814752134772 0.3361514439993186 0.13986792320491445 0.4856596143794663 1.5127257743244933 0.10415294131201237 0.04623892785801244 85.56104968652096 -1.9322761039764818 0.2679495659649612 KIEFSLPDLEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEFSLPDLEGR 12 1 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 ; 157.2 0.00010256 1816100000.0 2532600.0 3009200.0 2647100.0 2728300.0 2662800.0 2906400.0 2928500.0 2759800.0 3729200.0 2954500.0 False True 2518964.7629983113 3109359.40290019 3019788.6709943386 3073702.500261097 3001891.7963478714 2705487.408929686 2786837.267043606 2965750.289980446 2810188.628719845 2765941.2805252913 0.9107079679290676 1.124159585307494 1.0917761314227314 1.1112681682372367 1.0853056850786686 0.9781434725237101 1.0075547469736401 1.0722390640979942 1.0159972116928493 1.0 21.3993390984828 2.765674158691427 24.491773269852988 1.022985171065172 1.0720475871260209 0.13437207715512867 0.060084402294044284 1179.4292174063917 1065381.2344951627 0.018192678788181704 0.01929028528121955 583.0075228072458 -2.765674158691427 0.049062416060848824 KIEIGDGAELTAEFLYDEVHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KIEIGDGAELTAEFLYDEVHPK 22 1 Q6IBS0 Q6IBS0 TWF2 Twinfilin-2 0 177.93 4.031e-17 42817000.0 45435.0 44836.0 36452.0 35350.0 35162.0 50729.0 49651.0 45565.0 68189.0 51706.0 False True 45190.38300830303 46328.33915606563 41584.12475353616 39825.30637548282 39639.67227849782 47222.22363322119 47249.191444760836 48965.2916743818 51384.73463578723 48406.07881226626 0.9335683475533167 0.9570768856477975 0.859068236343048 0.8227335771182307 0.8188986435408809 0.9755432539033697 0.9761003701210298 1.011552533810564 1.0615347472178673 1.0 15.562900611380513 2.554994415435899 4.557788888335354 1.008552708404199 0.8787211088287477 0.6680724290155586 0.04511925380780189 0.1542757429231675 5.867552394300412 0.017008659084859924 0.015711223548632375 358.9173193211925 -2.554994415435899 -0.12983159957545132 KIEISQHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEISQHAK 9 1 Q6P4E4;E9PEL3;P61513;G5E9R3;M0R0A1;C9J4Z3;M0R2L6 Q6P4E4 RPL37A 60S ribosomal protein L37a 0 ; 125.74 0.00032016 2756400000.0 3631100.0 4807900.0 5169900.0 4268400.0 4072700.0 5458600.0 5707500.0 5278500.0 7183200.0 5831900.0 False True 3611550.5610531396 4967928.04506307 5897776.98242364 4808779.002351093 4591334.20421586 5081259.830162259 5431406.420232675 5672408.473679888 5412996.609948624 5459703.149059209 0.6614921109173244 0.909926402485659 1.080237665199786 0.8807766413417036 0.8409494213997729 0.9306842682532728 0.9948171671510364 1.0389591373035238 0.9914452236989051 1.0 22.38039108145417 2.311985233764835 3.038785690495413 1.0144813865701887 0.8882060595110217 0.28750354574995185 0.0962739528563739 0.36534806513262075 6.860884589870458 0.03889370415221493 0.03017004280624056 205.10924394448935 -2.311985233764835 -0.126275327059167 KIEITVEPSQRPGTAINRS(ph)PS(ph)PISNQPSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KIEITVEPSQRPGTAINRSPSPISNQPSPR 30 3 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 2 KIEITVEPS(0.002)QRPGT(0.04)AINRS(0.958)PS(0.997)PIS(0.002)NQPSPR 104.54 0.00016439 201180000.0 215310.0 235500.0 241060.0 249480.0 239660.0 278870.0 288810.0 256180.0 316180.0 263260.0 True False 214150.79488318987 243338.4751372439 274999.1526689185 281064.1424202392 270179.2804238893 259592.37328936913 274839.15693865926 275297.4524556817 238261.67559493773 246458.5214117746 0.8689121141216049 0.9873404812434226 1.1158029801268634 1.1404115419107248 1.0962464550880058 1.0532903135276501 1.1151538009897708 1.1170133249145158 0.9667414793780174 1.0 17.91098533812388 4.536244014969895 2.9044445591873 1.0853443107909857 0.868178540234768 0.5828350721924815 0.05380166305571118 0.18659116791060704 2.7474783321539604 0.012993809258912315 0.07459587832746693 34375.10354055256 -4.536244014969895 -0.21716577055621766 KIEMVR ddPTM_BT-474_Trastuzumab_2h_R1 5 KIEMVR 6 1 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ;;;; 135.35 0.021868 6414380000.0 5986860.0 6517540.0 5839510.0 5508100.0 5183820.0 6233570.0 6531450.0 5603930.0 8005600.0 6555960.0 False True 5954627.410962683 6734472.378963877 6661662.250069184 6205424.895241779 5843948.750091651 5802657.978145416 6215498.810938009 6022123.712779947 6032727.149544026 6137553.019960263 0.9701956775928977 1.0972568965290144 1.0853938415528857 1.0110584584867597 0.9521626503406544 0.945435087774278 1.0126998155004534 0.9811929433758173 0.9829205759892701 1.0 22.549232151692987 3.503117500301811 5.798574889534945 0.9791613339760761 1.0549426385904 0.4362001165610566 0.03654429621367368 0.1557248167370715 16.71039344692053 0.00980701195092211 0.014687387189797785 3185.059137065877 -3.503117500301811 0.07578130461432386 KIEPELDGSAQVTSHDASTNGLINFIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIEPELDGSAQVTSHDASTNGLINFIK 27 1 P06744;A0A2U3TZU2;P06744-2;K7EQ48 P06744 GPI Glucose-6-phosphate isomerase 0 ; 290.66 1.1250999999999999e-70 5032900000.0 727800.0 834740.0 777020.0 736280.0 649800.0 1100770.0 1086940.0 836880.0 1413850.0 1147120.0 False True 723881.6056661815 862523.8162890134 886417.6620210867 829492.9725075108 732548.1783336529 1024676.3608338597 1034360.5596859747 899332.2351905335 1065425.6121193694 1073909.819501159 0.6740618183400457 0.8031622400935524 0.8254116369220237 0.7724046818873654 0.6821319304761811 0.9541549413430555 0.9631726434594338 0.837437388931113 0.9920997022024339 1.0 20.03444141886636 2.726945059162815 24.91295212519751 0.9321637009288196 0.759583081853128 0.7149905429223048 0.06190463820035357 447.1816537521966 959109.9830239195 0.020413979778599323 0.01939433407831579 533.2674297160604 -2.726945059162815 -0.17258061907569167 KIEQDYTLVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KIEQDYTLVPR 11 1 A0A3B3IRS3;Q8N8V2 A0A3B3IRS3 GBP7 Guanylate-binding protein 7 0 59.542 0.064478 128220000.0 64375.0 86626.0 87522.0 81237.0 82072.0 72879.0 84552.0 78075.0 65437.0 102720.0 False True 64028.412152734854 89509.29404347729 99844.33684513866 91521.59587058263 92523.3827211443 67841.04626871271 80461.89673999356 83901.35295681683 49310.9281608765 96164.32165698356 0.6658229481524662 0.9307952523468669 1.0382679888418664 0.9517209115979474 0.9621383599124587 0.7054700235987784 0.8367125702503235 0.87247901832128 0.5127777881776956 1.0 16.55321411225619 2.750496685044193 24.725142167930954 0.7899213646334012 0.9203900312483025 0.14787699134476118 0.1478550799440199 1232.2509847264666 2552562.0634322427 0.0443915680312332 0.046735427807592586 562.9848201328248 -2.750496685044193 0.1304686666149013 KIESER ddPTM_BT-474_Trastuzumab_2h_R1 2 KIESER 6 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 91.906 0.07593899999999999 687630000.0 650510.0 883100.0 825370.0 775240.0 805610.0 728730.0 842820.0 739910.0 894410.0 957350.0 False True 647007.726438456 912493.4496547764 941574.9217553526 873385.3045128526 908199.658275429 678354.610345902 802049.5767149364 795125.84138685 673994.6399799743 896251.1033714289 0.7219045243064206 1.0181225397907445 1.0505704463999308 0.9744872851229281 1.0133317045402268 0.7568800839342174 0.894893823503107 0.8871686053114178 0.7520154089011526 1.0 19.773543464348993 2.7570734559088637 24.978343657720483 0.8573964361198345 0.9654683203579372 0.16768841446647487 0.1074929431453975 1335.7718308519304 1802280.1807957962 0.03188259709745917 0.033760158405466006 571.5753038750915 -2.7570734559088637 0.10807188423810266 KIGDEYFTFITDCKDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIGDEYFTFITDCKDPK 17 2 P49368;P49368-2;B4DUR8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 193.9 5.881100000000001e-11 2762200000.0 2403550.0 1767000.0 1582850.0 1565920.0 1540840.0 2367270.0 2421360.0 2201250.0 3875100.0 2429140.0 False True 2390609.55385951 1825813.526825945 1805701.5216211663 1764165.3114426031 1737056.8407257984 2203626.196854178 2304229.566306538 2365518.452721014 2920133.5286796857 2274110.2055086144 1.0512285411976505 0.8028694134537749 0.7940255125926553 0.775760694081244 0.7638402204598955 0.969005895807643 1.0132444596242367 1.0401951703971866 1.2840774038154343 1.0 21.116870739600166 2.1893734214752465 1.4962017925242599 1.1162080325149293 0.8321111651550823 0.5527282006322409 0.10528580321461739 0.29581003338965783 1.2862836647034879 0.061967162890305405 0.03521110695647835 154.65836743395516 -2.1893734214752465 -0.28409686735984696 KIGEEEIQKPEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIGEEEIQKPEEK 13 2 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 ; 150.57 2.4922e-05 470120000.0 981560.0 697810.0 629250.0 566160.0 558330.0 956920.0 930810.0 845640.0 1600770.0 857370.0 False True 976275.3900215682 721036.1840149468 717842.9304609521 637835.7979503078 629430.016018818 890770.372747385 885783.1642604942 908745.9508729114 1206281.6827190476 802651.9125686133 1.2163122951982164 0.8983174059942333 0.8943390269434991 0.7946605346134817 0.7841880224324667 1.1097841527553065 1.10357073893445 1.1321793876560766 1.502870252758453 1.0 19.614414941772402 2.310908623011721 1.7975031348113157 1.2099004711817352 0.912323533740954 0.3623944006003592 0.1657991300161175 0.3752242377187822 2.458518764984302 0.08046162854107007 0.05466069275506569 204.60141033325564 -2.310908623011721 -0.2975769374407812 KIGELVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIGELVR 7 1 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 131.06 0.0056162 1757640000.0 2493000.0 2854100.0 2428800.0 2615800.0 2423800.0 2807400.0 2886100.0 2515300.0 3351300.0 2954000.0 False True 2479577.964998336 2949096.9931601174 2770753.928491948 2946960.0117959846 2732456.5630118577 2613331.045908755 2746488.317027333 2703004.4584345985 2525417.020119279 2765473.190953362 0.8966197803362299 1.0663986918432045 1.0019095240394522 1.065625955600046 0.9880611289057111 0.9449851311007801 0.9931350359901757 0.9774111957681904 0.9131952637908862 1.0 21.3990949256734 3.003706763960214 24.964198349136762 0.9676228306037702 1.0133535727571499 0.13282975576825318 0.04957188970915191 193.64333264627834 1304120.6261665982 0.013595889784557218 0.016183510427415358 1008.5716675909831 -3.003706763960214 0.04573074215337969 KIGGIFAFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KIGGIFAFK 9 1 H0YF61;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 H0YF61 SCP2 Non-specific lipid-transfer protein 0 120.12 0.0028892 0.0 141540.0 168960.0 189780.0 158570.0 134490.0 179790.0 221670.0 163190.0 264820.0 201240.0 False True 140777.96436657244 174583.7314615232 216499.3744026692 178644.94574145175 151616.50431531665 167361.5404801363 210946.97523836658 175368.06646202935 199558.6594061969 188396.6909097679 0.7472422349180097 0.9266815176978858 1.149167606698363 0.9482382353892472 0.8047726506403076 0.8883464973399859 1.119695755905814 0.9308447277665902 1.0592471579119986 1.0 17.523414099419387 2.2733790668241607 24.997619379828464 1.0154518625860478 0.9191911704687353 0.21226986141839665 0.10843450643485253 358.0800550635587 257079.4020228328 0.039548680664834725 0.033087443881674505 187.66317807380472 -2.2733790668241607 -0.09626069211731247 KIHIDLPNEQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KIHIDLPNEQAR 12 1 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 ;; 170.07 2.7358e-05 1085710000.0 1189070.0 1234860.0 1279720.0 1253160.0 1313100.0 1472090.0 1426940.0 1279960.0 1675720.0 1487470.0 False True 1182668.1792380977 1275961.568611365 1459893.4524743578 1411809.927510612 1480315.5016465338 1370327.8832271202 1357913.4607598428 1375477.1147051854 1262761.2594975918 1392538.391112863 0.8492894607328957 0.9162846617044904 1.048368548968813 1.0138391419013932 1.0630338891149154 0.9840503443011053 0.9751353854414387 0.9877480746552036 0.9068053473832356 1.0 20.409285671327293 4.448430443249286 4.746725093344284 0.9974969712146023 0.8620718902847737 0.5828195921806664 0.040547089737256146 0.1188991712658978 6.541516284121026 0.010296129261958864 0.033388990352031925 28082.155719955055 -4.448430443249286 -0.13542508092982863 KIHLFDIDVPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KIHLFDIDVPGK 12 1 Q9NQR4;H7C579 Q9NQR4 NIT2 Omega-amidase NIT2 0 62.14 0.051853 396260000.0 717580.0 794190.0 665110.0 585620.0 595760.0 859790.0 827440.0 645910.0 1058500.0 833150.0 False True 713716.6290106332 820624.134052006 758751.7067602437 659759.4319550279 671626.5046538267 800354.7410279571 787413.5660722415 694111.0840645225 797646.8581733237 779977.6537043992 0.9150475345299084 1.0521123652127233 0.9727864678643732 0.8458696589852144 0.8610842906383621 1.0261252193915806 1.00953349411041 0.8899115003717543 1.0226534752438188 1.0 19.573073265909567 2.716734259611622 24.65874608232686 0.976874992893754 0.9339705041679853 0.16079603473792947 0.06525463125379942 1916.4964014466523 2165196.846705166 0.02315310795275759 0.021848559201315506 520.875894898042 -2.716734259611622 -0.042904488725768686 KIHPQTIIAGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIHPQTIIAGWR 12 1 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 155.02 4.3655e-05 632780000.0 1002440.0 1407480.0 1290510.0 1289730.0 1072010.0 1216450.0 1461330.0 1155970.0 1875290.0 1435210.0 False True 997042.974421553 1454327.120960374 1472202.5906859972 1453009.6857610042 1208524.1191989202 1132359.6747152912 1390639.8850772856 1242234.3512967227 1413149.9070985855 1343613.6690549 0.7420607555465513 1.0823997659858209 1.0957037908981282 1.0814192496144026 0.8994580414242124 0.8427717734605922 1.0349998047098343 0.9245472712186028 1.0517531487251073 1.0 20.35768694712846 1.2255076092125494 24.988762392332006 1.0258765693547334 0.9703485773951247 0.04626141609053902 0.11029028767942294 1049.2839892409568 2008695.426090738 0.10259730082255512 0.026272272811340612 16.807673739395756 -1.2255076092125494 -0.05552799195960867 KIHSQEEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIHSQEEALR 10 1 O00764;F2Z2Y4;O00764-3;O00764-2 O00764 PDXK Pyridoxal kinase 0 ; 183.0 1.1142e-06 429530000.0 225990.0 254210.0 264860.0 252840.0 151542.0 201642.0 270570.0 193127.0 370670.0 233750.0 False True 224773.29494984943 262671.2261768098 302149.9857956103 284849.5180757305 170839.9754401945 187702.9631542116 257481.4954222259 207539.11741903514 279323.3452235294 218831.87487655666 1.0271506154057508 1.200333481239801 1.3807402873372698 1.3016820252370203 0.7806905439921198 0.8577496457501682 1.1766178741898161 0.9483952807885425 1.276428972612404 1.0 17.73946336968361 3.2679180735660043 24.99969755077439 1.005150363685423 1.2364852891294695 0.319516274230902 0.1576509800121863 250.1080444155517 212980.8949826265 0.044520569644064825 0.06027213448395572 1853.1820013946412 -3.2679180735660043 0.23133492544404644 KIIDSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIIDSVR 7 1 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 111.95 0.010365 651010000.0 1277840.0 1450200.0 1227240.0 1317310.0 1280360.0 1416820.0 1230680.0 1226040.0 1697270.0 1498580.0 False True 1270960.2514213698 1498469.0303355874 1400024.7246386947 1484081.3109331618 1443406.2567117177 1318878.5682355354 1171147.3067458498 1317533.330504972 1279000.5507527965 1402939.3414011123 0.9059267310531507 1.0680925298160575 0.9979224926720589 1.0578371189241962 1.0288443798790268 0.9400823893913862 0.8347811428370293 0.9391235184759695 0.9116577695194302 1.0 20.420021202122584 2.632587695963643 4.6232635310725065 0.9130811892077217 1.0164276592733603 0.3684145938698057 0.05624982971080285 0.20714456913779336 7.177947703292932 0.017571153980477473 0.016511846379376558 429.12883336824746 -2.632587695963643 0.10334647006563857 KIIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 37 1 P61978;P61978-2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 KIIPTLEEGLQLPS(0.842)PT(0.157)AT(0.001)SQLPLESDAVECLNYQHYK;KIIPTLEEGLQLPS(0.85)PT(0.15)ATSQLPLESDAVECLNYQHYK 228.14 6.6076e-40 4779700000.0 1455330.0 1851090.0 1683400.0 1748480.0 1787890.0 1859620.0 1900350.0 1628960.0 2483700.0 2065730.0 True False 1447494.6649823629 1912702.4116424636 1920408.087624899 1969837.3887243052 2015567.1938457259 1731068.846474617 1808422.8104580198 1750521.2668912741 1871625.4148749006 1933893.3428395714 0.748487330152851 0.9890423475133366 0.9930268878247072 1.018586364143514 1.0422328621733767 0.8951211569573204 0.9351202418447127 0.9051798401254908 0.9678017775927386 1.0 20.883076799506284 4.742230175736847 24.85033378683054 0.9662626982853932 0.7484872395542431 0.6835683626407242 0.04543911308684758 217.60823119348152 1473580.825689633 0.012152866877104934 0.08999032295344755 55237.011744594274 -4.742230175736847 -0.21777545873115012 KIKDPDASKPEDWDER ddPTM_BT-474_Trastuzumab_2h_R1 2 KIKDPDASKPEDWDER 16 3 P27797;K7EJB9 P27797 CALR Calreticulin 0 ; 95.347 0.0016574 1571400000.0 1511950.0 1270060.0 1392400.0 1233700.0 1333460.0 2061720.0 2178890.0 1793280.0 3258500.0 1827260.0 False True 1503809.8291934375 1312333.1793325169 1588437.8170422409 1389886.2935058875 1503268.2269633594 1919198.149166843 2073488.7665318907 1927103.6596913293 2455486.3366629863 1710642.7024040096 0.8790905471259985 0.7671579678726959 0.9285620046839523 0.8124936268413299 0.8787739396723689 1.1219164273578257 1.2121109590085435 1.1265377959892628 1.435417421307342 1.0 20.706107028567796 2.689407455269508 2.8694916233885497 1.195065934710743 0.8451929327798603 0.6990260725043599 0.10787157359296257 0.14227065642871164 2.3308065014461326 0.034945888790408004 0.033801870312003456 489.11102832438286 -2.689407455269508 -0.3498730019308828 KILDDWGETCK ddPTM_BT-474_Trastuzumab_2h_R1 1 KILDDWGETCK 11 1 P55145 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor 0 85.45700000000002 0.024374 280260000.0 507690.0 485220.0 465520.0 482300.0 447130.0 567030.0 552530.0 529450.0 841030.0 561170.0 False True 504956.6534496621 501370.2543783164 531061.1696276241 543359.130548667 504069.3551528563 527832.5507450451 525802.0130304261 568960.2474926254 633769.4257246194 525355.6501581913 0.9611710720111474 0.9543444602286991 1.0108602990521083 1.0342691287036785 0.9594821241592711 1.0047147119976876 1.0008496394244553 1.0830001491776173 1.206362633644053 1.0 19.00293488960676 1.675679431581794 3.5628902533533995 1.11435810279979 0.9893286471428729 0.46722508333628987 0.052329721467032894 0.1463301511528671 4.346967015714171 0.028765057555577362 0.013125623731342692 47.389205931163076 -1.675679431581794 -0.12502945565691703 KILDSVGIEADDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 KILDSVGIEADDDR 14 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 ;;; 216.99 9.4986e-12 3613030000.0 3180180.0 3222870.0 2599510.0 2379310.0 2528070.0 2961090.0 2791070.0 2805760.0 3412940.0 3078190.0 False True 3163058.26423121 3330141.279683947 2965498.41265403 2680530.402043851 2850004.7294551483 2756396.8179561035 2656055.2811771887 3015140.0585605977 2571866.6680529607 2881737.278828957 1.09762200998301 1.1556019711266694 1.0290661936604821 0.9301786188965603 0.9889883961293294 0.956505243627279 0.9216854363130985 1.0462924849921957 0.8924709018228346 1.0 21.458507383737754 4.053882044219962 4.168694856919969 0.9677456474924574 1.124946218125242 0.6916528473512884 0.0434688716400012 0.10935112443938623 3.9625280717956204 0.010607615678752201 0.024081676862365318 11320.928414135744 -4.053882044219962 0.1572005706327847 KILDSVGIEADDDRLNK ddPTM_BT-474_Trastuzumab_2h_R1 4 KILDSVGIEADDDRLNK 17 2 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 ;;; 260.97 1.6132999999999994e-27 6026080000.0 3102360.0 3045430.0 2594600.0 2447660.0 2624620.0 3464720.0 3345430.0 3112480.0 4868270.0 3469150.0 False True 3085657.238464602 3146795.2965486874 2959897.127332516 2757533.5050357697 2958849.7996584657 3225212.0614735973 3183598.7701163352 3344749.0624531996 3668550.0899758567 3247745.8769112546 0.9500919577486137 0.9689167243409526 0.9113696820847033 0.8490607361368747 0.9110472037524249 0.9930617060904138 0.9802487296647957 1.0298678496465983 1.1295680847618548 1.0 21.631007321162876 2.0972813015783363 1.3316818180717103 1.0602087681126524 0.9194645855993374 0.6142996185664036 0.0449845260032818 0.30153678077951923 1.0077174894686165 0.03162392656721407 0.016078496925616196 125.10691113480118 -2.0972813015783363 -0.140744182513315 KILGVGGEDDDGEVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KILGVGGEDDDGEVHR 16 1 E9PN66;E9PNB3;E9PKN9;E9PS55;E9PMY0;E9PMW4;E9PQ46;E9PIN5;E9PIK4;U3KQ32;E9PKZ4;E9PPM1;O14683 E9PN66 TP53I11 Tumor protein p53-inducible protein 11 0 ; 227.89 2.9964000000000007e-15 370020000.0 245510.0 374440.0 402700.0 312510.0 429920.0 486070.0 338460.0 307140.0 449370.0 396700.0 False True 244188.20143872502 386903.00904624036 459396.65966885234 352073.7339576274 484667.76366451813 452469.12498570484 322087.39675724035 330060.34642531857 338628.7847495008 371382.26636804314 0.6575117434302378 1.0417918249839533 1.2369913732326308 0.9480090080788057 1.3050374440448054 1.2183379928467126 0.867266495805292 0.8887348059269632 0.911806554634778 1.0 18.50254540216653 2.2156003563120574 24.997652008515406 0.9042066483682334 1.079766754389545 0.14959133227942722 0.17395634232768795 408.80128687574035 445073.67065907654 0.06628221732688828 0.048983840336660506 164.285924600224 -2.2156003563120574 0.17556010602131167 KILIEDWK ddPTM_BT-474_Trastuzumab_2h_R1 1 KILIEDWK 8 1 K7ELL7;P14314-2;P14314;K7EPW7 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 123.88 0.005165 0.0 2105700.0 2096600.0 1827800.0 1748900.0 1847500.0 2248100.0 2389400.0 2258800.0 3533300.0 2300000.0 False True 2094363.1451652632 2166384.063578537 2085138.352477597 1970310.5606812423 2082768.1740095746 2092694.1384581705 2273815.5936055966 2427363.1259539933 2662565.558794336 2153212.0308709317 0.9726692565051918 1.006117387660275 0.9683850557133474 0.9150564516789786 0.9672842916297175 0.9718941323264467 1.0560110017060806 1.1273219223896742 1.2365552117583984 1.0 21.038058960740347 2.0182816148551677 2.3658046268589614 1.134952784164099 0.9654210613018105 0.5942495972450323 0.05742376513282371 0.18583435503221038 1.9642303935034362 0.029088679214087323 0.016184450771851995 104.29935311491701 -2.0182816148551677 -0.16953172286228846 KIMGVEEEDDDDDDDDNLPQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KIMGVEEEDDDDDDDDNLPQLK 22 1 Q6AI12;K7ERW4 Q6AI12 ANKRD40 Ankyrin repeat domain-containing protein 40 0 120.33 6.026100000000001e-05 192840000.0 115910.0 87831.0 92335.0 78693.0 69899.0 142790.0 120460.0 115280.0 207000.0 141790.0 False True 115285.95343881178 90754.40174003938 105334.96540979262 88655.52573142498 78800.22332616801 132919.26339150514 114632.88959811254 123882.77897997866 155987.62365789135 132740.84080747375 0.8685040168309737 0.6836961494892806 0.7935384827234115 0.667884316478078 0.5936396277650464 1.0013441423373999 0.863584175757747 0.9332679997082227 1.1751290914612673 1.0 17.018252792132834 2.0966847801426294 1.0747614314929608 1.0531671330052212 0.7296575097617239 0.5822962120624577 0.1096153617771366 0.3724305291987555 0.8014844846356369 0.08181020296718683 0.04103548196974027 124.93518957757516 -2.0966847801426294 -0.3235096232434973 KINS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_BT-474_Trastuzumab_2h_R1 1 KINSSPNVNTTASGVEDLNIIQVTIPDDDNER 32 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 KINS(0.497)S(0.497)PNVNT(0.003)T(0.003)ASGVEDLNIIQVTIPDDDNER 183.86 6.3194e-20 94936000.0 127210.0 108290.0 122130.0 108410.0 109880.0 155840.0 150680.0 137420.0 178060.0 155100.0 True False 126525.11549435981 111894.36718731269 139324.84242700998 122134.69488447222 123872.5666902149 145067.14760790058 143391.03274650182 147674.97820462086 134179.49888175895 145201.3852122095 0.8713767799766191 0.7706150118594313 0.9595283283516127 0.8411400118943377 0.8531087118017305 0.9990755074125998 0.9875321267558027 1.0170356018904105 0.9240924160995968 1.0 17.14769569105734 2.7396503607941822 24.997334904880194 0.9892830115841884 0.8588105449498319 0.6275744204258052 0.04864054526398764 61.372169150833635 1407810.3643887131 0.014780037110826752 0.01487760046825557 549.0986308184498 -2.7396503607941822 -0.13047246663435652 KIPDPDS(ph)DDVSEVDAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KIPDPDSDDVSEVDAR 16 1 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8YGP5;A0A2R8Y7R0;A0A2R8Y583 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 1 KIPDPDS(1)DDVSEVDAR;KIPDPDS(1)DDVSEVDAR;KIPDPDS(1)DDVSEVDAR 168.75 3.5923e-09 3782650000.0 2512960.0 2397250.0 2129690.0 2004070.0 2234300.0 2668250.0 2588910.0 2419500.0 3395820.0 2633090.0 True False 2499430.5025761058 2477041.017081776 2429531.8404026744 2257785.056518072 2518824.861266358 2483800.1578848897 2463674.5327033866 2600055.3759720563 2558965.6626567175 2465043.941898236 1.0139496745244183 1.0048668808614833 0.985593724764105 0.9159208150989138 1.0218174282632493 1.0076088769323155 0.999444468647567 1.0547703964943738 1.0381014387460192 1.0 21.233181933652972 2.3428619470268863 1.44205267001309 1.0336360816012164 0.9852192346950694 0.23566870614718616 0.030666272023154178 0.530801616573249 2.2091809953789396 0.017212984149674156 0.011285601478329218 220.22263109013053 -2.3428619470268863 -0.048416846906147004 KIPDPDSDDVSEVDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 KIPDPDSDDVSEVDAR 16 1 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8YGP5;A0A2R8Y7R0;A0A2R8Y583 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 0 ;;;;; 144.5 2.101e-06 5262370000.0 2600630.0 2865860.0 2684890.0 2376860.0 2372810.0 2968280.0 3048970.0 2799390.0 3577420.0 3186860.0 False True 2586628.497037157 2961248.417651044 3062899.1745177647 2677770.2322950517 2674973.2887532646 2763089.7901795404 2901479.672903514 3008294.6968143885 2695812.7759720455 2983471.866391889 0.8669860527846502 0.9925511451972494 1.0266224424706685 0.8975349365480887 0.8965974571056666 0.9261323430950026 0.9725178593396513 1.0083201154675272 0.9035824357319218 1.0 21.50856074192395 2.1902369519885063 8.182644817480094 0.9759084409577706 0.9378637589264368 0.10478987631690573 0.05121620076623769 0.6294244969534314 94.48882908524412 0.019895685248162338 0.014742403723113435 154.96618871069043 -2.1902369519885063 -0.03804468203133382 KIPEPS(ph)PVTR ddPTM_BT-474_Trastuzumab_2h_R1 8 KIPEPSPVTR 10 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 KIPEPS(1)PVTR;KIPEPS(0.989)PVT(0.011)R;KIPEPS(1)PVTR;KIPEPS(1)PVTR;KIPEPS(1)PVTR;KIPEPS(1)PVTR;KIPEPS(0.997)PVT(0.003)R;KIPEPS(0.999)PVT(0.001)R 156.6 6.5263e-06 7471570000.0 4043780.0 4069720.0 3518520.0 3471850.0 3545460.0 4122940.0 4010390.0 3641980.0 4657820.0 3991790.0 True False 4022008.737786198 4205178.170002312 4013897.03247591 3911385.854023204 3996953.3154121693 3837930.8621568126 3816392.1145224576 3913763.0411997135 3509962.6725903363 3737030.5446566464 1.0762579245002493 1.125272624815722 1.0740872959187178 1.0466561103215648 1.0695532904132055 1.0270001318679178 1.0212365322994978 1.0472922269248686 0.9392384222304576 1.0 21.833460924973412 2.819912476961384 0.4472490676261842 0.9857330164131808 1.1105855438593688 0.6493769569954185 0.028349639198124523 0.81363648493002 0.3286619214565222 0.02651986612342315 0.04184124508196574 660.560312372309 -2.819912476961384 0.12485252744618802 KIPIIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KIPIIIR 7 1 P61218;U3KQB0;U3KPY1 P61218 POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2 0 105.12 0.031625 0.0 272940.0 338570.0 303720.0 315530.0 318230.0 365320.0 327480.0 339190.0 403180.0 374020.0 False True 271470.52136648475 349839.09778011334 346481.136018435 355476.06564798014 358754.7042030136 340066.2882707791 311638.5413049137 364502.0801719204 303821.6913352106 350149.72338536807 0.7752984030426022 0.9991128777648273 0.9895228037553082 1.0152116135095444 1.0245751466956754 0.9712025044112592 0.8900151006600405 1.0409891992710685 0.8676907935204342 1.0 18.41761242220093 4.741758103552542 24.878004065398553 0.9803814089844876 0.7752983222874629 0.5623518418737061 0.053486778520522485 198.5950393643964 1545088.269038484 0.012085337971048734 0.08645389348704938 55177.00248599728 -4.741758103552542 -0.20508308669702469 KIPNPDFFEDLEPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 KIPNPDFFEDLEPFR 15 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 0 ;;; 205.68 6.861e-09 2472860000.0 697735.0 1150941.0 1353584.0 998525.0 1355601.0 1482020.0 1155414.0 923250.0 1372670.0 1134677.0 False True 693978.472285647 1189249.375426472 1544156.8616369602 1124938.162618925 1528228.7520733727 1379571.4456998277 1099522.2107098915 992147.6031685052 1034393.8713356395 1062260.9424141461 0.6533031994083088 1.1195454223551942 1.4536511698600476 1.0590036004358172 1.4386566342166787 1.2987123884688316 1.0350773212192699 0.9339961242608639 0.9737662659278665 1.0 20.018706774340696 2.0556745260151104 6.311364539810166 0.9671027820646385 1.1876560617850733 0.15468832209939332 0.21334126304739628 0.34304126653747613 28.642128720313764 0.08294201069277965 0.060496170957498506 113.6775031441161 -2.0556745260151104 0.22055327972043481 KIPSVEDSLGEGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIPSVEDSLGEGSR 14 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 145.55 1.371e-05 1315160000.0 378220.0 451890.0 438530.0 373380.0 370120.0 490470.0 439870.0 450830.0 581400.0 462300.0 False True 376183.7055441924 466930.88547672686 500271.2122289097 420649.8697164866 417252.5881268868 456564.96334219154 418591.80763342 484473.2238683535 438121.76036086027 432795.61820505763 0.8691948109464394 1.0788715639341246 1.155906370548979 0.9719365262085061 0.9640869051710071 1.0549204847214326 0.96718125144024 1.1194041794545415 1.0123063680216815 1.0 18.72332636725719 KIQALQQQADEAEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 KIQALQQQADEAEDR 15 1 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A590UJB9;A0A590UK79 P67936 TPM4 Tropomyosin alpha-4 chain 0 ;;; 283.1 1.1542e-33 6569490000.0 3701660.0 3719320.0 3727500.0 3620320.0 3593500.0 4411550.0 4240470.0 3584960.0 4836190.0 4690880.0 False True 3681730.673853093 3843115.3178235795 4252299.59998919 4078652.140800228 4051110.9246567893 4106589.9321716824 4035342.2659314955 3852487.9192580185 3644375.776125881 4391504.022335585 0.8383757945176593 0.8751250820395812 0.9683014243779832 0.9287597415500101 0.9224882646247103 0.9351215235794379 0.9188975452162588 0.877259339776058 0.8298696204285041 1.0 22.06628369449556 4.469797099163037 24.773140037606264 0.9169807278462171 0.8475630983439765 0.2739640439838992 0.04390716852939957 177.10531687074047 599040.9925796129 0.01073292500295659 0.029535276424368217 29498.307542482515 -4.469797099163037 -0.06941762950224062 KIQEESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KIQEESLR 8 1 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 166.33 0.00051168 300340000.0 145100.0 149980.0 170310.0 132390.0 98404.0 142370.0 178440.0 112400.0 270920.0 164550.0 False True 144318.7977221254 154971.9936351754 194288.1676389426 149150.5604257473 110935.16611379613 132528.29700293147 169808.17549300354 120787.85875563521 204155.39614200933 154048.2781216572 0.9368413557219504 1.0059962728878327 1.2612160941228214 0.9682066053861245 0.7201324640979553 0.8603036568722263 1.102304923907687 0.7840909371297542 1.3252689262828423 1.0 17.233023031145596 3.499093192920305 24.873822960037188 0.9391095872617795 1.0706316834326521 0.05335932869369675 0.17777838397514506 1698.5198554393498 1922842.9737769421 0.04633606096851013 0.07108785369756485 3155.681711515192 -3.499093192920305 0.13152209617087263 KIQNDAGVR ddPTM_BT-474_Trastuzumab_2h_R1 5 KIQNDAGVR 9 1 A0A087WTP3;Q92945;M0R0I5;Q96AE4;E9PEB5;Q96AE4-2;Q96I24;Q96I24-2 A0A087WTP3;Q96AE4;Q96I24 KHSRP;FUBP1;FUBP3 Far upstream element-binding protein 2;Far upstream element-binding protein 1;Far upstream element-binding protein 3 0 ;;;; 182.71 7.3776e-05 1957150000.0 1735120.0 2090880.0 2112340.0 1811950.0 1608990.0 1838710.0 2094110.0 1697890.0 2539960.0 1976630.0 False True 1725778.3067099547 2160473.676836348 2409739.1112115793 2041342.6842165804 1813885.3392691012 1711604.3055577714 1992809.8990229408 1824595.1735107212 1914020.8917202766 1850479.7811219154 0.932611274284577 1.1675208229113903 1.302223961480192 1.1031423877427873 0.9802243492600455 0.9249516384988837 1.076915251575855 0.9860119478876441 1.0343376411061553 1.0 20.819467941744527 3.3595563771060117 5.000618344096063 1.0010546037116328 1.1469914787593083 0.31106794898718715 0.0917146692496771 0.23721793017078463 9.394962665526918 0.026000231287132955 0.035473930119337915 2288.5287732709726 -3.3595563771060117 0.1459368750476755 KIQS(ph)LGDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIQSLGDSK 9 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 1 KIQS(1)LGDSK;KIQS(1)LGDSK 99.844 0.0031006 840660000.0 2821700.0 2154000.0 1858150.0 2007510.0 1555990.0 2262700.0 2541300.0 2443100.0 3430100.0 2835400.0 True False 2806508.2807203387 2225694.587879503 2119761.368670669 2261660.5601653596 1754136.1034247149 2106284.8748228746 2418367.6102912454 2625416.5278104288 2584797.8159851856 2654442.3444919316 1.057287338165001 0.8384791602265929 0.7985712603889303 0.8520285116979056 0.6608303650160696 0.7934943018044809 0.911064282601372 0.9890651922646831 0.9737630283621488 1.0 21.33997737523528 1.9969447999489984 3.4619921462098637 0.9827974072326195 0.8255660193257509 0.3599845993804458 0.09176840328554227 0.26766195714426083 6.558317556647581 0.04415920714509137 0.026815336104511797 99.29898285976034 -1.9969447999489984 -0.15723138790686864 KIQSLGDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIQSLGDSK 9 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 135.66 0.00034396 1293210000.0 2896700.0 3097400.0 3135800.0 2511700.0 1986850.0 2739100.0 3194300.0 2543800.0 5336100.0 3004500.0 False True 2881104.489053622 3200495.086582158 3577293.3831377886 2829680.9624695997 2239863.5705174142 2549752.464147846 3039779.505589003 2733631.2731546685 4021089.655076683 2812750.2377181356 1.0243015716144563 1.1378525699383049 1.2718133786524517 1.0060192776892978 0.7963250844250288 0.9064979997002335 1.0807143360354123 0.9718713153046774 1.4295935704333356 1.0 21.423550021442473 -0.3760273296936787 6.977806550074076 1.0000012255713664 1.0567840392813548 0.009772326369001716 0.171358230722086 0.0 0.0 0.16698413386789648 0.039358537802850625 0.420700153334509 0.3760273296936787 0.05678281370998839 KIQVLQQQADDAEER ddPTM_BT-474_Trastuzumab_2h_R1 8 KIQVLQQQADDAEER 15 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;Q5VU61;P06753-3;P06753-4 P06753-2;P06753-3 TPM3 Tropomyosin alpha-3 chain 0 ;;;;;;; 323.16 1.2659e-56 27193740000.0 8220070.0 8669800.0 8339560.0 8739980.0 8199030.0 9696770.0 10136960.0 8429640.0 10600740.0 9938310.0 False True 8175814.056455629 8958369.051995218 9513697.55924502 9846460.571869655 9243127.871041799 9026455.11364131 9646596.51785226 9058702.541644583 7988329.669638422 9304038.547184732 0.878738196858558 0.9628473706942983 1.0225341942638155 1.0582996321365254 0.9934533078475515 0.9701652747744243 1.0368182020023102 0.9736312350496028 0.8585873359322631 1.0 23.149425643318995 -1.6380911845625135 7.01773265993556 1.0000591661333555 0.9794952616395682 0.007070380674225607 0.06059086186417549 5.62117204088363e-05 2.8988903425939054e-06 0.058795013668906014 0.013818254645766357 0.023009586569152158 1.6380911845625135 -0.02056390449378731 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 KIS(0.988)ENS(0.012)YSLDDLEIGPGQLSSSTFDSEK;KIS(0.764)ENS(0.204)YS(0.031)LDDLEIGPGQLSSSTFDSEK;KIS(0.848)ENS(0.138)YS(0.014)LDDLEIGPGQLSSSTFDSEK;KIS(0.256)ENS(0.256)Y(0.232)S(0.256)LDDLEIGPGQLSSSTFDSEK;KIS(0.916)ENS(0.083)YSLDDLEIGPGQLSSSTFDSEK;KIS(0.46)ENS(0.223)YS(0.317)LDDLEIGPGQLSSSTFDSEK 337.07 2.386599999999999e-96 16163742000.0 2800687.0 1878886.0 1715872.0 1639505.0 1727375.0 2629988.0 2509129.0 2537077.0 3685538.0 2495288.0 True False 2785608.412377575 1941423.5846994277 1957451.862973214 1847066.1648977655 1947345.9672962322 2448183.1198858283 2387752.8444664017 2726406.568755968 2777286.543579021 2336036.583516463 1.1924506799394237 0.8310758480404361 0.8379371610810301 0.7906837495315914 0.8336110748594825 1.0480071832610385 1.022138463633172 1.167107821852634 1.1888882918941017 1.0 21.155631437054307 2.4212539464646508 2.053566001059881 1.1208293968884244 0.8860652013131293 0.37404831354464696 0.11971493592135418 0.3077440658001196 2.6484501206833673 0.05052260817919063 0.03945414877285829 263.7873387478259 -2.4212539464646508 -0.23476419557529515 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEKNESR ddPTM_BT-474_Trastuzumab_2h_R1 8 KISENSYSLDDLEIGPGQLSSSTFDSEKNESR 32 2 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 KIS(0.998)ENS(0.002)YSLDDLEIGPGQLSSSTFDSEKNESR;KIS(0.885)ENS(0.114)YS(0.001)LDDLEIGPGQLSSSTFDSEKNESR;KIS(0.913)ENS(0.081)YS(0.006)LDDLEIGPGQLSSSTFDSEKNESR;KIS(0.999)ENS(0.001)YSLDDLEIGPGQLSSSTFDSEKNESR;KIS(0.994)ENS(0.006)YSLDDLEIGPGQLSSSTFDSEKNESR;KIS(0.563)ENS(0.337)YS(0.099)LDDLEIGPGQLSSSTFDSEKNESR;KIS(0.685)ENS(0.282)YS(0.034)LDDLEIGPGQLSSSTFDSEKNESR;KIS(0.486)ENS(0.486)YS(0.027)LDDLEIGPGQLSSSTFDSEKNESR 282.51 4.6728999999999996e-74 9197077000.0 2666143.0 2146775.0 1906022.0 1980100.0 2010275.0 2987044.0 3068564.0 2706531.0 4491225.0 2991257.0 True False 2651788.782324336 2218229.1081221104 2174373.3301597843 2230780.4569757725 2266271.605416564 2780556.679025241 2920125.8362671644 2908506.0867059394 3384422.778081701 2800352.417316042 0.9469482362030367 0.7921249819864247 0.7764641752639768 0.7966070424499758 0.809280857438879 0.9929309831975457 1.0427708377740248 1.0386214494722616 1.2085703060636395 1.0 21.417176967466013 2.5669788761638648 2.3352697552991177 1.0726489121163818 0.8163967482656296 0.7507860932454964 0.06792349773966075 0.14610799505742364 1.580490779903365 0.025276386588445037 0.02248101983771221 368.95965214645776 -2.5669788761638648 -0.2562521638507522 KIS(ph)LEDIQAFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KISLEDIQAFEK 12 1 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 1 KIS(1)LEDIQAFEK;KIS(1)LEDIQAFEK;KIS(1)LEDIQAFEK;KIS(1)LEDIQAFEK 178.66 1.3298e-05 1133740000.0 1928240.0 1306830.0 1201567.0 1292484.0 1196734.0 1530085.0 1587789.0 1597095.0 2589850.0 2190980.0 True False 1917858.570087603 1350327.0465545824 1370737.1893924114 1456112.3418786286 1349130.9813018548 1424313.8253826674 1510981.5801269913 1716278.338784082 1951616.1697120268 2051149.7806076484 0.9350163445984144 0.6583268853991497 0.668277471665835 0.7099005424397913 0.6577437659877661 0.6943977659986964 0.7366510210089906 0.8367396447643324 0.9514742356522911 1.0 20.96800141455492 1.4203884141220326 1.692834498637302 0.9973288143780625 0.7115342459969197 0.6395406126701895 0.07622047943766994 0.20433389195959784 1.0841417907608633 0.0657172742011749 0.020768958955591978 26.326214416024232 -1.4203884141220326 -0.2857945683811428 KIS(ph)PPSYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KISPPSYAR 9 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 KIS(0.967)PPS(0.033)YAR;KIS(0.999)PPS(0.001)YAR;KIS(0.957)PPS(0.043)YAR;KIS(0.71)PPS(0.289)Y(0.001)AR 135.26 0.00013827 6482100000.0 840890.0 808380.0 777640.0 726590.0 687640.0 863600.0 855580.0 735480.0 1062750.0 899520.0 True False 836362.7416716618 835286.43962397 887124.9526319496 818576.2195010496 775206.878038401 803901.364695733 814192.3267670029 790365.252291767 800849.502620406 842111.8634821823 0.993172971359473 0.9918948726954293 1.0534526244098208 0.9720516418284249 0.9205509524980147 0.9546253883320838 0.966845810009456 0.9385513808385979 0.9510013305225816 1.0 19.683652363514227 3.488612673339312 24.438121876561752 0.9516083196824199 1.0110800528890234 0.513473657163449 0.02490506014479519 289.68780032112653 616061.0927881345 0.006402812188215676 0.00932276689476691 3080.439426896017 -3.488612673339312 0.05947173320660348 KIS(ph)TEDINKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KISTEDINKR 10 2 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 KIS(0.974)T(0.026)EDINKR 54.524 0.071247 194690000.0 210110.0 177860.0 155390.0 145340.0 144980.0 218040.0 201730.0 190040.0 304070.0 234270.0 True False 208978.79110541558 183779.9625813595 177267.5613259073 163740.0290979539 163442.34363621575 202967.4080109516 191971.54921656352 204221.7498035667 229136.022829251 219318.68803136243 0.95285446480298 0.8379585170374495 0.8082647352904015 0.7465849379626929 0.7452276187829631 0.9254451129213731 0.8753086704089335 0.9311643783605121 1.044762873998611 1.0 17.74266922298031 1.7143396090097078 1.1974354643059304 1.0222450598431205 0.8229479188317957 0.5724812376234696 0.06338617121579279 0.3356678704975114 0.9052048297442147 0.05609749567436649 0.0216191692798849 51.801174773584194 -1.7143396090097078 -0.19929714101132479 KIS(ph)YSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KISYSR 6 1 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 KIS(0.995)Y(0.001)S(0.005)R 69.812 0.056668 105850000.0 375410.0 397000.0 380510.0 375650.0 386320.0 390950.0 375600.0 369660.0 530290.0 454340.0 True False 373388.83427197195 410213.9050084325 434082.50054779 423207.251483738 435515.56210196397 363924.5466973103 357430.7930686626 397245.9062954457 399607.1350219478 425343.6322199561 0.877852178774086 0.9644294023339237 1.0205454311898923 0.9949772828969653 1.0239146165864021 0.8556012577358054 0.8403341815725737 0.9339411153803747 0.9394924591589999 1.0 18.698269330243672 2.741122795282435 24.998574680058475 0.905747839540783 0.9791727130085 0.22647997626917593 0.05661907835178227 306.4988769402624 2990452.727415105 0.018028388809588885 0.018333950544407993 550.9634574209688 -2.741122795282435 0.07342487346771698 KISELDAFLKEPALNEANLSNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KISELDAFLKEPALNEANLSNLK 23 2 Q06323;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 ; 288.0 4.212499999999998e-53 826040000.0 822360.0 762770.0 750890.0 700860.0 684360.0 1025360.0 1027580.0 928860.0 1604750.0 1131270.0 False True 817932.5051327856 788158.3383457983 856608.7851471177 789588.804139206 771509.189480484 954479.276637815 977872.0296631951 998176.2498555091 1209280.8650483147 1059071.3800710263 0.7723110269280729 0.7441975613512857 0.8088300762972837 0.7455482406542346 0.7284770450776821 0.9012416864421388 0.923329671695608 0.9425013919161584 1.1418313135486813 1.0 20.014368397751742 2.0964211845516716 1.0408552848942436 1.0502308241476466 0.7592161095569206 0.8292333354228394 0.052999460006245315 0.20506306716272632 0.4134166325839306 0.03986953235176367 0.020049780695176125 124.85938301232714 -2.0964211845516716 -0.2910147145907259 KISENS(ph)YSLDDLEIGPGQLSSSTFDSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 KIS(0.259)ENS(0.298)Y(0.145)S(0.298)LDDLEIGPGQLSSSTFDSEK;KIS(0.242)ENS(0.375)Y(0.007)S(0.375)LDDLEIGPGQLSSSTFDSEK 80.593 0.0034921 91156000.0 66138.0 78508.0 54814.0 43998.0 48940.0 81130.0 63254.0 63847.0 146624.0 66811.0 True False 65781.92035662266 81121.09132091173 62531.334748171 49568.14228878342 55172.21890989372 75521.67405947752 60194.16236625445 68611.58734849672 110490.47986094045 62547.06478022509 1.0517187431219044 1.2969608023326302 0.9997485088691315 0.792493500101941 0.8820912556609211 1.207437540432025 0.9623818891863566 1.0969593471665036 1.766517425704574 1.0 15.93265456247974 1.4329056976337935 14.863239698681777 1.39953964200682 1.0313307151040592 0.2896494362682659 0.21939941336411056 1.710553579683376 573.5252107650894 0.123774600433455 0.051796221951923106 27.096032068740186 -1.4329056976337935 -0.36820892690276086 KISSDLDGHPVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 KISSDLDGHPVPK 13 1 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 ;;; 133.16 7.1695e-05 5047320000.0 7693810.0 7973880.0 8478990.0 7187220.0 6275920.0 8756540.0 9670470.0 8040560.0 13985410.0 9314860.0 False True 7652387.381822647 8239285.77548775 9672758.091297751 8097121.315077739 7075121.211707801 8151221.000477976 9202672.421317115 8640587.416336384 10538893.10039281 8720377.659947144 0.8775293548317528 0.9448313016683832 1.109213209391711 0.9285287439175905 0.8113319729492867 0.9347325675947138 1.0553066369573831 0.9908501389822555 1.2085363170448615 1.0 23.055959185557413 1.8805581947981926 1.7029058226737097 1.0832511333010395 0.9393003834430804 0.3146908403452089 0.09054389829458243 0.47451082345358114 2.58275638865686 0.06339280540069449 0.028401653060584287 75.95531948187019 -1.8805581947981926 -0.14395074985795908 KISSIQSIVPALEIANAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KISSIQSIVPALEIANAHR 19 1 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 154.11 2.5394e-08 1069530000.0 652870.0 894340.0 955030.0 860890.0 1119830.0 1398320.0 908890.0 791170.0 1225900.0 1032340.0 False True 649355.0204606764 924107.5662600541 1089489.9227304293 969878.5857309593 1262433.7127475734 1301657.429691219 864923.5184030263 850211.1228798572 923793.3712183996 966455.1773692601 0.6718935711310002 0.9561825399658178 1.1273051748722336 1.0035422319025884 1.3062516941385547 1.346836832344772 0.8949442650381282 0.8797212150015843 0.9558574394862387 1.0 19.882343298558162 KIT(ph)PPS(ph)SPHSLTSTLVSLGHEEALEMAGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KITPPSSPHSLTSTLVSLGHEEALEMAGSK 30 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 2 KIT(0.788)PPS(0.508)S(0.463)PHS(0.207)LT(0.011)S(0.011)T(0.011)LVS(0.001)LGHEEALEMAGSK 108.71 0.00027973 350430000.0 181630.0 164570.0 173950.0 175910.0 163000.0 238330.0 229520.0 247110.0 310970.0 227370.0 True False 180652.12426099018 170047.6129653344 198440.64799949565 198180.18796354116 183757.08382330756 221854.80806847414 218417.24074845432 265550.6029991547 234335.610284514 212859.0519387495 0.8486936431201108 0.798874238217813 0.9322631393500579 0.9310395125717641 0.8632805706387526 1.0422615625118596 1.02611206222653 1.2475419794482936 1.1008956779152828 1.0 17.69953891719663 2.486962232744601 1.5891860218552794 1.1363593026869112 0.8715101369755485 0.6636334211630179 0.07357555622781792 0.20404486747464984 1.044301430715071 0.03405447685095573 0.026461395686037434 306.8755110725429 -2.486962232744601 -0.26484916571136274 KITIGQAPTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KITIGQAPTEK 11 1 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 84.46799999999998 0.020636 0.0 556020.0 469290.0 459630.0 421570.0 443030.0 590010.0 644030.0 513230.0 1044000.0 586390.0 False True 553026.4500996296 484910.03395820456 524341.9088244218 474940.71877545404 499447.2444554596 549223.9974341474 612875.8084664826 551529.8287291332 786720.1888832769 548966.0881662632 1.0073963802517008 0.8833150979835056 0.9551444435773899 0.8651549321779064 0.909796169967049 1.0004698091074182 1.116418339270646 1.0046701255653765 1.433094331038179 1.0 19.06635750536955 2.1070510193129084 1.2583434774637836 1.1662701768393597 0.9203299530070084 0.4253254478287598 0.11745712283846715 0.4315944252370828 1.2860230818636982 0.07700861729200315 0.039159595650774405 127.9531609979912 -2.1070510193129084 -0.24594022383235137 KIVDQIRPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIVDQIRPDR 10 2 P17844;P17844-2;J3KTA4;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 P17844;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 ; 169.82 2.5393e-06 9804600000.0 9866000.0 10978800.0 10662700.0 10514500.0 10708600.0 11380800.0 11697700.0 10602300.0 13476400.0 11959900.0 False True 9812882.552215654 11344222.721175263 12163915.47815016 11845634.621924015 12072276.735155037 10594072.083521545 11131837.56144648 11393497.463388538 10155321.794508247 11196608.942614447 0.8764155828348785 1.0131837933536283 1.0863928123678706 1.0579662719878844 1.0782083036952184 0.9461857726583949 0.9942150894525353 1.017584656370799 0.9069997752495358 1.0 23.41655852127608 2.7251854375040616 24.80714471063261 0.9794577888603173 1.0274468456674368 0.13059980961657602 0.06200586841220327 1614.1568997766426 2993798.1056016064 0.02067058297555047 0.019600643097347284 531.1111726626576 -2.7251854375040616 0.04798905680711951 KIVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_BT-474_Trastuzumab_2h_R1 2 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR 122.09 0.00010025 150387000.0 193257.0 236992.0 186824.0 227850.0 232845.0 256414.0 267284.0 226550.0 343590.0 277776.0 True False 192216.52578487116 244880.13545531072 213127.19529668172 256695.78663801338 262496.4305695584 238688.70371363108 254354.4517959648 243456.31139759003 258916.8483701202 260048.09786400164 0.7391575918597774 0.9416724731567798 0.8195683684952069 0.9871088800359484 1.0094149225688134 0.9178636785817178 0.9781054115957638 0.9361972396541478 0.9956498451510571 1.0 17.98841895973794 5.808360394614884 0.7029714501842141 0.9684848562451519 1.7536043237790097e-16 0.6401170703686441 0.05018028786169136 7.3075664592591805 0.8791915697951124 0.017903298040430452 7.9462184222872425 643221.2661710769 -5.808360394614884 -0.9684848562451517 KIVEPEVVGES(ph)DSEVEGDAWR ddPTM_BT-474_Trastuzumab_2h_R1 1 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 KIVEPEVVGES(1)DSEVEGDAWR 173.09 2.9088e-12 123440000.0 93434.0 149400.0 130530.0 143640.0 159710.0 132780.0 178910.0 146670.0 185640.0 174880.0 True False 92930.96172549325 154372.68868579296 148907.489412901 161824.8092722588 180048.12182466537 123601.23113049945 170255.4397974293 157615.2601751691 139891.50944855533 163719.0086776994 0.5676247521657003 0.9429124322985256 0.9095308517659262 0.9884301803392326 1.0997386514788383 0.754959562293853 1.0399246927557304 0.9627181440210998 0.8544610096189174 1.0 17.32086231080579 4.739977541722941 5.611021743450895 0.9530658637683045 0.5541829248866017 0.6122861262520364 0.09136387299091338 0.0914186448041191 11.696999802617105 0.02067678304586745 0.1396704287353598 54951.245668307696 -4.739977541722941 -0.3988829388817028 KIVSWLEYESSFSNEEAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KIVSWLEYESSFSNEEAQK 19 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ; 267.38 1.9764999999999998e-31 317872100.0 298613.0 271017.0 268413.0 256724.0 273739.0 343970.0 336684.0 311944.0 509006.0 382922.0 False True 297005.30078702344 280037.6370117642 306203.2173123809 289225.23207749496 308598.03907183034 320192.16351828567 320397.30866221926 335222.8452995358 383568.29163095966 358483.5901239825 0.8285045925932156 0.7811728199745837 0.8541624379695586 0.806801873350648 0.8608428602411086 0.8931849946256852 0.8937572527417754 0.9351135018024063 1.06997447637227 1.0 18.45154755434418 1.8732670147861759 0.8171815289373707 1.0315633492905936 0.8187739286294897 0.8396125094745499 0.03378729242502038 0.22313817297983127 0.2796751433794351 0.029058948346384925 0.01378522050871777 74.69078343313018 -1.8732670147861759 -0.21278942066110385 KIYEDGDDDMKR ddPTM_BT-474_Trastuzumab_2h_R1 4 KIYEDGDDDMKR 12 2 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ;;; 137.84 4.7877e-05 3668680000.0 3179450.0 3043380.0 2777820.0 2770960.0 2780570.0 3665940.0 3933620.0 3288680.0 5752500.0 4026010.0 False True 3162332.194470105 3144677.0635379422 3168912.910755725 3121763.251887068 3134659.1077703973 3412522.196494532 3743335.7727123303 3534098.001178668 4334873.454550816 3769066.59495943 0.839022637249036 0.8343384188922222 0.8407686176183987 0.8282589795738726 0.8316804781222336 0.9054024678307028 0.9931731579692673 0.9376586781207321 1.15011856260329 1.0 21.84577585527071 2.118923360780751 1.039339259766273 1.0479097662227856 0.8308528342489635 0.7706000988207563 0.0482456846115172 0.24382421861887538 0.4918072233181958 0.03503445260257683 0.017927989456823647 131.49927571482553 -2.118923360780751 -0.21705693197382214 KKAEGGGGGGRPGAPAAGDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKAEGGGGGGRPGAPAAGDGK 21 3 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 149.85 3.3651e-08 654590000.0 617970.0 724880.0 480150.0 440300.0 414230.0 661850.0 661190.0 603350.0 1187900.0 613400.0 False True 614642.9181829209 749007.1926007865 547750.9464613844 496041.9348550237 466979.7351664337 616097.867327317 629205.7137089167 648375.0407492211 895157.9620444878 574252.2868418391 1.0703360391705437 1.3043173005370694 0.9538507011853595 0.8638048924159424 0.8131961262786395 1.0728696801811832 1.095695616937461 1.129076985161048 1.5588235041561667 1.0 19.131325171288267 1.544072734454558 3.5783106274696026 1.2949506032922855 1.0212632501980288 0.23020468481217293 0.1802889695741408 0.2587213407561324 7.380168532110908 0.11881304055122911 0.047696677403653485 35.00037797978814 -1.544072734454558 -0.27368735309425674 KKAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKAENAEGQTPAIGPDGEPLDETSQMSDLPVK 32 2 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8YGP5;A0A2R8Y7R0 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 1 KKAENAEGQTPAIGPDGEPLDETSQMS(1)DLPVK 216.54 4.492899999999999e-36 238240000.0 353530.0 259970.0 263020.0 238740.0 253080.0 424240.0 409090.0 385670.0 591740.0 355290.0 True False 351626.63376087585 268622.9442948167 300050.9297891767 268964.45952143654 285308.2378773168 394913.2873535404 389300.75382443884 414450.6537925783 445913.60590976145 332615.0880209276 1.0571577971795196 0.8076090170567228 0.9020965692641638 0.8086357751290997 0.8577729879149849 1.1872981761088754 1.1704242165946022 1.246036841739728 1.340629520335245 1.0 18.343494087798184 2.7227703901317355 7.349164280242388 1.206431096540258 0.8785631922208826 0.6799375608948817 0.10325967585134993 0.08901523124013574 27.430288024122248 0.03149885889187556 0.030618672396722425 528.1659385894452 -2.7227703901317355 -0.3278679043193754 KKAEPSEVDMNS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKAEPSEVDMNSPK 14 2 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK 177.67 1.0806e-06 903030000.0 1729960.0 1028990.0 830080.0 815640.0 830120.0 1734110.0 1665380.0 1492380.0 3276000.0 1871550.0 True False 1720646.087576627 1063239.3101124098 946948.0488152986 918899.9403705467 935830.8614932767 1614235.0573558558 1584819.2070305885 1603748.973752087 2468673.6961509776 1752106.0766854333 0.9820444723482034 0.6068350108823347 0.5404627387667638 0.5244545136838326 0.534117696380373 0.9213112601090931 0.9045224077007303 0.9153264149314506 1.4089750209765377 1.0 20.740658691109918 2.0490556286761428 1.1462086052691425 1.1448297924200312 0.6334145759768609 0.5603652730607587 0.1782599321032916 0.365937858971855 0.8922454622975864 0.1337349704285477 0.06451825916700867 111.95812811811537 -2.0490556286761428 -0.5114152164431703 KKANEVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKANEVDR 8 2 B1ALA9;P60891;A0A2R8Y7H4;P60891-2;P11908;P11908-2 B1ALA9;P11908 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 0 49.418 0.091126 609800000.0 389940.0 415050.0 385530.0 357420.0 355370.0 362420.0 439800.0 372450.0 565860.0 500430.0 False True 387840.6063664073 428864.6883469765 439809.2729131673 402669.3353529021 400624.2630569864 337366.7584449139 418525.19380084594 400244.1102627785 426411.3851355284 468492.1289603214 0.8278487137598317 0.9154149276717066 0.9387762263780031 0.8595007481694659 0.8551355258540895 0.7201119028266255 0.8933451981992478 0.8543240868336485 0.9101783333731163 1.0 18.837665284102915 0.8972892037969582 2.2886747985800477 0.9999619695439675 0.8589228807684334 0.37937990987323145 0.05576951917098659 0.47676845704621523 5.226609787322916 0.05509669249217298 0.01499936131323923 7.893856074167969 -0.8972892037969582 -0.14103908877553417 KKDEISVDSLDFNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKDEISVDSLDFNKK 15 3 P63151;P63151-2;A0A590UJY3;A0A590UJJ1;E5RFR9 P63151 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 209.67 9.9359e-10 389340000.0 721520.0 475320.0 443330.0 395800.0 394140.0 664880.0 666780.0 659650.0 1200200.0 675920.0 False True 717635.4164884075 491140.7388629925 505747.0105065615 445908.23941771226 444331.39274919336 618918.4105591695 634525.3040530419 708876.432634829 904426.7918560432 632782.2069157739 1.1340954417574638 0.7761607919679788 0.7992434126294556 0.7046788524460906 0.7021869260750814 0.9780907297880932 1.0027546557381313 1.1202534219316054 1.4292860671040113 1.0 19.27134950794651 2.034556542543414 1.5648241806828747 1.2079190369489248 0.8194563788361267 0.49290978565447385 0.1545529360938001 0.3093330608761934 1.420246140378105 0.09802573292311718 0.048861542655844005 108.28206827255397 -2.034556542543414 -0.3884626581127981 KKDELER ddPTM_BT-474_Trastuzumab_2h_R1 5 KKDELER 7 2 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed 0 ;;;; 118.5 0.0028086 8119270000.0 7830230.0 7370970.0 6302940.0 5966480.0 6359110.0 7703790.0 8093050.0 7874930.0 11481050.0 8328100.0 False True 7788072.911700336 7616308.280604549 7190339.165863418 6721835.756243017 7168904.965102049 7171245.130071034 7701558.2530467 8462597.264684282 8651699.06568808 7796593.52795487 0.9989071360172898 0.9768764080487325 0.9222411223673888 0.8621503393939566 0.9194919472713013 0.9197920995058118 0.9878106669832897 1.085422400737122 1.109676813940243 1.0 22.894412491531504 1.9397100950413833 3.21120645088463 1.072514491970042 0.9312948865228289 0.646767001564564 0.043365199257192795 0.1540671817184807 2.9216369611167217 0.022931583098490898 0.012834828679634392 87.03823889090603 -1.9397100950413833 -0.14121960544721313 KKDELS(ph)DYAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KKDELSDYAEK 11 2 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;P46100-3;A0A096LP59 P46100;P46100-3;A0A096LP59 ATRX Transcriptional regulator ATRX 1 KKDELS(1)DYAEK;KKDELS(1)DYAEK;KKDELS(1)DYAEK;KKDELS(1)DYAEK 147.07 2.7939e-05 3773660000.0 6197560.0 3434610.0 3042590.0 2797720.0 3156830.0 5269340.0 5198470.0 5374300.0 9217820.0 5195010.0 True False 6164193.025573649 3548928.9175844067 3470960.2253336334 3151911.065143304 3558833.5885026506 4905082.928492146 4947000.146016105 5775357.556142443 6946211.77345983 4863460.014128175 1.2674501296745306 0.729712777996508 0.7136812506426742 0.6480799792713658 0.7317493262336625 1.008558292705822 1.0171770985358672 1.1874997510754153 1.4282448613294523 1.0 22.213551625781324 2.176950269751361 1.5951754131513818 1.221589297300719 0.803932787702459 0.4159850958560739 0.19244001281783343 0.3502225654334759 1.7345285883412085 0.11059915631510756 0.06324273347034567 150.2969853969889 -2.176950269751361 -0.41765650959825995 KKDQEDDEQQR ddPTM_BT-474_Trastuzumab_2h_R1 3 KKDQEDDEQQR 11 2 Q15276-2;Q15276 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 ;; 139.46 2.1967e-05 160429000.0 89413.0 68320.0 65765.0 60183.0 59380.0 80524.0 90610.0 77600.0 122741.0 89433.0 False True 88931.6103427182 70593.98989968785 75024.14036037266 67802.16162929793 66941.69102716568 74957.56541310698 86226.8481361861 83390.9060448158 92493.12519513638 83725.30937255644 1.0621831201243466 0.8431618877102317 0.8960748060844329 0.8098167941977433 0.7995394884633044 0.8952796469173351 1.0298779279811132 0.996005946944279 1.1047212114029388 1.0 16.35337618137936 2.2704179746791318 4.869248033668818 1.0292153308095353 0.8742982701642855 0.4915504302362982 0.07366459429588425 0.16090230654247392 9.140938080498188 0.026762536782345178 0.021391794085236882 186.38801134453317 -2.2704179746791318 -0.1549170606452498 KKDQVTAQEIFQDNHEDGPTAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KKDQVTAQEIFQDNHEDGPTAK 22 2 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;; 328.18 6.744799999999997e-81 3290640000.0 2459210.0 1977680.0 2072820.0 1841450.0 2025510.0 2970070.0 2868170.0 2420260.0 4089100.0 3062880.0 False True 2445969.886603915 2043505.8832671929 2364655.038725576 2074577.3811918758 2283446.6923616417 2764756.0516927494 2729425.659626585 2600872.091031256 3081396.0961327692 2867404.376136506 0.8530257911859559 0.7126674912941925 0.8246674443287534 0.7235035973499935 0.796346239604447 0.9642016573253392 0.9518802727448469 0.9070475419081382 1.0746290693343337 1.0 21.45131394453687 2.760993857178923 4.616009386316421 0.9669910588040275 0.7754781348921221 0.75362037029753 0.05627598658248383 0.10002900563391158 5.604888605866129 0.0171769345492592 0.01757772067857116 576.7583054526981 -2.760993857178923 -0.19151292391190533 KKDS(ph)VESHPTWVDDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKDSVESHPTWVDDTR 16 2 Q5T9C2-3;Q5T9C2;Q5T9C2-2 Q5T9C2-3 FAM102A Protein FAM102A 1 KKDS(0.998)VES(0.002)HPTWVDDTR 95.48 0.0019506 341630000.0 339600.0 283110.0 265650.0 248220.0 260450.0 331870.0 326050.0 281370.0 445060.0 302670.0 True False 337771.6313331067 292533.14520639123 303051.21092880715 279644.62654943037 293616.76369190484 308928.60803794937 310277.7158680441 302367.25816790975 335380.9264984592 283353.3414711757 1.192050990397326 1.0323970195218233 1.0695169831255906 0.9869113422044377 1.0362212852950357 1.0902592728710605 1.0950204936955272 1.0671032026586078 1.1836138044363806 1.0 18.11224269010278 2.7064559444452176 21.45171052543021 1.0899044322864508 1.057784351279344 0.028381968132814572 0.0645818095824951 390.6964107281858 261053.1730181378 0.020271850553879645 0.019115943007866867 508.69321434129284 -2.7064559444452176 -0.03212008100710695 KKEDDMETK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKEDDMETK 9 2 Q9Y570;Q9Y570-2 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 79.693 0.014747 199480000.0 171600.0 124840.0 121170.0 106800.0 96715.0 137490.0 140280.0 136960.0 258710.0 142890.0 False True 170676.12466655212 128995.22393262638 138229.68277147962 120320.86904954925 109031.0819752834 127985.63991664688 133494.12047835992 147180.65066878803 194954.38703639153 133770.63786571642 1.2758863035241164 0.9643014789397674 1.033333510080436 0.8994564948575 0.8150598944196751 0.9567543517668151 0.9979328992388145 1.1002463097808732 1.457378017678988 1.0 17.029401959219065 1.5268918722950067 4.171405806813965 1.2432339355062025 0.9824852303272897 0.2714100286747221 0.1524280283500754 0.1973280683370027 7.531838377756827 0.09234505112644877 0.03823377293025802 33.64277974281275 -1.5268918722950067 -0.2607487051789128 KKEEEDDDMKELENWAGSM ddPTM_BT-474_Trastuzumab_2h_R1 1 KKEEEDDDMKELENWAGSM 19 3 Q9H444 Q9H444 CHMP4B Charged multivesicular body protein 4b 0 99.092 0.0010415 130740000.0 835500.0 413090.0 319030.0 311850.0 320100.0 588390.0 599390.0 536020.0 1095400.0 494480.0 False True 831001.7608327774 426839.45093182195 363946.6509415296 351330.17802529887 360862.8376186547 547715.9842210771 570395.2158078428 576020.5342544089 825453.3476079913 462921.8630543733 1.7951231668986232 0.9220550701915904 0.7861945610868277 0.7589405600919582 0.7795329329180309 1.1831715629225836 1.232163052408795 1.2443148190362125 1.783137530298577 1.0 18.820409174839956 2.243080907455407 1.9449138110160225 1.3529406331470308 0.9815091181004488 0.1494975653454792 0.3364240771630296 0.582983628102919 4.447224594701665 0.16571040950421134 0.10798901933670856 175.01727089568433 -2.243080907455407 -0.371431515046582 KKEEEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEEEQER 8 2 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 0 ; 113.22 0.0016258 48675000.0 74176.0 62950.0 59385.0 49443.0 50982.0 56186.0 79058.0 78846.0 152102.0 96907.0 False True 73776.64465772826 65045.252695921445 67745.89181632678 55702.478730495 57474.25550601144 52301.99406761746 75233.66250911163 84729.88889187553 114618.50016237961 90722.31229374318 0.8132138918467182 0.7169708426887991 0.7467390336897199 0.6139887456807758 0.6335184151823614 0.5765064044914622 0.8292740849188017 0.9339476337147887 1.2633992373481917 1.0 16.46916979112813 1.6576029417224871 2.188326230611392 1.1246188020827874 0.68633779664331 0.7670948825920128 0.09580376307369712 0.12224530585189211 1.2714670099877545 0.0671643177278312 0.02634679915069315 45.45722726499441 -1.6576029417224871 -0.43828100543947746 KKEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KKEEER 6 2 Q13442;F8WFC5;Q8NFW9-5;Q8NFW9-2;Q8NFW9 Q13442;Q8NFW9-5 PDAP1;MYRIP 28 kDa heat- and acid-stable phosphoprotein;Rab effector MyRIP 0 ;; 69.998 0.051759000000000006 373760000.0 518010.0 389340.0 353886.0 371300.0 382420.0 701500.0 483230.0 464080.0 687700.0 506010.0 False True 515221.0917163217 402298.9465390001 403710.0727677463 418306.5419297528 431118.92021907517 653006.9561533772 459854.3187821343 498712.0061504905 518225.54970788304 473716.00858304347 1.0876159605782085 0.8492407671472563 0.8522196114404165 0.8830323112384806 0.9100788497914971 1.3784777046201588 0.9707383969514317 1.0527657860713084 1.093958279472071 1.0 18.853662901080888 2.9297213428500744 24.999997193912225 1.0932200942621755 0.9069250271428733 0.36171307097672944 0.12093013957156142 171.45239058379582 60989.71657663112 0.03598480414374477 0.03816766254995412 850.5920961369479 -2.9297213428500744 -0.18629506711930222 KKEEMLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEEMLKK 8 3 H0Y993;A0A494C028;P35659;B4DFG0;P35659-2;H0Y8X0;D6RDA2 H0Y993 DEK Protein DEK 0 ; 87.913 0.0065654 1019670000.0 658300.0 661310.0 482040.0 593460.0 649400.0 785960.0 801840.0 797210.0 1481240.0 925660.0 False True 654755.7859440051 683321.303579664 549907.0420332097 668591.9751511752 732097.2407046375 731628.4351508317 763051.9358737392 856701.8583503542 1116208.2495991057 866583.5863026035 0.7555598747693913 0.7885232473593772 0.6345689564459244 0.7715262390369215 0.8448085704325762 0.8442675890878845 0.8805289506225289 0.9885969130866984 1.2880560712689697 1.0 19.724979385655303 1.8318793406708374 1.2701488197501742 1.1362749646577364 0.758716898905512 0.732114810805039 0.08830306032069037 0.22024368357194138 0.6619183871230083 0.06907696018959052 0.028536321816989212 67.90149567881923 -1.8318793406708374 -0.3775580657522244 KKEEMNR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEEMNR 7 2 Q99543;Q99543-2;H7C3L7 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 0 ; 80.23899999999998 0.017128 332890000.0 241112.0 260660.0 222160.0 235480.0 226498.0 204174.0 290760.0 270820.0 386720.0 322230.0 False True 239813.87978206167 269335.9105277028 253438.19695066352 265291.7438556914 255341.17774117505 190059.9319538981 276694.8279889359 291029.96359609533 291418.0377825104 301665.0055250175 0.7949675149250071 0.8928311391603108 0.8401312459480672 0.8794249879729268 0.846439504299743 0.6300363929290306 0.9172254750178148 0.964745523232259 0.9660319640832277 1.0 18.202587821621716 2.0125106382023548 24.995003413860704 0.9650029142763006 0.8190658732529016 0.5334871477968803 0.06914940295941374 189.39680571797481 378394.3588108786 0.026591765215377147 0.019627054173543847 102.92257381469666 -2.0125106382023548 -0.145937041023399 KKEEPSQNDIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 KKEEPSQNDISPK 13 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK 174.87 1.0034e-05 8766010000.0 6567740.0 3989740.0 3664590.0 3003640.0 3195800.0 6019270.0 5991820.0 5493020.0 10679300.0 5854590.0 True False 6532380.017584509 4122536.0840512393 4180532.41881271 3383900.5160298524 3602766.1870093644 5603172.03273747 5701972.775624791 5902937.0453903815 8047529.610288499 5480945.05383333 1.191834611262124 0.7521578931297569 0.7627393410720069 0.6173936215002154 0.6573257260606212 1.0223003474225043 1.0403265713523029 1.0769925601173311 1.4682740898232722 1.0 22.38599324114638 2.2506277634585525 1.619430198310314 1.1827012746950383 0.7876286229345909 0.43109484565748457 0.18913693000641874 0.35844866589997154 1.8683559753381924 0.10304447575368533 0.06371027921404869 178.08517338657407 -2.2506277634585525 -0.39507265176044737 KKEGETVEPYK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKEGETVEPYK 11 2 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 88.021 0.0074747 588580000.0 823680.0 756060.0 625940.0 654830.0 705640.0 925850.0 886930.0 910880.0 1498500.0 958680.0 False True 819245.3983994514 781225.0000520784 714066.9112319876 737731.4108587679 795499.0713440408 861848.1687164716 844025.8074983731 978854.4909549203 1129214.753871257 897496.2216327579 0.9128120861712935 0.8704493469965203 0.7956210778613987 0.821988319367696 0.8863536716587395 0.9602805537705396 0.9404226860842829 1.0906502638798328 1.2581832955429586 1.0 19.77554633978681 1.9723262903665968 1.388438951335117 1.1378924348011634 0.8576258246431526 0.6978111652211685 0.07152739036885658 0.22058217410807177 0.7901845035508239 0.04998553742450985 0.023072262938522003 93.82666725666122 -1.9723262903665968 -0.2802666101580108 KKEIQNGNLHES(ph)DSESVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKEIQNGNLHESDSESVPR 19 2 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 KKEIQNGNLHES(0.877)DS(0.109)ES(0.015)VPR 58.974 0.038869 84893000.0 36448.0 54415.0 63649.0 56179.0 79784.0 99783.0 67681.0 54277.0 98193.0 71494.0 True False 36251.76801775347 56226.17038043786 72610.22595297435 63291.255639837356 89944.01948318258 92885.23607391659 64407.01146347221 58327.425353021456 73994.65086878896 66931.1917109072 0.5416274100472327 0.8400593048349261 1.0848488439679416 0.9456167449282593 1.3438281492383048 1.387772034227502 0.9622869370332212 0.871453560918987 1.1055331449705936 1.0 16.030391081288936 4.6264675828375035 1.7402076157773527 1.084600721901486 0.4241636123481924 0.54346081148903 0.15742293615424532 0.6263638635045351 2.2647073930882287 0.046859834633707236 0.6373870073013398 42312.392518228655 -4.6264675828375035 -0.6604371095532935 KKEPAITSQNS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 16 KKEPAITSQNSPEAR 15 2 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITS(0.003)QNS(0.997)PEAR;KKEPAIT(0.001)S(0.002)QNS(0.997)PEAR;KKEPAITSQNS(1)PEAR 298.31 1.9222999999999999e-44 125428063000.0 28019669.0 25075799.0 24426115.0 22520197.0 22921193.0 28768291.0 28828101.0 28860282.0 37273395.0 29265540.0 True False 27868814.21538185 25910431.811074402 27865099.67640244 25371251.631152205 25840071.063995156 26779606.75644278 27433575.620589737 31013982.792382535 28087866.240154218 27397788.18171064 1.017192118960378 0.9457125385169186 1.0170565409000334 0.9260328411506135 0.9431444207326437 0.977436812739485 1.0013062163500843 1.1319885600504744 1.0251873638071352 1.0 24.70755609359889 1.9614751287785057 8.102181097276514 1.0671915673872316 0.9703413703451595 0.4081821653040466 0.04268120294331465 0.233592714507836 44.76733533101672 0.017194715912068618 0.010979592693773415 91.51138509455696 -1.9614751287785057 -0.0968501970420721 KKEPAITSQNSPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKEPAITSQNSPEAR 15 2 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 0 126.63 4.6759e-05 408080000.0 717980.0 622790.0 637010.0 587280.0 637210.0 706590.0 797330.0 746390.0 999490.0 835360.0 False True 714114.4754550772 643519.1886654942 726695.4710098234 661629.5877848251 718354.916460428 657745.0964339484 758760.1018036124 802089.4118916227 753179.0819798352 782046.6096123231 0.9131354406217281 0.8228655181875926 0.9292227113804145 0.8460232160750736 0.9185576762701287 0.8410561318845259 0.9702236317855092 1.0256286543959767 0.9630872031440707 1.0 19.576895068481814 2.107897464985409 5.310980481449626 0.9987422714665978 0.8789533095735124 0.6976146899058095 0.03611002193086408 0.10096005391416309 4.350362530969249 0.012555562689295882 0.009156459935373739 128.2027865789169 -2.107897464985409 -0.11978896189308541 KKEPELFQTVAEGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEPELFQTVAEGLR 15 2 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1 A0A024R571 EHD1 EH domain-containing protein 1 0 ; 189.81 1.3646e-07 916760000.0 1138390.0 1166530.0 943270.0 910440.0 993330.0 1264100.0 1165770.0 1064630.0 1572140.0 1343630.0 False True 1132261.0347270188 1205357.245867725 1076074.2169501816 1025701.6106504846 1119824.687571818 1176715.7423713238 1109377.2514261308 1144078.096681601 1184707.1625967026 1257878.3830604823 0.9001355377235833 0.9582462518634188 0.8554676123235683 0.8154219235049578 0.8902487733728497 0.9354765597515988 0.8819431722222297 0.909529976894905 0.9418296542422882 1.0 20.262561012497518 0.9212807872121 1.0702380600749963 1.0004629724410934 0.8890569185597664 0.4597650743812982 0.036948118598579036 0.589808371764752 1.3804915414422074 0.037208525328264755 0.011976401466265838 8.342203641730755 -0.9212807872121 -0.11140605388132696 KKEPEPNFQLLDNPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEPEPNFQLLDNPAR 16 2 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ; 217.37 8.054899999999998e-15 1621890000.0 1661750.0 1523430.0 1458200.0 1325670.0 1506990.0 1831960.0 1699310.0 1708100.0 2159700.0 1930730.0 False True 1652803.322637782 1574136.4466171167 1663501.885098385 1493499.686075994 1698896.2438704704 1705320.9171699819 1617107.8833054022 1835567.0955560538 1627470.8734973317 1807509.158418883 0.9144093765386894 0.8708871207015576 0.920328329928647 0.8262750310944104 0.9399101719388123 0.9434646066533404 0.894660962448437 1.0155229847696674 0.900394261305409 1.0 20.785571526471262 2.377836534728362 0.8937657710283494 0.9724311120663554 0.886666403881358 0.33507994028870536 0.043653164473779114 0.6249126563916841 0.981021713784822 0.030032409973400398 0.019537853080188825 238.6912697303952 -2.377836534728362 -0.08576470818499737 KKEPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEPPR 6 2 R4GMQ1;O60341;O60341-2;O75494-2;O75494 R4GMQ1;O75494-2 KDM1A;SRSF10 Lysine-specific histone demethylase 1A;Serine/arginine-rich splicing factor 10 0 ; 86.866 0.02986 1603100000.0 2022130.0 2725400.0 1828810.0 2341500.0 2612800.0 2336800.0 3339500.0 3183400.0 4195800.0 3645700.0 False True 2011243.0767597635 2816113.291460908 2086290.551698518 2637933.659920595 2945524.592721095 2175262.516235512 3177955.626871136 3420961.4729776587 3161801.310839516 3413028.304759199 0.5892840308283537 0.8251069255810332 0.6112725607312868 0.7729011963487689 0.8630237811429202 0.6373408955332366 0.9311248964562431 1.002324378091854 0.9263917637104367 1.0 21.702620948298428 2.131226946946524 5.8592308106415585 0.973578539271977 0.726434217975098 0.6652928903173672 0.08647111417544158 0.12342839784450582 5.955804974862482 0.031324772875221334 0.0230073948049131 135.27792931680756 -2.131226946946524 -0.24714432129687902 KKEPPRAS(ph)PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR ddPTM_BT-474_Trastuzumab_2h_R1 7 KKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR 47 3 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 KKEPPRAS(1)PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR;KKEPPRAS(0.996)PPGGLAEPPGS(0.004)AGPQAGPTVVPGSATPMETGIAETPEGR;KKEPPRAS(0.997)PPGGLAEPPGS(0.003)AGPQAGPT(0.001)VVPGSATPMETGIAETPEGR;KKEPPRAS(0.957)PPGGLAEPPGS(0.043)AGPQAGPTVVPGSATPMETGIAETPEGR;KKEPPRAS(0.994)PPGGLAEPPGS(0.006)AGPQAGPTVVPGSATPMETGIAETPEGR;KKEPPRAS(0.998)PPGGLAEPPGS(0.002)AGPQAGPTVVPGSATPMETGIAETPEGR;KKEPPRAS(0.982)PPGGLAEPPGS(0.008)AGPQAGPT(0.009)VVPGS(0.001)ATPMETGIAETPEGR 244.41 4.100999999999998e-61 12499190000.0 2451870.0 2218940.0 2133320.0 1969700.0 1970250.0 2788680.0 2780300.0 2513790.0 3203860.0 2947760.0 True False 2438669.404348365 2292796.076522442 2433672.912850154 2219063.8180421116 2221149.658913322 2595905.115446618 2645806.267222584 2701381.774566978 2414311.6325244997 2759631.433095698 0.8836938785019983 0.8308341646733711 0.8818833137148716 0.8041160103589672 0.8048718507390249 0.9406709476904982 0.958753489865338 0.9788922325531797 0.8748674201816053 1.0 21.39604416779447 2.660960005859004 6.086484680921291 0.9535146321667272 0.8408994842214814 0.6614149179294385 0.039211725484717894 0.13892968524732047 8.69218418859238 0.012559246770929696 0.011843624840676624 458.09969841069494 -2.660960005859004 -0.11261514794524574 KKEPVGDDESVPENVLSFDDLTADALANLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKEPVGDDESVPENVLSFDDLTADALANLK 30 2 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 210.45 3.3888000000000003e-26 335190000.0 726130.0 566090.0 518090.0 482010.0 493120.0 789830.0 799540.0 695260.0 1132300.0 702480.0 False True 722220.5967606265 584931.963441369 591032.5686809928 543032.4165784016 555915.9090487697 735230.911159832 760863.1956605916 747143.8316587445 853259.837042659 657647.124976614 1.0981886323707546 0.8894313397358335 0.8987077510633229 0.8257200494835462 0.8453103312335444 1.1179717560325029 1.1569474977749625 1.136086212929636 1.297443271074896 1.0 19.326954156263792 2.655133049169072 5.258063292365765 1.1534167468928116 0.9051554420080112 0.5882935085069132 0.09622630944330973 0.1494152710479203 7.023459491235638 0.030989577351539378 0.02922767203474935 451.9943948280906 -2.655133049169072 -0.24826130488480036 KKEQSEVSVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKEQSEVSVSPR 12 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 KKEQSEVSVS(1)PR;KKEQSEVS(0.017)VS(0.983)PR 149.99 3.5343000000000004e-05 1043290000.0 1412120.0 1359370.0 1204530.0 1135090.0 1239710.0 1564310.0 1629410.0 1531490.0 2194200.0 1743970.0 True False 1404517.3028212828 1404615.808693483 1374117.3540375533 1278792.2776165998 1397579.7201631465 1456172.9316896498 1550589.2133493347 1645777.5605486438 1653468.8107736465 1632668.3415121655 0.860258796664379 0.8603191309464224 0.8416390023002809 0.783252939437897 0.8560095670555591 0.891897573233369 0.9497270045140891 1.0080293215120082 1.0127401681851782 1.0 20.638800322470235 2.2229686315530137 1.5616103264228196 1.0102165593763506 0.8377833287640871 0.922392122027168 0.021332189160524536 0.10313574933420948 0.49478216267284303 0.013023067950540018 0.007743998862342569 167.09699182703892 -2.2229686315530137 -0.17243323061226346 KKGDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 KKGDSPER 8 2 Q9Y4E5-4 Q9Y4E5-4 ZNF451 Zinc finger protein 451 1 KKGDS(1)PER 62.408 0.06287100000000001 28119000.0 118680.0 76728.0 63811.0 54236.0 61564.0 64089.0 85479.0 93087.0 152960.0 97742.0 True False 118041.04006658746 79281.84509694445 72795.03414484509 61102.27203905766 69403.81048158354 59658.678279278385 81344.05420850951 100033.6246262082 115265.05755899046 91504.02187886373 1.290009309348767 0.8664301685219976 0.7955391757666537 0.6677550427231167 0.7584782510812778 0.6519787551880142 0.8889669824152172 1.0932156048685626 1.259672036181999 1.0 16.481547535155688 1.7396762828121497 3.4626675607988204 1.1411582168136725 0.8233948394955687 0.3311022723004007 0.1771277742339085 0.23132129697891238 5.898979778034261 0.10135395224507097 0.049039046317292855 54.91314062046565 -1.7396762828121497 -0.3177633773181038 KKGEMTAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 KKGEMTAEER 10 2 B7Z6D5;Q96GQ7 B7Z6D5 DDX27 Probable ATP-dependent RNA helicase DDX27 0 ; 97.163 0.0035132 162760000.0 269270.0 296670.0 296090.0 272220.0 286550.0 323830.0 323450.0 332620.0 405740.0 376690.0 False True 267820.28023870976 306544.4816091976 337776.8983395836 306683.02408865467 323040.4439850848 301444.39431382524 307803.4878010084 357441.79341013625 305750.8136374535 352649.32169946615 0.7594521349085448 0.8692615092293872 0.9578265930352275 0.869654371120598 0.9160387504172927 0.854799302777963 0.8728316456633478 1.0135899076384849 0.8670109222498934 1.0 18.427874739211266 7.999999999999999 0.15502951938863643 0.9915737785812048 0.35573364354128056 0.37390038043142293 0.05703397393640652 74.58066867522885 0.7518078953129672 0.18479386909229278 10.75984492975512 99999999.99999979 -7.999999999999999 -0.6358401350399242 KKGEQPTGQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKGEQPTGQQR 11 2 Q92733;H0YE12;H0Y679 Q92733 PRCC Proline-rich protein PRCC 0 ; 198.81 2.9464e-08 335090000.0 459900.0 403520.0 392100.0 365800.0 408740.0 422740.0 485960.0 428980.0 606410.0 531690.0 False True 457423.94949969306 416950.9192670092 447304.271805704 412110.24249368144 460790.61620821315 393516.9788229208 462452.25825252145 460992.66591630195 456968.38097769005 497757.0889972895 0.91897023590594 0.8376594296365304 0.8986396812685872 0.8279344515692585 0.9257339099608933 0.7905803604236838 0.9290721688848508 0.9261398302632959 0.9180549932462708 1.0 18.92508233722017 1.196241057843447 0.813711808592625 0.9950826446716197 0.868674920553725 0.43904334117364363 0.043580039030145755 0.49106465571262997 0.732608942101603 0.0380179801283395 0.014386899110200689 15.71234685888678 -1.196241057843447 -0.1264077241178947 KKGGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 40 3 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 KKGGSYVFQSDEGPEPEAEES(0.986)DLDS(0.008)GS(0.005)VHS(0.001)AS(0.001)GRPDGPVR;KKGGSYVFQSDEGPEPEAEES(1)DLDSGSVHSASGRPDGPVR 175.8 7.754199999999999e-20 597440000.0 193235.0 223572.0 205110.0 184513.0 218799.0 281414.0 307018.0 272242.0 346150.0 290148.0 True False 192194.64423042678 231013.45886787178 233987.70515192006 207872.32688145607 246661.75572672294 261960.5125573008 292166.3664173444 292558.0804568649 260845.97067236283 271630.5062317993 0.7075591283786625 0.8504694928143804 0.861419096101981 0.7652760721362629 0.9080782536120263 0.9644001927152964 1.0756021864790863 1.0770442705989982 0.9602970383958518 1.0 18.05128598906305 2.8195253015982407 1.8639010777246066 1.0388743890617231 0.804153470390459 0.778453732643297 0.05494351200114831 0.15089138725544976 1.0397655846587697 0.020015145061568127 0.020820133306165542 659.9716824885611 -2.8195253015982407 -0.2347209186712641 KKHPDASVNFSEFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKHPDASVNFSEFSK 15 2 P09429;Q5T7C4 P09429 HMGB1 High mobility group protein B1 0 ; 134.24 2.183e-05 1433320000.0 2861200.0 2690200.0 2427000.0 2266200.0 2184900.0 3081500.0 3021800.0 2595500.0 4446000.0 3184800.0 False True 2845795.6171092056 2779741.6807397585 2768700.5041378336 2553100.68764128 2463134.0640830984 2868483.158070753 2875623.989602991 2789189.3896819493 3350342.8733477513 2981543.3373555406 0.9544706533205264 0.9323163765264038 0.9286132015755013 0.8563017198689237 0.8261272050694921 0.9620799812404989 0.9644749930596367 0.9354851075737848 1.1236941725352598 1.0 21.507627876112597 1.3529822959917583 5.641646486822807 1.060348165916855 0.9179860430455079 0.5548769168691623 0.05086429087830755 0.15183136767750868 6.428379447014819 0.03721625968138181 0.01323533165476251 22.541473199967186 -1.3529822959917583 -0.14236212287134709 KKLEEER ddPTM_BT-474_Trastuzumab_2h_R1 4 KKLEEER 7 2 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5;B1AK53;A0A0J9YY76;H0Y7L4;A0A2R8YG57;A0A0J9YWQ8;A0A0A0MSQ4;B1AK53-2 Q15637-6;Q15637-5;B1AK53 SF1;ESPN Splicing factor 1;Espin 0 ;;; 122.52 0.0024372 2558320000.0 5128600.0 4853460.0 4357320.0 3709660.0 3663470.0 4876370.0 5348460.0 4708080.0 7987270.0 5368010.0 False True 5100988.187441024 5015004.482121473 4970792.781495614 4179302.5756399916 4129991.1894120984 4539278.019640261 5089734.556698672 5059420.8367458265 6018914.332434618 5025419.006015423 1.0150373891878757 0.9979276307345749 0.9891300159341099 0.8316326600105125 0.821820267020223 0.9032635913954138 1.0127980474078406 1.0067659693031972 1.1976940281457094 1.0 22.260812458690197 1.738604300233162 1.9736184614177634 1.0914840652115756 0.9264457665391378 0.39421878707579827 0.07940388485168216 0.32184287451724386 2.541715250297757 0.0588959399965825 0.02433830735838844 54.777763953279056 -1.738604300233162 -0.1650382986724378 KKNDIYGED ddPTM_BT-474_Trastuzumab_2h_R1 4 KKNDIYGED 9 2 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;;; 119.68 0.0031301 6057270000.0 5521040.0 5128150.0 4266450.0 4267070.0 4514020.0 5433570.0 5890400.0 5276270.0 7773600.0 5855300.0 False True 5491315.334085213 5298837.372717859 4867129.0753518175 4807280.62448745 5088853.690307282 5057960.095147977 5605458.8484868165 5670012.0597561775 5857900.440903301 5481609.741025461 1.0017705735209703 0.9666571724470465 0.8879014204395568 0.8769833774390765 0.9283502348263295 0.9227143729866784 1.0225935652686917 1.0343698890712114 1.068646021452714 1.0 22.38616818958403 2.2011266123326045 5.0650645329769395 1.0354444404152343 0.9276195215763038 0.6408237938740416 0.036902349468008196 0.12536640185113845 7.6175420649908325 0.015047584557842757 0.011257261942499307 158.90099341521676 -2.2011266123326045 -0.10782491883893053 KKNEGVNWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKNEGVNWLR 10 2 F8VUA2;F8VVT7;Q9HD42 F8VUA2 CHMP1A Charged multivesicular body protein 1a 0 ; 124.67 0.00024154 1225740000.0 771050.0 922760.0 860740.0 826190.0 798660.0 935210.0 985900.0 706800.0 1203650.0 961740.0 False True 766898.7524717093 953473.5087798004 981924.7103138007 930785.5692888304 900364.6169713055 870561.1339475411 938208.2504962569 759545.005057678 907026.5855836745 900360.9298129597 0.8517681377300814 1.0589903195575958 1.0905900931505157 1.0337916034208536 1.0000040952002953 0.9669023889434993 1.0420357208204931 0.843600582730156 1.0074033152150432 1.0 19.78014392839897 1.7740156516005654 24.999999999951367 0.9339474019351891 1.010866398689751 0.09209655899407387 0.07446692367755917 65.52899718206028 46226.20883635441 0.033610918382822506 0.01865188472996584 59.431357678109556 -1.7740156516005654 0.07691899675456193 KKNSQQDLNT(ph)PDTRPAGLEEADQPPLPGEQGINLDNSGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKNSQQDLNTPDTRPAGLEEADQPPLPGEQGINLDNSGPK 40 3 Q14686;A0A0D9SFT8;F6M2K2;F6M2K4 Q14686 NCOA6 Nuclear receptor coactivator 6 1 KKNS(0.099)QQDLNT(0.451)PDT(0.451)RPAGLEEADQPPLPGEQGINLDNSGPK 72.348 0.0013464 81539000.0 69182.0 36903.0 38263.0 34764.0 34602.0 71174.0 53742.0 52885.0 90240.0 52715.0 True False 68809.53179884271 38131.29404666542 43650.09781204194 39165.11883556678 39008.35959787784 66253.90890557441 51142.29414562318 56831.54724458864 68001.5611540488 49350.683568417895 1.3942974407527267 0.7726598962667185 0.8844882108173256 0.7936084366748387 0.7904320016925023 1.3425124864526452 1.036303662840282 1.1515858167557003 1.3779254153546636 1.0 15.59078244749225 2.7449993772352697 24.93204994938855 1.1754667887598922 0.9087341393821998 0.28499815897339664 0.20043557191782463 625.4685869726048 2421928.5533015407 0.05997375097890685 0.0622610834866629 555.903460121623 -2.7449993772352697 -0.26673264937769237 KKPAPGPHSS(ph)PPEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKPAPGPHSSPPEEK 15 2 O75182-2;O75182;M0QYC5 O75182-2 SIN3B Paired amphipathic helix protein Sin3b 1 KKPAPGPHS(0.147)S(0.853)PPEEK 98.035 0.0016089 102440000.0 117750.0 84500.0 73873.0 74609.0 77213.0 117660.0 118640.0 100030.0 155970.0 111830.0 True False 117116.04708325493 87312.53141867128 84273.67628437336 84054.49175016694 87045.61787269352 109526.44114184788 112900.92995118785 107494.74654204778 117533.28339092413 104692.91365752021 1.118662600855434 0.8339870232697408 0.8049606543577162 0.8028670596095231 0.8314375331786453 1.0461686213084058 1.0784008774511553 1.0267623928558636 1.1226479356129906 1.0 16.67580426840427 2.7288172874585 22.20408675626476 1.0559137743560656 0.8676421873282105 0.4831416904569129 0.09088989471876241 124.45459378807996 283618.11304355867 0.029244605385398036 0.02796642682628392 535.5712892831309 -2.7288172874585 -0.18827158702785507 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGS(ph)PTEFLEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816-6;P27816;P27816-2;P27816-5;H7C456 P27816-6 MAP4 Microtubule-associated protein 4 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDT(0.002)T(0.008)GS(0.984)PT(0.007)EFLEEK;KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT(0.001)GS(0.996)PT(0.003)EFLEEK;KKPCSETSQIEDTPSSKPTLLANGGHGVEGS(0.001)DT(0.021)T(0.066)GS(0.711)PT(0.2)EFLEEK;KKPCS(0.002)ET(0.002)S(0.002)QIEDT(0.002)PS(0.01)S(0.01)KPT(0.01)LLANGGHGVEGS(0.01)DT(0.01)T(0.052)GS(0.724)PT(0.168)EFLEEK;KKPCSETSQIEDTPSSKPTLLANGGHGVEGS(0.003)DT(0.011)T(0.045)GS(0.922)PT(0.018)EFLEEK;KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDT(0.001)T(0.003)GS(0.994)PT(0.002)EFLEEK 205.83 4.2836000000000003e-36 6549890000.0 2369250.0 1732187.0 1574373.0 1357344.0 1575940.0 2349510.0 2197353.0 2058682.0 3608050.0 2433696.0 True False 2356494.221248421 1789841.797165848 1796031.0337045705 1529183.6112283831 1776626.617671802 2187093.9038516334 2091058.6406863814 2212311.304615375 2718894.4228930166 2278375.4376880284 1.0342870548322198 0.7855780779405181 0.7882945909595502 0.6711727952879072 0.779777813736715 0.9599356926314907 0.9177849296024162 0.97100384248362 1.1933478468553027 1.0 21.119574067670246 1.976728938793425 1.1743105726155965 1.0764086349862574 0.8092677864816796 0.4859812375259145 0.10497838950654986 0.40880999091375697 1.0407097652062174 0.08147366482824661 0.03723489018113777 94.78267006757181 -1.976728938793425 -0.26714084850457775 KKPDS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKPDSPPK 8 2 Q96T23-2;Q96T23;Q96T23-3;H0YCN2 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 KKPDS(1)PPK 78.096 0.024815 434310000.0 749730.0 380050.0 320640.0 298040.0 316440.0 490350.0 558330.0 478510.0 1035800.0 479410.0 True False 745693.5369828328 392699.734504924 365783.3249471584 335771.83344127063 356736.75831317494 456453.2586597418 531321.4448722745 514218.8460245465 780540.9690089077 448813.64335644885 1.6614769805261942 0.8749728095788767 0.8150004581225541 0.7481319661546025 0.7948438368435555 1.0170217982817102 1.1838353239415624 1.1457290874202606 1.7391204134786076 1.0 18.775757007120404 1.8970693595058763 1.727268058490858 1.3423553289783996 0.9536482705678508 0.17738785577857075 0.3006046064202248 0.5535979931794449 3.0885397262835723 0.1983571635599865 0.09041135914130231 78.8986113502991 -1.8970693595058763 -0.38870705841054876 KKPEDS(ph)PSDDDVLIVYELTPTAEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKPEDSPSDDDVLIVYELTPTAEQK 25 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 KKPEDS(0.5)PS(0.5)DDDVLIVYELTPTAEQK;KKPEDS(0.841)PS(0.159)DDDVLIVYELTPTAEQK 158.97 1.2568e-11 249290000.0 647800.0 366470.0 325730.0 314440.0 272180.0 514860.0 494640.0 529950.0 996170.0 505010.0 True False 644312.3167773469 378667.73241420666 371589.95270408544 354248.0717597403 306840.50966274785 479268.9400500753 470712.37349170144 569497.5600315734 750677.2514941145 472779.8294391863 1.3628168476257398 0.8009388489847042 0.7859682870668726 0.7492876169864333 0.6490135377110389 1.0137254387916388 0.9956270216732018 1.2045724554431905 1.587794581644 1.0 18.850808960483548 1.8401106231352429 1.9657840080612348 1.3109290650765937 0.8665114883175689 0.3471130815138891 0.2268832317155285 0.32404173373044204 2.377333449271891 0.14525022140652064 0.06552624224382661 69.20072159835817 -1.8401106231352429 -0.4444175767590248 KKPEEEGSAHQDTAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKPEEEGSAHQDTAEK 16 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 0 79.837 0.010354 122340000.0 217360.0 193220.0 181290.0 182330.0 177710.0 256770.0 266640.0 229790.0 336520.0 253300.0 False True 216189.75791096635 199651.21089604337 206814.0561990717 205412.959305284 200340.31513030658 239020.09427156468 253741.6045362839 246938.09664997712 253589.15513697368 237134.1771389594 0.9116769270432084 0.8419335133587631 0.8721393883171877 0.8662309321397946 0.844839480953048 1.0079529537047718 1.0700338837602166 1.0413433425299663 1.0693910013164056 1.0 17.855344081733747 2.6372645524319114 4.039839370052572 1.0476035717706673 0.8661245159809903 0.9152705086106865 0.026049036457968112 0.05576196100603915 1.6121513616331073 0.0081127950032942 0.007631941784274649 433.77503393144235 -2.6372645524319114 -0.18147905578967705 KKPLKQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKPLKQPK 8 3 Q9Y2S6 Q9Y2S6 TMA7 Translation machinery-associated protein 7 0 ; 71.37899999999998 0.021419 1960270000.0 3207400.0 2675600.0 3104300.0 2430050.0 2180160.0 3480600.0 3975200.0 3192600.0 6566900.0 3871800.0 False True 3190131.714775637 2764655.728565648 3541358.456940693 2737694.080841363 2457790.453179281 3239994.3144511 3782904.3892613095 3430848.023694312 4948575.486951719 3624698.409185252 0.880109557995669 0.7627271062220811 0.9770077554498411 0.7552887914491989 0.6780675730016764 0.8938659023991392 1.043646660278039 0.9465195821534534 1.3652378565928864 1.0 21.789429530886622 1.9361912603598086 1.3897028161492428 1.1374865188980257 0.8158493712422306 0.5183345144097655 0.12712121605405396 0.33917938491272076 1.2169943617887102 0.08999353574717711 0.04038743869822049 86.3358681395214 -1.9361912603598086 -0.3216371476557951 KKPNATRPVT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKPNATRPVTPPR 13 3 F8W0W8;P36873;P36873-2 F8W0W8 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit 1 KKPNAT(0.002)RPVT(0.998)PPR 94.454 0.0052945 5525400000.0 2315600.0 1738600.0 1612600.0 1687200.0 1588900.0 2038300.0 1900700.0 2026400.0 2760600.0 2359500.0 True False 2303133.0668873475 1796468.2499941052 1839640.0630295295 1900799.347007486 1791236.99685186 1897397.118642094 1808755.8796208904 2177620.2578507015 2080287.1201448075 2208914.6899304194 1.0426536965806932 0.8132809556582259 0.8328253107355078 0.8605127919482309 0.8109127097653028 0.8589725657091184 0.8188437008755037 0.985832666049813 0.9417688829849451 1.0 21.074906271045453 1.7018420500272213 7.345677013417898 0.9719938642273976 0.8574484690596348 0.3846278848637539 0.0652287133540674 0.12284790448667259 14.48261823603381 0.030924543605185432 0.01612709621771956 50.331752230940516 -1.7018420500272213 -0.11454539516776285 KKPRPPPALGPEETSASAGLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKPRPPPALGPEETSASAGLPK 22 3 Q01105 Q01105 SET Protein SET 0 105.32 0.00022895 759110000.0 2103200.0 1786800.0 1868800.0 1442200.0 1594300.0 2209700.0 2157700.0 2247100.0 3297100.0 2300200.0 False True 2091876.6048874883 1846272.5578565921 2131910.7960992097 1624782.372127903 1797324.6548435527 2056948.640074295 2053323.8077855501 2414790.0125425966 2484573.883876491 2153399.2666997025 0.9714299792130496 0.8573758644796919 0.9900211396312836 0.7545197944726909 0.8346453361610597 0.9552100587582963 0.9535267516518068 1.1213851745401127 1.1537915528708924 1.0 21.038184407028925 1.9800920417062318 2.1057122891205298 1.1046678398622334 0.8847550274038054 0.5712657582776296 0.07601015787793317 0.2129176536051957 1.7517895973658673 0.04308330170770388 0.0223181881303206 95.51950027358545 -1.9800920417062318 -0.21991281245842798 KKPS(ph)SEER ddPTM_BT-474_Trastuzumab_2h_R1 2 KKPSSEER 8 2 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 KKPS(0.5)S(0.5)EER;KKPS(0.659)S(0.341)EER 114.83 0.0020319 197485000.0 349290.0 285792.0 241167.0 226581.0 246687.0 277108.0 338820.0 343820.0 539710.0 386750.0 True False 347409.46144976723 295304.4139550874 275121.2173388582 255266.13136812637 278101.1272215967 257952.17620206703 322429.9821819069 369477.59428258456 406705.70224348025 362067.2838866668 0.9595163023856976 0.81560645520108 0.7598621294515407 0.7050240182651493 0.7680923949722204 0.7124426527385733 0.8905250392157301 1.0204666666271822 1.1232876328334211 1.0 18.465898296357647 1.8351971534490106 2.568263349254134 1.0614624562916979 0.7829079990974219 0.7153133681981722 0.07341919908337396 0.14379467818833774 1.7548666570093447 0.043823411294249465 0.021326989251222634 68.42221880676406 -1.8351971534490106 -0.27855445719427596 KKPSS(ph)EER ddPTM_BT-474_Trastuzumab_2h_R1 2 KKPSSEER 8 2 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 KKPS(0.129)S(0.871)EER;KKPS(0.335)S(0.665)EER 87.667 0.01194 233088000.0 343780.0 290380.0 241011.0 222192.0 242579.0 268360.0 341270.0 326470.0 496050.0 356610.0 True False 341929.1266775489 300045.12276158284 274943.25389483396 250321.4844181408 273469.9977716203 249808.90485148987 324761.466321998 350832.84918106976 373805.1242294542 333850.8444908191 1.0241972794738639 0.8987400442829615 0.8235511709253589 0.7498003630930599 0.8191382537573324 0.748265008083152 0.9727741345609474 1.0508670412865098 1.1196770366106827 1.0 18.348844164034713 2.02817226931994 4.540533220445483 1.0531481980453494 0.8401789061033869 0.5988223437917597 0.0789633417012571 0.14086931373745462 6.964251064112508 0.03456998748449303 0.023496565286099586 106.70192862550945 -2.02817226931994 -0.21296929194196257 KKPVPVLLGSLLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKPVPVLLGSLLNR 14 2 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 216.37 3.4623e-12 262430000.0 351840.0 368730.0 354420.0 323510.0 325560.0 405910.0 402570.0 368570.0 541680.0 446770.0 False True 349945.7325330989 381002.95514800807 404319.2553261352 364466.3328297722 367018.1362546994 377850.3971093623 383096.15113325726 396074.56496053777 408190.22214012797 418256.75610095955 0.8366768197490356 0.9109307849555475 0.9666771652303924 0.8713937731152792 0.8774948184366157 0.9033934099038345 0.9159353567997951 0.9469651336963284 0.9759321665125674 1.0 18.674029318740196 1.474606227875782 1.2382719752273088 0.9984792235445525 0.8961600592386085 0.5921041894497776 0.031234631676646113 0.3110920428013835 0.9170614368615346 0.02875461185818609 0.009809426291648616 29.826770176986283 -1.474606227875782 -0.10231916430594401 KKQDPPVTHDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KKQDPPVTHDLR 12 2 P25685;P25685-2;M0R080;M0QZD0;M0QYT3;M0QXK0;M0R128;A0A1B0GX60;M0R1D6 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ;; 177.54 1.39e-05 3151200000.0 1304120.0 1310240.0 1229020.0 1136850.0 1197330.0 1629420.0 1588850.0 1477960.0 1973190.0 1559630.0 False True 1297098.7628213547 1353850.5463431943 1402055.3331666572 1280775.0934361431 1349802.8783690853 1516782.0306421036 1511991.2555035779 1588252.8801288137 1486923.763891375 1460093.0781335796 0.8883671748375256 0.9272357814844284 0.9602506539917912 0.8771872921097218 0.9244635828933063 1.0388255744496706 1.0355444307950141 1.087775090447699 1.0183760105157766 1.0 20.477628910403087 2.7401781219163426 4.716880115503764 1.0461116109677095 0.915631952484723 0.7982687437908653 0.030157356320075095 0.07866397183438315 5.017796528153767 0.009682396362022278 0.009699606919068 549.7663092563228 -2.7401781219163426 -0.1304796584829866 KKQEEEQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKQEEEQEK 9 2 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 0 62.303 0.046967 17894000.0 34517.0 25205.0 24965.0 22367.0 20807.0 21552.0 30487.0 27450.0 55256.0 39884.0 False True 34331.164307199215 26043.933188255745 28479.85500033001 25198.659906659814 23456.64811724883 20062.160967950935 29012.227338350145 29498.458388275674 41638.899192465906 37338.56897358968 0.9194558134105872 0.6975075345463063 0.7627462911198976 0.6748694607038457 0.6282149734726092 0.5373039599386175 0.7770042649162874 0.790026484655599 1.1151712649169263 1.0 15.188379015890549 1.3887710273612852 3.025294515626145 1.0580316205190998 0.7057910081063757 0.6421498986566774 0.0999819714512235 0.154794787547541 2.399082221298998 0.08234666524280944 0.02650274976504607 24.477723650422416 -1.3887710273612852 -0.3522406124127241 KKQPAS(ph)PDGR ddPTM_BT-474_Trastuzumab_2h_R1 3 KKQPASPDGR 10 2 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 KKQPAS(1)PDGR;KKQPAS(1)PDGR;KKQPAS(1)PDGR 109.22 0.0016125 503306000.0 1513980.0 1432980.0 1307740.0 1211050.0 1297850.0 1448440.0 1538220.0 1492350.0 1838670.0 1570170.0 True False 1505828.899898991 1480675.8730452985 1491858.4249201526 1364368.8058282468 1463123.5045403673 1348312.7520610094 1463810.4220289616 1603716.7349997498 1385554.4154157238 1469960.4063098312 1.0244009930030724 1.0072896294957816 1.0148970125428711 0.9281670444807012 0.9953489211409258 0.9172442647253306 0.9958162245360687 1.0909931506425392 0.9425794119815791 1.0 20.487345865617282 1.9880927545141842 24.634468390680176 1.0268270767307341 0.9800336131263497 0.04508206727383057 0.04767458381831833 842.2854393542094 1742573.397920567 0.01874461226189406 0.012840265048373425 97.29550006097413 -1.9880927545141842 -0.04679346360438441 KKQPAS(ph)PDGRT(ph)SPINEDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKQPASPDGRTSPINEDIR 19 3 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 2 KKQPAS(1)PDGRT(0.531)S(0.469)PINEDIR 69.435 0.043418 487360000.0 194140.0 223730.0 168760.0 205810.0 206360.0 267140.0 285370.0 221440.0 423020.0 300130.0 True False 193094.77181098197 231176.71780235885 192519.9411117844 231865.52489782532 232638.72280845273 248673.24057991878 271565.5628807353 237964.977249536 318772.38917759043 280975.44644577976 0.6872300560548935 0.8227648384463706 0.685184216439835 0.8252163234575329 0.8279681578986132 0.8850354852195443 0.9665099435410621 0.8469244564238336 1.1345204472843657 1.0 18.100084537841628 2.5563658212862426 0.5045955330211004 1.0292271897388994 0.7130739559197723 0.6885812889116891 0.07286209004618094 0.5950412693363196 0.3155743348846837 0.0645357193374278 0.07190915050057814 360.0524921444973 -2.5563658212862426 -0.3161532338191271 KKQQEEEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 KKQQEEEAER 10 2 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75 Q9UM54-1 MYO6 Unconventional myosin-VI 0 81.525 0.011671 155120000.0 27786.0 33556.0 30612.0 31985.0 27927.0 36467.0 40094.0 32668.0 49239.0 40518.0 False True 27636.403263314816 34672.89117496964 34921.903515726124 36034.29772050406 31483.337913702526 33946.12212408439 38154.50004604618 35105.852044742795 37104.70821879665 37932.10655079496 0.7285754938578708 0.9140776594766521 0.9206423447366977 0.9499682721878485 0.8299918137038639 0.894917926022038 1.005862935530707 0.9254917598033338 0.9781873877505237 1.0 15.21113187314299 4.754730861786898 3.3429343593679848 0.9333432283740154 0.6972312598502858 0.6142887074995546 0.04938181794552754 0.2369948387487177 4.248036984766752 0.01209831225094269 0.14652008745172834 56850.05141348969 -4.754730861786898 -0.23611196852372962 KKQVAPEKPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKQVAPEKPVK 11 3 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ; 101.39 0.001454 3694500000.0 1158130.0 1204560.0 1135740.0 990360.0 1083640.0 1281170.0 1391360.0 1403430.0 2159310.0 1588810.0 False True 1151894.756760339 1244653.0514281031 1295642.3199709523 1115739.4744561005 1221635.13076251 1192605.7334497827 1324054.6012886434 1508161.0730731392 1627176.9837715996 1487410.7855513236 0.7744294770145679 0.8367917346832738 0.8710722905580583 0.7501219470064153 0.8213165741632691 0.8017998424071744 0.8901741295346796 1.013950609827079 1.0939661051122944 1.0 20.5043717079279 1.8283668630087384 2.2422662563449207 1.0502517192711902 0.8112286676716104 0.8761136441355969 0.038146572701156636 0.09043668129190267 0.8616105985899559 0.022978710761500966 0.010681287963868151 67.35453822497611 -1.8283668630087384 -0.23902305159957982 KKS(ph)EPDDELLFDFLNSSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKSEPDDELLFDFLNSSQK 19 2 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 1 KKS(1)EPDDELLFDFLNSSQK;KKS(1)EPDDELLFDFLNSSQK 235.57 2.8659e-24 1566080000.0 1436350.0 915710.0 843390.0 708230.0 690700.0 1187280.0 1088200.0 1084880.0 1688740.0 979110.0 True False 1428616.8511934872 946188.8537916166 962131.9811227045 797891.8453835428 778656.5509003599 1105206.1281564971 1035559.6086723079 1165839.254509016 1272572.6549566532 916622.3615417553 1.5585664403719752 1.0322559142023664 1.0496492574154555 0.8704695399766288 0.8494845680948286 1.2057376892895617 1.1297559956212508 1.271886115180606 1.3883281800110037 1.0 19.805967955972605 2.5246162040949423 24.940961451063682 1.2156251367785886 1.0544436608198118 0.08252494572319191 0.2042961365169136 850.1616275564259 446442.981426134 0.0670278788012554 0.06319261526428506 334.66955334533253 -2.5246162040949423 -0.16118147595877685 KKS(ph)EPDDELLFDFLNSSQKEPTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KKSEPDDELLFDFLNSSQKEPTGR 24 3 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 1 KKS(1)EPDDELLFDFLNSSQKEPTGR 101.39 0.020892 2014200000.0 594460.0 465600.0 396110.0 380940.0 364290.0 557730.0 544870.0 468380.0 864000.0 438490.0 True False 591259.4934107146 481097.21453885635 451878.84495015955 429166.96494134155 410680.17218400456 519175.4378551999 518512.55649446783 503332.8939854486 651078.7770068503 410505.19278982363 1.4403215934796618 1.1719637729045134 1.1007871590592009 1.0454605020333387 1.000426253789853 1.2647231922374604 1.2631083981438047 1.2261303945140403 1.586042730865524 1.0 18.647040946293103 2.516325110191391 24.411367035948405 1.2781598234950087 1.1430118940069174 0.10042696461753986 0.17203473915144332 860.1994566085134 535626.0188320962 0.054896464963518056 0.0517464321816925 328.3409951957548 -2.516325110191391 -0.1351479294880913 KKS(ph)PASTFALSSQVPDVMVVGEPTLMGGEFGDEDER ddPTM_BT-474_Trastuzumab_2h_R1 1 KKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDER 36 2 Q86U70-2;Q86U70 Q86U70-2 LDB1 LIM domain-binding protein 1 1 KKS(0.329)PAS(0.329)T(0.329)FALS(0.007)S(0.007)QVPDVMVVGEPTLMGGEFGDEDER 210.04 6.4952e-31 227130000.0 152860.0 121810.0 116980.0 112980.0 110180.0 162690.0 182160.0 149710.0 217660.0 183620.0 True False 152037.01874434276 125864.3722143 133449.76719161248 127283.25641589977 124210.76991197577 151443.6232310663 173348.2248812237 160882.12041197644 164020.60949457297 171901.21439500886 0.8844441226283573 0.7321901282505103 0.7763166052158337 0.74044419560305 0.7225706365666154 0.8809921661348278 1.008417686235129 0.9358986844751903 0.9541561999537294 1.0 17.3912202111985 2.511030131355154 4.1216174075766885 0.9662144194041575 0.7685717558129282 0.8063172087930682 0.046924256819526305 0.08967095553695686 3.3733943544075804 0.01574233542363365 0.014099889512864946 324.36212081562434 -2.511030131355154 -0.19764266359122928 KKS(ph)PIINESR ddPTM_BT-474_Trastuzumab_2h_R1 7 KKSPIINESR 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 KKS(1)PIINESR;KKS(1)PIINESR;KKS(1)PIINESR;KKS(1)PIINESR;KKS(1)PIINESR;KKS(1)PIINESR;KKS(1)PIINESR 159.66 5.998600000000001e-06 40032510000.0 26307160.0 22302620.0 20498720.0 18743240.0 18781380.0 27025950.0 26848420.0 27850600.0 36281400.0 27547980.0 True False 26165525.17356027 23044949.224481523 23384761.5979317 21116132.26221228 21173077.417039234 25157709.688743204 25549659.353675544 29928953.194481265 27340335.115852274 25789844.33138776 1.0145670069716275 0.8935668214342211 0.9067430302194989 0.8187770345132601 0.8209850802112192 0.9754890089865642 0.9906868387949168 1.1604937513351319 1.0601202071847124 1.0 24.62029972919548 2.2177426721958575 2.265956399213425 1.0866747373579067 0.8902402518026101 0.562670349218827 0.06689625949745771 0.19652755643353104 2.0461973745447817 0.031186563080355573 0.02084429351927169 165.09832691295944 -2.2177426721958575 -0.19643448555529652 KKS(ph)PNELVDDLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKSPNELVDDLFK 13 2 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4 Q9UNZ2 NSFL1C NSFL1 cofactor p47 1 KKS(1)PNELVDDLFK;KKS(1)PNELVDDLFK 195.96 1.1471e-07 7910000000.0 5989000.0 3607400.0 3250500.0 2998500.0 3078200.0 5065800.0 4857600.0 4930500.0 9441200.0 4821900.0 True False 5956755.889440452 3727470.1282806485 3708142.146147515 3378109.792556872 3470190.524079174 4715613.169610523 4622619.330165958 5298438.9465717 7114542.765598462 4514162.213763717 1.3195706329024366 0.825727998191018 0.821446366025873 0.7483359331343895 0.768734121582635 1.0446264326152437 1.024025967890909 1.1737369406922769 1.5760494259391398 1.0 22.106026831183044 1.8745326534330982 1.7237904603335243 1.2922194708714256 0.8937639448056593 0.3419074601273038 0.20468816752267657 0.364722650221293 2.0371162916806025 0.13608332972741416 0.06086408474057032 74.90876782796654 -1.8745326534330982 -0.3984555260657663 KKS(ph)SSEAKPTSLGLAGGHK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKSSSEAKPTSLGLAGGHK 19 3 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 KKS(0.892)S(0.054)S(0.054)EAKPTSLGLAGGHK 94.389 0.0011449 1379900000.0 554340.0 295510.0 227130.0 240370.0 200410.0 376020.0 316440.0 345210.0 636730.0 397250.0 True False 551355.4950329642 305345.87171043275 259107.929750649 270800.81735430897 225931.02557686536 350026.6224558699 301132.5882818096 370971.32314086106 479816.4232448754 371897.16489716386 1.4825482608490004 0.8210492053491891 0.696719292878441 0.7281604779890972 0.60750940556199 0.9411919624411723 0.8097200428109692 0.9975104898781393 1.2901857516917428 1.0 18.504544224257128 1.5144997352371083 4.137785036252984 1.1480032113161676 0.8496574269391827 0.17576892496990615 0.23492076122761218 0.28220638171918033 10.468862046140659 0.14934231109896853 0.0607366801812076 32.69638475043029 -1.5144997352371083 -0.2983457843769849 KKSEAPSGESR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKSEAPSGESR 11 2 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 ; 97.86 0.0033475 119781000.0 139747.0 157556.0 150294.0 140731.0 142032.0 154754.0 182433.0 167511.0 256105.0 180896.0 False True 138994.61767935148 162800.15621538684 171454.08882113345 158547.53017052554 160118.93331038053 144056.22023173154 173608.01882826225 180011.52142362276 192991.35438117967 169351.06240714283 0.8207484246257023 0.9613175961305355 1.0124181471559632 0.9362062919295768 0.9454852602308037 0.8506366490066707 1.0251368746118943 1.0629488759323562 1.1395934081429167 1.0 17.36965751190194 2.0521580129429893 6.409620921305272 1.0673534252225438 0.9289689731846598 0.5565644293044723 0.06000058645723735 0.1503378391471813 13.60393986610086 0.022950039100534416 0.01673541496127526 112.76076483392927 -2.0521580129429893 -0.13838445203788408 KKT(ph)GGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKTGGSK 7 2 O60231;A0A140T947;A2AB15 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 KKT(1)GGSK;KKT(1)GGSK 91.626 0.026153 748980000.0 981690.0 3290700.0 3140800.0 3846900.0 3504300.0 2248200.0 2390200.0 1624470.0 605120.0 2048300.0 True False 976404.6901160133 3400228.960229843 3582997.3396770055 4333917.145568452 3950551.8333866084 2092787.2256935472 2274576.894549302 1745696.2002915198 455996.2841925755 1917575.7403621457 0.5091870269132699 1.7731914774785842 1.8685036863265359 2.2601021979710514 2.060180336157425 1.0913713506295777 1.1861731699420301 0.9103662314594335 0.23779831721612094 1.0 20.870852131713065 2.173528924872379 1.4986844060456672 0.7040192912093036 1.7166624434998614 0.40596809886477836 0.4933706020552854 0.40325975635179706 1.7521401836420782 0.30390724165967226 0.17013830949889364 149.11760674240475 -2.173528924872379 1.0126431522905577 KKT(ph)PVTEQEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKTPVTEQEEK 11 2 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 KKT(0.954)PVT(0.046)EQEEK;KKT(0.749)PVT(0.251)EQEEK 135.47 0.00019206 351520000.0 402190.0 225310.0 200821.0 183988.0 193018.0 350700.0 337700.0 325790.0 634210.0 341500.0 True False 400024.6537275098 232809.3071472291 229094.85123257656 207280.8619352854 217597.69819268232 326456.9344590013 321364.16086072254 350102.10412809975 477917.4434786046 319705.1776271408 1.2512298258555024 0.7281999899881045 0.7165816110108815 0.6483500313436547 0.6806198754980994 1.021118697175855 1.0051891034292744 1.0950779925635414 1.4948692636938785 1.0 18.2863825831987 2.087178025056621 1.4152585436515261 1.2193235620155858 0.7963319831347867 0.3944867294481347 0.2035887172492908 0.4098872376698321 1.5491131596754248 0.13276325863065386 0.0676870282739443 122.23006003095159 -2.087178025056621 -0.4229915788807991 KKTDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKTDELR 7 2 H0Y993;A0A494C028;P35659;B4DFG0;P35659-2;H0Y8X0;A0A494C198;D6RDA2;D6R9L5 H0Y993 DEK Protein DEK 0 ; 109.71 0.003918 823970000.0 1347660.0 1629220.0 1385510.0 1382890.0 1441430.0 1721070.0 1933780.0 1748510.0 2968920.0 2147830.0 False True 1340404.348299102 1683447.6028157114 1580577.7649311938 1557963.7322090939 1624987.5664750312 1602096.4818629988 1840235.6736430181 1878992.6949538772 2237269.4474897897 2010753.6505502241 0.6666178862499206 0.8372222039010356 0.7860623624871617 0.774815816837021 0.8081485099034227 0.7967641791547164 0.9151969825540064 0.9344718555849486 1.1126521873415878 1.0 20.93930490860038 1.8516989843137721 1.2168642415868671 1.04930608386971 0.7761309229769662 0.8028966240135668 0.05423801841023016 0.18415040515739486 0.5054252615398985 0.04040311416044094 0.01692285375649416 71.07207322417534 -1.8516989843137721 -0.27317516089274374 KKVEEEDEEEEEEEEEEEEEEDE ddPTM_BT-474_Trastuzumab_2h_R1 2 KKVEEEDEEEEEEEEEEEEEEDE 23 2 O15347 O15347 HMGB3 High mobility group protein B3 0 ; 232.49 2.4619e-33 1536940000.0 1083290.0 619760.0 574090.0 577220.0 603110.0 874740.0 877070.0 879190.0 1480570.0 871120.0 False True 1077457.6870048342 640388.3369471683 654916.8819202671 650295.9928163 679912.4835869637 814271.2827164717 834642.7733672311 944799.6222363588 1115703.362121565 815524.3757966453 1.321183914278858 0.7852473279190518 0.8030623012102015 0.7973961442673717 0.8337120308915242 0.9984634511029182 1.0234430731171096 1.1585179429044423 1.3680809491827755 1.0 19.637368473771726 2.020290931702007 1.7274304831259273 1.1973330674110627 0.8947558384762365 0.30250111914622846 0.17057224895720485 0.4009949047028143 2.24104086639552 0.10293927304586278 0.052059630044155765 104.78302492365387 -2.020290931702007 -0.3025772289348262 KKVEEVLEEEEEEYVVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKVEEVLEEEEEEYVVEK 18 2 P83916;J3KS05;K7ELA4;B5MD17;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 0 102.99 0.00030847 108100000.0 235290.0 197180.0 155300.0 175840.0 164030.0 246810.0 233460.0 226630.0 444480.0 262380.0 False True 234023.2247831767 203743.01710217283 177164.89010820142 198101.32597071884 184918.24821801911 229748.6056282465 222166.6478961925 243542.28140382198 334943.8597268576 245634.6837651806 0.9527287482206539 0.8294554090616333 0.7212535599311608 0.8064875974929411 0.7528181500410398 0.9353264046696242 0.9044596002923477 0.9914816493775004 1.3635853642193865 1.0 17.90615475893625 1.5660828901001353 2.670089870495946 1.1822582893571432 0.8337037425988745 0.5958110447690054 0.10975386976090844 0.14983388533107045 2.3799995229767896 0.07615948979965124 0.028502881821178563 36.81992419994701 -1.5660828901001353 -0.3485545467582687 KKVENTR ddPTM_BT-474_Trastuzumab_2h_R1 3 KKVENTR 7 2 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ;; 87.251 0.010956 3880340000.0 2376109.0 2365241.0 2093842.0 1975504.0 1746250.0 1601182.0 2515270.0 2106899.0 3622604.0 2412574.0 False True 2363316.2931545298 2443966.616866623 2388636.7535990775 2225602.603847013 1968624.5866653454 1490496.0571170016 2393596.7808355014 2264126.5019963398 2729861.7846066225 2258601.4618114806 1.0463626864294437 1.0820707673262873 1.0575733674073264 0.9853896942322877 0.8716121989429851 0.6599199027886795 1.0597694286958221 1.0024462218227859 1.2086513848340352 1.0 21.10699829388746 1.599440688776928 2.668577562277264 1.099731855800506 0.9583249494809628 0.14385004484656172 0.12807620154555865 0.46699239672506637 7.604228858574111 0.09561429565755933 0.037173584525242165 39.75947935883301 -1.599440688776928 -0.14140690631954322 KKWNLDELPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKWNLDELPK 10 2 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRX8;J3QR02;J3KTQ4;X6RLV5 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 106.29 0.0013701 1672410000.0 4478600.0 4465500.0 4116000.0 3863300.0 3729100.0 4941100.0 5048800.0 4671100.0 8524500.0 5409200.0 False True 4454487.715219233 4614131.468048247 4695497.023086657 4352393.383886923 4203978.780892615 4599533.387098296 4804570.255711027 5019681.201365182 6423751.1974477945 5063980.224950893 0.8796416094342924 0.9111669601934497 0.9272344706148987 0.8594807227804943 0.8301728273303798 0.9082842315291424 0.9487735027159627 0.9912521333777246 1.2685182232341927 1.0 22.271840340318512 1.5381228273853393 2.9485029782988614 1.1346107856426149 0.892844393002481 0.6419060126329876 0.07000778669798191 0.1257905793784939 2.3863888413183165 0.04650927260092446 0.017374597459846916 34.52413668679117 -1.5381228273853393 -0.2417663926401339 KKWPER ddPTM_BT-474_Trastuzumab_2h_R1 2 KKWPER 6 2 A0A494C039;Q9Y4L1;A0A087X054 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ; 67.035 0.056152 2118400000.0 3033400.0 4008400.0 3508200.0 3411600.0 3562400.0 4192200.0 4429000.0 4365900.0 5725600.0 4225400.0 False True 3017068.5114424266 4141817.170871027 4002124.06617896 3843508.2102007717 4016050.5240009255 3902403.0813773195 4214752.349576955 4691705.627590992 4314602.599109285 3955731.354453061 0.7627081419586396 1.0470420763554849 1.0117279733047781 0.9716302412382083 1.0152485505568931 0.9865187323664666 1.0654799256861334 1.1860526429099962 1.0907218444579747 1.0 21.91551302101304 2.15500148439002 3.3697095098598355 1.1154070060021544 0.9729433861847313 0.31239576313779316 0.0850223437014902 0.2536259027579417 5.727606251629937 0.03382355682437632 0.02377124936527152 142.88988423851674 -2.15500148439002 -0.14246361981742306 KKYDVDTLDMVFLDHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKYDVDTLDMVFLDHWK 17 2 P21964-2;P21964;E7EMS6;E7EUU8;H7BZ45 P21964-2 COMT Catechol O-methyltransferase 0 ; 205.78 4.5496e-12 693140000.0 846680.0 1026150.0 935740.0 1024930.0 970770.0 1217750.0 1326270.0 980780.0 1941640.0 1277910.0 False True 842121.5689549911 1060304.782429225 1067484.0584021164 1154686.0329115584 1094391.8052954143 1133569.8087751612 1262113.2532565882 1053970.7838999263 1463148.8386430352 1196352.6897262044 0.703907448185466 0.886281103837268 0.8922820733126946 0.9651719286691438 0.9147735569064297 0.9475214278446503 1.0549675393344364 0.8809866797232985 1.2230079400564473 1.0 20.190211334035716 6.150038493086358 0.38475045440627587 1.0224141473770274 9.55476211865578e-14 0.5447405183005194 0.08591819059797494 13.79518695489522 0.6895418500430353 0.0633779951459454 8.12974182920963 1412662.7484686705 -6.150038493086358 -1.022414147376932 KKYELR ddPTM_BT-474_Trastuzumab_2h_R1 2 KKYELR 6 2 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ; 105.39 0.01857 16005200000.0 28039000.0 28182000.0 22617000.0 21737000.0 21600000.0 28161000.0 23358000.0 26212000.0 36577000.0 26801000.0 False True 27888041.13942573 29120020.833621226 25801277.009511862 24488901.971255172 24350631.966769572 26214296.35386355 22228084.303774826 28168072.54183905 27563088.45668929 25090537.234509487 1.11149637326492 1.1605977409511021 1.0283270050521207 0.976021427615076 0.9705105848940433 1.0447881649105721 0.8859150402408424 1.1226572105079011 1.0985451686055994 1.0 24.580640026041316 4.194579618775106 7.087981510342072 1.0165285647133222 1.1359308046145942 0.35972668178722533 0.06418275931606852 0.1988855414217914 25.14389252112408 0.016517330876759988 0.03678910761202998 15652.352459428022 -4.194579618775106 0.11940223990127197 KKYPCDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KKYPCDK 7 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 71.692 0.030162 1372600000.0 1799300.0 1662900.0 1561300.0 1426700.0 1397900.0 2007800.0 2124600.0 1980500.0 3018400.0 2114000.0 False True 1789612.7687210233 1718248.6212557235 1781117.468937122 1607320.073717155 1575914.278997558 1869005.5118528167 2021824.981239829 2128294.966775227 2274555.764487819 1979082.7101135447 0.9042637579398332 0.8682045537940876 0.8999712138533791 0.8121540678938776 0.7962852037180114 0.9443796877724162 1.0215970110333752 1.075394654250262 1.1492979817692015 1.0 20.916400476291294 2.2854156169197664 2.208659585703068 1.0778508118269519 0.8573283021941289 0.8049765521887736 0.04775469001916642 0.12634806751101885 1.261261864797749 0.021499957583416992 0.015191002315891251 192.9370424594612 -2.2854156169197664 -0.22052250963282294 KKYPDRVPVIVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KKYPDRVPVIVEK 13 3 F5GZY7;H6UMI1;Q9H0R8;O95166;Q9H0R8-2 F5GZY7 GABARAPL1;GABARAP Gamma-aminobutyric acid receptor-associated protein-like 1;Gamma-aminobutyric acid receptor-associated protein 0 ; 160.27 1.7758e-05 1093630000.0 1292970.0 1266200.0 1145050.0 1007300.0 1194220.0 1416280.0 1606810.0 1451150.0 2129700.0 1466730.0 False True 1286008.7931824725 1308344.701565937 1306263.0870469809 1134824.076719203 1346296.8383034994 1318375.8971645108 1529082.4616897167 1559442.1817903896 1604863.9715179275 1373122.0356692718 0.9365582663274793 0.9528247800118058 0.9513088080407192 0.8264553675785122 0.9804640835490652 0.960130172641154 1.1135808922798536 1.13569088637508 1.1687700945937427 1.0 20.38902841944939 2.2925853296947434 3.1709323136217633 1.1206704644529877 0.9289404782040102 0.6859518956791129 0.05616305934184453 0.12755682239424243 2.6257331707925817 0.021172452036578616 0.016325045184426065 196.14865283002692 -2.2925853296947434 -0.19172998624897752 KLAAVTYNGVDNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLAAVTYNGVDNNK 14 1 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4 E7EPK1 SEPT7 Septin-7 0 129.92 0.00018699 0.0 266300.0 232020.0 261900.0 222530.0 240380.0 313000.0 314070.0 276960.0 332110.0 251500.0 False True 264866.2703887111 239742.64544094846 298773.24352439126 250702.27518348495 270990.96815611486 291363.04672274744 298877.2342360887 297628.16157438327 250265.94054600154 235449.0546800173 1.1249408953825395 1.018235752811861 1.2689507032866771 1.0647835283271674 1.150953731899243 1.2374780910406247 1.2693923729796763 1.2640873074596513 1.062930326418685 1.0 17.845055404714138 4.249280120576179 24.99967678430432 1.1824416833670082 1.0715883319807582 0.10957630994899825 0.09635099410520538 358.3259925861304 835659.1573334227 0.02300424575190088 0.06163211073908029 17753.34204835515 -4.249280120576179 -0.11085335138624997 KLAEEEDLFDSAHPEEGDLDLASESTAHAQSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLAEEEDLFDSAHPEEGDLDLASESTAHAQSSK 33 1 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ; 183.8 4.0203e-20 208713000.0 225648.0 205868.0 222046.0 210521.0 222800.0 265127.0 255197.0 249272.0 366100.0 288320.0 False True 224433.13623984985 212720.1919301662 253308.14674156928 237172.9370147955 251172.25936093833 246799.39453182687 242852.14616278888 267873.94241756835 275879.5604886664 269919.1707568292 0.8314827568955528 0.7880884908386382 0.9384592655324032 0.8786813339333542 0.9305462026156712 0.9143455570044301 0.8997217407042752 0.9924228118605796 1.0220821281983226 1.0 18.042167920947424 4.955407551907364 0.2277459728622796 1.0262012219938623 0.6083717755110247 0.7061817605799893 0.03829130367727037 6.836472395717781 0.28784213424363975 0.06419077895342716 0.8254566130118753 90241.75897523457 -4.955407551907364 -0.4178294464828376 KLAEPAER ddPTM_BT-474_Trastuzumab_2h_R1 1 KLAEPAER 8 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 0 81.33800000000002 0.037071 193920000.0 95631.0 115870.0 96085.0 91555.0 110550.0 131530.0 115460.0 110050.0 122040.0 116950.0 False True 95116.13332160302 119726.662905106 109612.93281420834 103145.85361265429 124627.88721881394 122437.64068831607 109874.75869996748 118262.48982257687 91964.87725221769 109486.15087406755 0.8687503630573961 1.0935324874359427 1.0011579723931168 0.942090417730495 1.1382981886189663 1.1182934070734252 1.0035493788282586 1.0801593523787678 0.8399681285535093 1.0 16.740388866373674 4.753190349933491 24.0809394920251 1.0310797171398571 0.8687501710616855 0.22704863380367912 0.08513113758561203 2272.985921561002 3741289.8670481225 0.01965877620752332 0.4242260181368898 56648.75243706473 -4.753190349933491 -0.16232954607817163 KLALDIEIATYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLALDIEIATYR 12 1 K7EPI4 K7EPI4 GFAP 0 ; 151.54 0.00011071 1098250000.0 1086050.0 1477340.0 1245850.0 1364850.0 1176220.0 1490400.0 1500170.0 1232930.0 1699380.0 1520100.0 False True 1080202.8274714989 1526512.368829112 1421254.850877676 1537639.870058777 1326004.6449978591 1387372.156024226 1427601.0458940768 1324937.4972916835 1280590.5695253501 1423085.916576913 0.7590566492779408 1.0726775882238935 0.9987133133158667 1.080496863996386 0.9317811592060633 0.974904002536549 1.0031727735230662 0.9310312763678278 0.8998687673093407 1.0 20.440591334264944 0.027200746653802177 8.002675144467261 0.9999999908702732 0.9679449302515516 0.01222358568786197 0.0876425151399743 10316502.248749657 2578263.091247493 0.07936383733278521 0.019248557942323316 1.0646350174063672 -0.027200746653802177 -0.032055060618721654 KLAPEYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLAPEYEK 8 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 108.67 0.0060394 910440000.0 585950.0 694140.0 574000.0 545470.0 554400.0 707170.0 696630.0 719820.0 1049300.0 734280.0 False True 582795.3103051656 717244.0302835089 654814.2107025614 614526.4460717003 624999.5538137526 658285.002399122 662931.3455149685 773536.6235718977 790714.0748996382 687417.6217512636 0.8478038558575755 1.0433890659600196 0.952571173596566 0.8939637661690052 0.9091992029845047 0.9576202028718388 0.9643793300295184 1.1252790139438635 1.1502673918733952 1.0 19.390827309689797 1.8161638728345193 4.432791527179986 1.1032707709804397 0.9388757959648871 0.5768382887089791 0.060222282004783204 0.14307950147360501 4.711733732025793 0.02852042978190595 0.015703241658389534 65.4883235294007 -1.8161638728345193 -0.16439497501555256 KLAS(ph)YMNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLASYMNK 8 1 Q8IZH2-2;Q8IZH2;H7C5E4 Q8IZH2-2 XRN1 5-3 exoribonuclease 1 1 KLAS(1)YMNK 59.426 0.042357 1214100000.0 688790.0 986200.0 993840.0 1116100.0 1059900.0 1026000.0 1235300.0 935980.0 1062300.0 1157500.0 True False 685081.6311717635 1019025.07082951 1133764.0333878624 1257398.1455636895 1194871.982480514 955075.0349442122 1175543.819695737 1005827.5804101368 800510.3990907138 1083627.359014393 0.6322114567085825 0.9403832990672719 1.046267449743121 1.1603602798542745 1.1026594821002886 0.8813685138153905 1.0848229420535727 0.9282043056987611 0.7387321780236459 1.0 20.04743729305621 4.724691760631745 3.4772610857684136 0.9972733879741785 0.5927364187911487 0.46447198425407454 0.11533187784170573 0.2517006417482792 5.337159536374848 0.028889585238345162 0.2631293254460587 53050.77840731669 -4.724691760631745 -0.40453696918302984 KLASQGDSISSQLGPIHPPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLASQGDSISSQLGPIHPPPR 21 1 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 111.45 0.0001611 859260000.0 465660.0 555230.0 624900.0 631160.0 546980.0 560540.0 571530.0 509220.0 605380.0 679820.0 False True 463152.93829968927 573710.4949063774 712880.4882718289 711064.7912857077 616634.6607955389 521791.189169229 543882.910443378 547220.5821667656 456192.2106763969 636433.3055768163 0.7277320879364123 0.9014463729021982 1.120118136535495 1.1172652107533105 0.9688912497070948 0.8198678236933498 0.8545795854452378 0.8598239240022254 0.7167949990658297 1.0 19.27964981062938 2.7690295369935254 7.9914514532727425 0.8435899268447534 0.9805475534872784 0.18053372551806335 0.1224572010195567 0.4381177463916892 103.03242001114933 0.039315264989667 0.04122856841130506 587.5293098859679 -2.7690295369935254 0.13695762664252498 KLAT(ph)PPAAQESSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLATPPAAQESSR 13 1 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 KLAT(1)PPAAQESSR 63.43600000000001 0.040474 518770000.0 363810.0 411850.0 349480.0 335120.0 344860.0 388010.0 388190.0 345320.0 444010.0 417030.0 True False 361851.2873830911 425558.1782814179 398683.74626538507 377546.1576393722 388775.8768546369 361187.78197729465 369411.76667019184 371089.5318994302 334589.68492918025 390414.78836265416 0.9268380659980775 1.0900155193048662 1.021179930036487 0.967038567424018 0.9958021274888417 0.9251385775935037 0.9462033142224296 0.9505007058152909 0.8570107867389022 1.0 18.5746481756301 3.0789987674435015 1.300880512062087 0.9338280652088793 1.0165320293873998 0.2724064722822517 0.051282492729634456 0.507067377969911 1.8039174067398889 0.018995543528485485 0.024648218126054253 1199.495898895757 -3.0789987674435015 0.08270396417852055 KLAVNMVPFPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLAVNMVPFPR 11 1 Q13509;A0A0B4J269;Q13509-2;Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q13509;Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;K7ESM5 TUBB3;TUBB;TUBB1;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 ; 164.33 3.671e-05 3675500000.0 2399200.0 3606400.0 4151400.0 2570600.0 1675790.0 2351600.0 3207100.0 2001680.0 5866000.0 2468700.0 False True 2386282.973776177 3726436.843885165 4735881.035384335 2896037.6964304433 1889191.9233144843 2189039.427070966 3051960.3206882533 2151055.525925087 4420402.900372904 2311145.4524395973 1.0325109444138474 1.6123765987777254 2.0491488453854068 1.2530746143101663 0.8174266666428512 0.9471664471659546 1.320540131936165 0.9307313495368615 1.9126459114491552 1.0 21.14017662831184 3.4944845607197346 24.589846066519062 1.1296182272675774 1.5830591506084104 0.19674625884793273 0.3684962780195201 849.6737325069537 1203302.306196217 0.09681111670619727 0.14621336980755514 3122.371403145651 -3.4944845607197346 0.45344092334083297 KLCERPLASSPPRLY(ph)EDDET(ph)PGALSGLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLCERPLASSPPRLYEDDETPGALSGLTK 29 3 O75969 O75969 AKAP3 A-kinase anchor protein 3 2 KLCERPLAS(0.247)S(0.259)PPRLY(0.493)EDDET(0.369)PGALS(0.326)GLT(0.305)K 45.856 0.045538 390780000.0 477890.0 213180.0 146920.0 157210.0 180650.0 316550.0 258910.0 306920.0 662260.0 278370.0 True False 475317.0933385705 220275.56742996862 167605.05894846743 177112.7698808957 203654.7067035617 294667.6435785484 246385.5341677512 329823.92890818056 499054.8968293476 260604.18827545273 1.8239042759979402 0.8452495291332092 0.6431403119711671 0.6796236509203433 0.7814713495252935 1.1307095466443209 0.9454396562012551 1.2656125409602554 1.9149918507904327 1.0 17.991500744665462 1.5797049021611922 3.9612368811536025 1.4934887850538412 0.9485061376148924 0.20496444883285891 0.3785265495320583 0.23406083959290488 8.35313468804219 0.2257907904222393 0.0971345979201668 37.99311499794689 -1.5797049021611922 -0.5449826474389488 KLCLNICVGESGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLCLNICVGESGDR 14 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 ; 237.46 4.326e-17 2228700000.0 1315060.0 1555400.0 1289050.0 1462470.0 1433650.0 1420700.0 1526500.0 1439180.0 1917000.0 1627760.0 False True 1307979.8630769018 1607170.548740845 1470537.035376542 1647618.5520495707 1616216.829590704 1322490.352968073 1452657.3632037088 1546578.9196079609 1444581.0364839484 1523874.9632045515 0.8583249247210909 1.054660380639847 0.9649984879889061 1.0812032429385146 1.0605967475126483 0.8678470247893649 0.9532654569958421 1.014898831565331 0.9479655951864606 1.0 20.539313101180877 2.792011206051666 24.99996839610662 0.962170103976254 1.0089007064902706 0.09936248288700544 0.06927041973468387 805.5669138833733 376778.8214828233 0.02102642428078872 0.022301885433564785 619.4570586513756 -2.792011206051666 0.04673060251401662 KLCVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLCVFK 6 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 103.71 0.05524 1811980000.0 2274800.0 2345800.0 2306200.0 2117040.0 2143600.0 2584700.0 2583700.0 2123440.0 3264600.0 2505600.0 False True 2262552.7295540385 2423878.5349339526 2630892.9141502553 2385057.0469350005 2416574.7538873777 2406025.7727293437 2458716.5603075186 2281901.875409838 2460083.0733988 2345690.4628479173 0.9645572446106376 1.0333326469644706 1.1215857146624844 1.016782514449621 1.0302189449810863 1.0257217697036518 1.048184574755177 0.9728060507350005 1.048767138018713 1.0 21.16158121731229 1.7649858327603145 24.999999999372807 1.004803373571984 1.0364920198019087 0.08521212978121806 0.04010707591946973 39.0169091000897 36936.247174339645 0.01857442468036584 0.010301642250445024 58.208422913149775 -1.7649858327603145 0.031688646229924844 KLDAGNQLALIEELHK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDAGNQLALIEELHK 16 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 144.66 8.4065e-07 320350000.0 753260.0 621600.0 592000.0 580530.0 630440.0 780490.0 721890.0 664770.0 1070400.0 850160.0 False True 749204.5318550536 642289.5802348657 675348.4542437566 654025.0384769178 710722.7970893623 726536.563375837 686969.4228123979 714378.5130336614 806614.262625153 795902.0609414051 0.9413275434528754 0.8069957495463145 0.8485321088940819 0.8217406017309805 0.8929777066398201 0.912846691861155 0.8631331121317113 0.8975708797495556 1.0134591958099433 1.0 19.60223138650306 1.3234244971895384 3.388028862257322 1.0096449949155373 0.8678513967366022 0.6651478153654755 0.038202107451612864 0.13676611374799116 2.575717648862439 0.031477008554190236 0.009821509352305724 21.05835764152111 -1.3234244971895384 -0.1417935981789351 KLDALCNIHENIR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDALCNIHENIR 13 1 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 150.05 2.8599e-05 1665270000.0 1693620.0 1797730.0 1749040.0 1700440.0 1656690.0 1826640.0 1937320.0 1567040.0 2361500.0 1891620.0 False True 1684501.7380988728 1857566.3562992667 1995289.6290717893 1915715.5296499606 1867659.6515290507 1700368.6762480456 1843604.4303189053 1683980.482067886 1779539.967478792 1770895.1921026385 0.9512148124919871 1.0489420066095052 1.1267124322036925 1.0817780398259325 1.0546415507015527 0.9601746528145154 1.0410579002871068 0.9509204664271769 1.0048815849829538 1.0 20.756047400099416 2.763171359990695 18.32820380288957 0.9894441305290111 1.0581836762636279 0.2936454599082773 0.04706131716560914 33.00923759800769 24581.542733765556 0.014716600673962582 0.01558077813377897 579.6573672744164 -2.763171359990695 0.06873954573461671 KLDDDSDS(ph)PSFFEEKPEEPVVLALDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDDDSDSPSFFEEKPEEPVVLALDPK 27 2 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 1 KLDDDS(0.137)DS(0.841)PS(0.023)FFEEKPEEPVVLALDPK 123.19 4.4889e-05 210180000.0 38103.0 23698.0 22715.0 21128.0 21936.0 39309.0 34273.0 33525.0 62888.0 31926.0 True False 37897.85768164127 24486.77360425648 25913.074557680593 23802.802633697367 24729.41957514158 36591.66135343279 32615.08405442565 36026.80573650062 47390.0950560264 29888.455346776234 1.2679764558568574 0.8192719670572611 0.8669927655018671 0.7963878480011425 0.8273903514993421 1.2242740860604415 1.0912268190515075 1.2053752968664693 1.5855652125942967 1.0 14.867300719150636 2.73054302031776 24.04251115455002 1.2205335133215884 0.9009283741182962 0.39394436847102865 0.18913683542445597 358.7613182226192 1075820.7597931325 0.05977666002709247 0.05733177257010603 537.7036943058016 -2.73054302031776 -0.31960513920329225 KLDDFVETGDIR ddPTM_BT-474_Trastuzumab_2h_R1 6 KLDDFVETGDIR 12 1 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PPU6;A0A1W2PRF6;Q14108-2 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 ;;;;; 133.16 0.00026965 7062800000.0 9166440.0 11587660.0 10753730.0 9251960.0 11475240.0 11957020.0 10554120.0 10296490.0 12685970.0 10031230.0 False True 9117088.905527225 11973348.258211605 12267761.710903216 10423257.187375167 12936543.794923754 11130459.351197507 10043576.894946318 11064866.368316803 9559682.676788887 9391028.313231923 0.9708296686403641 1.274977335691897 1.3063278377744838 1.1099164904751526 1.3775428380613244 1.1852226380272683 1.069486382103114 1.1782379947387072 1.0179590943538452 1.0 23.162851710288805 1.4185078788985972 0.9944946677456455 0.997254725846299 1.2104583960895174 0.2770643709687016 0.11215276002162086 0.6112615274694606 1.2185824174043518 0.09954295134481306 0.03591246467415227 26.212465924256414 -1.4185078788985972 0.2132036702432184 KLDEAVAEAHLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 KLDEAVAEAHLGK 13 1 P23526;P23526-2 P23526 AHCY Adenosylhomocysteinase 0 ;;; 123.38 0.00014544 3921100000.0 6111220.0 5195230.0 4659140.0 4519660.0 4587510.0 6227340.0 5967370.0 5785080.0 8712060.0 6546720.0 False True 6078317.870540368 5368150.089967141 5315106.414029148 5091848.492588814 5171702.206197926 5796858.643381571 5678705.515532872 6216792.045641015 6565089.54862303 6128902.724671022 0.9917465072618902 0.8758745783904222 0.8672199009838983 0.8307928386744182 0.8438218778346698 0.9458232417439333 0.926545218718198 1.0143401396495015 1.0711688280181377 1.0 22.547197376458058 1.9094262290088284 1.5298935736190804 1.0394960227939152 0.8820138224664349 0.6279671219285212 0.047129093315528815 0.24522276640332663 1.0711316465668541 0.03371168425329876 0.015072351848287783 81.1757348886097 -1.9094262290088284 -0.15748220032748028 KLDELYGTWR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDELYGTWR 10 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ; 170.04 7.1324e-06 7814900000.0 9508000.0 11457800.0 11132500.0 10647400.0 8313600.0 9203800.0 10722300.0 8113100.0 14747700.0 10222700.0 False True 9456809.984438099 11839165.946613645 12699859.234575346 11995359.74829748 9372287.681432199 8567562.969414752 10203621.385836316 8718540.719487034 11113326.944055475 9570278.533906218 0.9881436523434386 1.2370764241259085 1.32701040931896 1.2533971405115876 0.9793119028069492 0.8952260834479395 1.0661781002179038 0.91100177373087 1.161233385703712 1.0 23.190129482921325 3.234082336556748 24.98542172083307 0.9914023101569501 1.2129264210654311 0.4474823528216555 0.10776446450455608 92.23185616489563 514583.8035381636 0.0305986891002328 0.03776508101392176 1714.2822822138867 -3.234082336556748 0.221524110908481 KLDEMTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDEMTDR 8 1 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 115.78 0.0038446 261120000.0 401630.0 395640.0 313120.0 315420.0 300610.0 353950.0 363000.0 371040.0 435220.0 378920.0 False True 399467.66870528815 408808.63823056995 357204.5743121707 355352.1396592586 338890.9016449352 329482.26960867835 345440.3032053372 398728.8889029436 327965.8626492148 354737.00119026704 1.1260952969803941 1.15242739510926 1.0069560635446093 1.0017340690904177 0.9553300064775803 0.9288071684181515 0.9737927028933092 1.1240126842282263 0.9245324326156401 1.0 18.436390294277455 4.216618196368537 7.340869473100478 0.9964552241514779 1.1395616972583704 0.5532536312458651 0.05357943234199515 0.122027926906149 27.65807214796053 0.014717043477026688 0.03366416559056689 16467.1407043257 -4.216618196368537 0.1431064731068925 KLDEMTDRDWR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDEMTDRDWR 11 2 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 85.522 0.008523000000000001 589320000.0 310770.0 486840.0 421060.0 470940.0 416950.0 476950.0 535690.0 497300.0 679290.0 533180.0 False True 309096.8488497927 503044.1750990047 480341.58808087104 530560.9557134343 470046.1110437306 443979.56911953405 509776.628165474 534411.0512382331 511888.08151965635 499151.99592163635 0.6192439404736326 1.0077975831193098 0.9623152707102098 1.0629246402867814 0.9416893348805216 0.8894676826840455 1.021285364639723 1.0706379131100023 1.0255154455999 1.0 18.92911966950261 4.73924748754445 24.921868755064768 1.0002888138318782 0.6192438179608023 0.8260968715667558 0.052118287911879294 22.961570353286284 832945.9777315877 0.013613599744004608 0.0815239369801637 54858.949569305114 -4.73924748754445 -0.3810449958710759 KLDGFPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDGFPLLR 9 1 P09661;H0YKK0 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 0 ; 151.22 0.0001337 1231980000.0 1753670.0 1951940.0 1756880.0 1669560.0 1694020.0 1944930.0 1984090.0 1719930.0 2312000.0 1900680.0 False True 1744228.4355710533 2016909.1429273542 2004233.432925286 1880926.124816156 1909743.4057568088 1810481.5669727568 1888111.9867401568 1848279.9102275749 1742238.579212777 1779376.9751459856 0.9802467155269059 1.1334917620600777 1.1263680832786163 1.0570700594020213 1.0732652116059485 1.017480608247288 1.0611084739844125 1.0387230677051646 0.9791284272799127 1.0 20.76294075871454 1.8942726806437666 0.676467295642064 0.9931566290890256 1.0811765100342088 0.30402638058927944 0.04333359600028107 0.8386264854861386 0.754366201831598 0.03892076295838353 0.02123024646142911 78.3921689492635 -1.8942726806437666 0.0880198809451832 KLDKENLS(ph)DER ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDKENLSDER 11 2 Q9BZI7-2;Q9BZI7 Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B 1 KLDKENLS(1)DER;KLDKENLS(1)DER 57.328 0.059148 534430000.0 635520.0 531990.0 564280.0 500380.0 547540.0 740190.0 766680.0 744850.0 1237250.0 749770.0 True False 632098.4309329102 549696.9655552537 643725.7191903149 563728.0566948821 617265.9734761593 689022.4075198415 729592.7593979823 800434.4892716624 932346.3158006096 701919.0366896079 0.9005289754129111 0.7831344312126591 0.9170939745789707 0.8031240459776353 0.8793976815151081 0.9816266143306362 1.0394258044900582 1.1403515896173344 1.3282818488550239 1.0 19.420945105960048 2.2440852971498617 1.368352931983461 1.1727995490872223 0.8501539562619554 0.7016292055834219 0.08485249259178348 0.21452052594902082 0.784606834636006 0.048250469836351985 0.028262316381718732 175.4225004722446 -2.2440852971498617 -0.32264559282526684 KLDLEAWFPGSGAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDLEAWFPGSGAFR 15 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 175.26 1.3887e-06 1236430000.0 2157900.0 2574300.0 2291800.0 2390800.0 2280800.0 2595500.0 2630800.0 2246400.0 3032000.0 2448900.0 False True 2146282.1061652293 2659984.019302787 2614465.5193172963 2693475.0348657565 2571246.360639264 2416079.19414981 2503538.1533680423 2414037.774988065 2284804.2267184826 2292609.1053912286 0.9361744665141994 1.1602431539888989 1.140388700877616 1.1748514077397076 1.1215371842468917 1.0538557089685427 1.0920039301426483 1.0529652740675628 0.9965956347925199 1.0 21.12855896271324 1.5695010541959877 1.1172684197698541 0.9926430056299944 1.1096604128441938 0.2692571307236872 0.06391221039146568 0.5796947825006576 1.3860868763429317 0.05608732632382053 0.02043341381124696 37.110863031200275 -1.5695010541959877 0.1170174072141994 KLDNTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDNTK 6 1 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 90.862 0.077843 2684500000.0 1775000.0 1412500.0 1299500.0 1167600.0 1228600.0 901800.0 1544500.0 1647600.0 2482800.0 1790000.0 False True 1765443.597221039 1459514.2086257196 1482458.3045435164 1315418.0402832744 1385054.9275172737 839460.6886088616 1469786.6344370313 1770552.2783432775 1870947.2078155184 1675760.6675038983 1.0535177435872907 0.8709562391148105 0.8846479889945668 0.784967725876174 0.8265231153684729 0.500943067162011 0.8770862468244512 1.056566318017581 1.1164763823955584 1.0 20.676384687060228 1.7812058743811725 4.225858513077555 1.0656924071210725 0.8152725788057548 0.3920804369651456 0.13147570334648817 0.21184599268398616 7.336434449473938 0.07000294591232974 0.03684998313394704 60.42349950357714 -1.7812058743811725 -0.2504198283153177 KLDNTTAAVQELGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDNTTAAVQELGR 14 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 134.14 6.4903e-05 133120000.0 125300.0 141360.0 118370.0 134240.0 133200.0 131970.0 146220.0 132710.0 153640.0 149080.0 False True 124625.39872213858 146065.08214607535 135035.46710951583 151234.7702360627 150162.23046174602 122847.22452396477 139146.77998535632 142613.4940877254 115777.48067052374 139565.58676619077 0.8929522069858027 1.0465694698133068 0.9675412846272478 1.083610750617349 1.075925906529576 0.8802114286938537 0.9969992116929508 1.0218385304870368 0.8295560772046308 1.0 17.090583728862736 2.7495048414414547 24.931721687671523 0.9575506019438148 1.0165289028647806 0.1589892888564125 0.07513749664049102 1492.2443297480033 3399436.864463555 0.022914495930667873 0.024098460942089894 561.7005400633867 -2.7495048414414547 0.05897830092096579 KLDPAQS(ph)ASRENLLEEQGSIALR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 KLDPAQS(0.685)AS(0.315)RENLLEEQGSIALR 79.237 0.0099202 1628900000.0 569100.0 583530.0 463360.0 520280.0 445060.0 494250.0 568240.0 522870.0 705890.0 597280.0 True False 566036.0288329538 602952.4432986658 528597.0604026809 586147.3946544899 501735.75292270706 460083.66083935375 540752.060312398 561889.2144800619 531932.867941395 559161.0790428653 1.0122951150352892 1.078316188120174 0.9453395098734306 1.0482621495362625 0.8973009240584929 0.82281059623623 0.9670774318520549 1.0048789794916815 0.951305246158982 1.0 19.092904418436955 3.245685287139957 24.99993962818666 0.9416247134853877 1.0197353309816486 0.31319658163390673 0.058367222047535174 231.68199236079042 812949.9634665495 0.017615137549603862 0.023357086262272748 1760.699687451419 -3.245685287139957 0.07811061749626091 KLDPAQSAS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 KLDPAQSASR 10 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 KLDPAQSAS(1)R;KLDPAQS(0.001)AS(0.999)R;KLDPAQS(0.002)AS(0.998)R;KLDPAQS(0.009)AS(0.991)R;KLDPAQS(0.01)AS(0.99)R 133.98 0.00019375 3020520000.0 4493270.0 4349450.0 4022030.0 3568290.0 3500310.0 4271130.0 3982630.0 3874230.0 4955910.0 4165480.0 True False 4469078.733569224 4494218.813951957 4588296.863888542 4020035.148134987 3946053.7305371915 3975876.836258555 3789974.971775952 4163344.715541323 3734592.386291692 3899635.5001531527 1.1460247331817826 1.1524715101643352 1.1765963418140857 1.0308745901962133 1.0119032228479343 1.0195508877951305 0.9718792875967782 1.0676240677821847 0.9576772973127927 1.0 21.89490785055626 3.67861664929435 4.909047362284752 1.011700244642145 1.157926415866181 0.8470518182928156 0.029216313646575863 0.07333392478873403 3.6795619616071416 0.007579045119792847 0.012139789215963743 4771.0794568420515 -3.67861664929435 0.14622617122403603 KLDPAQSAS(ph)RENLLEEQGSIALR ddPTM_BT-474_Trastuzumab_2h_R1 4 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 KLDPAQS(0.078)AS(0.922)RENLLEEQGSIALR;KLDPAQS(0.051)AS(0.949)RENLLEEQGSIALR;KLDPAQS(0.043)AS(0.957)RENLLEEQGSIALR;KLDPAQS(0.452)AS(0.548)RENLLEEQGSIALR 199.8 1.3294e-24 3057060000.0 1398472.0 1514094.0 1408971.0 1555419.0 1328448.0 1527860.0 1559147.0 1481923.0 2005312.0 1685659.0 True False 1390942.7821368475 1564489.7035008501 1607341.869804526 1752334.885919295 1497617.978471812 1422242.6343955803 1483725.1030900578 1592511.619312518 1511129.7274041204 1578078.799454724 0.8814152896658026 0.9913888356154527 1.0185434785385326 1.11042293105058 0.9490134326557624 0.9012494400704262 0.9402097687407825 1.0091458169660357 0.9575755836313519 1.0 20.58973781570481 KLDPELHLDIK ddPTM_BT-474_Trastuzumab_2h_R1 4 KLDPELHLDIK 11 1 Q12905;B4DY09 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ;;; 145.29 2.3571e-05 7775230000.0 25700420.0 24063610.0 22147620.0 20350310.0 22110800.0 29286100.0 28210600.0 26144670.0 44379400.0 30317620.0 False True 25562051.79430509 24864552.712090567 25265812.38543597 22926657.159435708 24926479.319020797 27261620.839064028 26845945.503042616 28095718.035344232 33442691.523492828 28382723.53537966 0.9006201171089679 0.8760453407896667 0.8901828027159411 0.8077680470254079 0.8782271823896469 0.9605005243799752 0.9458551597269579 0.9898880211521044 1.1782763370754683 1.0 24.75850969767132 1.9011418994915221 1.1773263698072036 1.077187377836241 0.8728342540280536 0.6778439479092627 0.054638409420545 0.2691658383992584 0.6883331750007909 0.04244140311615634 0.018396344532836277 79.64195265653692 -1.9011418994915221 -0.2043531238081875 KLDPGSEETQTLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDPGSEETQTLVR 14 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 118.21 0.00041515 629440000.0 606040.0 556590.0 391560.0 380540.0 353140.0 367680.0 365150.0 374190.0 609970.0 541770.0 False True 602777.1479773736 575115.7616842395 446688.24449946854 428716.324982355 398110.2857752319 342263.1470256222 347486.2994915389 402113.957898319 459651.066679246 507193.7747673673 1.1884553359391037 1.1339172330102547 0.8807052978998992 0.8452712677299573 0.7849273898478578 0.6748173263416074 0.685115466275033 0.7928211620553803 0.9062632262986124 1.0 18.95217751256523 4.204728459165105 1.7999754688435656 0.787252515952306 1.209763023815823 0.6835865658755256 0.09273375320202192 0.20684256529251746 1.2316104769325398 0.025098853576928978 0.10489002504350833 16022.432814321679 -4.204728459165105 0.42251050786351696 KLDQEMEQLNHHTTTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDQEMEQLNHHTTTR 16 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;A0A494BZX5;A0A494C122;A0A494C0Y7;E7ESD9;H7C0P8 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 146.86 4.4074e-07 684340000.0 518390.0 741010.0 821380.0 843030.0 838740.0 972100.0 961190.0 588760.0 998510.0 917770.0 False True 515599.045838543 765674.0698999964 937023.164437055 949757.5115621862 945548.5673985339 904901.0150772602 914693.5675976252 632696.2608627027 752440.5898485065 859197.1328575725 0.600094001854651 0.8911506342595311 1.090579947957512 1.105401164926403 1.100502470549184 1.0531937089544081 1.064591038095622 0.7363807869777699 0.8757484878307167 1.0 19.71262965349214 -0.5496633278832754 7.191735972191182 0.9999999946110387 0.9508775878634925 0.008912714571016167 0.16353926765877314 0.0 0.0 0.16823313363932788 0.03965292987221048 0.28205686344494685 0.5496633278832754 -0.0491224067475462 KLDTNSDGQLDFSEFLNLIGGLAMACHDSFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDTNSDGQLDFSEFLNLIGGLAMACHDSFLK 32 1 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 0 41.81100000000001 0.093876 703670000.0 66989.0 94430.0 118820.0 111220.0 91429.0 89622.0 119320.0 88278.0 104260.0 115070.0 False True 66628.33866717755 97573.04546585956 135548.82319804563 125300.44059635646 103071.94120786006 83426.64208749526 113548.0357533355 94865.75262660111 78566.52001242383 107726.13408361668 0.6184974447840191 0.9057509238206178 1.2582724178409026 1.1631387468067744 0.9567960651763104 0.7744327112188002 1.054043540309354 0.8806196698098032 0.7293171771247333 1.0 16.71700876089344 2.995606275472808 24.954713806906717 0.8914541225785092 1.0075585404324703 0.05863784815924977 0.18086273450213686 531.0493808900644 3016193.2627920457 0.055519237587650705 0.0648206161985892 989.9340793367339 -2.995606275472808 0.11610441785396108 KLDVEEPDSANSSFYSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLDVEEPDSANSSFYSTR 18 1 Q14980;Q14980-2;A0A087WY61;Q14980-5;H0YFY6 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 201.52 2.2353000000000006e-15 470520000.0 374050.0 403360.0 362760.0 353840.0 388290.0 434730.0 432190.0 427850.0 514480.0 445240.0 False True 372036.1563608616 416785.59376373125 413833.4548335555 398636.10771996697 437736.42992485926 404678.138344345 411283.3185738692 459778.33957827877 387693.29767880123 416824.40201085835 0.892548887651664 0.9999068954530016 0.9928244431878896 0.9563646125247304 1.05016987444381 0.9708599985799369 0.9867064322283972 1.103050438890335 0.9301118068147597 1.0 18.669080213736404 5.7955575945756195 1.1305400760707929 1.0089087227626843 4.852458486842728e-19 0.2967530307241014 0.04681775085146087 18.04862947877172 2.98301089804876 0.013430343528580574 37.5343179691127 624536.1685342232 -5.7955575945756195 -1.0089087227626843 KLDVLSNDLVMNMLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDVLSNDLVMNMLK 15 1 P09467;A0A3B3IUC7 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ; 177.74 1.1873999999999998e-06 398530000.0 895260.0 970800.0 995590.0 679120.0 504280.0 805980.0 948610.0 756460.0 1597130.0 907540.0 False True 890440.0196327372 1003112.4911390063 1135760.4181765907 765096.522368258 568497.0688982679 750264.4996728423 902722.1102578902 812910.8864260473 1203538.7119455456 849620.0202159162 1.048045006527091 1.1806601389690448 1.336786317591665 0.9005161179862757 0.6691192007855397 0.8830588755219958 1.0625009872395415 0.9567934689432813 1.4165611488765144 1.0 19.696458236254397 3.7251082624380585 24.885518273476837 0.9693677903039979 1.1877134616483362 0.1959431514030282 0.18811456827325632 1117.5614945238706 2067377.6994406416 0.05181578537937716 0.080794198166746 5310.168014471511 -3.7251082624380585 0.21834567134433835 KLDVSIEMPEELDISQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLDVSIEMPEELDISQLR 18 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ;; 192.18 3.0106e-14 1723729000.0 1422670.0 1711570.0 1524240.0 1424130.0 1370550.0 1590720.0 1661980.0 1413140.0 2007080.0 1647990.0 False True 1415010.5027934976 1768538.5727840858 1738839.7430684147 1604424.711980663 1545081.4186137053 1480757.2705521027 1581583.6780198517 1518595.6825795209 1512462.0274941074 1542813.8672847757 0.9171621624608538 1.1463071536273957 1.127057372208242 1.0399340750056372 1.00146975041968 0.959777003533234 1.0251292858828833 0.984302588135355 0.9803269594380266 1.0 20.557132587847786 3.3485061767233892 3.4929462464608005 0.991079700986355 1.0731164112103426 0.22825826958547202 0.05932116284463228 0.30187110009202506 7.153808308419147 0.01656919985523993 0.02295873721971046 2231.0339379829998 -3.3485061767233892 0.08203671022398762 KLDVVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDVVVR 7 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 ; 114.28 0.009524700000000002 1073790000.0 772200.0 955790.0 840170.0 813010.0 778140.0 970360.0 854550.0 825560.0 1207040.0 1052830.0 False True 768042.5609994862 987602.8923627442 958458.6331114458 915936.9826402061 877231.5166028747 903281.29718174 813212.1518019843 887167.4793087383 909581.1655073485 985637.4880268876 0.7792343232977097 1.0019940438140102 0.9724251002568397 0.9292838328154376 0.8900143584828263 0.9164437312444218 0.8250621163262819 0.9000951060462676 0.922835399988901 1.0 19.9106976034018 3.250175271490257 23.015158509772615 0.8985284935308574 0.9302308193562164 0.0 0.06812610243765442 301.4703120598275 597372.0720749138 0.018198757963320687 0.024396281612338883 1778.997228472274 -3.250175271490257 0.031702325825359035 KLDYGQHVVAGTPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLDYGQHVVAGTPGR 15 1 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ; 156.17 1.4105e-06 2498600000.0 2159000.0 2494200.0 2346900.0 2532100.0 2402800.0 2625600.0 2585000.0 2553400.0 3371700.0 2890800.0 False True 2147376.183887449 2577217.9392242637 2677323.120379511 2852663.6003779415 2708782.337488613 2444098.45199759 2459953.6743410323 2743947.673902477 2540789.7134652743 2706306.669061604 0.7934711200456965 0.9523007753285768 0.9892903679344872 1.0540799507274932 1.0009147774918898 0.9031121564819062 0.9089707764693227 1.0139086250908604 0.9388402809302755 1.0 21.367893898980874 4.734035086415108 3.531267506952369 0.9759892913709585 0.7726171494665529 0.595893421827282 0.0448444486784136 0.20585947372779861 4.559111794066942 0.011582625785792796 0.11085836333368143 54204.468012777535 -4.734035086415108 -0.20337214190440556 KLEAAEDIAYQLSR ddPTM_BT-474_Trastuzumab_2h_R1 5 KLEAAEDIAYQLSR 14 1 P35232 P35232 PHB Prohibitin 0 ;;;; 218.78 8.4282e-12 4720398000.0 3751275.0 4336116.0 4812557.0 3832919.0 4756489.0 6264170.0 4772932.0 4465754.0 6604660.0 4981726.0 False True 3731078.5522058345 4480440.999822522 5490123.194104671 4318166.15240196 5362199.680230924 5831142.67217007 4542047.044789127 4799011.240119329 4977030.040909796 4663787.981609798 0.8000103278532785 0.9606871104539382 1.17718112739114 0.9258924654013668 1.1497520259014982 1.25030183515275 0.9738965541957056 1.0289942979918345 1.0671647297293898 1.0 22.153070773636017 4.572655226239714 3.4670067292140225 1.0696385384567049 0.8031177211356578 0.44275249350767554 0.09394769415694072 0.23435117091316487 4.788406268857036 0.022902606664820704 0.12423361760278641 37381.37106116899 -4.572655226239714 -0.26652081732104704 KLEAAEER ddPTM_BT-474_Trastuzumab_2h_R1 7 KLEAAEER 8 1 P16949;P16949-2;A2A2D0;E5RIR6;E7EVN3;Q9H169-3;Q9H169;Q9H169-4;Q9H169-2;E5RGX5;Q93045;Q93045-2 P16949;E5RGX5 STMN1;STMN4;STMN2 Stathmin;Stathmin-4;Stathmin-2 0 ;;;;;; 138.66 0.0011157 25925800000.0 30872120.0 32262960.0 30290670.0 27546460.0 25149380.0 33613890.0 35548350.0 29021640.0 45607730.0 34401370.0 False True 30705907.936134968 33336813.120228823 34555333.04477653 31033839.01159779 28352004.470946103 31290240.90288589 33828740.50261553 31187382.145701863 34368316.05377156 32205845.11410537 0.9534265543209277 1.035116855406726 1.0729522210128912 0.9636089008577431 0.8803372297946195 0.9715702473269839 1.0503913306035049 0.968376455739786 1.0671452940298431 1.0 24.94081921441013 -0.012972199667772966 7.226798953600191 0.9999999981270273 0.9946940626607068 7.866381028198699e-05 0.05751853187468859 0.0 0.0 0.0566992720249708 0.013364146617787794 0.9705720941299152 0.012972199667772966 -0.005305935466320522 KLEAELLQIEER ddPTM_BT-474_Trastuzumab_2h_R1 4 KLEAELLQIEER 12 1 Q969G3;Q969G3-4;Q969G3-2;B4DGM3;Q969G3-5;A0A2R8Y855;A0A2R8Y7I9;A0A2U3TZQ7;J3QKS7;A0A2R8YES3;A0A2R8Y4T4;A0A2R8Y765;A0A2R8Y7U4;Q969G3-6;Q969G3-3;J3QR61 Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 0 ;;; 172.1 5.8784e-05 1091410000.0 1477650.0 1537910.0 1472970.0 1540970.0 1483890.0 1726740.0 1738930.0 1622340.0 2000420.0 1703410.0 False True 1469694.4965823472 1589098.4046637742 1680351.3727152455 1736056.644000786 1672854.5957948968 1607374.5281087414 1654811.3125423035 1743407.2488755982 1507443.2952546787 1594696.9154373272 0.9216136824214654 0.9964892947873937 1.0537120605481503 1.0886436332791753 1.0490109936257923 1.0079498571475807 1.0376964403223232 1.093253038868197 0.9452851389264021 1.0 20.604850823944346 4.606082279537335 2.674389485098263 1.0418477189429134 0.9139117357213019 0.3944160960037797 0.04170805952487777 0.3190028173580496 3.5522649596674714 0.010153793286325447 0.07815106228067797 40372.18731068672 -4.606082279537335 -0.12793598322161148 KLECLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLECLK 6 1 J3KT09;G9BQT7;O75952-4;O75952-3;O75952-2;O75952;Q92688;Q92688-2 J3KT09;Q92688 CABYR;ANP32B Calcium-binding tyrosine phosphorylation-regulated protein;Acidic leucine-rich nuclear phosphoprotein 32 family member B 0 ; 91.041 0.077516 2975000000.0 2767500.0 2830600.0 2899600.0 2247300.0 1747950.0 2530100.0 2735000.0 2191400.0 4001200.0 2486600.0 False True 2752600.0874981573 2924814.8098661657 3307838.476224994 2531807.9495791406 1970541.0715886531 2355200.142214769 2602697.6012853854 2354933.3957037255 3015157.8733331175 2327903.059114637 1.1824375919438175 1.2564160687080115 1.4209519864985496 1.087591658796159 0.8464875991606378 1.0117260394470695 1.118043808179564 1.0116114528408966 1.295224842601419 1.0 21.150599550660342 3.5794156716138485 6.923547006612858 1.042046717410531 1.2818849195965556 0.4493934671281048 0.11905459833176286 0.22642975966186915 13.300988736495603 0.03185302681369976 0.04945019724440193 3796.782084483881 -3.5794156716138485 0.23983820218602458 KLEDGPK ddPTM_BT-474_Trastuzumab_2h_R1 9 KLEDGPK 7 1 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;;;; 91.069 0.026738 114740220000.0 87056900.0 71444100.0 62997900.0 59722100.0 58824500.0 71624500.0 86943000.0 81540300.0 126754400.0 81820700.0 False True 86588195.32333094 73822073.6796295 71867456.732437 67282911.73655517 66315451.394872114 66673266.90093745 82737234.93548657 87625251.23925377 95517476.54194123 76598832.87577452 1.1304114184579919 0.9637493276085777 0.938231746285081 0.8783803774878972 0.8657501544758567 0.8704214463563169 1.080137018140565 1.1439502137240334 1.2469834455160478 1.0 26.19081907441451 2.078382477788189 4.8040437311800215 1.139043565974085 0.9363310502734769 0.47981033600604817 0.0908000662700623 0.16881486447195165 7.1306435684198926 0.03631847259835032 0.02602706034293517 119.77949501562706 -2.078382477788189 -0.2027125157006081 KLEDNPK ddPTM_BT-474_Trastuzumab_2h_R1 6 KLEDNPK 7 1 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ;;;;; 119.27 0.007726100000000001 23310390000.0 21908030.0 19822800.0 16870930.0 16697050.0 17152640.0 20658940.0 24029390.0 23439130.0 35410100.0 22850640.0 False True 21790079.60069096 20482589.914864372 19246210.299247675 18810894.81801288 19336927.03233755 19230836.103713844 22866996.604515933 25188276.902090475 26683755.326030444 21392292.591782857 1.018594875102863 0.9574752134201868 0.8996796494191778 0.879330475558214 0.9039202763973597 0.8989609702281622 1.0689362304860928 1.1774463533546526 1.2473537004762234 1.0 24.350587767264198 2.0657215315260244 3.4825832357223563 1.1560750449353165 0.9235364560618071 0.6691921247926443 0.06886928791436375 0.1270860956332719 3.0905312887600096 0.029339760080730318 0.019393563130472784 116.33798341319519 -2.0657215315260244 -0.23253858887350942 KLEDQLQGGQLEEVILQAEHELNLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLEDQLQGGQLEEVILQAEHELNLAR 26 1 A0A087X1G1;H7BYD0;Q16718-2;Q16718;A0A087WXR5 A0A087X1G1 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 0 ;; 238.21 3.4827e-45 233828000.0 204107.0 238146.0 235222.0 191533.0 240896.0 421322.0 227431.0 203397.0 315096.0 265254.0 False True 203008.11059041956 246072.54564770314 268339.21301372425 215781.05816167916 271572.67769754294 392197.0018253075 216429.29365920933 218575.5169690385 237444.81287008192 248325.26262462515 0.8175088931539432 0.9909283616450765 1.080595708135232 0.86894525301624 1.0936167944703201 1.5793681145448442 0.871555682139233 0.8801984729980649 0.9561846843951983 1.0 17.92187151166372 4.712381448073711 3.18715686359859 1.034968456448856 0.7919545073657136 0.10320885861525053 0.19690313484052185 0.8254214683576749 13.493706885644148 0.050982602100073125 0.48188287148790004 51568.13772701867 -4.712381448073711 -0.24301394908314233 KLEDSTR ddPTM_BT-474_Trastuzumab_2h_R1 6 KLEDSTR 7 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;;;; 160.88 0.0021324 2254160000.0 3169290.0 3405570.0 2954540.0 2654300.0 2640150.0 3012810.0 3590400.0 2919840.0 4088350.0 3383600.0 False True 3152226.89478122 3518922.338739466 3370513.5506779496 2990334.107848488 2976357.453104939 2804541.5360918837 3416718.6353400564 3137733.2874470945 3080830.9235832845 3167655.7511542975 0.9951292509081975 1.11089165464308 1.0640403552215958 0.9440211761517351 0.9396088738558004 0.8853681575309771 1.0786268785978401 0.9905537513991856 0.9725901946449282 1.0 21.59498412662037 3.7509291819508577 24.42248286100498 0.9750618782408281 1.0621075579146984 0.3369601482028717 0.05359930000266821 645.0992554130806 1273782.0624429493 0.014274610104320662 0.025493321226558476 5635.457539791001 -3.7509291819508577 0.08704567967387022 KLEDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEDVK 6 1 H0YC42;P55327-2;P55327-4;P55327-3 H0YC42;P55327-2 0 ; 86.47200000000002 0.085844 1565250000.0 1576140.0 1582870.0 1407900.0 1338340.0 1374950.0 1733420.0 1717100.0 1471360.0 2243940.0 1774100.0 False True 1567654.2373656174 1635554.8710848803 1606120.082313823 1507773.7067769086 1550041.7325328628 1613592.7554317703 1634037.3130410034 1581160.3546146923 1690951.0542554997 1660875.4191165736 0.9438722611714364 0.9847546975888406 0.9670322432540575 0.9078186656401355 0.9332679108209911 0.971531480844028 0.9838409878509458 0.9520041879214023 1.0181083028821774 1.0 20.663512431328062 1.4335227427563553 1.096906075715904 1.006906596457709 0.9517108017333102 0.40515906738151763 0.02403862836391606 0.5075682401344848 1.2014655701892571 0.023116979807409996 0.00806610728907664 27.134557443246667 -1.4335227427563553 -0.05519579472439884 KLEDVKNS(ph)PTFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLEDVKNSPTFK 12 2 H0YC42;P55327-2;P55327-3 H0YC42;P55327-2 1 KLEDVKNS(0.981)PT(0.019)FK 60.474 0.07220900000000001 607640000.0 302390.0 184500.0 186910.0 171890.0 173890.0 270000.0 225660.0 216210.0 414610.0 266950.0 True False 300761.9658386876 190640.97096739477 213225.3033491564 193651.2563757214 196033.86077322043 251335.53551163475 214743.963695086 232344.6880921343 312434.9209893638 249913.02245260676 1.2034665616343534 0.7628292799489779 0.8531980496918371 0.7748746122761379 0.7844083467495019 1.0056920325522363 0.8592748052407305 0.9297022052390084 1.2501746324508305 1.0 17.93106655368576 1.3851742981777648 6.169418647356565 1.1225567681293007 0.8831260931571135 0.3100854683521722 0.13661072589027948 0.22624146571268608 11.620797309626528 0.08850638831304436 0.032181087343430725 24.27584177462137 -1.3851742981777648 -0.23943067497218717 KLEEEGEQFVK ddPTM_BT-474_Trastuzumab_2h_R1 3 KLEEEGEQFVK 11 1 H0YF61;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 H0YF61 SCP2 Non-specific lipid-transfer protein 0 ;; 230.59 2.7031e-12 5282750000.0 7345100.0 6026800.0 5425000.0 4933180.0 4887780.0 7740300.0 7171900.0 6782300.0 9842800.0 6931800.0 False True 7305554.797717326 6227398.394722463 6188792.845054689 5557720.082189656 5510209.810858193 7205231.279706324 6824967.797681422 7288429.665821563 7417173.8267627675 6489406.589387444 1.1257662310240484 0.9596252459980762 0.9536762352316823 0.8564296296796325 0.849108425394304 1.110306648298092 1.0517090744233446 1.123127294526562 1.1429664214433046 1.0 22.629655129260545 2.7180341659659875 24.767859851852716 1.0927616888227134 0.9446415757813222 0.41990807094678273 0.08003791216627383 689.2788952366524 831704.4589483638 0.026721827521862144 0.025220664934108676 522.4372875468695 -2.7180341659659875 -0.14812011304139117 KLEEELEGMR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEEELEGMR 10 1 P15924 P15924 DSP Desmoplakin 0 ; 127.17 0.00058218 383780000.0 723540.0 630320.0 589220.0 547070.0 540740.0 797060.0 692100.0 619320.0 849810.0 722030.0 False True 719644.5410328511 651299.8201635142 672177.054407949 616329.005907649 609600.0337829167 741961.1182774208 658620.4789212497 665536.8032432375 640385.7123705923 675949.4272390167 1.0646425783247002 0.9635333560734176 0.9944191493045916 0.9117975118717191 0.9018426663558089 1.0976577364789484 0.97436354315951 0.9845955576317142 0.9473870182660143 1.0 19.366555786327726 KLEEEQIILEDQNCK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEEEQIILEDQNCK 15 1 P35579 P35579 MYH9 Myosin-9 0 ; 242.19 1.0390999999999997e-17 1613280000.0 2666810.0 2022930.0 1633340.0 1641310.0 1640370.0 2720000.0 2312370.0 2367350.0 3890910.0 2623470.0 False True 2652452.1912704436 2090262.0021629934 1863300.074754216 1849099.677712692 1849261.3962652693 2531972.8021912863 2200511.8289887714 2544013.678159724 2932047.3660228304 2456037.898534332 1.079972012179993 0.8510707442301199 0.7586609619770774 0.7528791305770008 0.752944975877138 1.0309176432913634 0.8959600461792351 1.0358202044349123 1.1938119390472608 1.0 21.2279013920867 1.9942597007116716 1.2666911585228904 1.091311410776467 0.8414463337169995 0.4075153731243015 0.11353605272945148 0.4426071202552266 1.3166549929314177 0.0849273817636609 0.03943670566709615 98.68694403582406 -1.9942597007116716 -0.24986507705946748 KLEEIIHQITNVEALIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEEIIHQITNVEALIAR 18 1 Q15042-4;Q15042;Q15042-3 Q15042-4 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit 0 ; 199.01 1.0839000000000001e-15 176533000.0 151424.0 176758.0 153475.0 139854.0 154440.0 172512.0 175115.0 161356.0 209545.0 185728.0 False True 150608.75000878784 182641.28317753255 175082.9459713858 157559.50206044642 174107.01856240246 160586.65148956724 166644.0184457369 173397.2040691659 157905.44250914393 173874.6800302593 0.8661913855575607 1.0504190900351196 1.0069490620538668 0.906167028074625 1.0013362413210636 0.9235769777498394 0.9584145225557623 0.9972539074636381 0.9081566245393737 1.0 17.407688334313267 KLEELEKEEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEELEKEEELR 12 2 Q9BZE4-2;Q9BZE4;Q9BZE4-3 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 0 ; 145.29 3.5866e-05 474450000.0 1050710.0 911640.0 788260.0 722740.0 782910.0 1144760.0 1052180.0 1040130.0 1663440.0 997610.0 False True 1045053.0941048559 941983.3863019826 899240.1563212553 814238.8098957979 882608.9478288688 1065625.4356751824 1001282.0336820696 1117749.7822731212 1253507.5009540233 933941.6757031085 1.1189704039260249 1.0086105062104866 0.9628440187598133 0.8718304698018818 0.9450364736795855 1.1409978410835313 1.0721033868932603 1.196808977853606 1.3421689314917153 1.0 19.832972931436824 2.4257742153011175 1.7706528019371945 1.1813560067922912 0.9780341629835331 0.3842447757074092 0.10305385611237053 0.34480216395647295 2.199724828265261 0.04698951410633651 0.035490583982722514 266.54725557612215 -2.4257742153011175 -0.20332184380875817 KLEELELDEQQR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLEELELDEQQR 12 1 Q02750;Q02750-2 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 0 ;; 160.48 0.00010042 1019130000.0 1432630.0 1438120.0 1392800.0 1394890.0 1397080.0 1784880.0 1615860.0 1541730.0 2019520.0 1746810.0 False True 1424916.8792601575 1485986.9548381036 1588894.1335653774 1571482.9309787045 1574989.8568580777 1661495.4467555813 1537694.6786153577 1656781.7213463099 1521836.3561815673 1635327.09028072 0.8713344796456325 0.9086787369143499 0.9716063183987419 0.960959394801528 0.9631038745818826 1.0160019097282669 0.9402979304595249 1.0131194738918603 0.9306005906869244 1.0 20.641147794851832 4.440343508437514 1.6700370034194008 0.977504954855891 0.859097366445704 0.617748174661543 0.02722618346718268 0.3294331844942814 1.366266698392964 0.006745592087108413 0.052447183313983826 27564.080427018107 -4.440343508437514 -0.11840758841018695 KLEELEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLEELEQK 8 1 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224;J3KPM9;A0A669KBI6;P42224-2;A0A669KB52;E7EPD2;A0A669KB75 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription 0 112.71 0.0047918 377740000.0 533210.0 420350.0 364010.0 359290.0 371690.0 520040.0 509590.0 475960.0 744000.0 538200.0 False True 530339.2566051999 434341.0956430588 415259.44396836055 404776.0771611661 419022.5183207678 484090.85884248355 484939.1848771558 511478.55207590805 560651.1690892329 503851.6152237981 1.0525703214618785 0.8620416855270684 0.8241701156081693 0.8033636589244134 0.8316387318410176 0.9607806032882572 0.9624642855650233 1.0151372678416883 1.1127307170389955 1.0 18.942639395661665 2.135521489074492 1.449494367804979 1.0477994396337387 0.8701837931430477 0.49005925464282607 0.07230916819194876 0.34844134817903516 1.398742124092605 0.046546514440482356 0.024924966506846787 136.62226752932892 -2.135521489074492 -0.17761564649069095 KLEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLEELK 6 1 Q15172;Q15172-2;Q9Y2C4-3;Q9Y2C4-4;Q9Y2C4;Q9Y2S6 Q15172;Q9Y2S6 PPP2R5A;EXOG;TMA7 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform;Nuclease EXOG, mitochondrial;Translation machinery-associated protein 7 0 102.72 0.056601 1359900000.0 1584900.0 1344300.0 1331900.0 1170500.0 1037800.0 1531400.0 1641900.0 1427300.0 2101000.0 1520900.0 False True 1576367.0744989421 1389044.2128534908 1519419.942917667 1318685.1799859307 1169957.678477477 1425537.922527842 1562475.0243328994 1533812.3736825462 1583236.7019576326 1423834.8598919993 1.1071277427626072 0.9755655321986235 1.0671321413165276 0.9261503683692333 0.8216947845807208 1.00119610966399 1.0973709580698257 1.0772403576345144 1.1119524788694415 1.0 20.441350397769934 2.3418442948880562 5.442918997793036 1.0782473892182232 0.974958834390951 0.23911235169826428 0.07722103642162943 0.28536414060575077 12.786288244678266 0.02841456083687558 0.023520233017895797 219.70720279183013 -2.3418442948880562 -0.10328855482727217 KLEEQAR ddPTM_BT-474_Trastuzumab_2h_R1 5 KLEEQAR 7 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 0 ;;;; 113.26 0.009894 2455170000.0 3917960.0 3986470.0 4287150.0 3247540.0 2667610.0 3107460.0 3978550.0 3200050.0 5433350.0 3543550.0 False True 3896866.138686279 4119157.244077998 4890743.455424185 3658678.2310222257 3007314.32133677 2892648.6043740218 3786092.336963063 3438853.980524646 4094373.6956599243 3317397.6052142153 1.1746756350704743 1.2416833115221384 1.474271111710281 1.1028760089751053 0.9065281522510106 0.8719631918186165 1.1412838578686388 1.0366119439887242 1.2342125312999788 1.0 21.661620505385514 3.4958363639693526 22.483651004264562 1.0315259032208022 1.2908935405891815 0.49288724091714764 0.12032817900116925 173.0162659927628 207854.3134125323 0.032977006688151664 0.04998099498892867 3132.1053688660763 -3.4958363639693526 0.2593676373683793 KLEEVVQILGDKFPCTLVAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEEVVQILGDKFPCTLVAQK 21 2 Q9BY32 Q9BY32 ITPA Inosine triphosphate pyrophosphatase 0 ; 222.95 2.1008e-25 669400000.0 680190.0 567200.0 508870.0 526040.0 534220.0 726960.0 693680.0 667850.0 1003100.0 788950.0 False True 676527.9326162126 586078.9091203591 580514.4728226688 592636.6100639033 602249.7504299836 676706.9662797705 660124.048285064 717688.3582735852 755899.4458513557 738598.5355459226 0.915961649065779 0.7935013148748918 0.7859675383645208 0.8023798877774189 0.8153952674504572 0.9162040455165458 0.8937521759329573 0.9716893870404414 1.023423970496564 1.0 19.49443087648382 2.04732312381262 1.0247468926849617 1.0131176973587972 0.8175963146049016 0.7754500758250986 0.040011424651631135 0.23705778115133008 0.4602218122296172 0.031266220458255445 0.015196159725854174 111.5123899587432 -2.04732312381262 -0.19552138275389563 KLEFDISEDEIFTSLTAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLEFDISEDEIFTSLTAAR 19 1 Q9H0R4;K7EMY7;K7ER15;K7EQD2;K7EJQ8;A0A1B0GXB1 Q9H0R4 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 0 130.25 2.8745e-05 205720000.0 85286.0 85759.0 93435.0 92338.0 88156.0 102150.0 106370.0 95102.0 147810.0 105630.0 False True 84826.82965216531 88613.43647258966 106589.8358484211 104027.98133237162 99382.14405845098 95088.6109352353 101224.47672713951 102198.994158171 111384.20605252615 98888.60296560708 0.8578018811901673 0.896093521549788 1.0778778610664819 1.0519713921790563 1.004990879414239 0.961573003193367 1.023621263638893 1.0334759627832468 1.1263603965693092 1.0 16.59351663771817 4.332337993657654 5.558954045495962 1.0323550803388255 0.8686443760577028 0.6848202400557091 0.043055302270221696 0.11197244375563098 5.235286104221639 0.010847725299088062 0.030755579670700587 21495.02693491697 -4.332337993657654 -0.16371070428112267 KLEGDSTDLSDQIAELQAQIAELK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEGDSTDLSDQIAELQAQIAELK 24 1 P35579 P35579 MYH9 Myosin-9 0 ; 238.07 2.959699999999999e-37 526660000.0 731600.0 505000.0 463120.0 393230.0 434780.0 571620.0 588460.0 584790.0 847310.0 628390.0 False True 727661.146888402 521808.6197210529 528323.2704887984 443012.87768121966 490146.65585704066 532105.2548487429 559993.9416644966 628429.9993034513 638501.8038723086 588285.6122082543 1.2369181427996723 0.8869987789814101 0.8980727380117719 0.7530574749538362 0.8331780442788184 0.904501561497269 0.951908273878127 1.0682396207932174 1.0853602240509626 1.0 19.166157226904875 1.8838175525824201 3.2121400563071867 1.0578048172096681 0.9057534833159055 0.19105206173958655 0.11962566827524028 0.3820001935182163 6.820029045023432 0.06337004598234736 0.03391786776582857 76.52750467862789 -1.8838175525824201 -0.15205133389376257 KLEGGGER ddPTM_BT-474_Trastuzumab_2h_R1 3 KLEGGGER 8 1 Q92522 Q92522 H1FX Histone H1x 0 ;; 82.749 0.031212 494150000.0 788790.0 810420.0 731270.0 715160.0 639480.0 720060.0 793120.0 712730.0 1087920.0 874430.0 False True 784543.2422828075 837394.3397907646 834226.4596872155 805699.1826729925 720913.9875050853 670283.9470389177 754753.7555873729 765917.531769607 819816.693381125 818623.1287628119 0.9583692601850751 1.022930223161813 1.0190604569748536 0.9842125813017872 0.8806420954592441 0.8187942943316545 0.921979515443248 0.9356167751174352 1.001458014776735 1.0 19.642839902615357 3.380889762304236 6.181495005715549 0.9191695258651417 1.0022412327316705 0.2925535571039468 0.052734031881332084 0.2441991028085024 13.125548754760363 0.015325334901677494 0.020838145709182354 2403.7525740208334 -3.380889762304236 0.08307170686652887 KLEHLITELVHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLEHLITELVHQR 13 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 178.67 5.8573e-06 1040700000.0 987870.0 1054600.0 1008900.0 932690.0 928640.0 1156300.0 1102100.0 842550.0 1391600.0 1168700.0 False True 982551.417682675 1089701.7234808381 1150944.3504839954 1050768.4583691387 1046896.7995194865 1076367.7026374198 1048787.2125691508 905425.3593822104 1048658.8264846455 1094112.5654255901 0.8980350365508142 0.9959685665953061 1.0519432706051581 0.9603842342861757 0.9568456049238978 0.9837815016946927 0.9585734098220428 0.8275431504892883 0.9584560671567975 1.0 20.061329743676787 1.9810923317145246 24.324871422443753 0.9053929620950886 0.9770154766820496 0.07618741665736961 0.0554682637143572 726.6241216184686 934806.5055627889 0.022082254710705733 0.01452428352400664 95.73975939479827 -1.9810923317145246 0.071622514586961 KLELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLELEK 6 1 Q96EX2-3;Q96EX2-5 REV__A0A087WZP0 0 101.64 0.05819 1524300000.0 1559800.0 1239800.0 1288700.0 987540.0 1007800.0 1546200.0 1454400.0 1349200.0 1966400.0 1446200.0 False True 1551402.2101100734 1281065.9935250743 1470137.7584187994 1112562.4627452437 1136137.3563014069 1439314.8333632974 1384045.1156524562 1449884.1550987803 1481807.0684100345 1353902.2778458865 1.1458745845220213 0.9462027019876961 1.0858521936737178 0.8217450261738061 0.8391575779819556 1.0630862041633504 1.022263673161499 1.0708927659133602 1.0944712130683831 1.0 20.36869218094391 2.6049106246408043 18.523652745593203 1.0535204207358857 0.9636055413189616 0.15741025586362678 0.0948683308881412 4.652526266186817 662.1464973876317 0.031434913778562085 0.02963694448886983 402.63416595440094 -2.6049106246408043 -0.08991487941692411 KLELSDNIISGGLEVLAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLELSDNIISGGLEVLAEK 19 1 Q9BTT0;Q5TB19;Q9BTT0-3;E9PLC4 Q9BTT0 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 153.11 7.8663e-08 77527000.0 138980.0 140680.0 111990.0 112880.0 113480.0 167020.0 146270.0 140330.0 189930.0 166810.0 False True 138231.74712212966 145362.44875714404 127757.21856546986 127170.59642615299 127931.0053513432 155474.3005227897 139194.36129433784 150802.13718130122 143124.29643161 156164.042986774 0.8851701357004245 0.9308317457524792 0.8180962539263279 0.8143398057190633 0.819209101561094 0.9955832184490593 0.8913342574393174 0.9656649142598921 0.916499686446589 1.0 17.25270278338176 2.743559022234649 24.984895582752998 0.9476894392808357 0.8536782734236292 0.5496403076714766 0.04521963391564604 355.070291087311 1774845.341835314 0.01435503524955323 0.014810466373653346 554.0628380216087 -2.743559022234649 -0.09401116585720648 KLELSDNR ddPTM_BT-474_Trastuzumab_2h_R1 4 KLELSDNR 8 1 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ;;; 117.01 0.0034643 8659600000.0 18780800.0 21412100.0 22823300.0 17197600.0 11680400.0 16761700.0 20830400.0 15014900.0 30626300.0 18333400.0 False True 18679686.259543054 22124788.804612193 26036622.25632011 19374814.396690328 13167829.704845173 15603003.131797668 19822753.9721445 16135388.082117327 23078858.736394573 17163346.715986572 1.0883475448377504 1.2890719491207592 1.5169898206431176 1.1288482786777192 0.7672064150857113 0.9090886171555608 1.1549468935263574 0.9401073315781842 1.3446595887326611 1.0 24.032827558528446 3.483589046106701 24.981805690806677 1.0098274325353986 1.3015115213875077 0.34147456844779067 0.17296458886983226 304.6538828555846 1176724.9738785198 0.047195861109027994 0.0662720230240348 3045.012263879854 -3.483589046106701 0.29168408885210906 KLEMTELLLQQFSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEMTELLLQQFSSR 15 1 Q08379;B7ZC06 Q08379 GOLGA2 Golgin subfamily A member 2 0 ; 219.97 2.7775e-12 1034050000.0 757730.0 859290.0 792080.0 757270.0 761560.0 868400.0 833520.0 762530.0 959770.0 828220.0 False True 753650.4658717175 887890.9481982253 903597.9791172191 853140.3043553567 858540.1518802351 808369.551993717 793199.4532443855 819433.8606488839 723247.5437591024 775362.2905251835 0.9719978326018929 1.1451304236072941 1.1653880903921396 1.100311834584438 1.1072761241699178 1.0425701144766484 1.0230049396742267 1.05683997102032 0.9327865858284367 1.0 19.564511046261483 2.082816869726145 0.9361938242635209 0.9849340898883291 1.1050422255882284 0.39852449993397976 0.055452980117311576 0.5793965857041627 0.9423804981527334 0.044046629306571196 0.022374467794792 121.0087764568901 -2.082816869726145 0.12010813569989931 KLENDTISK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLENDTISK 9 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 ; 150.94 0.00013475 444200000.0 893110.0 803750.0 795510.0 732490.0 717320.0 900220.0 889080.0 837560.0 1318380.0 979710.0 False True 888301.5949938495 830502.3328728644 907510.8933031254 825223.1588961089 808666.4501112576 837989.9102899409 846071.8037845741 900062.9802435032 993482.914386911 917184.0690280702 0.9685096209043108 0.9054914503180791 0.989453397576786 0.8997356002602495 0.8816839251996521 0.9136551087045696 0.9224667461583225 0.9813329849888147 1.083188149396984 1.0 19.80685177077091 1.5196691174093007 3.485630639543974 1.0410791406302358 0.9246836730595213 0.6241214228055744 0.035836358191854614 0.12465604922330088 3.257232492205533 0.02382412289420304 0.0092043598305622 33.08789336231615 -1.5196691174093007 -0.1163954675707145 KLENEVEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLENEVEQR 9 1 P12270 P12270 TPR Nucleoprotein TPR 0 103.08 0.0055798 317770000.0 486500.0 555490.0 498960.0 480830.0 453900.0 545010.0 530000.0 481990.0 697900.0 552350.0 False True 483880.7380552316 573979.1488492042 569209.2309619331 541703.02869939 511701.47452392196 507334.74151554186 504361.87520338385 517958.54129562766 525911.8963808801 517098.5501093732 0.935761158009212 1.1099995324446374 1.1007751440059885 1.0475817976763089 0.9895627717689217 0.9811180894013991 0.9753689603204353 1.0016631088717471 1.0170438425511787 1.0 18.980079734096734 3.2829698540358314 5.258098758614841 0.9927486849648531 1.0576161912007551 0.24828911522053443 0.04545617794225929 0.23464287444610057 14.764598519781941 0.012589799172600929 0.01683344236075301 1918.5355634964653 -3.2829698540358314 0.06486750623590198 KLENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLENLK 6 1 P39687;H0YN26 P39687;REV__Q9Y2X3 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ; 89.369 0.080564 4528700000.0 2461300.0 2918900.0 2650300.0 2539400.0 2374600.0 2708800.0 2961700.0 2588800.0 3285100.0 2683100.0 False True 2448048.6342761405 3016053.821987687 3023439.2031794386 2860887.779629452 2676991.2346431063 2521547.031829322 2818431.256207289 2781989.401660038 2475531.1230847244 2511862.2608825234 0.9745950932102613 1.2007242072772015 1.2036644087789976 1.1389508987743227 1.065739661100114 1.003855613859733 1.122048489719757 1.1075405865139307 0.9855361743501675 1.0 21.26032592487937 3.227271648544954 6.207633709777993 1.0592303427128174 1.140156411163608 0.21802781455293663 0.07308297720502634 0.24532648165774165 35.74744961663553 0.021052555217424305 0.026459449840677305 1687.608283996028 -3.227271648544954 0.08092606845079064 KLEPGGFGEKPVRPGGGDTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEPGGFGEKPVRPGGGDTSPR 22 3 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 KLEPGGFGEKPVRPGGGDT(0.428)S(0.572)PR;KLEPGGFGEKPVRPGGGDT(0.181)S(0.819)PR 100.59 0.0046025 5460800000.0 3378800.0 3158200.0 2904600.0 2649800.0 2535500.0 3330300.0 3091500.0 3020300.0 4170000.0 3235300.0 True False 3360608.916219969 3263318.7778277816 3313542.4327642145 2985264.4083098844 2858380.8959140885 3100084.199682953 2941952.334323139 3245690.1227726364 3142359.3751372304 3028820.384120317 1.1095438124489563 1.0774223506078164 1.0940042698261856 0.9856194919848035 0.9437274362323302 1.02352857103586 0.9713195109711308 1.0716020467206762 1.0374862080340526 1.0 21.530324594924526 3.7473504940599773 24.196924031419275 1.0078111607865945 1.0920333778380693 0.5851978229986825 0.03422390157125306 338.25947334871563 931161.9494023337 0.009709139746660668 0.017169639098014465 5589.210857814499 -3.7473504940599773 0.08422221705147481 KLERPPET(ph)PTVDPTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLERPPETPTVDPTVK 16 2 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 KLERPPET(0.998)PT(0.002)VDPTVK;KLERPPET(0.995)PT(0.005)VDPTVK 163.45 3.680699999999999e-07 231250000.0 577900.0 321690.0 268370.0 341220.0 234002.0 370410.0 295260.0 367560.0 617100.0 399960.0 True False 574788.6506107259 332397.25718428846 306154.16328614333 384418.41701392556 263800.76766148227 344804.42855135107 280977.1457972668 394989.19363186194 465023.9737163507 374434.2103770162 1.5350858299832528 0.8877320714087504 0.8176447418569954 1.0266647821171475 0.7045316916845349 0.9208678560758884 0.750404578455457 1.0548961144179347 1.2419377311921365 1.0 18.51435272796529 4.740703963874546 24.715265354637413 0.9248998420627328 1.5350860785916225 0.5902755885850419 0.15010672200721048 113.9377276476721 1313728.5877390609 0.03582207800826736 0.23612565032888314 55043.23671730766 -4.740703963874546 0.6101862365288897 KLES(ph)TESR ddPTM_BT-474_Trastuzumab_2h_R1 5 KLESTESR 8 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 KLES(0.493)T(0.493)ES(0.015)R;KLES(0.985)T(0.015)ESR;KLES(0.477)T(0.477)ES(0.046)R;KLES(0.5)T(0.5)ESR;KLES(0.49)T(0.49)ES(0.02)R 146.16 0.00034162 3830530000.0 6189420.0 4964990.0 4355030.0 4727100.0 3898160.0 5708150.0 5136400.0 4829200.0 7868470.0 5231150.0 True False 6156096.850429206 5130246.690750163 4968180.369400655 5325550.375319518 4394567.569795487 5313559.026039774 4887932.709046539 5189579.4261807185 5929391.000596171 4897293.5283871675 1.257040611257092 1.0475677353241504 1.0144746972184926 1.0874476574560947 0.8973461656570862 1.0849990908733003 0.9980885729461858 1.0596831486818823 1.2107485422767594 1.0 22.223553238570258 4.737959812117103 6.272506665904833 1.0418041417082649 1.2619208685371714 0.4115864701977727 0.07621387920603544 0.1158162784329363 25.066425180529418 0.01741501573334372 0.1088650541628288 54696.53465558003 -4.737959812117103 0.2201167268289066 KLEST(ph)ESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLESTESR 8 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 KLES(0.116)T(0.839)ES(0.045)R 97.633 0.015655000000000002 476140000.0 611860.0 504820.0 477630.0 488750.0 393780.0 645330.0 517360.0 501640.0 895800.0 631840.0 True False 608565.8137440361 521622.6285298655 544876.1523656169 550625.6998873336 443925.5488830797 600719.8560434199 492333.3202928728 539074.9240763056 675042.0931050195 591515.4302545601 1.0288249175209823 0.8818411183380017 0.9211528972813576 0.9308729269334031 0.7504885353405495 1.0155607534783981 0.8323254054099586 0.9113454975203494 1.1412079188103572 1.0 19.174056277594232 1.2572575643185793 23.541093529582675 1.0706037992367305 0.9041455071953501 0.3785078568958091 0.08261336406712916 96.14040676873586 121050.88703372801 0.051033883761625015 0.018546583514992235 18.082462133705402 -1.2572575643185793 -0.1664582920413804 KLESTESR ddPTM_BT-474_Trastuzumab_2h_R1 8 KLESTESR 8 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;; 179.8 0.0003887 26459780000.0 30090900.0 32835600.0 29762800.0 29045600.0 28238200.0 30119300.0 34286600.0 29902400.0 39159900.0 32137700.0 False True 29928893.93781331 33928513.09646064 33953143.537104875 32722769.98188753 31834167.389075596 28037223.68420589 32628026.170468595 32133868.92931055 29509467.360776115 30086644.471530784 0.994756792042172 1.1276934896666588 1.1285121399707012 1.087617797087713 1.058083011523548 0.9318827066519784 1.0844687649146973 1.0680442931984966 0.9808161687388962 1.0 24.842619877754576 2.9973556695458567 17.477346527820004 1.0241208714377728 1.088603859039323 0.2764189256008648 0.0533526404693 3.2894777785318423 21754.28972177008 0.016019135267034995 0.018631552179756934 993.929703268104 -2.9973556695458567 0.06448298760155025 KLEVEANNAFDQYR ddPTM_BT-474_Trastuzumab_2h_R1 5 KLEVEANNAFDQYR 14 1 P47756-2;B1AK88;B1AK87;P47756;B1AK85;A0A6I8PRV6 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ;;;; 258.96 3.3979e-24 7167950000.0 4818390.0 4941110.0 4983420.0 4403590.0 4491710.0 5265740.0 5496480.0 4691850.0 6194680.0 5385130.0 False True 4792448.323613453 5105571.859385936 5685042.21933685 4961084.042489745 5063702.644049014 4901731.788018652 5230594.263807353 5041979.671731556 4668084.118459253 5041446.3929582555 0.950609795297517 1.0127196565091416 1.1276609481115478 0.9840596637939544 1.004414655905465 0.972286801435645 1.0375185722718967 1.0001057789236925 0.9259414371596801 1.0 22.265406272212328 KLEVEYEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLEVEYEQK 9 1 Q9Y2W2;F5H5G4 Q9Y2W2 WBP11 WW domain-binding protein 11 0 ; 98.353 0.0097347 443310000.0 689250.0 583860.0 569270.0 536780.0 555260.0 734030.0 656530.0 650860.0 919290.0 665670.0 False True 685539.1545828735 603293.427149177 649418.2678164578 604736.2929627072 625969.0697161334 683288.2338207607 624771.1357118449 699430.4782001121 692743.2973548927 623186.3706912404 1.1000547939173817 0.9680786607704559 1.0420931816851529 0.9703939646368256 1.004465275807952 1.096442839503783 1.0025430033375837 1.1223455953061063 1.1116149677447207 1.0 19.24930415592501 2.7477269432123403 24.563148079773544 1.0726954285935646 1.013101299201192 0.1784251786658333 0.05203534692674079 733.1786405808109 1964709.8929339813 0.015326789778069833 0.016045212080190704 559.4057720817489 -2.7477269432123403 -0.05959412939237252 KLFEELVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLFEELVR 8 1 P14618-2;H3BTN5;H3BR70 P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ; 143.03 0.00097476 1278380000.0 1466170.0 1763630.0 1605170.0 1621850.0 1472880.0 1938120.0 2022230.0 1634050.0 2264300.0 1956480.0 False True 1458276.3036267993 1822331.358413152 1831163.9836122443 1827176.0437079743 1660442.5375562783 1804142.3262437382 1924407.009231205 1755991.1085377722 1706293.6050655227 1831615.7713732019 0.7961693311548077 0.9949310258706229 0.9997533392275724 0.9975760594909603 0.9065452282666296 0.9850004320999779 1.0506608641988464 0.9587115026975706 0.9315783537866555 1.0 20.804685462020856 4.7413011795519076 24.922613342662554 0.9804681058480984 0.7961692620953046 0.6779510634101767 0.03811953490219788 144.1409007775445 1310739.6347489585 0.009217126790256385 0.06364252306219056 55118.980936736836 -4.7413011795519076 -0.18429884375279382 KLFIGGLS(ph)FETTEESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLFIGGLSFETTEESLR 17 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 KLFIGGLS(0.996)FET(0.004)TEESLR 125.62 2.8366e-05 393670000.0 198170.0 199800.0 164460.0 153410.0 138160.0 200920.0 185850.0 171110.0 218750.0 234010.0 True False 197103.07473875696 206450.22221834943 187614.53848805407 172831.69027051816 155753.85706152252 187030.87331480632 176859.7254840548 183879.09707897442 164841.99359982484 219075.28145395924 0.8997047655519277 0.9423711376663776 0.8563930044635504 0.7889146101900154 0.7109604334538111 0.8537287825149394 0.807301144658 0.8393420556559612 0.7524445136201637 1.0 17.74106718680889 4.044247189332516 4.2609624057109405 0.8130996868355169 0.9197663318545205 0.21860706151139386 0.07280588983944974 0.2553831800752654 10.090999105902702 0.017214164444854893 0.03863943456565937 11072.538252705359 -4.044247189332516 0.10666664501900358 KLFIGGLSFETTDDSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLFIGGLSFETTDDSLR 17 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;; 256.66 6.7211e-27 3620801000.0 1254183.0 1373414.0 1417976.0 1460974.0 1478023.0 1427006.0 1549289.0 1395672.0 1832280.0 1569283.0 False True 1247430.618080832 1419127.2547437036 1617614.6955316635 1645933.158602961 1666240.4681213286 1328360.4340307994 1474343.9722112743 1499824.131718816 1380739.1452941108 1469130.0154092284 0.8490947737755928 0.9659643733767181 1.10106980224012 1.1203454706794511 1.1341681475735113 0.9041816722128454 1.0035490097863078 1.0208927160888737 0.9398345488908303 1.0 20.486530646828964 1.2613324789635665 24.18509914540872 0.9699172678893735 1.0175059501207597 0.03362557777974251 0.08777608645661127 536.2622993532517 569546.6678611819 0.06180171706121118 0.022533743709703673 18.252925405436375 -1.2613324789635665 0.04758868223138624 KLFIGGLSFETTDESLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLFIGGLSFETTDESLR 17 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;F8W646 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;; 232.84 2.4035999999999998e-17 4570720000.0 1557549.0 1850680.0 1881002.0 2004600.0 1986870.0 1782520.0 1996370.0 1697611.0 2115790.0 2165380.0 False True 1549163.329243963 1912278.765040315 2145830.731637524 2258382.154463731 2239886.117398868 1659298.5880007388 1899797.9562259985 1824295.3531139912 1594381.9046334778 2027183.594524912 0.7641948827072186 0.943317995570339 1.0585280669363437 1.114049147084284 1.1049251402035958 0.8185240806418472 0.9371612721003854 0.8999161980400352 0.7865009903097282 1.0 20.95104532360312 2.7287198595489337 24.676054513869715 0.8878800050712456 1.003941163809234 0.20033709573263403 0.10802179380381684 968.4826280499328 2428499.419379402 0.036396210119525034 0.03470297976497193 535.4511548101674 -2.7287198595489337 0.11606115873798828 KLFIGGLSFETTEESLR ddPTM_BT-474_Trastuzumab_2h_R1 4 KLFIGGLSFETTEESLR 17 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;; 262.59 3.8052e-27 11955510000.0 1948021.0 2384800.0 2282890.0 2351820.0 2399310.0 2591450.0 2692780.0 2409967.0 3184230.0 2745960.0 False True 1937533.0713814772 2464176.6263579554 2604301.068764409 2649560.1708624605 2704847.906675461 2412309.1611171337 2562519.9439814542 2589810.975104466 2399519.182995978 2570710.4818653665 0.753695558114953 0.9585585944979275 1.013066654971846 1.030672333408731 1.0521791254815913 0.9383822791926016 0.9968139010823308 1.007430044485305 0.9334070094329844 1.0 21.29373570967991 4.733831520847445 3.1101385384217517 0.9981386108328772 0.7175754798458416 0.8124711710125723 0.034789947921513006 0.13969907209850452 2.0792678497950305 0.008530650319126873 0.09555021088657474 54179.0668664143 -4.733831520847445 -0.28056313098703567 KLFVGGIKEDTEEHHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLFVGGIKEDTEEHHLR 17 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 143.14 1.8023e-07 262050000.0 168230.0 328780.0 295040.0 443130.0 343910.0 341630.0 505280.0 254980.0 671890.0 418410.0 False True 167324.26837211027 339723.24354829284 336579.0674663472 499230.2125648572 387704.8999857283 318013.9222105179 480837.6760429546 274007.9023622051 506311.7123647372 391706.7155811769 0.4271672190349112 0.8672898115730389 0.8592629487267365 1.274500009079873 0.9897836431282239 0.8118674241739239 1.2275451426190989 0.6995231163082267 1.2925785855203435 1.0 18.579414337095162 4.870858644815278 1.5710630775724352 1.0074667751188313 0.0672035601786401 0.4783772794305057 0.18747059532179997 1.2895635274002477 2.3455167971462285 0.047364190615581156 2.046041763836659 74277.73376411642 -4.870858644815278 -0.9402632149401913 KLFVGGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLFVGGLK 8 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ; 131.06 0.0030715 0.0 10826100.0 12425100.0 11563600.0 10061800.0 9418700.0 12314500.0 12487400.0 10696600.0 18895700.0 12439500.0 False True 10767813.480492787 12838661.94236843 13191654.367386974 11335622.848340403 10618115.615991328 11463227.600214917 11883336.755499503 11494834.608234234 14239107.924407812 11645600.460008254 0.9246250133232852 1.102447399467054 1.1327586252583515 0.9733824277475143 0.9117705568256977 0.9843397632934757 1.0204142582692624 0.9870538361425193 1.2227027685953875 1.0 23.473281692626145 -0.9168914717329885 4.8585877639253034 0.9999998661884646 1.0244844082540423 0.006722205700506856 0.09241698019727897 1.3223539165970704e-07 2.937262627692021e-08 0.08786255826227005 0.02070929033252467 0.12109006944635932 0.9168914717329885 0.024484542065577708 KLFVQDLATR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLFVQDLATR 10 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 139.76 6.492600000000001e-05 354720000.0 643330.0 795260.0 783940.0 718380.0 548070.0 663730.0 786080.0 600830.0 1046400.0 774360.0 False True 639866.3827606817 821729.748355178 894311.9378713687 809326.8343428395 617863.4658346032 617847.9073523608 748054.3072827847 645666.9855529211 788528.7410416296 724939.681837049 0.8826477551059345 1.1335146481054206 1.233636342826645 1.1164057570858137 0.8522963790158279 0.852274917254757 1.0318848947365684 0.8906492522477937 1.0877163449563712 1.0 19.467501435999257 3.257611335830439 24.99338618628571 0.9441450338631595 1.1046975280197844 0.27736440832254594 0.10865897378362777 283.9875890130985 372572.1655932688 0.030136898069946644 0.04074134922813432 1809.7197909610545 -3.257611335830439 0.16055249415662487 KLGAGEGGEASVS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KLGAGEGGEASVSPEK 16 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 KLGAGEGGEAS(0.001)VS(0.999)PEK;KLGAGEGGEAS(0.031)VS(0.969)PEK;KLGAGEGGEAS(0.001)VS(0.999)PEK;KLGAGEGGEAS(0.003)VS(0.997)PEK 176.88 1.861e-09 3581800000.0 3635331.0 2832362.0 2570520.0 2337062.0 2493934.0 3549987.0 3438689.0 3288528.0 4961250.0 3387733.0 True False 3615758.781819241 2926635.456971016 2932426.8726396263 2632933.8095756336 2811521.7121950714 3304584.754460527 3272346.476002362 3533934.6581668253 3738616.414844024 3171524.9795558555 1.1400694634685162 0.9227849302264886 0.9246109967736363 0.8301791177896864 0.8864889068566632 1.0419545095064349 1.031789595571978 1.1142698484000975 1.1788071791783852 1.0 21.596745274490207 2.3702344288272834 2.0569267722488433 1.099231980760887 0.9346711404119927 0.3588093640562131 0.08782153171227872 0.3276376154983724 2.8378882739937663 0.03884383854190141 0.029037858902313123 234.54945536251296 -2.3702344288272834 -0.1645608403488943 KLGAGEGGEASVS(ph)PEKTSTTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGAGEGGEASVSPEKTSTTSK 22 2 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 KLGAGEGGEAS(0.426)VS(0.573)PEKTSTTSK 99.614 0.00051184 182620000.0 149750.0 126080.0 118720.0 120320.0 90495.0 184250.0 189220.0 146830.0 285740.0 196190.0 True False 148943.76263878928 130276.49658303059 135434.7440672612 135552.4996633126 102019.00184411174 171513.23117784702 180066.70570940466 157787.20018763267 215323.20571983507 183668.9862332904 0.8109358345867154 0.7093004608712633 0.7373849382237913 0.7380260676733861 0.5554503454085085 0.9338170515080672 0.9803871050972632 0.8590846142484637 1.1723438460445277 1.0 17.486748512509187 2.5903355624535207 6.644576798322787 0.9742817580374935 0.7138126370226575 0.6863100737100079 0.09435570911520988 0.15281253575476267 7.955613053037264 0.030308779435147787 0.028483557186935193 389.34586120612335 -2.5903355624535207 -0.260469121014836 KLGCEVLGVSVDSQFTHLAWINTPR ddPTM_BT-474_Trastuzumab_2h_R1 7 KLGCEVLGVSVDSQFTHLAWINTPR 25 1 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 ;;;;;; 308.35 1.3078999999999994e-74 6427726000.0 3544463.0 4657071.0 4776126.0 4463997.0 4861746.0 4734787.0 5280525.0 4668127.0 5372042.0 5060909.0 False True 3525380.005034861 4812078.7929761335 5448563.025968609 5029138.562496077 5480860.535273802 4407482.319179731 5025085.832185565 5016486.341008597 4048174.2307748054 4737917.454757816 0.7440779706904085 1.0156527290579629 1.1499911254251935 1.0614660577182105 1.1568079409593601 0.9302573042410729 1.0606106755066773 1.0587956394155922 0.8544205907829039 1.0 22.175821633109383 4.73059539439168 4.777397108450229 1.0423907001102264 0.7289731136893661 0.4960720016974437 0.08685225390219199 0.13222391412803589 8.598389950445368 0.02018655833042572 0.1365358983384294 53776.854300263636 -4.73059539439168 -0.31341758642086026 KLGDVS(ph)PTQIDVSQFGSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 KLGDVS(0.942)PT(0.058)QIDVSQFGSFK 244.67 9.637e-25 478220000.0 503220.0 490150.0 417480.0 455970.0 448660.0 493450.0 493990.0 616680.0 772450.0 531200.0 True False 500510.71943299775 506464.34644806763 476257.55519878917 513695.75524834305 505794.1915838355 459338.9629563562 470093.8164749434 662699.7930375895 582090.0477997003 497298.36121679994 1.0064596195497966 1.0184315613042443 0.9576897740693782 1.0329729500644675 1.0170839701668186 0.9236687646274081 0.9452953259783686 1.3325999937262651 1.170504657154772 1.0 18.923752151368173 1.7550013639569633 24.99999999999981 1.1980877891791346 0.9867171773639799 0.49085292559263005 0.08311673788785984 3.991234960351276 6076.124965911202 0.036195662299434675 0.020072639420485972 56.88547174015041 -1.7550013639569633 -0.2113706118151547 KLGDVSPT(ph)QIDVSQFGSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 KLGDVS(0.279)PT(0.721)QIDVSQFGSFK 185.5 1.3238999999999999e-14 587020000.0 512040.0 485980.0 449720.0 479380.0 460320.0 523970.0 495380.0 534430.0 728390.0 521410.0 True False 509283.2335329917 502155.55051888595 513036.66696368525 540069.4588480609 518939.0234696014 487749.18719270825 471416.576864627 574311.8803805525 548888.0444259493 488133.16739844054 1.0433284758076833 1.0287265526232918 1.0510178394514158 1.1063977924844168 1.0631095326616384 0.9992133699748805 0.9657540367049704 1.1765475463210395 1.1244637346634498 1.0 18.896915256931685 1.7330151127609827 24.999999843844556 1.115080891868145 1.039272688321789 0.20901374317743915 0.054276274703316515 0.7410015155973184 3313.953575062229 0.025079075913399886 0.013907617164362283 54.07731406680403 -1.7330151127609827 -0.07580820354635587 KLGEMWNNLNDSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGEMWNNLNDSEK 14 1 O15347;E7ES08;E7EQU1;E9PES6 O15347 HMGB3 High mobility group protein B3 0 181.58 1.6555999999999998e-07 0.0 684360.0 619200.0 557590.0 519840.0 482330.0 735820.0 749300.0 666900.0 989990.0 685140.0 False True 680675.4817995444 639809.6976856958 636093.8253408378 585651.6906996034 543751.8665061096 684954.4953339671 713053.4963960305 716667.4644495817 746020.2296863557 641413.7786221347 1.0612111939062963 0.9974991479916682 0.9917058949174353 0.9130637822556327 0.8477396099506633 1.067882415630929 1.1116903318288391 1.1173247104062913 1.1630873151632841 1.0 19.290895820009812 2.5042610509496086 16.02025208415054 1.1065666265847032 0.9625751806232427 0.502334279824015 0.06490682192323041 6.873552524679515 4057.209598484504 0.02172840022951361 0.020302210445151844 319.34568397386073 -2.5042610509496086 -0.14399144596146052 KLGEMWNNTAADDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGEMWNNTAADDK 14 1 P09429;Q5T7C4;B2RPK0 P09429 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 0 169.09 5.4313e-06 687020000.0 437430.0 333540.0 316970.0 290670.0 273630.0 444430.0 411530.0 377840.0 594910.0 405710.0 False True 435074.92548304197 344641.6772708125 361596.6208473707 327468.79219693353 308475.15856792405 413707.60017568816 391622.7217027331 406036.3394326439 448302.40188558534 379817.2404541935 1.145484931023063 0.9073881871678144 0.9520279290507345 0.8621746390588785 0.8121673418485241 1.0892280710611446 1.0310820046884188 1.0690308290036994 1.180310828833088 1.0 18.53494586742621 2.7065574513693567 24.916101369679957 1.0737864271855566 0.9310733070519934 0.35946306424260255 0.09205145489166437 696.6639335722622 542387.8222601091 0.02982673234655603 0.02812314088728109 508.8121242527116 -2.7065574513693567 -0.1427131201335632 KLGEMWNNTAADDKQPYEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KLGEMWNNTAADDKQPYEK 19 2 P09429;Q5T7C4 P09429 HMGB1 High mobility group protein B1 0 ;;; 284.88 3.3356999999999997e-40 12362660000.0 5351170.0 4364690.0 4107260.0 3573320.0 3590920.0 5509200.0 5844810.0 5162230.0 8052420.0 5241740.0 False True 5322359.895290875 4509966.068139181 4685526.507056097 4025701.9456192465 4048202.376949642 5128361.971261852 5562074.210957539 5547461.815872796 6068008.987899885 4907207.665520607 1.0846005015616604 0.919049360765277 0.9548253969315171 0.820365107819858 0.8249502880005318 1.0450672400304428 1.1334499352937935 1.1304721939629316 1.2365502749222104 1.0 22.226470894669053 2.494477219876983 4.187233011545012 1.1328148651828254 0.9171155597681923 0.5499290056331841 0.08727829809895786 0.15364137357344548 6.309933848026085 0.03048423033497007 0.026965619168209054 312.23186264129873 -2.494477219876983 -0.2156993054146331 KLGEMWSEQSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLGEMWSEQSAK 12 1 P26583 P26583 HMGB2 High mobility group protein B2 0 ; 232.37 1.9627e-12 7328800000.0 7647900.0 7961300.0 7912000.0 7606600.0 6638600.0 9116000.0 9341600.0 8221600.0 13028000.0 9917400.0 False True 7606724.556161569 8226287.057792526 9025940.827663166 8569594.780077733 7483986.359935034 8485832.3767558 8889711.119622525 8835137.540438876 9817423.966256067 9284463.041286698 0.8192961210934373 0.886027228630389 0.9721553941812339 0.9230038120643007 0.8060763801476513 0.9139820298729717 0.9574825253858229 0.9516045786547122 1.0574035270105948 1.0 23.14638704490506 1.7551596616083254 1.360023972165089 1.0223367074465863 0.8888059117441395 0.5426130232919999 0.049682108124912715 0.34520630035991684 1.211541815970749 0.04132692624851748 0.01622622775424376 56.906209921848316 -1.7551596616083254 -0.13353079570244686 KLGEWVGLCK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGEWVGLCK 10 1 P25398 P25398 RPS12 40S ribosomal protein S12 0 105.2 0.0041372 563040000.0 1734100.0 1932200.0 1825200.0 1664600.0 1597400.0 2072900.0 2022200.0 1714700.0 2834400.0 2173600.0 False True 1724763.7982766237 1996512.108960433 2082172.2950772035 1875338.1893247156 1800819.421468414 1929605.3020817353 1924378.4604458185 1842659.621070174 2135900.09901414 2034878.987087416 0.8476001812497609 0.9811453760295109 1.0232413368509348 0.9215969112782201 0.8849761744534899 0.9482653830160377 0.9456967577223055 0.9055376918052649 1.0496447762091832 1.0 20.956511570243222 1.2368880399950666 24.99999250802883 1.0248224117576612 0.934695507136914 0.3765985061491032 0.04755501551707383 48.24051912216954 720941.7759698189 0.038474854753493985 0.01156157657351596 17.25393032746855 -1.2368880399950666 -0.09012690462074724 KLGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 KLGPGRPLPTFPTSECT(0.096)S(0.904)DVEPDTR;KLGPGRPLPTFPTSECT(0.019)S(0.981)DVEPDTR 143.47 1.6932e-07 337850000.0 203886.0 224012.0 247594.0 218946.0 205616.0 243569.0 217661.0 202688.0 311660.0 269230.0 True False 202788.30042986406 231468.1040018863 282453.08307437267 246664.54115096075 231799.9788184862 226731.64832975308 207131.90588423389 217813.60778880963 234855.5690300405 252047.51090060043 0.8045637892049541 0.9183510806149956 1.1206342886114167 0.9786430354721394 0.9196677959255896 0.8995591645385019 0.821797069703736 0.8641767856009831 0.9317908682806239 1.0 17.94333618149549 2.9865474666786116 3.229988467874339 0.8864332682991823 0.9640286946376936 0.05548687205965219 0.08494089757768199 0.5093925669122681 10.988402571209518 0.02760231663183594 0.03157027932548686 969.4992259617818 -2.9865474666786116 0.07759542633851124 KLGQSESQGPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLGQSESQGPPR 12 1 F5H169;F5H5V4;F5GX23;J3KN29;O00233-2;O00233 F5H169 PSMD9 26S proteasome non-ATPase regulatory subunit 9 0 ; 188.48 1.4671e-05 313480000.0 226600.0 241590.0 221630.0 233350.0 229480.0 269710.0 252260.0 242060.0 299830.0 263390.0 False True 225380.01077762674 249631.1771057612 252833.57755750595 262892.0860740857 258702.91776547625 251065.58252904858 240057.2200732184 260123.74635577446 225940.91401616222 246580.2247004757 0.914023057004668 1.012373061988209 1.0253603177814696 1.0661523501871417 1.0491632817665169 1.0181902576900532 0.9735461161365195 1.0549254169581128 0.9162977862098053 1.0 17.911697577216728 4.737804361315842 4.91227058675561 1.0181265840219977 0.9086683562270844 0.3308175153358561 0.04166750040821956 0.18365708270064585 13.415645236368821 0.009614246661941854 0.06860312100379311 54676.9601526429 -4.737804361315842 -0.10945822779491332 KLGVNNISGIEEVNMFTNQGTVIHFNNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGVNNISGIEEVNMFTNQGTVIHFNNPK 29 1 P20290-2;P20290 P20290-2;P20290 BTF3 Transcription factor BTF3 0 128.49 1.1224e-05 176390000.0 77611.0 69646.0 58762.0 50940.0 43590.0 55659.0 60380.0 48054.0 85106.0 67417.0 False True 77193.15099939275 71964.1250081039 67035.17883153993 57388.9987770041 49140.928121828074 51811.4243371929 57459.188726000626 51640.03349326768 64132.76666197334 63114.38934140248 1.2230673829676861 1.1402174014364752 1.0621219587331958 0.9092854953657521 0.7786010232311962 0.8209130259809876 0.9103976022835083 0.8181974670456373 1.0161354222261771 1.0 15.945681339826205 3.9637704578679527 1.921170641689082 0.8734359561187433 1.1954523911212753 0.7145567156981472 0.0743442130690542 0.1680544795094687 1.201122380528086 0.020239455599546874 0.05540903912072434 9199.632056116105 -3.9637704578679527 0.3220164350025321 KLGVS(ph)VSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGVSVSPSR 10 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 KLGVS(0.852)VS(0.14)PS(0.008)R 74.53699999999998 0.025538 239410000.0 101930.0 147080.0 129890.0 144990.0 152170.0 155800.0 140780.0 125730.0 169850.0 164560.0 True False 101381.22020548761 151975.46888826234 148177.38297588078 163345.71913384047 171547.94751774677 145029.91271375085 133969.93356817443 135112.61104400357 127992.74337339545 154057.63991309598 0.6580733046584176 0.9864844675927258 0.9618307995596178 1.0602896372161998 1.113530933061918 0.9414003277965463 0.8696091517677862 0.8770263592264602 0.830810750090656 1.0 17.23311070365882 -3.1666717525955055 9.667515164228629 0.9994223926373722 0.9330969205932693 0.0 0.12256847442885434 0.0 0.0 0.0 0.02758073246219671 0.0006812840906404654 3.1666717525955055 -0.06632547204410288 KLGVSVS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLGVSVSPSR 10 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 KLGVS(0.205)VS(0.506)PS(0.289)R;KLGVS(0.077)VS(0.462)PS(0.462)R 107.99 0.0013537 833120000.0 960920.0 1133330.0 947760.0 1013290.0 997460.0 1213030.0 1047500.0 1006050.0 1390810.0 1212670.0 True False 955746.5134882495 1171052.203937548 1081196.3699224025 1141572.410105036 1124480.6185913894 1129176.0912654751 996828.4231614054 1081126.5596183876 1048063.5113991881 1135276.36238098 0.8418624267696297 1.0315128921397927 0.9523640284862822 1.0055458282517673 0.9904906469056142 0.9946266201625911 0.8780491307603621 0.9523025365832283 0.9231791888990949 1.0 20.11461210746032 0.03234709067572886 8.05545706975094 0.9999999957244131 0.9550602770197455 0.060117009432130386 0.055668975673576725 3516847.635504079 218289.72390849382 0.05112482612615087 0.012399591658908929 1.0773258747660106 -0.03234709067572886 -0.04493971870466762 KLGVSVSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 KLGVSVSPSR 10 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 KLGVS(0.007)VS(0.487)PS(0.506)R 74.649 0.025334 492310000.0 475100.0 593660.0 538410.0 551960.0 566220.0 612300.0 590750.0 506490.0 757220.0 617760.0 True False 472542.11438857205 613419.6142249524 614213.4480563862 621838.0794062655 638324.7607511246 569973.1421991632 562173.1656158472 544286.8557041074 570613.2772281568 578334.0279090547 0.8170747208097553 1.0606666469942092 1.0620392686853517 1.0752230534566645 1.103730249210762 0.9855431544636585 0.9720561794511099 0.9411288795714762 0.9866500148559268 1.0 19.141543464075742 2.496112626349504 23.007093336520384 0.9684971465027844 1.0321702162253164 0.08080590943935351 0.07551709030907809 551.5584894143115 668186.7233819735 0.02474277424043238 0.02293129150364164 313.40983901669955 -2.496112626349504 0.06367306972253195 KLHAVVETLVNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLHAVVETLVNHR 13 1 Q13596-2;Q13596;H0YK42;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 0 135.58 3.3462e-05 286030000.0 110290.0 129440.0 145720.0 116520.0 132130.0 141930.0 157080.0 110310.0 160870.0 146690.0 False True 109696.21089437098 133748.33215186774 166236.10937905422 131271.4200529351 148955.97230413274 132118.71316728287 149481.4402961277 118541.8923428302 121225.74404756015 137328.1186123727 0.7987891482297479 0.9739326039220753 1.210503071466946 0.9558961513444058 1.0846720526666591 0.9620659956771557 1.0884984212014104 0.8632018958726931 0.8827452474590168 1.0 17.0672675291224 1.7134647911313554 10.674212417009166 0.9059576193008847 1.015728923072301 0.13965669134836245 0.10700839984822706 0.18621117596034698 52.00964666085317 0.0498764989189388 0.02708925197222552 51.69693448328427 -1.7134647911313554 0.1097713037714163 KLHELTVMQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLHELTVMQDR 11 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 195.25 1.0215e-07 1210938000.0 1085308.0 1189401.0 1122953.0 1099953.0 977403.0 1184614.0 1294957.0 971880.0 1494678.0 1210013.0 False True 1079464.8223170543 1228989.4932769113 1281055.0215175487 1239206.9370192778 1101869.4785285406 1102724.4224614075 1232314.9826938673 1044406.620706643 1126334.6345590807 1132788.934395752 0.9529267011182965 1.0849236393119204 1.1308858893478548 1.0939433634918856 0.9727050159757217 0.9734597408030108 1.087859304832638 0.9219781276056925 0.9943022926507363 1.0 20.111447647016668 3.2361142356254864 24.999227230183344 0.989141242702916 1.0717034555535754 0.2804726908766785 0.057616507537493374 78.27261387790844 799858.1240916952 0.016623804411231055 0.020765247242543708 1722.32155013002 -3.2361142356254864 0.08256221285065934 KLIELQAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLIELQAGK 9 1 K7ELL7;P14314-2;P14314;K7EPW7 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 102.52 0.0070149 0.0 435060.0 486040.0 465800.0 361000.0 323370.0 428890.0 464220.0 395770.0 675120.0 437320.0 False True 432717.6852997096 502217.547582615 531380.5911938205 406702.5629858364 364549.25273584644 399241.84379846376 441763.9051073866 425304.3670793392 508745.7221445199 409409.8631915111 1.0569302896772073 1.226686488858943 1.2979183917346289 0.9933873107389983 0.8904261609479593 0.9751642050980804 1.079026044130112 1.038822962798024 1.2426318168757506 1.0 18.64318633353012 3.7242507068725335 24.972008458692294 1.028444700887704 1.197129203845038 0.34922817026826214 0.1015658372143825 835.1211241084077 1457357.4510304641 0.027960878975543904 0.04353306751328122 5299.69293048399 -3.7242507068725335 0.16868450295733406 KLISEVDS(ph)DGDGEISFQEFLTAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLISEVDSDGDGEISFQEFLTAAK 24 1 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 1 KLIS(0.05)EVDS(0.95)DGDGEISFQEFLTAAK;KLIS(0.034)EVDS(0.966)DGDGEISFQEFLTAAK 230.32 1.2717e-33 398280000.0 350030.0 256390.0 256770.0 224490.0 217690.0 334740.0 300500.0 362240.0 530210.0 354220.0 True False 348145.4773719887 264923.78615897195 292920.9841151506 252910.410982522 245411.53115028146 311600.21169320267 285963.6669785227 389272.1882174493 399546.8499500029 331613.37633700046 1.0498535409445835 0.7988935461087808 0.883320773579022 0.7626664936624964 0.7400531723451444 0.9396491032271885 0.8623405670099192 1.173873600990852 1.2048574588980554 1.0 18.33914267664393 1.7564956505385039 6.219675472050736 1.1403866714742374 0.8545329264541396 0.6008611154374921 0.09809213900272631 0.09835487675685126 10.120201713584652 0.04698580581153476 0.025115281924755695 57.08153594244459 -1.7564956505385039 -0.28585374502009786 KLKPEYDIMCK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLKPEYDIMCK 11 2 J3KQ32;Q9NTK5;Q9NTK5-3;Q9NTK5-2;C9JCJ9 J3KQ32 OLA1 Obg-like ATPase 1 0 114.72 0.00068587 328440000.0 1233800.0 1331700.0 1306800.0 1266200.0 1158800.0 1543700.0 1483600.0 1436700.0 2012500.0 1642700.0 False True 1227157.3578880676 1376024.8294703495 1490786.0810907762 1426500.7901735897 1306366.3112542864 1436987.6524789294 1411832.600097624 1543913.849414777 1516546.3411183886 1537861.4796137742 0.7979635189225636 0.8947651317828254 0.969389051519243 0.9275873081441951 0.8494694278852563 0.9344064283603887 0.9180492643929141 1.003935575395596 0.9861397539518716 1.0 20.552494130052878 1.8996885499110496 1.9133085845377211 1.0000881499170524 0.896939871772132 0.50355933039036 0.04476448773813239 0.29789199367686153 2.0299654101927773 0.029234024420833043 0.01374467367133162 79.37587941191086 -1.8996885499110496 -0.10314827814492045 KLLEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLLEDR 6 1 P35579;Q9Y6N9-5;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;A0A0C4DFM8 P35579;Q7Z406 MYH9;MYH14 Myosin-9;Myosin-14 0 ; 104.45 0.054232 3092300000.0 6820700.0 7317600.0 6533200.0 6348000.0 5710100.0 7039100.0 7664000.0 6660500.0 8992900.0 7592900.0 False True 6783978.109051009 7561161.89241738 7453017.772407621 7151656.149124889 6437247.3885857 6552503.585259071 7293263.040676869 7157540.331333697 6776720.293686235 7108314.621391264 0.9543722345428803 1.0637067005536516 1.0484929507733143 1.0060973001396416 0.9055940446437049 0.9218083236693584 1.026018603443499 1.0069250887959147 0.9533512027299479 1.0 22.761076107285543 3.4682570196361326 24.981866933780022 0.9721221686182003 1.0265010608033525 0.2341249384233567 0.043901635831985523 290.82700948356523 819627.0422539233 0.012959250717088654 0.017571956557470764 2939.388695716993 -3.4682570196361326 0.05437889218515213 KLLEGEEER ddPTM_BT-474_Trastuzumab_2h_R1 9 KLLEGEEER 9 1 P20700;E9PBF6;P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8;Q03252 P20700;P02545;P02545-2;Q03252 LMNB1;LMNA;LMNB2 Lamin-B1;Prelamin-A/C;Lamin-A/C;Lamin-B2 0 ;;;;;;;; 187.42 6.5027e-05 20861250000.0 21713010.0 23977690.0 21741860.0 20919280.0 21290930.0 25549000.0 24883310.0 22529690.0 29088000.0 24258390.0 False True 21596109.566702217 24775772.916830335 24802924.904365122 23567658.70309787 24002203.734271027 23782857.76587688 23679609.231824756 24210969.871247727 21919652.159230612 22710198.781547435 0.9509432204639952 1.0909535911663277 1.0921491768058884 1.0377566013313428 1.0568909574571128 1.0472324788808545 1.0426861279199806 1.0660835734700704 0.9651897973275707 1.0 24.436836998169046 1.2398964521647244 24.999997317276833 0.9825948817439274 1.0513195197671488 0.31943086428963163 0.03800448944275655 35.84800109459973 671004.6881916928 0.02718795958463581 0.008695443778437345 17.373865382825112 -1.2398964521647244 0.06872463802322137 KLLEPVDHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLLEPVDHGK 10 1 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 104.79 0.0017102 437990000.0 805690.0 749540.0 770790.0 665440.0 635420.0 845300.0 870720.0 773220.0 1067500.0 838130.0 False True 801352.2545605744 774487.9857935021 879310.532173218 749684.635770899 716336.9705705898 786866.4006221663 828599.947126587 830921.6027316031 804428.9287671451 784639.8258408067 1.0212994907591633 0.9870617833648374 1.1206549848919072 0.9554506552959502 0.9129500529787349 1.0028377029919093 1.0560258603221846 1.0589847409812543 1.0252206200534528 1.0 19.5816710383566 2.285908491794434 8.359674547535219 1.0425507091536648 0.9988346914786497 0.09030700795639324 0.052266378232202065 0.5725667568892224 91.07092195662996 0.019202172961490495 0.015971435830834376 193.15612836854694 -2.285908491794434 -0.043716017675015095 KLLVLDVDYTLFDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLLVLDVDYTLFDHR 15 1 Q8WVY7 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 0 167.71 8.409200000000002e-07 103200000.0 193620.0 258910.0 218780.0 224260.0 228340.0 231140.0 218190.0 199170.0 286390.0 219220.0 False True 192577.5714332045 267527.66283559974 249582.32233015003 252651.2930061042 257417.74552278596 215161.83584503454 207635.31613325723 214033.07676476735 215813.02192938872 205229.19191631532 0.9383536992716431 1.3035556020933288 1.2161151150072267 1.231068985103863 1.254294007198309 1.0483978123968318 1.0117240836670207 1.0428978195852465 1.0515707824712826 1.0 17.6468764297362 2.6690033229379457 6.555520854723804 1.031579236670776 1.1987366365014056 0.42004673080931754 0.09237480674953412 0.22389106245739038 17.42714005173137 0.02875298428559605 0.02713116803020659 466.66295090097486 -2.6690033229379457 0.16715739983062972 KLLYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLLYEK 6 1 H7C4X7;P05408-2;P05408 REV__J3KTF2 SCG5 Neuroendocrine protein 7B2;N-terminal peptide;C-terminal peptide 0 91.906 0.07593899999999999 974220000.0 870720.0 1075300.0 799020.0 776150.0 807690.0 903070.0 880420.0 888410.0 1213900.0 1017300.0 False True 866032.1402660871 1111090.7104674238 911515.0707936595 874410.5104195476 910544.5339463038 840642.8964981197 837830.7210689875 954707.6654545703 914750.6104266398 952375.0430456514 0.9093393895503145 1.1666524848385433 0.9570967629293146 0.9181367327972215 0.9560776929164633 0.8826805181809285 0.8797277156587845 1.0024492687265925 0.9604941006237517 1.0 19.861170289767834 4.028918465902888 24.999661243256906 0.940657265794603 1.043965700794724 0.22364655525203325 0.06980564427545786 250.02652327319973 216141.67456178396 0.016290298794828913 0.03519024581727647 10688.541945573097 -4.028918465902888 0.1033084350001211 KLMEECKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLMEECKR 8 2 Q9P0L0-2;Q9P0L0 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 69.423 0.030347 498980000.0 168140.0 161280.0 194720.0 125650.0 172160.0 188930.0 187730.0 171070.0 270970.0 211880.0 False True 167234.75292211014 166648.10730418126 222134.88346341922 141557.27711681527 194083.55552773378 175869.71379338202 178648.7827017572 183836.11207585846 204193.074311975 198357.63700040587 0.8430971222034065 0.8401396075505794 1.1198705874025143 0.7136467204261242 0.9784526497829608 0.8866294056176025 0.9006398009338641 0.9267911982409949 1.0294187680384457 1.0 17.597744418431272 1.357172959811855 3.6098215752249208 1.0149380871717795 0.9002786181540557 0.17893596347356644 0.09842867424075047 0.38961675574754917 8.16593759832135 0.07244880288092666 0.023626494956988143 22.760036794283963 -1.357172959811855 -0.11465946901772373 KLNCQVIGASVDSHFCHLAWVNTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLNCQVIGASVDSHFCHLAWVNTPK 25 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ; 213.05 2.2144e-26 3414300000.0 2682550.0 2784270.0 2926700.0 2882240.0 2690990.0 3526710.0 3655980.0 1346280.0 4158100.0 3127060.0 False True 2668107.448859325 2876942.7438232424 3338753.920667568 3247131.288477277 3033671.6257526567 3282916.8386823656 3479126.2802001336 1446746.2498713192 3133391.970685401 2927488.3535892437 0.9113981429125397 0.9827341380524948 1.1404841001584491 1.1091867485983797 1.0362711168545649 1.1214107255652612 1.1884338586469712 0.4941936824778611 1.070334564044878 1.0 21.481232000596364 1.7697290690554757 24.99999999992066 0.802923611786209 1.0715325928353783 0.25322709935748955 0.1620985708143612 27.461565700117877 22038.19998871735 0.07152614524426 0.03967489698012971 58.847642477327284 -1.7697290690554757 0.2686089810491693 KLNELESDLTFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLNELESDLTFK 12 1 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 84.365 0.019686 415050000.0 294280.0 267230.0 226420.0 226530.0 249220.0 285590.0 278890.0 264920.0 435840.0 268200.0 False True 292695.62917758164 276124.58900605375 258297.9679220795 255208.6747733561 280956.68975732924 265847.83550654736 265399.0252367391 284689.6756365024 328433.07195678906 251083.2463824276 1.1657314193388026 1.09973322786135 1.02873438050368 1.0164305203567625 1.1189782424965187 1.0588035615153377 1.0570160656299106 1.1338457652522482 1.3080644634351632 1.0 17.93780624192572 1.5592491490732976 5.308438628230378 1.1740044434792825 1.0759669125590783 0.12474601334136926 0.08086346472707043 0.2151914931126663 12.861809759790845 0.04321773406884948 0.01955988119735924 36.24508721162727 -1.5592491490732976 -0.09803753092020417 KLNEQSPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLNEQSPTR 9 1 O75396 O75396 SEC22B Vesicle-trafficking protein SEC22b 0 ; 180.07 7.869e-05 445110000.0 453260.0 572210.0 606630.0 472820.0 458400.0 557320.0 604120.0 478920.0 769620.0 561350.0 False True 450819.6985219202 591255.6639417502 692038.2310775165 532678.9635206736 516774.5228503331 518793.78019016393 574896.4076374883 514659.44230648334 579957.4633796437 525524.1624040857 0.8578477085802881 1.125077981642112 1.3168533068235877 1.0136145997243156 0.983350642692191 0.987193010910987 1.0939485731874672 0.9793259361322224 1.1035790642366377 1.0 19.00339757198139 KLNKEELPVIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLNKEELPVIPK 12 2 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 73.46600000000002 0.022004 209110000.0 471570.0 572060.0 563730.0 525000.0 603420.0 647710.0 616570.0 676900.0 986580.0 650400.0 False True 469031.11951635184 591100.671282427 643098.2839710002 591464.9461705373 680261.9602494497 602935.3322453372 586744.1535738687 727413.7152285537 743450.578494697 608890.9151645459 0.770304019710331 0.9707825434095839 1.0561797983095382 0.9713808030962336 1.117214829959512 0.9902189657114538 0.9636277023698205 1.1946535859086984 1.2209914123842494 1.0 19.215824262096277 5.637125763127903 0.6850238969724396 1.0869963280452901 9.39521279592336e-34 0.5252947813297154 0.08521029027026458 7.701030404244544 1.0996217334437466 0.03454423589362152 8.625449901016005 433636.43277744995 -5.637125763127903 -1.0869963280452901 KLNS(ph)GGGLSEELGSAR ddPTM_BT-474_Trastuzumab_2h_R1 6 KLNSGGGLSEELGSAR 16 1 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 KLNS(1)GGGLSEELGSAR;KLNS(0.997)GGGLS(0.003)EELGSAR;KLNS(0.999)GGGLS(0.001)EELGSAR;KLNS(1)GGGLSEELGSAR;KLNS(0.999)GGGLS(0.001)EELGSAR;KLNS(0.999)GGGLS(0.001)EELGSAR 254.7 8.4246e-27 4124520000.0 1310122.0 1281182.0 1223049.0 1215470.0 1174307.0 1427830.0 1383955.0 1332946.0 1877260.0 1592733.0 True False 1303068.4487202384 1323825.368379126 1395243.6682675187 1369348.3773750549 1323848.0357870967 1329127.4728502887 1317007.8094284902 1432417.1990826419 1414634.4269952322 1491083.4163326728 0.8739071432536899 0.8878278397295044 0.9357247575719992 0.9183579955191066 0.8878430417012535 0.891383713541181 0.8832556213841326 0.9606553083432979 0.9487292337235785 1.0 20.507929538523783 1.657340523791059 4.917142568237627 0.9681413863867282 0.8983766017345337 0.7203383194036079 0.020803770901609467 0.08969060552774584 4.8592901772513475 0.011816509068129671 0.005644287502524697 45.42976850407111 -1.657340523791059 -0.06976478465219449 KLNTLVQISVIHPVEQSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLNTLVQISVIHPVEQSLTR 20 1 O15327;D6RJC3;E7EQN9;E9PG59;D6RE59;O15327-2 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 67.251 0.014629 136270000.0 119030.0 141070.0 137510.0 167340.0 150100.0 154450.0 152790.0 138700.0 171110.0 166590.0 False True 118389.15570547625 145765.4296713841 156870.21274165346 188525.22684224337 169214.34528759794 143773.23503619264 145398.963985519 149050.49830432917 128942.2332565303 155958.08357512532 0.7591088130321116 0.9346449143892475 1.0058485533139343 1.208819847747298 1.0849988753938942 0.9218710036721937 0.9322951440056649 0.9557087063879651 0.8267749276004572 1.0 17.25079880644677 -0.5338854711339139 7.62964303315054 0.9999999999992673 0.9676141675867541 0.0058858144830195025 0.11886966583317168 0.0 0.0 0.12032855215038742 0.02836171152065481 0.2924923614947578 0.5338854711339139 -0.03238583241251314 KLNVTEQEK ddPTM_BT-474_Trastuzumab_2h_R1 5 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 ;;;; 197.21 4.5507e-05 4781260000.0 9078550.0 6962340.0 6236720.0 5700390.0 5998070.0 8510160.0 7868270.0 7269760.0 11298640.0 8612750.0 False True 9029672.095521737 7194077.278076591 7114795.965457969 6422058.789525843 6761888.661153783 7921872.66996184 7487651.720389692 7812266.4062933 8514241.56601931 8063076.921253743 1.1198791954619847 0.892224810495541 0.882392172980991 0.7964774306688948 0.838623856276242 0.9824875475366361 0.9286345390867763 0.9688939449034248 1.0559544016721862 1.0 22.94289905472006 1.6796509909899198 1.4046951258680462 1.0263630038420422 0.9058328992511819 0.19802756562438173 0.08411218483107367 0.6235885378561596 2.3723554294019635 0.07108575798387501 0.026530647565123595 47.82456087094104 -1.6796509909899198 -0.12053010459086022 KLNVTEQEKIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLNVTEQEKIDK 12 2 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 ; 176.89 1.3483e-05 1706770000.0 2038310.0 1908060.0 1809700.0 1750850.0 1680750.0 2076300.0 2152100.0 1847040.0 2761900.0 2289700.0 False True 2027335.9654375324 1971568.623653374 2064490.0298056176 1972507.4304813065 1894783.5499142597 1932770.2680844709 2047994.7011796285 1984875.5038790763 2081266.7525639108 2143569.385689203 0.9457757602680544 0.9197596480038702 0.9631085625632035 0.9201976122863424 0.8839385198184506 0.9016597647773571 0.9554133002889266 0.9259674620893583 0.9709350984664951 1.0 21.03158368616163 1.058103507218934 1.5866241938352221 1.0006909257688632 0.92487208454654 0.5297504939024275 0.02269808974759055 0.3039667407610898 1.5423384277318917 0.02224008772936114 0.006534002205464103 11.431507542219146 -1.058103507218934 -0.07581884122232319 KLPDFLTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLPDFLTAK 9 1 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7;Q9BZZ5-3 Q9BZZ5-2 API5 Apoptosis inhibitor 5 0 125.74 0.0024348000000000004 0.0 1336900.0 1359900.0 1351100.0 1002200.0 912200.0 1347300.0 1401000.0 1290900.0 2029200.0 1362200.0 False True 1329702.278943552 1405163.4494230917 1541323.1360282765 1129078.41724212 1028363.262967001 1254164.322203058 1333228.277660266 1387233.5130573777 1529130.8498869215 1275263.229761905 1.042688480237771 1.1018614954384276 1.208631363358642 0.8853689112113128 0.8063929383104687 0.9834552529497881 1.045453398596918 1.0878017029600844 1.1990707598245534 1.0 20.282363636859962 -0.12983560973306024 7.719317309963258 0.9999899024212432 1.0376546451684818 0.00973910923369814 0.11900508534457815 0.0 0.0 0.12329299176433398 0.029060436849779245 0.7415908970785416 0.12983560973306024 0.03766474274723863 KLPDSFFKPPEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPDSFFKPPEPK 13 2 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 0 ; 118.13 0.00025425 1287900000.0 4177500.0 3147470.0 2935610.0 2765430.0 2892840.0 3871300.0 3711300.0 3317800.0 5968800.0 3659000.0 False True 4155008.8041638853 3252231.636264204 3348918.3712204616 3115533.154454076 3261226.0267939684 3603686.1430599727 3531770.240457209 3565391.0834470303 4497869.217822326 3425479.487372492 1.2129714451599234 0.9494237662940503 0.9776495184296793 0.9095173875479372 0.9520494981260232 1.0520238571985068 1.0310294525121348 1.0408443829806313 1.3130626630236835 1.0 21.707874515247696 1.4238919695309222 9.317506972131477 1.1640140117879518 1.0076494854093447 0.22504992792403655 0.10527446281945088 0.3877642300386696 61.09406290193863 0.06325872312366804 0.024630457077915613 26.539453126953234 -1.4238919695309222 -0.1563645263786071 KLPEEEAECYFHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPEEEAECYFHSR 14 1 J3QQZ9;Q9NVS9-3;Q9NVS9;J3QQV6 J3QQZ9 PNPO Pyridoxine-5-phosphate oxidase 0 ; 102.29 0.0007673999999999999 203528000.0 292310.0 296870.0 267710.0 253160.0 256410.0 325230.0 291820.0 267630.0 351380.0 317690.0 False True 290736.235438694 306751.13848829555 305401.24102296575 285210.0300429206 289062.29363886063 302747.6156090707 277703.5517393427 287601.9095976035 264787.1072507724 297414.7522119071 0.9775447696405635 1.031391806246841 1.0268530352030698 0.9589639650413484 0.9719164617392771 1.0179307292509954 0.9337248730065674 0.9670062007976254 0.8902958084006284 1.0 18.18211668341127 2.684248363829475 0.802287153167806 0.9460102169879664 1.0074894740360565 0.25155126670873573 0.03617711623261678 0.8110183359613731 1.1092190882070403 0.0237585521728189 0.021434088300509586 483.33513215878077 -2.684248363829475 0.0614792570480901 KLPEEEVESSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLPEEEVESSR 11 1 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 0 84.365 0.020797 0.0 67887.0 91890.0 71179.0 84900.0 82933.0 87062.0 80005.0 74761.0 102880.0 85437.0 False True 67521.50393495472 94948.50310132207 81200.38450104099 95648.33129500679 93494.02596759741 81043.60886190365 76134.85250122022 80340.04544866586 77526.60252137133 79984.33751370432 0.8441840744556489 1.1870886982723816 1.015203563911851 1.1958382636927967 1.168904173915029 1.0132434846762073 0.9518720147950899 1.0044472198685224 0.9692722966929384 1.0 16.28742989950509 2.4991387073485996 18.579143392380324 0.9830588204554317 1.0906970927156066 0.19352533212874656 0.09738452056130974 43.41921802717263 36639.038711265224 0.030433196411756198 0.028288508400488653 315.60124469526676 -2.4991387073485996 0.10763827226017486 KLPEEHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLPEEHAR 8 1 P41743;E9PBE1;Q05513-2;Q05513-3;Q05513 P41743;Q05513 PRKCI;PRKCZ Protein kinase C iota type;Protein kinase C zeta type 0 147.2 0.00035126 33838000.0 144020.0 162400.0 152030.0 147390.0 139430.0 170420.0 160420.0 150770.0 222490.0 182790.0 False True 143244.61232212622 167805.385827127 173434.502531551 166049.55888776286 157185.5840336427 158639.2665255289 152659.87173608845 162021.22299454737 167660.3207132571 171124.18570560752 0.8370798769997143 0.9806058981972893 1.0135008199829685 0.9703453559359823 0.9185468634109732 0.927041761346599 0.8920999162486356 0.9468049319064671 0.979758179838416 1.0 17.38468415087235 1.1567809299346465 3.303472214888096 0.9980219333261031 0.9379823696122592 0.18579686348044533 0.04625844204993109 0.42110952422321307 8.198781226435392 0.04431649846792177 0.011906533913384938 14.347655156525013 -1.1567809299346465 -0.06003956371384389 KLPEELGR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLPEELGR 8 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;; 105.52 0.0070102 621400000.0 622000.0 721360.0 589130.0 674980.0 689840.0 822680.0 715450.0 721880.0 873640.0 755320.0 False True 618651.2211106969 745370.0315286716 672074.3831902436 760432.3987927405 777687.0349979786 765810.0679804143 680840.950215588 775750.3512323648 658343.1281762333 707114.8309380135 0.8748949874096597 1.054100407623909 0.9504458876908473 1.0754015691963346 1.0998030319436922 1.0830066553186835 0.9628435445377772 1.0970641786756243 0.931027181685494 1.0 19.431584992968702 4.7430438127586205 24.57658184102497 1.0340194212150975 0.8748949066332522 0.3626373930667177 0.06052509181129631 370.2733910076701 2029721.3820644943 0.013792832165545301 0.10891983049925712 55340.59354320662 -4.7430438127586205 -0.1591245145818453 KLPEYNPR ddPTM_BT-474_Trastuzumab_2h_R1 4 KLPEYNPR 8 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;; 136.57 0.0012594 3450070000.0 2117200.0 2765180.0 2441300.0 2345770.0 2479760.0 2650480.0 2819110.0 2474110.0 3978280.0 2839810.0 False True 2105801.2304430353 2857217.344713389 2785013.819840001 2642744.241482783 2795542.73731095 2467258.5561588057 2682738.879253989 2658740.651476021 2997886.2002208503 2658570.8945163377 0.7920801490705158 1.0747192601133138 1.0475604865698593 0.9940469321069454 1.051520853958469 0.9280394069038597 1.009090592538834 1.0000638527112569 1.1276307155864815 1.0 21.342219507741703 4.746835359290652 24.7665687211105 1.021558220980037 0.7920800189140029 0.6513683039118798 0.051221283274763364 574.5449598362611 1719587.5259308266 0.011914611800656373 0.13579526174587372 55825.851923428985 -4.746835359290652 -0.22947820206603398 KLPFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPFQR 6 1 K7EK07;Q71DI3;Q16695;P84243;P68431;Q6NXT2;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;P0DPK2;P0DPK5;Q5TEC6;A0A590UJL8 K7EK07;Q5TEC6 H3F3B;HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C 0 ; 91.093 0.077421 6051700000.0 8297000.0 9526000.0 8890400.0 8726000.0 9031000.0 10305700.0 9372600.0 8862800.0 14716100.0 9853100.0 False True 8252329.873883359 9843067.151411388 10142091.043257916 9830710.70530307 10181044.31906928 9593291.21600836 8919211.531191006 9524187.1403865 11089514.34063717 9224266.722336695 0.8946326165851453 1.0670839696749292 1.0995010604689799 1.065744411043304 1.103723973464008 1.0400058351281265 0.9669290578505289 1.0325142829319476 1.2022109371343037 1.0 23.137002798860813 4.73985927793141 24.477068578620774 1.0609939778518698 0.894632549367498 0.40981505515892147 0.06093488537723494 84.94100912004366 1600725.661090762 0.014581992434698274 0.09001163314935681 54936.28379757509 -4.73985927793141 -0.16636142848437174 KLPGDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLPGDDR 7 1 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 0 87.323 0.031149 61067000.0 296290.0 329970.0 256920.0 282710.0 277440.0 324570.0 344890.0 326790.0 397050.0 343650.0 False True 294694.80756091344 340952.8519789226 293092.10281132726 318501.0570130908 312770.33948428516 302133.2398555975 328206.3530922551 351176.7292059967 299202.34769741923 321717.9627864326 0.916003585900306 1.0597880485935403 0.9110218785200124 0.9900008512254652 0.9721879896768861 0.9391245587868027 1.020167945394239 1.0915670550827148 0.9300144297383856 1.0 18.295436964047077 2.1474874550040024 7.574613496578025 1.026662532013473 0.9681595982184578 0.11567017469984608 0.05477021820674501 0.3672367945912182 26.435240814219327 0.01970551503245929 0.01454215803511291 140.43891159192924 -2.1474874550040024 -0.058502933795015255 KLPGIIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPGIIGR 8 1 P50135;P50135-3;P50135-2 P50135 HNMT Histamine N-methyltransferase 0 ; 85.212 0.027103 893100000.0 1345600.0 1424930.0 1495180.0 1402050.0 1204620.0 1463080.0 1575610.0 1281990.0 1740950.0 1540210.0 False True 1338355.4391102144 1472357.9336616264 1705688.3476624652 1579549.386244575 1358021.2166578707 1361940.723319862 1499391.724885291 1377658.6036133163 1311916.2000348114 1441912.4791598758 0.9281807727262348 1.0211146341693982 1.1829347289207714 1.095454411466702 0.941819449020315 0.9445377184844056 1.0398632001291126 0.9554384357752443 0.9098445425752844 1.0 20.459552168220544 3.2359651800320877 24.999999889280307 0.9667017513726974 1.0633645049076252 0.30146913203162595 0.06805722166703379 86.90398003498419 837087.6209498069 0.0204682997525878 0.025548257851646623 1721.7305280901746 -3.2359651800320877 0.09666275353492781 KLPIDVTEGEVISLGLPFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPIDVTEGEVISLGLPFGK 20 1 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;K7ES59;K7EKJ7;K7ELW5 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ; 157.97 1.1552e-09 1470530000.0 3052990.0 3084500.0 2872710.0 2767920.0 2808380.0 3491800.0 3522900.0 3198200.0 4721900.0 3641500.0 False True 3036553.0410590763 3187165.717880376 3277162.5979570593 3118338.388198765 3166010.546427615 3250420.0848130663 3352483.868215097 3436865.9241305324 3558251.015218338 3409096.352354996 0.8907208031716183 0.9349004511646288 0.961299493836014 0.9147111333607876 0.9286949441134282 0.95345503583895 0.9833936978340929 1.0081457280479484 1.0437519645815545 1.0 21.700957944718816 2.1248469517377697 1.4247142936617188 1.02179354614994 0.9274173739448082 0.8079755865674695 0.019571914247113898 0.17561570400670154 0.6785324743119039 0.012466927964342213 0.006583966653567607 133.30515731421363 -2.1248469517377697 -0.09437617220513173 KLPIQEFHLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPIQEFHLSR 11 1 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ; 186.58 2.5734e-06 2146500000.0 960700.0 1886760.0 2140200.0 2111700.0 2000340.0 2372400.0 2334600.0 1954780.0 2215600.0 2290700.0 False True 955527.6979438036 1949559.6660294943 2441521.557048121 2379041.003482523 2255071.442055921 2208401.5720289014 2221666.478961924 2100655.609771712 1669595.0675189563 2144505.564833061 0.44557016480308675 0.9090951769953826 1.1385009193194522 1.1093657402878876 1.0515577478725113 1.0297952163163608 1.0359807479142027 0.9795524172189489 0.7785454581690143 1.0 21.032213628989247 4.710973485766209 3.389299227561815 1.0191616249761926 0.38801997802474647 0.7732684752037288 0.09206690307113558 0.1269697916875512 2.490983823157988 0.02308957747353222 0.1991618725561894 51401.22695177557 -4.710973485766209 -0.6311416469514461 down KLPPPPGS(ph)PLGHSPTASPPPTAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLPPPPGSPLGHSPTASPPPTAR 23 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 KLPPPPGS(0.901)PLGHS(0.099)PTASPPPTAR;KLPPPPGS(0.926)PLGHS(0.074)PTASPPPTAR;KLPPPPGS(0.5)PLGHS(0.5)PTASPPPTAR 164.2 6.8549e-12 2633380000.0 1064530.0 1229320.0 1292980.0 1351180.0 1200480.0 1312190.0 1132520.0 1009570.0 1436300.0 1266220.0 True False 1058798.6887604024 1270237.1730603664 1475020.3452163716 1522239.2494603933 1353354.0121975741 1221481.393863009 1077735.680953466 1084909.239892586 1082343.1104339585 1185408.7555345185 0.8931929039810189 1.0715604782989792 1.2443136920743114 1.2841471284510573 1.1416770847009028 1.030430548247659 0.9091679776462415 0.9152195264521934 0.9130547630769893 1.0 20.1769531878556 2.4917631277135373 3.0276930449283697 0.9258171208236285 1.1383074667294197 0.43953058448183024 0.10175284639443827 0.24206575680403558 4.540030089556984 0.039995192047604725 0.034690231848913636 310.2866765287862 -2.4917631277135373 0.2124903459057912 KLPPPPGSPLGHS(ph)PTASPPPTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLPPPPGSPLGHSPTASPPPTAR 23 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 KLPPPPGS(0.245)PLGHS(0.753)PT(0.001)ASPPPTAR 153.06 2.5866e-08 1540700000.0 518420.0 673050.0 576350.0 485580.0 534930.0 641140.0 611080.0 626050.0 691940.0 649080.0 True False 515628.88432187703 695452.0623826827 657495.0702759951 547054.3782123603 603050.1647214841 596819.5008812208 581519.7258477057 672769.0300174862 521420.6585209729 607655.158694654 0.8485551006092584 1.1444847499964146 1.0820200583640327 0.9002711001212029 0.9924216985451711 0.9821680805990193 0.95698969642076 1.107155959084932 0.8580864509421308 1.0 19.21289330800854 3.769537356401854 24.979400569393793 0.983432394663641 1.0369664306959872 0.04981070970072243 0.09385088777646022 2081.820735217525 1678757.7178703262 0.023415949230624525 0.042208106594916694 5882.167081883802 -3.769537356401854 0.05353403603234619 KLPPPPPQAPPEEENES(ph)EPEEPSGVEGAAFQSR ddPTM_BT-474_Trastuzumab_2h_R1 4 KLPPPPPQAPPEEENESEPEEPSGVEGAAFQSR 33 1 R4GMQ1;O60341 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 KLPPPPPQAPPEEENES(1)EPEEPSGVEGAAFQSR;KLPPPPPQAPPEEENES(1)EPEEPSGVEGAAFQSR;KLPPPPPQAPPEEENES(1)EPEEPSGVEGAAFQSR;KLPPPPPQAPPEEENES(1)EPEEPSGVEGAAFQSR 257.45 1.1189e-59 769940000.0 440827.0 473419.0 473302.0 456576.0 454778.0 555088.0 543015.0 480953.0 565977.0 554008.0 True False 438453.6364124838 489176.46522717073 539938.807585267 514378.47478620824 512691.28261960886 516716.073096601 516747.2899312562 516844.1550898487 426499.5520532478 518650.73512988776 0.8453735948194118 0.9431712559024221 1.0410451022498752 0.9917627411776259 0.9885097000608966 0.9962698172349023 0.9963300057828803 0.9965167695374294 0.822325166369306 1.0 18.984403813948763 4.660395831721314 3.4921644616840064 0.982421720850193 0.8387791604752943 0.3448112950611195 0.05507161589404636 0.26100989903432154 5.274132203848905 0.01289979248415333 0.08534730531409003 45750.4986259931 -4.660395831721314 -0.14364256037489864 KLPS(ph)DSGDLEALEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLPSDSGDLEALEGK 15 1 O60524-4;O60524-3;O60524;G3V5V3;O60524-5;O60524-2 O60524-4 NEMF Nuclear export mediator factor NEMF 1 KLPS(0.999)DS(0.001)GDLEALEGK 132.13 3.0215e-05 248760000.0 119880.0 97417.0 97866.0 73660.0 69935.0 124730.0 101890.0 88605.0 166620.0 111780.0 True False 119234.57939991998 100659.46595517997 111644.68213347888 82985.34844747013 78840.80771277923 116107.70868283788 96961.19144240144 95217.1550270734 125558.73359361288 104646.10470032728 1.1394077184370062 0.9619036106832284 1.0668785279031003 0.7930094358037828 0.7534041323234525 1.1095272873780915 0.9265628349957893 0.9098967926206584 1.1998414461118512 1.0 16.67515908479668 1.2531314896173096 24.993805171671426 1.0999207766290342 0.9506619743103367 0.16642281444127127 0.12667742480372632 344.55624849556415 591032.3144119707 0.08518432298771605 0.030807418096040203 17.911480707441097 -1.2531314896173096 -0.14925880231869748 KLPS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLPSPAR 7 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 KLPS(1)PAR;KLPS(1)PAR;KLPS(1)PAR 91.855 0.0098602 2816300000.0 1270520.0 1135180.0 1053140.0 950650.0 960720.0 1161390.0 1209820.0 1163890.0 1768580.0 1189090.0 True False 1263679.661488042 1172963.7800691982 1201412.9579430213 1071002.1925276588 1083061.9973664312 1081105.8429179909 1151296.3846387884 1250745.3819136682 1332737.1567578425 1113201.2581688326 1.135176278516555 1.0536852805921837 1.079241466111252 0.9620921506048336 0.97292559581546 0.9711683624004905 1.0342212391428847 1.1235572837665397 1.1972113281206103 1.0 20.086283013678475 -0.3040477916076837 6.534493136321361 1.0000000084646126 1.0551993011683412 0.05186660833401002 0.07399732855009929 0.0 4.0249953102394365e-18 0.07690620927743089 0.018126967379362313 0.4965376773307231 0.3040477916076837 0.055199292703728586 KLPVDSVFNKFEDEDS(ph)DDVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPVDSVFNKFEDEDSDDVPR 21 2 P49756 P49756 RBM25 RNA-binding protein 25 1 KLPVDS(0.016)VFNKFEDEDS(0.984)DDVPR;KLPVDSVFNKFEDEDS(1)DDVPR 117.03 6.0497e-05 826680000.0 568190.0 511830.0 464570.0 507040.0 441050.0 673240.0 663080.0 541670.0 929450.0 677610.0 True False 565130.9281718441 528865.9521422312 529977.4178851712 571231.212012017 497215.10319183907 626700.5034364933 631004.2871884152 582092.1659445275 700399.501491918 634364.3496688918 0.8908617397349264 0.8336943152910062 0.8354464089317037 0.9004781121608942 0.7838005137762895 0.9879188572995967 0.9947032608591098 0.9175991151589021 1.104096568253707 1.0 19.274952170445466 2.7198276514479045 24.543954519196046 0.9888336889092318 0.8501367868147374 0.673894630765001 0.052535042907611046 407.890982163166 534418.4956056977 0.01647668615844431 0.015560486762690265 524.5992331949316 -2.7198276514479045 -0.13869690209449448 KLPVDSVFNKFEDEDSDDVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPVDSVFNKFEDEDSDDVPR 21 2 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 183.01 2.5127e-17 1424390000.0 1460010.0 1444660.0 1368810.0 1277830.0 1150350.0 1558350.0 1691140.0 1513680.0 2154060.0 1645410.0 False True 1452149.468382359 1492744.6347845902 1561526.5500901951 1439603.1469811378 1296840.253841361 1450624.9324613195 1609333.097417833 1626638.4879112968 1623220.775925203 1540398.5250936276 0.9427102433080395 0.9690639211004561 1.0137159473034962 0.9345653891051582 0.841886195497712 0.9417205410354106 1.0447511284912556 1.0559854877895494 1.0537667684578842 1.0 20.554872216215486 2.2396985460379395 9.710346844321666 1.0447720451710543 0.9404165378813539 0.557881420751982 0.04260660463923467 0.07655793042801866 117.24834037892215 0.016800484357378152 0.013249141294628326 173.65949990765898 -2.2396985460379395 -0.10435550728970033 KLPVESIQIVLEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPVESIQIVLEELR 15 1 K7ENE3;Q9BRG1;K7EKV4 K7ENE3 VPS25 Vacuolar protein-sorting-associated protein 25 0 ; 234.77 1.8582e-17 406070000.0 575710.0 670450.0 718900.0 537430.0 453490.0 637490.0 682770.0 558030.0 871600.0 619000.0 False True 572610.4413273935 692765.5229544158 820114.8712091828 605468.5828960602 511239.2634541831 593421.8167900447 649741.8066653104 599673.0322189237 656805.8588416326 579494.8900474381 0.9881199147079951 1.1954644205709997 1.4152236461343901 1.0448212629562545 0.88221530894316 1.0240328723890326 1.1212209422797874 1.0348202245059206 1.133410958615814 1.0 19.144436414122875 3.523287726487589 24.990155578387718 1.0336270554007478 1.20432785319555 0.30132516459150016 0.11536063139810679 509.18398872437643 275622.60548138054 0.0311421992201315 0.04824347909754017 3336.4738586100407 -3.523287726487589 0.17070079779480207 KLPVESIQIVLEELRK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLPVESIQIVLEELRK 16 2 K7ENE3;Q9BRG1;K7EKV4 K7ENE3 VPS25 Vacuolar protein-sorting-associated protein 25 0 ; 218.43 7.5045e-15 276230000.0 230790.0 231480.0 209806.0 217790.0 208090.0 273040.0 288040.0 244480.0 333460.0 281580.0 False True 229547.45228317974 239184.67186738522 239344.86113355655 245362.19166948827 234589.02805393934 254165.3874670249 274106.40478034486 262724.3390442854 251283.25113507462 263609.3233272333 0.870786546491868 0.9073452670354591 0.9079529438207468 0.9307796422849057 0.8899117265390897 0.9641744998203834 1.0398206001237706 0.9966428187297104 0.9532411371624454 1.0 18.008041870883304 2.564235431880709 4.148650530117457 0.9991360877813829 0.9041114222175998 0.7773107624507147 0.024357557658311272 0.1060082230640837 3.3009084619758573 0.008307042481421332 0.0076603257692012035 366.6362750206115 -2.564235431880709 -0.09502466556378308 KLQDVFEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLQDVFEMR 9 1 O60885;O60885-2;O60885-3;M0QZD9;Q15059;Q15059-2 O60885;Q15059 BRD4;BRD3 Bromodomain-containing protein 4;Bromodomain-containing protein 3 0 94.465 0.013955 280260000.0 744560.0 941700.0 893870.0 884970.0 759200.0 834190.0 819060.0 683260.0 935240.0 820540.0 False True 740551.371688393 973043.9152303294 1019719.1263426786 997007.1112619828 855879.6198690498 776524.4087720391 779438.93868695 734248.330723979 704762.6335739433 768172.4347003625 0.964043147392104 1.266699859660911 1.327461231722583 1.2978949337734058 1.114176428633369 1.0108725250925392 1.0146666340494008 0.9558379050797154 0.9174536884402091 1.0 19.551070669190185 2.8612069109154192 2.491774245508332 0.9738456399707839 1.2250279864028597 0.5639244174344731 0.09682626594014226 0.21074940438606046 2.560707044060495 0.03314326271669375 0.03557526362203444 726.4519785096381 -2.8612069109154192 0.2511823464320758 KLQEDGLLSNVSHVIVDEVHER ddPTM_BT-474_Trastuzumab_2h_R1 1 KLQEDGLLSNVSHVIVDEVHER 22 1 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 0 183.07 1.7853e-17 33616000.0 42693.0 49684.0 44941.0 49725.0 46082.0 57547.0 51010.0 41972.0 64949.0 53328.0 False True 42463.14563163823 51337.70190538777 51268.302165825386 56020.17990158091 51950.269550586854 53568.91134106684 48542.451422876686 45104.16376949747 48943.18922201152 49924.56138360219 0.8505461931927023 1.0283055170165145 1.0269154248927372 1.1220965863103374 1.0405753823537849 1.0729971352069134 0.9723160319806143 0.9034463702732102 0.9803428986776637 1.0 15.60746213235677 2.0487106447252144 7.665668635619633 0.9473826606817434 1.0289005739983768 0.13960745676023545 0.06954908847221213 0.34375226215492954 46.1756153955432 0.0266313316576225 0.01955845174264596 111.86922894356647 -2.0487106447252144 0.08151791331663338 KLQELSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLQELSSK 8 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 155.42 0.00065622 3918200000.0 5559400.0 4644800.0 4533800.0 3904700.0 4059300.0 5380500.0 5694400.0 4881100.0 7316600.0 5796800.0 False True 5529468.808107401 4799399.360159107 5172119.631503949 4399034.619642086 4576227.793643885 5008558.699334635 5418940.117279532 5245352.467723583 5513521.967417039 5426843.261109831 1.0189107261919672 0.8843814219866731 0.9530622836610562 0.8106065364309877 0.843257778686612 0.9229230435356902 0.9985436941053863 0.9665568389109636 1.0159722148101034 1.0 22.371681810474534 2.342653279172022 4.429758898955627 0.9898710153355853 0.8975338426043942 0.3922252565327792 0.054776754934593455 0.2319868273463442 7.98103938345316 0.020107019043085476 0.016479137922827892 220.11684492897245 -2.342653279172022 -0.09233717273119113 KLQIQCVVEDDKVGTDLLEEEITK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLQIQCVVEDDKVGTDLLEEEITK 24 2 P29692;P29692-2;E9PRY8;P29692-4;E9PQZ1;H0YE72;H0YE58;P29692-3 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 222.43 4.7588999999999994e-33 115650000.0 333910.0 238050.0 215940.0 179530.0 186110.0 315500.0 284680.0 276830.0 474220.0 299290.0 False True 332112.26566088834 245973.35034573634 246342.47501587291 202258.47959237426 209810.00533960576 293690.2276071142 270908.9408167915 297488.46031425666 357354.8352224409 280189.0559649399 1.1853149100243432 0.877883504402524 0.8792009172788597 0.7218643101380909 0.7488158472751317 1.0481859350133351 0.9668790948447694 1.0617418988394802 1.2754061146026945 1.0 18.096041080407335 1.9940103992011664 1.4667254983674192 1.1280951899585534 0.883742833819853 0.30267132621398785 0.14019847312892958 0.48899501322551814 1.9600329312009208 0.09755565778979924 0.046287966779211924 98.63031024212047 -1.9940103992011664 -0.24435235613870043 KLS(ph)DASDER ddPTM_BT-474_Trastuzumab_2h_R1 3 KLSDASDER 9 1 Q658Y4;E7ER68 Q658Y4 FAM91A1 Protein FAM91A1 1 KLS(0.999)DAS(0.001)DER;KLS(0.916)DAS(0.084)DER;KLS(0.991)DAS(0.009)DER 130.15 0.00039105 1420080000.0 5107440.0 4752470.0 3931980.0 3591290.0 3709780.0 4885700.0 4606970.0 4401090.0 5643960.0 4575350.0 True False 5079942.110529927 4910653.091021213 4485568.606617163 4045946.945776736 4182198.4934112257 4547963.058700717 4384113.260765542 4729521.684082188 4253081.68318933 4283347.245845796 1.1859748507330823 1.1464522508147827 1.047211059287218 0.9445759854517276 0.9763855819691787 1.0617778101253779 1.0235250632592243 1.1041649001651954 0.992934132835992 1.0 22.030307208858204 4.261309367771105 3.384806605481374 1.0230230116705452 1.1765694699595906 0.6641406108142897 0.04252150054410827 0.15308760937807028 3.581666471449383 0.011984696909728849 0.035818764363923686 18251.954092961972 -4.261309367771105 0.15354645828904534 KLS(ph)DGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSDGHK 7 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 KLS(1)DGHK;KLS(1)DGHK 96.342 0.007841500000000001 449170000.0 941650.0 639320.0 595810.0 526100.0 548230.0 514720.0 764530.0 727490.0 1273780.0 976990.0 True False 936580.2610271492 660599.3797228984 679694.8691266422 592704.2060577514 618043.8408862074 479138.61792055087 727546.7631117807 781778.9979193679 959873.9867775303 914637.6617567795 1.0239904829943518 0.7222525458377254 0.7431302006754525 0.6480207746085175 0.6757253355379079 0.523856208807596 0.7954480703477198 0.8547417525075176 1.0494581919291008 1.0 19.802840800219634 1.5199757093561832 2.2410281909157805 1.023564981306304 0.7178832708620555 0.4769282658519085 0.1208824118761434 0.24136110750897405 2.47769621832899 0.09801379047779346 0.033496659656162955 33.11126014149193 -1.5199757093561832 -0.3056817104442484 KLS(ph)FTESLTSGASLLTLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSFTESLTSGASLLTLNK 19 1 P19838;P19838-2;P19838-3 P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 KLS(0.754)FT(0.246)ESLTSGASLLTLNK;KLS(0.916)FT(0.083)ES(0.001)LTSGASLLTLNK 285.43 3.1539999999999994e-40 867810000.0 1797910.0 1382060.0 1530090.0 1250760.0 1389160.0 1919330.0 1860860.0 1651900.0 2356200.0 1985320.0 True False 1788230.2523265814 1428061.0316270874 1745513.3722193032 1409106.0877566873 1566061.2918035935 1786651.2347168368 1770843.09262447 1775173.1661782349 1775546.0814624303 1858615.177882033 0.9621304472313317 0.7683468039115126 0.9391472710388528 0.7581483808619386 0.8425957726161386 0.9612808805063122 0.9527755469222075 0.9551052780065621 0.9553059194780368 1.0 20.825796663717266 2.7368001681221696 23.857526285900704 0.9605738630214414 0.8487082438510998 0.4488184888812451 0.06116667175221912 72.99215397187052 989177.1551871555 0.01787873001288842 0.017682393822451167 545.5067993445252 -2.7368001681221696 -0.11186561917034166 KLS(ph)GDQITLPTTVDYSSVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSGDQITLPTTVDYSSVPK 20 1 O00559-2;E9PND3;E9PN10;O00559;E9PJ38 O00559-2 EBAG9 Receptor-binding cancer antigen expressed on SiSo cells 1 KLS(0.998)GDQIT(0.002)LPTTVDYSSVPK;KLS(0.999)GDQIT(0.001)LPTTVDYSSVPK 133.15 6.9099e-06 30116000000.0 390260.0 345870.0 322330.0 282750.0 305250.0 408280.0 354520.0 347760.0 559490.0 397880.0 True False 388158.88352196186 357382.0738671696 367711.26225741504 318546.12100898917 344121.77814150054 380056.56458774226 337370.5132020825 373711.61708949925 421611.18628190184 372486.95775779424 1.0420737570477787 0.959448556315772 0.9871788920365783 0.8551873142793914 0.9238492005544584 1.020321803682775 0.9057243647748175 1.0032877911728155 1.1318817410945436 1.0 18.50683038643427 1.4688015704939335 5.918920197439252 1.067603024069004 0.9550775027367276 0.352978648409766 0.05917905863922111 0.15545575987446447 12.717068336181176 0.03484486069238804 0.014652390315063527 29.430766324214808 -1.4688015704939335 -0.11252552133227633 KLS(ph)GDQPAAR ddPTM_BT-474_Trastuzumab_2h_R1 9 KLSGDQPAAR 10 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR 164.93 3.6794e-06 46893630000.0 25750360.0 23797080.0 22153610.0 21094740.0 21146800.0 25214690.0 26171800.0 24752080.0 33159560.0 24960360.0 True False 25611722.922893923 24589151.422161356 25272645.725369934 23765331.921107598 23839719.633096438 23471657.82929581 24905770.048014957 26599205.898115512 24987830.75333946 23367368.455160692 1.096046521971008 1.0522858604872485 1.0815358081020228 1.017030735262747 1.0202141366000255 1.004463034608935 1.0658354660605571 1.1383055798155597 1.0693472310024232 1.0 24.477991936609715 1.9990032217960585 24.999670235589452 1.0889563001757523 1.0440038869657493 0.006257285986923322 0.04216129092427852 60.08001523075562 1506853.3173280063 0.015892087798403832 0.011590484941600244 99.77074652476003 -1.9990032217960585 -0.044952413210002984 KLS(ph)HDAESEREDPAPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSHDAESEREDPAPAK 17 2 Q92766;Q92766-2;Q92766-5;Q92766-3;C9JU34;Q92766-6 Q92766 RREB1 Ras-responsive element-binding protein 1 1 KLS(0.999)HDAES(0.001)EREDPAPAK;KLS(1)HDAESEREDPAPAK 117.31 0.00011663 1174700000.0 664150.0 867120.0 824660.0 747970.0 752150.0 1156490.0 983810.0 967870.0 1468460.0 1025870.0 True False 660574.2901940027 895981.5650148911 940764.9599267835 842662.9253089081 847931.8441576742 1076544.5683846313 936219.3517808326 1040097.3741442754 1106577.709355878 960398.0983085061 0.687812992713578 0.9329272585950887 0.9795572914853733 0.8774100311038119 0.8828962131964733 1.120935755996068 0.9748242457265814 1.0829856660234325 1.152207309973676 1.0 19.873273021316674 6.13293498486773 0.3425503415230664 1.0783171305127917 1.819700256465082e-15 0.6004210755660323 0.08166823310435023 12.19890499812694 0.5429469511340771 0.0738383667088304 6.582485517741257 1358110.1183796744 -6.13293498486773 -1.0783171305127899 KLS(ph)LPTDLKPDLDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSLPTDLKPDLDVK 15 2 H0Y332;Q5T5C0-2;Q5T5C0;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 KLS(1)LPTDLKPDLDVK 129.15 3.5284e-05 513770000.0 1030400.0 642580.0 548000.0 475420.0 466930.0 818810.0 868950.0 794140.0 1521600.0 908190.0 True False 1024852.4408882018 663967.8868521879 625153.6366986122 535608.1232540896 526390.7677890621 762207.5919714139 826915.5687886423 853402.7593612097 1146622.0683953983 850228.536659423 1.2053846662391292 0.7809287247178746 0.7352771751873469 0.6299578291720391 0.6191167963583879 0.8964737821740889 0.9725803512048912 1.0037333758688674 1.3486045444916677 1.0 19.69749115614517 1.904233196108509 1.5518190988463745 1.1507216709828596 0.7865005818033564 0.38498755539887775 0.17710135897639892 0.39307091997769145 1.7680401426146366 0.12611267217099553 0.056322618431787375 80.21086431272754 -1.904233196108509 -0.36422108917950324 KLS(ph)LQER ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSLQER 7 1 Q96RR4-6;Q96RR4-5;Q96RR4-2;Q96RR4-3;Q96RR4-4;Q96RR4-7;Q96RR4;F5H4I7;J3KPJ3;Q8N5S9;Q8N5S9-2 Q96RR4-6;J3KPJ3 CAMKK2;CAMKK1 Calcium/calmodulin-dependent protein kinase kinase 2;Calcium/calmodulin-dependent protein kinase kinase 1 1 KLS(1)LQER 108.47 0.004438 735290000.0 326240.0 255510.0 248680.0 276460.0 253540.0 299570.0 289200.0 297480.0 400700.0 381930.0 True False 324483.5600886717 264014.4958909434 283691.9824346914 311459.8076539178 285826.8161506833 278861.43101192743 275210.2911487149 319679.4681728318 301952.8541049131 357554.90041327645 0.9075069582702416 0.7383886938363444 0.793422162881249 0.871082475149746 0.7993928088254786 0.7799122056210335 0.7697007951243731 0.8940710022526144 0.8444936812665795 1.0 18.447805250517973 0.7353581530578094 0.9145884621783843 0.9987625537224196 0.8086371610087991 0.5327517540381123 0.05149972508130375 0.7020621223905104 1.0879093565929723 0.04771361235095938 0.01593639966631243 5.436985228119297 -0.7353581530578094 -0.1901253927136205 KLS(ph)LSEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSLSEGK 8 1 K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26;K7EPU6 K7EMM8 GLYR1 Putative oxidoreductase GLYR1 1 KLS(0.999)LS(0.001)EGK 120.96 0.00089043 703280000.0 1456000.0 900190.0 907000.0 920600.0 831660.0 1214200.0 1110000.0 1256600.0 1987900.0 1198700.0 True False 1448161.0577768057 930152.2799736543 1034697.7162146723 1037147.8656087543 937566.9713649825 1130265.21191936 1056305.059388219 1350373.8728855073 1498008.6814952756 1122197.9397412976 1.2904684695024953 0.8288665012057357 0.9220278166374134 0.9242111653206653 0.8354737949181421 1.0071888139269995 0.9412823014375974 1.203329488554231 1.3348881052487178 1.0 20.097895738583478 1.720540605216943 5.502749380883012 1.2022148509019754 0.9522295940452096 0.31309177293921264 0.14385439828951121 0.15189915973536627 11.338419372352941 0.0698634320377688 0.03545700089600143 52.54611418366032 -1.720540605216943 -0.24998525685676587 KLS(ph)PIIEDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSPIIEDSR 10 1 O60566-3;O60566 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 KLS(1)PIIEDSR;KLS(1)PIIEDSR 115.68 0.00072922 944200000.0 1872780.0 1702120.0 1480600.0 1466720.0 1541780.0 2012500.0 2067700.0 1923790.0 2744700.0 2297100.0 True False 1862697.1605654163 1758774.035246734 1689055.6103940958 1652406.6016138108 1738116.5441539811 1873380.6119154284 1967677.4516189392 2067352.9786076793 2068305.4620957226 2150497.111353747 0.8661705011046681 0.8178453372297618 0.7854256587821353 0.7683835485710622 0.8082394228652692 0.8711383995936304 0.914987256309439 0.9613372497423499 0.9617801629102005 1.0 21.036238762713957 2.2102985883497857 1.361533343103454 0.9766295971855155 0.8052633889745814 0.8844055229382464 0.02620656264586464 0.14318668819197528 0.5141143965906805 0.017386301510417757 0.00984470757289175 162.29255158761504 -2.2102985883497857 -0.17136620821093407 KLS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSPLR 6 1 Q8IZD2-6;Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-8;Q8IZD2-4;Q8IZD2-3 Q8IZD2-6 KMT2E Histone-lysine N-methyltransferase 2E 1 KLS(1)PLR 82.645 0.035952 385420000.0 644830.0 682060.0 596540.0 566070.0 483630.0 640110.0 733060.0 576080.0 923130.0 705120.0 True False 641358.3069273487 704761.9547860237 680527.6467813693 637734.4039595352 545217.4138004066 595860.7023568613 697599.0872388537 619070.0148749668 695636.9808082564 660118.6379163963 0.9715803646322383 1.0676292325430168 1.0309171832042074 0.9660905893711548 0.825938524507254 0.9026569894127529 1.0567783534195625 0.9378162943997527 1.0538059991821631 1.0 19.33236580641132 3.7113632831002343 6.3200664691452 0.9569997910435467 1.0279274243939895 0.1351974545947472 0.06818293751782457 0.32135840920026687 47.03376237562679 0.018715372073416104 0.03005066177875689 5144.738239780577 -3.7113632831002343 0.07092763335044283 KLS(ph)PPPLPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSPPPLPPR 10 1 F5GWN5;O00750 F5GWN5 PIK3C2B Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta 1 KLS(1)PPPLPPR 58.754 0.06679 370360000.0 274710.0 279640.0 271420.0 228950.0 254120.0 228960.0 261200.0 247530.0 369240.0 256830.0 True False 273230.9918831505 288947.64835405024 309633.57677506824 257935.04652522758 286480.6757127542 213132.53411386622 248564.75811910204 266001.9455318713 278245.7495625108 240438.88951677442 1.1363843529317594 1.2017508853695298 1.2877849228024587 1.0727675836617625 1.191490595753927 0.886431203131126 1.0337959829154872 1.1063183084336838 1.1572410358479 1.0 17.87531073644003 3.2794513459881154 1.9149530212860166 1.052895107665504 1.2006975541060887 0.3519346090703147 0.08775008103004064 0.3797825333290569 2.8649547374579027 0.028104424406604035 0.040366103143641655 1903.0550263742234 -3.2794513459881154 0.1478024464405847 KLS(ph)PQDPSEDVSSVDPLK ddPTM_BT-474_Trastuzumab_2h_R1 3 KLSPQDPSEDVSSVDPLK 18 1 Q53T59;H7BZZ1;H7C0Y9;F8WDN8 Q53T59 HS1BP3 HCLS1-binding protein 3 1 KLS(0.999)PQDPS(0.001)EDVSSVDPLK;KLS(1)PQDPSEDVSSVDPLK;KLS(0.984)PQDPS(0.012)EDVSS(0.004)VDPLK 169.08 1.1712e-11 1229790000.0 1586940.0 1058780.0 1044580.0 922110.0 942040.0 1488890.0 1388170.0 1309220.0 1778180.0 1452260.0 True False 1578396.0913656072 1094020.852253975 1191647.784347877 1038849.0314539323 1062003.210091465 1385966.5387700682 1321018.913775626 1406920.6444844538 1339971.3653912519 1359575.5234576594 1.1609477106144463 0.8046782494816263 0.8764851703988387 0.7640980685000429 0.7811285153108586 1.019411216851927 0.9716407003386053 1.0348234579175026 0.9855806774039662 1.0 20.374724863600807 2.7181886086220546 24.365288802370706 1.004382673836998 0.8670708104170914 0.25709585495765863 0.1053241780738403 759.7930396804572 908724.5255533482 0.03370343798425802 0.031814961801624755 522.6231083531632 -2.7181886086220546 -0.13731186341990664 KLS(ph)PTEPK ddPTM_BT-474_Trastuzumab_2h_R1 6 KLSPTEPK 8 1 O14828;O14828-2 O14828 SCAMP3 Secretory carrier-associated membrane protein 3 1 KLS(0.929)PT(0.071)EPK;KLS(0.977)PT(0.023)EPK;KLS(0.69)PT(0.31)EPK;KLS(0.657)PT(0.343)EPK;KLS(0.875)PT(0.125)EPK;KLS(0.992)PT(0.008)EPK 133.42 0.00056363 5292490000.0 7337450.0 5667510.0 5204710.0 4421680.0 5096660.0 7199420.0 6227320.0 6315330.0 9722500.0 6055250.0 True False 7297945.984467325 5856149.644267861 5937487.927849689 4981464.234634941 5745689.440729436 6701741.041011756 5926080.74092743 6786611.99319596 7326520.149825348 5668798.760839657 1.2873884384257732 1.033049485672773 1.0473979018034913 0.8787512919045819 1.0135638400891815 1.1822153729124618 1.0453856259398533 1.1971869666777046 1.2924290416582278 1.0 22.43461162452988 2.739825252416831 24.962142290046497 1.150705383322457 1.0410917511793685 0.12142389082657645 0.1203835929001639 210.48264546727685 4154682.276043114 0.03801821513046498 0.03837263058073057 549.3197989278025 -2.739825252416831 -0.1096136321430885 KLS(ph)PTKEAFGEQPLQLTTKPDLLAWDPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSPTKEAFGEQPLQLTTKPDLLAWDPAR 29 3 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 KLS(0.98)PT(0.02)KEAFGEQPLQLTTKPDLLAWDPAR;KLS(0.785)PT(0.215)KEAFGEQPLQLTTKPDLLAWDPAR 240.87 1.1144999999999997e-44 1053870000.0 565950.0 475970.0 436610.0 467270.0 438367.0 666350.0 719510.0 608460.0 1201420.0 710770.0 True False 562902.9880829563 491812.3737200592 498080.892917849 526426.3340897276 494190.43904522643 620286.7929191777 684704.5525048814 653866.3748972745 905346.1392032075 665408.0500791873 0.8459515751514693 0.7391139522005042 0.7485345163145751 0.791133101000326 0.7426877973394146 0.9321900942517304 1.0289995025208933 0.9826547406804904 1.3605878965477893 1.0 19.34387979442836 2.2138373658842627 1.1677814199814187 1.1338763867640071 0.766388992782981 0.6944723180230374 0.1007215934033689 0.265113119964252 0.6921904357482835 0.06531040345601402 0.03618912406846839 163.62036829475966 -2.2138373658842627 -0.36748739398102614 KLS(ph)SIGIQVDCIQPVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSSIGIQVDCIQPVPK 17 1 Q9Y2H0-3;Q9Y2H0 Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 1 KLS(0.846)S(0.154)IGIQVDCIQPVPK 167.72 1.3392e-09 355970000.0 1028000.0 763000.0 789240.0 645780.0 675790.0 1113200.0 970930.0 1047900.0 1338000.0 1071200.0 True False 1022465.3622215365 788395.9937567591 900358.1318029435 727535.6817866854 761847.8507788536 1036247.1041909333 923962.4065872104 1126099.6191283823 1008267.8282814432 1002835.0988995397 1.019574766921838 0.7861671321854459 0.8978127438807745 0.7254788774196735 0.7596940430334627 1.0333175467512636 0.9213502874013083 1.1229160410959955 1.0054173706004756 1.0 19.935652965345557 2.7264412171534307 24.502068885498225 1.024351086103068 0.8319800810090321 0.499866599475318 0.08918990475061464 456.7755914308515 923471.8815102788 0.02865518833067205 0.02720968114625696 532.6491240497121 -2.7264412171534307 -0.19237100509403593 KLS(ph)SSDAPAQDTGSSAAAVETDASR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSSSDAPAQDTGSSAAAVETDASR 25 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 KLS(0.683)S(0.158)S(0.158)DAPAQDTGSSAAAVETDASR 256.79 4.0444e-45 1236700000.0 400070.0 400190.0 400240.0 371140.0 346850.0 451280.0 364320.0 333920.0 533510.0 433240.0 True False 397916.0675719554 413510.0822300363 456590.3130515556 418126.2859461588 391019.29155898304 420084.0757988545 346696.4497624474 358838.8060114029 402033.60916773754 405590.2522845748 0.9810789715250973 1.0195266772336153 1.1257428167459942 1.0309081236320945 0.96407467723024 1.0357351376978123 0.8547948275620646 0.8847323228064919 0.9912309452783845 1.0 18.62966345431827 2.2568939101732632 24.997193702995187 0.9165358935945588 1.0277932773264131 0.37392920865749735 0.05774647661029822 218.49275621122655 297911.196925958 0.020622808185760337 0.017223532057526452 180.67327218883722 -2.2568939101732632 0.11125738373185434 KLS(ph)VPTS(ph)DEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSVPTSDEEDEVPAPKPR 19 2 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 KLS(0.891)VPT(0.123)S(0.986)DEEDEVPAPKPR 150.72 3.9022e-08 638040000.0 383760.0 232510.0 172530.0 215540.0 233260.0 375240.0 351940.0 373930.0 466930.0 377450.0 True False 381693.8787997442 240248.9547947369 196820.72434235679 242827.3419001859 262964.27835966117 349300.5420199477 334915.3176586399 401834.55537806614 351861.3580414456 353360.81784879667 1.080181671311026 0.6798969853458388 0.5569964591449879 0.6871937397543942 0.7441806365531556 0.9885095471151351 0.9477998146414479 1.1371791525284827 0.9957565759087849 1.0 18.430782551029388 2.6766108306234115 2.7352953626940413 1.0367395507644916 0.7277620075875988 0.49027334472573414 0.13363425717205585 0.22359632606840138 3.3024734098143465 0.04763321495042515 0.045694873712508736 474.90947092294033 -2.6766108306234115 -0.30897754317689285 KLSAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSASSPR 8 1 A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;J3QKD2;Q15326-5;Q15326-2;Q15326;Q15326-4;Q15326-6;Q15326-3 A0A0A0MRY2 ZMYND11 Zinc finger MYND domain-containing protein 11 1 KLS(0.099)AS(0.45)S(0.45)PR 53.75100000000001 0.082446 172160000.0 335990.0 402910.0 400790.0 361520.0 306210.0 385070.0 408540.0 367610.0 544970.0 417280.0 True False 334181.0671719982 416320.61578576145 457217.74827086966 407288.39493251924 345204.02845113503 358451.01725727913 388777.35942564247 395042.92488575605 410669.4457238699 390648.83314861864 0.8554513384271705 1.0657157540449538 1.170406025753891 1.0425946793435583 0.8836683976982608 0.917578620082323 0.9952093195622981 1.0112481885629125 1.0512496413054295 1.0 18.575512779364963 7.136636177579401 8.243870322763053 1.002112205060856 0.1274952119793653 0.0 0.0890176328702131 0.0 0.0 0.02052752366867775 0.0 13697338.154331923 -7.136636177579401 -0.8746169930814907 KLSCS(ph)LEDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 KLSCSLEDLR 10 1 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YDJ2;E9PI79 E9PP16 PPFIBP2 Liprin-beta-2 1 KLS(0.006)CS(0.994)LEDLR;KLS(0.176)CS(0.824)LEDLR;KLS(0.165)CS(0.835)LEDLR;KLS(0.111)CS(0.889)LEDLR;KLS(0.117)CS(0.883)LEDLR;KLS(0.213)CS(0.787)LEDLR 138.35 7.1133e-05 5801280000.0 7848490.0 8295350.0 7304450.0 7650880.0 7621160.0 9082630.0 8579970.0 7948950.0 11594850.0 8598680.0 True False 7806234.601889206 8571455.71010503 8332853.068582433 8619480.62353759 8591669.551845636 8454769.166311268 8164924.072431662 8542141.012950234 8737454.58052996 8049904.880699688 0.9697300424760669 1.0647896884664816 1.0351492585410713 1.0707555867155036 1.0673007543784616 1.0502942943564806 1.014288267182851 1.0611480681505596 1.0854109098206526 1.0 22.940540305476446 4.744440792344141 24.590235063468096 1.0513297931130967 0.9697299974599918 0.47627888569755217 0.02518179447941706 429.7301527935599 1797017.8581688716 0.0056817832157003145 0.05102053879540847 55518.8922684486 -4.744440792344141 -0.08159979565310493 KLSELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSELLR 7 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 182.39 0.0010550999999999998 9195700000.0 8095600.0 10084000.0 9987900.0 7936700.0 6122800.0 7932000.0 9470600.0 7813800.0 14137700.0 9108600.0 False True 8052014.189105711 10419639.844093272 11394109.503616901 8941485.406231813 6902502.287321153 7383679.509919589 9012470.896794666 8396905.433672428 10653653.270474257 8527281.349735195 0.9442651014858044 1.2219181491433777 1.3361948593347084 1.0485739873599316 0.8094610702079746 0.8658890456509778 1.0568985034221414 0.9847107289280639 1.2493610605219556 1.0 23.023654427113964 3.4896787550942343 24.77529668249027 0.9862504136865032 1.1761517966788018 0.22724975646204504 0.14199679504397536 723.2034838376491 1426840.618201182 0.039132533409071406 0.057436651461915546 3088.0104055687943 -3.4896787550942343 0.18990138299229853 KLSFT(ph)ESLTSGASLLTLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSFTESLTSGASLLTLNK 19 1 P19838;P19838-2;P19838-3 P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 KLS(0.327)FT(0.642)ES(0.03)LTSGASLLTLNK 188.51 9.3957e-15 76194000.0 187590.0 158020.0 146120.0 122790.0 135440.0 202200.0 174330.0 165860.0 253650.0 214730.0 True False 186580.03628320852 163279.6001748928 166692.425902192 138335.20141005766 152687.48118422582 188222.389927602 165896.99189472807 178237.31542001475 191141.35623586518 201025.74756039778 0.9281399947394845 0.8122322745042189 0.8292093322628217 0.6881466831431389 0.7595419145915683 0.9363098618551385 0.8252524560063365 0.8866392369289099 0.9508302222750703 1.0 17.617020769367187 1.3625611350136282 0.8738056063233972 1.0013429010748018 0.8107612332177115 0.45160340688208866 0.06749144389526368 0.49763121956335904 0.8056827539836195 0.06493475152599919 0.024547317646768627 23.04417342761412 -1.3625611350136282 -0.1905816678570903 KLSFTES(ph)LTSGASLLTLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSFTESLTSGASLLTLNK 19 1 P19838;P19838-2;P19838-3 P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 KLS(0.253)FT(0.253)ES(0.375)LT(0.099)S(0.019)GASLLTLNK 107.08 0.00018459 10823000.0 50226.0 43495.0 43460.0 35886.0 40392.0 60084.0 51478.0 47365.0 66006.0 61988.0 True False 49955.58879663317 44942.704781717286 49578.7902389082 40429.16392052552 45535.68177785916 55930.53450252248 48987.81247494307 50899.61681459658 49739.70573508581 58031.872769403155 0.8608302026567004 0.7744486372222158 0.8543372438783025 0.6966717079970143 0.7846667633629685 0.9637899284203596 0.8441535683261889 0.8770976083582985 0.8571101252019334 1.0 15.824557866971377 2.764344788189959 24.519774281726267 0.8936348941466938 0.7910178310895626 0.4505619214395178 0.06195997956429582 591.0715016445743 562085.5417712347 0.018247536129655136 0.019347896481960735 581.2256718721311 -2.764344788189959 -0.10261706305713125 KLSLS(ph)EGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSLSEGK 8 1 K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26;K7EPU6 K7EMM8 GLYR1 Putative oxidoreductase GLYR1 1 KLS(0.405)LS(0.595)EGK;KLS(0.258)LS(0.742)EGK 145.23 0.00035083 1250890000.0 2639290.0 1684190.0 1556850.0 1791520.0 1449890.0 2168750.0 1981300.0 2193930.0 3733500.0 2257680.0 True False 2625080.355892685 1740247.2460356464 1776040.9476172146 2018326.2483113182 1634524.8973286834 2018829.4171883615 1885456.949698993 2357652.1971508055 2813428.951336893 2113592.9295029077 1.241999024149874 0.8233597026864261 0.8402947052036736 0.9549266654606027 0.7733394990648008 0.9551647287461198 0.8920624796669955 1.115471273697579 1.3311120188117673 1.0 21.011266114853804 1.633465846923491 4.251143122817367 1.1815968607384224 0.9151735876253813 0.3408344032602294 0.14174050761073917 0.16020706855335948 6.635894162875242 0.07656145605280378 0.03499718113047281 42.99974171471227 -1.633465846923491 -0.26642327311304115 KLSPT(ph)KEAFGEQPLQLTTKPDLLAWDPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSPTKEAFGEQPLQLTTKPDLLAWDPAR 29 3 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 KLS(0.438)PT(0.562)KEAFGEQPLQLTTKPDLLAWDPAR 102.86 0.00031013 1242200000.0 211570.0 175450.0 177860.0 183250.0 161360.0 234290.0 248360.0 210300.0 441580.0 241110.0 True False 210430.93062763693 181289.7471882355 202901.14201316622 206449.43121095432 181908.23954434923 218094.08375933682 236345.8779726652 225993.65388176197 332758.52586884866 225722.15337534348 0.9322564377530129 0.8031544289176469 0.8988977775511949 0.9146174982109914 0.8058944894162071 0.9662059328163405 1.0470654937429027 1.0012028084189284 1.4741952479760332 1.0 17.784188492418576 1.8348552836683676 1.3879140497981697 1.2025084437679356 0.8775106991359127 0.4961947581373731 0.12782105594575374 0.32525487487794136 1.175629235740088 0.09210067346858244 0.03830704507124567 68.3683791067028 -1.8348552836683676 -0.3249977446320229 KLSS(ph)IGIQVDCIQPVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSSIGIQVDCIQPVPK 17 1 Q9Y2H0-3;Q9Y2H0 Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 1 KLS(0.343)S(0.657)IGIQVDCIQPVPK 102.21 0.00058721 527160000.0 859950.0 574930.0 591230.0 522450.0 519150.0 804490.0 713030.0 729720.0 1020400.0 851770.0 True False 855320.124749428 594066.1974974752 674470.0449367155 588592.1164319954 585260.6752568715 748877.4998657604 678538.0148608859 784175.411843078 768936.0926594791 797409.3093630145 1.072623701161294 0.744995312347214 0.8458266501497139 0.7381304801948874 0.7339526493920527 0.9391381453321354 0.8509281330097773 0.9834038838466683 0.9642928463849006 1.0 19.60496092262816 1.9209819840536502 1.373239379558755 0.9909011171469481 0.8256123706906281 0.2804124345576956 0.09818060929350053 0.5115497821976726 1.792334681788586 0.06995035223832025 0.030978074199930195 83.36466015323626 -1.9209819840536502 -0.16528874645631997 KLSS(ph)SDAPAQDTGSSAAAVETDASR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSSSDAPAQDTGSSAAAVETDASR 25 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 KLS(0.265)S(0.368)S(0.368)DAPAQDTGSSAAAVETDASR 115.77 0.00089004 885520000.0 292320.0 259300.0 253700.0 164750.0 201840.0 293580.0 255890.0 239050.0 362100.0 282140.0 True False 290746.1815998054 267930.6437498402 289418.75480006944 185607.3331078021 227543.12760059128 273285.50561298436 243511.62310527186 256889.124871304 272865.3068914126 264133.58364779316 1.100754313724447 1.014375529418138 1.095728724848532 0.7027025134194927 0.861469883753998 1.0346488388140553 0.9219260184270264 0.9725727464245923 1.033057981961365 1.0 18.010908221158825 KLSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 KLS(0.125)S(0.125)ERPS(0.375)S(0.375)DGEGVVENGITTCNGK 91.67 0.0066473999999999995 500750000.0 108840.0 111080.0 101250.0 99616.0 95751.0 125280.0 135110.0 116290.0 164540.0 128550.0 True False 108254.01753326089 114777.230650722 115505.11991922354 112227.37538614149 107944.32228935904 116619.68847739873 128574.2131296777 124968.15030865498 123991.32172304076 120345.82894280786 0.8995244661508511 0.9537283648215824 0.9597766780443652 0.9325406320436372 0.8969510886883965 0.969038058916193 1.0683728240451127 1.0384086545121876 1.030291808301602 1.0 16.876826614854902 2.4146373728558737 4.953922140890102 1.0380204034639025 0.9318173748264579 0.8041334348959335 0.02453436783762672 0.08266213863070239 4.05292582757881 0.008641778873032817 0.007224927678816928 259.7989388458822 -2.4146373728558737 -0.10620302863744457 KLSSWDQAETPGHT(ph)PSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 KLSSWDQAETPGHT(0.998)PS(0.002)LR;KLSSWDQAETPGHT(0.998)PS(0.002)LR 122.65 2.7164e-05 602560000.0 641070.0 559490.0 516850.0 669060.0 547300.0 685020.0 566050.0 495460.0 871960.0 638420.0 True False 637618.5503495731 578112.2864311535 589617.9874592662 753762.9273997336 616995.4108987494 637666.1797636301 538667.9989790112 532433.7410949025 657077.141665386 597675.4890211398 1.0668306833091838 0.9672678519541993 0.9865186012980556 1.2611575031029472 1.0323251032249146 1.0669103744039867 0.9012716915348665 0.8908408507213691 1.0993878011319036 1.0 19.189002852748693 2.2555838703043016 24.4312039172452 0.9537313636681188 1.0631954640050005 0.17618041224670367 0.09236570765105111 271.69387590825085 389924.8848244424 0.03306464595568764 0.027591738497148667 180.12909634860483 -2.2555838703043016 0.1094641003368817 KLSVEEFFMDLHNFR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLSVEEFFMDLHNFR 15 1 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ; 145.55 2.6233e-06 144348000.0 163596.0 260221.0 240406.0 261122.0 226721.0 261506.0 272118.0 196998.0 359981.0 275989.0 False True 162715.2173132245 268882.29867808375 274253.0751535888 294180.01842655847 255592.57546935035 243428.7057389097 258954.61274829152 211698.9910955749 271268.50604826736 258375.14573392938 0.6297634273258855 1.0406662680897893 1.0614530061494778 1.1385770778800077 0.9892305033571438 0.9421521758504926 1.0022427351234429 0.8193473505132693 1.0499017050487331 1.0 17.979107771825543 KLSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSVPTSDEEDEVPAPKPR 19 2 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 KLS(0.147)VPT(0.863)S(0.991)DEEDEVPAPKPR 66.85300000000001 0.050262 147120000.0 97565.0 84635.0 70746.0 98403.0 85864.0 97108.0 120160.0 103900.0 153150.0 117790.0 True False 97039.72088049047 87452.02481206205 80706.42186474457 110860.809710513 96798.2714441994 90395.15252764392 114347.40174422385 111653.5455935096 115408.23460486003 110272.54135490747 0.8799989524878389 0.7930534994255862 0.7318813992414883 1.0053346766872109 0.8778093825974165 0.8197430785304111 1.0369526297231295 1.0125235550177212 1.0465727295920708 1.0 16.750714068785555 2.23474795399981 24.9995511225722 1.0241380256864627 0.8514337164426953 0.6125139830924676 0.06729601966540331 68.59949517512841 449799.5264845183 0.025646150196321545 0.01966587612964579 171.6911675628921 -2.23474795399981 -0.17270430924376745 KLSVPT(ph)SDEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLSVPTSDEEDEVPAPKPR 19 2 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 KLSVPT(0.5)S(0.5)DEEDEVPAPKPR 110.91 0.010796 1202800000.0 464690.0 399810.0 385760.0 359120.0 341810.0 481420.0 513290.0 443460.0 648930.0 501190.0 True False 462188.16067191225 413117.434159751 440071.65491397236 404584.55517859646 385337.4774334039 448140.5685407822 488460.20174178336 476553.23704425275 489009.8967164989 469203.62510965264 0.9850481452778612 0.8804651372060599 0.9379118816721159 0.8622792611289933 0.8212585257484972 0.9551089219228688 1.0410409800811544 1.0156640135354507 1.0422125289467181 1.0 18.839854634238687 2.4429565622212928 4.737669384556644 1.0241535334254621 0.8957347123050453 0.66537307693376 0.0424851654705587 0.11577280417497315 6.230656862477921 0.01502837742283546 0.012739221259498609 277.3042733315773 -2.4429565622212928 -0.1284188211204168 KLSVPTS(ph)DEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 5 KLSVPTSDEEDEVPAPKPR 19 2 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 KLSVPT(0.008)S(0.992)DEEDEVPAPKPR;KLSVPT(0.005)S(0.995)DEEDEVPAPKPR;KLSVPT(0.021)S(0.979)DEEDEVPAPKPR;KLSVPT(0.046)S(0.954)DEEDEVPAPKPR;KLSVPT(0.124)S(0.876)DEEDEVPAPKPR 215.28 3.2301e-19 9896960000.0 2136950.0 2044540.0 1848500.0 1779830.0 1642890.0 2347900.0 2431840.0 2188740.0 3095510.0 2502550.0 True False 2125444.898637463 2112591.277949469 2108752.7325499724 2005156.2955099163 1852102.303328061 2185595.199362102 2314202.608669052 2352074.8929965203 2332663.038208886 2342835.116459153 0.9072106200327733 0.9017242669395944 0.9000858480118048 0.8558674408724126 0.7905389031931698 0.9328847702544701 0.9877786927518079 1.0039438441367277 0.9956582184641143 1.0 21.15982399341975 2.4065593339694735 3.689713675422864 0.9973351273101009 0.8725080020257254 0.7718792738425817 0.03208420787733829 0.11486857114601448 3.1459553698678944 0.012619901382383048 0.010478959956593975 255.01124642256417 -2.4065593339694735 -0.12482712528437545 KLT(ph)ATPTPLGGMTGFHMQTEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 KLT(0.675)AT(0.322)PT(0.003)PLGGMTGFHMQTEDR;KLT(0.555)AT(0.436)PT(0.009)PLGGMTGFHMQTEDR 127.24 1.4088e-05 423190000.0 194347.0 241370.0 253400.0 228490.0 231730.0 240260.0 246540.0 232070.0 325850.0 264290.0 True False 193300.6573459818 249403.85453875392 289076.51740771555 257416.81057239274 261239.44192868174 223651.39171120492 234613.91832574038 249388.24182758242 245548.63366629873 247422.78592994736 0.7812564902599992 1.0080068155459516 1.1683504262601003 1.040392499037154 1.0558422941799963 0.9039239893391515 0.948230848844158 1.0079437141985441 0.9924253044981102 1.0 17.91661884311971 2.768152195715699 24.641006648921937 0.9722098016544667 1.021016399663685 0.03812585901574295 0.09415172783555388 2011.9935616685432 1675389.8738584656 0.029839928009083333 0.03164584890581346 586.3436088706275 -2.768152195715699 0.04880659800921827 KLT(ph)SDEEGEPSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLTSDEEGEPSGK 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 KLT(0.735)S(0.265)DEEGEPSGK;KLT(0.594)S(0.406)DEEGEPSGK 159.19 2.6946e-05 2031300000.0 2547450.0 1823720.0 1696770.0 1505010.0 1556800.0 2343790.0 2249530.0 2128240.0 3593000.0 2309980.0 True False 2533734.812248304 1884421.4177379806 1935660.4674107712 1695544.1116878465 1755049.2521234697 2181769.3139882013 2140711.6398608843 2287060.0757837445 2707553.2937333467 2162555.0987266256 1.1716394249285207 0.8713865458723258 0.8950803004050827 0.7840466643768899 0.8115627912356513 1.0088849598666363 0.9898992359183804 1.0575730889494706 1.2520158655507236 1.0 21.044305460291802 1.9635170285416608 1.5452942141339832 1.1198431690877169 0.9039181563185313 0.32554057476151055 0.11720319059715749 0.43386714115835656 1.9289265141473746 0.07939704903002677 0.037160817801365376 91.94265245043343 -1.9635170285416608 -0.21592501276918552 KLTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 KLT(0.231)AT(0.744)PT(0.024)PLGGMTGFHMQTEDR;KLT(0.06)AT(0.912)PT(0.028)PLGGMTGFHMQTEDR;KLT(0.045)AT(0.95)PT(0.005)PLGGMTGFHMQTEDR 261.47 2.0026999999999997e-37 2161790000.0 896590.0 995770.0 872090.0 959280.0 802870.0 1077690.0 998840.0 946110.0 1328830.0 1018990.0 True False 891762.8590605137 1028913.6024943233 994872.6916578336 1080724.7496428068 905110.7355166809 1003191.8269093847 950522.2932606577 1016713.532449235 1001357.6519097385 953957.1857987702 0.9348038594770061 1.0785741936969533 1.042890295778635 1.132886009698529 0.9487959721785741 1.0516109547090304 0.9963993221192246 1.0657852863678756 1.0496882531172287 1.0 19.863564993055583 3.2273525124113753 24.99999939168003 1.0248869621840104 1.049209130187368 0.05211606394210888 0.05587067634482069 803.9204015610002 1793168.3314384667 0.015648048971733226 0.018850505935911765 1687.9225390512506 -3.2273525124113753 0.024322168003357625 KLTATEGPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 KLTATEGPGSPR 12 1 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 KLTATEGPGS(1)PR;KLTATEGPGS(1)PR;KLTATEGPGS(1)PR;KLTATEGPGS(1)PR;KLTATEGPGS(1)PR 157.58 3.8771e-05 4065240000.0 3010000.0 3185030.0 2904610.0 2978900.0 2830083.0 3376380.0 3412680.0 2943900.0 3655540.0 3468550.0 True False 2993794.49444244 3291041.798158705 3313553.8406772893 3356028.4345665053 3190477.2948338487 3142978.7977436082 3247595.6306963856 3163588.766821302 2754681.148726413 3247184.169424947 0.9219663370595391 1.0135063570297969 1.0204391459767728 1.0335195848040963 0.9825366004413786 0.9679090047732671 1.0001267132536902 0.9742560328450822 0.8483292000078478 1.0 21.63075778110589 1.4341824997823125 9.88832529963491 0.9197038001456906 0.9926362878354735 0.25717807315207064 0.044931682872053486 0.34859680667901993 73.06036393103452 0.02559013691136349 0.010471231858632095 27.17581014296928 -1.4341824997823125 0.07293248768978289 KLTATPTPLGGMTGFHMQTEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 276.75 1.1447e-45 1554040000.0 778990.0 1010490.0 933450.0 1020550.0 1002100.0 1005180.0 1030550.0 896980.0 1207440.0 1132660.0 False True 774796.0043939246 1044123.5487958965 1064871.646307153 1149751.525360651 1129711.495087953 935694.2725392046 980698.359416693 963917.202372149 909882.5908670743 1060372.6690809866 0.7306827372921935 0.9846760287596124 1.0042428264678545 1.0842900414975125 1.0653909969851088 0.8824202092554503 0.9248619735424277 0.909036257231682 0.8580781242274563 1.0 20.016139959910305 -0.28502492243875766 7.859325830093054 1.000006096335073 0.9447761463757159 0.03014752495483608 0.099022758757859 0.0 0.0 0.09763787211726782 0.023013467158248344 0.5187702679054975 0.28502492243875766 -0.05522994995935704 KLTDIINNDHENVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLTDIINNDHENVK 14 1 Q8N335;C9K0P5;C9JFA7;C9JM46 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein;Glycerol-3-phosphate dehydrogenase [NAD(+)] 0 ; 193.47 1.6532e-07 1226590000.0 1218020.0 1205940.0 1131060.0 995200.0 1135030.0 1407640.0 1332710.0 1157910.0 1751490.0 1402790.0 False True 1211462.3156547446 1246078.983893875 1290303.4166502408 1121192.2179598461 1279569.3426501153 1310333.1600281412 1268241.7258533991 1244319.1239478425 1319858.758263574 1313262.7412110595 0.9224828190416512 0.9488421050800321 0.9825173410922736 0.8537455474644088 0.9743437489668876 0.9977692345248319 0.9657181964089356 0.9475020381682048 1.0050226179769874 1.0 20.324724150841618 3.049645286502089 24.9999781737382 0.9768746130974509 0.9301382291774581 0.374828617217683 0.03426185370327698 136.17854181406162 68574.7138785548 0.00985584734675954 0.011779988369640658 1121.1024108829822 -3.049645286502089 -0.0467363839199928 KLTDTSKDEENHEESESLQEDMLGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLTDTSKDEENHEESESLQEDMLGNR 26 2 Q8IX12-2;Q8IX12;A0A0C4DGG8 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 117.61 0.00045279 153850000.0 132910.0 131820.0 116660.0 120800.0 120930.0 140570.0 160010.0 138880.0 263730.0 171520.0 False True 132194.42732768928 136207.54901312734 133084.71397310216 136093.26761409699 136329.7186917336 130852.72676618704 152269.70500244043 149243.93081835046 198737.27530094513 160573.44675434017 0.823264555875993 0.8482569924622095 0.8288089759741362 0.8475452845096164 0.8490178260936454 0.8149088744814541 0.9482869557841431 0.929443403221439 1.2376721015710115 1.0 17.29287381559166 1.5291752072987645 2.3319304484064647 1.1131209115542555 0.8455133086064203 0.6995779117377077 0.06753699108449811 0.13202923673704012 1.493809079454021 0.047973426663030935 0.01666701597659398 33.8201249120935 -1.5291752072987645 -0.26760760294783525 KLTGIKHELQANCYEEVKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLTGIKHELQANCYEEVKDR 20 3 G3V1A4;P23528;E9PP50;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 173.09 3.2294e-12 2223300000.0 1627700.0 2053800.0 2137800.0 2425100.0 2326000.0 2670500.0 3317800.0 2238100.0 4525500.0 3017400.0 False True 1618936.644054471 2122159.4914516844 2438783.6579092904 2732117.4113488947 2622202.3127178736 2485894.6206808183 3157305.3387731854 2405118.38684152 3410251.16359317 2824826.948673888 0.5731100253112776 0.7512529192090616 0.8633391362448503 0.9671804542333059 0.9282700711804182 0.8800166048570935 1.1176986754021796 0.8514214960922121 1.2072425056671554 1.0 21.429731058821186 5.237524471366955 0.6043639890176576 1.003588148349199 2.463017244024392e-17 0.6753952330247925 0.09672888565403757 3.536006679273674 0.6336245018940801 0.0412669997793416 2.816379584686218 172792.33417607352 -5.237524471366955 -1.003588148349199 KLTS(ph)DEEGEPSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KLTSDEEGEPSGK 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 KLT(0.423)S(0.577)DEEGEPSGK;KLT(0.185)S(0.815)DEEGEPSGK;KLT(0.107)S(0.893)DEEGEPSGK 171.52 1.5286e-05 1929460000.0 3542580.0 2502010.0 2151950.0 1926160.0 2227200.0 3091740.0 3186290.0 2973410.0 4816260.0 3090290.0 True False 3523507.1428976376 2585287.890353019 2454925.8549152883 2170011.6585063646 2510820.718351356 2878015.2909731176 3032156.9798901686 3195300.9528700416 3629357.2575775627 2893065.046469621 1.2179149401418883 0.8936155422802611 0.8485553610040709 0.7500735806664315 0.8678756536826873 0.994797989241594 1.0480777069254907 1.1044691016433372 1.2545024737713493 1.0 21.464167329910797 2.220247372745099 1.8594916917405684 1.1268643652089512 0.9037751836573039 0.3237106390237956 0.12730605943199733 0.38857988937986565 2.6841253164863326 0.06649788967565173 0.041721603638708665 166.05324720912552 -2.220247372745099 -0.22308918155164725 KLTS(ph)DEEGEPSGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 KLTSDEEGEPSGKR 14 2 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 KLT(0.016)S(0.984)DEEGEPSGKR;KLT(0.047)S(0.953)DEEGEPSGKR;KLT(0.024)S(0.976)DEEGEPSGKR;KLT(0.022)S(0.978)DEEGEPSGKR 183.77 7.146300000000002e-07 1283040000.0 946679.0 873762.0 710568.0 765038.0 755054.0 1072096.0 1084408.0 975884.0 1629490.0 1115026.0 True False 941582.1854499237 902844.6399697175 810609.7980322251 861891.7323588867 851205.6513443163 997984.5269625247 1031951.042199155 1048709.4195185439 1227924.0235473306 1043864.086058213 0.9020160747224085 0.8649063149389438 0.7765472620992345 0.8256742844880495 0.8154372419867382 0.9560483402883068 0.9885875527109631 1.0046417282911106 1.1763255771966976 1.0 19.99350245064339 2.2725729654826146 1.3028568089833183 1.0655199551952514 0.8332452062199822 0.7488292833743234 0.056662028786303754 0.2208614351869717 0.733809994435712 0.0347093972710417 0.020675379336312714 187.315176337246 -2.2725729654826146 -0.23227474897526923 KLTVDTPGAPETLAPVAAPEEDKDS(ph)EAEVEVESR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLTVDTPGAPETLAPVAAPEEDKDSEAEVEVESR 34 2 P12755 P12755 SKI Ski oncogene 1 KLTVDTPGAPETLAPVAAPEEDKDS(0.89)EAEVEVES(0.11)R;KLTVDTPGAPETLAPVAAPEEDKDS(0.971)EAEVEVES(0.029)R 95.842 0.00012722 165613000.0 133210.0 109321.0 108282.0 92040.0 106354.0 148795.0 146146.0 134018.0 202511.0 149729.0 True False 132492.81216102242 112959.68339905994 123527.16439598385 103692.25456292626 119897.5514904542 138509.15187575461 139076.3596480639 144019.10368961486 152604.87755837286 140173.16703055368 0.9452080948712732 0.8058581095940994 0.8812468678050095 0.7397439664063833 0.8553530895418808 0.988128860964978 0.992175339933279 1.0274370390605705 1.0886882332130616 1.0 17.09685067901386 2.672700912911143 2.9508321609466894 1.0253601062763487 0.8375774132409611 0.7197385452626951 0.05464670165875738 0.13871572317062966 2.38467331292756 0.018578921272005357 0.017793929242364715 470.6530884660498 -2.672700912911143 -0.18778269303538753 KLTVNPGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLTVNPGTK 9 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 92.943 0.011672 0.0 1195330.0 1420440.0 1293680.0 1176340.0 1220900.0 1543000.0 1533120.0 1280100.0 1903520.0 1517340.0 False True 1188894.4760936482 1467718.4867258887 1475818.8991318606 1325264.523387144 1376374.3781587505 1436336.041831307 1458957.128512853 1375627.5622160884 1434423.0018612053 1420502.0621398678 0.8369537136064963 1.0332392509975616 1.0389417505727958 0.9329550154899062 0.9689351496507913 1.0111467488245576 1.027071461138927 0.9684094088141064 1.0098000137362468 1.0 20.437969495210517 2.752374589112741 21.96779549087203 1.0006063097662086 0.9687894675651575 0.11790847636598156 0.05447288361456194 460.89122467901007 732932.8956541063 0.0165578522244769 0.01744026743555132 565.4244563219216 -2.752374589112741 -0.031816842201051077 KLVIIEGDLER ddPTM_BT-474_Trastuzumab_2h_R1 6 KLVIIEGDLER 11 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;;;;; 158.58 4.7578e-05 13518580000.0 8722050.0 9947400.0 9284600.0 9270800.0 8420460.0 9869100.0 10624800.0 9026500.0 12656700.0 10410900.0 False True 8675091.451910865 10278493.19566972 10591790.976810085 10444482.329443453 9492755.669023376 9186872.3463625 10110837.833322482 9700103.265638256 9537625.876090985 9746467.44878009 0.8900754552867949 1.0545865206738285 1.0867312728916771 1.0716172176567142 0.9739688475757984 0.9425848282612762 1.0373848665126357 0.9952429756334294 0.9785725880903399 1.0 23.21644798638186 3.2165278461245155 24.95180262178728 0.9895469015411383 1.0321678236168343 0.0970415353032208 0.05497726910365428 510.4481649835565 578074.2963206023 0.0162149060813578 0.019396566204792635 1646.3715251108288 -3.2165278461245155 0.04262092207569601 KLVIIESDLER ddPTM_BT-474_Trastuzumab_2h_R1 6 KLVIIESDLER 11 1 H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5 H7BYY1;P09493-3 TPM1 Tropomyosin alpha-1 chain 0 ;;;;; 184.34 7.9346e-06 2661740000.0 4386480.0 4979150.0 4774430.0 4451170.0 4287780.0 4967230.0 5262860.0 4226630.0 6303970.0 5511790.0 False True 4362863.679063742 5144877.997790268 5446628.243910499 5014687.665611252 4833803.367336826 4623857.081701701 5008275.35572242 4542042.592992264 4750441.0623702295 5160022.843319165 0.8455124737892337 0.9970649654102781 1.0555434363943583 0.971834392575203 0.9367794511986116 0.8960923666623581 0.9705917023617024 0.8802369157867163 0.9206240372599837 1.0 22.29894602176928 3.1896479118341525 4.357160906076417 0.9249228646643143 0.9761643577954299 0.055097451000910125 0.058660821939119444 0.4210002602527722 16.78000518812581 0.01709453906869655 0.02128895733599717 1547.5614820502203 -3.1896479118341525 0.05124149313111559 KLVILEGELER ddPTM_BT-474_Trastuzumab_2h_R1 5 KLVILEGELER 11 1 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain 0 ;;;; 127.71 0.00045037 2935230000.0 2924100.0 3282030.0 3014600.0 3019140.0 2854990.0 3397910.0 3431920.0 3018340.0 4150320.0 3686710.0 False True 2908356.9704980543 3391270.384520969 3439029.476627072 3401362.814440602 3218556.0536485007 3163020.479519776 3265904.91839245 3243583.8576199585 3127529.247438739 3451421.0114487736 0.842654941501106 0.9825722139581703 0.9964097295633892 0.9854963515485006 0.9325307005352774 0.9164400602035108 0.9462493586146272 0.939782149688666 0.9061569820269254 1.0 21.718759036746512 KLVIPSELGYGER ddPTM_BT-474_Trastuzumab_2h_R1 2 KLVIPSELGYGER 13 1 A0A494C1N0;P26885 A0A494C1N0 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 0 ; 170.11 4.3852e-05 3908400000.0 2275000.0 2964700.0 2807100.0 2894400.0 2844800.0 2986500.0 3286400.0 2711300.0 3666100.0 2789100.0 False True 2262751.6527762627 3063378.2473010058 3202315.2802494047 3260830.743230486 3207068.4175493624 2780050.284464808 3127424.276732831 2913630.9737024363 2762638.778223165 2611097.2501313523 0.8665903396215648 1.173214918420561 1.226425128397003 1.248835424673075 1.2282454885156153 1.0647057608922672 1.1977433152194943 1.1158645943025924 1.058037489061041 1.0 21.316224761049774 1.1528023453907448 2.0412149205221426 1.0019036258117748 1.1527363278123137 0.15828728757354282 0.10620510238508359 0.5165516721537424 3.9647613417038463 0.09867570611312024 0.028124702701127376 14.216816090244453 -1.1528023453907448 0.1508327020005389 KLVPLDYGEDDKNATK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLVPLDYGEDDKNATK 16 2 P49756 P49756 RBM25 RNA-binding protein 25 0 113.29 0.00037843 330630000.0 324950.0 304410.0 243470.0 241970.0 269300.0 358300.0 414210.0 320570.0 606480.0 442370.0 False True 323200.5053053389 314542.10283026926 277748.45972082316 272603.3771902569 303593.7587338449 333531.56434747705 394173.07986413885 344492.56122147647 457021.13041564147 414137.56786798884 0.7804182242369347 0.7595111557967453 0.670667143651548 0.6582435363051932 0.7330746647708593 0.8053641838496384 0.9517926178331788 0.8318312269880511 1.1035490761401348 1.0 18.659750554996524 2.0093247651539965 0.922859197868052 1.0187918491416659 0.7124642520746196 0.7522594500555788 0.0687665266126954 0.2929674530726804 0.46041398653242827 0.057600392353918596 0.027977184022718014 102.17032271712597 -2.0093247651539965 -0.30632759706704626 KLVPLLLEDGGEAPAALEAALEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KLVPLLLEDGGEAPAALEAALEEK 24 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 136.64 3.1038e-05 59666000.0 69902.0 59100.0 63562.0 51364.0 61403.0 76196.0 69185.0 72144.0 105250.0 78593.0 False True 69525.65539884231 61067.10777329556 72510.97710919182 57866.6771335304 69222.30808590532 70928.74986609093 65838.25723763417 77527.75161980905 79312.54777774418 73577.12745314749 0.9449357131143088 0.8299740678539255 0.9855097585233322 0.7864764382161942 0.9408128651119841 0.9640054228979924 0.8948196201266313 1.0536936450689411 1.0779511313247299 1.0 16.16696973226703 1.720993246437569 5.783630261490003 1.0492854199660964 0.9055055328425925 0.5215672083516686 0.060035380692207235 0.10641189371478797 8.8927532765224 0.02905328606531981 0.014833376869814925 52.6009086542758 -1.720993246437569 -0.14377988712350387 KLVWVPSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KLVWVPSDK 9 1 P35579;Q5BKV1;B1AH99 P35579 MYH9 Myosin-9 0 ; 115.18 0.003288800000000001 0.0 14078000.0 13348500.0 12197300.0 11775100.0 11563500.0 14158600.0 15228500.0 13970200.0 19109800.0 14606400.0 False True 14002205.61221283 13792796.753161358 13914573.81916786 13265826.452671787 13036043.182765739 13179849.307759386 14491839.276480643 15012727.263238212 14400445.84820083 13674207.046831802 1.0239866607443993 1.0086725106562602 1.0175781141467906 0.9701349706961887 0.9533308321367037 0.9638474291504198 1.0597937581936994 1.0978864962203811 1.0531101217702632 1.0 23.704953839256998 2.2032444144477914 10.711901727512839 1.0648683824080478 0.9892090671833172 0.469012891787138 0.031857733667781905 0.4010070534271975 119.03054346024028 0.012465406784641732 0.009242861892028928 159.67775369611888 -2.2032444144477914 -0.07565931522473057 KLWGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KLWGDR 6 1 P13639 P13639 EEF2 Elongation factor 2 0 97.071 0.066524 10385000000.0 19265000.0 21249000.0 18918000.0 19646000.0 19847000.0 21475000.0 21635000.0 20091000.0 25043000.0 21778000.0 False True 19161279.38054274 21956260.11970825 21581489.961796254 22133181.585650224 22374397.807614625 19990483.79671244 20588432.396273986 21590292.44003085 18871488.209007584 20388109.394916166 0.9398262001341164 1.0769149652092365 1.0585331647856304 1.0855926440717056 1.0974238647745214 0.9804971814452361 1.009825481974693 1.058964910469553 0.925612465749926 1.0 24.281224663546453 2.725751045046991 24.919064732633903 1.00482503502923 1.0553285178691132 0.22107811804562416 0.051333083645092766 1281.0829241962954 2492147.9287774707 0.01657895169553099 0.01572714172525008 531.8033209573701 -2.725751045046991 0.05050348283988315 KLYELIITR ddPTM_BT-474_Trastuzumab_2h_R1 2 KLYELIITR 9 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 141.95 0.00016913 829520000.0 615230.0 645540.0 690570.0 523790.0 454590.0 568980.0 614910.0 460630.0 839510.0 650230.0 False True 611917.6700384796 667026.4086628299 787796.2534579561 590101.760294601 512479.3419339714 529647.7518348515 585164.4541156851 495004.5496317457 632624.0093576635 608731.7647100902 1.0052336768230037 1.0957640907411865 1.2941599225286784 0.9693953798774377 0.8418804006031141 0.8700839721861685 0.961284572350797 0.8131735163639647 1.0392492162109397 1.0 19.21544712461929 3.494575422892888 22.74258521093144 0.9055514474895199 1.128732798365906 0.5010789152830323 0.09351605882968744 164.69311266843465 214592.29288530877 0.024303459625041657 0.03665234703658778 3123.0247274292933 -3.494575422892888 0.22318135087638602 KLYGDADYLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 KLYGDADYLEER 12 1 P17812;B4E1E0;P17812-2;A0A3B3IRI2 P17812 CTPS1 CTP synthase 1;CTP synthase 0 ; 138.21 0.00012572 600890000.0 369620.0 431630.0 415850.0 410770.0 408460.0 467210.0 427520.0 416720.0 592400.0 514140.0 False True 367630.0069886423 445996.5436241554 474398.0653670037 462773.4398828027 460474.959867903 434912.87239404063 406839.2243150018 447817.7624612838 446410.9577533076 481327.1450225998 0.7637840724137446 0.9265975298426489 0.9856042200668513 0.9614530255946278 0.956677728712521 0.9035702159985599 0.8452447125040069 0.9303812741337442 0.9274585120944036 1.0 18.876658262554006 4.736614920984078 6.073078424609924 0.9329866199904383 0.7595557225235788 0.6103507480173673 0.041516939148718214 0.09061719815354244 16.850258973230456 0.010490654042682209 0.06520855976710177 54527.41645112547 -4.736614920984078 -0.17343089746685947 KLYGDVPFIEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KLYGDVPFIEER 12 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 0 ;; 121.42 0.00060389 799570000.0 1146710.0 1317000.0 1240940.0 1231860.0 1200580.0 1299470.0 1365820.0 1200590.0 1683630.0 1464190.0 False True 1140536.2407714585 1360835.5488566877 1415653.5655561588 1387813.3496945475 1353466.7466048251 1209640.6975233483 1299750.068660919 1290184.1222724905 1268721.9459861615 1370744.1406438746 0.8320562583150773 0.9927713776091485 1.0327628064061531 1.0124525128684154 0.9873956097810246 0.8824700844281181 0.9482076414715822 0.9412289894352254 0.9255716718878034 1.0 20.38652787605603 KMANS(ph)SPVLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMANSSPVLSK 11 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 KMANS(0.625)S(0.375)PVLSK 67.93 0.019561 0.0 244700.0 293680.0 232070.0 251910.0 237060.0 292980.0 305390.0 304590.0 462030.0 343190.0 True False 243382.56238872607 303454.9612666913 264743.4388113996 283801.7801710861 267248.18583529646 272726.9822007366 290617.1189969086 327320.052476681 348168.89738480916 321287.32038025896 0.7575230858804859 0.9444971588282344 0.8240083626644932 0.8833270476880104 0.8318043348831675 0.8488569728738474 0.9045396458626169 1.0187767512557981 1.0836683407634469 1.0 18.29350452033957 1.7977541777715196 2.4748853057694427 1.0458918744597672 0.8529222512570839 0.7461768104764237 0.04846008255560999 0.12293959150970078 1.4530913207440126 0.026851257679009387 0.012532842145540974 62.77029616682222 -1.7977541777715196 -0.1929696232026833 KMANSS(ph)PVLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KMANSSPVLSK 11 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 KMANS(0.017)S(0.983)PVLSK;KMANS(0.023)S(0.977)PVLSK 140.77 2.3545e-05 4154300000.0 6154300.0 6232600.0 5754300.0 5421700.0 5388000.0 6946100.0 7174500.0 6382300.0 9997600.0 7152900.0 True False 6121165.932607006 6440048.3233137345 6564455.422727786 6108086.664100581 6074129.862821976 6465932.456360618 6827442.0257484475 6858579.634662716 7533825.440976496 6696395.798094217 0.9140985863393977 0.9617185897444356 0.9802968075148752 0.9121454060166115 0.9070744988745533 0.9655839725305382 1.0195696657732696 1.0242195714618088 1.1250567720505127 1.0 22.674953371864778 2.121186950815657 1.7842162785296607 1.0544764399272173 0.9375358647039803 0.6606195479347106 0.03673411846576751 0.21935169837991172 1.3472848232942363 0.020649866235499085 0.011580868115065144 132.18645349699102 -2.121186950815657 -0.11694057522323698 KMAQELYMEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMAQELYMEQK 11 1 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 111.39 0.0015693 0.0 313130.0 347230.0 375370.0 373530.0 386430.0 399570.0 382170.0 339400.0 605930.0 405910.0 False True 311444.14287201327 358787.34064503264 428218.83322547044 420818.8597011059 435639.5699499436 371948.66638660704 363682.97706882533 364727.75143827946 456606.6705460197 380004.47628296557 0.8195801952609113 0.9441660902380165 1.1268783921024201 1.1074050069550982 1.146406416606393 0.9788007499933767 0.9570491922258657 0.9597985660744941 1.201582347166914 1.0 18.535656887396193 4.513158184977725 3.8153962991789503 1.0499984504313384 0.8323870155316407 0.46012237667669564 0.08163585202330378 0.22105758026873282 6.546809114485918 0.02144884388407903 0.09493240492058595 32595.540354451812 -4.513158184977725 -0.2176114348996977 KMDLIDLEDETIDAEVMNSLAVTMDDFR ddPTM_BT-474_Trastuzumab_2h_R1 20 KMDLIDLEDETIDAEVMNSLAVTMDDFR 28 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;;;;;;;;;;;;; 293.0 1.961799999999999e-71 5287882500.0 3628456.5 3421147.3 3255077.2 3238976.1 3281139.9 4034273.3 3936581.9 3810961.5 5138521.0 4117011.5 False True 3608921.2933634142 3535018.119753283 3713363.7761217835 3649030.142160295 3698973.617425149 3755393.482428856 3746154.394293776 4095354.7988003893 3872201.352203725 3854260.301319119 0.9363460200465086 0.917171608400041 0.9634439518397048 0.9467523874584745 0.9597103797476202 0.9743486917953036 0.9719515812182317 1.0625527283143683 1.0046548622775855 1.0 21.878022578098665 2.169176990178563 1.7201284322978427 1.0274132292335374 0.9450632204413841 0.6674049587589546 0.02245917463578152 0.19536065272629075 1.1296169002858871 0.012469287113079918 0.007243930327244597 147.6308057822186 -2.169176990178563 -0.08235000879215326 KMEDSVGCLETAEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KMEDSVGCLETAEEVKR 17 2 P35579 P35579 MYH9 Myosin-9 0 93.029 0.0017789 1120700000.0 179880.0 193290.0 181030.0 186160.0 151960.0 210620.0 239190.0 211990.0 338310.0 262580.0 False True 178911.5460665467 199723.54080372778 206517.45045903214 209727.83691258516 171311.20526251427 196060.33514615026 227619.46590546693 227809.77026340849 254938.03362174498 245821.91959395172 0.7278095719131659 0.8124724643499279 0.8401099901919136 0.8531697956757204 0.696891495866137 0.7975705969182993 0.9259526826633215 0.9267268380285384 1.037084219514888 1.0 17.90725403896573 1.902567920188745 1.521957734331803 1.0049761748647312 0.7897655058870596 0.7649214364949136 0.05094530357834423 0.19770297517232407 0.8551915933933044 0.037221237631259084 0.016533647172029143 79.9038895198461 -1.902567920188745 -0.2152106689776716 KMEEEQR ddPTM_BT-474_Trastuzumab_2h_R1 6 KMEEEQR 7 1 Q9BQ61;K7EN60;K7ELS0;K7ERU7 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 ;;;;; 109.71 0.01117 1395863000.0 3085070.0 3018690.0 2884400.0 2690260.0 2628370.0 2754140.0 3140010.0 2906880.0 3937010.0 3143920.0 False True 3068460.3259034962 3119165.2718133577 3290498.448345761 3030846.640161427 2963077.339930472 2563752.784348204 2988115.7202969375 3123806.14643755 2966786.6387311784 2943272.33395467 1.0425336080880494 1.0597610135594733 1.11797281222854 1.0297540615581058 1.0067289070560423 0.8710552383385698 1.0152358943564066 1.0613377873328864 1.0079891705926218 1.0 21.488989606902685 3.4631747300714872 4.061182141540605 0.9976528717242715 1.0727369274274938 0.3460684912899683 0.04879087434492364 0.2773596960305966 10.519598241056253 0.015158786057461958 0.022076240890574365 2905.1912674591654 -3.4631747300714872 0.0750840557032223 KMEENEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KMEENEK 7 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 107.57 0.01194 439960000.0 745660.0 611283.0 606037.0 501062.0 566635.0 523408.0 800340.0 734190.0 1187650.0 889240.0 False True 741645.4494106149 631629.1851266238 691361.7418319643 564496.3978249556 638792.6085412265 487226.03692990297 761624.4966042957 788978.9859412787 894969.5711946605 832487.9418833329 0.8908783083786108 0.7587247254268844 0.83047658356216 0.6780835726555973 0.7673295628716128 0.5852649779258714 0.9148775114763545 0.9477362328592723 1.07505409528212 1.0 19.667069850150916 1.8911457616575162 2.6435944152729673 1.0113938142905858 0.7536719462096438 0.6405291951442103 0.08552964474764514 0.17317376646277974 2.177862835511099 0.04652496438026178 0.023848371760107588 77.82977262000043 -1.8911457616575162 -0.257721868080942 KMEES(ph)DEEAVQAK ddPTM_BT-474_Trastuzumab_2h_R1 4 KMEESDEEAVQAK 13 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK 175.33 1.1305e-05 2209250000.0 2159030.0 1710510.0 1584060.0 1504820.0 1557810.0 2198060.0 2120430.0 2070830.0 3507680.0 2393230.0 True False 2147406.0223707827 1767443.2913248711 1807081.879103657 1695330.0577073286 1756187.8696367284 2046113.2858766823 2017856.7000707795 2225365.850061671 2643259.2645039223 2240492.0124527127 0.9584528801867823 0.7888639109183945 0.806555823033445 0.7566775727316322 0.7838402725275478 0.9132428388516145 0.9006310617736996 0.993248731837931 1.1797673233435417 1.0 21.095384152491494 1.819154114727767 1.4326529015945055 1.0864748430707805 0.8205746019992307 0.6705161151394956 0.07146659497262316 0.22535186847245353 0.8728456314016536 0.05355042828506699 0.02209396262279106 65.94078527011374 -1.819154114727767 -0.26590024107154975 KMEESK ddPTM_BT-474_Trastuzumab_2h_R1 2 KMEESK 6 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ; 87.323 0.08429400000000001 1186120000.0 1358820.0 1115480.0 978790.0 945760.0 1012830.0 912440.0 1187070.0 1249720.0 1939590.0 1520730.0 False True 1351504.2640990934 1152608.0774781012 1116595.124204807 1065493.119029042 1141807.896986262 849365.1704527255 1129646.8890522295 1342980.4523495769 1461604.033674441 1423675.7094375428 0.9493062606462799 0.8096001567193042 0.78430440078657 0.7484099868852793 0.8020140327022651 0.5966001701246189 0.79347205375761 0.9433190743137378 1.026641126195714 1.0 20.44118913018827 1.6442354014874894 3.2801633233425216 1.0061529406260077 0.7759409205284586 0.5842835959888156 0.08105432911250594 0.1434438873184098 3.6465348809277938 0.05169550703812102 0.02242606985750095 44.07937230498329 -1.6442354014874894 -0.23021202009754904 KMEEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 KMEEVK 6 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;; 105.95 0.052177 2191150000.0 2023900.0 1874500.0 1604000.0 1548650.0 1548230.0 1872090.0 2304170.0 2105930.0 3471070.0 2301550.0 False True 2013003.5472764277 1936891.5993408198 1829829.2577820679 1744708.9312133386 1745387.9134218378 1742676.8247258374 2192708.494315817 2263085.1902958592 2615671.308455055 2154663.1085439115 0.9342544267334604 0.8989301351382684 0.8492414663462812 0.8097362990506606 0.8100514212643407 0.8087931787645039 1.0176572317134143 1.0503197373742654 1.2139583668941574 1.0 21.03903088428696 2.041017422584386 2.730226943460727 1.0915340994711762 0.8500759497379069 0.7371441614131862 0.06441956106026554 0.14049780218130606 2.03422448233885 0.03201904611568224 0.019082213796926966 109.90499291155619 -2.041017422584386 -0.2414581497332693 KMEIYRPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KMEIYRPHK 9 2 Q92769;Q92769-3;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19;Q13547;Q5TEE2 Q92769;Q13547 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase 1 0 ; 159.4 3.9685e-05 2551200000.0 3742400.0 3829400.0 3760900.0 3490700.0 3380100.0 4193700.0 4318900.0 3842000.0 5544100.0 4572200.0 False True 3722251.3342197267 3956859.2640788164 4290402.029671186 3932622.262090464 3810535.699577682 3903799.3899079366 4109978.3071998022 4128709.5492806993 4177830.8421338843 4280398.281542643 0.8696039689274518 0.9244138054024206 1.002337106846267 0.9187514813862505 0.8902292377812039 0.912017792068877 0.9601859539385148 0.9645620051489051 0.9760378748279018 1.0 22.029313611762056 1.8069619226474025 1.582423156546305 0.9857917873394355 0.9226920639603011 0.4057005218675247 0.03331239523081188 0.4355536060032403 2.0845425150775796 0.026025004981676328 0.010805993977695482 64.11533601379087 -1.8069619226474025 -0.06309972337913439 KMELSLNIPVNHGPQEESCGSSQLHENSGS(ph)PETSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KMELSLNIPVNHGPQEESCGSSQLHENSGSPETSR 35 1 O43353-2;O43353 O43353-2 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 1 KMELSLNIPVNHGPQEESCGSSQLHENS(0.04)GS(0.958)PET(0.001)S(0.001)R 128.23 1.7267e-08 238780000.0 38166.0 45413.0 49712.0 46864.0 53986.0 53604.0 52687.0 43484.0 51636.0 51972.0 True False 37960.51849664125 46924.54425226181 56711.01749554999 52796.97759492581 60860.797099908465 49898.48165024326 50138.32852611452 46728.99688727791 38910.99968695108 48655.10246453219 0.7801960446864354 0.9644321330217752 1.1655718439168898 1.0851272512150787 1.2508615544335517 1.025554959762287 1.0304844915836637 0.9604130814716023 0.7997311220404025 1.0 15.570303488035247 -0.9139842333348044 5.787237909604607 0.999999990987212 1.017372906382221 0.0 0.13819455196067643 1.6409847520287354e-08 3.0127434439887027e-09 0.1376557063943803 0.032445744231714174 0.12190338540341522 0.9139842333348044 0.01737291539500896 KMENCLGESR ddPTM_BT-474_Trastuzumab_2h_R1 4 KMENCLGESR 10 1 Q9UHB6;Q9UHB6-4;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;;; 149.49 3.727800000000001e-05 1078257000.0 1788760.0 1948760.0 1838160.0 1743990.0 1700760.0 2027320.0 1992020.0 1723700.0 2539640.0 2053680.0 False True 1779129.5149099187 2013623.2985497015 2096956.9504268619 1964778.9551846753 1917341.7048056964 1887176.1401979534 1895658.382344616 1852331.2467712474 1913779.7514324985 1922612.3841560937 0.9253708805640742 1.0473371102483333 1.0906810794039978 1.0219319148134427 0.9972585845208155 0.981568700872748 0.985980532512117 0.9634449783201124 0.9954059212369673 1.0 20.874636501100788 3.127568637905469 3.123461082896282 0.9819697696930432 1.0283873671346644 0.14483253683089037 0.03967550968593204 0.3944059255560133 7.682568448735282 0.012225461972684294 0.015142560950563634 1341.4319247490916 -3.127568637905469 0.04641759744162122 KMESDFEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMESDFEQK 9 1 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 74.611 0.04821 0.0 447090.0 398370.0 323600.0 297720.0 317600.0 446570.0 403810.0 361410.0 616050.0 462660.0 False True 444682.9171163692 411629.50463025004 369160.06721837755 335411.3214740807 358044.4774373164 415699.6670127071 384276.16759599734 388380.24940279435 464232.7321470724 433132.6426968454 1.02666682969819 0.9503543812059309 0.852302576226648 0.7743847690298397 0.8266393297166381 0.9597514156966003 0.8872020478607906 0.8966773942148392 1.0718026913339669 1.0 18.72444937850296 1.2486680955411493 24.656634181472064 1.0359013363486032 0.8925370973271486 0.38921895075596846 0.06956731708011712 157.07115791119753 383173.8543523877 0.050715981416161376 0.01803270602112998 17.72834095394409 -1.2486680955411493 -0.14336423902145456 KMFEWQAECLLLGQVLEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KMFEWQAECLLLGQVLEGK 19 1 A0A087WXL3;O75417 A0A087WXL3 POLQ DNA polymerase theta 0 ; 47.754 0.062397 936400000.0 2183640.0 1440940.0 1055730.0 864540.0 887000.0 1373610.0 1302600.0 553250.0 2429100.0 1149430.0 False True 2171883.5248652124 1488900.8168333753 1204367.6074303386 973990.6753567172 999954.1923391045 1278655.5738301373 1239588.2615847709 594536.3243465755 1830480.853272385 1076072.3933234664 2.0183433181082884 1.383643727012531 1.1192254488665307 0.9051348974287239 0.9292629367163024 1.188261665073471 1.151956196698145 0.5525058797487972 1.7010759356244762 1.0 20.037343708534234 4.711330313452022 1.6805840814183521 1.019293702829636 2.3370576763672677 0.5236322198800253 0.2745805811685643 0.6616019088395292 1.9060604670002015 0.07021640616686961 1.3867806831605776 51443.47689638343 -4.711330313452022 1.3177639735376316 KMGAPESGLAEYLFDKHTLGDSDNES(ph) ddPTM_BT-474_Trastuzumab_2h_R1 1 KMGAPESGLAEYLFDKHTLGDSDNES 26 2 G3V192;P02794;G3V1D1 G3V192 FTH1 Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed 1 KMGAPESGLAEYLFDKHT(0.079)LGDS(0.418)DNES(0.504) 83.693 0.007519899999999999 71711000.0 52984.0 37140.0 63171.0 53422.0 58729.0 76849.0 63338.0 86707.0 52157.0 65585.0 True False 52698.74003107578 38376.1824483959 72064.92770782481 60185.219722518916 66207.79003594488 71536.60951308746 60274.098965343306 93177.51662922479 39303.606217993394 61399.30914985656 0.8582953254808551 0.6250262906823855 1.173709097148582 0.9802263340720262 1.0783149021164442 1.165104469473572 0.981673895030855 1.5175662058641008 0.6401310822906093 1.0 15.905934802381335 4.234091663508172 24.999983798500935 1.1033416880341305 0.7416607717037237 0.25538985371343614 0.21526399613113822 115.58940233591105 646639.2677462392 0.05180503064210464 0.11827214026998396 17143.190987057646 -4.234091663508172 -0.3616809163304068 KMGIDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KMGIDHK 7 1 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ; 67.98100000000001 0.041344 837600000.0 1000770.0 1003950.0 861040.0 899130.0 973340.0 1029990.0 1139470.0 973960.0 1552900.0 1175150.0 False True 995381.9655159997 1037365.8688494097 982266.9477061544 1012959.7658101247 1097289.07956183 958789.2156356628 1084349.4829018868 1046641.8408686694 1170208.6027939105 1100150.9209034669 0.9047685609339592 0.9429305099317676 0.8928474530562556 0.9207461872397116 0.9973986829558924 0.8715069881942062 0.9856370269738959 0.9513620549525563 1.0636800647613973 1.0 20.069270018441202 1.5411499533934976 1.7937707693448022 1.0278060848770665 0.927073711348862 0.4818927330176118 0.04022209171475463 0.2672357633147139 1.7143315886803723 0.031242668461931918 0.010614736903641377 34.765617960367265 -1.5411499533934976 -0.10073237352820452 KMIDQVFGVLES(ph)PELSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KMIDQVFGVLESPELSR 17 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 KMIDQVFGVLES(0.996)PELS(0.004)R 69.704 0.020944 186330000.0 143220.0 137660.0 132690.0 149210.0 161050.0 153980.0 144240.0 118810.0 207930.0 171600.0 True False 142448.91943323784 142241.92988277288 151371.59863784458 168099.9707011539 181558.76288186313 143335.72502993158 137262.56014969083 127676.20550495564 156688.43761925292 160648.34108584846 0.886712669862647 0.885424206196817 0.9422543526730444 1.0463847280646577 1.1301626998117609 0.892232836399691 0.8544287430664438 0.794755829048537 0.9753504864113136 1.0 17.29354655752079 2.507494258848057 24.92708056301778 0.8771481257191354 0.9784637447135656 0.12148956888348839 0.08834733502022628 1037.9256062527193 851822.9462449009 0.030509446499930853 0.02872947063571686 321.7320001082063 -2.507494258848057 0.1013156189944302 KMKDTDSEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KMKDTDSEEEIR 12 2 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 80.52199999999998 0.096591 125880000.0 111520.0 141590.0 110550.0 138320.0 126650.0 174050.0 172400.0 150250.0 291280.0 176880.0 False True 110919.58871103686 146302.73755703768 126114.47908217447 155831.2978177308 142778.12678663738 162018.33316962997 164060.3533680442 161462.41795404078 219497.94695203146 165591.3669654134 0.6698391996136146 0.8835166967828432 0.7616005676703884 0.9410593116866947 0.8622317056930814 0.9784225840920213 0.9907542668109685 0.9750654331379786 1.3255397969984593 1.0 17.337267934950113 2.9167675641541897 0.5127896893766354 1.1119791760714621 0.7343010175738348 0.5896498631779534 0.1055628392660651 0.7749963643632233 0.4223597113812908 0.08676462717019907 0.13159981722851077 825.5959696144928 -2.9167675641541897 -0.3776781584976273 KMLEDPQER ddPTM_BT-474_Trastuzumab_2h_R1 2 KMLEDPQER 9 1 Q9BUQ8;H0YIL9 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 ; 88.596 0.020327 280800000.0 233090.0 272560.0 272170.0 269570.0 239100.0 295580.0 292620.0 234360.0 336260.0 295180.0 False True 231835.06933873333 281631.99483400094 310489.1702559509 303697.53436036484 269547.9677432688 275147.25032047764 278464.8526830458 251849.13325596665 253393.22865315227 276341.3596836875 0.8389445199375944 1.0191452888426449 1.1235711172998153 1.098994137931399 0.9754166660097688 0.9956788612295434 1.0076843111787137 0.9113696680954464 0.9169573057872963 1.0 18.07609197920394 1.7867098325991768 8.154276252951744 0.9351925986755331 1.0151792558820492 0.1310644793363176 0.07547032194715596 0.45802658064267415 67.80769327383868 0.03561044702877369 0.020636924027784713 61.19413955627751 -1.7867098325991768 0.0799866572065161 KMLGEDS(ph)DEEEEMDTSER ddPTM_BT-474_Trastuzumab_2h_R1 1 KMLGEDSDEEEEMDTSER 18 1 A0A087X0M4;A0A087WWF4;Q9BWU0;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 KMLGEDS(1)DEEEEMDTSER 299.48 1.0845999999999996e-49 792140000.0 574720.0 436120.0 429850.0 365760.0 447480.0 582910.0 619560.0 520880.0 800720.0 659440.0 True False 571625.771377395 450635.9905598928 490369.14367682184 412065.1784977825 504463.925578243 542614.8037225445 589589.5158509599 559750.7105750461 603393.2850982937 617353.9746250124 0.9259287133035903 0.7299475002709978 0.794307907347122 0.6674698721233235 0.8171388641089741 0.8789362764727232 0.9550266785098178 0.9066932968481249 0.9773862482456704 1.0 19.235738404660083 2.605414885745331 2.24299174203236 0.9475537690638162 0.775042969730565 0.6039406521173224 0.06574940646008366 0.21275554773655547 2.116625880428666 0.02401426749643997 0.021825386045129593 403.10193764946496 -2.605414885745331 -0.1725107993332512 KMPFTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KMPFTEK 7 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 128.69 0.005986399999999999 4739000000.0 3643800.0 4026300.0 3811700.0 3460500.0 3471500.0 4207400.0 4307100.0 4169600.0 5521400.0 4243700.0 False True 3624182.185664241 4160312.9615502483 4348354.228109673 3898598.9451869414 3913574.9478074363 3916552.3411542703 4098749.1182801826 4480756.724799784 4160724.952969469 3972863.432785642 0.9122342730827481 1.0471824747907765 1.094513894493662 0.98130706256202 0.9850766365415601 0.9858260691352564 1.0316863863116166 1.1278406118425328 1.0472861761704466 1.0 21.921747770948215 1.9901719662759656 22.447601640454888 1.0743759750043345 1.006000553778598 0.1667045077220256 0.05376000037311438 169.90597381511535 388071.3109211318 0.021095513398037738 0.014666984188129917 97.76242512509441 -1.9901719662759656 -0.06837542122573637 KMPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KMPKPR 6 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 109.94 0.016382 1719100000.0 963820.0 1076400.0 976000.0 921890.0 965330.0 942270.0 987000.0 890380.0 1212900.0 875990.0 False True 958630.9002104683 1112227.3233024594 1113412.3164559223 1038601.17947649 1088259.0535408193 877133.0927649939 939255.0392938494 956824.676858028 913997.0470273262 820083.5682272284 1.1689429435621266 1.3562365670937135 1.3576815334354053 1.266457736400731 1.3270099483803888 1.0695655013074938 1.1453162527377954 1.1667404566176012 1.1145169619763389 1.0 19.645411405294308 2.742750482233318 24.99153048606217 1.1179579447277466 1.3005201177810837 0.6769703615893046 0.0670389615844106 220.1646445044864 1313230.3190742538 0.02027659415505448 0.02082607107735665 553.0322810288503 -2.742750482233318 0.1825621730533371 KMPLDLS(ph)PLATPIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 KMPLDLSPLATPIIR 15 1 B8ZZU6;E9PBF9;P15336-5;P15336;E9PEK8;H7C2N6;P15336-3;P15336-7;P15336-4;C9JCI8 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 KMPLDLS(1)PLATPIIR;KMPLDLS(1)PLATPIIR 163.79 9.3012e-07 901150000.0 1122730.0 1439460.0 1235530.0 1311160.0 1244150.0 1547890.0 1534560.0 1334320.0 1990470.0 1550280.0 True False 1116685.3464270283 1487371.5559280547 1409481.8845807235 1477152.7215637348 1402585.1278452042 1440888.0076411297 1460327.470211521 1433893.7339396703 1499945.3394315096 1451339.803138518 0.7694168822574834 1.0248265449012135 0.9711591189966148 1.0177855787937438 0.9664071258929976 0.9927985193579157 1.0061926690452279 0.9879793352589651 1.0334901145740525 1.0 20.4689539074119 4.742671065972872 24.997706590918206 0.9979207285129637 0.7694167927994846 0.9176905054769041 0.020714311179724512 96.35573348471013 585965.6119565574 0.0045039793234429686 0.034680799786420906 55293.116129996255 -4.742671065972872 -0.22850393571347904 KMQEINNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMQEINNQK 9 1 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 0 44.98 0.074048 17630000.0 20385.0 29661.0 30461.0 25201.0 32208.0 25351.0 27962.0 27430.0 17929.0 37668.0 False True 20275.24942498642 30648.248454546865 34749.64402824163 28391.444016083275 36309.497888227546 23598.545039835037 26609.371234786864 29476.965886717724 13510.638186291455 35263.99599080272 0.5749560948871039 0.8691087777613263 0.9854142462273634 0.8051113669445773 1.0296478566325127 0.6691965665487775 0.7545761757041632 0.835894091367458 0.3831283950297406 1.0 15.105908344549794 2.693814750359552 24.999286295175644 0.7305547324429345 0.8584641970194001 0.10225357103427324 0.18371198758735907 1041.0832354027707 581646.8547035513 0.05716069879018228 0.05389186308490573 494.0998822133317 -2.693814750359552 0.12790946457646568 KMQQNIQELEEQLEEEESAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KMQQNIQELEEQLEEEESAR 20 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 275.68 2.5772e-44 476690000.0 470710.0 503590.0 478090.0 528500.0 508380.0 573310.0 601510.0 511030.0 673770.0 630940.0 False True 468175.7496607969 520351.68872341706 545400.9163672247 595408.0458116746 573119.1795956627 533678.429126576 572412.6633086561 549165.6535577597 507728.411555447 590672.8690250888 0.7926142780749781 0.8809473331359581 0.9233552867722095 1.0080165808096133 0.9702818762297334 0.9035092978071219 0.9690857551209836 0.9297289284069586 0.8595763208042 1.0 19.171999821589782 4.574528274495725 1.9761917297225677 0.945610015864731 0.7750645661890221 0.5648725220291242 0.042097326251642746 0.3898374316850651 2.11294383840793 0.010884975931024346 0.1067911836473135 37542.93957941635 -4.574528274495725 -0.17054544967570895 KMS(ph)DDEDDDEEEYGKEEHEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KMSDDEDDDEEEYGKEEHEK 20 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK 302.8 2.5743e-55 4206900000.0 3621730.0 1739420.0 1545790.0 1261010.0 1483030.0 2563620.0 2473870.0 2373270.0 5076240.0 2515190.0 True False 3602231.0080920323 1797315.5431984058 1763423.7957524606 1420653.7367057302 1671885.0798925166 2386402.98351236 2354199.456998858 2550375.4586208733 3825268.6701310803 2354668.420837503 1.5298251661313738 0.7632987843609593 0.7489053576066774 0.6033349426754683 0.7100299409875571 1.013477295738977 0.9998008365702387 1.0831144784766602 1.62454663946719 1.0 21.167092486362595 1.6710481621902367 2.0748853141880357 1.309241873432818 0.8692235489773167 0.23288670226097896 0.2821518000515567 0.3805381411396024 3.488394828210061 0.20174865058568137 0.07913034717940745 46.88653752795687 -1.6710481621902367 -0.44001832445550126 KMS(ph)GGSTMSSGGGNTNNSNSK ddPTM_BT-474_Trastuzumab_2h_R1 10 KMSGGSTMSSGGGNTNNSNSK 21 1 Q86U70-2;Q86U70;A0A6E1WJ75;Q86U70-3 Q86U70-2 LDB1 LIM domain-binding protein 1 1 KMS(0.636)GGS(0.163)T(0.163)MS(0.035)S(0.004)GGGNTNNSNSK;KMS(0.939)GGS(0.04)T(0.016)MS(0.003)S(0.003)GGGNTNNSNSK;KMS(0.719)GGS(0.136)T(0.136)MS(0.007)S(0.001)GGGNTNNSNSK;KMS(0.592)GGS(0.181)T(0.181)MS(0.04)S(0.007)GGGNTNNSNSK;KMS(0.991)GGS(0.008)T(0.001)MSSGGGNTNNSNSK;KMS(0.905)GGS(0.072)T(0.023)MSSGGGNTNNSNSK;KMS(0.981)GGS(0.018)T(0.001)MSSGGGNTNNSNSK;KMS(0.996)GGS(0.003)T(0.001)MSSGGGNTNNSNSK;KMS(0.965)GGS(0.028)T(0.007)MSSGGGNTNNSNSK;KMS(0.995)GGS(0.004)T(0.001)MSSGGGNTNNSNSK 276.78 4.960199999999999e-45 4920675000.0 2768965.0 2274528.0 2145699.0 2015203.0 2198276.0 2920414.0 2870995.0 2584757.0 3514083.0 3009049.0 True False 2754057.2001009327 2350234.2894987892 2447794.768449957 2270327.49317658 2478213.418397335 2718532.654095094 2732114.0035840366 2777644.6924700974 2648084.33094973 2817008.9166435413 0.9776529935100045 0.8343013313209839 0.8689339795794818 0.8059355012200917 0.8797321881927586 0.96504226097169 0.9698634560373857 0.9860262337329248 0.9400340607032637 1.0 21.425732699589044 2.7492264258654284 4.247392451693575 0.9732683333407548 0.8660701553961765 0.56063607251911 0.043721834946595525 0.14766125575182004 6.6420420928374435 0.013688381102426555 0.013827474751938665 561.340562976497 -2.7492264258654284 -0.10719817794457831 KMS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 4 KMSPLR 6 1 Q86SQ7-3;Q86SQ7-4;Q86SQ7;Q86SQ7-2 Q86SQ7-3 SDCCAG8 Serologically defined colon cancer antigen 8 1 KMS(1)PLR;KMS(1)PLR;KMS(1)PLR;KMS(1)PLR 85.73100000000002 0.033309 1717020000.0 2019090.0 2182100.0 2116850.0 1829640.0 1371390.0 2051380.0 2221220.0 1727400.0 3330410.0 1985270.0 True False 2008219.4437819875 2254729.8793926965 2414884.080009959 2061272.2364027866 1546028.3876346375 1909572.929029104 2113771.102715585 1856307.3595594666 2509675.0807076236 1858568.368924839 1.0805195425464602 1.213154122867717 1.2993248569095914 1.1090645202335008 0.8318383189363099 1.027442929169063 1.1373114586784763 0.9987834672088601 1.3503270165732146 1.0 20.82576032919164 3.484740070503187 24.963761653052384 1.050349225502723 1.2000449394196653 0.18163417948796545 0.13241207081571707 541.3541314443128 1773796.85055002 0.03598117880676486 0.05089055719503804 3053.093260086653 -3.484740070503187 0.14969571391694236 KMS(ph)QPGS(ph)PSPK ddPTM_BT-474_Trastuzumab_2h_R1 5 KMSQPGSPSPK 11 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 KMS(1)QPGS(0.977)PS(0.023)PK;KMS(1)QPGS(0.996)PS(0.004)PK;KMS(0.998)QPGS(0.69)PS(0.313)PK;KMS(1)QPGS(0.977)PS(0.023)PK;KMS(0.989)QPGS(0.652)PS(0.359)PK 164.53 1.5149e-05 983160000.0 2705540.0 1852680.0 1559820.0 1440910.0 1506260.0 2317080.0 2285170.0 2179480.0 3175260.0 2028420.0 True False 2690973.67325375 1914345.3338312923 1779429.0978015126 1623329.0582601684 1698073.2826975181 2156905.713419625 2174627.5969028645 2342123.8647751925 2392759.7193041313 1898964.4989822693 1.4170742395110334 1.0080995905174985 0.9370523244405988 0.8548496083682318 0.89421012536442 1.1358325627338461 1.145164955989611 1.233368957676897 1.260033939858542 1.0 20.85678150397379 2.5448412193481857 6.39145570574785 1.1788518675593913 1.007305841222977 0.1423916220407926 0.1586252892703377 0.3889785638399641 29.59839823481966 0.05328066025040541 0.04978771776523385 350.6236604155401 -2.5448412193481857 -0.17154602633641436 KMS(ph)QPGSPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMSQPGSPSPK 11 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 KMS(0.998)QPGS(0.14)PS(0.862)PK 176.42 5.7969e-06 128380000.0 315240.0 219160.0 184900.0 163550.0 170400.0 280860.0 266470.0 257800.0 378430.0 235020.0 True False 313542.78286645655 226454.60811498258 210932.31282038914 184255.4132308408 192099.42996007125 261444.8092733252 253579.82808574656 277038.3450818751 285170.99720220175 220020.8223892552 1.4250595896407692 1.0292417129245381 0.9586925025087539 0.8374453437177907 0.8730965909227167 1.1882730299534277 1.1525264987743735 1.259146030241383 1.2961091323333231 1.0 17.74728053880579 2.624349793200713 8.581362735757546 1.19915432123026 1.0110577447296931 0.16950410751165468 0.16688707517711435 0.49617605286798927 34.18461220855695 0.05570599450947437 0.05247472782019543 421.0656301502966 -2.624349793200713 -0.18809657650056688 KMSGGST(ph)MSSGGGNTNNSNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMSGGSTMSSGGGNTNNSNSK 21 1 Q86U70-2;Q86U70;A0A6E1WJ75;Q86U70-3 Q86U70-2 LDB1 LIM domain-binding protein 1 1 KMS(0.365)GGS(0.149)T(0.486)MSSGGGNTNNSNSK 215.36 3.8631e-25 1524900000.0 634380.0 488110.0 423410.0 419210.0 409390.0 592950.0 605330.0 529590.0 648930.0 593020.0 True False 630964.5685662435 504356.44628127443 483022.44765430497 472281.9430174303 461523.38985536085 551960.7621541625 576047.8753148391 569110.6950035302 489009.8967164989 555172.955890035 1.1365189205852109 0.9084672459823026 0.8700395841147184 0.8506933524171462 0.8313146109854391 0.9942140666223145 1.0376007498263997 1.025105219851984 0.8808244197207594 1.0 19.082577766139696 2.583915496292226 14.593335870506015 0.9964961981805912 0.9122451001390371 0.12271114201616706 0.08850592923952634 2.409943397785473 321.465728003712 0.02933904058128581 0.02765980433284416 383.63259215922767 -2.583915496292226 -0.08425109804155406 KMT(ph)GT(ph)LET(ph)QFTCPFCNHEKSCDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KMTGTLETQFTCPFCNHEKSCDVK 24 2 K7EN05;K7EPC8;A0A024R7E8;K7EQ44;K7EMV4;P60002 K7EN05 ELOF1 Transcription elongation factor 1 homolog 3 KMT(0.684)GT(0.731)LET(0.739)QFT(0.679)CPFCNHEKS(0.168)CDVK 51.119 0.049308 558580000.0 34100.0 52095.0 42722.0 44313.0 53265.0 66751.0 65508.0 54039.0 92987.0 82841.0 True False 33916.40938886615 53828.95058290749 48736.886253719145 49923.02125648574 60047.98202361032 62136.66048495241 62339.12777513828 58071.66458448192 70071.59981196297 77554.0164562516 0.4373262783623654 0.6940833375570242 0.6284250446424233 0.6437193524934641 0.7742730134097378 0.8012049320489267 0.8038155936166623 0.7487899046110691 0.9035199337675892 1.0 16.242913878689176 5.223047603181297 0.15485569061116572 1.049624450581916 4.325788969727721e-18 0.8313872663819958 0.060728645982758976 11.48361879253227 0.2594558746707189 0.2495221382225007 2.453714194500211 167127.37932196315 -5.223047603181297 -1.049624450581916 down KNDDGWYEGVCNR ddPTM_BT-474_Trastuzumab_2h_R1 3 KNDDGWYEGVCNR 13 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 0 ;; 201.76 1.5922000000000002e-07 1245180000.0 468909.0 543836.0 528480.0 519787.0 464158.0 586077.0 561940.0 561963.0 757490.0 655120.0 False True 466384.44604468695 561937.2525041951 602885.3903694934 585591.9809050385 523265.770019993 545562.8764668615 534756.8153807349 603899.532650294 570816.7393459711 613309.6807235499 0.760438748487504 0.916237375939104 0.9830032189582293 0.9548063552725737 0.8531836141941737 0.8895389941069177 0.8719197367793989 0.9846567755751804 0.9307153584671158 1.0 19.22625619766657 7.9999999877279135 0.051965389619968105 1.1505584233083392 0.47339155519276765 0.28776198941285624 0.05892271089610382 691.5494869307488 2.706011801033295 8.054999438725272 37.042739874088035 99999997.17424771 -7.9999999877279135 -0.6771668681155716 KNDKEAAGEGPALYEDPPDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNDKEAAGEGPALYEDPPDQK 21 2 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5M0;G3V359;G3V5D9;G3V3Y6 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 170.91 4.2677e-12 384790000.0 257120.0 290810.0 250100.0 319900.0 277670.0 394440.0 442260.0 333530.0 828700.0 421530.0 False True 255735.6944887175 300489.4350516429 285311.9060918299 360399.30719991424 313029.6286209684 367173.2912118866 420866.19420273363 358419.7022310233 624477.9890110852 394627.59451001015 0.6480431121555299 0.7614506416479718 0.7229902572983721 0.9132643338016048 0.7932279267232744 0.9304298440350777 1.066489520899578 0.9082479462087681 1.5824488649519532 1.0 18.590132315117728 2.317256519625654 0.7352523813634273 1.198130742121805 0.7287461745137948 0.5281433728599012 0.17095430803440673 0.5586190810512613 0.5897609856464934 0.13374878880014185 0.08943062183523438 207.61394442916878 -2.317256519625654 -0.4693845676080103 KNDMANMYVLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNDMANMYVLLR 12 1 A0A0A0MTN0;Q13617;Q13617-2;Q5T2B5 A0A0A0MTN0 CUL2 Cullin-2 0 66.98899999999999 0.090711 171230000.0 241970.0 282550.0 245470.0 242300.0 222310.0 292430.0 273310.0 206190.0 291640.0 267810.0 False True 240667.26040539425 291954.505944918 280030.0423365114 272975.1551564216 250619.8607653956 272215.00240617554 260088.9511544092 221576.94481160518 219769.22977578442 250718.13651632334 0.9599116511849365 1.1644730213839554 1.1169117887819004 1.0887730698279547 0.9996080229683689 1.085741168104337 1.0373758945734497 0.8837691117618015 0.8765589631026794 1.0 17.93570683644733 1.8508696645079077 4.267990844829897 0.9103777901160284 1.0725961004874858 0.5308759061824313 0.062460368476231 0.1587490656532578 4.480612820473972 0.02961909177061642 0.01656573913650827 70.93648495513173 -1.8508696645079077 0.1622183103714574 KNDMDEPPPLDYGS(ph)GEDDGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KNDMDEPPPLDYGSGEDDGK 20 1 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5;H7C2H0 Q12873-3;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 KNDMDEPPPLDYGS(1)GEDDGK;KNDMDEPPPLDYGS(1)GEDDGK;KNDMDEPPPLDYGS(1)GEDDGK 224.39 3.564e-25 1471930000.0 1690160.0 1158860.0 1086960.0 918950.0 974690.0 1532620.0 1436900.0 1499690.0 2364860.0 1500410.0 True False 1681060.366354431 1197431.9545543357 1239994.5199743134 1035288.9757779342 1098810.9940597531 1426673.586799416 1367391.6575089472 1611604.483071517 1782071.9405004857 1404652.5492343705 1.196780205375857 0.85247555006184 0.8827766842769718 0.7370427486443077 0.7822653329171535 1.0156772132560814 0.9734732324048869 1.1473331849573398 1.2686923477779855 1.0 20.421781883053505 2.017031829603495 1.7616786338967945 1.155302845724248 0.8868479500178886 0.3596932025922247 0.13474987684123957 0.3600226146983666 2.091566731986172 0.08263954618241547 0.04191192928848 103.99963847563504 -2.017031829603495 -0.2684548957063594 KNDMDEPPPLDYGS(ph)GEDDGKSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNDMDEPPPLDYGSGEDDGKSDK 23 2 Q12873-3;Q12873;Q12873-2;A0A5F9ZHX5;H7C2H0 Q12873-3;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 KNDMDEPPPLDYGS(1)GEDDGKSDK;KNDMDEPPPLDYGS(0.998)GEDDGKS(0.002)DK 193.61 1.6113e-17 480600000.0 746250.0 429096.0 383012.0 375762.0 376635.0 616130.0 608960.0 627800.0 1220300.0 605310.0 True False 742232.2729161694 443378.2009659907 436936.7604000157 423333.4306722541 424597.23475945654 573538.383314014 579502.278346892 674649.623903805 919573.4161822455 566678.5975680365 1.3097940809861899 0.7824156459566269 0.771048637226071 0.7470432666577422 0.7492734622088468 1.0121052493872487 1.0226295484493144 1.190533093713329 1.6227424507096189 1.0 19.11217118991489 1.8795082943187604 1.748619428355626 1.3176156447398522 0.8669374744228525 0.38280255520676076 0.2141508219917134 0.331363833463751 1.9017378401566678 0.14005663665394122 0.06313618957694703 75.77192039329749 -1.8795082943187604 -0.45067817031699964 KNDMDEPPSGDFGGDEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNDMDEPPSGDFGGDEEK 18 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 107.47 0.0006723 453910000.0 560980.0 450010.0 415110.0 351150.0 356500.0 587140.0 565600.0 492880.0 891720.0 568950.0 False True 557959.7460107378 464988.3108132102 473553.87979919877 395605.55399577983 401898.1618589517 546552.3937788934 538239.767198178 529661.208393927 671967.5544358202 532639.1238973989 1.047538044010106 0.8729894030517741 0.8890707771035204 0.742727179147254 0.7545411965200821 1.0261213817334502 1.0105148928223642 0.994409131117365 1.261581292637564 1.0 19.022798877036642 2.6118026005665578 6.218679310959028 1.0517923581557365 0.8574366010444118 0.46292787164946436 0.10628743478031066 0.23334070118187128 10.856064738175094 0.03567542692537848 0.03353151836967256 409.0746811640742 -2.6118026005665578 -0.1943557571113247 KNEIMVAPDKDYFLIVIQNPTE ddPTM_BT-474_Trastuzumab_2h_R1 1 KNEIMVAPDKDYFLIVIQNPTE 22 2 Q9NP97;B1AKR6 Q9NP97 DYNLRB1 Dynein light chain roadblock-type 1 0 129.84 5.775800000000001e-05 354420000.0 1564300.0 1467800.0 1332200.0 1209100.0 1240200.0 1707900.0 1714500.0 1665800.0 2127700.0 1764400.0 False True 1555877.982610067 1516654.8356961617 1519762.1803100195 1362171.9360281825 1398132.1187586864 1589836.892964152 1631563.0849739679 1790110.4547610045 1603356.8447193021 1651794.4814211607 0.9419319413583646 0.9181861622344637 0.9200673554753954 0.824661876128927 0.8464322495833562 0.9624907401290612 0.9877518682410258 1.0837367934664852 0.9706757485591161 1.0 20.655602765113464 2.3857677286956873 2.6327764994053156 1.0259110107144362 0.8905399775581835 0.6205950786735546 0.043819363603993224 0.17323379233267047 2.4540362507425213 0.018129449018368344 0.014442027933011416 243.09035547081766 -2.3857677286956873 -0.13537103315625276 KNELEQK ddPTM_BT-474_Trastuzumab_2h_R1 3 KNELEQK 7 1 O00487 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 0 ;; 121.05 0.0071768 903460000.0 1644730.0 1660690.0 1400230.0 1403160.0 1483890.0 1890940.0 2081260.0 2039730.0 3093890.0 2295030.0 False True 1635874.9564266815 1715965.0627416947 1597370.2129826585 1580799.912130763 1672854.5957948968 1760223.7685939674 1980581.5026147105 2191945.0101390732 2331442.2655019984 2148559.220525962 0.7613822978666716 0.798658490000397 0.7434611053409207 0.7357488204322277 0.7785936639835258 0.8192577387571701 0.9218184370686646 1.0201929689433884 1.0851189221264599 1.0 21.034938111845225 2.0816333540095813 1.5518803989797023 1.047490566721813 0.7621434379984336 0.9553984672578801 0.025877897903693863 0.07183930407255015 0.32748522190030954 0.016230812223892544 0.008417185960387012 120.67945883960613 -2.0816333540095813 -0.2853471287233794 KNFEWVAER ddPTM_BT-474_Trastuzumab_2h_R1 1 KNFEWVAER 9 1 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 133.89 0.00042362 592120000.0 961370.0 1025700.0 1078400.0 869240.0 708920.0 812510.0 1035100.0 739590.0 1448700.0 1008300.0 False True 956194.0907382478 1059839.8044512558 1230229.3463791672 979285.6948748145 799196.7599019577 756343.0961428084 985028.2585340064 794781.9613619236 1091687.2965854444 943949.4307509399 1.0129717330064674 1.1227718031548806 1.3032788688695782 1.0374344885146691 0.8466520915915727 0.8012538293932917 1.043518038620339 0.8419751476831242 1.1565103606418563 1.0 19.848350048050406 3.478561749826204 22.23426522573524 0.9343867306814231 1.1483793795098078 0.3529474962946587 0.11937341327607627 12.523595425061648 193309.84856184886 0.032128444597062815 0.04426201354648439 3009.9671083029098 -3.478561749826204 0.21399264882838476 KNGFVVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNGFVVLK 8 1 P63241;P63241-2;I3L397;I3L504;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 P63241 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 0 ; 132.08 0.0029405 0.0 3059800.0 3310000.0 3260700.0 2699700.0 2574800.0 3343900.0 3582900.0 3161500.0 4434700.0 3347900.0 False True 3043326.376775737 3420171.3490627487 3719778.2174875233 3041481.7431935244 2902685.517964742 3112744.063693908 3409581.43899284 3397427.1837717104 3341827.6069355067 3134234.1557186064 0.9709952178343144 1.0912303226682767 1.1868220537066623 0.970406674193168 0.9261227380438729 0.9931434312316811 1.087851535524825 1.0839736327845486 1.0662341870144363 1.0 21.579681535565676 -0.8628996560207366 7.757980190222332 1.0000018409857172 1.045549333709816 0.026262869934339017 0.07345224721208521 0.0 0.0 0.07524090881046504 0.0177344522808395 0.13711985457466794 0.8628996560207366 0.04554749272409886 KNGSTAVAESVAS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNGSTAVAESVASPQK 16 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK 200.27 2.2039e-11 1745900000.0 2452600.0 1806680.0 1663630.0 1620500.0 1556720.0 2560100.0 2509200.0 2271530.0 3479200.0 2571200.0 True False 2439395.474109478 1866814.2516388781 1897854.6434688193 1825655.1338463903 1754959.064597667 2383126.312827171 2387820.4099251544 2441043.103195624 2621797.778891474 2407103.814684929 1.0134151502845654 0.7755437219824396 0.7884390494047859 0.7584447013496817 0.72907493806094 0.9900388584358184 0.9919889600763653 1.0140996363778092 1.0891918175264272 1.0 21.19886693369634 2.6361797463929064 5.61601899093882 1.0184984439883966 0.8070082506470541 0.6399624313018044 0.07664812482460749 0.14653596834843655 6.638920018638636 0.02521700383736807 0.023720815301803796 432.6928774991451 -2.6361797463929064 -0.21149019334134256 KNHLEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 KNHLEGK 7 1 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;;; 114.78 0.0037829 4732920000.0 13505800.0 13217000.0 12768700.0 12115090.0 12567100.0 11752500.0 15228300.0 11897400.0 19271600.0 15509900.0 False True 13433086.27343543 13656919.855154779 14566421.972470012 13648859.151811827 14167445.693962509 10940077.337409226 14491648.951244725 12785244.401773069 14522372.406209731 14520044.903306559 0.9251408217323349 0.9405563099908028 1.0031940031502857 0.9400011668492607 0.9757163829938463 0.753446522394563 0.998044361966445 0.8805237509190874 1.0001602958474765 1.0 23.79154257909324 1.2106333079555613 23.92803352578573 1.0000804777169294 0.9275198982423762 0.156744593194161 0.06772352268139845 281.0587291233556 240799.08937939937 0.06202171391901408 0.015522782115415086 16.24176819778447 -1.2106333079555613 -0.07256057947455319 KNIDVWK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNIDVWK 7 1 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 78.516 0.056317999999999986 495770000.0 926050.0 752990.0 544160.0 573520.0 607740.0 935610.0 680970.0 687690.0 1200200.0 911980.0 False True 921064.2496938275 778052.8169579329 620772.9980764907 646127.5731956698 685132.086642804 870933.4828890397 648028.8795419784 739008.9198190627 904426.7918560432 853776.6556146399 1.078811705188574 0.911307204104576 0.7270906202390739 0.7567875848403445 0.8024722650089005 1.0200952171291782 0.7590145212806946 0.865576395137022 1.0593248080845452 1.0 19.703499190677295 1.2474762227661884 22.021967029929797 1.0296624176059772 0.8568156932385008 0.26251443145037345 0.10959047752188932 50.706433130019484 125259.65728217375 0.07734207447487428 0.027106610802303675 17.679754200141847 -1.2474762227661884 -0.1728467243674764 KNIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 KNIIEATHMYDNAAEACSTTEEVFNSPR 28 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 KNIIEATHMYDNAAEACSTTEEVFNS(1)PR;KNIIEATHMYDNAAEACSTTEEVFNS(1)PR;KNIIEATHMYDNAAEACSTTEEVFNS(1)PR 283.45 2.972599999999999e-62 1351760000.0 786657.0 845480.0 811156.0 842379.0 823354.0 1027260.0 910452.0 842124.0 1119580.0 925350.0 True False 782421.7261178092 873621.2906965478 925359.7141056556 949024.0950289356 928203.2514985004 956247.9341099345 866409.9584956063 904967.5690990248 843674.5106033918 866293.3707680068 0.9031833239404318 1.0084589357090943 1.068182841206881 1.0954996621843989 1.071465259714048 1.1038384528582725 1.0001345822691639 1.0446433040307483 0.9738900689675573 1.0 19.724496151672927 4.678803817714738 2.8643497585664823 1.0483079747462316 0.8872230780751986 0.5201272020909145 0.04070422874639152 0.2713254576486145 3.359590245416019 0.01020952088041821 0.09432653928703255 47731.3609789554 -4.678803817714738 -0.16108489667103298 KNLQEEIDALESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNLQEEIDALESR 13 1 Q9NQP4;E9PQY2 Q9NQP4 PFDN4 Prefoldin subunit 4 0 154.6 7.4201e-05 161320000.0 156510.0 176550.0 158150.0 154740.0 170680.0 202320.0 168780.0 178990.0 217650.0 188000.0 False True 155667.36754989577 182426.36002327118 180416.14533555738 174330.06813415047 192415.08630038137 188334.09461005195 160615.46659778728 192347.14269280358 164013.0738605799 176001.67904510227 0.8844652414367273 1.0365035209494935 1.0250819555495483 0.9905023013415489 1.0932571060931355 1.0700698745140345 0.9125791723647585 1.0928710665510901 0.931883574920611 1.0 17.425229666586247 4.742456109541865 24.124260545761583 1.0217118660876277 0.8844651525797305 0.3134079409884373 0.05845982476885094 263.1859595060197 1629763.4840958607 0.012991051970320277 0.09772956894846145 55265.755271272865 -4.742456109541865 -0.1372467135078972 KNLQYYDISAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNLQYYDISAK 11 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 ; 139.89 6.230600000000001e-05 2516400000.0 2579670.0 2438800.0 2280660.0 2157760.0 2007450.0 2610230.0 2595510.0 2611780.0 3461020.0 2496650.0 False True 2565781.3433482787 2519973.9837142685 2601757.1041479134 2430932.1947598835 2263086.858411648 2429790.9439204964 2469955.265488935 2806684.285950112 2608097.9962919527 2337311.6595103936 1.0977489171836603 1.078150606685519 1.1131408571730286 1.0400547932358755 0.9682435156660734 1.0395665182406504 1.0567505002761708 1.200817304157906 1.1158537568919165 1.0 21.156418686693403 1.9367487841004607 23.555039131311062 1.128098770795138 1.0544425555480152 0.09109016539750447 0.05965635127016436 171.7775981273179 63969.736875214694 0.02484637115487481 0.01603553163794686 86.44677262367058 -1.9367487841004607 -0.07365621524712274 KNNHHEENISSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNNHHEENISSK 12 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 41.401 0.090882 27686000.0 59059.0 46934.0 51286.0 45071.0 46364.0 63611.0 53634.0 33505.0 73986.0 53675.0 False True 58741.03290607177 48496.16981779789 58506.62301409676 50776.98397876627 52268.180579041946 59213.721294187424 51039.518518223194 36005.31323494264 55753.14166160752 50249.41554652056 1.168989375641389 0.9651091319241409 1.1643244479118713 1.0104989963864812 1.0401748957786867 1.17839621914344 1.0157236251030852 0.7165319803890886 1.1095281617751682 1.0 15.616819195880021 1.989917885906357 24.52947022148784 0.8994246395549162 1.0815294497382453 0.22082335968454136 0.11485001269826989 400.21082685024356 973700.3139637995 0.04253982542310312 0.02954639053882998 97.70524675998503 -1.989917885906357 0.18210481018332902 KNNIDTHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNNIDTHAR 9 1 O43847;O43847-2;F5H7V1;G3V1R5 O43847 NRD1 Nardilysin 0 89.08 0.008016800000000001 70051000.0 107290.0 138520.0 126920.0 139660.0 133480.0 137430.0 137070.0 116470.0 139120.0 144050.0 False True 106712.36256103968 143130.55446289183 144789.2327915837 157340.94168033756 150477.8868020559 127929.78757542225 130439.40044175065 125161.58282267643 104835.740112492 134856.60567259017 0.7913024506943315 1.061353678220179 1.0736532487189268 1.1667277319906426 1.1158362325045585 0.9486356781514648 0.9672451697207641 0.928108654362459 0.7773867626997528 1.0 17.041066665181116 2.2542625177598445 1.76915666328264 0.9011792385549415 1.0482700966527958 0.22120659286712185 0.10790781790731051 0.5156470106642931 3.2366115631966426 0.05631419317837918 0.035961046127486275 179.58188164844796 -2.2542625177598445 0.14709085809785427 KNPDDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNPDDFK 7 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 0 111.95 0.010365 205160000.0 545780.0 464570.0 444420.0 361010.0 364780.0 564490.0 574270.0 464230.0 769840.0 572050.0 False True 542841.5811218583 480032.93161150406 506990.473032112 406713.82898481033 411232.5707795468 525468.1349665293 546490.3661755609 498873.19991217484 580123.2473274935 535541.2792433549 1.0136316324463686 0.8963509447669908 0.9466879448553784 0.7594444065253759 0.7678821161284916 0.9811907229802014 1.0204448981928629 0.9315308067699525 1.083246557851015 1.0 19.030638255881904 2.5152471074836864 21.933063245415926 0.9966470083949966 0.8751772123299983 0.3923324519104897 0.07871165229076023 149.53747678615102 86025.51431470127 0.02674599268420437 0.02520514428188663 327.5270001516931 -2.5152471074836864 -0.1214697960649983 KNPDDYTPVNIDGAHAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNPDDYTPVNIDGAHAQR 18 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 0 235.24 5.642500000000001e-24 179580000.0 328160.0 331390.0 313610.0 317490.0 320980.0 349020.0 338520.0 317440.0 390070.0 382180.0 False True 326393.22302200383 342420.1158205147 357763.562053014 357684.2014470166 361854.9004024861 324893.068904707 322144.494328018 341128.9847276587 293942.47517021076 357788.94519924023 0.9122507204358894 0.9570449853609446 0.9999290555324114 0.9997072470974047 1.0113641163535159 0.9080578739619395 0.9003757624446079 0.9534363464966639 0.821552703386418 1.0 18.44874928677739 2.7227039920095284 24.526941996167423 0.9158012492947947 0.9776427593675062 0.26413672671546473 0.04950511410197988 847.1284022312722 1310331.4964966963 0.015595669590963776 0.014753058489443185 528.0851948837022 -2.7227039920095284 0.06184151007271155 KNPDSQYGELIEK ddPTM_BT-474_Trastuzumab_2h_R1 6 KNPDSQYGELIEK 13 1 P30085;P30085-3;Q5T0D2 P30085 CMPK1 UMP-CMP kinase 0 ;;;;; 236.05 1.6896e-16 6658030000.0 7555560.0 7098290.0 6528400.0 6151160.0 6377600.0 8375120.0 8406940.0 7584000.0 11172980.0 8650590.0 False True 7514881.704461635 7334552.291643089 7447541.974129967 6929896.225307363 7189749.557003231 7796167.667311874 8000264.194570446 8149956.590771684 8419548.789261574 8098501.940057295 0.9279347909137463 0.9056677822554424 0.9196197061202751 0.8557010020619117 0.8877875945723814 0.9626678767279171 0.9878696398156134 1.006353601085144 1.039642745236165 1.0 22.949223632441033 2.4312803871849744 2.079727835563963 1.0114565895231242 0.8985126240012254 0.8464259982957096 0.021973347690508335 0.1230027807100396 1.084673670714799 0.009695854425646485 0.007657030522134248 269.94816967950396 -2.4312803871849744 -0.11294396552189878 KNPEVPVNFAEFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNPEVPVNFAEFSK 14 1 O15347;E7ES08;E7EQU1;E9PES6 O15347 HMGB3 High mobility group protein B3 0 ; 124.92 0.0001511 3056600000.0 1112330.0 1260510.0 1065830.0 1244850.0 1047090.0 1336090.0 1286280.0 1132110.0 1688550.0 1568600.0 False True 1106341.3388714807 1302465.3133556147 1215889.5996395657 1402447.8823626554 1180430.7049113335 1243729.2431175576 1224057.7223332233 1216593.7969380957 1272429.4779107843 1468490.605053974 0.7533867326518016 0.8869415363455749 0.8279859574551898 0.9550267993107853 0.8038394667618232 0.8469439564932352 0.8335482148271784 0.8284654956259526 0.8664879935435585 1.0 20.48590260510243 0.8623549244878355 5.688591942031663 0.9999989700218417 0.8445488432019627 0.47376376590086455 0.04963028759071886 1.8293204539338623 75.19896931694674 0.04442738010336838 0.011185763293791435 7.283748211989268 -0.8623549244878355 -0.15545012681987902 KNPLPPSVGVVDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNPLPPSVGVVDKK 14 2 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 83.10600000000002 0.0049776 1529400000.0 2929000.0 2639100.0 2326100.0 2004600.0 2308300.0 3345900.0 3228600.0 3039300.0 4643000.0 3401300.0 False True 2913230.5894424915 2726940.8481303602 2653594.661176354 2258382.154463731 2602248.322633992 3114605.808401401 3072420.283550276 3266107.9992526863 3498794.8630125066 3184226.122000562 0.9148943818136221 0.8563904520754003 0.8333562251882958 0.7092405086623846 0.8172310077649482 0.9781358763694142 0.964887594609631 1.0257148437689092 1.0987896992737154 1.0 21.602511359196136 2.6177919013830646 2.866220008860623 1.0204636036593409 0.8211802163875561 0.7307030694286863 0.057200155700191484 0.1528166698091282 2.4276970287416626 0.021735348570395226 0.020191551746157988 414.755258903508 -2.6177919013830646 -0.19928338727178474 KNQDDDDDDDDGFFGPALPPGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNQDDDDDDDDGFFGPALPPGFK 23 1 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 0 ; 103.92 0.0027053 307100000.0 639600.0 458470.0 410040.0 458370.0 430790.0 617320.0 596290.0 576380.0 933140.0 584120.0 False True 636156.4646662408 473729.8967990325 467770.06786842865 516399.59500226553 485648.55300762434 574646.1214149721 567445.1746509931 619392.4023983353 703180.150435385 546840.9615097075 1.163329943151941 0.8663028744064244 0.8554042231529593 0.9443323221007438 0.8880983452059912 1.0508468857718718 1.0376786206439288 1.1326737497650674 1.2858951686685272 1.0 19.060761787522686 2.1843600175906337 1.5215230876806518 1.150806441938467 0.9366738171909025 0.36763258720950187 0.1065057393349678 0.38236742766325854 1.719566310282269 0.06083593368749667 0.03456118812340368 152.88328914223635 -2.1843600175906337 -0.21413262474756445 KNQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNQKPSQVNGAPGSPTEPAGQK 22 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 KNQKPSQVNGAPGS(1)PTEPAGQK;KNQKPSQVNGAPGS(0.971)PT(0.029)EPAGQK 142.4 6.0123e-08 1263974000.0 1030203.0 802012.0 855738.0 755374.0 853540.0 1306150.0 1094281.0 1202910.0 1731600.0 1273680.0 True False 1024656.5015143134 828706.4845935081 976218.4721919656 851004.2709497582 962233.2596720605 1215858.9248463784 1041346.4474706323 1292677.2524532133 1304870.3822512298 1192392.6519476892 0.8593280911624281 0.6949946255034988 0.8187055418342117 0.7136946622068685 0.8069768444985973 1.019679987846586 0.8733251129732025 1.084103672009146 1.0943294393166683 1.0 20.185427959266654 2.5589931439073443 1.1917390572780655 1.0482575824496791 0.7628768992776033 0.7140068581780642 0.07375834041706558 0.235015000976845 0.6801494042075008 0.03813947658512355 0.029759275030401388 362.2372798269839 -2.5589931439073443 -0.2853806831720759 KNQS(ph)SEDILR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNQSSEDILR 10 1 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 KNQS(0.936)S(0.064)EDILR 95.538 0.0045043 224070000.0 414070.0 365890.0 316050.0 370340.0 311970.0 360040.0 340660.0 397050.0 547320.0 464040.0 True False 411840.69312750146 378068.4274648247 360547.0928441542 417225.0060281848 351697.5303089403 335151.2822429968 324180.97435242456 426679.88717904774 412440.31971225573 434424.5699153688 0.9480142737040242 0.8702740444410799 0.8299417616144344 0.9604083998045168 0.8095709926753343 0.7714832572851217 0.7462307539731903 0.9821725489931893 0.9493945514928037 1.0 18.72874617493785 1.6289637692012047 9.739725695322814 0.9748889764492651 0.8484024663044084 0.4509127624102436 0.06524269548452258 0.1004620281736565 22.93336550489316 0.03391410289109024 0.017689663326666095 42.55629092810787 -1.6289637692012047 -0.12648651014485668 KNQTALDALHAQTVSQTAASS(ph)PQDAYR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNQTALDALHAQTVSQTAASSPQDAYR 27 1 Q8TEK3;Q8TEK3-1 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific 1 KNQTALDALHAQTVSQTAAS(0.055)S(0.945)PQDAYR 218.93 1.4663e-34 357950000.0 79860.0 87680.0 97251.0 86444.0 84479.0 108240.0 106550.0 88633.0 106830.0 118240.0 True False 79430.04263328004 90598.37579632083 110943.09547915457 97387.80153669702 95236.89990373752 100757.62356955309 101395.76943947285 95247.24452925444 80503.17794865945 110693.8219696431 0.7175652734717489 0.8184591893589753 1.0022519188973331 0.8797943715721086 0.8603632814291612 0.9102371006503422 0.9160020643905477 0.8604567340296122 0.7272599004733687 1.0 16.756215179280037 4.478208418159386 24.98298150309487 0.8895420949564959 0.742788704843289 0.3527972013368027 0.07402498096537317 35.6056303968791 818180.2767552958 0.017463528937495948 0.04921679719954751 30075.192665018007 -4.478208418159386 -0.14675339011320698 KNREELDK ddPTM_BT-474_Trastuzumab_2h_R1 6 KNREELDK 8 2 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;; 146.88 0.00030719 12339570000.0 13099470.0 11197340.0 9954490.0 8978320.0 9776740.0 12753970.0 13239660.0 12433680.0 19422500.0 13790850.0 False True 13028943.909007931 11570036.692965033 11355995.666021828 10114974.39143211 11021749.887721997 11872318.073516037 12599207.065387249 13361544.338547735 14636085.123166164 12910706.146059295 1.009158117426809 0.8961583171418186 0.8795797485862531 0.7834563250840838 0.8536907093254648 0.9195715508667043 0.9758728084158956 1.0349197160393933 1.1336393964503253 1.0 23.622064574659678 2.0070449856811283 1.75364942693747 1.0661807272560355 0.8805384837414689 0.6044321492272664 0.06077690842912537 0.2438472463702745 1.4011836521824985 0.03890228126137569 0.019531269079962665 101.63539647757575 -2.0070449856811283 -0.1856422435145666 KNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR ddPTM_BT-474_Trastuzumab_2h_R1 3 KNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR 39 3 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;; 244.48 8.7864e-51 1084162000.0 408631.0 486813.0 443528.0 481674.0 428875.0 534031.0 580760.0 453353.0 840390.0 635694.0 False True 406430.9760991724 503016.2764203269 505972.8871855145 542653.8790128522 483489.6891087177 497114.6939437557 552666.420081353 487184.50293988857 633287.1451490594 595123.4646749857 0.6829355591299634 0.8452301182495615 0.8501981810813678 0.9118341171595566 0.812419132847947 0.8353135499626864 0.9286584261690644 0.8186276157098834 1.064127332796256 1.0 19.182829476296742 7.999999997917155 0.09891473078879003 1.0881111420363287 0.14564169009739625 0.522353151504944 0.07003519446785006 115.91323522484582 0.8129185312700813 0.8952285680832816 14.829355744930188 99999999.52040721 -7.999999997917155 -0.9424694519389325 KNS(ph)ASAER ddPTM_BT-474_Trastuzumab_2h_R1 2 KNSASAER 8 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 KNS(0.994)AS(0.006)AER;KNS(0.998)AS(0.002)AER 88.18700000000003 0.0090609 406820000.0 421440.0 285090.0 244110.0 263580.0 287210.0 294350.0 304450.0 320470.0 501910.0 372390.0 True False 419171.0138663861 294579.048309456 278478.56615784345 296949.200974534 323784.491072958 274002.27732536965 289722.59038805705 344385.09871368704 378221.0057494306 348623.75138088106 1.2023593120264207 0.84497699064577 0.7987940151949026 0.8517755884340444 0.9287505219895775 0.7859541303197515 0.8310466204338647 0.9878417559033057 1.0848974123286677 1.0 18.41131133659155 1.5620283709097367 4.644659709859989 1.0410829718042551 0.8827772168803393 0.22628190993704844 0.11384004006099771 0.21709168268807014 10.268874416501742 0.06581770246161478 0.02906859531002197 36.477777577850595 -1.5620283709097367 -0.15830575492391585 KNS(ph)FGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 KNSFGYR 7 1 Q92615;H0Y4V9 Q92615 LARP4B La-related protein 4B 1 KNS(1)FGYR;KNS(1)FGYR;KNS(1)FGYR 133.76 0.001985 3982760000.0 6113700.0 4710100.0 4185200.0 4535300.0 3600800.0 5191700.0 4786100.0 5237400.0 7160300.0 6246700.0 True False 6080784.518495919 4866872.831184422 4774439.781589473 5109468.514985217 4059340.53638629 4832809.998947243 4554578.058322483 5628241.382978325 5395740.008104345 5848030.257931065 1.039800454221179 0.8322242903213432 0.8164184470684647 0.8737076057456756 0.6941380870731707 0.8263996227435749 0.778822587681654 0.9624165975108177 0.922659386173092 1.0 22.47951934519287 1.6710610768167435 6.91098468277433 0.9572267692908616 0.8320637441614381 0.3133458836822156 0.08380493400909113 0.1565749999039339 14.658363064646903 0.04222655057122128 0.021560750946700572 46.88793181489559 -1.6710610768167435 -0.12516302512942346 KNS(ph)LISSLEEEVSILNR ddPTM_BT-474_Trastuzumab_2h_R1 6 KNSLISSLEEEVSILNR 17 1 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;H0YFY6 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 1 KNS(0.995)LIS(0.005)SLEEEVSILNR;KNS(0.996)LIS(0.004)SLEEEVSILNR;KNS(1)LISSLEEEVSILNR;KNS(1)LISSLEEEVSILNR;KNS(1)LISSLEEEVSILNR;KNS(0.999)LIS(0.001)SLEEEVSILNR 281.91 3.246e-36 1192645000.0 709637.0 617932.0 588683.0 595688.0 587054.0 773913.0 779973.0 738763.0 938699.0 716366.0 True False 705816.3932400824 638499.493072218 671564.4494756362 671102.039722733 661811.8471583308 720414.2159052446 742242.7262037911 793893.2464225027 707369.2093721676 670646.9085682106 1.0524411344070108 0.9520650657070421 1.001368143050692 1.0006786449750347 0.9868260610807228 1.0742079128393869 1.1067563522933896 1.183772319352691 1.0547565348244978 1.0 19.3551938707685 2.5834955792831797 3.1243119095120018 1.1096941976721315 0.9961659913574727 0.38064390192908837 0.05091274319309185 0.2057636882310085 3.8362821360944546 0.017425341040341727 0.01596736880312608 383.26183912854117 -2.5834955792831797 -0.11352820631465876 KNS(ph)QQDLNTPDTRPAGLEEADQPPLPGEQGINLDNSGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KNSQQDLNTPDTRPAGLEEADQPPLPGEQGINLDNSGPK 39 2 Q14686;A0A0D9SFT8;F6M2K2;F6M2K4 Q14686 NCOA6 Nuclear receptor coactivator 6 1 KNS(0.953)QQDLNT(0.042)PDT(0.005)RPAGLEEADQPPLPGEQGINLDNSGPK;KNS(0.962)QQDLNT(0.03)PDT(0.008)RPAGLEEADQPPLPGEQGINLDNSGPK 128.73 5.8521e-09 692310000.0 229237.0 128904.0 121623.0 115148.0 128582.0 186312.0 184414.0 194021.0 238163.0 192902.0 True False 228002.81346262482 133194.49171588648 138746.46123393302 129725.7249936097 144956.15553477616 173432.68997127292 175493.1902901073 208499.83223867518 179470.91987069751 180590.82920828892 1.262538161335159 0.7375484807274644 0.7682918442879861 0.7183406021353793 0.8026772797393127 0.9603626647687631 0.9717724375012303 1.1545427481159451 0.9937986367164873 1.0 17.462365105950724 2.356129691243531 2.1923415163801367 1.0605223094353071 0.8405959455144151 0.2115109765561266 0.15286170777044736 0.39841739308000435 3.92631249342596 0.06480893038519571 0.048641322805928845 227.05427917766883 -2.356129691243531 -0.21992636392089204 KNS(ph)SRDS(ph)GRGDSVSDSGSDALR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNSSRDSGRGDSVSDSGSDALR 22 3 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 2 KNS(0.655)S(0.358)RDS(0.976)GRGDS(0.011)VS(0.001)DSGSDALR 69.492 0.026594 393320000.0 147890.0 134130.0 90571.0 101740.0 84956.0 156550.0 154680.0 143080.0 176630.0 143810.0 True False 147093.7766721237 138594.43596670282 103322.60954275534 114620.27356836274 95774.64302633706 145728.06697906103 147197.53746501787 153757.3561455185 133101.90322074067 134631.92267806455 1.0925624008494499 1.0294321971328713 0.7674451013362048 0.8513602961939851 0.7113813805909609 1.0824183750798082 1.0933331006272602 1.1420571962950214 0.9886355373459049 1.0 17.038661003470278 2.6833247523083927 24.80662645995676 1.0785821137691656 0.889154467228784 0.35934600876674094 0.11288242127481143 295.22020005847014 132583.99780004803 0.038669608128779016 0.03645807086953229 482.30831842152816 -2.6833247523083927 -0.18942764654038158 KNS(ph)STDQGS(ph)DEEGSLQK ddPTM_BT-474_Trastuzumab_2h_R1 5 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 KNS(0.989)S(0.007)T(0.003)DQGS(1)DEEGSLQK;KNS(1)STDQGS(1)DEEGSLQK;KNS(0.987)S(0.012)T(0.001)DQGS(1)DEEGSLQK;KNS(0.997)S(0.002)T(0.001)DQGS(1)DEEGSLQK;KNS(0.99)S(0.004)T(0.005)DQGS(1)DEEGSLQK 283.08 1.5496999999999996e-35 5239370000.0 9440910.0 5883730.0 4662780.0 4686630.0 4997590.0 8644030.0 8010330.0 8022760.0 12501710.0 7500640.0 True False 9390081.18954372 6079566.396260114 5319258.894389694 5279956.877468999 5634003.463463341 8046488.5519579165 7622839.735467786 8621459.08994981 9420831.084831383 7021942.7335790135 1.3372483293889939 0.8657954966205514 0.7575195492485198 0.7519225202763592 0.8023425535103653 1.1459063192696677 1.0855741814890167 1.2277882940745004 1.3416274444650278 1.0 22.743438799903643 2.671610754337237 6.110095369697645 1.1745309460262396 0.8847566661647591 0.3405911965743983 0.1776113678541658 0.2503635208893513 17.877662661542104 0.059104758516205794 0.05583224585153374 469.47314469725796 -2.671610754337237 -0.2897742798614805 KNS(ph)TDLDSAPEDPT(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNSTDLDSAPEDPTSPK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 KNS(0.759)T(0.241)DLDSAPEDPT(0.666)S(0.334)PK 130.3 2.6602e-05 396190000.0 515940.0 361140.0 298320.0 262240.0 316590.0 515240.0 437680.0 416690.0 838320.0 470760.0 True False 513162.23636632273 373160.3265862597 340320.8629560766 295439.55711192684 356905.8599240551 479622.6715444989 416507.7463000328 447785.52370894665 631727.2689124795 440715.6937620869 1.1643838502455166 0.8467144053819516 0.7722004634121181 0.6703631418022863 0.8098324270628875 1.088281353110641 0.945071283358649 1.016041702274111 1.4334122379892082 1.0 18.749488745932137 1.9137040670246501 1.1914377582680251 1.1809163018813376 0.8549524343205908 0.3323532072968731 0.17133976354928823 0.5382111591261253 1.409909251858714 0.1355397275240427 0.059231979110199645 81.97927382903643 -1.9137040670246501 -0.3259638675607468 KNS(ph)TGSGHSAQELPTIR ddPTM_BT-474_Trastuzumab_2h_R1 6 KNSTGSGHSAQELPTIR 17 1 O94763-3;O94763;O94763-2;O94763-4;I3L280 O94763-3 URI1 Unconventional prefoldin RPB5 interactor 1 1 KNS(0.712)T(0.218)GS(0.068)GHS(0.002)AQELPTIR;KNS(0.637)T(0.104)GS(0.259)GHSAQELPTIR;KNS(0.983)T(0.017)GSGHSAQELPTIR;KNS(0.995)T(0.004)GS(0.001)GHSAQELPTIR;KNS(0.846)T(0.04)GS(0.114)GHSAQELPTIR;KNS(0.686)T(0.277)GS(0.038)GHSAQELPTIR 289.22 2.8643e-46 7347310000.0 1790946.0 1696154.0 1745670.0 1616930.0 1745657.0 2113749.0 2046960.0 1806050.0 2422437.0 2099985.0 True False 1781303.7457288068 1752609.4605432563 1991445.1623643525 1821633.1722124307 1967956.0716303294 1967630.5068599337 1947940.7246534314 1940826.6219360768 1825459.86034276 1965962.1594123878 0.9060722441683343 0.8914767011930173 1.0129621024646687 0.9265860807600204 1.0010142169870337 1.0008486162561971 0.9908332748559399 0.987214638208589 0.9285325516582563 1.0 20.906804122460713 4.249379291795661 24.999893362732493 0.9808903290314575 0.8987744264859753 0.5708318044363011 0.028517976779003106 140.42035324025585 324478.15120570513 0.00663129496683387 0.017779951032433863 17757.396489957548 -4.249379291795661 -0.08211590254548218 KNS(ph)WEPKPITVPQFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KNSWEPKPITVPQFK 15 2 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 1 KNS(1)WEPKPITVPQFK 126.22 4.4687e-05 1069600000.0 644680.0 449430.0 418540.0 366340.0 391510.0 708720.0 659400.0 570700.0 837900.0 612500.0 True False 641209.1145106821 464389.0058638281 477466.7939851045 412718.60643831384 441366.47783842444 659727.8545474291 627502.30284738 613288.5319558808 631410.772284769 573409.7256123676 1.1182389936374182 0.8098729148130304 0.8326799715076305 0.7197621316896131 0.7697226923855733 1.150534818436989 1.0943349490231349 1.0695467909982255 1.101151138673938 1.0 19.129206848798542 2.737696858419912 24.99980193441202 1.0867818090894426 0.8396191705084951 0.5514161167983989 0.10486627039529556 57.70452694272179 1670122.7278430767 0.03331477296004194 0.033127715832924946 546.6342739004438 -2.737696858419912 -0.24716263858094745 KNTFTAWS(ph)DEESDYEIDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 KNTFTAWSDEESDYEIDDR 19 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 KNTFTAWS(1)DEESDYEIDDR;KNT(0.002)FT(0.001)AWS(0.997)DEESDYEIDDR;KNTFTAWS(1)DEESDYEIDDR;KNTFTAWS(1)DEESDYEIDDR 278.97 8.812999999999998e-40 2488300000.0 1749400.0 1562490.0 1384320.0 1364710.0 1568880.0 1721630.0 1870450.0 1683050.0 1876210.0 1805410.0 True False 1739981.4247766125 1614496.535104848 1579220.2232748596 1537482.1460731328 1768667.5685196982 1602617.7703810968 1779969.1876871148 1808647.7373547317 1413843.1854259532 1690187.1881107332 1.0294607822234996 0.9552175915553525 0.9343463460044855 0.9096519941035099 1.046432951900842 0.9481895151344034 1.0531195598972316 1.0700872365364524 0.8365009481620357 1.0 20.68875160305306 3.2368673896541615 24.99942257056718 1.0030035215037145 0.9553995822553373 0.045817474252807355 0.06903321316830709 112.46773696287305 1660516.7247340288 0.019664598507821363 0.02469955919729713 1725.3109936956303 -3.2368673896541615 -0.04760393924837725 KNTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_BT-474_Trastuzumab_2h_R1 4 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 KNTFTAWS(1)DEESDYEIDDRDVNK;KNTFT(0.026)AWS(0.974)DEESDYEIDDRDVNK;KNTFTAWS(1)DEESDYEIDDRDVNK;KNTFTAWS(1)DEESDYEIDDRDVNK 245.11 1.3562e-37 2474050000.0 623660.0 583801.0 483078.0 502509.0 546029.0 737180.0 746440.0 697030.0 1053250.0 743570.0 True False 620302.2838551401 603232.4633698432 551091.1834107522 566126.5878765914 615562.5565825574 686220.481735063 710331.8455222904 749045.9180466224 793690.6503269279 696114.7259976949 0.8910920293578075 0.8665704672534693 0.791667181901532 0.8132662142223752 0.8842831987217518 0.9857864747101117 1.020423529331633 1.0760380294685834 1.1401721881251454 1.0 19.408965569286725 2.554763874951705 1.532784390100431 1.0740120469952519 0.8381485644817074 0.8501187959805083 0.04227007246135134 0.1384536592154988 0.6577789889825092 0.01964485267216853 0.016115043433379068 358.72684254153785 -2.554763874951705 -0.2358634825135445 KNTLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KNTLAR 6 1 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 105.2 0.053201 1584300000.0 3211300.0 3476400.0 2844300.0 2673800.0 2486700.0 2176400.0 2445200.0 2416900.0 4247500.0 3172500.0 False True 3194010.7176089743 3592109.872471824 3244752.716901208 3012302.805849106 2803366.5051743523 2025950.5906945285 2326916.334428897 2597261.3507695217 3200760.538584026 2970028.333886103 1.0754142245605463 1.2094530653085604 1.0924989098186968 1.0142336931539269 0.9438854414921748 0.6821317384685333 0.7834660389869976 0.8744904286388279 1.0776868698744109 1.0 21.50204526363708 3.426833892143732 1.9936366031716903 0.8663763010611673 1.1363860968569077 0.48156898337890996 0.10802541230546608 0.2602566493654801 2.0905586813979586 0.03396108124618566 0.05408838647986509 2671.984239415834 -3.426833892143732 0.27000979579574047 KNVFIIGATNRPDIIDPAILRPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 KNVFIIGATNRPDIIDPAILRPGR 24 3 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;; 205.38 4.2966000000000005e-25 19568760000.0 12342010.0 14457260.0 13555660.0 14657130.0 13175230.0 14610010.0 15910430.0 13106630.0 17045370.0 14744580.0 False True 12275561.989486229 14938461.159501769 15464179.100091055 16512721.155170608 14853017.444793617 13600054.396964239 15140781.717155077 14084713.284718597 12844766.959756099 13803568.280929964 0.8893035293233039 1.0822173553587366 1.120303010450948 1.1962646772996675 1.076027382377171 0.9852564293649428 1.096874475426221 1.0203675598994966 0.9305396038429804 1.0 23.718537922212263 1.485918311003999 4.338229504506311 0.966213279811945 1.0688586613755144 0.19779281649922176 0.07851967017110853 0.2887361075981461 11.386571777182395 0.05240225602808868 0.02078969639650645 30.613875451945127 -1.485918311003999 0.1026453815635694 KPAAVLKPSDWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPAAVLKPSDWEK 13 2 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 86.37799999999999 0.0049799 796050000.0 869540.0 753820.0 627150.0 631480.0 660640.0 911920.0 959860.0 846420.0 1217800.0 944740.0 False True 864858.4932549761 778910.4430061877 715447.268714479 711425.3032528966 744768.5880799387 848881.1168287781 913427.9047787186 909584.158433672 917689.5076839607 884445.884367394 0.9778534883155368 0.8806762027767349 0.8089214742925822 0.8043740333098486 0.8420736658327485 0.9597886448823786 1.0327685626939789 1.0284226254094204 1.0375869500940065 1.0 19.75441434743371 2.533024858738261 3.1044012077675465 1.0267243915403568 0.8578211144374137 0.7300142289134418 0.04646914493834586 0.1375727459361201 2.6366822157457355 0.01778704392227464 0.01586151039948662 341.2124418448211 -2.533024858738261 -0.16890327710294306 KPADLQNLAPGTHPPFITFNSEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPADLQNLAPGTHPPFITFNSEVK 24 1 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 120.67 8.6129e-05 472910000.0 162380.0 179330.0 174150.0 144010.0 136920.0 197390.0 182120.0 159690.0 195470.0 166530.0 False True 161505.7641221139 185298.89064272575 198668.8062610644 162241.65123432197 154355.95041157844 183744.89390608005 173310.1598340385 171606.87868938927 147299.0376638068 155901.912826494 1.0359447244361686 1.1885607256720971 1.274319234826621 1.0406649174015177 0.9900837495391344 1.1785929407458458 1.1116615357177717 1.1007361973831176 0.9448186683106224 1.0 17.250279103616624 1.307197109880626 5.2704866474291245 0.9728143150574169 1.1186719425410738 0.33751183785705363 0.07996374454794092 0.21898582760632695 10.559124690613032 0.06036069031079229 0.02071432005713594 20.286032170826612 -1.307197109880626 0.14585762748365694 KPALGFYDT(ph)SEENYQALDADFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPALGFYDTSEENYQALDADFR 22 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 KPALGFY(0.002)DT(0.89)S(0.106)EENY(0.002)QALDADFR 72.95100000000002 0.008628299999999998 43090000.0 11537.0 10885.0 10505.0 13160.0 13136.0 15010.0 10795.0 11939.0 15824.0 16631.0 True False 11474.8860738812 11247.300644878547 11984.012688903133 14826.054650674792 14808.791736828034 13972.39402973941 10272.804609095348 12829.948805013599 11924.387230736571 15569.595341484543 0.7370060571392527 0.7223887582299958 0.7697061115629785 0.9522440580823178 0.9511353000530862 0.8974153613684835 0.6597990752992716 0.8240386807503424 0.7658765028378441 1.0 13.926443828371024 -2.5796600900185567 2.0643036154950156 3.9789426066296776 0.8105976254725609 0.2738204307099168 0.09334953903184023 6456477.340480656 253947.2714893888 90505907.61773805 0.02519636201727761 0.0026323274339292544 2.5796600900185567 -3.1683449811571167 KPALGFYDTSEENYQALDADFR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPALGFYDTSEENYQALDADFR 22 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 ;; 303.94 7.974599999999997e-56 491200000.0 409835.0 461658.0 427297.0 417403.0 422507.0 459675.0 456732.0 455974.0 532993.0 479482.0 False True 407628.49389694957 477024.0074518462 487456.7034678959 470246.1770027062 476310.7620548116 427898.74920855876 434638.1282743246 490001.0952690561 401644.01689029153 448881.04825480655 0.9080991400322163 1.0626958061750569 1.085937366620994 1.047596415199449 1.0611068654082152 0.9532564381414088 0.9682701685984368 1.0916056651848394 0.8947671514576819 1.0 18.77597366143213 2.754810165229041 24.625698240697147 0.9947287566364795 1.0384742414178851 0.11743590599660891 0.06500600402078108 1697.965529280552 2573210.1978026945 0.020059233906104573 0.021220194292902683 568.6043334694722 -2.754810165229041 0.04374548478140561 KPALPVS(ph)PAAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPALPVSPAAR 11 1 A0A087X0M4;A0A087WWF4;Q9BWU0 A0A087X0M4 SLC4A1AP Kanadaptin 1 KPALPVS(1)PAAR;KPALPVS(1)PAAR;KPALPVS(1)PAAR 135.47 7.3165e-05 1278150000.0 1852710.0 1800410.0 1697400.0 1625830.0 1694350.0 1910370.0 1887890.0 1737860.0 2318630.0 2091040.0 True False 1842735.2152154327 1860335.5584791722 1936379.165934715 1831659.9112998967 1910115.4293007448 1778310.6184272652 1796565.5482598422 1867547.9378742706 1747234.7045502223 1957588.0369705895 0.9413294219283777 0.9503202529568389 0.9891658149542557 0.9356717944263854 0.9757494392214873 0.9084192306258879 0.9177444458845727 0.954004572261456 0.8925446373559303 1.0 20.900645759417692 2.7473313711416423 24.9746360617186 0.9322092639952619 0.9584371120590013 0.1280814260794917 0.030886704709994977 1194.210374862911 3400507.307460832 0.008874471911648908 0.009277323307360237 558.8964758280296 -2.7473313711416423 0.026227848063739345 KPANDITSQLEINFGDLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPANDITSQLEINFGDLGR 19 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ; 277.64 2.6114000000000002e-39 5790900000.0 2207290.0 2435530.0 2258680.0 2169260.0 2161240.0 2697400.0 2309160.0 2282910.0 2865000.0 2577950.0 False True 2195406.1958929733 2516595.1437410247 2576682.5112015014 2443888.093580761 2436461.103326905 2510935.0869966075 2197457.108952166 2453272.3365820916 2158959.1390331327 2413423.0239059636 0.9096648926220383 1.0427492896243626 1.0676464447709266 1.012623178519898 1.0095458107396589 1.0404040494039983 0.9105146868930292 1.016511532491985 0.8945630822478033 1.0 21.202649382102077 2.25765422535476 24.99954954334997 0.9615216976587703 1.017293897277907 0.22772973358645965 0.05193546933486801 363.89658141507823 476454.13605580316 0.017356482898470905 0.014499302560127233 180.98985218844305 -2.25765422535476 0.05577219961913682 KPAPPRPKPPS(ph)GK ddPTM_BT-474_Trastuzumab_2h_R1 3 KPAPPRPKPPSGK 13 3 Q9UBC2;Q9UBC2-2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 KPAPPRPKPPS(1)GK;KPAPPRPKPPS(1)GK;KPAPPRPKPPS(1)GK 144.29 2.943e-05 2611540000.0 2273020.0 1524770.0 1384590.0 1201930.0 1200990.0 2272110.0 2070670.0 1941690.0 3250860.0 2045310.0 True False 2260782.3128762622 1575521.0477070722 1579528.2369279773 1354094.2147633398 1353928.9576745674 2115044.3836716334 1970503.781372438 2086588.7675020401 2449729.1122922315 1914776.564722012 1.18070293658753 0.8228223996128796 0.8249151707981625 0.7071813180249193 0.7070950118251167 1.1045906987997298 1.0291037699526662 1.0897296352720778 1.2793811859964372 1.0 20.8687446232111 2.719479408403075 23.75998602075613 1.0986886939323077 0.8379483064595252 0.44233927441393095 0.14122620057759494 406.57485510773023 506267.20065244485 0.04644326331953552 0.04386548838220193 524.1787470584012 -2.719479408403075 -0.2607403874727825 KPASFMTSICDER ddPTM_BT-474_Trastuzumab_2h_R1 2 KPASFMTSICDER 13 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 154.69 6.9482e-05 2506300000.0 2603200.0 2957100.0 2601200.0 2353400.0 2139100.0 2691900.0 2940300.0 2401100.0 3460400.0 2730200.0 False True 2589184.660442707 3055525.285895305 2967426.3499642885 2651340.1987004625 2411501.705560964 2505815.2890509972 2798066.4559632246 2580282.2745387466 2607630.786984383 2555956.298558181 1.0130003638572656 1.1954528673353813 1.1609847756936291 1.037318282865825 0.9434831522437593 0.9803826812158453 1.0947239033553189 1.009517367724279 1.0202172816707984 1.0 21.2854317387889 3.621860551848915 5.162927484310265 1.011711813306836 1.129644498613621 0.45167844889236697 0.05640388750754675 0.19511415892428816 7.48913064322347 0.015187465080071221 0.023839785029789767 4186.591157617409 -3.621860551848915 0.11793268530678502 KPAT(ph)PAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;H0YE72;P29692-3;E9PL71 P29692;P29692-3 EEF1D Elongation factor 1-delta 2 KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR 192.09 7.3837e-20 10024300000.0 886223.0 552319.0 413242.0 486435.0 522110.0 729757.0 767431.0 746077.0 1230520.0 704798.0 True False 881451.6738366323 570702.6040311145 471422.88163614523 548017.6211246959 588597.6137115781 679310.6162532002 730307.4306588842 801753.0542422427 927274.8341232297 659817.188232074 1.3359028675782298 0.8649404929269352 0.7144749940499188 0.8305597836774518 0.8920616561818844 1.0295436802326372 1.1068329890218274 1.215113926314157 1.405351134619252 1.0 19.33170683502257 2.229886909366005 1.7838568383202373 1.2252275031593551 0.9087449197215184 0.3142015774869905 0.17766058720222092 0.38822106818639085 2.464930497754828 0.09274419482581181 0.057945288419597465 169.78014860152217 -2.229886909366005 -0.31648258343783675 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_BT-474_Trastuzumab_2h_R1 18 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;H0YE72;P29692-3;E9PL71 P29692;P29692-3 EEF1D Elongation factor 1-delta 1 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR 337.46 1.5776999999999993e-117 321228855500.0 3269328.9 2814591.8 2088977.8 1997735.7 1976198.9 3022123.8 2920579.0 2921983.5999999996 5363162.0 3056926.5 True False 3251727.1964589856 2908273.786606331 2383087.716519464 2250648.8347875443 2227856.11606643 2813211.4950202126 2779299.4360747654 3140036.8537640744 4041482.5877889013 2861830.8336035516 1.136240185225933 1.0162284061159197 0.8327143898714428 0.7864367132957258 0.7784723296384242 0.9830111067319383 0.9711613291185124 1.0972126014206829 1.4122017766857167 1.0 21.448506964402622 1.6470005046452583 2.7872341565795353 1.216392148025718 0.916066928013971 0.3939194311356883 0.13968922007846174 0.21509600498302112 3.870184005709762 0.0929139815807998 0.03862074047851473 44.36091593999408 -1.6470005046452583 -0.300325220011747 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLREER ddPTM_BT-474_Trastuzumab_2h_R1 2 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 35 3 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;H0YE72;P29692-3;E9PL71 P29692;P29692-3 EEF1D Elongation factor 1-delta 1 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER 252.79 6.971099999999997e-60 556050000.0 103515.0 125192.0 109568.0 188676.0 116218.0 178201.0 196584.0 123105.0 432409.0 202019.0 True False 102957.68674159775 129358.94003983792 124994.22201787135 212562.3622546139 131017.67342194582 165882.38431003265 187074.48089619275 132291.72021452367 325847.59593374474 189125.97446283244 0.5443868143126542 0.6839829399808851 0.6609045762904214 1.1239194555816405 0.6927534612528528 0.8770999582748076 0.9891527667076588 0.6994899594847666 1.7229129782899346 1.0 17.528987990317418 5.028088667206675 0.24995620279481304 1.1487076511243255 2.9745677189851495e-15 0.3239551550282751 0.2675994737372431 15.155506924844513 0.7191354643089296 0.37263880083577877 5.528406507358798 106681.3903765881 -5.028088667206675 -1.1487076511243226 KPCNSQPSELSSETSGIARPEEGRPVVS(ph)GTGNDITTPPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITTPPNK 40 3 P27816-6;P27816 P27816-6 MAP4 Microtubule-associated protein 4 1 KPCNSQPS(0.001)ELS(0.045)S(0.045)ET(0.045)S(0.045)GIARPEEGRPVVS(0.259)GT(0.234)GNDIT(0.172)T(0.155)PPNK 50.706 0.024806 1175300000.0 287030.0 208050.0 220390.0 193290.0 198110.0 294100.0 298810.0 264220.0 352190.0 308980.0 True False 285484.6623720309 214974.81848111897 251418.99633577932 217760.49418153003 223338.1342100335 273769.55923693255 284355.41873494926 283937.4380819745 265397.49360421614 289260.6318689131 0.9869461341058213 0.7431872671098261 0.8691780651634516 0.7528175983526668 0.7721000011893969 0.9464459697405323 0.9830422373681782 0.9815972406872466 0.9175029864571712 1.0 18.142010461471102 2.6378604568559396 5.397943574221518 0.9697573511697408 0.8191399390580845 0.5130486733012973 0.06869743809166344 0.17341345860763224 7.538633814851356 0.021435740760485655 0.020165431724119838 434.3706341344066 -2.6378604568559396 -0.15061741211165636 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITT(ph)PPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITTPPNK 40 3 P27816-6;P27816 P27816-6 MAP4 Microtubule-associated protein 4 1 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDIT(0.198)T(0.802)PPNK;KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDIT(0.119)T(0.881)PPNK 241.63 4.4486999999999984e-51 1681090000.0 258303.0 190911.0 203065.0 175296.0 181071.0 278163.0 267778.0 248776.0 334343.0 292597.0 True False 256912.3253481611 197265.3572268634 231654.7869273792 197488.45562649614 204129.3185580992 258934.2465352699 254824.5551287017 267340.9283789312 251948.6476166685 273923.2089551054 0.9378990788263863 0.7201483874964175 0.8456924399032805 0.7209628434911607 0.7452063639907014 0.9452804219218529 0.9302773434231567 0.9759703436547685 0.9197783881757956 1.0 18.063411982268722 2.726750909857744 23.622131712028082 0.9527367692947678 0.7886961698482923 0.6091673101082946 0.06411547371584322 226.7034271255567 453457.7418958843 0.019559559391295698 0.01859687597126111 533.0290882989449 -2.726750909857744 -0.16404059944647553 KPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGS(ph)PTEFLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 43 2 P27816-6;P27816;P27816-2;P27816-5;H7C456 P27816-6 MAP4 Microtubule-associated protein 4 1 KPCSETSQIEDTPSSKPT(0.001)LLANGGHGVEGS(0.027)DT(0.047)T(0.047)GS(0.831)PT(0.047)EFLEEK 101.09 7.4446000000000015e-06 90480000.0 65566.0 51087.0 46486.0 38592.0 41481.0 62862.0 58794.0 57736.0 81935.0 66231.0 True False 65212.999941067355 52787.39991225638 53030.82473644464 43477.74324307308 46763.35947285048 58516.49790123108 55949.90960510898 62044.55349746754 61743.21712275028 62004.08087678807 1.0517533526648981 0.8513536394024338 0.8552795878359247 0.7012077693639268 0.7541980916671708 0.9437523639373452 0.9023585030845036 1.0006527412406918 0.9957927970167613 1.0 15.920075550967592 2.138132988941193 1.673641017860077 0.9968485404468684 0.8407293145892416 0.3325591377000269 0.08915149901387737 0.4422421936012556 2.3922988334480064 0.05409263414333003 0.030222738410554822 137.4462796312091 -2.138132988941193 -0.15611922585762683 KPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPT(ph)EFLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 43 2 P27816-6;P27816;P27816-2;P27816-5;H7C456 P27816-6 MAP4 Microtubule-associated protein 4 1 KPCSETSQIEDT(0.001)PS(0.001)S(0.001)KPT(0.006)LLANGGHGVEGS(0.194)DT(0.194)T(0.194)GS(0.194)PT(0.215)EFLEEK 54.856 0.018924 90704000.0 29994.0 26203.0 20366.0 18476.0 22403.0 28284.0 30345.0 26580.0 37346.0 34410.0 True False 29832.51563664667 27075.151014952004 23233.355775554617 20815.059705613043 25255.889257015697 26328.79365337438 28877.096420842823 28563.534570505188 28142.5787107614 32213.924340116857 0.9260751754946989 0.840479748108013 0.7212209083952401 0.6461510086708527 0.7840053571356989 0.8173109670027515 0.8964165966231381 0.8866828601485929 0.8736153476251479 1.0 14.975396801870867 2.3369485983567926 2.332681282331491 0.9063398574600716 0.7761986649069522 0.40031488279642435 0.07541132825690816 0.3442240558800351 3.8431832962515595 0.034115991127383644 0.025579188973376372 217.24440404319975 -2.3369485983567926 -0.1301411925531194 KPDCDDWESGLNAMECALHLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPDCDDWESGLNAMECALHLEK 22 1 G3V192;P02794;G3V1D1;E9PPQ4 G3V192 FTH1 Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed 0 ; 95.957 0.00099816 239400000.0 132267.0 115204.0 131800.0 111160.0 134714.0 143666.0 156062.0 145646.0 141633.0 118995.0 False True 131554.8891682453 119038.49549771141 150356.2943738631 125232.84460250844 151869.0293875648 133734.7075733873 148512.68484526532 156514.84409540234 106729.44493496681 111400.63722325492 1.180916846145142 1.0685620698843012 1.3496897156210894 1.12416632188138 1.3632689468661503 1.2004842243888902 1.333140353116968 1.4049726105402367 0.9580685317003466 1.0 16.765397959504348 3.2783764282685515 24.999160206499386 1.2496565002895148 1.1848755725682862 0.0 0.15432568275335043 618.5989761688577 388395.8596975115 0.04150058541083699 0.05619143427050148 1898.3506191438066 -3.2783764282685515 -0.06478092772122857 KPDGVKES(ph)TESSNTTIEDEDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPDGVKESTESSNTTIEDEDVK 22 2 Q13557;D6R938;Q13557-8;Q13557-12;H0Y9J2 Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 KPDGVKES(0.947)T(0.053)ESSNTTIEDEDVK 222.63 4.3724e-26 351480000.0 373540.0 178900.0 155600.0 160430.0 154950.0 287040.0 215050.0 235610.0 579670.0 252510.0 True False 371528.90214419574 184854.57835266634 177507.12750055475 180740.42155074168 174681.96403939568 267197.6004194801 204647.2099292223 253192.4146033382 436818.09568004776 236394.59561531266 1.571647190906126 0.7819746380897898 0.7508933401735373 0.764570869652462 0.7389422908959282 1.1303033376206852 0.8657017280642354 1.0710583883878666 1.8478345266018108 1.0 17.850837527853646 1.432881161087165 7.271728405767959 1.440366140330738 0.9287452181330036 0.27614535181255484 0.3057533588129702 0.2211333889334331 24.506926985717673 0.18209028854986228 0.07211675232525183 27.09450125427816 -1.432881161087165 -0.5116209221977344 KPDHVPISSEDER ddPTM_BT-474_Trastuzumab_2h_R1 3 KPDHVPISSEDER 13 1 A0AVT1;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ;; 153.09 2.8177e-05 3175900000.0 2513140.0 2673190.0 2328910.0 2441890.0 2403090.0 2646180.0 2614230.0 2372000.0 3176800.0 2619090.0 False True 2499609.533476104 2762165.5131725185 2656800.284751397 2751033.0236273743 2709109.2672696495 2463255.805037695 2487769.7075715885 2549010.684771947 2393920.206939079 2451937.433884237 1.0194426248129616 1.1265236522764097 1.0835514185786652 1.121983369399979 1.1048851531982258 1.0046160929708259 1.0146138613457962 1.0395904273682595 0.9763382106968161 1.0 21.225490735556555 2.7375371668095227 24.999999999116934 1.0125762553278181 1.0945120626673255 0.638915448813622 0.03148207783599553 58.29359637399036 1423926.9237510231 0.00958469142691455 0.00951191121896055 546.4333115024808 -2.7375371668095227 0.08193580733950734 KPDIYER ddPTM_BT-474_Trastuzumab_2h_R1 2 KPDIYER 7 1 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RG31;A0A3B3IRR8 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 ; 92.062 0.025567 1310660000.0 1778420.0 1935940.0 1704020.0 1645400.0 1729150.0 2224200.0 2000670.0 1816320.0 2466900.0 2076500.0 False True 1768845.1843210387 2000376.5925995552 1943931.204392644 1853707.471293337 1949347.0030249846 2070446.2892036259 1903889.9487984048 1951863.021486076 1858965.5497664341 1943975.9922189082 0.9099110232848244 1.0290130128182653 0.9999769607101923 0.9535650021981309 1.0027628997619182 1.0650575405719702 0.9793793526355498 1.0040571639252425 0.956269808478735 1.0 20.890578971333404 3.07550150486048 24.999466810189293 1.0030666935602857 0.9789195050824638 0.10449361238315513 0.03868085661512412 101.45473057026274 33589.24993491414 0.011051584767440614 0.013209164798085203 1189.8754521538076 -3.07550150486048 -0.024147188477821824 KPDQPYEWLSYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPDQPYEWLSYK 12 1 E7EPM6;P33121-2;P33121;P33121-3;D6RER0 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ; 161.76 0.00010344 3505300000.0 5513300.0 5341700.0 5586500.0 5021000.0 5026600.0 6529800.0 6077200.0 5500900.0 8226000.0 6278000.0 False True 5483617.005385219 5519495.255374163 6373030.6412715195 5656658.085185273 5666707.715007591 6078410.295495831 5783222.618841524 5911405.091004205 6198812.522752716 5877332.665133781 0.9330111664285724 0.9391156788040221 1.0843406362002235 0.9624532772736142 0.964163173649216 1.0342123956254692 0.9839876264192858 1.0057972600517497 1.054698257855312 1.0 22.486730128490724 4.430128408843374 24.999953446340076 1.0076162415802377 0.9345367929547533 0.40109081062726315 0.0365520473786846 98.36978709358458 52332.01764027537 0.008535467088104593 0.023375354862042085 26923.307338435483 -4.430128408843374 -0.07307944862548432 KPDS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPDSPPK 7 1 Q96T23-2;Q96T23;Q96T23-3;H0YCN2 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 KPDS(1)PPK 68.657 0.036564 0.0 639670.0 379310.0 283240.0 265800.0 274980.0 417960.0 475570.0 449000.0 828190.0 472440.0 True False 636226.0877940186 391935.1040522627 323117.73003378644 299450.252746912 309997.07306584716 389067.40897201054 452564.8622461766 482506.65997580194 624093.6716774339 442288.4747237666 1.4384866985091045 0.8861526502517336 0.7305587834627415 0.6770473793917762 0.7008934005333449 0.8796688840128707 1.0232345812963544 1.0909320218600627 1.4110556963240215 1.0 18.754628123014083 1.856814519641058 1.9840847226543028 1.2006716056772502 0.8623670513768987 0.23804947479455618 0.22445950460006883 0.4370333968615343 3.2390595881323647 0.14739938605738584 0.0676112187638155 71.91417782384465 -1.856814519641058 -0.33830455430035145 KPDSNEKGER ddPTM_BT-474_Trastuzumab_2h_R1 1 KPDSNEKGER 10 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 0 49.5 0.095174 25784000.0 35049.0 39391.0 33743.0 32565.0 31849.0 28006.0 40016.0 36878.0 51902.0 44934.0 False True 34860.30007830996 40702.105622637646 38493.72110058626 36687.725661035314 35904.78136618727 26070.011139032773 38080.273204035155 39630.02362268963 39111.44755116846 42066.27365006715 0.828699503271888 0.9675709800497785 0.9150732346962901 0.872141087804119 0.8535289259244847 0.6197366411843126 0.9052447459646659 0.9420854329136987 0.9297578358501936 1.0 15.360376405294094 2.007355892986281 24.99702869111572 0.9440509172522871 0.845981132004888 0.2582902122705143 0.08667341101292211 290.68399041049906 987807.27418236 0.03485386786013111 0.025689213790174647 101.70818234528329 -2.007355892986281 -0.09806978524739907 KPDSWDGNREPGPGHEHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPDSWDGNREPGPGHEHFR 19 2 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 0 94.45 0.000513 471510000.0 214200.0 202950.0 197980.0 177370.0 176130.0 173060.0 214180.0 157650.0 282850.0 219260.0 False True 213046.7709998572 209705.06806413422 225853.863126991 199825.02381384434 198559.11149570055 161096.7695394204 203819.29515294507 169414.64353047928 213145.4074958192 205266.63908206986 1.0379025639654804 1.021622748839814 1.100295031559853 0.9734900162415099 0.9673228556945997 0.7848171054966734 0.9929489568514536 0.8253393941075042 1.038383092591092 1.0 17.647139647222954 3.372584961118391 2.4795414840674472 0.9147109030737491 1.0489499506737214 0.2990814768540664 0.07737579370875465 0.28793316460856844 3.5910700486408365 0.021551599171906743 0.03153104502677113 2358.223490582372 -3.372584961118391 0.1342390475999723 KPEDPEECPEEVYDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPEDPEECPEEVYDPR 16 1 H3BQQ6;H3BTI2;H3BTP8;H3BSY6;H3BP64;H3BUL4;H3BMX9;Q9GZU8;Q6P4H7;H3BSF0;H3BN22 H3BQQ6 FAM192A;NIP30 Protein FAM192A 0 80.638 0.024062 414360000.0 189380.0 174260.0 147180.0 127930.0 138100.0 167570.0 171680.0 154290.0 221700.0 157140.0 False True 188360.3991220961 180060.13875760572 167901.6646885066 144125.9248830416 155686.21641717042 155986.28031735067 163375.18251871128 165803.90326874523 167065.0056277993 147111.19066567766 1.280394769900005 1.2239730909853572 1.141324898049918 0.9797074187957575 1.0582894184507026 1.060329126638927 1.1105557760727727 1.1270651982251187 1.1356376416493585 1.0 17.16654747020564 4.200553644792854 2.80105500246485 1.0768968357265776 1.2651632732791331 0.6869318041293165 0.049460803966697685 0.15858539925777188 2.47737247859539 0.013553321265663823 0.04072623410658347 15869.149252756775 -4.200553644792854 0.18826643755255557 KPEDRPNTSEILR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPEDRPNTSEILR 13 2 P19525-2;P19525 P19525-2 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase 0 ; 202.25 5.3654e-08 1209300000.0 402200.0 395220.0 421270.0 405110.0 399270.0 456660.0 469900.0 451860.0 603970.0 478860.0 False True 400034.5998886205 408374.65878446447 480581.15425551817 456396.8844631355 450114.667841301 425092.1690620114 447169.1418076796 485580.0876985881 455129.68628336507 448298.74482732743 0.8923393261846027 0.9109431232999756 1.0720109297665446 1.0180641586202237 1.004050698412446 0.9482341272798911 0.9974802449645873 1.083161827467575 1.015237476202769 1.0 18.774100934490313 4.320092441466584 7.206340172071343 1.019511462211167 0.8986052066626262 0.6198397981520807 0.036237612771442364 0.14865169847317697 10.952849234272419 0.00970175314717605 0.026848922273853472 20897.408939423585 -4.320092441466584 -0.12090625554854073 KPEDWDEEMDGEWEPPVIQNPEYK ddPTM_BT-474_Trastuzumab_2h_R1 12 KPEDWDEEMDGEWEPPVIQNPEYK 24 1 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 ;;;;;;;;;;; 253.44 9.2312e-44 14574580000.0 8497814.0 6850770.0 6153032.0 5349469.0 5860268.0 9022592.0 8932364.0 8636259.0 13340155.0 8567622.0 False True 8452062.713619899 7078793.738072074 7019325.422487097 6026711.226906587 6606538.393270224 8398881.45193702 8500271.428375844 9280740.500614606 10052652.549168775 8020829.028849765 1.0537642285129192 0.8825513812363628 0.8751371457039661 0.7513825821781485 0.8236727611955645 1.0471338338876761 1.059774668902877 1.1570799561034304 1.2533183930253138 1.0 22.93531992994419 2.4721716685620425 2.337117180395359 1.135752107701833 0.8714747759659234 0.5888001371399705 0.09487256090097748 0.2025403742109886 2.2419255515492793 0.0379328915071414 0.03158921546960567 296.6003564094096 -2.4721716685620425 -0.2642773317359097 KPEDWDERPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPEDWDERPK 10 2 P27824;P27824-2;P27824-3;D6RGY2 P27824 CANX Calnexin 0 ; 143.17 1.9377e-05 2552000000.0 3210100.0 3270500.0 3380400.0 2307200.0 2963000.0 4902100.0 3542800.0 3076200.0 5268800.0 3425700.0 False True 3192817.178275639 3379356.615441001 3856330.9370364747 2599291.283437452 3340320.4869230734 4563229.365302166 3371421.2291897195 3305761.6646270873 3970374.8383028884 3207068.8931106725 0.9955561556954238 1.053721241442749 1.2024471770221485 0.8104881342029072 1.0415493393667494 1.4228660242081972 1.0512468991333812 1.0307735115165202 1.2380073427271632 1.0 21.612823914897174 2.974409711981825 24.986405812371167 1.1423450319192916 1.0184277028982422 0.16538621537368992 0.14412607658537027 1480.5520627049882 1445614.9908969179 0.0444190782035455 0.04728857796866296 942.7785913330863 -2.974409711981825 -0.12391732902104935 KPEEES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 7 KPEEESPR 8 1 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33 P49321 NASP Nuclear autoantigenic sperm protein 1 KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR 122.7 0.0008448 19530530000.0 34282680.0 27021050.0 23918120.0 19548440.0 19937050.0 25048430.0 28020860.0 26410250.0 35843300.0 29216350.0 True False 34098105.860043846 27920429.314680323 27285583.39597407 22023270.499653284 22475915.141346484 23316890.99176188 26665383.951719835 28381116.963532116 27010198.990612984 27351737.529624354 1.2466522765916637 1.0207917973927625 0.9975813553497787 0.8051872564147023 0.8217362833715072 0.8524829900297056 0.9749063993773289 1.0376348827124 0.9875130953329215 1.0 24.70512914789666 4.758612891120303 1.7497704109489522 0.9311479163358164 1.3621988564753194 0.6068319934573518 0.07639493180643038 0.7534196256472446 2.207898045733861 0.023215896930098755 0.5497413116368234 57360.495084866496 -4.758612891120303 0.43105094013950296 KPEEES(ph)PRKDDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KPEEESPRKDDAK 13 3 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33 P49321 NASP Nuclear autoantigenic sperm protein 1 KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK 127.78 0.00095552 1427330000.0 1959530.0 1071250.0 883130.0 868190.0 874110.0 1726480.0 1712430.0 1452540.0 3103310.0 1516420.0 True False 1948980.10820425 1106905.9086657 1007467.0276964332 978102.764982474 985422.7272441193 1607132.5012967666 1629593.218782135 1560935.9106486687 2338540.832723532 1419640.7773275196 1.3728685026033234 0.7797084490271232 0.7096633484936905 0.6889790576625708 0.694135265048657 1.1320698355271261 1.1478912446075633 1.0995287931832571 1.6472764589967934 1.0 20.437094488961964 2.599242210302969 4.814026248183675 1.206899916960919 0.8297359940927518 0.3466125934730975 0.24556606375508666 0.26227878887378653 9.205287422518422 0.08127396470001273 0.07600574870194056 397.4131288849245 -2.599242210302969 -0.37716392286816713 KPEEESPR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPEEESPR 8 1 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33 P49321 NASP Nuclear autoantigenic sperm protein 0 ;;; 112.75 0.0047803 2376800000.0 2100580.0 3093430.0 2659180.0 2728890.0 2791270.0 2160440.0 2497750.0 2304150.0 2209070.0 2611020.0 False True 2089270.7106763802 3196392.947532077 3033569.429993091 3074367.194200603 3146721.6893465254 2011093.8679287292 2376924.290168401 2476097.373236625 1664674.2985214377 2444382.468193312 0.8547233249551975 1.307648450733076 1.241037141063795 1.2577275586798509 1.2873278753599984 0.8227410784103543 0.9724027729282599 1.0129746082930933 0.6810203886594838 1.0 21.22103860807948 2.739423974128038 24.99968745248011 0.9143587314126433 1.2028781262252235 0.48135290729002334 0.15068316171271648 68.83929153789848 1993360.9860259413 0.04619619782699638 0.046469963727905315 548.8124742593293 -2.739423974128038 0.28851939481258015 KPEENPASK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPEENPASK 9 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ; 155.0 0.00011922 1262450000.0 1704160.0 1474870.0 1196220.0 1177680.0 1235470.0 1415080.0 1635420.0 1576110.0 2313700.0 1608760.0 False True 1694984.9919099738 1523960.1563722582 1364637.3782693676 1326774.16724975 1392799.7812955934 1317258.8503400153 1556308.4866889021 1693727.3315244154 1743519.6369916105 1506087.5594712696 1.1254226098946192 1.011866904276975 0.9060810373790221 0.8809409246534978 0.9247800850201251 0.8746230204586877 1.0333452905190075 1.1245875585872438 1.1576482562565582 1.0 20.522374215790144 2.008625852842036 5.587549760493131 1.1019460815217985 0.9495746783482564 0.39238615334408844 0.07856198679019925 0.15938038706829663 17.02839601041069 0.03323101204414684 0.02275992217849368 102.00603173130482 -2.008625852842036 -0.15237140317354214 KPEKPLFSSAS(ph)PQDSSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;O00712;O00712-4;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWJ4;Q5VW27;O00712-5;Q5VW26;A0A2R8Y7V8;Q5VW30;A0A1B0GWI9;Q5VW31;A0A1B0GVN4;A0A1B0GWB8;O00712-6 A0A1B0GW37 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 KPEKPLFS(0.001)S(0.013)AS(0.6)PQDS(0.286)S(0.101)PR 55.988 0.054067 396420000.0 219200.0 213320.0 207760.0 160690.0 170970.0 247930.0 226730.0 181420.0 277420.0 257410.0 True False 218019.85155540964 220420.22724533666 237010.80211770735 181033.33752408327 192742.01608141666 230791.18266444321 215762.2037072893 194958.48163209372 209053.55823754685 240981.87342021137 0.9047147341876549 0.9146755484840123 0.9835212862853818 0.7512321775688372 0.7998195604750876 0.957711795451112 0.8953461961475195 0.8090172047593617 0.8675073990856166 1.0 17.878565105911616 3.77680988701673 24.998329826742403 0.8601920867351389 0.9323410057142022 0.1405806708512044 0.07223320844126595 995.8455738564812 650845.2860989071 0.018439920443867126 0.03324199359806833 5981.496969212338 -3.77680988701673 0.07214891897906328 KPELWSDDFTDFVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPELWSDDFTDFVK 14 1 A0A087WZ06;Q13188;Q13188-2;E5RFQ9 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 0 109.79 0.0011978 134470000.0 259090.0 245040.0 232110.0 219170.0 199060.0 264030.0 284110.0 243880.0 371450.0 300350.0 False True 257695.08822760498 253196.00827019187 264789.070463713 246916.89952799355 224409.11107894266 245778.22755976676 270366.51389440265 262079.56399754726 279911.124674994 281181.40585742827 0.9164727213799766 0.9004720902440246 0.9417019224876239 0.8781409239172508 0.7980937089159027 0.8740913248167892 0.9615376702095684 0.9320657715554402 0.995482342871995 1.0 18.10114166854772 1.6980182368082675 1.3766598130685732 0.9942454871760869 0.8863644295556444 0.5328211760645333 0.03959248720624057 0.3546547090752635 1.288669461218713 0.035445312791125914 0.013393026586989824 49.89054369589103 -1.6980182368082675 -0.10788105762044242 KPEMFETAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPEMFETAIK 10 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 102.66 0.0046779 405440000.0 996730.0 894510.0 847020.0 730640.0 718310.0 1002400.0 1073300.0 919810.0 1420900.0 1064300.0 False True 991363.7164271128 924283.2246072867 966273.0535701794 823138.9490857922 809782.5207430688 933106.4473957872 1021380.3785958348 988450.8929005399 1070738.2340845286 996375.4628069272 0.994970022278855 0.9276455102612156 0.9697880865593126 0.8261332999579257 0.8127282846386037 0.936500829483594 1.0250958767274994 0.9920466027093214 1.0746332823854488 1.0 19.926329967992032 2.3334263836487974 4.39175826469298 1.019234015078114 0.9039071513562114 0.487403540303472 0.05654192735889383 0.20138907121138233 6.957389682272576 0.02187735353773526 0.017873599109017993 215.4896340624991 -2.3334263836487974 -0.1153268637219027 KPENSAESNTEETKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPENSAESNTEETKR 15 2 J3KND1;E9PRZ1;Q96ER3 J3KND1 SAAL1 Protein SAAL1 0 60.55 0.054323 75897000.0 41638.0 38726.0 31504.0 39309.0 38432.0 40550.0 40348.0 42791.0 48752.0 45410.0 False True 41413.82563441669 40014.97149963867 35939.489362323104 44285.51536955741 43326.087395689334 37746.87394443259 38396.21309567199 45984.2817082952 36737.72284333098 42511.894922543055 0.9741703048022898 0.9412652993367199 0.8453984332574467 1.0417205690371107 1.0191521096537743 0.8879132302431505 0.9031875235302999 1.0816803577464345 0.8641751422811744 1.0 15.37557894655822 2.855810613757634 0.006826563614992258 1.9164398032576047 1.6269429616218647e-05 0.00964114688044948 0.0755962901899722 24664.03936002092 60.663045278759526 8339.787525015849 8687.3885702101 717.48134525595 -2.855810613757634 -1.9164235338279885 KPESPYGNLCDAPDS(ph)PRPVK ddPTM_BT-474_Trastuzumab_2h_R1 4 KPESPYGNLCDAPDSPRPVK 20 2 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 KPESPYGNLCDAPDS(1)PRPVK;KPESPYGNLCDAPDS(1)PRPVK;KPESPYGNLCDAPDS(1)PRPVK;KPESPYGNLCDAPDS(1)PRPVK 162.26 1.1145e-11 1837860000.0 1680490.0 1462400.0 1497500.0 1318400.0 1379320.0 1885410.0 1728440.0 1558660.0 2126790.0 1841030.0 True False 1671442.4285599904 1511075.0999605313 1708334.9834966646 1485309.3048214032 1554968.226129846 1755076.0444777482 1644828.753917995 1674975.1239151086 1602671.1020259243 1723533.8892149196 0.9697763641429428 0.8767307155467859 0.9911815451884278 0.8617813169301654 0.9021976509194976 1.018300861654189 0.954335023065444 0.9718260455430152 0.9298750155449226 1.0 20.716938235491863 2.761617790855759 24.929002187925942 0.9713376995536276 0.9185942399538414 0.28818079863802026 0.04263002444124374 1003.9304880186795 1085430.0867434095 0.0123454544183364 0.013085326393975217 577.5875067585916 -2.761617790855759 -0.05274345959978621 KPETEAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPETEAAR 8 1 P61964;V9GYQ5;V9GZ59 P61964 WDR5 WD repeat-containing protein 5 0 ; 73.985 0.067585 423840000.0 248970.0 303040.0 282900.0 258310.0 262340.0 210820.0 263610.0 213095.0 322130.0 258860.0 False True 247629.57318316717 313126.5032084518 322729.86098911957 291012.0195148789 295747.44398899714 196246.50961689948 250858.1772120079 228997.23097448467 242745.37782085285 242339.3331788042 1.021829885949466 1.2920993843678648 1.331727114850981 1.2008451772876785 1.2203856473054957 0.809800485305882 1.035152543837852 0.9449445451990438 1.0016755210007493 1.0 17.886669056595686 2.7634562061040304 23.393178818214878 0.960544989946686 1.2236297169996153 0.6445013252013941 0.0945557876442679 204.21247796380567 191887.89930202637 0.02805140699322628 0.029736365756256974 580.0376790542387 -2.7634562061040304 0.2630847270529293 KPEVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPEVLR 6 1 A0A087WX72;H0Y3S8;Q5JRU8;Q5JRU2;F8VVS7;P55211-3;P55211-2;P55211-4;P55211 A0A087WX72 CASP9 Caspase;Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10 0 ; 82.305 0.095553 1921700000.0 2420700.0 2983300.0 2684400.0 2479200.0 2679700.0 3431700.0 2809900.0 2514100.0 3058000.0 2759100.0 False True 2407667.2201650552 3082597.337057071 3062340.186776923 2793066.465801895 3020943.911173728 3194474.65635288 2673974.402139604 2701714.908341124 2304396.8751006327 2583011.875815645 0.9321162022937969 1.1934119877337654 1.1855695343289583 1.0813215734518915 1.1695431753366585 1.2367247267665589 1.0352156825818835 1.0459552794305276 0.8921356098577622 1.0 21.300622845819557 1.6948073425421863 2.001832944360743 0.954878128610441 1.1350313070735578 0.38779018925090736 0.08686069053619937 0.28832264798218876 2.4115700199192025 0.06024036718400057 0.023968986528230145 49.523045279391965 -1.6948073425421863 0.18015317846311685 KPGADLSDYFNYGFNEDTWK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGADLSDYFNYGFNEDTWK 20 1 Q6UN15;Q6UN15-5;Q6UN15-3;A0A0B4J203;Q6UN15-4 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 0 ; 155.01 5.5824e-08 858480000.0 1046450.0 960250.0 853750.0 797450.0 869130.0 1042670.0 1117260.0 1047740.0 1357720.0 1140200.0 False True 1040816.0294715258 992211.3407666163 973950.5790719711 898407.0882356103 979808.5537628911 970592.6770811726 1063213.8654523266 1125927.679115917 1023128.0985159031 1067431.459825667 0.9750659116244447 0.9295316637273031 0.9124244653900652 0.8416531852849252 0.9179123818618887 0.9092786877760656 0.99604883823264 1.0548009136809624 0.9584953573346999 1.0 20.025712006154308 2.1908837191526076 4.738996792824078 1.0136015235670568 0.9115139033508937 0.5611164673876724 0.03780197711521625 0.1372126644277532 6.643603484271191 0.01494343529633858 0.01109244479581151 155.19714193373704 -2.1908837191526076 -0.10208762021616313 KPGDGEVS(ph)PSTEDAPFQHSPLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGDGEVSPSTEDAPFQHSPLGK 23 1 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 KPGDGEVS(0.997)PS(0.002)T(0.002)EDAPFQHSPLGK;KPGDGEVS(0.946)PS(0.027)T(0.027)EDAPFQHSPLGK 181.62 1.9714e-17 1631110000.0 721540.0 586670.0 610840.0 574350.0 602540.0 896150.0 743920.0 822590.0 1095710.0 760880.0 True False 717655.3088106312 606196.9563004962 696840.9624835406 647062.6511105674 679269.8974656174 834201.2598101905 707933.7475496256 883975.8428273826 825686.952261779 712319.9869778593 1.0074900633567898 0.8510177551979015 0.978269563149574 0.9083876108205844 0.9536021870557604 1.1711046651230912 0.9938423187494105 1.2409813833496417 1.159151739887152 1.0 19.44216594585497 2.794033392290503 6.184952785754976 1.1270414889731422 0.9339431457866879 0.5322604063059371 0.08063936666161206 0.15682224942470127 13.389070966122544 0.023940980749947376 0.02527511302090935 622.3481348003718 -2.794033392290503 -0.19309834318645425 KPGDLSDELR ddPTM_BT-474_Trastuzumab_2h_R1 5 KPGDLSDELR 10 1 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;;;; 132.32 0.00036348 5036510000.0 8577860.0 9325540.0 8051030.0 8038700.0 8096730.0 9256240.0 9179370.0 8912660.0 11773020.0 9399980.0 False True 8531677.75484983 9635934.96149203 9184545.043192757 9056398.595773512 9127800.572421398 8616377.915645234 8735328.804501295 9577767.946770445 8871716.971385634 8800065.228672232 0.969501649493694 1.094984492853119 1.0436905641639813 1.0291285758048814 1.0372423766452712 0.979126596422432 0.992643642690282 1.0883746538110097 1.0081421831374553 1.0 23.06908278679379 2.956942547537547 24.975845588688433 1.0215566192599683 1.0385601899902903 0.04540931235857237 0.03976633221542393 1910.826721712724 1108386.4105083526 0.012530426898664205 0.013290765692590589 905.6127901968721 -2.956942547537547 0.017003570730321993 KPGGFDISLFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGGFDISLFYR 12 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 170.95 6.377100000000001e-05 3797900000.0 1803400.0 2245200.0 2488700.0 1916040.0 1648470.0 1724750.0 2095500.0 1744880.0 2973000.0 1906500.0 False True 1793690.6947765753 2319930.124747937 2839087.3278318136 2158610.467543995 1858392.8832528074 1605522.092124785 1994132.6594126264 1875091.8059211087 2240343.986158988 1784825.5377632305 1.0049669599777549 1.2998077827008838 1.5906805834870559 1.2094237906575436 1.0412182277388145 0.8995400716514 1.1172703534440138 1.0505742809300012 1.2552173524851173 1.0 20.767351630634725 3.4046588293203186 4.906201693696416 1.060499165134406 1.3136731055829545 0.3215041510364294 0.1563312524121204 0.22787771610180507 10.257185330989174 0.044459797763685055 0.06127460347967753 2538.977365979337 -3.4046588293203186 0.25317394044854846 KPGINVASDWSIHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGINVASDWSIHLR 15 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 214.53 1.5981e-12 2076800000.0 1550790.0 2258300.0 2250100.0 2203500.0 2342900.0 2419800.0 2359100.0 2184600.0 2452400.0 2467200.0 False True 1542440.7189489664 2333466.150328819 2566894.521780195 2482462.8740700525 2641254.4275437254 2252524.921596495 2244981.320362835 2347625.9451740244 1848038.880476391 2309741.183723812 0.6677980761732845 1.0102716991722671 1.1113342654443192 1.0747796729622212 1.143528307914327 0.9752282798910518 0.9719622857239054 1.0164021673584804 0.8001064766472861 1.0 21.139299769936283 4.737656474282226 6.785996893192885 1.0184419081484022 0.6620010177276359 0.5713322553163749 0.08916131081317434 0.0794906703846206 25.59358987743616 0.021638234824790072 0.1310703709001427 54658.344588313725 -4.737656474282226 -0.3564408904207663 KPGMFFNPEESELDLTYGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGMFFNPEESELDLTYGNR 20 1 P11413;P11413-3;P11413-2 P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 226.32 7.215699999999998e-25 2594600000.0 1693130.0 1866270.0 1869580.0 1687840.0 1840230.0 1896620.0 1854670.0 1664840.0 2326650.0 1912190.0 False True 1684014.3762044257 1928387.66876596 2132800.6133193253 1901520.3709418643 2074572.3826022435 1765511.1235632496 1764952.5265725653 1789078.8146862243 1753278.2830127205 1790152.3970917787 0.9407100640929894 1.0772198344111672 1.191407288443264 1.0622114486068395 1.1588803198948447 0.9862350973198927 0.9859230585283397 0.9994002843516013 0.979401689968428 1.0 20.77165097981357 2.7110754991015247 24.34784984962486 0.9905702958853538 1.0901180807094573 0.37250404010051763 0.06211897373587134 566.0649209410478 501450.8818186441 0.020193769038433545 0.01904359066682024 514.1330222953012 -2.7110754991015247 0.09954778482410342 KPGMTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPGMTR 6 1 P40926;P40926-2 P40926 MDH2 Malate dehydrogenase, mitochondrial 0 97.602 0.065557 1557700000.0 1652400.0 1879200.0 1980700.0 1776200.0 2318500.0 2748800.0 1935200.0 1558500.0 2460800.0 2211000.0 False True 1643503.6619988985 1941748.03599961 2259565.3434469705 2001066.7378821122 2613747.232173856 2558781.9259791956 1841586.9828180906 1674803.1839026453 1854368.8130306234 2069892.0870676658 0.7940045146639433 0.9380914339116141 1.0916343695231028 0.9667493056205381 1.2627456515748356 1.2361909792138588 0.889701929063845 0.8091258449493726 0.8958770481883596 1.0 20.981124124724836 2.0394780206929903 24.831810468836398 0.8726978151555671 1.0522235827940396 0.21441273989003518 0.13693442212326673 198.4076950327194 124798.27286550277 0.0547584952865042 0.040441768841700206 109.51611287085798 -2.0394780206929903 0.1795257676384725 KPGPPLS(ph)PEIR ddPTM_BT-474_Trastuzumab_2h_R1 6 KPGPPLSPEIR 11 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR 121.79 0.00024766 12838510000.0 10541160.0 12110250.0 10789550.0 9765190.0 10542740.0 11880630.0 11273730.0 10339410.0 13234630.0 11136700.0 True False 10484407.565792987 12513332.350449273 12308624.855550189 11001462.052752502 11885295.44728429 11059350.012094794 10728376.61006914 11110989.276660169 9973132.77145621 10425946.27139145 1.005607289053652 1.2002107074717585 1.1805762791359058 1.0552003402262158 1.1399728272048804 1.0607526381026333 1.0290074714376338 1.0657055951984389 0.956568594528657 1.0 23.313674994556695 2.1473234125881957 0.7800790143120863 0.9914712776700506 1.1275204724872299 0.4159166608853121 0.05819905325591466 0.626445703795549 0.7208590035802472 0.04721070655795378 0.02698829954135486 140.38587479575833 -2.1473234125881957 0.13604919481717925 KPGPPLS(ph)PEIRS(ph)PAGS(ph)PELR ddPTM_BT-474_Trastuzumab_2h_R1 5 KPGPPLSPEIRSPAGSPELR 20 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 3 KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR 117.8 5.5334e-05 1500680000.0 1483660.0 1467570.0 1189200.0 1481240.0 1551980.0 1845980.0 1737160.0 1624170.0 2209960.0 1867840.0 True False 1475672.1394101223 1516417.1802852014 1356629.023288302 1668764.8321250412 1749615.453693847 1718371.7475695102 1653126.9342043586 1745373.8127681506 1665344.9699468273 1748632.8520617213 0.8439005007084447 0.8672015846535615 0.7758226786650907 0.9543254492545351 1.000561925638631 0.9826944206975571 0.9453825211251426 0.9981362358086043 0.9523697144219305 1.0 20.737795978016123 3.6178528380369306 5.574150898708774 0.978562900643338 0.8335635062806094 0.8539672430876146 0.028006835969897708 0.07519824411980004 3.1224679556804724 0.007133609006554136 0.011152982902422502 4148.134580561416 -3.6178528380369306 -0.14499939436272857 KPGPSGPSES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 KPGPSGPSESPK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KPGPSGPSES(1)PK;KPGPSGPS(0.001)ES(0.999)PK;KPGPSGPS(0.007)ES(0.993)PK 137.93 0.00011491 903990000.0 1845288.0 1159119.0 1092855.0 987245.0 943283.0 1738872.0 1748916.0 1389395.0 2737794.0 1692152.0 True False 1835353.1744387718 1197699.575212768 1246719.484734055 1112230.1157754892 1063404.4987736251 1618667.8715043967 1664314.2515720776 1493078.710104854 2063101.353260064 1584157.4106357868 1.1585674265174002 0.7560483365930678 0.7869921741133639 0.7020957060883906 0.6712745157988042 1.0217847422465167 1.0505990379479528 0.9425065338081655 1.3023335556231483 1.0 20.59528426601728 2.6180234068428123 6.503475478595735 1.0522866427835253 0.8044729940675209 0.3968668587726404 0.15290469269209025 0.25998695120895077 12.846341905404614 0.04962240166598256 0.04666965980922376 414.9764077027681 -2.6180234068428123 -0.24781364871600442 KPGQSFQEQVEHYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGQSFQEQVEHYR 14 1 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 ; 190.24 4.0655e-07 1050790000.0 1287160.0 1445690.0 1394150.0 1224650.0 1180240.0 1268910.0 1457460.0 1339210.0 1740750.0 1340330.0 False True 1280230.0735769211 1493808.9177119401 1590434.2018309664 1379690.5644338073 1330536.568169452 1181193.2383928471 1386957.0917621204 1439148.6505705891 1311765.4873549475 1254788.9918857543 1.0202751871873954 1.190486151354401 1.2674913568063657 1.099539901414297 1.0603667841952142 0.9413481039690155 1.105330936700152 1.1469248294948544 1.0454072324810295 1.0 20.25901334708223 3.4890522754605544 22.316416501505678 1.0635289941046528 1.1660229777987785 0.27575821755936347 0.07755092897925057 194.56213156914484 363918.2075679592 0.02206853991269418 0.03222668292003031 3083.5590918995417 -3.4890522754605544 0.10249398369412566 KPGTNLTEEDLVDIVDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPGTNLTEEDLVDIVDTR 18 1 Q49AR2;Q49AR2-2 Q49AR2 C5orf22 UPF0489 protein C5orf22 0 ; 203.81 1.8308e-15 491360000.0 548060.0 654140.0 565530.0 592700.0 564160.0 695830.0 646200.0 582290.0 710660.0 648320.0 False True 545109.3058551908 675912.654464019 645151.7083251204 667735.7592291004 636002.4319617006 647728.9099076327 614940.8372762766 625743.4366087081 535527.3653561205 606943.6625453222 0.8981217524690539 1.113633268085317 1.062951552405319 1.100161020594294 1.0478772103732255 1.067197748125865 1.0131761401007415 1.0309744960257856 0.8823345532768145 1.0 19.211203083935022 1.3824270519944635 5.699467239113855 0.9417540787705189 1.047449943610122 0.2954670327490989 0.06190203409919271 0.2282327481933398 10.274279212907652 0.04026013070307124 0.014525405648883676 24.122763109444303 -1.3824270519944635 0.10569586483960303 KPGTPLPPPATSPSS(ph)PRPLS(ph)PVPHVNNVVNAPLSINIPR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPGTPLPPPATSPSSPRPLSPVPHVNNVVNAPLSINIPR 39 2 Q06190;Q06190-2 Q06190 PPP2R3A Serine/threonine-protein phosphatase 2A regulatory subunit B subunit alpha 2 KPGTPLPPPAT(0.011)S(0.012)PS(0.461)S(0.515)PRPLS(1)PVPHVNNVVNAPLSINIPR;KPGTPLPPPAT(0.006)S(0.087)PS(0.425)S(0.491)PRPLS(0.991)PVPHVNNVVNAPLSINIPR;KPGTPLPPPAT(0.067)S(0.073)PS(0.411)S(0.449)PRPLS(0.999)PVPHVNNVVNAPLSINIPR 153.4 6.4005e-14 925300000.0 468440.0 518540.0 475060.0 480110.0 449370.0 558220.0 575550.0 441460.0 525050.0 525150.0 True False 465917.9710885772 535799.2904359509 541944.3187044568 540891.876773212 506594.60587533633 519631.565308537 547708.4476854866 474403.98688845814 395658.4628095448 491634.4773964655 0.9476918168065135 1.089832619700245 1.102331800597907 1.100191100586756 1.030429372158956 1.0569469579520436 1.1140562203569824 0.9649526400197677 0.8047817657232298 1.0 18.90722656717091 1.5425672820704013 4.799009172846184 0.8967672460082172 1.0649201200085994 0.5184058432019152 0.06336486391282128 0.10751226024508903 5.404361519357232 0.03511099607553663 0.015375779540747682 34.87926158408532 -1.5425672820704013 0.16815287400038215 KPHLQGKPGRPLS(ph)PANVPALPGETVTSPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPHLQGKPGRPLSPANVPALPGETVTSPVR 30 3 Q8IY33;Q8IY33-5;Q8IY33-3 Q8IY33 MICALL2 MICAL-like protein 2 1 KPHLQGKPGRPLS(1)PANVPALPGETVTSPVR;KPHLQGKPGRPLS(1)PANVPALPGETVTSPVR 159.54 3.3115e-12 3145600000.0 2066740.0 1822540.0 1841640.0 1658560.0 1640710.0 2502550.0 2540400.0 2286110.0 2890600.0 2511310.0 True False 2055612.9014764016 1883202.142151306 2100926.9041781602 1868533.525944013 1849644.6932499309 2329554.608869045 2417511.146729579 2456711.1368313627 2178250.3620555555 2351036.045759339 0.8743434219922727 0.8010094722061432 0.8936174789696182 0.7947702585480831 0.7867359994697706 0.990862991263345 1.0282748114773248 1.0449483074760315 0.9265065782315656 1.0 21.164865227685414 2.6866512784319396 6.678742513290805 1.0079313058530415 0.8301467911564308 0.789775480197102 0.0432144891876864 0.09941770399290877 10.426335645002206 0.01396162716417439 0.013221664961864015 486.016796396918 -2.6866512784319396 -0.17778451469661072 KPHQQATPDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPHQQATPDDR 11 1 A0A087WWW8;Q9Y6J0 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 0 57.019 0.07485399999999999 18697000.0 24624.0 28087.0 20835.0 24305.0 22224.0 23921.0 21896.0 16107.0 35311.0 21721.0 False True 24491.42711998358 29021.85881604995 23768.386898933546 27382.01050795219 25054.09466803182 22267.3975739771 20836.80682915718 17308.986129688736 26609.077193158446 20334.747183716307 1.2044126685575842 1.4272052931786692 1.1688557858229403 1.3465626231084498 1.2320829190389286 1.095041771249973 1.024689741205286 0.851202425744907 1.3085521522719745 1.0 14.311659433832846 2.6839396385460685 2.323415644480201 1.0158485075138814 1.288946270048459 0.4333393273390179 0.12566047511672182 0.2509491868089731 2.6711954595846144 0.04407825118963664 0.04227071939566304 482.99166762607854 -2.6839396385460685 0.2730977625345776 KPIDSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPIDSLR 7 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 83.005 0.036801 834690000.0 2215360.0 2074890.0 1682130.0 1687370.0 1619490.0 1954650.0 1890990.0 1514940.0 2603200.0 1879510.0 False True 2203432.747909632 2143951.459352508 1918959.2826639358 1900990.8689900544 1825722.4520307276 1819529.646251175 1799515.589416694 1627992.5155094482 1961676.2410928605 1759558.062670533 1.2522648696033465 1.2184601945437197 1.0905916226211227 1.0803797324567195 1.0376028451483863 1.0340833217459282 1.0227088424041637 0.9252280729165573 1.1148687177253853 1.0 20.746781690882475 4.405094043015022 0.7185701927681563 1.004233535826932 1.3592181414258326 0.7584652013913694 0.0460141556075524 0.8814152540273786 0.4682838103986102 0.019019100455024474 0.23566789759534612 25415.229925519427 -4.405094043015022 0.35498460559890055 KPIDSLRDS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 KPIDSLRDSR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R 159.0 6.155599999999998e-06 17564890000.0 10238000.0 10805100.0 9662400.0 9382300.0 9379500.0 10768300.0 10992900.0 10178400.0 13065600.0 11071500.0 True False 10182879.745548723 11164741.221679127 11022781.932913627 10570098.218011111 10573923.728347939 10023912.766851634 10461131.430043919 10937963.892867945 9845757.95007026 10364907.391211968 0.9824380827736503 1.0771674845011456 1.0634713381288334 1.0197966869412762 1.0201657698662303 0.9671010447570954 1.0092836371035534 1.0552881448937836 0.9499127757203237 1.0 23.305203890467247 3.4152754331412747 2.841166657723547 1.0054444891099883 1.0442908172376437 0.1972097039426931 0.03553892692427558 0.4536659561657473 7.420424250302185 0.010443461934208568 0.015375591033693957 2601.809128827889 -3.4152754331412747 0.03884632812765543 KPIET(ph)GSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPIETGSPK 9 1 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 KPIET(0.5)GS(0.5)PK 72.49600000000002 0.0273 3437000000.0 3425700.0 3027100.0 2645100.0 2830100.0 2885600.0 3290400.0 3621200.0 3368300.0 5071700.0 3162300.0 True False 3407256.4118310483 3127855.1935794093 3017507.0883786436 3188390.3698233124 3253064.0557088144 3062942.3927684557 3446028.721672628 3619659.649880831 3821847.492298202 2960479.3066187613 1.150913774068079 1.0565367528786453 1.0192630232653155 1.0769845148706187 1.098830195649711 1.0346103031088976 1.164010406682567 1.2226600070428921 1.2909556515911713 1.0 21.497399338861495 2.1039811835981035 5.158067047230823 1.1953056605867567 1.0714178167749497 0.2563400968634224 0.07717802741393248 0.21732828988320976 9.128956101968035 0.027993814578084943 0.020359988972586854 127.05190570417075 -2.1039811835981035 -0.12388784381180695 KPIETGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 7 KPIETGSPK 9 1 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 KPIET(0.095)GS(0.905)PK;KPIET(0.001)GS(0.999)PK;KPIET(0.293)GS(0.707)PK;KPIET(0.001)GS(0.999)PK;KPIETGS(1)PK;KPIET(0.019)GS(0.981)PK;KPIET(0.011)GS(0.989)PK 125.03 0.00031419 57254090000.0 37372870.0 27437700.0 23581620.0 21701410.0 22370560.0 29588910.0 32008860.0 31012440.0 50166200.0 29245250.0 True False 37171658.62043624 28350947.258060098 26901707.1208845 24448806.280904286 25219318.21530268 27543498.296502084 30460469.15608035 33326745.750779472 37803412.20264008 27378793.10688181 1.357680686483326 1.035507560445896 0.9825746159030878 0.8929833461051628 0.9211260013124416 1.0060157943769579 1.1125570450519218 1.21724670699245 1.3807552456772825 1.0 24.70655551631894 1.951131613324205 2.9042513866303206 1.2214040806526916 1.0197580895262466 0.19724744732081112 0.14719062931330848 0.37048744665797834 5.770859390972231 0.07618260603266488 0.04208965441475832 89.35762417694369 -1.951131613324205 -0.201645991126445 KPIKS(ph)PSKDASSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPIKSPSKDASSGK 14 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 KPIKS(0.864)PS(0.103)KDAS(0.032)S(0.002)GK 99.891 0.0023759 875710000.0 789680.0 478780.0 447740.0 440020.0 482150.0 775200.0 720460.0 668060.0 1338300.0 669350.0 True False 785428.4506216967 494715.90287137846 510777.90017415374 495726.4868837329 543548.9445730539 721612.2486245162 685608.5973755283 717914.0295399426 1008493.8973012366 626631.5099406334 1.253413590223236 0.7894845615380042 0.8151168462986236 0.7910972860759868 0.8674140000150156 1.1515735119877408 1.0941176536757342 1.145671767460205 1.6093890608801025 1.0 19.257257791372272 2.3370509763585106 1.337337467569233 1.2555520852261757 0.887342672285786 0.360116073181986 0.196200311491784 0.4544358839517927 1.6151748875392211 0.11023459619693003 0.0704332963744014 217.29562198537843 -2.3370509763585106 -0.36820941294038967 KPITDDDVDR ddPTM_BT-474_Trastuzumab_2h_R1 6 KPITDDDVDR 10 1 P53618 P53618 COPB1 Coatomer subunit beta 0 ;;;;; 138.94 8.2587e-05 8336640000.0 7333110.0 7816020.0 7032550.0 7032930.0 7039970.0 7940730.0 7905060.0 7386420.0 9403640.0 7695480.0 False True 7293629.3505451195 8076171.500816143 8022671.911979612 7923298.216897437 7936468.4503286565 7391806.025567788 7522662.047538233 7937632.167880776 7086238.924320253 7204347.877968098 1.0123927209081693 1.1210135376047294 1.1135875235167452 1.09979395097341 1.1016220461257134 1.026020141000265 1.0441836200808103 1.1017835760201369 0.9836058786099101 1.0 22.780436415990625 2.74534908811068 24.618571564000593 1.043750778541964 1.0933124656338582 0.311382737670839 0.04129334106343687 637.097233248016 2310447.844779035 0.012744503509049777 0.01320887845302188 556.351275569998 -2.74534908811068 0.049561687091894235 KPLAAPGDGEGLGQTAQPS(ph)PPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPLAAPGDGEGLGQTAQPSPPAR 23 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 KPLAAPGDGEGLGQTAQPS(1)PPAR;KPLAAPGDGEGLGQTAQPS(1)PPAR;KPLAAPGDGEGLGQT(0.004)AQPS(0.996)PPAR;KPLAAPGDGEGLGQTAQPS(1)PPAR 242.41 1.4934999999999999e-37 5189190000.0 1975270.0 1981700.0 1805160.0 1820800.0 1918680.0 2019680.0 1993820.0 1831940.0 2247140.0 2006230.0 True False 1964635.3657931273 2047659.6865370534 2059310.8372680037 2051313.093309168 2163012.5250926614 1880064.2754153276 1897371.309467948 1968648.6652028314 1693362.4571333013 1878190.6837800823 1.0460255088897923 1.0902299240543003 1.0964333148130603 1.0921750975681852 1.1516469247623682 1.000997551340993 1.010212288801935 1.048162299070024 0.9015924057962037 1.0 20.840912109727313 2.713255056776674 24.00684131596563 1.0010343005598614 1.0949094765802463 0.5948561189108572 0.04223212536397909 354.8883309570897 336674.264561849 0.013598440745974136 0.012826313251749578 516.7197444822633 -2.713255056776674 0.09387517602038487 KPLFFGEGTVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLFFGEGTVLR 12 1 P49902-2;P49902 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 0 ; 110.98 0.0022941 913670000.0 340470.0 385800.0 412170.0 407630.0 331000.0 400770.0 383210.0 377280.0 535040.0 421710.0 False True 338636.94734977285 398641.11977897474 470199.9533541362 459235.91620475496 373150.88800929376 373065.7132111034 364672.668295639 405434.54938902124 403186.5611686862 394796.10675590485 0.8577514862859218 1.009739237437433 1.1909944027002581 1.163223011438388 0.9451736773078314 0.9449579335435622 0.9236987448843039 1.0269466756410897 1.021252627037604 1.0 18.590748237301934 3.1983078099349584 24.9993721690055 0.9765436954037214 1.0618474928429387 0.15236167957397995 0.09010566326717243 289.91659002296734 180054.43168283204 0.028048663418400843 0.033524975173174515 1578.7298115444992 -3.1983078099349584 0.08530379743921723 KPLFHGDSEIDQLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLFHGDSEIDQLFR 15 1 P06493;A0A024QZP7;A0A087WZZ9;P06493-2 P06493 CDK1;CDC2 Cyclin-dependent kinase 1 0 ; 226.93 5.1867e-13 4745500000.0 3289100.0 3843600.0 3665700.0 3435300.0 3393300.0 4467300.0 4292200.0 3614300.0 4858200.0 4529700.0 False True 3271391.851053366 3971531.9024947356 4181798.6971644205 3870208.6277707536 3825416.6413351493 4158486.065893063 4084569.8882037047 3884017.4190435214 3660961.70654477 4240610.667928725 0.7714435743404943 0.9365471658435889 0.9861312496313107 0.912653608368417 0.902090981911251 0.9806337793146725 0.9632032289818211 0.9159099297697667 0.8633100261319021 1.0 22.015840603960463 4.738221762729686 8.240024845575691 0.9382329032759242 0.7702837057023262 0.6062051144463301 0.040747197703391524 0.059325434600007686 56.323109402779956 0.009551049184815327 0.056009026653486435 54729.535564470236 -4.738221762729686 -0.16794919757359805 KPLHLLDCIHVLLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLHLLDCIHVLLIR 15 1 O75694;O75694-2;E9PF10 O75694 NUP155 Nuclear pore complex protein Nup155 0 ; 170.45 4.6343e-07 175688000.0 86903.0 90147.0 78699.0 79253.0 73577.0 79185.0 93349.0 65698.0 110003.0 86631.0 False True 86435.12390383088 93147.48839998776 89779.13513602939 89286.42167400692 82946.59482495408 73711.12733144006 88833.35224218997 70600.71836768424 82894.23461468115 81102.13541146945 1.065756449756898 1.1485207871211596 1.1069885482119233 1.1009133264002817 1.0227424272385284 0.9088678979593902 1.095326920696926 0.8705161462086471 1.0220968189569797 1.0 16.30745228051455 3.126525464902001 3.2788864136317692 0.9720433377651891 1.1099190745331042 0.4893689114479841 0.06042290064591213 0.18328489976609325 3.897689575154338 0.01726629022963374 0.02131676571780823 1338.2136791515306 -3.126525464902001 0.1378757367679151 KPLHYAADCGQLEILEFLLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLHYAADCGQLEILEFLLLK 21 1 P58546 P58546 MTPN Myotrophin 0 ; 116.98 7.6092e-05 2276500000.0 2944000.0 2943200.0 2797100.0 2619400.0 2606400.0 3147300.0 3383300.0 3102500.0 4223300.0 3116600.0 False True 2928149.8311091512 3041162.6327980272 3190907.367170962 2951015.771426864 2938309.5906568663 2929734.5589472908 3219636.8535388885 3334024.304175781 3182524.304320636 2917695.9197444962 1.0035829338122289 1.0423165115384412 1.0936394521367363 1.011419919209842 1.0070650511497357 1.0041260774028327 1.1034860870014287 1.1426908066786283 1.0907662730663623 1.0 21.476398103732787 2.227045873883994 24.7598363664866 1.1013785640532108 1.0291313994923317 0.2643498325172242 0.04302920705065723 200.77642374312092 431720.4943952165 0.01599189068750885 0.011916151023786676 168.67311829002387 -2.227045873883994 -0.0722471645608791 KPLPDHVSIVEPK ddPTM_BT-474_Trastuzumab_2h_R1 4 KPLPDHVSIVEPK 13 1 P23396;P23396-2;E9PPU1;E9PL09;H0YEU2;E9PSF4 P23396 RPS3 40S ribosomal protein S3 0 ;;; 156.74 2.8113000000000007e-05 6510370000.0 6801440.0 9883150.0 10268270.0 9915420.0 10013640.0 11753810.0 12194120.0 11983600.0 13554290.0 12467760.0 False True 6764821.802751031 10212104.673259674 11713953.162597194 11170711.155349096 11288817.698505674 10941296.780192615 11604243.829537906 12877877.0834878 10214016.847680757 11672056.882613633 0.5795740948476458 0.8749190289220863 1.003589451319927 0.9570473540091012 0.967166096947418 0.937392345687628 0.9941901368578199 1.103308286877039 0.87508285389658 1.0 23.47655548342856 4.727538719976613 2.203443050970705 0.9879863928234089 0.477677036898979 0.8238667131155163 0.05559503833233081 0.2432853320051208 1.3782920274703525 0.014679962880548299 0.24104372200954674 53399.68804996672 -4.727538719976613 -0.5103093559244299 KPLPTAAAQCS(ph)FEDPDSAVDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLPTAAAQCSFEDPDSAVDDR 22 1 O14795;O14795-2;A0A1B0GUS7;A0A0U1RRL2 O14795 UNC13B Protein unc-13 homolog B 1 KPLPTAAAQCS(1)FEDPDSAVDDR;KPLPT(0.001)AAAQCS(0.999)FEDPDSAVDDR 137.25 2.0095e-06 1386260000.0 685228.0 560527.0 475211.0 586996.0 618708.0 607176.0 443831.0 487735.0 595627.0 610042.0 True False 681538.8085839875 579183.8023492726 542116.578191942 661309.633413944 697496.7964303737 565203.352258565 422361.1989309304 524132.26236814633 448842.70684289315 571108.5972767667 1.19336114328131 1.0141395263720616 0.949235540800702 1.157940252637214 1.2213032683385743 0.9896600313033987 0.7395462105541526 0.9177453550294656 0.7859148137204073 1.0 19.123405577040526 2.4675111206059923 9.553766901253148 0.8574772734025741 1.0970609403799656 0.5731001969426515 0.10006040355710824 0.12924590158141647 105.7527863894125 0.03422741856564751 0.029180284678306294 293.43446402383006 -2.4675111206059923 0.23958366697739153 KPLPTAAAQCS(ph)FEDPDSAVDDRDSDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLPTAAAQCSFEDPDSAVDDRDSDYR 27 2 O14795;O14795-2;A0A1B0GUS7;A0A0U1RRL2 O14795 UNC13B Protein unc-13 homolog B 1 KPLPTAAAQCS(1)FEDPDSAVDDRDSDYR;KPLPTAAAQCS(1)FEDPDSAVDDRDSDYR 217.58 1.784e-34 2499700000.0 956920.0 940420.0 801830.0 1027020.0 1022490.0 932000.0 741720.0 730620.0 1279860.0 1106760.0 True False 951768.0490438078 971721.3112041053 914720.6943687015 1157040.6266972662 1152698.0407269567 867573.0336920146 705840.169954441 785142.5744131862 964455.6522453566 1036125.6292550935 0.9185836371290871 0.9378412074438398 0.8828279781345876 1.1166991666146726 1.1125079895530343 0.8373241711198118 0.6812302968143872 0.7577677380470283 0.9308288734627065 1.0 19.982767508366976 2.5716830923110434 7.496644077715329 0.8041367616416372 0.9906839657655724 0.29885760192644995 0.11047695866948519 0.2933778620647655 20.513311159210488 0.03704315493613225 0.034836571309898985 372.9778939210171 -2.5716830923110434 0.18654720412393522 KPLS(ph)PVRDNIQLTPEAEEDIFNKPECGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLSPVRDNIQLTPEAEEDIFNKPECGR 28 3 Q9UQ84;H0YAZ2 Q9UQ84 EXO1 Exonuclease 1 1 KPLS(1)PVRDNIQLTPEAEEDIFNKPECGR;KPLS(1)PVRDNIQLTPEAEEDIFNKPECGR 222.52 1.5306999999999996e-34 820500000.0 266000.0 225435.0 209561.0 181220.0 177466.0 325970.0 297040.0 250140.0 480140.0 335940.0 True False 264567.88555537816 232938.46769666453 239065.36726313454 204162.43341909474 200065.24317660814 303436.461150843 282671.0403970059 268806.7169851832 361815.93054637674 314500.0215872961 0.8412332826563631 0.7406628035222808 0.7601441998527079 0.6491650855496847 0.636137454512307 0.9648217498344999 0.8987949793146346 0.8547112830978622 1.1504480308785834 1.0 18.262700590568034 2.726854822693936 24.752474240619147 0.9495166148261912 0.7240000318341654 0.6445484854908881 0.09130431838696017 466.16578609987187 985728.4935472397 0.030300677425209085 0.028788329245688384 533.1566404404858 -2.726854822693936 -0.22551658299202582 KPLSLAGDEETECQSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 KPLSLAGDEETECQSSPK 18 1 Q86TN4;Q86TN4-4;F5H1K3;Q86TN4-2 Q86TN4 TRPT1 tRNA 2-phosphotransferase 1 1 KPLSLAGDEETECQS(0.037)S(0.963)PK;KPLSLAGDEETECQS(0.003)S(0.997)PK;KPLSLAGDEETECQS(0.025)S(0.975)PK;KPLSLAGDEETECQS(0.004)S(0.996)PK 252.84 1.0513e-30 4346630000.0 3574780.0 2554360.0 2352670.0 2080550.0 2030750.0 3579430.0 3476070.0 3003520.0 5119300.0 3260790.0 True False 3555533.781675397 2639380.3284567716 2683905.4862257717 2343947.416676403 2289353.975301727 3331992.4291718905 3307919.214223072 3227657.913965529 3857717.1101055196 3052683.5904972283 1.1647239801542169 0.8646098589034781 0.8791954379355152 0.7678317608719532 0.7499480071987519 1.0914961640781013 1.0836102452675975 1.057318198326542 1.2637133838941905 1.0 21.5416466318211 2.7100549158245872 21.369111415996013 1.0976183127130323 0.8772536682275422 0.43214554019133333 0.12245710376336424 114.28566723351469 85672.63758444293 0.039960493020086696 0.03769138631543961 512.9262385720891 -2.7100549158245872 -0.2203646444854901 KPLSTHSTEYNLDSVPS(ph)PAEEFADFATFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLSTHSTEYNLDSVPSPAEEFADFATFSK 30 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9 Q6ULP2-7 AFTPH Aftiphilin 1 KPLSTHSTEYNLDSVPS(1)PAEEFADFATFSK;KPLSTHSTEYNLDSVPS(1)PAEEFADFATFSK 225.18 3.8068e-35 781310000.0 865740.0 1096480.0 1199960.0 1103210.0 1210050.0 1430410.0 1421030.0 1270310.0 1438280.0 1375400.0 True False 861078.9520327556 1132975.6739638422 1368903.9377607058 1242876.2728853314 1364142.694971737 1331529.1235229543 1352289.3500382355 1365106.9827034788 1083835.1659645985 1287620.7944608168 0.6687364445627232 0.8798985530815917 1.0631266158868815 0.9652502337893496 1.059428910157484 1.0341003572255323 1.0502232923354569 1.0601778012408605 0.8417347487918194 1.0 20.296276350276365 4.607100460836024 2.524934310619578 1.0168819848187063 0.6400484018196322 0.7203528299720763 0.06498239632068858 0.18300460594414636 1.769727270029569 0.015603869739744244 0.12897770408947484 40466.94888653844 -4.607100460836024 -0.3768335829990741 KPLTSSSAAPQRPISTQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPLTSSSAAPQRPISTQR 18 2 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 ; 232.54 1.0558e-20 3987700000.0 910780.0 1043080.0 946570.0 882650.0 1005110.0 979770.0 1045310.0 1034850.0 1117270.0 940860.0 False True 905876.4616771706 1077798.287244824 1079838.828266068 994393.3994998574 1133104.8007462877 912040.8060304988 994744.3618280169 1112075.761861825 841933.7791509766 880813.5092892282 1.0284543233313563 1.2236395966662141 1.225956251667215 1.1289488512753199 1.2864298614818541 1.0354527904169741 1.1293473037564161 1.262555297044903 0.9558592940182926 1.0 19.74847707053609 1.2252763659398487 24.989881643188607 0.9779294741724525 1.1703323158795187 0.4415695655987181 0.08402848280600292 223.67542882889256 420758.22931465536 0.0754306072347264 0.019301113759374044 16.798726752761436 -1.2252763659398487 0.19240284170706623 KPLVIIAEDVDGEALSTLVLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPLVIIAEDVDGEALSTLVLNR 22 1 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ;;; 236.04 2.8188e-30 1546985500.0 447764.0 537874.0 561646.0 498238.0 581926.0 873490.0 506285.0 466790.0 663910.0 603841.0 False True 445353.2883752577 555776.8109383007 640720.874885454 561314.8797145074 656030.8267543687 813107.692274288 481794.0603534818 501624.2401115914 500298.27643821517 565303.3504057112 0.787812929209836 0.9831479161399389 1.1334107155487696 0.9929445479345889 1.1604934346904958 1.438356400489632 0.852275260720999 0.8873540900678935 0.8850085110572179 1.0 19.108665721933203 KPLVLCGDLNVAHEEIDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 KPLVLCGDLNVAHEEIDLR 19 1 P27695;G3V3M6;G3V5Q1;H7C4A8 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;;;;; 229.46 5.1817e-20 26420970000.0 15653560.0 19053950.0 17061420.0 17292630.0 16332090.0 17916340.0 17904950.0 16299430.0 20247600.0 19544270.0 False True 15569282.972234003 19688149.207394008 19463519.63547887 19481875.184946682 18411884.853618447 16677825.58632785 17038819.164948747 17515776.233428497 15257850.283939693 18296937.955908608 0.850922870796872 1.0760351953336618 1.0637583011092595 1.0647615044601177 1.006282302426058 0.9115091075084562 0.9312388338424912 0.9573064233828343 0.833901843068364 1.0 24.12509889384361 2.817928853713254 4.991775820600038 0.9274109328989159 1.0230671138330316 0.2593783739105946 0.07149416310704901 0.28397285491824825 12.647826505067304 0.021603055745494894 0.02287229160125977 657.5501084234046 -2.817928853713254 0.09565618093411576 KPMS(ph)PITAQMSQLELQQAALEGLALPHDLAVQAANFYQPGFGKPQVDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPMSPITAQMSQLELQQAALEGLALPHDLAVQAANFYQPGFGKPQVDR 48 2 B1AKL4;Q9NRA8;B0QYZ7;H7C0J7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 KPMS(0.979)PIT(0.019)AQMS(0.002)QLELQQAALEGLALPHDLAVQAANFYQPGFGKPQVDR;KPMS(0.997)PIT(0.003)AQMSQLELQQAALEGLALPHDLAVQAANFYQPGFGKPQVDR;KPMS(0.994)PIT(0.006)AQMSQLELQQAALEGLALPHDLAVQAANFYQPGFGKPQVDR 231.81 3.0300999999999993e-51 1157490000.0 228931.0 179930.0 188607.0 170725.0 169354.0 267096.0 226691.0 228065.0 316708.0 276540.0 True False 227698.4609326255 185918.86128001823 215161.22619856792 192338.76749517152 190920.228060199 248632.28219635415 215725.09028628375 245084.3683906043 238659.557069775 258890.98044219433 0.8795148465338924 0.7181357224668958 0.8310881508157042 0.7429334431298091 0.7374541505235175 0.9603744470807056 0.8332661490092015 0.9466701697061525 0.9218535024361861 1.0 17.98198517819169 2.737730854458939 24.999454386806587 0.9223926384723058 0.7788631235518457 0.612356717689241 0.05962418328976756 50.59787620962277 1524416.4964890848 0.017653567276711815 0.01756138797895021 546.6770654353245 -2.737730854458939 -0.14352951492046007 KPMVLGHEASGTVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPMVLGHEASGTVEK 15 1 Q00796;A0A6I8PIS1;H0YKB3;Q00796-2 Q00796 SORD Sorbitol dehydrogenase 0 193.96 4.6375e-08 842420000.0 592180.0 584380.0 576030.0 543190.0 572860.0 652690.0 678350.0 631870.0 944690.0 773880.0 False True 588991.7686773825 603830.7350348308 657130.0170574852 611957.7983054743 645810.3253927612 607571.0765669962 645535.6189513506 679023.3479708474 711883.8076974547 724490.3158479991 0.812973970518821 0.8334559093837727 0.9070238796612896 0.8446735379605343 0.8913995277312371 0.8386186306104704 0.8910203557321068 0.9372428217705938 0.9825994801106641 1.0 19.466606880062436 1.5773438974094538 1.415660238283005 0.9995439974836026 0.8562936349160432 0.8125551087104498 0.026289661469147754 0.16026928125378803 0.620976570661676 0.02253354538136295 0.00788216521576074 37.78712910218724 -1.5773438974094538 -0.1432503625675594 KPNAGGS(ph)PAPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPNAGGSPAPVR 12 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 KPNAGGS(1)PAPVR;KPNAGGS(1)PAPVR;KPNAGGS(1)PAPVR 105.28 0.0012541 600850000.0 800160.0 708870.0 672230.0 586340.0 690100.0 867850.0 762390.0 777160.0 839810.0 758120.0 True False 795852.0274661325 732464.3094290356 766874.140872094 660570.5838812046 777980.1444568372 807857.5721991571 725510.283087373 835155.6255385174 632850.0783774572 709736.1325408126 1.1213350863468514 1.0320234180650456 1.0805059876643601 0.9307270034518346 1.0961540617520982 1.1382505908316598 1.0222253733793853 1.1767128475602764 0.8916695224630766 1.0 19.43692322999613 1.2247356555630744 24.999328182794677 0.945834756863175 1.0740584931634154 0.35505115121745623 0.0694900934052938 289.4278139307979 523349.78432225494 0.06394975369318266 0.01631966866912484 16.777824820704524 -1.2247356555630744 0.12822373630024042 KPNEGADGQWK ddPTM_BT-474_Trastuzumab_2h_R1 6 KPNEGADGQWK 11 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;;;; 166.7 3.224e-05 7181560000.0 9484220.0 8451380.0 8049860.0 7195030.0 7362400.0 10004290.0 9697980.0 9025270.0 12466050.0 9571120.0 False True 9433158.013315905 8732679.074332904 9183210.317362562 8105920.060276958 8299957.999636317 9312716.979865525 9228851.657518718 9698781.476792447 9393959.014011871 8960282.927351903 1.0527745708252711 0.9745985863544306 1.02487950345074 0.9046500122817617 0.9263053484952024 1.0393329156424058 1.0299732421782117 1.0824191105825716 1.0483998206503213 1.0 23.095112856455625 2.595491905792221 7.157511691069417 1.0483392398278935 0.9753222038750017 0.33136402754813965 0.044381229251433826 0.2815805886307947 15.5366814014623 0.01492536755590189 0.014039818398049079 393.9960844340372 -2.595491905792221 -0.07301703595289177 KPNFEVGSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPNFEVGSSR 10 1 Q6FI81-3;Q6FI81;H3BV90;H3BT65;H3BPG7;H3BUG4 Q6FI81-3 CIAPIN1 Anamorsin 0 ; 140.61 6.2518e-05 1314100000.0 1224530.0 1327100.0 1230210.0 1217480.0 1173470.0 1315770.0 1422910.0 1209560.0 1595490.0 1421640.0 False True 1217937.2665380733 1371271.7212511087 1403412.8748229907 1371612.843168964 1322904.4487983852 1224813.9168894223 1354078.4072559397 1299823.509221229 1202302.8679706715 1330909.71807276 0.9151163673984756 1.0303266274415634 1.0544763899201366 1.0305829347727242 0.9939851147183997 0.9202832470582821 1.017408159898877 0.9766428868694823 0.9033692155405408 1.0 20.343981279036544 2.993139030783921 24.229346557811944 0.9667549162095463 1.0125548844963368 0.1637382939791372 0.04673183541720758 374.2367397076435 1321619.0169422345 0.01373236003936048 0.015823174876080974 984.3261678713378 -2.993139030783921 0.04579996828679045 KPNIFYSGPAS(ph)PARPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPNIFYSGPASPARPR 16 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 KPNIFYSGPAS(1)PARPR;KPNIFYSGPAS(1)PARPR 179.69 2.0376e-09 11327100000.0 1293790.0 1432220.0 1243520.0 1275280.0 1094640.0 1562710.0 1659800.0 1546530.0 1793600.0 1686510.0 True False 1286824.3783935818 1479890.5769047262 1418596.8071303992 1436730.3172425954 1234035.9155604 1454683.535923655 1579509.1329482587 1661939.921720218 1351591.3130086653 1578875.4879061454 0.8150258764863894 0.9373067022956384 0.8984855474649855 0.9099706267198698 0.7815916612885918 0.9213415162032885 1.0004013267968037 1.0526098697777808 0.8560468025259566 1.0 20.59046597227458 2.4115031514158165 4.748560059357455 0.9888202448123309 0.8740420866393154 0.38882222428314905 0.06327428592525396 0.200130797425872 8.892518517318074 0.02228161057691372 0.01860907160271398 257.9307680855781 -2.4115031514158165 -0.11477815817301551 KPNVS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPNVSPEK 8 1 A0A0U1RR07;Q9HCH5-13;Q9HCH5;Q9HCH5-14;Q9HCH5-15;Q9HCH5-6 A0A0U1RR07 SYTL2 Synaptotagmin-like protein 2 1 KPNVS(1)PEK;KPNVS(1)PEK 91.914 0.0074416 709600000.0 1644630.0 1181430.0 1021780.0 970850.0 1041690.0 1548100.0 1412170.0 1456430.0 2151200.0 1349950.0 True False 1635775.4948155694 1220753.1833604823 1165637.7425290279 1093759.5104565069 1174343.046919639 1441083.4908354161 1343857.9420867236 1565116.2022016873 1621065.584603166 1263795.035249657 1.2943360665223924 0.965942379350563 0.9223313195709472 0.8654564070513535 0.9292195444395402 1.1402826017200935 1.063351180060025 1.2384256612406344 1.2826965919223854 1.0 20.26933107270761 2.386342408078683 1.9206589443998086 1.1816463215231154 0.9858492257589713 0.21222944199921 0.13405113831460955 0.4393904942320062 3.3105262708107746 0.06026895549502835 0.044881560372611276 243.41223725917823 -2.386342408078683 -0.19579709576414417 KPPAPPS(ph)PVQS(ph)QSPS(ph)TNWSPAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 KPPAPPS(0.977)PVQS(0.51)QS(0.51)PS(0.436)T(0.389)NWS(0.178)PAVPVKK 83.559 0.009568 1196700000.0 438470.0 337230.0 310160.0 303980.0 340250.0 469060.0 407620.0 397940.0 602390.0 444670.0 True False 436109.3262385967 348454.4966901599 353827.83204095165 342463.8368322283 383578.82068024826 436634.9862484724 387901.8633403839 427636.30349837616 453939.0561124495 416290.7798988601 1.0476074592489213 0.8370459148166064 0.8499535640133944 0.8226553490217381 0.9214204090069942 1.0488701824108502 0.9318050796960399 1.0272538431004226 1.0904374490896394 1.0 18.66723208013691 2.89967196665497 4.714476990436619 1.0138904494639136 0.8815296990795483 0.4440789043616379 0.06955788611753903 0.20878735352046263 7.540218318879233 0.021366442365622802 0.02294876658613121 793.7284855276167 -2.89967196665497 -0.13236075038436534 KPPAPPS(ph)PVQS(ph)QSPSTNWS(ph)PAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 KPPAPPS(1)PVQS(0.638)QS(0.361)PS(0.003)T(0.002)NWS(0.996)PAVPVKK;KPPAPPS(1)PVQS(0.496)QS(0.496)PS(0.042)T(0.04)NWS(0.927)PAVPVKK 126.04 7.8877e-05 13621700000.0 2788200.0 2194200.0 2041330.0 2145640.0 2241600.0 3082700.0 2971000.0 2852800.0 4454400.0 3423400.0 True False 2773188.6409981432 2267232.6205780893 2328731.520441563 2417277.8040025765 2527054.472995867 2869600.204895245 2827281.3796778396 3065690.422224878 3356672.8059019875 3204915.681079804 0.8652922313587349 0.7074234851052963 0.7266124142326776 0.754240686665474 0.7884932785952262 0.895374633983636 0.8821702849683922 0.9565588387623296 1.04735136269515 1.0 21.611854970446437 2.1873947191125143 0.8918920395852699 1.019539366755635 0.753673256049182 0.8199509918761463 0.04708056923470389 0.23052699040687746 0.34582872562635875 0.036503933259690195 0.020290094177032147 153.9553265084131 -2.1873947191125143 -0.26586611070645294 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 KPPAPPS(0.986)PVQS(0.046)QS(0.964)PS(0.044)T(0.008)NWS(0.952)PAVPVK 103.46 0.0018975 312340000.0 339440.0 258680.0 238030.0 232390.0 239660.0 335510.0 330710.0 341000.0 400970.0 335070.0 True False 337612.49275532906 267290.00742463756 271542.55500615103 261810.5501725165 270179.2804238893 312316.9834055875 314712.29386511573 366447.1515629141 302156.31622272776 313685.5457321403 1.0762768554328617 0.8520953899893098 0.865652111487548 0.8346273959211354 0.861306120412059 0.9956371520933214 1.0032731764244316 1.1681990341876558 0.9632459012974175 1.0 18.25895952742771 2.4496146215269015 2.430519427937568 1.0611339165319709 0.8909182058186598 0.36084643129593064 0.08292277278318884 0.260511658827373 3.132590199388183 0.032248735749172745 0.026571060210805374 281.58831013234015 -2.4496146215269015 -0.1702157107133111 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 KPPAPPS(0.926)PVQS(0.224)QS(0.845)PS(0.105)T(0.097)NWS(0.802)PAVPVKK 64.318 0.025812 1633800000.0 1487400.0 1231600.0 990100.0 988290.0 1132300.0 1735500.0 1536600.0 1444500.0 2143600.0 1683700.0 True False 1479392.0036656768 1272593.0614820772 1129497.4738965263 1113407.4126683443 1276491.6933320942 1615528.9699275657 1462268.787617963 1552295.925022374 1615338.5027683864 1576244.824511907 0.9385547096871698 0.8073574876771714 0.7165748977137999 0.7063670537431374 0.8098308546246088 1.0249226165915077 0.9276914124496889 0.9848063580497725 1.0248017805664071 1.0 20.588060202898596 2.7967863498280683 5.852942647237204 0.985474667690452 0.7854088232431308 0.6963394817401927 0.06476442403866715 0.12985416846038675 9.561816454227662 0.020997754805851032 0.022164114625070574 626.305679233966 -2.7967863498280683 -0.20006584444732123 KPPAPPS(ph)PVQSQS(ph)PSTNWSPAVPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KPPAPPS(0.998)PVQS(0.002)QS(0.453)PS(0.453)T(0.094)NWSPAVPVK;KPPAPPS(1)PVQS(0.053)QS(0.946)PS(0.001)TNWSPAVPVK 179.85 9.336299999999999e-17 5607160000.0 2886730.0 2483660.0 2287300.0 2243970.0 2317710.0 3012580.0 3033650.0 2973370.0 3175610.0 2781610.0 True False 2871188.1664258554 2566327.1216958277 2609331.958431996 2528056.3719205745 2612856.630356553 2804327.435450521 2886900.7598315957 3195257.9678669316 2393023.4664938934 2604085.2683438687 1.102570718911926 0.9855004184743712 1.0020147919701048 0.9708039911950938 1.0033683082959348 1.0768953956849505 1.108604543378716 1.2270174124901192 0.918949734705037 1.0 21.312345258304987 2.6403286958696226 3.877749146900043 1.0982364579700525 1.0083334888378248 0.032266028936316804 0.08332926847142852 0.39337331037237805 10.736553593532628 0.028050106298300445 0.026416290008262885 436.846334393792 -2.6403286958696226 -0.08990296913222773 KPPAPPS(ph)PVQSQSPS(ph)TNWSPAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KPPAPPS(0.847)PVQS(0.097)QS(0.091)PS(0.485)T(0.453)NWS(0.027)PAVPVKK 45.527 0.082652 7126100000.0 187130.0 208540.0 159680.0 157460.0 135270.0 211240.0 196840.0 194480.0 276360.0 209350.0 True False 186122.51287209755 215481.12783490773 182161.55603655893 177394.41985526265 152495.83269189467 196637.47600547303 187318.09719817765 208993.08514942994 208254.78103427435 195989.1037664478 0.9496574518443236 1.099454631374241 0.9294473648577597 0.9051238892681316 0.7780832187161676 1.003308205540844 0.955757711007225 1.0663505324177533 1.0625834652646968 1.0 17.58041392276155 1.8163297596324088 4.422596754175878 1.0485589830227033 0.9440419714957672 0.24754694871668215 0.07742971045025136 0.319664697245408 10.476782541638295 0.04049864167656468 0.022289909768735034 65.51334278198611 -1.8163297596324088 -0.10451701152693615 KPPAPPS(ph)PVQSQSPSTNWS(ph)PAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KPPAPPS(1)PVQSQSPST(0.001)NWS(0.999)PAVPVKK 222.6 1.3271e-34 2490000000.0 2228500.0 1633400.0 1674000.0 1432900.0 1403500.0 2185400.0 2169300.0 1974100.0 2792200.0 2324500.0 True False 2216502.0036096256 1687766.7315888507 1909684.649331163 1614304.9930814514 1582227.4058037568 2034328.4418782478 2064362.6714692486 2121417.366276682 2104099.72356311 2176148.419895426 1.0185435806424172 0.7755751933822399 0.8775525749401468 0.7418175057926547 0.7270769729390931 0.9348298228555599 0.9486313767001475 0.9748495768402717 0.9668916441205889 1.0 21.053345525427574 2.5531647992599296 6.8137335046997265 0.9669018299461879 0.8231924272918922 0.43997271967623475 0.07795058958233922 0.235965593879676 17.90425100471756 0.02520939087030144 0.023635386311362118 357.4084361719229 -2.5531647992599296 -0.14370940265429566 KPPAPPS(ph)PVQSQSPSTNWSPAVPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KPPAPPS(1)PVQSQSPSTNWSPAVPVK;KPPAPPS(1)PVQSQSPSTNWSPAVPVK 165.87 9.0317e-12 3057500000.0 1898560.0 1558970.0 1616390.0 1351290.0 1485710.0 2041910.0 1869160.0 1650030.0 2102500.0 2070200.0 True False 1888338.3639098457 1610859.3740327356 1843963.6620862577 1522363.175449114 1674906.3620069094 1900757.5678391194 1778741.589915392 1773163.617282566 1584367.0470565995 1938078.0636126113 0.9743355540539735 0.8311633077514254 0.9514393133623716 0.7855014738732466 0.86420995802659 0.9807435538979653 0.9177863489150622 0.9149082539933185 0.817493927000707 1.0 20.886195251387083 KPPAPPS(ph)PVQSQSPSTNWSPAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KPPAPPS(0.972)PVQS(0.028)QSPSTNWSPAVPVKK;KPPAPPS(1)PVQSQSPSTNWSPAVPVKK 233.08 3.8709e-45 7589000000.0 1039500.0 853100.0 913730.0 800520.0 840570.0 1143250.0 1069870.0 1007490.0 1368180.0 1160230.0 True False 1033903.4474993075 881494.9177901596 1042375.2417164654 901865.7499208363 947611.6070512747 1064219.8184210248 1018116.3007997075 1082674.0197305598 1031010.3716727219 1086183.128077121 0.9518684472015647 0.8115527621485682 0.9596680474698507 0.83030727195829 0.8724234270963492 0.9797793676882295 0.9373339306071595 0.9967693216218766 0.9492049222840795 1.0 20.05083592817166 2.737987379641247 24.9878759183954 0.9715103815261715 0.8821659952410358 0.46637349983744125 0.046710904733378675 42.84530401422295 1867630.5340401689 0.013541716682104783 0.01350822951453367 547.0000671419472 -2.737987379641247 -0.08934438628513575 KPPAPPSPVQSQSPST(ph)NWSPAVPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KPPAPPSPVQS(0.007)QS(0.24)PS(0.343)T(0.41)NWSPAVPVKK 159.75 9.0655e-10 398030000.0 329740.0 311640.0 293390.0 267550.0 284240.0 347630.0 392140.0 350770.0 425750.0 394740.0 True False 327964.7164775579 322012.74900964217 334696.76180840447 301421.80256748036 320436.2791775277 323599.1563329987 373170.6900797266 376946.2385739691 320829.617257716 369547.355246083 0.8874768330006446 0.8713707308098921 0.9056938361405092 0.8156513591249014 0.8671047827257429 0.8756635698759441 1.0098047916788115 1.020021475523642 0.8681691607401015 1.0 18.49539972324979 2.2499919704729594 23.622578996735303 0.9820673047242512 0.8694864951922121 0.561573116954568 0.04481571444575475 75.09476793919707 155181.07366510204 0.0155831683017299 0.012916163325470994 177.8246532322979 -2.2499919704729594 -0.11258080953203908 KPPLLNNADSVQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPLLNNADSVQAK 14 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 155.98 9.1349e-06 551040000.0 582430.0 541920.0 439390.0 449130.0 435120.0 631340.0 592710.0 539660.0 706990.0 652980.0 False True 579294.2615940567 559957.479602442 501252.29275365564 505989.8119496635 490529.952841703 587696.9518145018 564038.3529279204 579932.169537954 532761.7876806402 611306.2573556968 0.9476334564280218 0.9160015505560631 0.8199691835675015 0.8277190129517136 0.8024291375055917 0.9613789238092854 0.9226772115302054 0.948676972564527 0.8715137155395509 1.0 19.221535809100228 2.7212918637248302 24.903146196265073 0.9371360416040464 0.8613859280606838 0.3690658333202459 0.0509257819084424 934.1724640061378 1347162.2666387113 0.017126665896274547 0.01618448833364326 526.3708904046508 -2.7212918637248302 -0.07575011354336258 KPPLS(ph)PAQTNPVVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPPLSPAQTNPVVQR 15 1 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 KPPLS(1)PAQTNPVVQR;KPPLS(1)PAQTNPVVQR;KPPLS(1)PAQTNPVVQR;KPPLS(1)PAQTNPVVQR 209.9 1.3205999999999998e-09 2295940000.0 1999170.0 2170440.0 2368040.0 2292530.0 2104680.0 2628330.0 2548270.0 2093350.0 2305210.0 2543730.0 True False 1988406.6908486676 2242681.7833413114 2701439.4486273355 2582764.0629416034 2372698.52258429 2446639.733523319 2425000.4447632586 2249566.4068159144 1737121.8837314362 2381386.973603181 0.8349784024559811 0.9417544515866733 1.13439750807904 1.0845629423401635 0.9963515165257896 1.0274011576629256 1.018314314995218 0.9446454657523324 0.7294580439831108 1.0 21.183370645848157 1.4970001987241415 4.858542367338871 0.8557017092153287 1.0099587881365037 0.24564720497838244 0.09706343503240991 0.20396005368111716 10.540338533584213 0.05964135929171218 0.024910663526985018 31.405101309081456 -1.4970001987241415 0.15425707892117502 KPPPGER ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPPGER 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 73.248 0.079221 401640000.0 329230.0 342650.0 308740.0 315700.0 322170.0 252400.0 335140.0 334980.0 414020.0 348060.0 False True 327457.4622608915 354054.89811370056 352207.90838381316 355667.58763055 363196.43984880357 234952.18208569146 318927.9978408722 359977.90859397344 311990.3185837685 325846.51281084225 1.0049438904107113 1.0865695479123743 1.0809012665060314 1.091518778465551 1.114624295702202 0.7210517002589006 0.9787675647951883 1.1047468499469406 0.9574763157428128 1.0 18.313833029840946 KPPPSKEELLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPPSKEELLK 11 2 D3DQV9;P78344;H0Y3P2;P78344-2;E9PKF8 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 76.52199999999998 0.019753 381100000.0 435930.0 359980.0 369180.0 329070.0 376080.0 514210.0 516690.0 456050.0 759330.0 566820.0 False True 433583.0013163759 371961.71668749506 421157.3350299156 370730.2282596929 423971.5587991993 478663.8730201405 491695.7307525223 490082.76677497686 572203.2960007074 530645.0623209829 0.8170866594328264 0.700961420540833 0.7936705058326934 0.6986406820373675 0.7989739072380971 0.9020415094913303 0.926600030163099 0.9235604014318138 1.0783164428176404 1.0 19.017387668711606 2.3368092291116347 0.9096340192266392 1.0134142759076725 0.7458561356310326 0.8215204326708503 0.04974405036595676 0.23214164083458494 0.37381790554457917 0.03560102577773202 0.02225078905201278 217.17469942509405 -2.3368092291116347 -0.26755814027663993 KPPQHLS(ph)PDTTGPPPPPLETLEAEFGSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPQHLSPDTTGPPPPPLETLEAEFGSLK 29 1 A0A3B3ISF0;A0A3B3IT29;A0A3B3ISF8 A0A3B3ISF0 1 KPPQHLS(0.25)PDT(0.25)T(0.25)GPPPPPLET(0.25)LEAEFGSLK;KPPQHLS(0.773)PDT(0.113)T(0.113)GPPPPPLETLEAEFGSLK 129.57 7.319500000000002e-06 61918000.0 65820.0 60025.0 65070.0 55330.0 60474.0 74156.0 70386.0 71872.0 90469.0 74029.0 True False 65465.63243328946 62022.895839121295 74231.29040142088 62334.77232688728 68175.0054425196 69029.77026444743 66981.16027936872 77235.45359862098 68174.12717249156 69304.40584058438 0.944609965835001 0.8949343852941732 1.0710904956341365 0.8994344814133632 0.9837037720132447 0.9960372566100824 0.9664776642547135 1.114437858053062 0.9836910993697469 1.0 16.080659450271476 1.7875353951375235 24.999999999786947 1.0449248092396104 0.965925521002568 0.21764191223427054 0.05726934747210027 137.07020330186043 69990.85507976777 0.024954691237783662 0.014028374186944716 61.310575842672854 -1.7875353951375235 -0.07899928823704239 KPPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPPSPK 6 1 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 1 KPPS(1)PK;KPPS(1)PK 73.57300000000002 0.050597 1723780000.0 2229500.0 1231770.0 974120.0 913370.0 920870.0 879180.0 1446130.0 1403080.0 2831000.0 1448970.0 True False 2217496.619720738 1272768.719829311 1111267.6287971744 1029002.5483500652 1038137.3360758843 818404.3559671078 1376175.1671469258 1507784.9542958764 2133337.983456472 1356495.4940743714 1.6347246484839124 0.9382771453272 0.8192195504161756 0.7585742472754937 0.7653083556936365 0.6033225761104061 1.0145077319891749 1.1115296445011342 1.5726834278297346 1.0 20.371452824693783 1.619650726399412 3.0513368909749548 1.2954549117499456 0.9012086481248345 0.18254349470975972 0.2924060406768958 0.3126374123689912 6.846484930548495 0.18955941878507934 0.07851893942607974 41.65342584719709 -1.619650726399412 -0.39424626362511117 KPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEK 38 1 P43155-2;P43155;P43155-3 P43155-2 CRAT Carnitine O-acetyltransferase 0 11.976 0.096583 18843000.0 16362.0 15737.0 12306.0 16717.0 15809.0 20246.0 18291.0 12536.0 17987.0 14381.0 False True 16273.908809989101 16260.796531782607 14038.57783433051 18833.370485967374 17822.18244271577 18846.441673957637 17406.194451594525 13471.499976518164 13554.34486345164 13463.192267806462 1.2087704376698012 1.2077965023693416 1.042737677296634 1.3988785208841015 1.3237709220964362 1.3998494041434544 1.2928727530109387 1.0006170682663107 1.0067705038917958 1.0 13.716732908582916 1.711766061361089 5.681658971258958 1.0021291583664897 1.2692196515439924 0.6038627263003723 0.09831584915299361 0.10769779397436377 8.415978250204372 0.05500367760035996 0.02783378902437062 51.49511843891476 -1.711766061361089 0.26709049317750266 KPQSSSTEPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPQSSSTEPAR 11 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 ;;; 130.1 0.00037076 633951000.0 798470.0 855140.0 805350.0 796800.0 793670.0 829110.0 936020.0 829660.0 1021820.0 904360.0 False True 794171.1262383566 883602.8179569531 918736.2797723134 897674.798302255 894739.1700493532 771795.5772150066 890741.1366563607 891573.4421281157 770006.152686504 846642.9705384506 0.9380236461814325 1.0436545848777279 1.0851519610302944 1.0602754992831853 1.0568081247758003 0.9115950927037847 1.0520859059278131 1.053068971400176 0.9094815400130152 1.0 19.69139418753148 KPRPPPALGPEETSASAGLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPRPPPALGPEETSASAGLPK 21 2 Q01105 Q01105 SET Protein SET 0 ; 85.146 0.0016547 1700880000.0 1062070.0 1053250.0 977660.0 798570.0 869820.0 1113360.0 1062550.0 999270.0 1371880.0 1162950.0 False True 1056351.9331270712 1088306.7895469305 1115306.0300269425 899668.8801207722 980586.4211729419 1036396.0437675337 1011150.3971648219 1073840.601590245 1033798.556250183 1088729.5353484133 0.9702611152080295 0.9996117072351238 1.0244105572740105 0.8263474544509916 0.900670358739865 0.9519315956059446 0.9287434246387329 0.9863244880617632 0.9495457987362753 1.0 20.05421417032619 1.1628406089479264 1.1001158901967045 0.9946380829202703 0.9438620135448341 0.07951865880759867 0.05278027929025829 1.343745475294083 3.3975668109681525 0.052663241463205106 0.017278775542082063 14.54925008430455 -1.1628406089479264 -0.05077606937543622 KPRPS(ph)EGDEDCLPASK ddPTM_BT-474_Trastuzumab_2h_R1 6 KPRPSEGDEDCLPASK 16 2 P78346;P78346-2;Q5VU10 P78346 RPP30 Ribonuclease P protein subunit p30 1 KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK 175.23 2.8291e-09 3531600000.0 3955060.0 3424930.0 2977560.0 2961070.0 2964780.0 3831920.0 3274250.0 3345270.0 5383480.0 3681090.0 True False 3933766.3964084736 3538926.7246360914 3396774.5665845275 3335941.1583946534 3342327.1593721868 3567028.389769424 3115862.018650344 3594911.034336868 4056793.488936158 3446159.6846602913 1.1414927793156655 1.0269189615294756 0.9856695212657761 0.9680169996891764 0.969870077190477 1.0350734487572208 0.9041548575127891 1.0431643810177182 1.1771925447894793 1.0 21.71655812257884 -1.0815504996832601 5.243017309475485 0.9999997007451551 1.0195653600124845 0.0011675720682889912 0.07756254352538769 2.671143433557257e-07 4.679413687271935e-08 0.0739973156205254 0.01744106790164185 0.0828799538010456 1.0815504996832601 0.01956565926732945 KPS(ph)FSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSFSK 6 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 KPS(0.928)FS(0.072)K 75.378 0.047683 1050000000.0 2161400.0 1499500.0 1203500.0 1373900.0 1312800.0 1686200.0 1415200.0 1657800.0 2782800.0 1925700.0 True False 2149763.2625541138 1549409.9510331103 1372942.3389904748 1547835.599130859 1479977.2984247757 1569636.9628878469 1346741.3694110003 1781513.4541378275 2097016.227609566 1802800.1773252834 1.192457871700235 0.8594463049875475 0.7615610183860946 0.8585730235656502 0.8209325232153779 0.8706660797075314 0.747027533250572 0.9881924111972089 1.1631994793348617 1.0 20.78180806639506 1.510870836580784 5.517942768406847 1.0810926253334054 0.865419884019989 0.3262723419280267 0.12140069622437477 0.15517940551222742 10.46571909992149 0.06931645073140597 0.030462663849631658 32.4243169923326 -1.510870836580784 -0.2156727413134164 KPS(ph)ISITTESLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSISITTESLK 12 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5;G3V3T3 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 KPS(0.988)IS(0.012)ITTESLK 97.579 0.0029659 625110000.0 570220.0 472580.0 409630.0 383950.0 367550.0 485850.0 434480.0 414530.0 804720.0 512540.0 True False 567149.9988773974 488309.5396193577 467302.34343221236 432558.0306327192 414355.3138604704 452264.33306788077 413462.5425252201 445464.33354068926 606407.5386955466 479829.2583924296 1.1819829428024422 1.0176735392404779 0.9738929739253789 0.9014832319352867 0.8635474111117852 0.9425526375425719 0.8616868089921033 0.9283809308192813 1.2637985868706543 1.0 18.872161605496036 4.744207266788876 1.8948034756420904 0.9503550521490196 1.2565304827997124 0.2500507295117552 0.10925418665667157 1.0640804626624836 3.9249428371310087 0.027887520805313922 0.5780105975593698 55489.04709295839 -4.744207266788876 0.30617543065069275 KPS(ph)LIGLDPEQGHLNPMSYTQHCITTMAAPSWK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSLIGLDPEQGHLNPMSYTQHCITTMAAPSWK 33 1 Q8TCU6;Q8TCU6-3;Q8TCU6-2;H0YDZ4 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 1 KPS(1)LIGLDPEQGHLNPMSYTQHCITTMAAPSWK;KPS(0.992)LIGLDPEQGHLNPMS(0.003)Y(0.003)T(0.003)QHCITTMAAPSWK 178.2 6.8834e-20 1163260000.0 441370.0 361310.0 333670.0 357680.0 307430.0 544440.0 478460.0 402160.0 756660.0 604470.0 True False 438993.71296081675 373335.9849334931 380647.83568836807 402962.25132624304 346579.3882196286 506804.1442739057 455315.06190530467 432171.22132710135 570191.2817245404 565892.2070871965 0.7757550068067532 0.659729857131549 0.6726507821121404 0.7120830544749874 0.6124477133261269 0.8955842436540461 0.8045968051918174 0.7636988386032139 1.0075969850503375 1.0 19.110167744612276 1.5135412850316543 0.6399722167738727 1.0130270452034893 0.6893033009870193 0.6532385395485363 0.07723773270134945 0.4278516253753997 0.39300083883052145 0.07382117792607105 0.03608258127971279 32.62430623355694 -1.5135412850316543 -0.32372374421647 KPS(ph)PAQAAETPALELPLPSVPAPAPL ddPTM_BT-474_Trastuzumab_2h_R1 4 KPSPAQAAETPALELPLPSVPAPAPL 26 1 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 1 KPS(0.96)PAQAAET(0.04)PALELPLPSVPAPAPL;KPS(0.843)PAQAAET(0.157)PALELPLPSVPAPAPL;KPS(0.5)PAQAAET(0.5)PALELPLPSVPAPAPL;KPS(0.85)PAQAAET(0.15)PALELPLPSVPAPAPL 140.87 1.8868e-07 1202622000.0 1475688.0 1495898.0 1385556.0 1378640.0 1350701.0 1798966.0 1743955.0 1612849.0 2063812.0 1712116.0 True False 1467743.0597723506 1545688.0606405637 1580630.2413313552 1553175.6826448555 1522704.7661179472 1674607.7147304567 1659593.2340949413 1733207.9822612747 1555213.1862639596 1602847.2910637467 0.9157098545540587 0.9643389418680999 0.9861390103372561 0.9690103925084927 0.9499998999326928 1.0447705929733864 1.0354032123631283 1.0813306993899667 0.9702815701374932 1.0 20.61220555069956 2.7380304900803822 24.998045587871257 1.0362105459357285 0.959726811737714 0.520049778155993 0.032564942692079026 35.297073605358726 1664391.6368332992 0.01024488526312079 0.0102157166269864 547.0543680472841 -2.7380304900803822 -0.07648373419801446 KPS(ph)PEPEGEVGPPK ddPTM_BT-474_Trastuzumab_2h_R1 9 KPSPEPEGEVGPPK 14 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK 191.61 2.8675e-07 19404270000.0 13465680.0 10176430.0 8802400.0 7764050.0 8041810.0 12902290.0 12768340.0 11583040.0 18008120.0 11977940.0 True False 13393182.27505769 10515146.320768168 10041701.408167632 8746977.933934024 9065886.83595775 12010385.061023735 12150686.614404498 12447425.262285346 13570260.122445138 11213497.614369644 1.1943804453924232 0.9377222595823655 0.8955012747583411 0.7800401119027417 0.8084798470318648 1.0710650212858575 1.0835768671171682 1.1100394979648878 1.2101719364576666 1.0 23.4187330051447 2.5840209924110575 6.0692968752689795 1.1054799200770569 0.9149983309096222 0.36033248695666686 0.11454999627451364 0.2571686597957905 12.467201977339426 0.0390004998314397 0.03658946285020789 383.7257931258246 -2.5840209924110575 -0.19048158916743463 KPS(ph)PEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSPEPR 7 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 KPS(1)PEPR 89.04700000000003 0.011123 2607600000.0 2820400.0 2531100.0 2234100.0 1921600.0 2205400.0 2477000.0 2544000.0 2489400.0 3079700.0 2517700.0 True False 2805215.279775895 2615346.1334177386 2548641.86085469 2164874.362973915 2486244.6175700803 2305770.8202308114 2420937.0009762463 2675171.668917063 2320749.2008657358 2357018.230488587 1.190154256547435 1.10959945052084 1.0812991719314708 0.9184801097296381 1.0548262144984368 0.9782575248698213 1.0271184879526407 1.134981322720837 0.9846123253720727 1.0 21.168531486560436 4.387959210732859 2.0459191628409092 1.0269497132117273 1.1867509600046664 0.49388732371593913 0.05561840375674915 0.36960097598755093 2.673624277207752 0.015469865670863968 0.08447892793632587 24432.010746197335 -4.387959210732859 0.15980124679293906 KPS(ph)PQPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 6 KPSPQPSSPR 10 1 O75909;G3V5E1;O75909-1;O75909-4 O75909 CCNK Cyclin-K 2 KPS(1)PQPS(0.858)S(0.142)PR;KPS(1)PQPS(0.564)S(0.436)PR;KPS(0.999)PQPS(0.758)S(0.244)PR;KPS(1)PQPS(0.73)S(0.27)PR;KPS(1)PQPS(0.576)S(0.424)PR;KPS(1)PQPS(0.568)S(0.432)PR 127.79 0.0012132999999999998 14004286000.0 8739300.0 8308280.0 7052480.0 7395560.0 7672110.0 8923940.0 8992150.0 8502210.0 11083550.0 8910680.0 True False 8692248.5798275 8584816.077338682 8045407.882744938 8331837.13771614 8649107.732341323 8307049.032495173 8557165.351151144 9136688.083547596 8352157.614460965 8341992.7735830415 1.0419870666099866 1.0291085488019842 0.9644467576407748 0.9987825887479713 1.0368155388159572 0.995811103888926 1.0257939060136205 1.0952644447836435 1.0012185147067152 1.0 22.991960631788615 1.9941021925221627 24.64581574495454 1.0471917365682195 1.0104838818370843 0.022274726944616186 0.0334004414806109 344.35322288737626 1438992.1233369713 0.012761247033097344 0.009127851119566986 98.65115913835636 -1.9941021925221627 -0.03670785473113525 KPS(ph)PQPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPSPQPSSPR 10 1 O75909;G3V5E1;O75909-1;O75909-4 O75909 CCNK Cyclin-K 2 KPS(1)PQPS(0.06)S(0.94)PR;KPS(1)PQPS(0.001)S(0.999)PR;KPS(0.999)PQPS(0.059)S(0.942)PR 166.86 3.6208e-06 6505730000.0 2784710.0 2672630.0 2169030.0 2314350.0 2330000.0 2708250.0 2863820.0 2593040.0 3276350.0 2718810.0 True False 2769717.430770369 2761586.873911046 2474410.5704532666 2607346.4727043468 2626711.689008018 2521035.0520347604 2725286.0857451977 2786545.8119903184 2468937.4433407374 2545293.2181096524 1.0881722432071668 1.0849778934161587 0.972151480563395 1.0243796094505686 1.0319878551984019 0.990469402148917 1.0707159655928455 1.0947838120041196 0.9700011872008902 1.0 21.279400433855216 4.397185217362125 17.174727304655086 1.0284451806784707 1.087373620717614 0.30403539418896064 0.03879860896877509 3.1049674395059315 663.7524488396299 0.010081802380877776 0.027610845337833916 24956.588454472396 -4.397185217362125 0.058928440039143215 KPS(ph)PSES(ph)PEPWKPFPAVSPEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 KPS(0.719)PS(0.306)ES(0.975)PEPWKPFPAVSPEPR;KPS(0.983)PS(0.018)ES(0.999)PEPWKPFPAVSPEPR;KPS(0.819)PS(0.318)ES(0.864)PEPWKPFPAVSPEPR 145.65 4.8947e-08 1611380000.0 1007030.0 723010.0 515689.0 560768.0 604352.0 952310.0 876520.0 843990.0 1320860.0 931040.0 True False 1001608.262371551 747074.9507812263 588293.528750858 631761.1713031619 681312.644925053 886479.0511966109 834119.3789684356 906972.819494382 995351.7516172087 871620.2300965536 1.1491337944974018 0.8571106142160895 0.6749424903615304 0.7248124234486603 0.7816622668906855 1.0170473568499108 0.9569756990106071 1.0405596246818551 1.1419557706995267 1.0 19.73334015588521 2.7278433947520826 21.34723132668297 1.0281377856045222 0.8233250292435411 0.3673554537114335 0.12642718521428303 111.65923354049994 222407.86777341363 0.042772028493722185 0.040844905758850976 534.37163189169 -2.7278433947520826 -0.20481275636098106 KPS(ph)SETDIENWASK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSSETDIENWASK 14 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 KPS(0.494)S(0.494)ET(0.013)DIENWASK;KPS(0.499)S(0.499)ET(0.001)DIENWASK 179.87 1.1131e-06 1292050000.0 747110.0 672000.0 659500.0 573330.0 558670.0 833950.0 870370.0 742460.0 1027000.0 771960.0 True False 743087.6427717243 694367.1137674223 752351.8675232388 645913.5192151513 629813.3130034808 776300.9994071396 828266.8779637167 797866.1353354885 773909.6110949492 722692.8518917939 1.0282205515476497 0.9608052880968404 1.0410395862554978 0.8937593855042882 0.8714813095975943 1.0741783281445438 1.1460842262318793 1.1040183021693288 1.0708693313751272 1.0 19.46302309920168 2.58373910261352 7.333152321774909 1.0946726960571604 0.9604009113101326 0.49584383325810766 0.05977796334407336 0.20869716955750575 12.700891637467729 0.01973958867104741 0.018566974689027863 383.47680702647705 -2.58373910261352 -0.13427178474702783 KPS(ph)VSEEVQATPNK ddPTM_BT-474_Trastuzumab_2h_R1 6 KPSVSEEVQATPNK 14 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 KPS(1)VSEEVQATPNK;KPS(0.998)VS(0.002)EEVQATPNK;KPS(0.998)VS(0.002)EEVQATPNK;KPS(0.612)VS(0.388)EEVQATPNK;KPS(0.999)VS(0.001)EEVQATPNK;KPS(0.998)VS(0.002)EEVQATPNK 258.67 1.3307e-24 15829980000.0 10179670.0 8184160.0 7533080.0 6813800.0 6944230.0 10188420.0 9577630.0 9033950.0 13609040.0 10030320.0 True False 10124863.78778766 8456564.818170816 8593672.18529485 7676426.381365341 7828536.528824098 9484118.50636092 9114323.446800353 9708109.222468585 10255274.443793176 9390176.390211001 1.078239999659916 0.9005757151683061 0.9151768644360627 0.8174954401674289 0.8336942996071012 1.01000429728326 0.9706232415720948 1.0338580255626528 1.0921279875513323 1.0 23.162720827830757 2.6200307327899215 6.917111907693421 1.0212953390521387 0.9040292615320654 0.3809830515152859 0.07152292124086851 0.27731471459658336 14.744892200056965 0.024142599290896204 0.022717113862079703 416.89888421933307 -2.6200307327899215 -0.11726607752007323 KPSAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSAPK 6 1 P26373 P26373 RPL13 60S ribosomal protein L13 0 91.906 0.07593899999999999 1193700000.0 1272600.0 1173500.0 1077200.0 865850.0 829820.0 871630.0 1272700.0 1106600.0 1752700.0 1292500.0 False True 1265748.4629991527 1212559.238104269 1228860.396809753 975466.5212223986 935492.658271517 811376.2696963191 1211134.6388138619 1189180.1112009422 1320770.5699767452 1210011.543435077 1.0460631304440662 1.002105512697804 1.0155774161634579 0.8061629878779228 0.773127052669073 0.6705525034851483 1.0009281691442353 0.9827841045425098 1.0915355123201855 1.0 20.206589380110906 2.0366835788998805 24.99983436700075 1.015109880337484 0.8837174556186542 0.2493995723817194 0.1133830985672367 275.6921380177752 187882.82488053056 0.047587286582954816 0.03514542725269603 108.81370025117297 -2.0366835788998805 -0.13139242471882984 KPSDEEFASR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSDEEFASR 10 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 0 85.845 0.022387 296320000.0 344600.0 353400.0 271850.0 304650.0 240800.0 257630.0 263360.0 232990.0 315930.0 282100.0 False True 342744.71188865893 365162.7053651891 310124.1170374411 343218.6587635318 271464.4526665793 239820.6444957871 250620.27066710047 250376.8968992478 238073.28474510892 264096.1364820391 1.297802824586071 1.3826885551202428 1.1742849447497778 1.299597424390469 1.0279001286527387 0.9080808515049861 0.9489736351525342 0.9480521003997181 0.9014644739465926 1.0 18.01070367060682 3.1472823501125906 3.344790144352647 0.940746297714871 1.2902261255509426 0.9017104359386893 0.054347538651814804 0.066489203683904 1.47375821025492 0.016002277082585295 0.01992124393382299 1403.7260196064926 -3.1472823501125906 0.3494798278360717 KPSDGS(ph)PDTKPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 KPSDGSPDTKPSR 13 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 KPS(0.009)DGS(0.983)PDT(0.007)KPSR;KPSDGS(0.983)PDT(0.016)KPSR;KPSDGS(1)PDTKPSR;KPS(0.002)DGS(0.96)PDT(0.037)KPSR;KPSDGS(1)PDTKPSR 163.7 1.9976e-05 1264599000.0 1905281.0 1301684.0 1242303.0 1080712.0 1126760.0 1751582.0 1797980.0 1628916.0 2775050.0 1955230.0 True False 1895023.1787926205 1345009.7650554073 1417208.4641087523 1217530.0283921035 1270246.2071702469 1630499.2591205197 1711004.8384493995 1750473.98338785 2091176.111264887 1830445.547443381 1.0352797336361284 0.7347991132180952 0.7742423510429988 0.6651550110805816 0.6939546543432688 0.8907663281204239 0.9347477398817973 0.9563103288337482 1.142441038022504 1.0 20.8037634259484 2.0508992776027726 1.3852998404215375 1.0464865153063594 0.7754959188567692 0.5178757394786423 0.1051400925583752 0.3429543349977829 1.2325018807615509 0.07198923758917608 0.03542100732306476 112.4344183698081 -2.0508992776027726 -0.2709905964495902 KPSDGSPDTKPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSDGSPDTKPSR 13 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 0 ; 56.648 0.06780800000000001 216260000.0 250170.0 252590.0 201817.0 215698.0 215175.0 285000.0 266340.0 238450.0 331320.0 289090.0 False True 248823.11251650026 260997.3054561206 230231.07937518912 243005.3446839858 242576.26080785436 265298.62081783667 253456.11668239496 256244.34982456584 249670.62546054338 270640.0286975988 0.9193876963208728 0.964370668714891 0.8506911578569154 0.8978913646048613 0.8963059233152032 0.9802637920729369 0.9365063915419387 0.9468087594347766 0.9225192099706518 1.0 18.046015709659038 2.7542351714157 24.823407434596046 0.9516708866320492 0.9054940880031538 0.3691850150549928 0.033259209162550436 913.5711947521992 1446798.4205471824 0.010172971466365385 0.010755519707579342 567.8520152828036 -2.7542351714157 -0.046176798628895455 KPSDSVHITNDDER ddPTM_BT-474_Trastuzumab_2h_R1 4 KPSDSVHITNDDER 14 1 A6NHR9;A6NHR9-2 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 0 ;;; 139.58 6.6093e-06 1796230000.0 1219820.0 1514190.0 1468930.0 1456970.0 1586540.0 1664910.0 1760500.0 1544680.0 1810380.0 1686430.0 False True 1213252.6246547422 1564588.8988028173 1675742.5758315532 1641422.2526135002 1788576.4648406785 1549818.6904765777 1675337.8892369007 1659951.8653261075 1364236.1068491451 1578800.5935746362 0.7684647634365023 0.9909984232146496 1.0614022965607242 1.039664071126981 1.1328704030893977 0.9816430882937286 1.06114597122344 1.0514005835073401 0.8640965251731471 1.0 20.590397536071567 4.728508420775681 3.3653582000816766 1.0316534674200712 0.7367567592153189 0.566021167922002 0.06641564517944426 0.20182968835042706 3.8530764954689762 0.015529413141428975 0.15149810381535755 53519.05307756064 -4.728508420775681 -0.29489670820475233 KPSETQELVQQVLSLATQDSDNPDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSETQELVQQVLSLATQDSDNPDLR 26 1 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1 P63010 AP2B1 AP-2 complex subunit beta 0 ; 271.12 2.7313999999999993e-60 1746610000.0 835540.0 800440.0 779420.0 787140.0 804500.0 884850.0 905720.0 837270.0 1083510.0 945690.0 False True 831041.54547722 827082.1615238016 889155.5611599123 886791.8432927169 906948.3063549137 823682.4022128533 861906.8634136026 899751.3389709119 816493.4787901526 885335.2545540567 0.9386744074659216 0.9342022214402869 1.0043150959890104 1.0016452397339513 1.0244122796304362 0.9303621401903193 0.9735372662277467 1.0162831925450846 0.9222421388849135 1.0 19.755864346009922 4.250462611662981 24.867586869565454 0.9858608529257884 0.9364382790860034 0.2560030500525433 0.03238930869272487 268.9913128033354 562009.4519330186 0.007767223414304624 0.020896544882258523 17801.746473284376 -4.250462611662981 -0.04942257383978499 KPSGS(ph)PDLWK ddPTM_BT-474_Trastuzumab_2h_R1 4 KPSGSPDLWK 10 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KPS(0.001)GS(0.999)PDLWK;KPS(0.482)GS(0.518)PDLWK;KPS(0.03)GS(0.97)PDLWK;KPS(0.415)GS(0.585)PDLWK 120.3 0.00035382 4700910000.0 6810680.0 5387620.0 4631170.0 4401430.0 4613330.0 6357940.0 5895450.0 6170300.0 9281090.0 5857590.0 True False 6774012.055617688 5566943.674814939 5283198.481148738 4958650.586711213 5200810.230150801 5918430.572780909 5610264.560693942 6630759.1181485355 6993889.72973439 5483753.591264903 1.2352874619326522 1.0151702811159404 0.9634274030044623 0.9042438731400826 0.9484033415424057 1.0792663226532289 1.023070141158523 1.2091643083144188 1.2753836607237405 1.0 22.386732315378048 1.7662050708613675 6.9325509478251535 1.1807070103776085 1.0157216723647602 0.2491636687144193 0.10699366128959381 0.1997015920620449 26.46466878695908 0.05119387118720448 0.028011003035782453 58.37206680856543 -1.7662050708613675 -0.16498533801284831 KPSKYPLCSADAAVS(ph)TTPPGS(ph)PPPPPPLPEPPVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 KPSKYPLCSADAAVS(0.662)T(0.122)T(0.216)PPGS(1)PPPPPPLPEPPVLK 184.65 1.4748e-20 2492500000.0 2232300.0 1974100.0 1770900.0 1698600.0 1832200.0 2327800.0 2174900.0 2304700.0 3208200.0 2714100.0 True False 2220281.544831847 2039806.7251313478 2020227.3270612643 1913642.5858386192 2065519.8096997829 2166884.6650517927 2069691.778075173 2476688.4170294707 2417582.0976775205 2540883.814342088 0.8738225385589876 0.802794174852704 0.7950884316937421 0.7531405312738076 0.8129139152451206 0.8528074573188876 0.8145558511541304 0.9747350126950848 0.9514729024725225 1.0 21.276898976866256 1.7352925407887396 4.745099447475511 0.9736312779310892 0.8121445780602163 0.8349662427653136 0.032616893829440004 0.06838888007055416 3.604748765453056 0.017734024912014337 0.008989545589523095 54.361638822198735 -1.7352925407887396 -0.16148669987087283 KPSKYPLCSADAAVST(ph)TPPGS(ph)PPPPPPLPEPPVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 KPSKYPLCSADAAVS(0.062)T(0.559)T(0.379)PPGS(1)PPPPPPLPEPPVLK 179.54 7.6554e-20 2602700000.0 3088700.0 2697300.0 2660200.0 2443000.0 2794200.0 3489800.0 3419300.0 3262100.0 4666900.0 3499400.0 True False 3072070.7823868287 2787077.99994772 3034733.037127092 2752283.5495135672 3150024.807479059 3248558.3401055713 3253895.396005532 3505534.4666081625 3516805.028256104 3276065.296012926 0.9377318535517699 0.8507394536182418 0.9263347225772506 0.8401186486921316 0.9615268692332652 0.9916036606654844 0.9932327661373613 1.0700441382760313 1.0734844120891502 1.0 21.643532681277225 2.6435821201834355 1.2770686379417833 1.0484899466729707 0.8885471202125592 0.7382717034596247 0.038431474889561834 0.20104252790150923 0.6699343237428133 0.01774906585168951 0.015250783456765773 440.13116380222374 -2.6435821201834355 -0.15994282646041147 KPSKYPLCSADAAVSTTPPGS(ph)PPPPPPLPEPPVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 KPS(0.006)KY(0.005)PLCS(0.006)ADAAVS(0.06)T(0.06)T(0.06)PPGS(0.802)PPPPPPLPEPPVLK 53.482 0.028976 438990000.0 263220.0 284620.0 269160.0 244360.0 246030.0 347140.0 340890.0 344790.0 469930.0 397570.0 True False 261802.85276649107 294093.40464357677 307055.38841933984 275295.95094520506 277360.4621659409 323143.028879663 324399.8483737387 370519.98060814454 354122.0482393861 372196.7422231988 0.7033990980219091 0.7901557732260186 0.8249813971644194 0.7396516941572683 0.745198521914019 0.868204882582988 0.8715816437189627 0.9954949589159791 0.9514377963765903 1.0 18.50570590221699 2.1852030366004196 1.3196213926717202 0.9872710049332314 0.7642005030154722 0.8564649657539785 0.03856286516197812 0.1552468361346091 0.5191346374094958 0.024604301225829916 0.013516728542409297 153.18034262728008 -2.1852030366004196 -0.22307050191775923 KPSLVSDLPWEGAAPQSPSFSGSEDSGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSLVSDLPWEGAAPQSPSFSGSEDSGSPK 30 1 Q13425;Q13425-2;H7BY41;H0YCS0 Q13425 SNTB2 Beta-2-syntrophin 1 KPSLVSDLPWEGAAPQSPSFSGS(0.001)EDS(0.021)GS(0.978)PK;KPSLVSDLPWEGAAPQSPSFSGSEDS(0.001)GS(0.999)PK 182.67 3.730899999999998e-18 1075860000.0 687240.0 512830.0 421980.0 403920.0 396090.0 698260.0 689690.0 614620.0 1023040.0 666480.0 True False 683539.9761995424 529899.236537718 481391.11608408764 455056.23058514926 446529.713690637 649990.9297272371 656327.0598283435 660486.065377122 770925.500033667 623944.6757977653 1.0955137574105902 0.8492727914701694 0.771528526096627 0.7293214418463014 0.7156559403599552 1.0417444926445916 1.051899447638005 1.05856511161448 1.2355670781996408 1.0 19.25105858767389 2.615432169217946 5.57500702567415 1.0816282038119356 0.82484009015951 0.5379179844649369 0.11398670391900108 0.18561861279597777 7.712665711285791 0.03869810531612061 0.03633927736646798 412.50780408030147 -2.615432169217946 -0.2567881136524256 KPSPQPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 3 KPSPQPSSPR 10 1 O75909;G3V5E1;O75909-1;O75909-4 O75909 CCNK Cyclin-K 1 KPS(0.054)PQPS(0.741)S(0.205)PR;KPS(0.001)PQPS(0.499)S(0.499)PR;KPSPQPS(0.729)S(0.271)PR 82.20200000000001 0.011466 978950000.0 1082150.0 1216640.0 1141980.0 1158560.0 1109380.0 1247860.0 1291110.0 1177870.0 1417110.0 1267600.0 True False 1076323.8246381686 1257135.1269255902 1302760.8577318985 1305233.5772101667 1250652.9671895776 1161598.3753464776 1228654.0767808333 1265768.6405026692 1067882.2288011315 1186700.6827530419 0.906988459921664 1.0593531673118672 1.097800714759519 1.0998844073992937 1.053890829731531 0.9788469765195306 1.0353529703298587 1.0666283915554817 0.8998749594748172 1.0 20.178524664403483 2.76687137995194 23.526529846340555 1.0089839041428037 1.0505995139009063 0.09727836976167126 0.06502343479840039 949.5415259741814 789075.8287567799 0.02028556625713349 0.021511737155462812 584.6169191721681 -2.76687137995194 0.041615609758102634 KPSPQPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPSPQPSSPR 10 1 O75909;G3V5E1;O75909-1;O75909-4 O75909 CCNK Cyclin-K 1 KPS(0.008)PQPS(0.226)S(0.767)PR;KPSPQPS(0.007)S(0.993)PR;KPSPQPS(0.027)S(0.973)PR;KPSPQPS(0.041)S(0.959)PR 121.56 0.00031351 5821770000.0 2746840.0 3137590.0 2791980.0 2835600.0 2730230.0 2986800.0 3143470.0 2772520.0 3195370.0 2900070.0 True False 2732051.318642613 3242022.7864367934 3185066.5156748015 3194586.6692593847 3077908.607158948 2780329.5461709304 2991408.346878454 2979419.520971292 2407913.879264329 2714985.049725157 1.0062859531838613 1.1941217822783183 1.1731432981545262 1.1766498197044504 1.133674237900695 1.0240680870240475 1.1018139297604161 1.097398131629824 0.8868976569532442 1.0 21.372512823064028 1.3263020883192824 5.856450995232311 0.9450434607710343 1.117920904261949 0.531526602164601 0.0638219889489909 0.14651231363570585 7.305425680557888 0.04534286718505846 0.016046472587716576 21.19835146078875 -1.3263020883192824 0.1728774434909146 KPSPS(ph)ESPEPWKPFPAVSPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KPS(0.098)PS(0.494)ES(0.408)PEPWKPFPAVSPEPR 64.315 0.019885 374090000.0 172480.0 171790.0 146370.0 136150.0 158950.0 181870.0 196790.0 177720.0 235410.0 186120.0 True False 171551.38684432965 177507.926300752 166977.62372915304 153386.5760402261 179191.34032953842 169297.75497592986 187270.51588919625 190982.3688438744 177396.35983238733 174241.66225465128 0.9845600909936807 1.0187455973722699 0.958310553104791 0.8803094165622352 1.028406972309833 0.9716261471869111 1.0747746174247552 1.0960775188471106 1.0181053000580624 1.0 17.410730096891132 2.2437194588795424 24.985773092805857 1.0603181057114466 0.9732567550636705 0.36939634556372136 0.04583854914008448 115.73807510435665 560555.8654788173 0.016513217675006454 0.013426307664694681 175.27479138495684 -2.2437194588795424 -0.08706135064777609 KPSPSES(ph)PEPWKPFPAVSPEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KPS(0.002)PS(0.007)ES(0.992)PEPWKPFPAVSPEPR;KPS(0.025)PS(0.011)ES(0.964)PEPWKPFPAVSPEPR 167.22 5.638000000000001e-12 3388200000.0 1770010.0 1480620.0 1468950.0 1308130.0 1398320.0 1768310.0 1839000.0 1794920.0 2226700.0 1797140.0 True False 1760480.4628265982 1529901.5416463085 1675765.3916577126 1473739.1238744096 1576387.7635080204 1646070.891853995 1750040.5443377823 1928866.0448190786 1677959.6212513342 1682444.9865910383 1.0463821859600146 0.9093322835751007 0.9960298286205127 0.875950854631207 0.9369624422026954 0.9783802174650926 1.0401769795062992 1.1464660420946884 0.9973340196110707 1.0 20.68212790098302 2.2521174249915483 3.2633784020561576 1.0698577021189268 0.9497720783523065 0.33487372889888023 0.05923740744752109 0.21070729785050926 4.691417597886942 0.022676896834130787 0.017057502966787166 178.69706725189846 -2.2521174249915483 -0.12008562376662035 KPSQTAS(ph)YER ddPTM_BT-474_Trastuzumab_2h_R1 7 KPSQTASYER 10 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 KPSQT(0.159)AS(0.841)YER;KPSQT(0.23)AS(0.769)YER;KPSQT(0.01)AS(0.99)YER;KPS(0.002)QT(0.033)AS(0.965)Y(0.001)ER;KPS(0.001)QT(0.013)AS(0.986)YER;KPSQT(0.116)AS(0.884)YER;KPS(0.001)QT(0.01)AS(0.988)Y(0.001)ER 101.97 0.0018431 4483950000.0 3578360.0 3124140.0 2700620.0 2814860.0 2195280.0 2775680.0 3006360.0 2693030.0 3809950.0 3156060.0 True False 3559094.5073531717 3228125.111317488 3080843.8217901527 3171220.987385906 2474835.8955560178 2583803.7748479084 2860930.8813895183 2893997.573529252 2871038.873214413 2954637.5487610917 1.204579055338119 1.0925621359787674 1.0427146379027032 1.073302878965858 0.837610656032494 0.8744909425290837 0.9682848857685216 0.9794763404204124 0.9717059455967002 1.0 21.494549732323726 4.222058361881086 1.0668146101459206 0.9456514588256543 1.2159706849697367 0.6563436793978621 0.05913832620020733 0.5559949807584791 0.8960698680793778 0.020159311393639717 0.14120412976816293 16674.712776172724 -4.222058361881086 0.27031922614408244 KPSVGS(ph)PSLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPSVGSPSLTR 11 1 Q9NRJ4-2;Q9NRJ4 Q9NRJ4-2 TULP4 Tubby-related protein 4 1 KPS(0.001)VGS(0.544)PS(0.455)LTR;KPSVGS(0.985)PS(0.015)LTR 165.34 1.3298e-05 400130000.0 636430.0 714570.0 645870.0 601780.0 659930.0 752770.0 735380.0 662630.0 853170.0 708640.0 True False 633003.5315940209 738354.0304833127 736802.8819973227 677965.2862981072 743968.1737884377 700732.7817299749 699806.8599755946 712078.815366961 642917.6853922851 663413.9885027724 0.9541606637246474 1.1129612026265363 1.1106230721184793 1.0219339628761446 1.121423706285519 1.056252647477973 1.054856955239903 1.0733551412957358 0.9691048071555675 1.0 19.3395499070192 1.242268576868328 24.992479017937477 0.9845523846741284 1.0666317181872746 0.3034296958706115 0.04743446478651957 94.6600633098274 638067.2436499787 0.03222482742032744 0.010745852137631458 17.469021400740797 -1.242268576868328 0.08207933351314622 KPSVGVPPPAS(ph)PSYPR ddPTM_BT-474_Trastuzumab_2h_R1 5 KPSVGVPPPASPSYPR 16 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 KPSVGVPPPAS(0.979)PS(0.02)YPR;KPSVGVPPPAS(0.871)PS(0.129)YPR;KPSVGVPPPAS(0.964)PS(0.034)Y(0.002)PR;KPSVGVPPPAS(0.963)PS(0.037)YPR;KPSVGVPPPAS(0.97)PS(0.03)YPR 124.08 5.172e-05 4434240000.0 2730730.0 3318590.0 2911530.0 3347480.0 2874300.0 3276810.0 3331480.0 3021220.0 3556320.0 3334720.0 True False 2716028.0530926264 3429047.262019979 3321448.1165275746 3771270.624775146 3240325.0676891594 3050291.8374810377 3170323.584910512 3246678.7778443093 2679912.5882465276 3121895.314602573 0.8699933147625052 1.0983863699659344 1.0639204014918755 1.208006753825197 1.0379352095929146 0.9770641005204076 1.0155124581152408 1.039970418821562 0.85842487277242 1.0 21.573990730075007 2.993499439514768 24.900184127766877 0.9905554706349629 1.070573064644389 0.14944862705467654 0.08985126169783515 552.7194674190491 2117186.8193184184 0.0263066793797776 0.030398518012809305 985.1433714117186 -2.993499439514768 0.0800175940094261 KPTAEAS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPTAEASPVK 10 1 Q6ZRI6;H3BMJ2;Q6ZRI6-2 Q6ZRI6 C15orf39 Uncharacterized protein C15orf39 1 KPTAEAS(1)PVK 79.771 0.015929 312300000.0 454270.0 309550.0 339090.0 270280.0 201170.0 349120.0 369750.0 322270.0 734170.0 398620.0 True False 451824.2607941416 319853.18462307315 386830.92457688425 304497.4202875672 226787.8070719926 324986.1561400811 351863.77991783276 346319.4238539013 553243.6408739809 373179.7303242485 1.2107416991848954 0.8571022449294313 1.036580749551361 0.8159538033402709 0.6077173775621231 0.8708569349618938 0.9428802030916986 0.9280231366076372 1.4825125694615795 1.0 18.50951110115474 1.3599208410688441 8.32890107982718 1.2395479709770505 0.8978817208558324 0.3493989479619979 0.18139252539307185 0.24469478388962748 16.443254056795393 0.11860527098176932 0.0433025078658016 22.904501339718973 -1.3599208410688441 -0.3416662501212181 KPTDGASSSNCVTDISHLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPTDGASSSNCVTDISHLVR 20 1 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YDS9 P49321 NASP Nuclear autoantigenic sperm protein 0 ;;; 233.1 1.1372999999999999e-29 5833430000.0 5875200.0 6457830.0 5741150.0 5565500.0 5497640.0 6647860.0 6705660.0 6277240.0 7993090.0 6407810.0 False True 5843568.575996084 6672774.967709322 6549454.017029633 6270091.729356427 6197731.866934784 6188309.085579177 6381281.607691186 6745679.523978847 6023300.071418622 5998858.079797853 0.9741134893114521 1.1123408620352258 1.091783457769405 1.0452142134303857 1.0331519406679532 1.0315811781611124 1.063749387434453 1.1244939343866192 1.0040744407178228 1.0 22.516256470144782 1.046825397472472 24.832642497074247 0.9999997492580126 1.063361544634088 0.23204031372811484 0.04142614036143466 128.7327567065946 68269.56840343394 0.03995041051270736 0.009987602629442866 11.138466358048172 -1.046825397472472 0.06336179537607545 KPTETQELVQQVLSLATQDSDNPDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KPTETQELVQQVLSLATQDSDNPDLR 26 1 Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 Q10567-4 AP1B1 AP-1 complex subunit beta-1 0 ; 249.27 1.4977e-45 2486300000.0 1326170.0 1282030.0 1264870.0 1199220.0 1272480.0 1324710.0 1407160.0 1385050.0 1454460.0 1431540.0 False True 1319030.0480713374 1324701.593546498 1442952.701552871 1351041.1290412038 1434522.7854201393 1233135.915731919 1339090.2949267826 1488409.4641413926 1096027.8217654908 1340177.8915969462 0.9842201220761752 0.9884520568892488 1.0766874387350616 1.0081058175279352 1.0703972915944557 0.9201285317895547 0.9991884684287191 1.110605893048881 0.8178226402910378 1.0 20.353993082164614 2.7686171524636616 24.980154041362614 0.9899185091752088 1.0253796251651455 0.09157580132514587 0.07566760486755612 2548.5028580865605 2118071.8805823885 0.023371249106501863 0.024786249620126734 586.9716859409507 -2.7686171524636616 0.03546111598993662 KPTTEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 KPTTEEK 7 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ;;;; 96.948 0.019814 3973000000.0 3669900.0 2877270.0 2438850.0 2343460.0 2441490.0 1825100.0 3140400.0 3367820.0 4804960.0 3827200.0 False True 3650141.6661642175 2973038.192603555 2782218.881135787 2640141.795719635 2752399.279655016 1698935.1328232782 2988486.8545069946 3619143.829843441 3620841.9911653213 3582944.8193692314 1.0187546418330875 0.8297750432916103 0.7765173680865087 0.7368636495452435 0.7681947164733531 0.4741728434216778 0.8340867652639736 1.0101031448429012 1.0105771017156668 1.0 21.772714394219353 1.816425904623424 4.229943281600171 1.0069320352777316 0.7618960666786933 0.4199450215212994 0.12492047740810104 0.2180999042806075 6.6013654971643465 0.06475819231917361 0.03528413669980013 65.52784786387268 -1.816425904623424 -0.2450359685990383 KPVEGYDISFLITNFHTEQMYK ddPTM_BT-474_Trastuzumab_2h_R1 3 KPVEGYDISFLITNFHTEQMYK 22 1 F8WCF6;P59998;P59998-3;R4GN08;P59998-4 F8WCF6 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 0 ;; 230.54 1.2449999999999996e-26 1211587000.0 513623.0 527740.0 513608.0 470602.0 521200.0 608249.0 618981.0 542206.0 796360.0 625123.0 False True 510857.7108368804 545305.5068744329 585919.5420392349 530180.1649480897 587571.7306055696 566202.178294135 589038.5242929552 582668.1649862808 600107.7486772866 585227.1149452742 0.8729221490098793 0.9317844183030131 1.0011831767125579 0.9059391668782606 1.0040063346355963 0.967491361617928 1.006512701223759 0.9956274241339063 1.025427109154715 1.0 19.15863708890781 7.437909368087694 0.35614029732686664 1.0072703518939619 1.0586958534213377e-13 0.6271357968987645 0.029331468880397504 26.43143099556196 0.544065726322889 0.02288347028102964 16.846282930647966 27410020.98840743 -7.437909368087694 -1.007270351893856 KPVTDCVISVPSFFTDAER ddPTM_BT-474_Trastuzumab_2h_R1 2 KPVTDCVISVPSFFTDAER 19 1 Q92598-2;Q92598;Q92598-4 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ; 88.036 0.004202399999999999 2601980000.0 1427820.0 1545080.0 1506140.0 1317610.0 1385660.0 1702660.0 1531830.0 1633020.0 2091900.0 1787370.0 False True 1420132.7757657152 1596507.0537794146 1718191.4203964362 1484419.2909024016 1562115.58754972 1584959.121830521 1457729.530741133 1754884.2447075385 1576379.2750238786 1673298.5163555564 0.8487025846761425 0.9541077328249872 1.026828986939316 0.8871216201968948 0.9335546361159796 0.947206434678829 0.8711712324445655 1.048757425859479 0.9420789295010146 1.0 20.674263414370447 1.7349261884389748 24.999999848356136 0.9981299186831805 0.9290341858168581 0.282865989531614 0.05273469553460676 0.5674713775807608 3855.7302228416647 0.02382757137336312 0.013213549765676269 54.31580099240745 -1.7349261884389748 -0.06909573286632231 KPVTVSPTTPTS(ph)PTEGEAS ddPTM_BT-474_Trastuzumab_2h_R1 4 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 KPVTVSPTTPT(0.016)S(0.936)PT(0.039)EGEAS(0.008);KPVTVSPTTPT(0.004)S(0.873)PT(0.104)EGEAS(0.019);KPVTVSPTTPT(0.002)S(0.992)PT(0.006)EGEAS;KPVTVSPTTPT(0.04)S(0.918)PT(0.041)EGEAS 229.02 9.539e-20 1091930000.0 1112850.0 1329380.0 1260410.0 1220020.0 1260980.0 1440610.0 1317850.0 1119000.0 1372390.0 1238020.0 True False 1106858.539249258 1373627.6096728204 1437864.7723198864 1374474.4069085321 1421558.3285859767 1341024.0215311712 1254100.5608241141 1202505.462166865 1034182.8735838335 1159008.503677752 0.9550046748897766 1.1851747466166482 1.240598984181109 1.1859053687242727 1.2265296795278935 1.1570441608287165 1.0820460392176736 1.0375294558677428 0.8922996425843094 1.0 20.144459720801187 1.745914498210043 1.7033799340055586 0.9508449778129228 1.166887620316473 0.5171053626151203 0.0798117079887808 0.26703074294794116 1.5280958800742208 0.05911483141854787 0.023704976504580734 55.707606370321614 -1.745914498210043 0.21604264250355032 KPVVDCVVSVPCFYTDAER ddPTM_BT-474_Trastuzumab_2h_R1 2 KPVVDCVVSVPCFYTDAER 19 1 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 167.22 2.9499e-11 4522600000.0 3642400.0 4217900.0 4046800.0 3835900.0 3812200.0 4293900.0 4227200.0 4043700.0 5313100.0 4320600.0 False True 3622789.7231086846 4358290.251725609 4616554.264583843 4321524.546696308 4297661.073320324 3997072.7997533707 4022714.1865278264 4345461.427492538 4003757.6968924766 4044855.6089482405 0.8956536582156753 1.0774896987877571 1.141339694393753 1.0684002012670133 1.0625004916894472 0.9881867701064131 0.9945260289708656 1.0743180591859154 0.9898394612740081 1.0 21.94765677235708 2.764204822271437 23.934488166443874 1.0176775039653385 1.0568544963833826 0.0771156159646662 0.06278196381778837 1241.0822204819794 1158335.1600438503 0.019635666315604986 0.02081685860291322 581.0383826463566 -2.764204822271437 0.039176992418044065 KPWTSLS(ph)SESVSCPQGSLS(ph)PATSLMQVSERPR ddPTM_BT-474_Trastuzumab_2h_R1 4 KPWTSLSSESVSCPQGSLSPATSLMQVSERPR 32 2 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 2 KPWT(0.007)S(0.029)LS(0.96)S(0.004)ESVSCPQGS(0.054)LS(0.892)PAT(0.043)S(0.011)LMQVSERPR;KPWT(0.077)S(0.067)LS(0.851)S(0.005)ESVSCPQGS(0.128)LS(0.861)PAT(0.009)S(0.002)LMQVSERPR;KPWTS(0.002)LS(0.985)S(0.012)ESVSCPQGS(0.105)LS(0.886)PAT(0.008)S(0.002)LMQVSERPR;KPWTS(0.001)LS(0.883)S(0.116)ESVSCPQGS(0.087)LS(0.908)PAT(0.004)S(0.001)LMQVSERPR 214.58 5.1701e-36 1710670000.0 434285.0 401276.0 405207.0 395541.0 410870.0 530199.0 506511.0 487915.0 574989.0 581294.0 True False 431946.8578135995 414632.2290835354 462256.62347761815 445616.45004426705 463191.8590827143 493547.5910841972 482009.12787007797 524325.6948821681 433290.6654078609 544195.319249169 0.7937349744381491 0.7619180364425168 0.8494314580202521 0.8188538825712208 0.851150024079193 0.9069309742780389 0.8857281766684619 0.9634880645529712 0.7962043223849772 1.0 19.05376502212133 7.999999999827852 0.10487322235696747 1.0509866336937266 0.20885931883413356 0.5673810454336239 0.04791246996498723 76.80283529673346 0.5660190587041 0.48509960196829394 9.333130304964753 99999999.96036154 -7.999999999827852 -0.842127314859593 KPWTSLSSESVSCPQGS(ph)LSPATSLMQVSERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KPWTSLSSESVSCPQGSLSPATSLMQVSERPR 32 2 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 KPWTS(0.002)LS(0.008)S(0.041)ES(0.06)VS(0.006)CPQGS(0.638)LS(0.167)PAT(0.033)S(0.044)LMQVS(0.001)ERPR 126.8 6.3474e-08 306440000.0 59997.0 70422.0 58093.0 61562.0 65427.0 78399.0 62826.0 60622.0 69566.0 63856.0 True False 59673.98281829337 72765.953699002 66271.98944659221 69355.74288790586 73758.7406337885 72979.46166139506 59786.86636137322 65145.92147227861 52422.39143664184 59780.6554101279 0.9982156001619136 1.2172157230426444 1.1085858626328235 1.160170332895945 1.2338228834689635 1.2207872456518944 1.000103895669974 1.0897492010641578 0.8769122900542933 1.0 15.867391093757794 1.7420770774066006 1.5530454096499942 0.9577945036778855 1.1562215148563948 0.45997167330426514 0.08354640149975436 0.31940452882727927 1.4969180567444125 0.0618882594769525 0.024341001725896583 55.21754291823743 -1.7420770774066006 0.19842701117850925 KPY(ph)S(ph)AK ddPTM_BT-474_Trastuzumab_2h_R1 1 KPYSAK 6 1 A8K8P3-9;A8K8P3-2;A8K8P3;X6RJF9;F8WBU4;E5RJU6;A8K8P3-5 A8K8P3-9 SFI1 Protein SFI1 homolog 2 KPY(1)S(1)AK 61.837 0.06289199999999999 185890000.0 47839.0 190850.0 173040.0 255930.0 201460.0 136080.0 137020.0 379550.0 67632.0 194470.0 True False 47581.44013941257 197202.32687873865 197402.52790935745 288330.71175890556 227114.7368530278 126673.10989786386 130391.8191327692 407873.94831584767 50964.99982236961 182058.75810585657 0.2613521076077358 1.0831795675771718 1.084279218221292 1.5837233800708341 1.2474804245394984 0.6957814675645037 0.7162073414614525 2.240342362868875 0.27993709477429496 1.0 17.474044619075137 4.783077214333299 2.7021528992952915 1.1900883962976965 0.017359590546417683 0.18241671280727234 0.5105291106184753 0.8670053842020946 7.636443293304697 0.12622951103852112 2.385798952038538 60684.42123916627 -4.783077214333299 -1.1727288057512788 KPYCNAHYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KPYCNAHYPK 10 1 Q14847;Q14847-2;C9J9W2;F6S2S5;O76041-2 Q14847;O76041-2 LASP1;NEBL LIM and SH3 domain protein 1;Nebulette 0 ; 84.17 0.0098048 39923000000.0 13946200.0 15944200.0 17921000.0 12064800.0 8840200.0 13221700.0 15251300.0 11700700.0 24031600.0 13626800.0 False True 13871115.208768472 16474893.05852755 20444121.027875613 13592202.442968188 9965947.07002948 12307714.999534015 14513536.353376163 12573865.648950718 18109334.186941948 12757125.957509562 1.0873229013313264 1.2914266985683793 1.6025648015053935 1.0654596096518945 0.7812062923281684 0.9647717707364174 1.1376807285368753 0.985634671228517 1.4195465536092613 1.0 23.604800006333207 3.5151946011746804 24.583172973791363 1.0353568862636462 1.3252830022081226 0.30391035015313106 0.19131793313006054 531.0158581698695 342864.42243065324 0.050959672166908984 0.07892426359710515 3274.874044509386 -3.5151946011746804 0.28992611594447637 KQAEEIGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 KQAEEIGEK 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 131.83 0.00051666 1400820000.0 1564480.0 1470340.0 1276530.0 1231340.0 1336230.0 1625450.0 1682790.0 1600810.0 2256430.0 1685340.0 False True 1556057.0135100672 1519279.378060699 1456254.3282023333 1387227.5177478641 1506390.9700442853 1513086.4673977299 1601387.01881793 1720270.570948471 1700363.0611129247 1577780.1583078348 0.9862318304084483 0.9629220966310809 0.9229767027645742 0.8792273818652037 0.9547533996497242 0.958997018330178 1.0149620721149222 1.0903106886535174 1.0776932718792458 1.0 20.589464769216566 2.141565535404115 2.496379673446157 1.0648328122813577 0.9395033752761321 0.679302294306261 0.03487216184328639 0.15462874770109478 1.9225621073958783 0.01677438372108589 0.01074652527692024 138.53692235379745 -2.141565535404115 -0.12532943700522559 KQAEILQESR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQAEILQESR 10 1 E5RJD8;O75347;E5RIW3;O75347-2 E5RJD8 TBCA Tubulin-specific chaperone A 0 ; 114.71 0.0021156 1636260000.0 1881700.0 2017550.0 1889940.0 1682070.0 1670420.0 2317800.0 2014530.0 1741130.0 2764200.0 2278500.0 False True 1871569.1362765257 2084702.9321152684 2156027.124347033 1895019.8895334755 1883138.0856449686 2157575.9415143216 1917079.487648062 1871061.961878994 2082999.948382335 2133084.1792780086 0.8774005050799267 0.9773186414147443 1.0107557616768739 0.8883943296484851 0.8828240835213357 1.0114818545251236 0.8987359740753136 0.8771627393121907 0.9765202745478962 1.0 21.02450947013185 3.7183418068156873 24.962540727208673 0.9246413313920012 0.9573743548944988 0.012582664991966586 0.05616282589647425 2305.775985064354 2846757.39249441 0.014877314253197532 0.02308265549867272 5228.07497155399 -3.7183418068156873 0.03273302350249763 KQAGPASVPLRTEEEFKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQAGPASVPLRTEEEFKK 18 3 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 89.846 0.0012334000000000002 401700000.0 211810.0 190240.0 187550.0 150590.0 153950.0 227940.0 226120.0 186750.0 291650.0 215580.0 False True 210669.63849430336 196572.02339749128 213955.40978617623 169654.67855965957 173554.61996686005 212183.0443130449 215181.71173771573 200686.23329728527 219776.7654097779 201821.49983267652 1.0438414077239666 0.9739895083549701 1.0601219888047584 0.8406174698945088 0.8599411862004217 1.0513401421006126 1.0661981598398373 0.9943748979353911 1.088966069482129 1.0 17.622720345857207 2.634783205645108 24.207435521953823 1.0382160707385715 0.956052473533408 0.26935820371022934 0.06952363940508807 40.473973503114706 9425.55157823059 0.023671227759812785 0.022317448161043467 431.3037216760217 -2.634783205645108 -0.08216359720516342 KQDADSLQR ddPTM_BT-474_Trastuzumab_2h_R1 6 KQDADSLQR 9 1 P14324-2;P14324;A0A087WVN4;A0A087X1D8 P14324-2 FDPS Farnesyl pyrophosphate synthase 0 ;;;;; 179.42 7.9887e-05 6954710000.0 8986970.0 9264400.0 8669260.0 8184410.0 8501220.0 9346520.0 10725260.0 8890950.0 12090350.0 10324080.0 False True 8938585.15206623 9572759.953551931 9889816.45344126 9220555.466833537 9583799.976321332 8700417.071741508 10206438.199328026 9554437.83632931 9110845.244889783 9665188.37551043 0.9248226526773902 0.9904369766664152 1.023240941531982 0.9539964570371438 0.9915792226672665 0.9001808070069849 1.0559999249666991 0.9885412953293554 0.9426453878513907 1.0 23.204366420308673 2.2261591098720603 24.99999417391795 0.9972080384066748 0.968728386441799 0.12355388786914345 0.041623361070259754 568.9534475516544 1146936.3198859433 0.01539988312823686 0.011457300385798414 168.32906452433124 -2.2261591098720603 -0.028479651964875785 KQDAETPPPPDPPAPETLLAPPPLPS(ph)TPDPPRR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQDAETPPPPDPPAPETLLAPPPLPSTPDPPRR 33 2 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 KQDAETPPPPDPPAPET(0.066)LLAPPPLPS(0.467)T(0.467)PDPPRR 49.191 0.041283 185190000.0 31833.0 32579.0 31869.0 22749.0 30639.0 33635.0 35831.0 36633.0 43331.0 35268.0 True False 31661.614664978773 33663.37232057863 36355.87818968625 25629.021067492475 34540.69503841915 31309.891618273487 34097.71764228765 39366.740478604836 32652.6556556526 33017.16604554609 0.958944042056869 1.0195718273985455 1.101120494094936 0.7762332185669142 1.0461435421432417 0.9482913092868881 1.032726963763364 1.192311309344349 0.9889599734456114 1.0 15.010928674619011 1.9989480557161254 15.612742116359273 1.089473673258105 0.9781225441056917 0.12157575198618675 0.09600756971468946 0.4950217489055357 7227.997397447365 0.03568057800936396 0.025621595430354728 99.75807399113896 -1.9989480557161254 -0.1113511291524133 KQDDS(ph)PPRPIIGPALPPGFIK ddPTM_BT-474_Trastuzumab_2h_R1 3 KQDDSPPRPIIGPALPPGFIK 21 2 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 KQDDS(1)PPRPIIGPALPPGFIK;KQDDS(1)PPRPIIGPALPPGFIK;KQDDS(1)PPRPIIGPALPPGFIK 127.83 9.9989e-06 7536880000.0 3819350.0 3248130.0 2996750.0 2900240.0 2836930.0 4035590.0 4099280.0 3860420.0 5713390.0 4031180.0 True False 3798787.04396968 3356242.043513951 3418666.351782051 3267410.086631692 3198196.219698507 3756619.162057037 3900982.1656296803 4148504.143215563 4305401.590003672 3773906.64113317 1.0065927446549232 0.8893283174875228 0.9058693488918811 0.8657898558006206 0.847449744739367 0.9954192086026425 1.0336721431080111 1.0992598751647749 1.1408341539447602 1.0 21.847627303327677 2.3552456040679735 2.24509911435799 1.0843005005847008 0.9010940079113565 0.6799231412166218 0.05325944720669615 0.16287578437574732 1.6837132849485292 0.02223781607710045 0.016774644918510433 226.59253811071068 -2.3552456040679735 -0.18320649267334432 KQDEDKDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQDEDKDKR 9 3 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 0 ; 94.692 0.0037455 558900000.0 1533410.0 886790.0 802060.0 719270.0 710790.0 716250.0 1197670.0 1102610.0 2316470.0 1309440.0 False True 1525154.290937867 916306.2690741251 914983.0763695043 810329.5082515848 801304.8933175999 666737.3233711426 1139734.1265562964 1184892.357140131 1745607.0076077082 1225870.4181320157 1.2441398930744252 0.7474740033864222 0.7463946130323935 0.6610237887022079 0.6536619869974758 0.5438889082478379 0.9297345867053599 0.9665722735569987 1.423973514482606 1.0 20.225375054879215 1.614235659380492 2.4227211588348876 1.2041106773331938 0.7604193943969121 0.39212797403071564 0.20614215765060606 0.23924207922372662 3.151643047472265 0.14483863761708768 0.05569870705876769 41.13728820821866 -1.614235659380492 -0.4436912829362817 KQDEWIK ddPTM_BT-474_Trastuzumab_2h_R1 3 KQDEWIK 7 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ;; 117.04 0.008532399999999999 2974410000.0 5479110.0 4747630.0 4525020.0 3865280.0 3582730.0 5306230.0 5549760.0 4858380.0 6986380.0 5268170.0 False True 5449611.080546346 4905651.994547054 5162103.48382108 4354624.051683909 4038969.428995575 4939422.809621856 5281296.906657986 5220936.985953756 5264680.261695738 4931950.880292742 1.1049605344453224 0.9946676505131522 1.046665631737735 0.882941488546503 0.8189395083261326 1.0015150048146202 1.0708332331048092 1.0585946844717684 1.0674640501251802 1.0 22.233727000632047 2.4644340834180163 11.646492874029589 1.0528497522747304 0.9644741020165591 0.19175169584546425 0.07654712329772337 0.7587378979174687 682.1676840957932 0.028392070521570625 0.02399048425520958 291.36278750266587 -2.4644340834180163 -0.08837565025817129 KQDFDEDDILKELEELSLEAQGIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQDFDEDDILKELEELSLEAQGIK 24 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 ; 168.57 5.7994e-12 47326000.0 84348.0 50638.0 50679.0 44218.0 43956.0 74079.0 82174.0 75620.0 151624.0 76111.0 False True 83893.87973994379 52323.45521868258 57814.1626902353 49815.99426622631 49553.536052376134 68958.09309320894 78198.92968483572 81263.14839057943 114258.29685750768 71253.53081809457 1.1773996148221646 0.7343278939012975 0.8113866362332406 0.6991372033675519 0.6954537618477173 0.967784926606013 1.097474451960455 1.1404788991866064 1.6035457547949639 1.0 16.120673885188502 2.088208459654445 1.608523958483272 1.275607535154584 0.8144292196542124 0.47990134817663377 0.19282622705894958 0.3107905511454973 1.527048771597295 0.11429722752495478 0.06021467423897882 122.52041513519586 -2.088208459654445 -0.46117831550037147 KQDFPLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQDFPLVK 8 1 P36543;C9J8H1;P36543-3;P36543-2 P36543 ATP6V1E1 V-type proton ATPase subunit E 1 0 99.015 0.011405 571710000.0 530390.0 530420.0 494190.0 467580.0 534950.0 681480.0 591940.0 556190.0 783450.0 674690.0 False True 527534.4391718693 548074.7090543393 563767.6564235159 526775.5800579428 603072.7116029356 634370.8916313663 563305.6007696063 597695.7220755927 590379.2451921493 631630.7065688292 0.8351944161131177 0.8677138450592652 0.8925589756173162 0.8339929876422809 0.9547868799459931 1.004338270818755 0.8918274474488718 0.9462740108415888 0.9346905383989834 1.0 19.26872178359844 3.22984677753132 24.99997819906816 0.9501598277636664 0.8606181054677756 0.6645201920521333 0.03394650992583414 119.8977618555714 343985.87339443486 0.009690564396029 0.011751325853685834 1697.644604582494 -3.22984677753132 -0.08954172229589075 KQDIENILHWNVTQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQDIENILHWNVTQHK 16 1 P21399 P21399 ACO1 Cytoplasmic aconitate hydratase 0 94.882 0.0016031 131340000.0 244320.0 249150.0 223690.0 227430.0 221800.0 284790.0 291370.0 206660.0 354770.0 273480.0 False True 243004.60826650404 257442.8071356447 255183.60765166537 256222.61468107675 250044.91528840293 265103.13762354985 277275.3199585093 222082.01859821653 267341.6871744449 256026.27226199248 0.9491393446444304 1.005532771543862 0.9967086791410813 1.0007668838723058 0.9766377218996151 1.035452866931832 1.0829955750586902 0.8674188654004981 1.044196303810858 1.0 17.96593233512034 -0.7987012179855668 0.0031702457702741725 1.0395676408037757 0.9450300160381183 0.0 0.05551467770582725 4738448.521779062 3302.9709909358626 50039.9538886282 48462.27434908937 0.1589639998731878 0.7987012179855668 -0.09453762476565741 KQDPPVTHDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KQDPPVTHDLR 11 1 P25685;P25685-2;M0R080;M0QZD0;M0QYT3;M0QXK0;M0R128;A0A1B0GX60;M0R1D6 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ;; 134.98 8.4157e-05 1239380000.0 734940.0 785010.0 637830.0 731610.0 668320.0 829470.0 824790.0 734830.0 905370.0 908620.0 False True 730983.1646995103 811138.5833014344 727630.9198822558 824231.7509863367 753426.5905570119 772130.6912623553 784891.7566962247 789666.7459911334 682253.6948364493 850631.0936912807 0.85934216386029 0.9535726936356511 0.8554012723949811 0.9689649921091116 0.8857266048053174 0.9077151035141733 0.9227169833284806 0.9283304500008401 0.8020559087204723 1.0 19.698174066167862 KQDS(ph)GHLDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQDSGHLDLR 10 1 Q86U44;F5H6D8;B4DTN4;B4E349 Q86U44 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 KQDS(1)GHLDLR;KQDS(1)GHLDLR 57.328 0.07247200000000001 379510000.0 818190.0 813380.0 691880.0 772070.0 718100.0 971030.0 934370.0 839900.0 1245300.0 972690.0 True False 813784.9559494543 840452.861601406 789290.6900712324 869813.9828378792 809545.7784878347 903904.9816587514 889170.9534599737 902577.6029257829 938412.5011650809 910612.0914381947 0.8936680762323127 0.9229537686832368 0.8667693933479943 0.9551970493430632 0.8890127707499044 0.9926345039314706 0.9764541475126279 0.9911768264577704 1.0305293658938561 1.0 19.796477090550024 2.603345604835111 1.0520542217379003 1.0074063850505552 0.9006527205967233 0.7373679844735288 0.026992845814478545 0.24974543398438784 0.5695567061003204 0.014403629943135574 0.011585982823868218 401.1858481270674 -2.603345604835111 -0.10675366445383194 KQDSGHLDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQDSGHLDLR 10 1 Q86U44;F5H6D8;B4DTN4;B4E349 Q86U44 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 0 122.51 0.00031589 121390000.0 235300.0 306240.0 265490.0 265620.0 238000.0 296750.0 326430.0 243690.0 345660.0 318740.0 False True 234033.17094428756 316433.0132740109 302868.68431955227 299247.4647653679 268307.8892634797 276236.3709743619 310639.33381630306 261875.38523274686 260476.72460669887 298397.7403129565 0.7842994075586361 1.0604403804872624 1.0149831697850884 1.002847623616453 0.8991619339411924 0.9257321140724726 1.0410244175793948 0.8776051218018428 0.8729178858174782 1.0 18.186877084923946 3.244427308474257 24.96460881976367 0.9332093623995729 0.9759382294920403 0.022645057396703305 0.08375069316812084 464.5199402289805 1976664.0039590392 0.022958704654297023 0.030271752560429358 1755.607018870422 -3.244427308474257 0.04272886709246748 KQEAEWK ddPTM_BT-474_Trastuzumab_2h_R1 6 KQEAEWK 7 1 P09496-2;F8WF69;P09496-4;P09496-3;P09496;P09496-5;C9J8P9 P09496-2 CLTA Clathrin light chain A 0 ;;;;; 122.52 0.006948 5676490000.0 7410610.0 6760140.0 6042370.0 5617530.0 5204410.0 7308790.0 7559450.0 7182680.0 10800210.0 7674310.0 False True 7370712.099156179 6985147.1733090775 6893083.174778457 6328708.722021675 5867160.764545158 6803550.550341041 7193770.523596656 7718688.054510008 8138642.960899495 7184528.965492655 1.0259144523681043 0.9722484531496485 0.9594342521111664 0.8808801178780835 0.8166381947550317 0.9469723878932835 1.0012863137094148 1.074348519100267 1.132801189888642 1.0 22.776462142649223 2.0007140525288736 2.497830300022468 1.0763966477992608 0.9287470996254862 0.5029584910639646 0.06035398716261847 0.2428766690275121 2.850889659142846 0.03398059016230709 0.01889713811820846 100.16455190917614 -2.0007140525288736 -0.14764954817377463 KQEDSVTELTVEDSGESLEDLMAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQEDSVTELTVEDSGESLEDLMAK 24 1 Q9GZZ9-2;Q9GZZ9 Q9GZZ9-2 UBA5 Ubiquitin-like modifier-activating enzyme 5 0 ; 239.19 2.7153e-37 108891000.0 206732.0 159166.0 154957.0 130102.0 137200.0 206009.0 195008.0 173627.0 293158.0 197375.0 False True 205618.97788208435 164463.74409212128 176773.59868961116 146572.89986034125 154671.60675188832 191768.08272302392 185574.71803709725 186583.92840004133 220913.1390159422 184778.35851876074 1.1127871225309518 0.8900595578968903 0.9566791268559903 0.7932362914970886 0.8370655957320042 1.0378276128237902 1.0043098094642704 1.0097715441123873 1.1955574277574972 1.0 17.495436270768845 2.67867965881599 10.387087409280367 1.0430873699817989 0.9116697688770132 0.32185421901330047 0.09501437481613886 0.8685373349382695 148.20162150376333 0.03106642264540252 0.02929311788372873 477.17717180975063 -2.67867965881599 -0.13141760110478562 KQEEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 KQEEEER 7 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;Q5JVM0 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ; 107.01 0.012145 274330000.0 851580.0 767770.0 622400.0 647650.0 659840.0 555930.0 795850.0 747050.0 1067110.0 907150.0 False True 846995.1878994321 793324.7603232338 710028.510002219 729642.4235949493 743866.712821909 517499.86761845654 757351.695057761 802798.6644430349 804135.0390414122 849254.9103498113 0.9973391705801873 0.9341420940344758 0.8360605294701865 0.8591559668396934 0.8759051066487299 0.6093575218838551 0.8917837104360162 0.9452976422736951 0.9468712270502927 1.0 19.695838129156645 1.7759556569034545 3.859913006914506 0.9609775344192643 0.8496623428428369 0.21195629320625886 0.09506612355703031 0.3598513002316264 10.482673739018468 0.05257660031866646 0.027016363714603284 59.69743301523469 -1.7759556569034545 -0.11131519157642733 KQEELQQLEQQR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQEELQQLEQQR 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 205.31 1.6555999999999998e-07 4274610000.0 2832010.0 2669540.0 2556260.0 2418190.0 2411930.0 3052920.0 3088280.0 2658400.0 3085640.0 2785140.0 False True 2816762.7728258898 2758394.0251289923 2916159.18858977 2724332.6060573915 2719074.988870859 2841878.826200671 2938888.0980247306 2856783.3070816747 2325225.367457659 2607389.9807216814 1.080299760930376 1.0579138700093937 1.118420800168384 1.0448504543625432 1.0428340252033435 1.0899324025990493 1.127137911763892 1.0956486479598135 0.8917827347077847 1.0 21.314174948582778 1.249425609517907 24.999544691358118 0.9458913648531981 1.0831014210110534 0.6959160248164412 0.036018233985867024 96.37407669644182 221752.81108627564 0.024209550654925263 0.008652917828296 17.759290426107643 -1.249425609517907 0.1372100561578553 KQEETAVLEEDSADWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQEETAVLEEDSADWEK 17 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 121.74 9.4984e-05 63643000.0 139130.0 113720.0 109090.0 89615.0 97960.0 146080.0 133210.0 124990.0 183710.0 157000.0 False True 138380.93953879632 117505.10145480825 124448.92377272196 100960.249811567 110434.62534559015 135981.83343533205 126766.12338838275 134317.38848635982 138437.1320878803 146980.12558553743 0.9414942257500203 0.7994625190765964 0.8467057928882835 0.6868972890679126 0.7513575383450122 0.9251715692418241 0.862471187062697 0.9138472834423568 0.9418765396775676 1.0 17.165261563800236 1.70583974139384 0.9009949697795724 0.9862224579148562 0.8090845076699733 0.44214507792553115 0.06895248743642027 0.5231643131666257 0.8070018200438867 0.06337249551613779 0.02646773905101124 50.797196170659966 -1.70583974139384 -0.17713795024488288 KQEFLEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQEFLEQK 8 1 Q9BY43;Q9BY43-2;H0YI89;E9PQI5;E9PQ80;E9PSI1 Q9BY43 CHMP4A Charged multivesicular body protein 4a 0 ; 125.97 0.001987 1080870000.0 1496790.0 1338770.0 1237330.0 1102150.0 1072500.0 1439440.0 1522440.0 1415730.0 2256100.0 1545530.0 False True 1488731.448949001 1383330.1501464453 1411535.3089348415 1241682.0769940147 1209076.5177944633 1339934.9008772888 1448793.7609144165 1521378.9615312759 1700114.3851911519 1446892.952205195 1.0289160968543252 0.9560694507759718 0.975563055154519 0.858171349236016 0.8356364691332016 0.9260774260010787 1.0013137175810585 1.0514799724558457 1.1750104820125251 1.0 20.464526757928052 1.8796577773699934 2.189581039369053 1.0885163317301512 0.9265321413990215 0.4955624364173453 0.06569671594983198 0.25405133538054836 2.2532733019202857 0.04138348965763513 0.019920691768392673 75.79800538366776 -1.8796577773699934 -0.16198419033112965 KQEGPATQVDSAVGTLPAT(ph)SPQSTSVQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 Q13428-6 Q13428-6 TCOF1 Treacle protein 1 KQEGPATQVDSAVGTLPAT(0.658)S(0.335)PQS(0.005)T(0.001)SVQAK 141.23 4.796e-08 290500000.0 87412.0 101250.0 108290.0 107100.0 85592.0 105160.0 110170.0 92902.0 120420.0 115270.0 True False 86941.38350438613 104620.04504308256 123536.29072644658 120658.84901878958 96491.63385646953 97890.53672001316 104840.65620972977 99834.81898679731 90744.10454532973 107913.3699123881 0.8056590538778602 0.9694817716101416 1.1447728008748341 1.1181084337997154 0.8941582858065543 0.9071214882779381 0.9715261074216015 0.92513855389606 0.8408976998772476 1.0 16.719514092843504 3.201961032033599 24.999908001807466 0.9224446750921327 1.0163089093713107 0.16514171476462236 0.09462991516892573 303.4278067741932 207260.24539786435 0.02877848834683018 0.034397768405918426 1592.0658692547127 -3.201961032033599 0.093864234279178 KQEGPATQVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 Q13428-6 Q13428-6 TCOF1 Treacle protein 1 KQEGPATQVDSAVGTLPAT(0.027)S(0.961)PQS(0.008)T(0.003)S(0.001)VQAK;KQEGPATQVDSAVGTLPAT(0.067)S(0.859)PQS(0.034)T(0.034)S(0.007)VQAK 164.25 3.2068e-12 740530000.0 566340.0 464100.0 449570.0 436680.0 426860.0 616280.0 599680.0 539600.0 743550.0 624340.0 True False 563290.8883662892 479547.28794562566 512865.5482675086 491963.64322619035 481218.0908025584 573678.0141670761 570671.1873999352 579867.6920332809 560312.065559541 584494.0866756331 0.9637238446158811 0.8204484850703921 0.87745207344095 0.841691395073441 0.823307030426147 0.9814949838584776 0.9763506601849182 0.9920847879425687 0.9586274323943469 1.0 19.156828903527543 2.726563508504734 24.579211104126344 0.9816895410087304 0.8621922477288837 0.6896122383410825 0.039013013735523995 318.5431139146793 652617.8309966984 0.011955224606492875 0.011356582563709609 532.7991318342041 -2.726563508504734 -0.1194972932798467 KQELAETLANLER ddPTM_BT-474_Trastuzumab_2h_R1 1 KQELAETLANLER 13 1 Q9HAF1-3;Q9HAF1-2;Q9HAF1;Q9HAF1-4 Q9HAF1-3 MEAF6 Chromatin modification-related protein MEAF6 0 130.06 4.7673e-05 0.0 307300.0 344390.0 340940.0 331060.0 335250.0 348900.0 362300.0 345950.0 445280.0 368980.0 False True 305645.5309442397 355852.81296184857 388941.38849639555 372972.16205565335 377942.1003175694 324781.36422225676 344774.16487959627 371766.54569850524 335546.7104463084 345431.3805003289 0.8848227121158979 1.0301693275417685 1.1259584694738676 1.0797286613492785 1.094116289522253 0.9402196284305082 0.9980974061482755 1.0762384852239888 0.9713845625730259 1.0 18.398039623996663 1.2145842004396628 24.942612280398954 0.9856922459901368 1.0334296731819224 0.053929189938974 0.06975758264353307 788.6591965386451 820417.9502172123 0.06773305933742939 0.016965788335209488 16.39019801473114 -1.2145842004396628 0.04773742719178553 KQELEEICHDLEAR ddPTM_BT-474_Trastuzumab_2h_R1 9 KQELEEICHDLEAR 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;;;;;; 253.79 2.0013000000000003e-24 17923315000.0 7520560.0 7333320.0 6567550.0 6513510.0 6252060.0 8082870.0 8031270.0 7352880.0 9687830.0 8340520.0 False True 7480070.140572764 7577405.123114449 7492203.953832053 7338119.698154766 7048222.782137115 7524120.2219293695 7642766.787669217 7901589.242768097 7300394.106771146 7808220.872921579 0.9579736872599467 0.9704393928445871 0.9595276665154987 0.9397940731419249 0.9026669323071931 0.9636151876828366 0.9788102708741058 1.0119577009111402 0.9349625510836221 1.0 22.896562432645272 2.3425707783978638 3.805618774778737 0.9856270725153112 0.9467716489939948 0.2932860157578515 0.02530806494311516 0.27420999502831866 7.536191472117858 0.009577660463559743 0.007762219689916246 220.0750343923134 -2.3425707783978638 -0.038855423521316435 KQELEEILHDLESR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQELEEILHDLESR 14 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;;; 237.59 1.7357e-17 665102000.0 1439109.0 1561110.0 1349706.0 1383298.0 1352883.0 1726486.0 1652305.0 1560901.0 2125564.0 1803986.0 False True 1431360.9970440408 1613070.6026390763 1539732.8729451413 1558423.3849672596 1525164.6308842218 1607138.086530889 1572376.6947319407 1677383.3587146783 1601747.2332983678 1688854.0690098815 0.8475338534626617 0.9551272855592345 0.9117027345339761 0.9227697132416603 0.9030766238899343 0.9516145391253965 0.9310317117297011 0.9932079920309941 0.9484225207435587 1.0 20.687613242039298 7.999999999999998 0.10215688288618979 1.041505541716873 0.5847721683559858 0.5795766915018732 0.02737987359066379 86.0678471329138 0.6203931163124163 0.3069044990047871 5.517732512747799 99999999.9999996 -7.999999999999998 -0.45673337336088726 KQELELVVSELEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQELELVVSELEAR 14 1 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;M0QY43 Q7Z406 MYH14 Myosin-14 0 ; 205.52 1.9439e-08 166089000.0 372580.0 384680.0 346490.0 336920.0 342710.0 431950.0 419140.0 369170.0 509230.0 455030.0 False True 370574.0706775297 397483.841256029 395272.7802549311 379574.03745481395 386352.0870986855 402090.31320092897 398864.59692971 396719.3400072763 383737.0898324054 425989.59582921705 0.869913430529172 0.9330834488628772 0.9278930380576698 0.8910406290931774 0.9069519323508958 0.9438970273868624 0.9363247385262863 0.9312888011619995 0.9008132911918556 1.0 18.70045866960884 -4.9999999999989875 0.18339852592366832 1.335329077044671 0.9018401903668826 0.5809859849810363 0.02177356471904235 97.9417775402242 0.9489438073382883 12.007181088978056 0.06400920048915326 1.0000000000023315e-05 4.9999999999989875 -0.4334888866777885 KQELLEALTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQELLEALTK 10 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 156.69 0.0077886 0.0 5294900.0 5110300.0 4915100.0 4300300.0 3578900.0 5379000.0 5872800.0 4899100.0 8024500.0 5404100.0 False True 5266392.84671869 5280393.246258411 5607103.357184941 4844717.539080306 4034651.7011977653 5007162.390804017 5588710.2277253475 5264695.7191257235 6046969.49779106 5059205.711317214 1.040952502670134 1.043719814445657 1.1082971670122257 0.9576043781423815 0.79748718107517 0.9897131440224345 1.1046615904990096 1.0406170493025886 1.1952408822326128 1.0 22.27047947078671 -0.46012047518123667 8.145431294377435 1.00000003013184 1.0275066061641547 0.0074654209124660476 0.10022671343226196 0.0 0.0 0.10162797417679938 0.023953943232888734 0.3466406774797123 0.46012047518123667 0.027506576032314767 KQESGISHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQESGISHR 9 1 Q9BZI7-2;Q9BZI7 Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B 0 ; 125.75 0.00031997 81588000.0 202263.0 232360.0 229040.0 221940.0 215120.0 208361.0 236220.0 228650.0 300990.0 259390.0 False True 201174.03848153196 240093.9621354138 261286.84114863176 250037.58124397934 242514.2568838645 193957.49449903605 224793.1361519688 245713.0240611743 226815.04755936566 242835.50812504816 0.8284374885485749 0.9887102754831777 1.075982846026299 1.0296582372756724 0.9986770829205989 0.7987196600554711 0.925701261267819 1.011849650647649 0.9340275205657619 1.0 17.889619866584052 KQEVDLQQLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQEVDLQQLIR 11 1 C9JSR4;O60443 C9JSR4 DFNA5 Non-syndromic hearing impairment protein 5 0 53.08 0.091058 731620000.0 465310.0 602990.0 543600.0 620290.0 631670.0 526210.0 569620.0 451720.0 415140.0 544220.0 False True 462804.8226608016 623060.1576348478 620134.1549440976 698818.6504002329 712109.4302985811 489834.34126510134 542065.3044402866 485429.6401876823 312834.30959099974 509487.41366981616 0.908373416582047 1.2229157009924387 1.2171726686578923 1.371611214822113 1.3976977864267288 0.961425794087523 1.0639424839483536 0.9527804361076425 0.614017738608433 1.0 18.958686981062588 2.0371502440407863 1.3571629856088672 0.8340173236552264 1.2179826118771975 0.4472977549274426 0.16754571704493781 0.39416390980276134 1.3557300577641294 0.11714874946447745 0.056779445929102834 108.93068735298952 -2.0371502440407863 0.38396528822197107 KQEVPHDGPMCDLLWSDPEDTTGWGVSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQEVPHDGPMCDLLWSDPEDTTGWGVSPR 29 1 P60510;H3BTA2;H3BV22 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit;Serine/threonine-protein phosphatase 0 173.53 8.7485e-13 273860000.0 116970.0 120540.0 116920.0 104430.0 126560.0 145860.0 128900.0 114340.0 155670.0 130780.0 False True 116340.24651658876 124552.10103203115 133381.3197131418 117650.82729255086 142676.66582010937 135777.04151750752 122664.61455418167 122872.63140675536 117307.21437113007 122433.50843360898 0.9502320729432958 1.017304025879247 1.0894184232698796 0.9609365017612675 1.1653400090015185 1.1089859569868834 1.0018876051460863 1.0035866241093998 0.9581299749712008 1.0 16.901638933080505 2.0273667654127356 24.472226956515954 0.9914122866934302 1.0508551731030498 0.17329288588423686 0.06216013252546679 309.04168267359984 276353.1173985667 0.02399201123362651 0.01771884742080731 106.50420757024706 -2.0273667654127356 0.05944288640961959 KQEVQAWDGEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 KQEVQAWDGEVR 12 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ;; 169.04 7.2005e-05 5472100000.0 5048700.0 5218700.0 5109300.0 4829700.0 4862300.0 5809100.0 5730400.0 5353300.0 6198200.0 5879100.0 False True 5021518.360163306 5392401.274729228 5828645.029168282 5441139.524799709 5481485.083889989 5407530.5901505165 5453198.659746181 5752790.429506591 4670736.661624833 5503890.804649264 0.9123579188601477 0.9797435062073073 1.0590044817467474 0.9885987418579332 0.9959291124125595 0.9824923462476128 0.9907897618789491 1.0452224859997359 0.8486245144397403 1.0 22.39202041706155 4.70646943260772 4.409505446981748 0.994564566908701 0.9086585275349384 0.14694272689653742 0.05320212466409044 0.29984177557476216 13.173069963168157 0.012081459810649892 0.07371888515943337 50870.90133983249 -4.70646943260772 -0.08590603937376262 KQEYLENR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQEYLENR 8 1 Q96CF2 Q96CF2 CHMP4C Charged multivesicular body protein 4c 0 ; 125.97 0.001987 636710000.0 1642890.0 1430500.0 1500050.0 1361960.0 1224380.0 1395810.0 1587350.0 1561000.0 2257200.0 1558410.0 False True 1634044.862782239 1478113.3277444902 1711244.0013316646 1534383.9963550963 1380297.5355311728 1299320.9400833147 1510563.816234136 1677489.7465973897 1700943.304930396 1458950.9395780726 1.1200135785613212 1.0131343608935606 1.1729277214945657 1.0517036280869314 0.94608906858126 0.8905857660018898 1.0353767047649935 1.1497917449386736 1.1658673768854129 1.0 20.476499939613934 -1.7431779020409093 7.434260790061452 0.999267993449437 1.059401522643819 0.039449295470142975 0.08954493910956784 0.0011880945210211986 4.104365846961873e-05 0.0948161927040552 0.022079722917195673 0.018064339965850943 1.7431779020409093 0.060133529194381974 KQFS(ph)LENVQEGEILHDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQFSLENVQEGEILHDAK 18 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 KQFS(1)LENVQEGEILHDAK 133.47 7.7223e-06 139750000.0 127190.0 88326.0 84861.0 86907.0 98540.0 127020.0 95465.0 98781.0 201630.0 131640.0 True False 126505.22317213756 91265.87751580546 96808.69117496519 97909.41728922457 111088.48490766084 118239.40637291805 90846.99323828514 106152.53981975425 151940.98820357796 123238.62249732582 1.0265063062911355 0.7405622982988621 0.7855385691045506 0.7944702342916007 0.9014096608396558 0.9594346640436017 0.737163329136176 0.8613577275424161 1.2329007345637522 1.0 16.911094936258234 1.2884835692592365 9.778961480545735 1.1159207994971847 0.8434196400393446 0.5163424442864524 0.10265295370533836 0.24181978573895208 45.618042192354245 0.06542108308124049 0.023804527819753653 19.430481787487526 -1.2884835692592365 -0.27250115945784015 KQGGLGPMNIPLVSDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQGGLGPMNIPLVSDPK 17 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ; 150.59 4.519e-07 1908760000.0 4255900.0 3604600.0 3583200.0 3221800.0 3436500.0 4425900.0 4213000.0 4256100.0 5922200.0 4394400.0 False True 4232986.707274945 3724576.931973284 4087683.4142672764 3629679.5496614035 3874117.905268695 4119947.9504479486 4009201.094777093 4573711.794037883 4462753.16341432 4113945.62976488 1.0289359870604 0.9053539514536926 0.9936162949486756 0.8822867087499274 0.941703720447591 1.0014590179898444 0.9745391542780857 1.1117579583323953 1.0847866172867664 1.0 21.97209129653974 1.855609322704665 5.102117722094463 1.0746306839413444 0.9564155604156446 0.4847540044844487 0.04913113172090284 0.1648219151718458 5.948607140521065 0.021840757772651532 0.01272362958995345 71.71488770403376 -1.855609322704665 -0.11821512352569985 KQGGLGPMNIPLVSDPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQGGLGPMNIPLVSDPKR 18 2 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ; 191.35 1.2930000000000001e-14 7207900000.0 3405900.0 3929100.0 3787800.0 3777600.0 3977100.0 4541500.0 4974900.0 4272500.0 6878800.0 5108000.0 False True 3387563.0128310677 4059877.7183088935 4321089.315852198 4255843.772673949 4483560.110881451 4227556.794541075 4734245.081036445 4591335.645315396 5183611.911197594 4782003.066821187 0.708398335487253 0.8489910319124235 0.9036149194117143 0.8899709417173168 0.9375903880090724 0.8840556426809911 0.9900129746640901 0.9601281264688656 1.0839833933112417 1.0 22.189183624611335 6.552662567291349 0.29205157667063625 1.0180599549077696 8.589852120978717e-16 0.7901229967632347 0.04403403308626726 10.392590726083226 0.3124118453228861 0.046822146920077794 4.627082282410158 3569953.565702294 -6.552662567291349 -1.0180599549077687 KQGGS(ph)PDEPDSK ddPTM_BT-474_Trastuzumab_2h_R1 6 KQGGSPDEPDSK 12 1 Q9ULX6;Q9ULX6-2;V9GZ50 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 1 KQGGS(1)PDEPDSK;KQGGS(1)PDEPDSK;KQGGS(1)PDEPDSK;KQGGS(0.811)PDEPDS(0.189)K;KQGGS(0.999)PDEPDS(0.001)K;KQGGS(1)PDEPDSK 138.91 4.0513e-05 4611890000.0 6238450.0 4234220.0 3607450.0 3464850.0 3396070.0 4926550.0 5698270.0 5391580.0 8949210.0 5309580.0 True False 6204862.878356951 4375153.45305996 4115347.6034824983 3903499.654740922 3828539.384416073 4585989.194351282 5422622.910594689 5793927.077488498 6743797.108770231 4970718.058639863 1.248283005625708 0.8801853980543675 0.8279181307274911 0.7852989464884348 0.7702185759181192 0.92260094824331 1.090913394528452 1.1656116901295122 1.3567048119030787 1.0 22.245022844614844 2.1189398719222936 2.5203938955552543 1.1872934996633218 0.8865938312446009 0.4032139393197617 0.14923860280774473 0.2695626566514182 3.3913248234705455 0.07127280956057241 0.04480011755372919 131.50427518987712 -2.1189398719222936 -0.30069966841872087 KQGGSPDEPDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQGGSPDEPDSK 12 1 Q9ULX6;Q9ULX6-2;V9GZ50 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 0 102.52 0.0037604 95069000.0 260000.0 209520.0 202570.0 182880.0 192890.0 241900.0 286400.0 246410.0 393330.0 290280.0 False True 258600.18888871558 216493.74654248543 231090.09522999582 206032.58924889125 217453.39815139773 225178.02237134968 272545.7378457534 264798.36544462683 296399.09185197315 271754.0818787888 0.9515963370296667 0.7966531543730361 0.8503647622598344 0.7581582135748324 0.8001844779957676 0.8286095311414178 1.0029131336739872 0.9744043718273772 1.0906886468928065 1.0 18.051942179834967 2.233847527524369 5.987961174350143 1.0112020514647966 0.8249948199714207 0.7317414942098073 0.05510309879715613 0.08032333171399351 10.551544849947128 0.020005823669548235 0.015517109756631314 171.33556755378444 -2.233847527524369 -0.18620723149337592 KQGLEQFINK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQGLEQFINK 10 1 O60493-4;O60493;O60493-2 O60493-4 SNX3 Sorting nexin-3 0 75.819 0.060691 856720000.0 587130.0 606540.0 693010.0 534460.0 546760.0 634310.0 699800.0 567890.0 970200.0 711340.0 False True 583968.9573162757 626728.3172388269 790579.7842490978 602122.5812005817 616386.6450995805 590461.6427051306 665948.0005043927 610268.83548699 731107.2100139428 665941.6721911869 0.8769070651410181 0.9411159316350725 1.1871607038012906 0.9041671460795996 0.9255865353364168 0.8866566958669219 1.0000095028040292 0.9163998304520976 1.0978547229344244 1.0 19.345036295989203 1.24161542501849 24.999338021439357 1.0489273630041995 0.9572909761563055 0.15571178979873213 0.08755830111709932 142.78039066869917 1168537.4297857224 0.06450193743341882 0.02127965067816626 17.442768826715103 -1.24161542501849 -0.09163638684789399 KQHYLS(ph)S(ph)EDEPDDNPDVLDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 KQHY(0.315)LS(0.865)S(0.82)EDEPDDNPDVLDSR 64.52199999999999 0.026104 0.0 126150.0 114740.0 93162.0 113100.0 108150.0 134840.0 135680.0 111990.0 163520.0 121680.0 True False 125470.82241658276 118559.05153820528 106278.39982137966 127418.44840359573 121922.26144472836 125518.82817921805 129116.64005206643 120347.26247369716 123222.68705574091 113914.27822451087 1.1014494791363676 1.040774285595175 0.9329682062499501 1.118546773851034 1.0702983273478215 1.1018708992022586 1.133454401542128 1.056472150370015 1.0817141536277335 1.0 16.797589062858382 KQIS(ph)VR ddPTM_BT-474_Trastuzumab_2h_R1 6 KQISVR 6 1 P11216;P11217;P11217-2 P11216 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form 1 KQIS(1)VR;KQIS(1)VR;KQIS(1)VR;KQIS(1)VR;KQIS(1)VR;KQIS(1)VR 113.41 0.016024 15121060000.0 46222500.0 22670680.0 17858110.0 28848490.0 14816150.0 19203880.0 16281660.0 21281860.0 34089120.0 30379060.0 True False 45973643.19580258 23425259.879084535 20372376.66252529 32500705.87609767 16702898.88029876 17876360.976671033 15494053.903818758 22870020.460295394 25688313.146805298 28440242.381978218 1.6164996970959284 0.8236659717755592 0.7163221884295434 1.1427717612101806 0.587298049572282 0.6285586717783664 0.5447933141961162 0.8041429518472558 0.903238193324374 1.0 24.76143042459038 4.737979470975592 4.705547517128621 0.7719411457824208 1.6658369526463805 0.6564696249225719 0.17809522987391715 0.1073192855930134 6.601610038113089 0.04274591414456026 0.3158544733995713 54699.01061559451 -4.737979470975592 0.8938958068639598 KQISVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQISVR 6 1 P11216;P11217;P11217-2 P11216 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form 0 ; 128.75 0.02644 2807500000.0 3210700.0 3984500.0 3504300.0 3555200.0 3689000.0 3742800.0 3749500.0 3300500.0 4526200.0 3965000.0 False True 3193413.9479423077 4117121.6738188826 3997674.9800783703 4005287.9554771283 4158772.2835839395 3484069.045603504 3568122.360519041 3546800.069599412 3410778.6579726934 3711950.305392711 0.8603062232010286 1.1091532308063337 1.0769742726001905 1.0790252093780073 1.1203739116717395 0.9386087525314815 0.961252728878208 0.9555085003284205 0.9188643104993953 1.0 21.82374596549995 2.7196035614444054 24.54568661548746 0.9529640591825992 1.0557028496281353 0.30618845123709326 0.0706200861748061 738.6135995939785 956358.9701550399 0.022162817039992684 0.02093230416254659 524.3286169999303 -2.7196035614444054 0.10273879044553613 KQIT(ph)MEELVR ddPTM_BT-474_Trastuzumab_2h_R1 16 KQITMEELVR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR 219.35 3.7245e-09 16691780000.0 25616090.0 20404590.0 16039800.0 18834440.0 15655670.0 19031460.0 18421200.0 19113150.0 27097040.0 21253020.0 True False 25478175.817655165 21083744.443314858 18298064.419559132 21218878.17286137 17649326.776073884 17715859.965438 17530096.18018225 20539470.30760912 20419337.573733434 19896634.06797416 1.2805269338830085 1.059663879392117 0.9196562773907521 1.0664556678466288 0.8870508808563974 0.8903948228084287 0.8810583800402141 1.032308793408915 1.0262709513565724 1.0 24.24602105356505 4.680778544258436 2.4799127983718825 0.9616931849185149 1.3298653885615734 0.6913420571693154 0.06421347703192679 0.25556669782429464 2.152217490886219 0.01664757501132485 0.18814928426948258 47948.888498522 -4.680778544258436 0.3681722036430586 KQITTS(ph)PITVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQITTSPITVR 11 1 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 KQIT(0.003)T(0.019)S(0.979)PITVR;KQIT(0.011)T(0.141)S(0.847)PITVR 165.64 1.3081e-05 871270000.0 698390.0 721170.0 653570.0 719170.0 722860.0 818340.0 797280.0 737280.0 911150.0 828520.0 True False 694629.9458384236 745173.707493529 745586.9750677218 810216.8482618383 814911.9362731051 761770.0819651532 758712.5204946315 792299.5774319805 686609.2912844805 775643.1442683405 0.895553517067006 0.9607171970770744 0.9612500034033428 1.0445742404209746 1.0506273952073755 0.9821141172900152 0.9781721479796233 1.021474351042388 0.8852128667135385 1.0 19.56503352838541 4.625948162647142 1.6371214154964198 0.996561453346082 0.875257669444493 0.29908689645786257 0.044367127081386556 0.9427388558326266 2.9145810237819987 0.011734508044664582 0.16920483356008537 42261.81675860448 -4.625948162647142 -0.12130378390158902 KQKT(ph)DEDD ddPTM_BT-474_Trastuzumab_2h_R1 1 KQKTDEDD 8 2 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 1 KQKT(1)DEDD 67.77600000000001 0.093608 99359000.0 274480.0 146720.0 115790.0 160820.0 158210.0 870810.0 235740.0 188450.0 337360.0 159320.0 True False 273002.2301775949 151603.48650588715 132092.22553527774 181179.7955107539 178357.1057158618 810612.9543662468 224336.35558574664 202513.0959297101 254222.14839239683 149152.06119928564 1.8303617662569882 1.0164357454190733 0.885621187351787 1.2147320932338659 1.1958071801472097 5.434808931558562 1.5040781453633782 1.357762637011952 1.7044494480885821 1.0 17.18642438949807 KQLATK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQLATK 6 1 K7EK07;Q71DI3;Q16695;P84243;P68431;Q6NXT2;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q5TEC6 K7EK07;Q5TEC6 H3F3B;HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C 0 ; 89.369 0.080564 1044860000.0 1211880.0 1072380.0 1019620.0 891980.0 940980.0 781770.0 1073650.0 1072060.0 2114220.0 1299770.0 False True 1205355.3727325257 1108073.520032601 1163173.6333040863 1004904.5765432295 1060808.225374578 727728.0799886334 1021713.4477587037 1152062.561010376 1593198.8100965542 1216817.5658109165 0.9905801876958013 0.9106324162029614 0.9559145643405628 0.8258465400058035 0.871789046427539 0.5980584932661273 0.8396603373142542 0.9467833086734032 1.3093160839068 1.0 20.214681454196608 1.4347299646230915 4.9116375990787375 1.1544300143767943 0.8546185587992469 0.48236677007159434 0.12169369923534729 0.1618775282752039 7.215344263112762 0.08341020774930125 0.03137898613896764 27.210089146033734 -1.4347299646230915 -0.2998114555775474 KQLELR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQLELR 6 1 Q15233;Q15233-2;H7C367 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;; 119.57 0.033516000000000004 4583550000.0 7889000.0 8947000.0 7885000.0 7836600.0 7583800.0 9053300.0 8220600.0 8060900.0 11004200.0 9204500.0 False True 7846526.500550307 9244795.486424277 8995139.462351376 8828712.7564953 8549551.977295713 8427466.68017587 7822938.17225838 8662445.290420821 8292362.358725446 8617060.92963109 0.9105803666269573 1.0728478726005783 1.0438755784376788 1.0245619508313344 0.9921656638050177 0.9779978056319331 0.9078429682860897 1.00526680281831 0.9623191046741798 1.0 23.03876445426784 2.9733342114653656 2.8266253031981674 0.9688093191378627 1.0191915279238046 0.14980636156919203 0.04634716627852065 0.43726713276527357 7.0261914887873775 0.014375304001885183 0.0163933338039648 940.4467532830562 -2.9733342114653656 0.05038220878594191 KQLQDEMLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KQLQDEMLR 9 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;; 191.4 5.762800000000001e-05 5975100000.0 5781700.0 7451800.0 7294300.0 6586100.0 5463850.0 7369700.0 8198400.0 6140000.0 10880800.0 8145600.0 False True 5750571.969607258 7699828.658291771 8321274.036807826 7419899.584711945 6159638.9107238045 6860249.985407765 7801812.071070617 6598197.978288255 8199372.635250153 7625740.834200983 0.7541001057649761 1.0097154920028897 1.0912086074952114 0.9730070488934199 0.8077430173207827 0.899617510555822 1.0230890664523984 0.8652533729832175 1.075223091568555 1.0 22.862446070285067 1.2278323250552585 24.99914271087544 1.037611563257944 0.9339064971115706 0.16353918753007946 0.09845769159227002 462.2294030368351 1077054.5757916945 0.09085931924447849 0.023640100785825076 16.897884023303618 -1.2278323250552585 -0.10370506614637331 KQMVIDVLHPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQMVIDVLHPGK 12 1 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4 E7ETK0 RPS24 40S ribosomal protein S24 0 ; 118.37 0.00041110000000000007 4168100000.0 9532600.0 9129800.0 8663400.0 8357700.0 7544200.0 9974400.0 10065100.0 9178400.0 12652500.0 10030800.0 False True 9481277.540771415 9433679.873919347 9883131.416377285 9415783.963065723 8504909.152023287 9284893.205212045 9578212.66058413 9863338.81497083 9534460.90981385 9390625.756200068 1.0096534338525307 1.0045847975243667 1.0524465219851877 1.0026790767217024 0.9056807685481455 0.9887406277565461 1.0199759748981807 1.050338824168204 1.0153168870049811 1.0 23.162789866211444 2.134185848189085 5.07130803552938 1.0291175633585397 0.9935895272641441 0.11040209950666746 0.036307545009086784 0.41540542207527953 17.042776751586164 0.01519943445910921 0.011101891377347364 136.20274118927878 -2.134185848189085 -0.03552803609439559 KQNGAIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQNGAIGR 8 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 116.73 0.0035533 139760000.0 174670.0 211860.0 201130.0 205010.0 188420.0 168100.0 218010.0 187040.0 295920.0 238950.0 False True 173729.5961276612 218911.63202792575 229447.35574670054 230964.24497985118 212414.1701471631 156479.64266483628 207464.02342092418 200997.8745698752 222994.48112484624 223700.0064246126 0.7766186461251108 0.9785946613358701 1.025692217957199 1.032473126270055 0.94954923579203 0.6995066525291777 0.9274207307224196 0.898515282956024 0.9968461096133042 1.0 17.771205772267713 4.748176736179064 23.69599799244127 0.9373657230986487 0.7766184631028665 0.22904665389114642 0.09183758610443983 1059.5210993807505 2610752.058702161 0.02323908500296216 0.287335276524581 55998.54412587099 -4.748176736179064 -0.1607472599957822 KQNLER ddPTM_BT-474_Trastuzumab_2h_R1 4 KQNLER 6 1 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2;CON__Q3MHN2;P02748 F1T0B3 DDX1;C9 ATP-dependent RNA helicase DDX1;Complement component C9;Complement component C9a;Complement component C9b 0 ;;; 148.21 0.017309 1555450000.0 2137240.0 2474770.0 2075320.0 2170970.0 2146820.0 2002910.0 2390820.0 2419310.0 3172090.0 2600520.0 False True 2125733.3373096893 2557141.2234199415 2367507.016995188 2445814.5794054326 2420204.8018009416 1864453.5460429955 2275166.9027806683 2599851.197207258 2390370.9233283135 2434552.587182816 0.8731515386034514 1.0503536612363673 0.9724608248182426 1.0046258981144656 0.9941066028076735 0.7658300567663974 0.934531837496029 1.0678969149792406 0.9818522450132703 1.0 21.21522523298255 1.7559655167622847 24.99999999996001 1.0218365361670922 0.9450983218012915 0.16209991397276802 0.0770681363728951 12.593369979782302 18108.304676128602 0.03705141862365482 0.020546987187594942 57.0119002698872 -1.7559655167622847 -0.07673821436580075 KQNS(ph)NSQSTPGSSGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQNSNSQSTPGSSGQR 16 1 A8CG34-2;A8CG34;A6NF01;Q96HA1-2;Q96HA1-3;Q96HA1 A8CG34-2;Q96HA1-2 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 1 KQNS(0.928)NS(0.07)QS(0.001)T(0.001)PGSSGQR 55.453 0.082537 14841000.0 6962.2 7060.6 10104.0 6976.6 8424.7 9982.9 9156.6 7848.1 9595.2 6627.8 True False 6924.716288773134 7295.607802777165 11526.555374457626 7859.83684467309 9497.53560789092 9292.80562021889 8713.66027639115 8433.76507384431 7230.591529092747 6204.808129654937 1.1160242418581012 1.1757990981073074 1.8576811939386502 1.266733262404714 1.530673537268444 1.4976781595881006 1.4043400044467993 1.3592305994985423 1.1653207283776004 1.0 12.599170883466526 1.107731023133588 1.9248882616211749 1.0010655978582788 1.4182142495513708 0.3144908459269371 0.1963247716563836 0.3672196698073697 2.634248861375348 0.18217604592906192 0.052007699928228214 12.815366272010296 -1.107731023133588 0.417148651693092 KQNS(ph)PVAPTAQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQNSPVAPTAQPK 13 1 Q6P1N0-2;Q6P1N0 Q6P1N0-2 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 KQNS(1)PVAPTAQPK;KQNS(1)PVAPTAQPK 152.32 2.7663000000000006e-05 2221930000.0 2788300.0 2106860.0 1982660.0 1891350.0 1865540.0 2589300.0 2534700.0 2471100.0 3309300.0 2677300.0 True False 2773288.102609252 2176985.561476233 2261801.294410347 2130794.7160755172 2103105.461078119 2410307.7855565795 2412086.877505696 2655506.0299915457 2493767.357348116 2506432.4218481495 1.106468332612907 0.8685594482818751 0.902398674185111 0.850130527159535 0.8390832494607485 0.961648821865825 0.9623586323253485 1.0594764123077673 0.9949469754741305 1.0 21.25720390618576 2.191598530900444 2.29428204514565 1.0214801488737406 0.9078307486653021 0.2518779832516357 0.07351883691767012 0.36530814334782535 3.876554169162321 0.03415928841973438 0.02235155908372528 155.45279355086794 -2.191598530900444 -0.1136494002084385 KQPAS(ph)PDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQPASPDGR 9 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 KQPAS(1)PDGR;KQPAS(1)PDGR 74.46 0.02513 304510000.0 793190.0 780550.0 751490.0 663290.0 673930.0 682120.0 800230.0 759470.0 782590.0 794160.0 True False 788919.553171693 806530.1348975608 857293.2599318253 747262.4459913435 759750.990803937 634966.6499377639 761519.8177245365 816145.507910518 589731.180668739 743476.0288854165 1.0611230524195963 1.084809870879996 1.1530879633295483 1.0050928570106066 1.0218903653732039 0.8540512743762235 1.024269496443847 1.0977428675596228 0.7932080628784167 1.0 19.50392670216758 3.5720146342260346 4.716074035508315 0.9799484729667343 1.0978195223407725 0.32112353146818107 0.08569314739690712 0.3030775910217174 11.163884121183072 0.023611855584057772 0.03690496384188793 3732.627352504993 -3.5720146342260346 0.11787104937403825 KQPFCDGSHFFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQPFCDGSHFFQR 13 1 P0C7P0 P0C7P0 CISD3 CDGSH iron-sulfur domain-containing protein 3, mitochondrial 0 119.87 0.0002044 376560000.0 244700.0 299130.0 297440.0 305110.0 362530.0 530590.0 315150.0 225570.0 388880.0 351740.0 False True 243382.56238872607 309086.3612220964 339316.96660517354 343736.8947163666 408696.0466163416 493911.5621745123 299904.9905100879 242403.1788212513 293045.734725028 329291.6520602358 0.7391094212865295 0.9386401364513082 1.0304450917058288 1.0438676248418481 1.2411369801187087 1.499921297987121 0.9107579516022097 0.7361352081191224 0.8899276155091308 1.0 18.329006412777733 2.0161826692301927 24.99184668074024 0.8403884753083352 1.0893387723918186 0.19272741656671066 0.1952757494614578 343.5706345869532 530594.1830515334 0.07874206980839288 0.05813964079153952 103.79649039351752 -2.0161826692301927 0.24895029708348348 KQQEEEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 KQQEEEAER 9 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ; 157.75 0.00010873 541220000.0 498190.0 499770.0 462710.0 445910.0 423220.0 467940.0 516370.0 445800.0 590160.0 519880.0 False True 495507.8003941119 516404.5423326554 527855.5460525815 502362.1602798175 477114.5583785289 435592.4092122758 491391.2103750409 479067.8597265313 444722.97573884553 486700.8133083397 1.0180952791632027 1.0610307774552608 1.0845585863407405 1.032178592151963 0.9803035978825505 0.8949900992590182 1.009637126009341 0.98431694919529 0.9137502210358955 1.0 18.892675659891378 3.271929827522773 3.4514190127684885 0.9635406768591729 1.055245530781256 0.5700672823858527 0.03673400712050403 0.17093797350753093 4.225427762782156 0.010773789169613314 0.014380089948105442 1870.3799035179395 -3.271929827522773 0.09170485392208316 KQQEYEEQFK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQQEYEEQFK 10 1 H3BQQ6;H3BTI2;H3BTP8;H3BSY6;H3BP64;H3BUL4;H3BMX9;Q9GZU8;Q6P4H7;H3BSF0 H3BQQ6 FAM192A;NIP30 Protein FAM192A 0 133.05 0.0003326 308930000.0 201350.0 181940.0 183490.0 148940.0 146000.0 221430.0 195980.0 207770.0 297750.0 220580.0 False True 200265.95397208806 187995.76291494738 209323.79707632898 167795.78872883777 164592.23459020196 206123.06529015326 186499.69868369677 223274.85243468249 224373.50214558985 206502.39555196097 0.9697996647292952 0.9103805426201127 1.013662802878517 0.8125609791612142 0.7970475797642095 0.9981630708893531 0.9031357635595513 1.0812216092597393 1.0865418851237107 1.0 17.655798992308593 1.7414765204742557 7.0945798189908045 1.0614906508327326 0.913215907578302 0.4575954912475295 0.0701211745867174 0.11534672857132272 17.591139545415185 0.0351744653834978 0.018614238344730968 55.14123902336826 -1.7414765204742557 -0.14827474325443069 KQQLAEEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQQLAEEEAR 10 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 144.1 5.2588e-05 233420000.0 395720.0 378370.0 376530.0 363270.0 404460.0 467350.0 379510.0 382450.0 506880.0 429920.0 False True 393589.48748862516 390963.81672050536 429542.1511425699 409259.9447530873 455965.5835777602 435043.19452356466 361151.6514310116 410990.36104175 381966.2158440185 402482.1375269702 0.9779054790034026 0.9713817838544624 1.06723283120555 1.0168400199516008 1.132884024069779 1.0809006262903098 0.8973110052786155 1.0211393816556882 0.9490265038617349 1.0 18.618565231147052 -0.673024256231026 5.584268818825466 0.9999999999349529 1.0142199781372991 0.002961988086619294 0.06516465356976506 0.0 1.7180104792021215e-10 0.06438312174123369 0.015175246647342044 0.21231258777857648 0.673024256231026 0.014219978202346217 KQQLEVELR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQQLEVELR 9 1 P15924 P15924 DSP Desmoplakin 0 ; 180.07 7.869e-05 585860000.0 1058060.0 1118130.0 1219920.0 1038150.0 883220.0 1273080.0 1389660.0 1036770.0 1554200.0 1334750.0 False True 1052363.5225215175 1155346.281126142 1391674.132265274 1169579.6835560813 995692.8317449193 1185074.9761079722 1322436.8367832748 1114139.0420113853 1171188.2352130166 1249565.1122630332 0.8421838223505036 0.9245987022106791 1.1137267827083241 0.9359893870899663 0.7968314911910939 0.9483899354085953 1.0583176689274454 0.8916214377925584 0.9372766762765394 1.0 20.25299464857312 2.481605275679023 24.994153624913892 0.9641604544664962 0.9279763448312094 0.06234040223616921 0.08675994039084615 869.0003314185303 4843892.4117644355 0.03150787487253606 0.026988285532233817 303.113497467835 -2.481605275679023 -0.03618410963528684 KQQMAEEMVEAAGEDER ddPTM_BT-474_Trastuzumab_2h_R1 3 KQQMAEEMVEAAGEDER 17 1 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;; 238.94 4.6282e-20 1472960000.0 1860280.0 1788330.0 1785210.0 1654650.0 1826560.0 2074230.0 1910040.0 1972990.0 2235080.0 2079470.0 False True 1850264.4591765383 1847853.4829816879 2036552.0506765153 1864128.520344915 2059161.589130678 1930843.3623122189 1817644.068138625 2120224.532440216 1684274.4825375816 1946756.444276163 0.9504344853290048 0.9491960272764122 1.0461257527434256 0.9575561061199054 1.0577397060556843 0.9918258485745706 0.9336782079149382 1.0891062098055884 0.8651695940135046 1.0 20.892640971300132 4.309457186391937 24.99456043564373 0.9984671186635592 0.9498142393054523 0.066044846018667 0.06138957639565346 108.04130628159643 38086.108605410474 0.01383296267382975 0.03788312240909994 20391.876225547996 -4.309457186391937 -0.048652879358106915 KQQMAR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQQMAR 6 1 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2 P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;; 160.1 0.014291 1561450000.0 3051840.0 3425110.0 3626880.0 2560680.0 1796450.0 1638380.0 2836350.0 2052060.0 4775860.0 2963500.0 False True 3035409.232531299 3539112.7158272844 4137513.17859391 2884861.8254475677 2025217.2591066298 1525122.6469316771 2699144.914590791 2205195.1373495413 3598913.296245294 2774366.892820004 1.094090778111167 1.275646968317862 1.491335983464082 1.039827080157827 0.7299745626102461 0.5497191632724059 0.9728867950292062 0.7948462559355557 1.2972016446560104 1.0 21.403727157076222 3.499813202992748 6.49584439637239 0.8659258930912144 1.2844741049778081 0.4260192956339067 0.20450300382987255 0.15500555560272009 25.305355862904026 0.055641297037235304 0.08294432328977693 3160.917806405053 -3.499813202992748 0.41854821188659375 KQQMGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQQMGK 6 1 P31946-2;P31946;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ; 121.87 0.03121 3513400000.0 3870700.0 3015000.0 2928300.0 2760700.0 2603800.0 2595200.0 3030000.0 3024900.0 4626500.0 3682800.0 False True 3849860.581275195 3115352.4523940096 3340579.1867601224 3110204.3369390494 2935378.496068275 2415799.932443683 2883427.3242759514 3250633.3981309645 3486361.0669238376 3447760.5509962924 1.1166264374603128 0.9035872434626507 0.9689127586876073 0.9020940668400826 0.851386995312086 0.7006866911756949 0.836318903713523 0.9428245813624254 1.0111958227250992 1.0 21.71722815120889 KQQNVDR ddPTM_BT-474_Trastuzumab_2h_R1 8 KQQNVDR 7 1 Q13268;C9JZP6;Q13268-2 Q13268 DHRS2 Dehydrogenase/reductase SDR family member 2, mitochondrial 0 ;;;;;;; 186.13 0.00096744 3719762000.0 4008190.0 4164580.0 4335920.0 3365320.0 4450710.0 4170590.0 3649520.0 3344740.0 5401900.0 5017410.0 False True 3986610.3503917693 4303195.527758227 4946379.847507751 3791369.166945964 5017481.537075057 3882286.929812846 3472978.775079729 3594341.4830455817 4070674.126751513 4697194.5981791895 0.8487215649820279 0.9161203432845444 1.0530498032645177 0.8071560774628418 1.068186857538332 0.8265118356641573 0.739372981572019 0.7652102564451736 0.8666181572144064 1.0 22.163367932988546 2.510976640782474 24.55252428913334 0.8101375512252397 0.9375364699551064 0.1672672327621212 0.10100620424703956 638.7719851209449 463247.92391910474 0.03085828658822281 0.029075515578003242 324.3221726977566 -2.510976640782474 0.12739891872986675 KQQTLEAEEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQQTLEAEEAK 11 1 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ; 133.71 0.00025011 452540000.0 675890.0 564400.0 495610.0 456690.0 481540.0 724540.0 687020.0 634790.0 1019140.0 719020.0 False True 672251.083338438 583185.7128129957 565387.5800806556 514506.9071745195 542861.2646888067 674454.2551837038 653786.2179287339 682161.2531983055 767986.6027763438 673131.5280160079 0.9986920168779422 0.8663770578862662 0.8399362628981034 0.7643482525487707 0.8064713092385369 1.0019650352310707 0.9712607279824013 1.0134145034164599 1.1409161074952356 1.0 19.360528905388964 2.659329398966429 5.329477860725763 1.0228856415359704 0.8501427727470954 0.5961681353613832 0.07011424593442271 0.16675871571992648 8.28542664645962 0.02415036603274129 0.022792650035985056 456.3829370897821 -2.659329398966429 -0.17274286878887501 KQS(ph)AGPNS(ph)PTGGGGGGGSGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQSAGPNSPTGGGGGGGSGGTR 22 1 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 2 KQS(1)AGPNS(0.995)PT(0.005)GGGGGGGSGGTR 98.94 0.0037918 378800000.0 275010.0 234830.0 207750.0 230270.0 228750.0 265340.0 240000.0 252180.0 311130.0 266910.0 True False 273529.3767164831 242646.17459226743 236999.39420462897 259422.15838988515 257879.9565925255 246997.67034317454 228390.28311096632 270998.9521440932 234456.18042840468 249875.5752868521 1.094662319046097 0.9710679977973619 0.9484696290646193 1.0382053471695813 1.0320334682430827 0.9884826480524406 0.9140160371768185 1.084535580690477 0.9382917084202956 1.0 17.930850362917603 2.6942704431291356 24.648453040897518 0.9921300460122464 1.011725536875462 0.06431913472384398 0.05591139041316785 1874.68536004397 1043302.5756492721 0.018226329684356165 0.017184171822147844 494.6185991675598 -2.6942704431291356 0.01959549086321566 KQS(ph)ESIEEHVEQVNQNCIAEDCHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQSESIEEHVEQVNQNCIAEDCHIK 25 1 H0YLM8 H0YLM8 DMXL2 1 KQS(0.5)ES(0.5)IEEHVEQVNQNCIAEDCHIK 96.634 0.0042396000000000005 76242000.0 87886.0 73894.0 78539.0 67010.0 66648.0 86505.0 90508.0 74551.0 113280.0 91730.0 True False 87412.83154105255 76353.51712013375 89596.60852677429 75493.45912930988 75135.22774635456 80525.11296086662 86129.782265864 80114.3741823075 85363.66187423143 85875.71286599591 1.0178993410797674 0.8891165449686456 1.0433288474307587 0.8791013967722522 0.8749298869122489 0.93769367698317 1.0029585710719462 0.9329107323664532 0.9940373014129908 1.0 16.389962549538044 2.328973825630234 12.148073411450303 0.9730935953153916 0.9368881746039537 0.11006397007572755 0.05569752608800744 1.3716730397712609 176.3823028586278 0.019007098558484526 0.01589844960069327 213.29163611473913 -2.328973825630234 -0.03620542071143795 KQS(ph)FDDNDS(ph)EELEDKDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 KQS(1)FDDNDS(1)EELEDKDSK;KQS(1)FDDNDS(1)EELEDKDSK 174.4 3.1762e-12 809160000.0 1315670.0 566570.0 420210.0 507920.0 612510.0 1010130.0 687430.0 790800.0 1783520.0 881530.0 True False 1308586.5789046783 585427.9399512025 479371.9154692041 572222.6199217895 690509.5178687983 940302.0906902503 654176.3846623817 849813.5116010343 1343995.3939435852 825270.0006841968 1.585646609981926 0.7093774636977579 0.580866764903337 0.6933762519507357 0.8367074015732133 1.1393872186201912 0.7926816485756558 1.0297399770941504 1.6285523438745317 1.0 19.654506672487166 1.4432155418724704 6.320005222281832 1.3243724072340382 0.8872869558115586 0.21784153283461594 0.30407958127543633 0.2369972248419471 20.4846514171521 0.18622806983314974 0.07459121826751666 27.74696854747927 -1.4432155418724704 -0.43708545142247957 KQS(ph)LGELIGTLNAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 KQS(0.998)LGELIGT(0.002)LNAAK;KQS(1)LGELIGTLNAAK;KQS(1)LGELIGTLNAAK 216.17 2.3745e-12 20549490000.0 5436010.0 3879620.0 3558630.0 3235320.0 3122990.0 5083890.0 4529440.0 4325840.0 6732420.0 4938020.0 True False 5406743.126157487 4008750.8064201837 4059654.1718335394 3644911.1802751664 3520684.265088046 4732452.650489795 4310333.683058901 4648656.146970431 5073305.300806084 4622871.335948383 1.1695638345185075 0.8671560411485663 0.8781672421347414 0.788451790109666 0.7615795485611924 1.0237041670810272 0.9323931751119425 1.0055776614031067 1.097435972607551 1.0 22.140357779275853 1.970995400335214 1.4153055488464616 1.0420394683604501 0.8935454870029027 0.19182986228490895 0.111865488271875 0.6603405111362617 2.4592396885262877 0.07997343357196028 0.036992294283636 93.53957672066741 -1.970995400335214 -0.14849398135754743 KQS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQSPPR 6 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 KQS(1)PPR;KQS(1)PPR;KQS(1)PPR;KQS(1)PPR 73.665 0.050449 1637357000.0 502516.0 455488.0 412231.0 404987.0 413002.0 331398.0 481474.0 433185.0 567004.0 517585.0 True False 499810.50969077623 470648.6427316899 470269.54162391555 456258.3126757477 465595.35664536036 308489.2362869808 458183.26321070554 465511.46436885966 427273.4616643431 484552.2821731878 1.0314893316551026 0.9713062141011061 0.9705238400999474 0.9416080151959177 0.9608774404223074 0.6366479895697222 0.9455806526300551 0.9607043068315946 0.8817902162137125 1.0 18.886292812239436 2.9698275784443666 24.988238202508068 0.8845913508879406 0.9743187183475212 0.18794546943203427 0.09416885656503407 1246.0213315321384 1031932.1963073576 0.0295071445710478 0.031338088217343345 932.8838580978955 -2.9698275784443666 0.08972736745958054 KQS(ph)SEGIPVAQPSVMDDIEVWLR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQSSEGIPVAQPSVMDDIEVWLR 23 1 Q6ZVM7-2;Q6ZVM7;Q6ZVM7-4;Q6ZVM7-3 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 1 KQS(0.772)S(0.228)EGIPVAQPSVMDDIEVWLR;KQS(0.776)S(0.224)EGIPVAQPSVMDDIEVWLR;KQS(0.756)S(0.244)EGIPVAQPSVMDDIEVWLR;KQS(0.968)S(0.032)EGIPVAQPSVMDDIEVWLR 177.78 3.2799e-17 990700000.0 517798.0 475279.0 468479.0 426968.0 426920.0 534162.0 511969.0 425396.0 568135.0 492153.0 True False 515010.23310076655 491098.3742027774 534436.7711075352 481022.1050219843 481285.7314469105 497236.63822209655 487203.1035584929 457141.209637119 428125.74186896667 460743.3741866176 1.1177810945408602 1.0658826620561774 1.1599445614405497 1.0440130709880877 1.044585247257343 1.0792051846646802 1.0574283448320587 0.9921818418857185 0.9292065081234578 1.0 18.81360389347383 1.7390612158380414 2.236701209381398 0.9624039858229394 1.0838864706579692 0.6581677014466825 0.036198267101011476 0.16760538310521397 1.7264939819495324 0.02384984370571353 0.010230756974298377 54.83542525697731 -1.7390612158380414 0.12148248483502977 KQS(ph)SSEISLAVER ddPTM_BT-474_Trastuzumab_2h_R1 2 KQSSSEISLAVER 13 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 KQS(0.985)S(0.014)S(0.001)EISLAVER;KQS(0.925)S(0.038)S(0.038)EISLAVER 231.83 1.0852e-12 706670000.0 714300.0 600970.0 512260.0 489130.0 435470.0 634200.0 634190.0 603140.0 949380.0 778370.0 True False 710454.2881661908 620972.9231559633 584381.7553562614 551053.8078483709 490924.5232670904 590359.246746218 603511.8068589326 648149.3694828629 715418.0200402352 728693.7602039154 0.9749696332892702 0.852172691834485 0.8019579517090002 0.7562213894821409 0.6737048539151914 0.8101609743179544 0.8282104771832377 0.8894674345797702 0.9817814548597683 1.0 19.474953111403998 1.4430833181322515 1.789001935995214 1.0015402621488365 0.8052040045793013 0.4945867677232352 0.07138305588923803 0.2945539624066442 1.7618608048420876 0.06737456697971637 0.021454283964243013 27.73852209081322 -1.4430833181322515 -0.1963362575695352 KQSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_BT-474_Trastuzumab_2h_R1 5 KQSAGPNSPTGGGGGGGSGGTR 22 1 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 KQSAGPNS(0.951)PT(0.049)GGGGGGGSGGTR;KQSAGPNS(0.989)PT(0.011)GGGGGGGSGGTR;KQSAGPNS(0.979)PT(0.021)GGGGGGGSGGTR;KQSAGPNS(0.939)PT(0.061)GGGGGGGSGGTR;KQSAGPNS(0.992)PT(0.008)GGGGGGGSGGTR 158.8 1.2465999999999998e-11 1455218000.0 918980.0 1012053.0 988644.0 1007289.0 1041529.0 1070231.0 1055167.0 921395.0 1175807.0 1032528.0 True False 914032.3137882769 1045738.5723060431 1127836.481752303 1134811.6841203314 1174161.5445239604 996248.4500227865 1004124.5410806204 990154.1736490085 886045.119856591 966631.1790483055 0.9455853831325669 1.081838238795093 1.1667702286023007 1.1739862200985567 1.2146944666940895 1.0306396810039178 1.0387876605317334 1.0243350257166983 0.9166320506327394 1.0 19.882606004618246 2.5345254492649913 9.487990752422984 1.0054876368298908 1.120950412949986 0.37519124795508096 0.07441330221091161 0.5964471397461393 95.87984213995591 0.025561903291476656 0.024034191609122606 342.39345098605554 -2.5345254492649913 0.11546277612009526 KQSEPFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KQSEPFFK 8 1 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 111.46 0.0051792 1067600000.0 1883620.0 1710220.0 1622200.0 1530550.0 1703450.0 2085000.0 1997600.0 1930690.0 2845200.0 2264600.0 False True 1873478.7992098543 1767143.6388501776 1850591.659584835 1724317.4730691728 1920374.260360817 1940868.85756207 1900968.456426945 2074767.8916451726 2144038.5837267274 2120071.289178398 0.8836866990146794 0.833530291113469 0.8728912414553778 0.8133299487949796 0.9058064557371698 0.9154733934981143 0.8966530824365048 0.978631191429991 1.0113049474659965 1.0 21.015681346761205 1.9591489326911087 0.8533264846739872 1.0140353506732276 0.8543654441135726 0.8228185824611726 0.026803640431249862 0.2260310504219548 0.30526924499721464 0.022302533924468914 0.010839037038284394 91.02253628772539 -1.9591489326911087 -0.15966990655965496 KQSFDDNDS(ph)EELEDKDSK ddPTM_BT-474_Trastuzumab_2h_R1 6 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 KQS(0.044)FDDNDS(0.956)EELEDKDSK;KQS(0.001)FDDNDS(0.999)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK;KQS(0.015)FDDNDS(0.985)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK 233.28 5.0762999999999995e-24 8880580000.0 8568950.0 4332167.0 3735366.0 2952977.0 3237737.0 6469060.0 6835872.0 6635450.0 13034210.0 6040920.0 True False 8522815.72529984 4476360.559744752 4261273.064416694 3326823.5854244432 3650043.6153792934 6021869.108729252 6505194.755793029 7130620.973132379 9822103.594965814 5655383.313708182 1.5070270665193002 0.7915220439425252 0.7534896978756012 0.5882578422863924 0.6454104722719483 1.0648029982570302 1.150265931581503 1.2608554677184025 1.7367706219236891 1.0 22.431193380638216 2.162929600853139 1.791718672135088 1.355196489195004 0.8388243619573187 0.32468661256068254 0.2927856512322996 0.39421694243940325 2.4767145409345503 0.16004078640767438 0.09363624579941202 145.52231697480772 -2.162929600853139 -0.5163721272376852 KQSGHS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQSGHSPAR 9 1 F8W133;P35638;P35638-2 F8W133 DDIT3 DNA damage-inducible transcript 3 protein 1 KQS(0.002)GHS(0.998)PAR;KQS(0.087)GHS(0.913)PAR 62.732 0.049423 51559000.0 122557.0 216903.0 187443.0 249665.0 214172.0 108214.0 150189.0 131938.0 180118.0 166648.0 True False 121897.16672936277 224122.4852343677 213833.3451162373 281272.5634012706 241445.53470310094 100733.42088835567 142923.78429230404 141783.88352758883 135730.3323575463 156012.38196546928 0.7813300790211809 1.4365685749479387 1.3706177831677855 1.8028861546612727 1.547604950718212 0.6456758086717201 0.9161053917113953 0.9087989154538407 0.8699971800160574 1.0 17.251301007955703 2.7443715564552367 24.980034553441897 0.8704381779004899 1.412616408341104 0.5113456309733387 0.25342733414943647 388.3382397975251 1669387.2376576925 0.0801678432000044 0.08296726351519469 555.1004206741344 -2.7443715564552367 0.542178230440614 KQSQIQNQQGEDS(ph)GS(ph)DPEDTY ddPTM_BT-474_Trastuzumab_2h_R1 1 KQSQIQNQQGEDSGSDPEDTY 21 1 P18858;P18858-3;F5GZ28 P18858 LIG1 DNA ligase 1;DNA ligase 2 KQSQIQNQQGEDS(0.984)GS(0.984)DPEDT(0.016)Y(0.016) 55.127 0.076649 0.0 52560.0 97676.0 96388.0 109340.0 101930.0 69908.0 65931.0 55809.0 66442.0 71413.0 True False 52277.02279996496 100927.08661361117 109958.59258048513 123182.43278911716 114910.1813135567 65075.424505730945 62741.665649121394 59973.750972359776 50068.259377186536 66855.36120025477 0.7819421189480573 1.5096334056336915 1.6447236333242052 1.84252138613302 1.7187878316798146 0.9733763057656317 0.9384687259588435 0.8970671894617066 0.748904178787022 1.0 16.028755635707878 2.6598829051544706 5.9154942902862455 0.9007338278964518 1.5262058595496537 0.5372854771256808 0.27252616156213294 0.1822715173123718 10.773846003161697 0.09273211962869525 0.08745079896478272 456.9649657232053 -2.6598829051544706 0.6254720316532019 KQSS(ph)EGIPVAQPSVMDDIEVWLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQSSEGIPVAQPSVMDDIEVWLR 23 1 Q6ZVM7-2;Q6ZVM7;Q6ZVM7-4;Q6ZVM7-3 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 1 KQS(0.449)S(0.551)EGIPVAQPSVMDDIEVWLR 60.093 0.038266 15931000.0 18334.0 16592.0 14478.0 13033.0 16028.0 20137.0 18146.0 17415.0 16700.0 16750.0 True False 18235.291781098884 17144.254689924197 16516.376554968065 14682.976463696406 18069.070794601077 18744.97658739924 17268.208655548326 18714.595731578174 12584.50876853519 15681.00065960352 1.1628908241854474 1.0933138172801833 1.0532731241773743 0.9363545594077957 1.1522906724409216 1.195394158466491 1.1012185402194183 1.1934567275282135 0.8025322517174983 1.0 13.936730005366382 1.241191276423516 24.99998789051246 0.9012661132214839 1.1105380184235822 0.4941587280412558 0.08488797721562147 54.23723491181188 515476.16839146666 0.06454300175275561 0.021130423974091525 17.42574186774991 -1.241191276423516 0.20927190520209837 KQTDFEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQTDFEHR 8 1 Q01813;Q01813-2;B1APP6 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 ; 168.8 0.00019783 203220000.0 686440.0 730610.0 721530.0 673730.0 590600.0 861240.0 895000.0 637550.0 999680.0 876200.0 False True 682744.2833106533 754927.9121869282 823115.1523488122 759024.1489209073 665809.4092395434 801704.5059408906 851705.4307679787 685127.2184133021 753322.2590257048 820280.165847439 0.8323306008567255 0.9203293504079856 1.0034561197739609 0.9253230548818068 0.8116853691710192 0.977354493403656 1.0383104044556215 0.8352356267269865 0.9183719055884286 1.0 19.645757219344198 KQTIDNSQGAYQEAFDISK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQTIDNSQGAYQEAFDISK 19 1 P27348 P27348 YWHAQ 14-3-3 protein theta 0 165.06 3.6177000000000005e-11 817990000.0 404870.0 321230.0 305180.0 276170.0 313030.0 458620.0 393190.0 374230.0 516540.0 443460.0 False True 402690.224905286 331921.94636236434 348146.69132788724 311133.0936836516 352892.5150258285 426916.6788753557 374169.89756833744 402156.9429014353 389245.63828138745 415158.00313479325 0.969968594763042 0.7995075220905621 0.8385884138065168 0.7494329660860063 0.8500197812909597 1.028323374839879 0.9012710696723633 0.9686840669451414 0.9375843301640686 1.0 18.66330098428482 2.8626568750416026 6.694422959192035 0.9597200661737809 0.832251432555483 0.5112052821271074 0.061087501817795556 0.1983137494826436 10.015437694208766 0.01804636506457162 0.01918604268746137 728.8814121495953 -2.8626568750416026 -0.12746863361829797 KQTIDNSQGAYQEAFDISKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQTIDNSQGAYQEAFDISKK 20 2 P27348 P27348 YWHAQ 14-3-3 protein theta 0 168.78 6.6067e-12 2542600000.0 834380.0 715680.0 659940.0 624820.0 613670.0 906460.0 934750.0 819560.0 1304600.0 951070.0 False True 829887.7907883333 739500.976162304 752853.8156986893 703922.1479357615 691817.2369929397 843798.5537773211 889532.5714082323 880719.728841355 983098.8107443728 890371.8983480074 0.9320687145765764 0.8305529156236527 0.845549839449708 0.7905934017479842 0.7769980592115888 0.9476922568455965 0.9990573299299627 0.9891593956137193 1.1041440240515346 1.0 19.764048533925138 2.496696075976203 3.242985736093242 1.0171443344223916 0.833378230517089 0.762242456931546 0.04947890186436549 0.1234371570743152 2.682734047007951 0.018148348756376106 0.015866785310776742 313.83117004068487 -2.496696075976203 -0.18376610390530257 KQVDSEHMHQNVPTEEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KQVDSEHMHQNVPTEEQR 18 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 0 137.14 1.9484e-06 73764000.0 193180.0 238930.0 250750.0 260710.0 247240.0 304170.0 276410.0 44276.0 309030.0 202800.0 False True 192139.9403443158 246882.6406137649 286053.42044192855 293715.85926880117 278724.5484937091 283143.44383916265 263038.99231125927 47580.0999489724 232873.69728984634 189857.13037418496 1.012023830580562 1.3003601188282459 1.5066772571467428 1.5470362302955043 1.4680752202689331 1.4913500656052363 1.385457537427443 0.25061002373309815 1.226573354558141 1.0 17.53455465702459 1.7759525975064567 24.999999999986894 0.7500400132350947 1.4017863945683164 0.4631482331615431 0.27312607861190147 32.94293703438562 22034.560213218265 0.12154514789230647 0.06747330309209248 59.69701247684046 -1.7759525975064567 0.6517463813332217 KQVEEIFNLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQVEEIFNLK 10 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 137.01 0.0073498 0.0 1637000.0 1524300.0 1399200.0 1331100.0 1284200.0 1957000.0 1881400.0 1635600.0 2294500.0 1832200.0 False True 1628186.5738877992 1575035.4040411927 1596195.1979355812 1499617.1235192427 1447735.257950256 1821717.1962824794 1790389.4943540494 1757656.7774085118 1729051.219724791 1715267.4273746635 0.9492319086242151 0.9182448048068483 0.9305809534194148 0.8742759872811853 0.8440288871841495 1.062060158788618 1.0437961251875256 1.0247129685769922 1.0080359436261344 1.0 20.71000209386766 2.7306894251120357 24.9990754733648 1.0301829028072043 0.90401051983984 0.7934852109121752 0.031730768756533786 271.0551828787792 860875.2198889606 0.010757743511341145 0.010312388053063433 537.884989884153 -2.7306894251120357 -0.12617238296736422 KQVEELFER ddPTM_BT-474_Trastuzumab_2h_R1 4 KQVEELFER 9 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 ;;; 175.15 8.6795e-05 1545300000.0 1326190.0 1375090.0 1314000.0 1251740.0 1148640.0 1418210.0 1468860.0 1279250.0 1852420.0 1502390.0 False True 1319049.940393562 1420859.0393905418 1498999.778507256 1410210.1556562064 1294912.4954773255 1320172.4808072438 1397805.630209893 1374714.1308998785 1395915.9121562848 1406506.1839392076 0.937820221095149 1.0102046159591962 1.0657612427333958 1.0026334556927614 0.9206589421815827 0.9386183266609119 0.9938140664942212 0.9773964356485878 0.9924705117518484 1.0 20.42368446504029 4.757491951650204 23.068749788905496 0.9872516734532011 0.9378200929683668 0.14237744537651564 0.03749257410727185 3359.015531293986 4092929.4240790037 0.009851615451355187 0.31180084292360766 57212.635190265595 -4.757491951650204 -0.049431580484834314 KQVENER ddPTM_BT-474_Trastuzumab_2h_R1 4 KQVENER 7 1 Q9H307 Q9H307 PNN Pinin 0 ;;; 135.83 0.004873 2042950000.0 1275250.0 1254190.0 1162150.0 1078630.0 1120990.0 897440.0 1303140.0 1190530.0 1504050.0 1280540.0 False True 1268384.1956935942 1295934.9559761363 1325770.6184111165 1215184.447405575 1263741.431871714 835402.0851465245 1240102.139721769 1279373.3939888445 1133397.0307374469 1198814.8408745504 1.0580317764236986 1.081013440766829 1.1059010726326597 1.0136548247259625 1.0541589816737662 0.6968566426297227 1.0344400965349236 1.067198495019903 0.9454312643565703 1.0 20.193177418418085 2.9614955822590456 24.99619988980202 0.960122596214427 1.064408502252407 0.2554000417920296 0.0962898227448051 901.1221413734183 584987.8683271983 0.031120128330659882 0.03301397722062281 915.15695005201 -2.9614955822590456 0.10428590603798005 KQVENERR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQVENERR 8 2 Q9H307 Q9H307 PNN Pinin 0 ;;; 102.62 0.0027726999999999995 146048000.0 158668.0 221763.0 215720.0 218353.0 194779.0 153198.0 234316.0 191630.0 323899.0 239562.0 False True 157813.7491176722 229144.2473964356 246091.50092814697 245996.4674117625 219582.95110441762 142607.78284930182 222981.23990595498 205930.40367742287 244078.4314742383 224272.94806065303 0.7036682332056945 1.0217204053271067 1.097285709472162 1.096861969037989 0.9790879952451197 0.635867072165719 0.9942404638371779 0.9182132997232036 1.0883097296613278 1.0 17.774896086602325 1.2465195866560823 24.863862371262314 1.0441548703518893 0.9387605949895504 0.08596016347760005 0.14596140474483027 420.3293304066691 1313142.6697420417 0.1040805232634096 0.03649516916290178 17.640853228286634 -1.2465195866560823 -0.10539427536233881 KQVEVFR ddPTM_BT-474_Trastuzumab_2h_R1 3 KQVEVFR 7 1 A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 ;; 122.18 0.0070011000000000006 2746680000.0 2517950.0 2823550.0 2561900.0 2544080.0 2500060.0 2784120.0 2833870.0 2466150.0 3430860.0 2938900.0 False True 2504393.636970546 2917530.154877981 2922593.251566011 2866160.267149599 2818427.821983425 2591660.337513528 2696784.881665309 2650186.635855957 2585370.524168659 2751336.88588112 0.9102460879371775 1.0604045509111246 1.0622447823687886 1.0417336684059708 1.0243848495786145 0.941964014226322 0.9801725464824927 0.9632359633804825 0.9396779207358644 1.0 21.39170136976833 2.7538359307259266 22.724980089749252 0.964083340239676 1.025634731086397 0.2809957806159673 0.043311650081584774 286.71655045032503 426544.85854839924 0.012983551900423917 0.013707013820282615 567.3302369361259 -2.7538359307259266 0.0615513908467209 KQVNYNDGSQEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQVNYNDGSQEDR 13 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 167.32 5.1483e-05 284190000.0 155949.0 164597.0 140803.0 134434.0 161306.0 174179.0 168576.0 163720.0 188875.0 169172.0 False True 155109.3879115626 170075.51164401224 160626.83851838426 151453.3306161714 181847.36296443208 162138.41570326325 160421.33485714303 175937.61775331458 142329.28704533444 158375.29812456417 0.9793786641498039 1.073876505098956 1.0142164871699197 0.9562938943739285 1.148205339581472 1.0237607608210426 1.0129189132194696 1.1108905229333013 0.8986836251028911 1.0 17.272987809524604 4.776298175495573 21.38964980798628 1.0339887942252906 0.9793777930082913 0.030976196995029404 0.06854855752940048 8812.94322030068 4994522.8696380155 0.015428010850418516 2.694853923080382 59744.5336506865 -4.776298175495573 -0.054611001216999244 KQVVES(ph)FVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 KQVVESFVPR 10 1 A2A341;Q9BX26 A2A341 SYCP2 Synaptonemal complex protein 2 1 KQVVES(1)FVPR;KQVVES(1)FVPR;KQVVES(1)FVPR;KQVVES(1)FVPR 55.06399999999999 0.062558 8461790000.0 12687030.0 10682660.0 6789060.0 6398650.0 6612290.0 7837430.0 7582470.0 6311300.0 12538220.0 6689500.0 True False 12618724.440141538 11038225.880295675 7744900.636432629 7208718.433931632 7454325.937386614 7295646.911425745 7215676.958251717 6782281.254132035 9448343.684540316 6262570.382830905 2.014943332970164 1.7625711497881809 1.2366967815109262 1.1510798271736205 1.190298149434449 1.1649604659816777 1.1521909562938875 1.0829868312100634 1.5087005984704525 1.0 22.578323481666434 4.3265934548512535 2.6597135466889754 1.1729093468226017 1.9935172068417286 0.8418010360902142 0.12432719618040088 0.0934481131051398 1.2655864119488633 0.030081160765722554 0.11384799325569066 21212.578126706685 -4.3265934548512535 0.8206078600191269 KQVVNIPSFIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KQVVNIPSFIVR 12 1 P46781 P46781 RPS9 40S ribosomal protein S9 0 ; 88.101 0.011104 0.0 1633130.0 1945090.0 1958040.0 2363700.0 1670260.0 1909130.0 2258000.0 1748990.0 2947700.0 2163200.0 False True 1624337.409537799 2009831.144818266 2233715.0124112223 2662944.177644376 1882957.7105933614 1777156.3367086202 2148771.913602343 1879508.514991267 2221278.8321563606 2025142.7239913037 0.8020853988682993 0.9924392592227472 1.1029914020128164 1.314941483430879 0.9297901270298059 0.8775462171900984 1.0610471489966797 0.92808694060189 1.0968505112461886 1.0 20.94959215630343 KQYDTYGEEGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KQYDTYGEEGLK 12 1 Q9UBS4 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 0 85.42 0.018734 272870000.0 125490.0 91958.0 85349.0 74431.0 81495.0 128590.0 101920.0 114290.0 172510.0 116010.0 False True 124814.37578324958 95018.76644021513 97365.39733319302 83853.95696841764 91872.9051912912 119700.8759683006 96989.74022779048 122818.90015286053 129997.22201556929 108606.1424788422 1.1492386428103267 0.874893116277709 0.8964999134571139 0.7720922137047028 0.8459273397836513 1.1021556721952426 0.8930410197257974 1.1308651366269376 1.196960126273653 1.0 16.72874617493785 1.707964517261565 6.263759045904657 1.122487412490107 0.9267149401961745 0.3184602768246536 0.11680879001897587 0.14925761679651892 13.906652491323998 0.05945814855484245 0.03040575475018717 51.04632923871709 -1.707964517261565 -0.19577247229393246 KRDS(ph)DAGSSTPTTSTR ddPTM_BT-474_Trastuzumab_2h_R1 4 KRDSDAGSSTPTTSTR 16 2 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;K7EP28 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 1 KRDS(1)DAGSSTPTTSTR;KRDS(1)DAGSSTPTTSTR;KRDS(0.995)DAGS(0.005)STPTTSTR;KRDS(1)DAGSSTPTTSTR 140.73 1.3169999999999998e-06 774485000.0 390332.0 361025.0 330960.0 327621.0 346522.0 471281.0 433695.0 395366.0 544608.0 432296.0 True False 388230.4958819622 373041.4988807793 377556.2912441106 369097.78500826197 390649.5227031916 438702.45374614414 412715.51597421075 424870.21854786825 410396.6557733181 404706.4991727741 0.9592890074053936 0.921758112714477 0.9329138326561128 0.912013485730284 0.9652662448013186 1.084001503911744 1.0197896915858955 1.0498230678684655 1.0140599585432277 1.0 18.626516491838128 2.940038754587034 5.40689377004534 1.0361725931466863 0.9315214341633735 0.8016304948824486 0.024135367161719434 0.08052626157719882 4.875651938196843 0.006902300156794831 0.007457827070598439 871.041314499509 -2.940038754587034 -0.10465115898331279 KRDS(ph)QGTYSSR ddPTM_BT-474_Trastuzumab_2h_R1 8 KRDSQGTYSSR 11 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 KRDS(0.996)QGT(0.004)YSSR;KRDS(0.995)QGT(0.002)YS(0.003)SR;KRDS(1)QGTYSSR;KRDS(1)QGTYSSR;KRDS(0.988)QGT(0.012)YSSR;KRDS(0.994)QGT(0.006)YS(0.001)SR;KRDS(0.97)QGT(0.026)YS(0.004)SR;KRDS(0.974)QGT(0.011)YS(0.012)S(0.002)R 175.66 4.9941e-06 3799390000.0 1340629.0 1227194.0 1215794.0 1225614.0 1362163.0 1740542.0 1826557.0 1565142.0 2176087.0 1734825.0 True False 1333411.2024218848 1268040.4104355602 1386967.2273291107 1380776.6067349664 1535626.383877349 1620222.4283351563 1738199.459784657 1681940.843670037 1639819.516921881 1624106.9832415918 0.8210119260496616 0.7807616268631822 0.853987601580797 0.8501758941883515 0.9455204612274727 0.9976081902568498 1.070249360245558 1.0356096371884402 1.0096745681426282 1.0 20.631215238244128 3.109047562157234 1.3887740905159374 1.0346113197547118 0.8104641621543924 0.9352966637766038 0.024499533184595673 0.08794861277224326 0.3546317937373373 0.009033877152471186 0.011944461176217445 1285.427426995212 -3.109047562157234 -0.22414715760031934 KRDS(ph)SLR ddPTM_BT-474_Trastuzumab_2h_R1 4 KRDSSLR 7 2 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 KRDS(0.5)S(0.5)LR;KRDS(0.5)S(0.5)LR;KRDS(0.806)S(0.194)LR;KRDS(0.613)S(0.387)LR 82.645 0.018844 541371000.0 412584.0 448389.0 373301.0 354821.0 400714.0 374538.0 493401.0 451572.0 671550.0 538280.0 True False 410362.69358639175 463313.3568081253 425858.53600954125 399741.3022193834 451742.55268204183 348647.0696276176 469533.3086551409 485270.5956761532 506055.5008089698 503926.50955530675 0.8143304347066778 0.9194065960470688 0.8450806376218288 0.7932531721185649 0.8964453032659166 0.6918609420553872 0.931749570129747 0.9629788996502355 1.0042248050326659 1.0 18.942853827148518 2.0143686915571686 24.985108155471615 0.9755569177916369 0.8316219584917489 0.6084724483878696 0.05913642321572185 160.63996735458514 279328.8969304894 0.021654241312230878 0.01598635805774081 103.36385342970144 -2.0143686915571686 -0.14393495929988798 KREDCSPADKPYIDEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KREDCSPADKPYIDEAR 17 3 Q96DG6 Q96DG6 CMBL Carboxymethylenebutenolidase homolog 0 ; 220.34 1.7684000000000001e-15 2175900000.0 2206300.0 1995440.0 1702690.0 1727170.0 1656630.0 2431600.0 2191200.0 2079600.0 3548000.0 2551100.0 False True 2194421.525942975 2061857.0141310478 1942413.95195321 1945829.544909272 1867592.0108846996 2263509.2153707086 2085203.2848031216 2234790.3119948306 2673642.940764245 2388286.6138934083 0.9188267074719343 0.8633205923177655 0.8133085621522903 0.8147387058110088 0.7819798511704308 0.9477544287202253 0.8730959143148245 0.9357295305322059 1.1194816087863282 1.0 21.18754455150068 1.485200171051147 2.9357116408101076 1.0585261962095636 0.8560797643849953 0.6733656065516771 0.05493753575622087 0.13731594580618553 2.3583350690023033 0.0418432132579834 0.014692465419345291 30.56329484131115 -1.485200171051147 -0.20244643182456823 KREDDDDDDDDDDDYDNL ddPTM_BT-474_Trastuzumab_2h_R1 1 KREDDDDDDDDDDDYDNL 18 2 Q16594 Q16594 TAF9 Transcription initiation factor TFIID subunit 9 0 170.38 6.3158e-11 452920000.0 314550.0 235560.0 205830.0 193140.0 204830.0 303210.0 303820.0 277640.0 460410.0 298430.0 False True 312856.4977497903 243400.4722009732 234809.0748935678 217591.50419690955 230913.8863774728 282249.80637956585 289123.06589489087 298358.9066273537 346948.1246779213 279383.94190122274 1.1198084457567068 0.8712042307965873 0.8404530099177476 0.7788260939987733 0.8265109469287726 1.0102577995672934 1.0348592833481869 1.067917163015903 1.241832734970094 1.0 18.09188957605305 2.3740808152931834 1.994394713972051 1.0981537067372005 0.879361659343577 0.44670801400810045 0.10400148187841739 0.29942234815034896 2.435977247255808 0.04669377872449456 0.03474066739113014 236.635999846342 -2.3740808152931834 -0.21879204739362346 KREDS(ph)APPSSVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KREDSAPPSSVAR 13 2 Q9BZE4-2;Q9BZE4;Q9BZE4-3 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 1 KREDS(0.996)APPS(0.002)S(0.002)VAR 70.117 0.036117 74090000.0 88809.0 71074.0 76845.0 78646.0 56008.0 73849.0 83878.0 88768.0 113650.0 88239.0 True False 88330.86221160756 73439.6551248597 87664.1080512861 88602.57553624398 63140.28681457556 68743.99245184712 79820.50069492348 95392.31891477051 85642.48033197757 82607.51147479133 1.0692836599800344 0.8890190954035782 1.0612123097067008 1.0725728684283404 0.7643407444109191 0.8321760482135474 0.966262017459292 1.1547656770157109 1.0367396233466297 1.0 16.33398535096081 1.8978566185776558 7.589972186823246 1.0774524193048691 0.9439861690554392 0.19775878759979004 0.10364801358434364 0.4095031358025788 26.989758220214863 0.04647578955212542 0.028959881316430833 79.04176301772095 -1.8978566185776558 -0.13346625024942993 KREDSAPPSSVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KREDSAPPSSVAR 13 2 Q9BZE4-2;Q9BZE4;Q9BZE4-3 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 0 ; 178.58 8.1413e-06 177936000.0 258970.0 251390.0 232640.0 218510.0 234630.0 223100.0 246270.0 256980.0 346440.0 296080.0 False True 257575.73429427217 259757.3641815358 265393.6898568708 246173.34359566477 264508.73973903497 207677.6221209103 234356.97925724037 276157.15251799906 261064.5040581638 277183.92091315874 0.9292592926953012 0.9371299869263245 0.9574642316284219 0.8881227409752619 0.9542715856952796 0.7492412310091224 0.845492691225275 0.9962957144419594 0.9418457722876171 1.0 18.080484045434105 1.693956330778684 8.875932166083016 0.9759717353414022 0.8950653731787097 0.2931710971231398 0.06026437860889314 0.1678013920468629 24.255504616078433 0.03109658329945421 0.016580338548869943 49.42609855090186 -1.693956330778684 -0.08090636216269254 KREEGS(ph)DIEDEDMEELLNDTR ddPTM_BT-474_Trastuzumab_2h_R1 3 KREEGSDIEDEDMEELLNDTR 21 2 F5H5U2;Q8NHQ9;Q8NHQ9-2 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR 279.69 3.2213e-45 1525320000.0 564560.0 483980.0 458720.0 414840.0 443060.0 628590.0 570820.0 546730.0 802470.0 612020.0 True False 561520.4716885126 500088.98172791174 523303.7887342834 467358.70146549656 499481.0647776357 585137.0528416989 543207.2558558416 587529.768838687 604712.0210470911 572960.3596233162 0.9800337183146063 0.8728160217867208 0.9133333221836172 0.8156911619029878 0.8717550112995804 1.0212522437440315 0.948071270083963 1.0254283022737372 1.0554168554429306 1.0 19.128075803727665 2.7381644698963177 24.999950440641783 1.0075657628578611 0.8868182311897991 0.6252238191799708 0.046116324799017165 24.11111678727897 1521547.754500488 0.014669546049225032 0.014630267458147541 547.2231603147186 -2.7381644698963177 -0.12074753166806207 KREEILEEIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KREEILEEIAK 11 2 B7Z8Z7;A0AV96;A0AV96-2;D6R9D6;D6RBS9;D6REZ6 B7Z8Z7 RBM47 RNA-binding protein 47 0 80.245 0.014026 146980000.0 507940.0 461000.0 382500.0 377710.0 306150.0 495780.0 520970.0 448020.0 714730.0 506290.0 False True 505205.3074774397 476344.1063196154 436352.6752504 425528.047272521 345136.387806783 461507.8955405862 495768.69080133416 481453.52739946265 538594.3683913263 473978.1387433239 1.0658831413974272 1.0049917229992178 0.9206177238623668 0.8977799026780846 0.7281694230072638 0.9736902566101455 1.045973749160213 1.0157715895419956 1.1363274471251392 1.0 18.85446099378414 2.3892856817128805 4.786454855838221 1.0457649384393621 0.9199082521313175 0.30996664370113336 0.08799123790948923 0.27827074547559183 11.197876593853762 0.03339996794004389 0.027735813665656136 245.06747814325232 -2.3892856817128805 -0.12585668630804459 KREELSNVLAAMR ddPTM_BT-474_Trastuzumab_2h_R1 2 KREELSNVLAAMR 13 2 Q9Y3U8 Q9Y3U8 RPL36 60S ribosomal protein L36 0 ; 155.98 2.6408e-05 1495240000.0 2646400.0 2953900.0 3455200.0 2248400.0 1363580.0 2023060.0 2903800.0 1828270.0 5317000.0 2477900.0 False True 2632152.0764426803 3052218.7758297394 3941662.126863224 2533047.209466357 1537223.8304281346 1883210.6239709947 2763332.1004067706 1964704.7911669505 4006696.5941497986 2319758.300563077 1.1346665192678804 1.315748617038625 1.6991693168665292 1.0919444533732277 0.6626655156509206 0.8118132925804733 1.1912155243656308 0.8469437487043612 1.7272043355453237 1.0 21.14554306573558 3.4994399047730425 23.949494143567463 1.0079222246307413 1.3796347530676139 0.20544025169009983 0.3001323274661524 637.4487086465285 684025.4321028906 0.07898622171825864 0.12116734344000483 3158.2020039618096 -3.4994399047730425 0.3717125284368725 KREENLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KREENLK 7 2 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 49.833 0.090779 231190000.0 176340.0 200730.0 220610.0 236710.0 210990.0 217790.0 213960.0 167800.0 318460.0 229910.0 False True 175390.60503321592 207411.17670615253 251669.9704235053 266677.46172957716 237858.32586429224 202734.68992251475 203609.93739342663 180322.08807113493 239979.80014537217 215236.94696414587 0.8148722025054205 0.963641138901227 1.1692693748598304 1.2389948170654932 1.105099887445972 0.9419139826225386 0.9459804195575398 0.8377840822150899 1.114956347087324 1.0 17.715566222529997 2.7289983476688144 23.640529500838113 0.9464075048653648 1.069307642361826 0.09862953515710626 0.12612306195019152 610.6155774534794 1509603.6821323843 0.0435778346974953 0.041633192667954115 535.7946190074912 -2.7289983476688144 0.12290013749646111 KREHS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 7 KREHSPSK 8 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 KREHS(0.999)PS(0.001)K;KREHS(0.998)PS(0.002)K;KREHS(0.999)PS(0.001)K;KREHS(0.993)PS(0.007)K;KREHS(0.999)PS(0.001)K;KREHS(1)PSK;KREHS(1)PSK 143.5 0.00031329 3183709000.0 2637994.0 1916137.0 1486961.0 1351211.0 1441234.0 1303461.0 2075080.0 2037305.0 3716220.0 2455289.0 True False 2623791.333412686 1979914.461715725 1696312.1839032941 1522274.1740572168 1624766.6070368171 1213355.809087153 1974700.4528246033 2189339.0443251724 2800407.375796756 2298590.3539413284 1.1414784408686587 0.8613602934167114 0.7379793363331031 0.662264231400352 0.7068534870734472 0.5278695296909456 0.8590919427807743 0.9524703001433789 1.2183151169128401 1.0 21.132317946647504 1.6141109424609177 2.670003958289606 1.1037901787724034 0.7661247918373192 0.3975293385810391 0.1596515423736413 0.23437124796513534 3.8423485598943694 0.11388897924646942 0.045036103004271376 41.12547645494817 -1.6141109424609177 -0.3376653869350842 KREHS(ph)PSKEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KREHSPSKEK 10 3 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 KREHS(0.997)PS(0.003)KEK;KREHS(0.996)PS(0.004)KEK;KREHS(0.999)PS(0.001)KEK;KREHS(0.995)PS(0.005)KEK 107.99 0.0015772 1371590000.0 1738760.0 1497260.0 1168640.0 1375810.0 1465700.0 1499040.0 2065760.0 1847760.0 4033810.0 2227680.0 True False 1729398.7093543983 1547095.3939872158 1333174.3539990264 1549987.4049350226 1652348.2071154711 1395414.8931605958 1965831.296830458 1985649.2339351648 3039731.575784726 2085507.5551871974 0.8292459574423194 0.7418315940113421 0.6392565448555084 0.7432183120506097 0.7923002738617049 0.6691008573379835 0.9426152841982885 0.9521179767468791 1.4575500185670036 1.0 20.991967108025232 1.6594609015828838 1.9468649468692176 1.213764208079054 0.7415753357521497 0.6608861555261392 0.13118456110333684 0.16388217497142343 1.3030675830727843 0.09064629932502817 0.03460745391896276 45.652114892526306 -1.6594609015828838 -0.4721888723269043 KREPEDEGEDDD ddPTM_BT-474_Trastuzumab_2h_R1 12 KREPEDEGEDDD 12 2 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ;;;;;;;;;;; 194.96 3.4049e-06 22238660000.0 17396557.0 15139313.0 12424031.0 12987117.0 13361075.0 16588248.0 16335488.0 15399817.0 22391680.0 16252526.0 False True 17302895.87005118 15643215.881297035 14173226.573186664 14631284.680600889 15062528.703953996 15441541.46029557 15545278.037815811 16549029.543226216 16873550.497139767 15215275.876192445 1.1372055302083126 1.0281256816233082 0.9315129537259137 0.9616181001025861 0.9899609331121327 1.014870948508871 1.0216888713887682 1.0876588553429198 1.1089874830033182 1.0 23.85901715656595 1.8834380785416565 3.991435414906446 1.0737395063398187 1.00536304814506 0.14892988099504367 0.05702072153789792 0.37476203977008504 9.622106389864095 0.028704442114617847 0.01611460160278072 76.46066634867638 -1.8834380785416565 -0.0683764581947588 KRES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 4 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 KRES(0.972)ES(0.431)ES(0.267)DET(0.329)PPAAPQLIK;KRES(0.582)ES(0.722)ES(0.607)DET(0.089)PPAAPQLIK;KRES(0.833)ES(0.894)ES(0.227)DET(0.046)PPAAPQLIK;KRES(0.576)ES(0.576)ES(0.576)DET(0.272)PPAAPQLIK 146.25 6.6675e-07 1746740000.0 1668790.0 1190470.0 949690.0 1050670.0 1191810.0 1741300.0 1468000.0 1586900.0 2451490.0 1700810.0 True False 1659805.4200599995 1230094.0742956877 1083398.0971465409 1183684.7142723782 1343579.939088689 1620928.0295792948 1396987.23169541 1705322.5361149218 1847353.1377830158 1592262.8496633014 1.0424192339920388 0.7725446050291273 0.680414102091018 0.7433978093018243 0.8438179282853966 1.0180027938992955 0.877359684671922 1.0710056674848176 1.1602061419530423 1.0 20.602647083977093 2.3246640402228924 1.0975715492391653 1.0759408821705405 0.8003196884627473 0.4807605257293627 0.10914843586817073 0.42747560436173887 1.0062488142868689 0.07341481767456215 0.044858294775666975 211.185472770662 -2.3246640402228924 -0.27562119370779326 KRES(ph)ESES(ph)DETPPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 KRES(0.619)ES(0.395)ES(0.512)DET(0.474)PPAAPQLIK;KRES(0.65)ES(0.436)ES(0.909)DET(0.005)PPAAPQLIK 202.38 5.7381e-21 3148840000.0 1892990.0 1470280.0 1104920.0 1208670.0 1290870.0 1994680.0 1754300.0 2008570.0 3016600.0 1942630.0 True False 1882798.3521709605 1519217.3809969723 1260483.1318631952 1361687.4980722715 1455254.6429140698 1856792.4665716572 1669437.8069232018 2158459.6927117966 2273199.350369058 1818649.6902307817 1.0352726873596192 0.8353545980612614 0.6930873706102484 0.7487354521251848 0.8001841425158696 1.0209731299797684 0.917954576898949 1.18684741998768 1.249937996624625 1.0 20.7944362459925 2.17665569604833 1.3896432612821426 1.1581489121474662 0.8168479393152791 0.5563614022583452 0.11612831229769581 0.2973153398178019 1.104806920695548 0.07366065714328526 0.04058468797489377 150.19507637020982 -2.17665569604833 -0.3413009728321871 KRES(ph)ESESDET(ph)PPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 KRES(0.453)ES(0.453)ES(0.453)DET(0.641)PPAAPQLIK 128.59 3.6773e-05 1006900000.0 470250.0 313580.0 251080.0 270430.0 320170.0 463160.0 423490.0 457030.0 679090.0 471290.0 True False 467718.22624968673 324017.3207368873 286429.8815735172 304666.41027218744 360941.75170373265 431142.83936136554 403004.1708110967 491135.89935131586 511737.36883979355 441211.86870833073 1.0600762568308841 0.7343803367880012 0.6491889767427488 0.690521792090755 0.8180689988245494 0.977178697897582 0.9134028329539525 1.1131520572851772 1.159844975018305 1.0 18.751112074741318 2.350032528599839 1.2976933470586027 1.0925803541196935 0.7716519430861818 0.5273745758322198 0.11793844646077593 0.33597374536755586 1.1243086106781592 0.06995859581621428 0.04496638713424126 223.88888247682962 -2.350032528599839 -0.32092841103351166 KRES(ph)ESESDETPPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 KRES(0.332)ES(0.332)ES(0.332)DET(0.005)PPAAPQLIK;KRES(0.804)ES(0.16)ES(0.031)DET(0.005)PPAAPQLIK 141.22 1.0095e-07 1249850000.0 1175090.0 958030.0 805010.0 825690.0 894490.0 1262570.0 1187450.0 1147720.0 1658250.0 1256040.0 True False 1168763.4460047719 989917.4494086367 918348.4107276457 930222.269340098 1008397.9994423947 1175291.5076700933 1130008.5070004873 1233368.69440407 1249596.5069115842 1175878.4518500534 0.9939491995672791 0.8418535502977903 0.7809892334388592 0.79108709567434 0.8575699281297693 0.9995008462149837 0.9609909129830577 1.0488913139479383 1.0626919006344129 1.0 20.16530750877057 2.7122645078175682 3.2150394660825303 1.0193853748787527 0.8429102169509678 0.6443378100490162 0.059904801593037356 0.16196713476265132 3.4488809726376415 0.02111129156438518 0.020715023238412945 515.5425410732648 -2.7122645078175682 -0.1764751579277849 KRESES(ph)ES(ph)DETPPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 KRES(0.131)ES(0.937)ES(0.93)DET(0.002)PPAAPQLIK;KRES(0.555)ES(0.796)ES(0.645)DET(0.004)PPAAPQLIK 199.75 7.016100000000001e-21 1411850000.0 1823910.0 1354420.0 992880.0 1130760.0 1233720.0 1806920.0 1633310.0 1762610.0 2710200.0 1749430.0 True False 1814090.2712154496 1399501.0509358197 1132668.8737323333 1273914.100060565 1390826.929168656 1682011.87343216 1554300.5554498855 1894144.9085522266 2042307.524819403 1637779.8796376246 1.1076520683700397 0.8545110782808454 0.6915879770014929 0.777829863401687 0.849214809914743 1.0270072885523065 0.9490289719481658 1.1565320420051353 1.2469975667739208 1.0 20.643310038699322 2.220512117460774 1.3568401174021718 1.1438563958737804 0.8455471002117417 0.4595527380181166 0.12241355767118872 0.36782629814569123 1.31442935713983 0.0772490710833975 0.04413772665958804 166.154503669307 -2.220512117460774 -0.2983092956620387 KRESES(ph)ESDETPPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 KRES(0.206)ES(0.595)ES(0.198)DET(0.001)PPAAPQLIK 204.53 7.5158e-22 337080000.0 414080.0 334280.0 325270.0 309420.0 334820.0 452850.0 391210.0 433290.0 555800.0 454200.0 True False 411850.63928861334 345406.3077234729 371065.18870247743 348592.5402744526 377457.3423663794 421545.5453942367 372285.6777326714 465624.30000203854 418830.5373384345 425212.567139816 0.9685758867827416 0.8123144385097592 0.8726580947464468 0.819807708458039 0.8876909375123572 0.9913760268887502 0.875528398035937 1.0950388958022836 0.9849909661788453 1.0 18.697824710728135 2.314370999027057 1.1703279130926145 1.0263804309394047 0.8651264005372324 0.4649360056220776 0.06311458831710132 0.37178053692378576 0.9970259798004001 0.03838265623938074 0.02337098501976424 206.23909725372567 -2.314370999027057 -0.16125403040217223 KRESESES(ph)DETPPAAPQLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 KRES(0.168)ES(0.198)ES(0.635)DETPPAAPQLIK 229.99 1.5615999999999998e-25 482170000.0 786100.0 647800.0 576250.0 497930.0 625270.0 814210.0 754440.0 807160.0 1126000.0 872260.0 True False 781867.7249439198 669361.6313966314 657380.9911452101 560967.8869460871 704894.4282343539 757925.5791441795 717944.8549593223 867394.37787543 848512.3876269833 816591.6200206432 0.9574770372051509 0.8197018129817571 0.8050302930228352 0.6869625810413117 0.8632153587573362 0.9281574296892973 0.8791969417236645 1.0622131756060667 1.03909024636517 1.0 19.639255236934122 2.1113378014242525 1.3263022583000976 1.0413495487561346 0.8204900021818753 0.5870118929595447 0.07104751553893353 0.29968805026928064 0.9960291912892197 0.04889854240709221 0.025150820133446553 129.22239959946782 -2.1113378014242525 -0.22085954657425932 KRET(ph)DDEGEDD ddPTM_BT-474_Trastuzumab_2h_R1 3 KRETDDEGEDD 11 2 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD 223.72 1.0828e-11 20694100000.0 1873050.0 1503260.0 1120610.0 1245150.0 1262640.0 1309540.0 1651040.0 1640890.0 2352630.0 1647410.0 True False 1862965.7069154165 1553295.1003601402 1278382.147483269 1402785.862331895 1423429.719746389 1219014.5821255788 1571172.8876147089 1763341.5440705877 1772855.860126885 1542270.8833813402 1.2079367684300513 1.0071480419539725 0.8288959878957772 0.9095586757472641 0.9229440399118481 0.7904023834340693 1.018739901365448 1.143341006480368 1.1495100369398146 1.0 20.55662475078257 1.9990659433040396 24.992378984060675 1.1054179766129553 0.9365977755431073 0.2694237034347756 0.11268882379090503 41.65975606067957 1114703.142533283 0.04400134698273342 0.032097373498175555 99.78515661707226 -1.9990659433040396 -0.16882020106984796 KRETDDEGEDD ddPTM_BT-474_Trastuzumab_2h_R1 1 KRETDDEGEDD 11 2 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 0 170.52 6.203199999999999e-05 213250000.0 525340.0 523180.0 441850.0 461400.0 493210.0 497620.0 598690.0 519600.0 705670.0 619110.0 False True 522511.62781076046 540593.7300310119 504058.6393709516 519813.1926915918 556017.3700152973 463220.7006714802 569729.0774821024 558375.1904753374 531767.0839935467 579597.8697532621 0.9015071570797809 0.9327048256080469 0.8696695858898378 0.8968514548075875 0.9593157584447245 0.799210495491772 0.9829730356404504 0.9633837866123295 0.9174759117384657 1.0 19.144692766878148 KRETEDVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRETEDVPK 9 2 O43148;O43148-2 O43148 RNMT mRNA cap guanine-N7 methyltransferase 0 ; 119.53 0.00045698 320900000.0 732210.0 671540.0 592370.0 480470.0 567500.0 756290.0 780800.0 732510.0 1161480.0 812740.0 False True 728267.8627161785 693891.8029454973 675770.5470276577 541297.4527363004 639767.7611639699 704009.452415164 743029.7210543447 787173.6158104113 875248.817034626 760870.2373782787 0.9571512025829295 0.911971278225354 0.888154791487379 0.7114188808349797 0.8408368861534259 0.9252687486383496 0.9765524849737757 1.0345701239711593 1.1503260004629174 1.0 19.537290904704886 2.0766435106645376 1.6300877215613476 1.0707431344175113 0.8603167681572873 0.6063060290177107 0.06992133442662533 0.2679413757147477 1.348795761356747 0.045444648984420896 0.02377811178527934 119.30084250137813 -2.0766435106645376 -0.21042636626022404 KREVS(ph)PPGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KREVSPPGAR 10 2 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 KREVS(1)PPGAR;KREVS(1)PPGAR 61.11 0.048902 153411000.0 369925.0 352153.0 302475.0 289386.0 294831.0 370347.0 387308.0 245457.0 527514.0 363263.0 True False 367933.36490253086 363874.19972401607 345060.8508401688 326022.23792858503 332375.9802497522 344745.7835930647 368572.4323797593 263774.2477453911 397515.2430254536 340079.2443348987 1.0819047943431748 1.0699688551580198 1.0146483697204536 0.9586654974083899 0.9773486203187378 1.0137219172763468 1.0837839665886857 0.7756258346823277 1.1688900444450347 1.0 18.37551143282345 4.138439483385391 2.8330598589138916 0.9804527310754694 1.0796452522044582 0.07973204553745239 0.09497913791086428 0.522092105514604 8.311487353764862 0.024397540199502802 0.06730605227930299 13754.33137665742 -4.138439483385391 0.0991925211289888 KRLDS(ph)ELK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRLDSELK 8 2 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 1 KRLDS(1)ELK 90.653 0.010273 288750000.0 599740.0 452180.0 381270.0 379630.0 324210.0 507440.0 557210.0 491020.0 897830.0 563770.0 True False 596511.0664773786 467230.5379514179 434949.501941751 427691.11907565896 365496.2217567768 472361.86718527373 530255.6235510902 527662.4057490382 676571.8268056259 527789.7159322199 1.130205929503151 0.8852588897571867 0.8240962050075419 0.8103437906520031 0.692503492818558 0.8949811883904454 1.004672140332471 0.9997587861617258 1.2818965705131569 1.0 19.009603714229197 1.8283961665497135 1.7035024239714223 1.1238321252940142 0.8621848043369285 0.39111976545317306 0.12567965592247152 0.35456389689513806 1.9626105004876264 0.08948339269713329 0.038427122203662366 67.35908305145213 -1.8283961665497135 -0.26164732095708576 KRNDS(ph)EEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KRNDSEEEER 10 2 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 KRNDS(1)EEEER;KRNDS(1)EEEER;KRNDS(1)EEEER 160.65 5.76e-06 802290000.0 1657960.0 1426990.0 1139300.0 1197820.0 1283670.0 1352600.0 1538080.0 1490350.0 1928270.0 1585950.0 True False 1649033.727576672 1474486.4995163272 1299703.5370268775 1349463.8891847474 1447137.7655918112 1259097.9456779156 1463677.194363812 1601567.4848439558 1453073.695994213 1484733.3131998915 1.1106598827655325 0.9930985493539709 0.8753784437056655 0.9088931171594635 0.9746785855251981 0.8480296996666106 0.9858182485373758 1.0786903416292748 0.978676563040506 1.0 20.501772387706456 1.9983472312363297 24.992887535863552 1.0289628368571446 0.9465879791712339 0.14402051358026124 0.07205395191063614 99.0314236879759 1497550.0862428334 0.02797833671950108 0.020355421019290686 99.6201591555855 -1.9983472312363297 -0.08237485768591069 KRNDS(ph)EEEERER ddPTM_BT-474_Trastuzumab_2h_R1 2 KRNDSEEEERER 12 3 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 KRNDS(1)EEEERER;KRNDS(1)EEEERER 216.71 2.1227e-10 950080000.0 535300.0 496271.0 387325.0 450325.0 501793.0 573380.0 587788.0 583019.0 766530.0 581221.0 True False 532418.0042774214 512789.08023284527 441856.9933107481 507336.0988271379 565693.3641898708 533743.5901913379 559354.448871787 626526.8382904946 577628.9524757646 544126.9781716672 0.9784811737628055 0.9424070130760267 0.8120475753572104 0.9323854893794256 1.039634840548927 0.9809173439346478 1.0279851419080268 1.1514349837894475 1.061570140147559 1.0 19.05358383437214 2.8125458950118896 1.1498980932134397 1.079081584669471 0.9114960395578673 0.4930926525328252 0.060657795702645935 0.3638519046149305 1.0078674375087537 0.030276825044500584 0.030388327279095056 649.4502600155947 -2.8125458950118896 -0.16758554511160373 KRNEDEDSPNK ddPTM_BT-474_Trastuzumab_2h_R1 6 KRNEDEDSPNK 11 2 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 0 ;;;;; 224.42 3.4983e-12 8431190000.0 7652111.0 5938044.0 5217073.0 4936726.0 5189602.0 6447263.0 7163342.0 6834773.0 10937598.0 7131038.0 False True 7610912.884605453 6135688.204916608 5951591.530788567 5561715.005426076 5850467.053519046 6001578.884034623 6816823.78083616 7344818.46753406 8242173.529204372 6675929.049651218 1.1400529915762188 0.9190763052278342 0.8915001172907172 0.8330997774334715 0.8763524911674582 0.8989878171860102 1.021104887445187 1.100194207114557 1.2346107137904623 1.0 22.67053719145125 1.9356247228335846 2.4706626413642163 1.1255543466133746 0.9184183983387236 0.43571578074348905 0.09384963459058497 0.2534252038941886 2.8255084981574297 0.05196196959462528 0.027127653412761507 86.22331635298055 -1.9356247228335846 -0.20713594827465098 KRNEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRNEELK 7 2 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3 Q92878-2 RAD50 DNA repair protein RAD50 0 55.53100000000001 0.07147200000000001 86904000.0 147280.0 144710.0 147950.0 122730.0 108560.0 129970.0 159950.0 130920.0 236620.0 159930.0 False True 146487.06084434636 149526.58487095768 168780.07399554687 138267.60541620976 122384.47251446794 120985.4798164712 152212.60743166294 140689.91519828964 178308.17154555678 149723.1304770384 0.9783863079646982 0.9986872729320146 1.1272812254044546 0.923488608444602 0.8174052474359457 0.808061382573253 1.0166272034701167 0.9396672027230015 1.1909193387651096 1.0 17.191937592604877 -0.4372789881667214 6.803130445781069 1.000004275702551 0.9708501088314383 2.245201377171213e-05 0.1136175095862532 0.0 0.0 0.11209668142191621 0.026421441193981685 0.3653600111336816 0.4372789881667214 -0.029154166871112608 KRPAS(ph)PSHNGSSGGGYGASK ddPTM_BT-474_Trastuzumab_2h_R1 3 KRPASPSHNGSSGGGYGASK 20 2 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 KRPAS(0.941)PS(0.059)HNGSSGGGYGASK;KRPAS(0.965)PS(0.016)HNGS(0.009)S(0.009)GGGYGASK;KRPAS(0.852)PS(0.065)HNGS(0.065)S(0.019)GGGYGASK 250.7 4.4238999999999985e-31 735603000.0 712590.0 741450.0 667300.0 682380.0 696700.0 875040.0 869920.0 865750.0 1033800.0 867280.0 True False 708753.4946161918 766128.7150340095 761250.0397244232 768769.2380340027 785420.6153355724 814550.5444225968 827838.6461828838 930356.6611894224 779033.8422102802 811929.4478842352 0.8729249769953483 0.9435902553238149 0.9375815124185053 0.9468424135093247 0.9673508177123754 1.0032282318927979 1.0195943112300034 1.1458589950318843 0.959484650101464 1.0 19.630994845185082 2.7801050595540886 1.2236741012902477 1.0539453284375244 0.9221846189450223 0.4734633325760472 0.049367046417491046 0.34367690047049954 1.065716374894668 0.02314405560241601 0.022581443130700152 602.7053680302606 -2.7801050595540886 -0.13176070949250207 KRPES(ph)PPSILTPPVVPTADK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRPESPPSILTPPVVPTADK 20 2 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 KRPES(0.496)PPS(0.496)ILT(0.008)PPVVPTADK 138.3 1.0716e-06 256400000.0 415620.0 337810.0 283920.0 258350.0 257470.0 383070.0 368380.0 376530.0 517330.0 374990.0 True False 413382.34809972293 349053.80163954286 323893.46812312026 291057.083510778 290257.2783557483 356589.27254978544 350560.05205174116 404628.58058059856 389840.9533668445 351057.81715490884 1.1775335226827113 0.9942914943993921 0.9226214381097175 0.8290858920892373 0.8268076202036785 1.01575653674288 0.9985820993612912 1.1525981214714012 1.1104750679709892 1.0 18.421349127911128 2.0732618527477604 2.456307714262721 1.1003865811126436 0.9465986552742159 0.2244735446277223 0.1013346684285686 0.38581826328176266 4.521154413306523 0.05333371371845849 0.03174223378338971 118.37550717924361 -2.0732618527477604 -0.1537879258384277 KRPESPPS(ph)ILTPPVVPTADK ddPTM_BT-474_Trastuzumab_2h_R1 3 KRPESPPSILTPPVVPTADK 20 2 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 KRPES(0.07)PPS(0.829)ILT(0.102)PPVVPTADK;KRPES(0.431)PPS(0.565)ILT(0.004)PPVVPTADK;KRPES(0.366)PPS(0.569)ILT(0.065)PPVVPTADK 153.14 2.9385e-08 5690120000.0 1660030.0 1318090.0 1202200.0 1029820.0 1025880.0 1607670.0 1540000.0 1438150.0 2076370.0 1398760.0 True False 1651092.582926672 1361961.8288477706 1371459.310290276 1160195.1064101777 1156519.7371328503 1496535.5569481123 1465504.3166287031 1545472.0557777279 1564676.4354325389 1309489.9392613156 1.2608669478270713 1.0400704793624107 1.0473232891456328 0.8859900879151807 0.8831833696906782 1.1428385297807704 1.1191413333464748 1.1802091863718556 1.1948747283351975 1.0 20.32057354490916 2.599070807556389 20.4231728338523 1.1411775497679741 1.0175692647036612 0.17644196115845556 0.10990259736015788 6.983154815524708 1140.612089584889 0.0367787328685981 0.03467524695914198 397.25631302739623 -2.599070807556389 -0.12360828506431298 KRPIYEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRPIYEDK 8 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 ; 80.165 0.01471 1721720000.0 1339970.0 1429500.0 1227170.0 1149870.0 1237760.0 1486340.0 1519510.0 1476840.0 2230800.0 1690860.0 False True 1332755.7504046618 1477080.043349001 1399944.869247144 1295443.4241011732 1395381.3992217004 1383592.8142680123 1446005.496208104 1587049.3000415657 1681049.2311885215 1582947.8671819218 0.8419454475006368 0.9331198291315845 0.8843910139248156 0.8183740292138711 0.8815081204827416 0.874060885360163 0.9134890201926785 1.0025910094354185 1.0619738438899107 1.0 20.594182311851316 1.7705492673764567 2.2917891626458315 1.0330862007074293 0.873752076053674 0.8196386557374664 0.03145561413593256 0.11040933681517792 1.1572923682603444 0.020066775397193475 0.008931826511482131 58.958885760362186 -1.7705492673764567 -0.1593341246537553 KRPQS(ph)PS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR 78.653 0.015641 167350000.0 182969.0 175282.0 118340.0 148462.0 164034.0 188733.0 190488.0 174269.0 257830.0 201937.0 True False 181983.91523376698 181116.15540979366 135001.24337028063 167257.27397784838 184922.7575943095 175686.3319396939 181273.36770517423 187273.83770005137 194291.25124499563 189049.20777303603 0.9626272301138055 0.9580371033727555 0.7141063692388335 0.8847287748417858 0.9781726132188793 0.9293153566166487 0.9588686979466365 0.9906089525901844 1.0277284604030341 1.0 17.52840227803698 2.5016876720130616 0.97253388841051 1.0052070457982647 0.8814287125088945 0.3310926071559306 0.06877060295125492 0.6843827426503304 1.3104930345388077 0.04684151028861475 0.03392666560757226 317.4590205612706 -2.5016876720130616 -0.12377833328937016 KRPQS(ph)PSPR ddPTM_BT-474_Trastuzumab_2h_R1 6 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 KRPQS(0.998)PS(0.002)PR;KRPQS(0.997)PS(0.003)PR;KRPQS(0.751)PS(0.249)PR;KRPQS(0.999)PS(0.001)PR;KRPQS(1)PSPR;KRPQS(0.944)PS(0.056)PR 95.401 0.0059019 3905620000.0 3564144.0 3543971.0 3241014.0 3009569.0 3204788.0 3514266.0 3717931.0 3593329.0 4379088.0 3525197.0 True False 3544955.044717626 3661929.932359295 3697320.599801306 3390580.126821942 3612898.7555333152 3271333.0631123404 3538080.4736543265 3861481.4565349435 3299920.439172891 3300215.909387006 1.0741585223665195 1.1096031389774965 1.1203268820336243 1.0273813047134 1.0947461786536228 0.9912481949461208 1.0720754553030145 1.1700693416910983 0.9999104694292047 1.0 21.65412898204144 1.1028401681789097 24.999999332509983 0.9998430220232033 1.083982238323772 0.3353325657394426 0.04641746481149387 11.001210810420082 2633.9067597852772 0.04674975357654252 0.011687438394225909 12.671854223819828 -1.1028401681789097 0.08413921630056875 KRPYEENR ddPTM_BT-474_Trastuzumab_2h_R1 9 KRPYEENR 8 2 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0;M0R0K8;M0QYI8;M0QZV6;M0R203 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;;;;;;; 191.85 0.00010068 5853056000.0 2715920.0 3265160.0 3201070.0 2861410.0 2644440.0 2799160.0 3108730.0 2570410.0 3937600.0 2923090.0 False True 2701297.788487079 3373838.8767691017 3651752.8318007765 3223664.2126130196 2981193.7591761188 2605660.657713884 2958348.853398146 2762227.0464775115 2967231.2411367786 2736535.8936167457 0.9871230977777916 1.2328867619236903 1.3344436081832032 1.1780091100330718 1.089404223101938 0.9521748513483262 1.0810561119621351 1.0093882024060759 1.0843019629518305 1.0 21.38391934902078 3.1390358081735186 3.4498513684877454 1.028703455589583 1.1986053849567575 0.41004609421586 0.08823529669043352 0.2232088217652184 5.2060779337386744 0.026499321894255065 0.03280046041105387 1377.3230263781047 -3.1390358081735186 0.1699019293671744 KRQDCSSS(ph)DTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRQDCSSSDTEK 12 2 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;P46100-3;A0A096LP59 P46100;P46100-3;A0A096LP59 ATRX Transcriptional regulator ATRX 1 KRQDCS(0.002)S(0.015)S(0.983)DTEK;KRQDCSS(0.011)S(0.989)DTEK 144.68 3.3005e-05 114936000.0 74977.0 63156.0 53165.0 47460.0 50164.0 58853.0 70100.0 67317.0 119592.0 78154.0 True False 74573.33216272783 65258.1092813918 60650.16988153595 53468.4311338166 56552.08805467729 54784.6306350602 66708.99519199482 72340.53636879979 90120.15405069824 73166.1448089942 1.0192327661571783 0.8919167389747413 0.8289376191661846 0.7307810364124011 0.7729269896932636 0.7487702239619111 0.9117467561827091 0.9887159772822564 1.2317193189003435 1.0 16.158888623487755 1.6404723958982872 2.461533715629431 1.113555724646798 0.8300062474585638 0.5653753296397075 0.09632309424874924 0.17761782807258925 2.427034141227261 0.06821316697075325 0.02714078365638602 43.69909026995215 -1.6404723958982872 -0.2835494771882342 KRQEEIER ddPTM_BT-474_Trastuzumab_2h_R1 7 KRQEEIER 8 2 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;H0YFJ7 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ;;;;;; 174.48 0.00015281 1233473000.0 725259.0 808547.0 728920.0 702017.0 675583.0 734577.0 813365.0 736841.0 984608.0 838957.0 False True 721354.2861278504 835458.9981180177 831545.6001137808 790892.2802205747 761614.4905558375 683797.42099826 774019.4275939643 791827.8170227838 741964.551471252 785414.0459927764 0.9184382298842728 1.0637179235341834 1.0587353312006196 1.0069749634040142 0.9696980776466051 0.8706203110156105 0.9854922146389563 1.0081661017685268 0.9446795040867858 1.0 19.583093873183323 3.2818988155797855 4.381025195567024 0.9636517916033476 1.0203006990278967 0.17417408874071183 0.05156397556398432 0.34612457101707045 14.2741822336015 0.015147502811370228 0.020216325436801463 1913.8099826435077 -3.2818988155797855 0.05664890742454909 KRQPS(ph)MSETMPLYTLCK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRQPSMSETMPLYTLCK 17 2 A0A0A0MR03;Q9Y5B0;K7EJD2 A0A0A0MR03 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 KRQPS(0.333)MS(0.333)ET(0.333)MPLYTLCK 138.57 1.6691e-06 208790000.0 184220.0 219240.0 182810.0 189760.0 193070.0 218630.0 201530.0 228530.0 403990.0 246260.0 True False 183228.17998876606 226537.27086662123 208548.05898699482 213783.59654346877 217656.3200844538 203516.62269966205 191781.22398063776 245584.0690518262 304432.0776886542 230543.4759662069 0.7947662766029592 0.9826227782729671 0.9045931927284893 0.9273027382254149 0.9441009734595912 0.882768952132454 0.831865760576756 1.065239725490319 1.3204974741218785 1.0 17.81467931466345 1.5507243840952354 4.7238053259185255 1.1703030136443227 0.9027636510003418 0.6022852610152503 0.08850051333878636 0.09241270470973366 4.507283908262525 0.04770481346795939 0.02095751839696323 35.54056961955336 -1.5507243840952354 -0.2675393626439808 KRQS(ph)PEPSPVTLGR ddPTM_BT-474_Trastuzumab_2h_R1 7 KRQSPEPSPVTLGR 14 2 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 KRQS(0.996)PEPS(0.003)PVT(0.001)LGR;KRQS(1)PEPSPVTLGR;KRQS(0.818)PEPS(0.18)PVT(0.002)LGR;KRQS(0.983)PEPS(0.017)PVTLGR;KRQS(0.997)PEPS(0.003)PVTLGR;KRQS(0.913)PEPS(0.015)PVT(0.072)LGR;KRQS(0.989)PEPS(0.007)PVT(0.004)LGR 177.6 1.6373e-06 6504610000.0 2771340.0 3553340.0 3491140.0 3408020.0 3280200.0 3907210.0 3930770.0 3633340.0 4998630.0 4076890.0 True False 2756419.4133648165 3671610.773860612 3982662.1664671367 3839474.98256784 3697914.026731373 3637113.769283021 3740623.6381003927 3904478.280526684 3766784.614710365 3816699.389798865 0.7221997678758966 0.96198584139845 1.043483324128657 1.0059673530563733 0.9688774642862947 0.9529474024085224 0.9800676595327876 1.0229986388140577 0.9869220051173245 1.0 21.863894131061027 4.729455236324142 3.924407304032498 0.9950927730294811 0.6988817680599836 0.9157140468406094 0.024677863935928693 0.06262143681924365 1.97518977103553 0.006432586163601723 0.05241379766829557 53635.85849463789 -4.729455236324142 -0.2962110049694975 KRQS(ph)S(ph)ESDIESVIYTIEAVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRQSSESDIESVIYTIEAVAK 21 2 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 2 KRQS(0.626)S(0.626)ES(0.626)DIES(0.122)VIYTIEAVAK 94.384 0.007777600000000002 22036000.0 27325.0 27111.0 21279.0 22653.0 25180.0 36436.0 38172.0 29435.0 45926.0 37086.0 True False 27177.885236092894 28013.373246054412 24274.898239616374 25520.86747733559 28386.52374644714 33917.265081118276 36325.47452879922 31631.589167901428 34608.15267687106 34719.13972907801 0.7827925878396936 0.8068567788444546 0.6991791394901884 0.7350662394426014 0.8176044673904415 0.9769039597692524 1.0462665495820413 0.9110706490636146 0.9968032891058648 1.0 15.08344358067375 2.8401469744552865 3.262026405404656 0.9810390357860058 0.7569981760493186 0.8768143034439032 0.04128469652026093 0.0889011825240865 1.7988790928230873 0.013992115079103185 0.014855656598066837 692.0651408010411 -2.8401469744552865 -0.2240408597366872 KRRT(ph)ES(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 KRRTESR 7 3 Q6IQ21 Q6IQ21 ZNF770 Zinc finger protein 770 2 KRRT(1)ES(1)R 58.246 0.0882 1259800000.0 2214300.0 1893200.0 1819900.0 1840000.0 1931000.0 2305200.0 2192400.0 2201500.0 2881700.0 2315800.0 True False 2202378.454831859 1956214.0175364332 2076126.1011456267 2072943.8113405502 2176901.4040662986 2145846.9498571143 2086345.2362186767 2365787.108990485 2171543.6478016665 2168003.661343873 1.0158555052746905 0.9023112148822855 0.9576211231390198 0.9561532797668808 1.004104117940885 0.9897801318873122 0.9623347383672871 1.091228373444726 1.0016328323244617 1.0 21.047935762454237 2.52168520655656 0.9722282192231273 1.0330429689750817 0.9549650209429726 0.25466304576333965 0.04045933176101146 0.5945074518438049 1.1427033667185016 0.025445777103888144 0.018802941481433716 332.41851614617855 -2.52168520655656 -0.0780779480321091 KRS(ph)EGFSMDR ddPTM_BT-474_Trastuzumab_2h_R1 10 KRSEGFSMDR 10 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 KRS(0.95)EGFS(0.05)MDR;KRS(0.938)EGFS(0.062)MDR;KRS(0.987)EGFS(0.013)MDR;KRS(0.995)EGFS(0.005)MDR;KRS(0.912)EGFS(0.088)MDR;KRS(1)EGFSMDR;KRS(0.985)EGFS(0.015)MDR;KRS(0.823)EGFS(0.177)MDR;KRS(0.909)EGFS(0.091)MDR;KRS(0.5)EGFS(0.5)MDR 110.25 0.0015048 37390980000.0 22639428.0 20350822.0 18191080.0 19731936.0 18064368.0 22841970.0 23072919.0 21083617.0 32187502.0 24059971.0 True False 22517539.835124888 21028186.807938293 20752225.94429816 22229997.074439008 20364758.18890232 21262958.378113706 21956793.760859963 22656983.56097783 24255323.422529586 22524443.052002512 0.9996935233043638 0.9335718871889622 0.9213202695572623 0.9869277132897931 0.9041181680668375 0.9439948561224623 0.9747985204414595 1.005884296835634 1.0768445358018826 1.0 24.424988098061768 1.7143892440162136 2.2314445930803655 1.0383506381890455 0.9470072979210967 0.5506398729232209 0.0323476411214258 0.18915825232995204 1.9840006525774911 0.020766918819621904 0.008688748357714049 51.80709540736286 -1.7143892440162136 -0.09134334026794877 KRS(ph)FVPEEEKHEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KRSFVPEEEKHEER 14 3 A0A0U1RRH6;O94880;O94880-2;B4DG57 A0A0U1RRH6 PHF14 PHD finger protein 14 1 KRS(1)FVPEEEKHEER;KRS(1)FVPEEEKHEER;KRS(1)FVPEEEKHEER 167.53 2.5929e-06 1692360000.0 877850.0 788160.0 683130.0 755250.0 836590.0 1104530.0 911130.0 880180.0 1620960.0 983640.0 True False 873123.753138304 814393.4291472196 779308.7661275957 850864.5725624735 943124.777642583 1028176.4408839477 867055.161045396 945863.501063479 1221496.127751185 920863.2530634273 0.9481578836311377 0.8843804185235805 0.8462806649468055 0.9239858032470186 1.0241746258253857 1.1165354220222412 0.9415677715024153 1.0271487084720599 1.3264685323120944 1.0 19.81262740841386 3.212887679139323 2.9893604147126505 1.0678497415455475 0.8912182192201584 0.4294401210885701 0.09854737999053079 0.26066159731344685 4.783554340217245 0.029761058062578224 0.038711676153149355 1632.6296489924373 -3.212887679139323 -0.17663152232538903 KRS(ph)GNSDSIER ddPTM_BT-474_Trastuzumab_2h_R1 2 KRSGNSDSIER 11 2 C9J8U3;A0A0A0MRW7;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-10;Q7Z2E3-8;Q7Z2E3-7;Q7Z2E3;A0A5F9ZI51;A0A5F9ZGW5;Q7Z2E3-13;Q7Z2E3-9;Q7Z2E3-11 C9J8U3 APTX Aprataxin 1 KRS(0.921)GNS(0.073)DS(0.006)IER;KRS(0.93)GNS(0.056)DS(0.014)IER 125.73 0.0013390999999999998 237090000.0 252120.0 322575.0 273626.0 304196.0 299560.0 328308.0 372120.0 294265.0 456650.0 383510.0 True False 250762.61393316553 333311.7138742944 312150.1624001722 342707.1824100818 337707.1903687735 305612.8407139028 354119.1339635531 316224.5485473933 344114.7262965029 359034.0634605699 0.6984368321940712 0.9283567989667911 0.8694165656358492 0.9545255375127347 0.9405993044608744 0.8512084835857532 0.9863106874884128 0.88076475390509 0.9584459005915313 1.0 18.453761201087726 5.286493407787071 1.6813534965816586 0.9267566188385472 7.141242668240515e-07 0.6724021045454734 0.0479355164060002 3.110765172116175 2.3315946485486103 0.011353662658864812 7.3967890529554925 193416.44994597166 -5.286493407787071 -0.9267559047142804 KRS(ph)ISESSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSISESSR 9 2 Q9H307 Q9H307 PNN Pinin 1 KRS(0.993)IS(0.007)ESSR 86.772 0.010956 146550000.0 56718.0 113000.0 87580.0 96403.0 109120.0 108740.0 133070.0 97073.0 158670.0 109180.0 True False 56412.63658996219 116761.13669005738 99910.5027409936 108607.60991557765 123015.7851950879 101223.05974642668 126632.89572323453 104317.08018670602 119567.9045690705 102212.03892629921 0.5519177308520278 1.1423423103246078 0.9774827289477598 1.0625716017062337 1.2035351851633582 0.9903242397836751 1.2389234874234742 1.0205948465808874 1.1698025577523785 1.0 16.641205606880302 4.741952196493332 24.98329237638634 1.0900152102791585 0.5519175276835755 0.7637842772292769 0.08968921067815716 137.81278684540297 1015120.5074647013 0.01942703741162282 0.14084740391191017 55201.66745548874 -4.741952196493332 -0.538097682595583 KRS(ph)PPLGGAPS(ph)PSSLSLPPSTGFPLQASGVPSPYLSSLASSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSR 42 2 I3NI13;I3L270;Q8NBZ0 I3NI13 INO80E INO80 complex subunit E 2 KRS(0.746)PPLGGAPS(0.305)PS(0.305)S(0.305)LS(0.305)LPPS(0.017)T(0.017)GFPLQASGVPSPYLSSLASSR 78.172 0.000543 247220000.0 221490.0 223620.0 204190.0 240540.0 215480.0 292570.0 263880.0 265580.0 341820.0 314990.0 True False 220297.52244985264 231063.05651885527 232938.17714870337 270992.3393368784 242920.10074997772 272345.3245357001 251115.11628050733 285398.9281879143 257583.04115333513 294887.0685234936 0.7470572499258359 0.7835645614295444 0.7899233368049343 0.9189698981842213 0.8237733243654404 0.9235580451165236 0.8515636766910348 0.967824495041147 0.8734972423275779 1.0 18.169803032726325 7.917945999857328 0.16188282003082444 1.0051822829672814 3.433766309435986e-20 0.707077714640026 0.04302037486719119 29.845778628008848 0.31816711417132804 0.11381883306332788 7.146197587147541 82783922.38469061 -7.917945999857328 -1.0051822829672814 KRS(ph)PS(ph)PSPTPEAK ddPTM_BT-474_Trastuzumab_2h_R1 7 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 KRS(0.997)PS(0.501)PS(0.501)PTPEAK;KRS(0.777)PS(0.777)PS(0.445)PT(0.002)PEAK;KRS(0.949)PS(0.901)PS(0.148)PT(0.002)PEAK;KRS(0.978)PS(0.905)PS(0.117)PTPEAK;KRS(0.982)PS(0.962)PS(0.056)PTPEAK;KRS(0.996)PS(0.91)PS(0.094)PTPEAK;KRS(0.969)PS(0.906)PS(0.125)PTPEAK 189.42 2.8296e-06 14586498000.0 8053919.0 5956874.0 4310910.0 5010931.0 5224558.0 7673103.0 7911174.0 7006288.0 11452740.0 7329864.0 True False 8010557.594978519 6155144.950083623 4917848.6568985665 5645314.350817674 5889874.492918605 7142679.450151607 7528480.290000495 7529132.7877695775 8630365.68585352 6862065.804107713 1.1673682275362771 0.8969813356204018 0.7166717424882001 0.8226843798901379 0.858323814002608 1.0408934647458374 1.09711572359068 1.0972108112490777 1.257692061286746 1.0 22.710211530079064 2.562843799155048 2.8726755344559955 1.1169205902709605 0.878804957763041 0.4230683985578584 0.12180671024749162 0.2580021227600207 4.162204653469324 0.044859415299493 0.04046901441703532 365.463323336654 -2.562843799155048 -0.23811563250791945 KRS(ph)PSPS(ph)PTPEAK ddPTM_BT-474_Trastuzumab_2h_R1 6 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 KRS(0.993)PS(0.42)PS(0.587)PTPEAK;KRS(0.965)PS(0.105)PS(0.931)PTPEAK;KRS(0.941)PS(0.38)PS(0.656)PT(0.022)PEAK;KRS(0.668)PS(0.453)PS(0.878)PT(0.001)PEAK;KRS(0.982)PS(0.02)PS(0.882)PT(0.116)PEAK;KRS(0.96)PS(0.041)PS(0.987)PT(0.012)PEAK 172.24 1.2725e-05 18579060000.0 18265580.0 13806410.0 9717290.0 11058780.0 11498260.0 17481190.0 16694250.0 15222450.0 25099320.0 16265040.0 True False 18167240.146776736 14265948.010698915 11085399.967801189 12458820.41411773 12962495.255473537 16272756.481594948 15886685.34927189 16358426.51703486 18913928.899656907 15226991.221998665 1.193094543886664 0.9368855476903857 0.72800987445149 0.8182063174843289 0.8512840827507948 1.0686783911772044 1.0433239973449353 1.0743045870678374 1.2421317267413714 1.0 23.86012756480702 2.690158989449692 6.4565168122757415 1.0863757019774873 0.8926045956858099 0.3336364279352505 0.12671535117234944 0.2662802616827553 27.70347835474644 0.042890045078758036 0.040694128048399135 489.95815372214565 -2.690158989449692 -0.1937711062916775 KRS(ph)PSPSPTPEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 KRS(0.839)PS(0.151)PS(0.01)PTPEAK 142.91 2.1166e-05 218510000.0 278390.0 331070.0 298470.0 228140.0 294510.0 307410.0 432630.0 337000.0 512900.0 326350.0 True False 276891.1791720364 342089.4648139587 340491.9816522529 257022.50060827888 332014.10280246794 286159.47026530275 411702.03409290616 362148.65125132597 386502.6675078861 305522.0635977082 0.9062886519928358 1.1196882502875474 1.1144595504584929 0.8412567576353818 1.0867107235817928 0.9366245661462249 1.3475361787128046 1.1853436933058297 1.2650564838315832 1.0 18.22091704398528 2.2487816828185903 24.999856458826418 1.2164954674629822 1.0080545725543764 0.39868310566097753 0.11858397821397194 188.08945251442668 460050.68993302074 0.039063593923597956 0.032339194300330346 177.3297830815227 -2.2487816828185903 -0.20844089490860584 KRS(ph)SS(ph)EDAESLAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KRSSSEDAESLAPR 14 2 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 2 KRS(0.526)S(0.507)S(0.952)EDAES(0.015)LAPR;KRS(0.986)S(0.178)S(0.834)EDAES(0.002)LAPR 160.02 2.3714e-05 1411990000.0 2862200.0 3100000.0 2177780.0 2823200.0 2946600.0 3605800.0 3023400.0 2844530.0 4088400.0 2892000.0 True False 2846790.233220312 3203181.626010424 2484392.494396906 3180616.8305307818 3321832.0441334895 3356539.5331401997 2877146.5914904014 3056803.2728306665 3080868.601753247 2707430.0840342343 1.0514732217861829 1.1831077910006416 0.9176201849301353 1.174773394625013 1.2269317917838007 1.2397511399957384 1.0626854626669728 1.129042367836825 1.1379309921689895 1.0 21.36849265185973 6.207827178239879 12.675792349011894 1.1191718395691224 0.6935540584690483 0.0 0.09817283605792983 0.0 0.0 0.021189969063617385 0.0 1613716.2719373219 -6.207827178239879 -0.4256177811000741 KRS(ph)VSHGSNHTQKPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSVSHGSNHTQKPDEQR 18 3 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 KRS(0.466)VS(0.466)HGS(0.066)NHT(0.001)QKPDEQR 42.633 0.084342 24515000.0 7896.0 16207.0 19811.0 23830.0 19702.0 25598.0 25533.0 11461.0 28319.0 21274.0 True False 7853.48881332807 16746.440197661617 22600.2165997011 26846.875556655068 22210.932917096972 23828.470511210493 24297.871244467944 12316.278017778768 21340.16190515857 19916.275106412253 0.39432518236301917 0.8408419801486838 1.1347612180966873 1.3479867803197514 1.1152152095923766 1.196432083002241 1.2200007840143257 0.6184026858422644 1.0714936297645277 1.0 14.28166022836066 4.63734646860285 2.668784246240488 1.0703149624860793 0.3337098731084283 0.5727728457089403 0.18278763108470178 0.3063018226135815 3.2829984424798226 0.05199199311868883 0.4469188052534915 43385.685984136384 -4.63734646860285 -0.736605089377651 KRS(ph)WGHES(ph)PEER ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSWGHESPEER 12 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 KRS(1)WGHES(1)PEER 71.781 0.023417 442850000.0 267780.0 260260.0 211500.0 268180.0 271720.0 345750.0 327780.0 295690.0 396850.0 314660.0 True False 266338.3022331547 268922.59676950786 241277.3616090446 302131.56050288497 306321.93138938106 321849.1163079544 311924.0291588021 317755.8892833961 299051.6350175559 294578.1294060206 0.9041346781928179 0.9129075444662376 0.8190606753310226 1.0256415203399345 1.0398665101412665 1.0925764141313623 1.0588838682211652 1.0786811971550994 1.0151861430465172 1.0 18.168290797652602 3.617184681358089 5.235659683708938 1.0542131890630781 0.8829644428376856 0.822610152073746 0.035222721862461226 0.08203062374214186 3.169163454166981 0.009248671774844166 0.014498484147144547 4141.757633595661 -3.617184681358089 -0.17124874622539255 KRS(ph)YS(ph)PDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRSYSPDGK 9 2 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 2 KRS(0.989)Y(0.047)S(0.964)PDGK;KRS(0.991)Y(0.013)S(0.996)PDGK 93.478 0.046097000000000006 2424050000.0 4085900.0 2907380.0 1289660.0 2344330.0 2539960.0 3910800.0 3708900.0 3768200.0 6273500.0 3663300.0 True False 4063901.968386166 3004150.385751679 1471232.9180743298 2641121.937630432 2863408.850477596 3640455.601032967 3529486.3376261005 4049402.2185318894 4727479.985593148 3429505.0576910833 1.1849820601000047 0.8759719945636195 0.4289927827267409 0.7701175222667755 0.8349335552242596 1.0615104919786609 1.0291532679652409 1.1807541176971328 1.378472959236843 1.0 21.709568952620913 2.4837412950798603 1.4978769647938202 1.1835956593801211 0.7917956682993674 0.39286658092053417 0.19554079640526373 0.4018151474688426 1.8263385614319336 0.09806926796432958 0.07480112505514162 304.6079929439741 -2.4837412950798603 -0.3917999910807537 KRSEGFS(ph)MDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KRSEGFSMDR 10 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 KRS(0.167)EGFS(0.833)MDR;KRS(0.102)EGFS(0.898)MDR 113.52 0.0011630999999999998 13871400000.0 8292700.0 6980500.0 6908700.0 6950400.0 6364500.0 7643500.0 8175800.0 8313300.0 11366000.0 8783900.0 True False 8248053.02460558 7212841.7226986345 7881384.908503107 7830319.927359427 7174981.34965301 7115122.83586363 7780305.319410998 8933680.660082044 8565001.59659707 8223303.981724866 1.003009622766678 0.8771221079420338 0.9584207182439533 0.9522109294221897 0.8725180737083774 0.8652389418749432 0.9461288718867296 1.0863857982066443 1.0415523511755833 1.0 22.97128672969645 1.8632665258314138 5.345148951478556 1.0484505749096256 0.9193339504941787 0.5890137067506918 0.04525439396646439 0.14327238073415324 5.446355962151795 0.020363490658523706 0.012008361474154268 72.99053145604236 -1.8632665258314138 -0.1291166244154469 KRSIS(ph)ESSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSISESSR 9 2 Q9H307 Q9H307 PNN Pinin 1 KRS(0.153)IS(0.685)ES(0.061)S(0.101)R 80.979 0.017783 164510000.0 94435.0 177200.0 154830.0 170840.0 179630.0 186610.0 198510.0 159430.0 246330.0 186530.0 True False 93926.57245271478 183097.9948803378 176628.71819351468 192468.32648338037 202504.81574957524 173710.0899326895 188907.3129181581 171327.47616913612 185625.27215289054 174625.49570363242 0.5378743354413911 1.0485181109583481 1.0114715350230532 1.1021776958046843 1.1596520595896176 0.9947578916397379 1.0817854068615744 0.9811137570650418 1.0629906669981715 1.0 17.41390468540817 4.738576432349756 10.791009027316438 1.0491902853508162 0.5371021836922276 0.8946597641734674 0.052632745178196085 0.019718912334656415 112.94330158957986 0.012686731532660802 0.07332808484265413 54774.24907702323 -4.738576432349756 -0.5120881016585885 KRSPPLGGAPS(ph)PSSLSLPPSTGFPLQASGVPSPYLSSLASSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSR 42 2 I3NI13;I3L270;Q8NBZ0 I3NI13 INO80E INO80 complex subunit E 1 KRS(0.326)PPLGGAPS(0.503)PS(0.079)S(0.079)LS(0.013)LPPSTGFPLQASGVPSPYLSSLASSR 168.84 3.1257000000000003e-20 225940000.0 155540.0 140930.0 146230.0 160330.0 132360.0 198670.0 175770.0 170730.0 202940.0 195330.0 True False 154702.58992211864 145620.76985601606 166817.91294605486 180627.76156099487 149215.26144081602 184936.41051887572 167267.33359339385 183470.7395493737 152928.15625667843 182863.87216957362 0.8459986551015369 0.7963342793101241 0.9122518897082142 0.9877717201213745 0.8159909317814592 1.0113337770042417 0.9147095684284933 1.0033186838526384 0.8362950780942933 1.0 17.48041054903034 4.127125495006499 5.007617950760154 0.9397010668141837 0.8220808022836086 0.3301446796761901 0.06567044137914389 0.20518328959701748 8.063807053128551 0.015335256218125926 0.03489905953428146 13400.638602650131 -4.127125495006499 -0.11762026453057517 KRSPS(ph)PSPTPEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 KRS(0.372)PS(0.603)PS(0.023)PT(0.001)PEAK 89.484 0.0038759 318510000.0 200030.0 233260.0 188140.0 161180.0 200670.0 246840.0 268220.0 244930.0 345870.0 220150.0 True False 198953.0607054222 241023.91809135256 214628.47665780436 181585.37147384236 226224.13503572484 229776.53179885898 255245.17390009787 263207.9203293393 260634.97292055466 206099.83852010235 0.9653237097806698 1.1694522413118913 1.0413811005333231 0.8810553796534444 1.0976434365991006 1.1148797274600837 1.2384540217638358 1.277089405888432 1.264605420324641 1.0 17.65298384895814 2.5465973637525186 2.2355528232664796 1.2242897086177222 1.02861776886787 0.35031568162878457 0.10257106589920564 0.2938884267436675 2.931370753721316 0.03861565370888552 0.033707095670506046 352.04433790897474 -2.5465973637525186 -0.1956719397498523 KRSVS(ph)HGSNHTQKPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRSVSHGSNHTQKPDEQR 18 3 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 KRS(0.436)VS(0.56)HGS(0.004)NHTQKPDEQR 76.733 0.006 21549000.0 6827.1 8274.1 12945.0 17078.0 14928.0 14591.0 17590.0 11093.0 17960.0 16678.0 True False 6790.343652162113 8549.498416700932 14767.54348004294 19240.073048953203 16828.992314811887 13582.358513519493 16739.104499674573 11920.815989112642 13533.998651670183 15613.595761245833 0.4348994143307 0.5475675524994349 0.9458131045442548 1.232264069286882 1.0778421942101744 0.8699058641720423 1.0720851721563294 0.7634894723418574 0.8668085723893677 1.0 13.930515203190023 4.272656178835768 4.130563331017562 0.9748319803753314 0.4654125249654342 0.7121935830524571 0.124818552814684 0.1161098054507222 4.253630038364646 0.034395774195572625 0.09790485540091849 18735.107045507702 -4.272656178835768 -0.5094194554098972 down KRT(ph)EEPDRDER ddPTM_BT-474_Trastuzumab_2h_R1 9 KRTEEPDRDER 11 3 O95232;J3KPP4;H0YA81 O95232 LUC7L3 Luc7-like protein 3 1 KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER 203.27 3.8244e-08 26752211000.0 8194498.0 6015621.0 5378290.0 5667145.0 5110045.0 6895857.0 6495610.0 6883427.0 10474433.0 7542378.0 True False 8150379.733262324 6215847.308465307 6135506.483065296 6384604.975934539 5760778.941140327 6419162.636691324 6181392.528660095 7397103.276074063 7893149.337361328 7061016.978685315 1.1542784499549295 0.880304823969228 0.8689267426471563 0.9042047335684616 0.8158568317467665 0.9090988813748049 0.8754252464368105 1.047597435100818 1.1178487973032671 1.0 22.751444555149703 1.6584914525762426 5.214703324342038 1.0659570897906752 0.9080134064320228 0.33628376544391314 0.08929792478714839 0.15352943448914289 9.199708506255714 0.047043375803389104 0.02271517585202566 45.55032212409464 -1.6584914525762426 -0.1579436833586524 KRT(ph)SESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRTSESR 7 2 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 KRT(0.853)S(0.144)ES(0.003)R 70.908 0.089641 135480000.0 281750.0 230440.0 186130.0 204380.0 194270.0 245630.0 238180.0 235940.0 330530.0 249760.0 True False 280233.08930536784 238110.05609607854 212335.48612903783 230254.48704444632 219009.13297149685 228650.17625082546 226658.32346404172 253547.04087904398 249075.31037508603 233820.10296970588 1.198498699411125 1.0183472382052987 0.9081147575944245 0.9847506015095651 0.9366565585674729 0.9778892975701484 0.9693705570449088 1.0843680148062118 1.0652433525245544 1.0 17.835039447111793 -0.043535698268204026 7.29957211353468 1.0000000222687377 1.0116792097560172 0.00105197355383424 0.07944160639331045 5314933.084677563 728115.6972348413 0.07841175629787416 0.019017644294062653 0.904616076778133 0.043535698268204026 0.011679187487279474 KRTEEPDRDER ddPTM_BT-474_Trastuzumab_2h_R1 7 KRTEEPDRDER 11 3 O95232;J3KPP4;H0YA81 O95232 LUC7L3 Luc7-like protein 3 0 ;;;;;; 184.34 2.1678e-06 958854000.0 444134.8 692661.0 579659.2 600106.0 628574.7 649782.0 728576.0 616120.8 988070.0 779431.0 False True 441743.6275848156 715715.8026625835 661270.1768719133 676079.3580697456 708619.9621908612 604864.0997623006 693331.995449397 662098.8626940298 744573.3879596747 729687.0462755489 0.6053877889700151 0.9808531017724968 0.9062380649994441 0.9265333152350362 0.9711286034304463 0.8289363266754336 0.9501772012923699 0.9073737379243594 1.020400994865002 1.0 19.476918317069 4.743386265032182 24.989360302944277 0.9353370756726503 0.6053876536900379 0.7849984881553592 0.05293152981111697 211.60018277004127 1095723.6158830903 0.011748139376042917 0.09643120114867013 55384.24822156129 -4.743386265032182 -0.32994942198261246 KRTS(ph)ESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KRTSESR 7 2 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 KRT(0.349)S(0.649)ES(0.003)R 65.157 0.056188 100220000.0 227190.0 185040.0 146110.0 171720.0 172610.0 197110.0 196560.0 190750.0 279080.0 231360.0 True False 225966.8342831818 191198.9445409579 166681.01798911364 193459.73439315177 194590.86036037482 183484.24964703104 187051.64186788164 204984.73360887342 210304.47348040706 216594.4067227384 1.0432717894347152 0.8827510711562874 0.7695536579690228 0.8931889669745663 0.8984112900453138 0.8471329081083264 0.8636032882757017 0.946399016994347 0.9709598537769119 1.0 17.724636462085 1.5371079784758668 2.853761278958161 0.9837285185293638 0.8802610067306418 0.28666386624933093 0.06424930358905481 0.30169152273090327 5.333061721017428 0.04698953094932964 0.017355000702957736 34.44355570030032 -1.5371079784758668 -0.10346751179872204 KRVPDHHPC ddPTM_BT-474_Trastuzumab_2h_R1 1 KRVPDHHPC 9 2 P78371;P78371-2 P78371 CCT2 T-complex protein 1 subunit beta 0 80.067 0.014152 64313000.0 126000.0 167810.0 158780.0 124540.0 96373.0 134080.0 149360.0 75213.0 333050.0 141260.0 False True 125321.62999991598 173395.4544067128 181134.8438594991 140306.75123062625 108645.53030247618 124811.36519037052 142134.88618939143 80825.77598387534 250974.2901413559 132244.66586122944 0.9476497912696296 1.3111716323489735 1.3696948960464872 1.0609634068557194 0.8215494333547113 0.9437913005983997 1.0747872911451888 0.6111836379751576 1.8978027469532497 1.0 17.012850006297846 3.4954722066298065 22.757756963391753 1.0005744889645212 1.2189483580336826 0.024477901970476168 0.33200278857524484 612.7258266597188 759862.4300166789 0.08588495303486288 0.13002674045180537 3129.4801890635094 -3.4954722066298065 0.21837386906916145 KRVS(ph)VELTNSLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KRVSVELTNSLFK 13 2 P14923 P14923 JUP Junction plakoglobin 1 KRVS(0.999)VELT(0.001)NSLFK;KRVS(1)VELTNSLFK 135.09 6.932100000000001e-05 1428790000.0 215930.0 247740.0 240190.0 233770.0 262560.0 404190.0 331650.0 314730.0 516480.0 351650.0 True False 214767.45687207812 255985.8761380073 274006.66423109395 263365.25803102186 295995.45968495455 376249.2966609171 315606.8224739666 338216.75076655747 389200.4244774285 329207.3959372883 0.6523773752427781 0.7775823972884582 0.8323223220759303 0.7999979990765186 0.8991154613711644 1.1428944224952649 0.9586869139904969 1.027366805668562 1.1822347531693014 1.0 18.328637221989155 3.3082628915552266 0.8581120949515871 1.0663611969511648 0.7068227070834848 0.7691799867968573 0.07623303362132312 0.31099228286409986 0.49191228683759186 0.0367633048375412 0.06923520190860631 2033.5876303915968 -3.3082628915552266 -0.35953848986768 KS(ph)ASPEVSEGHENQHGQESEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSASPEVSEGHENQHGQESEAK 22 1 O60930 O60930 RNASEH1 Ribonuclease H1 1 KS(0.629)AS(0.371)PEVSEGHENQHGQESEAK 162.15 7.786000000000001e-12 309920000.0 126560.0 135220.0 115640.0 127460.0 123340.0 182200.0 150970.0 52409.0 204930.0 151770.0 True False 125878.61502213796 139720.715957784 131921.10683910124 143596.42293123162 139046.6179065447 169604.94285266614 143667.00433859424 56320.02570750963 154427.74742131247 142083.90866316564 0.8859456092283813 0.9833676260203118 0.9284732386680249 1.0106452186056596 0.9786232601200369 1.1936956439926203 1.011141977232493 0.39638567264521096 1.0868771057488995 1.0 17.11638364966231 KS(ph)DNHSPAVVTTTVSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSDNHSPAVVTTTVSSK 17 1 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 KS(1)DNHSPAVVTTTVSSK;KS(1)DNHSPAVVTTTVSSK 209.71 2.4666e-12 853210000.0 856840.0 712490.0 638810.0 570010.0 664870.0 917660.0 867470.0 861010.0 1165530.0 893220.0 True False 852226.8686438741 736204.7989406995 728748.8953639424 642173.2075555581 749537.2535067638 854224.3241392851 825507.162042791 925262.9383201908 878300.7488018464 836213.9348758846 1.019149326625807 0.880402452334128 0.8714861890840258 0.7679532482927026 0.896346284420642 1.021538016184906 0.987196132010545 1.1064906954193765 1.0503301992117706 1.0 19.673512559446255 2.704866112998422 3.2681444730072875 1.0452158280510804 0.8775005567893026 0.5619726561550652 0.06428621980848005 0.17999690599935247 3.954546239022656 0.022508527752358735 0.021974299361460035 506.8344341185496 -2.704866112998422 -0.16771527126177777 KS(ph)ESDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 4 KSESDKDVK 9 2 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 KS(0.996)ES(0.004)DKDVK;KS(0.654)ES(0.346)DKDVK;KS(0.5)ES(0.5)DKDVK;KS(1)ESDKDVK 132.79 0.00020414 2185830000.0 3798370.0 1958700.0 1578620.0 1467910.0 1449720.0 1721410.0 2587120.0 2571040.0 5614250.0 2726460.0 True False 3777919.9979585796 2023894.1454408455 1800875.9743889838 1653747.2554917987 1634333.2488363534 1602412.978463273 2461971.12184185 2762904.0602765875 4230693.314595731 2552454.9885601588 1.4801122898898627 0.7929206017390047 0.7055466139306373 0.6479045714434629 0.6402985581180735 0.627792844788693 0.964550259603461 1.0824496700861093 1.6574996752370812 1.0 21.28345408934846 1.6351705316249505 2.65832667948672 1.332053281253972 0.8009338464518033 0.3222242395813192 0.2823560803640342 0.24922441803981216 4.051322296945891 0.18755601393955462 0.07586692891605472 43.1688551923401 -1.6351705316249505 -0.5311194348021687 KS(ph)ESPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSESPFR 7 1 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 KS(0.789)ES(0.211)PFR 63.076 0.04519 0.0 203130.0 194910.0 181080.0 156850.0 137730.0 185770.0 171250.0 180560.0 244980.0 195250.0 True False 202036.37064986475 201397.46152441672 206574.49002442436 176707.19391780716 155269.09911033243 172928.15715554226 162965.98326147083 194034.30406510225 184607.9615638172 182788.97783806498 1.1052984323204174 1.1018030950577187 1.1301255276312736 0.9667278410755941 0.8494445395273628 0.9460535268638651 0.8915525716536608 1.0615208113751784 1.009951276861801 1.0 17.47981955305059 3.732005511057014 22.471764657754143 0.960091537967824 1.1113484351581593 0.601254966701215 0.05659357537907621 92.86041610750299 318340.0081820235 0.01652766937049043 0.02637098441001915 5395.1746877449605 -3.732005511057014 0.1512568971903353 KS(ph)GVSSDNEDDDDEEDGNYLHPSLFASK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSGVSSDNEDDDDEEDGNYLHPSLFASK 28 1 Q12872-2;Q12872 Q12872-2 SFSWAP Splicing factor, suppressor of white-apricot homolog 1 KS(0.333)GVS(0.333)S(0.333)DNEDDDDEEDGNYLHPSLFASK 62.302 0.012901 73764000.0 37244.0 30079.0 29646.0 31862.0 33877.0 46974.0 44741.0 42010.0 57579.0 40778.0 True False 37043.482442197404 31080.161331860545 33819.899112348634 35895.72593311556 38191.03514528954 43726.797944901984 42576.70690278229 45144.99952245757 43389.42696907111 38175.51312819775 0.9703466805488937 0.8141386659948695 0.8859055541382649 0.9402814262790284 1.000406596161253 1.1454148055079805 1.1152883986078936 1.1825643147442573 1.136577439663075 1.0 15.220359928386403 3.04891716428579 1.8005916009715177 1.1337229798884405 0.8860891968462543 0.7416056442020049 0.0590144550210486 0.14815577409916064 0.9796983514458277 0.01914700413810659 0.023428937729971223 1119.224386410241 -3.04891716428579 -0.2476337830421862 KS(ph)KSPT(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSKSPTLR 8 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 KS(0.702)KS(0.47)PT(0.828)LR;KS(0.917)KS(0.241)PT(0.842)LR;KS(0.857)KS(0.146)PT(0.998)LR 107.09 0.0044913 2259230000.0 4357400.0 2849710.0 1966310.0 2257720.0 2359800.0 3325270.0 3723500.0 3769100.0 6664100.0 3549400.0 True False 4333940.242552649 2944560.874663924 2243149.3565270947 2543547.120510754 2660306.542369577 3095401.9117436106 3543380.079848679 4050369.3811019966 5021821.8493649885 3322874.2532057725 1.3042745262994655 0.8861487526418228 0.6750629682609857 0.765465957087255 0.8006040372436672 0.9315434999555864 1.0663599672573139 1.218935497542336 1.5112885612569122 1.0 21.664000267798293 1.9865800129324303 2.000159662910238 1.274478969745201 0.8697599624179784 0.39257056828692816 0.19434228835369727 0.31329933768052914 2.3305852121589026 0.11458516209951067 0.05877218248266156 96.95718834592861 -1.9865800129324303 -0.40471900732722266 KS(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSLPEEDVAEIQHAEEFLIKPESK 24 2 O60832;O60832-2;C9IYT0;H7C0M1;H7C2Q9 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 KS(1)LPEEDVAEIQHAEEFLIKPESK;KS(1)LPEEDVAEIQHAEEFLIKPESK 173.98 1.6572e-12 97608000.0 91979.0 64707.0 58613.0 53995.0 63212.0 91763.0 85347.0 90328.0 143333.0 84889.0 True False 91483.7952838276 66860.73337879237 66865.20092667112 60830.76146376794 71261.67351312231 85419.6397968673 81218.4395527986 97068.7340362902 108010.5027137996 79471.31134287074 1.15115497325985 0.8413191156533036 0.8413753315103628 0.7654430314018592 0.896696836996576 1.0748487517505922 1.021984388836747 1.2214311352872635 1.3591131301181059 1.0 16.278146529845106 2.263103152502333 1.4566493963478353 1.206166372609597 0.8881834995232867 0.4560821216970047 0.13191948156022765 0.3344863741680042 1.4005051950620655 0.07471354317549167 0.045323342492538866 183.27496806434362 -2.263103152502333 -0.31798287308631035 KS(ph)LSDSESDDS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 KS(0.961)LS(0.04)DS(0.156)ES(0.001)DDS(0.843)K 193.3 1.9916e-06 453610000.0 2414700.0 1467600.0 1106300.0 1151000.0 1212300.0 2055500.0 1996200.0 2109400.0 3783800.0 1901200.0 True False 2401699.523498389 1516448.1788170666 1262057.423868019 1296716.481985311 1366679.219134945 1913408.12312654 1899636.1797754655 2266814.1393161644 2851333.190322362 1779863.7883007904 1.3493726538429416 0.852002377252024 0.7090752855154644 0.7285481566110557 0.767856073098545 1.0750306488078183 1.0672930098707274 1.2735885488632017 1.601995168992391 1.0 20.763335406323584 2.09376302862429 1.6355492226772588 1.3207621966028145 0.8704101184952009 0.36966953142448156 0.22252006936647023 0.3730760105746767 1.899555870689637 0.13420542693237417 0.07140440758320293 124.09749888424278 -2.09376302862429 -0.4503520781076136 KS(ph)MSEDGGLQESNPCADDFVSASTADVSHTNLGTIR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSMSEDGGLQESNPCADDFVSASTADVSHTNLGTIR 36 1 H7C0I1;B8ZZW5;Q8NBF6-2;Q8NBF6;A0A1W2PRP5 H7C0I1 AVL9 Late secretory pathway protein AVL9 homolog 1 KS(0.734)MS(0.263)EDGGLQES(0.003)NPCADDFVSASTADVSHTNLGTIR;KS(0.713)MS(0.278)EDGGLQES(0.01)NPCADDFVSASTADVSHTNLGTIR 140.06 2.8131e-13 843680000.0 224393.0 209461.0 159952.0 163853.0 175961.0 209104.0 189538.0 159994.0 232667.0 184775.0 True False 223184.89302040625 216432.78276315183 182471.85127229276 184596.77299977344 198368.59034744182 194649.13265787024 180369.32283452633 171933.56471307017 175329.33542807048 172982.50130616358 1.2902165903208263 1.2511831030821154 1.0548572826411724 1.0671413097042322 1.1467552431580759 1.1252533128386129 1.0427027096532078 0.9939361693513907 1.0135668874261057 1.0 17.400266578451024 7.999999999999999 0.3248500881789139 1.008351420211717 3.9469096263545205 0.7543624467568082 0.048803316014922424 29.820993630590714 0.4265805022439736 0.049159511492 52.31656096511861 99999999.99999979 -7.999999999999999 2.9385582061428037 KS(ph)PEIHR ddPTM_BT-474_Trastuzumab_2h_R1 6 KSPEIHR 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR 107.83 0.004525899999999999 5691440000.0 5288660.0 4776620.0 4199980.0 4049990.0 4542210.0 4778540.0 4828540.0 4760500.0 5946730.0 4904570.0 True False 5260186.442185369 4935606.909172235 4791300.6771194115 4562718.3187451735 5120633.51971206 4448210.777273214 4594965.073385938 5115752.683329189 4481238.073599475 4591556.1435863655 1.1456217190185005 1.0749311899553817 1.0435025789267667 0.9937193788033118 1.1152283364463977 0.96878065696455 1.0007424345239324 1.114165333788859 0.9759737077067029 1.0 22.130551755676525 4.669509722073283 1.8415933258228823 1.032914589234185 1.172048903559829 0.35482632818901894 0.04944651136455081 0.8399861708921174 3.2849209002181188 0.012649837977107514 0.19240960756117664 46720.74099136466 -4.669509722073283 0.13913431432564383 KS(ph)PEIHRR ddPTM_BT-474_Trastuzumab_2h_R1 4 KSPEIHRR 8 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 KS(1)PEIHRR;KS(1)PEIHRR;KS(1)PEIHRR;KS(1)PEIHRR 87.476 0.0079817 465594000.0 482233.0 482942.0 370131.0 389704.0 427895.0 456333.0 498257.0 428069.0 750225.0 519682.0 True False 479636.7111091227 499016.43252539635 422242.2275636753 439040.48644274875 482384.8919176337 424787.7738023365 474154.4053834203 460013.68247033824 565342.1012499587 486515.44983785605 0.9858612121546688 1.0256949346453572 0.8678906861116097 0.9024183848407495 0.9915099141834057 0.873122886321304 0.97459269904264 0.9455273879249874 1.162022915075716 1.0 18.892126094552225 1.2628485673452876 24.757210108877732 1.081011396908631 0.9450209337072114 0.4395775563471419 0.06105022033712655 150.4929128386819 153401.1022322554 0.03896251973738522 0.0142124994102516 18.316756303095854 -1.2628485673452876 -0.1359904632014196 KS(ph)PENTEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSPENTEGK 9 1 Q15651;A0A087WZE9;Q15651-2 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 KS(1)PENTEGK;KS(1)PENTEGK;KS(1)PENTEGK 147.33 5.6758e-05 647360000.0 651280.0 453310.0 372092.0 318770.0 387330.0 420590.0 544880.0 597710.0 991970.0 629410.0 True False 647773.5808440099 468398.1493183187 424479.3193183574 359126.2493157753 436654.1796152258 391515.60326236516 518522.07275626407 642314.1553098814 747512.2852169971 589240.5149349888 1.0993364584162701 0.7949184372870173 0.720383796700046 0.6094731102381815 0.7410457505003744 0.664441078539145 0.879983741127293 1.0900712680640234 1.2686030004224516 1.0 19.168497104889106 1.7978572454032762 2.8238419413186 1.1446020963160253 0.7623345308171651 0.5592217052316899 0.13748893378981136 0.17827246057383314 2.7001192780736205 0.07990591459921853 0.03875634155724663 62.78519470638101 -1.7978572454032762 -0.3822675654988602 KS(ph)PESEILSLHLLVEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 KSPESEILSLHLLVEELR 18 1 A0A0A6YYJ5;O94854-2;O94854 A0A0A6YYJ5 MACF1;KIAA0754 Uncharacterized protein KIAA0754 1 KS(0.997)PES(0.001)EILS(0.002)LHLLVEELR;KS(0.998)PES(0.002)EILSLHLLVEELR;KS(0.993)PES(0.007)EILSLHLLVEELR;KS(0.998)PES(0.002)EILSLHLLVEELR 232.87 5.1863e-22 174823000.0 179839.0 209612.0 203664.0 195013.0 202182.0 229148.0 221437.0 212148.0 258864.0 216113.0 True False 178870.76680599124 216588.8087068703 232338.12092077776 219701.62580486646 227928.67927339877 213307.53811637074 210725.24633851284 227979.56102571625 195070.4357998856 202320.4833163521 0.8840961818300205 1.070523385258071 1.1483667748929283 1.0859089608902173 1.1265724336818888 1.0543052024190702 1.0415418294993835 1.1268239245417535 0.9641655288795935 1.0 17.626282862958625 4.736298462142529 6.070622476528058 1.07823792088238 0.8792637762272092 0.49311232572880603 0.05543841546929142 0.09345813011346764 17.352878917310974 0.012463220870659509 0.07715103797533626 54487.69824513952 -4.736298462142529 -0.19897414465517083 KS(ph)PGDEDDKDCK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPGDEDDKDCK 12 2 Q9Y3E1;H3BPM9 Q9Y3E1 HDGFRP3 Hepatoma-derived growth factor-related protein 3 1 KS(1)PGDEDDKDCK;KS(1)PGDEDDKDCK 161.14 3.4534e-05 394730000.0 886170.0 441340.0 309300.0 259510.0 281360.0 495630.0 519850.0 547710.0 1153760.0 453730.0 True False 881398.9591827433 456029.73510433594 352846.75151620555 292363.9393918401 317189.52824862447 461368.264687525 494702.8694801498 588582.9014150264 869431.3075919263 424772.5629422033 2.0749903267708723 1.0735856665167558 0.8306721815368655 0.6882834836759939 0.7467279102294158 1.0861536382949035 1.164629998824716 1.3856424655542359 2.0468160692154345 1.0 18.69633105652619 1.6831970503720104 2.9985602479288254 1.5670655638929003 1.0481877958774566 0.13667904132964814 0.43483089934202196 0.3608860099621839 7.41290038575091 0.26795209453001356 0.11822148011626556 48.21665191256683 -1.6831970503720104 -0.5188777680154437 KS(ph)PGDEDDKDCKEEENK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPGDEDDKDCKEEENK 17 3 Q9Y3E1;H3BPM9 Q9Y3E1 HDGFRP3 Hepatoma-derived growth factor-related protein 3 1 KS(1)PGDEDDKDCKEEENK;KS(1)PGDEDDKDCKEEENK 167.73 1.2077e-08 457910000.0 417550.0 171557.0 109683.0 103519.0 101179.0 240340.0 202163.0 227093.0 653040.0 163044.0 True False 415301.9571941666 177267.17103660345 125125.41301827338 116624.49478595775 114063.54591508237 223725.8614995048 192383.60335234302 244039.83281488807 492107.0422876776 152638.39233100874 2.720822401572146 1.1613537611964964 0.819750595557432 0.7640574104911173 0.7472795289125315 1.4657246979798968 1.2603880348473768 1.598810293321669 3.2240056696909094 1.0 17.219758355738946 1.4818486968952724 5.48826429815457 2.207154124478874 1.2367579079737936 0.16225513029488248 0.7357039165342303 0.22264259684879767 15.201921526462705 0.4281054279682606 0.18084124198340185 30.328343961796797 -1.4818486968952724 -0.9703962165050803 KS(ph)PGSTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPGSTSR 8 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 KS(0.635)PGS(0.265)T(0.095)S(0.004)R 53.567 0.083159 141370000.0 76193.0 55541.0 51656.0 56383.0 52384.0 52760.0 67841.0 65093.0 87294.0 73496.0 True False 75782.78535383818 57389.64860975649 58928.715797999124 63521.08201892079 59054.79189570639 49112.82538368097 64559.27165221276 69950.57019555665 65781.5633796713 68805.42235690873 1.1014071676028139 0.8340861322246358 0.8564545319164385 0.9231987806051546 0.8582868889224501 0.7137929497608783 0.9382875570086575 1.0166432789658317 0.9560520250634895 1.0 16.07023464359263 2.0040349282937386 24.998862932490095 0.9889271406272689 0.8744077610120298 0.22357711513159428 0.09158930736787882 160.2747449924709 992993.7459569884 0.034144028141648526 0.025111403008194096 100.93340588760753 -2.0040349282937386 -0.11451937961523917 KS(ph)PHKDLGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPHKDLGHR 10 2 O94888;C9JAT7 O94888 UBXN7 UBX domain-containing protein 7 1 KS(1)PHKDLGHR 77.91199999999998 0.014996 126360000.0 21020.0 25133.0 24857.0 23706.0 19384.0 20643.0 24461.0 13697.0 37448.0 22367.0 True False 20906.83065554155 25969.53671178067 28356.649539082857 26707.177169369053 21852.437502030632 19215.9979983951 23277.727979905623 14719.139691956716 28219.44217749135 20939.518910647876 0.9984389204333772 1.240216493158064 1.3542168595221795 1.2754436853746571 1.0435978780256758 0.917690520034997 1.111664889687067 0.7029359057753682 1.3476643039368774 1.0 14.353940676011312 3.1192415008529966 4.73324973414591 0.9814313472202755 1.2276433218061782 0.22065945997633563 0.17454661259180806 0.2621867482552931 9.72495104329401 0.05041361318233674 0.06104151133752444 1315.9564008884588 -3.1192415008529966 0.24621197458590272 KS(ph)PLSSILFSALDSDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPLSSILFSALDSDTR 17 1 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A3B3IT55;A0A0G2JQF4;A0A1W2PPV8;A0A1W2PRR3;I3L233 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 KS(0.995)PLS(0.004)S(0.001)ILFSALDSDTR;KS(0.996)PLS(0.003)SILFSALDSDTR 193.54 7.6336e-11 693090000.0 494810.0 495830.0 458730.0 437320.0 451530.0 531110.0 511450.0 491100.0 659650.0 525270.0 True False 492145.99793855916 512333.40181443613 523315.1966473619 492684.66716057 509029.66907201306 494395.6157984606 486709.2095712656 527748.3757552705 497088.0963571404 491746.8188937282 1.00081175724884 1.0418641913475335 1.0641964046145787 1.0019071770895267 1.035145830159442 1.0053865054189701 0.9897556849807476 1.0732115704226297 1.0108618444658743 1.0 18.907556194188025 1.0082793195195843 24.978196993739566 0.9999999597048226 1.0283488746710991 0.0962134625897123 0.026458892949272117 310.3150274296288 936199.0372793633 0.025249920638336365 0.0063124801601841885 10.192467129125367 -1.0082793195195843 0.02834891496627656 KS(ph)PPKADEK ddPTM_BT-474_Trastuzumab_2h_R1 4 KSPPKADEK 9 2 Q13427;E9PG73;C9JM79;Q13427-2 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 KS(1)PPKADEK;KS(1)PPKADEK;KS(1)PPKADEK;KS(1)PPKADEK 92.856 0.0077122 9996900000.0 5812280.0 2931490.0 2793320.0 2453170.0 2447280.0 3793950.0 4145990.0 4074470.0 7970970.0 3943020.0 True False 5780987.330285014 3029062.872526872 3186595.1760273157 2763741.070470814 2758926.6018349924 3531683.1664976547 3945432.624480153 4378527.6411394365 6006631.249025806 3691373.0878107417 1.5660804781219144 0.8205789012573993 0.863254702308404 0.7487027197540517 0.7473984710310712 0.9567396961741965 1.0688252123602298 1.186151477236951 1.6272078454654888 1.0 21.815726127751056 1.775647583156613 2.213346789392504 1.32367830280811 0.9264680685103294 0.22479315503453923 0.2639512362877224 0.37442209247561786 3.6407395486410885 0.16658127537458262 0.07369355998929522 59.65510070127796 -1.775647583156613 -0.3972102342977807 KS(ph)PPKADEKER ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPPKADEKER 11 3 Q13427;E9PG73;C9JM79;Q13427-2 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 KS(1)PPKADEKER 84.759 0.01122 309100000.0 559280.0 355400.0 296250.0 292390.0 291080.0 509370.0 503830.0 477800.0 1047900.0 495650.0 True False 556268.8986218494 367229.27415616333 337959.4249488391 329406.5440205782 328147.31263367087 474158.45082800597 479457.81808249286 513455.86221923947 789659.0861406011 464017.19265268545 1.1988109652613967 0.7914130768663837 0.7283338425819925 0.7099015925195198 0.707187832325186 1.0218553500514607 1.0332759769989053 1.1065449090020218 1.7017884221623163 1.0 18.823818735167357 1.8934483035348921 1.470028750575444 1.3227609784541703 0.8277258721242866 0.4248098909354908 0.21878293130932402 0.35998984233034353 1.452683307625594 0.15444123294294002 0.06766795982171042 78.24350619664749 -1.8934483035348921 -0.4950351063298837 KS(ph)PPPAKDEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSPPPAKDEAR 11 2 Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 Q8IXJ6-5 SIRT2 NAD-dependent protein deacetylase sirtuin-2 1 KS(1)PPPAKDEAR;KS(1)PPPAKDEAR;KS(1)PPPAKDEAR 92.939 0.0075774 160315000.0 263096.0 216624.0 191455.0 186000.0 196394.0 251524.0 263916.0 264722.0 396230.0 285868.0 True False 261679.52036871333 223834.19888802667 218410.1998433081 209547.58092899053 221403.61178156247 234136.73790380915 251149.37482297447 284476.8998710785 298584.4257099822 267623.659496092 0.9777891867312073 0.8363767213611965 0.816109458537979 0.7829934816807572 0.8272946128845367 0.8748730898630738 0.9384423458518693 1.062973656390169 1.115687702171722 1.0 18.029846138730235 1.9673381813118573 2.0759379815684635 1.0702280274526732 0.8438250091663324 0.7373285341458009 0.0551749251445548 0.15568082751002027 1.2419308797221609 0.03260508172182989 0.016629483466028078 92.75518187198988 -1.9673381813118573 -0.2264030182863408 KS(ph)PRPAGPQLFLPDPDPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 KSPRPAGPQLFLPDPDPQR 19 2 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 KS(1)PRPAGPQLFLPDPDPQR;KS(1)PRPAGPQLFLPDPDPQR;KS(1)PRPAGPQLFLPDPDPQR;KS(1)PRPAGPQLFLPDPDPQR 138.49 9.4986e-07 5373790000.0 5877100.0 5782000.0 5386800.0 5433000.0 5183000.0 7174000.0 6429400.0 5965100.0 9622000.0 6517600.0 True False 5845458.346607191 5974450.374707185 6145214.617095041 6120817.242941952 5843024.327952166 6678078.265779506 6118385.35930686 6410246.052164043 7250787.028194345 6101641.188001911 0.9580141090730686 0.9791546553827467 1.0071412637601194 1.0031427700104274 0.957615196947621 1.0944724640496861 1.0027442077941053 1.0505773536419944 1.188333893256798 1.0 22.540765912873887 2.4932244918089554 0.917937917189854 1.078334465537037 0.979833571611754 0.34632743239736885 0.054354695451684115 0.6644407291689544 1.1317714799790954 0.03555322037841659 0.02566120051075739 311.33252348360406 -2.4932244918089554 -0.09850089392528305 KS(ph)PS(ph)PAGGGSSPYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPSPAGGGSSPYSR 15 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 KS(1)PS(1)PAGGGS(0.167)S(0.368)PY(0.001)S(0.464)R 105.68 0.020059 326050000.0 537440.0 381580.0 269330.0 298820.0 340910.0 517870.0 464080.0 451980.0 637990.0 466580.0 True False 534546.4827551969 394280.65963001887 307249.3229416735 336650.5813612949 384322.8677681217 482070.86583485274 441630.67744223867 485709.0427079357 480765.9131280101 436802.46494076523 1.2237716717731588 0.9026520939699534 0.7034056526749216 0.770715846136418 0.8798550800766194 1.1036358640975763 1.0110535376720646 1.1119649766028739 1.100648351865887 1.0 18.73662147205855 2.745137562038018 23.377311850438108 1.0710222761424038 0.8787763434807454 0.28676484235793553 0.13201629324080286 264.8792091136051 941494.263171774 0.04256390370066252 0.0441184429016005 556.0803668875401 -2.745137562038018 -0.19224593266165835 KS(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_BT-474_Trastuzumab_2h_R1 5 KSPTMEQAVQTASAHLPAPAAVGR 24 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 KS(0.972)PT(0.028)MEQAVQTASAHLPAPAAVGR;KS(0.907)PT(0.074)MEQAVQT(0.017)AS(0.002)AHLPAPAAVGR;KS(0.848)PT(0.152)MEQAVQTASAHLPAPAAVGR;KS(0.994)PT(0.006)MEQAVQTASAHLPAPAAVGR;KS(0.962)PT(0.038)MEQAVQTASAHLPAPAAVGR 187.43 8.8946e-18 5803040000.0 858995.0 875370.0 828077.0 798345.0 856823.0 1174378.0 985760.0 1021201.0 1349990.0 1134953.0 True False 854370.2663633168 904506.1612776611 944663.0438256875 899415.3951438431 965934.330262195 1093196.0130484558 938075.0228311088 1097408.2041736054 1017303.0534392102 1062519.3278578501 0.8040985645746477 0.8512844308453569 0.8890784563234504 0.8464932086997029 0.9090981264403156 1.0288716490950363 0.8828780787662149 1.0328359921565802 0.9574442805574176 1.0 20.019057654293153 3.252421308318937 0.6394184198840994 0.9948980046673624 0.8131613456358969 0.6449861133072605 0.0455324730680013 0.5481950482554363 0.47453000373581117 0.028776909768920677 0.05610566942521067 1788.2214842257754 -3.252421308318937 -0.18173665903146552 KS(ph)PYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK 33 2 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 KS(0.972)PY(0.028)GPPPTGLFDDDDGDDDDDFFSAPHSKPSK 178.59 6.791000000000001e-20 73863000.0 80302.0 68624.0 55701.0 65316.0 54949.0 80987.0 63023.0 62100.0 86443.0 65279.0 True False 79869.66295439088 70908.10835591608 63543.216638228776 73584.99890299964 61946.42944176027 75388.55931289184 59974.33671876019 66734.21733741049 65140.28092685547 61112.83833183636 1.3069211827587994 1.1602817066177227 1.0397687028246947 1.204084132100701 1.0136401962775414 1.2335961046930892 0.9813705001411613 1.0919836021205662 1.0659017434790135 1.0 15.899187866828251 7.999999990727419 0.8303142547533673 1.077762581712235 72.38688088251608 0.4351487645416633 0.07902737802283252 537.9793548342406 1.6147334502904669 0.023738545765882267 72360.83213432466 99999997.86490937 -7.999999990727419 71.30911830080385 KS(ph)QENLGNPSK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSQENLGNPSK 11 1 C9J1M4;C9J8V3;C9JJN3;C9JR71;C9JTF7;C9JP72;C9J3Y6;C9IYB9;C9K0C5;B4DGG1;Q9H0X4-2;Q9H0X4 C9J1M4 ITFG3 Protein ITFG3 1 KS(1)QENLGNPSK;KS(1)QENLGNPSK;KS(1)QENLGNPSK 114.63 0.00075462 727140000.0 597150.0 544730.0 587410.0 443924.0 611300.0 990380.0 659850.0 522294.0 928310.0 711280.0 True False 593935.0107496027 562861.0087537612 670112.2221407506 500124.7328834468 689145.4315410305 921917.3617037508 627930.5346282137 561270.2304351924 699540.4392167008 665885.5014425556 0.8919476538577858 0.8452819704504678 1.0063475187386397 0.7510671606454723 1.034930825266634 1.384498325472675 0.9430007610435769 0.8428930037060011 1.0505416287052898 1.0 19.344914602631167 3.1958247951269434 24.885201320074525 1.0306286046281619 0.8811115176840851 0.24892595453102284 0.14265237936611905 234.5909739725065 136602.24620610743 0.04530786132987753 0.05415362880033179 1569.7294098590232 -3.1958247951269434 -0.14951708694407673 KS(ph)REDLSAQPVQTK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSREDLSAQPVQTK 14 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 KS(0.999)REDLS(0.001)AQPVQTK;KS(0.5)REDLS(0.5)AQPVQTK;KS(0.999)REDLS(0.001)AQPVQTK 176.85 1.7044e-06 1419380000.0 680870.0 742680.0 731560.0 733870.0 742790.0 774090.0 783830.0 723350.0 821760.0 831370.0 True False 677204.2715717681 767399.6548404598 834557.2891664908 826777.866754614 837379.90363874 720578.980311858 745913.14837862 777330.0500968746 619248.2590198491 778311.2548283339 0.8700944093647134 0.9859804160351238 1.0722667621587494 1.0622715033678527 1.075893350435276 0.9258236673845743 0.9583738430496427 0.9987393157616927 0.7956306107335323 1.0 19.56998769391082 2.7165890668052586 24.374259921538048 0.9427839590006478 1.0177798955610078 0.19747561910784928 0.07728983835359965 1052.868206415944 1168003.371527518 0.025560266516022976 0.024119468571976777 520.7017854039754 -2.7165890668052586 0.07499593656035997 KS(ph)SDSKPGVSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSDSKPGVSSK 12 2 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 KS(0.496)S(0.496)DS(0.008)KPGVSSK 69.431 0.026086 322940000.0 450160.0 289820.0 250290.0 250030.0 235680.0 310540.0 349900.0 323390.0 601980.0 364770.0 True False 447736.3885774774 299466.4835001103 285528.65644032025 281683.7723638467 265692.4510151969 289073.1007325301 332974.00025219633 347523.00394114654 453630.0951187313 341490.0663046916 1.3111256600301469 0.8769405410256176 0.8361258045660389 0.8248666657041694 0.7780385938902687 0.8465051527285339 0.9750620387156537 1.0176665098980422 1.3283844535436171 1.0 18.38148408662304 1.5676824213303377 2.891596606447186 1.1656182638355888 0.9029353196969938 0.2533206333436695 0.16093102474309817 0.2767337805182064 5.230804853335778 0.11040842784991539 0.04241982092011775 36.95578410720967 -1.5676824213303377 -0.26268294413859494 KS(ph)SGTGTEPVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSGTGTEPVAK 12 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9;A0A0U1RR74 Q6ULP2-7 AFTPH Aftiphilin 1 KS(0.633)S(0.336)GT(0.03)GTEPVAK;KS(0.62)S(0.377)GT(0.002)GTEPVAK 126.16 0.00017911 782790000.0 698790.0 638730.0 519090.0 505950.0 516810.0 727520.0 762610.0 693330.0 1078570.0 774610.0 True False 695027.7922828671 659989.741929561 592173.359988837 570003.2181237784 582622.6901271392 677228.2547978691 725719.6408468917 745069.8052584032 812770.8755975458 725173.7266230149 0.9584293621881046 0.9101125946785161 0.8165951664388984 0.7860229862134778 0.8034249845761696 0.9338841575957005 1.000752804747104 1.0274362927184915 1.1207947085761818 1.0 19.467967130962176 2.292869576020777 2.0984729859951092 1.0472868774630508 0.8526453423840464 0.6987756670097032 0.056586991376668935 0.18852257620151636 1.6961974457944533 0.02780452599314314 0.019483012985929516 196.27707441017031 -2.292869576020777 -0.1946415350790044 KS(ph)SPQKEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSPQKEVK 9 2 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 1 KS(0.5)S(0.5)PQKEVK 65.395 0.052514 751710000.0 451420.0 451860.0 409280.0 447600.0 390450.0 549990.0 718400.0 586920.0 1439200.0 711110.0 True False 448989.6048774765 466899.88694486197 466903.06647446746 504266.114106538 440171.4931215362 511970.4858372002 683648.2474454929 630718.950719372 1084528.4442919674 665726.3509880994 0.6744356809837362 0.701339050575164 0.7013438266060372 0.7574675590925383 0.661189830428396 0.7690404399304787 1.0269208157838323 0.947414729465391 1.6290904553834533 1.0 19.34456974902826 1.844679508008924 1.3880613165486924 1.264456204317623 0.7044567684232711 0.6384244864759282 0.16820605917764977 0.24683970453382442 0.8910423298710445 0.11980902432355345 0.05019086142865104 69.93257310610517 -1.844679508008924 -0.559999435894352 KS(ph)SPSKDR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSSPSKDR 8 2 Q9BUQ8;F8VVA2;F8W1J5;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 KS(0.891)S(0.101)PS(0.008)KDR;KS(0.427)S(0.427)PS(0.147)KDR;KS(0.333)S(0.333)PS(0.333)KDR 94.616 0.0053394 702750000.0 1546650.0 981380.0 851410.0 867750.0 908870.0 1254810.0 1334140.0 1281800.0 2011390.0 1377010.0 True False 1538323.0082489704 1014044.6400432622 971281.1274116159 977607.0610275888 1024609.2072054588 1168067.9382050165 1269602.5512902709 1377454.4248485165 1515709.8857451482 1289128.0428824269 1.1933050535533738 0.7866128160364181 0.7534403838115872 0.7583475252324102 0.7948079423627176 0.9060914814895145 0.9848537220953646 1.0685163762077474 1.1757636443592487 1.0 20.2979641360937 2.0908047204242277 1.8665520523000454 1.0908830136107859 0.8433518886471405 0.3718060103806605 0.12666254422051046 0.3480745898761777 2.3222750063457474 0.07148407639543924 0.03950314760184615 123.25504949418287 -2.0908047204242277 -0.24753112496364538 KS(ph)SPSSPAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSPSSPAVR 10 1 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 KS(0.455)S(0.455)PS(0.055)S(0.035)PAVR 85.522 0.015022999999999996 158610000.0 207020.0 203020.0 186280.0 176250.0 180840.0 211810.0 224270.0 216700.0 286160.0 235280.0 True False 205905.4273220845 209777.39797181822 212506.60482521434 198563.23192868053 203868.9020773431 197168.07324710893 213421.20330540164 232871.2543803035 215639.7023475468 220264.22896665774 0.934811014426011 0.9523897682159415 0.9647803722926899 0.9014774339901457 0.9255651861120107 0.895143411039089 0.968932651055692 1.0572359183004432 0.979004640740776 1.0 17.74887569402095 1.9875592766588932 7.958127451505256 1.0172711704607638 0.930376994634089 0.6593466802437635 0.026737131120103726 0.08897532427818501 37.55661230870732 0.01083524462454486 0.007301096937803551 97.17605776909157 -1.9875592766588932 -0.0868941758266748 KS(ph)SPSTGSLDSGNESK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSPSTGSLDSGNESK 16 1 Q15057;A0A0U1RQT1;A0A087X1H5 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 1 KS(0.491)S(0.491)PS(0.016)T(0.003)GSLDSGNESK 103.9 0.00085939 276130000.0 116780.0 102280.0 70042.0 82244.0 79638.0 119170.0 110960.0 111610.0 162530.0 118690.0 True False 116151.26945547767 105684.32797043447 79903.30478402214 92656.08196733275 89779.42724859239 110932.05839600576 105592.44089163691 119938.90494409652 122476.65929042075 111115.10258437862 1.0453238736586206 0.9511247842315573 0.7191039104998814 0.8338747822058802 0.8079858197531309 0.9983526614824131 0.9502978302292624 1.0794113685222697 1.1022503371889918 1.0 16.7616953932592 2.252667957299771 1.615439080229244 1.0617023945503996 0.8686996594370745 0.4196795390273629 0.09039453342609757 0.3672635256898084 1.9053372164580953 0.05148382024466912 0.03187228734553056 178.92373577751832 -2.252667957299771 -0.1930027351133251 KS(ph)SPSVKPAVDPAAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSPSVKPAVDPAAAK 16 2 Q6FI81-3;Q6FI81;H3BV90;H3BT65;H3BPG7 Q6FI81-3 CIAPIN1 Anamorsin 1 KS(0.5)S(0.5)PS(0.001)VKPAVDPAAAK;KS(0.617)S(0.383)PSVKPAVDPAAAK 150.98 3.5851e-07 3150200000.0 4674500.0 3112400.0 2753600.0 2467200.0 2530200.0 4198800.0 4388600.0 4069500.0 6526200.0 3995900.0 True False 4649333.011385772 3215994.352514466 3141282.9452797403 2779547.267032287 2852405.972329649 3908546.8389120493 4176306.651919948 4373186.754502293 4917905.45659966 3740878.240937892 1.2428453191836892 0.859689662529131 0.8397180402461256 0.7430199776658367 0.7624963413977649 1.044820650974227 1.1163973759469081 1.169026755975322 1.3146392744840234 1.0 21.834945578769773 2.449111611714565 3.0907085107350056 1.163540376608935 0.8775000634325455 0.4031437636267998 0.14841781669034043 0.2411090107030048 4.763266306300885 0.0553802610629682 0.046761217672741766 281.26235690411954 -2.449111611714565 -0.28604031317638945 KS(ph)SSLESLQTAVAEVTLNGDIPFHRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSSLESLQTAVAEVTLNGDIPFHRPR 27 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 KS(0.33)S(0.33)S(0.33)LES(0.009)LQTAVAEVTLNGDIPFHRPR 52.642 0.050027 252490000.0 69893.0 50793.0 60953.0 44759.0 56766.0 43117.0 46838.0 51441.0 70453.0 65091.0 True False 69516.70385384225 52483.61429998313 69534.65258702639 50425.484810756316 63994.81362155756 40136.423276500595 44572.26700146436 55279.7886321052 53090.80217183292 60936.83665279124 1.1407993534344059 0.8612789436220118 1.1410938999545412 0.827504143316021 1.0501827324281732 0.6586561672899397 0.7314502926272709 0.907165380885801 0.8712431607557212 1.0 15.89502698847137 3.304697155158514 1.5553146099139807 0.8362950057088442 1.022296589667847 0.2443931175299643 0.13448730246839255 0.5218868881274408 2.61189435848619 0.043061229623278637 0.06627974666339856 2016.959394918303 -3.304697155158514 0.1860015839590029 KS(ph)SSLVDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSSLVDIR 9 1 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 KS(0.333)S(0.333)S(0.333)LVDIR 62.823 0.04906 210430000.0 711970.0 707900.0 609890.0 576370.0 579580.0 730850.0 722800.0 630840.0 856370.0 756010.0 True False 708136.8326273027 731462.0235654133 695757.2107410892 649338.3829034523 653386.0775601998 680328.0597358457 687835.4026358599 677916.4841406123 645329.0882700881 707760.7945472749 1.0005313067394024 1.0334876263290327 0.9830400554839097 0.9174545805674458 0.9231735956470203 0.961240103969058 0.9718472793846112 0.9578327725460509 0.9117898211398926 1.0 19.432902322271207 4.000161928273317 5.574230575950499 0.9486877324783404 1.0157438243239039 0.5185116412146004 0.026373792551892275 0.11781776874824557 13.017671549569815 0.006625900325056637 0.013660975167443593 10003.729231468284 -4.000161928273317 0.06705609184556349 KS(ph)STSDWPTDNQDGWDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSTSDWPTDNQDGWDGK 18 1 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ISZ3;A5PLL3 A0A3B3IS53 KAT6A;MYST3 Histone acetyltransferase KAT6A;Histone acetyltransferase 1 KS(0.472)S(0.279)T(0.093)S(0.156)DWPTDNQDGWDGK 184.3 3.6094e-14 192660000.0 341690.0 230990.0 194620.0 187340.0 205450.0 280090.0 273400.0 265930.0 433000.0 298240.0 True False 339850.3790053277 238678.3625135965 222020.80433263458 211057.22479159696 231612.83970244482 260728.03756094034 260174.5975105759 285775.0469651786 326292.9519027386 279206.0678638897 1.2172026976541268 0.8548466168362429 0.7951861721030634 0.7559191904614528 0.8295408530138173 0.9338193813468366 0.9318371892884812 1.023527350789852 1.1686456329516568 1.0 18.090970769788164 1.7493966891948485 1.9709223717382907 1.0867235658377 0.8822538237325227 0.262660136706952 0.12528838679658708 0.39354998651782475 3.076431988308102 0.08829890217770797 0.0368390667991009 56.15606773335785 -1.7493966891948485 -0.2044697421051772 KS(ph)STSDWPTDNQDGWDGKQENEER ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSTSDWPTDNQDGWDGKQENEER 24 2 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ISZ3;A5PLL3 A0A3B3IS53 KAT6A;MYST3 Histone acetyltransferase KAT6A;Histone acetyltransferase 1 KS(0.514)S(0.339)T(0.059)S(0.088)DWPTDNQDGWDGKQENEER 196.45 1.0315e-24 441620000.0 274760.0 206430.0 197370.0 180340.0 202350.0 289980.0 258640.0 276160.0 408170.0 263740.0 True False 273280.7226887058 213300.89776042994 225157.9804292061 203171.02550932323 228118.07307758456 269934.36513949605 246128.5950992514 296768.46151206613 307581.9726977851 246907.88740082606 1.1068124455865054 0.8638885537672634 0.9119108457790515 0.8228616252323233 0.9238994974156559 1.0932593850324805 0.9968437934090393 1.2019399810841087 1.2457357111417902 1.0 17.913613398128135 2.3656654409994227 1.4437156079850084 1.1542974774838948 0.9170837956670246 0.43760968731674266 0.10115490847997403 0.337913184261039 1.4142361587854229 0.053007210251988325 0.03557858438293605 232.09481637734982 -2.3656654409994227 -0.2372136818168702 KS(ph)SVNGSSATSSG ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 KS(0.43)S(0.21)VNGS(0.353)S(0.005)ATSSG;KS(0.617)S(0.362)VNGS(0.021)SATSSG 92.495 0.0064051 964010000.0 1250600.0 1181070.0 1074270.0 1045810.0 1135610.0 1161530.0 1258540.0 1304930.0 1666970.0 1360750.0 True False 1243866.9085547214 1220381.200978108 1225517.8782777707 1178209.4387706846 1280223.202212187 1081236.1650475152 1197659.6121103142 1402310.5029002763 1256167.5797536 1273905.7700033132 0.9764198717394037 0.9579838868105087 0.9620161138563517 0.9248795841215323 1.0049591047922308 0.8487567844556533 0.9401477254531937 1.100796099617815 0.9860757438521791 1.0 20.280827135633704 1.7639882776824363 24.999999959572797 1.0381871613575941 0.944003198948702 0.3889156227351436 0.04778345388029399 13.711040855654115 13489.492854376478 0.021353290743683594 0.011842282066159084 58.07487419524569 -1.7639882776824363 -0.09418396240889215 KSADTLWGIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSADTLWGIQK 11 1 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 83.04700000000003 0.027694 585360000.0 929660.0 931150.0 967380.0 704520.0 577140.0 1072700.0 1163100.0 747480.0 1545000.0 1172600.0 False True 924654.8138549353 962142.7648579385 1103578.6953823043 793712.1597639375 650635.3580232128 998546.7738641885 1106836.409526522 803260.7532265309 1164255.4519393342 1097763.6640866313 0.8423077244265257 0.8764571066928755 1.0052971613890238 0.7230264452452315 0.5926916505881608 0.9096190797087514 1.0082647529124036 0.7317246685285993 1.060570221103124 1.0 20.06613606141772 1.224323836312705 24.99851185505912 1.0302852673257052 0.837038789126299 0.28652035667658415 0.12251877465184273 359.2266152700457 630751.6761038643 0.11879873531284368 0.03026397832899616 16.761922808053395 -1.224323836312705 -0.1932464781994062 KSAEPSANTTLVS(ph)ETEEEGSVPAFGAAAK ddPTM_BT-474_Trastuzumab_2h_R1 5 KSAEPSANTTLVSETEEEGSVPAFGAAAK 29 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 KSAEPS(0.001)ANT(0.002)T(0.006)LVS(0.779)ET(0.212)EEEGSVPAFGAAAK;KSAEPSANTTLVS(0.976)ET(0.023)EEEGSVPAFGAAAK;KSAEPSANTTLVS(0.998)ET(0.001)EEEGSVPAFGAAAK;KSAEPSANTTLVS(0.991)ET(0.009)EEEGSVPAFGAAAK;KSAEPSANTTLVS(0.999)ET(0.001)EEEGSVPAFGAAAK 326.1 6.588299999999997e-94 5244560000.0 3687350.0 3095270.0 2759950.0 2556480.0 2863430.0 3959490.0 3808690.0 3730690.0 5242550.0 4165100.0 True False 3667497.7173030986 3198294.1908197734 3148526.9700845494 2880130.105878202 3228070.837620699 3685779.7759369053 3624449.1140912813 4009093.0318599725 3950593.799070911 3899279.752078488 0.9405577312959299 0.8202269121919097 0.8074637292710906 0.7386313086007654 0.8278633601243909 0.9452463045187313 0.9295175890263555 1.0281624522382498 1.0131598782993374 1.0 21.894776233282094 2.430027971290035 1.6244886216671748 1.0077414415400976 0.8203499406974654 0.7036597538920898 0.05155921981413064 0.2077267404530494 1.1125466622820113 0.025489888147726125 0.018872092021203022 269.17081612415143 -2.430027971290035 -0.18739150084263223 KSAS(ph)PEVSEGHENQHGQESEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSASPEVSEGHENQHGQESEAK 22 1 O60930 O60930 RNASEH1 Ribonuclease H1 1 KS(0.359)AS(0.641)PEVSEGHENQHGQESEAK 232.12 2.9331e-27 168270000.0 82410.0 67198.0 70851.0 64414.0 70884.0 103090.0 96837.0 31943.0 123590.0 83566.0 True False 81966.3137166118 69434.6448079512 80826.2049520682 72568.80579548374 79910.65723761561 95963.63094775713 92152.62435673608 34326.748863267385 93132.90052115358 78232.74633554801 1.047723843990471 0.8875394008301731 1.0331505506069874 0.9276014098268892 1.0214476799123333 1.2266427479889253 1.177929047274965 0.4387772444551103 1.1904593010412459 1.0 16.25548499075393 KSCVEEPEPEPEAAEGDGDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSCVEEPEPEPEAAEGDGDKK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 ;; 185.61 1.9868e-17 1508550000.0 597380.0 355900.0 301882.0 299232.0 293732.0 494280.0 505340.0 497530.0 850830.0 516010.0 False True 594163.7724551569 367745.9163539069 344384.3615946176 337114.7405190518 331137.0291140354 460111.58700996585 480894.77361373283 534658.2150061495 641154.3470378913 483077.80002161296 1.2299546210332455 0.7612560882273082 0.7128962696675563 0.6978477183260527 0.6854734974350308 0.9524585625532376 0.9954810044928945 1.1067745505635507 1.3272279268664509 1.0 18.881896029267164 2.108542901377321 1.6824423459344509 1.1589431795520273 0.8063207503406418 0.40613210568298597 0.16797786650236185 0.35233958047724384 1.9093651503789033 0.09918048777458487 0.05395430310193292 128.39345964956573 -2.108542901377321 -0.35262242921138554 KSDGACDS(ph)PSSDKENSSQIAQDHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 KSDGACDS(0.332)PS(0.332)S(0.332)DKENS(0.002)S(0.002)QIAQDHQK 115.66 0.0007032 183910000.0 90595.0 77066.0 75239.0 70378.0 57101.0 112230.0 107930.0 106730.0 205530.0 115190.0 True False 90107.24658605063 79631.09522261927 85831.99721088835 79287.84758398114 64372.473885856976 104471.80426100302 102709.01356736083 114694.7345639584 154879.88546090055 107838.47558087947 0.8355760418596578 0.7384293480938118 0.7959311066717915 0.7352463687648738 0.5969341975497164 0.9687804255230645 0.952433841577522 1.0635789679532022 1.4362210206202308 1.0 16.718512482083224 2.0245169851753904 1.362099689866567 1.1969340476966739 0.7506552239846837 0.6596258248611648 0.1291885652252385 0.24964026891972527 0.8636484197851837 0.08693042528025732 0.04172123991191498 105.80762963517044 -2.0245169851753904 -0.44627882371199024 KSDGIYIINLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSDGIYIINLK 11 1 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 0 ; 169.89 0.0012527 0.0 6531500.0 6181400.0 6110500.0 5383400.0 5165600.0 6588900.0 6822700.0 6448400.0 9100900.0 7118300.0 False True 6496335.129717876 6387144.162264785 6970805.286581881 6064937.888027565 5823408.541090046 6133424.851602263 6492659.935754958 6929612.3523117285 6858105.140812091 6664003.999716767 0.9748396204435026 0.958454431080211 1.046038580840911 0.9101041788518338 0.8738603010048541 0.9203813280818777 0.9742881210801957 1.0398571718453726 1.0291268044112178 1.0 22.667957835929467 1.9148370332566875 4.334086052790166 1.0252763694585598 0.9471610060009988 0.3741402575118702 0.043656757921356 0.2573937330053994 8.295184458319392 0.022476808698234877 0.013053256307567245 82.19341655556347 -1.9148370332566875 -0.07811536345756098 KSDIDEIVLVGGSTR ddPTM_BT-474_Trastuzumab_2h_R1 7 KSDIDEIVLVGGSTR 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;;;; 228.84 8.705600000000001e-13 14955320000.0 17753960.0 20773770.0 18052620.0 16340830.0 17322350.0 20403440.0 20000110.0 20864630.0 33410640.0 21208070.0 False True 17658374.652010385 21465212.37644086 20594271.97981407 18409577.402536962 19528248.594887566 18992998.21733155 19032628.271460302 22421654.639044378 25177035.451639082 19854552.815457776 0.8893866719708965 1.0811229331606553 1.0372569038059818 0.9272219613127812 0.9835652697090127 0.9566066984165233 0.9586027168862971 1.129295373582425 1.2680736597621822 1.0 24.2429665315868 1.6648276371297703 4.973255126118597 1.15341214818272 0.9804188827928761 0.4453818153043748 0.07902754342858323 0.12450941671930361 6.9284388275989475 0.04061562518745568 0.019535042148165108 46.21975479491999 -1.6648276371297703 -0.17299326538984383 KSDIYVCMISFAHNVAAQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSDIYVCMISFAHNVAAQGK 20 1 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ; 232.84 2.1024e-27 529410000.0 474880.0 524540.0 526890.0 522220.0 470720.0 620050.0 646280.0 547540.0 822480.0 672780.0 False True 472323.2988441275 541998.9968088736 601071.5321900215 588332.9984555776 530663.401823971 577187.4029407006 615016.9673706477 588400.215151784 619790.8246673549 629842.6044040625 0.7499068744182924 0.8605308580573018 0.9543202190311287 0.9340952713293189 0.842533353751241 0.9163994288490812 0.9764613620454552 0.9342019911601724 0.9840408069152161 1.0 19.264631823341656 5.640754896771057 0.910155497437105 0.941894108495565 1.0703447379813238e-15 0.6643046284426499 0.0423883689826186 5.916266616020958 1.1356367956399167 0.013724210804744452 8.15514164563981 437275.2500177104 -5.640754896771057 -0.9418941084955639 KSDLFQDDLYPDTAGPEAALEAEEWVSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 KSDLFQDDLYPDTAGPEAALEAEEWVSGR 29 1 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ;;;; 230.44 6.3189e-35 1164416000.0 561598.0 571565.0 516426.0 558173.0 485092.0 630367.0 615372.0 564655.0 716521.0 641515.0 False True 558574.4187674035 590589.1955066608 589134.2919447393 628837.6445692326 546865.5908344534 586791.213014306 585604.1054106733 606792.423359993 539944.0004394966 600572.9634713761 0.9300692051450059 0.9833762613837825 0.9809537354786668 1.0470628596640175 0.9105731095078133 0.9770523295331011 0.9750757044170267 1.0103558772487322 0.8990481311688798 1.0 19.195980003704623 1.265249166523831 24.9993375767704 0.9495237261826164 0.9787725781104955 0.06115802214553101 0.042216680121167596 513.8231939073893 481302.7557208199 0.026788328652137414 0.009775829296301306 18.4182840530907 -1.265249166523831 0.02924885192787907 KSDPVVSYR ddPTM_BT-474_Trastuzumab_2h_R1 4 KSDPVVSYR 9 1 P13639 P13639 EEF2 Elongation factor 2 0 ;;; 115.7 0.0022986 1816860000.0 412184.0 552990.0 470890.0 467243.0 543664.0 617390.0 671490.0 582380.0 850550.0 676990.0 False True 409964.84714194754 571395.9378604863 537187.2189507476 526395.9158924961 612896.3878510107 574711.2824797345 639007.4633590956 625840.1528657184 640943.3492860836 633783.9185997007 0.6468527129052674 0.9015626952525775 0.8475873293497626 0.8305605434980576 0.9670431354666753 0.906793728293891 1.0082418385921434 0.9874661292266085 1.0112963274647315 1.0 19.273631528207446 6.178133015004191 0.3317275661767391 1.014154641032966 8.746275322399913e-17 0.7716766669072258 0.05164029476005215 8.194235151219326 0.34293041710055455 0.04633167482942135 4.029910255677273 1507068.5780088028 -6.178133015004191 -1.014154641032966 KSDSDMWINQSSSLDSSTS(ph)SQEHLNHSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSDSDMWINQSSSLDSSTSSQEHLNHSSK 29 1 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 KSDSDMWINQSSSLDS(0.031)S(0.031)T(0.031)S(0.269)S(0.269)QEHLNHS(0.269)S(0.1)K 58.915 0.015474000000000003 484700000.0 39496.0 50693.0 66839.0 59060.0 64565.0 77849.0 65866.0 26691.0 76870.0 78275.0 True False 39283.35792441812 52380.2858604344 76249.35022499728 66536.98994444186 72786.9700432629 72467.48186683437 62679.80994744551 28682.81795415174 57926.4185052276 73279.42248540101 0.5360762488575055 0.7148021106589615 1.0405288093009732 0.9079900971885743 0.9932797990836211 0.9889199369887447 0.8553534924477988 0.39141708519695323 0.7904868316445577 1.0 16.16112051315992 -1.1543213045110594 4.341874409863371 1.000043977062363 0.7934349149662809 0.08139405252163723 0.19753688054517668 9.433699321304047e-05 1.8374686444896202e-05 0.21456866753034762 0.050563565095525405 0.07009365319842865 1.1543213045110594 -0.2066090620960821 KSDSDMWINQSSSLDSSTSS(ph)QEHLNHSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSDSDMWINQSSSLDSSTSSQEHLNHSSK 29 1 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 KSDSDMWINQSSSLDS(0.001)S(0.004)T(0.023)S(0.136)S(0.836)QEHLNHSSK 132.9 4.8361e-06 372830000.0 36974.0 55011.0 64577.0 66713.0 63157.0 83954.0 92100.0 15830.0 84150.0 62988.0 True False 36774.9360921976 56842.00788014826 73668.88028665383 75158.85895976197 71199.66958913281 78150.4575864585 87644.77114383335 17011.31498311125 63412.36005222975 58968.05191326014 0.6236416991745325 0.9639458322917092 1.2493015776579846 1.274569135679061 1.2074278745695202 1.325301668459643 1.4863094217993773 0.28848358443542066 1.07536806787355 1.0 15.847645913178457 1.7483851741225132 24.999999999999968 0.7267483531668015 1.1696956055309635 0.24392394651671068 0.2952969808471415 2.930395927082354 7472.4690198413355 0.13649646356950582 0.07569454470370329 56.02542685942381 -1.7483851741225132 0.442947252364162 KSDTPQS(ph)PSLNSSQPTNSADSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSDTPQSPSLNSSQPTNSADSK 22 1 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;A0A590UJF3 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 KSDT(0.001)PQS(0.989)PS(0.009)LNSSQPTNSADSK 243.28 5.7553e-31 368670000.0 187670.0 136080.0 134650.0 125170.0 125920.0 190750.0 202130.0 169800.0 232910.0 186590.0 True False 186659.60557209697 140609.34053790275 153607.54960121913 141016.50916603088 141955.16561368646 177563.9014772011 192352.19968841542 182471.33822692905 175512.4513341036 174681.6664522641 1.0685700987579376 0.8049461823535304 0.8793570196629423 0.8072771002821122 0.8126506261175329 1.0164999286042686 1.1011584878655838 1.0445935279464125 1.0047559935665402 1.0 17.41436867395448 2.639187767533459 5.516734294653019 1.045033575944928 0.8676592765590226 0.5186597485007751 0.07627977648595992 0.16778337616339098 7.562457419377587 0.024344467888172714 0.022905852230038902 435.7002082696087 -2.639187767533459 -0.17737429938590543 KSDVEAIFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSDVEAIFSK 10 1 B4DY08;G3V4W0;G3V5X6;G3V3K6;G3V251;B4DSU6;G3V4M8;G3V2H6;P07910;G3V2Q1;G3V576;G3V555;G3V575;P07910-2;G3V4C1;B2R5W2;P07910-4;A0A0G2JNQ3;O60812;B2RXH8;A0A0G2JPF8;P0DMR1;B7ZW38 B4DY08;P07910;P07910-2 HNRNPC;HNRNPCL1;HNRNPCL2;HNRNPCL4;HNRNPCL3 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 3 0 ; 100.22 0.0066706000000000005 10425700000.0 17989300.0 15129500.0 14632600.0 13853400.0 17190500.0 19367200.0 17568900.0 17307800.0 25835100.0 19043600.0 False True 17892447.60759912 15633076.261524128 16692742.891160786 15607239.019578895 19379608.278923754 18028391.04948493 16719025.187284403 18599395.92322761 19468385.77760381 17828221.14395375 1.0036025166575382 0.8768724672694514 0.936310064609107 0.8754232345200587 1.0870186162962274 1.011227699270438 0.9377842608237154 1.0432558454961387 1.0919982212698938 1.0 24.0876594257934 3.2443691535458696 24.999997775181647 1.024540802543775 0.9207005263849841 0.48534409243060084 0.053101576799142174 124.04792183392074 533899.8890625872 0.014758426074374088 0.019463061532747405 1755.3719471177978 -3.2443691535458696 -0.10384027615879088 KSDYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSDYIK 6 1 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 86.47200000000002 0.085844 2684700000.0 2876600.0 3291000.0 2643300.0 2514300.0 2709000.0 2910400.0 3600200.0 2961400.0 4813600.0 3288800.0 False True 2861112.705220307 3400538.9455484855 3015453.6640245244 2832610.122203014 3053975.092499023 2709210.898344678 3426044.5719004245 3182394.705684497 3627352.778935385 3078905.968316664 0.9292627753697099 1.1044633972396594 0.9793912821810433 0.9200054017082218 0.9919026835914474 0.879926482401114 1.1127473872719642 1.0336121786221402 1.1781304191366957 1.0 21.553986376585186 2.216315471989988 24.999699655171014 1.0795624533808705 0.9732099156739756 0.3794694122145984 0.07094892860175034 266.9855838318863 300043.7657450953 0.02594206369267584 0.019174300015158303 164.55666305842638 -2.216315471989988 -0.1063525377068949 KSEAPAEVTHFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSEAPAEVTHFSPK 14 1 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 KSEAPAEVTHFS(1)PK;KSEAPAEVTHFS(1)PK;KSEAPAEVTHFS(1)PK 187.31 4.5253e-07 1435880000.0 2938900.0 2172130.0 2069380.0 1933880.0 1972790.0 3095280.0 3098140.0 2747970.0 4149860.0 3034970.0 True False 2923077.2889424833 2244428.033969688 2360730.716626593 2178709.0097148167 2224013.1128575644 2881310.5791053823 2948271.1321558743 2953037.475308919 3127182.6082750577 2841275.6162314587 1.0287904743361445 0.7899367527556505 0.8308700159676029 0.7668066403936409 0.7827516275268628 1.0140904890202185 1.0376575631428286 1.039335099502137 1.1006262787074537 1.0 21.438107355404163 2.6569884238029933 5.261596734803228 1.0433443610010784 0.8328077417282904 0.6516084261556598 0.07260791749128868 0.13371953706552478 6.3840364437328665 0.02357064358806582 0.02223817529975122 453.9295169165706 -2.6569884238029933 -0.210536619272788 KSEAPSGESR ddPTM_BT-474_Trastuzumab_2h_R1 6 KSEAPSGESR 10 1 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 ;;;;; 170.04 7.1324e-06 774162000.0 1600903.0 1737210.0 1579120.0 1506640.0 1512202.0 1548380.0 1793140.0 1562958.0 2069660.0 1733150.0 False True 1592283.9161250454 1795031.9846843805 1801446.3700429052 1697380.4695207193 1704771.9611765237 1441344.135094463 1706398.9677399914 1679593.862499911 1559620.0250231444 1622538.8831756327 0.9813533177144129 1.1063106119041932 1.1102639133782204 1.0461262205307564 1.050681730252248 0.8883264062513341 1.051684483764252 1.0351640135813636 0.961221972055706 1.0 20.629821621288183 2.9769736012525745 24.930185442360596 0.9956817758712644 1.0653465636712312 0.3044993392972647 0.05342879319309988 981.6117863877998 1062770.4490401153 0.016475250881104006 0.017586593768469463 948.3608150930988 -2.9769736012525745 0.06966478779996677 KSEDS(ph)LLRNSDEEESASESELWK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSEDSLLRNSDEEESASESELWK 23 2 Q70Z53 Q70Z53 FRA10AC1 Protein FRA10AC1 1 KS(0.125)EDS(0.546)LLRNS(0.328)DEEES(0.001)ASESELWK 86.304 0.0035642 108820000.0 314320.0 252980.0 243640.0 237850.0 232740.0 329640.0 345450.0 308410.0 457140.0 359260.0 True False 312627.7360442352 261400.28637036073 277942.3942431566 267961.78561269 262378.0594419427 306852.762689094 328739.26375284774 331425.12027424725 344483.97236216586 336331.7192220397 0.9295220110888334 0.777209735005069 0.826393641628741 0.7967187461013358 0.7801169037783374 0.9123515420991731 0.9774256930427083 0.9854114296470706 1.0242387282382492 1.0 18.359525319332878 2.4390376668083276 2.64714278484923 0.9957758717885467 0.8186136086668421 0.7921249494155189 0.04210283605422549 0.11682044410870561 1.6718423782941287 0.015627742792546997 0.012925035587989414 274.8132491131854 -2.4390376668083276 -0.17716226312170458 KSEDSLLRNS(ph)DEEESASESELWK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSEDSLLRNSDEEESASESELWK 23 2 Q70Z53 Q70Z53 FRA10AC1 Protein FRA10AC1 1 KS(0.316)EDS(0.223)LLRNS(0.461)DEEESASESELWK 114.79 0.00033149 118040000.0 301020.0 251240.0 222190.0 238700.0 223760.0 344610.0 347320.0 303250.0 482850.0 349440.0 True False 299399.34176646586 259602.37152221304 253472.42068989866 268919.3955255378 252254.5096705724 320787.92182468367 330518.80470875354 325880.05487229873 363858.0873585156 327138.4400293648 0.9152068516912626 0.793555081753494 0.7748169877778543 0.8220354523344884 0.7710940653991302 0.9805876735118286 1.010333131988663 0.9961533558790795 1.1122449789937703 1.0 18.31954176605374 2.6261192214781115 4.206102724101306 1.0221710318580852 0.8125016405088658 0.8148779734227084 0.049017400748698224 0.09584116202311188 2.872187064772451 0.016219796070944793 0.015214010490543734 422.784660166045 -2.6261192214781115 -0.20966939134921947 KSEEEIDFLR ddPTM_BT-474_Trastuzumab_2h_R1 6 KSEEEIDFLR 10 1 B0QY89;Q9Y262-2;Q9Y262;B0QY90 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ;;;;; 161.99 1.1072e-05 2249850000.0 6058330.0 6182750.0 5671400.0 5897540.0 5747520.0 6991210.0 7177640.0 6490070.0 9355590.0 7378710.0 False True 6025712.624423736 6388539.096198698 6469883.823307502 6644167.959311602 6479432.603779976 6507924.108238142 6830430.131952494 6974391.979307697 7050030.202983233 6907794.4105685465 0.8723063059324299 0.9248305199159638 0.9366063085793253 0.9618363785040257 0.9379886283046872 0.9421131726620837 0.9888004370110249 1.009640930922504 1.0205906232815896 1.0 22.71979371541236 4.470497391659944 0.28639683569018765 1.0217949730328852 0.7988717591095087 0.8174210964890699 0.018548762159266232 3.078545278008791 0.23541658296173193 0.025100466500353646 0.23965932996200368 29545.91143373447 -4.470497391659944 -0.22292321392337655 KSEEWPDWS(ph)EPEEPENQTVNIQIWPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSEEWPDWSEPEEPENQTVNIQIWPR 26 1 Q8IZE3;Q8IZE3-2;X6RHX1 Q8IZE3 SCYL3 Protein-associating with the carboxyl-terminal domain of ezrin 1 KSEEWPDWS(1)EPEEPENQTVNIQIWPR 205.37 2.0978000000000004e-25 129310000.0 64609.0 40396.0 49704.0 51316.0 53049.0 60905.0 57996.0 54634.0 86541.0 63068.0 True False 64261.15232273476 41740.55644010235 56701.891165087254 57812.60033845197 59804.47570394262 56694.78070494859 55190.511913765025 58711.066505830706 65214.130139988185 59042.94624476864 1.0883798389113835 0.7069524658722578 0.9603499617045481 0.9791618476961474 1.0128978905628623 0.9602295330912946 0.9347519970457953 0.9943790112105502 1.1045202566558292 1.0 15.849477093269309 2.9779888585171057 0.5318969663234927 1.0232780356410014 0.8995530925629517 0.11128872417119307 0.09704916529802075 2.1116099444842233 1.247171819717989 0.0779997640629793 0.12228686887280477 950.5804069517837 -2.9779888585171057 -0.12372494307804971 KSEGDGDKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSEGDGDKEEK 11 2 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 71.548 0.027407 198730000.0 255640.0 131570.0 115810.0 104140.0 122720.0 139230.0 191760.0 190440.0 392330.0 188840.0 False True 254263.6626442739 135949.22791425535 132115.04136143465 117324.11332228516 138347.6645815724 129605.35781216632 182483.8362056621 204651.59983472576 295645.5284526593 176788.06952594224 1.4382399407724893 0.768995488659408 0.7473074496242962 0.6636427086787595 0.7825622223974282 0.7331114489778835 1.0322180489610702 1.157609788847741 1.6723160632130536 1.0 17.43166139273788 1.7419186658971062 2.3629641544947275 1.3417842062634635 0.8397775816505251 0.34445468874576024 0.2584319666199698 0.2689556057266412 3.097764103210554 0.1611764261134664 0.07050485538681343 55.19740566205498 -1.7419186658971062 -0.5020066246129384 KSEIEYYAMLAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSEIEYYAMLAK 12 1 E5RI99;P62888 E5RI99 RPL30 60S ribosomal protein L30 0 ;; 164.53 9.148e-05 8843000000.0 12016090.0 12133360.0 11795130.0 10935570.0 10274990.0 12004750.0 13110140.0 12274640.0 17965740.0 13116200.0 False True 11951396.706553096 12537211.55282899 13455781.778892137 12320012.04075074 11583449.07186287 11174889.888641862 12475952.442601683 13190635.966158971 13538324.105582243 12279112.886656223 0.9733110866291279 1.0210193251381574 1.0958268649451546 1.003330790625678 0.9433457594848457 0.9100730640554395 1.0160304378469691 1.0742336264774717 1.102549038399542 1.0 23.549703000143413 1.8626070962786818 4.750296100578224 1.0653630915790044 0.9934388179244704 0.24770594781265387 0.05202379378159294 0.3274219419428257 10.664781264839606 0.02656417993443799 0.015300768030990123 72.87978726683474 -1.8626070962786818 -0.07192427365453402 KSEQEFSFDTPADR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSEQEFSFDTPADR 14 1 F8VXG7;Q99590-2;Q99590 F8VXG7 SCAF11 Protein SCAF11 0 111.64 0.0010257 391650000.0 221400.0 232340.0 235010.0 206250.0 218660.0 252990.0 239010.0 209110.0 300830.0 257750.0 False True 220208.00699985225 240073.29644750408 268097.365256461 232361.2288527113 246505.05490064065 235501.3967744017 227448.1731931337 224714.85003906465 226694.47741547524 241300.17432912302 0.9125895064605218 0.9949155532728893 1.1110533425922344 0.962955080735999 1.021570148409501 0.9759686143168217 0.9425943177434435 0.9312668366851791 0.9394708397776529 1.0 17.88046943227672 2.450875191666185 3.6200453349943746 0.9459355947519417 1.0042581369457528 0.15639290894414126 0.05012870015532009 0.35645676040533675 10.03595748864744 0.018067362600256185 0.015383024625413794 282.4068272438373 -2.450875191666185 0.05832254219381117 KSES(ph)DKDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSESDKDVK 9 2 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 KS(0.014)ES(0.986)DKDVK;KS(0.246)ES(0.754)DKDVK 89.23100000000002 0.0096454 753640000.0 1218740.0 550540.0 481680.0 425440.0 474850.0 556210.0 809330.0 783520.0 1727950.0 877800.0 True False 1212178.4392547442 568864.3910915421 549496.3571623855 479300.6603786539 535319.332843543 517760.511877505 770179.6159591597 841990.241033943 1302119.8758437352 821778.0524776108 1.475067915965996 0.6922360476486937 0.6686675988798769 0.5832483100924777 0.6514159525550577 0.6300490872401479 0.9372112258743283 1.0245956782313592 1.584515273823538 1.0 19.64838927488089 1.6218127928494794 2.5097150132188975 1.2897131343555648 0.767438025270867 0.31586613265525143 0.2807048608998826 0.26477660197451136 3.7836529467738447 0.19163350828721765 0.07507441242592565 41.86130787017636 -1.6218127928494794 -0.5222751090846978 KSES(ph)PFRETEPLVSPHQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSESPFRETEPLVSPHQDK 19 2 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 KS(0.028)ES(0.958)PFRET(0.014)EPLVSPHQDK 140.45 9.1281e-08 387440000.0 173900.0 174500.0 148380.0 153280.0 167270.0 220570.0 226260.0 215520.0 331570.0 246510.0 True False 172963.74172210635 180308.1270125223 169270.61425791966 172685.2322838474 188570.84301303455 205322.5150659306 215314.93940286353 231603.19678838484 249859.01631037227 230777.52075217085 0.7494826236037521 0.781307149954839 0.7334796461380538 0.7482757927245954 0.8171109664339382 0.8896989377332983 0.9329978877539273 1.0035778009639884 1.0826835104910102 1.0 17.816143177281575 2.3633066820267836 1.0019522101677425 1.0405310793206026 0.7501751672021503 0.9495719108956856 0.026837523802655708 0.10682810075827227 0.2104802279355296 0.018365899687020976 0.011622957907296417 230.83766999713083 -2.3633066820267836 -0.29035591211845235 KSESEVEEAAAIIAQRPDNPR ddPTM_BT-474_Trastuzumab_2h_R1 5 KSESEVEEAAAIIAQRPDNPR 21 2 Q16643;Q16643-3;Q16643-2;D6R9W4;D6R9Q9 Q16643 DBN1 Drebrin 0 ;;;; 197.4 5.1303e-22 5957190000.0 3355510.0 3436320.0 3166560.0 3103160.0 3074510.0 3831440.0 4071410.0 3473970.0 4845550.0 4031120.0 False True 3337444.3069922067 3550695.833900693 3612384.1237670747 3496019.7378258365 3466030.624451522 3566581.571039628 3874460.3440034147 3733215.2818622217 3651429.1295434507 3773850.4703845386 0.8843605047902536 0.9408681827128388 0.957214429166026 0.9263800368512236 0.918433481043129 0.9450776068179004 1.026659740339056 0.9892324328053792 0.9675606275866532 1.0 21.847605830124632 2.395340798786739 6.066175865786182 0.9951895684256593 0.928451962256435 0.6950332742283685 0.022045027203206804 0.12164008644784245 7.104931227600393 0.007784979243283396 0.0064904484963465205 248.5082429786534 -2.395340798786739 -0.0667376061692243 KSGIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSGISPK 7 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 KSGIS(1)PK;KSGIS(1)PK 84.507 0.013165 1699400000.0 2194780.0 1515450.0 1337590.0 1231310.0 1139960.0 1568850.0 2163280.0 1877180.0 3373800.0 2107880.0 True False 2182963.5483429823 1565890.8371411287 1525911.0454592996 1387193.7197509403 1285127.148927717 1460399.0921756595 2058633.8818678795 2017264.7037268947 2542372.196603834 1973353.293753139 1.1062203383719413 0.7935177355712856 0.7732579109324895 0.7029626798922679 0.6512402786647097 0.7400596217609432 1.043216077113361 1.022252178620403 1.288351257046564 1.0 20.912217837355737 2.169875942062391 4.936835622509207 1.0877889752398338 0.7828362718993206 0.5309326541243904 0.13543104086837146 0.16659153730015128 7.697418072478176 0.05330502118083093 0.03923139938728074 147.8685935343636 -2.169875942062391 -0.30495270334051316 KSHEAEVLK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSHEAEVLK 9 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 ;; 85.256 0.0096972 1201310000.0 1068780.0 980460.0 994030.0 803030.0 679660.0 1040910.0 1143340.0 778200.0 1811400.0 1142840.0 False True 1063025.8072326211 1013094.018399414 1133980.783736352 904693.5156634798 766210.6723395664 968954.3417385776 1088032.2762170509 836273.235619531 1365004.741516446 1069902.97276545 0.9935721596183129 0.9469027044394521 1.0598912355624885 0.8455846358899797 0.7161496807127196 0.9056469291173725 1.0169448108034889 0.7816346499701365 1.2758210569209156 1.0 20.029048536925174 1.2406847327361743 24.99978831280107 1.1379105176450615 0.9053445272591117 0.37823950867568445 0.11771126766146989 54.17693587971011 637702.3475693761 0.08803030514090024 0.028561369159276134 17.40542902879457 -1.2406847327361743 -0.23256599038594972 KSHHANS(ph)PTAGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSHHANSPTAGAAK 14 1 Q15555-4;Q15555-5;Q15555-3;Q15555;K7EL66;K7ERD8;Q15555-2 Q15555-4 MAPRE2 Microtubule-associated protein RP/EB family member 2 1 KS(0.111)HHANS(0.853)PT(0.036)AGAAK;KS(0.082)HHANS(0.835)PT(0.082)AGAAK 97.235 0.0014365 67438000.0 72318.0 82975.0 88953.0 83910.0 82541.0 100180.0 103864.0 48711.0 141130.0 96673.0 True False 71928.64792328521 85736.77271555326 101476.80920666353 94532.99739651395 93052.1070911634 93254.79239835405 98839.70152098931 52346.062169446115 106350.40254511201 90503.24637408076 0.7947631803833821 0.9473336720008249 1.121250488487731 1.0445260383895718 1.0281631965614508 1.0304027328798817 1.0921122222782058 0.5783887790398369 1.1751004169013954 1.0 16.465681922505365 KSHS(ph)PVKRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSHSPVKRPR 10 3 P78549-3;P78549-2;P78549;H3BUV2;H3BRL9;A0A494C106;H3BPD5 P78549-3 NTHL1 Endonuclease III-like protein 1 1 KSHS(1)PVKRPR;KS(0.002)HS(0.998)PVKRPR 99.844 0.003153 556510000.0 643070.0 526630.0 392640.0 511060.0 466370.0 670780.0 617570.0 471330.0 1123050.0 691490.0 True False 639607.7825717943 544158.5611954421 447920.29911194026 575760.1435998371 525759.4551084414 624410.5574462758 587695.7797534977 506503.03796524444 846289.3755990093 647358.5161856269 0.988027138872751 0.8405829962688053 0.691919991647258 0.8893991956610651 0.8121611780228477 0.9645513912838203 0.9078366392958347 0.7824150378829761 1.3072962731463318 1.0 19.3042053926394 1.2482202004872138 24.99997767741871 1.1536481707110513 0.8551460140162644 0.5462287656934472 0.10713750902152706 120.63480365092752 312220.4112097659 0.0701069650409732 0.02488849992454209 17.710066848666827 -1.2482202004872138 -0.29850215669478686 KSLDFYTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLDFYTR 8 1 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 78.655 0.044485 0.0 143290.0 173400.0 161050.0 135980.0 122900.0 158700.0 191530.0 131780.0 208400.0 182270.0 False True 142518.54256101552 179171.51417748648 183724.44012830558 153195.05405765653 138550.58651462875 147729.44253961643 182264.96218434762 141614.09276528098 157042.61241693032 170637.3725508021 0.8352129456200162 1.0500133206407851 1.0766952009508186 0.8977813697409537 0.8119592117686852 0.8657508043593115 1.0681421042748638 0.8299125253063755 0.9203295272855637 1.0 17.380574130992635 3.693445543523078 24.64046662384829 0.9052434787432843 0.9935778626924344 0.11128464349752376 0.09322409407298012 650.5128257608629 355289.8128668306 0.024517399617438387 0.03798240956622725 4936.800115001145 -3.693445543523078 0.08833438394915016 KSLDS(ph)DES(ph)EDEEDDYQQK ddPTM_BT-474_Trastuzumab_2h_R1 7 KSLDSDESEDEEDDYQQK 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 KS(0.005)LDS(0.995)DES(1)EDEEDDYQQK;KS(0.156)LDS(0.845)DES(1)EDEEDDYQQK;KS(0.046)LDS(0.954)DES(1)EDEEDDYQQK;KS(0.058)LDS(0.942)DES(1)EDEEDDYQQK;KS(0.148)LDS(0.852)DES(1)EDEEDDYQQK;KS(0.085)LDS(0.915)DES(1)EDEEDDYQQK;KS(0.005)LDS(0.995)DES(1)EDEEDDYQQK 245.37 1.1585999999999997e-23 16396920000.0 9915010.0 5589100.0 5906150.0 4355310.0 4754500.0 8302550.0 7900640.0 7738150.0 13213020.0 7762990.0 True False 9861628.687821167 5775129.814817697 6737684.582823916 4906691.79944 5359957.392870645 7728614.260600464 7518455.859824282 8315610.046529509 9956848.266397065 7267549.33196989 1.3569400409075922 0.7946461112294 0.9270916886913856 0.6751508074194286 0.7375192307663102 1.06344159600023 1.034524227685756 1.1442110217194135 1.3700420611659243 1.0 22.793037528702097 2.172522068965697 1.7464028913898095 1.1797819601578152 0.8882880054702138 0.24507011777922794 0.19644606260463024 0.4735420477223046 2.829007587367842 0.10719962902146805 0.06279093823383479 148.77229718004276 -2.172522068965697 -0.2914939546876014 KSLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSLDSDESEDEEDDYQQKR 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 KS(0.004)LDS(0.996)DES(1)EDEEDDYQQKR;KSLDS(1)DES(1)EDEEDDYQQKR;KS(0.065)LDS(0.935)DES(1)EDEEDDYQQKR 189.64 6.6703e-14 2625830000.0 2613450.0 2082090.0 1957980.0 1808590.0 1946570.0 2993000.0 3113370.0 2853900.0 5680860.0 3071950.0 True False 2599379.4755815943 2151391.1070000166 2233646.5649327533 2037557.3085610888 2194454.1512756795 2786100.9547641575 2962764.398871622 3066872.50981056 4280888.172623999 2875895.5209712894 0.9038504551457746 0.7480769351013897 0.7766786201532014 0.7084948996592669 0.7630507211661627 0.9687768329717329 1.030205853191424 1.0664060941875841 1.4885409227864423 1.0 21.455579834074076 2.157294192310292 1.256522029405149 1.2090551935526104 0.774175998348102 0.6477690733012335 0.1298739870354976 0.27296091434258424 0.8192866411421734 0.08402301667015406 0.044632372632854515 143.64621673847867 -2.157294192310292 -0.43487919520450835 KSLESINSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSLESINSR 9 1 E5RI99;P62888;E5RJH3;A0A0C4DH44 E5RI99 RPL30 60S ribosomal protein L30 0 ;; 150.04 0.00013819 2337900000.0 1552970.0 2454700.0 1956710.0 2351570.0 2211690.0 2094300.0 2429790.0 2087390.0 2732080.0 2218030.0 False True 1544608.9820711857 2536403.2056025136 2232197.7599717914 2649278.520888097 2493335.611786328 1949525.9704519135 2312251.775000814 2243161.6413516453 2058795.491996385 2076473.426448978 0.7438616658401715 1.2214956248874667 1.0749946190205386 1.2758547675799952 1.2007548856766421 0.938863914953075 1.1135474914095316 1.0802746679921276 0.9914865587840319 1.0 20.985703978396977 -0.3643253167667937 7.799716545847529 0.9999891773024971 1.0835103974345335 0.01468264857972279 0.14680600054193993 0.0 0.0 0.13372428084555293 0.03151911526506161 0.4321899694121192 0.3643253167667937 0.08352122013203633 KSLGDDISSETSGDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLGDDISSETSGDFR 16 1 P12429;D6RA82;D6RFG5 P12429 ANXA3 Annexin A3;Annexin 0 108.75 0.0016442999999999998 805140000.0 398860.0 345750.0 363370.0 266380.0 260790.0 363910.0 354550.0 303090.0 416940.0 350020.0 False True 396712.5820775122 357258.0797397111 414529.3375313405 300103.6806874435 294000.06067656714 338753.7582519962 337399.06198747136 325708.11485983484 314190.7237097639 327681.42393280147 1.210665460727695 1.0902603981999754 1.2650376471030873 0.9158397723179652 0.897213083207483 1.0337899359271137 1.0296557489833866 0.9939779647888393 0.9588298291031471 1.0 18.32193436410223 3.7344987987758866 24.999999383261713 0.9787827117964163 1.178815093714875 0.7386264905680149 0.05796480916453058 179.74836854032978 1106330.5270297374 0.015531912537534989 0.025053685961980144 5426.237504726551 -3.7344987987758866 0.20003238191845862 KSLS(ph)DS(ph)ESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 KS(0.048)LS(0.948)DS(0.841)ES(0.098)DDS(0.065)K 166.52 3.4542e-05 662450000.0 1595200.0 934260.0 742970.0 771430.0 805050.0 1374300.0 1293000.0 1431600.0 2517800.0 1284100.0 True False 1586611.6204433818 965356.2793279027 847573.7179889918 869092.9589034993 907568.3455948087 1279297.875754222 1230452.6502603323 1538433.261517504 1897321.92679149 1202147.6386266812 1.3198142802625372 0.8030263906941696 0.7050496051859734 0.7229502691502522 0.7549558111111907 1.0641770067574032 1.0235453705719428 1.2797373734186188 1.5782769651812214 1.0 20.197182657082635 2.0524489390972875 1.6265657477295399 1.317786816839784 0.8523820278357582 0.39333246322221627 0.2169567959326991 0.3522316187657164 1.7551506260842726 0.1339434788681537 0.06852672525484162 112.83632657199425 -2.0524489390972875 -0.4654047890040257 KSLS(ph)DSESDDS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 2 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 KS(0.042)LS(0.958)DSES(0.001)DDS(0.999)K;KS(0.31)LS(0.59)DS(0.134)ES(0.004)DDS(0.963)K 203.06 8.6495e-08 1001040000.0 3741900.0 2232610.0 1622170.0 1798380.0 2002940.0 3105550.0 3091520.0 3326870.0 5887500.0 2976520.0 True False 3721754.0261641764 2306921.0742087564 1850557.4358455979 2026054.7236079448 2258002.5366445133 2890870.6381783606 2941971.3668467277 3575137.9329035594 4436604.513458137 2786555.945273022 1.3356107321217 0.8278753843511037 0.6641020213445897 0.7270820193094797 0.8103201877123188 1.0374349896266368 1.0557733003126475 1.2829952109765639 1.5921462194161855 1.0 21.410051687806664 2.0670903800088736 1.6508022223622707 1.3243428104912531 0.8592049480138371 0.3883636430064298 0.2197712962800472 0.3546815250750015 1.8275638752480519 0.13422413366202243 0.06987189287302623 116.70524643496753 -2.0670903800088736 -0.46513786247741606 KSLS(ph)DSESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 KS(0.008)LS(0.496)DS(0.496)ESDDSK 212.59 1.1345e-08 11541000000.0 1226600.0 776750.0 662730.0 649570.0 646270.0 938810.0 996110.0 1015600.0 1745600.0 925380.0 True False 1219996.121888071 802603.6541947094 756036.623447576 731805.4953980866 728568.6537576021 873912.274421029 947924.3537902698 1091389.229112305 1315420.2698416198 866321.4561423229 1.4082487663651322 0.9264501629321926 0.8726975628817523 0.8447274279189301 0.840991122396846 1.0087621266042603 1.094194709214891 1.2597970665210063 1.518397426861741 1.0 19.724542923326524 1.9288690042214125 2.3127827617505665 1.2916982822451244 0.9630524039582795 0.2822964272223034 0.1937245899033907 0.3394487319159097 3.3246939844332264 0.10920386117076156 0.05563201883450369 84.89243762661219 -1.9288690042214125 -0.3286458782868449 KSLS(ph)PGVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLSPGVSR 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 KS(0.005)LS(0.995)PGVSR 95.264 0.0026696 0.0 249920.0 319280.0 295310.0 281180.0 294460.0 317800.0 341780.0 301130.0 413530.0 352520.0 True False 248574.4584887226 329907.0417911645 336887.0811194655 316777.3591699651 331957.7355988411 295831.23402073164 325246.79567360913 323601.84970715694 311621.0725181052 330021.8717924436 0.7532060137064349 0.9996520533604168 1.020802285890129 0.9598677731553252 1.0058658651800356 0.8963988732443313 0.9855310313437722 0.98054667695078 0.9442436976240441 1.0 18.332202114910505 4.742246424711404 24.857769497443545 0.9762153788538984 0.7532059213960969 0.7932225539509948 0.034275035992233395 141.10494133059615 951595.0249432412 0.007981385576440396 0.059363921131396755 55239.07845652987 -4.742246424711404 -0.22300945745780154 KSLSDS(ph)ESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 5 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 KSLS(0.023)DS(0.976)ES(0.001)DDSK;KSLS(0.197)DS(0.802)ESDDSK;KSLS(0.03)DS(0.722)ES(0.247)DDS(0.001)K;KSLS(0.001)DS(0.908)ES(0.054)DDS(0.038)K;KSLSDS(0.992)ES(0.007)DDSK 302.35 1.3762e-36 20318800000.0 7245730.0 5007170.0 4107460.0 4056530.0 4134770.0 6211750.0 6394680.0 6570450.0 10882830.0 5867750.0 True False 7206719.794756278 5173830.626551815 4685754.665317668 4570086.28207461 4661308.45079814 5782346.3433866585 6085344.898350145 7060770.34306906 8200902.368950775 5493265.171366485 1.3119191537159238 0.9418497860835638 0.8529999042722447 0.8319435052755284 0.8485496886433046 1.052624652734225 1.1077828410814503 1.2853503559000135 1.4929012368996466 1.0 22.38923250476 2.069969117872908 2.0248251036269598 1.2871428781577652 0.9479551612855749 0.3537189025235318 0.17233287866736446 0.3227251664139315 2.5265924154556605 0.09394614573029376 0.05225646910690566 117.48140124421609 -2.069969117872908 -0.3391877168721903 KSLSDSES(ph)DDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 KSLS(0.33)DS(0.33)ES(0.34)DDSK 177.88 2.4055e-05 4694600000.0 608930.0 478270.0 441170.0 370290.0 419660.0 590270.0 581720.0 612850.0 1039400.0 594120.0 True False 605651.5885384831 494188.9278296792 503282.90128161764 417168.67603331094 473101.2134803022 549466.0242461219 553579.9812137977 658583.9789892428 783253.7972464352 556202.7529482777 1.0889043344861038 0.8885050014767452 0.9048551065485625 0.7500298655877098 0.8505912834349036 0.9878879982768041 0.9952845042197698 1.1840717714866933 1.4082163259613916 1.0 19.085251359817203 1.887010360818894 2.018611381367232 1.2278516622949422 0.8982232011709027 0.5140664570887605 0.12363212851879776 0.23505203791065854 1.7817037423705058 0.07567815050091219 0.035772193602646093 77.09218604712638 -1.887010360818894 -0.32962846112403954 KSMYEEEINETR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSMYEEEINETR 12 1 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ; 80.632 0.021154 0.0 604320.0 558300.0 481700.0 464710.0 450470.0 566280.0 563600.0 496530.0 753480.0 564710.0 False True 601066.4082662637 576882.6780005231 549519.1729885429 523542.23835220997 507834.684355125 527134.3964797355 536336.5148389202 533583.5899282522 567794.9501147236 528669.7243274454 1.1369412330749955 1.0911967367422308 1.039437568867068 0.9903011545029207 0.9605896857459996 0.9970958657606825 1.0145020419340793 1.0092947739858908 1.0740069347399304 1.0 19.01200718376714 4.29525956124541 2.0230604912806767 1.0056249451210888 1.13482874478177 0.718413443866557 0.02717963132101169 0.19656436097427574 1.4709407343124117 0.007540225110108856 0.0338472270925274 19736.019302895682 -4.29525956124541 0.12920379966068118 KSNFAEALAAHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSNFAEALAAHK 12 1 P07237;H7BZ94;I3L312;I3L3U6;I3L0S0;I3NI03;I3L514;I3L3P5;I3L1Y5 P07237 P4HB Protein disulfide-isomerase 0 ; 101.53 0.0016993 4549200000.0 5912300.0 6717600.0 7116700.0 5327400.0 4339200.0 6610600.0 7969600.0 6448800.0 12491300.0 7473300.0 False True 5880468.833718276 6941191.255125044 8118669.500534684 6001848.293769366 4891771.399546606 6153624.781678568 7584080.001171487 6930042.202342889 9412986.489844529 6996347.595785974 0.8405055285217945 0.99211640932561 1.1604154009478753 0.8578545035961889 0.6991893030719354 0.8795481781644192 1.084005603972495 0.9905228560280479 1.3454143552721909 1.0 22.73817053700844 1.762966655683709 1.7925682549899116 1.148785948134156 0.9151509727491774 0.2987876277285806 0.14519136322017526 0.4451926117282463 2.821583109138813 0.10796331016061514 0.044448758153329306 57.93842106854221 -1.762966655683709 -0.23363497538497857 KSNFSNSADDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSNFSNSADDIK 12 1 P45973 P45973 CBX5 Chromobox protein homolog 5 0 103.21 0.0018608 0.0 223810.0 215600.0 184160.0 182790.0 219730.0 264450.0 242910.0 247300.0 354290.0 240540.0 False True 222605.03182762864 222776.1156670479 210088.1272525848 205931.1952581189 247711.31305825408 246169.19394834028 231159.51529368703 265754.7817639552 266979.9767427741 225188.5312633454 0.9885273933746853 0.9892871293988046 0.9329432812317536 0.9144834956860831 1.1000174461308136 1.09316932157819 1.0265154890297628 1.1801435014164636 1.1855842535362333 1.0 17.780773828005813 3.226639447622365 24.736167174553888 1.1063450995633386 0.9569967427918629 0.5821405112154103 0.058346837509650244 133.18700897583858 276359.61806113936 0.017381524322886074 0.020932329847671915 1685.1534258560323 -3.226639447622365 -0.14934835677147573 KSNLDEEVNVIPPHT(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 4 KSNLDEEVNVIPPHTPVR 18 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR 106.43 0.0003423 1635520000.0 2265590.0 1693270.0 1571890.0 1430230.0 1483760.0 2305850.0 2098700.0 1708640.0 2673530.0 2181730.0 True False 2253392.3151707132 1749629.468346669 1793198.4488871938 1611296.971355213 1672708.041065464 2146452.0168870483 1997177.8631874365 1836147.3930981162 2014674.354966579 2042490.1235269736 1.1032573862729644 0.8566158769597414 0.8779471823299185 0.7888885007545712 0.8189552653390707 1.0508995819184443 0.9778151875411315 0.8989749188737595 0.9863814428084664 1.0 20.96189767155163 2.7460921177586854 24.99468161272133 0.9697985268282535 0.881135791502126 0.21651929701485018 0.08670071394640332 1006.4175484797277 3339983.04101062 0.02741777286655483 0.028589185570933682 557.3039455665041 -2.7460921177586854 -0.08866273532612756 KSPENTEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPENTEGK 9 1 Q15651;A0A087WZE9;Q15651-2 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 0 149.33 0.00014091 670680000.0 724500.0 833030.0 755110.0 583760.0 623730.0 601440.0 883270.0 850810.0 1277000.0 892390.0 False True 720599.3724995165 860756.8999727311 861422.9244662212 657663.9561457386 703158.3183626488 559863.8684374732 840542.8556809305 914301.7625256402 962300.4609233204 835436.9061864823 0.8625419432196687 1.030307487733367 1.0311047047207398 0.7872096040714509 0.8416653767097203 0.6701450035204729 1.0061117116764153 1.0943995360453398 1.1518529452043627 1.0 19.67217135171312 2.009303891910704 24.997797101101654 1.0819936841097904 0.8764777444105418 0.4556268790961955 0.10548856852059796 192.77688799200297 517952.90882475534 0.0426848692084785 0.03148337780739033 102.16541228228637 -2.009303891910704 -0.20551593969924853 KSPEYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPEYLK 7 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03 Q9UM54-1 MYO6 Unconventional myosin-VI 0 69.812 0.094162 220000000.0 363910.0 406890.0 367700.0 320450.0 328190.0 459180.0 461270.0 413060.0 587940.0 459680.0 False True 361950.74899420154 420433.0876798005 419468.9638943064 361018.9371435216 369983.0511654679 427437.9673934537 438956.6078774817 443884.6346761802 443050.06499236956 430342.82884815213 0.8410753583671706 0.976972449628414 0.9747320874779056 0.8389100803882765 0.8597402497812218 0.9932498899482686 1.0200160859015244 1.0314674834114788 1.0295281698506036 1.0 18.71512690266641 2.5778296118822537 4.820027263248193 1.022027736746126 0.904026116336081 0.6176905254356527 0.04606091009457231 0.16483850811537326 6.130446908633834 0.016166066671688052 0.015063341262014507 378.29413827167616 -2.5778296118822537 -0.11800162041004492 KSPGGGGGGGSGNDNNQAATKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPGGGGGGGSGNDNNQAATKSPR 24 2 Q9NS37;E9PIM0;J3KN20 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 KSPGGGGGGGSGNDNNQAAT(0.089)KS(0.911)PR 96.016 0.0034823 44660000.0 22465.0 14459.0 17643.0 16947.0 17180.0 24203.0 23941.0 21300.0 42605.0 33180.0 True False 22344.05093609613 14940.259074349924 20126.98104429491 19092.488462384947 19367.77116616212 22529.9035777337 22782.882366498532 22889.51415920843 32105.568627750985 31062.423993172833 0.7193273435777935 0.48097531208876754 0.6479526854928833 0.6146490198762742 0.623511261401201 0.725310541852288 0.7334547481389717 0.7368875707909751 1.0335822032049857 1.0 14.922882796089748 1.4518987116020154 1.0092859345100496 1.0334426514821404 0.6197161813434507 0.7862526945531334 0.074350599330046 0.20506921060563696 0.415878117526867 0.06557683879566102 0.023745179580354894 28.307317209608087 -1.4518987116020154 -0.4137264701386897 KSPHLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPHLEK 7 1 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 94.302 0.009283 478960000.0 1658300.0 1807100.0 1799600.0 1619900.0 1650700.0 1932600.0 2095600.0 1888300.0 2709000.0 2092100.0 False True 1649371.897054452 1867248.231084983 2052968.0375963885 1824979.1739079105 1860906.860534563 1799003.91085106 1994227.8220305904 2029214.53459311 2041403.2487402307 1958580.3868630782 0.8421262196422461 0.9533681862686395 1.0481918696656023 0.9317867094701446 0.950130448061439 0.9185244184602498 1.0182006495146243 1.0360639513209675 1.0422871904736084 1.0 20.901376911985416 2.1558967244037697 6.323132204256336 1.0290191764585408 0.9463093002960926 0.41341322436814787 0.04837535710028041 0.22270786472945703 13.642662705860966 0.018721460051498502 0.013802841382995456 143.1847364267461 -2.1558967244037697 -0.08270987616244818 KSPLSWIEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPLSWIEEK 10 1 P53004 P53004 BLVRA Biliverdin reductase A 0 ; 131.17 0.00041234 2331600000.0 4210700.0 3982700.0 3650600.0 3406100.0 3655800.0 4549500.0 4490200.0 4270000.0 6168800.0 4907400.0 False True 4188030.059052751 4115261.7619070127 4164572.7484159684 3837311.9107646956 4121344.4603757495 4235003.773371053 4272991.87177026 4588649.082620662 4648581.897685022 4594205.530563488 0.9115896167882331 0.8957504697013998 0.9064837697640349 0.8352503790343142 0.8970744632468063 0.9218141733531939 0.9300828714222042 0.9987905530334111 1.011835858617946 1.0 22.131383969203256 1.9439077756477399 1.4573507639360643 1.0109245232386792 0.8891415868641649 0.8417605705131775 0.02124204833814046 0.1510634935786719 0.5968422129916922 0.01542024206778299 0.007017563034669593 87.88358723333695 -1.9439077756477399 -0.12178293637451432 KSPSDLWK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSPSDLWK 8 1 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 Q02880;P11388 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha 0 89.88600000000002 0.021787 570220000.0 625800.0 972710.0 966940.0 783380.0 653540.0 862260.0 925710.0 816800.0 1547900.0 916830.0 False True 622430.7623329158 1005086.0643343871 1103076.7472068542 882555.8276782396 736764.4451649352 802653.9957417119 880929.8707443872 877753.7636263595 1166440.785797342 858317.1244623458 0.7251757475103501 1.1709961687691808 1.2851622270705911 1.0282397991663943 0.8583825536819484 0.9351485282837604 1.0263454446352869 1.0226450557842346 1.3589858020460752 1.0 19.711151256613135 1.4231991834877535 24.959929208232108 1.1832683141228806 1.0154128130974982 0.14573690676395679 0.16645038406832424 153.03037920492164 70839.75890098665 0.10507710576709797 0.04083949640286487 26.497151171742292 -1.4231991834877535 -0.16785550102538238 KSPSGPVKS(ph)PPLSPVGTTPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 KS(0.01)PS(0.06)GPVKS(0.891)PPLS(0.039)PVGTTPVK;KSPS(0.001)GPVKS(0.998)PPLS(0.001)PVGTTPVK 215.07 3.4967e-25 3651400000.0 3304200.0 2672400.0 2637000.0 2297300.0 2211490.0 3231600.0 3126200.0 3298100.0 4492900.0 3183400.0 True False 3286410.55433113 2761349.218500086 3008266.678785106 2588137.9444525233 2493110.142971822 3008207.0983681483 2974973.7627562666 3544220.969412458 3385684.996775551 2980232.686554141 1.1027362290059988 0.9265549065878019 1.0094066454466613 0.8684348561538084 0.8365488219157986 1.0093866535791716 0.9982353982554447 1.1892430364255961 1.136047199284365 1.0 21.50699354519027 1.9358770450849365 4.019739351184425 1.125651250138273 0.9525615611859285 0.3800171223295591 0.08402944756899235 0.20573578201765133 6.24289559591255 0.039655746092089245 0.023105072691737727 86.27342609072025 -1.9358770450849365 -0.17308968895234444 KSPSSDSWTCADTSTER ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPSSDSWTCADTSTER 17 1 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 0 ; 175.01 2.0558000000000003e-09 570190000.0 396110.0 360120.0 308700.0 341460.0 332430.0 369350.0 422230.0 385720.0 470330.0 418060.0 False True 393977.3877719586 372106.3765028633 352162.27673149895 384688.8009893179 374762.99003301933 343817.70385637914 401805.1218247641 414504.38504647336 354423.4735991113 391379.0528808271 1.006638921710311 0.9507570059355419 0.8997984796052193 0.9829059530849589 0.9575448335175278 0.8784775304800736 1.026639312623386 1.0590867906583845 0.9055759908209279 1.0 18.578207017540894 2.20006779247398 24.999953032515958 1.0096388182301879 0.9463350666911228 0.1871655205975582 0.05054267142709146 221.47402144402344 143839.57100622854 0.01885374776114996 0.013924669986255429 158.514061033379 -2.20006779247398 -0.06330375153906509 KSPVGKS(ph)PPSTGSTYGSSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSPVGKSPPSTGSTYGSSQK 20 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 KS(0.04)PVGKS(0.929)PPS(0.012)T(0.012)GS(0.005)T(0.002)YGSSQK;KS(0.114)PVGKS(0.495)PPS(0.114)T(0.166)GS(0.056)T(0.056)YGSSQK 120.66 1.7567e-05 1525870000.0 1008080.0 815130.0 810780.0 730000.0 750040.0 1047850.0 1077670.0 1077820.0 1595420.0 1056070.0 True False 1002652.6092882181 842261.1092935101 924930.7765739057 822417.9251514135 845553.148164623 975414.595873579 1025538.9850008124 1158252.4014590622 1202250.1185327196 988670.7084529848 1.0141421210476755 0.8519126763767806 0.9355296648984214 0.831842106901585 0.8552424391005737 0.9865919840993892 1.0372907543761634 1.1715249491627289 1.2160268411450477 1.0 19.91513056429154 2.20087544631311 1.9772006365782253 1.1433848500489703 0.8956938241537011 0.6465333946054979 0.07334178835814747 0.18029051240005847 1.4079727286234813 0.035187042167899515 0.022106380191388827 158.80912259220182 -2.20087544631311 -0.24769102589526915 KSQAAPGS(ph)SPCR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSQAAPGSSPCR 12 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 KSQAAPGS(0.5)S(0.5)PCR 68.919 0.023007 0.0 45674.0 42790.0 46527.0 47090.0 51860.0 50978.0 53475.0 44596.0 68854.0 61259.0 True False 45428.09625885845 44214.23928289875 53077.597180066274 53051.58917175351 58464.06360169776 47454.01084930414 50888.20995566219 47923.97997389948 51885.85429633071 57349.39817353151 0.7921285611646558 0.7709625678915139 0.9255127145268491 0.9250592135461752 1.0194363927724825 0.8274543824455617 0.8873364250777551 0.8356492221398384 0.9047323241184004 1.0 15.807490726180832 7.999996129500195 0.01960828847407745 1.5768555216824796 2.672346021074772e-09 0.2566077929245413 0.0679823971520091 5873.211607907725 8.874985785179886 266.07213442118785 475.6991339330965 99999108.78845595 -7.999996129500195 -1.5768555190101334 KSQEKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSQEKPR 7 2 P14868;H7C278 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 77.923 0.02066 162610000.0 426350.0 348470.0 329630.0 287690.0 292060.0 293350.0 383170.0 407100.0 576580.0 452670.0 False True 424054.57897193835 360068.61329543625 376039.03880467813 324111.52450247953 329252.1098247556 273071.40497162234 364634.60324845416 437479.8692119136 434489.5847761688 423780.2130497149 1.0006474250419786 0.8496588613805702 0.8873444942096999 0.7648104241819734 0.7769407341020191 0.6443703518068399 0.8604332907012763 1.0323272671548531 1.0252710518251533 1.0 18.692956702067892 1.8020431024488155 4.472876512907154 1.0213058412194245 0.816030509030626 0.5111615617236955 0.0867243671765755 0.17656918681442307 6.2847075900273985 0.045425885108320574 0.024737011176306563 63.39326240816337 -1.8020431024488155 -0.20527533218879845 KSS(ph)GTGTEPVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSGTGTEPVAK 12 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9;A0A0U1RR74 Q6ULP2-7 AFTPH Aftiphilin 1 KS(0.055)S(0.865)GT(0.048)GT(0.032)EPVAK;KS(0.006)S(0.99)GT(0.004)GTEPVAK 132.51 0.00019036 115440000.0 301440.0 261250.0 239540.0 228674.0 231520.0 320590.0 325690.0 277050.0 432750.0 327770.0 True False 299817.08053313213 269945.54832104006 273265.1498809953 257624.10495352626 261002.6996734492 298428.3678876856 309935.13044337806 297724.8778313945 326104.56105291063 306851.4379819847 0.9770756901283756 0.879727173828296 0.8905454433524236 0.8395727478019882 0.8505832704905647 0.972550006121224 1.010049463941487 0.9702573981382938 1.0627441187746896 1.0 18.22718081875505 2.5835492423136657 4.468622004926708 1.003113876948539 0.8850022681309135 0.6732932881774962 0.04073912880172831 0.14229877403075294 4.678999031870371 0.013823585207917786 0.012861652491336143 383.3091993031079 -2.5835492423136657 -0.1181116088176255 KSS(ph)LGNDETDKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSLGNDETDKEK 13 2 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 KS(0.102)S(0.898)LGNDETDKEK 126.63 0.00014671 430130000.0 155830.0 77701.0 74931.0 69490.0 61594.0 137430.0 133870.0 122480.0 209240.0 111700.0 True False 154991.02859434058 80287.2308137537 85480.63348807237 78287.4268750298 69437.63080375956 127929.78757542225 127394.19666693777 131620.07954083814 157675.60567235356 104571.21036881875 1.4821577377529915 0.7677756672279459 0.8174394576345189 0.7486518191662216 0.6640224451725827 1.2233748382964935 1.2182530566264196 1.2586645891982988 1.5078299764938896 1.0 16.674126190504563 2.632027285726546 6.997429261650805 1.2589165884282805 0.8770217834624064 0.34006613967673127 0.23971747750796019 0.2752023499874158 15.86660157608167 0.07673875536396002 0.07223458808657396 428.5754459642253 -2.632027285726546 -0.381894804965874 KSS(ph)LVTSK ddPTM_BT-474_Trastuzumab_2h_R1 4 KSSLVTSK 8 1 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7 A6NMQ3 ENSA Alpha-endosulfine 1 KS(0.007)S(0.857)LVT(0.053)S(0.083)K;KS(0.002)S(0.375)LVT(0.311)S(0.311)K;KS(0.02)S(0.968)LVT(0.011)S(0.001)K;KS(0.023)S(0.977)LVTSK 132.17 0.00080526 5398540000.0 9924820.0 6082280.0 5342640.0 5735350.0 3458710.0 6472630.0 7055330.0 7436040.0 11422900.0 10099140.0 True False 9871385.871871164 6284725.0129840905 6094837.272940638 6461444.721941321 3899156.217119712 6025192.323032123 6714036.73392207 7990955.064246027 8607879.354017999 9454604.238891242 1.044082398633409 0.6647263972332185 0.6446422419110575 0.6834177886962581 0.412408189554952 0.6372759949324656 0.7101340853913348 0.8451919152126393 0.910443117080431 1.0 23.172585638864753 1.534969863270971 1.7482966538503966 0.9708567050503774 0.6667609648508068 0.36837678575903043 0.14537216851655124 0.3597767772282552 2.174609185430097 0.12498751656653473 0.042233965751149474 34.274400189816774 -1.534969863270971 -0.30409574019957053 KSS(ph)PSKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSPSKDR 8 2 Q9BUQ8;F8VVA2;F8W1J5;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 KS(0.035)S(0.621)PS(0.344)KDR 67.749 0.045905 559930000.0 1112100.0 738090.0 634910.0 625510.0 661820.0 916740.0 958810.0 890980.0 1515200.0 948050.0 True False 1106112.5771659268 762656.8794651738 724299.8092633502 704699.5018650146 746098.8540855296 853367.9215738385 912428.6972901073 957469.451904767 1141799.2626397917 887544.6373335585 1.2462613491632486 0.8592884767535932 0.8160714163507955 0.7939876736590243 0.8406324850624155 0.9614929612302128 1.0280369672800995 1.0787845609447688 1.2864696766915158 1.0 19.7594601533109 2.0159525688837965 1.7171549000579585 1.1381601817395686 0.898847327192599 0.3060573338104915 0.1373524097863064 0.41939497307494444 2.3141217685146285 0.08523419808683182 0.042867799931009726 103.74151091891542 -2.0159525688837965 -0.2393128545469696 KSS(ph)PSSPAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSPSSPAVR 10 1 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 KS(0.155)S(0.8)PS(0.041)S(0.005)PAVR;KS(0.042)S(0.958)PSSPAVR 130.1 0.00017494 409570000.0 310800.0 293140.0 252760.0 274690.0 276260.0 340950.0 326180.0 302560.0 431490.0 329130.0 True False 309126.6873331265 302896.9876931279 288346.4109706958 309465.7258353998 311440.0734786932 317380.9290099699 310401.42727139586 325138.56356854935 325155.0711697753 308124.64161763067 1.0032520791269246 0.9830339634731646 0.9358109414972438 1.0043524082031496 1.0107600347822128 1.0300407242463454 1.007389170959558 1.055217660819326 1.0552712352466722 1.0 18.233154537917567 3.191972341346707 1.7979806576747224 1.033113484318719 0.9752523025854193 0.4920083111654078 0.023519880675097766 0.2720939878723672 1.8154732106139626 0.007864153742908966 0.010696318092915302 1555.8665409065711 -3.191972341346707 -0.057861181733299794 KSS(ph)TPEEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSTPEEVK 9 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 1 KS(0.22)S(0.39)T(0.39)PEEVK;KS(0.036)S(0.927)T(0.036)PEEVK 103.43 0.002097 1280000000.0 3052900.0 2174600.0 1920770.0 1822900.0 1604170.0 2307100.0 2807000.0 2476300.0 4240700.0 2688500.0 True False 3036463.525609073 2246980.2464265423 2191197.720367869 2053678.9530938515 1808451.5408394805 2147615.607329232 2671214.68621868 2661094.0803966136 3195636.3074686914 2516917.6282593473 1.2064214940991271 0.8927508080510809 0.8705877760025305 0.8159500056877654 0.7185183656924726 0.8532721068088679 1.061303976032796 1.0572829442324563 1.269662650691804 1.0 21.263226571184077 2.1477775813721287 4.2539828882613815 1.10281318887 0.880485116844662 0.35926774215035895 0.13365202976549334 0.24233219603658837 8.058604052254092 0.05398719179628938 0.03907399392674597 140.53276183816055 -2.1477775813721287 -0.2223280720253379 KSS(ph)TPEEVKK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSSTPEEVKK 10 2 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 1 KS(0.02)S(0.727)T(0.253)PEEVKK;KS(0.002)S(0.976)T(0.022)PEEVKK;KS(0.068)S(0.466)T(0.466)PEEVKK 107.37 0.0011963 835821000.0 2151230.0 1301770.0 1114590.0 1066250.0 1091269.0 1692400.0 1785340.0 1681260.0 3087790.0 1827840.0 True False 2139648.0167041244 1345098.6275134168 1271514.5838100482 1201237.1406749259 1230235.6386918824 1575408.371481076 1698976.283538886 1806724.158465294 2326845.528766183 1711185.6863074435 1.2503891505317912 0.7860623416129645 0.743060553851313 0.7019911107759834 0.7189375463668118 0.9206530793748279 0.9928649457120553 1.0558317387308283 1.3597855261326244 1.0 20.706564889162983 1.931257314956387 1.6233302764655306 1.1671534713583098 0.8286016085391371 0.3631216395412097 0.17098827582626874 0.3865401070888598 1.8979911428059704 0.11524142071597944 0.05315552988712802 85.36057167155893 -1.931257314956387 -0.3385518628191727 KSS(ph)TSDWPTDNQDGWDGKQENEER ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSTSDWPTDNQDGWDGKQENEER 24 2 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ISZ3;A5PLL3 A0A3B3IS53 KAT6A;MYST3 Histone acetyltransferase KAT6A;Histone acetyltransferase 1 KS(0.191)S(0.767)T(0.03)S(0.012)DWPTDNQDGWDGKQENEER 193.94 1.8734e-18 322500000.0 225350.0 180650.0 186040.0 184370.0 193290.0 253960.0 258680.0 257890.0 381440.0 287400.0 True False 224136.74063873893 186662.82604476914 212232.81491133175 207711.22309611793 217904.33578041205 236404.34295753646 246166.6601464364 277135.0613388857 287439.2230341355 269057.8859444808 0.8330428221865567 0.6937645606986089 0.7887998308108513 0.7719945556213077 0.8098790154969697 0.8786374802867429 0.9149208144645576 1.0300202142972 1.0683174069592134 1.0 18.037557066478584 2.2393375683294034 1.087402366588281 1.0467216560554586 0.7662990632259128 0.8877609380986075 0.03897890487058474 0.14157357133975276 0.32076482414716023 0.025577008320760066 0.014443650762792512 173.51521724708277 -2.2393375683294034 -0.28042259282954585 KSS(ph)TTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSSTTLR 7 1 Q9BZL6-2;Q9BZL6;Q9BZL6-3 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 KS(0.007)S(0.993)T(0.001)TLR;KS(0.003)S(0.992)T(0.003)T(0.003)LR;KS(0.017)S(0.97)T(0.006)T(0.006)LR 116.52 0.0033307 1690580000.0 1495520.0 1305030.0 1188770.0 1229940.0 1227570.0 937070.0 1384880.0 1309410.0 1776510.0 1619300.0 True False 1487468.2864878913 1348467.134642706 1356138.4830259278 1385650.2778914112 1383893.763122563 872292.5565255103 1317888.0636446453 1407124.823249255 1338712.9145143977 1515954.8876475233 0.9812088068109746 0.8895166641371982 0.8945770709116546 0.914044533371095 0.912885847988594 0.5754079911171659 0.869345172724605 0.9282102222928599 0.8830822905237162 1.0 20.531795391213404 5.571087625174562 0.8428731223908479 0.8602180209516944 1.3309370907190476 0.08579872212293627 0.10568566538477371 21.352040873891248 4.195248844457321 0.03574613101847837 13.007328651982233 372466.8492317959 -5.571087625174562 0.4707190697673532 KSS(ph)VNGSSATSSG ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 KS(0.035)S(0.518)VNGS(0.423)S(0.024)ATSSG;KS(0.473)S(0.518)VNGS(0.005)S(0.001)AT(0.002)SSG 124.86 0.00021916 2233580000.0 2773700.0 2525500.0 2377840.0 2242820.0 2324010.0 2315680.0 2963140.0 2636690.0 3576740.0 2789640.0 True False 2758766.70738704 2609559.7408030136 2712619.203444209 2526760.782038485 2619958.8980135317 2155602.492124383 2819801.597905953 2833453.1966405334 2695300.352860513 2611602.786869038 1.0563500396223853 0.9992177041331489 1.0386798547937974 0.967513434563199 1.0031996102877925 0.8253944677048923 1.0797207033488112 1.0849479908992838 1.0320483522273376 1.0 21.316504055415354 -0.35513398210929037 6.791662426220111 1.0000003672821978 1.0118659049017347 0.0008194608435754258 0.07072781804749546 0.0 0.0 0.07138471220500849 0.016825538024403872 0.4414342415819658 0.35513398210929037 0.011865537619536903 KSSEAS(ph)PTAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSEASPTAQR 11 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 KS(0.001)S(0.005)EAS(0.758)PT(0.236)AQR;KS(0.096)S(0.096)EAS(0.778)PT(0.031)AQR 67.095 0.026837 79356000.0 72741.0 77014.0 82234.0 78627.0 92125.0 88414.0 98403.0 85051.0 114932.0 101481.0 True False 72349.3705382848 79577.36443405382 93811.83240925858 88581.17013819214 103856.57268234478 82302.14828416929 93642.87095403505 91397.9375002271 86608.54860989742 95004.39569774488 0.7615370847519864 0.8376177107344386 0.9874472830469821 0.932390227711272 1.0931764990407704 0.8662983189326564 0.9856688237032579 0.9620390386041539 0.911626751307816 1.0 16.535706645673315 4.395434927009865 3.3472180749633162 0.9665200613462605 0.7717378862764303 0.5906984819117607 0.05726710108900483 0.14804394604957796 3.1682437701595347 0.013410246907765168 0.04832053500574544 24856.21100560241 -4.395434927009865 -0.1947821750698302 KSSGEIVYCGQVFEKS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSGEIVYCGQVFEKSPLR 19 2 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 1 KSSGEIVYCGQVFEKS(1)PLR;KSSGEIVYCGQVFEKS(1)PLR 178.95 1.9236000000000006e-14 2573600000.0 1497710.0 1229340.0 1233700.0 1000790.0 1148560.0 1657720.0 1484400.0 1384270.0 2256400.0 1714160.0 True False 1489646.4957712258 1270257.8387482783 1407394.2364873663 1127489.9113866908 1294822.307951522 1543125.7182531385 1412593.9010413287 1487571.2565806322 1700340.454210947 1604760.8412337892 0.9282669775428593 0.7915558543737055 0.8770118265132383 0.7025906181259022 0.8068631005203386 0.9615923311455782 0.8802519757120215 0.9269738009290792 1.0595600356896004 1.0 20.61392687671848 1.8428909264895388 0.9382760184755133 1.0220324930509208 0.823738222617925 0.5257829962844612 0.06909588545675827 0.441831323922107 0.7199330429866166 0.05967421949940389 0.026160261159053382 69.64515776064576 -1.8428909264895388 -0.19829427043299586 KSSS(ph)ISEEKGDS(ph)DDEKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSSISEEKGDSDDEKPR 18 3 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 KS(0.243)S(0.271)S(0.303)IS(0.183)EEKGDS(1)DDEKPR 64.289 0.052461 629170000.0 193790.0 139700.0 101910.0 92278.0 116020.0 186530.0 154760.0 160360.0 332840.0 174910.0 True False 192746.65617209286 144349.8300495666 116258.04218240066 103960.38533852338 130794.45929558371 173635.62014438972 147273.66755938812 172326.87749158044 250816.04182750042 163747.09405201513 1.177099705420518 0.8815413237422896 0.7099853762624372 0.6348838490257409 0.798758964565418 1.0603890172807184 0.8993971368591486 1.052396553900614 1.5317282012212527 1.0 17.321109778436842 1.5273795402998953 3.679338286504282 1.2754363140874836 0.869654886680159 0.38770722382106637 0.1910494993530535 0.18457167899875737 5.455741981367149 0.12652746123878308 0.05027254441819687 33.6805783398902 -1.5273795402998953 -0.4057814274073246 KSSS(ph)LESLQTAVAEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSSSLESLQTAVAEVR 16 1 R4GN62;A0A087WZG6;A0A087X1S9;Q8TEW8-5;Q8TEW8-2;Q8TEW8 R4GN62 PARD3B Partitioning defective 3 homolog B 1 KS(0.005)S(0.013)S(0.982)LESLQTAVAEVR;KS(0.083)S(0.083)S(0.834)LESLQTAVAEVR 218.88 7.9185e-15 568440000.0 161768.0 164100.0 155305.0 160918.0 167581.0 192631.0 178152.0 155683.0 213571.0 193432.0 True False 160897.05906211433 169561.96929945535 177170.59406474064 181290.20230070592 188921.44701959356 179314.87237459904 169534.10715327034 167300.85600225572 160939.28875478028 181087.00415453312 0.8885069351791285 0.9363563668807359 0.9783727710992979 1.0011221023127612 1.043263418607195 0.9902139207161338 0.9362025063300293 0.9238700302286033 0.8887401363017773 1.0 17.466323488341896 -0.2528909345175605 7.838267771165243 1.0000000000000213 0.9562014438972279 0.0771557577251838 0.04713676776310302 0.0 0.0 0.04990635253966427 0.011763040101694364 0.5586104623953325 0.2528909345175605 -0.04379855610279337 KSSSISEEKGDS(ph)DDEKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 KSSSISEEKGDSDDEKPR 18 3 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR;KSSSIS(0.001)EEKGDS(0.999)DDEKPR 185.84 2.8218e-13 3364140000.0 3879950.0 2062150.0 1681610.0 1603830.0 1610140.0 3129790.0 2975230.0 2845910.0 5601770.0 2751480.0 True False 3859060.7803029697 2130787.4161539995 1918366.0711838547 1806874.7135556065 1815181.7849525204 2913434.984033188 2831306.7584176683 3058286.2554381625 4221288.843372301 2575878.1907394594 1.49815344303806 0.8272081435428097 0.7447425418176112 0.7014596886030956 0.7046846358955486 1.1310453244673133 1.0991617416524198 1.187279067167465 1.6387765766829574 1.0 21.296632941592257 2.168290198737108 1.5889105471366987 1.29093651221477 0.8815915218094721 0.2577288297438677 0.26711793209659995 0.5011008154503775 2.4554025130373773 0.15569341056502345 0.08817552289774902 147.32966411419267 -2.168290198737108 -0.4093449904052979 KSST(ph)GSISNVLFSTQDPVEDAVFGEATNLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSTGSISNVLFSTQDPVEDAVFGEATNLKK 31 2 Q5VZ89-7;Q5VZ89-3;Q5VZ89;Q5VZ89-5;X6RAE7 Q5VZ89-7 DENND4C DENN domain-containing protein 4C 1 KS(0.176)S(0.176)T(0.216)GS(0.216)IS(0.216)NVLFSTQDPVEDAVFGEATNLKK 98.342 0.014082 329650000.0 268600.0 260550.0 220290.0 225120.0 215720.0 332200.0 320720.0 274850.0 390220.0 326100.0 True False 267153.88744426536 269222.2492441989 251304.91720499514 253620.16891792644 243190.66332738593 309235.79591468547 305205.54833062144 295360.70266002073 294055.5096801078 305288.0188117442 0.8750880184688996 0.8818631346624015 0.8231732060207784 0.8307570336532639 0.7965941941447412 1.0129313201294536 0.9997298600795285 0.9674821298576899 0.9632068458652389 1.0 18.219811445769714 2.734039847469664 24.998239194665608 0.9860194805739312 0.8421233395713718 0.8825881926427678 0.026830685802763165 134.56815318839176 744111.5664113897 0.00926769131419093 0.009017967105227318 542.0506224515833 -2.734039847469664 -0.14389614100255943 KSST(ph)PEEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 KSSTPEEVK 9 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 1 KS(0.005)S(0.292)T(0.703)PEEVK;KSS(0.036)T(0.964)PEEVK;KSS(0.037)T(0.963)PEEVK;KS(0.078)S(0.23)T(0.692)PEEVK 140.16 6.4316e-05 3028270000.0 6591840.0 4563850.0 4131980.0 3730990.0 3788360.0 5110280.0 6081270.0 5520880.0 9056680.0 5655170.0 True False 6556350.265862267 4715754.98834442 4713726.868186011 4203332.951452973 4270785.1906310795 4757018.371905174 5787095.7373926155 5932876.100060589 6824782.567294452 5294252.208965381 1.238390240411975 0.8907310800869435 0.8903480004605188 0.7939427109904161 0.8066833656694435 0.8985250766575787 1.0930903003813541 1.1206258912285574 1.2890928308510208 1.0 22.33599549327661 2.1585556655397298 3.7732804272778493 1.1410958140915184 0.905604450099863 0.36566109701870186 0.13271571205280208 0.23501855414426512 6.539791818060519 0.053648189895041255 0.03849784716533578 144.06406520127146 -2.1585556655397298 -0.23549136399165538 KSSTPEEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 KSSTPEEVK 9 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ;; 175.33 8.6586e-05 15785600000.0 12028700.0 10980500.0 10395090.0 9091310.0 7969460.0 10879820.0 12932980.0 10780950.0 18167600.0 11551390.0 False True 11963938.815714214 11345979.304647591 11858628.316257982 10242268.913846988 8984323.492309788 10127723.651741456 12307362.348618621 11585479.233554853 13690438.413367651 10814170.400557471 1.106320538013482 1.049177041270101 1.0965823430752182 0.9471155469604028 0.830791744491713 0.9365234018523854 1.1380773459963398 1.0713239022900565 1.2659721371379453 1.0 23.366419658692337 -0.09353175277221266 7.603902366724744 0.9999999575042069 1.043646329335501 0.014207699539823038 0.11487971293805496 0.0 0.0 0.11700543090674789 0.027578444543271834 0.8062472516735948 0.09353175277221266 0.04364637183129405 KSSTPEEVKK ddPTM_BT-474_Trastuzumab_2h_R1 4 KSSTPEEVKK 10 2 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ;;; 101.56 0.0018289 9695140000.0 5086730.0 4003240.0 3604090.0 3485690.0 3220880.0 4653100.0 5073700.0 4070680.0 6908670.0 4280230.0 False True 5059343.610868828 4136485.423390314 4111514.5446881447 3926977.9966041488 3631039.9763485566 4331442.14921922 4828265.7475837935 4374454.812094204 5206120.849935092 4007062.05691073 1.2626067525316444 1.0322988175978896 1.0260671001082382 0.9800142700139957 0.9061601554401506 1.0809521009910619 1.2049390997718104 1.0916863153017196 1.2992363921483123 1.0 21.934113422118614 2.4692940183217837 19.741044067415366 1.150323118269604 1.0323467220240479 0.17091977506828315 0.11086669285545127 23.01373818684906 58034.35463632482 0.03765147175024553 0.031634885424230666 294.64156886503264 -2.4692940183217837 -0.11797639624555623 KSSVNGS(ph)SATSSG ddPTM_BT-474_Trastuzumab_2h_R1 1 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 KS(0.008)S(0.436)VNGS(0.507)S(0.034)AT(0.002)S(0.006)S(0.006)G 113.96 0.00082693 1486800000.0 901930.0 885000.0 804850.0 748200.0 789310.0 820810.0 1015000.0 905640.0 1159500.0 992550.0 True False 897074.1090938423 914456.6900062029 918165.8841183899 842922.0432853253 889823.949893098 764069.3366789079 965900.572323462 973223.4555467372 873756.7615039845 929204.6092351923 0.9654215015487322 0.9841284480485648 0.9881202428323207 0.9071436311310549 0.9576189582459049 0.8222831969245141 1.039491800539467 1.047372608652658 0.9403276230228284 1.0 19.82563678495919 KSTLT(ph)PTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSTLTPTQR 9 1 O75376;O75376-2;A0A088AWL3;E7EVK1 O75376 NCOR1 Nuclear receptor corepressor 1 1 KS(0.165)T(0.165)LT(0.669)PT(0.001)QR 75.416 0.074132 57821000.0 75387.0 73319.0 66209.0 61008.0 61124.0 76532.0 75866.0 72659.0 98391.0 88642.0 True False 74981.12476828309 75759.37859272858 75530.65170105551 68731.60654470873 68907.77908966792 71241.52297694983 72196.07174373568 78081.18353492599 74143.85642185311 82984.79166976569 0.9035526059602241 0.9129308764696268 0.9101746257510219 0.8282434065536143 0.8303663563304874 0.8584889055388886 0.8699916007626645 0.94090955660462 0.8934631868078348 1.0 16.340559342599256 0.8726536352724856 0.8733406861672476 0.9971735443293017 0.8738929332431981 0.5394587201048475 0.033488996127739194 0.6292397107866422 0.9936742050358178 0.03539277560157846 0.012248628928568329 7.458536772834937 -0.8726536352724856 -0.12328061108610366 KSTSFMSVS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KSTSFMSVSPSK 12 1 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 1 KSTSFMS(0.003)VS(0.979)PS(0.018)K;KSTSFMS(0.006)VS(0.994)PSK 170.11 2.5737e-05 1674650000.0 1942070.0 1706740.0 1582610.0 1467220.0 1557520.0 2416350.0 2137790.0 2070350.0 3332720.0 2276510.0 True False 1931614.1109042633 1763547.809153884 1805427.7317072838 1652969.9015625434 1755860.9398556948 2249313.411976073 2034376.9305491354 2224850.030024283 2511415.812160033 2131221.182781732 0.9063414564897784 0.8274823014155902 0.8471329706618187 0.7755975376544628 0.8238755104544775 1.0554105928321356 0.9545592672337309 1.0439320179430385 1.1783928540359474 1.0 21.02324889625209 2.7394612224642714 24.996914224843877 1.0410307354451038 0.8328612233865119 0.7478568362404847 0.061021489005282994 41.927366194939474 1163734.3413745374 0.019435765973222996 0.019564983278776184 548.8595465319264 -2.7394612224642714 -0.2081695120585919 KSYESSEDCSEAAGS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR 220.69 4.0694e-19 1722130000.0 998660.0 928210.0 902750.0 972090.0 864380.0 1377980.0 1408050.0 1092240.0 1614810.0 1401440.0 True False 993283.325521556 959104.9087352062 1029849.3531563346 1095156.4943293666 974453.6694183475 1282723.4860160095 1339937.24222665 1173748.4950823395 1216861.7128454063 1311998.899366853 0.7570763405372494 0.7310256961328648 0.7849468118100719 0.8347236379983773 0.7427244564676093 0.9776864040320679 1.0212944865070233 0.8946261278487119 0.9274868396861017 1.0 20.32333507900681 2.7368209452332497 24.99991087203063 0.9573215954787405 0.7723437173095715 0.8390746055420235 0.04244668046783077 65.9838320097543 948211.7328719602 0.014269825901999452 0.014107225248675165 545.5328975957307 -2.7368209452332497 -0.184977878169169 KSYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 KSYSPR 6 1 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 KS(0.021)Y(0.046)S(0.933)PR 60.973 0.07728099999999999 319500000.0 793950.0 839710.0 817870.0 736020.0 646250.0 757050.0 1073000.0 827000.0 1225800.0 1068600.0 True False 789675.4614161373 867659.2397345856 933018.9869465219 829200.0565341692 728546.10687615 704716.9154040127 1021094.8907419447 888714.939420909 923718.0148784687 1000401.033125513 0.789358902348377 0.8673114191253807 0.9326449654210451 0.8288676531485905 0.7282540528771572 0.7044344138692997 1.0206855620208415 0.8883586781636285 0.9233477218556376 1.0 19.932147021844024 2.2293627428469533 24.999978661680938 0.9448868001811616 0.8140769176005872 0.5160592924312513 0.07039276630842768 198.9326271262149 540698.0051125964 0.02854990285072154 0.021376777441545147 169.5753580959024 -2.2293627428469533 -0.13080988258057435 KT(ph)ASFGNILDVPEIVISGNGQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTASFGNILDVPEIVISGNGQPR 23 1 O43318;O43318-3 O43318 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 KT(0.5)AS(0.5)FGNILDVPEIVISGNGQPR;KT(0.582)AS(0.418)FGNILDVPEIVISGNGQPR 201.1 1.3579e-24 1047180000.0 1286660.0 633790.0 631730.0 719890.0 582510.0 613480.0 522530.0 756280.0 1170770.0 1002590.0 True False 1279732.7655213634 654885.3170158552 720672.0929044058 811028.0001880163 656689.195692729 571071.5715765838 497253.2276415555 812717.4539120254 882249.4210142489 938603.8478395166 1.3634429141400382 0.6977228130092091 0.7678128473085346 0.864079134189408 0.6996446873772143 0.6084266252381976 0.5297796602753501 0.8658790988154831 0.9399593055632739 1.0 19.84015684919422 4.742132930840486 24.909125916471414 0.7593894954981963 1.3634431552108426 0.6127164743106972 0.13991157393853604 217.76295555352544 1518354.3054620107 0.033687798355946534 0.2487023776366295 55224.64475313959 -4.742132930840486 0.6040536597126462 KT(ph)GSYGALAEITASK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTGSYGALAEITASK 15 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8;H0YHI8;H0YIS4;A0A3B3ISH4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 KT(0.5)GS(0.5)YGALAEITASK 222.06 8.507e-13 603350000.0 2945600.0 847300.0 641920.0 1058300.0 268180.0 348390.0 443730.0 823390.0 2345500.0 1144200.0 True False 2929741.216886926 875501.8682963337 732296.7563313377 1192280.6714900564 302331.13337260496 324306.6193218461 422265.0846867884 884835.5428897014 1767482.9530897776 1071176.1764010966 2.7350694324907194 0.8173276138737671 0.6836380162894258 1.113057494889256 0.2822422119098722 0.3027574982216661 0.39420694185479466 0.8260410961178614 1.6500394538535297 1.0 20.03076434905516 1.2676306560500026 23.16750913936194 1.3250191741813944 0.8278875628627724 0.05258633419905456 0.6864716030373029 217.85978835627768 173625.42776993584 0.455425555157814 0.16621777102947966 18.51955965195349 -1.2676306560500026 -0.49713161131862194 KT(ph)NHSSPEAQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTNHSSPEAQSK 12 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6 O95819-3 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 KT(0.333)NHS(0.333)S(0.333)PEAQSK 75.383 0.025882 60824000.0 111180.0 104270.0 103140.0 93837.0 94293.0 108720.0 136070.0 116210.0 177010.0 136990.0 True False 110581.4192332592 107740.56391745387 117661.21549104912 105716.7545786755 106300.65463160223 101204.44229935171 129487.77426212162 124882.1803024231 133388.25731247987 128247.18091696031 0.8622522416680672 0.8401008361128467 0.91745654485173 0.8243202994623859 0.8288732264643821 0.789135804590366 1.009673455091107 0.9737616016938725 1.0400872468210307 1.0 16.968567587818292 2.227657993721267 24.99998183725585 1.0007005869291763 0.8453258077654376 0.8429002257157598 0.03426940309210118 84.09891601767234 192839.5093264955 0.013116809973263472 0.009781698497080394 168.91102358745852 -2.227657993721267 -0.15537477916373865 KT(ph)PESFLGPNAALVDLDSLVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 KTPESFLGPNAALVDLDSLVSR 22 1 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 KT(1)PESFLGPNAALVDLDSLVSR;KT(0.999)PES(0.001)FLGPNAALVDLDSLVSR;KT(1)PESFLGPNAALVDLDSLVSR;KT(0.99)PES(0.01)FLGPNAALVDLDSLVSR 285.35 3.0899000000000002e-46 1321985000.0 470692.0 351978.0 342936.0 318922.0 343921.0 460240.0 398138.0 394776.0 530879.0 398422.0 True False 468157.846570797 363693.3749548058 391218.4079468527 359297.49250019045 387717.3007705266 428424.6920884256 378878.54390514124 424236.18975190964 400050.98386414343 372994.3668537643 1.255133825531318 0.9750639882917991 1.0488587568943992 0.9632786026526138 1.0394722688199056 1.1486090143993872 1.015775511842204 1.13737961602577 1.0725389427154188 1.0 18.5087943167846 KT(ph)S(ph)TLQTVRIER ddPTM_BT-474_Trastuzumab_2h_R1 1 KTSTLQTVRIER 12 2 Q8N5I9;J3KN91;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 2 KT(0.638)S(0.724)T(0.638)LQTVRIER 72.681 0.04551 1429600000.0 1101700.0 1055800.0 1052100.0 1045100.0 973390.0 1193900.0 1188600.0 1080500.0 1595700.0 1320500.0 True False 1095768.569610378 1090941.6647554236 1200226.5349828657 1177409.5528434832 1097345.4467654575 1111368.5031383007 1131102.8771070614 1161132.3966678276 1202461.1162845264 1236224.559463071 0.8863831099475187 0.882478556508578 0.9708806751939629 0.9524236869674124 0.8876586687794548 0.8990021227381222 0.9149655444463367 0.939256858941665 0.9726882604619916 1.0 20.2375094010757 1.2355026716943696 1.7254502644349294 0.9989201600004606 0.9143237918864928 0.5389061607071757 0.027262501961278704 0.28343296983422184 1.5228596547449134 0.02715057765785414 0.008060711035543417 17.198979216799717 -1.2355026716943696 -0.08459636811396776 KT(ph)SDANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 4 KTSDANETEDHLESLICK 18 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 KT(0.498)S(0.498)DANET(0.004)EDHLESLICK;KT(0.497)S(0.497)DANET(0.006)EDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK 270.34 4.7678e-39 4905030000.0 2469530.0 2141560.0 2046600.0 1758038.0 1782810.0 2317950.0 1834260.0 1720490.0 2633600.0 1790510.0 True False 2456234.324870576 2212840.5299996436 2334743.4906339054 1980605.4305443023 2009840.2859572454 2157715.572367387 1745529.8362463373 1848881.7002712002 1984584.5684319912 1676238.1188672653 1.4653254195951593 1.3201230213610657 1.3928471524150947 1.1815776101564355 1.1990183634025786 1.287236907501832 1.0413376337163223 1.102994663741808 1.1839514601738648 1.0 20.676795675704767 7.999999999999999 0.18271074207326785 0.9911209051448149 3.039981594348627 0.7650008130989876 0.06885863387796999 24.90730174939908 0.2830256390726835 0.14651805511669522 14.246906379065068 99999999.99999979 -7.999999999999999 2.0488606892038117 KT(ph)SLFEEDEEDDLFAIAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KTSLFEEDEEDDLFAIAK 18 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 KT(0.5)S(0.5)LFEEDEEDDLFAIAK;KT(0.5)S(0.5)LFEEDEEDDLFAIAK;KT(0.5)S(0.5)LFEEDEEDDLFAIAK 153.83 1.7822e-08 199861000.0 132388.0 112854.0 109680.0 105318.0 109123.0 137302.0 124524.0 127551.0 153417.0 131943.0 True False 131675.23771768968 116610.27716831645 125121.99064435008 118651.24800150208 123019.1672273054 127810.6359141427 118500.29839212501 137069.50331085408 115609.43603247673 123522.28477791451 1.0660039032991795 0.9440424242311788 1.0129507470600285 0.960565522365699 0.9959269086423257 1.0347172264821556 0.9593434788320284 1.1096742871725263 0.9359399094692541 1.0 16.914411817771388 2.8873258141333182 7.269177752545363 1.0183640708127573 0.9915870401465685 0.0 0.05332743600220303 0.8666188776153994 50.07273987909482 0.015591246457503634 0.016574623959637262 771.4820292254941 -2.8873258141333182 -0.02677703066618875 KT(ph)SPASLDFPESQK ddPTM_BT-474_Trastuzumab_2h_R1 5 KTSPASLDFPESQK 14 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KT(0.5)S(0.5)PASLDFPESQK;KT(0.5)S(0.5)PASLDFPESQK;KT(0.5)S(0.5)PASLDFPESQK;KT(0.678)S(0.321)PASLDFPESQK;KT(0.5)S(0.5)PASLDFPESQK 220.64 2.6742e-12 6366020000.0 4739520.0 3740730.0 3536390.0 3073160.0 3340100.0 4975470.0 4656170.0 4405190.0 7724810.0 5155640.0 True False 4714002.950930178 3865237.9367309674 4034282.973147084 3462221.7409018064 3765441.936676256 4631527.469896565 4430933.268803286 4733927.646901568 5821134.082650795 4826602.64123453 0.9766710254243031 0.8008195876141839 0.8358431951040433 0.7173206493783902 0.7801433464829716 0.9595833372170721 0.918023213874917 0.9807991249287392 1.2060520650529225 1.0 22.20257662852488 1.9023380188231598 1.2266599507030085 1.0881232560071048 0.8243006075622054 0.5710206387105947 0.08752270377253245 0.32640292779414964 0.9079771575999769 0.06793631379664541 0.0294480785811069 79.86160219478052 -1.9023380188231598 -0.26382264844489944 KTAHNSEADLEESFNEHELEPS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTAHNSEADLEESFNEHELEPSSPK 25 1 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 KTAHNSEADLEESFNEHELEPS(0.57)S(0.43)PK 136.0 1.6098e-05 116990000.0 68294.0 82847.0 87592.0 89838.0 96687.0 129110.0 99097.0 119680.0 144760.0 127620.0 True False 67926.31269217667 85604.51231293089 99924.19223668765 101211.48158870223 108999.51634125241 120184.9295922488 94303.29952269775 128611.12932272592 109085.83768461988 119475.18233902095 0.5685391004420484 0.716504554644837 0.8363594035215137 0.8471339370004566 0.9123193135789244 1.0059405412850837 0.789312873824324 1.0764673198638102 0.9130418179658398 1.0 16.866351443815713 5.331038281710635 0.5095405415947668 0.9733465074153036 1.794875656797282e-14 0.7552907500394758 0.07067853363712888 3.452636084629835 0.43939517988570753 0.037482120718264136 2.2784846547544255 214307.94986007744 -5.331038281710635 -0.9733465074152856 KTAPTLS(ph)PEHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTAPTLSPEHWK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KTAPT(0.013)LS(0.986)PEHWK;KTAPT(0.041)LS(0.959)PEHWK 164.41 2.6976e-05 1494970000.0 3856200.0 3550200.0 3187500.0 3043800.0 3102400.0 4102300.0 4066600.0 3453000.0 5920500.0 4397000.0 True False 3835438.647664093 3668366.260858776 3636272.293753335 3429144.767912157 3497472.250634539 3818717.6567754815 3869883.0220793965 3710680.393978723 4461472.105635485 4116379.6955389115 0.9317504533949369 0.8911632386182291 0.8833665897473236 0.8330487033614661 0.8496476295480935 0.9276883910670295 0.9401180912133413 0.9014426919849349 1.0838339598435403 1.0 21.97294463212126 1.2507782275823587 24.51123673133435 1.0419169514138282 0.8944353789170408 0.7113483377730696 0.037491000306058 82.76644475855649 166050.55588185485 0.02694596224623574 0.009672680655679045 17.814688283247772 -1.2507782275823587 -0.1474815724967874 KTDAPQPDVK ddPTM_BT-474_Trastuzumab_2h_R1 4 KTDAPQPDVK 10 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 0 ;;; 87.618 0.020449 676980000.0 1610680.0 1726620.0 1896620.0 1135970.0 1981090.0 2631450.0 1760300.0 1764430.0 2582600.0 2059960.0 False True 1602008.2778433708 1784089.502936171 2163647.610283435 1279783.685526371 2233370.0686596083 2449544.055267009 1675147.5640009767 1896100.726193999 1946152.8350670033 1928491.5891795168 0.8307053485905793 0.925121744344873 1.121937799689324 0.6636190132780715 1.1580916822197824 1.2701865380233137 0.8686309929480552 0.9832040423887466 1.00915806218009 1.0 20.879041423211273 KTDVKEEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTDVKEEDK 9 2 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 0 65.5 0.037336 134530000.0 264410.0 154110.0 144310.0 106850.0 116490.0 174920.0 233590.0 210890.0 380450.0 210880.0 False True 262986.44593871286 159239.45818853768 164627.59363499412 120377.19904442273 131324.31100967556 162828.19211738947 222290.35929954416 226627.68267772123 286693.1952688154 197421.4578565486 1.3321066959692165 0.8065965063648 0.8338890585774961 0.6097472906511097 0.6651977573030542 0.8247745401399301 1.1259685837243991 1.147938451768473 1.4521886241825541 1.0 17.590919280141936 2.161807690281807 3.429069477853923 1.201796970192526 0.8224493573348299 0.38298347717339243 0.20909029812923352 0.2437257198419165 5.719181054427583 0.08688660310907922 0.061550027029249124 145.14687511266172 -2.161807690281807 -0.379347612857696 KTEAAATTR ddPTM_BT-474_Trastuzumab_2h_R1 4 KTEAAATTR 9 1 E7EVA0;P27816-4;B5MEG9;P27816-6;P27816;P27816-2 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 0 ;;; 156.51 0.0002044 611380000.0 696860.0 812620.0 760150.0 663440.0 674090.0 643410.0 810130.0 738370.0 948750.0 870200.0 False True 693108.1831884254 839667.5654608371 867172.5126577547 747431.4359759649 759931.3658555418 598932.5811242262 770940.9169028631 793470.9187668882 714943.2750986689 814663.0909842977 0.8507911931434056 1.0306930248261625 1.0644553831572432 0.91747305634394 0.9328167364712355 0.7351905195564707 0.9463309746503817 0.9739865811377258 0.877593796761868 1.0 19.635844021561777 5.111516273884554 8.804459524316606 0.9395126911067155 7.217829489346216e-05 0.0903029647878657 0.08656252535727253 19801.61849795741 60253.657616125216 0.021603759499632887 328355.310540871 129275.51420249895 -5.111516273884554 -0.9394405128118221 KTEAPAAPAAQETK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTEAPAAPAAQETK 14 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 112.34 0.00096103 78728000.0 174220.0 138940.0 168140.0 130730.0 139820.0 192580.0 178050.0 162900.0 255700.0 179080.0 False True 173282.01887766164 143564.53390899635 191812.6505009208 147280.40459595123 157625.2482219317 179267.3978845581 169437.0412829482 175056.42518943924 192686.1612044581 167650.96108189854 1.033587983984251 0.8563299189132842 1.144119003333474 0.8784942456965924 0.9401988942069397 1.0692894137182123 1.01065356374651 1.0441719156260791 1.1493292967782613 1.0 17.35510122803743 2.733541981254016 24.59313537440262 1.052596819446036 0.9687296274511155 0.19967442325779194 0.0841371616111746 549.0330179945878 2690457.8726969506 0.02559626322618159 0.02480530651585677 541.4295828655967 -2.733541981254016 -0.08386719199492054 KTEEIAQER ddPTM_BT-474_Trastuzumab_2h_R1 2 KTEEIAQER 9 1 Q9NQT8;E7ERX9;A0A1B0GUA8;Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9 Q9NQT8;A0A1B0GUA8 KIF13B;KIF13A Kinesin-like protein KIF13B;Kinesin-like protein;Kinesin-like protein KIF13A 0 ; 122.7 0.00092753 456180000.0 556530.0 611360.0 557440.0 499100.0 540470.0 616930.0 632710.0 516750.0 701160.0 592940.0 False True 553533.7043162955 631708.7480250752 635922.7066446609 562286.0088261245 609295.6508833311 574283.0811970107 602103.4001130818 555312.5090033313 528368.5130626423 555098.0615585266 0.997181836236576 1.1380128877615818 1.1456042646937123 1.0129489684172497 1.0976360630275597 1.0345614963680816 1.0846793419212817 1.0003863235339043 0.9518471593634523 1.0 19.08238312955255 1.6301130648569289 3.7656662851762666 0.9756317092043753 1.0755194261926533 0.42894243938264087 0.047323364398877195 0.16291961428553048 5.414838378663667 0.027584156300514726 0.012233896523365928 42.66905895913474 -1.6301130648569289 0.09988771698827803 KTEELEEESFPER ddPTM_BT-474_Trastuzumab_2h_R1 2 KTEELEEESFPER 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ; 222.55 2.7686e-11 2745200000.0 2910900.0 2862600.0 2434900.0 2488800.0 2551300.0 2996100.0 2950400.0 2960900.0 3963700.0 3135500.0 False True 2895228.03783139 2957879.9105217573 2777712.7554698004 2803881.8248175844 2876192.932260153 2788986.659060776 2807677.880377483 3181857.3931455547 2986899.2458588555 2935389.705563394 0.9863181138586518 1.0076617441683255 0.9462841510295035 0.9551991749182179 0.9798334193272374 0.9501248347961625 0.9564923781861534 1.0839642133768592 1.017547768937745 1.0 21.48512061915394 1.7544810186269342 24.99999999999995 1.0408737815705995 0.9686477987579327 0.5476871491106317 0.026838135082265194 3.6880821578139154 5798.390939469013 0.012161921506800366 0.006744454002147606 56.817355829490076 -1.7544810186269342 -0.07222598281266679 KTEFLDLDNSPLSPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTEFLDLDNSPLSPPSPR 18 1 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 KTEFLDLDNSPLS(0.059)PPS(0.941)PR;KTEFLDLDNSPLS(0.007)PPS(0.993)PR 187.26 2.6855000000000003e-14 402350000.0 624950.0 657900.0 591290.0 547910.0 579930.0 732530.0 720160.0 606680.0 859030.0 715580.0 True False 621585.3386384725 679797.8037910517 674538.4924151873 617275.3498215216 653780.6479855869 681891.9252901413 685323.1095216395 651953.5422586179 647333.5669122621 669911.0717611393 0.9278624653931714 1.014758275309469 1.00690751481668 0.9214287923302373 0.9759215447310836 1.0178842446916205 1.0230060950030029 0.9731941592556269 0.9662977583136179 1.0 19.353610070239675 2.976493963190744 24.21105116673834 0.9951223588457918 0.9707429590604966 0.15032773046432568 0.03185427450229252 1173.8705976259942 1209080.7146042043 0.010039079973820276 0.010710586178871287 947.3140164949665 -2.976493963190744 -0.02437939978529524 KTEITDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTEITDK 7 1 Q9Y265;H7C4G5;Q9Y265-2;E7ETR0;H7C4I3 Q9Y265 RUVBL1 RuvB-like 1 0 102.61 0.013729 472680000.0 355600.0 374350.0 307820.0 324720.0 426270.0 545890.0 623070.0 640040.0 956080.0 670270.0 False True 353685.48911087454 386810.01345064613 351158.3803805963 365829.5187057084 480552.957799763 508153.90918683866 592929.7237414585 687803.0348572653 720466.8948156353 627492.7947529819 0.5636486857990234 0.6164373785406051 0.5596213746467527 0.5830019432330222 0.7658302403120613 0.8098163252804806 0.9449187762783325 1.0961130400358223 1.1481675978434995 1.0 19.25923936770927 2.4910525637080028 1.0190811307684162 1.102767850770891 0.5752724135606324 0.9431697422469792 0.05139687437608314 0.10727583643936989 0.22500403124681131 0.03192347773142724 0.022866817353794783 309.77942100283525 -2.4910525637080028 -0.5274954372102585 KTENWLSEWWLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTENWLSEWWLK 12 1 P43155-2;P43155;P43155-3 P43155-2 CRAT Carnitine O-acetyltransferase 0 ; 172.57 5.6755e-05 1226210000.0 1698250.0 1869310.0 1936500.0 1700270.0 1833670.0 2531450.0 2214020.0 1855010.0 2531280.0 2044350.0 False True 1689106.8106933145 1931528.8533282417 2209142.367640259 1915524.007667389 2067177.0054864096 2356456.8198923278 2106919.3942222605 1993440.265749915 1907479.9614142363 1913877.832743909 0.8825572781057074 1.0092226474868704 1.1542755393498823 1.0008601253932283 1.08009872423399 1.2312472507787486 1.100864098102641 1.0415713227066004 0.9966571161334263 1.0 20.868067311520303 4.614212307968392 3.302768164162881 1.0797100329727836 0.8777569916010635 0.4038816823011935 0.07107706940622116 0.26288314004898805 4.64503308898253 0.017673556806985607 0.10988092131231761 41135.07637273682 -4.614212307968392 -0.2019530413717201 KTEPATGFIDGDLIESFLDISR ddPTM_BT-474_Trastuzumab_2h_R1 1 KTEPATGFIDGDLIESFLDISR 22 1 Q16531;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 106.69 0.00032691 0.0 70351.0 69960.0 65335.0 55989.0 64476.0 75664.0 67480.0 58487.0 85310.0 74061.0 False True 69972.23803273088 72288.57630828701 74533.60009799965 63077.2016593185 72686.63642080728 70433.52577389756 64215.73460136667 62851.596930968255 64286.493595433356 69334.36357318789 1.0091999756927121 1.0426082044004157 1.0749878740766625 0.9097538133848383 1.048349370714001 1.01585306540745 0.9261747175854855 0.9064999473835718 0.927195264835364 1.0 16.08128293925827 2.240349538659477 24.065092286685026 0.929210488158597 1.0171798412903066 0.3826371137782393 0.047016912933178265 26.64126124360133 358394.4450493867 0.01649955608258024 0.013137747324768217 173.92000477245188 -2.240349538659477 0.08796935313170962 KTEPATGFIDGDLIESFLDISRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTEPATGFIDGDLIESFLDISRPK 24 2 Q16531;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 252.04 5.356399999999999e-44 656980000.0 488890.0 468220.0 428470.0 401020.0 347770.0 527040.0 528930.0 503440.0 705820.0 535010.0 False True 486257.8705607859 483804.4196550331 488794.8516719974 451789.0908824928 392056.448105716 490606.9653187112 503343.63519118173 541009.2492165206 531880.1185034433 500865.20375489426 0.970835799563236 0.9659373740240695 0.9759009969300969 0.9020173242132077 0.7827584051887433 0.9795189636667132 1.004948300296581 1.0801493997999339 1.0619226780300088 1.0 18.934062862207547 2.243023089051887 2.8045682304026407 1.0516584374744369 0.9221954956490355 0.476993937779998 0.05715968237402878 0.23042852791221516 3.733335675920046 0.02534726515231497 0.018381110092881014 174.9939720833619 -2.243023089051887 -0.1294629418254014 KTES(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTESPIK 7 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 KT(0.003)ES(0.997)PIK;KT(0.001)ES(0.999)PIK 62.466 0.052239 1271500000.0 3798800.0 2367300.0 2135600.0 1757760.0 1537010.0 2202400.0 3019700.0 2719600.0 5323100.0 3070100.0 True False 3778347.6828863528 2446094.149436931 2436273.9170320374 1980292.235772808 1732739.1129279875 2050153.2718919457 2873625.5746257706 2922550.361848979 4011293.330885608 2874163.58955515 1.3145903373826917 0.8510629521319372 0.8476462251089587 0.6889977463249782 0.6028672547466837 0.7133043085446849 0.9998128099140444 1.0168350794191634 1.395638489563657 1.0 21.45471074772461 1.7159882960820654 2.169766745039045 1.1871781894247073 0.8259955033479296 0.29959234137609825 0.20591937163572757 0.3348260472661948 3.3000033948413674 0.14323120164206193 0.05952457194779446 51.99819832114095 -1.7159882960820654 -0.3611826860767777 KTES(ph)PIKLSPATPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KTESPIKLSPATPSR 15 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 KT(0.018)ES(0.982)PIKLSPATPSR 116.39 0.00023613 799990000.0 664250.0 558360.0 565420.0 538880.0 557980.0 797200.0 745440.0 776850.0 1385000.0 858200.0 True False 660673.7518051136 576944.6750642518 645026.221281258 607102.1527473889 629035.4455934312 742091.4404069458 709380.2193426625 834822.4917643691 1043685.308049177 803428.9412580137 0.8223175913611313 0.7181029278841616 0.8028416555063006 0.7556388892299359 0.7829384943595433 0.9236553505839292 0.882940833861313 1.0390744581060263 1.2990387257085467 1.0 19.61581090576963 1.8949229092097117 1.2995713565989444 1.1473629462218173 0.7807985104629496 0.740395791360783 0.08410188233089713 0.20533793660884428 0.6434318436555208 0.061437193185206546 0.026544728712819522 78.50962612912795 -1.8949229092097117 -0.36656443575886777 KTESASVQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTESASVQGR 10 1 Q9P2E9;A0A087WVV2;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ; 106.67 0.0038259 274490000.0 252562.0 246222.0 208268.0 201769.0 221824.0 251627.0 271158.0 231004.0 312646.0 248281.0 False True 251202.23425427589 254417.35042565802 237590.32410209213 227312.93471215846 250071.97154614356 234232.61775624478 258041.0516158475 248242.69149454398 235598.58254176367 232435.4940159414 1.080739563110991 1.0945718574642864 1.0221774652273943 0.9779613723563596 1.075876868999158 1.00773170959931 1.1101619944419934 1.068006814301427 1.0136084574312274 1.0 17.826470866461527 4.247415867645657 24.98059718707794 1.0407801337433524 1.0876557302228005 0.22298354962372113 0.03829929212290883 318.69236024978983 899008.0348107164 0.009622431141844436 0.025534671703814623 17677.297365903334 -4.247415867645657 0.046875596479448056 KTESHHK ddPTM_BT-474_Trastuzumab_2h_R1 3 KTESHHK 7 1 A0A0U1RR32;A0A0U1RRH7;P20671;Q7L7L0;P04908;Q99878;Q96KK5;Q6FI13;P0C0S8 A0A0U1RR32;Q7L7L0;Q99878 HIST1H2AD;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG Histone H2A type 1-D;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1 0 ;; 74.127 0.030526 126673000.0 153874.0 206450.0 222650.0 243490.0 264039.0 864110.0 251431.0 155728.0 303806.0 194492.0 False True 153045.55948100847 213321.5634483396 253997.18469150714 274315.809034408 297662.80156823486 804376.1095961441 239268.3219703056 167349.21413076128 228937.08209183227 182079.3540470215 0.8405431811971656 1.171585677930568 1.3949806996015213 1.5065728372672427 1.6347971087999589 4.417722777006426 1.3140881525124215 0.9191004384140323 1.2573478376505547 1.0 17.47420781903263 4.108016827093048 1.518561696896703 1.7562457779660512 0.8968145081486703 0.08982999733128783 0.9417914276256796 1.3068232229645866 5.416068514774667 0.29174870435858496 1.1883892855830678 12823.802685603197 -4.108016827093048 -0.8594312698173809 KTET(ph)QEKNPLPSK ddPTM_BT-474_Trastuzumab_2h_R1 4 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 KT(0.037)ET(0.963)QEKNPLPSK;KT(0.001)ET(0.999)QEKNPLPSK;KT(0.203)ET(0.797)QEKNPLPSK;KT(0.213)ET(0.787)QEKNPLPSK 174.02 0.00098595 6248360000.0 9062500.0 6040600.0 3744260.0 5301640.0 5803010.0 8260500.0 4329260.0 4011850.0 12689500.0 4466950.0 True False 9013708.506938405 6241657.719380183 4271419.262308664 5972827.080410602 6541988.926364982 7689471.078125401 4119837.1544207577 4311234.618761515 9562342.755588455 4181865.4266517027 2.1554276829408683 1.492553461811825 1.021414805719529 1.4282686005017788 1.5643709825456915 1.8387657883773978 0.9851673198674379 1.0309357616544335 2.2866213471734653 1.0 21.99571520575524 4.716240167739565 4.161333061608647 1.3726002554577938 2.2042434781454645 0.2384683514873578 0.4030056999286774 0.27809187533428886 10.50785383812955 0.0956126300102149 0.6602937281392471 52028.36373074828 -4.716240167739565 0.8316432226876707 KTET(ph)QEKNPLPSKETIEQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 KT(0.055)ET(0.944)QEKNPLPS(0.001)KETIEQEK 72.035 0.0088242 546450000.0 235890.0 227270.0 143800.0 245690.0 234380.0 308200.0 186220.0 177490.0 584540.0 208220.0 True False 234619.9944498429 234834.5445623836 164045.79006799342 276794.32880883664 264226.9037209006 286894.8594247624 177211.82717051756 190735.20507595787 440487.9494347037 194931.22133388932 1.2036039832119678 1.2047046284091434 0.8415572884910336 1.4199589317440715 1.3554878582960175 1.4717748006788125 0.909099250278533 0.9784743755811991 2.2597095858759886 1.0 17.57260565408451 3.7110706557423785 24.82135018205601 1.3007927530372532 1.0954300515688637 0.08382770238012682 0.3744104296440207 2062.958491315546 1862694.630476066 0.0998686379969896 0.15475460529905533 5141.272885890387 -3.7110706557423785 -0.20536270146838942 KTETQEKNPLPSK ddPTM_BT-474_Trastuzumab_2h_R1 3 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 ;; 139.58 0.00015471 18554080000.0 8286890.0 7401260.0 7076770.0 6946850.0 6292990.0 9717900.0 10283700.0 8868430.0 13924000.0 9869300.0 False True 8242274.305000041 7647606.464943853 8073117.703612482 7826320.497723425 7094364.975025988 9046124.446475983 9786238.143451013 9530237.279575065 10492616.77204096 9239432.824467177 0.8920757866406545 0.8277138445870869 0.8737676713481648 0.8470563774216039 0.7678355489786365 0.9790778956172191 1.0591816975535366 1.0314742756003163 1.1356342939422857 1.0 23.139372861826647 2.5259021995399573 4.1890333231588865 1.053925472692556 0.8435230791202367 0.8400233726045121 0.044453173525779245 0.08047806045987745 2.97677338082445 0.014768542705452184 0.01337753941640347 335.66201669884896 -2.5259021995399573 -0.21040239357231927 KTETQEKNPLPSKETIEQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 174.63 1.3665e-12 1540300000.0 1058100.0 1067600.0 1159600.0 1172000.0 1029700.0 1611800.0 1719000.0 1211800.0 3048500.0 1718300.0 False True 1052403.307165961 1103134.4206221711 1322861.6005761134 1320375.0798321315 1160826.1914899372 1500380.0597690858 1635845.4027822958 1302230.6693957173 2297238.0228071567 1608636.622889357 0.6542206562944489 0.6857573705121629 0.8223495485264112 0.8208038167504457 0.7216211386539965 0.9327029102906872 1.016914186526518 0.8095244450276858 1.4280652262416893 1.0 20.61740703984672 2.2593491849627703 0.6606089520748671 1.1199838855272624 0.7108516252422332 0.5218886826954641 0.14846798476655784 0.6394272565568198 0.5479479521848607 0.12517710676546567 0.08637620781303063 181.6975975351287 -2.2593491849627703 -0.40913226028502914 KTFEINPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTFEINPR 8 1 P14625;H0YIV0;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 ; 166.33 0.00051168 1550480000.0 2675600.0 3559500.0 2876300.0 3002500.0 2997200.0 3455400.0 2928700.0 3057000.0 4554700.0 3309100.0 False True 2661194.866887109 3677975.8057368104 3281258.0387522215 3382616.1921467395 3378875.654203792 3216536.331136676 2787027.59227953 3285128.863131464 3432255.214853128 3097910.4049369595 0.8590289966572686 1.1872440855214645 1.0591842919417784 1.0919025246037009 1.0906950855709303 1.0382922391850549 0.8996475778763667 1.0604337872057712 1.1079259133457644 1.0 21.562863989687205 2.480630158421209 24.981666498330675 1.01517938201357 1.0665741647888123 0.03763204189356084 0.09118227519882592 429.45696574417957 3057555.6688494245 0.030114108476911285 0.02565821504769995 302.4336830990951 -2.480630158421209 0.05139478277524234 KTGQIWPNDGEGAFHGDADGSFGT(ph)PPGYGCAADR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 34 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 KTGQIWPNDGEGAFHGDADGS(0.001)FGT(0.999)PPGYGCAADR;KTGQIWPNDGEGAFHGDADGS(0.012)FGT(0.988)PPGYGCAADR 190.01 2.2704e-20 1235270000.0 597700.0 645780.0 615110.0 626840.0 634350.0 756410.0 730020.0 644490.0 889420.0 751660.0 True False 594482.0496107135 667274.3969177469 701712.1413680343 706197.8797286464 715130.712412976 704121.1570976144 694706.1436527817 692585.1164539078 670234.3586173999 703688.4152714969 0.8448086350566829 0.9482526391461188 0.9971915497533094 1.0035661585478586 1.0162604597335376 1.000614962271264 0.9872354419601329 0.9842212851929569 0.9524589918946019 1.0 19.424577236752025 4.695429930824756 2.273267367247169 0.9929104356170997 0.8156798950711813 0.8852709477247693 0.016129607560462313 0.17217810609654233 1.122930842172378 0.004352483844814276 0.058736664741844594 49594.090571683126 -4.695429930824756 -0.17723054054591836 KTGQPMINLYTDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTGQPMINLYTDR 13 1 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 ; 156.17 6.7225e-05 4428000000.0 1665520.0 2031100.0 2117500.0 1990370.0 1743090.0 1882510.0 2117600.0 1682970.0 2583500.0 2067140.0 False True 1656553.0253766668 2098703.935674124 2415625.5943600577 2242350.6379227675 1965062.1793961308 1752376.5146518794 2015163.5979824269 1808561.7673484986 1946831.0421263878 1935213.3554324056 0.856005370532659 1.084481940858241 1.2482476867881622 1.1587097782413427 1.0154240481443224 0.9055210939572743 1.041313399540981 0.9345541990352749 1.0060033105194164 1.0 20.8840612002189 3.043965834979078 7.192443234407459 0.9740664891964983 1.0974848648483928 0.21167747986266083 0.09871578754374406 0.3023208234461056 39.433792274683555 0.029642072621948828 0.035355281754052524 1106.5367316681934 -3.043965834979078 0.12341837565189451 KTGSPGS(ph)PGAGGVQSTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTGSPGSPGAGGVQSTAK 18 1 O43237;O43237-2;J3KRI4;J3KRZ2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 KTGSPGS(0.999)PGAGGVQSTAK;KT(0.003)GS(0.003)PGS(0.994)PGAGGVQSTAK 186.55 2.9052999999999996e-14 208106000.0 184479.0 145602.0 142281.0 146071.0 138895.0 202169.0 176394.0 149833.0 268260.0 220552.0 True False 183485.78556154354 150448.27455173232 162312.92807137794 164563.57362300306 156582.45495483617 188193.53288463614 167861.14832948265 161014.2992965577 202150.91749983537 206476.18253593286 0.8886535159066672 0.7286471141801062 0.7861096910929704 0.7970099582520332 0.7583560148763708 0.9114539535420023 0.8129806850737853 0.7798202064712065 0.9790519904863857 1.0 17.655615847756852 1.2312091933023472 23.1163036664793 0.9895264994878767 0.8049959774774001 0.6558003478518715 0.052605868533575094 40.402775426869226 127030.70348390573 0.04504124170771861 0.012260178923652363 17.029786107619053 -1.2312091933023472 -0.1845305220104766 KTKPPRPDS(ph)PATTPNISVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTKPPRPDSPATTPNISVK 19 3 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 KTKPPRPDS(1)PATTPNISVK;KTKPPRPDS(1)PATTPNISVK 241.71 1.2402999999999996e-23 3816600000.0 2752800.0 2518500.0 2448600.0 2325900.0 2521500.0 2895800.0 3256600.0 2962200.0 4582100.0 3083400.0 True False 2737979.230664835 2602326.750034603 2793341.596387263 2620358.7015201007 2842598.07889859 2695620.1619799742 3099065.81657989 3183254.4057468185 3452902.851994319 2886614.772168447 0.9485087019796702 0.9015150809609817 0.967687695399994 0.9077618277244759 0.9847514487578157 0.9338343959055555 1.0735986826021293 1.1027638451928012 1.1961772264473212 1.0 21.460947157547558 2.1622196557037845 3.4886939724938553 1.1071862268152626 0.9397392224900948 0.6897598857891281 0.0501132287438629 0.12128274149203021 2.9403808454175073 0.019190258083899868 0.013638826696804312 145.28462464825165 -2.1622196557037845 -0.1674470043251678 KTKPYIQVDIGGGQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTKPYIQVDIGGGQTK 16 2 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 188.06 6.9741e-10 1666750000.0 2733140.0 2940010.0 2578060.0 2207920.0 2608910.0 3283890.0 3112200.0 3127050.0 5356580.0 3389040.0 False True 2718425.0779204024 3037866.455576425 2941028.439100772 2487442.4456168623 2941139.224278929 3056882.413745569 2961650.996241454 3360406.3498381563 4036522.6334946253 3172748.565696882 0.8568044462493708 0.9574872993155602 0.9269654932315087 0.7840023859787026 0.9270004109616292 0.9634808275688674 0.933465395985748 1.0591467556459382 1.272247879058774 1.0 21.597301764265453 1.6406101129244384 2.9630504116339824 1.143696989788878 0.9059481365606801 0.5894391384686248 0.07920627098199373 0.13730790876808943 2.8253421360761366 0.04871785832377571 0.020467724879159377 43.7129496747935 -1.6406101129244384 -0.23774885322819794 KTLDSVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTLDSVAK 8 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 124.81 0.0020669 1806490000.0 3677200.0 3781800.0 3778100.0 3289400.0 3246600.0 4409500.0 4499800.0 4042700.0 6173000.0 4568100.0 False True 3657402.3637753264 3907674.9268536204 4310023.640166104 3705837.70273022 3660035.2658941774 4104681.6438464927 4282127.483094697 4344386.8024146445 4651746.863962141 4276559.947052829 0.8552206467480499 0.9137425817090618 1.0078249091624065 0.8665464178244667 0.8558363056307613 0.9598092145709812 1.0013018725589722 1.015860143714005 1.0877310084634426 1.0 22.028019332566764 2.28501085714053 2.1633237216169148 1.032206132419213 0.9049729891357334 0.6152468147443109 0.04707641076875652 0.22517368706202015 2.154485786200316 0.021987277275605434 0.015434825847485968 192.7573100932938 -2.28501085714053 -0.12723314328347968 KTLEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KTLEEEAK 8 1 P35579 P35579 MYH9 Myosin-9 0 ;; 121.83 0.0022712 1625850000.0 987330.0 813570.0 731570.0 710330.0 710640.0 1086110.0 970040.0 869440.0 1607720.0 1068520.0 False True 982014.324982676 840649.18563655 834568.6970795678 800257.7051682239 801135.7917067201 1011029.772127933 923115.4592873415 934322.0277268633 1211518.9483442737 1000326.1387940043 0.9816941564344154 0.8403751067127354 0.8342966005924087 0.7999967951782372 0.8008745954320172 1.0107001436019987 0.9228144936812825 0.9340174084157036 1.211123953838579 1.0 19.932039011434384 1.7452285430755918 1.1299972448890137 1.082016533815432 0.8599201626425641 0.46994957745841714 0.08731096916962133 0.4162003144693101 0.9920036563887858 0.0737355668722076 0.029177464984993635 55.61968732458105 -1.7452285430755918 -0.22209637117286785 KTLFEDSFQQIMSFSPQDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KTLFEDSFQQIMSFSPQDLR 20 1 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UJW8;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 95.419 0.0019703 39175000.0 35040.0 42271.0 45757.0 45497.0 41769.0 59334.0 54040.0 32007.0 66687.0 54247.0 False True 34851.348533309974 43677.96468164087 52199.18787302624 51256.91553508747 47088.034565740694 55232.38023721237 51425.878747152616 34395.52486825277 50252.88241001835 50784.910016806694 0.6862540176161839 0.8600579319169048 1.0278483875574753 1.0092942080260567 0.9272052377400578 1.087574640162478 1.012621243793359 0.6772784446574771 0.9895239037223404 1.0 15.632112264776174 4.630155717714707 3.214099662234378 0.947657641220174 0.6755435320644713 0.3864423289860792 0.10627817184088897 0.3413944248228452 5.669043582068907 0.029262558207718555 0.19548012326919148 42673.2497714815 -4.630155717714707 -0.2721141091557028 KTPCGEGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 KTPCGEGSK 9 1 P60866;P60866-2;G3XAN0 P60866 RPS20 40S ribosomal protein S20 0 ;;;; 114.86 0.0025163 3911020000.0 3340300.0 2896660.0 2787120.0 2388510.0 2354040.0 2150750.0 3296930.0 3001510.0 4755400.0 3435550.0 False True 3322316.195942215 2993073.5770320506 3179522.269918677 2690895.1211005505 2653813.040511775 2002073.714820921 3137444.9004043275 3225497.917558954 3583495.389095344 3216290.2576776645 1.032965289128198 0.9305980919748243 0.9885681997539811 0.8366456089207329 0.8251161518077573 0.6224791776929134 0.9754856213349763 1.0028628199396215 1.1141703957039069 1.0 21.616966179328625 2.0124659972998935 24.999921349812947 1.026790489058426 0.8703337712735579 0.325821968301775 0.10844220383173582 290.4419655722514 582464.2422818919 0.043640444925285814 0.03221130197008351 102.91199500091426 -2.0124659972998935 -0.15645671778486814 KTPEKLDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTPEKLDNTPASPPRSPAEPNDIPIAK 27 3 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;E9PGB3;O95359-2;Q4VXL4;H0Y911;H0Y8P9 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 2 KTPEKLDNT(0.049)PAS(0.951)PPRS(1)PAEPNDIPIAK 188.26 1.2487e-17 280970000.0 407660.0 334440.0 329620.0 310970.0 315830.0 454130.0 443910.0 418760.0 694940.0 457870.0 True False 405465.203855284 345571.63322675065 376027.6308915993 350338.7701155272 356049.07842892787 422737.06200703245 422436.3773991215 450009.99762019346 523681.3487189134 428648.34459777083 0.9459157114808385 0.8061891235134092 0.8772403664464188 0.8173104469685362 0.8306321088514463 0.9862094822825331 0.9855080107576797 1.049834913144171 1.22170388692465 1.0 18.70943504628555 2.211070479652321 1.2890342064681681 1.0996050767748957 0.8522421139840746 0.6857409694203671 0.06789070969835367 0.24224287371827274 0.7761440741238711 0.041688324484127175 0.02335929819317867 162.58125799821488 -2.211070479652321 -0.24736296279082115 KTPES(ph)FLGPNAALVDLDSLVSRPGPTPPGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTPESFLGPNAALVDLDSLVSRPGPTPPGAK 31 2 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 KT(0.209)PES(0.791)FLGPNAALVDLDSLVSRPGPTPPGAK 256.96 9.706199999999998e-59 873450000.0 311370.0 265760.0 255210.0 215480.0 234710.0 377350.0 371720.0 290360.0 504980.0 352490.0 True False 309693.61851645913 274605.6609446875 291141.34967491415 242759.7459063381 264598.9272648373 351264.68268635334 353738.4834917019 312028.1376182046 380534.4453853231 329993.78641812835 0.9384831813895208 0.8321540351573175 0.8822631263305514 0.7356494452254388 0.8018300287920254 1.0644584751098103 1.0719549823386283 0.9455576149026035 1.1531563958090887 1.0 18.332079334095333 2.737560242935801 24.995632075324792 1.0376227226582935 0.8345114435969537 0.6888412116897336 0.07005428187054422 54.17132963256631 1353526.7183709268 0.022286724908846676 0.02214648198756659 546.4623468681906 -2.737560242935801 -0.20311127906133974 KTQDQISNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTQDQISNIK 10 1 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ; 170.4 6.9544000000000016e-06 5010000000.0 3595430.0 3445750.0 3339770.0 3152600.0 3166850.0 4087660.0 3989900.0 3922910.0 4998920.0 4033100.0 False True 3576072.604369824 3560439.70575014 3809980.5861987695 3551718.8367566406 3570129.5761094578 3805089.6855166242 3796893.2941018525 4215657.4643333545 3767003.1480961675 3775704.105089374 0.947127344949923 0.9429869520100705 1.0090781693044202 0.9406772188448725 0.9455533264106113 1.0077828080827733 1.0056119834665849 1.1165222027464905 0.9976955405532234 1.0 21.84831427712592 2.3477254400891017 2.1731029032203057 1.050002245329587 0.9590855050609737 0.42838328225429 0.03820170243523805 0.24122236551848522 2.3356143177417446 0.01625675273270423 0.012086561946095371 222.7026783240534 -2.3477254400891017 -0.0909167402686133 KTQS(ph)FEIPQPDSGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 KTQSFEIPQPDSGPR 15 1 A0A1B0GW72;Q96PX9 A0A1B0GW72 PLEKHG4B Pleckstrin homology domain-containing family G member 4B 1 KT(0.068)QS(0.932)FEIPQPDSGPR;KT(0.003)QS(0.997)FEIPQPDSGPR;KT(0.015)QS(0.985)FEIPQPDSGPR 189.11 1.6620999999999998e-07 3298760000.0 1961780.0 1886700.0 1529280.0 1703440.0 1641650.0 1881690.0 1807260.0 1732580.0 2128180.0 1978570.0 True False 1951217.9944542465 1949497.6689657655 1744589.3312599517 1919095.3293423615 1850704.396678118 1751613.1993218067 1719835.9293963562 1861873.917462974 1603718.555150972 1852295.968661 1.053405086156267 1.0524763331288958 0.9418523609491479 1.036063006026866 0.9991407571954969 0.9456443402983943 0.9284887288501754 1.0051708522633658 0.8658003808701688 1.0 20.820883207017474 5.165121895199669 0.43093467980807 0.9508833378976892 1.1819386531523113 0.34991957931509143 0.046621985490257936 8.395608825798217 0.9262520590264282 0.03199196019241102 1.0719438783233592 146258.7627273882 -5.165121895199669 0.23105531525462208 KTQYEEHIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 KTQYEEHIYR 10 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 0 103.08 0.0018575 198080000.0 153020.0 167400.0 177190.0 167590.0 143110.0 171200.0 196160.0 152150.0 262650.0 192000.0 False True 152196.15732212042 172971.8078045633 202136.81183691078 188806.87681661034 161334.21022057385 159365.3469614513 186670.99139603006 163504.20560204526 197923.42682968648 179746.39562052995 0.8467271724515023 0.9623102995051496 1.1245667048793022 1.0504070257698428 0.8975657601567332 0.8866121983213174 1.038524253861084 0.9096382992136641 1.101125984453846 1.0 17.455603315629766 1.235022143464784 24.98714203183968 1.0505629705272224 0.9685237810719953 0.1413400187135676 0.08435202870024877 202.08361931092665 1426915.7992288952 0.07248398020547414 0.020887626329540537 17.179959807496385 -1.235022143464784 -0.08203918945522704 KTS(ph)DANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 4 KTSDANETEDHLESLICK 18 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 KT(0.091)S(0.909)DANETEDHLESLICK;KT(0.16)S(0.828)DANET(0.012)EDHLESLICK;KT(0.159)S(0.841)DANETEDHLESLICK;KT(0.164)S(0.836)DANETEDHLESLICK 273.56 3.1701999999999994e-39 3966910000.0 2768970.0 2363830.0 2035360.0 1930610.0 1925700.0 2404740.0 2075950.0 1874110.0 2943800.0 1939870.0 True False 2754062.173181491 2442508.652584592 2321920.996333738 2175025.0280500986 2170926.480481861 2238505.9839490717 1975528.3676008768 2013965.6047377544 2218339.9348990363 1816065.8357937369 1.516499082192023 1.344944992876351 1.2785445056945912 1.1976575877269744 1.1954007600903012 1.232612794001877 1.0878065809422843 1.1089716931201026 1.2215085440057738 1.0 20.792385073302945 7.999999999999999 0.32374540134457136 1.0918040065632897 5.208306223152244 0.8322164243464979 0.055922833077729564 21.179246561345877 0.3030464397373717 0.04959673163429613 51.812892208974276 99999999.99999979 -7.999999999999999 4.1165022165889535 KTS(ph)PQVK ddPTM_BT-474_Trastuzumab_2h_R1 3 KTSPQVK 7 1 E9PSC8;E9PKA8;Q6ZUT1-3;Q6ZUT1;Q6ZUT1-2 E9PSC8 C11orf57 Uncharacterized protein C11orf57 1 KT(0.072)S(0.928)PQVK;KT(0.105)S(0.895)PQVK;KT(0.363)S(0.637)PQVK 79.97399999999998 0.019092 1638390000.0 760010.0 608650.0 500510.0 490720.0 470380.0 404090.0 636620.0 668460.0 953270.0 751570.0 True False 755918.1906050495 628908.5473133061 570977.4574890923 552845.1016853453 530280.1048393095 376156.2094255427 605824.2584754304 718343.879571101 718349.3816635646 703604.1591485499 1.0743515096894911 0.8938385868474187 0.8115038122856568 0.7857331348841909 0.7536625500921079 0.534613396658626 0.8610299564012732 1.0209488818832284 1.0209567017523864 1.0 19.42440448533829 1.81281689340315 4.4038559491446 1.0148361397380894 0.8020080636784986 0.34328225465934903 0.12583168682126566 0.25534696837997045 8.422512415688777 0.06637157486869955 0.036384735493313995 64.98556414011364 -1.81281689340315 -0.21282807605959075 KTS(ph)TSPPPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTSTSPPPEK 10 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KT(0.229)S(0.4)T(0.229)S(0.142)PPPEK 60.628 0.059325 1462000000.0 1270800.0 968860.0 910870.0 716830.0 791170.0 978650.0 1035800.0 1000600.0 1401900.0 1002600.0 True False 1263958.1539991521 1001107.9194117625 1039112.5785760304 807580.6045017644 891920.809868015 910998.2289943021 985694.3968597468 1075269.8529438474 1056420.5294975736 938613.209630955 1.346623018970846 1.066581962771842 1.1070721868325184 0.8603976549821729 0.9502538433469324 0.9705789558965289 1.0501603714348993 1.145594204205397 1.1255121051545165 1.0 19.840171238803592 4.910871099604968 1.9068388698678025 1.0278956759328595 1.563792709553476 0.5728218980484898 0.08255848001953237 1.1894297089970258 3.070062376454747 0.023991450254142135 1.3084905218871896 81446.25123073725 -4.910871099604968 0.5358970336206166 KTSAVS(ph)SPLLDQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTSAVSSPLLDQQR 14 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 KTSAVS(0.785)S(0.215)PLLDQQR;KTSAVS(0.716)S(0.284)PLLDQQR 195.38 4.0477e-08 486960000.0 413270.0 467444.0 510854.0 529794.0 497613.0 523981.0 585830.0 493690.0 832670.0 618954.0 True False 411045.0002386135 483002.5909641347 582777.8027774316 596865.8660789971 560981.0659666716 487759.42678860034 557491.1648120726 530531.6547070245 627469.6357063585 579451.8258068203 0.7093687204562354 0.8335509000970166 1.005739867962242 1.0300526109274568 0.9681237351967433 0.8417600999176268 0.962100971958851 0.9155750850699623 1.0828676479406703 1.0 19.14432919855281 4.476275133534629 3.255059630977978 0.9660277788909596 0.7194657293484384 0.6490516927808796 0.06275982811722183 0.15772636839778892 3.2738372671958045 0.01601890208699273 0.07075916840531372 29941.60891832441 -4.476275133534629 -0.24656204954252114 KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR ddPTM_BT-474_Trastuzumab_2h_R1 10 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 KT(0.131)S(0.09)FDQDS(0.78)DVDIFPSDFPTEPPSLPR;KT(0.066)S(0.044)FDQDS(0.889)DVDIFPSDFPTEPPSLPR;KT(0.047)S(0.047)FDQDS(0.907)DVDIFPSDFPTEPPSLPR;KT(0.017)S(0.017)FDQDS(0.966)DVDIFPSDFPTEPPSLPR;KT(0.017)S(0.017)FDQDS(0.967)DVDIFPSDFPTEPPSLPR;KT(0.016)S(0.026)FDQDS(0.958)DVDIFPSDFPTEPPSLPR;KT(0.022)S(0.013)FDQDS(0.966)DVDIFPSDFPTEPPSLPR;KT(0.033)S(0.033)FDQDS(0.935)DVDIFPSDFPTEPPSLPR;KT(0.034)S(0.134)FDQDS(0.831)DVDIFPSDFPTEPPSLPR;KT(0.002)S(0.01)FDQDS(0.988)DVDIFPSDFPTEPPSLPR 238.98 3.0963e-45 37009509000.0 1867416.0 2575534.0 2237676.0 2169890.0 2182793.0 2861783.0 2731582.0 2793246.0 3781376.0 2635043.0 True False 1857362.0397454242 2661259.09224682 2552721.33057154 2444597.8515161686 2460758.7501222645 2663954.6771225687 2599444.943003416 3001692.20033579 2849506.5526424297 2466872.29976619 0.7529218435512308 1.0787988873599392 1.03480075997995 0.9909705710132898 0.9975217405276695 1.07989160094548 1.0537411860556347 1.216800805060031 1.1551090637778476 1.0 21.23425160427212 5.203797431363688 1.762592370267639 1.0789735338243436 1.516694172584129e-08 0.6318659961544092 0.07072828208150587 3.1197543180999685 3.1351139931833 0.020898476549635187 8.497981820992397 159881.21182999705 -5.203797431363688 -1.0789735186574019 KTSFDQDSDVDIFPSDFPTEPPSLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 0 ; 114.21 0.0023088 201543000.0 119822.0 196598.0 180164.0 178100.0 177519.0 201041.0 241420.0 207964.0 250230.0 208045.0 False True 119176.89166547556 203141.64558399914 205529.5251864393 200647.44173899555 200124.9924124522 187143.50886960948 229741.59228603973 223483.32969979456 188564.16941021328 194767.3899837144 0.6118934575004604 1.0429961894595647 1.055256350683884 1.0301901245160845 1.0275076974086153 0.960856480570272 1.1795690865152 1.1474371028870964 0.9681506202140933 1.0 17.571392620814695 4.738957715953517 5.5053413244017735 1.0582817692372783 0.5955630651882056 0.7874414087127881 0.06739229913906307 0.06693059779500213 7.899183628117878 0.017356375826825476 0.11680675855840043 54822.35858403538 -4.738957715953517 -0.4627187040490728 KTSS(ph)DDES(ph)EEDEDDLLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 KTSSDDESEEDEDDLLQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 KT(0.035)S(0.167)S(0.798)DDES(1)EEDEDDLLQR 205.24 3.4448999999999996e-15 388980000.0 928460.0 786970.0 892800.0 669270.0 670400.0 1043200.0 1012500.0 926370.0 1423600.0 993330.0 True False 923461.2745216028 813163.8207165884 1018498.4796432862 753999.5133782012 755771.4662278865 971086.0394286577 963521.5068743898 995500.4334115464 1072772.8552626767 929934.828967402 0.993038700945326 0.874430976651906 1.0952364057320287 0.8108089834805315 0.8127144426530338 1.0442517143991155 1.0361172383921595 1.0705055907164467 1.1536000393209078 1.0 19.82677008827033 2.5758573126818827 7.553471456941644 1.066082185029516 0.9189780459608807 0.4106042863578371 0.08630880901588182 0.28383161902546344 19.201394093267748 0.028217817864058452 0.026543087300657464 376.58005339630745 -2.5758573126818827 -0.14710413906863518 KTST(ph)SPPPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTSTSPPPEK 10 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KT(0.006)S(0.313)T(0.34)S(0.34)PPPEK 104.24 0.0052372 97674000.0 318730.0 262230.0 212430.0 198830.0 217890.0 273620.0 278710.0 289500.0 389620.0 288270.0 True False 317013.993094232 270958.16702861735 242338.2975253395 224001.85761350067 245636.9999647886 254705.29343219832 265227.73252440634 311103.96005121304 293603.3716405195 269872.3617996361 1.1746812121857655 1.004023402847704 0.8979737528856735 0.8300288926207586 0.9101969476487527 0.9437991046348851 0.9827895333769743 1.152781848339805 1.0879341985323498 1.0 18.04191770935088 1.8989876210923735 5.761950397181499 1.0930758607318292 0.9520395448717701 0.25069895167052914 0.09177156733205748 0.2896143264518423 13.436203397710248 0.04311962272314801 0.026013253981797487 79.24787417501054 -1.8989876210923735 -0.14103631586005905 KTSTS(ph)PPPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTSTSPPPEK 10 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KT(0.019)S(0.137)T(0.1)S(0.744)PPPEK 66.533 0.040234 1349900000.0 1261100.0 976350.0 913750.0 800310.0 932980.0 1088700.0 1105400.0 1120300.0 1549500.0 1155200.0 True False 1254310.3777213816 1008847.2195339627 1042398.057542621 901629.1639423672 1051789.4727942927 1013440.7315241375 1051927.5789619267 1203902.4747681331 1167646.4872362427 1081474.1469835206 1.1598154067944582 0.9328445089028424 0.9638677544443465 0.8337038536309145 0.9725516562073858 0.9370919631790147 0.972679357981875 1.1132050434363996 1.0796804440430467 1.0 20.044567746908417 1.8176703619682744 6.776630524325688 1.0736381969628648 0.9593414369219452 0.227832342160171 0.08030316885237004 0.3009155080069922 20.91216085908764 0.035131133705295484 0.02106652809254185 65.71588515489428 -1.8176703619682744 -0.1142967600409196 KTSYLTELIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 KTSYLTELIDR 11 1 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;Q5JV98;Q9P289-2;Q5JV99;Q8NBY1;B4E0Y9;Q9P289-3;Q9P289 B4DR80;Q8NBY1 STK24;STK26 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26 0 106.55 0.0037143 931570000.0 356290.0 499460.0 469230.0 499540.0 445320.0 488640.0 447260.0 413060.0 519250.0 538360.0 False True 354371.7742275407 516084.2241700547 535293.505379726 562781.71278101 502028.8623815665 454861.4669348347 425624.32510087895 443884.6346761802 391287.79509352706 504001.4038868155 0.7031166411336478 1.0239737829896058 1.062087330018505 1.1166272721482238 0.9960862380738686 0.9025003966794184 0.8444903562142898 0.8807210282609931 0.7763625102548312 1.0 18.943068226768602 2.628569509890165 3.712418876439395 0.8671238430427868 0.9948982493065722 0.15320715382167482 0.11491575909108454 0.3902459676295824 9.745085059617526 0.038963985542268244 0.03654383555853598 425.1767519343403 -2.628569509890165 0.12777440626378544 KTTHFVEGGDAGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTTHFVEGGDAGNR 14 1 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ; 122.93 6.8715e-05 192966000.0 307080.0 269460.0 261740.0 265620.0 247220.0 311700.0 300200.0 265770.0 323110.0 307030.0 False True 305426.7153997953 278428.8132079903 298590.716915136 299247.4647653679 278702.00161225855 290152.9126628764 285678.1791246338 285603.10695271514 243483.86995218007 287435.08253839257 1.0625937262164218 0.9686667707683202 1.0388109700396555 1.0410958263085286 0.9696172059130341 1.0094554572130938 0.9938876514368279 0.9936264718645376 0.8470916904155499 1.0 18.13287663336239 1.4097151807395951 8.937085013615727 0.9217588017062114 1.0087302213929359 0.3777090198070332 0.04462540855583806 0.2758711922256137 32.617713656186844 0.02664900751737381 0.009988046741719289 25.687106169511523 -1.4097151807395951 0.0869714196867245 KTTHFVEGGDAGNREDQINR ddPTM_BT-474_Trastuzumab_2h_R1 3 KTTHFVEGGDAGNREDQINR 20 2 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ;; 135.91 3.8008e-06 1358860000.0 576910.0 625660.0 661700.0 658310.0 623630.0 673310.0 675860.0 624310.0 785330.0 749280.0 False True 573803.9806607268 646484.7148805439 754861.6084004961 741651.9785019556 703045.5839553946 626765.6645012549 643166.0697640737 670899.1823819437 591795.9443828594 701460.3089091185 0.8180134690059406 0.9216269355081966 1.0761287542760973 1.0572971400981213 1.002259964001016 0.89351550834854 0.9168958836235488 0.9564321371586908 0.8436627658993214 1.0 19.42000194783295 2.743618866140628 24.746092998892287 0.922107947189579 0.9822795349947041 0.10155549220842675 0.07729183420145866 854.9129210145807 4182429.345359399 0.025250352739080377 0.02605401236096147 554.1391907507755 -2.743618866140628 0.060171587805125104 KTTPS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTTPSPGR 8 1 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 1 KT(0.007)T(0.053)PS(0.941)PGR;KT(0.086)T(0.047)PS(0.867)PGR 63.473 0.044769 320090000.0 535390.0 396920.0 357020.0 353190.0 287970.0 355130.0 428020.0 404400.0 640300.0 444160.0 True False 532507.5197274213 410131.24225679284 407285.31272652955 397903.8177866132 324641.2725680856 330580.69898609933 407315.03740481567 434578.3815015908 482506.6445804242 415813.3285354929 1.2806408144802115 0.9863350068678354 0.979490758896548 0.9569289642254674 0.7807380146073767 0.7950218915550749 0.9795622445278307 1.0451285509105468 1.160392444080201 1.0 18.665576477712147 -0.16332925403267007 7.3584459124773325 0.9999597231524524 0.9853720958497639 0.0 0.14155322848239163 0.0 0.0 0.14170491480338734 0.0334001687283124 0.6865477464918284 0.16332925403267007 -0.014587627302688477 KTTTTPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 KTTTTPGR 8 1 P17096;P17096-2 P17096;P17096-2 HMGA1 High mobility group protein HMG-I/HMG-Y 0 ;;; 110.14 0.0055864 1074080000.0 932926.0 1030252.0 938259.0 935443.0 925720.0 848079.0 1009120.0 946876.0 1204783.0 1014540.0 False True 927903.2300738229 1064543.3150195146 1070357.7117065757 1053869.9878868684 1043604.9548276837 789453.2948932289 960305.0103872425 1017536.6952589027 907880.3729150981 949791.1886086073 0.9769549783180774 1.1208182680437508 1.126940031181582 1.1095807168212741 1.0987730433217733 0.8311861642449382 1.0110696139369721 1.0713267373532271 0.9558736528658407 1.0 19.857250846542062 KTVEDEDQDS(ph)EEEKDNDSYIK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTVEDEDQDSEEEKDNDSYIK 21 2 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 KTVEDEDQDS(1)EEEKDNDSYIK;KTVEDEDQDS(1)EEEKDNDSYIK 236.77 4.0244e-30 594270000.0 1290640.0 678200.0 598030.0 515530.0 503670.0 985670.0 1006290.0 911360.0 1811530.0 903590.0 True False 1283691.3376435842 700773.4770194433 682227.4258300562 580796.0451415179 567809.3890140209 917532.9529176052 957611.9082988928 979370.3109923088 1365102.7047583573 845922.1125976809 1.5175053572031467 0.8284137115975002 0.8064896468246391 0.6865833585529446 0.6712312877959605 1.084654177084956 1.132033190807877 1.1577547109920456 1.6137451479621006 1.0 19.69016530924541 2.193903934136115 1.8164572595976138 1.2662740130120849 0.8854604283171034 0.2415464124123644 0.26734357227084116 0.48069063048605243 3.1381597988513024 0.14179702091826177 0.0859603262866998 156.280191289328 -2.193903934136115 -0.3808135846949815 KTVGVEPAADGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KTVGVEPAADGK 12 1 P46779;H0YKD8;P46779-2;P46779-3;H0YLP6;H0YMF4;P46779-4;P46779-5 P46779 RPL28 60S ribosomal protein L28 0 86.46700000000001 0.01779 257110000.0 356790.0 353630.0 302600.0 305190.0 309860.0 412030.0 403110.0 356550.0 569860.0 415760.0 False True 354869.08228309517 365400.3607761507 345203.4497536499 343827.02270816395 349318.8343158904 383547.33591429226 383610.0292702573 383157.57152421464 429425.63873278216 389225.84084995586 0.91173053029615 0.9387875172373519 0.8868975631212617 0.8833612433268713 0.8974708193913328 0.9854107709722885 0.9855718428986233 0.9844093873302711 1.1032814208713422 1.0 18.570247968801787 2.2767441048932753 1.134235417823662 1.032444726504028 0.9028234595911545 0.7176765337550985 0.03438521547244372 0.27718174125831496 0.690902235017538 0.023151559204627494 0.013556338513817968 189.12289398774612 -2.2767441048932753 -0.12962126691287346 KTVT(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTVTPAK 7 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 KTVT(1)PAK;KT(0.033)VT(0.967)PAK 96.143 0.0075876999999999984 388430000.0 1956650.0 1152570.0 1135080.0 1108640.0 994960.0 958500.0 1369260.0 1587360.0 2764000.0 1855390.0 True False 1946115.6138042533 1190932.595706721 1294889.3977077745 1248993.7103285787 1121662.2584100494 892241.1510663033 1303023.66271884 1705816.863650758 2082849.2357024683 1736977.421720704 1.1204035178974119 0.6856350467278648 0.7454843002075506 0.7190615690855018 0.6457552322694533 0.5136745820117923 0.7501673000608287 0.9820604702857465 1.1991228035878168 1.0 20.728147570474796 1.632606981480784 3.336298149338239 1.0972760688789736 0.7240533966978346 0.4900713654276613 0.15197002265927434 0.15784374413413924 4.155597397798276 0.09392122070142614 0.04045736213500375 42.91478899199025 -1.632606981480784 -0.3732226721811389 KTYDLLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KTYDLLFK 8 1 P61026 P61026 RAB10 Ras-related protein Rab-10 0 ; 91.584 0.019856 789580000.0 789920.0 925750.0 878810.0 713350.0 872450.0 1189890.0 779570.0 748910.0 1244510.0 1025340.0 False True 785667.1584883621 956563.0291223086 1002538.8092465455 803660.0368585775 983551.3360837109 1107635.704999776 741859.2208534011 804797.4670879237 937817.1860796241 959901.923362261 0.8184869093046458 0.9965216298054105 1.0444179606755446 0.8372314059373763 1.024637321944947 1.1539050793023167 0.772848978419463 0.8384163501505957 0.9769927148335317 1.0 19.87252748245065 1.011210105688724 24.420505229831914 1.0000001493657384 0.9337769822293928 0.03457422522817133 0.11423424142647905 526.126496672151 1146126.7615084525 0.11354947465049535 0.02838736872651994 10.26148242572648 -1.011210105688724 -0.06622316713634568 KTYVTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 KTYVTPR 7 1 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 RPS9 40S ribosomal protein S9 0 ; 128.69 0.005986399999999999 2139900000.0 2628900.0 2241800.0 1619340.0 1855150.0 1773510.0 2279500.0 1340860.0 1772930.0 2855200.0 2309500.0 False True 2614746.2944982466 2316416.957803285 1847328.9964443995 2090011.7997871838 1999355.9860826642 2121923.5303658205 1275997.4792173784 1905235.0393561248 2151574.2177198594 2162105.732737573 1.2093517236030626 1.0713708042715975 0.8544119598190901 0.9666556857702299 0.9247262776326663 0.9814152463668485 0.5901642366036192 0.8811942036450694 0.995129047179215 1.0 21.044005645757647 4.448056526502977 2.6765566637159237 0.883927222752796 1.2073656658936363 0.427437848055953 0.11518463222920437 0.2697343610178931 3.541367762284135 0.029762097765363767 0.14440715780296157 28057.98808775165 -4.448056526502977 0.32343844314084025 KVADLYELVQYAGNIIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVADLYELVQYAGNIIPR 18 1 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 109.38 0.00058376 59361000.0 120100.0 145050.0 142470.0 143490.0 135960.0 143290.0 167470.0 129670.0 180060.0 171290.0 False True 119453.39494436451 149877.90156542347 162528.5376285607 161655.81928763885 153273.70010194404 133384.6995683783 159368.83630247324 139346.6338509183 135686.62568038612 160358.12555125298 0.744916383461874 0.9346448834457106 1.0135347807904753 1.0080924725948552 0.9558212256163805 0.8317925836925953 0.9938307507313464 0.8689714560574664 0.8461474915221464 1.0 17.29093793327088 1.6332952415266293 24.999999999999996 0.8931707965026697 0.930526888694812 0.004845788467352841 0.08716656254115746 3.2730503087762113 3207.3540601307977 0.04047134656333368 0.02243154012976936 42.982853295485775 -1.6332952415266293 0.03735609219214231 KVAGAAT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVAGAATPK 9 1 P16402 P16402 HIST1H1D Histone H1.3 1 KVAGAAT(1)PK 56.563 0.070975 308140000.0 1076400.0 488630.0 456100.0 434410.0 260490.0 507990.0 478970.0 502230.0 917530.0 751770.0 True False 1070604.7819992828 504893.75416692696 520314.91550773144 489406.26145893964 293661.8574548064 472873.8469798344 455800.3912569147 539708.9528722658 691417.0257721008 703791.3949773213 1.5211961806293206 0.717391201100429 0.7393027525215734 0.6953854010600827 0.41725695930719536 0.6718948972018507 0.6476356410575356 0.7668592664302996 0.9824175610933418 1.0 19.424788349281084 4.738573191679601 9.856911720001088 0.7153702062750427 1.5233312327076354 0.6856887842923653 0.1585248511216408 0.0404097589099618 120.5642951782072 0.037377308972159115 0.2169604558524441 54773.8403575497 -4.738573191679601 0.8079610264325927 KVASGVLS(ph)PPPAAPPPSSSSVPEAGGPPIKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVASGVLSPPPAAPPPSSSSVPEAGGPPIKK 31 2 F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3;Q8IXM2-2 F8W038;Q8IXM2-2 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 KVAS(0.008)GVLS(0.992)PPPAAPPPSSSSVPEAGGPPIKK;KVAS(0.04)GVLS(0.96)PPPAAPPPSSSSVPEAGGPPIKK 110.79 5.2397e-05 3005600000.0 2117590.0 1680350.0 1445920.0 1379250.0 1440700.0 2103100.0 2187650.0 1942940.0 3386500.0 2578000.0 True False 2106189.1307263686 1736279.4339569728 1649492.9678380613 1553862.9085823111 1624164.6053020805 1957717.647164887 2081825.0118654426 2087932.0488494122 2551942.4517751145 2413469.8328631585 0.872680943448025 0.7194121137603704 0.6834529047670869 0.6438294307324842 0.6729583205004448 0.811163089965951 0.8625858850681065 0.865116282134112 1.057374911849502 1.0 21.20267736327026 1.7799301334671398 1.0689334544865985 1.0221988136095153 0.7167725387759423 0.7299865489556853 0.0691040157323006 0.2621625685454265 0.5559306603545124 0.060806162749998116 0.024801607502264563 60.24626579190002 -1.7799301334671398 -0.305426274833573 KVCGDSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVCGDSDK 8 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ; 112.75 0.0047803 481320000.0 885210.0 581570.0 524670.0 412360.0 465340.0 438140.0 660240.0 669490.0 1028380.0 792890.0 False True 880444.1277160774 600927.2058835113 598538.9754866079 464564.7337197763 524598.2907137302 407852.4130706208 628301.668838269 719450.7434013353 774949.5285860018 742287.0813727189 1.1861234686825792 0.80956171939866 0.8063443248664974 0.6258558789150043 0.7067323463902744 0.5494537400763803 0.8464402582304739 0.9692351671685406 1.0440024459982247 1.0 19.50161773509909 1.7558896226713843 3.1741103814742573 1.013445639063833 0.7690499876473805 0.27978783413210273 0.15917384371398308 0.29564479879470396 6.068506606801966 0.09363417062178087 0.04512205908331719 57.00193816242736 -1.7558896226713843 -0.24439565141645236 KVDAETVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 KVDAETVGR 9 1 P11172-2;P11172-3;P11172;P11172-4;E9PFD2 P11172-2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 0 ;;; 139.86 0.00017715 1419040000.0 1381630.0 1527740.0 1371220.0 1424430.0 1526740.0 1707030.0 1494710.0 1476920.0 1967320.0 1784850.0 False True 1374191.4575935223 1578589.9023616659 1564275.8571421008 1604762.6919499033 1721161.2893030462 1589027.034016395 1422405.1669533013 1587135.2700477995 1482500.3467374058 1670939.3449130363 0.8224065474172204 0.9447320198470898 0.9361655537673111 0.9603955384947996 1.0300561145698701 0.9509782858689557 0.8512608020653976 0.9498461298907301 0.8872257100478785 1.0 20.6722279338535 4.73909481094697 23.677914991061712 0.942973016839015 0.8224064914698788 0.3734666481311286 0.04776896425394965 23.716834476661727 1050622.6019190636 0.011602492070123427 0.06872257720182272 54839.667248104444 -4.73909481094697 -0.12056652536913626 KVDEGAGDSAAVASGGAQTLALAGS(ph)PAPSGHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 33 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK;KVDEGAGDSAAVASGGAQTLALAGS(0.999)PAPS(0.001)GHPK 242.92 2.5676999999999995e-47 1974790000.0 564080.0 472076.0 445619.0 396683.0 435651.0 640030.0 581890.0 547050.0 811550.0 659800.0 True False 561043.0559551793 487788.764284032 508358.2818102171 446903.0271271758 491128.57254421955 595786.2325685625 553741.7576643347 587873.6488636143 611554.3767128586 617690.9991168 0.908290806823123 0.7896970572365348 0.8229977165558323 0.7235058107794612 0.7951039811919801 0.9645376627155684 0.8964704981230056 0.9517277242248636 0.9900652228821274 1.0 19.236525782586178 2.7396802918971273 24.963589764128148 0.951801580296908 0.8030548121007689 0.6974257595654563 0.050052932661006765 57.80177609171528 1288726.3010355898 0.015748002262010608 0.015869704273314918 549.1364754024577 -2.7396802918971273 -0.14874676819613908 KVDIEVLSVLASLGASVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVDIEVLSVLASLGASVHK 19 1 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A1B0GTG9;A0A1B0GWF8;P30566-2;A0A096LNY5;A0A096LNY6;A0A096LP92;A0A096LPA2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 0 ; 169.39 9.2305e-12 204876000.0 124595.0 165123.0 189292.0 177455.0 176771.0 228598.0 230177.0 224729.0 261692.0 232421.0 False True 123924.19436380595 170619.01923603853 215942.6682444412 199920.78480512873 199281.739046196 212795.55832181024 219042.45914847075 241499.4191307396 197201.51309314414 217587.69279437087 0.5695367820316901 0.7841391075242494 0.9924397169306617 0.9188055732272593 0.9158686159447688 0.9779760775482399 1.0066858852879823 1.1098946637527256 0.906308213302797 1.0 17.73123743154591 5.1285972720741775 0.9135506538313728 0.9998152142074797 1.8843584614597224e-16 0.8228399488131743 0.059530465460618895 1.6051209267893154 0.6473616156369771 0.020385341548612185 1.8844394905091393 134461.28956160808 -5.1285972720741775 -0.9998152142074794 KVDKIEELDQENEAALENGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVDKIEELDQENEAALENGIK 21 2 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87 P43243 MATR3 Matrin-3 0 148.24 5.1702e-08 73296000.0 232750.0 203180.0 176420.0 170900.0 173880.0 273930.0 264100.0 232940.0 424150.0 247230.0 False True 231496.89986095612 209942.72347509654 201258.4025298706 192535.9224772282 196022.5873324955 254993.8638618598 251324.47404002593 250323.16564535286 319623.91581881477 231451.56973574785 1.0001958514485774 0.907069775827365 0.8695486609127374 0.8318626773499515 0.8469270161196045 1.1017158542194836 1.0858620415794429 1.081535830286876 1.380953761444499 1.0 17.820350821652053 2.6796435454427296 5.329387755332905 1.129290217088041 0.8875595668004115 0.5814972888121628 0.10140955487918564 0.15597163131960345 9.403569667769805 0.03289697820780678 0.031221549051750067 478.2374097341218 -2.6796435454427296 -0.24173065028762952 KVDQPPEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVDQPPEAK 9 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ; 76.92699999999998 0.054592 329460000.0 1053880.0 989900.0 946480.0 934040.0 870400.0 1163240.0 1187680.0 991320.0 1591170.0 1150610.0 False True 1048206.0271770745 1022848.2230928146 1079736.1570483623 1052289.3682307207 981240.280735011 1082827.9567724236 1130227.3810218032 1065297.332220963 1199047.4740856367 1077177.0847132173 0.9731046473720187 0.9495636674866074 1.0023757211060855 0.9768954270976508 0.9109368317060438 1.0052460009959372 1.049249373256682 0.9889714025104636 1.1131386761767825 1.0 20.03882401348337 2.485946321109095 21.819334159468294 1.0316017290954866 0.9641823130800203 0.4624697969527467 0.03811099701003156 74.88126182130291 185141.950737876 0.012413521063972238 0.010918022679365404 306.1584997742858 -2.485946321109095 -0.0674194160154663 KVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLR 35 2 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 0 ;; 271.92 2.922499999999999e-74 789600000.0 675080.0 508942.0 482045.0 446950.0 444738.0 664760.0 621210.0 607550.0 925190.0 642432.0 False True 671445.4442884388 525881.826808064 549912.7459897483 503533.824173184 501372.74813135044 618806.7058767193 591159.6990473486 652888.4660763895 697189.321410842 601431.4397462928 1.1164122789651314 0.874383665459693 0.9143398725908358 0.837225643517396 0.8336324225797856 1.0288898534099848 0.9829211776769149 1.0855575929848351 1.1592166211080412 1.0 19.19804076100603 2.1886287723434426 1.644484871763233 1.0854554028054064 0.912786165249157 0.36867976358155763 0.08770263039868718 0.373874172517957 1.979742904106267 0.04888831592470414 0.028543649010107728 154.3934146261236 -2.1886287723434426 -0.1726692375562494 KVDWLTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVDWLTEK 8 1 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3QL52;Q14240;Q14240-2;E7EQG2;P38919;I3L3H2;J3KTN0 P60842;Q14240;P38919;J3KTN0 EIF4A1;EIF4A2;EIF4A3 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ; 152.97 0.00071916 11135100000.0 17840100.0 18478200.0 18430700.0 15276000.0 13786100.0 18050700.0 19392700.0 17719600.0 28789000.0 19646500.0 False True 17744050.883821435 19093235.716692224 21025582.357483786 17209940.033716444 15541678.118383441 16802897.59577727 18454601.013691835 19041926.5303056 21694336.702835888 18392643.54978512 0.9647362999120775 1.0380908902524395 1.143151733494527 0.9356969261722852 0.8449942541601104 0.9135662065268251 1.0033686002634157 1.0353012321890003 1.1795116152886758 1.0 24.132625515471634 1.5868034126720043 3.2727404458510048 1.0934755278651012 0.9770058304810583 0.21686075575117025 0.08486312148960477 0.3160928038986169 7.863078447853015 0.059357990083024816 0.024252260325654508 38.61921241222979 -1.5868034126720043 -0.11646969738404289 KVEAPETNIDKT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEAPETNIDKTPK 14 2 O75152;E9PBY7;E9PQ61 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 KVEAPETNIDKT(1)PK 128.79 0.003416300000000001 142380000.0 814200.0 209780.0 177700.0 189740.0 128520.0 336050.0 285980.0 305030.0 889360.0 430240.0 True False 809816.4376661247 216762.40048531216 202718.6154039113 213761.06454551936 144886.26020227894 312819.6544766105 272146.0548503089 327792.88751095574 670189.1448134405 402781.71485300397 2.01055908896378 0.5381634580021093 0.5032964703422396 0.5307119381611748 0.35971409540067 0.7766481022873014 0.6756663592577166 0.8138226623087507 1.663901612460306 1.0 18.619638665006757 1.3641309969737117 6.894519855209971 1.3258010745065014 0.7302596910163619 0.1848202257584407 0.46168613878403014 0.31786458704198944 17.318393029022822 0.30320215004723255 0.11005529554056306 23.127622873483045 -1.3641309969737117 -0.5955413834901395 KVEDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEDAK 6 1 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 82.671 0.094005 186150000.0 220540.0 183390.0 184520.0 161020.0 172380.0 195830.0 194470.0 186610.0 272900.0 219500.0 False True 219352.6371442973 189494.02528840385 210498.8121234086 181405.11549024758 194331.57122369204 182292.73303423493 185062.74315245685 200535.7857863795 205647.45167265003 205491.32207659568 1.0674545033222127 0.9221509861023283 1.024368377195736 0.8827872323612279 0.9456923497297667 0.8871067215494696 0.9005866587566934 0.9758844498145327 1.0007597868098592 1.0 17.64871794444397 4.74549472285406 24.340409132908796 0.9455457487771226 1.0674545860355387 0.352724778071981 0.04803093602247641 616.0126095134176 2162274.464456565 0.011258418324235117 0.110261416564317 55653.787168231946 -4.74549472285406 0.12190883725841606 KVEDLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEDLAR 7 1 Q9NVP1;H7C452 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 0 84.476 0.034502 342700000.0 371640.0 423890.0 471360.0 366990.0 292610.0 444030.0 489970.0 422740.0 849510.0 512090.0 False True 369639.1315330853 437998.9224030843 537723.3908654334 413450.8963716674 329872.1490646503 413335.2512341895 466268.27923283476 454287.00543022447 640159.6433507988 479407.9777776935 0.7710324998064402 0.9136246009785615 1.1216404728141203 0.8624197250288332 0.6880823105901994 0.8621785001372201 0.9725918233447677 0.9476000118648049 1.3353128713424278 1.0 18.870894391359926 1.4085381061511717 5.175668489258892 1.168329601589854 0.89156964950235 0.4120036961361886 0.13241926980920035 0.19916416025218292 8.663920366016347 0.0927390361430296 0.033883396600556476 25.617580296796678 -1.4085381061511717 -0.27675995208750415 KVEEAEPEEFVVEK ddPTM_BT-474_Trastuzumab_2h_R1 5 KVEEAEPEEFVVEK 14 1 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 CBX3 Chromobox protein homolog 3 0 ;;;; 224.59 4.9558e-12 12972360000.0 12132600.0 10457900.0 9542300.0 9110050.0 9230800.0 12379200.0 12270800.0 12553400.0 18834700.0 12934800.0 False True 12067279.429658579 10805984.879565941 10885772.896841556 10263381.39592552 10406287.664761877 11523455.04150234 11677214.524991855 13490198.45287358 14193140.55704967 12109289.98996057 0.9965307164716659 0.8923714675695141 0.8989604597682116 0.8475626072572847 0.8593639819832047 0.9516210323690384 0.9643186788550827 1.1140371123375423 1.1720869323318506 1.0 23.529610941465723 1.933548651404688 2.24831152350389 1.1091835536979664 0.900462910203349 0.680605101070966 0.05703899088280578 0.15988089310535775 1.4834357725717475 0.032316101969347755 0.016393103216036237 85.8121239511399 -1.933548651404688 -0.20872064349461739 KVEEDEAGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEEDEAGGR 10 1 Q92890;Q92890-1 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 0 187.31 1.9952e-06 1199600000.0 1744400.0 1754600.0 1621900.0 1632700.0 1582800.0 1812000.0 1909700.0 1792600.0 2333300.0 1999300.0 False True 1735008.3442210604 1813000.8003219 1850249.4221924813 1839399.652595499 1784360.1980093939 1686740.7049891958 1817320.5152375526 1926372.9146383568 1758289.4796181545 1871702.9623131522 0.9269677823648058 0.9686370309962512 0.9885379568485817 0.9827412199648757 0.953335135936412 0.9011796951502551 0.9709449372199578 1.0292086690174602 0.9394062599789685 1.0 20.83592006792069 1.992698272749235 24.984810869468046 0.9946069921454749 0.9553988532362433 0.20032746278848934 0.03169674713325681 495.3359828432481 1694924.7456494237 0.012581733599630433 0.008901860731904687 98.332769884521 -1.992698272749235 -0.03920813890923158 KVEEDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 KVEEDLK 7 1 P50502;Q3KNR6;Q8NFI4;F6VDH7 P50502 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 0 ;;; 87.30799999999998 0.031167 558230000.0 1676190.0 1375370.0 1150970.0 1057910.0 1208580.0 1647140.0 1589740.0 1470710.0 2239950.0 1645070.0 False True 1667165.5792822167 1421148.359021277 1313016.571589418 1191841.2975300436 1362485.4991851097 1533277.0887504967 1512838.20280345 1580461.8483140585 1687944.336292241 1540080.2241847145 1.0825186591593166 0.9227755390298596 0.8525637502322327 0.7738826061226641 0.8846847571894383 0.9955826097060501 0.9823112971951277 1.0262204679309619 1.096010655669449 1.0 20.55457407350339 2.591548210943912 2.992832386450483 1.024863267772823 0.8945391683289154 0.36208597222039285 0.07763041019742067 0.3057918302553944 5.262754859075954 0.029168687820189377 0.026779866481435228 390.43452216057165 -2.591548210943912 -0.13032409944390766 KVEEDLKADEPSS(ph)EES(ph)DLEIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVEEDLKADEPSSEESDLEIDK 22 2 P50502;Q3KNR6;F6VDH7 P50502 ST13 Hsc70-interacting protein 2 KVEEDLKADEPS(0.011)S(0.989)EES(1)DLEIDK;KVEEDLKADEPS(0.005)S(0.995)EES(1)DLEIDK 285.22 2.9301e-46 610920000.0 1346560.0 633650.0 614030.0 447680.0 535710.0 954850.0 874410.0 922010.0 1567520.0 841300.0 True False 1339310.2705768796 654740.6572004855 700480.0867555636 504356.2420983349 603929.4930980619 888843.466975128 832111.4477294165 990815.0680719137 1181225.6996918726 787607.513726832 1.7004792961401283 0.8313032135795125 0.8893771003288231 0.6403649448591499 0.766789908136306 1.1285360429959128 1.0565052176711711 1.2580061144713262 1.4997643865819699 1.0 19.58711734896314 2.0302673031975527 1.8186066295854886 1.2779159380796596 0.9468231519666015 0.1273994610304432 0.2941658122173652 0.6188281052565617 3.8436873575163744 0.17528943294020433 0.09081538297994264 107.21790158966353 -2.0302673031975527 -0.33109278611305815 KVEEDLKADEPSSEES(ph)DLEIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEEDLKADEPSSEESDLEIDK 22 2 P50502;Q3KNR6;F6VDH7 P50502 ST13 Hsc70-interacting protein 1 KVEEDLKADEPSSEES(1)DLEIDK 209.68 2.8155999999999996e-23 303890000.0 431420.0 200620.0 201890.0 161460.0 164970.0 282610.0 250960.0 262120.0 495260.0 268600.0 True False 429097.28265526786 207297.51542264898 230314.35714066174 181900.8194451331 185977.951646203 263073.8358923821 238820.10603970065 281680.72541839 373209.80914399656 251457.71803997047 1.7064391023665486 0.8243831887064926 0.9159168345910628 0.723385310512597 0.7395992976307885 1.0461951136077883 0.9497425964938527 1.1201912099338125 1.4841851427470323 1.0 17.93995630944869 1.5505725768150727 4.177249286790009 1.2592478968204677 0.961611286222773 0.1095473236013983 0.2844749751482655 0.31448123348482987 12.211244906332643 0.16967645325716663 0.07210998161232213 35.52814861357777 -1.5505725768150727 -0.29763661059769464 KVEEEEDESALKR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVEEEEDESALKR 13 2 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 ;; 145.49 2.3526e-05 1362780000.0 3885610.0 2976170.0 2750440.0 2580290.0 2561380.0 3900540.0 4072810.0 3495980.0 5878910.0 3815020.0 False True 3864690.3074918576 3075230.019317246 3137678.044746957 2906954.4494369025 2887556.560511313 3630904.850683528 3875792.6206549015 3756867.7798267365 4430131.403858033 3571542.157397056 1.0820788715842706 0.8610370209261304 0.8785219119557307 0.8139213598294733 0.8084901236657297 1.016621025503934 1.0851874204054148 1.0518895239821966 1.2403973433948539 1.0 21.768115719887433 2.5205852525458052 3.9959997102855715 1.090815263603801 0.8830232286626849 0.5319762335755016 0.09114575596167707 0.17410080781461224 5.88389105962574 0.031204884476337385 0.028083899297619244 331.577652528441 -2.5205852525458052 -0.2077920349411162 KVEEEGS(ph)PGDPDHEASTQGR ddPTM_BT-474_Trastuzumab_2h_R1 6 KVEEEGSPGDPDHEASTQGR 20 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR 164.83 8.2586e-12 6986490000.0 6061790.0 5525880.0 5375700.0 4896540.0 5193560.0 6700460.0 6555390.0 5843500.0 7905710.0 6491220.0 True False 6029153.996168178 5709805.575335006 6132551.833577978 5516441.461946441 5854929.081358149 6237272.971386264 6238280.741678333 6279571.642691756 5957453.701586608 6076944.782186965 0.9921357215292009 0.9395849032678172 1.00915049476079 0.9077656058545243 0.9634659012404391 1.026383025508025 1.0265488605333857 1.0333435414945253 0.9803369810187159 1.0 22.534914752300292 2.746289572888898 22.26054385674052 1.0179455220032065 0.9607115876409701 0.4218861149462101 0.029512296132368863 112.11481941354369 322906.2468746083 0.008734551092184632 0.00908058198370836 557.5573854496545 -2.746289572888898 -0.05723393436223645 KVEEELR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVEEELR 7 1 Q5T7U0;Q5T7U4;Q9Y5Q8-2;Q9Y5Q8;Q9Y5Q8-3;H7BY84 Q5T7U0 GTF3C5 General transcription factor 3C polypeptide 5 0 ;; 75.38 0.06995499999999999 1292200000.0 1629040.0 1680750.0 1600970.0 1532540.0 1527270.0 1850850.0 1831320.0 1714080.0 2222620.0 1915410.0 False True 1620269.4296433586 1736692.7477151698 1826372.6601192998 1726559.4068651346 1721758.7816614902 1722905.095932256 1742732.0552782286 1841993.3535218756 1674885.0825821364 1793166.8939349966 0.9035798257951189 0.9685059174297505 1.0185179451486723 0.9628548311397296 0.9601776541185156 0.9608169221501991 0.9718738736325364 1.0272291774692162 0.93403747763082 1.0 20.774078338538384 4.713158308488703 4.1287019798149345 0.9811601972946624 0.8988305989996362 0.4064946778563199 0.027200382236267154 0.19392665820068405 7.073855731273474 0.006584803075857337 0.04495217930196763 51660.46470431398 -4.713158308488703 -0.08232959829502617 KVEEEQEADEEDVS(ph)EEEAESK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVEEEQEADEEDVSEEEAESK 21 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK 240.4 3.5669999999999994e-30 3091300000.0 1436120.0 1382810.0 1302240.0 1092580.0 1406960.0 2318760.0 1595690.0 1441450.0 2293030.0 1791050.0 True False 1428388.0894879303 1428835.9949237038 1485584.0727270076 1230900.515975248 1586128.016294731 2158469.5789739215 1518500.3785722416 1549018.318534788 1727943.4815277993 1676743.6556049478 0.8518822091338619 0.8521493372868603 0.8859935552826217 0.7341017882254367 0.9459573686130789 1.2872984917871497 0.9056246454228485 0.9238253643344915 1.0305352733864255 1.0 20.67723071257584 3.007548853807634 24.523343306305723 1.0171553711524395 0.836911366828913 0.44498952794462776 0.10394008835211924 151.45537862200825 492014.64392515895 0.031427361568823996 0.03749065998758938 1017.5338221726165 -3.007548853807634 -0.1802440043235265 KVEEVLEEEEEEYVVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVEEVLEEEEEEYVVEK 17 1 P83916;J3KS05;K7ELA4;B5MD17;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 0 ; 170.61 2.9318e-09 377160000.0 562753.0 433478.0 402452.0 380989.0 421449.0 555255.0 495041.0 596272.0 832042.0 580537.0 False True 559723.2003757354 447906.05318701593 459113.7434245071 429222.16833631776 475118.03202606906 516871.52877967764 471093.9755897335 640768.8444478653 626996.3978915903 543486.6316372685 1.0298748263403532 0.8241344443702076 0.8447562767853448 0.7897566257393933 0.8742037142565271 0.9510289650043239 0.8667995644539589 1.1789965146291297 1.1536556032716874 1.0 19.051885023566463 1.7551698497489494 9.20038527829162 1.122410236357262 0.8778285991563788 0.6452332418866608 0.07721128777829729 0.07506101849918193 25.429331958635977 0.0359912062455037 0.01956804455609422 56.90754490374122 -1.7551698497489494 -0.2445816372008831 KVEEVVYDLSIR ddPTM_BT-474_Trastuzumab_2h_R1 4 KVEEVVYDLSIR 12 1 E9PGT1;Q15631 E9PGT1 TSN Translin 0 ;;; 201.95 2.2825e-07 1534530000.0 2543440.0 2699410.0 2583270.0 2538690.0 2363930.0 3058330.0 2945230.0 2575740.0 3590400.0 3095110.0 False True 2529746.401642749 2789258.230022197 2946971.9618146406 2860087.893702251 2664962.473389153 2846914.845634439 2802757.9730287986 2767954.798142704 2705594.0288951327 2897577.4299430125 0.8730556690222778 0.9626173234228479 1.0170468375965365 0.9870617655102666 0.9197208833316891 0.9825155373640628 0.9672762991820796 0.9552651706695349 0.9337434785818112 1.0 21.46641578320553 7.999799914149994 0.004508394815940175 1.8693548109389977 2.145826843233937e-07 0.10091763110211494 0.037983274238238954 209471.44284472734 73.05232991820014 14162.961515923242 16190.213467547575 99953939.14171766 -7.999799914149994 -1.8693545963563134 KVEGAPTQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEGAPTQGR 10 1 Q9P2E9;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 106.67 0.0038259 150280000.0 191630.0 178020.0 151450.0 150370.0 167880.0 238180.0 206090.0 162010.0 265920.0 192130.0 False True 190598.2853720943 183945.28808463755 172772.8435730015 169406.82658221648 189258.52289728148 221715.17721541197 196120.63935974622 174100.00887011053 200387.57914544197 179868.09890923134 1.0596558618673 1.0226676614704409 0.9605530086810425 0.9418392011120659 1.0522072788059484 1.2326542536444907 1.0903581043502137 0.9679315561008313 1.1140807089230735 1.0 17.456579809850346 3.0145154705919266 23.73078329164607 1.077765064588948 0.9957133443307778 0.23355310034333665 0.07247946584367616 216.22166358252846 353487.66243838985 0.02277765459493474 0.027210257451862594 1033.9879334108962 -3.0145154705919266 -0.0820517202581702 KVEGAQNQGK ddPTM_BT-474_Trastuzumab_2h_R1 4 KVEGAQNQGK 10 1 Q9P2E9 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ;;; 135.99 0.00020786 620674000.0 732918.0 706190.0 705011.0 622903.0 662018.0 650893.0 859200.0 775238.0 1115950.0 879787.0 False True 728972.0509228447 729695.10724913 804270.4207345357 701762.4559323163 746322.0682118925 605898.2989473135 817637.2135372591 833090.1961387987 840939.0754638818 823638.2404364538 0.8850633872178584 0.8859412681743111 0.9764850406998405 0.8520275303881538 0.9061284816212628 0.7356364350278857 0.9927140016034045 1.0114758582570622 1.021005380976799 1.0 19.65165128838864 2.0332798213084535 24.997945430970102 1.0096004818370385 0.8780324035771808 0.5717303066728869 0.05636747247347537 133.74547067531392 100461.60885757866 0.02095947077857322 0.015479524009210377 107.96421249575933 -2.0332798213084535 -0.13156807825985772 KVEGNFNPFAS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVEGNFNPFASPQK 14 1 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 KVEGNFNPFAS(1)PQK;KVEGNFNPFAS(1)PQK 142.98 5.6665e-06 1167740000.0 1676650.0 1240510.0 1248710.0 1026010.0 955910.0 1764920.0 1797310.0 1556020.0 2516600.0 1963120.0 True False 1667623.1026933289 1281799.6254458707 1424517.5140181098 1155902.7608008233 1077639.4723775329 1642915.2345747948 1710367.2489090462 1672138.1137094595 1896417.6507123157 1837832.0008884103 0.9073860406648692 0.697452011297141 0.7751075796533613 0.6289490879699877 0.586364516373967 0.8939420109023064 0.9306439587961536 0.9098427456378744 1.031877587176404 1.0 20.80957346295732 2.559287152373472 5.790503528109765 0.9495856348343619 0.7163792628510421 0.6472849326155764 0.08732901789535491 0.1522659908833769 8.365097352801865 0.02929937990353701 0.027376256402228398 362.482590069298 -2.559287152373472 -0.23320637198331973 KVELS(ph)ES(ph)EEDKGGK ddPTM_BT-474_Trastuzumab_2h_R1 9 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK 119.01 0.00013108 7118010000.0 9831770.0 5374400.0 3553454.0 4179740.0 4361540.0 8250300.0 7462320.0 7608650.0 15810250.0 7245010.0 True False 9778836.842732348 5553283.655106599 4053749.43602414 4708894.655441608 4916956.266127053 7679976.180117188 7101339.07276928 8176446.098941842 11914025.733996026 6782627.259034874 1.441747639855388 0.818751118559447 0.5976665503215289 0.6942582093346016 0.7249338756714615 1.1323010813968866 1.0469894336755514 1.2054983690944119 1.756550268647863 1.0 22.69341278064903 2.043251940891778 1.4042921781642312 1.3566199657534594 0.8449609448952813 0.31095871622112803 0.28463357410950396 0.48197297580677234 1.7788025259263152 0.1927800062394747 0.09448348495996499 110.47192986637693 -2.043251940891778 -0.5116590208581782 KVELS(ph)ESEEDKGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 KVELS(0.532)ES(0.468)EEDKGGK;KVELS(0.951)ES(0.049)EEDKGGK;KVELS(0.989)ES(0.011)EEDKGGK;KVELS(0.998)ES(0.002)EEDKGGK;KVELS(0.545)ES(0.455)EEDKGGK;KVELS(0.5)ES(0.5)EEDKGGK 219.79 2.5455e-12 9579500000.0 6632670.0 3829120.0 3323650.0 3059190.0 3139370.0 5225490.0 5245120.0 4996920.0 9222180.0 4808900.0 True False 6596960.441678906 3956569.9444480804 3791591.0303163156 3446483.1403341843 3539150.1609961824 4864264.1757803485 4991393.507295797 5369815.5442456305 6949497.30988083 4501991.884893578 1.4653425884251348 0.878848750866109 0.8422029908669959 0.765546280058578 0.7861298401873605 1.0804693344966647 1.1087077975516582 1.192764376644932 1.5436494528566014 1.0 22.102132025575518 2.0830659225262864 1.7270226467061094 1.2677796648179487 0.933594681880185 0.23470043090139037 0.22538834485858644 0.4862359640972639 2.7591661580087954 0.13265091070087123 0.0710153886168364 121.07819068836812 -2.0830659225262864 -0.33418498293776366 KVELSSSSQHGPSYDVYNPFYMYQHIS(ph)PDLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVELSSSSQHGPSYDVYNPFYMYQHISPDLSR 32 1 Q8N9U0;Q8N9U0-2 Q8N9U0 TC2N Tandem C2 domains nuclear protein 1 KVELSSSSQHGPSYDVYNPFYMYQHIS(0.995)PDLS(0.005)R;KVELSSSSQHGPSYDVYNPFYMYQHIS(0.998)PDLS(0.002)R;KVELSSSSQHGPSYDVYNPFYMYQHIS(0.998)PDLS(0.002)R 246.41 1.6830999999999996e-47 1754380000.0 397145.0 699600.0 788620.0 774740.0 911490.0 902330.0 801650.0 642190.0 752570.0 732550.0 True False 395006.81544695795 722885.7630828698 899650.8411920784 872822.004564118 1027562.8486755006 839954.0509563461 762871.1268996096 690113.4787747451 567109.207421349 685798.0318323915 0.5759812614094776 1.054079670003402 1.3118305965216774 1.2727099875629784 1.4983461616679532 1.2247834084796998 1.1123845381435196 1.0062925916115903 0.8269332676649472 1.0 19.38742423833456 1.6739995385476698 2.5601107224045685 0.9147617341573911 1.177438232051755 0.14647697642395074 0.22963059051878146 0.4542170643221278 6.669780398189096 0.15999650655004963 0.06683898604818486 47.20625396811764 -1.6739995385476698 0.26267649789436376 KVENEDMNK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVENEDMNK 9 1 Q15019-2;Q15019-3;Q15019;B5MCX3 Q15019-2 SEPT2 Septin-2 0 ; 149.33 0.00014091 182540000.0 475500.0 367360.0 347370.0 325460.0 333980.0 509800.0 447880.0 423380.0 641170.0 463620.0 False True 472939.9608330165 379587.3555261903 396276.67660583364 366663.20262983395 376510.3733454491 474558.72594011656 426214.333332249 454974.76548007835 483162.2447378266 434031.3746749488 1.0896446396005515 0.8745620194173007 0.9130138965244388 0.8447850179135836 0.86747271122375 1.093374243499146 0.9819896860024139 1.0482531725288622 1.1131965865363362 1.0 18.727439808470447 2.7398680345986626 24.999486750214427 1.044669919247325 0.911155320099947 0.4422349042079158 0.07247014833813295 110.07110584532042 2104715.1151089664 0.022390236146765566 0.022605663546319803 549.373914874656 -2.7398680345986626 -0.13351459914737795 KVENEDMNKDQILLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVENEDMNKDQILLEK 16 2 Q15019-2;Q15019-3;Q15019;B5MCX3 Q15019-2 SEPT2 Septin-2 0 237.59 5.1511000000000005e-20 813670000.0 1092600.0 786540.0 734300.0 715000.0 685620.0 1237300.0 1194200.0 1063600.0 1616000.0 1004900.0 False True 1086717.5629992718 812719.5084265299 837683.0573499826 805518.9266893978 772929.6430118775 1151768.3632909115 1136431.9837129845 1142971.2328513649 1217758.4532905899 940766.4216618259 1.1551406788941607 0.8638908550656961 0.8904261866300982 0.8562369023189424 0.8215956960352907 1.22428727978658 1.2079852740763466 1.214936254668138 1.294432310986896 1.0 19.843477042087187 2.730390264730699 24.925335099229848 1.204124564561292 0.9095791599482319 0.5951772398997351 0.11122134639062912 366.88190225382726 1119245.6232836356 0.03436921485707874 0.0329180876478315 537.5145995707194 -2.730390264730699 -0.29454540461306 KVEPPFKPLLQSEEDVSQFDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEPPFKPLLQSEEDVSQFDSK 22 2 P23443-5;P23443;P23443-3;P23443-2;P23443-4 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 0 169.9 4.3674e-12 218410000.0 220650.0 169560.0 143160.0 140510.0 152350.0 216110.0 207010.0 220040.0 299070.0 218290.0 False True 219462.04491651955 175203.7020988153 163315.68363097304 158298.55159318526 171750.86945080297 201170.82436822006 196996.13544500468 236460.50214048004 225368.2058326837 204358.5453125288 1.0739068659002868 0.8573348466092938 0.7991624885625006 0.7746118536472099 0.8404388922819039 0.984401332768181 0.9639730755752608 1.157086442256952 1.1028078394667788 1.0 17.640743045773114 2.2439243604262407 1.7452777743886512 1.0960079068452615 0.8625009164709934 0.4974972330814347 0.08946472200380835 0.27357934974621123 1.6651584472876744 0.04756110788105679 0.029921984134336554 175.35750611164627 -2.2439243604262407 -0.23350699037426814 KVEQLQQEYTEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVEQLQQEYTEMK 13 1 Q14258;A0A3B3IUA7 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 ; 157.38 7.638600000000001e-05 614150000.0 473110.0 402560.0 366930.0 336760.0 358240.0 498120.0 451890.0 434530.0 678620.0 492570.0 False True 470562.8283274626 415958.9662473408 418590.5545872654 379393.7814712195 403859.74054516345 463686.13684835366 430030.35431256134 466956.8350986316 511383.194042117 461133.7608896061 1.0204475756007676 0.9020353778584431 0.9077421565919018 0.8227412817038247 0.8757973820135155 1.0055350012842772 0.9325501422471412 1.0126277334320346 1.1089693217333971 1.0 18.814825767783685 1.8854872742077307 1.2956503113217217 1.0529936697545657 0.9084213503510845 0.4497954211991745 0.05982534756826473 0.39379435786553424 1.227080427414559 0.04661248973128108 0.019999912821088383 76.82229447120486 -1.8854872742077307 -0.14457231940348114 KVEQNSRPVS(ph)CSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEQNSRPVSCSGR 14 2 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 KVEQNS(0.012)RPVS(0.986)CS(0.002)GR 139.9 5.2667e-06 130260000.0 96795.0 54302.0 51929.0 59182.0 48887.0 86128.0 76184.0 78251.0 136120.0 84588.0 True False 96273.86647493538 56109.409243747796 59240.151825040564 66674.43513193287 55112.469674049324 80174.17408350404 72498.68886885772 84090.48697052669 102575.0499145515 79189.52142056976 1.2157399709947976 0.7085458812884451 0.7480806899996333 0.8419603242432774 0.6959565948296496 1.0124341282188696 0.9155086123556989 1.061889066407262 1.2953108956143695 1.0 16.27302192103207 1.8793820431165909 1.484042483104691 1.1468172333845619 0.8412919809470686 0.3276256411489228 0.16094357182681324 0.4195431677213027 1.7294010645444429 0.11250509303382367 0.048841717376507304 75.74989638403021 -1.8793820431165909 -0.3055252524374933 KVEQNSRPVSCSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEQNSRPVSCSGR 14 2 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 0 127.75 4.3718e-05 25181000.0 50813.0 51670.0 54749.0 48663.0 48596.0 61981.0 59927.0 43345.0 62925.0 56034.0 False True 50539.428453855006 53389.80471482542 62457.18331316114 54823.73081047017 54784.41254894142 57696.39935758019 57028.102066628686 46579.62400145023 47417.97690180098 52457.862146879066 0.963429053062579 1.0177655460936812 1.1906162538283496 1.0451003637351215 1.0443508428831534 1.0998618128209936 1.0871221154028963 0.8879436197958259 0.9039250735958951 1.0 15.678871393158015 1.7467695644233774 9.656815864518311 0.923613969821499 1.0670259631825538 0.49119725540808234 0.062009395940924916 0.08316352880505046 35.613469299958474 0.02970624797503341 0.016104353128858395 55.81739504346809 -1.7467695644233774 0.1434119933610548 KVESLWPIFR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVESLWPIFR 10 1 P41223;P41223-2 P41223 BUD31 Protein BUD31 homolog 0 ; 158.05 1.3001e-05 1731350000.0 1732660.0 2092270.0 1850160.0 1832360.0 1735470.0 2043930.0 2091130.0 1887450.0 2524300.0 2058150.0 False True 1723331.551076623 2161909.9421460764 2110646.4461209923 2064336.5881238985 1956471.81756341 1902637.9299936895 1989974.0530076488 2028301.103276898 1902220.0888870305 1926797.1049291338 0.8944021903852746 1.1220226232515487 1.095417073609637 1.0713824423147156 1.0154010573081942 0.9874614847232019 1.0327885836639965 1.0526801696390848 0.9872446268581002 1.0 20.877773230670442 3.224256714553556 24.351378238689612 1.0179578339172273 1.054793761502746 0.056689791580455284 0.05983189475584514 463.05947637067993 788324.3908524209 0.01700595249978381 0.020426493059552613 1675.933239336097 -3.224256714553556 0.03683592758551879 KVEVDGS(ph)LSDSHVSPPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVEVDGSLSDSHVSPPAK 18 1 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 KVEVDGS(0.5)LS(0.5)DS(0.001)HVSPPAK 128.01 1.1394e-05 144960000.0 346900.0 341580.0 344930.0 327150.0 377280.0 495080.0 449360.0 445040.0 572510.0 539530.0 True False 345032.3289442129 352949.28381052957 393493.1458146937 368567.15645655483 425324.37168624206 460856.2848929639 427622.74007809954 478251.1446673299 431422.58174096263 505096.7334851279 0.683101485459066 0.6987756214046509 0.7790451209209408 0.7296961790140085 0.8420651797756386 0.9124119289251618 0.8466155326872461 0.946850599027704 0.8541385305824106 1.0 18.94620018617218 4.7476548644856065 0.22431626113005318 1.0045456035258515 0.3790186422422216 0.8380418146609306 0.04060481703008728 4.166886054512687 0.18571909465924583 0.06857706224736158 0.7361032067973416 55931.29366633004 -4.7476548644856065 -0.62552696128363 KVEWTSDTVDNEHMGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVEWTSDTVDNEHMGR 16 1 O60927 O60927 PPP1R11 Protein phosphatase 1 regulatory subunit 11 0 ; 224.64 4.9393000000000004e-15 381570000.0 416380.0 497980.0 433810.0 458360.0 479150.0 470710.0 453520.0 396850.0 523690.0 486410.0 False True 414138.2563441667 514554.9632647325 494886.67725588457 516388.32900329045 540166.9123554466 438170.9256321538 431581.504985356 426464.9621634675 394633.6165864787 455366.89736344805 0.9094606102068614 1.1299788505576063 1.086786677119602 1.1340049792665068 1.186223494687441 0.9622371063183159 0.947766531744384 0.9365304431057212 0.8666278090730528 1.0 18.79666989383101 2.587120152876115 6.373009821969366 0.9359797729511719 1.09353667034508 0.497612342039773 0.07389265420056632 0.19378796525605213 9.78271336769211 0.02377333528203983 0.022325774702732875 386.4738849882367 -2.587120152876115 0.1575568973939081 KVFAENK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVFAENK 7 1 O95994;B5MC07;C9J3E2;H7C3Z9 O95994 AGR2 Anterior gradient protein 2 homolog 0 81.296 0.044231 1082700000.0 1132200.0 1116000.0 1134200.0 856340.0 823470.0 1001400.0 1181400.0 900280.0 1991800.0 1158600.0 False True 1126104.3609992466 1153145.3853637534 1293885.5013568716 964752.5561974805 928334.0234109149 932175.5750420406 1124251.1686137335 967463.4651292091 1500947.5787525976 1084657.1560726361 1.0382122633816238 1.0631427441451655 1.1928981375477359 0.8894539171167134 0.8558778395675355 0.859419559280182 1.0365037120895055 0.8919532404434909 1.3837990837466836 1.0 20.048807669693055 -0.5599338843416728 6.641239196404081 1.0000005482952863 1.0077754974184596 0.0 0.1590529920599012 0.0 0.0 0.150540381559401 0.03548270821435426 0.27546480305762266 0.5599338843416728 0.007774949123173336 KVFANPEDCVAFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVFANPEDCVAFGK 14 1 P10620;F5H7F6;F5H6X2;P10620-2 P10620 MGST1 Microsomal glutathione S-transferase 1 0 ; 172.91 4.4619e-06 1490820000.0 1610050.0 2223290.0 2368610.0 1757880.0 2599880.0 3194700.0 2245290.0 1996180.0 3120100.0 2629740.0 False True 1601381.6696933734 2297290.863642814 2702089.6996728065 1980427.4277605026 2930959.3073039297 2973857.908514887 2136676.744859258 2145145.0879966547 2351193.162198001 2461907.741766312 0.650463720685346 0.9331344244421634 1.097559284546615 0.8044279621703581 1.1905236161291297 1.2079485587795717 0.8678947259519503 0.871334474320149 0.9550289486116657 1.0 21.231345268193614 4.714914991143342 3.770875017407567 0.9901618898081345 0.6231531322305461 0.39599317123951794 0.12822318049491663 0.25742903174059917 7.031228389598703 0.032802034149592194 0.25238699930061886 51869.849888196855 -4.714914991143342 -0.36700875757758833 KVFASLPQVER ddPTM_BT-474_Trastuzumab_2h_R1 2 KVFASLPQVER 11 1 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ; 180.09 1.0932e-05 2631700000.0 2000700.0 2373650.0 2267790.0 2078780.0 2010020.0 2516230.0 2422020.0 2095610.0 3013800.0 2404450.0 False True 1989928.453498667 2452655.505348272 2587075.120015959 2341953.3348578857 2265984.1326780682 2342288.9426682983 2304857.6395850955 2251995.0594919594 2271089.3728509815 2250995.942446789 0.8840213418313201 1.089586817594297 1.1493024359714565 1.0404076216646698 1.0066584705679156 1.040556714696818 1.0239279405718342 1.000443855551372 1.0089264622939975 1.0 21.102132025575518 2.2123081742792197 1.069097369424742 1.001399035437705 1.045793223988607 0.036538770957465494 0.06345852712501639 1.5970659058331045 3.4738612648920864 0.04585846823365449 0.025291188735403463 163.04525873291135 -2.2123081742792197 0.04439418855090205 KVFS(ph)PVIR ddPTM_BT-474_Trastuzumab_2h_R1 4 KVFSPVIR 8 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 KVFS(1)PVIR;KVFS(1)PVIR;KVFS(1)PVIR;KVFS(1)PVIR 133.07 0.00057282 2918450000.0 3341490.0 3654050.0 3198060.0 3190700.0 3377490.0 3544330.0 3499590.0 3311010.0 4548640.0 3647180.0 True False 3323499.789114439 3775672.845330133 3648319.0499641644 3594642.292850154 3807593.3315483616 3299318.8095553825 3330301.4619679456 3558094.379168107 3427688.620653288 3414413.8498921087 0.9733734500928929 1.1058041032282715 1.0685052282339609 1.0527845922847754 1.1151528487587048 0.9662914206078554 0.9753654970891062 1.0420805841332148 1.0038878622641478 1.0 21.703206502617114 2.7304861347031073 24.99995660379498 1.0017292119656622 1.0652197001132058 0.3947100910721002 0.04040834356694399 651.3311383250308 2016625.6529944988 0.012768728125128498 0.012226578243229227 537.6332683545852 -2.7304861347031073 0.06349048814754354 KVFVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVFVGR 6 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;H0YBN4;Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;K7EN94;A0A0A0N0M3;A0A087WXQ5;Q13148-4;A0A087WV68;A0A087WXV3;K7EJM5;A0A087WX67;A0A087WW61;A0A087WZC9;A0A087WZM1;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YCC8 P11940-2;Q13148;B1ANR0 PABPC1;TARDBP;TDP43;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;TAR DNA-binding protein 43;Polyadenylate-binding protein 4 0 ; 138.38 0.019766 4456000000.0 5298700.0 5678100.0 4643100.0 4701100.0 4526100.0 5471100.0 4061000.0 4367300.0 6553200.0 5354200.0 False True 5270172.3879409125 5867092.126016068 5296808.121451326 5296258.777985357 5102472.006703514 5092895.734584094 3864553.915473477 4693210.102700048 4938251.668381126 5012490.372038762 1.0514079822157028 1.170494442990762 1.0567218544695023 1.0566122595525655 1.0179514827932035 1.0160410008952552 0.7709848056828531 0.9363030658134011 0.9851892576050094 1.0 22.25709612977447 2.868130544167063 1.5859842295882403 0.9174655031971684 1.0918530240909954 0.4868023470279761 0.0698448025503875 0.2913356191108941 1.4780150201103373 0.026734070352607175 0.02865924504875623 738.1260694024398 -2.868130544167063 0.17438752089382703 KVGDDIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVGDDIAK 8 1 P30050 P30050 RPL12 60S ribosomal protein L12 0 ; 84.17 0.028287 2648300000.0 4107300.0 3719400.0 3357600.0 3168400.0 3278500.0 4391400.0 4321200.0 3960500.0 6489200.0 4484900.0 False True 4085186.7531639314 3843197.980575218 3830320.8952176254 3569519.11513663 3695997.541808066 4087832.8542436827 4112167.04741295 4256052.621011502 4890023.610825059 4198669.842283928 0.9729716568859185 0.9153370293303782 0.9122700853120822 0.8501547511997127 0.8802782025360618 0.9736018805470178 0.9793975715833081 1.0136668947269167 1.1646601887051589 1.0 22.00150091724311 1.9442249824225795 1.371804006554511 1.0740156773313954 0.907653069069966 0.6170085698048375 0.05155590715652682 0.2742157531471473 0.9581385304766016 0.037253697984647845 0.016791880469105038 87.94780046566217 -1.9442249824225795 -0.16636260826142935 KVGIVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVGIVGK 7 1 Q6P4E4;E9PEL3;P61513;G5E9R3 Q6P4E4 RPL37A 60S ribosomal protein L37a 0 ; 102.71 0.033418 0.0 1672550.0 1596220.0 1591020.0 1455230.0 1287560.0 1532770.0 1631930.0 1578900.0 2000190.0 1671860.0 False True 1663545.1766377725 1649349.2177646344 1815021.7866062508 1639461.9687919086 1451523.1340339745 1426813.2176524752 1552987.3113219982 1696725.535491747 1507269.9756728387 1565160.4634486423 1.062859186317773 1.0537892160465723 1.1596394293062253 1.0474721327802723 0.9273957322150334 0.9116082669943403 0.9922224254886799 1.0840585199508663 0.9630130653516197 1.0 20.577879142107804 3.471429661931683 23.717853807888716 0.9883270625909956 1.09081369389174 0.4922254743109703 0.051424109748170875 78.57760405790836 327443.21735399513 0.016125678027282164 0.021911416568715 2960.9403744685837 -3.471429661931683 0.10248663130074454 KVGTLWR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVGTLWR 7 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C0V6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 102.51 0.013763 534050000.0 474210.0 562330.0 571200.0 474430.0 407300.0 462630.0 528860.0 432460.0 733500.0 523330.0 False True 471656.9060496845 581046.8141143373 651619.9950405977 534492.7893555965 459167.24074376206 430649.4770138803 503277.0213586077 464732.3611873835 552738.7533964405 489930.63135464565 0.9627014027385168 1.1859777220047616 1.3300250144370136 1.090956056121124 0.937208680898715 0.8790009226880662 1.0272413871471142 0.9485676776371593 1.128197989719753 1.0 18.90221796879679 3.4395835423992414 5.892404093742108 0.9812105481736902 1.1700153479634727 0.36445127325139015 0.10320018496580835 0.17570371161452822 16.190284892613366 0.028786408009698734 0.03975436851044625 2751.588859301238 -3.4395835423992414 0.18880479978978248 KVGWIFTDLVSEDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVGWIFTDLVSEDTR 15 1 Q8TAT6;Q8TAT6-2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 133.45 6.610100000000001e-05 159400000.0 208560.0 230500.0 240180.0 250030.0 253950.0 244280.0 280190.0 237260.0 290960.0 266170.0 False True 207437.13613319452 238172.0531598077 273995.25631801604 281683.7723638467 286289.0272204229 227393.49857326708 266636.1392702569 254965.54598186797 219256.80666425143 249182.80272039826 0.8324697124703044 0.9558125623422518 1.0995753050641268 1.1304302274820985 1.1489116588100208 0.9125569505228641 1.0700422997065435 1.0232068312834508 0.8799034454647898 1.0 17.926844979050248 4.573853290555008 3.3337731487455184 1.0381469846811562 0.8334255885988013 0.3538243362369129 0.082899911699357 0.2872101192891154 5.412016753576839 0.020693519359380554 0.11620581796633199 37484.63536405808 -4.573853290555008 -0.20472139608235485 KVGYTPDWIFLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVGYTPDWIFLLR 13 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 76.548 0.045487 790850000.0 111680.0 164870.0 159770.0 162010.0 135170.0 146530.0 152590.0 114250.0 216270.0 149420.0 False True 111078.72728881447 170357.5982839803 182264.22725426525 182520.44938874026 152383.09828464116 136400.72599451814 145208.63874959305 122775.91514974466 162973.15636952722 139883.88767510187 0.7940780681389764 1.217850040596938 1.3029679849733453 1.3047996622217652 1.0893541837968523 0.975099621990248 1.0380655067784403 0.8776987628118211 1.1650602444511202 1.0 17.09387027175072 2.9919186523422763 7.588025195800158 0.9988331927421663 1.1734746468474824 0.1637700997323729 0.14978445409894708 0.20722687505699755 83.72720723000695 0.045120694641602746 0.05096861124156416 981.5640691282391 -2.9919186523422763 0.17464145410531606 KVIDDTNITR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVIDDTNITR 10 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ; 130.56 0.00043825 292000000.0 226250.0 256320.0 277990.0 289640.0 230650.0 225600.0 241410.0 234140.0 197642.0 253530.0 False True 225031.89513873807 264851.4562512883 317128.57566760463 326308.3943025417 260021.91033034291 210004.803005277 229732.0760242432 251612.71573882902 148935.77736711584 237349.49834204646 0.9481035212235529 1.1158711440359084 1.3361249039194842 1.3748012807353642 1.0955233196053487 0.8847914340338618 0.9679063053808282 1.0600937330662807 0.6274956484318461 1.0 17.856653474951127 2.9310036573965736 4.721173029827054 0.9312351763298696 1.20260886177227 0.4320331991630256 0.15417431067738066 0.22721989174146395 9.716289031336443 0.04925133033795948 0.05339110431738251 853.1072984021534 -2.9310036573965736 0.2713736854424005 KVIS(ph)PPPFAPSPTLPPTFHPEEFLDEDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVISPPPFAPSPTLPPTFHPEEFLDEDLK 29 1 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 KVIS(1)PPPFAPSPTLPPTFHPEEFLDEDLK;KVIS(1)PPPFAPSPTLPPTFHPEEFLDEDLK 141.46 3.7948e-08 555150000.0 316290.0 246600.0 259970.0 207804.0 227100.0 339530.0 345320.0 334550.0 594740.0 352400.0 True False 314587.1297831225 254807.9319271522 296571.51630025246 234111.96509337614 256019.83887284138 316059.09026764985 328615.5523494958 359515.8198104782 448174.2961077012 329909.5302951809 0.9535557505769872 0.7723569904123933 0.8989480117015721 0.7096247413159252 0.7760304427816075 0.9580174600741646 0.9960777794308417 1.0897406312839995 1.3584763547349024 1.0 18.33171092894166 2.0665010049884516 1.4573617867686384 1.170755693831327 0.8217891228764074 0.626954376585976 0.1081041763455977 0.24980114434557274 0.9983423374219168 0.0681914047217943 0.034359536313542875 116.54697478143194 -2.0665010049884516 -0.3489665709549197 KVLS(ph)PTAAKPSPFEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVLSPTAAKPSPFEGK 16 2 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 KVLS(0.899)PT(0.101)AAKPSPFEGK;KVLS(0.947)PT(0.053)AAKPSPFEGK 190.83 4.1377e-10 3385500000.0 5200700.0 3827370.0 3645220.0 3614080.0 3175410.0 4510300.0 4375200.0 4091100.0 6909500.0 3974400.0 True False 5172700.009052096 3954761.696755981 4158435.291179775 4071622.1574400244 3579779.6413703645 4198513.577104171 4163554.861112919 4396398.656184869 5206746.307556518 3720750.389344969 1.390230321245156 1.0628935786934661 1.117633502932149 1.0943013455296113 0.9621122802598371 1.1284050628946682 1.1190094538553297 1.1815892484415884 1.3993807062325285 1.0 21.82716217824173 -0.4733198005119441 7.516043538405257 0.999997424914815 1.1490138770125626 0.1152282569138201 0.13022371797457175 0.0 0.0 0.1230725390924992 0.029008475656717554 0.3362638642729077 0.4733198005119441 0.1490164520977476 KVLVTVEEDDTIMEELVDNHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVLVTVEEDDTIMEELVDNHGK 22 1 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ; 244.81 4.9786e-31 126003000.0 106354.0 106309.0 84630.0 88071.0 91522.0 108612.0 99956.0 95613.0 145077.0 104554.0 False True 105781.40188104012 109847.4307998524 96545.1683828531 99220.779569877 103176.78420660595 101103.90808514689 95120.74641099901 102748.12757297642 109324.71728220243 97881.27420681718 1.0807113284766854 1.1222517451882723 0.9863497299683597 1.0136850012825696 1.054101359455126 1.0329239060733975 0.9717971816551413 1.0497220066411872 1.1169114640989037 1.0 16.57874526192191 4.249142183079113 24.99486076400066 1.0286394319373848 1.1014815543799374 0.35187422647718036 0.03978595013231516 227.46401420871652 537284.449401446 0.009674171733474537 0.0259246174240312 17747.704254607877 -4.249142183079113 0.07284212244255261 KVMDDLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 KVMDDLDR 8 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;; 163.16 0.00054119 6701270000.0 7921380.0 8884840.0 8041230.0 8137390.0 7886040.0 8420520.0 8469430.0 7913780.0 11191320.0 9158470.0 False True 7878732.170228047 9180566.528400801 9173365.288375871 9167582.739654612 8890280.44977888 7838429.272171969 8059731.314535469 8504346.44896058 8433369.14200499 8573968.603639338 0.9189131118212647 1.0707487923974883 1.0699088966201848 1.0692344657949069 1.036892116213871 0.9142125000136856 0.9400234228889531 0.9918798215975265 0.9836015889334293 1.0 23.03153170359397 2.8210035674171188 9.969170650776011 0.9655243750291642 1.0394154019489985 0.32709210964362134 0.047769635244732406 0.5707001870352879 66.37046545224143 0.014668135116778868 0.015562950809209615 662.2219433568642 -2.8210035674171188 0.07389102691983429 KVMDS(ph)DEDDDY ddPTM_BT-474_Trastuzumab_2h_R1 9 KVMDSDEDDDY 11 1 O14737;K7EQA1 O14737 PDCD5 Programmed cell death protein 5 1 KVMDS(1)DEDDDY;KVMDS(0.781)DEDDDY(0.219);KVMDS(0.953)DEDDDY(0.047);KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY 141.37 4.042e-05 35281810000.0 34396750.0 30884040.0 24222300.0 25515500.0 26570610.0 34635880.0 35456300.0 31779590.0 45890440.0 34373610.0 True False 34211561.71983822 31911996.6016036 27632589.29599413 28745759.68383683 29954219.687155932 32241583.139691558 33741143.31278069 34151144.37928817 34581355.96239149 32179856.781071894 1.063135922343861 0.9916761537725101 0.8586921155052357 0.893284264109746 0.9308375699414214 1.0019181675990545 1.048517510265215 1.0612584329267674 1.0746274042690007 1.0 24.939654569461922 2.4818258308729186 2.8916690969816727 1.0522335542488044 0.9423651639676026 0.4152976599387245 0.05476582729626985 0.25796928526877655 4.403837640170693 0.02171868722539257 0.018648422014989893 303.2674718734126 -2.4818258308729186 -0.10986839028120177 KVNAEGSVDSVFSQVCTHLDALK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVNAEGSVDSVFSQVCTHLDALK 23 1 P00568;Q5T9B7 P00568 AK1 Adenylate kinase isoenzyme 1 0 257.2 8.629099999999999e-44 755880000.0 784000.0 817690.0 778360.0 720360.0 709650.0 1082300.0 1018000.0 1008100.0 1421000.0 1114800.0 False True 779779.0311105892 844906.317345956 887946.3223735987 811557.5021398256 800019.7210749099 1007483.1484601563 968755.4508623482 1083329.5410280752 1070813.5904244625 1043652.5095717027 0.7471634705603278 0.8095666992576784 0.8508064841792953 0.7776127539547383 0.7665575598560334 0.9653434828356905 0.9282356358822047 1.0380174733376104 1.026025023275138 1.0 19.993210007125057 KVNELR ddPTM_BT-474_Trastuzumab_2h_R1 7 KVNELR 6 1 P50502;Q3KNR6;Q8IZP2;F8WAQ7 P50502 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 0 ;;;;;; 125.86 0.028448 7104850000.0 15111300.0 16250560.0 14772000.0 14378800.0 14506930.0 15427820.0 16947750.0 15432400.0 19912480.0 16965390.0 False True 15029942.43982326 16791450.065929048 16851769.199474245 16199154.605708437 16354301.546189312 14361331.116581896 16127922.585807852 16584044.052139357 15005316.117561761 15882644.285398856 0.9463123501192118 1.0572200550613395 1.0610178567662263 1.0199280620167608 1.0296963938948163 0.9042153723599083 1.0154431652564608 1.0441613974434538 0.944761832345283 1.0 23.92094778952898 KVNIDFEPFKPINTSLYLCDNK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVNIDFEPFKPINTSLYLCDNK 22 2 B7Z7P8;P62495-2;P62495;I3L492;D6RJE8 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 184.3 2.2242e-17 230270000.0 414470.0 371450.0 351500.0 302870.0 362210.0 462830.0 496750.0 480280.0 692060.0 492080.0 False True 412238.5395719459 383813.4887037336 400988.1447072304 341213.31094603933 408335.2965131309 430835.6514846299 472720.304730719 516120.93241242395 521511.08612889034 460675.0331091169 0.894857567578015 0.8331545256823639 0.870436025154094 0.7406811448911721 0.8863846902170002 0.9352268313238083 1.0261470033231626 1.1203579428411827 1.1320584981764437 1.0 18.813389885737497 2.3456629198536496 1.7154440739820809 1.0960904217145513 0.8385200555454653 0.8072856899903362 0.05216452630218424 0.13871796048111373 0.8280829077336965 0.024928437742555924 0.0172718335729369 221.64754219281858 -2.3456629198536496 -0.257570366169086 KVNNADDFPNLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVNNADDFPNLFR 13 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 210.14 5.1778e-08 439300000.0 534990.0 794480.0 743170.0 773650.0 752290.0 894870.0 912340.0 733380.0 1184600.0 1049700.0 False True 532109.6732829766 820923.7865266976 847801.8762505607 871594.0106758781 848089.6723278284 833009.7431973949 868206.6287227467 788108.5396281813 892671.2028267547 982707.2473066167 0.5414732360439709 0.8353696268921066 0.8627206918176274 0.8869314977219559 0.8630135522580653 0.8476682607973945 0.8834845078249999 0.8019769283153375 0.9083795863654909 1.0 19.906402169982254 4.747523830960436 3.4396588650091755 0.8691450244657754 0.49679884874910535 0.8074544962291766 0.04924797371821457 0.12349115253122406 2.462946070199473 0.01104017405231138 0.12171884974517226 55914.420854507174 -4.747523830960436 -0.37234617571667 KVNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_BT-474_Trastuzumab_2h_R1 2 KVNVTVDYIRPASPATETVPAFSER 25 2 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 KVNVTVDYIRPAS(0.992)PAT(0.008)ETVPAFSER;KVNVT(0.026)VDYIRPAS(0.948)PAT(0.026)ETVPAFSER 229.96 1.5144999999999996e-34 1469350000.0 494501.0 569332.0 547341.0 520584.0 571479.0 548284.0 542225.0 522692.0 726541.0 643384.0 True False 491838.6615602259 588281.8714515389 624401.8552267432 586489.8810233205 644253.4632285896 510382.41760170885 515995.5052493488 561697.9312161958 547494.7057006186 602322.682291245 0.8165700479504837 0.9766888891079203 1.03665671837479 0.9737137555442935 1.0696151451209497 0.8473571270140552 0.8566761976927281 0.9325531774421777 0.9089724192652684 1.0 19.200177063447263 2.7205278407599196 24.998802392617044 0.9029485605199825 0.978155178547194 0.1639301146530988 0.0731315498131228 1363.5379379952963 1890268.2995055926 0.023550463308572803 0.022240660323227943 525.4456981045827 -2.7205278407599196 0.07520661802721151 KVNVTVDYIRPASPATETVPAFSER ddPTM_BT-474_Trastuzumab_2h_R1 2 KVNVTVDYIRPASPATETVPAFSER 25 2 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 208.11 1.6542e-25 1585730000.0 272840.0 342520.0 340580.0 301010.0 342310.0 368170.0 326290.0 281140.0 416710.0 382410.0 False True 271371.0597553736 353920.5711422874 388530.7036255712 339117.83513674897 385901.14946967154 342719.27447895816 310506.10615115525 302120.09439999325 314017.40412792197 358004.26640232693 0.758010686527421 0.9885931659388376 1.0852683615477883 0.9472452340991007 1.0779233257404646 0.9573050006443459 0.8673251558466261 0.8439008211719724 0.8771331338689347 1.0 18.449617254889482 2.3239070464812017 5.086215519673418 0.879345947852068 0.9807682978481126 0.10967840707669074 0.0934215293188314 0.3325967148541671 14.670027841073022 0.032912461002988384 0.02707448968488233 210.81768814040015 -2.3239070464812017 0.1014223499960446 KVPELMEMFLPATK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVPELMEMFLPATK 14 1 O43747;O43747-2;H3BNR4;H3BR36;H3BUN9 O43747 AP1G1 AP-1 complex subunit gamma-1 0 99.003 0.0037738 190070000.0 643080.0 594030.0 588700.0 490750.0 499690.0 614600.0 691340.0 583620.0 810050.0 654650.0 False True 639617.7287329048 613801.9294512813 671583.8429278709 552878.8996822683 563322.5596053281 572114.1486127808 657897.2430247307 627172.6879623107 610424.0316138886 612869.6765259367 1.0436439478595023 1.0015211275105487 1.0958020418545695 0.9021149534045684 0.9191555418413465 0.9335004985983655 1.0734700511763506 1.023337769813398 0.9960095188166083 1.0 19.225220799545795 -3.1060721253331227 10.328921069452157 1.0000472860280534 0.9996386905115681 0.0 0.06129934008019332 0.0 0.0 0.0 0.01421743394354491 0.0007832995457133121 3.1060721253331227 -0.00040859551648531056 KVPGVTAIELDEDTGTFR ddPTM_BT-474_Trastuzumab_2h_R1 4 KVPGVTAIELDEDTGTFR 18 1 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ;;; 279.53 5.093699999999998e-39 2300760000.0 2201850.0 2400220.0 2200550.0 2109740.0 2139730.0 2562940.0 2485410.0 2292920.0 2955880.0 2604360.0 False True 2189995.4842485343 2480109.8717363696 2510368.312476518 2376832.867683484 2412211.9323266614 2385769.9903118145 2365181.2231117804 2464029.3336118427 2227442.9807627425 2438147.5150952265 0.8982210759150887 1.0172107538126152 1.0296211762964107 0.9748519533653617 0.9893625867147123 0.978517491472879 0.9700730609892584 1.0106153620141418 0.9135800713336845 1.0 21.217353985215897 4.750420125501451 24.251055599451277 0.9883970164050945 0.8982209922847111 0.4307586260985774 0.03061584040987982 1123.6726385449629 2297689.06890144 0.007038844452910191 0.11441742146574631 56288.55831788308 -4.750420125501451 -0.09017602412038339 KVPLDER ddPTM_BT-474_Trastuzumab_2h_R1 4 KVPLDER 7 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ;;; 101.99 0.013952 4849770000.0 7554500.0 8871000.0 8441000.0 7711900.0 6283590.0 8174100.0 9175800.0 7098300.0 10521000.0 8551400.0 False True 7513827.411383864 9166265.87236725 9629419.429512754 8688225.749281073 7083767.940744164 7609043.706761686 8731931.499040036 7628011.190437046 7928240.524177173 8005642.330778134 0.9385664636173588 1.1449756925970866 1.2028290837440887 1.0852627922032825 0.8848469177182982 0.9504601120522581 1.0907221604779473 0.9528293764899708 0.9903315932185247 1.0 22.932585730997744 3.410313941793135 10.115782839160687 0.9808998417785136 1.1076511265035855 0.332742660507128 0.07905620783094994 0.4311531788084091 62.33636247680302 0.02202542001874301 0.02983293086489711 2572.2545362870414 -3.410313941793135 0.1267512847250719 KVPS(ph)PEAFLGKPWSSWIDAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVPSPEAFLGKPWSSWIDAAK 21 2 Q9ULK2;C9IZF2;Q9ULK2-2 Q9ULK2 ATXN7L1 Ataxin-7-like protein 1 1 KVPS(1)PEAFLGKPWSSWIDAAK;KVPS(1)PEAFLGKPWSSWIDAAK 161.24 1.0522e-11 452540000.0 508670.0 405440.0 376190.0 398970.0 367680.0 524410.0 502050.0 522260.0 806710.0 535830.0 True False 505931.3772385497 418934.8253063442 429154.2820979031 449479.5610926838 414501.86858990055 488158.77102835686 477763.9234827528 561233.6931825441 607907.1298601803 501632.8706528574 1.0085690289396265 0.8351422919337709 0.8555146745853676 0.8960329104982735 0.8263052380328287 0.9731395201296029 0.952417497802646 1.1188136304786374 1.2118566494037974 1.0 18.9362723616001 1.938762581839808 1.882399635212802 1.127336350914977 0.8870424640727866 0.6254587332772967 0.07259598676479617 0.19471141009642842 1.2798094754403015 0.043008684541531665 0.02079013046970305 86.8485519717379 -1.938762581839808 -0.24029388684219033 KVPVPEGLDLDAWINEPLS(ph)DSESEDERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVPVPEGLDLDAWINEPLSDSESEDERPR 29 2 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3;O14617-4 O14617-5 AP3D1 AP-3 complex subunit delta-1 1 KVPVPEGLDLDAWINEPLS(0.766)DS(0.187)ES(0.046)EDERPR 146.6 2.9049e-08 47918000.0 29183.0 30929.0 34888.0 30783.0 30354.0 28763.0 32493.0 35839.0 44036.0 40835.0 True False 29025.8819705361 31958.453068024686 39799.927148067836 34680.124643747884 34219.40197774652 26774.681510819075 30921.189454685966 38513.4881667545 33183.91785216859 38228.875339397615 0.7592659138633574 0.8359768050798291 1.0410959463160334 0.9071709365200057 0.8951192436069643 0.7003784776065811 0.8088438171451894 1.0074449699299306 0.868032803935777 1.0 15.222375137500185 1.741132576896942 24.999999999989754 0.9542104536181854 0.85474199686433 0.22086832124279276 0.09320228183967903 0.7561303412650526 7395.221003340657 0.04604093169378987 0.025532024746921397 55.09758669105311 -1.741132576896942 -0.0994684567538554 KVPWFDQQNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVPWFDQQNGR 11 1 Q92522 Q92522 H1FX Histone H1x 0 ; 107.39 0.0035341 1517090000.0 1584520.0 1614550.0 1442370.0 1558720.0 1606410.0 1781270.0 1936000.0 1695540.0 2376000.0 1774690.0 False True 1575989.1203767224 1668289.320733916 1645443.1586952142 1756053.79218084 1810976.7915619616 1658134.9975585553 1842348.283761796 1822069.8045776633 1790466.6367688372 1661427.7648114508 0.9485751675490842 1.0041299152859913 0.9903789942272629 1.0569546442966347 1.0900123555883168 0.9980181098916032 1.1088946042567653 1.0966891508427652 1.0776674584898553 1.0 20.663992138542053 4.112261113132065 0.9016873797194435 1.0728244745448623 0.9418927991785149 0.4755615784942312 0.03801454289388563 0.7987111928301875 0.9251756075435089 0.013470938072816884 0.08579870915013642 12949.74191514932 -4.112261113132065 -0.13093167536634742 KVQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 KVQIPVSRPDPEPVS(1)DNEEDS(0.869)Y(0.131)DEEIHDPR 187.79 1.9574e-18 1122800000.0 427030.0 349720.0 366890.0 332880.0 360910.0 473120.0 475420.0 414540.0 534820.0 492940.0 True False 424730.91792749334 361360.2187897955 418544.92293495196 375022.5738690445 406869.7492188344 440414.3280046846 452422.11831923237 445475.0797914679 403020.7772208376 461480.147172834 0.9203666084652232 0.7830460768542195 0.9069619256626398 0.8126515867834085 0.8816625194202625 0.9543516242308473 0.9803717908363039 0.9653179720093747 0.8733220262883765 1.0 18.815909059054622 2.827273609815144 3.6874271909984055 0.9561198924995516 0.8536693228342087 0.4870856832189381 0.04851568705404511 0.19083932361984957 4.881893221165482 0.01445595320502006 0.0152809728284362 671.851993015342 -2.827273609815144 -0.10245056966534294 KVQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 KVQIPVS(0.001)RPDPEPVS(0.998)DNEEDS(0.342)Y(0.66)DEEIHDPR 61.608 0.056085 786220000.0 221250.0 187880.0 188550.0 208390.0 227640.0 259980.0 245560.0 217360.0 286240.0 260000.0 True False 220058.81458318597 194133.47222414144 215096.20109402068 234772.15263329208 256628.6046720107 242008.19452709227 233681.32466970384 233580.50693171582 215699.98741949192 243406.57740280096 0.9040791622447492 0.7975687193648838 0.8836909971338577 0.9645267401495884 1.054320747657239 0.9942549503360603 0.9600452344514778 0.9596310396541812 0.8861715641420042 1.0 17.893008627937064 3.8099440819566937 3.633569195197462 0.9752351019419031 0.8495639472193833 0.5568017874888802 0.046432039926547375 0.17071737508556756 4.407210433516471 0.012563786509273795 0.023779411977599526 6455.711024961941 -3.8099440819566937 -0.12567115472251977 KVQSGNINAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVQSGNINAAK 11 1 P49368;P49368-2;Q5SZX6;E9PRC8;Q5SZW8;E9PM09;Q5SZX9 P49368 CCT3 T-complex protein 1 subunit gamma 0 144.28 5.8986e-05 478080000.0 729160.0 649280.0 645300.0 647030.0 722650.0 806570.0 739990.0 753450.0 1013100.0 897850.0 False True 725234.2835772919 670890.8923019517 736152.6309518507 728943.9316585195 814675.1940178719 750813.7143615528 704193.8566636834 809676.2649415781 763435.0798444904 840548.4443119415 0.8628108094007076 0.7981585081049449 0.8758003609827064 0.8672241755860015 0.9692186090294307 0.8932426434697123 0.8377790256219252 0.9632713859869971 0.9082582747142257 1.0 19.680971444825705 7.999999999980174 0.060722424532487974 1.1500016576074208 0.3604527416872092 0.49932805919644996 0.042534820957607265 268.66019642796516 1.21702086664925 3.168760443273226 18.70423367428821 99999999.99543491 -7.999999999980174 -0.7895489159202116 KVQVAALQAS(ph)PPLDQDDR ddPTM_BT-474_Trastuzumab_2h_R1 5 KVQVAALQASPPLDQDDR 18 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR 198.39 1.0647e-15 8240810000.0 4103850.0 3729970.0 3597530.0 3610240.0 3590190.0 4198990.0 4080920.0 3666460.0 5005810.0 4046500.0 True False 4081755.3275806014 3854119.796635517 4104030.9537086855 4067296.0138337575 4047379.4157766965 3908723.7046592627 3883510.3089716895 3940069.8631066363 3772195.1999174305 3788248.905617052 1.0774781249268892 1.0173882162074392 1.0833583156648987 1.0736612390497748 1.0684037708756193 1.0318022395158817 1.0251465533886615 1.0400768168280787 0.9957622357718316 1.0 21.853099695035965 1.8128341934997168 0.7748092158981438 0.9992835188292234 1.0626660436499828 0.5794226963803861 0.020055307486570733 0.47942756047285495 0.5512684471383463 0.018106996648180364 0.008611820997655343 64.98815288801295 -1.8128341934997168 0.06338252482075946 KVS(ph)GDSSHTETTAEEVPEDPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVSGDSSHTETTAEEVPEDPLLK 23 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 KVS(0.834)GDS(0.055)S(0.055)HT(0.055)ETTAEEVPEDPLLK 163.76 9.2389e-12 90262000.0 111040.0 93651.0 87495.0 78232.0 80729.0 125740.0 120990.0 111480.0 156740.0 132440.0 True False 110442.17297770384 96768.11692177506 99813.53547982675 88136.16317869224 91009.35963172879 117047.88976012214 115137.2514733159 119799.2036839699 118113.52720839567 123987.56581241154 0.8907520060906643 0.7804663015014064 0.8050285915834562 0.7108467901695795 0.7340200530222722 0.9440292580403677 0.9286193395192077 0.9662194986973253 0.9526239702705103 1.0 16.919835920530886 2.7248966992890242 21.954049811340795 0.9546086371109568 0.7810935075215795 0.7688895890682996 0.047681521178350984 75.7235924611188 121665.65366979314 0.01582045561485585 0.01502077605837132 530.7581837760113 -2.7248966992890242 -0.17351512958937731 KVS(ph)IVSKPVLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVSIVSKPVLYR 12 2 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 KVS(0.999)IVS(0.001)KPVLYR;KVS(0.999)IVS(0.001)KPVLYR 118.47 0.00032461 619350000.0 1351750.0 585480.0 620190.0 591260.0 561830.0 745550.0 625060.0 657730.0 1318730.0 953560.0 True False 1344472.3281935449 604967.3478698663 707507.3612118835 666113.4553767467 633375.7202726933 694011.883335923 594823.4598389197 706813.1524852654 993746.6615766706 892702.9844162108 1.50606904162281 0.6776804361928831 0.7925450833734613 0.7461759028534627 0.7095033077400248 0.7774275379954921 0.6663173196714566 0.7917674353329184 1.113188461251239 1.0 19.767820723482586 4.744004916559056 24.98784995053775 0.7890694914429169 1.5060693464796542 0.7011647439156794 0.13614182635262415 301.400085824087 1383302.111840633 0.03096484925889353 0.2701533231408402 55463.1991797777 -4.744004916559056 0.7169998550367372 KVS(ph)SAEGAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KVSSAEGAAK 10 1 P05114;A6NL93;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 KVS(0.976)S(0.024)AEGAAK;KVS(0.5)S(0.5)AEGAAK;KVS(0.5)S(0.5)AEGAAK 158.89 4.808e-06 1654300000.0 3170470.0 2470440.0 2219970.0 2002010.0 1854630.0 2495660.0 2374920.0 2430300.0 3916700.0 2555540.0 True False 3153400.541792329 2552667.101987483 2532522.4796748525 2255464.260729292 2090806.1372467568 2323140.8983517294 2260036.0465245713 2611661.3268133444 2951481.7660911204 2392443.249292133 1.3180670190297492 1.066970805992057 1.0585507014321722 0.9427451461582758 0.8739208914842083 0.971032813020368 0.9446560737410437 1.0916293741078593 1.2336684546078132 1.0 21.190053272536684 4.8770367935455985 1.801185518165582 1.0084535307729507 1.505032386003789 0.48427611957017935 0.09364177382621514 1.2140685957151058 2.9848056433315215 0.026029896994397946 1.1451477699875279 75341.93909238819 -4.8770367935455985 0.49657885523083833 KVS(ph)SAEGAAKEEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVSSAEGAAKEEPK 14 2 P05114;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 KVS(0.5)S(0.5)AEGAAKEEPK;KVS(0.5)S(0.5)AEGAAKEEPK 154.55 3.1757e-06 1219870000.0 1209190.0 837500.0 761150.0 725160.0 646260.0 1145960.0 1012220.0 951150.0 2153800.0 1024920.0 True False 1202679.855393638 865375.681220558 868313.3039656004 816965.1816476695 728557.3803168752 1066742.482499678 963255.0515440935 1022129.6428418354 1623024.8494413823 959508.7281218426 1.2534329497427108 0.9018945381710679 0.9049561286068242 0.8514411153370225 0.7593025044628461 1.1117590192094826 1.003904418284536 1.0652635175529543 1.6915165040950868 1.0 19.871936404318465 1.4292595440163822 6.8667210526354525 1.3607570042783967 0.9656058197791632 0.34818230766751346 0.2023726333990393 0.18955479387941004 17.644891273681935 0.12237093595742747 0.04768290020927156 26.869497467024697 -1.4292595440163822 -0.3951511844992336 KVS(ph)VSESNVLLDEEVLTDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 KVS(0.903)VS(0.066)ES(0.031)NVLLDEEVLTDPK 183.91 2.5714000000000004e-17 225730000.0 333590.0 204180.0 185750.0 167850.0 171580.0 292480.0 272500.0 252750.0 462770.0 304410.0 True False 331793.98850533285 210976.00787058333 211901.98543205703 189099.79278995196 193429.69596566353 272261.5460238629 259318.13394890982 271611.48843849415 348726.5343003009 284982.29318148724 1.1642617679900351 0.7403126893088267 0.7435619352571846 0.6635492706542516 0.6787428573412466 0.955363026188005 0.9099447234209967 0.9530819806601877 1.2236779008519625 1.0 18.120512757458567 1.8522589387414692 1.28861324289376 1.0916287437020071 0.796409438984139 0.344716914899033 0.15042560286796863 0.4812820879693699 1.487223417431774 0.11787016659017462 0.049391801482321813 71.16376858490797 -1.8522589387414692 -0.29521930471786817 KVSGDS(ph)SHTETTAEEVPEDPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVSGDSSHTETTAEEVPEDPLLK 23 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 KVS(0.186)GDS(0.258)S(0.258)HT(0.258)ET(0.037)T(0.004)AEEVPEDPLLK 114.91 0.00038207 94820000.0 100110.0 79173.0 76073.0 69265.0 69335.0 112140.0 113670.0 92253.0 144190.0 110880.0 True False 99571.01888326653 81808.22544391076 86783.41716163058 78033.94189809955 78164.4012692579 104388.02574916567 108171.34783843135 99137.38731124203 108656.30654701118 103803.54347085604 0.9592256251947908 0.7881062891352962 0.8360352090099502 0.7517464172117441 0.7530032083269238 1.0056306582489039 1.0420776037265205 0.9550481996703313 1.0467494934555641 1.0 16.6634961672711 2.7272164757981403 24.832288498893174 1.0055141676216224 0.8133465654244895 0.7221866439713445 0.05956754116448797 358.62706405014075 785032.2488105206 0.01917028918774045 0.018225358650914156 533.600804636932 -2.7272164757981403 -0.19216760219713291 KVSHVADTK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVSHVADTK 9 1 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 0 ; 105.86 0.0019663 822810000.0 2357790.0 2297860.0 2133940.0 1972600.0 1984850.0 2210550.0 2548100.0 2242140.0 3009400.0 2474900.0 False True 2345095.9206150984 2374342.8810142996 2434380.203461013 2222330.9577447646 2237608.8823723462 2057739.8815749811 2424838.668312724 2409459.872156223 2267773.6938940017 2316949.763131509 1.01214793601979 1.0247709807075056 1.0506832052201205 0.9591623405511991 0.9657563223762226 0.8881245136682684 1.0465650601916359 1.0399275420195906 0.9787755133840094 1.0 21.1437953328766 -0.3295097645293166 6.769606947858097 0.9999999999973218 0.9987751125075631 0.0 0.04778014274576093 0.0 0.0 0.04909940068080303 0.011572839724530408 0.468263422979816 0.3295097645293166 -0.0012248874897586859 KVSQPIEGHAASFAQFK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVSQPIEGHAASFAQFK 17 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 225.13 1.6204e-15 1916790000.0 1865150.0 2233950.0 2452060.0 2772450.0 2490090.0 2847220.0 3072820.0 2573740.0 3751220.0 3335930.0 False True 1855108.239637647 2308305.6752987085 2797288.734312408 3123441.8857343006 2807188.201580243 2650398.3830349557 2924175.957287664 2765805.5479869084 2826782.094772727 3123028.091366637 0.5940094630483621 0.7391242114279523 0.895697589799237 1.0001324978051935 0.8988674195216149 0.8486629980568448 0.9363271388340425 0.885616608967674 0.9051414243077549 1.0 21.574514115657706 4.443583554712621 2.3494975835182696 0.9174152134079626 0.5921129129458655 0.8462846801080249 0.045547052703544824 0.12451755761362278 1.2031159100697482 0.011702572553945063 0.06377083165595947 27770.49076282799 -4.443583554712621 -0.32530230046209707 KVSS(ph)AEGAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVSSAEGAAK 10 1 P05114;A6NL93;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 KVS(0.312)S(0.688)AEGAAK 153.79 9.5705e-06 812530000.0 1766100.0 1318100.0 1270200.0 1139700.0 1055800.0 1339500.0 1243500.0 1389200.0 2318600.0 1543600.0 True False 1756591.5138321558 1361972.1616917248 1449033.1192236803 1283985.9031439272 1190249.8717831192 1246903.5178438346 1183347.1543686963 1492869.158214664 1747212.097648245 1445086.1264575534 1.215561814393872 0.9424851133478307 1.0027313200880301 0.8885186008196321 0.823653241139936 0.8628575799149505 0.8188765587761352 1.0330658712185168 1.209071255795193 1.0 20.462724048562503 -0.5719604398748825 6.66762330155137 1.0000021711961131 0.9644913731516066 0.0 0.136618102723861 0.0 0.0 0.13370200411036937 0.03151386458822462 0.26794123828625194 0.5719604398748825 -0.03551079804450652 KVSVS(ph)ESNVLLDEEVLTDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 KVS(0.305)VS(0.348)ES(0.348)NVLLDEEVLTDPK 88.836 0.0013257999999999998 58059000.0 130300.0 81471.0 71293.0 67636.0 73547.0 108660.0 100900.0 96302.0 153500.0 95032.0 True False 129598.47927769083 84182.71298474049 81330.4347101353 76198.71066512469 82912.77450277802 101148.5899581268 96019.08152456889 103488.54425164752 115671.98179461992 88966.97639901153 1.456703200707299 0.9462242777273456 0.9141643113212391 0.8564830878749667 0.9319500095284706 1.1369228679244023 1.0792665482294137 1.1632242483717512 1.300167618104026 1.0 16.44098230184679 2.7113180369036196 19.099067751830706 1.1425396823058338 1.0018583792164546 0.0952577580675501 0.17126511424936425 83.35430725840075 58435.56767650119 0.055730714958271206 0.052594780020882186 514.4202272315706 -2.7113180369036196 -0.1406813030893792 KVSVSES(ph)NVLLDEEVLTDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 KVS(0.185)VS(0.337)ES(0.478)NVLLDEEVLTDPK 153.17 3.428e-08 245100000.0 401600.0 254830.0 261350.0 233770.0 228370.0 361060.0 363780.0 309030.0 506200.0 353190.0 True False 399437.83022195473 263311.86250201217 298145.808305077 263365.25803102186 257451.5658449616 336100.7720438183 346182.57162544725 332091.3878225442 381453.79273248604 330649.11181882775 1.208041443162316 0.7963483133331034 0.901698500458818 0.7965098003206714 0.7786247010577992 1.016487751002875 1.0469786829947112 1.0043619533582981 1.153651345482808 1.0 18.334941500686007 2.5702614096792575 7.1524040495902375 1.044654606695467 0.8857074303656459 0.272173883735511 0.12128269792146522 0.34075035648877194 22.733856605349985 0.038488996684003664 0.03617283534015703 371.75893016867786 -2.5702614096792575 -0.15894717632982103 KVT(ph)SPLQS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVTSPLQSPTK 11 1 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9;H0YDE2;Q6IQ23-3;A0A1B0GUN0;A0A1B0GUM1 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 2 KVT(0.577)S(0.423)PLQS(1)PTK 119.54 0.00049502 494800000.0 924730.0 643190.0 515370.0 525440.0 506930.0 859480.0 850780.0 736110.0 1300700.0 842120.0 True False 919751.3564271625 664598.1903334347 587929.6163236569 591960.650125423 571484.5306904865 800066.1705982956 809624.5211047838 791042.2660908415 980159.9134870488 788375.1806247944 1.1666416942479738 0.8429973528678752 0.745748510065623 0.7508616007625821 0.7248890436119259 1.014829221239862 1.0269533351660678 1.0033830155129102 1.2432658175645044 1.0 19.588522833069415 2.5883355100151975 5.672948868693173 1.0557422911485115 0.8357682732337041 0.38603794834173843 0.13386540291267432 0.2518915438665315 11.033148279462127 0.04501643818355577 0.04219399423340463 387.5569326729095 -2.5883355100151975 -0.21997401791480742 KVTAEADSSS(ph)PTGILATSESK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVTAEADSSSPTGILATSESK 21 1 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-7 A0MZ66 KIAA1598 Shootin-1 1 KVT(0.001)AEADS(0.006)S(0.024)S(0.959)PT(0.01)GILATSESK 111.55 0.00015061 509500000.0 537620.0 912570.0 798190.0 890300.0 980830.0 813540.0 846340.0 647620.0 571740.0 761120.0 True False 534725.5136551973 942944.3407897861 910568.2140081477 1003011.8887154835 1105732.8866651217 757301.8946671693 805399.3008672309 695948.6929477266 430842.3379234912 712544.6699723842 0.7504449000733125 1.323347686856364 1.2779103575968622 1.4076477321125098 1.5518085156794115 1.0628132194105384 1.1303141189708785 0.9767088608980812 0.6046530920513224 1.0 19.44262093509634 1.7814842986821775 1.663626213182801 0.8089481104485926 1.2590285904690952 0.3639334734286904 0.22197363922872548 0.3647342914648262 1.9567238067352886 0.16209460807756867 0.0666157534371722 60.462249165758486 -1.7814842986821775 0.4500804800205026 KVTEELLTDNR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVTEELLTDNR 11 1 Q9UHB9;Q9UHB9-2 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 ;; 165.73 3.4086e-05 954170000.0 1975100.0 2329080.0 2206900.0 2178650.0 2187870.0 2323390.0 2268010.0 1962970.0 2965150.0 2339490.0 False True 1964466.281054241 2406602.0198414084 2517612.3372813286 2454466.8666179855 2466482.2759785284 2162779.51797177 2158297.691660428 2109456.7891596914 2234428.5134743806 2190181.7452618424 0.8969421306264168 1.0988138427542653 1.1494992791022194 1.1206681235143556 1.1261541565280708 0.9874886057518498 0.9854422795412339 0.9631423482198277 1.0202023271850658 1.0 21.062619161574652 2.722234422477209 23.585891618097243 0.9863803124473176 1.0858452101589056 0.2942137210124698 0.06679325077620286 455.06108539604276 657409.2782537625 0.02197800145524081 0.02078826339759267 527.5145251662343 -2.722234422477209 0.09946489771158795 KVTGTEGSSSTLVDYTSTSS(ph)TGGSPVRK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVTGTEGSSSTLVDYTSTSSTGGSPVRK 28 2 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 KVTGTEGSSSTLVDYTS(0.002)T(0.036)S(0.102)S(0.287)T(0.287)GGS(0.287)PVRK 119.11 7.265e-05 195860000.0 141380.0 145230.0 126730.0 119500.0 130280.0 148440.0 148090.0 157850.0 206150.0 151500.0 True False 140618.82578879478 150063.89275661123 144572.48244309315 134628.68774738905 146870.38576994184 138178.69219017457 140926.32094126247 169629.5685460589 155347.09476847496 141831.1402943245 0.9914524095130735 1.0580461557680656 1.0193282105966284 0.9492181157678836 1.0355298946702398 0.9742479113079789 0.9936204464605984 1.1959966492129148 1.095296099616082 1.0 17.11381479838156 1.7635089055772197 24.999999999997247 1.1164666296878245 1.0038729896424443 0.37847897868739344 0.05351414450518157 12.005858075969401 12039.01940235772 0.023417793629957922 0.012987411319252497 58.01080680093897 -1.7635089055772197 -0.1125936400453802 KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVTGTEGSSSTLVDYTSTSSTGGSPVR 27 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 KVTGTEGSSSTLVDYTSTSS(0.003)T(0.022)GGS(0.974)PVR;KVTGTEGSSSTLVDYTSTSST(0.006)GGS(0.994)PVR;KVTGTEGSSSTLVDYTSTSSTGGS(1)PVR 225.45 1.018e-34 2899490000.0 1313010.0 1469220.0 1408950.0 1292990.0 1455500.0 1609980.0 1495860.0 1449160.0 1827990.0 1543310.0 True False 1305940.9000491265 1518122.0995377537 1607317.913187062 1456682.4014267495 1640849.2975756081 1498685.8720852684 1423499.5370598764 1557303.6778853761 1377506.3583110578 1444814.6345058323 0.9038812792035398 1.0507383184535604 1.11247344455146 1.008214041190811 1.1356815320027716 1.0372859163333858 0.9852471750099304 1.0778570763979134 0.9534139019724175 1.0 20.46245298036609 1.2323810414792025 24.997929001441612 0.9767069398865349 1.0429120624365729 0.1325326945524704 0.0630102446863687 295.0643230777445 1193552.6842759203 0.05293047493961666 0.014557072579177375 17.0757992916305 -1.2323810414792025 0.06620512255003796 KVTHAVVTVPAYFNDAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVTHAVVTVPAYFNDAQR 18 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 188.6 2.4033000000000002e-14 1825060000.0 1414520.0 2115600.0 1836590.0 1660550.0 1950230.0 2040860.0 1815510.0 1728480.0 2922400.0 1889040.0 False True 1406904.381487946 2186016.4670927944 2095165.908073548 1870775.4597399738 2198580.2305811625 1899780.1518676877 1727686.8453782962 1857467.9546435964 2202213.6781537263 1768479.8499114893 0.7955444793777889 1.2360991657338942 1.1847270457610297 1.0578438085305888 1.2432034386431936 1.0742447260356232 0.9769332941309822 1.0503189814328735 1.2452579984238694 1.0 20.754078350365617 -0.8568990566370944 8.061834413554477 0.9999897415324708 1.0966620664914588 0.04406753962369636 0.13413318981526784 0.0 0.0 0.12260930616761295 0.028899290609232242 0.13902757364006205 0.8568990566370944 0.09667232495898803 KVTLGDTLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVTLGDTLTR 10 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ; 182.08 2.9134e-06 1662850000.0 2326000.0 2655600.0 2221700.0 2194000.0 2062900.0 2384500.0 2440700.0 2058300.0 3109600.0 2425800.0 False True 2313477.0744428937 2743990.040655903 2534496.048637417 2471760.1750441124 2325598.0872337488 2219665.1275092345 2322634.0166205675 2211900.7978356224 2343280.7465052092 2270983.367168136 1.0187115889482479 1.2082827555349274 1.1160346153472165 1.0884096338082565 1.0240489300164783 0.9774026351752219 1.0227437374483455 0.9739837067119571 1.0318352747018251 1.0 21.1148857090141 3.285421600379555 2.36483758588845 0.9990317795113933 1.122450001406139 0.5536193296956962 0.04581104743312679 0.1896470469760307 2.1698092972804615 0.013091893765310433 0.0182339577757398 1929.3970065346539 -3.285421600379555 0.1234182218947456 KVTS(ph)PLQS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVTSPLQSPTK 11 1 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9;H0YDE2;Q6IQ23-3;A0A1B0GUN0;A0A1B0GUM1 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 2 KVT(0.07)S(0.93)PLQS(1)PTK 135.47 0.00041802 814110000.0 1133700.0 821170.0 645690.0 687780.0 656340.0 1110400.0 1047000.0 942820.0 1589900.0 1076900.0 True False 1127596.2851659108 848502.1470422524 736597.5395619104 774852.877480327 739921.0085680353 1033640.6616004424 996352.6100715916 1013178.015942952 1198090.44856851 1008171.3200195243 1.1184570149685211 0.8416249601563951 0.7306273496727178 0.7685726246064223 0.7339238816610117 1.025262910256587 0.9882770817684996 1.0049661161987138 1.18837981678085 1.0 19.94330938826224 2.7149714722619214 20.533531930381844 1.0341941510775952 0.8289135610948127 0.43170027620982965 0.11589052040169814 81.85721852850837 71252.8336543391 0.03854172838824948 0.03638647858731451 518.7659613475988 -2.7149714722619214 -0.20528058998278242 KVTSVVFHPSQDLVFSASPDATIR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVTSVVFHPSQDLVFSASPDATIR 24 1 Q9UMS4 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 0 ; 221.39 6.0393999999999986e-33 894310000.0 613250.0 1052530.0 1100540.0 1177350.0 1212010.0 1165220.0 1221700.0 1075020.0 1206510.0 1204350.0 False True 609948.3301384798 1087562.8247821778 1255486.4659348372 1326402.3892835851 1366352.2893539092 1084671.0840328424 1162601.7036527824 1155243.4512409496 909181.7769057121 1127487.3519040893 0.5409801973462542 0.9645898226224113 1.1135259866237828 1.1764232982689962 1.211855979622678 0.9620250570448181 1.0311438985895427 1.0246176591604208 0.8063786927368143 1.0 20.104679818815832 4.723932046511394 3.3701421389556296 1.047772602946063 0.48264977780953905 0.6546335853910366 0.10812632093774188 0.18070908518226064 3.475980620014017 0.027388615242326823 0.258396009374753 52958.057462990604 -4.723932046511394 -0.5651228251365239 KVVAEVYDQER ddPTM_BT-474_Trastuzumab_2h_R1 4 KVVAEVYDQER 11 1 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-2;Q9UHX1;A0A0J9YYL3;A0A0J9YXJ8;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5 A0A0J9YVP6 PUF60 Poly(U)-binding-splicing factor PUF60 0 ;;; 161.48 4.2101e-05 3453420000.0 2560300.0 2547220.0 2483750.0 2351290.0 2127530.0 2600710.0 2573930.0 2487960.0 3049990.0 2572870.0 False True 2546515.6292760735 2632002.677872997 2833440.410857986 2648963.072916805 2398458.3346417276 2420929.0391128305 2449419.1725325407 2673624.208804892 2298360.8322721347 2408667.233855172 1.0572301534572168 1.092721585148301 1.176351955567954 1.0997629874663215 0.9957615983353978 1.00509070123316 1.016918874514743 1.1100014859776397 0.9542043832237933 1.0 21.199803663096574 3.3207794062883615 6.543701368246763 1.0252115312454932 1.1117267325419056 0.4770560819294962 0.04666527876021369 0.2136882940617232 13.78735563343645 0.013686118626763869 0.018530861992957014 2093.0490512755223 -3.3207794062883615 0.08651520129641233 KVVDYSQFQES(ph)DDADEDYGR ddPTM_BT-474_Trastuzumab_2h_R1 69 KVVDYSQFQESDDADEDYGR 20 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)S(0.002)QFQES(0.996)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.998)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)S(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(0.999)DDADEDY(0.001)GR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR 315.06 1.2869999999999994e-66 503418722500.0 52759423.3 54754428.9 47429189.8 52672728.7 53257462.6 61678201.4 59298427.4 56772800.0 74831057.6 62370591.3 True False 52475372.42707583 56576896.96618524 54106807.461932 59341090.752763435 60039484.78039796 57414532.51208687 56429935.92467121 61009474.622436956 56389946.13927913 58390046.765084274 0.8987040657493486 0.9689476220802884 0.9266443590911193 1.0162877757489288 1.0282486161031816 0.9832931414334688 0.9664307369319465 1.0448608624667008 0.9657458636083649 1.0 25.799219130809103 3.7407918049735094 24.956617061842334 1.0033823472048102 0.935183572854483 0.5476141953709096 0.02871580747998766 144.12768880710672 1612108.7660928762 0.0073065906701976265 0.012418190581243337 5505.437097669048 -3.7407918049735094 -0.06819877435032728 KVVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_BT-474_Trastuzumab_2h_R1 8 KVVDYSQFQESDDADEDYGRDSGPPTK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYS(0.001)QFQES(0.999)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDY(0.001)S(0.002)QFQES(0.996)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK 252.73 4.533899999999998e-53 10571126000.0 1432997.0 1833601.0 1610547.0 1845066.0 1811030.0 2019601.0 2300813.0 1861825.0 3644618.0 2477494.0 True False 1425281.9033729334 1894631.3008497881 1837298.0184745255 2078651.1664211222 2041653.9356842025 1879990.7364993815 2189513.885230801 2000763.8356557863 2746450.72927911 2319378.2118306723 0.6145103442391857 0.8168703539533408 0.7921511071815909 0.8962105256565527 0.880259168284907 0.8105580741036259 0.9440089908849449 0.8626294001772977 1.1841323313593395 1.0 21.14530666306491 6.397254053129311 0.2115997436606321 1.0423644804271244 4.816388570355868e-18 0.6091213961248949 0.08809987867031012 18.98545331729674 0.42443877912284445 0.1499271545095401 5.828353504599852 2496054.4392518154 -6.397254053129311 -1.0423644804271244 KVVDYSQFQESDDADEDYGR ddPTM_BT-474_Trastuzumab_2h_R1 3 KVVDYSQFQESDDADEDYGR 20 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 ;; 281.36 1.4805999999999999e-44 2382280000.0 1039980.0 1160030.0 1040170.0 1102510.0 1049110.0 1215140.0 1242020.0 1111230.0 1268440.0 1151060.0 False True 1034380.8632326408 1198640.8972970578 1186616.8946802837 1242087.652957104 1182707.9399378542 1131140.231931881 1181938.747622844 1194155.6253116047 955849.9582251967 1077598.3653279543 0.9598946105656343 1.1123262022880533 1.1011680537573485 1.1526443366300851 1.0975405846851958 1.0496862915968066 1.0968267822707165 1.108163916848721 0.8870187529788013 1.0 20.03938813673012 1.2477231279960341 24.999999968107648 0.9435093670627146 1.0892376328816618 0.5155495380591868 0.05464146163920314 122.91896875063021 335391.7661271861 0.0359748729270612 0.01273442880427477 17.689808357057725 -1.2477231279960341 0.14572826581894716 KVVEAVNS(ph)DS(ph)DSEFGIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KVVEAVNSDSDSEFGIPK 18 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 KVVEAVNS(1)DS(0.826)DS(0.174)EFGIPK;KVVEAVNS(1)DS(0.973)DS(0.027)EFGIPK 153.87 1.0550999999999997e-07 4688200000.0 1095510.0 1356330.0 1200860.0 1102660.0 1156790.0 1704260.0 1695990.0 1672640.0 2565800.0 1685450.0 True False 1089611.8958826025 1401474.6241312013 1369930.6499377661 1242256.6429417245 1304100.3496684916 1586448.517596515 1613948.484389032 1797460.8902938217 1933492.9699585363 1577883.1380136576 0.6905529754594356 0.8881992527630843 0.8682079280359916 0.7872931860502409 0.8264872842929156 1.005428399211896 1.0228567918032103 1.139159705170931 1.2253714634358432 1.0 20.589558929015634 2.4478433900088077 1.45988164673354 1.1289083548331282 0.8124400724096942 0.7661117498787386 0.07520663220661965 0.18342581049976323 0.7908866821972947 0.03670477086253792 0.026841517848352967 280.442215899672 -2.4478433900088077 -0.31646828242343406 KVVGDVAYDEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 KVVGDVAYDEAK 12 1 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;; 160.27 0.00010244 1229320000.0 2912910.0 2506270.0 2300740.0 2086560.0 2103400.0 3101790.0 3056490.0 2721460.0 4306200.0 2992050.0 False True 2897227.216214725 2589689.681877789 2624664.1936094263 2350718.2820601827 2371255.5221714415 2887370.5581282773 2908635.9017743208 2924549.164493866 3244994.7101237252 2801094.807377117 1.0343195841084807 0.9245276793407492 0.9370136943230077 0.8392141086653696 0.8465459704992393 1.0308007249608044 1.0383925221359795 1.0440736089301985 1.15847371591191 1.0 21.417559383803372 2.59131097160917 5.468078693472894 1.0579237140114457 0.9140678972116979 0.5499852069863269 0.06277570452916269 0.18091885165379556 7.507332052039629 0.021280449727539393 0.019936875313133224 390.22130017518464 -2.59131097160917 -0.1438558167997478 KVVGSMPTAGSAGS(ph)VPENLNLFPEPGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVVGSMPTAGSAGSVPENLNLFPEPGSK 28 1 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 KVVGSMPTAGSAGS(1)VPENLNLFPEPGSK 302.41 7.166499999999997e-72 419600000.0 439940.0 389940.0 342700.0 350650.0 362270.0 472970.0 437560.0 426500.0 590790.0 493560.0 True False 437571.411921929 402918.91717629274 390949.18119820097 395042.2540470452 408402.9371574827 440274.6971516225 416393.5511584767 458327.5957231169 445197.7206804139 462060.5782420253 0.9470000959327264 0.8720045295992458 0.8460994068908071 0.8549577104154594 0.8838731464850548 0.9528505955360004 0.9011665802408523 0.9919210105888906 0.9635050935836844 1.0 18.817722482355425 2.0971814694475786 0.9631262241307734 0.9915553075261988 0.8769823762537866 0.6202210926544445 0.03313565056623394 0.35671049178080705 0.6150079866501815 0.026172757897224026 0.013338056876419464 125.07815586705853 -2.0971814694475786 -0.11457293127241219 KVVNPLFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVVNPLFEK 9 1 P62424;Q5T8U3 P62424 RPL7A 60S ribosomal protein L7a 0 152.54 0.0025537 0.0 1684900.0 1710700.0 2011400.0 1272600.0 808360.0 1332900.0 1781200.0 1215600.0 3015800.0 1610500.0 False True 1675828.685609988 1767639.6153600106 2294587.6365977908 1433711.029517383 911299.8544749023 1240759.7603091057 1695036.551155222 1306314.244691726 2272596.499649609 1507716.5111815801 1.111501182869358 1.1723952097431976 1.521895939707889 0.9509155195188519 0.6044238739288774 0.822939691319515 1.124240889175407 0.8664190084832212 1.5073102156774825 1.0 20.523933760291424 3.693348332912238 24.13160215531539 0.958019868235747 1.2589773055211717 0.22391952981672114 0.24108121498378227 397.4623656003197 212141.24036971977 0.06453411072964618 0.09997647998524058 4935.695206538448 -3.693348332912238 0.3009574372854247 KVVVS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 4 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 KVVVS(0.944)PT(0.056)K;KVVVS(0.737)PT(0.263)K;KVVVS(0.66)PT(0.34)K;KVVVS(0.784)PT(0.216)K 99.276 0.0053885 10571000000.0 9780500.0 7417000.0 6753600.0 6174800.0 5851700.0 8820300.0 9416100.0 8312900.0 13960100.0 9204500.0 True False 9727842.874715693 7663870.361328811 7704448.176656478 6956529.046883495 6596879.309256744 8210573.421752874 8960607.270004874 8933250.810050882 10519820.410756184 8617060.92963109 1.128904965875895 0.8893833319636182 0.8940923407148658 0.8072971867893378 0.7655602488050606 0.9528275927026991 1.0398681572730266 1.0366934715910532 1.22081304712401 1.0 23.03876445426784 2.2251321299217777 2.4283732698830183 1.082441128324378 0.8897014273498852 0.3937576305541508 0.10419660547281011 0.29994757160663943 3.607229454627952 0.047402453850444524 0.03258911085155215 167.93148558135738 -2.2251321299217777 -0.19273970097449278 KVVVSPT(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 2 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 KVVVS(0.216)PT(0.784)K;KVVVS(0.211)PT(0.789)K 119.6 0.0031982 5615440000.0 13760700.0 10204920.0 8874360.0 8180420.0 8329890.0 13461400.0 13233100.0 11758900.0 20620600.0 13718400.0 True False 13686613.920157483 10544584.593195586 10123792.75068009 9216060.333242636 9390652.116373826 12530845.102727132 12592964.397648888 12636408.828484338 15538929.431883635 12842879.967086852 1.0656966315369227 0.8210451721279625 0.7882805707617673 0.717600752857703 0.7311951945700468 0.9757036688687126 0.980540535294386 0.9839232992030099 1.2099256141695707 1.0 23.61446542183822 2.5606316341644213 4.327808081922769 1.0291094181448155 0.8170811335504469 0.4756319071647028 0.10880008080604671 0.21335085303632614 7.227290449406506 0.03779182002278201 0.03488278740260789 363.6064965620149 -2.5606316341644213 -0.21202828459436862 KVVVSPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 85.73100000000002 0.031570999999999995 0.0 245450.0 282840.0 268890.0 224890.0 193090.0 246820.0 251300.0 236380.0 456550.0 263060.0 False True 244128.52447205875 292254.15841960936 306747.37476622243 253361.0509415088 217678.86696590492 229757.9143517843 239143.65894077448 254019.8759133186 344039.36995657155 246271.2855830032 0.9912991841258642 1.1867163389663962 1.2455669528830895 1.028788436872459 0.8838986910333015 0.9329464204804615 0.971057825010515 1.0314636369886647 1.3969934381189424 1.0 17.909888898611545 3.6152668608464626 9.660208253538789 1.0221697419143434 1.1455790710550413 0.09834228359596231 0.14361791167574478 0.7603956223683211 56.306635194852994 0.03904806562943391 0.06051994420468778 4123.508183947575 -3.6152668608464626 0.12340932914069791 KVVVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KVVVVR 6 1 P40429;M0QYS1 P40429 RPL13A 60S ribosomal protein L13a 0 ; 136.58 0.021019 2918900000.0 4678800.0 5003700.0 4586000.0 4538800.0 4399800.0 4972500.0 4825000.0 4636000.0 5561700.0 4930200.0 False True 4653609.860663548 5170245.129699476 5231668.937773426 5113411.614626349 4960088.450342258 4628762.779005941 4591596.316710054 4981961.861131 4191093.5579618094 4615550.4150434155 1.00824591699748 1.1201795376014418 1.13348755128357 1.1078660516761467 1.0746472260764164 1.0028625760254861 0.9948101317980867 1.0793862948378472 0.9080376512196295 1.0 22.138071272168936 2.8441202695508068 3.6517135827896894 1.007962710820739 1.096840241731059 0.44892905536323835 0.050283832227631435 0.24596096795520883 6.013359036244077 0.01596712365057626 0.01698714963905229 698.4257929641071 -2.8441202695508068 0.08887753091032002 KVVVVVPNEEDWK ddPTM_BT-474_Trastuzumab_2h_R1 1 KVVVVVPNEEDWK 13 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 136.99 0.00010574 887640000.0 1136600.0 1044300.0 763720.0 866130.0 831900.0 1106000.0 1113900.0 982570.0 1367600.0 1158400.0 False True 1130480.67188813 1079058.8942073185 871245.1376267598 975781.9691936909 937837.5339423903 1029544.8232439568 1060016.401488773 1055894.362789363 1030573.3049011218 1084469.9202438646 1.0424269505178336 0.9950104415663928 0.8033834054436871 0.8997778093967483 0.8647888857364517 0.9493530470743191 0.9774511784065042 0.9736502074229261 0.9503014197658676 1.0 20.048558607104454 2.4864371562434826 17.181173016213954 0.9721172226456908 0.9164237524786769 0.14099945021853422 0.0624965761441437 15.2373335924068 28107.048375778595 0.022302225508165217 0.019725581643654712 306.50471255234055 -2.4864371562434826 -0.05569347016701387 KVYDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KVYDTR 6 1 O95159 O95159 ZFPL1 Zinc finger protein-like 1 0 86.086 0.086548 341000000.0 1661900.0 2015100.0 1761500.0 1628300.0 1620000.0 1611100.0 1607400.0 1627200.0 2333500.0 1780400.0 False True 1652952.5150544494 2082171.385346328 2009503.8887675295 1834442.6130466403 1826297.3975077209 1499728.4491214617 1529643.9211356982 1748629.9267541752 1758440.1922980163 1666773.3477228708 0.9917080311565437 1.249222870158663 1.2056251628410628 1.1005951202380562 1.0957083037131534 0.8997794758179785 0.9177276101909613 1.049110803903324 1.0549965864887267 1.0 20.668626505473515 3.0073831002887763 3.232117604825533 0.9869955480606363 1.1491543246842633 0.45300978085806554 0.07901078890665231 0.2222268230586295 4.83487976560654 0.02513901841745013 0.02913908187343644 1017.1455427050726 -3.0073831002887763 0.162158776623627 KVYEDSGIPLPAES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 KVYEDSGIPLPAESPK 16 1 F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3;Q8IXM2-2 F8W038;Q8IXM2-2 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 KVYEDSGIPLPAES(1)PK;KVYEDSGIPLPAES(1)PK;KVYEDSGIPLPAES(1)PK;KVYEDSGIPLPAES(1)PK 200.67 3.7017e-11 3176791000.0 5350310.0 3424280.0 3025400.0 2603644.0 2627162.0 5009320.0 4949470.0 4231840.0 7921520.0 5072600.0 True False 5321504.52543532 3538255.089779032 3451350.0227517877 2933265.0634423657 2961715.50829085 4663037.499070895 4710045.227288485 4547641.389648105 5969367.538929751 4748862.325128652 1.1205851341018092 0.745074261482865 0.7267740748113364 0.6176774272694672 0.6236684295139286 0.9819272869622658 0.9918260216484343 0.9576275491467116 1.2570100226622245 1.0 22.179150500771367 2.5953705333709958 5.604776543788035 1.030705203983873 0.7558350085657625 0.4453736130794337 0.15164116806001673 0.2278134462099981 9.611564624253887 0.050903898136451256 0.04773033743005706 393.88598960399855 -2.5953705333709958 -0.27487019541811064 KVYENYPTYDLTER ddPTM_BT-474_Trastuzumab_2h_R1 1 KVYENYPTYDLTER 14 1 H0Y993;A0A494C028;P35659;B4DFG0;P35659-2;A0A494C198 H0Y993 DEK Protein DEK 0 224.33 5.1122e-12 369520000.0 411660.0 541930.0 526780.0 532060.0 519390.0 532740.0 590600.0 500810.0 705360.0 569190.0 False True 409443.66829972516 559967.8124463966 600946.0451461578 599418.7414466591 585531.2378342809 495912.9377350678 562030.4216889037 538182.9852616509 531533.4793397597 532863.8068919239 0.7683833336099876 1.0508647898467045 1.1277666776644908 1.1249004599185208 1.098838446637152 0.9306560725668679 1.0547355898819666 1.0099822474353297 0.9975034379611486 1.0 19.023407320312415 4.739128870424801 24.983275584492468 1.0463224698709537 0.7683832479640051 0.6618318829028154 0.05906386172601509 29.537598184167287 1298310.234054143 0.014992419503780644 0.08915021582250508 54843.96820920806 -4.739128870424801 -0.27793922190694853 KWDEFEDILEER ddPTM_BT-474_Trastuzumab_2h_R1 3 KWDEFEDILEER 12 1 Q5TBH8;O15228;A0A2R8YH69 Q5TBH8 GNPAT Dihydroxyacetone phosphate acyltransferase 0 ;; 116.93 0.00034154 154306000.0 256477.0 318616.0 259669.0 256952.0 316939.0 325227.0 331171.0 308284.0 421833.0 300968.0 False True 255096.15632927345 329220.94095256046 296228.1381165907 289482.09685411764 357299.3030053701 302744.82299200917 315150.9935339247 331289.71751443273 317877.90942260466 281759.9645683317 0.9053669378475812 1.1684447130625566 1.05134928793175 1.0274067761813377 1.2680981968207152 1.0744777862810535 1.118508777557342 1.175787049881209 1.128186929997692 1.0 18.104107107297875 4.746713787315724 24.554563407249862 1.1198629825001845 0.9053668006227846 0.39986012322658293 0.07563181779983369 771.1658989281292 2322419.382200499 0.017230631640306006 0.19378347575076435 55810.22678997772 -4.746713787315724 -0.21449618187739983 KWDGS(ph)EEDEDNSK ddPTM_BT-474_Trastuzumab_2h_R1 8 KWDGSEEDEDNSK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(0.82)EEDEDNS(0.18)K;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK 258.9 3.6429e-24 11043580000.0 9932260.0 6445260.0 5567500.0 5342360.0 5643400.0 8879750.0 8745380.0 8487440.0 14634100.0 8586200.0 True False 9878785.81573783 6659786.582858051 6351355.606422489 6018702.228235487 6362053.538947565 8265913.783183103 8322332.55880409 9120815.871147053 11027722.141893469 8038221.36498435 1.2289765816566391 0.8285149513136127 0.7901444011096669 0.7487604477345972 0.7914752841544755 1.0283262189307967 1.0353450323049536 1.1346808525177772 1.371910730143837 1.0 22.938444877719544 2.177655949897663 1.5955288612402028 1.180759169582176 0.8676764466988992 0.38392062434255025 0.15516834707677107 0.3782451522302756 1.8745588711405554 0.08951023885889585 0.051222474794416196 150.54139977225267 -2.177655949897663 -0.31308272288327677 KWDGS(ph)EEDEDNSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWDGSEEDEDNSKK 14 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 KWDGS(1)EEDEDNSKK 105.9 0.0028769000000000004 0.0 99089.0 46788.0 53346.0 48232.0 56750.0 98474.0 104630.0 79085.0 172000.0 90526.0 True False 98555.5158338229 48345.31029605671 60856.65310825576 54338.166254661606 63976.77611639701 91666.7241628621 99568.64717458513 84986.72428549283 129612.9046819193 84748.55317679218 1.1629167949124548 0.5704558778154546 0.7180848619480733 0.6411692497134187 0.7549011011779329 1.0816317297079758 1.1748713510999658 1.0028103265456794 1.5293819165447762 1.0 16.370901118388588 2.6827748674554464 3.677862498490991 1.1550870918980003 0.7460696666091561 0.4835261670567741 0.20117668594944083 0.20023969785183976 5.519836987772742 0.06463239393059884 0.06209280136797382 481.6980269732746 -2.6827748674554464 -0.4090174252888442 KWDKDEYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWDKDEYEK 9 2 Q96NC0;R4GNG8 Q96NC0 ZMAT2 Zinc finger matrin-type protein 2 0 89.40299999999998 0.0068226 781920000.0 1505000.0 1118900.0 1031100.0 854980.0 887150.0 1506200.0 1442400.0 1327900.0 2393000.0 1509400.0 False True 1496897.24722122 1156141.9101106683 1176269.917518136 963220.3803369255 1000123.2939499848 1402079.9392134256 1372625.6014969079 1426994.640939571 1803277.214557169 1413068.799737645 1.059323684380505 0.8181780747868195 0.8324222555451838 0.6816514387096794 0.7077668788212371 0.9922234072918037 0.9713791725864686 1.0098550340963663 1.2761425451414476 1.0 20.430400278891252 2.0938335407028945 1.3880693720184043 1.1074928222463643 0.8203560654149412 0.4686030743405536 0.12333399062304831 0.3818609735612228 1.3887518685800324 0.08309606356613468 0.04244455541882895 124.11764899748289 -2.0938335407028945 -0.28713675683142303 KWDLSELPK ddPTM_BT-474_Trastuzumab_2h_R1 2 KWDLSELPK 9 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ; 115.57 0.0023313 1081990000.0 3315800.0 3132600.0 2730300.0 2251850.0 2251850.0 3142200.0 3108000.0 2989700.0 4991600.0 3478700.0 False True 3297948.10122001 3236866.6973033086 3114702.507806971 2536933.979112617 2538609.749739357 2924987.1099431836 2957654.166287017 3212806.595388986 3761487.0640131906 3256686.3877350884 1.0126698455338887 0.993914154428126 0.9564023479623833 0.7789924104042963 0.7795069734991803 0.898148228505788 0.9081789936623165 0.9865262456614317 1.1550043867224113 1.0 21.63497336715332 1.5339968712610168 3.373443701192483 1.0778589278381656 0.8999483865033681 0.4161874270702616 0.08172866804552563 0.20859602482681847 5.206846086821701 0.06037309791362043 0.023471860070516992 34.197697883847525 -1.5339968712610168 -0.17791054133479756 KWDSNVIETFDIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 KWDSNVIETFDIAR 14 1 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;H0YGA9;H0YFF3;F5GWK5;H0YH17 Q9Y365 STARD10 PCTP-like protein 0 ; 238.02 4.1551e-17 4050700000.0 2927100.0 3291600.0 3169800.0 2817500.0 2781000.0 3122100.0 3431800.0 3030000.0 3951900.0 3259200.0 False True 2911340.8188313814 3401158.9161857804 3616080.2876044856 3174195.211115216 3135143.865721589 2906276.575632875 3265790.723250897 3256113.9860282424 2978007.19774696 3051195.0656584986 0.9541641082206803 1.1146973048252993 1.1851357287194864 1.0403121212540936 1.0275134163029898 0.9525043509486838 1.0703316743028637 1.0671602162300688 0.9760133762881058 1.0 21.540942984987137 3.4974230433454725 24.51383758447252 1.0239290318042191 1.0918447182402342 0.1825478978236208 0.06339273279898344 1012.1575321710819 1222147.900153437 0.01718804007941752 0.026250965275835713 3143.5693327884983 -3.4974230433454725 0.06791568643601509 KWDTCAPEVILHAVGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWDTCAPEVILHAVGGK 17 1 O95861-3;O95861-4;O95861;A6NF51;O95861-2 O95861-3 BPNT1 3(2),5-bisphosphate nucleotidase 1 0 82.70700000000002 0.0042882 236340000.0 210030.0 200630.0 186090.0 174490.0 173840.0 237480.0 210000.0 201760.0 298680.0 236350.0 False True 208899.22181652693 207307.84826660395 212289.85447672397 196580.416109137 195977.4935695937 221063.56656778918 199841.49772209572 216816.35571652098 225074.31610695162 221265.9406505848 0.9441092524330849 0.9369171217994958 0.9594330417620146 0.8884350457695146 0.8857101684667967 0.9990853807766321 0.9031733358261326 0.9798903305181956 1.0172117563379575 1.0 17.755421869379898 1.5454870076118188 4.3900719289332235 1.0064211577372193 0.9316446310978077 0.49302507993506084 0.032404209561217645 0.14031939565328067 5.9745952915345395 0.019477327865527586 0.00835528072243593 35.1145419464925 -1.5454870076118188 -0.07477652663941159 KWENGTFPGWPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWENGTFPGWPK 12 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 88.021 0.016388 485780000.0 814700.0 819590.0 806820.0 664120.0 703230.0 885890.0 853430.0 756840.0 1091900.0 836970.0 False True 810313.7457216799 846869.5576973823 920413.2429948425 748197.523906243 792782.1721292299 824650.5094607492 812146.3304808005 813319.2439556484 822815.8757103931 783553.8580339318 1.0341519442644225 1.080805804239571 1.1746649366315596 0.9548769573843925 1.0117775108892366 1.0524490448300974 1.0364907557453829 1.0379876706834203 1.050107618351821 1.0 19.579672917032564 3.7336924689298017 24.999991454822982 1.0248077157031783 1.0949673846135461 0.40481578590896516 0.042000746331226996 427.1015991194558 2193350.511518145 0.011200130749441775 0.017975692363998957 5416.172265063406 -3.7336924689298017 0.07015966891036785 KWENPGLGAESHTDSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 KWENPGLGAESHTDSLR 17 1 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2;F8VVQ7 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;;; 269.59 1.4453e-28 1893520000.0 1537940.0 1796810.0 1748060.0 1699600.0 1752260.0 1972830.0 1951220.0 1706750.0 2239350.0 2049170.0 False True 1529659.9019211982 1856615.7346554182 1994171.6535901 1914769.1857360878 1975399.9245412839 1836452.9056422925 1856832.0342157485 1834116.3517008931 1687492.1982526497 1918390.2162172976 0.7973664007406157 0.9677987924251996 1.0395026187749377 0.9981124640593978 1.0297174724110085 0.9572885068520783 0.9679115429795455 0.9560705304874956 0.8796397020727436 1.0 20.871464775468567 4.734608382935056 5.3787898622435675 0.9785561469437689 0.7906686543130625 0.6183936653702953 0.04247766735054123 0.09851309879298341 10.535860611224948 0.010558775160344223 0.06827265626755222 54276.068629063484 -4.734608382935056 -0.18788749263070637 KWESPAQNTAHLDQFER ddPTM_BT-474_Trastuzumab_2h_R1 2 KWESPAQNTAHLDQFER 17 1 P17612-2;P17612;Q15136 P17612-2 PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit alpha 0 ; 182.76 4.7342e-10 1883410000.0 750650.0 835810.0 850100.0 871000.0 834020.0 847930.0 924220.0 750520.0 968090.0 961320.0 False True 746608.583805056 863629.4305921852 969786.6907983406 981268.5106943569 940227.5033761658 789314.5949125211 879511.9477367386 806527.6134633379 729517.1912413916 899967.734572542 0.829594834485564 0.9596226591416454 1.0775793992869762 1.0903374343308323 1.044734680208003 0.8770476591446049 0.9772705330980346 0.8961739209977506 0.8106037174631495 1.0 19.779513753649557 2.7371787426772 24.99909608129657 0.9105348931553168 1.0073970293521413 0.21289033694065052 0.08418213240251463 194.49119263469964 3518460.6697764774 0.027801769749090932 0.027587362839541166 545.9825250057287 -2.7371787426772 0.09686213619682449 KWNLDELPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWNLDELPK 9 1 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRX8;J3QR02;J3KTQ4;X6RLV5 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 102.95 0.0056132 595810000.0 1510600.0 1742100.0 1626300.0 1550900.0 1664800.0 1742600.0 1700000.0 1466500.0 1959300.0 1729300.0 False True 1502467.097443439 1800084.7453783117 1855268.9039469918 1747243.780982639 1876802.4119573147 1622138.1636391678 1617764.505369346 1575937.676736113 1476456.768274909 1618934.5934717844 0.928059171446462 1.1118946698878385 1.1459813827119423 1.0792553250935835 1.1592824191448872 1.0019788138324437 0.999277248069714 0.9734412267740445 0.9119928465477203 1.0 20.626613269862723 2.5520072534965963 5.789042569842065 0.9737668617607473 1.089451396583859 0.4249261866849643 0.06318882972103232 0.2139405588708821 12.618658139388884 0.020665287801681705 0.01927918481320124 356.4570868490536 -2.5520072534965963 0.1156845348231117 KWNTTLYEGTWR ddPTM_BT-474_Trastuzumab_2h_R1 1 KWNTTLYEGTWR 12 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 196.93 3.2202e-07 754430000.0 558400.0 713380.0 739320.0 727180.0 577090.0 694180.0 811790.0 659030.0 964020.0 804920.0 False True 555393.6364440721 737124.4220526827 843409.8297153612 819240.9134405558 650578.9908195864 646192.9705239515 772520.6163610473 708210.1650865314 726450.1882061857 753549.3164733179 0.7370368790769619 0.9782032919922146 1.1192496778612966 1.0871762411976973 0.8633529041793279 0.8575324220957371 1.0251759234239861 0.9398325359792269 0.9640380162588977 1.0 19.52334240736576 4.738216664828153 9.239885537405117 0.9800070801186754 0.7361123674673533 0.4575939394357962 0.07986968869497046 0.076336415299328 150.42494416936893 0.020494760762511458 0.11858816360220338 54728.893133683414 -4.738216664828153 -0.24389471265132212 KWQDEDGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 KWQDEDGKK 9 2 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2 P39023 RPL3 60S ribosomal protein L3 0 ; 86.344 0.007987399999999999 4546900000.0 5926300.0 4436000.0 3559200.0 3600000.0 3536800.0 5643300.0 6015000.0 5782800.0 9027900.0 5587100.0 False True 5894393.459273827 4583649.578381376 4060304.4228790104 4055759.630883685 3987190.5157440105 5253191.953899298 5724031.470468598 6214341.900463406 6803095.0126622 5230526.494643035 1.1269216330919472 0.8763266151267616 0.776270692259654 0.7754017946448575 0.7622923848732214 1.0043333035937159 1.094350917891535 1.188091085443878 1.30065205092255 1.0 22.318524741987748 2.338250583074705 2.332994889132376 1.1731285790796575 0.855613741210854 0.5428358823961801 0.12136456530112222 0.21459527859812316 2.396504081203921 0.05185543782800316 0.03892269442105916 217.89666491825986 -2.338250583074705 -0.3175148378688035 KWQTMIEAHVDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 KWQTMIEAHVDVK 13 1 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;D6RB09;D6RAS7;D6RED7 P61247 RPS3A 40S ribosomal protein S3a 0 ; 115.25 0.00044079 1311190000.0 4406600.0 3859200.0 4047200.0 3855800.0 3702200.0 4914800.0 4963200.0 4244600.0 6202900.0 5188400.0 False True 4382875.35521929 3987651.1390643357 4617010.581106975 4343943.884655917 4173653.2253414053 4575051.444194751 4723111.054734792 4561353.605642071 4674278.409601618 4857271.8699872745 0.9023327234987101 0.8209651931784463 0.9505357543676201 0.8943176336282156 0.8592587232207655 0.9418973379817706 0.972379389327278 0.939077269655491 0.9623258764829781 1.0 22.211714808106116 2.5794801241727026 4.933908448760232 0.9607329224103506 0.8862851747048267 0.5690249034281907 0.03410851545045112 0.1788295472226595 6.819866068313641 0.0110540885001208 0.010311467096670392 379.73455972394515 -2.5794801241727026 -0.07444774770552387 KWQVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 KWQVSR 6 1 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 ; 121.29 0.031612 919690000.0 890120.0 853020.0 567600.0 718700.0 581320.0 835530.0 552330.0 623210.0 1110290.0 970040.0 False True 885327.6928216286 881412.2550385201 647513.1463323586 809687.3463100281 655347.656246412 777771.7777260612 525611.6877944998 669717.0947962579 836673.9066237691 908131.2167069736 0.9748896156570478 0.9705780825756208 0.7130171658236163 0.8915973059995466 0.7216442339938555 0.8564530801467036 0.5787838564788581 0.7374673202235655 0.92131389300511 1.0 19.79254124333549 4.252163798730218 24.70960617953291 0.7814123141082838 0.9727340367251942 0.2387860162004546 0.11677917579980196 236.76378540991294 430062.2454064331 0.027224909280244916 0.0736638540777942 17871.614945047968 -4.252163798730218 0.19132172261691038 KWS(ph)DSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWSDSSK 7 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 KWS(0.988)DS(0.012)SK 120.06 0.0028431 526240000.0 1891700.0 1468500.0 1315300.0 1223600.0 1244300.0 1402300.0 1683300.0 1647600.0 2149700.0 1590900.0 True False 1881515.297387628 1517378.1347730057 1500482.8072074526 1378507.6345414647 1402754.2294560843 1305362.301659131 1601872.3481695415 1770552.2783432775 1619935.2395041957 1489367.399961985 1.2632982952598883 1.0188071357085806 1.0074631734558923 0.925565870836605 0.9418456651407091 0.8764541923587487 1.075538747665907 1.1887948389285743 1.0876666425930521 1.0 20.50626825388315 -0.01677006797360414 7.825601630459148 0.9999968429297139 1.0419926373047252 0.012836909246429773 0.11245264473248726 0.0 6.162375252627171e-18 0.11774545913488314 0.027752870891448886 0.9621215273153111 0.01677006797360414 0.04199579437501133 KWS(ph)LNTYK ddPTM_BT-474_Trastuzumab_2h_R1 2 KWSLNTYK 8 1 P53367;P53367-2 P53367 ARFIP1 Arfaptin-1 1 KWS(1)LNTYK;KWS(1)LNTYK 156.01 0.00024486 1749820000.0 3919400.0 1980320.0 1741090.0 1938810.0 1860270.0 2373900.0 2201500.0 2073800.0 3877000.0 2854100.0 True False 3898298.385886276 2046233.754071281 1986220.3381744255 2184263.1472093314 2097164.3578158575 2209797.8805595213 2095005.0344533008 2228557.4865430263 2921565.2991383765 2671948.8944820557 1.4589719114526487 0.7658206930143899 0.7433601526871436 0.8174793880676899 0.7848819122801309 0.827035983032108 0.7840737668223281 0.8340569279394924 1.0934210999214145 1.0 21.349460983430152 4.742421492030374 24.97864270003824 0.8348352939291618 1.4589721544507614 0.7463647400351825 0.10616565908257566 175.46575416508057 1135162.0734445837 0.02435775406234193 0.18511079263717575 55261.3502264219 -4.742421492030374 0.6241368605215997 KWSDS(ph)SK ddPTM_BT-474_Trastuzumab_2h_R1 1 KWSDSSK 7 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 KWS(0.146)DS(0.851)S(0.004)K 87.323 0.011899 752360000.0 1532500.0 1284200.0 1162900.0 1023900.0 1062800.0 1398700.0 1408700.0 1358600.0 1881000.0 1480100.0 True False 1524249.1902767557 1326943.8206847073 1326626.2118920004 1153525.6350171675 1198141.280290866 1302011.1611856427 1340555.7992434113 1459985.6308310116 1417452.7541086646 1385638.7508226375 1.1000336049867447 0.9576405249181407 0.9574113102021706 0.8324865585148603 0.8646851710660831 0.9396469032153251 0.9674641377108854 1.0536553123707282 1.0229598106051376 1.0 20.402119751526502 1.9422525720723829 3.893643285965249 1.0293833300177062 0.9356421806141945 0.23118810364658593 0.06726421181117666 0.3270341591163098 9.474132925349211 0.033932574661702554 0.019780028788791294 87.54927863924262 -1.9422525720723829 -0.09374114940351175 KY(ph)DPELSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYDPELSSR 9 1 H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4;H3BV44 H3BRD5 MYO9A Unconventional myosin-IXa 1 KY(1)DPELSSR 53.327 0.074277 0.0 210570.0 226700.0 208290.0 178640.0 193210.0 197980.0 211360.0 197270.0 211450.0 194600.0 True False 209436.3145165264 234245.57245695626 237615.42151086457 201255.80568362822 217814.14825460923 184294.10859479048 201135.7093263909 211991.28911676307 159340.9807848363 182180.46139455814 1.1496090904223741 1.2857886661601865 1.30428597936333 1.1047057634120137 1.1955955462363073 1.0116019422942106 1.10404654696082 1.1636335065462482 0.8746326558024402 1.0 17.47500871480236 2.62356207743675 0.46432953604393135 0.9876823367370778 1.2651101030846423 0.5110334151801824 0.08755648389017302 1.0086349609062362 0.4520070901716631 0.08461065838572754 0.1088446756539501 420.30260084095636 -2.62356207743675 0.2774277663475645 KYAEAVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 KYAEAVTR 8 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 125.97 0.001987 2375530000.0 3214200.0 3779400.0 3475500.0 3447000.0 3121700.0 4566400.0 4950400.0 3933700.0 6329300.0 4853900.0 False True 3196895.1043311893 3905195.044304452 3964820.190412459 3883389.8465711316 3519229.991234478 4250735.5161493635 4710930.23963553 4227252.668923865 4769528.82327484 4544119.946367137 0.7035234857493129 0.8593952383291548 0.8725166230662974 0.8545966859162166 0.7744579880748917 0.9354364687375112 1.0367090427271295 0.9302687250373758 1.0496045173912958 1.0 22.115569485976884 2.5550058489705525 4.487614678520434 0.9922135966010753 0.8218795937918577 0.7260081938666627 0.05540703019112748 0.12728475866462816 4.7098587360817925 0.018365778735720224 0.016950751180638407 358.92676854930403 -2.5550058489705525 -0.17033400280921762 KYCEDESR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYCEDESR 8 1 Q92797;A0A087WUE9 Q92797 SYMPK Symplekin 0 107.21 0.010843 0.0 388770.0 377080.0 341080.0 327260.0 328470.0 397950.0 401080.0 348590.0 459050.0 443170.0 False True 386676.90551640786 389630.8798503266 389101.0992794942 368691.08244527585 370298.7075057786 370440.65317353717 381678.2281256101 374603.5559041538 345923.2784548548 414886.511183074 0.932006452592964 0.9391264101097685 0.9378494812230672 0.8886552647709152 0.8925301197425036 0.892872251057773 0.9199581520190463 0.9029060858979221 0.8337780793799096 1.0 18.662357227414923 3.749939120133535 23.29058473298389 0.9005655645624525 0.9366073544987583 0.11955962395316 0.038760796735767745 526.6791100310577 1078048.867260972 0.009211251498123935 0.01639804891521372 5622.625011049512 -3.749939120133535 0.0360417899363058 KYDAFLASESLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYDAFLASESLIK 13 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 165.49 5.6505e-05 1758700000.0 1712100.0 1725500.0 1680100.0 1478500.0 1343500.0 1796800.0 1927000.0 1627000.0 2536000.0 1936000.0 False True 1702882.2438321912 1782932.2244132233 1916643.4763090115 1665677.9484059801 1514586.7614516178 1672591.445212244 1833783.648145133 1748415.001738599 1911036.7806589943 1812442.8225070105 0.9395508772391105 0.9837177770645655 1.0574918295396862 0.9190237218639417 0.8356604371974661 0.9228381852613033 1.011774620072485 0.9646731913562675 1.0543983826290346 1.0 20.789504052183204 -0.4330429602004582 6.002750675051453 0.9999992161329024 0.9643184423864655 0.025638790968501635 0.06353169488258084 0.0 5.001131306346915e-26 0.06412747965781544 0.015114991908814567 0.36894110128943075 0.4330429602004582 -0.03568077374643697 KYDDVTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYDDVTEK 8 1 P51572;P51572-2;C9JSP1;C9JQ75;C9J0M4;A0A2R8Y5M6;C9JMD7;C9JM14 P51572 BCAP31 B-cell receptor-associated protein 31 0 ; 76.143 0.05863 303210000.0 558040.0 549250.0 602630.0 396930.0 585900.0 864480.0 614660.0 529440.0 793030.0 668770.0 False True 555035.574644072 567531.4542213641 687475.0658461399 447181.29730185075 660510.8920986252 804720.5323670292 584926.5475707772 568949.501241846 597598.3825575724 626088.5260371973 0.8865129315771809 0.906471578090613 1.0980476997358286 0.7142461148941144 1.054980030187269 1.2853142948657375 0.934255338095791 0.9087365086260077 0.9544950237948743 1.0 19.256007136459235 4.447882346939661 24.982970039424938 0.9869534298916489 0.8915023464710251 0.07272652056394757 0.1380223429637289 523.288788986795 447119.9616144946 0.03457154611645595 0.0946810349841987 28046.737315698436 -4.447882346939661 -0.0954510834206238 KYDVDTLDMVFLDHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYDVDTLDMVFLDHWK 16 1 P21964-2;P21964;E7EMS6;E7EUU8;H7BZ45 P21964-2 COMT Catechol O-methyltransferase 0 ; 272.4 2.3061e-35 5999000000.0 9160600.0 8879500.0 7759500.0 7078000.0 7561700.0 9823500.0 10158300.0 9071700.0 13385000.0 9986400.0 False True 9111280.347438334 9175048.789728893 8851970.15321693 7974074.074276304 8524637.673292674 9144424.56703164 9666904.220525553 9748676.3191592 10086446.09981099 9349059.402212817 0.9745665264766417 0.9813873668999539 0.9468300256089686 0.8529279504191545 0.9118176820306638 0.9781117194385628 1.033997518321202 1.0427440772118528 1.0788728219465202 1.0 23.156389793787163 2.3766053902103486 2.8443683522535985 1.0435811346651485 0.932862459898731 0.6299265688231097 0.03797093793811627 0.18105461560551478 2.9794039321581947 0.016010457151818994 0.012814872735528686 238.0155823120482 -2.3766053902103486 -0.1107186747664175 KYDYDSSSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 KYDYDSSSVR 10 1 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ; 102.4 0.0047334 1615210000.0 3658900.0 3335600.0 3138500.0 2877400.0 2677400.0 3930300.0 3829600.0 3375400.0 5633400.0 3873500.0 False True 3639200.888942009 3446623.4295872184 3580373.519668971 3241678.5449735345 3018351.0198068917 3658607.6119310344 3644347.617507319 3627289.487933901 4245124.053692584 3626289.9137298106 1.0035603814144354 0.9504544621591502 0.9873379141896539 0.8939380529670102 0.8323523743589423 1.0089120558394582 1.0049796635699586 1.0002756465224432 1.1706521416337266 1.0 21.790062839243664 1.8790607161640847 1.451132817032569 1.0715097586601017 0.939623367478219 0.3909663894211499 0.06484059183224652 0.42002200921867267 1.6537180353252297 0.048133507257483964 0.020812217931561034 75.69387107852599 -1.8790607161640847 -0.13188639118188272 KYEDICPSTHNMDVPNIK ddPTM_BT-474_Trastuzumab_2h_R1 9 KYEDICPSTHNMDVPNIK 18 1 P63241;P63241-2;I3L397;I3L504;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 P63241 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 0 ;;;;;;;; 256.66 8.7012e-31 16448300000.0 5279508.0 6387146.0 6177051.0 5804329.0 6135821.0 8016487.0 7842831.0 7231948.0 9494970.0 8102131.0 False True 5251083.715536482 6599738.293498716 7046726.088910216 6539156.456268739 6917181.4344896395 7462326.1224705875 7463443.302006109 7771632.682847839 7155061.869579556 7585046.062996661 0.692294242107992 0.870098643921923 0.9290287798366028 0.8621116341230606 0.9119498256226587 0.9838208048432615 0.9839680919561206 1.0245992731357867 0.9433115910113236 1.0 22.854726511122134 6.021551578596473 0.44193145804928075 0.9945602769083226 1.036056609465824e-15 0.8140670090374441 0.03949343634295545 6.418650556821806 0.404040455335131 0.02682965252769015 4.252740208892717 1050876.2538348134 -6.021551578596473 -0.9945602769083216 KYEDICPSTHNMDVPNIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 KYEDICPSTHNMDVPNIKR 19 2 P63241;P63241-2;I3L397;I3L504;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 P63241 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 0 ; 217.97 2.0865e-19 3022900000.0 1486410.0 2319100.0 2388000.0 2439700.0 2371700.0 2514300.0 2844100.0 2570700.0 3645200.0 3027200.0 False True 1478407.3337156747 2396289.841574446 2724209.643131909 2748565.769851925 2673721.93683275 2340492.3590255696 2706520.0174829136 2762538.687750102 2746889.3031775123 2834001.5042836885 0.5216678013335605 0.8455499539969803 0.9612590674402164 0.9698533207189112 0.9434440782022626 0.8258613679237068 0.955017142154624 0.9747837760757826 0.9692617661019223 1.0 21.434409093360642 4.729052280296314 2.4511615839627354 0.9467937865120138 0.4303465913726793 0.8927113454279179 0.044602320436571176 0.1587393126528668 1.1985814015323744 0.01166253870213679 0.1709037703383094 53586.11605067489 -4.729052280296314 -0.5164471951393346 KYEEIDNAPEER ddPTM_BT-474_Trastuzumab_2h_R1 1 KYEEIDNAPEER 12 1 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 128.95 0.00038944 779590000.0 765660.0 742200.0 729060.0 614240.0 752030.0 1183800.0 742980.0 640620.0 1028100.0 874780.0 False True 761537.7716328225 766903.6783306261 831705.3108968798 692002.7210205536 847796.5628689695 1101966.6923654573 707039.2189407753 688426.3174024468 774738.5308341933 818950.7914631634 0.9298944204843309 0.9364465927927753 1.015574219558331 0.8449869372300131 1.0352228384250894 1.3455835244955912 0.8633476227278034 0.8406198816567263 0.9460135320829484 1.0 19.64341724126658 KYEEVAR ddPTM_BT-474_Trastuzumab_2h_R1 7 KYEEVAR 7 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ;;;;;; 128.69 0.005986399999999999 52353100000.0 37100800.0 38031200.0 34531900.0 32492400.0 31303900.0 39138700.0 41115200.0 34951400.0 48873900.0 41334600.0 False True 36901053.415086366 39297045.50165409 39393691.363344565 36605934.50847916 35290266.1122481 36433133.79158974 39126300.70068341 37559650.94761306 36829582.22170734 38696590.439668566 0.9535996064722653 1.0155170017607025 1.0180145308864574 0.9459731230210341 0.911973528191554 0.9415075947942297 1.0111046026570427 0.9706191300283136 0.9517526428879551 1.0 25.205703120181216 3.7337637081286523 24.73639791509037 0.9613645275725051 0.9976910419064465 0.19492788021339114 0.03144890989923385 557.1280825561208 2872966.362655656 0.008788556350656227 0.014106776723825341 5417.060776054495 -3.7337637081286523 0.036326514333941406 KYEFGESDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 KYEFGESDLR 10 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 118.48 0.0013132 3761800000.0 11480800.0 12525700.0 11419300.0 11264200.0 11272900.0 12776300.0 13097700.0 12059100.0 15953800.0 13699700.0 False True 11418988.648436796 12942610.35255444 13027038.181665076 12690246.56505554 12708436.995286899 11893104.453175193 12464114.212927092 12959011.276869036 12022199.759967465 12825373.41709674 0.8903435617098543 1.0091410153642326 1.0157238902923098 0.9894640999800388 0.990882415816918 0.9273105793022139 0.9718324611361354 1.0104198026385844 0.9373761970892316 1.0 23.61249749543575 -1.9679322660401117 2.9560964629908324 1.019119487947509 0.9762167296906337 0.032880307062171155 0.03936885953130625 0.008525644956163685 9.248630909686752e-05 0.06551137225753786 0.008657224681093643 0.010766331156889847 1.9679322660401117 -0.042902758256875284 KYEGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 KYEGGR 6 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;; 121.29 0.031612 13906300000.0 3286520.0 3481250.0 2986700.0 2882540.0 3021030.0 1861120.0 3404900.0 3302890.0 3972610.0 3282130.0 False True 3268825.7414866984 3597121.301789932 3407201.399138223 3247469.2684465144 3405740.2634523134 1732465.1550052383 3240191.979018875 3549368.423535587 2993613.495746739 3072661.6534271324 1.0638417470536567 1.1706857791445526 1.1088762068345395 1.0568912671606416 1.1084006791485412 0.5638320617152595 1.0545228679522476 1.155144569717513 0.974273718815664 1.0 21.55105748243237 KYELGR ddPTM_BT-474_Trastuzumab_2h_R1 6 KYELGR 6 1 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ;;;;; 135.35 0.021868 4042770000.0 3825200.0 3839700.0 3575290.0 3330103.0 3306160.0 3831920.0 3703390.0 3603780.0 4427400.0 3868720.0 False True 3804605.548219675 3967502.0933523327 4078659.755022229 3751693.6983568477 3727179.8788543977 3567028.389769424 3524242.8773763413 3872712.363224047 3336326.59412052 3621814.977422166 1.0504693287583704 1.0954458242856486 1.1261369728845794 1.0358601203386495 1.0290917404917315 0.9848731677365429 0.9730598883007348 1.0692739378918956 0.9211753264367903 1.0 21.788281416558267 3.393979268083253 2.3234715210408727 1.000672552384195 1.0905213660286959 0.5243539340468033 0.039930780132691815 0.24720836981197694 2.705354027652058 0.011856652932307817 0.017805296514765732 2477.3037957532038 -3.393979268083253 0.08984881364450081 KYELGRPAANTK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYELGRPAANTK 12 2 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ; 168.76 2.5683e-05 4669100000.0 4480100.0 4937800.0 4655600.0 4535900.0 5042400.0 5619300.0 5794900.0 5637300.0 8857900.0 6522700.0 False True 4455979.639385904 5102151.688036863 5311068.012799379 5110144.474923701 5684519.751353661 5230851.017409367 5514578.548332254 6057983.951629381 6674989.234778915 6106415.701635575 0.7297209782479092 0.8355395271681676 0.8697521217523456 0.8368484434420298 0.9309093958066249 0.8566156110217501 0.9030794524609912 0.9920687106196812 1.093110846186094 1.0 22.54189437542209 2.440439155771133 0.4828645638717166 1.0489076339017662 0.7868210382691555 0.7285991038753714 0.05116087944549162 0.5584290218497465 0.2737996075014431 0.049766331723383656 0.053287629663380964 275.70151701801325 -2.440439155771133 -0.2620865956326107 KYEMFAQTLQQSR ddPTM_BT-474_Trastuzumab_2h_R1 4 KYEMFAQTLQQSR 13 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;; 258.91 9.5224e-24 5115450000.0 4374880.0 5156220.0 7168130.0 3352696.0 1406677.0 2716070.0 4403870.0 2299587.0 9333240.0 3614820.0 False True 4351326.1321748635 5327841.6656991895 8177340.397497127 3777146.9698403315 1585808.9779222037 2528314.4738410586 4190837.983682886 2471193.8590061786 7033188.061008593 3384119.092796894 1.2858076246301948 1.574365889498249 2.4163867089969195 1.1161389024044688 0.4686031828187141 0.7471115538523991 1.2383837178198296 0.7302325335612807 2.0782921251142583 1.0 21.690348909520875 3.5067173347484393 23.776648398790098 0.9917866583245764 1.7447147098818745 0.3063100621238386 0.48312801843515163 424.6980734219831 341188.76123298897 0.12640960848153884 0.19540620863848096 3211.5695735261424 -3.5067173347484393 0.7529280515572981 KYEPPVPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYEPPVPTR 9 1 P62191 P62191 PSMC1 26S protease regulatory subunit 4 0 104.82 0.0051270000000000005 327310000.0 313980.0 365380.0 345290.0 308710.0 339300.0 443900.0 330040.0 357490.0 465740.0 391930.0 False True 312289.5665664571 377541.45242312574 393903.83068551746 347792.654347251 382507.84381133947 413214.237828203 314074.7043247642 384167.71909743734 350964.61759626254 366916.69185184536 0.8511184514128189 1.0289568744274258 1.0735511341756265 0.9478790746529561 1.0424923485513968 1.1261799939999781 0.8559836913922197 1.0470161963974036 0.9565239886605541 1.0 18.485093011904482 4.7430782136964655 23.560384172860164 1.0096284875943122 0.8511183030360154 0.3053139268834908 0.07131222290407119 246.80823335789086 1287057.480888211 0.01610774048583576 0.12620129111313508 55344.97730537695 -4.7430782136964655 -0.1585101845582968 KYESVLQLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYESVLQLGR 10 1 A0A087X1E4;P53365;P53365-2;P53365-3;E9PRV8 A0A087X1E4 ARFIP2 Arfaptin-2 0 159.94 1.2076e-05 785260000.0 676520.0 762510.0 635800.0 632000.0 567350.0 655680.0 671440.0 601290.0 886790.0 751670.0 False True 672877.6914884375 787889.6844029716 725315.1135273316 712011.1351995798 639598.6595530891 610354.3849046994 638959.8820501133 646161.3130887533 668252.486877205 703697.7770629366 0.9562026674247365 1.119642139117494 1.0307196315932965 1.011813818954127 0.9089110132230606 0.8673530097709988 0.9080032691263805 0.9182369678438853 0.9496299528845016 1.0 19.424596430076726 3.339747605877984 3.785605411426038 0.9171836631544225 1.041055211407994 0.5169862463671685 0.049161856818926875 0.1563348214783919 4.250412940810488 0.01344560597997216 0.018466642730331988 2186.4905560988295 -3.339747605877984 0.1238715482535716 KYFLHDDRDDGVDYWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYFLHDDRDDGVDYWAK 17 2 Q9NYF8;Q9NYF8-2;H0YF14;Q9NYF8-4 Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 52.453 0.085998 584720000.0 368140.0 427950.0 402250.0 424370.0 406540.0 452390.0 472940.0 390690.0 663800.0 522370.0 False True 366157.9751441991 442194.0570487622 458883.3035803223 478095.198488364 458310.4592486349 421117.34411151276 450062.08539375226 419845.27168362157 500215.3844642907 489031.8993765433 0.7487404719630895 0.9042233392392323 0.9383504515049901 0.9776360174006598 0.9371790671179641 0.8611244882969528 0.9203123272071355 0.8585232828755622 1.022868620844581 1.0 18.899569049167173 4.736090223193371 3.4052142167919004 0.9281897446208737 0.7261703008700302 0.5460338110255072 0.05116391482463642 0.23992882234336596 4.717646605032253 0.012361578451577997 0.12565490297771054 54461.57831572151 -4.736090223193371 -0.20201944375084346 KYGGSVGSQPPPVAPEPGPVPS(ph)SPSQEPPTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 32 2 A0A087WTZ5;Q04323;E9PJ81;E9PRQ7;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 KYGGSVGSQPPPVAPEPGPVPS(0.536)S(0.44)PS(0.017)QEPPT(0.006)KR 104.0 3.1429e-06 166550000.0 53599.0 52415.0 56962.0 52194.0 58344.0 59724.0 56538.0 54936.0 74058.0 62208.0 True False 53310.42893940871 54159.60158946339 64981.754477420305 58801.75504842858 65773.76256801873 55595.420455173655 53803.04094386593 59035.60327935561 55807.39822635805 58237.832181051686 0.9153917126186204 0.9299728297078477 1.1157996794146268 1.0096831019675279 1.1293992256363372 0.9546272306691771 0.9238503379830704 1.013698502647279 0.9582670943668057 1.0 15.829669033852303 1.2521017044926377 24.57168408568047 0.9791335241893092 1.0007210344329704 0.01181365654610489 0.07158272769880927 1109.3235910865692 2013011.1533847614 0.04994269901442465 0.01799832093604937 17.86905989306897 -1.2521017044926377 0.021587510243661234 KYGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 32 2 A0A087WTZ5;Q04323;E9PJ81;E9PRQ7;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 KYGGSVGSQPPPVAPEPGPVPS(0.16)S(0.673)PS(0.16)QEPPT(0.008)KR 104.88 2.9807e-06 407640000.0 163370.0 150140.0 150990.0 134990.0 140750.0 153800.0 142890.0 126740.0 186290.0 142740.0 True False 162490.4340721132 155137.3191384533 172248.07957139311 152079.7201591633 158673.67820938985 143168.1680062573 135977.8648071918 136197.98237267978 140381.32565810907 133630.21099413774 1.2159707962987616 1.160944953871689 1.2889905530340704 1.138063908062189 1.187408723139341 1.0713757535901667 1.0175682863597144 1.019215500442895 1.0505208710945424 1.0 17.027886682280176 2.6946536125619374 1.678591206921524 1.0197173533104567 1.2066375147192108 0.8275418438315744 0.038580227346796406 0.1371243823852924 0.7718370460012158 0.014703548583553291 0.013817382017847034 495.05518394279403 -2.6946536125619374 0.18692016140875412 KYHNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYHNPK 6 1 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 86.344 0.034849 1052200000.0 2347600.0 2471600.0 2191000.0 1856900.0 2070900.0 1917400.0 2632500.0 2296100.0 3281300.0 2663000.0 False True 2334960.7824428817 2553865.7118862486 2499473.755486603 2091983.349607754 2334616.8398140357 1784854.6510741052 2505155.9178734124 2467446.641359553 2472667.582167334 2493045.0600909987 0.9365898835208591 1.0243961301658262 1.0025786519058624 0.8391277731383622 0.9364519226655373 0.7159335704140687 1.0048578575559206 0.9897320673656371 0.9918262697093325 1.0 21.249477528119225 -0.3737629441871322 6.740944250581991 1.0000003639354769 0.9395718717303831 0.04086085441216836 0.08988635577041072 0.0 0.0 0.08905163757713629 0.020989672268853288 0.42289938717810005 0.3737629441871322 -0.06042849220509372 KYHNVGLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYHNVGLSK 9 1 Q14103-3;Q14103;H0Y8G5;H0YA96;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ; 129.38 0.00025371 5678500000.0 10045400.0 11132400.0 11884800.0 9640400.0 9398300.0 12309700.0 12228200.0 10379300.0 16144000.0 12464200.0 False True 9991316.682548856 11502935.20432209 13558076.535466537 10860873.651547512 10595117.796911618 11458759.412916925 11636675.24973967 11153856.071017468 12165527.518516896 11668724.084861508 0.8562475734181729 0.9857920301025452 1.161915941868588 0.9307678862368453 0.9079928293666023 0.9820062013277886 0.9972534413455352 0.9558762371875767 1.0425756432359148 1.0 23.476143482576603 1.2394603722013757 24.99448619922734 1.0212878199105897 0.9759914323523743 0.06105946601915613 0.07580947445587817 79.0143848809824 2195513.124426751 0.05892327355029815 0.01860976756308116 17.356428845184606 -1.2394603722013757 -0.04529638755821541 KYIEIDS(ph)DEEPRGELLSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 KYIEIDSDEEPRGELLSLR 19 2 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR 170.65 6.1492e-12 188645000.0 118859.0 157861.0 139879.0 173368.0 144562.0 172428.0 178771.0 156778.0 248980.0 204455.0 True False 118219.07635047624 163115.30795601042 159572.74734993657 195316.37102417843 162971.11381389588 160508.45821185267 170123.16375846099 168477.57046255324 187622.21516107148 191406.50685726808 0.6176335292437695 0.8521931183752577 0.8336850714742422 1.0204270180314503 0.851439778562092 0.838573676763998 0.888805540374455 0.8802081665289835 0.9802290331800552 1.0 17.546280349460062 5.059107600183505 1.4371710656787886 0.9062035639942368 0.26547426878004843 0.6602717902780554 0.0634206480169359 1.6158015656746245 1.664313954548571 0.016500967547052287 1.8519826516348115 114579.67872647753 -5.059107600183505 -0.6407292952141884 KYKPLDLRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYKPLDLRPK 10 3 P42766 P42766 RPL35 60S ribosomal protein L35 0 96.015 0.0030791 729460000.0 2933700.0 2498600.0 2533700.0 2080700.0 2147600.0 2949900.0 3038900.0 2982100.0 4594400.0 3281200.0 False True 2917905.285164709 2581764.3905644054 2890422.936684802 2344116.4066610252 2421084.1301775184 2745980.3563176724 2891896.7972746487 3204639.44479697 3462171.681805875 3071791.006823348 0.9499035835065558 0.8404752747923118 0.9409568978697854 0.7631106417897754 0.7881669439097846 0.8939346297381708 0.941436702839125 1.0432478764598656 1.127085688484463 1.0 21.55064863314489 1.9264408751011213 1.9748633282131127 1.0688221823011066 0.8561216804918593 0.6615699850458374 0.06224568363554185 0.1929219777875187 1.3928419489235546 0.038598179256028965 0.018729349315910023 84.41913057875897 -1.9264408751011213 -0.21270050180924727 KYNRFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYNRFEK 7 2 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 ; 55.902 0.070213 2846400000.0 1674870.0 2220800.0 2238600.0 2319000.0 2081900.0 2318200.0 2285200.0 2118100.0 3173000.0 2589400.0 False True 1665852.686015552 2294717.985498051 2553775.421739985 2612585.162227571 2347017.6246119244 2157948.2904558238 2174656.145688253 2276163.3774938677 2391056.6660216847 2424142.2751031267 0.6871926219531336 0.9466102749272134 1.053475882157677 1.0777359023271138 0.9681847673367598 0.8901904449333616 0.8970827199470954 0.9389561829233131 0.9863516224186824 1.0 21.20904294369699 4.732042499224289 4.74958824334677 0.9705010144657163 0.6723014323710663 0.695602944106197 0.056926489304665644 0.10980927182985017 6.994938698525742 0.015622205546733789 0.10769682018835317 53956.34205722712 -4.732042499224289 -0.29819958209465003 KYPDYESK ddPTM_BT-474_Trastuzumab_2h_R1 4 KYPDYESK 8 1 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ;;; 104.05 0.0074646 1888610000.0 3680900.0 3987720.0 3440650.0 3239710.0 3632240.0 4254750.0 4417560.0 4385110.0 6135480.0 4079940.0 False True 3661082.4433864364 4120448.8495723535 3925063.613334086 3649856.9538250505 4094784.2340268106 3960629.1471041846 4203865.746082002 4712349.175337397 4623473.165219893 3819554.73618763 0.9585102705035803 1.0787772748833682 1.0276233447178627 0.9555713181029164 1.0720580059323597 1.0369347792243877 1.1006167044166935 1.2337430671410883 1.2104743836803002 1.0 21.864973035507923 2.077285874281857 3.308679071346896 1.1732301572230524 1.023338818545882 0.382404076462057 0.07064574946163764 0.20111109491276594 4.373326418778133 0.029219146855858885 0.019234985223144874 119.47743056967659 -2.077285874281857 -0.1498913386771703 KYPNKYESIIATLCENLDSLDEPDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYPNKYESIIATLCENLDSLDEPDAR 26 2 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7EJ01 P63010 AP2B1 AP-2 complex subunit beta 0 193.47 1.6085e-18 291910000.0 458640.0 426810.0 411750.0 374760.0 385910.0 504510.0 482780.0 435380.0 620340.0 520800.0 False True 456170.7331996946 441016.11283790687 469720.8210048427 422204.57757499116 435053.351032225 469634.4111887963 459426.0870013014 467870.2664148441 467465.51913012716 487562.0981206874 0.9356156578987761 0.9045332164616723 0.9634071697028664 0.8659503665325557 0.8923034680282618 0.9632299413736352 0.942292456226937 0.9596116437644647 0.9587814986685332 1.0 18.895226453186883 2.7256088988912417 24.61549936664527 0.9602341377094321 0.9121844662203078 0.4684129893244908 0.027710782332118523 613.2350192315635 1165486.4600565222 0.008863797759038722 0.008407892089869704 531.6292882880042 -2.7256088988912417 -0.04804967148912431 KYPNKYESVIATLCENLDSLDEPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYPNKYESVIATLCENLDSLDEPEAR 26 2 Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7;H7C034 Q10567-4 AP1B1 AP-1 complex subunit beta-1 0 211.13 6.6509e-26 201410000.0 342440.0 312580.0 282220.0 239900.0 260850.0 370500.0 336050.0 337400.0 439590.0 400970.0 False True 340596.341088661 322984.0363414002 321954.1228997852 270271.31540249864 294067.7013209186 344888.2070631883 319793.9776643342 362578.50128248514 331258.9347042145 375379.75131231186 0.9073380753702097 0.8604194424772821 0.8576757850529952 0.7199943909005253 0.7833872239854981 0.9187714730415629 0.8519212252295119 0.9658978674660152 0.8824635147371354 1.0 18.517991305028637 2.042354755402209 1.31818431517631 0.9502423904438516 0.8285589648280757 0.398835355716616 0.06024277734245776 0.4704029794554405 1.5255307152721331 0.04367560585373163 0.021166384191910043 110.24394744860457 -2.042354755402209 -0.12168342561577594 KYPS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 6 KYPSPQK 7 1 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK 85.958 0.012513 9178100000.0 8108140.0 6212950.0 5624690.0 5275700.0 5040920.0 7484510.0 7882270.0 7280070.0 11455600.0 7369310.0 True False 8064486.675139033 6419744.28494242 6416597.461318094 5943603.079070293 5682851.282126309 6967123.440341425 7500974.486904486 7823345.79084642 8632520.877175545 6898994.326616295 1.1689365570321275 0.930533347472844 0.9300772195974832 0.8615173165369762 0.823721692334474 1.0098752239094166 1.0872562190645314 1.133983508388169 1.251272354851969 1.0 22.717954643425646 2.268684334767963 2.661859633021177 1.1359694503098074 0.9361434560450967 0.38889670055538395 0.10294499713020859 0.26210349523290094 3.8170567298612537 0.043140942623173674 0.031567462126510897 185.64546078725954 -2.268684334767963 -0.1998259942647107 KYPYLWLCYNGEIYNHK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYPYLWLCYNGEIYNHK 17 1 P08243-2;P08243;F8WEJ5;C9J057;C9JT45;C9JM09;C9JLN6 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 223.9 1.8772e-15 461420000.0 146540.0 154250.0 164720.0 145650.0 142390.0 169010.0 169200.0 158900.0 254350.0 192610.0 False True 145751.04492212457 159384.1180039059 187911.14422809365 164089.2750661692 160522.52248834842 157326.73650674586 161015.1495932314 170757.92487785063 191668.8506153846 180317.4648982827 0.8083024292979214 0.8839083784469501 1.0421128332416083 0.9100021185342871 0.8902217130154274 0.8724986045888238 0.8929537118551454 0.9469849466560291 1.0629522255290427 1.0 17.46017961220474 1.4270913461963166 3.8533906469624455 1.0298946832916775 0.9045198817006954 0.4536194017030921 0.056786777880436075 0.21086854185988763 5.521565029174212 0.042939614582608386 0.01518373112906759 26.73568687620237 -1.4270913461963166 -0.12537480159098213 KYQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYQEDSDPERSDYEEQQLQK 20 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 KYQEDS(1)DPERS(0.999)DY(0.001)EEQQLQK;KY(0.001)QEDS(0.999)DPERS(0.995)DY(0.005)EEQQLQK 208.58 2.9715e-22 364840000.0 451580.0 299860.0 243770.0 264410.0 285000.0 421860.0 441610.0 393000.0 588990.0 410590.0 True False 449148.7434552544 309840.6588308024 278090.6971131764 297884.27888943214 321293.0606726542 392697.81115162367 420247.6371859748 422327.655613564 443841.3065616491 384385.7946762161 1.168484240770632 0.8060668815604747 0.7234676748328424 0.774961725992898 0.8358609114139937 1.0216241510236068 1.0932964823530136 1.0987077604397633 1.154676662636596 1.0 18.55219549543698 2.60343762612493 3.1639923938491616 1.0933780745982946 0.8456850137801181 0.45018585811251344 0.11781773588592111 0.2254948138952095 4.275466836001987 0.04153723375225961 0.03844101078081834 401.27086313922564 -2.60343762612493 -0.24769306081817655 KYQEDS(ph)DPERSDYEEQQLQK ddPTM_BT-474_Trastuzumab_2h_R1 4 KYQEDSDPERSDYEEQQLQK 20 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 KYQEDS(1)DPERSDYEEQQLQK;KYQEDS(1)DPERSDYEEQQLQK;KYQEDS(1)DPERSDYEEQQLQK;KYQEDS(0.999)DPERS(0.001)DYEEQQLQK 238.69 6.3823e-30 2874280000.0 3052690.0 2516010.0 2455060.0 2159940.0 2279350.0 3441940.0 3519930.0 3065390.0 4146190.0 3430780.0 True False 3036254.6562257432 2599753.8718898403 2800711.108235939 2433388.1825363617 2569611.7117340844 3204006.789255249 3349657.5384616037 3294144.967535021 3124417.030599575 3211824.683161465 0.9453363604009343 0.809432060697301 0.8719999951800425 0.7576341869759615 0.8000473142901321 0.9975659026636159 1.04291419018689 1.0256303791440218 0.972785671328781 1.0 21.61496171509458 2.6984737015434184 6.816407234783175 1.0143502095128032 0.8329318669299463 0.7475098045017361 0.049574696065546334 0.10698027941403554 14.534920918287394 0.016046591079101166 0.015265872681126254 499.4289366559378 -2.6984737015434184 -0.18141834258285694 KYQEDS(ph)DPERSDYEEQQLQKEEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 KYQEDSDPERSDYEEQQLQKEEEAR 25 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 KY(0.004)QEDS(0.99)DPERS(0.005)DY(0.001)EEQQLQKEEEAR 55.587 0.074562 459780000.0 186680.0 173750.0 172000.0 184500.0 170520.0 300190.0 259770.0 233010.0 328840.0 266730.0 True False 185674.935622098 179533.16371590685 196216.10494919936 207857.6810827888 192234.71124877568 279438.57187125087 247203.93268223223 250398.38940080543 247801.78823024605 249707.06304095802 0.7435710202223748 0.7189751123958358 0.7857851618598997 0.8324060943710474 0.7698409044090376 1.119065550121889 0.9899757326515221 1.0027685494812537 0.992369960274614 1.0 17.92987710335232 2.7537319108635363 24.887147186702485 1.0169124612400902 0.7716056044063504 0.8885213302713105 0.04439149044355823 244.07454286552763 400381.97569532966 0.014034148483445603 0.014833098498272095 567.194369341928 -2.7537319108635363 -0.24530685683373976 KYS(ph)ASSGGLCEEATAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYSASSGGLCEEATAAK 17 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 KYS(0.995)AS(0.005)SGGLCEEATAAK;KYS(0.999)AS(0.001)SGGLCEEATAAK 344.52 1.4676e-73 1171280000.0 1389200.0 1036710.0 956670.0 924210.0 885690.0 1245200.0 1119360.0 1255340.0 1777610.0 1389300.0 True False 1381720.7015546293 1071216.2656455715 1091360.8204752945 1041214.8912386125 998477.371604082 1159122.25488551 1065212.2804295488 1349019.8452873586 1339541.8342536434 1300633.684560429 1.0623442387789648 0.8236110431105795 0.8390993047701499 0.8005443066704123 0.7676853086743899 0.8911980895506754 0.8189948431095379 1.037201989538878 1.029914763976272 1.0 20.310783262446098 1.7128202429190902 6.640624237099173 1.02420859392133 0.8513190584152313 0.48997453002481517 0.07663234324446473 0.10466613810916671 11.241147231766206 0.037948480552024225 0.019603306980954603 51.62026656809597 -1.7128202429190902 -0.17288953550609865 KYS(ph)EVDDSLPSGGEKPSKNETGLLSSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYSEVDDSLPSGGEKPSKNETGLLSSIK 28 3 Q05D32-2;Q05D32;H0YMH7;H0YNU2;H0YNW9 Q05D32-2 CTDSPL2 CTD small phosphatase-like protein 2 1 KYS(0.596)EVDDS(0.404)LPSGGEKPSKNETGLLSSIK 125.42 0.00021005 250730000.0 190620.0 90780.0 97065.0 88749.0 110700.0 169160.0 163460.0 168710.0 308120.0 183580.0 True False 189593.72309987314 93801.55742233114 110730.90829589545 99984.61430035991 124796.98882969406 157466.36735980812 155552.81532216087 181299.9968920212 232187.95459647093 171863.7672292546 1.1031628490196423 0.5457901856486495 0.6442946647863709 0.5817666859762665 0.7261390276824513 0.9162278349790779 0.9050937136427597 1.0549052881529086 1.3510000294986433 1.0 17.390905898552184 2.097222399904692 1.2176006840907734 1.161114124471222 0.7018997520995652 0.51523042160962 0.17031425981246495 0.35450312663212025 0.9853732043046819 0.11705392973709838 0.05883199243910446 125.08994452098248 -2.097222399904692 -0.45921437237165674 KYSCDR ddPTM_BT-474_Trastuzumab_2h_R1 2 KYSCDR 6 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q03001-3;Q03001-9;Q6P0N6;Q15149-4;Q15149-5;Q15149-8;F6QMI7;E9PHM6;F8W9J4;Q03001-8;Q03001-14;Q03001;A0A494C1D7;E7ETB9 Q15149-3;Q15149-4;Q15149-5;Q15149-8;F6QMI7 PLEC;DST Plectin;Dystonin 0 ; 116.54 0.037659 538280000.0 693380.0 757410.0 717940.0 677350.0 629810.0 534800.0 750570.0 656580.0 914920.0 750070.0 False True 689646.9191217603 782619.9339859862 819019.7115536532 763102.4405497395 710012.570323665 497830.53478378686 714262.0616441587 705577.333645684 689450.2252998927 702199.8904327656 0.9821233647540604 1.1145258560260636 1.166362630801454 1.0867310732267983 1.011126005568136 0.7089584341532352 1.0171776888258401 1.004809803104408 0.9818432538845666 1.0 19.421522245545656 3.0942113761554526 4.662832191530616 0.9462342685422995 1.0937872580021162 0.34223530671990854 0.09373199884443717 0.2479197642555268 9.394753658549359 0.028683108171278945 0.034578033073980344 1242.2567812447433 -3.0942113761554526 0.14755298945981665 KYSSCSTIFLDDSTVSQPNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 KYSSCSTIFLDDSTVSQPNLK 21 1 Q8ND76-3;Q8ND76-2;Q8ND76;R4GNF3 Q8ND76-3 CCNY Cyclin-Y 0 ; 53.278 0.046095 4725700000.0 5978000.0 3036650.0 1904510.0 1478050.0 1584530.0 2772930.0 2405400.0 2331930.0 5758500.0 2809640.0 False True 5945815.112218237 3137723.0595563143 2172648.4537023213 1665170.9784521197 1786310.50325488 2581243.8758751 2289041.6124796625 2505950.4579006066 4339394.8349466985 2630326.369746174 2.260485687482199 1.1929025597911274 0.8259995712668847 0.6330662983897349 0.6791212390222353 0.9813397704423232 0.8702500339152036 0.9527146466400024 1.6497552869705097 1.0 21.326810388918382 4.722272759470457 2.9200836572180084 0.9267385585601344 2.463002127456776 0.6874629809926818 0.2637733858860138 0.2090427410335807 2.620953223550771 0.06574417634325593 0.7417655382054162 52756.10931385604 -4.722272759470457 1.5362635688966417 KYTGEDFDEDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 KYTGEDFDEDLR 12 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 161.21 0.00010582 2250900000.0 5434430.0 6107200.0 5550850.0 5588090.0 5450500.0 6557800.0 6451500.0 5735400.0 8159100.0 6981800.0 False True 5405171.632701939 6310474.460119637 6332361.431146881 6295541.621040224 6144588.867355451 6104474.721400745 6139416.297876674 6163404.671771082 6148399.131338652 6536215.546580297 0.8269573722258727 0.9654630290491619 0.9688115983965566 0.9631783982910429 0.9400835733714837 0.933946360534968 0.9392922026705154 0.9429622734818978 0.9406665198725663 1.0 22.640024129743967 7.999958350577195 0.008974458186939737 1.7858002349531008 2.4186183288062775e-07 0.2663149026980841 0.03673718030198335 26206.49381153287 18.183094705397036 1582.6182805274104 2065.337236354637 99990410.32583043 -7.999958350577195 -1.785799993091268 KYTLENKEEGS(ph)LSDTEADAVSGQLPDPTTNPSAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 KYT(0.011)LENKEEGS(0.33)LS(0.33)DT(0.33)EADAVSGQLPDPTTNPSAGK;KY(0.008)T(0.07)LENKEEGS(0.426)LS(0.426)DT(0.07)EADAVS(0.001)GQLPDPTTNPSAGK;KYTLENKEEGS(0.333)LS(0.333)DT(0.333)EADAVSGQLPDPTTNPSAGK 217.49 9.308399999999997e-37 3638300000.0 1654200.0 1131330.0 1132540.0 1072010.0 1187260.0 1723110.0 1809780.0 1637740.0 2749010.0 1835710.0 True False 1645293.9709988988 1168985.6351465718 1291991.787785849 1207726.3560843382 1338450.52355865 1603995.461464641 1722234.0273690221 1759956.4750752125 2071553.3203467606 1718553.4161695978 0.9573714471244174 0.6802148971034421 0.7517902996960714 0.7027575312591576 0.778823928872609 0.9333404748277829 1.002141691474233 1.0240918079799324 1.2054052558715036 1.0 20.712763263656047 2.416521014514205 1.5095150024883448 1.074953055884209 0.7598681306669847 0.7046634190789005 0.08716177007151779 0.2078040354574776 0.9577896404120382 0.04248710887969471 0.030399228773982233 260.9281977131704 -2.416521014514205 -0.3150849252172244 KYTLENKEEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 KYT(0.007)LENKEEGS(0.169)LS(0.824)DTEADAVSGQLPDPTTNPSAGK 313.22 5.010099999999999e-105 1560100000.0 724060.0 478390.0 508710.0 498280.0 487520.0 783860.0 860000.0 743830.0 1342900.0 770590.0 True False 720161.741410629 494312.921957138 580331.946213414 561362.196910201 549602.7822425697 729673.6032079635 818398.5144809628 799338.3716922079 1011960.2889380779 721410.2864647091 0.9982692996239372 0.6852035952793687 0.804440908456333 0.7781455399827633 0.7618449480889901 1.01145439273364 1.1344425354558598 1.1080218659057213 1.4027527856543562 1.0 19.460460468848435 2.4849321514661926 2.2779019733187216 1.1683382157408302 0.796044606881636 0.6604816520018965 0.12018170359093676 0.17276496832336452 1.812006836280392 0.04487311586117791 0.03757475515469905 305.4443889264552 -2.4849321514661926 -0.37229360885919416 KYVATLGVEVHPLVFHTNR ddPTM_BT-474_Trastuzumab_2h_R1 3 KYVATLGVEVHPLVFHTNR 19 1 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 ;; 123.41 1.2727e-05 3639158000.0 1475307.0 1724863.0 1603545.0 1539988.0 1684380.0 1831027.0 1941214.0 1274907.0 2467807.0 1771608.0 False True 1467364.111034018 1782274.0222532977 1829310.197737001 1734950.3229014727 1898875.808897565 1704452.4132639326 1847310.0626623817 1370047.034186572 1859649.0317696112 1658542.4606900816 0.8847311092798199 1.0746025890176694 1.1029625355360917 1.0460692831340594 1.1449063583861978 1.0276809027576834 1.1138153568246654 0.8260548443339382 1.1212550030198525 1.0 20.66148451665835 -1.3244832375725373 6.285554721128353 0.9999981738941206 1.0321754378270411 0.009984258106505384 0.09927645792674712 2.5538005701122058e-06 2.746793425764596e-07 0.09662859470330706 0.022774285496287683 0.04737145917439009 1.3244832375725373 0.03217726393292053 KYVIS(ph)DEEEEDDD ddPTM_BT-474_Trastuzumab_2h_R1 6 KYVISDEEEEDDD 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD 160.87 4.5685e-05 5252340000.0 6271190.0 5722880.0 4326830.0 5028990.0 5269260.0 6229160.0 6389500.0 6162570.0 7978780.0 6460010.0 True False 6237426.609834707 5913362.601245981 4936010.054519441 5665659.618366037 5940269.027649094 5798552.831065387 6080415.474739661 6622452.26629639 6012516.579174441 6047726.631107193 1.0313671550152035 0.9777827210029475 0.8161761196563503 0.9368246886729387 0.9822317359873083 0.9587987660090073 1.0054051457062112 1.0950316821916235 0.9941779689988557 1.0 22.527961497762227 2.1680230403824785 3.047026357916647 1.0421212682283307 0.9451652675135953 0.271522433718415 0.05806281933866947 0.29355047348363417 5.508026618412781 0.02570903119540644 0.017856461184409575 147.23906142772228 -2.1680230403824785 -0.09695600071473542 LAAAEETAVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 LAAAEETAVSPR 12 0 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR 225.72 1.7847999999999997e-11 11682320000.0 3929630.0 3980630.0 3622720.0 3482660.0 3247490.0 4296650.0 3715350.0 3261270.0 4201270.0 3855300.0 True False 3908473.308702938 4113122.863208352 4132767.486753272 3923564.398914826 3661038.602118732 3999632.698726168 3535624.3264847053 3504642.527793506 3165923.302633765 3609251.453311606 1.082904131026057 1.1396055155521037 1.1450483681211303 1.087085355417625 1.0143484457863443 1.1081612767811937 0.9796004440867246 0.9710164484599383 0.8771689486275408 1.0 21.78326822733029 2.294251006576961 0.9377928550767328 0.9347312899251478 1.1141817589126768 0.6804141638875567 0.04621688693598296 0.3123722787923838 0.5296087074704294 0.033093682789149675 0.01982002150756987 196.90239858850686 -2.294251006576961 0.17945046898752903 LAAAILGGVDQIHIKPGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAAAILGGVDQIHIKPGAK 19 1 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299;M0R2U2;M0R1H0;M0R2B0 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ; 246.45 7.0285e-25 1477800000.0 2436770.0 2533220.0 2326880.0 2190000.0 2306520.0 2806400.0 2620890.0 2713980.0 3772300.0 3010000.0 False True 2423650.7010706 2617536.6963361744 2654484.4783964725 2467253.7754542436 2600241.650184883 2612400.173555011 2494107.5379279195 2916510.9689111975 2842667.2112302575 2817899.223009351 0.8600913337426891 0.9288964896128538 0.9420083077213949 0.8755649440221503 0.9227589223038207 0.9270736697124039 0.8850946540466975 1.0349947738005105 1.0087895223571748 1.0 21.426188586555675 1.7300613613375297 8.172224911541043 1.0150725461771613 0.9085138839960748 0.7841246548220803 0.026067780331139195 0.04780210032659036 9.920426191053842 0.012224691442257955 0.006506348410065897 53.710767879280965 -1.7300613613375297 -0.10655866218108645 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK 36 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ; 294.75 3.171399999999998e-92 479900000.0 123654.0 80138.0 71339.0 63436.0 73735.0 107140.0 92909.0 96317.0 160585.0 100940.0 False True 122988.26060325086 82805.34488555611 81382.91111029619 71466.99109576043 83124.7151884147 99733.66398043183 88414.63672315326 103504.66362781587 121010.9784787558 94497.92278091823 1.3014916834561958 0.8762662971706805 0.8612137570364633 0.7562810799709092 0.8796459513838107 1.0554058866632656 0.9356251875306475 1.09531152200857 1.280567603155731 1.0 16.527994996432312 1.6408137370046998 3.75985581424802 1.1535957109324895 0.9390150544966449 0.210861295103826 0.15236806071714806 0.2490761539366367 8.274200381649239 0.08978260177445455 0.04017358754577432 43.73344981131757 -1.6408137370046998 -0.21458065643584456 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_BT-474_Trastuzumab_2h_R1 5 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 37 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ;;;; 377.12 8.020999999999994e-162 35513730000.0 12964234.0 7158405.0 6313208.6 6405576.0 7211907.0 11367608.0 10718308.0 9948660.0 19683395.0 9684273.0 False True 12894436.004605794 7396668.183077804 7202053.495487132 7216521.264821496 8130300.608128222 10581792.015430901 10199822.494127227 10691079.527471868 14832686.04623003 9066214.406016743 1.4222513859862473 0.815849686741254 0.7943837607356307 0.7959795501893593 0.8967690641347058 1.1671676337599466 1.1250365408696017 1.1792220047627369 1.6360396282252492 1.0 23.112068849105263 2.3191040575459327 1.4398305018928166 1.2773941745619262 0.9247705458248758 0.26151988070948995 0.23021465645930936 0.5261764760077154 2.1744596026891436 0.12590836142536618 0.08055197608481876 208.49903897742914 -2.3191040575459327 -0.35262362873705033 LAAELEDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAAELEDRR 9 1 Q9NQG5;A2A2M0;A0A087X2D2 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 0 ; 167.12 0.0011642000000000002 0.0 263060.0 370900.0 312110.0 349160.0 314920.0 324730.0 332110.0 292290.0 379280.0 337900.0 False True 261643.71418871358 383245.1822862152 356052.3750912476 393363.6201998186 355023.1953229208 302282.17943219724 316044.57051659643 314102.1640185458 285811.52609161823 316334.9327092554 0.8271097723791109 1.211517106264256 1.125555031313904 1.2435035765125584 1.1223015816884945 0.9555763470170584 0.9990821051909375 0.992941757422783 0.9035092129844182 1.0 18.271093355185048 2.742777474475487 23.779507128798556 0.9741280970655426 1.1205853970449127 0.2783839334099153 0.10793991306862581 227.04302856473262 1280332.1159183746 0.03260158743114443 0.0334513336940326 553.0666541230928 -2.742777474475487 0.14645729997937007 LAAFADALEFADEEKES(ph)PVEFTGHK ddPTM_BT-474_Trastuzumab_2h_R1 3 LAAFADALEFADEEKESPVEFTGHK 25 1 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 1 LAAFADALEFADEEKES(0.999)PVEFT(0.001)GHK;LAAFADALEFADEEKES(1)PVEFTGHK;LAAFADALEFADEEKES(0.999)PVEFT(0.001)GHK 283.8 1.1143999999999996e-53 943300000.0 737230.0 492206.0 482421.0 404908.0 462191.0 639310.0 603020.0 627190.0 951330.0 632640.0 True False 733260.8355939527 508588.77916518936 550341.6835214987 456169.31128384714 521048.2842293156 595116.0044738641 573849.6188398957 673994.1026062878 716887.4686688966 592264.3735696465 1.238063385738541 0.8587191832928688 0.9292162555794554 0.7702123099764746 0.8797562498802634 1.004814793918855 0.9689078804136692 1.137995349178352 1.2104180171232184 1.0 19.175881780863094 1.8604290404027997 2.6028028610724245 1.1327686690347523 0.9316240349305043 0.2607823614555548 0.12554335784478937 0.3276445867719425 4.032081032486897 0.07043918392615861 0.03509981476934189 72.51519854579723 -1.8604290404027997 -0.201144634104248 LAAFGQLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAAFGQLHK 9 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ; 137.9 0.00015158 1294170000.0 1245790.0 1545340.0 1655880.0 1139700.0 865410.0 1264720.0 1375480.0 963360.0 2571000.0 1412590.0 False True 1239082.8050602796 1596775.707722243 1889013.5108330252 1283985.9031439272 975614.8338130602 1177292.883230649 1308942.777556134 1035250.8150429588 1937411.499634966 1322437.2968208552 0.9369690404520803 1.2074490878024224 1.4284333294094333 0.9709238435959381 0.7377399564867403 0.8902447670380031 0.9897957209032426 0.7828354641325574 1.4650308973382038 1.0 20.334767888101904 3.5147437329681708 24.07355942298796 0.9432346303299541 1.193780215102353 0.1598673884937757 0.216708644792949 540.8082108739666 346046.0113587423 0.056387274886977576 0.08732420867719876 3271.4759575631842 -3.5147437329681708 0.25054558477239897 LAALNPESNTAGLDIFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LAALNPESNTAGLDIFAK 18 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 173.03 6.0817e-14 0.0 53894.0 52534.0 64441.0 42511.0 41726.0 56762.0 60520.0 53668.0 68669.0 53083.0 False True 53603.840692186335 54282.562432526414 73513.73266878683 47892.88824124898 47039.558770621654 52838.176543375615 57592.416391148705 57672.97868058209 51746.445067457644 49695.19749335725 1.0786523325388042 1.092310025325533 1.4792924945838761 0.9637327278486179 0.9465614615357837 1.063245126461938 1.1589131203039706 1.1605342485718309 1.0412765755559092 1.0 15.600818817105791 1.371208496063101 0.01468699080169055 7.784413700703596e-07 2.1707555791121695 0.06682459158126552 0.13945396535941004 1575.197692170773 22.12017479225528 1642.1236632571024 1621.711779429426 23.507611032122384 -1.371208496063101 2.1707548006707995 LAAPSVSHVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAAPSVSHVSPR 12 0 A0A0U1RRM7;Q8WXE1-3;A0A0U1RQW3;A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-2;Q8WXE1 A0A0U1RRM7 ATRIP ATR-interacting protein 1 LAAPSVS(0.001)HVS(0.999)PR 152.07 4.4761e-05 296130000.0 200420.0 241100.0 233870.0 216770.0 202260.0 260450.0 287740.0 231250.0 301630.0 302570.0 True False 199340.9609887552 249124.86775197246 266796.863165519 244213.05977407136 228016.61211105628 242445.7045333531 273820.9169264559 248507.04926370658 227297.32813492627 283259.72355679044 0.7037391637812198 0.8794927306423982 0.9418806875027865 0.8621524327835098 0.8049736448512119 0.8559130874275015 0.9666779077808351 0.8773116281527531 0.8024343358132088 1.0 18.111765955235946 LAAQES(ph)SETEDMSVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAAQESSETEDMSVPR 16 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 LAAQES(0.896)S(0.103)ET(0.001)EDMSVPR 230.87 1.9518e-15 99450000.0 55724.0 62672.0 44722.0 64240.0 42047.0 51106.0 47545.0 45471.0 68186.0 67931.0 True False 55423.98817551839 64757.99963397599 51018.46886940753 72372.77741332444 47401.43621790564 47573.16251058373 45245.06671046207 48864.27691705949 51382.47394558931 63595.585421344964 0.8715068476579525 1.0182782217496638 0.802232867759464 1.138015743291413 0.7453573373663137 0.7480576237390287 0.7114498028549667 0.7683595739124823 0.8079566153084503 1.0 15.956639001792084 3.1881604144701248 24.999986084929716 0.7763486248202558 0.9507595729637957 0.3214597769397549 0.11181259359262423 104.75078844259352 51959.04266662832 0.029673931510973736 0.035467181678358 1542.2700128946526 -3.1881604144701248 0.17441094814353986 LAAQESS(ph)ETEDMSVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAAQESSETEDMSVPR 16 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 LAAQES(0.072)S(0.766)ET(0.162)EDMSVPR 167.95 8.7572e-10 0.0 152350.0 155370.0 137850.0 123000.0 147890.0 156290.0 152020.0 110790.0 159230.0 157610.0 True False 151529.7645276761 160541.3965268516 157258.0817863205 138571.78738852605 166722.9148872943 145486.0401670869 144666.21182720453 119057.71238022087 119989.90007268608 147551.19486329023 1.0269639948905336 1.0880386070448098 1.0657865694142559 0.9391437833961032 1.1299326653489123 0.9860038090635813 0.9804475793045342 0.8068908726258078 0.8132085964051978 1.0 17.170856078137017 2.010360505581793 2.6660214030874902 0.8557521232638039 1.0432214138362872 0.5136329928733547 0.07094177961118377 0.18949467455014266 2.5677918116634784 0.034022613822437826 0.01948503699423046 102.41427751019467 -2.010360505581793 0.1874692905724833 LAAQLGAPTS(ph)PIPDSAIVNTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAAQLGAPTSPIPDSAIVNTR 21 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 LAAQLGAPT(0.233)S(0.767)PIPDSAIVNTR;LAAQLGAPT(0.105)S(0.895)PIPDSAIVNTR 193.71 6.5999e-18 417750000.0 490100.0 548590.0 491030.0 514310.0 471370.0 502740.0 493130.0 425850.0 513460.0 555660.0 True False 487461.3560552291 566849.4865203418 560162.7558907295 579421.5932666076 531396.1754711196 467986.76712266414 469275.41796046187 457629.0894224846 386924.66301150183 520197.3030755398 0.9370701331460825 1.0896817095532452 1.0768274894523744 1.113849667887393 1.0215281246737904 0.8996332052392552 0.9021104399926437 0.879722149109317 0.7438036697305119 1.0 18.988699394191322 2.7531119260242765 2.859574682972657 0.8753939830862917 1.0597374287827261 0.5584078227840104 0.07273896145963284 0.18779273296521687 3.0895329568236716 0.02382111652554488 0.024006132352457858 566.3852385782025 -2.7531119260242765 0.18434344569643446 LAASGEGGLQELSGHFENQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LAASGEGGLQELSGHFENQK 20 0 Q16643;Q16643-3;Q16643-2;D6RFI1 Q16643 DBN1 Drebrin 0 ;;; 402.93 3.249099999999998e-151 2094650000.0 2066410.0 2055520.0 2043690.0 1984000.0 1976400.0 2467540.0 2359350.0 2342030.0 3042190.0 2604570.0 False True 2055284.6781597347 2123936.74061192 2331423.7879280793 2235174.1965758963 2228082.824959419 2296964.767764366 2245219.226907746 2516804.1711873687 2292483.0377574884 2438344.1127154334 0.8429018149825009 0.8710570134609191 0.95615043658941 0.9166770944756935 0.9137688209553576 0.94201829667363 0.9207967059281816 1.0321775987494066 0.9401802747211474 1.0 21.217470310817795 7.999999999999252 0.20017911595215016 1.006793022940744 0.25028674805841616 0.6167150859913333 0.032601692861868974 33.81176747832143 0.4084968217520224 0.0609779224938735 8.03451279838209 99999999.9998278 -7.999999999999252 -0.7565062748823279 LAASTEPQGPRPVLGR ddPTM_BT-474_Trastuzumab_2h_R1 6 LAASTEPQGPRPVLGR 16 1 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;F5GWK5;F5H3G8;F5H5A8;F5GY07 Q9Y365 STARD10 PCTP-like protein 0 ;;;;; 214.53 1.545e-14 8094400000.0 2351430.0 2694170.0 2712660.0 2963690.0 2540340.0 2872420.0 2782020.0 2565810.0 3429150.0 3004010.0 False True 2338770.162148433 2783843.8197898422 3094578.949136601 3338892.8501260187 2863837.2412251597 2673856.366349375 2647443.064251548 2757283.771119185 2584081.9307558327 2812291.509937644 0.8316243724678064 0.9898845158664108 1.1003763081463827 1.187249912865559 1.0183287298295256 0.9507749665711793 0.941382874035789 0.9804402429036673 0.9188528008652733 1.0 21.423314714994916 2.812168131858475 5.262801173550648 0.9577035669603083 1.037718203831246 0.12482061091105989 0.08680385201564189 0.44794033000902495 22.870356514502603 0.028688114093767432 0.030354234804704446 648.8855931413965 -2.812168131858475 0.08001463687093768 LACDVDQVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LACDVDQVTR 10 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 133.23 0.00047165 180037000.0 111712.0 140852.0 122270.0 116591.0 124914.0 143549.0 134004.0 116829.0 133736.0 135431.0 False True 111110.55500436996 145540.17367316812 139484.55321010834 131351.40864565535 140821.05747671577 133625.79550799888 127521.7145750081 125547.37322564138 100778.55477058815 126787.67763168752 0.8763513701003429 1.1479047206460848 1.1001428199931595 1.0359950674956384 1.110684098858523 1.0539336156639432 1.0057894975050565 0.9902174688485961 0.7948607991964748 1.0 16.952055012630904 1.5922447308298937 2.508047341495006 0.8980178141283909 1.0575700364523923 0.3196714205785951 0.08432444756547243 0.2538889496528862 3.585199547429054 0.056846002134132795 0.02152932150865984 39.106120200419994 -1.5922447308298937 0.15955222232400146 LADALQELR ddPTM_BT-474_Trastuzumab_2h_R1 6 LADALQELR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;; 209.19 2.0504e-05 3379150000.0 2132000.0 2676220.0 2691420.0 2434150.0 1881330.0 2188180.0 2457340.0 1994900.0 2985210.0 2381390.0 False True 2120521.548887466 2765296.364890846 3070348.541757992 2742313.140420975 2120906.2239834564 2036916.2670216656 2338469.076249591 2143769.567896942 2249544.995264605 2229407.651389449 0.9511591778945762 1.2403726896547662 1.3772037338458212 1.2300635725870344 0.9513317237704956 0.9136580587907216 1.0489194628861038 0.9615870684577879 1.0090325983507797 1.0 21.088229009549284 3.24050540477604 24.986063213485743 0.9792996061712378 1.2152838902712981 0.5127493343220046 0.10411149721084459 39.80500409353996 511396.3778886569 0.029938187813910486 0.038578044432083 1739.8243499423304 -3.24050540477604 0.23598428410006034 LADAMAES(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LADAMAESPSR 11 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 K7ESE9;Q9H6U6-7 BCAS3 Breast carcinoma-amplified sequence 3 1 LADAMAES(0.96)PS(0.04)R;LADAMAES(0.968)PS(0.032)R 104.41 0.0019632 0.0 481650.0 481250.0 463340.0 462700.0 469840.0 509930.0 517090.0 468060.0 542790.0 505720.0 True False 479056.8499163461 497268.11532823206 528574.2445765234 521277.7725583005 529671.3390401407 474679.7393461042 492076.38122437306 502989.01396052144 409026.67751336616 473444.51663132524 1.0118542576539993 1.0503197267262014 1.116443904213866 1.1010324425495952 1.1187611651073355 1.0026090126115894 1.039353850215899 1.0624032939264194 0.8639379338970743 1.0 18.852835839368147 1.2590391776583343 24.88947015719306 0.9319690179383436 1.064066748664699 0.5365392534423752 0.04864507006041035 143.18252849057473 174023.73789951677 0.032388073163792205 0.011795961495115104 18.156794476325018 -1.2590391776583343 0.13209773072635544 LADAMAES(ph)PSRDVVGSGTDTALDVAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LADAMAESPSRDVVGSGTDTALDVAVK 27 1 Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 Q9H6U6-7 BCAS3 Breast carcinoma-amplified sequence 3 1 LADAMAES(0.903)PS(0.097)RDVVGSGTDTALDVAVK 261.29 2.6994e-53 228290000.0 118280.0 113000.0 115010.0 105980.0 134070.0 139790.0 117610.0 127230.0 180780.0 143750.0 True False 117643.19362214353 116761.13669005738 131202.40831515944 119397.05713362577 151143.01980485203 130126.64633026446 111920.75498617 136724.54866084937 136229.19132789172 134575.75192943323 0.874178237427434 0.8676238848086303 0.9749334960725863 0.8872107747630001 1.1231073773535822 0.9669397678602477 0.8316561741736155 1.015967190973177 1.0122863099388477 1.0 17.038058960740347 4.188976188598762 1.661851283017242 0.9775070662243993 0.8599837439029325 0.23589356981983522 0.07406842858760135 0.6686196877896757 3.3212894254249825 0.02078764278989116 0.09062348410186521 15451.697189943096 -4.188976188598762 -0.11752332232146678 LADAMAES(ph)PSRDVVGSGTELQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LADAMAESPSRDVVGSGTELQR 22 1 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 LADAMAES(0.5)PS(0.5)RDVVGSGTELQR;LADAMAES(0.984)PS(0.016)RDVVGSGTELQR;LADAMAES(0.932)PS(0.068)RDVVGSGTELQR;LADAMAES(0.99)PS(0.01)RDVVGSGTELQR 318.41 1.0712999999999994e-67 1992270000.0 744410.0 844160.0 810750.0 841740.0 879410.0 933070.0 884460.0 838420.0 1015180.0 922540.0 True False 740402.1792717268 872257.3552945032 924896.5528346717 948304.1976944535 991397.650828557 868569.0671105228 841675.29083469 900987.1578104945 765002.4917150622 863662.7073737702 0.8572816366277356 1.0099513940423197 1.0709001846879573 1.0980029467499663 1.1478991073299945 1.0056808748309531 0.9745416626753056 1.0432164664724506 0.8857653400843085 1.0 19.720108470382716 -0.787604323169862 7.506160810568397 1.0000107693009677 1.018944639120507 0.0 0.08501061909827924 0.0 0.0 0.08262900855134188 0.019475844089791694 0.1630781127386729 0.787604323169862 0.018933869819539373 LADAMAESPS(ph)RDVVGSGTDTALDVAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LADAMAESPSRDVVGSGTDTALDVAVK 27 1 Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 Q9H6U6-7 BCAS3 Breast carcinoma-amplified sequence 3 1 LADAMAES(0.247)PS(0.753)RDVVGSGTDTALDVAVK 112.13 0.00072243 185370000.0 64074.0 70226.0 66874.0 59791.0 63439.0 78548.0 84413.0 78019.0 90068.0 81672.0 True False 63729.03270329062 72563.42995748656 76289.27792077186 67360.53446949065 71517.58061758777 73118.1616421034 80329.62070102505 83841.17395245463 67871.94824936696 76459.62303708287 0.8334991747524321 0.9490424759522205 0.9977720905551889 0.8809948544582915 0.9353640232165646 0.9562976998544858 1.0506149194858734 1.09654181674152 0.8876835322147627 1.0 16.222410466932686 2.406617640023389 4.081603060055404 1.026095685799379 0.9247165988802009 0.2804652234606234 0.06464633121449888 0.2510337781985381 8.292584858409274 0.023351834628873344 0.019440757807082314 255.04548516664983 -2.406617640023389 -0.10137908691917819 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR ddPTM_BT-474_Trastuzumab_2h_R1 18 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR 35 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;;;;;;;;;;; 310.88 6.535899999999998e-105 37820575000.0 7923016.0 8922973.0 7734137.0 8394976.0 8497010.3 8576793.0 8301541.0 4148623.9 9533361.0 8303228.0 False True 7880359.362185837 9219968.762253914 8823036.263276089 9457779.100843716 9579054.1959792 7983899.487509048 7899963.7468637405 4458215.281703314 7183991.922042596 7773308.8802888645 1.0137715461389196 1.1861060591112507 1.1350425409762201 1.2166992520812134 1.232300728492759 1.0270915012465525 1.0162935589625213 0.5735286414525755 0.9241871167964744 1.0 22.890097413648668 2.0899691577225203 2.857009816915391 0.7884628277286617 1.149460506753358 0.5102144940140085 0.12752675108146197 0.16869076266088248 2.723081201122014 0.05627718131370345 0.03581892700157176 123.01814039563135 -2.0899691577225203 0.36099767902469637 LADELHMPSLPEMMFGDNVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LADELHMPSLPEMMFGDNVLR 21 0 O75663;O75663-2 O75663 TIPRL TIP41-like protein 0 ; 224.56 3.1325e-25 458480000.0 310780.0 382240.0 353460.0 340150.0 349380.0 342330.0 371430.0 311450.0 385150.0 348460.0 False True 309106.7950109037 394962.62733104016 403224.0956706052 383212.9551236348 393871.47206249804 318665.53285814036 353462.51189960924 334691.9805110548 290234.9432455885 326220.9844683848 0.9475380485244665 1.2107210943976454 1.2360458550136066 1.174703570183031 1.2073762596981845 0.9768394678148711 1.0835063614182199 1.0259670482463734 0.889688147188202 1.0 18.315490062172525 2.7355193177953074 24.9764258277008 1.0065655648811214 1.1639236131115622 0.44983607427847383 0.08780778053621738 254.5767600971094 2090679.8202765665 0.027849578273987197 0.027315722547025172 543.9003243406122 -2.7355193177953074 0.15735804823044086 LADFGLARAFGIPVRCYS(ph)AEVVTLWYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LADFGLARAFGIPVRCYSAEVVTLWYR 27 2 Q00535;Q00535-2 Q00535 CDK5 Cyclin-dependent-like kinase 5 1 LADFGLARAFGIPVRCY(0.48)S(0.52)AEVVTLWYR 41.76300000000001 0.090705 29961000.0 11999.0 21076.0 16962.0 19254.0 20844.0 19271.0 16186.0 14588.0 9654.7 16025.0 True False 11934.398717214228 21777.501919288967 19350.10216365302 21691.554425842918 23498.359847932676 17938.841129054515 15403.02134347542 15676.630636363043 7275.4285513518935 15002.270780307244 0.7955061531671549 1.451613708231106 1.2898115523319953 1.4458847426161894 1.5663202052570493 1.195741724152984 1.02671266030568 1.0449505188868473 0.48495515498240416 1.0 13.872893266639988 1.8588170828716262 1.5116120073558215 0.7842597475079981 1.3190399473757777 0.43014432262348556 0.2370667628205065 0.3510036019024436 1.5078728580543264 0.16824911184588828 0.07212656132292593 72.24654498865459 -1.8588170828716262 0.5347801998677796 LADFGVLHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LADFGVLHR 9 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;;; 157.68 6.797e-05 2062880000.0 2897410.0 3434970.0 2929740.0 2511260.0 3094790.0 2597660.0 2222690.0 2772360.0 3026370.0 2670790.0 False True 2881810.666492511 3549300.899966787 3342221.9262434123 2829185.2585147093 3488893.162242545 2418089.878433901 2115169.9931996437 2979247.5809588274 2280561.6647803495 2500337.8956216425 1.1525684874587823 1.4195284990008712 1.3367081033711476 1.1315211689863651 1.3953686693114429 0.9671052391231735 0.8459536596647722 1.1915379861961084 0.9121013878859555 1.0 21.2536916431704 2.7293913926586737 24.829182263305153 0.9998816682884231 1.2886023651408964 0.6155619019480053 0.11968302319329077 425.69527527791234 1152730.6276956394 0.03824916484907588 0.036527801716200826 536.2797430944623 -2.7293913926586737 0.28872069685247337 LADHFGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 LADHFGGK 8 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9NQ29-3;Q9NQ29;Q9NQ29-2;A8MYV2;B8ZZ10 Q9Y383;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 ;;;;; 106.36 0.004211199999999999 5641390000.0 11330080.0 12152130.0 10909470.0 10712360.0 10568960.0 12313080.0 12286370.0 11342660.0 15429800.0 12504560.0 False True 11269080.108170234 12556606.300932283 12445428.54918687 12068543.677636985 11914854.408866156 11461905.761472588 11692031.344608692 12189106.88606043 11627332.53872721 11706508.275107576 0.9626337626337754 1.0726175564777358 1.0631204674113217 1.0309259938165536 1.017797461793249 0.9791054251287633 0.9987633434190051 1.041224812694921 0.9932366052695045 1.0 23.480807488523443 3.1904324070398604 3.5540729727067792 1.0070779615896641 1.0378685089111837 0.15125901839175282 0.03133487643191692 0.4275665621683642 11.07975148241304 0.009366680872769234 0.011862818484421047 1550.359472327334 -3.1904324070398604 0.030790547321519535 LADILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 LADILSPR 8 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR 138.22 0.0007497000000000001 1641607000.0 1942422.0 2250430.0 2002864.0 1948634.0 2108400.0 2239690.0 2075585.0 1864351.0 2490270.0 1953813.0 True False 1931964.2157753718 2325334.2021363387 2284849.84199403 2195330.8646020554 2376892.2425341215 2084865.5019631602 1975181.024045314 2003478.3386025517 1876576.3264083925 1829118.9815965346 1.0562266507611602 1.2712864638836594 1.2491532070809923 1.2002121713732778 1.299473826716 1.1398195103433888 1.079853767807543 1.095324229183729 1.0259454662541607 1.0 20.802717492730228 2.3983076680288224 2.9973858453261264 1.0612785918485763 1.2198282775698406 0.57361583846098 0.06640466300771525 0.1896015653329267 3.465002505308269 0.02429039267779498 0.019821276760110952 250.21173134829422 -2.3983076680288224 0.15854968572126427 LADINYEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LADINYEGR 9 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 76.827 0.07986900000000001 129670000.0 164390.0 215410.0 224920.0 221110.0 219430.0 251550.0 224130.0 221140.0 244430.0 260060.0 False True 163504.9425054459 222579.79163190522 256586.78096031342 249102.50332908105 247373.10983649333 234160.94058500638 213287.97564025383 237642.58972616686 184193.50169419503 243462.74815143246 0.6715809451216198 0.9142252493324434 1.0539057120998152 1.0231647560888482 1.0160614373851915 0.9617937132598191 0.8760600020319738 0.9760942547906939 0.7565572273078414 1.0 17.893341519152838 4.716990679931183 3.9216380361449112 0.9594101344605777 0.6502248006705139 0.5223901361754224 0.08154899042882775 0.17201408121973755 5.3473572095023005 0.019682601518639996 0.1463480485397814 52118.3526255503 -4.716990679931183 -0.30918533379006374 LADKYEEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LADKYEEAK 9 1 Q99567;J3KMX1;I3L4K7 Q99567 NUP88 Nuclear pore complex protein Nup88 0 ; 86.014 0.013156 722330000.0 660940.0 572900.0 480780.0 425530.0 441990.0 631340.0 686540.0 634060.0 1006810.0 661190.0 False True 657381.572477337 591968.630174637 548469.6449853267 479402.05436942674 498274.806620023 587696.9518145018 653329.4373625114 681376.7768914417 758695.166062809 618992.2881267618 1.0620190026385492 0.9563424965537038 0.8860686239648385 0.7744879274994315 0.8049774063065267 0.9494414762307166 1.0554726607978642 1.10078395153108 1.2256940524393702 1.0 19.239561909804326 2.203926116430562 2.463244650019284 1.114505237353353 0.891822890623739 0.526463333040091 0.08996991044078563 0.23099280322038393 2.8477354435073043 0.04284520868321026 0.029006081172361833 159.92859298211056 -2.203926116430562 -0.22268234672961407 LADLIER ddPTM_BT-474_Trastuzumab_2h_R1 4 LADLIER 7 0 P05091;F8VP50;Q5SYQ7;Q5SYQ9;Q5SYQ8;P00352 P05091 ALDH2;ALDH1A1 Aldehyde dehydrogenase, mitochondrial;Retinal dehydrogenase 1 0 ;;; 129.39 0.008526100000000002 574341000.0 591567.0 712450.0 670246.0 646256.0 776290.0 1131390.0 636620.0 576167.0 829850.0 747280.0 False True 588382.0690012724 736163.4675648811 764610.8109173316 728071.9433378796 875145.9300686833 1053179.6723055886 605824.2584754304 619163.5072567435 625344.5869202954 699587.9506214043 0.8410408848217669 1.0522815135838015 1.0929445114630278 1.0407153849507764 1.2509448301551518 1.5054285474329694 0.8659729744306074 0.885040267927393 0.8938755825694785 1.0 19.41614591559968 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER ddPTM_BT-474_Trastuzumab_2h_R1 11 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER 32 0 P68363;F8VQQ4;Q9BQE3;F5H5D3 P68363;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain 0 ;;;;;;;;;; 432.0 5.432099999999995e-208 6700195000.0 593949.8 693586.4 648356.8 629109.7999999999 685975.5000000001 713829.0 740416.9 676119.7 710140.2999999999 716259.9 False True 590752.0402708269 716672.004042168 739639.8018216698 708755.0361759182 773330.4138296642 664483.6814027223 704600.1058797664 726575.1852802702 535135.7384574978 670547.5799610486 0.8809994367665052 1.068786206168694 1.1030385075204279 1.0569794856572132 1.1532819399252567 0.9909567959984606 1.0507831613092928 1.0835550033936088 0.7980578178935241 1.0 19.354980179330816 1.2559342918165548 24.996129319153987 0.8990288553110255 1.0543653851782897 0.3439828485462585 0.08227999786572077 206.86190214816395 297621.686862947 0.0519777042782158 0.01888449401033554 18.027449672843716 -1.2559342918165548 0.1553365298672642 LADS(ph)PPPQVWQLISK ddPTM_BT-474_Trastuzumab_2h_R1 2 LADSPPPQVWQLISK 15 0 Q5HY81;P11441 Q5HY81 UBL4A Ubiquitin-like protein 4A 1 LADS(1)PPPQVWQLISK;LADS(1)PPPQVWQLISK 164.01 1.5797e-06 226890000.0 458510.0 441110.0 385770.0 357110.0 366890.0 524990.0 502710.0 477100.0 589830.0 525280.0 True False 456041.4331052501 455792.0796933739 440083.06282705016 402320.0893846872 413611.266772597 488698.6769935302 478391.99676130764 512703.62466471153 444474.2998170722 491756.18068516656 0.9273730580667946 0.9268659909028826 0.8949212640578915 0.8181291973272861 0.8410901235573901 0.9937824804003961 0.9728235567771847 1.0425972154541276 0.9038509677657407 1.0 18.907583659706866 2.7264130904101638 24.599107197759395 0.9891606212441748 0.8813919646983455 0.5515904774710437 0.04531067026786327 466.7163035243609 945112.6523018754 0.015420101144999285 0.014638576445041912 532.6146285618355 -2.7264130904101638 -0.10776865654582934 LADVAAPPGGPPPPHS(ph)PY(ph)S(ph)GPPSRGSPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 3 LADVAAPPGGPPPPHS(0.939)PY(0.559)S(0.581)GPPS(0.492)RGS(0.429)PVR;LADVAAPPGGPPPPHS(0.974)PY(0.64)S(0.473)GPPS(0.475)RGS(0.437)PVR;LADVAAPPGGPPPPHS(0.954)PY(0.553)S(0.57)GPPS(0.492)RGS(0.431)PVR 84.404 0.0021438000000000004 322986000.0 338450.0 473370.0 444830.0 457690.0 454160.0 404500.0 363290.0 383690.0 404710.0 377660.0 True False 336627.8228053301 489125.83429179195 507458.1974683278 515633.50707198685 511994.58398278186 376537.8670905789 345716.2747974294 412322.8961383422 304974.64333616005 353557.41546900675 0.9521164260090007 1.3834410279386977 1.4352921909307603 1.4584151951331024 1.448122883531102 1.0649977927660992 0.9778221575096203 1.1662119873553802 0.8625887338032497 1.0 18.431584992968702 2.669864269383469 6.386585844416809 1.0308834835877811 1.350129634364321 0.516699080273749 0.1546843280258749 0.20243582776810323 15.258096341414136 0.05084553540756565 0.04799377014028922 467.5889822589328 -2.669864269383469 0.31924615077653984 LADVAAPPGGPPPPHS(ph)PYS(ph)GPPSRGSPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LADVAAPPGGPPPPHS(0.523)PY(0.47)S(0.358)GPPS(0.359)RGS(0.29)PVR;LADVAAPPGGPPPPHS(0.494)PY(0.452)S(0.369)GPPS(0.343)RGS(0.343)PVR 69.619 0.010949 1166940000.0 169672.0 169715.0 186435.0 138304.0 161757.0 142232.0 210691.0 168434.0 234461.0 184113.0 True False 168758.50480433129 175363.8611801159 212683.42747792992 155813.2722193713 182355.7951411459 132399.83661811415 200499.07141221917 181003.40037052156 176681.2281664389 172362.7507129302 0.9790891831692697 1.0174115953404808 1.2339291790031461 0.9039845997751451 1.057976821481917 0.7681464589679576 1.1632389862827726 1.0501306089735267 1.0250545865370941 1.0 17.395088501948994 -0.47633426066990214 6.560747298104565 0.9999988942109944 1.0263477353487158 0.0018829680190447506 0.12138814940465743 0.0 5.854235881112079e-18 0.11185779239964838 0.026365134532715336 0.3339379212167694 0.47633426066990214 0.0263488411377214 LADVAAPPGGPPPPHS(ph)PYSGPPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 LADVAAPPGGPPPPHSPYSGPPSR 24 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LADVAAPPGGPPPPHS(0.988)PYS(0.012)GPPSR;LADVAAPPGGPPPPHS(0.999)PYS(0.001)GPPSR;LADVAAPPGGPPPPHS(0.99)PYS(0.01)GPPSR;LADVAAPPGGPPPPHS(1)PYSGPPSR;LADVAAPPGGPPPPHS(0.996)PYS(0.004)GPPSR 246.83 4.1917e-38 5410140000.0 2370600.0 3338740.0 3299780.0 3408240.0 3167630.0 3151050.0 3100150.0 2812980.0 2930290.0 2973550.0 True False 2357836.9529984207 3449867.9425890488 3764360.341798081 3839722.834545281 3571008.9044860364 2933225.3302738387 2950183.900776928 3022898.85162301 2208159.29337431 2783775.4932157625 0.8469924958907853 1.2392766410210148 1.352249975248387 1.3793220192874494 1.282793426836615 1.0536860236834094 1.059777955502056 1.0858989379675215 0.793224632789438 1.0 21.408611434287863 2.618480856389054 4.074715328194128 1.0093662502128407 1.2369270705276425 0.33410160828182345 0.15604643996994874 0.2967392643866815 8.417862553841221 0.05409426584689587 0.0506258512053873 415.4137394865498 -2.618480856389054 0.22756082031480185 LADVAAPPGGPPPPHS(ph)PYSGPPSRGSPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LADVAAPPGGPPPPHS(0.337)PYS(0.302)GPPS(0.199)RGS(0.162)PVR 96.024 0.00067483 3694100000.0 296480.0 417580.0 451990.0 489620.0 465750.0 533700.0 438980.0 388730.0 657340.0 527750.0 True False 294883.7846220249 431478.8978675593 515626.2632324926 551605.84179813 525060.5017834697 496806.57519466453 417744.86033355043 417739.0065309437 495347.3649047259 494068.54317049327 0.5968479246416349 0.8733178904665956 1.043633055291602 1.116456105985646 1.0627280547231313 1.0055418060146089 0.845520052041433 0.8455082038825333 1.0025883488271208 1.0 18.914351678255766 4.6757484006402406 2.987802973809015 0.9773000324404677 0.5602365160972781 0.6709479317449241 0.08288924641950561 0.2324712545598859 3.2207965015274764 0.024725324899853584 0.21278200000257003 47396.73227235613 -4.6757484006402406 -0.4170635163431896 LADVAAPPGGPPPPHSPYS(ph)GPPSRGS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LADVAAPPGGPPPPHS(0.03)PY(0.306)S(0.571)GPPS(0.368)RGS(0.725)PVR 71.709 0.0041646 845680000.0 206060.0 253490.0 190520.0 229730.0 234860.0 209700.0 211650.0 201060.0 239970.0 197270.0 True False 204950.59585541842 261927.2614120588 217343.55997047364 258813.79444525245 264768.0288757183 195203.93258070335 201411.6809184834 216064.11816199296 180832.60893325706 184680.0597086562 1.109760285862698 1.4182758107467839 1.176865333016169 1.4014171040097487 1.43365791246443 1.0569843484383166 1.090597876328513 1.1699374502198396 0.9791669399421425 1.0 17.494668578372554 2.722731299824831 24.800992536375126 1.080599999544022 1.3120270886801106 0.5619337130297575 0.10893936903013723 570.5688618893791 893952.138363548 0.03413379573166277 0.03228284881450213 528.118401168741 -2.722731299824831 0.23142708913608856 LADVAAPPGGPPPPHSPYS(ph)GPPSRGSPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LADVAAPPGGPPPPHS(0.097)PY(0.002)S(0.3)GPPS(0.3)RGS(0.3)PVR 72.113 0.0043114 562260000.0 59895.0 91046.0 86809.0 102880.0 117090.0 90304.0 88342.0 94622.0 110730.0 108590.0 True False 59572.5319749601 94076.41107153078 99030.95264264559 115904.59745147603 132000.71745319685 84061.49703275059 84068.55996078759 101683.17412078037 83442.07520598202 101659.69323142365 0.5859995252921524 0.9254052228681245 0.9741417615456123 1.140123423229544 1.2984567753190366 0.8268911144694134 0.8269605906581811 1.000230975410316 0.8207980228312312 1.0 16.63338825686176 4.753233063719101 2.785249722432816 0.9883103815385293 0.5030356266153813 0.41597898610894213 0.1413780972914647 0.4823835209477882 4.988880588892208 0.03704822144522573 0.5434728022855786 56654.32423629742 -4.753233063719101 -0.4852747549231481 LADVAAPPGGPPPPHSPYSGPPS(ph)RGS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LADVAAPPGGPPPPHS(0.006)PY(0.083)S(0.045)GPPS(0.912)RGS(0.955)PVR 115.13 0.0001146 717260000.0 243470.0 313700.0 281710.0 285900.0 263370.0 288630.0 292040.0 238630.0 311650.0 270800.0 True False 242159.18457206004 324141.3148643455 321372.3193327843 322094.91068601253 296908.6083837084 268677.6874619377 277912.9094988608 256437.78233858757 234848.03339604725 253517.31215645585 0.9551978226347467 1.2785766467274025 1.2676543333437218 1.2705045976790519 1.1711571326555956 1.059800157932117 1.0962285263080946 1.0115198057177626 0.9263589590722426 1.0 17.951724743596245 2.2580194551987876 1.1169954260199098 0.9755598119233998 1.203492840618937 0.4699832593204796 0.09339530954278735 0.4286043972946547 1.030701092307148 0.06311111505556263 0.03628185580942587 181.14212374933717 -2.2580194551987876 0.2279330286955371 LADVAAPPGGPPPPHSPYSGPPS(ph)RGSPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LADVAAPPGGPPPPHSPYSGPPSRGSPVR 29 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LADVAAPPGGPPPPHS(0.074)PYS(0.163)GPPS(0.423)RGS(0.34)PVR;LADVAAPPGGPPPPHS(0.231)PYS(0.292)GPPS(0.344)RGS(0.133)PVR 160.97 4.2683e-12 1174740000.0 271646.0 430265.0 406873.0 473020.0 480340.0 452350.0 477270.0 419190.0 520590.0 540040.0 True False 270183.48811870796 444586.1104243153 464157.18179648597 532904.2835001672 541508.4518017648 421080.1092173632 454182.6267515453 450472.0864036897 392297.5700486068 505574.1848484949 0.5344091850727578 0.8793686935529436 0.9180792764084259 1.0540575438199289 1.0710761507018762 0.8328750198025795 0.8983501143114139 0.891010854398514 0.7759446225802972 1.0 18.94756327430095 4.749618011898144 3.1602666047114547 0.9278871659632234 0.47039804983191713 0.646578897803745 0.08722874146779604 0.2415865351185796 3.6742622429248866 0.02246174900468488 0.277418559718601 56184.692965022026 -4.749618011898144 -0.4574891161313063 LADVDKDGLLDDEEFALANHLIK ddPTM_BT-474_Trastuzumab_2h_R1 4 LADVDKDGLLDDEEFALANHLIK 23 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 0 ;;; 225.23 7.1286e-33 2197280000.0 1567061.0 1296419.0 1202544.0 1160970.0 1179773.0 1719567.0 1722281.0 1589256.0 2448156.0 1658528.0 False True 1558624.1176928445 1339569.5227131662 1371851.7425001736 1307948.6829630642 1330010.0984875765 1600697.380715315 1638967.688277659 1707854.3527984498 1844840.7574097032 1552679.323102742 1.0038287330175963 0.8627470610198407 0.8835383598454716 0.842381722678815 0.8565903330443003 1.030925933576946 1.0555738483091832 1.099940166257653 1.1881659850555173 1.0 20.566328468115177 2.547241746980376 2.7274317955212095 1.0934554639212712 0.8852519625706867 0.7006355706806143 0.060965741637058576 0.14570015476166723 2.1425981667747664 0.021889707087794082 0.019495687913991748 352.5670704203308 -2.547241746980376 -0.20820350135058452 LAEAHAK ddPTM_BT-474_Trastuzumab_2h_R1 3 LAEAHAK 7 0 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;E5RG31 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 ;; 91.041 0.016694999999999998 783910000.0 1814910.0 1926900.0 1696850.0 1526240.0 1503800.0 1660310.0 2157610.0 1774590.0 2667890.0 2221490.0 False True 1805138.7262154592 1991035.7016643533 1935751.730715399 1719461.8275110868 1695300.0162790788 1545536.6776493422 2053238.161429385 1907018.916985433 2010424.257394451 2079712.6062867222 0.86797508499912 0.9573609813421772 0.9307784762490035 0.8267785761904599 0.8151607155500187 0.7431491605990991 0.9872701426258089 0.9169627145696685 0.9666836904854926 1.0 20.987952746665684 2.1827792820247653 24.999999921378116 0.957056666179689 0.8615294367913732 0.44642661792325644 0.05987451575368826 102.99596909229393 46159.74794494497 0.02466875738703706 0.01821909379793577 152.32783935713772 -2.1827792820247653 -0.09552722938831582 LAEAHQQECCQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAEAHQQECCQK 12 0 Q9Y5X3;A0A087WUY5 Q9Y5X3 SNX5 Sorting nexin-5 0 ; 253.88 4.2754e-21 521180000.0 778220.0 700070.0 693110.0 647040.0 668900.0 857790.0 817330.0 729860.0 977610.0 915800.0 False True 774030.1499883705 723371.4067487492 790693.8633798813 728955.1976574939 754080.4501190835 798492.9963204646 777792.6253961922 784325.8593539841 736691.1148028551 857352.8599441735 0.9028139826101139 0.8437265921010068 0.9222502196252862 0.8502394191639598 0.8795450337311355 0.9313469793201116 0.9072024620607647 0.9148227013613222 0.8592624451626891 1.0 19.709529569694794 2.7573958807300234 21.93190464323564 0.9158757837482324 0.8784411989516353 0.22361912393255812 0.03887489333700147 275.8462795717826 321195.1453938838 0.010995916338328755 0.01163381162782396 571.9998049894126 -2.7573958807300234 -0.037434584796597115 LAEAPSPAPTPSPT(ph)PVEDLGPQTSTSPGRLS(ph)PDFAEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAEAPSPAPTPSPTPVEDLGPQTSTSPGRLSPDFAEELR 39 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 2 LAEAPSPAPTPS(0.379)PT(0.621)PVEDLGPQT(0.002)S(0.011)T(0.011)S(0.051)PGRLS(0.926)PDFAEELR 149.44 3.3775e-12 115560000.0 85292.0 122070.0 116490.0 112810.0 99904.0 112930.0 114410.0 92377.0 102900.0 116640.0 True False 84832.79734883195 126133.02615712669 132890.77945076887 127091.73443333019 112626.18222259951 105123.41490862565 108875.551211357 99270.64082090138 77541.6737893576 109195.93533947185 0.7768860359600476 1.1551073376953114 1.216993828915277 1.163887044313722 1.0314136865302137 0.9627044686399231 0.9970659702019234 0.9091056412703056 0.7101150198337837 1.0 16.73655962946082 2.205851341469066 1.2021667346205307 0.8643554802652996 1.0864526676622177 0.27007753897866227 0.1328724667323063 0.5894452045863953 1.6315785559599918 0.08906332422633613 0.04914281785099799 160.63912928925927 -2.205851341469066 0.22209718739691808 LAEAQIEELR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAEAQIEELR 10 0 Q9NR28-2;Q9NR28;Q9NR28-3 Q9NR28-2 DIABLO Diablo homolog, mitochondrial 0 ;; 140.49 9.1212e-05 295477000.0 257530.0 333285.0 323898.0 316344.0 313434.0 378909.0 313555.0 292139.0 356518.0 308074.0 False True 256143.48709427306 344378.18974996306 369500.0230281154 356393.11796451895 353347.96203113254 352715.9126858445 298387.1467535792 313939.89563178393 268658.9159964448 288412.4535645789 0.8881152111447211 1.194047571433502 1.2811514151394994 1.2357064112861493 1.2251480741001144 1.2229565967991993 1.034584821375499 1.0885101934805639 0.9315094153390605 1.0 18.137773935506377 1.8291887891323801 1.5298861649444535 0.9840242583306882 1.1831892831593067 0.3301572801765835 0.10904543216589202 0.4438577374456433 1.967647734084346 0.08117929774350202 0.034083924910898865 67.48213108243498 -1.8291887891323801 0.19916502482861853 LAEDEAFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAEDEAFQR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 202.45 4.6103e-05 337610000.0 586360.0 615540.0 529920.0 561660.0 520360.0 644550.0 616640.0 525320.0 634440.0 597660.0 False True 583203.1029107209 636027.8767982121 604528.1298527885 632766.0984117023 586624.7615846399 599993.7756074972 586810.767406443 564522.0459209101 478090.7630604469 559516.8271175312 1.0423334467261949 1.1367448590864437 1.0804467364585664 1.1309152249656729 1.0484488279052497 1.07234268305833 1.0487812679906738 1.0089456090698188 0.8544707502782931 1.0 19.09382199443913 1.59032778917055 2.4599582661106174 0.9277648365803041 1.0846079312539283 0.6391789118878866 0.04550617502113852 0.14162330161980727 1.9123069667582924 0.030856768414517597 0.011598913386544726 38.93388925049452 -1.59032778917055 0.15684309467362423 LAEDEGDS(ph)EPEAVGQSR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAEDEGDSEPEAVGQSR 17 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR 364.14 1.4624999999999995e-104 5884460000.0 2032060.0 2956870.0 3144590.0 2713550.0 2466450.0 3304680.0 3196420.0 3124040.0 3880000.0 3033450.0 True False 2021119.614743092 3055287.6304843407 3587320.9387337347 3057085.15177345 2780537.7877055006 3076235.249979965 3041796.9530898156 3357171.7283536857 2923825.98933632 2839852.6239327933 0.7116987683481011 1.0758613333438412 1.263206727173681 1.0764942962215485 0.9791134104187597 1.0832376384799205 1.0711108483078104 1.182164067269265 1.0295696208654785 1.0 21.437384631364623 4.734783021733192 5.717786725826109 1.096297510271724 0.700122659408915 0.6601183556082345 0.07997002963801988 0.07795120413565997 10.945282286454757 0.019312813198776303 0.12074618754533914 54297.89854824431 -4.734783021733192 -0.396174850862809 LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK 32 0 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ;; 381.56 2.3450999999999983e-149 2006260000.0 975110.0 1045800.0 1037580.0 1032260.0 1003090.0 1288490.0 1296360.0 1108580.0 1430070.0 1321620.0 False True 969860.1161049068 1080608.8208005491 1183662.2451929664 1162944.010159999 1130827.5657197642 1199419.7190792104 1233650.114223884 1191307.868855177 1077648.4104562337 1237273.080104192 0.7838690841178197 0.8733794003742084 0.9566701678285031 0.9399250891824674 0.9139676470003987 0.9694058153905734 0.9970718138634335 0.9628495826926549 0.8709867108443706 1.0 20.23873252382757 4.578334674457146 1.9648266441125806 0.9528432940772126 0.7610059185716134 0.6782268817874659 0.03633879804163319 0.30538044521112967 1.6222224909551404 0.009398675545971057 0.09405259579346377 37873.43311832716 -4.578334674457146 -0.1918373755055992 LAEEENK ddPTM_BT-474_Trastuzumab_2h_R1 1 LAEEENK 7 0 Q02790;H0YFG2 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 82.671 0.055501 281360000.0 415200.0 326080.0 323060.0 315540.0 332910.0 409500.0 408030.0 323450.0 481810.0 368300.0 False True 412964.609333057 336933.37568047736 368544.03991214203 355487.3316469553 375304.1151878363 381192.22885931336 388292.0300740321 347587.48144581966 363074.3814232297 344794.77868250635 1.1977113195015134 0.9771997620379631 1.0688794108785054 1.031011354073592 1.0884854945365154 1.1055626489353614 1.1261540315596799 1.0080996086251204 1.0530158919765882 1.0 18.395378401920986 1.6691342100289963 9.686256009088629 1.0232967882618866 1.0789807285714914 0.2114676763401997 0.056183179826860656 0.20256145805972478 28.698553449032957 0.025975610040808186 0.013919399155278638 46.6803614353408 -1.6691342100289963 0.055683940309604774 LAELEEFINGPNNAHIQQVGDR ddPTM_BT-474_Trastuzumab_2h_R1 10 LAELEEFINGPNNAHIQQVGDR 22 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;;;;; 375.32 2.864699999999998e-113 22483727000.0 9490149.0 10577743.0 9753153.0 9779172.0 9788133.0 10941410.0 11152818.0 9071277.0 11207329.0 11353602.0 False True 9439055.092238668 10929816.781374319 11126312.166474417 11017214.172518916 11034593.718740387 10185056.08000874 10613313.585437845 9748221.752751252 8445432.938464588 10629005.400052292 0.888046880867351 1.0283009905442844 1.0467877047479606 1.0365235276354938 1.0381586332326165 0.9582322801302398 0.9985236798718373 0.9171339542929664 0.794564742475626 1.0 23.34150326846107 1.659340529299223 3.706855856282988 0.885912569865904 1.0039712983721942 0.31035456045346377 0.0645954463890178 0.18760604915711604 6.068437021384769 0.03627215132551615 0.016443040811841045 45.639463366727995 -1.659340529299223 0.11805872850629018 LAENFCVCHLATGDMLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAENFCVCHLATGDMLR 17 0 F8W1A4;P54819-2;P54819;P54819-3;P54819-5;F8VZG5;A0A5F9ZHP2;G3V213 F8W1A4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed 0 ; 209.66 4.08e-12 2130900000.0 652970.0 781470.0 823890.0 708270.0 787190.0 871260.0 682370.0 650580.0 1001180.0 705510.0 False True 649454.482071787 807480.756541409 939886.5506197433 797936.9093794416 887433.9804593232 811031.8469254342 649361.1561934594 699129.583178302 754452.6041246739 660483.7477825 0.9833012307301391 1.2225596152099654 1.4230275215329777 1.2081098317080854 1.3436121379803563 1.2279361144742509 0.9831599314496633 1.0585114100468802 1.1422727760640043 1.0 19.333163536617374 2.299667129044109 7.401059127577277 1.049545889213306 1.2474498530345755 0.3983179883321585 0.11305912802874107 0.22725710280201036 23.118927709183765 0.03994593933520013 0.03321441315445221 199.37336047559148 -2.299667129044109 0.1979039638212694 LAEQAER ddPTM_BT-474_Trastuzumab_2h_R1 12 LAEQAER 7 0 P27348;E9PG15;P31946-2;P31946;Q4VY19;A0A0J9YWE8;Q4VY20;P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1;P31947-2;P31947;P61981;P62258;B4DJF2;I3L3T1;I3L0W5;Q04917;F8WEB6;A2IDB1 P27348;P31946-2;P63104;P31947-2;P61981;P62258;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta 0 ;;;;;;;;;;; 191.63 0.001217 59060270000.0 10286550.0 11858800.0 10993770.0 11300050.0 10177510.0 10637750.0 10953520.0 9758680.0 12730250.0 11140740.0 False True 10231168.357743133 12253512.989204023 12541597.256438144 12730635.171379756 11473555.5716721 9902387.381069977 10423656.391090147 10486922.25517297 9593050.46411049 10429728.435132617 0.9809621047542683 1.1748640499524392 1.2024855042430138 1.220610416710038 1.1000819094218546 0.9494386591805892 0.9994178137925417 1.0054837305109205 0.9197795056481268 1.0 23.314198258273628 2.885919976371269 4.321693963741613 0.9803367602974251 1.1520394642037008 0.602065752470412 0.06587564465194466 0.1591802347060332 4.920546370393936 0.02073899977690802 0.022271829975498838 768.9887324335257 -2.885919976371269 0.17170270390627573 LAEQAERYDEMVESMK ddPTM_BT-474_Trastuzumab_2h_R1 4 LAEQAERYDEMVESMK 16 1 P62258;B4DJF2;I3L3T1 P62258 YWHAE 14-3-3 protein epsilon 0 ;;; 250.95 3.8849e-21 1744921000.0 672706.0 862024.0 818205.0 915059.0 785323.0 946555.0 1156672.0 794734.0 1477340.0 1054930.0 False True 669084.2256406631 890715.9477354888 933401.1520346496 1030905.3755768874 885329.2290758973 881121.8808007976 1100719.3564438645 854041.0866574813 1113269.3523417835 987603.464228989 0.677482663715654 0.9018963379506377 0.9451173328592417 1.0438454429498216 0.8964420044507073 0.8921818449560418 1.114535738595433 0.8647611289255872 1.127243263783912 1.0 19.91357237148577 4.85423951800664 1.672272749720764 0.9787712716108091 0.5046112422316785 0.5422282810740129 0.08551324799556663 0.9887809897217228 2.1482053066531166 0.020978582870909 0.8227641445953746 71489.04870489832 -4.85423951800664 -0.4741600293791306 LAEQAERYDEMVESMKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LAEQAERYDEMVESMKK 17 2 P62258;B4DJF2;I3L3T1 P62258 YWHAE 14-3-3 protein epsilon 0 136.35 5.965800000000001e-06 309010000.0 131580.0 157750.0 155930.0 172470.0 146620.0 204940.0 271290.0 182760.0 386600.0 228940.0 False True 130871.58789991237 163000.61338811132 177883.58863214342 194304.6843162527 165291.1879151741 190772.98017686827 258166.66627155844 196398.4792364759 291327.6101745934 214328.85319460498 0.6106111517383261 0.7605164258500979 0.8299563310341133 0.9065726868786498 0.7712036221511157 0.8900947181556158 1.2045352850236635 0.9163417631789931 1.3592552091438457 1.0 17.709466554776753 2.777009968023921 0.6303950287172027 1.136013542867811 0.7029765731459254 0.5776558509867225 0.13516212695696952 0.5929374190423782 0.5070528072001653 0.10129140955222718 0.11343504931370087 598.4253300944914 -2.777009968023921 -0.43303696972188566 LAEQFVLLNLVYETTDKHLSPDGQYVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAEQFVLLNLVYETTDKHLSPDGQYVPR 28 1 O95994;B5MC07;C9J3E2;H7C3Z9 O95994 AGR2 Anterior gradient protein 2 homolog 0 ; 136.94 3.9819e-06 520590000.0 143495.0 385410.0 415420.0 582280.0 483200.0 448510.0 566610.0 429350.0 648630.0 509020.0 False True 142722.43886379324 398238.1388647355 473907.52510463 655996.5882974861 544732.6558492163 417505.5593789756 539200.9096396032 461390.27719512425 488783.8276967052 476533.90780605335 0.2995011194919638 0.8356973813221623 0.994488571204691 1.3766000226881505 1.143114156046414 0.8761298042801564 1.1315058609828348 0.9682212947224471 1.025706292228081 1.0 18.862219347298566 4.7078034324840585 2.028628355259371 1.0692163969056467 0.11000784657173834 0.7696929568157602 0.12716613220379594 0.3197673866037485 1.507873114801548 0.03404975641343058 0.5543210355126211 51027.39908381906 -4.7078034324840585 -0.9592085503339084 down LAERLS(ph)PFLAESK ddPTM_BT-474_Trastuzumab_2h_R1 1 LAERLSPFLAESK 13 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 LAERLS(1)PFLAESK 160.82 2.6164e-05 294120000.0 447060.0 481730.0 394130.0 370550.0 378060.0 488570.0 470670.0 484550.0 652110.0 506570.0 True False 444653.0786330352 497764.09183806495 449620.0781606276 417461.5920066524 426203.70006281976 454796.30587007187 447901.89396599424 520709.581495044 491406.22832631593 474240.26890360325 0.9376113919238223 1.0496031747553756 0.9480849848539958 0.8802744502734499 0.8987083721257174 0.9589997638149036 0.944461960182123 1.0979868552682657 1.036196756261122 1.0 18.855258645230023 1.7540549929441227 24.999999999999297 1.0521794524480994 0.9457269822799895 0.4761836880470357 0.04755070803549534 4.547193877657152 7345.946832132565 0.023272786099669786 0.012906185432764044 56.76164758241618 -1.7540549929441227 -0.10645247016810988 LAERPYIIAGLHFDQEVNHYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LAERPYIIAGLHFDQEVNHYK 21 1 Q99447-3;Q99447;Q99447-4;I3L1L9;I3L1R7;Q99447-2;I3L2Q1 Q99447-3 PCYT2 Ethanolamine-phosphate cytidylyltransferase 0 139.44 1.1259e-07 543380000.0 279310.0 304950.0 269060.0 316340.0 264220.0 296600.0 344090.0 232880.0 437610.0 328870.0 False True 277806.225994258 315100.0764038321 306941.3092885555 356388.6115649287 297866.8508453643 276096.7401212998 327445.0521485521 250258.68814067898 329766.87917357415 307881.2350402279 0.9023161998098381 1.0234468377478771 0.9969471158203275 1.157552234446386 0.9674732232591079 0.8967637799855678 1.0635433890791297 0.8128416404071527 1.0710846964430512 1.0 18.23201441411771 3.021694294004207 24.99660742832606 0.9512177839631356 1.0241379032297033 0.05283808796317668 0.09211826432289064 498.5432648629142 574427.7026165762 0.025857730229171583 0.030903473233963627 1051.2216436202398 -3.021694294004207 0.07292011926656772 LAESKPNENR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAESKPNENR 10 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 ; 95.573 0.006684899999999999 129460000.0 156229.0 152850.0 140705.0 129779.0 138710.0 167098.0 168648.0 160656.0 220520.0 184078.0 False True 155387.88042267365 157937.51985022388 160515.04097021554 146209.00809345942 156373.89630141717 155546.90856638213 160489.85194207626 172644.96651463813 166175.8008166095 172329.98444289522 0.9016880081838825 0.9164831086174643 0.9314400015129417 0.848424657880176 0.9074096815301147 0.9026108199871945 0.9312938340991819 1.0018277844842916 0.9642883758959252 1.0 17.394814218620052 1.9323049795716158 3.2310212128000715 0.9877780934198935 0.9015562313968929 0.7535450519750002 0.022276369612340783 0.1231133879165472 2.3385192808049045 0.01124762000450718 0.006261743671917444 85.56673870277353 -1.9323049795716158 -0.08622186202300064 LAETYLHR ddPTM_BT-474_Trastuzumab_2h_R1 6 LAETYLHR 8 0 P26196 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 ;;;;; 170.66 0.00029388 2562120000.0 1705487.0 2157800.0 2015160.0 1952012.0 1676810.0 1773710.0 1957137.0 1555629.0 2450760.0 1962329.0 False True 1696304.8474894185 2229621.068582356 2298877.0119152814 2199136.5190557004 1890341.8142684698 1651097.6025642296 1862462.8063206137 1671717.9353040024 1846803.036501516 1837091.4831856203 0.9233643849613467 1.2136690464189988 1.2513677369669685 1.1970751261892922 1.0289862162936547 0.8987563317756682 1.013810593194302 0.909980777007985 1.0052863743612024 1.0 20.808992040657458 3.0735906317002324 4.498653168634505 0.9599956235422978 1.1575594050024398 0.4687760556407683 0.09027220935234054 0.16993650900472024 6.588113881248932 0.02651152865216858 0.03180443445282172 1184.6515628228478 -3.0735906317002324 0.19756378146014197 LAEVELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAEVELR 7 0 B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6;A0A0C4DGM9;Q9BVG8-4;H3BTU1;H3BMQ3 B7Z896 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 0 97.473 0.027851 27784000.0 24849.0 31464.0 31831.0 31962.0 33790.0 45091.0 27550.0 27242.0 37367.0 35783.0 False True 24715.215744983452 32511.260219610365 36312.528119988194 36008.385922862304 38092.95621097891 41973.96530279676 26217.301248779677 29274.93637207307 28158.403542146974 33499.29830463243 0.7377830878793579 0.970505708028952 1.0839787684438376 1.0748997067166302 1.137126988887145 1.252980433234699 0.7826224003370911 0.8738970024343705 0.8405669660923347 1.0 15.031843255924953 2.209585902490448 24.999989149675567 0.8619509047841917 1.0471972528353743 0.27261771487703457 0.13421021958199011 273.1410980495674 235670.2428149237 0.05221547671076781 0.038569890270544305 162.02644469433636 -2.209585902490448 0.18524634805118267 LAEVTEEEWLSIPEVGDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAEVTEEEWLSIPEVGDAR 19 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 157.52 1.2119e-08 27836000.0 25814.0 26647.0 24496.0 32318.0 26853.0 27273.0 25307.0 25285.0 33731.0 30465.0 False True 25675.020292205023 27533.929286548326 27944.8238769511 36409.4554863608 30272.570379799276 25387.681703736365 24082.80372787178 27171.895094628428 25418.447022243134 28520.69761760129 0.9002241332399918 0.965401676204302 0.9798085675052074 1.276597647593691 1.061424611195935 0.8901493941041816 0.8443974285190449 0.952707940701266 0.8912280955763288 1.0 14.799721650151195 2.7389630587525757 24.99559836622336 0.9102119179548536 1.0428987695275258 0.26557642115357727 0.10013133841702739 50.34974994883078 3127279.3704062826 0.03349073831783566 0.03357213153742215 548.2303302651565 -2.7389630587525757 0.13268685157267224 LAGESESNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAGESESNLR 10 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 100.98 0.0084711 874000000.0 636810.0 609640.0 674200.0 643210.0 575160.0 706470.0 756260.0 656700.0 932500.0 792410.0 False True 633381.4857162419 629931.498864838 769121.499748548 724640.3200501931 648403.2167595928 657633.3917514996 719676.8146062474 705706.288655032 702697.8698598244 741837.7153836677 0.8538005989472591 0.8491500038374924 1.0367786428205117 0.9768178471155509 0.8740499482750725 0.8864922585007439 0.9701270233126944 0.9512947023596002 0.947239342632235 1.0 19.50074409144705 4.283262824797513 24.958779860370853 0.9499729108124355 0.8514748486052496 0.44809060397397216 0.045802745248490255 125.57120724636825 70108.68024703999 0.011602704754778984 0.03177497255269963 19198.30225244371 -4.283262824797513 -0.09849806220718593 LAGESESNLRK ddPTM_BT-474_Trastuzumab_2h_R1 6 LAGESESNLRK 11 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 179.72 1.1189e-05 7223190000.0 3578770.0 3759340.0 3162660.0 3332940.0 3233550.0 4195860.0 4051360.0 3832870.0 5552070.0 4187940.0 False True 3559502.299958723 3884467.35933098 3607935.037666483 3754889.862265959 3645323.425747586 3905810.0741920313 3855380.2391018514 4118898.222319492 4183836.742426414 3920662.083724176 0.9078829605681312 0.9907682111795733 0.9202361643570571 0.9577183093267878 0.929772407798264 0.9962118618705245 0.9833492804969526 1.0505619036688352 1.0671250551774798 1.0 21.902665872707964 2.1902801467489823 1.434453137811496 1.0434382703474236 0.9441864500751692 0.6547622067158787 0.029466653227389505 0.2303522529104866 0.917595726866671 0.0166402601574459 0.009359023319510888 154.98160235413047 -2.1902801467489823 -0.09925182027225443 LAGFLDLTEQEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAGFLDLTEQEFR 13 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ; 152.85 9.151e-05 78750000.0 25694.0 44010.0 42016.0 43663.0 38522.0 31104.0 34784.0 26164.0 26566.6 35763.0 False True 25555.66635887177 45474.846245393215 47931.487590381155 49190.73132313177 43427.548362217545 28953.85369094033 33101.36503221606 28116.49053809998 20019.61740420161 33480.57472175527 0.763298317644052 1.3582456879345088 1.431620812627086 1.4692319869637191 1.297096860586412 0.864795599584689 0.9886737401406432 0.8397851820575298 0.5979472446508842 1.0 15.031036672703825 2.737122700129744 18.716747854672334 0.8586703648982414 1.289866044466517 0.4814229741994194 0.20964585553631782 3.3579596988806375 43703.81013028719 0.06693291667743595 0.06645003392786952 545.9120744734594 -2.737122700129744 0.43119567956827565 LAGGDWFTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LAGGDWFTSR 10 0 P30153;C9J9C1 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ;;; 226.47 7.016399999999998e-09 2538850000.0 555972.0 650494.0 602640.0 542422.0 503777.0 561646.0 597128.0 526939.0 676150.0 576505.0 False True 552978.7085262958 672145.2995580737 687486.4737592174 611092.56958422 567930.0148297823 522820.73399247316 568242.6373895213 566261.8639220253 509521.8924458129 539711.9573292373 1.0245811696718914 1.2453778176125325 1.2738025615760709 1.1322568664370702 1.0522835507298782 0.9687032627174869 1.052862790369641 1.0491927337021958 0.944062634756473 1.0 19.041830125039 3.2769203922266033 2.962290509626987 1.0140692017202013 1.1890266288736289 0.561644578876091 0.06947387372550007 0.1852409574219936 3.324199572144099 0.020486184651614066 0.027696289511494533 1891.9967769000598 -3.2769203922266033 0.17495742715342755 LAGLEQAILS(ph)PGQNSGNYFAPIPLEDHAENKVDILEMLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAGLEQAILSPGQNSGNYFAPIPLEDHAENKVDILEMLQK 40 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 LAGLEQAILS(1)PGQNSGNYFAPIPLEDHAENKVDILEMLQK;LAGLEQAILS(1)PGQNSGNYFAPIPLEDHAENKVDILEMLQK 279.54 1.4823999999999992e-77 773930000.0 593561.0 481884.0 457582.0 417643.0 361925.0 594465.0 553690.0 458591.0 690180.0 491178.0 True False 590365.3335268268 497923.2176349711 522005.5682259563 470516.5609780988 408014.0034524576 553371.0337700897 526905.8993987959 492813.38909791317 520094.38693818095 459830.59952135774 1.2838757014895137 1.0828405463952688 1.135212769157418 1.0232389089979312 0.8873137278753599 1.203423683300109 1.1458695875117 1.0717281312093792 1.1310564966306123 1.0 18.810742948124133 5.048386452589716 1.8541368715958306 1.076076128467069 1.541986430869595 0.3483876276749982 0.08501236098491546 2.9412395565783678 4.96696826375789 0.022214341043988412 3.139048713101105 111785.75196477678 -5.048386452589716 0.46591030240252596 LAGLVEELEADEWR ddPTM_BT-474_Trastuzumab_2h_R1 4 LAGLVEELEADEWR 14 0 A0A087WUN5;Q96DE5 A0A087WUN5 ANAPC16 Anaphase-promoting complex subunit 16 0 ;;; 234.61 7.5438e-17 96494000.0 57569.0 68320.0 58344.0 63524.0 63791.0 62944.0 69268.0 58573.0 71541.0 63595.0 False True 57259.05490051716 70593.98989968785 66558.32806486095 71566.13188673762 71914.40573112028 58592.82943423833 65917.24221054344 62944.01468766741 53910.67915028594 59536.31265358124 0.9617501042378194 1.1857299646762969 1.1179450842402368 1.2020585202035141 1.2079082920294775 0.9841528106580487 1.107177103729792 1.057237371315121 0.9055092051798928 1.0 15.861482251425604 1.4586431145624104 3.197692652469953 0.9538085633877601 1.1149249156840837 0.35849085675373216 0.08193666488380823 0.24454073093480713 4.742841163800227 0.06086591184228443 0.021251430881863292 28.750348577073645 -1.4586431145624104 0.1611163522963236 LAGS(ph)PPGSGQWKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAGSPPGSGQWKPK 14 1 H3BLU1;Q4KMQ1 H3BLU1 TPRN Taperin 1 LAGS(0.999)PPGS(0.001)GQWKPK;LAGS(1)PPGSGQWKPK 163.41 2.5951e-06 2115700000.0 3693300.0 3010900.0 2600900.0 2463900.0 2441300.0 3344700.0 3292800.0 3225200.0 4646300.0 3405000.0 True False 3673415.6831642073 3111115.9863725165 2967084.112571936 2775829.4873706405 2752185.084281231 3113488.761576912 3133514.684282462 3465880.8012337596 3501281.6222302453 3187689.984832832 1.1523754507629285 0.9759782165691588 0.9307944394497117 0.8707965644645992 0.8633791546154888 0.9767225722673871 0.9830048402422636 1.0872703486614355 1.0983758266611545 1.0 21.60407989780804 1.8931758287926153 3.342194967730472 1.0698479663347078 0.9533625834243696 0.23799348915492513 0.07889871354166991 0.33209429183793376 6.398182734054706 0.04220375011171227 0.022948615247431893 78.19443190806524 -1.8931758287926153 -0.11648538291033816 LAHEIEALK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAHEIEALK 9 0 O43847;O43847-2;G3V1R5;H0Y5G9 O43847 NRD1 Nardilysin 0 ; 124.92 0.00051606 278680000.0 501330.0 510110.0 477930.0 466650.0 458160.0 548290.0 562020.0 470950.0 736860.0 572850.0 False True 498630.8949829989 527088.7029819932 545218.3897579694 525727.8421532977 516503.96027292375 510388.00283583073 534832.9454751061 506094.6804356443 555270.726418134 536290.2225584404 0.9297780828526335 0.9828422760859779 1.0166480141236514 0.9803047306088232 0.9631053085563936 0.951701115118154 0.9972826707964539 0.943695519976582 1.0353922243242564 1.0 19.032654425364917 1.2304024978432886 24.999660959927358 1.0176961173329298 0.9719419332293384 0.3509731602342988 0.025532874180153955 223.7831838438106 685732.7815921062 0.022694621935616433 0.006058291194422475 16.99818289674701 -1.2304024978432886 -0.04575418410359133 LAHEVGWK ddPTM_BT-474_Trastuzumab_2h_R1 6 LAHEVGWK 8 0 P40429;M0QYS1;Q8J015 P40429 RPL13A;RPL13a 60S ribosomal protein L13a 0 ;;;;; 151.29 0.00047547 14822580000.0 18739560.0 20257840.0 17772860.0 17633810.0 17558610.0 20242420.0 20558950.0 18794690.0 24247640.0 21000870.0 False True 18638668.291120823 20932109.958277103 20275124.20353155 19866248.537964746 19794594.905464843 18843109.150931217 19564435.045684174 20197245.20530204 18272134.023729607 19660576.49685062 0.9480224699467233 1.0646742714604613 1.0312578680884241 1.0104611398931802 1.0068166062493482 0.95842098800865 0.9951099373316012 1.0272966923700018 0.9293793611116427 1.0 24.228802289905975 2.9824438115001723 14.684752121575476 0.9878378987178744 1.0172801833696032 0.1358974729271788 0.03650377593213271 7.672773169465055 6418.130234701706 0.010826310854673404 0.011852200422590112 960.3815573330834 -2.9824438115001723 0.029442284651728823 LAHGGQVNLDMEDHRDEDFVKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAHGGQVNLDMEDHRDEDFVKPK 23 2 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 ; 300.41 2.269499999999999e-62 1391240000.0 1550060.0 1260860.0 1159170.0 1139190.0 1140120.0 1615760.0 1534060.0 1145530.0 2194240.0 1504470.0 False True 1541714.6491878564 1302826.9628940346 1322371.0603137398 1283411.3371962183 1285307.5239793228 1504066.3142899247 1459851.6571217037 1231015.2654834758 1653498.9533096214 1408453.4365584322 1.09461527741737 0.9250053491846371 0.938881631433244 0.9112202816816186 0.9125665716858787 1.0678850114953913 1.036492665805739 0.8740191429341618 1.1739819793758748 1.0 20.425680438357105 2.7496161510215544 24.858673260115893 1.0109401827079627 0.9512208137319907 0.1362848687642776 0.08593078855592315 1694.7634307620285 3810721.122286655 0.02651637435931394 0.02790090849194085 561.8445222386556 -2.7496161510215544 -0.059719368975971965 LAHHLVALYYQSEEQAEEELLDMAVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAHHLVALYYQSEEQAEEELLDMAVLK 27 0 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RG31 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 ; 200.9 2.7296e-25 636110000.0 230940.0 236120.0 218993.0 221940.0 197438.0 240370.0 252050.0 142868.0 301570.0 239290.0 False True 229696.64469984613 243979.11146244587 249825.3108787211 250037.58124397934 222580.55899328954 223753.7876701176 239857.37857549638 153529.53562900424 227252.11433096757 224018.307333524 1.0253476487431363 1.0891034503675798 1.1152004220207548 1.1161479801368073 0.9935820051613287 0.9988192051508872 1.0707043608645377 0.6853437000594138 1.0144354585834319 1.0 17.773257112166274 1.7861727224854385 24.999999997616914 0.8662793452310185 1.059214237932613 0.35650906829136175 0.09437826234109208 85.33812941563515 44822.9799101323 0.04176218242548019 0.0233982428810372 61.11850498942544 -1.7861727224854385 0.19293489270159458 LAHLLASAQKEPEAAAPAPGTGGDSVCGETHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAHLLASAQKEPEAAAPAPGTGGDSVCGETHR 32 1 Q08379;Q08379-2;A0A087WYC0;A0A1W2PQY5 Q08379 GOLGA2 Golgin subfamily A member 2 0 79.021 0.00081666 193890000.0 35874.0 47566.0 42213.0 37864.0 37838.0 40988.0 45587.0 35336.0 63342.0 51660.0 False True 35680.85836997607 49149.205555745815 48156.22347802647 42657.57851771661 42656.44501660313 38154.596035373674 43381.78265074844 37972.95175257227 47732.212839314736 48363.01457164886 0.7377715943888398 1.0162560376159395 0.9957241893324074 0.8820289408246097 0.8820055034701867 0.7889209631225197 0.8970032789515049 0.7851651119951607 0.9869569393487744 1.0 15.561616553251886 4.774318683852353 22.526680678419588 0.8988023475016008 0.737770269425679 0.2795665607562615 0.08170402378877192 6792.32949965594 4278696.460290651 0.02021723110047987 3.4207161906622296 59472.84082728549 -4.774318683852353 -0.1610320780759218 LAHPNKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAHPNKPK 8 1 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BTV5;Q9H910-2;H3BU16;H3BMT0 A6NGP5;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein 0 ; 92.925 0.0068693 2045170000.0 4420000.0 4272300.0 4114400.0 3445300.0 3386000.0 4402000.0 4577500.0 4251700.0 6329000.0 4723500.0 False True 4396203.211108164 4414500.922840117 4693671.756994102 3881474.626745428 3817187.029605642 4097700.1011933926 4356068.837251874 4568983.443695137 4769302.7542550415 4422042.1860081935 0.9941567778385773 0.9982946198044111 1.0614262731019104 0.8777561279326601 0.8632181397282059 0.9266533264108033 0.9850807961613152 1.033229275413039 1.0785294562194854 1.0 22.076281357765176 1.8310043527799567 2.993241770965549 1.0429281928283716 0.9532429272153066 0.2936140154799669 0.05764199183860658 0.3438246920964166 5.542101009789035 0.03505539133099673 0.01773869019287044 67.764829940582 -1.8310043527799567 -0.089685265613065 LAHYIDR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAHYIDR 7 0 Q03252 Q03252 LMNB2 Lamin-B2 0 ;; 100.45 0.0097841 728620000.0 959850.0 1102180.0 875520.0 994160.0 965200.0 1208110.0 740270.0 827470.0 1296010.0 1058920.0 False True 954682.2742493611 1138865.3950181194 998785.6058437378 1120020.5540664792 1088112.4988113896 1124596.1992850408 704460.3119939798 889220.0132075215 976625.7011442693 991338.8190129771 0.9630231924135555 1.1488154939317585 1.007511848308508 1.1298060083853305 1.097619177159596 1.134421630341018 0.7106150777948685 0.896988997256125 0.9851583357914332 1.0 19.91901869932313 2.263359046408154 24.999951129597033 0.8840046983388926 1.0830611527196907 0.48536291267839915 0.09132085767423201 168.7490185644024 170119.7886478174 0.030434741344099903 0.02545323652309328 183.38298870224313 -2.263359046408154 0.1990564543807981 LAHYNK ddPTM_BT-474_Trastuzumab_2h_R1 8 LAHYNK 6 0 Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;Q99880 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;HIST1H2BL Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-L 0 ;;;;;;; 124.34 0.018396 64066810000.0 40587300.0 46775500.0 44500200.0 35965000.0 33433800.0 36411100.0 41101300.0 38932300.0 58701100.0 38554600.0 False True 40368782.486472964 48332394.24111314 50765441.35732769 40518165.3124255 37691396.25234176 33894086.35950999 39113073.096786544 41837625.9202136 44235000.45944076 36094012.41974629 1.1184343269186676 1.3390695852554062 1.406478192752961 1.122573041789581 1.044256200004009 0.939050110731586 1.083644363002119 1.1591292603790735 1.2255495439249282 1.0 25.10525619470923 3.5830299559982084 6.229059250761219 1.082668001558449 1.291946438861981 0.4731399353830914 0.10038568752004909 0.21495975715748106 10.801282572687471 0.028239667482205716 0.04390968163422697 3828.5115003695864 -3.5830299559982084 0.20927843730353213 LAILDQELEHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAILDQELEHK 11 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 0 ; 165.35 2.1698e-05 253430000.0 547260.0 511130.0 451280.0 434530.0 461440.0 572660.0 537420.0 526970.0 744400.0 584260.0 False True 544313.6129663015 528142.6530653898 514816.3014039232 489541.453446636 520201.6488308406 533073.3620966404 511422.9414562316 566295.1772994399 560952.5944489584 546972.0265898485 0.9951397631061297 0.9655752531955752 0.9412113899381594 0.895002723445897 0.9510571355432736 0.9745898074900454 0.9350074895872624 1.0353274934918766 1.0255599320979414 1.0 19.06110752659164 1.7313126502471774 8.167701860296537 1.0219249763546552 0.9500195633239173 0.5914755906060474 0.02629874287686796 0.0778284684279907 16.405749421837367 0.013423054609916668 0.0071467851367758 53.86574244930483 -1.7313126502471774 -0.07190541303073783 LAIQGPEDS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 7 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 LAIQGPEDS(0.999)PS(0.001)R;LAIQGPEDS(1)PSR;LAIQGPEDS(0.938)PS(0.062)R;LAIQGPEDS(0.991)PS(0.009)R;LAIQGPEDS(0.798)PS(0.202)R;LAIQGPEDS(0.994)PS(0.006)R;LAIQGPEDS(1)PSR 305.78 4.9424999999999996e-37 19925640000.0 4748710.0 5730200.0 5312370.0 5352240.0 4988920.0 5752350.0 5702010.0 4824570.0 5638640.0 5727160.0 True False 4723143.472991283 5920926.243020949 6060305.520052195 6029833.03522247 5624229.39035445 5354703.584075386 5426181.992506506 5184603.912070062 4249072.725904982 5361647.7455316335 0.8809126778101981 1.1043109364943668 1.1303065415110156 1.1246231235999602 1.048974057469861 0.9987048456396571 1.0120362713176476 0.9669795850335153 0.7924938242065854 1.0 22.354245008251468 1.867433868184799 1.4073883744689595 0.9023533172252032 1.0621176778418264 0.3260749825680276 0.08368459941080723 0.4506461135093614 1.6686042653612323 0.06206112371253847 0.026482532215572903 73.6942949445748 -1.867433868184799 0.15976436061662325 LAIRES(ph)IESEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAIRESIESEIR 12 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 LAIRES(1)IESEIR;LAIRES(1)IESEIR;LAIRES(0.999)IES(0.001)EIR 164.15 3.5171e-05 289006000.0 332522.0 357230.0 332315.0 330558.0 318270.0 374610.0 336077.0 306269.0 389430.0 357611.0 True False 330731.738498667 369120.18459990516 379102.0634662393 372406.6089071251 358799.7979659152 348714.092437087 319819.67157118453 329124.3479824699 293460.1945946504 334787.9598138191 0.9878842079105599 1.1025491621776924 1.1323646874190578 1.112365597359673 1.0717225259995893 1.0415968741259765 0.9552902432603649 0.9830829883054969 0.87655540168723 1.0 18.352888118725186 2.3823770370147663 1.888129458196597 0.9506737127428138 1.0883420634738927 0.6195641648485264 0.047082548483049574 0.21920699427286003 1.5953129535599928 0.02109621910152356 0.01557924585270164 241.19985201624624 -2.3823770370147663 0.13766835073107897 LAIRES(ph)IESEIRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAIRESIESEIRR 13 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 LAIRES(1)IESEIRR;LAIRES(0.999)IES(0.001)EIRR 158.17 2.4901e-05 581430000.0 144813.0 204928.0 179710.0 217700.0 175933.0 200436.0 208550.0 179685.0 227900.0 218760.0 True False 144033.34289823694 211748.904598408 205011.60593267813 245260.79767871596 198337.024713411 186580.33109559273 198461.63976163353 193094.00712194192 171737.0987035429 204798.54951014146 0.7032927881703797 1.0339375210659016 1.0010403219312163 1.197570970426091 0.9684493624970205 0.9110432253640225 0.9690578387216843 0.9428485093464007 0.8385659913818805 1.0 17.643845971894176 2.998631617029033 24.999989212028435 0.9337373554012546 1.0005326623624218 0.03350503533598359 0.11982724221250861 165.0177426166449 3014929.5290881405 0.03489598222669602 0.041181571646535006 996.8541403880357 -2.998631617029033 0.0667953069611672 LALDGETLGEEEQEDEQPPWASPS(ph)PTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LALDGETLGEEEQEDEQPPWASPSPTSR 28 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 LALDGETLGEEEQEDEQPPWAS(0.02)PS(0.611)PT(0.184)S(0.184)R;LALDGETLGEEEQEDEQPPWASPS(0.548)PT(0.226)S(0.226)R 110.15 0.00042961 113256000.0 36541.6 45432.0 39310.8 44681.0 31562.0 38374.0 41754.0 33181.4 38904.7 46021.0 True False 36344.86408575343 46944.17665577605 44845.418944401106 50337.61001875384 35581.23361736955 35721.29570267957 39734.199504230404 35657.56455973515 29317.1579812713 43083.90037943961 0.843583421316651 1.0895990437806005 1.040885772862898 1.16836241787375 0.8258591562975003 0.8291100710029121 0.9222516799614608 0.8276308376377074 0.6804666644169932 1.0 15.394861242322913 3.216229466845255 24.995455504475903 0.8426144837543447 1.0398412103011916 0.42273358214783274 0.10751912099968056 208.52700379997898 233405.52400080126 0.0301141687428472 0.036018866345796804 1645.2407844373693 -3.216229466845255 0.19722672654684692 LALDMEIHAYR ddPTM_BT-474_Trastuzumab_2h_R1 9 LALDMEIHAYR 11 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;;; 177.44 7.9817e-06 6024550000.0 4838330.0 6230990.0 5855110.0 5914960.0 5524000.0 5944650.0 6007310.0 5186070.0 7230000.0 5985670.0 False True 4812280.968868998 6438384.735437004 6679458.594471552 6663793.329525484 6227448.656686814 5533710.337700895 5716713.465147243 5573080.8777298685 5448263.377036493 5603659.4160100855 0.8587747062428422 1.1489607517976634 1.1919815425234135 1.1891860005778572 1.1113181930533669 0.9875172502259255 1.0201750393348592 0.9945431126322825 0.9722688287354485 1.0 22.417937842408204 2.742126544503703 22.413599070982894 0.9966740481218936 1.1128217939695015 0.2528868423327818 0.08899063360153057 98.7470170404776 620672.807991879 0.028066122629582566 0.02865185998123803 552.238326760773 -2.742126544503703 0.1161477458476079 LALEAEVSELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LALEAEVSELR 11 0 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;A0A0C4DFM8 Q7Z406 MYH14 Myosin-14 0 90.629 0.026392 12133000.0 16179.0 19244.0 16170.0 15485.0 18867.0 19062.0 17441.0 11889.0 19083.0 15109.0 False True 16091.894061655887 19884.524906756338 18446.595447840424 17445.399412287185 21269.600616529715 17744.288807121426 16597.312198909847 12776.217551118742 14380.25034909923 14144.730684534308 1.1376599824025342 1.405790279803479 1.30413196682562 1.233349704661524 1.5037119540060002 1.254480498983472 1.1733918848703966 0.9032492619380952 1.0166506998130713 1.0 13.787977087652603 2.008170802267674 2.6902002617648555 0.9670418390088678 1.317523814798583 0.6989309577701663 0.09743513740556754 0.13999302424345464 1.9319267521092278 0.04717659781632717 0.02703049869508003 101.8992065341569 -2.008170802267674 0.3504819757897153 LALLHEGTGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LALLHEGTGPR 11 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ;; 173.64 1.1941e-05 1090080000.0 476562.0 639130.0 585840.0 565062.0 579021.0 575400.0 573715.0 505087.0 677180.0 587286.0 False True 473996.243143016 660403.0556877567 668321.1797874352 636598.7912628874 652755.8922236525 535623.9523459066 545962.2136458678 542779.1567198175 510298.0627471049 549804.904679159 0.8621171603036508 1.2011589021257234 1.2155605999503347 1.157863063506822 1.1872500348183888 0.9742073011488906 0.9930108098334741 0.987221379984885 0.9281438895946035 1.0 19.068560251285383 2.727486781900213 24.341713963829584 0.9780733087815168 1.1359128795898448 0.3713479329111937 0.09590500841698686 525.5875566161338 1155307.1767269515 0.030515152949331895 0.02903832698157864 533.9330226484345 -2.727486781900213 0.157839570808328 LALLIHNDS(ph)LTSLIYGEQSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LALLIHNDSLTSLIYGEQSEK 21 0 G3V4J5;Q9P1W3 G3V4J5 TMEM63C Calcium permeable stress-gated cation channel 1 1 LALLIHNDS(0.912)LT(0.084)S(0.004)LIYGEQSEK 111.3 0.00016208 393510000.0 241620.0 215870.0 228720.0 187480.0 208200.0 259890.0 265550.0 224030.0 266970.0 247850.0 True False 240319.14476650546 223055.10245382943 260921.78793012147 211214.9487772425 234713.0359019178 241924.41601525486 252704.33200048827 240748.25620128954 201178.82071472067 232032.0008049395 1.0357155217074245 0.9613118090609553 1.1245077705875084 0.9102837024398324 1.0115545919859223 1.042633840056534 1.089092586901094 1.0375648848698136 0.8670304958661459 1.0 17.823964263491575 1.262742776478534 24.9010343555129 0.933515198025871 1.0274460219591945 0.2533904712287498 0.06388776521730692 243.95000700394797 251202.90680444907 0.04074879027186896 0.014863241049632167 18.31229502252425 -1.262742776478534 0.09393082393332353 LALLNVATQGVHLWDLQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LALLNVATQGVHLWDLQDR 19 0 A0A499FIZ0;Q9H7D7-2;Q9H7D7;H0Y9R3 A0A499FIZ0 WDR26 WD repeat-containing protein 26 0 ; 238.65 2.9404e-24 812780000.0 244130.0 262940.0 246460.0 240760.0 233330.0 295120.0 259470.0 223070.0 347110.0 270620.0 False True 242815.63120539283 271691.79894941376 281159.4257312774 271240.19131432124 263043.1924447381 274719.0490377541 246918.44482834366 239716.6161265085 261569.39153570353 253348.7999105616 0.9584242407744294 1.0724021548368403 1.1097720842985388 1.0706196019482854 1.0382650027850888 1.0843510967280554 0.9746185690064922 0.9461920333198122 1.0324477227760465 1.0 17.950765469402725 2.229251630100354 24.99914657555711 0.9794688625997681 1.05875279082093 0.3630985911081337 0.042930291500598426 185.8386819013902 499062.66391690535 0.016030942871260504 0.012005491287065642 169.53197837440968 -2.229251630100354 0.07928392822116193 LALPGHAESYNPPPEYLLSEEER ddPTM_BT-474_Trastuzumab_2h_R1 5 LALPGHAESYNPPPEYLLSEEER 23 0 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ;;;; 305.47 2.1821e-62 1228648000.0 435526.0 567909.0 537449.0 523557.0 475992.0 531469.0 531608.0 497739.0 611967.0 530526.0 False True 433181.17640748725 586811.5077567595 613117.1476095474 589839.2625184916 536606.7597743799 494729.7989734555 505892.09010022745 534882.8116474291 461155.9327876753 496667.37647384004 0.8721756187872012 1.1814979915188117 1.2344622913678343 1.187594133333537 1.0804147507816904 0.9960988428228553 1.018573222368418 1.076943719245071 0.9285005511368932 1.0 18.921920461105 2.9633076763099497 4.766303135239912 1.0166337065006754 1.1323007604206126 0.22812969218096824 0.09787043124053212 0.30671941587098783 16.72685531083189 0.0302858227789003 0.03345028294942908 918.9834205352782 -2.9633076763099497 0.11566705391993715 LALQLHPDRNPDDPQAQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LALQLHPDRNPDDPQAQEK 19 1 Q9UBS4 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 0 ; 126.4 1.5289000000000002e-05 1106670000.0 781880.0 875370.0 793200.0 794930.0 791820.0 904600.0 961910.0 930280.0 1331720.0 907960.0 False True 777670.4449550346 904506.1612776611 904875.6653820063 895568.0564939916 892653.5835151619 842067.1311993526 915378.7384469575 999702.2174661229 1003535.4501337544 850013.2154563363 0.9148921814557156 1.0641083512943619 1.064543055246755 1.0535930973887258 1.0501643589575649 0.9906518109218834 1.0768994196819979 1.1761019702845736 1.1806115856622281 1.0 19.697125745951983 1.9837231376086601 6.268104956600314 1.1361100887508098 1.0295225823566123 0.30541351945755324 0.06340136447690013 0.16894179086271996 26.855941366282163 0.025139359604217724 0.016516902566349512 96.32147791888855 -1.9837231376086601 -0.10658750639419745 LALS(ph)PEDKPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LALSPEDKPIR 11 1 H9KVB4;O15417;O15417-2;O15417-3 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 LALS(1)PEDKPIR;LALS(1)PEDKPIR 132.51 0.00010964 605380000.0 532010.0 534220.0 438720.0 427910.0 461520.0 613050.0 579680.0 549800.0 738770.0 599470.0 True False 529145.7172718673 552001.1897571901 500487.9625774003 482083.3621253988 520291.83635664365 570671.2964644735 551638.6638073543 590828.8678278314 556710.0325108226 561211.3113679121 0.9428635997769054 0.983588852497871 0.891799492347182 0.8590050705684378 0.9270872233285352 1.0168563692586725 0.982942882000676 1.0527743398252767 0.991979351153636 1.0 19.098184561601922 2.7595104199345584 5.913641646066528 1.0135087597455643 0.9188547127501472 0.6113854836184012 0.035006701403337295 0.12244806596776699 15.857660593213764 0.011827698128402196 0.012175551654974134 574.791609532155 -2.7595104199345584 -0.09465404699541713 LALS(ph)PLSLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LALSPLSLGK 10 0 P49454 P49454 CENPF Centromere protein F 1 LALS(0.915)PLS(0.085)LGK 69.01 0.061113 201010000.0 749710.0 591920.0 566090.0 480260.0 502490.0 808860.0 777080.0 643210.0 1008200.0 916180.0 True False 745673.6446606122 611621.6993768039 645790.5514575137 541060.8667578325 566479.1230084287 752945.4120516343 739489.6716661245 691209.5963542 759742.6191878554 857708.6080188401 0.869378758344271 0.7130879807648722 0.7529253471632741 0.6308213088913616 0.6604563807712021 0.8778568910376324 0.8621688820101957 0.805879281019198 0.8857817352943801 1.0 19.71012807418 2.7261872743568207 24.77574708061897 0.8668340035143849 0.7209357759478705 0.5248923475170523 0.07539864974090389 604.0426282337264 1209501.714954765 0.024445797975902923 0.023206078440662994 532.3377618844869 -2.7261872743568207 -0.14589822756651438 LALSPLS(ph)LGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LALSPLSLGK 10 0 P49454 P49454 CENPF Centromere protein F 1 LALS(0.118)PLS(0.882)LGK 94.692 0.008318899999999999 198990000.0 1185600.0 989010.0 844350.0 840440.0 770390.0 1368700.0 1300400.0 1174800.0 1802400.0 1571500.0 True False 1179216.8613325423 1021928.5999808294 963227.1407782359 946839.6178277456 868494.6000407239 1274084.9905732395 1237494.683989588 1262469.541513523 1358222.6709226249 1471205.5245711613 0.8015310176844733 0.6946198766339661 0.6547196327712302 0.6435807927677121 0.5903285336655323 0.8660142782869307 0.8411433095660124 0.8581190869858362 0.9232038951991636 1.0 20.48856737170736 2.666236467582648 7.063090415409685 0.8829504387167069 0.6750921591696339 0.7380827615962198 0.0654684907712302 0.14644131112891712 12.358511753360911 0.02153672724630735 0.020307296562269404 463.6993291450573 -2.666236467582648 -0.20785827954707292 LALTEWLQEFGVPHQYSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LALTEWLQEFGVPHQYSSR 19 0 O60502;O60502-3 O60502 MGEA5 Protein O-GlcNAcase 0 ; 200.39 6.4911e-16 367330000.0 346830.0 408160.0 392320.0 402060.0 408370.0 404160.0 375340.0 336030.0 430840.0 407130.0 False True 344962.7058164354 421745.35886206967 447555.24589343 452960.75477585976 460373.49890137493 376221.37049030466 357183.3702619586 361106.2649257657 324665.2549602217 381146.6148384704 0.9050656424237961 1.1065173936827564 1.1742338209749115 1.1884160507835655 1.2078645880050143 0.9870778221387245 0.9371285388782283 0.9474208896720812 0.8518119860458804 1.0 18.539986537280342 2.553031614558977 5.04083731654654 0.9346988726666424 1.1225725242635474 0.5076075957403718 0.0856349656880559 0.18264704888434594 8.398588354912318 0.029420553145967233 0.027296722222136666 357.2988468506461 -2.553031614558977 0.18787365159690494 LALVTGGEIASTFDHPELVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LALVTGGEIASTFDHPELVK 20 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 306.11 1.7844e-55 931220000.0 502560.0 566220.0 474270.0 490520.0 477600.0 535970.0 624340.0 528500.0 688810.0 586430.0 False True 499854.27279966505 585066.2904127825 541043.0935712602 552619.7817058519 538419.5290430172 498919.65543767036 594138.2889895859 567939.3536686228 519062.005081121 549003.535332017 0.9104755081356111 1.0656876554701165 0.9855001994551045 1.0065869272984698 0.9807214241660593 0.9087731195318118 1.082212136630911 1.0344912502706456 0.9454620447338495 1.0 19.06645591399433 2.2261013762294506 24.999796511988972 1.0224164312896904 0.9823513833935604 0.10418689800444714 0.05317009067461786 513.7311420820572 1030808.2016314194 0.019591251598417972 0.014568104487286848 168.30668891393333 -2.2261013762294506 -0.04006504789612997 LAMDLPGHADEVYAVDWSPDGQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAMDLPGHADEVYAVDWSPDGQR 23 0 A0A0A0MRH0;Q9NVX2;K7EN33;Q9NVX2-2 A0A0A0MRH0 NLE1 Notchless protein homolog 1 0 ;; 143.19 1.6415e-07 403380000.0 166396.0 181608.0 171970.0 195704.0 210247.0 194025.0 183605.0 188529.0 242699.0 204275.0 False True 165500.14242433343 187652.71249564583 196181.88120996408 220480.10633401707 237020.70921839838 180612.5084357221 174723.3247107874 202597.99131086405 182889.0834499835 191237.99461137378 0.8654145467309267 0.9812522499882211 1.0258520102589292 1.1529095292076657 1.2394017710762049 0.944438414566915 0.9136433639447703 1.059402404436292 0.9563428220508347 1.0 17.545009656708622 1.2304965759603357 24.910533035152064 0.9781714185978863 1.0265739224001529 0.02696260771665393 0.1052680107401746 887.839688785685 2742503.3959806487 0.10027219108043631 0.026823220540794272 17.001865490761656 -1.2304965759603357 0.04840250380226663 LAMQEFMILPVGAANFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAMQEFMILPVGAANFR 17 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90 P06733 ENO1 Alpha-enolase;Enolase 0 ; 189.33 8.3993e-10 260650000.0 342040.0 368700.0 330850.0 331100.0 348870.0 373770.0 344830.0 284000.0 412640.0 361500.0 False True 340198.49464421615 380971.9566161436 377430.80420024804 373017.22605155245 393296.5265855049 347932.1596599401 328149.2555214776 305193.52212277934 310950.401092716 338428.7605042793 1.0052292663817928 1.1257079807533863 1.115244471651444 1.102203091414968 1.1621250097050537 1.0280809442480603 0.9696257937195273 0.9017954669928837 0.9188060749605949 1.0 18.36849265185973 2.344484975798842 2.597013882211129 0.9322517910729748 1.1038537652903158 0.7161798965001809 0.045510718531058016 0.13154472711700588 1.815672343521432 0.017722588686435482 0.013677088739112633 221.04717848069242 -2.344484975798842 0.1716019742173409 LAPEYEAAATR ddPTM_BT-474_Trastuzumab_2h_R1 4 LAPEYEAAATR 11 0 H7BZJ3;P30101 H7BZJ3;P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;; 148.56 8.0898e-05 1559500000.0 425160.0 504670.0 467930.0 490390.0 436495.0 456744.0 489380.0 464430.0 529800.0 437353.0 False True 422870.9857997164 521467.6358705431 533810.4766795278 552473.3237191801 492080.05094143946 425170.362339727 465706.81978685345 499088.1249277546 399237.88895628403 409440.7571032585 1.0328013966940541 1.273609494960542 1.303755103561671 1.349336415914866 1.2018345570256452 1.0384172922787498 1.1374217434572713 1.2189507670382886 0.975080966000653 1.0 18.643295194639066 2.9521818132464137 7.047070859883438 1.1046347117856625 1.250396984282419 0.35442005295710455 0.10334628108115514 0.30636017724299425 38.00946387718426 0.03207614913280692 0.03446685524769357 895.7396799483663 -2.9521818132464137 0.14576227249675644 LAPGGHVGR ddPTM_BT-474_Trastuzumab_2h_R1 7 LAPGGHVGR 9 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ;;;;;; 174.27 5.479999999999999e-05 12436410000.0 10730019.0 12878390.0 11918280.0 13224040.0 12612510.0 11907530.0 12274830.0 11334930.0 13643700.0 12304390.0 False True 10672249.769921193 13307039.425998855 13596270.228453176 14898202.108108617 14218638.38829635 11084390.478410583 11681049.578495769 12180800.034208294 10281392.951213382 11519113.295881743 0.9264818823977262 1.1552138679594655 1.180322641093742 1.2933462607260708 1.2343518136400073 0.9622607394940217 1.0140580510369597 1.0574425063223498 0.892550727397493 1.0 23.45752633126356 2.7316686236912835 24.969123861432788 0.9968682964146609 1.1665573435280558 0.4370384489475052 0.09730379370818416 550.1281587912333 1993064.5999750167 0.03253088730073471 0.03128954029359047 539.0991209730919 -2.7316686236912835 0.16968904711339494 LAPS(ph)EDELTCFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LAPSEDELTCFSK 13 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 LAPS(1)EDELTCFSK 238.03 4.717199999999999e-09 0.0 233020.0 219130.0 204210.0 197960.0 196930.0 233870.0 233210.0 229990.0 290950.0 232400.0 True False 231765.44621095565 226423.60958311797 232960.99297486054 223021.71570270383 222007.8682044415 217703.1173707632 221928.74135128513 247153.021665556 219249.2710302583 217568.03303234966 1.065255051400382 1.0407025629056985 1.070750099304442 1.0250665623728983 1.0204066521639772 1.000620883208488 1.0200429643002153 1.1359804021797975 1.007727412775105 1.0 17.731107073425775 -0.30157792677422623 6.743287417731144 1.000036273897592 1.0468672217726467 0.09528188476105648 0.038017479046747245 0.0 0.0 0.039173699990738046 0.00923332963587276 0.4993695687747082 0.30157792677422623 0.046830947875054596 LAPVPS(ph)PEPQKPAPVS(ph)PESVK ddPTM_BT-474_Trastuzumab_2h_R1 5 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 LAPVPS(1)PEPQKPAPVS(0.992)PES(0.008)VK;LAPVPS(1)PEPQKPAPVS(0.98)PES(0.02)VK;LAPVPS(1)PEPQKPAPVS(0.999)PES(0.001)VK;LAPVPS(1)PEPQKPAPVS(1)PESVK;LAPVPS(1)PEPQKPAPVS(0.997)PES(0.003)VK 192.35 6.3595e-18 9433490000.0 7402800.0 5331620.0 5019978.0 4443105.0 4571930.0 7239650.0 7162600.0 6971830.0 10347110.0 7355830.0 True False 7362944.147328396 5509079.748667646 5726747.267969026 5005601.637438176 5154138.185547822 6739190.035802986 6816117.674210873 7492103.356835412 7797203.384670544 6886374.631757101 1.0692047036438528 0.7999971019964638 0.8316055361785932 0.7268848857502495 0.7484545150621165 0.9786266934599577 0.9897976858211821 1.0879604664963973 1.132265350292312 1.0 22.715313237695888 2.3992929144547546 2.2707057314713555 1.0681274322132486 0.828647753160067 0.5304973178016097 0.09604036702011584 0.22805696664803493 2.4062104429195257 0.03986641094872951 0.031249071590604374 250.78000947631537 -2.3992929144547546 -0.23947967905318157 LAPVPS(ph)PEPQKPAPVSPESVK ddPTM_BT-474_Trastuzumab_2h_R1 6 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK 199.92 4.6966e-22 8913660000.0 8297940.0 6764400.0 6563460.0 6345130.0 6009450.0 8377710.0 8480990.0 8346130.0 11371100.0 8482160.0 True False 8253264.813027809 6989548.964833857 7487538.117382981 7148422.807419166 6774717.8366992455 7798578.626708077 8070732.11317199 8968960.601389414 8568844.769933557 7940821.286857472 1.0393465001771858 0.8802047939804378 0.9429173440504571 0.9002120245736077 0.8531507752116023 0.9820871601297948 1.0163598728168746 1.1294751861792398 1.0790879759648415 1.0 22.920856796491066 2.224211535376647 2.4425870382455455 1.0808171710762475 0.9213568116033266 0.545476242410998 0.05686712783071616 0.1852247866632044 2.2540431299436112 0.02427065330682065 0.01670054294217542 167.57589029141386 -2.224211535376647 -0.15946035947292092 LAQANGWGVMVSHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAQANGWGVMVSHR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ;; 150.22 7.2728e-06 7078570000.0 5407650.0 6176130.0 6324480.0 4821650.0 4486850.0 5580990.0 5068010.0 3678000.0 7370260.0 5723700.0 False True 5378535.813246403 6381698.753500579 7214911.810634381 5432070.395625087 5058223.751856486 5195189.297537328 4822850.9946217025 3952471.0365055734 5553958.1794242 5358408.565693894 1.0037561987492647 1.1909690489743707 1.346465414531166 1.0137469603200469 0.9439787373140451 0.969539600022002 0.9000528674687128 0.7376203191765656 1.0364939722928692 1.0 22.353373156706102 3.483537478039016 4.089903600563748 0.9081843371665006 1.1834400935738316 0.5006872377269171 0.10921964014707686 0.16048329496162378 6.243760807047574 0.031842409687750366 0.04723195603239033 3044.650721003189 -3.483537478039016 0.275255756407331 LAQDGAHVVVSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LAQDGAHVVVSSR 13 0 F5GWZ1;Q9BTZ2-3;Q9BTZ2-2;Q9BTZ2-5;Q9BTZ2-8;Q9BTZ2-4;Q9BTZ2;Q9BTZ2-7 F5GWZ1 DHRS4 Dehydrogenase/reductase SDR family member 4 0 ;;; 134.37 9.6319e-05 2159010000.0 1497410.0 1856740.0 1633480.0 1769740.0 1775850.0 1880150.0 1666260.0 1516270.0 1958580.0 1720820.0 False True 1489348.11093789 1918540.4684769663 1863459.7855373146 1993788.902544471 2001993.9712123992 1750179.6558970378 1585656.6380686623 1629421.7668630502 1475914.202627405 1610995.7943318763 0.9244891365812429 1.1909034618384198 1.1567130045241005 1.23761272969142 1.2427058954816703 1.0863961669266087 0.9842711220275265 1.0114376291955596 0.9161502518009408 1.0 20.619521297071657 2.385087796852062 3.581702635251593 0.9822590738081198 1.1586650955898377 0.4652634245193349 0.08670630808192782 0.20845699767388726 5.25594574657218 0.03201323355684923 0.026285932530899482 242.7100707495872 -2.385087796852062 0.17640602178171783 LAQFEPSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAQFEPSQR 9 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 108.81 0.0059357 151320000.0 152040.0 226990.0 177500.0 184460.0 168100.0 178370.0 183110.0 163390.0 269730.0 205530.0 False True 151221.4335332321 234545.22493164768 202490.45714234243 207812.6170868901 189506.53859323918 166039.70173781613 174252.269751871 175582.9914776088 203258.65569682638 192412.8994369143 0.7859214947426771 1.2189683000361788 1.0523746470996465 1.0800347466050468 0.9848951871096978 0.8629343574350894 0.9056163607627692 0.9125323301683136 1.0563670954060336 1.0 17.55384599563335 3.0228497355212247 6.120443106266891 0.934929241460339 1.0475823503493304 0.10907886189227844 0.11156506402695165 0.27788316343672315 35.2636330557488 0.03122911975181083 0.03672133310568075 1054.0221450581203 -3.0228497355212247 0.1126531088889915 LAQGHTTVDELAR ddPTM_BT-474_Trastuzumab_2h_R1 6 LAQGHTTVDELAR 13 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;; 203.32 8.6833e-08 5239160000.0 1570669.0 2121550.0 1981000.0 2187600.0 2001670.0 2196180.0 2144250.0 1876521.0 2166340.0 2135890.0 False True 1562212.6926217328 2192164.509245941 2259907.5808393275 2464549.9357003192 2256570.809672396 2044363.2458516369 2040524.435669542 2016556.525800562 1632474.5344687756 1999575.671572573 0.7812721042925699 1.096314853401825 1.130193577051283 1.232536467980762 1.1285248374209857 1.0223985393080126 1.0204787269014755 1.0084922288610534 0.8164104803220128 1.0 20.931262448590115 1.6966815715361971 1.671455603791911 0.9157361675877735 1.0785898116174517 0.18548295681747473 0.11896657310167796 0.5481651354378451 3.057065165225954 0.0934332314178825 0.03581970252857568 49.73722736085652 -1.6966815715361971 0.16285364402967817 LAQGLTHLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LAQGLTHLGK 10 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ; 114.83 0.001303 2210500000.0 1821680.0 2067750.0 1845450.0 1724490.0 1745100.0 2113740.0 1959370.0 1881940.0 2641200.0 2152180.0 False True 1811872.2772876755 2136573.80876873 2105273.3190610483 1942810.257184059 1967328.1409819277 1967622.1290087546 1864587.7875797274 2022379.9190976871 1990311.6502667766 2014826.029826003 0.8992698379244911 1.0604259509955016 1.0448908679439963 0.9642570765039385 0.9764258113896925 0.9765717237525838 0.9254336404124927 1.0037491521153004 0.987833004340656 1.0 20.942223843937136 3.697698950232063 24.83761911111472 0.9751281555413522 1.0074186668125882 0.057220167889165174 0.04483390000771922 1061.7400252320401 645374.9192189774 0.011579205032775874 0.017938585794906696 4985.387842045511 -3.697698950232063 0.032290511271235944 LAQMCGLHIVVHADELEELINYYQDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LAQMCGLHIVVHADELEELINYYQDR 26 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 292.29 1.6440999999999994e-70 2431156000.0 1016729.0 1082887.0 1081534.0 985864.0 958899.0 1120529.0 1201812.0 729476.0 1132516.0 1039960.0 False True 1011255.0440332118 1118930.2391759858 1233804.5863379505 1110674.2813170855 1081009.103810344 1043069.4676715431 1143675.76219232 783913.2033240715 853422.60673691 973588.8624454489 1.0386879750176614 1.1492841407054208 1.26727475419028 1.1408042184534724 1.1103342956235942 1.0713654478868766 1.1747009505836468 0.8051788938454448 0.8765739211450029 1.0 19.89295313859915 1.7502618136633055 11.622478690621541 0.8827875632653093 1.1383310395441553 0.69782163634633 0.07288528016055783 0.06157636144112215 46.229352348857894 0.03433579281511851 0.018802514747261124 56.268043387281196 -1.7502618136633055 0.255543476278846 LAQMISDHNDADFEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 LAQMISDHNDADFEEK 16 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 ;;;;; 248.97 1.7181e-20 5717040000.0 4586020.0 4414780.0 4415720.0 4030820.0 4195130.0 5675110.0 5200320.0 5486380.0 6894220.0 5500020.0 False True 4561329.3778747255 4561723.283509138 5037414.993873717 4541121.398710719 4729354.9390164 5282803.003471973 4948760.654448416 5895801.534873145 5195231.858815005 5149004.0147959795 0.8858663471163482 0.8859428484422902 0.9783280376939687 0.8819417086608454 0.9184989806623394 1.0259854116041693 0.961110273021316 1.1450372767104466 1.0089780166972462 1.0 22.295861964362242 2.5274079967916916 1.503767218837078 1.0565715345744435 0.9082145710435793 0.5420051533115551 0.052805775052533276 0.2688213792631816 1.2308743435564211 0.024255311038854498 0.01930877223486926 336.82785281359 -2.5274079967916916 -0.14835696353086425 LAQTLSTQLFQMVHTQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAQTLSTQLFQMVHTQR 17 0 P53367;P53367-2 P53367 ARFIP1 Arfaptin-1 0 ; 199.01 1.3675e-11 832220000.0 277590.0 276160.0 278640.0 269000.0 317570.0 327120.0 322220.0 242370.0 306080.0 299840.0 False True 276095.4862831484 285351.81865775504 317870.0900177032 303055.3724188088 358010.65711513965 304506.96435765194 306632.9876000649 260456.88012992244 230650.68526187137 280703.9544940611 0.9835824606774102 1.0165578863043494 1.1324033200409664 1.0796263022551063 1.275402969510763 1.0847975580055265 1.092371456443277 0.9278703629215631 0.8216866259600603 1.0 18.098689862793073 1.699836921314254 3.9313758419642117 0.9000914068826836 1.100268856427995 0.49041176641656603 0.0831934783273093 0.15006889602199994 5.376641696446708 0.04769466373638577 0.022694189656561357 50.099907187244526 -1.699836921314254 0.20017744954531136 LAS(ph)LNAEALNNLLLER ddPTM_BT-474_Trastuzumab_2h_R1 2 LASLNAEALNNLLLER 16 0 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 LAS(1)LNAEALNNLLLER;LAS(1)LNAEALNNLLLER 169.51 5.871300000000001e-09 43913000.0 39315.0 24307.0 25995.0 28840.0 20777.0 25801.0 26198.0 22217.0 41372.0 34569.0 True False 39103.33240830715 25116.043801108222 29654.870047409517 32491.14104296816 23422.82779507279 24017.437599021072 24930.70265392126 23874.945355640077 31176.424956397466 32362.776823990116 1.2082811255961308 0.7760781448917577 0.9163265009270384 1.0039664154802344 0.7237582832419295 0.7421315460550113 0.7703511595902502 0.7377285789006178 0.9633420866804846 1.0 14.9820477802199 4.743877925264505 24.44418769977701 0.831972910905561 1.2082813453473367 0.4925925671122111 0.10852354820978406 342.0383269611624 1572315.7613329105 0.026203742888711357 0.2219758682151255 55446.98365300579 -4.743877925264505 0.37630843444177564 LAS(ph)PELER ddPTM_BT-474_Trastuzumab_2h_R1 3 LASPELER 8 0 P05412;P17535 P05412;P17535 JUN;JUND Transcription factor AP-1;Transcription factor jun-D 1 LAS(1)PELER;LAS(1)PELER;LAS(1)PELER 140.49 0.00068056 3174060000.0 4793600.0 5334100.0 4537600.0 4895500.0 5114900.0 5521000.0 5373500.0 4967600.0 6409700.0 5419400.0 True False 4767791.790219027 5511642.293968463 5176454.6384737585 5515269.798053073 5766252.196612489 5139346.265036064 5113563.276236577 5338307.536961681 4830115.320579641 5073529.252218232 0.9397387012471582 1.0863527181909283 1.020286743436145 1.087067704525741 1.1365367005800524 1.0129726290213181 1.0078907644024802 1.052188185300732 0.9520227597914871 1.0 22.274558234371163 -0.59271208748465 7.003995022261779 1.0000066143904685 1.0380748284749552 0.020873355337488242 0.05792887901189455 0.0 0.0 0.05389664469073104 0.012703560981339289 0.25543941593610453 0.59271208748465 0.038068214084486796 LAS(ph)PMKPVPGT(ph)PPSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 LAS(1)PMKPVPGT(0.778)PPS(0.106)S(0.116)K 60.735 0.046468 262940000.0 255080.0 146630.0 131020.0 118850.0 133840.0 227200.0 232720.0 209540.0 373010.0 267200.0 True False 253706.67762205246 151510.49091029304 149466.4771537447 133896.3978140349 150883.73066816866 211494.1987712723 221462.44452326687 225176.9388225605 281086.68357792305 250147.0672385709 1.0142300704252778 0.6056856575727673 0.5975144094381692 0.5352707081164173 0.6031800905515612 0.845479425787413 0.8853289665477195 0.9001782083969195 1.123685704897129 1.0 17.9324170124953 2.136482755159631 1.2533674535306505 1.0207240596063285 0.660244945124887 0.5355879498645868 0.13568222026550292 0.36432369149800575 1.0830397763008182 0.09380263453151629 0.048903404865812634 136.92500175258914 -2.136482755159631 -0.36047911448144154 LAS(ph)PMKPVPGTPPSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 LAS(1)PMKPVPGTPPSSK;LAS(1)PMKPVPGTPPSSK;LAS(1)PMKPVPGTPPSSK 174.82 2.2623000000000003e-09 3311870000.0 2529300.0 1732820.0 1543310.0 1375040.0 1339230.0 2325120.0 2089720.0 2082970.0 3329760.0 2300940.0 True False 2515682.5298316497 1790495.8661881897 1760594.6333090034 1549119.9230139712 1509773.0022618906 2164389.92714375 1988632.2600943702 2238411.7985073426 2509185.264498065 2154092.0392661598 1.1678621358670793 0.8312067606907654 0.8173256301103967 0.7191521507789026 0.7008860228536145 1.0047806164685045 0.9231881571652076 1.0391439909271045 1.1648458927283702 1.0 21.038648463475575 2.0227371226182234 1.4994563373238365 1.0781535512555014 0.8465021280781614 0.30757441857807155 0.132388315338219 0.4779300336164134 2.009245934141001 0.08963612368426849 0.043774198974104214 105.37488717129347 -2.0227371226182234 -0.23165142317734 LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_BT-474_Trastuzumab_2h_R1 4 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LAS(0.167)PS(0.167)GS(0.167)T(0.167)S(0.167)S(0.167)GLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.228)PS(0.228)GS(0.228)T(0.228)S(0.042)S(0.048)GLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.461)PS(0.461)GS(0.07)T(0.007)SSGLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.346)PS(0.346)GS(0.233)T(0.032)S(0.037)S(0.006)GLEVVAPEGTSAPGGGPGTLDDSATICR 255.91 1.8979999999999999e-62 8547190000.0 1399091.0 1701626.0 1359486.0 1608174.0 1388842.0 1472087.0 1452789.0 1434689.0 1866411.0 1589628.0 True False 1391558.4495096246 1758263.592755359 1550889.8119358562 1811768.6635102038 1565702.7963885292 1370325.0906100583 1382512.0458770732 1541752.7783831253 1406459.017676081 1488176.5800909984 0.9350761651043683 1.181488552015679 1.042140988296579 1.2174419942823038 1.0520947697569534 0.9208081278407608 0.9289973141443577 1.0360012373591114 0.9450887996033908 1.0 20.505114289390555 2.991427548716475 24.342714192573936 0.9724544061662383 1.1013505858547108 0.3749132793410246 0.07820099807468196 291.34524744621876 827321.8554724052 0.021952975741203928 0.02505242895355466 980.4547360758985 -2.991427548716475 0.12889617968847245 LAS(ph)YLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LASYLDR 7 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 1 LAS(1)YLDR;LAS(1)YLDR 96.331 0.013437 83483000.0 101591.0 90114.0 84726.0 86230.0 74292.0 96643.0 95408.0 88477.0 132409.0 98979.0 True False 101044.04534382114 93113.39001493667 96654.6843484061 97146.7091586389 83752.64583681707 89962.29688315166 90792.75054604623 95079.60301710265 99778.57613969923 92662.07547981467 1.0904573939295412 1.0048705420506183 1.0430878420099836 1.0483977253434298 0.9038503120412147 0.9708642550613803 0.9798264292690525 1.0260897192812675 1.07680057480943 1.0 16.499691376305506 7.999998475399851 0.8809378419657873 1.0003026691332344 38.992659524953524 0.2328717319416348 0.04585028696126273 1300.91709636273 3.0830386860159185 0.015212489897460114 99263.91060908813 99999648.94845855 -7.999998475399851 37.99235685582029 LASDDRPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 LASDDRPSPPR 11 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 LAS(0.002)DDRPS(0.998)PPR;LASDDRPS(1)PPR;LAS(0.004)DDRPS(0.996)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR 140.01 0.00010207 15366520000.0 4948630.0 5429520.0 4872040.0 4947520.0 5091800.0 5203370.0 5503130.0 4956220.0 6032310.0 5353710.0 True False 4921987.125924476 5610238.290985851 5557980.883469174 5573875.524719345 5740210.548536922 4843673.279315468 5236922.577901882 5326078.3035752075 4545728.0293127205 5012031.644258266 0.9820343276489597 1.1193541240731957 1.1089277318981698 1.112099028964576 1.1452861745421838 0.9664091576245996 1.0448702142376234 1.0626585547752296 0.9069631542570689 1.0 22.256964092697107 2.736343949983901 24.97703842434608 1.0092586087175548 1.0968602802384197 0.4090537262499703 0.05737576596047846 219.16462215198 2469510.1558619426 0.018226556474033356 0.017933805518261334 544.934055651317 -2.736343949983901 0.08760167152086495 LASDLLEWIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LASDLLEWIR 10 0 O43707;O43707-2;K7EJH8;P12814-3;P12814;P12814-2;P12814-4;H9KV75;G3V2W4 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 ; 193.1 1.4184999999999996e-06 873010000.0 864060.0 901850.0 863880.0 805200.0 734000.0 882490.0 798880.0 756410.0 994260.0 832860.0 False True 859407.9969660915 931867.5320701621 985506.7950204324 907138.237440983 827470.5492411513 821485.5434580097 760235.1223820378 812857.1551721533 749237.9454014243 779706.1617526809 1.1022203480273272 1.1951521967909573 1.263946398480599 1.1634360249274558 1.0612594716208246 1.0535834956227792 0.9750277215626016 1.0425172905456501 0.9609234634201583 1.0 19.572571010141495 3.1112814461697993 2.0473387127103684 1.0082515530336653 1.1921040212025567 0.7757087934153275 0.044571044700560065 0.14663473672476532 1.2567141840791314 0.014686852385272984 0.018565695344702766 1292.056324310034 -3.1112814461697993 0.18385246816889134 LASDS(ph)DAESDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LASDSDAESDSR 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 LASDS(1)DAESDSR;LASDS(1)DAESDSR 312.32 2.6250999999999998e-46 1019920000.0 750770.0 796400.0 727840.0 696080.0 765770.0 822660.0 816510.0 694080.0 865540.0 792980.0 True False 746727.9377383883 822907.6925660337 830313.5455013107 784203.6566293098 863286.2704256092 765791.4505333388 777012.291928897 745875.774066826 652239.2646417931 742371.3374956655 1.005868491983297 1.1084852701103083 1.1184612114771453 1.0563495881653546 1.1628766182404633 1.031547706457363 1.0466625699075212 1.0047205978924003 0.8785889644420725 1.0 19.501781484402397 1.7273811888206503 1.6557042532927477 0.9418597890216781 1.0861295065965932 0.5358936425507472 0.051149812467262606 0.25095220918890343 1.3586248691998202 0.03698631292570957 0.01452308987929638 53.380321952853 -1.7273811888206503 0.14426971757491514 LASLEELKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LASLEELKR 9 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 185.6 6.8415e-05 1766700000.0 2199100.0 2014550.0 2029600.0 1811930.0 1750510.0 2315400.0 2488700.0 1890930.0 3001100.0 2387900.0 False True 2187260.2899429807 2081603.0789288064 2315350.0384005555 2041320.1522186305 1973427.0724143432 2155341.8478653305 2368312.0732427565 2032040.7985479825 2261519.1176797 2235502.1776159536 0.9784201115275046 0.9311568111057389 1.035718086783416 0.913137179045646 0.88276678599298 0.9641421374788773 1.0594094235096823 0.9089862756094687 1.0116380741312863 1.0 21.092167520543224 2.47287121908504 24.998147766718716 0.9853639490850646 0.9475258923660743 0.14491371519904817 0.0515726799175625 297.40667637843126 1749283.761728338 0.018096654415588612 0.015200502045233436 297.07849771721567 -2.47287121908504 -0.03783805671899032 LASLSSHVTELEEDLDTAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LASLSSHVTELEEDLDTAR 19 0 Q13136-2;A0A2R8Y7R9;Q13136;E9PJZ7;H0YEF9 Q13136-2 PPFIA1 Liprin-alpha-1 0 ;;; 333.44 2.3690999999999995e-75 267346000.0 122943.0 191949.0 178399.0 180770.0 198823.0 184643.0 186204.0 163779.0 169633.0 178720.0 False True 122281.0885482515 198337.906429379 203516.0285280945 203655.46346523418 224141.93053375135 171879.06401286979 177196.6011516432 176001.02063291057 127829.22011574439 167313.93659011007 0.7308481949583125 1.1854237039157847 1.2163722441524596 1.2172056172711692 1.339648896570164 1.0272848007511979 1.0590665951859344 1.0519208633772232 0.7640082035061052 1.0 17.3521980956172 1.4914144201846917 2.8817911310579185 0.8838778920167325 1.1278421255187145 0.220092530511932 0.1637431894815306 0.3365095924070756 5.626974175719959 0.12280697526137041 0.04319305485001025 31.003763842636594 -1.4914144201846917 0.24396423350198204 LASPSGSTS(ph)SGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_BT-474_Trastuzumab_2h_R1 1 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LAS(0.155)PS(0.177)GS(0.201)T(0.201)S(0.229)S(0.037)GLEVVAPEGTSAPGGGPGTLDDSATICR 139.16 1.2731e-10 4072200000.0 584220.0 727840.0 612830.0 684630.0 579220.0 589600.0 660680.0 645030.0 710080.0 658020.0 True False 581074.6244329443 752065.7144114297 699111.1371861509 771304.0878033038 652980.2336940868 548842.3397691107 628720.3843573051 693165.4139959726 535090.2985845194 616024.6002407343 0.9432652920124749 1.2208371453307747 1.1348753554857183 1.2520670237875051 1.0599905157016631 0.8909422441159498 1.0206092161118394 1.1252235928972523 0.8686183934463221 1.0 19.232628438890533 3.0062678123374966 24.8400561435267 1.0005542913258114 1.1450565545796842 0.33688341431215385 0.10167798825867477 183.12490157282335 725736.2972216085 0.029300575410034287 0.03493548609184709 1014.5368178574143 -3.0062678123374966 0.14450226325387283 LASTLVHLGEYQAAVDGAR ddPTM_BT-474_Trastuzumab_2h_R1 5 LASTLVHLGEYQAAVDGAR 19 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;; 324.06 2.4638999999999994e-62 13626828000.0 2782446.0 3472553.0 3245884.0 3373287.0 3483655.0 3531026.0 3426563.0 3149450.0 3580706.0 3503960.0 False True 2767465.6198948114 3588134.827402387 3702876.2534705084 3800344.7883290877 3927277.8150091115 3286934.483761134 3260807.0569481794 3384477.95158305 2698288.9853021875 3280334.2729089134 0.8436535394427033 1.0938320698093136 1.1288106471499613 1.1585236357510122 1.1972187857326215 1.0020120543527316 0.9940471871656489 1.0317478860414384 0.8225652512264905 1.0 21.645411405294308 2.5022151064037805 21.603845866773685 0.976095754616554 1.0923257356966891 0.23642383367766506 0.10301380247423661 208.71839690741018 179690.14314829808 0.03404927697501197 0.03190609636819621 317.84479686587946 -2.5022151064037805 0.11622998108013516 LASYLDR ddPTM_BT-474_Trastuzumab_2h_R1 10 LASYLDR 7 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;;;; 186.67 0.0013852 7952810000.0 8766427.0 8467312.0 5187687.0 5680452.0 4318095.0 6761244.0 3481685.0 4473609.0 10231200.0 6752026.0 False True 8719229.531073606 8749141.361321816 5918068.237416264 6399596.640770137 4867978.802895743 6293855.116536409 3313262.5952216857 4807452.420106209 7709857.851056113 6321105.919979708 1.3793835511463153 1.38411560762929 0.9362393720868486 1.0124172449859346 0.7701150502017486 0.9956889183968322 0.5241586895022828 0.7605397664530262 1.2197007847450945 1.0 22.59174555900662 4.1935062270419525 2.917625800526301 0.86126179771683 1.4046714029414045 0.5236565158146322 0.18005080071638166 0.18377124237675713 3.1223308828144876 0.0470661105250277 0.13703200855087125 15613.714252116488 -4.1935062270419525 0.5434096052245745 LATELPDAELRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LATELPDAELRR 12 1 Q93034 Q93034 CUL5 Cullin-5 0 91.202 0.013518 290310000.0 109560.0 123140.0 126610.0 137680.0 120590.0 124160.0 144510.0 106080.0 165600.0 143230.0 False True 108970.14113326026 127238.6404602982 144435.58748615196 155110.2738833516 135946.4217070717 115577.11144120208 137519.4992181906 113996.22826332535 124790.09892631313 134088.9387746275 0.8126706209258161 0.9489122788432007 1.0771625818361856 1.1567715823603921 1.0138526186381878 0.8619436658788127 1.0255842165275773 0.8501538553819615 0.9306517007794092 1.0 17.032830706211836 2.7733169131560444 22.850334587014295 0.9260422920684088 1.0117198083610839 0.10336796837182216 0.09703605738616339 440.73824479042094 289759.21327443747 0.031098086169903668 0.0329820154253481 593.3581516586311 -2.7733169131560444 0.08567751629267506 LATELYHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LATELYHQK 9 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 99.688 0.0051679 563920000.0 422610.0 448160.0 481940.0 448100.0 425470.0 451810.0 459820.0 411420.0 639080.0 486530.0 False True 420334.714716385 463076.7346815586 549792.9629024254 504829.41405527183 479651.08254173474 420577.4381463396 437576.7499170188 442122.2495484287 481587.29723326216 455479.238860711 0.9228405574922957 1.0166802241960604 1.207064814364802 1.1083478037725722 1.053069035026678 0.9233734542947091 0.9606952690347169 0.9706748668815464 1.0573199745346356 1.0 18.797025770669837 2.904596967993501 6.703141671795982 0.9783018788084537 1.0718206825514336 0.21887485383185157 0.0741467588740754 0.3634458375843 21.75992060564542 0.02403236556395618 0.02559243680191023 802.780783393941 -2.904596967993501 0.09351880374297994 LATNTS(ph)APDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 LATNTSAPDLK 11 0 E7EVA0;P27816-4;H0Y2V1;F8W9U4;H7C4C5;B5MEG9;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 LATNT(0.001)S(0.999)APDLK;LATNT(0.001)S(0.999)APDLK;LATNT(0.01)S(0.99)APDLK;LATNT(0.001)S(0.999)APDLK 247.66 4.0838e-16 2084540000.0 9911900.0 3254390.0 2831070.0 4686860.0 2281930.0 3619820.0 3268700.0 4901450.0 9419800.0 5318590.0 True False 9858535.431715624 3362710.4038297036 3229660.047898427 5280215.995445414 2572520.259441228 3369590.3635397293 3110580.4933534 5267221.088058782 7098416.508853167 4979153.032726017 1.9799623283155476 0.6753579136306775 0.6486364300657442 1.0604646936417959 0.5166582032191144 0.6767396666446553 0.6247208055082413 1.0578548306186628 1.4256273029163924 1.0 22.247468926194713 1.5061205358344134 6.108199842015996 1.2232065011590196 0.8505105263562468 0.09212004827225584 0.4092871678766707 0.2763334480286395 23.164437237126844 0.2265853290626396 0.101221235366091 32.07159328870517 -1.5061205358344134 -0.37269597480277283 LATPLAKNLEPVS(ph)WS(ph)S(ph)LNPKFLSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LATPLAKNLEPVSWSSLNPKFLSGK 25 2 P98172 P98172 EFNB1 Ephrin-B1 3 LATPLAKNLEPVS(0.949)WS(0.684)S(0.684)LNPKFLS(0.684)GK 52.909 0.089781 420400000.0 124480.0 239880.0 272710.0 308150.0 253240.0 236330.0 219770.0 189920.0 116980.0 222930.0 True False 123809.81351102817 247864.2607894777 311105.1975621873 347161.75840466894 285488.61292892304 219993.06336098036 209138.8854970715 204092.79479421888 88151.84645169141 208702.41654002466 0.59323612808903 1.1876444216540378 1.4906640887050966 1.663429509634311 1.3679219323949343 1.054099262519993 1.0020913459665817 0.977912945033285 0.4223805738003315 1.0 17.67108777982256 1.9980827127266065 1.4002224905079028 0.7615028526620861 1.2772596749895984 0.299300858831854 0.3013853151267037 0.531576956662924 1.9401423401876803 0.21935810036354986 0.10350914706147195 99.55950134443513 -1.9980827127266065 0.5157568223275123 LATPTYGDLNHLVSATMSGVTTSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LATPTYGDLNHLVSATMSGVTTSLR 25 0 Q13509;A0A0B4J269;Q13509-2;G3V2A3 Q13509 TUBB3 Tubulin beta-3 chain 0 ; 284.12 1.7333999999999993e-53 1571100000.0 521870.0 623920.0 583030.0 580690.0 569030.0 619880.0 623850.0 601330.0 689400.0 651900.0 False True 519060.30990520766 644686.8000323948 665115.5562123944 654205.2944605136 641492.59759495 577029.1546405641 593671.9921615684 646204.298091869 519506.6074867156 610295.1838803306 0.8505069736991194 1.0563524292185924 1.089825995321656 1.0719489711535934 1.0511185644891745 0.9454919027408063 0.972762046698337 1.0588389277189176 0.851238255205669 1.0 19.219147679923687 2.746936216306453 24.589979568043812 0.9772907658389431 1.0320770106962918 0.1063199775258249 0.07932906151838233 1230.9039166476507 3613817.2203559238 0.024529390502864876 0.02563085344502886 558.3881797042537 -2.746936216306453 0.05478624485734862 LATQS(ph)NEITIPVTFESR ddPTM_BT-474_Trastuzumab_2h_R1 4 LATQSNEITIPVTFESR 17 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 LAT(0.026)QS(0.974)NEITIPVTFESR;LAT(0.188)QS(0.812)NEITIPVTFESR;LATQS(1)NEITIPVTFESR;LAT(0.003)QS(0.997)NEITIPVTFESR 290.92 5.801499999999998e-46 380489000.0 379934.0 381341.0 375724.0 398891.0 348900.0 426770.0 377795.0 376007.0 539888.0 465496.0 True False 377888.4775586354 394033.70465949783 428622.6733484476 449390.5597007847 393330.34690768074 397268.3944085198 359519.612532948 404066.55166485853 406839.83652855805 435787.64674882387 0.8671390306215817 0.9041874123765792 0.9835585669905279 1.0312145446376115 0.9025734204310423 0.9116100407442125 0.8249880766816811 0.9272097423581892 0.9335735869609205 1.0 18.73326577546427 LATQSNEITIPVTFESR ddPTM_BT-474_Trastuzumab_2h_R1 5 LATQSNEITIPVTFESR 17 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 0 ;;;; 293.8 1.0666e-45 1761050000.0 1300614.0 1495082.0 1323452.0 1328821.0 1323510.0 1537590.0 1503090.0 1370590.0 1719150.0 1560810.0 False True 1293611.6387357987 1544844.9005738453 1509782.5379489996 1497049.6023529125 1492051.1534416317 1431300.0223975363 1430379.7943385951 1472870.385515 1295488.5179297766 1461197.7695233305 0.8853090702142247 1.0572455917981602 1.0332499607096433 1.0245359208570908 1.0211151320935605 0.9795388771120644 0.9789091005834284 1.0079883888650318 0.8865935501341401 1.0 20.47872002590564 1.2839743036227251 24.999997411614622 0.9432961877193141 1.0018659126890987 0.15527520005004813 0.05100524054838269 177.5947649104674 97764.70346753909 0.03193246275803934 0.011661022953140636 19.229779466017288 -1.2839743036227251 0.05856972496978463 LATYGITVAELTGDHQLCK ddPTM_BT-474_Trastuzumab_2h_R1 1 LATYGITVAELTGDHQLCK 19 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 230.29 3.3929e-26 0.0 221480.0 203150.0 237820.0 220270.0 201160.0 236780.0 218970.0 196710.0 279850.0 254160.0 False True 220287.5762887411 209911.7249432319 271302.98883150343 248156.15941520786 226776.5336312674 220411.95592016634 208377.58455336816 211389.49907314059 210884.7172978784 237939.29120267645 0.9258142073773783 0.8822070700564931 1.140219370496518 1.0429389705285315 0.9530856904087328 0.9263369442099398 0.8757594573813887 0.8884177892800362 0.886296316308041 1.0 17.860233999847377 2.8503225278053304 2.8016021754330906 0.9023589914148543 0.9990889976351787 0.21100602697182635 0.07237445587324676 0.39047776416760394 5.942611117258277 0.024891551629235256 0.02655367147083975 708.471733977868 -2.8503225278053304 0.09673000622032435 LAVLPPELAHTTELHVLDVAGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LAVLPPELAHTTELHVLDVAGNR 23 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3 A0A0G2JNZ2 SCRIB Protein scribble homolog 0 145.02 8.3199e-08 108410000.0 61712.0 69536.0 61758.0 63853.0 67353.0 63646.0 63752.0 56836.0 66063.0 68353.0 False True 61379.74944884776 71850.46372460033 70452.98958984105 71936.78325300438 75930.00531749228 59246.30182656857 60668.072203709744 61077.3909273601 49782.65884884671 63990.65302005248 0.9591986728063776 1.1228274807898093 1.1009887579638153 1.124176420429119 1.1865796289607862 0.9258586845176092 0.948077091582398 0.9544736308319989 0.7779676640156575 1.0 15.965573568624261 2.7191648893467075 23.973545809597006 0.9237461299949036 1.1016280791463584 0.5795886173077336 0.07554323847483761 342.8909412670643 423819.9993367181 0.023952057370314177 0.022618059388844064 523.7992706241566 -2.7191648893467075 0.17788194915145483 LAVNNIAGIEEVNMIKDDGTVIHFNNPK ddPTM_BT-474_Trastuzumab_2h_R1 3 LAVNNIAGIEEVNMIKDDGTVIHFNNPK 28 1 Q96K17;E9PL10 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4;Transcription factor BTF3 0 ;; 390.53 3.934999999999998e-146 1118837000.0 986438.0 883633.0 795077.0 718113.0 749534.0 1060764.0 993813.0 935554.0 1405827.0 1066112.0 False True 981127.1274115655 913044.1902375718 907016.9306668289 809026.0321702146 844982.7120639198 987435.8814498673 945738.468455661 1005369.7901269523 1059379.7729666783 998071.8194155964 0.9830225724497936 0.9148081054649845 0.9087692017974386 0.8105889941306285 0.8466151389372808 0.9893435144056498 0.9475655459437996 1.0073120697021876 1.0614263947327756 1.0 19.928784107420903 2.1715514274019383 1.4285153610249743 1.023287309733772 0.8943025158011599 0.5242127876924547 0.05060032775422849 0.35056663680692324 1.3778557987221554 0.03320183776663083 0.018324226534659555 148.44016465170583 -2.1715514274019383 -0.12898479393261209 LAVPAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 LAVPASPR 8 0 A6NHQ4 A6NHQ4 C17orf96 Uncharacterized protein C17orf96 1 LAVPAS(1)PR;LAVPAS(1)PR;LAVPAS(1)PR 76.345 0.037806 641340000.0 622010.0 935720.0 933610.0 891390.0 736270.0 768560.0 828520.0 676230.0 858090.0 795410.0 True False 618661.1672718076 966864.8745453157 1065054.1729164077 1004239.8826037238 830029.6202858082 715431.2561956374 788441.3223462409 726693.7164263624 646625.2173169081 744646.2528152374 0.8308121674323534 1.29842172829038 1.4302820552575457 1.3486133567543743 1.1146629921896032 0.960766610307715 1.0588132544351498 0.9758911881702178 0.8683656365317796 1.0 19.506195704693845 2.972380702872865 4.052315009872076 0.9809168512031207 1.2466879546118692 0.3710816819538617 0.15495789358783438 0.23210302327288712 8.509987956247665 0.04884937654180699 0.05480667740263073 938.3842348237708 -2.972380702872865 0.26577110340874854 LAVVDEWR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAVVDEWR 8 0 Q8NFW8 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase 0 ; 157.52 0.00087392 304260000.0 683050.0 873690.0 772820.0 794140.0 766000.0 788800.0 727310.0 716450.0 888480.0 745500.0 False True 679372.5346939891 902770.243493241 881626.3385281421 894678.0425749904 863545.5595622932 734272.1126354722 692127.2367059868 769915.1370593833 669526.0090220448 697921.5517453392 0.9734224899561228 1.2935124889547014 1.2632169565811515 1.2819177747665322 1.237310350142888 1.052084021190102 0.9916977559657498 1.1031542658827558 0.9593141340136528 1.0 19.412705357192053 2.6985388558698324 5.41808617685861 1.0298030331393844 1.2216990824794751 0.5079114830949678 0.09238991886189163 0.16516528409336 12.799403488586309 0.029493147406344327 0.02824812696188077 499.50386829406517 -2.6985388558698324 0.19189604934009075 LAVYIDR ddPTM_BT-474_Trastuzumab_2h_R1 7 LAVYIDR 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;; 124.37 0.009661 4904970000.0 3269060.0 4561710.0 3766930.0 4304470.0 4172390.0 3908740.0 3331730.0 2863120.0 3581010.0 3568110.0 False True 3251459.744186707 4713543.759738073 4297281.001257491 4849415.460652743 4703719.13480694 3638538.003984248 3170561.4914554167 3076780.5530287744 2698518.0685755783 3340390.164987341 0.9733772354700454 1.4110758105875143 1.2864607991904373 1.4517512090301343 1.408134649691368 1.0892553936129903 0.9491590307886779 0.9210841850986095 0.8078451723575245 1.0 21.67158519184917 2.4701827412935735 2.929718660130034 0.9141890494400123 1.3179156309053255 0.6518508005087902 0.1329349389017621 0.15427601041697198 2.716071925789628 0.04830802179733554 0.04120257581111642 295.24512900458205 -2.4701827412935735 0.40372658146531315 LAWEQQEPGER ddPTM_BT-474_Trastuzumab_2h_R1 1 LAWEQQEPGER 11 0 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 84.65799999999999 0.036751 266380000.0 95643.0 111830.0 71991.0 96295.0 104260.0 101570.0 88357.0 102200.0 130780.0 108680.0 False True 95128.06871493632 115552.19394733755 82126.70704301057 108485.93712665112 117536.89300256467 94548.70497006211 84082.83435348196 109826.6829610845 98551.02136221755 101743.94935437085 0.9349751933022411 1.1357156340066281 0.8071900841687001 1.0662642625439882 1.155222435814709 0.929280862105638 0.8264160658893257 1.0794419094010372 0.9686180061574724 1.0 16.63458347535586 LAWVGDVFTATPAEPRPLTS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LAWVGDVFTATPAEPRPLTSPLR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 LAWVGDVFTATPAEPRPLT(0.055)S(0.945)PLR;LAWVGDVFTATPAEPRPLT(0.006)S(0.994)PLR 253.21 1.0504e-43 2576300000.0 475230.0 860690.0 734400.0 856730.0 827050.0 686260.0 764360.0 636820.0 906150.0 747960.0 True False 472671.4144830163 889337.5463519086 837797.1364807676 965191.9301574935 932369.915190593 638820.4614822757 727384.9866612429 684342.7421064365 682841.4742879141 700224.5524392277 0.6750283360337316 1.2700747828020411 1.1964692377071138 1.3784034375762084 1.331529881296919 0.9123080007076998 1.0387881774887813 0.9773189753523109 0.975174994805938 1.0 19.417458123265927 2.725946936129776 24.88497813314654 0.9840138942939575 1.1888591421362014 0.20794874866646818 0.1831607107307843 1107.0942053049337 2184133.9112448585 0.05914814716835988 0.05611907646772745 532.0432480822553 -2.725946936129776 0.2048452478422439 LCAGIMITAS(ph)HNPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LCAGIMITASHNPK 14 0 Q96G03-2;Q96G03 Q96G03-2;Q96G03 PGM2 Phosphoglucomutase-2 1 LCAGIMITAS(1)HNPK;LCAGIMIT(0.011)AS(0.989)HNPK 186.68 6.670199999999999e-07 2084620000.0 2228180.0 1446290.0 1273180.0 1257420.0 985800.0 1532310.0 1548670.0 1339950.0 2379350.0 1718090.0 True False 2216183.726454071 1494428.8883492325 1452432.6773210573 1416609.2430738234 1111335.7867056234 1426385.0163697542 1473754.915606084 1439943.873128232 1792991.07415654 1608440.0252691482 1.3778466661094346 0.9291169486404458 0.9030070468919191 0.880734886485292 0.6909401465060272 0.8868126843157054 0.9162635177270433 0.8952425023664026 1.1147391547014691 1.0 20.617230711805398 4.740510516689641 4.391494079985926 0.8985625014136223 1.412704826769146 0.6572402800408939 0.10046653686881107 0.12144208902508258 5.716040252392185 0.024237670259056657 0.19503695572372887 55018.72434486475 -4.740510516689641 0.5141423253555237 LCALRPDDSSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LCALRPDDSSSAR 13 1 K7EIX2;Q6AI08;K7ELR8;K7EKW7;K7EK31;K7ESP5 K7EIX2 HEATR6 HEAT repeat-containing protein 6 0 134.13 9.0449e-05 165100000.0 119000.0 175250.0 157060.0 201350.0 198950.0 162850.0 184930.0 144370.0 143820.0 170490.0 False True 118359.31722214285 181083.0903091379 179172.6828100075 226840.8893551194 224285.10323096334 151592.5628076657 175984.22939879584 155143.6224960057 108377.48808926539 159609.18223616751 0.7415570681078434 1.1345405557005879 1.1225712725279968 1.4212270633620048 1.405214287102213 0.9497734446340316 1.102594643573819 0.9720219120379033 0.6790178771099987 1.0 17.28418412590637 1.6849818893991118 1.8902854587697393 0.8390898884211211 1.1516375478034346 0.24137081020959017 0.20060772271885458 0.43476826151010683 3.209217048625068 0.15385767997409266 0.05979547415379181 48.41521774365228 -1.6849818893991118 0.31254765938231355 LCDDGPQLPTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 LCDDGPQLPTSPR 13 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 LCDDGPQLPTS(1)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.036)S(0.964)PR 290.87 1.6346e-40 3792470000.0 4748600.0 5487000.0 5064500.0 4892800.0 4557600.0 5555700.0 5298300.0 4521100.0 5273700.0 5183300.0 True False 4723034.0652190605 5669631.478038453 5777537.578576868 5512227.97832991 5137983.344988388 5171647.535711078 5042000.987528478 4858487.4396806285 3974067.298959524 4852497.356353609 0.9733202758029253 1.1683945526760422 1.1906317828307644 1.1359569255844073 1.0588327963251702 1.0657702943288758 1.0390528046196137 1.0012344330943688 0.8189736144330065 1.0 22.210295996281335 1.8836589239363826 1.2140989840568532 0.9186008507481699 1.1135724221591106 0.4991711337652607 0.07270038624322837 0.3675400904806 1.0018582402241734 0.056684024000506476 0.024258136444165277 76.49955765598902 -1.8836589239363826 0.19497157141094068 LCDEQLSSQSHYDFGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LCDEQLSSQSHYDFGLR 17 0 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 262.5 2.3997e-27 2375000000.0 1006380.0 1259930.0 1281900.0 1312980.0 1279010.0 1413960.0 1419800.0 1284910.0 1407220.0 1503110.0 False True 1000961.7618993282 1301866.0084062307 1462380.3775254567 1479203.1333771267 1441884.342213797 1316216.2733038203 1351118.849837294 1380796.508840774 1060429.4867819203 1407180.232922786 0.7113244902682289 0.9251593917732825 1.0392274872196132 1.0511824276444997 1.0246621637222182 0.935357278697677 0.960160481384073 0.9812506433328646 0.7535846951028822 1.0 20.424375691424792 4.712362002782917 3.609758542573652 0.9718533843012839 0.6885969660641719 0.47806752574588385 0.07990677016739742 0.2109676757394618 5.0134562261312805 0.019314201786416685 0.1545891969282343 51565.82884438949 -4.712362002782917 -0.283256418237112 LCDFGSASHVADNDITPY(ph)LVSR ddPTM_BT-474_Trastuzumab_2h_R1 11 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 LCDFGSASHVADNDIT(0.004)PY(0.995)LVSR;LCDFGSASHVADNDIT(0.002)PY(0.998)LVSR;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.003)PY(0.989)LVS(0.008)R;LCDFGSASHVADNDIT(0.008)PY(0.992)LVSR;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.025)PY(0.975)LVSR;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.029)PY(0.923)LVS(0.048)R;LCDFGSASHVADNDIT(0.001)PY(0.987)LVS(0.012)R;LCDFGSASHVADNDIT(0.004)PY(0.982)LVS(0.013)R 324.84 2.0594e-67 118894300000.0 9407890.0 12267150.0 11625450.0 12330870.0 11794950.0 11736510.0 11887720.0 11072300.0 12863740.0 11894930.0 True False 9357238.96555485 12675454.672101242 13262212.309777165 13891956.877687419 13296966.968354138 10925192.6884728 11312665.568099575 11898571.250000162 9693643.642284852 11135785.383638073 0.8402854978961376 1.138263197019352 1.19095437392889 1.247505802159138 1.1940753624698544 0.9810886535695363 1.0158839433742495 1.0684986141599728 0.8704948333979051 1.0 23.408699976187478 2.7273364441850863 24.58370008770703 1.0001650257390826 1.1338875598738898 0.2559011298164502 0.11318324932829273 879.8118495074705 1927000.6568957772 0.0375379350002014 0.035714211126035705 533.7482255068442 -2.7273364441850863 0.13372253413480717 LCDSYEIRPGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LCDSYEIRPGK 11 1 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;; 179.19 6.5759e-06 7726630000.0 6462220.0 7221340.0 6655470.0 6444430.0 6002850.0 7526920.0 7240620.0 6655160.0 9209700.0 7597700.0 False True 6427428.125540133 7461697.936507795 7592502.325617718 7260294.177237704 6767277.3658205075 7006601.7368638255 6890363.548745523 7151801.833417736 6940092.838657401 7112808.281281774 0.9036414129781477 1.0490509010546745 1.0674408792372934 1.0207352553483071 0.9514213090249356 0.9850682683663154 0.9687261734409964 1.005482159871872 0.9757176862085689 1.0 22.761987846970182 3.2752565563517275 24.980629150926415 0.982323146643719 1.0170784006854423 0.09061003004740065 0.04298805121091488 360.19064193964175 245196.14720335507 0.011826485904102577 0.01601267006527541 1884.7621704254593 -3.2752565563517275 0.034755254041723305 LCHDNNEDHQLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LCHDNNEDHQLDR 13 0 Q96PM5-2;Q96PM5;D6RAF6;H0YAI4;Q96PM5-5;Q96PM5-3;Q96PM5-4;Q96PM5-6 Q96PM5-2 RCHY1 RING finger and CHY zinc finger domain-containing protein 1 0 111.12 0.00058119 260470000.0 162370.0 205720.0 163020.0 174650.0 154910.0 157140.0 168330.0 114810.0 183090.0 167270.0 False True 161495.81796100287 212567.2658396339 185971.79900475845 196760.67209273204 174636.87027649416 146277.2816677717 160187.2348169542 123377.705193367 137969.92278030593 156594.68539294798 1.0312982050173436 1.3574360158279457 1.1875996847408554 1.2564964870869932 1.1152158187123167 0.9341139598749056 1.0229417072168914 0.7878792622097706 0.8810638907322662 1.0 17.256675724822173 2.780047420588738 1.7197512637280181 0.8940990930067673 1.2205831763738877 0.6489993504245803 0.09807816639710205 0.19747422365095704 1.1637613707950136 0.03596262491994178 0.03618725495495146 602.6253831119692 -2.780047420588738 0.3264840833671204 LCLTLHNNEGSYLAHTQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LCLTLHNNEGSYLAHTQGK 19 0 Q15428;K7EMT0 Q15428 SF3A2 Splicing factor 3A subunit 2 0 ; 245.02 8.6316e-25 1276190000.0 1080720.0 1181990.0 1154010.0 1209570.0 1032770.0 1300060.0 1329770.0 1045850.0 1497130.0 1391500.0 False True 1074901.5235992798 1221331.8226219576 1316484.5771652665 1362701.437979993 1164287.1377926217 1210189.9122120594 1265443.94488529 1123896.6377186913 1128182.3720141982 1302693.2786769131 0.825137844183098 0.9375436586749026 1.010586757999059 1.0460646878933983 0.8937538535357576 0.9289906780214563 0.9714059062088233 0.8627484735778959 0.8660383764012679 1.0 20.313066008240217 1.745950766571218 24.999999999999034 0.8966166456529857 0.948361264990188 0.04231920406461964 0.0673627869808937 3.7934700464363376 12869.256792208254 0.03159027462113643 0.017518292142033067 55.71225876181715 -1.745950766571218 0.05174461933720231 LCPGGQLPFLLYGTEVHTDTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LCPGGQLPFLLYGTEVHTDTNK 22 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 ; 336.41 5.785299999999998e-81 1623750000.0 1554740.0 1473710.0 1355130.0 1177940.0 1043600.0 1650780.0 1397190.0 1399060.0 2026980.0 1514120.0 False True 1546369.4525878516 1522761.5464734926 1545920.5249988865 1327067.0832230907 1176496.274098183 1536665.464118135 1329602.581915881 1503464.9614827314 1527457.9391404476 1417487.5652966488 1.0909227639427161 1.0742680103545121 1.090606057398013 0.9362107405473888 0.8299870156899531 1.0840768566435677 0.937999467838453 1.060654779830883 1.0775811912119204 1.0 20.434904648714927 3.759161304121054 23.746173417863368 0.9904703915807382 1.0841658804843526 0.2664036143475639 0.07280415410013703 628.4996464186169 724459.7788342704 0.019478248474837936 0.03505196860760677 5743.297381186168 -3.759161304121054 0.09369548890361434 LCPSCPASS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 LCPSCPASSPK 11 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 LCPSCPAS(0.006)S(0.994)PK;LCPS(0.013)CPAS(0.072)S(0.915)PK;LCPSCPAS(0.002)S(0.998)PK;LCPSCPAS(0.07)S(0.93)PK 224.8 2.0718e-05 255180000.0 1094180.0 886960.0 772810.0 782330.0 790230.0 1050970.0 983960.0 1029910.0 1681930.0 1053900.0 True False 1088289.0564548275 916481.9274213578 881614.9306150617 881372.8977858985 890861.1064398303 978318.917617269 936362.0957077781 1106767.1139770125 1267440.8882073285 986639.1997108146 1.1030263715183894 0.9288926769684197 0.8935535207535483 0.8933082103814953 0.9029249057821166 0.9915670469042945 0.9490420570987117 1.1217546538809804 1.2846042287584127 1.0 19.912163081964774 1.6819937400016465 3.9867824765723823 1.159907621070611 0.9453294227650092 0.4800845706102429 0.08707373172750262 0.1334623589630731 4.965372225625285 0.04722218777483209 0.022157500297102083 48.08324175952936 -1.6819937400016465 -0.21457819830560176 LCQFHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LCQFHR 6 0 O43684;O43684-2;J3QT28 O43684 BUB3 Mitotic checkpoint protein BUB3 0 69.39 0.09363 333120000.0 370050.0 956250.0 919740.0 1151800.0 1114900.0 756160.0 781290.0 587370.0 356570.0 702750.0 False True 368057.69191642007 988078.2031846681 1049231.3974766084 1297617.761903286 1256875.9064699733 703888.4390091773 743496.0178823617 631202.5320044248 268698.10129320895 657899.8933454559 0.5594433068606033 1.5018670973789614 1.594819224154622 1.9723635389342151 1.910436404053347 1.0699020415246874 1.130105089547355 0.9594203288204326 0.40841791283300694 1.0 19.327508553288954 2.1133145810276064 1.54251179052525 0.7728126623161331 1.5186236641652315 0.35673952896130623 0.40131710157374445 0.4423079620501963 2.0072749104042713 0.2560714934049281 0.1364859742761451 129.81192226358777 -2.1133145810276064 0.7458110018490984 LCS(ph)SSSSDTSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LCS(0.838)S(0.023)S(0.046)S(0.046)S(0.046)DTSSR;LCS(0.361)S(0.361)S(0.266)S(0.009)S(0.004)DTSSR 129.19 0.00025037 399520000.0 201922.0 240899.0 199032.0 217509.0 215264.0 229982.0 226227.0 208555.0 271434.0 221408.0 True False 200834.87438764313 248917.17758847933 227053.97558284333 245045.61709829955 242676.5944303099 214083.88565939543 215283.5357389357 224118.43312083188 204542.72772925653 207277.55188307422 0.9689176303130721 1.2008882550334932 1.0954103496500434 1.1822101084855074 1.1707808791914156 1.0328368109063768 1.0386244616608444 1.0812479744418133 0.9868059800544131 1.0 17.661204355763108 2.723777151503296 24.509158504253975 1.037755675740633 1.129618353798005 0.34378181715415224 0.06517089055901884 722.0708956734188 1197102.661095159 0.020105125025971417 0.01902970266938656 529.3917286641029 -2.723777151503296 0.09186267805737192 LCSDLMNCLHER ddPTM_BT-474_Trastuzumab_2h_R1 2 LCSDLMNCLHER 12 0 Q9UNF0-2;Q9UNF0;A0A0U1RR22;B0QYG7;B0QYG8 Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 0 ; 193.28 3.0059e-06 723910000.0 715590.0 861210.0 870220.0 813070.0 713680.0 833170.0 836270.0 674370.0 960160.0 809840.0 False True 711737.3429495228 889874.8542375623 992739.411912165 916004.578634054 804562.9176872274 775574.9189712184 795816.4252383655 724694.9137814747 723541.4334848349 758155.3178610945 0.9387751113551166 1.1737368759056845 1.3094142961535618 1.2082017458088712 1.0612112040011246 1.0229762961490108 1.0496746596509017 0.9558660299659729 0.9543445998981948 1.0 19.532133907732835 2.997867206095778 2.9216762131405525 0.9953260278988884 1.1687270148024844 0.4069666616486326 0.09057540982511333 0.2610445288310101 4.539871897744503 0.029969379714000325 0.03464384070693906 995.1010994972754 -2.997867206095778 0.17340098690359607 LCSS(ph)SSSDTSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LCS(0.064)S(0.924)S(0.01)S(0.002)SDTSSR;LCS(0.044)S(0.799)S(0.11)S(0.044)S(0.003)DTSSR 283.44 3.4204e-28 821020000.0 727490.0 648670.0 569620.0 606840.0 614850.0 645200.0 641110.0 640020.0 771180.0 663410.0 True False 723573.2746717371 670260.5888207045 649817.5447742036 683665.8817792933 693147.5029985313 600598.8426374323 610097.0600219658 687781.5423557087 581133.0222825722 621070.6058261236 1.1650418936012412 1.0792019176775405 1.0462861044757414 1.1007860867443693 1.116052662122906 0.9670379454499209 0.9823312426941196 1.1074128060542308 0.9356955824846549 1.0 19.24439776363121 2.749673318180669 24.954344870337586 1.0121923110955455 1.0971322304162072 0.49602075741005236 0.05088008271237332 765.9702902679388 1720038.7648118827 0.016181387621782287 0.017016994073946964 561.9184839641285 -2.749673318180669 0.0849399193206617 LCVQNSHQEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 LCVQNSHQEAR 11 0 Q9H0L4 Q9H0L4 CSTF2T Cleavage stimulation factor subunit 2 tau variant 0 ;; 208.17 2.0466000000000003e-08 1298680000.0 1132600.0 994490.0 968960.0 857400.0 790940.0 1026160.0 1075430.0 927430.0 1652170.0 1093200.0 False True 1126502.207443691 1027590.9984680988 1105381.1456486979 965946.7520887965 891661.520731331 955223.9745208132 1023407.3423584455 996639.5359941175 1245014.8414437587 1023431.0400643931 1.1007113946561684 1.0040647178372115 1.0800738910353438 0.9438317915665527 0.8712472905602205 0.933354507657606 0.9999768448434532 0.973821876588197 1.216510729795164 1.0 19.964982464544455 -0.4529736819050125 6.704601289908037 0.9999980367939026 1.003829758083716 0.0 0.0935373806285946 0.0 0.0 0.09000720669860726 0.02121490207074815 0.3523922252420901 0.4529736819050125 0.003831721289813461 LCWFLDEAAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LCWFLDEAAAR 11 0 M0R1L2;O95336 M0R1L2 PGLS 6-phosphogluconolactonase 0 ; 129.38 0.00057264 267570000.0 367210.0 429170.0 391910.0 395580.0 372550.0 415550.0 377590.0 400950.0 474690.0 459850.0 False True 365232.9821608662 443454.6640112565 447087.5214572138 445660.3874402684 419992.03422314895 386824.0065994808 359324.52916612447 430870.92498284637 357709.0100201176 430501.97930260806 0.8483886247225287 1.0300873987377042 1.0385260531937008 1.0352110068395417 0.975586767112001 0.8985417610068056 0.8346640583353704 1.0008570127385616 0.8309114178745207 1.0 18.715660345098403 2.8582245346742527 4.744249518241997 0.9141217854936157 0.9956583999555052 0.1915424685472633 0.07398417615700655 0.3582777733200282 12.41447941274671 0.02245271025376028 0.02394283166187211 721.4803954929189 -2.8582245346742527 0.08153661446188953 LCYVALDFEQEMATAASS(ph)SSLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L4N8;Q6S8J3 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E 1 LCYVALDFEQEMATAAS(0.003)S(0.898)S(0.097)S(0.003)LEK;LCYVALDFEQEMATAAS(0.017)S(0.818)S(0.141)S(0.025)LEK 240.75 1.8538999999999998e-37 107282000.0 219102.0 166575.0 148465.0 154549.0 125867.0 192204.0 176522.0 156143.0 262262.0 185594.0 True False 217922.3791765206 172119.348178286 169367.5815190864 174114.88755373404 141895.41637784193 178917.38987954895 167982.95648047508 167795.18353808823 197631.04423075292 173749.23202498234 1.2542350641595175 0.9906193320816405 0.9747817561273254 1.0021045015537053 0.8166678765949288 1.0297449248801487 0.9668126559334769 0.9657319435746454 1.1374498864106448 1.0 17.406647075546637 4.738718394371668 5.3511913268383555 0.979896716672502 1.265206488550687 0.5362015756985168 0.07432845291483751 0.11125743513205284 11.610522477632246 0.017122986322511993 0.11674120145383858 54792.15659023351 -4.738718394371668 0.28530977187818507 LCYVALDFEQEMATAASSS(ph)SLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L4N8;Q6S8J3 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E 1 LCYVALDFEQEMATAAS(0.005)S(0.14)S(0.715)S(0.14)LEK;LCYVALDFEQEMATAAS(0.001)S(0.201)S(0.5)S(0.299)LEK 173.86 2.1571e-12 68799000.0 80628.0 55301.0 56567.0 58727.0 59499.0 72333.0 70987.0 68630.0 107894.0 79575.0 True False 80193.90780661303 57141.66035483954 64531.141910821854 66161.83217858504 67075.84497179733 67332.78996356705 67553.08761332567 73751.51909607855 81304.96940552909 74496.45537241502 1.0764795104104738 0.7670386472642602 0.8662310386208901 0.8881205400691297 0.9003897519214661 0.9038388420893838 0.9067959982206029 0.9900003795803108 1.091393798524744 1.0 16.18488416165717 1.6180932106789125 2.7958995257316825 1.0460315309709012 0.89320007657521 0.38659776242739463 0.07416263833241428 0.20801599976513882 3.7774522756236806 0.04678087938524644 0.018841536134242873 41.50431119193737 -1.6180932106789125 -0.15283145439569124 LCYVALDFEQEMATAASSSSLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L4N8;Q6S8J3 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E 0 ;; 211.03 5.5729e-25 289826000.0 241414.0 263160.0 240838.0 238415.0 241840.0 284656.0 275980.0 270014.0 354181.0 293995.0 False True 240114.25384761696 271919.1215164208 274745.8969985774 268598.3145547592 272636.89050201693 264978.40072814765 262629.7930540186 290163.81578331016 266897.83833224914 275231.9873982174 0.8724067871522848 0.9879633689633488 0.9982338884217818 0.9758978856121825 0.9905712380282102 0.9627456577013543 0.9542124646799669 1.0542517914659708 0.9697195476995556 1.0 18.07028862390639 4.7383349158904515 6.435643089134759 0.9905962156230889 0.8699617835261398 0.63356359113244 0.026363168952361286 0.07797514774339763 19.105819228183588 0.006603002527173831 0.041119502237144875 54743.796917119114 -4.7383349158904515 -0.12063443209694902 LDADAVS(ph)PTVSQLSAVFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDADAVSPTVSQLSAVFEK 19 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 LDADAVS(0.922)PT(0.076)VS(0.001)QLSAVFEK 121.26 3.7236e-05 25321000.0 85058.0 80471.0 66768.0 60367.0 69220.0 78985.0 75517.0 70179.0 80294.0 70995.0 True False 84600.05717883217 83149.42858925328 76168.35404214037 68009.456010432 78034.75670091633 73524.9528606907 71863.95420704517 75416.11334174123 60506.61958447698 66464.03831812248 1.2728696498082726 1.251043883178872 1.1460085178328965 1.0232519379113343 1.174089909003301 1.1062366163905353 1.0812456784987488 1.1346905070794928 0.910366284017667 1.0 16.020286332593404 7.999999999999999 0.23159813006337973 1.0091269812074293 2.5554467210068434 0.6068157691054947 0.06658294484298125 36.94115068328905 0.48588440879292605 0.09703509283796302 21.717868692040128 99999999.99999979 -7.999999999999999 1.5463197397994142 LDADYPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDADYPLR 8 0 O43583;F8VVL1 O43583 DENR Density-regulated protein 0 ;; 95.909 0.021673 683210000.0 2143430.0 2563730.0 2324460.0 2366070.0 2211680.0 2514330.0 2481140.0 2198480.0 2930780.0 2533300.0 False True 2131890.011037463 2649062.203242491 2651723.7634314857 2665614.219401375 2493324.338345603 2340520.285196179 2361117.7793247653 2362541.741255236 2208528.5394399757 2371622.6251327517 0.8989162054895349 1.1169830204728333 1.1181052732970345 1.1239622152163298 1.051315800382044 0.9868856285958093 0.9955706082001987 0.9961710249424663 0.9312310129088742 1.0 21.17744303445139 2.8017015676504706 3.7655438785492668 0.9835267239765464 1.0734543380172088 0.2799287330359851 0.06349262943557125 0.2953792367518472 8.38821577276478 0.020204217126755308 0.02111773803158734 633.4342872408308 -2.8017015676504706 0.0899276140406624 LDAENAIVHMGGQWLGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDAENAIVHMGGQWLGGR 18 0 E7ETJ9;Q01085;Q01085-2 E7ETJ9 TIAL1 Nucleolysin TIAR 0 139.88 1.3114e-07 580370000.0 265250.0 276050.0 260700.0 251410.0 244910.0 268120.0 286150.0 248010.0 321620.0 289670.0 False True 263821.9234720453 285238.15737425146 297404.2939549785 283238.48022235214 276097.8368047013 249585.49548659095 272307.8313008459 266517.7655692619 242361.06048720263 271183.0126010358 0.9728556407040873 1.0518290015233867 1.096692197281986 1.0444550988120054 1.0181236433526024 0.9203581488851622 1.0041478213882995 0.9827966841026381 0.8937177080622081 1.0 18.04890728269046 2.9531127545169626 5.424664514323801 0.9647581951400911 1.0447548307709993 0.4523330765870094 0.042516548459687366 0.19127992763864474 13.407742568484169 0.013069396258988713 0.01422120736453071 897.6618213783565 -2.9531127545169626 0.0799966356309082 LDAFIEALHQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDAFIEALHQEK 12 0 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;A0A2R8YFD1 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 ; 225.33 1.7936e-11 190830000.0 793990.0 851340.0 862080.0 682650.0 852080.0 1340520.0 969750.0 877850.0 1431150.0 1021890.0 False True 789715.2460605816 879676.3372541034 983453.3706663118 769073.4200063185 960587.3373261583 1247853.007644655 922839.4876952481 943359.6246319778 1078462.2589274938 956672.1053159549 0.8254816270615173 0.9195170762960393 1.0279941948777862 0.8039049280655265 1.004092553747985 1.3043685508448408 0.9646350955225844 0.9860845940735562 1.1273060570437725 1.0 19.867665007200902 3.0074955999960244 24.833615983858298 1.0683904036003424 0.9053876017081602 0.39204691267348657 0.10643735918988104 193.57140138777262 641313.0308308717 0.03137379205445136 0.03742528686835545 1017.4090583669778 -3.0074955999960244 -0.1630028018921822 LDAGNQLALIEELHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDAGNQLALIEELHK 15 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 89.50200000000002 0.006174499999999999 0.0 80983.0 63645.0 61696.0 66041.0 67564.0 85664.0 78335.0 69029.0 89394.0 80936.0 False True 80546.99652605715 65763.38535078507 70382.26052875457 74401.78382866376 76167.87491679723 79742.24931136548 74545.63678123977 74180.29450215967 67364.04651822965 75770.59518720419 1.0630376642423363 0.8679275276682914 0.9288862038745134 0.9819347946897005 1.0052431913542645 1.0524168262681406 0.983833327388574 0.9790116379432494 0.8890526245939506 1.0 16.209350460029373 5.07075911767746 18.8943145022603 0.96910115380181 3.1038649429630114 0.2323963522479463 0.05286166447496239 263.6288154829016 79163.01880349478 0.01270709909199533 2915.4205030316525 117695.29930645469 -5.07075911767746 2.1347637891612017 LDALLADEER ddPTM_BT-474_Trastuzumab_2h_R1 1 LDALLADEER 10 0 Q15628-2;Q15628 Q15628-2 TRADD Tumor necrosis factor receptor type 1-associated DEATH domain protein 0 97.456 0.014066 18024000.0 16030.0 21109.0 16007.0 18014.0 17408.0 19500.0 20017.0 15417.0 22693.0 19129.0 False True 15943.696261100435 21811.60030434003 18260.646464661837 20294.570552982965 19624.805614700235 18152.010898062526 19048.70123763423 16567.494825939746 17100.614220620908 17908.17084283916 0.8903028902851767 1.217969188241339 1.0196823910669592 1.1332575912462908 1.0958576276117835 1.0136161340744003 1.0636877101968865 0.925136071759361 0.9549056891792405 1.0 14.128330366190408 1.7669479361631735 9.89852380261723 0.955361177194621 1.0686439015102538 0.24183468995955504 0.08208494351769857 0.268474525863058 84.39742837109323 0.03542097628184319 0.019572994067661727 58.47199828839754 -1.7669479361631735 0.1132827243156328 LDALVAEEHLTVDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDALVAEEHLTVDAR 15 0 A6NFX8;Q9UKK9 A6NFX8 NUDT5 ADP-sugar pyrophosphatase 0 ;;; 232.8 1.1638e-14 979000000.0 1492560.0 1653240.0 1741184.0 1858377.0 1985046.0 2081996.0 1781524.0 1734617.0 2661600.0 1916777.0 False True 1484524.2227990064 1708267.0939953162 1986327.5725573655 2093647.3376563147 2237829.8418105626 1938072.5170114164 1695344.878037424 1864062.9287466498 2005684.3436127699 1794446.6508246493 0.8272880233674175 0.9519742998267857 1.106930413141308 1.166737019846294 1.2470863041719038 1.0800390839821083 0.9447730737820027 1.03879540129544 1.1177174549552895 1.0 20.775107601569935 4.472836249593462 2.9408948240860426 1.0869795439802898 0.8337214550541262 0.5206901333343221 0.08016381558182918 0.2424021171330848 3.9302520996633072 0.022588540793877763 0.10739291358787814 29705.457785127615 -4.472836249593462 -0.25325808892616364 LDAMFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDAMFR 6 0 A0A0C4DGQ5;K7ELJ7;P04632;K7EKD8;K7EIV0;Q96L46;K7EMQ1 A0A0C4DGQ5 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 0 ;;; 126.04 0.041095 1864200000.0 1521050.0 1628650.0 1575590.0 1473980.0 1350550.0 1576220.0 1606480.0 1312950.0 1790610.0 1629060.0 False True 1512860.8358045437 1682858.6307102835 1797419.376726214 1660585.7168694262 1522534.5371629957 1467259.6214227742 1528768.4250504398 1410928.9960250112 1349338.158444719 1525091.996091564 0.991980050830792 1.103447290408078 1.1785645596020162 1.0888429820136092 0.9983230789125361 0.9620794189353823 1.002410627665936 0.92514353208913 0.8847585338476244 1.0 20.540464840394442 3.1126366387471993 2.7139647696021596 0.9528348203120549 1.0992712943540244 0.5938620663384906 0.05295156387157208 0.1855911432495505 2.7706533728160663 0.01699495655119171 0.021057576552412235 1296.09441363578 -3.1126366387471993 0.14643647404196947 LDAPVDYFYRPETQHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDAPVDYFYRPETQHR 16 1 Q5T7U0;Q5T7U4;Q9Y5Q8-2;Q9Y5Q8;Q9Y5Q8-3;Q5T7U1 Q5T7U0 GTF3C5 General transcription factor 3C polypeptide 5 0 ;;; 169.92 3.2769000000000005e-09 1157720000.0 379339.0 481120.0 429089.0 453480.0 435891.0 485419.0 456551.0 445457.0 505698.0 483744.0 False True 377296.6809725252 497133.7883568184 489501.0014915528 510890.5215036482 491399.1351216281 451863.12708341563 434465.8839358123 478699.26332481246 381075.5039060301 452871.04376592475 0.8331216715360109 1.0977380762144107 1.080883859168883 1.1281147879432802 1.0850751927862656 0.9977743847914682 0.959358938745429 1.0570321726558378 0.841465819358052 1.0 18.78874077193743 2.572024897728591 5.326441207052905 0.9782515161009075 1.0541932444430473 0.13725849996594686 0.09147427192762658 0.47299099449484877 20.807549859602304 0.029848645021131284 0.02787651582330999 373.271556519167 -2.572024897728591 0.07594172834213975 LDAVSEVLHSESSVFGQIENHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDAVSEVLHSESSVFGQIENHLR 23 0 A0A590UKC9;A0A590UJN8;A0A590UJW0;P20585 A0A590UKC9 MSH3 DNA mismatch repair protein Msh3 0 ; 214.55 1.6429999999999998e-32 210807000.0 53469.0 62958.0 68678.0 70243.0 55190.0 65750.0 73982.0 54852.0 66013.0 73673.0 False True 53181.1288449644 65053.518971085294 78347.26544012273 79135.75659782288 62218.11936324138 61204.857258851895 70403.2080213146 58945.33477281227 49744.9806788811 68971.1260653713 0.7710636592268911 0.943199316615871 1.1359429649715256 1.14737515700146 0.9020893656900806 0.8873982599739132 1.0207634997083557 0.8546378482633948 0.7212435625849065 1.0 16.073704900852796 1.644425461502439 5.757126478669825 0.8376836388589185 0.9781201420793043 0.14428709236704196 0.1238974254257874 0.23583891085956735 16.566850798319855 0.06807477572067211 0.033115638553136345 44.09866695399525 -1.644425461502439 0.1404365032203858 LDDAHSLGSGAGEGYEPIS(ph)DDELDEILAGDAEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDDAHSLGSGAGEGYEPISDDELDEILAGDAEKR 34 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 LDDAHSLGSGAGEGY(0.008)EPIS(0.992)DDELDEILAGDAEKR 51.783 0.030496 25603000.0 11273.0 18160.0 14057.0 16251.0 14165.0 18621.0 20330.0 15431.0 24546.0 19611.0 True False 11212.30742054804 18764.444622048184 16036.103414365673 18308.37493374744 15968.828787467199 17333.774099119095 19346.560231858122 16582.539577030297 18496.967199548795 18359.409190178198 0.6107117775089588 1.0220614632897158 0.8734542189377514 0.9972202669540118 0.8697899056582988 0.9441357246066616 1.0537681268201171 0.9032174949236123 1.007492507408364 1.0 14.164232012804742 4.745172521982308 24.996143208928842 0.9569622122737846 0.6107116204149196 0.7497054360159926 0.061041943653320996 350.09348963807093 1323485.2483731573 0.013440059560403473 0.12946470611274286 55612.51321837688 -4.745172521982308 -0.3462505918588651 LDDDSER ddPTM_BT-474_Trastuzumab_2h_R1 2 LDDDSER 7 0 Q86VP6;Q86VP6-2;F5H6I6 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 147.34 0.005021 1413070000.0 2371160.0 2285270.0 2074250.0 2052440.0 2070760.0 2068090.0 2381090.0 2086960.0 2649600.0 2350580.0 False True 2358393.9380206396 2361333.830475115 2366286.370295795 2312278.6935585835 2334459.011643883 1925127.80606021 2265907.580052878 2242699.5525681498 1996641.5828210101 2200563.971967216 1.0717225075317078 1.073058479806055 1.075309057332439 1.0507664048918781 1.0608457838001273 0.874833829229342 1.0296940279483204 1.0191476281251965 0.9073317605195965 1.0 21.069441881842067 2.9545104128289057 24.98821544340907 0.9760555437732626 1.0670343788256513 0.543636708873462 0.04546155651366021 364.1487298562945 200033.11328147774 0.013908867702356458 0.014753164982380055 900.5553545893698 -2.9545104128289057 0.09097883505238868 LDDFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDDFFK 6 0 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ; 101.52 0.084748 751150000.0 1435270.0 1449510.0 1237400.0 1192400.0 1198660.0 1667880.0 1590640.0 1416820.0 2146800.0 1545780.0 False True 1427542.6657934894 1497756.064102703 1411615.164326392 1343357.7177404726 1351302.2459855562 1552583.3813672073 1513694.6663651143 1522550.3028661828 1617749.9056461866 1447126.9969911587 0.9864667501619494 1.0349859184555408 0.975460458730573 0.928292900715389 0.93378276322338 1.072872930016033 1.0459998808068414 1.0521193413099492 1.1179045854370653 1.0 20.464760104801066 2.7278054286409428 24.814053985916058 1.0592215808633725 0.9730947580412389 0.5529027751117264 0.0386394482014644 519.8640579165514 1199413.6861332287 0.012993177789280006 0.012366262007063913 534.3249190577801 -2.7278054286409428 -0.08612682282213358 LDDFLDLNHK ddPTM_BT-474_Trastuzumab_2h_R1 4 LDDFLDLNHK 10 0 Q8WVY7 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 0 ;;; 196.27 3.3647e-07 1050380000.0 1511180.0 1433880.0 1245910.0 1167150.0 1299130.0 1577910.0 1525590.0 1429010.0 2030400.0 1519890.0 False True 1503043.9747878811 1481605.8290012365 1421323.2983561452 1314911.0703294144 1464566.5049532116 1468832.7957006053 1451791.383380246 1535649.9825657497 1530035.1259660972 1422889.3189567048 1.0563323195720855 1.0412656903543165 0.9988994080005408 0.9241133887304303 1.029290532609427 1.0322888619176558 1.020312236544676 1.0792476702908442 1.0753015751695671 1.0 20.440392013899373 2.204942471092527 1.7755983078761708 1.0574167109138033 1.0080533116187331 0.13410116965002639 0.039798521562430196 0.5865773670849674 3.6634560832038376 0.022155807288904327 0.013478453805629467 160.30330305265548 -2.204942471092527 -0.049363399295070165 LDDHALTGASDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDDHALTGASDSR 13 0 Q12788;J3KNP2 Q12788 TBL3 Transducin beta-like protein 3 0 199.96 5.0945e-07 0.0 108210.0 150380.0 146500.0 148380.0 140740.0 163780.0 146010.0 135360.0 193290.0 157380.0 False True 107627.40938326118 155385.30739337034 167125.92659917258 167164.8927862557 158662.4047686645 152458.27409665025 138946.9384876342 145461.25054415286 145656.26945330354 147335.8736602033 0.7304901834802252 1.0546332236216363 1.1343193103440004 1.1345837821668843 1.0768755824842988 1.0347668243258976 0.9430625076964197 0.9872765330704603 0.9886001680027134 1.0 17.168749218120027 -0.36610616750868363 7.805049073951854 1.0000006471052634 1.0158830045224525 0.0 0.11045808086573433 0.0 0.0 0.10732314788355433 0.025296308548915986 0.43042137693903465 0.36610616750868363 0.01588235741718913 LDDIEEFENIRK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDDIEEFENIRK 12 1 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 0 ; 157.52 0.0001188 178660000.0 288026.0 292553.0 257546.0 263326.0 282323.0 345182.0 333125.0 321981.0 452562.0 344676.0 False True 286475.30001869664 302290.4497529771 293806.23817003815 296663.0446005771 318275.1605904764 321320.38081102644 317010.47108891996 346008.8572063892 341034.15912010893 322678.48258802993 0.8878041625863394 0.9368162615879082 0.9105231802677913 0.9193765949969857 0.9863538406334478 0.9957911610154142 0.9824344919015054 1.0723022323373994 1.056885344150803 1.0 18.299737851150564 2.8137085208743735 0.8715669429622644 1.044920511669644 0.9067806145300343 0.7893192822646817 0.02665615943909196 0.2485912756283647 0.40964489514716834 0.015922967692218643 0.016229249463984467 651.1911968170747 -2.8137085208743735 -0.13813989713960972 LDDIHPFYADLMNILYDKDHYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDDIHPFYADLMNILYDKDHYK 22 1 Q9BZE4-2;Q9BZE4;Q5T3R7 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 0 228.62 2.25e-26 345270000.0 229080.0 230560.0 186180.0 192690.0 208120.0 290450.0 262410.0 225800.0 415580.0 295760.0 False True 227846.65873318055 238234.05022353656 212392.52569443008 217084.53424304936 234622.84837611514 270371.87514575676 249716.2257964528 242650.34258916747 313165.87748669815 276884.3435871244 0.8228946995751183 0.8604099716767621 0.7670803012652057 0.7840260356748614 0.8473676963330675 0.9764794630241763 0.901879183782297 0.8763599250342414 1.1310349781050637 1.0 18.078923953321127 2.0332839622108017 0.6607038319744035 1.0305441030164377 0.8075279809466384 0.6028475704225059 0.06642072149452379 0.5514480702662226 0.46958581422290246 0.061837228053407196 0.03700248344499782 107.96524191568297 -2.0332839622108017 -0.22301612206979937 LDDLSVLDLSHNQLTECPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDDLSVLDLSHNQLTECPR 19 0 Q13045-3;Q13045;Q13045-2;J3KS54;J3QQQ2;K7EP37;K7EP27 Q13045-3 FLII Protein flightless-1 homolog 0 ; 386.62 7.166299999999997e-127 321970000.0 281950.0 277430.0 277200.0 262880.0 257830.0 306840.0 255860.0 247900.0 293790.0 269080.0 False True 280432.0125275897 286664.0898400235 316227.3505344072 296160.58104630606 290663.12222186127 285628.87302366685 243483.07431988284 266399.5568106934 221389.3910843088 251907.0840290219 1.113235912394117 1.1379754997560818 1.255333297804261 1.175673888600075 1.1538505292228078 1.1338659812788747 0.9665590598946057 1.0575310251298922 0.8788533753929794 1.0 17.94253216796524 2.326495431829878 4.00577022767829 0.9877085157310357 1.1689082004398288 0.7372905662724332 0.05434476822896055 0.12063430006792576 3.6664117618883316 0.020156980580417577 0.016306387015138576 212.07790853449816 -2.326495431829878 0.1811996847087931 LDDLVNWAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDDLVNWAR 9 0 F5H5N1;A0A087WXF6;A0A087WTI3;F5GXJ1;O75251-2;O75251 F5H5N1 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial 0 90.64 0.026272000000000004 93677000.0 179110.0 181810.0 205120.0 170570.0 163070.0 319880.0 189350.0 146100.0 178780.0 220510.0 False True 178145.69166099164 187861.435943534 233999.1130649987 192164.14451106405 183835.99790838498 297767.44851652515 180190.4171127561 157002.7238807677 134722.06452926478 206436.8630118912 0.8629548476074744 0.9100188464533719 1.1335141875873198 0.9308615801819997 0.8905192378252504 1.442414131721102 0.8728596941641027 0.7605362801493647 0.6526066254044197 1.0 17.655341087329067 2.010475783203666 24.981523425608614 0.7875048230739597 1.0287931576935172 0.249817221142572 0.17788979268378152 266.02895737267534 634394.6085520161 0.06618350436720072 0.04883085760409045 102.44146560921416 -2.010475783203666 0.24128833461955745 LDDLVRPYVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDDLVRPYVHK 11 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 148.18 2.0999e-05 2346400000.0 2915600.0 3186800.0 2967300.0 2700100.0 2718500.0 3224100.0 3381400.0 3014000.0 3983000.0 3385700.0 False True 2899902.733553611 3292870.711538722 3385070.0477660405 3041932.3831525105 3064684.8611881086 3001225.5557150426 3217828.7637975914 3238919.9847818874 3001443.0194656067 3169621.7273563985 0.9149049896159865 1.0388844457742654 1.0679728809750857 0.9597146425701762 0.9668929370143446 0.9468718395674913 1.0152090818993091 1.0218632579488551 0.9469404483067259 1.0 21.5958792441903 -0.5378154397990413 6.322853291425355 0.9999997744494032 0.9915438566501849 0.0 0.045870657193335815 0.0 0.0 0.04419108182665779 0.010415937875866447 0.2898575120624286 0.5378154397990413 -0.008455917799218393 LDDPSCPRPECYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDDPSCPRPECYR 13 1 P41091;H7BZU1 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 0 ;;; 138.42 4.4948e-05 5094400000.0 4989460.0 5852300.0 5537330.0 5465530.0 5128380.0 5873710.0 5465580.0 5451830.0 6973250.0 5715680.0 False True 4962597.301741122 6047090.267709943 6316937.93266483 6157465.5376065895 5781448.794710273 5467674.252926097 5201189.014856822 5858673.238431802 5254785.974262754 5350900.4089601645 0.9274321931746622 1.1301070484481448 1.1805373768659608 1.1507344684075635 1.0804627918376408 1.0218232138595578 0.9720212706906955 1.0948948383754935 0.9820377081702988 1.0 22.351350247051272 2.8491953427017878 3.961216665290773 1.022680247550784 1.1063138402641663 0.2337457705273449 0.07079274871242514 0.3634946205494008 10.017291748516755 0.02270420217757776 0.024194329460044427 706.635322550729 -2.8491953427017878 0.08363359271338244 LDDTVHVVIATPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 LDDTVHVVIATPGR 14 0 P26196 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 ;;;; 207.97 8.6887e-09 3697180000.0 3353570.0 3915070.0 3655320.0 3760310.0 3781300.0 4001520.0 3959590.0 3513540.0 4532660.0 4013480.0 False True 3335514.751736655 4045380.738240204 4169957.2833889984 4236364.860446726 4262826.141478972 3724904.340964876 3768049.5045973016 3775738.1961946064 3415646.677532259 3757336.2702869023 0.8877338922560588 1.076661881511954 1.1098174300674422 1.1274915407353854 1.1345341047032427 0.99136837190259 1.0028512844046245 1.0048975988796176 0.909060683373822 1.0 21.84127880794575 2.6218466461636214 7.985950267711329 0.9849511032708285 1.073375316265958 0.2691273119770249 0.07013226383013205 0.40326559208033164 25.271850228638094 0.02333698422071676 0.021976634213161057 418.645710920212 -2.6218466461636214 0.08842421299512959 LDDYQER ddPTM_BT-474_Trastuzumab_2h_R1 1 LDDYQER 7 0 Q14444-2;Q14444;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 101.41 0.02112 631380000.0 1013500.0 1041500.0 979570.0 877350.0 870220.0 1146400.0 1079300.0 893920.0 1374300.0 1099900.0 False True 1008043.4286104364 1076165.6978999546 1117484.9414249244 988422.4200432786 981037.358801956 1067152.066335328 1027090.1356736078 960628.8496337844 1035622.1796765218 1029703.4403282342 0.9789648059145133 1.045121979544819 1.0852493034972366 0.9599097966771902 0.9527377693224323 1.0363683605788054 0.9974620802919787 0.932917976196689 1.0057480038586653 1.0 19.973797463264095 3.7200115432117666 24.994227172350598 0.979731774250499 1.0373130309467038 0.2961919747436954 0.03699488395540987 914.399348776175 1232120.4894814303 0.010137127844840032 0.015732390041494855 5248.21409411946 -3.7200115432117666 0.05758125669620484 LDEDSEHPPMILR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDEDSEHPPMILR 13 0 Q9Y4P8-4;Q9Y4P8;Q9Y4P8-2;Q9Y4P8-6;Q9Y4P8-3;Q9Y4P8-5 Q9Y4P8-4;Q9Y4P8-2 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 0 131.69 0.00012749 226320000.0 311750.0 392370.0 353510.0 364200.0 354380.0 352240.0 338420.0 309520.0 327940.0 358570.0 False True 310071.5726386813 405429.798257326 403281.13523599715 410307.68265773315 399508.1924251766 327890.4778837714 322049.33171005524 332617.9541107132 247123.5811708643 335685.7556127785 0.9236959491255752 1.2077658687579194 1.2013650519660166 1.2222969720855026 1.190125543742222 0.9767780503084584 0.9593774127298592 0.9908610912117342 0.7361753575743835 1.0 18.356751793888684 2.6364747330870464 3.9711485288130435 0.9334340826709744 1.159243835083379 0.5120213102052099 0.10600887160340021 0.1956616250944581 5.499467600756222 0.03525057199604938 0.033153894244572504 432.9868761677227 -2.6364747330870464 0.22580975241240453 LDEGT(ph)PPEPK ddPTM_BT-474_Trastuzumab_2h_R1 3 LDEGTPPEPK 10 0 Q9Y4G6;H0YMT1;A0A1B0GVU7;H0YN01 Q9Y4G6 TLN2 Talin-2 1 LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK 158.04 9.0654e-05 1676950000.0 2987900.0 2313360.0 2088600.0 1831800.0 1959190.0 2906320.0 2757020.0 2534450.0 3925910.0 2707680.0 True False 2971813.478386898 2390358.789144352 2382656.7255633585 2063705.6921813167 2208681.2334710783 2705412.93914139 2623652.409760822 2723583.5286763296 2958422.084998803 2534873.544238523 1.1723714917225316 0.9429893631488496 0.9399509221984126 0.814125697462062 0.8713181130834544 1.0672772790936587 1.0350229958114017 1.0744455220919098 1.167088627250443 1.0 21.273482347459904 2.713748971435708 21.6850092991012 1.0705640911353715 0.9399629614430544 0.28547023410661576 0.09495016393687539 186.4886296983663 162986.98170819686 0.03169132541399763 0.029903386281774847 517.3077340788844 -2.713748971435708 -0.13060112969231719 LDEGWVPLEIMIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDEGWVPLEIMIK 13 0 P05455;E7ERC4;E9PFL9 P05455 SSB Lupus La protein 0 ; 156.51 2.6699e-06 0.0 145889.0 135285.0 117298.0 114668.0 113587.0 134151.0 129695.0 132359.0 181786.0 151075.0 False True 145103.54983379153 139787.8794434906 133812.53882750706 129184.95704282494 128051.63116710454 124877.45712748641 123421.15736698659 142236.30068538355 136987.27610760115 141433.26415818525 1.025950653811548 0.988366352678855 0.9461178713788657 0.9133986817863352 0.9053855323871045 0.8829426222378486 0.8726458948790639 1.0056778476547084 0.9685647639043987 1.0 17.10976194672092 -0.9724630742986727 5.559602483878836 1.0000001083794285 0.9440701440022026 0.09854621923105533 0.04933710143569171 7.14111128414482e-08 1.3258986968234636e-08 0.051530208347545146 0.012145763057971506 0.10654594500474543 0.9724630742986727 -0.05592996437722597 LDEIYVAGLVAHSDLDER ddPTM_BT-474_Trastuzumab_2h_R1 12 LDEIYVAGLVAHSDLDER 18 0 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;;;;;;;; 276.46 4.2066e-39 7140037300.0 4680021.0 4790078.0 4648807.0 4385430.0 4326513.0 5028162.0 4726342.0 4434065.0 5515050.0 4915395.0 False True 4654824.286935214 4949512.850566708 5303318.617445188 4940624.988351729 4877468.785298349 4680576.9959602 4497710.7810802115 4764957.446025852 4155939.8253838294 4601690.282818616 1.0115466276196345 1.0755858274614352 1.1524718726173835 1.0736543932125542 1.0599298269832305 1.0171429862275008 0.9774040634315103 1.0354798244064423 0.9031333205759 1.0 22.133732455433286 2.6871535523695744 1.7079433545562035 0.9856685881149221 1.0832814915191427 0.5084623800554576 0.044436660901339825 0.3190709776975504 1.8574717630391422 0.018014766573954424 0.016865977178500177 486.57921382758815 -2.6871535523695744 0.09761290340422057 LDELEELLTNNR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDELEELLTNNR 12 0 O75306;O75306-2 O75306 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial 0 ;; 129.16 0.00055656 45210000.0 49950.0 56680.0 60057.0 46560.2 55471.0 89705.0 58469.0 47935.0 66281.0 72865.0 False True 49681.074749966705 58566.559536216475 68512.50357519796 52454.716546075135 62534.90304762391 83503.90449285631 55640.63109672961 51512.15310899793 49946.93566989712 68214.69331713492 0.728304597354061 0.8585622347363845 1.004365778743276 0.768965071824181 0.916736556402808 1.22413369366979 0.8156692992527634 0.7551474704945795 0.7322020116353861 1.0 16.057794906080403 -2.5420575847873965 2.203127463702825 3.044154379291131 0.8693443467605254 0.06980510177798349 0.14531576740834173 5561877.514219193 773901.7939578028 56479826.79770727 0.03657577747383193 0.0028703999593433405 2.5420575847873965 -2.1748100325306057 LDELFEQER ddPTM_BT-474_Trastuzumab_2h_R1 1 LDELFEQER 9 0 Q9P0U4;Q9P0U4-2;A0A669KB29 Q9P0U4 CXXC1 CXXC-type zinc finger protein 1 0 75.294 0.089959 26698000.0 21557.0 29311.0 24809.0 25075.0 23580.0 27561.0 24899.0 24365.0 33064.0 25146.0 False True 21440.939507207855 30286.59891612633 28301.89155630632 28249.492429002323 26582.77323039016 25655.772941615454 23694.54024658315 26183.240022963077 24915.82023490105 23541.160751426287 0.910785144946976 1.286538044403412 1.2022300792704792 1.2000042277987832 1.1292040146652325 1.089826165010196 1.0065153752092522 1.112232327854807 1.0583938701234805 1.0 14.522897837098299 2.751748213701068 2.708998070165126 1.0579506068130475 1.1628938422281618 0.18854169456164516 0.09559844662703867 0.44564346881425 6.525771325153446 0.03139870733948066 0.03158683065890471 564.6095422280978 -2.751748213701068 0.1049432354151143 LDELYGTWR ddPTM_BT-474_Trastuzumab_2h_R1 5 LDELYGTWR 9 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ;;;; 156.75 0.00016325 1968260000.0 1092420.0 1240820.0 1147770.0 992190.0 917026.0 1133720.0 1147770.0 997013.0 1346640.0 1108580.0 False True 1086538.5320992733 1282119.9436084712 1309366.0394043173 1117801.1522684668 1033803.8254610585 1055348.6048898178 1092247.9801928082 1071415.1727894305 1014778.6160515114 1037829.4752969112 1.0469335839478129 1.2353859416467925 1.2616389017374194 1.0770566638114383 0.9961210873928003 1.0168805473441527 1.0524349194074762 1.0323614796957956 0.9777893576988597 1.0 19.985137984740934 3.527114782773959 5.224609670376071 1.0193062834008288 1.1859426870711236 0.6422401503409005 0.05613077347182653 0.12494209326614057 7.716780074607864 0.015046509710863357 0.023058517684210095 3366.005201630235 -3.527114782773959 0.16663640367029475 LDETDDPDDYGDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDETDDPDDYGDR 13 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;; 321.23 1.0786e-50 9058720000.0 10449800.0 10559300.0 9108940.0 8167800.0 8698210.0 10872400.0 9968410.0 9431540.0 10704810.0 9826820.0 False True 10393539.43788192 10910759.917268347 10391399.5756742 9201842.64253661 9805875.485170135 10120816.578876663 9486199.92527579 10135369.4071897 8066753.012604983 9199663.934436131 1.1297738169518217 1.1859954879903005 1.1295412147368962 1.0002368247488176 1.065894966930785 1.100128945035968 1.0311463541366004 1.1017108319849644 0.8768530100767656 1.0 23.13314972951796 5.985252738511689 0.20487338462387372 0.9737478868600453 1.4632809693527222 0.43818856057296196 0.06291938928598956 23.00904291958983 0.5718366978440036 0.11931458368754917 3.1048437679193492 966613.2377798 -5.985252738511689 0.4895330824926769 LDETDDPDDYGDRESGCSFVLALMQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDETDDPDDYGDRESGCSFVLALMQK 26 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 189.64 7.605299999999998e-18 647130000.0 776660.0 737960.0 703960.0 705020.0 706650.0 937570.0 989970.0 848960.0 1158200.0 906680.0 False True 772478.5488550386 762522.5524937598 803071.4490699905 794275.4597126709 796637.6888573024 872757.9927023835 942081.3690473486 912313.706131531 872777.1290848785 848814.9061521987 0.9100671339017785 0.8983378437006783 0.9461090318387906 0.9357463611392465 0.9385293343499077 1.0282076650358585 1.109878446077179 1.074808771051373 1.028230209859655 1.0 19.6950904662727 2.690657579829814 3.037985850818525 1.063557896888677 0.9238628769435095 0.802945545979866 0.030369466507389174 0.10317725956561266 1.9075962783515026 0.010386570745458073 0.010054746998373838 490.52097161009743 -2.690657579829814 -0.13969501994516742 LDFIESDS(ph)PCSSEALSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDFIESDSPCSSEALSK 17 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 LDFIESDS(0.998)PCS(0.002)SEALSK;LDFIESDS(0.874)PCS(0.115)S(0.011)EALSK 282.87 4.8116e-36 365870000.0 652970.0 569230.0 489710.0 459790.0 471430.0 608300.0 564110.0 553190.0 789690.0 637270.0 True False 649454.482071787 588176.4764431985 558656.9113643743 517999.366856669 531463.8161154725 566249.6527841762 536821.8441905302 594471.8468419021 595081.4808038651 596598.8830057031 1.0885948676266273 0.9858826310232565 0.9364028785133243 0.8682540004884945 0.8908226804547873 0.949129589266702 0.8998036360477037 0.9964347298924114 0.9974565788755869 1.0 19.186401750997565 -0.18532400633486068 6.997933775177144 1.0000000024019131 0.9530452453863548 0.03913012081364986 0.06123330823393647 0.0 0.0 0.06156645766200454 0.0145113532354793 0.6526434649090936 0.18532400633486068 -0.04695475701555829 LDFIESDSPCS(ph)SEALSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDFIESDSPCSSEALSK 17 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 LDFIESDS(0.224)PCS(0.767)S(0.008)EALSK 350.45 1.2268999999999996e-87 86029000.0 208110.0 198540.0 197820.0 184800.0 183830.0 232260.0 209270.0 192230.0 284610.0 222750.0 True False 206989.55888319443 205148.28388003542 225671.3365177364 208195.66105202926 207239.6608542249 216204.41288123105 199146.8106109666 206575.17872416115 214471.67907861088 208533.90429413054 0.992594271822783 0.9837646524407858 1.0821805561144342 0.9983779940089541 0.9937936066353981 1.0367830287025246 0.9549852878123659 0.9906071601325477 1.0284739059798416 1.0 17.669922436430532 2.262440064859852 24.99998018243661 0.991157782522154 1.0145726779136763 0.09468987097993242 0.03157496255895704 530.4711046084172 555361.558832097 0.011032735382924718 0.009226076790181715 182.99535447538136 -2.262440064859852 0.023414895391522306 LDFLPEMMVDHCSLNSS(ph)PVSK ddPTM_BT-474_Trastuzumab_2h_R1 5 LDFLPEMMVDHCSLNSSPVSK 21 0 Q92879-4;G5EA30;F5H0D8;E9PKU1;F5H3J7 Q92879-4 CELF1 CUGBP Elav-like family member 1 1 LDFLPEMMVDHCSLNS(0.014)S(0.986)PVSK;LDFLPEMMVDHCSLNS(0.087)S(0.909)PVS(0.004)K;LDFLPEMMVDHCS(0.003)LNS(0.062)S(0.935)PVSK;LDFLPEMMVDHCS(0.002)LNS(0.286)S(0.712)PVSK;LDFLPEMMVDHCS(0.032)LNS(0.134)S(0.826)PVS(0.008)K 258.05 1.0813e-36 1316588000.0 663673.0 943699.0 1038407.0 1015209.0 1017264.0 1200093.0 1097081.0 1001156.0 1148640.0 1129447.0 True False 660099.8583090014 975109.4507369087 1184605.679604555 1143734.3553082757 1146806.5406038854 1117133.395625054 1044011.0007735931 1075867.344487159 865573.0629874407 1057364.7254917754 0.6242877622023867 0.9222072830956128 1.1203378087476867 1.0816838577401284 1.0845893691701423 1.056526067772386 0.9873707488095259 1.0174988048582556 0.8186135229590402 1.0 20.012041672531733 4.6823296916269035 3.168478117760673 1.0249254760630826 0.5888486046465473 0.6926090552799267 0.07915947001214163 0.16127968364386847 2.6032506770558164 0.01963040947909724 0.1604261512057385 48120.45128759153 -4.6823296916269035 -0.4360768714165353 LDFLRPYTVPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDFLRPYTVPNK 12 1 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 0 ; 135.58 0.00011411 936690000.0 1138430.0 1254380.0 1031370.0 994600.0 1030510.0 1316930.0 1236330.0 1157100.0 1759370.0 1357950.0 False True 1132300.8193714626 1296131.2800112765 1176577.931171253 1120516.2580213654 1161739.3401886926 1225893.728819769 1176523.9946607563 1243448.6776347444 1325796.8378501656 1271284.4684005138 0.8906746267388009 1.0195446512785797 0.9255032688722948 0.8814048199858527 0.9138311440635729 0.9642953715639634 0.9254608420891182 0.9781041997620002 1.0428797572884985 1.0 20.277855459801327 1.51714720579373 3.363060255730092 1.0206186103593913 0.9334653319227583 0.4740957176867925 0.038042332694551206 0.1872311007398376 4.522186429216333 0.0263372282018265 0.01002112981943495 32.89631153006605 -1.51714720579373 -0.08715327843663301 LDGERPGPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDGERPGPNR 10 1 E7ESY4;Q13330-3;Q13330;H0Y4T7 E7ESY4 MTA1 Metastasis-associated protein MTA1 0 106.4 0.0022085 225850000.0 110130.0 152800.0 133820.0 138870.0 144490.0 110570.0 147570.0 125710.0 163330.0 135570.0 False True 109537.0723165932 157885.85563044943 152660.69281570864 156450.92776133795 162889.94504067328 102926.55615378325 140431.47532785562 135091.1185424455 123079.51000987129 126917.80653268371 0.8630551953983333 1.244000821821569 1.2028311628313215 1.2326948600474663 1.283428618022374 0.8109701779889943 1.1064757512311079 1.0643984656924954 0.9697576200875802 1.0 16.953534967526046 2.759945583099324 24.99480344351844 1.0097508466167466 1.1754199250826611 0.30153744403402294 0.13096684231721983 1076.6702623529932 1258413.0663584895 0.03945173686393047 0.04181108432782218 575.3678394922425 -2.759945583099324 0.1656690784659145 LDGLVET(ph)PTGYIESLPR ddPTM_BT-474_Trastuzumab_2h_R1 5 LDGLVETPTGYIESLPR 17 0 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W118;F8VUX1;H0YHC3;F8W020;P55209-3;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 LDGLVET(0.885)PT(0.115)GYIESLPR;LDGLVET(0.986)PT(0.014)GYIESLPR;LDGLVET(0.9)PT(0.099)GYIESLPR;LDGLVET(0.656)PT(0.344)GYIESLPR;LDGLVET(0.993)PT(0.007)GYIESLPR 192.24 2.2081e-09 538597000.0 381597.0 304911.0 277800.0 316940.0 281377.0 350601.0 316417.0 307617.0 492134.0 353182.0 True False 379542.52415141265 315059.77831240784 316911.82531911385 357064.57150340936 317208.69309785747 326364.77809598064 301110.7008796778 330572.9425874754 370854.16995774256 330641.6223856769 1.147896993164083 0.952873918410993 0.9584752912609776 1.0799141648503994 0.9593731448844919 0.9870650154120417 0.9106860131736446 0.9997922832651681 1.1216197382589652 1.0 18.334908822266343 4.747913765888106 24.564075778206366 0.9929334132830429 1.1478970981083914 0.369376631031631 0.05911031612882347 1048.9603060849067 2754798.907881522 0.013891401477005263 0.17378593119863753 55964.6466286927 -4.747913765888106 0.1549636848253485 LDGLVETPTGYIES(ph)LPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDGLVETPTGYIESLPR 17 0 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W118;F8VUX1;H0YHC3;F8W020;P55209-3;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 LDGLVETPTGYIES(1)LPR 185.25 6.1884e-10 21174000.0 35389.0 30000.0 27509.0 28464.0 21659.0 33751.0 30830.0 28904.0 41181.0 28734.0 True False 35198.46955608753 30998.531864617024 31382.028087485596 32067.539481520325 24417.145267049204 31417.872811308127 29338.63511796291 31060.96325153804 31032.494347128606 26900.17151958495 1.3084849488956203 1.1523544317198209 1.1666107059814688 1.1920942384390827 0.9076947799114234 1.1679432150993543 1.0906486264075532 1.1546752863238727 1.153616969487911 1.0 14.71532775120368 6.4056304483835245 0.8025233952221871 1.1020708154260122 4.034877220615936 0.37297423588040046 0.08230042938511534 34.022305752372226 1.863561611881748 0.026849111152640905 156.37437287894525 2544664.015271613 -6.4056304483835245 2.9328064051899236 LDGLVETPTGYIESLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDGLVETPTGYIESLPR 17 0 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W118;F8VUX1;H0YHC3;F8W020;P55209-3;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 177.81 2.3426e-09 36279000.0 29879.0 30082.0 28862.0 34153.0 31239.0 32648.0 32517.0 30582.0 37541.0 34617.0 False True 29718.13478386897 31083.26118504699 32925.518726998795 38476.76629821404 35217.10148194051 30391.120605125398 30944.028482997084 32864.184132249386 28289.52357362752 32407.713422895224 0.9170080713832116 0.9591315740001409 1.015977841365931 1.1872718632173285 1.0866888700966026 0.9377742949200126 0.954835291191384 1.014085248884967 0.8729256274415736 1.0 14.984049612182243 2.7257617679193005 24.76357502766166 0.9614626349458497 1.036700886980314 0.20065977877008712 0.0765776487757939 1288.7820465495274 2493569.37078262 0.026934094269929463 0.025552260722367194 531.8164515167957 -2.7257617679193005 0.07523825203446433 LDGMGCLEFDEER ddPTM_BT-474_Trastuzumab_2h_R1 1 LDGMGCLEFDEER 13 0 Q13951-2;A0A494C0A9;Q13951;J3KS23;H3BSC0 Q13951-2 CBFB Core-binding factor subunit beta 0 93.839 0.012632 64912000.0 15337.0 10714.0 12131.0 12036.0 11222.0 15051.0 10553.0 10379.0 15738.0 14692.0 False True 15254.4272961009 11070.609013250236 13838.939355457778 13559.756365921125 12651.055181994834 14010.559796243022 10042.511073625117 11153.533683494104 11859.580778395619 13754.34398154597 1.1090625126554616 0.8048809182105329 1.0061504477440224 0.9858526429260516 0.9197861562113464 1.018627992366689 0.7301337735263149 0.810909898607935 0.8622425609180249 1.0 13.74759971097818 2.2506420599655814 24.99992469686585 0.828728582219364 0.9658978295988033 0.26651497588059625 0.09687278762706979 249.3342910220734 515942.7520102637 0.03154796132442627 0.0262084838970846 178.0910358553489 -2.2506420599655814 0.13716924737943936 LDGQTPHDER ddPTM_BT-474_Trastuzumab_2h_R1 4 LDGQTPHDER 10 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 ;;; 171.67 3.9522e-06 3155550000.0 1553780.0 1947420.0 1874150.0 1750380.0 1751150.0 2150070.0 1802600.0 1824490.0 2389160.0 1962710.0 False True 1545414.6211211875 2012238.6974597524 2138014.0295961723 1971977.9285294963 1974148.5726207702 2001440.7216203732 1715401.3513992848 1960642.7083724982 1800383.531103804 1837448.1674394293 0.8410656956243808 1.0951267813251582 1.1635778725533226 1.0732155407015047 1.0743968769316847 1.0892501661200464 0.9335780904175259 1.0670465393887798 0.979828200331073 1.0 20.809272122874376 2.2763776563892364 24.999012340587836 1.0054114138368928 1.0643734536419267 0.10220971442519111 0.08431718060953525 393.9382221143786 260412.0636332861 0.029121964152736508 0.024364788489421238 188.96338339263525 -2.2763776563892364 0.058962039805033895 LDHFNFER ddPTM_BT-474_Trastuzumab_2h_R1 3 LDHFNFER 8 0 Q9UHL4;R4GNE8;R4GMV4 Q9UHL4 DPP7 Dipeptidyl peptidase 2 0 ;; 158.76 0.00036313 1085290000.0 805330.0 996550.0 916440.0 867780.0 874150.0 910720.0 963890.0 728620.0 1012740.0 831890.0 False True 800994.1927605746 1029719.5643228042 1045466.7861607213 977640.8590245129 985467.821007021 847764.0700042828 917262.9582826229 782993.3242573928 763163.7970207381 778798.0679831398 1.028500487725806 1.3221907021283168 1.3424106057019067 1.255320087729953 1.2653701408878628 1.088554408204613 1.177793058293104 1.00538683446547 0.979925128727027 1.0 19.57088977950863 2.0715707992419707 1.0571937845953774 0.9797703239032172 1.2522262899594054 0.5613092278971623 0.08950216534766678 0.363542845248898 0.753882258853116 0.06734110498092145 0.033183309763665916 117.91547348892713 -2.0715707992419707 0.27245596605618827 LDHKFDLMYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDHKFDLMYAK 11 1 P68363;P68363-2;P68366-2;P68366;Q9BQE3;F5H5D3;A6NHL2-2;A6NHL2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha chain-like 3 0 ; 167.71 1.1369e-05 7279200000.0 8203800.0 9212800.0 11113000.0 7505600.0 4491900.0 7679600.0 10241200.0 6406900.0 20610000.0 9388800.0 False True 8159631.65232786 9519442.478744805 12677613.804072391 8455808.190433498 5063916.839422797 7148727.327833897 9745794.030816799 6885015.411578991 15530941.6598509 8789598.745843915 0.9283281169332184 1.0830349318557904 1.4423427246968343 0.9620243693640456 0.5761260537424675 0.8133166865227051 1.1087871372313796 0.7833139612697918 1.7669682210686317 1.0 23.067365875694637 -0.25129508426269576 7.389133238481095 1.000000002278419 1.0247510125741373 0.0 0.32453366425815944 0.0 0.0 0.30708734513969016 0.07238118138828291 0.5606668977462589 0.25129508426269576 0.024751010295718245 LDHKFDLMYAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDHKFDLMYAKR 12 2 P68363;P68363-2;P68366-2;P68366;Q9BQE3;F5H5D3;A6NHL2-2;A6NHL2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha chain-like 3 0 118.87 0.00034795 411050000.0 583920.0 898480.0 810020.0 916550.0 870920.0 831760.0 732770.0 637570.0 545640.0 702630.0 False True 580776.2395996106 928385.3636573709 924063.7751799455 1032585.1360240114 981826.499652731 774262.3889524356 697323.1156467628 685148.7109148604 411174.33320140914 657787.5518481921 0.882923731177031 1.4113756957681511 1.4048058109090003 1.569785158023661 1.4926194588117143 1.1770706009516037 1.0601038491645018 1.0415957386085999 0.6250868263562127 1.0 19.32726218091233 2.038208360283056 1.4181132360447495 0.8594509634305241 1.3639546122029784 0.5004439153559955 0.20165846941035237 0.3469526916747847 1.3053165460578688 0.13770634497226847 0.0673322090668986 109.19640994442798 -2.038208360283056 0.5045036487724543 LDHLAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LDHLAEK 7 0 O43707;O43707-2;P12814-3;P12814;P12814-2;P12814-4;H9KV75 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 ;; 125.58 0.004035 2514750000.0 9445700.0 7831500.0 7006720.0 5959540.0 5899860.0 7935800.0 7516400.0 6752100.0 9896600.0 7841600.0 False True 9394845.400715927 8092166.743258269 7993205.272497989 6714017.152954596 6651172.199790054 7387216.824863828 7152803.016563616 7255975.988469074 7457715.5376458205 7341142.374468479 1.2797525128227938 1.1023034741025801 1.0888230829437797 0.9145738919742326 0.9060132416069125 1.0062761962709768 0.9743446798471198 0.9883987557174203 1.0158794309156525 1.0 22.807573151431004 4.5854286102791475 1.3222744935313722 0.9740110470684025 1.3501729836069847 0.8255772278562585 0.043038091324861256 0.4028604418268712 0.7664801777540606 0.01257325278678665 0.18950087601785892 38497.15275082845 -4.5854286102791475 0.3761619365385822 LDIDPETITWQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDIDPETITWQR 12 0 V9GYY3;A0A384N5Y3;F5H2F4;P11586;V9GZ78;A0A494C1T2 V9GYY3 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed 0 ;;; 232.88 2.4469e-14 777560000.0 822550.0 969860.0 841350.0 840470.0 879290.0 943600.0 957800.0 871830.0 1055270.0 962320.0 False True 818121.482193896 1002141.2038072506 959804.7668547034 946873.4158246687 991262.3695398543 878371.1529954759 911467.5548486828 936890.3816630361 795212.8483935408 900903.9137163985 0.9081118083048286 1.112373016200173 1.0653797283389832 1.0510259766978227 1.1002975505464396 0.9749887192431314 1.0117256024437804 1.0399448458362075 0.8826833098250599 1.0 19.78101371743784 1.261631146966981 24.994172592367093 0.9413416647006084 1.0366597855767083 0.2563908410252611 0.06217354556126627 244.55405068111702 264946.1566963327 0.039238678971801076 0.014308605439422547 18.265482414535143 -1.261631146966981 0.09531812087609992 LDIDS(ph)PPITAR ddPTM_BT-474_Trastuzumab_2h_R1 8 LDIDSPPITAR 11 0 P14618;B4DNK4;H3BUW1;H3BTJ2;H3BT25;H3BN34;H3BQZ3;P14618-2;H3BTN5;H3BQ34;H3BU13 P14618;P14618-2;H3BU13 PKM Pyruvate kinase PKM;Pyruvate kinase 1 LDIDS(0.998)PPIT(0.002)AR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(0.998)PPIT(0.002)AR 278.38 3.0884e-27 7820570000.0 3711040.0 4095090.0 3593700.0 3571260.0 3425930.0 3981670.0 4154530.0 3628050.0 4612680.0 4032670.0 True False 3691060.172975308 4231392.595115821 4099661.722999642 4023381.1498304647 3862201.878421993 3706426.5247430056 3953559.5120541826 3898793.513864612 3475946.820745322 3775301.5480575096 0.977686186385417 1.1208091701424439 1.0859163621271588 1.0657112017715773 1.0230181163698555 0.9817564180138294 1.0472168810166678 1.0327104906019076 0.9207070684284243 1.0 21.848160452043334 3.158607435145028 3.6490645465287552 1.0053083047162006 1.0688271505857214 0.29733108536200015 0.046454773614375486 0.29943408764682083 7.831043536675391 0.013652346733192301 0.016979928442044986 1440.812392263658 -3.158607435145028 0.06351884586952083 LDIDSPPITAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDIDSPPITAR 11 0 P14618;B4DNK4;H3BUW1;H3BTJ2;H3BT25;H3BN34;H3BQZ3;P14618-2;H3BTN5;H3BQ34;H3BU13 P14618;P14618-2;H3BU13 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;; 244.61 1.6049e-15 4686000000.0 1112790.0 1304940.0 1230020.0 1305780.0 1180210.0 1327460.0 1375780.0 1247780.0 1452020.0 1362840.0 False True 1106798.8622825912 1348374.1390471123 1403196.1244745026 1471091.614115362 1330502.7478472742 1235695.8147047216 1309228.2654100216 1340895.6796984558 1094189.127071165 1275862.3844139741 0.867490785686078 1.0568335233634496 1.0998020959125738 1.1530174665279909 1.0428262202105734 0.968518101795358 1.026151629990544 1.050972029647502 0.8576074821531361 1.0 20.283041296522313 2.8593434192956324 6.248045079578853 0.9933706319187214 1.054771528854574 0.1106830043461906 0.08383379614349398 0.5821460377893585 27.529688267211785 0.026368267881191475 0.028045655511802985 723.3415614084448 -2.8593434192956324 0.0614008969358526 LDIFEFLNHVEDGLKDHYDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDIFEFLNHVEDGLKDHYDIK 21 1 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 303.13 1.7897e-55 338150000.0 231933.0 152870.0 134566.0 113715.0 126005.0 187339.0 199599.0 156065.0 261356.0 192098.0 False True 230684.29849817874 157958.1855381336 153511.72313136008 128111.30734053838 142050.98985985204 174388.6958785708 189943.63382777394 167711.36278201244 196948.31579097486 179838.1411766281 1.282732889635531 0.8783352880799347 0.8536104862237677 0.7123700595565754 0.7898824405682474 0.9696980559162636 1.0561921547066078 0.9325683733424194 1.0951420788849346 1.0 17.45633950335829 2.4913969326964622 22.693708657699595 1.0085697187473617 0.8877344665803778 0.11996159491628022 0.14601936638139829 423.04862511957003 672513.5466871591 0.04961059524647575 0.045058556400247765 310.0251545689323 -2.4913969326964622 -0.12083525216698388 LDINLLDNVVNCLYHGEGAQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDINLLDNVVNCLYHGEGAQQR 22 0 O14980;C9JKM9;C9J673;C9IYM2;F8WF71;C9IZS4;C9JQ02;C9JV99;C9JF49 O14980 XPO1 Exportin-1 0 ; 325.77 1.489899999999999e-68 2531800000.0 1043790.0 1388870.0 1160790.0 1203340.0 1170430.0 1236340.0 1292670.0 1186540.0 1414430.0 1333600.0 False True 1038170.3506159717 1435097.6983603549 1324219.1422324495 1355682.72061877 1319477.3228178753 1150874.7258313147 1230138.6136210556 1275085.6399280364 1065862.6788909705 1248488.5062475973 0.8315417766529957 1.1494680897572875 1.0606578559641409 1.085859192002777 1.0568598078516869 0.9218144340714306 0.9853023135297471 1.0213034669901593 0.8537224600444909 1.0 20.251751109007664 2.754351717184429 24.287157885237296 0.9654244531923345 1.0471747458480445 0.16380187519355938 0.08821894393697095 996.5309047490598 1532690.5795883911 0.025894411442054042 0.027374924660937165 568.0044225392086 -2.754351717184429 0.08175029265570999 LDIPTGTT(ph)PQRK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDIPTGTTPQRK 12 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 LDIPT(0.02)GT(0.162)T(0.819)PQRK 79.471 0.013445 283060000.0 646950.0 587040.0 658460.0 570350.0 559280.0 707830.0 711600.0 642450.0 953660.0 769850.0 True False 643466.893082902 606579.2715268269 751165.4445630799 642556.2515206969 630500.9928877268 658899.378152594 677177.1894240158 690392.8812949974 718643.2713892971 720717.5138982545 0.8928142866994929 0.8416324840587394 1.0422466917726712 0.8915507659099404 0.8748240201316048 0.9142269550086339 0.9395875309887566 0.9579243850489554 0.9971219757131499 1.0 19.45907437862437 1.6023884299264908 1.4229790999514496 1.001433457216144 0.9104140524017585 0.3353893243947722 0.04929979305336182 0.47313958903774633 1.8564343022334464 0.04216277359848878 0.014965370471501762 40.030261754239284 -1.6023884299264908 -0.09101940481438553 LDKAS(ph)PDS(ph)RHSPATISSSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDKASPDSRHSPATISSSTR 20 2 O15119;O15119-2;O15119-3 O15119 TBX3 T-box transcription factor TBX3 2 LDKAS(1)PDS(0.506)RHS(0.474)PAT(0.015)IS(0.003)S(0.001)S(0.001)TR 97.346 0.0005121 344170000.0 509310.0 500130.0 464990.0 463290.0 512790.0 610780.0 628850.0 610540.0 790640.0 646510.0 True False 506567.9315496602 516776.5247150301 530456.5502344666 521942.4664978057 578090.766955545 568558.2162214682 598430.123059714 656101.5950593009 595797.3660332138 605249.1782949417 0.836957652675749 0.8538244135594707 0.8764267168917523 0.8623596449452096 0.9551285448814568 0.9393787494650777 0.9887334746088582 1.0840189769569228 0.9843836016624512 1.0 19.207169690014815 2.811743142829484 0.9275241811455459 1.0329239060027224 0.8479375347468584 0.8224764651990295 0.031808403156933104 0.21040432906271397 0.3901235122918656 0.01840372382190162 0.018547160259707603 648.2509215454807 -2.811743142829484 -0.18498637125586403 LDKAS(ph)PDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDKASPDSR 9 1 O15119;O15119-2;O15119-3 O15119 TBX3 T-box transcription factor TBX3 1 LDKAS(0.996)PDS(0.004)R 98.898 0.0034534 427110000.0 884030.0 729950.0 659400.0 609940.0 628060.0 847600.0 837240.0 856540.0 1153900.0 814110.0 True False 879270.4807049666 754245.9444859066 752237.7883924536 687158.3414614436 708039.7181967276 789007.4070357836 796739.5026326069 920459.3642219903 869536.8064678297 762152.8028053626 1.1536669254098555 0.9896256258714105 0.9869907787829245 0.9016018033813215 0.9289996908632319 1.035235197104273 1.0453802698093297 1.207709741188285 1.1408956357139983 1.0 19.53972074479246 2.057641922430725 3.012973166790334 1.1371970696604377 0.9900683690419145 0.2750488957559666 0.08063605637144354 0.2647618237192282 4.760975673240499 0.03733309719191379 0.023384688477440338 114.19364153092091 -2.057641922430725 -0.14712870061852312 LDKDEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDKDEIR 7 1 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 ;;; 121.09 0.0040782 6544300000.0 12856200.0 13286700.0 11850000.0 10741800.0 11312200.0 13562100.0 13760200.0 13462900.0 18131800.0 12856600.0 False True 12786983.647658104 13728939.777520249 13518376.99795356 12101710.778618438 12752741.617337564 12624583.948749434 13094566.556931335 14467569.961220995 13663460.84367222 12036080.780910974 1.0623876559501038 1.1406486901694879 1.1231543925322838 1.0054527714546044 1.0595427074204422 1.048894916754947 1.0879427278104599 1.202016688369716 1.1352084696325937 1.0 23.52086235876616 1.9769231301157544 24.383999937701837 1.137385951465513 1.0744116454107298 0.0319685032212641 0.05965908658049222 936.9417356929468 990010.7292219234 0.02417676824447161 0.015724614818615066 94.82506086104685 -1.9769231301157544 -0.06297430605478316 LDKDIVALMTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDKDIVALMTR 11 1 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 ; 147.18 3.2305e-05 912670000.0 1939780.0 2893500.0 2904700.0 2526800.0 2208600.0 2878500.0 2951200.0 2767400.0 3929200.0 2716500.0 False True 1929336.440009817 2989808.398342313 3313656.511895001 2846692.6209213575 2489852.1186021925 2679516.0702601527 2808439.181321187 2973917.440572458 2960901.308582542 2543130.6442873385 0.7586462159715255 1.17564089955754 1.3029832027459947 1.119365466857125 0.9790500241091326 1.0536289499240545 1.1043235972284058 1.1693923185789925 1.164274165479326 1.0 21.278174146579932 1.9981122432036835 20.920578448992813 1.1317471455034618 1.0792889829932024 0.011718459566479766 0.13938416947209223 42.34153748971843 469250.34681889246 0.054166527700476724 0.039178212571052244 99.56627126588967 -1.9981122432036835 -0.052458162510259365 LDKDLTIGQMQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDKDLTIGQMQGK 13 1 Q9Y570;Q9Y570-4;Q9Y570-2;Q9Y570-3 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 ; 169.04 2.6613e-05 823190000.0 784450.0 728120.0 699930.0 626940.0 667030.0 853350.0 931590.0 786710.0 1159060.0 894450.0 False True 780226.6083605892 752355.034042165 798474.0600993789 706310.5397183938 751972.3167034403 794359.9230698283 886525.432680606 845418.2950324352 873425.1936082871 837365.4352228288 0.9317635712452897 0.8984787315014479 0.9535550746573381 0.8434913957613257 0.8980216821384981 0.9486418828100346 1.0587079372874943 1.0096169001858353 1.0430633470987045 1.0 19.675497842166575 2.4216552467930623 4.14459378705398 1.0272600377447305 0.9051011205248886 0.7808384759121494 0.030645354040738485 0.09500660201581773 3.3952455519654294 0.010787933656555414 0.009043108206134916 264.03119832470753 -2.4216552467930623 -0.12215891721984196 LDKDNLSYIEHIFEISR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDKDNLSYIEHIFEISR 17 1 Q15121-2;Q15121 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 ; 215.57 3.3488e-15 1813180000.0 2189200.0 2228840.0 2080260.0 1934260.0 1831890.0 2411300.0 2420900.0 2234500.0 2861500.0 2490000.0 False True 2177413.590442983 2303025.592037769 2373142.52605594 2179137.117675852 2065170.3330372935 2244612.506589648 2303791.8182639093 2401249.7365610893 2156321.6671355334 2331086.0682037505 0.9340768752141434 0.9879624881514547 1.018041572306507 0.9348162418365853 0.8859262475145923 0.9629041746705063 0.9882911873945207 1.0300991324663547 0.9250287651528525 1.0 21.152570841864055 2.2645115104470332 4.791394238391768 0.9931293205472128 0.9540573422561075 0.12041820130320646 0.04092200146948502 0.3773276508805936 21.15946261418124 0.015908691939415815 0.012634983941424567 183.87026857966023 -2.2645115104470332 -0.039071978291105314 LDKENALDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LDKENALDR 9 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;D6RGJ6;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKP3;A0A087WTJ7;H0YLS7 J3KN67;P09493-3 TPM3;TPM1 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain 0 ;;;; 164.65 5.663300000000001e-05 6202430000.0 8367680.0 8391040.0 7817660.0 7063620.0 6651310.0 9378450.0 9553890.0 7666740.0 11769360.0 9497120.0 False True 8322629.340616647 8670330.693909205 8918318.575681161 7957873.567750721 7498314.9030969525 8730139.825996641 9091731.841295974 8238871.069716876 8868958.929344153 8891005.670706498 0.9360728863369754 0.9751799757001216 1.0030719702569364 0.8950476315598135 0.843359590670593 0.9819069011236978 1.0225763179131486 0.9266523242541357 0.9975203320997778 1.0 23.083915182314303 LDKPFPELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDKPFPELR 9 1 Q13564-2;Q13564;Q13564-4;Q13564-3;H3BMR3;J3QRA5 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 ; 91.855 0.0095495 817370000.0 2151420.0 2062370.0 1823830.0 1817860.0 1824300.0 2287800.0 2195400.0 1964460.0 2710700.0 2217500.0 False True 2139836.9937652317 2131014.7387210107 2080609.4109854528 2048000.8896106153 2056613.791526751 2129649.7709019175 2089200.1147575667 2111057.9805257563 2042684.306519063 2075977.2515027365 1.0307612919246918 1.0265116041991473 1.0022313151453675 0.9865237627859987 0.990672604932463 1.0258540980448263 1.0063694644270589 1.0168984168769797 0.9839627602086807 1.0 20.985359204097037 4.265607311426995 5.66067723197278 1.0030437104033625 1.029251293775013 0.43109442526039854 0.012364925810648165 0.1728514893164917 15.623321962049813 0.0031989244516521472 0.008588447364988101 18433.47912343612 -4.265607311426995 0.02620758337165041 LDKSQIHDIVLVGGSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDKSQIHDIVLVGGSTR 17 1 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 120.92 3.7231e-05 1694080000.0 1260670.0 1841370.0 1833470.0 2055400.0 2494220.0 2166120.0 2235460.0 1797620.0 2471110.0 2248740.0 False True 1253882.6927936054 1902658.8873183276 2091606.6391930715 2315613.4292550897 2811844.132599817 2016381.2228980085 2127322.2595135025 1931767.5325294023 1862138.0516775432 2105223.487956827 0.5956055022027759 0.9037800016020657 0.9935318749569096 1.099937105253586 1.3356511309536943 0.9577991288967415 1.0104971142888601 0.9176068686200304 0.8845322419829144 1.0 21.00554196549104 4.733818784375116 1.992216404134324 1.0273657072180058 0.47068734009866936 0.5483809949862153 0.1180229698835306 0.612241153791265 2.62387536745413 0.03303516235378361 0.6212380646808899 54177.477990441235 -4.733818784375116 -0.5566783671193365 LDLAGR ddPTM_BT-474_Trastuzumab_2h_R1 11 LDLAGR 6 0 P60709;A0A2R8Y793;P63267-2;A0A2R8YEA7;Q562R1;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;P68133;P68032;P63267;P62736;Q6S8J3;A5A3E0;P0CG38;P0CG39 P60709;P63261;P68133;Q6S8J3 ACTB;ACTG2;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ;;;;;;;;;; 158.08 0.022184 67234930000.0 23799160.0 27945980.0 25905950.0 25745250.0 22070650.0 24730360.0 25634460.0 22325350.0 28793070.0 24169310.0 False True 23671027.966895252 28876145.050598368 29553282.581446018 29004596.01028002 24881216.454508495 23020808.42220564 24394423.23665309 23991380.98283022 21697403.705871083 22626803.943412684 1.0461498683638248 1.276191950167361 1.306118294716114 1.281868888015185 1.0996345978306907 1.0174131742060575 1.0781205908559177 1.0603079888273308 0.9589248114817305 1.0 24.431529481223635 3.077451131473933 4.317913225070101 1.0356447159543092 1.2358240093649497 0.6255302853654157 0.07412447180763541 0.1430835361154474 5.096872354132004 0.022234506990277767 0.02671297993072314 1195.2290262278555 -3.077451131473933 0.20017929341064056 LDLDLTADSQPPVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLDLTADSQPPVFK 15 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 192.63 2.9363e-07 82581000.0 272680.0 321860.0 283020.0 272900.0 284510.0 290530.0 320080.0 287330.0 387160.0 315130.0 False True 271211.9211775961 332572.9155315211 322866.7559460608 307449.1120189328 320740.66207711183 270446.34493405663 304596.5075756588 308772.0236321765 291749.60567820835 295018.13360363344 0.9193059350784797 1.1272965206211485 1.0943963071091858 1.0421363197694173 1.0871896522402837 0.9167109208866807 1.0324670685663486 1.04662049027475 0.9889209253495703 1.0 18.17044410842317 LDLENR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDLENR 6 0 E9PQX4 E9PQX4 TDRKH 0 105.2 0.077189 299190000.0 347660.0 481110.0 489430.0 445950.0 490580.0 486600.0 456430.0 395170.0 480910.0 433530.0 False True 345788.237188657 497123.4555128637 558337.4897981789 502407.224275717 553052.4551045288 452962.4873331911 434350.73716807726 424659.59203260083 362396.17436384736 405861.7442362938 0.8519852932661182 1.2248591116866563 1.3756839557490133 1.2378777537190453 1.3626621945983168 1.1160512015871966 1.0701938365375898 1.0463158897414162 0.8929054770751178 1.0 18.630628835163176 2.047010495643268 1.5250174630555697 0.9708396763018993 1.2195656613515262 0.33309980859595134 0.14022278102855412 0.4625921026715759 2.0203122635991404 0.09239993816431964 0.04626132831704395 111.43214631976278 -2.047010495643268 0.24872598504962695 LDLETLTDILQHQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDLETLTDILQHQIR 15 0 P18440;F5H5R8 P18440 NAT1 Arylamine N-acetyltransferase 1 0 204.35 4.9488e-09 62403000.0 60675.0 59559.0 59125.0 57730.0 55273.0 64914.0 58909.0 52667.0 69444.0 60802.0 False True 60348.332541626245 61541.385310824226 67449.28607628742 65038.61208080976 62311.688921261884 60426.64797111953 56059.34661576637 56597.27897760706 52330.45670192559 56921.56430478888 1.0602015822771242 1.0811611743714267 1.1849513782707624 1.1426005745829086 1.0946938947006333 1.0615774304367767 0.984852529976061 0.9943029442155625 0.9193432636833377 1.0 15.79668768975802 2.394708739604468 1.6528095294422993 0.9694121953050202 1.118772240226831 0.7507595933065204 0.037643760208686865 0.1899837888797321 1.0534750599874445 0.0190533404075548 0.01369883578125734 248.14683457967047 -2.394708739604468 0.14936004492181076 LDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLHLK 6 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 76.592 0.07465 1289390000.0 5460500.0 5537300.0 5383900.0 4861800.0 4796500.0 5898200.0 5670000.0 5771300.0 7839100.0 6125700.0 False True 5431101.274718587 5721605.683131465 6141906.322302295 5477303.381508416 5407305.843917153 5490471.316869349 5395720.438496577 6201983.712067588 5907258.843558339 5734752.581524375 0.9470506700177337 0.997707503818863 1.0709976123625011 0.9551071826803161 0.9429013313212229 0.9574033471919913 0.9408811211629153 1.0814736335876964 1.0300808552037148 1.0 22.451299813698185 1.7407495823573267 24.999999999999982 1.0427367719432 0.9753946251622199 0.33406758966377437 0.041122486847879745 0.404134323352863 4644.859696286364 0.020013460962708333 0.01109858266141833 55.04901878669447 -1.7407495823573267 -0.06734214678098005 LDLIHESILHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLIHESILHK 11 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ; 196.48 3.4885000000000004e-08 617900000.0 390950.0 833970.0 970470.0 1084170.0 1124140.0 1267830.0 1222850.0 761990.0 1088230.0 1270090.0 False True 388845.1686386288 861728.187304489 1107103.7405235444 1221425.810837546 1267292.5657002034 1180187.8962508016 1163696.073759355 818853.5631068178 820050.2980349127 1189031.7688212458 0.3270267278258788 0.7247310037466608 0.9310968550664367 1.027244050887231 1.065818928418155 0.9925621225585827 0.9786921630470752 0.6886725692103193 0.6896790477245824 1.0 20.18135583117694 4.669422356525841 2.359107879520652 0.9128443670683524 0.23612916632710515 0.6767917326817465 0.12511490793569935 0.320477026600257 2.402492789005014 0.03638121917969067 0.4165981170553306 46711.34328369863 -4.669422356525841 -0.6767152007412472 LDLITVEAFKPILSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLITVEAFKPILSTR 16 1 O95456;O95456-2 O95456 PSMG1 Proteasome assembly chaperone 1 0 ; 174.95 3.3671e-09 262080000.0 285170.0 346130.0 324420.0 286050.0 284450.0 338450.0 326270.0 340620.0 364960.0 335160.0 False True 283634.67640536523 357650.7278099965 370095.51609080983 322263.900670633 320673.0214327594 315053.7481256032 310487.0736275625 366038.7940333132 275020.4982134489 313769.801855088 0.9039578529496589 1.1398506984912926 1.1795128591174475 1.0270711163576791 1.0220009049209255 1.0040920007691123 0.9895377814942128 1.166583883691794 0.8765040376335033 1.0 18.259346984134993 3.5504543316196395 24.999143411111284 1.0262514891161072 1.0846999770528383 0.0671662874134713 0.09453170281599267 398.1136404094881 135713.69807456818 0.024972602260900652 0.03868738062142194 3551.847669464649 -3.5504543316196395 0.058448487936731075 LDLLEDR ddPTM_BT-474_Trastuzumab_2h_R1 8 LDLLEDR 7 0 Q14697;F5H6X6;Q14697-2;E9PKU7;E9PNH1 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;;;;; 198.64 0.00091886 3394190000.0 3725310.0 4902470.0 4495800.0 4310450.0 4024410.0 4273370.0 4810520.0 4219900.0 5385430.0 4191050.0 False True 3705253.3448808496 5065645.750344298 5128769.561805874 4856152.5280396035 4536894.758953115 3977961.9903309466 4577816.769629022 4534810.366218015 4058262.937564822 3923573.600861572 0.9443567833332394 1.2910795783802653 1.3071679248427135 1.2376861050786068 1.1563169754116156 1.0138619521390988 1.1667467557187625 1.1557857268746587 1.0343282299263288 1.0 21.90373683276 2.9939551017028827 9.358664551668776 1.0960696945249635 1.2084210058067748 0.20672589104982797 0.10748541936966817 0.231266828233242 250.66034312761454 0.03182418218553905 0.03614532860529478 986.1775272082683 -2.9939551017028827 0.1123513112818113 LDLLHQQLQELHAHVVLPDPAATHDGPQS(ph)PGAGGPTCSATNLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDLLHQQLQELHAHVVLPDPAATHDGPQSPGAGGPTCSATNLSR 44 0 Q16512;Q16512-2;Q16512-3;K7EM57;K7EKY9 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LDLLHQQLQELHAHVVLPDPAAT(0.038)HDGPQS(0.962)PGAGGPTCSATNLSR 278.73 1.3990999999999992e-81 841700000.0 138890.0 177920.0 175460.0 139720.0 165050.0 171080.0 148960.0 29690.0 133420.0 113620.0 True False 138142.2316721297 183841.95964508885 200163.24287434013 157408.5376741857 186068.1391720055 159253.64227900203 141754.23571753968 31905.618562765187 100540.42873640508 106368.67432502408 1.2987116042267968 1.7283468165010172 1.881787510698064 1.4798392353109744 1.7492757181822982 1.4971855510051828 1.3326690082118553 0.2999531465934528 0.9452071239431827 1.0 16.698713812775576 1.9410074898222454 4.96915883050046 0.6901731442896478 1.6120218707071845 0.7253449467120202 0.23481476683127536 0.09738494228276902 4.871565658364916 0.10260654519058789 0.06192676255275732 87.29864237411675 -1.9410074898222454 0.9218487264175367 LDLMDEGTDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLMDEGTDAR 11 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4;E5RHK8;Q9UQ16-5;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;E5RIK2;A0A1B0GUX5;A0A1B0GU67;A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 P50570-2;A0A0D9SFE4 DNM2;DNM3;DNM1 Dynamin-2;Dynamin-3;Dynamin-1 0 ; 190.24 5.489299999999998e-06 427630000.0 436310.0 465810.0 455190.0 468490.0 438980.0 502140.0 500390.0 459240.0 556420.0 506230.0 False True 433960.95543859847 481314.20426190825 519276.7954175929 527800.7859646387 494881.5009616909 467428.2437104161 476184.2240245691 493510.820773468 419297.74664600886 473921.9679946919 0.9156801852313775 1.0155980029760914 1.0957010446568052 1.1136871080231296 1.0442257046148022 0.9862979040373402 1.0047734778774857 1.0413334981319025 0.8847400520811163 1.0 18.854290011082455 2.7422684519538145 23.5639679740096 0.9923293751023224 1.0433145755242819 0.14426528842502617 0.06243648882299757 316.09951972770904 2008872.7705387387 0.02030482349642849 0.020773645635772213 552.4188023154625 -2.7422684519538145 0.05098520042195942 LDLPPYETFEDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDLPPYETFEDLR 13 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;K7ERN1;K7EKL1;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 0 ;; 107.24 0.0030485 56897000.0 35967.0 44611.0 40359.0 35963.0 38149.0 43968.6 42094.0 41137.0 44909.0 38483.0 False True 35773.35766830936 46095.85016708104 46041.196393283346 40515.91211263053 43007.049023161715 40929.15417295138 40057.75240530424 44206.85182945337 33841.77869976926 36026.981993046116 0.9929601562299694 1.2794813114231551 1.277964288048612 1.1245991163081843 1.1937455385927938 1.1360694654037764 1.1118819892556124 1.2270484338095853 0.93934536915419 1.0 15.136790180744288 1.2345818662619819 24.997824488954734 0.9696725854323638 1.1734845750582061 0.48165719960875464 0.0821243343647034 83.25042105703673 523012.2912978798 0.06635958872954434 0.01898129232549353 17.162552006598858 -1.2345818662619819 0.20381198962584235 LDLRDDKDTIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LDLRDDKDTIEK 12 2 P63000;P63000-2;B1AH77;B1AH80;P15153;B1AH78 P63000 RAC1;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2 0 ;;; 120.14 0.00024868 1068100000.0 4272490.0 3911070.0 3958230.0 3255220.0 4036640.0 6671900.0 5038030.0 4169400.0 9008600.0 5325990.0 False True 4249487.388558267 4041247.600658261 4515514.378448078 3667330.518234772 4550682.176960221 6210687.25696325 4794321.241756426 4480541.799784214 6788551.2390554575 4986080.758390556 0.8522700683111173 0.8105058454694434 0.9056239955298336 0.7355136621209761 0.912677190256566 1.2456050268564005 0.9615410327417104 0.8986099537686744 1.3615004585779547 1.0 22.24947481933891 2.989357741334331 24.12372961836354 1.0624444201553096 0.829753808934844 0.4675740637828042 0.1339476801072101 327.0067179191779 741257.8679978206 0.03992250132073686 0.04493517173233501 975.7930966697895 -2.989357741334331 -0.23269061122046564 LDLRDPAALFETHGAEEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDLRDPAALFETHGAEEIR 19 1 A0A087WVI0;E9PBL8;Q8WTW3;J3KRP4 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 0 ;;; 144.27 8.2268e-08 282673000.0 227259.0 299406.0 250114.0 278299.0 278349.0 274892.0 280381.0 252710.0 327113.0 288953.0 False True 226035.4627948487 309371.5477152508 285327.8771701396 313531.6248653607 313795.09524621995 255889.36306616454 266817.89987056644 271568.50343537825 246500.38423963173 270511.7721548907 0.8355845699218754 1.1436528076053918 1.0547706478621026 1.159031351455705 1.1600053215670996 0.9459453872478659 0.9863448741808944 1.0039064151333217 0.9112371793508844 1.0 18.045331853183647 2.7188823406452487 24.76187606303064 0.9739769354101261 1.0786993898874635 0.23157481693010296 0.09132809950394022 1054.8037711109735 1327295.101171602 0.028925802004483105 0.027305287788478495 523.4586016152392 -2.7188823406452487 0.10472245447733741 LDLTEKDYEILFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLTEKDYEILFK 13 1 Q92820 Q92820 GGH Gamma-glutamyl hydrolase 0 ; 147.35 3.7449e-05 689210000.0 851210.0 1180770.0 1229170.0 835710.0 724940.0 1048670.0 1241530.0 920760.0 2292900.0 1154690.0 False True 846627.1799383218 1220071.215659462 1402226.4518628346 941510.8003127231 817256.811943979 976177.9112036529 1181472.450794826 989471.7867245427 1727845.5182858873 1080996.695620156 0.7831912746528991 1.1286539733218337 1.2971607198654689 0.8709654748505857 0.7560215634841768 0.9030350556655775 1.0929473286845046 0.9153328504458506 1.5983818685908575 1.0 20.043930682387764 1.2714727545561133 24.999931334597473 1.299192194803605 0.9753180920186493 0.29144534657324117 0.20607721035021734 201.17126159768065 152808.9995587317 0.13447480815812546 0.04909875685800029 18.68412458811358 -1.2714727545561133 -0.32387410278495565 LDLVHTAALMLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDLVHTAALMLDK 13 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 202.32 9.48e-08 177547000.0 446080.0 436790.0 377200.0 349370.0 343540.0 482160.0 421650.0 426250.0 600930.0 454850.0 False True 443678.35484414746 451328.2911048693 430306.4813188256 393600.2061782867 387287.7826788905 448829.4140825547 401253.17864057916 458058.9394536424 452838.85354945203 425821.0835833228 1.0419360899431143 1.0599012320078212 1.0105335266580926 0.9243323577736111 0.9095082362287674 1.054032858837366 0.9423046300666879 1.0757075145247275 1.0634486431220649 1.0 18.699887857829818 1.6977147774458792 10.56852101187454 1.051572160760333 0.991810104424977 0.17749264821545374 0.05343162685193986 0.19391382575040278 37.79047092834499 0.026626445456389636 0.014437684217175154 49.85569530370877 -1.6977147774458792 -0.05976205633535603 LDMEIER ddPTM_BT-474_Trastuzumab_2h_R1 2 LDMEIER 7 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 121.52 0.010306999999999998 286360000.0 372360.0 431820.0 422680.0 386630.0 334450.0 377750.0 442270.0 345520.0 514390.0 430640.0 False True 370355.25513308553 446192.8676592974 482189.6699995796 435577.3183579327 377040.22505954176 351637.0316278524 420875.71046453 371304.45691500895 387625.4769728629 403156.1865105468 0.9186396427117629 1.1067494003285616 1.1960368862824464 1.0804182917990215 0.9352212310642 0.8722104320694912 1.0439520080476792 0.9209940696402917 0.9614771890960985 1.0 18.620979335153315 3.2448749606065133 23.33951088750154 0.9519176458299392 1.0863085821891572 0.36465444027670113 0.07685544770517835 65.17099214134797 240885.04886012402 0.021522772756097732 0.028388960955129813 1757.4175562684572 -3.2448749606065133 0.13439093635921795 LDMVPHLETDMMQGGVYGSGGER ddPTM_BT-474_Trastuzumab_2h_R1 1 LDMVPHLETDMMQGGVYGSGGER 23 0 Q9ULX6;V9GZ50;M0R1Y5;M0R010;M0QYT7 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 0 177.22 5.526e-17 206620000.0 74917.0 69088.0 47392.0 45245.0 51267.0 59104.0 49321.0 32305.0 84389.0 65010.0 False True 74513.65519606115 71387.55231542212 54064.38166135148 50973.01236092561 57795.54856668413 55018.27959585066 46935.15480548321 34715.76314146614 63592.461704665606 60861.006142138795 1.2243250632767566 1.1729604362553412 0.8883254663106616 0.8375315426412749 0.9496318288216367 0.9039988505506688 0.7711859822998615 0.5704106018291689 1.044880223572834 1.0 15.893230563948714 4.230822546679886 3.170434165647614 0.8342567763124945 1.219708385200775 0.5026810118121257 0.12795783834662977 0.1849014481432016 3.7705530120808053 0.035252071060975075 0.10372478379470099 17014.631461698034 -4.230822546679886 0.38545160888828056 LDNARQS(ph)AER ddPTM_BT-474_Trastuzumab_2h_R1 2 LDNARQSAER 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 LDNARQS(1)AER;LDNARQS(1)AER 96.464 0.0040712 637470000.0 176255.0 260790.0 263930.0 257710.0 224480.0 222750.0 296140.0 200420.0 343330.0 267120.0 True False 175306.06266377144 269470.2374991162 301089.0498793154 290336.0595763983 253066.19740279828 207351.81679709887 281814.5768353399 215376.35811213858 258720.9218862984 250072.17290706202 0.7010218715095622 1.0775698645977032 1.2040086123105491 1.1610090647082918 1.0119726415815524 0.8291678933591706 1.1269329712269696 0.8612567948221174 1.0345850115136586 1.0 17.931985003197 2.9975397835296125 24.946853436943446 0.9620254981730816 1.055336776179394 0.03416242854431217 0.14866411957147677 268.02968339575614 2717906.408937223 0.043333037247466066 0.05095479919477385 994.351157281259 -2.9975397835296125 0.09331127800631234 LDNILS(ph)GPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDNILSGPK 9 0 Q5VZ89-7;Q5VZ89-3;Q5VZ89;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-7 DENND4C DENN domain-containing protein 4C 1 LDNILS(1)GPK 55.426 0.082815 1129800000.0 247070.0 581840.0 581450.0 669530.0 693530.0 402990.0 495100.0 365100.0 196840.0 437690.0 True False 245739.80257205747 601206.1926702929 663313.1059460002 754292.4293515424 781846.9346256353 375132.24983642116 471150.1215343308 392345.61594023503 148331.41952086624 409756.24947473797 0.5997219148873717 1.4672288548154482 1.6187992417352852 1.8408320320152811 1.9080781211461113 0.9155009845909589 1.1498302274542316 0.9575097791508453 0.3619991634319444 1.0 18.64440642746492 2.705126191146682 20.967509506413545 0.9040566292164435 1.5128241528800137 0.3845650801211269 0.3843572038823692 101.50250504910436 63653.71127281065 0.12892034406946445 0.12156884802083293 507.13804386673706 -2.705126191146682 0.6087675236635702 LDNLHSCFCALQALIDSCAGPGSLATEPHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDNLHSCFCALQALIDSCAGPGSLATEPHVR 31 0 E5RIA4;E7ETB3;Q9ULA0-2;Q9ULA0;C9JBE1;E7EMB6 E5RIA4 DNPEP Aspartyl aminopeptidase 0 ; 270.14 1.3619999999999996e-60 493470000.0 481020.0 484020.0 424580.0 451930.0 427010.0 460730.0 520030.0 446720.0 664500.0 519250.0 False True 478430.24176634627 500130.31310373096 484357.1734844831 509144.29166257323 481387.1924134391 428880.81954176124 494874.1621924827 480056.51479819685 500742.8788438102 486111.0204477096 0.9841995380514326 1.0288396931283508 0.9963920855741736 1.0473827381935301 0.990282409088525 0.8822692790358071 1.0180270378085694 0.9875450146266247 1.03009982860011 1.0 18.89092631575326 5.122248399565271 15.617923089712987 0.9963273114131909 0.0002418719331607629 0.007908655446280166 0.042908705163931846 14717321.05607561 8027075.209214345 0.010383978523002676 518544719.4508689 132509.92237472636 -5.122248399565271 -0.9960854394800301 LDNLVAILDINR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDNLVAILDINR 12 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 ; 182.08 4.0326e-05 144900000.0 233610.0 269450.0 345860.0 215017.0 117287.0 172731.0 245890.0 167541.0 428580.0 206850.0 False True 232352.26971651096 278418.4803640351 394554.08173098933 242238.1301538103 132222.80423548626 160790.51253503788 233995.36130898164 180043.7601759595 322962.201677773 193648.65590680524 1.1998651301165348 1.4377506472238357 2.037473897680298 1.2509156287167265 0.6827974282409655 0.830320829143371 1.2083500410227144 0.9297444350071131 1.6677740424555323 1.0 17.563081962256383 3.483601520147359 24.837889826571896 1.0357449912299452 1.5626174632779632 0.34171861996699704 0.3132423544115299 283.25577151606416 1085677.7211938247 0.08548373729190585 0.12003367439923043 3045.099725622669 -3.483601520147359 0.526872472048018 LDNNLDSVSLLIDHVCSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDNNLDSVSLLIDHVCSR 18 0 A0A499FIZ0;Q9H7D7-2;Q9H7D7 A0A499FIZ0 WDR26 WD repeat-containing protein 26 0 244.46 3.7905e-24 189810000.0 157820.0 173070.0 166380.0 189940.0 175440.0 192290.0 212010.0 177620.0 210860.0 189940.0 False True 156970.31465545032 178830.53032697586 189804.85779911518 213986.3845250129 197781.24408565072 178997.44490197147 201754.2663431502 190874.9063360848 158896.37837924113 177817.86658418455 0.8827589582014002 1.005694949344766 1.0674116242939828 1.2034020463500783 1.112268681910065 1.0066336321565779 1.1346118937246017 1.073429290333537 0.8935906241120861 1.0 17.440040763381827 4.628899957511062 2.4291594406824353 1.07231007239121 0.8629216864669114 0.3071389971285542 0.08016546646699935 0.480335658966288 4.104346050605293 0.020139120774770314 0.18870008317293996 42550.038513053114 -4.628899957511062 -0.20938838592429865 LDNNWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDNNWGR 7 0 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 ; 164.52 0.0027796999999999995 372680000.0 424110.0 459610.0 414070.0 396290.0 383100.0 381990.0 374680.0 383080.0 456870.0 411070.0 False True 421826.63888305053 474907.84100988746 472367.4568390402 446460.2733674704 431885.5141883997 355583.930407739 356555.2969834037 411667.37484082446 344280.51024435187 384835.1606652666 1.0961229170272189 1.2340552255903845 1.227453998804205 1.16013378973915 1.1222610570245113 0.9239902346579745 0.926514345433054 1.0697239153750215 0.8946181259768268 1.0 18.553881092151926 2.9182299056597 3.518967411504379 0.9731698573721823 1.1843294979293078 0.7573963807610388 0.05840503616059493 0.12378774650829581 2.9229217686178095 0.018796140093500408 0.020589669242368814 828.3805735685091 -2.9182299056597 0.21115964055712544 LDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_BT-474_Trastuzumab_2h_R1 6 LDNTPASPPRSPAEPNDIPIAK 22 1 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;E9PGB3;O95359-2;Q4VXL4;H0Y911;H0Y8P9 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 2 LDNT(0.002)PAS(0.998)PPRS(1)PAEPNDIPIAK;LDNT(0.001)PAS(0.999)PPRS(1)PAEPNDIPIAK;LDNTPAS(1)PPRS(1)PAEPNDIPIAK;LDNTPAS(1)PPRS(1)PAEPNDIPIAK;LDNT(0.031)PAS(0.969)PPRS(1)PAEPNDIPIAK;LDNTPAS(1)PPRS(1)PAEPNDIPIAK 243.92 4.9349999999999995e-31 4531750000.0 5380460.0 4489560.0 4279050.0 3805150.0 4170530.0 5065120.0 4628700.0 4708970.0 5502590.0 4882760.0 True False 5351492.2011853 4638992.290603665 4881503.045830645 4286881.5998491775 4701622.274832021 4714980.176409966 4404792.097648874 5060377.253065154 4146550.4254283817 4571138.076458853 1.1707133128936171 1.014844052621 1.0678966515953996 0.9378149441440891 1.0285452323230304 1.031467458988363 0.9636095046731026 1.1070278710516008 0.9071155489226901 1.0 22.124121967179676 5.8153055444516015 1.3547099542794827 1.010047202958998 3.2250361560080973 0.4296740088104025 0.0564161781438113 20.393652309178094 3.2053874222362206 0.014469881118623368 118.91754444343195 653590.2191661462 -5.8153055444516015 2.214988953049099 LDNTPAS(ph)PPRSPAEPNDIPIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDNTPASPPRSPAEPNDIPIAK 22 1 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;E9PGB3;O95359-2;Q4VXL4;H0Y911;H0Y8P9 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 1 LDNTPAS(0.75)PPRS(0.25)PAEPNDIPIAK 151.95 2.7163e-08 345710000.0 236060.0 176440.0 177300.0 201000.0 190200.0 258500.0 254140.0 281890.0 347630.0 295290.0 True False 234789.07918873135 182312.69873976766 202262.2988807735 226446.5793910059 214420.84259627687 240630.50344354665 241846.27729092064 302926.06320841593 261961.2445033466 276444.33938951226 0.8493177314002139 0.6594915241975262 0.7316565039003542 0.819139866965917 0.7756383909679416 0.8704482934067114 0.8748461908281555 1.0957940534336308 0.9476093635407782 1.0 18.07662950509462 2.273595929495921 1.3053496368703907 1.024214320192104 0.7563297173552435 0.7219599785832502 0.06430464399721728 0.21113313353994176 0.7044514855071867 0.038269606692362415 0.022828232925516317 187.75691009787383 -2.273595929495921 -0.26788460283686044 LDNVLLDTYQDAS(ph)S ddPTM_BT-474_Trastuzumab_2h_R1 2 LDNVLLDTYQDASS 14 0 Q9HD40-3;Q9HD40 Q9HD40-3 SEPSECS O-phosphoseryl-tRNA(Sec) selenium transferase 1 LDNVLLDTYQDAS(0.5)S(0.5);LDNVLLDTY(0.001)QDAS(0.5)S(0.5) 100.55 0.0018241 17910300.0 53653.0 59113.0 49072.0 55279.0 54576.0 58869.0 54054.0 54574.0 63516.0 60540.0 True False 53364.1382094087 61080.54047043689 55980.91105852972 62277.315732116425 61525.93010270454 54799.52459272013 51439.201513667445 58646.589001156884 47863.33287079529 56676.28536909835 0.941560263907212 1.077708958388086 0.9877307712380923 1.0988249375650143 1.085567441514972 0.9668863129586562 0.9075965578667525 1.034764163163255 0.8445037030759932 1.0 15.790457584961398 2.6169782460018003 6.597357906895 0.9549839152147311 1.0407883548580155 0.3116947668341786 0.06501670410215354 0.310583799770934 15.537619112291882 0.020377280851740828 0.01916615739417196 413.9789379165488 -2.6169782460018003 0.08580443964328432 LDNWLNELETYCTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDNWLNELETYCTR 14 0 H0Y6T8;Q9NP72;Q9NP72-2;Q5W0J0;A0A087X163 H0Y6T8 RAB18 Ras-related protein Rab-18 0 108.17 0.0041778 0.0 10175.0 11078.0 8764.2 13666.0 11289.0 7888.8 11581.0 15924.0 15868.0 11243.0 False True 10120.21893054877 11446.724533207584 9998.12318020799 15396.114198793446 12726.587234854727 7343.465824237721 11020.782786283755 17112.329740433564 11957.544020306372 10525.462114383423 0.9614987751197286 1.087527028154443 0.9498987380844014 1.4627494766005666 1.2091238462075111 0.697685835019311 1.0470592802973904 1.6258031765701717 1.1360588153147173 1.0 13.361595954930788 LDPAQS(ph)ASRENLLEEQGSIALR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDPAQSASRENLLEEQGSIALR 22 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 LDPAQS(0.675)AS(0.325)RENLLEEQGSIALR 258.85 2.0625e-37 1620900000.0 94217.0 90840.0 75052.0 57383.0 77675.0 72281.0 78378.0 90042.0 87805.0 73979.0 True False 93709.74614049269 93863.5544860604 85618.66923632153 64647.68191638842 87566.45083420504 67284.38460117223 74586.55670696394 96761.39126401157 66166.63427672055 69257.59688339166 1.3530608966734852 1.3552817121867158 1.2362350570793967 0.9334381327904735 1.264358781920196 0.9715090853420499 1.0769440474890373 1.3971231405404925 0.9553700569213319 1.0 16.07968470897657 4.010924717431182 5.516385101208288 1.118159779598816 1.3443055245009428 0.3614992783428823 0.14051846595644416 0.19933153125041975 20.211110449199143 0.03642780664736551 0.07671310684839495 10254.741505184935 -4.010924717431182 0.2261457449021267 LDPAQSAS(ph)RENLLEEQGSIALR ddPTM_BT-474_Trastuzumab_2h_R1 5 LDPAQSASRENLLEEQGSIALR 22 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 LDPAQS(0.011)AS(0.989)RENLLEEQGSIALR;LDPAQS(0.134)AS(0.866)RENLLEEQGSIALR;LDPAQS(0.35)AS(0.65)RENLLEEQGSIALR;LDPAQS(0.01)AS(0.99)RENLLEEQGSIALR;LDPAQS(0.03)AS(0.97)RENLLEEQGSIALR 306.35 1.099e-56 3595590000.0 273728.0 255918.0 256261.0 250499.0 211847.0 240861.0 228643.0 219368.0 283655.0 246521.0 True False 272254.27886203956 264436.075924302 292340.3213394579 282212.147715759 238824.45973445565 224210.84599580683 217582.66458891958 235738.35408813308 213752.02603226624 230787.81872275355 1.1796735216302723 1.145797370882777 1.2667060287555627 1.2228208112438625 1.0348226394970896 0.9715020802945944 0.9427822741819083 1.0214505921186707 0.926184177376569 1.0 17.816207553134017 3.1304392554548466 3.857946837340746 0.9772326569202419 1.2043673319631583 0.8882888459086763 0.03881569411759905 0.07161334382949293 2.001765589674667 0.011921153094228297 0.014610362648296491 1350.3279449727736 -3.1304392554548466 0.2271346750429164 LDPDAIPSPIQVIEDDRNNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDPDAIPSPIQVIEDDRNNR 20 1 P53992;G5EA31 P53992 SEC24C Protein transport protein Sec24C 0 130.27 1.4993e-05 27534000.0 19653.0 23296.0 22648.0 20932.0 24874.0 22239.0 22967.0 23546.0 24026.0 26812.0 False True 19547.190431653562 24071.39327727062 25836.64154005505 23581.989053793703 28041.556460251242 20701.670274974993 21855.998467539866 25303.122084165338 18105.114231905784 25100.835205091935 0.7787466142835054 0.9589877420647548 1.0293140179978493 0.939490214612854 1.1171563109805507 0.8247402967203047 0.87072793749533 1.0080589700470353 0.7212952909325103 1.0 14.61544774875328 LDPDSIPS(ph)PIQVIENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDPDSIPSPIQVIENDR 17 0 O94855;O94855-2 O94855 SEC24D Protein transport protein Sec24D 1 LDPDS(0.002)IPS(0.998)PIQVIENDR 70.98 0.033027999999999995 10538000.0 20038.0 18451.0 19533.0 16432.0 16547.0 21555.0 19494.0 18492.0 24914.0 20241.0 True False 19930.117634431084 19065.13038113498 22283.07661612041 18512.28951518908 18654.16236824706 20064.953585012197 18551.000745688263 19871.966940473358 18774.278530496147 18949.202050808046 1.05176553508654 1.0061178476020307 1.1759374646158358 0.9769429586297363 0.9844299679865198 1.0588811883061098 0.9789858536495576 1.0486967676628876 0.9907688186635574 1.0 14.209849477466651 LDPELHLDIK ddPTM_BT-474_Trastuzumab_2h_R1 4 LDPELHLDIK 10 0 Q12905;B4DY09 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ;;; 147.74 2.6346e-05 3145380000.0 5989290.0 5624870.0 5001430.0 4680980.0 5050380.0 6276750.0 5864890.0 5813260.0 8241400.0 6143130.0 False True 5957044.328112673 5812090.397644281 5705587.870791133 5273591.588048305 5693515.957052492 5842853.046380197 5581182.864644477 6247074.980336148 6210417.399102153 5751070.184001805 1.0358149244437742 1.0106102363021443 0.9920915044060505 0.9169756965787448 0.9899924318243556 1.0159592666133186 0.9704598772190406 1.0862456517595833 1.079871606571269 1.0 22.45539901329266 1.7438144069304355 12.084663912662128 1.0616576971577658 0.9892840834827689 0.3909140200072432 0.03696624024650357 0.07952119716928488 81.89389916846355 0.017602999973110697 0.009644742071315824 55.438874771498014 -1.7438144069304355 -0.07237361367499695 LDPHLVLDQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDPHLVLDQLR 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ; 116.54 0.00097542 350800000.0 1135310.0 1586710.0 2337400.0 1055880.0 362390.0 669360.0 1245430.0 569240.0 2825200.0 980400.0 False True 1129197.6171047983 1639522.6831635516 2666485.602954991 1189554.2997381839 408538.21844618686 623088.7187039558 1185183.7928953797 611719.5793421507 2128967.3157404545 917830.03263733 1.2302905515742562 1.7863031551195603 2.9052063106858723 1.296050747348145 0.4451131515845876 0.6788715737635512 1.2912889650056716 0.666484596918681 2.3195659763093537 1.0 19.807867488888085 3.4922903275314643 24.878863578143605 1.0094646847496083 1.9794134420719574 0.30041033695123953 0.6161873758519913 724.5357501572769 1188312.5755702404 0.1628983452178685 0.24329341142199862 3106.635692017666 -3.4922903275314643 0.9699487573223491 LDPHNHVLYSNR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDPHNHVLYSNR 12 0 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 77.91199999999998 0.015698 4012420000.0 4444570.0 5893680.0 7132710.0 5120600.0 3020000.0 4096660.0 5546750.0 969480.0 8400330.0 3833300.0 False True 4420640.9289581515 6089847.575995201 8136933.569373287 5768867.434973058 3404579.099057599 3813467.5367003516 5278432.511857311 1041827.5205196898 6330181.230155044 3588655.5121467607 1.231837637799258 1.6969719036509605 2.267404475528974 1.6075288963921974 0.9487060230590242 1.0626451950577744 1.4708663158085389 0.290311376222473 1.7639422922397703 1.0 21.77501200967774 3.313736576629073 4.986692366393422 1.0275212429173306 1.7576452565150784 0.3232947551520098 0.42861293797616923 0.2138533014376142 9.652579241523643 0.12000510917647672 0.16234588110036824 2059.3804074405625 -3.313736576629073 0.7301240135977478 LDPITGR ddPTM_BT-474_Trastuzumab_2h_R1 6 LDPITGR 7 0 Q14103-3;Q14103;H0Y8G5;H0YA96;D6RAF8;D6RD83;D6RF44;Q14103-2;Q14103-4;D6RBQ9 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ;;;;; 149.4 0.004697 2638340000.0 445941.0 742855.0 667604.0 738900.0 714251.0 558129.0 575395.0 494005.0 514417.0 517519.0 False True 443540.1032047033 767580.4796096693 761596.8402820068 832444.6642388756 805206.6311526456 519546.8559243455 547560.9456276445 530870.1616065621 387645.8231846448 484490.49434969283 0.9154774105528011 1.584304518997744 1.5719541439182616 1.7181857517271295 1.6619657981802798 1.072357171055971 1.13017892407282 1.0957287455538676 0.8001102760642647 1.0 18.88610883483653 2.699813999050531 9.33229808286875 1.040025794052258 1.5126914754920007 0.5229004066113572 0.2238835385307385 0.3951083459871478 92.46534116685889 0.07329392887603103 0.06937020192527699 500.9726296074201 -2.699813999050531 0.47266568143974275 LDPNKYPVPENWLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDPNKYPVPENWLHK 15 1 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ; 115.8 0.00029972 1686000000.0 2944500.0 2533500.0 2533200.0 2167800.0 2350700.0 3391500.0 3051000.0 2793400.0 3649000.0 3152900.0 False True 2928647.1391647044 2617826.0159669085 2889852.541030881 2442243.257730458 2650047.7113095038 3157053.58773226 2903411.4740481605 3001857.692597784 2749752.8440949027 2951679.222666503 0.9921969557786189 0.8868938046736676 0.9790537260414874 0.8274080865481622 0.8978101993466249 1.069578822620239 0.9836473596969192 1.016999973962601 0.9315893214205089 1.0 21.493104512601157 2.762759418641844 24.814053633863924 1.0013009734749152 0.9135246556007598 0.3762680556206911 0.05379310793424977 718.66205889291 736932.8887110313 0.01590094973792614 0.01685730718291559 579.1078055456879 -2.762759418641844 -0.08777631787415541 LDPPPS(ph)PHANR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDPPPSPHANR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211;H7C0A7 A0A087X1U1 AGAP1 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 1 LDPPPS(1)PHANR;LDPPPS(1)PHANR 64.945 0.070315 119780000.0 235480.0 265050.0 239010.0 271040.0 238770.0 262980.0 256310.0 205300.0 245100.0 229010.0 True False 234212.20184428728 273872.0290238915 272660.530487838 305353.6362096425 269175.9441993325 244800.81158833246 243911.30610071617 220620.52849227647 184698.3891717348 214394.38573467487 1.0924362643252146 1.2774216455594296 1.2717708514311135 1.4242613451059993 1.255517691272256 1.1418247299222064 1.1376758083701415 1.0290406054070222 0.8614889263019669 1.0 17.709907601413498 1.9554094090006053 1.2246511522187071 0.93626459361038 1.2689543932242984 0.6873833779313436 0.08685521863245876 0.2635919360207198 0.730530222926047 0.06747601225275933 0.030375597356930698 90.242144860218 -1.9554094090006053 0.3326897996139184 LDPPPS(ph)PHANRK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDPPPSPHANRK 12 1 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211;H7C0A7 A0A087X1U1 AGAP1 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 1 LDPPPS(1)PHANRK;LDPPPS(1)PHANRK 82.102 0.007456799999999999 389440000.0 307210.0 302650.0 296990.0 291880.0 269940.0 349240.0 328460.0 316220.0 383010.0 336720.0 True False 305556.0154942398 312723.5222942114 338803.6105166441 328831.9780728693 304315.25894026796 325097.8608225312 312571.1349609499 339817.942132624 288622.3175710579 315230.2413195042 0.9693106036249263 0.9920479741575551 1.074781433083531 1.0431485783103498 0.9653745708738227 1.0313028961362423 0.9915645581863475 1.0779991815195127 0.9155920966304827 1.0 18.26604641947494 LDPPPS(ph)PHSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDPPPSPHSNR 11 0 Q96P47;Q96P47-2;Q96P47-4;H0Y873 Q96P47 AGAP3 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 1 LDPPPS(0.975)PHS(0.025)NR;LDPPPS(0.996)PHS(0.004)NR 64.675 0.043499 730020000.0 1490150.0 1689430.0 1480380.0 1453050.0 1405660.0 1556590.0 1517820.0 1384860.0 1664850.0 1408650.0 True False 1482127.1979712283 1745661.6562680008 1688804.6363063722 1637005.9810154268 1584662.4690004324 1448986.5971187244 1444397.2479645305 1488205.2853765902 1254570.025347053 1318748.7509940604 1.123888987082653 1.3237257324051586 1.280611363637969 1.2413327252681507 1.2016409250101119 1.098758649838714 1.0952785713546704 1.1284979676794349 0.9513336216632394 1.0 20.330738296747388 2.223183541023743 0.6692518332956131 0.9960925897782112 1.2593697931289405 0.6968176590038719 0.06197330429602785 0.4169575355914888 0.36449688224541493 0.05349380129560473 0.03563523233560797 167.17969979179603 -2.223183541023743 0.26327720335072924 LDQEVAEVDKNIELLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDQEVAEVDKNIELLK 16 1 F5H442;Q99816;Q99816-2 F5H442 TSG101 Tumor susceptibility gene 101 protein 0 ; 199.56 3.4492e-11 417510000.0 358000.0 311150.0 284710.0 267990.0 252240.0 369540.0 368920.0 343070.0 555130.0 368480.0 False True 356072.5677775392 321506.4396558529 324794.6932563172 301917.50652236637 284361.26885638724 343994.5696035909 351073.93018874055 368671.62547416106 418325.64986089495 344963.2909284006 1.0322042290912756 0.9320018915362902 0.9415340756467054 0.8752163330475397 0.8243232724591797 0.9971918133022137 1.0177138826681946 1.0687271230569322 1.212667147089924 1.0 18.39608332092673 2.072765242415079 1.7445359218992271 1.1031849743250877 0.9222769971187482 0.5142919606591702 0.07135127376536576 0.28445617589615535 1.642817750102265 0.04238978349421583 0.022546147908493838 118.24022362294272 -2.072765242415079 -0.18090797720633944 LDQLIYIPLPDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDQLIYIPLPDEK 13 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 144.57 9.6264e-05 765970000.0 1928820.0 1829500.0 1724260.0 1645830.0 1733290.0 2106500.0 2114200.0 2041550.0 2863200.0 2146400.0 False True 1918435.447432049 1890393.8015438938 1967020.820463412 1854191.9092492468 1954014.2074852819 1960882.6131676268 2011928.06897169 2193900.827780843 2157602.724914371 2009414.9143745066 0.9547234041652479 0.9407682743970964 0.9789022697065572 0.9227521384384778 0.9724294338153303 0.975847546039546 1.001250689730232 1.0918107614741992 1.0737467456222165 1.0 20.938344059281768 2.049369432083802 2.5724919789320717 1.063737204168993 0.9557794016309517 0.708576335279077 0.02774425499280305 0.13151861192477798 1.6822661260960619 0.013117985361072011 0.007735915151590017 112.03905370989064 -2.049369432083802 -0.10795780253804133 LDQPMTEIVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDQPMTEIVSR 11 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 143.24 8.672600000000001e-05 618480000.0 305984.0 329996.0 307679.0 326954.0 302367.0 306926.0 328540.0 302750.0 384410.0 342864.0 False True 304336.61614201847 340979.7173732059 350997.5288061906 368346.34287665144 340871.6451803807 285708.9280460889 312647.26505532075 325342.74233335 289677.3063300966 320982.12597936136 0.9481419415908126 1.0623012615821803 1.0935111347251751 1.1475602940592884 1.0619645693364814 0.8901085291723052 0.9740332552829545 1.013585231080029 0.902471766757263 1.0 18.29213343695917 2.8503169086641345 8.27052381245534 0.9632234241739996 1.0697753943879238 0.44760518995639587 0.058756692175410796 0.2965812139454246 19.956850883613097 0.018518714043476596 0.01966130107535668 708.4625674396817 -2.8503169086641345 0.10655197021392415 LDQPVS(ph)APPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR 183.73 2.226e-05 10467930000.0 6196340.0 5503590.0 4939050.0 5389670.0 4663530.0 5457720.0 4988780.0 4787660.0 5975500.0 5258590.0 True False 6162979.5939181 5686773.666159595 5634425.309007812 6072001.669384687 5257402.90259208 5080440.662490957 4747453.652409696 5144939.500444878 4502918.092597728 4922982.284094593 1.2518792955704412 1.1551481069783038 1.1445146425189836 1.2333990493937794 1.067930493997094 1.0319843479642592 0.9643450612747475 1.0450859262824073 0.9146728208114767 1.0 22.23110111720594 2.9871447551658594 2.4008802098605284 0.9944124228706086 1.1900244569824372 0.8106540065567278 0.046389663572351705 0.12363298555983712 1.429721284931056 0.014572044879064557 0.016860028136828503 970.8335028936712 -2.9871447551658594 0.1956120341118286 LDQPVSAPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR 182.17 1.8066e-05 24130600000.0 6228400.0 7775100.0 7087100.0 6769500.0 6913700.0 7179900.0 6793000.0 6169300.0 7293300.0 6371000.0 True False 6194866.986440293 8033889.503352805 8084902.077822511 7626518.005907535 7794118.714289581 6683570.412666622 6464396.638219986 6629684.493070634 5495963.940213032 5964397.325512487 1.0386408966991485 1.3469742314094573 1.3555270778557362 1.2786737015801057 1.3067738933069615 1.12057766240319 1.0838306513499312 1.1115430665077266 0.9214617404350731 1.0 22.507944937014813 2.187932437156521 1.0588585199089602 0.9964123708697797 1.2769509095169032 0.580084515698747 0.09515346397534702 0.37492057801447204 0.7955281854110404 0.06840446840752377 0.036961978741722995 154.14606305042358 -2.187932437156521 0.2805385386471234 LDQT(ph)T(ph)MNVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDQTTMNVIK 10 0 O60882 O60882 MMP20 Matrix metalloproteinase-20 2 LDQT(1)T(1)MNVIK 64.82 0.02288 0.0 59820.0 109230.0 121610.0 116070.0 147290.0 138550.0 173090.0 140450.0 141590.0 118430.0 True False 59497.93576662677 112865.65451907064 138731.63094693108 130764.45009907488 166046.5084437728 128972.36461161857 164716.97543198822 150931.09219064921 106697.04170879633 110871.69600697573 0.5366377345114602 1.0179843781948592 1.2512808583554316 1.1794213925513284 1.4976456068041533 1.1632577948794434 1.4856539708892402 1.3613130999741634 0.9623469789988894 1.0 16.758531587077027 4.775928557906034 1.5915685466839722 1.2784835774813454 0.2093017113960263 0.5970986171003614 0.1727429318635379 0.6989023802358215 1.5689095859515376 0.04372101000272005 1.1920399087504217 59693.70814609618 -4.775928557906034 -1.0691818660853192 LDQVEQELNELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDQVEQELNELR 12 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 133.32 0.00038451 27522000.0 30662.0 34863.0 29673.0 28299.0 33263.0 38024.0 36030.0 29183.0 44730.0 32122.0 False True 30496.919198868443 36023.39387987147 33850.70047766043 31881.650498438175 37498.84588475264 35395.49037886818 34287.09125203384 31360.78364827134 33706.890851292155 30071.9464589722 1.014131866737527 1.1979069572040826 1.1256571144752356 1.0601791454349319 1.2469710245032897 1.1770269153398167 1.140168671782269 1.0428584558388172 1.1208749289733935 1.0 14.876130631426228 1.170420243014613 0.9967133764213506 1.0115392064351831 1.140040726063389 0.2377709944849099 0.06789064707165748 0.6817180072859745 1.4500901347061919 0.0625843877470375 0.021353474793820663 14.805403331451965 -1.170420243014613 0.12850151962820577 LDRAS(ph)PDLWPEQLPGVAEFAASFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDRASPDLWPEQLPGVAEFAASFK 24 1 Q52LA3 Q52LA3 LIN52 Protein lin-52 homolog 1 LDRAS(1)PDLWPEQLPGVAEFAASFK;LDRAS(1)PDLWPEQLPGVAEFAASFK 264.01 1.9901000000000002e-44 1930020000.0 908110.0 873490.0 832060.0 705600.0 748470.0 970340.0 981220.0 890540.0 1136720.0 978920.0 True False 903220.836660505 902563.5866141437 949206.8156048304 794928.8876532029 843783.2179707427 903262.6797346665 933754.639975593 956996.6168704919 856590.5872676233 916444.487504424 0.9855707017454726 0.9848535278682515 1.0357493864026852 0.867405389515604 0.9207139433709229 0.9856163598019418 1.0188883808099565 1.0442494116326628 0.9346890062050685 1.0 19.805687968374226 2.4844170998063393 12.057811246218701 1.0073879681215385 0.9588586117461749 0.12684497252153348 0.04893967986624691 0.8030457018202267 1310.51847853971 0.017358213010156255 0.015293881342620868 305.0823617852111 -2.4844170998063393 -0.0485293563753636 LDRLDLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDRLDLAR 8 1 O14579;M0QXB4;O14579-3;O14579-2 O14579 COPE Coatomer subunit epsilon 0 ;; 144.5 0.00053302 721720000.0 750850.0 1089790.0 1153530.0 978980.0 658840.0 825830.0 1042590.0 730933.0 1512960.0 937860.0 False True 746807.5070272768 1126063.0013580346 1315936.9973375 1102918.7676229202 742739.368749375 768742.3158947172 992155.9386194268 785478.9320625673 1140111.2806253282 878004.9718576575 0.8505732096792152 1.2825246296447992 1.498780803659094 1.2561646038169882 0.8459398210216379 0.8755557662369889 1.1300117543984425 0.8946178634964603 1.298524857112271 1.0 19.74386958373512 3.2609875711167646 24.966528577089623 0.9973212872344196 1.2461026438370097 0.22135880992774482 0.1945112702764745 315.1199667094953 350801.02393399616 0.053919813892333586 0.07295369773856192 1823.843505795647 -3.2609875711167646 0.24878135660259015 LDRPAGGPSAES(ph)PRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_BT-474_Trastuzumab_2h_R1 3 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 LDRPAGGPS(0.04)AES(0.912)PRPS(0.024)S(0.024)AYNGDLNGLLVPDPLCSGDSTSANK;LDRPAGGPS(0.175)AES(0.82)PRPS(0.002)S(0.002)AYNGDLNGLLVPDPLCSGDSTSANK;LDRPAGGPS(0.047)AES(0.952)PRPS(0.001)S(0.001)AYNGDLNGLLVPDPLCSGDSTSANK 351.58 2.4958999999999987e-154 3028440000.0 1118673.0 1076355.0 922761.0 842947.0 930971.0 1308332.0 1197048.0 1159386.0 1568260.0 1228530.0 True False 1112650.1888642549 1112180.8255046622 1052677.7280176044 949664.003770698 1049524.6385525668 1217890.0883222532 1139142.2150725666 1245905.2705628192 1181783.3366073642 1150124.1636025517 0.9674174528940279 0.967009354903875 0.9152731168783427 0.8257056358124419 0.9125315959497142 1.0589205295082553 0.990451510473803 1.0832789276074775 1.0275267436392659 1.0 20.133358187488746 2.744023412403011 24.73634846149794 1.0374670969560384 0.9150999701057814 0.6230721795770717 0.04438660982352037 260.365366993294 1178974.2557836107 0.014649353678318463 0.015140328517461499 554.6556131092303 -2.744023412403011 -0.12236712685025708 LDS(ph)ELTARKELEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSELTARKELEQK 14 2 Q8IUG5-2;Q8IUG5;Q8IUG5-3 Q8IUG5-2 MYO18B Unconventional myosin-XVIIIb 1 LDS(0.5)ELT(0.5)ARKELEQK 82.259 0.0058501 209510000.0 138210.0 450540.0 427830.0 571680.0 512110.0 367120.0 429020.0 324710.0 314000.0 501000.0 True False 137465.89271657474 465535.95154281904 488064.74523497606 644054.6293843285 577324.1729862212 341741.8585075234 408266.6635844454 348941.50904397044 236618.90738443393 469025.7510723208 0.2930881564653758 0.99255947136906 1.0405926414895705 1.373175412889045 1.2309008016431946 0.7286206732278735 0.8704568195904734 0.7439708976451612 0.5044902264821464 1.0 18.83930760810382 2.7041137878115182 24.519694581443414 0.7615681893309845 1.0109598984325185 0.12030505387004575 0.2884998073282979 994.7185512641415 708052.1521936576 0.09632922039221223 0.09082485602239591 505.95720852272194 -2.7041137878115182 0.24939170910153408 LDS(ph)ET(ph)ESDHDDAFLSIMSPEIQLPLPPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSETESDHDDAFLSIMSPEIQLPLPPGK 29 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 2 LDS(0.614)ET(0.671)ES(0.6)DHDDAFLS(0.109)IMS(0.007)PEIQLPLPPGK 75.654 0.0098733 10044000.0 9096.1 7375.3 9831.5 6799.1 8183.3 10068.0 10142.0 9098.3 13161.0 10010.0 True False 9047.127608271718 7620.782402037004 11215.689743070085 7659.865362872575 9225.394748780818 9372.022857522745 9651.39271379759 9777.26134623127 9917.647898364765 9371.15323000784 0.9654230793389929 0.8132171372072026 1.196831325642586 0.8173876976362456 0.9844460465377644 1.0000927983454715 1.0299044820750962 1.0433359807758782 1.058316693254675 1.0 13.194010883969879 2.575277348600643 2.2374753621511636 1.0368718134029435 0.9527078814827137 0.11954472269420369 0.10007998518772608 0.6499301657467279 6.460145802043548 0.03624266881335981 0.0322701923206021 376.07749775898964 -2.575277348600643 -0.08416393192022986 LDS(ph)PDPFK ddPTM_BT-474_Trastuzumab_2h_R1 5 LDSPDPFK 8 0 P42566;B1AUU8;P42566-2 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 LDS(1)PDPFK;LDS(1)PDPFK;LDS(1)PDPFK;LDS(1)PDPFK;LDS(1)PDPFK 137.46 0.00078381 1004050000.0 2900650.0 1913140.0 1655160.0 1444710.0 1504360.0 2463050.0 2251430.0 2225010.0 3186310.0 2014900.0 True False 2885033.222692515 1976817.7083824503 1888192.1410913777 1627610.1378705471 1695931.3289597004 2292785.150896045 2142519.7296021823 2391051.544571849 2401086.5948665463 1886307.3569573236 1.5294608336502324 1.0479828226780195 1.0009991924842483 0.8628552138480424 0.899074757199322 1.2154886330901997 1.1358274788569651 1.2675832152977946 1.2729031597160172 1.0 20.847133338778484 2.6821571908284696 24.97640249341541 1.1971171279178465 1.0518304530202978 0.07371030247307364 0.18531958175844102 627.6168734481683 277918.56998400245 0.06131254503712037 0.05780604065590429 481.01341747177526 -2.6821571908284696 -0.14528667489754876 LDS(ph)PPPS(ph)PITEASEAAEAAEAGNLAVSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 LDS(1)PPPS(0.997)PIT(0.003)EASEAAEAAEAGNLAVSSR;LDS(0.686)PPPS(0.686)PIT(0.314)EAS(0.314)EAAEAAEAGNLAVSSR;LDS(1)PPPS(0.993)PIT(0.007)EASEAAEAAEAGNLAVSSR;LDS(0.986)PPPS(0.572)PIT(0.424)EAS(0.018)EAAEAAEAGNLAVSSR;LDS(1)PPPS(0.987)PIT(0.013)EASEAAEAAEAGNLAVSSR;LDS(0.982)PPPS(0.888)PIT(0.111)EAS(0.02)EAAEAAEAGNLAVSSR 304.89 1.0427999999999998e-81 966083000.0 339937.1 299196.3 288066.6 285844.0 292318.4 337087.5 336930.4 301058.9 406895.3 352938.9 True False 338106.916424162 309154.8679775176 328623.873360227 322031.8210917546 329543.4155330989 313785.4345436231 320631.78935288015 323525.4438641183 306621.40543268 330414.03723580524 1.0232825434800357 0.9356590009427606 0.9945820586481298 0.9746311742256019 0.9973650583674053 0.9496734375110254 0.9703939700481192 0.9791516322087407 0.9279914618574595 1.0 18.33391545362849 2.7408917567542055 24.983327519449578 0.9658389748851931 0.9823017626294054 0.11193210234401352 0.027111303361459674 564.0632021049473 6045232.643750423 0.007888245462746454 0.008040407782822476 550.670430596155 -2.7408917567542055 0.01646278774421228 LDS(ph)PPPSPITEASEAAEAAEAGNLAVSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 LDS(0.984)PPPS(0.006)PIT(0.009)EAS(0.001)EAAEAAEAGNLAVSSR;LDS(0.452)PPPS(0.452)PIT(0.08)EAS(0.015)EAAEAAEAGNLAVSSR;LDS(0.996)PPPS(0.003)PIT(0.001)EASEAAEAAEAGNLAVSSR;LDS(0.967)PPPS(0.024)PIT(0.008)EASEAAEAAEAGNLAVSSR;LDS(0.981)PPPS(0.016)PIT(0.003)EASEAAEAAEAGNLAVSSR;LDS(0.993)PPPS(0.006)PIT(0.001)EASEAAEAAEAGNLAVSSR 221.26 1.2065e-34 362307000.0 385852.3 391101.1 342954.6 368084.10000000003 382261.1 454045.0 443834.8 428260.6 529488.6 490906.6 True False 383774.91408902104 404118.66368789296 391239.62666517816 414683.50931948697 430939.785245949 422657.9378569642 422364.8151104137 460219.58063526277 399003.22931373795 459576.52050171443 0.8350620559772252 0.879328350470823 0.8513046450633864 0.9023165693207775 0.9376888635988125 0.9196682576289 0.9190304470936045 1.0013992449676201 0.8681975939026447 1.0 18.80994556784943 7.999999999865433 0.16102311629964652 1.0006992986130736 0.35154304392940355 0.5563342581188895 0.03598324554333698 42.5659403482377 0.4414802736972749 0.10057046122871859 6.572781324507335 99999999.9690148 -7.999999999865433 -0.64915625468367 LDS(ph)S(ph)EMDHSENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 LDS(0.979)S(0.963)EMDHS(0.058)ENEDYTMSSPLPGK 109.41 0.00061053 175860000.0 107420.0 100410.0 96868.0 74427.0 88751.0 140280.0 111560.0 99339.0 142690.0 110040.0 True False 106841.66265548405 103752.08615087323 110506.1724082504 83849.45056882786 100052.91378160976 130582.77378360057 106163.41659941418 106752.18061322102 107525.96144804104 103017.15299001614 1.037124979233687 1.0071340853394417 1.0726968199068756 0.8139367875654075 0.9712257704433586 1.2675828247384777 1.0305411624965306 1.0362563661953157 1.0437675506181177 1.0 16.652525049450094 LDS(ph)SEMDHS(ph)ENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 LDS(0.943)S(0.263)EMDHS(0.794)ENEDYTMSSPLPGK 81.847 0.0049857 179470000.0 149770.0 154680.0 109460.0 116400.0 120350.0 166690.0 150510.0 142380.0 206420.0 145120.0 True False 148963.65496101129 159828.43029396544 124871.01655662413 131136.2280652391 135675.85912966286 155167.11264605352 143229.25629596473 153005.11859099055 155550.55688628944 135858.3173565172 1.096463270409152 1.1764346372298007 0.9191267710826981 0.9652425454461764 0.9986569962707875 1.1421244990019013 1.0542546020211987 1.1262109053616276 1.144946882258936 1.0 17.051743365662407 2.7442975757934196 24.75126320310086 1.0999733239077196 1.029365368110098 0.13667414969192881 0.07740246176706021 817.2201912578222 3525770.9838935398 0.025141353294971 0.025969097369633716 555.005869164464 -2.7442975757934196 -0.07060795579762158 LDSEDKDK ddPTM_BT-474_Trastuzumab_2h_R1 6 LDSEDKDK 8 1 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;; 120.12 0.0014255999999999993 29572800000.0 54878800.0 33035000.0 26888700.0 25019700.0 25335800.0 27475100.0 42347600.0 42925500.0 78050900.0 43320900.0 False True 54583338.638407916 34134550.004920796 30674395.239229865 28187191.454672374 28562163.952948168 25575811.006428603 40299084.804458216 46128818.78127243 58816301.5234768 40556123.0731115 1.3458717082007376 0.8416620578694276 0.7563443671361879 0.6950169128311068 0.7042626806674412 0.6306276110347746 0.9936621587771121 1.1374070124532096 1.450244674951973 1.0 25.27341640998161 1.811786573674303 2.692625976334888 1.2311356403872424 0.8158277176475099 0.3633466598628641 0.21452013083052887 0.26407133305294034 3.595953298383433 0.12476931188182484 0.0603993626942993 64.83157519638881 -1.811786573674303 -0.4153079227397325 LDSEDKDKEGKPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSEDKDKEGKPLLK 15 3 P13639 P13639 EEF2 Elongation factor 2 0 91.032 0.0025341 946860000.0 755190.0 678390.0 510030.0 624380.0 502860.0 849170.0 982540.0 770680.0 2190900.0 911540.0 False True 751124.1409494973 700969.801054585 581837.7907397685 703426.4439808755 566896.2403152671 790468.8766311662 935010.7865327046 828192.0550337448 1650982.0515559136 853364.7367913433 0.8801912108223838 0.8214187566388503 0.6818160695595206 0.8242975291265998 0.6643070845026952 0.9262966262272965 1.0956754435956082 0.9705018491246217 1.934673393892061 1.0 19.702802970366786 1.414308805654987 5.610605748240055 1.477552059532156 0.8481802530082528 0.5104029547734457 0.2399599462201241 0.14535669657959888 7.6617149834661955 0.15365057311798655 0.057067029155493665 25.960246126771455 -1.414308805654987 -0.6293718065239032 LDSHPCLEVTAAALR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDSHPCLEVTAAALR 15 0 Q9H4A4;A6NKB8;A0A087WU27;A0A087WUS4 Q9H4A4 RNPEP Aminopeptidase B 0 ;;; 228.03 6.5074e-13 5065920000.0 3762120.0 4304330.0 4213710.0 4269760.0 4065970.0 4237190.0 4355710.0 3700410.0 5194750.0 4329630.0 False True 3741865.163930829 4447597.022027569 4806963.741776107 4810311.178211649 4583747.178607694 3944283.0285723815 4145007.6668719486 3976553.3845012435 3914573.4685837235 4053309.306617269 0.9231629961774719 1.0972755064032744 1.1859355845181745 1.1867614372183561 1.1308653822999526 0.9731019101189995 1.0226230848223146 0.981063393807446 0.9657722054897092 1.0 21.950668840464267 2.738324174054193 24.99591432374028 0.9896819359546948 1.1134430718042487 0.4030180009194916 0.0703666236841848 22.082517469001253 2334396.1255508726 0.02329295473735925 0.023252982632948845 547.4244290122707 -2.738324174054193 0.12376113584955395 LDSLHPDLIYNVSWNHNGSLFCSACK ddPTM_BT-474_Trastuzumab_2h_R1 3 LDSLHPDLIYNVSWNHNGSLFCSACK 26 0 Q9BR76;A0A087WW53;F5H390 Q9BR76 CORO1B Coronin-1B;Coronin 0 ;; 311.34 5.361799999999997e-82 2858771000.0 1656506.0 2259741.0 2205223.0 2199978.0 2138197.0 2683903.0 2605306.0 2201039.0 2622190.0 2582705.0 False True 1647587.55575112 2334955.113142719 2515699.230258069 2478494.9892311706 2410483.7138634664 2498371.1028380855 2479277.3955445834 2365291.7068295744 1975986.4100458275 2417874.555735002 0.6814197832733614 0.9657056473853846 1.0404589536256275 1.0250717860247887 0.9969432484187383 1.0332922760248882 1.0253953786245606 0.9782524495405664 0.8172410786816663 1.0 21.20530796589066 4.734171176520379 4.335075802719347 0.9935399557848974 0.6596243879772604 0.6939698868159292 0.060988290495599 0.10943016553817547 4.9258589013041485 0.014661478574528168 0.11207159375441447 54221.45613480693 -4.734171176520379 -0.333915567807637 LDSPPPSPIT(ph)EASEAAEAAEAGNLAVSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 LDS(0.119)PPPS(0.119)PIT(0.626)EAS(0.136)EAAEAAEAGNLAVSSR 87.339 0.0068409 64463000.0 13142.0 10041.0 12902.0 11029.0 11088.0 20208.0 17967.0 12527.0 20512.0 18543.0 True False 13071.24493221347 10375.20861508733 14718.489453805647 12425.270269171147 12499.991076275064 18811.068524515264 17097.867569394723 13461.828350817084 15457.092446718196 17359.569864539004 0.7529705536606962 0.5976650744256704 0.8478602620144187 0.7157591095936472 0.7200634102005736 1.083613745692011 0.9849246094697963 0.7754701559925185 0.8904075715777345 1.0 14.08344358067375 2.776029382455457 24.395311718711852 0.9232950408603225 0.7257910224528819 0.5664140721244956 0.09513520083196567 367.8819088919646 239521.2261496638 0.030757958784629228 0.03262294816553621 597.0756807331485 -2.776029382455457 -0.1975040184074407 LDSQEPGRQT(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LDSQEPGRQTPDR 13 1 Q8TB03-2;Q8TB03 Q8TB03-2 CXorf38 Uncharacterized protein CXorf38 1 LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR 173.51 3.4855e-05 2104720000.0 2596610.0 2734590.0 2612430.0 2755500.0 2627500.0 2995660.0 2997380.0 2526650.0 3206990.0 3097440.0 True False 2582630.14027049 2825609.1750554373 2980237.436351379 3104346.017472221 2962096.5505873673 2788577.0752251237 2852385.2782964497 2715201.453068729 2416670.285964353 2899758.727348196 0.8906362160110759 0.9744290614272699 1.0277535879948123 1.0705532112704834 1.0214975896619436 0.9616583093363954 0.9836629687135837 0.9363542654294404 0.8334039184613049 1.0 21.467501435999257 1.664066144220501 3.2625100392312167 0.9086200961618844 0.994783873662248 0.2131327104500046 0.05841341597714898 0.27287219100891585 6.8086184470314 0.03593613110214751 0.01588272106949953 46.13878398214079 -1.664066144220501 0.08616377750036353 LDSQNAQGYEWIFIAWSPDHSHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSQNAQGYEWIFIAWSPDHSHVR 24 0 Q12792;Q12792-3;F8VS81;F8W1Q9 Q12792 TWF1 Twinfilin-1 0 161.66 1.0992e-11 203760000.0 46039.0 74701.0 65410.0 56693.0 52299.0 72462.0 74304.0 46616.0 89051.0 67319.0 False True 45791.13113941377 77187.37762729195 74619.15944608804 63870.32798713577 58958.967649540915 67452.87249720037 70709.6316511552 50094.72263125167 67105.57427226506 63022.64378530448 0.7265821994933712 1.2247562620546615 1.184005540933648 1.0134504703534661 0.9355203797922689 1.0702958245767678 1.121971840661549 0.7948686316922281 1.0647851350201947 1.0 15.943582655897046 1.760717036317 24.999999999802743 0.9332310198568332 1.0483761803971936 0.06099673436218178 0.1462253071090761 24.917210242914162 28137.560449596484 0.06571821541874512 0.03644496753619425 57.639079477694104 -1.760717036317 0.11514516054036039 LDSQPQET(ph)SPELPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 LDSQPQET(0.5)S(0.5)PELPR 267.26 6.372999999999998e-24 2200600000.0 955490.0 1007300.0 947160.0 859170.0 903550.0 991500.0 1020300.0 940970.0 993070.0 979640.0 True False 950345.7480049196 1040827.3715742904 1080511.8951376958 967940.8339073161 1018611.7367395688 922959.9387399487 970944.1910754951 1011189.9595488436 748341.2049562412 917118.5364880008 1.0362300075671338 1.1348885996351337 1.1781594768277075 1.0554151894191708 1.1106653024812085 1.0063692990813564 1.0586899647602952 1.1025728074596315 0.8159699920818602 1.0 19.806748686939123 1.2543796855283362 24.99982617698711 0.9079849937647739 1.0867613987630111 0.562091635770805 0.06261923537248743 139.72065650834793 220810.81819707187 0.04060914242587453 0.014722234909427409 17.96303373572059 -1.2543796855283362 0.17877640499823721 LDSQPQETS(ph)PELPR ddPTM_BT-474_Trastuzumab_2h_R1 9 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 LDSQPQET(0.312)S(0.688)PELPR;LDSQPQET(0.001)S(0.999)PELPR;LDSQPQET(0.023)S(0.977)PELPR;LDSQPQET(0.188)S(0.812)PELPR;LDSQPQET(0.095)S(0.905)PELPR;LDSQPQET(0.193)S(0.807)PELPR;LDSQPQET(0.071)S(0.929)PELPR;LDSQPQETS(1)PELPR;LDSQPQET(0.001)S(0.999)PELPR 279.19 3.4538000000000003e-33 34388990000.0 7511450.0 8193680.0 7701010.0 7731300.0 7503780.0 8531540.0 8635810.0 7718060.0 8630350.0 8467030.0 True False 7471009.187800542 8466401.685615847 8785245.269621119 8710081.787291955 8459341.904611401 7941774.720884945 8218062.878302142 8294020.8287145635 6503515.883265133 7926656.896410913 0.9425170390790243 1.0680923617936993 1.1083165809282047 1.0988342123443953 1.067201723899729 1.0019072131759452 1.03676278482839 1.0463453807960312 0.820461383437681 1.0 22.918281100334898 1.2696296246394352 22.506793295963764 0.910231092001049 1.0493422658145435 0.44687433837373536 0.06045159041462068 47.934109939666314 34724.32982363173 0.038865886970697296 0.014186993762343834 18.604997870096064 -1.2696296246394352 0.13911117381349447 LDSS(ph)PSVSSTLAAK ddPTM_BT-474_Trastuzumab_2h_R1 8 LDSSPSVSSTLAAK 14 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 LDS(0.298)S(0.701)PS(0.001)VSSTLAAK;LDS(0.181)S(0.793)PS(0.026)VSSTLAAK;LDS(0.002)S(0.997)PSVSSTLAAK;LDS(0.008)S(0.992)PSVSSTLAAK;LDS(0.001)S(0.997)PS(0.002)VSSTLAAK;LDS(0.185)S(0.815)PSVSSTLAAK;LDS(0.092)S(0.868)PS(0.04)VSSTLAAK;LDS(0.009)S(0.989)PS(0.002)VSSTLAAK 361.48 1.2623999999999993e-82 9894480000.0 10625630.0 9967250.0 9128320.0 8337300.0 8407270.0 10524380.0 10299220.0 10086900.0 13135500.0 10210680.0 True False 10568422.788698485 10299003.890920142 10413508.111220205 9392801.325157382 9477886.000706617 9796854.382325713 9801007.38175887 10839635.698240362 9898432.031682264 9559025.660597052 1.1055962358446463 1.077411470226859 1.0893901199727276 0.9826107449292809 0.99151172276638 1.0248800170825993 1.0253144755285346 1.133968678724451 1.035506377233013 1.0 23.18843214294216 3.8972233710682103 24.99992662798417 1.0372375469412782 1.0894884040637476 0.31849692728201584 0.0406468531759183 55.32392938171657 13439.555731397008 0.0121880140343448 0.021972257932232467 7892.659571053536 -3.8972233710682103 0.05225085712246935 LDSS(ph)PVSSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDSSPVSSPR 10 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 LDS(0.418)S(0.581)PVS(0.001)SPR 103.89 0.0040029 0.0 156150.0 170210.0 154800.0 162360.0 156490.0 194660.0 181700.0 185360.0 234520.0 175010.0 True False 155309.30574989595 175875.33695588238 176594.49445427948 182914.7593528542 176418.07391110066 181203.61238035143 172910.4768385941 199192.5044390083 176725.68840699823 163840.71196640073 0.9479286551302686 1.0734532024735683 1.0778425724278726 1.1164182403599725 1.0767657915651587 1.1059742734608682 1.0553572110578555 1.2157692801033315 1.078643313288579 1.0 17.32193436410223 5.738141365378738 1.0542310246802153 1.1062722480054261 5.876936510682516e-15 0.3717036982459947 0.052980525326881904 11.694741833138954 2.114299843706679 0.015366055462035191 23.785565255763018 547194.0487525247 -5.738141365378738 -1.1062722480054203 LDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 LDSS(0.003)EMDHS(0.996)ENEDYTMSSPLPGK;LDS(0.001)S(0.005)EMDHS(0.995)ENEDYTMSSPLPGK;LDS(0.002)S(0.001)EMDHS(0.997)ENEDYTMSSPLPGK;LDSSEMDHS(1)ENEDYTMSSPLPGK 305.64 1.3008999999999999e-62 2147620000.0 1859620.0 1665130.0 1595870.0 1443440.0 1488520.0 2149350.0 2049880.0 1826840.0 2561880.0 2194830.0 True False 1849608.0125432054 1720552.8454576596 1820554.6244492936 1626179.3560007624 1678074.1988507342 2000770.4935256762 1950719.4730979474 1963168.0773055558 1930539.001433227 2054754.0703115012 0.9001602864632868 0.8373522020554136 0.8860206925752906 0.7914228663648459 0.816678853735687 0.9737274754357143 0.9493688326419608 0.9554272726214573 0.9395474764240553 1.0 20.970534300080804 2.734327235905999 24.979681843674694 0.9592685926501532 0.8449833578280973 0.7600186759972043 0.032903578861060094 178.93579891542632 1055833.2529554162 0.010484245252694228 0.010209598778162614 542.4094357476389 -2.734327235905999 -0.11428523482205588 LDSSLPPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDSSLPPVR 9 0 Q9Y4R8;H3BRS3 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 0 ; 79.45100000000002 0.062592 205230000.0 130532.0 154369.0 135180.0 134894.0 131533.0 142909.0 141983.0 138156.0 154578.0 146688.0 False True 129829.23021546853 159507.07884696906 154212.16899437652 151971.56656900648 148282.94789282905 133030.03720160088 135114.7398622681 148465.9022619529 116484.3231390797 137326.2462540848 0.9454072601333244 1.1615192521307591 1.1229620935611166 1.1066461853754053 1.079785925397479 0.9687153099303758 0.98389596707009 1.081118186156907 0.848230591867757 1.0 17.067247859003427 2.8013930608146898 5.745476954699708 0.9903251413397399 1.0920214711340375 0.3249657016980614 0.07524874681058923 0.2790071291357628 18.711330996046172 0.022782839475249003 0.024073149832007874 632.9844785901678 -2.8013930608146898 0.10169632979429755 LDT(ph)PDINIVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDTPDINIVLK 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 LDT(1)PDINIVLK;LDT(1)PDINIVLK 222.74 8.3316e-11 197739000.0 589220.0 414100.0 364520.0 357400.0 363500.0 496190.0 494480.0 519460.0 907640.0 513580.0 True False 586047.704988496 427883.0681712643 415841.24753536144 402646.8033549526 409789.5703667013 461889.5532056221 470560.11330296134 558224.7429644326 683964.2837528917 480802.88470204105 1.218893903583121 0.8899344862217876 0.8648892524699866 0.8374467295562865 0.8523026450239634 0.9606630240828532 0.9786965267368825 1.1610261933232175 1.422546131720387 1.0 18.875086026336252 1.7150509993136658 3.000041417282758 1.2322698309010502 0.9271253505464181 0.40302913332295465 0.14025543388555703 0.19514203220065937 3.8457501813819275 0.0812021351895802 0.03704195310482586 51.88609653293406 -1.7150509993136658 -0.30514448035463215 LDTDDLDEIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LDTDDLDEIEK 11 0 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;I3L352;Q9UMR2-3;Q9NUU7-2 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 ;; 203.94 8.1175e-08 930170000.0 3106040.0 2455450.0 2186600.0 2114260.0 2125390.0 3165100.0 3110270.0 2758400.0 4592400.0 3148800.0 False True 3089317.425753485 2537178.1688991333 2494454.273732087 2381925.0992200356 2396045.8183265035 2946304.0868439814 2959814.3577147764 2964245.814871386 3460664.5550072487 2947840.888176689 1.0479932747198926 0.8606903374857656 0.846197053489874 0.8080236313885021 0.8128138217828018 0.9994786688322048 1.0040617760565407 1.0055650651839774 1.1739658571422265 1.0 21.491227225360486 2.585279077801971 4.382228686708003 1.0369132623437722 0.8694909727545896 0.516279271758243 0.07871904484023663 0.19549368808546314 6.2304741114056865 0.026817422426413263 0.0249439607249544 384.8390002959452 -2.585279077801971 -0.1674222895891826 LDTGS(ph)PEPETR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDTGSPEPETR 11 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 LDT(0.002)GS(0.998)PEPETR;LDTGS(1)PEPETR 238.01 1.4074000000000002e-15 680900000.0 882390.0 947960.0 831700.0 816580.0 812200.0 936870.0 900590.0 844160.0 945410.0 861050.0 True False 877639.3102827446 979512.27554608 948796.1307340075 919958.9442741659 915628.8557134384 872106.3820547616 857025.0211121056 907155.5057576231 712426.3733449614 806097.0518180075 1.0887514205682634 1.2151294603261054 1.1770246877769466 1.141250848392713 1.1358791768911716 1.0818875718350314 1.0631784586970503 1.1253676014714313 0.8837972694952939 1.0 19.620594020072726 1.7611850450554334 0.7480054198931338 0.9665689867742704 1.1592395077735596 0.578409410704811 0.05829412269722595 0.4605490853339647 0.5037526074264977 0.051980501251307515 0.024732302618268313 57.70122655547491 -1.7611850450554334 0.19267052099928916 LDTLIEWWR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDTLIEWWR 9 0 Q9H0V1;H7C268;Q9H0V1-2 Q9H0V1 TMEM168 Transmembrane protein 168 0 77.67699999999998 0.074269 64210000.0 54361.0 52388.0 63444.0 55734.0 63985.0 67726.0 58474.0 66085.0 57405.0 66091.0 False True 54068.326416074866 54131.70291078523 72376.36373486633 62789.91868546427 72133.11048119234 63044.261029855435 55645.38922762772 71016.59827283054 43258.30693759057 61873.015796648164 0.8738595609073884 0.8748838603357313 1.1697565215301364 1.0148191077646773 1.165825029739378 1.0189298229305113 0.8993482621004258 1.1477798093151572 0.6991465727121385 1.0 15.917022734639392 -0.2153736946714644 6.530048323065708 0.9999999953581071 1.0015481083550632 0.0 0.1453900358186266 0.0 6.993128499967451e-18 0.13361879119180925 0.0314942509066074 0.6090126384028318 0.2153736946714644 0.0015481129969561191 LDVFARPAS(ph)PSLQLLPWR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDVFARPASPSLQLLPWR 18 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 LDVFARPAS(0.962)PS(0.038)LQLLPWR;LDVFARPAS(0.861)PS(0.139)LQLLPWR 186.82 2.7901e-14 1332430000.0 553750.0 803800.0 655730.0 841090.0 655630.0 714640.0 720350.0 639520.0 879600.0 798300.0 True False 550768.671527409 830553.9970926396 748051.0842926657 947571.9077611002 739120.5942765353 665238.6188816098 685503.9184957691 687244.2298167595 662834.3660361407 747351.8105409838 0.7369603763035315 1.1113293436613587 1.000935668773152 1.267906084385055 0.9889861559865759 0.8901277945658084 0.917243938968389 0.9195725762934669 0.8869107650335876 1.0 19.511428015764622 2.9963347689163147 24.99854200185376 0.919773813611381 1.0450344617502956 0.1332520309327585 0.12622308242203983 265.87017199391215 1813376.9858234243 0.03591697592245801 0.04207889214403774 991.5960062056025 -2.9963347689163147 0.12526064813891458 LDVFYLHLYCTFQALCGLT(ph)S(ph)VFS(ph)LLVDIT(ph)LK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDVFYLHLYCTFQALCGLTSVFSLLVDITLK 31 0 A0A2R8Y5Y7 A0A2R8Y5Y7 4 LDVFYLHLYCT(0.007)FQALCGLT(0.997)S(0.997)VFS(0.999)LLVDIT(0.999)LK 51.22 0.024233 147810000.0 14134.0 78011.0 72375.0 141690.0 86312.0 24222.0 34918.0 18058.0 6628.5 14994.0 True False 14057.904114435029 80607.54897635462 82564.77090522266 159627.9394721972 97303.32158869514 22547.590152454886 33228.88294028635 19405.579656665996 4994.994992349434 14037.070082990766 1.0014842151047967 5.742476777545605 5.881909146073825 11.371884483616297 6.931882580439714 1.6062889206328486 2.367223554760976 1.3824522882578218 0.35584313270630835 1.0 13.776954217054383 2.7334777746036076 22.537809679515913 1.4523539457766272 6.432510345924949 0.504724359475964 2.3915407869123415 95.12786467924839 421803.6099983905 0.804646040510059 0.782098100141939 541.34954314188 -2.7334777746036076 4.980156400148322 LDVGNFSWGSECCTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LDVGNFSWGSECCTR 15 0 P62241 P62241 RPS8 40S ribosomal protein S8 0 ; 366.19 4.6065999999999984e-97 883280000.0 154665.0 161661.0 158907.0 128894.0 143528.0 162498.0 128127.0 126812.0 192621.0 159714.0 False True 153832.3008248971 167041.78865886174 181279.72435559533 145211.96718420056 161805.44004289384 151264.8957391468 121929.00751732825 136275.35537828837 145152.13553916273 149520.9157819651 1.0288346618289776 1.1171800800260345 1.2124037858351648 0.9711816331833605 1.0821592363629067 1.0116637859530289 0.8154645581165915 0.9114133274638866 0.9707814774946066 1.0 17.18998778484208 2.4614377418295117 5.591637461388459 0.9120081640903706 1.0823223164423097 0.5032458469650716 0.07347709601633258 0.1299512708230691 13.205116757404621 0.02563756565257253 0.021994675437908198 289.35949767891765 -2.4614377418295117 0.17031415235193914 LDWELEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDWELEQR 8 0 Q13769;F8WCP5;C9JXG5;H7C072 Q13769 THOC5 THO complex subunit 5 homolog 0 ;; 159.46 0.00083534 481348000.0 428155.0 501623.0 459330.0 482190.0 432183.0 473151.0 497155.0 436694.0 576310.0 482063.0 False True 425849.86105249217 518319.21831749287 523999.67143206886 543235.2045599459 487218.9433006666 440443.18504765077 473105.7133334685 469282.32376720075 434286.1226583543 451297.32662510173 0.9436126383399804 1.148509392230606 1.1610963338751659 1.2037190838739846 1.0795963427131163 0.9759490231005342 1.0483237666649934 1.0398517697337024 0.96230599437856 1.0 18.783718706840233 2.9928827104176765 24.307266243158075 1.0153475940441634 1.1227333460259856 0.3574614653388861 0.0686062176259321 259.6671664578308 886832.296887112 0.020324517188525026 0.02337302165107498 983.7453905082625 -2.9928827104176765 0.10738575198182221 LDWES(ph)FKEEEGIGEELAIHNR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDWESFKEEEGIGEELAIHNR 21 1 Q9UEE9 Q9UEE9 CFDP1 Craniofacial development protein 1 1 LDWES(1)FKEEEGIGEELAIHNR;LDWES(1)FKEEEGIGEELAIHNR;LDWES(1)FKEEEGIGEELAIHNR 280.08 3.5739e-45 126524000.0 229665.0 83317.0 80842.0 79041.0 70578.0 93084.0 65331.0 85776.0 152540.0 121180.0 True False 228428.5091581805 86090.15597881 92223.85090873929 89047.58249574374 79565.68995141971 86649.32217616682 62170.68994134394 92177.04068170248 114948.56093127889 113446.18865258242 2.0135406210756 0.7588633606938746 0.8129303593544741 0.7849323415213448 0.7013518117834849 0.7637922719600716 0.5480192034633745 0.8125177388196392 1.0132430388058018 1.0 16.791648615360828 4.7391427937416415 24.962238218841307 0.7795082249863101 2.013541005541063 0.8885931682589754 0.12878411487221966 13.42583093096266 575527.8707541912 0.029847383030137512 0.17763699437105654 54845.72651427215 -4.7391427937416415 1.234032780554753 LDWPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LDWPVR 6 0 Q96J01;D6REC9;Q96J01-2;H7C0C5 Q96J01 THOC3 THO complex subunit 3 0 107.65 0.07231 153570000.0 55156.0 58528.0 58163.0 55191.0 51700.0 68131.0 65118.0 58977.0 75134.0 58084.0 False True 54859.04622440772 60476.069099076834 66351.84483814127 62178.17494113928 58283.68855009205 63421.264333122934 61967.99356508296 63378.16321913785 56618.23244401933 54377.02939178574 1.008864346545102 1.112162061361381 1.2202182719485677 1.1434639890521858 1.071843923840688 1.1663245499524 1.1395987286948763 1.1655319153699821 1.041215989128162 1.0 15.73070971887093 1.0854970619756326 4.787278898741329 1.0013606127528965 1.132685980122477 0.39337885664761896 0.05442309065741408 0.18215221541779836 6.759784188410152 0.052121029274782654 0.01323687594052545 12.17578755834879 -1.0854970619756326 0.13132536736958045 LDY(ph)RIS(ph)YMLSIY(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 LDYRISYMLSIYK 13 1 Q14571 Q14571 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 3 LDY(0.544)RIS(0.975)Y(0.449)MLS(0.046)IY(0.986)K 41.293 0.086103 381590000.0 226010.0 209260.0 213800.0 175600.0 164960.0 242660.0 282570.0 236560.0 359130.0 257620.0 True False 224793.18727207187 216225.09259965885 243901.18161708646 197830.9419953262 185966.67820547725 225885.48536019726 268901.00957777415 254213.30842734055 270627.22359545145 241178.47104042137 0.9320615820406153 0.8965356305099872 1.0112891941180304 0.8202678337826009 0.7710749529310572 0.9365905853277384 1.114946157580983 1.0540464384349404 1.1221035709696263 1.0 17.879741604272397 2.3595890322259057 5.020374959969126 1.075325352539068 0.8869845747356789 0.629950522593456 0.0676267096363323 0.1384712457873855 5.52339127461769 0.024878100788883282 0.020581370879361488 228.87008569475037 -2.3595890322259057 -0.1883407778033891 LDYFLLSHSLLPALCDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LDYFLLSHSLLPALCDSK 18 0 P27695 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 266.28 3.9598e-31 4336900000.0 6439500.0 7077900.0 6658800.0 6640900.0 6096100.0 7237900.0 7826900.0 6914000.0 10138200.0 7420900.0 False True 6404830.447495712 7313483.6228191 7596301.1606728425 7481637.259093181 6872402.200584458 6737561.0091839405 7448282.945338424 7429957.78858062 7639776.454919965 6947291.808647875 0.9219175793829596 1.0527100090592705 1.0934190429739963 1.0769142084661194 0.9892203163295666 0.9698111429258139 1.0721131558151802 1.0694754147698144 1.099676919488267 1.0 22.728019265769564 LDYGQHVVAGTPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDYGQHVVAGTPGR 14 0 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ;; 151.56 6.9063e-06 2138210000.0 2017970.0 2364360.0 2097980.0 2139640.0 2078260.0 2232780.0 2223900.0 2052790.0 2420680.0 2118650.0 False True 2007105.473737543 2443056.2933141966 2393357.348030935 2410518.204617768 2342914.0921878954 2078433.1739987722 2116321.4608769934 2205979.613656406 1824135.849450165 1983435.9431324804 1.0119335997146854 1.2317293642747185 1.2066723688848038 1.2153244539930985 1.1812401102743373 1.0478952855499133 1.0669976351919106 1.112201087861934 0.9196847802250021 1.0 20.919570374411403 2.736742646208129 21.893133799866764 1.0456297197289637 1.177468125922806 0.4605336469061516 0.07448747938009974 27.66088856977017 333105.20669267065 0.023236546950166886 0.022992682419513393 545.4345522435685 -2.736742646208129 0.13183840619384224 LDYSKFQELVLPHFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LDYSKFQELVLPHFGK 16 1 P22736;F5GXF0;P22736-2 P22736 NR4A1 Nuclear receptor subfamily 4 group A member 1 0 65.092 0.037625 591240000.0 1058300.0 597540.0 383230.0 389270.0 358030.0 634790.0 552020.0 448070.0 1345300.0 669000.0 False True 1052602.2303881836 617428.7576794429 437185.45290512603 438551.542087248 403622.99828993116 590908.461434928 525316.6836788156 481507.25865335827 1013768.8410964294 626303.8472402848 1.6806574556843608 0.9858294187398837 0.6980405035535372 0.7002216959382582 0.644452369354645 0.9434852812076417 0.8387569164608294 0.7688077612408877 1.6186533829601266 1.0 19.256503215550072 -0.7840606574056075 8.850883067064066 0.999999710083007 0.9385804983685148 0.0 0.35431725193143004 0.0 0.0 0.334500207789402 0.0788424550787318 0.16441420717651717 0.7840606574056075 -0.06141921171449227 LDYVPSSAS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 6 LDYVPSSASR 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 LDYVPSS(0.01)AS(0.99)R;LDYVPSSAS(1)R;LDYVPSSAS(1)R;LDYVPSSAS(1)R;LDYVPSSAS(1)R;LDYVPSSAS(1)R 213.59 2.0353e-08 8162690000.0 6508690.0 5989970.0 5415040.0 5842770.0 5117330.0 5742450.0 5110490.0 5400590.0 7836240.0 5264710.0 True False 6473647.936223447 6189342.530436674 6177430.563628558 6582464.082927289 5768991.642708759 5345487.947773288 4863276.074732344 5803609.449440351 5905103.652236298 4928711.700454998 1.313456401928688 1.2557728888596384 1.253356036843925 1.3355344120289332 1.1704867302699384 1.0845608898730708 0.9867235842346767 1.1775104331837032 1.198102873757287 1.0 22.232779163949008 3.0411857746683464 4.228136231250506 1.0996937098068433 1.2838577613578799 0.6657037177951179 0.06651700470733637 0.1396059809907467 5.485042978883016 0.02054284876143265 0.024286661960806154 1099.4760529111704 -3.0411857746683464 0.18416405155103655 LDYWEDDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LDYWEDDLR 9 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;H0YAC6;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 A0A494C1L5;Q5T321 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin 0 ;; 190.93 8.489299999999999e-05 1310050000.0 1064440.0 1163070.0 1081410.0 1110410.0 1000040.0 1134000.0 1108150.0 1042520.0 1277550.0 1111520.0 False True 1058709.1733104016 1201782.0818593386 1233663.1282157782 1250987.7921470965 1127389.1662985308 1055609.249148866 1054544.5509559074 1120318.1362092958 962714.9207929417 1040581.841979851 1.0174203802134976 1.154913562178619 1.1855512737648422 1.2022002899521282 1.0834219095669753 1.0144413505625114 1.0134181747295248 1.076626643876214 0.925169825144405 1.0 19.988959007126986 2.9521532483652067 3.8881098563558862 1.0175721327534437 1.144694925561036 0.536201241502761 0.05823485085205142 0.18907240529043973 5.914482352533075 0.018347261849324732 0.020346255418210026 895.6807663374941 -2.9521532483652067 0.1271227928075922 LDYWEDDLRR ddPTM_BT-474_Trastuzumab_2h_R1 6 LDYWEDDLRR 10 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;H0YAC6;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 A0A494C1L5;Q5T321 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin 0 ;;;;; 154.84 2.2074e-05 1482074000.0 1117041.0 1241132.0 1164796.0 1210180.0 1150058.0 1257498.0 1226595.0 1119375.0 1440250.0 1317223.0 False True 1111026.9753709217 1282442.3283398624 1328789.1522116722 1363388.6639174498 1296511.0693721797 1170570.1230918884 1167259.913802067 1202908.4465710786 1085319.6858612457 1233156.700408652 0.9009617147623995 1.039967043859777 1.0775509323116266 1.1056086087564059 1.0513757650933842 0.9492468578437573 0.9465625199256935 0.9754708758201213 0.880114980927878 1.0 20.233924707700897 2.735278826040179 24.145668314352847 0.9507059205951865 1.0416399342561906 0.34782780500857513 0.05771925592402129 199.25458042803584 1466003.2466598745 0.018695063163473 0.01829730569379224 543.5992214269467 -2.735278826040179 0.09093401366100407 LEAAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LEAAEER 7 0 P16949;P16949-2;A2A2D0;E5RIR6;E7EVN3;Q9H169-3;Q9H169;Q9H169-4;Q9H169-2;E5RGX5;Q93045;Q93045-2;A0A0J9YW36;Q9NZ72-2;Q9NZ72;A0A0J9YXY4;H7BZ55 P16949;E5RGX5;A0A0J9YW36;H7BZ55 STMN1;STMN4;STMN2;STMN3 Stathmin;Stathmin-4;Stathmin-2;Stathmin-3;Putative ciliary rootlet coiled-coil protein-like 3 protein 0 ; 137.18 0.006765300000000001 1211970000.0 1628640.0 1799360.0 1664570.0 1642040.0 1584480.0 1773010.0 1933220.0 1565990.0 2097800.0 1920350.0 False True 1619871.5831989148 1859250.6098639097 1898926.987298189 1849922.0956378463 1786254.1360512555 1650445.9919166078 1839702.7629824274 1682852.1257360936 1580825.2990798275 1797791.6189056481 0.9010341166152299 1.0341858257163714 1.0562553342272805 1.0289969516956203 0.9935824137052014 0.9180407643246593 1.0233125706205546 0.9360662871264688 0.8793150899446887 1.0 20.777794377832976 2.947300639203868 7.180403208964885 0.9526595917885365 1.0109490913730135 0.18450578814582663 0.05393316166429908 0.4124875294167839 48.48245829523709 0.01639777618545898 0.017567430736796345 885.7285408909468 -2.947300639203868 0.058289499584476934 LEAAFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEAAFR 6 0 Q8NFJ8 Q8NFJ8 BHLHE22 Class E basic helix-loop-helix protein 22 0 ;; 118.42 0.050903 763320000.0 881013.0 1111183.0 1084907.0 1226963.0 1052106.0 1215256.0 1238415.0 850807.0 1570123.0 1171385.0 False True 876269.7238977465 1148168.0544306915 1237652.4754193074 1382296.3899966502 1186085.462779172 1131248.2131249167 1178508.13524528 914298.5386504055 1183187.2252202865 1096626.2064268452 0.7990596237462811 1.0470003796204963 1.1286001266119385 1.2604991399034762 1.0815767996679684 1.0315713836630631 1.0746671275395032 0.8337376339285919 1.0789339323519218 1.0 20.064640425027836 1.8131881375929593 24.999999902709938 0.9526003416738436 1.0699298531882124 0.09334595088126829 0.12149898443854341 234.2547513235586 78488.49709877638 0.051703683190610104 0.03323331770764644 65.04113893683497 -1.8131881375929593 0.11732951151436888 LEAAHTLEDCASR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEAAHTLEDCASR 13 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 0 ;; 207.66 5.2113e-08 1424580000.0 515905.0 636764.0 562595.0 586155.0 585657.0 598912.0 591532.0 561280.0 697979.0 614992.0 False True 513127.4248024344 657958.3048080334 641803.4858365975 660362.1629001737 660236.9474889997 557510.6231272009 562917.3372883172 603165.563722089 525971.4278894265 575742.6840388593 0.8912443684092063 1.1427992453024813 1.1147401497737128 1.1469744752424904 1.1467569902189803 0.9683329698889793 0.9777238215854142 1.047630444022071 0.9135529507725824 1.0 19.13506464824839 2.72861739770676 24.797025165923763 0.9892990187351555 1.0962255313363074 0.32040452408626985 0.07712727191168091 753.7587647526742 1879767.6360523447 0.024556728016559882 0.023414129281473437 535.3248422673204 -2.72861739770676 0.10692651260115194 LEAALGEAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEAALGEAKK 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 87.001 0.021124 536000000.0 393450.0 407430.0 399440.0 383420.0 400190.0 495070.0 575510.0 423850.0 742740.0 568540.0 False True 391331.7089164047 420991.06125336356 455677.68000528077 431960.93268706213 451151.8243880335 460846.97616942605 547670.3826383016 455479.83926668955 559701.6792060969 532255.2904484167 0.7352331032477176 0.790957025337757 0.8561261638590374 0.8115671942370771 0.8476229968666824 0.8658382254522444 1.0289618393025233 0.8557544611401701 1.0515662112715818 1.0 19.021758859115813 3.03549157957693 0.3537702614848053 1.0172301219582822 0.7117578524570877 0.6853150847050635 0.05660219630605306 1.2397781953887523 0.28006776460076277 0.06085098242453027 0.14508429899532774 1085.1545096494722 -3.03549157957693 -0.30547226950119455 LEADYDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEADYDKK 8 1 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 ; 85.256 0.027052 547240000.0 568000.0 508242.0 435679.0 411753.0 405062.0 561957.0 567370.0 567785.0 1199950.0 607470.0 False True 564941.951110733 525158.5277312228 497018.8162102452 463880.88758201385 456644.24470942764 523110.23529448814 539924.1455361212 610155.9998538111 904238.4010062157 568700.7445187677 0.9933905600717731 0.9234356254898345 0.8739549244494493 0.8156853882344536 0.8029605185339403 0.919833920275842 0.9493993998425356 1.072894673929296 1.5900074155369335 1.0 19.11731016744303 1.5316122282976683 3.6159370403409565 1.3061807792488904 0.8927989343239581 0.5382081597092256 0.1452173212129607 0.1277364443941937 3.6643879968487285 0.08864552016730279 0.03519250889806238 34.010438259305786 -1.5316122282976683 -0.41338184492493235 LEAEIATYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEAEIATYR 9 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;; 220.51 1.0552e-06 3209220000.0 2024850.0 2359260.0 2116640.0 2083440.0 1961470.0 2174260.0 2172830.0 1981070.0 2488540.0 2196480.0 False True 2013948.432581983 2437786.5428972156 2414644.513835312 2347203.290380085 2211251.57795646 2023958.5238575093 2067721.9118833372 2128907.5030696266 1875272.6617275763 2056298.7658988612 0.9794045816594332 1.1855215707585158 1.1742673554442409 1.1414699698825437 1.0753552035469247 0.9842725957056074 1.0055551976074268 1.0353104025421258 0.9119650766837115 1.0 20.97161846263343 2.930297482874003 3.148052779244395 0.9948962328176645 1.1281067963661484 0.5163828781000994 0.060570734671058106 0.20808972260954203 4.0381330582756165 0.019035058620924823 0.021086353459103174 851.7212501431462 -2.930297482874003 0.13321056354848393 LEAFHER ddPTM_BT-474_Trastuzumab_2h_R1 3 LEAFHER 7 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 ;; 142.36 0.0024944000000000003 603890000.0 454530.0 590700.0 552400.0 539300.0 485570.0 506550.0 514290.0 462580.0 689270.0 536140.0 False True 452082.8609830307 610361.0924143101 630173.1184531263 607575.3247043248 547404.4613011259 471533.3907904391 489411.8279214127 497100.06853364554 519408.64424480574 501923.0861874531 0.9007014688585003 1.2160450658895547 1.2555173009471328 1.210494877451032 1.0906142322704138 0.939453481552621 0.9750733556388601 0.9903909228594312 1.0348371265210587 1.0 18.937106779494524 2.9524992726715196 4.680748143434486 0.9875385778785535 1.1583569338372102 0.38939518995804034 0.09322884388799405 0.20389799705590014 9.882667738600968 0.028845421781994136 0.03164265922174653 896.3946847244981 -2.9524992726715196 0.1708183559586567 LEAGYQIAVETEQIGQEMLENLS(ph)HDREK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEAGYQIAVETEQIGQEMLENLSHDREK 28 1 Q96AJ9-1;Q96AJ9 Q96AJ9-1 VTI1A Vesicle transport through interaction with t-SNAREs homolog 1A 1 LEAGYQIAVET(0.001)EQIGQEMLENLS(0.999)HDREK 44.916 0.078276 88720000.0 74826.0 77512.0 73822.0 66687.0 67879.0 81707.0 97786.0 90383.0 93029.0 92393.0 True False 74423.1451299502 80091.94006300649 84215.49592767321 75129.56736242787 76522.98829964601 76058.7874075894 93055.717601204 97127.83841557449 70103.2494747341 86496.39963837306 0.8604189936355835 0.9259569230379238 0.9736300733876101 0.8685860645822485 0.8846956476752303 0.8793289399972536 1.0758334218563357 1.122911922596197 0.8104759246376038 1.0 16.400352462218276 2.2462114648850338 24.992483549601545 1.0266328833431495 0.901396289570603 0.2540569921082212 0.08274417135099618 196.4414287049635 641702.2598475165 0.029326756495469713 0.024107032617367404 176.28341894546864 -2.2462114648850338 -0.12523659377254648 LEAHSDWVR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEAHSDWVR 9 0 P55735;P55735-4;P55735-3;P55735-2;A8MXL6 P55735 SEC13 Protein SEC13 homolog 0 ;;; 179.51 4.9721e-05 1415840000.0 1119720.0 1387010.0 1410650.0 1123620.0 788470.0 970620.0 1142500.0 818880.0 1541040.0 1053190.0 False True 1113691.5519325861 1433175.789384749 1609257.258410398 1265870.176792645 888876.9808721681 903523.3239937149 1087232.9102261644 879988.9837883861 1161271.3408780515 985974.5125186767 1.1295338143048501 1.4535627150479726 1.632148942977788 1.283877180109832 0.9015212559618073 0.9163759433148633 1.1026987984190613 0.8925068271191412 1.177790425750031 1.0 19.91119082779642 3.384652183870384 4.8341917555292735 0.9912941352806272 1.4172105023122124 0.6321800709414502 0.14237266966176435 0.12293076055378442 4.9114037031221995 0.03946442954438115 0.054162349870706325 2424.667458734748 -3.384652183870384 0.4259163670315852 LEALESHPTDELER ddPTM_BT-474_Trastuzumab_2h_R1 1 LEALESHPTDELER 14 0 O15211;O15211-2 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 0 113.76 0.00051701 113080000.0 61870.0 85046.0 68929.0 83612.0 76651.0 80196.0 75018.0 69751.0 83625.0 84788.0 False True 61536.8987944032 87876.70469860738 78633.6040583917 94197.2706270686 86412.05050392852 74652.23928107812 71389.09274341032 74956.17380840138 63016.7392675902 79376.75724934108 0.7752508533587649 1.1070835814389086 0.9906376473831633 1.1867109956529567 1.0886316536273701 0.9404798314773412 0.8993702340240528 0.9443088431157044 0.7938941001285778 1.0 16.27642900517954 2.5846666555761155 5.049636976649509 0.9099557179979256 1.039996401245221 0.20856283970022038 0.11130871665770511 0.33403192921942343 12.870150297700523 0.035920613736292704 0.03355991045084674 384.2967003826763 -2.5846666555761155 0.13004068324729534 LEAMCFDGVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEAMCFDGVKR 11 1 P47813;X6RAC9 P47813 EIF1AX Eukaryotic translation initiation factor 1A, X-chromosomal 0 ; 140.78 6.163e-05 1575550000.0 935880.0 1180390.0 1086870.0 1106970.0 1084590.0 1240320.0 1306520.0 1220420.0 1819740.0 1479540.0 False True 930841.3260660432 1219678.5675891773 1239891.8487566058 1247112.28849981 1222706.1076314182 1154579.5977992264 1243318.6362089152 1311493.937567191 1371289.4602667207 1385114.490502077 0.6720320467722718 0.8805615535413738 0.895154774034 0.9003676570070076 0.8827473223446035 0.8335625724200704 0.8976287842878868 0.9468487598391957 0.9900188537986164 1.0 20.401573800510473 5.315544227882343 1.3872650094252805 0.9148653460098074 2.3752659420429933e-10 0.7041974468903205 0.04752771959497552 3.1522219666853 1.7553929827446546 0.013333352606501904 5.982860752833734 206796.9970078681 -5.315544227882343 -0.9148653457722808 LEAPLEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEAPLEELR 9 0 Q16401-2;Q16401;F2Z3J2 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ;;; 171.53 0.00013232 354564000.0 476627.0 590780.0 545540.0 540240.0 436421.0 532090.0 535030.0 470820.0 688890.0 541720.0 False True 474060.8931902377 610443.7551659482 622347.2900813154 608634.3286079447 491996.62748007145 495307.8707051329 509148.55488691805 505954.9791755171 519122.29015306634 507146.9658101742 0.9347603853508597 1.2036821598464185 1.2271537286772625 1.2001143053979295 0.970126335458007 0.9766554945544668 1.003946763387505 0.9976496228607956 1.0236131243016735 1.0 18.95204435997112 3.2334020116916005 24.99849358641679 0.9951215183615285 1.1519976940833034 0.45957016228476366 0.07727392474630318 106.93409808058274 518200.6187012632 0.022155773208594024 0.027254074374120345 1711.5989511923917 -3.2334020116916005 0.15687617572177492 LEAQHQALVTLWHQLHVDMK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEAQHQALVTLWHQLHVDMK 20 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 277.71 4.7368999999999994e-45 886612000.0 1045646.0 1038652.0 936463.0 925747.0 934161.0 1155974.0 1151724.0 475175.0 1504732.0 958521.0 False True 1040016.3581181912 1073222.903941607 1068308.8505176874 1042946.4752810204 1053120.8661439552 1076064.2382500984 1096010.7101070625 510634.97138975875 1133910.9609757785 897347.3691488843 1.158989699947107 1.1959949299896395 1.190518730255995 1.1622550097519468 1.1735933066175017 1.1991613005682775 1.2213895619336426 0.5690493881695843 1.2636254364363602 1.0 19.77530704457256 LEASYSDS(ph)PPGEEDLLVHVAEGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEASYSDSPPGEEDLLVHVAEGSK 24 0 Q7Z3C6;C9JS65;C9JFV2;F2Z3I6;C9JX27;C9IYZ9;C9JKV7;C9JDK4;C9JXG2;Q7Z3C6-3 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 LEAS(0.047)Y(0.001)S(0.161)DS(0.792)PPGEEDLLVHVAEGSK;LEAS(0.039)YS(0.267)DS(0.694)PPGEEDLLVHVAEGSK;LEAS(0.001)YS(0.042)DS(0.957)PPGEEDLLVHVAEGSK;LEAS(0.004)YS(0.156)DS(0.84)PPGEEDLLVHVAEGSK 180.88 2.2115e-17 247846000.0 278943.0 265952.0 255935.0 228863.0 249442.0 316293.0 294880.0 282325.0 393450.0 338380.0 True False 277441.2018814806 274804.0515486211 291968.4233731009 257837.03233414816 281206.96014143236 294428.40938363556 280615.5278490071 303393.5251173013 296489.5194598906 316784.2986983069 0.8758047763778369 0.8674800256130555 0.9216631776663915 0.8139198609073177 0.8876922287402981 0.9294286698976763 0.8858252413458613 0.9577290489584572 0.9359350216478239 1.0 18.273141304957072 1.5258403802642926 0.6041151345456783 0.997355469213565 0.8708119831804415 0.6310154929976526 0.030247124179586554 0.4424914646805197 0.37025315315190593 0.02847352014019125 0.014696855668085304 33.561424057728296 -1.5258403802642926 -0.1265434860331235 LEAVSHTSDMHR ddPTM_BT-474_Trastuzumab_2h_R1 6 LEAVSHTSDMHR 12 0 Q01518-2;Q01518;Q5T0R1;Q5T0R9;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R5;Q5T0R7;Q5T0R6;Q5T0S3;Q5T0R8 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 ;;;;; 212.9 8.604200000000001e-09 2768688000.0 846348.0 1698346.0 2165420.0 2162032.0 1796966.0 1883640.0 1999187.0 911214.0 1673269.0 1720040.0 False True 841791.3564061017 1754874.419938165 2470292.3138319524 2435745.0295218644 2025798.968648059 1753428.4004116144 1902478.687174016 979213.4157309367 1260914.2756058746 1610265.57459967 0.5227655423332145 1.089804345084162 1.5340899990649646 1.5126355974711923 1.25805270919469 1.0889063444379579 1.1814688938170919 0.6081067813763453 0.7830474025499502 1.0 20.61886721515541 1.7534340667564117 24.999999999999872 0.7676194298046989 1.194102426802579 0.2690829102025041 0.27814110431968064 6.096307056421662 10260.309163692835 0.13495890216663048 0.07484190192953152 56.680551433263325 -1.7534340667564117 0.42648299699788017 LECVEPNCR ddPTM_BT-474_Trastuzumab_2h_R1 3 LECVEPNCR 9 0 H0Y5B4;H7BZ11;J3KQN4;P83881;Q969Q0 H0Y5B4;Q969Q0 RPL36A;RPL36A-HNRNPH2;RPL36AL 60S ribosomal protein L36a;60S ribosomal protein L36a-like 0 ;; 151.97 0.00018979 1231320000.0 843000.0 866990.0 793180.0 859050.0 771300.0 917170.0 858360.0 763340.0 1057940.0 897960.0 False True 838461.3816661041 895847.2380434782 904852.8495558477 967805.6419196193 869520.4831467314 853768.1966859492 816837.8475463712 820304.3069619793 797224.8626697077 840651.424017767 0.9973948270482956 1.0656583840207052 1.0763710423890556 1.1512567685832706 1.0343412956954134 1.0156031052745889 0.9716724723339165 0.9757960119087865 0.9483417738823203 1.0 19.681148185633138 2.626313722977276 2.1297805465556885 0.9727048140434286 1.0725281624434286 0.567715267424716 0.037722838682006946 0.22977594808818505 2.0628959716327775 0.014608588307951326 0.013402337931123018 422.97404932597294 -2.626313722977276 0.09982334840000007 LEDAADVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEDAADVYR 9 0 A0A0B4J1W3;Q9BXJ9;Q9BXJ9-4 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 ; 133.98 0.00060913 431510000.0 624490.0 729810.0 667780.0 708940.0 663270.0 736020.0 738220.0 688930.0 885900.0 785050.0 False True 621127.815227362 754101.2846705387 761797.619552188 798691.7313107444 747733.5029907066 685140.6698047167 702509.4783257397 740341.4549156553 667581.8154518155 734947.436884881 0.8451322966170882 1.026061520626349 1.0365334734428262 1.0867331338633515 1.0173972524620538 0.9322308445740375 0.95586356665637 1.0073393249095979 0.9083395382415391 1.0 19.487281547165125 2.761094094340604 24.052660930568834 0.9646368571264998 1.0102722917860225 0.08679933490250202 0.06440322621618867 1195.9834648116123 1276612.0114003057 0.01992057540816324 0.021112882491525643 576.8914392827279 -2.761094094340604 0.04563543465952269 LEDAGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDAGVR 7 0 P13489;H0YCR7 P13489 RNH1 Ribonuclease inhibitor 0 94.407 0.052815 0.0 90131.0 113130.0 110950.0 117900.0 101310.0 117840.0 113180.0 104890.0 110540.0 111550.0 False True 89645.74471049542 116895.4636614708 126570.79560531209 132826.1279114405 114211.22798858458 109693.99816552234 107705.0510104132 112717.42442062787 83298.89816011264 104430.78349724025 0.8584226001987666 1.11935829404708 1.2120065690080446 1.2719058831436485 1.093654803342568 1.0503990728789387 1.0313534707250327 1.0793505578133158 0.7976469712334768 1.0 16.67218751826539 1.3414866942977397 6.760164240740997 0.9005766734192162 1.097284994886544 0.3104773138412785 0.11333266929955996 0.24281235785392083 13.37588751972403 0.07967052208331292 0.028755444216491958 21.95263690692583 -1.3414866942977397 0.19670832146732775 LEDDAKDNQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEDDAKDNQQK 11 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8Y5T0;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 171.05 1.3669e-05 304490000.0 576960.0 518562.0 406333.0 428024.0 494272.0 734430.0 787400.0 720280.0 1286330.0 816040.0 False True 573853.7114662821 535822.0226926513 463541.1544902501 482211.79451371054 557214.6094203305 683660.5827622595 749310.4538398966 774030.9511077309 969331.2074389147 763959.6285530058 0.7511571161858411 0.7013747882300227 0.6067613224120628 0.6312006243406529 0.7293770358987881 0.8948909827305425 0.9808246742817344 1.0131830559866113 1.26882517244386 1.0 19.54313687549196 2.38815510774047 1.2166082195607768 1.1018353697199506 0.6662232690581928 0.8448646783449009 0.07843091926156341 0.17140952529016246 0.5053124424751995 0.046641686075878465 0.03073416260898567 244.43033767676707 -2.38815510774047 -0.4356121006617577 LEDEFDMFALTR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEDEFDMFALTR 12 0 O60784;O60784-4;O60784-2;O60784-3 O60784 TOM1 Target of Myb protein 1 0 ;;; 106.4 0.004481000000000001 127827600.0 215270.0 227143.0 211924.0 199858.0 215080.0 234214.0 233867.0 201991.0 264064.0 237314.0 False True 214111.01023874545 234703.31744415694 241761.05712357032 225160.00230809776 242469.16312096335 218023.33746045214 222553.95975130188 217064.5941095152 198988.96547631614 222168.41734526295 0.9637328869566739 1.0564207111374162 1.0881882313085898 1.0134653925998207 1.091375479999715 0.9813426231579572 1.0017353609961572 0.977027233228132 0.8956672053304293 1.0 17.76129421745621 2.1481918092264882 1.3655692833519175 0.9540981859585475 1.0427623234070762 0.3810356772635024 0.04457109559135646 0.42686727974365934 1.5192033454011047 0.027724958748084297 0.014820550803698524 140.66686521062132 -2.1481918092264882 0.08866413744852875 LEDFFAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEDFFAR 7 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ;;; 195.98 0.0010591 490667000.0 559748.0 603249.0 560264.0 567143.0 552763.0 606020.0 620085.0 574983.0 685840.0 610235.0 False True 556734.3789618489 623327.7782932795 639144.3012980133 638943.245649518 623154.0915670116 564127.2638176332 590089.1195952652 617891.1511645131 516823.9217851598 571289.2798515318 0.9745227130929789 1.091089576291842 1.1187752402147575 1.118423307042569 1.0907855504114456 0.987463416019709 1.0329077411510665 1.0815731590921718 0.9046623838617686 1.0 19.1238619326798 2.7499356817395837 23.83207048012517 1.0151730339228051 1.0838376334320075 0.29999059988078447 0.05692237485350935 566.8328278196431 1187578.7410496762 0.017781334730256563 0.018704469877295658 562.2580495809038 -2.7499356817395837 0.06866459950920234 LEDFLDNER ddPTM_BT-474_Trastuzumab_2h_R1 4 LEDFLDNER 9 0 Q16512;Q16512-2;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 0 ;;; 177.7 0.00012055 323498000.0 656940.0 768410.0 669920.0 674880.0 664760.0 749520.0 712090.0 669770.0 799380.0 729820.0 False True 653403.1080328962 793986.0623363457 764238.9129509738 760319.7388029947 749413.2456587842 697707.4465802979 677643.4862520341 719751.6384231478 602383.5101432129 683242.2627696627 0.9563271238289515 1.162085698735556 1.1185474824888242 1.1128113412084357 1.0968484921012993 1.0211713832689413 0.9918055764072135 1.0534354761742737 0.8816543457094234 1.0 19.382037691787502 2.625580673011859 2.9149507391602225 0.9938538233860491 1.0969506724193723 0.380237583722115 0.06402296116132696 0.2948852873569257 4.839818379112317 0.021790362627320033 0.02033607575754794 422.26070942714136 -2.625580673011859 0.10309684903332317 LEDFRDYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEDFRDYR 8 1 O43707;O43707-2;K7EJH8;F6THM6;P12814-3;P12814;P12814-2;P12814-4;H9KV75;P35609-2;P35609;A0A494C1A0;Q08043;A0A087WSZ2 O43707;P12814-3 ACTN4;ACTN2;ACTN1;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 ;;; 105.78 0.003941 3209230000.0 4133070.0 6155310.0 5314180.0 6098570.0 5575650.0 5833990.0 5997540.0 4987970.0 6866100.0 5952250.0 False True 4110818.0103472504 6360185.772386525 6062370.352319403 6870648.336699525 6285675.978033288 5430700.00303527 5707416.077372279 5360197.649798444 5174041.656026319 5572372.309022389 0.7377141695452233 1.1413784685722748 1.0879334718004472 1.2329844374495686 1.1280071806860372 0.9745759439372467 1.0242345200322018 0.961923818535885 0.9285168630331606 1.0 22.409860221813986 2.7207253778783143 22.431909021267565 0.9782730064458642 1.0803527487098583 0.10668164116140866 0.12332532098369557 445.7140339796494 560584.7420539864 0.03987204655001605 0.03770158266726098 525.6847493528945 -2.7207253778783143 0.10207974226399408 LEDHEYKPLDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEDHEYKPLDPK 12 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ;;; 172.99 2.0591e-05 1403510000.0 4344780.0 3150990.0 2824740.0 2637030.0 2612840.0 4022060.0 3981460.0 3635190.0 6302850.0 3923560.0 False True 4321388.187230438 3255868.7973363176 3222438.838919773 2970877.72761922 2945569.686483992 3744024.4591108374 3788861.569145783 3906466.3369207922 4749597.071362995 3673155.0416712807 1.176478569024468 0.8863956899175434 0.8772945335445377 0.8088081482853701 0.8019181474963718 1.0192938813187997 1.0315005836023343 1.063517954620112 1.2930565188454268 1.0 21.808588361971356 2.109298860273029 1.5911501840866333 1.1288908509613227 0.905622095394969 0.3440884697796962 0.12175355812863485 0.4226142917772855 2.042241302144925 0.07409701529393273 0.039684537686489454 128.6171435908203 -2.109298860273029 -0.22326875556635373 LEDIDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDIDRK 7 1 Q92783;Q92783-2 Q92783 STAM Signal transducing adapter molecule 1 0 101.33 0.014656 230710000.0 750290.0 925150.0 826180.0 954700.0 979370.0 1065800.0 989990.0 885660.0 1070100.0 1088800.0 False True 746250.5220050551 955943.0584850148 942498.9627147071 1075564.922112403 1104086.96431922 992123.7546233349 942100.4015709393 951752.446490353 806388.1936053602 1019311.8518314231 0.7321120819543578 0.9378317899153709 0.9246424055810748 1.0551873012953872 1.083168965744369 0.9733270076677332 0.9242513955648057 0.9337205731301128 0.791110387028761 1.0 19.959164071525244 4.825637103339051 2.3696521552888563 0.9628436226066996 0.6417937590819366 0.44476146992368826 0.0760595035365861 0.8060238250123948 4.416606489308648 0.020157177895567736 0.5789444250638596 66932.50873419459 -4.825637103339051 -0.32104986352476306 LEDLASLVYLNESSVLHTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDLASLVYLNESSVLHTLR 20 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;H0YEV9 Q92614 MYO18A Unconventional myosin-XVIIIa 0 112.74 0.00014909 71422000.0 59745.0 78018.0 70610.0 76731.0 82401.0 80625.0 79634.0 75233.0 75053.0 85698.0 False True 59423.33955829354 80614.78196712302 80551.2742468778 86445.13673259324 92894.27892100836 75051.58352083547 75781.79918857793 80847.2684854333 56557.193808674914 80228.68027025102 0.7406745238501431 1.004812514621597 1.0040209308633785 1.0774842168835637 1.157868714879681 0.9354707477179426 0.9445724263855054 1.0077103127347797 0.7049498211632238 1.0 16.291830445245175 -0.9383651544551141 7.207696843767013 0.9999999976068652 0.9680134492687799 0.0 0.13219281000630115 1.8568639569650572e-09 1.2881116362670794e-10 0.12461202704074197 0.029371335570636 0.11524838428377113 0.9383651544551141 -0.03198654833808534 LEDLDTCMMT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 LEDLDTCMMTPK 12 0 Q5VZK9;Q5VZK9-2 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 LEDLDTCMMT(1)PK;LEDLDT(0.001)CMMT(0.999)PK;LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK;LEDLDT(0.013)CMMT(0.987)PK 199.31 1.9348e-06 845249000.0 1281024.0 718086.0 714669.0 619500.0 667899.0 1041762.0 916237.0 837366.0 1557190.0 851704.0 True False 1274127.109119147 741987.0584178463 815288.1831856936 697928.6364812334 752951.978702474 969747.4449839701 871915.11594476 899854.5029783917 1173441.3897769642 797347.5215395192 1.597957069784404 0.9305692165258345 1.0225004294382636 0.8753129816390126 0.9443209621429233 1.2162167922859797 1.0935195663006083 1.1285599800209474 1.4716812407108042 1.0 19.604849130052813 1.440112270888539 10.685590505084209 1.2573562089890609 1.082650204941563 0.05365568999283321 0.22012639734144576 0.7638701667811493 205.5544479137551 0.12357273757981134 0.052557007550592345 27.549408000577735 -1.440112270888539 -0.17470600404749792 LEDLLQDAQDEKEQLNEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDLLQDAQDEKEQLNEYK 19 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 244.74 1.4211e-24 480850000.0 434140.0 282150.0 271910.0 235290.0 237570.0 355700.0 389260.0 365360.0 543350.0 379300.0 False True 431802.63847748796 291541.19218672306 310192.56451591203 265077.689875173 267823.13131228945 331111.2962277353 370430.00668239547 392625.01846048824 409448.6730169812 355092.74926493224 1.2160277543581242 0.8210282884971165 0.8735536424160537 0.7465026825354869 0.7542343003812462 0.9324642559251343 1.0431922573727919 1.1056970869533398 1.1530752848785837 1.0 18.437836376315484 2.249321893291506 2.9280568691870235 1.0926178370721402 0.8691746551336798 0.33642605755865485 0.12824002707684629 0.27350344067807353 4.84454800032572 0.05255797236943 0.03866847268571502 177.55049739797872 -2.249321893291506 -0.22344318193846047 LEDLLR ddPTM_BT-474_Trastuzumab_2h_R1 8 LEDLLR 6 0 P12956;B1AHC9;P12956-2;A0A494C174;A0A494C0S6;P51449-2;P51449 P12956 XRCC6;RORC X-ray repair cross-complementing protein 6;Nuclear receptor ROR-gamma 0 ;;;;;;; 196.32 0.00056999 2250421000.0 2955589.0 3593220.0 3192136.0 2964049.0 2782586.0 3197239.0 3171600.0 2856743.0 3691170.0 3154584.0 False True 2939676.4372208086 3712818.1555526378 3641561.0022565015 3339297.299489209 3136931.8334206245 2976221.39342105 3018177.5913114203 3069927.66890702 2781530.6126439567 2953255.7483447604 0.9954019183297746 1.2571949305892647 1.233066592453946 1.130717277486319 1.0621944391977602 1.0077763820790535 1.021983142842623 1.0395062028162145 0.9418522639642529 1.0 21.493874866836407 3.175917314347312 2.337820920365215 1.0098465569937685 1.1721863624799465 0.5121025342094223 0.0696270173045443 0.22931835290250868 2.565344895024042 0.021328115900287863 0.02775204581122463 1499.3993365588942 -3.175917314347312 0.162339805486178 LEDLSEDWRQK ddPTM_BT-474_Trastuzumab_2h_R1 3 LEDLSEDWRQK 11 1 Q86W28-2;Q86W28 Q86W28-2 NLRP8 NACHT, LRR and PYD domains-containing protein 8 0 ;; 100.48 0.0036483000000000006 2440480000.0 1706910.0 3796180.0 3355080.0 3833770.0 3769800.0 2866480.0 2783020.0 2260520.0 1504400.0 3092870.0 False True 1697720.1862155276 3922533.556460735 3827446.1011218587 4319124.888914707 4249861.684644819 2668326.9845681135 2648394.690431175 2429211.481087975 1133660.7779272057 2895480.3886607736 0.5863345484445717 1.3547090741218928 1.321869115781558 1.4916781705133226 1.46775702618745 0.9215489750915827 0.9146650416983547 0.8389666497487629 0.3915277003314638 1.0 21.46537129468658 2.5463677418216304 4.0969760468948175 0.7948564940364474 1.2677461334647848 0.37475192712904415 0.2809397181472236 0.24215742387074485 7.859784697622125 0.09608276170466334 0.08788821995619023 351.85825280427446 -2.5463677418216304 0.4728896394283374 LEDLVCDVVDR ddPTM_BT-474_Trastuzumab_2h_R1 7 LEDLVCDVVDR 11 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;;;;; 211.78 1.9033e-08 1332346000.0 880459.0 1080469.0 904717.0 914650.0 876641.0 936063.0 929117.0 898026.0 1102232.0 972230.0 False True 875718.7065721916 1116431.757507698 1032093.2896588651 1030444.5962188224 988276.0350917078 871355.1680652864 884172.0611383818 965041.2602036298 830601.6927521011 910181.449032019 0.9621364042340363 1.2266035071303933 1.1339423482608877 1.1321309584091213 1.0858011181646723 0.9573422628993103 0.9714239529697092 1.0602734885774199 0.9125671520062827 1.0 19.79579465658751 2.8945299093845613 4.210296211346506 0.9900167601931742 1.1220651351566266 0.45094433018436453 0.07025732783191227 0.2114128431308033 6.402190574784417 0.021117833803510885 0.022748047140489183 784.386136834659 -2.8945299093845613 0.13204837496345245 LEDNDSAAS(ph)DPDAETTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDNDSAASDPDAETTAR 18 0 Q9BYV8-5;Q9BYV8-2;Q9BYV8;F8WF85;C9J6R3;C9J9X8;C9JCX6;C9JXA0 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 1 LEDNDS(0.001)AAS(0.999)DPDAETTAR 196.86 2e-15 283690000.0 496230.0 429690.0 359980.0 385240.0 388220.0 537950.0 448980.0 415910.0 609420.0 468490.0 True False 493558.35281633586 443991.9718969098 410662.05499774916 434011.3445004526 437657.51583978225 500762.78269808844 427261.12212984095 446947.31614818657 459236.60680962325 438590.56710553216 1.1253282442291503 1.0123153692680262 0.9363221322973347 0.989559231436964 0.9978726143794939 1.1417545662298674 0.9741685165495929 1.0190536451748258 1.0470736063484998 1.0 18.74251525832152 4.73867070170615 20.637976102844988 1.0126104054700493 1.1253286018072832 0.3025642838046769 0.05110067514995541 1.0172718641967904 187191.92598942487 0.012320240109151864 0.07119556921066657 54786.13984209105 -4.73867070170615 0.1127181963372339 LEDQLSEGRNS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEDQLSEGRNSPEK 14 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 LEDQLSEGRNS(1)PEK;LEDQLSEGRNS(1)PEK 176.69 2.2964e-07 449450000.0 931350.0 662280.0 607830.0 526560.0 552400.0 839220.0 808700.0 805530.0 1068100.0 833730.0 True False 926335.7150827138 684323.5894432855 693407.1806469293 593222.4420105867 622744.8656686817 781206.6967113869 769580.0914659934 865642.7389984595 804881.0668067321 780520.6376078348 1.1868177091662533 0.8767527166746325 0.8883905783351307 0.760034281513317 0.7978582956849041 1.0008789762505894 0.9859830149073672 1.1090581046665335 1.0312104869815588 1.0 19.574077253188175 2.5358005532574164 5.053457434619016 1.0409608541053987 0.8915985280941657 0.23476739430740212 0.11095494674724554 0.28656691655854755 15.213246751967848 0.03817933769683872 0.03518526074112118 343.40020750748147 -2.5358005532574164 -0.149362326011233 LEDQLSEGRNS(ph)PEKAENKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDQLSEGRNSPEKAENKR 19 3 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 LEDQLSEGRNS(1)PEKAENKR 142.32 1.1158e-07 253020000.0 320220.0 230780.0 203090.0 183170.0 194530.0 294640.0 290670.0 268580.0 466210.0 271270.0 True False 318495.9710997868 238461.37279054415 231683.3067100753 206359.30321915692 219302.24243035627 274272.2303079562 276609.1816327693 288622.8034216057 351318.7923939399 253957.3163540685 1.2541318977230733 0.9389820943692765 0.9122923097323227 0.8125747514651234 0.8635397695123067 1.079993418758468 1.089195560907249 1.136501234007397 1.3833773227628914 1.0 17.954226512146928 2.2449314740321817 1.7854150092907368 1.179843394833471 0.9484633834758562 0.2922486548462382 0.14266293062258717 0.4258760799299814 2.7189476476460643 0.07373705867770565 0.04678751700290076 175.76462585725588 -2.2449314740321817 -0.23138001135761477 LEDTENWLYEDGEDQPK ddPTM_BT-474_Trastuzumab_2h_R1 5 LEDTENWLYEDGEDQPK 17 0 P34932;A0A087WYC1 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;;; 288.71 5.4298999999999985e-37 290159000.0 302475.0 278231.0 263351.0 251455.0 255999.0 336273.0 319176.0 309707.0 441073.0 329323.0 False True 300846.5082081315 287491.7506408087 300428.5317120735 283289.1772177381 288598.95522504894 313027.23901149636 303736.2375092741 332818.9090002805 332376.4692253962 308305.3241923944 0.9758070477576043 0.9324903856068435 0.9744513251564689 0.918859179483241 0.9360816456252701 1.0153157096182852 0.9851799942310792 1.0795107410879115 1.0780756709150456 1.0 18.234000278314724 2.247735950675662 1.5191924121196392 1.0567045630632446 0.9478948362186399 0.6352721074404075 0.03209949775401036 0.22317688405133707 1.016865074561319 0.017404471815400162 0.010522473553647127 176.9033066186091 -2.247735950675662 -0.10880972684460466 LEDTHFVQCPSVPSHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEDTHFVQCPSVPSHK 16 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3;Q9H1B7 Q7Z5L9;Q9H1B7 IRF2BP2;IRF2BPL Interferon regulatory factor 2-binding protein 2;Interferon regulatory factor 2-binding protein-like 0 ; 211.17 4.5052e-12 1642730000.0 1104370.0 1341910.0 1185620.0 1158680.0 1165800.0 1466310.0 1299480.0 1139890.0 1745870.0 1474810.0 False True 1098424.194627042 1386574.6631482742 1352544.9904062203 1305368.7691978621 1314257.7197620359 1364947.441022464 1236619.1879043267 1224954.380044136 1315623.731959433 1380686.3631516348 0.7955638760128804 1.004264762913424 0.9796178382748871 0.945449165021194 0.9518872314795918 0.9886006535957637 0.895655393511346 0.8872068362057144 0.9528766033122207 1.0 20.396954203391644 4.752090037228421 24.640608564091046 0.9483450144899623 0.7955637528550841 0.6025557522217198 0.03866433264704524 1490.6300633843339 2714768.6213078466 0.010225359706237067 0.19820119516981297 56505.41087723016 -4.752090037228421 -0.15278126163487826 LEDTYFDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LEDTYFDR 8 0 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ;;;; 151.56 0.0010960999999999998 2386080000.0 2343590.0 2735820.0 2360480.0 2475070.0 2540390.0 2859160.0 2656610.0 2574860.0 2555040.0 2675570.0 False True 2330972.3718373287 2826880.1148618846 2692815.0663400367 2788413.6082253563 2863893.608428787 2661512.998938688 2528099.62506427 2767009.128074149 1925384.6277819234 2504812.831929279 0.9305974251345345 1.1285793807933107 1.0750564002284966 1.1132223424764396 1.1433563306296757 1.0625596312075398 1.0092968196418313 1.104677001332239 0.7686740515054519 1.0 21.256271373728357 1.2554270334404931 24.99999989517698 0.8843369840663845 1.0748678603966082 0.4728540102792679 0.07871225764002895 158.40219708690216 234791.13108640938 0.048781324374891695 0.017710105797326514 18.00640580319345 -1.2554270334404931 0.1905308763302237 LEDTYFDRDVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEDTYFDRDVEK 12 1 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ;;; 188.96 7.7781e-06 2654080000.0 3201730.0 3117980.0 3340380.0 2890050.0 2842850.0 3591310.0 4496370.0 3398210.0 5287860.0 4737000.0 False True 3184492.241425646 3221760.079441285 3810676.4688965464 3255930.0336765014 3204870.096607914 3343051.1927344063 4278863.405298573 3651801.685960736 3984737.7566937986 4434680.604450263 0.7180882966475566 0.7264920220428512 0.8592899486543586 0.7341971889495561 0.7226834089002447 0.753842608051549 0.964863941047902 0.8234644186767595 0.8985399653573832 1.0 22.080398771490003 1.5511116800628473 0.4944673481144077 0.9975767648550343 0.7387506786845068 0.620502164316721 0.06204803216666683 0.5882477537748302 0.3646536400847464 0.06641046207195392 0.04196563667260285 35.572278193488515 -1.5511116800628473 -0.2588260861705275 LEDVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEDVLR 6 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 ; 127.1 0.087135 161740000.0 292810.0 361900.0 326560.0 321850.0 332000.0 335550.0 348450.0 322940.0 402030.0 366930.0 False True 291233.54349424894 373945.6227268306 372536.809489596 362596.17699997645 374278.23208182916 312354.2182997373 331594.1422917345 347039.4226560922 302955.0934260004 343512.21325542184 0.8478113215663148 1.088594839708886 1.084493636948485 1.0555554155227795 1.0895631003475588 0.9092958161213421 0.9653052482450587 1.0102680756740596 0.8819339800321312 1.0 18.390001868064743 2.7390695524235347 24.998205224649126 0.959668746383719 1.040372156676557 0.21417942489252095 0.0753663656210807 73.94635839318212 3632205.425250266 0.023285261477587294 0.023348994906352248 548.3647787131471 -2.7390695524235347 0.0807034102928379 LEDVSKPPAYAYPATPSS(ph)HPTSPPPAS(ph)PPPTPGITR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDVSKPPAYAYPATPSSHPTSPPPASPPPTPGITR 36 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 2 LEDVSKPPAY(0.001)AY(0.003)PAT(0.193)PS(0.212)S(0.221)HPT(0.238)S(0.228)PPPAS(0.89)PPPT(0.008)PGIT(0.006)R 56.18600000000001 0.05578 230530000.0 91794.0 85383.0 82914.0 61974.0 86577.0 106080.0 77305.0 92184.0 118800.0 91562.0 True False 91299.79130327205 88224.92153988652 94587.5704985925 69819.90204566256 97602.06776791713 98746.93928546007 73565.46181622193 99063.23818086708 89523.33183844191 85718.43476982796 1.0651126744023174 1.0292409302245078 1.1034682417216324 0.8145260962025694 1.138635674228061 1.1519918620844676 0.858222178388589 1.1556818372485769 1.0443883171552408 1.0 16.387317885998534 LEDVSKPPAYAYPATPSSHPTS(ph)PPPAS(ph)PPPTPGITR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEDVSKPPAYAYPATPSSHPTSPPPASPPPTPGITR 36 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 2 LEDVSKPPAYAYPATPSSHPT(0.07)S(0.93)PPPAS(1)PPPTPGITR;LEDVSKPPAYAYPATPSS(0.001)HPT(0.194)S(0.805)PPPAS(1)PPPTPGITR 165.25 1.7284e-17 1509860000.0 422830.0 558600.0 561850.0 506160.0 514410.0 677940.0 674170.0 655480.0 725200.0 627740.0 True False 420553.5302608293 577192.6633191691 640953.5963122536 570239.8041022454 579917.0643530528 631075.6034991028 641557.8215205013 704395.2460599967 546484.1771821392 587677.0957647478 0.7156200799582982 0.9821595353619571 1.0906560778554366 0.970328447734021 0.9867954162794164 1.0738475398260676 1.091684236367317 1.1986093232770332 0.9299055231529757 1.0 19.164664145997204 4.723626337521176 2.7344215981061173 1.0563675540864117 0.6564418604990083 0.6319310412901431 0.07393743437263278 0.2731666137539463 2.829560617928627 0.01957735522018078 0.24267748377213003 52920.79229355283 -4.723626337521176 -0.3999256935874034 LEDYQANR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEDYQANR 8 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 104.06 0.016318 0.0 45475.0 76057.0 60237.0 56724.0 59144.0 55477.0 48370.0 58372.0 64315.0 59815.0 False True 45230.16765274747 78588.51126757263 68717.84601061002 63905.252583957255 66675.63782604737 51642.005568811 46030.158308656006 62728.01504701005 48465.43002684677 55997.55548980208 0.8077168236564274 1.4034275350088214 1.2271579609064271 1.1412150409957678 1.1906883656410665 0.9222189275425732 0.8220029947028443 1.1201920244256676 0.8654918880463093 1.0 15.773076228867629 2.7410311598636636 24.93874995009037 0.9568445548333077 1.1712454356212951 0.3008075712136725 0.1570792560465492 258.24365788883125 2606833.9858566555 0.04725450916169814 0.04805392469962706 550.8472173046218 -2.7410311598636636 0.21440088078798747 LEEAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEEAEK 6 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;H0YL80;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;H0YKP3;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;P67936-2;A0A2R8YHD2;Q8ND24;E9PN76;Q8ND24-2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2;Q8ND24 TPM3;TPM1;TPM4;RNF214 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;RING finger protein 214 0 ;;; 138.62 0.028444 1538770000.0 2020220.0 1757710.0 1531570.0 1454720.0 1467330.0 1651650.0 2144520.0 1917650.0 2797520.0 2121430.0 False True 2009343.359987541 1816214.314791866 1747201.743354916 1638887.4028441962 1654185.7779537058 1537475.3230658944 2040781.37473804 2060754.7806293906 2108108.68084746 1986038.521152402 1.0117343337437466 0.9144909806371756 0.8797421221926247 0.8252042371732191 0.8329071970839024 0.7741417433201506 1.0275638427969027 1.037620750393922 1.0614641450278752 1.0 20.921462174937982 2.169582598416711 9.875018418871457 1.0353594475864973 0.8713081376373746 0.6218731173272232 0.060565987782652354 0.25914236763345316 35.13305892762884 0.024223924435072246 0.01789454281384123 147.7687496077735 -2.169582598416711 -0.16405130994912276 LEEALR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEEALR 6 0 A0A1B0GUG6;A0A1B0GTG4;Q86WH2;Q8WWW0-2;Q8WWW0;Q155Q3-2;Q155Q3 A0A1B0GUG6 RASSF3;RASSF5;DIXDC1 Ras association domain-containing protein 3;Ras association domain-containing protein 5;Dixin 0 ;; 127.66 0.039465 621641000.0 1123950.0 1357460.0 1162190.0 1152390.0 906880.0 929740.0 1003960.0 894640.0 1099870.0 1040530.0 False True 1117898.778082584 1402642.2354981017 1325816.250063432 1298282.4558427918 1022365.792501112 865469.2621725457 955394.6193003589 961402.5796898709 828821.7760029214 974122.4845574471 1.1475957036249458 1.4399033568507917 1.361036492927029 1.332771264829816 1.0495248890241788 0.8884604101564665 0.9807746299320906 0.9869421914910885 0.8508393853360882 1.0 19.893743660249225 3.1498170993055408 3.531004084931442 0.9489565217885249 1.3344006670194635 0.8291337430250874 0.08124946822876988 0.0857462236789186 2.096813981463977 0.023345041666405608 0.02898906482246524 1411.9427875763993 -3.1498170993055408 0.3854441452309386 LEEALSEAAPDPSLPPLAQS(ph)PPKHER ddPTM_BT-474_Trastuzumab_2h_R1 2 LEEALSEAAPDPSLPPLAQSPPKHER 26 1 A0A1B0GW72;Q96PX9 A0A1B0GW72 PLEKHG4B Pleckstrin homology domain-containing family G member 4B 1 LEEALSEAAPDPS(0.001)LPPLAQS(0.999)PPKHER;LEEALSEAAPDPS(0.001)LPPLAQS(0.999)PPKHER 131.94 3.5919e-05 578360000.0 448570.0 358900.0 324170.0 288300.0 274440.0 438050.0 405140.0 365480.0 529510.0 425410.0 True False 446154.948960812 370845.76954036875 369810.31826384884 324798.750439935 309388.3072666782 407768.6345587837 385541.8304149036 392753.9734698358 399019.35557048325 398259.96958817565 1.1202605911464378 0.9311650626696055 0.9285651245498124 0.8155445569279688 0.7768501252752166 1.023875522765797 0.9680657355886825 0.9861748693346375 1.001906759504584 1.0 18.60335095143007 LEECVR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEECVR 6 0 P24534 P24534 EEF1B2 Elongation factor 1-beta 0 ;;; 140.01 0.02753 2893390000.0 1988610.0 2445900.0 2221810.0 2226450.0 2232420.0 2263810.0 2215880.0 2092890.0 2626390.0 2335450.0 False True 1977903.5447153405 2527310.30292223 2534621.535681283 2508318.341716937 2516705.4544099886 2107318.1431355323 2108689.418916367 2249072.079280081 1979151.3763229419 2186399.581520662 0.9046395551080784 1.1559233382053893 1.1592672982119898 1.1472369291126452 1.1510729674854747 0.9638302901932829 0.9644574746258198 1.028664704425085 0.9052102795164381 1.0 21.060125658164505 2.731916915435826 24.487809001026715 0.9780464498328914 1.1120471027468626 0.42019122804394726 0.07659643723411506 388.5646578953528 1432195.044625493 0.02430612618565632 0.023413791868064703 539.4074189991716 -2.731916915435826 0.13400065291397123 LEEDAFAREQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEDAFAREQR 11 1 D6REZ4;A0A1B0GWD8;Q9C093-2;Q9C093;Q9C093-3 D6REZ4 SPEF2 Sperm flagellar protein 2 0 56.359 0.071797 98767000.0 61534.0 90685.0 80314.0 110740.0 102870.0 74071.0 80286.0 59903.0 63680.0 85427.0 False True 61202.70778107008 93703.39540475977 91621.51309819765 124759.67264557189 115969.88474174024 68950.64611437892 76402.25945769614 64373.26604127057 47986.91726828269 79974.97572226566 0.7652732273856854 1.171658941544036 1.1456272699147505 1.5599838764419633 1.450077148437987 0.8621527608064345 0.9553270728461772 0.8049176065376229 0.600024155492463 1.0 16.287261028936385 2.6534210482132385 7.8969908703283265 0.8377590473727816 1.2304202461853753 0.4199925478611142 0.21954611022787082 0.31075122778961894 25.97997670422543 0.07503567961424064 0.07069570264467481 450.2161276142934 -2.6534210482132385 0.39266119881259365 LEEDINSSMTNSTAASRPPVTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEEDINSSMTNSTAASRPPVTLR 23 1 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 ;; 210.38 6.1379e-25 608010000.0 201361.0 204114.0 186714.0 190292.0 196937.0 243043.0 201106.0 205581.0 243488.0 233654.0 False True 200276.89474931007 210907.81110048137 213001.7082528187 214382.94768892182 222015.7596129492 226242.00947168277 191377.7344804749 220922.4981391656 183483.64497204154 218742.00167874643 0.9155849960788282 0.964185247834704 0.9737576991072883 0.9800721674101415 1.0149662977803904 1.0342870035721405 0.8749016330276623 1.0099683482992972 0.8388130471692091 1.0 17.73887074007037 -0.28460171338842954 11.339963875682049 0.9999999999970749 0.9617819738292716 0.0389816117460946 0.059745221176952204 0.0 0.0 0.053983757060433145 0.012724093563786483 0.5192760428772327 0.28460171338842954 -0.03821802616780334 LEEDRHS(ph)IDITSELWNDELQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEDRHSIDITSELWNDELQSR 22 1 H0YHD0;Q5PSV4-2;Q5PSV4 H0YHD0 BRMS1L Breast cancer metastasis-suppressor 1-like protein 1 LEEDRHS(0.333)IDIT(0.333)S(0.333)ELWNDELQSR 52.853 0.068719 19835000.0 8767.3 9572.4 6439.7 7996.3 8499.8 8401.1 9226.9 8399.3 8743.9 9717.2 True False 8720.097830938601 9891.01154736201 7346.353785124182 9008.630760120896 9582.199147738342 7820.351731062209 8780.559596819072 9026.098416781195 6589.083007257179 9097.03997668653 0.9585643080920894 1.0872780127063564 0.8075543038121273 0.9902815402820911 1.0533315421604341 0.8596589386332084 0.9652106200831787 0.9922016875723157 0.7243106575483205 1.0 13.151181477705316 LEEDRQS(ph)LDLSSEWWDDKLHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEDRQSLDLSSEWWDDKLHAR 22 2 E9PJF5;G5E9I4;Q9HCU9;H0YCF7 E9PJF5 BRMS1 Breast cancer metastasis-suppressor 1 1 LEEDRQS(1)LDLSSEWWDDKLHAR 126.25 9.4891e-06 51778000.0 25032.0 25444.0 25066.0 22223.0 22450.0 32294.0 28717.0 27566.0 42896.0 27315.0 True False 24897.230493316652 26290.888158777212 28595.074922422285 25036.42952142446 25308.874428424882 30061.591791899045 27327.84900040675 29623.114897311734 32324.855576951217 25571.733314451965 0.973623109046186 1.0281230386490388 1.1182298270826119 0.9790665815865921 0.9897207247238682 1.1755789653456779 1.068674096681679 1.1584320285621825 1.2640854329058209 1.0 14.64226233283188 2.739950727478096 24.999345311014018 1.1388557116934368 1.0217616254726285 0.3714806734225444 0.07492267307475577 135.57899906587366 2438229.271026773 0.02294445233028211 0.023154032947311505 549.4785296881352 -2.739950727478096 -0.1170940862208083 LEEEDEDEEDGESGCTFLVGLIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEEEDEDEEDGESGCTFLVGLIQK 24 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 ; 154.11 6.598499999999999e-08 77820000.0 75080.0 71055.0 59878.0 59049.0 60643.0 83979.0 76126.0 81284.0 89294.0 82167.0 False True 74675.77762217223 73420.02272134543 68308.30193109396 66524.59734556958 68365.52659077814 78173.72939530223 72443.49455043922 87349.82483178859 67288.6901782982 76923.03171329218 0.97078567964539 0.9544608563400989 0.8880084470109411 0.864820273770804 0.8887523680240581 1.0162590794220339 0.9417659826571956 1.1355483902059293 0.8747534864342954 1.0 16.231128003271714 2.7329442268716475 24.438502741671943 1.008694492203314 0.9115429128304722 0.24064013908243664 0.0687403007555039 420.77031677181054 1830884.4458818142 0.02214514542807328 0.021432133965594253 540.6848824506651 -2.7329442268716475 -0.09715157937284191 LEEEEQDILQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEEEQDILQR 11 0 H0Y735;A2AAZ6;A0A140TA46;A0A0G2JKY0;A0A096LP39;Q9HCM9-2;Q9HCM9 H0Y735 TRIM39;TRIM39-RPP21 E3 ubiquitin-protein ligase TRIM39 0 79.47399999999998 0.062922 22236000.0 4310.5 4255.6 4230.0 4941.7 5010.4 4968.7 4712.2 4048.3 3659.2 3734.5 False True 4287.2927469415745 4397.245073435478 4825.54723218089 5567.318713316086 5648.4447410325165 4625.225464061704 4484.252883647902 4350.4047028508685 2757.4391907679014 3496.161012733693 1.2262858407626043 1.2577352866243467 1.3802417035729522 1.5924091290529347 1.615613445850975 1.3229440655667002 1.2826219580034752 1.2443376283317202 0.7887048624833856 1.0 11.771555913128552 1.4484516229658075 2.4652317637105035 0.8953970421998498 1.394464182552831 0.6589394585874504 0.13643272942249052 0.17538034603140107 1.991227973582908 0.12135869232990694 0.039517959090952605 28.08352526671521 -1.4484516229658075 0.49906714035298116 LEEEGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEEGDR 7 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 134.85 0.0072917 293870000.0 223640.0 183640.0 150130.0 159650.0 151850.0 156480.0 144820.0 129860.0 205340.0 161760.0 False True 222435.94708873963 189752.34638727576 171266.99904664693 179861.67363071654 171187.19741453516 145662.90591429852 137814.50333387565 139550.81261571855 154736.70841503105 151436.33831029644 1.46884129377827 1.253017264577997 1.1309504769965912 1.1877048510125485 1.1304235121148318 0.9618755150816706 0.910049099651965 0.921514704943379 1.0217937790992548 1.0 17.2083519070369 5.868380637174316 0.3867023037309835 0.9329381465701192 2.534093923520651 0.8614071684036829 0.06141474874934171 4.873588636505508 0.29291098800159354 0.05200023523685258 4.316366455618787 738551.2494088495 -5.868380637174316 1.6011557769505318 LEEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEELR 6 0 Q07065;F6XZD3;Q8N283;H7C5W5;P41219;P41219-2;Q8IY63-2;Q8IY63;Q9ULE0;Q9ULE0-2;Q66GS9 Q07065;H7C5W5;Q8IY63-2;Q9ULE0;Q66GS9 CKAP4;ANKRD35;PRPH;AMOTL1;WWC3;CEP135 Cytoskeleton-associated protein 4;Ankyrin repeat domain-containing protein 35;Peripherin;Angiomotin-like protein 1;Protein WWC3;Centrosomal protein of 135 kDa 0 100.07 0.088599 200610000.0 373140.0 402070.0 378930.0 390650.0 362520.0 405610.0 424330.0 369510.0 444330.0 424270.0 False True 371131.0556997516 415452.6568935527 432280.050281396 440106.2499457531 408684.7731756165 377571.13540323795 403803.53680198477 397084.71253376093 334830.8252169603 397192.7253641784 0.9343853298407433 1.0459724722113983 1.0883382868733225 1.1080420708668017 1.028933177970219 0.9505993219212416 1.0166438381562628 0.9997280593940424 0.8429933476499608 1.0 18.599479674399944 2.869613958930286 4.9618950978004035 0.9699824632894114 1.049677165960455 0.2833695256350761 0.06225196430267987 0.320583531147496 11.60582403632987 0.019643548211692143 0.020967670643296767 740.6515890310566 -2.869613958930286 0.0796947026710435 LEEEPS(ph)ASSPQYACDFNLFLEDSADNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEEPSASSPQYACDFNLFLEDSADNR 27 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 LEEEPS(0.395)AS(0.295)S(0.3)PQY(0.01)ACDFNLFLEDSADNR 122.5 5.7787e-05 17087000.0 10223.0 9901.5 7150.7 10073.0 11045.0 12032.0 12077.0 7860.3 11211.0 8090.7 True False 10167.960503882072 10231.065441916859 8157.4564050013905 11348.240767192041 12451.515281156027 11200.256160281451 11492.789371379764 8446.875499794656 8448.199269703475 7574.344599203236 1.3424211653839548 1.3507525711192345 1.0769851170831988 1.498247223711711 1.6439066269134142 1.478709611582715 1.5173311988721399 1.1151955643374352 1.1153703345623016 1.0 12.886905343625683 1.6432744444755933 5.3823002001716 1.0765873205047543 1.4137520243461656 0.5399112892615383 0.14343495713534044 0.1267471362507213 7.931955324026668 0.08523060394488255 0.04096141890713656 43.981946352500756 -1.6432744444755933 0.3371647038414114 LEEEVDDVFLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEEVDDVFLIR 12 0 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 GRSF1 G-rich sequence factor 1 0 100.48 0.0030746 0.0 16539.0 18794.0 18234.0 17680.0 17346.0 25183.0 15627.0 19223.0 19759.0 16161.0 False True 16449.955861655642 19419.546928787084 20801.188707230835 19918.286187228754 19554.910282203036 23442.158484405572 14871.062309062801 20657.51787241615 14889.65920703514 15129.591143871798 1.0872703502181984 1.2835473704557392 1.3748678671767216 1.3165118606193535 1.2924942978464888 1.5494244531453025 0.9829123713687589 1.3653718514914015 0.9841415452304644 1.0 13.885085380806775 1.2296202912473488 24.860391525047827 0.9920704903489672 1.284264796435669 0.38294294806312623 0.1469526830370854 192.52300061469063 535328.1114209465 0.1258851742570648 0.03333452466322932 16.96759507041368 -1.2296202912473488 0.2921943060867018 LEEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEEVKR 7 1 Q8ND71 Q8ND71 GIMAP8 GTPase IMAP family member 8 0 89.55 0.028526 138400000.0 118880.0 134490.0 126120.0 112840.0 142110.0 165730.0 160960.0 151120.0 222430.0 170280.0 False True 118239.96328880955 138966.41834907804 143876.5997453083 127125.53243025423 160206.86614803827 154273.47518645643 153173.74987308803 162397.34177181107 167615.1069092983 159412.58461595752 0.7417228920393121 0.8717405760897953 0.9025422935831754 0.79746233797359 1.0049825522495246 0.9677622099793328 0.9608635995840634 1.0187234725730354 1.0514546722462443 1.0 17.282405999915593 4.22034990865289 0.3900751311387569 1.034905144550691 0.6582295546100426 0.7306068755257338 0.049961099517876896 2.0141214705638766 0.32831288211054244 0.043900914781113236 0.34382640929303715 16609.24566194704 -4.22034990865289 -0.3766755899406483 LEEHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEEHFK 6 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 ; 95.957 0.042755 486230000.0 895850.0 906580.0 727390.0 718530.0 753410.0 965570.0 883460.0 848330.0 1253770.0 1002520.0 False True 891026.8431382917 936754.9672608171 829800.1894127806 809495.8243274598 849352.2976890691 898822.4186072928 840723.6646550591 911636.6923324559 944795.1831572675 938538.3152994456 0.9493771629920137 0.9980998665589272 0.884140983789275 0.8625069548377318 0.9049734931898638 0.9576832442056654 0.8957798003023688 0.9713366811685182 1.0066666088702256 1.0 19.840056117909747 1.5377365627642852 3.9473546223330027 1.0006844716354077 0.9218389024817302 0.4456294787301731 0.03724061980527455 0.18385090474828797 6.339751803302061 0.025444304230321665 0.010478873188731372 34.493444323511746 -1.5377365627642852 -0.07884556915367757 LEEHQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEEHQAR 7 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 ; 133.81 0.0032352 198095000.0 496870.0 526950.0 487660.0 477480.0 476530.0 468090.0 519290.0 464510.0 621410.0 512460.0 False True 494194.90712744667 544489.212201998 556318.2891832935 537928.9190428731 537213.2708854039 435732.0400653377 494169.9588195579 499174.0949339864 468271.8319673924 479754.3640609213 1.0300998680747626 1.1349333179444645 1.1595898460918423 1.1212590428350215 1.119767345810295 0.9082398675377271 1.0300478658216146 1.0404784871755728 0.9760658100192481 1.0 18.871936404318465 2.774909495313848 24.405306137843773 1.0005980041367126 1.1173739548154853 0.6329152182674979 0.0461714879000629 299.6358314385947 201180.41785446226 0.014300399968942373 0.015167371900506772 595.5380236041979 -2.774909495313848 0.11677595067877267 LEELHVIDVK ddPTM_BT-474_Trastuzumab_2h_R1 5 LEELHVIDVK 10 0 Q16531;F5GY55;F5H2L3;F5GWI0 Q16531 DDB1 DNA damage-binding protein 1 0 ;;;; 201.33 2.4384e-07 3239490000.0 9288740.0 8744170.0 7742600.0 7370260.0 7160170.0 9672750.0 9649430.0 8860440.0 12487200.0 9433210.0 False True 9238730.455916023 9035214.412487611 8832690.780114371 8303334.160310215 8071975.20784744 9004095.559704311 9182650.206497725 9521651.02520267 9409896.879907345 8831174.461622603 1.0461496934597458 1.0231045091172979 1.0001717006609208 0.9402298863411419 0.914031904015214 1.0195807589164008 1.039799433971384 1.0781862669094187 1.06553176146612 1.0 23.074173884580116 2.3625759497984973 3.489426628839444 1.0551670736758727 0.9840421766453638 0.32040316704883054 0.04071624509401138 0.2652121085148032 6.310815695068163 0.016342428755075092 0.0132596869377784 230.44959530843573 -2.3625759497984973 -0.07112489703050895 LEELKESILADK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEELKESILADK 12 1 O75832;B1AJY5;B1AJY7;O75832-2;B1AJY6 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 ; 135.37 0.00011758 701510000.0 1129790.0 949500.0 827940.0 816270.0 813680.0 1317690.0 1293830.0 1211220.0 2038250.0 1292600.0 False True 1123707.3361714692 981103.5335151282 944506.7554165126 919609.6983059508 917297.3249407917 1226601.191808615 1231242.4999894246 1301607.3868505356 1535950.5986507088 1210105.161349464 0.9286030438200534 0.8107589033179878 0.7805162605564248 0.7599419684157338 0.7580310821233553 1.0136318982730024 1.0174673568174761 1.0756151022437024 1.2692703474943237 1.0 20.206700996299187 2.486544835777955 2.013389676411902 1.1013425786402533 0.803239982483283 0.723691836638398 0.08304873026544607 0.17156135581330528 1.4073398749543382 0.03427710274951104 0.02812977982791904 306.58071714838627 -2.486544835777955 -0.2981025961569703 LEELTNR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEELTNR 7 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 ;; 134.06 0.0074714 753320000.0 1018210.0 1059570.0 1102070.0 1153490.0 1006270.0 1234110.0 1365950.0 1091880.0 1678440.0 1413800.0 False True 1012728.0704937669 1094837.1469264098 1257231.8766358397 1299521.7157300063 1134412.519870428 1148798.880482457 1299873.7800642683 1173361.630054297 1264810.9519437258 1323570.0735849235 0.7651488128246712 0.827184875796576 0.9498793465695359 0.9818306878231376 0.8570853500773423 0.8679547108306143 0.9820966838148031 0.8865126625870414 0.9556055831014317 1.0 20.33600314658083 4.400037171687928 3.774291594706261 0.9277940611696158 0.7756998155965715 0.5822099867609598 0.04794287966561471 0.1489801344771234 4.033556122507065 0.011704209417683945 0.03934071249316383 25121.01435518168 -4.400037171687928 -0.1520942455730443 LEENGYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEENGYR 7 0 P22059;H0YCV6 P22059 OSBP Oxysterol-binding protein 1 0 90.862 0.062513 0.0 278380.0 287260.0 258370.0 280500.0 272430.0 263660.0 311620.0 280780.0 322410.0 277760.0 False True 276881.2330109253 296821.2754476634 294746.25020770176 316011.27123968676 307122.34568088147 245433.80478888046 296545.75009599735 301733.2293719507 242956.3755726604 260033.11899769978 1.0647921852345836 1.1414748882440973 1.1334950384158913 1.2152731638867975 1.181089343021718 0.9438559431771901 1.1404153103229153 1.1603646125346818 0.9343285828710518 1.0 17.988335857578363 LEENIDNIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEENIDNIKR 10 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494BZX8 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 115.0 0.004118800000000001 326600000.0 488030.0 590630.0 523620.0 413530.0 492370.0 576980.0 566110.0 537070.0 719200.0 622800.0 False True 485402.50070523086 610288.7625066261 597341.1446133715 465882.8555998139 555070.4009943684 537094.7306648258 538725.0965497891 577148.8905862004 541962.7967862582 583052.3707940938 0.8325195557375613 1.0467134567610752 1.0245068445563765 0.7990411821245152 0.9520077934652506 0.9211775092061188 0.9239737689704738 0.9898748714461908 0.9295267868444249 1.0 19.153265949100284 -0.9130286590029171 5.121639095221344 1.0000001609183415 0.9406144423958731 0.06171079668288226 0.07304551275990956 1.293211708296108e-07 2.742838561108349e-08 0.06806724179667359 0.016043559239995935 0.1221719036518534 0.9130286590029171 -0.059385718522468434 LEEPPELNRQS(ph)PNPR ddPTM_BT-474_Trastuzumab_2h_R1 7 LEEPPELNRQSPNPR 15 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR 250.94 2.7281999999999997e-19 20092830000.0 4332390.0 4644140.0 4217650.0 4650060.0 4287300.0 4854760.0 4928970.0 4242030.0 5427130.0 4966930.0 True False 4309064.893613775 4798717.392458086 4811458.459529011 5238757.119218605 4833262.242182007 4519161.8680757955 4690536.890606084 4558591.819191872 4089686.531316195 4649936.27499729 0.926693321967361 1.0319963777268932 1.0347364297012467 1.1266298739162093 1.0394254794781728 0.9718760862111877 1.0087314348429037 0.9803557617990214 0.8795145329854178 1.0 22.148779514281326 1.9593921699822643 1.2999385294027879 0.9463818662369733 1.0323634843684075 0.24374149099150877 0.05565883641786859 0.6170862655833802 1.932233605899518 0.04194698867583251 0.01900910611377386 91.07352997354837 -1.9593921699822643 0.08598161813143423 LEEQAAQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEEQAAQHK 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 103.7 0.0033798 185500000.0 122250.0 113700.0 124410.0 124420.0 128310.0 126550.0 154760.0 139580.0 161610.0 134360.0 False True 121591.81958325197 117484.43576689866 141925.8466088947 140171.55924293015 144649.51794704658 117801.8963666571 147273.66755938812 149996.16837287846 121783.38096305217 125785.02976861657 0.9666636785547686 0.934009682893211 1.1283206504777985 1.1143739402119457 1.149974032785392 0.9365335174094679 1.1708362102413954 1.1924802867940536 0.9681866052508356 1.0 16.940600705368382 4.242034439156135 24.991568921213332 1.097348412784091 0.9503366289922262 0.26979683746237504 0.0842752672051121 97.5190690499327 701545.333026282 0.020619732751228078 0.05199058440804843 17459.60600513534 -4.242034439156135 -0.14701178379186475 LEEQLGR ddPTM_BT-474_Trastuzumab_2h_R1 6 LEEQLGR 7 0 Q9BR76;A9Z1Z3-3;A9Z1Z3 Q9BR76 CORO1B;FER1L4 Coronin-1B;Fer-1-like protein 4 0 ;;;;; 255.97 2.5980000000000004e-12 4334880000.0 2788620.0 3396420.0 3078480.0 3169250.0 3006710.0 3194700.0 3142730.0 2905840.0 3338790.0 3117740.0 False True 2773606.3797648093 3509467.7865207572 3511903.225372158 3570476.7250494803 3389596.6963335993 2973857.908514887 2990704.143505529 3122688.5363565353 2515989.9419938712 2918763.163968497 0.9502677072276309 1.2023818272905393 1.203216235125154 1.2232841530708098 1.1613126882569442 1.018876058608154 1.0246477619099514 1.0698670501620184 0.862005514203148 1.0 21.476925720887113 2.7186470681360473 5.446682853695172 1.0067314450498948 1.1587287920051683 0.42732194660137746 0.08768188495689674 0.18195522102583797 17.8802710935206 0.02824837226524592 0.02754102217352292 523.1751025817034 -2.7186470681360473 0.15199734695527356 LEEQRPER ddPTM_BT-474_Trastuzumab_2h_R1 4 LEEQRPER 8 1 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7;P13693-2;Q9HAU6 Q5W0H4 TPT1;TPT1P8 Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8 0 ;;; 166.09 0.00029229 7695100000.0 5698870.0 6459750.0 5925190.0 5734380.0 5797910.0 6052900.0 6049370.0 5229490.0 6620520.0 6143100.0 False True 5668187.917123973 6674758.873748669 6759405.24932527 6460351.920040773 6536239.47159506 5634477.269993985 5756738.862262448 5619741.098612155 4988981.556422912 5751042.098627492 0.9855931881417992 1.1606172862726263 1.1753357275785596 1.1233358770895732 1.1365313206722931 0.9797315292368795 1.0009905619776833 0.9771691812086244 0.8674917468633295 1.0 22.455391967868437 2.706994539361034 5.764999898520978 0.9668773120929006 1.1225967553065253 0.6156882928147177 0.059636946507142796 0.1268046134892943 13.033325514163483 0.01922554293720094 0.018493601373349634 509.32446698200727 -2.706994539361034 0.15571944321362463 LEESHNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEESHNR 7 0 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 ; 194.25 0.00048478 376860000.0 526890.0 604950.0 578980.0 575710.0 528570.0 467810.0 598840.0 541830.0 653210.0 566390.0 False True 524053.2827829824 625085.395050002 660495.3514156253 648594.8269711232 595880.2564201582 435471.39580628875 569871.821409047 582264.1059569911 492235.1480655607 530242.5052891246 0.9883275624937549 1.1788670067277285 1.2456476891747446 1.2232041386751236 1.1237881732910933 0.8212683658184662 1.0747380976150032 1.0981090730165073 0.9283208025677993 1.0 19.01629279856864 2.9821351247838153 24.622916274051644 1.0034872602821119 1.1674779066707888 0.4225275446677015 0.0971268950209109 648.6088678455046 893970.5445451199 0.03040019879143279 0.032873415838640896 959.6991823336156 -2.9821351247838153 0.1639906463886769 LEESVALR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEESVALR 8 0 Q08209-3;Q08209-2;Q08209;Q08209-4;E9PPC8;E9PK68 Q08209-3 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 0 60.508 0.091851 417860000.0 204630.0 563410.0 477390.0 611870.0 560380.0 368710.0 321120.0 254420.0 132890.0 304780.0 False True 203528.2948165304 582162.7612614622 544602.3624517343 689332.6792635549 631741.0713675158 343221.94554998155 305586.1988024733 273406.11231858295 100141.040134769 285328.67946471437 0.7133117329753038 2.0403233294095005 1.9086842706223066 2.4159249625966965 2.214081923179549 1.2029002699408864 1.0709971369711684 0.95821462052641 0.35096731363505684 1.0 18.122265239379697 2.5094990941036883 3.123392402235677 0.866315525345261 1.899347146022496 0.5150921317118164 0.4638115290978566 0.21027670144907157 4.168179380258696 0.16934359629958956 0.14891434165473338 323.22064613187933 -2.5094990941036883 1.033031620677235 LEETDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEETDRR 7 1 P47897;A0A1B0GVU9;P47897-2;B4DDN1;A0A0U1RQT0;C9J165;A0A0U1RR66;A0A0U1RQL2;A0A0U1RQJ6;A0A0U1RRJ7 P47897 QARS Glutamine--tRNA ligase 0 ; 158.12 0.002297 1222290000.0 1133950.0 1332500.0 1222320.0 1276440.0 1134740.0 1201550.0 1313550.0 1280830.0 1506210.0 1275680.0 False True 1127844.939193689 1376851.4569867419 1394412.0314041008 1438037.1731236586 1279242.4128690807 1118489.6766444636 1250008.5682517076 1376412.0385229555 1135024.727679962 1194265.010235403 0.9443841438269871 1.1528860388494084 1.1675901240121291 1.2041189859863728 1.071154561094382 0.9365506542170207 1.0466760371764696 1.1525180983504233 0.9503960326663476 1.0 20.1876915788996 3.007404197446727 24.97751263101921 1.0358718464683385 1.1251679865695834 0.21621695658236562 0.08582812373137522 311.0781136572475 1049388.032677703 0.025844630214439515 0.03083115167172979 1017.194954802833 -3.007404197446727 0.08929614010124487 LEEVMQELR ddPTM_BT-474_Trastuzumab_2h_R1 8 LEEVMQELR 9 0 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ;;;;;;; 191.16 8.4262e-05 999673000.0 879778.0 989285.0 951976.0 836227.0 718308.0 865508.0 892688.0 785130.0 1017530.0 857676.0 False True 875041.3730005247 1022212.753189589 1086005.9460762737 942093.2524597131 809780.2660549226 805677.4691466813 849505.271040677 843720.3874093567 766773.3657034502 802938.3833866343 1.0897989074949617 1.2730899086902523 1.3525395827955276 1.1733070332073943 1.008521055674821 1.0034113274651213 1.0579955929589924 1.050790950920433 0.9549591619587953 1.0 19.61492975558754 3.357189015437948 4.06118710150367 1.0202426291471245 1.2448523819437727 0.7071612793125172 0.06671873144108852 0.11964638750544794 3.597907994068564 0.019101603483136557 0.02628781470368906 2276.0878235772975 -3.357189015437948 0.2246097527966482 LEEWLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEEWLGR 7 0 P56192;P56192-2 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ;;; 162.51 0.0029527 732765000.0 1035862.0 1194590.0 1048850.0 1120026.0 1074938.0 1197552.0 1132750.0 1077842.0 1265030.0 1172670.0 False True 1030285.0340870878 1234351.2060050946 1196518.9632323699 1261821.1767611464 1211824.9826433058 1114768.0489741836 1077954.554974779 1158276.043210776 953280.3070335377 1097829.1966267023 0.938474798495834 1.1243563295619057 1.0898953743523232 1.149378410264859 1.103837451551551 1.0154294059581666 0.981896417299711 1.0550603379558574 0.8683320774877187 1.0 20.066222182549097 2.600861206592097 4.012342025838882 0.989709618726229 1.08760041068509 0.3359490456737374 0.06851421595774615 0.28995706397789417 8.013097673801543 0.022713639255377973 0.021151279240372012 398.8974009093432 -2.600861206592097 0.09789079195886108 LEFLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEFLHK 6 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ; 109.7 0.029331 2490700000.0 4165500.0 4299200.0 3629600.0 3653400.0 3573300.0 4514900.0 4078900.0 3921000.0 5167600.0 4471100.0 False True 4143073.410830558 4442296.27307872 4140616.1309512495 4115920.0654084613 4028338.574391563 4202795.589931414 3881588.0240888344 4213604.930434565 3894114.2222923595 4185750.570098704 0.9898041800261548 1.0612902509797584 0.9892171216627487 0.9833170888898437 0.9623933645660522 1.0040721537385608 0.9273338100500582 1.0066545676502658 0.9303263911878371 1.0 21.997054912928487 4.046093048150358 8.382637198113144 0.974581030140169 1.0257630553845332 0.30766336860769206 0.030848594034062007 0.2787189568271737 45.27932637737901 0.00693265696673337 0.015016534027364636 11119.699427496382 -4.046093048150358 0.051182025244364215 LEGDS(ph)DDLLEDS(ph)DSEEHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEGDSDDLLEDSDSEEHSR 19 0 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 2 LEGDS(1)DDLLEDS(1)DSEEHSR 163.15 1.3860999999999997e-11 302560000.0 142080.0 141260.0 127590.0 122090.0 121740.0 147050.0 134250.0 129450.0 164470.0 139900.0 True False 141315.05706657204 145961.7537065267 145553.56296783924 137546.58148183036 137242.86739048766 136884.77961846627 127755.814615197 139110.21633378076 123938.57228508883 130971.46222558418 1.078975943806538 1.1144546394016994 1.1113380006183253 1.0502026864823517 1.0478837531347223 1.045149663082306 0.9754477230707818 1.0621414311934492 0.9463021194007748 1.0 16.998892967186002 3.098063978822061 0.7380535972666243 1.0004254923634472 1.1087130847925355 0.6343837008129607 0.031581250497134755 0.47456332750774904 0.5744408795426426 0.018685382204347564 0.0281035817041029 1253.3257971399478 -3.098063978822061 0.10828759242908825 LEGDSDDLLEDS(ph)DSEEHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEGDSDDLLEDSDSEEHSR 19 0 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 1 LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(1)DSEEHSR 298.1 5.690399999999998e-50 4088900000.0 3035000.0 3233800.0 2875600.0 2686500.0 2965800.0 3293000.0 3136500.0 2816800.0 3653400.0 3162500.0 True False 3018659.897220197 3341435.0781266214 3280459.484836731 3026610.62454695 3343477.0503261676 3065362.6608881997 2984775.512406442 3027003.9194205776 2753068.5230518854 2960666.5424475293 1.0195879387094793 1.1286090582036024 1.108013833305535 1.0222733905199963 1.1292987583674912 1.0353623472753943 1.0081430885961855 1.0224062304963963 0.9298813235400613 1.0 21.497490579377644 2.1265557609871735 1.1976042789381296 0.9774400528803383 1.0832256686353174 0.5085092985091413 0.04221159440654894 0.3808175003348994 1.0285438370112263 0.028382100227642308 0.014600934322093605 133.83070352760916 -2.1265557609871735 0.10578561575497913 LEGELQAPDLELSLPAIHVEGLDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEGELQAPDLELSLPAIHVEGLDIK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 243.35 1.0534999999999999e-38 457360000.0 548710.0 561950.0 517710.0 460900.0 455470.0 707530.0 623120.0 560080.0 831000.0 655520.0 False True 545755.8063274124 580654.1660440521 590599.0679840122 519249.8927428583 513471.40471780347 658620.1164464713 592977.3050504397 601876.0136286131 626211.1848295056 613684.1523810928 0.8893105748451893 0.9461775471814216 0.9623827920152239 0.84611911636983 0.8367030543733871 1.0732232759979659 0.9662581358011111 0.9807586056986087 1.0204128335395464 1.0 19.227136802614186 2.741587028880608 24.995816128654333 1.0012912365922633 0.8998199299036482 0.6055105944244036 0.04497948471834833 215.95836895232378 1783651.927909298 0.014856570619313234 0.015172235728884105 551.5527177312272 -2.741587028880608 -0.10147130668861504 LEGENTQDKNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEGENTQDKNK 11 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 104.24 0.0023949 108270000.0 94266.0 88867.0 84639.0 86187.0 77709.0 112210.0 123850.0 104450.0 164370.0 109760.0 False True 93758.48232993718 91824.88437376416 96555.43550462382 97098.26536304785 87604.78053267128 104453.18681392798 117858.90234705493 112244.58938635298 123863.2159451574 102755.02282973629 0.9124467081798399 0.8936291564638817 0.9396663330474355 0.9449490904589489 0.8525595938782597 1.0165263355252767 1.1469892089104545 1.0923513643935516 1.2054224945324288 1.0 16.648849391306697 2.475334008295684 4.066281875295438 1.1158072172822469 0.9121582907715128 0.7580447403733008 0.05388240606259774 0.09403318847255217 3.6236289952412712 0.01765400212666682 0.015349103293095372 298.7679507648652 -2.475334008295684 -0.20364892651073407 LEGFHTQISK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEGFHTQISK 10 0 Q06323;Q06323-3;Q06323-2;H0YKK6;H0YLU2 Q06323 PSME1 Proteasome activator complex subunit 1 0 ;;; 184.24 1.5807e-06 9861550000.0 15727700.0 16119750.0 15008660.0 13894170.0 13107000.0 16528000.0 17146370.0 14833220.0 21092100.0 17126600.0 False True 15643023.810711728 16656286.134155342 17121748.870388687 15653170.497398648 14776098.7587245 15385458.262727046 16316934.577605749 15940150.197964976 15894234.574659936 16033565.725180056 0.9756422294851732 1.0388385478095699 1.0678690669225053 0.9762750697941125 0.9215728436201339 0.9595780830314505 1.0176734768349547 0.9941737521886117 0.991310033406898 1.0 23.934591968180193 3.7056618065810585 24.680718783189945 0.9798017351687953 1.0285888160991288 0.31066494395627475 0.03231812021258332 661.9198345961429 496573.0110310912 0.00923243720690587 0.014303997796242777 5077.638831189277 -3.7056618065810585 0.04878708093033346 LEGGRQDS(ph)EDEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LEGGRQDSEDEEER 14 1 A0A3B3ISZ4;Q9BYE7-3;Q9BYE7 A0A3B3ISZ4 PCGF6 Polycomb group RING finger protein 6 1 LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER 192.22 2.4124e-07 841240000.0 516590.0 536370.0 510860.0 640500.0 648400.0 612200.0 609650.0 560870.0 720500.0 640750.0 True False 513808.73683854466 554222.7512074881 582784.6475252798 721587.2343280554 730969.8966321029 569880.054963789 580158.9004108363 602724.9674401511 542942.4292053657 599856.786426326 0.856552344601423 0.9239251163753524 0.97153964198229 1.2029325176546624 1.2185740216208758 0.9500268528407841 0.9671623519793103 1.0047814429689335 0.9051200911470383 1.0 19.194258578200188 4.2141184981153215 3.025630161087017 1.035876521749338 0.8787343716606993 0.2590602191938156 0.09766384453301966 0.36221828923465815 6.664207911950508 0.027353881214592167 0.08040865716054374 16372.6319101388 -4.2141184981153215 -0.15714215008863863 LEGMFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEGMFR 6 0 Q13618;Q13618-2;Q13618-3;A0A087WTG3;A0A669KAU6;F8W8F5;H3BMH1;A0A669KB08;H3BS30;A0A669KBA3;A0A669KAB9;A0A669KB98;H3BV08;H3BS77;A0A669KAX6;H3BNN7;P20807-5;P20807-4;P20807-2;P20807-3;P20807 Q13618 CUL3;CAPN3 Cullin-3;Calpain-3 0 107.65 0.07231 104620000.0 54969.0 70699.0 67932.0 62265.0 62685.0 57095.0 63816.0 59351.0 65801.0 61130.0 False True 54673.05301163004 73052.17347655202 77496.23512447103 70147.74261582567 70667.56318689583 53148.15703717331 60728.976279205985 63780.07299827136 49585.22523822664 57228.63106397391 0.9553444140663251 1.27649695822515 1.354151474247928 1.2257455981676364 1.2348288238434186 0.9286987308461183 1.0611642310877427 1.1144783967831384 0.8664408761201544 1.0 15.80444947689873 2.751948908656608 24.62743008677159 1.0161271701305734 1.2220053398611586 0.4569180058613507 0.11564148608615926 625.74508255765 1151041.1884762605 0.03578288415407241 0.03774507786308576 564.8705183122352 -2.751948908656608 0.20587816973058515 LEGPVS(ph)PDVEPGKEETEESK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEGPVSPDVEPGKEETEESK 20 1 O14686;O14686-3;A0A3B3ISC8 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK 230.03 1.1838e-25 1155670000.0 2496040.0 1697400.0 1384940.0 1327760.0 1359630.0 2105930.0 2130280.0 2156190.0 3583800.0 2159040.0 True False 2482601.5979761123 1753896.9329000318 1579927.5138857234 1495854.2798617017 1532770.8213416173 1960352.0159259895 2027230.2179401256 2317095.8467109716 2700620.5104596647 2021248.21875286 1.2282517183900916 0.8677296121414578 0.7816593228023038 0.7400646125415837 0.7583288421089417 0.9698719819456689 1.002959556937028 1.1463687760925543 1.3361152209826002 1.0 20.94681507163286 2.0091085176172636 1.8336604335354056 1.1812706732023912 0.866780534907575 0.387928754384842 0.15164428726236642 0.33931933778492385 2.1324972045886814 0.09276139771188777 0.047274909446444205 102.11946188003627 -2.0091085176172636 -0.3144901382948162 LEGSDVQLLEYEASAAGLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEGSDVQLLEYEASAAGLIR 20 0 G3V1D3;G3V180;Q9NY33-4;Q9NY33;Q9NY33-2 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 75.462 0.010898 0.0 5716.4 7274.3 6661.6 7509.7 6407.7 5745.7 7207.1 6068.3 9539.4 7808.8 False True 5685.623537551743 7516.4206780927925 7599.495376334809 8460.427250013106 7223.682613586555 5348.513282922967 6858.465039204363 6521.147360203028 7188.542691411051 7310.435698549969 0.7777407218942491 1.028176840346695 1.0395406908294367 1.1573082096449108 0.9881329802298074 0.7316271565022929 0.9381745934192056 0.8920326542912488 0.983326163834107 1.0 12.835741677352173 2.9784915555652303 24.961366721996207 0.8996292659415503 1.0138411413881196 0.1319853398690538 0.11137315717576644 1258.0961724057295 1460070.13069354 0.033739757535663314 0.03610985452412306 951.6813434128117 -2.9784915555652303 0.1142118754465693 LEGVDGGQS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEGVDGGQSPR 11 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 LEGVDGGQS(1)PR;LEGVDGGQS(1)PR;LEGVDGGQS(1)PR;LEGVDGGQS(1)PR 148.69 3.6409e-05 1709530000.0 1760510.0 1907810.0 1728500.0 1740370.0 1671070.0 2116750.0 2168180.0 1793610.0 2306280.0 1938020.0 True False 1751031.6097710482 1971310.3025544987 1971857.7756086704 1960700.6635558414 1883870.8592921165 1970424.0547935325 2063296.850148065 1927458.285967034 1737928.196568701 1814333.9043776025 0.9651098982090235 1.086520126090432 1.0868218748770533 1.0806724488943777 1.0383264374582517 1.0860316560470582 1.1372200261317764 1.0623503652312767 0.9578877363066683 1.0 20.791008558740582 1.2823234891770434 7.6490587024841865 0.9791247213621744 1.072325428742942 0.40366315116505325 0.04300674643270138 0.1781952307974327 26.293246166306375 0.0290627307650546 0.01036748395489611 19.156823114507862 -1.2823234891770434 0.09320070738076758 LEGVEGVAHIIDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEGVEGVAHIIDPK 14 0 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 102.5 0.0011699000000000002 797550000.0 2358900.0 2137200.0 1936380.0 1758910.0 1886070.0 2388600.0 2339900.0 2097400.0 3313000.0 2479300.0 False True 2346199.9444984277 2208335.41003532 2209005.4726833175 1981587.8256548971 2126249.834887276 2223481.7041595993 2226710.097713962 2253918.6383813955 2496555.5419255765 2321068.9513644786 1.0108273358786586 0.951430335034689 0.9517190221275923 0.853739318898729 0.9160649163986813 0.9579559034006676 0.9593468114788033 0.9710692295704496 1.0756059359882157 1.0 21.146357950392623 1.4657297340746838 3.179149013930875 1.0370608679565785 0.9401353021118408 0.43959720720344064 0.04155294873774229 0.2144202603591812 4.170343646219887 0.03210443985154085 0.011280901863120004 29.223332138277552 -1.4657297340746838 -0.09692556584473766 LEGVLAEVAQHYQDTLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEGVLAEVAQHYQDTLIR 18 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 240.21 6.0504999999999995e-24 1288350000.0 751700.0 698130.0 616090.0 663180.0 635550.0 594110.0 615010.0 621390.0 715080.0 681300.0 False True 747652.9307217207 721366.8350215025 702830.1168497227 747138.5200026223 716483.5253000186 553040.5740845085 585259.6167336483 667761.2771544853 538858.1155810863 637818.8507097248 1.172202624443883 1.1309901458992795 1.1019274768496687 1.1713961090539318 1.1233338815601963 0.8670809485626202 0.9175953581215233 1.0469450321379534 0.8448450762806379 1.0 19.282787211449293 2.810387280249143 7.158886999623767 0.9459567777874054 1.1401304616198558 0.7534118458450337 0.05841113321597482 0.14208456405526684 12.32462492231748 0.018096243951232584 0.019191846873810994 646.2302452272957 -2.810387280249143 0.19417368383245037 LEGYWGEAQSLCQAVDEHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEGYWGEAQSLCQAVDEHLR 20 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 ;;; 248.91 2.5437e-30 798320000.0 796980.0 907820.0 875400.0 830260.0 825430.0 963380.0 888550.0 849080.0 1037000.0 960900.0 False True 792689.1482328025 938036.2399112225 998648.7108867979 935370.8308715252 930543.617793084 896783.8081525887 845567.441909371 912442.6611408783 781445.2450880833 899574.5393321211 0.8811822851515179 1.0427554348166155 1.1101344771587613 1.0397924685218198 1.0344263616931126 0.9968977210253145 0.9399637327854486 1.0143046754283542 0.8686831506683798 1.0 19.778883303517087 2.4862814705296596 3.9915852604283244 0.9624999634105749 1.0282653053120618 0.1794978154682143 0.06493519484336358 0.38340888899147796 13.973538667556523 0.022753628166222176 0.019951668163636846 306.39485655615283 -2.4862814705296596 0.06576534190148697 LEHAFCTETRPYNQGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEHAFCTETRPYNQGAR 17 1 Q9BV20 Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase 0 ;; 163.7 1.6130999999999995e-09 853260000.0 830250.0 899110.0 892860.0 871850.0 832200.0 883490.0 935830.0 832220.0 1050690.0 943550.0 False True 825780.0262494466 929036.332826527 1018566.9271217559 982226.1206072056 938175.7371641501 822416.4158117565 890560.3276822324 894324.4823275331 791761.5280246851 883331.8311862035 0.9348469024834392 1.051741033241096 1.1530965953688646 1.1119559897306084 1.0620875463123503 0.9310390351351369 1.0081832174963308 1.0124445318885065 0.8963353295685598 1.0 19.752595974910488 2.8269703685304814 7.222543311404148 0.9772160233610402 1.0704937075374825 0.35305358699408473 0.06222923432688202 0.3245290557827598 23.11588947968431 0.019828933849753316 0.02105104920617905 671.3830435829568 -2.8269703685304814 0.09327768417644233 LEHALEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEHALEK 7 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9;H0YAC6 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 ;;; 150.17 0.0019672 1433470000.0 3183920.0 3095060.0 2911560.0 2660500.0 2538690.0 3206230.0 3283200.0 2676720.0 4392640.0 3254110.0 False True 3166778.128486769 3198077.201096722 3321482.340266809 2997319.027212792 2861977.1235054783 2984590.8667535884 3124379.072958021 2876470.438508749 3310132.7303603874 3046429.9138162658 1.0395046720506176 1.0497786890132283 1.0902868059439401 0.9838792002465757 0.939452803599961 0.9797011423823595 1.0255870515150334 0.9442102788786602 1.0865612615436082 1.0 21.538688119410956 3.724300150495211 24.567247266560482 0.9883167434653704 1.058848918398648 0.34063237293638193 0.04129086565536293 610.920453636926 1052465.3595656967 0.010640158219876933 0.016566848924445307 5300.29632505888 -3.724300150495211 0.07053217493327768 LEHDVNIQFPDKDDGNQPQDQITITGYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEHDVNIQFPDKDDGNQPQDQITITGYEK 29 1 Q00341;A0A024R4E5;Q00341-2 Q00341 HDLBP Vigilin 0 ; 349.64 3.883999999999997e-120 1444970000.0 1448900.0 1069350.0 1028310.0 960110.0 1073700.0 1491830.0 1411620.0 1353480.0 1907420.0 1429730.0 False True 1441099.283387925 1104942.6683142758 1173087.1097692526 1081659.8275577037 1210429.3306815054 1388703.3034900841 1343334.5476879263 1454483.55043218 1437361.899118526 1338483.4073465655 1.0766657811954405 0.8255183906274451 0.8764300725212593 0.8081234489876915 0.9043289771377018 1.0375199990286585 1.0036243559798608 1.0866653575598486 1.0738735282254854 1.0 20.352167823889566 2.747769797845092 4.1788066428623205 1.0473818312486516 0.8863384343165503 0.4870522609804925 0.07251340988450915 0.16634838781947522 7.140124854994872 0.022940523548538955 0.02313715725488155 559.4609749746041 -2.747769797845092 -0.16104339693210123 LEHEVDLCR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEHEVDLCR 9 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;A0A087X1S3 Q7Z6Z7-2;A0A087X1S3 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 134.66 0.00024271 727770000.0 403480.0 467740.0 426540.0 406580.0 376890.0 388750.0 406570.0 361480.0 521690.0 399130.0 False True 401307.7085108422 483308.4431451992 486593.12444785744 458052.98631241295 424884.7074979531 361876.62751906697 386902.65585177374 388455.4731582474 393126.48978785146 373657.18168761523 1.0739997200063007 1.2934541789410985 1.302244806991717 1.2258642647884506 1.1370976614954107 0.9684722929308046 1.0354481990800648 1.0396039262614891 1.0521047341102974 1.0 18.511355725588686 3.0127830469533907 3.2456477000736648 1.0248339489018414 1.2338787917554455 0.7024651795058107 0.06266560951449474 0.13266678840056909 2.9141140492634388 0.01937609918312451 0.0225341832677134 1029.8715166641102 -3.0127830469533907 0.20904484285360403 LEHEVFDAGEVFGIMQVEEVEEEEDEAAR ddPTM_BT-474_Trastuzumab_2h_R1 7 LEHEVFDAGEVFGIMQVEEVEEEEDEAAR 29 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 ;;;;;; 294.37 9.257599999999996e-81 430401000.0 153632.1 173306.8 157228.0 167191.19999999998 160499.5 176202.4 179591.0 159952.69999999998 195021.2 179502.0 False True 152804.96184373111 179075.21207182689 179364.33574972514 188357.58877749983 180938.15996993214 164021.9428238344 170903.49722575647 171889.182697353 146960.83841019473 168046.028680606 0.9093042129198866 1.0656319192891095 1.0673524221785158 1.120869027708466 1.0767178575450265 0.9760536688170126 1.0170040825575324 1.0228696509338608 0.8745272920999133 1.0 17.358496923238665 1.3771492878793905 6.859016354086435 0.9377407030476607 1.0366542186360923 0.2703087590650183 0.062185177954120575 0.27128795454449023 15.456704835224981 0.04228107467833537 0.015401117077203836 23.831385277871963 -1.3771492878793905 0.09891351558843164 LEHEYIQNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEHEYIQNFK 10 0 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 ; 172.27 3.7663e-06 4029300000.0 6231200.0 6770800.0 5986300.0 5643600.0 5721000.0 7053500.0 7064000.0 6314100.0 8902400.0 6971000.0 False True 6197651.911551405 6996161.984964961 6829119.0061476305 6358079.181348658 6449535.43897634 6565908.147153032 6722287.332899452 6785290.20435014 6708522.806048366 6526104.811826633 0.9496709124744664 1.072027217872212 1.0464310952793576 0.9742533049463934 0.9882672168072548 1.0060990953216484 1.0300611967980189 1.0397151746710855 1.0279520478879154 1.0 22.63779072719346 2.2356475393643502 23.96517950152741 1.029107418889552 1.008692060877045 0.05566857435432615 0.03389839166670702 131.9393237390198 1085397.7199849281 0.012596621272276736 0.009725291853805858 172.04717239622744 -2.2356475393643502 -0.020415358012506823 LEHGDGGILDLDDILCDVADDKDR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEHGDGGILDLDDILCDVADDKDR 24 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 0 ;; 194.37 1.5501e-18 85650000.0 133867.0 107819.0 102264.0 94717.0 86889.0 129889.0 125742.0 111589.0 195473.0 125001.0 False True 133146.27494602188 111407.6902370381 116661.88230537738 106708.1624884471 97953.79911854833 120910.07915581764 119659.3790789132 119916.33781746052 147301.29835400486 117023.3291612598 1.1377754837460181 0.9520126545324713 0.9969113264981179 0.911853758163056 0.8370450560637068 1.0332134628404037 1.0225258496450813 1.0247216403509947 1.258734471235403 1.0 16.83643664108486 1.4693778101272774 4.351101134093257 1.13462716422977 0.9794220304339635 0.25745255114052357 0.09507320202680847 0.22926335670467674 8.769590211937883 0.06181719053061326 0.023920202114368908 29.469842183435976 -1.4693778101272774 -0.15520513379580658 LEHPVLHVSWNDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEHPVLHVSWNDAR 14 0 A8MXB9;C9J660;J3KQJ1;Q8NBJ7;A0A494C1B1;H7C3B2;C9JL30;Q8NBJ7-3;Q8NBJ7-2;F8WA42 A8MXB9 SUMF2 Sulfatase-modifying factor 2 0 ; 151.54 3.9961e-06 481330000.0 192886.0 399676.0 412688.0 502952.0 465083.0 345208.0 412677.0 249101.0 215514.0 327040.0 False True 191847.523207649 412978.9740507559 470790.8832516001 566625.6716311695 524308.5632870876 321344.58349222393 392714.23693076754 267690.18152924825 162403.4624396462 306168.0272069692 0.6266086140926803 1.348863817747967 1.5376879406592838 1.8507016451072182 1.7124863365718317 1.0495693702040134 1.282675531188935 0.8743244158159271 0.5304390008361705 1.0 18.223964106071506 1.8595193511512533 1.6270125860848828 0.7473575683623963 1.4121768396990162 0.34829404608804315 0.3397677596328574 0.4052999484541241 2.0232506429443915 0.24930457729957572 0.10858679946689452 72.36346450373713 -1.8595193511512533 0.6648192713366199 LEHQGIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEHQGIR 7 0 O75436;S4R3Q6;O75436-2 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ;;; 123.69 0.0042192 696550000.0 702310.0 821890.0 788260.0 784950.0 713350.0 768540.0 719240.0 660560.0 912320.0 795260.0 False True 698528.8409939763 849246.1118070029 899240.1563212553 884324.5895172642 804190.8941432922 715412.6387485621 684447.6134363812 709854.3414557141 687490.9604616783 744505.8259436594 0.9382449628363789 1.1406843065742105 1.2078349490166453 1.1878007648850628 1.0801673621881764 0.9609228213114092 0.9193314405147138 0.9534570673855713 0.9234191815628644 1.0 19.50592361273665 2.7992710684582875 3.3401479876020774 0.9446290726509954 1.1270537733187729 0.5589306036767835 0.07116942858429025 0.17894214043834836 3.9834734846084325 0.02363287355788199 0.02459048905435418 629.8992169426225 -2.7992710684582875 0.1824247006677775 LEIEPEWAYGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEIEPEWAYGK 11 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ; 187.64 8.1384e-06 332160000.0 1029170.0 998310.0 927540.0 860300.0 849360.0 1081870.0 981480.0 976040.0 1219540.0 1050620.0 False True 1023629.063071536 1031538.1448588609 1058129.569677793 969213.8917914539 957520.9614488612 1007082.8733480459 934002.0627822963 1048877.0610306945 919000.7079987674 983568.5321189648 1.0407297810415572 1.048770991723934 1.0758066521284455 0.9854055514600637 0.9735172793562359 1.0239071711438577 0.9496054746384736 1.0663995713354426 0.9343535076492384 1.0 19.907666053126256 3.731924566930122 24.946835352525824 0.995669124107208 1.0544693271540084 0.39822585167296143 0.036018020992607494 517.0299076600697 1943661.5642620726 0.009182944213384359 0.014619794597894316 5394.169224796892 -3.731924566930122 0.05880020304680045 LEIEPEWAYGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEIEPEWAYGKK 12 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ; 154.28 0.00011442 878740000.0 915090.0 1055220.0 918570.0 880460.0 831210.0 1159740.0 1141940.0 1033950.0 1677660.0 1314430.0 False True 910163.2571160567 1090342.3598060396 1047896.6716464303 991926.1457244025 937059.6665323398 1079569.9035343088 1086699.9995655704 1111108.5992917158 1264223.1724922587 1230541.95205986 0.7396442320332867 0.8860667919373785 0.8515733006032898 0.8060888489530749 0.7615016009521276 0.8773125546245438 0.8831068276432947 0.902942477850333 1.02737104604684 1.0 20.23086241281468 1.5987029984298267 1.1518229523255172 1.0171692406188269 0.8194823041650033 0.7257597910118996 0.045742189031470634 0.2399633150910647 0.6067214988184942 0.03991102014808614 0.01460642223700937 39.69200143912902 -1.5987029984298267 -0.19768693645382351 LEIFHPFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEIFHPFFK 9 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 0 ; 113.22 0.0018358 141172000.0 316724.0 367396.0 335280.0 308938.0 304061.0 365355.0 362240.0 317930.0 479190.0 366425.0 False True 315018.7931753448 379624.5537644276 382484.5096939979 348049.51912387356 342781.36603925645 340098.8688031604 344717.067308819 341655.55101582804 361100.0453170287 343039.4427877742 0.9183165370584959 1.1066498670804081 1.1149869723016863 1.014604957072528 0.9992476761668558 0.991427883742124 1.0048904712164037 0.9959657940186128 1.052648763601298 1.0 18.38801494192172 3.5036505726153746 24.488128723403772 1.0056280108544393 1.0546751674715358 0.09555710838434406 0.05245134856661555 1053.3279286804964 972280.7251973643 0.013587474430601366 0.02096793309511132 3188.97102026688 -3.5036505726153746 0.049047156617096466 LEILSGDHEQR ddPTM_BT-474_Trastuzumab_2h_R1 6 LEILSGDHEQR 11 0 Q4G0J3;Q4G0J3-3;H0YA82;Q4G0J3-2 Q4G0J3 LARP7 La-related protein 7 0 ;;;;; 274.2 4.0986999999999996e-27 3140880000.0 1588740.0 2176290.0 1998680.0 2055440.0 2054200.0 1949120.0 2028140.0 1819300.0 2157060.0 2044830.0 False True 1580186.4003656064 2248726.497054911 2280076.7711620103 2315658.4932509875 2315790.193802691 1814381.9221349547 1930031.1199528158 1955065.404218211 1625481.4661231432 1914327.1987329598 0.8254526192865504 1.174682415076838 1.1910590690406164 1.2096461330036254 1.2097149303083865 0.9477909123037295 1.0082033631608274 1.0212806909457353 0.8491137080427026 1.0 20.868406007113457 2.7274082722056847 24.84575464868037 0.9747040376090353 1.1337251739750278 0.3138920164580463 0.11487550034395808 836.5198761280955 1863637.5218261825 0.03721197475225109 0.03538186287940703 533.8365094954244 -2.7274082722056847 0.15902113636599247 LEIS(ph)PDSS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 3 LEISPDSSPER 11 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 2 LEIS(1)PDS(0.083)S(0.917)PER;LEIS(1)PDS(0.001)S(0.999)PER;LEIS(0.999)PDS(0.003)S(0.997)PER 225.79 7.6182e-12 1619580000.0 1809780.0 2111340.0 1679650.0 1901190.0 1847110.0 2189870.0 2055970.0 1778530.0 2216430.0 1967480.0 True False 1800036.3455654625 2181614.675568016 1916130.120220481 2141880.4590665954 2082328.5098212843 2038489.441299496 1956514.8765318901 1911252.9397923448 1670220.5251403854 1841913.741955626 0.97726419243406 1.1844282530037031 1.0402930802753318 1.162856006922715 1.1305244444348417 1.1067236184117712 1.0622185132592517 1.0376451927456163 0.9067854194773812 1.0 20.81277406996802 1.5736645274236372 2.164541741499576 0.9553459870006792 1.1030599080325347 0.4524976493557231 0.061027221121799896 0.2264881514084174 2.2621189351121807 0.043367369524676826 0.015528916985656864 37.468346463413276 -1.5736645274236372 0.14771392103185554 LEIS(ph)PDSSPER ddPTM_BT-474_Trastuzumab_2h_R1 2 LEISPDSSPER 11 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 LEIS(0.786)PDS(0.209)S(0.005)PER;LEIS(0.761)PDS(0.237)S(0.002)PER 158.42 3.1321e-05 392050000.0 408010.0 515660.0 475390.0 486990.0 432450.0 491650.0 460850.0 438240.0 570330.0 503870.0 True False 405813.31949417264 532823.4313769473 542320.7798360458 548642.8840677902 487519.94416803354 457663.3927196127 438556.9248820374 470943.694137629 429779.81353045977 471712.58521519 0.8602978428252982 1.129551019152646 1.1496847801689352 1.1630872299442794 1.0335105728536633 0.9702166256828441 0.9297121565708759 0.9983700009250119 0.9111052513775926 1.0 18.847548566687262 2.88598352429933 3.6131043982729096 0.9622432678650026 1.085915668137733 0.2889164282664404 0.08349546036043157 0.2951046659881193 7.003396707270926 0.026361898470906493 0.028469277135060863 769.1012625671702 -2.88598352429933 0.12367240027273052 LEIT(ph)SENGEKSDDGTQDLLHFPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEITSENGEKSDDGTQDLLHFPTK 24 1 E9PRS0;E9PLV1;Q9NQV6-2;Q9NQV6-1;Q9NQV6-5;Q9NQV6;Q9NQV6-4;Q9NQV6-7;Q9NQV6-6 E9PRS0 PRDM10 PR domain zinc finger protein 10 1 LEIT(0.384)S(0.384)ENGEKS(0.232)DDGTQDLLHFPTK 102.6 0.004957100000000001 43319000.0 50764.0 52591.0 62299.0 49807.0 51443.0 86161.0 77636.0 77781.0 128800.0 70114.0 True False 50490.692264410616 54341.45964306916 71070.15768738465 56112.56109317321 57993.961123450375 80204.89287117764 73880.45008167907 83585.41318391504 97058.96583157674 65639.2644923846 0.7692147779972229 0.8278803862796758 1.0827384833909914 0.8548627338699588 0.8835254564770265 1.2219041985225616 1.1255526802901732 1.2734056944469958 1.4786723553679892 1.0 16.002271452661674 2.7325743128383793 7.561085820952622 1.23217509995657 0.8896858322040859 0.6040700257331496 0.13589604412951453 0.09200824296923651 43.12915878748535 0.04290473265486477 0.04239712951430489 540.2245455610647 -2.7325743128383793 -0.342489267752484 LEITSENGEKS(ph)DDGTQDLLHFPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEITSENGEKSDDGTQDLLHFPTK 24 1 E9PRS0;E9PLV1;Q9NQV6-2;Q9NQV6-1;Q9NQV6-5;Q9NQV6;Q9NQV6-4;Q9NQV6-7;Q9NQV6-6 E9PRS0 PRDM10 PR domain zinc finger protein 10 1 LEIT(0.278)S(0.241)ENGEKS(0.481)DDGTQDLLHFPTK;LEIT(0.012)S(0.069)ENGEKS(0.918)DDGTQDLLHFPTK 181.31 2.0128e-17 416140000.0 501560.0 519490.0 556730.0 405310.0 493200.0 865990.0 667890.0 686280.0 1259400.0 653980.0 True False 498859.6566885543 536780.9106116641 635112.744816092 456622.2044426294 556006.0965745728 806126.1496211882 635581.6091124306 737493.6984592286 949037.7450954026 612242.436499553 0.8148073817632511 0.8767456788534062 1.0373549870984085 0.7458192657361848 0.9081469421712959 1.316678004599207 1.0381208018612977 1.2045778836824668 1.5501012156580483 1.0 19.223743520617674 2.794050435820597 7.055717053690378 1.2162710658999818 0.8767479943344838 0.5461760154055394 0.15739675581824666 0.20246099818220706 22.067935354475203 0.047224579958896694 0.04995577510860707 622.372558820802 -2.794050435820597 -0.339523071565498 LEIYVVTAEGLRPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEIYVVTAEGLRPVK 15 1 Q16531;F5GY55;Q16531-2;F5GZY8;F5GYG8;F5H198 Q16531 DDB1 DNA damage-binding protein 1 0 ; 192.4 1.2364e-07 1042590000.0 667370.0 686980.0 779340.0 641370.0 705850.0 844910.0 857050.0 779810.0 907290.0 807250.0 False True 663776.9540717774 709845.7140118207 889064.2978552858 722567.376238853 795735.8135992748 786503.3604042056 815591.2172510573 838003.381994945 683700.5365631307 755730.6138785039 0.878324818238064 0.9392840530421335 1.1764301743613332 0.9561176469093225 1.052935793503798 1.0407192006788928 1.0792089168722983 1.108865204883268 0.9046881574034616 1.0 19.52751254052259 4.4621357141379905 24.914271337261603 1.047292475778092 0.8935645784002663 0.3524351550191104 0.07258038987974748 175.84398057899563 292350.38637674274 0.01661683269294149 0.04554402751123734 28982.491297887456 -4.4621357141379905 -0.15372789737782566 LEKAWAYCEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKAWAYCEGR 11 1 A6NHR8 A6NHR8 FAM47DP Putative protein FAM47D 0 56.359 0.07709099999999999 70993000.0 72469.0 78513.0 63405.0 56279.0 55957.0 66515.0 68035.0 36112.0 98255.0 57479.0 False True 72078.83495606284 81126.2577428892 72331.87287386031 63403.915629584124 63082.79226687619 61916.97460946809 64743.88713106081 38806.860813020416 74041.3717995465 53810.64100975229 1.3394903610793216 1.507624815846115 1.3441927380265057 1.178278393265994 1.1723107378602584 1.1506455497946337 1.2031800015042944 0.7211744756206735 1.3759615275002526 1.0 15.715603872294238 3.4246259110197452 0.7454901967314975 1.0243482862792408 1.4605103545761606 0.38344183600861337 0.1644823428774026 0.7366593143946966 0.8397068590216661 0.08655692034778023 0.2016198872877941 2658.4341732998946 -3.4246259110197452 0.43616206829691984 LEKEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKEEAK 7 1 P10644;P10644-2;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EMU2;K7EMZ6;K7EQK3 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 0 58.981 0.096935 655370000.0 402510.0 301890.0 272270.0 252930.0 256810.0 284500.0 327720.0 317020.0 496090.0 321420.0 False True 400342.930883065 311938.2261536412 310603.2493867359 284950.9120665025 289513.2312678748 264833.18464096374 311866.9315880244 340677.64219494193 373835.26676542644 300906.70041849336 1.3304553548534421 1.03666095078576 1.032224436859521 0.946974300240573 0.9621362065558102 0.8801172731369574 1.036424018322915 1.1321703429040835 1.2423627198912683 1.0 18.19895670657468 -1.070938712628557 7.6585144168448425 0.9999999966626058 1.0567153295271658 0.01811387324352942 0.12987721541163527 8.958886492523435e-09 1.2527779843232909e-09 0.1287740921654764 0.03035234211621491 0.08493003193211222 1.070938712628557 0.0567153328645601 LEKEISK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKEISK 7 1 A0A087X0P0;Q02224-3;Q02224 A0A087X0P0 CENPE Kinesin-like protein;Centromere-associated protein E 0 91.921 0.014637 1089400000.0 1326700.0 1189900.0 1103800.0 921470.0 1249500.0 2087900.0 1050000.0 1181200.0 1761500.0 1388200.0 False True 1319557.194610228 1229505.1021902594 1259205.4455984093 1038128.0075195531 1408616.418633268 1943568.3873879337 999207.4886104782 1269347.142012067 1327401.927890704 1299603.887502186 1.0153533759785776 0.9460614222640906 0.9689148037396058 0.7988034027158963 1.083881351986875 1.495508289932431 0.7688554168077598 0.9767184864703106 1.0213896254511405 1.0 20.309640533641094 3.186445112273872 24.99995807611943 1.0513476939566826 0.9358819266195247 0.10674746784581968 0.17707166415463077 268.3993830946002 128750.76801225776 0.05370998699980323 0.06419578163859332 1536.1906316679826 -3.186445112273872 -0.11546576733715785 LEKHELIEFR ddPTM_BT-474_Trastuzumab_2h_R1 6 LEKHELIEFR 10 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 181.68 1.1181e-06 7475930000.0 3308510.0 3935110.0 3812210.0 3626640.0 3319570.0 3975870.0 4380690.0 3563890.0 5290030.0 4177830.0 False True 3290697.349770014 4066087.7575257723 4348936.031676671 4085772.25215222 3742297.5628670985 3701027.4650912704 4168779.2888390794 3829845.568866727 3986372.989270315 3911197.3125797827 0.8413529379318136 1.0396017977532883 1.1119193648678798 1.0446346542044664 0.9568163566769072 0.9462645756038611 1.065857576510094 0.9792002966837291 1.0192206300737479 1.0 21.89917888849396 -0.9158959258843542 4.179927977960276 0.9999998711182043 1.0044619007387996 0.0 0.07161195925663692 2553656242714.9756 669118473681.0566 3415959.039124771 0.01699711368899254 0.12136796612146891 0.9158959258843542 0.004462029620595276 LEKPAK ddPTM_BT-474_Trastuzumab_2h_R1 3 LEKPAK 6 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;; 81.297 0.056772 40840800000.0 14766500.0 12325090.0 11040800.0 8886020.0 9312240.0 13136500.0 15139500.0 12719730.0 18097500.0 12846300.0 False True 14686998.804712396 12735323.169975767 12595248.67164606 10010989.220895834 10498098.566029187 12228404.67499479 14407144.546493655 13668940.842080208 13637613.619075786 12026438.135729233 1.221225988855248 1.058943888975782 1.0472966750003023 0.8324151430301113 0.8729183526783781 1.0167935457685962 1.197956068446534 1.1365743279775646 1.1339694650371939 1.0 23.51970608770596 2.350672892731873 6.98783660411393 1.131341487567409 0.9966784913300598 0.18327994001457126 0.10998517028481171 0.33347410672132677 19.24846989140736 0.040911181402444326 0.03409696107931291 224.21924854679847 -2.350672892731873 -0.13466299623734923 LEKPAKYDDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKPAKYDDIK 11 2 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 97.86 0.023646 505400000.0 982230.0 813070.0 756030.0 625610.0 668550.0 1144400.0 1054300.0 960090.0 1848800.0 1122500.0 False True 976941.7828160122 840132.5434388053 862472.4524694363 704812.1618547615 753685.8796936943 1065290.3216278343 1003299.4811828838 1031736.7910382352 1393188.0126507694 1050861.0889793993 0.9296583469132177 0.7994705982069862 0.8207292681348333 0.6706996474094193 0.7172079046391157 1.0137308658582542 0.9547403474205068 0.9818013073833215 1.3257584920228034 1.0 20.003140544537118 2.1117557535984646 1.1735228240462994 1.1192362987700437 0.7911518013356371 0.5639040887617368 0.11675456852477738 0.36469957636785816 0.9420879104899347 0.08412583172671771 0.04268833411966101 129.34681927710153 -2.1117557535984646 -0.3280844974344066 LEKPAKYDDIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKPAKYDDIKK 12 3 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 99.566 0.004554 2240400000.0 3845700.0 3069600.0 2781300.0 2524900.0 2492900.0 4362400.0 4615000.0 3899300.0 7079400.0 4454600.0 False True 3824995.1784974397 3171769.780387613 3172882.8645070256 2844552.081116168 2810356.0384240686 4060837.555985028 4391754.818987956 4190285.566244204 5334776.729099885 4170303.61422507 0.9171982503744405 0.7605608784858209 0.7608277856998702 0.6820971191194062 0.6738972262925494 0.9737510578686288 1.053101938191624 1.004791486152465 1.2792298169617078 1.0 21.991720990594015 2.551863777943222 3.6840044715796543 1.071619228000695 0.7556793921247703 0.7199050001942364 0.0961814097439586 0.13143291230675822 3.4274070351014236 0.03346409507639164 0.030488517555669933 356.3393454709084 -2.551863777943222 -0.3159398358759248 LEKPETQS(ph)SPITVQSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKPETQSSPITVQSSK 17 1 Q96CB8;A0A087WXN4;E9PGI3 Q96CB8 INTS12 Integrator complex subunit 12 1 LEKPETQS(0.519)S(0.479)PIT(0.001)VQSSK 168.75 1.2468e-09 507710000.0 996900.0 768520.0 699520.0 611790.0 690020.0 922670.0 882110.0 951870.0 1312700.0 931350.0 True False 991532.801166003 794099.7236198495 798006.3356631626 689242.5512717585 777889.9569310347 858887.9946315557 839438.9693125613 1022903.3728979209 989202.674278812 871910.4456311498 1.1371956903765066 0.9107583555155422 0.9152388753474674 0.7904969538159811 0.8921672642285453 0.9850644626809494 0.9627582437149456 1.1731748117290552 1.1345232520557291 1.0 19.733820437101073 1.8634222976216535 4.917529097173665 1.1166864144873514 0.9308073376114365 0.3869114599519906 0.09205293340209926 0.20837527503515468 7.109236062571847 0.04343520005502202 0.025204548119083254 73.01671623510899 -1.8634222976216535 -0.18587907687591487 LEKPETQSS(ph)PITVQSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEKPETQSSPITVQSSK 17 1 Q96CB8;A0A087WXN4;E9PGI3 Q96CB8 INTS12 Integrator complex subunit 12 1 LEKPETQS(0.087)S(0.912)PITVQSSK 229.97 5.692300000000001e-16 561100000.0 1168000.0 849110.0 919510.0 853040.0 877250.0 1152800.0 1073800.0 1197900.0 1697900.0 1330900.0 True False 1161711.6177769997 877372.1130521656 1048969.0154758042 961034.776535839 988962.5876318815 1073109.6493993073 1021856.1916856491 1287293.3808129472 1279475.2956943645 1245960.8225591825 0.9323821397456652 0.7041731145687695 0.8418956651632429 0.7713202206164795 0.7937348989838774 0.8612707799232068 0.8201350902725607 1.0331732406873502 1.0268984967491543 1.0 20.248827274934737 1.7489608068167009 5.161939647015282 1.0227481157000755 0.8125522192756754 0.7258605445418245 0.05680749217336677 0.08034024997463188 5.087899914723712 0.026871521853120757 0.013984709806586405 56.09973461836166 -1.7489608068167009 -0.21019589642440006 LELASLGLGAPTPPSGLS(ph)QGPTSWLRPPPTSPGPQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LELASLGLGAPTPPSGLSQGPTSWLRPPPTSPGPQAR 37 1 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 LELASLGLGAPTPPS(0.04)GLS(0.217)QGPT(0.217)S(0.217)WLRPPPT(0.154)S(0.154)PGPQAR 92.343 0.00030611 175380000.0 70279.0 65132.0 58220.0 81252.0 55888.0 81415.0 76449.0 76158.0 100220.0 71162.0 True False 69900.62567273101 67299.87924687465 66416.86994268832 91538.49486904484 63005.00552587123 75786.97268029545 72750.86980645945 81841.29668248806 75522.12387919733 66620.38023514659 1.0492378672413203 1.0101995666991044 0.9969452246934055 1.374031408195901 0.9457317010723393 1.137594417996325 1.0920212335875956 1.228472374273713 1.1336189258096503 1.0 16.02367596775257 LELCATRPEGTDSYIFEFPHPDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LELCATRPEGTDSYIFEFPHPDAR 24 1 Q96PE2;A0A2R8Y4D7 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 0 ; 118.22 0.00033893 256044000.0 107538.0 127594.0 121513.0 126285.0 115578.0 128574.0 117060.0 114795.0 145080.0 133137.0 False True 106959.02735659512 131840.88915779817 138620.97419007003 142272.66805170712 130296.17321552314 119685.98201064067 111397.360587374 123361.58581719868 109326.97797240026 124640.0826756798 0.8581431034100664 1.0577727993077095 1.1121701078357695 1.1414680173304141 1.0453793869389576 0.9602527488855253 0.8937523001909099 0.9897424902885548 0.8771414108964845 1.0 16.927408569911112 2.711622157118426 4.407340945698544 0.9418601299404894 1.053712576592797 0.28110683389778646 0.07852431465950155 0.2632780230376814 12.593473153104847 0.02610225247319657 0.025437986336680537 514.7805826719905 -2.711622157118426 0.11185244665230765 LELEDEWQFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LELEDEWQFR 10 0 Q4ZG55;Q4ZG55-4;Q9C091-3;Q9C091 Q4ZG55 GREB1;GREB1L Protein GREB1;GREB1-like protein 0 ;;; 152.28 4.2608e-05 182998000.0 227707.0 271312.0 240629.0 250578.0 263733.0 302377.0 284513.0 262252.0 325238.0 302876.0 False True 226481.0508126259 280342.45590843237 274507.4716152379 282301.14910765865 297317.83428203943 281474.3897088951 270750.0192447933 281822.5759286731 245087.4528659193 283546.19437481085 0.798744808802645 0.9887011762811969 0.9681225742440226 0.9956090214157259 1.0485692990434718 0.9926932376204737 0.9548709332592815 0.9939212076186099 0.8643651642241612 1.0 18.113224267686938 4.740117269628218 24.655360698020246 0.9806665143728253 0.7987447364929167 0.592982262576657 0.04465590951963421 75.8263602535553 1200856.5314868654 0.01041125267597185 0.06621039211084519 54968.92827326825 -4.740117269628218 -0.1819217778799086 LELGLHECSLPVS(ph)PLGSIATR ddPTM_BT-474_Trastuzumab_2h_R1 2 LELGLHECSLPVSPLGSIATR 21 0 Q96MT8-3;Q96MT8-2 Q96MT8-3 1 LELGLHECSLPVS(0.999)PLGS(0.001)IATR;LELGLHECSLPVS(0.996)PLGS(0.004)IATR 104.89 0.00026004 246970000.0 231470.0 284060.0 259340.0 303160.0 275340.0 268790.0 281940.0 195070.0 310680.0 240270.0 True False 230223.7912387348 293514.7653821041 295852.8177763105 341540.02491630457 310402.91693196027 250209.17996360143 268301.48508460756 209627.1139453892 234117.07689871354 224935.7628945039 1.0235090599919898 1.304882610062163 1.3152769215941313 1.5183891637386657 1.3799624965708142 1.1123583762042806 1.1927915847265356 0.9319421298235508 1.040817493341491 1.0 17.779153530166813 2.2176000320438547 1.621367342779187 0.993045864969749 1.3132458850210993 0.4994660406212206 0.12869232248295798 0.310856434920139 1.6109747381685446 0.07385006171095079 0.04418458664074505 165.04411074279295 -2.2176000320438547 0.3202000200513503 LELKAS(ph)PNVEAPQPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LELKASPNVEAPQPHR 16 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 LELKAS(1)PNVEAPQPHR;LELKAS(1)PNVEAPQPHR 136.49 1.0364e-05 543990000.0 486365.0 480735.0 478687.0 428020.0 443341.0 562250.0 556570.0 468200.0 679850.0 438207.0 True False 483746.4648802317 496735.9738645551 546081.9687780086 482207.2881141202 499797.8484620182 523382.9808941365 529646.5827961278 503139.46147142677 512310.0770232723 410240.25409211265 1.179178444959754 1.2108416200254724 1.3311272195521675 1.1754265538404443 1.2183052332787334 1.2757962576159567 1.2910643885209871 1.2264507357643533 1.2488049914971082 1.0 18.646109535074057 -0.8200523050227211 5.191287383852834 0.9999998192703263 1.2412557400514594 0.7045795943529372 0.046546565690110155 9.490051847363958e-08 2.1558652896482032e-08 0.04392180101965878 0.010352459913572963 0.15133789709915726 0.8200523050227211 0.24125592078113312 LELLAAYEEVIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LELLAAYEEVIR 12 0 Q16643;Q16643-3;D6R9W4;D6RFI1 Q16643 DBN1 Drebrin 0 ;;; 164.65 0.00013195 237852000.0 353857.0 389538.0 351412.0 367319.0 385684.0 381989.0 413506.0 336594.0 450178.0 403523.0 False True 351951.8732292089 402503.5368493066 400887.7550721401 413821.5477379342 434798.5712718314 355582.99953538453 393503.13503368007 361712.35346969985 339237.663976146 377769.81666657893 0.9316569447893265 1.0654729919954344 1.0611958324504394 1.0954330639474426 1.15096164936752 0.9412689522763631 1.0416478968752219 0.9574940546109022 0.8980009757517459 1.0 18.527147911247777 2.712673472149727 24.997190679523058 0.9706356973314522 1.0631257565446577 0.3616137076869276 0.06186121796711623 877.0156515940816 846864.4758748147 0.020296278155014093 0.019141873150100686 516.0282433367347 -2.712673472149727 0.09249005921320552 LELMDIIAENVLSEDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LELMDIIAENVLSEDRR 17 1 A0A2R8YF87;Q96AX1;H3BMM5;F5H6Y0 A0A2R8YF87 VPS33A Vacuolar protein sorting-associated protein 33A 0 ; 116.3 0.00043773 182102000.0 163452.0 176234.0 157881.0 168902.0 179332.0 174939.0 178576.0 172773.0 209560.0 179227.0 False True 162571.99259322445 182099.84215429713 180109.27247374743 190284.9758820878 202168.86721595973 162845.8786921106 169937.59665343293 185666.19858351714 157916.7459601336 167788.57941604548 0.9689097622676328 1.0852934257388622 1.0734298669228959 1.1340758503608321 1.2049024309018406 0.9705420908792662 1.0128078874311153 1.1065484863730959 0.941165045378721 1.0 17.356284996051503 2.6976150098336076 24.999031332395067 1.0210429882295193 1.094035355617474 0.27628223355951853 0.06841405935292028 837.1725769110561 511128.41514116403 0.023004130027570326 0.021688862279298542 498.44243598450447 -2.6976150098336076 0.07299236738795467 LELQGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LELQGPR 7 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ;; 157.9 0.0033611 601970000.0 772750.0 991730.0 1084680.0 931110.0 769050.0 907500.0 1015420.0 766130.0 1180450.0 918750.0 False True 768589.599860596 1024739.1335365545 1237393.5157924264 1048988.4305311397 866983.9589835256 844766.661025218 966300.2553189067 823302.5109293136 889543.9147196021 860114.5884185524 0.8935897730484509 1.19139838730173 1.4386379820246473 1.2195914877572995 1.0079865760416917 0.9821559503815022 1.1234552562299778 0.9572009613778052 1.0342155878964452 1.0 19.7141693495197 3.237399508517534 24.99079164555974 1.0170629014896575 1.2042635402360609 0.2831687894013266 0.1298611003127031 37.99013639828208 817676.2321420666 0.038046974362067894 0.047964297087442494 1727.4262247783738 -3.237399508517534 0.18720063874640336 LELSPPPPLLPVPVVSGS(ph)PVGSSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LELSPPPPLLPVPVVSGSPVGSSGR 25 0 P78383-2 P78383-2 1 LELSPPPPLLPVPVVS(0.062)GS(0.928)PVGS(0.004)S(0.006)GR 99.987 0.004187300000000001 60462000.0 46674.0 64867.0 61548.0 46199.0 70877.0 58726.0 57797.0 49830.0 56160.0 56780.0 True False 46422.71236996892 67026.05888207047 70213.4234151937 52047.788663109815 79902.76582910783 54666.409846134324 55001.13830401887 53548.56763161297 42320.120505445266 53156.25178819633 0.8733255413670338 1.260925227556282 1.320887403704883 0.9791470788891731 1.5031677957182588 1.0284097920213655 1.034706858624524 1.007380427141098 0.7961456852539537 1.0 15.697951758858277 2.4974507089466065 24.67502289255235 0.9758511937523142 1.1952448264157753 0.2790093984693388 0.1739488736362968 847.7114566163715 1028915.9289635983 0.05432908550690985 0.05062677643241334 314.3769592080383 -2.4974507089466065 0.21939363266346112 LELSVHLQPITR ddPTM_BT-474_Trastuzumab_2h_R1 1 LELSVHLQPITR 12 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 162.13 6.3495e-05 550040000.0 169750.0 248250.0 279140.0 290640.0 261170.0 269010.0 278230.0 264730.0 284610.0 274150.0 False True 168836.08486099786 256512.85117970593 318440.485671625 327434.9942000094 294428.4514241302 250413.97188142568 264770.9519581839 284485.49687170185 214471.67907861088 256653.51228837649 0.6578366427001913 0.9994519416180344 1.2407408058917369 1.2757861417150709 1.1471826307730777 0.9756888563444243 1.0316280092854784 1.1084418613062006 0.8356467720481845 1.0 17.969462478318047 2.7220689762570958 24.130051273356568 1.009597957426837 1.082165195785312 0.03330226500473943 0.17190554857006057 2242.6325665366594 3281343.621318648 0.05910354841853179 0.055894585916430775 527.3136046709113 -2.7220689762570958 0.072567238358475 LELTELEAIREDFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LELTELEAIREDFLR 15 1 Q9UPU7 Q9UPU7 TBC1D2B TBC1 domain family member 2B 0 ; 143.38 4.0333e-06 38565000.0 37069.0 50889.0 49091.0 44067.0 40967.0 48591.0 49402.0 36671.0 54444.0 46806.0 False True 36869.424622753075 52582.809601949884 56002.58609337875 49645.87768170872 46183.904619567154 45232.01854091059 47012.236526033186 39407.5762315649 41027.00571222332 43818.80100736731 0.8414065144446599 1.2000056686423044 1.278049257531327 1.132981198489701 1.0539746309307323 1.032251396684854 1.072878203995791 0.8993303177085848 0.936287729673968 1.0 15.419262388651875 2.268894350718284 1.1907954613305578 0.940174550021271 1.121632265033663 0.2340600070099368 0.11194512851210967 0.6144496143260315 1.6912840874540158 0.07338084452212225 0.042878612994424616 185.7352568543022 -2.268894350718284 0.18145771501239194 LELVHHGPMAVAFEVYDDFLHYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LELVHHGPMAVAFEVYDDFLHYK 23 0 P53634 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain 0 61.222 0.018848 27183000.0 42683.0 44233.0 42993.0 37817.0 37018.0 49937.0 48146.0 33132.0 51483.0 42364.0 False True 42453.19947052711 45705.26866558684 49046.040698144934 42604.62832253562 41732.022877123956 46484.972729053734 45816.994044419116 35604.47808088706 38795.704486856106 39660.29325035485 1.0704207153119645 1.1524188279968883 1.2366535060278736 1.0742388628746316 1.0522368711116519 1.1720783917460778 1.1552358868150623 0.897736127570577 0.9782001419394193 1.0 15.275407724520864 1.7514324967898816 12.679599472601181 0.9546226299464409 1.1318295123511672 0.6532779192949312 0.05732903059702832 0.08783704317585159 77.2714925638818 0.027411434360830506 0.015061669120143778 56.41992399779041 -1.7514324967898816 0.17720688240472637 LENEGS(ph)DEDIETDVLYSPQMALK ddPTM_BT-474_Trastuzumab_2h_R1 10 LENEGSDEDIETDVLYSPQMALK 23 0 O60502;O60502-3 O60502 MGEA5 Protein O-GlcNAcase 1 LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(0.999)DEDIET(0.001)DVLYSPQMALK;LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(0.983)DEDIET(0.017)DVLYSPQMALK;LENEGS(0.999)DEDIET(0.001)DVLYSPQMALK;LENEGS(0.991)DEDIET(0.009)DVLYSPQMALK;LENEGS(0.994)DEDIET(0.006)DVLYSPQMALK;LENEGS(0.999)DEDIET(0.001)DVLYSPQMALK 273.36 7.3993e-52 666602000.0 1491883.0 1408508.0 1279896.0 1148218.0 976964.0 1572654.0 1528244.0 1530856.0 1879351.0 1655228.0 True False 1483850.8676917832 1455389.3373189326 1460094.2317445367 1293582.2810705558 1101374.5744807 1463940.1306093128 1454316.9992609834 1645096.2482492572 1416210.1280631945 1549589.9319280128 0.9575764769235198 0.9392093400530327 0.942245559073732 0.8347900656924571 0.7107522782561969 0.9447274407545139 0.9385173259686258 1.061633283976242 0.913925741825861 1.0 20.56345505485919 2.2417008821559894 2.854582874479043 0.9958120413332381 0.8794386599619853 0.2688842112838147 0.07675703431386813 0.3393020133717886 5.701342206510815 0.03377979081735043 0.024566454056665292 174.462014187029 -2.2417008821559894 -0.11637338137125275 LENGELEHIRPK ddPTM_BT-474_Trastuzumab_2h_R1 6 LENGELEHIRPK 12 1 M0R1K3;Q15102;M0R389;M0QZT2;M0QXS6;M0R323 M0R1K3 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 ;;;;; 238.13 2.3906e-16 9882950000.0 6350170.0 6001410.0 5520740.0 5342030.0 5198210.0 6780410.0 6834960.0 6324780.0 8436710.0 6945300.0 False True 6315981.390290215 6201163.30392105 6298012.204867686 6018330.4502693275 5860171.231295433 6311696.216068318 6504326.872717217 6796767.200182083 6357595.866622065 6502045.007829511 0.9713838311923025 0.9537250659529194 0.96862021060818 0.9256057814152758 0.9012812467829493 0.9707247809678368 1.0003509457232238 1.0453276149269468 0.9777840447069337 1.0 22.63246211187162 2.3141817763566417 3.2844463450950414 1.014152106314198 0.9444921827048203 0.5638098707846083 0.025145979737239192 0.16554394881774018 3.598457136482502 0.009991618559361901 0.007852672446906996 206.1492581838305 -2.3141817763566417 -0.06965992360937778 LENGGFPYEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LENGGFPYEK 10 0 Q9BRT3;J3KTI2 Q9BRT3 MIEN1 Migration and invasion enhancer 1 0 ;; 145.55 0.00030158 316000000.0 359749.0 398863.0 322369.0 315847.0 345654.0 388445.0 376517.0 345518.0 453975.0 383340.0 False True 357812.15135587164 412138.9138372244 367755.7531184213 355833.1978154777 389670.988048231 361592.71145117434 358303.43427538214 371302.3076648535 342098.9442033393 358874.9130061143 0.997038629305848 1.1484194043683478 1.024746338600034 0.9915243025343908 1.0858128387525154 1.007573107917448 0.9984075823914657 1.0346287639741691 0.9532539940943456 1.0 18.453121550149554 2.6868866116357744 0.524590829041363 0.9890491740112077 1.065080500861883 0.20525924825969455 0.046920895916289354 1.5486980170892861 0.8903350463173252 0.04016670114395974 0.04801180868925993 486.2802279828141 -2.6868866116357744 0.07603132685067537 LENGSLLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LENGSLLSK 9 0 A0A3B3ISJ8 A0A3B3ISJ8 0 63.816 0.073588 155460000.0 94090.0 306340.0 269300.0 327440.0 311350.0 171620.0 185280.0 168450.0 65281.0 193390.0 False True 93583.42989438184 316536.34171355946 307215.09920243826 368893.87042682 350998.57698396844 159756.3133500253 176317.29856166616 181020.59437176798 49193.3722705836 181047.68463049125 0.5168993466300366 1.7483589605666232 1.6968739469352951 2.0375508871031016 1.9387079028397296 0.8823990965478486 0.9738721537451333 0.9998503694826114 0.2717150035416618 1.0 17.46601020113509 2.720275593086224 22.422529836450995 0.8524409934764935 1.6276641864927293 0.429372350380117 0.43752714407256044 209.64986831288746 257087.85499317496 0.14260134877916844 0.13480094605297951 525.1405964369274 -2.720275593086224 0.7752231930162358 LENLGIPEEELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LENLGIPEEELLR 13 0 Q01658 Q01658 DR1 Protein Dr1 0 ; 174.73 4.5302e-05 85179000.0 83567.0 94808.0 79320.0 87721.0 85091.0 91228.0 86328.0 74227.0 97969.0 86116.0 False True 83117.08455716663 97963.62696735373 90487.56653820045 98826.46960576328 95926.83447612917 84921.62308761274 82151.98483501471 79766.19565706876 73825.85266734273 80620.00315238311 1.0309734719318193 1.2151280468469932 1.122395968741979 1.225830634352214 1.18986393854158 1.053356732411669 1.019002500902114 0.9894094832308487 0.9157262438678092 1.0 16.298850219150342 2.418185937985254 2.059306394314873 0.9759029919736456 1.1615789783822792 0.676696001158434 0.0573336408606317 0.18074558771400145 1.564709989962951 0.023528768668579097 0.01833829694482888 261.93041919359047 -2.418185937985254 0.1856759864086336 LENLNEAIEEDIVQSVLRPTNCR ddPTM_BT-474_Trastuzumab_2h_R1 2 LENLNEAIEEDIVQSVLRPTNCR 23 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 0 ; 103.95 0.0015362 51562000.0 10155.5 13554.900000000001 12034.6 13672.8 12018.5 12031.900000000001 12779.5 12672.7 16664.9 13747.4 False True 10100.823916382125 14006.066652389927 13728.967073381602 15403.77507809624 13548.984735769467 11200.163073046075 12161.306762569155 13618.40122466671 12558.058693219282 12870.029162258717 0.784833024776877 1.0882700012415383 1.066739391208352 1.1968718084390761 1.0527547812791118 0.8702515691176897 0.9449323392546859 1.05814843563856 0.9757599252413284 1.0 13.651727702121146 LENNDNKPVTNSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LENNDNKPVTNSR 13 1 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739 A0A024R7W5 YTHDF3 YTH domain-containing family protein 3 0 ;;; 246.5 3.1518e-17 3255420000.0 2569660.0 2297740.0 2108370.0 1925170.0 2047990.0 2705090.0 2494910.0 2352500.0 3278550.0 2654410.0 False True 2555825.2360760677 2374218.886886836 2405210.169719437 2168896.3246078743 2308789.387112246 2518093.4953969205 2374221.671818255 2528055.4957529516 2470595.282819226 2485003.2812452656 1.0284997429843683 0.9554188136512584 0.9678901383639851 0.8727941491976677 0.9290890698362713 1.0133159639672882 0.9554199343465266 1.017324811935907 0.994202020361591 1.0 21.244816326074773 2.738111452274662 24.999920419860715 0.9954016738856103 0.9476210465155667 0.2484116345419588 0.03921501443843317 59.087017827635705 3288672.8192617507 0.012814156315192653 0.012785201925218976 547.1563607101427 -2.738111452274662 -0.04778062737004363 LENNENKPVTNSR ddPTM_BT-474_Trastuzumab_2h_R1 3 LENNENKPVTNSR 13 1 Q9Y5A9;Q9Y5A9-2 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 0 ;; 202.25 8.700100000000001e-08 674890000.0 356150.0 341200.0 318500.0 291589.0 285407.0 334821.0 318251.0 300143.0 419040.0 377050.0 False True 354232.527971985 352556.6357402443 363342.03154837206 328504.13750270585 321751.8897101763 311675.61235385615 302855.9832931172 322541.1947552723 315773.20684832253 352986.3461912542 1.0035303965554963 0.998782642853905 1.0293373538916062 0.9306426184675045 0.9115136978580058 0.8829678986647965 0.8579821473576899 0.9137497759772096 0.8945762640836852 1.0 18.42925285435498 3.586007517645942 3.506432409279391 0.9024131483313494 1.0092448932989935 0.6065496912069013 0.03584174949326404 0.1439967150815028 3.252596146709583 0.009332476234436721 0.014961905110851267 3854.850303614044 -3.586007517645942 0.10683174496764403 LENVSLSQQLTETQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LENVSLSQQLTETQHR 16 0 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 ; 218.98 1.2836000000000001e-14 733690000.0 202969.0 253219.0 249039.0 253937.0 209906.0 258977.0 276336.0 229161.0 270418.0 246551.0 False True 201876.23745597585 261647.24134088226 284101.5265142074 286085.3981632527 236636.28488966412 241074.52955628413 262968.57197396684 246262.15747597962 203777.10731555359 230815.90409706905 0.8746201361023949 1.133575445610746 1.2308576725923064 1.2394527113822287 1.0252165500265844 1.0444450545959816 1.139300053879199 1.0669202299526754 0.8828555732011241 1.0 17.816383109041794 1.38306935610359 5.271738920698144 0.9439100328665202 1.1046734162127565 0.2624900096865792 0.10298404372242113 0.27202290883337665 10.902324241948927 0.07361278261582296 0.026351601556891317 24.158466103100093 -1.38306935610359 0.1607633833462363 LENVSQLSLDKS(ph)PTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LENVSQLSLDKSPTEK 16 1 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 LENVSQLSLDKS(1)PTEK;LENVSQLSLDKS(1)PTEK 223.07 5.485100000000001e-15 1553360000.0 1913380.0 1315600.0 1144010.0 1033960.0 1025810.0 1739650.0 1705970.0 1597320.0 2481900.0 1488300.0 True False 1903078.5746765016 1359388.9507030055 1305076.6640868222 1164859.2299856928 1156440.8230477727 1619392.090195612 1623445.7136617312 1716520.1294266102 1870269.0007561375 1393315.4198022648 1.3658634273541457 0.9756505464469244 0.9366699352771355 0.8360341193604289 0.8299921228259223 1.1622580696231952 1.165167406165738 1.2319680849223744 1.342315583517737 1.0 20.410090462635083 2.5748768835914015 6.817646959543141 1.2008068345248955 0.9770391783738066 0.25999666556873857 0.1603100155525117 0.3187971847416527 19.100738687153644 0.05306646018269444 0.04985180542437217 375.73087474389894 -2.5748768835914015 -0.22376765615108885 LEPAS(ph)PPEDTSAEVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEPASPPEDTSAEVSR 16 0 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 LEPAS(1)PPEDTSAEVSR;LEPAS(1)PPEDTSAEVSR;LEPAS(1)PPEDTSAEVSR;LEPAS(1)PPEDTSAEVSR 279.93 2.0384e-35 1964770000.0 1022970.0 1212780.0 1016570.0 1060640.0 1058810.0 1144800.0 1078540.0 1011530.0 1159620.0 1117280.0 True False 1017462.4431826518 1253146.6491590082 1159694.2198151608 1194916.9152501298 1193643.1774414508 1065662.6705693332 1026366.8997770906 1087015.5050452643 873847.1891119026 1045974.2338484671 0.9727414024713481 1.1980664614923533 1.1087215939806492 1.1423961284912878 1.141178375923911 1.018823060916545 0.9812544769872247 1.0392373634728969 0.8354385422064795 1.0 19.996415882518125 2.571903683685898 3.313982788233415 0.9764317108939516 1.1186893306949723 0.4768890266267112 0.07310177669792801 0.22412639393089298 4.677337474692159 0.02442465495675681 0.02232544172186035 373.1673888571596 -2.571903683685898 0.1422576198010207 LEPGS(ph)DVEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 LEPGSDVEVK 10 0 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 LEPGS(1)DVEVK;LEPGS(1)DVEVK;LEPGS(1)DVEVK 193.49 5.9495e-07 1002300000.0 1524140.0 1146270.0 966930.0 881660.0 936250.0 1440090.0 1310740.0 1226780.0 1811050.0 1336140.0 True False 1515934.1995878732 1184422.9040151532 1103065.339293774 993278.0656013641 1055475.887911482 1340539.9679072218 1247334.4986869502 1318328.5530626148 1364740.994326687 1250866.4012729947 1.2119073612058981 0.9468820193825475 0.8818410488691638 0.7940720644431049 0.8437958576849889 1.0716891640409936 0.9971764350034104 1.053932339793414 1.0910365750793236 1.0 20.254496280080133 2.721399416058865 24.545487580117523 1.0428943969843556 0.9254605615677579 0.19581382267469716 0.10749143494048172 1059.5960995752557 1515526.628480669 0.03643119986875672 0.034429546424764125 526.5012614564519 -2.721399416058865 -0.11743383541659769 LEPHKPQQIPIDSTVSFGASTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEPHKPQQIPIDSTVSFGASTR 22 1 Q12972 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 172.42 2.9509e-12 512160000.0 149300.0 158970.0 138670.0 132320.0 150900.0 168970.0 171370.0 137840.0 203740.0 162270.0 False True 148496.18538878928 164261.22035060587 158193.53065875283 149071.69843292478 170116.22054562648 157289.50161259595 163080.17840302648 148126.32073733752 153531.00697612925 151913.7896736635 0.9775030015891526 1.0812791959404524 1.0413375309679211 0.9812914203059248 1.1198207938269782 1.0353865962430429 1.0735047736834837 0.9750683006166714 1.0106456254296585 1.0 17.21289330800854 1.72587662309333 11.468381536217958 0.9951658281524172 1.045740009985817 0.2272012085590719 0.04138857097784551 0.13354130724432411 66.12497513500173 0.018536987559426087 0.010118831621355899 53.19571163221768 -1.72587662309333 0.05057418183339979 LEPNS(ph)PMHGGTLLEDVVGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEPNSPMHGGTLLEDVVGGR 20 0 Q5VY60;Q7Z4H7-3;Q7Z4H7 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR 169.26 7.1102e-12 103580000.0 49277.0 55969.0 53002.0 54766.0 48983.0 52943.0 47368.0 43306.0 52805.0 50643.0 True False 49011.69810718938 57831.89433102506 60464.220898357344 61699.36998471553 55220.69470501274 49283.17502441661 45076.62887666777 46537.71362341222 39791.91530074856 47410.920382346325 1.0337639031668981 1.219801131567128 1.2753226558510657 1.3013746513912767 1.1647252206808967 1.0394899450795607 0.9507646869781557 0.9815821597241288 0.8392985198314197 1.0 15.532931779746391 2.6171240414145536 2.170215382418693 0.9449549387779458 1.214843611440417 0.7100638997680722 0.07772839733317648 0.17243678497073395 1.607128774069134 0.029950718845705018 0.02735342433617787 414.11793660236816 -2.6171240414145536 0.2698886726624713 LEPQELS(ph)PLSATVFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEPQELSPLSATVFPK 16 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q3T8J9-3 GON4L;YY1AP1 GON-4-like protein;YY1-associated protein 1 1 LEPQELS(1)PLSATVFPK 252.05 1.6875e-26 170530000.0 95276.0 96113.0 84246.0 81380.0 79392.0 99102.0 92634.0 96404.0 128300.0 100410.0 True False 94763.04460215881 99312.06310346452 96107.10452064096 91682.6996559207 89502.10060674863 92251.31200101506 88152.93952375521 103598.15600959299 96682.18413192003 94001.74783467404 1.0080987511936874 1.0564916652202043 1.0223969951034286 0.9753297334127023 0.9521323025201703 0.9813786884395217 0.9377797919118968 1.1020875504548775 1.028514749555085 1.0 16.52039996154157 -0.8532346001582992 5.375917168433003 0.9999999934968719 1.0095069064482776 0.0 0.04658763626605083 3.6257749429628436e-09 9.442267650177301e-10 0.04866429378867303 0.011470276098735918 0.14020561277125176 0.8532346001582992 0.00950691295140571 LEPQIASASEYAHR ddPTM_BT-474_Trastuzumab_2h_R1 6 LEPQIASASEYAHR 14 0 O60664-4;O60664;O60664-3;K7ER39;K7EL96 O60664-4 PLIN3 Perilipin-3 0 ;;;;; 225.09 2.9061e-12 3519490000.0 2862230.0 3566760.0 3235640.0 3533980.0 3299670.0 3651460.0 3662210.0 3238640.0 3668820.0 3706530.0 False True 2846820.071703651 3685477.4504480506 3691189.987312955 3981381.5056528626 3719863.415823641 3399043.164812272 3485054.911299221 3480323.7622806965 2764688.470669298 3469976.0820800113 0.8204148974989991 1.0621045688127226 1.0637508443863224 1.147380100460606 1.0720141372253607 0.9795580961972453 1.0043455138774822 1.0029820609583229 0.7967456850630676 1.0 21.72649428792498 1.4050327859210119 7.4559008613555084 0.8967627180097633 1.0268387007392206 0.21491385762303916 0.09232792919851304 0.32214610578971603 26.674197320429947 0.06037231890022947 0.02247269119252016 25.411645368493385 -1.4050327859210119 0.1300759827294573 LEPTAPALS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEPTAPALSPR 11 0 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 LEPTAPALS(1)PR;LEPT(0.001)APALS(0.999)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR 194.86 3.4192e-07 2172270000.0 1354820.0 1629080.0 1580480.0 1490480.0 1315870.0 1679780.0 1678900.0 1381520.0 1973140.0 1682500.0 True False 1347525.799654653 1683302.9430003455 1802997.8462215732 1679174.6151776423 1483438.2447274583 1563660.7623767927 1597685.1929791716 1484616.0376164152 1486886.0857214094 1575121.4095392784 0.8555059892486657 1.0686813935775974 1.1446722997365317 1.0660604350929364 0.9417929537008596 0.9927239595036437 1.014325107450919 0.9425407010692999 0.9439818903587389 1.0 20.587031604406288 3.242393793819361 24.996944645589082 0.9716662354770476 1.0441510082514163 0.140272985739487 0.07235080242057661 173.4739993769629 1131251.56214281 0.02072025422473293 0.027031245725855507 1747.4058842061984 -3.242393793819361 0.07248477277436871 LEPVS(ph)PPS(ph)PPHTDPELELVPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEPVSPPSPPHTDPELELVPPR 22 0 C9J0Q5;C9JE98;C9J330;H7C1Y3;H0YGK8;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 2 LEPVS(1)PPS(0.999)PPHT(0.001)DPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR 145.2 4.9957e-08 2619410000.0 1381580.0 1594050.0 1405340.0 1511560.0 1414200.0 1634040.0 1564410.0 1406540.0 1539780.0 1512470.0 True False 1374141.7267879674 1647106.990626428 1603199.6565657426 1702923.3410162632 1594289.9873798862 1521082.660916414 1488733.5116734472 1511503.1570654023 1160321.850994918 1415942.869709286 0.9704782277480581 1.1632580846744216 1.1322488292870907 1.2026780016667613 1.1259564361570729 1.074254260857795 1.0514078947119572 1.0674888015614192 0.8194693979659994 1.0 20.433331626235308 1.400133555043475 4.502697682764788 0.9111324235211548 1.1064230701689826 0.5164344011813026 0.07306096376489007 0.15824113301605086 5.151662212548965 0.05152502336182058 0.018277753873145366 25.126590102638495 -1.400133555043475 0.1952906466478278 LEPVSPPS(ph)PPHTDPELELVPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEPVSPPSPPHTDPELELVPPR 22 0 C9J0Q5;C9JE98;C9J330;H7C1Y3;H0YGK8;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 LEPVSPPS(1)PPHTDPELELVPPR;LEPVSPPS(1)PPHTDPELELVPPR;LEPVSPPS(1)PPHTDPELELVPPR;LEPVS(0.001)PPS(0.999)PPHTDPELELVPPR 246.0 4.0741e-31 485960000.0 373132.0 411506.0 377503.0 432672.0 391988.0 403633.0 417861.0 375257.0 450527.0 433765.0 True False 371123.09877086256 425202.7284493699 430652.14108510234 487448.23083714064 441905.34830509673 375730.8007598808 397647.46704596485 403260.58285643527 339500.6576025061 406081.7463350996 0.9139122901244886 1.0470865343907667 1.0605060310436292 1.2003697167783975 1.0882177105799662 0.9252590251860936 0.9792300950110306 0.9930527202856926 0.8360401832057464 1.0 18.63141065298273 2.74106559557522 24.621206084985918 0.9529012768871605 1.068791066204356 0.34918765712853284 0.07820597649964112 217.7633166272813 2140381.721496996 0.02529274050302228 0.02570130444902521 550.8908963489727 -2.74106559557522 0.11588978931719551 LEPVYSPPGS(ph)PPPGDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEPVYSPPGSPPPGDPR 17 0 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 LEPVYS(0.072)PPGS(0.928)PPPGDPR;LEPVY(0.001)S(0.351)PPGS(0.648)PPPGDPR;LEPVYS(0.287)PPGS(0.713)PPPGDPR;LEPVYS(0.233)PPGS(0.767)PPPGDPR 113.01 0.00045398 1480870000.0 900470.0 1089270.0 1060280.0 1060160.0 921910.0 1011220.0 927200.0 842090.0 991900.0 933400.0 True False 895621.9695716222 1125525.6934723803 1209558.2078810295 1194376.1472993456 1039309.7739113212 941316.7415558338 882347.7937520342 904931.0318463767 747459.5357790458 873829.6128760561 1.0249389084261409 1.2880379388470378 1.3842037281158073 1.3668295623082252 1.1893734872300978 1.0772314507145802 1.0097481027770872 1.0355920862740686 0.8553836180018144 1.0 19.736992471985392 2.6537366860602396 1.873197796644259 0.9823748619781648 1.27549409877575 0.6220971980037517 0.10254290903176413 0.23440904413690283 1.6350456726943678 0.04146108171148332 0.038267772566638686 450.54345597668635 -2.6537366860602396 0.2931192367975851 LEQDEYALR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEQDEYALR 9 0 P55084-2;P55084;F5GZQ3 P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase 0 ;; 175.91 0.00012459 930480000.0 646590.0 701050.0 794210.0 586040.0 805200.0 1234250.0 736180.0 546280.0 923470.0 897320.0 False True 643108.831282902 724384.0254563257 906027.8646029271 660232.6039119652 907737.4472056879 1148929.2026119842 700568.1609192974 587046.1875536335 695893.1923640234 840052.2693656976 0.7655581143403105 0.8623082775590737 1.0785374882530179 0.7859422895321624 1.0805725790028489 1.3676877552863607 0.8339578219915753 0.6988210245499334 0.8283927295255983 1.0 19.680119571862267 -2.620940715402655 2.025595136272293 2.470676635851401 0.9188437008083108 0.014462863986083763 0.19007151863237753 10130890.927802073 408405.30483240605 69296554.89458126 0.05013325055055908 0.002393642485046018 2.620940715402655 -1.5518329350430902 LEQEHTNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEQEHTNR 8 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 74.92 0.03973 80898000.0 34961.0 43723.0 39722.0 45394.0 41715.0 39686.0 40170.0 58936.0 43460.0 54997.0 False True 34772.773860532245 45178.29362388834 45314.51233018661 51140.87574564832 47027.15798582382 36942.60023079534 38226.823635698005 63334.10359094408 32749.86533416405 51487.04437469941 0.6753693921032198 0.8774691608844579 0.8801148498719036 0.9932765876686991 0.9133784733025543 0.7175125447470593 0.7424551962528764 1.2300978694761955 0.636079730967374 1.0 15.651921833830258 4.7836001722622665 2.6737315714058134 0.9047503534939717 0.6140563943048888 0.13102321697668906 0.160328411669664 1.1260405472180413 9.613161980933983 0.03984239386397588 0.7630870470135321 60757.53870995759 -4.7836001722622665 -0.2906939591890829 LEQGEEPWIMGGEFPCQHS(ph)PEAWR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEQGEEPWIMGGEFPCQHSPEAWR 24 0 I3L0D1;Q9NYW8 I3L0D1 RBAK-RBAKDN;RBAK RB-associated KRAB zinc finger protein 1 LEQGEEPWIMGGEFPCQHS(1)PEAWR;LEQGEEPWIMGGEFPCQHS(1)PEAWR;LEQGEEPWIMGGEFPCQHS(1)PEAWR;LEQGEEPWIMGGEFPCQHS(1)PEAWR 160.11 1.3509e-11 565895000.0 266821.0 326802.0 334778.0 330739.0 328178.0 355428.0 334847.0 311707.0 382550.0 342833.0 True False 265384.46538259985 337679.4070140191 381911.8324574602 372610.5234885661 369969.5230365979 330858.0989475166 318649.171370241 334968.15915607446 288275.67840737366 320953.104425902 0.8268636810891754 1.0521144751599643 1.1899303268637853 1.1609500526722283 1.1527214347976877 1.0308611893296122 0.9928215897466325 1.0436669860391024 0.8981862908695668 1.0 18.292002989994117 2.501327059264107 6.914520116889641 0.9955274551285438 1.0868615023700985 0.15164952376707685 0.10054016237649102 0.37107230371483935 72.23835503602885 0.03503052258377395 0.03184251674201686 317.1955305577099 -2.501327059264107 0.0913340472415547 LEQKSDELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEQKSDELR 9 1 H0Y940;H0YA33;A6NMZ7-2;A6NMZ7 H0Y940 COL6A6 Collagen alpha-6(VI) chain 0 57.59 0.068731 140670000.0 63209.0 114890.0 111990.0 125670.0 128800.0 92639.0 105440.0 102500.0 88838.0 109490.0 False True 62868.68976718007 118714.0441975285 127757.21856546986 141579.80911476476 145201.91654258902 86235.08397874935 100339.46438008452 110149.0704844537 66945.06526821134 102502.2544608949 0.6133395806544409 1.158160323613355 1.246384474540605 1.3812360504595353 1.416572906676743 0.8412993883139268 0.9789000730551201 1.0746014423173111 0.653108223036706 1.0 16.64529611552153 2.7150126395844145 24.920014984421016 0.9332544999720178 1.1796034176924703 0.22612357638903113 0.23148211296462998 1248.3750651215755 1321110.953555636 0.07726295982339217 0.07288115465574181 518.8151381590528 -2.7150126395844145 0.24634891772045253 LEQLCEEFS(ph)EEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LEQLCEEFSEEER 13 0 Q9H3C7-3;Q9H3C7 Q9H3C7-3 GGNBP2 Gametogenetin-binding protein 2 1 LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER 114.27 0.00079291 518920000.0 464260.0 628600.0 615940.0 519450.0 589760.0 606110.0 524670.0 476590.0 441620.0 645710.0 True False 461760.4757441346 649522.5710032763 702658.9981535454 585212.316739591 664862.4402186121 564211.0423294703 499289.7076659621 512155.5658749831 332788.66840482125 604500.2349798565 0.7638714578159289 1.07447860797758 1.1623800248431 0.9680927861989859 1.0998547258476532 0.9333512374040206 0.825954530328015 0.8472379930374211 0.550518675010789 1.0 19.205383374712216 2.30965090174714 2.267274080139618 0.7904023524441168 1.023435540018706 0.3170119289729185 0.14285923770217795 0.33505278999984617 3.532351065932616 0.0598639435959819 0.04354152356197309 204.00973971045414 -2.30965090174714 0.23303318757458924 LEQLDHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEQLDHR 7 0 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 ;;; 171.38 0.00093961 1251450000.0 1794970.0 2122780.0 1878950.0 2051340.0 2074320.0 2111290.0 2059010.0 1821080.0 2164070.0 2059330.0 False True 1785306.0809599138 2193435.449052392 2143489.8278738256 2311039.4336713715 2338472.3565421053 1965341.491742074 1959407.8201179642 1956978.2368568685 1630763.945552333 1927901.7963188845 0.9260357993175579 1.1377319390647982 1.111825214316716 1.198732963517149 1.2129623827350335 1.019419918325029 1.0163421310459055 1.0150819095627703 0.8458750070496831 1.0 20.878600134599473 2.087109652403572 1.4411214233086627 0.9472690979216271 1.118553850690925 0.3916522748035284 0.08650011526021367 0.43178835725339754 1.693592284506501 0.056989944044098524 0.029168033541781335 122.210818396492 -2.087109652403572 0.1712847527692979 LEQMPSKEDAIEHFMK ddPTM_BT-474_Trastuzumab_2h_R1 2 LEQMPSKEDAIEHFMK 16 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 176.94 1.8201e-09 3096100000.0 2418300.0 2011140.0 2041100.0 1763070.0 1808690.0 2449200.0 2442300.0 2242900.0 3334200.0 2500800.0 False True 2405280.1414983883 2078079.5791401966 2328469.138440761 1986274.48122836 2039015.950554468 2279892.568796653 2324156.618507972 2410276.587215426 2512531.085991019 2341196.8029574025 1.0273720425638868 0.8876142221427793 0.994563607595669 0.8484013299177992 0.8709288975530722 0.9738150017617869 0.9927215924659109 1.0295061842604438 1.0731823496500537 1.0 21.15881478302091 2.208981140703117 2.0346954550095617 1.034506355036475 0.9240611224655625 0.42357091144157644 0.05416754091228137 0.30105635854156204 2.501578404622484 0.026261362913775947 0.016795364401327083 161.80097738232055 -2.208981140703117 -0.11044523257091254 LEQPEEDKYSKPTAPAPSAPPS(ph)PSAPEPPKADLFEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEQPEEDKYSKPTAPAPSAPPSPSAPEPPKADLFEQK 37 3 P55198 P55198 MLLT6 Protein AF-17 1 LEQPEEDKYSKPTAPAPS(0.001)APPS(0.989)PS(0.01)APEPPKADLFEQK 144.68 2.927e-13 3664700000.0 3162400.0 1645200.0 1527500.0 1494400.0 1362400.0 2611600.0 2712800.0 2520400.0 4536400.0 2188700.0 True False 3145373.9897756735 1699959.4874555974 1742558.7227319865 1683590.8867757139 1535893.5644225427 2431066.2390451343 2581571.500097627 2708485.046331875 3418465.0046456917 2049015.2921596568 1.5350661372860999 0.8296470475160995 0.8504371487122159 0.8216585270094365 0.7495764283943995 1.186455878756667 1.2599083618242093 1.3218471607779652 1.6683452865022976 1.0 20.96649932079904 2.4759019322957356 3.3879187679515126 1.3326076405708742 0.936803522582529 0.2964989439987119 0.25650291229142824 0.2756531934467621 6.693049172161159 0.09044166603117441 0.07815195583636607 299.1589031904602 -2.4759019322957356 -0.39580411798834525 LEQQLVHVERPILR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEQQLVHVERPILR 14 1 E5RIA4;E7ETB3;Q9ULA0-2;Q9ULA0;C9JBE1;E7EMB6;E7EPX3;B9ZVU2;F8WAN0;C9JRG3;C9J1E2 E5RIA4 DNPEP Aspartyl aminopeptidase 0 ;;; 242.26 1.0707999999999999e-17 2025800000.0 565260.0 723340.0 675230.0 668530.0 711200.0 694350.0 688450.0 613140.0 698520.0 724540.0 False True 562216.7029662901 747415.9346317357 770296.5147956283 753165.8294540745 801767.1043873406 646351.2188240885 655147.0433656037 658895.620261834 526379.1056884555 678299.2368900981 0.8288623551221592 1.101897059561098 1.1356293401232826 1.1103739890777833 1.1820256618057312 0.9528998171773175 0.9658672864934306 0.9713937218664335 0.7760278606560521 1.0 19.37156234416693 2.5895310749522475 7.617732272157921 0.9355585128603019 1.0789556790195356 0.304165384095623 0.10474862925010621 0.34617445921389184 21.120582588153425 0.033976009021500775 0.03197288418885022 388.62530415785386 -2.5895310749522475 0.1433971661592337 LEQTSVR ddPTM_BT-474_Trastuzumab_2h_R1 5 LEQTSVR 7 0 O15234 O15234 CASC3 Protein CASC3 0 ;;;; 89.67299999999999 0.041178 6223880000.0 2355030.0 3589100.0 3038630.0 3099310.0 2983300.0 2835290.0 2916990.0 2879240.0 3890680.0 2997730.0 False True 2342350.780148429 3708561.0238432377 3466442.6917545646 3491682.3282205844 3363205.5715955477 2639293.075854754 2775884.0497160763 3094103.509284476 2931874.0464409883 2806412.304914223 0.8346424280020472 1.3214597931135383 1.2351865353799163 1.2441800950296598 1.198400379625738 0.9404509348940526 0.9891219636028927 1.1025120948431153 1.0447053846318566 1.0 21.420295547832275 2.7559740745173125 24.153431383160953 1.026129683877863 1.183468579237967 0.25361101100350925 0.12762341978653222 715.9174626603483 993015.4880474828 0.0381793966084092 0.04039913420691748 570.1302369812196 -2.7559740745173125 0.15733889536010404 LEQTSVRDPS(ph)PEADAPVLGSPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEQTSVRDPSPEADAPVLGSPEK 23 1 O15234 O15234 CASC3 Protein CASC3 1 LEQT(0.01)S(0.007)VRDPS(0.983)PEADAPVLGSPEK 110.25 0.00065077 151720000.0 339280.0 421470.0 384320.0 366040.0 359440.0 462640.0 376750.0 375730.0 457270.0 450430.0 True False 337453.3541775516 435498.37416600494 438428.9154306757 412380.6264690729 405212.5534322065 430658.7857374172 358525.1631752358 403768.8805182812 344581.93560407695 421683.1717674759 0.8002533104727019 1.0327620434569937 1.0397116716633732 0.9779394912549828 0.9609407739316863 1.0212852078785126 0.8502240240521938 0.9575171777092566 0.8171583754688839 1.0 18.685799923153603 2.244943183593079 24.99833268711726 0.9066859770796056 0.9777286992126027 0.13976558598331112 0.07939873862724539 274.92429052798985 1076787.98944828 0.026648568797403734 0.021786512221938628 175.76936493274948 -2.244943183593079 0.07104272213299712 LEQTSVRDPS(ph)PEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 48 3 O15234 O15234 CASC3 Protein CASC3 1 LEQT(0.067)S(0.058)VRDPS(0.875)PEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 94.788 7.414500000000002e-06 627130000.0 25916.0 20725.0 25097.0 22224.0 15428.0 27810.0 24597.0 28556.0 37997.0 34391.0 True False 25776.471135538293 21414.819096472947 28630.43945296544 25037.55612132193 17392.664351079693 25887.560157698383 23407.14914033518 30686.993724429853 28633.148483714467 32196.13693638358 0.8006075755756065 0.6651362906918472 0.889250766622604 0.777657150943099 0.5402096650739776 0.8040579591535988 0.727017318462318 0.9531265749386131 0.8893349081068568 1.0 14.974599976055146 1.7283134340377668 6.092665929474894 0.9402177816215842 0.7416827451359266 0.5093697843063943 0.09151551406856095 0.11953973385316995 11.549022131413988 0.04582910135026826 0.023666452440599315 53.49502983128857 -1.7283134340377668 -0.19853503648565762 LERLDHLAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LERLDHLAEK 10 1 O43707;O43707-2;P12814-3;P12814;P12814-2;P12814-4;H9KV75 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 76.655 0.021238 164700000.0 180970.0 219540.0 207410.0 178100.0 209850.0 250270.0 240240.0 224310.0 337210.0 281920.0 False True 179995.6776276573 226847.2561852677 236611.52515996195 200647.44173899555 236573.15362160176 232969.4239722104 228618.6733940775 241049.1512231005 254109.11388250033 263927.6242361448 0.6819887768421284 0.8595055437709692 0.8965015535784073 0.76023660774315 0.8963561669843695 0.8827019325713511 0.8662172974721463 0.9133153527249797 0.9627984740814416 1.0 18.0097828340543 7.999999999987802 0.11727844417389731 1.0527229908021987 0.13440201698252718 0.6369306283343559 0.05267709176874086 65.40956454320454 0.5289801826253412 0.37727087679294435 9.793163693800915 99999999.99719125 -7.999999999987802 -0.9183209738196715 LES(ph)LNIQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LESLNIQR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 LES(1)LNIQR;LES(1)LNIQR;LES(1)LNIQR;LES(1)LNIQR 165.18 0.00034175 439348000.0 1254590.0 496030.0 471390.0 646560.0 476220.0 605600.0 481310.0 590240.0 1153050.0 762600.0 True False 1247835.4268380525 512540.0586935325 537757.6146046697 728414.4297067098 536863.7942229178 563736.2974290602 458027.19651724707 634286.7059779892 868896.2775784124 713930.2151052925 1.747839495284589 0.717913386839835 0.7532355449129712 1.0202879977551884 0.75198357327367 0.7896238112655293 0.641557377494796 0.8884435657124314 1.2170605182332352 1.0 19.445423535747363 4.743628834148234 24.995834990894796 0.8482027363082237 1.7478398679565266 0.7203603420541042 0.1648384631540338 274.83659301866714 1355417.5003315655 0.03873677629555709 0.32593802547598233 55415.19096023588 -4.743628834148234 0.8996371316483028 LES(ph)PSFTGTGDTEIAHATEDLENNGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LESPSFTGTGDTEIAHATEDLENNGSK 27 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 LES(0.86)PS(0.14)FT(0.001)GTGDTEIAHATEDLENNGSK;LES(0.998)PS(0.001)FT(0.001)GT(0.001)GDTEIAHATEDLENNGSK 237.35 2.9988e-45 209703000.0 205726.0 174433.0 164706.0 127518.0 149406.0 197481.0 162299.0 183754.0 224660.0 186146.0 True False 204618.3940743071 180238.89695802474 187895.1731497838 143661.76572528496 168431.96850125815 183829.6032902712 154447.9773276114 197466.65656390536 169295.55328976747 174266.00291239156 1.1741727626424907 1.0342745799284552 1.0782090023849575 0.8243820557329693 0.9665222457987612 1.054879323666404 0.8862771553052535 1.1331335617032394 0.9714778009505223 1.0 17.410931619840444 4.785097765132714 1.5757593236750294 0.9908619279450231 1.252252968861142 0.31151086746098555 0.08402720146458564 1.5473058727368811 3.334429298789392 0.022544920164430972 0.6441976129469709 60967.41270831246 -4.785097765132714 0.26139104091611876 LES(ph)PSFTGTGDTEIAHATEDLENNGSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LESPSFTGTGDTEIAHATEDLENNGSKK 28 1 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 LES(0.926)PS(0.046)FT(0.013)GT(0.014)GDTEIAHATEDLENNGSKK 72.842 0.0048199 43986000.0 50425.0 35668.0 41414.0 33797.0 29915.0 49655.0 46184.0 47494.0 72987.0 49604.0 True False 50153.51740274416 36855.1878182387 47244.731223058996 38075.696734715515 33724.497929903366 46222.46672529718 43949.903479986955 51038.24344964533 55000.33182569332 46438.230251879024 1.080004925483025 0.793638939691235 1.017367177147052 0.8199213563521807 0.7262227209560549 0.9953537521690307 0.9464164168531942 1.0990565999784234 1.1843761385258185 1.0 15.503025372091255 1.927104114994892 1.9449937746077957 1.1089206969442034 0.8912341154321165 0.3686731479775429 0.11008867264168627 0.3234873385274365 2.267337653964407 0.06591698751590964 0.03185916044827539 84.54815112225593 -1.927104114994892 -0.21768658151208686 LES(ph)VEEYNELMVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LESVEEYNELMVR 13 0 O15018 O15018 PDZD2 PDZ domain-containing protein 2;Processed PDZ domain-containing protein 2 1 LES(1)VEEYNELMVR;LES(1)VEEYNELMVR 171.08 2.6961e-05 63600000.0 31704.0 42463.0 33623.0 38501.0 34976.0 30554.0 34335.0 29142.0 34478.0 36387.0 True False 31533.309186645554 43876.35528557444 38356.82614364496 43375.22265240353 39429.986281006204 28441.873896379617 32674.084877562622 31316.72402007758 25981.35888153031 34064.75050752198 0.9256873664664754 1.2880280827504056 1.1259975655824994 1.2733169040185885 1.1575011028570281 0.8349356291366128 0.9591758163720506 0.9193293229364002 0.7627050982156248 1.0 15.055992019960529 2.7486503970873595 23.749021460054365 0.8980847029910458 1.1666075707483528 0.5758709715773065 0.11081069585908819 235.87956105929092 555205.4972005216 0.03209764585802122 0.033651281654498225 560.5965195003823 -2.7486503970873595 0.26852286775730694 LESALTELEQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LESALTELEQLR 12 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 128.17 0.00059747 8977800.0 13866.0 16858.0 13856.0 15839.0 12452.0 14734.0 15832.0 12706.0 19649.0 17192.0 False True 13791.346996657432 17419.108339123803 15806.804361488988 17844.21577599075 14037.68839121365 13715.473260105298 15066.145675886748 13654.18623976068 14806.767233110659 16094.791841188293 0.8568825948630103 1.0822823004486732 0.9821067906599256 1.1086950332793677 0.8721882537983315 0.8521684154377155 0.93608825914299 0.8483605364076942 0.9199725836291066 1.0 13.974306297674307 3.211687579368491 24.996644454419556 0.8937970715496238 1.0110207170824321 0.3000702791548312 0.07565065836093027 220.602532591102 205198.52100709494 0.020365678972332078 0.024347796989536867 1628.124379141166 -3.211687579368491 0.11722364553280828 LESAQATFQAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LESAQATFQAHR 12 0 A0A087X1E4;P53365;P53365-2;P53365-3 A0A087X1E4 ARFIP2 Arfaptin-2 0 88.803 0.0097805 322150000.0 308990.0 341340.0 335340.0 337720.0 262350.0 312450.0 321820.0 256720.0 356660.0 326660.0 False True 307326.4321720166 352701.2955556128 382552.9571724686 380475.31737278827 295758.71742972225 290851.0669281861 306252.3371282136 275877.749997746 268765.92199914757 305812.27913230343 1.0049512499759963 1.153326140324875 1.2509404732141736 1.2441466328701059 0.9671250555042896 0.951077137103299 1.001438980792919 0.9021146919950627 0.8788591575254291 1.0 18.222286810133646 3.1729542015970162 7.0785564658807365 0.9446288046805482 1.168509998251496 0.6757743213211318 0.07232041781482426 0.12860449709042154 11.373980169419921 0.021996739695156056 0.026467952184674296 1489.2040258365726 -3.1729542015970162 0.2238811935709477 LESDYEILER ddPTM_BT-474_Trastuzumab_2h_R1 5 LESDYEILER 10 0 A0A0A0MSX9;P41252;J3KR24;Q5TCD1 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;;; 264.64 3.4434000000000006e-17 1446199000.0 1118564.0 1266840.0 1124670.0 1180040.0 1170230.0 1199520.0 1237220.0 1152514.0 1361230.0 1260420.0 False True 1112541.775708143 1309006.0035790496 1283013.7601931172 1329432.943007772 1319251.854003371 1116600.005766358 1177370.9419606242 1238520.4470275086 1025773.1060474939 1179978.916500147 0.9428488595440123 1.1093469427925042 1.0873192243117145 1.1266582177170676 1.1180300220247255 0.9462880990096224 0.997789812594908 1.0496123529910157 0.8693147747842545 1.0 20.170329651510933 2.739110290356782 24.99885158740977 0.9838739282070555 1.0819963443686744 0.3817842622090434 0.06537833019764368 56.92924490755759 2589151.011430692 0.02047487038701945 0.02056304098575257 548.4162191445901 -2.739110290356782 0.09812241616161888 LESEMEDAYHEHQANLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LESEMEDAYHEHQANLLR 18 0 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 310.49 2.2245999999999996e-61 232290000.0 206953.0 250180.0 226580.0 222544.0 228160.0 232110.0 217145.0 43562.0 252950.0 166262.0 False True 205838.78804263985 258507.09006299623 258480.4945313346 250718.0475820495 257214.82358972926 216064.78202816867 206640.86677554483 46812.81764335392 190613.86185634584 155651.01681594044 1.3224377986945448 1.6608120868794873 1.660641220461743 1.610770380501447 1.6525097545227698 1.3881360138088168 1.3275908567940844 0.3007549748210816 1.2246232999669349 1.0 17.247955475918 1.946755405504742 6.7241533671877045 0.7714125784368425 1.5510626319291017 0.6229452767469071 0.24424095692808623 0.13231388399876767 13.565119198594843 0.10146231443090166 0.06332407340643043 88.4617253389508 -1.946755405504742 0.7796500534922591 LESENDEYER ddPTM_BT-474_Trastuzumab_2h_R1 2 LESENDEYER 10 0 O94906 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 254.57 9.555799999999997e-17 1365470000.0 717090.0 794060.0 741230.0 773850.0 781550.0 771790.0 785020.0 777680.0 878680.0 807690.0 False True 713229.2671161888 820489.8070805938 845588.7411133435 871819.3306553713 881075.7598902221 718437.9738982392 747045.5835323778 835714.4305790244 662141.0877087723 756142.5327018022 0.9432471211052255 1.0850993980577575 1.1182927881228129 1.1529827948445643 1.1652244408762673 0.9501356461607319 0.9879692666712985 1.105233992846429 0.875682902458681 1.0 19.528298682216647 2.732057705049965 24.992464485028037 1.0001169068815032 1.097273034203344 0.31668065857849026 0.07823945023643304 755.0561359473529 2901881.181202838 0.025934439124601947 0.02498852976080837 539.5823124792345 -2.732057705049965 0.09715612732184087 LESEST(ph)SPSLEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 LESES(0.001)T(0.879)S(0.121)PSLEMK 397.53 1.4682999999999994e-107 819570000.0 2102800.0 1995700.0 1663600.0 1576500.0 1650300.0 2099300.0 2093500.0 1974000.0 2882500.0 2200300.0 True False 2091478.7584430438 2062125.668073876 1897820.4197295841 1776084.7383578122 1860455.922905551 1954180.332220649 1992229.4070533686 2121309.903768894 2172146.4985211194 2059874.9702283961 1.015342575967678 1.0010926380862963 0.9213279675509414 0.8622293896609086 0.9031887613544167 0.9486888090125064 0.967160354801764 1.0298245934478663 1.0545040499619618 1.0 20.974125341050303 1.8720891979879424 2.5361865243261668 1.0330677746500512 0.9385794122263786 0.438016068559434 0.04342244234224269 0.27940339062325154 3.2654157340592818 0.027735006581943767 0.013846710475453845 74.48849471041629 -1.8720891979879424 -0.09448836242367253 LESESTS(ph)PSLEMK ddPTM_BT-474_Trastuzumab_2h_R1 7 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 LESEST(0.004)S(0.995)PS(0.001)LEMK;LESEST(0.01)S(0.989)PS(0.001)LEMK;LESEST(0.324)S(0.676)PSLEMK;LESEST(0.261)S(0.739)PSLEMK;LESEST(0.204)S(0.796)PSLEMK;LESES(0.011)T(0.074)S(0.874)PS(0.041)LEMK;LESEST(0.008)S(0.836)PS(0.156)LEMK 383.98 6.326599999999998e-108 2506260000.0 9121060.0 8572030.0 7548860.0 7262327.0 7492603.0 9661200.0 9329730.0 8768490.0 12774210.0 9761010.0 True False 9071953.226405041 8857344.836648434 8611673.872132646 8181736.853576831 8446741.57991267 8993343.984018536 8878415.316870317 9422839.249290036 9626177.1111443 9138053.984978897 0.9927664294079995 0.9692812989732943 0.942396913641404 0.8953478352202714 0.9243479622463815 0.9841640242880776 0.9715870940864024 1.0311647605474061 1.0534165290517847 1.0 23.123455534920577 1.9931613939349009 1.6991053146864687 1.0327959700130869 0.9457894774819345 0.5795388281431186 0.029233124510940515 0.2648463701017827 1.4260019564418125 0.019790666139731943 0.009729510702196142 98.43768551408785 -1.9931613939349009 -0.08700649253115234 LESESTSPS(ph)LEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 LESEST(0.002)S(0.404)PS(0.594)LEMK 242.4 2.4374e-16 197310000.0 353990.0 343330.0 279630.0 269290.0 297430.0 379570.0 350270.0 342020.0 476430.0 363610.0 True False 352084.1571719864 354757.531502632 318999.4734124689 303382.0863890741 335305.94749427226 353331.21931167156 333326.1019386597 367543.2691423693 359020.2103349231 340404.09849781677 1.0343123326825765 1.0421658642423992 0.9371199548424792 0.8912409918913473 0.9850232384802582 1.0379758083727588 0.9792070759712005 1.079726333391155 1.054688271731328 1.0 18.376888881751167 2.3165366672460292 1.5339487519167947 1.0457079931783249 0.9768200676271421 0.19929075086001047 0.04902108911650079 0.5941652571668997 2.801113335913111 0.028269816407480185 0.018375013278351747 207.27010492134454 -2.3165366672460292 -0.06888792555118273 LESEVGHWR ddPTM_BT-474_Trastuzumab_2h_R1 1 LESEVGHWR 9 0 Q15643-2;Q15643;G3V4R7 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 100.57 0.0045715 164040000.0 153330.0 261740.0 239410.0 309300.0 266690.0 215420.0 217760.0 187160.0 165310.0 203900.0 False True 152504.48831656447 270451.8576748285 273116.84701097594 348457.34828675643 300651.3907045272 200528.52244413484 207226.11687601672 201126.8295792229 124571.56554051202 190886.92743242742 0.7989257848500387 1.4168170723506799 1.4307781611061727 1.8254647029724327 1.5750234693832328 1.0505094567836264 1.0855961676546617 1.0536438104197592 0.6525934867101334 1.0 17.542358780037844 2.6286477555544754 5.049593481837042 0.9799109659881404 1.4328924259618627 0.4089367426221072 0.26501669566937214 0.2441901088549995 9.360448648605098 0.09096805205084339 0.08546272023388429 425.2533617829456 -2.6286477555544754 0.4529814599737223 LESLS(ph)YQLSGLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LESLSYQLSGLQK 13 0 Q03252 Q03252 LMNB2 Lamin-B2 1 LES(0.12)LS(0.88)YQLSGLQK 139.7 4.1845e-06 0.0 128750.0 116830.0 112060.0 116730.0 105280.0 125110.0 135750.0 126600.0 213070.0 147990.0 True False 128056.82430546971 120718.61592477353 127837.07395701899 131508.00603140338 118686.78395655102 116461.44017726167 129183.25388464026 136047.53486177415 160561.75349172426 138545.15149938664 0.9242966853736244 0.871330498529268 0.9227105573419142 0.9492068441816643 0.856665012611982 0.8406027848457567 0.9324271003825938 0.9819725438921365 1.1589128291684396 1.0 17.079996697849534 1.5552315154159368 2.8998675223102715 1.0787310135259949 0.8968886912328915 0.6744283129311837 0.04953514547998639 0.12103216133378857 2.268788888741164 0.03346497892279834 0.012685267527320186 35.91133211740753 -1.5552315154159368 -0.18184232229310338 LESLSETPGPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 LESLSETPGPSSPR 14 0 A0A2R8YF49;H0Y895;Q12774-2;C9J591;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 LESLSETPGPS(0.001)S(0.999)PR;LESLSETPGPSS(1)PR;LESLSETPGPSS(1)PR;LESLSETPGPSS(1)PR 401.16 6.631499999999997e-116 4874400000.0 3294730.0 3673020.0 3702390.0 3504060.0 3823030.0 4438080.0 3916290.0 3649520.0 4638060.0 4107150.0 True False 3276991.5397589174 3795274.2503125225 4223654.330249225 3947673.636720635 4309870.209625893 4131285.9757165797 3726844.0910193636 3921865.7142870626 3495072.259819901 3845028.17069198 0.852267238179731 0.9870601935354603 1.0984716217278336 1.026695634328781 1.1208943129408222 1.074448818660562 0.9692631433565422 1.0199836100501845 0.9089848252505525 1.0 21.87456273749014 2.2148601768868366 24.983107150580743 0.980663221769649 1.032392522435852 0.09963289027308753 0.0746244621170062 599.5586629277818 632002.5319089124 0.029157137789194543 0.02154459361132879 164.006166276741 -2.2148601768868366 0.05172930066620285 LESPTTPLLDDMDGS(ph)QDSPIFMYAPEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LESPTTPLLDDMDGSQDSPIFMYAPEFK 28 0 Q9H3M7-2;Q9H3M7 Q9H3M7-2 TXNIP Thioredoxin-interacting protein 1 LESPTTPLLDDMDGS(0.547)QDS(0.453)PIFMYAPEFK 179.16 1.0400999999999999e-17 58048000.0 202740.0 182510.0 154340.0 149600.0 65960.0 173210.0 168730.0 136970.0 200100.0 172700.0 True False 201648.47036653175 188584.73502037537 176069.73045267112 168539.34466116657 74359.61502445005 161236.4003924827 160567.88528880585 147191.3969195671 150788.03620262825 161678.13814409115 1.2472216261348714 1.166420749181961 1.0890138424018334 1.0424374414242732 0.4599237465128347 0.9972677954071022 0.9931329438350173 0.9103976493617638 0.9326433241595261 1.0 17.30276508755017 3.6647223773536806 3.1624823948373435 0.8864880344016962 1.1758231824421748 0.39589982872160534 0.1554927846900864 0.25973300097234847 5.071356127896029 0.04320041775863552 0.07365466172856629 4620.855388927391 -3.6647223773536806 0.28933514804047855 LESPTTPLLDDMDGSQDS(ph)PIFMYAPEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LESPTTPLLDDMDGSQDSPIFMYAPEFK 28 0 Q9H3M7-2;Q9H3M7 Q9H3M7-2 TXNIP Thioredoxin-interacting protein 1 LESPTTPLLDDMDGS(0.03)QDS(0.97)PIFMYAPEFK 120.85 3.2497e-05 50635000.0 181200.0 176750.0 143780.0 138650.0 59077.0 162970.0 142800.0 123960.0 186460.0 154710.0 True False 180224.43933321236 182633.01690236878 164022.9742418366 156203.07578389507 66600.10577318727 151704.26749011554 135892.2184510252 133210.52465612566 140509.4314359923 144836.27534610513 1.2443321875168538 1.2609618444408586 1.1324716397869412 1.0784803421009515 0.45983028501691064 1.0474190055467696 0.93824712162953 0.9197317753290865 0.9701259653372521 1.0 17.14406345605426 3.4690848665117966 24.99954947135709 0.8874371767382702 1.1987676445804194 0.4699777262639294 0.15553573938404175 160.68476040861285 499855.3193141063 0.0428260316699352 0.05808529364087578 2944.997066415146 -3.4690848665117966 0.31133046784214924 LESTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 LESTSPK 7 0 Q03111 Q03111 MLLT1 Protein ENL 1 LES(0.209)T(0.223)S(0.569)PK;LES(0.007)T(0.219)S(0.774)PK;LES(0.001)T(0.029)S(0.97)PK;LES(0.022)T(0.111)S(0.867)PK 121.35 0.0046647 5495330000.0 13130200.0 10364500.0 8706800.0 8310200.0 8441100.0 8631700.0 12112600.0 11472100.0 17510700.0 11099500.0 True False 13059508.462102367 10709476.11702745 9932641.759137731 9362270.467936 9516024.05068051 8035010.89583622 11526667.263374541 12328206.356143434 13195422.616358625 10391120.40723997 1.2567950278973967 1.030637284268756 0.9558778427990503 0.9009875837270519 0.9157842155356279 0.773257414112713 1.1092805021625372 1.186417428822575 1.269874864231654 1.0 23.30884788330664 2.016022134064235 24.832741242325216 1.1665701379694258 0.9660767549502516 0.28745270490845287 0.13097550312886697 253.29362996164275 392578.72126717155 0.050356090989351815 0.03717926045561423 103.75812953888408 -2.016022134064235 -0.2004933830191742 LET(ph)HMTPEMFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LETHMTPEMFR 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 LET(0.82)HMT(0.18)PEMFR 46.73 0.06901900000000001 4451000000.0 1633400.0 1560800.0 1254500.0 1417500.0 1345900.0 1441300.0 1538700.0 1442800.0 1486100.0 1521400.0 True False 1624605.955887802 1612750.2844764749 1431122.6956905266 1596955.354660449 1517292.3872257043 1341666.323455257 1464267.2025951853 1550469.0623899505 1119870.567719768 1424302.9494639302 1.1406323047349305 1.1323084636477592 1.0047881289785738 1.121218877810722 1.0652876818072818 0.9419810047856916 1.0280588151181576 1.0885809532118893 0.7862586875504664 1.0 20.441824609732556 3.7962936712558033 0.3496406037847204 0.9559843990760177 1.1983700986852064 0.35809341738813194 0.08185982926077352 4.256747615830139 0.6756327665751214 0.08518542068599397 0.41441999243334154 6255.955794234849 -3.7962936712558033 0.24238569960918865 LETHMTPEMFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LETHMTPEMFR 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;; 220.1 9.396e-12 1656750000.0 1523110.0 2312830.0 2652330.0 2202920.0 1357940.0 1639760.0 2293820.0 1534000.0 3197990.0 1974120.0 False True 1514909.7449934285 2389811.1484147413 3025755.0095343576 2481809.4461295265 1530865.6098590344 1526407.2507798446 2182859.1633566525 1648474.869494168 2409888.215370528 1848129.9714708386 0.8196987053826003 1.2930969062272197 1.6371981712554031 1.3428760338507861 0.8283322241891307 0.8259198618834419 1.1811177769166412 0.8919691228113277 1.3039603559118802 1.0 20.817634788525602 3.253865774884175 24.975480237441683 0.9964280554557099 1.3006361186732653 0.23714247199199467 0.2330999924574321 319.04080369465606 520618.58510290406 0.06558647566340174 0.08847743290896433 1794.1790236399527 -3.253865774884175 0.30420806321755545 LETLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LETLLR 6 0 A0A1W2PR85;O95816-2;O95816;Q9UL42;O15056-3;O15056-2;O15056 A0A1W2PR85 BAG2;PNMA2;SYNJ2 BAG family molecular chaperone regulator 2;Paraneoplastic antigen Ma2;Synaptojanin-2 0 106.84 0.073922 200830000.0 198520.0 223110.0 192710.0 215540.0 196030.0 243470.0 183380.0 176560.0 249830.0 220980.0 False True 197451.1903776456 230536.08147715693 219841.89293465242 242827.3419001859 220993.2585391597 226639.4919667325 174509.20882037116 189735.8037535138 188262.744050488 206876.86720950363 0.954438227149328 1.1143637497357 1.062670253566916 1.1737771611471441 1.0682357168303425 1.095528441743152 0.8435414320328342 0.9171436435247683 0.910023177506042 1.0 17.65841280775478 2.2494970658284026 24.986060861484024 0.909053898830507 1.0830040070607412 0.6104432885735296 0.06258615378983384 123.80315287718255 282847.92541660735 0.020869159995867102 0.0173033673287222 177.62212677776844 -2.2494970658284026 0.17395010823023416 LETMFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LETMFR 6 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 106.76 0.074087 45405000.0 48832.0 63283.0 56237.0 56520.0 50363.0 57975.0 45864.0 43142.0 51132.0 56273.0 False True 48569.09393774524 65389.3363996187 64154.68077923327 63675.426204873846 56776.42952511192 53967.32470847048 43645.38310250567 46361.475110637104 38531.2037336971 52681.60896226083 0.9219364194540519 1.2412175270968133 1.217781348044843 1.208684158649911 1.0777277050475902 1.0244054001298764 0.8284747554648838 0.8800314953145938 0.7313976260918575 1.0 15.685011787528605 2.520244389688368 1.8947058621110515 0.8487163674338593 1.154705031034445 0.5931870675006228 0.10598586302486468 0.21414722450130444 1.5499747246649 0.042368505577888564 0.035310056749363626 331.317510692276 -2.520244389688368 0.30598866360058585 LEVGIQAMEHLIHVLQTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEVGIQAMEHLIHVLQTDR 19 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 221.92 1.477e-19 345170000.0 382180.0 432720.0 394260.0 417580.0 426930.0 445240.0 416260.0 159640.0 480120.0 358020.0 False True 380122.3853441897 447122.8236152367 449768.3810306474 470445.5851845578 481297.0048876369 414461.6067822236 396123.91353237914 171553.14743549467 361800.85927839036 335170.8570836572 1.134115264828388 1.3340146202020087 1.3419077808378403 1.4035993143256387 1.4359750996116805 1.2365681503113972 1.1818566714871286 0.5118378994170002 1.0794520216537993 1.0 18.354537187409942 1.9420252506259992 7.027121249567677 0.8156197767406302 1.3170966098831687 0.6069006852355496 0.16079650358541603 0.1464411190225469 15.073866822483453 0.06698129422554246 0.041822569046464635 87.50346497636897 -1.9420252506259992 0.5014768331425384 LEVNGRES(ph)EEENLNKSEISQVFEIALK ddPTM_BT-474_Trastuzumab_2h_R1 1 LEVNGRESEEENLNKSEISQVFEIALK 27 2 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5;Q5JW28 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 1 LEVNGRES(0.782)EEENLNKS(0.206)EIS(0.012)QVFEIALK 56.383 0.03857 19984000.0 22793.0 21789.0 19388.0 19803.0 21290.0 27641.0 27327.0 25436.0 43954.0 29586.0 True False 22670.285020540377 22514.233693271362 22117.661876483 22310.057769552677 24001.155304283555 25730.242729915193 26005.088610722432 27334.163481390897 33122.125653424904 27697.796150151036 0.8184869618378195 0.8128528916604288 0.7985350804295811 0.805481333193761 0.8665366433550229 0.9289635388472915 0.9388865623007564 0.9868714223041837 1.195839751071469 1.0 14.757483568468798 2.1529206569831287 0.9065910914894677 1.0804286249208124 0.8083536388577535 0.787380875577114 0.05449691127624431 0.2543212406010879 0.39184135864124314 0.04204708048441864 0.022666123330933572 142.2068959854453 -2.1529206569831287 -0.2720749860630589 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(ph)PPGSGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGR 40 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(0.806)PPGS(0.194)GR;LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(0.92)PPGS(0.08)GR;LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(0.916)PPGS(0.084)GR;LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(0.934)PPGS(0.066)GR 159.83 1.1759e-18 730740000.0 935065.0 1076055.0 941163.0 999385.0 970593.0 960251.0 875888.0 797544.0 947886.0 870977.0 True False 930030.713935489 1111870.8401860176 1073670.5696645551 1125907.0385307467 1094192.2653945743 893871.108557714 833517.9512229093 857060.7831263724 714292.1963216607 815390.5021790754 1.1405954710657598 1.363605336602056 1.3167562864605902 1.3808194178394733 1.3419242221615535 1.0962491053904904 1.0222316166246597 1.0511046925809608 0.876012406831774 1.0 19.63713162657974 2.5757098621623666 2.8903111997341773 1.0001344394476246 1.316828783395939 0.8008128862904079 0.07592438063670749 0.11690944983664596 1.8970557335144205 0.026932325859317884 0.024478000309297376 376.45221962978474 -2.5757098621623666 0.3166943439483143 LEVTEIVKPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 LEVTEIVKPSPK 12 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK 119.31 0.00032176 7335660000.0 7830370.0 5265540.0 4591050.0 4045560.0 4436140.0 7183360.0 6835910.0 7010400.0 11963200.0 6760850.0 True False 7788212.1579558905 5440800.315813857 5237429.9338780325 4557727.481199392 5001056.133938203 6686791.231010588 6505230.917587859 7533551.646089903 9015029.658667078 6329366.764745102 1.2304883643868818 0.8596121094008005 0.8274808726602456 0.7200921751898102 0.7901353041815087 1.0564708097271844 1.0277854261538972 1.190253610843374 1.42431778624068 1.0 22.59362973863652 2.1166761751168433 1.6053412508434364 1.2232083258931377 0.8792809780665364 0.3911574576700817 0.16433955090459468 0.3667261444721361 1.8085769419031756 0.09888414502101475 0.05346207461699548 130.8206115831806 -2.1166761751168433 -0.3439273478266013 LEYDAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEYDAYR 7 0 A0A087X1E4;P53365;P53365-2;P53365-3 A0A087X1E4 ARFIP2 Arfaptin-2 0 ; 91.041 0.038841 458060000.0 784650.0 1015020.0 1062570.0 871720.0 630540.0 869530.0 865410.0 685920.0 1273070.0 855010.0 False True 780425.5315828095 1048804.3271074526 1212170.619975994 982079.6626205348 710835.5314966162 809421.4377534522 823546.812112757 737106.833431185 959338.9567640168 800442.5297891102 0.9749925853995108 1.310280611131167 1.514375579587657 1.226920891971195 0.8880531768894109 1.0112174298968193 1.0288643862161273 0.9208741489852968 1.198510725082 1.0 19.610438298209402 3.3634083603779126 6.1483778945234695 1.00089632367648 1.28631552710479 0.4138519526200197 0.14460910501681024 0.18767946052812273 9.40881619899572 0.04023808997371636 0.054657092907119 2308.91720744792 -3.3634083603779126 0.28541920342830984 LEYDDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LEYDDLR 7 0 P15924 P15924 DSP Desmoplakin 0 ; 95.541 0.031151 495790000.0 1737140.0 1847850.0 1613910.0 1602220.0 1529700.0 2119300.0 1785150.0 1561630.0 1908060.0 1845180.0 False True 1727787.431254398 1909354.570201088 1841134.4996428057 1805060.8877206822 1724498.2277577526 1972797.779295587 1698795.4745647581 1678166.7603964633 1437844.1796940877 1727419.0326619244 1.0002132653314038 1.1053221795633477 1.065829694376846 1.0449467405364365 0.9983091509072521 1.14204934760707 0.9834298699065173 0.9714879416434563 0.8323656000700614 1.0 20.72018665972662 1.7827266462433402 2.350950802481811 0.9190677987245249 1.0575769856342965 0.47466216894243385 0.058320199805151386 0.2161132695268481 2.35177124970251 0.033955295647900785 0.015400117933661944 60.635455759501774 -1.7827266462433402 0.13850918690977154 LEYDDLRR ddPTM_BT-474_Trastuzumab_2h_R1 3 LEYDDLRR 8 1 P15924 P15924 DSP Desmoplakin 0 ;; 138.4 0.0023814 899760000.0 1876330.0 1956100.0 1759530.0 1825700.0 1554670.0 1962010.0 2007740.0 1630040.0 2309260.0 2043600.0 False True 1866228.0477598598 2021207.6060125781 2007256.529891074 2056833.4328067603 1752648.009248967 1826380.8667747492 1910617.9458883805 1751681.8619754042 1740173.8154986552 1913175.6983860144 0.9754608786502147 1.0564673216985252 1.0491752177201643 1.0750886259646397 0.9160935980566389 0.954633109920596 0.9986630854135395 0.9155886014301514 0.9095734474187047 1.0 20.867537940420945 3.2372484267684984 24.99990230413774 0.9466024860704851 1.041015623386899 0.5692889521686015 0.03828006748041842 24.268948647636464 462378.09498693014 0.010828581447520146 0.013633071507277748 1726.8253947048129 -3.2372484267684984 0.09441313731641388 LEYGGLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LEYGGLGR 8 0 Q96DG6 Q96DG6 CMBL Carboxymethylenebutenolidase homolog 0 105.04 0.010386 182120000.0 188530.0 267300.0 249280.0 288250.0 254050.0 220470.0 230900.0 192420.0 228820.0 245150.0 False True 187514.97542765195 276196.9189137377 284376.457219398 324742.4204450619 286401.76162767655 205229.42783055626 219730.4848763422 206779.3574889616 172430.37703091154 229504.3171165259 0.8170433470863436 1.2034497755155718 1.2390897948774182 1.414973036346767 1.2479144846859773 0.8942290515884084 0.9574132967824687 0.9009824306876711 0.7513164858827632 1.0 17.808161766306934 2.733720703800484 24.408373496319467 0.9000221934870967 1.2013846677536812 0.4623133456227183 0.15243568757209464 263.89843102823374 1330872.5985976814 0.05004249612226065 0.04860835365512954 541.6524399159156 -2.733720703800484 0.3013624742665846 LFADAVQELLPQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFADAVQELLPQYK 14 0 P33993;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 117.23 0.0021374 0.0 26627.0 41154.0 36758.0 45469.0 38853.0 38635.0 47139.0 33745.0 38095.0 38449.0 False True 26483.64319053781 42523.78601188168 41933.20689373646 51225.37073795838 43800.69925022681 35964.25338700745 44858.70648153271 36263.223253637974 28706.997696847193 35995.151902155005 0.7357558390787692 1.1813753732022954 1.164968188152748 1.4231186154514202 1.2168499627196876 0.9991415923113327 1.2462430108218838 1.0074474293708127 0.7975240047571107 1.0 15.135514986167681 1.5190204873436561 4.882111419360799 0.8979756926754384 1.14895673518024 0.23429983683236022 0.17457364279592807 0.2145485021744707 11.224428034436778 0.10448472931709454 0.04492193096418028 33.03851262082846 -1.5190204873436561 0.2509810425048017 LFAYPDTHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFAYPDTHR 9 0 P04040 P04040 CAT Catalase 0 104.2 0.0032986999999999995 111110000.0 104410.0 126600.0 137970.0 103410.0 64632.0 95556.0 111330.0 77293.0 189760.0 95094.0 False True 103847.8681610414 130813.80446868399 157394.97674326194 116501.6953971339 72862.50209612276 88950.43863462876 105944.54257809956 83060.99614590124 142996.19065372672 89025.01950593069 1.166502054561451 1.4694049514919725 1.767985872025297 1.3086399311529806 0.8184497178489109 0.9991622481891514 1.1900535733220674 0.9330073344198242 1.6062472263114818 1.0 16.4419232262412 3.471831985317219 24.296988221501053 1.0785253891399162 1.4798091337062116 0.33598201196222355 0.23948358661564237 102.05122720668992 468783.02073165745 0.0648386867607864 0.08810628665512522 2963.6846126660657 -3.471831985317219 0.40128374456629534 LFDANKDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LFDANKDR 8 1 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;K7ERC6;K7EPY4;K7EP41;A0A2R8YF08;K7ELR7;K7ENA0;K7ERK8;A0A0J9YXM3;A0A0J9YXH9;K7EIL4;A0A0J9YYI8 P06744 GPI Glucose-6-phosphate isomerase 0 ;;;; 117.89 0.0018168 4202490000.0 9208420.0 10760640.0 10255290.0 9243480.0 7782850.0 11099850.0 11922570.0 8588080.0 17274200.0 11593620.0 False True 9158842.889871648 11118801.39745576 11699145.691421367 10413703.620244639 8773949.814933922 10332543.49573638 11345829.740459654 9228966.138986604 13017204.872420993 10853705.245802533 0.8438448145082674 1.024424484141556 1.077894177745963 0.9594606988495421 0.8083829085304378 0.9519830566370223 1.045341612243196 0.8503055804427464 1.1993328156258116 1.0 23.37168429925075 1.2389094211691953 24.99999998113078 1.0996663840976542 0.9484540069060615 0.29254416124207483 0.09597397605876416 11.531555699762258 827047.5655559971 0.07334520962223806 0.02300997104140507 17.334424238233993 -1.2389094211691953 -0.15121237719159264 LFDDEAS(ph)VDEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFDDEASVDEPR 12 0 A0A2R8Y549;Q8NI35-3;Q8NI35;A0A0X1KG69;A0A087WUZ6;Q8NI35-4;Q8NI35-2;Q8NI35-5;A0A0U1RR46 A0A2R8Y549 INADL InaD-like protein 1 LFDDEAS(1)VDEPR;LFDDEAS(1)VDEPR 146.67 6.8117e-05 318770000.0 393840.0 446690.0 414540.0 405590.0 422220.0 463820.0 408700.0 435900.0 631940.0 409180.0 True False 391719.60919973755 461557.80662019283 472903.62875372753 456937.65241392085 475987.21430599404 431757.21511483914 388929.619614383 468429.0714553503 476206.8545621635 383065.7820833776 1.0225909687607555 1.2049048184620437 1.2345232878325738 1.1928438241828252 1.2425730424608672 1.1271098472086014 1.0153076515973674 1.2228423768568102 1.2431464172347113 1.0 18.54723263508923 LFDDS(ph)DER ddPTM_BT-474_Trastuzumab_2h_R1 2 LFDDSDER 8 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 LFDDS(1)DER;LFDDS(1)DER 153.12 0.00046801 837340000.0 2730900.0 2760800.0 2225500.0 2170800.0 2418100.0 2484600.0 2375000.0 2243500.0 2533500.0 2366900.0 True False 2716197.137831511 2852691.5590611584 2538831.0556072304 2445623.057422861 2726030.7017984088 2312845.4501192886 2260112.1766189383 2410921.3622621656 1909152.8721607123 2215842.4155949596 1.2258078998375905 1.2874072357240274 1.1457633619336363 1.1036989996268325 1.2302457442879404 1.043777045624557 1.0199787497127102 1.088038276230409 0.861592349132869 1.0 21.079423853994854 2.8058077924608638 0.4927666134958124 0.957044856675988 1.2634997308909994 0.6702241337129997 0.06952183722103959 0.6714424493250591 0.3367112928655636 0.061625455732746325 0.08714255452939154 639.4517679842336 -2.8058077924608638 0.3064548742150114 LFDFPGR ddPTM_BT-474_Trastuzumab_2h_R1 6 LFDFPGR 7 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;;;; 154.09 0.0039591 2183295000.0 3159950.0 3871590.0 3284220.0 3634280.0 3495320.0 3469540.0 3290780.0 3285640.0 4109050.0 3578070.0 False True 3142937.1803034535 4000453.532724424 3746609.62904802 4094379.4753688765 3940428.2836152366 3229698.8662186554 3131592.399399608 3530831.140941862 3096429.685949074 3349714.50926015 0.9382701635064513 1.194267010416957 1.1184862526912873 1.2223069948349718 1.176347498487433 0.9641713815581249 0.9348833731180516 1.0540692740175386 0.9243861461593577 1.0 21.67560671157343 2.7338671151016882 24.823068083602482 0.9816682591183313 1.1380052249620571 0.4825972888903861 0.07960625830498042 310.68916100698056 1643174.237823081 0.0249364938420494 0.024207939831132126 541.835074996494 -2.7338671151016882 0.1563369658437258 LFDHPES(ph)PTPNPTEPLFLAQAEVYK ddPTM_BT-474_Trastuzumab_2h_R1 4 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK;LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK;LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK;LFDHPES(0.494)PT(0.494)PNPT(0.012)EPLFLAQAEVYK 276.19 2.9190999999999997e-53 1385169000.0 643964.0 612325.0 578969.0 534925.0 473380.0 657138.0 653377.0 599002.0 826182.0 650905.0 True False 640496.969375126 632705.8674667212 660482.8027112378 602646.4501529034 533662.1370569164 611711.5967964618 621770.6583674746 643702.5709105252 622580.5163716136 609363.6856321926 1.051091465535288 1.0383058301387158 1.0838893394607376 0.9889766396690995 0.875769511114305 1.0038530539637152 1.0203605384236347 1.0563520375237117 1.021689560850199 1.0 19.216944001177 3.7265811025762687 24.665442653919833 0.9981556708602932 1.0558165738830152 0.2824429322742671 0.04544143477048922 965.4660902949678 1987864.9332210226 0.013801325559791864 0.02157556009238972 5328.207169482535 -3.7265811025762687 0.05766090302272198 LFDHPESPT(ph)PNPTEPLFLAQAEVYK ddPTM_BT-474_Trastuzumab_2h_R1 4 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 LFDHPES(0.237)PT(0.763)PNPTEPLFLAQAEVYK;LFDHPES(0.427)PT(0.573)PNPTEPLFLAQAEVYK;LFDHPES(0.176)PT(0.824)PNPTEPLFLAQAEVYK;LFDHPES(0.414)PT(0.586)PNPTEPLFLAQAEVYK 382.02 1.6080999999999994e-120 8799280000.0 1526280.0 1327940.0 1262410.0 1187630.0 1005820.0 1417000.0 1412720.0 1390760.0 1853570.0 1461150.0 True False 1518062.6780656488 1372139.6801433188 1440146.354935574 1337983.8362295516 1133905.2150377873 1319046.1252592092 1344381.3364855181 1494545.573336184 1396782.5100654953 1367898.156046548 1.109777560087588 1.003100760153833 1.0528169429644056 0.9781311790758943 0.828939793525975 0.9642867924257393 0.9828080625322303 1.09258541414784 1.0211158658934287 1.0 20.383529390749647 -0.05344975809855111 7.305994249757235 1.0000000005186704 1.003712172479802 0.000227240238368287 0.07419836552324484 0.0 4.025210483071661e-18 0.07691032055155923 0.018127936431649342 0.8841994530058721 0.05344975809855111 0.003712171961131494 LFDHPESPTPNPTEPLFLAQAEVYK ddPTM_BT-474_Trastuzumab_2h_R1 4 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 313.77 1.4114999999999995e-74 5236060000.0 1778450.0 1612340.0 1592260.0 1557590.0 1371640.0 1950410.0 1999350.0 1823140.0 2334720.0 2026830.0 False True 1768875.0228043706 1666005.762219886 1816436.3678279798 1754780.7342966972 1546310.22365277 1815582.7474712885 1902633.8022412946 1959191.9645173384 1759359.5396451792 1897475.9741435354 0.9322252544477084 0.8780115189452514 0.957290839293955 0.9247973403661953 0.8149300674812121 0.9568409677971227 1.002718257394583 1.0325253079431795 0.9272104435679625 1.0 20.855650187664036 2.486415048624566 15.59771359555134 0.9956023702812911 0.9026813552536731 0.4865823725639279 0.0433171770496755 2.6364584206274047 4426.073005415159 0.014563716105543125 0.01289162512120375 306.4891104270565 -2.486415048624566 -0.09292101502761796 LFDQAFGLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFDQAFGLPR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ; 199.46 6.471300000000001e-07 4809600000.0 3259700.0 4439500.0 3431400.0 3383100.0 2877500.0 2868800.0 4334500.0 3124000.0 3580800.0 3497800.0 False True 3242150.1373867146 4587266.073765578 3914511.293736527 3811400.113122942 3243932.568721272 2670486.608428807 4124823.67560202 3357128.743350571 2698359.8202617243 3274567.4093827573 0.9901002886967127 1.4008769709921038 1.195428526687254 1.1639400374541 0.9906446144386261 0.815523479766197 1.259654531399472 1.0252128979636355 0.8240355084857924 1.0 21.64287289962009 3.3269230100933522 4.028956032921042 1.0004136663446663 1.2106387669372949 0.30545597640281974 0.14784914987658768 0.2788777090602956 8.519723860819525 0.041927171433343235 0.05715776174307615 2122.868095476833 -3.3269230100933522 0.21022510059262856 LFDSTIADEGTWTLEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 LFDSTIADEGTWTLEDR 17 0 Q8WVJ2 Q8WVJ2 NUDCD2 NudC domain-containing protein 2 0 ;; 180.09 2.0458e-09 97713100.0 48886.7 68113.0 52935.2 57658.1 59282.6 63815.1 66133.6 59981.7 67916.0 64356.1 False True 48623.49943902298 70380.10002982205 60388.016038993395 64957.609548181776 66831.88771450082 59403.71234158716 62934.4651131143 64457.83903490107 51179.01182777462 60248.838599970746 0.8070445932055956 1.1681569581302471 1.0023100435171328 1.0781553812095113 1.1092643321847082 0.9859727377652058 1.044575573165403 1.0698602750316315 0.8494605542122345 1.0 15.878645810730852 -0.7021160722481368 6.51592252189885 1.000000000296554 1.025827079038873 0.0 0.10647093309862862 0.0 0.0 0.09328751392522669 0.021988077898854097 0.1985564172188112 0.7021160722481368 0.025827078742319154 LFDSTTLEHQK ddPTM_BT-474_Trastuzumab_2h_R1 3 LFDSTTLEHQK 11 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 ;; 201.09 4.4617e-08 1749180000.0 2290880.0 2277670.0 2242920.0 2077870.0 1779620.0 2245900.0 2442420.0 2001600.0 3521440.0 2411330.0 False True 2278546.1566206976 2353480.8690694124 2558703.6401898735 2340928.128951191 2006244.0583658584 2090646.2192799281 2324270.813649528 2150969.555918854 2653628.2968784766 2257436.8549565244 1.0093510042674392 1.042545603834725 1.1334552435306773 1.0369849875585 0.8887265457551398 0.9261150382521736 1.029606125436581 0.9528370865373682 1.175504994105176 1.0 21.106254202516386 3.4665328027704367 24.807365798736924 0.9873624081613228 1.0640867997237275 0.1264389624803821 0.07764416008299292 339.89972528385266 796337.1274896549 0.021454277533578075 0.02907723199656365 2927.7419987975914 -3.4665328027704367 0.07672439156240474 LFDVCGS(ph)QDFESDLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LFDVCGSQDFESDLDR 16 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38 Q92878-2 RAD50 DNA repair protein RAD50 1 LFDVCGS(1)QDFESDLDR;LFDVCGS(0.999)QDFES(0.001)DLDR;LFDVCGS(1)QDFESDLDR;LFDVCGS(1)QDFESDLDR 281.61 1.662e-35 480463000.0 163057.0 158905.0 140275.0 138496.0 130413.0 149138.0 133713.0 143547.0 174755.0 144478.0 True False 162179.11922933572 164194.05686489912 160024.50070784256 156029.57939968506 147020.3225315891 138828.44109308967 127244.79135673611 154259.20605689634 131688.97184702792 135257.2903461611 1.1990416103581119 1.213938682674189 1.1831118329983932 1.1535761140886518 1.086967823732999 1.0264026488907843 0.9407610564360799 1.1404871830723802 0.9736182908144849 1.0 17.045346831614932 3.228323736058409 1.722100527860013 1.0281298835934283 1.2012078390939342 0.726850224687339 0.04970560777372236 0.20095291378740227 1.2324085838432972 0.0167859542386263 0.02366091030454314 1691.7015065029814 -3.228323736058409 0.17307795550050598 LFDVCGSQDFESDLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFDVCGSQDFESDLDR 16 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 319.58 1.2075999999999996e-57 200927000.0 115024.0 124749.0 118421.0 127446.0 107633.0 109025.0 117337.0 122163.0 137181.0 127932.0 False True 114404.72356436789 128901.19505263705 135093.64746621586 143580.65053266735 121339.42455922728 101488.35836724447 111660.96103913107 131279.42339114472 103374.580681223 119767.27023190433 0.9552252743412036 1.0762639475964242 1.1279679932976279 1.1988304505450729 1.013126744262258 0.8473797404811301 0.9323161563499186 1.0961210281986848 0.8631288037295973 1.0 16.869874179512575 3.0073939382235966 24.988421077995202 0.9608060200665235 1.0931907793688878 0.36932877744438364 0.08646071030338 214.43363250677655 724689.2881127106 0.026355405486825134 0.031440888119111964 1017.1709261605514 -3.0073939382235966 0.13238475930236426 LFDVSEITSAAMVHSLPTAVPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFDVSEITSAAMVHSLPTAVPESPR 25 0 A0A3B3ISF0;Q659C4;Q659C4-9;Q659C4-2;D6RJB0 A0A3B3ISF0 LARP1B La-related protein 1B 1 LFDVSEITSAAMVHSLPTAVPES(1)PR 175.39 1.1827e-12 19491000.0 17395.0 18881.0 18215.0 22465.0 19553.0 21510.0 20044.0 17992.0 23686.0 20915.0 True False 17301.347252766183 19509.442671194483 20779.513672381778 25309.066696611644 22042.95865028917 20023.064329093584 19074.395144484202 19334.65440152479 17848.90267613918 19580.18679376763 0.8836150254844964 0.9963869536425637 1.0612520652252355 1.2925855592280415 1.1257787723100496 1.0226186573187812 0.9741681908037557 0.9874601608846248 0.9115797956442624 1.0 14.25710690777792 2.4447272235130426 3.7162670725059868 0.9702679607244628 1.0793502122404726 0.1928425908454432 0.09897547797294959 0.4043308480689206 12.013370498978988 0.038934208731950866 0.03303534729591704 278.43717802417325 -2.4447272235130426 0.10908225151600981 LFEAEAQDLFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LFEAEAQDLFR 11 0 Q9H223 Q9H223 EHD4 EH domain-containing protein 4 0 ;;; 134.57 0.0003215 234072000.0 296992.0 332211.0 318006.0 322291.0 305871.0 338696.0 346693.0 311430.0 397718.0 351409.0 False True 295393.02807091293 343268.44230920944 362778.480642297 363093.007554759 344821.85881054564 315282.7427246245 329922.13509412616 334670.488009497 299705.72804816073 328981.7767636188 0.897900883680739 1.0434269207435642 1.1027312339642508 1.1036872957727684 1.0481488129912688 0.9583592921961833 1.002858390333222 1.0172918734339673 0.9110101203675679 1.0 18.327648145628643 2.7541187442748707 22.935401789530047 0.9842264630734272 1.0465295092609688 0.19742672214062618 0.060205799358873435 466.5453912800589 687767.6010968548 0.019042283896572768 0.020113036514831286 567.6998039880505 -2.7541187442748707 0.062303046187541566 LFEASIETGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFEASIETGDR 11 0 P28838-2;P28838;H0Y9Q1 P28838-2 LAP3 Cytosol aminopeptidase 0 ; 132.01 0.00044531 160895000.0 125104.0 140103.0 138586.0 137133.0 142880.0 160394.0 141488.0 123974.0 162535.0 146290.0 False True 124430.45396436102 144766.24366094804 158097.70418889393 154494.0237394369 161074.92108389086 149306.34030686368 134643.68490335165 133225.56940721622 122480.42710741707 136953.64695482998 0.9085588936919704 1.0570455543158688 1.154388420492648 1.128075280758256 1.1761272858766336 1.09019616218112 0.9831332563765884 0.9727785449273698 0.8943203034805896 1.0 17.063328158688158 2.1803938292330947 3.7473006375984372 0.9581230867165914 1.0942212385227077 0.4059384832092593 0.07308337955730966 0.23216955776212866 6.623656143192291 0.030588870581334984 0.02221785621790663 151.4934406614846 -2.1803938292330947 0.13609815180611629 LFEAVEEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFEAVEEGR 9 0 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 ; 117.4 0.0026939 201564000.0 240040.0 301080.0 267510.0 262870.0 255340.0 288370.0 269270.0 249520.0 322080.0 302340.0 False True 238747.65131095107 311101.2657932964 305173.08276139764 296149.3150473316 287856.0354812475 268435.6606499636 256244.38138870837 268140.44943688693 242707.69965088685 283044.40235370357 0.8434989327667484 1.0991253075711134 1.078180950492853 1.0462998476021852 1.0169995699880725 0.9483871025808724 0.9053151352150578 0.9473441170612091 0.8574898412850067 1.0 18.110668866824795 2.6899918987940388 3.1972535912758575 0.9252357682979333 1.0276245777596742 0.25225839652067483 0.07283742818669434 0.31606505518881123 6.514905550454186 0.023895988616301083 0.02311500145111891 489.7696832586184 -2.6899918987940388 0.10238880946174089 LFECDRDQMYYNLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFECDRDQMYYNLLK 15 1 P42704 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 113.76 0.0015626 0.0 61312.0 68738.0 62215.0 64166.0 62099.0 107140.0 74528.0 59086.0 93346.0 75284.0 False True 60981.903004403575 71025.90277700158 70974.33121752586 72289.40902091184 70006.93956039009 99733.66398043183 70922.79591539204 63495.29735262865 70342.12907231644 70479.31066612493 0.8652454518644125 1.0077553555179615 1.0070236292994683 1.0256826909582264 0.9932977337424233 1.415077177086632 1.0062924175204833 0.90090690094032 0.9980535905854933 1.0 16.104912193373234 5.4663427354651795 1.116107068446877 1.044247944071947 0.27190260930824045 0.14789456601103101 0.12933682171871827 15.830538830504109 5.024073949307095 0.039820265235020004 21.292493279722756 292646.09641423053 -5.4663427354651795 -0.7723453347637066 LFEDDDS(ph)NEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LFEDDDSNEK 10 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 LFEDDDS(1)NEK;LFEDDDS(1)NEK;LFEDDDS(1)NEK;LFEDDDS(1)NEK 236.39 4.0273e-12 1654690000.0 5583700.0 3651780.0 3165920.0 2910160.0 2775690.0 3929660.0 3927190.0 3974120.0 5387000.0 3892260.0 True False 5553637.979607394 3773327.2897523707 3611654.017330051 3278585.957614571 3129157.6686964184 3658011.853624637 3737216.8163773185 4270689.014572464 4059446.032101741 3643852.634468559 1.5241115754993668 1.0355323522304558 0.9911635786711215 0.8997581094803904 0.8587497856243007 1.0038857825978307 1.0256223813843603 1.1720257219445227 1.1140532944998733 1.0 21.797033183837236 4.738353221882344 5.307342691079607 1.0141172904144298 1.5449409762554787 0.7643694461887245 0.08550191452052852 0.08603490443384919 8.67196716040151 0.02445016892906788 0.16675189566241436 54746.104477231456 -4.738353221882344 0.5308236858410489 LFEDDDS(ph)NEKLFDEEEDSSEKLFDDSDER ddPTM_BT-474_Trastuzumab_2h_R1 1 LFEDDDSNEKLFDEEEDSSEKLFDDSDER 29 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 LFEDDDS(0.996)NEKLFDEEEDS(0.002)S(0.002)EKLFDDSDER 69.094 0.004425999999999999 24745000.0 30457.0 21896.0 17993.0 16712.0 19072.0 29474.0 30234.0 30576.0 54355.0 27917.0 True False 30293.02289609083 22624.795123588498 20526.25800204037 18827.73748648003 21500.706151399536 27436.531754333075 28771.465914904005 32857.736381782015 40959.938569684426 26135.313159053818 1.1590839838701796 0.8656791286907077 0.7853840463713612 0.7203945624029268 0.8226687784665493 1.0497877560280346 1.100865550751473 1.2572160961614272 1.5672258572304518 1.0 14.673712825639189 2.184797861683508 1.6164010150432795 1.2985757513049971 0.8616523549193161 0.5042942493449653 0.17084464446326544 0.29194487065943897 1.4896655543748383 0.09636433348421498 0.055752330615231334 153.03749971193432 -2.184797861683508 -0.436923396385681 LFEELAMDVYDEVDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 LFEELAMDVYDEVDRR 16 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 0 ;;;; 228.73 6.1456e-15 192898600.0 56163.5 79467.79999999999 69419.0 63501.6 77700.7 80636.50000000001 73603.8 58883.799999999996 80345.90000000001 69733.2 False True 55861.12195635146 82112.83768370052 79192.59179923532 71540.89604903419 87595.42357686916 75062.28855290358 70043.30300017906 63278.00816187781 60545.72952490134 65282.7674744039 0.8556794406464694 1.2578026462480372 1.2130703838541341 1.0958618762154035 1.3417847766826614 1.1498024893373897 1.0729217787472272 0.9692911408311218 0.9274381566106268 1.0 15.994414597045274 1.9508396347131312 2.431212755397465 0.9602833750836918 1.1656221842697518 0.3209870065645426 0.12070687658734579 0.322164315849551 3.4973029633542865 0.0644847420360007 0.033961301431326966 89.29756873611186 -1.9508396347131312 0.20533880918606007 LFEELGK ddPTM_BT-474_Trastuzumab_2h_R1 3 LFEELGK 7 0 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;; 121.52 0.010306 176226000.0 363474.0 357853.0 322292.0 321715.0 303286.0 386800.0 379732.0 350999.0 489190.0 405835.0 False True 361517.09636975796 369763.9207782933 367667.9121877176 362444.086013818 341907.6743830407 360061.4264292604 361362.9124428897 377192.32771680766 368635.6793101631 379934.2628471758 0.9515253866829432 0.973231311141387 0.9677145447016654 0.9539652551936516 0.8999127160073191 0.9476940135143614 0.9511195693036081 0.9927831327719157 0.9702617409329112 1.0 18.535390295970622 1.7696332694183976 7.004487713761662 0.9859552643574703 0.9490795767578107 0.4428843925261652 0.019687046141650164 0.18517076595540008 24.455353950121356 0.010106859271936356 0.005571651318086366 58.8346628948444 -1.7696332694183976 -0.036875687599659535 LFEELVR ddPTM_BT-474_Trastuzumab_2h_R1 6 LFEELVR 7 0 P14618-2;H3BTN5;H3BR70 P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;; 168.74 0.0024144 380091000.0 596881.0 666340.0 600386.0 589094.0 587991.0 742140.0 678654.0 575589.0 709698.0 678003.0 False True 593667.4590157127 688518.7240889639 684915.1301513365 663673.2399988313 662868.1685542979 690837.6086096463 645824.9133099574 618542.3739617193 534802.4373659808 634732.2680724285 0.9353037317900624 1.084738808348086 1.0790614635542395 1.0455955579732719 1.0443271941527617 1.0883921353291206 1.0174761010200652 0.974493349519042 0.8425638088167201 1.0 19.275788661637208 1.6321435301041816 2.862470288372349 0.9191241326919108 1.0483051946573205 0.43883357361214903 0.05502920584081105 0.17725658544216877 3.3906141136551984 0.03380022760013721 0.013927459234519988 42.86901749236366 -1.6321435301041816 0.12918106196540968 LFEEPEDPSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFEEPEDPSNR 11 0 P63151;P63151-2;A0A590UJY3;A0A590UJJ1;E5RFR9;Q9Y2T4;Q9Y2T4-2;Q9Y2T4-4;Q9Y2T4-3 P63151 PPP2R2A;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform 0 101.65 0.007277199999999998 196140000.0 167370.0 220720.0 210850.0 191430.0 236020.0 232690.0 221520.0 205780.0 250880.0 222320.0 False True 166468.89851655523 228066.53177194242 240535.84725894613 215665.01837224004 266075.7479998595 216604.68799334188 210804.2313114219 221136.348529667 189053.98561976678 208131.34726227203 0.7998261708592277 1.095781749226605 1.1556925490701806 1.0361967152428733 1.2784030445186623 1.04071150666407 1.0128422944660118 1.0624845869613626 0.9083397965109727 1.0 17.667134744334447 1.2579449441679214 21.689816419897173 0.9541701997303454 1.0676748846062052 0.11613993238257991 0.11560218384642225 89.31233448205194 99938.5367255466 0.07603112766076124 0.027605443635225026 18.111104822531267 -1.2579449441679214 0.11350468487585974 LFEES(ph)DDKEDEDADGKEVEDADEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFEESDDKEDEDADGKEVEDADEK 24 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 LFEES(1)DDKEDEDADGKEVEDADEK;LFEES(1)DDKEDEDADGKEVEDADEK 213.44 4.2523000000000006e-26 629600000.0 746720.0 374079.0 314729.0 202280.0 229388.0 478970.0 474740.0 418590.0 938440.0 377564.0 True False 742699.742488392 386529.99337946903 359040.1075264921 227888.62725976415 258599.20211080325 445859.93127410254 451775.0125170842 449827.31135695113 707174.0364517471 353467.5422711971 2.1011822972943794 1.093537445887761 1.0157654228150303 0.6447229236253811 0.7316066432837945 1.261388608439803 1.2781230480575807 1.2726127792854662 2.0006760222107456 1.0 18.43121821774792 1.8256766765430594 1.8532352477046032 1.4880533851819349 1.0968567642358984 0.07447639377448045 0.43721456126350056 0.7647921814652578 5.0276451272547575 0.2991547515141782 0.131078799849233 66.93860794708861 -1.8256766765430594 -0.39119662094603647 LFEFAGYDVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFEFAGYDVLR 11 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 81.33800000000002 0.051061 214920000.0 109880.0 195670.0 189270.0 210010.0 203450.0 147090.0 153530.0 128830.0 133690.0 161280.0 False True 109288.41828881559 202182.7576649873 215917.5708356683 236597.24446718983 229358.15155737396 136922.01451261627 146103.16735844465 138443.94878548474 100743.89085421964 150986.97232124524 0.7238268084235088 1.3390741900222762 1.4300410659025231 1.567004363553944 1.5190592143895927 0.9068465471398164 0.9676541301032938 0.9169264517135061 0.6672356515625293 1.0 17.204064548633802 2.7207878515391832 22.87832097715107 0.8955435056424255 1.3373964417752442 0.4531735984664804 0.2322919074669795 251.73040098711107 324043.407263043 0.07733192566055716 0.07310679647883271 525.7603750271164 -2.7207878515391832 0.44185293613281873 LFEGNALLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LFEGNALLR 9 0 P46781;B5MCT8;C9JM19 P46781 RPS9 40S ribosomal protein S9 0 ;; 100.09 0.011388 1005617000.0 996750.0 1091900.0 964006.0 949688.0 887488.0 1084840.0 1020487.0 917904.0 1436940.0 1154210.0 False True 991383.6087493366 1128243.2314325108 1099729.6655096402 1069918.4034262958 1000504.3362465015 1009847.5642386752 971122.1451710872 986402.6575020681 1082825.3910095172 1080547.3296311044 0.9174828177936379 1.0441405022190835 1.017752425416742 0.9901633867269496 0.9259236581409819 0.9345704131103948 0.8987317061832224 0.9128731620102407 1.0021082476592587 1.0 20.043330835162156 3.295491827700477 5.751685553724586 0.935804042586861 0.9987659887723644 0.18742109602423107 0.04424995490131013 0.2394295122943141 16.21474098228362 0.012095077947552518 0.016285039499621363 1974.6577211057881 -3.295491827700477 0.06296194618550344 LFEHYYQELK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFEHYYQELK 10 0 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 143.96 3.305e-05 2681900000.0 5038500.0 5149200.0 4769800.0 4268900.0 3903700.0 5191600.0 5601000.0 4622200.0 7526300.0 5268700.0 False True 5011373.275829973 5320588.009242869 5441346.380155176 4809342.3022998255 4400813.055957342 4832716.911711871 5330058.23210218 4967132.035056026 5671544.212253077 4932447.055238997 1.0160014329007636 1.078691357384487 1.1031738038375196 0.9750418501079671 0.8922169881748695 0.9797807979669649 1.0806113420803698 1.0070320024581285 1.1498439108898388 1.0 22.233872134504313 -0.9119180661513667 7.719060585529689 1.0000000018146222 1.0281828401290098 0.015644406579924053 0.07069236092290422 0.0 0.0 0.07053049175525497 0.016624196333520896 0.12248472567338908 0.9119180661513667 0.028182838314387615 LFELLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFELLEK 7 0 O60264;A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 O60264 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 0 103.92 0.043353 0.0 86118.0 94417.0 73691.0 72376.0 94163.0 115930.0 83000.0 93965.0 134350.0 91898.0 False True 85654.35025660922 97559.61276871822 84066.05226634562 81538.7941791216 106154.09990217257 107916.03196986612 78984.97290920926 100977.1454446018 101241.24269776663 86032.99096216394 0.9955988894339238 1.133979089621835 0.97713739027528 0.9477619372198879 1.2338766642305579 1.2543563900658299 0.9180777283907949 1.1737026030980382 1.1767723237971706 1.0 16.39260237390572 3.249428018029091 24.998822330114624 1.1289130373663823 1.0196106177240798 0.21122440883287164 0.10618054274274141 360.091792613299 828332.2052876975 0.02964569305747262 0.039745160767709245 1775.9388915888196 -3.249428018029091 -0.10930241964230247 LFENLR ddPTM_BT-474_Trastuzumab_2h_R1 7 LFENLR 6 0 Q92769;Q92769-3;Q13547;Q96G03 Q92769;Q13547;Q96G03 HDAC2;HDAC1;PGM2 Histone deacetylase 2;Histone deacetylase 1;Phosphoglucomutase-2 0 ;;;;;; 151.7 0.024083 2698462000.0 1697003.0 2046967.0 1895732.0 1736400.0 1561648.0 1745283.0 1902187.0 1505576.0 2199042.0 1754325.0 False True 1687866.524402759 2115099.059177316 2162634.587602069 1956228.0619628956 1760514.6161871187 1624635.6941642691 1810170.9477500003 1617929.7262800192 1657117.5647531247 1642362.4765468028 1.027706458535044 1.2878393712601612 1.3167827556247995 1.1911061595099397 1.0719403550236608 0.9892065347110185 1.1021750518533693 0.985123411782912 1.0089840631511173 1.0 20.647341140656916 3.1944515044268735 3.1516619098361285 1.0214273627905346 1.223308825573646 0.5650223876163191 0.07812453647856203 0.1719000966981736 3.4933169400899544 0.023143411294054672 0.02965831715143251 1564.7735787396289 -3.1944515044268735 0.20188146278311137 LFENQLVGPESIAHIGDVMFTGTADGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFENQLVGPESIAHIGDVMFTGTADGR 27 0 Q9HDC9;H0Y512;Q9HDC9-2 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein 0 126.75 6.7079e-05 191930000.0 170960.0 209930.0 243340.0 187020.0 249130.0 250980.0 229830.0 270600.0 266400.0 272770.0 False True 170039.57035544177 216917.39314463528 277600.1568508035 210696.71282440727 280855.2287908012 233630.34334337062 218712.2448641394 290793.54607895814 200749.28957711245 255361.58506985402 0.6658776429075169 0.849451937280612 1.087086598302819 0.8250916549048335 1.0998335114264481 0.9149001142026165 0.8564806049598681 1.138752118880417 0.7861373883710723 1.0 17.962181986174404 4.580308139744184 3.398288379665787 0.9701968011123215 0.6668701605300872 0.3845715498560033 0.11502850302192934 0.24180821556242918 4.685322604840764 0.026127204256495257 0.14644406570278712 38045.92432529376 -4.580308139744184 -0.30332664058223435 LFEVLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LFEVLEER 8 0 Q9NQ86-4;Q9NQ86;E9PBG3 Q9NQ86-4 TRIM36 E3 ubiquitin-protein ligase TRIM36 0 ; 84.476 0.040538 41887000.0 64845.0 70925.0 69865.0 67298.0 63416.0 68912.0 74324.0 59869.0 79873.0 70787.0 False True 64495.88172495679 73285.69574993206 79701.38472253377 75817.91989978058 71491.65170391946 64148.275641399196 70728.66417474781 64336.72878862204 60189.36939336599 66269.31305620032 0.9732390264896883 1.105876798327175 1.202689164062139 1.1440879104251838 1.0788047801746532 0.9679936713241262 1.0672913436535203 0.9708374181283675 0.9082540110582076 1.0 16.0160533441494 2.8689352717841876 3.95748860457909 0.9873637589907344 1.1132675885269085 0.4528655132939472 0.06500755870435186 0.22731886575615728 6.1522199108505555 0.021259780666180467 0.022782647439594374 739.4950508567845 -2.8689352717841876 0.12590382953617418 LFFAGEHTIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFFAGEHTIR 10 0 R4GMQ1;O60341;O60341-2;R4GMP9 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 ; 210.27 8.0174e-08 940950000.0 539420.0 647590.0 620550.0 588230.0 607540.0 603220.0 605790.0 571530.0 725170.0 651960.0 False True 536515.8226551965 669144.6416735785 707918.0460827079 662699.8576874187 684906.617828296 561520.8212271417 576485.6233574676 614180.4707705354 546461.5702801594 610351.3546289625 0.879027823213973 1.096326954300539 1.1598533217200067 1.0857678166214266 1.122151384827607 0.919996026827031 0.944514366987713 1.006273626022999 0.8953229416724369 1.0 19.219280457526366 2.736014500440331 24.993258289162753 0.9572653597216543 1.076185000484635 0.36173979272559664 0.07622223903467437 251.31796171495319 2466981.6968713114 0.02430127237625109 0.02386315279046349 544.5208332715262 -2.736014500440331 0.11891964076298067 LFGHAQLIQSDDDIGDHQPFANAHDVLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFGHAQLIQSDDDIGDHQPFANAHDVLAR 29 0 Q9NQ34;Q9NQ34-2 Q9NQ34 TMEM9B Transmembrane protein 9B 0 71.528 0.0025722 86410000.0 19346.0 23227.0 26724.0 21781.0 23353.0 22603.0 23906.0 17684.0 18808.0 25666.0 False True 19241.843285542654 24000.096653981993 30486.50691082792 24538.472366743772 26326.866125924545 21040.50781173884 22749.57545021152 19003.66987753248 14173.020414288021 24027.973906231884 0.8008100624976998 0.9988398001280224 1.2687922431495964 1.0212460052813477 1.0956756582416807 0.8756671658562849 0.9467954118391647 0.7908977241149616 0.5898549944159925 1.0 14.552427381797225 2.1979077674731577 1.444583096577061 0.7792812777874146 1.0430590339558237 0.3058797475574324 0.14772210686331358 0.4627556582403042 1.8742648830813502 0.08866370691044113 0.05032576693918734 157.72762628548435 -2.1979077674731577 0.26377775616840904 LFGPYVWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFGPYVWGR 9 0 Q9H4A4;C9JMZ3;H7C2T3 Q9H4A4 RNPEP Aminopeptidase B 0 ; 144.29 0.0002324 884190000.0 274150.0 275930.0 281640.0 252800.0 232940.0 253840.0 266870.0 232430.0 356730.0 274760.0 False True 272674.00686092844 285114.16324679245 321292.46394123515 284804.454079832 262603.52825644973 236292.6382750868 253960.47855759817 249775.1068556253 268818.6714370996 257224.58156612923 1.06006200962884 1.1084250249756677 1.2490737159917777 1.107220983102707 1.020911479989861 0.9186238610493722 0.9873102990831695 0.9710390248663354 1.0450738020463632 1.0 17.972668994275924 3.2200915810226522 3.4003663517149225 0.9814185062137026 1.1412725169292977 0.6319726580836887 0.053271618508779955 0.1441133710399758 3.4837543394131 0.01597529064782807 0.020663947742662208 1659.936906570806 -3.2200915810226522 0.15985401071559502 LFHEVVQAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFHEVVQAFR 10 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 0 ; 150.81 2.0913e-05 588010000.0 186991.0 271080.0 269400.0 260260.0 197759.0 208434.0 231537.0 171030.0 292052.0 218009.0 False True 185984.26123265314 280102.7339286794 307329.1783332231 293208.8893149412 222942.4364405733 194025.4481808598 220336.6707527662 183793.1270727428 220079.69789630148 204095.47897310468 0.9112610537402536 1.3724102823737256 1.5058108091346911 1.4366260869187588 1.0923438263419458 0.950660196674068 1.0795764407000987 0.9005252247501411 1.078317359128289 1.0 17.638884699260544 3.0777704723687074 5.146769571259973 0.9964911030790906 1.323790185841543 0.4579133844431733 0.15620976186942714 0.17584921584101337 8.301141777068755 0.04660170886377189 0.05592701513687286 1196.1082127833222 -3.0777704723687074 0.32729908276245245 LFHTAPNVPHYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFHTAPNVPHYAK 13 0 P53582;H0Y955 P53582 METAP1 Methionine aminopeptidase 1 0 ; 186.17 4.6477e-06 906620000.0 851950.0 965190.0 909010.0 825000.0 757240.0 909210.0 938830.0 663470.0 1264000.0 968270.0 False True 847363.1958605434 997315.7656803249 1036990.7067434391 929444.9154108452 853670.0254868797 846358.4527501235 893415.2062211185 712981.5004323956 952504.1367322437 906474.1796223467 0.9347902178676176 1.1002142014633274 1.1439826197536789 1.0253407502440595 0.9417477570541877 0.9336818100022789 0.9855936620206118 0.7865436395876565 1.050779115549738 1.0 19.789906400681673 3.3077854360940133 3.501820435576151 0.9295799273626696 1.0663617571468953 0.25161514786715933 0.08246205551790049 0.2575616428812235 6.3134666550553105 0.02395275315177412 0.03257514215317525 2031.3531695938498 -3.3077854360940133 0.1367818297842257 LFIGGLNTETNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFIGGLNTETNEK 13 0 P38159;P38159-2;H3BT71;H0Y6E7;H3BR27;P38159-3;H3BNC1;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 191.52 8.1371e-06 137420000.0 231700.0 210730.0 182900.0 169450.0 185650.0 246300.0 230830.0 237910.0 313620.0 254600.0 False True 230452.55294429004 217744.02066102508 208650.7302047012 190902.3526258999 209291.42706623938 229273.86072783597 219663.87104376822 255664.05228250145 236332.5532926947 238351.21002597356 0.9668612671157709 0.9135427533063378 0.8753919486373245 0.8009288167871979 0.8780799855953427 0.9619160762928436 0.9215974654369535 1.0726358479767788 0.991530746862754 1.0 17.862729423922605 2.1516996792047642 1.6817703522909087 1.0249959206216015 0.8865718137157768 0.5361545292730874 0.04977187603917555 0.2745039343222613 1.5062411103501978 0.029575139931079575 0.01676853475642622 141.80765624944635 -2.1516996792047642 -0.13842410690582474 LFIGGLS(ph)FETTDDSLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LFIGGLSFETTDDSLR 16 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 LFIGGLS(1)FETTDDSLR;LFIGGLS(1)FETTDDSLR;LFIGGLS(1)FETTDDSLR;LFIGGLS(0.999)FETTDDSLR;LFIGGLS(1)FETTDDSLR;LFIGGLS(1)FETTDDSLR 292.27 1.5304e-45 490327000.0 158669.0 185152.0 142647.0 159794.0 126058.0 153379.0 161869.0 146279.0 140506.0 168690.0 True False 157814.74373378302 191314.67239325232 162730.45769004928 180023.90401595226 142110.73909569636 142776.2707453298 154038.77807037075 157195.0817697112 105880.17898394034 157924.0597772251 0.9993077936091797 1.2114346139728773 1.0304348679967086 1.1399396917094342 0.8998675648040221 0.9040818159483521 0.9753977847812733 0.9953839965326231 0.6704499563480052 1.0 17.268871457395846 3.2341096392696884 24.999298880259442 0.917780973558913 1.0989443231525367 0.4401436144364337 0.1033144590420477 105.57514528542188 592972.4589620226 0.028560132874570397 0.035254873391347925 1714.3900570769297 -3.2341096392696884 0.18116334959362368 LFIGGLS(ph)FETTDESLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LFIGGLSFETTDESLR 16 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;F8W646 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 1 LFIGGLS(0.983)FET(0.007)T(0.01)DESLR;LFIGGLS(0.991)FET(0.004)T(0.004)DESLR;LFIGGLS(1)FETTDESLR;LFIGGLS(1)FETTDESLR;LFIGGLS(1)FETTDESLR;LFIGGLS(1)FETTDESLR 290.62 1.6938e-45 295572000.0 157205.0 192036.0 152400.0 171189.0 141559.0 182150.0 167191.0 147894.0 170214.0 160621.0 True False 156358.62574711742 198427.80217178643 173856.59531545322 192861.50984759638 159585.69956407134 169558.39923497877 159103.33259835647 158930.60127051512 128267.0404507455 150370.03026544338 1.0398257250537395 1.319596742924825 1.1561917957225236 1.2825794442359568 1.0612866093220825 1.1276076684673322 1.0580787429349883 1.0569300344620536 0.85300934118534 1.0 17.198157531506464 2.102657453887986 0.8458195170900189 0.9465189168111781 1.1964502679089268 0.5065040837787907 0.0902402613977015 0.47123102716558635 0.6297107737989318 0.06961989377627417 0.037135695879653964 126.66524103413234 -2.102657453887986 0.24993135109774878 LFIGGLS(ph)FETTEESLR ddPTM_BT-474_Trastuzumab_2h_R1 7 LFIGGLSFETTEESLR 16 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 LFIGGLS(0.998)FET(0.002)TEESLR;LFIGGLS(0.999)FET(0.001)TEESLR;LFIGGLS(0.997)FET(0.002)T(0.001)EESLR;LFIGGLS(1)FETTEESLR;LFIGGLS(0.999)FET(0.001)TEESLR;LFIGGLS(0.997)FET(0.003)TEESLR;LFIGGLS(0.985)FET(0.015)TEESLR 270.79 4.0892e-35 1169824400.0 332487.7 359691.6 264968.8 321607.4 255138.6 336015.6 322096.6 290618.1 297188.4 331164.6 True False 330697.62316605623 371663.71746783657 302274.10388990334 362322.8638648508 287628.9883850387 312787.6324676416 306515.55692949897 312305.49835081026 223950.30094053564 310029.3917037215 1.0666653937188197 1.1988015569279178 0.9749853142271444 1.168672627694291 0.9277474848575336 1.0088967073372064 0.9886661237022957 1.0073415834369146 0.7223518380300955 1.0 18.24204546817878 2.9102019859512014 0.6037153303530173 0.9130831444617165 1.1246121933816569 0.34992722981117996 0.10044521178050465 0.9801860618629075 0.7734064756640008 0.0737316808180659 0.09797166769902466 813.2086433037259 -2.9102019859512014 0.2115290489199404 LFIGGLSFETTDDSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LFIGGLSFETTDDSLR 16 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;; 251.03 8.7256e-21 886996000.0 239052.0 254227.0 221145.9 241562.0 216152.0 252263.0 233604.0 227370.0 296137.0 279119.0 False True 237764.9705931739 262688.79201153334 252281.32048537885 272143.7244320902 243677.67596672164 234824.65257322823 222303.6820660591 244337.50396146585 223158.00438249757 261305.38645420168 0.9099122441352595 1.005294209874905 0.9654654422119826 1.0414776676629591 0.9325398120311247 0.8986598238930117 0.850742822727926 0.9350649340873433 0.8540122628570839 1.0 17.995377338592142 3.0092233101504027 24.25504923988397 0.9030207806584787 0.9819516354878726 0.31808478454666755 0.05013514452030841 145.87184333533673 383602.40919651464 0.013545228595300125 0.01616609738414247 1021.4645762045434 -3.0092233101504027 0.07893085482939388 LFIGGLSFETTDDSLREHFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFIGGLSFETTDDSLREHFEK 21 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 237.31 4.4662e-30 574800000.0 342220.0 566310.0 620970.0 772060.0 712190.0 665170.0 826600.0 570400.0 1110470.0 754610.0 False True 340377.52554421633 585159.2860083756 708397.1784320025 869802.7168389057 802883.1750191499 619188.3635417568 786614.2000813531 612966.1444325112 836809.5480356453 706450.1437458751 0.48181393769615716 0.8283093877023395 1.0027560822279737 1.231230150548022 1.1365036614784294 0.8764785017362694 1.1134744709802404 0.8676707760045526 1.1845273943870316 1.0 19.430228223377362 4.62313649629144 2.064975603416992 1.0449782300612727 0.3989620322397988 0.7051213858354037 0.1141794253520161 0.30142724826419154 1.7082304376267388 0.0298684050723646 0.3326654692132883 41989.09325921911 -4.62313649629144 -0.6460161978214738 down LFIGGLSFETTDESLR ddPTM_BT-474_Trastuzumab_2h_R1 5 LFIGGLSFETTDESLR 16 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;F8W646 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;;;; 227.93 1.0639e-14 1509518000.0 327361.0 414766.0 405049.0 415156.0 388302.0 506035.0 456742.0 466900.0 456501.0 505550.0 False True 325598.52474922634 428571.2355786579 462076.37845097814 467714.70703309594 437749.95805372996 471053.99152826006 434647.64453612093 501742.4488701605 344002.4453500046 473285.3661768695 0.6879539238226696 0.9055239527910912 0.9763166399662091 0.9882298090288053 0.9249175853244959 0.9952853504289935 0.9183627375744607 1.060126690421813 0.7268393868350641 1.0 18.85235078956095 4.727132903276112 2.933227930926183 0.956646739274296 0.6459082395484267 0.4586953625578992 0.08417519017587863 0.3052379781003675 3.8519352806621106 0.019121251246757964 0.22100784926865652 53349.81321959433 -4.727132903276112 -0.3107384997258693 LFIGGLSFETTEESLR ddPTM_BT-474_Trastuzumab_2h_R1 9 LFIGGLSFETTEESLR 16 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;; 395.42 2.3994999999999983e-121 2633148100.0 302938.3 340385.9 311331.1 311729.0 314536.1 323394.7 348022.8 280665.7 354583.0 332610.0 False True 301307.3138524092 351715.43891387794 355163.8127415681 351193.8594377055 354590.40793347376 301039.1855782393 331187.6075877973 301610.3997255465 267200.7708187731 311382.5450382521 0.9676435582328317 1.1295284354191117 1.1406028321142332 1.1278533913792848 1.1387613518603419 0.9667824686231461 1.0636036375998925 0.9686169136054009 0.8581109476960198 1.0 18.24832854893549 2.104188521528489 1.14576381475012 0.9356922258853753 1.1016790922032575 0.4592554436693983 0.06834936820547702 0.4226367058689478 1.0379949555766605 0.04895941259148692 0.024669524194718018 127.11257644591566 -2.104188521528489 0.1659868663178823 LFIVDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFIVDAR 7 0 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 92.692 0.036019 191880000.0 411500.0 453600.0 339450.0 406000.0 379470.0 428000.0 286190.0 355790.0 465560.0 392950.0 False True 409284.52972194756 468697.80179300957 387241.6094477079 457399.55837188225 427793.25520509493 398413.367403629 272345.8963480313 382340.85646501277 350828.9761843861 367871.59457857953 1.112574430191625 1.274079892822203 1.0526542825121301 1.2433674279631803 1.1628874354791092 1.0830229168958725 0.7403286917545807 1.0393323705871031 0.9536723719761053 1.0 18.48884275650269 2.4676379447515817 24.99280773415007 0.9369904106070478 1.167635133077821 0.5879911781768287 0.09313371549694478 136.98697903699025 361019.6801487045 0.03056667111255914 0.025604030607621484 293.5201662628162 -2.4676379447515817 0.23064472247077317 LFKDDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFKDDIR 7 1 Q9UBT2;Q9UBT2-2;K7EPL2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 79.469 0.029677 1052100000.0 2009400.0 2694300.0 2175500.0 2286600.0 2120600.0 2538700.0 2639500.0 2411100.0 3344300.0 2732800.0 False True 1998581.6136653293 2783978.146761255 2481791.490215018 2576083.325549617 2390645.8402190567 2363205.6444569905 2511817.3011308187 2591028.5253177183 2520142.076324084 2558390.3643322075 0.7811871251270133 1.088175669191879 0.9700597394419974 1.0069156612939432 0.93443356946158 0.9237079991402468 0.9817959511376031 1.0127573029669497 0.9850498623895079 1.0 21.286804979641737 2.004074518356767 24.442515796895076 0.999834062787291 0.959105326403016 0.07811040078507692 0.0727785295562881 261.8007308944912 1570497.1654700744 0.025994571461741427 0.01911415781746161 100.94260734470092 -2.004074518356767 -0.04072873638427499 LFLDGEEEKEWAFEESK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFLDGEEEKEWAFEESK 17 1 Q9NRN7;E9PLW6 Q9NRN7 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0 100.77 0.0011413 199530000.0 163120.0 152940.0 114710.0 124890.0 95496.0 178290.0 157190.0 167060.0 275450.0 173770.0 False True 162241.78004433584 158030.51544581752 130860.17092280606 140701.0611947397 107656.84955086235 165965.2319495161 149586.11917588676 179526.86551349098 207569.03834089937 162679.84982801805 0.9973071662892158 0.9714203425493956 0.8044030718072882 0.8648954455237456 0.6617712621733733 1.0201953845234755 0.9195122772367093 1.1035593265132915 1.2759357631589732 1.0 17.311676038578696 1.8067019895447132 2.0103415082477616 1.1530698711303022 0.8754253212152543 0.46413130700449845 0.11596833892786908 0.26270363683129017 2.054792465923693 0.07644842642186829 0.03375173401469891 64.07697330703722 -1.8067019895447132 -0.27764454991504794 LFLEFER ddPTM_BT-474_Trastuzumab_2h_R1 3 LFLEFER 7 0 O43663-2;O43663-4;O43663;O43663-3;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 0 ;; 167.82 0.0024937 158361000.0 204840.0 274788.0 264633.0 253735.0 184683.0 218078.0 258718.0 192571.0 333070.0 229901.0 False True 203737.16419986336 283934.15246714634 301891.0261687294 285857.8249839644 208201.2853480978 203002.78116039402 246202.82194126258 206941.62587572407 250989.3614093425 215228.52135185152 0.9466085764107336 1.319221777317218 1.402653441433088 1.3281595914356044 0.9673498848590529 0.9431964680393307 1.143913550094854 0.9614972243266022 1.16615288639664 1.0 17.715509746041313 3.238166653807403 24.99999869791867 1.0276881652760643 1.2651289725815946 0.39294431182085976 0.1326180325580351 10.122892570558323 642396.9395842921 0.03752062144855495 0.047553665614267666 1730.4802769323544 -3.238166653807403 0.2374408073055303 LFLELEPQVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFLELEPQVR 10 0 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;Q13098-6 Q13098-7 GPS1 COP9 signalosome complex subunit 1 0 ; 98.033 0.013151 20541200.0 31363.0 41216.0 39910.0 45438.0 40859.0 41240.0 43160.0 34873.0 45152.0 44524.0 False True 31194.145092756888 42587.84964440188 45528.98109606135 51190.44614113688 46062.15145973327 38389.17586851787 41072.18591278882 37475.400341505905 34024.89460580245 41682.440201085796 0.7483761733302817 1.0217216036044958 1.09228204674244 1.2281057897326129 1.1050732931545928 0.9209915658325076 0.9853594394821183 0.8990692522010671 0.8162884524432457 1.0 15.34715211884904 2.72217327351963 22.837480880021875 0.9217132092491436 1.0515992232441538 0.17604701004871426 0.12260234350890487 446.0407243857476 621601.8921566764 0.041621529640352956 0.03938663694638035 527.440255992042 -2.72217327351963 0.1298860139950102 LFLGPYKGRS(ph)TELIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFLGPYKGRSTELIPR 16 2 O60502;O60502-3;O60502-2;O60502-4;H7C3X0 O60502 MGEA5 Protein O-GlcNAcase 1 LFLGPY(0.296)KGRS(0.352)T(0.352)ELIPR 58.07100000000001 0.089041 286890000.0 106420.0 117900.0 110780.0 110820.0 100420.0 124150.0 122440.0 115730.0 161070.0 125720.0 True False 105847.04654437344 121824.23022794483 126376.86108297862 124849.80063736926 113207.89176402803 115567.80271766458 116517.10943377818 124366.3602650325 121376.45672742282 117696.4419656927 0.8993223990171832 1.0350714787406685 1.0737526043464947 1.0607780367206145 0.9618633314083271 0.9819141580452483 0.9899798794915289 1.0566705177144098 1.0312670009413096 1.0 16.844711181932635 4.7420356377860005 24.680688403775065 1.0229072150416842 0.8993223430644226 0.518705047799952 0.03520370141921555 248.27131980799322 1763208.4705716937 0.009172477609975978 0.06703792394862763 55212.274408136385 -4.7420356377860005 -0.12358487197726165 LFNEHIEALTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFNEHIEALTK 11 0 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 ; 126.76 0.00030066 726160000.0 1897480.0 1992860.0 1804340.0 1778490.0 1671560.0 2211560.0 2155600.0 1943970.0 2791200.0 2198360.0 False True 1887264.1785098452 2059191.1403906895 2058375.3883955742 2003646.6516473095 1884423.2578876556 2058680.062652265 2051325.3928083286 2089038.9126796436 2103346.160163795 2058058.7826893136 0.9170117949904778 1.0005502066854943 1.0001538370569993 0.9735614300720301 0.9156314065165989 1.0003018766850476 0.996728281068733 1.0150530831533624 1.0220048998869233 1.0 20.972852758690767 2.502985655668371 24.460538337834855 1.0083991247728972 0.9655462350538857 0.39753935018716724 0.027875501154713968 640.4425872755374 605679.8180815261 0.009235848700625444 0.008673562277586686 318.4092352462338 -2.502985655668371 -0.04285288971901147 LFNIHED ddPTM_BT-474_Trastuzumab_2h_R1 2 LFNIHED 7 0 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 Apoptosis-inducing factor 1, mitochondrial 0 ; 84.244 0.050456 314290000.0 549050.0 686990.0 655170.0 579350.0 667990.0 911970.0 498970.0 465360.0 762770.0 655280.0 False True 546093.97580519 709856.0468557762 747412.2411602733 652695.6505979067 753054.5670130746 848927.6604464645 474832.91484949505 500087.5262501987 574795.5540943467 613459.4693865664 0.8901875397754655 1.1571360167699463 1.2183563518999128 1.0639588810171514 1.2275539046876192 1.3838365903706016 0.7740249169587485 0.815192447433023 0.9369739693954321 1.0 19.22660850414961 2.22080380979227 24.999992714089636 0.8573976344426757 1.1586406271464702 0.5057302090859634 0.13246226132575228 185.81574423102353 261610.30606826037 0.04978969361195609 0.036850780175065365 166.266138231187 -2.22080380979227 0.3012429927037945 LFNVDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LFNVDR 6 0 P25788-2;P25788 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ;;;;; 160.77 0.020256 1987400000.0 2807680.0 3038000.0 1997000.0 2263880.0 2061230.0 2682710.0 1567100.0 1921960.0 3051150.0 2586560.0 False True 2792563.762842575 3139117.9934902163 2278160.2417648314 2550486.975879152 2323715.4226326183 2497260.5721200663 1491293.3860966465 2065386.4147151278 2299234.965815338 2421483.5263345717 1.1532449973218326 1.2963614905288812 0.94081178624135 1.0532745517950537 0.9596247083084863 1.0312936449748222 0.6158593977114661 0.8529425834424436 0.9495150145810478 1.0 21.207459757456252 3.7938625584544594 0.7491961984572685 0.8539330540834797 1.257276808554659 0.4410680505587069 0.12727969156454172 0.8551907856910218 0.8044964275662495 0.0585497690231775 0.23750499595923208 6221.033764260999 -3.7938625584544594 0.4033437544711793 LFPADT(ph)SPSTATK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFPADTSPSTATK 13 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 LFPADT(0.586)S(0.414)PSTATK 202.61 1.0343e-06 117770000.0 453420.0 416940.0 384010.0 398230.0 382810.0 472280.0 519750.0 444580.0 666460.0 500270.0 True False 450978.8370996978 430817.5958544472 438075.27012524504 448645.8771685583 431558.5844073639 439632.3952275367 494607.7068621868 477756.8171314964 502219.8631064653 468342.3402973043 0.9629256172171319 0.9198775314249052 0.9353740467862767 0.957944303911872 0.9214596829605667 0.9386988051271586 1.0560815546768827 1.0201016991720537 1.0723349564928413 1.0 18.837203944623532 2.2453188376628153 24.98546086925921 1.0374178360228823 0.9383406902465402 0.8241669857942057 0.02211558621867794 55.42709795373143 204916.94490161183 0.007204468015229457 0.005899551247360422 175.92146689297718 -2.2453188376628153 -0.09907714577634208 LFPADTS(ph)PSTATK ddPTM_BT-474_Trastuzumab_2h_R1 5 LFPADTSPSTATK 13 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 LFPADT(0.019)S(0.979)PS(0.002)TATK;LFPADT(0.045)S(0.955)PSTATK;LFPADT(0.017)S(0.981)PS(0.001)TATK;LFPADT(0.049)S(0.95)PS(0.001)TATK;LFPADT(0.006)S(0.994)PSTATK 256.04 7.7979e-24 1738840000.0 4761110.0 4624320.0 3984940.0 3939130.0 3901060.0 5016600.0 4856460.0 4622630.0 6184970.0 4898650.0 True False 4735476.712769053 4778237.695739526 4545984.914280594 4437823.454111896 4397836.867605841 4669814.249806179 4621534.476321183 4967594.123839515 4660767.017851918 4586013.963054736 1.032590993162777 1.0419152087702652 0.9912714943529133 0.9676864243901843 0.9589671778226443 1.0182730116887004 1.0077454001563455 1.0832051894867345 1.0163002239852295 1.0 22.12880931682883 1.9688484172496081 22.60528213956666 1.0431789772929485 1.0007488003640899 0.14229416027842035 0.03183289111123774 290.9610890655183 211135.73875228481 0.013822040653356571 0.00893895220792768 93.07829455637255 -1.9688484172496081 -0.04243017692885864 LFPDT(ph)PLALDANK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFPDTPLALDANK 13 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 LFPDT(1)PLALDANK;LFPDT(1)PLALDANK 242.07 7.2184e-16 540200000.0 1150370.0 1079720.0 1002520.0 902870.0 957500.0 1346480.0 1194860.0 1143750.0 1837230.0 1293490.0 True False 1144176.535738123 1115657.8274954774 1143666.101939949 1017173.2494266542 1079431.949452866 1253401.0068729867 1137060.0569915385 1229102.4328448197 1384469.2841207124 1210938.3607874967 0.9448676933432375 0.9213167768258193 0.9444461741192184 0.8399876346845323 0.8914012342881685 1.0350659021635715 0.9389908634590504 1.014999997229843 1.1433028541769585 1.0 20.20769400012897 2.0029993882505845 1.0991405813471333 1.0622315914465674 0.9132174073132658 0.5130456446183651 0.05618393877666564 0.4118224176254651 0.9177283175840653 0.04373602922315342 0.020428743140422537 100.69302504837344 -2.0029993882505845 -0.14901418413330159 LFPDT(ph)PLALDANKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFPDTPLALDANKK 14 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 LFPDT(1)PLALDANKK;LFPDT(1)PLALDANKK 136.34 1.6196e-05 846440000.0 939140.0 775410.0 667150.0 638460.0 672010.0 938400.0 900790.0 855210.0 1450330.0 980410.0 True False 934083.7745882621 801219.0531047559 761078.9210282468 719288.9705372215 757586.4901846693 873530.616755993 857215.3463480306 919030.112868387 1092915.6049263247 917839.3944287688 1.0176984996047191 0.8729403618629888 0.8292070765843688 0.7836762890144652 0.8254020199864756 0.9517249118508887 0.9339491762407208 1.0012973058760017 1.190748197952995 1.0 19.807882204184732 1.7919341658088488 1.501117842182906 1.0902663370635224 0.8679148513952208 0.5431357241233508 0.07729747111216523 0.2876517360303326 1.2368772845842189 0.0595179329671834 0.024207906459508113 61.93471818474815 -1.7919341658088488 -0.22235148566830154 LFPEFDDS(ph)DYDEVPEEGPGAPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFPEFDDSDYDEVPEEGPGAPAR 23 0 Q96P48-3;Q96P48 Q96P48-3 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 1 LFPEFDDS(0.973)DY(0.027)DEVPEEGPGAPAR;LFPEFDDS(0.961)DY(0.039)DEVPEEGPGAPAR 93.949 0.0028373 108815000.0 47043.0 49899.0 45418.0 44451.0 44614.0 50378.0 43806.0 44406.0 52016.0 47873.0 True False 46789.72571496867 51559.858050417526 51812.459619667075 50078.49204233629 50295.32845210459 46895.487437056094 41686.93642482914 47719.80120909903 39197.35377869018 44817.70415386267 1.0440009500338503 1.1504350573917956 1.1560712579517876 1.1173819138618284 1.1222201003299235 1.046360770200549 0.9301443974397848 1.064753362762029 0.8745953082318231 1.0 15.451781126330117 2.540635701215276 3.336016064227601 0.98090758041998 1.121683768616443 0.6237849130373386 0.054513472956030484 0.1673964704954668 3.6738481091874102 0.01847029712889386 0.016623991742215297 347.2447602843835 -2.540635701215276 0.14077618819646287 LFPLIQAMHPTLAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFPLIQAMHPTLAGK 15 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;Q9H361;H0YB75;H0YAS6 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ; 177.84 7.3631e-07 429810000.0 797870.0 851070.0 828620.0 778310.0 770210.0 943500.0 884100.0 841760.0 1118940.0 985440.0 False True 793574.3565716915 879397.3504673209 945282.4935058462 876843.9661980775 868291.6781076663 878278.0657601014 841332.7054100223 904576.405570671 843192.2300278299 922548.3755223709 0.8601980965197071 0.9532262738735876 1.0246427380792933 0.9504585227864996 0.9411882359188123 0.9520130207402918 0.9119659496811078 0.9805192113188387 0.913981588824968 1.0 19.815265037963645 LFPLIQTMHSNLAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFPLIQTMHSNLAGK 15 0 B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0Y6X6 B1ANR0 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 167.55 1.3045e-06 230810000.0 234460.0 350340.0 300900.0 313740.0 322760.0 345880.0 317740.0 292390.0 370840.0 338740.0 False True 233197.69341095496 362000.855114998 343264.1045303148 353459.4518315134 363861.57285159983 321970.12971394183 302369.7023153268 314209.6265263362 279451.4510014124 317121.32319009566 0.7353579729836287 1.1415216468997882 1.0824377909288303 1.1145874653772025 1.147389173302251 1.0152900677730194 0.9534827216083286 0.9908183510510453 0.8812130581137164 1.0 18.27467536173772 2.416368867820256 4.738311171657057 0.960307219138138 1.0579798704086112 0.10895048121992124 0.1148060546121556 0.4169808115232807 18.997163936732914 0.03970447691105339 0.0332156871222357 260.8368025627526 -2.416368867820256 0.0976726512704732 LFPNATS(ph)PELLEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFPNATSPELLEDFR 15 0 Q7Z591-6;Q7Z591-3;Q7Z591 Q7Z591-6 AKNA AT-hook-containing transcription factor 1 LFPNAT(0.41)S(0.59)PELLEDFR 65.472 0.064453 17518000.0 23590.0 24796.0 29272.0 27438.0 26516.0 30987.0 26836.0 23128.0 34774.0 29250.0 True False 23462.994061095378 25621.319870501477 33393.24316321492 30911.64798671849 29892.65542735474 28844.94162555198 25537.840156524577 24853.928801604357 26204.41364772712 27383.239957815113 0.856837762705983 0.9356569898219518 1.2194774327164513 1.1288528324018274 1.091640560919945 1.0533794273427348 0.9326084201820733 0.907632874703386 0.9569508096228198 1.0 14.741005534492015 2.241044069872158 22.787515455841184 0.9376401513625676 1.0560529051684702 0.19359657974276168 0.09625502176986907 32.23270175203994 295766.91314413125 0.037148482397582276 0.029691942144253865 174.19836315688926 -2.241044069872158 0.11841275380590255 LFPPWIKPADTEPPPLLVYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFPPWIKPADTEPPPLLVYK 20 1 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 83.213 0.002703 68166000.0 129650.0 107890.0 109780.0 93465.0 98162.0 128280.0 120300.0 121670.0 156890.0 116830.0 False True 128951.97880546929 111481.05342911783 125236.0697751345 105297.65941681754 110662.3488482426 119412.305538639 114480.62940937206 130749.6332277414 118226.56171829246 109373.80937680468 1.1790023547704704 1.0192664410640893 1.1450279595152675 0.9627319375341096 1.0117810605553543 1.0917815354428282 1.0466914342808875 1.1954382312615142 1.0809403310712995 1.0 16.738907786554087 LFQECCPHSTDR ddPTM_BT-474_Trastuzumab_2h_R1 12 LFQECCPHSTDR 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;;;;;;; 234.04 5.1893e-16 59407473000.0 5833595.0 8938006.0 8452620.0 9731144.0 8614378.0 8556118.0 8852389.0 7659505.0 9988302.0 8645372.0 False True 5802187.5726933405 9235502.12657127 9642675.424509883 10963105.83264332 9711367.976881325 7964653.701595334 8424165.124660017 8231096.1572783 7526818.808489674 8093616.957284649 0.7168843797915454 1.1410846566267099 1.191392609188282 1.354537271840619 1.1998798594169473 0.9840660539818058 1.0408405993414178 1.0169861263164812 0.9299697339537635 1.0 22.94835314221311 2.7266595532251157 24.19902522398876 1.0010729775752043 1.1387972699239552 0.13781195732614926 0.15434946656134832 976.9807631307389 1986540.6946606203 0.051625716665438665 0.04907410915533814 532.916974000337 -2.7266595532251157 0.13772429234875094 LFQEDDEIPLYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFQEDDEIPLYLK 13 0 D6RIE3;D6RGV5;H0UI06;P14406 D6RIE3 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial 0 ; 125.74 0.0004575 42890000.0 87074.0 95506.0 100671.0 83035.0 104115.0 206369.0 100877.0 71028.0 120535.0 119854.0 False True 86605.20325883084 98684.85947540375 114844.6017519818 93547.22248622966 117373.42811204698 192103.19677037242 95997.19412243739 76328.47003287589 90830.76433625088 112204.8151078281 0.7718492577667349 0.8795064577270436 1.0235265005482777 0.8337184317476161 1.0460640926973757 1.7120762294003382 0.8555532490311107 0.6802602005941076 0.8095086137699449 1.0 16.775775062889117 2.018128815263172 24.990660705916433 0.7877735460775724 1.047944415695455 0.1323690336379464 0.2548009204595578 420.23708513513657 579296.4985017991 0.1003127770290122 0.07407316988845408 104.26266350447477 -2.018128815263172 0.2601708696178825 LFQEDPEAFLLYHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFQEDPEAFLLYHR 14 0 O43159;E9PPY3 O43159 RRP8 Ribosomal RNA-processing protein 8 0 ; 166.64 3.7734e-06 144726000.0 144997.0 199278.0 180591.0 180560.0 174922.0 171458.0 168716.0 160933.0 205611.0 179703.0 False True 144216.35226268106 205910.847763905 206016.6430748887 203418.87748676626 197197.27985607728 159605.51202871822 160554.5625222907 172942.63766121573 154940.92409624485 168234.20068852147 0.8572356374176946 1.2239535535651296 1.2245824108994332 1.2091410465544266 1.1721592818167796 0.948710258529543 0.9543515044218073 1.027987394676138 0.9209835066955943 1.0 17.360111498389262 2.739669929225604 24.982938530992875 0.9754218707799845 1.1510496046684529 0.3879193093101019 0.10409475034861454 100.73381601126283 2268661.7332881 0.032342958705437214 0.032559329227631766 549.1233726501478 -2.739669929225604 0.1756277338884683 LFQLGPPS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFQLGPPSPVK 11 0 Q9NZH5-2;Q9NZH5;O95997 Q9NZH5-2 PTTG2;PTTG1 Securin-2;Securin 1 LFQLGPPS(1)PVK;LFQLGPPS(1)PVK 163.27 2.5331e-05 981970000.0 2828000.0 2109200.0 1821120.0 1638350.0 1630050.0 3063900.0 3091200.0 2316100.0 3798900.0 3046900.0 True False 2812774.3622203385 2179403.4469616762 2077517.8665411975 1845764.9420161895 1837627.2054367028 2852099.8046448054 2941666.8464692505 2488939.1429174943 2862711.997651998 2852444.23341767 0.9860926742291468 0.7640476968590595 0.7283290036671495 0.6470818676811351 0.6442289682329533 0.9998792513561425 1.0312793540383007 0.8725636469097101 1.003599637151197 1.0 21.443767250769515 2.72675488618884 24.90619258507803 0.9694607779552255 0.7471555106176083 0.5759456547475609 0.09724883219866766 561.2456938750626 1184041.101244545 0.032981490805828524 0.03133043384947454 533.0339686507116 -2.72675488618884 -0.22230526733761713 LFQLMVEHTPDEESIDWTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFQLMVEHTPDEESIDWTK 19 0 Q12907;D6RBV2;D6RDX1 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 0 184.03 2.5787e-14 248210000.0 228040.0 313810.0 374990.0 269050.0 283930.0 412270.0 432120.0 314380.0 463760.0 485120.0 False True 226812.2579776257 324254.97614784946 427785.3325284898 303111.70241368166 320086.8025150412 383770.74527919135 411216.7047412952 337840.6319892933 349472.56206562143 454159.2262678724 0.4994113184521043 0.7139676073796137 0.9419280899430045 0.6674128474820419 0.704789827007164 0.8450136495803248 0.905446109992162 0.743881468104378 0.7694934768527534 1.0 18.792838663304977 6.5936408247339555 0.07066837082710355 1.1885517668571857 1.9455265025050314e-23 0.40456335175965663 0.10841944130777569 222.96300297723573 1.5346635831991045 5.573355396387739 27.774797596078766 3923203.3986908034 -6.5936408247339555 -1.1885517668571857 LFQQILSGVDYCHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFQQILSGVDYCHR 14 0 Q13131-2;Q13131;Q96E92 Q13131-2 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 0 ; 146.0 8.4255e-06 287540000.0 238050.0 312240.0 312010.0 304810.0 257920.0 277400.0 279840.0 236690.0 322140.0 286800.0 False True 236768.36524984147 322632.7196469345 355938.2959604633 343398.9147471265 290764.5831883895 258223.99092936132 266303.0701073872 254353.00968746693 242752.91345484563 268496.17845816654 0.8818314160353368 1.2016287214948305 1.3256736017787336 1.2789713310598583 1.0829375109102066 0.9617417738017985 0.9918318824373099 0.9473245062484075 0.9041205534054486 1.0 18.034542028723152 2.92519132600409 3.523405733018869 0.9600644999829172 1.1853695575105543 0.43389569487279644 0.11303482987643519 0.22638921771046916 5.421800268403074 0.036767410025421714 0.040406024482254464 841.7658952278852 -2.92519132600409 0.22530505752763708 LFRPPS(ph)PAPAAPGAR ddPTM_BT-474_Trastuzumab_2h_R1 7 LFRPPSPAPAAPGAR 15 1 Q86U90 Q86U90 YRDC YrdC domain-containing protein, mitochondrial 1 LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR 127.59 4.6786e-05 8075820000.0 4443534.0 5819130.0 5215661.0 5675430.0 5453710.0 5372689.0 5353355.0 5018457.0 5915500.0 5214796.0 True False 4419610.506667038 6012816.22431163 5949980.733461901 6393938.856085049 6148207.641828285 5001287.655379516 5094392.7668479495 5392959.744548296 4457704.288638915 4881983.254668522 0.9052899766587017 1.2316339304445014 1.2187630360616413 1.3097011035362895 1.2593668026101694 1.0244376915051698 1.0435088571793658 1.1046657604552699 0.9130929083740958 1.0 22.21903591596964 2.725937202333493 24.01993307899425 1.0324468347537794 1.1963534774407818 0.3561389529100518 0.11134786778384063 534.0374927650828 1016168.4809703417 0.03629157978147659 0.03445403287520748 532.0313235868479 -2.725937202333493 0.1639066426870024 LFS(ph)QGQDVSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFSQGQDVSNK 11 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;H0Y8L4;H0Y8U8 P55196-5 MLLT4 Afadin 1 LFS(0.99)QGQDVS(0.01)NK 66.215 0.064106 0.0 172390.0 135690.0 118150.0 125860.0 120430.0 175690.0 147050.0 114580.0 208880.0 148520.0 True False 171461.87139432968 140206.3596236629 134784.4930217901 141793.8630952834 135766.04665546573 163544.96382977476 139936.62971444835 123130.54142545091 157404.32284860063 139041.32644563066 1.2331720056006257 1.0083790424603565 0.9693844015109774 1.0197965361811263 0.9764438395843004 1.176232764822808 1.0064391162807829 0.8855679428058294 1.1320686221312082 1.0 17.085154224988624 4.7390595784561285 23.88961725507635 1.011422725098913 1.2331721300659506 0.40030194908128847 0.07796322943541541 21.988102731294045 1052177.6906109771 0.01890591537174932 0.11120841693577047 54835.21851623344 -4.7390595784561285 0.22174940496703766 LFSASEFEDPLVGEDTER ddPTM_BT-474_Trastuzumab_2h_R1 1 LFSASEFEDPLVGEDTER 18 0 E9PNM1;P37268;A0A1W2PQ47;P37268-4;P37268-3;P37268-2;P37268-5 E9PNM1 FDFT1 Squalene synthase 0 112.44 0.00064176 30530000.0 32220.0 30958.0 33202.0 32567.0 39515.0 34439.0 32585.0 28070.0 36304.0 35664.0 False True 32046.53109997851 31988.418315493826 37876.55300304255 36689.97886083024 44547.00102624538 32058.312990685907 31008.739063211837 30164.72593657187 27357.36564867672 33387.892986513456 0.9598249015870283 0.958084366941486 1.134439750910374 1.0989006965983332 1.3342261832526983 0.960177780719358 0.9287420166267263 0.903462999260135 0.819379817100987 1.0 15.027037431506276 2.49503922933639 24.535775188197 0.9104188829288845 1.0971128295044106 0.4097776808678747 0.10606278150246162 602.0003988173501 824342.9664680769 0.03633153372079195 0.033608158970080154 312.63617551418764 -2.49503922933639 0.18669394657552607 LFSLELVDESGEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LFSLELVDESGEIR 14 0 P27694 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 ;;; 199.7 4.7182000000000005e-08 101897800.0 162301.0 180525.0 171975.0 169666.0 177877.0 182843.0 191403.0 163035.0 183657.0 178860.0 False True 161427.1894493362 186533.66549533303 196187.5851665033 191145.6982037529 200528.58159042036 170203.49377612543 182144.1056595347 175201.49957495523 138397.1932277167 167445.0016702501 0.9640609623405494 1.1139996036589632 1.171653875657967 1.1415431711731632 1.197578784616825 1.0164740188023507 1.0877846686533623 1.046322660141149 0.8265232873314586 1.0 17.35332778584621 1.4379477352898757 4.184753267179104 0.9140038833314428 1.102668781500503 0.47579394247640583 0.07628478591607576 0.16895046338753003 5.396528927881539 0.05312432619469001 0.019413445643423167 27.412442599354442 -1.4379477352898757 0.18866489816906018 LFSLS(ph)NPSLSTTNLSGPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LFSLSNPSLSTTNLSGPSR 19 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 LFSLS(1)NPSLSTTNLSGPSR;LFSLS(1)NPSLSTTNLSGPSR;LFSLS(1)NPSLSTTNLSGPSR;LFSLS(1)NPSLSTTNLSGPSR 387.09 7.274699999999997e-127 1130980000.0 713100.0 622880.0 562225.0 606340.0 524319.0 603610.0 560496.0 552377.0 724140.0 664530.0 True False 709260.7488328585 643612.184261089 641381.3930526952 683102.5818305586 591087.9167678081 561883.861445104 533382.6671773513 593598.1766535713 545685.399978867 622119.1264672439 1.140072244459764 1.0345481385790134 1.0309623442938232 1.0980253664754118 0.9501201484100817 0.9031772815534688 0.8573642000145695 0.9541551632150723 0.8771397257589358 1.0 19.246831335673516 3.1288136306608347 4.522354730113331 0.9148614500739948 1.069479274444943 0.7140596581973904 0.04734748557596523 0.11170173825499558 3.9228572941133852 0.013351144975990749 0.016226724718717472 1345.2829272083477 -3.1288136306608347 0.1546178243709483 LFSSS(ph)SSPPPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFSSSSSPPPAK 12 0 E9PFH7;A0A087WYG2;A0A669KB35;Q9UPT6 E9PFH7 MAPK8IP3 C-Jun-amino-terminal kinase-interacting protein 3 1 LFS(0.004)S(0.036)S(0.32)S(0.32)S(0.32)PPPAK;LFS(0.007)S(0.055)S(0.498)S(0.255)S(0.185)PPPAK 95.094 0.0065461 960850000.0 2794800.0 2907800.0 2664200.0 2515200.0 2589900.0 3151000.0 3032000.0 2547400.0 3025800.0 2823600.0 True False 2779753.1073314687 3004584.36519778 3039296.202358471 2833624.0621107346 2919708.413460024 2933178.786656154 2885330.576635207 2737499.923435094 2280132.133642739 2643395.430594421 1.0515842900985817 1.1366382533702641 1.1497697874415347 1.0719637437950542 1.1045295681711413 1.109625428230603 1.0915243868702542 1.0355998545474945 0.8625770126000427 1.0 21.333960825966702 1.4884172158178735 3.443574362989013 0.9320818409433971 1.1038449200072347 0.7217124112253845 0.04178403887125883 0.10004812893082467 2.4058033615364174 0.02763714870418677 0.010222937211766673 30.790533637245755 -1.4884172158178735 0.1717630790638376 LFSSSS(ph)SPPPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFSSSSSPPPAK 12 0 E9PFH7;A0A087WYG2;A0A669KB35;Q9UPT6 E9PFH7 MAPK8IP3 C-Jun-amino-terminal kinase-interacting protein 3 1 LFSS(0.002)S(0.035)S(0.656)S(0.307)PPPAK 113.61 0.0012034 52073000.0 290150.0 314730.0 284060.0 257110.0 249910.0 322440.0 313580.0 253680.0 347710.0 286250.0 True False 288587.8646386952 325205.5977916975 324053.17890621873 289660.0996379176 281734.5571673792 300150.4817421167 298410.9374080705 272610.8897609388 262021.5295752919 267981.2799290451 1.076895612690208 1.2135384899937933 1.2092381191403372 1.0808967690377944 1.0513217835289674 1.1200427202287755 1.1135514297382354 1.0172758702888482 0.9777605720991734 1.0 18.031772697892915 2.1778872330128745 0.5371212820897528 0.9804115733373964 1.1623050626059246 0.5461320372452925 0.05153583596759421 0.6850835646542662 0.4104950523645661 0.05090838558218753 0.04055285551171794 150.62159180339086 -2.1778872330128745 0.18189348926852822 LFSSSSS(ph)PPPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LFSSSSSPPPAK 12 0 E9PFH7;A0A087WYG2;A0A669KB35;Q9UPT6 E9PFH7 MAPK8IP3 C-Jun-amino-terminal kinase-interacting protein 3 1 LFSSSS(0.073)S(0.927)PPPAK 176.51 2.6017e-05 283410000.0 861780.0 887710.0 835980.0 777110.0 737960.0 937080.0 941780.0 775300.0 950270.0 890500.0 True False 857140.2722327589 917256.8907179737 953678.71753158 875492.0463211176 831934.8317683933 872301.8652490483 896222.5034510259 833156.8228936283 716088.6914656251 833667.5276045928 1.0281560020642895 1.1002670253375002 1.1439556969093179 1.05016930290748 0.9979215985044083 1.0463426202475044 1.0750358791425816 0.9993874000197273 0.8589619575602143 1.0 19.669112616010228 1.5097806746341833 4.093097582899355 0.9278778803811355 1.0632935469830105 0.5390415670319275 0.04931035480862157 0.13524737355061214 4.875505122418167 0.03220564917962098 0.012971144255511206 32.34302784339151 -1.5097806746341833 0.13541566660187498 LFSTETSLQVHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFSTETSLQVHRR 13 1 A0A0C4DFM2;Q6ZN55;Q6ZN55-2 A0A0C4DFM2 ZNF574 Zinc finger protein 574 0 41.052 0.094474 39692000.0 9620.4 16150.0 16580.0 19288.0 22445.0 11826.0 19661.0 12536.0 13789.0 17273.0 False True 9568.604835326922 16687.54298711884 18914.31988405654 21729.858822356815 25303.237708062214 11008.49645540961 18709.922317686294 13471.499976518164 10390.88571313364 16170.622351840693 0.5917276791908836 1.0319666506353915 1.169671733871364 1.3437861790077188 1.5647658548640808 0.6807713528821925 1.1570316782245895 0.8330848178508548 0.642577971771807 1.0 13.981087583817807 1.6547452163290104 5.152436701400312 0.7954800223796702 1.0923596964680076 0.1415801714013738 0.2803819556978013 0.2697791344590058 15.79022221670303 0.15501032912593216 0.07451185567222138 45.159093582004786 -1.6547452163290104 0.2968796740883374 LFTEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFTEYR 6 0 Q9Y4C2-2;Q9Y4C2 Q9Y4C2-2 TCAF1 TRPM8 channel-associated factor 1 0 121.87 0.045283 92187000.0 170230.0 201720.0 171040.0 183600.0 157150.0 185720.0 173580.0 157080.0 206130.0 186870.0 False True 169313.5005943312 208434.12825768517 195120.94529366877 206843.74117506787 177162.12099897434 172881.613537855 165183.2722600065 168802.10723607813 155332.0235004884 174943.79661254378 0.9678165437858751 1.1914348053124397 1.1153350337183563 1.1823439594898835 1.0126802117559137 0.9882123109557523 0.9442076567358694 0.9648933572073554 0.8878967217369217 1.0 17.41653198294146 3.0239438457693417 3.6315723591144446 0.9566207357686978 1.1196187988210382 0.5719779211892626 0.06375117703520534 0.15369669147615808 4.361094250886535 0.018594078575010258 0.02173884434215984 1056.6808716550947 -3.0239438457693417 0.16299806305234044 LFVCDVLPLIINNHDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFVCDVLPLIINNHDVR 17 0 Q9NVR2 Q9NVR2 INTS10 Integrator complex subunit 10 0 ; 160.81 3.0443000000000003e-09 192290000.0 277512.0 333400.0 327540.0 293970.0 279512.0 310760.0 283670.0 257861.0 354210.0 288440.0 False True 276017.90622648154 344497.0174554439 373654.78497128375 331186.5718585765 315106.19640257925 289277.89265035425 269947.7983753659 277103.8972116263 266919.6916708295 270031.51225409214 1.022169242109626 1.2757659821987064 1.3837451112731058 1.2264737885367214 1.1669237926056315 1.0712745717549876 0.9996899847798227 1.026190961560365 0.9884760835604457 1.0 18.04276825178661 2.763243963504472 1.8605414485622587 1.0073155587879574 1.2407866747852097 0.5919044418364543 0.08429733008287969 0.24056186809174523 1.6500145987855808 0.03235044498082884 0.032330375919352526 579.7542800407773 -2.763243963504472 0.23347111599725223 LFVGEPVWTAYNRPADHFEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFVGEPVWTAYNRPADHFEAR 21 1 Q9BV57;Q9BV57-2;A0A0G2JQN5;H7C382 Q9BV57 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 0 ; 126.69 1.2647e-05 661600000.0 308900.0 396050.0 332030.0 368880.0 305570.0 363560.0 348300.0 307280.0 355330.0 352560.0 False True 307236.91672201635 409232.28483271936 378776.9379435035 415580.1701778814 344482.5282447125 338427.9529281848 331451.3983647901 330210.7939362239 267763.68267806026 330059.3189581981 0.9308536347096074 1.2398749598236567 1.1476026162178303 1.2591075188836418 1.0436988397480789 1.0253549392163854 1.004217664300423 1.0004589325897657 0.8112592715855795 1.0 18.33236580641132 2.5088403938067936 1.205941738755177 0.9430295554542262 1.146990419404885 0.4099954259266192 0.09957540639484527 0.44647539146713994 1.3155436187540615 0.05330185846270883 0.039613341178671886 322.73078460316117 -2.5088403938067936 0.20396086395065882 LFVGGIKEDTEEHHLR ddPTM_BT-474_Trastuzumab_2h_R1 8 LFVGGIKEDTEEHHLR 16 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;; 208.47 9.5359e-12 5625980000.0 2207206.0 3151200.0 3105920.0 3902730.0 3431580.0 3570640.0 4144680.0 2356348.0 5890250.0 3970280.0 False True 2195322.648139642 3256085.7870593737 3543206.5388594014 4396815.217844077 3868571.3724318193 3323810.061182459 3944185.9941848335 2532190.6530527 4438676.812806251 3716893.331272284 0.5906337504144054 0.8760234682185036 0.9532709774177377 1.18292746817651 1.0408077465886318 0.8942441348040318 1.0611512471988933 0.6812653545228152 1.1941899907272568 1.0 21.825665855142173 4.715602484458593 2.2467995796156135 0.9807307307126233 0.5037298158761357 0.4388465090014091 0.1395168658837229 0.5922564712540003 3.6146022367057316 0.03638480399796857 0.5496932902514267 51952.02550103067 -4.715602484458593 -0.47700091483648754 LFVGGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFVGGLK 7 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ; 126.05 0.0092828 1031740000.0 1867570.0 1874800.0 1645610.0 1539580.0 1545000.0 1896180.0 1932500.0 1708690.0 2384100.0 1934230.0 False True 1857515.2106265354 1937201.5846594665 1877297.584101463 1734490.6701433058 1741746.592067549 1765101.5397276005 1839017.5921330948 1836201.1243520132 1796570.5003032777 1810785.7854223822 1.025806158619283 1.0698126748369614 1.0367309039062103 0.9578662943495109 0.9618733513866583 0.9747710380418491 1.015590914694599 1.0140355303947246 0.9921496594276674 1.0 20.788184455983284 3.903721122852955 6.379947753346257 0.9902959559883181 1.049125719670296 0.6023505857540952 0.02093295149975094 0.17183662496577823 9.493665217112234 0.0060936767021935664 0.011167917485133388 8011.634403968201 -3.903721122852955 0.05882976368197801 LFVGNLPADITEDEFKR ddPTM_BT-474_Trastuzumab_2h_R1 4 LFVGNLPADITEDEFKR 17 1 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;; 276.38 1.5109e-35 8703790000.0 2039350.0 2126010.0 1815590.0 1772660.0 1759580.0 2125550.0 2110220.0 1966760.0 3070610.0 2200360.0 False True 2028370.366193085 2196772.9576498177 2071209.2906088175 1997078.5742450731 1983652.0831522413 1978615.7315065032 2008140.5967767676 2113529.61820492 2313899.309565976 2059931.1409770267 0.9846787234019034 1.0664302868919622 1.0054750129300154 0.9694880253608174 0.9629700933650597 0.9605251807436846 0.9748581187157087 1.026019548013858 1.1232896398995609 1.0 20.974164681377644 1.502608612861853 5.133106413621908 1.0659248202417289 0.9904672567788924 0.34325517640546666 0.04011587931029924 0.16455387361215898 9.612430908184255 0.02444439096467791 0.010450849377942478 31.81329208605674 -1.502608612861853 -0.0754575634628365 LFVGNLPPDITEEEMR ddPTM_BT-474_Trastuzumab_2h_R1 3 LFVGNLPPDITEEEMR 16 0 Q15233;C9JYS8;C9IZL7;C9J4X2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;; 166.38 1.5577e-08 125305000.0 245486.0 282198.0 255573.0 267792.0 273948.0 260903.0 262576.0 251946.0 313487.0 272513.0 False True 244164.33065205836 291590.78983770654 291555.4569196611 301694.439742668 308833.6539829904 242867.38970960016 249874.1957422715 270747.4898758651 236232.3293605863 255120.98702988276 0.9570530966292434 1.1429510101556326 1.142812515402783 1.182554376474445 1.2105380179750411 0.9519694656917923 0.9794341055642094 1.0612513420707015 0.9259619606791346 1.0 17.9608220587497 2.7289504611659523 24.887855735108765 0.9932294493348645 1.1320024985013244 0.5011078721936695 0.07117427970167634 570.0633667835084 1476315.7022641152 0.02338714381999046 0.022307994476668643 535.7355440775674 -2.7289504611659523 0.13877304916645994 LFVGNLPTDITEEDFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFVGNLPTDITEEDFKR 17 1 Q8WXF1;Q8WXF1-2;X6RDA4 Q8WXF1 PSPC1 Paraspeckle component 1 0 ; 202.03 1.757e-11 2212200000.0 1005870.0 1004970.0 952010.0 932000.0 914030.0 1090050.0 1102250.0 1023280.0 1478930.0 1096960.0 False True 1000454.5076826621 1038419.818932806 1086044.7329807396 1049991.1044398881 1030426.3026197427 1014697.4092016947 1048929.9564960953 1099642.3497105548 1114467.5181466916 1026951.0736452955 0.974198803971663 1.011167762108472 1.0575428185937656 1.0224353733939915 1.0033840258446893 0.9880679179777233 1.0214020739788343 1.070783582519888 1.0852196825606748 1.0 19.969936019246386 1.8556389307535806 5.270391899498341 1.0585208501221048 1.0115722401995757 0.28718301700925786 0.02925233067607482 0.2573820012167912 9.695827129431763 0.013438781166192064 0.007879431798071455 71.71977703690021 -1.8556389307535806 -0.04694860992252914 LFVLLPEQS(ph)PVSYSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LFVLLPEQSPVSYSK 15 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 LFVLLPEQS(1)PVSYSK;LFVLLPEQS(1)PVSYSK 230.23 3.7325999999999997e-13 842270000.0 937650.0 915290.0 863410.0 826770.0 802560.0 1007770.0 1040480.0 902870.0 1155080.0 1018960.0 True False 932601.7965827085 945754.8743455099 984970.6231057454 931438.9972293633 904761.2588541948 938105.2319354082 990148.0073804107 970246.7440809641 870426.0112790205 953929.1004244534 0.9776426740391343 0.9914309920147039 1.032540702099852 0.9764237162016726 0.9484575514591376 0.9834119029579826 1.0379681329983974 1.0171057195437796 0.9124640509359888 1.0 19.863522518165393 1.261711267946394 24.982400482247588 0.9562318978176013 0.997181868257219 0.18926022644608087 0.032482964667804634 322.33799639420636 347843.64492510026 0.02231715344676306 0.008137898062760546 18.268852439718973 -1.261711267946394 0.04094997043961768 LFVPALDKPETDLLSHLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFVPALDKPETDLLSHLDR 19 1 V9GYV5;V9GY92;Q9UNI6 V9GYV5 DUSP12 Dual specificity protein phosphatase 12 0 ; 249.14 3.3498e-25 548760000.0 753750.0 775210.0 751200.0 671060.0 741110.0 926870.0 835560.0 776730.0 1129390.0 919190.0 False True 749691.893749497 801012.3962256601 856962.4304525501 756016.1271946687 835485.9655968796 862797.6585172935 795140.7706508291 834693.5367550224 851066.9675506565 860526.5072418477 0.8712013952392973 0.9308398863773044 0.99585826031005 0.8785506557117517 0.9709009060915185 1.0026392577757137 0.9240165921203376 0.9699800409755825 0.9890072651898768 1.0 19.714860107466222 6.298396956896505 0.7578368897583145 0.9661942986071647 7.669508977848924e-55 0.37996452403637715 0.036915881633770076 26.640570424062314 1.7358700557342037 0.012574282626644359 36.53120797437463 1987911.091690628 -6.298396956896505 -0.9661942986071647 LFVWEILHSTIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFVWEILHSTIR 12 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 158.4 7.3551e-05 52483000.0 37488.0 48331.0 56565.0 51880.0 35899.0 40966.0 52241.0 35043.0 63051.0 42890.0 False True 37286.16877330835 49939.66811829351 64528.86032820615 58448.00268062374 40470.52485995659 38134.116843591226 49713.90324999997 37658.086604748416 47512.92589011453 40152.723480023575 0.928608710486566 1.2437429840379084 1.6070855158881059 1.455642298079787 1.0079148150458865 0.9497267816108008 1.2381203301124315 0.9378712909345671 1.1833051851078729 1.0 15.29321022576944 3.227049138529441 24.996842163221203 1.0501090878200923 1.3254333643959666 0.31430321711082443 0.1845210420698855 256.32525507817246 556601.9735250486 0.055222011793553044 0.06653967176218116 1686.74386231525 -3.227049138529441 0.2753242765758743 LFWEWGDGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LFWEWGDGIR 10 0 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 90.657 0.02485 153440000.0 189790.0 234790.0 247410.0 236510.0 220820.0 244810.0 248250.0 235720.0 197620.0 223320.0 False True 188768.19172765134 242604.8432164479 282243.17747372884 266452.1417500836 248940.11809731773 227886.86092075292 236241.19909290585 253310.62336190688 148919.19897233066 209067.52640612898 0.9029053673355053 1.1604138021185089 1.3500096467657574 1.2744788553746065 1.1907163315919915 1.090015579359111 1.1299755784836236 1.2116210858583196 0.7123019128424766 1.0 17.673609465914193 1.2504838265648914 24.998025159103914 0.8561509427313697 1.1721387177777238 0.47526182191710675 0.1290529989726057 156.9646204729978 329093.9953211371 0.0873697798172007 0.031358041811215896 17.802616094118584 -1.2504838265648914 0.3159877750463541 LFYADHPFIFLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LFYADHPFIFLVR 13 0 P50454;E9PKH2;H0YEP8 P50454 SERPINH1 Serpin H1 0 ; 191.79 3.2689e-06 1478510000.0 803230.0 1196740.0 1183280.0 1060720.0 827330.0 890790.0 1152280.0 910420.0 1455330.0 952510.0 False True 798905.4989272418 1236572.7674553925 1349875.5387458636 1195007.0432419288 932685.5715309026 829211.7839941087 1096539.814262935 978360.1634190858 1096683.4219228926 891719.9963151605 0.8959152000948116 1.386727641597431 1.5137885707665315 1.340114663997708 1.0459399535560754 0.929901524492718 1.229690731164657 1.0971607314649743 1.2298517768522619 1.0 19.766231243614413 3.241524049192927 24.906100814465745 1.0961351551774923 1.3078682025984565 0.2321563595584044 0.17160436579876387 104.27351446560962 876355.5665061857 0.048747234029268206 0.06324765233183398 1743.9099243502387 -3.241524049192927 0.21173304742096422 LFYHIVDSDEVSTK ddPTM_BT-474_Trastuzumab_2h_R1 3 LFYHIVDSDEVSTK 14 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ;; 203.21 1.5359000000000002e-08 1135000000.0 635930.0 610240.0 556620.0 563640.0 546630.0 726160.0 714840.0 622800.0 786480.0 699610.0 False True 632506.2235384659 630551.4695021302 634987.2577722291 634996.766208689 616240.0903701516 675962.2683967733 680260.4582460142 669276.4985143197 592662.5422920685 654960.290833745 0.9657169028267412 0.9627323645826785 0.9695049710019965 0.9695194885790052 0.9408816060981288 1.032066031875449 1.038628551633356 1.0218581307614092 0.9048831670964764 1.0 19.32104791550851 2.7422163621867846 24.92859033834273 1.005827544231493 0.9626012682945075 0.20811767013359195 0.03580790947284099 443.6886502190898 3025523.5458003194 0.011307281975001412 0.011564440937627379 552.3525485583721 -2.7422163621867846 -0.04322627593698547 LGADESEEEGRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGADESEEEGRR 12 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 0 ; 147.58 0.00010535 641520000.0 253820.0 293290.0 254410.0 270050.0 282700.0 275090.0 295130.0 244090.0 309570.0 298280.0 False True 252453.461322053 303051.98035245127 290228.7166286384 304238.3023111495 318700.1693058222 256073.67579220585 280853.43439391453 262305.23526390555 233280.6215254751 279243.5150296439 0.9040620380933576 1.0852605845485075 1.0393391466864623 1.0895089265684548 1.1412983727553696 0.9170264017233188 1.005765288279299 0.9393422627417499 0.835402109519752 1.0 18.091164251320123 2.7174407947829606 24.976199606454813 0.9416450923314885 1.055139776184203 0.3772481714825229 0.07211213808760733 859.6616322823438 1016630.193149134 0.023070074027235946 0.02177115111745599 521.7239753436672 -2.7174407947829606 0.11349468385271444 LGAGEGGEASVS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 5 LGAGEGGEASVSPEK 15 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK 337.49 4.087899999999998e-69 4982370000.0 4246590.0 3131770.0 2836340.0 2494030.0 2529500.0 3857400.0 3576460.0 3472560.0 5127320.0 3544070.0 True False 4223726.831280501 3236009.0712550557 3235672.018090768 2809773.9422813416 2851616.8314788733 3590747.017342893 3403452.966396033 3731700.0605023885 3863760.688568018 3317884.418369015 1.2730180737750876 0.9753230261245185 0.9752214393536165 0.8468570896338072 0.8594684057380917 1.0822399350210066 1.0257900930946475 1.1247227419503643 1.1645254027466518 1.0 21.661832198851755 2.534670726154941 24.9496449089567 1.086115600062899 0.9764386218239347 0.13380874039226953 0.1171021666222637 497.3347723385586 215610.483930018 0.03907526616322589 0.03684041822536643 342.5080050002853 -2.534670726154941 -0.10967697823896438 LGAGEGGEASVS(ph)PEKTSTTSK ddPTM_BT-474_Trastuzumab_2h_R1 5 LGAGEGGEASVSPEKTSTTSK 21 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 LGAGEGGEAS(0.001)VS(0.999)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEAS(0.016)VS(0.984)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK 276.65 4.958499999999999e-45 7329720000.0 2337220.0 1881730.0 1711200.0 1740880.0 1670180.0 2594580.0 2687640.0 2394420.0 4455280.0 2647480.0 True False 2324636.6672095517 1944362.2455201917 1952122.0859829667 1961275.2295035531 1882867.5230675584 2415222.791584361 2557628.5854181577 2573103.779018395 3357335.9416933837 2478515.559778334 0.9379148975031876 0.7844866003964428 0.7876174423361516 0.7913104365094079 0.7596754902906289 0.9744634372198036 1.031919519459018 1.0381632541570651 1.3545752934444546 1.0 21.241044885201035 2.229375833014027 1.3528762104697454 1.1423539103560598 0.8079658348033409 0.6561644048901184 0.10095511135677826 0.2565373772919292 0.9130789857743049 0.06005790619111676 0.03458707750320652 169.5804693817124 -2.229375833014027 -0.3343880755527189 LGAGGGS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LGAGGGSPEK 10 0 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK 166.24 5.8831e-06 2517730000.0 3015450.0 2099190.0 2040190.0 1686160.0 1859530.0 2503630.0 2490140.0 2449020.0 3434540.0 2542550.0 True False 2999215.1522479877 2169060.2701628497 2327431.0183506254 1899627.683114118 2096330.1232021817 2330559.951011091 2369682.4149414278 2631778.308271578 2588143.6374781365 2380282.28221343 1.2600249872292502 0.9112617803237335 0.9777962201131633 0.7980682364058308 0.880706519082602 0.9791107417914727 0.9955468024312876 1.1056580675062966 1.0873263464665275 1.0 21.182701244958395 1.974254128183738 3.237757446803408 1.0737298506783102 0.9545899398394749 0.113717711954747 0.11538957671727168 0.45537908817963885 9.249554771019296 0.05632276895298829 0.03272249293034248 94.24409061692927 -1.974254128183738 -0.11913991083883524 LGAGGGS(ph)PEKS(ph)PSAQELK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 2 LGAGGGS(1)PEKS(0.95)PS(0.05)AQELK 69.27 0.015429 439040000.0 309680.0 194040.0 203020.0 169970.0 175750.0 306250.0 273030.0 262080.0 432210.0 274170.0 True False 308012.71728868247 200498.50410034318 231603.45131852577 191488.18457258333 198130.720748137 285079.6583349562 259822.49582411328 281637.74041527434 325697.63681728137 256672.23587125345 1.2000235095282428 0.7811460535252945 0.9023315300634925 0.7460416742098808 0.7719211237460026 1.1106758678720199 1.0122734737637926 1.0972660890231367 1.2689242983828255 1.0 17.969567723068668 2.725180659960455 24.501434909943 1.0960552753239532 0.8685506081218788 0.38312723362974976 0.13760291935867952 613.52342172433 1123484.8224129032 0.04364862935557734 0.041378116660137604 531.1053300997505 -2.725180659960455 -0.2275046672020744 LGAGGGS(ph)PEKSPSAQELK ddPTM_BT-474_Trastuzumab_2h_R1 6 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 LGAGGGS(0.768)PEKS(0.232)PSAQELK;LGAGGGS(0.995)PEKS(0.005)PSAQELK;LGAGGGS(0.996)PEKS(0.004)PSAQELK;LGAGGGS(0.999)PEKS(0.001)PSAQELK;LGAGGGS(0.998)PEKS(0.001)PS(0.001)AQELK;LGAGGGS(0.999)PEKS(0.001)PSAQELK 288.75 2.4375e-40 13124210000.0 9216040.0 5936610.0 5604150.0 5037450.0 5163750.0 8154390.0 8468270.0 7819010.0 13264640.0 8037260.0 True False 9166421.864638312 6134206.475093474 6393165.607854978 5675190.653498618 5821322.954555851 7590696.2126693325 8058627.4281671075 8402504.230328273 9995747.20906961 7524315.185755518 1.218240017641939 0.8152511323165068 0.849667438168732 0.7542468003257589 0.7736681426605245 1.0088222017917965 1.0710114115664786 1.1167134846019313 1.3284593962773947 1.0 22.843128852449304 2.3022120336439578 2.0858897926821474 1.1496973366942407 0.8712312442668355 0.39143043090747487 0.14430976805138673 0.3099498295705094 2.756934860516545 0.06494011985264375 0.04582012793651389 200.54509006745883 -2.3022120336439578 -0.27846609242740517 LGAGPGDAGEVQAHPFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGAGPGDAGEVQAHPFFR 18 0 P23443-5;P23443;P23443-3;P23443-2;P23443-4 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 0 ; 199.08 1.6629999999999998e-15 1397250000.0 465310.0 563690.0 517650.0 564360.0 526820.0 575160.0 569020.0 427840.0 608240.0 616100.0 False True 462804.8226608016 582452.0808921992 590530.6205055405 635807.918134866 593907.404293221 535400.5429810073 541494.3287325086 459767.5933274999 458347.40199843404 576779.9705302534 0.8023940606594391 1.0098340973191757 1.0238403735876016 1.102340494851696 1.029694917712246 0.9282578632000612 0.9388230458743123 0.7971282236184797 0.7946659478779399 1.0 19.13766154033593 2.1729652188768367 2.0749744021156147 0.8469897673145779 0.9987849149762871 0.23651570796744714 0.09182624854471776 0.3729553360811685 3.1931952282354406 0.045904945862671805 0.02851097318743061 148.92418047774888 -2.1729652188768367 0.1517951476617092 LGAPENSGIST(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 3 LGAPENSGISTLER 14 0 A0A1B0GV68;M0QYB0;Q9Y4F1-3;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68;C9JME2 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 1 LGAPENSGIS(0.165)T(0.834)LER;LGAPENS(0.001)GIS(0.165)T(0.834)LER;LGAPENSGIS(0.13)T(0.87)LER 184.42 1.4478e-05 871550000.0 895420.0 1026670.0 1216600.0 978510.0 1238180.0 1963750.0 1191620.0 850520.0 1634840.0 1335990.0 True False 890599.158210515 1060842.0903148788 1387886.705123233 1102389.2656711105 1395854.883732166 1828000.584670269 1133976.7881695407 913990.1212530506 1231955.587733657 1250725.974401416 0.712065773349551 0.8481810660585237 1.1096648934531488 0.8813995137493663 1.1160357362852458 1.4615516284813148 0.9066548639579104 0.7307676820979723 0.9849924067686031 1.0 20.254334308726673 4.453887465659162 4.631748293587989 1.0070667528305495 0.7370594858875549 0.23264509778623554 0.1824457825330972 0.29753279364203916 15.704205260661405 0.05017603308918822 0.1669288115938317 28437.241464672836 -4.453887465659162 -0.2700072669429946 LGAPQTHLGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGAPQTHLGLK 11 0 Q96C19;H0Y4Y4;Q9BUP0;A0A087X1Z2;Q9BUP0-2;Q8WYH2;C9JTV4 Q96C19;Q9BUP0 EFHD2;EFHD1;PP1187 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 0 121.02 0.00042029 645260000.0 689080.0 687910.0 623620.0 544320.0 502930.0 692670.0 681590.0 586020.0 838360.0 677620.0 False True 685370.069843985 710806.6684996244 711420.2753977888 613230.8561896124 566975.1544003441 644787.3532697933 648618.8877733486 629751.7881492645 631757.4114484527 634373.7114603309 1.0803885114757676 1.120485694250073 1.1214529583202564 0.9666712934524864 0.8937557533636837 1.016415626343485 1.0224554959571468 0.9927141947600151 0.9958757748553997 1.0 19.274973461223283 3.7399077541699675 24.99983534528193 0.9842040184725974 1.1087467249929366 0.7183004694816337 0.035426905819894106 66.72426997973649 1238236.9154048886 0.009973063041423043 0.016807767369946342 5494.241616430793 -3.7399077541699675 0.12454270652033916 LGASNS(ph)PGQPNSVK ddPTM_BT-474_Trastuzumab_2h_R1 9 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 1 LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGAS(0.15)NS(0.849)PGQPNSVK;LGAS(0.003)NS(0.997)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK 343.34 2.7015999999999997e-69 34197136300.0 23138475.0 20296451.0 19293668.0 17347051.0 17657800.0 22374805.0 23211181.0 21933731.0 27869165.0 21819723.0 True False 23013900.021526273 20972006.102071255 22010048.75083144 19543185.877966773 19906416.164019644 20828087.39497558 22088367.49970788 23570537.384449247 21001182.713428378 20427169.597335298 1.1266318572362768 1.0266721486860828 1.0774889123015177 0.9567251001096188 0.9745068238243058 1.0196266935431222 1.081322960308181 1.153881709951828 1.0281004724300111 1.0 24.283985981313762 2.2113987223701668 7.476526735110768 1.0870733180317165 1.026361497208012 0.030921498921125168 0.0598339703521571 0.32950598666852005 67.03458574007526 0.022722269474979972 0.01706881532513753 162.70418446525085 -2.2113987223701668 -0.06071182082370452 LGASNS(ph)PGQPNSVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 LGAS(0.034)NS(0.966)PGQPNSVKR 114.06 0.00038937 3285500000.0 1678800.0 1907900.0 1770400.0 1688700.0 1803100.0 2115100.0 2232400.0 2025200.0 2714800.0 2341600.0 True False 1669761.527332214 1971403.2981500935 2019656.9314073403 1902489.2468536887 2032714.0971889927 1968888.1154098492 2124410.283403842 2176330.707757226 2045773.9164562465 2192157.083255382 0.7616979367430168 0.8992983729170237 0.9213103143174957 0.86786173371685 0.9272666236902996 0.8981510177573702 0.9690958278633321 0.9927804555526407 0.9332241435081129 1.0 21.06391975043 7.672624205278516 0.24549053910939148 0.9922256477329706 1.358561736641021e-15 0.7083366104861832 0.03538713394204623 24.01524567059582 0.37466231074409106 0.04759182188651484 9.476865886488264 47056996.63045599 -7.672624205278516 -0.9922256477329693 LGCCSSPHSKPNCS(ph)TLSPPMPLPQLLPSVTDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGCCSSPHSKPNCSTLSPPMPLPQLLPSVTDAR 33 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 LGCCS(0.022)S(0.022)PHS(0.022)KPNCS(0.311)T(0.311)LS(0.311)PPMPLPQLLPSVTDAR 46.18600000000001 0.056538 163530000.0 73881.0 47941.0 51274.0 42228.0 40846.0 56429.0 58844.0 59424.0 65208.0 49405.0 True False 73483.23290495086 49536.68720405349 58492.933518402635 47574.06047026563 46047.495986790316 52528.19604957793 55997.490914090464 63858.52062895788 49138.36214243366 46251.930602251494 1.588760338176538 1.0710187998431808 1.2646592857154217 1.028585398507663 0.9955799766020745 1.1356973723172739 1.2107060221041792 1.3806671375107813 1.062406725570103 1.0 15.497225965981931 4.745071458651016 24.717516279569274 1.1511826766858333 1.5887605699060057 0.5611687024063466 0.12071818828825084 538.7747499255826 2045320.6370336625 0.03122341435464501 0.29577369938081316 55599.57330736965 -4.745071458651016 0.4375778932201724 LGCEVLGVSVDSQFTHLAWINTPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGCEVLGVSVDSQFTHLAWINTPR 24 0 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 ;;; 404.52 1.6427999999999988e-157 5231750000.0 1867655.4 2470018.9 2346323.8 2381892.2 2420462.5 2456454.1 2523095.4 2064945.0 2366001.9 2489891.9 False True 1857600.1508424198 2552231.9859285424 2676665.796427932 2683439.5082990895 2728694.0521697705 2286645.2099379655 2401043.6363415704 2219041.6814782484 1782932.4345461647 2330984.8672382953 0.7969164351732869 1.094915725022435 1.1482982296659836 1.1512041738299124 1.1706185186018274 0.9809781445072775 1.0300554371192805 0.9519760135154053 0.7648837448947268 1.0 21.15250820784023 1.7447346898679463 1.8842873847330521 0.8807556888239181 1.0715937798124267 0.25842895156078693 0.11625828649729769 0.40204761044987863 2.8632677460969007 0.08278419930804905 0.033971377112571116 55.55647595393246 -1.7447346898679463 0.19083809098850857 LGDAS(ph)DTEAADGER ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDASDTEAADGER 14 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 LGDAS(1)DTEAADGER;LGDAS(0.865)DT(0.135)EAADGER 385.62 7.1946e-114 1589410000.0 1250580.0 1185890.0 1051380.0 1026600.0 1089070.0 1350360.0 1080790.0 1059710.0 1469710.0 1162490.0 True False 1243847.0162324994 1225361.6317643565 1199405.165241216 1156567.4547403296 1227756.6090763786 1257012.7916055226 1028508.0586812556 1138790.9412983465 1107519.6636050218 1088298.8929422402 1.1429277602862677 1.1259421834488539 1.1020916891669323 1.0627296069497267 1.128142844799843 1.155025333350437 0.945060282015597 1.0463953870426166 1.0176612976337942 1.0 20.053643405458068 2.2467060293578167 24.999999372218337 1.0082763898221474 1.1167947572410792 0.7469867299255046 0.0333198425469378 95.88627791126498 294295.5562420634 0.011900414545149429 0.00979435868520168 176.48428075678999 -2.2467060293578167 0.10851836741893184 LGDAVIWGTGQLFQAQQDLLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDAVIWGTGQLFQAQQDLLHR 22 0 Q12769;G3V198;E9PR16 Q12769 NUP160 Nuclear pore complex protein Nup160 0 ; 239.1 1.4122e-30 252190000.0 413450.0 455930.0 450450.0 439600.0 441140.0 479770.0 515140.0 448370.0 524170.0 471780.0 False True 411224.0311386133 471105.35443449515 513869.44461841247 495253.31492679694 497316.5641583672 446604.62915710075 490220.71017409733 481829.6461767271 394995.3270181486 441670.5964888211 0.9310649937028842 1.066644141991053 1.163467635617031 1.121318283046112 1.1259897491748798 1.0111712953216812 1.1099238076322906 1.0909253412094015 0.8943210848951004 1.0 18.752611264904615 1.2504702859095904 24.99721134182394 0.9471605463348135 1.0828556593388001 0.37662693463835584 0.0668295704898431 188.42067807583467 395481.4517672264 0.04512908974300277 0.016195481663195482 17.80206104370892 -1.2504702859095904 0.13569511300398662 LGDDEDREPSLRPDDDRVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDDEDREPSLRPDDDRVPR 20 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 151.23 3.4326e-08 874610000.0 531090.0 563530.0 478420.0 497770.0 527660.0 589320.0 567390.0 571940.0 647310.0 633490.0 False True 528230.6704496464 582286.7553889211 545777.3774988141 560787.6309624922 594854.3733141506 548581.6955100612 539943.1780597134 614621.0670524721 487789.124009612 593060.1258419248 0.8906865382321149 0.9818342694381796 0.920273263564994 0.9455830977784627 1.0030254056781824 0.9250018195562874 0.9104358133894012 1.0363554052465402 0.8224952289907079 1.0 19.177818850467293 -0.07665877758395365 0.004782304388036645 1.9257529736068133 2.3492727623098148e-06 0.023479489476463944 0.05948691805218241 65287.77053497523 91.43126587455392 18740.228768712586 18076.785193336913 0.8381875821415579 0.07665877758395365 -1.925750624334051 LGDDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDDEVR 7 0 Q14444-2;Q14444;G3V153;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 ; 146.87 0.0050945 1200190000.0 2009710.0 2220900.0 2031700.0 1997970.0 1986390.0 2287500.0 2232500.0 2070100.0 2637300.0 2209600.0 False True 1998889.9446597716 2294821.313937601 2317745.7001470234 2250912.7971435213 2239344.9922440513 2129370.509195797 2124505.4460218013 2224581.373754809 1987372.7530094504 2068581.436266265 0.9663095247860849 1.1093695774818966 1.1204517547689556 1.0881431872493061 1.0825510434271373 1.02938684059703 1.0270349567945836 1.0754139695704317 0.9607418485764843 1.0 20.980210324279298 2.734589149606449 21.561014434376506 1.028156660745382 1.0788022163273565 0.2310015338325132 0.047956793393489336 82.47069279962717 447728.671531531 0.015151675372822405 0.014822927091940958 542.7366499191916 -2.734589149606449 0.05064555558197448 LGDDIDLIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDDIDLIVR 10 0 O15371-2;O15371;O15371-3 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ; 103.55 0.006514100000000001 75611000.0 179523.0 190807.0 167396.0 165619.0 167907.0 178954.0 195629.0 178345.0 212399.0 191955.0 False True 178556.46811488023 197157.89564973273 190963.90176788456 186586.34841870118 189288.9611872398 166583.33119240412 186165.67789464712 191654.0095175598 160056.1124507849 179704.26755905637 0.993612842589846 1.0971241714387254 1.0626564653236625 1.0382967024274097 1.0533359266219628 0.926985950056304 1.0359557979526965 1.0664967066214852 0.8906639481902426 1.0 17.455265144348562 LGDLWTLDIDTLTWNKPSLSGVAPLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDLWTLDIDTLTWNKPSLSGVAPLPR 27 1 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 ; 266.46 1.7359e-53 394300000.0 192661.0 225110.0 213980.0 195827.0 204211.0 243640.0 235370.0 241760.0 273630.0 242770.0 False True 191623.73458264917 232602.65026813158 244106.5240524979 220618.6781214051 230216.06039657362 226797.74026686934 223984.25389928403 259801.35883240495 206197.55295414856 227276.21075414616 0.8431315092186937 1.023435974650894 1.0740522434904451 0.9707073053943918 1.012935140165671 0.9978947621236329 0.9855156118454335 1.1431084580754585 0.9072553272071258 1.0 17.794087158050797 4.738917285745182 24.249794633897856 1.0216573123499608 0.8431314332148895 0.41436199668094953 0.05966446825317893 17.50662234616936 1189539.5356539981 0.013986358383762594 0.08178347871372171 54817.25518920983 -4.738917285745182 -0.17852587913507134 LGDLYEEEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGDLYEEEMR 10 0 P08670;B0YJC4 P08670 VIM Vimentin 0 125.56 0.00094396 83257000.0 32080.0 42141.0 35511.0 40171.0 36445.0 55812.0 48644.0 38930.0 55790.0 60333.0 False True 31907.28484442308 43543.637710227566 40510.640132854765 45256.64448117459 41086.054723561014 51953.847807316204 46290.903881874365 41835.154282534495 42041.302047699275 56482.496286319976 0.5649057131377354 0.7709226853129331 0.717224676605988 0.8012507848760877 0.7274121617303949 0.9198220904393596 0.8195619337930359 0.740674669732452 0.7443244334418989 1.0 15.785516230557807 -4.999999589795044 0.03214444252623402 2.137072072843456 4.633047244556171e-09 0.518192027533853 0.07786468765250251 1161.156909455074 2.8061818694795555 150.0158316855545 57.050889648286216 1.0000009445322634e-05 4.999999589795044 -2.1370720682104087 LGDSHDLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDSHDLQR 9 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 137.69 0.0001575 957830000.0 2159750.0 2183770.0 2331620.0 2171610.0 2064180.0 2366800.0 2415500.0 2199100.0 2861900.0 2359200.0 False True 2148122.145970784 2256455.4643331585 2659891.8291956526 2446535.603339811 2327041.0876465943 2203188.686847917 2298653.036893917 2363208.0088035357 2156623.0924952608 2208633.8361872598 0.9726022081048363 1.0216521305443969 1.2043154395331526 1.1077144446737437 1.0536110827966576 0.9975346074799148 1.0407578654423117 1.0699863282376927 0.9764511695692463 1.0 21.074722827082983 3.001998530341648 12.006974030371728 1.0270685947674316 1.0816444511643533 0.1647191017618701 0.061166599941548445 0.2746782879965511 1303.5922626333177 0.019068734746065 0.022213262824063756 1004.6123906508377 -3.001998530341648 0.05457585639692164 LGDVGMAELCPGLLHPSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDVGMAELCPGLLHPSSR 19 0 P13489;H0YCR7 P13489 RNH1 Ribonuclease inhibitor 0 ; 194.51 2.4743000000000005e-21 115380000.0 131281.0 205028.0 194769.0 225839.0 227923.0 251860.0 225668.0 187136.0 196977.0 219148.0 False True 130574.19768269014 211852.2330379568 222190.78223750368 254430.1942442057 256947.64304453853 234449.51101466795 214751.57670452347 201101.0385773537 148434.65770657227 205161.7870179579 0.6364450201989171 1.0326105856126768 1.083002763170781 1.2401441708144965 1.2524147248826987 1.1427542839356652 1.0467425724154282 0.9802070916829714 0.7235005108118878 1.0 17.646402517206646 -1.3786984272254343 8.495712441999874 0.9999998261121565 1.0329173135377088 0.0 0.19015610241129166 6.373637730612232e-07 4.661048731632405e-08 0.1878038995101782 0.04426557045332191 0.04181206075488942 1.3786984272254343 0.03291748742555223 LGDVS(ph)PTQIDVSQFGSFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGDVSPTQIDVSQFGSFK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 LGDVS(0.99)PT(0.01)QIDVSQFGSFK;LGDVS(0.83)PT(0.17)QIDVSQFGSFK 217.97 8.5259e-19 198773000.0 491100.0 411070.0 388237.0 364919.0 389643.0 420470.0 428340.0 484880.0 512090.0 427510.0 True False 488455.9721663393 424752.21645293717 442897.39498350135 411117.707984012 439261.7264550003 391403.89857991535 407619.55778229755 521064.2077707501 385892.28115444205 400225.9457902752 1.2204505412607558 1.061281061162172 1.1066183980375592 1.0272140332437225 1.0975343579678378 0.9779573330935852 1.0184735949025572 1.3019251081832564 0.9641860684280968 1.0 18.61045517153959 1.016933311480927 0.007858851195708692 1.524128403239702e-07 2.146117368223216 0.0760850274763164 0.09946571509497228 10473.710009086863 56.58494057744456 7798.040949206207 7647.451584957501 10.397604921183282 -1.016933311480927 2.146117215810376 LGDVYVNDAFGTAHR ddPTM_BT-474_Trastuzumab_2h_R1 14 LGDVYVNDAFGTAHR 15 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 ;;;;;;;;;;;;; 242.19 6.4805999999999985e-18 75349353000.0 16906161.0 19499804.0 17018267.0 17346191.0 17051750.0 22011099.0 20433096.0 16319824.0 21513581.0 21204460.0 False True 16815140.107627064 20148843.18825955 19414291.0681715 19542217.002054945 19223189.28885941 20489523.53468373 19444669.084473155 17537692.137267128 16211847.22976601 19851173.20874846 0.8470602684689986 1.0149950824760274 0.9779921248994783 0.9844363754502249 0.9683654002065581 1.0321568060095283 0.9795224131087549 0.8834587232122998 0.8166694763723793 1.0 24.242720937696966 1.732216889730482 6.149375807885502 0.8880586649329558 0.9766834153316001 0.20776659173758072 0.06259168473684222 0.17380329377191406 17.397562800248004 0.029566039382495676 0.015332626858342208 53.97801252192567 -1.732216889730482 0.08862475039864426 LGEASDS(ph)ELADADK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGEASDSELADADK 14 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 LGEAS(0.397)DS(0.603)ELADADK 188.59 8.558700000000002e-07 296360000.0 562240.0 413100.0 348620.0 292340.0 323880.0 618140.0 516700.0 494560.0 838100.0 480550.0 True False 559212.9623107361 426849.78377577657 397702.6657406393 329350.2140257046 365124.19821283943 575409.4367450441 491705.24701431865 531466.5785247948 631561.4849646307 449880.8875804461 1.2430244932570949 0.9488062186225877 0.884017696060768 0.732083142711439 0.8116019335174562 1.27902618810885 1.092967628962441 1.1813495376145755 1.4038415553976988 1.0 18.779183552225952 2.7367893695736756 24.980973465097044 1.1924655595357176 0.9124170819868402 0.4130148302711313 0.15917127856315602 156.95550470728372 2213623.4352609916 0.05141381433504934 0.05080727541333072 545.493235717452 -2.7367893695736756 -0.2800484775488774 LGEGT(ph)YAT(ph)VYK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGEGTYATVYK 11 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;Q00537;Q00537-2;F5H6Z0 E5RJM2;Q00537 CDK16;CDK17 Cyclin-dependent kinase 16;Cyclin-dependent kinase 17 2 LGEGT(1)YAT(0.999)VYK;LGEGT(0.998)Y(0.003)AT(0.975)VY(0.024)K 80.014 0.039765 17367700000.0 1617070.0 4478970.0 4440100.0 5346370.0 4530740.0 2734800.0 2808100.0 2277950.0 907070.0 2361850.0 True False 1608363.8747933682 4628049.808855461 5065227.485958953 6023219.89382433 5107702.883200079 2545749.713026738 2672261.4750162736 2447942.1961957216 683534.7526152824 2211114.7109184843 0.7273995631485185 2.0930844455975763 2.2908026711354506 2.7240648637909515 2.3100126185123924 1.1513422168718004 1.2085584984897648 1.1071077335371988 0.30913581698859305 1.0 21.07634244232107 2.6426279860398223 4.566389058009847 0.9731525182358949 2.084046189117512 0.5013173199529077 0.5358042319298544 0.2012629295131319 7.110072341817356 0.18418399018366988 0.17343960228557526 439.1652680270394 -2.6426279860398223 1.1108936708816173 LGEMWNNTAADDKQPYEK ddPTM_BT-474_Trastuzumab_2h_R1 5 LGEMWNNTAADDKQPYEK 18 1 P09429;Q5T7C4 P09429 HMGB1 High mobility group protein B1 0 ;;;; 287.65 4.2058e-40 12509890000.0 10637230.0 7371280.0 7141900.0 5730050.0 6178530.0 10117100.0 9166140.0 9323590.0 13834440.0 9216570.0 False True 10579960.335587347 7616628.598767151 8147417.441492363 6455473.742484737 6965329.172483564 9417728.690091709 8722738.790144801 10019363.630030723 10425127.633998448 8628360.611897444 1.2261843021487637 0.882743425009933 0.9442601912416687 0.7481692099868237 0.8072598591764043 1.091485290624713 1.0109381355847855 1.1612128978725411 1.2082396764483259 1.0 23.040655042777143 2.6580713825047075 7.979495922047783 1.102746391921212 0.9113552004220777 0.29972220825405893 0.13119167074357838 0.3795525380966429 34.17084381362446 0.04341114766915381 0.04090671610623667 455.0628500863069 -2.6580713825047075 -0.1913911914991342 LGEMWSEQSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGEMWSEQSAK 11 0 P26583 P26583 HMGB2 High mobility group protein B2 0 ; 180.07 1.5884000000000002e-05 271350000.0 281510.0 234760.0 231560.0 208463.0 193837.0 285390.0 274800.0 250020.0 350480.0 270700.0 False True 279994.38143870124 242573.84468458348 264161.6352443992 234854.3944258073 218520.9929880887 265661.66103579814 261506.8741620563 268677.76197583537 264108.90019139 253423.69424206988 1.1048468939579543 0.9571869173877536 1.0423714958241925 0.9267262681502653 0.8622753039791055 1.0482905390134458 1.0318959122751379 1.0601919555288104 1.0421634053645894 1.0 17.95119189223621 LGETYKDHENIVIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGETYKDHENIVIAK 15 1 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 ; 139.66 3.0497e-06 3195500000.0 6162300.0 6448500.0 6010100.0 5469000.0 5546600.0 7718800.0 7915400.0 6959300.0 12157500.0 7722000.0 False True 6129122.861495886 6663134.424299435 6856269.839274316 6161374.839250796 6252926.632726119 7185217.524100762 7532501.862235599 7478638.304609349 9161447.027153676 7229175.348863195 0.847831538967955 0.9217004848758066 0.948416590884392 0.8522929022906723 0.864957112115064 0.9939193860100038 1.0419586603913409 1.0345078025788077 1.2672879803080632 1.0 22.78539965385047 2.226717299654716 1.3588039487697885 1.1094826478039257 0.8902366493934191 0.6287902948462665 0.07241687159780354 0.28101760336549453 1.0087492442110486 0.04325441156640352 0.02487079745156063 168.54555351022958 -2.226717299654716 -0.21924599841050663 LGEVALLQGNHQIVEMCYQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGEVALLQGNHQIVEMCYQR 20 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 268.3 5.012699999999999e-37 604140000.0 215180.0 167040.0 214420.0 222630.0 168170.0 186770.0 196380.0 172550.0 222580.0 224820.0 False True 214021.4947887454 172599.82542218766 244608.47222794962 250814.93517323208 189585.45267831668 173859.0295092892 186880.34915554812 185426.55719114633 167728.14141919545 210471.79512191442 1.0168654411142113 0.8200615446939593 1.1621912194280557 1.1916795551059427 0.9007641739763779 0.826044313484296 0.8879116037723672 0.8810043031359105 0.796915051358972 1.0 17.683267388184156 3.027616006433315 24.76355169474136 0.8718406052750444 1.040443226849048 0.37156158467846845 0.1054974967811087 214.6921569275615 192515.0218364664 0.03150933989289705 0.0376601132810195 1065.6534773455244 -3.027616006433315 0.16860262157400363 LGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDR 34 0 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33;E9PRH9;E9PI86 P49321 NASP Nuclear autoantigenic sperm protein 0 230.44 3.519499999999999e-37 10123000.0 6418.1 7635.6 6662.7 6850.5 8368.9 9930.2 8555.6 8020.2 7978.0 6927.8 False True 6383.545662717949 7889.746330182333 7600.75024677343 7717.772597602409 9434.629808643433 9243.74864717643 8141.7329424341015 8618.708049750394 6011.928799722978 6485.661872812017 0.9842550826582341 1.2164905425082762 1.1719313149265274 1.1899745544792302 1.4546903606235673 1.4252591066960105 1.25534341784982 1.3288864295994425 0.9269568654087667 1.0 12.663038096131867 5.504598027691061 1.1188135158925931 1.2561846476236058 1.9088228758706673e-11 0.13515712618946096 0.1603566440775129 13.051767950605695 3.862645894951944 0.04525693971292947 29.210890284842076 319593.56607303105 -5.504598027691061 -1.2561846476045175 LGEVTGSPS(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGEVTGSPSPPPR 13 0 O94875-12;O94875-10;O94875-3;H7BXR3;O94875-5;O94875-4;H7BZX1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 LGEVTGS(0.001)PS(0.999)PPPR;LGEVTGS(0.001)PS(0.999)PPPR 144.8 4.9577999999999985e-06 0.0 375570.0 331070.0 269530.0 312540.0 318090.0 360750.0 352170.0 323070.0 425300.0 360410.0 True False 373547.9728497495 342089.4648139587 307477.48120324226 352107.53195455164 358596.8760328582 335812.201614157 335134.19167995465 347179.1239162188 320490.5137280252 337408.3252374751 1.107109531416685 1.0138738117181574 0.9112919219963915 1.0435650386122837 1.0627979489850174 0.9952694598682629 0.9932599957161108 1.0289583805374891 0.9498595314814986 1.0 18.36413604566348 LGEVVNTHGPVEPDKDNIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGEVVNTHGPVEPDKDNIR 19 1 P30419;P30419-2;K7EN82 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 0 ; 231.83 1.4842999999999995e-20 3090000000.0 2758900.0 2503890.0 2250900.0 2154420.0 1983180.0 2980600.0 2630870.0 2534050.0 4157700.0 2821370.0 False True 2744046.388942604 2587230.465016531 2567807.154826469 2427169.3511023433 2235726.2177712074 2774558.1375776986 2503604.767200619 2723153.6786451694 3133090.545325671 2641307.7511036154 1.0388968827263925 0.979526321359376 0.972172649610241 0.918927129974991 0.8464466955193146 1.0504486409879377 0.9478656041328543 1.0309868956040267 1.1861891307503165 1.0 21.33282097576075 1.5239129803020686 4.384256725686545 1.09824585703836 0.9634474733264647 0.3580503561368451 0.06876767876950148 0.16740529504228233 7.053412634500072 0.04146773168828402 0.01737808875813669 33.41280839875263 -1.5239129803020686 -0.13479838371189523 LGFEEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGFEEFK 7 0 A0A0C4DGQ5;K7ELJ7;P04632;K7EKD8;U3KQE2;K7EIV0;A0A075B7C0;U3KPR7;Q96L46 A0A0C4DGQ5 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 0 ; 121.52 0.010306 908870000.0 1061510.0 1049530.0 904720.0 845850.0 822870.0 1127470.0 1177670.0 948820.0 1409490.0 1079460.0 False True 1055794.9481048477 1084462.9715957183 1032096.7120327894 952934.523273046 927657.6169673931 1049530.652678901 1120701.6029637172 1019625.7664103354 1062140.0756983627 1010567.9386277975 1.0447540514084206 1.0731222811880015 1.0213036378674596 0.9429692817753459 0.9179567068266736 1.038555264383322 1.1089819497791162 1.008963106226027 1.0510328253047416 1.0 19.94673488404198 2.5065260084127177 24.984980952651515 1.0457106190275145 0.9997112525360029 0.14445671161499518 0.05025848039486704 1406.8600817673641 1195396.2660956006 0.01779796089638783 0.01675144132169197 321.01550436721527 -2.5065260084127177 -0.045999366491511595 LGFSLT(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGFSLTPSK 9 0 P38432 P38432 COIL Coilin 1 LGFS(0.002)LT(0.996)PS(0.002)K;LGFS(0.005)LT(0.994)PS(0.001)K 117.8 0.012214 1085200000.0 2461900.0 1598140.0 1366410.0 1546100.0 1082700.0 1990510.0 2134500.0 1648730.0 3055100.0 2317100.0 True False 2448645.403942803 1651333.1238039692 1558788.6509513683 1741836.1014747948 1220575.4273343273 1852910.7288565338 2031246.0804181602 1771766.6046813033 2302211.541242625 2169220.694230887 1.1288134077159853 0.7612563941491722 0.7185938503615688 0.8029778187656352 0.5626792288034533 0.8541826720464221 0.9363943861591977 0.8167756325547576 1.0613081220207015 1.0 21.048745408076798 1.243898257764419 24.771352928548676 1.0306541080372729 0.814827011924824 0.26283633998368405 0.13879756562707496 137.14181793564146 636485.1321413176 0.09889466357923975 0.03372949950231804 17.534696681097046 -1.243898257764419 -0.21582709611244888 LGFTQSQIDEIDHDYER ddPTM_BT-474_Trastuzumab_2h_R1 4 LGFTQSQIDEIDHDYER 17 0 Q13546-2;Q13546 Q13546-2 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 0 ;;; 269.59 2.2265e-28 902796000.0 278037.9 364003.5 333165.0 359030.0 325580.3 330331.2 317697.9 284090.5 283466.8 328007.0 False True 276540.97483931505 376119.1364527373 380071.7360779071 404483.16118782427 367041.02133937203 307496.18166000344 302329.6388531648 305290.775692329 213610.20540051552 307073.3124390787 0.9005698757822822 1.2248512691162534 1.2377231126306711 1.3172201712191158 1.1952879213891 1.0013770953182675 0.9845519835369769 0.9941950776099979 0.6956325956945358 1.0 18.228223608421587 2.487018479560284 1.8765691325759575 0.9176301821855329 1.1895619244308917 0.4630487396020565 0.13071904527366307 0.3141738144057299 2.2406442918184357 0.056112065001136524 0.045398003861433646 306.91525803877016 -2.487018479560284 0.27193174224535877 LGFVDVQNCIS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 LGFVDVQNCISR 12 0 Q14573 Q14573 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 1 LGFVDVQNCIS(1)R;LGFVDVQNCIS(1)R;LGFVDVQNCIS(1)R 168.5 4.8643e-05 1131080000.0 1044630.0 1532310.0 1601120.0 1302130.0 1678480.0 1936330.0 1375730.0 1122500.0 1556520.0 1518620.0 True False 1039005.8281493044 1583312.0120490459 1826543.778815477 1466979.5244896018 1892224.4788696042 1802476.0647305339 1309180.6841010423 1206266.6499395045 1172936.5022994254 1421700.3714440062 0.7308191296974882 1.113674895112317 1.2847600067518274 1.0318485905715886 1.330958700494459 1.267831183654948 0.9208555546562327 0.8484675633265201 0.8250237010967972 1.0 20.43918601305776 2.113139570963678 6.593321237547521 0.8771929987298438 1.137578248402284 0.3128461396296178 0.16496766356794432 0.24185326921268396 13.08719064927352 0.0631967627342626 0.04650237963212858 129.75962176957574 -2.113139570963678 0.26038524967244026 LGGAGMER ddPTM_BT-474_Trastuzumab_2h_R1 3 LGGAGMER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 91.041 0.029705 924140000.0 1143640.0 1233970.0 1291300.0 1428360.0 1199830.0 1308890.0 1417810.0 1853570.0 1547210.0 1621360.0 False True 1137482.7693103503 1275041.9454993815 1473103.8158191917 1609190.2295469479 1352621.2385504246 1218409.5150956425 1349225.11373983 1991892.8056377454 1165920.8270518158 1517883.4166838673 0.7493874409639566 0.840013094210474 0.9704986559754991 1.0601540354545538 0.8911232731598765 0.8027029623642058 0.8888858649549604 1.312283133041568 0.7681227782295776 1.0 20.533629555972762 5.6266287026105815 0.7451706331505872 0.9902003968697212 1.7959570026577009e-12 0.15625015232811323 0.14694679873217373 15.385374934949528 2.4478598115861594 0.056367853392614124 17.3204066265488 423280.92989026674 -5.6266287026105815 -0.9902003968679252 LGGAPAAQGVS(ph)PSPSAILER ddPTM_BT-474_Trastuzumab_2h_R1 4 LGGAPAAQGVSPSPSAILER 20 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LGGAPAAQGVS(0.969)PS(0.031)PSAILER;LGGAPAAQGVS(0.835)PS(0.155)PS(0.01)AILER;LGGAPAAQGVS(0.841)PS(0.157)PS(0.001)AILER;LGGAPAAQGVS(0.999)PS(0.001)PSAILER 291.49 1.8691e-54 754230000.0 473654.0 582440.0 521453.0 541410.0 542520.0 561130.0 560250.0 573410.0 648100.0 519643.0 True False 471103.8994919062 601826.1633075845 594869.0498492729 609952.4504879822 611606.7062320301 522340.40385794017 533148.5671371617 616200.7659169817 488384.43909506896 486478.93885124516 0.9683952620936787 1.2371063066547472 1.2228053515615218 1.2538106005746175 1.2572110679164392 1.073716377303768 1.0959335020671617 1.2666545593362322 1.0039169223817241 1.0 18.892017822151153 2.7310923883940106 24.759175814641402 1.1184000436835313 1.1962060016292084 0.15017854751587523 0.10626558208963767 1202.4471444712406 3986427.485064281 0.034432987844686784 0.033022499029221324 538.3843019789354 -2.7310923883940106 0.07780595794567713 LGGAPAAQGVSPS(ph)PSAILER ddPTM_BT-474_Trastuzumab_2h_R1 1 LGGAPAAQGVSPSPSAILER 20 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LGGAPAAQGVS(0.269)PS(0.676)PS(0.055)AILER 98.391 0.00084579 242130000.0 72426.0 94744.0 75776.0 75246.0 81070.0 77943.0 78939.0 83846.0 91784.0 65548.0 True False 72036.06646328502 97897.4967660425 86444.60214320074 84772.13588485385 91393.78396046344 72554.98386808657 75120.4189937358 90103.01428136101 69165.0630425889 61364.67052153381 1.1739012994130957 1.5953397277948191 1.4087031089471262 1.3814485625748778 1.4893550830423175 1.1823575886816813 1.2241639750575193 1.4683206723931237 1.127115365482453 1.0 15.905120671416139 2.7380291751584114 24.999669063499745 1.250717801821308 1.4184297088706332 0.29704771326411494 0.15114567285023045 73.19336809926237 3443033.3459322234 0.04665429800642564 0.04647739899843297 547.0527117224888 -2.7380291751584114 0.16771190704932515 LGGAVPFAPPEVS(ph)PEQAK ddPTM_BT-474_Trastuzumab_2h_R1 3 LGGAVPFAPPEVSPEQAK 18 0 A0A096LNZ0;A0A096LP25;Q6ZSR9 A0A096LNZ0;A0A096LP25 AAK1 Uncharacterized protein FLJ45252 1 LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK 168.64 2.1207e-11 128147000.0 390030.0 329586.0 307543.0 285303.0 294449.0 401397.0 370478.0 358403.0 507840.0 381715.0 True False 387930.121816407 340556.0707710561 350842.38118832343 321422.3305472247 331945.3348140437 373649.3701769028 352556.5637766028 385148.8517935579 382689.6367073598 357353.62189734646 1.0855637050961358 0.9529945966768021 0.9817792788150516 0.8994517219124663 0.9288987559482424 1.0456011840401536 0.9865761592249325 1.0777807420801682 1.0708990010385047 1.0 18.446992884976424 2.722549013973864 24.030442168683432 1.039827083907505 0.9655716543226897 0.28424542710543155 0.05234200315323889 597.6069927841423 896895.3163241135 0.01719519863592599 0.01626549610431219 527.8967812410712 -2.722549013973864 -0.07425542958481535 LGGLRPES(ph)PESLTSVSR ddPTM_BT-474_Trastuzumab_2h_R1 7 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LGGLRPES(0.998)PES(0.002)LTSVSR;LGGLRPES(0.711)PES(0.047)LT(0.096)S(0.027)VS(0.118)R;LGGLRPES(0.988)PES(0.007)LT(0.003)S(0.001)VS(0.001)R;LGGLRPES(1)PESLTSVSR;LGGLRPES(0.96)PES(0.031)LT(0.008)SVSR;LGGLRPES(0.999)PES(0.001)LTSVSR;LGGLRPES(1)PESLTSVSR 257.37 2.4079999999999998e-27 40098740000.0 2363739.1 3161490.3 2831617.9 3093351.0 3248223.4 2955857.0 3041546.0 2954951.0 3707139.0 2785717.7 True False 2351012.991321703 3266718.5934742563 3230285.0874559996 3484968.9194315793 3661865.3962615314 2751525.5629289406 2894414.8001459474 3175464.4485571384 2793564.266567593 2607930.8114130865 0.9014859524006411 1.2526093787373949 1.2386391055005388 1.3362965398392899 1.4041267430240525 1.0550607979657438 1.109851069468224 1.2176183642067322 1.0711803604382903 1.0 21.314474164600487 2.6850023381509494 24.99933244066994 1.1149974637194022 1.2348352729947694 0.1926734317788702 0.13405242763120415 621.1530251189904 289933.950608997 0.04433177513940499 0.0417964242904162 484.17497427420363 -2.6850023381509494 0.11983780927536714 LGGLRPESPESLT(ph)SVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LGGLRPES(0.343)PES(0.082)LT(0.568)S(0.004)VS(0.004)R 193.26 8.9225e-10 5548400000.0 399820.0 540010.0 479350.0 533980.0 570060.0 479130.0 502580.0 563670.0 584120.0 502880.0 True False 397667.41354417824 557983.9064070609 546838.3134151085 601581.8132497978 642653.7619896614 446008.87085070286 478268.2853579567 605733.9176582637 440171.452806992 470785.7678627708 0.8446886900372361 1.1852182977836057 1.161543850183904 1.2778249775493482 1.365066248512823 0.9473711851474445 1.015893678199225 1.286644497364731 0.934971876497544 1.0 18.844711181932635 2.71118615037073 24.900975881928566 1.0719497790642094 1.173756390002338 0.1277168682419596 0.15642617962681038 1904.8685032584242 1732747.1433830373 0.0525466310304373 0.04955152804936748 514.2640318330833 -2.71118615037073 0.1018066109381286 LGGLRPESPESLTS(ph)VSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LGGLRPES(0.001)PES(0.008)LT(0.078)S(0.835)VS(0.078)R 227.0 4.9825e-15 3491600000.0 303820.0 450740.0 375020.0 421620.0 438900.0 389610.0 399880.0 424080.0 489710.0 399260.0 True False 302184.2668775752 465742.6084219158 427819.55626772495 474997.0487703277 494791.3134358881 362677.1777432893 380536.2767100553 455727.00303460634 369027.5322778062 373778.88497631706 0.8084572966092556 1.246037770302155 1.144579251165651 1.2707969012225608 1.3237540517229551 0.9702987309362562 1.018078580693948 1.2192422347867018 0.98728833305067 1.0 18.511825546996704 2.7153356370089567 24.743170508825163 1.0644415216577285 1.1690161405113726 0.12934147680879016 0.14694091252975 1680.8107304400853 1790680.6892824243 0.047854992611352114 0.045143343915325006 519.2011395738267 -2.7153356370089567 0.10457461885364405 LGGPEGPGS(ph)PLLAT ddPTM_BT-474_Trastuzumab_2h_R1 4 LGGPEGPGSPLLAT 14 0 Q9C086 Q9C086 INO80B INO80 complex subunit B 1 LGGPEGPGS(1)PLLAT;LGGPEGPGS(1)PLLAT;LGGPEGPGS(1)PLLAT;LGGPEGPGS(1)PLLAT 180.24 1.8618e-06 398256000.0 849560.0 1001870.0 885330.0 943480.0 942470.0 968810.0 935540.0 915310.0 1135800.0 997110.0 True False 844986.0633549901 1035216.6373067964 1009976.7685736899 1062924.4712628156 1062487.968042656 901838.4450334326 890284.3560901398 983615.080050004 855897.308940256 933473.586131181 0.9052061846303214 1.1089940333473105 1.0819553799691102 1.1386765378848576 1.138208926131676 0.9661102986010975 0.9537327775710926 1.053714957406172 0.9168950484046978 1.0 19.832249674502968 2.7234538857393233 24.668511386486315 0.9853469845610985 1.0804860648438996 0.31717003357774576 0.07014273337984221 859.8571304696139 1404099.822017621 0.022677122609688318 0.02145886437540931 528.997824175514 -2.7234538857393233 0.09513908028280116 LGGS(ph)AVISLEGKPL ddPTM_BT-474_Trastuzumab_2h_R1 6 LGGSAVISLEGKPL 14 1 G3V1A4;P23528;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 1 LGGS(1)AVISLEGKPL;LGGS(0.999)AVIS(0.001)LEGKPL;LGGS(1)AVISLEGKPL;LGGS(1)AVISLEGKPL;LGGS(1)AVISLEGKPL;LGGS(0.994)AVIS(0.006)LEGKPL 168.5 9.157e-06 913548000.0 2236150.0 1846209.0 1826881.0 1608440.0 1477496.0 2133446.0 2193911.0 1909930.0 2901580.0 2034278.0 True False 2224110.816859619 1907658.9505080911 2084089.9652656885 1812068.339082932 1665646.3577951042 1985965.899611688 2087783.1433761006 2052458.6750280259 2186524.4881800185 1904448.6364069826 1.167850250377834 1.0016856921419341 1.0943272112592257 0.9514923660538626 0.8746081810521216 1.042803602914962 1.0962664487055975 1.0777180522443943 1.1481141819110505 1.0 20.860941947800278 -0.10374772389869408 8.135117215111034 1.0000000015165693 1.0463391615463298 0.029101568610542916 0.08449686264607936 0.0 0.0 0.08437676166736503 0.01988779344985166 0.7875031073245391 0.10374772389869408 0.04633916002976046 LGGSAVISLEGKPL ddPTM_BT-474_Trastuzumab_2h_R1 1 LGGSAVISLEGKPL 14 1 G3V1A4;P23528;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 148.18 6.3848e-05 351540000.0 1335400.0 1441600.0 1357300.0 1246400.0 1239000.0 1582200.0 1503700.0 1358900.0 1821500.0 1610100.0 False True 1328210.354776887 1489582.7845343973 1548396.0421369073 1404194.112203729 1396779.305871644 1472826.2380981813 1430960.2863081666 1460308.018354382 1372615.7318495102 1507342.0395240383 0.8811605594150917 0.9882181651383858 1.0272360231031785 0.9315696606240217 0.9266505340172787 0.977101546615952 0.9493268606506919 0.9687967163813013 0.9106199494594673 1.0 20.52357539351547 LGGSLADSYLDEGFLLDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGGSLADSYLDEGFLLDKK 19 1 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 236.16 5.6217e-24 1001750000.0 1624760.0 1261450.0 1276010.0 1096330.0 1051300.0 1723980.0 1753230.0 1574360.0 2624000.0 1836160.0 False True 1616012.4726878062 1303436.6006873706 1455661.116722254 1235125.2655907518 1185176.8234567065 1604805.3204124032 1668419.5669109998 1691846.7376380914 1977350.359798583 1718974.6967843354 0.940102536535797 0.7582639832486733 0.8468193973101182 0.7185244017269627 0.6894672886539878 0.9335828639098019 0.9705899511098631 0.9842185232877529 1.1503080083130879 1.0 20.71311687790255 2.435600899889711 2.688730706265223 1.0221065061492618 0.7885367209039588 0.6535680334858259 0.0806240570353309 0.17441290673864154 2.576946261274529 0.031003209984421708 0.025627484336530573 272.64711079693245 -2.435600899889711 -0.23356978524530303 LGGSPTSLGTWGSWIGPDHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGGSPTSLGTWGSWIGPDHDK 21 0 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ; 314.1 1.2519e-66 8515600000.0 2193200.0 2247500.0 2054780.0 1805130.0 1854100.0 2413300.0 2339900.0 2302200.0 2845800.0 2157400.0 False True 2181392.0548874275 2322306.6788575593 2344075.1635320717 2033659.27291585 2090208.6448883128 2246474.251297143 2226710.097713962 2474001.854334727 2144490.721766316 2019712.8849569352 1.080050571115676 1.149820202739894 1.1605982122464167 1.0069051339241282 1.0349038521546496 1.1122740603524162 1.1024884350140889 1.2249274997260209 1.061779987511463 1.0 20.945718788593638 2.4906341352829404 21.283867286113853 1.1247446802631076 1.0880667890266207 0.0 0.06972072070306759 305.8679209000235 481771.7586813209 0.02395546328989738 0.021652202369325607 309.4811024697972 -2.4906341352829404 -0.036677891236486904 LGGSPTSLGTWGSWIGPDHDKFSAMK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGGSPTSLGTWGSWIGPDHDKFSAMK 26 1 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ; 331.56 3.3014e-95 5968800000.0 2204900.0 2681000.0 2590000.0 2683000.0 2535600.0 2737600.0 3392600.0 2875200.0 4309500.0 2940200.0 False True 2193029.0633874172 2770235.464301275 2954649.487316429 3022667.524905809 2858493.63032134 2548356.1556172296 3228486.9770094384 3089762.0239697704 3247481.469341462 2752553.9187681335 0.7967251970740237 1.0064236872573433 1.0734211116339334 1.0981319945436567 1.0384877879524403 0.9258151632349169 1.1729059892328293 1.122507356859534 1.1798066687081743 1.0 21.392339393814094 4.790014737405658 1.8760167008340094 1.083010233881088 0.6803915877902631 0.5715084899416392 0.07272871641664365 0.7018983740652492 2.3039468075353438 0.01952255828076322 0.5159218152632307 61661.59258318046 -4.790014737405658 -0.402618646090825 LGHAEQK ddPTM_BT-474_Trastuzumab_2h_R1 5 LGHAEQK 7 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;;; 148.54 0.0020771 3691990000.0 7243830.0 7040250.0 6419830.0 5857250.0 6022250.0 5261400.0 7182380.0 6178270.0 9468670.0 7229230.0 False True 7204830.024145177 7274580.465329011 7323686.2618373195 6598777.249442621 6789147.8408276895 4897691.802003389 6834940.840043929 6639323.880019379 7135243.152177616 6767854.352144817 1.064566352829664 1.0748724908690752 1.0821282316036178 0.9750176209615662 1.0031462687544574 0.7236697994913631 1.0099125194498093 0.9810086823034682 1.054284383338771 1.0 22.69026709054513 3.64652369624691 2.995905301434193 0.956236998164458 1.075261921497497 0.25969717699442696 0.08466145041150763 0.3626784611775381 6.282341831978187 0.02412754278555628 0.04107968631416117 4431.223917505491 -3.64652369624691 0.11902492333303905 LGHAEQKDEMVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGHAEQKDEMVPR 13 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 187.57 4.1147000000000014e-06 564160000.0 282613.0 325891.0 326331.0 469290.0 392200.0 422950.0 474020.0 300676.0 622780.0 478670.0 False True 281091.4430092562 336738.0849297301 372275.56828010007 528702.0658826125 442144.3452484738 393712.46201720735 451089.841667751 323113.9699217912 469304.2138244512 448120.87078999553 0.6272670195291687 0.7514447705506153 0.8307481140608621 1.1798202233932105 0.9866631394985338 0.8785854167495676 1.0066253796046623 0.7210420022441072 1.047271493954547 1.0 18.773528394598372 4.225293293787887 2.6552730986030233 0.9493239380333247 0.6616817259246721 0.48567769896978963 0.11619655368762621 0.2582352939176802 3.59994665179676 0.03168075510448105 0.10181475360159492 16799.381543111347 -4.225293293787887 -0.2876422121086526 LGHDPYR ddPTM_BT-474_Trastuzumab_2h_R1 5 LGHDPYR 7 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-6 P18583-7 SON Protein SON 0 ;;;; 101.64 0.0089085 2003350000.0 1165730.0 1493580.0 1348520.0 1440120.0 1366500.0 1338800.0 1404360.0 1121410.0 1500510.0 1353800.0 False True 1159453.8392047784 1543292.9074118242 1538379.8944540364 1622439.0443411693 1540515.675119938 1246251.9071962116 1336425.7416238203 1205095.308604598 1130729.4163038773 1267399.3249535079 0.9148291437249352 1.2176848109560394 1.213808358711623 1.280132482633826 1.2154935266171527 0.9833143214289846 1.054463037269524 0.950841052916613 0.892165076973949 1.0 20.273439721555693 2.731029233960954 23.796774587477106 0.977841513285961 1.1798594802478877 0.48187726733058156 0.0993026233056666 257.20209415727203 812674.2656047912 0.03229285240067481 0.03102505560460224 538.3060166571497 -2.731029233960954 0.20201796696192664 LGHEEQQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGHEEQQKR 9 1 Q14257;Q14257-2;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 ; 103.56 0.0022084 209449000.0 168754.0 179548.0 174724.0 159417.0 159046.0 197039.0 205640.0 172580.0 284820.0 194541.0 False True 167845.4472143321 185524.14664094202 199323.62047176712 179599.17585460652 179299.56536050182 183418.15770991487 195692.4075789131 185458.79594348316 214629.92739246666 182125.22682507048 0.9215936207209011 1.0186625426643183 1.0944316937664849 0.9861301423504049 0.984485062756942 1.0070991312262647 1.0744936931053146 1.018303719789541 1.1784744548245183 1.0 17.47457124351013 2.246415474290669 23.055877926063353 1.064058698791851 1.0054961539333933 0.22481300609414445 0.05944618405332639 114.745500008659 336806.23273372266 0.02058496538204433 0.01689355944652117 176.36624736085892 -2.246415474290669 -0.05856254485845769 LGHGEEELETEKDFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGHGEEELETEKDFSR 16 1 O60306 O60306 AQR Intron-binding protein aquarius 0 ; 222.27 5.887e-15 504990000.0 318220.0 445920.0 397940.0 399950.0 384340.0 394700.0 395220.0 303860.0 424790.0 372670.0 False True 316506.73887756566 460762.17763566814 453966.4930435144 450583.62899220246 433283.4208383441 367415.31802386016 376101.69871298363 326535.57616981596 320106.19639437465 348885.88154116075 0.9071927401574286 1.3206673070297585 1.301189062274956 1.2914928715424205 1.241905860232485 1.053110307590688 1.0780077916928033 0.9359380629774554 0.9175097455372646 1.0 18.412395691221956 2.3581930421484545 1.5404194513105627 0.9539376420252366 1.2272488653768054 0.46794490029718416 0.11666925638406389 0.32330078899990233 1.5463507158627365 0.05962139806799763 0.040473676260703736 228.13559001738628 -2.3581930421484545 0.2733112233515689 LGHGLLSGEYSKPVPESGDGER ddPTM_BT-474_Trastuzumab_2h_R1 2 LGHGLLSGEYSKPVPESGDGER 22 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ; 137.09 2.1237e-06 428060000.0 499880.0 529130.0 479880.0 445460.0 485910.0 570580.0 555720.0 468850.0 653740.0 553880.0 False True 497188.7016218896 546741.7721841604 547442.9328082659 501855.1903259566 547787.7582857872 531137.1476008465 528837.7005434432 503837.9677720597 492634.5366671975 518530.9041994749 0.9588410210370506 1.0544053744072177 1.0557575804540067 0.967840462856765 1.05642258513305 1.024311460125667 1.0198769181556888 0.9716642994498108 0.9500581984168194 1.0 18.984070449987687 1.7322777315333977 4.7024125010300715 0.970241731887538 1.022169937862153 0.2708154320739701 0.034064669680408 0.20345693974953197 10.538488503571926 0.017049204265594847 0.008603424005272059 53.98557501647494 -1.7322777315333977 0.051928205974614894 LGHGLLSGEYSKPVPESGDGERVPEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGHGLLSGEYSKPVPESGDGERVPEQK 27 2 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ; 153.24 3.6459e-08 375050000.0 351060.0 314810.0 311280.0 307420.0 281890.0 393060.0 368130.0 351090.0 563070.0 398000.0 False True 349169.9319664328 325288.2605433362 355105.5183057374 346339.3404795174 317787.0206070683 365888.6873637158 350322.145506834 377290.11859889625 424308.9432514432 372599.29925505666 0.9371191321737143 0.8730243486600482 0.9530493455454833 0.9295222539923151 0.8528921585263973 0.9819897356093865 0.9402114985380764 1.012589447573353 1.1387808407041302 1.0 18.507265435452258 1.6394690567787757 2.468109080911838 1.0716878548265347 0.9205406319514501 0.6132319758009928 0.04724207070338747 0.15094936414840282 2.0755224876078335 0.030969416012408327 0.012317766658310752 43.5982499402287 -1.6394690567787757 -0.15114722287508464 LGHPEALSAGTGS(ph)PQPPSFTYAQQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGHPEALSAGTGSPQPPSFTYAQQR 25 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 LGHPEALSAGTGS(1)PQPPSFTYAQQR;LGHPEALSAGT(0.002)GS(0.998)PQPPSFTYAQQR;LGHPEALSAGT(0.001)GS(0.999)PQPPSFTYAQQR;LGHPEALSAGT(0.003)GS(0.997)PQPPSFTYAQQR 363.43 1.3197999999999992e-104 4449750000.0 600787.0 718237.0 664297.0 719499.0 740866.0 852047.0 754080.0 642585.0 805395.0 805071.0 True False 597552.4295457106 742143.0843615644 757824.2434269672 810587.4996281065 835210.8936431827 793146.996392897 717602.2695346558 690537.9556805134 606916.193990084 753690.6795240394 0.7928351056736814 0.9846786016117813 1.0054844301717227 1.0754909429688022 1.108161366902698 1.0523508090796274 0.9521177440960612 0.916208697335348 0.8052589881745063 1.0 19.52361302620998 -1.1103827581249792 5.578900714438979 1.0000002955783627 0.9728506824516578 0.006013966420813643 0.1002496328100991 3.867321314882871e-07 6.160502087157288e-08 0.1018290503157566 0.02400107607199108 0.07755632856957416 1.1103827581249792 -0.02714961312670483 LGIAVIHGEAQDAES(ph)DLVDGRHSPPMVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 O60256;O60256-2;O60256-3;O60256-4;E7EPA1;I3L0S1;C9K0K7 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 LGIAVIHGEAQDAES(0.883)DLVDGRHS(0.117)PPMVR 77.52199999999998 0.0094565 111770000.0 39774.0 48400.0 43179.0 51024.0 48194.0 48839.0 43371.0 44085.0 48012.0 50596.0 True False 39559.86120330681 50010.96474158218 49258.22788140396 57483.63316839144 54331.220231782165 45462.87488463974 41272.979036690514 47374.846559094105 36180.085927839005 47366.91996258505 0.8351790919602752 1.0558204920456227 1.0399288769527941 1.213581824906444 1.147028776088844 0.9598022189441638 0.8713460590068318 1.000167344562731 0.7638260194333412 1.0 15.531592243168726 2.538878884322433 6.5425636329081795 0.9169419159896164 1.0652875034386062 0.29131773477191447 0.11033230767852405 0.31151886134628654 26.8158621481344 0.03670327068544873 0.034266232416991387 345.8429159964264 -2.538878884322433 0.14834558744898985 LGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR ddPTM_BT-474_Trastuzumab_2h_R1 26 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 O60256;O60256-2;O60256-3;O60256-4;E7EPA1;I3L0S1;C9K0K7 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.263)DLVDGRHS(0.737)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.274)DLVDGRHS(0.726)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.011)DLVDGRHS(0.989)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.004)DLVDGRHS(0.996)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.022)DLVDGRHS(0.978)PPMVR 268.3 1.0834999999999999e-54 35989047000.0 2542210.0 2883520.0 2686511.0 2958391.0 2959380.0 2951969.0 2915195.0 2451819.0 3109351.0 3162733.0 True False 2528523.023826086 2979496.2200753507 3064748.397227781 3332922.9972693375 3336239.5013804883 2747906.331217578 2774175.880723644 2634786.183864613 2343093.1092187804 2960884.672188049 0.853975518728173 1.0062858064220204 1.0350786121510698 1.1256510692820594 1.1267711750877003 0.928069356104612 0.9369415522265411 0.8898645086090252 0.7913489948554024 1.0 21.49759686730243 2.556671216225589 6.915513018143752 0.9004974446181025 1.0339379647814184 0.3315932853003525 0.08570887950721308 0.2980460441763627 22.13653703415088 0.029073206500648426 0.027278748727552087 360.3057693189366 -2.556671216225589 0.13344052016331587 LGIDDLVHFDFMDPPAPETLMR ddPTM_BT-474_Trastuzumab_2h_R1 11 LGIDDLVHFDFMDPPAPETLMR 22 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;;;;;;;;;; 155.49 1.2704e-08 3009362000.0 1622308.7 1912085.3 1747890.8 1726290.6 1770989.2 1938468.0 1906510.3 1731266.3 2408053.4 1978070.7 False True 1613574.3702146395 1975727.9033305272 1993978.6317008163 1944838.812959436 1996514.1771446185 1804466.269822843 1814285.1132123892 1860462.1824981403 1814620.9058323957 1851828.5344144728 0.8713411313347288 1.0669065016622774 1.076762019077155 1.0502261828330517 1.0781312308571234 0.9744240550831531 0.9797262972762463 1.004662228669242 0.979907627574255 1.0 20.820519091247377 2.7122119845336456 24.69521317938455 0.9887447558716946 1.0346664487368213 0.11008776255788433 0.05688802044616059 1348.531344301482 1263907.332023655 0.018253930872577387 0.01721519458214243 515.4801954735476 -2.7122119845336456 0.045921692865126706 LGIHEDSQNR ddPTM_BT-474_Trastuzumab_2h_R1 11 LGIHEDSQNR 10 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;;;;;; 256.47 3.6133e-17 96182712000.0 19974807.9 24251357.0 22927219.0 22233050.0 21201173.0 22619251.0 23786363.0 20872297.0 26559667.0 23409400.0 False True 19867265.75367619 25058548.757490143 26155172.14823998 25047751.850393996 23901016.71235246 21055635.41835959 22635725.74895922 22429893.7895166 20014392.94915415 21915392.05020436 0.906543935338402 1.14342233531964 1.1934612937027558 1.142929672123316 1.0906041132004107 0.9607692789672566 1.0328688483922488 1.0234767298770475 0.913257353703947 1.0 24.38544115205546 2.830860772338877 5.548913742001061 0.9946211128611667 1.1076489132094811 0.32340276753150066 0.07780523737523623 0.27786997515189166 13.234994133962152 0.024266987031449264 0.025770527872326258 677.4243017175007 -2.830860772338877 0.11302780034831439 LGIHEDSQNRK ddPTM_BT-474_Trastuzumab_2h_R1 8 LGIHEDSQNRK 11 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;;; 171.92 9.064e-06 20762910000.0 17725440.0 19169640.0 17773440.0 17107970.0 16688100.0 21163770.0 21194000.0 19255130.0 26919120.0 21554200.0 False True 17630008.200521506 19807689.87910791 20275785.86249008 19273837.247880336 18813230.61688183 19700768.39405582 20168765.251057584 20692045.576168988 20285263.57372761 20178592.50252098 0.8736986089747801 0.9816190042310072 1.004816657056579 0.9551626182783756 0.9323361188116281 0.9763202459038973 0.9995129862768096 1.0254454354823739 1.005286348450384 1.0 24.26632221127968 2.303943216579876 2.745835556169282 1.0125597873507535 0.9546902535225591 0.4033985846929258 0.032857796223448775 0.28452096420130685 4.395163414272845 0.013449409253304562 0.01018528317471845 201.3460975333512 -2.303943216579876 -0.057869533828194375 LGIHEDSTNR ddPTM_BT-474_Trastuzumab_2h_R1 29 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;; 230.06 1.3287000000000002e-09 145148647500.0 27511158.499999996 34359211.7 30706571.9 32213034.2 30295826.4 32331805.399999995 32002215.1 28698903.1 36621424.7 31644743.900000002 False True 27363041.479413062 35502837.29085239 35029790.31721239 36291201.02684319 34153820.314608455 30096783.793581333 30454145.695279326 30840560.979399122 27596565.284634802 29625149.251873706 0.9236423164241925 1.1984019722232095 1.1824342223354993 1.2250132722807423 1.1528657636196828 1.0159200731006544 1.0279828613303337 1.0410263495110845 0.9315249368031251 1.0 24.820319086556463 2.7308118393439487 9.061629800904628 1.0106866250793012 1.1474292444265446 0.3914457373475462 0.08220691268358823 0.172422018778979 156.77677016838354 0.02596304410182705 0.025491757745653855 538.0366244577366 -2.7308118393439487 0.1367426193472434 LGIHEDSTNRR ddPTM_BT-474_Trastuzumab_2h_R1 10 LGIHEDSTNRR 11 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;;;; 186.87 2.4911e-06 33176280000.0 11862750.0 16377210.0 14737380.0 15420100.0 14610450.0 15217910.0 15736700.0 13817000.0 16900370.0 15699720.0 False True 11798882.27207542 16922315.534617484 16812275.004396684 17372283.078941546 16471004.20457817 14165931.700806916 14975455.700968111 14848094.701304348 12735500.266855637 14697750.428393481 0.8027679017655684 1.1513541216434409 1.1438672255529874 1.1819688437069482 1.1206479715942839 0.9638163180020267 1.0188944065915115 1.010229066933973 0.8664931636240658 1.0 23.809092023752438 2.7349509470561513 24.66655317963111 0.9795673933224198 1.0932782446490084 0.19667670753459598 0.1071828162045155 423.40554338199644 2893314.20615625 0.034022339233206335 0.03323204448768246 543.188975605483 -2.7349509470561513 0.11371085132658854 LGIYDADGDGDFDVDDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 LGIYDADGDGDFDVDDAK 18 0 Q12797;Q12797-10;E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;E5RHK2;G3XAN5;E5RG29;Q12797-4;Q12797-3;Q12797-9;Q12797-5;Q12797-8 Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase 0 ;; 273.08 1.2415999999999997e-38 1648790000.0 1484790.0 1799030.0 1717250.0 1432050.0 1862030.0 2446070.0 1877780.0 1545340.0 2479980.0 1778990.0 False True 1476796.055615678 1858909.626013401 1959023.8733954208 1613347.3831686063 2099148.483383517 2276978.938329426 1786944.6075837947 1660661.1178775192 1868822.1590294528 1665453.3351300338 0.8867231668789891 1.1161583376746265 1.1762706478008078 0.968713652395815 1.2604066647232848 1.3671826705079348 1.0729478694425716 0.9971225748861102 1.1221101904266448 1.0 20.66748350056871 4.737786319450429 6.816843892146425 1.121342157495399 0.882906382567883 0.2613290632841021 0.11772338683748808 0.16272389090378594 53.5932562895686 0.029722988931441287 0.1801649106955288 54674.68875867602 -4.737786319450429 -0.238435774927516 LGLALNYSVFYYEIQNAPEQACHLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGLALNYSVFYYEIQNAPEQACHLAK 26 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ; 338.97 2.500899999999999e-95 1264670000.0 581490.0 557050.0 568710.0 530730.0 487260.0 670970.0 677380.0 646380.0 882980.0 730480.0 False True 578359.322449612 575591.0725061639 648779.4246840655 597920.3635830274 549309.6727837105 624587.4231934883 644612.5415571097 694616.1578511328 665381.4103258203 683860.1410046087 0.8457274927589532 0.8416795160200524 0.9487019140068484 0.8743313548069441 0.803248558947682 0.913326257436137 0.9426087337246425 1.015728386846356 0.9729787867857854 1.0 19.383341778333858 2.183139525869912 2.234738596471379 0.9957213372939233 0.8671233603566824 0.7013679644007458 0.03744175847553052 0.1739912124341335 1.74402654384628 0.018374643487052658 0.011821216610737612 152.45424651728686 -2.183139525869912 -0.12859797693724095 LGLAVIHGEAQCTELDMDDGRHS(ph)PPMVK ddPTM_BT-474_Trastuzumab_2h_R1 17 LGLAVIHGEAQCTELDMDDGRHSPPMVK 28 1 C9J168;B4DP31;Q14558;Q14558-2;C9JUN4 C9J168 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 1 LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.007)ELDMDDGRHS(0.993)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.394)ELDMDDGRHS(0.606)PPMVK;LGLAVIHGEAQCT(0.001)ELDMDDGRHS(0.999)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK 264.56 3.0826999999999996e-54 9271917000.0 3659333.0 3499762.1 3337734.5999999996 3180469.1999999997 3233536.1999999997 4288008.9 4001781.5 3420576.0999999996 4818644.100000001 4049619.5999999996 True False 3639631.557718119 3616249.5658476315 3807658.6195707833 3583116.274619146 3645307.868399387 3991588.9376302096 3808200.0405551177 3675836.8579154904 3631153.8280778658 3791169.4100742275 0.960028730989064 0.953861242981708 1.0043493729013373 0.9451216463969601 0.9615259763155811 1.0528648303142059 1.004492183977755 0.9695786340087401 0.9577925529861171 1.0 21.85421149473623 LGLDYEER ddPTM_BT-474_Trastuzumab_2h_R1 6 LGLDYEER 8 0 Q99623-2;Q99623;F5GY37;J3KPX7;F5H3X6;F5GWA7 Q99623-2 PHB2 Prohibitin-2 0 ;;;;; 169.06 0.00070539 6176310000.0 4333910.0 5598410.0 5516910.0 5044260.0 6080770.0 8078680.0 5014630.0 4679120.0 6603570.0 5682220.0 False True 4310576.710102667 5784749.692539693 6293642.974158646 5682862.798800365 6855120.0159524735 7520219.86676717 4772053.189153102 5028299.694489921 4976208.6568045495 5319575.85480671 0.8103233843742782 1.0874456630433527 1.1831099219069843 1.0682924642695701 1.2886591343101654 1.4136878713689143 0.8970739997703252 0.945244476577283 0.9354521474316608 1.0 22.34287978938126 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR ddPTM_BT-474_Trastuzumab_2h_R1 12 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR 34 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;;;;;;; 334.79 1.457299999999999e-117 7324220000.0 3311231.0 3662875.0 3240929.0 3548707.0 3446433.0 3649257.0 3653844.0 3467021.0 4143274.0 3957214.0 False True 3293403.700208352 3784791.5801203 3697223.632540141 3997972.942342869 3885315.81394119 3396992.453016975 3477093.6066804444 3725747.712195917 3122219.6397271752 3704661.214578641 0.8889891705206667 1.0216296068386304 0.9979923718775603 1.0791736978836237 1.0487641349367207 0.916950904889515 0.9385726265595706 1.0056918828459391 0.8427814201850813 1.0 21.82091018570279 2.734385682968679 24.98239991388907 0.9463377307885217 1.0115801456878524 0.21572740966636172 0.06270251408042024 586.4905575652751 3509490.045719096 0.019928823538454387 0.019452521511715427 542.4824377611095 -2.734385682968679 0.06524241489933069 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR ddPTM_BT-474_Trastuzumab_2h_R1 6 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;; 181.9 7.4162e-20 3916940000.0 1279260.0 1415207.0 1397460.0 1404680.0 1320358.0 1527816.0 1433976.0 1322111.0 1591334.0 1620748.0 False True 1272372.606299146 1462311.3094843023 1594210.2210599328 1582512.343974915 1488497.764924999 1422201.6760120145 1364609.1025597132 1420773.636363626 1199171.0584831252 1517310.4750478275 0.8385710289511047 0.9637522007077743 1.0506816154483356 1.0429720021046005 0.9810106694729567 0.9373175097648917 0.8993604967478387 0.9363763446758261 0.790326751316553 1.0 20.53308489220739 2.5392534703920675 2.888204744608064 0.9050315326589864 0.9825949710361322 0.16343105542232206 0.07253893459788911 0.4609777154171043 7.615285939869532 0.02649186168287687 0.023586505721070586 346.141339827916 -2.5392534703920675 0.07756343837714585 LGLHQQGSEPSYLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGLHQQGSEPSYLDR 15 0 U3KQC1;A0A0A0MQU0;Q9BV38 U3KQC1 WDR18 WD repeat-containing protein 18 0 219.52 1.7933e-12 615160000.0 450950.0 627550.0 583090.0 579410.0 629700.0 636960.0 653660.0 548830.0 716220.0 610560.0 False True 448522.13530525455 648437.6223880145 665184.0036908638 652763.2465917541 709888.5624756862 592928.4544425594 622039.9685763092 589786.4815022711 539717.1778563035 571593.5380732855 0.7846872041575605 1.134438336328562 1.1637360456051533 1.142005993965701 1.2419464447911053 1.0373253281364747 1.0882557746769974 1.0318284623900928 0.9442324692395403 1.0 19.124630081139397 1.5585571120141823 2.3630828205077967 0.9719579344201335 1.097347609790314 0.1255678264480663 0.11488460849845074 0.5079356917005543 6.1097949011024575 0.08702875828397269 0.031265273113745974 36.18737759130176 -1.5585571120141823 0.12538967537018064 LGLLGALMAEDGVRGS(ph)PPVPSGPPMEEDGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGLLGALMAEDGVRGSPPVPSGPPMEEDGLR 31 1 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 1 LGLLGALMAEDGVRGS(0.999)PPVPS(0.001)GPPMEEDGLR;LGLLGALMAEDGVRGS(0.999)PPVPS(0.001)GPPMEEDGLR;LGLLGALMAEDGVRGS(1)PPVPSGPPMEEDGLR;LGLLGALMAEDGVRGS(0.997)PPVPS(0.003)GPPMEEDGLR 181.38 1.9044e-18 351303000.0 141340.0 197651.0 187441.0 223313.0 205924.0 195346.0 208152.0 171520.0 277509.0 221779.0 True False 140579.04114435022 204229.69405244733 213831.06353362158 251584.40290320246 232147.20079282706 181842.19081502155 198082.89254214123 184319.69336091235 209120.62538008587 207624.87434544516 0.6770818842758481 0.9836475263202378 1.0298913567449082 1.2117257322675974 1.1181088081314465 0.8758208349952977 0.9540422031156631 0.8877534252193802 1.0072041032624641 1.0 17.66361976950582 -1.1059571803823964 13.236910533016879 1.0000000000000366 0.9751519096994434 0.003265022577404908 0.13685623525071375 0.0 0.0 0.1364585439483145 0.03216358725889858 0.07835068894569486 1.1059571803823964 -0.024848090300593206 LGLPLLTDCAQPSRPHGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 LGLPLLTDCAQPS(0.072)RPHGS(0.883)PS(0.045)R;LGLPLLTDCAQPS(0.07)RPHGS(0.892)PS(0.037)R 133.47 5.948e-06 1023190000.0 324180.0 395710.0 334230.0 352640.0 331820.0 362380.0 392080.0 321930.0 387760.0 356630.0 True False 322434.65089978394 408880.9681382533 381286.67882076063 397284.18784300616 374075.3101487731 337329.52355076355 373113.5925089491 345954.0513274166 292201.74371779646 333869.568073696 0.9657503460411583 1.2246727681631644 1.1420228594676773 1.1899383047553242 1.1204235004317684 1.0103631951154766 1.1175429814153972 1.0361952223541775 0.8751972975665093 1.0 18.348925073408346 1.5008239434646191 3.385031879295981 0.9383119109814863 1.1149806920417553 0.43570738387810615 0.07758871579334878 0.18760693060979045 4.460281173620785 0.05325169407962763 0.019897766830849935 31.682828278533233 -1.5008239434646191 0.17666878106026906 LGLSDMNLYDHELVFGVSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGLSDMNLYDHELVFGVSLK 20 0 Q13867;K7ESE8;J3KSD8 Q13867 BLMH Bleomycin hydrolase 0 97.488 0.00093453 69685000.0 68289.0 81585.0 82850.0 73436.0 61475.0 84022.0 97942.0 76800.0 118800.0 84096.0 False True 67921.33961162108 84300.50740582612 94514.55985489057 82732.99007043734 69303.47685912783 78213.75690651334 93204.17128522614 82531.20598249804 89523.33183844191 78728.92128179203 0.8627241235595277 1.070769242526414 1.2005062220603466 1.050858931171096 0.8802797717889719 0.9934564786752916 1.183861912087215 1.0482959075115053 1.1371085794255171 1.0 16.26460609056885 2.2825952065537263 24.999871173055322 1.094319853875066 1.0171908053911938 0.13606889979491565 0.10081655809149354 307.1697100261561 174389.0035938496 0.03647898241739208 0.03052036209864756 191.68812376667066 -2.2825952065537263 -0.07712904848387225 LGLVEFNILWNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGLVEFNILWNR 12 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 152.62 0.00013811 280510000.0 266150.0 318180.0 299170.0 269545.0 271260.0 311450.0 319460.0 264780.0 336150.0 298500.0 False True 264717.0779720449 328770.4289561285 341290.53556774417 303669.36936292826 305803.35311601503 289920.1945744396 304006.4993442887 284539.22812559636 253310.3366792279 279449.4744412928 0.9472806434912693 1.1764932806312973 1.221296036609448 1.0866700321052978 1.0943064170273067 1.037469099392944 1.087876439746731 1.0182135024389636 0.9064620256870218 1.0 18.092227936173416 1.7924756293201212 1.0966394823179506 0.9558328789755859 1.1110679772482341 0.35430770446414117 0.07379040017770673 0.5200506073925956 1.1595712793255142 0.06212436016426962 0.025380383652606153 62.01198443024703 -1.7924756293201212 0.15523509827264825 LGMENDDTAVQYAIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGMENDDTAVQYAIGR 16 0 Q05048;A0A0A0MSZ9;A3KFI9 Q05048 CSTF1 Cleavage stimulation factor subunit 1 0 ; 167.32 3.7008e-09 74550000.0 87111.0 106589.0 96128.0 114705.0 94873.0 97150.0 98338.0 89653.0 101900.0 100533.0 False True 86642.00405494189 110136.75043058896 109661.98684044559 129226.6412390314 106954.51419367282 90434.24916650128 93581.01525235933 96343.36210870967 76788.11039004399 94116.89786936849 0.9205786210165837 1.1702122883762653 1.1651678850768459 1.373043992784316 1.1364007592145946 0.9608715460641444 0.994306201870859 1.0236563708509756 0.8158801674129087 1.0 16.522166149089205 2.7807106110585615 5.1258077012371 0.9682126925783258 1.168837354417413 0.41397843633179643 0.11482229821246653 0.20743081162826185 13.577720244136827 0.036547711052433526 0.038139227238609956 603.5463266891948 -2.7807106110585615 0.20062466183908734 LGMLS(ph)PEGTCK ddPTM_BT-474_Trastuzumab_2h_R1 11 LGMLSPEGTCK 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 LGMLS(0.5)PEGT(0.5)CK;LGMLS(0.999)PEGT(0.001)CK;LGMLS(0.998)PEGT(0.002)CK;LGMLS(0.997)PEGT(0.003)CK;LGMLS(1)PEGTCK;LGMLS(0.998)PEGT(0.002)CK;LGMLS(0.996)PEGT(0.004)CK;LGMLS(1)PEGTCK;LGMLS(0.984)PEGT(0.016)CK;LGMLS(1)PEGTCK;LGMLS(0.999)PEGT(0.001)CK 164.68 2.3585e-05 6933280000.0 11659260.0 10307440.0 9186510.0 8899900.0 9184210.0 11972390.0 11191520.0 10811400.0 15550460.0 11824000.0 True False 11596487.83962556 10650516.90942093 10479890.757423662 10026626.427472703 10353764.704422465 11144766.85927461 10650143.421841837 11618201.567176806 11718257.498488372 11069382.196964301 1.0476183433982262 0.9621600121768095 0.946745768729324 0.9057981962374047 0.935351632113842 1.0068101959954896 0.9621262715784231 1.0495799458765651 1.0586189265108237 1.0 23.40007136905476 1.7482848690843036 6.728905614806477 1.0399665986593467 0.9636231679281784 0.3928374265705793 0.039268176172336716 0.13875447621378686 18.29427688260802 0.019896604504027214 0.010564960785575096 56.01248867137795 -1.7482848690843036 -0.07634343073116834 LGNDFHTNK ddPTM_BT-474_Trastuzumab_2h_R1 4 LGNDFHTNK 9 0 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73;A0A0J9YYC4 H3BNC9 RPS17 40S ribosomal protein S17 0 ;;; 105.98 0.0030108 2296880000.0 7031700.0 6583800.0 6178100.0 5416200.0 5262030.0 7204000.0 6997500.0 6410800.0 9754700.0 7357800.0 False True 6993842.108495313 6802937.803008848 7047922.778992137 6101890.364664507 5932118.330004652 6706004.436391913 6659004.191954115 6889206.449382797 7350784.891283255 6888218.904670491 1.0153338918647323 0.9876192811462744 1.0231850753484852 0.8858444322272016 0.8611977075790138 0.973546939956419 0.9667236602250027 1.0001433672079783 1.0671532065130982 1.0 22.71569956102297 -0.408508412736147 6.686953876655774 0.9999974373471688 0.9728911119721915 0.013422102559756843 0.058537874733013466 0.0 0.0 0.05977883587020547 0.014090006738419977 0.39038362029736295 0.408508412736147 -0.02710632537497737 LGNDFHTNKR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGNDFHTNKR 10 1 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73;A0A0J9YYC4 H3BNC9 RPS17 40S ribosomal protein S17 0 ;;; 164.43 3.9999e-06 6670410000.0 5112480.0 6121630.0 5440940.0 5309520.0 5156630.0 5736240.0 5764180.0 5344640.0 8281610.0 6305590.0 False True 5084954.975729927 6325384.753946515 6206977.058501721 5981704.687602656 5813296.264759403 5339707.230456526 5485344.592094044 5743484.1763320025 6240718.183388539 5903161.847712801 0.8613951483813899 1.0715248738093308 1.0514665222852793 1.0133052153940667 0.9847767035240247 0.9045503694812997 0.9292214466759637 0.9729504839101327 1.0571822938933184 1.0 22.49305646619888 3.004330286360501 14.399534778655957 0.9653630666142993 1.0071378908506603 0.02466361521019733 0.06487075777004365 1.843840722639548 6082.448459085456 0.01891091302749199 0.022252967562464615 1010.020727401289 -3.004330286360501 0.04177482423636103 LGNIEFKPESR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGNIEFKPESR 11 1 E9PDF6;O43795;O43795-2;E7EQD9 E9PDF6 MYO1B Unconventional myosin-Ib 0 102.97 0.0025509 588510000.0 381820.0 455990.0 390340.0 400290.0 396450.0 459490.0 533800.0 435570.0 644100.0 483940.0 False True 379764.32354419027 471167.35149822396 445296.47910389863 450966.6729573415 446935.55755675014 427726.5378231155 507978.0546859743 468074.445179644 485370.1854978154 453054.53487812105 0.83823092874758 1.0399793296958733 0.9828761105408437 0.9953915880759449 0.9864939497338504 0.944095036899213 1.1212293787603926 1.0331525437783413 1.071328390142674 1.0 18.78932519460409 2.253542586886873 24.99980512991276 1.0586162247301534 0.9711791669725237 0.38254776339152663 0.05680328617604056 245.35665123187061 409416.07772606384 0.01857832024892968 0.015483568770855589 179.28443499390545 -2.253542586886873 -0.08743705775762967 LGNPTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGNPTDR 7 0 O95292;E5RK64;O95292-2 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 0 89.296 0.041823 248860000.0 188800.0 282690.0 280540.0 240750.0 243640.0 266780.0 257980.0 218920.0 258320.0 251930.0 False True 187783.52177765197 292099.16576028627 320037.5935026068 271228.92531534657 274666.1098325808 248338.12653257005 245500.52182069654 235256.9220532351 194660.49731065935 235851.61171187568 0.7961935066488105 1.2384870454780885 1.356944695775815 1.1499981846496306 1.164571689118335 1.052942249281503 1.0409109356463007 0.9974785431639658 0.8253515670202975 1.0 17.847519934116217 2.091395881654924 1.216896847197491 0.9275211293880629 1.157748501795491 0.2658799723782578 0.14120270339613172 0.6048267122700934 1.6774948494439916 0.10036808491473302 0.05020000192121145 123.42293838808125 -2.091395881654924 0.23022737240742808 LGNSCEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LGNSCEFR 8 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ;; 116.25 0.005368199999999999 817180000.0 609150.0 796000.0 765510.0 715330.0 618040.0 735350.0 724380.0 612830.0 890650.0 761780.0 False True 605870.4040829267 822494.3788078382 873287.1540678011 805890.7046555629 696743.7305899207 684516.9853277066 689338.9719996752 658562.4864876862 671161.2415985555 713162.5482073305 0.8495544327249054 1.1533056255903145 1.224527502548997 1.1300238727921457 0.9769774539357379 0.9598330521539163 0.9665944653606103 0.9234395274164466 0.9411055632206805 1.0 19.443871416134623 3.165361529191787 5.341793069553262 0.9537254300019373 1.1033827785630155 0.30954991835965073 0.09270517662140017 0.22328863822120196 11.431490502806831 0.027366481965490894 0.033257010303096954 1463.3948731391517 -3.165361529191787 0.14965734856107815 LGNSGAS(ph)PSSAGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LGNSGASPSSAGK 13 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 LGNSGAS(0.86)PS(0.139)S(0.001)AGK;LGNS(0.001)GAS(0.999)PS(0.001)SAGK;LGNSGAS(0.999)PS(0.001)SAGK;LGNSGAS(0.983)PS(0.017)SAGK 224.35 2.9143e-08 261720000.0 1208460.0 1185500.0 1075990.0 1066100.0 1066280.0 1382280.0 1390360.0 1272860.0 1829260.0 1373860.0 True False 1201953.7856325281 1224958.6508501158 1227480.0393272613 1201068.1506903046 1202064.4376632916 1286726.2371371204 1323102.9751090137 1367847.276652116 1378463.3838281846 1286179.0785792784 0.9345151119704217 0.9524013189541327 0.9543616901956946 0.9338265337180045 0.9346011435601173 1.0004254139776916 1.0287082080129322 1.0634967551820613 1.0717507435674074 1.0 20.29466009674244 2.4396640875327305 2.119746595101381 1.0500657714017183 0.9425177999607526 0.8456041887618388 0.019924279193663998 0.10593423098727378 0.9695537940315534 0.007959681881499248 0.006354766150297248 275.20992218644074 -2.4396640875327305 -0.10754797144096573 LGPGRPLPTFPTSECT(ph)SDVEPDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 LGPGRPLPTFPT(0.008)S(0.048)ECT(0.563)S(0.381)DVEPDTR 114.06 0.0021261999999999995 795110000.0 271500.0 300080.0 227390.0 250550.0 257000.0 248620.0 237070.0 258280.0 315980.0 251020.0 True False 270038.2741664854 310067.9813978092 259404.53549068893 282269.60431053 289727.4266416566 231433.48458852817 225602.01840465367 277554.1651192655 238110.9629150746 234999.688690966 1.1491005612420047 1.3194399666016623 1.1038505494865412 1.2011488435702817 1.2328842997858596 0.9848246432907938 0.9600098606995576 1.1810831183025963 1.0132394823220385 1.0 17.842299320059865 2.7452455859578038 24.837183415389884 1.045010771419585 1.202428450481865 0.5530779564828237 0.07718870308332965 418.3923170180301 1554485.2262908323 0.024380261182719645 0.02534044954939335 556.2187003336262 -2.7452455859578038 0.15741767906227988 LGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_BT-474_Trastuzumab_2h_R1 3 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 LGPGRPLPTFPTS(0.004)ECT(0.05)S(0.946)DVEPDTR;LGPGRPLPTFPTS(0.002)ECT(0.212)S(0.785)DVEPDTR;LGPGRPLPTFPTS(0.002)ECT(0.084)S(0.914)DVEPDTR 186.59 1.2659999999999999e-17 2077340000.0 672980.0 763110.0 663690.0 640530.0 697910.0 748360.0 613940.0 691080.0 830190.0 683670.0 True False 669356.7504551066 788509.6550402631 757131.7831031063 721621.0323249797 786784.7016633414 696627.6346499528 584241.3767214442 742651.8988331342 625600.7984760616 640037.5952806645 1.0458084890491242 1.2319739666144014 1.1829489215724813 1.127466632657008 1.229278885279116 1.088416742682862 0.9128235294760256 1.160325431363875 0.977443830001467 1.0 19.28779712475567 2.482538717636864 24.996515276850698 1.0318902468874613 1.1656257996038175 0.4533910781448133 0.07695458078110816 232.95081632927867 1074858.2508906801 0.025217461059702996 0.021695474158980627 303.76568889717566 -2.482538717636864 0.13373555271635618 LGPLFSLLNENHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGPLFSLLNENHR 13 0 Q16401-2;Q16401;F2Z3J2 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ; 207.34 5.4658e-08 724640000.0 621180.0 842430.0 861030.0 734890.0 556640.0 686760.0 755670.0 605170.0 1017310.0 706660.0 False True 617835.6358995865 870469.7732903113 982255.5397930775 827926.9986500306 627524.8045362334 639285.8976591503 719115.3551602673 650330.8583909937 766607.5817556013 661560.3537979366 0.9339066834230136 1.3157828583485263 1.4847557507853506 1.251476141061059 0.9485526164524382 0.9663304247134651 1.0869988671961894 0.9830257430898394 1.1587870665988396 1.0 19.335513253243242 3.270367033573607 10.76633509905408 1.022093199288947 1.2686972397070488 0.37506644010215473 0.1395371537518094 0.5161380332835658 171.04141957643915 0.03899997527133305 0.05252022782981861 1863.6615001559835 -3.270367033573607 0.2466040404181018 LGPQNFIDETS(ph)DIENLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGPQNFIDETSDIENLLK 18 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 LGPQNFIDET(0.098)S(0.902)DIENLLK;LGPQNFIDET(0.013)S(0.987)DIENLLK 263.92 6.586799999999999e-31 133928000.0 305674.0 218265.0 198729.0 173509.0 174355.0 236083.0 213876.0 237906.0 336600.0 245335.0 True False 304028.2851475744 225529.8185810214 226708.31581656678 195475.2216097216 196558.07576694989 219763.13788960502 203530.00079433763 255659.75378219 253649.440208919 229677.5102581393 1.3237181333334322 0.981941237204913 0.9870723326884058 0.851085599935418 0.8558002720685809 0.9568335081767854 0.8861555516061893 1.11312489191845 1.1043721256114156 1.0 17.809250071128574 -0.22565122031796614 7.2062774731859065 1.0000000482477853 0.9979191518028749 0.0 0.13676970503945615 0.0 0.0 0.13373147579232747 0.031520811130279804 0.5947696233143097 0.22565122031796614 -0.002080896444910385 LGPQNFIDETS(ph)DIENLLKEEEDYKEENNDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGPQNFIDETSDIENLLKEEEDYKEENNDSK 31 2 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 LGPQNFIDET(0.439)S(0.561)DIENLLKEEEDYKEENNDSK 129.07 2.5236000000000003e-06 19899000.0 17564.0 8799.0 7719.1 5414.1 4430.4 9476.2 10061.0 11389.0 25053.0 10533.0 True False 17469.437375543854 9091.869395892176 8805.882184380027 6099.52450487982 4994.585178961854 8821.13259857539 9574.310993247635 12238.905012170177 18879.023843000734 9860.774922245011 1.771608977316214 0.9220238234402598 0.8930213146346904 0.6185644184129837 0.5065104130603898 0.8945678882372335 0.9709491463646391 1.2411707100788114 1.9145578305830075 1.0 13.267485311848434 1.6018028683799423 3.471613234808622 1.4868129258845062 0.90560245845765 0.23122276929290353 0.37760894598948236 0.24511243058199442 6.913639296225428 0.23552495118815803 0.09953755588836612 39.97632511033367 -1.6018028683799423 -0.5812104674268562 LGPSDYFGEIALLLNRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGPSDYFGEIALLLNRPR 18 1 P31321;H7BYW5 P31321 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 0 86.641 0.0031100000000000004 151720000.0 23153.0 26970.0 24758.0 24009.0 28507.0 29065.0 28105.0 28390.0 38478.0 29960.0 False True 23028.346820540122 27867.68014629071 28243.71119960626 27048.536938301753 32137.197475773206 27055.804961650614 26745.453778473806 30508.605961498954 28995.612478784242 28047.927149953535 0.8210356044289095 0.9935736069657067 1.0069803393529224 0.9643684823370828 1.1457958124305256 0.964627611053084 0.9535625800610408 1.0877312180108645 1.0337880701045772 1.0 14.775606533592637 5.481003843839528 1.248373969805227 1.0259981436936096 1.6772838887444178e-18 0.5211465163845007 0.05656118679867831 6.152058525552968 2.1192628664798545 0.015526549864497302 12.744298670456374 302694.0218727155 -5.481003843839528 -1.0259981436936096 LGPSDYFGEIALLMNRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGPSDYFGEIALLMNRPR 18 1 P10644 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 0 ; 294.39 2.6127e-49 707890000.0 327620.0 396810.0 345880.0 356350.0 364170.0 382460.0 404630.0 344430.0 475900.0 373680.0 False True 325856.1303220038 410017.58097329 394576.89755714586 401463.873462611 410544.89089530037 356021.4404139998 385056.5010632933 370133.11558010144 358620.82173328684 349831.42247645685 0.9314661559423909 1.1720433175235527 1.127905820363236 1.1475923764098948 1.1735506433042888 1.017694287990838 1.1006915797828511 1.058032788935679 1.0251246706045152 1.0 18.41630035493408 1.479499787293551 0.905738199401538 1.0005084718251884 1.1090350038717485 0.18650887055248477 0.06994699659719338 0.806830500498557 1.3385300757238647 0.062032216591979154 0.02378532180074715 30.16475395768528 -1.479499787293551 0.10852653204656004 LGQELCGMLHRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGQELCGMLHRPR 13 1 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 0 ; 142.1 2.4135e-05 666170000.0 293090.0 365660.0 370130.0 385210.0 339680.0 364220.0 384150.0 314620.0 440080.0 385830.0 False True 291512.0360053602 377830.7720538619 422241.0867723671 433977.5465035286 382936.23455890303 339042.3286816583 365567.19690449076 338098.5420079888 331628.1807698782 361205.9990743178 0.8070520333339809 1.0460257388364238 1.1689758416373683 1.201468269119855 1.0601602286237617 0.9386398054033999 1.0120739905797513 0.9360269288839395 0.9181137124515089 1.0 18.46246232839317 2.775334562414292 7.44911419625497 0.9596061665447536 1.0707270336236736 0.1741964123693649 0.10201917151401504 0.4210448897962788 73.62849113785248 0.03300474287726218 0.03470001856039677 596.1211936752867 -2.775334562414292 0.11112086707892 LGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQAR 34 0 Q9NR31;Q5SQT8;Q9NR31-2 Q9NR31 SAR1A GTP-binding protein SAR1a 0 164.55 9.2847e-15 92864000.0 16169.0 21150.0 22740.0 18802.0 21905.0 24664.0 20685.0 11669.0 25846.0 22937.0 False True 16081.947900544783 21853.964964555023 25941.59434037671 21182.33127218751 24694.471908892967 22959.035732810964 19684.387525626422 12539.800033981375 19476.599618656313 21473.141022646323 0.7489331851164299 1.017734896888493 1.2080950017055165 0.9864570464958008 1.1500167526888272 1.0691978275836573 0.9166980976312027 0.5839760480665807 0.9070214552270491 1.0 14.390245619015793 1.9941444912493551 7.996467622624374 0.7754685017845837 1.0374538847295742 0.23669016408485233 0.15278739708790998 0.13184962381939194 70.94136495076314 0.05991702346452188 0.0411566767349769 98.66076787587636 -1.9941444912493551 0.2619853829449905 LGQLNIDIS(ph)NIKAIGVS(ph)NQRETTVVWDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGQLNIDISNIKAIGVSNQRETTVVWDK 28 2 A6NP46;P32189-1;P32189-4;P32189-2;P32189 A6NP46 GK Glycerol kinase 2 LGQLNIDIS(0.949)NIKAIGVS(0.713)NQRET(0.173)T(0.165)VVWDK 41.476000000000006 0.088337 268800000.0 161270.0 125220.0 112700.0 108410.0 126540.0 149190.0 152560.0 133990.0 225640.0 174540.0 True False 160401.74023878138 129387.87200291138 128567.18039403945 122134.69488447222 142654.1189386584 138876.84645548448 145180.08996420438 143989.01418743382 170034.04542109478 163400.707768788 0.9816465450428148 0.7918440119977644 0.7868214412875248 0.7474551154165917 0.8730324420657587 0.849915819532405 0.888491194111804 0.8812019002462232 1.0405955258265647 1.0 17.318054706955348 1.4060477973725536 1.9359767337551441 1.0242165709227893 0.8362863615522654 0.5303838205090512 0.0633301030902735 0.24308483728208882 1.6488211933971821 0.055797006974174834 0.017365185948970935 25.47110565825208 -1.4060477973725536 -0.18793020937052385 LGQMVLSGVDTVLGKS(ph)EEWADNHLPLTDAELAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGQMVLSGVDTVLGKSEEWADNHLPLTDAELAR 33 1 O60664-4;O60664;O60664-3;K7ERZ3 O60664-4 PLIN3 Perilipin-3 1 LGQMVLS(0.001)GVDT(0.001)VLGKS(0.999)EEWADNHLPLTDAELAR 158.48 3.7460000000000005e-14 124430000.0 51370.0 50272.0 43703.0 52136.0 36483.0 48457.0 62057.0 46656.0 80043.0 65399.0 True False 51093.429627743535 51945.273129934234 49856.00252671432 58736.4122543755 41128.89379831735 45107.28164550847 59055.06582923849 50137.70763436752 60317.47517124916 61225.17982909916 0.8345166117986608 0.84842989885749 0.8143055302716925 0.959350587753753 0.6717643608907715 0.7367439633728906 0.964555204151001 0.8189066618394484 0.9851743243485162 1.0 15.901837485793477 1.2476346679885384 1.345778516783394 1.0074297146545692 0.8230593239259163 0.35299972205840613 0.08479899567070817 0.4494408339813561 1.5752292612554448 0.07815441213776272 0.024468144943267694 17.686205545400476 -1.2476346679885384 -0.1843703907286529 LGQSDPAPLQHQMDIYQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGQSDPAPLQHQMDIYQK 18 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 140.97 1.233e-07 568720000.0 836780.0 786300.0 968730.0 759850.0 438010.0 791100.0 907980.0 732810.0 1363400.0 802910.0 False True 832274.8694549979 812471.5201716116 1105118.7636478948 856046.9320908245 493787.9772113316 736413.1190490907 864057.5385795644 787496.0033337803 1027408.3386240043 751667.596394165 1.1072379246458344 1.0808920380087288 1.4702227007646405 1.1388636894784065 0.6569233256562991 0.9797058202079593 1.1495208024458508 1.0476652274376177 1.3668386711793872 1.0 19.51973528653479 3.472461565257802 24.998329811047203 1.0300374648201003 1.2220864070074813 0.1623311681731201 0.1911463803461619 231.93132769682109 1244259.874782517 0.054594493421507836 0.07419443581099963 2967.984067433263 -3.472461565257802 0.192048942187381 LGS(ph)FGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGSFGK 6 0 Q6GQQ9;Q6GQQ9-2 Q6GQQ9 OTUD7B OTU domain-containing protein 7B 1 LGS(1)FGK;LGS(1)FGK 74.486 0.084125 216404000.0 931630.0 548510.0 483490.0 445570.0 438970.0 628650.0 562370.0 581170.0 1035270.0 621870.0 True False 926614.2075938239 566766.8237687025 551561.1894295836 501979.1163146788 494870.2275209649 585192.905182923 535166.0146379755 624539.8565214636 780141.5804072703 582181.7241903072 1.591623661636837 0.9735221842577699 0.9474038199957061 0.8622378468043231 0.8500270739505362 1.0051722355194226 0.9192422097795655 1.0727575782116274 1.3400310384052057 1.0 19.151110025622234 4.739484982195522 24.64697706806682 0.9893170536774505 1.5916238943435113 0.64795448081741 0.13145175652231622 40.401701626648475 1077056.9687958965 0.03241962344997287 0.19703116685690145 54888.95748021257 -4.739484982195522 0.6023068406660608 LGS(ph)LSAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGSLSAR 7 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;H0Y4T4;Q00G26 Q5SW79;Q00G26 CEP170;PLIN5 Centrosomal protein of 170 kDa;Perilipin-5 1 LGS(0.873)LS(0.127)AR;LGS(0.556)LS(0.444)AR;LGS(0.989)LS(0.011)AR;LGS(0.994)LS(0.006)AR 158.61 0.0014833 1264320000.0 1333190.0 774960.0 652110.0 738070.0 752710.0 847760.0 765760.0 824440.0 1487560.0 935000.0 True False 1326012.2531713326 800754.0751267866 743921.4197582693 831509.5863239778 848563.1568382931 789156.346612384 728717.2633127228 885963.8992214928 1120970.7702827665 875327.4995062266 1.5148755796194429 0.9148051164604025 0.8498778116509722 0.9499411212295209 0.9694236240915185 0.9015555287107375 0.8325081340684408 1.012151337323763 1.2806301309111248 1.0 19.73946336968361 4.741299398959879 24.842394444163762 0.9583122593174865 1.514875798423976 0.6549785562922694 0.11891920843322319 142.18471502845475 1289623.3482256017 0.028592180375486737 0.19815626245266224 55118.75495132608 -4.741299398959879 0.5565635391064895 LGS(ph)LVDEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGSLVDEFK 9 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 LGS(1)LVDEFK;LGS(1)LVDEFK 142.07 0.00011036 59904000.0 260770.0 162365.0 114965.0 136010.0 120982.0 182862.0 168781.0 168925.0 324200.0 185790.0 True False 259366.0432942705 167769.22087328497 131151.0727063064 153228.85205458043 136388.3405835055 170221.18035084681 160616.41822396673 181531.0412837691 244305.25405743188 173932.72313717825 1.491186009257799 0.9645638718653751 0.7540333431269827 0.8809662109051845 0.7841442261324107 0.978661043653044 0.9234399101386509 1.0436853859902955 1.4045962694711094 1.0 17.408169856572567 1.4579378420925926 5.670641896039571 1.211932078305831 0.9526787322671729 0.15671426431077196 0.21153554392405702 0.2688167096801073 18.96020246976767 0.130808951004559 0.05313988251402801 28.703697341967437 -1.4579378420925926 -0.259253346038658 LGS(ph)PKPER ddPTM_BT-474_Trastuzumab_2h_R1 7 LGSPKPER 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER 114.83 0.0015625 25587100000.0 25149000.0 16013830.0 12514260.0 11947200.0 11938550.0 17811560.0 18399330.0 17777330.0 31506900.0 16221710.0 True False 25013600.578316566 16546840.65098536 14276159.032102138 13459714.295025988 13458853.577170227 16580288.78110227 17509284.115633756 19103964.636052623 23742446.66583001 15186426.579695348 1.64710246001916 1.0895809204456908 0.9400604518241137 0.8862989739154292 0.8862422971290078 1.091783422129769 1.1529561627778935 1.2579631248864778 1.5633991670940077 1.0 23.85627910269921 1.8390209018862704 2.5115310631577996 1.3099766711826775 1.0671264092081825 0.09537045602212513 0.24106185429422505 0.5409872893455847 6.319300723147318 0.14236622781001132 0.06904862577791697 69.027302475754 -1.8390209018862704 -0.242850261974495 LGS(ph)PLAVDEALR ddPTM_BT-474_Trastuzumab_2h_R1 3 LGSPLAVDEALR 12 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 LGS(1)PLAVDEALR;LGS(1)PLAVDEALR;LGS(1)PLAVDEALR 177.38 2.4498e-05 138264000.0 255485.0 216775.0 191794.0 173761.0 181850.0 250226.0 235529.0 197155.0 297474.0 217305.0 True False 254109.49714705194 223990.22483174544 218796.9280966674 195759.12478388342 205007.51959060415 232928.46558864604 224135.5624618452 211867.70723280447 224165.51864737933 203436.40885582924 1.2490856409441122 1.1010331242648026 1.0755052614585023 0.9622619957011406 1.0077228591657275 1.14496941279433 1.1017475373382402 1.0414443924978556 1.1018947881951668 1.0 17.63421837474885 4.752905364141381 2.182636046401205 1.0560788894313948 1.3042788951069495 0.5606191692391682 0.0518464007884884 0.5321625395424812 2.7956069658420213 0.013696992833757885 0.26055995394198633 56611.59149096051 -4.752905364141381 0.24820000567555467 LGS(ph)PSGK ddPTM_BT-474_Trastuzumab_2h_R1 8 LGSPSGK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 LGS(0.92)PS(0.08)GK;LGS(0.96)PS(0.04)GK;LGS(0.954)PS(0.046)GK;LGS(0.982)PS(0.018)GK;LGS(0.977)PS(0.023)GK;LGS(0.943)PS(0.057)GK;LGS(0.99)PS(0.01)GK;LGS(0.769)PS(0.231)GK 150.17 0.0020629000000000003 6190210000.0 18814300.0 13401830.0 11385260.0 10164600.0 10968130.0 11805160.0 15537230.0 13984270.0 25350290.0 16898000.0 True False 18713005.899265237 13847901.809972683 12988205.645546073 11451437.31780009 12364856.34230022 10989097.075557536 14785634.826917501 15027847.238084218 19103050.705982633 15819555.172894334 1.1829034188855463 0.8753660680484912 0.821022178158361 0.7238785915688262 0.7816184593790922 0.6946527228772248 0.9346428938944894 0.9499538434451905 1.2075592832543314 1.0 23.915205697721234 1.571864800804982 2.4714018201927463 1.0988376611847948 0.8413988826646326 0.3217975614966442 0.13766089053946018 0.2863041964097169 3.8536840209989442 0.10306928144960531 0.037996075412864976 37.31339802502671 -1.571864800804982 -0.25743877852016217 LGS(ph)PVDNLEDMDRDDLTDDSVFTR ddPTM_BT-474_Trastuzumab_2h_R1 8 LGSPVDNLEDMDRDDLTDDSVFTR 24 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR 288.48 1.2535999999999996e-53 3055177000.0 524427.0 474508.0 446822.0 397472.0 400339.0 565853.0 516705.0 493994.0 769732.0 490784.0 True False 521603.54330131714 490301.7119338569 509730.653753553 447791.91444627824 451319.7986548416 526736.9139846864 491710.0051452162 530858.3407307052 580041.8624803673 459461.7449386777 1.135249123669552 1.0671219472239093 1.109408257311138 0.9746010835048803 0.982279381529527 1.1464216984049185 1.070187040731416 1.155391817879324 1.2624377739169186 1.0 18.80958522129435 2.1561920888601036 1.7269768208679321 1.1487089647261735 1.0578202928751295 0.12656828755406824 0.08015264989661439 0.623358645012794 3.6195105425111294 0.04429403154038633 0.0254371899175299 143.28214974461685 -2.1561920888601036 -0.09088867185104399 LGS(ph)SSNLQFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGSSSNLQFK 10 0 Q8TDM6-4;Q8TDM6;Q8TDM6-2;A0A0J9YYG8;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 LGS(0.497)S(0.497)S(0.006)NLQFK 141.58 3.9089e-05 60937000.0 187450.0 95184.0 88726.0 100340.0 87107.0 109770.0 106340.0 95339.0 203140.0 137490.0 True False 186440.79002765278 98352.14190005699 101217.849579783 113043.03371190808 98199.56012636115 102181.85827078589 101195.92794175062 102453.68030163251 153078.8689365413 128715.27048888877 1.448474523026754 0.7641062441658556 0.7863701734482277 0.8782410453906976 0.7629208232510232 0.7938596398288783 0.7861998623581051 0.7959714485506733 1.1892828904846662 1.0 16.973823696229353 4.743175948084941 24.65676305411707 0.8429845969889285 1.4484748221294608 0.6438755349722571 0.13019392739736296 227.7431319572744 1216633.7647850548 0.029525347347586703 0.23795153298579672 55357.43363724557 -4.743175948084941 0.6054902251405323 LGS(ph)VDSFER ddPTM_BT-474_Trastuzumab_2h_R1 2 LGSVDSFER 9 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 LGS(0.999)VDS(0.001)FER;LGS(0.922)VDS(0.078)FER 168.05 6.2435e-05 807910000.0 1585810.0 1239590.0 1109830.0 1100730.0 1139840.0 1487300.0 1366130.0 1362230.0 2003420.0 1374120.0 True False 1577272.175160055 1280849.0038020217 1266084.4171847098 1240082.3051396103 1284991.8676390124 1384486.4517276092 1300045.0727766014 1463886.5198637792 1509703.9854526215 1286422.4851566802 1.2260918892193886 0.9956674565168381 0.9841902110646851 0.9639774797535307 0.9988879100496338 1.0762299848630097 1.0105895129921194 1.137951595805234 1.1735677842017405 1.0 20.294933097791755 1.739173453522125 9.639574179147106 1.1157367104927682 1.0302322500845977 0.11633030224618157 0.0817336920972697 0.1629209450601242 65.86101278505635 0.03807034195224418 0.020585887378422825 54.84959858118325 -1.739173453522125 -0.0855044604081705 LGS(ph)VSLDLCDGDTGEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGSVSLDLCDGDTGEPR 17 0 Q8N6R0-3;Q8N6R0-4;Q8N6R0;Q8N6R0-2 Q8N6R0-3 METTL13 Methyltransferase-like protein 13 1 LGS(0.99)VS(0.01)LDLCDGDTGEPR 196.22 1.6989000000000002e-11 88398000.0 73975.0 82590.0 77534.0 63065.0 66716.0 74740.0 77375.0 60313.0 71215.0 66090.0 True False 73576.72681939517 85338.95822329073 88450.11326239076 71049.0225337999 75211.88714328704 69573.39971903551 73632.075648796 64813.862323208385 53665.01748210973 61872.07961750425 1.1891749440822021 1.37928058586134 1.4295642527161365 1.1483212294305911 1.215603024954875 1.1244716542443884 1.1900695128399197 1.0475462070111488 0.8673543513305045 1.0 15.917000905555923 2.2646274285735983 0.6285652817712342 0.9431744929675919 1.3225119138951398 0.6679299313814717 0.09127316435912884 0.465593462838804 0.3649347741338974 0.08112105756353105 0.05855557371857228 183.91935219151034 -2.2646274285735983 0.37933742092754785 LGS(ph)YSGPTSVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGSYSGPTSVSR 12 0 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YFI4 V9GYZ0 PANK2 Pantothenate kinase 2, mitochondrial 1 LGS(0.999)YS(0.001)GPTSVSR;LGS(0.999)YS(0.001)GPTSVSR;LGS(0.998)YS(0.002)GPTSVSR;LGS(0.827)YS(0.173)GPTSVSR 166.6 5.3987e-05 2411970000.0 2152000.0 1605380.0 1396870.0 1323400.0 1314550.0 1725500.0 1601480.0 1509080.0 2379280.0 1659160.0 True False 2140413.8711096784 1658814.1028272966 1593537.1541883028 1490942.304308742 1481950.1505517135 1606220.2463900964 1524010.2941522927 1621695.212552972 1792938.3247185862 1553270.9883216578 1.378004152013707 1.0679489382723104 1.0259234648489466 0.9598726271967114 0.95408345465397 1.0340888733946234 0.9811618871469544 1.0440516978336458 1.1542984696159773 1.0 20.56687811791761 4.756923303504758 2.8640353744408285 1.0167668708384348 1.4512841219907169 0.7989902605772817 0.053656557744193666 0.1919917818427522 2.136925286419298 0.013559806602338222 0.19800387779934478 57137.77223375548 -4.756923303504758 0.4345172511522821 LGSGPDGAEEIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGSGPDGAEEIKR 13 1 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 0 106.58 0.0021854 461820000.0 264580.0 247380.0 216240.0 231290.0 238550.0 321740.0 328430.0 291350.0 412380.0 335300.0 False True 263155.53067760164 255613.89375563213 246684.71240822578 260571.29028530233 268927.9285033747 299498.8710944939 312542.5861755611 313092.01644532307 310754.47460889485 313900.86693522753 0.8383396109954133 0.8143140739027562 0.7858682099757578 0.8301069469141364 0.8567288492352815 0.9541192861894662 0.9956728989858232 0.9974232295125475 0.989976477742631 1.0 18.25994948781503 2.747972499996384 1.8149880938998515 0.9972969733338096 0.8134975167365485 0.9768933196658963 0.012736631978131402 0.04745566289977798 0.3102349975671481 0.0050115281935836755 0.004944337216819083 559.7221581511228 -2.747972499996384 -0.18379945659726116 LGSQHS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 5 LGSQHSPGR 9 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 1 LGS(0.285)QHS(0.715)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR 155.48 4.7157e-05 8354190000.0 3255120.0 4445270.0 4588240.0 4460310.0 4391640.0 4694550.0 4621400.0 4133830.0 4908520.0 4600800.0 True False 3237594.795597828 4593228.124727541 5234224.310302986 5024984.788674118 4950889.322710377 4370026.808282025 4397845.226537585 4442317.385763413 3698881.0167982285 4307173.005056953 0.7516751223590606 1.0664136591065037 1.2152342857269962 1.1666549689957655 1.1494521619859828 1.0145928206624801 1.0210514463603333 1.031376585186569 0.8587723345348462 1.0 22.038309842410555 1.6562864416323384 1.553963153286876 0.938729653451631 1.074992950800517 0.11566971150710159 0.12494173817449497 0.7502557106972559 3.574413742631355 0.10432333182317909 0.0384155283203951 45.31963898553424 -1.6562864416323384 0.13626329734888598 LGSSGLGS(ph)ASSIQAAVR ddPTM_BT-474_Trastuzumab_2h_R1 3 LGSSGLGSASSIQAAVR 17 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 LGSSGLGS(0.986)AS(0.001)S(0.014)IQAAVR;LGSSGLGS(0.99)AS(0.001)S(0.01)IQAAVR;LGSSGLGS(0.98)AS(0.008)S(0.012)IQAAVR 305.63 7.279300000000001e-47 753805000.0 529607.0 599575.0 568600.0 567407.0 510184.0 588480.0 541580.0 506437.0 671550.0 541590.0 True False 526755.6547568695 619531.4914242588 648653.9376402014 639240.6680224501 575152.9083025177 547799.7627329142 515381.7063634882 544229.900574979 506055.5008089698 507025.2625214726 1.0389140220297433 1.2218947204785906 1.2793325808154004 1.2607668991550063 1.1343673596109225 1.0804190702622334 1.0164813165333388 1.0733782728467713 0.9980873503073987 1.0 18.95169810570186 2.796794615268451 2.2787492101846425 1.0344058758259802 1.2063489524189324 0.593801316253004 0.06535632086497914 0.22037792800367453 2.2525443630052524 0.02328345888941567 0.02400876500848117 626.3175991218076 -2.796794615268451 0.17194307659295216 LGSSLDWDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGSSLDWDR 9 0 P26640;A0A140T936;P26640-2 P26640 VARS Valine--tRNA ligase 0 ;;; 110.55 0.0052771 896640000.0 1088980.0 1369910.0 1373780.0 1216950.0 889300.0 1081720.0 1229500.0 979030.0 1617880.0 1195840.0 False True 1083117.0526770523 1415506.626221916 1567196.2828901797 1371015.7452233057 1002547.0837059346 1006943.2424949842 1170024.387853888 1052090.190013608 1219175.1524813012 1119520.4673898672 0.967483028874239 1.2643865542915287 1.3998817605756302 1.2246455381202572 0.8955147430607919 0.8994415661221864 1.045112101060349 0.9397686068808807 1.0890155097599745 1.0 20.09444947351463 3.2506040045747358 24.633346587668992 0.9737767711671462 1.2309614608973087 0.5026476103819726 0.11444460445408744 145.93146575435006 298483.5993163373 0.03210054921263128 0.04312463680897981 1780.7543117388848 -3.2506040045747358 0.2571846897301625 LGSTVFVANLDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGSTVFVANLDYK 13 0 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 107.85 0.002938 178270000.0 228130.0 243540.0 212610.0 209890.0 195470.0 261100.0 221750.0 226140.0 342380.0 259140.0 False True 226901.77342762565 251646.08167696084 242543.63996075167 236462.0524794932 220361.94585853955 243050.77156328835 211023.10533273694 243015.7151156525 258005.0366569508 242601.4633390841 0.9352860873328082 1.037281796298298 0.9997616528048242 0.9746934302246568 0.9083290052151897 1.001852042514584 0.8698344289778249 1.0017075403044433 1.0634933240132074 1.0 17.888228727062064 1.4866013253068917 11.07455200486972 1.032051766051892 0.9635199392157964 0.2653447235002575 0.04794226339256617 0.11158534062928459 53.64387775009441 0.025583265421051396 0.011851097704087482 30.662059729283964 -1.4866013253068917 -0.0685318268360956 LGSVDS(ph)FER ddPTM_BT-474_Trastuzumab_2h_R1 2 LGSVDSFER 9 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 LGS(0.002)VDS(0.998)FER;LGS(0.004)VDS(0.996)FER 72.289 0.049481 755820000.0 916560.0 1047450.0 883890.0 943300.0 825260.0 837700.0 949600.0 816100.0 899560.0 920550.0 True False 911625.3427993894 1082313.7400531047 1008334.0290903935 1062721.6832812717 930351.9693007547 779791.7707336916 903664.220175725 877001.5260718303 677875.491486438 861799.7108774937 1.0578157909465562 1.2558761930322315 1.1700329164228855 1.2331423065797935 1.079545464634074 0.9048410679317811 1.048578003415207 1.0176396151013534 0.7865812472786953 1.0 19.716993088879914 2.9917654138403775 4.43130830022889 0.9669987220571704 1.18289465494196 0.6179257870869229 0.08407035231024107 0.1365755112343696 6.714801154855891 0.02506383192961693 0.028493776962146295 981.2177905532811 -2.9917654138403775 0.2158959328847897 LGSVS(ph)LDLCDGDTGEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGSVSLDLCDGDTGEPR 17 0 Q8N6R0-3;Q8N6R0-4;Q8N6R0;Q8N6R0-2 Q8N6R0-3 METTL13 Methyltransferase-like protein 13 1 LGS(0.226)VS(0.774)LDLCDGDTGEPR 265.43 1.5735e-27 57774000.0 77885.0 81986.0 82217.0 86783.0 76749.0 84452.0 76942.0 77863.0 90804.0 84822.0 True False 77465.67581383698 84714.8544484165 93792.43895702524 97769.71890193851 86522.53022303707 78614.03201862438 73220.02151301657 83673.5324403027 68426.57091126168 79408.58734023225 0.9755327277379874 1.0668223335273443 1.1811372308534374 1.2312235008417487 1.0895865689226354 0.9899940881934653 0.9220667935987794 1.0537088650349233 0.8617024078023543 1.0 16.277007410132637 2.757461329004125 3.945334681535115 0.9707749077791069 1.1194016418802122 0.45360973144951044 0.07882869831943062 0.21887058584704153 7.843223781848152 0.026581005351365223 0.027010149582626104 572.0860119815842 -2.757461329004125 0.14862673410110527 LGTGFSDEELEEHHQSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 LGTGFSDEELEEHHQSLK 18 0 P18858;P18858-3;F5GZ28 P18858 LIG1 DNA ligase 1;DNA ligase 0 ;; 245.97 1.7306e-24 719610000.0 342402.0 518822.0 550433.0 553158.0 602900.0 762090.0 704630.0 457912.0 679680.0 708390.0 False True 340558.54567643814 536090.676635478 627929.1819505962 623187.7460834332 679675.7413317303 709408.5120668955 670544.3549520011 492083.718670021 512181.9712453892 663179.9437168093 0.5135235902457618 0.8083638260091882 0.9468458566936611 0.9396963101609515 1.0248737884358654 1.0697074282599637 1.011104695346964 0.7420063337743976 0.7723122149545899 1.0 19.339040851086775 4.700402136496374 2.298448631988044 0.9309399041316941 0.4303301945025015 0.6209730952921877 0.10052151344824888 0.407046545315178 2.711800034025261 0.02908945338473202 0.3967487549323603 50165.15246241206 -4.700402136496374 -0.5006097096291926 LGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLK 38 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 193.4 2.7231e-24 202030000.0 40492.0 82073.0 92924.0 96992.0 101370.0 125090.0 119700.0 22972.0 105080.0 79269.0 False True 40273.99557108414 84804.75019082376 106006.89149011286 109271.17725518614 114278.86863293686 116442.82273018664 113909.65370159449 24686.28728945241 79184.44199986102 74209.98455439466 0.5427031930125789 1.1427673877045927 1.4284720866962533 1.47245923727544 1.5399392591056584 1.5690991371226608 1.5349639861210407 0.3326545267147682 1.0670321854307916 1.0 16.179325686315096 1.7520359483307821 24.999999999068493 0.746546397392164 1.3401529265510226 0.32130505078844285 0.3418671114653929 4.381821760433052 8141.245881013732 0.16153431595047263 0.08957948346819078 56.49837388920263 -1.7520359483307821 0.5936065291588586 LGTPDEQLEMANCQAVILSVEDDTGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGTPDEQLEMANCQAVILSVEDDTGHR 27 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 124.91 7.6901e-05 27459000.0 32003.0 27097.0 28305.0 25403.0 31755.0 31629.0 34229.0 29712.0 36682.0 33842.0 False True 31830.699403867555 27998.907264517595 32290.097968529586 28619.017195371736 35798.81102336892 29442.56167665742 32573.212502521958 31929.26031447894 27642.212613617216 31682.17458640613 1.0046879615872437 0.8837432288038424 1.0191881835782919 0.9033160623908466 1.1299354129160413 0.9293100003713236 1.0281242663342354 1.0077988879014266 0.8724847007653843 1.0 14.951383741398619 LGTQEYLQQLESHMK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGTQEYLQQLESHMK 15 0 Q6P2E9;Q6P2E9-2;I3L2F4 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 134.85 3.2588e-05 239540000.0 255050.0 256670.0 247690.0 214390.0 199440.0 259270.0 271080.0 230700.0 365750.0 277080.0 False True 253676.83913871896 265213.10578970856 282562.5990399254 241531.752018098 224837.5018265059 241347.2751559319 257966.82477383644 247916.005470863 275615.8132989066 259396.51717987758 0.9779500584535901 1.0224235416615 1.0893076056375242 0.9311295103110758 0.8667714750795715 0.9304183332136664 0.9944883901234121 0.9557414577734925 1.0625270388953674 1.0 17.984799583629158 3.720689162828047 24.77605565764308 0.9577501783899545 1.0291467246631822 0.23385782488819462 0.0548957368393619 989.7535865249121 1372142.5685193278 0.015206571301043616 0.023611390074750965 5256.409152571883 -3.720689162828047 0.07139654627322778 LGTQGWT(ph)KQRKPCPQNAS(ph)SYSAEMTEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGTQGWTKQRKPCPQNASSYSAEMTEPK 28 3 P45844-3 P45844-3 2 LGT(0.001)QGWT(0.555)KQRKPCPQNAS(0.522)S(0.523)Y(0.155)S(0.134)AEMT(0.108)EPK;LGTQGWT(0.816)KQRKPCPQNAS(0.815)S(0.285)Y(0.027)S(0.028)AEMT(0.028)EPK 55.06100000000001 0.036245 1969610000.0 1289840.0 792590.0 590700.0 518750.0 476190.0 780650.0 721810.0 647620.0 1326860.0 693350.0 True False 1282895.6447546966 818970.8790192264 673865.4255435592 584423.6968113639 536829.9739007414 726685.5029524362 686893.2927180277 695948.6929477266 999873.1320130907 649099.8093932002 1.9764227722605396 1.26170254122371 1.0381537874329538 0.9003602964507144 0.8270376390998908 1.1195281410292905 1.0582244560511551 1.0721751614721968 1.5403996697330797 1.0 19.308080806968338 4.730443509929396 2.5727475130368647 1.0602642001415763 2.160173099549714 0.6976666459869527 0.1787017998484624 0.26422312635188133 2.2771742585645933 0.04492403462195691 0.6258432058096188 53758.05037609732 -4.730443509929396 1.0999088994081379 LGVADIIDCVVLTS(ph)SPEATETSQQLQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGVADIIDCVVLTSSPEATETSQQLQLR 28 0 Q8NCF5;H3BSZ7;Q8NCF5-3;Q8NCF5-2 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 LGVADIIDCVVLT(0.002)S(0.551)S(0.448)PEATETSQQLQLR;LGVADIIDCVVLT(0.088)S(0.58)S(0.332)PEATETSQQLQLR 171.79 1.9155e-12 306470000.0 154255.0 172730.0 134992.0 150881.0 130890.0 173231.0 151159.0 148241.0 172033.0 154387.0 True False 153424.5082193417 178479.21363250993 153997.70022850178 169982.5191298225 147558.06565418857 161255.9487119113 143846.8616865439 159303.4961725456 129637.77227409653 144533.88948263947 1.06151234681725 1.2348606563580216 1.0654781434287703 1.1760737896024016 1.0209236476121564 1.1156964590735683 0.9952465971921549 1.1021878449599196 0.8969368550042918 1.0 17.141048281737945 2.2730586597102893 0.5745636268729255 0.9775209404800729 1.1422977360423558 0.3790212013275891 0.07239439591609972 0.8643269144744793 0.5784062244194919 0.06044235441908898 0.0477273404971632 187.52477787568841 -2.2730586597102893 0.16477679556228297 LGVADIIDCVVLTSS(ph)PEATETSQQLQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGVADIIDCVVLTSSPEATETSQQLQLR 28 0 Q8NCF5;H3BSZ7;Q8NCF5-3;Q8NCF5-2 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 LGVADIIDCVVLT(0.001)S(0.025)S(0.974)PEATETSQQLQLR 146.5 5.6178e-08 22355000.0 25236.0 27945.0 22970.0 26861.0 22202.0 26732.0 25784.0 23532.0 34592.0 27081.0 True False 25100.132179983182 28875.132431890772 26203.976341180874 30261.599845879635 25029.293098436057 24884.079760359346 24536.729415554826 25288.077333074794 26067.26510905204 25352.667394789445 0.990039106699354 1.138938636406569 1.033578673720399 1.1936258767035728 0.9872449596203101 0.9815172255000512 0.967816483901717 0.9974523366433654 1.0281862931081351 1.0 14.629849923022173 LGVDLDAQTWR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGVDLDAQTWR 11 0 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 132.25 0.00043372 84338000.0 116100.0 146510.0 142410.0 153740.0 125990.0 137420.0 143150.0 121210.0 146850.0 146540.0 False True 115474.9304999225 151386.49678283476 162460.09015009005 173203.46823668282 142034.07969876414 127920.47885188475 136225.28761389526 130255.30569190864 110660.78518918507 137187.69174079405 0.841729524235336 1.1034991176093865 1.184217680818235 1.2625292111768882 1.0353266965605556 0.9324486564988715 0.9929847633217914 0.9494678716368838 0.806637853476465 1.0 17.065791525473323 2.9295856089613928 4.639329391118709 0.9409995803679825 1.1092731822338835 0.3141550859371378 0.11210374859452618 0.2667454112615737 10.932820088849747 0.035660952508385024 0.038673030085026615 850.3262946183376 -2.9295856089613928 0.168273601865901 LGVEPSDDDCVSVQHVCTIVSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LGVEPSDDDCVSVQHVCTIVSFR 23 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;;; 354.52 9.022699999999996e-102 1662620000.0 564482.0 781000.0 680977.0 655574.0 645580.0 786460.0 685790.0 607614.0 722540.0 691070.0 False True 561442.8916318455 806995.1128755304 776852.6424418087 738569.601182484 727790.7863475523 732093.8713277051 652615.7177277907 652957.2420813751 544479.6985399646 646965.3209452062 0.8678098708777562 1.2473545130618797 1.2007639625982411 1.1415907116991144 1.1249301357981003 1.131581319162714 1.00873369344485 1.0092615800912093 0.8415902381668438 1.0 19.303328856451728 1.9250262330910057 1.5600850431135855 0.9325800276903564 1.1316255305011325 0.35562854590401194 0.10288885707113608 0.3929721853456865 1.7828482201043914 0.06814101789059761 0.030978869802048163 84.1445966748634 -1.9250262330910057 0.19904550281077604 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK 35 0 P00338;P00338-3;P00338-4;P00338-2;P00338-5 P00338 LDHA L-lactate dehydrogenase A chain 0 ;; 246.76 3.1784e-48 7634630000.0 631111.0 1013494.0 1271700.0 1121061.0 1011583.0 1722100.0 1587920.0 559784.0 1503140.0 1365900.0 False True 627713.1684990234 1047227.53511994 1450744.3061854462 1262987.2076550266 1140402.0989278096 1603055.2803873587 1511106.2431565253 601557.9246055556 1132711.28804407 1278727.0925941751 0.49088908191158376 0.8189609348116742 1.1345222249434763 0.9876909740707716 0.8918260241239252 1.2536336249318167 1.1817269313430425 0.4704349568328649 0.8858115970203772 1.0 20.2862769647616 -1.3433124135128267 3.3090681025264677 1.000627947851809 0.899494462548784 0.013629413945346003 0.2501736357306145 94750916.22188668 123959972.36003298 610662.8688981174 0.0635136710597211 0.045361518722411565 1.3433124135128267 -0.10113348530302502 LGVIEDHSNR ddPTM_BT-474_Trastuzumab_2h_R1 10 LGVIEDHSNR 10 0 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 ;;;;;;;;; 236.32 3.8573e-12 36703226000.0 9839165.8 13569301.8 11964319.3 12157455.9 11902816.7 12216155.7 12899033.1 10963286.9 14288833.0 11906440.6 False True 9786192.824566893 14020947.807596838 13648791.4617124 13696588.570407968 13418569.853223098 11371681.610196335 12275057.589861369 11781423.038920857 10767541.5677027 11146561.367291348 0.8779562146657764 1.257872032960778 1.2244844855709167 1.228772544203584 1.2038304380217892 1.0201963848299964 1.1012416462247718 1.0569558315529 0.9659967063294649 1.0 23.41009538211694 2.735358244043354 24.772900574882915 1.0404124269043062 1.1716597911072562 0.26517566558199956 0.10598822651710595 339.2215552832794 2624136.551804582 0.033106224078719444 0.03243255334281808 543.6986367178472 -2.735358244043354 0.1312473642029499 LGVLHPDVITK ddPTM_BT-474_Trastuzumab_2h_R1 1 LGVLHPDVITK 11 0 Q9NSD9;Q9NSD9-2 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit 0 63.408 0.074826 416010000.0 487790.0 668240.0 573670.0 598410.0 610640.0 573280.0 619090.0 548890.0 666740.0 622810.0 False True 485163.7928385636 690481.9644403891 654437.7495709715 674168.6446436405 688401.384453157 533650.5029559635 589142.2515465342 589850.959006945 502430.8608582725 583061.7325855326 0.8320967844813795 1.1842347488292733 1.1224158832529252 1.1562560308221617 1.180666378842092 0.915255577809129 1.0104286023609166 1.0116440953710102 0.8617112610534222 1.0 19.153289113574573 2.732887803343938 24.91077263020808 0.9689928743825763 1.1049953416702383 0.2929564060556491 0.10406934513975302 575.8317598904257 2528618.261066479 0.032499468023923984 0.03143209174809574 540.6146412478704 -2.732887803343938 0.13600246728766197 LGVQVVITDPEKLDQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGVQVVITDPEKLDQIR 17 1 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 ; 128.99 3.2009e-05 1307170000.0 1672770.0 1750980.0 1553430.0 1581040.0 1490570.0 1823040.0 1741720.0 1737630.0 2428700.0 1966430.0 False True 1663763.9921822168 1809260.3108102365 1772139.4413443906 1781199.5018923183 1680385.2541994313 1697017.5357745604 1657466.349583468 1867300.7741063526 1830179.4279126604 1840930.7538545774 0.903762397742878 0.9827965049863887 0.9626323193492475 0.9675537758075948 0.912791125185457 0.9218258384902915 0.9003414963398444 1.0143242868839912 0.9941598422866228 1.0 20.812003930422936 1.680897246607863 8.318301297961819 1.0027375817703266 0.938673330684335 0.5617183691853848 0.02693319961954387 0.09604453647739188 11.634996282060145 0.01385655157572416 0.00730886552875554 47.96199578828047 -1.680897246607863 -0.06406425108599156 LGVS(ph)VS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 LGVS(1)VS(1)PSR;LGVS(1)VS(0.997)PS(0.003)R 132.56 0.00044075 277520000.0 900390.0 681430.0 564020.0 770360.0 622630.0 697170.0 645060.0 786510.0 1047300.0 876380.0 True False 895542.4002827331 704110.9856168657 643429.113450276 867887.4970132089 701918.2398828589 648976.2788616545 613855.9834315004 845203.3700168557 789206.9481010122 820448.6780933331 1.0915276289601838 0.8582023524654482 0.7842405389031297 1.0578205806000205 0.8555297346740434 0.7910016752904412 0.7481954689208103 1.0301721394457612 0.961921164813228 1.0 19.646053565426286 1.6207112293232855 24.99664130559217 0.9970259475439942 0.8815856307259358 0.19155227551750964 0.10685334544706758 1.3321152838691002 2586.13849207678 0.05030498442050281 0.027669052577331873 41.75526356184322 -1.6207112293232855 -0.11544031681805844 LGVSVS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 10 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 LGVS(0.002)VS(0.849)PS(0.148)R;LGVSVS(0.98)PS(0.02)R;LGVSVS(1)PSR;LGVSVS(0.988)PS(0.012)R;LGVSVS(0.998)PS(0.002)R;LGVSVS(0.983)PS(0.017)R;LGVS(0.001)VS(0.982)PS(0.017)R;LGVS(0.001)VS(0.997)PS(0.001)R;LGVS(0.002)VS(0.818)PS(0.181)R;LGVSVS(0.977)PS(0.023)R 182.93 4.7998e-05 75186000000.0 14013660.0 17491930.0 16223660.0 16442200.0 16203750.0 15883090.0 16590060.0 14909460.0 17595510.0 15703690.0 True False 13938212.011623997 18074138.315955013 18507810.30941933 18523780.834143255 18267201.515349213 14785129.37307221 15787535.417616317 16022079.613903828 13259332.328254411 14701467.05959457 0.9480830692014202 1.2294105236360984 1.2589090758354378 1.2599953976738765 1.2425427640180677 1.005690745905732 1.0738748285201203 1.0898286238343398 0.9019053863472093 1.0 23.8094567930143 2.7344445326677427 24.86726847792338 1.030515692609249 1.1980631954131344 0.43218572823011314 0.09822174464608494 334.70737825902637 2022120.5935934067 0.03167740394863871 0.030829766185424552 542.5559526056546 -2.7344445326677427 0.16754750280388553 LGWDPKPGEGHLDALLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LGWDPKPGEGHLDALLR 17 1 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 117.26 0.00013589 1229900000.0 1492400.0 1517200.0 1410700.0 1323500.0 1357300.0 1667200.0 1698700.0 1432900.0 2210900.0 1743900.0 False True 1484365.0842212285 1567699.084833232 1609314.2979757865 1491054.9642984867 1530144.1096526084 1551950.38816666 1616527.391335829 1539830.2741187667 1666053.319542183 1632602.8089720933 0.9092015988602904 0.9602452453332936 0.985735347955839 0.9132992765320997 0.9372421150102063 0.9505988717144171 0.9901535036275078 0.9431750733592469 1.0204890683675538 1.0 20.63874241397429 1.471344065369446 0.9789570029292946 1.0068764344586019 0.9444815094257477 0.42152964888400224 0.02685915154728926 0.5157754712170214 0.9849391694828997 0.024266734905071242 0.008953308974931885 29.603568502633514 -1.471344065369446 -0.062394925032854154 LGYFSVDPDSHQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LGYFSVDPDSHQGK 14 0 P47897;A0A1B0GVU9;P47897-2;B4DDN1;A0A0U1RR79 P47897 QARS Glutamine--tRNA ligase 0 ; 134.13 4.0547e-05 462670000.0 998200.0 1106680.0 1048770.0 1124190.0 1046270.0 1255430.0 1275550.0 1188820.0 1511530.0 1350470.0 False True 992825.8021104466 1143515.1747978118 1196427.699927742 1266512.338734203 1179506.282771854 1168645.0790643396 1213846.7734258063 1277535.7851056417 1139033.6849643097 1264281.8484044634 0.785288346394756 0.9044780451771411 0.9463298879420328 1.001764235033948 0.9329456752546142 0.9243548663924754 0.9601077283184073 1.0104833718192703 0.9009333531140875 1.0 20.269886691041453 4.732801505469095 1.7822014564250543 0.9626057087261275 0.7270737584955742 0.7103869845981261 0.03392284018226645 0.46174805936384083 1.486908355237339 0.008852814188109874 0.1831280399684115 54050.722735788644 -4.732801505469095 -0.2355319502305533 LGYLVS(ph)PPQQIR ddPTM_BT-474_Trastuzumab_2h_R1 3 LGYLVSPPQQIR 12 0 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 LGYLVS(1)PPQQIR;LGYLVS(1)PPQQIR;LGYLVS(1)PPQQIR 116.9 0.00083027 399817000.0 384004.0 414999.0 357351.0 371537.0 362077.0 417497.0 421789.0 379602.0 550302.0 419654.0 True False 381936.5651308553 428811.9908428068 407662.91464942636 418573.5461054535 408185.35975148284 388636.41507222643 401385.4546795472 407929.8288198983 414687.4457690089 392871.32243613485 0.9721670769007145 1.0914820358579735 1.0376499667157457 1.0654214807788542 1.0389797789779818 0.9892206248660543 1.0216715544179136 1.0383293600825532 1.055529946033209 1.0 18.58369733683982 2.9857991767060494 24.738948909597372 1.0235392795441642 1.0458559356540418 0.07770265595723469 0.03307482844808445 1440.1139606888876 2508798.5771401185 0.009542400335913805 0.01049850857969827 967.830215766444 -2.9857991767060494 0.022316656109877542 LHAVDEELAS(ph)SPVCMDSFQPMDDSLIAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHAVDEELASSPVCMDSFQPMDDSLIAFR 29 0 A4PB68;Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2 A4PB68;Q3T8J9-3 GON4L GON-4-like protein 1 LHAVDEELAS(0.498)S(0.498)PVCMDS(0.004)FQPMDDSLIAFR 68.207 0.0057177 15531000.0 11271.0 20753.0 13564.0 17669.0 15792.0 17776.0 17146.0 11638.0 17881.0 17111.0 True False 11210.31818832582 21443.751059546586 15473.693299598483 19905.893588356616 17803.01759348266 16547.186960203046 16316.582475919293 12506.486656566558 13474.467143124419 16018.961330535882 0.6998155471513834 1.3386480319838083 0.9659610870089317 1.2426457107684836 1.1113715319073747 1.0329750237089494 1.0185793035667097 0.7807301858408431 0.8411573550301877 1.0 13.967492985981167 1.9263472022210353 4.169675897248268 0.8549308800313464 1.0803813698551414 0.20025753547019232 0.16775225769009744 0.2896467491692728 9.11787257548046 0.07297713811296622 0.0424440370611715 84.40092419881985 -1.9263472022210353 0.225450489823795 LHAVDEELASS(ph)PVCMDSFQPMDDSLIAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHAVDEELASSPVCMDSFQPMDDSLIAFR 29 0 A4PB68;Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2 A4PB68;Q3T8J9-3 GON4L GON-4-like protein 1 LHAVDEELAS(0.161)S(0.839)PVCMDSFQPMDDSLIAFR 86.73200000000001 0.001231 61503000.0 25507.0 20532.0 22703.0 22321.0 24338.0 31372.0 24480.0 18001.0 35524.0 29343.0 True False 25369.673146094123 21215.395208143902 25899.38506198646 25146.836311376293 27437.30003737215 29203.327481744484 23295.80887731859 19344.326027225874 26769.586197212222 27470.304618193793 0.9235308271496776 0.7723028740676134 0.9428139011182679 0.9154189100153389 0.9987985360453636 1.0630871367332015 0.8480360593413149 0.7041904447762832 0.9744917855582322 1.0 14.745585288096487 1.0211520907747753 24.985050128475915 1.000000628830904 0.8883523365289778 0.11989176568800652 0.09832358991098183 406.60360921897797 480282.413313337 0.10565983206838397 0.026414957999164844 10.499100448244555 -1.0211520907747753 -0.11164829230192619 LHAVNAEECNVLQGR ddPTM_BT-474_Trastuzumab_2h_R1 5 LHAVNAEECNVLQGR 15 0 A0A0C4DGA2;O75521-2;O75521 A0A0C4DGA2 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial 0 ;;;; 284.79 5.1520000000000005e-34 5192420000.0 1995285.0 2535728.0 2226837.0 2376721.0 2365935.0 2683365.0 2325464.0 1720770.0 2658250.0 2100783.0 False True 1984542.6072570053 2620128.1736000525 2540356.2935858145 2677613.634909303 2667222.798254582 2497870.29351177 2212972.422184834 1849182.595293007 2003159.9062250701 1966709.2303691877 1.0090676225099477 1.3322397297683939 1.2916786347257558 1.361468992753273 1.3561856308336413 1.270076051375868 1.1252158621177661 0.9402419873454712 1.0185338408408446 1.0 20.907352246354478 2.0426595666204816 2.9132542577327256 0.9838522334050565 1.2825921870302501 0.6344263765067846 0.09655144377526349 0.1589485100852355 2.6512607641910613 0.045572460546811695 0.027780532626868415 110.32134973781818 -2.0426595666204816 0.2987399536251937 LHAVVETLVNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHAVVETLVNHR 12 0 Q13596-2;Q13596;H0YK42;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 0 164.9 3.2411e-05 334560000.0 83123.0 98842.0 108220.0 92489.0 94363.0 98059.0 82198.0 54527.0 107260.0 94143.0 False True 82675.47500383356 102131.89621874926 123456.43533489741 104198.09791688925 106379.56871667967 91280.41213605716 78221.76871314677 58596.08162249569 80827.21021036443 88134.7131401227 0.9380580256997075 1.158815778481889 1.4007696960290525 1.1822594549235994 1.207011005386153 1.035691941164354 0.8875250843420158 0.6648467957152769 0.9170871195990586 1.0 16.427422737075972 2.375387654031614 2.45560257485338 0.8158334701457818 1.187819623290319 0.5346048868648693 0.1335965516533856 0.19529866821411027 2.4119047266086997 0.055101477665150445 0.043052835141122826 237.34913539675279 -2.375387654031614 0.3719861531445373 LHCESESFK ddPTM_BT-474_Trastuzumab_2h_R1 4 LHCESESFK 9 0 C9JLU1;P52434;P52434-2;P52434-4 C9JLU1 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 0 ;;; 164.46 6.2246e-05 1160950000.0 1614580.0 1785690.0 1766110.0 1479380.0 1223940.0 1697170.0 1896440.0 1147270.0 2752740.0 1696550.0 False True 1605887.2806767004 1845125.6121776018 2014762.9366966914 1666669.3563157509 1379801.5041392595 1579848.6326084514 1804701.9520956704 1232885.1131190162 2074364.1118262014 1588274.7265104693 1.0110891106382627 1.1617169129370009 1.2685229469861559 1.049358356269711 0.8687423410500037 0.9946948133333768 1.1362656107112552 0.776241724772474 1.3060486811269096 1.0 20.59902904874076 3.4870203377503657 24.660797314112383 0.9918240709642641 1.1502987770163227 0.1324484362327646 0.14655615669450234 630.1231340744182 1569773.876217173 0.038422490374145406 0.05524258974819878 3069.1657122171923 -3.4870203377503657 0.1584747060520586 LHDAFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHDAFFK 7 0 Q13435;E9PPJ0 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ; 114.78 0.005827399999999999 2069120000.0 5282500.0 5896100.0 5174600.0 5098300.0 4963800.0 5642800.0 5748400.0 3671300.0 7304200.0 5538500.0 False True 5254059.606940922 6092348.124232285 5903138.701570508 5743744.257259518 5595910.507252361 5252726.517722415 5470327.9309795005 3945271.0484836577 5504177.781265549 5185028.188251584 1.0133136052848761 1.1749884288067205 1.138496935261807 1.1077556473605856 1.0792439894409385 1.0130565017224447 1.0550237592486689 0.7608967406238966 1.061552142327231 1.0 22.30592040155269 2.3512978581210904 1.6368873826115888 0.9219599130732737 1.1100896450349307 0.3305708367196655 0.08799957098292559 0.3344803292375343 1.8130796816860704 0.04326146337617481 0.029708761803682704 224.5421403856172 -2.3512978581210904 0.18812973196165694 LHDEKEETAGSYDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHDEKEETAGSYDSR 15 1 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610;A0A2R8YEF8 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ; 218.63 1.1487e-12 1942600000.0 1326250.0 1318820.0 1106760.0 1200980.0 1156310.0 1413020.0 1355940.0 875960.0 1644000.0 1309330.0 False True 1319109.6173602259 1362716.1264564742 1262582.1878696287 1353023.9448607448 1303559.224513673 1315341.2532912986 1290348.0020061813 941328.5832347531 1238858.2284713672 1225767.4384261896 1.0761499906163945 1.1117248539462905 1.030034040952097 1.1038178225699524 1.063463740060972 1.0730757010319318 1.0526858207809053 0.7679503906902286 1.0106796686180417 1.0 20.22525385564859 1.917410417627771 9.974951960790987 0.9023996819480007 1.0754012539991291 0.502026300274873 0.06607757420727715 0.328969875568701 38.20405469314347 0.02587212370464587 0.01644361201514193 82.68189421782145 -1.917410417627771 0.17300157205112843 LHDETLTYLNQGQSYEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHDETLTYLNQGQSYEIR 18 0 F8VX55;Q12800-2;Q12800-3;Q12800-4;Q12800;C9JWL3;Q9NZI7-4;Q9NZI7 F8VX55 TFCP2;UBP1 Alpha-globin transcription factor CP2;Upstream-binding protein 1 0 193.9 1.7085e-18 0.0 71178.0 87590.0 89354.0 89400.0 88636.0 91823.0 99125.0 65438.0 98772.0 82199.0 False True 70794.78555661927 90505.38020072698 101934.26652110895 100718.03083361156 99923.26921326797 85475.49213809209 94329.94505572724 70321.31584743105 74430.96407699143 76952.98944589552 0.9199744683914328 1.176112596176136 1.3246303653060467 1.308825447313192 1.2984975623789443 1.1107494686504493 1.2258126128036804 0.9138217547334259 0.9672264146323087 1.0 16.23168975256161 1.745357700189423 8.013083810367068 0.9581957021224526 1.2044152113832316 0.4702195630834416 0.11366546888955777 0.10515703332423386 23.679708261778092 0.05711580407616193 0.030583381601728202 55.63623081497339 -1.745357700189423 0.24621950926077896 LHDFGYR ddPTM_BT-474_Trastuzumab_2h_R1 6 LHDFGYR 7 0 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ;;;;; 174.21 0.00083478 3395200000.0 1367730.0 1788400.0 1507560.0 1606850.0 1394070.0 1649670.0 1491110.0 895651.0 2031860.0 1458250.0 False True 1360366.2936490893 1847925.812889368 1719811.3440535744 1810277.0452459587 1571596.5511997459 1535632.1958054786 1418979.31270664 962489.0256436232 1531135.3285290948 1365183.2365293643 0.9964715777696473 1.3536100967568687 1.259765940596929 1.326032284023743 1.1511982488117387 1.1248542720971568 1.0394057550208708 0.7050255232334306 1.1215603060154928 1.0 20.380663173722375 2.303471685979434 2.062467538700291 0.906608761949739 1.2312794442344313 0.4213088817024535 0.1370189472534315 0.25121217320160716 2.1836534194359714 0.06113764409651128 0.04304218983792564 201.12760678948234 -2.303471685979434 0.3246706822846922 LHDFLAHSSEESEETSS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHDFLAHSSEESEETSSPPR 20 0 P46100;P46100-4;A0A096LNL9;P46100-6;A0A096LNW1;A0A087WWG0 P46100 ATRX Transcriptional regulator ATRX 1 LHDFLAHSSEESEET(0.002)S(0.077)S(0.921)PPR;LHDFLAHSSEESEETS(0.031)S(0.969)PPR 213.15 1.718e-22 396360000.0 334170.0 533010.0 532630.0 638520.0 607790.0 648640.0 583460.0 97697.0 526810.0 339770.0 True False 332370.865849777 550750.9156386513 607619.6742970468 719356.5665310697 685188.4538464296 603801.0435343211 555235.8107663518 104987.6462353139 396984.734392337 318085.58770826797 1.0449101710153896 1.7314551080628409 1.9102395637438465 2.2615188940620197 2.154100909705 1.8982345219868841 1.7455547570284322 0.3300609970785702 1.2480437647380342 1.0 18.279055480036803 1.8383003780773122 7.166061890520818 0.8145295865696678 1.8594812165839885 0.580983654743743 0.37339206715691986 0.16760726242804339 10.321291187217703 0.16569547728913261 0.10155549809007988 68.91287647624108 -1.8383003780773122 1.0449516300143207 LHDINAQLVEDQGFLDTLK ddPTM_BT-474_Trastuzumab_2h_R1 3 LHDINAQLVEDQGFLDTLK 19 0 Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 Q10567-4 AP1B1 AP-1 complex subunit beta-1 0 ;; 206.28 3.7172e-16 514797000.0 634296.0 603963.0 581695.0 497785.0 472887.0 577183.0 539190.0 336644.0 795200.0 599428.0 False True 630881.0208129105 624065.5433516565 663592.5998164219 560804.5299609544 533106.3564291566 537283.6977526369 513107.3197941744 361766.0847235949 599233.6151340825 561171.9918438697 1.1242204350576988 1.1120753573269657 1.1825119739779313 0.9993451884836451 0.9499874622707087 0.957431421313915 0.9143494815345882 0.6446616901440907 1.0678252369031318 1.0 19.098083480122526 3.2500436987455195 1.157126734103465 0.865436059953426 1.1434035579797546 0.40086077706094203 0.11044428537354664 0.4040073863897517 1.148324248843776 0.04430628354697037 0.07037458241381933 1778.4583496577595 -3.2500436987455195 0.2779674980263286 LHDINAQMVEDQGFLDSLR ddPTM_BT-474_Trastuzumab_2h_R1 7 LHDINAQMVEDQGFLDSLR 19 0 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1 P63010 AP2B1 AP-2 complex subunit beta 0 ;;;;;; 335.48 1.9572999999999997e-75 3072010000.0 1670499.0 1907204.0 1883098.0 1760829.0 1889998.0 2040169.0 1903566.0 1073354.0 2054135.0 1847013.0 False True 1661505.2189938866 1970684.132210836 2148221.830218764 1983749.7708581355 2130678.042404194 1899136.9190712478 1811483.2402517092 1153453.1258611747 1547920.9532488033 1729135.049032616 0.9608880578318243 1.1396935903377572 1.242367871393626 1.1472497604903484 1.232221880874039 1.0983161321805033 1.0476239211420553 0.6670694267093175 0.8951995705105885 1.0 20.72161912017883 1.9416900132603465 5.616323892781235 0.823010867286827 1.1415236464668956 0.5784978117433064 0.10680043595941453 0.13050415068038224 8.612493289429604 0.046346824332442735 0.02837387083109261 87.43594601536276 -1.9416900132603465 0.3185127791800686 LHDMLGPHMLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHDMLGPHMLR 11 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 119.27 0.00035168 209640000.0 38964.0 38897.0 34993.0 43537.0 30445.0 31296.0 44376.0 11986.0 41800.0 35903.0 False True 38754.22215330738 40191.66313126698 39919.71023539145 49048.779736050805 34321.99028834724 29132.581182859718 42229.363347217695 12880.456183674749 31498.950091303635 33611.63980189526 1.1530000434885699 1.195766209805708 1.187675176536329 1.459279583654383 1.0211340622069836 0.8667408479492577 1.2563910477475873 0.38321415615516796 0.9371441047493168 1.0 15.036673308281445 2.4932130308393563 1.2176404784719925 0.7686026904631569 1.2308029639428528 0.32575512424749475 0.22562513802126039 0.45095481831608414 1.3522155420275321 0.12328667499078645 0.09035076856295644 311.3243075710052 -2.4932130308393563 0.46220027347969594 LHDPEGMGIIPR ddPTM_BT-474_Trastuzumab_2h_R1 5 LHDPEGMGIIPR 12 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;;;; 190.53 6.5247e-06 1565580000.0 1964490.0 2440810.0 2173010.0 2402780.0 2351950.0 2257760.0 2231200.0 1608220.0 2522120.0 2129190.0 False True 1953913.4041153563 2522050.8853491987 2478950.9198584883 2706971.701637415 2651456.891400175 2101686.365395366 2123268.331988283 1728233.542775691 1900577.320676525 1993303.27130873 0.9802388990374196 1.2652620008461193 1.2436396184866039 1.3580330402308107 1.3301823809576783 1.054373609699379 1.0652008465296015 0.867019869806864 0.9534812630035345 1.0 20.92672979516978 2.366018107102695 2.0795587812438123 0.9403459217085517 1.2416802958439621 0.5725841779471265 0.1073284805008182 0.21631287013448217 1.9157713817865214 0.04721940731202068 0.03526846701600823 232.28336405774135 -2.366018107102695 0.3013343741354104 LHDTFGFVDEDVFFQLSAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHDTFGFVDEDVFFQLSAVK 20 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H2E6;F5H3E1 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ; 105.77 0.00025109 52426000.0 65193.0 75602.0 70027.0 71061.0 61295.0 74350.0 78429.0 40571.6 99389.0 66478.0 False True 64842.00813162322 78118.36686762585 79886.19291440456 80057.31531395155 69100.55492607137 69210.35950107433 74635.08964212496 43599.25881041037 74895.91269436796 62235.31712532082 1.0418844335773754 1.2552095896020254 1.2836151015916069 1.2863647043485498 1.1103109635791892 1.112075308650041 1.1992401274638838 0.7005549392897967 1.2034310445233691 1.0 15.925445888873469 1.7883932674045255 24.999999999992802 0.9362526647847059 1.188987658380434 0.3358009208840729 0.13699395814020565 110.15899656118155 55280.76030788253 0.06052375930497304 0.0341163032256827 61.431803780874034 -1.7883932674045255 0.25273499359572804 LHDVEHVLIDVGTGYYVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LHDVEHVLIDVGTGYYVEK 19 0 Q99471;H3BPF6;Q99471-3 Q99471 PFDN5 Prefoldin subunit 5 0 ;; 93.765 0.00098549 470446000.0 322519.0 300206.0 243000.0 283760.0 280915.0 321059.0 278212.0 42511.5 347446.0 172536.0 False True 320782.59353922965 310198.175231641 277212.28780613624 319683.98690543184 316687.86013634666 298864.9470215925 264753.8226869509 45683.92399902296 261822.58883787275 161524.60476449865 1.9859673639624604 1.9204391534274732 1.7162232850549868 1.9791658823219413 1.9606168397568566 1.8502750553535467 1.6390928371127078 0.2828295049266933 1.6209455470862015 1.0 17.301394419343477 1.940063969627614 7.704502329728285 0.9015046213545409 1.8883805257033814 0.642184864787707 0.3107247049746968 0.16227181851226422 18.787971718898756 0.12427210363217261 0.07802785977398952 87.10918884317437 -1.940063969627614 0.9868759043488405 LHEDLCEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHEDLCEK 8 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 175.91 0.0002634 423170000.0 1093000.0 982200.0 866380.0 803110.0 801770.0 1086200.0 1033100.0 673750.0 1491800.0 977980.0 False True 1087115.4094437154 1014891.9332475617 988358.7732900424 904783.6436552755 903870.6570368909 1011113.5506397705 983125.0061747466 724028.6462331774 1124165.8790958552 915564.479109197 1.1873717627200102 1.1084876667943757 1.0795075560944336 0.9882249304118801 0.9872277460090154 1.104360832809436 1.0737911186018083 0.7908002797767172 1.2278391142802065 1.0 19.8043019665931 4.421723062335595 1.1885485404798322 1.006544120479312 1.2169052027441671 0.17539527121645238 0.10571391096730468 1.4281196230543718 2.5196985568344497 0.031843920401094586 0.32565161541327947 26407.243029461282 -4.421723062335595 0.21036108226485517 LHEEGIIYR ddPTM_BT-474_Trastuzumab_2h_R1 6 LHEEGIIYR 9 0 P26640;A0A140T936;P26640-2 P26640 VARS Valine--tRNA ligase 0 ;;;;; 193.41 3.3611e-05 2282030000.0 941011.0 1157380.0 1037927.0 1070826.0 1085963.0 1151851.0 1156340.0 629729.0 1331710.0 1045911.0 False True 935944.7013321511 1195902.6936490142 1184058.099776788 1206392.4618057369 1224253.9510430105 1072226.2515356014 1100403.4165522293 676722.5756790692 1003527.9144997593 979160.0645305412 0.9558648634029925 1.2213556669331591 1.2092589788621386 1.2320686938801393 1.2503103377995504 1.0950469595077705 1.123823832704838 0.6911255883413956 1.024886482661955 1.0 19.901185192722025 1.9013981166296308 7.633348769768567 0.8771383480716886 1.1677283895412232 0.4857808503244391 0.11718142497209127 0.19972694794182325 13.715691771646169 0.0485886112596682 0.030300756198461357 79.68895222592849 -1.9013981166296308 0.2905900414695346 LHEENFEITTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHEENFEITTLR 12 0 Q96Q11-2;Q96Q11;A0A494C1L4;F8W8C3;A0A494C181;A0A494C1D4 Q96Q11-2 TRNT1 CCA tRNA nucleotidyltransferase 1, mitochondrial 0 ; 191.53 5.2488e-06 907040000.0 417180.0 453410.0 426270.0 463880.0 449680.0 496010.0 477800.0 279940.0 559940.0 451310.0 False True 414933.94923305564 468501.47775786684 486285.11079473986 522607.16043731244 506944.0825378214 461721.9961819481 454686.9886267495 300830.5443065167 421950.28981159267 422507.00941406994 0.9820758945715088 1.108860840930383 1.1509515817716658 1.236919503801986 1.1998477451080594 1.0928149968973562 1.0761643676806842 0.7120131444060694 0.9986823423278839 1.0 18.6886157504187 1.929186000735055 7.599540298752205 0.8755630705809317 1.1326924258851976 0.5032046612755686 0.0989810204008086 0.20657995419877978 19.80498416760333 0.042299041088493375 0.026455683652921304 84.95442420819204 -1.929186000735055 0.25712935530426584 LHELTSLLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHELTSLLEEK 11 0 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 113.22 0.00084268 0.0 421700.0 423540.0 354130.0 359940.0 365490.0 462050.0 437390.0 226880.0 554250.0 353100.0 False True 419429.614055275 437637.27286466333 403988.4258468608 405508.3670945206 412032.9850710474 430109.5710487074 416231.7747079406 243810.93767329614 417662.51406949916 330564.85569588066 1.2688269996891315 1.3239074430443665 1.2221154756346202 1.226713487859665 1.2464512726365482 1.3011352042953042 1.259153136021433 0.7375585561267347 1.2634813013932378 1.0 18.334573825780847 1.7800636469175535 24.999999999916398 0.9739141102402887 1.2640474927966998 0.49157861155327875 0.12200853814360503 44.57121267686461 26858.004492200576 0.052293524432922796 0.02907624187912623 60.26478991251843 -1.7800636469175535 0.2901333825564111 LHEVECSVFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHEVECSVFYR 11 0 Q96KN1 Q96KN1 FAM84B Protein FAM84B 0 ; 155.26 3.1615e-05 483370000.0 321110.0 357620.0 318420.0 324570.0 291420.0 368990.0 364870.0 225530.0 393820.0 319060.0 False True 319381.17943867453 369523.1655141448 363250.7682437442 365660.5287210881 328530.60961833317 343482.5898090302 347219.84416124295 242360.19381813487 296768.33791763656 298697.31763899117 1.0692468950279697 1.2371157814036835 1.2161166063190867 1.2241841728322094 1.0998780043127099 1.149935300805637 1.1624471451762304 0.8113905934403269 0.9935420252963705 1.0 18.188324756456787 1.7563361333846075 24.999999999999993 0.9213052369974188 1.1693848119532968 0.6956812479125103 0.0696791068347579 3.4034087226573764 4791.673732662464 0.031024366001054862 0.017204867290678133 57.06057364034961 -1.7563361333846075 0.24807957495587796 LHEVFHDQLHTFLVMELLNGGELFER ddPTM_BT-474_Trastuzumab_2h_R1 1 LHEVFHDQLHTFLVMELLNGGELFER 26 0 O75582-3;O75582;O75582-2 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 0 152.35 3.5476e-08 40040000.0 17246.0 22896.0 18179.0 21521.0 22606.0 21198.0 21829.0 5399.5 19169.0 12372.0 False True 17153.149452210735 23658.079519075713 20738.445185299395 24245.556393402174 25484.74010374045 19732.63215472458 20773.047875122033 5802.438108105441 14445.056801440178 11582.408367797905 1.4809656944837943 2.0425872381474046 1.7905123465476873 2.0933087164161037 2.200297148440615 1.7036726325058964 1.7934998676852463 0.500969912633863 1.2471548526644232 1.0 13.499647648335788 1.7569400160592588 24.999999999786567 0.8892324274726546 1.8901892149447999 0.7398786537959281 0.259482536446965 3.335361187404231 4541.388152706329 0.1145860587526615 0.06354466502044331 57.13997105631981 -1.7569400160592588 1.0009567874721452 LHFFMPGFAPLT(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;K7ESM5 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 1 LHFFMPGFAPLT(0.782)S(0.218)R;LHFFMPGFAPLT(0.5)S(0.5)R 143.28 3.3736e-05 392420000.0 256460.0 306640.0 308710.0 289100.0 272240.0 284810.0 289330.0 209946.0 382680.0 259950.0 True False 255079.2478553848 316846.3270322058 352173.68464457797 325700.03035790904 306908.1503070998 265121.7550706251 275334.00255206623 225613.23660418647 288373.6416492845 243359.7684456083 1.0481570124948398 1.3019667509382185 1.4471319022613631 1.3383478807455558 1.2611293652496007 1.0894231070485287 1.1313866885668256 0.927076969398957 1.1849684255174535 1.0 17.892731159902574 2.6809191470588147 2.2316641777788084 1.0446617916387513 1.2986924273463447 0.46560497622465047 0.11365950410569253 0.2622667345435616 2.5763291462201834 0.04223649769631033 0.04034048917398134 479.64414460091535 -2.6809191470588147 0.25403063570759343 LHFFMPGFAPLTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q13885;Q3ZCM7;A0A075B736;Q5SQY0;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q5JP53;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;K7ESM5 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 ; 107.93 0.00064879 918640000.0 685330.0 997470.0 1431060.0 851430.0 453120.0 618010.0 845760.0 423960.0 1754190.0 647300.0 False True 681640.2594273215 1030670.1859666517 1632540.8090034942 959220.9507009158 510822.146147344 575288.4233390574 804847.3576830449 455598.0480252589 1321893.3794417197 605988.7598185887 1.124839773647584 1.700807431271823 2.6940116999731454 1.5829022158564 0.8429564705131921 0.9493384390682066 1.3281555881069267 0.7518259054205041 2.181382670921895 1.0 19.208931508556866 3.4620288894007234 11.772243193986059 1.1418119550270707 1.8780021366514907 0.25200285834638214 0.5175440566602899 0.655381919877571 505.1458916540214 0.14125864890776682 0.19287787832692388 2897.536326286423 -3.4620288894007234 0.7361901816244201 LHFTIKDPANR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHFTIKDPANR 11 1 P10253;I3L0S5;I3L3L3 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase 0 ; 174.42 6.6237e-06 988080000.0 681570.0 1058010.0 908330.0 862720.0 986190.0 990400.0 984650.0 591140.0 1116050.0 874870.0 False True 677900.5028495461 1093225.223269449 1036214.9686541074 971940.2635433265 1111775.4508939122 921935.9791508276 937018.7177717208 635253.8685480973 841014.4318038151 819035.0475861097 0.8276819225837521 1.3347722133398843 1.265165601530824 1.1866894663517327 1.3574210947023302 1.125636786689399 1.1440520409148998 0.7756125582419714 1.0268357065823785 1.0 19.643565662440864 1.8989033359077423 6.192099633063297 0.9166108997641608 1.1964202358866276 0.3489522575224685 0.15166703928820296 0.22499060470469487 11.504301947487384 0.06397887691717113 0.03897795500198496 79.23249573048432 -1.8989033359077423 0.27980933612246683 LHGELQDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LHGELQDR 8 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ;;;; 148.99 0.00051244 3179760000.0 1268436.0 1973950.0 1779260.0 1807835.0 1568972.0 1642929.0 1663494.0 1095740.0 1825020.0 1625145.0 False True 1261606.8815124878 2039651.7324720272 2029764.3423948376 2036706.7256385027 1768771.2841743736 1529357.1852688706 1583024.4400558097 1177509.6828549788 1375268.2750150955 1521426.8547433654 0.82922611598393 1.3406176748576428 1.3341189134835 1.3386819874308415 1.1625739868202407 1.0052124297009617 1.0404867214749107 0.7739508995676307 0.9039332194823628 1.0 20.536993544756932 2.4968569770228517 1.6139102198524937 0.8861598131032152 1.2285800023925295 0.4118580260695496 0.15468544063386133 0.32760752206930144 1.7285623622174335 0.07054204419956045 0.05554148199372414 313.94746237465733 -2.4968569770228517 0.3424201892893143 LHGGFDS(ph)DCS(ph)EDGEALNGEPELDLTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 2 LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK;LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK 176.18 2.5707e-13 306467000.0 204508.0 182150.0 173160.0 156154.0 147789.0 230657.0 179820.0 80390.0 250285.0 133690.0 True False 203406.95165097492 188212.75263799966 197539.42286629876 175923.0803891698 166609.05313596805 214712.22449817468 171121.41962089163 86389.11001214871 188605.6153971752 125157.78974223246 1.6252040889336554 1.5038037426646111 1.5783230374484816 1.4056103159978337 1.331192037500072 1.7155322488546914 1.367245458499412 0.6902415757746329 1.506942682398084 1.0 16.933388560690794 1.9848255473228382 23.394607359348136 1.0306686013587094 1.5158626715804215 0.48538437814957625 0.21113908895615877 217.02510192128878 334589.12218264496 0.08011899178201976 0.0537020678326023 96.56629018797027 -1.9848255473228382 0.4851940702217121 LHGGFDS(ph)DCSEDGEALNGEPELDLTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 LHGGFDS(0.827)DCS(0.173)EDGEALNGEPELDLTSK 210.93 7.4292e-26 105140000.0 23482.0 26529.0 22182.0 21204.0 24015.0 28018.0 25526.0 13713.0 27453.0 22026.0 True False 23355.575521095467 27412.001727880855 25305.032790599667 23888.424225904888 27073.16790194316 26081.181607277733 24291.209861210536 14736.333693203067 20687.576001353074 20620.281822592664 1.1326506457106649 1.3293708574752274 1.2271914132072697 1.1584916458188983 1.3129387917618263 1.2648314815320234 1.1780251147972096 0.7146523903013374 1.0032634946185206 1.0 14.331776430067226 1.8847913639424667 6.362659534340925 0.8845588072308905 1.2393226621188158 0.7127650889475082 0.09427055750229257 0.10880072104337803 5.2916713658959456 0.038923313710397034 0.02373834798471455 76.69929356899624 -1.8847913639424667 0.3547638548879253 LHGGFDSDCS(ph)EDGEALNGEPELDLTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 LHGGFDS(0.449)DCS(0.551)EDGEALNGEPELDLTSK 85.412 0.005495399999999999 90968000.0 31716.0 31497.0 29590.0 29228.0 29080.0 34574.0 34476.0 14332.0 36114.0 29972.0 True False 31545.244579978877 32545.358604661425 33756.01479910935 32928.261803185625 32783.165629336094 32183.980758441725 32808.264168890346 15401.526616421372 27214.188602807168 28059.16129967983 1.124240466173122 1.1598835138751202 1.2030300705921144 1.1735297948325119 1.1683587146173955 1.1470043746036331 1.169253201066445 0.5488947603219029 0.9698860315941695 1.0 14.77618426638053 1.766131286249047 24.999999999999744 0.7964370506948647 1.1649120028110893 0.6117777070818028 0.11677231959604922 9.993214870658173 9066.953940787422 0.049635465040707545 0.027528197639315487 58.3621505083274 -1.766131286249047 0.3684749521162246 LHGLDEEAEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHGLDEEAEQK 11 0 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RG31 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 ; 240.1 1.1356e-15 1465600000.0 2047430.0 1772300.0 1593230.0 1501170.0 1466670.0 2276200.0 2104100.0 1108450.0 2836600.0 1861400.0 False True 2036406.864370858 1831289.9341220278 1817542.935396586 1691217.9680815712 1653441.7308658315 2118851.651598455 2002316.644557435 1191168.1675950498 2137557.93849263 1742603.8583752834 1.1685999974024515 1.0508928494106693 1.0430040807387928 0.9705120070481068 0.9488339664342405 1.2159112591280306 1.1490371922074676 0.6835564846652156 1.2266459345990328 1.0 20.732813211930246 4.9480463464054605 1.3868865356524884 1.0078206861542958 1.3044512229426897 0.05847694112217905 0.14900139289565822 5.530693742206762 6.6033598324562215 0.04210593647934605 2.620656641199558 88725.06913119029 -4.9480463464054605 0.2966305367883939 LHHCPGNHS(ph)WDSTISGSQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LHHCPGNHSWDSTISGSQR 19 0 O43353-2;O43353 O43353-2 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 1 LHHCPGNHS(1)WDSTISGSQR;LHHCPGNHS(1)WDSTISGSQR;LHHCPGNHS(1)WDSTISGSQR 164.05 4.0955e-11 683810000.0 182228.0 178293.0 165671.0 190634.0 182833.0 201243.0 186139.0 116011.0 229027.0 153699.0 True False 181246.90469543412 184227.3747246057 188996.03676185352 214768.24485385578 206115.69881390696 187331.54508506643 177134.74544996748 124668.32991192171 172586.36465456928 143889.7982316658 1.259623037372132 1.2803365977898968 1.3134776689141343 1.4925884078875007 1.4324552633123862 1.3019098461967293 1.2310445050786476 0.8664153501084414 1.1994343363849975 1.0 17.134604783246605 1.9674275235140835 4.441622123651022 1.0120560137025172 1.348635152154094 0.6744279428204456 0.1006121284325466 0.1179029102789956 5.293965318578818 0.04627333940604341 0.028373386057203805 92.77426524745938 -1.9674275235140835 0.33657913845157683 LHHQNQQQIQQQQQQLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHHQNQQQIQQQQQQLQR 18 0 H7C308;G3V1P5;Q96RN5-3;Q96RN5-2;Q96RN5 H7C308 MED15 Mediator of RNA polymerase II transcription subunit 15 0 ; 223.72 2.889e-19 146100000.0 48084.0 48779.0 47236.0 52702.0 50274.0 53287.0 53103.0 6271.4 52019.0 28892.0 False True 47825.121086634645 50402.57952747182 53886.418217327824 59374.067796342184 56676.095902656256 49603.395114105544 50534.20501684023 6739.403713523936 39199.61446888816 27048.087824314316 1.7681516489177933 1.8634433552143181 1.9922450181076294 2.195129954545959 2.0953827224602715 1.8338965562480762 1.8683097062193637 0.24916377665210362 1.449256403021972 1.0 14.723238985287677 1.7631016905712558 24.999999999999098 0.8403168638667458 1.9549919063915082 0.7197182637575235 0.29832865528645786 6.462404750071801 6587.8769954631125 0.12985682727104886 0.07201616072990943 57.95643862330262 -1.7631016905712558 1.1146750425247625 LHIIEVGTPPTGNQPFPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHIIEVGTPPTGNQPFPK 18 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 261.78 8.3833e-31 2511400000.0 2288380.0 2400500.0 2132370.0 2152090.0 1932730.0 2465980.0 2457450.0 1767900.0 2836600.0 2250140.0 False True 2276059.61634292 2480399.1913671065 2432589.1611077017 2424544.373341242 2178851.709311785 2295512.606892526 2338573.755129355 1899829.6752142983 2137557.93849263 2106534.1387582277 1.0804760172007586 1.1774787532421702 1.1547826908429213 1.1509637222259672 1.034330120373073 1.0897106126396312 1.1101523170699297 0.9018746196699291 1.014727413699875 1.0 21.006439865911787 2.1750517749508522 1.0777287803929287 0.9644419380878653 1.133541207807098 0.5470815058273908 0.054207381729336486 0.35441633105661685 0.7777578293186831 0.03949591908257271 0.021100104985497373 149.6414042301633 -2.1750517749508522 0.16909926971923284 LHKTEDGGWEWS(ph)DDEFDEESEEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LHKTEDGGWEWSDDEFDEESEEGK 24 1 O95747;C9JIG9 O95747 OXSR1 Serine/threonine-protein kinase OSR1 1 LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKT(0.001)EDGGWEWS(0.999)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKT(0.062)EDGGWEWS(0.938)DDEFDEESEEGK 273.0 3.6487e-52 982060000.0 572578.0 358739.0 287013.0 232108.0 308064.0 469089.0 391422.0 294436.0 807082.0 364681.0 True False 569495.3036673965 370679.41075269505 327421.93563828216 261492.84900143082 347294.124361616 436661.98154673027 372487.42248275294 316408.3094357131 608187.4554447262 341406.7463608879 1.6680845054696285 1.085741317955282 0.9590376848973484 0.7659275974734747 1.0172444688439306 1.2790080635522993 1.0910370883210694 0.9267781401755023 1.7814160438465227 1.0 18.38113204142939 1.273618428658175 24.99999735457769 1.3907124448073447 1.0785080857439935 0.13750450526442415 0.2884564374873432 271.9547649067116 193933.08353180852 0.1861302586420383 0.06796319201404062 18.776663732855944 -1.273618428658175 -0.3122043590633512 LHLDEDYPCSLVGNWNTWYGEQDQAVHLWR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLDEDYPCSLVGNWNTWYGEQDQAVHLWR 30 0 Q9BPW8;H7C2U6 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 0 43.93600000000001 0.07407799999999999 500960000.0 76691.0 105700.0 90261.0 88780.0 96811.0 152360.0 94946.0 57919.0 105530.0 104170.0 False True 76278.10417717112 109218.16060300083 102968.9642373237 100019.53889718163 109139.30700624679 141827.7118168617 90353.09925105759 62241.20988672268 79523.54552955194 97521.78141557609 0.7821647950843118 1.1199360698466139 1.0558560635652785 1.0256123036858984 1.1191274956428878 1.4543183046716692 0.9264914764633952 0.6382288036914548 0.8154439385256196 1.0 16.573436859239568 2.002690095439488 24.99967559896692 0.7788605842644467 1.0988494562475195 0.3319553515299376 0.1745661805760359 78.76957878768185 732017.2372005703 0.06539918378981192 0.04802783074035801 100.62133972222169 -2.002690095439488 0.3199888719830728 LHLETPQPS(ph)PQEGGSVDIWR ddPTM_BT-474_Trastuzumab_2h_R1 3 LHLETPQPSPQEGGSVDIWR 20 0 O14613 O14613 CDC42EP2 Cdc42 effector protein 2 1 LHLETPQPS(1)PQEGGSVDIWR;LHLETPQPS(1)PQEGGSVDIWR;LHLETPQPS(1)PQEGGSVDIWR 251.82 2.9685999999999994e-36 1419740000.0 728160.0 945650.0 943480.0 964900.0 1033280.0 951360.0 869430.0 418185.0 800230.0 717940.0 True False 724239.6674661809 977125.3885925041 1076313.7831248287 1087056.2410665741 1164862.0832696157 885594.7224605522 827372.3493548643 449392.08820040274 603024.0390326298 672120.4545406428 1.0775444528929843 1.45379504818123 1.601370373202568 1.6173533088046206 1.7331150620400841 1.3176131100872497 1.2309882012448612 0.6686183780964342 0.8971963804386275 1.0 19.35836028421991 2.0457345498316686 2.468053935384593 0.828860201843872 1.4980381450122602 0.6730235420118731 0.1889632004524664 0.1600646320097879 1.8723548086004886 0.098150370367831 0.05689087527752251 111.10524204605291 -2.0457345498316686 0.6691779431683882 LHLGFIEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHLGFIEIR 9 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ; 149.72 8.695299999999999e-05 1919160000.0 1821700.0 2486300.0 2509300.0 2117500.0 1479280.0 1816090.0 1980730.0 824370.0 2885400.0 1649240.0 False True 1811892.169609896 2569054.9924999103 2862587.628773409 2385575.282887835 1667657.5396205047 1690547.972916017 1884914.5227766007 885888.6754660412 2174331.8323791297 1543984.0912145996 1.1735173826723448 1.6639128648527217 1.8540266347702514 1.5450776316038233 1.0801002090044953 1.0949257719269119 1.2208121401651248 0.5737680073951688 1.4082605156045729 1.0 20.558226456875733 3.2277871968915415 4.199701212692673 1.0163447481434735 1.5945960667372403 0.4722000490224254 0.25441821665418524 0.16462511433244342 6.663671511330623 0.07518267509834313 0.09643629800903829 1689.6128231116695 -3.2277871968915415 0.5782513185937668 LHLGIPEAVFVEDVDSFMK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHLGIPEAVFVEDVDSFMK 19 0 P61758 P61758 VBP1 Prefoldin subunit 3 0 ; 258.16 5.0996e-31 812910000.0 519890.0 486780.0 445940.0 436870.0 462920.0 539920.0 530180.0 218585.0 665020.0 474210.0 False True 517090.9700052089 502982.17803527636 508724.4758200352 492177.69720670953 521870.11805819365 502596.60123496957 504533.1679157178 234896.92265213953 501134.7318114538 443945.51180839376 1.1647622427780837 1.1329817841527425 1.1459164746316886 1.108644381158048 1.1755274108580966 1.132113261349716 1.136475433348842 0.5291120563316354 1.1288203585392769 1.0 18.760023090949677 1.9282547917376465 24.079628962842705 0.8334395093320169 1.1421457520197782 0.38131826470574015 0.145104952352321 81.16344867321749 27240.06196414531 0.05590438268536954 0.03607851635331614 84.7724611062659 -1.9282547917376465 0.30870624268776126 LHLGTTQNSLTEADFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLGTTQNSLTEADFR 16 0 O75351 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 0 230.93 1.8022000000000004e-15 375370000.0 117060.0 146150.0 148630.0 145070.0 129560.0 148000.0 143180.0 86837.0 160450.0 151120.0 False True 116429.76196658878 151014.51440045927 169555.81208488083 163435.84712563778 146058.69803771604 137769.1083545259 136253.8363992842 93317.21788935138 120909.24741984854 141475.39221965868 0.8229682925057147 1.0674260168580405 1.1984827143763892 1.1552245557438192 1.0323964878000917 0.97380262526943 0.9630921269172568 0.6596003476312293 0.8546309398607034 1.0 17.110191611522254 2.145601864821955 2.3695216636359824 0.8045770197859801 1.0615614180169544 0.32059804640671485 0.12556348091476605 0.2774448713053791 3.1014923777306276 0.06075315627669094 0.038408856393481516 139.8304852649863 -2.145601864821955 0.2569843982309743 LHLIAQELPFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLIAQELPFDR 12 0 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 EXOC5 Exocyst complex component 5 0 152.47 6.9829e-05 287030000.0 105490.0 111860.0 110650.0 102540.0 103940.0 120190.0 114710.0 63684.0 117500.0 110300.0 False True 104922.05356104072 115583.19247920199 126228.55821295877 115521.55348633681 117176.14289935332 111881.54819682751 109161.0390652456 68436.42346079965 88543.69941933439 103260.55956741892 1.0160903059268918 1.1193353296108917 1.2224276019978761 1.118738402835331 1.1347618431493092 1.0834877194693096 1.0571416572072152 0.6627547221077902 0.857478400177796 1.0 16.65592979561263 1.8998376051793522 6.119921091669183 0.8110213878154061 1.11778898477356 0.6446094075492421 0.09101838959006228 0.12382850131666288 6.275211226773039 0.038863025762190764 0.02364466764930449 79.4031268766347 -1.8998376051793522 0.3067675969581539 LHLIYLINDVLHHCQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHLIYLINDVLHHCQR 16 0 Q8IWX8 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ; 192.65 1.7407e-10 429490000.0 46275.0 59508.0 54808.0 63003.0 50518.0 53139.0 52579.0 10265.2 61512.0 39836.0 False True 46025.86054163583 61488.68780665436 62524.490000323945 70979.17334015688 56951.167856354965 49465.626005751 50035.55289871463 11031.241349629416 46353.19181857106 37293.63237468455 1.2341479660447032 1.648771757840187 1.6765459950950354 1.9032518105782195 1.5271016586470731 1.3263826250223074 1.3416647752628 0.29579423207693706 1.2429251018743956 1.0 15.186641701030261 1.9443192664620847 6.602576147516794 0.7749946240112463 1.5590869918720598 0.5508303540515975 0.2830366217148333 0.15610346182308782 14.8692511099707 0.12193810418430386 0.07587762678122881 87.96689574408842 -1.9443192664620847 0.7840923678608135 LHLPIGDSASNLLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHLPIGDSASNLLFK 15 0 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 0 ; 173.06 9.9113e-07 652050000.0 979580.0 1105280.0 977320.0 978180.0 966640.0 1148110.0 1171660.0 741950.0 1362850.0 1167740.0 False True 974306.0501215706 1142068.5766441303 1114918.160982276 1102017.4877049457 1089735.8742758408 1068743.8580602333 1114982.3296241453 797318.0765457607 1026993.8787543824 1093213.833447488 0.891230992795858 1.0446891007979446 1.019853689068627 1.0080530029790193 0.9968185920583539 0.9776164784614115 1.019912386315136 0.7293340535505212 0.9394263476484936 1.0 20.060144190170433 1.7767881404330146 24.999999999738453 0.8610299061469598 0.9969828782237891 0.26081920766874545 0.07603178119999503 45.64908821946867 29865.62393198921 0.03276947872697775 0.018195245249532623 59.81197463063033 -1.7767881404330146 0.13595297207682921 LHLPPALSPEEAESALEAAHYFTEDS(ph)SSEEALPQEEQEGSGSEER ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLPPALSPEEAESALEAAHYFTEDSSSEEALPQEEQEGSGSEER 45 0 Q66K14-2;G3V133 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 LHLPPALS(0.007)PEEAES(0.007)ALEAAHY(0.007)FT(0.007)EDS(0.324)S(0.324)S(0.324)EEALPQEEQEGSGSEER 70.40100000000002 0.0017203 29883000.0 3670.9 3927.2 4902.1 5548.5 5185.4 4131.9 4869.3 3708.2 4756.9 4249.7 True False 3651.1362822753294 4057.9144779574694 5592.2730701829705 6250.939531099479 5845.729953726253 3846.271478446384 4633.753356467623 3984.924713858061 3584.625734194315 3978.4805076487823 0.9177212946641008 1.019965906620875 1.4056303806017423 1.5711876730530177 1.4693373368268643 0.9667689639428366 1.1647043004380828 1.001619765686143 0.901003719209566 1.0 11.958001815267519 2.719603239869137 24.544555322447586 1.0196330996154037 1.2860173287250722 0.32587751246469443 0.19346424576125446 897.8335357999025 1162444.0863678 0.06991348013750501 0.06601974780764729 524.3282287586327 -2.719603239869137 0.2663842291096685 LHLQGQTMQDPFGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LHLQGQTMQDPFGEK 15 0 Q9H832-2;Q9H832 Q9H832-2 UBE2Z Ubiquitin-conjugating enzyme E2 Z 0 ;; 190.11 2.3026e-07 1890810000.0 2362330.0 2116640.0 1882718.0 1798199.0 1869957.0 2433460.0 2260140.0 858310.0 2736600.0 2029360.0 False True 2349611.4777595378 2187091.082864102 2147788.3295217846 2025850.809026504 2108084.9398465077 2265240.6379486774 2150808.393626748 922361.450609867 2062201.598561283 1899844.507377492 1.2367388323810222 1.1511947816630106 1.1305074289929913 1.0663245340130223 1.109609197837178 1.1923294928360064 1.132097066509765 0.4854931269523086 1.0854580943615777 1.0 20.85744991545134 1.8902516186957146 13.51795802464923 0.801545168977747 1.1433913380951373 0.4102011456136113 0.15436859040648285 0.7116635325554806 84.81231066391734 0.06037672969027034 0.03876945394589543 77.66969839128132 -1.8902516186957146 0.3418461691173903 LHLS(ph)PPLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLSPPLGR 9 0 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 LHLS(1)PPLGR 93.839 0.005879100000000001 140780000.0 103280.0 112130.0 95954.0 108950.0 106020.0 132190.0 113480.0 95451.0 123580.0 130540.0 True False 102723.9519554867 115862.17926598365 109463.48915288057 122743.05882910478 119521.01857022748 123052.016441789 107990.53886430194 102574.03831035698 93125.36488716042 122208.82543908333 0.8405608317272542 0.9480672025911643 0.8957085444491417 1.004371479621885 0.9780064421763416 1.0068995917412362 0.8836558118965909 0.8393341310811175 0.7620183284846318 1.0 16.89898894909792 -0.8879582119864237 4.917982522783816 1.0000002684407083 0.9092427612027655 0.12046534229892458 0.07545822373473245 2.7226314400023373e-07 6.1630223805769e-08 0.07808208643993128 0.01840406174317246 0.129432037555673 0.8879582119864237 -0.09075750723794285 LHLSGIDANPNALFPPVEFPAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHLSGIDANPNALFPPVEFPAPR 23 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 177.03 5.5826e-17 3672400000.0 551320.0 1238050.0 1380760.0 1582040.0 1597160.0 1409140.0 1515680.0 671100.0 1034300.0 1266870.0 False True 548351.754377411 1279257.7458329708 1575159.006218932 1782326.1017897842 1800548.858891008 1311729.4685587604 1442360.7679401247 721180.8897767501 779410.623909936 1186017.271978025 0.4623471911693804 1.0786164553062878 1.3281079824342703 1.502782584959528 1.5181472491442511 1.1059952494377034 1.2161380799577843 0.6080694664538683 0.6571663350315671 1.0 20.177693589339288 1.7572069538000017 10.019272266346961 0.728276612118351 1.198952868695304 0.2925820620429318 0.2950361689126433 0.17676001408429526 73.07956795833711 0.14542226001723202 0.07945251275270297 57.175102755946625 -1.7572069538000017 0.4706762565769529 LHLVDLAGSER ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLVDLAGSER 11 0 O95239;O95239-2;Q2VIQ3;Q5JRK0;H0Y718;J3KPF9;A0A087X011;E9PES4;Q9Y496 O95239;J3KPF9 KIF4A;KIF4B;KIF6;KIF3A Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein;Kinesin-like protein KIF3A 0 108.9 0.0020005 113220000.0 53724.0 70209.0 68358.0 60865.0 55499.0 65725.0 64897.0 35306.0 69894.0 52336.0 False True 53434.755953297514 72545.86412276323 77982.21222161262 68570.5027593709 62566.46868165492 61181.5854500082 61757.684179384945 37940.71300023537 52669.560231616655 48995.87167289612 1.0905971080591454 1.4806525865503615 1.591607814271245 1.3995159269164141 1.2769742948826008 1.2487089903913895 1.2604670979565098 0.7743655068233776 1.0749795530375832 1.0 15.580372574329301 1.9061916662097276 4.880552974629814 0.9357418397885532 1.3569503020735112 0.5992482379607451 0.1455644675848868 0.14824666814110093 5.610181407336423 0.06925058733609057 0.04082801009414946 80.57339555037336 -1.9061916662097276 0.421208462284958 LHLVESLLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHLVESLLSR 10 0 J3KN16;Q5VYK3;R4GMY1 J3KN16 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog 0 150.94 2.0679e-05 118440000.0 55496.0 72256.0 71249.0 64846.0 62064.0 69309.0 69769.0 36121.0 83196.0 63087.0 False True 55197.21570218521 74660.99728032555 81280.23989259017 73055.49695118982 69967.48251785134 64517.83196583664 66394.00692653761 38816.53243872152 62693.46056928467 59060.733648501955 0.934583983170437 1.264139347212787 1.3762145315756977 1.2369554598826566 1.1846700539526067 1.092398078727102 1.1241649540230805 0.6572307866972472 1.0615083270452204 1.0 15.849911657194388 1.9286482385561956 7.973240850455953 0.8721034239024373 1.1896329635575407 0.4081451398883226 0.14682309229352242 0.2689601282932147 27.417374362332758 0.0623629163809852 0.039139461805440194 84.84929507324219 -1.9286482385561956 0.31752953965510333 LHNAIEGGTQLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LHNAIEGGTQLSR 13 0 O60832;O60832-2;C9IYT0;H7C0M1;H7BZF2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 ;;; 171.26 2.5402e-05 1322750000.0 955240.0 1122100.0 1111800.0 1097930.0 1109090.0 1175420.0 1060730.0 855560.0 1406070.0 1066330.0 False True 950097.0939771404 1159448.4201762255 1268331.7760611612 1236927.8254267022 1250326.0374085417 1094165.9820410586 1009418.4375178977 919406.2316456501 1059562.888872712 998275.9064689564 0.9517379792704491 1.1614508701080037 1.2705222752970478 1.2390640878050352 1.2524854394524279 1.096055684556466 1.0111617749930017 0.9209941116356504 1.0613928293837485 1.0 19.929079081464753 2.3731705084719175 3.039943723237472 0.9830525449309375 1.182848665475944 0.4559458860824277 0.08995828751892082 0.21730535770193618 4.05376415311056 0.03560463855246148 0.02866625934506806 236.14051631160032 -2.3731705084719175 0.1997961205450065 LHNGNAS(ph)PPRVPS(ph)PPPAPEPPWHCGDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LHNGNASPPRVPSPPPAPEPPWHCGDR 27 1 O15037 O15037 KHNYN Protein KHNYN 2 LHNGNAS(1)PPRVPS(1)PPPAPEPPWHCGDR;LHNGNAS(1)PPRVPS(1)PPPAPEPPWHCGDR;LHNGNAS(1)PPRVPS(1)PPPAPEPPWHCGDR;LHNGNAS(1)PPRVPS(1)PPPAPEPPWHCGDR 109.49 0.0020345 3277810000.0 876168.0 889747.0 822850.0 913744.0 878377.0 982610.0 847247.0 210496.0 816268.0 684838.0 True False 871450.808839416 919361.6910315808 938700.1276595863 1029423.8967117162 990233.1044016278 914684.48351514 806262.4258121533 226204.2803970301 615109.6888308198 641131.0525206905 1.359239745779265 1.433968433469242 1.46413143454675 1.6056372447792095 1.544509660713511 1.4266731893876274 1.2575625882449886 0.35282065890846875 0.95941334679148 1.0 19.290259760292933 1.9347897664712954 5.820635258808397 0.7152777167453507 1.469966339235548 0.7570378451564634 0.17683542497385885 0.09266855062308167 6.077163640437371 0.07540187070122069 0.04612549114210672 86.0577062685495 -1.9347897664712954 0.7546886224901973 LHNQQALSSSIEEGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHNQQALSSSIEEGLR 16 0 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 0 196.22 4.6457e-11 357690000.0 99702.0 130210.0 125680.0 120530.0 105130.0 132700.0 130640.0 74917.0 144620.0 110400.0 False True 99165.21550993365 134543.96113639293 143374.6515698569 135789.0856417806 118517.6823456707 123526.76134219968 124320.4441067362 80507.68696081772 108980.33880871606 103354.17748180471 0.9594698339831642 1.301775742543925 1.387216802098761 1.313822904407381 1.146714000665677 1.1951791824181108 1.2028584343252362 0.7789495202067757 1.054435741873151 1.0 16.657237176799416 1.7611729510021061 24.999999999999996 0.92699920511793 1.2256085943357302 0.4851711879227867 0.1271558162134185 8.978663454126984 9934.457634514765 0.05861504318499813 0.032506126383486544 57.699619737926966 -1.7611729510021061 0.2986093892178002 LHNQVNGTEWSWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHNQVNGTEWSWK 13 0 O14980 O14980 XPO1 Exportin-1 0 ; 207.04 5.7044e-08 2976200000.0 2720800.0 2797800.0 2513600.0 2700900.0 2523200.0 3197900.0 3220700.0 1858790.0 3608500.0 2925500.0 False True 2706151.5151092983 2890923.081694188 2867493.031397137 3042833.6630704817 2844514.5638219025 2976836.70004688 3064902.43673121 1997502.3485443667 2719233.526422706 2738792.085353441 0.9880821291916613 1.0555467489315147 1.0469918643083442 1.1110130189666456 1.0386018635857193 1.086915913028396 1.1190708681837322 0.7293369800601673 0.9928586915979016 1.0 21.38510831772788 1.759465503606775 24.999999999999492 0.8820163994960103 1.0645285429886246 0.4431966515769903 0.07877721351638521 7.141486807466596 8547.781657145673 0.034006115686350986 0.018858526473213223 57.473216555026966 -1.759465503606775 0.18251214349261435 LHPCTSSGPDS(ph)PYPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHPCTSSGPDSPYPAK 16 0 Q96H55;Q96H55-4 Q96H55 MYO19 Unconventional myosin-XIX 1 LHPCTSSGPDS(1)PYPAK 115.57 0.00031905 211210000.0 223510.0 222820.0 206010.0 218300.0 204300.0 241740.0 190140.0 176970.0 234830.0 184760.0 True False 222306.6469942956 230236.42900246565 235014.4173289802 245936.75761719665 230316.3940190293 225029.08279475046 180942.2017946632 190176.4000354513 176959.2930607856 172968.45861900598 1.285243846012213 1.3310890947441616 1.3587125606908572 1.4218589885160302 1.3315514045618133 1.300983338762458 1.0460994058646313 1.0994860077602293 1.023072613779661 1.0 17.400149455982923 2.2911322593141352 4.018295638627439 1.0533945229939812 1.3470710177170813 0.9270911055889762 0.04072980393286982 0.05672912986144643 1.8862237310334309 0.015884102944611504 0.01263191862179275 195.4934717675437 -2.2911322593141352 0.2936764947231001 LHPESK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHPESK 6 0 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 ; 118.06 0.022193 2464220000.0 3552800.0 3672800.0 3221300.0 2948100.0 2984400.0 2733900.0 3569600.0 3440500.0 4603100.0 3827800.0 False True 3533672.1195531855 3795046.9277455136 3674831.039958466 3321329.157724494 3364445.6500753337 2544911.9279083675 3396924.8108037766 3697247.580505009 3468727.683379902 3583506.526855548 0.9860933956924892 1.0590316772983774 1.0254846788804521 0.9268377587242435 0.9388696866774132 0.7101736550041879 0.9479332004411074 1.0317401552912104 0.9679702429406869 1.0 21.77294055150905 3.741154886400926 22.238604909598482 0.9315718242842307 1.0270861294617868 0.20519983169771827 0.08252572712987204 83.55390903606038 716212.7774471522 0.02355194523166688 0.040051272856957795 5510.041710095528 -3.741154886400926 0.0955143051775561 LHPLYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHPLYSR 7 0 B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;A0A2R8YGT1 B7WPL9 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 0 60.358 0.097987 482770000.0 95203.0 105980.0 112140.0 104590.0 83024.0 112390.0 105900.0 51643.0 123580.0 118220.0 False True 94690.43762604777 109507.48023373711 127928.3372616466 117831.08327614579 93596.61427819802 104620.74383760229 100777.212422714 55496.86289784046 93125.36488716042 110675.09838676585 0.855571298388568 0.9894500373611742 1.1558908835534754 1.0646575877834108 0.8456881054771213 0.9452961448653429 0.910568085248385 0.5014394719930656 0.8414301522617489 1.0 16.755971130384776 1.9754655252937479 18.221680763560023 0.7206699513081357 0.9783847702527322 0.23397595804053084 0.146126854434379 25.198343933491316 18713.424573884226 0.059516834102491235 0.03883576522671268 94.50733686462237 -1.9754655252937479 0.25771481894459647 LHPPS(ph)PVPQGVCPAHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LHPPSPVPQGVCPAHR 16 0 Q96F44-3;Q96F44;Q96F44-2 Q96F44-3 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 LHPPS(1)PVPQGVCPAHR;LHPPS(1)PVPQGVCPAHR;LHPPS(1)PVPQGVCPAHR;LHPPS(1)PVPQGVCPAHR 137.61 1.8514e-05 1893170000.0 509650.0 579890.0 566930.0 525360.0 519610.0 560810.0 550780.0 427295.0 551030.0 531630.0 True False 506906.10102743784 599191.2880990923 646748.8161561023 591870.522133626 585779.2535302378 522042.52470474044 524136.66721607535 459181.9226600451 415236.0399237096 497700.91824865865 1.01849541047899 1.203918389798364 1.2994728208095794 1.1892092227121809 1.1769704094409044 1.0489081003541978 1.0531157327586222 0.9226061391966954 0.834308366126525 1.0 18.92491952319891 2.2328577629527233 1.2791179698006712 0.9093687380032349 1.1882092243675662 0.6582417101362861 0.07877650200125474 0.26294992398408545 0.8332379336888196 0.050325621991834046 0.028744853631735814 170.9455354709439 -2.2328577629527233 0.27884048636433123 LHPTDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHPTDK 6 0 G8JLM4 G8JLM4 USHBP1 0 110.24 0.028873000000000006 797270000.0 1373200.0 1365500.0 1234000.0 1236200.0 1192200.0 1064700.0 1588500.0 1288000.0 1815500.0 1523100.0 False True 1365806.8437768624 1410949.8420378184 1407736.4738797208 1392702.7932495582 1344019.6032769762 991099.7950342143 1511658.1863407076 1384117.1003314762 1368094.351453631 1425894.4540084836 0.9578597068929593 0.9895191317080638 0.9872655510527326 0.9767222176468835 0.9425800061839498 0.6950723402058464 1.0601473216275752 0.9707009494569794 0.9594639684638897 1.0 20.443435765472024 -0.8942008033827709 5.766642308933128 1.0000000206953035 0.9507257272943586 0.027757069799999146 0.09024425571175894 2.3966169389201655e-08 4.49297370608264e-09 0.0869373908696305 0.02049133099120893 0.12758487622066897 0.8942008033827709 -0.04927429340094491 LHPVILASIVDSYER ddPTM_BT-474_Trastuzumab_2h_R1 2 LHPVILASIVDSYER 15 0 O00303;E9PQV8;A0A1W2PP79 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 0 ; 274.24 1.797e-33 1541170000.0 930810.0 1126390.0 1003610.0 1003300.0 990890.0 1093700.0 1146390.0 819520.0 1140280.0 1120630.0 False True 925798.6223827127 1163881.210232867 1144909.5644654993 1130317.6771293343 1117073.96803483 1018095.0932928707 1090934.736064919 880676.7438382388 859273.2729691789 1049110.4339803888 0.8824605993767276 1.1093981839614642 1.091314629406213 1.0774058102166044 1.0647820590217403 0.9704365339596862 1.0398664437316159 0.839450943688452 0.8190494014143428 1.0 20.000735119660767 1.758885892633444 8.227385928484619 0.8733549412192357 1.039363292726325 0.43110340329722185 0.076982730116244 0.12021882328748765 27.948331861857227 0.03556433076779715 0.01933705211398453 57.39656375598825 -1.758885892633444 0.16600835150708926 LHQEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHQEGK 6 0 O43488;H7C5H7;H7C4Q7 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 0 75.26899999999998 0.078136 818040000.0 1733400.0 1620600.0 1364700.0 1195400.0 1393600.0 1091100.0 1737200.0 1374900.0 2295500.0 1755000.0 False True 1724067.5669988466 1674540.6913266107 1556837.897814955 1346737.5174328783 1571066.6994856521 1015674.8251731299 1653164.999251547 1477502.0196007378 1729804.7831241018 1642994.397468908 1.0493447632291593 1.0192004877839516 0.9475612943131881 0.8196847898614724 0.9562215804910454 0.6181852030279674 1.0061902839098582 0.899273924413183 1.0528366900026733 1.0 20.647896130100534 4.168071692250215 3.139230669046399 0.898787674279013 1.0399516405929934 0.15418189783339964 0.11591753841477939 0.40639472461174886 7.944100064121716 0.02889903943092059 0.0786121706253878 14725.555681713884 -4.168071692250215 0.14116396631398043 LHQLAMQQSHFPMTHGNTGFSGIESS(ph)SPEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 F8VZX2;Q15366;Q15366-6;Q15366-2;Q15366-3;Q15366-5;Q15366-4;F8VRH0 F8VZX2;Q15366;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 LHQLAMQQSHFPMTHGNTGFSGIES(0.048)S(0.908)S(0.042)PEVK 56.864 0.016612000000000002 2367300000.0 42240.0 48466.0 38832.0 50250.0 53526.0 45685.0 42291.0 31991.0 75655.0 48168.0 True False 42012.58453330519 50079.16151168434 44299.20806620528 56611.644847751406 60342.21882654208 42526.903480922396 40245.22276269119 34378.330867006414 57010.838975061626 45093.87700130045 0.9316693823441619 1.1105534684950713 0.9823774537045851 1.2554175558273422 1.3381466141135279 0.9430748986097598 0.8924764389083373 0.7623724805479686 1.2642700687150388 1.0 15.460643932330296 2.529261330274316 24.99530263651606 0.9340671120500418 1.124203262125028 0.15839973068013624 0.16277256810756702 499.7504709916441 239573.35145749984 0.05392833327609613 0.05084368559047057 338.2683229321988 -2.529261330274316 0.1901361500749862 LHQLAMQQSHFPMTHGNTGFSGIESSS(ph)PEVK ddPTM_BT-474_Trastuzumab_2h_R1 8 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 F8VZX2;Q15366;Q15366-6;Q15366-2;Q15366-3;Q15366-5;Q15366-4;F8VRH0 F8VZX2;Q15366;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 LHQLAMQQSHFPMTHGNTGFSGIES(0.001)S(0.209)S(0.79)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.009)S(0.207)S(0.784)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.001)S(0.029)S(0.97)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.007)S(0.217)S(0.776)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.002)S(0.122)S(0.876)PEVK;LHQLAMQQS(0.001)HFPMT(0.001)HGNT(0.006)GFS(0.006)GIES(0.076)S(0.31)S(0.601)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.001)S(0.023)S(0.976)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.004)S(0.17)S(0.826)PEVK 205.11 7.9403e-26 20029989000.0 2257855.0 2122379.0 2206145.0 2283812.0 2093516.0 2990176.0 2950472.0 946156.0 3535450.0 2193602.0 True False 2245698.9595512724 2193021.1020097993 2516751.039843906 2572942.365035478 2360112.853358503 2783472.1712371795 2807746.397462416 1016762.9652028171 2664185.7201028606 2053604.442322843 1.0935401741784072 1.0678887602761813 1.2255286305269166 1.2528909229107477 1.1492538702774555 1.355408136967594 1.3672284397118653 0.49511139742800275 1.2973217554444836 1.0 20.969726891167344 1.76849135478933 24.99999999999927 0.8803758716147196 1.2148535726183922 0.27889902060092764 0.20536214281106108 25.08296522938359 20962.3150775705 0.09095650729257275 0.05044911538300732 58.68016884325675 -1.76849135478933 0.3344777010036726 LHQNICR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHQNICR 7 0 Q9NSD9;Q9NSD9-2 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit 0 ; 89.427 0.017881 85089000.0 163545.0 174637.0 196423.0 129228.0 117341.0 125595.0 150210.0 121356.0 236213.0 169990.0 False True 162664.49189155787 180449.68697470418 224077.65106067798 145588.25154995456 132283.68081540338 116912.9132688289 142943.76844207622 130412.20095328175 178001.4712420361 159141.0926642389 1.02214009699401 1.13389749909172 1.4080439395589945 0.9148375765970227 0.8312352177605052 0.7346494315927288 0.8982203530779047 0.8194753395870523 1.1185135671877622 1.0 17.27994688413603 3.5856708250671976 8.125408039491015 0.8784961606820358 1.1818855393570935 0.48592610290950267 0.13349135120514619 0.2288440618374286 15.477372715438912 0.035042211876098295 0.05434261186366818 3851.8629377447583 -3.5856708250671976 0.30338937867505766 LHRQTAEYSAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHRQTAEYSAFK 12 1 Q5BJF6-9;Q5BJF6-3;Q5BJF6-4;Q5BJF6-8;Q5BJF6-5;Q5BJF6-6;Q5BJF6-10;Q5BJF6-7;Q5BJF6-2;Q5BJF6 Q5BJF6-9 ODF2 Outer dense fiber protein 2 0 ; 69.45100000000001 0.045546 1168720000.0 1178100.0 2534200.0 2243300.0 2369300.0 2511800.0 1893640.0 1926880.0 1719450.0 1053310.0 2220500.0 False True 1171757.240499214 2618549.3150437474 2559137.1408868534 2669253.1370701995 2831662.841394993 1762737.1239490842 1833669.4530035774 1847764.090190187 793735.8641308859 2078785.7889343037 0.5636738747862613 1.2596532692222007 1.2310730400936614 1.2840443451552557 1.362171540939124 0.847964775078031 0.8820867752533628 0.8888670011244638 0.3818266741845475 1.0 20.98730967087572 2.609033685295501 6.484292630776102 0.8030893478457958 1.1590341034277953 0.3053207658206857 0.25630287033981614 0.30086747881313997 14.598518707953362 0.08272430806176027 0.07777552771784818 406.474855457158 -2.609033685295501 0.35594475558199956 LHS(ph)SNPNLCADIEFQTPPSHLTDPLESSTDYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHSSNPNLCADIEFQTPPSHLTDPLESSTDYTK 33 0 Q9BZF3-2;Q9BZF3;Q9BZF3-3;Q9BZF3-5;Q9BZF3-6;Q9BZF3-4 Q9BZF3-2 OSBPL6 Oxysterol-binding protein-related protein 6 1 LHS(0.5)S(0.5)NPNLCADIEFQTPPSHLTDPLESSTDYTK 84.516 0.0007282 122330000.0 12008.0 11504.0 12431.0 12439.0 10041.0 15795.0 13507.0 10189.0 18189.0 15553.0 True False 11943.350262214226 11886.903685685142 14181.176747811023 14013.776124600592 11319.661832330263 14703.128827430635 12853.614808249271 10949.354918693654 13706.564670112966 14560.394224406782 0.8202628361664995 0.8163861158209428 0.9739555488161098 0.9624585645565884 0.7774282521386503 1.0098029353343054 0.882779312850161 0.7519957735993066 0.9413594480249313 1.0 13.82976179675482 -2.821468708780494 1.3916787349008284 2.7176856475491955 0.8764844350985196 0.14779588368363072 0.08425907737294949 854064.9181554817 25689.10830140639 4617625.654214933 0.0241549395562728 0.0015084512915899617 2.821468708780494 -1.841201212450676 LHSEGDQLLAAEHPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHSEGDQLLAAEHPGR 16 0 O60437;K7EKI8 O60437 PPL Periplakin 0 ; 180.64 1.4077999999999998e-09 772360000.0 172005.0 225100.0 196562.0 207377.0 205191.0 202572.0 201185.0 127063.0 245672.0 177066.0 False True 171078.94419155206 232592.31742417664 224236.22105246826 233630.90693715733 231320.85758765813 188568.67444319587 191452.91294866588 136545.08627284045 185129.42743614223 165765.49628617064 1.0320540041469697 1.4031407176716617 1.3527315760896115 1.4094061319843465 1.3954704855364801 1.1375628744697193 1.154962385043927 0.8237244138980208 1.11681520933972 1.0 17.338784218803053 2.2868587978162895 1.9371247575259833 0.9711848699980323 1.3263664433166962 0.5310470375507914 0.13105606580827966 0.229538798781322 1.7503567728836973 0.06072488324892793 0.04126416547885726 193.5792477327654 -2.2868587978162895 0.35518157331866385 LHSELK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHSELK 6 0 D6RBP0;A0A494C0G8;Q96NL6-2;Q96NL6 D6RBP0 SCLT1 Sodium channel and clathrin linker 1 0 122.15 0.019343 140350000.0 292680.0 281770.0 290960.0 286080.0 263430.0 299800.0 303960.0 236990.0 427540.0 330620.0 False True 291104.24339980463 291148.5441164383 331924.6389303434 322297.6986675571 296976.2490280612 279075.5316532895 289256.29356003925 254675.39721083627 322178.4957424872 309519.54854197695 0.9405035797289073 0.9406467070914354 1.0723866731323042 1.0412838225752554 0.9594749359999968 0.9016410529412534 0.9345331980568278 0.8228087641330262 1.0408987001310304 1.0 18.239671004050642 2.9991316302114086 6.217531980574655 0.9207241105257306 1.000143587152608 0.11498883564215001 0.06699806900870577 0.22648085812454696 38.59731564471003 0.020369432576352504 0.023288829345395105 998.0025023287127 -2.9991316302114086 0.07941947662687754 LHSFESHKDEIFQVQWSPHNETILASSGTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LHSFESHKDEIFQVQWSPHNETILASSGTDR 31 1 Q09028-3;Q09028;Q09028-2;Q09028-4;H0YF10;H0YCT5;H0YDK2;H0YEU5 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 90.518 0.00018226 885040000.0 456670.0 507200.0 543290.0 474170.0 441140.0 613400.0 633750.0 41323.0 622100.0 327080.0 False True 454211.3394608066 524081.84539112507 619780.5096386654 534199.8733822552 497316.5641583672 570997.1017882848 603093.0913398959 44406.73209394224 468791.7907129189 306205.4743727238 1.4833547322799494 1.7115364983749268 2.0240673714547874 1.7445797612749694 1.6241269532399558 1.8647514482162642 1.9695699189420444 0.14502265900017466 1.5309712919837923 1.0 18.224140550154267 1.7581100837150287 24.999999998723343 0.8230360800127234 1.7782710869602878 0.5720415109450729 0.3482823183843161 5.1950598042476575 6649.6781290109375 0.14969114614592507 0.08301261604025016 57.29412400776159 -1.7581100837150287 0.9552350069475644 LHSLLGDYYQAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHSLLGDYYQAIK 13 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ; 158.58 4.7035e-05 1409450000.0 766020.0 895100.0 821480.0 761230.0 683960.0 881110.0 900350.0 533060.0 1087990.0 858370.0 False True 761895.8334328234 924892.8624006235 937137.2435678382 857601.6399493306 771058.2518514685 820200.9396098397 856796.6308289948 572839.6440238338 819869.4428190769 803588.0917124702 0.9481173766639581 1.15095391773371 1.166191053890272 1.0672154662244384 0.959519260929216 1.0206733375826502 1.066213697869932 0.7128523306052177 1.020260816797211 1.0 19.61609665952014 2.5102814927339514 1.0912744133111387 0.8985368735834641 1.086322256773147 0.1877868807690789 0.10877518489730467 0.6095754161858639 1.4713394954139 0.0652969442689488 0.04789328736706999 323.8034656967368 -2.5102814927339514 0.18778538318968285 LHSYS(ph)SPSTK ddPTM_BT-474_Trastuzumab_2h_R1 3 LHSYSSPSTK 10 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LHSYS(0.319)S(0.319)PS(0.304)T(0.059)K;LHSYS(0.829)S(0.143)PS(0.028)TK;LHSYS(0.736)S(0.264)PSTK 239.16 3.2941e-12 2816650000.0 2461260.0 2341160.0 2118110.0 2021700.0 1993160.0 2623590.0 2626480.0 1625540.0 3563280.0 2541040.0 True False 2448008.8496316904 2419084.095338894 2416321.477057841 2277647.0127104293 2246977.111615115 2442227.398566554 2499427.128272044 1746846.0491248674 2685157.389505751 2378868.6517062047 1.0290643192409534 1.0169052812578978 1.015743965235228 0.9574496730102455 0.9445570313449241 1.0266339828451252 1.0506789126332683 0.7343179909794392 1.128753950992572 1.0 21.18184418544895 3.9751031404758073 0.6650091142120014 0.9503142606126931 1.0480918695666004 0.0 0.09829187366687955 4.413049147984344 2.782403008181116 0.050510477879104836 0.28638005416731716 9442.851076663275 -3.9751031404758073 0.0977776089539073 LHSYSS(ph)PSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHSYSSPSTK 10 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LHSYS(0.487)S(0.513)PSTK 110.31 0.0012261 1687400000.0 1656100.0 1577800.0 1457000.0 1340600.0 1323600.0 1876600.0 1715300.0 1109200.0 2491600.0 1555600.0 True False 1647183.7416100057 1630316.1191997575 1662132.9355289757 1510319.8225451848 1492152.6144081596 1746875.0590412356 1632324.3859176708 1191974.1364034726 1877578.565729478 1456320.2761838357 1.1310587159620626 1.1194763582306655 1.1413237614767369 1.03707944416104 1.0246047101110338 1.1995129695088598 1.1208553589565058 0.8184835134802492 1.2892621193529723 1.0 20.473896239455456 7.999999999463159 0.14974286151646427 0.996825178782776 1.5297389302803774 0.02199888348931911 0.11978175920549049 191.75299441359405 1.8825916980272013 0.4235219693223645 22.21523567092802 99999999.87638783 -7.999999999463159 0.5329137514976015 LHTDDDLNWLDHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LHTDDDLNWLDHSR 14 0 Q9Y4G6 Q9Y4G6 TLN2 Talin-2 0 ;;; 203.85 8.3621e-09 204700000.0 98551.0 133459.0 113397.0 133698.0 133981.0 125673.0 123240.0 59719.0 122958.0 106240.0 False True 98020.41236604552 137901.10213733098 129362.31193560679 150624.1530916351 151042.68618239617 116985.52131242111 117278.41037748134 64175.535026937505 92656.6484527874 99459.67224335979 0.9855292115402043 1.3865026802009963 1.3006508971704698 1.5144243862284714 1.5186324544969552 1.1762106055022858 1.179155407736739 0.6452417706536535 0.9316001788752468 1.0 16.601824056480808 1.9989435429263458 2.965301356067234 0.8288832004207983 1.3351334260288314 0.5711171537446267 0.17314274243142494 0.1677759348310935 2.8530788633108766 0.08449518176808408 0.04931772198755202 99.75703740215027 -1.9989435429263458 0.5062502256080331 LHTDDELNWLDHGR ddPTM_BT-474_Trastuzumab_2h_R1 6 LHTDDELNWLDHGR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 ;;;;; 277.52 2.2256e-33 1555256000.0 703970.0 810928.0 713054.0 736544.0 721378.0 755685.0 709721.0 280191.0 817415.0 607731.0 False True 700179.9037384206 837919.2482636721 813445.8052235252 829790.3948804428 813241.2123576076 703446.2746411478 675389.083832493 301100.27520106913 615974.0260498321 568945.0872753137 1.230663414445834 1.4727594402413766 1.4297439654837851 1.458471851570634 1.429384365110228 1.2364045149066358 1.18709010577267 0.5292255473072854 1.08265989078092 1.0 19.11792988946673 2.021754627688294 3.421478226653457 0.8227509816305105 1.387648844352083 0.6547687193716352 0.16117102696340466 0.12191753121357242 2.92906530066235 0.07067374551608573 0.0441730138483612 105.13676930934521 -2.021754627688294 0.5648978627215724 LHTGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHTGEK 6 0 A6NHJ4;Q05481;Q8NCK3;Q05481-2;Q8NB50;Q96N58;A0A087WXA8;G3V1M0;J3KR62;Q2M218;Q2M218-2;Q9H963;Q9Y5A6;Q96NL3;Q8NB50-3;Q8N782;Q8NCK3-2;Q8TAF7-2;A0A087WV02;A0A087WV78;A0A087WVP9;Q8TAQ5;Q6PK81-2;Q8TAF7;Q86UE3;Q2VY69;O43309;Q5TEC3;Q8N823;Q9UK13;Q8NEP9-4;Q8NEP9;Q8N823-2;Q6ZNG1;O75290;O75290-3;M0QY24;Q9UKT9-14;Q6PK81;Q12901;Q12901-2;Q3MJ62;Q9UIE0;Q6ZMY9;Q9Y2G7;Q8N141;Q9HCL3;Q8TAQ5-2;Q8NEP9-2;Q7RTV3-2;Q5T5D7;Q9H7X3;Q13106;A0A3B3IT03;C9K0H3;B4DRP8;A0A0C4DG08;H0YCN3;A0A087WYH1;Q0VGE8;Q8N4W9-2;Q8N4W9;Q9P0L1;Q9NYT6;P10075;Q9UKT9-9;Q9UKT9-6;Q9UKT9-8;Q9UKT9-4;Q9UKT9-3;Q9UKT9-7;Q9UKT9;Q8N859;A0A0M3HEQ9;Q7RTV3;Q9H9D4;C9JZC2;Q6ZSS3;Q9C0G0;Q9C0G0-2 A6NHJ4;Q0VGE8;Q8N4W9-2;Q9P0L1;Q9NYT6;P10075;Q9UKT9-9;Q8N859;Q7RTV3;Q9H9D4;C9JZC2;Q9C0G0 ZNF860;ZNF91;ZNF485;ZFP62;ZNF578;ZNF630;ZSCAN21;ZNF525;ZNF702P;ZNF599;ZNF461;ZNF407;ZNF420;ZNF773;ZNF546;ZNF284;ZSCAN12;ZNF697;ZNF611;ZNF221;ZNF555;ZNF600;ZNF780A;IKZF3;ZNF155;ZSCAN23;ZNF230;ZNF517;ZFP30;ZFP82;ZFP14;ZNF367;ZNF684;ZNF696;ZNF154;ZNF28;ZNF816;ZNF808;ZKSCAN7;ZNF226;GLI4;ZNF713;ZNF408;ZNF621 Zinc finger protein 860;Zinc finger protein 91;Zinc finger protein 485;Zinc finger protein 62 homolog;Zinc finger protein 578;Zinc finger protein 630;Putative zinc finger protein 702;Zinc finger and SCAN domain-containing protein 21;Zinc finger protein 599;Zinc finger protein 525;Zinc finger protein 461;Zinc finger protein 420;Zinc finger protein 773;Zinc finger protein 546;Zinc finger protein 284;Zinc finger and SCAN domain-containing protein 12;Zinc finger protein 697;Zinc finger protein 611;Zinc finger protein 221;Zinc finger protein 555;Zinc finger protein 600;Zinc finger protein 780A;Zinc finger protein Aiolos;Zinc finger protein 155;Zinc finger and SCAN domain-containing protein 23;Zinc finger protein 230;Zinc finger protein 517;Zinc finger protein 30 homolog;Zinc finger protein 82 homolog;Zinc finger protein 14 homolog;Zinc finger protein 367;Zinc finger protein 684;Zinc finger protein 696;Zinc finger protein 154;Zinc finger protein 816;Zinc finger protein 808;Zinc finger protein with KRAB and SCAN domains 7;Zinc finger protein 226;Zinc finger protein GLI4;Zinc finger protein 713;Zinc finger protein 408;Zinc finger protein 621;Zinc finger protein 407 0 84.064 0.056276 91100000.0 139560.0 130070.0 113720.0 99310.0 97113.0 93798.0 129750.0 84381.0 156330.0 128090.0 False True 138808.62446657356 134399.30132102463 129730.78752804035 111882.63581751622 109479.7649161527 87313.965036742 123473.4968068663 90677.93869803597 117804.56621467687 119915.18653663383 1.1575566738093497 1.1207863257583803 1.0818545279784715 0.9330147335703498 0.9129766468962366 0.7281310029073571 1.0296735582289689 0.7561839439772214 0.9823990573428149 1.0 16.87165485340309 3.7623816637626297 1.868568785019156 0.8811433992386705 1.143343386039978 0.5283361305984201 0.09312793113199802 0.238277627684272 1.6105745199747088 0.025114384628430613 0.055399222242780335 5786.0430919618375 -3.7623816637626297 0.2621999868013075 LHTGEKPYK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHTGEKPYK 9 1 A6NHJ4;Q05481;Q8NCK3;Q05481-2;Q8NB50;Q96N58;G3V1M0;J3KR62;Q9H963;Q9Y5A6;Q96NL3;Q8NB50-3;Q8N782;Q8NCK3-2;Q0VGE8;Q8N4W9-2;Q8N4W9;Q9P0L1 A6NHJ4;Q0VGE8;Q8N4W9-2;Q9P0L1 ZNF860;ZNF91;ZNF485;ZFP62;ZNF578;ZSCAN21;ZNF525;ZNF702P;ZNF599;ZNF816;ZNF808;ZKSCAN7 Zinc finger protein 860;Zinc finger protein 91;Zinc finger protein 485;Zinc finger protein 62 homolog;Zinc finger protein 578;Putative zinc finger protein 702;Zinc finger and SCAN domain-containing protein 21;Zinc finger protein 599;Zinc finger protein 525;Zinc finger protein 816;Zinc finger protein 808;Zinc finger protein with KRAB and SCAN domains 7 0 ; 132.01 0.0001905 1908410000.0 2189870.0 2142640.0 2188130.0 1946110.0 1877470.0 2497890.0 2383030.0 1595880.0 3203400.0 2304850.0 False True 2178079.9832374295 2213956.4771467703 2496199.684433091 2192487.326460846 2116554.6758634667 2325216.743700584 2267753.7348413593 1714972.6693144375 2413964.993360814 2157752.4997186363 1.0094206742995055 1.0260474625497886 1.1568517171263095 1.0160976881021984 0.9809070670243498 1.0776104970351255 1.050979542434578 0.7947958209007123 1.1187404457534342 1.0 21.04109796246054 LHTLEEEKEELAQYQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHTLEEEKEELAQYQK 16 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 235.22 6.4339e-20 455310000.0 1143720.0 896220.0 880840.0 754190.0 778890.0 1215770.0 1116940.0 730030.0 1665910.0 1041520.0 False True 1137562.3385992374 926050.1409235704 1004854.6156014703 849670.3766711566 878077.0246572763 1131726.6815147412 1062909.3450748452 784508.5456172269 1255368.802550326 975049.3019098653 1.1666716097032752 0.9497469913671868 1.0305680068005014 0.8714127326760561 0.9005462830826648 1.160686623023047 1.0901083083623415 0.8045834647341225 1.2874926427734357 1.0 19.89511564286071 2.7737899955087015 24.985583986900522 1.037513167082113 0.9782536189429176 0.06320413534497393 0.13877873024725088 2436.22111573075 1727825.7218428517 0.04306971450640134 0.045680112336371204 594.0048562025277 -2.7737899955087015 -0.05925954813919532 LHTVQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHTVQPK 7 0 A2A3N6;Q5VWC4;P55036-2;P55036;A6PVX3 A2A3N6;Q5VWC4 PIPSL;PSMD4 Putative PIP5K1A and PSMD4-like protein;26S proteasome non-ATPase regulatory subunit 4 0 73.039 0.064166 0.0 344300.0 360380.0 299260.0 301940.0 366840.0 386840.0 440900.0 350610.0 594120.0 447300.0 False True 342446.32705532643 372375.0304456892 341393.20678544993 340165.5730413944 413554.89956897014 360098.66132341034 419571.9825984383 376774.29856150516 447707.08680012764 418752.93104720314 0.8177765495251538 0.8892475797470035 0.8152616530508942 0.812330010898598 0.9875868773855888 0.8599310825667246 1.0019559303123846 0.8997532211160427 1.069143768571403 1.0 18.675739763025845 2.4797819229803784 0.5427900056950631 1.012783720781362 0.8267702218515618 0.5491452911951733 0.059181282277997904 0.7158093894710266 0.4360587549404633 0.05066088721904698 0.04925657820844722 301.8435659813636 -2.4797819229803784 -0.18601349892980013 LHVAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHVAVK 6 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6;Q96SI9;Q96SI9-2 Q12906;Q12906-7;Q96SI9 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein 0 ; 89.775 0.049783 2701200000.0 7402300.0 8491300.0 7811500.0 7325800.0 7396000.0 8982100.0 8292300.0 5907000.0 11282700.0 8484900.0 False True 7362446.839272851 8773927.787400752 8911291.301224833 8253245.528868796 8337836.760473526 8361188.568589105 7891169.769337784 6347810.33513823 8502229.76543426 7943386.417711631 0.9268649983911849 1.1045575937030125 1.1218504089584553 1.0390084398344592 1.0496577054192373 1.0525974853679392 0.9934263995696573 0.7991315040376616 1.0703532874186452 1.0 22.92132275635051 1.9940777131767111 10.517255496119086 0.9246984609356154 1.0519173862976954 0.18105833773361457 0.08131732697309722 0.20712503024950668 320.0175799351547 0.031097393587817067 0.02164140651581308 98.64559874593522 -1.9940777131767111 0.12721892536208002 LHVENEDKK ddPTM_BT-474_Trastuzumab_2h_R1 5 LHVENEDKK 9 1 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 0 ;;;; 197.06 1.8578e-05 3630840000.0 8918580.0 6955770.0 6179170.0 5741390.0 5721950.0 8375820.0 8285640.0 6499650.0 13166860.0 7562770.0 False True 8870563.35622738 7187288.59959825 7049143.42569154 6468249.385322023 6450606.415845241 7796819.2779594865 7884831.938981452 6984686.887553953 9922063.779884743 7080107.543786847 1.2528853977665562 1.0151383372566791 0.9956266034232094 0.9135806688414274 0.9110887618516438 1.1012289332810474 1.113659911267985 0.986522710899126 1.4014001508482532 1.0 22.755339843715724 1.293905732831696 24.99999975392666 1.2007137450926788 1.029878965026128 0.19866314556652442 0.13164727436889181 110.05124344365257 49710.925179832 0.08393631573468577 0.030650881123871397 19.674591902516422 -1.293905732831696 -0.17083478006655084 LHVGEESK ddPTM_BT-474_Trastuzumab_2h_R1 4 LHVGEESK 8 0 P78356;P78356-2 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ;;; 143.01 0.0006082999999999999 1607710000.0 3191120.0 2840440.0 2730930.0 2653150.0 2443480.0 3270540.0 3183850.0 3004050.0 4171430.0 3196280.0 False True 3173939.3644867623 2934982.3283177633 3115421.20633091 2989038.5179664004 2754642.694359358 3044455.2678230484 3029835.0120118754 3228227.4652568144 3143436.9707982456 2992290.673927018 1.0607055631802482 0.980848001797217 1.0411492551431503 0.9989131550657979 0.9205799150335299 1.0174329968510616 1.0125470223905704 1.0788482193209386 1.050511903201191 1.0 21.512818896108598 1.9238057247972462 6.368326208485456 1.0509244027641718 1.0011582698314234 0.1593885910693067 0.03962059167002159 0.3471844339699549 23.505038741714426 0.017194595979765474 0.010569782010632548 83.9084550509486 -1.9238057247972462 -0.04976613293274834 LHVGNIS(ph)PTCTNK ddPTM_BT-474_Trastuzumab_2h_R1 3 LHVGNISPTCTNK 13 0 Q9BWF3;E9PB51;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2 Q9BWF3 RBM4 RNA-binding protein 4 1 LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(0.995)PT(0.005)CTNK 272.38 4.3118999999999987e-32 3375240000.0 3479370.0 3463720.0 3030180.0 3034570.0 2964550.0 3694070.0 3559090.0 1505200.0 4145840.0 3001850.0 True False 3460637.4585143495 3579007.826337042 3456803.005203283 3418746.250858527 3342067.870235504 3438707.6358054276 3386923.2196558756 1617525.6672507287 3124153.2834098125 2810269.362986918 1.2314255366738875 1.2735461851005854 1.2300610933356193 1.2165190625089704 1.1892339980831446 1.2236220773337432 1.2051952258612164 0.5755767360077997 1.1116917561558157 1.0 21.422276988034024 1.856166734169547 9.945184552590133 0.8548132666684746 1.2257532989343698 0.5677948276685834 0.1299559152526692 0.22294579161392472 17.603478151044964 0.05080157368247567 0.03222907780436983 71.80699194842424 -1.856166734169547 0.3709400322658952 LHVNDASHNHHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHVNDASHNHHSK 13 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 0 38.189 0.0869 9661300.0 16293.0 18462.0 17214.0 17503.0 19425.0 13063.0 22267.0 16042.0 24820.0 16859.0 False True 16205.28029832248 19076.496509485325 19637.58157322975 19718.87800537697 21898.658609004597 12159.985556994394 21189.86014179954 17239.135499625434 18703.443570960673 15783.044186283933 1.0267525140939215 1.2086702846630517 1.2442201479924613 1.2493710194712264 1.387480029235131 0.7704461454629827 1.3425711726901417 1.0922566835748264 1.1850339738144229 1.0 13.946087874437348 LHVNWVVSELTLGQIWDVDLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LHVNWVVSELTLGQIWDVDLQK 22 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 143.15 1.0964e-07 78713000.0 85106.0 77300.0 72679.0 68622.0 75492.0 94336.0 90110.0 63193.0 110463.0 94202.0 False True 84647.79875216544 79872.88377116331 82911.57146280742 77309.53816402785 85105.4587238597 87814.77436305778 85751.0350463716 67908.78254755205 83240.87377836544 88189.94770961026 0.9598350033145691 0.9056914744316078 0.9401476428562657 0.8766252863488573 0.9650244833355941 0.9957458490871561 0.9723447770797023 0.7700286065613788 0.943881654771573 1.0 16.42832659977683 LHYCVSCAIHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LHYCVSCAIHSK 12 0 P62854;Q5JNZ5 P62854 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 0 155.48 4.1852e-05 1213500000.0 752270.0 842580.0 892560.0 733310.0 668540.0 834670.0 885140.0 412550.0 1264300.0 727830.0 False True 748219.8619050545 870624.7659496333 1018224.6897294034 826146.9708120313 753674.606252969 776971.2275018378 842322.3966368374 443336.57588645257 952730.2057520383 681379.2662733868 1.0980960222010183 1.277738858582052 1.4943581939296426 1.2124627380143382 1.1061014673589664 1.140291855006485 1.2362019778554225 0.650645826532348 1.3982377405798236 1.0 19.378098522693403 2.713551241356797 1.123258943391907 1.0043136930579522 1.2837613352493924 0.13830180143784732 0.20403549742975227 0.7230815811438135 1.8977430512526725 0.10489273080136761 0.09502901576852607 517.0722624768581 -2.713551241356797 0.27944764219144025 LHYTPPLQS(ph)PIIDNDPLLGQSPWR ddPTM_BT-474_Trastuzumab_2h_R1 2 LHYTPPLQSPIIDNDPLLGQSPWR 24 0 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2 C9J5J4 LIN9 Protein lin-9 homolog 1 LHYTPPLQS(1)PIIDNDPLLGQSPWR;LHYT(0.001)PPLQS(0.999)PIIDNDPLLGQSPWR 237.28 1.2578e-37 356990000.0 104849.0 140535.0 130317.0 127768.0 124411.0 119972.0 128808.0 85047.0 128353.0 124264.0 True False 104284.5046338189 145212.62251979858 148664.50086433033 143943.41569965187 140254.00340823032 111678.61802371069 122577.06494565582 91393.63899991557 96722.12299208359 116333.36513223712 0.8964281615620576 1.2482456976528975 1.2779179962287013 1.2373356133558948 1.2056214762532005 0.9599878581416833 1.0536707573645914 0.7856184586083936 0.831422033413533 1.0 16.827905404501138 2.3836328756130807 1.5466485472290292 0.8679081365972748 1.1860545925005792 0.49220497568343535 0.1239249937701699 0.2936588807366499 1.4197403389948537 0.06216111093534994 0.04334326963977113 241.89833305862663 -2.3836328756130807 0.31814645590330437 LIAEQPPHLTPGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIAEQPPHLTPGIR 14 0 C9JBI3;P78330 C9JBI3 PSPH Phosphoserine phosphatase 0 64.675 0.060296 282090000.0 93205.0 131800.0 127300.0 149340.0 134080.0 127700.0 129790.0 126310.0 127560.0 136320.0 False True 92703.19463604903 136186.88332521738 145222.7334885644 168246.4286878249 151154.29324557737 118872.39957346571 123511.56185405128 135735.89358918375 96124.54721642807 127619.9408905763 0.7264005451588045 1.0671285566727111 1.1379313646061087 1.3183396537699583 1.1844096791674577 0.9314563127355552 0.9678077030293595 1.0635947066106717 0.7532094635496426 1.0 16.961494245359724 2.7239180214014906 24.409074230477547 0.9588279306722565 1.1014460561435913 0.1631159460927144 0.15902006898137827 1168.6912407195557 1948194.676584436 0.05356635664833666 0.05071583447063466 529.5634726262147 -2.7239180214014906 0.1426181254713348 LIALSIDSVEDHLAWSK ddPTM_BT-474_Trastuzumab_2h_R1 4 LIALSIDSVEDHLAWSK 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;;; 279.44 7.1412e-36 9659002000.0 9168976.0 11307910.0 10212966.0 10268975.0 10083398.0 12203900.0 11808250.0 10556831.0 14340020.0 12444330.0 False True 9119611.251984999 11684286.948574053 11650862.84010817 11569026.182098258 11367458.966317618 11360273.117890513 11237039.83560445 11344635.335721632 10806114.217423357 11650122.205273062 0.7827910378362635 1.0029325652297043 1.000063573138724 0.99303904098636 0.9757373155427069 0.97512051098903 0.9645426578030535 0.9737782261706096 0.9275537223577199 1.0 23.473841752483086 4.742957139117297 24.9795042071542 0.9783389082860041 0.7827909592682794 0.8836697037763444 0.02137640251808039 139.42860464284695 792156.051961618 0.005184997181694657 0.04096557649976304 55329.55013291005 -4.742957139117297 -0.19554794901772476 LIAQACVSIFPDSGHFNVDNIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIAQACVSIFPDSGHFNVDNIR 22 0 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 235.76 1.7894e-30 3007400000.0 760730.0 1005530.0 1027440.0 1091480.0 937590.0 915710.0 920190.0 893050.0 921430.0 983290.0 False True 756634.3142050491 1038998.4581942802 1172094.6213314258 1229661.2560880359 1056986.5289686797 852409.1230494794 875676.8942328335 959693.9258160128 694355.9230294243 920535.5903630774 0.8219500931046214 1.1286890687023614 1.2732746388101395 1.3358106617073147 1.1482299435612082 0.9259925764665682 0.9512689171392594 1.0425386436579716 0.7542955756393478 1.0 19.81211397553151 2.74567875064167 18.768706435932984 0.9475297724008525 1.1589803365367792 0.33395231333562536 0.14441321679603294 22.625172563322185 59654.8175363147 0.04636818843819974 0.04788716801029364 556.773748811677 -2.74567875064167 0.21145056413592678 LICCDILDVLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 LICCDILDVLDK 12 0 P62258;P62258-2;K7EIT4 P62258 YWHAE 14-3-3 protein epsilon 0 ;; 220.93 6.606100000000001e-11 485220000.0 887272.0 869542.8 697029.0 696207.0 692783.0 880968.0 806986.0 811199.0 1169653.0 883233.0 False True 882495.026137187 898485.0064482784 795164.6245153229 784346.7348162872 781004.8086034505 820068.7557356065 767949.0041941092 871734.7885650578 881407.6906972146 826864.313766184 1.0672791308620122 1.0866172254500597 0.9616627677321372 0.9485797388494871 0.9445380524963599 0.9917815318457448 0.9287485158190846 1.0542658257852473 1.065964120137919 1.0 19.657291080838068 -0.4218148023003203 6.645881583253268 1.0000058858215075 1.0030632605972833 0.0 0.05607207639626139 0.0 0.0 0.057542164078736635 0.013562818141407883 0.37860399971279823 0.4218148023003203 0.003057374775775834 LIDAEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIDAEEEKR 9 1 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 0 136.63 0.00030019 223770000.0 243050.0 206340.0 197340.0 179820.0 170940.0 245760.0 253570.0 231490.0 351370.0 260770.0 False True 241741.44580539363 213207.9021648359 225123.7566899707 202585.19356264002 192708.19575924065 228771.18965681276 241303.8503685325 248764.95928240215 264779.57161677897 244127.43534357063 0.9902264588377004 0.8733467496792386 0.9221567267650387 0.8298337844639768 0.7893754157046481 0.9370974193656424 0.9884339710894665 1.0189963243266982 1.0845957204447085 1.0 17.89727491052253 2.2306050804391124 2.3354478109454964 1.0316954349936165 0.8795094806271205 0.6027880742452153 0.05461547839934096 0.20643610091189626 2.2935639801110517 0.025401410847373542 0.01734827000605507 170.06113781034387 -2.2306050804391124 -0.15218595436649596 LIDDYGVEEEPAELPEGTSLTVDNKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIDDYGVEEEPAELPEGTSLTVDNKR 26 1 Q00577 Q00577 PURA Transcriptional activator protein Pur-alpha 0 ; 267.57 3.9333e-53 236990000.0 169408.0 182003.0 169657.0 153636.0 167420.0 196789.0 194740.0 193859.0 234830.0 179229.0 False True 168495.9261509983 188060.8598318631 193543.23091492048 173086.30184734587 188739.94462391516 183185.43962147835 185319.68222095657 208325.74297605592 176959.2930607856 167790.4517743333 1.0042044965562986 1.1208078757949356 1.153481791533781 1.031562285082438 1.1248550953170893 1.0917512747855893 1.1044709651905513 1.2415828241301823 1.054644595026085 1.0 17.35630109504319 1.9828782670020801 24.57013557759018 1.137445472214691 1.091954894112155 0.0 0.07323916234837405 1627.0831462256908 2334904.965312403 0.028563045925917293 0.018923457149063214 96.13427756708548 -1.9828782670020801 -0.04549057810253587 LIDFLECGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LIDFLECGK 9 0 P17844;P17844-2;J3KTA4;J3QSF1;J3KRZ1 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 131.06 0.0026725 0.0 231580.0 258390.0 230540.0 214760.0 227150.0 285650.0 267500.0 249470.0 338040.0 257340.0 False True 230333.1990109565 266990.35494994634 262998.02811039815 241948.59398016124 256076.20607646834 265903.6878477724 254560.00305076482 268086.71818299167 254734.57150393038 240916.34088014142 0.9560712991467435 1.1082284994639573 1.0916570754378285 1.0042846952442026 1.062925848620078 1.1037179415740108 1.0566323650806704 1.1127793042331147 1.057356967042197 1.0 17.878172726490597 3.0033825021471308 24.987582234882982 1.076250019015767 1.0467388032599858 0.0345747531147077 0.049463443178888365 291.7408378390499 2155158.3609134704 0.013789516371603956 0.016408902213991997 1007.8189082757204 -3.0033825021471308 -0.029511215755781084 LIDHLHNCPSFHLSSIEVLILDEADR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIDHLHNCPSFHLSSIEVLILDEADR 26 0 B7Z6D5;Q96GQ7 B7Z6D5 DDX27 Probable ATP-dependent RNA helicase DDX27 0 91.114 0.0035232 143830000.0 30161.0 79976.0 99786.0 115730.0 103780.0 103280.0 95737.0 17082.0 64132.0 61578.0 False True 29998.61652720214 82637.95281348712 113835.00144453967 130381.40613393577 116995.76784774775 96140.49669496906 91105.8355591441 18356.745580638435 48327.527924772374 57648.03932042183 0.5203753133816491 1.4334911262838494 1.9746552144092366 2.261679801618997 2.0294839031290692 1.6677149444857402 1.5803804714459708 0.31842792568550643 0.8383204094098711 1.0 15.814983920456735 1.8072192249691765 7.302036956793684 0.6716126031352464 1.687013628896993 0.44114812260756364 0.4715715366632517 0.22512085111198998 20.193097108584862 0.22114933052674893 0.13244545387166787 64.15333307198121 -1.8072192249691765 1.0154010257617467 LIDLES(ph)PTPESQK ddPTM_BT-474_Trastuzumab_2h_R1 7 LIDLESPTPESQK 13 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 LIDLES(0.992)PT(0.008)PESQK;LIDLES(0.5)PT(0.5)PESQK;LIDLES(0.999)PT(0.001)PESQK;LIDLES(0.905)PT(0.095)PESQK;LIDLES(0.896)PT(0.104)PESQK;LIDLES(0.638)PT(0.362)PESQK;LIDLES(0.5)PT(0.5)PESQK 350.18 6.545099999999999e-76 3820920000.0 5062140.0 4552280.0 4093520.0 3891880.0 3924710.0 5108790.0 5017640.0 4575430.0 6348840.0 4973600.0 True False 5034886.000696624 4703799.88788863 4669852.034486318 4384591.60895655 4424498.554921307 4755631.3720980985 4774917.583953795 4916871.82016277 4784253.452097419 4656180.589886812 1.0813339181114145 1.0102271157835345 1.0029361929451792 0.9416712956709302 0.9502420427015403 1.0213588756474121 1.0255009426234196 1.0559882129233085 1.0275059911741353 1.0 22.150715583558693 2.493090532316715 23.1638070951702 1.032910410372944 0.9942833582859196 0.11862329146308559 0.03783428282480254 488.8892065578655 709148.1381489808 0.013282454515757575 0.012168614357106635 311.23650680138104 -2.493090532316715 -0.03862705208702444 LIDLHSPSEIVK ddPTM_BT-474_Trastuzumab_2h_R1 4 LIDLHSPSEIVK 12 0 P60866;P60866-2;G3XAN0 P60866 RPS20 40S ribosomal protein S20 0 ;;; 161.93 6.2768e-05 6207410000.0 5677210.0 5927400.0 5818700.0 5212550.0 4671660.0 5848320.0 6303910.0 5222770.0 8413820.0 6082320.0 False True 5646644.532157325 6124689.925811037 6637922.382952936 5872458.295545209 5266568.209901802 5444039.403864466 5998965.790025224 5612519.618088683 6340346.800411778 5694141.130263867 0.9916586896917428 1.0756125964737406 1.165746024044426 1.031315901942367 0.9249100240790394 0.9560773572909649 1.0535330355865682 0.9856657026392668 1.1134860649507585 1.0 22.441046820291348 3.486534743756028 24.96360633680772 1.002407651452928 1.0809772086377145 0.21060350166276676 0.06211522828193275 623.1216309055826 1652453.9361561965 0.01705596968109552 0.024413063233749147 3065.735929883979 -3.486534743756028 0.07856955718478642 LIDLHTNVATAVLEHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LIDLHTNVATAVLEHIK 17 0 Q8WVM8;Q8WVM8-2;Q8WVM8-3 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 0 ; 256.96 2.3724000000000003e-27 333030000.0 449170.0 534130.0 465850.0 437040.0 413350.0 493430.0 525990.0 438790.0 665040.0 507080.0 False True 446751.7186274785 551908.1941615969 531437.6307592129 492369.21918927936 465987.67238260247 459320.34550928144 500545.85422307224 471534.73793047277 501149.80307943915 474717.72026697017 0.9410891979685018 1.1626028913587145 1.1194813424288117 1.0371831473077988 0.9816100231534266 0.9675651990639204 1.0544073516817045 0.9932949999534305 1.0556795790087723 1.0 18.856710378141656 3.508333854322631 6.708221007347906 1.008617241887959 1.0827699078125907 0.19500761756477059 0.059020431616221745 0.2743972770457215 41.87351065188398 0.01530908144600313 0.02311299692280134 3223.545868987298 -3.508333854322631 0.07415266592463166 LIDVLENR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIDVLENR 8 0 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 ; 150.4 0.0011395 154433000.0 93075.0 118232.0 101984.0 110980.0 99097.0 109699.0 97770.0 90482.0 114124.0 108411.0 False True 92573.89454160456 122167.28064724663 116342.46073918123 125030.05662096415 111716.41555606337 102115.76633366972 93040.49158232994 97234.22629828623 85999.66938325202 101492.1171646734 0.912128913336207 1.203712012914533 1.1463201674117487 1.2319188929530347 1.1007398276538147 1.0061448040145269 0.9167262855633359 0.9580470780851025 0.847353191417965 1.0 16.631008152890896 2.607920345801894 2.501245836962626 0.9304637869592904 1.1336268627589312 0.5053560568804465 0.08788804579936633 0.2245977414880914 2.7580385754263825 0.03103147125945886 0.028481856766106678 405.434167717223 -2.607920345801894 0.20316307579964077 LIDVNHYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LIDVNHYAK 9 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 132.01 0.00031705 961180000.0 3634900.0 4207500.0 3761000.0 3631500.0 3438500.0 4347800.0 4182400.0 3661000.0 5293200.0 4431900.0 False True 3615330.1022753515 4347544.094012539 4290516.108801967 4091247.527653913 3876372.5934137595 4047246.819620315 3980081.3336804374 3934202.4101813138 3988761.7852461375 4149052.347659515 0.8713628557409653 1.0478402607923212 1.0340954389795183 0.9860679463255724 0.9342790277400153 0.9754629444247362 0.959274793417732 0.948217106106314 0.9613669462368202 1.0 21.984350428807144 3.453062450687755 21.45357465204632 0.9600444033200317 0.9939915965655669 0.03506954232026338 0.047102088045014215 104.60044006968793 93271.6683886876 0.012567903924134226 0.017019383096177648 2838.327144928819 -3.453062450687755 0.03394719324553519 LIDWGLAEFYHPAQEYNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIDWGLAEFYHPAQEYNVR 19 0 P19784;H3BSA1 P19784 CSNK2A2 Casein kinase II subunit alpha 0 ; 175.39 2.6664e-12 497440000.0 215528.0 241955.0 255010.0 241210.0 245064.0 249140.0 244380.0 202376.0 294820.0 244540.0 False True 214367.62119541207 250008.32591011396 290913.19141334516 271747.1612681816 276271.44779187173 231917.5382124769 232558.40577774146 217478.3247645054 222165.5613856014 228933.24783877312 0.9363760974831452 1.092057742902346 1.2707336927234858 1.1870148343833407 1.2067773047383519 1.0130356355045707 1.0158349998228364 0.949963916633311 0.9704381669457733 1.0 17.804567474284877 2.600207823447521 4.859323075711341 0.9818420186792995 1.1455601156193098 0.44008728081109316 0.0840276792206873 0.2201453921764342 7.8057953577220935 0.02961258915293057 0.027702765896401284 398.29772283346466 -2.600207823447521 0.16371809694001027 LIDWGLAEFYHPGQEYNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIDWGLAEFYHPGQEYNVR 19 0 P68400;E7EU96;A0A2R8YD58;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2;A0A2R8Y4H0;A0A2R8Y4D6 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ; 182.34 2.946700000000001e-14 2429700000.0 664430.0 735600.0 759170.0 809170.0 685530.0 754300.0 841940.0 625550.0 849740.0 796990.0 False True 660852.7827051131 760084.0013204091 866054.5371760674 911610.8390339302 772828.1820453497 702157.0164312089 801212.1456768626 672231.7174785368 640332.9629326408 746125.4158625318 0.8857127349577788 1.018708095396725 1.1607358746450096 1.2217930386141516 1.035788576042473 0.9410710337745368 1.0738303891587042 0.9009634348153484 0.858210897684549 1.0 19.509058627216625 2.103906757647421 1.2640841359312913 0.9156459288672911 1.0688750535738076 0.22921469015733198 0.09918014573904871 0.6502114941881397 1.95452663729497 0.07252270832599259 0.03680031593971709 127.0301344197897 -2.103906757647421 0.1532291247065165 LIEDFLAR ddPTM_BT-474_Trastuzumab_2h_R1 5 LIEDFLAR 8 0 A6NKE1;A0A087WWM0;O43617;O43617-2 A6NKE1 TRAPPC3 Trafficking protein particle complex subunit 3 0 ;;;; 166.17 0.00074451 211258000.0 450048.0 550013.0 491748.0 531627.0 502628.0 526528.0 511134.0 460314.0 567148.0 519257.0 False True 447624.99157303304 568319.8502151201 560981.8440497607 598930.9236910561 566634.6964904389 490130.3586735934 486408.4956985028 494664.9681071296 427381.9747938441 486117.5737017158 0.9208163123263221 1.1690995778808113 1.1540044515938073 1.2320700918715668 1.165633022018926 1.0082547621994424 1.0005984601514644 1.0175829775918748 0.8791740885633726 1.0 18.890945764568308 2.652602927313564 4.7338471269283495 0.984137359471536 1.137590939984486 0.43279522653010294 0.0841698166111428 0.21871045619159912 8.567429699183373 0.027977085640280428 0.02639867884600615 449.368811964284 -2.652602927313564 0.15345358051294988 LIEDKPR ddPTM_BT-474_Trastuzumab_2h_R1 6 LIEDKPR 7 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;;;; 136.16 0.0027429000000000004 6055440000.0 8212200.0 8845620.0 7664320.0 7701590.0 8063420.0 9750470.0 9798520.0 9356290.0 12184610.0 9706520.0 False True 8167986.427661202 9140041.114409795 8743389.63653632 8676610.504338188 9090248.741365246 9076442.959037522 9324528.153618615 10054503.87007796 9181876.130909065 9087041.583430145 0.8988609056830109 1.0058324296739538 0.9621821971717991 0.9548333662475628 1.0003529375215967 0.9988336551235829 1.0261346410719103 1.106466144978575 1.0104362400686981 1.0 23.115379250145292 2.605892552485253 1.356895608179498 1.0515378926772811 0.9601916410481194 0.44129446092156444 0.0379162936549487 0.34187324975801114 1.2790729533022513 0.017800525791617016 0.014917810158414351 403.54554060600424 -2.605892552485253 -0.09134625162916177 LIEDTEDWRPR ddPTM_BT-474_Trastuzumab_2h_R1 6 LIEDTEDWRPR 11 1 Q96HC4;Q96HC4-4;Q96HC4-7;H0Y8Y3;H0YBI4;Q96HC4-3;Q96HC4-2;Q96HC4-6 Q96HC4;Q96HC4-6 PDLIM5 PDZ and LIM domain protein 5 0 ;;;;; 208.56 1.7478e-08 2136690000.0 1857521.0 2290100.0 2100115.0 2269410.0 2154418.0 2099076.0 2179931.0 1945543.0 2383214.0 2170508.0 False True 1847520.3133259837 2366324.5941053154 2395792.937473183 2556717.073312152 2428770.362064063 1953971.8168134086 2074479.4093848828 2090729.2979271745 1795902.843131487 2031984.3211746097 0.9092197681220322 1.1645388054655053 1.17904105484843 1.2582366146576442 1.1952702276069174 0.9616077232741121 1.0209130984759314 1.0289101525737199 0.8838172737934054 1.0 20.954457839617863 2.734780525166439 24.681775868410433 0.9882994267649827 1.1511519955713927 0.42605381975550793 0.09347753970117272 279.18756399368493 1822925.55633319 0.030433349995206433 0.02973067412741422 542.9758641455551 -2.734780525166439 0.16285256880640997 LIEEVHAVVTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIEEVHAVVTVR 12 0 M0R0N4;M0QYZ2;P53680;X6R390;P53680-2;M0QZ21 M0R0N4 AP2S1 AP-2 complex subunit sigma 0 128.31 0.0002542 200560000.0 119130.0 134890.0 130060.0 122290.0 132340.0 138560.0 152920.0 124510.0 137990.0 146290.0 False True 118488.61731658725 139379.7321072732 148371.31749821448 137771.90146132375 149192.71455936538 128981.67333515611 145522.67538887096 133801.56844896916 103984.2134712676 136953.64695482998 0.8651731439883973 1.0177146443806888 1.0833688682065565 1.0059746821255782 1.0893664964509642 0.9417907168087084 1.062568822551087 0.9769843404980633 0.7592657500063774 1.0 17.063328158688158 1.434009628810099 9.952870018670835 0.8753877164997084 1.0126718437016664 0.2737786117937302 0.08320856359883831 0.3456216093716341 72.93103741408461 0.04682116656538844 0.019151653268352678 27.16499496101717 -1.434009628810099 0.13728412720195804 LIEGLSHEVIVSAACGR ddPTM_BT-474_Trastuzumab_2h_R1 5 LIEGLSHEVIVSAACGR 17 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;;;; 254.56 4.838099999999999e-27 4323002000.0 1892280.0 2507700.0 2126617.0 2331486.0 2305314.0 2344548.0 2336990.0 2058544.0 2530738.0 2384125.0 False True 1882092.174732071 2591167.2785633397 2426026.188713671 2626651.8885473516 2598882.0732334047 2182474.915232345 2223940.865531239 2212163.006354629 1907071.530051807 2231968.101347896 0.8432433123015812 1.1609338309980872 1.0869448301024476 1.1768321809622209 1.164390329621614 0.9778253165510468 0.9964035167833228 0.9911266227410211 0.8544349396840025 1.0 21.089884978052183 2.642832102576806 7.188373687195914 0.9675074721271256 1.0954531307376565 0.28167324248026726 0.09727951462244457 0.3446311703851246 22.563565505815205 0.031088571501292857 0.029275834137671194 439.3717223250493 -2.642832102576806 0.12794565861053087 LIEIHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LIEIHGK 7 0 A0A0G2JP90;A0A087WW46;J3KN36;A0A0G2JN29;A0A087X117;Q5JPE7-3;Q5JPE7-2;Q15155;P69849;Q5JPE7 A0A0G2JP90 NOMO1;NOMO3;NOMO2 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 0 81.297 0.027584 299490000.0 444830.0 571280.0 542710.0 472020.0 544270.0 641420.0 602940.0 547810.0 746320.0 575800.0 False True 442435.08470525924 590294.7094539481 619118.8506801166 531777.6836026987 613579.5583589678 597080.1451402704 573773.488745525 588690.3639228154 562399.4361756397 539051.951032819 0.8207652042768 1.095060890370489 1.148532807448132 0.9865054427199775 1.1382568177025507 1.1076486115972122 1.0644122289997835 1.0920846549110705 1.0433121243659116 1.0 19.040064793584683 4.740545717250064 24.64926365260062 1.0804474861599984 0.8207650955743208 0.690314147284471 0.05098968410696661 73.9494940544573 918158.1217674561 0.011223170388955596 0.07303531081633954 55023.183918955816 -4.740545717250064 -0.25968239058567766 LIELQAGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LIELQAGKK 9 1 K7ELL7;P14314-2;P14314;K7EPW7 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 83.86200000000002 0.028076 0.0 210750.0 233520.0 218080.0 208670.0 176040.0 211610.0 203540.0 186500.0 320080.0 226210.0 False True 209615.34541652602 241292.57203417903 248783.76841465905 235087.60060458304 198457.65052917204 196981.8987763594 193693.992601692 200417.5770278111 241200.57285225994 211773.0841318755 0.9898110814025552 1.1393920668592668 1.1747657613549047 1.1100919721138363 0.9371240511640673 0.930155499145938 0.9146298897978684 0.9463788934716882 1.1389576434654902 1.0 17.692159712222917 3.2461380427783504 24.805000522580254 0.9668084294324143 1.1111672181128296 0.3987185245664775 0.07461332910633081 141.96749293004137 464732.6262414233 0.021034970092865122 0.02793999882324171 1762.5361887544973 -3.2461380427783504 0.1443587886804153 LIESAEELIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIESAEELIR 10 0 Q13217;X6R9L0 Q13217 DNAJC3 DnaJ homolog subfamily C member 3 0 85.73100000000002 0.032663 8288400.0 18200.0 19714.0 19938.0 16224.0 18246.0 20856.0 20061.0 20713.0 23262.0 17812.0 False True 18102.013222210102 20370.168572635335 22745.097095797315 18277.956736515815 20569.5199474851 19414.27380974318 19090.572789537917 22258.70923848283 17529.39179483028 16675.22291037959 1.085563492584102 1.2215829846541844 1.3640055798977953 1.0961146867271316 1.2335379297797262 1.164258727699445 1.144846632164352 1.3348372827224855 1.0512238360495323 1.0 14.025418426689427 1.0692118272278526 7.290271400940979 1.0004504410112631 1.2101065675811762 0.4142042539572699 0.0865134659788524 0.17698330790571457 14.491133588782402 0.08059038368348333 0.020204086071962106 11.72767243547683 -1.0692118272278526 0.20965612656991306 LIETGER ddPTM_BT-474_Trastuzumab_2h_R1 2 LIETGER 7 0 E5RHX8;Q9NPA8-2;Q9NPA8;J3KNT2;E5RI00;E5RHT9;E5RJ84 E5RHX8 ENY2 Transcription and mRNA export factor ENY2 0 ; 138.33 0.0065044 328600000.0 628770.0 587640.0 596840.0 642230.0 608750.0 743130.0 700740.0 671030.0 960450.0 763090.0 False True 625384.772182915 607199.242164119 680869.8841737214 723536.2521506753 686270.7041560648 691759.1722398557 666842.5291132445 721105.666021297 723759.9668706354 714388.9428857822 0.8754121664546852 0.8499561033396329 0.9530800986691365 1.0128043824809807 0.9606401540649082 0.9683228990715992 0.9334446393018438 1.0094020536045567 1.013117537831701 1.0 19.446350225434443 4.13803955988021 4.27449846120548 0.9825349643839707 0.8626355136586811 0.7827084376247219 0.025395777831444012 0.09071608923167238 2.935327916501939 0.00659422122703169 0.015605925177137875 13741.67142183551 -4.13803955988021 -0.11989945072528962 LIEVDDER ddPTM_BT-474_Trastuzumab_2h_R1 4 LIEVDDER 8 0 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 ;;; 183.9 0.00051381 9611800000.0 9920800.0 11474600.0 10575200.0 11135200.0 10117400.0 10826700.0 10777800.0 9462600.0 11855600.0 10858100.0 False True 9867387.515104497 11856525.124457836 12064096.238713797 12544915.178282233 11405790.919471975 10078275.712310445 10256436.638805738 10168747.262109192 8933946.236900939 10165126.761912897 0.9707097359647318 1.1663922548297516 1.1868121786652022 1.2341130093218338 1.1220510266736317 0.9914559796806598 1.00898265993445 1.0003561687208722 0.878881930953877 1.0 23.27712487030838 2.7573603008389718 3.873668221428227 0.9790632547993934 1.1482649047654707 0.5486383355099312 0.07255791022407479 0.17465482020761866 5.95507343246128 0.023881044493344484 0.02425543749525461 571.9529454092192 -2.7573603008389718 0.16920164996607734 LIEVDDERK ddPTM_BT-474_Trastuzumab_2h_R1 4 LIEVDDERK 9 1 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 ;;; 157.66 0.00013807 1871640000.0 2099130.0 1778290.0 1653040.0 1521990.0 1461640.0 2014200.0 2020560.0 1874260.0 2790260.0 1944000.0 False True 2087828.5173152667 1837479.307650993 1885773.663518746 1714673.7779468475 1647771.1901809797 1874963.0949167958 1922817.7935112251 2014126.798499436 2102637.810568444 1819932.255657865 1.1472012273119272 1.0096415962399574 1.036177944347209 0.942163518788248 0.9054024868553951 1.0302378503858312 1.0565326195705946 1.1067042700286522 1.1553385045139426 1.0 20.79545331851439 2.119902962242279 2.715713739530089 1.096497070135214 1.0040195874353912 0.18894127676143124 0.06965838964471006 0.39453177997988864 5.786022992709252 0.032680304756576184 0.021067241350633713 131.79622232142748 -2.119902962242279 -0.0924774826998227 LIFAGKQLEDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIFAGKQLEDGR 12 1 M0R2S1;P62987;P0CG48;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5GYU3;F5H6Q2;M0R1M6;J3QTR3;J3QS39;P0CG47;F5GZ39;Q49A90;M0R1V7;P62979;A0A2R8Y422 M0R2S1;P62979 UBA52;UBC;UBB;RPS27A Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ; 76.07300000000002 0.029276 939750000.0 1112040.0 673180.0 1224870.0 1327570.0 1094650.0 1827480.0 1403900.0 1451580.0 1142940.0 1271890.0 False True 1106052.9001992592 695586.3893540967 1397321.0492391046 1495640.2258811817 1234047.1890011271 1701150.6090251962 1335987.9935811914 1559904.2705738856 861277.7516113531 1190716.891280186 0.9288966237894709 0.5841744535984913 1.1735124104410668 1.256083823815719 1.0363900924210079 1.4286776491397744 1.1220030582960983 1.310054709055796 0.7233270628128572 1.0 20.1833990034345 4.2239840761276 24.903416688436995 1.1609813796649853 0.7565355732850985 0.3540465767538268 0.1992488492389709 177.0784183996395 302532.60181880154 0.046385405536170016 0.10090049178716452 16748.81463577554 -4.2239840761276 -0.4044458063798868 LIFPYVELDLHSYDLGIENR ddPTM_BT-474_Trastuzumab_2h_R1 3 LIFPYVELDLHSYDLGIENR 20 0 O75874;C9J4N6;C9JLU6;C9JJE5 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;; 355.07 2.8158999999999992e-95 7980830000.0 1062049.0 1486710.0 1533329.0 1483426.0 1453751.0 1363515.0 1290679.0 1221042.0 1594059.0 1284210.0 False True 1056331.046188737 1536194.2436148266 1749208.3952654104 1671227.5795009064 1638877.5727927422 1269258.4174190625 1228243.9258974139 1312162.354365642 1201224.5187462545 1202250.6183325034 0.8786279916028209 1.2777654011486357 1.4549448913501297 1.3900825285653537 1.3631746557683881 1.0557353001651997 1.0216205399843858 1.0914216506584824 0.9991465177304945 1.0 20.197306237534054 2.7238068022314836 21.524251199539428 1.0424863389369 1.2898099242094139 0.39273107386779127 0.14785506690307018 136.2047186744102 198706.71018528554 0.04949215808866031 0.04694287321477936 529.4278732313397 -2.7238068022314836 0.24732358527251397 LIFYDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIFYDLR 7 0 Q15046;Q15046-2;H3BVA8 Q15046 KARS Lysine--tRNA ligase 0 88.734 0.042782 309010000.0 535350.0 683490.0 609190.0 530020.0 441490.0 515300.0 514130.0 401730.0 807440.0 498830.0 False True 532467.735082977 706239.5514715702 694958.6568255968 597120.4776558253 497711.134583755 479678.5238857238 489259.56773267116 431709.13254360587 608457.2311416797 466994.2423301511 1.140201927171809 1.51230890545387 1.4881525163093587 1.2786463376430215 1.0657757408321278 1.0271615373506153 1.0476779441464272 0.9244420881711863 1.3029223403390882 1.0 18.833045237191996 3.338619044363499 3.2034210547699145 1.043798237044907 1.3930467086438916 0.551798691815204 0.13109160587751897 0.16498202000691436 3.3642074130583746 0.03711082567069864 0.05154663748919479 2180.816098278283 -3.338619044363499 0.34924847159898453 LIGEYGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIGEYGLR 8 0 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 RPS9 40S ribosomal protein S9 0 ; 168.45 0.00071364 304650000.0 358250.0 455850.0 468540.0 401700.0 297850.0 351090.0 404110.0 304110.0 541620.0 409010.0 False True 356321.221805317 471022.69168285636 534506.3593773138 452555.1788127714 335779.432004737 326819.9746769626 384561.6554498856 326804.23243928986 408145.0083361699 382906.6316289213 0.9305694714387488 1.2301241419587876 1.3959182610744367 1.1818943351478624 0.876922477357729 0.8535239342464226 1.0043222647096073 0.8534828217757251 1.0659126132129968 1.0 18.546633121136527 3.267565856320894 8.85347142156161 0.9298380688810948 1.2036134023983398 0.4700971395771957 0.12494995180257816 0.20902990175566916 57.68111260175557 0.03479863114619982 0.04658534423076676 1851.6796612185963 -3.267565856320894 0.27377533351724503 LIHEDGIIRPYDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LIHEDGIIRPYDR 13 1 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2;A0A3B3IU50 Q709C8-3 VPS13C Vacuolar protein sorting-associated protein 13C 0 ;;;; 217.88 1.5061e-11 1915170000.0 185590.0 243466.0 218357.0 202448.0 212356.0 228256.0 222527.0 188445.0 252707.0 216596.0 False True 184590.8040609876 251569.6186316948 249099.76760693244 228077.8960425389 239398.27786737605 212477.19997682888 211762.51887430844 202507.72280432066 190430.74595031273 202772.65784283503 0.9103337995601961 1.2406486224917035 1.2284682277035823 1.1247961064815624 1.1806240565871993 1.0478592244005385 1.0443346806571983 0.9986934380535677 0.9391342401691639 1.0 17.629503604815866 2.2992283808016842 1.4351384800770193 0.9798401171831133 1.1472411348929015 0.3626375840746672 0.08861464913860988 0.4246898981421403 1.7367420911299871 0.04874441748577917 0.03053703055988196 199.17204421640642 -2.2992283808016842 0.1674010177097882 LIHELAAVYTEAIADIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIHELAAVYTEAIADIKR 18 1 Q92797;A0A087WUE9 Q92797 SYMPK Symplekin 0 91.457 0.0016338 93833000.0 63839.0 50269.0 58340.0 68848.0 48729.0 76093.0 67544.0 54513.0 88972.0 63884.0 False True 63495.297917179654 51942.1732767478 66553.76489962963 77564.14974085544 54934.34931058867 70832.87001365492 64276.638676863025 58581.0368714051 67046.04276371935 59806.86842615594 1.0616723394500724 0.868498462528284 1.1128113986072377 1.2969104014637478 0.91852910470336 1.184360122468423 1.0747367379087227 0.9795034987283378 1.1210425245137468 1.0 15.86802355754035 4.216035952366612 24.99611179652584 1.0841448429673388 0.9650853039063245 0.16103721492330192 0.11031810982319933 359.03642072113666 398431.2540533913 0.026802040581628654 0.057963503478063186 16445.078555044453 -4.216035952366612 -0.1190595390610143 LIHEQEQQS(ph)SS ddPTM_BT-474_Trastuzumab_2h_R1 1 LIHEQEQQSSS 11 0 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 1 LIHEQEQQS(0.493)S(0.493)S(0.014) 100.22 0.0043949 350190000.0 116310.0 134230.0 125990.0 134040.0 169370.0 157560.0 130760.0 124400.0 128850.0 122910.0 True False 115683.79988325597 138697.76440625137 143728.2968752887 151009.45025656905 190938.26556535973 146668.24805634524 124434.63924829157 133683.35969040054 97096.64400154245 115065.77857145475 1.0053710262032203 1.2053780553018323 1.24909680931794 1.3123749922118992 1.659383597242067 1.2746469878119815 1.0814217814640592 1.1617994624473378 0.843835979793474 1.0 16.81209930333534 1.676344628234859 1.534736853085645 0.9427879121986728 1.2889632368650135 0.3854768563950962 0.16585954128281 0.4069342095512781 1.882195783472185 0.14134787441802124 0.05279337175465391 47.46184626249693 -1.676344628234859 0.3461753246663407 LIHEQEQQSS(ph)S ddPTM_BT-474_Trastuzumab_2h_R1 2 LIHEQEQQSSS 11 0 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 1 LIHEQEQQS(0.15)S(0.425)S(0.425);LIHEQEQQS(0.113)S(0.704)S(0.184) 93.772 0.0094413 1016310000.0 389480.0 526460.0 543000.0 556600.0 610940.0 615910.0 544970.0 448700.0 519590.0 507190.0 True False 387383.08295529574 543982.90284821 619449.6801593904 627065.5029305163 688739.587674917 573333.591396189 518607.71911243116 482184.2724524333 391544.00664929353 474820.6999727947 0.8158512949782755 1.1456596203143166 1.304597040935415 1.320636406471842 1.4505256146464949 1.2074738768319044 1.092218008065245 1.015508111756839 0.8246144421920262 1.0 18.85702330557739 1.8118705819828542 1.9375259587321212 0.9205893305645585 1.222986552993874 0.3446016596980741 0.1614441875242511 0.3668349864489771 2.6564392142515665 0.11415554734851083 0.050073664976280664 64.84411718805275 -1.8118705819828542 0.30239722242931544 LIHLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LIHLNK 6 0 O43813;E9PHS0 O43813 LANCL1 LanC-like protein 1 0 ; 132.11 0.015041 867270000.0 1631940.0 1703890.0 1615760.0 1530600.0 1540910.0 1927770.0 1781060.0 1585220.0 2281990.0 1854140.0 False True 1623153.8163655803 1760602.9486267443 1843244.9635623184 1724373.8030640476 1737135.7548108774 1794507.7973824588 1694903.3234900741 1703517.1659840555 1719624.141599378 1735807.197790884 0.9351002913407235 1.0142848531031656 1.0618949880540693 0.9934132115932073 1.000765382826897 1.0338174652497591 0.9764352432961062 0.9813976852683161 0.9906769275918998 1.0 20.727175280794235 2.2076401624049917 24.997704371411505 0.9848029524261886 1.00855398174911 0.08255092850988655 0.030901084593500473 452.1187864298274 365513.8369190446 0.011641035868709975 0.008598589796263587 161.3021523237365 -2.2076401624049917 0.02375102932292139 LIHPDEDISLEER ddPTM_BT-474_Trastuzumab_2h_R1 6 LIHPDEDISLEER 13 0 J3QRS9;O43670-2;O43670;O43670-4;X6R4W8;O43670-3;J3KS31 J3QRS9 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 ;;;;; 228.61 7.1507e-12 12416380000.0 7038340.0 8860500.0 8128710.0 8690390.0 8090050.0 8625880.0 8544550.0 7700070.0 9292770.0 8680160.0 False True 7000446.359473079 9155416.386214636 9273161.711986091 9790592.482954228 9120269.91401688 8029593.21873742 8131217.473149205 8274688.323563205 7002691.350238367 8126184.75734115 0.8614677820546617 1.126656193479195 1.1411458130592917 1.2048203154757786 1.1223311044925084 0.9881135438722987 1.0006193208693055 1.018274697248041 0.861744048326267 1.0 22.95414673545233 2.728323589184401 19.438927596228226 0.9807148161133965 1.1023269819434032 0.278172312371219 0.0934904560205748 46.91100447001206 89076.47717114582 0.03040166353263983 0.029132254304261064 534.9628072497073 -2.728323589184401 0.12161216583000667 LIHPDEDISLEERR ddPTM_BT-474_Trastuzumab_2h_R1 3 LIHPDEDISLEERR 14 1 J3QRS9;O43670-2;O43670;O43670-4;X6R4W8;O43670-3;J3KS31 J3QRS9 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 ;; 170.18 2.0868e-06 200370000.0 72832.0 123907.0 105322.0 132177.0 117156.0 96093.0 107130.0 85530.0 140689.0 114518.0 False True 72439.88060439589 128031.16959163664 120150.42212476506 148910.594647587 132075.12216198427 89450.31708859083 101947.71262365753 91912.6829125397 106018.0810860149 107209.36319620743 0.6756861382696701 1.1942163051311343 1.1207082902346297 1.3889700508253253 1.231936448687501 0.834351724717223 0.9509217253448248 0.8573195490801232 0.9888882642832948 1.0 16.71007138440081 2.7369330760994823 24.9847071159071 0.914673623653796 1.1410247977720887 0.2300300982907233 0.1770218602503274 197.2043887763538 3027298.81229221 0.05636539798065222 0.055791566626913335 545.6737673891571 -2.7369330760994823 0.22635117411829264 LIHTLDDR ddPTM_BT-474_Trastuzumab_2h_R1 8 LIHTLDDR 8 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ;;;;;;; 179.21 0.00024555 6515730000.0 3175490.0 3914720.0 3527400.0 3783050.0 3249060.0 3546580.0 3630950.0 2947940.0 3976210.0 3444300.0 False True 3158393.514670104 4045019.0887017897 4024027.2592895646 4261983.7421151465 3662808.53231261 3301413.2723513087 3455307.0769240167 3167930.2521360023 2996326.323984273 3224481.825186412 0.9795042074667338 1.254471046202266 1.24796090579823 1.3217577189689247 1.1359370996302198 1.0238585457557818 1.0715852233790342 0.9824618105741253 0.9292427392767366 1.0 21.620635907132055 2.8172974587631208 2.935722804496126 1.001650645307428 1.209721032332358 0.5254759458496828 0.08982544894255111 0.2113188017044563 3.56411192748515 0.029850790035437405 0.03129492694337377 656.5948299588334 -2.8172974587631208 0.20807038702492986 LIILDEIHLLHDDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LIILDEIHLLHDDR 14 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;;;; 229.32 7.6746e-13 1063097000.0 523441.0 623895.0 538869.0 521008.0 533006.0 533027.0 550255.0 145828.5 542849.0 391412.0 False True 520622.85181576264 644660.9679225078 614737.0712666862 586967.5593798469 600881.1547259254 496180.0981005935 523637.06347177055 156710.96317211856 409071.1377539256 366431.75105532754 1.420790775680227 1.759293418394768 1.6776304714213126 1.6018468860555173 1.6398173820783297 1.3540859837380066 1.4290166230510593 0.4276675335060055 1.116363788279253 1.0 18.483184991805704 1.8995606941804932 5.992806695074404 0.8048967254926742 1.5771934219844943 0.7254737414491865 0.20025672019566726 0.10826771037672599 5.32168175326701 0.08656804257939367 0.052518456206064865 79.3525146957013 -1.8995606941804932 0.7722966964918201 LIILDEIHLLHDDRGPVLEALVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIILDEIHLLHDDRGPVLEALVAR 24 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 256.33 4.7023e-44 728640000.0 255643.0 345490.0 295550.0 373190.0 319930.0 319960.0 310120.0 98429.0 358870.0 258211.0 False True 254266.6464926074 356989.42579688446 337160.87103334785 420435.8157359669 360671.1891263241 297841.91830482485 295118.3108265537 105774.27179233456 270431.2971116304 241731.75291444073 1.0518545595563662 1.4767998886899991 1.3947727883009378 1.7392659866442006 1.4920306694420122 1.232117480280896 1.2208504148439645 0.4375687948193245 1.1187247593713832 1.0 17.883047466627488 1.9522394350354657 5.878695450923868 0.7941370256222847 1.4073898827513736 0.51249460192164 0.23566989373256905 0.14750507924597656 12.301696413464182 0.10238669718051274 0.06352976034102525 89.5858533742837 -1.9522394350354657 0.6132528571290888 LIITPET(ph)PEPEAQPVGPPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIITPETPEPEAQPVGPPSR 20 0 Q96DU7 Q96DU7 ITPKC Inositol-trisphosphate 3-kinase C 1 LIITPET(1)PEPEAQPVGPPSR 150.28 9.9794e-07 40154000.0 42648.0 50844.0 45411.0 46984.0 55309.0 52231.0 45294.0 45142.0 56744.0 48830.0 True False 42418.38790663824 52536.311804152945 51804.47408051216 52932.16958262196 62352.273307873176 48620.39390854892 43102.95618011714 48510.72526643129 42760.20153064433 45713.62759453373 0.9279155940735379 1.1492483657200516 1.1332391850413277 1.157907879289619 1.3639756149067686 1.0635864285328072 0.9428907406436331 1.061187392449074 0.9353928747443669 1.0 15.480336687771349 2.4822612997230524 24.917615765850165 0.9968314791440992 1.1532408677011183 0.3500420906030248 0.10317675584977136 254.3681121950076 1233121.264852673 0.03553104700721293 0.030519721039410544 303.5717119115084 -2.4822612997230524 0.15640938855701914 LIKDDFLQQNGYTPYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIKDDFLQQNGYTPYDR 17 1 P38606;P38606-2 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 ; 243.95 1.5903e-20 2477140000.0 1407100.0 1650960.0 1546130.0 1458690.0 1639950.0 1708750.0 1651110.0 1517350.0 1975380.0 1511210.0 False True 1399524.3299435072 1705911.2055736035 1763811.6647971245 1643360.0044371467 1848787.9117548063 1590628.134464836 1571239.5014472827 1630582.36194718 1488574.0677358715 1414763.2839880276 0.9892286192206206 1.2057926756233517 1.2467185745909213 1.1615794833215742 1.3067825074901023 1.1243069087720943 1.110602401992063 1.1525478363778197 1.0521718259041761 1.0 20.432129253063056 1.1896425272482565 0.9627580067341998 0.9986624106709336 1.1798708082333242 0.3234000412960707 0.08019852265590624 0.579888450860918 1.1581369261011376 0.0737565427560816 0.02562630723018144 15.475422947788667 -1.1896425272482565 0.1812083975623906 LIKDDIER ddPTM_BT-474_Trastuzumab_2h_R1 3 LIKDDIER 8 1 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;J3KNK7;H3BNL6;Q6P474;Q6P996-4 H3BND4;Q6P996-4 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 0 ;; 126.31 0.0011167 2305060000.0 4188300.0 4383800.0 4065900.0 3876490.0 3767230.0 4560200.0 4695400.0 4083500.0 5706000.0 4468400.0 False True 4165750.658163878 4529712.132936942 4638343.378563659 4367253.2365345275 4246964.410378404 4244964.107556144 4468265.563830131 4388231.505592849 4299832.756482747 4183222.8864102955 0.9958232614611146 1.0828283015117983 1.1087966155549296 1.043992480229078 1.0152374199747234 1.01475924731298 1.0681394908088284 1.0490073383009424 1.0278756053021398 1.0 21.996183437626996 3.49196311633434 24.71789390960774 1.0343239159328586 1.066496828417241 0.16323203835143452 0.03221276233091158 1073.262321075604 1787424.0280806187 0.00877953129079736 0.013074644715478546 3104.2959359744755 -3.49196311633434 0.032172912484382366 LILADALCYAHTFNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LILADALCYAHTFNPK 16 0 P28838-2;P28838 P28838-2 LAP3 Cytosol aminopeptidase 0 176.56 3.1273e-09 205860000.0 148790.0 155080.0 148420.0 128460.0 135300.0 169750.0 165090.0 145010.0 205660.0 145640.0 False True 147988.93117212324 160241.74405216036 169316.24591023353 144723.0228286994 152529.65301407085 158015.5820485185 157103.965994956 155831.38254585984 154977.84870281114 136345.13051132267 1.0853994610378375 1.1752656178568344 1.2418209970188323 1.0614462158344629 1.1187026074349178 1.1589382140449542 1.1522521222854338 1.142918577007185 1.1366584792695704 1.0 17.0569036505784 0.47192471622338916 2.3540771264712856 1.0000005691708203 1.1440085344411728 0.4532752753077054 0.046613484370973304 7.86066274701131 33.8104713676812 0.04414286964170286 0.011862343058795927 2.964317488545731 -0.47192471622338916 0.14400796527035253 LILALQDEVS(ph)AMADGNEGPQSPFHHILPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LILALQDEVSAMADGNEGPQSPFHHILPK 29 0 A0A087WTD0;B7Z6Q0;Q12980 A0A087WTD0 NPRL3 Nitrogen permease regulator 3-like protein 1 LILALQDEVS(0.964)AMADGNEGPQS(0.036)PFHHILPK 71.068 0.0048981 167660000.0 92537.0 82746.0 84084.0 82381.0 74581.0 106490.0 100400.0 78567.0 129970.0 98073.0 True False 92038.79107382722 85500.15058898673 95922.29632877016 92810.42615328579 84078.44827377974 99128.59695049642 95543.26843475434 84430.06849514226 97940.63500877366 91813.89717548038 1.0024494537892996 0.9312332143528727 1.0447470293678696 1.0108537923828762 0.9157486051712175 1.0796687647517644 1.0406188101584029 0.919578311045596 1.0667299616046522 1.0 16.486424919557916 2.7411779521968205 24.99925822166814 1.0099811938775765 0.9834405781949068 0.10318620158852121 0.054283391541952664 835.6747758475542 7981920.922258142 0.017482051330273623 0.017756325111726822 551.0334361459616 -2.7411779521968205 -0.026540615682669633 LILDVFCGSQMHFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LILDVFCGSQMHFVR 15 0 P11413;P11413-3;P11413-2 P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 216.54 2.1919999999999995e-12 285050000.0 208520.0 272930.0 332220.0 257390.0 175378.0 207797.0 264520.0 186948.0 370490.0 235430.0 False True 207397.35148874982 282014.310060331 378993.68829199445 289975.5476092088 197711.34875315346 193432.48249152303 251724.15703547018 200899.00906270897 279187.70381165296 220404.6558382363 0.9409844392804794 1.2795297312925753 1.719535764118127 1.3156507357178213 0.8970379867939888 0.8776243031521566 1.1420999981970459 0.9115007498306057 1.266705109970816 1.0 17.749795174225145 3.2813490412533195 9.176132907934843 1.0071258234131286 1.3413165176329718 0.3272503253707897 0.2077082514733185 0.3605440928539408 72.53861164880831 0.058637923777060404 0.0791094149257517 1911.388819237462 -3.2813490412533195 0.33419069421984315 LILIESR ddPTM_BT-474_Trastuzumab_2h_R1 3 LILIESR 7 0 P62277 P62277 RPS13 40S ribosomal protein S13 0 ;; 149.4 0.004697 519131000.0 718488.0 943850.0 906000.0 823650.0 634404.0 718022.0 773420.0 643301.0 1045460.0 753730.0 False True 714619.7404395217 975265.4766806267 1033556.9249068302 927924.0055492626 715191.5889928928 668386.8291819823 736006.7198486814 691307.3872362893 787820.3914462753 705626.3060992821 1.0127453217978162 1.3821274352311437 1.4647369520849582 1.3150360148544449 1.0135557345452266 0.9472249311067207 1.0430545367807258 0.9797075041856814 1.1164838734561413 1.0 19.428544820722752 3.237998603142879 23.23930697859008 1.0118706211015795 1.3122002057362236 0.5747657574516927 0.11623777321771522 4.098966064152241 169506.00724864335 0.032915564337019226 0.04168146986324759 1729.8107954731836 -3.237998603142879 0.3003295846346441 LILPHVDIQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LILPHVDIQLK 11 0 P48735;P48735-2 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 185.77 0.00092517 0.0 963650.0 1065100.0 1093800.0 855670.0 967590.0 1906200.0 1083900.0 739070.0 1479100.0 1204400.0 False True 958461.8154715801 1100551.2096334547 1247797.532519967 963997.7342661774 1090806.8511447487 1774428.8807121431 1031467.6160999021 794223.1563214163 1114595.6239245737 1127534.1608612826 0.8500512434491969 0.976069060996594 1.106660512677345 0.854961000498481 0.9674268762833055 1.5737251626653344 0.914799437484006 0.7043894401520729 0.9885249268839663 1.0 20.104739712745925 2.013985902528972 24.995025983745577 0.8509928129871839 1.0575134308149536 0.1036287112615768 0.20744097466958844 410.9054510570279 734350.1627400351 0.07957735583935308 0.05874615816791738 103.27278822230991 -2.013985902528972 0.20652061782776976 LIMGIGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIMGIGHR 8 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 105.39 0.004397 1162800000.0 1101890.0 1505760.0 1543940.0 1323390.0 949950.0 1126490.0 1310350.0 1050580.0 1838070.0 1251320.0 False True 1095957.5466714888 1555878.311348857 1761313.331832949 1490931.0383097671 1070920.5017052218 1048618.3977722286 1246963.3644768961 1128979.6143371463 1385102.277376135 1171459.6862910509 0.9355486659053469 1.3281535246636704 1.5035202256164948 1.272712203208795 0.9141761464245131 0.8951382706922257 1.0644526474700098 0.963737487127363 1.1823729775639966 1.0 20.1598758765865 3.250607115490947 24.674179844053366 0.9982178989882453 1.2822485187233004 0.4056369269557446 0.15117566600933177 178.07078344610858 364730.07058304915 0.04243604620647106 0.05701348507589576 1780.7670675935613 -3.250607115490947 0.28403061973505506 LIMLVDDFYYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIMLVDDFYYGR 12 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 0 134.68 0.00032855 18579000.0 52226.0 65768.0 78562.0 64081.0 63611.0 64423.0 70529.0 68856.0 69350.0 69844.0 False True 51944.821018854076 67957.04812240443 89622.84672685467 72193.64802962702 71711.48379806383 59969.58964542985 67117.24282305565 73994.38436368335 52259.62174239016 65386.49612354313 0.7944273527168061 1.039313193874228 1.3706629356238738 1.1041063875516781 1.0967323231783224 0.9171555779976583 1.0264694822649985 1.1316462687322506 0.7992418135336282 1.0 15.996705094979141 2.787912794051941 21.935009540529087 0.9995755177384058 1.0961007352596728 0.09271269230267298 0.15322315075251314 268.60827184593757 119383.55139091461 0.0485475832499781 0.051492180296387094 613.6387746694112 -2.787912794051941 0.09652521752126697 LIMVQHWPETVCEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LIMVQHWPETVCEK 14 0 D6RHI9;O00584;H0YAE9;A0A087WZM2;A0A087WWI1;O00584-2;J3QQ64 D6RHI9 RNASET2 Ribonuclease T2 0 124.45 9.7011e-05 345700000.0 370630.0 394880.0 355040.0 353730.0 315780.0 357880.0 402850.0 365030.0 464980.0 353550.0 False True 368634.56926086394 408023.34208999947 405026.54593699885 398512.18173124595 355992.71122530143 333140.59795890324 383362.6064635539 392270.39218478213 350391.9094127836 330986.1363106162 1.1137462534530942 1.2327505515430022 1.2236964075042072 1.2040147245238677 1.075551729125046 1.006509220211765 1.158243697868314 1.1851565644328175 1.0586301689807212 1.0 18.33641126399257 -4.999996804686315 0.07361271986133677 0.4950093634011552 1.3165158780512054 0.3643683520812837 0.06620342457029811 347.5869689467361 1.8324903872155873 29.183202855779967 3.282629666508011 1.0000073575087243e-05 4.999996804686315 0.8215065146500502 LINQVLELQHTLEDLSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LINQVLELQHTLEDLSAR 18 0 A0A0C4DGB0;Q9UIL1-3;Q9UIL1-2;Q9UIL1 A0A0C4DGB0 SCOC Short coiled-coil protein 0 ; 291.18 3.5529e-49 1271130000.0 582210.0 722650.0 658060.0 695100.0 693910.0 680440.0 683310.0 662050.0 805140.0 662170.0 False True 579075.4460496114 746702.9683988494 750709.1280399428 783099.5887297923 782275.3253731992 633402.7843834695 650255.684802311 711455.5328217811 606724.0353232586 619909.7436877418 0.9341286404126933 1.2045349762641822 1.2109974648472162 1.2632477496986267 1.2619180991083816 1.0217661374629472 1.0489521925144234 1.1476759964917609 0.9787296320170037 1.0 19.241698654754334 2.7262429381801154 24.881024189892713 1.0574438947671143 1.1835145008230998 0.3165267902079041 0.09740512552367295 972.2614274884861 1963910.8559463304 0.032063955946436795 0.030423691408393242 532.4059963553372 -2.7262429381801154 0.12607060605598552 LIPGPLS(ph)PVAR ddPTM_BT-474_Trastuzumab_2h_R1 12 LIPGPLSPVAR 11 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR 222.91 7.6879e-12 22059857000.0 6318977.0 8145690.0 7517460.0 7596150.0 7163615.0 6486763.0 6334240.0 5681413.0 6714640.0 5861539.0 True False 6284956.329936345 8416814.367476419 8575853.025066338 8557821.81114919 8075858.908177323 6038348.34200763 6027828.612053361 6105388.887690654 5059906.9435662925 5487450.562703981 1.1453326564165687 1.5338296484495293 1.5628118972684695 1.5595259972478477 1.4716959753707348 1.100392299303411 1.0984752469611507 1.1126093653009932 0.9220870212401489 1.0 22.387704606566597 2.7119356856017682 4.539834230116985 1.0583939585989548 1.4727168546744318 0.729963448088377 0.12390824177459189 0.1088951706832693 5.686663536108541 0.04073156860691877 0.03966979422184929 515.1523503433096 -2.7119356856017682 0.414322896075477 LIPNATGTGT(ph)FSPGASPGSEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIPNATGTGTFSPGASPGSEAR 22 0 Q16512;Q16512-2;Q16512-3;K7EN76 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LIPNAT(0.005)GT(0.113)GT(0.441)FS(0.441)PGASPGSEAR 142.98 1.5478e-08 0.0 18018.0 19393.0 20274.0 21066.0 22992.0 28115.0 25609.0 19425.0 20771.0 23035.0 True False 17920.993089988002 20038.48428168393 23128.40297523296 23732.953440054356 25919.894915739187 26171.47622559116 24370.194834119764 20874.592138151347 15652.26536714038 21564.88657874431 0.8310265405083115 0.9292181625214344 1.0725028805868957 1.1005369007341326 1.2019490490289637 1.213615296793974 1.1300868541613633 0.9679898877245494 0.7258218266062305 1.0 14.396396507738096 1.5023550986484475 4.961741072098476 0.8565398286944177 1.074001438487294 0.2993436081705513 0.12569115501929812 0.19466265163438146 10.559121998313303 0.08170142307529554 0.034588301348378585 31.794726876150182 -1.5023550986484475 0.21746160979287632 LIQEQHPEEELIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LIQEQHPEEELIK 13 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 148.72 1.9561e-06 290140000.0 582330.0 505990.0 453680.0 407330.0 415430.0 531410.0 504740.0 508510.0 627180.0 528270.0 False True 579194.7999829447 522831.5712725857 517554.2005427488 458897.9362355137 468332.54805347696 494674.8775045854 480323.79790595546 546457.5983614596 472619.89278143167 494555.35632529913 1.1711425072544823 1.05717502517289 1.0465040847769564 0.9279000426671522 0.946977000781741 1.0002416740163818 0.9712235278875785 1.1049472852175948 0.9556460904460629 1.0 18.915772487486457 4.6839486590912145 1.6036306987115574 0.9970415327633568 1.2203783080808888 0.5688952892398926 0.047906906653804295 0.7619129046064956 2.0404245497153566 0.01402231725036598 0.2572031109625824 48300.1699743851 -4.6839486590912145 0.22333677531753193 LIQESDQHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LIQESDQHLK 10 0 O14776;O14776-2 O14776 TCERG1 Transcription elongation regulator 1 0 ; 70.675 0.053270000000000005 1210450000.0 883520.0 864800.0 819260.0 751330.0 775110.0 1025900.0 937100.0 918390.0 1333170.0 1041370.0 False True 878763.2264883002 893584.3452173605 934604.6868644247 846448.3009644003 873815.6640630916 954981.9477088383 891768.8929303604 986924.9252899275 1004628.1170627587 974908.8750382882 0.9013798612242483 0.9165824294934911 0.95865850726584 0.868233249934418 0.8963049639165237 0.9795602154830447 0.914720253106053 1.0123253060458266 1.0304841229630854 1.0 19.89490785055626 1.7046328174394003 4.66431028187145 1.0176351710501934 0.9200025004163945 0.6718545936773183 0.030343141390173068 0.09812986654611522 5.036139803933752 0.01652606198187661 0.00810532615172759 50.6562244453697 -1.7046328174394003 -0.09763267063379888 LIQNLDANHDGR ddPTM_BT-474_Trastuzumab_2h_R1 8 LIQNLDANHDGR 12 0 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 0 ;;;;;;; 252.42 4.6548e-21 26603100000.0 8360600.0 10384760.0 10797350.0 9433240.0 9051510.0 10913050.0 10155600.0 7992720.0 11855770.0 9616800.0 False True 8315587.458549982 10730410.458880013 12317523.027751395 10627487.216788115 10204166.145996982 10158656.540056461 9664334.829840546 8589177.352609795 8934074.342678826 9003047.590643302 0.923641397518793 1.1918642382865916 1.3681503850488101 1.1804321936310838 1.1334124409829822 1.1283575298007047 1.0734514876811834 0.9540299844173172 0.9923388999924695 1.0 23.101982015173203 2.134813975043155 1.6445644060680882 0.9751766126615122 1.1737864143582244 0.3587071869574324 0.10228535947599336 0.3993441875509053 2.0811285138696185 0.061959131624929886 0.034323856500007924 136.3998758542829 -2.134813975043155 0.19860980169671216 LIQSHPESAEDLQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LIQSHPESAEDLQEK 15 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 233.14 1.2708e-17 409640000.0 484730.0 453540.0 454940.0 447570.0 450180.0 616510.0 546940.0 489830.0 668100.0 544880.0 False True 482120.2675385658 468635.8047292804 518991.5975906323 504232.3161096146 507507.7545740896 573892.1148084366 520482.4226863004 526383.6019063409 503455.7070813389 510105.2919047622 0.9451387295714994 0.918704063977395 1.0174205322448 0.988486738153181 0.9949078408479683 1.1250463853560326 1.0203431153258367 1.031911666591018 0.9869642896693085 1.0 18.9604355419726 4.075157296672347 1.222415803321985 1.0303568916125132 0.922523161855012 0.4115339555813733 0.040034177503677416 0.5615920770893306 1.4021216159820813 0.01233321454375926 0.057511968691571005 11889.327678018713 -4.075157296672347 -0.10783372975750116 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 LIRPEYAWIVQPVSGAVYDRPGASPK 26 2 Q12769;G3V198 Q12769 NUP160 Nuclear pore complex protein Nup160 1 LIRPEYAWIVQPVSGAVYDRPGAS(1)PK;LIRPEYAWIVQPVS(0.002)GAVYDRPGAS(0.998)PK;LIRPEYAWIVQPVS(0.004)GAVYDRPGAS(0.995)PK 132.17 4.5379e-05 4566250000.0 1124460.0 968420.0 871620.0 886331.0 825710.0 925340.0 1035620.0 826390.0 1260550.0 947430.0 True False 1118406.0322992506 1000653.2742777485 994336.5197431466 998540.413722434 930859.2741333959 861373.42381606 985523.1041474129 888059.4181233919 949904.343004613 886964.2062643681 1.2609370529275892 1.1281777406691587 1.1210559712787047 1.1257956146032002 1.0494891085333655 0.971147897212122 1.1111193633147225 1.001234786986091 1.0709613040703527 1.0 19.75851635969952 7.999999999966715 0.40245627137796675 1.024799025262844 4.791495123596977 0.7241635532973894 0.04238103335081648 36.86839804956178 0.488006496201061 0.028339183725431375 110.2973639014369 99999999.99233577 -7.999999999966715 3.7666960983341333 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIRPEYAWIVQPVSGAVYDRPGASPKR 27 3 Q12769;G3V198 Q12769 NUP160 Nuclear pore complex protein Nup160 1 LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR;LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR 185.81 8.313399999999998e-18 2372400000.0 1468530.0 1410240.0 1290610.0 1324650.0 1316720.0 1736650.0 1749330.0 1550830.0 2205850.0 1793120.0 True False 1460623.5976490227 1457178.9858919177 1472316.6698167815 1492350.5541805765 1484396.4871891136 1616599.473134372 1664708.224810447 1666560.809555175 1662247.8243756476 1678681.5464327333 0.8701016585027145 0.8680496839847215 0.8770672870893913 0.8890015842205939 0.8842633019607063 0.9630173611961791 0.991676014040912 0.9927796091502195 0.990210339720474 1.0 20.678897139707747 2.6586768856819605 2.220603273457589 0.9935972900361714 0.8751040280663189 0.988421302804147 0.006019345968720216 0.03135551595470714 0.30504167673999427 0.002370704406946089 0.002230448189040658 455.69775148572216 -2.6586768856819605 -0.11849326196985244 LIS(ph)DSVER ddPTM_BT-474_Trastuzumab_2h_R1 3 LISDSVER 8 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 LIS(1)DSVER;LIS(0.991)DS(0.009)VER;LIS(0.999)DS(0.001)VER 131.82 0.0010372 847490000.0 1505530.0 1535310.0 1444100.0 1619280.0 1429350.0 1611070.0 1450130.0 1427300.0 2132980.0 1710960.0 True False 1497424.3937601089 1586411.8652355056 1647416.7276577859 1824280.6819714794 1611369.250078804 1499700.5229508518 1379981.6718654411 1533812.3736825462 1607335.6594676776 1601765.067973446 0.934858940115763 0.9904148223450987 1.0285008460960496 1.138919007816521 1.0059959992244738 0.9362799532445002 0.861538124071712 0.9575763664412574 1.003477783106657 1.0 20.611231131475055 2.816567947498385 5.018681885045369 0.9424678766089641 1.0265023773547806 0.23456192333474168 0.06029588770812983 0.29496155282850683 13.38917267381183 0.01975334087107693 0.020908563366478616 655.492832874853 -2.816567947498385 0.08403450074581642 LIS(ph)EVDSDGDGEISFQEFLTAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LISEVDSDGDGEISFQEFLTAAK 23 0 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 1 LIS(0.884)EVDS(0.113)DGDGEIS(0.002)FQEFLTAAK;LIS(0.539)EVDS(0.461)DGDGEISFQEFLTAAK 92.31 3.6981e-05 8206900.0 23991.8 25348.6 23756.5 22013.4 19505.0 21512.8 18663.8 25454.0 17363.8 20341.2 True False 23862.630814539574 26192.312827447702 27101.208704800312 24800.29418291526 21988.84613480746 20025.670771684076 17760.96069136023 27353.506732793037 13084.724152999477 19043.007201022527 1.253091518720754 1.375429445095273 1.423158034795318 1.3023307674632183 1.1546939988357907 1.0516023315166727 0.9326762576872072 1.4364068891033277 0.6871143835043493 1.0 14.2169737012324 3.186348673665426 2.672530742167162 1.0744091046543451 1.3544135048029113 0.39394955081224003 0.17983591204625252 0.32042931479974757 4.672947281860429 0.054938616325348105 0.071043639401471 1535.849545963525 -3.186348673665426 0.2800044001485662 LIS(ph)QIVSSITASLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LISQIVSSITASLR 14 0 P68363;P68363-2;F8VVB9;C9JDS9;P68366-2;P68366;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 1 LIS(0.997)QIVS(0.002)S(0.001)ITASLR 108.14 0.00088443 299350000.0 91027.0 92711.0 106390.0 90331.0 89923.0 99595.0 94811.0 81636.0 119570.0 107570.0 True False 90536.92074605047 95796.82959001703 121368.78724154252 101766.89533815398 101374.16103462141 92710.23207141203 90224.6297168076 87728.0928592084 90103.5756559133 100704.79050468953 0.8990329088846516 0.9512638784105911 1.2051937810832418 1.0105467160811479 1.0066468588691488 0.9206139212125641 0.8959318545288677 0.8711412080751327 0.8947297859848826 1.0 16.61977278809902 2.7359522361164275 2.821255617187951 0.9010265473380521 1.0241650097046502 0.262870503237298 0.08042703221339474 0.33379672769009344 5.339386106972692 0.02827017071002648 0.028167348918461475 544.4427715123783 -2.7359522361164275 0.12313846236659809 LIS(ph)SVEDFTEFV ddPTM_BT-474_Trastuzumab_2h_R1 2 LISSVEDFTEFV 12 0 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7 P49815 TSC2 Tuberin 1 LIS(0.5)S(0.5)VEDFTEFV;LIS(0.5)S(0.5)VEDFTEFV 109.71 0.0016448 234203000.0 46462.0 58225.0 51668.0 59757.0 56213.0 56629.0 57541.0 52019.0 60508.0 56716.0 True False 46211.8537544135 60162.98392724427 58942.40529369325 67322.23007297677 63371.392349445356 52714.3705203273 54757.52200203386 55900.92192712977 45596.61416566033 53096.33632298946 0.8703397815115327 1.1330910585104743 1.1101030574904767 1.2679260893529454 1.193517231847257 0.9928061740392288 1.0312862580374522 1.052820699098329 0.8587525491079517 1.0 15.69632469724547 2.71844759693231 23.89446663071048 0.9992209886607066 1.1242251021556886 0.25860284618232776 0.10670586768792993 691.0768450575682 821004.2662083185 0.035406465158146785 0.03342688561392204 522.9348637354258 -2.71844759693231 0.12500411349498197 LISEVDS(ph)DGDGEISFQEFLTAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LISEVDSDGDGEISFQEFLTAAK 23 0 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 1 LIS(0.172)EVDS(0.821)DGDGEIS(0.007)FQEFLTAAK 134.29 1.2683e-05 26505000.0 22971.0 16906.0 16936.0 13271.0 13862.0 17838.0 16577.0 16616.0 21032.0 18713.0 True False 22847.326688318022 17468.705990107195 19320.441589649065 14951.107239293722 15627.243533488896 16604.90104613534 15775.107179710385 17855.970294338364 15848.945414361206 17518.720318994685 1.3041664158280895 0.997145092336838 1.1028454840220756 0.8534360368253024 0.8920311100888486 0.9478375556992861 0.9004714324142851 1.019250833919531 0.9046862513797298 1.0 14.096609774530346 6.662156104896407 0.938388791828941 0.9405302991842798 14.393628863323238 0.7215861566412922 0.06626413895790444 34.83190708662932 1.0502477636396164 0.0198601094432884 935.9029182669483 4593630.988460325 -6.662156104896407 13.453098564138958 LISGGHDNR ddPTM_BT-474_Trastuzumab_2h_R1 4 LISGGHDNR 9 0 Q15061;C9JEE7 Q15061 WDR43 WD repeat-containing protein 43 0 ;;; 138.08 0.00014665 435370000.0 233836.0 446859.0 415478.0 494395.0 432877.0 357878.0 370800.0 322583.0 338194.0 378642.0 False True 232577.05295762213 461732.4316830303 473973.69100048475 556985.356308538 488001.3200870054 333138.736214196 352862.9874064433 346655.78150328354 254850.62026742435 354476.7433882748 0.6561137149211217 1.3025746830935914 1.33710800451955 1.571288855185758 1.3766807814313362 0.9398042112153285 0.9954474982860472 0.9779366008324427 0.7189487745554993 1.0 18.435331452256946 2.7263506667565744 23.145979403312694 0.9352457086232127 1.274570530275728 0.32077418618990916 0.23282983591937403 339.01584349232724 642658.3954377424 0.0769899005151934 0.07317960269068499 532.5380782874845 -2.7263506667565744 0.3393248216525153 LISGVSRPDEVLECIER ddPTM_BT-474_Trastuzumab_2h_R1 2 LISGVSRPDEVLECIER 17 1 Q9H974-2;Q9H974-3;Q9H974;Q9H974-4 Q9H974-2 QTRTD1 Queuine tRNA-ribosyltransferase subunit QTRTD1 0 ; 140.8 5.909e-07 166473000.0 58277.0 66481.0 65771.0 67392.0 57365.0 70581.0 67541.0 62062.0 76517.0 60570.0 False True 57963.2431071834 68693.77989638686 75030.98510821976 75923.82029014248 64670.09272100641 65701.9015998026 64273.78379832406 66693.38158445046 57660.410625269855 56704.37074341408 1.0222006231136165 1.2114371254946918 1.3231957982169165 1.338941236711645 1.1404780949538622 1.1586743797422976 1.1334890583507466 1.1761594513805014 1.0168600739117948 1.0 15.791172321186515 1.3362160099379299 0.8139141219533033 0.9921343249357886 1.2145869117383736 0.38679630063904724 0.08828466010150357 0.6046883681066958 0.8743436737160192 0.08647397842156292 0.03378611224283988 21.687825484017775 -1.3362160099379299 0.22245258680258506 LISKPVASDSTYFAWCPDGEHILTATCAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LISKPVASDSTYFAWCPDGEHILTATCAPR 30 1 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2;H7C5R5 F8WAE5 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed 0 ; 226.64 3.9394e-35 473660000.0 411220.0 442540.0 432730.0 438530.0 390010.0 493190.0 479210.0 425780.0 557870.0 545370.0 False True 409006.0372108371 457269.67637892085 493654.6226434135 494047.85303650645 439675.4617296213 459096.93614438217 456028.78154002625 457553.8656670309 420390.41357501334 510564.01968525205 0.8010866834348757 0.895616727282926 0.966880946580876 0.9676511348000446 0.8611563776089598 0.8991956315828956 0.893186288021539 0.8961733456053164 0.8233843305961354 1.0 18.961732346591052 4.722785175841922 4.604077992376324 0.9089123469528624 0.7956269577183862 0.30441711367762825 0.05024310169668607 0.21848519586184567 12.056459816565427 0.01186233039859873 0.07742777753574565 52818.3920492879 -4.722785175841922 -0.11328538923447617 LISPESTVMLLEAQAATGGIIDPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LISPESTVMLLEAQAATGGIIDPHR 25 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 217.94 1.4795e-33 232990000.0 196243.0 257100.0 370961.0 338208.0 305987.0 391143.0 553206.0 280761.0 379013.0 521222.0 False True 195186.4494926469 265657.41807976784 423189.084349186 381025.09812275285 344952.6307229599 364104.20506158343 526445.3123278548 301712.8114954703 285610.3246640015 487957.165719395 0.40000734327752646 0.5444277423164987 0.8672668711100462 0.780857675408881 0.7069321960143703 0.746180670438121 1.078876076246809 0.6183182309673745 0.5853184351600338 1.0 18.89639498387153 4.40460508250463 4.193211232527517 0.7843775758726481 0.4271034974501624 0.4490973322783802 0.14723373268665133 0.17938665012043437 5.960123762622175 0.035955048065856775 0.11488373168334129 25386.631701732033 -4.40460508250463 -0.3572740784224857 LISPESTVMLLEAQAATGGIIDPHRNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LISPESTVMLLEAQAATGGIIDPHRNEK 28 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 209.16 9.743799999999999e-26 170020000.0 141860.0 153960.0 147550.0 149110.0 134730.0 176590.0 188370.0 159230.0 231450.0 193610.0 False True 141096.24152212756 159084.46552921447 168323.75747240914 167987.31071140713 151887.06689272542 164382.74894814662 179257.8234567196 171112.55115355673 174412.24877110592 181253.64404213952 0.7784463714799809 0.8776897500180965 0.9286641289996668 0.9268079083273597 0.8379807627890411 0.9069210708388814 0.9889887974613304 0.9440502675564134 0.9622551297813188 1.0 17.467650474743284 7.999999999999999 0.188749525413218 1.0004368631505316 0.18065129551215972 0.6413778641475191 0.038873803670521 38.13168562748573 0.44310040931904504 0.08414879707552715 9.099601815045641 99999999.99999979 -7.999999999999999 -0.8197855676383718 LISQIVSSITASLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LISQIVSSITASLR 14 0 P68363;P68363-2;F8VVB9;C9JDS9;P68366-2;P68366;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ; 239.03 5.583e-17 1888550000.0 581940.0 684590.0 658300.0 685840.0 627250.0 657260.0 639060.0 612330.0 832440.0 718640.0 False True 578806.8996996118 707376.1643066062 750982.9179538246 772667.27367924 707126.5694979735 611825.1632236185 608146.226353726 658025.1739487366 627296.3161245163 672775.7799413411 0.8603266005653141 1.0514292954604902 1.1162454718855996 1.14847664960027 1.0510583029008973 0.9094042643404362 0.9039359686919018 0.9780750044332889 0.9324002659239752 1.0 19.359766243663234 2.752154405768812 22.405089651206165 0.9429187851064245 1.055486727396616 0.3010650630762587 0.07596713042110277 238.00112950078702 392268.5203378631 0.024130109580257027 0.025423056982764865 565.1378639321557 -2.752154405768812 0.11256794229019151 LISRIWVY(ph)NHY(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 LISRIWVYNHYR 12 1 P51587;A0A590UJU6 P51587 BRCA2 Breast cancer type 2 susceptibility protein 2 LIS(0.025)RIWVY(0.987)NHY(0.987)R 54.416 0.026954 0.0 56496.0 84487.0 73899.0 78030.0 69430.0 82769.0 87894.0 70979.0 88420.0 78716.0 True False 56191.8318132957 87299.09872152995 84303.33685837714 87908.58999940386 78271.49895614879 77047.37384726849 83642.23143231371 76275.81340405894 66630.07576729824 73692.2774878419 0.7625199509211327 1.184643787619849 1.1439914701005935 1.192914549477826 1.0621397739954825 1.0455284661269986 1.1350203071972285 1.0350584349444658 0.9041663256816996 1.0 16.16922582093573 1.4430256056549835 5.089682368277876 0.9540882099652365 1.084874876638319 0.14253182636333217 0.11760638854394256 0.3260474089802767 16.398389588321766 0.07473309598245721 0.028726928645585115 27.734836222054458 -1.4430256056549835 0.13078666667308247 LISS(ph)VEDFTEFV ddPTM_BT-474_Trastuzumab_2h_R1 1 LISSVEDFTEFV 12 0 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7 P49815 TSC2 Tuberin 1 LIS(0.006)S(0.994)VEDFTEFV 157.91 7.8069e-05 106770000.0 175360.0 196830.0 191980.0 209750.0 194510.0 187630.0 198400.0 188240.0 207150.0 196580.0 True False 174415.8812443278 203381.36756375243 219009.11527992613 236304.32849384777 219279.6955489055 174659.57973351114 188802.63403839897 202287.42466335194 156100.65816778844 184034.09609939455 0.9477367778095203 1.1051287336119968 1.190046409452529 1.2840247188011438 1.1915166819439547 0.9490609807390238 1.025911165594168 1.099184493258787 0.8482159636520854 1.0 17.48961355439559 2.7419185136079256 24.983980337139958 1.0029969872085684 1.1519199929250523 0.3777605918255531 0.10050160758308914 358.2311751908199 2665377.7297148244 0.033078654407413755 0.033800724479087635 551.973863066025 -2.7419185136079256 0.14892300571648387 LISSDGHEFIVK ddPTM_BT-474_Trastuzumab_2h_R1 4 LISSDGHEFIVK 12 0 E5RHG8;Q15369-2;Q15369;R4GMY8 E5RHG8 TCEB1 Transcription elongation factor B polypeptide 1 0 ;;; 147.26 6.467e-05 2513540000.0 6676260.0 8023750.0 7297620.0 7304630.0 7261120.0 8619200.0 8345100.0 7963760.0 9756400.0 8435500.0 False True 6640315.757962223 8290815.668290701 8325061.463949869 8229395.409039412 8185780.59196992 8023374.991414389 7941415.631622184 8558056.210353896 7352065.949062073 7897139.1680051135 0.8408507963067371 1.0498505207911935 1.0541870020068107 1.0420729879473847 1.0365501250293554 1.015985006813697 1.0056066459859863 1.083690692070675 0.930978395169813 1.0 22.91289868392725 4.7422088659230495 24.946452811960036 1.030094000271078 0.8408507223555864 0.6584942319692482 0.03944213985864105 192.37957264709308 1315420.4759023986 0.008833134523707393 0.06602575798031753 55234.30146019977 -4.7422088659230495 -0.18924327791549145 LISWYDNEFGYSNR ddPTM_BT-474_Trastuzumab_2h_R1 20 LISWYDNEFGYSNR 14 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;;;;;;;;;;;;;;;; 414.59 1.5438999999999994e-132 82722401000.0 7850661.0 8610828.0 8490299.0 8794947.0 7945416.0 9371471.0 10032065.0 8101066.0 9957415.0 9684100.0 False True 7808393.913466443 8897434.204624558 9685659.300198155 9908386.388433766 8957217.631429745 8723643.267839849 9546775.689740079 8705608.681299618 7503543.495775087 9066052.44702487 0.861278264061759 0.9814011397589425 1.0683436210846777 1.09291077305485 0.9879953467916633 0.9622317231026623 1.0530245380251426 0.9602424795321434 0.8276527782758923 1.0 23.112043076548936 1.4785749856270587 6.797693097683295 0.9070989420371487 1.0042304397621014 0.18708199059040964 0.07233220199595357 0.1877128573200693 22.4983359292956 0.04139943871254824 0.018298157153922724 30.100588431371623 -1.4785749856270587 0.09713149772495266 LIT(ph)EMYT(ph)VAWFVRDMRLMFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LITEMYTVAWFVRDMRLMFR 20 2 Q9HB58;Q9HB58-6 Q9HB58 SP110 Sp110 nuclear body protein 2 LIT(0.996)EMY(0.193)T(0.811)VAWFVRDMRLMFR 77.847 0.011032 152240000.0 14201.0 27285.0 20894.0 27202.0 28263.0 21562.0 20492.0 9481.6 9721.3 17012.0 True False 14124.54339387942 28193.164730869205 23835.69358609635 30645.770410916102 31862.12552207451 20071.46969148841 19500.72367295803 10189.165138589236 7325.615873746179 15926.279595294047 0.8868702391770762 1.770229171362772 1.4966265940188193 1.9242265732903134 2.0006006632891995 1.260273598199243 1.2244368533326624 0.6397705802929623 0.459970316979163 1.0 13.959121669872287 2.0510676922707027 1.8783625895378822 0.6606415087098882 1.6209934395746302 0.5801293995386847 0.32646829248286247 0.22859191275190835 1.5247028221377656 0.18699020522581178 0.09972992541987147 112.47802766720466 -2.0510676922707027 0.9603519308647419 LITPPPPPPS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 LITPPPPPPSPER 13 0 Q96HE9;J3QKY4;J3QR53 Q96HE9 PRR11 Proline-rich protein 11 1 LITPPPPPPS(1)PER;LITPPPPPPS(1)PER 137.8 5.9315e-05 155026000.0 194141.0 241050.0 230720.0 200785.0 259540.0 303960.0 263080.0 216120.0 279470.0 277150.0 True False 193095.76642709295 249073.20353219807 263203.3705458096 226204.36041305002 292590.880585897 282947.96064487635 250353.81533680437 232247.97183512305 210598.36320613942 259462.04971994716 0.744215836711044 0.9599600550486578 1.0144195300619134 0.8718206021158234 1.1276827609344324 1.0905177113580924 0.9648956971049375 0.8951134552656241 0.8116730883512667 1.0 17.98516401230822 4.736560288253889 5.398803098870561 0.9710905222715605 0.7356793745349061 0.35909783305488807 0.09087527537963266 0.17432674453476024 18.954287088499555 0.023043554816851847 0.15215017945304687 54520.55752385355 -4.736560288253889 -0.2354111477366544 LITSEEERS(ph)PAKR ddPTM_BT-474_Trastuzumab_2h_R1 3 LITSEEERSPAKR 13 2 Q12888;Q12888-2;A6NNK5;Q12888-3;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR 249.54 7.2846e-18 1568850000.0 1538690.0 1193690.0 1077868.0 1042063.0 937490.0 1406460.0 1588610.0 1273150.0 2081170.0 1637140.0 True False 1530405.8640045312 1233421.2500491568 1229622.4454033945 1173988.0689548748 1056873.7945614285 1309234.7306507172 1511762.8652204694 1368158.9179247047 1568293.5397492426 1532656.3235739295 0.998531660663396 0.804760487447701 0.8022819117961785 0.7659825956397759 0.6895699827192531 0.8542259021238199 0.9863678125147198 0.8926716948091526 1.0232519291032005 1.0 20.547602798700684 2.378061099505337 4.867693932342273 0.9585733167464474 0.8054547407446772 0.4791416238129774 0.07972911161351771 0.19788803818058032 7.836903772286789 0.028837391849628732 0.023904308230475093 238.8147240097697 -2.378061099505337 -0.15311857600177026 LIVAYVDDLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIVAYVDDLDR 11 0 O14776;O14776-2 O14776 TCERG1 Transcription elongation regulator 1 0 ; 150.85 7.838100000000001e-05 38847000.0 41766.0 52517.0 45817.0 50821.0 50707.0 47273.0 50480.0 42144.0 53579.0 50049.0 False True 41541.13649663884 54264.99659780313 52267.63535149692 57254.93338920547 57164.23588606415 44005.128778672275 48038.08954767327 45288.999282895784 40375.17337181719 46854.829970895335 0.8865924072810171 1.158151606387447 1.1155228902540857 1.2219643828559474 1.2200286698633347 0.9391802041754671 1.0252537375018314 0.9665812320955557 0.8617078195971879 1.0 15.515910153493532 2.723127944481899 24.817959760594146 0.9629168049203684 1.127912154170217 0.4127343133041441 0.09628893625892743 741.552681936514 1192521.7976198937 0.031364946852718255 0.029675055404807277 528.6009562960672 -2.723127944481899 0.1649953492498487 LIVAYVDDLDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 LIVAYVDDLDRR 12 1 O14776;O14776-2 O14776 TCERG1 Transcription elongation regulator 1 0 ;;;; 238.92 6.0075e-16 1572480000.0 660050.0 866241.0 787977.0 825663.0 740447.0 752503.0 786418.0 666538.0 929009.0 803837.0 False True 656496.3641384488 895073.308031257 898917.3123811351 930191.8511428663 834738.5364767887 700484.2388115253 748375.9569314999 716278.4501713836 700067.1800328206 752535.4344605205 0.8723793380029734 1.1894101819576368 1.1945182528521772 1.2360771447389778 1.1092348589208934 0.9308322329216168 0.9944727153851532 0.9518202298139902 0.9302780280834038 1.0 19.52139998975352 2.8071629020884212 5.334540125088459 0.9608484294414427 1.1367317420513823 0.4062795761344148 0.09528857739415678 0.2073476550415722 11.360789492501427 0.02943770489485588 0.03111406862417414 641.4501367952267 -2.8071629020884212 0.1758833126099396 LIVDHNIADYMTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LIVDHNIADYMTAK 14 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 218.68 5.295e-12 1266730000.0 1508870.0 1480320.0 1520670.0 1346830.0 1373110.0 1590970.0 1617180.0 1540790.0 2050090.0 1730810.0 False True 1500746.4115712168 1529591.5563276631 1734767.1180994117 1517338.539906409 1547967.4194393982 1480989.98864054 1538950.8251724702 1655771.5737730884 1544872.7892985826 1620348.2239790056 0.9261875869409794 0.9439894052967973 1.0706137683413715 0.9364274403809072 0.9553300929587434 0.9139948850030207 0.9497654901570157 1.0218615660941668 0.9534202379689214 1.0 20.62787246084222 1.76123698799722 24.999999999283858 0.9933513397251768 0.9580492588533711 0.120230390624398 0.04338139158341396 26.81607195790416 29586.813996303168 0.02056484998846222 0.01140471827702319 57.70812821050266 -1.76123698799722 -0.03530208087180564 LIVENLSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 LIVENLSSR 9 0 Q08170;A0A0D9SEM4;Q13243;Q13243-3;B4DJK0;B4DUA4;Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q08170;Q13243;Q13247 SRSF4;SRSF5;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 5;Serine/arginine-rich splicing factor 6 1 LIVENLS(0.156)S(0.844)R;LIVENLS(0.006)S(0.994)R;LIVENLS(0.048)S(0.952)R 116.6 0.0013502 335011000.0 747800.0 861920.0 851590.0 838010.0 670920.0 920390.0 917310.0 740200.0 982150.0 829580.0 True False 743773.9278883904 890608.4861583582 971486.4698470281 944101.9800768994 756357.6851456048 856765.6056650145 872936.2108355036 795437.4826594397 740112.2926357387 776635.4941608289 0.9576872721894508 1.1467522317154453 1.2508911544105255 1.215630739484836 0.9738901850769328 1.1031759584858634 1.123997315856301 1.0242095405630756 0.9529725311298652 1.0 19.56687811791761 1.5944604893053707 3.28383824829045 0.9779896067414166 1.1158210404400177 0.2849180252584177 0.08711929778392165 0.264324801341833 6.654924223269441 0.05874316897950206 0.024223837983286638 39.30614838297491 -1.5944604893053707 0.13783143369860118 LIVENLSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIVENLSSR 9 0 Q08170;A0A0D9SEM4;Q13243;Q13243-3;B4DJK0;B4DUA4;Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q08170;Q13243;Q13247 SRSF4;SRSF5;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 5;Serine/arginine-rich splicing factor 6 0 117.53 0.0026459 108220000.0 81953.0 109660.0 95597.0 102110.0 86946.0 92408.0 97195.0 83628.0 114430.0 101970.0 False True 81511.77415383428 113309.9668091302 109056.2266559804 115037.11553042574 98018.05773068273 86020.05246503394 92493.30652904334 89868.74601437947 86230.25978344203 95462.18729909085 0.8538645138985892 1.1869617700474513 1.1424023452793755 1.205054260594355 1.0267736420451392 0.901090315430612 0.9688999293432723 0.9414067345095848 0.9032923110516583 1.0 16.542641772396713 2.9960142989118306 7.205957853903051 0.9436204067171939 1.1081306764131431 0.37177363353650117 0.09418539145671828 0.12879251230078378 43.19921795364531 0.027210868824022925 0.03097679431414479 990.8645680377666 -2.9960142989118306 0.16451026969594917 LIVLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LIVLDR 6 0 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 ; 118.06 0.05163 127150000.0 179455.0 228970.0 198401.0 205270.0 185729.0 202501.0 182556.0 157381.0 232570.0 194083.0 False True 178488.83421932466 236591.12803471196 226334.13626759345 231257.16095319248 209380.4872479697 188502.5825060798 173725.0688483568 169125.56938452483 175256.23977833704 181696.45677718378 0.9823462569675057 1.3021229595293984 1.2456717113925304 1.2727664867828739 1.1523641735333074 1.0374587696954511 0.9561279946223588 0.9308138000287218 0.9645550765651725 1.0 17.471170760603076 2.6654480002820806 2.1905815844159506 0.9547883261137926 1.2111862597632088 0.6298912103409288 0.08333942424885049 0.1843047875335286 1.7453649017563804 0.029924195307330415 0.02825539111022755 462.85824069506725 -2.6654480002820806 0.2563979336494162 LIYGTVTEDNEEEDDDTLEELGGLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIYGTVTEDNEEEDDDTLEELGGLFR 26 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 87.65899999999998 0.012126 10269000.0 4530.8 3800.6 3982.5 4383.4 4099.8 4558.8 4072.3 4048.9 4551.5 5595.0 False True 4506.406676219204 3927.1006734887847 4543.201383489458 4938.337990559875 4621.885228581574 4243.660886260891 3875.3072913032875 4351.049477897607 3429.843811975324 5237.922309879507 0.8603424047965441 0.7497439712081417 0.8673670808213971 0.9428047417284958 0.8823890380855792 0.8101801888616618 0.739855817256754 0.8306823241136806 0.6548099817185383 1.0 12.35477894611028 2.579824695628945 5.578192388576368 0.7922901846255964 0.8589210593126422 0.06846327506086713 0.09267188077751633 0.5361224856703479 23.967213395074513 0.029251762595472474 0.027383878442818706 380.03596261123334 -2.579824695628945 0.06663087468704576 LIYKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LIYKPR 6 1 B7Z6D5;Q96GQ7;A0A087X059 B7Z6D5 DDX27 Probable ATP-dependent RNA helicase DDX27 0 68.64 0.08719400000000001 535880000.0 700040.0 813700.0 687910.0 705820.0 702810.0 617660.0 713940.0 659280.0 1025500.0 809140.0 False True 696271.0624217556 840783.5126079639 784761.7485790924 795176.7396306447 792308.6876187654 574962.6180152459 679403.994684348 708478.8213560068 772779.2659959783 757499.992460393 0.9191697285174049 1.1099452422132208 1.0359891173465918 1.0497382805878004 1.0459520732737069 0.7590265659907695 0.8969029722067907 0.9352855820563597 1.02017065833355 1.0 19.530886348662857 LKAEAELLQQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKAEAELLQQQK 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 144.57 0.0003069 536640000.0 1120670.0 976610.0 917010.0 913190.0 852980.0 1216270.0 1180760.0 1092710.0 1533920.0 1238420.0 False True 1114636.4372381417 1009115.8734767892 1046117.037206195 1028799.7603685203 961601.9469914411 1132192.1176916151 1123642.1278587698 1174253.5688689505 1155905.9694749394 1159382.9753352962 0.9614048687542494 0.870390453322769 0.9023049841694074 0.8873683521797351 0.8294083727711661 0.976547130480489 0.9691725269070903 1.0128262997214994 0.9970009859258531 1.0 20.144925775316036 2.5869305782467777 6.14972200499951 0.9939148231889537 0.8898049980196704 0.712556491867876 0.03219529819411518 0.12610650803071785 6.112600342145778 0.010391694227974223 0.00975341637178932 386.3052214241851 -2.5869305782467777 -0.10410982516928335 LKAEATEAAR ddPTM_BT-474_Trastuzumab_2h_R1 6 LKAEATEAAR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;; 174.24 2.8874e-06 3528920000.0 3492450.0 3738650.0 3538040.0 3304210.0 3075320.0 3856690.0 3865340.0 3396480.0 4777340.0 3793630.0 False True 3473647.037247672 3863088.705188352 4036165.278805029 3722522.6472117193 3466943.7731502703 3590086.097971727 3678358.7371672597 3649942.584575976 3600028.5700762835 3551517.2855099565 0.9780740900290724 1.0877291012913253 1.1364622369353 1.048149944926203 0.9761866533200493 1.010859812683196 1.0357147217542235 1.02771359144656 1.0136593125322102 1.0 21.760004076370848 3.47206709671399 24.88634432020223 1.0146022743023482 1.0732614643846936 0.2959873135529242 0.03947886779820242 155.03769653822258 763390.6111627781 0.011044907661496657 0.015006636841487484 2965.289479184289 -3.47206709671399 0.058659190082345436 LKAEGSEIR ddPTM_BT-474_Trastuzumab_2h_R1 5 LKAEGSEIR 9 1 P07237;H7BZ94;I3L3U6;I3L0S0;I3NI03;I3L514 P07237 P4HB Protein disulfide-isomerase 0 ;;;; 131.82 0.00029406 7523000000.0 11111700.0 14775000.0 13738100.0 12246000.0 11611200.0 13613000.0 15445300.0 12900600.0 19369900.0 13458100.0 False True 11051875.84182592 15266776.943323888 15672305.066294178 13796342.344389327 13089817.495025702 12671965.351555128 14698151.832224194 13863308.279919446 14596447.688362276 12599192.535940899 0.8771892175073085 1.2117266165885905 1.2439134509284473 1.0950179787342242 1.0389409843277837 1.005775990438009 1.1665947472662022 1.100333076137418 1.1585224725095626 1.0 23.586827940657194 4.753625153629367 24.451180693922158 1.1160837971409683 0.8771889844264354 0.4467291864381491 0.07882036674552334 1938.7772759226568 3146748.885381103 0.019368304832219 0.43529310064382487 56705.49601095913 -4.753625153629367 -0.23889481271453283 LKAEQEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 LKAEQEAR 8 1 Q8N5G2;Q8N5G2-2;Q8N5G2-3 Q8N5G2 TMEM57 Macoilin 0 ;; 96.331 0.008223200000000002 1182400000.0 1166070.0 1196660.0 1079760.0 1011650.0 871440.0 1073810.0 1149940.0 998280.0 1445480.0 1065970.0 False True 1159792.0086825565 1236490.1047037547 1231780.8225578351 1139724.7862731894 982412.7185704486 999580.0421768463 1094313.0090026027 1072776.7227631258 1089260.8224396547 997938.8819771672 1.1621874141076833 1.2390439204592947 1.234324911879742 1.1420787453587424 0.9844417692434657 1.0016445498109339 1.0965731757384722 1.0749924089917071 1.0915105545156791 1.0 19.928591935922704 3.459251851364828 4.975574497501462 1.0493493780637582 1.2116650303858136 0.7726099860793318 0.041756529762415104 0.09020995130099656 6.122262978008032 0.012396284202343816 0.01764208376238834 2879.0675284639833 -3.459251851364828 0.16231565232205547 LKAEVDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKAEVDNR 8 1 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 0 80.23899999999998 0.02368 248290000.0 295750.0 317080.0 279980.0 284180.0 230360.0 300570.0 314690.0 249700.0 417480.0 308560.0 False True 294157.7148609141 327633.8161210921 319398.7503702144 320157.1588623679 259694.98054930786 279792.3033656742 299467.2424674585 268333.8819509084 314597.64794539334 288867.4366284936 1.018313861521277 1.1342012791232512 1.1056931653427815 1.108318620468514 0.8990109220351347 0.9685837442643606 1.0366943604397925 0.9289170322648967 1.0890727304441408 1.0 18.140048055762648 3.2640068953622134 24.99911578412563 0.9823979056731957 1.095676859300725 0.4459591327471165 0.05689569751396277 187.78458204390716 184483.3839916683 0.015107799502318971 0.020448582509506912 1836.5675025897262 -3.2640068953622134 0.11327895362752916 LKAIEPNDYTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKAIEPNDYTGK 12 1 O75223;M0QZK8;O75223-3 O75223 GGCT Gamma-glutamylcyclotransferase 0 ; 155.66 6.6146e-05 1297880000.0 1581170.0 1602970.0 1614050.0 1479520.0 1581810.0 2128300.0 2134080.0 1926470.0 2771000.0 2138200.0 False True 1572657.1564045039 1656323.887434171 1841294.2104259045 1666827.0803013965 1783244.1273775827 1981175.6304793044 2030846.3974227128 2070232.9738164428 2088124.179497664 2001738.245394882 0.7856457556438736 0.8274427944036353 0.9198476447467152 0.8326898305190659 0.8908478076392066 0.989727620500391 1.0145414377203392 1.0342176248963304 1.0431554596618804 1.0 20.932821903757855 2.7548112943273675 1.7056757820625463 1.0287694145230402 0.842919952790485 0.8671644301224353 0.032922449513529455 0.12570633143967683 0.7290085963894675 0.013127115972241123 0.012949992887221873 568.605811754513 -2.7548112943273675 -0.18584946173255512 LKATVT(ph)PS(ph)PVKGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 LKAT(0.003)VT(0.997)PS(1)PVKGK 124.43 0.00040042 1747500000.0 3966100.0 2376600.0 1807000.0 2065300.0 2134000.0 4322800.0 4290400.0 3740300.0 8930800.0 4957400.0 True False 3944746.9582751333 2455703.6943149613 2061409.89327444 2326766.7682400197 2405752.2507910337 4023975.0107766474 4082856.9610803802 4019420.1788585554 6729924.006588868 4641014.487756325 0.8499751441590956 0.5291307968965551 0.4441722599041095 0.5013487405347195 0.5183677528130455 0.8670464230164509 0.8797337245663753 0.8660649927860328 1.4500976078276402 1.0 22.146008770469766 2.03990936640107 1.0382848939580085 1.1568301980652034 0.5591673375205424 0.6395294520896395 0.17483160415285115 0.3340916868298329 0.6655103437846192 0.13604014432177716 0.06564388967711299 109.62493942581153 -2.03990936640107 -0.597662860544661 LKATVT(ph)PSPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 LKAT(0.001)VT(0.587)PS(0.412)PVK 119.02 0.0010377 8446600000.0 3910600.0 3178100.0 3166500.0 2300100.0 1472200.0 2816600.0 3569700.0 2629100.0 7017200.0 3422200.0 True False 3889545.7641085074 3283881.137297981 3612315.6762886 2591292.424165436 1659675.9435869537 2621895.0715632252 3397019.9734217385 2825296.7922992944 5287905.085662582 3203792.2661071736 1.214044307821047 1.024998147363693 1.1275124528213591 0.8088203631610714 0.5180348180325602 0.8183723705497944 1.0603121835827858 0.8818601699579677 1.650514342519388 1.0 21.61134917575589 1.2690683100473727 24.999818313967236 1.3252577411846873 0.924151787585754 0.30751339897009977 0.23598681931222762 204.10862628744198 167258.96655373723 0.15878953488982278 0.057969929542418655 18.580966915734116 -1.2690683100473727 -0.4011059535989333 LKATVTPS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 LKAT(0.001)VT(0.333)PS(0.666)PVK 136.26 6.2342e-05 8255300000.0 12190000.0 10431000.0 11245000.0 6872500.0 4901800.0 8754500.0 12044000.0 8245500.0 23509000.0 11127000.0 True False 12124370.394436305 10778189.529327344 12828198.256707838 7742557.795346701 5526015.174755153 8149322.020876333 11461385.707451994 8860821.079800608 17715521.9544607 10416865.33369603 1.1639173595934769 1.0346864612392097 1.2314835457468891 0.7432713726557841 0.5304873393034886 0.7823199935699711 1.1002720434886677 0.8506226005570028 1.7006576726258797 1.0 23.312417868132776 1.2654864157200798 24.99993269006731 1.3503294961532895 0.923742814837603 0.30198865161057453 0.25571214218207855 225.68466460174568 209543.08149224296 0.17227929857996493 0.06287462236238835 18.428348461107994 -1.2654864157200798 -0.42658668131568644 LKATVTPS(ph)PVKGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 LKAT(0.002)VT(0.056)PS(0.942)PVKGK;LKAT(0.001)VT(0.091)PS(0.908)PVKGK 175.8 1.3897e-05 19407900000.0 4661290.0 4058320.0 3795290.0 3747230.0 3618730.0 5675710.0 6128730.0 4687950.0 10177700.0 6208080.0 True False 4636194.132558007 4193398.7278937553 4329633.842747948 4221628.933787848 4079553.8156068614 5283361.526884229 5832259.915877804 5037788.63392776 7669542.209192853 5811875.019395314 0.7977105696674756 0.7215225230927367 0.7449633428625272 0.7263798549864686 0.7019341954175936 0.9090631696746168 1.0035074560988428 0.8668095265496447 1.3196330243851007 1.0 22.47057224840689 2.126420078009956 0.9856362817860479 1.0933785998245427 0.7336851425700299 0.6466064792440387 0.10788769232422762 0.35061659916147764 0.6359055616744697 0.08098599483097794 0.041982816842952846 133.78889845573212 -2.126420078009956 -0.35969345725451274 LKCGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKCGSGPVHISGQHLVAVEEDAESEDEEEEDVK 33 1 P06748;P06748-3;P06748-2;E5RI98 P06748 NPM1 Nucleophosmin 1 LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK 251.28 1.2219999999999995e-48 854952000.0 52079.0 117267.0 148977.0 128240.0 163417.0 179342.0 209258.0 152067.0 312360.0 212733.0 True False 51798.61245052088 121170.16120560159 169951.66666870276 144475.17085125644 184227.18630155484 166944.50966565794 199135.39109681116 163415.01172057973 235383.0634095599 199156.19781011555 0.26009038644083776 0.6084177270803827 0.8533586628860143 0.7254364787030406 0.9250386798266017 0.8382591729574508 0.9998955256550729 0.8205369128225019 1.1819017735716397 1.0 17.60354085200878 4.694124358853352 0.9046095941805969 0.9360619713787899 7.53850830702112e-34 0.7825539171174372 0.11185697936495648 0.9315051745179971 0.6263224839809332 0.035192900431239224 0.8521536303995677 49445.22515582931 -4.694124358853352 -0.9360619713787899 down LKDALLDHDLALPLCLLMAQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDALLDHDLALPLCLLMAQQR 22 1 Q8NI27;A0A0C4DG98 Q8NI27 THOC2 THO complex subunit 2 0 ; 174.7 1.3943e-12 247890000.0 229520.0 255960.0 256910.0 243750.0 215934.0 310880.0 288950.0 271000.0 351050.0 311520.0 False True 228284.28982206935 264479.4738689126 293080.69489824894 274608.7250077496 243431.91495890872 289389.59733280423 274972.38460380724 291223.39611011656 264538.4313289989 291638.52689431014 0.7827645141850536 0.9068742620715542 1.0049450531083688 0.9416064740556994 0.8347042400441437 0.9922886403745932 0.9428534272615404 0.9985765571215355 0.907076421438885 1.0 18.15382179385418 4.675148149722971 3.2978436084184506 0.95172695836367 0.7704516855328064 0.5092145753606097 0.050130740328509206 0.21829381964026598 3.8977769821460204 0.01208427855808715 0.09076522163565193 47331.26913265234 -4.675148149722971 -0.18127527283086364 LKDDEVAQLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDDEVAQLKK 11 2 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 139.46 2.1967e-05 477210000.0 2047700.0 1401200.0 1230000.0 1081200.0 1231500.0 1826800.0 1789500.0 1691300.0 3322200.0 2022900.0 False True 2036675.4107208569 1447838.0949567135 1403173.3086483455 1218079.8091420678 1388324.225327628 1700517.6158246475 1702935.048446145 1817513.3942473833 2503488.3251992576 1893796.7901081792 1.0754455923460067 0.7645160782398458 0.7409312952569701 0.6431945684481214 0.7330903888839746 0.8979409114573 0.8992174119953326 0.9597193340598923 1.3219413710466006 1.0 20.852850103070484 1.6424797028351772 1.822784230824289 1.1529782183735242 0.7974259342422646 0.4861804921721319 0.13595336682464995 0.26056875685522735 1.7843667522099615 0.10530460996915196 0.03905986467225616 43.90153473625269 -1.6424797028351772 -0.3555522841312596 LKDEIAEVANEIENLGSTEER ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDEIAEVANEIENLGSTEER 21 1 K7ENQ8;Q15438-2;Q15438;K7ERV8 K7ENQ8 CYTH1 Cytohesin-1 0 106.03 0.00034355 18237000.0 22563.0 23971.0 18268.0 20714.0 19649.0 23050.0 23368.0 23639.0 29378.0 26105.0 False True 22441.52331498496 24768.860244224496 20839.975611697526 23336.390276145736 22151.18368125259 21456.60775386364 22237.600565571112 25403.06221640977 22138.185545031556 24438.956550385068 0.9182684730715871 1.0134990908126242 0.8527359001081887 0.954884887496477 0.9063882754398354 0.8779674250669086 0.9099243054720653 1.0394495429474264 0.9058564140981191 1.0 14.576895068481813 1.7677323025492973 24.999999999999286 0.985003494895458 0.9194799878223888 0.24020453395890673 0.05097927675035187 29.730726154924582 25493.497102361125 0.02263661659078435 0.01255513326280765 58.577698252756285 -1.7677323025492973 -0.0655235070730692 LKDELASTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDELASTK 9 1 P51572;P51572-2 P51572 BCAP31 B-cell receptor-associated protein 31 0 73.781 0.03354 0.0 557160.0 606240.0 569120.0 490570.0 532060.0 687400.0 586820.0 433550.0 764010.0 609000.0 False True 554160.3124662949 626418.3319201812 649247.1491202813 552676.1117007249 599814.687233307 639881.6559655481 558433.2747299054 465903.70252229215 575729.9727094953 570133.0986088678 0.9719841100586042 1.0987229709144233 1.1387641775305675 0.969380856942461 1.0520608059712069 1.1223373235598277 0.9794787850284256 0.8171840990447726 1.0098167850880504 1.0 19.12093923281494 2.0088046612280386 11.502280390608252 0.9160909526927362 1.059219442870407 0.33308928295530904 0.07294650070573926 0.2855765353588147 361.5629380251236 0.0270734061531131 0.019652148435225825 102.04803845710101 -2.0088046612280386 0.1431284901776707 LKDEVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDEVVR 7 1 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 111.95 0.0058957 238010000.0 483380.0 537480.0 459370.0 452460.0 439360.0 583220.0 550380.0 530360.0 691490.0 590120.0 False True 480777.53578856646 555369.6968864786 524045.3030843823 509741.3896082305 495309.8917092538 542903.374152206 523756.0167442232 569938.1563135113 521081.5549912817 552458.0363728498 0.8702516827252618 1.0052703740771791 0.9485703321920871 0.9226789295254451 0.8965565872861568 0.9827051801375273 0.948046697235017 1.0316406293144484 0.943205674791936 1.0 19.075505358821413 2.330211302004438 2.034673108900594 0.9909891709950184 0.9348240841290435 0.25626910642905154 0.04141731630719493 0.4376042681300343 3.7062092574711474 0.01807150054533182 0.012990780061005 213.90025484773588 -2.330211302004438 -0.05616508686597488 LKDHMLIPVSMSELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDHMLIPVSMSELEK 16 1 O94760;B4DYP1;O94760-2 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 0 146.78 6.557300000000001e-07 191130000.0 470560.0 420750.0 400810.0 335840.0 370050.0 531310.0 498560.0 426830.0 693540.0 503810.0 False True 468026.5572441308 434754.4094012541 457240.5640970265 378357.3095655489 417173.67404180975 494581.79026921076 474442.748115848 458682.22199882317 522626.35995987384 471656.41446655814 0.9923040223537876 0.9217608328150481 0.9694356952913787 0.8021884108021086 0.8844863787416775 1.0486060935449826 1.005907549571739 0.972492280249366 1.1080658376096983 1.0 18.84737676273649 2.7393920709482877 24.997314092747544 1.019183740677241 0.9113283849077309 0.48024647737501935 0.058450361644458035 73.12752746114701 2198574.458111945 0.01888377133371161 0.018996720322326483 548.7721600931075 -2.7393920709482877 -0.10785535576951011 LKDINK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDINK 6 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 65.038 0.095851 621220000.0 1070500.0 1078500.0 945590.0 846580.0 877850.0 1098900.0 1157700.0 1001100.0 1653700.0 1224400.0 False True 1064736.5469437311 1114397.2205329833 1078720.85278438 953756.9411981968 989638.9940754025 1022935.6295323533 1101697.628156524 1075807.1654827977 1246167.7934447085 1146257.743738422 0.9288805704999502 0.9722047476848198 0.9410805367963962 0.8320615031027837 0.8633651545487311 0.8924132771362014 0.9611255707319638 0.9385386239347394 1.0871619408916169 1.0 20.12850004954824 1.4234092777099199 2.9923217916881 1.0421925148233424 0.9112503645194637 0.5447021697881784 0.04607502701512186 0.19806283727116053 3.1562457142369458 0.03890352066007453 0.012882318642958114 26.509972529910815 -1.4234092777099199 -0.13094215030387868 LKDISTLEPLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDISTLEPLKK 12 2 Q92688;Q92688-2 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 0 ; 138.21 4.4099e-05 2019230000.0 2360860.0 2182660.0 1994720.0 1840460.0 1914010.0 2678700.0 2576730.0 2582380.0 4121300.0 2640330.0 False True 2348149.3920762027 2255308.5186541686 2275559.2375829504 2073462.0472933827 2157747.828273918 2493527.7739815433 2452083.7258355003 2775090.3086599363 3105660.8375906595 2471821.878899758 0.9499670717055859 0.9124073776942363 0.9206000064194888 0.8388395883186814 0.8729382350294436 1.0087813346370438 0.9920147348671241 1.1226902441268005 1.2564258226296758 1.0 21.23714335476442 2.071300578748196 1.5320869140864273 1.1412049586705904 0.9019941454137463 0.6479860624257312 0.06969144118810337 0.2268750566087664 1.0051052389506658 0.043048987089214744 0.022045386451816223 117.84212863162927 -2.071300578748196 -0.239210813256844 LKDLDLDAFAEELER ddPTM_BT-474_Trastuzumab_2h_R1 4 LKDLDLDAFAEELER 15 1 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ;;; 204.13 4.6132e-09 463553000.0 770354.0 854755.0 779859.0 759728.0 753969.0 911304.0 918694.0 845084.0 1173850.0 940692.0 False True 766206.4996583764 883205.0034646906 889656.368544057 855909.4869033337 849982.4830256167 848307.69945887 874253.2614681097 908148.4593296004 884570.3962841333 880656.2311930605 0.8700404000098491 1.002894173891414 1.0102198077208897 0.97189965458349 0.9651694417401796 0.9632676967602141 0.9927293199114977 1.0312178886184624 1.00444460046092 1.0 19.74821943984875 2.0274163907007523 4.340955762178795 1.014912962586806 0.9684638954866696 0.256556069434021 0.036441670191949625 0.2863863248601284 12.559263447710869 0.015018691531361431 0.010090775505541523 106.51637812311787 -2.0274163907007523 -0.04644906710013652 LKDLEDKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDLEDKEK 9 2 Q5VTR2 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 0 62.303 0.046967 157330000.0 254170.0 195030.0 196120.0 165880.0 152870.0 237350.0 252920.0 205290.0 399930.0 228900.0 False True 252801.57696094157 201521.4556518753 223731.99129440088 186880.3909919406 172337.08836852174 220942.55316180227 240685.29335177358 220609.7822414979 301372.6102874417 214291.40602885064 1.1797093576720767 0.9404084810790028 1.044054894409901 0.8720853274292315 0.8042183844989076 1.031037862209258 1.1231682026453709 1.029484972494868 1.4063681594719066 1.0 17.709214467576935 2.0007908809694426 1.6034509669301635 1.1638395606965262 0.9664965313944115 0.24353023784076178 0.1391827576492671 0.538496505357502 2.584336666711816 0.08916959783948976 0.04344438492258229 100.18227298868682 -2.0007908809694426 -0.19734302930211467 LKDLFDYS(ph)PPLHK ddPTM_BT-474_Trastuzumab_2h_R1 11 LKDLFDYSPPLHK 13 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDY(0.003)S(0.997)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDY(0.01)S(0.99)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK 147.17 2.5755e-05 110086259000.0 6898456.0 7730180.0 5652471.0 7607378.0 5608210.0 7687729.0 7256857.0 7032059.0 10401304.0 7973927.0 True False 6861315.479386516 7987474.368307512 6448289.784641319 8570471.27479797 6322382.301035042 7156294.3891974995 6905815.103024159 7556826.950652064 7838041.999532951 7465024.15203764 0.9191283698008751 1.0699864066919682 0.8638002574822488 1.1480835293022582 0.846933937823804 0.9586431662440275 0.9250894521405078 1.0122977229202086 1.0499687395376334 1.0 22.83171549732881 1.5750995919855866 6.4499715807125195 1.02667416990523 0.9647019160331952 0.09069613871961724 0.0858589205411401 0.3118743671980426 26.40796087115054 0.043563197566861084 0.0203456014827891 37.5923600837075 -1.5750995919855866 -0.061972253872034755 LKDLFDYSPPLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDLFDYSPPLHK 13 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 145.29 2.5072e-05 1051340000.0 2452580.0 2589050.0 2217840.0 2229830.0 2306440.0 2689440.0 2591100.0 2361350.0 3386800.0 2666640.0 False True 2439375.581787253 2675224.964136224 2530092.5941891414 2512126.249370381 2600151.462659078 2503525.343060784 2465758.594036774 2537565.9276923416 2552168.520794906 2496452.752174636 0.9771366911159589 1.0716104928506502 1.0134750565518222 1.00627830716287 1.0415384230260762 1.0028330561754022 0.9877048912257103 1.0164686375425662 1.0223179744025745 1.0 21.251448171826997 2.693908645220735 24.974100066584032 1.0061501406105537 1.02341561684474 0.0973894259941328 0.024376932648430993 1003.9266194939048 561499.8389952261 0.007534770412854925 0.007103851353199866 494.2067186049915 -2.693908645220735 0.017265476234186172 LKDLFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDLFGK 7 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;Q9H361;H0YBN4;H0YAP2 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ; 117.04 0.004853100000000001 3259500000.0 5061000.0 5010900.0 4719100.0 4270900.0 4427500.0 5798000.0 5679400.0 5432100.0 7948100.0 6094200.0 False True 5033752.138329957 5177684.777346978 5383508.260847476 4811595.502094757 4991315.881151503 5397197.907023918 5404665.724585102 5837470.885644887 5989397.254083512 5705262.93849289 0.8822997629728314 0.9075278095271665 0.9436038827457777 0.8433608676703328 0.8748616733289448 0.9460033595663951 0.9473122944291162 1.0231729805580039 1.0498021421017414 1.0 22.443861946866754 2.0389559980506107 1.5367720736081099 1.0304097372878414 0.8936959820594009 0.7865300436408826 0.029443348706079595 0.17640291776309758 0.781393048742765 0.019506883658213334 0.009716465570121912 109.38455341611348 -2.0389559980506107 -0.13671375522844043 LKDLGHPVEEEDELES(ph)GDQEDEDDES(ph)EDPGKDLDHI ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 36 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 2 LKDLGHPVEEEDELES(1)GDQEDEDDES(1)EDPGKDLDHI 113.88 6.0453e-06 86402000.0 33112.0 21926.0 21878.0 19698.0 21146.0 26033.0 25709.0 25285.0 37450.0 29039.0 True False 32933.728671089055 22655.793655453097 24958.232233015013 22191.76478031857 23838.81775783842 24233.399985090342 24465.35745208264 27171.895094628428 28220.949304289985 27185.706158461293 1.2114354682980617 0.8333715344157686 0.9180645184472062 0.8163026794656791 0.8768879358470817 0.8914022627860975 0.8999345946534492 0.9994919733277347 1.038080421372703 1.0 14.730560682692953 1.6539627701969724 4.31207167927876 1.0186639801214494 0.9107003861697898 0.13596521278121732 0.103848704705651 0.2938301510838961 12.608620156650847 0.05634438875081592 0.02622381146397305 45.07780600307952 -1.6539627701969724 -0.10796359395165966 LKDLGHPVEEEDELES(ph)GDQEDEDDESEDPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 LKDLGHPVEEEDELESGDQEDEDDESEDPGK 31 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGK;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGK;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGK 269.16 9.709899999999997e-60 1057370000.0 815320.0 509440.0 450565.0 434141.0 459800.0 652490.0 546050.0 614150.0 882860.0 594200.0 True False 810930.407710568 526396.402437017 514000.6356188137 489103.206086521 518352.8045518826 607384.9020962474 519635.4753864307 659980.9915905094 665290.9827179026 556277.6472797863 1.4577799623552035 0.9462835780138039 0.9240001609489282 0.8792429616366031 0.9318238960106392 1.0918736445125508 0.9341297065008151 1.186423712723018 1.1959692897444194 1.0 19.085445609856663 1.7141966263638977 10.021363279420779 1.1418046796957724 1.0103980022281558 0.0707071624564829 0.1651261996649504 0.2392011458071017 59.70623433267531 0.07734986253950556 0.041815268867891484 51.78412309501164 -1.7141966263638977 -0.13140667746761658 LKDLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_BT-474_Trastuzumab_2h_R1 8 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 36 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI 333.34 2.410499999999999e-129 39289610000.0 2803034.0 1884376.0 1623500.0 1487020.0 1697927.0 2289534.0 2160492.0 1951780.0 3556789.0 2244558.0 True False 2787942.7763903528 1947096.316030655 1852074.6882850286 1675276.579532404 1914147.939048203 2131263.9035633146 2055980.7480790738 2097431.734538023 2680266.00948081 2101308.3867772142 1.3267651687557545 0.9266114047243323 0.8813911846254816 0.7972540299531108 0.9109314706462196 1.014255649943911 0.9784288498616523 0.99815512455783 1.2755224441813346 1.0 21.002856475945006 1.4063985808201882 7.98576357409838 1.1397569447369422 0.966086294908155 0.15878678811462743 0.1452091322984189 0.4092664635563233 38.672959855829326 0.0946927256967519 0.035329659648212886 25.49168720367139 -1.4063985808201882 -0.17367064982878722 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI ddPTM_BT-474_Trastuzumab_2h_R1 3 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 36 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;; 241.41 5.5441999999999995e-50 1307560000.0 344564.0 298999.0 260566.0 228172.0 235644.0 358835.0 328169.0 280197.0 502090.0 326221.0 False True 342708.90570865886 308951.0009662876 297251.42791972763 257058.5518049979 265651.8666285858 334029.58105673135 312294.21174267837 301106.7229515361 378356.64716130716 305401.2964881503 1.1221593020380518 1.0116230825440358 0.9733142306134941 0.8417074673910949 0.8698452484758629 1.0937398920626122 1.022570026171436 0.9859379328575286 1.2388835656956274 1.0 18.22034666110679 2.716918300977636 24.931077574998245 1.056783007927036 0.9601440314478749 0.21827154713461683 0.09756735155577669 1399.585332545688 1612264.1242916654 0.03302159471691195 0.031159950573961252 521.0966737243903 -2.716918300977636 -0.09663897647916109 LKDLPFIVSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKDLPFIVSHR 11 1 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 141.38 2.2924e-05 259490000.0 539550.0 587940.0 506300.0 521870.0 552520.0 666150.0 645820.0 569620.0 793320.0 646600.0 False True 536645.1227496405 607509.2274827642 577582.6391615096 587938.6884914632 622880.1469573864 620100.6184484285 614579.219328019 612127.9368717519 597816.9159433731 605333.4344178884 0.8865281384394351 1.0035943712029851 0.9541561828927142 0.9712641910434823 1.028986855081566 1.0243951237300162 1.0152738711996334 1.011224396452506 0.9875828460033048 1.0 19.20737051214733 6.259198779160538 0.7321038179600375 1.0086672635967204 1.8605884705708548e-11 0.6733341137644551 0.023143238886005623 13.231175629814839 0.9093358744512584 0.008393181565223598 17.92894350716679 1816346.82526085 -6.259198779160538 -1.0086672635781146 LKDLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKDLSR 6 1 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 129.4 0.014785 7736350000.0 11916840.0 13887920.0 13670840.0 11625670.0 10328020.0 13943580.0 14403130.0 12248800.0 18885360.0 14231290.0 False True 11852681.057525394 14350171.021775074 15595575.442928564 13097478.629993213 11643232.128029427 12979693.134256763 13706395.576600226 13162867.654146109 14231316.078858906 13323036.888179637 0.889638087547535 1.0770945950398683 1.1705721130867055 0.9830700567686229 0.8739172777011107 0.9742293174743445 1.0287741219691968 0.987978023675996 1.0681735852195309 1.0 23.66741963582008 LKDNEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LKDNEK 6 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;H0Y400;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ;;; 97.602 0.037288 2357500000.0 4299810.0 2961490.0 2536820.0 2192410.0 2531710.0 1980280.0 2996100.0 3128460.0 5067320.0 3472010.0 False True 4276660.3007138055 3060061.404391488 2893982.2055652803 2469968.881207139 2854108.261879177 1843387.9046777042 2851167.196786528 3361921.571197989 3818546.8846092075 3250423.3492626883 1.3157240891971516 0.9414347226756228 0.8903400863834363 0.7598914405310976 0.878072778589469 0.5671224042541567 0.8771679533477613 1.0343026768991777 1.1747844739902542 1.0 21.632196202574757 1.6418359439629646 4.031171087817249 1.0905831381159103 0.8741997065423006 0.17285995496406115 0.17968980943082927 0.28521806858315 10.780620903201422 0.1071893484011939 0.048759929590832175 43.83650727793962 -1.6418359439629646 -0.21638343157360973 LKDPANFQYPAESVLAYK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDPANFQYPAESVLAYK 18 1 P15559-2;P15559;B4DLR8;P15559-3;H3BNV2;H3BRK3 P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 ; 146.64 7.5125e-08 2911700000.0 3413600.0 2987800.0 2997100.0 2662100.0 2725100.0 3270400.0 3704300.0 3232200.0 4420200.0 3443600.0 False True 3395221.5568866148 3087247.1168367565 3419065.6287397956 2999121.587048739 3072125.332066847 3044324.945693519 3525108.857199802 3473403.176779035 3330900.937645462 3223826.49978571 1.0531650996454982 0.9576343879057908 1.060561301598291 0.9302986954316843 0.9529437555870495 0.9443203428893823 1.0934548920154723 1.0774162868286845 1.0332134616632964 1.0 21.62034267217449 2.2364265994667734 24.9999901751677 1.060894436526966 0.9817367669481626 0.3205536902951781 0.04751702403989582 57.90616771709124 678355.9476130153 0.017088007850367848 0.013239814558793627 172.35607657259501 -2.2364265994667734 -0.07915766957880332 LKDSEAELQR ddPTM_BT-474_Trastuzumab_2h_R1 8 LKDSEAELQR 10 1 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7EPK1 SEPT7;DKFZp586I031 Septin-7 0 ;;;;;;; 144.17 2.98e-05 8323020000.0 9323560.0 9479480.0 8684880.0 8338860.0 8192860.0 10784960.0 10666430.0 9496280.0 13377430.0 10385080.0 False True 9273362.988904906 9794998.761333331 9907635.613669775 9394558.820997424 9236172.15811427 10039421.100265047 10150454.031180432 10204940.634732775 10080741.624878177 9722295.303285703 0.9538244519039576 1.0074780137590613 1.0190634314842746 0.9662902152151748 0.9499991380628867 1.0326184082139707 1.0440388524045376 1.0496431466429497 1.0368684873695757 1.0 23.212865524281327 2.624098144972189 7.047572338457848 1.0383150325292718 0.982486057528187 0.5463395152070173 0.02396258918013273 0.19594544096155006 10.833937563414313 0.007996056334069551 0.0075255072940358 420.82171794019 -2.624098144972189 -0.05582897500108486 LKDSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDSEK 6 1 O00148;O00148-2;C9JGA2;Q9H6S1-3;Q9H6S1-5;C9JVK8;Q9H6S1-4;Q5VT25-2;H0Y5V1;A0A0A0MRJ1;A0A0A0MRJ0;Q5VT25;Q5VT25-4;H0Y6V3;Q5VT25-3;Q5VT25-5;Q5VT25-6;H0Y7V8;Q9H6S1 O00148;Q5VT25-2;Q5VT25-3;Q9H6S1 DDX39A;AZI2;CDC42BPA ATP-dependent RNA helicase DDX39A;5-azacytidine-induced protein 2;Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 0 ; 75.109 0.071644 1007030000.0 1880140.0 1415570.0 1248430.0 1135700.0 1208450.0 974740.0 1450150.0 1555630.0 2454200.0 1678720.0 False True 1870017.535143191 1462686.3917198656 1424198.0924519112 1279479.5035540566 1362338.9444556802 907358.5180911511 1380000.704389033 1671719.0099290803 1849395.294595152 1571582.6523755 1.189894487774217 0.9307091736530472 0.9062190208699414 0.8141344024255297 0.8668579679194468 0.5773533556887055 0.8780961677727325 1.063716889087711 1.1767725304168564 1.0 20.58378671739887 0.021833601257333496 7.351851537315869 0.9999999999999861 0.9245270105417681 0.010788307567009103 0.17087789146717616 23945141.113258522 176255471.55184686 0.17328920676452958 0.043322304868836446 1.0515588947141612 -0.021833601257333496 -0.07547298945821801 LKDVLLQVDDER ddPTM_BT-474_Trastuzumab_2h_R1 3 LKDVLLQVDDER 12 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;; 140.1 5.4165e-05 1622070000.0 2196990.0 2217830.0 2092350.0 1860570.0 1872280.0 2457870.0 2474400.0 2172990.0 3075530.0 2601300.0 False True 2185161.6499485364 2291649.1308434554 2386934.692967774 2096117.9712314624 2110703.7601270108 2287963.2321036374 2354703.8188740634 2335149.548019643 2317606.8414906026 2435282.8069150224 0.8972927676998075 0.9410197141524109 0.9801468175236308 0.8607287684532998 0.8667181298753621 0.9395061738238085 0.9669118560636351 0.9588822872600055 0.9516787269674483 1.0 21.21565789006808 2.476359177229015 6.294966214809079 0.9640595194478238 0.9112681762279173 0.4006110022409163 0.034424192124422985 0.18095509392920195 32.43675602590464 0.012541506421008694 0.010941275968547664 299.4740371202847 -2.476359177229015 -0.05279134321990642 LKDVLLQVDDERR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKDVLLQVDDERR 13 2 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;; 175.15 1.0549e-05 3799750000.0 2929680.0 3465050.0 3053510.0 3225590.0 3047150.0 3453570.0 3652620.0 3211600.0 4286730.0 3702360.0 False True 2913906.9283980504 3580382.0945830448 3483417.6664152886 3633949.3632728048 3435186.4906269396 3214832.834729319 3475928.8162365747 3451265.90017436 3230322.8307390967 3466072.2150501353 0.8406942347437218 1.0329796589455238 1.0050043537148006 1.0484344058077397 0.991089128411957 0.9275146723054695 1.002843737976272 0.9957282151215764 0.9319837067192702 1.0 21.72487028245162 4.747850605578042 24.877985226871967 0.9933047748067779 0.8406941490071154 0.6160143399903361 0.03603535209983851 802.3926334499592 2148707.2542137615 0.008739212024921391 0.11106098877678872 55956.50817066246 -4.747850605578042 -0.15261062579966256 LKDYAFIHFDER ddPTM_BT-474_Trastuzumab_2h_R1 5 LKDYAFIHFDER 12 1 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;; 154.65 3.6376e-05 6574157000.0 5286810.0 6417863.0 6501021.0 6258592.0 5764128.0 6610641.0 6944975.0 5829914.0 9231019.0 6917426.0 False True 5258346.402379814 6631477.690274889 7416308.248912495 7050929.105492105 6498155.534136654 6153662.947445077 6609020.026869102 6264971.786383445 6956158.056767369 6475949.950373643 0.8119807044025136 1.0240162047410932 1.1452077773523552 1.0887868435557144 1.0034289307257123 0.9502332467980282 1.0205483485071996 0.9674212794096679 1.0741525351606553 1.0 22.626660405084053 4.737458043871488 7.494007184079801 1.0283353656675671 0.8096595613446925 0.5829110055361754 0.055417359972260924 0.07569904832194972 41.79839323771906 0.014471934770330758 0.08515027951853012 54633.37673622359 -4.737458043871488 -0.2186758043228746 LKDYAFVHFEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKDYAFVHFEDR 12 1 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ; 182.02 1.0466e-05 4482300000.0 5223800.0 6339000.0 6426300.0 5533400.0 5324100.0 6693700.0 6665500.0 5950600.0 8524700.0 6690200.0 False True 5195675.641218737 6549989.782993573 7331067.181599063 6233927.872647723 6002092.576586945 6230980.27427492 6343064.30031728 6394663.988534541 6423901.910127657 6263225.708231605 0.8295526751319511 1.045785364941436 1.1704938514293075 0.9953222449662997 0.9583069262055399 0.9948516251115931 1.012747200213581 1.0209857166939058 1.0256539057318148 1.0 22.57847443968934 4.742237277889058 24.70226978149049 1.0253823621713967 0.8295525863474837 0.5453545307632846 0.05350868678120728 245.32961820908872 1648207.0674370644 0.013557687578528925 0.09972929468169642 55237.915059946376 -4.742237277889058 -0.19582977582391292 LKEAELLEPLMPAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEAELLEPLMPAIR 15 1 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 ; 106.36 0.0011334 417370000.0 993620.0 1058160.0 1024620.0 963230.0 1048430.0 1105590.0 1117940.0 1057650.0 1514750.0 1149140.0 False True 988270.4603215597 1093380.215928772 1168877.589843306 1085174.8192378026 1181941.345968529 1029163.1655789195 1063860.9712544745 1136577.213637878 1141460.1591100998 1075800.9013717482 0.9186369513740146 1.016340676545826 1.086518507609425 1.0087134318758255 1.0986617918440502 0.9566483577645629 0.9889013570242885 1.056494015006526 1.0610329082775725 1.0 20.036979672142845 4.718187131347011 4.262399766318778 1.0329370319808624 0.9118097848589809 0.3875831397771796 0.04244478913274518 0.19375253125825725 7.989756075499479 0.010043631799230545 0.06847513790406237 52262.13306267719 -4.718187131347011 -0.1211272471218815 LKEAETR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEAETR 7 1 P06753-2;P06753-6;P06753-5;P06753-7;A0A494C034;A0A2R8Y6A3;A0A494C0I0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A5F9UN72;K7EPB9;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ; 128.69 0.003405 1978950000.0 2809700.0 3013300.0 2690500.0 2542800.0 2513100.0 2960800.0 3198500.0 2875600.0 3927600.0 3185300.0 False True 2794572.8873870196 3113595.8689216864 3069299.0137547757 2864718.219280843 2833128.3886892893 2756126.8649735106 3043776.3355434393 3090191.8740009284 2959695.6071436442 2982011.4269274673 0.9371435877649952 1.0441260690036316 1.0292713790561312 0.9606664124129538 0.9500729484488997 0.9242509401827819 1.0207124989724172 1.0362776769051236 0.9925165210359987 1.0 21.50785435529563 LKEDILENEDEQNS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 6 LKEDILENEDEQNSPPK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK 264.54 1.0744e-27 4782610000.0 7802900.0 5230170.0 4797150.0 4101480.0 4244050.0 8218460.0 7420970.0 7248920.0 12515730.0 7662040.0 True False 7760890.053383691 5404253.046745469 5472547.022424716 4620726.947465785 4784504.611044841 7650337.204373887 7061989.330241625 7789871.219669923 9431396.043689745 7173042.047397522 1.081952399289148 0.7534115945557862 0.762932516812756 0.6441795429238071 0.6670119287507488 1.0665401309266733 0.9845180445866495 1.0859926887639249 1.31483908519839 1.0 22.774153657001897 2.718451293196259 18.017726671687655 1.085970129049324 0.7716108967541788 0.5497367333553763 0.13940587951855155 17.835592395439313 15979.596045420405 0.0459122064658351 0.043461884867971375 522.93931443326 -2.718451293196259 -0.3143592322951452 LKEDILENEDEQNS(ph)PPKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEDILENEDEQNSPPKK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK 149.85 3.0857e-08 481530000.0 380077.0 256007.0 220567.0 190154.0 210106.0 385151.0 387277.0 361977.0 647860.0 360529.0 True False 378030.70766252413 264528.03823550063 251620.9163972677 214227.47690307107 236861.75370417078 358526.4179179323 368542.9319681909 388989.5618219621 488203.5838792345 337519.73055559373 1.1200255079614012 0.7837409617507666 0.7454998733942831 0.6347109739345597 0.7017715773660724 1.062238398116043 1.091915223330884 1.1524942887980016 1.446444576960283 1.0 18.36461231539344 2.5327700973950993 2.888455749251789 1.1778705357930037 0.7853340181947959 0.5513296641093108 0.16081321742630578 0.20219228072115825 3.354253256457397 0.05902422276713167 0.05234837615848886 341.0123420225408 -2.5327700973950993 -0.39253651759820785 LKEDKAPQVDVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEDKAPQVDVDK 13 2 P41250 P41250 GARS Glycine--tRNA ligase 0 164.09 2.1162e-05 1074200000.0 1398500.0 1109600.0 1022200.0 944400.0 848140.0 1254200.0 1272700.0 1362700.0 2430600.0 1301600.0 False True 1390970.6313879553 1146532.365232636 1166116.8748783243 1063960.9431684872 956145.6016803688 1167500.1060692319 1211134.6388138619 1464391.5936503904 1831611.198371357 1218530.7736441747 1.1415145694089257 0.9409137545240502 0.9569859868133656 0.8731506550192193 0.7846708695102472 0.95812114993015 0.9939302847410298 1.2017682485530807 1.5031308506831433 1.0 20.216711255693774 1.7154090447318882 3.1301369868510704 1.278137178605084 0.9366171809553409 0.4614870500832524 0.14133165312558274 0.1691457965042661 3.64534388446031 0.08013977320215913 0.03696329571924978 51.92889062765456 -1.7154090447318882 -0.34151999764974306 LKEDLEIEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEDLEIEHR 10 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A0A0MRE9;A0A087WX84;Q99996-4 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 0 169.58 2.7572000000000005e-06 100600000.0 302060.0 293460.0 278510.0 274320.0 255940.0 328640.0 307310.0 282770.0 430490.0 303360.0 False True 300433.74252202123 303227.6386996841 317721.78714768315 309048.8838733364 288532.4419247694 305921.89033534686 292444.2412617965 303871.73327696574 324401.5077704621 283999.30508043704 1.0578678790672726 1.0677055657365113 1.1187414245879752 1.0882029580523256 1.0159617885087726 1.0771923904838454 1.0297357635398707 1.0699735099383438 1.142261625177505 1.0 18.115527874032143 LKEDLLSHTTAELNYGLAHFVNEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEDLLSHTTAELNYGLAHFVNEIR 25 1 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 0 173.35 2.9678e-12 205740000.0 37627.0 44734.0 36797.0 37501.0 46634.0 57953.0 61787.0 43422.0 57420.0 42386.0 False True 37424.420412752705 46222.94414772594 41977.6977547424 42248.622754935845 52572.56347862658 53946.84551668809 58798.126760738676 46662.370132448305 43269.610388580295 39680.88919151968 0.9431346216090034 1.164866642091387 1.0578819832422903 1.0647095772230055 1.324883704719551 1.359517052561847 1.4817744248862397 1.175940637500146 1.0904395357608965 1.0 15.276156734352426 3.2493900158204934 24.81286037234703 1.2645316485657903 1.065323298141183 0.2786274170897687 0.13888382251072387 236.9940784165884 543009.0589982603 0.03885472878900313 0.05209235433759036 1775.7834978402661 -3.2493900158204934 -0.19920835042460716 LKEEEEDK ddPTM_BT-474_Trastuzumab_2h_R1 6 LKEEEEDK 8 1 P27797 P27797 CALR Calreticulin 0 ;;;;; 142.98 0.00055519 4395160000.0 6029340.0 3904040.0 2974960.0 2554720.0 2734710.0 4640500.0 4644950.0 4478140.0 8112000.0 3857950.0 False True 5996878.703362656 4033983.611357984 3393808.5091841323 2878147.2900586566 3082959.1086039105 4319713.157562008 4420256.023067853 4812321.546334161 6112906.295230988 3611732.328042831 1.6603884669970317 1.1169110124902217 0.9396622454087594 0.7968883152584848 0.8535956789119369 1.1960225080973337 1.223860358849781 1.3324136755566047 1.6925136582708842 1.0 21.78425954538916 2.1217421070181293 2.0280728198599127 1.3699306875409234 1.0566759460596975 0.1406348462244169 0.27284870464091154 0.5637702727152499 4.517945893341552 0.1468476025956409 0.08598058759885743 132.35553474451783 -2.1217421070181293 -0.3132547414812259 LKEEEEDKK ddPTM_BT-474_Trastuzumab_2h_R1 4 LKEEEEDKK 9 2 P27797 P27797 CALR Calreticulin 0 ;;; 112.15 0.0011303 3117510000.0 4349430.0 3061760.0 1978400.0 2040800.0 2092000.0 4200710.0 4381200.0 4057010.0 9446400.0 3702860.0 False True 4326013.152147097 3163668.8307269975 2256941.5234389305 2299165.070752061 2358403.799744538 3910324.8051077053 4169264.6181906904 4359764.687279349 7118461.295274901 3466540.304622064 1.247933897199772 0.9126300439976893 0.6510645557559704 0.6632448691528268 0.6803335869483452 1.1280194261390608 1.2027163257359677 1.2576702718460584 2.053477147167047 1.0 21.725065103813183 2.125041897623307 1.47367819112362 1.4771295215806888 0.8253485683870273 0.42930347583921147 0.29996068550028443 0.374929267434108 1.5533386496600745 0.18581748892354416 0.0989440024002485 133.3650086972646 -2.125041897623307 -0.6517809531936615 LKEEEEDKKR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKEEEEDKKR 10 3 P27797 P27797 CALR Calreticulin 0 ;;; 178.71 9.5764e-07 14083800000.0 8922400.0 6025560.0 5378380.0 4445290.0 4700280.0 8530510.0 9153060.0 8058910.0 16854400.0 7528140.0 False True 8874362.789771833 6226117.1220720615 6135609.154282996 5008063.258214144 5298832.797257765 7940815.922360588 8710291.519715259 8660306.786515795 12700858.957389187 7047687.660035081 1.2591878666949408 0.8834269369481493 0.8705847151933029 0.7105966523762228 0.7518540907119867 1.1267264250926041 1.235907710426529 1.2288153511151325 1.8021313613841345 1.0 22.748718557529234 2.3255119035748737 1.9629328702837228 1.348120036944769 0.8854082754841097 0.4183343765538461 0.23317925703205641 0.3131198727583369 2.463518713080316 0.10582072401093112 0.07493858823783488 211.5981681375465 -2.3255119035748737 -0.4627117614606593 LKEEHGIELS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEEHGIELSSPR 13 1 O14647;O14647-2 O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 1 LKEEHGIELS(0.606)S(0.394)PR 92.264 0.0037262 149730000.0 294600.0 307560.0 269860.0 269230.0 238190.0 297910.0 291630.0 245670.0 329750.0 303740.0 True False 293013.9063331373 317796.94867605384 307853.94233483134 303314.4903952262 268522.08463726175 277316.182904708 277522.74276521284 264003.14288698323 248487.5309236216 284355.0531551032 1.0304508503786325 1.1176061235764627 1.0826392530007567 1.066675225320443 0.9443197216220904 0.9752461924896557 0.9759726077870555 0.9284278227437763 0.8738636017418779 1.0 18.117333916486874 3.2643282214587774 5.271678303362347 0.9475298782098893 1.0795402110275483 0.7259760423639098 0.037513079761231805 0.09166868556357707 6.770235595874733 0.010658605644263302 0.014060066907145294 1837.9268462163268 -3.2643282214587774 0.13201033281765895 LKEEHGIELSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEEHGIELSSPR 13 1 O14647;O14647-2 O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 1 LKEEHGIELS(0.416)S(0.584)PR 97.284 0.0023309 277750000.0 292250.0 284500.0 269520.0 249210.0 227810.0 304410.0 316600.0 284230.0 356300.0 316350.0 True False 290676.55847202765 293969.4105161186 307466.07329016394 280759.9604479228 256820.25316434188 283366.8532040623 301284.8484705499 305440.68589069514 268494.63917539455 296160.2721591391 0.9814839659379945 0.992602445874836 1.0381746040702913 0.9480000757733601 0.8671664544741564 0.9568023797999404 1.0173033887160166 1.031335782020653 0.9065856038622268 1.0 18.176018600536096 -0.2205856359194105 7.827390902649716 0.9999999989700321 0.9757056834821382 0.020492997955005365 0.05170069374866767 0.0 0.0 0.05334812580404196 0.012574273933562679 0.6017475962075007 0.2205856359194105 -0.024294315487893958 LKEEIDLLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 LKEEIDLLNR 10 1 Q96IZ0;H0YHP5 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 0 ;; 176.78 2.1872e-06 1126700000.0 1872230.0 2001900.0 1768670.0 1765080.0 1844880.0 2099310.0 2034650.0 1942890.0 2738760.0 2250500.0 False True 1862150.1217043095 2068532.031325893 2017683.3624447677 1988538.9470222683 2079814.5325395316 1954189.6409441852 1936226.2063821997 2087878.3175955168 2063829.2955037965 2106871.1632500156 0.8838462238155064 0.9818028113949875 0.9576681278091687 0.9438350961882214 0.9871579092341143 0.9275316284312767 0.9190055092858253 0.9909852837772952 0.9795707167590525 1.0 21.006670664294163 LKEEISK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEEISK 7 1 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 83.948 0.019978 933220000.0 1387100.0 1242800.0 1245900.0 944620.0 1211100.0 2331200.0 1210400.0 1126800.0 1875100.0 1457800.0 False True 1379632.0077212972 1284165.8467115355 1421311.8904430652 1064208.7951459293 1365326.406247901 2170049.631054529 1151848.3278229749 1210887.5377744618 1413006.7300527128 1364761.9559146273 1.0108957109642644 0.9409449326647749 1.0414357494970905 0.779776129114564 1.0004135888539591 1.590057241594355 0.8439921136657393 0.8872518262446414 1.0353503216652558 1.0 20.380217905106573 4.232106215417859 23.870898909497768 1.0129731732889005 0.9759203350038936 0.006260429087454167 0.2087704015795745 903.2627359553246 3340713.9146307777 0.05431656647700892 0.12222733263109234 17064.996966658997 -4.232106215417859 -0.03705283828500683 LKEELEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEELEEAR 9 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 147.74 8.360299999999999e-05 1316310000.0 1962450.0 2087600.0 1846860.0 1757640.0 1648470.0 2118090.0 2247840.0 1962710.0 2920390.0 2235820.0 False True 1951884.3872486928 2157084.504019153 2106881.8348051063 1980157.0437851131 1858392.8832528074 1971671.4237475488 2139103.3916173102 2109177.3866394367 2200699.0157211074 2093128.0534181958 0.9325202937589775 1.0305554409327764 1.0065709221012302 0.9460276644572249 0.8878543671601684 0.9419736267581424 1.0219648951357916 1.0076676308432404 1.0513924421046492 1.0 20.997229144835718 2.2296699621795133 24.933624992941038 1.0195161887974076 0.9594325152999464 0.38290120160218577 0.03893079158020324 230.01334979142547 645061.3893519308 0.015987920085577874 0.01198053357334065 169.69535791506513 -2.2296699621795133 -0.06008367349746113 LKEELIDAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEELIDAIR 10 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 0 172.92 3.2544e-06 372100000.0 1163400.0 1248500.0 1174100.0 1061100.0 1103100.0 1320500.0 1214600.0 1099300.0 1561300.0 1308200.0 False True 1157136.3836658904 1290055.5677658124 1339403.0745398554 1195435.1512029644 1243573.2464140528 1229216.9431226433 1155845.1577774156 1181335.348132293 1176538.5353481432 1224709.5559936324 0.9448251448704355 1.053356333713885 1.0936495661235939 0.9760968593350142 1.0154025828639148 1.0036803723029286 0.9437708329463097 0.9645840863663802 0.96066739219128 1.0 20.22400821911531 2.4031890300378267 4.777078696211973 0.963800679942561 1.0198531141064133 0.2527695540991427 0.039851114908646575 0.2632629662751205 11.280039210142872 0.014214428476497792 0.011842725440964295 253.0399132615786 -2.4031890300378267 0.056052434163852305 LKEENEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEENEK 7 1 Q5M775-4;Q5M775;J3KSG2;Q5M775-5;Q5M775-3;Q5M775-2;I3L414;I3L3F1;A0A494BZY0;A0A494C199;A0A494C0J4;A0A494C1N2;Q9BXL6-3;Q9BXL6-2;Q9BXL6 Q5M775-4;I3L3F1 SPECC1;CARD14 Cytospin-B;Caspase recruitment domain-containing protein 14 0 ; 86.67 0.018154 398140000.0 378580.0 375030.0 356580.0 325320.0 363420.0 436590.0 463030.0 521340.0 845350.0 531350.0 False True 376541.7673441919 387512.6468395772 406783.36455107824 366505.4786441888 409699.3828408981 406409.5609223139 440631.4699536288 560245.0381108788 637024.819609654 497438.78808837803 0.7569610097982411 0.7790157424771011 0.81775561997149 0.7367850827488611 0.8236176845302792 0.8170041634350972 0.8858003849015157 1.126259253452793 1.2806094636441505 1.0 18.924159481390422 1.824983498744491 2.5109154496812396 1.1620687705009694 0.7895166643722993 0.8350976939867278 0.06884550196074406 0.09328484345972524 1.1017512657260229 0.038245218843018035 0.018339178983219667 66.83185239596773 -1.824983498744491 -0.37255210612867007 LKEEPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKEEPDR 7 1 P26358;P26358-2 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 ;;; 79.906 0.028595 1109480000.0 1844940.0 1844890.0 1656230.0 1614750.0 1570370.0 2072520.0 2174340.0 1901730.0 2672880.0 2082400.0 False True 1835007.0480321047 1906296.048390444 1889412.787790769 1819177.184435952 1770347.3111877786 1929251.5705873114 2069158.867414576 2043646.7493892703 2014184.5387570262 1949499.4491676656 0.941270872795351 0.977838721218584 0.9691784158223022 0.9331509096925601 0.9081035195694076 0.9896138064624748 1.061379559916264 1.0482930632587768 1.0331803579718772 1.0 20.89467231642536 2.4491920533254627 4.906580486500695 1.040662272780295 0.9480801492662437 0.7656009986395973 0.02332381286849501 0.08808211138235089 5.418783823308295 0.008481120171540934 0.007216726697215252 281.31445817067333 -2.4491920533254627 -0.09258212351405126 LKEEYQSLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEEYQSLIR 10 1 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 ; 151.1 1.861e-05 1882410000.0 4463700.0 4691700.0 4342400.0 4011300.0 3774300.0 4651100.0 4690100.0 4082900.0 6206700.0 4810700.0 False True 4439667.93516369 4847860.398307454 4953772.175182575 4519130.168712146 4254934.732971229 4329580.40451172 4463221.9450781 4387586.730546105 4677141.950519006 4503677.00735252 0.9857873750527999 1.0764227519853298 1.0999394865784666 1.0034312321541703 0.9447690689240803 0.9613434527927787 0.9910173260186345 0.9742232232424992 1.038516292994212 1.0 22.102671933909317 3.525293938316682 8.15884888885278 0.981712475868929 1.0557620242056547 0.4264308474815006 0.03572081529329594 0.28295277730266766 44.317625706607316 0.00946540128193498 0.014566575644185266 3351.922265300515 -3.525293938316682 0.07404954833672572 LKEFLEDYDDDRDDPK ddPTM_BT-474_Trastuzumab_2h_R1 5 LKEFLEDYDDDRDDPK 16 2 P49756 P49756 RBM25 RNA-binding protein 25 0 ;;;; 201.12 1.8999e-11 1964651000.0 4517990.0 3303430.0 2841780.0 2598890.0 2724020.0 4029890.0 4016710.0 3933960.0 6721760.0 3940000.0 False True 4493665.643835882 3413382.6705843993 3241877.9228054443 2927909.207529806 3070907.800468505 3751313.1896406775 3822406.391977713 4227532.071444112 5065272.314969408 3688545.826796288 1.2182756714558394 0.9254006404873967 0.8789040654596394 0.793784148283949 0.832552432494993 1.0170168315080705 1.0362908776160416 1.1461243183512142 1.3732436989589702 1.0 21.814620729252347 1.9761029538650727 1.791600004801172 1.1954346931951632 0.9245110741716629 0.35489829763799563 0.1381372266458467 0.3617747007228703 2.160446370186836 0.08650275165735673 0.04254405756548419 94.6461502970532 -1.9761029538650727 -0.27092361902350026 LKEHCK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEHCK 6 1 Q96DG6 Q96DG6 CMBL Carboxymethylenebutenolidase homolog 0 ; 100.82 0.022366 822500000.0 2837900.0 2842000.0 2448100.0 2183800.0 2136500.0 1800510.0 2830500.0 2589300.0 4251500.0 2980300.0 False True 2822621.0617203345 2936594.2519747242 2792771.2007333464 2460268.8560899403 2408570.6109723733 1676044.9816446416 2693577.901439962 2782526.7141989865 3203774.7921812786 2790094.7024367973 1.011657797584838 1.0525070168442592 1.0009592858243168 0.8817868633423821 0.8632576553293296 0.6007125780285618 0.9654073387141519 0.997287551483037 1.1482674008818352 1.0 21.411882660703792 -0.29068741701754286 7.167295045703011 0.999989498225273 0.9418356597271995 0.011837628624298269 0.1389276074711264 0.0 0.0 0.14221435965478166 0.033520246031332905 0.5120502505538852 0.29068741701754286 -0.05815383849807354 LKEHEDYCGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEHEDYCGAR 11 1 O14545;F8VNX8;F8VVF3;O14545-2 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 0 ; 148.18 2.0999e-05 671450000.0 908500.0 859330.0 751780.0 673750.0 722360.0 885460.0 870510.0 817990.0 1052740.0 914780.0 False True 903608.7369438381 887932.279574045 857624.0894111004 759046.680918856 814348.2642368365 824250.234348638 828400.1056288641 879032.5674690575 793306.332993278 856397.9572174392 1.055127151260138 1.0368220429425887 1.0014317318056725 0.8863247214940918 0.9508993539437807 0.9624617006639602 0.9673074283367699 1.026430014295178 0.9263290813663837 1.0 19.70792182887604 4.104297097842034 3.7695174884844493 0.963867016875107 1.0462038851073168 0.46902866125030995 0.036318442559500716 0.21045284286422253 5.635221258846917 0.0098665127576381 0.023673755741638557 12714.4359351051 -4.104297097842034 0.08233686823220976 LKEIEHNLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEIEHNLSK 10 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;A0A494C0Y7;E7ESD9 Q92878-2 RAD50 DNA repair protein RAD50 0 93.821 0.005122 429750000.0 503710.0 580180.0 522900.0 466970.0 450320.0 585210.0 589870.0 569180.0 910040.0 660130.0 False True 500998.0813274417 599490.9405737834 596519.7748717226 526088.3541204877 507665.5827442445 544755.8101361619 561335.7345777748 611655.1018374772 685772.8359112429 617999.9382342735 0.8106765880250325 0.9700501626045896 0.9652424506320774 0.85127573899701 0.8214654263473355 0.8814819815235224 0.9083103409065095 0.9897332734127376 1.10966489393285 1.0 19.23724716837696 1.6141492266731428 2.7936720468057747 1.0548610023474463 0.8878480101439322 0.6033427194259312 0.055846235119483494 0.15705758883376364 2.8445668930157075 0.03866442267024831 0.015499363219556006 41.129101934737506 -1.6141492266731428 -0.16701299220351407 LKEINFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEINFR 7 1 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 ; 131.06 0.0031944000000000005 1016860000.0 709880.0 863240.0 815530.0 762950.0 705080.0 882290.0 869610.0 784230.0 1027820.0 879290.0 False True 706058.0849550819 891972.4215603995 930349.5352861652 859539.391772975 794867.7586634217 821299.3689872611 827543.642067199 842753.2248392506 774527.5330823861 823172.9594019577 0.8577275005097826 1.0835783796985086 1.13019933983506 1.0441783612491813 0.9656145158617698 0.997723940766886 1.0053095556836762 1.0237863321597906 0.9409049753591118 1.0 19.650836066025548 3.2589574107861337 24.69503445804586 0.9938714563031024 1.040059197697154 0.062560021152402 0.06925533606192638 542.5013790461596 656817.476113603 0.019217659491058327 0.02598851612173275 1815.3376324344754 -3.2589574107861337 0.046187741394051685 LKELIFEETAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKELIFEETAR 11 1 P28482;P28482-2 P28482 MAPK1 Mitogen-activated protein kinase 1 0 110.29 0.0016542999999999998 416530000.0 265560.0 279170.0 249820.0 280130.0 275130.0 334450.0 306550.0 289920.0 366360.0 307190.0 False True 264130.2544664894 288462.0046881711 284992.48452563386 315594.42927762377 310166.17467672797 311330.25871061627 291721.0053652785 311555.3025839298 276075.4869724878 287584.87120140914 0.9184428004264058 1.0030499987120243 0.9909856639365437 1.097395798183689 1.0785204846867764 1.0825682777053216 1.0143823078960668 1.083350807997591 0.9599791735189688 1.0 18.133628257248823 4.616891091202504 1.3816096337300876 1.049626808919101 0.8879535243662523 0.40806406687696317 0.044021155561785506 0.8979777496664861 1.8275195305850447 0.011762968326017644 0.19016538423428436 41389.58684034055 -4.616891091202504 -0.16167328455284868 LKELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKELLR 6 1 E5RHX8;Q9NPA8-2;Q9NPA8;J3KNT2;E5RI00;E5RHT9;E5RJ84 E5RHX8 ENY2 Transcription and mRNA export factor ENY2 0 ; 110.35 0.026248 1835800000.0 2336000.0 2906200.0 2590300.0 2564900.0 2528300.0 2752800.0 2719300.0 2518600.0 3552700.0 2823200.0 False True 2323423.2355539994 3002931.1101650023 2954991.7247087886 2889616.0770148803 2850264.018591835 2562505.4153941823 2587757.070265216 2706550.721191658 2677184.6887410134 2643020.958936875 0.8790786269392921 1.136173778725121 1.1180356760762882 1.0933004777144086 1.0784114325519087 0.9695365474607968 0.9790906354772576 1.0240367985126901 1.0129260154705244 1.0 21.33375643480097 2.7496916947145906 24.275305998430756 0.9991943299343389 1.0701394442602892 0.17554157997586173 0.067715418227643 793.477353214907 1730460.310402177 0.020408337857658176 0.021452843052759827 561.9422612235281 -2.7496916947145906 0.0709451143259503 LKENLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKENLR 6 1 Q8NF50-3;Q8NF50;A2A369;Q8NF50-4;Q8NF50-2 Q8NF50-3 DOCK8 Dedicator of cytokinesis protein 8 0 84.359 0.051018 388790000.0 665420.0 782270.0 897090.0 648560.0 482250.0 591400.0 803360.0 581880.0 1173600.0 713780.0 False True 661837.4526551118 808307.3840577995 1023392.474353938 730667.6295016446 543661.6789803079 550517.9100058555 764498.4076667757 625302.8403267697 884382.0054343052 668225.9493021971 0.9904396160404179 1.2096318392033176 1.5315066339800598 1.0934439619782097 0.8135895942802477 0.8238499426440119 1.1440717147622184 0.9357655759698492 1.3234774949369021 1.0 19.349976482555203 3.4857167491634176 24.839397599742934 0.9961944888357429 1.2524430701118892 0.24485667393296617 0.18548591582369717 482.9463812590776 1395626.010653343 0.05074554480178852 0.07224633396827741 3059.967044212853 -3.4857167491634176 0.25624858127614625 LKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK 41 1 O43684;O43684-2;J3QT28 O43684 BUB3 Mitotic checkpoint protein BUB3 0 64.395 0.0023369 147600000.0 51740.0 76257.0 92534.0 109290.0 106670.0 107220.0 103610.0 72546.0 137490.0 117110.0 False True 51461.43758885443 78795.1681466701 105561.9828800536 123126.10279424395 120253.79221737557 99808.13376873142 98597.98847136348 77959.75090112379 103607.43177161088 109635.9395370848 0.4693847456056815 0.7186983436213206 0.962841047614198 1.1230450827905392 1.0968464604318844 0.9103596338039399 0.8993217815952798 0.7110784221879504 0.9450133980615475 1.0 16.742361277229843 4.519382015051139 2.685171536873604 0.9396921039502355 0.4648523043808565 0.6647811184101728 0.10922677683769193 0.23265552186591637 2.899773704248957 0.03312663615739899 0.1950261971510525 33066.026925352366 -4.519382015051139 -0.474839799569379 LKEPMDVDVEDYYPAFLDMVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEPMDVDVEDYYPAFLDMVR 21 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 0 ; 187.83 2.4974000000000003e-17 245710000.0 793160.0 809910.0 766660.0 741200.0 709460.0 886340.0 890940.0 789670.0 1056950.0 898990.0 False True 788889.7146883596 836867.364749066 874599.064071822 835035.8440030523 799805.5257011274 825069.4020199345 847841.8284786844 848599.1852630097 796478.8349043875 841615.6885359394 0.9373514840968554 0.9943580854640036 1.0391905426492938 0.9921818894033055 0.9503215500800082 0.9803398549463965 1.0073978420644414 1.0082977264114679 0.9463688067530308 1.0 19.682802072558044 LKEQGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEQGSR 7 1 O60264;A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 O60264 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 0 87.476 0.033195 0.0 89470.0 122250.0 110700.0 99172.0 116310.0 103640.0 119740.0 106680.0 139660.0 117740.0 False True 88988.30346105146 126319.01734831455 126285.59777835087 111727.16503166585 131121.38907661923 96475.61074231798 113947.71874877975 114641.00331006368 105242.66434812122 110225.73239771446 0.807327849181038 1.1460029758979746 1.1456997838099139 1.0136214348618158 1.1895714931928005 0.8752548850772564 1.0337669459762417 1.04005662576519 0.9547921529646688 1.0 16.750101537446632 2.7361761461598606 24.999012471628344 0.9923557742141854 1.0673330407823762 0.11342955564353274 0.10813534371052169 507.74618152869544 5323245.731509666 0.03321056565951223 0.03275161867527483 544.7235432946762 -2.7361761461598606 0.07497726656819081 LKEQSIFGDHRDEEEETHMK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEQSIFGDHRDEEEETHMK 20 2 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 191.79 4.2888999999999996e-18 640040000.0 555550.0 531930.0 503330.0 453540.0 453610.0 652200.0 630300.0 502690.0 958700.0 699190.0 False True 552558.9805274082 549634.9684915243 574194.4889772122 510958.11749749613 511374.5447428873 607114.949113661 599809.9810201759 540203.2804080985 722441.2309218369 654567.0955933242 0.8441594211614747 0.8396923282453033 0.8772125773550239 0.7806046483811481 0.7812408356386418 0.9275060619467118 0.9163460630059407 0.8252832811866871 1.1036931672634553 1.0 19.320181555863982 1.2432842270072664 24.99539244894577 1.0518466192735356 0.8498386146836554 0.7105237872112644 0.051786230855575766 56.86248579181265 300905.43494841474 0.03808864620429254 0.012900532278752217 17.50992262634902 -1.2432842270072664 -0.20200800458988022 LKERPS(ph)SREDTPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKERPSSREDTPSR 14 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 LKERPS(0.857)S(0.143)REDTPSR 99.413 0.012107 120150000.0 65842.0 70114.0 64231.0 78788.0 79607.0 77532.0 76873.0 57172.0 101800.0 89510.0 True False 65487.513987733975 72447.702105192 73274.1664941396 88762.55272168432 89744.47958234395 72172.39533069664 73154.35930662211 61438.46495353357 76712.75405011265 83797.39516663353 0.7814982059706053 0.86455792523297 0.874420575346427 1.059251931938665 1.0709698004798893 0.8612725394050704 0.8729908508629959 0.7331786964423108 0.9154551152522955 1.0 16.354617778144867 0.9807641507357325 24.231825611561426 1.0000000137040341 0.8865524336767318 0.09826565366147488 0.09992432430791023 2498.417190571628 3147316.8043679916 0.10772673421201616 0.02693168352580976 9.5667439573187 -0.9807641507357325 -0.11344758002730237 LKESER ddPTM_BT-474_Trastuzumab_2h_R1 1 LKESER 6 1 E9PL50;B3KRD1;B7Z4D2;A0A0C4DG86;Q9NX95-5;Q9NX95-2;Q9NX95-4;Q9NX95-3;Q9NX95 E9PL50 SYBU Syntabulin 0 92.925 0.042137 124330000.0 224020.0 275640.0 277660.0 286470.0 266100.0 213710.0 284380.0 233940.0 264310.0 280390.0 False True 222813.9012109621 284814.5107721014 316752.11453601596 322737.07262756955 299986.25770173105 198936.73071922752 270623.4529629023 251397.79072324993 199174.34207254695 262495.2701460437 0.8488301563948022 1.0850272106375098 1.2066964648916743 1.2294967160665764 1.1428253832338717 0.7578678678992795 1.0309650639127188 0.9577231261476845 0.7587730703175449 1.0 18.001931901793384 2.764932843118427 24.94166574125726 0.9142634745972905 1.1144360310266506 0.3765599175265465 0.12863276758804265 816.0432129706913 771775.6167675736 0.040177939421724325 0.0426029411109279 582.0132115282395 -2.764932843118427 0.20017255642936005 LKESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKESLR 6 1 P35410 P35410 MAS1L Mas-related G-protein coupled receptor MRG 0 105.95 0.079715 0.0 273970.0 290120.0 293600.0 257810.0 253770.0 302610.0 300450.0 276660.0 375420.0 302520.0 False True 272494.9759609283 299776.4688187563 334936.32798305183 290448.71956614504 286086.10528736643 281691.2829673182 285916.08566954115 297305.77405101457 282902.77137026837 283212.91459959734 0.9621558972555263 1.0584844594483847 1.1826308431470378 1.0255489936847604 1.0101449847081698 0.9946272519583707 1.0095446603265446 1.0497606525865586 0.9989049114170254 1.0 18.11152752871358 3.503146246152601 24.97385994442994 1.0149161177618249 1.0730398220470116 0.1928046324957694 0.05164643309020939 1185.9042302526764 1138003.2261026485 0.013981323158936335 0.02156717331592336 3185.269962366841 -3.503146246152601 0.05812370428518676 LKETAENSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKETAENSLK 10 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 164.81 5.512000000000002e-06 549440000.0 732440.0 717790.0 652670.0 537130.0 541490.0 773950.0 749710.0 679630.0 1043200.0 759630.0 False True 728496.6244217337 741681.2062367816 744560.2628906632 605130.6029268199 610445.5418373181 720448.6581823325 713443.6631296783 730347.4416912128 786117.338163827 711149.7630480377 1.0243926979590714 1.0429325084183168 1.0469809617870445 0.850918659289413 0.858392385903225 1.013075860553534 1.0032256216634439 1.026995268283424 1.1054174226178084 1.0 19.439793887522736 1.9352155287051647 1.846916801594854 1.050291409814149 0.9685741146486029 0.17993519355286847 0.06948167861645428 0.6463126082447859 4.093495951930387 0.04839890772326279 0.023197312752690376 86.14211463384349 -1.9352155287051647 -0.08171729516554604 LKETAESVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKETAESVLK 10 1 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 138.94 0.004696 0.0 1770270.0 1761660.0 1665090.0 1285800.0 1457670.0 1840020.0 1730470.0 1625020.0 2628900.0 1725360.0 False True 1760739.0630154877 1820295.788154044 1899520.198778269 1448582.148163955 1643295.6342130117 1712823.748341179 1646760.5550626428 1746287.2440843594 1981042.820455218 1615246.0476449858 1.0900748313748418 1.126946443118074 1.1759943332149008 0.8968182589123029 1.0173655193949689 1.0604104252961712 1.0195106544068657 1.0811276997894101 1.2264650474418808 1.0 20.62332251423084 -0.3158261703130347 6.8443989467839375 0.999999955840567 1.0720488847226113 0.06422897430820562 0.08640710109396271 0.0 39751816.12431756 0.08410658402625497 0.02039884304206015 0.48325218871838754 0.3158261703130347 0.07204892888204428 LKEVFSMAGVVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEVFSMAGVVVR 13 1 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 186.56 7.0221e-06 745070000.0 824660.0 1151150.0 1009390.0 1044020.0 1086380.0 1105420.0 1149820.0 983470.0 1461850.0 1125240.0 False True 820220.1221883392 1189465.331865131 1151503.3382248401 1176192.824954218 1224724.053521257 1029004.9172787843 1094198.8138610476 1056861.52535947 1101596.6552864176 1053426.2198335673 0.7786213279539665 1.1291396677529602 1.0931029782102522 1.116540297563551 1.1626101861360099 0.9768172634257752 1.0387047457713006 1.0032610784326645 1.0457273936664124 1.0 20.006657843130405 -0.367177935082853 7.831966350264547 0.9999999999823261 1.0438331951268773 0.009764874954954705 0.10276354283498032 0.0 0.0 0.09486183026965711 0.022359147819813956 0.42936047715466713 0.367177935082853 0.043833195144551196 LKEVLEYNAIGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKEVLEYNAIGGK 13 1 P14324-2;P14324;A0A087WVN4;A0A087X1D8 P14324-2 FDPS Farnesyl pyrophosphate synthase 0 136.51 6.5156e-05 741670000.0 1197800.0 1095400.0 943530.0 897690.0 865570.0 1271700.0 1187000.0 1142800.0 1795000.0 1295100.0 False True 1191351.177888091 1131859.7268167175 1076370.8226902205 1011337.4619577713 975795.208864664 1183790.3722597999 1129580.2752196556 1228081.5390208182 1352646.3017677055 1212445.6092091065 0.9826017504119003 0.9335344350457451 0.8877683374121423 0.8341301698617882 0.8048156564327759 0.9763657546931125 0.9316543906299393 1.012896190718123 1.1156346243441415 1.0 20.20948859820386 1.8148549185629534 1.6094823050329297 1.0587914402209493 0.8945277441055733 0.5416610416835856 0.058470520531092446 0.2851955085552012 1.4106708797653198 0.04448622629534968 0.01865138149531762 65.29124027573079 -1.8148549185629534 -0.16426369611537595 LKEYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKEYLK 6 1 O75351;K7EKZ3;K7EL71;Q8WWQ8 O75351 VPS4B;STAB2 Vacuolar protein sorting-associated protein 4B;Stabilin-2;190 kDa form stabilin-2 0 ; 92.925 0.042137 761870000.0 996580.0 1151040.0 1078710.0 881910.0 920830.0 1216520.0 1163460.0 1011050.0 1659800.0 1208520.0 False True 991214.5240104467 1189351.6705816258 1230582.9916845968 993559.7155757308 1038092.2423129844 1132424.835780053 1107178.9949511879 1086499.6850078737 1250764.5301805213 1131391.2189339718 0.8761023662039701 1.0512293631748935 1.0876723904964423 0.8781752049586263 0.9175360608606311 1.0009135804032976 0.978599600582372 0.9603218292887263 1.1055101977537234 1.0 20.109666448273746 1.2581285884973215 24.993954441692242 1.0527551250396985 0.9717362361827697 0.19186633145407783 0.06869674941127378 348.78458204586065 445501.3807469353 0.04593611441747382 0.016719811186871925 18.118764843896088 -1.2581285884973215 -0.08101888885692876 LKFEGKT(ph)FY(ph)LY(ph)VSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKFEGKTFYLYVSQK 15 2 A0A087WVP2;H0Y5N1;B5MC67;Q7Z6J6-2;Q7Z6J6;H0YNI9 A0A087WVP2 FRMD5 FERM domain-containing protein 5 3 LKFEGKT(0.998)FY(0.998)LY(0.998)VS(0.007)QK 43.813 0.093441 883400000.0 338620.0 459940.0 456560.0 401870.0 424430.0 434540.0 432630.0 376440.0 312880.0 409690.0 True False 336796.9075442192 475248.824860399 520839.6795093405 452746.70079534035 478478.64470629697 404501.2725971328 411702.03409290616 404531.86432358756 235774.916377203 383543.2334467443 0.8781198002571048 1.2391010541094272 1.3579686306254704 1.1804319860545918 1.2475220600462884 1.0546432248642408 1.073417539903156 1.0547229856937563 0.614728395175666 1.0 18.54902968362193 1.4611636965174157 3.7018523080685424 0.8068957813228207 1.1572892425058077 0.42895210571240394 0.15202103189766566 0.18582226699569931 4.892856011310623 0.10603424368696662 0.03870662265509755 28.917696577138617 -1.4611636965174157 0.350393461182987 LKFNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKFNFK 6 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 119.7 0.018958000000000003 1526610000.0 2284770.0 3340570.0 1936370.0 2616190.0 2844610.0 3711870.0 3029260.0 3433290.0 5540300.0 4234420.0 False True 2272469.05218181 3451758.8530327887 2208994.06477024 2947399.385755995 3206854.2221755795 3455277.163702118 2882723.120903028 3689499.533693366 4174967.301216499 3964175.6903306507 0.5732513464841575 0.8707381111922612 0.5572391935499681 0.7435087685304264 0.8089586518573542 0.871625637614945 0.7271935822457407 0.9307103977991515 1.0531741343856196 1.0 21.91858947280516 2.0105277077430945 0.5667777051787241 1.0370551741333893 0.6800516954293382 0.5944503324339934 0.10036374534359588 0.5740261984551597 0.38192602141919163 0.09127529498760616 0.06230959087206933 102.45371431174111 -2.0105277077430945 -0.35700347870405114 LKFS(ph)DDEEEEEVVK ddPTM_BT-474_Trastuzumab_2h_R1 6 LKFSDDEEEEEVVK 14 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK 210.47 3.1483e-09 3853490000.0 4980040.0 2997300.0 2647531.0 2385797.0 2621831.0 4037600.0 3768087.0 3925802.0 6284170.0 3819751.0 True False 4953228.017974463 3097063.318593892 3020280.352048013 2687838.6555787222 2955705.6370401625 3758490.215488063 3585810.236319801 4218765.280058634 4735520.507063816 3575971.2209266373 1.3851420249100717 0.8660761307221464 0.8446042111226418 0.7516387827310942 0.8265462595849007 1.0510403980583853 1.0027514246578904 1.1797537003011533 1.3242613585230998 1.0 21.769903695220826 2.0001817133022146 1.8156048240377174 1.1875463285345214 0.9243880640566366 0.20921317754847846 0.18156696462378868 0.48364676440436755 2.9750727560946095 0.1109738994987895 0.05594801343482071 100.04184978866944 -2.0001817133022146 -0.2631582644778847 LKFS(ph)DDEEEEEVVKDGRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKFSDDEEEEEVVKDGRPK 19 3 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 LKFS(1)DDEEEEEVVKDGRPK 123.44 2.2282e-05 366060000.0 280560.0 280930.0 284700.0 317500.0 364300.0 464500.0 458740.0 297630.0 768930.0 390050.0 True False 279049.49613314646 290280.58522422897 324783.285343239 357695.46744599135 410691.44562472956 432390.20831538626 436548.99364301946 319840.6619345167 579437.5046341175 365156.67506139394 0.7641911409293826 0.7949480457270128 0.8894354328553163 0.9795671060534547 1.12469926930866 1.1841224270176312 1.1955114707121877 0.8758998089812866 1.586818875861153 1.0 18.478156077705442 3.673797923964985 1.3382710923438736 1.1438089615082077 0.7695031062899259 0.4540021269859995 0.17204375380734271 0.4417381211642012 1.534052167221134 0.0540424656524486 0.13016604601865786 4718.434427144332 -3.673797923964985 -0.37430585521828175 LKFS(ph)DEEDGRDS(ph)DEEGAEGHR ddPTM_BT-474_Trastuzumab_2h_R1 6 LKFSDEEDGRDSDEEGAEGHR 21 2 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR 193.18 4.3943000000000006e-18 11256780000.0 3852660.0 3045540.0 2547760.0 2654820.0 2812330.0 3632230.0 3481370.0 3323570.0 5114050.0 3573040.0 True False 3831917.706630765 3146908.957832193 2906462.4624730926 2990919.939795176 3170463.555514127 3381142.489449721 3312962.832975104 3571591.6701464932 3853760.9022591207 3345005.528166553 1.145563938344549 0.940778402706276 0.8688961611570692 0.8941449915733154 0.9478201243069111 1.0108032590615703 0.9904207347576457 1.067738644995345 1.1520940308793524 1.0 21.673577164481458 1.9749160473798717 1.5992043179979698 1.0832714775790313 0.9541207331404068 0.25714923002087897 0.07885617040942088 0.48164599453647844 2.294466383745251 0.052989589799919586 0.025243213471924406 94.38783993550112 -1.9749160473798717 -0.1291507444386245 LKGDDLQAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKGDDLQAIK 10 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;G3V576;P07910-2;G3V4C1;B2R5W2;G3V2D6;A0A0G2JNQ3;O60812;B2RXH8;A0A0G2JPF8;P0DMR1;B7ZW38 B4DY08;P07910;P07910-2 HNRNPC;HNRNPCL1;HNRNPCL2;HNRNPCL4;HNRNPCL3 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 3 0 125.74 0.0033337 0.0 5902400.0 4095000.0 3556000.0 3043000.0 4136300.0 6016000.0 4553600.0 4924500.0 6661500.0 4701800.0 False True 5870622.134218294 4231299.599520229 4056653.8906939155 3428243.48799418 4663033.287229121 5600128.080140726 4333324.9715587385 5291991.196104318 5019862.584526776 4401727.0985865 1.333708792647207 0.9612816752949088 0.9216050427107588 0.7788405349107335 1.0593644682621357 1.2722569924743998 0.9844601617738349 1.2022533604601937 1.1404302157075514 1.0 22.06963827209101 3.0014963152498026 24.99996279230779 1.1306073737623277 0.981712495166267 0.11696513588476054 0.15257794523057325 88.78867115731117 1483396.0677444756 0.04393610396536669 0.052155064211634836 1003.4513353781606 -3.0014963152498026 -0.14889487859606065 LKGDDLQAIKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKGDDLQAIKK 11 2 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;G3V576;P07910-2;G3V4C1;B2R5W2;G3V2D6 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 153.38 1.828e-05 16383200000.0 31542000.0 23524000.0 21647000.0 20864400.0 25203000.0 34372000.0 28971000.0 29316000.0 47727000.0 31890000.0 False True 31372181.37664568 24306982.119441736 24694709.440902997 23505830.90072489 28412452.660115447 31995944.5429849 27569562.050032534 31503708.78363163 35965320.359034695 29854752.89759736 1.0508270319387047 0.8141746207987507 0.8271617429092962 0.7873396568161375 0.9516894263895251 1.0717202936742396 0.9234563804496022 1.0552326087470973 1.20467653784966 1.0 24.83145729204823 2.9845788688107944 4.670803281207654 1.042225201416115 0.8625825292623268 0.4507342085882633 0.09393578493517057 0.1819070678734656 10.3672546017515 0.028673829000107665 0.03232358304116223 965.1145627698257 -2.9845788688107944 -0.17964267215378826 LKGEATVSFDDPPSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKGEATVSFDDPPSAK 16 1 P35637-2;P35637;H3BPE7 P35637-2 FUS RNA-binding protein FUS 0 128.26 5.6327e-05 622090000.0 1283700.0 1158200.0 1155800.0 982400.0 1094200.0 1457800.0 1305300.0 1299400.0 1843300.0 1438700.0 False True 1276788.7018324782 1196749.9868533164 1318526.5936063058 1106771.7392722599 1233539.8841684863 1357025.7172920785 1242157.6522697702 1396367.8262195042 1389043.4139545446 1346880.934266962 0.947959592677261 0.8885343584617936 0.9789481460912592 0.8217294573811892 0.9158492430808953 1.0075320562991248 0.9222475577960516 1.036741846063383 1.0313037913113896 1.0 20.361190889957395 2.2066226398421134 1.1651105988498642 1.023107030761515 0.910925343225793 0.44530683992156705 0.04866527982259975 0.4285264713373518 1.1117870120844235 0.032302735733867875 0.017779952792604328 160.92467467836224 -2.2066226398421134 -0.11218168753572211 LKGEIDASVPELEGDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LKGEIDASVPELEGDLR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 167.92 1.9716e-09 1531060000.0 627411.0 666660.0 642230.0 566402.0 588050.0 796120.0 757030.0 681390.0 836710.0 743980.0 False True 624033.088887916 688849.37509552 732650.4016367701 638108.4351254946 662934.6818545775 741086.0982648993 720409.566764563 732238.7818283119 630514.0318395852 696498.559446677 0.8959574724514432 0.9890176594805398 1.0519051212666017 0.9161661951353215 0.95181055705447 1.0640166992644526 1.034330304052433 1.0513141368304166 0.905262506702796 1.0 19.409760843370613 2.7623690989600305 24.416602213082804 1.0191417702424697 0.9650922180202254 0.1539413988487247 0.056633106047581885 1054.4731404371598 1081404.9214735143 0.01740968237963134 0.018452781102655306 578.5875695320498 -2.7623690989600305 -0.05404955222224428 LKGELESSDQVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKGELESSDQVR 12 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ; 99.927 0.0032112 918110000.0 654270.0 736330.0 730740.0 708130.0 658660.0 812710.0 828080.0 710480.0 898380.0 771790.0 False True 650747.4830162309 760838.2989291153 833621.8402940587 797779.1853937957 742536.4468163177 756529.2706135586 788022.6068272055 763499.6253443392 676986.2866752488 722533.7014373371 0.9006465466201758 1.053014271051411 1.1537480378226426 1.104141140830902 1.0276841693877934 1.0470504962032832 1.0906378557285166 1.0566975960090284 0.9369615359512217 1.0 19.462705355839162 1.2529707827555472 23.95986404767574 0.9684808088928336 1.0596094531574596 0.2223871867157825 0.06347673978536071 173.58134453713492 288619.6504242649 0.043170486792196594 0.015583856627158952 17.904853947355065 -1.2529707827555472 0.09112864426462597 LKGNKHDDGT(ph)QSDSENAGAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKGNKHDDGTQSDSENAGAHR 21 2 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 LKGNKHDDGT(0.5)QS(0.5)DSENAGAHR 95.123 0.0014796 149880000.0 68962.0 61281.0 51864.0 57445.0 59097.0 72027.0 76588.0 62286.0 126670.0 84278.0 True False 68590.71625439847 63320.70103985322 59166.00039003071 64717.53111003144 66622.65265463814 67047.94302332043 72883.14584542798 66934.09760189943 95453.87579103907 78899.305885974 0.8693449895937793 0.8025507997670459 0.7498925335989389 0.8202547586864936 0.8444009982916936 0.8497912911961322 0.9237488850758633 0.8483483707528834 1.2098189549219849 1.0 16.267724987782252 1.2547074752697616 24.709822746987303 1.1049093848475415 0.8390635081152238 0.7395993428094556 0.0632208692908951 84.81927717486471 129801.64222154934 0.042004124830267914 0.0152298376027748 17.97659670059728 -1.2547074752697616 -0.26584587673231774 LKGPDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKGPDVK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 71.692 0.048908 828040000.0 558050.0 578980.0 586070.0 546470.0 427950.0 674970.0 610810.0 579890.0 906420.0 608010.0 False True 555045.520805184 598250.9992991996 668583.5617882406 615653.0459691678 482446.89584162284 628310.9126084746 581262.7867792058 623164.3364217547 683044.936405729 569206.2812564495 0.9751219181559145 1.0510266998084377 1.174589219768321 1.0815991780874117 0.847578306368446 1.1038369274870952 1.0211812587453235 1.0947952560295007 1.1999954302998823 1.0 19.118592056693917 1.6077522472304462 5.258024782526905 1.114268628842715 1.0396088907827108 0.08007368890288102 0.0927879943034843 0.3416728277954756 20.31732813993467 0.051490637320698925 0.024043885669498947 40.52772702219161 -1.6077522472304462 -0.07465973806000425 LKGSGNLEAIHIIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKGSGNLEAIHIIK 14 1 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 105.46 0.00059991 1410170000.0 3637900.0 3889300.0 3794700.0 3538200.0 3862600.0 4994200.0 4965900.0 4419800.0 6839100.0 5352700.0 False True 3618313.9506086884 4018752.9993685028 4328960.775876324 3986135.7572201765 4354479.214576125 4648962.709082249 4725680.4454197865 4749627.919289642 5153695.444244852 5011086.103322978 0.7220618197339082 0.801972449985157 0.8638767497939579 0.7954634334813901 0.8689691465665617 0.9277355473894978 0.9430451498899746 0.9478240487905493 1.0284587688140714 1.0 22.256691896508915 3.222736348597932 0.385481821469588 1.021359937768416 0.7049587957326111 0.8809961321992393 0.03177955149222597 0.6474384467645211 0.16578930759004734 0.032437157454612724 0.0847471465557846 1670.0764368490618 -3.222736348597932 -0.3164011420358048 LKGTS(ph)PSSSSRPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKGTSPSSSSRPQR 14 2 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 LKGT(0.24)S(0.732)PS(0.021)S(0.002)S(0.002)S(0.002)RPQR 50.966 0.087801 160460000.0 139420.0 105600.0 106490.0 84964.0 101510.0 87069.0 130140.0 115380.0 185370.0 124550.0 True False 138669.37821101825 109114.83216345195 121482.86637232713 95720.43368844478 114436.69680309168 81050.12496837969 123844.63101692143 123990.24148776848 139688.04733074043 116601.11236738012 1.1892629100664727 0.9357958080164722 1.0418671306459397 0.8209221314017512 0.9814374363988148 0.6951059327205352 1.0621222088063693 1.0633710002448957 1.1979992685714638 1.0 16.831222026262083 2.0283000962812974 24.999862635385234 1.0863104225514328 0.9387676888331307 0.21116643646989763 0.1299675426644919 307.78860388758613 271894.3740059402 0.04772544620784849 0.03524691444160654 106.73333908852273 -2.0283000962812974 -0.14754273371830218 LKKEDIYAVEIVGGATR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKKEDIYAVEIVGGATR 17 2 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 79.51100000000002 0.0075289 290750000.0 285190.0 310420.0 357300.0 307840.0 331270.0 408140.0 391670.0 349640.0 575320.0 487330.0 False True 283654.5687275877 320752.14204714756 407604.73429272685 346812.51243645395 373455.2709088782 379926.2424582175 372723.42577530065 375731.9122359456 433540.0948930343 456228.18217579596 0.6217383752463775 0.703052013397002 0.8934229629323222 0.760173364965031 0.8185712446079815 0.8327548742085875 0.8169671237707125 0.8235613820348494 0.9502703073392793 1.0 18.799396042151006 7.482227990796904 0.09935124117509714 1.0937609316299892 4.7170460414057596e-11 0.6955460335176241 0.05825576964348117 73.25384094794705 0.5752445865094902 0.8141211291400062 10.869153621343495 30354842.98750116 -7.482227990796904 -1.0937609315828187 LKLEDFFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKLEDFFAR 9 1 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 143.4 9.3059e-05 2563200000.0 2086600.0 2122100.0 2000350.0 1747030.0 1672560.0 2122800.0 2183700.0 2018400.0 2847500.0 2162500.0 False True 2075365.9774430555 2192732.8156634592 2281981.8926461083 1968203.8188729791 1885550.6019601915 1976055.832533698 2078066.088455905 2169023.257227529 2145771.7795451446 2024487.3985906062 1.0251315858463084 1.083105193536883 1.1271899712661897 0.9721986020970986 0.9313718639458369 0.9760771215021516 1.0264653116154732 1.0713938050380283 1.0599086865341683 1.0 20.94912523232006 3.7328825739997247 24.990245647719927 1.0091491404951876 1.078938544739046 0.35093280383756587 0.04536920240998453 609.9858121314769 2684678.7225750335 0.013979931756155658 0.022314205028949895 5406.081317407426 -3.7328825739997247 0.06978940424385849 LKLGEIVTTIPTIGFNVETVEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKLGEIVTTIPTIGFNVETVEYK 23 1 P61204;F5H423;F5H0C7;P84077;P84085;C9J1Z8;P18085;C9JPM4 P61204;P84077;P84085;P18085 ARF3;ARF1;ARF5;ARF4 ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 225.05 1.1070999999999997e-32 341360000.0 485230.0 497630.0 470500.0 447610.0 471840.0 608080.0 673380.0 584090.0 931010.0 657890.0 False True 482617.57559412136 514193.3137263123 536742.3103406883 504277.3801055122 531926.0271852112 566044.8608663512 640806.036838594 627677.7617489235 701575.0603948472 615902.896952034 0.783593611886692 0.8348610085631035 0.8714722937607637 0.8187611758299376 0.8636524195901568 0.9190488690142243 1.0404335488756427 1.0191180539256441 1.1391001144284036 1.0 19.232343388460148 2.4150203162096924 1.4838898228220951 1.059982025142604 0.8298250570452299 0.8650180158404412 0.04017239762466041 0.13119774338586926 0.5838139690030978 0.019533537201422486 0.013887542207867304 260.0281200958797 -2.4150203162096924 -0.23015696809737407 LKLS(ph)PSPSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 LKLS(0.499)PS(0.499)PS(0.001)S(0.001)R;LKLS(0.83)PS(0.169)PSSR;LKLS(0.785)PS(0.215)PSSR;LKLS(0.894)PS(0.105)PSSR 113.69 0.00088066 3539920000.0 6877000.0 6610000.0 5688200.0 5554570.0 5818200.0 8098000.0 7664100.0 6753100.0 9972300.0 7715700.0 True False 6839974.996106524 6830009.854170613 6489049.117279274 6257777.99247711 6559113.282826796 7538204.32064156 7293358.203294822 7257050.613546967 7514760.286973868 7223277.420256882 0.9469351096670565 0.9455555223473221 0.8983524707332234 0.8663349928839593 0.908052245706705 1.0435988931425366 1.0097020755206503 1.0046756051754806 1.0403532703727472 1.0 22.78422214952506 2.7460406215174014 24.775299277301247 1.0178462038170326 0.9114407723946809 0.8167665017895714 0.025236937886878155 225.5762393120052 747154.5418060527 0.008460639023766045 0.0088116206027379 557.2378674600013 -2.7460406215174014 -0.1064054314223517 LKNDSDLFGLGLEEAGPKES(ph)S(ph)EEGKEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKNDSDLFGLGLEEAGPKESSEEGKEGK 28 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 LKNDSDLFGLGLEEAGPKES(1)S(1)EEGKEGK;LKNDSDLFGLGLEEAGPKES(1)S(1)EEGKEGK 161.01 1.3544e-11 662130000.0 345560.0 158189.0 196226.0 92357.0 139119.0 276921.0 252973.0 229902.0 557640.0 244010.0 True False 343699.54335532495 163454.22523773 223852.91517303267 104049.3867304235 156834.98002708436 257778.1030719167 240735.72953929394 247058.45465870103 420217.09399317176 228437.07289252867 1.5045698975359532 0.7155328299738338 0.9799325141867289 0.4554838031013248 0.6865565997725313 1.1284425063229204 1.0538382692924424 1.0815164610996966 1.8395310737975907 1.0 17.80143727810585 1.498126313212871 3.7243265632285714 1.4338759690395513 0.9093600255181343 0.24327629350140278 0.33029522762790825 0.24808353466160615 7.176789713755208 0.21741616399919292 0.08354777832010965 31.486639601565344 -1.498126313212871 -0.524515943521417 LKNDSDLFGLGLEEAGPKES(ph)SEEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKNDSDLFGLGLEEAGPKESSEEGK 25 2 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 1 LKNDSDLFGLGLEEAGPKES(0.833)S(0.167)EEGK;LKNDSDLFGLGLEEAGPKES(0.873)S(0.127)EEGK 247.99 2.4041e-39 200615000.0 488970.0 244010.0 208970.0 153390.0 196168.0 346780.0 342300.0 304310.0 643550.0 310090.0 True False 486337.4398496739 252131.72534284004 238391.15960019894 172809.15827256895 221148.8320211693 322807.9148323142 325741.64128701587 327019.157454869 484955.72562819335 290299.7907185944 1.6752938010937493 0.8685218984096581 0.8211895675504853 0.595278273693568 0.7617946656928272 1.1119812178756683 1.1220870689596103 1.1264877478739521 1.6705341895967505 1.0 18.147184006341604 1.992985969718679 1.5342850668352281 1.2983522707603377 0.9265709954196182 0.15363586003045826 0.3136252372453941 0.68293088666274 2.997399491037728 0.21085600642355407 0.10095725594112862 98.39793168938844 -1.992985969718679 -0.3717812753407195 LKNEITR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKNEITR 7 1 Q86VP6 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 125.31 0.0037039 2980100000.0 2734300.0 3123200.0 2787800.0 2936200.0 2833300.0 3418800.0 3602400.0 3055700.0 4271400.0 3507600.0 False True 2719578.832609289 3227153.8239857336 3180298.0080080116 3307922.618944633 3194103.9607151966 3182466.4029895472 3428138.1494956096 3283731.850530198 3218770.703827621 3283741.964992559 0.8281950474800633 0.9827671779299036 0.9684981469045538 1.0073637497129373 0.9727024823408846 0.9691584895881911 1.043973060624871 0.9999969198364339 0.9802142610906746 1.0 21.646909334548457 5.492799723171248 1.397409612439025 0.9963701539756313 6.313602782473424e-11 0.8293033456818448 0.022162420519334192 3.4390238542652374 1.2621021898641311 0.006062443835762696 8.046036784319083 311028.1686123292 -5.492799723171248 -0.9963701539124953 LKNGELENIKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKNGELENIKPK 12 2 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 0 ; 154.07 3.6442e-05 1576330000.0 3016810.0 2514190.0 2504000.0 2343010.0 2414440.0 3324440.0 3393790.0 3063960.0 5507500.0 3707840.0 False True 3000567.8301591 2597873.294290049 2856541.434841836 2639634.8257657704 2721904.6224929276 3094629.2876899955 3229619.4121631985 3292608.2536736303 4150250.4217190123 3471202.476758471 0.8644174029747563 0.7484073060226762 0.822925615537522 0.7604381603895237 0.7841388224160107 0.8915150609652328 0.9304036378710839 0.948549753498788 1.1956232600970773 1.0 21.727004089977815 1.9150863733841972 1.137517683187003 1.079177563494292 0.7950005615925593 0.7449680250288151 0.06458320058666132 0.229547279410291 0.5470210077617067 0.049073019911369156 0.021515922961297593 82.24061955273751 -1.9150863733841972 -0.2841770019017327 LKNGFPHPEPDCNPS(ph)EAASEESNSEIEQEIPVEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 LKNGFPHPEPDCNPS(0.271)EAAS(0.271)EES(0.229)NS(0.229)EIEQEIPVEQK;LKNGFPHPEPDCNPS(0.272)EAAS(0.272)EES(0.236)NS(0.221)EIEQEIPVEQK 62.489 0.0091593 516550000.0 357837.0 294473.0 268444.0 257325.0 274523.0 409927.0 375471.0 352642.0 643340.0 395478.0 True False 355910.4453514281 304274.3557923124 306238.5818429238 289902.3186158736 309481.87682469864 381589.71135436324 357308.03329149063 378957.93671979243 484797.4773143374 370238.25545424933 0.9613011084301857 0.821833917240656 0.8271392200333172 0.7830155699609952 0.8358992412736819 1.0306598676200727 0.965075942390409 1.0235515404934177 1.3094202724122446 1.0 18.498094446097724 2.1730316461264083 1.0856919891456789 1.12342035998052 0.8414538888207524 0.5744346474873203 0.09588549183758052 0.3648172981541783 0.8124490055936892 0.06807279347901121 0.03630007294773421 148.94696082775286 -2.1730316461264083 -0.2819664711597675 LKNGFPHPEPDCNPSEAASEESNS(ph)EIEQEIPVEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 LKNGFPHPEPDCNPS(0.001)EAAS(0.016)EES(0.411)NS(0.572)EIEQEIPVEQK 192.15 5.0841e-21 184000000.0 103740.0 110600.0 107820.0 103280.0 110900.0 158630.0 142690.0 134660.0 244380.0 150730.0 True False 103181.4753665976 114281.25414088825 123000.11881175969 116355.23741046299 125022.45764420147 147664.28147485433 135787.5395712658 144709.01298962475 184155.8235242292 141110.28235355462 0.7312116002154567 0.8098719117757436 0.8716595046105885 0.8245695173292378 0.8859911238144589 1.04644593584526 0.962279554023196 1.0255029653122898 1.3050489337327178 1.0 17.10646359178375 2.714603817900212 0.6810648079246464 1.1159922110886753 0.7760478809646825 0.6734115856090712 0.08798634641771721 0.44641095280973203 0.4431069563922808 0.06513841034745492 0.06518744309971142 518.3269830303329 -2.714603817900212 -0.33994433012399283 LKNWEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKNWEIR 7 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 106.36 0.0076133 1129000000.0 3536900.0 4107400.0 3565300.0 3533800.0 3565600.0 3840200.0 3744400.0 3669100.0 5108300.0 4021300.0 False True 3517857.723386529 4244112.3260242725 4067263.2498568636 3981178.7176713194 4019658.025033042 3574736.0128584444 3563269.067002929 3942906.8733122875 3849427.9127130727 3764657.191191856 0.9344430434774348 1.1273569173719709 1.0803807739448397 1.0575142743371315 1.0677354725518726 0.949551534525436 0.9465055876375374 1.0473481841952252 1.0225175141363614 1.0 21.8440870687275 2.763618132101202 24.669996469821875 0.9964387354102852 1.0593079744535454 0.23595372009993065 0.053587779187954904 940.7222279586133 926172.3708947746 0.01635595535919386 0.017340981018840608 580.2539854896686 -2.763618132101202 0.06286923904326025 LKPEGLHQLLAGFEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPEGLHQLLAGFEDK 16 1 Q9BY32;Q9BY32-3;Q9BY32-2 Q9BY32 ITPA Inosine triphosphate pyrophosphatase 0 ; 202.34 1.8398e-11 1803620000.0 4301100.0 3557300.0 3315600.0 2994500.0 3058700.0 4220000.0 4063700.0 4033400.0 5865400.0 4088200.0 False True 4277943.355497132 3675702.5800667373 3782407.66028817 3373603.392966997 3448207.3146647285 3928281.332811483 3867123.306158475 4334392.789190201 4419950.762333315 3827287.5759158926 1.1177480841568053 0.9603936226786198 0.9882737017437258 0.8814606496246036 0.9009532851315861 1.0263878151020367 1.0104083451928876 1.132497285144024 1.154852013250035 1.0 21.867890876068888 2.0161751112076005 2.2637592103325503 1.1075842140088537 0.9690074371738279 0.3273414029917415 0.07279559335921283 0.31214105963877786 3.0091081917768303 0.03954932807318077 0.02165805173752984 103.79468403993526 -2.0161751112076005 -0.13857677683502578 LKPEYDIMCK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPEYDIMCK 10 1 J3KQ32;Q9NTK5;Q9NTK5-3;Q9NTK5-2;C9JCJ9 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 119.74 0.00059451 2165400000.0 2685600.0 2456400.0 2221410.0 2073280.0 1866810.0 2578000.0 2601900.0 2479900.0 3760600.0 2632700.0 False True 2671141.027998213 2538159.789074841 2534165.219158146 2335757.035421812 2104537.188050237 2399788.927959241 2476036.1567767635 2664962.730677041 2833850.5194582893 2464678.8320321334 1.0837683974409968 1.0298136033335112 1.028192876987839 0.9476922530697336 0.8538788748857153 0.9736720650051631 1.004608034360106 1.0812616621857272 1.1497849061014465 1.0 21.23296823311916 1.7850561132964629 3.5039057721373172 1.087706665016275 0.9829267759942456 0.2690146198097485 0.06634245185446136 0.2888231413879502 6.743912892888873 0.03810146429143124 0.01932659995115358 60.961565793310605 -1.7850561132964629 -0.1047798890220294 LKPGGVGAPSSS(ph)SPSPSPSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 LKPGGVGAPSS(0.009)S(0.742)S(0.247)PS(0.002)PSPSAR 180.21 3.3136e-17 2415800000.0 1694600.0 1535600.0 1612600.0 1623000.0 1441400.0 1871500.0 1883000.0 1676100.0 1779900.0 1820100.0 True False 1685476.4618877592 1586711.517710196 1839640.0630295295 1828471.6335900591 1624953.7461528555 1742127.6100371275 1791912.096241456 1801179.093063347 1341267.4944380715 1703939.6597339944 0.9891644062976281 0.931201705791566 1.0796392070108396 1.0730847322818378 0.9536451228598848 1.0224115625720542 1.0516288449563966 1.0570674159579883 0.7871566852593006 1.0 20.700442816775322 1.260285772893774 24.99998823301302 0.8935781794019118 1.0217673779341974 0.36272462201794486 0.066841418174429 203.96022581367913 234706.10970153214 0.04303896555181951 0.01568829570896746 18.20898645666027 -1.260285772893774 0.1281891985322856 LKPGGVGAPSSSS(ph)PSPS(ph)PSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 2 LKPGGVGAPS(0.005)S(0.017)S(0.143)S(0.835)PS(0.001)PS(0.996)PS(0.003)AR;LKPGGVGAPS(0.002)S(0.007)S(0.174)S(0.817)PS(0.002)PS(0.968)PS(0.03)AR 151.91 3.2736e-08 725700000.0 600530.0 545600.0 507240.0 456820.0 534910.0 614450.0 549380.0 573490.0 656500.0 587160.0 True False 597296.8132051551 563759.966177835 578654.9829908825 514653.3651611906 603027.6178400335 571974.5177597187 522804.3905645948 616286.7359232141 494714.3716493029 549686.9461070332 1.0866126937073952 1.025601881526329 1.0526991537437906 0.9362663035861489 1.0970382726218388 1.0405459358468117 0.9510947899839632 1.1211594895746584 0.8999929417151808 1.0 19.068250693288082 5.107643422626323 1.5424702782046795 1.0198620105106777 1.1844021025902958 0.09242845982884695 0.06646640609717339 8.134742007963682 8.551025478290748 0.01653955362334637 2.6748375069654955 128127.81575637606 -5.107643422626323 0.16454009207961806 LKPGGVGAPSSSS(ph)PSPS(ph)PSARPGPPPSEEAMDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFR 34 2 Q92797 Q92797 SYMPK Symplekin 2 LKPGGVGAPS(0.097)S(0.088)S(0.384)S(0.429)PS(0.072)PS(0.882)PS(0.047)ARPGPPPSEEAMDFR;LKPGGVGAPS(0.014)S(0.044)S(0.179)S(0.755)PS(0.131)PS(0.815)PS(0.061)ARPGPPPSEEAMDFR 94.623 0.00015493 624160000.0 162039.0 181047.0 189374.0 176310.0 185368.0 218431.0 195530.0 158153.0 244084.0 195766.0 True False 161166.60002822534 187073.03994977725 216036.21313168405 198630.8279225284 208973.5160377844 203331.3791012662 186071.46690286382 169955.17994466165 183932.76875803265 183272.04627629518 0.8793845177308471 1.0207396258769972 1.1787734000961316 1.083803187437973 1.1402367152202932 1.109451131432942 1.015274673270949 0.9273382569671458 1.0036051459846822 1.0 17.483627228814385 2.0235729821088904 5.842298779663821 0.9691740036129529 1.0749460318009625 0.21550303229467682 0.07836139082629875 0.23231413926767708 25.296909182446047 0.03223106720628319 0.0227718269304575 105.57789093323274 -2.0235729821088904 0.10577202818800957 LKPGGVGAPSSSS(ph)PSPSPSAR ddPTM_BT-474_Trastuzumab_2h_R1 5 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 LKPGGVGAPSSS(0.053)S(0.914)PS(0.032)PSPSAR;LKPGGVGAPSS(0.001)S(0.118)S(0.878)PS(0.004)PSPSAR;LKPGGVGAPSSS(0.017)S(0.974)PS(0.009)PSPSAR;LKPGGVGAPSS(0.001)S(0.089)S(0.909)PS(0.001)PSPSAR;LKPGGVGAPSSS(0.003)S(0.993)PS(0.004)PSPSAR 242.54 2.8548e-30 11875400000.0 5951210.0 6251820.0 6085620.0 5336780.0 5512750.0 6562040.0 6534700.0 6037080.0 7348650.0 6650340.0 True False 5919169.346601583 6459908.049394997 6942422.398842707 6012415.8008076195 6214766.035870794 6108421.620180624 6218591.596021809 6487597.565271077 5537673.674365037 6225909.60755747 0.9507316552454371 1.037584619210257 1.1150856399224751 0.9657088168304442 0.9982101295410475 0.9811291851660952 0.998824587570822 1.0420320843392827 0.8894561635849964 1.0 22.56985320015066 LKPGTMIEWGNNWAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKPGTMIEWGNNWAR 15 1 Q9BPW8;C9JDV8 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 0 152.68 2.5425e-06 612110000.0 513290.0 644780.0 632010.0 515490.0 684910.0 1047100.0 587430.0 496800.0 697380.0 729520.0 False True 510526.50367188035 666241.1125222597 720991.5144706017 580750.9811456188 772129.2287203782 974716.44160827 559013.7666994797 533873.7386992839 525520.0434132377 682961.4090265054 0.7475188157403884 0.9755179483302302 1.0556841205688392 0.8503423084672126 1.130560553664332 1.42719109561056 0.8185144274788513 0.7817041074989415 0.7694725301716755 1.0 19.381444535266933 LKPGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKPGTR 6 1 A0A087X2I1;P62333;H0YJC0;H0YJS8;A6PVL3-2;A6PVL3 A0A087X2I1 PSMC6;KNCN 26S protease regulatory subunit 10B;Kinocilin 0 74.717 0.072587 382470000.0 532110.0 623820.0 563580.0 545870.0 580910.0 539260.0 599510.0 580570.0 676540.0 598550.0 False True 529245.1788829785 644583.4715928463 642927.1652748251 614977.0860306878 654885.4451766732 501982.2254814976 570509.4109493976 623895.0814747255 509815.7821715444 560350.0265555637 0.9444903253350683 1.1503229071925996 1.1473670648806031 1.0974873862519705 1.1687077971642348 0.8958368906791184 1.0181304254704564 1.1134024304589925 0.9098166467580092 1.0 19.095968772719388 2.757183558947545 24.992420792443863 1.0067922595550676 1.1066835403849573 0.3135437525530965 0.08188623430471269 1157.9399182473574 1553980.5837207155 0.025280411471327337 0.026769471921073987 571.720228939587 -2.757183558947545 0.09989128082988974 LKPGYLEATVDWFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPGYLEATVDWFR 14 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ; 189.33 6.660600000000001e-07 6357000000.0 3923800.0 4490000.0 4612200.0 4042800.0 3409900.0 4206800.0 4605700.0 3975900.0 6080300.0 4264000.0 False True 3902674.6967751593 4639446.935737679 5261557.670038934 4554618.065482379 3844130.552939247 3915993.8177420185 4382904.6955174105 4272601.8472111225 4581891.536845775 3991867.8694059327 0.9776562813327669 1.162224574439163 1.3180690950128957 1.1409741540769471 0.9629904292176203 0.9809928449171826 1.097958359070054 1.0703264704618012 1.1478064121214637 1.0 21.928632537667784 3.4406702946914303 15.334553078559498 1.0494891559272048 1.16625766551241 0.2360571494190452 0.09257761781301642 4.286300720163069 1801.8745977157541 0.026523229356233576 0.03591917739583061 2758.482891150382 -3.4406702946914303 0.11676850958520513 LKPKPIDVQVITHHMQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKPKPIDVQVITHHMQR 17 2 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 103.5 0.00028827 2401700000.0 3521000.0 3644400.0 3842300.0 3578000.0 3635600.0 4320400.0 4164300.0 2883800.0 5690600.0 4198600.0 False True 3502043.3272198737 3765701.650913678 4383262.4421296995 4030974.4331393945 4098572.110110539 4021740.917127656 3962856.899829159 3099003.7996396874 4288227.880133315 3930641.753397694 0.8909596821416415 0.9580373606062065 1.1151518548696926 1.0255257756967986 1.042723394104203 1.02317666412901 1.0081958999198077 0.788421838993816 1.090973980629631 1.0 21.906333448947592 1.954550160229294 24.99125444871528 0.9267946415866587 1.0141474333252496 0.020510354667577113 0.09000774803454703 778.4899276151093 428062.8291582037 0.03677039677661807 0.02373562238322971 90.06377787826098 -1.954550160229294 0.0873527917385909 LKPLEVELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPLEVELR 9 1 P49755 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 0 ; 113.44 0.0016409000000000007 1776620000.0 3363100.0 4332000.0 4909300.0 3720000.0 3082600.0 4115500.0 4501300.0 3504600.0 6207800.0 4151400.0 False True 3344993.443275538 4476188.001250698 5600486.767599443 4190951.618579809 3475150.837998332 3831005.1718449364 4283554.922364138 3766131.047998212 4677970.870258254 3886454.097807643 0.8606800335458628 1.15174086419179 1.4410273803976457 1.078348415576022 0.8941700456358591 0.9857327721961298 1.1021756116405699 0.9690404037250033 1.2036603939043322 1.0 21.89002304625899 3.485064447432983 24.98819537362311 1.0207688822654033 1.1692884534749344 0.11679475494677871 0.15160061219218512 671.5920573404971 2112737.8142387234 0.04161451054107369 0.059007852851230495 3055.3744840061804 -3.485064447432983 0.14851957120953108 LKPNLGNGADLPNYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPNLGNGADLPNYR 15 1 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 0 ; 221.59 1.382e-12 2641900000.0 2426190.0 2654080.0 2484920.0 2321040.0 2613100.0 2783100.0 2753900.0 2725010.0 3525200.0 3063000.0 False True 2413127.662615047 2742419.4483747627 2834775.1366881663 2614883.426018409 2945862.7959428555 2590710.8477127077 2620683.3360803756 2928364.083520405 2656461.695259892 2867516.7176337633 0.841539178403231 0.9563743539872963 0.9885819040760065 0.9118982323409699 1.0273219255627366 0.9034684372653031 0.9139208570134959 1.0212195330937257 0.9263979801491685 1.0 21.451370466507566 4.736405355473314 5.508719427385744 0.9621276029522648 0.8373056865331656 0.3982572813041054 0.04409406707395764 0.1385218401253196 16.456024114915984 0.010028473908076386 0.0653107153465419 54501.1110068322 -4.736405355473314 -0.12482191641909923 LKPPVHYNGPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPPVHYNGPSK 12 1 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 120.57 0.00023725 1189900000.0 1278620.0 1340970.0 1267680.0 1120580.0 1079820.0 1394940.0 1316100.0 1312360.0 1923760.0 1373270.0 False True 1271736.0519880366 1385603.375816517 1446158.3251279115 1262445.313104345 1217328.6764054226 1298511.0811355559 1252435.2150097608 1410294.967229052 1449675.12506331 1285626.732884403 0.9891954013236784 1.077764906698703 1.1248664080618045 0.981968778972067 0.9468756718166956 1.0100218422047322 0.9741826169092062 1.0969707856532713 1.1276018831771268 1.0 20.29404040267102 -1.5594763558624753 6.628434099068739 0.9999554661660598 1.0370428717138056 0.029732732899152903 0.06268792133856725 4.3384077703257575e-05 2.8832260963522717e-06 0.063823214846232 0.01502521736233312 0.027575515766436527 1.5594763558624753 0.03708740554774581 LKPQLLQGVYAMGFNRPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKPQLLQGVYAMGFNRPSK 19 2 Q9NUU7;F6QDS0;H3BQK0;Q9UMR2;H3BN59;H3BTB3;H3BMQ5 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 94.384 0.00090272 265960000.0 139360.0 161980.0 182630.0 151530.0 145270.0 197760.0 208820.0 178670.0 276770.0 179790.0 False True 138609.7012443515 167371.4063810221 208342.71655158282 170713.68246327914 163769.27341725078 184089.3166769663 198718.57883013316 192003.2626678768 208563.74202799314 168315.6482740367 0.8235104856007174 0.994390052840023 1.2378095482386615 1.014247244470925 0.9729889947642663 1.0937148064643893 1.1806304456410202 1.140733286754622 1.2391227088311363 1.0 17.36080978442547 2.496353178243222 4.903328023902558 1.1508585391781334 1.0212580529768733 0.23823737859976857 0.10986755468466351 0.29015212449198174 19.028226532945922 0.038015508772796185 0.03390467736152516 313.58348205519206 -2.496353178243222 -0.12960048620126008 LKPVELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKPVELR 7 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 100.19 0.0090994 4117100000.0 7250600.0 8385800.0 7601100.0 7030500.0 7076900.0 8220100.0 7803500.0 7338900.0 10019000.0 8298100.0 False True 7211563.575217385 8664916.28367686 8671268.810054416 7920560.579146597 7978101.2669274025 7651863.835034032 7426014.892735105 7886565.98417909 7549951.697721797 7768508.153639163 0.9283073960396274 1.1153899966775185 1.1162077246443198 1.0195729247495486 1.0269798408063786 0.9849849782869201 0.9559126084274473 1.0151969758163442 0.9718663543121876 1.0 22.889206142732874 3.1163485078226647 2.008077256807771 0.9870927103605406 1.0576944515610218 0.22287775489352757 0.051745050101551435 0.43864050810823246 3.6202181023573594 0.01669335576657398 0.021212780387318667 1307.2194703412415 -3.1163485078226647 0.07060174120048124 LKPVFIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKPVFIR 7 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 94.407 0.012972 374320000.0 319760.0 336480.0 332740.0 321240.0 283530.0 362730.0 354670.0 302500.0 438070.0 353780.0 False True 318038.4476886758 347679.5333935446 379586.89977207343 361908.9510625208 319635.86488602735 337655.3288745755 337513.2571290271 325074.0860638755 330113.51833725814 331201.45751370396 0.960256787745315 1.0497524256189568 1.1460906682645484 1.0927154541508812 0.9650798860775 1.01948624081947 1.0190572821228059 0.9814995637524484 0.9967151739469601 1.0 18.337349496136266 3.2421207548824693 24.99980103181202 0.9976061588003277 1.067306367253911 0.3261051401788536 0.045698078397014265 109.01652345491388 765523.6268834523 0.013472625331516282 0.017555172438146138 1746.3076434551338 -3.2421207548824693 0.06970020845358327 LKQDGDSFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LKQDGDSFR 9 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 141.88 9.6366e-05 1114510000.0 1651770.0 1829990.0 1785810.0 1805030.0 1691110.0 2009350.0 2057650.0 1759090.0 2769780.0 2196250.0 False True 1642877.053848899 1890900.1108976835 2037236.5254612204 2033546.6129261025 1906462.834505729 1870448.3640011228 1958113.6085136693 1890362.2282780244 2087204.8321505012 2056083.4446957766 0.7990322854294386 0.9196611722037702 0.990833582516713 0.9890389508131034 0.9272302831015762 0.909714228197523 0.9523512353378231 0.9193995667611279 1.0151362472836454 1.0 20.97146738580435 4.695594814218658 3.247368888726252 0.9555074963335849 0.784124831759278 0.660943454011163 0.03499868468249999 0.179089420461816 3.0965439886376847 0.008621926612644744 0.07250549923299719 49612.92294185142 -4.695594814218658 -0.17138266457430684 LKQEFHYIEEDLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKQEFHYIEEDLYR 14 1 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 0 ; 137.52 1.249e-05 194111000.0 312260.0 377190.0 360040.0 322690.0 320910.0 367760.0 363300.0 330840.0 464120.0 378840.0 False True 310578.8268553476 389744.54113383044 410730.50247621996 363542.52091384894 361775.9863174086 342337.61681392166 345725.7910592253 355528.96077148017 349743.8448893742 354662.10685875814 0.8757034395530549 1.0989179097417465 1.1580896141233117 1.025039083351037 1.0200581886845992 0.9652500512276474 0.9748032969220146 1.002444168395659 0.9861325417227542 1.0 18.436085671168026 3.135529055638932 2.7446450124027555 0.9869596763477192 1.0532818033151403 0.11103191196474527 0.06809695726126481 0.5077288980321777 7.752545043612479 0.021089251567669786 0.026443779593158877 1366.2464787317351 -3.135529055638932 0.06632212696742112 LKQEYFVVAATLQDIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKQEYFVVAATLQDIIR 17 1 P11216;P11217;P11217-2;E9PK47;P06737-2;P06737 P11216;E9PK47 PYGB;PYGM;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form 0 ; 223.5 2.7549e-15 1185960000.0 1644190.0 1907550.0 2000590.0 1853930.0 1672440.0 1927600.0 2100520.0 1803390.0 2714100.0 2147930.0 False True 1635337.8637266802 1971041.6486116757 2282255.6825599903 2088637.3479122731 1885415.3206714885 1794349.549082322 1998909.822834364 1937968.1192288706 2045246.4220767303 2010847.2684646088 0.8132581172986596 0.9802045533357057 1.1349721673802788 1.0386852252120875 0.9376223397170813 0.8923350754791066 0.9940634747265714 0.9637569941891283 1.01710679580274 1.0 20.93937207692641 7.999890165112819 0.0036798649947734434 1.9111773174823823 0.0035367722933474515 0.02407831661922688 0.08080435821335608 833450.5514728527 237.15100701276825 58195.579512283315 64913.628236574084 99974712.78036514 -7.999890165112819 -1.9076405451890348 LKQNLEEQLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKQNLEEQLDR 11 1 Q8WZA0-2;Q8WZA0 Q8WZA0-2 LZIC Protein LZIC 0 184.43 4.4768e-06 422180000.0 588720.0 708360.0 617910.0 665460.0 716550.0 831480.0 795550.0 793700.0 1028900.0 827390.0 False True 585550.3969329403 731937.3343873384 704906.3570299983 749707.1677688499 807798.3951754047 774001.7446933861 757066.2072038719 852929.924326935 775341.3815536449 774585.2618357835 0.7559534447443184 0.9449409515650109 0.9100435959230044 0.9678820456666423 1.0428786022353502 0.9992466715142315 0.9773826646399248 1.1011440139016755 1.0009761607341578 1.0 19.56306452566273 5.895207007004375 0.553492750982905 1.0320547996210514 1.4090166628610794e-15 0.7749116073574852 0.04117551842889332 5.678327643347875 0.49693263587866 0.01983839073453161 5.003994870864069 785610.0073664321 -5.895207007004375 -1.03205479962105 LKQQSELQSQVR ddPTM_BT-474_Trastuzumab_2h_R1 5 LKQQSELQSQVR 12 1 Q14847;Q14847-2;C9J9W2 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;; 205.87 8.822800000000003e-08 7566910000.0 3487780.0 5832040.0 6165060.0 5922790.0 4493340.0 4150000.0 5361410.0 3419060.0 6486320.0 4628890.0 False True 3469002.1800087863 6026155.925857372 7033046.86033786 6672614.606722666 5065540.214887245 3863120.2680492015 5102058.115724865 3674207.6188348923 4887853.348235036 4333470.277207887 0.8005136664382319 1.3906074209282693 1.622959524455155 1.5397854790461194 1.1689338776660632 0.891461120286779 1.1773608192398148 0.8478672712166919 1.1279305119370395 1.0 22.047091378696482 3.008789233975869 6.789252887255211 1.0033647051788641 1.3626412173720228 0.32396033293360993 0.22327710930146222 0.15880922779681855 36.87278920006748 0.0669651975786622 0.07774893727181394 1020.4441351382713 -3.008789233975869 0.3592765121931587 LKQSAEEQAQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKQSAEEQAQAR 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 93.494 0.0065126 219160000.0 101610.0 115480.0 110580.0 112870.0 114140.0 101310.0 120150.0 112220.0 138560.0 126850.0 False True 101062.94304993236 119323.68199086584 126148.70282140971 127159.33042717807 128675.0524392169 94306.67815808786 114337.88548242752 120594.42624161359 104413.74460887644 118754.32439825131 0.8510253715983461 1.004794415660226 1.0622661823948474 1.070776420745235 1.083539930787663 0.7941325811582534 0.9628102897456354 1.0154950302036274 0.8792416203616915 1.0 16.85762052408519 LKQVEDEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LKQVEDEK 8 1 P35579 P35579 MYH9 Myosin-9 0 ;;; 153.05 0.00040799 2791360000.0 3854770.0 3041850.0 2915730.0 2763240.0 2718440.0 3943370.0 4143050.0 3707900.0 5904400.0 4023200.0 False True 3834016.3466252116 3143096.138412841 3326239.4400205147 3113065.900678618 3064617.2205437575 3670774.1135945003 3942634.8435120424 3984602.3263346893 4449339.734906536 3766435.931565189 1.0179428022374295 0.8345014213760139 0.88312651547965 0.8265283034789191 0.8136650340605205 0.9746015013373837 1.046781337887681 1.0579238300434435 1.1813130014022455 1.0 21.844768558100032 2.39754656066272 2.542125291869082 1.077359883029413 0.8710453503934612 0.6443943850279804 0.06851941390229775 0.16890768870032377 2.2324460914772124 0.026451693509570866 0.021132787048454973 249.773615681359 -2.39754656066272 -0.2063145326359519 LKS(ph)DERPVHIK ddPTM_BT-474_Trastuzumab_2h_R1 4 LKSDERPVHIK 11 2 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 LKS(1)DERPVHIK;LKS(1)DERPVHIK;LKS(1)DERPVHIK;LKS(1)DERPVHIK 169.04 9.0562e-06 8617100000.0 9385600.0 7272000.0 6274300.0 5990860.0 5906100.0 9380800.0 8839900.0 8307600.0 13821200.0 8099600.0 True False 9335068.97243818 7514044.123983164 7157666.902806758 6749302.261743278 6658206.82680269 8732327.376027934 8412280.265302641 8927555.297138024 10415150.45459154 7582676.593583557 1.2311047236720467 0.9909487805851473 0.943949911943173 0.8900949656028482 0.8780813403590031 1.1516154313395364 1.1094077614257072 1.17736200231624 1.3735453867839778 1.0 22.854275761609234 2.6281970183948413 6.5772370215571385 1.1711682821463993 0.9796929467816797 0.32773921956630714 0.1253850684058923 0.2822249063889624 14.762976757188719 0.041237453496565324 0.038800373429713354 424.8122369988761 -2.6281970183948413 -0.1914753353647196 LKS(ph)EDGVEGDLGETQSR ddPTM_BT-474_Trastuzumab_2h_R1 9 LKSEDGVEGDLGETQSR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(0.687)EDGVEGDLGET(0.234)QS(0.08)R;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR 289.4 1.5869e-45 14509360000.0 7187900.0 5512380.0 5251380.0 4825490.0 4663160.0 6334690.0 5513810.0 4914310.0 7339610.0 5743870.0 True False 7149201.145050765 5695856.2359959185 5990728.658186785 5436396.539231364 5256985.785285252 5896787.790556295 5247085.945500326 5281040.766560551 5530861.461235247 5377291.299025488 1.3295171764911444 1.0592426408121434 1.1140792501370473 1.0109916381536903 0.9776271161352114 1.0966093266371777 0.9757860702936516 0.9821005545148018 1.0285590185968891 1.0 22.358448196837912 7.999999940333867 0.8600230997889526 1.008707981467248 119.62092797182021 0.8186393724169602 0.04338301495282354 273.32243041449664 0.7177205623771158 0.013465221840568717 63477.17807308328 99999986.26136602 -7.999999940333867 118.61221999035295 LKS(ph)IEER ddPTM_BT-474_Trastuzumab_2h_R1 6 LKSIEER 7 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 LKS(1)IEER;LKS(1)IEER;LKS(1)IEER;LKS(1)IEER;LKS(1)IEER;LKS(1)IEER 139.86 0.001613 4131740000.0 8636190.0 8630300.0 8040270.0 7724180.0 8254350.0 10242520.0 9610300.0 8701800.0 12034020.0 9486190.0 True False 8589693.712610919 8917554.318373475 9172270.128720336 8702060.396021979 9305492.54513447 9534478.70069864 9145413.074088827 9351172.502845068 9068397.018606465 8880773.232664147 0.9672236287959007 1.0041416535188674 1.0328233689138735 0.9798764328330275 1.047824587042508 1.0736090710694104 1.0297991891574614 1.0529682785335355 1.0211269650768948 1.0 23.082253864183862 3.227109159083709 24.999319998113705 1.0421233160929357 0.9992257333100976 0.39608754034137184 0.024617218688311408 205.46013341209877 448533.3220448752 0.006886811023897898 0.008296935886463385 1686.9769905308374 -3.227109159083709 -0.04289758278283817 LKS(ph)IS(ph)REPS(ph)PALGPNLDGSGLLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKSISREPSPALGPNLDGSGLLPR 24 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 3 LKS(1)IS(1)REPS(1)PALGPNLDGSGLLPR;LKS(1)IS(1)REPS(1)PALGPNLDGSGLLPR 184.55 1.8987e-17 172877000.0 152170.0 115748.0 97997.0 107901.0 113190.0 156779.0 134111.0 153004.0 231140.0 167904.0 True False 151350.73362767638 119600.60220885642 111794.12579480644 121561.25553666137 127604.07557030799 145941.23674806894 127623.53857622844 164421.93541856934 174178.64411731888 157188.22297015347 0.9628630616710675 0.7608750830624627 0.711211843243712 0.7733483669431337 0.8117915780149583 0.9284489256919707 0.811915397761455 1.0460194301566053 1.108089657266445 1.0 17.262133604889332 1.708433776317653 4.418725516323018 1.0623569809871511 0.8171790198934178 0.6595593871764924 0.07500092081171678 0.1029117150710104 4.708356052560931 0.04188762086360036 0.02046153522425587 51.101515061161756 -1.708433776317653 -0.24517796109373335 LKS(ph)PSMAVPSPGWVASPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKSPSMAVPSPGWVASPK 18 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 LKS(0.939)PS(0.061)MAVPSPGWVASPK;LKS(0.931)PS(0.069)MAVPSPGWVASPK 204.18 6.6692e-16 1803190000.0 2072900.0 1565470.0 1527080.0 1447490.0 1269710.0 2025780.0 1768670.0 1861490.0 2712600.0 1893040.0 True False 2061739.736720843 1617575.7226033998 1742079.5903826943 1630742.0855855057 1431400.0423392155 1885742.596773183 1683112.675124469 2000403.8362546912 2044116.0769777577 1772224.5664869153 1.1633625758883561 0.9127374448995048 0.982990318115284 0.920166730798755 0.80768547587436 1.064053976247093 0.9497174945841694 1.1287530226601565 1.1534182042345873 1.0 20.757129995129983 1.7420555988628268 7.973953384140845 1.1041780814243045 0.9649578151928729 0.24857325069508784 0.09653145016487966 0.1441773523056454 31.48538353820967 0.04538863903393369 0.024240780537654587 55.21481213731521 -1.7420555988628268 -0.13922026623143158 LKS(ph)PSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKSPSQK 7 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LKS(0.838)PS(0.162)QK;LKS(0.831)PS(0.169)QK 110.38 0.0041279 1818590000.0 4721100.0 3711500.0 3293200.0 3014700.0 3021800.0 3219600.0 4251100.0 3912200.0 6284600.0 4595900.0 True False 4695682.122163515 3835035.03385087 3756853.9349924573 3396360.7108958494 3406608.3183881626 2997036.630123186 4045458.0522209583 4204148.229749069 4735844.539325522 4302585.727252051 1.0913628268744626 0.8913326257650668 0.8731619015042523 0.7893766507390466 0.7917583830604752 0.6965663952121448 0.9402388025873656 0.9771213164029501 1.1006973107657712 1.0 22.0367725069817 1.7371260214995157 2.5401260767114047 1.0423054545529569 0.8521146928804085 0.36058875240659716 0.10060808359450749 0.2795969548899867 3.7629802657242735 0.065687524938155 0.029235261202649167 54.59162494811355 -1.7371260214995157 -0.19019076167254834 LKS(ph)VEDEMDS(ph)PGEEPFYTGQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKSVEDEMDSPGEEPFYTGQGR 22 1 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 2 LKS(1)VEDEMDS(1)PGEEPFYTGQGR 124.98 1.2473e-05 159260000.0 238000.0 221090.0 185850.0 199560.0 199990.0 216290.0 177560.0 174640.0 271070.0 165540.0 True False 236718.6344442857 228448.84699827287 212016.0645628415 224824.2755386521 225457.54106640056 201338.38139189457 168970.7444549302 187672.52360395124 204268.43065190638 154975.09547407585 1.527462420462802 1.4741003791572929 1.3680653908569937 1.4507122892933502 1.4547985298974375 1.2991660419759143 1.0903090198979457 1.2109850491129073 1.3180726233917779 1.0 17.241676867208316 2.5414875187769543 3.3301632466299096 1.1738427017781277 1.450560781886563 0.7279596552060457 0.08599347415420115 0.13631129320829863 2.977692833397297 0.029525162854355372 0.026583209735932634 347.92650841830266 -2.5414875187769543 0.27671808010843524 LKS(ph)VEDEMDSPGEEPFYTGQGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKSVEDEMDSPGEEPFYTGQGR 22 1 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 LKS(1)VEDEMDSPGEEPFYTGQGR;LKS(1)VEDEMDSPGEEPFYTGQGR;LKS(1)VEDEMDSPGEEPFYTGQGR;LKS(1)VEDEMDSPGEEPFYTGQGR 253.49 3.0279e-37 1260420000.0 1149140.0 1079000.0 1078760.0 952850.0 968050.0 1144550.0 953740.0 846070.0 1330570.0 841900.0 True False 1142953.1579214558 1114913.8627307257 1230640.0312499888 1073480.712302088 1091325.4294181152 1065429.9524808966 907603.9525593885 909208.0396564074 1002668.852224544 788169.2212131468 1.4501367563709568 1.4145615341520883 1.5613906228865329 1.3619926830557922 1.384633401109411 1.3517781763172523 1.1515343762883918 1.1535695827565535 1.272149210142005 1.0 19.588145886345742 2.1969261411977072 0.4777956665926955 1.037260289892064 1.5006018581288683 0.7931298060638858 0.07204448514625655 0.4244422441654192 0.21040943389141886 0.07153442436428106 0.06582732246567168 157.371520597804 -2.1969261411977072 0.4633415682368043 LKSDTAAAAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKSDTAAAAVR 11 1 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ; 134.18 0.00013331 1146540000.0 1411570.0 1552530.0 1744010.0 1311390.0 963780.0 1295070.0 1639710.0 1209690.0 2511900.0 1525330.0 False True 1403970.2639601713 1604205.0225257976 1989551.4487933316 1477411.839540154 1086511.67022839 1205544.8591668638 1560390.9629995131 1299963.2104813543 1892875.9027355413 1427982.133499285 0.9831847549238782 1.123406928484936 1.3932607433385145 1.0346150731730381 0.7608720338579321 0.8442296516782487 1.0927244300849612 0.9103497725813845 1.3255599340707642 1.0 20.445546498219738 3.4911730363836115 24.615934617323656 0.9731618881081754 1.1709033499724788 0.1746493188852476 0.17081356079825893 826.213092470283 1447359.0125213265 0.04614611001878619 0.06843340921620723 3098.6536529635546 -3.4911730363836115 0.1977414618643034 LKSEDEPTR ddPTM_BT-474_Trastuzumab_2h_R1 6 LKSEDEPTR 9 1 O14787-2;O14787;A0A075B780;K7ENW1;K7ESC1;E7EW37;Q92973-2;Q92973 O14787-2;Q92973-2 TNPO2;TNPO1 Transportin-2;Transportin-1 0 ;;;;; 147.91 8.324399999999999e-05 4349410000.0 6298470.0 6097090.0 5627430.0 5544590.0 5540850.0 6965170.0 6794630.0 6188260.0 8678770.0 6856900.0 False True 6264559.73734581 6300027.954881256 6419723.229501595 6246534.525500386 6246444.404309042 6483684.192146566 6465947.788892782 6650059.3845475605 6540003.423059897 6419286.77151256 0.9758965380930799 0.9814217963963615 1.0000679916639605 0.9730885607449706 0.9730745216165516 1.0100318653654465 1.0072688787775137 1.0359498837252639 1.0188053059232456 1.0 22.613981581880047 2.539810260543343 2.7564951248962597 1.0198944167945123 0.9814567442104694 0.666220196763619 0.01172013748315323 0.1545152458294038 2.32773671889464 0.004319844339568177 0.003833425191150574 346.5853972451395 -2.539810260543343 -0.03843767258404296 LKSEDGVEGDLGETQSR ddPTM_BT-474_Trastuzumab_2h_R1 3 LKSEDGVEGDLGETQSR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 161.22 2.7295e-09 958580000.0 341033.0 352026.0 335638.0 297293.0 318637.0 511039.0 441478.0 353788.0 684560.0 487712.0 False True 339196.9162203285 363742.9726057891 382892.9129822062 334930.26331786165 359213.53324053506 475712.0767864083 420122.0225302631 380189.4570590631 515859.3606340383 456585.80260874995 0.742898518268181 0.7966585262342942 0.8386001290327211 0.7335538280082367 0.7867382892506328 1.041889769827223 0.9201381648966147 0.8326791040956848 1.1298191001266855 1.0 18.800526474550466 2.760426077419131 22.32405317783728 0.9575268320580257 0.78134214613374 0.6174684374660122 0.0793059874173605 161.6833856767554 165073.52418186353 0.024829957662987102 0.026301915473022765 576.0047666970254 -2.760426077419131 -0.1761846859242857 LKSIS(ph)REPS(ph)PALGPNLDGSGLLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKSISREPSPALGPNLDGSGLLPR 24 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 LKS(0.287)IS(0.756)REPS(0.957)PALGPNLDGSGLLPR 89.145 0.005563 30542000.0 19159.0 21553.0 27587.0 26907.0 26301.0 28506.0 27931.0 24795.0 35272.0 27650.0 True False 19055.85007276501 22270.378575936367 31471.009809497446 30313.423441163144 29650.27645175958 26535.44731590617 26579.870823218364 26645.328806458823 26579.68822058523 25885.353327644018 0.736163413787151 0.8603467101278826 1.215784440380355 1.1710646966054818 1.1454460781918263 1.0251143563710947 1.0268305202089956 1.0293592855077314 1.026823465925022 1.0 14.659848390255954 4.41445804141938 5.590067083728942 1.0786275509638081 0.7640700770148869 0.7281161388570663 0.07061635469722544 0.0928128134036034 5.537510499547855 0.01907742594884093 0.055471337757809415 25969.16832830444 -4.41445804141938 -0.3145574739489212 LKTDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKTDLK 6 1 Q8IZT6;Q8IZT6-2;Q5VYL4 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 0 ; 90.777 0.044364 2973400000.0 4088000.0 4771400.0 3330900.0 3904500.0 4421400.0 5932000.0 6119800.0 5762900.0 8350800.0 6708400.0 False True 4065990.662219503 4930213.164627787 3799861.767298183 4398809.299662591 4984439.082309038 5521934.802425994 5823761.894093715 6192956.861413254 6292857.234987042 6280264.168649804 0.647423508475385 0.7850327680862086 0.6050480784337956 0.7004178775824158 0.7936671051499168 0.8792519954798583 0.9273116126492124 0.9860981473243793 1.0020051809922426 1.0 22.582393814234937 2.658592355002252 1.110302632065707 0.995542236611311 0.6798580846766913 0.8998481851691026 0.044615212055750565 0.13937670882209088 0.35553537425395404 0.023420948930104022 0.020033284258702284 455.6090635246008 -2.658592355002252 -0.31568415193461974 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK 37 1 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ; 264.82 1.0356999999999995e-62 647540000.0 694900.0 416470.0 422090.0 357340.0 395310.0 596540.0 496840.0 526740.0 721480.0 567480.0 False True 691158.7356106481 430331.9521885689 481516.60312795074 402579.20736110484 445650.38531405927 555302.5939041142 472805.9510868861 566048.0135315228 543680.9213366926 531262.9405559292 1.3009729887942103 0.810016884931324 0.9063621163261973 0.7577776965580059 0.8388508802208517 1.0452500099536948 0.8899659942252475 1.065476189510214 1.0233744532749995 1.0 19.019066552312847 1.93506960943372 1.6573004733318812 1.0333513330326956 0.9174199061308641 0.05410556968259228 0.14620127738664596 0.9312554820674337 4.76398195606653 0.09553222598018754 0.04443449752967756 86.11317647391765 -1.93506960943372 -0.11593142690183145 LKTEDSLMPEEEFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKTEDSLMPEEEFLR 15 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 88.133 0.0062956 107510000.0 71255.0 88927.0 81127.0 84215.0 78668.0 83384.0 85912.0 51292.0 97643.0 89984.0 False True 70871.3709971747 91886.88143749339 92548.976431475 94876.6103652416 88685.90349823289 77619.86034482275 81756.10834428905 55119.669495498536 73580.19099916656 84241.14408082166 0.8412916487598995 1.0907601320007756 1.098619652443024 1.1262502593057877 1.0527623344377528 0.9214008331885143 0.9705009260777793 0.6543081779921729 0.8734471949784195 1.0 16.362237409319057 2.2830891881446393 1.913380410916207 0.8139553532045782 1.0487923953984812 0.30000078140268016 0.11553848818442453 0.31319046187324934 2.3267580584343728 0.05473450077612269 0.036909809821647606 191.90628052615577 -2.2830891881446393 0.234837042193903 LKTEEGEIDYS(ph)AEEGENRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LKTEEGEIDYSAEEGENRR 19 2 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5;Q8WVV9-3;Q8WVV9-2 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 LKTEEGEIDYS(1)AEEGENRR 204.53 2.371e-16 332970000.0 241820.0 225180.0 210360.0 213290.0 229620.0 316400.0 268020.0 262000.0 401530.0 297850.0 True False 240518.0679887276 232674.9801758155 239976.8595181022 240292.49213088368 258860.74593563096 294528.0127254863 255054.84866417173 281551.770409043 302578.3117263434 278840.9579977855 0.8625636266485562 0.8344361669337809 0.8606227049327814 0.8617546498774834 0.9283454905419124 1.0562580721295092 0.9146965011725334 1.009721715312996 1.0851286478823046 1.0 18.089082963764813 3.0441250216017472 3.0118642031287415 1.005301832393697 0.8531620490356436 0.7524361774976545 0.042616166266469156 0.13068193240965092 2.4254648062634976 0.013270744868387243 0.015759287302436364 1106.9423968073427 -3.0441250216017472 -0.15213978335805345 LKTEGSDLCDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKTEGSDLCDR 11 1 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ;;; 126.1 0.00028689 1522890000.0 1536310.0 2640280.0 2467510.0 2050000.0 2589250.0 3329530.0 2378850.0 2051230.0 3246720.0 2794680.0 False True 1528038.6776600878 2728160.123717035 2814913.9600186 2309529.7898087627 2918975.6398128793 3099367.427970567 2263775.9374105125 2204303.1985348854 2446609.3598190756 2616321.1297540762 0.5840409498216748 1.0427466615971073 1.075905372626483 0.8827394173993653 1.1156794197076454 1.184628061411519 0.8652515593998579 0.8425201224217003 0.9351334329700755 1.0 21.31910819879551 4.743616324021153 24.813855412258285 0.985204180951121 0.5840407643632388 0.5640411582422398 0.10784429625500547 407.63261805545017 2000625.3193333384 0.02858601247763057 0.2392027482031634 55413.59471362133 -4.743616324021153 -0.4011634165878821 LKTEKEPDATPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 LKTEKEPDATPPSPR 15 2 R4GMW8;A0A1W2PS85;P28715;A0A494C0S2;A0A090HNM7 R4GMW8 BIVM-ERCC5;ERCC5;ERCC5-201 DNA repair protein complementing XP-G cells 1 LKT(0.001)EKEPDAT(0.03)PPS(0.969)PR;LKTEKEPDATPPS(1)PR;LKTEKEPDAT(0.003)PPS(0.997)PR;LKTEKEPDAT(0.003)PPS(0.997)PR;LKTEKEPDATPPS(1)PR 125.88 4.5766e-05 3734230000.0 5432790.0 4957250.0 4792530.0 4621410.0 4340700.0 6280720.0 6293400.0 5882830.0 8999870.0 6680030.0 True False 5403540.462279709 5122249.0695290975 5467276.566582482 5206480.032156152 4893462.415655407 5846548.609624575 5988964.198877324 6321836.647005445 6781972.630579456 6253704.766338592 0.8640542948821301 0.8190743344809452 0.87424603029085 0.8325433045993362 0.7824901555946688 0.9348936075611387 0.957666602861352 1.0108946429696493 1.0844727859691006 1.0 22.576279681424822 2.2245629954194457 1.5266302623492174 1.0340338420873931 0.8363776917270396 0.8493559701634177 0.035818086291593665 0.1408057842393721 0.6444795459843286 0.020236815832586578 0.0119721088377497 167.71155876024395 -2.2245629954194457 -0.19765615036035356 LKTLER ddPTM_BT-474_Trastuzumab_2h_R1 1 LKTLER 6 1 Q15750;Q15750-2 Q15750 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 0 85.84899999999998 0.049474 354010000.0 277550.0 350360.0 301350.0 305350.0 311490.0 369100.0 320880.0 304090.0 406820.0 333570.0 False True 276055.7016387041 362021.52080290794 343777.4606188448 344007.27869175945 351156.4051541235 343584.9857679423 305357.8085193621 326782.739937732 306564.6621087115 312281.277016355 0.8839969666969382 1.15928026253059 1.1008583796742968 1.1015943125970464 1.1244875405570103 1.100242028759053 0.9778293832946305 1.0464371833621569 0.9816940196919198 1.0 18.252486548869314 2.2462938624927853 24.992906405248693 1.008777812972715 1.0862545060514035 0.20902403934278513 0.07178683320837043 261.3799317687932 844749.2362876824 0.02412101519987706 0.019825747983992104 176.31686793141554 -2.2462938624927853 0.07747669307868854 LKVDSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKVDSFR 7 1 K7ESG5;K9J957;P61289;P61289-2;A0A087WTV2;K7ENH2;B7Z8D3 K7ESG5 PSME3 Proteasome activator complex subunit 3 0 ; 67.993 0.058057 1171170000.0 1116910.0 1157370.0 1332510.0 1061480.0 927420.0 1187630.0 1378640.0 1102050.0 1785580.0 1569120.0 False True 1110896.680660368 1195892.360805061 1520115.82561545 1195863.2591640025 1045521.4397509926 1105531.9334803063 1311949.916283761 1184290.5670965107 1345547.7345461699 1468977.4182087793 0.75623809249223 0.814098532748918 1.0348122488288671 0.8140787219331098 0.711734181064448 0.7525860641400152 0.8931042097866335 0.8062006620500634 0.9159757787065812 1.0 20.486380787622306 1.01524078021735 3.215037779713582 0.9997220720695368 0.8256225582511824 0.3097838407385183 0.08503438065573705 0.28290913507700005 6.903328707581046 0.08433485358805692 0.02207279546693374 10.357162261504305 -1.01524078021735 -0.17409951381835442 LKVPEWVDTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LKVPEWVDTVK 11 1 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 ; 177.83 7.1216e-06 7639400000.0 5612000.0 5557600.0 5005300.0 4599800.0 4551700.0 6100400.0 6377700.0 5822400.0 7937700.0 6027500.0 False True 5581785.615551814 5742581.356359852 5710002.733152491 5182134.208371886 5131332.014960429 5678693.706796958 6069186.285820051 6256897.053548129 5981560.194730645 5642819.789597626 0.9891837456588058 1.0176793820256556 1.011905916910321 0.918358976823077 0.9093559968758687 1.006357445131504 1.0755591197522238 1.1088245392990463 1.0600303425881998 1.0 22.4279848453985 2.3595193225175906 4.041279656188887 1.0744398808547724 0.9704551051106978 0.500585204574591 0.042226333593868175 0.1729526996174856 5.184932787821101 0.016376055969336407 0.01341080275247031 228.83335212524136 -2.3595193225175906 -0.10398477574407461 LKVPPAINQFTQALDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKVPPAINQFTQALDR 16 1 P62424;Q5T8U3 P62424 RPL7A 60S ribosomal protein L7a 0 ; 230.82 1.7362e-15 3250400000.0 613610.0 740450.0 638760.0 697080.0 607380.0 675120.0 745180.0 659070.0 803950.0 710820.0 False True 610306.3919384802 765095.4306385219 728691.8557985494 785330.2565267781 684726.2427766905 628450.5434615373 709132.7965359582 708253.1500896473 605827.2948780755 665454.85903638 0.9171266595336637 1.1497330288435006 1.0950282290428242 1.1801405397564986 1.0289597160177277 0.9443924481542938 1.0656362139466928 1.0643143414945408 0.9103957791447358 1.0 19.343981279036544 3.0204310564680363 24.97843308245655 1.0093404204445011 1.0924967047880958 0.21031387837397086 0.07874349049245108 380.8490025196432 465611.70934977365 0.02247120204701793 0.026855146053798993 1048.168385372229 -3.0204310564680363 0.08315628434359468 LKVSELKEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKVSELKEELK 11 2 Q00839;A0A1X7SBS1;Q00839-2;A0A1W2PPS1 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 93.348 0.0052401 495070000.0 424840.0 369820.0 365050.0 335480.0 306970.0 511200.0 505710.0 413170.0 944700.0 510680.0 False True 422552.7086441612 382129.23513908876 416445.8669285184 377951.73360246094 346060.80994626187 475861.94723536255 481246.8753001952 444002.84343474853 711891.3433314489 478087.9651848552 0.8838388317948538 0.7992864555612407 0.8710653629766594 0.7905485206186353 0.7238433826972734 0.9953439155310425 1.0066073826269994 0.9287053340969846 1.489038409607722 1.0 18.866916563898496 1.810554072989091 1.224044238901621 1.1918170615014667 0.8278692930486324 0.4879688291631137 0.14465302832424562 0.3770625349501271 1.051811916055031 0.11255945782408784 0.045887046020523556 64.64784805107897 -1.810554072989091 -0.3639477684528343 LKVTEGGEPYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LKVTEGGEPYR 11 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 119.39 0.00054097 1319910000.0 1433720.0 2013220.0 1802040.0 1991280.0 2008200.0 2179490.0 2414220.0 2072480.0 2772620.0 2314590.0 False True 1426001.0108212659 2080228.8106828125 2055751.5683875321 2243375.8438294604 2263932.3664660505 2028826.9862676023 2297434.9553839876 2227138.9814402023 2089344.9522045527 2166870.884579804 0.6580922845791958 0.9600151192608817 0.94871899521885 1.0353066533839612 1.044793385049829 0.9362934361735306 1.06025466110294 1.0278134231666902 0.9642221726606084 1.0 21.04718176072254 5.188713341089235 1.4239355938452798 1.010818431869308 1.320573878437728e-10 0.8691611916250059 0.03976248504023533 1.2021044123550264 0.9231300124288527 0.010381811852665072 2.3717734723225847 154423.48207878481 -5.188713341089235 -1.0108184317372506 LKVTELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LKVTELR 7 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 105.14 0.0072911999999999986 1522510000.0 2269400.0 2771600.0 2522600.0 2467500.0 2465100.0 2775100.0 2824000.0 2584900.0 3372300.0 2783100.0 False True 2257181.802554042 2863851.0305324225 2877760.1531677344 2779885.2470015236 2779015.873207577 2583263.868882733 2687392.3312723693 2777798.3638562374 2541241.8515048604 2605480.1752682133 0.8663208509432175 1.0991643911616453 1.104502801627148 1.0669377849767583 1.0666041137394184 0.9914732391378901 1.0314384107703771 1.0661368258425858 0.9753449193844893 1.0 21.31311784687197 1.2311035262746688 24.982522229469186 0.9876724364923187 1.0422743893537658 0.07683906365013482 0.0654524603437811 433.16837332373933 1451128.6336651593 0.05599899181889545 0.015099782487877036 17.025643139981767 -1.2311035262746688 0.05460195286144709 LKYALTGDEVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LKYALTGDEVKK 12 2 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 0 95.981 0.0032290999999999995 301210000.0 624110.0 701630.0 641630.0 620210.0 671940.0 850430.0 876080.0 813370.0 1696800.0 967010.0 False True 620749.8611051403 724983.3304057079 731965.9268520633 698728.5224084368 757507.576099591 791641.7757968877 833700.6634493985 874067.7996091723 1278646.3759551195 905294.593901087 0.685688244784729 0.8008258696007634 0.8085389350419984 0.7718244725150544 0.8367525678413106 0.8744576418882084 0.9209164277197586 0.9655064831908998 1.4124091589293475 1.0 19.788027813595185 1.5589060164797828 2.4823561944130246 1.2028653786159993 0.8104218052430296 0.6477357382234878 0.11291085532701649 0.14329296692605856 1.9239477926127297 0.07893634717765452 0.028717079757806883 36.21646156830737 -1.5589060164797828 -0.39244357337296965 LLAAGQLADALSQFHAAVDGDPDNYIAYYR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLAAGQLADALSQFHAAVDGDPDNYIAYYR 30 0 Q13217;X6R9L0 Q13217 DNAJC3 DnaJ homolog subfamily C member 3 0 ;; 239.39 2.6426999999999997e-46 279315400.0 155573.5 218634.2 218480.0 237232.9 242377.9 212552.4 231686.2 202595.8 244487.1 232445.7 False True 154735.90956184067 225911.30717983522 249240.0849377971 267266.5608159628 273243.2888786335 197859.15288253044 220478.65337876658 217714.5273566273 184236.53016429572 217610.81641922408 0.7110671799684083 1.0381437416448103 1.145347869370793 1.2281860121377315 1.2556512280723873 0.9092339992023083 1.0131787427055907 1.000476589073603 0.8466331462557758 1.0 17.731390742452213 LLAASGS(ph)NSPTRSES(ph)PEPAATCSLPSDLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLAASGSNSPTRSESPEPAATCSLPSDLTR 30 1 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 2 LLAAS(0.298)GS(0.345)NS(0.345)PT(0.143)RS(0.085)ES(0.783)PEPAAT(0.001)CSLPSDLTR 50.51300000000001 0.047063 59860000.0 36341.0 38835.0 35816.0 30113.0 38330.0 41659.0 40166.0 31765.0 47620.0 44964.0 True False 36145.344093864675 40127.59949874675 40858.58148174723 33925.30271244456 43211.09830029066 38779.21138473779 38223.01713097951 34135.46559940169 35884.68907530811 42094.35902438285 0.8586742958344549 0.9532773613562598 0.9706426806043107 0.805934654873675 1.0265294282129571 0.9212448480870137 0.908031812738593 0.8109273164042946 0.8524821355403503 1.0 15.361339293296792 1.980297844330359 20.815047210906226 0.8649661392201734 0.924773830314022 0.015876003321423804 0.07285955292235642 181.137785019034 191366.97535546758 0.02810180298298621 0.0185048157158144 95.56477559517711 -1.980297844330359 0.05980769109384865 LLAAVEAFYS(ph)PPSHDRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLAAVEAFYSPPSHDRPR 18 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 1 LLAAVEAFYS(0.993)PPS(0.007)HDRPR;LLAAVEAFY(0.01)S(0.848)PPS(0.142)HDRPR;LLAAVEAFY(0.006)S(0.867)PPS(0.128)HDRPR;LLAAVEAFY(0.187)S(0.782)PPS(0.031)HDRPR 136.96 3.1143e-06 308784000.0 247793.0 319794.0 294243.0 303423.0 282672.0 305032.0 292473.0 254195.0 320818.0 290551.0 True False 246458.9100203902 330438.1499704444 335669.8567939954 341836.3206893392 318668.60367179144 283945.8558080924 278324.96363464056 273164.3216760555 241756.7026409532 272007.78642677364 0.9060729961373316 1.2148113637158715 1.2340450293850689 1.2567152035604094 1.171542211559371 1.0438887045776999 1.023224251374758 1.0042518461124759 0.8887859638754708 1.0 18.05328842473047 2.4879295646628075 1.980283841195526 0.9776975021286587 1.1700010077107124 0.42582129269778024 0.09723678568746806 0.3185666486281766 2.5280618514981406 0.040828571598644336 0.03343392535201249 307.55979634852633 -2.4879295646628075 0.19230350558205367 LLAAVEAFYSPPSHDRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLAAVEAFYSPPSHDRPR 18 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ; 163.7 1.9505e-11 930330000.0 452840.0 577940.0 484120.0 511890.0 458620.0 494220.0 506780.0 458970.0 609330.0 523540.0 False True 450401.9597552533 597176.3835278928 552279.8879535259 576695.2215147355 517022.53854629054 460055.7346687414 482265.11531239864 493220.6720024368 459168.7861036854 490127.2289748551 0.9189490669541238 1.218410951737859 1.1268092350401928 1.1766235120642963 1.054874138757174 0.938645534203413 0.9839590351286935 1.0063115102461293 0.9368359049630398 1.0 18.902796772206287 2.9787373116542493 5.223629541374829 0.9781963651826703 1.1193109047344765 0.41781522493949586 0.0761288093387424 0.16684657041480744 13.304550863608695 0.021973451974275377 0.02451946892606467 952.2200278330456 -2.9787373116542493 0.1411145395518062 LLACIASRPGQCGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLACIASRPGQCGR 14 1 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ; 217.46 5.2434e-12 4671100000.0 857860.0 1186420.0 1063550.0 1269990.0 1181410.0 1084780.0 1106730.0 1073500.0 1529430.0 1115110.0 False True 853241.3770772053 1225909.2724939645 1213288.5954576808 1430770.6037849914 1331855.560734317 1009791.7118974498 1053193.2417808326 1153610.0211225485 1152522.4698120218 1043942.7251062987 0.8173258518472118 1.174307021842733 1.1622175874966114 1.3705451164854894 1.2757937085089623 0.9672865068288382 1.0088611342864542 1.10505106590506 1.1040092929376628 1.0 19.993611131354786 2.7317291497386043 24.673958434838642 1.0461968581671268 1.1726465325424396 0.15961904618690104 0.13882671114995754 891.1530122235899 3218665.5851779715 0.04640946153841811 0.044664566075523854 539.1742584986702 -2.7317291497386043 0.12644967437531274 LLAEDDELHLCLACR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLAEDDELHLCLACR 15 0 Q5T249;F2Z2C2;P56937-3;P56937-2;P56937 Q5T249 HSD17B7 3-keto-steroid reductase 0 ; 155.98 2.2073e-06 96373000.0 80698.0 99288.0 86138.0 85362.0 96542.0 120180.0 98477.0 82780.0 143302.0 120177.0 False True 80263.53093439076 102592.74105913646 98265.48167508209 96168.82044763706 108836.05145073471 111872.23947329 93713.29129132775 88957.46394832282 107987.14224842102 112507.20097129399 0.7134079440379096 0.9118771080734007 0.8734150421194316 0.8547792462828612 0.967369648441472 0.9943562590436678 0.8329537174712802 0.7906824023736948 0.9598242718345978 1.0 16.77965781786226 4.741650412091356 24.116013038366603 0.8962302931440211 0.7134078314810592 0.4119720718486707 0.0686510682280079 199.07599257166018 1553667.2921586526 0.01737435896818984 0.12222966054098326 55163.322009722615 -4.741650412091356 -0.1828224616629619 LLAETHYQLGLAYGYNSQYDEAVAQFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLAETHYQLGLAYGYNSQYDEAVAQFSK 28 0 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33;E9PRH9;H0YDS9 P49321 NASP Nuclear autoantigenic sperm protein 0 ;; 222.46 2.1588999999999995e-34 434203000.0 137080.0 135729.0 133532.0 134945.0 122856.0 159592.0 145019.0 130076.0 173674.0 151511.0 False True 136341.9765110197 140246.657715087 152332.14491904931 152029.02316377734 138500.98337543718 148559.78067915866 138003.87694362176 139782.93163254444 130874.36981237018 141841.43826490676 0.9612281021599899 0.9887565963139678 1.0739608028688332 1.071823756326018 0.9764493724095574 1.047365159973241 0.9729447094711641 0.9854872690410978 0.9226807864704939 1.0 17.113919544713916 2.211069575077402 19.787392182343147 0.9709658162947086 1.021351791349033 0.26858750779450546 0.040093106866644496 30.76044449288545 22138.61424463451 0.015469804851590553 0.011435014420063122 162.58091936445084 -2.211069575077402 0.05038597505432452 LLAHVTLELQHYHQLLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLAHVTLELQHYHQLLEK 18 0 P56192;H0YIP0 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 70.09100000000001 0.0089524 5679100.0 18992.0 21613.0 18278.0 17701.0 19401.0 20198.0 19549.0 9765.9 27466.0 15297.0 False True 18889.749182209558 22332.375639665595 20851.383524775963 19941.94478507559 21871.60235126376 18801.759800977794 18603.34018556784 10494.681048235387 20697.37232554415 14320.732363579406 1.3190491032602571 1.5594436843510504 1.4560277362493945 1.3925226921908054 1.5272684242663304 1.3129049076285073 1.2990494978371354 0.7328313093068857 1.4452733142462646 1.0 13.805817653596238 1.9620777914472227 7.858052844519544 1.0252775682392532 1.4276239291017307 0.458243333957602 0.17802236053735923 0.21494032213894748 39.70394366339736 0.07128455149430565 0.04549857375234129 91.63846195425056 -1.9620777914472227 0.40234636086247755 LLALLSLGEVGHHIDLSGQLELK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLALLSLGEVGHHIDLSGQLELK 23 0 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;;; 165.06 7.8494e-12 382246000.0 283538.0 361240.0 261472.0 288330.0 273695.0 341366.0 344636.0 208294.7 408066.0 315708.0 False True 282011.46291203354 373263.6550258084 298284.9848446344 324832.5484368587 308548.4359326389 317768.17190912866 327964.64004262915 223838.7082130548 307503.6021042562 295559.24514878273 0.9541622112685756 1.262906375464282 1.0092223124148243 1.099043774703579 1.0439478412435297 1.075142047237149 1.1096409448384323 0.7573395584373473 1.040412733323435 1.0 18.173087823503682 1.7695897779938101 24.999999999298844 0.9084145472299338 1.0827869687794596 0.29067139298688494 0.10275530028316499 25.544921154381388 20592.158057796536 0.043733403956852254 0.024257919497183745 58.82877132750341 -1.7695897779938101 0.1743724215495258 LLASSDPLAQIAEDKPYAELWMGTHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLASSDPLAQIAEDKPYAELWMGTHPR 27 1 H3BPB8;P34949-2;P34949;H3BPU7;H3BUG1;H3BU66;H3BPM5;H3BQX0;H3BT46;H3BMZ9;H3BPP3;H3BP57;H3BT48;H3BUZ9 H3BPB8 MPI Mannose-6-phosphate isomerase 0 147.16 8.274699999999999e-08 448180000.0 268060.0 265950.0 248040.0 238820.0 182330.0 323980.0 302680.0 220660.0 373970.0 311440.0 False True 266616.79474426596 274801.98497983033 282961.87599767087 269054.5875132337 205548.64474542142 301584.025166887 288038.2120501136 237126.7696887761 281810.10444126406 291563.6325628014 0.9144377589233046 0.9425111855150154 0.9704978412790293 0.922798859200249 0.7049872542013526 1.0343677725373628 0.9879085725414384 0.8132933713456192 0.966547514736988 1.0 18.15345125448117 1.0092237589084596 24.980114933585966 1.0000000630881394 0.9096827769462553 0.10172998897316687 0.08821996128554138 345.0322177913625 934424.281509043 0.08408838238616774 0.021022095613657775 10.214656316881252 -1.0092237589084596 -0.09031728614188406 LLASTLVHSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLASTLVHSVK 11 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 199.68 4.944e-08 1029910000.0 1152220.0 1310910.0 1201390.0 1197730.0 1164520.0 1345270.0 1314830.0 1302060.0 1722250.0 1381140.0 False True 1146016.5755436753 1354542.846888171 1370535.2693309218 1349362.4951939748 1312814.7193491915 1252274.6513249516 1251226.649761634 1399226.3289267106 1297824.564467648 1292994.4627465545 0.8863275200029306 1.0476014290199485 1.059969944820689 1.043594952702028 1.0153289570633854 0.9685073582333008 0.9676968353783989 1.0821595677637323 1.0037355935081373 1.0 20.30228466613886 4.744721990090511 24.621325593822167 1.0238273331060548 0.8863274443193033 0.5569043366023292 0.03594367911298594 442.57446869554855 1768500.9249351667 0.009129528115693298 0.08447715091950972 55554.85137753748 -4.744721990090511 -0.13749988878675146 LLCEQNEEEVSPQLFTFHEAVSQMVEMEEQVVEDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLCEQNEEEVSPQLFTFHEAVSQMVEMEEQVVEDHR 36 0 O00139-1;O00139-5;O00139;O00139-4;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 0 179.2 4.0188e-23 39575000.0 3321.1 3998.9 5086.6 4215.8 4394.4 4200.1 3304.9 4569.6 4882.6 3861.6 False True 3303.219566608896 4132.000969113905 5802.74906648022 4749.5198477442855 4954.000792350572 3909.756972971916 3145.029361055973 4910.606755958632 3679.3486534880212 3615.1493819179095 0.9137159264097883 1.1429682518186275 1.6051201357001035 1.3137824598618852 1.3703446992064197 1.0814925083117066 0.8699583416349649 1.3583413124006112 1.017758400770718 1.0 11.819839546803763 2.72331895411828 23.815171892936238 1.0935245570864005 1.2833147356176575 0.19683112333049724 0.20077438391321578 817.9419360839621 1278035.0360219928 0.0678425005766824 0.06422233811157534 528.8334945565266 -2.72331895411828 0.18979017853125701 LLDDAMAADKSDEWFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLDDAMAADKSDEWFAK 17 1 Q9HC38-2;F6TLX2;Q9HC38;I3L1I0 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 ; 262.5 2.1885e-27 2204300000.0 3211600.0 2628460.0 2328820.0 1924920.0 2104620.0 3055990.0 3035600.0 2780800.0 4185000.0 3181550.0 False True 3194309.1024423065 2715946.7021623747 2656697.6135336896 2168614.674633504 2372630.881939939 2844736.6043266677 2888756.4308818774 2988317.4166162806 3153662.826126933 2978500.755138004 1.0724553609503125 0.9118502647606466 0.8919580124164164 0.7280893486068714 0.7965856237729935 0.9550901067993388 0.9698692961211055 1.0032958398487368 1.0588088052980242 1.0 21.506154894171548 2.369969280330276 2.625276656479374 1.0100024544006323 0.8747285504514078 0.32718099902917375 0.0856159904121743 0.34712699865422225 4.89005617488456 0.03654084933957087 0.028775642496666892 234.40630029711951 -2.369969280330276 -0.13527390394922445 LLDDLFR ddPTM_BT-474_Trastuzumab_2h_R1 7 LLDDLFR 7 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ;;;;;; 197.62 0.00097263 877819700.0 1387067.0 1774404.0 1685349.0 1644736.0 1443380.0 1543000.0 1667363.0 1361210.0 2034418.0 1595474.0 False True 1379599.1853896303 1833463.9644901329 1922631.4898838864 1852959.4089614183 1627185.887416479 1436336.041831307 1586706.2817447942 1462790.402284324 1533062.9437045397 1493649.4833659849 0.9236431979212829 1.227506175249608 1.2872039332489023 1.2405583971319145 1.089402771893688 0.9616285867782579 1.0623016306135646 0.9793398106949972 1.0263873557869383 1.0 20.510410198080308 3.0089342693880177 5.06207398183009 1.0082489964288248 1.1815701330937958 0.396764166054525 0.09472273918870913 0.17551226895605868 13.139334373988804 0.028551186004023284 0.032993134593623144 1020.7849758753638 -3.0089342693880177 0.17332113666497095 LLDEEEATDNDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLDEEEATDNDLR 13 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ;;; 303.31 9.5157e-41 2359290000.0 1502910.0 1814300.0 1573840.0 1590060.0 1664560.0 1740410.0 1635180.0 1597920.0 1937660.0 1667080.0 False True 1494818.499549 1874687.8787324901 1795422.9919374865 1791361.4329674738 1876531.8493799057 1620099.5531844627 1556080.0964057927 1717164.9044733483 1460149.6563137646 1560685.527141006 0.9577960925205307 1.201195145422217 1.1504066390789771 1.147804219245269 1.2023766586837603 1.0380691849896861 0.9970490975567321 1.10026323343883 0.9355822367293869 1.0 20.57374843774862 2.614219723947267 6.809010785340522 1.0241095580139916 1.1374115014528055 0.3796464687646425 0.07471085785416579 0.27605959989300016 14.186323372470609 0.023506019715780334 0.02211241105222319 411.35778798106406 -2.614219723947267 0.11330194343881383 LLDEVFFSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLDEVFFSEK 10 0 P25789;H0YN18;H0YMZ1;H0YL69;H0YLC2;H0YMI6;H0YMA1;H0YKT8;H0YLS6 P25789 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type 0 ; 178.55 5.1277999999999986e-06 80651000.0 221520.0 231850.0 208446.0 201845.0 193446.0 247640.0 243830.0 217090.0 325260.0 246030.0 False True 220327.36093318556 239566.98709371532 237793.38495488864 227398.55630436598 218080.20145572713 230521.2296818564 232035.01137894538 233290.3581606833 245104.03126070375 230328.15476311967 0.9565802372696495 1.0401116065905938 1.0324112794610218 0.9872807626937027 0.9468238986241655 1.0008382601724712 1.0074105426563293 1.0128607959396458 1.0641514126346399 1.0 17.81333124794039 1.587373496832591 2.979340191847905 1.0332298340503272 0.9967632495118733 0.17365995890499808 0.031008115436875563 0.3806436311234282 7.805647482303031 0.021356376798187422 0.008472545727446018 38.66993987598292 -1.587373496832591 -0.03646658453845386 LLDGFFIRPFYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDGFFIRPFYK 12 1 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;K7ERN1;Q96PU5-5;Q96PU5-6;Q96PU5-9;P46934-4;H0Y8X6;P46934-3;P46934-2;P46934 Q96PU5-7;Q96PU5-5;P46934-4 NEDD4L;NEDD4 E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4 0 119.76 0.00043989 104720000.0 133020.0 200930.0 203120.0 165480.0 153850.0 170290.0 174860.0 152740.0 291770.0 177190.0 False True 132303.83509991143 207617.83358525013 231717.53044931055 186429.75103295335 173441.8855596067 158518.2531195417 166401.35376993153 164138.23439800454 219867.1930176952 165881.58250000895 0.797580015249157 1.2516026822039688 1.396885217497235 1.123872513290879 1.0455765067203728 0.9556109287752493 1.0031333874568176 0.9894904058923821 1.3254466813257182 1.0 17.339794190080188 3.3453828492935784 4.600355231090359 1.0407435871976718 1.1733510442334676 0.052759461308155564 0.17085020848213128 0.4920267632651401 17.70390807203464 0.0482584388835947 0.0658480134065485 2215.0465080948156 -3.3453828492935784 0.1326074570357958 LLDGPSTEKDLDEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLDGPSTEKDLDEK 14 1 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 0 ;; 143.93 8.2021e-06 700990000.0 837940.0 751790.0 612110.0 651440.0 658180.0 907850.0 927730.0 879870.0 1569110.0 871490.0 False True 833428.6241438865 776812.8756833484 698289.7674445026 733912.2372063514 741995.3216615005 845092.4663490294 882852.155627237 945530.3672893292 1182423.8654967817 815870.7620798728 1.0215203962196833 0.9521273610823417 0.8558828185782454 0.8995447211950736 0.9094520310667292 1.0358165847182252 1.0820980437840557 1.1589217450064264 1.4492783912031202 1.0 19.637981114779354 2.109458534855432 1.490222881298952 1.2243562819454497 0.92575445661145 0.5296674203832135 0.11135642181732502 0.292902578907044 1.236960915792059 0.06731396234751885 0.03543234539369791 128.66444021868892 -2.109458534855432 -0.2986018253339997 LLDHMAPPPVADQAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDHMAPPPVADQASPR 17 0 A0A0C4DFS6;Q9C004 A0A0C4DFS6 SPRY4 Protein sprouty homolog 4 1 LLDHMAPPPVADQAS(1)PR 83.60600000000002 0.0025944 0.0 78913.0 93946.0 83204.0 73940.0 92484.0 88267.0 67294.0 75500.0 80778.0 70825.0 True False 78488.14117605852 97072.93581844372 94918.39997786732 83300.7964187609 104261.28920438528 82165.31004816848 64038.73213195571 81134.19338123176 60871.34426974465 66304.88786366684 1.1837459304273668 1.4640389109478742 1.4315445367019444 1.2563296478238573 1.5724525380204655 1.2392044190937046 0.9658221919269255 1.2236532779914548 0.9180521411167394 1.0 16.016827606399346 2.4595921984026794 6.237094460931777 1.0648489913656183 1.3846966356592532 0.6289821404749552 0.12710225267659667 0.10664810708675994 15.600172528051242 0.0416826624336608 0.035605378738696486 288.1324674714476 -2.4595921984026794 0.3198476442936349 LLDIACWIHHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLDIACWIHHK 11 0 A0A1B0GW44;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GV23;A0A1B0GU92;A0A1B0GU03;C9JH19;F8WD96;F8W787;A0A1B0GV01 A0A1B0GW44 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 ; 67.334 0.034845999999999995 1442550000.0 2100680.0 2218820.0 2408900.0 2053240.0 1879120.0 2096930.0 2316670.0 1403120.0 2918200.0 1945950.0 False True 2089370.1722874893 2292672.082394984 2748052.18146585 2313179.973476558 2118414.7935831524 1951974.1647422712 2204603.821561178 1507827.9392989913 2199048.71187661 1821757.8049883845 1.146897884321572 1.2584944475698854 1.5084618679503183 1.2697516470864285 1.1628410690940663 1.071478414637404 1.2101519837184036 0.8276774965202387 1.2071026707584935 1.0 20.796899740995595 2.8840501689464673 1.4752427497253062 1.0303282204181787 1.3097589400212564 0.4026549789512246 0.1319715695707431 0.36802710619586365 1.630721367357916 0.05259664962026574 0.0570007952022755 765.685052413915 -2.8840501689464673 0.27943071960307764 LLDIDETEY(ph)HADGGKVPIK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLDIDETEYHADGGKVPIK 19 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 LLDIDETEY(1)HADGGKVPIK;LLDIDETEY(1)HADGGKVPIK;LLDIDET(0.005)EY(0.995)HADGGKVPIK 256.96 6.7145999999999995e-31 388637000.0 636570.0 889920.0 948960.0 570270.0 901040.0 1604640.0 803310.0 500094.0 1231800.0 644670.0 True False 633142.7778495759 919540.4492319993 1082565.3194918144 642466.1235289001 1015782.1031175028 1493715.0137162574 764450.8263577945 537413.5537058772 928239.3952743505 603526.6086702457 1.0490718532602623 1.5236121092623058 1.7937325445799943 1.0645199636590175 1.6830775785604255 2.474977892039209 1.2666398057280592 0.8904554430333471 1.5380256345607473 1.0 19.20305785328845 -0.26972535455650526 8.776138312981791 0.9999890187380152 1.458843246620361 0.09629915025347202 0.43460748447731246 0.0 0.0 0.44350425995736287 0.10453495656699091 0.5373715197350497 0.26972535455650526 0.45885422788234576 LLDIDETEYHADGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 LLDIDETEYHADGGK 15 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 ;;;;; 314.17 2.942899999999999e-56 2536740000.0 2730570.0 2879500.0 3336700.0 2479930.0 3261820.0 4601410.0 3203220.0 2754520.0 3849870.0 3233470.0 False True 2715868.914514849 2975342.4168054922 3806478.356883679 2793888.883727051 3677193.4426781707 4283325.357254044 3048268.0111112907 2960076.269569144 2901121.1241150033 3027107.1762870564 0.8971829394709567 0.9828995947394711 1.2574640193455495 0.9229567111508543 1.2147549553195824 1.4149896610227792 1.006990447840763 0.9778564474878851 0.9583807097551851 1.0 21.529508324754072 2.0250219087730024 24.9999710344843 0.9803195573464691 1.1196166013414603 0.15384779054972864 0.14933738562239607 425.07044756223166 424695.8664574268 0.058263243813042515 0.04302863013039852 105.930716250093 -2.0250219087730024 0.1392970439949912 LLDIDETEYHADGGKVPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDIDETEYHADGGKVPIK 19 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 194.49 1.7983e-15 248770000.0 355500.0 390030.0 507860.0 362840.0 454920.0 700670.0 531620.0 431070.0 693330.0 518100.0 False True 353586.02749976283 403011.9127718864 579362.2736017471 408775.50679717684 512851.3654779082 652234.3320997676 505903.50961438386 463238.63232910726 522468.1116460182 485034.414432274 0.7289916281788589 0.830893439269884 1.1944766316837179 0.8427762951122609 1.0573504687872377 1.3447176379498738 1.043026009209134 0.9550634316769494 1.077177404530274 1.0 18.88772758827133 4.395940454767882 5.797246057480708 1.0574340156352828 0.7528496901993526 0.45007556234599033 0.12757886589529538 0.16704490191188706 8.897127291267033 0.0319865780439987 0.09143163262346914 24885.160995156504 -4.395940454767882 -0.3045843254359303 LLDLSDSTSVAS(ph)FPSADETDGNLPESR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDLSDSTSVASFPSADETDGNLPESR 27 0 Q13464 Q13464 ROCK1 Rho-associated protein kinase 1 1 LLDLSDS(0.001)T(0.001)S(0.003)VAS(0.996)FPSADETDGNLPESR 126.05 4.5628e-05 48317000.0 30997.0 33486.0 27168.0 35457.0 32218.0 35261.0 25175.0 25124.0 39657.0 36264.0 True False 30830.11559609044 34600.56126728556 30993.018251510748 39945.85256451187 36320.7713289529 32823.49006546578 23957.18907216075 26998.880457086983 29884.063726574834 33949.60047282762 0.9081142389515325 1.019174328575058 0.9129126063299849 1.1766221695740868 1.0698438515652962 0.9668299363857568 0.7056692490780698 0.7952635695579449 0.8802478765690709 1.0 15.051106976132509 2.4153999332512153 7.169929033425539 0.8209740919343609 1.02033384085053 0.3885572304642605 0.10029011153456903 0.19444584484584357 18.629573371709316 0.034761325968022935 0.029057528781575973 260.2555101827143 -2.4153999332512153 0.19935974891616914 LLDLSSNQLIDENQLYLIAHLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDLSSNQLIDENQLYLIAHLPR 23 0 Q15813-2;Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8Y7E7;A0A2U3TZJ6;A0A2R8Y6Q1;A0A2R8YFL4 Q15813-2 TBCE Tubulin-specific chaperone E 0 199.28 2.6397e-24 129410000.0 73656.0 86409.0 74013.0 84728.0 68920.0 83037.0 84600.0 70814.0 92580.0 75816.0 False True 73259.44427995084 89285.07132965642 84433.38706747156 95454.55611264244 77696.55347915555 77296.84763807268 80507.5747966157 76098.50026620588 69764.8995084424 70977.35797065684 1.0321523141258293 1.2579373744309879 1.189581994618307 1.3448592458471738 1.0946667458554393 1.089035290240423 1.1342712253377873 1.0721517740582314 0.9829176726651943 1.0 16.115071252714554 1.942622806580947 0.7896013459027403 0.9922900253156957 1.197803320350847 0.4292010647912743 0.08256611383220908 0.5920317061043521 0.6929226238815184 0.07143985198810592 0.03583136390806443 87.62394591165784 -1.942622806580947 0.20551329503515126 LLDPEDISVDHPDEK ddPTM_BT-474_Trastuzumab_2h_R1 5 LLDPEDISVDHPDEK 15 0 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;;;; 264.87 3.6753000000000005e-25 1606910000.0 1897800.0 1851050.0 1703850.0 1618090.0 1654980.0 2201080.0 2081450.0 1904960.0 2690830.0 2094970.0 False True 1887582.4556654033 1912661.0802666442 1943737.2698703092 1822940.0280934968 1865731.893165015 2048924.5203849985 1980762.3115888375 2047117.7883908756 2027711.001774701 1961267.2210059464 0.9624300225123072 0.9752169718543647 0.9910619262138863 0.9294705018108136 0.9512889794834124 1.0446942152707228 1.009940048135252 1.0437730088309414 1.033877984630098 1.0 20.903354684229875 2.740955434461153 24.98930161755603 1.0289554656510418 0.9624530319941121 0.727794222603366 0.019711357210958572 107.67043091008551 1123519.5268420412 0.006223614245586657 0.006310805394283182 550.7511776528095 -2.740955434461153 -0.06650243365692965 LLDPEDVDVPQPDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDPEDVDVPQPDEK 15 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 158.4 4.2453e-06 54078000.0 89558.0 78579.0 77654.0 79111.0 74513.0 100500.0 98012.0 89181.0 128990.0 93286.0 False True 89075.82967882931 81194.45451299148 88587.00821933214 89126.44448856646 84001.78887684735 93552.67155155308 93270.78511780025 95836.13907194225 97202.14287744641 87332.40761383723 1.0199630596776978 0.929717349280163 1.014365808063399 1.0205426247111156 0.9618627399840266 1.0712251512087054 1.0679974097384453 1.0973720030221366 1.1130134337673452 1.0 16.414229493058482 2.6947504937432827 8.336190678383614 1.0776331201356726 0.9891390995851909 0.5213901683956059 0.038273069244197655 0.24791839664291 44.24321265572265 0.011894220088633193 0.011255277459913915 495.16563176796615 -2.6947504937432827 -0.08849402055048172 LLDSDQELYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDSDQELYR 10 0 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 0 75.294 0.060253 0.0 43389.0 50286.0 50801.0 48509.0 45749.0 50491.0 50465.0 39601.0 43342.0 47614.0 False True 43155.39844497109 51959.73911147108 57953.33922979234 54650.23442626015 51574.86397443253 47000.67601302946 48023.81515497884 42556.22770980343 32660.944853045028 44575.233755603695 0.9681474399345329 1.165663861604294 1.3001241798873762 1.2260223855671848 1.157029579636223 1.0544123283957172 1.0773654136797792 0.9547056543355436 0.7327150550038141 1.0 15.443954743011968 1.8999603830290048 1.3785539434839509 0.8682874037864494 1.1668799902033822 0.5408529742914274 0.10414921835641218 0.3127766641515895 1.1060193412147037 0.07828820568042433 0.034141193705287926 79.42557782582837 -1.8999603830290048 0.29859258641693276 LLDSSTVTHLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLDSSTVTHLFK 12 0 G3V5Z7;P60900;G3V3I1;G3V295;P60900-2;G3V3U4 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 ; 240.21 3.3641000000000003e-16 6035400000.0 6757700.0 7822900.0 7655900.0 6883500.0 6301300.0 7764400.0 8477000.0 7434700.0 10448200.0 8102600.0 False True 6721317.294051046 8083280.497457097 8733784.173724284 7754950.394218839 7103733.20426876 7227665.303431622 8066935.124715251 7989515.066641643 7873381.108707146 7585485.131015136 0.8860761280210377 1.0656247237776002 1.1513810946664496 1.0223407284144295 0.9364902944998714 0.9528283529130551 1.0634699014479096 1.0532635591063952 1.0379535353005802 1.0 22.854810020558283 -0.5462984406303256 5.670171624585948 0.9999981892184937 1.0240364971917706 0.0014229018404311455 0.07233256671855325 0.0 9.409612756579311e-11 0.07161068809426495 0.01687880092653964 0.28425071080502623 0.5462984406303256 0.024038307973276885 LLDSVEQDFHLEIAK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLDSVEQDFHLEIAK 15 0 Q6IBS0;H0Y858;H7C5I2;Q9NR96-4 Q6IBS0 TWF2 Twinfilin-2 0 ;; 207.39 3.4157e-09 227944000.0 431216.0 449966.0 436402.0 399924.0 407180.0 544316.0 500540.0 452885.0 650132.0 533002.0 False True 428894.3809686012 464942.84629980946 497843.6083258165 450554.3373948689 459031.95945505815 506688.7161020406 476326.96795151266 486681.578403433 489915.6799224743 498985.3560340302 0.8595330018850316 0.9317765354783296 0.9977118612913045 0.9029410020684888 0.9199307232249772 1.0154380483812937 0.9545910760535982 0.9753424073836786 0.9818237629584117 1.0 18.928637951147465 6.005286668631295 0.9004211761113537 0.9684232176344764 1.1306240845029365e-42 0.4840448286880503 0.03385695604176451 16.0264206500313 1.6870700744656288 0.010722467679329778 25.52578649166069 1012247.3969537684 -6.005286668631295 -0.9684232176344764 LLDTVDDMLANDIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLDTVDDMLANDIAR 15 0 A0A024R571;Q9H4M9;C9J2Z4 A0A024R571 EHD1 EH domain-containing protein 1 0 ;;; 185.27 1.0005e-06 93139000.0 88539.0 117298.0 107045.0 112945.0 100662.0 114195.0 120534.0 103268.0 124621.0 117760.0 False True 88062.31586160774 121202.19302186178 122116.00554818063 127243.82541948835 113480.70902958162 106300.96843611538 114703.30993540504 110974.3825442787 93909.82438584567 110244.4559805916 0.7987913322109458 1.0993949032974435 1.1076838691070234 1.154197045898521 1.0293552453064827 0.9642296067462071 1.0404451535921082 1.0066209820457148 0.8518326255097887 1.0 16.750346581190897 1.4207257516408802 6.296134357681407 0.9248988007801564 1.034635573097491 0.14134750586980138 0.09773040618571179 0.35208208402180535 24.81360483005776 0.06377741004270882 0.02418844643312732 26.346671203287706 -1.4207257516408802 0.10973677231733459 LLDVTCSSLSVTQEEAEELLQALHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDVTCSSLSVTQEEAEELLQALHR 25 0 Q9P000;E9PJ95 Q9P000 COMMD9 COMM domain-containing protein 9 0 172.24 6.1085e-12 136420000.0 77845.0 149880.0 129050.0 123720.0 110130.0 157310.0 145500.0 119460.0 130610.0 119080.0 False True 77425.89116939249 154868.66519562664 147219.1182772916 139382.9393147026 124154.40270834879 146435.52996790854 138461.60913602333 128374.71180558861 98422.91558433414 111480.21245048281 0.6945258666759669 1.3892031759844023 1.3205851966122082 1.2502930901447071 1.1136900439931938 1.3135562513657046 1.242028572537257 1.1515470681634195 0.8828734124278024 1.0 16.76642813137192 1.350442073584217 4.718035014576931 0.9440260634516858 1.204768127149366 0.21572022761823773 0.18411498118091207 0.28275864399540174 9.316553648057367 0.1274025174162403 0.04395465317706511 22.41001119994152 -1.350442073584217 0.26074206369768016 LLDVVHPAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLDVVHPAAK 10 0 Q99832-3;Q99832;F8WAM2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 117.67 0.00092646 2010820000.0 6680200.0 6992300.0 6571400.0 6127800.0 6173700.0 7596100.0 7360100.0 7125000.0 9786000.0 8256400.0 False True 6644234.545439992 7225034.478565396 7496596.000367263 6903578.851702504 6959884.100613218 7070999.486296031 7004063.844687601 7656703.6800169125 7374371.425681762 7729469.483340328 0.8595977459721665 0.9347387287235995 0.969871996587219 0.8931504117562139 0.9004349025006397 0.9148104538786876 0.9061506562363398 0.9905859252720707 0.9540591940463801 1.0 22.8819379666542 1.7430038270927612 8.168980617972622 0.9784697614216449 0.9134201439148383 0.5508370388250621 0.028977716081433687 0.09407596648410634 22.3267095360098 0.014025686475384542 0.007508205255278307 55.33549854727848 -1.7430038270927612 -0.0650496175068066 LLDWLVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLDWLVDR 8 0 J3QQY1;Q96JB5;J3KRI2;J3KRK4;J3KS63;J3QS62;Q96JB5-4;J3QL95 J3QQY1 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 0 ; 134.15 0.002068 125452000.0 181571.0 251500.0 217800.0 222650.0 236880.0 226330.0 224930.0 199735.0 222230.0 191755.0 False True 180593.44191043443 259871.0254650397 248464.34684846303 250837.4671711811 267045.26390223973 210684.33982351224 214049.2765839569 214640.2399337794 167464.39422943545 179517.03173028494 1.0059961451555568 1.447612089840492 1.384071162795115 1.3972906345067662 1.487576200031323 1.1736175547958847 1.192361942044334 1.1956539046181716 0.9328607576413254 1.0 17.453761201087726 1.6763037828478262 1.0379399647672845 0.9712085846175847 1.3434143911513496 0.4781820611904575 0.13741762680948236 0.41496435481364613 0.8430578517355506 0.11821609322327507 0.04614167082620067 47.45738268674132 -1.6763037828478262 0.3722058065337649 LLDYTEKPLYENLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLDYTEKPLYENLR 14 1 Q99986;H0YJ50;H0YJJ9 Q99986 VRK1 Serine/threonine-protein kinase VRK1 0 80.632 0.014368 425370000.0 132510.0 119170.0 122960.0 94936.0 107150.0 145100.0 143890.0 104680.0 172230.0 135480.0 False True 131796.58088324513 123136.50141021385 140271.69921252082 106954.88786599274 120794.9173721928 135069.57852865997 136929.49098682083 112491.75315426929 129786.22426376137 126833.5504097364 1.0391302652766214 0.9708511747279863 1.1059510575819442 0.8432696831435724 0.9523893085225812 1.0649357215998214 1.0795999208763727 0.8869242624752215 1.0232799116991234 1.0 16.95257689662804 LLEAQIATGGIIDPEESHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLEAQIATGGIIDPEESHR 19 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 224.86 1.8691e-19 570320000.0 751905.0 947450.0 858703.0 870520.0 860937.0 834151.0 815787.0 751273.0 771278.0 827212.0 False True 747856.8270244985 978985.3005043806 979600.9184197228 980727.7427435735 970572.2237766075 776488.1047502435 776324.2662010243 807336.8061469953 581206.8714957056 774418.6219481756 0.9657009863000755 1.2641551646079796 1.2649501066430684 1.2664051650467727 1.2532914321390876 1.0026723050601 1.002460741773041 1.0425069636316449 0.7505073548381177 1.0 19.562754119029265 2.6652786187830655 4.804069637745583 0.9688711929840013 1.2131959371140217 0.538059118725287 0.11256730206658104 0.17821522301243034 7.7540338040268795 0.0368913982336446 0.03492236723721242 462.67775409123664 -2.6652786187830655 0.24432474413002048 LLEAQIATGGIIDPEESHRLPVEVAYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEAQIATGGIIDPEESHRLPVEVAYK 27 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 237.13 2.841e-45 669080000.0 623190.0 616640.0 573040.0 541770.0 590230.0 667550.0 723420.0 636260.0 796880.0 697090.0 False True 619834.8142829174 637164.4896332483 653719.0510470297 610358.0264510704 665392.2919327046 621403.839743674 688425.4108672312 683740.9520628144 600499.601644929 652601.1193912243 0.9497912214142801 0.9763459955870502 1.0017130397460063 0.9352696590843115 1.0196002920641822 0.9521954855415318 1.0548946215560056 1.047716486757851 0.9201633031293327 1.0 19.315841936489303 2.254229166700868 24.984515826887726 1.015361566970581 0.9744398237708152 0.11489269874691288 0.04163170960926043 403.4432899315253 643315.8287975356 0.014271320080377979 0.0119012945010347 179.5680914295679 -2.254229166700868 -0.040921743199765936 LLEAQIATGGIIDPVHSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEAQIATGGIIDPVHSHR 19 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 Q15149-3;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 ; 96.391 0.00074243 224050000.0 156252.0 190153.0 181752.0 190193.0 181479.0 204962.0 194511.0 50634.0 197747.0 157770.0 False True 155410.7565932292 196482.12765508422 207341.1017832958 214271.4142990725 204589.27493969354 190793.45936865077 185101.75982582147 54412.56619424224 149014.90152404376 147700.9835263075 1.0521985221956798 1.3302695958019002 1.4037895810380003 1.450710815753694 1.3851585145555478 1.2917548334041251 1.2532195480800734 0.3683967763461144 1.0088957972138501 1.0 17.172319907335737 1.8841649659452469 7.679408718739395 0.7363205078153683 1.3270648825237286 0.5930670815982833 0.1951704568131563 0.1571700769783999 9.47160508664314 0.08031801287009561 0.0500488847379568 76.58874725868459 -1.8841649659452469 0.5907443747083603 LLEAQIATGGVIDPVHSHR ddPTM_BT-474_Trastuzumab_2h_R1 6 LLEAQIATGGVIDPVHSHR 19 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 Q15149-3;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 ;;;;; 186.05 1.2371e-14 2067910000.0 1600647.0 1872201.0 1732688.0 1845956.0 1727589.0 1921792.0 1956518.0 401571.0 1926210.0 1468118.0 False True 1592029.2944006 1934516.0785155986 1976635.4096059192 2079653.8403298655 1947587.2189277557 1788943.0424517621 1861873.7497154227 431538.26715621975 1451521.3553916267 1374421.4523209443 1.1583268667061242 1.407513012292437 1.4381581473921512 1.5131121802690262 1.4170232977948094 1.3015971479714812 1.3546599891695028 0.31397812252384016 1.056096259950313 1.0 20.39039302904147 1.7666118894227079 24.999999999999996 0.7258609694246573 1.378791702514226 0.6157478635043755 0.20805144472117462 10.724775595769938 9563.866043431946 0.09024407897823855 0.05005092060875467 58.426771546814976 -1.7666118894227079 0.6529307330895687 LLECPHLNVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLECPHLNVR 10 0 Q8TEX9;Q8TEX9-2;H0YN14;H0YMR4 Q8TEX9 IPO4 Importin-4 0 176.6 2.4469e-06 339350000.0 161420.0 204640.0 212070.0 192550.0 165630.0 165970.0 187440.0 162580.0 233890.0 198100.0 False True 160550.932655448 211451.3186925079 241927.61265451566 216926.81025740367 186721.99873407636 154496.8845513559 178372.81110966473 174712.5451645121 176250.943465431 185457.088398057 0.8657039428487547 1.140163045365287 1.304493749709112 1.1696873499480454 1.0068205014267473 0.8330600134288236 0.9618009893847417 0.9420645318744394 0.9503597030873991 1.0 17.500725884910732 3.0727794939915736 4.743982860108406 0.9350268272190196 1.133169744658966 0.3821034966146415 0.10873674245308536 0.2075715757233775 8.841972633923087 0.03300324361180076 0.03957534085985422 1182.4410379483309 -3.0727794939915736 0.19814291743994628 LLEDFGDGGAFPEIHVAQYPLDMGR ddPTM_BT-474_Trastuzumab_2h_R1 7 LLEDFGDGGAFPEIHVAQYPLDMGR 25 0 Q13573;G3V3A4;G3V5R3 Q13573 SNW1 SNW domain-containing protein 1 0 ;;;;;; 227.3 5.5263999999999996e-34 1315723000.0 1123586.0 1354603.0 1220984.0 1351067.0 1289494.0 1369710.0 1315006.0 1236074.0 1472686.0 1312839.0 False True 1117536.7378181391 1399690.141980193 1392887.9342168227 1522111.9436719806 1453703.4174702584 1275025.171650525 1251394.1359692467 1328316.1185365922 1109762.2682813783 1229052.4910419828 0.9092668913356977 1.1388367479679773 1.1333022343382106 1.2384433982811782 1.1827838339417205 1.0374049773655858 1.018177942024529 1.0807643515782261 0.902941311595674 1.0 20.22911510175469 2.5931116518203017 5.755489961187918 1.0169160169898155 1.128452067913583 0.2801137882578023 0.08979641032284054 0.33375560323396486 14.60678283307241 0.030092385455590866 0.028224445791941416 391.8426021188407 -2.5931116518203017 0.1115360509237675 LLEDGEDFNLGDALDSSNSMQTIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEDGEDFNLGDALDSSNSMQTIQK 25 0 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 0 191.42 6.9129999999999986e-18 70730000.0 46624.0 41168.0 44369.0 40593.0 39534.0 54436.0 51446.0 52766.0 60594.0 52570.0 False True 46372.98156441337 42538.25199341849 50615.76953773852 45732.06963790597 44568.42056362361 50672.96744856057 48957.36043719493 56703.66686031887 45661.420618001284 49214.93759255862 0.9422541982746523 0.8643361969811852 1.0284635521998855 0.9292314869219854 0.9055872615870679 1.029625758505938 0.9947662809715189 1.1521637460918481 0.9277959670704807 1.0 15.58680864470576 2.677111194753933 6.352434848997381 1.0387705754788028 0.93518437700808 0.2849647036670683 0.06585148599133674 0.25709376126432676 21.190172925273295 0.02137577751349478 0.020206233955413464 475.45694416077026 -2.677111194753933 -0.10358619847072281 LLEDS(ph)DS(ph)EDEAAPSPLQPALRPNPTAILDEAPKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPK 35 2 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 2 LLEDS(1)DS(1)EDEAAPSPLQPALRPNPTAILDEAPKPK 147.16 4.8336e-11 364350000.0 157270.0 105930.0 97658.0 101450.0 127740.0 142850.0 148430.0 152320.0 216140.0 159660.0 True False 156423.2757943395 109455.81601396287 111407.39754144728 114293.55959809708 144006.93182570132 132975.11573272996 141249.87384233662 163686.8918652878 162875.19312761648 149470.36210819683 1.0465170056998303 0.7322911008587194 0.7453477463365147 0.7646570061519193 0.9634480695340746 0.8896420257313187 0.9450025533496088 1.0951127003144614 1.0896822007410158 1.0 17.18949992087726 2.2704090048608667 1.1498896860862748 1.0735101611374678 0.8241730440395512 0.4721315454488637 0.09601758538420362 0.3905390356739511 1.0000784716910636 0.06324637871507359 0.03686111521722386 186.3841617692032 -2.2704090048608667 -0.24933711709791662 LLEDS(ph)EES(ph)SEETVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEDSEESSEETVSR 15 0 O60231;A0A140T947;A2AB15 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 2 LLEDS(1)EES(0.725)S(0.275)EETVSR;LLEDS(1)EES(0.553)S(0.447)EETVSR 332.39 9.479799999999999e-69 3021400000.0 2402970.0 2761110.0 2476160.0 2633920.0 2481770.0 2840390.0 2828760.0 2678030.0 3075600.0 2677980.0 True False 2390032.6765150675 2853011.877223755 2824781.8048314494 2967374.001938099 2797808.698896751 2644040.5248588594 2691922.071887404 2877878.1973607983 2317659.5909285513 2507069.0236659753 0.9533174611284652 1.137986968165688 1.1267267786272979 1.1836028341968186 1.1159679579964814 1.0546341165320596 1.0737327319178178 1.1479054506256094 0.9244498532152661 1.0 21.257570285771173 1.237097326956694 24.999889445990963 0.9622248885449703 1.1041562168038095 0.4334522964545997 0.06245279992232899 34.03077152374309 581305.4989323136 0.048995563755696414 0.014786792419934573 17.26224701815295 -1.237097326956694 0.14193132825883914 LLEDS(ph)EESSEETVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEDSEESSEETVSR 15 0 O60231;A0A140T947;A2AB15 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 LLEDS(1)EESSEETVSR 158.65 1.899e-06 159100000.0 155600.0 228820.0 189840.0 208930.0 218310.0 225330.0 233430.0 186710.0 189350.0 231120.0 True False 154762.26688878515 236436.1353753891 216567.82188113945 235380.51657792434 246110.4844752534 209753.4674697654 222138.09911080386 200643.2482941695 142687.22966000816 216369.723728213 0.7152676641727639 1.0927413101122316 1.000915553939401 1.08786253696747 1.1374534303348212 0.9694215246733946 1.026659808420501 0.9273166542755404 0.6594602387126994 1.0 17.7231391136985 1.5027446061521954 4.8068105205356675 0.8180768990292963 1.0128599227167194 0.209527946341865 0.13322106912370854 0.20860559515157553 10.55853832542511 0.07708277274613425 0.03234969431189661 31.823255536880055 -1.5027446061521954 0.19478302368742317 LLEEALLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLEEALLR 8 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 135.77 0.001907 260364000.0 279620.0 345527.0 358272.0 327823.0 292036.0 327653.0 328302.0 332885.0 428980.0 367171.0 False True 278114.5569887022 357027.65731951775 408713.58344395057 369325.35818755074 329225.05356701545 305003.1193221991 312420.7780245688 357726.5690557792 323263.6270374984 343737.832429092 0.8090891684029953 1.0386626772983076 1.1890270574981359 1.0744390734579297 0.9577795124862483 0.8873132095086352 0.9088926168434385 1.0406959470472976 0.9404365668832303 1.0 18.390949120601782 3.222283375004341 23.980812286408447 0.9571702163726915 1.0400959629301427 0.11265078411275176 0.09645111190339785 306.07976376259705 450937.5453820391 0.02929777409226084 0.03512876723260756 1668.335438114549 -3.222283375004341 0.08292574655745122 LLEEDVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLEEDVKR 8 1 P12270 P12270 TPR Nucleoprotein TPR 0 ;; 96.027 0.014804 627440000.0 413663.0 422243.0 384353.0 388896.0 365142.0 458016.0 443753.0 393577.0 626060.0 470569.0 False True 411435.8843702803 436297.10300371604 438466.56154383527 438130.19372559455 411640.66933380516 426354.4319736927 422286.9720889191 422947.7142835103 471775.90177420055 440536.8835456102 0.9339419688514754 0.990375878387819 0.9953004570579603 0.9945369164083477 0.9344068220139998 0.9678064377770786 0.9585734767318259 0.9600733334277587 1.0709112435198769 1.0 18.748903286955326 1.2537365781083136 24.999817039910535 1.0354556253978178 0.9676700727418146 0.5215090498806028 0.026266960366887943 154.71566797654594 254870.24326791623 0.017205934267747837 0.0062307942649359955 17.936453588589437 -1.2537365781083136 -0.06778555265600317 LLEEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLEEFR 6 0 Q6N069;Q6N069-5;Q6N069-4;Q6N069-3;Q6N069-2 Q6N069 NAA16 N-alpha-acetyltransferase 16, NatA auxiliary subunit 0 ;; 126.16 0.040975 365826000.0 1150050.0 1943170.0 1223460.0 1227690.0 1115160.0 1276590.0 1302950.0 1093900.0 1355820.0 1239310.0 False True 1143858.2585825678 2007847.238778932 1395712.533495045 1383115.42812211 1257169.0159288342 1188342.3380696222 1239921.33074764 1175532.3727116496 1021696.3280572074 1160216.1747733266 0.985900975571251 1.7305802853258865 1.2029762761820897 1.1921187259713317 1.0835644626092629 1.0242421747841868 1.0686985388648675 1.0132011587765664 0.8806085885303383 1.0 20.145962206760633 3.441332379776877 1.4489114953651192 1.0048444650397585 1.3582340578557859 0.36866778954217794 0.17750773317197824 0.38956624065398127 1.6645427222341813 0.054771957060016516 0.09825303552115668 2762.691425466984 -3.441332379776877 0.35338959281602733 LLEEFVNHIQELQIMDER ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEEFVNHIQELQIMDER 18 0 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 EXOC5 Exocyst complex component 5 0 ; 200.48 1.5081e-15 163414000.0 108167.0 164901.0 143383.0 143439.0 141474.0 127288.0 149336.0 111127.0 152469.0 134567.0 False True 107584.64089048335 170389.63010024052 163570.0800926224 161598.3626928681 159489.87531790562 118488.88016372219 142112.04716108023 119419.8610314722 114895.05792992767 125978.81885139504 0.8539899156967846 1.3525260171015938 1.2983935044316466 1.282742322608136 1.266005482286989 0.9405460476930808 1.1280630224729762 0.9479360270264178 0.9120188534666148 1.0 16.942821664457227 2.740401078222 24.951543291992852 0.9915347993177183 1.2274796486029824 0.3915850912712596 0.13936759740883709 161.16089939801935 2184903.4290054245 0.04258881096906512 0.043096395573409836 550.0486184704906 -2.740401078222 0.23594484928526416 LLEEGVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEEGVLR 8 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 109.86 0.012882 0.0 72229.0 104000.0 86633.0 89223.0 82096.0 89720.0 91663.0 78519.0 103180.0 87482.0 False True 71840.12708939624 107461.57713067243 98830.17337246508 100518.62265175981 92550.43897888508 83517.86757816255 87228.9105033354 84378.48649140318 77752.67154116539 81898.82386289167 0.877181425824443 1.312126011853062 1.2067349530918599 1.2273512354712186 1.1300582183429821 1.019768827425182 1.0650813575707379 1.030277145770283 0.9493747025150515 1.0 16.321555113230662 2.827115365724522 3.4728285102503564 1.0194953227590855 1.1714532332655025 0.2819665676667421 0.10886337042114633 0.3057337326416257 7.028448666650993 0.033615940902781555 0.03550213439353013 671.6072345734732 -2.827115365724522 0.15195791050641705 LLEEHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLEEHAK 7 0 P51572;P51572-2;A0A2R8Y5M6 P51572 BCAP31 B-cell receptor-associated protein 31 0 ;;; 117.17 0.005291399999999999 1684890000.0 2545670.0 3309820.0 3566600.0 2450190.0 3643430.0 4552200.0 3143510.0 2807310.0 4432410.0 3534950.0 False True 2531964.395570528 3419985.3578715594 4068746.278557063 2760383.8027763586 4107399.214198489 4237517.128726167 2991446.411925643 3016805.7274313364 3340101.946751079 3309346.464577042 0.7650949885944116 1.0334322484752765 1.229471233099517 0.8341175009396169 1.2411511632776244 1.2804694745878629 0.9039387214200225 0.9116016590353907 1.0092935213956111 1.0 21.658114908590605 LLEEHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLEEHSR 7 0 P30038-2;P30038;P30038-3 P30038-2 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 0 ;;; 194.25 0.00048478 1519630000.0 1498560.0 1821080.0 1871060.0 1678070.0 2088870.0 2867070.0 1622410.0 1336940.0 1995300.0 1889200.0 False True 1490491.9194656687 1881693.5469338933 2134488.984454935 1890513.489943608 2354875.2127975007 2668876.199256826 1543927.83009193 1436709.2516437634 1503585.0506501936 1768629.6385745055 0.8427382912495957 1.0639274079170786 1.2068603499007897 1.068914287486067 1.3314688171207525 1.5090079579396334 0.8729514627699655 0.8123290599165431 0.8501412720087996 1.0 20.754200540171812 2.055377866783705 24.99996201706154 0.8606363532936266 1.17174566366056 0.3999533028461465 0.17111436786937123 84.83051623897259 38295.663416233016 0.06734560603278268 0.04973801964373916 113.59987847521646 -2.055377866783705 0.31110931036693346 LLEEIEFLEGAEGVDHPSHTLQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEEIEFLEGAEGVDHPSHTLQHR 24 0 J3KRA9;Q96Q15-2;Q96Q15;Q96Q15-4;Q96Q15-3 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 0 76.733 0.0078238 16240000.0 5099.9 10255.0 8030.1 10020.0 6775.6 7256.3 9054.3 2794.8 10460.0 7140.9 False True 5072.442705052157 10596.331475721589 9160.668281119575 11288.53097262626 7638.432497872407 6754.6890604928785 8616.308918215098 3003.3621677068436 7882.273156819047 6685.161648367933 0.7587614139877241 1.5850523941045616 1.3702986947751659 1.6885950656678828 1.1425950335452546 1.010400258928955 1.2888706917533732 0.4492579724590598 1.1790699419726625 1.0 12.706746730018747 2.4788377567636357 1.429939067680729 0.864866592335064 1.3564307976634722 0.20648627210308312 0.31293290686608954 0.5019836600823658 2.077955935042265 0.1525658968814888 0.114411231850437 301.18806390611235 -2.4788377567636357 0.49156420532840817 LLEELEEGQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLEELEEGQK 10 0 I3L0A0;Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-8;Q15819;E5RIF1;D6RG00;H0YBX6 I3L0A0 TMEM189-UBE2V1;UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 0 ;;; 183.47 3.8725e-06 416246000.0 859780.0 783450.0 660520.0 638210.0 666060.0 900250.0 836440.0 815620.0 1111690.0 873340.0 False True 855151.0400105382 809526.6596444739 753515.4746572397 719007.3205628536 750878.7929530813 838017.8364605536 795978.2016889035 876485.70603444 837728.8953828064 817602.693496009 1.0459249300586024 0.9901223003351389 0.9216156950697691 0.8794091877173633 0.9183908014568528 1.0249695152999692 0.9735513447067539 1.072019102929629 1.0246161149503303 1.0 19.641040423509477 2.724584498554332 23.96152493280148 1.0236579547644584 0.9476408859833249 0.3302397707931437 0.048025699372696386 538.2073787394844 922734.4937731588 0.01690256980026089 0.016018230591036936 530.3767754074937 -2.724584498554332 -0.07601706878113357 LLEENETEAVTVPTPS(ph)PTPVR ddPTM_BT-474_Trastuzumab_2h_R1 6 LLEENETEAVTVPTPSPTPVR 21 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 LLEENETEAVTVPT(0.001)PS(0.999)PTPVR;LLEENETEAVTVPTPS(0.987)PT(0.013)PVR;LLEENETEAVTVPT(0.001)PS(0.997)PT(0.003)PVR;LLEENETEAVTVPT(0.001)PS(0.996)PT(0.004)PVR;LLEENETEAVTVPTPS(0.997)PT(0.003)PVR;LLEENETEAVTVPT(0.002)PS(0.986)PT(0.012)PVR 328.0 5.481699999999998e-80 3638880000.0 3113990.0 3704650.0 3307580.0 3522700.0 3242840.0 3425960.0 3572150.0 3120460.0 3604810.0 3588710.0 True False 3097224.6238368126 3827957.0357417823 3773258.513999258 3968673.458809432 3655796.4521814403 3189131.449042375 3399351.4575618277 3353324.570574814 2716452.87747924 3359675.455350794 0.9218820880165706 1.1393829810689537 1.123102086539273 1.1812669144838726 1.0881397625354046 0.9492379521251669 1.0118094746764434 0.9981096731334971 0.8085462163176731 1.0 21.67989044471803 2.7672983831349995 6.361236160151507 0.9618932479235601 1.1008717352311048 0.39945243129265595 0.0833853521260174 0.19794604718200798 28.430540535334018 0.025768763456565247 0.026807202554218645 585.1920037221927 -2.7672983831349995 0.1389784873075447 LLEEQLQHEISNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEEQLQHEISNK 13 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 0 ; 208.68 4.3992000000000014e-08 571520000.0 863060.0 903270.0 782060.0 771390.0 721530.0 887970.0 962220.0 808940.0 1037070.0 943050.0 False True 858413.380854981 933334.7959117541 892167.2502126215 869047.8949076014 813412.568656632 826586.7239565426 915673.7425626427 869307.2105140887 781497.9945260361 882863.7416142756 0.9723056236123275 1.0571674335670356 1.0105378759595844 0.9843510996596003 0.9213342108368213 0.9362562816830227 1.037163153725597 0.9846448206431047 0.8851852870264023 1.0 19.751831268520863 3.6530955203296305 3.658200814900799 0.9651486518957498 1.0181444270092437 0.21205920337428075 0.04437192515730365 0.3776017035158253 9.54640469259157 0.012375031638883682 0.020366997380731642 4498.787920128483 -3.6530955203296305 0.05299577511349385 LLEFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEFDR 6 0 Q15650;H0YL91 Q15650 TRIP4 Activating signal cointegrator 1 0 ; 132.72 0.034376 178064000.0 186649.0 250050.0 231450.0 208356.0 208673.0 231790.0 236031.0 189377.0 241980.0 212931.0 False True 185644.10252265327 258372.76309158324 264036.148200536 234733.84823677788 235246.26964822767 215766.90287496996 224613.27880401895 203509.273376921 182347.27136587686 199341.5612805991 0.9312864880261228 1.2961309294045815 1.3245413876781613 1.1775459504220473 1.180116520292966 1.0823979780676547 1.12677595861631 1.020907391662571 0.9147478839558171 1.0 17.604883007505595 1.962663080438552 1.0281596030970779 0.9574104796942315 1.195331496860327 0.39939697300666066 0.10428865949111804 0.5034100632858756 0.9783009049957775 0.08341510463854286 0.038245718844700176 91.76204432238355 -1.962663080438552 0.23792101716609548 LLEFYDATAHFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEFYDATAHFAK 13 0 P83436 P83436 COG7 Conserved oligomeric Golgi complex subunit 7 0 ; 187.44 6.9569e-06 383990000.0 460380.0 532570.0 492210.0 486680.0 426240.0 514150.0 527450.0 490120.0 650150.0 504280.0 False True 457901.36523302656 550296.2705046372 561508.8896339854 548293.6380995756 480519.1374775863 478608.0206789148 501935.2284453308 526695.243178931 489929.2440636618 472096.4186641716 0.9699318764770322 1.1656438150107922 1.189394512296476 1.1614018162878872 1.017841098725653 1.0137929494003963 1.0632049060350641 1.115651850673323 1.0377736934542934 1.0 18.848722013097767 3.239577695321139 24.999794618358877 1.0519328821468807 1.1295824583238425 0.26113723416732293 0.06409389261210419 40.24578283729791 989220.40741461 0.01872715549924357 0.023986910039239782 1736.1118256495886 -3.239577695321139 0.07764957617696178 LLEGEEER ddPTM_BT-474_Trastuzumab_2h_R1 6 LLEGEEER 8 0 P20700;E9PBF6;P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8;Q03252 P20700;P02545;P02545-2;Q03252 LMNB1;LMNA;LMNB2 Lamin-B1;Prelamin-A/C;Lamin-A/C;Lamin-B2 0 ;;;;; 187.8 0.00046603 12658560000.0 4778040.0 5773770.0 5189530.0 5185400.0 5405580.0 5618010.0 5602550.0 5133220.0 6065720.0 5489860.0 False True 4752315.563530153 5965946.444132335 5920170.715796616 5841871.10832896 6093948.571617151 5229650.192073043 5331533.252680603 5516286.942362998 4570904.582483783 5139492.434694387 0.9246663214152085 1.1608045969401435 1.1518979337010447 1.1366630426174251 1.1857101939638364 1.0175421519778962 1.0373657166396113 1.0733135640253193 0.8893688706744027 1.0 22.2931944582946 1.7746351186913063 1.0771215409531487 0.9636379508262808 1.1109375012493126 0.29963199834400045 0.08103405350964178 0.601525309076151 1.2961226426564247 0.06775200109428911 0.027508079464893326 59.51618960856918 -1.7746351186913063 0.14729955042303178 LLEIVER ddPTM_BT-474_Trastuzumab_2h_R1 4 LLEIVER 7 0 Q12792;Q12792-3;Q12792-4 Q12792 TWF1 Twinfilin-1 0 ;;; 130.04 0.008379799999999998 429289000.0 502847.0 603833.0 543907.0 565469.0 529396.0 561960.0 534218.0 497219.0 617573.0 571518.0 False True 500139.7276235541 623931.2163802435 620484.3778756055 637057.317421158 596811.4426240725 523113.027911549 508375.83442905993 534324.0066069226 465380.40920422634 535043.2319388225 0.9347650764802884 1.1661323405948336 1.1596901723757387 1.1906651264658925 1.115445270583878 0.9777023550339243 0.9501584247442424 0.9986557622095439 0.8697996375317919 1.0 19.02929594162141 2.722279215019098 4.447327389191161 0.9600598615261797 1.1241290625641902 0.5194467011897828 0.0739489080209458 0.16083228276361558 8.22422773277007 0.023762127849589646 0.023376090040180465 527.5689351023697 -2.722279215019098 0.16406920103801048 LLELDPEHQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLELDPEHQR 10 0 P13674;P13674-2;P13674-3 P13674;P13674-2 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 0 ;;; 157.24 9.5133e-06 787370000.0 844110.0 1086340.0 949310.0 909680.0 886320.0 1357350.0 1262410.0 861070.0 1211560.0 1062620.0 False True 839565.4055494386 1122498.1701936019 1082964.5964495598 1024845.3947284087 999187.59836978 1263519.5893582138 1201342.4054254796 925327.4158248636 912987.2720722444 994802.6818452488 0.8439516909947787 1.1283626297744715 1.0886225140052703 1.0301996701772396 1.004407825395482 1.2701208113095603 1.2076187844579616 0.9301617624396465 0.9177571479589843 1.0 19.924050871295638 1.6295780520492162 10.410202009743319 0.9426086082253323 1.0857764732971042 0.2291661038353222 0.11091123204086205 0.142904503404345 38.32021741672881 0.05514128910319368 0.029057939438299485 42.61652677554493 -1.6295780520492162 0.14316786507177193 LLELER ddPTM_BT-474_Trastuzumab_2h_R1 4 LLELER 6 0 Q08379;Q08379-2;A0A1W2PRP4;Q8IXS0 Q08379 GOLGA2;FAM217A Golgin subfamily A member 2;Protein FAM217A 0 ;;; 143.09 0.026623 669660000.0 1072980.0 1556160.0 1385190.0 1414130.0 1387610.0 1213860.0 1106830.0 1058870.0 1096110.0 1201920.0 False True 1067203.194899284 1607955.8448814154 1580212.711712683 1593158.7130059854 1564313.9084911665 1129948.7153190856 1053288.404398796 1137888.256232912 825988.377621503 1125212.4365845183 0.9484459646915065 1.4290242380916278 1.4043683311120143 1.4158737152265009 1.3902387297100105 1.0042092307021986 0.936079597196738 1.0112652679940777 0.7340732743131748 1.0 20.10176597278766 2.654466994332983 4.451483210630612 0.9363801853950161 1.3339688659058349 0.6181214197577745 0.149875882368095 0.1486868525071934 5.322857035015228 0.048921858408534656 0.04621929014895883 451.301725848008 -2.654466994332983 0.39758868051081875 LLELFPVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLELFPVNR 9 0 E7ETZ4;Q9Y6E2;Q75MG1;B5MCH7;B5MCE7;E9PFD4 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 92.439 0.023439 44473000.0 51994.0 65160.0 60006.0 64920.0 68998.0 66296.0 74231.0 57685.0 72506.0 69885.0 False True 51714.07008107648 67328.81120994827 68454.32321849813 73138.86534360243 77784.48631681332 61713.113563997555 70640.16294004237 61989.74761849474 54637.8678306235 65424.87946844131 0.7904343195010631 1.02910103552312 1.0463041548516436 1.1179060005587336 1.1889129479303642 0.943266752119365 1.0797140707628927 0.9474950221099978 0.8351237063719608 1.0 15.997551740963498 -1.0016156355713268 7.109182323987335 0.9999999994484291 1.0069048217105672 0.0 0.11693671105625762 8.412934448460203e-10 2.3706035633584813e-10 0.113098916597688 0.02665766810559266 0.09962867727597524 1.0016156355713268 0.006904822262138066 LLELLGHYQESGSVIIFVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLELLGHYQESGSVIIFVDK 20 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ; 148.24 1.1265999999999998e-07 40042000.0 82670.0 76034.0 70328.0 63149.0 67975.0 90555.0 86975.0 74752.0 91728.0 80682.0 False True 82224.91390550049 78564.74572647641 80229.57109806576 71143.65692518726 76631.21333060936 84295.14599354114 82767.68697323467 80330.37382296466 69122.86349222735 75532.80568466453 1.0885986977469666 1.0401407046160798 1.0621817946629621 0.9418908284990609 1.0145421269074855 1.116007081021957 1.0957846226284036 1.0635163502111795 0.9151369774453036 1.0 16.20481575669081 1.2505273281108193 24.989446605035607 0.9575684865916517 1.0525531539977233 0.368773291430213 0.04985326164811182 213.10325160854728 445017.95239764027 0.035776299278770456 0.012840998151637119 17.804399400473077 -1.2505273281108193 0.09498466740607159 LLELQELVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLELQELVLR 10 0 Q08379;Q08379-2;A0A087WYC0;Q9NVV4-2 Q08379;Q9NVV4-2 GOLGA2;MTPAP Golgin subfamily A member 2;Poly(A) RNA polymerase, mitochondrial 0 120.09 0.0014095000000000002 96873000.0 87294.0 111070.0 109760.0 104480.0 100900.0 109170.0 111600.0 106250.0 125070.0 111300.0 False True 86824.01880327515 114766.89780676716 125213.25394897748 117707.15728742412 113749.01691884511 101623.33485853761 106201.48164659941 114178.91452656791 94248.17435213755 104196.73871127593 0.8332700224318945 1.1014442412135432 1.2017003170889762 1.129662585827997 1.0916754048707615 0.9753024529887725 1.0192399777585988 1.0958012308134912 0.9045213460403462 1.0 16.668950597363207 2.7561604785703935 23.40555330653349 1.0140532250578553 1.0836702811198073 0.10193302482004851 0.09976605500561643 900.6214786100861 1197706.5559735252 0.031244129111586253 0.03305004056674916 570.3749957837631 -2.7561604785703935 0.06961705606195201 LLEMNLMHAPQVADAILGNQMFTHYDR ddPTM_BT-474_Trastuzumab_2h_R1 7 LLEMNLMHAPQVADAILGNQMFTHYDR 27 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;; 250.82 1.4765e-46 19965619000.0 1617729.0 1935411.0 1838832.0 1914301.0 1665362.0 1896154.0 1996001.0 1692131.0 1977727.0 1875462.0 False True 1609019.3268105895 1999829.9851543463 2097723.562185736 2156651.3103222945 1877435.9793260808 1765077.3370464041 1899446.8061657196 1818406.4076871139 1490342.68103406 1755768.4094961989 0.9164188842378606 1.1390055626574227 1.1947609666742198 1.2283233361859638 1.0692959100823516 1.0053019108328054 1.0818322028648117 1.0356755468728864 0.8488264585314528 1.0 20.74367113144934 1.789762860741838 1.0672437948998743 0.9390643797626668 1.1135878588038823 0.30433689432756805 0.09326709624943214 0.615314582698716 1.299177887464576 0.08120816075281895 0.03331358459353644 61.62584123479304 -1.789762860741838 0.17452347904121557 LLEPFEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEPFEVR 8 0 Q8WUY1 Q8WUY1 THEM6 Protein THEM6 0 ; 103.92 0.010888 57968000.0 57533.0 85048.0 85628.0 70384.0 93140.0 91308.0 75558.0 59649.0 82694.0 83117.0 False True 57223.24872051724 87878.77126739828 97683.67810808175 79294.60718336591 105000.82691596854 84996.09287591248 71902.9708804101 64100.31127148467 62315.17174282928 77812.40189995624 0.7354001074801602 1.1293671589830168 1.255374152743339 1.019048445327717 1.3494099186267066 1.0923206429894343 0.9240554092245613 0.823780139236657 0.8008385581381768 1.0 16.24771249277691 2.1724914851052355 3.6940512433713617 0.8599440796506341 1.1146727080251064 0.29288130009454183 0.15904973063745198 0.25722892654187346 7.040097330438045 0.06307647297736131 0.04550886998402613 148.76182071497163 -2.1724914851052355 0.2547286283744723 LLEPPVLTLDPNDENLILEIPDEKEEATSNS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEPPVLTLDPNDENLILEIPDEKEEATSNSPSK 34 1 P21675-10;P21675-11;P21675-8;P21675-6;P21675-7;P21675-3;P21675-5;P21675-9;P21675;P21675-2;P21675-12;P21675-4 P21675-10 TAF1 Transcription initiation factor TFIID subunit 1 1 LLEPPVLTLDPNDENLILEIPDEKEEAT(0.007)S(0.037)NS(0.919)PS(0.037)K 231.07 2.7246999999999998e-37 70762000.0 120020.0 73302.0 68989.0 58612.0 56710.0 114190.0 104950.0 92681.0 179170.0 106880.0 True False 119373.82565547554 75741.81275800525 78702.05153686239 66032.27319037635 63931.68235349557 106296.31407434675 99873.1675520663 99597.32684458191 135015.95425499702 100058.8268954284 1.1930364302615026 0.7569728239684752 0.7865578078295281 0.6599345129179534 0.6389409544078569 1.0623382001613626 0.9981444981005411 0.9953877127569285 1.3493657525697593 1.0 16.610488917607938 2.712367478335961 22.492651733221493 1.0667443012784257 0.794988524855677 0.3851812554313775 0.17224855538941303 233.8361786363565 200799.47664299997 0.05613739003861588 0.05295443282271531 515.6647898668422 -2.712367478335961 -0.27175577642274873 LLEPPVLTLDPNDENLILEIPDEKEEATSNSPS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEPPVLTLDPNDENLILEIPDEKEEATSNSPSK 34 1 P21675-10;P21675-11;P21675-8;P21675-6;P21675-7;P21675-3;P21675-5;P21675-9;P21675;P21675-2;P21675-12;P21675-4 P21675-10 TAF1 Transcription initiation factor TFIID subunit 1 1 LLEPPVLTLDPNDENLILEIPDEKEEAT(0.242)S(0.242)NS(0.242)PS(0.275)K 57.825 0.022197 11947000.0 16342.0 9257.5 7887.0 6242.2 7134.6 14856.0 14398.0 11829.0 22497.0 13841.0 True False 16254.016487766885 9565.630291223071 8997.421044967068 7032.461879972817 8043.149019912698 13829.039687262408 13701.51373429872 12711.740046444906 16952.915794355456 12957.655530123728 1.2543948594697425 0.7382223017879326 0.6943710630406884 0.5427264109332027 0.6207256398516019 1.0672485971797059 1.0574068512969559 0.9810216066396331 1.3083320323606087 1.0 13.661517089976023 2.7220182763909526 23.58542907732044 1.0711495939087075 0.7514800443784704 0.3849965244547551 0.19664186639978148 418.7481411313604 597033.3654164353 0.06493989946311338 0.0614197709894349 527.2520492751356 -2.7220182763909526 -0.3196695495302371 LLEPVDHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEPVDHGK 9 0 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ; 98.048 0.0062778 927670000.0 844600.0 881300.0 792940.0 781800.0 731920.0 969750.0 940570.0 831010.0 1228720.0 973710.0 False True 840052.767443881 910633.5377428989 904579.059641967 880775.7998402403 825125.6735702782 902713.4650459546 895071.0357736748 893024.185983276 925918.420004464 911566.9941649291 0.9215480297347085 0.9989759870333114 0.9923341514472409 0.9662216880143887 0.9051728275069477 0.9902875716478906 0.9819037344519412 0.9796583155156469 1.0157436874430519 1.0 19.797989163172726 1.6950444666514537 1.2657459917814418 1.0057191266559535 0.9633251018083929 0.26316293106304633 0.02882089834361597 0.6637535381819187 2.0156121478310065 0.024671139319160904 0.009342978819342013 49.55009216792592 -1.6950444666514537 -0.04239402484756061 LLEQALVIEEQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLEQALVIEEQLR 13 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;Q12873-3;Q12873;Q12873-2;H7C0J3;I3L229;H7C3H7 Q14839-2;Q12873-3;H7C0J3 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 0 ;; 174.73 4.5302e-05 50058600.0 57017.1 64214.0 63232.1 63838.5 58080.9 59458.5 63510.9 57479.0 63144.9 62549.9 False True 56710.12626879532 66351.32417181724 72134.63005673414 71920.44755449117 65477.158342534654 55348.27384525388 60438.63513180117 61768.37485244795 47583.68549331002 58557.911830336394 0.9684451596072144 1.1330889729138771 1.2318511333828714 1.2281935148724379 1.118160745421487 0.9451886536804455 1.0321173218559077 1.0548254355690387 0.8125919112549179 1.0 15.837576487718332 2.8368971974939754 5.132533672709019 0.9847518339115525 1.14897937326665 0.4458033636931198 0.09212921048661363 0.23021991809182787 9.48109948764451 0.029398996541367413 0.031241941742155558 686.9058222484073 -2.8368971974939754 0.16422753935509748 LLEQALVIEEQLRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEQALVIEEQLRR 14 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;Q12873-3;Q12873;Q12873-2;H7C0J3;I3L229;H7C3H7 Q14839-2;Q12873-3;H7C0J3 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 0 ; 192.4 6.0533e-07 303020000.0 213003.0 298970.0 260810.0 287070.0 239420.0 275830.0 271130.0 224210.0 324970.0 266730.0 False True 211856.21551485825 308921.0357188184 297529.7809988411 323413.0325660497 269908.7178464806 256762.5213339789 258014.40608281782 240941.68871531103 244885.4978749031 249707.06304095802 0.8484189951812003 1.2371337516718455 1.1915152794458161 1.2951697426075695 1.080901415280388 1.0282549408378714 1.0332683542895909 0.9648973712681517 0.9806911141906144 1.0 17.92987710335232 2.8328206665985216 3.0288924650525018 0.9968937881803663 1.1553535385588247 0.2532473457306791 0.11249692144491506 0.33507898390414953 5.946222925418013 0.03631331498606382 0.03839897073577843 680.488306350154 -2.8328206665985216 0.15845975037845839 LLEQGLR ddPTM_BT-474_Trastuzumab_2h_R1 8 LLEQGLR 7 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;;; 168.74 0.0024144 4160091000.0 2521100.0 3045850.0 2928900.0 2881340.0 2667190.0 2838520.0 2902120.0 2414820.0 3167030.0 2864680.0 False True 2507526.6777205425 3147229.275994793 3341263.661544825 3246117.3485695575 3006840.836826305 2642299.793557354 2761733.368424993 2595026.1306074983 2386557.892527786 2681853.669824061 0.9349975749739713 1.173527590788077 1.245878438164012 1.2104006214412564 1.121180051939062 0.9852512921522292 1.0297852561829641 0.9676240578695485 0.889891167210608 1.0 21.354799090840068 2.768363730739365 3.4093171113198806 0.9745208867230507 1.1526866431108564 0.48210233501562605 0.08417978665852194 0.21335156239986014 5.190452633005871 0.028354314373356646 0.028954121468626765 586.6292731511925 -2.768363730739365 0.17816575638780574 LLEQWEKDDDIEEGDLPEHK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLEQWEKDDDIEEGDLPEHK 20 1 Q14696 Q14696 MESDC2 LDLR chaperone MESD 0 ;; 194.18 2.7947e-18 593448000.0 1016544.0 781536.0 642623.0 603328.0 650326.0 988902.0 968684.0 906783.0 1425519.0 853855.0 False True 1011071.0400526567 807548.953311512 733098.7326207523 679709.262939387 733141.1613158052 920541.5323649134 921825.0541877635 974451.7520107747 1074218.943425959 799361.2428779564 1.264848713971267 1.0102428163818367 0.9171056755033083 0.850315510034257 0.9171587537522613 1.1515964034616804 1.153202087793121 1.2190380265403367 1.3438466688207535 1.0 19.608488099655435 2.605975074512926 4.569775342062899 1.193306911840901 0.9815656063010775 0.3243461293770308 0.13012214175196737 0.25590854937932117 8.391160228371026 0.04428788013374309 0.04141661628909416 403.6222271901608 -2.605975074512926 -0.2117413055398235 LLEQYKEESK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEQYKEESK 10 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ; 134.2 0.0001615 1314390000.0 1573340.0 1324910.0 1194760.0 1085260.0 1018760.0 1575820.0 1541190.0 1290730.0 2361140.0 1492780.0 False True 1564869.3122545057 1369008.8284249934 1362971.822959914 1222653.8047257864 1148493.0473363977 1466887.2724812743 1466636.751782459 1387050.8267941377 1779268.6846550398 1397509.5023667417 1.1197557580856037 0.9796060964927386 0.9752862650677248 0.8748804946622333 0.8218141239049723 1.049643862883965 1.0494646006332318 0.9925162043228388 1.2731710815860449 1.0 20.41442666203183 1.8367735016577127 1.4095177293128764 1.11004092192183 0.9599577784041948 0.22733776528739635 0.10419521489309658 0.6078644623386563 2.2683458569643116 0.08005047970114669 0.03339669337697005 68.67102054616613 -1.8367735016577127 -0.15008314351763508 LLEQYKEESKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLEQYKEESKK 11 2 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 89.301 0.0069378 5077600000.0 1675000.0 1745800.0 1187600.0 1396300.0 1374400.0 1932600.0 2162400.0 1769200.0 3176200.0 1830700.0 False True 1665981.986109993 1803907.897641613 1354803.7571957505 1573071.4368341342 1549421.693292971 1799003.91085106 2057796.45082981 1901226.6878155682 2393468.0688994895 1713863.158658875 0.9720624296595828 1.0525390481310068 0.7904970419318109 0.9178512466917648 0.904052161612143 1.0496776838699358 1.2006772188510477 1.109322338956926 1.3965339396013485 1.0 20.70882049312382 2.47254875920682 2.9412365726139966 1.1786130768613754 0.9265972920132307 0.5282772038779338 0.11071560846173377 0.20245347042081857 3.5923786047645905 0.03959090350621338 0.03383128120171391 296.85800138310117 -2.47254875920682 -0.2520157848481447 LLESIQQHS(ph)LDAVLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLESIQQHSLDAVLAR 16 0 P38935 P38935 IGHMBP2 DNA-binding protein SMUBP-2 1 LLESIQQHS(1)LDAVLAR;LLESIQQHS(1)LDAVLAR;LLESIQQHS(1)LDAVLAR;LLESIQQHS(1)LDAVLAR 198.35 2.6366999999999995e-11 169871000.0 151478.0 189923.0 169475.0 202676.0 153174.0 154162.0 182482.0 165339.0 165409.0 184545.0 True False 150662.45927878807 196244.47224412192 193335.6068968928 228334.76081916166 172679.80096657254 143505.14379831363 173654.64851106427 177677.43575443036 124646.16831704424 172767.18010307677 0.8720548612815204 1.1358897686877685 1.1190528593540998 1.3216327353547823 0.9994942376413617 0.8306273431834406 1.005136788176192 1.028421229358632 0.7214690211571292 1.0 17.398469654903415 3.0104481793433977 24.939107564992266 0.9332921312455957 1.1201225370273988 0.3198384110573951 0.13283971923030774 257.6494062221058 614986.8528741646 0.03836721464815913 0.045813911845676535 1024.349546122872 -3.0104481793433977 0.1868304057818031 LLESLQENHFQEDEQFLGAVMPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLESLQENHFQEDEQFLGAVMPR 23 0 P49903;P49903-2;P49903-4;Q5T5U6 P49903 SEPHS1 Selenide, water dikinase 1 0 174.71 2.3723e-12 27964000.0 4843.5 8631.2 5843.5 5238.7 4753.1 8545.4 6420.0 3379.4 6932.2 8379.8 False True 4817.423134163437 8918.484274329423 6666.214007387484 5901.91888286399 5358.379111169104 7954.676611707874 6109.440073218355 3631.5879882454915 5223.852196720934 7844.993989692271 0.6140760771127635 1.1368376172177617 0.8497411235937702 0.7523165588933103 0.6830316400764117 1.0139812244801867 0.7787692484208015 0.4629178802453034 0.6658835180224079 1.0 12.937556626559797 1.9882420889774257 24.69047773152421 0.6426543778261437 0.84852625835136 0.05590415508252444 0.19043440314212695 758.7443135330933 1593289.432733467 0.07213201988288226 0.04946948754193041 97.32896138780285 -1.9882420889774257 0.20587188052521632 LLETTDRPDGHQNNLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LLETTDRPDGHQNNLR 16 1 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ;;;;; 227.89 2.7734e-15 9496380000.0 4380580.0 5102350.0 4812270.0 4906190.0 4889210.0 4890930.0 5209000.0 4501380.0 5935180.0 5250240.0 False True 4356995.444008194 5272178.635314296 5489795.786999323 5527313.150957001 5511821.912881923 4552831.521110814 4957020.7696876 4837295.833144495 4472534.416337403 4915165.188243388 0.8864392705314801 1.0726350861868998 1.11690972261327 1.1245427039111144 1.1213909811344045 0.9262825046044755 1.0085156001560898 0.9841573269429176 0.9099459011134119 1.0 22.22880847261533 2.7362936024507127 24.963066921693272 0.9699928174434079 1.0711022671452868 0.3256284729988742 0.07048916814001198 248.40535149206102 2735278.919272078 0.022876257011882964 0.02250462143267204 544.8708853916627 -2.7362936024507127 0.10110944970187885 LLEVEHPAAK ddPTM_BT-474_Trastuzumab_2h_R1 5 LLEVEHPAAK 10 0 P17987;E7ERF2;F5H136;F5GZI8;F5H676;F5H726 P17987 TCP1 T-complex protein 1 subunit alpha 0 ;;;; 135.86 0.00013302 5189450000.0 7351680.0 7740320.0 6821390.0 6792390.0 6655330.0 8188680.0 8334290.0 7787920.0 10347990.0 8734310.0 False True 7312099.371728432 7997951.872077758 7781782.419415227 7652305.877560559 7502846.826268551 7622615.825679308 7931128.552620404 8369094.136656458 7797866.520461941 8176878.857980992 0.8942408831936532 0.9781179360718311 0.9516812655014287 0.9358467956378702 0.9175685437659926 0.9322158195164284 0.9699457079371153 1.0235071696687612 0.9536482875554506 1.0 22.96311883603875 2.052656348807979 4.484975611250525 0.9955416129153746 0.9372541404674802 0.4998241501488687 0.025949742948328934 0.1608793232893007 6.852463195504448 0.010243062795740832 0.007135983474167533 112.8902276464574 -2.052656348807979 -0.05828747244789434 LLEVQGSRPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEVQGSRPGK 11 1 P62136;E9PMD7 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase 0 ; 134.08 0.00013534 6075200000.0 4793800.0 6368200.0 5041400.0 5591600.0 6335100.0 7792700.0 7179100.0 7425000.0 9546800.0 7894400.0 False True 4767990.713441244 6580161.687341813 5751185.299365659 6299495.986680341 7141837.433920463 7254008.991042665 6831819.506174741 7979091.203386045 7194119.060565971 7390572.633264115 0.6451449637313715 0.8903453106901709 0.7781785775949536 0.8523691328500089 0.9663442588705341 0.981521913253813 0.924396504193127 1.0796309838662672 0.9734183557287659 1.0 22.81725472032137 5.459613688685862 0.34695047968204007 1.0338648342053038 0.22220803642791775 0.751677867582068 0.059092160077694474 5.085478899701583 0.3345644493108553 0.0528992211786197 1.905740598774137 288146.72554236924 -5.459613688685862 -0.8116567977773861 LLEVSDDPQVLAVAAHDVGEYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLEVSDDPQVLAVAAHDVGEYVR 23 0 G3V126;Q9UI12-2;Q9UI12 G3V126 ATP6V1H V-type proton ATPase subunit H 0 ; 270.0 3.1544e-45 719450000.0 532030.0 678880.0 606380.0 609970.0 637960.0 676310.0 651270.0 604780.0 721100.0 684870.0 False True 529165.6095940894 701476.1104083733 691753.0332505552 687192.1394583669 719200.4245148295 629558.2815624959 619765.5820069965 649911.7546106145 543394.5672449537 641161.0102532927 0.8253240623366054 1.0940716905590577 1.0789068926341543 1.0717934005171172 1.1217157827964415 0.9819035647750739 0.9666301788409687 1.0136482790085204 0.8475165497513393 1.0 19.290327170633407 2.5026848240208146 23.267884566859234 0.965584632346362 1.0461913571057992 0.1602754071067688 0.08714372915315402 563.7684315095693 513139.94334519544 0.02771822174508432 0.02601458956633614 318.18875257625956 -2.5026848240208146 0.0806067247594372 LLFAIEETEGFGQE ddPTM_BT-474_Trastuzumab_2h_R1 4 LLFAIEETEGFGQE 14 0 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UJW8;Q9H0M0-3;Q9H0M0;Q9H0M0-6 A0A590UJQ1;Q9H0M0-3 ITCH;WWP1 E3 ubiquitin-protein ligase Itchy homolog;NEDD4-like E3 ubiquitin-protein ligase WWP1 0 ;;; 212.89 4.1902e-09 49020000.0 102824.0 135030.0 118377.0 127859.0 126673.0 132830.0 120766.0 107941.0 138069.0 137820.0 False True 102270.40700882043 139524.39192264134 135043.45264867082 144045.9362903215 142804.0557003059 123647.7747481868 114924.08720907892 115996.105533292 104043.7449798134 129024.20960636168 0.7926450959927281 1.0813814891663707 1.046652043524802 1.116425643914343 1.1068004689661342 0.9583300306618597 0.8907172348484006 0.8990258951183118 0.8063893225716254 1.0 16.977282267232965 2.471176226862857 4.186133313424835 0.8930393086914716 1.0377963077242485 0.2851548460168575 0.09603551291025407 0.24359535946050934 10.16476753580317 0.033226272216647104 0.028804145216509983 295.92130045628915 -2.471176226862857 0.14475699903277683 LLFEVFDENR ddPTM_BT-474_Trastuzumab_2h_R1 5 LLFEVFDENR 10 0 Q96PU5-7;Q96PU5;Q96PU5-2;Q96PU5-3;H0Y8H4;Q96PU5-5;Q96PU5-6;P46934-4 Q96PU5-7;Q96PU5-5;P46934-4 NEDD4L;NEDD4 E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4 0 ;;;; 200.05 6.2191e-07 317561000.0 326101.0 356841.0 363018.0 341897.0 336003.0 392655.0 387151.0 320623.0 487739.0 327774.0 False True 324345.30844922736 368718.2369700602 414127.77899097925 385181.1251445112 378790.99040418904 365511.6840604483 368423.02706955775 344549.516350605 367542.25881775946 306855.18269856065 1.056997980600667 1.2016034199828745 1.3495870441197595 1.2552537707107725 1.2344291762420534 1.1911536929115807 1.2006413704000507 1.1228407919349805 1.1977710644659856 1.0 18.227198424835386 0.5616278658840843 0.5560653608326611 0.9948509325238217 1.2249701187982531 0.41833609827544316 0.07215369207464552 1.5941684337329667 0.9173148685984861 0.10067965529269711 0.03444266471453747 3.644415339082959 -0.5616278658840843 0.2301191862744314 LLFGHSTEGDILELVDGHFDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLFGHSTEGDILELVDGHFDTK 22 0 Q9UHY7;A0A0C4DGY8;D6RA00;Q9UHY7-2 Q9UHY7 ENOPH1 Enolase-phosphatase E1 0 ;;; 364.23 4.182199999999998e-113 2001462000.0 1260345.0 1265937.0 1169176.0 1142739.0 1129631.0 1476665.0 1308602.0 1137201.0 1635702.0 1386589.0 False True 1253559.4425574944 1308072.947769922 1333785.8181400292 1287409.6402323323 1273482.8120024942 1374586.6242455125 1245299.9219149041 1222064.713209671 1232605.1593838648 1298095.7029014332 0.9656910809854822 1.0076860626271147 1.0274942095246316 0.9917678930411555 0.9810392324356936 1.05892548690602 0.9593282830622405 0.9414288256853313 0.9495487556339741 1.0 20.307965320158544 2.0429369678743323 24.999945651358562 0.9554580020921979 1.0051689221024176 0.34731446089371865 0.028161283208533165 126.65594096674788 73744.61974455405 0.010137952612093444 0.007487368697956674 110.39183890558415 -2.0429369678743323 0.049710920010219706 LLGGLDHIVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLGGLDHIVDK 11 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3;Q8WVX6;F6QZY1 Q7Z5K2 WAPAL Wings apart-like protein homolog 0 103.34 0.0027472 248870000.0 415240.0 402270.0 359750.0 376370.0 355090.0 441250.0 407820.0 370260.0 540340.0 453810.0 False True 413004.3939775008 415659.31377265014 410399.6729969447 424018.40340991435 400308.6067166766 410747.4260907741 388092.1885763097 397890.681342184 407180.4471850484 424847.45727371244 0.9721239633344878 0.9783730763977652 0.9659930075385632 0.9980485846164215 0.9422407969333181 0.9668115439046768 0.913485962860023 0.9365495180210971 0.9584156388694546 1.0 18.696585404772154 3.2190342238225687 24.995079643844786 0.9468602057353711 0.9777130016968466 0.20842753237697076 0.02275847010288968 288.670196252693 369516.49533356517 0.006360590117031489 0.007612777233214419 1655.9004486878023 -3.2190342238225687 0.0308527959614755 LLGGQLGLEDFIFAHVK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLGGQLGLEDFIFAHVK 17 0 Q8TF65 Q8TF65 GIPC2 PDZ domain-containing protein GIPC2 0 ;; 183.23 7.0302e-10 369151000.0 689777.0 796731.0 798935.0 731055.0 699677.0 786094.0 824301.0 736121.0 1059982.0 852320.0 False True 686063.3172734295 823249.7097009408 911418.1035324922 823606.4880432424 788776.7186395124 731753.1720462345 784426.4114943857 791054.0869666975 798763.6391311053 797924.2078921355 0.859810130445588 1.0317392323209584 1.1422364361399335 1.0321863654430932 0.9885358920532217 0.9170710260555899 0.9830838615193707 0.9913900081517933 1.001052018764022 1.0 19.605892190695034 3.1563999646707455 5.370165816502909 0.977196522694485 1.0264327999800644 0.05719530708667453 0.06798116780546688 0.5146019291281061 24.999880695262338 0.02052568022724723 0.0248857641433131 1433.507484114271 -3.1563999646707455 0.049236277285579444 LLGHEVEDVIIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLGHEVEDVIIK 12 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 ; 156.51 7.324e-05 230790000.0 320460.0 387190.0 357240.0 298830.0 301710.0 316880.0 353350.0 326560.0 552780.0 371930.0 False True 318734.6789664529 400077.38508870214 407536.2868142561 336661.84736027 340130.98012472485 294974.83145528444 336257.11057191645 350929.5654380799 416554.7758725082 348193.108974707 0.9153962865750052 1.1490100601553377 1.1704317986484327 0.966882567985357 0.9768458115850656 0.8471587284535019 0.9657201762609908 1.0078590195866617 1.19633262444251 1.0 18.40952812559816 3.7107540686980407 24.699127320069927 0.9874857294038567 1.085352477530468 0.11972711363279032 0.10250253737667751 1128.6603513067796 1002531.2884336784 0.027803727178944825 0.04308503225074991 5137.526425038726 -3.7107540686980407 0.09786674812661122 LLGHLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLGHLVK 7 0 P14868;P14868-2;H7BZ35 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 106.84 0.007612399999999998 254450000.0 638670.0 743970.0 814240.0 633610.0 502170.0 674150.0 770770.0 597060.0 1249100.0 781570.0 False True 635231.4716829079 768732.5917106371 928877.9144990464 713824.9610345026 566118.3729052177 627547.5972784021 733484.9104726646 641615.6490092484 941276.0420824735 731689.5334642584 0.8681707782197458 1.0506267433825307 1.2694973373490523 0.9755844909449857 0.7737139141855327 0.8576692279677888 1.0024537415478745 0.8768960326266441 1.2864418568705043 1.0 19.480872096245175 4.756538643695937 22.313993168904922 0.9956186917429166 0.8681702961655965 0.062060843251038 0.15666769208048897 2872.2804783133197 3564760.4971240996 0.03862561247694477 1.02152555244931 57087.18703183363 -4.756538643695937 -0.12744839557732013 LLGHWEEAAHDLALACK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLGHWEEAAHDLALACK 17 0 P50502;Q8IZP2;H7C3I1 P50502 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 0 ;;; 189.86 1.9149e-10 3302450000.0 3835733.0 4080361.0 3731612.0 3542462.0 3115081.0 3959412.0 3966357.0 2949945.0 5689562.0 3790899.0 False True 3815081.8397180033 4216173.349254686 4256990.533847045 3990937.325983191 3511768.1008183626 3685707.1678933115 3774489.1589548476 3170084.8754171855 4287445.68132483 3548960.580268078 1.0749856904383601 1.1880023048709685 1.1995034708234162 1.1245369554602738 0.98952017679303 1.0385314473160205 1.0635477835230658 0.8932431915537722 1.2080848981988324 1.0 21.758965119218214 3.3577526462839855 4.895922691218324 1.0205745164500253 1.1580981247407018 0.32513037243456144 0.08039622787559135 0.21423209411320565 8.267921240298852 0.022048204197626153 0.03009400177743814 2279.043666170288 -3.3577526462839855 0.13752360829067656 LLGIFENQDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LLGIFENQDR 10 0 Q9NZJ9;F8VRL4;F8VRR0;A0A0C4DGJ4 Q9NZJ9 NUDT4 Diphosphoinositol polyphosphate phosphohydrolase 2 0 ;;;; 176.38 5.8468e-06 578997000.0 317133.0 377440.0 327333.0 353543.0 303717.0 326273.0 333245.0 302421.0 382905.0 335122.0 False True 315425.59116478905 390002.8622327016 373418.64117056003 398301.5075504192 342393.55967830337 303718.5154740284 317124.66623047495 324989.1906827217 288543.19341412943 313734.2270476211 1.0053910729890214 1.2430995046437947 1.190238772111656 1.2695506999622383 1.0913490788059033 0.968075808406864 1.0108067239419791 1.0358741975366055 0.9197058163830242 1.0 18.25918340399525 2.982883764682281 4.828450418520204 0.9968184320436851 1.1833634121161982 0.6081471925757232 0.07172896947136104 0.12688580260144558 7.988632842705799 0.021202733576939924 0.023833855907877375 961.3549452673298 -2.982883764682281 0.18654498007251308 LLGLELALSS(ph)DAESAAGGPAGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLGLELALSSDAESAAGGPAGVR 23 0 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 LLGLELALS(0.428)S(0.571)DAES(0.002)AAGGPAGVR 78.021 0.014757 7884500.0 18335.0 24751.0 21789.0 18997.0 22210.0 26388.0 22661.0 21093.0 24438.0 23842.0 True False 18236.286397210006 25574.82207270456 24856.7018066169 21402.018252193695 25038.31185101633 24563.859670670463 21564.80085657337 22667.066768083732 18415.582352422927 22320.38314783685 0.8170238958903066 1.1458056926403215 1.1136323978840774 0.9588553256653143 1.1217689089464795 1.1005124557214887 0.9661483279091154 1.0155321536351172 0.8250567309014877 1.0 14.44607417198267 1.5891004924715633 2.1534170614451096 0.9189491841681331 1.0457560212323236 0.1509875807034634 0.10336888847340399 0.45961441677795883 4.577490180177352 0.07502106808540301 0.027264334953454195 38.824019145346085 -1.5891004924715633 0.1268068370641905 LLGLNELDDLLGKES(ph)PSKDSEPSCWGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLGLNELDDLLGKESPSKDSEPSCWGK 27 2 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 LLGLNELDDLLGKES(0.834)PS(0.166)KDSEPSCWGK;LLGLNELDDLLGKES(0.5)PS(0.5)KDS(0.001)EPSCWGK 145.16 8.5068e-08 619010000.0 709870.0 473800.0 430500.0 399410.0 443710.0 711150.0 663380.0 589390.0 1157100.0 564570.0 True False 706048.1387939722 489570.14658185176 491110.6580269204 449975.2650475702 500213.8384247841 661989.8743670342 631289.7750423036 633373.274661777 871948.2093456319 528538.6592473054 1.3358495664242593 0.9262712159580742 0.929185877767794 0.851357336260667 0.9464091787290284 1.2524909252802385 1.1944060552568219 1.1983480556819952 1.6497340243519327 1.0 19.011649473886933 2.73271484481379 22.957477145818416 1.2595787363151225 0.9818907655506275 0.3098046973459616 0.19419198779586594 182.18124205603158 715457.183926566 0.060722480214398925 0.05878626881584448 540.3993833962382 -2.73271484481379 -0.27768797076449503 LLGLTPPEGGAGDRS(ph)EEEASSTEKPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLGLTPPEGGAGDRSEEEASSTEKPTK 27 2 V9GYY5;Q9UGY1 V9GYY5 NOL12 Nucleolar protein 12 1 LLGLT(0.002)PPEGGAGDRS(0.997)EEEASSTEKPTK 95.878 0.0024574 256750000.0 166890.0 126060.0 122770.0 120420.0 110550.0 156370.0 144470.0 138460.0 202200.0 171720.0 True False 165991.482783222 130255.8308951209 140054.94886403027 135665.15965305915 124627.88721881394 145560.50995538643 137481.4341710055 148792.58828563362 152370.51934118642 160760.6825831115 1.0325378078524032 0.8102468140975955 0.8712015065725004 0.8438951457109032 0.7752386044665037 0.905448444336713 0.8551931477395234 0.9255533498292375 0.9478096067576257 1.0 17.29455508258171 1.3103349128553612 1.328256687868187 0.9960561646662853 0.8634713902555048 0.29937277375425797 0.06485394427891195 0.4533600302134147 1.5350497595426067 0.05685494510039464 0.01810249055938533 20.43313069485356 -1.3103349128553612 -0.13258477441078054 LLGPAPEDDGGHNDHSQPQASQDQDSHTLS(ph)PQV ddPTM_BT-474_Trastuzumab_2h_R1 1 LLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 33 0 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 LLGPAPEDDGGHNDHSQPQASQDQDS(0.002)HT(0.095)LS(0.903)PQV 211.52 1.8638e-27 511130000.0 527370.0 553030.0 516360.0 558250.0 582320.0 607120.0 586840.0 210520.0 612840.0 478780.0 True False 524530.6985163157 571437.2692363057 589058.9997184218 628924.3927613377 656475.0003189486 565151.2234067543 558452.3072534986 226230.07139889945 461813.7936352754 448223.8504958197 1.1702427212119262 1.2748925979824342 1.3142071736406085 1.4031479852435993 1.4646141645357873 1.2608682531766013 1.245922783082037 0.5047256435565545 1.0303195448533644 1.0 18.773859892755343 1.8850724027120282 7.204033572899376 0.8031277890340773 1.3176589918350057 0.6525970450298234 0.15345918716064036 0.13576043253581854 7.645614713509856 0.06421009011242655 0.03975500431433745 76.74894294732594 -1.8850724027120282 0.5145312028009283 LLGSENDTGS(ph)PDFYTPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLGSENDTGSPDFYTPR 17 0 Q9P2Q2 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 1 LLGSENDT(0.175)GS(0.825)PDFYTPR;LLGSENDT(0.187)GS(0.813)PDFYTPR;LLGS(0.001)ENDT(0.388)GS(0.611)PDFYTPR;LLGSENDT(0.145)GS(0.855)PDFYTPR 258.89 3.6791e-27 419421000.0 292323.0 371199.0 323554.0 335965.0 356167.0 398560.0 368883.0 324233.0 397593.0 391212.0 True False 290749.16544813884 383554.13432046643 369107.5908182168 378498.1345527328 401522.756282798 371008.4853093228 351038.7200200939 348428.91288181394 299611.5326232464 366244.5152265559 0.7938662651870262 1.0472624663968086 1.0078173883092552 1.033457482137574 1.0963242849778085 1.0130076216426611 0.9584818486713561 0.9513559886795264 0.8180642171198363 1.0 18.482447628743852 -0.5329026565653121 7.307571706919598 1.0000000000317841 0.9770248521530303 0.0032085506069102765 0.09187575514614753 0.0 0.0 0.08773409448831941 0.02067912438465066 0.29315502538093197 0.5329026565653121 -0.022975147878753877 LLGTQHGEGNSALSPLNPGELLIALHNIDSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLGTQHGEGNSALSPLNPGELLIALHNIDSVK 32 0 Q92797;A0A087WUE9 Q92797 SYMPK Symplekin 0 ; 176.98 1.2379e-19 268870000.0 117559.0 135795.0 139728.0 126699.0 127022.0 155965.0 157302.0 136770.0 184779.0 152036.0 False True 116926.07540603275 140314.85448518908 159400.48786245185 142739.08040925904 143197.49878162073 145183.50665211902 149692.70130800526 146976.47190398755 139242.69136174643 142332.9323154319 0.8214969895154438 0.9858214272873234 1.1199129060953763 1.0028535075278786 1.0060742545813137 1.0200275107827455 1.0517081245559035 1.0326244918376644 0.9782886440726379 1.0 17.118909978825922 4.699064225547526 3.7848397776943097 1.0285352431569192 0.8079605567774134 0.7298942451009913 0.03713838836216704 0.1067809684971123 2.8633691389715312 0.00868467058174195 0.0606993566308674 50010.848794646285 -4.699064225547526 -0.22057468637950584 LLGWDDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LLGWDDR 7 0 Q8WUY1 Q8WUY1 THEM6 Protein THEM6 0 ;;;; 162.51 0.0029527 958100000.0 1730750.0 2655560.0 2734740.0 2183530.0 2805420.0 2963640.0 2348040.0 2008760.0 2558820.0 2361670.0 False True 1721431.8343044028 2743948.7092800788 3119767.6212138017 2459964.6741176243 3162673.607972907 2758770.5424581557 2234456.3348161383 2158663.8714765976 1928233.0974313312 2210946.1986725903 0.7785950808472488 1.241074392008043 1.4110554219215512 1.1126298213835053 1.4304615869312947 1.2477782336424417 1.010633517974188 0.9763529627146142 0.8721302664845509 1.0 21.076232488258217 2.150178255927676 4.334001420903454 0.9576907610517427 1.2209054758803972 0.31451619972266964 0.17282123884095585 0.25503803390130547 8.77731092709113 0.06760865765666929 0.049059533206465965 141.31174388699662 -2.150178255927676 0.26321471482865455 LLHDLQIGEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLHDLQIGEK 10 0 P49756;P49756-2;P49756-3;E9PQU5 P49756 RBM25 RNA-binding protein 25 0 ;;; 168.22 5.0036e-06 1737740000.0 5024440.0 5135460.0 4824700.0 4506040.0 4452590.0 5299720.0 5205860.0 4856050.0 7294210.0 5518980.0 False True 4997388.973307761 5306390.681648874 5503975.822955828 5076504.201985311 5019600.943931422 4933362.830598966 4954032.663483571 5218433.10952226 5496649.682906417 5166753.971363503 0.967220231697805 1.0270260033783882 1.0652676425975307 0.9825325978596239 0.9715192501428035 0.9548282844396896 0.9588288296561188 1.010002244822414 1.0638497039672 1.0 22.300826756987767 1.468714018607755 8.221315088998915 1.0336858706286627 0.991293655712065 0.18999404368928763 0.03496522666581433 0.2022664392321572 44.19750356129036 0.02116033448772736 0.009502089655721795 29.42483380722353 -1.468714018607755 -0.042392214916597726 LLHDQIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLHDQIEK 8 0 P12270 P12270 TPR Nucleoprotein TPR 0 ;;; 133.13 0.00093243 950660000.0 1984020.0 2031520.0 1782360.0 1734370.0 1759670.0 2118090.0 2048330.0 1937850.0 2671340.0 2167600.0 False True 1973338.2567653463 2099137.915120228 2033300.7954491558 1953941.0641710374 1983753.5441187732 1971671.4237475488 1949244.452519526 2082462.207202915 2013024.051122082 2029261.9122242737 0.972441381212527 1.0344341962341193 1.001990321308724 0.9628826384610565 0.9775739307817497 0.9716199825513899 0.9605681951537539 1.026216573946499 0.9919981442492096 1.0 20.952523651807276 1.730954497822051 24.999999996318166 1.0074281068338726 0.9843471850424842 0.18428176930021223 0.022004614286957307 1.2742838479535599 4163.059155826157 0.010798783476839161 0.005988502684319101 53.82133895262209 -1.730954497822051 -0.02308092179138843 LLHEDLDES(ph)DDDMDEK ddPTM_BT-474_Trastuzumab_2h_R1 8 LLHEDLDESDDDMDEK 16 0 O43150;O43150-2 O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 1 LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK 389.89 1.288499999999999e-121 5174830000.0 5185110.0 4274650.0 3979720.0 3501780.0 3566400.0 5175680.0 5337290.0 4518770.0 7135250.0 5219320.0 True False 5157193.9438798735 4416929.141169508 4540029.983653646 3945104.9889544104 4020559.900291068 4817897.423840215 5079104.892272214 4855983.563249126 5376863.244951539 4886218.52911534 1.0554570805930765 0.9039565289293768 0.9291500076390624 0.8073942999984244 0.8228366939247391 0.9860175911355537 1.0394755907881585 0.9938121953232232 1.100413993543803 1.0 22.22028695683865 2.5239740839697826 6.452423183426244 1.0272698342081077 0.8998001286529437 0.4450928462707472 0.06852107272944734 0.21220955135185463 22.373163957395374 0.023311008825055376 0.02160563659781573 334.1750979114803 -2.5239740839697826 -0.12746970555516401 LLHEVQELTTEVEK ddPTM_BT-474_Trastuzumab_2h_R1 6 LLHEVQELTTEVEK 14 0 Q13561;Q13561-3;Q13561-2;F8W1I6;F8VW18;F8VX93;F8VRV7;H0YHL1 Q13561 DCTN2 Dynactin subunit 2 0 ;;;;; 191.06 5.3206e-07 826997000.0 1007724.0 919106.0 860206.0 828917.0 805448.0 1063507.0 1080447.0 977889.0 1377495.0 1117528.0 False True 1002298.525952663 949697.8875986907 981315.5277554123 933857.807209225 908017.0285356778 989989.2643161946 1028181.6509016436 1050864.0427997261 1038029.8147373283 1046206.4062761436 0.958031340603461 0.9077538446538821 0.9379750705678593 0.8926133520183546 0.8679138486330478 0.9462657257471326 0.9827713200125995 1.0044519288886415 0.9921845331000037 1.0 19.9967360785901 2.32614447983309 2.9888976450875613 0.9973749408826631 0.9124984268593039 0.7313735713791412 0.023379257044317935 0.13206333421423283 2.3929283856339256 0.009325778008506877 0.007281479232793899 211.90659827455377 -2.32614447983309 -0.08487651402335916 LLHHDDPEVLADTCWAISYLTDGPNER ddPTM_BT-474_Trastuzumab_2h_R1 2 LLHHDDPEVLADTCWAISYLTDGPNER 27 0 P52292 P52292 KPNA2 Importin subunit alpha-1 0 ; 260.56 2.7864999999999997e-53 413680000.0 88989.0 110228.0 101326.0 109198.0 106604.0 114232.0 109387.0 66765.0 123018.0 110170.0 False True 88509.89311160729 113896.87234576681 115591.82005861957 123022.45560367694 120179.38750858822 106335.41071320389 104095.53291108031 71747.34332580057 92701.86225674627 103138.85627871752 0.858162445319564 1.104306140820268 1.1207397893403992 1.1927847568061734 1.1652193154422925 1.030992727181773 1.0092756180054734 0.6956383453769739 0.8988063820121602 1.0 16.654228426927077 1.9497765117977552 5.825494735936189 0.8338916452453905 1.0859634562569564 0.4130638283824487 0.11191229855571562 0.1723639000175258 13.621207444779497 0.04890703755653224 0.03024963187805051 89.07924178511287 -1.9497765117977552 0.25207181101156595 LLHIEELR ddPTM_BT-474_Trastuzumab_2h_R1 8 LLHIEELR 8 0 Q9Y224 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 ;;;;;;; 221.7 5.3704e-06 5893830000.0 4052174.0 5391152.0 4437665.0 5010401.0 4655275.0 4517017.0 4579509.0 3953245.0 5343560.0 4586535.0 False True 4030357.5454228595 5570593.2352998005 5062449.659124359 5644717.252872012 5248096.677273308 4204766.246704294 4357980.654246749 4248256.21607136 4026711.23803556 4293818.409569828 0.9386418243585287 1.2973518448950627 1.1790087926963673 1.3146148053889224 1.2222446728479799 0.9792603798364973 1.0149429339009588 0.9893888867314646 0.9377926251052084 1.0 22.03382974860826 2.7365770710439534 24.866241503459346 0.9866689416794819 1.2025867416297755 0.5244933347273002 0.09775904236465426 123.275361724644 1545405.1878321273 0.029781844733267938 0.02939629844116301 545.2266444620496 -2.7365770710439534 0.2159177999502936 LLHLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLHLAK 6 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 74.949 0.078979 201700000.0 494000.0 521540.0 474380.0 447600.0 451950.0 570290.0 522090.0 494570.0 717000.0 582470.0 False True 491340.35888855974 538899.143622412 541168.5806151232 504266.114106538 509503.15358247765 530867.1946182601 496834.51212251844 531477.3247755739 540304.9573077679 545296.265922344 0.9010521244950754 0.9882685382246078 0.9924303803910355 0.9247562208290472 0.9343602467562767 0.9735390241859115 0.9111276624683011 0.9746579208214529 0.9908466114174952 1.0 19.056680750646315 1.49977194693998 6.089986120179158 0.9918079471929409 0.9491713502187888 0.31156917035980114 0.029399825735453296 0.17942519639000173 15.276880982667436 0.016723761932095665 0.007422767170520434 31.606175474715346 -1.49977194693998 -0.04263659697415201 LLHMDS(ph)DDEIPIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLHMDSDDEIPIR 13 0 Q1MSJ5-1;Q1MSJ5;Q1MSJ5-2 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 1 LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR 235.71 6.936e-17 363793000.0 342915.0 384716.0 327567.0 342902.0 314868.0 403305.0 381188.0 311807.0 443377.0 397436.0 True False 341068.783741438 397521.03949426685 373685.58633659506 386313.35804146575 354964.5734311483 375425.47462785145 362748.4801604295 335075.6216638638 334112.67929741467 372071.2942179218 0.9166758872337901 1.0684001847813585 1.004338663432949 1.038277781825336 0.9540230029765369 1.0090148862921016 0.9749434739998192 0.9005683235203046 0.8979802647761512 1.0 18.505219563403674 1.938878742865477 4.574034072586318 0.9238565484641874 1.001224561167109 0.2703337758224884 0.04730172781175663 0.23180892388849966 9.48442897207796 0.020401044461767104 0.012157393858069583 86.8717845169194 -1.938878742865477 0.07736801270292148 LLHPS(ph)PDLVSQEATLSEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLHPSPDLVSQEATLSEAR 19 0 A0A087WU05;A0A087WY48;Q8IY22-3;Q8IY22-2;Q8IY22 A0A087WU05 CMIP C-Maf-inducing protein 1 LLHPS(1)PDLVSQEATLSEAR;LLHPS(1)PDLVSQEATLSEAR;LLHPS(1)PDLVSQEATLSEAR 240.2 1.6669e-24 371846000.0 313053.0 364345.0 343071.0 355837.0 376600.0 403736.0 387925.0 311875.0 390303.0 373359.0 True False 311367.55743145815 376472.00307379616 391372.41477341135 400885.9277152104 424557.7777169179 375826.6806123168 369159.5857325902 335148.69616916124 294118.0554422509 349530.9089712787 0.8908155171394113 1.0770778589561911 1.1197075987507898 1.1469255434235477 1.2146501691837623 1.0752316060357308 1.0561571988556937 0.9588528154936384 0.8414650833252029 1.0 18.415060513007145 1.7372774581971362 2.5221596889784075 0.9154893030803755 1.0952447870103132 0.3954374124232657 0.08552424477661012 0.2491231683194188 3.3032762877249353 0.05515491287871709 0.02449899348114491 54.61066414220186 -1.7372774581971362 0.1797554839299378 LLHSPHQNVCEQAVWALGNIIGDGPQCR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLHSPHQNVCEQAVWALGNIIGDGPQCR 28 0 O00629 O00629 KPNA4 Importin subunit alpha-3 0 134.03 8.4235e-06 557570000.0 129490.0 144110.0 168960.0 189030.0 126940.0 158670.0 164530.0 122490.0 174150.0 176120.0 False True 128792.84022769153 148906.61423366526 192748.0993733531 212961.17861831727 143105.05656767281 147701.51636900404 156571.0553343637 131630.82579161684 131233.0659904433 164879.87081608194 0.7811313751655937 0.9031218516647534 1.1690214118881572 1.291614176820095 0.8679352783294074 0.8958129069239762 0.949606853519515 0.7983438192916023 0.79593139745257 1.0 17.33105575407078 LLHTLEGHAMPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLHTLEGHAMPIR 13 0 H3BQA8;H0YL19;H0YN81;Q9GZS3;H0YLA1 H3BQA8 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed 0 148.18 2.4949e-05 143450000.0 44726.0 57845.0 54827.0 60626.0 50804.0 52558.0 50264.0 32579.0 82906.0 51523.0 False True 44485.200185525755 59770.335856959086 62546.16503517299 68301.24538387616 57273.588261100114 48924.7891682241 47832.538292873425 35010.210412809945 62474.92718348366 48234.758028940436 0.9222644002657797 1.2391548812393214 1.2967031989182123 1.416017166353276 1.1873924655481107 1.0143056826131407 0.9916612054770612 0.7258295022814072 1.2952263002127895 1.0 15.557785508666122 2.7017309473061335 3.135568156053131 0.9585094130925993 1.2331782175919745 0.24375092178057356 0.17469827281205402 0.2996364166027342 5.982825616394282 0.06011879873767225 0.05859403861979689 503.1887783432205 -2.7017309473061335 0.27466880449937525 LLHVAVSDVNDDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLHVAVSDVNDDVR 14 0 A0A087WW66;Q99460-2;Q99460;H7C378 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 99.481 0.002164 1315600000.0 75142.0 57597.0 56763.0 59048.0 66711.0 90111.0 65074.0 73970.0 126410.0 80374.0 False True 74737.44382106104 59514.08132687825 64754.737007159354 66523.47074567218 75206.25042292438 83881.83866847747 61926.12201317929 79490.01701204927 95257.94930721752 75244.46250835664 0.9932617142791167 0.7909430055436788 0.860591395678688 0.8840978927623292 0.9994921608294031 1.114790854664708 0.8229990613103494 1.0564234810398323 1.2659795303426906 1.0 16.199297792575397 2.6678092867060075 0.6562429022047122 1.0860630053404396 0.8637639807746172 0.31828601875992446 0.11398400988736575 0.9542320358283946 0.8699491259979 0.09019609374055956 0.08811065037253862 465.3816839161352 -2.6678092867060075 -0.2222990245658224 LLHVAVSDVNDDVRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLHVAVSDVNDDVRR 15 1 A0A087WW66;Q99460-2;Q99460;H7C378 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 101.62 0.001103 756070000.0 231480.0 210580.0 204520.0 220160.0 210660.0 240150.0 242430.0 179130.0 322510.0 266930.0 False True 230233.73739984588 217589.02800170195 233314.63828029248 248032.23342648684 237486.3023203559 223548.9957522931 230702.73472746517 192497.59020370917 243031.73191259164 249894.29886972954 0.921324489759037 0.8707242581597734 0.9336533059600528 0.9925485877362357 0.9503470202982024 0.894574213030885 0.9232012725817768 0.7703160539250982 0.9725381211649196 1.0 17.93095846235126 2.471795933671092 2.7462207998633903 0.884922777274461 0.9328955822583975 0.0 0.06596745595322549 0.6940390178449074 10.66327763197774 0.02509583988468643 0.02130663096289599 296.34386015406096 -2.471795933671092 0.04797280498393652 LLHYAGEVTYSVTGFLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLHYAGEVTYSVTGFLDK 18 0 O00159-3;F5H6E2;O00159-2;O00159 O00159-3 MYO1C Unconventional myosin-Ic 0 114.29 0.00022234 55845000.0 89367.0 90744.0 92649.0 70628.0 81829.0 105130.0 96155.0 87944.0 116750.0 97654.0 False True 88885.85800160716 93764.35918409354 105693.17388045556 79569.49755834798 92249.43811151815 97862.61054940063 91503.61530222918 94506.8278505835 87978.52686984936 91421.63811420432 0.972262801620012 1.0256254549602652 1.1561067605069948 0.8703573814653092 1.00905474912055 1.0704534787174806 1.0008966934930925 1.0337468218686385 0.9623381147463819 1.0 16.480248049268752 1.2421020657731778 24.934313156945873 0.9811690589742121 1.01872110994672 0.04217074371465057 0.06864038702557895 291.58158937995967 2053064.889876397 0.04876637314470423 0.01619866851934268 17.46232495753429 -1.2421020657731778 0.0375520509725078 LLIDGDGAGDDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLIDGDGAGDDRR 13 1 Q6I9Y2;H7C5E3 Q6I9Y2 THOC7 THO complex subunit 7 homolog 0 ;; 182.43 1.7975e-05 1020040000.0 737660.0 934680.0 881270.0 953540.0 914870.0 849830.0 903700.0 778730.0 945280.0 880500.0 False True 733688.5205217304 965790.2587740079 1005345.1558638421 1074258.066231342 1031373.2716406722 791083.2523846398 859984.5785307518 836842.7869108159 712328.4101030511 824305.7361660249 0.8900684398172827 1.1716408322791123 1.219626543592745 1.303227697077403 1.2512023468837556 0.9596964059283294 1.043283506106211 1.0152092241928374 0.8641555903956244 1.0 19.65282000873982 2.72980604393983 24.771256304459754 0.9861101307903735 1.1778773700289284 0.4170954415409305 0.11206436165796056 590.0334168285685 1669509.135043783 0.03738129594868371 0.03573963535266145 536.792011339269 -2.72980604393983 0.191767239238555 LLIDPNCSGHS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLIDPNCSGHSPR 13 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2;C9JSD5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 LLIDPNCSGHS(1)PR;LLIDPNCS(0.001)GHS(0.999)PR 139.46 2.2929e-06 0.0 293600.0 362070.0 339690.0 349600.0 335690.0 371490.0 381160.0 319260.0 420160.0 415490.0 True False 292019.2902220264 374121.2810740633 387515.39936159033 393859.3241547048 378438.13170948555 345809.7706933977 362721.8346274001 343084.80236943136 316617.19785555336 388973.0724811144 0.7507442311092233 0.9618179445885109 0.9962525089198948 1.01256192785383 0.9729160152284311 0.8890326738753557 0.9325114263404728 0.8820271289758469 0.8139823043172889 1.0 18.569310759358807 2.725623988056722 23.770996440973068 0.8975830837246851 0.9474172370799019 0.03810010985644163 0.08073410498886571 1117.3448671590597 2053109.6153592349 0.026143960720844673 0.024808211347503304 531.6477595833966 -2.725623988056722 0.04983415335521679 LLIHQSLAGGIIGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLIHQSLAGGIIGVK 15 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 161.84 6.4572e-09 0.0 253700.0 441700.0 496550.0 554410.0 518350.0 505400.0 579450.0 487450.0 500320.0 569790.0 False True 252334.10738872012 456401.71748671116 566459.9239100282 624598.2491550617 584358.7999988435 470462.88758363057 551419.789786039 523825.99422094563 377022.8399445221 533425.5143782387 0.47304469056535664 0.8556053379236901 1.0619288141293624 1.170919336100925 1.0954834072381645 0.881965475783442 1.0337334359208041 0.9820040101222337 0.7067956627158719 1.0 19.024927306799633 4.6825088342265 2.8300084663415035 0.9976198098910741 0.4117559727454704 0.6266409288224281 0.12028454767782437 0.22989152712075597 2.7489588932682025 0.030393424009125737 0.2902769311377952 48140.30463886563 -4.6825088342265 -0.5858638371456037 LLILDEVHLLHEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLILDEVHLLHEDR 14 0 Q8N3C0;Q8N3C0-4 Q8N3C0 ASCC3 Activating signal cointegrator 1 complex subunit 3 0 ;;; 200.13 1.1379999999999998e-08 99622000.0 69547.9 78590.0 73314.4 69111.9 65195.1 75939.0 69702.2 22002.9 81703.0 60265.7 False True 69173.46183389815 81205.82064134182 83636.43025981158 77861.45945379714 73497.30954336752 70689.51567117785 66330.43829773844 23644.868126462316 61568.390414109585 56419.4914299384 1.2260561036746955 1.439322095665875 1.4824031223973564 1.3800453970856035 1.3026935847983725 1.252927204403463 1.1756652996439612 0.4190904158685028 1.0912609960436292 1.0 15.78390604095658 1.9519781481513536 7.090296872442333 0.7756519307447858 1.3461135166231295 0.606494019002101 0.18185123453423757 0.1420251578617431 17.625509326472606 0.07574164587872508 0.047622449488935126 89.53197157413636 -1.9519781481513536 0.5704615858783437 LLIQESVWDEAMR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLIQESVWDEAMR 13 0 Q8IZ83;F5H4B6;Q8IZ83-3 Q8IZ83 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 0 128.85 0.00037351 32809000.0 18395.0 15420.0 15700.0 20062.0 20630.0 19442.0 24174.0 16034.0 19425.0 21530.0 False True 18295.963363876628 15933.24537841316 17910.423533153662 22601.847142996805 23257.10821641005 18098.020301545195 23004.611266352105 17230.53849900225 14637.969031664428 20155.936967239646 0.9077208067089059 0.7904988691079051 0.8885929521542105 1.1213493661809226 1.1538589475751426 0.8979002231928351 1.1413317725562715 0.8548616979209561 0.7262360988455253 1.0 14.29891722930112 3.9848511494998253 24.090168259029596 0.9856238540972919 0.8467188214022157 0.16120096697194164 0.13043550148699 740.7152308598313 1177918.0962317132 0.03466035710340695 0.0653559343602703 9657.198305359387 -3.9848511494998253 -0.13890503269507626 LLIVQDAS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 4 LLIVQDASER 10 0 O95772-2;C9JPX5;C9JKL2;O95772 O95772-2 STARD3NL MLN64 N-terminal domain homolog 1 LLIVQDAS(1)ER;LLIVQDAS(1)ER;LLIVQDAS(1)ER;LLIVQDAS(1)ER 143.42 3.5664e-05 185841000.0 330753.0 403760.0 387497.0 377523.0 381794.0 400886.0 363497.0 332288.0 453150.0 397240.0 True False 328972.26259811287 417198.90752192604 442053.2094156973 425317.3730916946 430413.2028296681 373173.69440413796 345913.2614166121 357085.0178842748 341477.2543989054 371887.8031057254 0.8846008388841623 1.121840791867323 1.1886735884425452 1.1436712081971119 1.1573738080011846 1.0034577399088482 0.9301548976003149 0.9601955614090355 0.9182265499087249 1.0 18.504507906744234 2.5434984485918815 4.442291647310217 0.9505611094392737 1.107293877986506 0.4289653643803497 0.08026854392490367 0.20361828069721463 7.849254639857536 0.02747463772712057 0.025222540272472636 349.5412609478773 -2.5434984485918815 0.15673276854723228 LLKEEDMTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLKEEDMTK 9 1 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ; 124.1 0.00049161 1423830000.0 1862520.0 1535390.0 1363880.0 1207240.0 1199900.0 1772420.0 1667520.0 1480320.0 2687900.0 1652920.0 False True 1852492.3992654239 1586494.5279871442 1555902.4489425232 1360076.4602188948 1352700.152635501 1649896.7772278949 1586855.6870549952 1590788.9953126493 2025503.061014715 1547429.230463992 1.1971419195112138 1.025245288607763 1.0054756743065985 0.8789264371147234 0.8741596229443707 1.066217921147307 1.0254786815544263 1.028020515571918 1.308947137057359 1.0 20.561442000609734 1.420162433365431 13.201517177142737 1.15931543245011 1.0057889339216952 0.20897355047086474 0.11055598309397578 1.4366512049500793 329.8694432568633 0.06988792444713883 0.026780307570216787 26.312519399023838 -1.420162433365431 -0.15352649852841482 LLKEGEEPTVYS(ph)DEEEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLKEGEEPTVYSDEEEPK 18 1 O00264;O00264-2 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 1 LLKEGEEPTVYS(1)DEEEPK;LLKEGEEPT(0.001)VYS(0.999)DEEEPK 239.19 3.9933999999999995e-24 429670000.0 299300.0 333450.0 365030.0 269660.0 464510.0 680850.0 512600.0 437990.0 789630.0 497340.0 True False 297688.60205535596 344548.68167521805 416423.0511023621 303798.92835113726 523662.59513352526 633784.4420485063 487803.57967783953 470675.03786815505 595036.2669999067 465599.33540580457 0.6393664668698423 0.7400111114310723 0.8943806819213312 0.6524900386431046 1.124706491853375 1.3612228236883455 1.0476895961474737 1.0109014383749637 1.2780006794496135 1.0 18.82872947338869 3.2294592397303017 24.991302646854198 1.133071613228455 0.7437954775655121 0.7176826341233233 0.12449234500397761 107.22726426227706 294433.0140756776 0.03679475785015037 0.044567289731173854 1696.1304061844535 -3.2294592397303017 -0.38927613566294295 LLKEGEEPTVYS(ph)DEEEPKDESAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLKEGEEPTVYSDEEEPKDESAR 23 2 O00264;O00264-2 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 1 LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR 222.63 8.2976e-33 17799600000.0 4377220.0 5037770.0 5105120.0 3757220.0 6041380.0 8995900.0 7097980.0 6221190.0 12132400.0 6912940.0 True False 4353653.533874863 5205449.129053728 5823876.521501488 4232883.66676355 6810713.932935299 8374034.607070808 6754623.590483238 6685446.788362713 9142532.585830921 6471750.25073431 0.6727165550587927 0.8043340560713228 0.8998920378363934 0.6540554722863835 1.0523758904575358 1.293936614151737 1.0437089394351755 1.0330198986903358 1.412683158592774 1.0 22.62572450357857 3.106500778962157 5.4342535973601125 1.1417960737958037 0.7730607809847206 0.6632304965070991 0.134324942965183 0.1315404750670262 5.844165669314462 0.03860524887918285 0.046481758774321084 1277.911501660359 -3.106500778962157 -0.3687352928110831 LLKGEGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLKGEGPK 8 1 P29373 P29373 CRABP2 Cellular retinoic acid-binding protein 2 0 ; 113.22 0.0050228 0.0 1355720.0 1284760.0 1123960.0 1005720.0 934050.0 1412550.0 1685800.0 1317670.0 2281990.0 1494380.0 False True 1348420.954154652 1327522.4599461812 1282203.7983645485 1133044.048881206 1052995.7309519039 1314903.7432850357 1604251.413618612 1416001.2263926847 1719624.141599378 1399007.3889969129 0.963841195378867 0.9489031082945271 0.9165096685328357 0.8098913971380791 0.7526734592208987 0.939883344167196 1.1467068910685734 1.0121470676491255 1.2291744526326964 1.0 20.415972151584562 2.3846068267636973 5.200742644633746 1.0892808066258286 0.8774868019974824 0.599269601652824 0.08449291072481073 0.15029634493126356 6.648236303493014 0.030611572029756954 0.02543818078408681 242.44142430883997 -2.3846068267636973 -0.2117940046283462 LLKPECVLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLKPECVLDK 10 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 84.71799999999998 0.013434 421300000.0 330300.0 300610.0 276620.0 261200.0 282360.0 336970.0 356230.0 336110.0 520660.0 397120.0 False True 328521.70149977965 310615.62212741724 315565.69157585775 294267.8932185609 318316.87232116 313676.0570420575 338997.7939692483 361192.2349319971 392350.3194865586 371775.4616084631 0.8836562264718903 0.8354925330024697 0.8488072080136292 0.7915204837495983 0.856207321871062 0.8437244773631853 0.9118347738782859 0.9715332834752505 1.0553421621456125 1.0 18.504072025264243 1.8022363704858113 1.6321395491669837 1.0270327142152718 0.8401842223786917 0.8880112788201819 0.026622749071304103 0.10399219381743355 0.5318433903068592 0.018735723188411088 0.0077989327844628815 63.42147970873691 -1.8022363704858113 -0.18684849183658003 LLKPGEEPSEYT(ph)DEEDTKDHNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLKPGEEPSEYTDEEDTKDHNK 22 2 U3KQM0;O15173;O15173-2;U3KPU8 U3KQM0 PGRMC2 Membrane-associated progesterone receptor component 2 1 LLKPGEEPSEYT(0.999)DEEDTKDHNK 197.08 9.7652e-21 484350000.0 425070.0 302540.0 282760.0 182210.0 277440.0 537180.0 333510.0 318660.0 637730.0 358480.0 True False 422781.47034971666 312609.8610107079 322570.15020602127 205277.76731758768 312770.33948428516 500046.0109857042 317376.8471680764 342440.02732269285 480569.98664418823 335601.4994898312 1.2597722924135117 0.9314912522319646 0.9611701696696239 0.6116711863017396 0.931969433866496 1.4899993347641634 0.9456955575304066 1.0203769287183082 1.4319661484669546 1.0 18.35638963628639 2.9485732558969775 24.9992453609569 1.1527784791192353 0.9205377659067789 0.2197933793731609 0.22083206967284627 562.6703326717197 273521.410339933 0.06797242765215952 0.07209641935625975 888.3278049834485 -2.9485732558969775 -0.23224071321245632 LLKPGEEPSEYT(ph)DEEDTKDHNKQD ddPTM_BT-474_Trastuzumab_2h_R1 5 LLKPGEEPSEYTDEEDTKDHNKQD 24 3 U3KQM0;O15173;O15173-2;U3KPU8 U3KQM0 PGRMC2 Membrane-associated progesterone receptor component 2 1 LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPS(0.05)EYT(0.95)DEEDTKDHNKQD 282.46 1.3102999999999997e-52 5985980000.0 3233780.0 2156218.0 2154756.0 1653194.0 2252238.0 4013990.0 3004720.0 2494975.0 5544900.0 2886210.0 True False 3216369.687786736 2227986.4126686957 2458126.9153250977 1862488.1908941998 2539047.159239503 3736512.3192161038 2859370.214454931 2681162.7037263424 4178433.6928533437 2702009.606791301 1.1903620474563188 0.8245664290270533 0.9097402574538512 0.6892973978378809 0.9396884277753106 1.3828641873902507 1.0582383598000968 0.9922846673037129 1.546417038026497 1.0 21.365601373390263 2.9717223434395716 22.66092507605168 1.1665018818381416 0.887824471987535 0.33437865911604536 0.19908981472176285 267.06410459896904 214017.69767152148 0.05972156411194916 0.0635258753230429 936.9627889859454 -2.9717223434395716 -0.2786774098506066 LLKPLNIPELLFATDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLKPLNIPELLFATDR 16 1 Q8WU76-2;Q8WU76 Q8WU76-2 SCFD2 Sec1 family domain-containing protein 2 0 112.3 0.00068378 177340000.0 80449.0 110880.0 86541.0 84085.0 91675.0 103270.0 103420.0 101420.0 134160.0 96255.0 False True 80015.87152272426 114570.57377162456 98725.2205721433 94730.15237857065 103349.26784970395 96131.1879714316 98417.17949723394 108988.47540032493 101098.06565189717 90111.92349194859 0.8879609758843245 1.271425237991522 1.095584432630209 1.051249920184366 1.1468989213057703 1.0667976472616394 1.0921660051572133 1.2094789587979768 1.1219166313870792 1.0 16.459430393741243 LLLAEDS(ph)EEEVDFLSER ddPTM_BT-474_Trastuzumab_2h_R1 18 LLLAEDSEEEVDFLSER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER 404.11 3.2003999999999977e-140 5304402700.0 1932676.7 2286746.0999999996 2079040.6 2191776.2 2052588.5999999999 2242075.0 2267329.2 2038670.6 2491396.2 2397007.8 True False 1922271.3833877696 2362859.06157129 2371751.445135153 2469254.8421921222 2313973.591564205 2087085.6325268464 2157649.824557339 2190806.552331547 1877424.9895086973 2244028.7100223755 0.856616216540564 1.0529540246157232 1.0569167116901566 1.100366867484285 1.031169334522967 0.930061911955679 0.961507228013952 0.9762827643634301 0.8366314482179585 1.0 21.09765970317727 2.743317226847721 24.17893946403985 0.9442454327383736 1.0280170646852804 0.22379373559421456 0.0723150040942423 377.8434194866441 1920663.5611130204 0.02232864199086942 0.022976239293169484 553.7544469260478 -2.743317226847721 0.08377163194690684 LLLAS(ph)PPNER ddPTM_BT-474_Trastuzumab_2h_R1 1 LLLASPPNER 10 0 Q52LW3 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 LLLAS(1)PPNER 81.377 0.02223 124400000.0 85582.0 118150.0 112520.0 103810.0 107320.0 111090.0 102490.0 106860.0 115950.0 117490.0 True False 85121.23602105405 122082.55132681674 128361.83795862735 116952.33535612082 120986.56586452374 103410.60977773165 97532.16715017892 114834.43582408501 87375.67615039847 109991.68761175046 0.7738878988884658 1.109925249603813 1.1670139875634966 1.0632833980049485 1.0999609924304743 0.9401674983181569 0.8867230721511316 1.044028310843166 0.7943843580145605 1.0 16.747034973691854 2.7231386181174546 23.378918041443857 0.9408924829729189 1.0545798420049375 0.17723972909368368 0.11625743053148212 595.1035723105842 902141.7096416985 0.03703097900101792 0.03505489283690705 528.6139478571627 -2.7231386181174546 0.11368735903201854 LLLDTS(ph)PPGGVVLSSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLLDTSPPGGVVLSSFR 17 0 O15211;A2AB89 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 LLLDT(0.043)S(0.957)PPGGVVLSSFR;LLLDT(0.008)S(0.992)PPGGVVLSSFR;LLLDT(0.007)S(0.993)PPGGVVLSSFR;LLLDT(0.075)S(0.925)PPGGVVLSSFR 170.16 1.9759e-09 552423000.0 705771.0 794675.0 756938.0 760628.0 660294.0 786272.0 857891.0 681307.0 878122.0 893533.0 True False 701971.2073545298 821125.2769838177 863508.2909769595 856923.4268110547 744378.5270308406 731918.8673252 816391.5348681265 732149.5879468466 661720.599331955 836506.9589479114 0.8391695966730636 0.9816120095600406 1.0322786699383926 1.024406811736296 0.8898653132151558 0.8749704464452351 0.9759530702469177 0.8752462607934347 0.791052115291679 1.0 19.67401801661064 3.2173882786013746 24.982090143712472 0.8976489489116714 0.974735143973313 0.17079253475129785 0.07297313594627276 377.4795982850574 445402.3685315029 0.021167830152994786 0.025324600866761738 1649.6365809761255 -3.2173882786013746 0.0770861950616416 LLLEFTDTSYEEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLEFTDTSYEEKR 14 1 P21266;A0A0A0MTN3 P21266 GSTM3 Glutathione S-transferase Mu 3 0 ; 108.32 0.0013345 295327000.0 175971.0 201593.0 186338.0 168516.0 155348.0 193792.0 233471.0 188559.0 248504.0 193184.0 False True 175023.59168821626 208302.90113945806 212572.77072106948 189850.10832166515 175130.64698026498 180395.61517729895 222177.11578416848 202630.23006320134 187263.51898299812 180854.8317268565 0.9677573444792058 1.1517685159446343 1.1753778911592272 1.049737551985308 0.9683492849378958 0.9974608555095111 1.228483163334672 1.120402635243011 1.035435532437533 1.0 17.464472616059247 LLLEGISSTHVNHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLLEGISSTHVNHLR 15 0 B7ZC38;Q9NR46;Q9NR46-2;B7ZC39 B7ZC38 SH3GLB2 Endophilin-B2 0 92.063 0.0031153 143740000.0 34268.0 58414.0 56188.0 54488.0 56884.0 57074.0 55746.0 26077.0 55399.0 45566.0 False True 34083.50489553272 60358.2746779913 64098.78200514895 61386.17521321951 64127.84022211671 53128.60871774463 53049.353009599705 28022.99815632292 41746.65875856772 42657.93886898471 0.7989955867350591 1.4149364990036113 1.5026225763512737 1.439032846892927 1.5033037676544216 1.2454565346187607 1.2435985989039493 0.6569233980664169 0.9786375025475139 1.0 15.380526639289549 1.8879096617829492 5.5216261522418515 0.8543193090310961 1.3366396902143425 0.463323788792688 0.21117253300761887 0.18255678384267843 7.545965284595634 0.09473928046933415 0.05662226034768857 77.25198754160931 -1.8879096617829492 0.4823203811832464 LLLEHLECLVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLEHLECLVSR 12 0 Q13136-2;A0A2R8Y7R9;Q13136;E9PJZ7;E9PPF6;O75335;G3V200;O75334-2;O75334-4;O75334-3;B1APN9;O75334;F8VWR9;O75334-5;O75334-6;O75145-2;O75145;R4GN36;R4GNF1 Q13136-2;O75145-2 PPFIA1;PPFIA4;PPFIA2;PPFIA3 Liprin-alpha-1;Liprin-alpha-4;Liprin-alpha-2;Liprin-alpha-3 0 ; 154.28 7.136100000000001e-05 205409000.0 211526.0 254791.0 235581.0 238430.0 229096.0 236488.0 233241.0 203182.0 275740.0 235345.0 False True 210387.16751874812 263271.5644105879 268748.7570932407 268615.2135532213 258270.01764162234 220140.14119287254 221958.2417628541 218344.47257729043 207787.57172670006 220325.08061100822 0.9548943176841231 1.1949232637540854 1.2197828606164278 1.219176740152752 1.1722225037902392 0.9991606066017414 1.0074125067709803 0.9910105194187374 0.943095407706018 1.0 17.74927420739467 2.723389476243346 7.306839338641118 0.9891303232452487 1.1621749472423009 0.5558809463958931 0.07305536688597306 0.12401923267022705 38.22042642092909 0.023607608897582892 0.022973034985242228 528.9193752010141 -2.723389476243346 0.17304462399705212 LLLERPS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 10 LLLERPSPIR 10 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR 134.04 0.00010969 13295399000.0 3044374.0 3576778.0 3444480.0 3145925.0 2534207.0 2966768.0 3217077.0 2667275.0 3775054.0 2915311.0 True False 3027983.428645747 3695828.8935220386 3929432.8440431315 3544198.782441042 2856923.240028302 2761682.3111806745 3061454.695082411 2866320.6046480127 2844742.524831964 2729253.3560566795 1.1094548704780867 1.3541538330695326 1.4397464549500503 1.2985964731254647 1.046778318945107 1.0118819878162024 1.1217187617589697 1.050221518748766 1.0423152978887045 1.0 21.38007489525197 3.2506225212491393 6.799503198238426 1.0513693811832094 1.3154603822905149 0.6926993850481822 0.08294415644175011 0.08211739081532547 16.937061822160153 0.02357757222496339 0.030699359436649195 1780.8302379873246 -3.2506225212491393 0.26409100110730543 LLLERPS(ph)PIRDR ddPTM_BT-474_Trastuzumab_2h_R1 8 LLLERPSPIRDR 12 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR 182.49 8.7737e-06 17439867000.0 2071932.0 2931066.0 2541909.0 2914272.0 2614193.0 2531613.0 2561191.0 2347681.0 2700648.0 2601043.0 True False 2060776.9483252869 3028624.759943184 2899787.6925309002 3283218.536392958 2947094.9830141375 2356608.5520859896 2437296.406630247 2522876.8775025643 2035109.4872291621 2435042.20887505 0.8463002985386986 1.2437668426874455 1.1908572598708895 1.348320996008423 1.2102849684793135 0.9677896109959855 1.0009257325178929 1.0360711072306596 0.8357594294717995 1.0 21.215515349437517 2.7357737611063775 24.60689886068231 0.978511324686534 1.1834186820312076 0.3657542518075637 0.1303959237992697 216.85481020859484 1914738.7907056573 0.04128524104850037 0.04055585086605757 544.2190766006942 -2.7357737611063775 0.20490735734467358 LLLFDYDKVELANMNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLFDYDKVELANMNR 16 1 Q9GZZ9-2;Q9GZZ9;E7EWE1;E7EQ61;C9JRV9;C9J5W5;C9J0F6 Q9GZZ9-2 UBA5 Ubiquitin-like modifier-activating enzyme 5 0 ; 195.54 4.3976e-11 702550000.0 357680.0 361340.0 382240.0 350850.0 318230.0 424390.0 468040.0 374320.0 548380.0 459530.0 False True 355754.2906219836 373366.98346535745 436056.06951035984 395267.57402653934 358754.7042030136 395052.9182066027 445399.1171135695 402253.6591584458 413239.09691552893 430202.40197657334 0.8269463140778934 0.8678867940995112 1.0136067755709677 0.9187944377122832 0.833920737203484 0.9182954729948609 1.0353245706373897 0.9350335035561946 0.960569013601258 1.0 18.714656054311725 2.459691995859762 24.212757494177875 0.97510300033422 0.8967984679965402 0.37667123395681557 0.05464441434531627 211.21046359961622 293411.2072006377 0.019750173744500235 0.016528058481866757 288.19868565480374 -2.459691995859762 -0.07830453233767987 LLLIQAFRPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLIQAFRPDR 11 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 219.89 8.7095e-12 1820930000.0 1059880.0 1325010.0 1233860.0 1205560.0 1021030.0 1139690.0 1214030.0 1008380.0 1537570.0 1208760.0 False True 1054173.7238437387 1369112.1568645425 1407576.7630966227 1358183.7723911486 1151052.1183810525 1060905.9128416856 1155302.730855027 1083630.4360498877 1158656.4758824336 1131615.9019284996 0.9315649612622233 1.2098735573893067 1.2438644249323738 1.2002162306808628 1.0171756303701898 0.9375141433004697 1.0209318629105162 0.9575956242777827 1.023895540799534 1.0 20.109952924652944 3.1435477687530566 5.4545941534517555 0.9854009166484918 1.1573499379138585 0.4487811417960108 0.08328868486315659 0.17560010859764033 8.133046800103694 0.02420614212416476 0.029264291595876436 1391.706862517 -3.1435477687530566 0.1719490212653667 LLLLAGVDRLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLLLAGVDRLDK 12 1 Q9Y570;Q9Y570-4;Q9Y570-2;Q9Y570-3 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 149.26 0.00033595 0.0 128050.0 150210.0 136570.0 147940.0 144690.0 160090.0 186400.0 144100.0 233580.0 181970.0 False True 127360.59302769232 155209.6490461376 155797.86891228013 166669.18883137024 163115.41385518012 149023.35511132455 177383.1198828504 154853.47372497365 176017.3388116435 170356.51880764487 0.747612089746324 0.9110872312517134 0.9145401068461407 0.9783552164479358 0.9574944064181018 0.8747734231385164 1.0412464467129638 0.9089964669906397 1.0332292538238026 1.0 17.37819762863081 5.5521713586508135 0.9888035849187784 0.9640052846953089 4.806815366687963e-10 0.6389233457359641 0.04952422874318412 4.963072372453265 1.1917072634211798 0.01378643858767895 7.476822385146881 356591.80534295714 -5.5521713586508135 -0.9640052842146274 LLLPGELAK ddPTM_BT-474_Trastuzumab_2h_R1 3 LLLPGELAK 9 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;A0A2R8Y619;Q99880;Q96A08 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL;HIST1H2BA Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A 0 ;; 136.75 0.00042785 5160130000.0 9548190.0 10968230.0 9556450.0 9705130.0 10139610.0 10970060.0 11364120.0 10938430.0 14918860.0 11271460.0 False True 9496783.605943635 11333300.905114947 10901915.09384753 10933798.4629106 11430829.231322989 10211725.572943585 10814394.100445807 11754711.190822074 11242306.855481967 10552105.772817587 0.899989424898253 1.074032155203536 1.0331506647640945 1.0361721819616574 1.083274701507353 0.9677429124383089 1.024856491516971 1.113968286889468 1.065408848008551 1.0 23.331027595357394 4.7447379094083955 24.775021593738185 1.0481871961449827 0.8999893502438318 0.5340561516944904 0.04028759387486692 498.50404588944093 1999267.602215112 0.009968315741276533 0.09331531381610461 55556.88781038469 -4.7447379094083955 -0.14819784590115093 LLLPHWAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLPHWAK 8 0 P04062-4;P04062-5;P04062-2;P04062;A0A0G2JNZ5;A0A0G2JNZ0;A0A0G2JLB3;P04062-3 P04062-4 GBA Glucosylceramidase 0 ; 119.89 0.0016077 552650000.0 573370.0 773830.0 759870.0 579270.0 487490.0 594010.0 651250.0 543370.0 980870.0 546570.0 False True 570283.0396273957 799586.4637598878 866853.0910915588 652605.5226061086 549568.9619203941 552947.486849134 619746.5494834039 583919.0285769529 739147.731484617 511687.4346578804 1.1145144496438395 1.5626462750536365 1.6941066603895518 1.2753987657376178 1.0740325532672923 1.0806352655871656 1.211181880785822 1.141163509257106 1.4445297684099259 1.0 18.96490328042627 3.4885989722141235 21.46227143219889 1.1647655788030074 1.4704963378084563 0.3653775975534559 0.17568548946089277 84.41487021584541 157847.1357221353 0.04667407193536823 0.06792472762647957 3080.3422467055243 -3.4885989722141235 0.305730759005449 LLLPWLEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLPWLEAR 9 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 119.17 0.0020242000000000003 533440000.0 1041100.0 1383980.0 1664150.0 1186540.0 659380.0 860750.0 1253030.0 693110.0 1967190.0 931820.0 False True 1035494.8332770836 1430044.9376664222 1898447.8549488948 1336755.8423413127 743348.1345485433 801248.3784875551 1192416.1518605587 744833.3877412656 1482402.3834954947 872350.4498287609 1.187017022207471 1.6393009689478977 2.176244484451808 1.532361039767576 0.8521209964349301 0.918493684097758 1.3669003691058168 0.853823584188526 1.6993197903279407 1.0 19.73454830056345 3.398202870249518 6.29463054695991 1.1015609854209762 1.6948247340788172 0.3753441100739958 0.3300365115679774 0.2000847428713424 12.605276423805469 0.0905305196180826 0.12322366106963892 2501.5136108932957 -3.398202870249518 0.5932637486578409 LLLQQLEATLETGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLLQQLEATLETGKR 15 1 Q14CX7;Q14CX7-2 Q14CX7 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit 0 ; 182.1 8.990899999999998e-07 223880000.0 186448.0 223513.0 194202.0 191949.0 214817.0 196634.0 238996.0 209341.0 274570.0 228266.0 False True 185444.1846843201 230952.495088538 221543.95356595618 216249.7237190254 242172.6716298866 183041.15440664743 227434.85042661917 224963.08843205863 206905.90254950346 213697.86845164507 0.8677867777903543 1.0807430919265217 1.0367157855675406 1.0119414165703657 1.1332479513462472 0.8565417883335857 1.0642822601577913 1.0527156403666358 0.9682169693532602 1.0 17.705212992216577 4.751724584333774 23.890158382305795 1.0258786499524244 0.867786585221248 0.30201496858094845 0.07050856444365958 1379.69444460547 2503805.656091387 0.01586529663447063 0.2866577044548768 56457.88234327389 -4.751724584333774 -0.15809206473117643 LLMHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLMHGK 6 0 F8VZX2;F8W1G6;F8W0G4;P57721;P57721-4;E9PFP8;P57721-5;P57721-3;P57721-2;F8VTZ0;J3QT27;F8VXH9;H3BSP4;Q15366;Q15366-6;Q15366-2;Q15366-3;Q15366-5;Q15366-4;Q15366-8;Q15366-7;Q15365 F8VZX2;Q15366;Q15366-2;Q15366-5;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 3;Poly(rC)-binding protein 2;Poly(rC)-binding protein 1 0 ; 88.626 0.051089 8451200000.0 19472000.0 21021000.0 18759500.0 16701600.0 14117900.0 18829600.0 17192200.0 15917600.0 28453000.0 19219700.0 False True 19367164.915542565 21720671.277537167 21400674.539502934 18816020.84754636 15915730.88165078 17527954.07211066 16360547.60541817 17105452.13993504 21441139.400666565 17993082.291186996 1.0763672728284355 1.2071678951958078 1.189383463776241 1.0457363859644238 0.8845472178741881 0.9741496086357503 0.9092687589958702 0.9506682547832999 1.1916323759141827 1.0 24.100939011740895 3.5529929709641794 4.35623904178047 0.9739145601229338 1.1604739013677623 0.4503497507876765 0.0844323453825546 0.18440515325763016 6.511346040714221 0.022885441804299928 0.03563988668860497 3572.6705575459405 -3.5529929709641794 0.18655934124482854 LLNEEVLS(ph)YS(ph)SLLETIEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLNEEVLSYSSLLETIEVK 19 0 Q8NF91;Q8NF91-4;A0A0C4DG40;Q8NF91-7 Q8NF91 SYNE1 Nesprin-1 2 LLNEEVLS(0.58)Y(0.544)S(0.58)S(0.148)LLET(0.148)IEVK 48.547 0.07517 45678000.0 3469.5 5038.5 3638.3 5194.1 4603.8 4060.5 3744.9 4402.6 4952.1 5346.6 True False 3450.820597497689 5206.203426662435 4150.541015329489 5851.672527436928 5190.06664113953 3779.8071923888647 3563.7448800927436 4731.144367949815 3731.7213097403046 5005.375410545444 0.6894229332384177 1.0401224682755827 0.829216726998145 1.169077651020638 1.036898577118706 0.7551495906631653 0.7119835352578273 0.9452126923351499 0.7455427422842702 1.0 12.289262562039278 2.7382807036386665 24.999228836737206 0.8280373743309187 0.9629239942825161 0.1440480290512397 0.1467989561947144 46.91450632763713 4189762.74748142 0.04523356099482826 0.04516055063303872 547.3696376725946 -2.7382807036386665 0.13488661995159734 LLNEVMVEHFFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLNEVMVEHFFR 12 0 Q9H871 Q9H871 RMND5A Protein RMD5 homolog A 0 172.99 0.00015878 0.0 80222.0 95249.0 91792.0 102200.0 82374.0 94487.0 87124.0 77283.0 113430.0 95846.0 False True 79790.09366550205 98419.3053857637 104715.51572963323 115138.50952119782 92863.84063104994 87955.33608847343 82909.47927399939 83050.24989512243 85476.69638412862 89729.02622211106 0.8892339193338994 1.0968502560380085 1.1670194154389384 1.2831801967424599 1.034936458590101 0.9802328164216658 0.9239984291010706 0.9255672706125629 0.9526092055489779 1.0 16.453287134067285 2.8490336462883077 3.3538548752507396 0.9459200519421548 1.1156168443835441 0.3579639050546184 0.0942904771919837 0.2618605654470527 5.524686975598289 0.03144910168809011 0.03352235781237002 706.3722772347205 -2.8490336462883077 0.16969679244138935 LLNGNHENGDLDPT(ph)SPLENMDYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLNGNHENGDLDPTSPLENMDYIK 24 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73;F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9;F5H6X8;F5H221;F5H592 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 LLNGNHENGDLDPT(0.5)S(0.5)PLENMDYIK 136.67 7.0298e-05 65894000.0 55388.0 54147.0 51134.0 46832.0 47304.0 50504.0 60492.0 51667.0 62575.0 56935.0 True False 55089.79716218529 55949.25016244731 58333.222735304415 52760.92639820689 53327.88400722542 47012.77735362821 57565.770858119104 55522.65389970997 47154.2297120413 53301.35955549413 1.0335533206208212 1.0496777310942014 1.0944040306246112 0.9898607997658189 1.000497631804376 0.882018352734162 1.0800056759937826 1.0416742530160636 0.8846721754432396 1.0 15.701884711763807 3.7163607048476535 22.910744846594373 0.9901113979643628 1.0582582890074674 0.24998562543865532 0.05978080308111257 420.5068907312841 433971.20434209215 0.016353581145334577 0.02536548069632642 5204.280604844137 -3.7163607048476535 0.06814689104310467 LLNGNHENGDLDPTS(ph)PLENMDYIK ddPTM_BT-474_Trastuzumab_2h_R1 7 LLNGNHENGDLDPTSPLENMDYIK 24 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73;F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9;F5H6X8;F5H221;F5H592 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 LLNGNHENGDLDPT(0.193)S(0.807)PLENMDYIK;LLNGNHENGDLDPT(0.277)S(0.723)PLENMDYIK;LLNGNHENGDLDPT(0.294)S(0.706)PLENMDYIK;LLNGNHENGDLDPT(0.144)S(0.856)PLENMDYIK;LLNGNHENGDLDPT(0.032)S(0.968)PLENMDYIK;LLNGNHENGDLDPT(0.071)S(0.929)PLENMDYIK;LLNGNHENGDLDPT(0.153)S(0.847)PLENMDYIK 190.28 7.8648e-18 1620560000.0 913334.0 816439.0 768472.0 709888.0 723936.0 910490.0 880094.0 834185.0 1004781.0 876232.0 True False 908416.7112249469 843613.6785672028 876666.1779216347 799759.7480135433 816124.958495153 847549.9693629212 837520.4909344288 896436.1206056013 757166.1859256029 820310.123580043 1.1074064370440588 1.0284082255201936 1.0687009128884568 0.9749480410203734 0.9948980696878093 1.0332067653438148 1.020980318125632 1.0928014842646645 0.9230243101488693 1.0 19.645809907541302 5.7163380300570985 1.058327850298098 1.0182930558207168 1.6110514057486005 0.28481225850293257 0.044609493475878226 17.073988182579182 3.2256785367729823 0.013028221728169687 18.532850398218795 520400.8893143686 -5.7163380300570985 0.5927583499278837 LLNNAFEELVAFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLNNAFEELVAFQR 14 0 P25205;P25205-2;J3KQ69;A0A499FHX9 P25205 MCM3 DNA replication licensing factor MCM3 0 ; 177.1 4.9688e-06 78921000.0 49874.0 66199.0 49645.0 57315.0 68671.0 61970.0 63916.0 57580.0 65511.0 80674.0 False True 49605.483925522305 68402.39369685945 56634.58447792445 64571.07312336067 77415.84480509422 57686.15976168896 60824.13889716885 61876.91198531558 49366.69185242569 75525.31625151381 0.6568060405113236 0.9056882790012601 0.7498755025311037 0.854959321299981 1.0250317197916072 0.7637989832387192 0.8053476889075549 0.8192870292559065 0.653644291776616 1.0 16.204672699595488 -2.5169710426857734 2.180322389376365 3.5095873185154605 0.8127474912461787 0.233151998070662 0.10562308974417348 5286200.494561912 382112.9548499112 65720401.02653222 0.024479450564587307 0.003041087788553972 2.5169710426857734 -2.6968398272692817 LLNQADPCVQILIQETGEHVLVTAGEVHLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLNQADPCVQILIQETGEHVLVTAGEVHLQR 31 0 Q7Z2Z2-2;Q7Z2Z2 Q7Z2Z2-2 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 0 ; 226.5 1.8754e-35 145209000.0 56121.0 55855.8 55257.5 60489.4 56930.0 63584.7 57992.0 58212.0 59301.9 63797.6 False True 55818.850771629295 57714.92653745585 63037.27569319991 68147.35183788203 64179.698049453385 59189.23935128391 55186.705409046546 62556.07503454654 44687.7413497483 59725.98254812669 0.9345823775548764 0.9663286240783006 1.0554414176845899 1.1410000962808686 1.074569145810836 0.9910132378917287 0.923998284407922 1.0473846116158807 0.7482127449931744 1.0 15.866071062105481 2.4760141376284777 5.061922412449398 0.9463176145891542 1.0375944205896166 0.22207676050412006 0.0899673286503687 0.32191999995291226 24.527393304154007 0.03180008397126768 0.027746617757347495 299.23620456614117 -2.4760141376284777 0.0912768060004624 LLNSTNREDEDT(ph)PPNSPNVDLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLNSTNREDEDTPPNSPNVDLGK 23 1 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 1 LLNSTNREDEDT(1)PPNSPNVDLGK 139.16 1.3447999999999998e-06 271930000.0 130090.0 117080.0 110890.0 103430.0 112160.0 120140.0 122300.0 120100.0 154350.0 129520.0 True False 129389.6098943577 120976.9370236453 126502.34812684129 116524.2273950831 126442.91117559634 111835.00457913995 116383.88176862993 129062.47185544297 116312.51068403624 121253.92271234919 1.0670962802688768 0.9977156558525452 1.0432845824455754 0.9609934655187499 1.042794396644445 0.922320714064206 0.9598360132622475 1.0643983218721758 0.9592474048032618 1.0 16.88767189543645 7.999995278126369 0.8059388073506681 0.9934375198668614 19.296458614284035 0.21558606595503316 0.042620409089527876 896.4625179237037 2.9997658657299837 0.014168017138212955 29977.235751875243 99998912.75432724 -7.999995278126369 18.303021094417172 LLPDGAADGSFYLHS(ph)PEGPSKPSLASPYLPEGTSKPLSDRPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLPDGAADGSFYLHSPEGPSKPSLASPYLPEGTSKPLSDRPTK 43 3 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 LLPDGAADGSFYLHS(1)PEGPSKPSLASPYLPEGTSKPLSDRPTK 235.43 8.64e-55 332600000.0 174780.0 141050.0 137560.0 129080.0 128590.0 212420.0 186760.0 170390.0 229320.0 191890.0 True False 173839.00389988357 145744.7639834745 156927.25230704588 145421.5147651294 144965.17428735676 197735.90538289433 177725.70530751714 183105.3670228886 172807.1587305683 179643.4159147057 0.9676892582716304 0.8113003376236945 0.8735485879513369 0.8095009439932673 0.806960686809618 1.100713345802659 0.989324904575968 1.0192712384729237 0.9619454064078629 1.0 17.454776534735025 2.7481295971700836 24.992228312643 1.0136627866147772 0.8500749579571166 0.678554224291584 0.05518664268760436 375.9831574312404 981991.2893547339 0.01631754128940096 0.017102757233487254 559.9246628530391 -2.7481295971700836 -0.16358782865766053 LLPDITLLEPVEGEAAEELSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLPDITLLEPVEGEAAEELSR 21 0 O15160;A0A2R8YEY5;A0A2R8YEZ4;A0A2R8Y5D3;O15160-2 O15160 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 0 108.17 0.00065272 0.0 6358.7 6065.5 5782.3 4938.2 4664.5 6776.3 6932.4 7634.5 6682.5 6986.9 False True 6324.465465717983 6267.386500827822 6596.397579347415 5563.375613674948 5258.496426342447 6307.870330694412 6597.053327660269 8204.225157205485 5035.687415912358 6540.990060213961 0.9668972751062557 0.9581709256752502 1.008470815369446 0.8505402947352844 0.8039297381489121 0.9643601767662793 1.0085710675188633 1.2542787990320103 0.7698662388347425 1.0 12.675293306754828 2.248909219738124 3.7178489869062763 1.0554661438303616 0.919424041557437 0.05769595432236785 0.12486027132868509 0.37311625445744323 11.163876802888822 0.048401202240771136 0.03698987864375156 177.38186621017542 -2.248909219738124 -0.13604210227292468 LLPDPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLPDPGSPR 9 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 LLPDPGS(1)PR;LLPDPGS(1)PR 109.16 0.002617 146699000.0 536240.0 652220.0 569010.0 663880.0 596460.0 584170.0 564360.0 537460.0 658940.0 618670.0 True False 533352.9434218649 673928.7484246846 649121.6620764183 747927.1399308508 672415.6455046023 543787.7028882664 537059.7507354381 577567.9943665807 496553.06634362735 579185.9509299655 0.9208665068023332 1.1635792396942573 1.120748286511717 1.29134199254997 1.1609667748759156 0.9388827578002158 0.9272665365468762 0.9972064989477267 0.8573292662681834 1.0 19.14366708243547 2.73653400081068 24.883760642347852 0.9469983947706361 1.14156544403394 0.5027499399737209 0.09287690657647915 140.57295186778782 1726013.478592931 0.029526129252128944 0.029139948958822003 545.1725754481881 -2.73653400081068 0.19456704926330393 LLPEGEETLES(ph)DDEKDEHTSK ddPTM_BT-474_Trastuzumab_2h_R1 5 LLPEGEETLESDDEKDEHTSK 21 1 Q8N6N3 Q8N6N3 C1orf52 UPF0690 protein C1orf52 1 LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEET(0.013)LES(0.987)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK 341.06 7.539199999999997e-81 3439000000.0 2004160.0 1449897.0 1671292.0 1493718.0 1539090.0 2428570.0 2292010.0 2396740.0 3673350.0 2309400.0 True False 1993369.825243109 1498155.9451637568 1906595.3864695213 1682822.5456456447 1735083.988598861 2260688.672138855 2181136.719971524 2575596.909199119 2768102.1128681847 2162012.1148231863 0.9219975279399073 0.6929452128839153 0.8818615646959251 0.7783594430890917 0.8025320379579648 1.0456410751073606 1.0088457437482499 1.1912962427640035 1.2803360785490168 1.0 21.043943176553242 2.4301995961591887 1.4462453700305027 1.1638724906162463 0.8058924091020602 0.6986999243817775 0.09571948251530547 0.2026773064498829 0.8565333702373481 0.04624759588335989 0.0331451782028599 269.27720830087264 -2.4301995961591887 -0.35798008151418614 LLPEKHEIENLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLPEKHEIENLR 12 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 ; 242.48 1.6189e-16 381730000.0 504600.0 536240.0 541270.0 530840.0 521110.0 630260.0 652070.0 540310.0 863040.0 677900.0 False True 501883.289666331 554088.4242360747 617476.1111968203 598044.2895717486 587470.2696390423 586691.6096724558 620526.8829506997 580630.6758385876 650355.3561435094 634635.8416206107 0.7908209035038397 0.8730808881218408 0.9729612963869624 0.9423424432578191 0.9256808883325499 0.9244539485420109 0.9777684181311249 0.9149036939922663 1.0247693456498725 1.0 19.275569475471976 4.51078546057437 2.734372777251696 0.9531921466580665 0.7897079083995587 0.709906759809016 0.03441590156449101 0.15981890736844304 2.100952654224545 0.008164451818778725 0.04607974479008747 32417.943467618643 -4.51078546057437 -0.16348423825850777 LLPET(ph)VSPSAPSWR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLPETVSPSAPSWR 14 0 B0QXZ6;O95503 B0QXZ6 CBX6 Chromobox protein homolog 6 1 LLPET(0.634)VS(0.354)PS(0.012)APSWR 85.45 0.086427 40392000.0 93139.0 90814.0 84009.0 110080.0 86543.0 104250.0 93445.0 94797.0 118620.0 92826.0 True False 92637.54997271577 93836.68909177765 95836.73698068189 124016.11671324342 97563.73806945099 97043.44287810354 88924.70835543452 101871.23350941241 89387.69042656543 86901.765207663 1.0660030869493429 1.0798018759175114 1.1028169192152497 1.4270839771423616 1.1226899457831474 1.1167027809642955 1.0232785046763715 1.172257355946429 1.0286061533153208 1.0 16.40709786188805 2.740127450102163 3.5489948876852258 1.0807814929216846 1.1683464476877874 0.15695604656423612 0.1061335699244515 0.5367389383437534 14.714469623057061 0.036417400486832556 0.03644817914169285 549.7021683742101 -2.740127450102163 0.08756495476610282 LLPETVS(ph)PSAPSWR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLPETVSPSAPSWR 14 0 B0QXZ6;O95503 B0QXZ6 CBX6 Chromobox protein homolog 6 1 LLPET(0.001)VS(0.735)PS(0.264)APSWR;LLPET(0.003)VS(0.982)PS(0.015)APSWR 142.03 9.9788e-06 372540000.0 252230.0 313980.0 296790.0 285470.0 312230.0 273520.0 257750.0 274800.0 292280.0 272750.0 True False 250872.02170538777 324430.63449508155 338575.45225507533 321610.4727301014 351990.6397677999 254612.20619682388 245281.6477993818 295306.9714061254 220251.510351345 255342.861486977 0.9824908370042009 1.2705686487798218 1.3259640402061657 1.2595240409589605 1.3785019785475856 0.997138532536613 0.9605972392217892 1.1565115613039634 0.8625716382620638 1.0 17.962076201232218 2.720667488826254 24.71260361261035 1.0145906273186234 1.250400297960392 0.51819538248504 0.11877267867355353 608.4827929330725 840388.2525378725 0.038377062854404405 0.03625658056813605 525.6146831535468 -2.720667488826254 0.23580967064176872 LLPGPENHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLPGPENHR 9 0 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 0 ;; 140.88 0.00010804 745560000.0 757160.0 906020.0 811380.0 859910.0 827800.0 917420.0 877110.0 783760.0 1065440.0 857240.0 False True 753083.5346883838 936176.3279993434 925615.2513586128 968774.5178314411 933215.4232449947 854000.9147743854 834680.8384144154 842248.1510526383 802876.5881645578 802530.2092799129 0.9383865254917991 1.1665309507032107 1.153371225974335 1.2071502189315646 1.1628414886491836 1.0641355364561986 1.0400615811875173 1.0494908993000565 1.0004316085309184 1.0 19.61419617440761 2.537290214394435 3.6960150136141197 1.030744029963954 1.1336533515447322 0.32403034935820807 0.06948848085566861 0.28703643648776295 7.794778376985512 0.024171140498999773 0.02186174225032422 344.5801172123639 -2.537290214394435 0.10290932158077815 LLPPAS(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 1 LLPPASP 7 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 LLPPAS(1)P 70.69 0.059102 10586000.0 12789.0 17739.0 14406.0 14158.0 15008.0 13623.0 15798.0 12142.0 13627.0 12512.0 True False 12720.145444991475 18329.431891548054 16434.239580803296 15950.401348347546 16919.17984061472 12681.274075092608 15033.790385779359 13048.097695826704 10268.808442444855 11713.473447937875 1.0859413735411525 1.564816104549663 1.403020176196882 1.3617140482915913 1.4444203861317753 1.082622855761466 1.2834613449715906 1.1139392387596 0.8766663866261336 1.0 13.515881327553876 1.8881608050378433 0.8791995841898391 0.9448334732573308 1.3787460935336082 0.5423701784788535 0.14209578052317925 0.41906206662167894 0.6007953776586988 0.1168883751943532 0.053886422219375396 77.29667364095508 -1.8881608050378433 0.4339126202762774 LLPPVGTGRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLPPVGTGRSPR 12 1 Q9NWZ5;Q9NWZ5-4;Q9NWZ5-3;Q9NWZ5-2 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 LLPPVGT(0.008)GRS(0.992)PR;LLPPVGT(0.02)GRS(0.98)PR 115.09 0.00059779 331650000.0 574750.0 698510.0 672010.0 796660.0 649060.0 675480.0 743970.0 614760.0 790130.0 793490.0 True False 571655.609860728 721759.4830917892 766623.16678437 897517.0743166103 731713.9437199761 628785.6575088862 707981.3288586063 660636.5128880263 595413.0486995635 742848.788859032 0.7695450520135522 0.9716102306639893 1.0320043301973392 1.208209648823873 0.9850106168226265 0.8464517502608581 0.9530625067667138 0.8893283839133959 0.80152657933801 1.0 19.50270904621724 2.8744316056640615 6.481495348347843 0.896315940428355 1.0080146104673195 0.15014520008471222 0.11155214874449576 0.4360156873801077 21.219723026752856 0.03537930242967548 0.03763921325702374 748.9134075102244 -2.8744316056640615 0.1116986700389645 LLPPYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLPPYLR 7 0 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ; 100.36 0.022917 415520000.0 241990.0 323690.0 308730.0 303740.0 286110.0 323040.0 287380.0 246580.0 333940.0 290040.0 False True 240687.15272761649 334463.8259752632 352196.5004707347 342193.45285683643 322544.41259316925 300709.00515436474 273478.33150178957 264981.051707869 251644.96156674475 271529.3988842631 0.886412866218612 1.2317775804373408 1.2970842270411214 1.2602445785352812 1.1878802587069064 1.1074638930075456 1.0071776118001763 0.9758834689602606 0.926768749906179 1.0 18.050748883620624 2.3262244024742116 2.042608474304669 0.9670029412953818 1.1875561868590225 0.4290183592991299 0.10629762802130345 0.299449834676499 2.555889565505393 0.04872487552832331 0.03493680307819172 211.94559875504316 -2.3262244024742116 0.22055324556364075 LLPQGTVIFEDISIEHFEGTVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLPQGTVIFEDISIEHFEGTVTK 23 0 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 129.84 3.6927e-05 21744000.0 16739.0 18282.0 23996.0 21016.0 19669.0 23748.0 24248.0 24772.0 27432.0 22740.0 False True 16648.87908387774 18890.50531829762 27374.428223029 23676.623445180983 22173.730562703284 22106.3566567789 23075.03160364463 26620.612429667184 20671.751169967494 21288.713731306514 0.7820519029007572 0.887348364805988 1.2858657675861846 1.1121678718598618 1.0415721138706135 1.0384073427728977 1.083909149931929 1.2504565924299949 0.9710192654602832 1.0 14.377801164026133 4.41394810511446 6.988275613120256 1.1094563385406973 0.8073379055310351 0.5513037227867359 0.09656096792401453 0.12533219536415202 11.059470485772538 0.023486533886471414 0.06576135794018438 25938.693959468095 -4.41394810511446 -0.3021184330096621 LLPQLTYLDGYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLPQLTYLDGYDR 13 0 Q92688;Q92688-2;P39687;H0YN26 Q92688;P39687 ANP32B;ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ; 134.75 0.00021381 982070000.0 181216.0 202554.0 186378.0 182187.0 199827.0 187008.0 172843.0 193185.0 208815.0 183114.0 False True 180240.35319099028 209295.88744352153 212618.4023733833 205251.85551994608 225273.78398257712 174080.57712948095 164481.92376561987 207601.44567355313 157355.3412276453 171427.50774821738 1.0514085840629306 1.220900252198282 1.2402817095472487 1.1973099196040808 1.3141052269945264 1.0154763340849606 0.9594838420401073 1.2110159472099769 0.9179118526226231 1.0 17.387239101435423 2.720228811517207 24.916114188363764 1.043246076563588 1.207250501192143 0.4754308609894511 0.09518073846005021 786.6877003547505 1069243.8184786246 0.03093125113952292 0.0292137894129178 525.0840321033434 -2.720228811517207 0.16400442462855502 LLPQLTYLDGYDRDDK ddPTM_BT-474_Trastuzumab_2h_R1 6 LLPQLTYLDGYDRDDK 16 1 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ;;;;; 232.15 6.2108e-16 6729420000.0 2416842.0 2075908.0 1830569.0 1650358.0 1764258.0 2015025.0 1844147.0 1982833.0 2884717.0 2058794.0 False True 2403829.99120839 2145003.342867113 2088297.2036090167 1859293.1535849818 1988925.798723565 1875731.0646086368 1754938.564284332 2130802.0670819595 2173817.1485773977 1927400.004297779 1.2471879142099471 1.1128999367459351 1.0834788829264625 0.9646638733210905 1.0319216531537792 0.9731924148729225 0.9105211997359725 1.105531836842704 1.1278495090433485 1.0 20.878224582748057 4.649394917204156 1.4055418454547008 1.0192515402924383 1.3133463360126265 0.5615668439333705 0.062199057472096676 0.8213582110242322 1.6655368904187138 0.01823816792019184 0.32574679308585397 44606.16815104985 -4.649394917204156 0.29409479572018826 LLPS(ph)PVTCTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLPSPVTCTPK 11 0 H0YCH4;Q9BU19-2;Q9BU19;Q9BU19-5 H0YCH4 ZNF692 Zinc finger protein 692 1 LLPS(0.999)PVT(0.001)CTPK;LLPS(0.969)PVT(0.031)CT(0.001)PK;LLPS(0.998)PVT(0.002)CTPK;LLPS(0.982)PVT(0.017)CT(0.001)PK 122.34 0.00041196 1944350000.0 3079300.0 3244250.0 2836560.0 2716060.0 2733730.0 3339380.0 3170740.0 2986110.0 4060540.0 3230430.0 True False 3062721.3909423933 3352232.900059463 3235922.9921784955 3059912.9175160937 3081854.3114128304 3108536.520654977 3017359.1927969404 3208948.69135934 3059874.3254483785 3024261.1916897297 1.012717221435221 1.108446885894299 1.069987936581134 1.0117885736603474 1.0190436989640177 1.0278664188122457 0.9977177900798532 1.0610686339450797 1.0117758128353824 1.0 21.528151313275657 3.7456128555948416 24.20335347541361 1.0224592756042334 1.0681903078782278 0.35269105411793567 0.027526775369824553 364.75110487281535 1251823.7936542877 0.006842294671691434 0.01199410612446027 5566.892765225821 -3.7456128555948416 0.04573103227399433 LLPSAPQTLPDGPLAS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 10 LLPSAPQTLPDGPLASPAR 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR 311.54 1.611599999999999e-61 23961370000.0 4932547.0 5857069.0 5785186.0 5729356.0 5213690.0 4956300.0 4730103.0 4535852.0 4554420.0 4597353.0 True False 4905990.715009494 6052018.000992028 6599689.903061847 6454691.882155894 5877622.51753829 4613682.646875248 4501289.847141795 4874340.308829764 3432044.2171013183 4303945.995548071 1.1398820338554823 1.406155655124886 1.5334044409219945 1.4997148869508394 1.3656357499880347 1.071965738335835 1.0458518419603435 1.1325282226755862 0.797418048611987 1.0 22.037228544885117 2.7282319259467003 3.4224632873820657 1.0236063959289907 1.4092083543525131 0.6923350869653697 0.12664477288038753 0.14721699192213653 3.6742044552131374 0.04323671841848403 0.042887723012378705 534.8499086279279 -2.7282319259467003 0.3856019584235224 LLPYPTLASPAS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 6 LLPYPTLASPASD 13 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 LLPYPTLAS(0.005)PAS(0.995)D;LLPYPTLAS(0.002)PAS(0.998)D;LLPYPTLAS(0.002)PAS(0.998)D;LLPYPTLAS(0.004)PAS(0.996)D;LLPYPTLASPAS(1)D;LLPYPTLASPAS(1)D 212.09 1.7492000000000002e-08 159361200.0 277199.0 328240.0 287959.0 306847.0 300767.0 284693.0 300295.0 273279.0 323115.0 296681.0 True False 275706.5913837043 339165.26997473027 328501.1242155027 345693.7987382679 339067.8946643234 265012.84300523694 285768.58361169836 293672.4666626439 243487.63776917677 277746.5645786171 0.9926552711893745 1.221132187500841 1.1827369483899388 1.2446375322868057 1.2207815969883908 0.9541534506729215 1.028882513975472 1.0573396906211558 0.8766540034026479 1.0 18.083409541600975 2.7388058641473862 24.99997042379043 0.9965423287592503 1.1796854076111285 0.581141923399619 0.07971153831005992 16.768609686107848 1709425.636941234 0.024959301509803907 0.024989530911970974 548.0319320367585 -2.7388058641473862 0.1831430788518782 LLQAFLER ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQAFLER 8 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ; 95.099 0.02301 186877000.0 433250.0 602720.0 671910.0 567630.0 392680.0 454970.0 517660.0 329520.0 774100.0 471040.0 False True 430917.43013859977 622781.1708480663 766509.0876535847 639491.8997995856 442685.47040329117 423518.99478417996 492618.80814676185 354110.4556686557 583333.4274085686 440977.8239223664 0.9771861684692386 1.4122732188857328 1.7382032521175659 1.4501679338690903 1.0038724089699924 0.9604088274033933 1.1171056262309615 0.8030119349743001 1.322818055157494 1.0 18.750346581190897 3.236711170220784 24.988307272124406 1.012056667121798 1.4202834872200962 0.4027733214457345 0.21273292087782503 44.11471660012192 596047.634888224 0.06117648999507078 0.07676206336585983 1724.6904962053886 -3.236711170220784 0.40822682009829814 LLQAGEENQVLELLIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLQAGEENQVLELLIHR 17 0 Q5T911;Q9NPJ6-2;Q9NPJ6 Q5T911 MED4 Mediator of RNA polymerase II transcription subunit 4 0 119.45 0.00011964 14112000.0 12640.0 15543.0 12902.0 16223.0 16258.0 15276.0 14291.0 11819.0 17933.0 17110.0 False True 12571.947644436024 16060.339359058087 14718.489453805647 18276.830136618337 18328.359931284274 14220.006075836049 13599.689733078427 12700.993795665934 13513.652439888718 16018.025151392012 0.7848625236640664 1.0026416619568361 0.9188704172141076 1.1410164464019479 1.1442334344000882 0.8877502651817406 0.8490241215470045 0.7929188321047294 0.843652841855748 1.0 13.967408669623298 2.49855676204069 22.70624036654092 0.8500231235362669 1.0034693257513778 0.2339156666719382 0.10930502322700647 296.3610031312326 313929.98226691165 0.03647567721578355 0.03401173965987923 315.17862899533446 -2.49855676204069 0.15344620221511096 LLQAMEPVHVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQAMEPVHVAR 12 0 Q16401-2;Q16401 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ; 145.81 6.4208e-05 1549100000.0 1413410.0 1749020.0 1667720.0 1675320.0 1395640.0 1585980.0 1574220.0 1374200.0 1905810.0 1555430.0 False True 1405800.3576046154 1807235.0733950818 1902520.4799179018 1887415.3402255725 1573366.481393626 1476344.9355953443 1498068.9644956077 1476749.782046208 1436148.6620456304 1456161.1257293809 0.9654153876003659 1.2410955363815597 1.3065315687266013 1.296158307536317 1.080489276628325 1.0138609728754113 1.0287796714427708 1.0141389959895506 0.9862566969203176 1.0 20.473738569386576 3.051007783318537 5.198045642925618 1.0143422726749052 1.2119358378208824 0.5114852752093053 0.08892856093534875 0.15922983159307594 9.416956097057014 0.0268131761104879 0.03194055639366786 1124.625129040366 -3.051007783318537 0.19759356514597726 LLQDFFNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQDFFNGK 9 0 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89;P54652;P17066 P11142;P54652;P17066 HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 0 ; 200.54 5.3381e-05 2251400000.0 2781300.0 3043800.0 2851300.0 2423200.0 2453600.0 2766800.0 2948300.0 2628800.0 4055300.0 3088900.0 False True 2766325.789831481 3145111.0429840465 3252738.2560561183 2729976.871543708 2766051.4163734214 2575537.6283466327 2805679.465400262 2824974.404775925 3055925.653235971 2891763.757459659 0.9566223321996495 1.0876099525318577 1.1248284883802424 0.944052523136234 0.9565274511923917 0.890645932504935 0.9702312155212084 0.9769035930022144 1.0567687783460307 1.0 21.4635182655057 3.7211633157380866 24.901641668472795 0.9665449078492128 1.0594792327977207 0.3268778352525623 0.056025710142654714 806.6501620850084 1154599.9010171436 0.015090491938279478 0.02343456458167146 5262.151115310136 -3.7211633157380866 0.09293432494850795 LLQDFFNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQDFFNGR 9 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ; 186.76 9.6111e-05 5188500000.0 1256700.0 1549100.0 1460930.0 1307930.0 1278800.0 1230560.0 1281520.0 1255620.0 1758160.0 1426150.0 False True 1249934.0668324968 1600660.8570492766 1666616.245368803 1473513.803894915 1441647.5999585623 1145494.283626658 1219527.9817181914 1349320.7403091681 1324885.0261369974 1335131.8860115567 0.9361877129355576 1.1988784582405079 1.2482783632315833 1.1036466279722723 1.0797791701801087 0.8579633934506622 0.9134138690682393 1.0106273053967707 0.9923252077327208 1.0 20.34855082951184 2.943664628044601 5.115132595108378 0.9565546867136782 1.1320960249553098 0.458820698333707 0.08660140680093946 0.18755663067821682 10.43575614120541 0.02724711904439676 0.029579059511822763 878.3439779212637 -2.943664628044601 0.17554133824163165 LLQDHPWLLSQNLVVKPDQLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQDHPWLLSQNLVVKPDQLIK 22 1 P53396;P53396-2;P53396-3;K7ESG8 P53396 ACLY ATP-citrate synthase 0 ; 293.67 1.1054999999999999e-55 1169260000.0 1953220.0 1847890.0 1555850.0 1484640.0 1547460.0 2109800.0 2098390.0 1972970.0 2654010.0 2105760.0 False True 1942704.0805431446 1909395.9015769048 1774900.1563093706 1672595.2717764294 1744519.8584859858 1963954.4919349924 1996882.8590717523 2120203.0399386585 1999964.7974119815 1971368.593968161 0.9854595870540285 0.9685636199232983 0.9003390648202833 0.8484437039801208 0.8849282999758294 0.9962391091874683 1.0129424122823392 1.0754980303662591 1.0145057619013091 1.0 20.91076611687427 2.5250158922155284 3.2860674914513055 1.0349079568149915 0.9159704288468956 0.6020964020945432 0.04166734169545095 0.1748449054191749 3.799043762161393 0.016391443101918243 0.014605178593371236 334.97769683222987 -2.5250158922155284 -0.11893752796809587 LLQETELVEPLT(ph)PSGAMPNQAQMR ddPTM_BT-474_Trastuzumab_2h_R1 9 LLQETELVEPLTPSGAMPNQAQMR 24 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9;P04626-6;J3KTI5;J3QRJ7 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 LLQETELVEPLT(0.957)PS(0.043)GAMPNQAQMR;LLQETELVEPLT(0.989)PS(0.011)GAMPNQAQMR;LLQETELVEPLT(0.994)PS(0.006)GAMPNQAQMR;LLQETELVEPLT(0.997)PS(0.003)GAMPNQAQMR;LLQETELVEPLT(0.999)PS(0.001)GAMPNQAQMR;LLQETELVEPLT(0.998)PS(0.002)GAMPNQAQMR;LLQETELVEPLT(0.993)PS(0.007)GAMPNQAQMR;LLQETELVEPLT(1)PSGAMPNQAQMR;LLQETELVEPLT(0.995)PS(0.005)GAMPNQAQMR 230.72 6.458399999999998e-33 1417679000.0 876192.0 1159119.0 1547457.0 1169693.0 1614581.0 1972596.0 1158453.0 894269.0 1245956.0 1318955.0 True False 871474.6796260831 1197699.575212768 1765325.4948626372 1317776.0138686749 1820188.3199786497 1836235.0815115166 1102414.202669786 961003.8937859702 938906.8387550312 1234778.1626858145 0.7057742888248884 0.9699714583610748 1.429670161175193 1.0672168116435818 1.474101482341967 1.48709714586906 0.8928034492219085 0.7782806036151894 0.7603850368658756 1.0 20.235820443247103 2.0630091485725415 10.361892676292673 0.8250504979507972 1.1972316909258458 0.3188539788373276 0.23701801853805785 0.5015742577533988 79.49742049981577 0.09335206502980535 0.06891787004250076 115.6136596377006 -2.0630091485725415 0.3721811929750486 LLQGRPPLDFYPPGVHPSGLVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLQGRPPLDFYPPGVHPSGLVPR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 0 73.036 0.012077 168840000.0 34362.0 61563.0 67268.0 69252.0 76069.0 66610.0 68568.0 54321.0 63084.0 54340.0 False True 34176.99880997709 63612.087239380635 76738.74969606244 78019.29609943245 85755.93625371286 62005.40748307409 65251.10388480315 58374.70885644892 47537.79348229184 50871.974677185426 0.6718237109302633 1.2504347952490387 1.508468074672114 1.5336400168169961 1.6857206113560175 1.2188519882811168 1.2826532545446154 1.1474826606765915 0.934459371470224 1.0 15.63458347535586 1.561746231015377 1.8080962533097815 0.9618596481222392 1.3406821039579249 0.21374095128055304 0.2568268421825599 0.5026154442885811 3.3167365923533407 0.22134777854988155 0.07647075054344715 36.45408744497219 -1.561746231015377 0.37882245583568563 LLQHGINADDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLQHGINADDKR 12 1 Q96P70 Q96P70 IPO9 Importin-9 0 139.78 3.8377e-05 258270000.0 245330.0 238250.0 217800.0 216890.0 204650.0 286430.0 288820.0 252010.0 346510.0 293200.0 False True 244009.1705387254 246180.00722483383 248464.34684846303 244348.25176176726 230710.9644444168 266629.768283695 274848.6732004553 270816.26588085067 261117.25349611515 274487.7249788512 0.8889620494232515 0.896870733450108 0.905192925722295 0.8901973732362489 0.8405146877230764 0.9713722837851432 1.001314988572374 0.9866243231886475 0.9512893646381957 1.0 18.06638210815506 2.623312148744613 6.197593060260064 0.9846641467580013 0.886779059643345 0.8485753278855042 0.02067956196154003 0.08854835325526667 4.22831352681981 0.006819106835688014 0.006412436587333931 420.06079381012773 -2.623312148744613 -0.09788508711465627 LLQIIDRDGEEEEEEEEPLDESSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQIIDRDGEEEEEEEEPLDESSVK 25 1 A0A087WUB9;Q8WYA6;Q8WYA6-4;A2A2P1 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 0 ; 95.123 0.0092565 169604000.0 46104.8 57477.0 46134.0 47419.6 47234.0 58999.0 57512.0 55423.0 80247.0 68256.0 False True 45856.57687952482 59390.08719941978 52629.266196083525 53422.916497958875 53248.96992214795 54920.53799870723 54729.92484282457 59558.94569229147 60471.20210470913 63899.84364309836 0.717632067077486 0.9294246090981529 0.8236212046156997 0.8360414275243525 0.8333192522279235 0.8594784410656229 0.856495442281662 0.9320671584886462 0.9463435066048156 1.0 15.963524780587093 1.5101017740555358 0.9311071635934108 0.9982192110626383 0.832230972178902 0.5977044964555464 0.04836771288642815 0.33827761741430373 0.5838162846012048 0.04059557969820647 0.015508843858126776 32.36694978609611 -1.5101017740555358 -0.16598823888373637 LLQIIER ddPTM_BT-474_Trastuzumab_2h_R1 1 LLQIIER 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 89.75200000000002 0.041043 22609000.0 34427.0 42266.0 38082.0 39347.0 37565.0 41534.0 34720.0 38133.0 45211.0 38993.0 False True 34241.648857199274 43672.798259663454 43443.61458532217 44328.326165661216 42348.680084800915 38662.852340519436 33040.46095671983 40978.678095450465 34069.35484636193 36504.43335641313 0.9380134331323259 1.1963697075711759 1.1900914653614245 1.2143271950795418 1.1600969030618047 1.0591275849437918 0.9051081723177947 1.1225671604145389 0.9332936225505496 1.0 15.15578406526565 2.5862018804016977 4.2753313494240395 1.007350636319486 1.1491796941813883 0.36711581924532266 0.09083901624014351 0.25986791657053127 7.985605362757195 0.030060661077595134 0.027942151390619663 385.6575877021851 -2.5862018804016977 0.14182905786190236 LLQLS(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 2 LLQLSLER 8 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;D6RCL7 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 LLQLS(1)LER;LLQLS(1)LER 79.65899999999998 0.028809 22110000.0 60538.0 79212.0 76002.0 81541.0 68720.0 63738.0 64764.0 54008.0 75497.0 65691.0 True False 60212.07013440409 81848.52353533487 86702.42097877349 91864.08223941292 77471.0846646484 59331.94208311328 61631.1178974943 58038.35120706706 56891.77595797012 61498.54413910537 0.9790812283004398 1.3309018072070011 1.409828837291802 1.4937602755542123 1.2597222543905149 0.9647698642899353 1.0021557218995145 0.9437353683656057 0.9250914270309382 1.0 15.90826463734842 2.780645074494986 4.343977948918378 0.9634106016358478 1.3189932056019618 0.6258647057073963 0.12651444376207077 0.1397148461686482 5.970882623955912 0.041327485848747215 0.042870670455018536 603.4552562990272 -2.780645074494986 0.35558260396611396 LLQLVEDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LLQLVEDR 8 0 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;;; 233.89 3.5106000000000003e-08 1190907000.0 1117690.0 1464220.0 1266690.0 1381670.0 1273550.0 1293730.0 1258110.0 1169070.0 1481860.0 1376690.0 False True 1111672.4812270338 1512955.6775603204 1445028.941733146 1556589.280334182 1435729.0435777523 1204297.490212841 1197250.4128530764 1256311.9398171732 1116675.4589066799 1288828.4655563931 0.862544947552132 1.1738999548765945 1.1211957062954228 1.207755199340818 1.1139799297945685 0.934412547827255 0.9289447314745782 0.9747704783000875 0.8664267501452227 1.0 20.29762883274536 2.7387223980408626 24.92688805863279 0.9413337075086691 1.1078321199605097 0.4107313269206929 0.09225180368731094 13.089689204770561 2016954.864101022 0.02828701607385655 0.028337799424299728 547.926617098925 -2.7387223980408626 0.1664984124518406 LLQTCFSS(ph)PADDSMDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLQTCFSSPADDSMDR 16 0 Q9NZL4;Q9NZL4-3;Q9NZL4-2 Q9NZL4 HSPBP1 Hsp70-binding protein 1 1 LLQTCFS(0.315)S(0.685)PADDSMDR;LLQTCFS(0.355)S(0.644)PADDSMDR;LLQTCFS(0.009)S(0.991)PADDSMDR;LLQTCFS(0.355)S(0.644)PADDSMDR 345.35 4.8493999999999965e-87 541560000.0 635830.0 732530.0 600960.0 665100.0 633520.0 693880.0 621660.0 595440.0 757130.0 661770.0 True False 632406.7619273547 756911.8182262649 685569.9443620404 749301.5918057607 714195.0168327728 645913.7088178272 591587.9308281802 639874.756383055 570545.4565222187 619535.2720301987 1.0207760404907642 1.2217412831813228 1.10658742982534 1.2094575170035462 1.152791534358289 1.0425777804404697 0.9548898303878067 1.0328302281905668 0.9209248969030579 1.0 19.240826896164194 2.5853000903716015 3.3087268011815354 0.9852083447571417 1.1484596204068631 0.6333501371959227 0.05916024875943562 0.1546000153227904 3.184432638634105 0.019196042658118372 0.01765196768413434 384.85762050010345 -2.5853000903716015 0.16325127564972142 LLQTDDEEEAGLLELLK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLQTDDEEEAGLLELLK 17 0 P55060-3;P55060 P55060-3 CSE1L Exportin-2 0 ;;; 298.54 7.037199999999998e-46 297541000.0 288916.0 282841.0 266206.0 252889.0 262751.0 342472.0 314684.0 313873.0 429575.0 349575.0 False True 287360.50835758494 292255.1917040052 303685.4908959686 284904.72147070686 296210.7824028095 318797.7167323729 299461.53271038085 337295.7970747997 323711.9972600899 327264.824213785 0.8780672015329926 0.8930235395940083 0.927950297211248 0.8705632270597878 0.9051103586045974 0.9741276579242717 0.9150434466331716 1.0306509350191024 0.98914387770751 1.0 18.320099018281347 2.260789197276067 0.9900120078267867 1.0095240309999787 0.8928121100296841 0.7129808261202568 0.028459945628604284 0.27725311435670824 0.5207398126005612 0.019838256108869468 0.011459066818543324 182.30106142027128 -2.260789197276067 -0.11671192097029459 LLREELQLLQEQGSYVGEVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLREELQLLQEQGSYVGEVVR 21 1 P62195-2;P62195;J3QSA9;J3KRP2;J3QQM1;J3QLH6;J3QSE0 P62195-2 PSMC5 26S protease regulatory subunit 8 0 129.32 1.5228e-05 50520000.0 16422.0 19876.0 20442.0 23691.0 20102.0 24641.0 26358.0 19723.0 26453.0 24792.0 False True 16333.585776655726 20537.560644704277 23320.05591495078 26690.278170907044 22661.870546111226 22937.625668674813 25082.96284266189 21194.83041136469 19934.01260203961 23209.753334500936 0.7037380165680651 0.8848676825089525 1.004752423641051 1.1499595788996329 0.9763942864668325 0.988275288327963 1.0807078593711918 0.9131863706564647 0.8588636128419345 1.0 14.502443569832739 4.602847722520413 2.499350303279233 0.9973468797587438 0.6810514847149901 0.5854082966968478 0.07588790716198826 0.28231251655314504 2.6760048391218945 0.020078329646530273 0.16553916806174898 40072.618562563344 -4.602847722520413 -0.3162953950437537 LLRPLS(ph)PVT(ph)PPPPNSGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLRPLSPVTPPPPNSGSK 18 1 E7EWN3;Q9C0A6;Q9C0A6-2;Q9C0A6-3;H0Y3R4;H7C1F2 E7EWN3 SETD5 SET domain-containing protein 5 2 LLRPLS(1)PVT(0.999)PPPPNS(0.001)GSK 116.94 0.00033443 266180000.0 444490.0 407960.0 352510.0 360200.0 371510.0 475010.0 500110.0 445640.0 568750.0 502410.0 True False 442096.91522748116 421538.70198297244 402140.3439281528 405801.28306786186 418819.59638771135 442173.67675326526 475917.7686942727 478895.91971406795 428589.18335954443 470345.7636651583 0.9399402511515175 0.8962315269901487 0.8549887656996922 0.8627722718403263 0.8904504488869411 0.9401034534841715 1.011846614681282 1.0181784480895135 0.9112215235442397 1.0 18.8433621846908 2.5281130867137493 3.055834318402108 0.9907024161096172 0.8860495241796799 0.6240346819553677 0.03506950763081619 0.16225084673176038 3.0250849924135554 0.012955153027624355 0.011506066323405612 337.37514693766536 -2.5281130867137493 -0.10465289192993732 LLRQS(ph)PPLPGREEEPGLGDSGIQSTPGSGHAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLRQSPPLPGREEEPGLGDSGIQSTPGSGHAPR 33 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 LLRQS(1)PPLPGREEEPGLGDSGIQSTPGSGHAPR;LLRQS(1)PPLPGREEEPGLGDSGIQSTPGSGHAPR 171.16 9.895e-15 1146720000.0 88496.0 139427.0 136452.0 139063.0 146988.0 151209.0 128074.0 119995.0 132679.0 169601.0 True False 88019.54736882997 144067.74340959883 155663.2555379543 156668.36154154936 165706.0505338672 140756.27773769942 121878.57132980794 128949.63622226374 99982.03825751379 158776.91897727863 0.5543598398040824 0.9073594848519215 0.9803896973226323 0.986720000304131 1.0436406727200704 0.8865033951051915 0.7676088698209912 0.8121434592185074 0.6297013375843467 1.0 17.276641681015978 2.3179512977405645 5.5313776309531235 0.7889733515905197 0.9103824068302848 0.07240462188534391 0.15044406022471754 0.443940240130054 22.966214503107405 0.05314651421756285 0.04385733724679403 207.94634807129228 -2.3179512977405645 0.12140905523976508 LLS(ph)FQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLSFQR 6 0 Q13946-3;Q13946-2;Q13946;A1E5M1;Q9NP56 Q13946-3;A1E5M1 PDE7A;PDE7B High affinity cAMP-specific 3,5-cyclic phosphodiesterase 7A;cAMP-specific 3,5-cyclic phosphodiesterase 7B 1 LLS(1)FQR;LLS(1)FQR;LLS(1)FQR;LLS(1)FQR 99.136 0.041058 392741000.0 450900.0 568420.0 568825.0 680369.0 589070.0 467926.0 474368.0 409327.0 471351.0 454848.0 True False 448472.40449970006 587339.5160828535 648910.6156844673 766503.6456401944 664084.5728085627 435579.37699932343 451421.0075782617 439873.05926039006 355192.8618298099 425819.21122503525 1.0531990870245005 1.3793166221719824 1.5239110838086014 1.8000682576886264 1.5595458243841653 1.0229209145970874 1.0601236291795593 1.0330042601763396 0.8341400586600095 1.0 18.69988151420791 2.730365005443326 22.56279589072557 1.0012922497758308 1.4806343727389935 0.6239956451317659 0.18329763691887851 114.75326890622321 315918.0773148071 0.06328956165734533 0.060760626273263986 537.4833377392346 -2.730365005443326 0.4793421229631627 LLS(ph)GSESSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLSGSESSSK 10 0 G3XAI9;Q5BKY9-2;Q5BKY9 G3XAI9 FAM133B Protein FAM133B 1 LLS(0.985)GS(0.015)ESSSK 89.301 0.012175 125810000.0 209630.0 166700.0 147150.0 156910.0 170560.0 214000.0 160470.0 195470.0 293210.0 230740.0 True False 208501.3753720826 172248.50872772196 167867.44094927135 176774.78991165533 192279.80501167697 199206.6837018145 152707.4530450698 210056.96397654805 220952.32431270689 216013.9756535472 0.9652216933708324 0.7973952065211825 0.7771137975743967 0.81834885625722 0.890126689395615 0.9221934974305135 0.706933209219707 0.9724230265242038 1.0228612461032616 1.0 17.720765129204317 1.5736194723402277 7.2364943337205005 1.0059971566298984 0.8394240548802356 0.5221263195486178 0.07020251186500981 0.09400838911601841 9.798404333357967 0.03725182755829412 0.01747918478326 37.464459580245226 -1.5736194723402277 -0.16657310174966278 LLS(ph)NELK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLSNELK 7 0 P06753-3;P06753-4 P06753-3 TPM3 Tropomyosin alpha-3 chain 1 LLS(1)NELK 81.33800000000002 0.028818 73918000.0 119650.0 108950.0 91007.0 96437.0 86509.0 162560.0 152310.0 118210.0 187390.0 133770.0 True False 119005.81769436481 112576.33488833415 103819.99455297561 108645.91431209166 97525.40837098466 151322.60982507924 144942.18341929698 127031.43045821723 141210.24539735384 125232.68407374114 0.9502776258016657 0.8989373319032713 0.8290167644402077 0.8675523895033452 0.7787536384156589 1.208331602443141 1.1573830305669264 1.01436323430884 1.1275829983345609 1.0 16.934251610168946 2.7418880253632683 24.9981774317359 1.0997202914492161 0.8649510944362653 0.735660170851022 0.07091646818790058 156.2543043813486 1173910.4901032876 0.02258331813980396 0.02308844659704821 551.9351148797278 -2.7418880253632683 -0.23476919701295085 LLS(ph)PGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLSPGAR 7 0 P21964-2;P21964;E7EMS6;E7EUU8;F8WBW9 P21964-2 COMT Catechol O-methyltransferase 1 LLS(1)PGAR 94.309 0.023213 0.0 180330.0 226710.0 223400.0 221670.0 203910.0 220510.0 216600.0 190210.0 222630.0 200620.0 True False 179359.12331654632 234255.90530091093 254852.77817239042 249733.39927166307 229876.72983074022 205266.66272470623 206122.2305076472 204404.43606680914 167765.8195891612 187816.25984057665 0.9549712227726771 1.247261049175154 1.3569260637429161 1.3296686851481512 1.223944774674278 1.0929120987657934 1.0974674433545273 1.0883212999785694 0.8932443853986083 1.0 17.518962441453635 2.020633599435566 1.0307068584763937 0.9709662829377815 1.233069526215936 0.4391317221396127 0.1115035077773213 0.5099947248808986 0.9992481480079939 0.09133552449365298 0.043525104291179846 104.86573362040265 -2.020633599435566 0.2621032432781544 LLS(ph)PLSSAR ddPTM_BT-474_Trastuzumab_2h_R1 9 LLSPLSSAR 9 0 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 LLS(1)PLSSAR;LLS(1)PLSSAR;LLS(0.999)PLS(0.001)SAR;LLS(0.99)PLS(0.01)SAR;LLS(1)PLSSAR;LLS(1)PLSSAR;LLS(0.987)PLS(0.013)SAR;LLS(1)PLSSAR;LLS(1)PLSSAR 214.81 6.9491e-07 4878264000.0 3902900.0 4877230.0 4267240.0 4430180.0 4062680.0 4362020.0 4343940.0 3816008.0 4837730.0 4518120.0 True False 3881887.2200529505 5039565.652202211 4868030.300485005 4991040.333763412 4580038.216609053 4060483.8244906017 4133807.0267377165 4100777.8942559953 3645536.263760825 4229769.713442857 0.9177537982069608 1.191451543138554 1.1508972427065371 1.1799792120836081 1.0828103010083479 0.959977516408461 0.9773125505154201 0.9695038198469987 0.8618758255738489 1.0 22.012147688386207 2.7972492868447243 3.576398888390422 0.9540549042220956 1.1199089950433485 0.47801677301164947 0.07883429079543415 0.1998677435769838 5.153406806078669 0.02476750781200791 0.025787467804174215 626.9736468935994 -2.7972492868447243 0.1658540908212529 LLS(ph)PQQPALQR ddPTM_BT-474_Trastuzumab_2h_R1 5 LLSPQQPALQR 11 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR 195.16 2.0748e-07 1877720000.0 1157970.0 1337410.0 1229300.0 1213560.0 1075720.0 1175720.0 1301190.0 1173980.0 1347020.0 1165030.0 True False 1151735.6181825611 1381924.8833685822 1402374.754732854 1367196.5715708905 1212706.5657080284 1094445.2437471822 1238246.4686714935 1261588.3489496475 1015064.97014325 1090676.7879676344 1.0559825155247906 1.267034284229757 1.2857839922916459 1.2535304561844784 1.1118844547593096 1.0034551535533913 1.1353010189011543 1.1567022997715846 0.9306744044995408 1.0 20.05679220491718 3.1120133383765154 4.796571309429204 1.0696373582930012 1.223604478676798 0.44747940613931536 0.08684603985428983 0.2150352629881536 8.144326097685843 0.025942905851684378 0.03135826054953988 1294.2355903697373 -3.1120133383765154 0.15396712038379667 LLS(ph)PRPSLLTPTGDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 LLS(1)PRPSLLTPTGDPR;LLS(0.996)PRPS(0.003)LLT(0.001)PTGDPR;LLS(1)PRPSLLTPTGDPR;LLS(0.998)PRPS(0.002)LLTPTGDPR 106.16 0.0007434999999999999 2178000000.0 2214090.0 2793430.0 2516510.0 2731820.0 2431280.0 2583150.0 2774860.0 2381890.0 2908940.0 2637280.0 True False 2202169.585448524 2886407.628885905 2870812.7341029616 3077668.1319001857 2740889.096674427 2404582.920581035 2640629.420805401 2559638.7267923467 2192070.7147989674 2468966.5325109954 0.8919398284467093 1.1690752348717997 1.1627588694704902 1.2465410492098192 1.1101361887991572 0.9739228494667034 1.0695282362210965 1.0367247563251234 0.8878495054242721 1.0 21.235475849827687 2.8197528557671716 5.754116313882285 1.0057654420529756 1.1302519804385267 0.27890843874839855 0.09645639564347762 0.3106429952960156 17.14383157080727 0.029905744254386222 0.031717436147681966 660.3175737329742 -2.8197528557671716 0.12448653838555113 LLS(ph)SNEDDANILSSPTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLSSNEDDANILSSPTDR 18 0 F5GY88;A0A0B4J1W0;O75448-2;O75448;H0YEG1 F5GY88 MED24 Mediator of RNA polymerase II transcription subunit 24 1 LLS(0.977)S(0.023)NEDDANILSSPTDR 178.56 9.2477e-14 251400000.0 181720.0 159610.0 149640.0 184590.0 145880.0 153400.0 146560.0 150750.0 209020.0 177380.0 True False 180741.63971099016 164922.52236371735 170708.01130580346 207959.07507356108 164456.95330149765 142795.81906475837 139470.33288643026 161999.7304929892 157509.8217245046 166059.45653734176 1.088415218740324 0.9931534511955437 1.0279933155593364 1.2523169677289494 0.9903498224716654 0.859907782684137 0.8398819061235913 0.9755525753907328 0.9485146164445348 1.0 17.3413403563323 3.0052913111660176 24.985146779794068 0.9210266157911834 1.0843406621285145 0.5034882110456793 0.07746496865615789 121.57642028133112 574067.0119371554 0.023009529288841816 0.0274187092692908 1012.258217765457 -3.0052913111660176 0.16331404633733115 LLS(ph)WSDNWR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLSWSDNWR 9 0 Q8TCD5;J3KSY6;J3KSX6 Q8TCD5 NT5C 5(3)-deoxyribonucleotidase, cytosolic type 1 LLS(0.977)WS(0.023)DNWR;LLS(0.995)WS(0.005)DNWR;LLS(0.981)WS(0.019)DNWR;LLS(0.999)WS(0.001)DNWR 163.46 6.6083e-05 516403000.0 422851.0 475852.0 410873.0 454307.0 432795.0 460273.0 464097.0 408263.0 438860.0 424684.0 True False 420574.4171991627 491690.4461613921 468720.3470278626 511822.21961885405 487908.877873058 428455.41087609914 441646.8550872929 438729.6581775079 330708.8334227159 397580.3035297355 1.0578351429014075 1.2367072558578547 1.1789325146807894 1.2873429973136843 1.2271957980347152 1.077657537539594 1.1108368577777437 1.103499479935114 0.8318038657515684 1.0 18.600886760753916 1.5962607005490068 1.3786248936502132 0.9266113955491285 1.1878558063622477 0.5750550148057871 0.08227132647161176 0.27828114076668864 1.0199615821735395 0.06971849080292396 0.02471747942125581 39.46941600389616 -1.5962607005490068 0.2612444108131192 LLSAEFLEQHYDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LLSAEFLEQHYDR 13 0 Q9Y376 Q9Y376 CAB39 Calcium-binding protein 39 0 ;;;; 224.42 1.4145e-11 1875870000.0 1825148.0 2243568.0 2089265.0 2154622.0 1960961.0 2109424.0 2086874.0 1847972.0 2343041.0 2182356.0 False True 1815321.6059610043 2318243.8046145057 2383415.351783074 2427396.9242816316 2210677.759823542 1963604.48392998 1985923.9319871464 1985877.0544516752 1765629.940690865 2043076.1716710292 0.8885237031942158 1.1346830024053471 1.1665817382783539 1.1881088712890557 1.0820339400343708 0.9611019457605199 0.9720263784207624 0.9720034338354742 0.864201719530975 1.0 20.96231156215864 2.7665628304741854 4.1994396561110205 0.9543160568312048 1.1057616587908663 0.4047940653719433 0.0833411277939322 0.21203621005646706 8.812944653987277 0.02692723862858778 0.02761072299167934 584.2017189103314 -2.7665628304741854 0.1514456019596615 LLSDATVEKDESHAGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LLSDATVEKDESHAGK 16 1 Q14320 Q14320 FAM50A Protein FAM50A 0 ;;; 247.5 1.6100000000000002e-20 3130330000.0 4528350.0 3667500.0 3542090.0 3236230.0 3477770.0 4861760.0 4818280.0 4412540.0 7223300.0 5016030.0 False True 4503969.866746984 3789570.5204494298 4040785.483601796 3645936.3861818607 3920643.3951422316 4525677.974552026 4585201.3887829445 4741826.141224107 5443214.502261096 4695902.670960664 0.9591276017280795 0.8069951159516214 0.8604917449822598 0.776407996853988 0.8349072946906215 0.96375037807719 0.9764259845370533 1.009779476595082 1.1591412522073314 1.0 22.162971076243704 2.2614286856986254 1.3125934522740914 1.060203952356451 0.8423827614629409 0.6766121743387787 0.06236932587804876 0.2528189282179357 0.8510434850000448 0.037561435451175115 0.02216717869084653 182.56969317920507 -2.2614286856986254 -0.21782119089351015 LLSDFLDSEVSELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLSDFLDSEVSELR 14 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 0 ; 167.6 8.4285e-06 18679000.0 28265.0 35198.0 30285.0 29971.0 30021.0 33099.0 33966.0 34897.0 33836.0 34684.0 False True 28112.824380536706 36369.5441523597 34548.86475806108 33765.32552700413 33843.996401592136 30810.944036665198 32322.93481727954 37501.19134337543 25497.571179171046 32470.43742553366 0.8657975256726824 1.1200817431476888 1.0640098347086946 1.039878985444533 1.0423018316032404 0.9488921763781509 0.9954573261111004 1.1549333583626364 0.7852549334343311 1.0 14.9868391995722 LLSFS(ph)PEEFPTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLSFSPEEFPTLK 13 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 LLSFS(1)PEEFPTLK;LLSFS(1)PEEFPTLK 244.71 4.8949e-17 478280000.0 445120.0 457700.0 397101.0 413410.0 391820.0 463580.0 470460.0 469020.0 592000.0 506050.0 True False 442723.5233774815 472934.26781450695 453009.3691362322 465747.66361211817 441715.95450091024 431533.80574993993 447702.05246827245 504020.65403530246 446109.5323935831 473753.45574879786 0.9345019397858079 0.9982708560236334 0.9562133291887479 0.9831013535847964 0.932375160837085 0.9108826553420554 0.9450106316599854 1.0638880791669696 0.9416491362336941 1.0 18.853776941358472 LLSHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLSHGK 6 0 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 RPL6 60S ribosomal protein L6 0 ; 132.8 0.014739 3020900000.0 8482700.0 9266800.0 7979700.0 8125000.0 8195200.0 8161600.0 8735300.0 8902600.0 11205900.0 9283700.0 False True 8437030.085716562 9575239.8361011 9103172.399204232 9153624.16692499 9238810.143243982 7597407.802339851 8312740.166913431 9566957.218486803 8444356.096366974 8691206.317824561 0.9707547810035627 1.1017158592200829 1.04740033389091 1.0532052550808821 1.063006653552379 0.8741488263555005 0.9564541287974094 1.1007628709568416 0.9715977031920956 1.0 23.051125002745852 LLSLLEKDEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLSLLEKDEFK 11 1 P35270 P35270 SPR Sepiapterin reductase 0 ; 172.92 1.1662e-05 680270000.0 1156160.0 1035380.0 840420.0 864260.0 919490.0 1399690.0 1363610.0 1327310.0 2361600.0 1411470.0 False True 1149935.3630214506 1069841.9973995741 958743.8309384082 973675.2273854266 1036581.6012557852 1302932.724815853 1297646.9748039388 1426360.612143613 1779615.3238187253 1321388.7761797362 0.8702475635868694 0.8096345426003932 0.7255577224669866 0.736857497912474 0.7844637550597665 0.9860328378017243 0.9820326902999453 1.0794405385123373 1.3467764793369645 1.0 20.333623565013507 2.2482661885667827 1.2208651254810818 1.1552301270584993 0.7785088338126055 0.7192452909034956 0.09553379446777525 0.24133307569080154 0.6964106811426594 0.06095680555068392 0.03505438659017499 177.11942292911746 -2.2482661885667827 -0.37672129324589376 LLSPQMS(ph)GEEEDSDLAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLSPQMSGEEEDSDLAAK 18 0 P42858;A0A3B3IU44 P42858 HTT Huntingtin 1 LLSPQMS(1)GEEEDSDLAAK;LLSPQMS(1)GEEEDSDLAAK 211.16 3.4863e-16 139110000.0 154062.0 121422.0 107064.0 107350.0 120767.0 148460.0 117123.0 120866.0 189018.0 159725.0 True False 153232.5473098975 125463.45786885101 122137.68058302942 120940.4989931564 136145.9616079103 138197.3096372494 111457.3130366904 129885.63466511198 142437.04661143624 149531.21375254774 1.0247529158926971 0.8390452716880548 0.8168039134969465 0.8087976814880619 0.9104852304162523 0.9242037576578873 0.7453782407005397 0.8686188749865542 0.9525572824356838 1.0 17.19008714431576 1.1258871240166612 3.591007559322871 0.9964005404083116 0.8602452912871588 0.2750193408892033 0.07208436372345434 0.26502067931128015 6.0343637954508464 0.0669853338416945 0.017586801141364024 13.362481717487297 -1.1258871240166612 -0.13615524912115284 LLSSNEDDANILSS(ph)PTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLSSNEDDANILSSPTDR 18 0 F5GY88;A0A0B4J1W0;O75448-2;O75448;H0YEG1 F5GY88 MED24 Mediator of RNA polymerase II transcription subunit 24 1 LLSSNEDDANILSS(0.997)PT(0.003)DR;LLSSNEDDANILS(0.132)S(0.779)PT(0.088)DR;LLSSNEDDANILS(0.213)S(0.777)PT(0.01)DR 299.46 1.8624e-49 2179260000.0 839850.0 1030400.0 988330.0 1002800.0 959450.0 1001060.0 982690.0 954930.0 1155830.0 1018170.0 True False 835328.3409161068 1064696.2411100462 1127478.2732816404 1129754.3771805998 1081630.2703943094 931859.0784417688 935153.5304596486 1026191.7256362869 870991.1838285048 953189.5189008065 0.8763507406999038 1.1169827405758996 1.182847955128398 1.1852358369229692 1.1347483883809564 0.9776220362938574 0.9810782765824402 1.0765872948536663 0.91376496127749 1.0 19.862403562439017 2.7378725550266596 24.989329648619275 1.000569073421821 1.1096424193621126 0.26381482234263065 0.0896677874356037 91.28279693781809 3315166.2255531037 0.029057611486777605 0.028942081952472727 546.855463026344 -2.7378725550266596 0.1090733459402915 LLSSS(ph)LTADCSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLSSSLTADCSLR 13 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 LLSS(0.019)S(0.979)LT(0.002)ADCSLR;LLSS(0.077)S(0.921)LT(0.001)ADCSLR;LLSS(0.006)S(0.964)LT(0.03)ADCSLR;LLSS(0.003)S(0.967)LT(0.03)ADCSLR 299.31 8.171499999999998e-41 442804000.0 652027.0 710662.0 629859.0 719678.0 747660.0 706204.0 606571.0 673764.0 907430.0 653640.0 True False 648516.5590790095 734315.9550657497 718537.6723674284 810789.1610097521 842870.0692719887 657385.7797054028 577228.8434037587 724043.690984268 683806.0354390345 611924.1355906425 1.0597989544129474 1.200011426836387 1.1742267228500152 1.324983137373983 1.3774094209544983 1.0742929416746732 0.9433013176488044 1.1832246006858436 1.1174686463036958 1.0 19.222993277695487 2.6280110190328756 16.33636052737334 1.0737122223285287 1.2282485214073422 0.39902235318734325 0.10002281118332026 2.286113895668051 330.79928693297074 0.03411241010203836 0.03216089837636353 424.6303376413224 -2.6280110190328756 0.1545362990788135 LLSSSLTADCSLRS(ph)PSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLSSSLTADCSLRSPSGR 18 1 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 LLSSSLTADCS(0.076)LRS(0.847)PS(0.076)GR;LLSSSLTADCS(0.001)LRS(0.998)PS(0.001)GR;LLSSSLTADCSLRS(0.997)PS(0.003)GR 168.64 1.2245e-11 736320000.0 243640.0 350149.0 336420.0 342926.0 331310.0 330061.0 317841.0 262673.0 350981.0 296484.0 True False 242328.26931094873 361803.49779546 383785.0117849402 386340.396439005 373500.3646717791 307244.6599500209 302465.8165594698 282274.9930864672 264486.43545444583 277562.13728727744 0.8730595306669598 1.3035045101306182 1.3826994399734063 1.3919059718117885 1.3456459455246426 1.106940099801948 1.0897228977827655 1.016979462131436 0.9528909023376693 1.0 18.082451255345028 2.403896432969557 2.139302466097855 1.0089144480417158 1.2742597346453248 0.39212498791779093 0.14283044765966296 0.32489989605056563 3.0404599519451887 0.061622595521495634 0.04786934697779771 253.45241456347668 -2.403896432969557 0.265345286603609 LLSVHDFDFEGDS(ph)DDS(ph)TQPQGHSLHLSSVPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLSVHDFDFEGDSDDSTQPQGHSLHLSSVPEAR 33 0 Q9BV36-2;Q9BV36-5;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36 MLPH Melanophilin 2 LLSVHDFDFEGDS(0.926)DDS(0.745)T(0.244)QPQGHS(0.025)LHLS(0.029)S(0.031)VPEAR 57.919 0.017506 59115000.0 15754.0 22615.0 21636.0 26630.0 25175.0 26161.0 26454.0 23946.0 30566.0 25411.0 True False 15669.182214433944 23367.72660394382 24682.16073651674 30001.355269564603 28380.88702608447 24352.55164636993 25174.318955906285 25732.972115324177 23033.418863415962 23789.24822454837 0.6586665566953375 0.98228100288728 1.037534288748434 1.2611308682972964 1.193013194792677 1.023678908072441 1.0582225515612824 1.0817059821491146 0.9682281106995024 1.0 14.538022060734399 4.761848134599568 2.0323248453886 1.0881650733623267 0.5192101432352487 0.6931098263781201 0.08370670629343735 0.4435271014396205 1.8947098518777623 0.022351585139621016 0.4772455438483005 57789.39323815782 -4.761848134599568 -0.568954930127078 LLSVHDFDFEGDS(ph)DDSTQPQGHSLHLSSVPEAR ddPTM_BT-474_Trastuzumab_2h_R1 9 LLSVHDFDFEGDSDDSTQPQGHSLHLSSVPEAR 33 0 Q9BV36-2;Q9BV36-5;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36 MLPH Melanophilin 1 LLSVHDFDFEGDS(0.999)DDS(0.001)T(0.001)QPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(0.94)DDS(0.026)T(0.033)QPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(1)DDSTQPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(0.999)DDS(0.001)TQPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(0.999)DDSTQPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(1)DDSTQPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(1)DDSTQPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(1)DDSTQPQGHSLHLSSVPEAR;LLSVHDFDFEGDS(0.995)DDS(0.005)TQPQGHSLHLSSVPEAR 376.89 2.734199999999999e-148 7490590000.0 216638.7 566530.0 791151.0 933165.0 879198.0 763277.0 864590.0 493775.0 547545.0 777801.0 True False 215472.34131002234 585386.6085753836 902538.1839922329 1051303.593320438 991158.653885181 710513.4575507938 822766.4786454608 530622.9978386457 412609.87147710146 728161.0742710616 0.295913018319092 0.8039246112701027 1.2394760113972512 1.44377889792154 1.3611804982536284 0.9757641305696899 1.1299237321482827 0.7287165114804237 0.5666464276329957 1.0 19.473898094294892 -1.3236546221572565 4.609317714170837 1.0000216853611286 0.9715770151216856 0.0 0.3433956536021305 8.099074806517454e-05 1.1883758117806931e-05 0.35188521026409963 0.0828769101646931 0.04746192818342007 1.3236546221572565 -0.02844467023944297 LLSVTS(ph)DEGSMNAFTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLSVTSDEGSMNAFTGR 17 0 A0A3B3ISD5;A0A3B3ISF5;A0A3B3IT63;A0A3B3IS73;A0A3B3IRI4;A0A3B3IU93;A0A3B3ITI0;A0A3B3ISI1;Q8WYB5-3;Q8WYB5-2;Q8WYB5 A0A3B3ISD5 KAT6B Histone acetyltransferase KAT6B 1 LLSVT(0.055)S(0.944)DEGSMNAFTGR;LLSVT(0.034)S(0.966)DEGSMNAFTGR 117.48 0.0002257 48078000.0 127323.0 184505.0 195587.0 170162.0 177830.0 206178.0 178867.0 168069.0 182880.0 186257.0 True False 126637.50711491528 190646.13738937225 223123.94952731993 191704.49175289724 200475.59641901118 191925.40015080705 170214.5198717052 180611.16221708924 137811.6744664501 174369.9187973596 0.7262577627399394 1.0933430416454326 1.2796011552119768 1.0994126342152093 1.1497143417953286 1.1006795293278149 0.9761690608430947 1.0357931199531196 0.7903408765511044 1.0 17.411791651334717 1.6830208604874153 1.685496730963818 0.9100909214627119 1.085407790841437 0.15065933477861537 0.1438837901570724 0.6025645529576449 3.434497844857139 0.11199197543602525 0.042501109638603124 48.19709476024909 -1.6830208604874153 0.17531686937872515 LLTQHENIKNEIDNYEEDYQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LLTQHENIKNEIDNYEEDYQK 21 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 261.26 7.4429e-37 127220000.0 98850.0 61169.0 66354.0 61489.0 60645.0 103320.0 82196.0 84136.0 118950.0 83269.0 False True 98317.80258326746 63204.97318755865 75696.06644069281 69273.50109539086 68367.78127892336 96177.73158911889 78219.8654607875 90414.65555395123 89636.36634833904 77954.70112982245 1.2612171063234938 0.8107910398155432 0.9710263184080687 0.8886378895870015 0.8770193495459184 1.233764355390813 1.0034015181524905 1.1598358308548768 1.1498519659393271 1.0 16.250348408145005 2.7489427727711395 24.891576868822327 1.1136251618238446 0.9498072425114201 0.2413735844581577 0.12989719260889787 846.5034616274397 2029520.9564966129 0.03745288803742158 0.03931619385151859 560.9740512948476 -2.7489427727711395 -0.1638179193124245 LLTSHDCEILESEVTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLTSHDCEILESEVTGR 17 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 0 ; 131.82 2.5662e-05 74491000.0 64871.0 72169.0 69774.0 65951.0 60291.0 71091.0 65371.0 56001.0 74051.0 62924.0 False True 64521.74174384564 74571.10153791816 79597.57271351998 74300.38983789166 67968.7014772456 66176.64650021351 62208.75498852909 60180.07898731605 55802.12328256285 58908.13644805325 1.0952942264731564 1.2658879746378826 1.3512152567194384 1.2612924855195802 1.1538083798862353 1.1233872006555465 1.0560299262460358 1.0215919670177382 0.9472736135825759 1.0 15.846179293784457 2.4618718710474337 1.0987563087573262 0.9863081134198456 1.2502922209090033 0.7355135497256421 0.06380184499499168 0.260344781714205 0.6316520608405248 0.04020404587222142 0.028100789106136788 289.6488916832017 -2.4618718710474337 0.2639841074891577 LLVDADNCLHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLVDADNCLHR 11 0 Q9NZB2;Q9NZB2-4;Q9NZB2-6;Q9NZB2-2;Q9NZB2-5 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 0 ;;; 229.16 2.7389e-12 757970000.0 758021.0 1004106.0 915707.0 965140.0 883189.0 871942.0 849913.0 806705.0 957130.0 879133.0 False True 753939.8991600509 1037527.0612151055 1044630.586132073 1087326.6250419663 995657.8840786698 811666.7018706882 808799.461207046 866905.4234649874 721258.1363849154 823025.9792763708 0.9160584454732978 1.2606249223473243 1.269255907390121 1.3211328104101605 1.209752679926437 0.986198154503373 0.9827143754540614 1.0533147741304554 0.8763491731075941 1.0 19.650578445280114 2.7390969657036437 23.35053674770571 0.9890604280683652 1.2100826784160326 0.4850012519567043 0.11038073553828688 16.622085646997203 723675.8602700424 0.03470537067053829 0.03483190557449231 548.3993933636959 -2.7390969657036437 0.22102225034766732 LLVDSQGLSGCS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLVDSQGLSGCSPR 14 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 LLVDSQGLS(0.001)GCS(0.999)PR 144.68 9.2178e-06 467150000.0 265190.0 313320.0 260130.0 279660.0 282930.0 350150.0 336880.0 261580.0 330560.0 315990.0 True False 263762.24650537915 323748.66679406 296754.0429095071 315064.92732581415 318959.4584425058 325944.9546644409 320583.8273934268 281100.42787632614 249097.91727706566 295823.24766735017 0.8916210899083116 1.0943990012512865 1.003146457384592 1.0650445149601664 1.078209576014026 1.1018233260388048 1.0837005878385852 0.9502310250897533 0.8420498363170341 1.0 18.17437590745695 1.600674828232828 4.868184014204355 0.9139839257260347 1.0494776072589471 0.3719803257810821 0.0684466156042151 0.1395590622553613 7.219863428622838 0.036841407950337496 0.016899228669441595 39.8726250006805 -1.600674828232828 0.1354936815329124 LLVDVDESTLSPEEQKER ddPTM_BT-474_Trastuzumab_2h_R1 4 LLVDVDESTLSPEEQKER 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;; 284.15 1.4875999999999995e-39 1314840000.0 1477110.0 1616140.0 1448500.0 1564780.0 1443440.0 1730890.0 1799830.0 1563790.0 2477070.0 1764240.0 False True 1469157.4038823482 1669932.2429227412 1652436.2094122963 1762880.9875594932 1627253.528060829 1611237.6483767936 1712765.346881712 1680487.9505647204 1866629.2895374524 1651644.6927581464 0.8895117759431325 1.0110723270233477 1.000479229375192 1.0673488040672894 0.9852321962439842 0.9755352682338261 1.0370059337771358 1.0174633551229517 1.1301639497416933 1.0 20.655471932154196 4.99820446948897 1.7661345694968869 1.0261432373538204 0.7522816032951636 0.47675714370884903 0.04279713119423687 1.7885361781166034 3.1464005391185994 0.010823121784356545 1.0188577070127522 99587.41729190781 -4.99820446948897 -0.2738616340586568 LLVGNDDVHIIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LLVGNDDVHIIAR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ;;; 166.48 3.3555e-05 1580610000.0 428744.0 545791.0 494211.0 534705.0 518633.0 527172.0 536568.0 472278.0 577231.0 570358.0 False True 426435.6899419365 563957.3234973736 563791.613040981 602398.5981754616 584677.8383713712 490729.8404694063 510612.15595118806 507521.7825390908 434980.1545491215 533957.2641319488 0.7986326220979323 1.0561843828722806 1.0558740388288073 1.1281775502291882 1.094989950781695 0.9190432894796982 0.9562790699762972 0.9504913906624456 0.8146347727964076 1.0 19.026364753255734 2.7205153774996536 23.946057293047623 0.929555133557567 1.0356562010048793 0.21286913354277182 0.09408677218304684 723.5639773121761 960168.1664279868 0.03064519240984755 0.02895946394041534 525.4306192288483 -2.7205153774996536 0.10610106744731229 LLVHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LLVHLK 6 0 Q13435;E9PPJ0 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ; 100.78 0.037275 1612800000.0 2118200.0 2460100.0 2058600.0 2145300.0 1935070.0 2397700.0 2203000.0 2149000.0 3247400.0 2478100.0 False True 2106795.8465541424 2541982.9413381447 2348432.9863280356 2416894.760037438 2181489.6944415197 2231952.6425786926 2096432.4737227457 2309369.292400887 2447121.782930608 2319945.5363918496 0.9081229768138379 1.095708024806317 1.0122793615148793 1.0417894395039855 0.9403193567355609 0.962071138122488 0.9036559008981185 0.9954411671200645 1.0548186345514612 1.0 21.14565950601336 5.033953451547798 16.41806710672995 0.9950732326906893 0.5942765193575243 0.2058979760976708 0.053520081722865605 6177104.815389677 81811072.64482689 0.01330432539717745 71281884.93774112 108131.80475020804 -5.033953451547798 -0.4007967133331649 LLVLDVDYTLFDHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLVLDVDYTLFDHR 14 0 Q8WVY7 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 0 ;; 235.25 3.121e-17 422643500.0 493372.1 604414.0 617693.5 577785.0 579197.8 561208.5 590174.9 498285.8 654861.4 586880.2 False True 490715.839432394 624531.5546140214 704659.3757118501 650932.521758369 652955.2066556773 522413.47733770864 561625.885399943 535470.416640023 493479.58266318747 549425.0031825824 0.8931443538060491 1.136700279376401 1.282539694462505 1.184752273718519 1.188433731398078 0.9508367371553758 1.0222066381156412 0.9746014716080875 0.8981746003634213 1.0 19.06756304037793 2.7348072508711896 24.965240344868885 0.9726262156611468 1.1478168490071587 0.4228803705555524 0.09766019371700345 316.64657088713 2106144.900585687 0.03213019695986554 0.03136671904067696 543.0092789360922 -2.7348072508711896 0.17519063334601193 LLVQTSVQAKPGHVS(ph)PLQLTNIQVPQQALPTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQR 33 1 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 LLVQT(0.014)S(0.014)VQAKPGHVS(0.972)PLQLTNIQVPQQALPTQR 142.17 2.642e-10 566850000.0 132740.0 167540.0 174260.0 192510.0 192930.0 243750.0 211830.0 148630.0 226800.0 227640.0 True False 132025.34258880033 173116.4676199311 198794.29330492747 216881.74626150526 217498.49191429917 226900.13622578167 201582.9736308167 159721.5253278474 170908.17896429822 213111.82030759082 0.6195120589662465 0.8123269153727221 0.932816833050375 1.0176898960764973 1.020583896286827 1.0646999115219875 0.9459023593335453 0.7494728593529745 0.8019648028796394 1.0 17.701251089266517 4.613523123767138 2.2869121179794987 0.933151346182903 0.5848422075765557 0.5295086556640999 0.09385082934307462 0.4314804787675826 3.2260324007894456 0.028302741056362067 0.26948022113706993 41069.85067052896 -4.613523123767138 -0.34830913860634727 LLWHGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLWHGSR 7 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 107.59 0.007442499999999999 1545820000.0 570750.0 1266190.0 1137810.0 1413050.0 1214810.0 1244710.0 936940.0 1001050.0 1223230.0 1316240.0 False True 567677.145416287 1308334.3687219806 1298003.7579781886 1591941.985116719 1369508.8527570085 1158666.1274321743 891616.6327416208 1075753.4342289015 921781.3569422329 1232236.4363102405 0.46068849182557586 1.0617559505378729 1.0533723234681154 1.2919127678804616 1.1114010366856308 0.940295298280286 0.7235759359717052 0.873008947414422 0.748055592076451 1.0 20.232847670133967 2.4614723691118443 9.778236890479132 0.8274655490667238 1.0198370235967895 0.10723884330619637 0.2113955626625813 0.5002739613548943 287.5402495991673 0.0735133336241111 0.062194479755888106 289.38256988659674 -2.4614723691118443 0.19237147453006576 LLYDLADQLHAAVGASR ddPTM_BT-474_Trastuzumab_2h_R1 3 LLYDLADQLHAAVGASR 17 0 H0YL12;P13804-2;P13804;H0YK49;H0YNX6 H0YL12 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial 0 ;; 257.02 4.0833e-27 1034095000.0 482819.0 620991.0 666178.0 618619.0 752111.0 1098142.0 647741.0 514617.0 700387.0 719290.0 False True 480219.55615023396 641660.3100380128 759970.0718770224 696936.1019715643 847887.8777388441 1022230.0282882147 616407.2932190849 553020.3337121774 527786.0085549733 673384.296384849 0.713143384436428 0.9528887345351673 1.1285830037276194 1.0349752818905287 1.2591441206616196 1.5180485107481556 0.915387092524057 0.8212551683802827 0.7837812841618983 1.0 19.361070551717802 2.019847134832088 24.999508206359593 0.8534437937519742 1.1095573280159974 0.22567851515690118 0.20105284631978632 340.1041762588402 428394.47130890936 0.08027338068566355 0.05927891289918583 104.67600393079516 -2.019847134832088 0.25611353426402317 LLYNNVSNFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LLYNNVSNFGR 11 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 192.26 3.4178e-06 2275920000.0 444380.0 555610.0 465800.0 462340.0 426010.0 478810.0 437660.0 410450.0 566340.0 433010.0 False True 441987.50745525904 574103.1429766631 531380.5911938205 520872.1965952114 480259.8483409032 445710.9916975039 416488.7137764402 441079.8632228689 426773.0955671987 405374.9310814875 1.0903178109117255 1.4162275438321523 1.3108373272519993 1.2849146719694586 1.184730015394964 1.099503095833788 1.0274160581792824 1.0880787868310584 1.0527861069963642 1.0 18.628897347842766 2.8948013323085924 1.8708041168258873 1.0529680843641818 1.2899070332053333 0.6422745712022624 0.07861724629848965 0.20400306395088083 1.4236212756411275 0.026726975786974486 0.029299754868730942 784.8765112930184 -2.8948013323085924 0.23693894884115152 LMALSSAIVTMPHFEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LMALSSAIVTMPHFEFR 17 0 Q8TCU6;Q8TCU6-3;Q8TCU6-2;H0YDZ4 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 0 114.59 0.00035627 70877000.0 45107.0 63927.0 55374.0 48525.0 50416.0 56630.0 47825.0 52186.0 66763.0 51532.0 False True 44864.14892385884 66054.77155031245 63170.177880563744 54668.26002461968 56836.178760956296 52715.301392681075 45511.52204075821 56080.384315138566 50310.153228366114 48243.183641235155 0.9299582974767002 1.3692042391218373 1.30941146733463 1.1331810195439256 1.1781183261789632 1.0926994740791411 0.9433772526126966 1.162451979375687 1.0428448006769655 1.0 15.558037495574103 2.8183225604994098 2.1114289231321983 1.0553030712993747 1.206936581381546 0.23544465748256993 0.1210302258753869 0.4680440436522179 4.112973031513612 0.04203396372845149 0.0438637369222627 658.1464763949934 -2.8183225604994098 0.1516335100821713 LMDLLADSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LMDLLADSR 9 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;; 162.97 0.00014743 104921300.0 261970.0 337404.0 330963.0 307920.0 229427.0 250802.0 279465.0 225646.0 406238.0 282153.0 False True 260559.58262760317 348634.28817497485 377559.7136180342 346902.6404282508 258643.16852963212 233464.64806440365 265946.21029002627 242484.85032717133 306126.0882103113 264145.75397666363 0.9864235131738014 1.3198557346705466 1.429361282299432 1.3133000822678316 0.9791683744137805 0.8838478171601784 1.0068161470940082 0.9179963965977437 1.158928673286024 1.0 18.01097469384424 3.2344118341825574 24.969413368400595 0.9786061072737371 1.2782885114164892 0.5256834032165548 0.12545299548400682 74.46940662725581 448193.75560663274 0.03603490144793865 0.04456326583602481 1715.583395387661 -3.2344118341825574 0.29968240414275216 LMDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LMDLLDR 7 0 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3;H0Y8M2 P52306-4 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 0 93.561 0.034535 12346000.0 59287.0 68099.0 55187.0 55454.0 47507.0 61637.0 47082.0 46664.0 74589.0 61703.0 False True 58967.80537940496 70365.63404828518 62956.849905996925 62474.47071417331 53556.73485395014 57376.17926789124 44804.463789293855 50146.304634990745 56207.540391393435 57765.06171340394 1.0208212997671209 1.2181348372377376 1.0898776533530175 1.0815269448535287 0.927147539799524 0.993267860641401 0.775632578938236 0.8681078691439306 0.973036966016967 1.0 15.817909544712078 3.223730472001299 1.6470319485842695 0.8956293289071046 1.1238914776572477 0.5456531901393646 0.07868880879973243 0.23890780990111987 1.3428639887239078 0.02578027954745154 0.03652247916042909 1673.9037102909667 -3.223730472001299 0.22826214875014317 LMDLLGEGLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LMDLLGEGLKR 11 1 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ; 113.61 0.0021946 1439210000.0 1857400.0 2162280.0 1978720.0 1852880.0 1833040.0 2247430.0 2340480.0 2064740.0 2873000.0 2450640.0 False True 1847399.96477654 2234250.182674138 2257306.5766574387 2087454.4180199332 2066466.7787207104 2092070.4539811625 2227262.0408981475 2218821.383337278 2164987.6462276387 2294238.05710154 0.8052346438322449 0.9738528117246958 0.9839025072704273 0.9098682726312849 0.9007202946199107 0.911880285267437 0.9708068585140605 0.9671277906271241 0.9436630342375231 1.0 21.12958366685962 7.999999999999966 0.09689607970111518 1.029987964044598 0.6461289317757225 0.29840589332162193 0.04562222677791808 200.20763061685977 1.3795340820939446 0.6492376210542418 10.214507901487456 99999999.99999222 -7.999999999999966 -0.3838590322688754 LMEDLDR ddPTM_BT-474_Trastuzumab_2h_R1 13 LMEDLDR 7 0 P06703;R4GN98 P06703 S100A6 Protein S100-A6;Protein S100 0 ;;;;;;;;;;;; 257.98 2.2342e-12 81580440000.0 21442580.0 23283360.0 21064700.0 21769510.0 19472820.0 24310820.0 23243800.0 19510210.0 25573960.0 23031670.0 False True 21327135.53177459 24058332.56251168 24030426.662345327 24525527.733921826 21952568.202553242 22630270.234914664 22119408.59406119 20966160.941038948 19271600.23150707 21561769.102195267 0.9891180742494462 1.1157865780160974 1.114492347471559 1.1374543349239747 1.0181246306138296 1.049555355483823 1.0258624183026404 0.9723766561856152 0.8937856694488474 1.0 24.36197221754576 2.072545026498162 1.1664325668415487 0.9457115875696424 1.0842805122665604 0.528463787695954 0.049041036275479996 0.3597859217092128 0.9120828118438649 0.03556315616832986 0.01747751132931206 118.18028323715602 -2.072545026498162 0.13856892469691806 LMEEDELPSWIIKDDAEVER ddPTM_BT-474_Trastuzumab_2h_R1 4 LMEEDELPSWIIKDDAEVER 20 1 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFK5;K7EQF0;A0A2R8Y5K3;F6VDE0;P51531-2;P51531;A0A0U1RQZ9;A0A0U1RRG6 A0A2R8Y4P4;F6VDE0 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 0 ;;; 246.68 4.2481e-30 769874000.0 976670.0 999980.0 878590.0 865710.0 822670.0 1042290.0 1060180.0 986120.0 1441430.0 1130820.0 False True 971411.7172382383 1033263.7297993256 1002287.8351588191 975308.7972367542 927432.1481528867 970238.9455867469 1008895.0431191005 1059709.281815897 1086208.8906724348 1058650.0994562905 0.9175946969986999 0.976020056419016 0.9467602522056926 0.9212758755113334 0.8760516327625192 0.9164868978759361 0.9530014153281207 1.0010005027724935 1.026032011171867 1.0 20.0137944039876 1.801675519129865 2.5864797521770364 1.013229559641281 0.9268097406597462 0.6962411450339282 0.024603474276798626 0.16423543387973275 2.1004701861225774 0.01618512283911141 0.0076795854347177644 63.339629566609545 -1.801675519129865 -0.08641981898153483 LMEEIMSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMEEIMSEK 9 0 P17844;P17844-2;J3KTA4;J3QSF1 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 110.87 0.0051568 34127000.0 55593.0 69878.0 63776.0 65072.0 54873.0 67405.0 73908.0 63228.0 73628.0 67739.0 False True 55293.69346496294 72203.84698785706 72755.10644907065 73310.1085280176 61860.75129224758 62745.451004302784 70332.78768402213 67946.39442527847 55483.36596465325 63415.83902572429 0.8719224457872954 1.1385774925814347 1.1472702650761732 1.1560220546523046 0.9754779285842784 0.9894286974402472 1.109072887224468 1.0714420162085434 0.8749133783777066 1.0 15.952555598935543 3.2249622554303627 24.982486813851093 1.0178476341763418 1.0876589119388544 0.11486970015469466 0.09586863323592855 540.5412210512332 993063.3392282228 0.02815082699028021 0.033816352486336236 1678.6581194654768 -3.2249622554303627 0.06981127776251261 LMELHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMELHFK 7 0 A0A087WUB9;Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 0 104.21 0.0082028 314820000.0 432880.0 481020.0 417340.0 401980.0 375590.0 469120.0 459670.0 421430.0 681520.0 487910.0 False True 430549.42217748926 497030.4599172698 476097.84441569145 452870.62678406236 423419.16020365735 436690.8385896965 437434.0059900749 452879.2465781789 513568.5279001264 456771.1660792337 0.9425932592750483 1.0881388687110178 1.0423115112592403 0.9914606271480483 0.9269831190049528 0.9560385396873892 0.9576655412487125 0.991479498291318 1.1243453309639084 1.0 18.80111205712654 1.3543520046154407 11.09665825581106 1.0619827320432105 0.9878815007463254 0.24090957298675308 0.05333468900239709 0.5034501296287958 46.01959950053063 0.03667308597103296 0.013414621254513027 22.612678317738336 -1.3543520046154407 -0.07410123129688506 LMELHGEGS(ph)SSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMELHGEGSSSGK 13 0 P61247;D6RG13;D6RAT0;H0Y9Y4;D6R9B6 P61247 RPS3A 40S ribosomal protein S3a 1 LMELHGEGS(0.961)S(0.033)S(0.005)GK 132.81 3.2587e-06 0.0 286940.0 241690.0 243740.0 253090.0 237960.0 320330.0 305120.0 254160.0 383620.0 324770.0 True False 285395.146922031 249734.5055453096 278056.47337394074 285131.1680500977 268262.7955005784 298186.3410757112 290360.17992840876 273126.7097983293 289081.991244639 304042.90055041446 0.9386673604460914 0.8213791708117856 0.9145303931470525 0.9377991314183607 0.8823188932053251 0.9807377200253614 0.9549974013626511 0.898316353724698 0.9507934265898283 1.0 18.213915377199783 3.5043101053038956 1.1047054668992102 0.9434364351815819 0.8818374518383428 0.26032796949005876 0.042081256997133616 0.7654380027216015 1.8905629596800466 0.015142509651050563 0.03307258486039292 3193.8175668884955 -3.5043101053038956 -0.0615989833432391 LMELHGEGSSSGK ddPTM_BT-474_Trastuzumab_2h_R1 9 LMELHGEGSSSGK 13 0 P61247;D6RG13;D6RAT0;H0Y9Y4;D6R9B6 P61247 RPS3A 40S ribosomal protein S3a 0 ;;;;;;;; 188.09 6.4015e-06 10064850000.0 12286480.0 13834740.0 13853540.0 13526510.0 12706430.0 15960240.0 15919030.0 14549160.0 18505400.0 16192730.0 False True 12220330.956836265 14295220.957623081 15803998.014871707 15238964.77909569 14324518.543588901 14856946.175163774 15148965.702299882 15634892.198337508 13944992.129655764 15159296.108106362 0.8061278617218579 0.9430003118666427 1.0425284856346724 1.0052554333935548 0.9449329600421837 0.9800551469681427 0.999318543174247 1.0313732304481356 0.9198970737301414 1.0 23.853699430588595 4.676186202322569 3.1990486988530553 0.9926613341998515 0.7910913488690652 0.7134421665713574 0.03501143199670268 0.1465333365253443 2.4221974394927095 0.008524020340257054 0.06697241599801311 47444.53585374352 -4.676186202322569 -0.2015699853307863 LMELLNEKS(ph)PSSQETHDS(ph)PFCLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LMELLNEKSPSSQETHDSPFCLR 23 1 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 2 LMELLNEKS(0.998)PS(0.002)S(0.001)QETHDS(1)PFCLR;LMELLNEKS(0.995)PS(0.003)S(0.003)QETHDS(1)PFCLR 204.86 2.192e-24 437770000.0 381680.0 313950.0 284550.0 298200.0 300940.0 416970.0 378140.0 349260.0 540450.0 395240.0 True False 379625.07728863414 324399.6359632173 324612.166647062 335952.08942486544 339262.9251888728 388145.8453418018 359847.9235649199 375323.5547063448 407263.3391589729 370015.4448180115 1.0259708955536953 0.8767191762029558 0.8772935594802518 0.9079407201234538 0.9168885513839455 1.0489990371421052 0.9725213598635257 1.0143456441147856 1.1006657826385637 1.0 18.49722596598193 2.748386205409218 23.72578652217824 1.0224578675858658 0.9153551063073145 0.5270950086043316 0.05011918397978195 274.160542698355 662012.8962882276 0.015243767836098081 0.015969109756210454 560.2555989898306 -2.748386205409218 -0.10710276127855123 LMELLNEKS(ph)PSSQETHDSPFCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LMELLNEKSPSSQETHDSPFCLR 23 1 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 1 LMELLNEKS(0.964)PS(0.034)S(0.002)QETHDSPFCLR 256.24 8.616999999999999e-44 550340000.0 207660.0 308680.0 314840.0 357500.0 335940.0 407430.0 402000.0 370520.0 467470.0 438170.0 True False 206541.98163319484 318954.2271989996 359166.735361662 402759.4633446989 378719.96772761946 379265.3230870567 382553.7242108692 398170.08386243746 352268.28227707447 410205.61546379 0.5035084207700878 0.7775471987100444 0.8755773246925885 0.9818477567385997 0.9232442303341655 0.9245736986273302 0.9325901689043022 0.9706597590387814 0.8587602631397184 1.0 18.645987716001798 4.7984296970787375 1.384061438258945 0.9406990806092809 0.27560561754201174 0.9234528043394546 0.03834280979449875 0.32722844964423337 0.5061899083590738 0.009881937524176059 0.3154318084655516 62868.00761188282 -4.7984296970787375 -0.6650934630672691 LMFEELR ddPTM_BT-474_Trastuzumab_2h_R1 6 LMFEELR 7 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ;;;;; 117.17 0.01231 633774000.0 1369670.0 1703329.0 1675524.0 1503505.0 1044490.0 1295795.0 1336897.0 1117060.0 2095240.0 1425514.0 False True 1362295.8489046434 1760023.276080875 1911423.2152843152 1693848.5788421612 1177499.6103227383 1206219.7416233283 1272226.1846675086 1200420.6895157446 1578896.1767775863 1334536.4760760644 1.0208007599089386 1.3188274038457672 1.4322749880201626 1.2692411254449798 0.8823285323642398 0.9038492115029889 0.9533094130242384 0.8995038434957879 1.1831045498434125 1.0 20.347907307651468 3.24769846700411 24.89790799693901 0.9567663449506547 1.2767526145789285 0.560852910600482 0.1250022325124432 125.4980631385243 341942.5413653895 0.03482065930525306 0.04648677374398882 1768.8803886926323 -3.24769846700411 0.3199862696282738 LMFNSPGFVEYVVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LMFNSPGFVEYVVDR 15 0 Q16401-2;Q16401 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 ; 162.93 3.6464e-06 218770000.0 176579.0 199767.0 226496.0 188917.0 184608.0 198710.0 189974.0 194769.0 252968.0 195650.0 False True 175628.31828377122 206416.12383329816 258384.66806147608 212833.87282990356 208116.73454265753 184973.645413026 180784.2318488446 209303.65179694223 190627.42599753366 183163.4494956078 0.9588611634439802 1.1269504063268252 1.410678106210661 1.1619887778702662 1.1362350682724398 1.009882953844793 0.9870104125396466 1.1427151670997615 1.040750359978915 1.0 17.482772114922042 2.9386958265295995 3.8652341947871625 1.0492218278344998 1.1775124198565805 0.23144555705587 0.11036454388053742 0.3734744348940785 11.077792796009316 0.03614639590407245 0.03979108472377283 868.352035256527 -2.9386958265295995 0.1282905920220807 LMGEDEKPAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMGEDEKPAAK 11 1 Q9UHV9 Q9UHV9 PFDN2 Prefoldin subunit 2 0 69.01 0.050773 341210000.0 168020.0 181340.0 160160.0 169730.0 165660.0 200470.0 209030.0 180760.0 271400.0 212280.0 False True 167115.39898877672 187375.7922776553 182709.13586432408 191217.8005971912 186755.8190562522 186611.98075562023 198918.42032785562 194249.2290806815 204517.10657367954 198732.10865794847 0.8409078941360731 0.9428561571807236 0.9193740110653048 0.9621887569577865 0.939736514232285 0.939012734357944 1.000937501600347 0.9774426004557585 1.0291095281723601 1.0 17.6004654585455 7.999999999987335 0.2448767416435604 1.0104619036923688 0.12009386378834976 0.7517575516808892 0.024964147491414977 24.443046582171544 0.33017256408275925 0.03188823151092192 8.90734110135237 99999999.99708368 -7.999999999987335 -0.890368039904019 LMHNAS(ph)DS(ph)EVDQDDVVEWK ddPTM_BT-474_Trastuzumab_2h_R1 4 LMHNASDSEVDQDDVVEWK 19 0 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 2 LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK 183.31 1.4454e-14 774020000.0 547940.0 444620.0 358591.0 372419.0 371752.0 509118.0 494968.0 424010.0 667706.0 539697.0 True False 544989.9519218566 459418.90792153386 409077.4958711536 419567.2072150193 419092.4136532653 473923.87099486106 471024.5068786202 455651.7792791531 503158.80310200877 505253.0754021517 1.0786474708502798 0.9092847333108531 0.8096487003974236 0.8304100017225399 0.8294702873796314 0.9379930455992684 0.9322546062757014 0.9018288090903378 0.9958550033595026 1.0 18.94664667254391 1.237101250157827 4.039676204317255 1.002646007580653 0.8977365302314387 0.20876842650680305 0.07257941584864354 0.323004703272353 10.632428472532958 0.06550250089138947 0.01894599457275931 17.262402957442465 -1.237101250157827 -0.10490947734921419 LMHNAS(ph)DSEVDQDDVVEWK ddPTM_BT-474_Trastuzumab_2h_R1 6 LMHNASDSEVDQDDVVEWK 19 0 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 1 LMHNAS(0.987)DS(0.013)EVDQDDVVEWK;LMHNAS(0.999)DS(0.001)EVDQDDVVEWK;LMHNAS(0.996)DS(0.004)EVDQDDVVEWK;LMHNAS(0.943)DS(0.057)EVDQDDVVEWK;LMHNAS(0.587)DS(0.413)EVDQDDVVEWK;LMHNAS(0.983)DS(0.017)EVDQDDVVEWK 284.33 4.3228e-40 7534686000.0 5241516.0 4754993.0 4404882.0 4420781.0 4136193.0 5611451.0 5886650.0 4937862.0 6327920.0 5763827.0 True False 5213296.2602431765 4913260.067551029 5025051.097679297 4980451.421327118 4662912.661413366 5223544.60030481 5601890.250313209 5306350.336395173 4768488.905783787 5395974.6261994345 0.9661454364389914 0.9105417293282572 0.9312592155791157 0.9229938549275604 0.8641465137314056 0.9680446929721624 1.0381609696817289 0.983390527937418 0.8837122551746307 1.0 22.363452133558777 2.500479230586461 24.392524818526617 0.9812221065898884 0.9191123040415489 0.2930093353841562 0.04310097316876068 667.2610135449306 696814.7750131359 0.01406179661668366 0.01317367857143173 316.576906215544 -2.500479230586461 -0.06210980254833953 LMHVAYEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMHVAYEEFEK 11 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 155.11 3.1684000000000004e-05 205970000.0 434120.0 438980.0 421070.0 364910.0 342630.0 403210.0 451500.0 399630.0 638410.0 496810.0 False True 431782.74615526653 453591.1839309865 480352.99599395023 411107.568584935 386261.899572883 375337.0417542453 429659.22010250547 429452.4198800216 481082.409755721 465103.16045955964 0.9283590886130083 0.975248552348691 1.0327880711868793 0.8839062030426269 0.8304865079635771 0.8069974011429676 0.9237933788236729 0.9233487458044529 1.0343563550081503 1.0 18.827191217704716 -0.7688106355424393 10.8861606759884 1.000000000025299 0.9233705994543646 0.08573195723586013 0.07122781873550867 0.0 0.0 0.07350078694177264 0.01732430162302503 0.17029008586165725 0.7688106355424393 -0.07662940057093448 LMIEMDGTENK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMIEMDGTENK 11 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 98.943 0.011968 65104000.0 184070.0 140700.0 111240.0 96518.0 113900.0 193430.0 130470.0 120700.0 183110.0 138700.0 False True 183078.98757209955 145383.11444505388 126901.62508458679 108737.16890378653 128404.4898618082 180058.63938524274 124158.667656199 129707.24690218124 137984.99404829202 129848.04725295582 1.4099479464288363 1.1196403605657184 0.9773086909606802 0.8374185919943534 0.9888827177482659 1.386687310240963 0.9561843268565033 0.9989156529208307 1.062665145664337 1.0 16.98646479234485 4.694381363461256 2.9650338797131774 1.0262013049149328 1.4546574000460621 0.4276493393779923 0.13328923390565955 0.33438094615435926 4.496704330419167 0.03394812616882175 0.32173180092418585 49474.49426241536 -4.694381363461256 0.42845609513112937 LMIWDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LMIWDTR 7 0 Q09028-3;Q09028;Q09028-2;Q09028-4;H0YF10;H0YCT5;H0YDK2;Q16576;E9PC52;Q16576-2;Q5JP01;Q5JP02 Q09028-3;Q16576 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 0 ; 92.467 0.036405 1006750000.0 1324830.0 1403980.0 926990.0 972020.0 704440.0 1134780.0 702370.0 808140.0 1913270.0 1177620.0 False True 1317697.2624824496 1450710.625576167 1057502.134458479 1095077.632336543 794146.258456998 1056335.3295847888 668393.6797860403 868447.5104517697 1441770.2450045093 1102463.2833887937 1.195230065560153 1.3158811249631073 0.959217554355088 0.9933007736733431 0.7203380560810343 0.9581591926923724 0.6062729615189599 0.787733726407924 1.307771666166279 1.0 20.072299178163686 4.0974088328378215 2.7904928356592595 0.8739001036962908 1.2602446323567562 0.3346560295820289 0.184556098858005 0.26202735204899846 4.066484466299145 0.04791580938206616 0.12703141646112048 12514.365437113782 -4.0974088328378215 0.3863445286604654 LMKPPS(ph)PEHQSLDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR ddPTM_BT-474_Trastuzumab_2h_R1 9 LMKPPSPEHQSLDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR 43 1 Q9Y6X9;Q9Y6X9-2;H7C1V1 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 LMKPPS(0.806)PEHQS(0.187)LDT(0.007)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.927)PEHQS(0.071)LDT(0.003)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.951)PEHQS(0.04)LDT(0.01)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.438)PEHQS(0.438)LDT(0.124)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.947)PEHQS(0.05)LDT(0.003)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.333)PEHQS(0.333)LDT(0.333)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.997)PEHQS(0.003)LDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.993)PEHQS(0.007)LDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.986)PEHQS(0.014)LDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR 310.33 3.308499999999998e-114 4536380000.0 1258008.0 1336883.0 1331425.0 1397591.0 1391049.0 1742504.0 1619108.0 1580916.0 2054060.0 1779641.0 True False 1251235.0247058289 1381380.3424921597 1518878.0670464416 1574525.8773017651 1568190.8447566158 1622048.799893206 1540785.5604467941 1698891.9796487857 1547864.4359938565 1666062.787752687 0.7510131274185593 0.8291286214701855 0.9116571585487607 0.9450579467209673 0.9412555494813684 0.9735820353332238 0.9248064189256178 1.0197046546729378 0.9290552837337749 1.0 20.6680113408995 5.2899483743041955 0.6321151344582956 0.9744633121972508 0.39721058216079536 0.8683355726775004 0.027447074536915382 1.9004608506862513 0.3479901380133412 0.01107979645493505 0.92669716632862 194961.28305193727 -5.2899483743041955 -0.5772527300364554 LMLAQDEER ddPTM_BT-474_Trastuzumab_2h_R1 1 LMLAQDEER 9 0 O43592 O43592 XPOT Exportin-T 0 92.062 0.017682 0.0 46840.0 63052.0 55025.0 54805.0 46096.0 47778.0 54401.0 46459.0 65970.0 58270.0 False True 46587.81864441323 65150.647704261115 62772.04171412612 61743.307380716775 51966.052367602366 44475.21931731444 51769.415797998685 49926.006494021785 49712.5774527105 54551.15871254312 0.8540206980736625 1.1943036452730897 1.1507004286545568 1.131842271326859 0.9526113394114514 0.8152937603337859 0.9490067125942676 0.9152144092320104 0.9113019526252507 1.0 15.735322220481207 3.1392749398100888 5.191937551318252 0.9131839078896798 1.09498473369946 0.3986148480885372 0.09548141284251489 0.18628935464838542 7.973411542541047 0.026986788603181704 0.03266901464872632 1378.0816181088978 -3.1392749398100888 0.1818008258097802 LMLDWAEDNLIHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LMLDWAEDNLIHK 13 0 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 ; 184.21 9.6988e-06 863490000.0 884160.0 983110.0 924730.0 906440.0 875300.0 1005200.0 1053520.0 948600.0 1248480.0 1074840.0 False True 879399.7807994098 1015832.2220474563 1054923.946102752 1021195.2110606121 986764.2666904363 935712.8899862794 1002557.2127627729 1019389.348893198 940808.8327748991 1006242.7909831791 0.8739439315040125 1.0095299376554117 1.0483791342962143 1.0148596543611739 0.9806423216471337 0.9299076707640446 0.9963372873292289 1.0130649958715963 0.9349719980161588 1.0 19.940547016700425 4.743303657768204 24.440809758529433 0.993648124753244 0.8739438638466585 0.5146798068929896 0.03434693959905132 305.5584995540292 1574462.369702904 0.00857472621881112 0.06964280304643498 55373.714571441684 -4.743303657768204 -0.11970426090658559 LMLLLEVISGER ddPTM_BT-474_Trastuzumab_2h_R1 1 LMLLLEVISGER 12 0 O43707;P12814-3;P12814;P12814-2;P12814-4;P35609-2;P35609;G3V2N5;A0A494C1A0;Q08043;A0A494C166;A0A494C033;A0A087WSZ2;G3V5M4;A0A494C0Q3 O43707;P12814-3 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 105.86 0.0019057 0.0 48337.0 50980.0 44814.0 47633.0 53538.0 51270.0 47871.0 62820.0 60982.0 45323.0 False True 48076.758962745545 52676.838481939245 51123.421669729185 53663.33291607846 60355.74695541253 47725.82557659823 45555.29684502116 67507.94739349642 45953.80321693489 42430.44733702748 1.1330721682208318 1.2414867574580135 1.2048758586882884 1.2647364400810468 1.4224631306854572 1.1248013766508107 1.0736463955511197 1.5910260586525737 1.0830383863719653 1.0 15.372812268348005 1.0138725539324518 24.999745813481578 0.9999996254595859 1.2675812268584243 0.26856313659576636 0.14467737624320495 227.71630396038046 410366.23274349654 0.14134131552484433 0.03533532892009021 10.324583807984995 -1.0138725539324518 0.26758160139883846 LMLPDS(ph)PLVEEGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LMLPDSPLVEEGR 13 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 LMLPDS(1)PLVEEGR;LMLPDS(1)PLVEEGR;LMLPDS(1)PLVEEGR;LMLPDS(1)PLVEEGR 188.4 6.4428e-06 123614000.0 228190.0 267602.0 228371.0 245216.0 247283.0 231065.0 212222.0 195245.0 284909.0 238722.0 True False 226961.45039429262 276508.97080117476 260523.65176368377 276260.32045743713 278773.02428882796 215092.0204185035 201956.01109323147 209815.1733340214 214696.99453500545 223486.55757981318 1.0155485540253957 1.2372510176699367 1.1657240354182987 1.2361384212505802 1.2473816202089492 0.9624382904626746 0.9036606643382005 0.9388268162799486 0.9606707305352415 1.0 17.76982853226075 2.7019728640326703 8.522321948316206 0.9440235112497325 1.1858037027027686 0.7461366958556147 0.06614823467742244 0.1601924520283809 35.17002220311772 0.02075405057539285 0.019688168008439456 503.46914960571917 -2.7019728640326703 0.2417801914530361 LMLSTSEYSQS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 LMLSTSEYSQSPK 13 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK 323.16 3.068099999999999e-51 664460000.0 719220.0 542830.0 496660.0 468680.0 455430.0 653110.0 667040.0 618160.0 974630.0 639810.0 True False 715347.7994328549 560897.7684023349 566585.4109538911 528014.839945157 513426.3109549014 607962.0429555706 634772.7268597458 664290.2381528771 734445.4958729006 598976.7780311009 1.1942830267715514 0.9364265677311637 0.9459221654908166 0.8815280647119522 0.857172314163142 1.0150010238360245 1.0597618307446075 1.1090417233477203 1.2261668946283686 1.0 19.19214054611733 2.173364890961595 2.225667037023813 1.119270600680497 0.9560023277385347 0.2908905262472373 0.0999599923134472 0.35843057166936554 3.5516465392978747 0.04828375038464141 0.030723035117840133 149.06129535361137 -2.173364890961595 -0.16326827294196244 LMNESLMLVTALNPHIGYDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LMNESLMLVTALNPHIGYDK 20 0 P07954-2;P07954 P07954-2 FH Fumarate hydratase, mitochondrial 0 ; 226.51 4.368e-25 790510000.0 1111430.0 1146480.0 1233550.0 1132620.0 1217290.0 1681100.0 1344040.0 1189350.0 1723350.0 1402940.0 False True 1105446.1843714803 1184639.8937382044 1407223.1177911898 1276009.5758698543 1372304.666056895 1564889.51388374 1279023.6504685972 1278105.3363969282 1298653.4842068923 1313403.1680826375 0.8416655382255992 0.9019621107413596 1.071432711591152 0.9715292355603405 1.0448464716742265 1.1914768838027345 0.9738240941932331 0.9731249074591174 0.9887698733837551 1.0 20.324878409630838 4.3855612238493125 4.651802514317189 1.024575496466831 0.854594189945138 0.4937707464388855 0.06388897748234058 0.1669283087682371 6.1331753418910555 0.016636124994047718 0.050037127943163014 24297.479470334736 -4.3855612238493125 -0.16998130652169297 LMQLVDHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LMQLVDHR 8 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;; 175.51 0.00026568 3365660000.0 2710150.0 3381750.0 3335700.0 3027000.0 2031000.0 2610070.0 2821510.0 2251490.0 4208680.0 2821240.0 False True 2695558.8535259683 3494309.504438954 3805337.565575837 3410217.8896346944 2289635.8113198658 2429642.0043439004 2685022.7820850946 2419507.616634566 3171507.2074226746 2641186.047814916 1.0205865110320553 1.3230077098619528 1.4407684641239256 1.2911691292841743 0.8668968296323193 0.9199056637278437 1.016597367045175 0.9160686043439662 1.2007890205411693 1.0 21.332754499305583 3.2507845080566846 24.98817768023989 0.9770793532959965 1.285026640599555 0.5316542746821454 0.12920093268109994 162.3705714729549 331917.284682053 0.03584928497746051 0.04818608149305329 1781.4945909135397 -3.2507845080566846 0.30794728730355847 LMQQLLESDKYAER ddPTM_BT-474_Trastuzumab_2h_R1 1 LMQQLLESDKYAER 14 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 186.42 9.715100000000002e-07 700110000.0 315930.0 335370.0 283500.0 304760.0 282480.0 368080.0 375950.0 305480.0 471330.0 356940.0 False True 314229.06798312254 346532.5877145541 323414.3357738255 343342.58475225326 318452.1536098646 342635.4959671208 357763.86223153246 328276.4687960091 355177.0369984244 334159.7836082919 0.9403557321890881 1.0370266103618437 0.967843384028934 1.0274802702012928 0.9529936552244118 1.0253642502018265 1.070637101713322 0.9823937077383934 1.0628958193687643 1.0 18.350178588805047 2.531975632087231 23.578428702360423 1.0271927546852349 0.9893903084679962 0.24787688266458396 0.03717789540759752 253.43841166811666 108936.20673112308 0.011192643046207469 0.010552468757120417 340.3890902081256 -2.531975632087231 -0.037802446217238606 LMS(ph)DVEDVSLENVHTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LMSDVEDVSLENVHTR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 LMS(1)DVEDVSLENVHTR;LMS(1)DVEDVSLENVHTR 285.5 4.8522e-36 146568000.0 166775.0 128872.0 102610.0 126870.0 124574.0 139744.0 120035.0 134894.0 154112.0 124385.0 True False 165877.10193044436 133161.426615231 117056.59609789161 142931.72899172574 140437.76049205358 130083.82620199214 114228.44847177036 144960.4752578526 116133.16259499967 116446.64280864378 1.4244902036637452 1.1435402807967125 1.005238049586798 1.2274439652726166 1.2060267011976833 1.1171110052159965 0.9809509807807979 1.2448660756675096 0.9973079497520658 1.0 16.82930952125791 4.729713284675045 4.635454397862907 1.1135255525610763 1.4415035711093418 0.49571523853161814 0.0972674026834459 0.1466632997891981 8.466454216134204 0.022401410133198473 0.15426700043226063 53667.737226996964 -4.729713284675045 0.32797801854826547 LMSELYHPDDHVL ddPTM_BT-474_Trastuzumab_2h_R1 2 LMSELYHPDDHVL 13 0 P49770 P49770 EIF2B2 Translation initiation factor eIF-2B subunit beta 0 ; 133.07 0.00011148 817100000.0 413740.0 528810.0 519670.0 526570.0 506690.0 506820.0 524430.0 122308.0 569220.0 366190.0 False True 411512.46981083526 546411.1211776052 592835.0189473863 593233.708009561 571213.9681130782 471784.72632595163 499061.31738285103 131435.24402743974 428943.35815722175 342819.44068896805 1.2003767026275234 1.5938743732837226 1.7292922996314304 1.7304552706151455 1.6662239660770202 1.3761901173918276 1.4557555906977795 0.38339495497481957 1.2512223848658335 1.0 18.387089398911446 1.891566889613237 7.325770622610281 0.8271437163409435 1.5601231699338947 0.5861406828879008 0.2530819708197988 0.16236689225535936 9.725303173520114 0.10655509400950991 0.06613162426785023 77.9052794266677 -1.891566889613237 0.7329794535929511 LMVHNWEYLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LMVHNWEYLGK 11 0 G3V126;Q9UI12-2;Q9UI12 G3V126 ATP6V1H V-type proton ATPase subunit H 0 124.42 0.0010806 0.0 578810.0 591660.0 596280.0 578770.0 607920.0 649300.0 599990.0 560170.0 833390.0 649660.0 False True 575693.7512718365 611353.0454339772 680231.0410413288 652042.2226573754 685335.0085758605 604415.4192877939 570966.1915156201 601972.7298856241 628012.2013538651 608198.1425980915 0.9465562469701021 1.0051872944274518 1.118436564333341 1.072088480691492 1.1268285129057727 0.9937804425147723 0.9387831884467379 0.9897641701339736 1.0325782954073688 1.0 19.214181884905138 2.5123711074983808 24.13667806941558 0.9849839027046303 1.056180650808174 0.2554941701014223 0.053278397969293935 533.0619494553987 365003.3546462343 0.018219920122262524 0.01716930196795201 325.3652053447501 -2.5123711074983808 0.0711967481035436 LMYEHELEQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LMYEHELEQLR 11 0 Q9NQT8;E7ERX9 Q9NQT8 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein 0 124.1 0.00035609 111820000.0 96120.0 117680.0 119750.0 117900.0 92678.0 122660.0 124110.0 96918.0 129480.0 115750.0 False True 95602.50059993594 121596.90766093765 136609.759114341 132826.1279114405 104479.99395445704 114180.802910582 118106.32515375866 104150.51329963209 97571.38894310987 108362.73590143936 0.8822451722415959 1.1221284387977741 1.2606710044548297 1.2257546545544187 0.9641690299282047 1.0536906618381658 1.0899164198030356 0.9611284952639211 0.9004145948461038 1.0 16.725509198168847 2.002077599931583 1.0611447395040041 0.9434009996450646 1.1095253495656958 0.21445202204292113 0.10862467095899014 0.7685292503443726 1.5946557156913659 0.08928063050591753 0.04182666028811185 100.4795311513529 -2.002077599931583 0.1661243499206312 LMYEHNLQRTACNMTYGSFGGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LMYEHNLQRTACNMTYGSFGGVK 23 1 F8WCG5;A0A5F9ZGY2;A0A5F9ZHP5;A0A5F9ZH74;A0A5F9ZH37;A0A5F9ZHE7;A0A5F9ZH14;A0A5F9ZGX9;Q3SYG4-5;Q3SYG4-6;Q3SYG4-2;Q3SYG4-4;Q3SYG4-7;Q3SYG4-3;Q3SYG4 F8WCG5 BBS9 Protein PTHB1 0 ; 56.055 0.055276 73782000000.0 3841300.0 3737200.0 4063800.0 3743100.0 4095900.0 4449800.0 4785100.0 3057600.0 5404500.0 4415000.0 False True 3820618.8676085467 3861590.4428148977 4635947.716817183 4216976.076211315 4617488.58669869 4142195.79970249 4553626.43214286 3285773.6381781986 4072633.3915897273 4133230.920128334 0.9243661778011472 0.9342789012850504 1.1216280450822818 1.0202614268840273 1.1171620158486864 1.0021689762191845 1.1017111117521285 0.7949649321979275 0.9853389443489586 1.0 21.97883853744444 1.7516676812261929 24.999999999990344 0.908422828812195 1.0330860793575927 0.24109553378585635 0.08336439776811717 4.650828305086327 8884.26196645405 0.037812625890225646 0.0209691294239378 56.45048547633298 -1.7516676812261929 0.12466325054539762 LNAS(ph)PAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNASPAAR 8 0 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 LNAS(1)PAAR;LNAS(1)PAAR 150.86 0.00050602 754640000.0 747170.0 924890.0 794620.0 912300.0 848260.0 825130.0 880900.0 799200.0 977740.0 848120.0 True False 743147.3197383913 955674.4045421886 906495.5890391448 1027797.0864597742 956280.882969072 768090.7052470942 838287.5016352107 858840.3622553698 736789.078044766 793992.2554879363 0.9359629323861617 1.203631896831151 1.1416932379045324 1.294467394808727 1.204395731015542 0.967378082012998 1.0557880078062643 1.0816734751746186 0.9279549932032813 1.0 19.59876540998686 2.742273296778566 24.85544853147987 1.021458297662088 1.1655692306866352 0.37679479236163593 0.09475891348722296 338.9849144689192 2269422.409331101 0.02964419144062282 0.030338689862294273 552.424964924767 -2.742273296778566 0.14411093302454714 LNATNIELATVQPGQNFHMFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNATNIELATVQPGQNFHMFTK 22 0 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 186.55 3.1551e-17 475880000.0 255770.0 262360.0 226960.0 215570.0 255420.0 280530.0 281080.0 240230.0 352350.0 277320.0 False True 254392.96273871843 271092.4940000306 258913.9952283156 242861.13989710985 287946.22300705087 261137.62139658883 267483.0865701267 258157.18246322288 265518.06374810636 259621.20017440265 0.9798620550549335 1.0441847345976447 0.9972760123379293 0.9354441768775659 1.109101347708202 1.0058408990528027 1.0302821433320652 0.9943609469866239 1.0227133360825018 1.0 17.98604867032267 3.2889142539960687 24.999999961715204 1.0238229088061643 0.9936975154825931 0.17799897479491333 0.039014050957842286 237.1592140631191 117745.10128280675 0.010726847291662482 0.014524199924307812 1944.976032563145 -3.2889142539960687 -0.030125393323571226 LNCQVIGASVDSHFCHLAWVNTPK ddPTM_BT-474_Trastuzumab_2h_R1 3 LNCQVIGASVDSHFCHLAWVNTPK 24 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ;; 262.78 2.2712e-44 7983750000.0 2900320.0 3162930.0 3501790.0 3052770.0 3128910.0 3879080.0 3831190.0 1384737.0 4192850.0 3193400.0 False True 2884704.9993758434 3268206.21301844 3994811.593895681 3439250.368992444 3527358.141997457 3610928.329972122 3645860.703132936 1488073.1064920113 3159578.298811544 2989594.4779927083 0.964915148395882 1.0931938217964594 1.3362386180810388 1.1504069847297973 1.1798784644417115 1.2078321513346497 1.2195168040251605 0.49775082120540387 1.0568584876879246 1.0 21.511518373390988 1.7682195117924484 24.99999999998638 0.8020321976616253 1.1701346635834005 0.4173754510233125 0.16633827000454887 17.921439671143244 15114.660900346253 0.07331064857275901 0.040661541041628516 58.64344997572287 -1.7682195117924484 0.3681024659217752 LNCS(ph)TSPEIFR ddPTM_BT-474_Trastuzumab_2h_R1 4 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 LNCS(0.431)T(0.284)S(0.284)PEIFR;LNCS(0.438)T(0.193)S(0.369)PEIFR;LNCS(0.339)T(0.331)S(0.331)PEIFR;LNCS(0.781)T(0.097)S(0.123)PEIFR 173.76 1.2385e-05 745241000.0 1549730.0 1768560.0 1520510.0 1700860.0 1730000.0 1590540.0 1435070.0 1732670.0 2138780.0 1689640.0 True False 1541386.425871191 1827425.4504829021 1734584.5914901565 1916188.7016068953 1950305.2454866369 1480589.713528428 1365650.181600229 1861970.633719986 1611706.3271836955 1581805.728626417 0.9744473660552965 1.1552780581151216 1.0965850989782462 1.2113931988796403 1.2329612987178973 0.9360123602625454 0.8633488657207674 1.1771171389908002 1.0189028260652735 1.0 20.593140993687555 2.733232445597343 24.97998458154966 1.0124422094288072 1.1375139672391554 0.3118373513104027 0.09926455859873043 629.9283409845331 2953278.4249988482 0.03359778991116931 0.03252526126858745 541.0438260608929 -2.733232445597343 0.12507175781034818 LNCSTS(ph)PEIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 LNCS(0.05)T(0.24)S(0.709)PEIFR 152.01 3.477e-05 258890000.0 520950.0 602480.0 499740.0 559530.0 583510.0 553930.0 496360.0 571830.0 739710.0 582130.0 True False 518145.2630829866 622533.1825931486 570099.0481820524 630366.4406300967 657816.539765266 515638.12291096227 472349.17052066367 614502.8582939047 557418.3821061782 544977.9650134331 0.9507636938499244 1.142308905237671 1.0460955942833396 1.156682436902855 1.207051627764531 0.9461632506522577 0.8667307686633179 1.127573769480309 1.0228273763186708 1.0 19.055838373301583 2.7200219392925646 24.821306186791624 1.000495339779105 1.1029885509655695 0.26663928740903986 0.08897207705976642 1154.8766850148693 1546254.1870091816 0.02982644956449258 0.028165234499055645 524.8339726640897 -2.7200219392925646 0.10249321118646448 LNDADPDDKFHCLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LNDADPDDKFHCLR 14 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 ;; 152.34 4.0212e-06 1739660000.0 3399890.0 3066820.0 2784690.0 2768140.0 2683820.0 3357760.0 3260310.0 3114750.0 4364610.0 3415980.0 False True 3381585.370003287 3168897.249768161 3176750.14704062 3118586.240176208 3025588.5687525715 3125645.9545168392 3102596.349706315 3347188.461380025 3289010.348277625 3197969.2318323883 1.057416480541212 0.990909236469555 0.9933648252207823 0.9751770620974064 0.9460968350276949 0.977384623780727 0.9701770482415097 1.046660620765928 1.0284684153740502 1.0 21.608724627812098 1.7426249690730375 17.824506084994994 1.028081458900051 0.9851735693811913 0.2605424005214786 0.028923145605566573 0.14657420466413845 605.0282530541978 0.013759072105995453 0.007614544158798835 55.28724751762106 -1.7426249690730375 -0.04290788951885982 LNDDWAYGNDLDARPWDFQAEECALR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNDDWAYGNDLDARPWDFQAEECALR 26 1 Q5VSL9;Q5VSL9-2 Q5VSL9 STRIP1 Striatin-interacting protein 1 0 ; 167.0 9.9497e-12 230510000.0 63325.0 58609.0 53397.0 52937.0 52851.0 57129.0 66537.0 58112.0 68737.0 57182.0 False True 62984.06523606894 60559.76513511137 60914.83346495582 59638.81877224708 59581.261577580524 53179.8066972007 63318.35111397649 62448.6125267568 51797.68737861096 53532.59580402681 1.1765554105883873 1.131268981553029 1.1379017316469027 1.1140655123576308 1.1129903320155965 0.9934098262651487 1.1827999401668017 1.1665530428483222 0.9675915505430179 1.0 15.70812999040894 -4.999999999999235 0.09422681590490639 0.6079706038369028 1.2078515607669946 0.3230233715655835 0.06308775999655575 277.2929202565473 1.8010323228137493 21.379965364703956 1.3330979604675302 1.0000000000017609e-05 4.999999999999235 0.5998809569300918 LNDS(ph)PTLK ddPTM_BT-474_Trastuzumab_2h_R1 5 LNDSPTLK 8 0 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 LNDS(0.936)PT(0.064)LK;LNDS(0.989)PT(0.011)LK;LNDS(0.872)PT(0.128)LK;LNDS(1)PTLK;LNDS(0.996)PT(0.004)LK 199.59 0.00013289 3172210000.0 3273200.0 2923580.0 2551290.0 2512270.0 2467600.0 3251530.0 3358650.0 3075890.0 4507540.0 3190720.0 True False 3255577.4548867065 3020889.5929585695 2910489.4557897877 2830323.124411152 2781834.2333889217 3026759.3843783233 3196179.2682110327 3305428.530852939 3396717.1649415027 2987085.517887177 1.0898842485063631 1.011316741642972 0.9743575931660747 0.9475199512912152 0.9312871080291556 1.01328179801133 1.0699992514682846 1.1065731165242743 1.1371342215016549 1.0 21.510307110777912 2.2456315597537735 3.2153754124482554 1.0916495514753783 0.9875782227760933 0.38455777942500746 0.05183904102246142 0.22685941034961551 4.8974673474578525 0.021098041113336432 0.015751407229282238 176.04818814584613 -2.2456315597537735 -0.10407132869928504 LNEADHNGDLALDLALSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNEADHNGDLALDLALSR 18 0 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 0 ; 266.78 3.4733e-31 469370000.0 244391.0 281346.0 248985.0 272503.0 271825.0 302927.0 292743.0 246002.0 336442.0 308942.0 False True 243075.2260103928 290710.43153275124 284039.92378358403 307001.85185963823 306440.30251699773 281986.36950345594 278581.90270314045 264359.9184128448 253530.3771918271 289225.0570614469 0.8404362626117509 1.0051357046529643 0.9820723234337153 1.0614635363159928 1.059521970988473 0.9749721285163302 0.9632011331713722 0.9140284078384004 0.8765851056188526 1.0 18.14183302026777 2.032004994991415 2.600612184007566 0.9222540197389018 0.9947639250182844 0.127086502243005 0.06427395110134407 0.4794148385979795 6.227451820608143 0.03258783109765777 0.01894094141049073 107.64775945502612 -2.032004994991415 0.07250990527938261 LNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_BT-474_Trastuzumab_2h_R1 6 LNECISPVANEMNHLPAHSHDLQR 24 0 P23497;P23497-2;P23497-3;P23497-4;P23497-5 P23497 SP100 Nuclear autoantigen Sp-100 1 LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR 232.53 4.7912e-34 3057220000.0 723279.0 775971.0 761460.0 757208.0 787815.0 812091.0 748526.0 204103.0 940748.0 499105.0 True False 719384.9462278505 801798.725650625 868666.9492710319 853070.4551617155 888138.5705046577 755953.0606265888 712316.9377329978 219334.2022740336 708913.2607773616 467251.69159471197 1.539609078294864 1.715988920048886 1.8590985648576364 1.825719351063704 1.9007712256181997 1.6178712120796186 1.5244823090995938 0.46941339372245916 1.5171978476051484 1.0 18.833840361416094 1.9429984650008227 6.899434806120871 0.9463068012957615 1.743850197284832 0.6274194684885017 0.2568511213379892 0.14170824212127045 14.344007221033738 0.10609084311769759 0.0661860771546331 87.69977214193325 -1.9429984650008227 0.7975433959890704 LNEDKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNEDKPK 7 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ; 80.067 0.028198 2373400000.0 3095900.0 2203900.0 2114220.0 1856470.0 1771440.0 2457700.0 2680300.0 2533700.0 3958200.0 2644500.0 False True 3079232.018386827 2277255.479214315 2411883.7988703265 2091498.9116518407 1997022.3838525177 2287804.983803501 2550643.6492596786 2722777.5598679036 2982754.6471626326 2475725.745929643 1.243769437486932 0.9198335005233781 0.9742128355031734 0.844802343349415 0.8066411989033258 0.9240946771123159 1.030260986481725 1.0997896533347606 1.2048001084395552 1.0 21.239420074949948 1.9680147414601485 2.799274302006805 1.1115806441621086 0.9408562312361378 0.23509546354413424 0.11938534558524719 0.3649019010746416 5.336798583046831 0.06221675498274242 0.034607939120979044 92.89979196544252 -1.9680147414601485 -0.17072441292597074 LNEELKVDEETQEVLENLKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNEELKVDEETQEVLENLKDR 21 2 A0A5F9UP49;Q9BRK5;A0A5F9UJX7;Q9BRK5-6;Q9BRK5-2 A0A5F9UP49 SDF4 45 kDa calcium-binding protein 0 ; 236.04 4.5531e-30 143551000.0 285980.0 246000.0 242821.0 204798.0 206152.0 292300.0 304340.0 293900.0 534720.0 263980.0 False True 284440.31545536476 254187.96128986002 277008.0861620324 230725.40580158815 232404.23524136495 272093.9890001883 289617.9115082981 315832.3103939602 402945.4208809061 247132.57039535127 1.1509624773469975 1.028549012715005 1.1208886215155196 0.9336098654761867 0.940403099719213 1.1010041637365116 1.1719131599893156 1.277987397163823 1.630482862846822 1.0 17.914925635048032 1.9581155104518635 2.0308122786774376 1.3381792949249087 1.0368132464992588 0.3500477192393652 0.1565142795861321 0.31695515502734234 2.418340019171164 0.08843354169078241 0.04444902960931309 90.80620177184865 -1.9581155104518635 -0.30136604842564996 LNEHFLNTTDFLDTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNEHFLNTTDFLDTIK 16 0 P48735;P48735-2;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 243.09 5.5659e-20 857100000.0 283990.0 268460.0 272790.0 240630.0 327920.0 559400.0 274580.0 264500.0 452410.0 335370.0 False True 282461.0293942555 277395.52881250274 311196.4608668142 271093.73332765047 369678.66826588404 520729.9946859573 261297.51640253843 284238.3331037856 340919.6174834132 313966.3994752977 0.8996536886313499 0.8835197947171659 0.9911775953951995 0.8634482345267 1.1774465958258367 1.6585532577887443 0.8322467526436593 0.9053144972799834 1.0858474602796981 1.0 18.26025064532388 3.2442393228551394 24.963475824212757 1.097656153455269 0.9134353659202331 0.1757613655253858 0.21159234485363945 296.3819154443913 1302880.5407365868 0.06493666635453363 0.08555977694000719 1754.8472637516052 -3.2442393228551394 -0.1842207875350358 LNEHFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNEHFSR 7 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 0 ; 95.502 0.013419 228998000.0 122367.0 232010.0 222613.0 243860.0 242120.0 218056.0 226060.0 196093.0 246360.0 243790.0 False True 121708.18966825193 239732.31259699343 253954.97541311698 274732.650996471 272952.5468423266 202982.30196861154 215124.6141669378 210726.45540007777 185647.8790548702 228231.11348087998 0.533267300027645 1.0503927748530963 1.1127097070154373 1.2037475820293304 1.1959480137452563 0.8893717375900914 0.9425735645151634 0.923302928273762 0.8134205552584434 1.0 17.800135954077497 LNENHSGELWK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNENHSGELWK 11 0 A0A0A0MTH3;Q13418;Q13418-3 A0A0A0MTH3 ILK Integrin-linked protein kinase 0 96.067 0.007288600000000002 151730000.0 164550.0 160340.0 169150.0 155820.0 152430.0 214060.0 204310.0 173510.0 261330.0 226300.0 False True 163664.08108322357 165676.81997242308 192964.84972184338 175546.79602341566 171841.0569766062 199262.5360430393 194426.74476000632 186458.19726592768 196928.72314259305 211857.34025482237 0.7725202293504116 0.7820206737852308 0.9108244703239686 0.8286085146366309 0.81111684291852 0.9405505412433007 0.9177248450591775 0.8801120463499421 0.929534576926751 1.0 17.69273358928814 7.999999999971357 0.10158241940994536 1.0624023671169707 0.2358546957920049 0.6885289438163256 0.0399958026582964 74.54620746445853 0.53477997142131 0.48517872686846397 8.59786122109748 99999999.99340473 -7.999999999971357 -0.8265476713249658 LNEQAS(ph)EEILK ddPTM_BT-474_Trastuzumab_2h_R1 4 LNEQASEEILK 11 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 1 LNEQAS(1)EEILK;LNEQAS(1)EEILK;LNEQAS(1)EEILK;LNEQAS(1)EEILK 232.28 4.723e-13 2410360000.0 4166550.0 2898940.0 2622020.0 2159610.0 2319880.0 3203950.0 2773290.0 3103220.0 3975180.0 3049020.0 True False 4144117.7577472283 2995429.465453763 2991177.624993601 2433016.404570201 2615302.966993954 2982468.4777870444 2639135.3677033824 3334798.034231867 2995550.1536829774 2854428.93320265 1.4518202606282988 1.049397107285103 1.0479075482315545 0.8523653807840201 0.9162263374550376 1.0448564485508962 0.9245756084535937 1.168289038638018 1.049439388326964 1.0 21.444770713285426 4.764532916021568 3.08827682542906 1.0053694081177555 1.5365646185019233 0.7212243382491798 0.08359418462211568 0.23994740693346736 3.283412170173379 0.022369912179441388 0.3202517810454653 58147.75019466422 -4.764532916021568 0.5311952103841677 LNEQAS(ph)EEILKVEQK ddPTM_BT-474_Trastuzumab_2h_R1 5 LNEQASEEILKVEQK 15 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 1 LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK 269.85 1.9062e-26 1266277000.0 1173193.0 833492.0 779116.0 742727.0 780018.0 1146071.0 1165628.0 1134090.0 1929468.0 1130582.0 True False 1166876.659241997 861234.2773634465 888808.7606023289 836756.1620464849 879348.6687710966 1066845.8093309442 1109242.1205086235 1218721.554592334 1453976.4649465892 1058427.2888200516 1.1024627497490604 0.8136924344832054 0.8397447514728994 0.7905655597554665 0.8308068755024314 1.0079538014560052 1.0480097520399545 1.1514457038905153 1.3737140758790345 1.0 20.013490732706686 2.1819403499101924 1.570661650119361 1.190530368932461 0.8679706501165011 0.5322968471601102 0.12005562208562655 0.27960476855569283 1.3426882211632671 0.06770882938577434 0.038728187056916163 152.03386977718807 -2.1819403499101924 -0.3225597188159598 LNEQASEEILK ddPTM_BT-474_Trastuzumab_2h_R1 4 LNEQASEEILK 11 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 0 ;;; 227.36 9.4535e-12 744170000.0 1025980.0 940580.0 784460.0 660140.0 724520.0 920460.0 892270.0 955550.0 1174740.0 933380.0 False True 1020456.2376770932 971886.6367073826 894905.1493514472 743713.6563143209 816783.3274335142 856830.766729776 849107.4912975928 1026857.9931845823 885241.0677095221 873810.8892931775 1.16782275224624 1.112239099576269 1.0241405323700334 0.8511151158987137 0.9347369521730351 0.9805677375145363 0.9717291254912521 1.1751490005065102 1.0130808376919982 1.0 19.736961558968517 -3.2679225909683467 10.006433430640037 1.001883393783123 1.0260528707261771 0.0 0.09724653500361717 0.0 0.0 0.0 0.023588240661911047 0.0005396067939351056 3.2679225909683467 0.024169476943054047 LNEQASEEILKVEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNEQASEEILKVEQK 15 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105 Q01105-2;Q01105 SET Protein SET 0 ; 180.81 5.598699999999999e-07 1092390000.0 699150.0 644910.0 600860.0 599100.0 634460.0 855550.0 849560.0 740930.0 1400830.0 937400.0 False True 695385.854082867 666375.4394936728 685455.865231255 674945.9985728938 715254.7202609553 796407.8422480709 808463.5371656367 796221.9589663055 1055614.2166603073 877574.3294514827 0.7923953911886981 0.7593378898288681 0.7810801230474584 0.7691040814682452 0.8150360559293213 0.9075104131018236 0.921247933119189 0.9072985982440649 1.202877273449995 1.0 19.74316179950027 2.026842132581657 0.8255431549467476 1.0691775774481136 0.7727832753244408 0.7397026715067094 0.06653636046725571 0.31390704378992096 0.39847006583598255 0.0552226975226634 0.028376962338318597 106.37562691665993 -2.026842132581657 -0.2963943021236728 LNEQHQLILSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNEQHQLILSK 11 0 Q8IYB5-3;Q8IYB5-2;Q8IYB5 Q8IYB5-3 SMAP1 Stromal membrane-associated protein 1 0 96.306 0.007110800000000001 285180000.0 306120.0 327020.0 312550.0 291860.0 314180.0 346300.0 348170.0 294440.0 439300.0 366830.0 False True 304471.88393312966 337904.6630122353 356554.3232666988 328809.4460749197 354188.96070924454 322361.0961025155 331327.6869614379 316412.6079360251 331040.40131841344 343418.5953410362 0.8865911399782239 0.983943990210183 1.0382499028994572 0.9574596441068991 1.031362207854565 0.9386827052343824 0.9647925052876323 0.921361313069863 0.9639559587321401 1.0 18.389608634568827 LNEQYEHASIHLWDLLEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNEQYEHASIHLWDLLEGK 19 0 Q14444-2;Q14444;G3V153 Q14444-2 CAPRIN1 Caprin-1 0 ; 129.32 1.1412e-05 403270000.0 222600.0 423150.0 484850.0 520080.0 531510.0 592370.0 612730.0 259540.0 518910.0 522670.0 False True 221401.54633318493 437234.29195042286 553112.6656082523 585922.0746749968 599194.6479934129 551420.856188989 583089.909044094 278908.1927174156 391031.58353776037 489312.7531196995 0.452474506175448 0.8935681507640232 1.1303867763138917 1.1974387974548948 1.2245637257012862 1.1269292547012282 1.191650749600336 0.569999843533992 0.7991444756848657 1.0 18.90039735913455 -0.9044994262691385 4.623752953657301 1.0000003480046695 0.9595508688284784 0.0023985717897629932 0.2601641089440701 9.98191158004821e-07 2.367332228246447e-07 0.26956498475833907 0.06353652994212396 0.12459498832493575 0.9044994262691385 -0.04044947917619113 LNES(ph)DEQHQENEGTNQLVMGIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNESDEQHQENEGTNQLVMGIQK 23 0 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 LNES(1)DEQHQENEGTNQLVMGIQK 302.75 3.0910999999999996e-62 194940000.0 67647.0 54660.0 48684.0 41783.0 36904.0 69973.0 69688.0 62882.0 70967.0 57690.0 True False 67282.79606828827 56479.32505733224 55538.2840310862 47072.723515892474 41603.50565285485 65135.93120872455 66316.92520598763 67574.57414832605 53478.13375907999 54008.174809106094 1.2457891107429906 1.0457551149795474 1.0283310670539847 0.8715851569187955 0.7703186749025308 1.206038371764088 1.2279053206368715 1.2511915906651336 0.9901859107088963 1.0 15.720890173194938 LNETTDPDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNETTDPDKK 10 1 P49589-3;P49589;B4DKY1;P49589-2 P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic 0 73.499 0.071841 280170000.0 414080.0 312520.0 254970.0 256300.0 257280.0 377530.0 349400.0 369990.0 625520.0 350150.0 False True 411850.63928861334 322922.0392776707 290867.5597610313 288747.5537209692 290043.08298196655 351432.23971002805 332498.18716238224 397600.532571152 471368.9775385703 327803.12722150324 1.256396309515124 0.9851096968317379 0.8873239319784957 0.8808566171055976 0.8848087736087354 1.0720832430392226 1.0143228039972494 1.212924769636152 1.4379636385227548 1.0 18.322470092161048 1.732320758738678 3.3941349042641753 1.2509981322378403 0.9836224551897822 0.31979808956699984 0.14491925923829024 0.21791874705393954 5.4086422639297185 0.08094516648033719 0.03870282359468751 53.9909238375761 -1.732320758738678 -0.2673756770480581 LNFDMTAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNFDMTASPK 10 0 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 LNFDMT(0.001)AS(0.999)PK;LNFDMT(0.02)AS(0.98)PK 113.52 0.0015492 433550000.0 1173210.0 844090.0 773080.0 763530.0 683870.0 1235900.0 1084290.0 897550.0 1577400.0 1088870.0 True False 1166893.5677158854 872185.0253868207 881922.9442681817 860192.819713505 770956.7908849408 1150465.1419956652 1031838.7503099587 964529.7386665498 1188670.9060770893 1019377.384371493 1.1447120424741861 0.8556056262956773 0.8651584366980437 0.8438413809267166 0.7563016432430288 1.1285959053378407 1.012224487348372 0.9461949553268144 1.1660754145629548 1.0 19.959256820796618 2.7295961693900628 24.978627813358724 1.035727574527408 0.8867479331706304 0.33169355283522917 0.1105887378854278 820.0895257113482 2285101.2637371686 0.035669864158311346 0.03406567331113375 536.5326671170332 -2.7295961693900628 -0.14897964135677755 LNFGDDIPSALR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNFGDDIPSALR 12 0 Q9UNE7;Q9UNE7-2;H3BS86;H3BUD0 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 106.38 0.0017938 0.0 84555.0 109040.0 98132.0 100990.0 100210.0 105550.0 104230.0 85053.0 119790.0 104520.0 False True 84099.76527494357 112669.33048392794 111948.13262136537 113775.32364526215 112971.14950879537 98253.57693797437 99187.99670273357 91400.08675038278 90269.3596037623 97849.44411592608 0.8594812779447911 1.1514560098107882 1.1440855247857722 1.1627590189523005 1.1545405344863688 1.0041301493912373 1.0136797158011615 0.9340889728724213 0.9225331877901796 1.0 16.578276034453907 2.392154392725199 2.155813754753063 0.9549712089130922 1.1028698225666418 0.31260660092337367 0.08787750475554147 0.34610005736427363 3.292192008650007 0.03691602423589068 0.028447374528922983 246.6916175956315 -2.392154392725199 0.14789861365354962 LNFSHGTHE ddPTM_BT-474_Trastuzumab_2h_R1 2 LNFSHGTHE 9 0 H3BU13 H3BU13 PKM 0 ; 144.77 9.8763e-05 732220000.0 399220.0 522410.0 404120.0 503190.0 764030.0 666220.0 529570.0 285790.0 453500.0 511300.0 False True 397070.64387751167 539798.1010464864 461016.58332599147 566893.8024067663 861324.6917393977 620165.7795131902 503952.6759461444 307117.1010122153 341741.0015886648 478668.39625404705 0.8295317739480998 1.127707835467783 0.9631230867418974 1.184314249370027 1.7994183415490435 1.2956062785144586 1.0528221204699673 0.6416072241569442 0.7139410169191328 1.0 18.868667030708192 1.9338527678386634 4.514381070878782 0.7581053878332917 1.210773687397141 0.3457793573782594 0.2536253223902534 0.24528253390296112 9.454901983612974 0.12558832745184476 0.07438792534419218 85.87223527552861 -1.9338527678386634 0.45266829956384935 LNFSHGTHEYHAETIK ddPTM_BT-474_Trastuzumab_2h_R1 9 LNFSHGTHEYHAETIK 16 0 P14618;H3BUW1;H3BTJ2;H3BT25;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;; 243.83 2.9357e-20 7697890200.0 2454503.4 2866446.7 3003422.4999999995 2791592.0 2369287.6999999997 3546240.7 3710230.4000000004 520182.91000000003 3990866.3 2079753.4 False True 2441288.626415366 2961854.6456058808 3426278.2817836464 3145007.2609716235 2671002.444726575 3301097.4273616862 3530752.381095475 559001.6001794954 3007370.775233629 1947021.7574455328 1.2538579073807088 1.521223188328309 1.759753463812792 1.6152912770208752 1.371840060087924 1.6954599581325085 1.8134118777017552 0.28710598535524234 1.5446004975205108 1.0 20.892837575202304 1.7586120270507573 24.999999999079947 0.8832624427428083 1.57908094134261 0.43820884590239506 0.3257105640281823 7.116424986381195 8880.745072470258 0.14147976074443797 0.0784591930569896 57.360380960902916 -1.7586120270507573 0.6958184985998016 LNGPGENVS(ph)EDEAQSSNQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNGPGENVSEDEAQSSNQR 19 0 A0A3B3ISF0;Q659C4;Q659C4-9;Q659C4-2;H0Y9K3;D6R9W6;D6RJB0;A0A3B3IT29;A0A3B3ISF8;G3V0E9;Q659C4-3 A0A3B3ISF0 LARP1B La-related protein 1B 1 LNGPGENVS(1)EDEAQSSNQR 458.45 1.7601999999999985e-214 372270000.0 198280.0 196330.0 193450.0 191590.0 182990.0 199480.0 208760.0 214260.0 238690.0 228290.0 True False 197212.48251097873 202864.725366009 220686.07850245692 215845.2743558349 206292.69183329467 185690.41712541092 198661.4812593554 230249.16919023445 179868.04778213575 213720.33675109787 0.9227595534844003 0.9492064650930646 1.0325927885817971 1.0099426083499567 0.9652459610034512 0.868847672375086 0.9295394358783916 1.077338603758548 0.841604736902567 1.0 17.705364669912253 -1.167064172526336 4.559049290548583 1.000003696492911 0.9640201292255606 0.023135885945178902 0.06841621578926735 3.9939539059673194e-06 7.297016741175849e-07 0.06632552308847427 0.015630583544542272 0.06806687738050379 1.167064172526336 -0.035983567267350525 LNGTDPEDVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNGTDPEDVIR 11 0 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 ; 160.61 6.345399999999999e-05 311630000.0 361340.0 440280.0 396270.0 410260.0 376020.0 401600.0 403690.0 386400.0 457120.0 412990.0 False True 359394.5855886482 454934.45364511956 452061.3715594141 462198.87393509457 423903.91815484705 373838.3372647134 384161.972454442 415235.1300994435 344468.90109417966 386632.6246214724 0.929550593255054 1.1766582142169641 1.1692271752855798 1.1954471622450493 1.0963997633926124 0.9669084124256585 0.9936098197366318 1.0739785099769426 0.8909462863653254 1.0 18.560603853821828 2.862707414364075 4.873026089953844 0.9977573313017741 1.1276448015982974 0.3770796081799215 0.08145960433642978 0.2515051289186898 8.94744446328271 0.02512074369022709 0.02679681795304419 728.9662378099293 -2.862707414364075 0.12988747029652326 LNHQEFK ddPTM_BT-474_Trastuzumab_2h_R1 3 LNHQEFK 7 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;; 130.04 0.0099362 135280000.0 1611110.0 1478900.0 1328320.0 1229130.0 1183640.0 1574760.0 1477660.0 1265010.0 2110000.0 1564580.0 False True 1602435.9627711482 1528124.2924860711 1515335.9100355853 1384737.7319744627 1334369.538016073 1465900.5477863061 1406179.9405906273 1359411.4697906224 1590018.7725514537 1464727.1648956693 1.0940166886884273 1.0432825505731078 1.0345516532722465 0.9453895340796086 0.9110021101514277 1.0008010931446885 0.960028580265177 0.9280987629443272 1.085539212119896 1.0 20.482200527821956 4.019144635411984 2.4585859141512785 0.9682188042294314 1.0720249832367807 0.3810105232625949 0.04778783012635589 0.27111769858504003 3.258942935653147 0.012521178421653581 0.03208577081954079 10450.682059206447 -4.019144635411984 0.10380617900734934 LNHS(ph)PPQSSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LNHSPPQSSSR 11 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR 120.54 0.00028208 5105690000.0 391649.0 447367.0 448371.0 425805.0 413098.0 468504.0 422612.0 373102.0 461856.0 441711.0 True False 389540.4053002943 462257.3401559374 511497.7394894035 479711.86934122926 465703.58167632396 436117.42121978855 402168.6430253821 400944.7658135678 348037.77735332854 413520.625812187 0.942009614478616 1.1178580010320591 1.2369340428540456 1.1600675743780313 1.1261919058127887 1.0546449052286562 0.9725479647731992 0.9695883126170086 0.8416455084187277 1.0 18.657599765175156 2.302993037434387 1.7309196718287272 0.9342928113407651 1.1263734974350004 0.5137297674583042 0.0785581610410615 0.29374212608965605 1.7775913920431754 0.0404733976672257 0.026951287714468107 200.90606032922776 -2.302993037434387 0.19208068609423523 LNHVAAGLVS(ph)PSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNHVAAGLVSPSLK 14 0 Q05519-2;Q05519;Q5T757;Q5T760 Q05519-2;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 LNHVAAGLVS(0.996)PS(0.004)LK;LNHVAAGLVS(0.999)PS(0.001)LK 296.47 1.2642e-43 1412500000.0 2922400.0 2702200.0 2515000.0 2524800.0 2396900.0 2970000.0 2830900.0 2324100.0 3630000.0 2847800.0 True False 2906666.1231091633 2792141.093485608 2869090.13922812 2844439.4211264243 2702131.0074606477 2764690.8906279807 2693958.551911812 2497536.1435406734 2735435.1395079503 2666050.9658757574 1.0902515219375664 1.0472947176268372 1.0761572737922762 1.0669111196799905 1.0135331402312628 1.0369985142875247 1.010467761641941 0.9367923477487875 1.0260250739840606 1.0 21.346272929463513 2.7422467651652793 0.9886476931844678 0.9814694559216505 1.0714118556430092 0.5970549330260959 0.026725217894162056 0.3372979046572463 0.6980866314495181 0.015094287467389412 0.014036194141595734 552.3912175978725 -2.7422467651652793 0.08994239972135876 LNIHQKT(ph)HTGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNIHQKTHTGEK 12 1 Q9GZX5 Q9GZX5 ZNF350 Zinc finger protein 350 1 LNIHQKT(0.992)HT(0.008)GEK;LNIHQKT(0.975)HT(0.025)GEK 96.604 0.0079022 954370000.0 1565990.0 809910.0 472130.0 449260.0 454070.0 797130.0 592940.0 608740.0 1657160.0 699870.0 True False 1557558.8838378442 836867.364749066 538601.8001724742 506136.26993633504 511893.12301625387 742026.2793421844 564257.2269492357 654167.2699190868 1248775.122806335 655203.6974111471 2.37721320864351 1.277262884894746 0.8220371806517692 0.7724868951994471 0.7812732514160946 1.132512350394377 0.8611935939597704 0.9984181598850016 1.9059341815995825 1.0 19.321583972779706 4.715372206537245 3.1626488780817676 1.0105013510969778 2.5441991497896383 0.6183742944944244 0.3144242647531522 0.20037963191588012 3.1966509829175815 0.0759269982258028 0.7382032950818518 51924.48604613057 -4.715372206537245 1.5336977986926605 LNINSS(ph)PDEHEPLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNINSSPDEHEPLLR 15 0 Q13873 Q13873 BMPR2 Bone morphogenetic protein receptor type-2 1 LNINS(0.004)S(0.996)PDEHEPLLR 177.12 4.9344e-07 108110000.0 23718.0 30965.0 23116.0 26252.0 28682.0 26494.0 22853.0 24267.0 29950.0 25707.0 True False 23590.30492331754 31995.65130626223 26370.531872126136 29575.50050832178 32334.482688466916 24662.532140167623 21747.51308306214 26077.92676532916 22569.223809438867 24066.35725113003 0.9802191780482218 1.3294762880975632 1.0957425586661194 1.228914712754589 1.343555335402854 1.024772128279181 0.9036478955302215 1.0835842954215549 0.9377914394742534 1.0 14.554730167666646 2.5732040949044706 7.7691041836887536 0.9916163416140862 1.1988751835825504 0.4779710995626336 0.10795142044764934 0.24623727648969473 17.739458914189044 0.03318084128698097 0.03121755654824763 374.2864413208652 -2.5732040949044706 0.20725884196846422 LNIQS(ph)PLTSQENSHNHGDGAEDFK ddPTM_BT-474_Trastuzumab_2h_R1 3 LNIQSPLTSQENSHNHGDGAEDFK 24 0 O75182-2;O75182;O75182-3 O75182-2 SIN3B Paired amphipathic helix protein Sin3b 1 LNIQS(1)PLTSQENSHNHGDGAEDFK;LNIQS(0.996)PLT(0.004)SQENSHNHGDGAEDFK;LNIQS(0.999)PLT(0.001)SQENSHNHGDGAEDFK 216.69 2.1913e-32 311898000.0 314405.0 294789.0 291672.0 275794.0 274137.0 368031.0 339718.0 115534.0 440550.0 241764.0 True False 312712.2784136793 304600.8736612865 332736.8823415286 310709.49212220445 309046.72201269993 342589.88322178693 323284.5424912138 124155.73374976468 331982.3555675556 226334.41453542607 1.381638223491343 1.3458000820887541 1.4701117504578531 1.372789430895724 1.3654429117509554 1.5136446833548791 1.4283490345681082 0.5485499587175318 1.4667780692961891 1.0 17.788096439972872 1.78453096259039 24.999999998796415 0.9583181044922087 1.4115816028612174 0.4294517682147384 0.21240530661572476 69.93430902195088 38044.62516874619 0.0906806993971767 0.05064940671919873 60.887895362957195 -1.78453096259039 0.4532634983690087 LNKDNDTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNKDNDTLK 9 1 Q9H8Y8;Q9H8Y8-3 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 0 164.64 0.00085013 0.0 379830.0 333280.0 357430.0 307230.0 298960.0 394240.0 420360.0 402420.0 640820.0 420190.0 False True 377785.0374830807 344373.0233279858 407753.03716274624 346125.28649899823 337030.78392525174 366987.1167411368 400025.5808688575 432450.6238473552 482898.49754806684 393373.1144572417 0.9603733036110799 0.8754360953293312 1.036555428363083 0.879890551179549 0.8567712727146375 0.9329237389481712 1.0169113398123166 1.0993395530958714 1.2275838886812287 1.0 18.585538832753123 1.9512933044858107 2.2467335936891066 1.1232004929449035 0.9212667899545203 0.5830561839052033 0.07029278153983004 0.20096549106076375 1.8673328870339991 0.03876719180554637 0.019963552308969085 89.39089889859211 -1.9512933044858107 -0.20193370299038327 LNKPFLFDTKPLIVQYEVNFQNGIECGGAYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNKPFLFDTKPLIVQYEVNFQNGIECGGAYVK 32 2 P27824;P27824-2;P27824-3;H0Y9Q7;D6RDP7;D6RGY2;D6RFL1;H0Y9H1 P27824 CANX Calnexin 0 255.05 2.1693999999999998e-59 245690000.0 74941.0 90036.0 103530.0 48288.0 91860.0 132760.0 112380.0 74448.0 141020.0 112140.0 False True 74537.5259827278 93032.79383208868 118106.12410110814 54401.25584891979 103557.82650312291 123582.61368342464 106943.75006671007 80003.68779928407 106267.5105711875 104983.12919211575 0.7099952778729478 0.8861689925610967 1.1250009883490684 0.5181904584818313 0.9864235072819693 1.1771664136365418 1.0186755804449916 0.7620623276800971 1.0122341693275436 1.0 16.6797979796002 LNLAQFLNEDLS(ph) ddPTM_BT-474_Trastuzumab_2h_R1 3 LNLAQFLNEDLS 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 LNLAQFLNEDLS(1);LNLAQFLNEDLS(1);LNLAQFLNEDLS(1) 190.57 6.7873e-06 46084000.0 127059.4 138321.9 119884.2 124832.7 114858.4 140250.3 143666.6 126737.5 146076.8 145017.3 True False 126375.32630802647 142925.86082414576 136762.85330785348 140636.50702061484 129484.9364209263 130555.12687469418 136716.8976982914 136195.2958099849 110078.12996883605 135762.17175844303 0.9308581666834392 1.0527664589695047 1.0073708422342487 1.0359034862144407 0.9537630014590103 0.9616458339145195 1.0070323413914377 1.0031903146946743 0.8108159183302863 1.0 17.050722023098817 1.3081269767490575 24.99991584574571 0.9053968600494466 0.99638700470467 0.2930610598830926 0.05498510167184638 45.82278834988606 16466.4089730929 0.033569300943547896 0.012258460972476935 20.329513077233702 -1.3081269767490575 0.09099014465522337 LNLEEWILEQLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNLEEWILEQLTR 13 0 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 0 99.011 0.007111 819170000.0 54608.0 82986.0 110890.0 89427.0 77521.0 91792.0 94250.0 87540.0 108190.0 101730.0 False True 54313.99659551913 85748.13884390357 126502.34812684129 100748.44903084311 87392.83984703445 85446.63509512592 89690.76743003585 94072.67931911306 81528.02417172596 95237.50430456518 0.5703005028546889 0.9003610444230556 1.3282828970642968 1.0578652786685188 0.9176305121095587 0.8971952354176721 0.9417589014429534 0.9877692617634428 0.8560495654212343 1.0 16.539242194880472 LNLGTDSDSS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;Q16512-3;K7EN76 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LNLGTDSDS(0.06)S(0.94)PQK;LNLGTDS(0.002)DS(0.054)S(0.945)PQK;LNLGTDSDS(0.075)S(0.925)PQK;LNLGTDSDS(0.034)S(0.966)PQK 284.74 1.1105e-32 1086260000.0 3527770.0 2753490.0 2506790.0 2403270.0 2483470.0 4089990.0 3882500.0 3327270.0 5366200.0 4314110.0 True False 3508776.8782920963 2845138.250130146 2859724.2425907175 2707523.7355871787 2799725.183820057 3807258.6181008583 3694688.6424097004 3575567.782934712 4043771.9133960246 4038779.806304604 0.8687715217390253 0.7044549063281035 0.7080663912716012 0.6703816165864472 0.6932106522493845 0.9426754615732363 0.9148031879931232 0.8853089186375523 1.0012360433920235 1.0 21.945488061982665 2.7349775915586174 24.9129621912226 0.934308225896135 0.7231976731223179 0.7631974459229975 0.06091542114153707 148.88193950287462 1035180.0511777598 0.01951260139111563 0.019073779543583615 543.2223019418296 -2.7349775915586174 -0.21111055277381718 LNLLHEFLQTEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNLLHEFLQTEIK 13 0 P26358;P26358-2;K7EJL0;K7EMU8 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 131.26 7.2398e-06 0.0 77098.0 100390.0 104920.0 104880.0 97264.0 108890.0 127990.0 94904.0 141240.0 100830.0 False True 76682.91293439308 103731.4204629635 119691.8240190116 118157.79724641134 109649.99387110554 101362.6905994885 121798.63473071929 101986.21839274722 106433.29451903651 94394.94307509402 0.8123625104936979 1.0989086606095204 1.2679897897050814 1.251738635537004 1.1616087716041703 1.0738148389882647 1.290308895401577 1.080420360141688 1.1275317411269121 1.0 16.526421953163045 4.709526647555398 3.655687936570599 1.1637100082394867 0.783610159923461 0.5723653464822109 0.08848958917435323 0.16212637345275005 3.99353743065067 0.02062846963160566 0.1596748168997338 51230.27033046178 -4.709526647555398 -0.3800998483160257 LNLQFLTLHDYLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNLQFLTLHDYLLR 14 0 O60306;H0YH15 O60306 AQR Intron-binding protein aquarius 0 ; 165.49 3.956e-06 185862000.0 110019.0 132853.0 120549.0 122023.0 113407.0 117213.0 139074.0 115313.0 174114.0 127735.0 False True 109426.6699282599 137274.93179366548 137521.2513693082 137471.0992887001 127848.70923404818 109110.34119972325 132346.45930572724 123918.2416075495 131205.93770806794 119582.84294056441 0.9150699819258155 1.147948388063449 1.150008211777166 1.1495888198361914 1.0691225103051958 0.9124247134177412 1.1067345118355034 1.0362543535542126 1.097197009886113 1.0 16.86765088922245 2.998171280964369 24.984058789605456 1.0345058337641 1.1002821397671454 0.10360464249941992 0.08168483390791459 152.11951944720295 2078312.4579061994 0.023495471963913394 0.027671934508701757 995.7980717181529 -2.998171280964369 0.0657763060030454 LNLSTRPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNLSTRPEK 9 1 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ; 92.538 0.0091273 1095320000.0 1017630.0 1003870.0 827260.0 697740.0 962670.0 979980.0 816450.0 967130.0 1112320.0 962150.0 False True 1012151.1931493223 1037283.2060977692 943731.017327178 786073.8124591056 1085260.3183078752 912236.2892247853 776955.1943581183 1039302.1515866306 838203.6403243747 900744.7632619417 1.1236825729454538 1.1515839429822157 1.047723013020433 0.872693180710184 1.2048477688371253 1.0127578049093822 0.8625697600999267 1.1538253609412277 0.9305673199685539 1.0 19.780758833591804 4.141482685356865 5.0211730282588025 1.0158675495415426 1.1369363457717578 0.19781374517632655 0.10339877215825381 0.3233001248794786 13.145865868033711 0.025151136676947957 0.05747854411615805 13851.049628506815 -4.141482685356865 0.12106879623021527 LNLSVTTPYNADFDGDEMNLHLPQSLETR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNLSVTTPYNADFDGDEMNLHLPQSLETR 29 0 P24928;P24928-2 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 205.07 2.2748e-25 54884000.0 22943.0 29817.0 28178.0 28595.0 30507.0 30562.0 28370.0 23030.0 31490.0 30124.0 False True 22819.47743720694 30809.440820242868 32145.217472433367 32215.124068088608 34391.88562084447 28449.320875209585 26997.634716075485 24748.615543970445 23729.71144438161 28201.46052954605 0.8091594197151412 1.0924767810505591 1.1398422942937843 1.142321123203443 1.2195072515770184 1.008788918765532 0.9573133521858082 0.8775650295856793 0.8414355497482308 1.0 14.78348226005188 2.2680354206831743 2.6477170097022222 0.8995343238547242 1.0888647251249322 0.324955810889894 0.10844560078763588 0.29551771774774277 4.257534528671055 0.04602162976950622 0.03361500977083904 185.36828020194466 -2.2680354206831743 0.18933040127020795 LNLTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 LNLTSPK 7 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;H0Y7Y3;A0A0A0MQZ8 Q8IWZ3-6;A0A0A0MQZ8 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 LNLT(0.096)S(0.904)PK;LNLTS(1)PK;LNLT(0.016)S(0.984)PK 161.44 0.005943100000000001 433830000.0 6285000.0 4942800.0 4264260.0 4295700.0 4325800.0 6051000.0 5780600.0 5590600.0 8988300.0 6232400.0 True False 6251162.25832915 5107318.110014309 4864630.742387632 4839535.179551961 4876664.988974626 5632708.612521865 5500970.293963559 6007798.960491575 6773253.902049383 5834642.896173908 1.0713872930301143 0.8753437358374502 0.8337495248556915 0.8294483939583529 0.8358120755209406 0.9653904639503367 0.9428118210235015 1.0296772343053273 1.1608686294222004 1.0 22.476212929166895 1.8572416709266462 1.5835323733392614 1.0813879053997364 0.8882880869554686 0.4641964550874895 0.07842806748893175 0.3186114342035962 1.5059999130516482 0.056359004442904086 0.024355266421370734 71.98494396579858 -1.8572416709266462 -0.19309981844426782 LNNDDNVDGLLVQLPLPEHIDER ddPTM_BT-474_Trastuzumab_2h_R1 5 LNNDDNVDGLLVQLPLPEHIDER 23 0 P13995-2;P13995 P13995-2 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase 0 ;;;; 255.94 1.4575999999999995e-43 552070000.0 309672.8 371431.6 390607.4 338997.4 409986.1 633449.0 355152.4 321610.1 433284.1 427394.5 False True 308005.55605268216 383794.4762708567 445601.5266996158 381914.43608181394 462195.39965699974 589660.1616085538 337972.32159808016 345610.27876499726 326507.0392644835 400117.81709915923 0.7697871549078023 0.9592036641940961 1.113675791621108 0.9545049476943587 1.1551482586001816 1.4737163315634636 0.8446820090351591 0.863771279346319 0.8160272432546208 1.0 18.610065347230005 LNNEEHNELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNEEHNELR 10 0 Q13546-2;Q13546 Q13546-2 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 0 144.65 3.1832e-05 368680000.0 186690.0 252150.0 245310.0 230190.0 243390.0 227660.0 222670.0 231330.0 273080.0 263740.0 False True 185684.88178320913 260542.66032210633 279847.5157272562 259332.0303980876 274384.27381444705 211922.40005399578 211898.60141799532 248593.01926993814 205783.09308452613 246907.88740082606 0.7520411103018814 1.0552221035334761 1.1334085705936017 1.050318939293715 1.1112819306943253 0.8583055093333838 0.8582091226352876 1.0068249414259354 0.8334407428243124 1.0 17.913613398128135 2.731196577838062 24.97320036760084 0.9152620562685692 1.0303204212886548 0.19006908462692984 0.11153449930020773 941.3200286251094 3192231.1473259768 0.03590765256893536 0.03447349919235018 538.5134785920345 -2.731196577838062 0.1150583650200856 LNNLS(ph)PAPHLAS(ph)GSPPPGLPSGLPSGLQS(ph)GSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 3 LNNLS(1)PAPHLAS(0.549)GS(0.451)PPPGLPSGLPS(0.036)GLQS(0.521)GS(0.428)PS(0.014)R 120.56 7.071e-08 184610000.0 75178.0 82501.0 61279.0 83610.0 91763.0 78152.0 87991.0 97284.0 97268.0 86344.0 True False 74773.25000106094 85246.99591209232 69906.55055338363 94195.01742727353 103448.47412808705 72749.53619001961 83734.53917173768 104543.82607814252 73297.60472442402 80833.45199718249 0.9250285389725433 1.0546004631234067 0.8648220362507872 1.1652974740031734 1.279773058952039 0.899992940949192 1.0358896855556323 1.2933237848333692 0.9067731602873876 1.0 16.302664838899393 3.7305573608054425 24.989844617343877 1.1042330888201057 0.9587953561149817 0.15744041370616269 0.13626740811156196 970.7842939893238 3031235.002839544 0.03624164966131348 0.05725774051513386 5377.21449678794 -3.7305573608054425 -0.14543773270512406 LNNLS(ph)PAPHLAS(ph)GSPPPGLPSGLPSGLQSGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 3 LNNLS(0.999)PAPHLAS(0.501)GS(0.501)PPPGLPSGLPS(0.011)GLQS(0.139)GS(0.799)PS(0.051)R 131.65 1.9538e-08 154070000.0 74791.0 87204.0 85247.0 82503.0 92803.0 97071.0 88359.0 93142.0 106810.0 99542.0 True False 74388.3335660613 90106.53242406886 97249.03661979307 92947.87134077688 104620.91196352399 90360.71025055523 84084.73760584109 100092.72900549251 80488.10668067324 93189.1443378063 0.7982510634114963 0.9669209119190632 1.043566150444196 0.9974109323704614 1.12267273948002 0.9696484595137163 0.9023018528964901 1.0740814256504068 0.8637068968989308 1.0 16.50787428376183 4.71770283896697 3.5050705110443223 1.0018420349595003 0.7780532734158264 0.401783169259906 0.07191169980925999 0.250654279706187 5.452846344664723 0.016738520968537448 0.14397237527168932 52203.88676409309 -4.71770283896697 -0.2237887615436739 LNNLS(ph)PAPHLAS(ph)GSPPPGLPSGLPSGLQSGSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 3 LNNLS(0.993)PAPHLAS(0.524)GS(0.482)PPPGLPS(0.043)GLPS(0.152)GLQS(0.129)GS(0.119)PS(0.557)R 49.242 0.036173 66155000.0 15604.0 16749.0 17729.0 15998.0 18161.0 16295.0 21083.0 15030.0 17978.0 21724.0 True False 15519.989797767388 17306.480340015685 20225.089096769505 18023.345159688113 20473.695701319557 15168.565004304037 20063.13474511878 16151.614920793565 13547.56279285782 20337.555721147884 0.7631197185426281 0.8509616680248181 0.9944700028892148 0.8862099952821099 1.0066940187915556 0.7458401202328899 0.9865066884245214 0.7941767999189011 0.666135251384731 1.0 14.311858678170724 1.6096027020174117 24.99999964917633 0.7976070991331294 0.8916566304183935 0.0637786390968037 0.11424993586916116 0.35247140634087143 4946.040075597027 0.052759462680760594 0.027338509932060367 40.70077716820891 -1.6096027020174117 0.09404953128526405 LNNLS(ph)PAPHLAS(ph)GSPPPGLPSGLPSGLQSGSPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LNNLS(1)PAPHLAS(0.658)GS(0.342)PPPGLPSGLPSGLQSGSPSR;LNNLS(1)PAPHLAS(0.584)GS(0.416)PPPGLPSGLPSGLQSGSPSR 189.27 1.7867e-20 1252410000.0 166253.0 196188.0 196877.0 223260.0 203758.0 200707.0 186003.0 201960.0 207610.0 208460.0 True False 165357.9123204448 202717.9989818494 224595.57031443896 251524.6931086362 229705.37353171463 186832.5975034581 177005.3242895378 217031.28073210022 156447.29733147248 195155.90432841514 0.8473118601739804 1.0387489923989617 1.15085203846296 1.2888397815797654 1.1770352238237098 0.9573504739526082 0.9069944611650954 1.112091799010459 0.8016529034560878 1.0 17.57426758577359 2.72418093385116 24.235613967134523 0.9708327715989321 1.1103780272812958 0.23465256400557122 0.12882089499084692 888.706886789324 1497829.3304173404 0.04392599297046266 0.041593269550508016 529.8841559118829 -2.72418093385116 0.13954525568236364 LNNLSPAPHLASGS(ph)PPPGLPS(ph)GLPSGLQSGSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LNNLS(0.001)PAPHLAS(0.151)GS(0.848)PPPGLPS(0.579)GLPS(0.101)GLQS(0.171)GS(0.14)PS(0.009)R 94.437 0.00015621 776280000.0 54316.0 57566.0 52396.0 47077.0 65484.0 66246.0 52294.0 67704.0 71121.0 66815.0 True False 54023.568691074914 59482.04951061817 59772.90136580382 53036.94337308643 73822.9992459233 61666.56994631019 49764.33943752032 72756.4162739459 53594.18252257434 62550.809496800524 0.8636749728049198 0.9509397238681728 0.9555895734468665 0.8479017905563521 1.180208535106158 0.9858636593578287 0.7955826605260123 1.1631570695766518 0.85681037469732 1.0 15.932740934595426 5.472552138865707 0.6471279374858548 0.9925762195621102 0.6299094853978243 0.06846407001778687 0.11886018017250914 19.926240135894318 3.154659520713082 0.0477220081515193 6.616205385045437 296860.31152685866 -5.472552138865707 -0.36266673416428585 LNNLSPAPHLASGS(ph)PPPGLPSGLPSGLQS(ph)GSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LNNLSPAPHLAS(0.327)GS(0.673)PPPGLPSGLPS(0.01)GLQS(0.542)GS(0.436)PS(0.011)R 107.03 7.670700000000001e-06 880520000.0 192780.0 284250.0 288290.0 331980.0 308450.0 296930.0 268100.0 295150.0 332110.0 324900.0 True False 191742.09389987154 293711.0894172465 328878.72613839933 374008.63396132365 347729.2791736152 276403.9279980359 255130.97875854213 317175.5917413318 250265.94054600154 304164.6038391159 0.6303892414821916 0.9656320482727878 1.0812524599751117 1.2296257659196628 1.143227301219909 0.9087314056576957 0.8387924680857688 1.0427761407408795 0.8227977134327459 1.0 18.214492748350732 -0.306893526360854 8.544718323153496 0.9999999998857334 0.977313101730199 0.0 0.1656915911544773 0.0 0.0 0.16348069803445114 0.038532770344848415 0.4932947275428493 0.306893526360854 -0.022686898155534374 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 34 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LNNLSPAPHLASGSPPPGLPS(0.001)GLPS(0.003)GLQS(0.189)GS(0.663)PS(0.143)R 157.85 2.1586e-12 2214200000.0 164030.0 238410.0 191240.0 216690.0 192830.0 310670.0 225160.0 243850.0 215660.0 267150.0 True False 163146.8807054461 246345.33272811168 218164.9297121215 244122.93178227352 217385.75750704558 289194.11413851683 214268.15060527163 262047.32524521035 162513.48269594615 250100.25828137825 0.6523259185198272 0.9849863187704426 0.8723098936854053 0.9761002785835596 0.869194454259512 1.1563127368431407 0.8567290257021914 1.0477691108594975 0.6497933421288531 1.0 17.932147021844024 4.743983988550619 24.133212593232287 0.9417064486270197 0.6523257147806785 0.300368869509 0.12894482250121883 410.8189290273673 1827990.6692086398 0.02802541923428089 0.23887123017972794 55460.52655467623 -4.743983988550619 -0.2893807338463412 LNPEDIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNPEDIKK 8 1 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 71.34899999999998 0.078523 377180000.0 469000.0 513440.0 447570.0 438420.0 486190.0 709380.0 683270.0 582540.0 1011000.0 732640.0 False True 466474.95611079887 530529.5400189658 510583.96565182135 493923.9270477848 548103.414626098 660342.2303009016 650217.619755126 626012.0928781825 761852.5967059318 685882.2879553391 0.6801093486484275 0.7734994026460573 0.7444192314309592 0.7201292929143935 0.7991216922367699 0.9627632057235738 0.9480017652788033 0.9127106850132644 1.1107628963230196 1.0 19.387601474807433 2.824711888784376 2.4426136389083424 0.976924109247625 0.7332449673351505 0.8417586018816454 0.05333600789438005 0.11935844067875609 1.3976205863235769 0.01823390988368593 0.019154219393944336 667.9006848559068 -2.824711888784376 -0.24367914191247442 LNQENEHIYNLWCSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNQENEHIYNLWCSGR 16 0 Q96A33;Q96A33-2 Q96A33 CCDC47 Coiled-coil domain-containing protein 47 0 83.41799999999998 0.007835 258630000.0 80464.0 98393.0 94719.0 82537.0 103870.0 111380.0 99871.0 84649.0 97270.0 99019.0 False True 80030.79076439091 101667.95152517538 108054.61188769322 92986.17573729075 117097.22881427582 103680.56276031808 95039.85818573063 90965.93821891243 73299.11185122267 92699.52264556906 0.8633355219139988 1.0967473038010838 1.1656436711204372 1.0030922822851815 1.2631912815990423 1.1184584321618825 1.0252464680871087 0.9812988850731748 0.7907172524660923 1.0 16.500274289288676 1.6739055852053737 2.374969151296035 0.8962083961699011 1.0906419893794486 0.3031394950804728 0.11014792065011521 0.29258361440557307 3.634922394729671 0.07346208569520202 0.030014342108658724 47.19604268104676 -1.6739055852053737 0.19443359320954745 LNQLKPGLQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNQLKPGLQYK 11 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 113.47 0.00079042 0.0 1100500.0 1260600.0 1107800.0 973880.0 877100.0 1075400.0 1190600.0 1046200.0 1796200.0 1288000.0 False True 1094575.0302770436 1302558.3089512084 1263768.6108297857 1097173.1081458342 988793.4860210005 1001060.1292193045 1133006.1294663204 1124272.7564959563 1353550.5778468817 1205798.737287721 0.9077593104294837 1.0802452089816703 1.0480759116338603 0.909913963431223 0.8200319468281714 0.8302049904870958 0.9396312124317384 0.9323884009240663 1.1225344130741988 1.0 20.201557693023226 1.2564332419678854 24.601499402658444 1.0612671702710395 0.9344141672191251 0.28041066637689904 0.08184005324488024 245.04263622430204 337301.7601396766 0.060437110945238764 0.021960370260575467 18.048172864243107 -1.2564332419678854 -0.12685300305191438 LNQPGT(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNQPGTPTR 9 0 P36507;G5E9C7;M0R1B6 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 LNQPGT(0.998)PT(0.002)R;LNQPGT(0.999)PT(0.001)R 116.74 0.014144 19333900000.0 2747000.0 2949100.0 2931700.0 2886500.0 2740500.0 2774800.0 2699800.0 2688800.0 3086800.0 2652700.0 True False 2732210.457220394 3047259.0107314023 3344457.877206793 3251930.6040404853 3089486.4307838962 2582984.607176609 2569200.359762449 2889451.9094497464 2326099.5010008626 2483402.4149092683 1.1001883709290894 1.227050031214025 1.3467240980068804 1.3094658298297963 1.244053888421773 1.0400990961712417 1.0345485469201798 1.1635053151687111 0.93665830677943 1.0 21.243886626631838 2.7486603245111736 10.665782975474514 1.054704545563559 1.2537027110701193 0.6235598612348685 0.08094252918969937 0.2738050845964549 280.3184976298972 0.026117094801927938 0.026831942948201373 560.6093341758567 -2.7486603245111736 0.19899816550656024 LNQS(ph)PSLAPVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNQSPSLAPVKR 12 1 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 1 LNQS(0.921)PS(0.079)LAPVKR 72.797 0.025067 350360000.0 409560.0 380010.0 307160.0 300800.0 326600.0 401300.0 378620.0 396200.0 510350.0 474480.0 True False 407354.97446639376 392658.40312910447 350405.4581174189 338881.24915828137 368190.57409013686 373559.0755585892 360304.704131142 425766.45586283435 384581.08083963697 444198.28017723426 0.9170566223350975 0.8839710117122347 0.7888492003562189 0.7629053606940315 0.8288878875065196 0.8409737097801006 0.8111348472294425 0.9585054127020806 0.8657869649702152 1.0 18.760844281584248 1.301674197696338 0.9209779648003855 0.9857375129100807 0.8298534491131496 0.451021610029291 0.052932344505455274 0.4658022336014668 0.8404844579682872 0.05131828963128534 0.01861644989088995 20.029688613493523 -1.301674197696338 -0.1558840637969311 LNQVNVTFQVDT(ph)AS(ph)DSPFLILPLTFY(ph)HVVDETSPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNQVNVTFQVDTASDSPFLILPLTFYHVVDETSPLK 36 0 A0A1W2PQP0;P78508 A0A1W2PQP0 KCNJ10 ATP-sensitive inward rectifier potassium channel 10 3 LNQVNVT(0.46)FQVDT(0.54)AS(0.747)DS(0.249)PFLILPLT(0.264)FY(0.352)HVVDET(0.197)S(0.192)PLK 46.645 0.064026 40284000.0 4850.7 7841.6 7490.5 9011.4 8794.2 9536.3 6715.2 5964.4 9088.2 7242.5 True False 4824.584370163437 8102.602915652701 8545.097291406848 10152.242316040347 9914.089242692839 8877.078027035566 6390.360121444839 6409.493814609522 6848.534885640812 6780.277449383791 0.7115614967351974 1.1950252738387699 1.2602872603957305 1.4973195996519302 1.4621952149751418 1.3092499670263993 0.9424924229355263 0.9453143860937481 1.0100670565130376 1.0 12.727128594404288 2.2355509550855803 24.980881058232775 0.9662966509118573 1.2600792772788103 0.2881296386568133 0.20216678944385075 98.38732634628168 816624.0233353676 0.0784764552958483 0.06046905473319144 172.00891447417857 -2.2355509550855803 0.29378262636695296 LNS(ph)CETK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNSCETK 7 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 LNS(0.993)CET(0.007)K;LNS(0.999)CET(0.001)K 118.81 0.0051631 674060000.0 1296860.0 916860.0 678250.0 736710.0 687100.0 648340.0 922900.0 923800.0 1547440.0 1032100.0 True False 1289877.849854692 947377.1308464257 773741.7045453168 829977.4104634215 774598.112239231 603521.7818281981 878255.801179628 992738.6469613503 1166094.146633658 966230.4943747338 1.3349587467630035 0.9804877162974364 0.8007837768006068 0.8589849060813546 0.8016701157217029 0.6246147118537679 0.9089506140540142 1.0274346056566663 1.20684883516149 1.0 19.88200785959033 1.621201482694393 3.528505039425131 1.1058339814424534 0.8844398548917431 0.1736813345239896 0.17801533714680523 0.3105325295306882 9.106372221085996 0.113542593270695 0.04911850526176622 41.80242560989503 -1.621201482694393 -0.22139412655071022 LNS(ph)GGGLSEELGSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNSGGGLSEELGSAR 15 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 LNS(0.941)GGGLS(0.059)EELGSAR 172.95 1.046e-06 293910000.0 238980.0 216960.0 176200.0 205080.0 201530.0 236870.0 238990.0 212670.0 284020.0 236800.0 True False 237693.35823317387 224181.38244491062 201007.42844214488 231043.10697267362 227193.6509381054 220495.7344320038 227429.14066954114 228540.5153163783 214027.07667301563 221687.22126532055 1.0722014416369845 1.0112508116857353 0.9067163515102857 1.0422030898035197 1.0248387328839068 0.9946253698047361 1.0259009940737565 1.0309142494183532 0.9654461608180064 1.0 17.7581660856502 LNS(ph)SENGEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNSSENGEDR 10 0 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 LNS(0.5)S(0.5)ENGEDR;LNS(0.5)S(0.5)ENGEDR 245.18 1.6981e-12 2142500000.0 692280.0 703770.0 648500.0 707270.0 645240.0 658940.0 731530.0 677690.0 843750.0 718730.0 True False 688552.8413995393 727194.5590120513 739803.1631369533 796810.3094819731 727407.4893628891 613389.0287779137 696143.0991840222 728262.669040093 635819.118170753 672860.036064289 1.0233225403414372 1.080751597710539 1.0994904192322519 1.1842140516216377 1.0810680533468155 0.9116145942709946 1.0346031297324791 1.0823390155549533 0.9449500402636531 1.0 19.359946910511507 2.977110265346033 24.93415769611171 1.0085477536751764 1.1005537497076006 0.4183060290945205 0.05744107006266681 836.349114978018 911049.4153877462 0.018396508447843404 0.0196436987352187 948.6592929025059 -2.977110265346033 0.09200599603242421 LNS(ph)VQSSERPLFLVHPIEGSTTVFHSLASR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNSVQSSERPLFLVHPIEGSTTVFHSLASR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 LNS(0.999)VQS(0.001)S(0.001)ERPLFLVHPIEGSTTVFHSLASR 254.97 2.5441999999999994e-58 3450800000.0 726970.0 714090.0 472560.0 779380.0 462260.0 647240.0 787110.0 551350.0 1066500.0 944220.0 True False 723056.0742939597 737858.0539734792 539092.3404348462 878049.428088369 521126.07097031956 602497.8222390767 749034.4822478038 592494.5366985721 803675.3653678314 883959.0712125868 0.817974607469206 0.8347197036637783 0.6098612005817606 0.9933145738115327 0.5895364253182621 0.6815901797496002 0.8473633074666028 0.670273721933536 0.9091771231731072 1.0 19.75362004640011 1.048565372122341 5.235691606883596 0.9991201519050523 0.7543333354915721 0.32936293732071975 0.11700767368938692 0.17576648941526798 10.113167819059601 0.10415292615637578 0.02631150936058106 11.18318146614133 -1.048565372122341 -0.2447868164134802 LNSEQSQALQHQQETGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNSEQSQALQHQQETGR 17 0 Q92817;K7EKI0 Q92817 EVPL Envoplakin 0 256.67 4.1895e-27 250850000.0 47586.0 40973.0 40445.0 44047.0 40268.0 40760.0 48737.0 34985.0 47195.0 41869.0 False True 47329.802263301644 42336.76153629844 46139.304445757945 49623.34568375938 45395.89111286472 37942.35713871939 46379.40511657987 37595.75835023039 35564.4246305999 39196.884574145646 1.2074888802392343 1.0801052684739099 1.177116624115365 1.266002291327282 1.1581504909399856 0.9679942054309656 1.1832421280535093 0.959151696842474 0.9073278403880668 1.0 15.25845137092961 2.0856200826649367 0.9425034049680393 0.9474825619268462 1.1734549493617858 0.5344887833594005 0.08052039564145051 0.4490643404780869 0.7404476894938111 0.06442472925845824 0.032731992622103266 121.79237028716862 -2.0856200826649367 0.22597238743493964 LNSGGGLS(ph)EELGSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNSGGGLSEELGSAR 15 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 LNS(0.091)GGGLS(0.909)EELGSAR 234.91 1.2057e-17 242410000.0 303360.0 229710.0 201390.0 210100.0 233140.0 290970.0 236510.0 217170.0 359360.0 250730.0 True False 301726.7434664642 237355.75848737283 229743.96148673975 236698.6384579615 262828.997070957 270855.92876970506 225069.10774406133 233376.32816691534 270800.543177294 234728.19673924713 1.2854303303051566 1.0111940609804309 0.9787659287561254 1.0083945676151693 1.1197163388211355 1.1539130472279442 0.9588498990348577 0.9942407065230704 1.1536770909466776 1.0 17.840631630539402 4.742519023042436 24.71268988725871 1.0388506276852416 1.2854304428147545 0.5248399128295349 0.06940166086343334 272.4837827509016 1701061.5356045624 0.01715757593589606 0.12910797314495928 55273.7618523501 -4.742519023042436 0.24657981512951288 LNSGVDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNSGVDYR 8 0 P62312 P62312 LSM6 U6 snRNA-associated Sm-like protein LSm6 0 ; 103.56 0.011047 448800000.0 1112510.0 1399710.0 1303240.0 1267310.0 1205860.0 1198170.0 1281690.0 1179780.0 1474120.0 1303070.0 False True 1106520.369771481 1446298.5012074357 1486724.8640348525 1427751.3160597775 1359419.1233078155 1115343.3280887983 1219689.7581687276 1267821.1744014535 1110842.8781959943 1219906.9569856445 0.9070530858399738 1.1855809928170247 1.218719883120027 1.1703772225282743 1.1143629565544093 0.9142855704707021 0.9998219546042646 1.0392769441484322 0.9105963957618993 1.0 20.21833968611703 2.843853357841263 6.3542396440056965 0.9831177881176782 1.1329694192916908 0.40660713450022923 0.0874036158383088 0.24612324567113347 12.755135670039008 0.02695006935657845 0.028641743356210024 697.9966814813475 -2.843853357841263 0.14985163117401257 LNSHMNALHLGSQANR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNSHMNALHLGSQANR 16 0 E7EUI8;E7EM57;P11413;P11413-3;P11413-2;E9PD92 E7EUI8;P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 272.4 2.0544e-35 2899300000.0 947990.0 1199040.0 1277270.0 1284000.0 1224790.0 1310140.0 1213930.0 898950.0 1382210.0 1214390.0 False True 942886.1271715896 1238949.3215650131 1457098.5137701395 1446554.2683485134 1380759.746600914 1219573.105537826 1155207.5682370632 966034.2137756078 1041582.8661650902 1136886.5905084142 0.8293581215958684 1.089773889417551 1.2816568740761793 1.272382206303987 1.2145096600914609 1.0727306626005981 1.0161150442635232 0.8497190677071831 0.91617130051582 1.0 20.116656915487926 2.1696166253382008 2.363263290380178 0.9095616424641155 1.1482075942581982 0.3462728832466082 0.12589642060680203 0.3127346171630004 3.505245271201424 0.06267045509615567 0.04052971023319239 147.78032772546172 -2.1696166253382008 0.23864595179408266 LNSLCMAWLVDHVYAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNSLCMAWLVDHVYAIR 17 0 P30153;B3KQV6;P30154-4;P30154;P30154-2;P30154-3;P30154-5 P30153 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 ; 202.5 1.0534000000000002e-11 225211000.0 207291.0 202006.0 170622.0 174086.0 159470.0 196004.0 201069.0 161775.0 234290.0 187657.0 False True 206174.9682881954 208729.6475947942 194644.0945269903 196125.26975056034 179777.5592472568 182454.70482378695 191342.52431182863 173847.47197680487 176552.36882515624 175680.56959875915 1.1735786647270277 1.1881202802991622 1.1079432117708996 1.1163742820193223 1.0233206760306781 1.0385593878736812 1.0891501817693339 0.9895657349805904 1.0049624112011262 1.0 17.422595111465267 4.054964320916681 0.4585307547736937 1.0012293833427595 1.2612451285004036 0.8221810729201307 0.02900305381341826 1.070159487514531 0.2752996872819424 0.022157698493450704 0.142631785309754 11349.175736816134 -4.054964320916681 0.26001574515764414 LNSNDEDIHTANER ddPTM_BT-474_Trastuzumab_2h_R1 4 LNSNDEDIHTANER 14 0 A0A5F9ZHC6;A0A5F9ZHM8;P04424-3;P04424-2;P04424;F8W943 A0A5F9ZHC6 ASL Argininosuccinate lyase 0 ;;; 178.03 2.0295e-06 2072020000.0 1015630.0 1337000.0 1157340.0 1158820.0 1205190.0 1307600.0 1287240.0 1092200.0 1362210.0 1268990.0 False True 1010161.9609271004 1381501.236766433 1320283.4122203854 1305526.4931835083 1358663.802779217 1217208.68975931 1224971.283465668 1173705.5100792218 1026511.5981788214 1188001.971763003 0.8503032696385286 1.1628778988609556 1.1113478290453305 1.0989262006409788 1.1436545014844974 1.024584738654065 1.0311188975956012 0.9879659613169117 0.8640655677157432 1.0 20.180105799949676 1.8104873746755539 1.618328530436737 0.9348311854420734 1.077719521673931 0.25671957638910325 0.088090622581958 0.4511945357426331 2.260589112132814 0.06156291603839042 0.02575048931327255 64.63792029116588 -1.8104873746755539 0.1428883362318576 LNSVQSSERPLFLVHPIEGSTTVFHSLASR ddPTM_BT-474_Trastuzumab_2h_R1 2 LNSVQSSERPLFLVHPIEGSTTVFHSLASR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 245.28 5.0309e-46 10699200000.0 3327340.0 4001540.0 4224630.0 4307990.0 3738290.0 4460570.0 4679190.0 3079520.0 4022220.0 4556850.0 False True 3309425.9711422296 4134728.839917993 4819421.182857765 4853381.09229183 4214339.072919218 4152221.294952345 4452839.703458345 3309329.419885703 3030997.7759866863 4266027.931684433 0.7757628464086285 0.9692221678176879 1.12972096292741 1.1376815084226328 0.9878836098607527 0.9733225758118393 1.0437905646108017 0.775740213819702 0.7104964675629545 1.0 22.024461981034232 1.733426926121931 7.940709621334068 0.8098101480959743 1.0096031061505584 0.30977437118879625 0.11727355319390609 0.12344050653130768 24.648916898865323 0.05769581088897446 0.03066521817962034 54.12861640475667 -1.733426926121931 0.19979295805458408 LNT(ph)SDFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNTSDFQK 8 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 LNT(0.818)S(0.182)DFQK;LNT(0.799)S(0.201)DFQK 137.55 0.00831 2713600000.0 8147700.0 2976200.0 2727900.0 3186600.0 2322770.0 4403900.0 3242800.0 4390200.0 10681700.0 4277900.0 True False 8103833.688494579 3075261.0178491077 3111964.608668148 3590023.2332705385 2618560.9913635864 4099468.758665511 3085933.3753010053 4717819.016983888 8049338.162446847 4004880.759505546 2.023489380866136 0.7678782971378124 0.7770430121500945 0.8964120154513097 0.6538424359198353 1.0236181811244844 0.7705431348927361 1.178017349402024 2.009882102817124 1.0 21.933327858092753 1.4599669693221093 6.796921306386135 1.537049076100468 0.9598942566588149 0.18216639029422177 0.4304206763495459 0.20524044344431955 24.180904245445337 0.2410420221209874 0.10258946904919053 28.838121637219736 -1.4599669693221093 -0.5771548194416531 LNTQEIFDDWAR ddPTM_BT-474_Trastuzumab_2h_R1 6 LNTQEIFDDWAR 12 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;;; 292.33 8.6381e-36 1770928000.0 1403338.0 1770608.0 1574984.0 1640471.0 1615886.0 1786012.0 1670326.0 1594023.0 1975518.0 1749991.0 False True 1395782.5841335107 1829541.6169248614 1796728.0571936613 1848154.46039872 1821659.5039933086 1662549.1942600214 1589525.9501150325 1712977.0905447854 1488678.0594849752 1638305.0761373276 0.8519674415124086 1.1167282843549609 1.0966993164849685 1.1280893206753406 1.111917145668791 1.0147982927452406 0.9702258591926585 1.0455788213655015 0.9086696251926828 1.0 20.643772602034726 2.5356175851035276 6.327198077257483 0.9909803175430448 1.0696355602298764 0.17072136685935158 0.08112422938527901 0.4043238939291217 34.26073226679218 0.02631038734920469 0.024506046315420648 343.25556355946225 -2.5356175851035276 0.07865524268683155 LNVDFALIHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LNVDFALIHK 10 0 B1ALA9;P60891;A0A2R8Y7H4;P60891-2 B1ALA9 PRPS1 Ribose-phosphate pyrophosphokinase 1 0 103.22 0.0028432 226940000.0 315700.0 348410.0 316270.0 295920.0 297890.0 323050.0 342350.0 302820.0 504940.0 377620.0 False True 314000.30627756764 360006.6162317076 360798.0669318798 333383.44165863877 335824.52576763835 300718.3138779028 325789.22259599704 325417.96608880244 380504.3028493512 353519.96830325265 0.8882109482659133 1.018348745502519 1.0205875177675505 0.9430399172605136 0.9499449985228698 0.8506402490394656 0.921558191350968 0.9205080201004543 1.0763304394815716 1.0 18.431432181291736 1.2452148308910902 24.99024437497092 1.0381652293191417 0.940130510272798 0.3671933789064554 0.05200337668159972 157.0815526202216 589944.551474512 0.038607659184378945 0.013378845110498621 17.587934148300857 -1.2452148308910902 -0.09803471904634364 LNVEFALIHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNVEFALIHK 10 0 P11908;P11908-2 P11908 PRPS2 Ribose-phosphate pyrophosphokinase 2 0 ; 97.214 0.0059828 284060000.0 1151000.0 1860090.0 2008480.0 1840360.0 1270760.0 1277070.0 1602710.0 1103280.0 1493670.0 1357410.0 False True 1144803.1438881217 1922001.9712018487 2291256.5259788837 2073349.3873036383 1432583.7536153768 1188789.156799422 1525180.7943532385 1185612.3559423243 1125575.0426525727 1270778.9316628308 0.9008672675979384 1.5124597389153156 1.8030331388802179 1.63155788598937 1.1273272777199905 0.9354806939109984 1.200193642144759 0.9329808091726348 0.885736310704918 1.0 20.277281646139528 3.099606259528038 5.049100497996357 1.0025636784370031 1.4875932956856963 0.48226778986131225 0.23000636529284074 0.1811634103814022 7.506499651839387 0.06971008249507023 0.08398793307738059 1257.7845608901694 -3.099606259528038 0.4850296172486932 LNWKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNWKPR 6 1 O60547;O60547-2 O60547 GMDS GDP-mannose 4,6 dehydratase 0 80.999 0.057489 344400000.0 362280.0 404630.0 370920.0 345300.0 334560.0 385400.0 397740.0 319790.0 534930.0 405090.0 False True 360329.52473309217 418097.8649459999 423142.31190556387 389014.9445955929 377164.23290751997 358758.20513401495 378499.7966856493 343654.35366071697 403103.669194762 379236.8093850022 0.9501438568619659 1.1024717395550754 1.1157733148102422 1.0257837186913572 0.9945348752383946 0.9460004837499904 0.9980565897583938 0.9061735178555365 1.0629339220748746 1.0 18.532739475961748 3.300122654255342 2.9219652183968496 0.9728059928740074 1.0615208319634395 0.22967085268222198 0.05669746153937093 0.2962698070456801 5.137374116354576 0.016366596240389438 0.022449480882875194 1995.8259002436012 -3.300122654255342 0.08871483908943212 LNWLSVDFNNWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LNWLSVDFNNWK 12 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 ; 316.83 3.9643e-46 1531560000.0 1626750.0 1578310.0 1453360.0 1308670.0 1194310.0 1618270.0 1653560.0 1506840.0 2186250.0 1686660.0 False True 1617991.758748917 1630843.094241459 1657980.455168421 1474347.4878190428 1346398.2992700266 1506402.8038978293 1573570.9855873722 1619288.05237848 1647477.9817491048 1579015.9147777245 1.024683629598932 1.0328224554158658 1.0500087045682578 0.9337128739621249 0.8526819056535963 0.954013692832148 0.9965516945463347 1.025504579924658 1.0433574268192336 1.0 20.590594281405917 -0.054140734814626335 8.858466800061368 0.9999999974132106 0.9894955413269662 0.002239119853735594 0.058406718184237136 0.0 0.0 0.06248373887318031 0.014727558490371766 0.8827937813064948 0.054140734814626335 -0.010504456086244396 LNYSDHDVIK ddPTM_BT-474_Trastuzumab_2h_R1 4 LNYSDHDVIK 10 0 A0A087WY71;Q96CW1-2;Q96CW1;E9PFW3 A0A087WY71 AP2M1 AP-2 complex subunit mu 0 ;;; 131.43 0.00025026 1618890000.0 3874520.0 4669720.0 4517720.0 4525860.0 4334940.0 5402230.0 5305050.0 4611420.0 6164380.0 5353620.0 False True 3853660.0148196397 4825148.807294651 5153775.707273816 5098833.411953123 4886968.913797608 5028786.555581553 5048424.464240975 4955547.576716291 4645251.147460055 5011947.38813532 0.7688947461703868 0.9627293412371261 1.0282980462792255 1.0173357813019919 0.9750638894108165 1.003359805309628 1.0072780245443131 0.9887469266831206 0.926835576617716 1.0 22.256939839675358 4.727730250375109 3.6490101797353436 0.9941323166475661 0.7463944374509054 0.865114151390457 0.02641581048080214 0.08412341210594801 2.080400570129101 0.006374025446005819 0.055857725066575756 53423.243309281264 -4.727730250375109 -0.24773787919666068 LNYYVGGEIVTIAHLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LNYYVGGEIVTIAHLDR 17 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 108.49 0.00065312 127560000.0 62946.0 85923.0 79625.0 78573.0 78428.0 77094.0 79219.0 54922.0 63348.0 73630.0 False True 62607.10572995803 88782.89511344966 90835.50788709302 88520.33374372886 88415.3409208244 71764.67323975556 75386.87432403195 59020.55852826507 47736.73421971058 68930.87036218551 0.9082593241750708 1.2879990437804583 1.3177768887845651 1.284189990328192 1.2826668291907684 1.0411107949555884 1.0936591098868251 0.8562282503927718 0.6925305595139891 1.0 16.072862611306483 2.02759607948849 1.5013366619955726 0.8265889978564196 1.2212019664249005 0.5433456618490333 0.1385299699162916 0.28267248746989776 1.192199693594334 0.09009942026078567 0.04419558658282835 106.56045825707461 -2.02759607948849 0.39461296856848094 LPADVSPINYSLCLKPDLLDFTFEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPADVSPINYSLCLKPDLLDFTFEGK 26 1 E9PLK3;P55786;P55786-2;E9PP11;E9PJY4;E9PPD4;E9PJF9;E9PPZ2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 111.58 0.0017966999999999996 55492000.0 33279.0 36730.0 29414.0 24039.0 30979.0 38604.0 30691.0 33822.0 48233.0 40741.0 False True 33099.8295616445 37952.535846246115 33555.23552892877 27082.334935225812 34923.99202308127 35935.39634404133 29206.35907899445 36345.96938463606 36346.62343908731 38140.87449987507 0.8678309030841157 0.9950620258161734 0.8797710060119016 0.7100606708772375 0.9156578731092194 0.9421754696305936 0.7657495917952829 0.9529401163771195 0.952957264763459 1.0 15.219050301914576 1.5736863349434451 9.323230755771961 0.9677411635794401 0.8710641106305047 0.26019130964096926 0.07797291466444102 0.17014501269298846 28.67420473280127 0.04273419602476706 0.020063599069582844 37.47022793383634 -1.5736863349434451 -0.09667705294893536 LPAELQELPGLSHQYWSAPSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPAELQELPGLSHQYWSAPSDK 22 0 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;H7C4A8;G3V5M0;G3V359 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 226.75 5.0133999999999986e-26 1796640000.0 1632550.0 1337420.0 1380060.0 1178450.0 1218440.0 1599700.0 1521650.0 1515730.0 1686330.0 1406800.0 False True 1623760.5321933576 1381935.216212536 1574360.4523034424 1327641.649170799 1373601.1117403114 1489116.5042887512 1448041.9762325075 1628841.4693209857 1270756.5671643096 1317016.8195779263 1.2329079690217895 1.0492920027060963 1.195398896126466 1.008067345408905 1.0429639859728739 1.1306738700314996 1.0994863199215419 1.2367658826430115 0.9648749721902244 1.0 20.328842339646556 4.751800581957964 24.113309628925276 1.097082886490672 1.232908114894862 0.20765501476685222 0.08387617116640471 2292.885486339286 4175798.9912108514 0.019655952141999014 0.36200956721343114 56467.76282884178 -4.751800581957964 0.13582522840418987 LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSR 33 1 P27695;G3V3M6;G3V5Q1;G3V3C7;A0A0C4DGK8;H7C4A8;G3V5M0;G3V359 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 238.36 5.0018e-47 556720000.0 190370.0 210830.0 238330.0 228240.0 226810.0 259360.0 258250.0 241580.0 288470.0 284080.0 False True 189345.06907209542 217847.34910057392 271884.79239850433 257135.16059802548 255692.90909180624 241431.05366776875 245757.46088919626 259607.92631838348 217380.4337999608 265949.7711868755 0.7119580070593401 0.8191296729768518 1.0223163238123578 0.9668561076420094 0.9614330854683756 0.9078069614059635 0.9240747220515911 0.9761539750901466 0.8173740207778317 1.0 18.020794270154855 4.451595578157965 4.550795626564948 0.9460823264456527 0.731435663762393 0.6614470860554056 0.05434169535561512 0.09773196163472764 4.850548854435712 0.012879354214357984 0.04296291261359501 28287.565863643573 -4.451595578157965 -0.21464666268325971 LPAGYTLHETPPAGAS(ph)PVLTPQESQSALEAAAANGGQRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPAGYTLHETPPAGASPVLTPQESQSALEAAAANGGQRPR 40 1 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 LPAGYTLHETPPAGAS(0.992)PVLT(0.005)PQES(0.001)QS(0.001)ALEAAAANGGQRPR 98.095 6.6586e-05 135900000.0 60388.0 39060.0 37042.0 40552.0 33021.0 44541.0 46191.0 38664.0 76440.0 48274.0 True False 60062.8777177375 40360.088487731395 42257.191625164196 45685.879042109766 37226.02861919902 41461.98550823604 43956.56486324438 41549.30401181384 57602.386243522706 45193.11199054927 1.329027258186995 0.8930584044792368 0.9350361097948062 1.0109035875127066 0.8237102288283155 0.9174403727034005 0.9726385930766734 0.9193724924387279 1.274583309411586 1.0 15.46381528373143 -0.5745753942788009 4.957053382096111 1.0000000054752034 0.9879124692919659 0.0 0.15739154236621095 0.0 8.584951620231533e-10 0.1427944436406676 0.03365697067217955 0.26633276983023835 0.5745753942788009 -0.012087536183237546 LPALGEAHVS(ph)PEVATADK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPALGEAHVSPEVATADK 18 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 LPALGEAHVS(1)PEVATADK 138.82 7.6973e-07 129220000.0 203050.0 147800.0 147280.0 130300.0 132850.0 154020.0 134040.0 140910.0 185550.0 175960.0 True False 201956.8013609758 152719.43365301332 168015.74381929127 146795.96664003987 149767.66003635825 143372.95992408137 127555.97311747467 151425.41972648175 139823.68874261712 164730.0821530648 1.2259861630695994 0.9270889181680164 1.0199457295430319 0.8911302946090878 0.9091700682647406 0.8703508069088516 0.7743332089092962 0.9192335592097832 0.8488048261439884 1.0 17.32974451104401 7.999999999997761 0.7668478046729232 0.8795918971164319 66.5854324780409 0.6815078090400011 0.06588896799421197 221.0650970137886 0.8791762363418499 0.021237874692666144 25146.335362947535 99999999.99948443 -7.999999999997761 65.70584058092447 LPASPETHLDMLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LPASPETHLDMLR 13 0 P04626-5;P04626-4;P04626;J3QLU9;P04626-6;F5H1T4;J3QL83;J3KRI9;J3QLV2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 ;;; 251.2 2.6717e-18 1535770000.0 537342.0 795163.0 906072.0 693133.0 767946.0 929954.0 721328.0 528645.0 747365.0 690571.0 False True 534449.0103763092 821629.5197688151 1033639.0618809937 780883.5667314733 865739.3711274475 865668.4688562474 686434.6088994464 568095.1743049182 563186.9099279225 646498.1675524218 0.826682946990678 1.2708922639014173 1.598827519951447 1.2078666358604253 1.3391211523538438 1.339011481089858 1.0617734795726028 0.8787266581986928 0.8711345804120258 1.0 19.30228675527392 2.0391242740113626 3.589633326010615 0.9118868044642439 1.2794841723433918 0.4246839186064548 0.18203142980440404 0.21425802995257587 5.719719613413538 0.08097067977097233 0.05245470012033444 109.42694483042409 -2.0391242740113626 0.367597367879148 LPAYLATS(ph)PIPTEDQFFK ddPTM_BT-474_Trastuzumab_2h_R1 4 LPAYLATSPIPTEDQFFK 18 0 Q92539;J3KTK1 Q92539 LPIN2 Phosphatidate phosphatase LPIN2 1 LPAYLATS(1)PIPTEDQFFK;LPAYLAT(0.003)S(0.997)PIPTEDQFFK;LPAYLAT(0.02)S(0.979)PIPTEDQFFK;LPAYLAT(0.001)S(0.998)PIPTEDQFFK 238.12 7.509100000000001e-24 449994000.0 1948070.0 1810480.0 1631120.0 1470610.0 1448400.0 1936540.0 1883810.0 1649410.0 1885960.0 1846570.0 True False 1937581.8075709245 1870740.7323417296 1860767.5180508038 1656789.0752149576 1632845.1546606051 1802671.5479248206 1792682.9134469563 1772497.3497342707 1421190.42856926 1728720.3216718861 1.120818551896841 1.0821534917415052 1.076384360572109 0.9583904663147812 0.9445398044962195 1.0427780163892644 1.0369999652189028 1.0253233721577628 0.8221054676992477 1.0 20.721273053009806 3.8480225644639106 4.541786437488817 0.9846410147864878 1.0964580174004328 0.43195690006452436 0.06135760779212721 0.23700090096203236 7.896802558089417 0.016257814457184376 0.03045596539510134 7047.296833729798 -3.8480225644639106 0.111817002613945 LPDAYER ddPTM_BT-474_Trastuzumab_2h_R1 4 LPDAYER 7 0 P11413;P11413-3;P11413-2 P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ;;; 152.39 0.004227000000000001 1356010000.0 1280180.0 1560510.0 1416550.0 1431140.0 1389330.0 1424520.0 1395240.0 1265570.0 1537640.0 1387350.0 False True 1273287.653121369 1612450.6320017858 1615987.9271266777 1612322.1772619106 1566252.9402959272 1326046.285359386 1327746.910865603 1360013.2598342448 1158709.2253203865 1298808.1352299072 0.9803508451969922 1.241484856973397 1.244208350173773 1.241385954959781 1.2059155604370144 1.0209716503851873 1.0222810243104716 1.0471240693249149 0.8921327129778708 1.0 20.308756895570735 2.7089907458579208 5.699009460180494 1.004341814242292 1.1928753475033647 0.5594954876280572 0.0822415574031053 0.14280116893159575 14.57339641199211 0.026521912874073218 0.02556709878697142 511.6709325098676 -2.7089907458579208 0.1885335332610727 LPDLS(ph)PVENK ddPTM_BT-474_Trastuzumab_2h_R1 6 LPDLSPVENK 10 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 LPDLS(1)PVENK;LPDLS(1)PVENK;LPDLS(1)PVENK;LPDLS(1)PVENK;LPDLS(1)PVENK;LPDLS(1)PVENK 229.68 1.5815000000000002e-09 3774030000.0 6152680.0 5144860.0 4636370.0 4255770.0 4442160.0 5762370.0 5321550.0 5544540.0 7649240.0 5391250.0 True False 6119554.654507004 5316103.55496645 5289130.595949533 4794550.045646072 5007842.745254878 5364030.925059918 5064126.296204853 5958301.729403635 5764187.296564677 5047175.809318657 1.2124710700999164 1.0532828171254245 1.0479386484188153 0.9499471044368697 0.992206916194368 1.0627786959899927 1.0033584102330853 1.1805219303838705 1.1420619202370945 1.0 22.267044910530473 1.7465269146505473 24.999999999817703 1.1240240217215591 1.041234611443183 0.10254495102816952 0.07813273847645481 3.017651033599083 9494.914592154371 0.03607415586176831 0.020004916346542258 55.786217361479224 -1.7465269146505473 -0.08278941027837616 LPDNVTFEEGALIEPLSVGIHACR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPDNVTFEEGALIEPLSVGIHACR 24 0 Q00796;A0A6I8PIS1 Q00796 SORD Sorbitol dehydrogenase 0 ; 209.76 4.9217e-25 270370000.0 175711.0 226520.0 205597.0 207955.0 234090.0 248770.0 242050.0 210530.0 259080.0 243080.0 False True 174764.99149932756 234059.5812657682 234543.27051884044 234282.08167789332 263899.97393986525 231573.11544159031 230341.11677920583 226240.81764967827 195233.20549413734 227566.4262887416 0.7679735290898387 1.0285330093850835 1.0306584953847562 1.0295107476910093 1.1596612832730553 1.0176066795888639 1.012192881593806 0.9941748496881461 0.8579174383413697 1.0 17.795928201678944 4.739962393477985 24.597188943436418 1.0185861747635427 0.767973429453681 0.5367607365958363 0.06860309748344054 76.78516808515701 1347188.8403449303 0.01673453328523699 0.10557631793057931 54949.328995525706 -4.739962393477985 -0.2506127453098618 LPDS(ph)DDDEDEETAIQR ddPTM_BT-474_Trastuzumab_2h_R1 7 LPDSDDDEDEETAIQR 16 0 H3BRF9;Q96K21-2;Q96K21;Q96K21-4;H3BRM1;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR 425.66 4.485799999999997e-160 18917873000.0 699939.0 647293.0 678071.0 591493.0 604124.0 674200.0 739624.0 604252.0 675756.0 655462.0 True False 696170.6061945336 668837.7562081189 773537.5029012118 666375.9531528569 681055.6104765141 627594.14089609 703845.561481939 649344.3525694844 509224.9884664832 613629.8539907484 1.1345122823913807 1.0899693876664007 1.2605930071206646 1.0859575179060694 1.109880176212519 1.0227568571094197 1.1470197496169259 1.0582020225164508 0.8298569327335249 1.0 19.227009148210957 1.4209385555241736 4.89699023552635 0.9169484142960487 1.1186137541162788 0.5834017218659413 0.06874907754559746 0.13442867259932118 5.576611589502916 0.045894279726684604 0.016901221142343433 26.359584210554516 -1.4209385555241736 0.20166533982023016 LPDTALPTLQNGAAVTDLAWDPFDPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPDTALPTLQNGAAVTDLAWDPFDPHR 27 0 A0A0A6YYL4;P57737;P57737-3;P57737-2;P57737-4 A0A0A6YYL4 CORO7-PAM16;CORO7 Coronin;Coronin-7 0 98.967 0.0035817 81172000.0 32897.0 36525.0 37609.0 32298.0 37102.0 38181.0 49870.0 39375.0 44207.0 40605.0 False True 32719.886207200318 37740.71254517124 42904.02029671184 36386.92348841145 41826.719779216925 35541.63733840643 47457.59757809959 42313.362442198704 33312.77719345119 38013.55413631049 0.8607426206418918 0.9928225182480732 1.1286505898097536 0.9572091932770557 1.1003106846898092 0.934972752375635 1.2484388438903733 1.1131125043049064 0.8763394518175525 1.0 15.214226298070004 4.636259708856961 3.236893196617276 1.0577563254922984 0.8518849233217229 0.212260325516352 0.10403827522528819 0.38387890787918844 6.467727162530304 0.024956046074120733 0.1682345217792968 43277.25524098537 -4.636259708856961 -0.20587140217057542 LPEADDIQYPSMLLLTADHDDR ddPTM_BT-474_Trastuzumab_2h_R1 8 LPEADDIQYPSMLLLTADHDDR 22 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ;;;;;;; 331.6 8.969299999999995e-81 3861730000.0 1801723.0 2224310.0 2030870.0 2032870.0 1970780.0 2319150.0 2169550.0 1882640.0 2346870.0 2162490.0 False True 1792022.7235582431 2298344.813726213 2316798.843361513 2290231.1335651455 2221747.151271766 2158832.6191918836 2064600.5780141568 2023132.156652214 1768515.3349468375 2024478.0367991645 0.8851776561584986 1.1352777219356995 1.1443931725851308 1.131269933254576 1.0974419632551298 1.066365048150951 1.0198187090626227 0.9993351964691707 0.873566076193634 1.0 20.94911856088248 1.8482778315588073 1.5708340695129384 0.9423341429965446 1.086842855089117 0.3310941324876382 0.07646399316108939 0.4085537444045771 1.9036990288541378 0.05421325628927839 0.02322303471697756 70.51440270624225 -1.8482778315588073 0.14450871209257232 LPEASQS(ph)PLVLK ddPTM_BT-474_Trastuzumab_2h_R1 3 LPEASQSPLVLK 12 0 E7ESY4;Q13330-3;Q13330;H0Y4T7;F8W9Y9 E7ESY4 MTA1 Metastasis-associated protein MTA1 1 LPEAS(0.112)QS(0.888)PLVLK;LPEAS(0.082)QS(0.918)PLVLK;LPEAS(0.226)QS(0.774)PLVLK 142.45 0.00028306 223110000.0 764560.0 825350.0 828790.0 719040.0 735300.0 953460.0 832140.0 784250.0 1027950.0 916690.0 True False 760443.6939106009 852821.2758153888 945476.428028181 810070.390275167 828936.0965354485 887549.5544034209 791886.2091164993 842774.7173408078 774625.4963242962 858186.059382206 0.886105857345238 0.9937486941110658 1.1017149692559838 0.9439332897790524 0.9659165252954423 1.0342157678981097 0.9227442003504056 0.9820419571339897 0.902631181030762 1.0 19.710930940165955 2.2247461575462624 24.967281215868066 0.9527663697285824 0.9901008622817459 0.08076473359096825 0.05869529724580231 621.5343770241985 1123309.6582259117 0.021793723980689884 0.016181393294253568 167.78230542103185 -2.2247461575462624 0.037334492553163456 LPEDPLLSGLLDSPALK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPEDPLLSGLLDSPALK 17 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 158.2 7.8338e-09 95386000.0 158004.0 161956.0 148858.0 140413.0 141096.0 189825.0 202182.0 164989.0 218828.0 178436.0 False True 157153.3240198949 167346.60755553073 169815.9125030695 158189.2714031307 159063.73925848713 176702.84454998543 192401.684249756 177301.31697716608 164900.77154497118 167048.0617132546 0.9407671206006302 1.001787185311905 1.0165691883008259 0.9469686135878044 0.9522034414953409 1.0577964373708428 1.1517744191490353 1.0613790735358046 0.9871456744468586 1.0 17.349903717373696 2.711204849130272 10.653035377641723 1.064227263555499 0.9744605917837154 0.40040754995960537 0.04763060420135793 0.6908416323883395 266.33680176815903 0.015765988798290363 0.014975502192188185 514.2861741970524 -2.711204849130272 -0.08976667177178366 LPEEWSQWLGGSSWPGYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPEEWSQWLGGSSWPGYVR 19 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ; 271.64 5.7855999999999996e-39 702270000.0 80055.0 77204.0 76451.0 61822.0 82106.0 82740.0 85110.0 79138.0 82201.0 88765.0 False True 79623.9927749467 79773.6884691965 87214.6362759955 69648.65886124742 92561.7124196104 77020.3785490099 80992.90414822655 85043.67941462142 61943.664986967735 83099.94170446006 0.9581714636831472 0.9599728571760835 1.0495150115287577 0.8381312601752319 1.1138601366147831 0.9268403439189914 0.9746445362894831 1.023390361897896 0.7454116539247001 1.0 16.342559844478693 1.2753834561381703 24.998670480392594 0.8727043254289923 0.9818421950754685 0.1869219014732877 0.08995038079768478 213.50999643006642 144949.81754659483 0.05386715453335148 0.01966919253755441 18.853129737941483 -1.2753834561381703 0.1091378696464762 LPEEWSQWLGGSSWPGYVRPLPPAAIESPAVAAPAYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPEEWSQWLGGSSWPGYVRPLPPAAIESPAVAAPAYSR 38 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ; 207.46 6.486799999999999e-31 235540000.0 44039.0 64117.0 54294.0 49883.0 52303.0 53414.0 64060.0 57382.0 65265.0 62970.0 False True 43801.89891719287 66251.09558545503 61938.12326809204 56198.182685380765 58963.477025831045 49721.61590303139 60961.17306703543 61664.13621989196 49181.315256194575 58951.20068867066 0.7430196231034663 1.1238294523522279 1.0506677140504013 0.9533000520578205 1.0002082457527068 0.8434368651050558 1.0340955290966796 1.0460200216370263 0.8342716464067936 1.0 15.847233577147195 1.249606699084648 24.999787578127528 0.917135775479281 0.9836046198425012 0.035603317804347 0.11093269619804985 597.1772134588967 1351566.6921270574 0.07191916575025883 0.025723587388175206 17.76669713500028 -1.249606699084648 0.0664688443632202 LPEHCIEYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPEHCIEYVR 10 0 Q8TBC4;F8W8D4;Q8TBC4-2 Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit 0 ; 129.89 0.00029116 1285290000.0 936180.0 1243070.0 1102200.0 1230130.0 1160490.0 1158500.0 1119840.0 917650.0 1255130.0 1117390.0 False True 931139.710899376 1284444.833498316 1257380.1795058588 1385864.3318719298 1308271.5227368711 1078415.6218156626 1065669.0609957685 986129.7027322821 945820.0293803338 1046077.2135542908 0.8901252210012415 1.2278680931535786 1.2019955728063485 1.3248203038121185 1.25064527339403 1.0309139782822478 1.0187288731535504 0.9426930344670036 0.9041589063647512 1.0 19.9965579137394 2.5239718871610926 3.0700194345598995 0.9628780247717957 1.1904187444836325 0.4515296914715392 0.11088741834831875 0.23189339627655417 4.380052132217081 0.040442811028795204 0.03584140282418093 334.17340754484434 -2.5239718871610926 0.22754071971183676 LPESENLQEFWDNLIGGVDMVTDDDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPESENLQEFWDNLIGGVDMVTDDDRR 27 1 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 67.31 0.025029 607060000.0 16190.0 19651.0 14376.0 16788.0 17767.0 36994.0 19579.0 19788.0 30823.0 25110.0 False True 16102.834838878103 20305.071655719654 16400.015841567965 18913.359078687587 20029.522136740532 34436.69185450898 18631.888970956716 21264.681041428015 23227.08465703952 23507.45830224744 0.6850096097942918 0.8637714632797362 0.6976515976633695 0.8045684410244968 0.8520496720321993 1.4649262124275106 0.7925947897640387 0.9045929495233859 0.9880729919158842 1.0 14.520830938405386 2.9876574626574586 24.639602603296236 1.0108955505866888 0.7731902153201875 0.3563083620779589 0.16982648402015754 620.7101179203729 1239137.0853256865 0.05173448965727167 0.05755403190901753 971.9802997299256 -2.9876574626574586 -0.23770533526650128 LPETNLFETEETRK ddPTM_BT-474_Trastuzumab_2h_R1 3 LPETNLFETEETRK 14 1 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 ;; 224.33 5.1122e-12 1375010000.0 1103850.0 1015900.0 1003080.0 932640.0 951530.0 1183090.0 1129610.0 1085880.0 1584670.0 1174430.0 False True 1097906.994249264 1049713.6173754823 1144304.9450723438 1050712.1283742662 1072701.7053398283 1101305.7729942973 1074966.448770745 1166913.8795869143 1194149.3119900979 1099476.871919891 0.9985721594417117 0.9547391529414231 1.040772183842462 0.9556473221119489 0.9756473580628319 1.0016634284186556 0.9777071953261315 1.0613355400093734 1.086106804506848 1.0 20.06838582597961 1.726613524174408 6.807986942985102 1.0547160349155944 0.9862490130012965 0.46052028063683403 0.03088098215899719 0.09964708888721371 12.482773628635572 0.014342231632758487 0.007483010528952884 53.286049535833435 -1.726613524174408 -0.06846702191429788 LPFPIIDDR ddPTM_BT-474_Trastuzumab_2h_R1 8 LPFPIIDDR 9 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;;;;;;; 164.53 0.00014467 4047748000.0 1077046.0 1239088.0 1157868.0 1140015.0 1102703.0 1165944.0 1227019.0 1033310.0 1279245.0 1111278.0 False True 1071247.3040070604 1280330.2950354856 1320885.7500309267 1284340.7821116275 1243125.690817257 1085345.0356169548 1167663.4033022302 1110420.8392418616 963992.2107547784 1040355.2866270372 1.0296937188450102 1.2306663997320353 1.2696487123292317 1.2345213203804846 1.1949049587161968 1.043244600732294 1.1223698464473053 1.06734771622297 0.926599040872049 1.0 19.988644869538888 2.013562875371318 0.8779971449860192 0.9767860857282126 1.1988575301241815 0.5449452441833891 0.07430768274747056 0.4588276594503141 0.6546737170114376 0.06325117869254908 0.0313651822955913 103.1722437164424 -2.013562875371318 0.22207144439596893 LPGGELNPGEDEVEGLKR ddPTM_BT-474_Trastuzumab_2h_R1 5 LPGGELNPGEDEVEGLKR 18 1 O43809;H3BND3;H3BV41 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 ;;;; 197.1 3.015e-15 5369040000.0 3213870.0 3121760.0 2980750.0 2741890.0 2886750.0 3357160.0 3467690.0 3131050.0 4521290.0 3564410.0 False True 3196566.8810145226 3225665.894456229 3400413.690856545 3089012.992867687 3254360.501392226 3125087.431104591 3299944.5868377825 3364704.8501497433 3407078.661682063 3336926.302155071 0.9579375124197677 0.9666578169176265 1.019025708976693 0.9257060879267021 0.9752569300947637 0.9365167666682752 0.9889174312020602 1.0083245913991965 1.0210230473120385 1.0 21.67008839348615 1.9809691528560933 4.443957134397081 1.0087976718906757 0.9647252743969139 0.43193506180304597 0.02385024735323332 0.19903007869524303 9.465266549035592 0.010341259644589191 0.0064745775172104295 95.71260859625293 -1.9809691528560933 -0.044072397493761795 LPGMEYVDGDFQCHTFDS(ph)SNVE ddPTM_BT-474_Trastuzumab_2h_R1 3 LPGMEYVDGDFQCHTFDSSNVE 22 0 P24593 P24593 IGFBP5 Insulin-like growth factor-binding protein 5 1 LPGMEYVDGDFQCHTFDS(0.5)S(0.5)NVE;LPGMEYVDGDFQCHT(0.002)FDS(0.499)S(0.499)NVE;LPGMEYVDGDFQCHT(0.001)FDS(0.5)S(0.5)NVE 69.98100000000001 0.011586 156498000.0 114299.0 95990.0 96798.0 101748.0 79964.0 102516.0 86825.0 85123.0 122303.0 100033.0 True False 113683.62688381282 99184.96912281965 110426.31701670107 114629.28636754263 90146.94141623916 95429.31021670662 82624.94304629024 91475.3105058356 92163.064426237 93648.80829744006 1.2139356490553486 1.0591161908627398 1.1791534673455064 1.224033583037875 0.9626063914227446 1.0190125421950003 0.8822850450361667 0.9767909722385237 0.9841349409756058 1.0 16.514973015509362 3.227861846063035 24.998493823822432 0.9663139284600496 1.1619275932185824 0.7652198260439784 0.053705470435454754 97.27356810612997 227286.787040215 0.015324483008987654 0.018490504958596932 1689.9032689798705 -3.227861846063035 0.1956136647585328 LPGS(ph)PGLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 LPGSPGLSK 9 0 Q8N9U0;Q8N9U0-2 Q8N9U0 TC2N Tandem C2 domains nuclear protein 1 LPGS(1)PGLSK;LPGS(1)PGLSK;LPGS(1)PGLSK;LPGS(1)PGLSK 168.22 6.2298e-05 1360560000.0 4123000.0 4009310.0 3942570.0 3352970.0 3833430.0 4559270.0 3758440.0 3878250.0 4667090.0 3702630.0 True False 4100802.2261083657 4142757.4596709246 4497649.586567236 3777455.658212241 4321594.5879802555 4244098.396267153 3576629.8985649203 4167664.7083544657 3516948.2053019656 3466324.98341897 1.183040322452278 1.1951439866393494 1.2975268066559158 1.0897580798919757 1.2467367049115228 1.2243798306761864 1.031821861964354 1.2023294781332756 1.0146042919014084 1.0 21.724975489254383 1.3572206269966125 0.6646769559106975 0.9945916515960874 1.2087878540020411 0.478369646700041 0.07255839756066731 0.5677781896806681 0.5824143639072594 0.0663394210353704 0.029900705379799282 22.762535021788153 -1.3572206269966125 0.21419620240595372 LPHSSS(ph)SENIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPHSSSSENIK 11 0 F5H527;Q76I76;A0A3B3IS79;K7EKN7 F5H527 SSH2 Protein phosphatase Slingshot homolog 2 1 LPHSS(0.006)S(0.993)SENIK;LPHSS(0.002)S(0.997)S(0.001)ENIK 173.59 7.7277e-06 366290000.0 244460.0 334020.0 316930.0 331040.0 321130.0 378700.0 345280.0 346550.0 405660.0 418700.0 True False 243143.85452205935 345137.65378064645 361550.98919505684 372949.6300577037 362024.0020133663 352521.3603639114 328577.48730231053 372411.320745243 305690.52856550796 391978.2075328956 0.6202994193284437 0.8805021482008838 0.9223752296604774 0.9514550117595633 0.9235819620992183 0.8993391815904129 0.838254476876079 0.9500816973708659 0.7798661320727984 1.0 18.58041392276155 4.737950757255824 4.009455247925903 0.9065953196165376 0.5948564407023408 0.6843358457132589 0.05827533761051344 0.1231760057542123 4.175905040308991 0.013038169940686791 0.11168625722304654 54695.39426722291 -4.737950757255824 -0.3117388789141968 LPHVLLLQLGTTFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPHVLLLQLGTTFFK 15 0 O43809;H3BND3;H3BV41 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 ; 182.57 5.412e-07 162455000.0 207730.0 220660.0 195405.0 219840.0 172727.0 250600.0 282290.0 242790.0 311700.0 270580.0 False True 206611.60476097272 228004.53470821312 222916.32550929222 247671.7214592968 194722.75961686167 233276.6118489468 268634.554247478 260908.22266263896 234885.71156601314 253311.3527448072 0.8156428937044875 0.9000959974261838 0.8800092182755987 0.9777363658422688 0.7687091695926899 0.9209086340632986 1.060491570301264 1.02999024653066 0.9272608946297146 1.0 17.950552210711887 2.423585893972414 6.257675449418411 1.0100732772644259 0.8738070443724679 0.5320605239443852 0.059926217169974365 0.15057812228216585 12.71674615267401 0.020521649996880165 0.017182367259620048 265.20755638225097 -2.423585893972414 -0.13626623289195794 LPIGDVATQYFADR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPIGDVATQYFADR 14 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 127.17 0.00018869 909520000.0 158929.0 229930.0 188408.0 194459.0 220960.0 191455.0 215190.0 173409.0 196068.0 251830.0 False True 158073.343922672 237583.0810543798 214934.2087283069 219077.4894616694 249097.94626747275 178220.16648659293 204780.43759437022 186349.66013305998 147749.6685765962 235757.99379748988 0.670489858589707 1.0077413589566666 0.9116730477140467 0.9292473435698277 1.056583245620259 0.7559453811762562 0.8686044290412117 0.7904277480963364 0.6267005678013591 1.0 17.846947163328604 2.70412274389284 24.989234170726526 0.8002227942579625 0.9208815354071788 0.1447794153055757 0.1286715808429849 1060.185547216763 769304.1215191066 0.03962707946725348 0.03736265627750253 505.9676425503635 -2.70412274389284 0.12065874114921626 LPIGDVATQYFADRDMFCAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPIGDVATQYFADRDMFCAGR 21 1 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 134.33 7.6792e-06 385410000.0 86563.0 134699.0 112599.0 165979.0 139612.0 116467.0 147035.0 98938.0 179101.0 153294.0 False True 86096.95442605349 139182.37478773514 128451.96047194717 186991.92438178987 157390.76065484434 108415.91042382806 139922.3553217541 106321.2559569841 134963.9583804445 143510.6456784037 0.5999342698170986 0.9698400709563535 0.8950692115189706 1.3029829494379417 1.096718364765391 0.755455526740363 0.9749963472069474 0.7408597143046923 0.9404456215944309 1.0 17.130798235015664 0.9803101581115403 23.655804189328133 1.0000000288739685 0.9200801653437698 0.017710324282319667 0.1859160065216446 4570.02847085063 5490546.754578646 0.18296683325229468 0.04574170836188331 9.556748523222575 -0.9803101581115403 -0.07991986353019875 LPISDS(ph)PPDTQEIHVIEQEKLEAQDSGEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPISDSPPDTQEIHVIEQEKLEAQDSGEEAR 31 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 LPIS(0.002)DS(0.996)PPDT(0.002)QEIHVIEQEKLEAQDSGEEAR 112.34 5.1937e-05 48216000.0 34344.0 32412.0 32603.0 29528.0 27082.0 43922.0 43736.0 32663.0 49432.0 37932.0 True False 34159.09571997709 33490.81382653224 37193.21900964389 33266.24177242597 30530.732172409906 40885.77552126676 41620.322592255114 35100.47891935328 37250.145954864136 35511.147284780935 0.9619259959707556 0.9431070631977427 1.0473674283563303 0.9367830756254653 0.8597506559720335 1.1513504532361094 1.1720354247775149 0.9884355083733479 1.0489705009003887 1.0 15.115984350872177 2.7338862454796997 24.991521542435837 1.0728620844328667 0.9541144574882625 0.442283666781198 0.0686196245608378 413.9605024271961 2213229.828528059 0.023061371481416112 0.02241397113515266 541.8589429905319 -2.7338862454796997 -0.11874762694460417 LPIVNEDDELVAIIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPIVNEDDELVAIIAR 16 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 114.82 0.0012886 24436000.0 6303.0 6507.5 5792.0 4313.3 5856.3 6232.8 5966.4 4635.6 7089.7 7007.8 False True 6269.065348329133 6724.098203633178 6607.463255033506 4859.363337747388 6602.065091990406 5801.941206433027 5677.782438138625 4981.532011099843 5342.538432112808 6560.556204320572 0.9555691854603009 1.0249280692397549 1.0071498588308783 0.7406938049775669 1.0063270378878086 0.8843672740143671 0.8654422371077958 0.7593154994723108 0.8143423005193345 1.0 12.679602416456495 3.77413898539845 24.866222479621943 0.8576388708046526 0.9987870004203581 0.3244886548340028 0.08425524817459884 608.4856329298842 425277.1431753485 0.021699790446188156 0.039118085794841766 5944.823778194635 -3.77413898539845 0.14114812961570544 LPKPPTDPLGAVFSPPQAS(ph)PPQPSHGLQSCR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPKPPTDPLGAVFSPPQASPPQPSHGLQSCR 31 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 LPKPPTDPLGAVFSPPQAS(1)PPQPSHGLQSCR;LPKPPTDPLGAVFSPPQAS(1)PPQPSHGLQSCR 179.5 2.1525e-18 1544930000.0 802570.0 839410.0 786690.0 751590.0 806650.0 1023130.0 1000120.0 934630.0 1085890.0 1104530.0 True False 798249.0522939102 867349.254415939 897449.1139679402 846741.2169377402 909372.0961108651 952403.4312889589 951740.3747705831 1004376.8365549765 818286.9596805201 1034037.9497642906 0.7719726848283193 0.8387982806759188 0.8679073279394767 0.8188686083820765 0.8794378352536838 0.9210526862249685 0.920411455873097 0.9713152566440377 0.7913509942909243 1.0 19.97985770365406 2.9975918118188383 2.27829913197323 0.9241151983916328 0.8274464599417571 0.39955423092743103 0.05540880787398557 0.3098324462710295 3.2327749272189243 0.017581943289052288 0.020516896808300145 994.4702872512707 -2.9975918118188383 -0.09666873844987567 LPLDINPVVHPHGHIFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPLDINPVVHPHGHIFK 17 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 ; 82.529 0.0024269 795150000.0 1023260.0 1156740.0 1053500.0 1053670.0 1072280.0 1246430.0 1260870.0 268090.0 1359050.0 847910.0 False True 1017750.8818548745 1195241.391635905 1201823.6428138455 1187064.513964781 1208828.5020985056 1160267.2278806192 1199876.901108851 288096.23713343637 1024130.3378369907 793795.657867726 1.2821320849609223 1.50572931432572 1.5140214372577372 1.4954283286878187 1.5228459492278281 1.4616699101092339 1.5115689903519127 0.36293501265465883 1.2901687325778324 1.0 19.598408145127 1.7659886458697756 24.99999999870385 0.8259621500444294 1.476149718332512 0.5851048893602667 0.22453053461113817 10.734544256996639 9790.260188033672 0.09534842751167526 0.052881115006061206 58.34298509712636 -1.7659886458697756 0.6501875682880827 LPLFPEPLHVFAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPLFPEPLHVFAPR 14 0 P26358;P26358-2;P26358-3;K7ENW7 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 155.42 5.8502e-06 144430000.0 107120.0 137740.0 137690.0 121240.0 104080.0 133730.0 130010.0 113860.0 158300.0 119390.0 False True 106543.27782215083 142324.59263441185 157075.55517706557 136588.9715689826 117333.97106950832 124485.55986655904 123720.91961356973 122356.81136936504 119289.08611132456 111770.42798507838 0.9532331560578315 1.2733653722200342 1.405340911802141 1.2220492846928848 1.0497765212563441 1.1137611451499332 1.1069199773493466 1.0947154231681029 1.067268760277539 1.0 16.770179007495546 3.2503458844816024 21.205392966475426 1.0821934697626352 1.2314770019340617 0.2787154871153944 0.10921808814612018 45.263397662022044 81439.39159412007 0.030600326435992604 0.04095155878830101 1779.6962464848614 -3.2503458844816024 0.14928353217142654 LPLIFHLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPLIFHLGR 9 0 P34059 P34059 GALNS N-acetylgalactosamine-6-sulfatase 0 125.96 0.0015738 0.0 33733.0 53235.0 44831.0 45587.0 34941.0 41334.0 43580.0 38160.0 53080.0 37501.0 False True 33551.385276088615 55006.89479376293 51142.81512196254 51358.30952585957 39390.529238467425 38476.67786977005 41471.86890823299 41007.69297255372 39999.145235559765 35107.65407377861 0.9556715240950163 1.5668063345436334 1.4567425956313143 1.4628806988336578 1.121992633164505 1.0959626578555048 1.1812771317924007 1.168055629304544 1.1393283399540652 1.0 15.099497976759299 3.2284562347769574 24.944680188880742 1.1321757117360183 1.3821323121134317 0.35556486524789477 0.15833360581098607 206.80360062993984 510535.1963904528 0.043991226660949234 0.053154088733203535 1692.217705734722 -3.2284562347769574 0.2499566003774134 LPLLPHEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPLLPHEVR 9 0 O43681 O43681 ASNA1 ATPase ASNA1 0 ; 122.13 0.00059431 544040000.0 197805.0 246250.0 243020.0 211288.0 193189.0 229130.0 215450.0 182849.0 306580.0 230090.0 False True 196740.0398582014 254446.28238873128 277235.10363229294 238037.0391361535 217790.47402908583 213290.78241400336 205027.86040107402 196494.12086840865 231027.46696152832 215405.4592100405 0.9133475102242484 1.1812434249432011 1.2870384281299145 1.105065024856427 1.011072211576215 0.9901828077905159 0.9518229535731155 0.9122058539695991 1.0725237317975997 1.0 17.7166952882718 3.2116059335881175 3.159069174411042 0.9740591316669426 1.141069316229186 0.31336007672797517 0.09494133062455117 0.25888893625581744 5.325714018124915 0.02880825218737911 0.037279220054194796 1627.8183264587765 -3.2116059335881175 0.16701018456224348 LPLLPPES(ph)PGPLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LPLLPPESPGPLR 13 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR 182.37 1.1812e-05 2298720000.0 820476.0 844068.0 857057.0 901959.0 722540.0 856284.0 797302.0 650988.0 817394.0 758687.0 True False 816058.6483794533 872162.2931301194 977723.1759270104 1016146.9169200615 814551.1861698932 797091.102555721 758733.4562705822 699568.0302100837 615958.2012184456 710266.9461153796 1.1489463966226698 1.227935916066747 1.376557337032806 1.4306549424517259 1.1468240083884929 1.1222415838371806 1.0682370345688723 0.9849367678394569 0.867220704253899 1.0 19.438001822231378 2.4034157074962246 1.1902637561661664 0.9485915638806355 1.2893371236571753 0.7192921586581054 0.08733936899136314 0.26437733164715405 0.7470741651562068 0.05549206165446128 0.03698485717970054 253.17202043392038 -2.4034157074962246 0.34074555977653986 LPLPDDEHDLS(ph)DRELELEDSAALSDLHWHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPLPDDEHDLSDRELELEDSAALSDLHWHDR 31 1 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;H0Y325;Q8NF91-2;Q8NF91-8;Q8NF91-11;Q8NF91-3;Q8NF91-9;A0A5F9ZH87;A0A5F9ZHE1;Q5JV20;F8WAI0;H0Y326;A0A5F9ZHB2 Q8NF91 SYNE1 Nesprin-1 1 LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR;LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR 266.02 2.9999e-59 100119000.0 18374.0 26831.0 26237.5 23942.9 23750.2 28174.5 30474.3 12664.1 35414.0 25693.6 True False 18275.07642554332 27724.053615317982 29931.51193956175 26974.068685079164 26774.647191535696 26226.863130639114 29000.141685868843 13609.159448996787 26686.69422328773 24053.81245060234 0.7597579994054409 1.1525845922451154 1.244356253339467 1.1214051302875148 1.1131144905416115 1.0903412165742714 1.2056359774744414 0.565779727307053 1.1094579821012722 1.0 14.553977954113268 1.7692312924936917 24.999999999981906 0.8477327765702977 1.1070535643251427 0.20468677052471984 0.17971166243389292 30.136663031260255 24577.76629699362 0.07923765101518893 0.04395115542008862 58.78023154450371 -1.7692312924936917 0.259320787754845 LPLPS(ph)PALEYTLGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 LPLPSPALEYTLGSR 15 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 LPLPS(0.999)PALEYTLGSR;LPLPS(1)PALEYTLGSR;LPLPS(1)PALEYTLGSR 144.18 4.4903e-06 338102000.0 128708.0 137517.0 126132.0 122695.0 107267.0 142094.0 119347.0 117397.0 153923.0 124113.0 True False 128015.05042880327 142094.1702142179 143890.28924100258 138228.17441979825 120926.81662867947 132271.37623329725 113573.72966018558 126157.76026988712 115990.73911252935 116192.00208151463 1.101754407665634 1.222925568616432 1.2383837670690638 1.1896530909487566 1.0407499179146869 1.1383862388437211 0.9774659841088529 1.0857697432683964 0.9982678414574173 1.0 16.82615124064528 3.24170281469979 21.03182441852638 1.047314859731593 1.1942473950631014 0.6296147808245647 0.055394550400755894 6.946353681629712 46489.296280625036 0.014980992256478965 0.0193941877050968 1744.6279051794766 -3.24170281469979 0.1469325353315083 LPLQES(ph)EEEEREER ddPTM_BT-474_Trastuzumab_2h_R1 2 LPLQESEEEEREER 14 1 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497 SP100 Nuclear autoantigen Sp-100 1 LPLQES(1)EEEEREER;LPLQES(1)EEEEREER 216.3 3.7421e-12 1849040000.0 333650.0 366070.0 313410.0 313670.0 294090.0 342420.0 323360.0 292010.0 314500.0 315660.0 True False 331853.66547199996 378254.4186560123 357535.4037914455 353380.58983869076 331540.6182920036 318749.31136997783 307717.84144484205 313801.2689967353 236995.68908409096 295514.30854987784 1.1229698727633306 1.2799868152312135 1.2098751006200417 1.1958154973028863 1.1219105427378828 1.0786256439971276 1.0412959120485514 1.0618818105173777 0.8019770353830095 1.0 18.172868460589832 2.322988258790295 0.7570006768282272 0.9361971629299629 1.215331070699306 0.6880071427129667 0.07023163537505604 0.37852965025823143 0.42310340319495515 0.054859153795726145 0.03624840793985407 210.3721564602341 -2.322988258790295 0.279133907769343 LPLQFEWRVSEQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPLQFEWRVSEQHR 14 1 Q6ZU64 Q6ZU64 CCDC108 Coiled-coil domain-containing protein 108 0 55.31399999999999 0.086254 140350000.0 429890.0 254770.0 119540.0 93607.0 96664.0 120530.0 116430.0 15030.0 355690.0 45750.0 False True 427575.5200052691 263249.86543828255 136370.19293969346 105457.63660225806 108973.58742758413 112198.04479710126 110797.83609420747 16151.614920793565 268034.9655018134 42830.19583145441 9.98303910838667 6.146361470636854 3.1839731360635866 2.462226346506924 2.544316814623438 2.619601489533775 2.586909397524579 0.37710812680739253 6.258084052582572 1.0 15.386340653192653 4.605105742901746 1.4952029451885032 2.373162841736438 11.870305796069083 0.7211457280514837 1.454574215231236 0.42065465888039066 1.0633430122621432 0.3776294551367386 5.494408540478926 40281.51006243969 -4.605105742901746 9.497142954332645 LPLQLDDAVRPEAEGEEEGR ddPTM_BT-474_Trastuzumab_2h_R1 8 LPLQLDDAVRPEAEGEEEGR 20 1 P14868;P14868-2;C9J7S3;C9JLC1 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ;;;;;;; 276.79 1.3438999999999999e-44 16537320000.0 2905100.0 3473320.0 3314190.0 3423560.0 3568550.0 3751750.0 3665760.0 3044380.0 3773920.0 3700230.0 False True 2889459.2643869505 3588927.3565337197 3780799.144544114 3856982.344974483 4022983.6900470178 3492400.353169543 3488433.1842368976 3271567.0946484 2843887.9839371433 3464078.153473719 0.8341206913849358 1.0360411045965587 1.0914300939639 1.1134224385517302 1.1613432237413113 1.008175970183416 1.0070307394014064 0.9444264677942464 0.8209653067686538 1.0 21.7240400485681 1.814688280614248 2.0603110976092074 0.906441027445998 1.050849899495932 0.2524963681425171 0.09121248209910869 0.39962014737496465 3.2638442877415774 0.060546531803768906 0.027113912618149577 65.26619295933352 -1.814688280614248 0.14440887204993413 LPLS(ph)PPLVEDSAFEPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPLSPPLVEDSAFEPSR 17 0 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 LPLS(1)PPLVEDSAFEPSR 145.55 4.933399999999999e-07 25332000.0 15715.0 13707.0 14968.0 13089.0 16653.0 14724.0 14810.0 14811.0 14077.0 9388.9 True False 15630.39218610064 14163.229208943523 17075.364295811723 14746.066057954586 18773.660839935845 13706.164536567827 14093.583720305895 15916.272028734087 10607.911972135917 8789.6923637583 1.7782638503422423 1.6113452692999148 1.942657784727136 1.677654398776871 2.1358723449006574 1.5593451931356719 1.6034217282070784 1.8107882927006789 1.2068581621666883 1.0 13.10159695707888 1.1353577768614795 3.711328622344311 1.0077109859398863 1.7647417844949442 0.7216024932961929 0.16622779101703045 0.10626975679501834 2.548758842212465 0.15137796011763463 0.03970686343535902 13.65707759273654 -1.1353577768614795 0.757030798555058 LPLVPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 LPLVPESPR 9 0 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR 162.36 6.6963e-05 973170000.0 360771.0 392875.0 327321.0 321538.0 309211.0 336222.0 368652.0 313812.0 418388.0 358259.0 True False 358828.64902142633 405951.6068770475 373404.9516748658 362244.6778319657 348587.1880128146 312979.7645214549 350818.89437259984 337230.2449450477 315281.88351197017 335394.60389903904 1.0698700719986582 1.210370119726934 1.1133302305223391 1.080055175667075 1.0393345151067095 0.93316875370979 1.0459884872751377 1.0054730786502495 0.9400326655430532 1.0 18.3554999522755 3.3576415366269745 1.762351793408985 0.9918048410402788 1.1401205094786202 0.6644958339308696 0.0452365645069577 0.20228278435975736 1.2863665512885858 0.013921067223164815 0.021671224966884402 2278.4606714948745 -3.3576415366269745 0.14831566843834143 LPLVPES(ph)PRR ddPTM_BT-474_Trastuzumab_2h_R1 7 LPLVPESPRR 10 1 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR 97.957 0.0034941000000000004 2304775000.0 1355383.0 1497854.0 1409243.0 1381000.0 1238919.0 1440669.0 1450742.0 1213155.0 1864981.0 1453423.0 True False 1348085.7685252065 1547709.1649181352 1607652.1650402588 1555834.458402879 1396687.9910017687 1341078.943000043 1380564.067087375 1303686.7863762667 1405381.4220150614 1360664.2998019652 0.9907555954260067 1.137465843076351 1.181520059925318 1.1434374067353126 1.0264750763322346 0.9856060331672017 1.0146250381437258 0.9581252235147265 1.0328641842220776 1.0 20.37587974141931 3.114957942397316 4.502478905785907 0.9949667974779609 1.1195020428246312 0.5438184964142709 0.049765279289554605 0.15511215945134604 5.403861837682767 0.014910294252121275 0.01806994614516285 1303.0405843164574 -3.114957942397316 0.12453524534667026 LPLVTPHTQCR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPLVTPHTQCR 11 0 P62191 P62191 PSMC1 26S protease regulatory subunit 4 0 152.54 3.2898e-05 334890000.0 202590.0 223820.0 247160.0 222730.0 207940.0 216700.0 194140.0 202260.0 270780.0 220490.0 False True 201499.27794986515 231269.7133979529 281957.9796467682 250927.5951629783 234419.926443059 201720.03905693055 184748.7065131795 217353.66825546924 204049.89726610517 206418.13942901368 0.9761704010473358 1.1203943318047664 1.3659554360227741 1.2156276374599881 1.1356556506686033 0.9772398860629262 0.8950216634265992 1.0529775573828202 0.9885269668186165 1.0 17.655210230635923 2.8223783863415854 3.9699549330304738 0.9839389180060558 1.1792059225132179 0.4628060210747692 0.09707580332170943 0.21959767645686518 6.47468573567299 0.03259792072913172 0.03443261995381138 664.3216196681501 -2.8223783863415854 0.19526700450716206 LPNFGFVVFDDSEPVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPNFGFVVFDDSEPVQK 17 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 93.348 0.007175 21097000.0 50070.0 48626.0 43989.0 39994.0 40542.0 56053.0 48137.0 53541.0 59159.0 54755.0 False True 49800.42868329994 50244.48701496227 50182.26884075776 45057.23629932281 45704.783388739495 52178.188044569186 45808.42940880247 57536.50129568916 44580.05713998645 51260.489021886 0.9715168472551505 0.9801796271102693 0.9789658623688141 0.8789856897402076 0.8916181694877225 1.0179026583669806 0.8936401170352523 1.1224337183190658 0.8696767820719131 1.0 15.645559621465802 LPNFGSHVLTPAEMEAFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPNFGSHVLTPAEMEAFK 18 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 132.59 4.0279e-06 0.0 148590.0 154430.0 149230.0 129990.0 130060.0 185930.0 184280.0 106260.0 185250.0 138680.0 False True 147790.0079499009 159570.10919509374 170240.2868695872 146446.7206718252 146622.3700739841 173077.09673214168 175365.6723820371 114189.66077734694 139597.61972282315 129829.32367007855 1.1383407366849105 1.2290760260031262 1.3112622176342899 1.1279941736735428 1.1293470991698296 1.333112519109813 1.3507400903333304 0.8795367452388875 1.0752395204458411 1.0 16.986256746336718 1.7342356305085267 13.304328832999094 0.9848100819447263 1.2303880218667136 0.6137257811650882 0.08959536926460247 0.05176813124448755 63.91377619647236 0.042630677679833355 0.023434043768441663 54.22950378123523 -1.7342356305085267 0.2455779399219873 LPNGEPS(ph)PDPGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPNGEPSPDPGGK 13 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 LPNGEPS(1)PDPGGK;LPNGEPS(1)PDPGGK 129.77 0.00015714 412180000.0 966110.0 837110.0 757250.0 735350.0 740350.0 955450.0 861100.0 863670.0 1084880.0 856020.0 True False 960908.5711049108 864972.7003063195 863864.2178650071 828445.234602866 834629.1841017525 889401.9903873757 819445.3032785542 928121.4410273955 817525.8606472127 801388.0707244066 1.1990552470244624 1.0793431196504288 1.077959916578401 1.0337628732781128 1.041479421258789 1.1098268403014906 1.0225324449087756 1.1581423219694669 1.0201372974122493 1.0 19.61214150874404 7.999995808570023 0.009742972528689971 6.001311664974366e-07 2.2952246983512343 0.2606762177916604 0.052828542335316676 23441.11165179616 17.65463968055084 1798.3755971137703 2400.9749919399055 99999034.89223878 -7.999995808570023 2.295224098220068 LPNGLGGPNGFPKPTPEEGPPELNRQS(ph)PNSSSAAASVASR ddPTM_BT-474_Trastuzumab_2h_R1 4 LPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSAAASVASR 40 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 LPNGLGGPNGFPKPTPEEGPPELNRQS(1)PNSSSAAASVASR;LPNGLGGPNGFPKPT(0.002)PEEGPPELNRQS(0.839)PNS(0.092)S(0.05)S(0.012)AAAS(0.002)VAS(0.002)R;LPNGLGGPNGFPKPTPEEGPPELNRQS(1)PNSSSAAASVASR;LPNGLGGPNGFPKPTPEEGPPELNRQS(1)PNSSSAAASVASR 249.92 7.395599999999997e-52 4194220000.0 1471361.0 1465563.0 1343577.0 1371604.0 1349695.0 1659959.0 1734359.0 1440394.0 1963238.0 1765335.0 True False 1463439.3558595758 1514343.3785034574 1532740.963019363 1545248.9257662748 1521570.6579809757 1545209.9414531786 1650461.4292752193 1547883.5144525282 1479424.3009414051 1652669.808920667 0.8855001452560722 0.9163012298823632 0.927433268730414 0.9350016061438509 0.9206743233088344 0.9349780174554839 0.9986637502339987 0.9365957471344061 0.8951723405098047 1.0 20.656367083055056 7.9999081604671725 0.0115896263452991 1.7454532668568505 4.7029194184693295e-05 0.40745162207687136 0.027678843364310344 9597.865269922748 8.594924460907327 544.4220416876884 767.7391872679599 99978855.4018617 -7.9999081604671725 -1.7454062376626658 LPNNSSRPST(ph)PTINVLESK ddPTM_BT-474_Trastuzumab_2h_R1 4 LPNNSSRPSTPTINVLESK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 LPNNS(0.002)S(0.002)RPS(0.033)T(0.963)PT(0.001)INVLESK;LPNNSSRPS(0.026)T(0.971)PT(0.003)INVLESK;LPNNSSRPS(0.038)T(0.962)PTINVLESK;LPNNS(0.001)S(0.005)RPS(0.094)T(0.899)PTINVLESK 213.2 7.4832e-17 2753800000.0 1944830.0 1959230.0 1832750.0 1788180.0 1817970.0 2344620.0 2316130.0 2192580.0 2819890.0 2400860.0 True False 1934359.2513709266 2024441.7861704535 2090785.2694514247 2014563.404653776 2049477.7035475965 2182541.9380418123 2204089.943424179 2356201.4532956434 2124965.894090101 2247635.0593203395 0.8606198071834028 0.9006986155406487 0.93021563299678 0.8963036042261052 0.9118373977345487 0.9710392837090686 0.9806262517059474 1.0483025006773712 0.9454230059628398 1.0 21.09997637852657 2.615942299165821 1.8263231044226051 1.0036264047031611 0.8986005093316705 0.7113361314288986 0.028639163813519077 0.17996204069355343 1.1985206884971469 0.011517416820764317 0.010293122979293799 412.99262769810343 -2.615942299165821 -0.10502589537149065 LPPEEASPYVVDHGESGPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPPEEASPYVVDHGESGPLR 20 0 P53992;G5EA31 P53992 SEC24C Protein transport protein Sec24C 0 ; 202.6 1.1444e-21 535620000.0 56071.0 84695.0 76644.0 74832.0 72038.0 60238.0 71628.0 65635.0 93590.0 76914.0 False True 55769.11996607374 87514.02187579143 87434.80899840944 84305.72352730221 81211.61229732164 56073.88884499948 68163.07999446802 70533.01698777672 70525.99854174898 72005.2826706116 0.774514284197588 1.2153833528593256 1.2142832547214661 1.1708269226989776 1.1278563083881556 0.7787468747468108 0.9466399889891447 0.9795533656944343 0.9794558944288906 1.0 16.135815133369945 2.782545420589561 24.87740027032044 0.9401128195738192 1.117171504504543 0.2756739936828869 0.13124587445360525 537.2860556232681 303882.9687905199 0.03967437571857888 0.04208084063316081 606.1015862088877 -2.782545420589561 0.17705868493072374 LPPGEYVVVPSTFEPNKEGDFVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPPGEYVVVPSTFEPNKEGDFVLR 24 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 174.7 2.3531e-12 1479150000.0 794980.0 847670.0 813540.0 736740.0 781770.0 896500.0 930730.0 884990.0 1185780.0 922820.0 False True 790699.9160105819 875884.1835226645 928079.3605835573 830011.208460347 881323.77558618 834527.0651340019 885707.0341661241 951032.4476881635 893560.407637943 863924.8375340486 0.9152415599805223 1.0138430398907758 1.0742593802866331 0.9607446995383264 1.0201394117823888 0.9659718402309644 1.0252130691070878 1.1008277646036329 1.0343034125381614 1.0 19.720546276138283 1.9978134769581262 24.486629845325737 1.0579402156253332 0.996282128374482 0.19770739848310426 0.046327435118081295 84.46293771096177 945902.8958068019 0.017177094523429418 0.012476567910863644 99.49779972728084 -1.9978134769581262 -0.0616580872508512 LPPQSSGVDT(ph)SPCPNSPVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPPQSSGVDTSPCPNSPVFR 20 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 LPPQSSGVDT(0.853)S(0.138)PCPNS(0.009)PVFR 136.66 5.5729e-05 104240000.0 46512.0 80567.0 78511.0 89946.0 88347.0 65080.0 57376.0 43178.0 51288.0 55075.0 True False 46261.58455996898 83248.62389122005 89564.66637015472 101333.1543776288 99597.46677630526 60581.172781841444 54600.50368239507 46400.16161344141 38648.75962398999 51560.066347920256 0.8972367150926872 1.6145949721916522 1.7370936989449284 1.9653418149978041 1.9316784060019476 1.1749630493694092 1.0589688406131668 0.8999243969226005 0.749587080885301 1.0 15.65396649972213 2.5031160721304744 3.4469967002169497 0.9280077426729391 1.651673377493156 0.5728026885049446 0.28643902158777446 0.17962716372965543 4.454799188460932 0.10657719597271503 0.09393571826029984 318.5048663060621 -2.5031160721304744 0.723665634820217 LPPS(ph)SPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPPSSPQK 8 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LPPS(0.5)S(0.5)PQK 67.207 0.06261599999999999 441390000.0 428090.0 418420.0 409150.0 346880.0 255600.0 379560.0 400650.0 330350.0 679570.0 416860.0 True False 425785.2110052703 432346.85675976926 466754.7636044471 390794.9724335924 288149.1449401072 353321.9105881343 381269.02886836947 355002.39448331046 512099.0792714647 390255.63790819887 1.0910417932397152 1.107855504861333 1.1960231147621327 1.0013820031615288 0.7383599798445178 0.9053601697645363 0.9769725068214303 0.9096662802519687 1.3122144295374087 1.0 18.574059948980665 3.5699559859953434 6.240480401877614 0.9552242754644568 1.1269574630263275 0.20365939784826903 0.13715456343573704 0.3423966778255061 19.030635284233174 0.036819063976730335 0.05718645889287529 3714.9757739914285 -3.5699559859953434 0.17173318756187073 LPPSS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPPSSPQK 8 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LPPS(0.034)S(0.966)PQK 90.827 0.013553 718330000.0 329880.0 314140.0 305550.0 255100.0 223210.0 289830.0 306780.0 242810.0 472350.0 302570.0 True False 328103.96273311356 324595.95999836 348568.7841117898 287395.6338440076 251634.4704306776 269794.734286434 291939.87938659283 260929.71516419732 355945.6716657244 283259.72355679044 1.1583149154183663 1.1459305118374237 1.230562466611691 1.0146011237859165 0.8883524536103972 0.9524641586834817 1.0306438053416447 0.9211677251103573 1.2566053062406568 1.0 18.111765955235946 3.6712655893554897 6.581738731376878 0.9946209118182915 1.174664873397195 0.38724259193326915 0.09638757694015172 0.22011077216244063 17.76528862938022 0.025089751457987957 0.03921634323435385 4691.001689433427 -3.6712655893554897 0.18004396157890346 LPPVLSHPIFDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPPVLSHPIFDNR 13 0 Q04206;Q04206-4;Q04206-2;A0A087X0W8;E9PKH5;Q2TAM5;Q04206-3;A0A087WVP0;E9PKV4;E9PQS6;E9PI38 Q04206 RELA Transcription factor p65 0 ; 200.21 1.1171e-07 1605450000.0 1151380.0 1346070.0 1287230.0 1245650.0 1258110.0 1252030.0 1341770.0 1190650.0 1461180.0 1296970.0 False True 1145181.0980103442 1390873.126233501 1468460.795196268 1403349.1622806299 1418322.8510978024 1165480.113061602 1276863.45904084 1279502.3489981946 1101091.7678088779 1214196.2642081175 0.9431597936575895 1.1455093111661068 1.2094097457580126 1.1557844507089432 1.1681166322998149 0.9598778611147453 1.051612080089534 1.053785443684155 0.9068482586108063 1.0 20.211570208804268 2.7416751080247725 24.997789414714564 1.0071251468694575 1.1320357412340476 0.4059068368655069 0.07759061394937093 300.99878223417284 2415908.758324247 0.02458204342326607 0.02507490501333132 551.664589329819 -2.7416751080247725 0.12491059436459007 LPQT(ph)SDDEKKDF ddPTM_BT-474_Trastuzumab_2h_R1 1 LPQTSDDEKKDF 12 2 Q9GZT3-2;Q9GZT3 Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial 1 LPQT(0.5)S(0.5)DDEKKDF 75.316 0.019507 0.0 399420.0 265520.0 236850.0 192520.0 269410.0 636030.0 317720.0 279480.0 660050.0 397450.0 True False 397269.5670997341 274357.6726897705 270196.42126289476 216893.0122604797 303717.76658182405 592062.7431535744 302350.6697917342 300336.2167706841 497389.52171686525 372084.40072593594 1.0676867031368742 0.7373533320786876 0.7261697097103293 0.5829134783326628 0.8162604129312363 1.5912054953082182 0.8125862551664317 0.8071722872142147 1.3367653165423201 1.0 18.50527038259177 2.9732896539008826 24.961813641437978 1.0643732023665704 0.7628165530139108 0.29102921170048757 0.24753684714237395 1037.7785968131168 969843.4239866497 0.07772765555702625 0.08268164102385114 940.350270668042 -2.9732896539008826 -0.3015566493526596 LPQTS(ph)DDEKKDF ddPTM_BT-474_Trastuzumab_2h_R1 2 LPQTSDDEKKDF 12 2 Q9GZT3-2;Q9GZT3 Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial 1 LPQT(0.134)S(0.866)DDEKKDF;LPQT(0.155)S(0.845)DDEKKDF 140.22 4.685e-05 802570000.0 976190.0 604690.0 610540.0 457050.0 654610.0 1646370.0 796230.0 674710.0 1674100.0 964080.0 True False 970934.3015049056 624816.7411071759 696498.7250911867 514912.4831376078 737970.7033225485 1532560.3170381126 757713.3130060205 725060.2863079592 1261540.4867907034 902551.5890095859 1.0757659875934176 0.6922781464412665 0.7716996275586738 0.5705075359765822 0.8176493314164567 1.698030711706869 0.8395235488283794 0.80334497787944 1.3977488956338258 1.0 19.783649871900508 2.971881434543595 24.924203831265363 1.0999636074115389 0.7614303819490345 0.29626657857322003 0.27428280890418694 974.3569779490673 863667.3286832497 0.08575918964292338 0.09115319403888657 937.3060808222742 -2.971881434543595 -0.3385332254625044 LPS(ph)AESLSR ddPTM_BT-474_Trastuzumab_2h_R1 7 LPSAESLSR 9 0 O43281-3;O43281-2;O43281 O43281-3 EFS Embryonal Fyn-associated substrate 1 LPS(1)AESLSR;LPS(1)AESLSR;LPS(1)AESLSR;LPS(1)AESLSR;LPS(1)AESLSR;LPS(1)AESLSR;LPS(1)AESLSR 176.65 5.5588e-05 9589130000.0 1839228.0 2180282.0 2069914.0 2121866.0 2047660.0 2365030.0 2297469.0 2132190.0 2296810.0 2307240.0 True False 1829325.8008054409 2252851.3683617 2361339.899184985 2390494.0180401783 2308417.363568309 2201541.042781784 2186331.6472861227 2291304.844841437 1730791.951177206 2159989.9678724585 0.8469140264606347 1.0429915887899737 1.0932179937441338 1.1067153336803508 1.0687167060512084 1.019236698099229 1.0121952785917845 1.0607942068815812 0.8012962916128712 1.0 21.042593181095203 -0.34870452711501554 5.792297932640837 0.99999504848981 1.0182608659497085 0.0 0.09740654948868083 0.0 0.0 0.090836367646144 0.021410337197720772 0.44801801021852355 0.34870452711501554 0.018265817459898526 LPS(ph)GSGAAS(ph)PTGSAVDIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 LPS(1)GSGAAS(0.984)PT(0.016)GSAVDIR;LPS(1)GSGAAS(0.999)PT(0.001)GSAVDIR;LPS(1)GSGAAS(0.992)PT(0.008)GSAVDIR;LPS(0.989)GS(0.011)GAAS(0.999)PT(0.001)GSAVDIR 306.2 4.8158e-50 2224920000.0 1608840.0 1764910.0 1723500.0 1702330.0 1844390.0 1883960.0 1362030.0 1252920.0 1624590.0 1334680.0 True False 1600178.1841989276 1823653.9624393752 1966153.8190694505 1917844.803456173 2079262.1339439922 1753726.279564812 1296143.4054401242 1346419.2525988466 1224231.5628906942 1249499.579722962 1.2806552400391504 1.459507463654941 1.5735530055203255 1.534890314954244 1.6640758970123097 1.4035429127184234 1.0373300051269356 1.0775667910967792 0.9797774907312332 1.0 20.252918985489327 2.300688095892669 3.89400574031541 1.0316913276858288 1.5080949275035018 0.8514589427776917 0.09519684439477266 0.08289804047301898 2.5286668998361566 0.03683770022787671 0.029352545296880864 199.84261129717353 -2.300688095892669 0.476403599817673 LPS(ph)IVVEPTEGEVESGELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPSIVVEPTEGEVESGELR 19 0 B5MBX5;B5MCP4;Q53QV2 B5MBX5 LBH Protein LBH 1 LPS(1)IVVEPTEGEVESGELR;LPS(1)IVVEPTEGEVESGELR 178.51 3.9673e-14 57522000.0 27761.6 17664.4 18728.3 23782.5 21627.3 21509.6 18055.2 17066.5 24804.5 21728.9 True False 27612.134630203705 18252.34887564471 21365.0818506982 26793.362061525342 24381.408459949813 20022.69198015207 17181.800998438004 18340.088891931013 18691.76333827133 20342.142998952786 1.3573857302854069 0.897267749842499 1.0502866807984819 1.3171356657410511 1.198566368410888 0.9842960980651271 0.8446406555751045 0.9015809638578964 0.9188689382054576 1.0 14.312184051424538 2.5718402685946447 4.23837024883229 0.9056026629358002 1.150349005754203 0.46398216980809537 0.12667579587283426 0.21467387251993839 6.754167778112793 0.04322223310294212 0.04000086590037537 373.112903439172 -2.5718402685946447 0.2447463428184028 LPS(ph)PAPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPSPAPAR 8 0 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 LPS(1)PAPAR 67.89699999999999 0.060741 1204200000.0 767470.0 488750.0 365940.0 371160.0 311400.0 573340.0 516750.0 351620.0 918530.0 427020.0 True False 763338.0267939339 505017.74829438596 417461.1711924997 418148.81794410734 351054.9441875949 533706.3552971885 491752.8283232996 377859.6698901816 692170.5891714151 399767.2180097845 1.909456284570214 1.2632795425512489 1.0442606406568387 1.0459807585670342 0.87814840330155 1.3350428230564062 1.2300979324204209 0.9451992381249562 1.7314340896118046 1.0 18.608800646484845 4.725677051079594 3.3196469086545592 1.1367970934016358 2.0028425387993574 0.48457410811661916 0.23271669692793986 0.2414696550647738 4.427783608642515 0.05397306967289179 0.5254913211132675 53171.27214051615 -4.725677051079594 0.8660454453977215 LPS(ph)PDVR ddPTM_BT-474_Trastuzumab_2h_R1 4 LPSPDVR 7 0 Q9H425;Q9H425-3;Q9H425-2;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 LPS(1)PDVR;LPS(1)PDVR;LPS(1)PDVR;LPS(1)PDVR 101.64 0.0093444 1338130000.0 2328210.0 2714890.0 2428060.0 2373040.0 2403850.0 2747710.0 2503900.0 2241090.0 2728280.0 2543100.0 True False 2315675.17604845 2805253.4724643403 2769909.7429241445 2673466.620686727 2709966.0487647713 2557767.2751136106 2382776.791173123 2408331.5158244334 2055931.9510789935 2380797.1807425516 0.9726469750464882 1.1782832637551277 1.16343792966868 1.1229291778029131 1.138259936917245 1.0743322849180557 1.0008314905807951 1.0115651745997507 0.8635477090231453 1.0 21.183013292494337 2.0996905779603714 1.3624460506783085 0.9481469675874348 1.1224424516065392 0.5454005663843444 0.0639999954136488 0.3143444405691321 1.1015724377353455 0.04112004515227072 0.021035993570627333 125.80287839294344 -2.0996905779603714 0.17429548401910444 LPS(ph)PTPENK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPSPTPENK 9 0 Q5VWQ8;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8-5;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4 Q5VWQ8 DAB2IP Disabled homolog 2-interacting protein 1 LPS(0.914)PT(0.086)PENK 67.548 0.063555 449240000.0 290940.0 260670.0 229950.0 226320.0 201610.0 316130.0 267030.0 236880.0 347260.0 255080.0 True False 289373.6113664726 269346.2433716573 262324.9612387695 254972.0887948874 227283.83846390824 294276.67718997464 254112.73874633876 254557.18845226715 261682.42604560065 238800.57601502512 1.211779369193253 1.1279128713437874 1.0985105882753996 1.0677197394148863 0.951772572146592 1.2323114211058646 1.0641211298014215 1.0659823049851045 1.0958199113771645 1.0 17.86544679099354 4.662710021540045 1.5787800671924768 1.0732739951002015 1.2494716435457758 0.29281008885166104 0.068085908642795 1.1600304526963818 3.0888888350914545 0.017631033121376333 0.30162148368298763 45994.93628044753 -4.662710021540045 0.17619764844557428 LPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPSSPVYEDAASFK 14 0 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 LPS(0.5)S(0.5)PVYEDAASFK 84.566 0.0086061 0.0 17221.0 19081.0 13937.0 14058.0 15179.0 19084.0 19942.0 14801.0 21279.0 17006.0 True False 17128.284049432976 19716.099550291925 15899.20845742438 15837.741358600786 17111.955677018326 17764.767998903844 18977.32927416206 15905.525777955114 16035.075573991642 15920.662520430898 1.075852467034732 1.2383969275770002 0.9986524390565413 0.9947916010578266 1.0748268581824814 1.1158309508857698 1.1919936905771704 0.9990492391597171 1.007186450527038 1.0 13.958612752808667 3.6207615921810987 0.012899349098455618 2.178513097136989e-07 2.178504994234815 0.132165966308332 0.07795414833079918 5245.656645548159 15.962209361504048 1266.0901364711865 1431.1701045077655 4176.01059819661 -3.6207615921810987 2.1785047763835053 LPS(ph)SSSEMGSQDGSPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPSSSSEMGSQDGSPLR 17 0 A2A2G5;Q9UJ14-5;Q9UJ14 A2A2G5 GGT7 Gamma-glutamyltransferase 7;Gamma-glutamyltransferase 7 heavy chain;Gamma-glutamyltransferase 7 light chain 1 LPS(0.965)S(0.034)S(0.001)SEMGSQDGSPLR;LPS(0.985)S(0.015)S(0.001)SEMGSQDGSPLR 150.91 2.8303e-07 163899000.0 66211.0 88697.0 98093.0 92783.0 116224.0 102592.0 86910.0 73748.0 96375.0 102343.0 True False 65854.5273327336 91649.22602653132 111903.64176035943 104529.31828674457 131024.43748638094 95500.05651559125 82705.8312715588 79251.45024475605 72624.67260883709 95811.38211974935 0.6873351148449739 0.9565588555228649 1.1679577027758272 1.0909906106572929 1.3675247615426394 0.9967506407143882 0.8632150945092238 0.8271611210628821 0.7579962944075634 1.0 16.54790943376037 2.3072538613063704 4.202048119312968 0.8447022535596849 1.0671768513764714 0.21463736277121137 0.17052866918907136 0.3074146113633031 10.629709153491895 0.0651426190255361 0.052501525259727184 202.886832210245 -2.3072538613063704 0.22247459781678658 LPS(ph)VEEAEVPKPLPPASKDEDEDIQSILR ddPTM_BT-474_Trastuzumab_2h_R1 4 LPSVEEAEVPKPLPPASKDEDEDIQSILR 29 2 O00515;E9PDI4;A0A0J9YYF6;A0A0J9YW63;A0A0J9YVY2 O00515 LAD1 Ladinin-1 1 LPS(1)VEEAEVPKPLPPASKDEDEDIQSILR;LPS(1)VEEAEVPKPLPPASKDEDEDIQSILR;LPS(1)VEEAEVPKPLPPASKDEDEDIQSILR;LPS(1)VEEAEVPKPLPPASKDEDEDIQSILR 176.27 1.0507999999999999e-13 1090830000.0 1291340.0 905490.0 793320.0 759600.0 815740.0 1059240.0 917460.0 858550.0 1485540.0 1001780.0 True False 1284387.5689213604 935628.6872697363 905012.5603389463 855765.2821164568 919619.6537302146 986017.2319827564 873078.9547624472 922619.3606285641 1119448.5722161538 937845.5427329913 1.3695086348424765 0.9976362254100022 0.9649910556717411 0.9124799800430431 0.9805662146139071 1.051364203437367 0.9309410931550555 0.98376472306937 1.193638527037139 1.0 19.838990813934526 4.738461029804753 8.002220209332426 0.9942707412284378 1.3725371449298054 0.6883707958741743 0.07409183351627027 0.049986019288360016 39.59395024709676 0.017316833168465197 0.10246678235102885 54759.69616822767 -4.738461029804753 0.37826640370136755 LPSANQGS(ph)PFK ddPTM_BT-474_Trastuzumab_2h_R1 4 LPSANQGSPFK 11 0 E5RFP7;E5RIE3;E5RFE4;Q56NI9 E5RFP7 ESCO2 N-acetyltransferase ESCO2 1 LPSANQGS(1)PFK;LPSANQGS(1)PFK;LPSANQGS(1)PFK;LPSANQGS(1)PFK 121.42 0.0004322 576411000.0 1111870.0 846720.0 752483.0 674980.0 637126.0 1177930.0 1137270.0 978760.0 1511920.0 1145350.0 True False 1105883.8154603692 874902.5633469514 858426.0657005132 760432.3987927405 718260.2195583356 1096502.471648962 1082255.9053067046 1051800.0412425755 1139327.5746900432 1072252.7824165304 1.0313648363476797 0.8159480466678651 0.8005818028896907 0.7091913504565203 0.6698609053171178 1.0226156458906828 1.0093290715157952 0.9809254482624324 1.0625550181575156 1.0 20.032213628989247 2.7160172593690555 24.59662225473127 1.0106990705399153 0.8003645566527882 0.569942827065665 0.0909844218151853 500.1986644164964 545756.2850324094 0.030717637621707684 0.02898146584211685 520.0166621913183 -2.7160172593690555 -0.2103345138871271 LPSEGPRPAHVVVGDVLQAADVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPSEGPRPAHVVVGDVLQAADVDK 24 1 P30043;M0R192;A0A2R8YEP4;A0A2R8Y7Y9;M0QZL1 P30043 BLVRB Flavin reductase (NADPH) 0 ; 132.36 2.9875e-05 2642000000.0 1678150.0 1330530.0 1148890.0 947130.0 998840.0 1338750.0 1202000.0 1283560.0 1780070.0 1381100.0 False True 1669115.0268599913 1374815.8867276316 1310643.7256691023 1067036.5608885721 1126036.353411489 1246205.3635785216 1143854.667914091 1379345.7649856133 1341395.6002159545 1292957.0155808018 1.290928473836555 1.0633113631469477 1.0136792715265601 0.8252683948733244 0.8709000684803653 0.9638412944599871 0.8846811256136512 1.0668148657409198 1.0374634145230217 1.0 20.30224288280241 4.706065163007283 1.7951576919642116 0.9535182349038698 1.38595943583137 0.6644880725785203 0.07245701400505289 0.526398297978545 1.8111454005270862 0.020738354437900675 0.3779793094244757 50823.56942357912 -4.706065163007283 0.43244120092750027 LPSETIFVGCEFLHHLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPSETIFVGCEFLHHLLR 18 0 I3L2C7;P57678 I3L2C7 GEMIN4 Gem-associated protein 4 0 ; 96.163 0.00095053 213250000.0 23069.0 25189.2 25400.0 27138.0 26141.5 25989.0 24677.0 17220.5 33270.0 27052.0 False True 22944.79906720685 26027.607294807043 28976.099219242238 30573.668017478154 29470.46507219015 24192.44160152547 23483.279234705496 18505.58115392717 25071.054295159633 25325.518199617592 0.9059952450470811 1.0277225954334097 1.144146350366871 1.207227736723658 1.1636668138397714 0.9552594900858047 0.927257600401641 0.7307088845355433 0.9899522725477025 1.0 14.628304168669441 2.4826474444948587 3.0803227633196686 0.8747825647794273 1.0950436149120155 0.3692578731008792 0.1064798523648835 0.23540658058645098 4.601581709884829 0.0408569013655497 0.035267510045913365 303.84174702110926 -2.4826474444948587 0.22026105013258823 LPSGS(ph)GAAS(ph)PTGSAVDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 LPS(0.124)GS(0.876)GAAS(0.86)PT(0.122)GS(0.019)AVDIR 93.753 0.0030566 1134800000.0 314810.0 296780.0 316050.0 301980.0 288970.0 361280.0 331240.0 285860.0 428110.0 372030.0 True False 313115.097938679 306658.1428927017 360547.0928441542 340210.63703729305 325768.61664062104 336305.5639616428 315216.65574031876 307192.32476766774 322608.0268800954 348286.72688909294 0.899015304819199 0.8804761112540265 1.035201932799941 0.9768119505330113 0.9353460568262124 0.9655997142513404 0.9050492924489055 0.8820098529493743 0.9262713792214811 1.0 18.409915967699774 2.2324259867123772 24.958669893257277 0.9141100572616876 0.9502358761920254 0.007176196997018103 0.049508329574906036 350.2957240816492 1425158.6394055223 0.018752145384851645 0.014195131991136907 170.77566561368616 -2.2324259867123772 0.03612581893033784 LPSGSGAAS(ph)PTGSAVDIR ddPTM_BT-474_Trastuzumab_2h_R1 8 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 LPSGSGAAS(0.999)PT(0.001)GSAVDIR;LPSGSGAAS(1)PTGSAVDIR;LPSGSGAAS(1)PTGSAVDIR;LPSGSGAAS(1)PTGSAVDIR;LPSGSGAAS(0.565)PT(0.435)GSAVDIR;LPSGSGAAS(0.966)PT(0.034)GSAVDIR;LPSGSGAAS(0.99)PT(0.01)GSAVDIR;LPSGSGAAS(0.985)PT(0.015)GSAVDIR 420.4 1.2916999999999992e-168 70897310000.0 3715030.0 4470000.0 4347940.0 4183960.0 4257680.0 5119690.0 4863880.0 4417730.0 5187520.0 4850440.0 True False 3695028.691258637 4618781.247827938 4960092.159028029 4713648.907008912 4799870.310753495 4765777.880753929 4628595.542574036 4747403.4453784 3909125.2052066876 4540880.766529394 0.8137251078016646 1.0171553681551702 1.0923194010264752 1.0380472752671648 1.0570350902259096 1.0495272009523438 1.019316687786912 1.0454807535073976 0.8608737833463178 1.0 22.114540724607643 4.735821813082764 5.653819560608958 1.0274876701399895 0.8069193683091512 0.5226414946957824 0.05881378281658029 0.10116300805152421 13.501995956275406 0.013553506052493414 0.08636401591386109 54427.929437935076 -4.735821813082764 -0.2205683018308383 LPSS(ph)PVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 15 LPSSPVYEDAASFK 14 0 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 LPS(0.016)S(0.984)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPS(0.175)S(0.825)PVYEDAASFK;LPS(0.003)S(0.997)PVYEDAASFK;LPS(0.002)S(0.998)PVYEDAASFK;LPS(0.013)S(0.987)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPS(0.429)S(0.571)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK 393.1 3.762099999999998e-114 171028542000.0 25937050.0 24437361.0 23079926.0 20628822.0 19693145.0 24273916.0 23524842.0 21797495.0 25533146.0 20922880.0 True False 25797407.804677162 25250743.788188312 26329378.96648695 23240428.7500792 22200950.285334647 22595917.321572036 22386855.51883646 23424134.762336876 19240844.294927485 19587563.885421235 1.317029925496648 1.2891211962801616 1.3441885433279204 1.18648898280693 1.1334206956618287 1.1535848691418884 1.142911678542052 1.195867689282747 0.9822989937634966 1.0 24.22343464430978 6.523957918717309 0.13655803586171242 0.9304173591669969 1.9918571664293532 0.7652421166703951 0.05595326477232153 26.03788079901719 0.34826592433174103 0.2989964084449235 5.079848812207336 3341626.595211303 -6.523957918717309 1.0614398072623563 LPSTSDDCPAIGT(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LPSTSDDCPAIGTPLR 16 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR 356.53 2.0492999999999994e-86 4003240000.0 1677680.0 1745330.0 1573230.0 1499750.0 1541200.0 1716310.0 1558260.0 1490610.0 1807230.0 1572880.0 True False 1668647.5572877715 1803422.2539757332 1794727.1092397037 1689618.19622717 1737462.6845919115 1597665.5294591628 1482881.0106687262 1601846.8873642085 1361862.3821413072 1472497.4517896841 1.1332091306913197 1.2247370966814515 1.2188320645705562 1.1474506758389265 1.179942744539345 1.0850039349931293 1.0070516650921344 1.087843571761236 0.9248656970415058 1.0 20.48983370674591 2.459427576941747 0.948795062059238 0.9955509648240793 1.1956020108059 0.7675785712883455 0.04550731359195207 0.2685423227183837 0.4847163892892201 0.02995831704489343 0.02084783943060924 288.0232701386855 -2.459427576941747 0.20005104598182066 LPT(ph)PTSSVPAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPTPTSSVPAQK 12 0 Q9BTA9-2;Q9BTA9;Q9BTA9-3 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 LPT(0.992)PT(0.006)S(0.001)S(0.001)VPAQK 96.103 0.063413 63988000.0 153010.0 133830.0 150290.0 154470.0 128530.0 176550.0 148230.0 134440.0 187030.0 160750.0 True False 152186.21116100918 138284.45064805675 171449.52565590225 174025.88616183386 144897.53364300448 164345.51405399674 141059.5486064106 144472.5954724874 140938.96257360108 150490.79737500098 1.0112658967563544 0.9188897464837813 1.1392691689225036 1.1563888902002883 0.9628331842906055 1.0920635475435208 0.93733006314606 0.9600095021922362 0.9365287780514703 1.0 17.199315742236557 2.227531794029594 24.979709393324857 0.9550209712043262 1.0463414695317446 0.2719457886506136 0.07070170522108557 296.72647182877796 672065.2020751083 0.027297669380709048 0.020349782701540114 168.86194761907996 -2.227531794029594 0.0913204983274184 LPTEEEWEFAAR ddPTM_BT-474_Trastuzumab_2h_R1 3 LPTEEEWEFAAR 12 0 A8MXB9;C9J660;J3KQJ1;Q8NBJ7;A0A494C1B1;H7C3B2;C9JL30;Q8NBJ7-3;Q8NBJ7-2;F8WA42 A8MXB9 SUMF2 Sulfatase-modifying factor 2 0 ;; 136.96 0.00023428 631250000.0 160999.0 189689.0 161365.0 159086.0 161218.0 186855.0 181418.0 155300.0 221317.0 175258.0 False True 160132.1992726705 196002.68369557793 184083.78939027668 179226.27128854484 181748.15668604904 173938.15365935746 172642.11825593887 166889.27459742103 166776.3908458626 164072.88439407726 0.9759821061477663 1.1946074113307492 1.1219635107293926 1.0923576552605214 1.1077281743247627 1.0601273592630052 1.052228214878454 1.017165482363187 1.0164774725681784 1.0 17.32397730510699 2.1960132438243463 1.0866913608994917 1.006699296764861 1.1066459319177815 0.35048928357257236 0.0507044725326601 0.5201038238086616 1.165916163656053 0.034090932268483254 0.018536776667602072 157.04106933285138 -2.1960132438243463 0.09994663515292057 LPVDSVFNKFEDEDS(ph)DDVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LPVDSVFNKFEDEDSDDVPR 20 1 P49756 P49756 RBM25 RNA-binding protein 25 1 LPVDSVFNKFEDEDS(1)DDVPR 123.85 1.6923e-05 29111000.0 108070.0 100160.0 91347.0 85870.0 87532.0 109100.0 109140.0 100860.0 139520.0 112310.0 True False 107488.16312770575 103493.76505200137 104207.8635976426 96741.13319555063 98678.68135718883 101558.17379377557 103860.48124471202 108386.68535670257 105137.16547221746 105142.2796465715 1.0223115143500767 0.9843211065984921 0.9911128420263488 0.9200973530414146 0.9385252220980028 0.965911849497237 0.9878089156315789 1.0308572890091114 0.9999513594876274 1.0 16.681983394648984 1.9889476890280333 4.734537770028522 1.0131053450124479 0.968602375850233 0.2933979724258543 0.027519266021102797 0.23480069968988912 13.973725286269875 0.012815432657478702 0.008222801213385927 97.48722068353285 -1.9889476890280333 -0.044502969162214856 LPVDSVFNKFEDEDSDDVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LPVDSVFNKFEDEDSDDVPR 20 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ;; 176.73 3.0245e-14 788210000.0 1130190.0 1087390.0 1031460.0 1003590.0 1013630.0 1234300.0 1172790.0 1096490.0 1539650.0 1220460.0 False True 1124105.1826159144 1123583.1188088635 1176680.60238896 1130644.3910995987 1142709.7722442914 1148975.7462296712 1116057.6672071256 1178315.651663402 1160223.8877530065 1142569.1979116255 0.9838399150533207 0.983382994100082 1.0298550009397094 0.9895631644596907 1.0001230335396079 1.005607142508091 0.9767965644855844 1.0312860296051334 1.0154517467070268 1.0 20.123850111816107 1.727790857213347 24.99999601442795 1.017558165491264 0.9967705500191 0.24767144022795073 0.015755699767334236 1.0972295455834609 2534.9821271875035 0.007103143982561302 0.003939041907956461 53.4306991714512 -1.727790857213347 -0.02078761547216401 LPVPPLQQSLDHYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LPVPPLQQSLDHYLK 15 0 P43155-2;P43155;P43155-3;B7ZBP5;A6PVN3 P43155-2 CRAT Carnitine O-acetyltransferase 0 ; 196.8 8.7469e-09 474980000.0 491830.0 686370.0 674410.0 614680.0 679620.0 882750.0 733360.0 634630.0 819430.0 772480.0 False True 489182.04192745057 709215.4105305739 769361.0659231958 692498.4249754393 766165.5785766649 821727.5702699834 697884.5750927433 681989.313185843 617492.4562994482 723179.6650465981 0.6764322416282683 0.9806904768054777 1.0638588211321207 0.9575745260077497 1.0594401579686246 1.1362702935197098 0.9650223987531164 0.9430427128255868 0.8538576043335788 1.0 19.463994585888905 4.73611224691913 5.281667277018306 0.9979751715830386 0.6635267620762143 0.6307853505674463 0.07332940042938661 0.10185782668624319 10.074802569208964 0.018589528816591875 0.1237578631719581 54464.340214222604 -4.73611224691913 -0.3344484095068243 LPVT(ph)VGFS(ph)GCVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPVTVGFSGCVK 12 0 O15230 O15230 LAMA5 Laminin subunit alpha-5 2 LPVT(1)VGFS(1)GCVK 83.99799999999998 0.066229 279010000.0 190380.0 378950.0 363900.0 394750.0 404040.0 300890.0 320710.0 268840.0 213350.0 306170.0 True False 189355.0152332063 391563.121669888 415133.9569244979 444725.3095253702 455492.09906729596 280090.1825188738 305196.0320688255 288902.2059418588 160772.7512435319 286629.96847467526 0.6606253220515442 1.3660927493158619 1.4483271206205934 1.5515659855527744 1.5891293624711829 0.9771838723263883 1.0647736302416355 1.007927424613956 0.5609069843572088 1.0 18.1288299322905 2.6198762530888158 6.9660898289198485 0.9372620099077482 1.3444455727760085 0.3479927978180566 0.2736641035478784 0.30290506743260315 16.21894672027757 0.09113967569720646 0.0857619058331879 416.75061854935217 -2.6198762530888158 0.4071835628682603 LPVVIGGLLDVDCSEDVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LPVVIGGLLDVDCSEDVIK 19 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 198.49 1.7182000000000002e-15 24315000.0 25501.0 23531.0 19127.0 19408.0 18499.0 26904.0 25268.0 24177.0 31398.0 24301.0 False True 25363.705449427445 24314.215110210123 21819.91534513567 21865.05081005292 20854.73799783662 25044.189805203812 24045.69030686626 25981.210508318407 23660.383611644796 22750.08937486718 1.1148837717291615 1.068752509476771 0.9591133900880799 0.961097358773808 0.91668817885505 1.1008391832021112 1.0569492677875092 1.1420267446079029 1.0400127762919142 1.0 14.473584592571745 2.695180026043368 24.9996816497472 1.0811097190922825 1.0028092911936317 0.18552491591385356 0.06397411972284435 678.1515654053204 390809.58567310777 0.02177435925957165 0.02052915089904556 495.6556100085327 -2.695180026043368 -0.07830042789865077 LPVWVVEDHQEVLPFIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LPVWVVEDHQEVLPFIYR 18 0 Q49AR2;E5RFG1;B4DR92;E5RHP8 Q49AR2 C5orf22 UPF0489 protein C5orf22 0 ; 185.26 5.4008e-14 356810000.0 72781.0 95438.0 103075.0 98347.0 93438.0 116314.0 104303.0 122743.0 126917.0 121083.0 False True 72389.15518272929 98614.5961365106 117587.06405603922 110797.7201162549 105336.77544958405 108273.48695370492 99257.46541384644 131902.70593632478 95640.00595066951 113355.37927562832 0.6386036167433399 0.8699595622782498 1.0373311333564628 0.9774368082422065 0.9292613735908668 0.9551684943899613 0.875630835061632 1.1636210542386158 0.8437182828184701 1.0 16.790493330183608 4.6508917951590245 2.7534772733303194 0.9807387308158059 0.6061343065334002 0.5880391018412013 0.0843702633755402 0.23471391887706858 2.684496403062401 0.020670413709049616 0.1795533805993729 44760.17699193651 -4.6508917951590245 -0.3746044242824057 LPYDVTPEQALAHEEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 LPYDVTPEQALAHEEVK 17 0 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;;; 205.06 8.2222e-12 1254470000.0 1233240.0 1117580.0 983390.0 913660.0 956900.0 1260960.0 1227140.0 1119120.0 1506550.0 1220900.0 False True 1226600.3728658436 1154777.9747086235 1121842.76422089 1029329.2623203297 1078755.5430093447 1173792.8031805598 1167778.5500699643 1202634.4171762122 1135280.9392357294 1142981.1167349222 1.07315891304468 1.0103211311201716 0.9815059477321754 0.9005654137670671 0.943808718459806 1.0269573013888937 1.021695400713075 1.05219097635812 0.9932630754905301 1.0 20.124370138215216 2.705443111130734 23.680022669226943 1.0247411733500864 0.9789151558247481 0.14002897612967657 0.04429080532923726 603.7319977249484 431685.44030560204 0.015558797245015904 0.014670392611362547 507.5082554260823 -2.705443111130734 -0.045826017525338325 LQAALDDEEAGGRPAMEPGNGS(ph)LDLGGDSAGR ddPTM_BT-474_Trastuzumab_2h_R1 8 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 Q00839;A0A1X7SBS1;Q00839-2;A0A1W2PPS1 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(0.998)LDLGGDS(0.002)AGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR 289.58 1.529999999999999e-89 21093553000.0 7070653.0 8070460.0 7605964.0 9180945.0 6868261.0 7340235.0 7115888.0 7085970.0 10408865.0 10296288.0 True False 7032585.389871396 8339080.38240391 8676817.618975777 10343251.695656491 7742893.326977642 6832821.83150461 6771665.312108034 7614761.063226585 7843739.692395157 9639170.084744347 0.7295841164792474 0.8651243114385901 0.9001623109346666 1.0730437999041509 0.803273856452861 0.7088599714947174 0.7025153880026834 0.7899809834539865 0.8137359983728507 1.0 23.200477507670954 3.023624938010048 24.98576841482162 0.7793067490263097 0.8965842546421342 0.11738932673975466 0.10995182257893173 366.40213041221915 387504.5701605019 0.031460050652607284 0.03760012828822616 1055.9052227630575 -3.023624938010048 0.1172775056158245 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR ddPTM_BT-474_Trastuzumab_2h_R1 12 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 Q00839;A0A1X7SBS1;Q00839-2;A0A1W2PPS1 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;;;;;;;;;; 318.3 2.4579999999999992e-104 15244690000.0 3177934.0 3668180.0 3403522.0 3431423.0 3391276.0 3667600.0 3503828.0 3077587.0 3729232.0 3816958.0 False True 3160824.356445656 3790273.1538383677 3882708.3136564484 3865840.799968273 3823134.8969323374 3414067.4446017514 3334334.4537172113 3307252.169610131 2810212.7427486232 3573356.472577847 0.8845533270195719 1.0607039020386442 1.0865717829868322 1.0818514272603275 1.0699002258160655 0.9554231353075213 0.9331099427961064 0.9255309944558242 0.7864350406443816 1.0 21.768848411477826 2.478391052206431 2.4368420488113136 0.9062001168105916 1.0430584986687796 0.3912038613952211 0.07362890015368327 0.2871532104962757 3.4521483358591554 0.028175974637297128 0.0237070490933622 300.8784285855732 -2.478391052206431 0.136858381858188 LQAEAPHIVVGTPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQAEAPHIVVGTPGR 15 0 Q14240;Q14240-2;E7EQG2 Q14240 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ;;; 187.75 3.2743e-07 2764120000.0 2741890.0 3224220.0 2886360.0 2990170.0 2962010.0 2975260.0 3090320.0 2658760.0 3469690.0 3330380.0 False True 2727127.968892619 3331536.213617852 3292734.399309132 3368725.2154109664 3339204.4162912644 2769587.279208689 2940829.4154311744 2857170.17210972 2614631.3909640037 3117832.297118232 0.8746871893697632 1.068542466731499 1.0560973412048362 1.0804703057712985 1.0710019327779892 0.888305404292777 0.9432288638966698 0.9163963612637412 0.8386055251851326 1.0 21.572111899341067 2.736264496955632 24.985842013174356 0.9147468122481526 1.0365282136298815 0.41096016769803734 0.06730410636116077 188.837234028281 2054871.7347344847 0.020850507194213306 0.020534888933318732 544.8343705241301 -2.736264496955632 0.12178140138172888 LQAFGFCEYKEPESTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQAFGFCEYKEPESTLR 17 1 P49756;P49756-2;P49756-3;E9PQU5 P49756 RBM25 RNA-binding protein 25 0 ; 211.13 2.5077e-12 1846790000.0 851560.0 843170.0 743140.0 768620.0 689150.0 921780.0 874470.0 850400.0 1241820.0 951220.0 False True 846975.2955772096 871234.4037429715 847767.6525113267 865927.2131916168 776909.1675879298 858059.5182367208 832168.5453001958 913861.1662437029 935790.1005354711 890512.3252195857 0.9511101324379305 0.9783518757341617 0.9519999089313909 0.972392170965285 0.8724294381847626 0.9635571501215746 0.9344829057756127 1.0262195596432198 1.050844636321817 1.0 19.764276053658282 1.6899772767186556 5.4497808520574225 1.0297541634429148 0.9466303340536483 0.5925303406521847 0.030059745355881243 0.0980652239502616 6.65786758022143 0.01567176634042184 0.007774009848525912 48.97531936899711 -1.6899772767186556 -0.08312382938926655 LQAKES(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQAKESPQR 9 1 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR 96.059 0.0046175 1818230000.0 1435490.0 1597830.0 1751230.0 1490680.0 904590.0 1438800.0 1863460.0 1278030.0 3100170.0 1727890.0 True False 1427761.4813379324 1651012.805641369 1997787.9620359698 1679399.9351571354 1019784.1745750059 1339339.1425708886 1773317.3206915061 1373403.0883048435 2336174.643649685 1617614.5808789437 0.8826339093470256 1.0206465898349395 1.2350209905689995 1.0381953495032297 0.6304246924016338 0.8279717297325226 1.0962545353219801 0.8490298644307435 1.4442096845963803 1.0 20.62543647592288 -0.3271679249674726 7.032846936139969 1.0000539313219532 0.9886771625917401 0.0 0.2163699973002612 0.0 0.0 0.20557335412393335 0.04845410424409894 0.4707952527875177 0.3271679249674726 -0.011376768730213094 LQAKES(ph)PQRK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQAKESPQRK 10 2 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 LQAKES(1)PQRK 70.438 0.028167 387190000.0 382210.0 383280.0 318890.0 386760.0 352780.0 422400.0 495890.0 386400.0 836090.0 573260.0 True False 380152.22382752335 396037.2431023471 363786.9401584311 435723.77634460403 397704.44190911955 393200.48222264653 471901.9062162383 415235.1300994435 630046.8225320104 536674.0560074215 0.7083484278253733 0.737947435075696 0.6778545302987414 0.8118964788165176 0.7410539739294195 0.7326616180179374 0.8793082149842408 0.7737194027760145 1.1739841258942796 1.0 19.033686621213477 1.2495113433207188 24.962382883766598 1.0869920350425988 0.7615413802432907 0.7999083850524007 0.0658267805102131 73.18885766478803 166837.8559665842 0.044273862538459566 0.015823784231637703 17.76279662262119 -1.2495113433207188 -0.3254506547993081 LQALDTGWNELHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQALDTGWNELHK 13 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 184.76 9.2281e-06 464120000.0 378410.0 377830.0 346900.0 315290.0 291190.0 380100.0 365810.0 357190.0 516660.0 447270.0 False True 376372.6826053034 390405.8431469417 395740.50469114643 355205.68167258793 328271.32048164983 353824.58165915724 348114.3727700943 383845.3315740683 389336.0658893051 418724.84567288763 0.8988544302893595 0.932368468652875 0.9451087242152886 0.8483033317542338 0.7839786052201424 0.8450049843365847 0.8313678454180983 0.916700634177157 0.9298136232246859 1.0 18.675642999550114 1.0910397623678298 1.6628726147943798 0.9966675102889371 0.8707326430716912 0.4300555281548972 0.04632365806648281 0.37520197766212166 2.050873875903647 0.04906371352046773 0.014334283833200083 12.332177368337621 -1.0910397623678298 -0.1259348672172459 LQALVNSLCAGQS(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 2 LQALVNSLCAGQSP 14 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 1 LQALVNSLCAGQS(1)P;LQALVNSLCAGQS(1)P 197.29 2.4816e-08 1065990000.0 1042230.0 1209240.0 1116550.0 1167230.0 1136980.0 1240970.0 1063960.0 927130.0 1213990.0 1126200.0 True False 1036618.7494826391 1249488.8223989822 1273750.534773421 1315001.1983212116 1281767.6635915614 1155184.664829161 1012492.1900780996 996317.1484707475 914818.4311325767 1054324.9518116699 0.9832061241663628 1.1851078932087853 1.2081195010937638 1.2472446906066446 1.2157235408201919 1.0956628341615 0.9603227053844376 0.9449810959692776 0.8676816664166241 1.0 20.007888155573276 2.3283044928600787 2.709805723173584 0.9349072743527409 1.1750267070448959 0.6749476975256156 0.07360128116104867 0.15561026073013948 2.335757162838265 0.030005047343232578 0.02307062771573226 212.9631651551244 -2.3283044928600787 0.24011943269215497 LQAMHLER ddPTM_BT-474_Trastuzumab_2h_R1 1 LQAMHLER 8 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 111.65 0.005775 0.0 85891.0 112290.0 127940.0 106640.0 65845.0 68113.0 88811.0 63850.0 152030.0 85708.0 False True 85428.57239938727 116027.50476926145 145952.83992558467 120140.61306595439 74229.97045610857 63404.50863075554 84514.87263903342 68614.81122373055 114564.24359762899 80238.04206168948 1.0646891450031537 1.4460410771246874 1.8189980235730532 1.4973024014417822 0.9251219066267629 0.7902050822975989 1.0533017813926189 0.8551406472627705 1.427804575659367 1.0 16.29199878183112 3.2416515700076625 24.99734630823489 0.9846695798192205 1.4818665936026505 0.4645820624722907 0.23423718029501128 66.24553842800472 535740.4027171572 0.06651236851157456 0.08635732705626051 1744.4220594935423 -3.2416515700076625 0.49719701378342995 LQAQEHGAER ddPTM_BT-474_Trastuzumab_2h_R1 1 LQAQEHGAER 10 0 Q9H5N1;B4DHR0;Q9H5N1-2 Q9H5N1 RABEP2 Rab GTPase-binding effector protein 2 0 126.76 0.0036617 0.0 92660.0 96097.0 101710.0 95934.0 88805.0 99601.0 97201.0 74336.0 95122.0 90487.0 False True 92161.1288554939 99295.53055313684 116029.88392083188 108079.2345636654 100113.7903615266 92715.81730553454 92499.01628612106 79883.32979055954 71680.45766949726 84712.04219018175 1.0879342118631572 1.1721536629965148 1.369697635908014 1.275842628383618 1.1818129721954682 1.0944821410087602 1.0919228706404842 0.9429985126697623 0.8461660918122115 1.0 16.37027944914422 2.148625901815585 1.2305415854163813 0.9154566377052823 1.2275199492918643 0.695628672861292 0.08079744192447445 0.2638403914145271 0.7569992783356189 0.05805263246580438 0.03051957302602813 140.80753697474427 -2.148625901815585 0.31206331158658196 LQAS(ph)LSSSDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQASLSSSDVR 11 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 LQAS(0.733)LS(0.233)S(0.013)S(0.022)DVR 79.633 0.027915 401570000.0 302640.0 237530.0 240430.0 247050.0 198350.0 225760.0 216560.0 204170.0 308020.0 232070.0 True False 301010.61986646475 245436.0424600826 274280.4541449767 278326.50466939295 223608.69678744226 210153.74258187687 206084.16546046198 219406.20215425311 232112.59825653918 217259.09391487716 1.3854914629460884 1.1296928383409592 1.262457875537494 1.2810810339586622 1.029225947499592 0.9672954940344904 0.9485640474097091 1.0098827082479558 1.0683676990178448 1.0 17.729057040297256 3.193340870938665 5.555670324415302 0.9971690029772206 1.255206122205709 0.7933625032705038 0.0651756046394827 0.08118151530942995 5.782856538897742 0.018335342808586827 0.022470829941345194 1560.7770516686978 -3.193340870938665 0.2580371192284884 LQASLS(ph)SSDVR ddPTM_BT-474_Trastuzumab_2h_R1 5 LQASLSSSDVR 11 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 LQAS(0.206)LS(0.78)S(0.012)S(0.002)DVR;LQASLS(0.975)S(0.025)SDVR;LQASLS(0.916)S(0.077)S(0.007)DVR;LQAS(0.004)LS(0.93)S(0.047)S(0.018)DVR;LQAS(0.013)LS(0.929)S(0.055)S(0.003)DVR 209.11 1.8119e-08 1871660000.0 2502430.0 1880060.0 1703260.0 1869440.0 1501600.0 2041500.0 1560420.0 1643730.0 2498180.0 2016190.0 True False 2488957.19492611 1942636.6605797326 1943064.202998684 2106110.9123219987 1692819.8593195018 1900375.910174083 1484936.5232167246 1766393.4792918165 1882537.0128969585 1887515.0280528981 1.318642319628915 1.0292032814084116 1.0294297921448015 1.1158114669394699 0.8968510629903499 1.0068136581325404 0.7867150730707236 0.9358301539532499 0.9973626619751607 1.0 20.848056700284317 7.999999999998535 0.56846976787792 0.9324085647350316 19.18170266116025 0.6268868266723304 0.0809446518529359 91.59577089558185 0.7878108556122296 0.03619732886586914 2055.069413934592 99999999.99966276 -7.999999999998535 18.24929409642522 LQAVEVVITHLAPGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQAVEVVITHLAPGTK 16 0 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 0 ; 141.97 1.5535e-06 333270000.0 642230.0 650660.0 614500.0 582410.0 622400.0 807660.0 796480.0 676380.0 919880.0 819690.0 False True 638772.3050384616 672316.8247677234 701016.2586702493 656143.0462841569 701658.9507461756 751828.3652271378 757951.2195509268 726854.9101880473 693187.8997604884 767376.682428084 0.8324103659460949 0.8761236041736657 0.9135230125212284 0.855046890671777 0.9143605309012407 0.9797383507252929 0.9877172930934861 0.9471944181157287 0.9033215572398523 1.0 19.549575402191618 2.9835039839279407 4.016495547357451 0.9608668447261676 0.8733112101983013 0.667154768978691 0.03131012647185042 0.140773066430259 5.1630913319850285 0.009769335598388287 0.011060637452495962 962.7288443651757 -2.9835039839279407 -0.0875556345278663 LQAVTDDHIR ddPTM_BT-474_Trastuzumab_2h_R1 12 LQAVTDDHIR 10 0 P30043;A0A2R8YEP4 P30043 BLVRB Flavin reductase (NADPH) 0 ;;;;;;;;;;; 217.14 7.3927e-09 24702330000.0 13168030.0 16178410.0 14846000.0 14921130.0 13561734.0 13850480.0 14313550.0 12694771.0 16008840.0 14432880.0 False True 13097134.789585657 16716898.596794622 16936187.756254725 16810143.52810209 15288740.438204901 12893028.918122925 13621148.903429057 13642119.274760967 12063675.889465688 13511761.241789764 0.969313663497714 1.237210922961832 1.2534404252107227 1.2441119427207568 1.1315135136431524 0.9542078702698508 1.0080957367201675 1.009647745444763 0.8928277871099902 1.0 23.687712404691922 2.858267890961456 4.032212398964641 0.9796460353680713 1.1861163266336636 0.5807737650112833 0.08266908164739725 0.16801767220896702 4.6970858393486585 0.025945885297567906 0.027715985087650167 721.5524255876925 -2.858267890961456 0.20647029126559235 LQAYHTQTTPLIEYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQAYHTQTTPLIEYYR 16 0 F8W1A4;P54819-2;P54819;P54819-6;P54819-5;F8VY04;A0A5K1VW67 F8W1A4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed 0 ; 156.49 1.5804e-07 1949720000.0 398030.0 448440.0 501750.0 428290.0 514750.0 636360.0 471380.0 405500.0 581770.0 443070.0 False True 395887.0507052906 463366.0543122959 572392.0387108185 482511.4700864373 580300.361337716 592369.9310303114 448577.5485535308 435760.4690872774 438400.5788186061 414792.8932686885 0.9544210065548269 1.1171022016815109 1.3799465902132577 1.1632587682110624 1.3990123041038156 1.4281101259046756 1.0814494554586251 1.0505495059314018 1.0569143925390865 1.0 18.662031650811066 2.027593388984774 24.839479008673027 1.0475782559433267 1.2456014362635526 0.32797894860747134 0.1361363396319594 244.0283761570996 219672.45787812056 0.05375929386387362 0.03970299453507144 106.55979810495946 -2.027593388984774 0.19802318032022592 LQCPQVDLFYLHAPDHGTPVEETLHACQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQCPQVDLFYLHAPDHGTPVEETLHACQR 29 0 O43488;H3BLU7;H7C5H7 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 0 ;; 249.96 1.074e-46 2080100000.0 433278.0 594617.0 600646.0 612701.0 539430.0 625826.0 590776.0 250578.0 692605.0 571537.0 False True 430945.2793897111 614408.4673914325 685211.7358913777 690268.883778351 608123.2130478953 582564.1216559418 562197.9078965186 269277.4027693018 521921.77818151546 535061.019342557 0.8054133338272792 1.1482960731214764 1.2806235384766296 1.2900750733561228 1.1365492739409644 1.0887807195742891 1.0507173716136253 0.5032648483721909 0.9754434715180971 1.0 19.029343902928225 1.948254096302072 9.916822023263578 0.7720251468284425 1.135267281103001 0.345105451986071 0.17939287929780676 0.5357476932037789 100.46140376597609 0.07455386417924664 0.04753122710094328 88.76752196939549 -1.948254096302072 0.3632421342745584 LQDAEIAR ddPTM_BT-474_Trastuzumab_2h_R1 6 LQDAEIAR 8 0 P06703;R4GN98 P06703 S100A6 Protein S100-A6;Protein S100 0 ;;;;; 175.91 0.00061278 15140350000.0 10210770.0 11322780.0 10887070.0 10700730.0 9195600.0 11279790.0 11695030.0 9547660.0 11998700.0 11059290.0 False True 10155796.348843204 11699651.887534937 12419874.823891168 12055441.320829444 10366605.153408641 10500044.66706957 11129296.719546847 10260154.87123512 9041781.159342712 10353476.64386548 0.9809068681157066 1.1300215656995833 1.199584955962599 1.1643858131434905 1.001268029087692 1.0141564064174455 1.0749332907551443 0.9909864313369892 0.8733086933363627 1.0 23.303611962819243 2.312797862898881 0.8387738179819203 0.9533763158641811 1.115370404665185 0.3972630362505265 0.07267358185433143 0.6509343876816124 0.8868644628337465 0.058395365485561616 0.03656998297942919 205.49339292840446 -2.312797862898881 0.16199408880100374 LQDEFENR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQDEFENR 8 0 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 130.31 0.0024505 566670000.0 436440.0 563710.0 474550.0 510380.0 481800.0 521410.0 524590.0 463130.0 550040.0 552850.0 False True 434090.255533043 582472.7465801093 541362.5151374561 574994.0556695603 543154.374147667 485366.1539671172 499213.57757159125 497691.11232648784 414490.01215838874 517566.6396813019 0.8387137466980861 1.125406279930975 1.0459764475368947 1.1109565640158339 1.0494385312046406 0.9377848507894315 0.9645397119856647 0.9615981289538819 0.8008437568804978 1.0 18.981385104291554 2.7359611804951456 22.5121298698315 0.9358391047995642 1.0441007883188869 0.24504259682643348 0.08782227929078856 77.27800974238973 669252.5460430017 0.02679348710500271 0.026390189937859375 544.4539845318576 -2.7359611804951456 0.10826168351932264 LQDFKLDFGNSQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQDFKLDFGNSQGK 14 1 O75223;B8ZZK2;O75223-2;O75223-4 O75223 GGCT Gamma-glutamylcyclotransferase 0 93.909 0.0039899 1386400000.0 1676600.0 2037000.0 2058700.0 2304700.0 1853000.0 2563000.0 2792100.0 2094100.0 3240000.0 2586000.0 False True 1667573.3718877698 2104800.3136074976 2348547.0654588197 2596474.7836937876 2088968.5664085217 2385825.842653039 2657035.4561422085 2250372.3756243372 2441545.4137756904 2420959.266014014 0.6888068689537864 0.8694075704433244 0.9700894593429417 1.0724983357397628 0.8628681183256346 0.9854878089630891 1.0975134912190745 0.9295374801284702 1.0085033019971337 1.0 21.207147374718865 4.6279056290097484 1.9435233706330075 0.9900397478166356 0.6365723203760317 0.6935137587354108 0.06240265183132991 0.32955571452752824 1.5838150984838142 0.015849061187726877 0.19262571141789817 42452.730531312176 -4.6279056290097484 -0.3534674274406039 LQDISELLATGAGLS(ph)ESEAEPDGDHNITELPQAVAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQDISELLATGAGLSESEAEPDGDHNITELPQAVAGR 37 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;C9J3W3 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 LQDISELLATGAGLS(0.968)ES(0.032)EAEPDGDHNITELPQAVAGR 249.44 2.4999e-50 39484000.0 22403.0 24920.0 19471.0 24241.0 21301.0 21747.0 24507.0 18373.0 22517.0 23808.0 True False 22282.38473720728 25749.447135541883 22212.347555034088 27309.908114514263 24013.556089081434 20243.681076931578 23321.502784168566 19744.086556203594 16967.98706234172 22288.553056945708 0.9997232516744058 1.155276749897305 0.9965809578703059 1.225288516699103 1.0773941236888938 0.9082546105711922 1.0463444048872865 0.8858397629383488 0.7612870615238992 1.0 14.444015341354554 2.331892785867975 1.1916998573123259 0.8832919433439388 1.0949081760389652 0.4266106675302852 0.09612143385305234 0.4287753160784208 1.198212255396228 0.05794232419274662 0.035980078037238974 214.73003053909918 -2.331892785867975 0.21161623269502639 LQDSFASETNLDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQDSFASETNLDFR 14 0 Q92621 Q92621 NUP205 Nuclear pore complex protein Nup205 0 91.914 0.01202 158350000.0 28342.0 27584.0 19485.0 32493.0 22625.0 22442.0 27730.0 18011.0 24220.0 33295.0 False True 28189.409821092213 28502.116765119896 22228.318633343904 36606.610468417646 25506.159641118622 20890.637362785605 26388.593961112932 19355.07227800484 18251.30553137259 31170.084594716383 0.9043738631967196 0.9144061408787857 0.7131298782907958 1.1744148578481177 0.8182897150507622 0.6702143300030299 0.8466000110113927 0.6209502646420698 0.5855391722121394 1.0 14.927874449951043 3.001526206156804 24.999274985021938 0.7240345360363317 0.921200921548454 0.23549552311575472 0.1521917723990998 65.80108082189537 1077784.3815109436 0.04239765787879988 0.05033052146506794 1003.5204016546418 -3.001526206156804 0.1971663855121223 LQDYEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LQDYEEK 7 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ;; 114.89 0.032833 0.0 1050220.0 908470.0 863200.0 821540.0 864200.0 1102020.0 1085470.0 894110.0 1454420.0 1113650.0 False True 1044565.7322104118 938707.874768287 984731.0569310982 925546.8797656054 974250.747485291 1025839.9512760431 1032961.6692019204 960833.0283985846 1095997.6792295182 1042575.9035562675 1.001908569579785 0.9003736529554514 0.9445173762141843 0.8877501164265629 0.9344650534911495 0.9839474975173151 0.990778384267704 0.9215952767766311 1.0512401787639891 1.0 19.991720990594015 2.764778902478545 6.757796214080559 0.9796325070689698 0.9298148812401649 0.2959351067524232 0.04137673661681939 0.2710230585194894 48.77060558016027 0.012530128940049443 0.013027685675679978 581.8069468559044 -2.764778902478545 -0.04981762582880489 LQEAGILSAEELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQEAGILSAEELQR 14 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 150.11 1.6987000000000002e-05 56118000.0 43465.0 48055.0 36215.0 46497.0 45352.0 54436.0 53112.0 39173.0 46901.0 48420.0 False True 43230.98926941548 49654.481625139066 41313.757213577046 52383.51543255519 51127.308377635854 50672.96744856057 50542.769652456846 42096.28817646349 35342.87699120172 45329.794145552405 0.95369921889789 1.0954049662281773 0.911404033314601 1.1556089415353075 1.1278963282618895 1.1178733193857315 1.1150010849413028 0.9286670934638211 0.7796831566831511 1.0 15.468171989132822 1.6069310608953074 4.822808321394608 0.8797761103140618 1.0702198062190684 0.4216671957711432 0.0890065025320392 0.133640685053292 6.815321840015938 0.049239819720408584 0.022646379486456734 40.45116751638641 -1.6069310608953074 0.19044369590500665 LQEALEDER ddPTM_BT-474_Trastuzumab_2h_R1 2 LQEALEDER 9 0 Q9UH65;E7EMB1 Q9UH65 SWAP70 Switch-associated protein 70 0 ; 129.85 0.00087862 763050000.0 666340.0 810610.0 747260.0 762350.0 722570.0 771230.0 748920.0 702540.0 920840.0 723120.0 False True 662752.4994773336 837590.6638259062 852467.7126996432 858863.431834493 814585.0064920697 717916.6853801408 712691.8784477706 754967.1022258361 693911.3206238284 676969.862505821 0.9789985288623315 1.2372643306831168 1.2592402703780823 1.2686878388579785 1.203281049287575 1.0604854442452638 1.0527675128841387 1.1152152319326392 1.0250254244041206 1.0 19.368732083449505 2.7383813770949157 24.47860043167379 1.0626483380736154 1.2004226996446863 0.41251954325573237 0.081682103791888 12.441348479689118 1699052.0831045634 0.025840126464190198 0.025810179525783745 547.4965376979279 -2.7383813770949157 0.13777436157107092 LQEDGLLSNVSHVIVDEVHER ddPTM_BT-474_Trastuzumab_2h_R1 4 LQEDGLLSNVSHVIVDEVHER 21 0 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 0 ;;; 201.32 4.0449e-22 142043000.0 123291.0 144949.0 127999.0 139637.0 141375.0 139114.0 139528.0 110031.0 154176.0 143080.0 False True 122627.21495491777 149773.539841479 146020.14661274743 157315.0298826959 159378.26825472453 129497.37661913189 132778.49759127895 118242.07194609684 116181.39065255572 133948.51190304916 0.9154802335069937 1.118142618485257 1.0901214544170197 1.1744440281394035 1.1898472479491315 0.9667698041532632 0.9912651936542822 0.8827427066280474 0.867358576828736 1.0 17.03131902812911 2.566923017981621 4.9315204563074975 0.9288997961470978 1.1023331896036443 0.4911326146532421 0.07955399337541337 0.18564726043458954 7.522125932733268 0.027057313670884705 0.0251742851329488 368.9122002652285 -2.566923017981621 0.17343339345654651 LQEDKEQMAQQLAEETQGFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQEDKEQMAQQLAEETQGFQR 21 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 279.15 5.959300000000001e-45 800570000.0 593920.0 614150.0 614550.0 526230.0 523220.0 703000.0 651580.0 642550.0 829150.0 728400.0 False True 590722.4007107153 634591.6114884847 701073.298235643 592850.6640444219 589848.9656320927 654403.264683998 620060.5861226821 690500.3438027878 624817.0925407761 681912.8883853863 0.8662725265530775 0.9306050997086335 1.028098031547144 0.8693935459236686 0.864991666353044 0.9596581555064535 0.9092958890846654 1.0125931853813976 0.916271129616277 1.0 19.379227926998087 1.7556516597955851 24.99999999896903 0.976013268340656 0.9206803681211434 0.20348259682782732 0.05240256676194776 11.07006861206873 16210.62675622935 0.024349840382938637 0.013503336131748405 56.97071365873068 -1.7556516597955851 -0.05533290021951265 LQEDPNYS(ph)PQRFPNAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQEDPNYSPQRFPNAQR 17 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;H0Y710;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR 190.37 1.8319e-10 2628000000.0 1916010.0 2097240.0 1981580.0 2007190.0 1948090.0 2306760.0 2324440.0 2002520.0 2492100.0 2549560.0 True False 1905694.4150487212 2167045.3655916476 2260569.2397978744 2261300.0481981714 2196167.714265936 2147299.110728959 2211997.956976898 2151958.210990519 1877955.3474291367 2386844.898011868 0.798415689530592 0.9079121007806987 0.9470951554836364 0.947401337255609 0.9201132910208129 0.8996391481145509 0.9267455789940061 0.9015911393249729 0.7867940430454393 1.0 21.186673389560664 4.735468018352366 5.453750479503411 0.9141147720755562 0.7942763221112548 0.3184202083010004 0.05133042451806957 0.1704990697343153 19.38093021118003 0.011798795327976428 0.07641603945011581 54383.608190377745 -4.735468018352366 -0.11983844996430149 LQEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LQEEER 6 0 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 RPS17 40S ribosomal protein S17 0 ; 171.08 0.012891 843170000.0 1543330.0 1833460.0 1609890.0 1629480.0 1606300.0 1574710.0 1692430.0 1537190.0 1860880.0 1717440.0 False True 1535020.8827600824 1894485.6077500249 1836548.5185852693 1835772.000925653 1810852.7837139806 1465854.0041686182 1610560.6951895554 1651902.9234926589 1402291.058514478 1607831.5088256395 0.9547150148097682 1.1782861558259656 1.1422518519534952 1.1417688923552078 1.1262702427299909 0.9116962791948755 1.0016974330636854 1.0274104683389425 0.8721629417119159 1.0 20.61668479790695 2.751685608364156 24.622678442817097 0.972776316469781 1.116232420177953 0.513426334095073 0.07055827119320204 526.4232991144053 987577.0507237526 0.021151870736635988 0.022306567460108333 564.5281573050531 -2.751685608364156 0.14345610370817197 LQEEERER ddPTM_BT-474_Trastuzumab_2h_R1 1 LQEEERER 8 1 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 RPS17 40S ribosomal protein S17 0 107.15 0.0065951 0.0 70115.0 112930.0 113790.0 143240.0 122680.0 99328.0 132340.0 103220.0 134000.0 134460.0 False True 69737.5086305088 116688.80678237339 129810.64291958937 161374.16931327208 138302.57081867114 92461.6891529617 125938.20861210558 110922.80054053974 100977.49550800688 125878.6476830025 0.5540058613127722 0.9269944421092631 1.0312363955997423 1.281982069903207 1.098697621593104 0.7345303659903146 1.0004731614948157 0.8811883713580578 0.8021812862360608 1.0 16.941674059365436 -0.22602467570829643 8.585053833842343 0.9999999977416256 0.9364163969953417 0.010150189208284588 0.1915720991400941 0.0 0.0 0.18884694005152328 0.04451165063892052 0.5942583931316388 0.22602467570829643 -0.06358360074628389 LQEEGWLEGELNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQEEGWLEGELNGR 14 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 0 ; 150.21 1.6921e-05 61500000.0 76998.0 83409.0 69015.0 74900.0 74492.0 93250.0 86292.0 72225.0 86770.0 81783.0 False True 76583.45132328202 86185.21814319474 78731.71211086618 84382.33232032997 83978.11465132418 86803.84698688879 82117.72629254797 77614.79625111874 65386.69615843105 76563.53892205103 1.000260076813472 1.1256692069960286 1.0283186124797936 1.102121630065183 1.0968421239883113 1.1337491475578654 1.0725435037185473 1.0137305216538905 0.8540187284838143 1.0 16.224369895205363 1.5135694313314483 3.5326997261423783 0.9267082725075415 1.0826339771461395 0.5817585646409449 0.05124907309736502 0.1255879117394365 3.3408519995211345 0.032253697462187446 0.012422865880858521 32.62642065890285 -1.5135694313314483 0.155925704638598 LQEIEELER ddPTM_BT-474_Trastuzumab_2h_R1 2 LQEIEELER 9 0 P78362;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 0 ; 107.24 0.006525700000000001 86791000.0 106872.0 190393.0 174887.0 194390.0 183735.0 140284.0 152264.0 115005.0 103072.0 136462.0 False True 106296.61302659537 196730.11591000127 199509.56945494545 218999.75406874443 207132.56316733392 130586.49727301563 144898.4086150343 123587.25708355693 77671.28669403952 127752.87832900384 0.8320486741038284 1.5399270723541691 1.5616835570713763 1.7142451656138125 1.621353396311764 1.0221804704604331 1.1342085635196049 0.9673931319596641 0.6079807180078677 1.0 16.962996270524954 2.6477629093244635 5.102164382514529 0.953991721866835 1.478142296026429 0.49292593624236536 0.2571706127371203 0.1986465559847851 8.475056466253132 0.08655418647906378 0.08154339582942569 444.3885999652794 -2.6477629093244635 0.524150574159594 LQEKEDLQELNDR ddPTM_BT-474_Trastuzumab_2h_R1 10 LQEKEDLQELNDR 13 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;;;; 242.26 5.7722e-17 54255040000.0 21126790.0 21881870.0 19795910.0 19062600.0 19105720.0 23521900.0 24573980.0 22397320.0 29830600.0 23601580.0 False True 21013045.710047036 22610194.81508028 22583002.058865733 21475923.205467604 21538720.193525407 21895886.41759674 23385242.705680102 24068721.749686494 22479248.33956081 22095306.958070785 0.9510185013461228 1.0233030415909847 1.0220723387876178 0.9719676330463045 0.9748097292514838 0.9909745295300727 1.058380530764165 1.0893137531585584 1.017376603195358 1.0 24.39723663802247 2.241513196978438 24.841675279481144 1.0534062429848094 0.9906631761920176 0.38026129086782645 0.031127164559347092 60.9101667261463 512475.715500318 0.011127944614126358 0.008935011206804743 174.3866347816606 -2.241513196978438 -0.06274306679279185 LQEKEELR ddPTM_BT-474_Trastuzumab_2h_R1 6 LQEKEELR 8 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 0 ;;;;; 137.95 0.00066218 4869070000.0 7018610.0 8228460.0 7836130.0 7915760.0 8525720.0 9790800.0 9254640.0 8366330.0 12594920.0 9985090.0 False True 6980822.583600883 8502339.3168909 8939388.99113704 8917894.404378835 9611419.906098468 9113985.041064128 8806957.707041968 8990668.027962914 9491070.72928139 9347833.007534362 0.746785118858492 0.9095519047075408 0.9563060212919812 0.954006602085318 1.0281976473426147 0.9749837244330581 0.9421389641795646 0.9617916816353509 1.015323093772811 1.0 23.15620053094235 5.041578238402194 1.2728894084496076 0.9788306680572639 0.482160091924693 0.8855233676694043 0.02547333307098466 0.8671211939073171 0.7347221903360116 0.007334515644817345 0.6745520388373227 110047.00777605847 -5.041578238402194 -0.49667057613257093 LQEKLS(ph)PPYSSPQEFAQDVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQEKLSPPYSSPQEFAQDVGR 21 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LQEKLS(0.998)PPYS(0.001)SPQEFAQDVGR;LQEKLS(0.997)PPYS(0.003)SPQEFAQDVGR 183.47 2.6052e-17 1322080000.0 1049850.0 922980.0 820560.0 814030.0 871950.0 1059660.0 1067550.0 981010.0 1340590.0 1050170.0 True False 1044197.7242493001 953700.8313468085 936087.7155646221 917086.1145356231 982987.6640474413 986408.1983713286 1015908.5280629687 1054217.9476678437 1010219.5574856641 983147.251504228 1.0620969774890425 0.9700488201412697 0.9521337868080247 0.9328064673246754 0.9998376769537396 1.0033168448186285 1.0333228583089822 1.0722889638910922 1.0275363694909538 1.0 19.90704798775244 2.4516834512366654 2.075772827907347 1.0433121157313925 0.9777855199681392 0.2795503112766967 0.0363889813890217 0.34036517479217965 2.982377481319496 0.01537951869760856 0.01234565970092316 282.93290014181616 -2.4516834512366654 -0.06552659576325326 LQELESCSGLGS(ph)TSDDTDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQELESCSGLGSTSDDTDVR 20 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7;B4DGD8 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 LQELESCSGLGS(0.796)T(0.204)SDDTDVR;LQELESCS(0.001)GLGS(0.958)T(0.038)S(0.004)DDTDVR 250.38 1.2159999999999997e-30 389737000.0 203291.0 211197.0 189702.0 202395.0 198575.0 206623.0 176677.0 173706.0 242211.0 197256.0 True False 202196.50384375322 218226.5644737173 216410.39268065713 228018.186247973 223862.34920376292 192339.63834822422 168130.4585383176 186668.8237811953 182521.34451111854 184666.95320064205 1.0949252172047546 1.181730464988029 1.1718956149426778 1.2347536053201111 1.212249107508341 1.0415487720710144 0.9104523339140305 1.0108404375870013 0.9883811984096998 1.0 17.49456618851444 2.589967929970407 4.157702310350064 0.9788789789270012 1.1812566394369435 0.8355752257257535 0.04253589564263763 0.08863318101175102 2.6018051004141953 0.01452436044043997 0.013500613811077606 389.01641741615094 -2.589967929970407 0.20237766050994233 LQELNAHIVVSDPEDITDCPRT(ph)PDTPNNDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQELNAHIVVSDPEDITDCPRTPDTPNNDPR 31 1 Q16513-3;Q16513-2;Q16513;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 LQELNAHIVVSDPEDIT(0.002)DCPRT(0.998)PDTPNNDPR 197.14 1.9220000000000003e-25 157160000.0 64018.0 70337.0 68056.0 76127.0 73004.0 80451.0 75460.0 50874.0 71615.0 74464.0 True False 63673.334201068436 72678.12452538569 77637.69324664371 85764.6703945229 82300.626671391 74889.61173128353 71809.71151480633 54670.47621293754 53966.442841835116 69711.64376816222 0.9133816211940835 1.0425535907184889 1.1136976414562954 1.2302775513334288 1.1805865164375633 1.074276945474726 1.0300963746260465 0.7842373706572375 0.7741381485897763 1.0 16.089112025651872 1.8913733515774507 3.7930889357800845 0.8341947710250414 1.0990380817466499 0.5393183974147439 0.0983154474085386 0.17153619111565088 4.102960748042324 0.05048931074843645 0.028178951693649108 77.87056962421157 -1.8913733515774507 0.2648433107216085 LQELPDAVPHGEMPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQELPDAVPHGEMPR 15 0 P33992;B1AHB1;B1AHB2 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 ;; 157.91 1.8682e-06 2088010000.0 1081480.0 1273290.0 1152650.0 1216560.0 1245290.0 1315100.0 1315440.0 1115380.0 1404870.0 1409840.0 False True 1075657.4318437243 1315670.6879299418 1314933.1009865971 1370576.3712632924 1403870.3000878927 1224190.23241241 1251807.141731208 1198615.3193848778 1058658.6127935343 1319862.8041752488 0.8149766994273904 0.9968238242398788 0.9962649881691816 1.038423362585578 1.0636486577596511 0.92751324496744 0.9484373207360993 0.9081362968887242 0.8020974675887356 1.0 20.331956542829985 2.088787904683758 1.8437520469772342 0.8956586469118951 0.9844869121521328 0.13550311414851746 0.07775422779681262 0.5975014633542539 3.8841992194720922 0.04394742859462025 0.02414351761821989 122.68399360631867 -2.088787904683758 0.08882826524023768 LQELSAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LQELSAEER 9 0 J3KQ32;Q9NTK5;Q9NTK5-2 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 155.42 0.00017066 945780000.0 828170.0 950180.0 916870.0 917960.0 924040.0 1024980.0 1026780.0 893810.0 1132750.0 1006890.0 False True 823711.2247383362 981806.1669040616 1045957.3264230953 1034173.6418794397 1041711.0167858229 954125.5451433912 977110.7287194928 960510.6408752146 853598.9405723485 942629.4181581017 0.8738441734057784 1.041561135257704 1.1096166810355828 1.0971158145055726 1.1051119312840105 1.0121958075611017 1.0365799219684524 1.01896951481957 0.9055509239678529 1.0 19.846331181006 1.4315940312714246 4.539702304141928 0.9528600273239282 1.0447512227848261 0.19872216297457113 0.06751280181936319 0.3059422971600678 11.343025221411532 0.04749899655776546 0.017513784403728156 27.014319455574725 -1.4315940312714246 0.09189119546089797 LQEVFGHAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQEVFGHAIK 10 0 P54136;P54136-2;E5RH09;E5RJM9 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 121.08 0.00052462 438200000.0 747020.0 978400.0 889030.0 964730.0 753830.0 928840.0 954250.0 813560.0 1321700.0 993600.0 False True 742998.1273217254 1010965.4525447099 1014197.6964127128 1086864.7190840035 849825.7821995346 864631.4770541744 908089.2819109982 874271.9783739715 995984.7448726326 930187.5973362422 0.7987615933059448 1.0868403915938993 1.0903152217004919 1.168436046875312 0.9136068731008261 0.929523764378498 0.9762431626818864 0.9398878042210034 1.0707353524437566 1.0 19.82716217824173 3.1801178404212065 24.999999301965527 0.9651636619427286 1.0435934899812696 0.08935143752830288 0.09830090156166396 162.1712951214861 69370.77374775942 0.028301686991692922 0.0338270068589181 1513.9719902309332 -3.1801178404212065 0.07842982803854093 LQEVPHEGPMCDLLWSDPDDR ddPTM_BT-474_Trastuzumab_2h_R1 11 LQEVPHEGPMCDLLWSDPDDR 21 0 P67775;P62714;H0YC23;E5RHC1 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 0 ;;;;;;;;;; 263.18 9.764799999999999e-37 7714225000.0 3395657.0 3878566.0 3440798.0 3537896.0 3334939.0 3734860.0 3532746.0 3141769.0 3907754.0 3765840.0 False True 3377375.160004957 4007661.7246673396 3925232.450447651 3985793.270851349 3759623.7139178975 3476677.9191147625 3361853.5795797226 3376223.7563597234 2944740.387920862 3525500.867102166 0.9579844927909597 1.1367637892432267 1.1133829201619372 1.1305608539326573 1.0664083929181307 0.986151486036214 0.9535818331376683 0.9576578998645536 0.8352686608020414 1.0 21.749396804751154 2.593359921967165 1.9067899232111085 0.9337659598085248 1.091745271763779 0.5611130914494357 0.06077538642514402 0.23996352493599704 1.7421658518525502 0.02365162755853545 0.02090556740509295 392.0666681298788 -2.593359921967165 0.15797931195525416 LQFHDVAGDIFHQQCK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQFHDVAGDIFHQQCK 16 0 P11413;P11413-3;P11413-2 P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ; 225.37 4.0108e-15 3560500000.0 4028300.0 3789800.0 3808000.0 3434600.0 3509000.0 4204100.0 4123300.0 2863100.0 5557600.0 4173500.0 False True 4006612.0803862056 3915941.2020175224 4344133.300270645 3869420.007842528 3955850.350527526 3913480.4623869043 3923840.2264643647 3076759.060527212 4188003.948024618 3907143.656886881 1.0254580922111727 1.002251656428126 1.1118437615196228 0.9903449546888659 1.012466061634256 1.0016218511671189 1.0042733441725527 0.7874701650920868 1.071883789233775 1.0 21.89768287047364 1.973825067368632 24.636935066190947 0.9210955965683201 1.0231150533589772 0.10947885747311614 0.07535352202271256 779.7393463561962 733921.7182216919 0.029800533460541012 0.019314426415820266 94.15102823638938 -1.973825067368632 0.10201945679065716 LQFHNVKPECLEAYNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQFHNVKPECLEAYNK 16 1 O75323;F8WBI5 O75323 GBAS Protein NipSnap homolog 2 0 ; 220.61 6.8069e-15 2125580000.0 1044120.0 962950.0 1143100.0 776970.0 1103990.0 2089660.0 1145360.0 948560.0 1595980.0 1336390.0 False True 1038498.5739326389 995001.2086344338 1304038.5439966838 875334.3223354717 1244576.5826386085 1945206.7227305314 1089954.5610999013 1019346.3638900823 1202672.1140363358 1251100.4460589595 0.8300681030080126 0.7953008183865224 1.0423132276105267 0.6996515148666334 0.9947854998846004 1.5547966023495938 0.8711966849131281 0.8147598117330097 0.9612914117526089 1.0 20.254766191932404 4.248115042734095 24.795598476843953 0.9803104153228344 0.8126843677471033 0.10017151557700266 0.21296109831477444 481.65602216380523 1249961.5075533236 0.05501134504484265 0.1464960334369038 17705.779146512352 -4.248115042734095 -0.16762604757573107 LQFIADHCPTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQFIADHCPTLR 12 0 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;J3KSA5;J3KRJ4;J3QLT0;J3QS84;J3KRE8;J3QLE8;J3KTB0;J3QS88;J3QL53 Q13098-7 GPS1 COP9 signalosome complex subunit 1 0 107.14 0.0018461 626640000.0 319440.0 438850.0 372410.0 344870.0 335900.0 370820.0 371870.0 307870.0 438790.0 406160.0 False True 317720.17053312017 453456.85695957294 424842.0909542517 388530.5066396822 378674.87396471837 345186.0862163865 353881.22741864657 330844.8227321834 330656.0839847638 380238.52106892964 0.8355812284350955 1.192558964527874 1.1173041851728545 1.021807326484024 0.9958877204239709 0.9078146139586188 0.930682210797088 0.8700981210480982 0.8696017516984359 1.0 18.53654516986351 2.973492392208302 1.8669635471918489 0.9035115575503511 1.0609244404814735 0.28881735419708265 0.09193922176316478 0.36235629360382937 2.5442623333168672 0.03084754856415117 0.035710887551259236 940.7893495322515 -2.973492392208302 0.15741288293112243 LQGAEHGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQGAEHGKK 9 1 O43237;O43237-2;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 72.2 0.030785000000000007 155570000.0 320130.0 313490.0 326750.0 311790.0 328580.0 298310.0 381100.0 341870.0 517380.0 354890.0 False True 318406.4556497867 323924.32514129346 372753.55983808695 351262.58203145146 370422.71535375755 277688.53184620646 362664.73705662217 367382.07538068463 389878.6315368109 332240.6163633851 0.9583610189957407 0.974969071171612 1.121938563436781 1.0572535828890386 1.1149230320130732 0.8358054920729113 1.0915725507201712 1.1057711107147232 1.1734827481489642 1.0 18.341868927761634 2.032345637249711 24.99997375647048 1.1032960763731985 1.0160922890687794 0.17165378394191866 0.08706027998875779 321.5017795009052 248487.71001324736 0.03254664967103869 0.024037170738192545 107.73222693533212 -2.032345637249711 -0.08720378730441913 LQGAVVPPVNGVEIHVDSVLPVPPIEFGVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQGAVVPPVNGVEIHVDSVLPVPPIEFGVSPK 32 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 LQGAVVPPVNGVEIHVDSVLPVPPIEFGVS(1)PK;LQGAVVPPVNGVEIHVDSVLPVPPIEFGVS(1)PK 186.52 6.6675e-20 175934000.0 521290.0 422100.0 404500.0 396450.0 416700.0 552680.0 499810.0 510930.0 766270.0 541460.0 True False 518483.43256076425 436149.34333516215 461450.08402297174 446640.5293510655 469764.2750255973 514474.5324687791 475632.28084038413 549058.1910499705 577433.025991944 506903.5592327715 1.0228443322542844 0.8604187826088654 0.9103311184506254 0.881115394074333 0.9267330372203606 1.0149357271183235 0.9383092151893384 1.0831610491766963 1.1391378408664619 1.0 18.951351768309834 2.038247505942502 1.2915189901005428 1.0832505103218166 0.9180473732750287 0.508734466894242 0.05983486521473624 0.32619336150845274 1.014016015002967 0.04085411032796643 0.019680741694949065 109.20625293877143 -2.038247505942502 -0.1652031370467879 LQGDANNLHGFEVDSR ddPTM_BT-474_Trastuzumab_2h_R1 6 LQGDANNLHGFEVDSR 16 0 C9JLU1;P52434;P52434-3;P52434-2;P52434-5 C9JLU1 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 0 ;;;;; 235.4 1.0590999999999999e-19 6876910000.0 4787590.0 5883330.0 5516500.0 5855860.0 5782920.0 5877210.0 6084750.0 5367450.0 6471490.0 6088060.0 False True 4761814.147391257 6079153.08250191 6293175.249722425 6597211.27558514 6519340.583947747 5470932.3061642125 5790407.39649772 5767996.374358838 4876678.003023216 5699514.7985496055 0.8354771091397163 1.0666088776625184 1.1041598227491036 1.157504017230375 1.1438413293718912 0.9598943944415125 1.0159474273092939 1.012015334327522 0.855630378267325 1.0 22.442407676755767 2.7131614737455156 24.741157811161788 0.9769123294156419 1.0695025748566136 0.19261445330243987 0.09356059480311675 1188.9357197045501 1158133.353178395 0.0311965063074854 0.029422568989866532 516.60841221264 -2.7131614737455156 0.09259024544097172 LQGEGLSVAGIVCHVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQGEGLSVAGIVCHVGK 17 0 Q13268;C9JZP6;Q13268-2 Q13268 DHRS2 Dehydrogenase/reductase SDR family member 2, mitochondrial 0 ; 202.35 1.0669e-11 3320600000.0 2622390.0 2732870.0 2750260.0 2495330.0 3276100.0 4920700.0 2921100.0 2580250.0 3917400.0 3461800.0 False True 2608271.343614917 2823831.925895201 3137472.7023115396 2811238.5221480518 3693291.9160339744 4580543.5910818605 2779795.2333143507 2772801.3572440147 2952009.2604706422 3240864.960203907 0.8048071658779671 0.8713204532031883 0.9680973261268305 0.86743463756391 1.1396006811100212 1.413370704218933 0.8577325088977027 0.8555744812858717 0.9108708004559712 1.0 21.627947477266883 3.276959272691652 24.82844873228225 1.0168343701222702 0.8838853179296386 0.17842038692733064 0.15777072855473828 350.26491541669895 226477.78360107224 0.04950099280226894 0.06702328278593483 1892.1661665896552 -3.276959272691652 -0.13294905219263153 LQGGAGPELIS(ph)EER ddPTM_BT-474_Trastuzumab_2h_R1 1 LQGGAGPELISEER 14 0 Q9BV36-2;Q9BV36-5;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 1 LQGGAGPELIS(1)EER 140.81 1.0327e-05 163190000.0 76744.0 83592.0 113660.0 132540.0 132270.0 176440.0 136070.0 124120.0 64207.0 107520.0 True False 76330.81883105997 86374.30918756888 129662.34004956967 149319.55041036778 149113.8004742877 164243.11809508465 129487.77426212162 133382.4646685892 48384.04517972092 100657.9815474967 0.7583185919046304 0.8580969721393837 1.2881476268067913 1.4834347770018568 1.4813907271121518 1.6316949294039294 1.2864133799565733 1.3251056957232055 0.4806776813509847 1.0 16.619102047912644 4.273310208249216 4.587030876719544 1.2937331652391626 0.7873410893020469 0.2392259608745212 0.3058543742195944 0.24188662750954007 11.479895618050266 0.07591655634182169 0.21162928335637365 18763.342592364428 -4.273310208249216 -0.5063920759371157 LQGIDLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQGIDLDR 8 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7 Q92878-2 RAD50 DNA repair protein RAD50 0 ;;; 119.86 0.0037508 353331000.0 932605.0 1151990.0 1057730.0 1118120.0 1029840.0 1119840.0 1040120.0 1036840.0 1269610.0 1125860.0 False True 927583.9583021556 1190333.290757339 1206649.1900460266 1259673.877356573 1160984.0196600934 1042428.0966198109 989805.4219557433 1114214.2657668397 956731.6274023919 1054006.6509027602 0.880055128217338 1.129341346886013 1.1448212295553615 1.1951289645825842 1.101495914343336 0.9890147236992933 0.9390884024384207 1.0571226138018308 0.9077092887250265 1.0 20.00745253989907 2.7339985846959376 7.662267378697634 0.9848630857699392 1.1013221252488048 0.2907596761676544 0.08599111347752739 0.16689350987025603 86.54483197604857 0.027425128616185943 0.02717251333591076 541.9991241005447 -2.7339985846959376 0.1164590394788656 LQGKPQSHELK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQGKPQSHELK 11 1 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 0 91.961 0.0062193000000000005 427060000.0 605410.0 561460.0 581310.0 523960.0 465000.0 628760.0 624110.0 820240.0 917850.0 874030.0 False True 602150.5398273738 580147.8566902624 663153.395162902 590293.2822771702 524214.993729068 585295.3011418355 593919.4149682727 881450.4738943256 691658.1660598824 818248.6571052691 0.7359016536093209 0.7090116820266598 0.8104546086381003 0.7214106337374996 0.6406548781681982 0.7153024891143038 0.7258422116687493 1.0772403550439624 0.845290927218594 1.0 19.642179803984078 1.7541726496935324 24.999999999999996 0.974645740792243 0.7220217590014996 0.7564889583544343 0.06539429300752608 2.41511733708231 3872.14980252823 0.028914023975431358 0.01603440767174666 56.77702722904483 -1.7541726496935324 -0.2526239817907434 LQGPPT(ph)PAGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LQGPPTPAGK 10 0 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 LQGPPT(1)PAGK;LQGPPT(1)PAGK;LQGPPT(1)PAGK;LQGPPT(1)PAGK 143.31 0.00038235 2557900000.0 4303630.0 4106000.0 3535330.0 3557690.0 3648150.0 4866800.0 4475000.0 4093750.0 5826800.0 4357820.0 True False 4280459.734258246 4242665.727870582 4033073.7343607736 4008093.189221823 4112720.2782208524 4530369.571214908 4258527.153839892 4399246.4126412915 4390863.215119812 4079700.1966825924 1.0492093849785582 1.0399454673950073 0.9885711057004304 0.9824479731331738 1.0080937519784199 1.1104662972290897 1.0438333574860996 1.0783259064522777 1.07627105018409 1.0 21.96003170665544 2.772697790273928 24.79717308931215 1.0660141518107578 1.0119870769669574 0.3473306907709025 0.03268918739556072 575.7479707328436 418221.1087813556 0.00982199224840728 0.01041722917839118 592.5128729447373 -2.772697790273928 -0.054027074843800316 LQGQLQGGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 LQGQLQGGSR 10 0 Q9UP83-3;Q9UP83;Q9UP83-2;U3KQU7 Q9UP83-3 COG5 Conserved oligomeric Golgi complex subunit 5 1 LQGQLQGGS(1)R;LQGQLQGGS(1)R 140.63 4.0861e-05 818560000.0 648720.0 666360.0 614880.0 698030.0 712060.0 712050.0 736030.0 659590.0 837210.0 685250.0 True False 645227.3635995678 688539.389776873 701449.7593672306 786400.5264293714 802736.6202897207 662827.6594854059 700425.4169923523 708811.955130154 630890.813539242 641516.7583279588 1.0057841127662515 1.0732991474322098 1.093423905550777 1.2258456481776656 1.25131044492425 1.0332195548764644 1.091827154785375 1.104900138505489 0.9834362163563551 1.0 19.291127427734384 1.2637736077448676 5.695979824744522 0.9905484422899492 1.1134366723030695 0.29842269626814155 0.07235772714828731 0.20743488267760649 19.120961453817156 0.058810802796826406 0.019244279002607993 18.355812284795217 -1.2637736077448676 0.12288823001312033 LQGS(ph)GVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 4 LQGSGVSLASK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 LQGS(1)GVSLASK;LQGS(0.964)GVS(0.034)LAS(0.001)K;LQGS(0.99)GVS(0.01)LASK;LQGS(1)GVSLASK 167.21 2.0467e-05 981330000.0 1686610.0 1411510.0 1365550.0 1182690.0 1379110.0 2179600.0 1820340.0 1789290.0 2602970.0 1909280.0 True False 1677529.4791599887 1458491.257074188 1557807.5704266245 1332418.4327360636 1554731.4838746113 2028929.3822265181 1732283.1998259013 1922815.9056305184 1961502.9215110214 1787428.1157831536 0.9385157726608696 0.815971979066222 0.8715357874652644 0.7454388912038963 0.8698148306755333 1.135111037087806 0.9691484566734082 1.075744466953316 1.0973884231711315 1.0 20.76945379214471 2.837886510291293 5.99307413842307 1.0536813946807801 0.8394477359708091 0.7307099271292616 0.06295132221915112 0.11475258347486388 5.760539161112467 0.018459953597137806 0.019615904714644656 688.4723614361803 -2.837886510291293 -0.21423365870997102 LQHALEDQIYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQHALEDQIYR 11 0 Q8ND04;Q8ND04-2;Q8ND04-3 Q8ND04 SMG8 Protein SMG8 0 ;;; 170.68 1.5432e-05 2832690000.0 1962450.0 2250710.0 2306610.0 2198210.0 1941180.0 2137680.0 2315850.0 1852970.0 2846240.0 2321980.0 False True 1951884.3872486928 2325623.5217670747 2631360.638586471 2476503.1606124532 2188377.7667247127 1989907.2131574505 2203823.4880938837 1991248.030591007 2144822.2896620096 2173789.248452909 0.897917950711116 1.069847743253964 1.21049482623912 1.1392563296441856 1.006711100573428 0.9154094466948314 1.0138165370273822 0.9160262578390169 0.9866744401226958 1.0 21.051780645406787 3.0449173959446165 5.958360531134551 0.9613021938242456 1.087333716929059 0.3074851787092461 0.07946379142489515 0.21799686389303186 18.678926773027573 0.02409264907222466 0.028683663974654456 1108.9638670951456 -3.0449173959446165 0.12603152310481325 LQHFQELGEEKDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQHFQELGEEKDNR 14 1 Q13439-5;Q13439-3;Q13439-4;Q13439;H0Y6I0 Q13439-5 GOLGA4 Golgin subfamily A member 4 0 ; 144.68 5.28e-06 234610000.0 266900.0 277580.0 280730.0 250210.0 268010.0 318350.0 312580.0 261350.0 399310.0 318400.0 False True 265463.0400553776 286819.0824993468 320254.34385109716 281886.56034539075 302139.4848802742 296343.21381529234 297459.31122844154 280853.2641084095 300905.4009798672 298079.4394040454 0.8905781646198803 0.9622236376745353 1.074392599809589 0.9456759611094636 1.0136206827426477 0.994175292357553 0.9979195875540974 0.9422094481589323 1.009480565252913 1.0 18.185337340564896 4.653969217513614 3.982800471867265 0.9924826277238058 0.8886024544586109 0.44959315054888904 0.03531473041009301 0.19411675741234558 5.118043220759027 0.008325778459181567 0.04671215548462551 45078.47521039904 -4.653969217513614 -0.10388017326519494 LQHTLQQVLDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQHTLQQVLDQR 12 0 O00273;O00273-2 O00273 DFFA DNA fragmentation factor subunit alpha 0 72.681 0.041237 346180000.0 199100.0 284430.0 308660.0 327080.0 246960.0 239520.0 297160.0 227640.0 327870.0 244770.0 False True 198028.06772208956 293897.0806084342 352116.6450791854 368488.2944637323 278408.89215339907 222962.54616943267 282785.23553856194 244627.652732498 247070.831732912 229148.56904186003 0.864190723730483 1.2825612738377876 1.536630346641449 1.6080759133888294 1.2149711137953487 0.9730043137590035 1.2340693931494888 1.0675504270236587 1.0782124137453286 1.0 17.805923751016774 3.000429296295116 24.9999844988159 1.0883232460247734 1.3447883465375097 0.26570067932945596 0.19591965438790868 21.01438939513343 1223620.011115357 0.05927499466530557 0.07023925719126331 1000.988979968105 -3.000429296295116 0.2564651005127363 LQHYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQHYAK 6 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ; 91.093 0.048284 1533520000.0 4061800.0 4718700.0 4199200.0 4008500.0 4077300.0 4168500.0 4461200.0 4068900.0 5934400.0 4673100.0 False True 4039931.7201084075 4875759.076985617 4790410.859899296 4515975.688999239 4596519.986949522 3880341.406593521 4245394.712561015 4372541.979455555 4471946.63688594 4374858.757157807 0.9234427770950507 1.114495198046857 1.0949864043179895 1.0322563400728189 1.05066705969171 0.8869638134590757 0.9704072630036402 0.9994704337143544 1.0221922318221783 1.0 22.06080500943775 2.885299415079795 22.536992528599527 0.9764481085360531 1.0494246994789587 0.24854532975474786 0.058051236283689016 13.472458099978951 2617.474873020622 0.017595134132213888 0.018662475788533205 767.8907128053163 -2.885299415079795 0.07297659094290554 LQIDVDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQIDVDGR 8 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;;; 190.26 0.0004359 714065000.0 1246620.0 1580030.0 1298660.0 1378420.0 1405610.0 1491760.0 1228890.0 1276470.0 1583050.0 1501060.0 False True 1239908.3364325012 1632620.3434016944 1481500.0398449253 1552927.830667415 1584606.101796806 1388638.142425322 1169443.895884316 1371726.6731833243 1192928.5392832109 1405261.0656778773 0.8823330886452673 1.1617914872025166 1.0542525343006437 1.1050813749815984 1.1276239984862992 0.9881709358790662 0.8321897791427058 0.9761365391003867 0.8489017225477316 1.0 20.422406744732108 2.4871261200113706 7.293307042748282 0.9153053725827409 1.0717935282439344 0.4199556476987947 0.08410160993763617 0.12614509115401884 41.102960258221394 0.026435479724270457 0.023486006803190632 306.99133681159606 -2.4871261200113706 0.15648815566119345 LQIT(ph)PDSNGEQFSSLIQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQITPDSNGEQFSSLIQR 18 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;K7ERN1;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 LQIT(0.989)PDS(0.011)NGEQFSSLIQR 163.62 1.8068e-09 0.0 36656.0 52914.0 49465.0 45921.0 49205.0 47145.0 41310.0 36537.0 42725.0 43669.0 True False 36458.648168864456 54675.21050281155 56429.24204251249 51734.593891613775 55470.96508911568 43885.97711739269 39311.67748047511 39263.5764711267 32195.996235668612 40882.007033088135 0.8918018173461102 1.3373905654524199 1.3802952970689792 1.2654612052128953 1.3568552308163313 1.0734790266503618 0.9615887363029396 0.9604121548961245 0.7875346288554415 1.0 15.31917840424001 2.4530447613060025 2.8661273972517836 0.9273347778570762 1.2594657491625196 0.5353780220062072 0.13945606149365092 0.2003904858469985 3.375010881865835 0.05157339680544389 0.04340966795956108 283.82115385097006 -2.4530447613060025 0.33213097130544345 LQIVEMPLAHK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQIVEMPLAHK 11 0 P50454;E9PKH2;E9PR70;E9PPV6 P50454 SERPINH1 Serpin H1 0 ; 126.76 0.00030066 994490000.0 1338190.0 1563470.0 1598790.0 1300880.0 1126210.0 1370050.0 1626140.0 1319690.0 2107920.0 1471210.0 False True 1330985.333726886 1615509.1538124266 1823885.7350682013 1465571.2746177695 1269626.1679303516 1275341.668250799 1547477.3957419447 1418171.9690500363 1588451.3606808798 1377316.1182337508 0.9663615462757535 1.1729399899016146 1.3242317511009198 1.0640776327348842 0.9218117403276314 0.9259614778096678 1.1235455501140916 1.029663379579612 1.1532946864209253 1.0 20.39342829064674 3.494076781264938 24.649852072524027 1.0264232496136878 1.162654112906981 0.2275306550556092 0.10583847547476963 865.0278378189681 1257570.536938482 0.028961082375564082 0.0436591970237342 3119.4410381590797 -3.494076781264938 0.13623086329329315 LQIWDTAGQESFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQIWDTAGQESFR 13 0 P61019;P61019-2;E9PKL7;A0A3B3ITL1;Q8WUD1 P61019 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B 0 ;; 128.54 0.00038178 1492420000.0 1009640.0 815510.0 844910.0 887570.0 754570.0 1156810.0 1138780.0 636240.0 1708040.0 916190.0 False True 1004204.2104215489 842653.7573637947 963865.9839106286 999936.2709953984 850660.0168132092 1076842.4475378322 1083692.8608379434 683719.4595612577 1287116.4285634037 857717.9698102773 1.1707860226406048 0.9824368697209238 1.1237563136561435 1.1658100986465039 0.9917712427097344 1.255473810087043 1.2634606000823914 0.7971378513994442 1.5006289641431985 1.0 19.71014382094556 5.074531901906265 19.394313394239425 1.1060971302446232 2.9769340545955205 0.0016467677593650087 0.18484702238890208 1725.6880977953865 497820.1186523585 0.04039122397484746 15116.486374977816 118722.1907426692 -5.074531901906265 1.8708369243508973 LQKEEEIEFLYNENTVR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQKEEEIEFLYNENTVR 17 1 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;; 238.8 2.6616e-20 2094120000.0 1893860.0 1778140.0 1663330.0 1554600.0 1714150.0 1961390.0 1950730.0 1854710.0 2628310.0 2034440.0 False True 1883663.668187627 1837324.31499167 1897512.4060764622 1751412.200603273 1932436.8419369517 1825803.725915429 1856365.7373877333 1993117.8782265494 1980598.218049622 1904600.2974282864 0.9890073369888006 0.9646771122909847 0.9962785412974078 0.9195694251272261 1.0146154258960538 0.9586282898205709 0.9746747072833694 1.0464756730941316 1.039902293790436 1.0 20.861056832438017 1.764082092020581 9.316511179665198 1.0320540271684862 0.9732832237607091 0.4745274753229618 0.026381952282448398 0.1365656812892942 40.573876553748164 0.01148191962008333 0.0063109262477986415 58.087420623093024 -1.764082092020581 -0.05877080340777707 LQLATLEAGPGAAGAGS(ph)E ddPTM_BT-474_Trastuzumab_2h_R1 2 LQLATLEAGPGAAGAGSE 18 0 C9JI98 C9JI98 TMEM238 Transmembrane protein 238 1 LQLATLEAGPGAAGAGS(1)E;LQLATLEAGPGAAGAGS(1)E 199.49 1.6960999999999999e-15 57988000.0 91285.0 121269.0 125399.0 105215.0 132331.0 145694.0 109412.0 101792.0 117039.0 119922.0 True False 90793.53170271692 125305.36535634138 143054.08921235258 118535.208212063 149182.56846271228 135622.51670678565 104119.32356557118 109388.23592930248 88196.30669225093 112268.47528961048 0.8087179546039414 1.1161224469567315 1.2742142337225726 1.055819168348788 1.3288019462086513 1.2080195830301474 0.927413713395345 0.9743450745823521 0.7855839002421438 1.0 16.776593353839093 2.2275130025270666 24.817335180393762 0.9258283258142261 1.1431838043307452 0.34054748962415404 0.14268335169418944 225.9900109349902 507659.67562544474 0.05361328099277163 0.039974746395934645 168.8546412838658 -2.2275130025270666 0.21735547851651904 LQLDSPEDAEFIVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQLDSPEDAEFIVAK 15 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 124.3 0.00022668 15629000.0 24423.0 32836.0 26644.0 25595.0 28053.0 29179.0 28542.0 26252.0 36022.0 31951.0 False True 24291.50928165038 33928.92641021884 30395.243606200416 28835.324375685523 31625.38326684201 27161.924409977753 27161.314418971695 28211.057544954903 27144.860770070332 29911.859825372685 0.8121029392176125 1.134296784228665 1.0161602716664813 0.9640097454330141 1.0572857539274716 0.9080653817098225 0.9080449887616869 0.9431395342734563 0.9074949176862868 1.0 14.868429995035973 2.722039974506543 24.726665393511453 0.9288972638116332 1.0036685187163592 0.13016044154926454 0.08059160960129645 1214.368525899059 1817558.886212307 0.02441471861285716 0.023083664360358667 527.2783923722336 -2.722039974506543 0.07477125490472603 LQLEETDHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQLEETDHQK 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 174.24 3.1660000000000007e-06 2330950000.0 1543500.0 1456200.0 1532290.0 1331670.0 1255770.0 1925420.0 1699710.0 1628210.0 2178840.0 1715190.0 False True 1535189.96749897 1504668.7367085111 1748023.1130965622 1500259.2854607976 1415684.8659680693 1792320.247351154 1617488.533777255 1749715.2980828544 1641894.0769601923 1605725.1057519622 0.9560727187983024 0.9370649629370239 1.0886191583072757 0.9343188819098803 0.881648335008814 1.1162061556681018 1.007325928942105 1.089673003065778 1.022525008221312 1.0 20.61479349921942 2.7311443953668517 24.999353543285526 1.0523534241682078 0.9640652868540507 0.3504894527014938 0.05925537015368389 655.7160650110756 2210349.2284561098 0.018904423301296266 0.018130496013756565 538.4487776181522 -2.7311443953668517 -0.08828813731415708 LQLELS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 2 LQLELSK 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 LQLELS(1)K;LQLELS(1)K 98.943 0.011425 169536000.0 446550.0 337550.0 301760.0 261740.0 248420.0 346110.0 356820.0 346450.0 526730.0 361610.0 True False 444145.82441636926 348785.1476967164 344245.18505506066 294876.25716319284 280054.8144993013 322184.2303553038 339559.2534152295 372303.858237454 396924.4493203917 338531.74021010305 1.3119769039698284 1.0302878763458039 1.0168771319386822 0.8710446381783395 0.8272630930425927 0.9517105549847306 1.0030352049249172 1.0997605660443863 1.1724881367816453 1.0 18.36893157942461 4.766198480862898 2.8807096977609756 0.9915959073851968 1.3806527346053867 0.5059086839958877 0.09403167233341263 0.437674342775275 4.8464950156650835 0.02629618694813479 0.4096432731485055 58371.18107566194 -4.766198480862898 0.38905682722018997 LQLERPVS(ph)PETQADLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQLERPVSPETQADLQR 17 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 LQLERPVS(0.999)PET(0.001)QADLQR;LQLERPVS(0.873)PET(0.127)QADLQR;LQLERPVS(1)PETQADLQR 261.26 1.6835000000000004e-27 2026070000.0 1255090.0 1451270.0 1428750.0 1326120.0 1316100.0 1484440.0 1356970.0 1167510.0 1303170.0 1322740.0 True False 1248332.7348936081 1499574.6446387598 1629905.5810823743 1494006.656029853 1483697.5338641403 1381824.1567958936 1291328.1769712006 1254635.5246956537 982021.215083353 1238321.6007453122 1.0080844379539777 1.2109735013393987 1.3162215535135449 1.20647710185355 1.1981520252664113 1.1158847232933764 1.042805177745414 1.0131742222218547 0.7930259913840646 1.0 20.239954610489306 2.002028238573873 1.2674975863181603 0.912244318605659 1.1968116234309267 0.6080081879175763 0.0891771001706388 0.29872177056630717 0.8903083501558315 0.06505466930957629 0.030392425766426815 100.4681114247977 -2.002028238573873 0.2845673048252677 LQLGT(ph)PPPLLAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQLGTPPPLLAAR 13 0 Q9P2N5 Q9P2N5 RBM27 RNA-binding protein 27 1 LQLGT(1)PPPLLAAR;LQLGT(1)PPPLLAAR 110.22 0.0092224 85171000.0 414570.0 493050.0 472740.0 499690.0 461510.0 453390.0 493200.0 443180.0 535110.0 529900.0 True False 412338.0011830567 509460.8711949814 539297.6828702586 562950.7027656294 520280.56291591784 422048.21646525984 469342.0317930363 476252.34202244156 403239.3106066384 496081.32832978526 0.8311903263348431 1.0269704625050948 1.0871154628737487 1.1347951850173057 1.0487807809005973 0.8507641637838269 0.9460989660167715 0.9600287590462148 0.8128491994735442 1.0 18.920217132064582 2.7564379391390377 24.24559680617574 0.9182468661202148 1.0353021099185336 0.27901984999908147 0.08908638360716481 736.0726519016688 998275.370412737 0.027801921410139697 0.029426744406349015 570.7395114321125 -2.7564379391390377 0.11705524379831878 LQLHESQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LQLHESQK 8 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;; 146.23 0.00055664 1505800000.0 1677010.0 2798890.0 3510980.0 3055120.0 2046680.0 2718770.0 3193140.0 2513220.0 4215050.0 3015160.0 False True 1667981.1644933259 2892049.361685266 4005295.46601477 3441897.8787514865 2307312.566377222 2530827.8291961756 3038675.6192206307 2700769.238272575 3176307.4062763005 2822729.9073916515 0.5909106500503362 1.0245575937365077 1.4189439292531782 1.2193507674037358 0.8174046550947902 0.8965887322654938 1.0765024352005836 0.9567933620571675 1.125260832769995 1.0 21.42865966059552 3.2476303505109554 24.99955461064853 0.9782261655217901 1.0860563988020326 0.033147900491028004 0.21030266269953649 686.638665171358 1892620.4730890552 0.06129217304728555 0.08182387978789925 1768.6029721346536 -3.2476303505109554 0.10783023328024255 LQLKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQLKPR 6 1 Q15056;K7EJP0;Q15056-2 Q15056;Q15056-2 EIF4H;TNNI3 Eukaryotic translation initiation factor 4H 0 103.41 0.031656000000000004 1330300000.0 920120.0 1112600.0 1156600.0 983230.0 661710.0 933450.0 1034400.0 831200.0 1542600.0 938020.0 False True 915166.1761549423 1149632.2184190974 1319439.2266525826 1107706.817187158 745974.8462375517 868922.7986049474 984362.1202082663 893228.3647480768 1162446.8997809815 878154.7605206751 1.0421468029306387 1.3091453467011418 1.502513322219265 1.261402735584303 0.8494799319828872 0.9894870900543158 1.1209437840143561 1.0171650885528016 1.3237380835830623 1.0 19.74411568818434 3.416767582590067 11.736802153657782 1.0509586691629798 1.3028505504690169 0.34674495696309393 0.15339178892228753 0.7004781795354633 134.08559261717525 0.042674327698807434 0.057788882074372945 2610.763801864344 -3.416767582590067 0.2518918813060371 LQLLEDDKENR ddPTM_BT-474_Trastuzumab_2h_R1 7 LQLLEDDKENR 11 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;;;;; 206.69 2.3279e-08 17859400000.0 15760310.0 14861640.0 13270410.0 12526350.0 12040880.0 15800300.0 16212250.0 14666470.0 22147100.0 15806970.0 False True 15675458.242095051 15356300.703348896 15138768.379528524 14112184.625644414 13574214.696112804 14708062.450905487 15428001.53069071 15760956.466225637 16689243.96093568 14798155.641572135 1.0592845907133406 1.0377172044473417 1.023017242567683 0.9536448303057012 0.9172909803691387 0.9939118635559183 1.0425624587532492 1.0650622177502125 1.1277921631024714 1.0 23.81891404191934 2.0634996419161995 3.0497806619695296 1.0694864773044663 0.9949118004645501 0.2884255133038691 0.04773077327368806 0.3272752522217569 6.039059772849013 0.02336957247539402 0.014787698182473417 115.74430777587045 -2.0634996419161995 -0.07457467683991625 LQLLSNLFHGMDK ddPTM_BT-474_Trastuzumab_2h_R1 4 LQLLSNLFHGMDK 13 0 Q7L2H7;J3KNJ2;E9PN86 Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M 0 ;;; 193.06 2.1854e-06 1117980000.0 1230275.0 1369400.0 1322850.0 1214816.0 1105285.0 1460890.0 1480550.0 1374100.0 1895220.0 1495660.0 False True 1223651.336096401 1414979.6511802177 1509095.7815816777 1368611.5810421093 1246036.493212542 1359902.1128651565 1408930.1402497569 1476642.3195384187 1428168.425646902 1400205.6983010506 0.8739082676074859 1.0105512732144235 1.077767204784804 0.97743608864235 0.8898953166127157 0.971215953852497 1.0062308287698674 1.0545895658974342 1.01997044247126 1.0 20.417207352294348 2.080290562937736 4.00008616894624 1.0308942099207876 0.9710246488468983 0.18235902881713384 0.05539785453428545 0.3930428351758752 12.166308304297743 0.023954948538584864 0.016631611067369205 120.30690738351599 -2.080290562937736 -0.0598695610738893 LQLLTGEHRPEDEEELEKELYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQLLTGEHRPEDEEELEKELYR 22 2 Q13505-3;Q13505;Q13505-2 Q13505-3 MTX1 Metaxin-1 0 176.54 1.4439e-13 40899000.0 65361.0 77467.0 72654.0 65825.0 70069.0 115590.0 85173.0 83716.0 117210.0 99783.0 False True 65009.103638289795 80045.44226520964 82883.05168011118 74158.43825081078 78991.87181849898 107599.53536959227 81052.85659754314 89963.31302123437 88325.16603353356 93414.76351147577 0.6959189446570037 0.8568821378579656 0.8872585934441637 0.7938620777185889 0.8456037231073762 1.151847216916349 0.8676664538960803 0.9630524088430904 0.9455161337820337 1.0 16.511362954769286 2.9730950738563253 24.78467658737445 0.9745414299201395 0.8178357096618564 0.5212385351300358 0.08140319390518116 563.5620739721782 519150.7043025424 0.024075091801442693 0.025607594209358556 939.9290532179625 -2.9730950738563253 -0.1567057202582831 LQLNGNLQLELAQVLAQERPK ddPTM_BT-474_Trastuzumab_2h_R1 3 LQLNGNLQLELAQVLAQERPK 21 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 439.8 7.644299999999993e-198 1568527000.0 1131135.0 989425.0 1024272.0 983577.0 994849.0 1348350.0 1292060.0 1151223.0 1527648.0 1355095.0 False True 1125045.0948409142 1022357.4130049571 1168480.5944681754 1108097.7473515777 1121537.1232179974 1255141.7381744925 1229558.121651481 1237133.1060519444 1151179.6198344463 1268611.6769448018 0.8868317352638286 0.8058868064868369 0.9210703446165874 0.8734727635648208 0.88406653005039 0.9893821418996008 0.9692155164554581 0.9751865984958713 0.9074326216252658 1.0 20.274819095965018 2.8117213057613255 5.426854514323881 0.9674251277338584 0.8719401995439063 0.6428639001359726 0.03505213348504637 0.13867118124867678 7.501324876493071 0.010553125712402392 0.01116969872836714 648.2183272016377 -2.8117213057613255 -0.09548492818995202 LQLPVWEYK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQLPVWEYK 9 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 168.8 0.00013715 273460000.0 925090.0 1001740.0 825470.0 812470.0 833160.0 915000.0 954640.0 939570.0 1174010.0 1013210.0 False True 920109.418227162 1035082.3103353832 941689.000886138 915328.6186955745 939257.9874737842 851748.2036783191 908460.4161210544 1009685.4844397871 884690.9664280238 948546.0703472759 0.9700208002446282 1.0912304027114097 0.9927709684584667 0.964980666000187 0.9902080846003704 0.897951328148439 0.9577398974289719 1.0644559247081453 0.9326810727328468 1.0 19.855358320659146 4.0170313186673114 24.858465611825324 0.9774182663634494 1.0334693988434984 0.1727464561754246 0.04946662432075647 387.51675813514987 565600.7920249155 0.012602254618918502 0.02721477566908068 10399.95161228322 -4.0170313186673114 0.056051132480049004 LQLS(ph)PWESSVVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQLSPWESSVVNR 13 0 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 1 LQLS(0.468)PWES(0.409)S(0.123)VVNR;LQLS(1)PWESSVVNR 166.52 3.5115e-05 150461000.0 209930.0 213020.0 189430.0 191398.0 183809.0 214698.0 179315.0 171144.0 226770.0 197299.0 True False 208799.76020541578 220110.2419266905 216100.0974449236 215628.9671755207 207215.98662870133 199856.4326047297 170640.84840017903 183915.63433162295 170885.57206231885 184707.2089038277 1.130436442868521 1.1916710952050402 1.1699602778224067 1.1674095908611404 1.1218619341305371 1.0820175010537343 0.9238450919857023 0.995714435961095 0.9251700194944453 1.0 17.49488064853651 2.5228235816089186 2.0701349566922644 0.9619847033119845 1.16338606643194 0.8917225754037671 0.03182153607133566 0.08867277133244449 0.763916978131516 0.011837862349767081 0.01004432431586713 333.29099633969787 -2.5228235816089186 0.2014013631199555 LQLWDTAGQER ddPTM_BT-474_Trastuzumab_2h_R1 9 LQLWDTAGQER 11 0 P20340-2;P20340;P20340-4;J3KR73;Q9NRW1-2;Q9NRW1;C9JU14;C9JB90;Q14964 P20340-2;Q14964 RAB6A;RAB6B;RAB39A Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A 0 ;;;;;;;; 251.64 5.3353000000000006e-20 5375270000.0 3737340.0 4844850.0 4707400.0 4256940.0 4724250.0 4862070.0 4317150.0 3889820.0 4495750.0 4315410.0 False True 3717218.5766975074 5006107.903476331 5370161.002545701 4795868.167526106 5325855.234676442 4525966.544981683 4108312.9613854494 4180098.120505735 3387832.6524636005 4039996.8391916216 0.9201043279631129 1.2391365891459516 1.3292488128827935 1.1870970098297726 1.3182820300775564 1.1202896252481476 1.0169099444660699 1.0346785621104957 0.838573094810016 1.0 21.945922733567492 2.187710806650343 1.7874476298600015 0.9592131270563011 1.20821948445564 0.4585908304760168 0.11620924827716908 0.32280913368512637 2.033898806479507 0.062239370147914676 0.037296507877419616 154.0674188224143 -2.187710806650343 0.24900635739933885 LQMEAPHIIVGTPGR ddPTM_BT-474_Trastuzumab_2h_R1 9 LQMEAPHIIVGTPGR 15 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;J3KS25;J3QKZ9 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 ;;;;;;;; 199.58 7.350399999999998e-09 15432680000.0 5198860.0 6402700.0 5754240.0 6077810.0 5587190.0 5718280.0 6066910.0 5577750.0 6709910.0 5978090.0 False True 5170869.915407641 6615809.998986122 6564386.975249309 6847260.122828104 6298685.528630343 5322988.762983228 5773430.385453135 5993990.028240598 5056342.588687547 5596563.178099656 0.9239366644947692 1.182120131311116 1.172931809460656 1.223475891351079 1.1254559857875306 0.9511174257467561 1.0316028251133824 1.071012662145251 0.903472797104107 1.0 22.41610971648906 2.8103529731521526 7.308698164533418 1.005512798206529 1.1374499313738684 0.3671015940971968 0.08643733283873728 0.3153508164771764 28.23570554883354 0.02653402486910252 0.028142286479932964 646.1791982787917 -2.8103529731521526 0.13193713316733935 LQNAHTGLDLTVPQHQEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQNAHTGLDLTVPQHQEVR 19 0 Q53T59;F6TR53;B5MC96;A0A494C0K6 Q53T59 HS1BP3 HCLS1-binding protein 3 0 ; 175.73 1.1591e-12 1299140000.0 240750.0 275010.0 252218.0 277820.0 259060.0 269620.0 256660.0 239670.0 286410.0 280310.0 False True 239453.82874983974 284163.5416029441 287728.1020818441 312991.9835144736 292049.75543108024 250981.80401721114 244244.37526358623 257555.39241960004 215828.09319737524 262420.37581453513 0.912481845232449 1.0828562405679043 1.0964396388380877 1.1927121990545422 1.1129080755432101 0.9564112666106074 0.9307370836028573 0.9814611065172264 0.8224517342735274 1.0 18.001520217812452 2.682653054882072 5.741042477649804 0.9389328971255325 1.0868332256448077 0.44607271013923977 0.07858701595840904 0.20331606225054533 14.825049477724642 0.026047787841213706 0.02470628740475638 481.5629374188089 -2.682653054882072 0.14790032851927515 LQNDPQLEAEYQQLQEDHQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQNDPQLEAEYQQLQEDHQR 20 0 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 0 ; 285.61 4.1081999999999995e-45 423980000.0 433320.0 456120.0 490020.0 486010.0 496660.0 526170.0 505690.0 456470.0 492210.0 519960.0 False True 430987.0532663783 471301.6784696372 559010.5566698064 547538.8161682715 559906.7070655453 489797.10637095186 481227.84277660254 490534.10930769413 370911.4407760903 486775.70763984823 0.8853914575072707 0.9682111721531103 1.1483945231782247 1.1248277339537662 1.1502355156141124 1.0062069628448655 0.9886028312913462 1.0077210132076406 0.7619760701997014 1.0 18.89289764712691 1.4200564138853171 5.392241373965189 0.8783751382311327 1.0426708998100602 0.29071365318253406 0.09640421052007783 0.24173304273191984 12.188689337946057 0.06736433680679721 0.025118352882128037 26.30609680037416 -1.4200564138853171 0.16429576157892756 LQPERGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 7 LQPERGSPK 9 1 S4R3H4;Q9UKV3;E7EQT4;A0A087WYN3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK 80.17 0.015062 16486900000.0 6963450.0 6197160.0 5610280.0 5875860.0 5110990.0 6491060.0 7290190.0 6175920.0 10660190.0 7093550.0 True False 6925959.558912026 6403428.724337678 6400158.65857206 6619743.273534499 5761844.2812888725 6042348.300511675 6937535.658469735 6636798.51108632 8033129.013727616 6640833.5659063095 1.0429352716305884 0.9642507466551405 0.963758328687853 0.996824149835634 0.8676387119336763 0.9098779905481705 1.0446784412858467 0.9993923872989822 1.2096567296866583 1.0 22.662932911185734 1.6272198634674044 2.1305576417564756 1.0980074360732401 0.9605252658239823 0.33980083282656715 0.07085251620086891 0.2934720533942997 2.8815610630871844 0.05079252863365819 0.0191633569964181 42.3857491438413 -1.6272198634674044 -0.1374821702492578 LQPFATEADVEEALR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQPFATEADVEEALR 15 0 P33992;B1AHB1 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 ;; 159.08 2.0858e-08 80078000.0 51163.6 65133.7 57133.6 54883.0 57381.6 75352.2 59651.5 56768.0 69497.1 65252.2 False True 50888.14086241031 67301.63583034682 65177.51426584642 61831.18217271924 64688.80663261045 70143.27977399933 56765.929054140885 61004.31642206311 52370.47091842918 61087.748730780986 0.8330334955815571 1.1017206760548826 1.066949030207176 1.0121699269883824 1.058948937825482 1.148238087527613 0.9292522679844246 0.9986342219110812 0.8572990821650736 1.0 15.898595453249902 LQPFHS(ph)TELEDDAIYSVHVPAGLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQPFHSTELEDDAIYSVHVPAGLYR 25 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 LQPFHS(0.995)T(0.005)ELEDDAIYSVHVPAGLYR;LQPFHS(0.944)T(0.056)ELEDDAIYSVHVPAGLYR;LQPFHS(0.984)T(0.016)ELEDDAIYSVHVPAGLYR;LQPFHS(0.932)T(0.068)ELEDDAIYSVHVPAGLYR 261.83 6.919399999999998e-45 757810000.0 109342.0 116171.0 105713.0 144380.0 158782.0 143689.0 106458.0 95678.0 143547.0 120219.0 True False 108753.31482103822 120037.68150814742 120596.47152613198 162658.49319638524 179001.94652535248 133756.11763752342 101308.219830947 102817.97820303966 108171.7652812527 112546.52049533596 0.9662965531266252 1.0665605740616557 1.0715255433519122 1.4452556372289267 1.5904707292374312 1.1884518246218585 0.9001452855678937 0.9135598128713409 0.961129360598362 1.0 16.78016192934776 2.2905178174056346 5.744472359660737 0.9326330456798146 1.2371189267890021 0.3761142594591008 0.17489926229498481 0.21866319856117447 15.61575326340977 0.06981555562473837 0.057257788556154515 195.21708223413873 -2.2905178174056346 0.3044858811091875 LQPFHST(ph)ELEDDAIYSVHVPAGLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQPFHSTELEDDAIYSVHVPAGLYR 25 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 LQPFHS(0.43)T(0.57)ELEDDAIYSVHVPAGLYR 130.25 0.00034157 107960000.0 26274.0 24708.0 27513.0 33623.0 38115.0 30525.0 39419.0 31458.0 45869.0 37955.0 True False 26132.543703315827 25530.39084369859 31386.59125271699 37879.66835255615 42968.71932469554 28414.878598120962 37512.15237479662 33805.55570048728 34565.19956311021 35532.67940508965 0.7354509747320839 0.718504522348001 0.8833161973206338 1.0660515611758319 1.2092732674288775 0.7996829699831434 1.0557085196739606 0.9513933727059442 0.9727721112458281 1.0 15.116858861314189 4.055164470167081 3.388474003027045 1.0045207252356834 0.727333794892226 0.5684479452162974 0.09752327708745168 0.16539410710848698 3.8751505879388586 0.025104270219389702 0.05955078438880509 11354.40733109301 -4.055164470167081 -0.2771869303434573 LQPQEIS(ph)PPPTANLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LQPQEISPPPTANLDR 16 0 E7ESA6;Q05397;Q05397-7;H0YBP1;Q05397-5;E9PEI4;H0YB16;H0YBZ1;Q05397-2;Q05397-6;B4DWJ1 E7ESA6 PTK2 Focal adhesion kinase 1 1 LQPQEIS(0.999)PPPT(0.001)ANLDR;LQPQEIS(1)PPPTANLDR;LQPQEIS(1)PPPTANLDR;LQPQEIS(1)PPPTANLDR;LQPQEIS(1)PPPTANLDR;LQPQEIS(1)PPPTANLDR 250.26 9.1505e-21 5322110000.0 644838.0 755865.0 677528.0 713512.0 654273.0 662869.0 657437.0 588733.0 703119.0 646628.0 True False 641366.2638562366 781023.5095949586 772918.0532210531 803842.5460419662 737590.7883701038 617046.426255785 625634.2606567683 632667.2459855983 529844.7437618974 605359.6474339165 1.0594797102432414 1.2901809905990114 1.2767915015435978 1.3278759980937067 1.2184340193415721 1.0193055134603175 1.0334918478771995 1.0451097106776726 0.8752561324625415 1.0 19.207432984443248 2.7499219764364744 3.9466837553829395 1.0021485940982526 1.2481226874509364 0.6934792367363823 0.07972236517575411 0.12757135515255272 4.628171104362113 0.025820700997933477 0.026072314146291308 562.2403063312719 -2.7499219764364744 0.24597409335268372 LQPSS(ph)SPENSLDPFPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQPSSSPENSLDPFPPR 17 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 1 LQPS(0.106)S(0.767)S(0.126)PENSLDPFPPR;LQPS(0.038)S(0.504)S(0.458)PENSLDPFPPR 174.95 1.3534e-09 837650000.0 554050.0 647760.0 581310.0 660550.0 587650.0 660900.0 642830.0 668290.0 740790.0 661770.0 True False 551067.0563607424 669320.3000208107 663153.395162902 744175.5622722829 662483.7442255635 615213.5385912567 611733.857050928 718161.1933078598 558232.2305774362 619535.2720301987 0.889484555988091 1.0803586659843722 1.0704045840517973 1.2011835255701289 1.0693236916997864 0.9930242334310042 0.9874076338644842 1.1591933917732673 0.9010499575724328 1.0 19.240826896164194 1.2226788067409537 24.985895868403382 0.9505249824312044 1.0620417961672226 0.19191175385682657 0.08617575164016102 429.81029764264986 676175.9535906436 0.08084917824177391 0.020480979595752916 16.69855174693041 -1.2226788067409537 0.11151681373601818 LQPSSS(ph)PENSLDPFPPR ddPTM_BT-474_Trastuzumab_2h_R1 5 LQPSSSPENSLDPFPPR 17 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 1 LQPS(0.032)S(0.421)S(0.547)PENSLDPFPPR;LQPS(0.056)S(0.402)S(0.543)PENSLDPFPPR;LQPS(0.043)S(0.24)S(0.716)PENSLDPFPPR;LQPSS(0.002)S(0.998)PENSLDPFPPR;LQPS(0.007)S(0.005)S(0.988)PENSLDPFPPR 293.35 2.4566999999999992e-33 1369470000.0 1091830.0 1204930.0 1047390.0 1131890.0 1167260.0 1194430.0 1208790.0 1178360.0 1386170.0 1266770.0 True False 1085951.7085937175 1245035.366654435 1194853.4079229184 1275187.1579447025 1315903.6421079384 1111861.8654857867 1150316.2096737702 1266295.2067908396 1044566.9772263723 1185923.6540636388 0.9157011961711352 1.0498444502630893 1.007529788134912 1.0752691824428975 1.109602323555075 0.9375492778779857 0.969974926912152 1.067771270479177 0.8808045725769115 1.0 20.177579706148176 2.7144006305636856 24.99765299258631 0.9829272682545652 1.033693589512368 0.16507663860087496 0.06519526400750837 1720.995804216917 1780663.2998460436 0.021303531638667536 0.020099373270635316 518.0845372921378 -2.7144006305636856 0.05076632125780278 LQPTWNDLGDKYNSMEDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQPTWNDLGDKYNSMEDAK 19 1 Q8NBS9 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ; 247.31 8.8811e-25 1521540000.0 903700.0 833660.0 754240.0 730450.0 702490.0 1001750.0 1031190.0 1005300.0 1529570.0 957170.0 False True 898834.5796105091 861407.8691418883 860430.4360283971 822924.8951052749 791947.9375155539 932501.3803658522 981307.4001716569 1080320.5908099643 1152627.9686879267 896082.5911255355 1.0030711326302153 0.9613041003953736 0.9602133157699703 0.9183583112262341 0.8837890004322235 1.0406422238318147 1.0951082075359524 1.2056038154396174 1.2862965758994984 1.0 19.773272184750844 2.246420781134707 2.1159402264103737 1.1807190162578622 0.9468705228726976 0.6134961609278378 0.07502621333396371 0.1846772955851886 1.6790131155292658 0.03369892087454331 0.022651227384095005 176.36840247432622 -2.246420781134707 -0.23384849338516467 LQQELDDLLVDLDHQR ddPTM_BT-474_Trastuzumab_2h_R1 16 LQQELDDLLVDLDHQR 16 0 P35579 P35579 MYH9 Myosin-9 0 ;;;;;;;;;;;;;;; 298.93 8.3057e-46 26997457000.0 2194313.0 2628505.0 2519698.0 2495079.0 2585447.0 2815947.0 2620306.0 2358135.0 3021672.0 2764169.0 False True 2182499.0626190933 2715993.1999601736 2874449.5767923733 2810955.7455737884 2914688.350305026 2621287.211916232 2493551.7882390157 2534111.0080668996 2277021.423930374 2587757.3678958584 0.843394009691764 1.0495548128488512 1.110787901699466 1.0862516634855206 1.1263375718547368 1.012957105034788 0.9635956674974352 0.9792691693222463 0.8799207577107014 1.0 21.303270923693532 2.3537353561413332 3.6179141975061504 0.9564463928670642 1.0512384046874246 0.2107606149976059 0.07882513018291343 0.3564180512242732 8.998314065132401 0.029729634395042268 0.024100975586467233 225.80593685421016 -2.3537353561413332 0.09479201182036034 LQQELDDLTVDLDHQR ddPTM_BT-474_Trastuzumab_2h_R1 5 LQQELDDLTVDLDHQR 16 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;;;; 326.09 2.7332e-59 1371340000.0 459296.0 588881.0 534416.0 568301.0 543655.0 591141.0 611767.0 523381.0 609646.0 591137.0 False True 456823.2013685831 608481.5480989184 609657.1275728571 640247.8483307852 612886.2417543578 550276.8140662347 582173.4930331112 562438.3478948667 459406.91213786864 553410.1305621526 0.8254695318001194 1.0995128467937954 1.1016370931872332 1.1569138564204147 1.1074720318758704 0.9943381656336232 1.0519747667823516 1.0163137912266682 0.8301382406411756 1.0 19.077989528175078 1.4271814365476965 5.340750311215146 0.9142493933093461 1.054692572421959 0.23435221165570297 0.09397388194065885 0.2577992641742679 13.297337250207883 0.06203219263309578 0.023367160183450916 26.741233521085945 -1.4271814365476965 0.14044317911261284 LQQELEFLEVQEEYIKDEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQQELEFLEVQEEYIKDEQK 20 1 P43686 P43686 PSMC4 26S protease regulatory subunit 6B 0 252.4 4.0711e-36 228350000.0 258760.0 221300.0 182620.0 192860.0 208070.0 241080.0 264320.0 232110.0 327410.0 244180.0 False True 257366.86491093846 228665.836721325 208331.30863850485 217276.0562256188 234566.48117248822 224414.70704127735 251533.83179954413 249431.22683069794 246724.19256922766 228596.22334698454 1.1258579041364265 1.0003045254786855 0.9113506145824652 0.9504796406711281 1.0261170448841646 0.9817078504426554 1.10034115225842 1.0911432532815213 1.0793012629728655 1.0 17.802442043327854 2.242661824576495 24.997580242613083 1.0778846981549597 0.9943502001992918 0.23843855046721307 0.058361262348331666 126.96279839186712 773863.7418829366 0.021173614724905275 0.017112025501273085 174.84846524115173 -2.242661824576495 -0.08353449795566792 LQQGAGLESPQGQPEPGAAS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR 200.52 1.5582e-24 2775000000.0 449610.0 510570.0 498070.0 589030.0 626670.0 532400.0 536370.0 601350.0 639800.0 565850.0 True False 447189.3497163673 527564.0138039178 568193.9266979521 663601.1376053927 706472.7099359032 495596.44113479415 510423.7339676213 646225.7905934271 482129.86288076756 529736.9685514416 0.8441724407854722 0.9958980496425128 1.0725963269123364 1.2526993149449261 1.3336292384270312 0.935551925873695 0.9635418410826943 1.2198993631887212 0.9101306714521832 1.0 19.014916667393006 4.565135647454985 2.237641972220384 1.1027937361408158 0.8255083039931757 0.22441318782286923 0.1360801555923741 0.6192730799492727 4.668430394155226 0.03544008966058605 0.292201959779556 36739.703529840284 -4.565135647454985 -0.2772854321476401 LQQHIQELEAHLEAEEGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQQHIQELEAHLEAEEGAR 19 0 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;M0QY43 Q7Z406 MYH14 Myosin-14 0 ; 136.14 3.7021e-06 217365000.0 72344.0 102737.0 90035.0 103274.0 97494.0 88719.0 85205.0 69567.0 99248.0 94795.0 False True 71954.50794217407 106156.53893917213 102711.14540175107 116348.47781107832 109909.28300778868 82586.06435206196 81083.30863529134 74758.44279406816 74789.66025506465 88745.10194191735 0.8107997666087247 1.1961960335416635 1.1573725552647889 1.311041119624011 1.2384828075325558 0.930598563130995 0.9136651698068862 0.8423951424721637 0.8427469079252804 1.0 16.437379875402208 2.6302637909435456 5.135441789549096 0.8877124437927602 1.155200330878147 0.45084202990487876 0.13017965796686756 0.19709207641779608 7.760429628629436 0.04334962686466736 0.0407380196095503 426.83870237433234 -2.6302637909435456 0.26748788708538696 LQQLFNHTMFILEQEEYQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQQLFNHTMFILEQEEYQR 19 0 P35579;P35579-2;A0A494C024;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749;P35749-2;P35749-4;P35749-3 P35579;P35580;P35749 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 0 ; 326.47 3.7784999999999987e-75 1583860000.0 597870.0 695740.0 663620.0 678790.0 675470.0 745210.0 676030.0 598730.0 833440.0 829700.0 False True 594651.1343496022 718897.2853162882 757051.9277115569 764724.7444020931 761487.1006756419 693695.3867356493 643327.8462146109 643410.2728893366 628049.8795238308 776747.8356580924 0.7655652285735557 0.9255220965079474 0.9746431119053607 0.9845212426683972 0.9803530382939258 0.8930766909030681 0.8282325571844784 0.8283386748599217 0.8085634110479644 1.0 19.567086790842264 2.463240589325773 5.860153542570898 0.8494865930508413 0.932610541663298 0.09971766210999078 0.07742034732206673 0.26595447181990317 32.474350340067225 0.026586879463168137 0.022830756048475887 290.56318630612 -2.463240589325773 0.08312394861245676 LQQLGEAHQAETEVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQQLGEAHQAETEVLR 16 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;F5H4J1 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 171.78 4.8014e-09 783580000.0 150052.0 189948.0 183628.0 182094.0 185590.0 205476.0 199798.0 172635.0 198168.0 199109.0 False True 149244.13670434448 196270.30435400916 209481.2262768118 205147.08172948172 209223.7864218877 191271.9277584765 190133.00743752014 185517.90032276735 149332.15171515467 186401.69315420868 0.8006586967044123 1.0529427122297448 1.1238161131053117 1.1005644758804047 1.1224350105489571 1.026127630719742 1.0200175986611053 0.9952586652165751 0.8011308759497873 1.0 17.508055439011013 1.4724065203268133 4.193647007716731 0.8977969290086756 1.0431946892743955 0.21913374072919234 0.09818012293299136 0.2617349204960308 9.284806103800442 0.06539321729607038 0.025150880287839454 29.67607912238948 -1.4724065203268133 0.14539776026571993 LQQLPADFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQQLPADFGR 10 0 Q96AG4 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 0 160.36 1.7219000000000002e-05 298470000.0 100980.0 156300.0 162410.0 130080.0 186180.0 191530.0 131360.0 131110.0 176350.0 146370.0 False True 100436.33489993268 161502.35101465476 185275.9163069735 146548.11466259696 209888.9194246837 178289.98191312392 125005.61495606895 140894.09396309004 132890.90546893305 137028.54128633844 0.7329592357701472 1.178603738305695 1.3520972679685472 1.0694714640241711 1.531716804793932 1.3011156671409387 0.9122596926347916 1.0282098359981373 0.9698045693359657 1.0 17.06411689378107 2.2354628724557597 24.999365456352862 0.9826768946757412 1.2104446322955946 0.2226535073764594 0.1969466405453774 122.56030869736544 989068.1407172022 0.07319372991704762 0.05637426272022662 171.9740315506578 -2.2354628724557597 0.22776773761985347 LQQLSVS(ph)ATHLADKVEEAVLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQQLSVSATHLADKVEEAVLDR 22 1 Q2KHM9-2;Q2KHM9 Q2KHM9-2 KIAA0753 Uncharacterized protein KIAA0753 1 LQQLS(0.025)VS(0.792)AT(0.183)HLADKVEEAVLDR 71.528 0.0098367 6297000.0 10462.0 5545.6 6181.6 5927.6 4901.7 8107.3 6019.2 6400.1 11287.0 6631.0 True False 10405.67375443747 5730.181943614006 7051.915548569602 6678.033552229477 5525.902440347895 7546.861433531399 5728.028300423036 6877.707961049293 8505.470088051294 6207.803902915283 1.676224622615866 0.9230610427180249 1.1359758875852877 1.075748148083957 0.8901541554418051 1.2157055138270836 0.9227141175856188 1.1079132119201465 1.3701254454988485 1.0 12.599867269899761 4.7472141888701405 24.923515803179118 1.0704597192603436 1.6762249432038547 0.6249689918729416 0.14058763188613782 668.6803010182863 1925850.4800768937 0.03162782450591397 0.37339655807266486 55874.56935215608 -4.7472141888701405 0.6057652239435112 LQQQAALS(ph)PTTAPAVSSVSK ddPTM_BT-474_Trastuzumab_2h_R1 3 LQQQAALSPTTAPAVSSVSK 20 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LQQQAALS(0.928)PT(0.064)T(0.009)APAVSSVSK;LQQQAALS(0.947)PT(0.05)T(0.003)APAVSSVSK;LQQQAALS(0.679)PT(0.308)T(0.013)APAVSSVSK 310.92 8.2182e-49 752770000.0 672360.0 725820.0 681490.0 684180.0 679170.0 867540.0 820980.0 748600.0 950750.0 883950.0 True False 668740.0884662189 749978.4799325453 777437.868382731 770797.1178494446 765658.2737440233 807569.001769495 781266.0609518385 804464.3333137761 716450.4018972947 827535.5542123297 0.8081104008911659 0.9062794657160015 0.939461591016131 0.9314368596321034 0.9252270429308589 0.975872272386122 0.9440876068406128 0.9721205683778585 0.8657638916544573 1.0 19.65846177159401 5.76160380182306 0.995157822458416 0.9474455652233379 1.238842860083354e-16 0.5954372637846513 0.033978027632246714 7.901357979891944 1.3252170774673007 0.009526391003668571 12.890472569025524 577568.9024227645 -5.76160380182306 -0.9474455652233378 LQQQQRPEDAEDGAEGGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 LQQQQRPEDAEDGAEGGGK 19 1 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;; 218.79 2.9939e-19 1852890000.0 718700.0 659960.0 614200.0 575170.0 596090.0 769050.0 775050.0 761940.0 966610.0 727510.0 False True 714830.599055076 681926.369645755 700674.0212778972 647986.4630264911 671998.528197763 715887.3836489732 737557.8705214771 818799.8318529234 728401.9174104071 681079.6889473535 1.049555008988576 1.0012431448362675 1.0287695150046654 0.9514106404024325 0.9866665224393552 1.0511066403336986 1.0829244837141065 1.2022085596450893 1.0694811917474631 1.0 19.377464083427633 2.342171900677475 2.681210841393233 1.1171674060911816 1.0029463069829911 0.3079818875601813 0.05461575292079783 0.23715614299807272 3.4835882212580382 0.021523985471402916 0.016681347094402544 219.8729992943062 -2.342171900677475 -0.11422109910819045 LQQQQRPEDAEDGAEGGGKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQQQQRPEDAEDGAEGGGKR 20 2 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 174.74 1.661e-12 285260000.0 122600.0 111970.0 103650.0 111570.0 114660.0 120500.0 124700.0 116700.0 138980.0 128360.0 False True 121939.93522214057 115696.8537627058 118243.01905804957 125694.75056047016 129261.27135693535 112170.11862648887 118667.78459973975 125408.7465905928 104730.2412365881 120167.95490547516 1.014745863970634 0.9627928997686084 0.983981288115124 1.0459922585796055 1.0756717251168422 0.9334445170072384 0.987516053619158 1.043612223318938 0.8715321927461406 1.0 16.874692699415693 -0.0827677071839997 7.7549069149860275 0.9999999694377977 0.9958348462190071 0.0 0.056723169711137146 0.0 0.0 0.05268714580643865 0.012418479365505984 0.8264798939607824 0.0827677071839997 -0.0041651232187905896 LQQVLQMESHIQSTSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LQQVLQMESHIQSTSDR 17 0 Q14974;Q14974-2;J3KTM9;J3QKQ5 Q14974 KPNB1 Importin subunit beta-1 0 ;;; 195.92 1.6465999999999994e-11 1761860000.0 718694.0 860635.0 747938.0 767978.0 825537.0 889072.0 835990.0 759285.0 978783.0 888247.0 False True 714824.6313584091 889280.7157101572 853241.1692063631 865203.9360574423 930664.243608846 827612.5452903721 795549.9699080697 815946.7022711075 737575.04467025 831558.315993483 0.8596205673253242 1.0694147344888396 1.0260749640714917 1.04046092669251 1.1191809710867466 0.9952549681396707 0.9566977500039872 0.9812260746815767 0.8869793380504544 1.0 19.66545791563366 2.4750944432118582 10.616848762417083 0.9598286881342551 1.0297239330126047 0.1728009662097948 0.06784561486631145 0.17386564039935493 477.3613722485725 0.022574307433093042 0.01944563877465955 298.603190136099 -2.4750944432118582 0.06989524487834953 LQQWYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQQWYR 6 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;K7ERC6;K7EPY4;K7EP41;A0A2R8YF08;K7ELR7;K7ENA0;K7ERK8;A0A0J9YXM3;A0A0J9YXH9;K7EIL4;A0A0J9YYI8 P06744 GPI Glucose-6-phosphate isomerase 0 ; 135.25 0.031826 4141900000.0 2369710.0 2586660.0 1955620.0 1695270.0 1120640.0 1953530.0 1536240.0 1341020.0 3223600.0 1885580.0 False True 2356951.7446595333 2672755.4144310136 2230954.2974462407 1909891.0081800502 1263346.8614463287 1818487.069214977 1461926.2021932977 1441093.721961582 2429186.974026948 1765240.6700737432 1.335201360707983 1.5141025582190777 1.2638244378048702 1.0819436921880257 0.7156796706896359 1.0301638184775164 0.8281738728194074 0.8163723770886041 1.3761222564204056 1.0 20.751433460951812 3.764886972729548 2.4894868657074127 0.9363421494635467 1.4174459669328674 0.522574076216271 0.17575047556590795 0.20312570129730784 2.4718839815557425 0.047399412744631414 0.09366120372202577 5819.517422634353 -3.764886972729548 0.48110381746932074 LQS(ph)PLEPHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQSPLEPHSK 10 0 O15211;O15211-2 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 LQS(1)PLEPHSK 119.87 0.00040934 471120000.0 260250.0 250560.0 221850.0 231410.0 259560.0 294610.0 259990.0 259560.0 357480.0 317330.0 True False 258848.84291649348 258899.7381332818 253084.5516452317 260706.48227299785 292613.4274673478 274244.3041373435 247413.2904417505 278929.68521897355 269383.8439865845 297077.7277201184 0.87131689374021 0.8714882132705528 0.8519135836519748 0.8775699352279062 0.9849726188259509 0.9231399009343216 0.8328234241607045 0.9389114672432044 0.9067789970454306 1.0 18.18048092305613 -4.999999998316558 0.10751127099987173 1.3280783547871116 0.8341979582494594 0.41328546401364286 0.040482597866687106 181.45686298474163 1.3055944121171534 13.213164708868298 0.566111789154235 1.0000000038762681e-05 4.999999998316558 -0.49388039653765214 LQSECHPDTCTQMTATEQWIFLCAAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQSECHPDTCTQMTATEQWIFLCAAHK 27 0 S4R3N1;Q9Y3A3-2;Q9Y3A3-3;Q9Y3A3 S4R3N1 HSPE1-MOB4;MOB4 MOB-like protein phocein 0 130.78 2.64e-05 131750000.0 92113.0 96698.0 94596.0 92060.0 90853.0 93493.0 96937.0 87031.0 118270.0 99857.0 False True 91617.07384271629 99916.53447482463 107914.29455682832 103714.78656087548 102422.59102207959 87030.04896884927 92247.78697469902 93525.69515446339 89123.94323680578 93484.04076812124 0.9800290305161734 1.0688084688450579 1.1543606124653942 1.1094384208116408 1.0956157883261552 0.9309615657791204 0.9867757770923848 1.0004455775124812 0.9533599799977592 1.0 16.512432474283564 2.751113001241953 24.821126724687065 0.9775503506592893 1.0865202548141515 0.5800238704738181 0.04553389056187344 522.1881903844567 1032575.8962499383 0.014585729253116152 0.01536843751321951 563.784330593031 -2.751113001241953 0.10896990415486218 LQSEPESIRK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQSEPESIRK 10 1 P09496-2;F8WF69;P09496-4;P09496-3;P09496 P09496-2 CLTA Clathrin light chain A 0 ; 120.55 0.00087305 742680000.0 1158620.0 1192450.0 1023710.0 1167380.0 1097090.0 1306600.0 1313860.0 1220110.0 1647640.0 1400270.0 False True 1152382.1186547838 1232139.9773987518 1167839.4697531674 1315170.1883058306 1236797.9085381152 1216277.8174055621 1250303.5723673946 1311160.8037930438 1241601.199244868 1310903.569768538 0.8790746666883028 0.9399165627539688 0.8908660382695952 1.0032547157820662 0.9434697845521106 0.9278163897443016 0.9537723454274799 1.000196226503946 0.9471338913693655 1.0 20.322130133958275 7.999999999999999 0.23148726627538985 0.9888384866720995 0.4317422996977676 0.4600652720889399 0.030315219605237784 44.97978784246171 0.5914708869198608 0.04261841677065505 9.520962062677459 99999999.99999979 -7.999999999999999 -0.5570961869743318 LQSFDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 LQSFDSPER 9 0 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 LQSFDS(1)PER;LQS(0.007)FDS(0.993)PER 117.21 0.0012471 1120210000.0 787330.0 967380.0 891330.0 925260.0 843940.0 984270.0 1034900.0 943500.0 1147980.0 1191860.0 True False 783091.1027605869 999578.6585064402 1016821.5164207539 1042397.8211309551 951410.7565757193 916229.7316223584 984837.9332980798 1013908.7609959221 865075.7111438927 1115794.4743973168 0.7018237863057749 0.8958447827467069 0.9112982182224715 0.9342202753728405 0.8526756301509851 0.8211456075880365 0.8826338146458633 0.908687741569587 0.7753002286654567 1.0 20.089639881370992 -2.4319514212194404 2.321550235536641 2.3808926209930443 0.8628262476054215 0.2849217953047971 0.06815819092797878 3711141.42673895 603518.5484415524 27656025.23725199 0.015972911655253833 0.003698695498818327 2.4319514212194404 -1.5180663733876227 LQSIGTENTEENRR ddPTM_BT-474_Trastuzumab_2h_R1 10 LQSIGTENTEENRR 14 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;;;;;;; 283.1 3.1780000000000004e-33 147586710000.0 11490800.0 12504410.0 11960820.0 11809360.0 11265341.0 13786300.0 14328810.0 10759040.0 13490080.0 13337270.0 False True 11428934.809547897 12920611.72777452 13644799.490688868 13304423.765159056 12699915.401442608 12833285.530459438 13635670.718930194 11561934.198098104 10165630.541810837 12486074.009988677 0.9153345399366459 1.0348017893725616 1.0928014265951993 1.0655409982766169 1.017126391472841 1.0278079018427246 1.0920703103330844 0.9259863579896072 0.814157479258771 1.0 23.57381658657839 1.6044782641168833 5.6136323563156125 0.896062311878174 1.0371160952880578 0.4364150234818587 0.06317924591568876 0.1132883626820893 7.595963601583969 0.033391329281007485 0.015704334130808247 40.22335242216937 -1.6044782641168833 0.14105378340988384 LQSNPSLEGVSHVIVDEVHER ddPTM_BT-474_Trastuzumab_2h_R1 1 LQSNPSLEGVSHVIVDEVHER 21 0 H7BXY3;Q7L2E3-3;Q7L2E3;Q7L2E3-2 H7BXY3 DHX30 Putative ATP-dependent RNA helicase DHX30 0 181.82 2.8286e-17 78379000.0 32753.0 29908.0 33016.0 34524.0 38714.0 41351.0 35854.0 24312.0 38809.0 31346.0 False True 32576.661487200377 30903.469700232206 37664.365819783525 38894.73486017453 43643.99842414434 38492.502699783756 34119.60504441911 26126.284893834545 29245.04196395702 29345.471443339233 1.1101086431717406 1.0530916076744987 1.2834813675597805 1.325408417284186 1.487248160535194 1.3117016291289025 1.1626872347339134 0.8903003976023915 0.9965776839000142 1.0 14.840850265156725 1.921055310308798 4.181867037593157 0.9578867556422279 1.265228705993656 0.5730442809962368 0.11535018100922882 0.17972502953433778 5.563394193627831 0.061672412129948825 0.0357472352882067 83.37873662592573 -1.921055310308798 0.3073419503514281 LQSTFVFEEIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQSTFVFEEIGR 12 0 P51659-3;P51659;P51659-2;A0A2R8YD50;A0A2R8Y7L2;E7ET17;E7EPL9 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 ;; 125.97 0.00068814 190559000.0 136899.0 192424.0 160048.0 182074.0 168575.0 177125.0 194107.0 175520.0 211550.0 179748.0 False True 136161.95099490884 198828.71651723582 182581.36723784564 205124.54973153226 190042.02702769372 164880.76565740115 184717.30284925137 188618.19367250087 159416.33712476748 168276.32874999472 0.8091568909683211 1.181560817223629 1.0850092142734091 1.2189744764177872 1.1293449794120238 0.9798215047962076 1.0977022390575368 1.120883698103063 0.9473485564425976 1.0 17.360472723018926 -0.366552872457542 7.860103894936485 0.9999997582388379 1.0764689090570432 0.01505122489498767 0.11580716322110177 0.0 0.0 0.10501763392591168 0.0247528936977262 0.4299788833817662 0.366552872457542 0.07646915081820527 LQSVEYVVFDEADR ddPTM_BT-474_Trastuzumab_2h_R1 3 LQSVEYVVFDEADR 14 0 Q8TDD1-2;Q8TDD1;F8VRX4 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 0 ;; 110.92 0.0015854 69025000.0 53577.0 70838.0 59851.6 60821.0 72669.0 62605.0 62259.0 69513.3 65152.0 61281.0 False True 53288.54738496431 73195.80000752474 68278.18504056698 68520.93236388246 81922.96640709172 58277.26370631818 59247.29431752359 74700.7354273851 49096.162592072134 57369.99411469633 0.9288574664732886 1.2758551074833446 1.1901375639687632 1.1943688233067051 1.4279758551710522 1.015814357411437 1.0327226842497854 1.3020872074353096 0.8557812032177861 1.0 15.808008749540397 LQT(ph)RCGAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQTRCGAIR 9 1 D6RIA3 D6RIA3 LOC285556 1 LQT(1)RCGAIR 67.89699999999999 0.096354 618300000.0 62932.0 249730.0 251640.0 289210.0 257440.0 136680.0 147890.0 94463.0 33634.0 138680.0 True False 62593.18110440254 258042.11208502736 287068.72470591014 325823.95634663035 290223.45803357265 127231.63331011195 140735.99570533683 101512.30873339457 25345.351372509725 129829.32367007855 0.482118980019213 1.9875487662614828 2.2111239324900693 2.509633009986343 2.2354230140725884 0.9799914974018672 1.0840077705632531 0.7818904532796997 0.1952205453747658 1.0 16.986256746336718 2.631015375047447 4.635922925004238 0.7929495949864183 1.9411769816188778 0.4828451683369581 0.5577934965777851 0.20273303701196888 7.016733678966633 0.19100389376388086 0.1794378868272752 427.5780231526315 -2.631015375047447 1.1482273866324595 LQTATMET(ph)SRSPS(ph)PQFAPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LQTATMETSRSPSPQFAPQK 20 1 Q13796 Q13796 SHROOM2 Protein Shroom2 2 LQT(0.027)AT(0.049)MET(0.335)S(0.295)RS(0.295)PS(0.998)PQFAPQK 86.551 0.0057042 224670000.0 311180.0 357280.0 319160.0 297230.0 310300.0 376540.0 398820.0 347790.0 398340.0 372920.0 True False 309504.641455348 369171.84881967935 364094.9538115496 334859.28752432123 349814.8657078056 350510.67607981846 379527.5529596484 373743.8558418355 300174.4444825334 349119.92632712517 0.8865281472514471 1.0574356287923983 1.0428936487297285 0.9591526070916911 1.0019905463088041 1.0039835874374874 1.087097940677357 1.0705314353545026 0.8598032419417678 1.0 18.413363176766932 2.463363220882129 24.87840653454578 1.02270354661416 0.9954728719116219 0.0 0.07266692045335686 1028.4632842831243 1859738.2555050787 0.025128194773718044 0.021035328728426134 290.6452440997188 -2.463363220882129 -0.02723067470253815 LQTIYESDSCFSSDGVAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQTIYESDSCFSSDGVAGR 19 0 B5MCF1 B5MCF1 HDAC9 0 64.507 0.029921 372450000.0 98574.0 171290.0 138900.0 150530.0 154560.0 121380.0 138680.0 131980.0 85336.0 134080.0 False True 98043.288536601 176991.2841030084 158455.91265955693 169587.0825658114 174242.29985110712 112989.28629778596 131971.51859095338 141829.01778086042 64306.08624381551 125522.89960833687 0.7810789014794974 1.410031832082161 1.262366573382063 1.351044973426888 1.3881315711697793 0.9001487907811329 1.0513740441205375 1.1299055249950627 0.5123056147082862 1.0 16.937591058833238 2.729139344059258 24.45701088751513 0.9546125866858292 1.2556336089083648 0.3241840120488838 0.22726582850722354 634.7660801307791 1647807.3899947563 0.07175190881135765 0.0685052543533696 535.9685962852784 -2.729139344059258 0.3010210222225357 LQTMKEELDFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQTMKEELDFQK 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 212.17 2.1357e-08 5531400000.0 6294700.0 7154700.0 6094000.0 7010000.0 6520000.0 9379000.0 9320000.0 8638400.0 13170000.0 9389200.0 False True 6260810.034606909 7392839.864392519 6951982.2300024545 7897465.281248504 7350283.3529322995 8730651.805791205 8869155.994142534 9283041.272906402 9924429.968958583 8789973.217501454 0.7122672481118824 0.8410537417421086 0.7908991367755899 0.8984629515735152 0.8362122581098846 0.9932512409034266 1.0090083069290157 1.0560943751709293 1.1290625947754136 1.0 23.067427338898007 2.7990791143048193 0.7942371464097985 1.0765476560338947 0.7766186654070093 0.837266723731412 0.05022543029168226 0.22620282113084617 0.3106085915534413 0.03059443929944469 0.0313707044304744 629.6208688194282 -2.7990791143048193 -0.2999289906268854 LQTTDNLLPMS(ph)PEEFDEVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQTTDNLLPMSPEEFDEVSR 20 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta 1 LQTTDNLLPMS(1)PEEFDEVSR 77.221 0.0066287 25776000.0 42666.0 50805.0 44816.0 53501.0 47784.0 57393.0 49861.0 44632.0 53048.0 56843.0 True False 42436.290996638214 52496.013712728934 51125.70325234485 60274.221114418884 53869.0091620425 53425.556998589855 47449.032942482896 47962.666476703795 39975.03120678173 53215.231074259274 0.7974463351934041 0.9864847460583849 0.9607344029193712 1.1326498052843017 1.0122855444688554 1.0039523632630116 0.8916438392660566 0.9012958415941899 0.7511952950274426 1.0 15.699551607425734 2.1926713985644675 5.7735625405850275 0.8794930341260311 0.9897175530770481 0.1938960457059532 0.09513761203036004 0.2919332799090711 22.581355706370818 0.03595226985302194 0.026759841573635527 155.8372940605456 -2.1926713985644675 0.11022451895101704 LQVEEVHQLSR ddPTM_BT-474_Trastuzumab_2h_R1 5 LQVEEVHQLSR 11 0 Q9NR28-2;Q9NR28;Q9NR28-3 Q9NR28-2 DIABLO Diablo homolog, mitochondrial 0 ;;;; 232.78 8.336499999999998e-14 4955040000.0 2649410.0 3553050.0 3447180.0 3233940.0 3440480.0 4072200.0 3280070.0 2948740.0 3774660.0 3206000.0 False True 2635145.870937125 3671311.121385917 3932512.980574308 3643356.472416659 3878604.7346773795 3790698.3989277054 3121400.4830157855 3168789.9521983247 2844445.6208526404 3001390.3352053096 0.8779750637655293 1.223203486171945 1.310230440355338 1.2138895863298087 1.2922693490355577 1.2629808107476308 1.0399848518211032 1.055774024134573 0.947709329069345 1.0 21.51719952506316 2.1695488824631837 6.389131472217097 1.018351602904704 1.2080186428550665 0.37522228889844855 0.11694712559712497 0.22981943923364828 16.445486261509245 0.04473754298508369 0.03304703527556349 147.75727819582866 -2.1695488824631837 0.1896670399503626 LQVVDQPLPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQVVDQPLPVR 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 134.57 0.0003215 202267000.0 362090.0 392730.0 372480.0 411350.0 394980.0 415390.0 423840.0 383680.0 433100.0 404980.0 False True 360140.547671981 405801.7806397019 424921.9463458012 463426.86782333424 445278.36177012324 386675.067022882 403337.2399739669 412312.14988756325 326368.30824267014 379133.829679178 0.9499034891629979 1.0703391490627208 1.1207703272097056 1.2223305638947723 1.1744622265623634 1.0198907002049522 1.0638386986338564 1.0875108407932381 0.8608261323418227 1.0 18.532347666721872 1.2565112243975782 24.081695246541614 0.9304131676539351 1.0925611562954334 0.39559543834301103 0.07810559492280371 135.50997413413563 181795.85577549704 0.05450347581531562 0.019798282271558658 18.0514139064357 -1.2565112243975782 0.16214798864149826 LQVVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LQVVGR 6 0 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 ; 114.6 0.05850900000000001 204518000.0 199882.0 263440.0 254390.0 243920.0 247660.0 231490.0 234170.0 225560.0 255600.0 230580.0 False True 198805.85752097773 272208.44114715734 290205.9008024812 274800.2469903191 279198.033004174 215487.64116884602 222842.30248372917 242392.43257047198 192610.80486452678 215864.18699053032 0.9209765653702394 1.2610171466705535 1.344391141709913 1.2730237971450735 1.2933967273432998 0.9982556355135426 1.0323264159307026 1.1228932225849275 0.8922777212367162 1.0 17.719764386917845 2.732795122988662 24.89144214113578 1.0273878633664142 1.230936013861738 0.4258709452160835 0.1202180221674503 463.08694077618617 1999284.5663122039 0.03895642467994604 0.03763775002149718 540.4992840116149 -2.732795122988662 0.20354815049532382 LQVVLEHMPVGPDAILR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQVVLEHMPVGPDAILR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;H0Y710;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 132.51 2.3374e-05 559210000.0 202350.0 265630.0 258360.0 241320.0 240590.0 280050.0 252530.0 211030.0 298500.0 270570.0 False True 201260.5700831984 274471.3339732741 294734.84229462314 271871.0872569032 271227.71041134704 260690.80266679032 240314.1591417181 226778.13018862688 224938.67469507517 253301.9909533688 0.7945479201553103 1.0835735358424499 1.1635709659656084 1.0733081340326016 1.0707681743460051 1.0291699709331608 0.948725899221054 0.8952875946023464 0.8880256876326127 1.0 17.950498891113217 2.203711642180332 3.1025163072675612 0.9171330856814016 1.0488829952470005 0.217761136525774 0.0940318946754435 0.32992469915228545 6.539601463321937 0.038984026498610116 0.02796906249149197 159.84963251102877 -2.203711642180332 0.13174990956559884 LQWDGSSDLS(ph)PSDSGSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LQWDGSSDLSPSDSGSSK 18 0 K7EKG9;Q14CW9;K7EJK2;K7ENU1;Q14CW9-2 K7EKG9 ATXN7L3 Ataxin-7-like protein 3 1 LQWDGSSDLS(0.998)PS(0.001)DSGSSK;LQWDGSSDLS(0.763)PS(0.236)DS(0.001)GSSK 336.49 4.302599999999999e-75 399280000.0 625360.0 614280.0 548650.0 508650.0 519060.0 704900.0 650080.0 651720.0 818560.0 678420.0 True False 621993.1312440272 634725.9384598992 625895.1510487108 573045.0378469403 585159.2142903438 656171.922156117 618633.1468532371 700354.6557671041 616836.8561420464 635122.6547754159 0.9793275780155702 0.9993753705484542 0.985471304389279 0.9022588527401425 0.9213326117256209 1.0331420509447018 0.9740372858719555 1.1027077218883883 0.971209027900547 1.0 19.276675706240553 2.722085208947054 24.80156718489171 1.0256174209626734 0.9583557041219756 0.29338556206955724 0.04433038041978243 867.8893488610757 1306491.9046064974 0.014964486043030821 0.014149460094099895 527.3333145189133 -2.722085208947054 -0.06726171684069782 LQYAVSGLEPLAWSEDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LQYAVSGLEPLAWSEDHR 18 0 Q9UKN8;F2Z356 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 0 148.36 6.9916e-08 58440000.0 45323.0 65123.0 54771.0 70232.0 64752.0 58436.0 61466.0 57685.0 71859.0 63651.0 False True 45078.98600385867 67290.57968731514 62482.28072193373 79123.36399895085 72997.78338482713 54396.45686354779 58492.65475707775 61989.74761849474 54150.3123112677 59588.73868563727 0.7565017652357878 1.129249941709779 1.0485585380748106 1.3278241114712843 1.225026489819323 0.9128647134237634 0.9816058545165395 1.0402929980700562 0.9087339907786905 1.0 15.862752089809613 2.724306607857769 24.775839453967002 0.9779796655432657 1.1092841804095799 0.16555247206856305 0.14251792341982744 1355.280311639719 2355699.5168205574 0.04730348167640196 0.044806397503619026 530.0375133772574 -2.724306607857769 0.13130451486631423 LRAELDEVNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRAELDEVNK 10 1 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 161.19 6.5198e-06 653300000.0 962840.0 992620.0 901280.0 793720.0 890420.0 1157660.0 1038880.0 969090.0 1614340.0 1087070.0 False True 957656.17642158 1025658.7566485393 1028172.3899338054 894204.8706180556 1003809.7090671755 1077633.6890385146 988625.4054930027 1041408.4167393091 1216507.5380477298 1017692.2619125494 0.9410076230921285 1.0078279997147845 1.0102979342709757 0.8786593984094722 0.9863587909971091 1.0588993641489592 0.9714384617950015 1.0233038568871398 1.1953589346955893 1.0 19.956869942788998 1.4549564316576833 5.820411690166868 1.1025972654832157 0.9824731889463199 0.35782962214366887 0.06259554874289912 0.16670592485702215 12.437383914264903 0.03749700304279139 0.01522058181574427 28.507322682231354 -1.4549564316576833 -0.12012407653689583 LRAETEQGEQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRAETEQGEQQR 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 230.06 6.1303e-12 871080000.0 313250.0 414120.0 397930.0 468020.0 415000.0 385250.0 425430.0 386890.0 469470.0 417890.0 False True 311563.4968053471 427903.7338591734 453955.08513043565 527271.2840128278 467847.79010228626 358618.57428095286 404850.3255995773 415761.6963876125 353775.4090757019 391219.9024263709 0.7963896899748973 1.0937678047698673 1.1603578506997654 1.3477619127827023 1.1958690935728584 0.9166675111792051 1.034840822485435 1.0627314556571172 0.9042878618433371 1.0 18.577620240436204 2.7432358341813887 24.974533420720633 0.9980373794544684 1.1324625891927158 0.18975886146341914 0.13658269177499432 720.8551756566901 3850741.9993409887 0.04477671192454809 0.04612103795491945 553.6506755691439 -2.7432358341813887 0.13442520973824745 LRDDFEK ddPTM_BT-474_Trastuzumab_2h_R1 5 LRDDFEK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;;; 157.68 0.0013313 5347770000.0 3808460.0 3929900.0 3221640.0 3194820.0 3222730.0 3978460.0 3873010.0 3850830.0 5143280.0 3785560.0 False True 3787955.674519685 4060704.3458252824 3675218.9090031357 3599283.8844277225 3633125.562882747 3703438.424487482 3685657.709965015 4138198.4887185222 3875787.5604210612 3543962.3198190266 1.0688476153756392 1.145809119672763 1.0370366774076796 1.0156100882617514 1.0251591961249389 1.0449993793039534 1.0399821943234497 1.1676756453013983 1.0936311423928964 1.0 21.756931834250057 LRDDFEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LRDDFEKK 8 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 78.113 0.017698 633160000.0 720630.0 645160.0 537020.0 534030.0 572670.0 792500.0 775550.0 705950.0 1275800.0 793850.0 False True 716750.2081495204 666633.7605925436 612627.7481384828 601638.1432446704 645596.1300189795 737716.3403443366 738033.6836112918 758631.5737414651 961396.1848441437 743185.8133508213 0.9644293463002074 0.896994733506651 0.8243264835429408 0.8095393270924384 0.8686873705354565 0.9926405040190093 0.993067507954303 1.020783174427137 1.2936148236057838 1.0 19.503363436862756 2.0580524093885924 1.1899754126322568 1.1229820441485467 0.8709803644527246 0.5757183460714366 0.08535535726650162 0.33890116569676765 0.8932165264860942 0.06187788044277975 0.030083206180409553 114.30162623286517 -2.0580524093885924 -0.2520016796958221 LRDEELAELEDALR ddPTM_BT-474_Trastuzumab_2h_R1 4 LRDEELAELEDALR 14 1 Q15628-2;Q15628 Q15628-2 TRADD Tumor necrosis factor receptor type 1-associated DEATH domain protein 0 ;;; 220.25 4.2958e-12 412207000.0 449557.0 516503.0 508239.0 480839.0 554815.0 603700.0 530402.0 503752.0 586760.0 584910.0 False True 447136.6350624782 533694.4901223432 579794.6335074198 541713.168098466 625467.4016038548 561967.6399569401 504744.4289275955 541344.5322408245 442160.8601811804 547580.543033355 0.8165677921745323 0.9746410768467243 1.0588298669189613 0.9892849097552182 1.142238177673445 1.026273937426423 0.9217720303419359 0.9886117012887533 0.8074809556449979 1.0 19.062711659221097 -1.15569199562925 6.879666548050216 1.0000000323539115 0.9784043503213221 0.0013320441643598357 0.09718596655679872 4.99584902217867e-08 6.066765096444027e-09 0.09336466178734508 0.022006227720785136 0.06987277705156512 1.15569199562925 -0.021595682032589436 LRDEYR ddPTM_BT-474_Trastuzumab_2h_R1 3 LRDEYR 6 1 P18074;E7EVE9;A8MX75;K7EIT8;P18074-2 P18074 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit 0 ;; 143.02 0.010445 327064000.0 123966.0 139857.0 128176.0 126280.0 121687.0 138746.0 146580.0 105003.0 149198.0 126371.0 False True 123298.58082991725 144512.05569965814 146222.066674236 142267.03505221973 137183.11815464305 129154.81559295281 139489.36541002273 112838.85705443016 112430.1520507731 118305.89458834364 1.0422015002629086 1.221511879881398 1.2359660284301919 1.2025354742234198 1.159562831860445 1.0917022861993395 1.1790567654755408 0.9537889675494484 0.9503343213961085 1.0 16.852162432150944 1.7275817886483311 5.98328895070185 0.9646506951350962 1.1659188978421942 0.7084320395084347 0.05679084633080061 0.07635703796727059 7.045007170577587 0.029360055841940232 0.01512472559308239 53.404983921251116 -1.7275817886483311 0.201268202707098 LRDFLLDIEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRDFLLDIEDR 11 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 0 ; 183.79 4.7362e-06 167975000.0 133490.0 208392.0 197958.0 182958.0 142964.0 175103.0 190017.0 167140.0 240755.0 186956.0 False True 132771.3046721334 215328.20174437555 225828.76571821843 206120.46404089362 161169.61798598373 162998.5417581254 180825.1517745687 179612.83551972292 181424.15620171797 175024.30801891582 0.7585877994603133 1.2302759781293 1.2902708673689594 1.1776676415633482 0.9208413380418293 0.9312908795531947 1.0331430749323456 1.0262165155957148 1.03656548199071 1.0 17.417195777197108 3.246536552238584 24.99772019740434 0.9950326635162325 1.135068132546043 0.15300114467152326 0.13800234428293567 306.62215037349927 960992.1698788953 0.03874990922435955 0.05154735948628354 1764.1542376339805 -3.246536552238584 0.14003546902981046 LRDLEDSLAR ddPTM_BT-474_Trastuzumab_2h_R1 8 LRDLEDSLAR 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;; 217.14 6.7421999999999985e-09 12287850000.0 4168221.0 6618646.0 5902758.0 6856371.0 6131354.0 5707741.0 6622477.0 5450690.0 8054931.0 6620989.0 False True 4145779.761268889 6838943.631053995 6733815.0187077075 7724386.865600449 6912145.588517621 5313178.299247088 6302122.4871911025 5857448.165843002 6069901.185595562 6198431.813506131 0.6688433277971056 1.1033344944042482 1.0863739767266614 1.246184050741564 1.1151442488173116 0.85718105145077 1.0167285334105045 0.9449887232896327 0.97926400874 1.0 22.563471833042044 2.7569697997041533 24.853413460289055 0.9601139643978807 1.0608629316734892 0.07245279337694221 0.14471046771547225 1878.2764015803427 2535774.1317757927 0.04455875302539168 0.04718102104954112 571.4388981429378 -2.7569697997041533 0.10074896727560856 LRDPDSHIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRDPDSHIVK 10 1 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 KIAA1279 KIF1-binding protein 0 ; 66.262 0.039954 268040000.0 226562.0 260610.0 260270.0 232675.0 223810.0 282160.0 275610.0 226736.0 352360.0 282560.0 False True 225342.2153654046 269284.24630792835 296913.75369260565 262131.63114329474 252310.87687419925 262654.9433331962 262277.6913675564 243656.19166207896 265525.5993820991 264526.77888821304 0.8518691994530825 1.0179848234636606 1.1224336339047136 0.9909455377070521 0.9538197907018853 0.9929238334096684 0.9914976943729122 0.9211021760675737 1.0037758766733713 1.0 18.01305425278235 3.475888861508623 24.97978580766714 0.9715437138469086 1.0090189051168195 0.006205478170344003 0.06572803661059591 126.18230152744458 2557588.9068732867 0.01846247778708863 0.025217076262402795 2991.4989966023477 -3.475888861508623 0.037475191269910835 LREAIAELER ddPTM_BT-474_Trastuzumab_2h_R1 1 LREAIAELER 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 178.95 1.9696e-06 140080000.0 29048.0 50236.0 37668.0 39033.0 33832.0 39907.0 42746.0 36903.0 55112.0 45728.0 False True 28891.608795536198 51908.07489169674 42971.32698387467 43974.57379785633 38140.30466202542 37148.323020973374 40678.21267442237 39656.88924963703 41530.38606296474 42809.599890289544 0.6748862140636276 1.2125335210963042 1.0037778230583698 1.0272129127707879 0.8909287813894459 0.8677568376293021 0.9502124004585562 0.9263550547369718 0.9701185287738471 1.0 15.385646731342339 3.242698535769333 24.97872170838266 0.9284126309891608 0.9979673400381318 0.020278760115589822 0.12795971888562535 311.2975484398382 1879146.0007978228 0.03372851273260125 0.044079446929549154 1748.6324591946272 -3.242698535769333 0.06955470904897099 LRECLPLIIFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRECLPLIIFLR 12 1 P62701 P62701 RPS4X 40S ribosomal protein S4, X isoform 0 ; 172.76 3.1834e-05 571300000.0 387780.0 565480.0 557980.0 545530.0 519460.0 491650.0 551910.0 486570.0 740990.0 526010.0 False True 385692.235566408 584301.659960122 636538.7339508976 614594.042065549 585610.1519193582 457663.3927196127 525212.0047990567 522880.32415239664 558382.9432572994 492439.59146018256 0.7832275110592811 1.1865448475163214 1.292622983589585 1.248059767581144 1.189202009901166 0.9293797668919117 1.0665511342044967 1.0618161764815683 1.1339115557333266 1.0 18.909587231602572 2.773455197442345 24.899155554472348 1.0460745559860412 1.157011063520868 0.11108910296079189 0.1387177307396718 1259.8214246822251 898948.4004170717 0.04313049814536518 0.045745212552330224 593.5471137027961 -2.773455197442345 0.11093650753482676 LREDENAEPVGTTYQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LREDENAEPVGTTYQK 16 1 Q16643;Q16643-3;Q16643-2;D6R9W4 Q16643 DBN1 Drebrin 0 ;;; 236.75 8.8523e-20 4946130000.0 3509370.0 3638490.0 3336500.0 3113070.0 3185650.0 4064470.0 3917980.0 3677840.0 4875370.0 4135030.0 False True 3490475.9418476573 3759594.940136349 3806250.1986221145 3507184.3428097386 3591323.644673126 3783502.755633239 3728452.339262931 3952299.096493103 3673900.3901109826 3871128.8452227097 0.9016687590120361 0.9711882736158465 0.983240380469211 0.9059849162958995 0.9277199980323863 0.9773642022539218 0.9631434365363858 1.020968108920106 0.9490514361579251 1.0 21.884322895882416 2.4475986222045516 2.267145724107042 0.9892932727446548 0.941042001052259 0.33458017567151743 0.030276566257587834 0.35573154547390295 3.720846964129538 0.012198542790315396 0.009925260792656147 280.28420356407196 -2.4475986222045516 -0.04825127169239585 LREDGIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LREDGIQK 8 1 O00170;E9PMH2 O00170 AIP AH receptor-interacting protein 0 ; 138.4 0.0006449 1451950000.0 1799340.0 1782430.0 1640470.0 1518110.0 1519160.0 1930030.0 1984200.0 1768510.0 2562190.0 2092800.0 False True 1789652.553365468 1841757.1050483114 1871433.9167791468 1710302.570344676 1712616.0212332273 1796611.568901929 1888216.6656199165 1900485.196511815 1930772.606087016 1959235.7122637755 0.9134442283606782 0.9400385535644791 0.9551856905552323 0.8729437502793002 0.8741245428067487 0.9169961315303179 0.9637516577513785 0.97001355406896 0.985472342098199 1.0 20.90185954551933 2.142202437414679 2.731116075742457 0.9802740661395466 0.9113253776466215 0.6470282413165361 0.02480194103176314 0.20385488924260128 3.0453520829479297 0.012452672250484022 0.008211902783116943 138.74023871755276 -2.142202437414679 -0.06894868849292513 LREDLER ddPTM_BT-474_Trastuzumab_2h_R1 6 LREDLER 7 1 P62269;J3JS69 P62269 RPS18 40S ribosomal protein S18 0 ;;;;; 184.38 0.00057361 16247330000.0 6427930.0 7503460.0 6643800.0 6884800.0 6549770.0 7513980.0 6742510.0 6379090.0 8401930.0 7097160.0 False True 6393322.739090156 7753208.130162654 7579189.291055176 7756414.974085556 7383844.385971692 6994556.24860635 6416349.032410502 6855130.0881626755 6331386.931593941 6644213.172615624 0.9622392558746425 1.1669114052688427 1.1407203673556248 1.167394057441431 1.111319609130617 1.0527290541240728 0.9657048721518641 1.0317444534164486 0.9529174888140242 1.0 22.66366693072527 2.5350524415898983 2.978268569099878 0.9939448916851072 1.117817185792162 0.4894296350863502 0.058157832128888406 0.21918219822962642 3.8591011091223066 0.020412537094254616 0.01817021522782527 342.809178674958 -2.5350524415898983 0.12387229410705469 LREEEVDADAADAAAAEEEDGEFLGMK ddPTM_BT-474_Trastuzumab_2h_R1 3 LREEEVDADAADAAAAEEEDGEFLGMK 27 1 D6RGY8;D6RFI3;E7EQR8;Q9GZM5 D6RGY8 YIPF3 Protein YIPF3;Protein YIPF3, 36 kDa form III 0 ;; 205.32 2.8719e-25 650871000.0 523799.0 568978.0 506601.0 475098.0 516423.0 624217.0 584546.0 575196.0 710155.0 625975.0 False True 520978.9243835397 587916.0887755357 577926.017345171 535245.3580871049 582186.4079710674 581066.3480387634 556269.2767974288 618120.046306106 535146.815839468 586024.7395758404 0.8890050013257456 1.0032274221068964 0.9861802383351064 0.9133494235661634 0.9934502225835189 0.9915389382013704 0.9492249033719151 1.0547678358314632 0.9131812698330836 1.0 19.16060204507408 LREEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LREEGK 6 1 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 108.24 0.027892 209250000.0 373690.0 381300.0 305340.0 287420.0 296710.0 346770.0 374440.0 335140.0 549200.0 407200.0 False True 371678.09456086217 393991.3399992826 348329.2179371428 323807.34253016376 334494.2597620462 322798.60610877635 356326.90670029307 360149.84860643744 413857.0189029661 381212.1473785403 0.974990165231511 1.03352252206185 0.9137411290077674 0.8494150691599707 0.8774491108487589 0.8467689404142733 0.9347207562786911 0.9447491405587656 1.0856343947823093 1.0 18.54023456609694 1.3907362493772786 4.319384526700573 1.0414651735506382 0.917536121325805 0.42279578410445273 0.05683257474601746 0.22187153198399762 6.551677735441046 0.04566013499411339 0.01593782055610926 24.588738562269455 -1.3907362493772786 -0.12392905222483319 LREEIEELKR ddPTM_BT-474_Trastuzumab_2h_R1 7 LREEIEELKR 10 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;;;;; 205.56 9.3601e-08 8104960000.0 4917380.0 4944310.0 4277630.0 4157360.0 4171560.0 5391020.0 5298160.0 4638800.0 7184970.0 5227870.0 False True 4890905.37245228 5108878.369451484 4879883.122173516 4683681.349736276 4702783.439226736 5018351.476496053 5041867.759863323 4984970.8113491135 5414330.417165411 4894222.860795309 0.9993221623866776 1.0438589567254184 0.9970700683173502 0.9569816256743119 0.9608846129378212 1.025362272873813 1.0301671794005762 1.0185418508995028 1.106269692076422 1.0 22.222648366050795 2.535594797863952 7.6495923858398855 1.0364369855544926 0.9928147218751361 0.30460311155703934 0.03396206280380962 0.41031006333326286 48.39872426835624 0.01149949929783528 0.01077374538705885 343.2375535641996 -2.535594797863952 -0.04362226367935651 LREELGLCER ddPTM_BT-474_Trastuzumab_2h_R1 2 LREELGLCER 10 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 0 ; 134.49 0.00015438 461380000.0 142639.0 191695.0 191630.0 194758.0 160315.0 153553.0 159415.0 141844.0 185681.0 150233.0 False True 141871.04747268275 198075.45219292538 218609.83832218044 219414.3428310124 180730.1649885496 142938.24253488166 151703.48742556138 152429.11954923772 139922.40554792713 140645.0013190577 1.0087173105487321 1.4083362390077758 1.5543377743390754 1.5600578817107331 1.2850095154008172 1.0163051739792848 1.0786269401883481 1.083786257027702 0.9948622719303666 1.0 17.101698753002267 2.8765192407821703 3.9857876700791013 1.0477790855375568 1.3994662590509743 0.5626202528055968 0.14586695870665742 0.18100582382415767 4.954619329713054 0.047356873303738736 0.050848828680253304 752.5220688252933 -2.8765192407821703 0.3516871735134175 LREENK ddPTM_BT-474_Trastuzumab_2h_R1 2 LREENK 6 1 O95292;Q9HCK0;Q8NHV4-2;Q8NHV4;Q8NHV4-3 O95292;Q8NHV4-2 VAPB;ZBTB26;NEDD1 Vesicle-associated membrane protein-associated protein B/C;Zinc finger and BTB domain-containing protein 26;Protein NEDD1 0 ; 120.65 0.018236 1268540000.0 1182060.0 1315510.0 1456370.0 940950.0 1347650.0 1225050.0 1320200.0 1185790.0 1849430.0 1459900.0 False True 1175695.920299213 1359295.955107412 1661414.2370050312 1060074.1735222216 1519265.2393526393 1140365.176957512 1256336.8823462424 1274279.6711196147 1393662.7575923367 1366727.932116727 0.8602267449662404 0.9945622118091896 1.2156144598814975 0.775629259204812 1.111607660640746 0.8343761403861597 0.9192296819459043 0.9323579632605206 1.0197075254281913 1.0 20.38229465056294 3.7245691950333506 24.996203802950824 0.9397864744984692 1.0205772757239466 0.08908621051661914 0.11937372336674874 1890.3644690305432 3377208.125732329 0.03024231642855189 0.047096658186072206 5303.580865006691 -3.7245691950333506 0.08079080122547744 LREETER ddPTM_BT-474_Trastuzumab_2h_R1 4 LREETER 7 1 P50570-2;P50570-5;P50570;P50570-3;P50570-4;K7EMQ3 P50570-2 DNM2 Dynamin-2 0 ;;; 170.24 0.00089572 1714200000.0 1237242.0 1624233.0 1304609.0 1318998.0 1528740.0 1350573.0 1376408.0 1242374.0 1606648.0 1477072.0 False True 1230580.8265425083 1678294.6135354158 1488286.6073352906 1485983.0115600869 1723415.9774481195 1257211.0674168705 1309825.8866508284 1335086.2565273445 1210711.1283802118 1382804.0003750394 0.8899170281607186 1.2136894404993293 1.0762816761678753 1.0746157887575272 1.2463197799403969 0.9091751738322235 0.9472245425205466 0.965492040929334 0.8755478925804718 1.0 20.399165251679648 2.7095858753990263 24.96187125909224 0.940382531431473 1.1037254705855712 0.41969479926975706 0.09441863619251223 643.8669767148416 554693.7095599734 0.02868948299733941 0.027053407153899783 512.3725744514496 -2.7095858753990263 0.16334293915409825 LRENVFQEHQTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 LRENVFQEHQTLK 13 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;; 132.31 7.2288e-05 2606420000.0 1856980.0 2342370.0 2352200.0 2271460.0 2283940.0 2684930.0 2693330.0 2368510.0 3207060.0 2671590.0 False True 1846982.2260098741 2420334.3694574367 2683369.314311088 2559026.603101959 2574786.221027025 2499327.1087453836 2563043.3383802483 2545260.243250086 2416723.0354023012 2501086.8389367294 0.7384718504196638 0.9677130484947006 1.072881306053272 1.0231658346536505 1.0294669425079326 0.9992964137974139 1.0247718305814035 1.0176616835631889 0.9662691425899098 1.0 21.254123718777652 4.715861770646474 3.420402992718467 1.018006388880384 0.709641363391861 0.9104002033171813 0.026035063953542496 0.06942011301273979 1.400583974773545 0.006145651565205768 0.05395060562704045 51983.0516022727 -4.715861770646474 -0.30836502548852307 LREQLQLLEEQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LREQLQLLEEQHR 13 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 163.27 2.3449e-05 634030000.0 676310.0 935500.0 837740.0 872530.0 756340.0 785330.0 822140.0 693730.0 849620.0 761380.0 False True 672668.8221051052 966637.5519783079 955686.5102333849 982992.2085374842 852655.4158215984 731041.9855679722 782369.9473202075 745499.6552895625 640242.5353247223 712788.0765497861 0.9437150314875129 1.356135973341848 1.3407723019994051 1.379080600359657 1.1962256999988452 1.0256091671826824 1.0976192967582017 1.0458924325700214 0.8982228468576288 1.0 19.443113678234962 2.8375155091641844 3.5114883952785525 1.024564916359923 1.2700640808880248 0.46200403182240213 0.1241090331500731 0.22283822151641314 5.146589166727994 0.03954007604644647 0.04195045864916548 687.884477029863 -2.8375155091641844 0.24549916452810172 LRETFER ddPTM_BT-474_Trastuzumab_2h_R1 4 LRETFER 7 1 Q9Y2W2;F5H5G4 Q9Y2W2 WBP11 WW domain-binding protein 11 0 ;;; 137.84 0.0025933 498700000.0 306826.0 345693.0 302528.0 309865.0 302383.0 324105.0 303869.0 275552.0 373901.0 321470.0 False True 305174.08290757344 357199.18252916884 345121.3127794845 349093.87722882535 340889.6826855413 301700.3842111054 289169.6955776926 296115.08946470433 281758.10856671125 300953.5093756861 1.0140240050386609 1.186891567638343 1.146759555970696 1.159959483286984 1.1326988124933346 1.002481695053062 0.9608450693183858 0.9839230320954926 0.936218052918556 1.0 18.199181114333985 2.676978825976962 3.5882636315426137 0.9713262840596297 1.135130248782421 0.7377014787703751 0.045315543906415505 0.11419840114323616 2.946764719626771 0.014570061964609807 0.013960303865573037 475.3120515436484 -2.676978825976962 0.16380396472279135 LREVVETPLLHPER ddPTM_BT-474_Trastuzumab_2h_R1 2 LREVVETPLLHPER 14 1 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 ; 128.74 4.3252e-05 341210000.0 97905.0 137879.0 141955.0 145003.0 131638.0 127326.0 132270.0 116955.0 186550.0 141909.0 False True 97377.89035826804 142468.2191653845 161941.0301050211 163360.36493250733 148401.31902044517 118524.25331316442 125871.59477953137 125682.77598545633 140577.25214193057 132852.24612559256 0.7329788784015842 1.0723809594510088 1.218955906488245 1.2296394656216332 1.117040346311896 0.892150917803203 0.9474555263487078 0.9460342572352256 1.0581473497183866 1.0 17.019463094036855 2.7510927389038864 24.48961708280196 0.9620907260505572 1.0907757272015597 0.12657172809225314 0.13445729875956258 1082.9862468316605 2116312.365891052 0.042981230874142344 0.04529386895656102 563.7580274215768 -2.7510927389038864 0.12868500115100245 LREYEAALNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LREYEAALNSK 11 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 ; 204.85 2.9005e-08 2000720000.0 1465900.0 1619750.0 1447510.0 1408600.0 1524290.0 1884560.0 1773250.0 1655470.0 2540400.0 1983610.0 False True 1458007.7572768016 1673662.3995904466 1651306.8260175346 1586928.6155729871 1718399.2963253353 1754284.8029770616 1687471.123027173 1779009.5777063298 1914352.4596159752 1857014.3115460407 0.7851354446821416 0.9012652132966352 0.8892267634936825 0.8545591736726056 0.9253559790256529 0.9446802817133636 0.9087011944578306 0.9579945435235936 1.0308765245983473 1.0 20.82455350313113 7.4470973497610045 0.15612801878573038 1.0366641730668626 0.31607118854635974 0.7442282193042846 0.03380178619941024 28.156164838390144 0.332796067870345 0.1088746596493971 4.495019279925603 27996087.987187307 -7.4470973497610045 -0.7205929845205029 LRGDVAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRGDVAIK 8 1 A0A087X1E4;P53365;P53365-2;P53365-3 A0A087X1E4 ARFIP2 Arfaptin-2 0 ; 111.46 0.0029459 1130870000.0 1020100.0 1169230.0 998720.0 1061520.0 1158100.0 1435170.0 1340790.0 1239830.0 1737020.0 1401270.0 False True 1014607.8949437649 1208147.1137355384 1139331.094970142 1195908.3231599024 1305577.170403514 1335960.0759267902 1275930.8653848022 1332352.4103291747 1308954.695875508 1311839.7489123961 0.7734236561934821 0.9209563246861319 0.8684986835585098 0.911626838683148 0.9952261101143839 1.0183866413823728 0.9726270807411006 1.0156365603602002 0.9978007580275868 1.0 20.323160063998298 5.613156581193501 0.41543838785221177 1.0140514402245975 0.4126765436830395 0.8307468400879505 0.030895922434648625 4.221655606941745 0.3279804412024303 0.02228261703562613 1.4575920680577465 410352.02526268695 -5.613156581193501 -0.601374896541558 LRGTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 LRGTQEVAPPTPLTPT(0.199)S(0.199)HT(0.199)ANT(0.199)S(0.199)PRPVS(0.007)GMER 101.11 0.00074573 232930000.0 18759.0 42306.0 32571.0 35885.0 36094.0 37597.0 39734.0 28731.0 53711.0 47695.0 True False 18658.003628320836 43714.12963548294 37156.713687792886 40428.037320628064 40690.35695410099 34998.00788381828 37811.91462137977 30875.053113061844 40474.643740526575 44651.064266256115 0.417862461621573 0.9790165218641554 0.8321574031522718 0.905421583672766 0.9112964634272263 0.7838112810732514 0.8468312064390175 0.6914740694410473 0.9064653755882419 1.0 15.446406942205048 4.749048511172427 24.698334981583233 0.8529717766219965 0.41786217275696536 0.7013092484770187 0.08823522094639624 743.9702252472005 1751962.5802082971 0.0214451550877569 0.30336114494418986 56111.06492102008 -4.749048511172427 -0.43510960386503117 LRGTQEVAPPTPLTPTSHT(ph)ANTSPRPVSGMER ddPTM_BT-474_Trastuzumab_2h_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 LRGTQEVAPPTPLTPT(0.009)S(0.009)HT(0.326)ANT(0.326)S(0.326)PRPVS(0.002)GMER 84.035 0.00020826 180850000.0 13629.0 20367.0 22391.0 22306.0 24167.0 23150.0 19031.0 21596.0 31313.0 24771.0 True False 13555.62297832425 21044.903282888507 25543.458173939092 25129.937312914288 27244.52420096857 21549.694989238324 18110.39782452001 23207.603182265968 23596.330722703126 23190.09357247992 0.5845436947443343 0.907495401737527 1.1014814620779259 1.0836496728385958 1.1748345954627848 0.9292629597153379 0.7809540641962708 1.0007550469656934 1.017517702071944 1.0 14.501221020847742 4.694557801550884 3.2551503045068184 1.0043396469445893 0.5452141902462561 0.616516967059888 0.10075453535242572 0.20879511952649324 3.633499590891797 0.02714252894022542 0.22633420051673162 49494.59803769358 -4.694557801550884 -0.45912545669833327 LRIEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 LRIEEEIR 8 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 200.86 0.00010619 1044920000.0 1062260.0 1420020.0 1182370.0 1246040.0 1072770.0 1195820.0 1250280.0 1060780.0 1518010.0 1246930.0 False True 1056540.9101881813 1467284.507279782 1348837.418655726 1403788.5362406392 1209380.900694047 1113155.778057493 1189799.1798665796 1139940.7901316972 1143916.7757918627 1167349.8598495182 0.9050764869448641 1.2569363802116087 1.1554697225299733 1.2025431145565906 1.0360055218149828 0.9535751160333277 1.0192310127316546 0.976520261268242 0.9799262544472519 1.0 20.154805577178173 3.060993656995912 5.589344913970149 0.9871538499285544 1.1401327415937061 0.3774375141703419 0.08695307198170589 0.18865280753095923 11.738019560450027 0.024152368321036937 0.02887857504005036 1150.7835812745948 -3.060993656995912 0.15297889166515177 LRLDTGS(ph)PEPETR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLDTGSPEPETR 13 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 LRLDT(0.367)GS(0.629)PEPET(0.004)R 85.006 0.0098595 0.0 130200.0 171310.0 128050.0 161800.0 158800.0 148720.0 170960.0 118560.0 176190.0 147710.0 True False 129499.01766657988 177011.94979091795 146078.32696944743 182283.8634102723 179022.2387186582 138439.33644922345 162690.01166937858 127407.54923548127 132770.33532504278 138283.02133910678 0.9364780752729853 1.2800700192747274 1.0563721095681333 1.318194103983769 1.2946075156952783 1.001130399875581 1.1765002680294305 0.9213535255571546 0.9601347586950286 1.0 17.077264504868936 1.745719559283586 7.9957919696980815 0.9578179775192384 1.159320499573093 0.3418935150339636 0.12123833272105249 0.12831982678987958 28.724047299633277 0.056725907125495904 0.030378515355225257 55.682606872138294 -1.745719559283586 0.20150252205385466 LRLEEALSEAAPDPSLPPLAQS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLEEALSEAAPDPSLPPLAQSPPK 25 1 A0A1B0GW72;Q96PX9 A0A1B0GW72 PLEKHG4B Pleckstrin homology domain-containing family G member 4B 1 LRLEEALSEAAPDPS(0.071)LPPLAQS(0.929)PPK 59.598 0.047867 71523000.0 57782.0 43621.0 32915.0 35155.0 35901.0 53773.0 51783.0 55561.0 64466.0 55678.0 True False 57470.90813218374 45072.89861554866 37549.14589769125 39605.61939547663 40472.77954810163 50055.79907802646 49278.05845972987 59707.24395304133 48579.218100143065 52124.582371666 1.1025682224635702 0.8647148152509608 0.7203730790580357 0.7598261241322778 0.7764624234208141 0.9603107938805454 0.9453899910096268 1.1454718913104833 0.9319828742944494 1.0 15.669676299109339 2.3831769070552236 2.2750335828074375 1.0351923416940834 0.8361168058261874 0.30375795909048653 0.11261242501114006 0.32917169187597284 3.490184929795005 0.048285249252927515 0.03737871757919677 241.64449572562202 -2.3831769070552236 -0.19907553586789595 LRLEEALSEAAPDPSLPPLAQS(ph)PPKHER ddPTM_BT-474_Trastuzumab_2h_R1 2 LRLEEALSEAAPDPSLPPLAQSPPKHER 28 2 A0A1B0GW72;Q96PX9 A0A1B0GW72 PLEKHG4B Pleckstrin homology domain-containing family G member 4B 1 LRLEEALSEAAPDPS(0.002)LPPLAQS(0.998)PPKHER;LRLEEALSEAAPDPSLPPLAQS(1)PPKHER 91.354 0.0014917 716300000.0 486500.0 421830.0 461150.0 441920.0 395260.0 536210.0 552480.0 477220.0 765030.0 579170.0 True False 483880.7380552316 435870.3565483801 526075.9116123444 497867.0266889217 445594.0181104333 499143.06480256945 525754.4317214445 512832.5796740589 576498.6073767946 542206.874747616 0.8924282604872286 0.8038820178207203 0.970249430823281 0.9182233753872386 0.8218155078130398 0.9205767909802108 0.969656520799686 0.9458245617279749 1.0632447396487559 1.0 19.0484838799426 1.8676046672325948 1.1454266388507943 1.0214193928720625 0.8836368987050175 0.5366813399263294 0.05063715436652477 0.3858674824327139 0.9342192516881597 0.04092504350589682 0.017385581114130272 73.72328308819739 -1.8676046672325948 -0.13778249416704502 LRLEGPGDEDADGAGS(ph)PSDWASPLEDPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLEGPGDEDADGAGSPSDWASPLEDPLR 29 1 O60347 O60347 TBC1D12 TBC1 domain family member 12 1 LRLEGPGDEDADGAGS(0.994)PS(0.006)DWASPLEDPLR 163.4 3.3865e-12 44446000.0 23663.0 30818.0 29327.0 28210.0 25852.0 36753.0 34054.0 30737.0 35810.0 31730.0 True False 23535.601037206445 31843.758500125594 33455.98668514635 31781.383107563517 29144.098963191092 34212.35161725601 32406.677921086874 33030.751019323456 26985.10532941587 29704.9642345803 0.7923120476209177 1.072001240218814 1.1262759456952784 1.0699014096292365 0.9811188033434395 1.1517385224597763 1.0909515886021988 1.111960639254752 0.9084375633754114 1.0 14.858416431051523 4.739184264383474 24.65283258126253 1.0671329691037204 0.7923119563134352 0.5521660692217177 0.07096034617256271 29.198368403842064 1153899.381435539 0.016201078741145094 0.09609990484627182 54850.96396529583 -4.739184264383474 -0.27482101279028515 LRLEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 LRLEQER 7 1 Q99583 Q99583 MNT Max-binding protein MNT 0 ; 147.29 0.0019713 389760000.0 333480.0 419950.0 341420.0 355430.0 318090.0 384280.0 415850.0 350400.0 537780.0 414440.0 False True 331684.5807331107 433927.7818848645 389488.96832416096 400427.4015569407 358596.8760328582 357715.6280978187 395733.7467987312 376548.6272951469 405251.3248828059 387990.0843800648 0.8548790138878943 1.1183991533654771 1.0038632016756075 1.0320557603855995 0.9242423723426556 0.9219710567330116 1.0199584028829998 0.9705109549302036 1.0444888701996633 1.0 18.56566025726545 1.2458162816493756 24.972715570293104 1.0222444374219928 0.9851211039817185 0.052065206804188136 0.06884115321685548 522.0050179416681 1796692.945205308 0.04616795521753402 0.016070460859658 17.612308403642743 -1.2458162816493756 -0.0371233334402743 LRLPLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLPLDK 7 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 91.069 0.015208 276990000.0 372940.0 374080.0 262430.0 313590.0 329160.0 432570.0 317140.0 330740.0 429810.0 373250.0 False True 370932.1324775297 386531.0266638644 299377.8629175491 353290.4618468933 371076.5749158279 402667.45406025153 301798.7266075498 355421.49826369 323889.08465892845 349428.86544459756 1.0615383248478123 1.1061794399041982 0.8567634002893098 1.011051166014526 1.0619516920666723 1.152358874381816 0.8636914589856642 1.0171497933104858 0.9269099284251362 1.0 18.41463926504315 2.2279344756179604 24.99956789150958 0.9569981654437298 1.035703392758429 0.21928380906375045 0.08224226685141067 390.8463263733194 919517.6075609013 0.031314706186977286 0.02336829520573144 169.0185904820249 -2.2279344756179604 0.07870522731469909 LRLS(ph)PS(ph)PTSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 LRLS(0.973)PS(0.648)PT(0.209)S(0.169)QR 62.75899999999999 0.044917 8951500000.0 457310.0 509880.0 466380.0 485440.0 409530.0 477030.0 477800.0 393980.0 472190.0 483920.0 True False 454847.89377191756 526851.0475710313 532042.25015237 546896.6542267157 461681.2180255159 444054.0389078343 454686.9886267495 423380.78818990284 355825.101521834 453035.81129524356 1.0039998658637894 1.1629346608709532 1.1743933633662305 1.207181950281416 1.019083274466879 0.9801742551836464 1.0036446949453846 0.934541547564295 0.7854237847213863 1.0 18.7892655704832 2.7037715387522967 1.3101009790380511 0.91980254186324 1.1394049249791058 0.5824707841279511 0.07744141779076931 0.3050979991342352 1.0704238549081904 0.036056183743718245 0.0329568630629615 505.55864217569433 -2.7037715387522967 0.21960238311586588 LRLS(ph)PSPT(ph)SQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 LRLS(0.94)PS(0.084)PT(0.535)S(0.441)QR 77.222 0.076093 7943300000.0 662800.0 707230.0 674110.0 757100.0 656060.0 690680.0 762620.0 622000.0 742750.0 709320.0 True False 659231.5584440031 730769.7230204372 769018.8285308414 852948.7823727883 739605.3522277246 642934.9172858365 725729.1571086885 668416.7984520025 559709.2148400907 664050.5903205959 0.9927429747871074 1.1004729664762891 1.1580726525061413 1.2844635556471602 1.1137786232079874 0.9682017103176357 1.0928823310861224 1.00657511369623 0.8428713459465033 1.0 19.340933631105933 2.813581457678922 5.34423870047533 0.9938630220384507 1.1402259778654211 0.4074461796500993 0.08844163233544823 0.2460431764985578 12.74003753333573 0.028683982531992103 0.030366313340837985 651.0007031893402 -2.813581457678922 0.14636295582697045 LRLS(ph)PSPTSQR ddPTM_BT-474_Trastuzumab_2h_R1 5 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 LRLS(0.999)PS(0.001)PTSQR;LRLS(0.843)PS(0.156)PT(0.001)SQR;LRLS(0.839)PS(0.16)PTSQR;LRLS(0.991)PS(0.009)PTSQR;LRLS(0.97)PS(0.03)PTSQR 122.2 0.0002397 29545659000.0 1322742.8 1867916.5 1523255.7 1630701.7 1451904.3 1401802.4 1414181.2 1071293.9 1733944.3 1221167.8 True False 1315621.2997353396 1930088.9715231324 1737716.8621841073 1837148.3680203855 1636795.7064939917 1304899.0995759077 1345771.8526591917 1151239.290738197 1306636.96092824 1143231.8255096464 1.1507913534062462 1.6882743538588154 1.520003925196399 1.6069779785927452 1.4317268553683915 1.1414125030976905 1.1771644408685473 1.0070042357550542 1.142932633410331 1.0 20.12468655345438 2.7343908334514153 2.593552795322825 1.081632141740244 1.5107586970411435 0.6574990499581642 0.1399652000559979 0.1623562984452794 2.1698083029159214 0.04613795557304918 0.04586198999376015 542.4888713289184 -2.7343908334514153 0.4291265553008996 LRLSPS(ph)PT(ph)SQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 LRLS(0.357)PS(0.67)PT(0.71)S(0.263)QR 121.45 0.010317 5551000000.0 1996700.0 2288200.0 2182400.0 2273200.0 2121200.0 2100400.0 2013800.0 1923100.0 2411300.0 2167800.0 True False 1985949.9890542252 2364361.35375389 2489662.950239143 2560986.8869235497 2391322.246662575 1955204.2918097689 1916384.800536935 2066611.487303933 1817067.4247646036 2029449.1480530456 0.9785660266281856 1.1650261628985101 1.2267678412280514 1.261912322060612 1.1783109958466773 0.9634162519841881 0.9442881593635499 1.018311539999186 0.8953500640840444 1.0 20.952656760174847 2.7381812643218137 24.592960147673452 0.9681282778730841 1.1714142495213422 0.6268311535077697 0.07612760480943775 18.25594620082549 1183469.5139822229 0.024751403087382738 0.02469888875827893 547.2443221684331 -2.7381812643218137 0.20328597164825812 LRLSPS(ph)PTS(ph)QR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 LRLS(0.104)PS(0.955)PT(0.018)S(0.923)QR 164.6 0.00026996 4648300000.0 1354100.0 1556300.0 1358000.0 1352800.0 1413700.0 1511300.0 1515300.0 1255700.0 1557200.0 1354100.0 True False 1346809.6760546532 1608100.5046967843 1549194.5960523984 1524064.3412942921 1593726.3153436203 1406827.388217534 1441999.1499918646 1349406.7103154012 1173448.9254109578 1267680.1786966645 1.0624207104345071 1.2685380206465915 1.222070536470142 1.2022467235081509 1.2571990491972291 1.109765232476799 1.1375102129264354 1.0644693614305478 0.9256663826813255 1.0 20.273759385143002 1.7345416419618709 1.231904875051914 0.9627755868481119 1.20132546076577 0.6692935445370672 0.06214946521577065 0.2446149555983502 0.6981160502392112 0.04952684659174175 0.01925084511127789 54.26772829902502 -1.7345416419618709 0.23854987391765803 LRLSPS(ph)PTSQR ddPTM_BT-474_Trastuzumab_2h_R1 4 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 LRLS(0.187)PS(0.812)PT(0.001)SQR;LRLS(0.277)PS(0.712)PT(0.006)S(0.006)QR;LRLS(0.037)PS(0.961)PT(0.001)S(0.001)QR;LRLS(0.204)PS(0.795)PTSQR 194.86 8.5749e-07 17909400000.0 3404120.0 3971190.0 3643010.0 3748830.0 3454060.0 3546290.0 3693990.0 3263730.0 4001550.0 3511110.0 True False 3385792.5961532854 4103368.658514953 4155914.142389433 4223431.493623802 3893914.0671824194 3301143.3193687256 3515297.591287828 3507286.105485136 3015421.6205228725 3287027.9537874935 1.0300467911299598 1.2483522246249312 1.264337937132771 1.2848784838465805 1.1846306517398608 1.0042942639307244 1.0694456027480113 1.0670082989236065 0.9173702392911928 1.0 21.64835229486899 2.802732563977612 4.778868908620646 1.0246258139644155 1.21565826311198 0.6021748961787078 0.07706609744345863 0.15596082957900526 7.175759553201905 0.02430136522420424 0.02558631730080745 634.9398191846092 -2.802732563977612 0.19103244914756456 LRLSPSPTS(ph)QR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 LRLS(0.104)PS(0.295)PT(0.162)S(0.439)QR 85.081 0.040729 1591900000.0 332000.0 391930.0 367000.0 386490.0 336990.0 378420.0 351640.0 309020.0 403070.0 346360.0 True False 330212.5488886678 404975.1531233119 418670.4099788146 435419.59437228733 379903.67900378146 352260.7161048625 334629.82980475127 332080.6415717649 303738.7993612861 324255.0082662855 1.0183730103483546 1.2489403179572083 1.2911763868115584 1.3428307451606452 1.1716200808586925 1.086369391758409 1.0319958713789417 1.0241341940940902 0.936728166467822 1.0 18.30676933216786 2.5848557407003767 1.8637693693187736 0.999992240246403 1.2323745298152584 0.6077948674332059 0.08270439203032638 0.23914564771439462 1.6622019940879937 0.03458435319327671 0.030261271344148286 384.4640536722857 -2.5848557407003767 0.23238228956885543 LRNELQTDKPFIPLVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LRNELQTDKPFIPLVEK 17 2 Q9H993 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 117.66 0.00011628 761080000.0 3339600.0 3382900.0 3267700.0 3035700.0 3231500.0 3833700.0 4033100.0 3792800.0 5781200.0 4004200.0 False True 3321619.964664445 3495497.781493767 3727763.756642433 3420019.3087426657 3643012.3703988865 3568685.342559094 3838003.5450618304 4075837.995448154 4356500.724111111 3748648.5278319065 0.8860846622464121 0.9324687965653176 0.9944287198347846 0.9123339473814823 0.9718202022278902 0.9519925157195527 1.0238365951266186 1.0872819804756364 1.1621523575139667 1.0 21.83793913463425 2.0416628797821463 2.0804427350781842 1.09368448175178 0.9414570978214395 0.6577539495207412 0.04614968772695256 0.18215123032517547 1.4915996290806397 0.02439976412270147 0.013326352123707199 110.06845736549111 -2.0416628797821463 -0.1522273839303404 LRNPSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LRNPSDR 7 1 Q9P0L0-2;Q9P0L0 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 ;;; 107.66 0.006773 621370000.0 440291.0 717710.0 693690.0 616250.0 624280.0 631420.0 568540.0 473055.0 574940.0 572014.0 False True 437920.5221769289 741598.5434851424 791355.5223384318 694267.1868144646 703778.3576025427 587771.4216028021 541037.5481662864 508356.7662246175 433253.7408012951 535507.5767941764 0.8177671823030894 1.384851635386249 1.477767181327093 1.2964656652865771 1.3142267039725595 1.0975968353641306 1.0103265978143863 0.949298923589284 0.809052494448304 1.0 19.030547461972667 2.366896814013767 1.7808346389058978 0.9216977200320522 1.280309155654796 0.4328365489804755 0.17022917465027618 0.3218544682272376 2.077922490828472 0.08024068729015715 0.057412834085219834 232.75381816612946 -2.366896814013767 0.3586114356227439 LRNPSDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRNPSDRK 8 2 Q9P0L0-2;Q9P0L0 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 ; 90.629 0.0073459000000000016 569480000.0 209740.0 267980.0 294400.0 225830.0 208050.0 254980.0 270420.0 202690.0 331530.0 291340.0 False True 208610.78314430456 276899.5523026693 335848.9610293277 254420.05484512827 234543.93429103753 237353.83275835813 257338.7514952815 217815.75703896492 249828.8737743995 272746.4317712773 0.7648524741076859 1.015227038918239 1.2313596876345854 0.9328080048302251 0.8599340155171085 0.870236252833551 0.9435091407944926 0.7986016741792731 0.9159748567633096 1.0 18.057200796926825 3.4873075533794275 24.51633714515491 0.8849797305206683 1.0178093548829565 0.13285807418879036 0.11641283228525529 591.7448955834229 1424207.7527323635 0.03164035752618157 0.045575715182098006 3071.196140764504 -3.4873075533794275 0.1328296243622883 LRPENVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRPENVR 7 1 A0A3B3ISG5;P14735 A0A3B3ISG5 IDE Insulin-degrading enzyme 0 91.064 0.015211 85399000.0 86391.0 97569.0 104040.0 90381.0 66875.0 72568.0 94549.0 69978.0 128970.0 95361.0 False True 85925.88045494244 100816.52518329398 118687.92766810862 101823.22533302734 75391.13485082026 67551.54496669755 89975.30365774487 75200.11370108393 97187.0716094602 89274.97933734031 0.9624855821053429 1.1292808570959398 1.3294646333058966 1.140557254550252 0.8444822436300138 0.7566682789300105 1.0078445755530032 0.8423425494944987 1.0886260890884414 1.0 16.445968274449616 3.250391474445292 23.93251700477989 0.9088264976961231 1.1531509013696113 0.4252658393615264 0.12260737587412353 115.28566078538272 233207.6493423729 0.0341351402157417 0.045812608272797165 1779.8830794966018 -3.250391474445292 0.24432440367348818 LRPGFMEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 LRPGFMEDR 9 1 Q5BKZ1 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 ;; 170.47 5.2607e-05 833100000.0 742980.0 920660.0 858540.0 808960.0 713590.0 754710.0 838990.0 702730.0 1040380.0 781640.0 False True 738979.878232839 951303.6115492774 979414.9694365445 911374.2530554628 804461.4567206991 702538.674096244 798404.8484469564 755171.2809906368 783992.289377762 731755.0660043283 1.0098732657471865 1.3000300998854315 1.3384464487339145 1.2454635374537635 1.0993589167935336 0.9600735365350904 1.0910820922724351 1.0320000722566505 1.071386213502654 1.0 19.48100130300937 3.1216486593267647 4.01172507313524 1.0371375420854614 1.2370533956640666 0.5109456205538951 0.08820121745973966 0.17466696497464407 5.169739321709694 0.025974321449529623 0.03168058384252181 1323.2705870091484 -3.1216486593267647 0.1999158535786052 LRPISDDSES(ph)IEESDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRPISDDSESIEESDTR 17 1 Q09GN1;Q71F23-3;Q71F23;D6R9S4 Q09GN1 MLF1IP;CENPU Centromere protein U 1 LRPISDDS(0.001)ES(0.999)IEESDTR 126.51 0.00028313 0.0 68209.0 74084.0 71435.0 75010.0 72100.0 80189.0 71773.0 80785.0 98059.0 78569.0 True False 67841.7703227324 76549.84115527637 81492.42707584919 84506.2583090514 81281.5076298188 74645.72317460182 68301.06579051421 86813.58691791802 73893.67337328104 73554.65915369485 0.9223313805448382 1.040720493250101 1.1079165890167217 1.1488906247593755 1.105049069155204 1.014833377429255 0.928575654844609 1.1802595228742505 1.0046090108157228 1.0 16.166529108181685 4.706120953925398 3.5260855035057967 1.0696283991821747 0.909605897590479 0.236644785527529 0.0730149189887017 0.3524545787978983 7.760839662281525 0.017863535005968864 0.1421165971903183 50830.09880825807 -4.706120953925398 -0.16002250159169562 LRPKS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRPKSPPPK 9 2 Q9HCE5 Q9HCE5 METTL14 N6-adenosine-methyltransferase subunit METTL14 1 LRPKS(1)PPPK;LRPKS(1)PPPK 69.979 0.028024 3786000000.0 4476800.0 4051400.0 3724100.0 3774900.0 3456900.0 4976000.0 5024200.0 4383300.0 7034000.0 4822400.0 True False 4452697.406219243 4186248.399876987 4248420.909542516 4252801.95295078 3897115.724348416 4632020.832244059 4781160.251692154 4710404.103946396 5300564.950771053 4514630.303335645 0.9862817345042311 0.9272627255401107 0.9410340657137662 0.9420044759387247 0.8632192366823531 1.0260022462573912 1.05903693778859 1.0433643039311775 1.1740861586949254 1.0 22.10617642161907 2.536281232695052 5.1557443805695415 1.0666333216161523 0.9328646664894712 0.6347590523591512 0.04955465625971354 0.13416006797794242 7.403705431849972 0.01598893906907774 0.014754904365055324 343.780495093122 -2.536281232695052 -0.13376865512668112 LRPLFEACGEVVQIRPIFSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRPLFEACGEVVQIRPIFSNR 21 2 A0A499FI31;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 ; 249.34 6.6101e-31 1541230000.0 310210.0 335980.0 344110.0 310480.0 363580.0 379780.0 359920.0 313820.0 373420.0 287060.0 False True 308539.8638275711 347162.8911958011 392557.69694226136 349786.73616576847 409879.75789250457 353526.7025059583 342509.29457207915 337238.84194567107 281395.6445716416 268739.58503556944 1.148099799985677 1.2918189597928114 1.4607364110140446 1.3015824822363697 1.5251930892066172 1.315499175378896 1.2745025803576566 1.2548908338197937 1.0470941396087854 1.0 18.035849318780997 1.3155279812094292 1.56363581995404 0.9900733891947335 1.3452005521615522 0.6101011650722896 0.09715552645476903 0.2371958036328801 1.0629258137965394 0.08967872114510071 0.027595684500722386 20.678926101197703 -1.3155279812094292 0.3551271629668187 LRPLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRPLWK 6 1 P56559;P40617;P56559-2;P36406-3;P36406-2;P36406 REV__E5RG38 ARL4C;ARL4A;TRIM23 ADP-ribosylation factor-like protein 4C;ADP-ribosylation factor-like protein 4A;E3 ubiquitin-protein ligase TRIM23 0 ; 120.76 0.018192 5115100000.0 4243000.0 4874500.0 4630900.0 4247000.0 3461200.0 4658400.0 4964100.0 4227500.0 6699800.0 4518500.0 False True 4220156.15944162 5036744.785802531 5282890.467495627 4784669.764545274 3901963.303860317 4336375.772694076 4723967.518296448 4542977.516810031 5048724.062720486 4230125.461517523 0.9976432608993289 1.1906844918958124 1.2488732345069578 1.1310940557372529 0.9224225946387224 1.025117531889571 1.1167440685321335 1.073958103167057 1.19351638826081 1.0 22.012269022273404 1.0230926961155289 0.010322120263478575 4.0095878306130924e-07 2.1467452075084235 0.04619273405278568 0.09652189249895962 4440.239124801495 31.674082588844904 3332.867515566059 3249.4880980033217 10.54611969480977 -1.0230926961155289 2.1467448065496404 LRPLYDIPYMFEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRPLYDIPYMFEAR 14 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 196.95 2.2003e-08 1524890000.0 745000.0 1050900.0 1031230.0 1025430.0 959950.0 910610.0 1004700.0 826100.0 1177400.0 892040.0 False True 740989.0027772821 1085878.5712175337 1176418.220388155 1155249.3328602929 1082193.9424305782 847661.6740453698 956098.8226732841 887747.7768508012 887245.5463516974 835109.2434861321 0.8872958939887331 1.3002832619653142 1.4086997953432312 1.3833511506084497 1.2958711101232698 1.0150308844706808 1.1448787450634428 1.0630319132200374 1.0624305182492344 1.0 19.671605408223282 2.7438708730692762 24.741819230329156 1.0683896692182013 1.2732687774842295 0.33031497838755997 0.1393249856814804 454.6189232942565 2118184.629519173 0.04400129892466471 0.0454189461169961 554.4608329669198 -2.7438708730692762 0.20487910826602818 LRPS(ph)LDFDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRPSLDFDK 9 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 LRPS(1)LDFDK;LRPS(1)LDFDK 93.649 0.0056056000000000005 508230000.0 751480.0 649740.0 564570.0 562430.0 589820.0 764960.0 670750.0 1163080.0 834670.0 905770.0 True False 747434.1151772775 671366.2031238752 644056.5486695904 633633.5803327532 664930.080862965 712080.1157221491 638303.2599861692 1249874.9356005706 628976.7625049857 847962.9831312896 0.8814466315701811 0.7917399892206474 0.7595338021611157 0.7472420293547745 0.7841498910808165 0.8397537745016143 0.7527489674479588 1.4739734640127011 0.7417502591709261 1.0 19.693641761373225 1.7988650202962775 24.99999999997798 1.1234345322164934 0.7920099942022067 0.3407824163991484 0.17284018437919713 153.72295559501373 63742.93042739186 0.0699580462102445 0.04231705398441284 62.93105613182624 -1.7988650202962775 -0.3314245380142866 LRPS(ph)TSVDEEDEESER ddPTM_BT-474_Trastuzumab_2h_R1 1 LRPSTSVDEEDEESER 16 1 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 LRPS(0.37)T(0.37)S(0.26)VDEEDEESER 102.48 0.00091666 512000000.0 110480.0 136350.0 100680.0 147210.0 132650.0 143760.0 130360.0 132750.0 148320.0 133900.0 True False 109885.18795548196 140888.32732468453 114854.86887375242 165846.77090621876 149542.19122185136 133822.20957463948 124053.98877644008 142656.47909084123 111768.52338617608 125354.38736244246 0.8765962665332666 1.1239201936931664 0.9162413162426271 1.3230232654458194 1.1929553832804725 1.0675510637510728 0.9896262219985769 1.1380254181161804 0.8916203552015695 1.0 16.935652965345557 -3.209077353988745 9.963159330830697 1.0031479745494343 1.0661019094502058 0.0 0.137713769899857 0.0 0.0 0.0 0.0293293750409063 0.0006179063324805479 3.209077353988745 0.0629539349007715 LRPSGDDVELIGEEEDVSVYDIADHPDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LRPSGDDVELIGEEEDVSVYDIADHPDFR 29 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 0 ;; 222.45 1.0101e-34 193645000.0 66911.8 82134.0 73950.0 70751.8 74491.0 70975.0 79461.0 76351.0 77758.0 82911.0 False True 66551.55430339988 84867.78053894846 84361.51721507734 79708.97062565455 83976.98730725149 66068.66530717885 75617.1678595022 82048.69932252224 58595.582803817866 77619.54899632174 0.8574071244159593 1.0933815209744415 1.0868591521843949 1.0269187550861938 1.0819051178876473 0.8511858953252837 0.9742026182487297 1.0570623043224638 0.7549075401944761 1.0 16.244132430005195 2.7591959971408095 24.938773205070145 0.9453352507728289 1.0359207993084179 0.19207564138175093 0.10069284726649382 1479.2239232969782 1787704.8402187706 0.03039785906440629 0.03220953516149939 574.3756194955449 -2.7591959971408095 0.09058554853558898 LRPSTS(ph)VDEEDEESER ddPTM_BT-474_Trastuzumab_2h_R1 1 LRPSTSVDEEDEESER 16 1 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 LRPS(0.152)T(0.152)S(0.695)VDEEDEESER 111.66 0.00048425 278190000.0 61482.0 67772.0 66201.0 67665.0 49290.0 48659.0 59666.0 50038.0 54536.0 66643.0 True False 61150.98774329235 70027.75005096079 75521.52537059282 76231.38206215132 55566.789335281195 45295.317860965326 56779.7276337455 53772.0896478156 41096.33354496021 62389.78668405724 0.9801442029760707 1.122423296710122 1.2104789803663683 1.2218567511408256 0.8906391941468272 0.7260053330578201 0.9100804899570957 0.8618732729463914 0.6587029020162005 1.0 15.929022256293322 3.135224371501612 5.490226426079865 0.8309907415404916 1.1373021660724496 0.6436990312274256 0.10713308695895679 0.1261944995619854 5.710966561204772 0.030852733873662004 0.037250572092231544 1365.2883094237739 -3.135224371501612 0.30631142453195803 LRPVNQNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRPVNQNK 8 1 B4DXZ6;P51114;P51114-3;C9JZE0;C9JY20;C9J5B4;C9IZ22;C9JAJ4;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ; 89.75200000000002 0.012479 1166190000.0 803830.0 808980.0 740610.0 685630.0 651990.0 855920.0 706310.0 693840.0 1064910.0 807850.0 False True 799502.2685939088 835906.4102612638 844881.45050248 772430.6877007717 735017.0618525051 796752.2650189567 672143.0869337781 745617.8640481313 802477.1995629229 756292.3213648183 1.0571339229666026 1.1052689372183135 1.1171360949133957 1.0213387943789114 0.9718689997091079 1.0534977580905802 0.8887345117041742 0.9858858049789219 1.0610674958523427 1.0 19.528584445747473 3.5693213548850125 4.0722532867246874 0.9882734124424332 1.093735818201196 0.4713819188332121 0.04690701024688128 0.1892362484548883 5.606198913528498 0.012846132322269098 0.020196783798757785 3709.5510736154665 -3.5693213548850125 0.10546240575876287 LRPVS(ph)PEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRPVSPEEIR 10 1 Q08AE8;J3KNG6;Q08AE8-4;Q08AE8-3;Q08AE8-5;Q08AE8-2;K7EMJ7 Q08AE8 SPIRE1 Protein spire homolog 1 1 LRPVS(1)PEEIR 70.438 0.032692 210190000.0 148280.0 190890.0 145200.0 166320.0 218650.0 192980.0 169350.0 175630.0 159440.0 184250.0 True False 147481.6769554568 197243.65825455816 165642.89789897515 187376.0949468264 246493.78145991516 179639.74682605677 161157.8935201756 188736.4024310692 120148.14838654199 172491.00725563863 0.855010816516846 1.1435011099577794 0.9602987456237976 1.0862948621381026 1.4290239554030861 1.0414441290833407 0.9342973647393287 1.0941811137513635 0.6965473174405991 1.0 17.39616162400368 1.2616260184468708 24.996312821482803 0.8482735882006218 1.0729824463400075 0.22939657474872277 0.16088639818584857 282.1686281819964 305791.433581051 0.10638942221376935 0.038793970472176524 18.265266721394443 -1.2616260184468708 0.22470885813938568 LRQDLQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRQDLQDR 8 1 P12270 P12270 TPR Nucleoprotein TPR 0 ; 157.99 0.00033561 717910000.0 481850.0 567830.0 496960.0 520750.0 463910.0 562480.0 496040.0 457140.0 684790.0 564520.0 False True 479255.7731385678 586729.8782895168 566927.6483462448 586676.8966062994 522986.18869000376 523597.0815354976 472044.65014318255 491254.10810988414 516032.68021588144 528491.8502901122 0.9068366387778419 1.1101966434627804 1.0727273240543511 1.110096392752787 0.9895823150402676 0.9907382322888657 0.8931919193911063 0.9295396094380894 0.976425047865182 1.0 19.011521698860864 2.8316088140262687 2.3039999759170318 0.9431609942270719 1.0545527533465844 0.31221958578630105 0.061679281597518086 0.30309671941858823 3.1620611343160006 0.02062445280615376 0.021740115021069848 678.5921228686625 -2.8316088140262687 0.11139175911951249 LRQEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRQEAK 6 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 107.43 0.028522 407160000.0 655830.0 583870.0 501730.0 521020.0 531890.0 466170.0 500830.0 511970.0 866260.0 668270.0 False True 652299.084149563 603303.7599931319 572369.2228846614 586981.0785786163 599623.0387409761 433944.7651461439 476602.9395436056 550175.8011309826 652781.8302892994 625620.4364652686 1.0426435041588917 0.9643287284567859 0.9148825542185378 0.9382383380808926 0.9584454148090545 0.6936230657647873 0.761808457275459 0.8794082946513939 1.0434151319888008 1.0 19.25492811480832 4.533820502255825 0.8670915039461081 0.8713662207180286 1.096277204318707 0.15898880356495637 0.09978442374079173 2.881868502647022 2.0856235076805008 0.03614891809535284 0.5817884221786348 34183.81285956086 -4.533820502255825 0.2249109836006784 LRQEIYSSHNQPSTGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LRQEIYSSHNQPSTGGR 17 1 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 ; 67.685 0.023119 169053000.0 499710.0 397240.0 413760.0 375660.0 368680.0 440460.0 547920.0 546620.0 975480.0 479740.0 False True 497019.61688299984 410461.8932633488 472013.8115336084 423218.51748271246 415629.2126624364 410012.0369313133 521415.01634233684 587411.5600801178 735086.0247623168 449122.58247392246 1.106645793995136 0.9139195161427484 1.0509687776855778 0.9423229514567683 0.9254248814945065 0.9129178824026732 1.1609637027606197 1.307909205643706 1.6367157953029412 1.0 18.77674973898149 1.934504703215366 2.669205392150288 1.3508364306226204 0.9731934090060217 0.4847486146738925 0.15598806788105188 0.2050806789716366 2.6600763981237305 0.07819568521327365 0.041647977994708964 86.00123803885873 -1.934504703215366 -0.3776430216165987 LRQENMELAER ddPTM_BT-474_Trastuzumab_2h_R1 2 LRQENMELAER 11 1 P40222 P40222 TXLNA Alpha-taxilin 0 ; 140.75 3.5068000000000004e-05 811970000.0 719990.0 1214070.0 1202830.0 1101420.0 1130590.0 1225730.0 1247030.0 1103940.0 1343770.0 1495830.0 False True 716113.6538384097 1254479.5860291875 1372178.0088142173 1240859.6590688634 1274563.9349680564 1140998.1701580605 1186706.3947827844 1186321.608493735 1012615.8890954803 1400364.8487555075 0.5113764848316593 0.8958233899858548 0.9798717884368923 0.8860974053808941 0.9101656158398653 0.8147863545504274 0.8474265801783016 0.8471518044372573 0.723108617011762 1.0 20.417371322862337 4.740734247539653 24.862980183598975 0.8733304520069456 0.5113763501935313 0.6805205207360936 0.07534741878428575 105.39321894515088 1205448.576007186 0.017812489626739876 0.11793527880536162 55047.075055429304 -4.740734247539653 -0.36195410181341425 LRQPFFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LRQPFFQK 8 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 ; 155.82 0.00036745 2520900000.0 2122380.0 3087800.0 3637900.0 1954980.0 894280.0 1743480.0 2685850.0 1633160.0 6983800.0 2375080.0 False True 2110953.341898588 3190575.556385482 4150084.698806353 2202480.267551382 1008161.257187162 1622957.3313104652 2555925.174556621 1755034.6922184427 5262736.068125512 2223500.360991711 0.9493829544318467 1.4349336804076087 1.866464594121028 0.9905463953102515 0.4534117803054948 0.7299109817039133 1.1495051763412552 0.7893116290908421 2.366869895977108 1.0 21.084401208239324 3.6167934225125293 21.711441976926608 1.0122635219757647 1.4205047592635052 0.07889351051752602 0.5212698156415925 13.678168534838559 2380.1034125458764 0.1380124030596445 0.21380788672883694 4138.027976329566 -3.6167934225125293 0.4082412372877404 LRRES(ph)PESEGPIYEGLIL ddPTM_BT-474_Trastuzumab_2h_R1 4 LRRESPESEGPIYEGLIL 18 2 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 1 LRRES(0.996)PES(0.004)EGPIYEGLIL;LRRES(0.994)PES(0.006)EGPIYEGLIL;LRRES(1)PESEGPIYEGLIL;LRRES(0.983)PES(0.017)EGPIYEGLIL 172.3 8.7609e-12 429461000.0 396832.0 487905.0 427031.0 457491.0 491538.0 480990.0 489461.0 467921.0 610830.0 545920.0 True False 394695.50060418015 504144.6229801989 487153.25298000907 515409.3136923909 554132.4507260186 447740.29342867114 465783.9015074032 502839.64107469306 460299.1312026556 511078.9182143735 0.7722789701112734 0.9864320460362522 0.9531859672123498 1.0084730465759517 1.0842404782847768 0.876068797736762 0.9113737329154101 0.9838786597411078 0.9006419846290389 1.0 18.963186556452175 4.74219748198997 24.571480410024826 0.9665179339277931 0.7722788751681926 0.5073825110408673 0.05759961621881311 235.9439133409845 1594003.9334317136 0.013874178559795376 0.10257621395245488 55232.853651450605 -4.74219748198997 -0.19423905875960046 LRRY(ph)CVFS(ph)HEELICK ddPTM_BT-474_Trastuzumab_2h_R1 5 LRRYCVFSHEELICK 15 2 P41229-4;P41229-3;P41229-2;P41229-5;P41229 P41229-4 KDM5C Lysine-specific demethylase 5C 2 LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK 97.551 0.0077318 2987220000.0 1464600.0 2930360.0 2639590.0 2875700.0 2752110.0 1986480.0 1755660.0 1437960.0 1099430.0 1695900.0 True False 1456714.7563323588 3027895.261159971 3011221.3282724256 3239763.325147833 3102574.8954660343 1849159.3132709349 1670732.018527498 1545267.8770129273 828490.2081072249 1587666.2100669607 0.9175195309289357 1.907135921871303 1.8966337566291254 2.0405821479385104 1.954173286420942 1.1647028207477852 1.0523194409088255 0.9732951846016518 0.5218289605548025 1.0 20.59847620239782 2.5455328543202738 3.0761796953148606 0.9050822148510452 1.7758867323093002 0.6065485607674224 0.3265886243730765 0.1781183943353286 3.3148068498949423 0.11737309960316389 0.10535360390561933 351.18249042050485 -2.5455328543202738 0.8708045174582549 LRS(ph)GSASPMDLLS(ph)Y(ph)FK ddPTM_BT-474_Trastuzumab_2h_R1 1 LRSGSASPMDLLSYFK 16 1 P11678 P11678 EPX Eosinophil peroxidase;Eosinophil peroxidase light chain;Eosinophil peroxidase heavy chain 3 LRS(0.985)GS(0.031)AS(0.301)PMDLLS(0.853)Y(0.83)FK 55.18600000000001 0.022741 0.0 87572.0 116000.0 110510.0 113420.0 114030.0 123690.0 120770.0 95464.0 129510.0 99156.0 True False 87100.52208216395 119860.98987651912 126068.84742986046 127778.96037078543 128551.04459123776 115139.6014349412 114927.89371379746 102588.00843636974 97593.99584508945 92827.77918827742 0.9383023362597398 1.2912189748007623 1.3580939728630375 1.3765163993810352 1.3848337826816348 1.2403571693922566 1.2380765188909195 1.1051434100162645 1.0513447235136906 1.0 16.502268983393257 1.6236913021074117 1.5704779833749531 1.0132020201956295 1.2817060420259767 0.3976807354268532 0.12054953688065782 0.3627366693751815 1.7699972712974514 0.10135428447880442 0.036448665519650716 42.04276808241118 -1.6236913021074117 0.26850402183034716 LRS(ph)PFLQK ddPTM_BT-474_Trastuzumab_2h_R1 3 LRSPFLQK 8 1 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 1 LRS(1)PFLQK;LRS(1)PFLQK;LRS(1)PFLQK 125.72 0.00075686 4819080000.0 4368710.0 4482270.0 4118200.0 3981610.0 3723650.0 4474890.0 3876590.0 3664260.0 4756040.0 3980030.0 True False 4345189.350769307 4631459.647360564 4698006.7639639145 4485681.41775633 4197834.755697298 4165551.387058002 3689064.5316880913 3937705.687935259 3583977.6696709 3726021.077924885 1.166174119763502 1.2430041458434102 1.2608642478695673 1.2038797752197685 1.1266266797489985 1.1179623786180788 0.99008149834263 1.0568125100699288 0.9618779912181569 1.0 21.829204404884372 2.7016845605785167 1.089731822135536 1.001911672910281 1.2282235058030042 0.8685524147050544 0.03696196447780103 0.16256285907962514 0.40228935134195093 0.019090591511313256 0.0170452877487221 503.1350359281454 -2.7016845605785167 0.22631183289272316 LRS(ph)PPEALVQGR ddPTM_BT-474_Trastuzumab_2h_R1 6 LRSPPEALVQGR 12 1 Q9UHB6;Q9UHB6-4;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR 150.37 4.1217e-05 8192800000.0 1575580.0 1818670.0 1758560.0 1827640.0 1734580.0 1916920.0 1814700.0 1577900.0 2101520.0 1862680.0 True False 1567097.2523433955 1879203.3315407692 2006149.9623224665 2059019.0366078492 1955468.4813388535 1784407.8323443085 1726916.0281727945 1695650.9104138496 1583628.554925273 1743802.1676794225 0.8986668794137477 1.0776470900030666 1.150445847301684 1.1807641226572758 1.1213820682085214 1.0232857060379288 0.9903164820989416 0.9723872018523463 0.9081469126929107 1.0 20.733804946654022 2.404637243914271 2.4108126830210574 0.9639880097509961 1.0934951531797419 0.35628242473953575 0.07429177450494416 0.32618944152343843 3.8776518396529767 0.03136274259229546 0.02496607718895465 253.88511762676683 -2.404637243914271 0.1295071434287458 LRS(ph)PS(ph)NDSAHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LRSPSNDSAHR 11 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 LRS(1)PS(1)NDSAHR;LRS(1)PS(1)NDSAHR;LRS(1)PS(0.999)NDS(0.001)AHR;LRS(1)PS(1)NDSAHR 134.25 8.237299999999999e-05 2236207000.0 1590700.0 1813032.0 1319755.0 1711490.0 1676660.0 1782870.0 1760580.0 1516288.0 1574280.0 1684450.0 True False 1582135.8479433863 1873377.6741190136 1505565.0324838974 1928164.4585169747 1890172.7126575874 1659624.3933245486 1675414.0193312706 1629441.1101144517 1186319.7882712313 1576946.9588697993 1.003290465189334 1.1879776067177723 0.9547340980719723 1.2227199194441478 1.1986279576659176 1.0524287985653014 1.0624415804904705 1.0332884698178277 0.7522889603854963 1.0 20.58870270474593 1.4506993919064999 4.109510667545349 0.8754140215190538 1.099830075267835 0.4298831668952746 0.0995093857785913 0.1750307526233713 5.59443137648472 0.06572742498442227 0.02433961103724062 28.229253381535766 -1.4506993919064999 0.22441605374878115 LRS(ph)PSNDS(ph)AHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LRSPSNDSAHR 11 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 LRS(1)PS(0.392)NDS(0.608)AHR 156.72 1.76e-05 649560000.0 605030.0 619680.0 521350.0 642210.0 623040.0 625790.0 644610.0 593150.0 637490.0 587670.0 True False 601772.5857051526 640305.6741955301 594751.5483445652 723513.7201527245 702380.4509525993 582530.6102512081 613427.7516506673 637413.8649546711 480389.13142835285 550164.3974704002 1.0938050307726956 1.163844256625093 1.081043322830725 1.315086405953142 1.2766737618465915 1.0588300750277997 1.1149899093273674 1.1585879927625908 0.8731737888477209 1.0 19.069503256666735 1.2488471001074402 24.990873846901124 0.9365869012811601 1.1592008708733774 0.5331651123621532 0.08281225829790495 138.3286966792493 336073.2098765518 0.05819038277973759 0.02073006004639521 17.73564960789218 -1.2488471001074402 0.22261396959221735 LRS(ph)PSNDSAHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LRSPSNDSAHR 11 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 LRS(1)PSNDSAHR;LRS(0.96)PS(0.04)NDSAHR;LRS(0.982)PS(0.018)NDSAHR;LRS(1)PSNDSAHR 159.75 1.7135e-05 1859540000.0 1092930.0 1321100.0 1283850.0 1295040.0 1217360.0 1202030.0 1139320.0 1046390.0 1592440.0 1327370.0 True False 1087045.786315938 1365072.0148781862 1464604.9205757524 1458991.9312165573 1372383.5801419741 1118936.4953742616 1084206.7389749424 1124476.9352607578 1200004.499602764 1242656.110181369 0.874776036112904 1.0985114897788981 1.1786083926002582 1.174091463650079 1.1043953100924047 0.9004393783658698 0.8724913756040676 0.904897924733688 0.965677060427941 1.0 20.244995672811672 2.7402524549341813 24.86375025107742 0.9167499452697939 1.0967977522216052 0.45130746897094287 0.08585532233407252 118.64930424347284 1743719.103823306 0.027637664515192277 0.027952790353100835 549.8604142657829 -2.7402524549341813 0.18004780695181133 LRS(ph)YEDMIGEEVPSDQYYWAPLAQHER ddPTM_BT-474_Trastuzumab_2h_R1 20 LRSYEDMIGEEVPSDQYYWAPLAQHER 27 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(0.993)Y(0.007)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.999)Y(0.001)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.9)Y(0.094)EDMIGEEVPS(0.003)DQY(0.002)Y(0.002)WAPLAQHER;LRS(0.998)Y(0.002)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.962)Y(0.029)EDMIGEEVPS(0.01)DQYYWAPLAQHER;LRS(0.899)Y(0.101)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.999)Y(0.001)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.969)Y(0.031)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.664)Y(0.336)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.999)Y(0.001)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.775)Y(0.225)EDMIGEEVPSDQYYWAPLAQHER;LRS(0.933)YEDMIGEEVPS(0.067)DQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER;LRS(1)YEDMIGEEVPSDQYYWAPLAQHER 290.37 1.0646999999999995e-70 26810122000.0 4733149.2 4493132.0 4047781.0 4600517.0 4155531.0 5162136.0 4776340.0 4706213.0 5561121.0 4853059.0 True False 4707666.450609514 4642683.182464345 4617673.380856834 5182941.980498367 4684713.241088058 4805289.688681075 4545290.186809303 5057414.511725394 4190657.244753608 4543332.619707158 1.0361703279635617 1.021867331994634 1.0163626059045767 1.1407797787062386 1.0311182634455702 1.057657471046177 1.0004308659008707 1.113150837732715 0.9223751804074866 1.0 22.115319499027848 1.230254805063015 24.99999537525683 0.9611875864149599 1.0528365782187894 0.39615149630644775 0.04493677367962056 193.4820120647937 582346.9504863746 0.03880564453454267 0.010349952654256629 16.992403219215525 -1.230254805063015 0.09164899180382946 LRVDFADTEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LRVDFADTEHR 11 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 ;; 136.7 5.6345e-05 730376000.0 231526.0 315219.0 301481.0 328294.0 307477.0 321229.0 308322.0 268731.0 373107.0 330249.0 False True 230279.4897409568 325710.873861091 343926.9042801722 369855.986739258 346632.3733910374 299023.1953217292 293407.2869555809 288785.0718083682 281159.77922765614 309172.2260796065 0.744825926510177 1.0534933166254916 1.1124120320937785 1.1962781761775279 1.1211627182248431 0.967173536618829 0.9490092000697163 0.9340589077817457 0.909395332151415 1.0 18.238051197655135 2.5737179554343084 6.012533386018117 0.94375045701431 1.0578578940053762 0.14250098467764127 0.11342708966829645 0.42213505450849914 21.657882977343593 0.03863303931229544 0.036205948097490816 374.72956198144095 -2.5737179554343084 0.11410743699106618 LRVQS(ph)PEPPAPER ddPTM_BT-474_Trastuzumab_2h_R1 3 LRVQSPEPPAPER 13 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 LRVQS(1)PEPPAPER;LRVQS(1)PEPPAPER;LRVQS(1)PEPPAPER 115.58 0.00039527 1463310000.0 718370.0 787920.0 774540.0 781260.0 753640.0 785830.0 824400.0 689203.0 781940.0 787980.0 True False 714502.3757384102 814145.4408923029 883588.4995776338 880167.435895607 849611.5868257524 731507.4217448446 784520.6224861698 740634.8275619217 589241.3644591853 737690.4417763809 0.9685666714318093 1.1036410325878916 1.1977768038446126 1.193139270960509 1.1517183071802612 0.9916184083710677 1.0634821573626743 1.0039913568331598 0.798765079618321 1.0 19.492656017274896 1.8989965332240764 1.1872987250909801 0.9140738340810368 1.1213785730802504 0.4531156511564267 0.08542409441856569 0.4283118261193162 1.114479905196742 0.06890000999569783 0.029811710673934396 79.24950043269497 -1.8989965332240764 0.20730473899921353 LS(ph)EEISAPVSER ddPTM_BT-474_Trastuzumab_2h_R1 1 LSEEISAPVSER 12 0 A0A2R8YCV2;Q8NCS4 A0A2R8YCV2 ZMYM6NB Uncharacterized protein ZMYM6NB 1 LS(0.5)EEIS(0.5)APVS(0.001)ER 54.486 0.086397 1319800000.0 323750.0 3974200.0 395650.0 185960.0 285170.0 429300.0 569740.0 317730.0 6048300.0 407580.0 True False 322006.96597200615 4106478.84454537 451354.0809485508 209502.51693309177 321484.70916498516 399623.50146349944 542179.4995818421 341440.6260002489 4557777.50806775 381567.89545320644 0.8439047671700552 10.762118337204205 1.182893231655289 0.5490569815478202 0.8425360545156515 1.047319510434303 1.420925360971131 0.89483583411729 11.944866332777448 1.0 18.541580264703406 -0.3881682871950447 9.727972203661857 1.0000015605180463 2.978271434545839 0.02225819183740374 4.119757943552619 0.0 0.0 3.851276319703193 0.9077545319432054 0.40910210375243006 0.3881682871950447 1.9782698740277929 LS(ph)EGS(ph)QPAEEEEDQETPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 LS(1)EGS(1)QPAEEEEDQETPSR;LS(1)EGS(1)QPAEEEEDQETPSR 277.17 2.4804999999999998e-39 976040000.0 3274700.0 2878300.0 2530800.0 2697630.0 2793400.0 3417500.0 3140700.0 3150000.0 3675700.0 3366400.0 True False 3257069.379053377 2974102.47553091 2887114.6418920597 3039149.6814057636 3149122.9322210257 3181256.268929672 2988772.342360886 3385068.995375899 2769872.986856575 3151553.4698799555 1.0334806025605654 0.9436941190923837 0.9160925459411708 0.9643338469270923 0.9992287810814067 1.0094248120279703 0.9483489240862316 1.0740953716088588 0.8788913192585246 1.0 21.58763170931355 3.2999203681145457 6.137448003120041 0.9930274907092008 0.9590338891555193 0.01761426251822862 0.054393578699958055 0.5539411659174646 40.40648958020215 0.014739451067729942 0.019885834639443614 1994.8964988211342 -3.2999203681145457 -0.033993601553681474 LS(ph)ESPASLPSCPPVETALINQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSESPASLPSCPPVETALINQR 22 0 Q2TAZ0 Q2TAZ0 ATG2A Autophagy-related protein 2 homolog A 1 LS(0.333)ES(0.333)PAS(0.333)LPSCPPVETALINQR 84.499 0.002114 102860000.0 41448.0 47316.0 42180.0 37813.0 44532.0 49719.0 43574.0 40328.0 52232.0 57248.0 True False 41224.84857330571 48890.88445687398 48118.577364867626 42600.12192294575 50202.88623815667 46282.04255593695 41466.15915115523 43337.480141434644 39360.12347294193 53594.38362752135 0.7692009084350447 0.9122389539296415 0.8978287295790107 0.7948616821310001 0.9367191642143805 0.8635614298243477 0.7737034432440393 0.8086198069302981 0.7344076152921748 1.0 15.709794202298431 2.3305277486545317 9.4169294620728 0.811396287495784 0.8667946988392417 0.019056741646462316 0.08096169949003135 0.7028585212747505 65.5166078606279 0.026117583454672674 0.021826631918909507 214.05616906767813 -2.3305277486545317 0.05539841134345769 LS(ph)FSDTYQDYEEYWR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSFSDTYQDYEEYWR 15 0 Q9UHI6;E9PJ60 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 1 LS(0.981)FS(0.019)DTYQDYEEYWR;LS(0.998)FS(0.002)DTYQDYEEYWR;LS(1)FSDTYQDYEEYWR;LS(0.984)FS(0.015)DT(0.001)YQDYEEYWR 344.18 5.2333e-70 284401000.0 219222.0 193203.0 197225.0 199380.0 204401.0 246289.0 234867.0 247524.0 268067.0 251946.0 True False 218041.7331098539 199633.64506132022 224992.5656895687 224621.48755710828 230430.2557703551 229263.62113194444 223505.58593093048 265995.4977814042 202005.47976376797 235866.59057817722 0.9244282226464144 0.8463837314643012 0.9538975619143298 0.9523243075947978 0.9769516539222615 0.9720054907732079 0.9475932364268024 1.1277370700503717 0.8564395630114215 1.0 17.84761155634336 3.688523180010921 0.8726924119229964 1.000420479997621 0.8800766387788562 0.18104427323065908 0.06719769281098224 1.0236458873926044 1.439334369266422 0.027458699351148138 0.08792041895674962 4881.161532383076 -3.688523180010921 -0.12034384121876485 LS(ph)GPAELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGPAELR 8 0 Q96PC5;Q96PC5-11;Q96PC5-10;Q96PC5-9;Q96PC5-13;Q96PC5-6;G3V599;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5-8;Q96PC5-5;Q96RT6 Q96PC5 MIA2;CTAGE1 Melanoma inhibitory activity protein 2;cTAGE family member 2 1 LS(1)GPAELR 73.327 0.046001 224620000.0 446100.0 466020.0 469280.0 402920.0 485050.0 504140.0 499460.0 411150.0 545810.0 494630.0 True False 443698.2471663691 481531.1939849609 535350.5449451177 453929.63068768143 546818.2423834072 469289.9884179097 475299.21167751425 441832.1007773971 411302.43897929316 463062.28992595157 0.9581826393967884 1.0398842757460616 1.1561091382127568 0.9802776873933514 1.1808740514604397 1.013448943322407 1.0264260813669788 0.9541526278204399 0.8882227033539368 1.0 18.820846748533057 1.8797767081260586 2.013384968631112 0.9380571162712629 1.0613056565332701 0.3179329675958178 0.07026506624589376 0.35032783051284827 2.647930404745887 0.04239734066372911 0.019906244097596604 75.81876537235844 -1.8797767081260586 0.12324854026200727 LS(ph)GSRQDLIPSYSLGSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGSRQDLIPSYSLGSNK 18 1 Q9NQT8;H0YBA8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 LS(0.587)GS(0.413)RQDLIPSYSLGSNK 258.87 6.8066999999999985e-31 839830000.0 1121000.0 902620.0 826810.0 1026000.0 763650.0 1029600.0 952880.0 926520.0 1527900.0 927530.0 True False 1114964.6605548079 932663.1610546884 943217.6612386476 1155891.4948018494 860896.3009918345 958426.1754177011 906785.5540449081 995661.6271732291 1151369.5178110718 868334.2413016144 1.2840270572348957 1.0740831314640389 1.0862380133999836 1.331159638561751 0.9914342427650548 1.1037525987470456 1.0442816958198677 1.146634072244754 1.3259519929620576 1.0 19.727890949652657 3.217974184273999 24.999421084839316 1.1078602517352802 1.1776319222099574 0.12556031986046656 0.11501361647457667 660.452563267313 802028.0558291569 0.033088738859997295 0.039589395387454415 1651.8636037378794 -3.217974184273999 0.06977167047467714 LS(ph)KSDEQLSSLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSKSDEQLSSLDR 13 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 LS(0.63)KS(0.37)DEQLSSLDR 84.035 0.0060131 420840000.0 200680.0 204040.0 190170.0 196490.0 141290.0 245100.0 215050.0 184910.0 255410.0 213060.0 True False 199599.56117764418 210831.34805521547 216944.28301272835 221365.6138534264 159282.44400855905 228156.81390333944 204647.2099292223 198708.92315395435 192467.62781865685 199462.32839015688 1.00068801356424 1.0569983302451995 1.0876453953168341 1.1098116403235088 0.7985590326459829 1.1438591725303382 1.0259942896531498 0.9962228194051318 0.9649322224003216 1.0 17.605756770876013 LS(ph)KSQGGEEEGPLSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSKSQGGEEEGPLSDK 16 1 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 LS(0.596)KS(0.404)QGGEEEGPLSDK 61.963 0.04895 519540000.0 256000.0 228160.0 226920.0 226520.0 228120.0 297150.0 311590.0 313230.0 490450.0 350440.0 True False 254621.72444427415 235754.1676743675 258868.3635760021 255197.40877438092 257169.72982682768 276608.71991586045 296517.2013106084 336604.81314971164 369585.1691932984 328074.6191732214 0.7761091823742556 0.7185992268115404 0.7890533081418322 0.7778639183290136 0.7838757245986274 0.8431274586645569 0.9038102431021924 1.0260007738422043 1.126527770190475 1.0 18.323664461437666 2.0251063854506732 1.3359434148928357 1.0709845159155567 0.7667113943073613 0.9183009081736366 0.0364814598448033 0.10524382567377741 0.35000763573971755 0.024784026864428047 0.011865326088070095 105.95132333981216 -2.0251063854506732 -0.3042731216081953 LS(ph)LCEDSPMVTLTVDNVHLEHGVVYEYVSTAGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSLCEDSPMVTLTVDNVHLEHGVVYEYVSTAGVR 34 0 Q8TCU6;Q8TCU6-3;Q8TCU6-2;H0YDZ4 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 1 LS(0.797)LCEDS(0.203)PMVTLTVDNVHLEHGVVYEYVSTAGVR 179.95 1.4177e-19 46281000.0 12366.0 11678.0 10478.0 12241.0 11436.0 13939.0 14972.0 6773.8 18047.0 15278.0 True False 12299.422829991754 12066.695170499925 11953.21132359135 13790.709344901989 12892.306813517469 12975.429738876583 14247.747161405798 7279.295352659441 13599.558667410445 14302.944959846134 0.8599224051075469 0.8436510945386266 0.8357167951878868 0.9641867030613493 0.9013742868836545 0.9071858820196542 0.9961408088617206 0.5089368219688478 0.9508222751041576 1.0 13.804024606380846 LS(ph)LQGHPTDLQTSNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLQGHPTDLQTSNVK 16 0 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 LS(1)LQGHPTDLQTSNVK;LS(0.997)LQGHPT(0.003)DLQTSNVK 193.64 2.2008e-10 950710000.0 652400.0 454640.0 459270.0 401030.0 410260.0 662280.0 631370.0 614000.0 907120.0 781510.0 True False 648887.550888454 469772.41756431595 523931.22395359766 451800.3568814674 462504.17919846746 616498.1424394278 600828.2210323785 659819.7978288258 683572.4307852475 731633.3627156264 0.8869026263099291 0.6420872003712994 0.7161117174986469 0.6175229013675728 0.632152937205838 0.8426326270184733 0.8212149030523508 0.9018448740223547 0.9343100870195563 1.0 19.4807613383793 2.002989686358098 1.079110209108234 0.9675267149717623 0.6964576327714869 0.6367840502166776 0.07896472836958322 0.3194003864719449 0.6856941638367335 0.06109038008301585 0.02858281551317287 100.69077564841068 -2.002989686358098 -0.2710690822002755 LS(ph)NGSFSAPSLTNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSNGSFSAPSLTNSR 15 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 1 LS(1)NGSFSAPSLTNSR 183.88 5.1087e-07 102720000.0 70478.0 70171.0 64641.0 61900.0 46466.0 80049.0 74256.0 60072.0 82808.0 79222.0 True False 70098.55427884188 72506.59931573467 73741.89093035569 69736.5336532499 52383.16967444057 74515.40104507728 70663.95359453309 64554.877679435165 62401.077970350954 74165.98413463337 0.9451577444397166 0.9776260662046037 0.9942818367581042 0.9402765225451241 0.7062964280140812 1.0047112825983622 0.9527811761555938 0.8704108552277661 0.8413705919020018 1.0 16.1784700330741 3.4694310546681617 24.99933647808411 0.8909664363207701 0.9719484801637065 0.150559933203257 0.08178099969477982 314.8853370607292 1023626.3333546342 0.022336578282819673 0.030298682878839203 2947.3455410112133 -3.4694310546681617 0.08098204384293639 LS(ph)PANQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSPANQR 7 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LS(1)PANQR 131.5 0.0084892 0.0 728820.0 862440.0 791180.0 811410.0 760260.0 818620.0 794030.0 814930.0 1003500.0 867010.0 True False 724896.1140995136 891145.7940440113 902571.26694016 914134.4228042574 857074.6045859383 762030.7262242017 755619.7354108368 875744.2147306906 756200.8712110814 811676.679515394 0.8930848112234885 1.0979073521935652 1.1119837365279903 1.1262297487098374 1.0559310452256048 0.9388353090040321 0.9309368551305112 1.0789323345516686 0.9316528246968558 1.0 19.63054563811569 2.8677568154323665 6.904677462741313 0.9854934783239903 1.0672542525644817 0.22403767139880915 0.07332715966630506 0.3989557117599454 20.67278713841304 0.022884665500782823 0.02432735363420794 737.491153985896 -2.8677568154323665 0.08176077424049144 LS(ph)PCLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPCLHR 7 0 Q9C073;D6RJ87;D6RFX7;K7ENS5 Q9C073 FAM117A Protein FAM117A 1 LS(1)PCLHR;LS(1)PCLHR 128.36 0.0024252 537420000.0 772370.0 794750.0 720410.0 696530.0 689400.0 892560.0 780820.0 725510.0 916300.0 782830.0 True False 768211.6457383749 821202.7733134798 821837.4660840282 784710.6265831697 777191.0036060623 830859.4280602401 743048.7535779367 779651.2402651318 690490.142790946 732869.1191855185 1.0482248816707336 1.1205312815283197 1.1213973198889668 1.0707377429891791 1.06047721654557 1.133707788074935 1.0138901123351076 1.063834209758497 0.9421738816861722 1.0 19.483196049383235 1.60537727114877 1.393910989116187 0.9773042848265301 1.0907942306046416 0.5511110295549191 0.03830213165737172 0.281356997593201 1.056049011644777 0.030788804107513886 0.01096405010310317 40.30670261762838 -1.60537727114877 0.11348994577811156 LS(ph)PDFAEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPDFAEELR 10 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 LS(1)PDFAEELR;LS(1)PDFAEELR 212.27 4.5709e-08 237950000.0 307080.0 319320.0 294460.0 280930.0 249180.0 302430.0 313330.0 257110.0 286690.0 284160.0 True False 305426.7153997953 329948.37316698354 335917.4085077976 316495.7091955983 280911.595994428 281523.72594364366 298173.0308631633 276296.85377812566 216039.09094918284 266024.6655183844 1.1481142728048572 1.240292408690883 1.262730310564315 1.1897231731458597 1.055960714947369 1.0582617419894402 1.1208473104632366 1.03861366854733 0.8121017294700924 1.0 18.02120049148399 2.459963286283733 0.6165543287519821 0.941147827847708 1.2280159733837093 0.6470391658297414 0.0743842564199795 0.5300389981046932 0.4106912719296818 0.06551666398900666 0.05568404077482565 288.37877076299077 -2.459963286283733 0.28686814553600126 LS(ph)PENNQVLTK ddPTM_BT-474_Trastuzumab_2h_R1 7 LSPENNQVLTK 11 0 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 LS(1)PENNQVLTK;LS(1)PENNQVLTK;LS(1)PENNQVLTK;LS(1)PENNQVLTK;LS(1)PENNQVLTK;LS(1)PENNQVLTK;LS(1)PENNQVLTK 248.61 3.0935000000000004e-16 6952450000.0 5585240.0 4606040.0 4157930.0 3632310.0 3825910.0 5195510.0 5124680.0 4868620.0 6419020.0 4935080.0 True False 5555169.688418496 4759349.256990022 4743330.402624561 4092160.0735708666 4313116.960554793 4836356.62261501 4876779.650221282 5231941.146751424 4837138.531461245 4620118.969265438 1.2023867189077437 1.0301356498936045 1.0266684546823939 0.8857261254078675 0.9335510598854869 1.046803481639338 1.0555528294105057 1.1324256326635809 1.0469727216202642 1.0 22.13949857121646 -0.0094204673787672 9.051290721142252 1.0000000006781804 1.0393873914169782 0.019947000079643673 0.08405904587109062 0.0 0.0 0.08716556144681128 0.020545119861657656 0.9785421394135693 0.0094204673787672 0.03938739073879782 LS(ph)PEVAPPAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPEVAPPAHR 11 0 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 LS(1)PEVAPPAHR;LS(1)PEVAPPAHR 120.84 0.00027317 1103780000.0 1188920.0 1200310.0 1009370.0 952350.0 901800.0 1275650.0 1201590.0 1017440.0 1320470.0 1169810.0 True False 1182518.986821429 1240261.5927472815 1151480.5223986837 1072917.4123533533 1016638.884612632 1187467.3180571008 1143464.5011804434 1093366.539255634 995057.861891477 1095151.7242752707 1.0797764004836632 1.1325020682116342 1.0514346979279874 0.9796975054423339 0.9283087101793174 1.0842947983695328 1.0441151448098611 0.9983699199114916 0.9086027441083271 1.0 20.062699326544212 3.989574332227061 4.02895538693881 0.996833338368119 1.1052270088393685 0.4657839165443286 0.049159364429633146 0.19027166796892922 7.127713515198504 0.013162120399651025 0.027886463959172356 9762.798645590925 -3.989574332227061 0.10839367047124948 LS(ph)PGESAYQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSPGESAYQK 10 0 A0A0G2JHC2;Q6NYC8-2;Q6NYC8 A0A0G2JHC2 PPP1R18 Phostensin 1 LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK 232.39 2.4693e-10 1104340000.0 1851650.0 1695420.0 1627170.0 1487490.0 1404800.0 1856730.0 1794940.0 1603610.0 2262380.0 1701850.0 True False 1841680.9221376537 1751851.0297969652 1856261.392384817 1675806.081484214 1583692.953098051 1728378.6253722894 1708111.8948633254 1723279.5211665838 1704846.763338843 1593236.4759729127 1.1559369559456187 1.0995549350118878 1.165088435005411 1.0518250785470373 0.994009977163601 1.0848224048579178 1.07210192625063 1.0816219356980639 1.0700525559445124 1.0 20.603528983954902 3.7272521216673407 24.607214650234045 1.0559362170599205 1.136129590940414 0.5906290367888196 0.033917611014439665 434.14568644681816 944699.5557232006 0.00905707085528288 0.014173782569190916 5336.446031328534 -3.7272521216673407 0.08019337388049363 LS(ph)PHKVQGR ddPTM_BT-474_Trastuzumab_2h_R1 8 LSPHKVQGR 9 1 Q9GZP8-2;Q9GZP8 Q9GZP8-2 IMUP Immortalization up-regulated protein 1 LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR 100.55 0.0027669 32050705000.0 9638010.0 8504700.0 7335220.0 7103110.0 6824740.0 9140160.0 8999560.0 7403480.0 11673760.0 8395550.0 True False 9586120.025043588 8787773.798300285 8367955.2171247965 8002362.997701726 7693830.18559682 8508322.25282231 8564216.901142215 7955965.271709687 8796918.268369775 7859738.811208014 1.219648674759236 1.1180745326764407 1.0646607245004203 1.0181461738003723 0.9788913309212505 1.0825197194453096 1.089631234174043 1.0122429590617508 1.1192379899221765 1.0 22.90604994007321 4.606107347482423 1.8036153846826417 1.0435287902939134 1.2502346084421363 0.632413351055428 0.04153212100046274 0.40739300348394847 1.6662022743777392 0.010780242365591676 0.13097963282756936 40374.51770406162 -4.606107347482423 0.20670581814822286 LS(ph)PIMTEQDDLGEGDVHSMVYPPSAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPIMTEQDDLGEGDVHSMVYPPSAAK 27 0 Q12778 Q12778 FOXO1 Forkhead box protein O1 1 LS(0.994)PIMT(0.006)EQDDLGEGDVHSMVYPPSAAK;LS(0.992)PIMT(0.008)EQDDLGEGDVHSMVYPPSAAK 149.49 6.9693e-08 118990000.0 105276.0 83951.0 76682.0 67637.0 81850.0 95977.0 101027.0 96808.0 120243.0 94174.0 True False 104709.20571326328 86745.2582855489 87478.1590681076 76199.8372650222 92273.11233704138 89342.33589555621 96139.93804938164 104032.30454106336 90610.72382365138 88163.73469358223 1.1876675378735453 0.9839108856610564 0.9922238363896745 0.8642991081294231 1.0466107482599452 1.0133683220892387 1.0904703434299958 1.1799897645288417 1.0277550530110118 1.0 16.427897718587694 2.235833809042011 4.832070540204809 1.100235112211035 1.006252103451318 0.0685427131186207 0.08778540270771139 0.31007245040563663 19.079115260983244 0.03286291692677923 0.025370608366995 172.1209795621195 -2.235833809042011 -0.09398300875971688 LS(ph)PIPEEVPK ddPTM_BT-474_Trastuzumab_2h_R1 6 LSPIPEEVPK 10 0 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 LS(1)PIPEEVPK;LS(1)PIPEEVPK;LS(1)PIPEEVPK;LS(1)PIPEEVPK;LS(1)PIPEEVPK;LS(1)PIPEEVPK 174.24 3.321e-06 6176490000.0 8528870.0 6933230.0 6061160.0 5352630.0 5543590.0 8031870.0 7613630.0 7482000.0 10625900.0 7278190.0 True False 8482951.51156653 7163998.369323967 6914518.643452851 6030272.409182476 6249533.3270677915 7476645.731888287 7245329.6300089555 8040344.832826166 8007289.324765158 6813689.683028039 1.2449864766657033 1.0514124802555214 1.014797997137434 0.8850230476746033 0.9172025169614808 1.0972976580532543 1.0633489294436276 1.1800280328077688 1.175176695338828 1.0 22.70000481336086 2.2729228415403453 2.3613346541479396 1.1309695216448794 1.0177570415025423 0.10382046400983813 0.10367374006308695 0.5262116738431625 6.0123127005347925 0.047180350637961194 0.03359722823373416 187.4661418784863 -2.2729228415403453 -0.11321248014233709 LS(ph)PLPVVSR ddPTM_BT-474_Trastuzumab_2h_R1 8 LSPLPVVSR 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR 178.1 5.3866e-05 2257523000.0 2266688.0 2311286.0 1988953.0 1732075.0 1918043.0 2086934.0 2071991.0 2060848.0 2362554.0 2069562.0 True False 2254484.4036607104 2388215.7573081073 2268980.2941106088 1951355.517406348 2162294.406918455 1942669.1646942135 1971760.8795557262 2214638.9425341003 1780334.2233016677 1937480.7813188278 1.1636163957848917 1.2326397145898231 1.1710982199091193 1.0071612251441666 1.1160339899973606 1.0026779018534853 1.0176931294325222 1.1430507924969522 0.9188912945447688 1.0 20.88575056908729 3.8348445617165323 4.9218104190697956 1.0432213073897123 1.1983261362889934 0.5748881377009245 0.062303954942027125 0.16260004834140127 6.362220856347243 0.015687545196660057 0.029065305971033236 6836.669123487918 -3.8348445617165323 0.15510482889928112 LS(ph)PPPEELPAS(ph)PLPEALHLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPPPEELPASPLPEALHLSR 21 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 2 LS(1)PPPEELPAS(1)PLPEALHLSR;LS(1)PPPEELPAS(1)PLPEALHLSR 157.11 4.607e-09 74198000.0 32407.0 40469.0 37748.0 34722.0 39106.0 38926.0 38538.0 44199.0 34270.0 37269.0 True False 32232.52431275619 41815.98620097289 43062.5902885022 39117.80163987312 44085.91730057834 36235.13724194779 36673.76971054344 47497.35381797437 25824.617694473094 34890.46051240382 0.9238205469170373 1.1984933872141639 1.2342224681498006 1.1211603706396036 1.2635521759566763 1.0385399536089794 1.0511116555055398 1.3613277990724342 0.7401627068032607 1.0 15.090545019058714 1.2294787862082044 24.999925737749674 0.8700813621155682 1.157853525542369 0.41369190862546956 0.1325002257845222 194.18264793455162 534515.1160886793 0.11552479426365142 0.03053026227981458 16.962067463705978 -1.2294787862082044 0.2877721634268008 LS(ph)PSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPSFR 6 0 B4DF95;Q15735 B4DF95 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 1 LS(0.845)PS(0.155)FR;LS(0.987)PS(0.013)FR 129.55 0.016934 497120000.0 763750.0 898350.0 820590.0 822420.0 760740.0 870810.0 843620.0 818850.0 1004600.0 832940.0 True False 759638.0548606012 928251.0366859562 936121.9393038568 926538.2876753781 857615.7297407545 810612.9543662468 802810.8776586404 879956.7450360483 757029.7909503264 779781.0560841892 0.9741683885926394 1.190399573628187 1.2004933077045516 1.1882031250260896 1.0998160612511236 1.0395391732608708 1.0295337023062596 1.1284664306349135 0.9708235216073183 1.0 19.572709580922332 2.9685308688987564 4.299884940124971 1.049222876605559 1.1466861907079324 0.3086472852435034 0.07191864090985074 0.27780014067754816 11.765222998841386 0.022110530510116046 0.0246601130923173 930.102622486235 -2.9685308688987564 0.09746331410237352 LS(ph)PSTSGPHSHDYLPQER ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPSTSGPHSHDYLPQER 18 0 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 LS(0.995)PS(0.005)TSGPHSHDYLPQER;LS(0.991)PS(0.008)TSGPHSHDYLPQER 129.07 3.6734e-05 833580000.0 238691.0 296590.0 338750.0 269420.0 321670.0 374280.0 318630.0 142265.0 351720.0 282460.0 True False 237405.9141770632 306461.81885755865 386443.05553221644 303528.5443757449 362632.7678125362 348406.9045603505 303216.6496151971 152881.53670703238 265043.3188065384 264433.1609738275 0.8977917644775297 1.158938681249176 1.4614016415681883 1.1478459935128442 1.3713588964298926 1.317561319757602 1.1466665092174588 0.5781481268991221 1.0023074179897253 1.0 18.0125435823438 1.9235603541349724 7.4737626137867785 0.8223508658684516 1.2362404035900234 0.4462815931395592 0.1809930595494025 0.22420072326101814 19.396491059501596 0.0763778891683376 0.0476579775591204 83.86106126867757 -1.9235603541349724 0.4138895377215718 LS(ph)PSWNPK ddPTM_BT-474_Trastuzumab_2h_R1 5 LSPSWNPK 8 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 LS(0.984)PS(0.016)WNPK;LS(0.999)PS(0.001)WNPK;LS(0.999)PS(0.001)WNPK;LS(1)PSWNPK;LS(1)PSWNPK 198.72 0.00014027 2062550000.0 3000940.0 2570350.0 2251170.0 2127090.0 2235810.0 2909790.0 2594640.0 2493170.0 3066090.0 2504870.0 True False 2984783.2724757767 2655902.545940614 2568115.1684795856 2396379.375904547 2520527.150815887 2708643.066208892 2469127.3507126593 2679223.005460738 2310493.2030010805 2345007.052072901 1.2728248598814818 1.1325776370663332 1.0951417677867814 1.021907108461032 1.0748484310901465 1.1550681964109875 1.052929605704188 1.142522366016939 0.9852819849555202 1.0 21.161160830647045 4.752768753328512 1.8655720897303254 1.075172707508852 1.3402899299734967 0.5816385320282849 0.053122411458530465 0.6178351508270185 2.1540268947925325 0.013205724307153806 0.2892817545231488 56593.786661233884 -4.752768753328512 0.26511722246464475 LS(ph)PTFPESIEHPLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSPTFPESIEHPLAR 15 0 M9T4I7;Q5U5Q3 M9T4I7 MEX3C RNA-binding E3 ubiquitin-protein ligase MEX3C 1 LS(0.997)PT(0.003)FPESIEHPLAR;LS(0.984)PT(0.016)FPESIEHPLAR;LS(0.989)PT(0.011)FPESIEHPLAR;LS(0.997)PT(0.003)FPESIEHPLAR 227.0 5.0862e-13 622587000.0 279196.0 288646.0 249367.0 245409.0 221213.0 281411.0 261989.0 262894.0 312035.0 303157.0 True False 277692.839757592 298253.4076198081 284475.70606318006 276477.75423764845 249383.16431782427 261957.71994023945 249315.591174829 282512.4852286831 235138.15530478317 283809.2607142344 0.9784488323557526 1.0508938533902086 1.0023482156546566 0.9741674867897705 0.878699883471831 0.9230062446905244 0.8784617899620378 0.9954308203957551 0.8285076910916667 1.0 18.1145621398343 3.4885694959082025 3.7140543465714417 0.9200377239500644 1.0129537868321212 0.3976461786883956 0.051806914408617726 0.22016957124844042 6.606594278786841 0.01377043977742762 0.020676870184573794 3080.133185727361 -3.4885694959082025 0.09291606288205678 LS(ph)PTPSMQDGLDLPSETDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSPTPSMQDGLDLPSETDLR 20 0 Q9UK58;Q9UK58-6;Q9UK58-5;Q9UK58-4 Q9UK58 CCNL1 Cyclin-L1 1 LS(0.85)PT(0.15)PSMQDGLDLPSETDLR;LS(0.991)PT(0.009)PSMQDGLDLPSETDLR;LS(0.935)PT(0.064)PSMQDGLDLPSETDLR;LS(0.983)PT(0.017)PSMQDGLDLPSETDLR 266.83 9.0939e-37 842360000.0 519270.0 495334.0 476410.0 453430.0 487433.0 492557.0 484729.0 502057.0 589120.0 516297.0 True False 516474.3080163211 511820.89275427343 543484.386970047 510834.19150877465 549504.7033082593 458507.69394446025 461280.80642539845 539523.0427337893 443939.26980356005 483346.4834358992 1.0685384619847251 1.058910968206414 1.1244198635865803 1.0568695728941222 1.1368753516154089 0.9486107992037702 0.9543481172064282 1.1162242019400979 0.9184700520582865 1.0 18.882698219870157 2.7402143061035686 24.998151774119787 1.0019467890572822 1.0876135024034255 0.44351849334233096 0.05572806209985119 169.79314596988053 2566709.016334479 0.017871859868208384 0.018090047349236346 549.8121161376545 -2.7402143061035686 0.08566671334614329 LS(ph)PTSLVHPVMSTLPELSCK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSPTSLVHPVMSTLPELSCK 20 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 LS(0.883)PT(0.104)S(0.013)LVHPVMSTLPELSCK 200.17 8.9174e-22 894580000.0 1768600.0 1662900.0 1495600.0 1379500.0 1367300.0 1826600.0 1603300.0 1543900.0 1991800.0 1653600.0 True False 1759078.0541099338 1718248.6212557235 1706167.480011759 1554144.5585566768 1541417.550377967 1700331.4413538992 1525742.2537992192 1659113.6577653468 1500947.5787525976 1548065.832281815 1.1363070080276183 1.1099325270444493 1.102128504119819 1.003926658768705 0.995705426884819 1.0983586136305639 0.9855796969243283 1.0717332707484732 0.9695631461229488 1.0 20.562035393446696 3.843769356283571 4.4941126603752455 1.0242054161414613 1.1192183339450725 0.5816341512560645 0.0380950660816578 0.1621190651161779 5.390705397817841 0.009445223961257238 0.01769416723057896 6978.616875062539 -3.843769356283571 0.09501291780361121 LS(ph)SESHHGGSPIHWVLPAGMSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSESHHGGSPIHWVLPAGMSAK 23 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 1 LS(0.284)S(0.284)ES(0.246)HHGGS(0.185)PIHWVLPAGMSAK 83.213 0.0035411 129710000.0 38242.0 57622.0 64246.0 65763.0 82120.0 63649.0 74008.0 40097.0 67544.0 68091.0 True False 38036.10932108562 59539.91343676544 73291.27836375737 74088.58905716764 92577.49523662588 59249.0944436298 70427.95030198504 43089.241748440414 50898.68624323001 63745.37408436208 0.5966881498059414 0.9340272026322877 1.1497505413767284 1.1622582833872324 1.4523013876129538 0.9294650050248069 1.10483233197093 0.6759587243368457 0.7984687041897273 1.0 15.960033030890383 1.749516198267563 24.999999999998806 0.7989520695481288 1.0621452367266735 0.1731886997125731 0.2186224565924064 4.505400534832784 10300.181368347696 0.10475065407670298 0.05808983357605847 56.17152287574237 -1.749516198267563 0.2631931671785447 LS(ph)SGFDDIDLPSAVK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSGFDDIDLPSAVK 15 0 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 LS(0.5)S(0.5)GFDDIDLPSAVK;LS(0.998)S(0.002)GFDDIDLPSAVK;LS(0.5)S(0.5)GFDDIDLPSAVK;LS(0.894)S(0.106)GFDDIDLPSAVK 220.21 1.7839e-12 152279000.0 334038.0 252265.0 227469.0 252311.0 265817.0 375237.0 358222.0 353799.0 504263.0 375303.0 True False 332239.57652311056 260661.48802758704 259494.65800400826 284253.5467299703 299667.2193292034 349297.7494028861 340893.4333190697 380201.2779349191 379994.14042801555 351350.841226936 0.9456063214845654 0.7418837738294382 0.7385627912483117 0.8090304999337461 0.8529002471795695 0.9941565763244499 0.9702365650489165 1.0821129006187542 1.0815233545508405 1.0 18.42255282719659 2.6744933800057122 1.4768036065281755 1.0504215437008864 0.7962756700258091 0.7449444591818905 0.06162296016110096 0.18666168369998037 0.8222186301985352 0.026588290929669158 0.024110303139080805 472.59963295989184 -2.6744933800057122 -0.25414587367507724 LS(ph)SGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 LS(0.995)S(0.005)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 377.64 7.118699999999995e-149 767230000.0 81126.0 94133.0 95677.0 89009.0 86540.0 126340.0 124300.0 94237.0 111940.0 116090.0 True False 80689.22662994587 97266.16000039979 109147.4899606079 100277.53027370153 97560.35603723346 117606.41317237019 118287.13412788817 101269.44346578998 84353.8869191514 108681.03681035062 0.7424407145723986 0.8949690107403936 1.004291946083209 0.9226773429543805 0.8976759782617565 1.082124505101975 1.08838798008801 0.9318041715272377 0.7761601231901172 1.0 16.7297407083962 4.659228767747818 2.7138318239680363 0.9657228292152654 0.7185774261455158 0.3710843809273817 0.08674941088485033 0.4024613106426416 4.403565710667847 0.022276458249856402 0.2037829352350384 45627.71999630336 -4.659228767747818 -0.24714540306974964 LS(ph)SLRAS(ph)TSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 LS(0.5)S(0.5)LRAS(0.84)T(0.137)S(0.023)K 114.31 0.00078097 1072800000.0 3483500.0 2084900.0 1882600.0 1854900.0 1762000.0 2692000.0 2406500.0 2526700.0 3907400.0 2656400.0 True False 3464745.223053238 2154294.6361513357 2147653.7161474605 2089730.149812818 1986380.2558077779 2505908.376286374 2290088.4012772515 2715255.1843226277 2944473.626477512 2486866.277741542 1.3932173410625683 0.8662687879252468 0.8635983910232041 0.8403066013306575 0.798748317746991 1.0076570657277661 0.9208731574248555 1.091838032718228 1.184009632054502 1.0 21.245897503245764 1.6825960941662788 5.052524140781639 1.106337391921154 0.9403270895326926 0.11992787954097861 0.16400095657545716 0.27916099369164965 16.338342383227047 0.08643234092390215 0.04217446500254858 48.149978126092876 -1.6825960941662788 -0.16601030238846148 LS(ph)SPGPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSPGPSR 8 0 Q86VQ6;H0YBI6;H0YBQ0 Q86VQ6 TXNRD3 Thioredoxin reductase 3 1 LS(0.577)S(0.423)PGPSR 63.816 0.074391 348770000.0 716500.0 715990.0 608760.0 634590.0 664110.0 688770.0 697040.0 681070.0 945150.0 720390.0 True False 712642.443610634 739821.2943249049 694468.1165632253 714929.0289340209 748680.4720116362 641156.9510901814 663321.5122486176 731894.9018033847 712230.4468611407 674414.093443092 1.056683794925421 1.09698373969009 1.0297354745624479 1.0600742717046254 1.110119849645181 0.9506873556228301 0.9835522695887874 1.0852307342315985 1.0560728991071118 1.0 19.36327515948313 2.767522440032467 24.996076054154578 1.0230574660233134 1.0693102633490834 0.3094285820758089 0.04065392877446901 1152.564868125763 994741.8894368182 0.01342803732243256 0.014240191427382186 585.4939880627034 -2.767522440032467 0.046252797325770034 LS(ph)SPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSPVK 6 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 LS(0.586)S(0.414)PVK 107.9 0.032388 1759500000.0 2987300.0 2190600.0 2011600.0 1674500.0 1621300.0 2167500.0 2992600.0 2372800.0 3668600.0 2787900.0 True False 2971216.708720228 2263512.796754335 2294815.794859358 1886491.5283096456 1827762.944802015 2017665.8267461783 2847836.5051578237 2549870.3848342625 2764522.686721448 2609973.835158728 1.1384086187743452 0.8672549763766798 0.8792485824746962 0.722800934973709 0.7002993364072778 0.7730597907022589 1.0911360362295086 0.9769716272574012 1.0592147129909142 1.0 21.315603913254982 2.2387116125675273 24.999999991431874 1.0264260247165897 0.8369463824611808 0.37145209773272225 0.11737856308497603 4.570189345303965 756824.8235653333 0.044682902143435524 0.0351994760236015 173.26530706083366 -2.2387116125675273 -0.18947964225540892 LS(ph)SPVLHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSSPVLHR 8 0 Q16643;Q16643-3;Q16643-2;D6R9W4;D6RCR4 Q16643 DBN1 Drebrin 1 LS(0.5)S(0.5)PVLHR;LS(0.5)S(0.5)PVLHR;LS(0.634)S(0.366)PVLHR 130.66 0.00066895 354427000.0 119390.5 156990.0 140036.0 143182.0 133732.0 150219.0 136278.3 132672.0 141207.9 130596.0 True False 118747.71481353142 162215.31724754078 159751.85158526787 161308.8265192189 150761.9775083349 139834.71410749 129685.99799533856 142572.65833476515 106409.10513391846 122261.2514711391 0.9712620587853456 1.3267925470714914 1.3066433531721109 1.3193781723827467 1.2331133183592815 1.143736976555481 1.060728533651172 1.1661311872668074 0.8703420245868931 1.0 16.899607714212863 1.8445602717383927 0.924761908523573 0.9658188477147579 1.242640185142212 0.4340436529636301 0.1144081973013676 0.5211191307694777 0.8256396701793086 0.09721496694064152 0.04288888655954498 69.91337563760487 -1.8445602717383927 0.2768213374274541 LS(ph)TGSFPEDLLESDSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTGSFPEDLLESDSSR 17 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 LS(0.771)T(0.115)GS(0.115)FPEDLLESDSSR 61.097 0.053936000000000005 0.0 13271.0 12370.0 9099.0 8515.8 12682.0 15573.0 13906.0 12260.0 18415.0 12669.0 True False 13199.550410546717 12781.727972177094 10380.060110074215 9593.899406855358 14296.977527896863 14496.475164898859 13233.313653921248 13174.903455018559 13876.869998357812 11860.453573523408 1.112904353001527 1.0776761523446527 0.8751823904311773 0.8088981882001736 1.205432611768964 1.2222530171409256 1.115751060605518 1.1108262743365442 1.1700117463750068 1.0 13.533871562768981 3.2161528905951973 24.99991257247568 1.142989531569294 0.969774317078005 0.4049664433582485 0.10004615472983866 240.91217856335035 268780.92010901024 0.030515576975412663 0.03649868177770836 1644.9507156742413 -3.2161528905951973 -0.17321521449128896 LS(ph)TPQKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTPQKK 7 1 B5MC51;P53671-3;F5GXC4;F5H2U0;Q96C90 B5MC51;Q96C90 LIMK2;PPP1R14B LIM domain kinase 2;Protein phosphatase 1 regulatory subunit 14B 1 LS(0.5)T(0.5)PQKK 70.908 0.034149 3518300000.0 3956800.0 2602400.0 2151200.0 1921400.0 1783200.0 2914100.0 3592500.0 3141000.0 5575000.0 3990000.0 True False 3935497.0284418077 2689019.310815977 2454070.261434403 2164649.042994418 2010279.950145534 2712655.126053541 3418717.0503172767 3375397.369674818 4201115.951172671 3735354.783989139 1.0535805180569564 0.7198832417048917 0.6569845177634239 0.5795029302899846 0.5381764427738437 0.7262108375035222 0.9152322196999687 0.9036350132369736 1.1246899408805626 1.0 21.83281384601832 1.9291479221179408 1.625467652247064 1.0314342229511946 0.6960423818355577 0.488845828289053 0.1390913969707392 0.331135454499698 1.6304631459756642 0.09798427537006331 0.04513263010661159 84.9469757940131 -1.9291479221179408 -0.3353918411156369 LS(ph)YASAESLETMSEAELPLGFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSYASAESLETMSEAELPLGFSR 23 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LS(0.377)Y(0.294)AS(0.294)AES(0.036)LETMSEAELPLGFSR 154.19 2.7416e-08 35963000.0 18977.0 23230.0 19046.0 22596.0 20449.0 21142.0 21756.0 19570.0 24549.0 19633.0 True False 18874.829940542906 24003.196507168454 21727.511249200303 25456.651283179934 23053.058939281076 19680.503302914767 20703.579164009116 21030.412774446424 18499.227889746737 18380.005131343052 1.0269219081095924 1.305940685850859 1.1821275943034866 1.3850187255807247 1.254246599744913 1.0707561375678836 1.1264185736653425 1.1442005932078705 1.0064865465244281 1.0 14.165849548949092 2.739569519525741 24.96997800728847 1.0885397132066148 1.2408807568007503 0.40063675150046996 0.09687038772131748 95.35271769008482 2359973.307252293 0.029635651814106444 0.029876144761925138 548.9964289704583 -2.739569519525741 0.15234104359413547 LS(ph)YSDKNLIDSMDQSAFAGFSFVNPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSYSDKNLIDSMDQSAFAGFSFVNPK 26 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 LS(0.879)YS(0.121)DKNLIDSMDQSAFAGFSFVNPK;LS(1)YSDKNLIDSMDQSAFAGFSFVNPK 395.48 1.7979999999999986e-145 611620000.0 772700.0 528170.0 460820.0 428870.0 413090.0 664460.0 616130.0 634700.0 1036200.0 725110.0 True False 768539.8690550401 545749.8191644929 525699.4504807563 483164.89802696777 465694.5629237434 618527.4441705964 586325.4380548329 682064.5369412951 780842.3943686328 678832.8590020966 1.1321488918270917 0.8039531556659771 0.7744166233401685 0.7117582651158546 0.6860224232638465 0.9111630881861689 0.8637257762046873 1.004760638640783 1.1502719469362357 1.0 19.37269687486839 1.718705152204208 2.021721310517812 1.0793258205848275 0.8208553478270872 0.39013224396406254 0.12224044172843063 0.2960601283829559 2.496148156976427 0.08738834872228629 0.035680448616227954 52.32450785353097 -1.718705152204208 -0.25847047275774027 LSAEERDQLLPNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSAEERDQLLPNLR 14 1 P61457 P61457 PCBD1 Pterin-4-alpha-carbinolamine dehydratase 0 ; 204.35 1.2557e-08 484600000.0 205561.0 191450.0 238480.0 245113.0 183778.0 265360.0 223140.0 199007.0 188869.0 233475.0 False True 204454.2824159739 197822.29751603122 272055.91109468054 276144.2806679979 207181.03896245302 247016.28779024986 212345.86572242103 213857.9128770699 142324.76566493855 218574.4256119962 0.9353989234720087 0.9050569249450836 1.2446831798044953 1.263387882158717 0.9478741091614797 1.1301243825695437 0.9715037115063414 0.9784214794492981 0.6511501300595307 1.0 17.737765082211585 1.5764648196790993 2.623982862614498 0.8264923606629544 1.067347265927519 0.2771791065827528 0.14352276519357302 0.29803176070227655 4.601445471813318 0.10360519973589462 0.03903846843626136 37.71071959483174 -1.5764648196790993 0.24085490526456454 LSAEKVEIATLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSAEKVEIATLTR 13 1 P25789;H0YN18;P25789-2;H0YMZ1;H0YL69 P25789 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type 0 ; 165.34 3.237e-05 1845400000.0 1058680.0 1364130.0 1290940.0 1350400.0 1251570.0 1413070.0 1597890.0 1377410.0 1919980.0 1574920.0 False True 1052980.1845104066 1409534.242416003 1472693.1309483694 1521360.5015403677 1410950.0208634168 1315387.796908984 1520593.9561674274 1480199.3285462577 1446826.6554139052 1474407.257243151 0.7141718676014052 0.9560006134611357 0.9988374132816012 1.0318455054168751 0.956960849135817 0.892146854572934 1.0313256047115749 1.0039284066696312 0.9812937696191104 1.0 20.491703646574006 4.73895338562817 3.5738625190360263 0.9873051489658144 0.682313077195611 0.82002983347401 0.03810727919586024 0.11596359137867678 2.6564039654918252 0.009683508198144213 0.09505122710013664 54821.811956170364 -4.73895338562817 -0.3049920717702035 LSAITMALQYGSES(ph)EEDAALAAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSAITMALQYGSESEEDAALAAAR 24 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 LSAITMALQY(0.011)GS(0.426)ES(0.563)EEDAALAAAR 92.336 0.0055747 26680000.0 18955.0 20477.0 16494.0 17753.0 19442.0 22227.0 18453.0 18443.0 28438.0 25511.0 True False 18852.94838609849 21158.564566392113 18816.211831581957 20000.527979743896 21917.823458237697 20690.499806730044 17560.35789269443 19819.310311656394 21429.83594967688 23882.866138934074 0.7893922059615883 0.8859307104644036 0.7878540089000285 0.8374425357239199 0.9177216557985498 0.8663323608802629 0.735270121707351 0.8298547668592744 0.8972891203682525 1.0 14.543688361725954 0.9525097843322863 3.211090729410586 0.9995522373298179 0.8313666012484954 0.5255322660238094 0.04963321706344757 0.21417363959587385 5.557375807537687 0.04839597617340191 0.012625255478630715 8.964163813180877 -0.9525097843322863 -0.16818563608132253 LSAIYGGTYMLNKPIEEIIVQNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSAIYGGTYMLNKPIEEIIVQNGK 24 1 P50395;P50395-2;Q5SX87;Q5SX91 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ; 305.12 1.1788999999999999e-62 684860000.0 595280.0 523230.0 573170.0 533660.0 538380.0 686110.0 677700.0 621580.0 924010.0 654970.0 False True 592075.0786218254 540645.3942507852 653867.3539170502 601221.3012826081 606939.5017717318 638680.8306292141 644917.0619345908 667965.4559192861 696300.1165996535 613169.2538519707 0.965598119772591 0.8817229351511257 1.0663733541912144 0.9805144297527889 0.9898400775298123 1.0416060926358879 1.0517765818869396 1.0893655409547722 1.1355757194697045 1.0 19.225925832184686 3.2537786789301175 0.6137060800833042 1.0826594918499366 0.9337457291759036 0.42725500704791075 0.051742413841048204 0.8328019272210885 0.6562706127153468 0.03454565483754029 0.06873804413279122 1793.8192445680327 -3.2537786789301175 -0.148913762674033 LSAKPAPPKPEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSAKPAPPKPEPK 13 2 Q15651;A0A087WZE9;Q15651-2;P05204 Q15651;P05204 HMGN3;HMGN2 High mobility group nucleosome-binding domain-containing protein 3;Non-histone chromosomal protein HMG-17 0 ; 123.38 0.00012601 16909300000.0 7950600.0 7830900.0 7543400.0 6534700.0 7191100.0 11709400.0 10338800.0 10175000.0 16413300.0 10739100.0 False True 7907794.852994694 8091546.772620982 8605445.151591808 7361992.349982122 8106843.960010963 10899956.738962725 9838672.745948583 10934310.167603083 12368462.141952023 10053721.44379392 0.7865540036297813 0.8048310088813756 0.8559462483321415 0.7322653995478081 0.8063525536621318 1.084171348878099 0.9786100401679534 1.0875883351982805 1.2302372023234214 1.0 23.26122628648314 2.745080402892882 9.618826632839152 1.07388494922202 0.7971511246160823 0.8047116277509472 0.06870041183178464 0.07552082158213227 91.86258920519388 0.0215731821814257 0.021932039102362324 556.0071838558945 -2.745080402892882 -0.27673382460593765 LSAKPAPPKPEPKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSAKPAPPKPEPKPK 15 3 P05204 P05204 HMGN2 Non-histone chromosomal protein HMG-17 0 101.67 0.00073684 3253700000.0 3922600.0 4017300.0 3816700.0 4152300.0 3327000.0 5216200.0 5587400.0 4968400.0 9654400.0 5796300.0 False True 3901481.1574418326 4151013.4019908663 4354058.184648887 4677980.754255092 3750673.7293260377 4855616.371614032 5317116.116059231 5339167.237024001 7275202.482332109 5426375.171537901 0.7189847797302421 0.7649698501798242 0.8023879748467325 0.8620820725392813 0.6911932202916686 0.8948176670648247 0.9798651858699801 0.9839288785317833 1.3407112948053364 1.0 22.371557366189418 1.9865884693178475 1.2449209665710725 1.1417958665759647 0.774844142834651 0.6897056050992669 0.10012642283421742 0.2533124384870847 0.7269568606055365 0.07106501135156992 0.03276604870638215 96.95907627075906 -1.9865884693178475 -0.3669517237413137 LSAKPPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSAKPPAK 8 1 P05114;A6NEL0;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 66.27 0.076908 0.0 1442300.0 1553700.0 1471000.0 1306600.0 1369200.0 1782700.0 1661900.0 1576600.0 2423000.0 1675200.0 False True 1434534.8170545946 1605413.9652685155 1678104.0138387934 1472015.4260312822 1543559.5041157836 1659466.1450244149 1581507.547925481 1694253.8978125842 1825884.116536574 1568287.3017891252 0.9147142971941788 1.0236733814250971 1.0700233381500874 0.9386133678134009 0.9842326099018134 1.0581391197462808 1.0084297348587048 1.08032112220749 1.1642535869885438 1.0 20.580758446952057 2.0496299642749474 1.4114164872348098 1.0885589821300614 0.993989343044489 0.2936985804410964 0.05808033152014196 0.5191975414164993 1.9379686871895851 0.03832398559323225 0.01890336596787111 112.10628582672211 -2.0496299642749474 -0.09456963908557237 LSALGNVTTCNDYVALVHPDLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LSALGNVTTCNDYVALVHPDLDR 23 0 P56537 P56537 EIF6 Eukaryotic translation initiation factor 6 0 ;;;; 266.38 3.9818e-44 6052050000.0 2327537.0 2909538.0 2557005.0 2367597.0 2697013.0 2637269.0 2560893.0 2491855.0 2850920.0 2779963.0 False True 2315005.79940567 3006380.2134771403 2917009.0781141166 2667334.5374448113 3040461.619101536 2454960.801493462 2437012.822028717 2677809.873483304 2148348.966370799 2602543.3812939352 0.8895166997196 1.155170067513889 1.1208301460334678 1.0248953222515211 1.1682654901951628 0.9432929414889916 0.936396618609708 1.028920360263869 0.8254805594451535 1.0 21.311490781054825 2.7104637734519668 24.544651026318608 0.9543981611972334 1.0764960466328772 0.32856713876782284 0.08882616607957738 683.7417622558373 597297.547582634 0.027447605506852848 0.025883758605996426 513.4093498250065 -2.7104637734519668 0.12209788543564382 LSALGNVTTCNDYVALVHPDLDRETEEILADVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSALGNVTTCNDYVALVHPDLDRETEEILADVLK 34 1 P56537 P56537 EIF6 Eukaryotic translation initiation factor 6 0 302.54 2.0557999999999996e-90 126730000.0 54524.0 54200.0 51607.0 52830.0 49236.0 58453.0 64313.0 55195.0 87013.0 63871.0 False True 54230.4488421859 56004.01423540811 58872.817023914744 59518.2725832181 55505.91275536426 54412.2816935615 61201.93449048158 59313.93117453094 65569.81206446416 59794.69809728576 0.9069441032038185 0.9366050171252606 0.9845825616199095 0.9953770898948614 0.9282748223773343 0.9099850559498254 1.0235344677366922 0.9919597064948366 1.0965823752096266 1.0 15.867729948122381 2.220347310407722 24.908152341941978 1.023421189572753 0.9468247969636184 0.5463693280567343 0.03751014120198855 203.9065369662903 278856.59839910455 0.014504367003145564 0.010733105125994888 166.09146294432603 -2.220347310407722 -0.07659639260913453 LSAQAQVAEDILDKYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSAQAQVAEDILDKYR 16 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 137.45 1.0896e-05 545710000.0 103530.0 148780.0 130210.0 142850.0 145510.0 135620.0 157380.0 113590.0 167210.0 155350.0 False True 102972.6059832643 153732.0523605906 148542.4361943911 160934.7953532597 164039.83599465934 126244.90861514061 149766.9281500164 122066.66259833281 126003.33599920775 145435.4299981736 0.708029714523878 1.0570467757582949 1.0213634751604648 1.1065721423952934 1.1279221025902655 0.8680478245000273 1.0297829638341716 0.8393186075763364 0.8663867944749784 1.0 17.15001924614309 2.1057178863876103 1.748185617532383 0.8953497182284244 1.0054264399932424 0.05555262219956014 0.12466163980424208 0.8008321856676959 4.692098804734186 0.07123367671378084 0.03910579696546897 127.56099154115094 -2.1057178863876103 0.11007672176481809 LSAS(ph)SEDISER ddPTM_BT-474_Trastuzumab_2h_R1 2 LSASSEDISER 11 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 LSAS(0.5)S(0.5)EDISER;LSAS(0.944)S(0.056)EDISER 264.96 6.9025e-21 785660000.0 777050.0 866940.0 793550.0 847460.0 854110.0 847030.0 843520.0 805010.0 970320.0 950780.0 True False 772866.4491383706 895795.5738237029 905274.9423397505 954748.3491079677 962875.8457934071 788476.8097941485 802715.7150406762 865083.9339579525 731197.6376218594 890100.4063962887 0.8682913113897361 1.0063983426886323 1.0170481170825416 1.0726299440457694 1.081760932670238 0.8858290639214746 0.9018260291449556 0.9718947747258995 0.8214777033775639 1.0 19.763608560672672 2.724434642538914 24.903017473883118 0.91808659249152 1.0130256885289344 0.30310663763674617 0.07037663461979375 960.5545743772923 1693382.626477768 0.022882846869882352 0.021672012746896733 530.1937971690844 -2.724434642538914 0.09493909603741435 LSCS(ph)LEDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LSCSLEDLR 9 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YDJ2;E9PI79 E9PP16 PPFIBP2 Liprin-beta-2 1 LS(0.001)CS(0.999)LEDLR;LS(0.007)CS(0.993)LEDLR;LS(0.001)CS(0.999)LEDLR;LSCS(1)LEDLR;LS(0.007)CS(0.993)LEDLR;LS(0.004)CS(0.996)LEDLR 147.83 9.5952e-05 12474610000.0 13375030.0 15467660.0 13780990.0 13266500.0 13322460.0 14352650.0 14320310.0 13594440.0 15836170.0 14089330.0 True False 13303020.324585533 15982491.712702079 15721233.60548759 14946037.53975511 15018996.312593026 13360485.088003945 13627581.896403357 14608926.143967573 11933558.097306212 13190136.89691772 1.00855816952849 1.2117002149111036 1.1918931341160939 1.133122245550591 1.138653558334385 1.012914816003618 1.0331645534010994 1.1075644065060004 0.9047334527737051 1.0 23.65295620222627 2.7451784396879746 22.36295072196876 1.0274327533976626 1.1438054480675475 0.4404263043121345 0.06915707141828552 124.94687462913012 422219.6464177163 0.02114449979452052 0.021887582326995007 556.132710008044 -2.7451784396879746 0.11637269466988487 LSCS(ph)LEDLRSESVDK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSCSLEDLRSESVDK 15 1 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YDJ2;E9PI79 E9PP16 PPFIBP2 Liprin-beta-2 1 LS(0.055)CS(0.945)LEDLRSESVDK;LS(0.12)CS(0.88)LEDLRSESVDK;LSCS(1)LEDLRSESVDK;LS(0.126)CS(0.874)LEDLRSESVDK 200.6 4.1386000000000006e-09 1656800000.0 2011960.0 2166680.0 1997420.0 2269490.0 1986410.0 2426790.0 2608490.0 2263290.0 3573400.0 2615030.0 True False 2001127.8309097702 2238796.634014282 2278639.374114128 2556807.2013039463 2239367.539125501 2259031.719349186 2482307.3733005174 2432188.1925537465 2692783.451106807 2448136.5465601776 0.817408585203922 0.9144900994840199 0.9307648208249631 1.044389131356443 0.9147232993486359 0.9227556046754424 1.0139578924992367 0.9934855128776049 1.0999318869245172 1.0 21.223252596942707 6.768122088993789 0.38266143968913435 1.0154652477421782 6.931058376617444e-18 0.5664757539201652 0.05047210803408125 21.048986169417958 0.6972037497979054 0.03911183008660943 13.531404903969674 5863029.630120049 -6.768122088993789 -1.0154652477421782 LSDDFDS(ph)PVKGPLCK ddPTM_BT-474_Trastuzumab_2h_R1 3 LSDDFDSPVKGPLCK 15 1 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 LSDDFDS(1)PVKGPLCK;LSDDFDS(1)PVKGPLCK;LSDDFDS(1)PVKGPLCK 193.06 6.562e-08 926250000.0 1512290.0 986600.0 817290.0 694610.0 720310.0 1404540.0 1336770.0 1171710.0 2310430.0 1544500.0 True False 1504147.9986712146 1019438.3845877068 932357.3279879728 782547.5547800324 812037.208888139 1307447.4557315249 1272105.3281426951 1259148.9500228239 1741055.484675852 1445928.6876870228 1.040264303129169 0.7050405689221434 0.6448155679651231 0.5412075722986264 0.5616025297811283 0.9042267899276422 0.879784279111037 0.8708236863582942 1.204108819129198 1.0 20.463564970536247 1.8770305389954072 1.155835724394976 1.0680296756083112 0.7009371804576027 0.45189643319723094 0.15312705752323116 0.44894581400450134 1.1066736232996568 0.12707026917613967 0.05426751473872618 75.34085405316716 -1.8770305389954072 -0.3670924951507085 LSDEHEPEQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSDEHEPEQR 10 0 Q9UK59;Q9UK59-2 Q9UK59 DBR1 Lariat debranching enzyme 0 ;; 103.22 0.0028432 591930000.0 745150.0 952640.0 865330.0 913550.0 865750.0 866790.0 887140.0 778650.0 930720.0 920770.0 False True 741138.1951939474 984348.0465169589 987160.9424168062 1029205.3363316072 975998.1307977211 806870.8475041846 844225.6489960959 836756.816904584 701356.5270090459 862005.6702891436 0.8597834338437085 1.14192757709677 1.1451907759326938 1.19396585406031 1.132240963647421 0.9360389093885368 0.9793736608634097 0.9707091794696775 0.8136333102934104 1.0 19.717337833856895 2.7344939601490332 24.628017685721076 0.9441721378764598 1.1055783372260892 0.3861068293846236 0.09695124880036592 294.33210471188687 1782492.9793258642 0.030927832649186308 0.030138656879426965 542.6177049451762 -2.7344939601490332 0.1614061993496294 LSDETLIDIMTR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSDETLIDIMTR 12 0 P19367-4;P19367-2;P19367;P19367-3;B1AR62 P19367-4 HK1 Hexokinase-1 0 ;;; 255.19 9.1534e-21 278657000.0 386594.0 525945.0 427103.0 467840.0 462343.0 503808.0 447986.0 419136.0 494287.0 446926.0 False True 384512.62085863086 543450.7613845336 487235.3899541741 527068.4960312844 521219.64052834036 468980.9387964658 426315.2057072891 450414.0566494826 372476.59195646463 418402.80004740064 0.9190010698185328 1.298869800400395 1.1645127372450077 1.2597155085280813 1.2457365019289823 1.1208838438541406 1.0189109768361782 1.0765082274747095 0.8902344628531811 1.0 18.67453298089973 2.336615250106136 2.630711104304615 1.0065955347304025 1.188447496168261 0.3899484829604274 0.10617267401684832 0.2860319826062999 4.050324588931312 0.04117908488447675 0.031674687109459344 217.07771931777884 -2.336615250106136 0.18185196143785842 LSDFLITGGGKGS(ph)GFSLDVIDGPISQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSDFLITGGGKGSGFSLDVIDGPISQR 27 1 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 LSDFLIT(0.001)GGGKGS(0.999)GFSLDVIDGPISQR;LSDFLITGGGKGS(0.999)GFS(0.001)LDVIDGPISQR 278.63 3.3008e-61 629390000.0 1041530.0 898830.0 842700.0 792490.0 849050.0 1124170.0 1017580.0 978820.0 1489100.0 1115350.0 True False 1035922.5182048612 928747.0131957904 961344.8351202923 892819.1527441697 957171.4847863765 1046458.7739115347 968355.7678669052 1051864.5187472482 1122131.2579177085 1044167.4081008241 0.9921038620512403 0.8894617912706495 0.9206807525900726 0.855053649268815 0.9166839314850102 1.0021944429532408 0.9273951287449124 1.0073715293033556 1.0746660441726374 1.0 19.993921602568033 1.9490264796985415 1.082640700199074 1.0362273024187811 0.9146477662606545 0.5018912369363551 0.04478010372523159 0.40344756696931394 0.8697025536553347 0.03539223056985551 0.01595250952350579 88.92553356671841 -1.9490264796985415 -0.12157953615812667 LSDLDSETR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSDLDSETR 9 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 ; 146.03 0.00022277 872030000.0 2372400.0 2310290.0 2125950.0 2087630.0 2046340.0 2539750.0 2393800.0 2237550.0 3330830.0 2571940.0 False True 2359627.261998422 2387186.606050201 2425265.2809113376 2351923.7439504755 2306929.26939256 2364183.060428425 2278002.748795966 2404527.3430486773 2509991.577335332 2407796.5872513824 0.979994437442098 0.9914403146385765 1.0072550537501577 0.9767950317743873 0.9581080401920631 0.9818865401446788 0.946094350684506 0.9986422257511225 1.0424433652846938 1.0 21.199282086438682 1.4751058630536844 6.944025939913974 1.021264348875126 0.9781456976362551 0.4791681224556287 0.018370934741358983 0.108711582102594 13.944862179772855 0.010658116173507187 0.0047044678665800884 29.861104205726285 -1.4751058630536844 -0.04311865123887093 LSDNPAWEGDKGNTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSDNPAWEGDKGNTK 15 1 Q9BY42;A2A2L6;A2A2L5;A0A0A0MQR2 Q9BY42 RTFDC1 Protein RTF2 homolog 0 ; 121.27 0.00010587 1051090000.0 1180450.0 1019090.0 946890.0 952020.0 1026460.0 1276380.0 1364840.0 1199120.0 1468140.0 1444260.0 False True 1174094.5883603238 1053009.794597085 1080203.8814845767 1072545.634387191 1157173.5966949216 1188146.8548753352 1298817.4750048823 1288604.423407983 1106336.5690680982 1352086.090306806 0.8683578632880592 0.7788038070550253 0.7989164959455093 0.7932524726615717 0.855843133799523 0.8787508897497268 0.960602645287301 0.9530490940229863 0.8182441761656286 1.0 20.366755583447603 2.7329016478621924 1.901814789335073 0.9317387515268075 0.8079375347328612 0.5398027218967899 0.04995222024511947 0.25095919290440694 1.796946053025442 0.018235960251958082 0.017860481581811666 540.6318753341401 -2.7329016478621924 -0.12380121679394629 LSDPPTSPSS(ph)PSQMMPHVQTHF ddPTM_BT-474_Trastuzumab_2h_R1 3 LSDPPTSPSSPSQMMPHVQTHF 22 0 Q13496-2;Q13496 Q13496-2 MTM1 Myotubularin 1 LSDPPTSPS(0.062)S(0.936)PS(0.002)QMMPHVQTHF;LSDPPTS(0.001)PS(0.028)S(0.971)PSQMMPHVQTHF;LSDPPTS(0.002)PS(0.032)S(0.961)PS(0.004)QMMPHVQTHF 208.12 4.6842e-23 1421370000.0 641980.0 842600.0 732700.0 823370.0 783910.0 706860.0 770070.0 395032.0 698380.0 619310.0 True False 638523.651010684 870645.4316375448 835857.7912574321 927608.5575779723 883736.2919014064 657996.4319694607 732818.7721469256 424511.2937718505 526273.6068125515 579785.105582033 1.1013108906440165 1.5016691930426942 1.441668271933846 1.5999178810341588 1.5242480073961948 1.1348970948622645 1.263948944344242 0.7321873047181736 0.9077045990759584 1.0 19.145158746127006 2.139565016845688 1.6286455726389857 0.8629898360451825 1.435812825961183 0.6463334490567403 0.16529242259519636 0.2137170691153704 1.0930988030302047 0.095114786158494 0.052778001229054294 137.90023835776066 -2.139565016845688 0.5728229899160006 LSDQFHDILIR ddPTM_BT-474_Trastuzumab_2h_R1 8 LSDQFHDILIR 11 0 O75340-2;O75340;A0A024QZ42;H0Y9X3;A0A087WZ38 O75340-2 PDCD6 Programmed cell death protein 6 0 ;;;;;;; 225.79 5.2158e-12 23879090000.0 10136510.0 13542140.0 11835120.0 12612990.0 12322360.0 12832430.0 13126220.0 11802760.0 13868680.0 13374610.0 False True 10081936.156432133 13992881.943503516 13501402.02329285 14209793.240760984 13891539.505650125 11945354.318390999 12491254.591570133 12683541.884400895 10450929.644790938 12521030.939220289 0.8052001632590772 1.1175503048772821 1.0782979523676197 1.1348740618674533 1.1094565274283381 0.95402322511431 0.997621893293396 1.0129790387045179 0.8346700599592752 1.0 23.577850017989096 2.723635579024062 24.358353790930273 0.9681534984178737 1.0592699647334247 0.1620187923611074 0.09922409444878474 1059.2773127683804 1728787.5070118825 0.03167324604105736 0.029974066637722955 529.2191842542568 -2.723635579024062 0.09111646631555104 LSDSFSLYPQFMFHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSDSFSLYPQFMFHLR 16 0 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 164.2 7.4618e-09 289010000.0 202020.0 306910.0 310890.0 309390.0 230610.0 276500.0 281590.0 211540.0 390840.0 275400.0 False True 200932.34676653214 317125.3138189873 354660.609695678 348558.74227752833 259976.81656744145 257386.2058109892 267968.4159217379 227326.18897835456 294522.7189876819 257823.73621819794 0.7793399851923709 1.2300082159642665 1.3755933216153782 1.3519265037046113 1.0083509780008049 0.9983029863207069 1.0393473457965656 0.8817116387839748 1.1423413658796153 1.0 17.976025564156213 3.137986846824368 9.778307187008979 0.9979090372428641 1.200951344707047 0.2053739314835482 0.16371029371324833 0.4352583476807033 38.74553897756353 0.04842880651644092 0.057934359308031855 1374.0003609867877 -3.137986846824368 0.20304230746418295 LSDSTTGADS(ph)LLDISSEADQQDLLSLLQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSDSTTGADSLLDISSEADQQDLLSLLQAK 30 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 LS(0.077)DS(0.23)T(0.23)T(0.201)GADS(0.262)LLDISSEADQQDLLSLLQAK 104.87 0.00021647 35374000.0 38580.0 30040.0 27950.0 25306.0 27697.0 37959.0 31088.0 31817.0 45634.0 32510.0 True False 38372.28956664094 31039.863240436523 31885.11705424488 28509.73700531736 31224.048777019325 35334.983675874624 29584.154672307195 34191.34610345233 34388.11216427155 30435.1839667887 1.2607871734408873 1.0198677712711597 1.0476400303358893 0.9367361484138748 1.0259195019518017 1.1609912959432955 0.9720379776442238 1.1234151283843858 1.1298802136959758 1.0 14.893452465824241 1.627795023812881 24.999999997958035 1.0949918613660754 1.05565977700595 0.007841676407993048 0.09358749692704756 3.4809260377977167 4355.560865734524 0.042380894253215166 0.023461810362025767 42.441920136648385 -1.627795023812881 -0.039332084360125474 LSDVDANTAIKHEEQSNEDIPIAEQSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSDVDANTAIKHEEQSNEDIPIAEQSSK 28 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 0 154.69 1.5192e-08 84349000.0 167100.0 138000.0 132850.0 130560.0 134100.0 188840.0 187860.0 162750.0 273290.0 191990.0 False True 166200.35216655515 142593.2465772383 151554.1252470995 147088.8826133817 151176.84012702783 175785.9352815451 178772.49410510896 174895.23142775448 205941.34139838233 179737.03382909155 0.9246861852888472 0.7933437174268015 0.8431992117507033 0.8183560142271272 0.8411001166892458 0.9780173375326563 0.9946336060886608 0.9730617430465607 1.145792478105586 1.0 17.455528173306206 2.624311151243734 2.3733687825694223 1.0202992532219748 0.8376682768314785 0.7248946916963505 0.054101378536238066 0.16076149561300385 1.782589562934415 0.019456028829496617 0.01797964288178679 421.0281669155411 -2.624311151243734 -0.1826309763904963 LSEAACEDEDSASEGLGELFLDGLSTENPHGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSEAACEDEDSASEGLGELFLDGLSTENPHGAR 33 0 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 0 151.35 1.8431e-10 30193000.0 13382.0 14418.0 13939.0 13073.0 14354.0 17218.0 16742.0 15985.0 18758.0 19617.0 False True 13309.952798879973 14897.894414134953 15901.490040040053 14728.040459595111 16181.896817176435 16027.760186812331 15932.12549934916 17177.881870185294 14135.342244322348 18365.02626504133 0.7247445555913022 0.811210079372104 0.8658571902131862 0.8019613066184724 0.8811257105566692 0.8727327669180581 0.8675253315415449 0.9353584156252572 0.7696881039168247 1.0 14.164673338914298 7.999999999989088 0.06049482461148046 1.1639800231497428 0.20826806338780854 0.5000827518843397 0.05370324172685481 271.0509872428735 1.2235629859417245 3.8839809189017207 22.778722639782362 99999999.99748738 -7.999999999989088 -0.9557119597619342 LSEAVWQPEEHYSS(ph)SPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSEAVWQPEEHYSSSPEK 18 0 Q9Y485;F5H269 Q9Y485 DMXL1 DmX-like protein 1 1 LSEAVWQPEEHYS(0.005)S(0.893)S(0.102)PEK 177.03 6.1781e-14 311040000.0 168700.0 178360.0 206410.0 220460.0 207940.0 278040.0 275650.0 239870.0 275750.0 266760.0 True False 167791.73794433218 184296.604779103 235470.7338521177 248370.21339572684 234419.926443059 258819.7492357589 262315.75641474104 257770.3174351799 207795.10736069354 249735.14841527367 0.6718787443780987 0.7379682273343608 0.9428818303964315 0.994534469704372 0.9386741431096128 1.0363769412440849 1.0503758004401833 1.0321747622266806 0.8320619211163666 1.0 17.93003935888203 4.256593552095789 2.571559598689359 0.9917263928590988 0.6756841611990598 0.7749877130596986 0.059672371701211736 0.1218997362025438 1.5764877374656359 0.015567845222486262 0.05363965782825481 18054.836174706623 -4.256593552095789 -0.316042231660039 LSEDYGVLK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSEDYGVLK 9 0 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 ;;; 151.04 0.00019499 806280000.0 1476670.0 1458920.0 1413650.0 1290110.0 1142540.0 1503430.0 1483010.0 1368990.0 2198610.0 1557080.0 False True 1468719.7727934606 1507479.2702642358 1612679.6323339278 1453437.7937220407 1288035.6966348588 1399501.4227935467 1411271.1406516428 1471150.9853903644 1656792.0253646201 1457705.8213167447 1.0075556750310342 1.0341450574043334 1.1063135021833113 0.9970720926456555 0.8836046874474145 0.9600712313334785 0.9681453692603371 1.0092235098996 1.1365750216103556 1.0 20.475268168996188 -0.793601673173737 9.143282985497638 1.0000000040757877 1.0073500514032843 0.0 0.06812138244019719 0.0 0.0 0.0687487652202709 0.01620423936181848 0.16084157857644357 0.793601673173737 0.007350047327496556 LSEEFLTAHPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSEEFLTAHPR 11 0 Q15813-2;Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8Y7E7;A0A2U3TZJ6;A0A2R8Y6Q1 Q15813-2 TBCE Tubulin-specific chaperone E 0 ; 225.22 5.6325e-12 568480000.0 164032.0 209646.0 191100.0 181739.0 182555.0 200197.0 186824.0 156254.0 232306.0 209882.0 False True 163148.86993766832 216623.94037631698 218005.21892902302 204747.1387658806 205802.2971617421 186357.85260304747 177786.60938301348 167914.46692173494 175057.29904091824 196487.15107097934 0.8303284415718978 1.1024840005851753 1.1095138676537197 1.042038309629302 1.0474084236042374 0.948448036359015 0.9048256255636256 0.8545824294692799 0.8909350972149841 1.0 17.58407544751985 2.5387293700650044 2.797043080970731 0.8960845113664327 1.0362333321478132 0.29829780538401696 0.08069444113761201 0.2807911121085477 4.355730852011756 0.02880206982396497 0.0255720428974465 345.7238733902401 -2.5387293700650044 0.14014882078138047 LSEELSGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSEELSGGR 9 0 B4DXW1;P61158;Q9P1U1-2;Q9P1U1 B4DXW1 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B 0 ; 187.3 9.4678e-05 439450000.0 292317.0 371540.0 344590.0 329680.0 327070.0 344230.0 349840.0 287129.0 373070.0 313388.0 False True 290743.1977514721 383906.4842993271 393105.27677002636 371417.4541971476 368720.425804228 320434.19033025944 332916.9026814186 308556.0239915191 281131.8973818818 293387.30953503447 0.9909876409182361 1.3085313230069462 1.3398850733967558 1.2659629170252005 1.2567701936003395 1.0921883118874138 1.1347351840440247 1.051702012880258 0.9582278723214877 1.0 18.162446943039004 2.081372736190806 1.0339228385689778 0.986643218472779 1.2429920801931384 0.5068598216447651 0.09494907309907595 0.4248531041338996 0.8432167600636545 0.07291461380698308 0.036283538391349915 120.60706146023152 -2.081372736190806 0.2563488617203594 LSEGFSIHTR ddPTM_BT-474_Trastuzumab_2h_R1 5 LSEGFSIHTR 10 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 ;;;; 215.56 8.130500000000001e-09 3899770000.0 1803582.0 3104470.0 3252070.0 3424500.0 3304820.0 3340640.0 3388840.0 3110000.0 3018530.0 3249620.0 False True 1793871.7149087978 3207800.4072582535 3709933.1885008286 3858041.3488781042 3725669.2377971974 3109709.419820695 3224908.862574028 3342083.992260011 2274653.72772973 3042226.469460347 0.5896575198844444 1.0544252505393779 1.2194796231455196 1.2681637569087592 1.2246521668250703 1.0221820929630918 1.0600489131718345 1.098565154767342 0.7476937534282991 1.0 21.536696123506232 -0.8942621728389983 7.153805079264817 0.999999999354027 1.0549998289433096 0.0 0.20377822064312737 0.0 4.069486933889272e-10 0.1953694435048548 0.04604901876012446 0.12756684868032586 0.8942621728389983 0.05499982958928262 LSEGS(ph)QPAEEEEDQETPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 LSEGS(1)QPAEEEEDQETPSR;LSEGS(1)QPAEEEEDQETPSR 419.52 5.311699999999998e-149 1542540000.0 634210.0 686200.0 606540.0 618590.0 654560.0 642530.0 675150.0 601800.0 639590.0 580310.0 True False 630795.4838273547 709039.7521833401 691935.55985981 696903.4305745388 737914.3361189218 598113.4134529292 642490.4151765375 646709.3718784811 481971.614566911 543274.1189716132 1.1610998238263484 1.305123375885293 1.2736398361284067 1.2827841530418143 1.3582725742867179 1.1009422178717507 1.182626583413793 1.190392380742644 0.8871610071896222 1.0 19.051320794553586 1.3442947833290608 3.9784522202963917 0.9442404956526675 1.2389141029449926 0.6958863120331507 0.07627600447786807 0.12215098522191674 3.059292848278977 0.0606254920824538 0.020030405254518966 22.095039552304904 -1.3442947833290608 0.29467360729232506 LSEHATAPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSEHATAPTR 10 0 P33316-2;H0YNJ9;H0YNW5;P33316;A0A0C4DGL3;H0YKC5;H0YMM5;H0YKI0 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 0 ;;; 166.86 5.4176e-06 1817750000.0 907780.0 1335380.0 1460140.0 1425800.0 1293700.0 1469890.0 1529230.0 1261610.0 1606840.0 1428680.0 False True 902892.6133438403 1379827.3160457432 1665715.0202356065 1606306.1338094324 1458445.0266393444 1368279.9640488767 1455255.302674097 1355757.7445257737 1210855.812552879 1337500.4192455134 0.6750596862266136 1.0316462680618124 1.2453940172783196 1.2009761721910732 1.09042584634258 1.0230127365647677 1.0880410067422703 1.0136503323793793 0.9053124732745319 1.0 20.35110791305727 -0.6123603815059898 7.58632411809488 0.9999825455205434 1.0438388332967918 0.0 0.15037358809500237 0.0 0.0 0.14640462118102876 0.03450789988761381 0.24414038128463528 0.6123603815059898 0.04385628777624839 LSELLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LSELLR 6 0 P08238;A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2;P07900;P07900-2 P08238;A0A669KBG8;Q92538-3;P07900 HSP90AB1;GBF1;HSP90AA1 Heat shock protein HSP 90-beta;Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1;Heat shock protein HSP 90-alpha 0 ;;;;; 148.37 0.025066 24375240000.0 5751120.0 6799270.0 6043380.0 6119530.0 5554160.0 6154860.0 6033000.0 5786590.0 7214660.0 6225030.0 False True 5720156.608929507 7025579.591704485 6894235.373999381 6894261.870550461 6261449.353914492 5729389.015182004 5741160.741701919 6218414.729508634 5436703.71449102 5827743.255883685 0.9815388835385707 1.2055403409564183 1.1830025914472067 1.1830071380701301 1.0744209343115685 0.9831230999062317 0.9851430458789767 1.067036493625646 0.9329003485186359 1.0 22.474505889481847 2.9897624070714173 4.016369346555327 1.0037112267429458 1.145767168235252 0.5140517678955032 0.06580937053608084 0.1763878895775278 6.524374242750437 0.019902200749045383 0.022646691553087912 976.7027422485068 -2.9897624070714173 0.14205594149230616 LSELSNSQQSVQTLSLWLIHHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSELSNSQQSVQTLSLWLIHHR 22 0 Q96P16;A0A0C4DGQ6;E9PQF3;K7EQR8;Q9NQG5;E9PIQ9 Q96P16;Q9NQG5 RPRD1A;RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1A;Regulation of nuclear pre-mRNA domain-containing protein 1B 0 ; 208.28 4.0889e-23 1046070000.0 725260.0 771870.0 639630.0 646980.0 637870.0 849980.0 816840.0 571000.0 996000.0 732430.0 False True 721355.2807439618 797561.2263447322 729684.3442363737 728887.6016636457 719098.9635483024 791222.8832377017 777326.3285681744 613610.9194792499 750549.1457162298 685685.6903351285 1.0520203220099282 1.1631586273222716 1.0641673794880289 1.0630054147803527 1.048729722209666 1.1539148248098805 1.1336481707650288 0.8948865757711058 1.0945964839216629 1.0 19.387187889162156 1.7584171731791092 24.99999999999763 0.9877623977176959 1.0972658862833202 0.3697131565273183 0.05977963357182432 8.311809969674895 10474.391518892262 0.02655579625457562 0.014726826620506865 57.334650987819714 -1.7584171731791092 0.10950348856562431 LSEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMAR 34 1 P12532;P12532-2;F8WCN3 P12532 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial 0 442.49 1.6710999999999983e-231 569240000.0 330320.0 354920.0 346750.0 279740.0 311340.0 418090.0 391680.0 337620.0 466530.0 411650.0 False True 328541.59382200224 366733.2976463289 395569.3859949703 315155.05531761155 350987.3035432428 389188.42237799754 372732.94203709695 362814.9187996223 351559.9326817197 385378.1445687035 0.8525174518905062 0.9516193453491221 1.0264447830524286 0.8177813395991042 0.9107607903817451 1.009887114417343 0.9671875462845501 0.9414517245280402 0.9122466793625998 1.0 18.55591523077099 2.813232263709215 24.999895534934964 0.9609302097180827 0.9151786122907001 0.17511774037007743 0.058182593758553794 291.71555494366953 97664.04391944823 0.018105768896718787 0.019204067475278187 650.4774772139307 -2.813232263709215 -0.04575159742738266 LSESSAS(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSESSASPQPK 11 0 Q8N5Y2;Q8N5Y2-3;Q8N5Y2-2;A0A3B3IT59;Q8N5Y2-6;Q8N5Y2-4;A0A3B3ITL5;A0A3B3ITF3;A0A3F2YNX2;A0A3B3IRN2;A0A3B3IU80;A0A3B3IUB0;A0A3B3IS72;A0A3B3ISB4;A0A3B3IRI6;A0A3B3ITV8;A0A3B3IRT2;A0A3B3ITF8;A0A3B3IT49;Q8N5Y2-5;A0A3B3ITX5 Q8N5Y2 MSL3 Male-specific lethal 3 homolog 1 LSESS(0.005)AS(0.995)PQPK 259.4 1.1328e-09 0.0 563780.0 501760.0 409010.0 355890.0 393950.0 576730.0 555310.0 504340.0 714680.0 570410.0 True False 560744.671121846 518460.77827967436 466595.05282134865 400945.6375097762 444117.1973754114 536862.0125763899 528447.5338097943 541976.4117866278 538556.6902213617 534005.9454474298 1.0500719624984933 0.9708895241705023 0.8737637788478192 0.7508261676259694 0.8316708852432291 1.0053483807686208 0.9895911053331472 1.0149258007465063 1.0085218990775824 1.0 19.026496278933486 2.7181683528061678 23.75337112579204 1.0042701746863747 0.8903970273050769 0.3442203824313743 0.07452990759219717 533.5570920200921 621497.8094043428 0.026914956641765405 0.025410311357531197 522.598733393239 -2.7181683528061678 -0.11387314738129783 LSETSIKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSETSIKDR 9 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ; 167.12 5.4924e-05 294860000.0 1073350.0 1262590.0 1169360.0 1146940.0 1072250.0 1275090.0 1224190.0 1060470.0 1649790.0 1256140.0 False True 1067571.2028603952 1304614.5448982287 1333995.7237406736 1292142.486401593 1208794.6817763287 1186946.029539002 1164971.2528400584 1139607.6563575468 1243221.3605533938 1175972.0697644395 0.90782020279975 1.109392457900431 1.1343770469037484 1.0987867140929835 1.0279110472568145 1.0093318200803534 0.9906453416648028 0.9690771453320512 1.0571861292610676 1.0 20.16542236479535 3.006551258810493 3.8120478751016664 1.0001451581054321 1.0709430595075036 0.15409580799011047 0.0611369715705662 0.34644004110961635 11.214736931124953 0.01884092759132798 0.02174757269855206 1015.1991812002585 -3.006551258810493 0.07079790140207143 LSETWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSETWLR 7 0 Q9UJA5;Q9UJA5-4 Q9UJA5 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 0 ; 132.29 0.007872 66161000.0 79584.0 104565.0 102589.0 107997.0 101048.0 91300.0 92128.0 90704.0 112770.0 117023.0 False True 79155.52858661363 108045.38281412258 117032.63948042691 121669.40912681815 113915.8638415802 84988.64589708249 87671.41667686294 97472.7930655794 84979.34454058156 109554.49195156903 0.7225219813132452 0.9862250364128056 1.0682596157915987 1.110583481876807 1.039810069056221 0.7757659625189407 0.8002539659954794 0.8897197306037382 0.7756810608746973 1.0 16.74128911333723 2.7437883110566252 24.872780618338663 0.8416079125648177 0.9970704849872459 0.2575571719471753 0.11535542524489786 531.0947307184708 2526891.6378975636 0.036273228005355394 0.037431395497441705 554.3554366213336 -2.7437883110566252 0.15546257242242822 LSEVLQAVTDHDIPQQLVER ddPTM_BT-474_Trastuzumab_2h_R1 4 LSEVLQAVTDHDIPQQLVER 20 0 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ;;; 301.27 7.091e-55 2529940000.0 823221.0 960292.0 930487.0 907991.0 960074.0 975322.0 1044799.0 868877.0 1092370.0 987173.0 False True 818788.8696044523 992254.7387112264 1061491.4816620098 1022942.5675015857 1082333.7330955726 907900.2858010321 994258.0808502266 933717.0138080063 823170.0505080709 924170.7739786729 0.8859713947450014 1.0736703287417793 1.148588022419443 1.1068761275556114 1.171140403451613 0.9823945004151189 1.0758380473013867 1.010329519281632 0.8907120563488704 1.0 19.817799940804786 1.5139497717355008 3.6837562212009236 0.9448969790094095 1.0694511442018277 0.24892742842882798 0.08101770524248847 0.2594171425423625 7.536944432915673 0.054242646922056555 0.021201736556466757 32.65500628887299 -1.5139497717355008 0.12455416519241824 LSFASETPLEKEPHS(ph)PADQPEQQAESTLTSAETR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSFASETPLEKEPHSPADQPEQQAESTLTSAETR 34 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 LSFAS(0.001)ET(0.001)PLEKEPHS(0.998)PADQPEQQAESTLTSAETR;LS(0.078)FAS(0.078)ET(0.073)PLEKEPHS(0.771)PADQPEQQAESTLTSAETR 167.66 1.2009999999999999e-14 245880000.0 52854.0 65521.0 64904.0 66778.0 56840.0 82902.0 73713.0 66174.0 84850.0 77836.0 True False 52569.43993663142 67701.82687671912 74041.91904431881 75232.08795309742 64078.23708292515 77171.1798703168 70147.22057899447 71112.2399047633 63939.85443174923 72868.43984124767 0.7214294700306474 0.9290966984364614 1.0161040802524068 1.0324371993828771 0.8793688628784561 1.0590480602911652 0.9626557221729779 0.9758990320046584 0.8774697876206708 1.0 16.153006481574277 4.716997150404194 3.319165399394975 0.9754517151057827 0.6930845455960281 0.6448801461815832 0.056251354167256365 0.1706054342185836 3.1414474927108667 0.01297948474124949 0.11943532956064061 52119.129133013 -4.716997150404194 -0.2823671695097546 LSFDKDAMVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSFDKDAMVAR 11 1 P37837;F2Z393 P37837 TALDO1 Transaldolase 0 ; 157.03 2.8075e-05 3057590000.0 2578370.0 2748770.0 2630160.0 2372690.0 2284060.0 2773910.0 3056450.0 2632070.0 3638760.0 2871230.0 False True 2564488.34240384 2840261.1477834466 3000463.6662394553 2673072.310722612 2574921.50231573 2582156.130781772 2908597.836727139 2828488.428780645 2742036.3548859325 2687985.6432163245 0.9540558182949544 1.0566504158797947 1.1162498854157694 0.9944518555999919 0.9579372229215826 0.9606286913393177 1.0820734270168346 1.0522706607153605 1.0201082590623265 1.0 21.358094001891768 -0.09181047331116021 7.097805879064777 1.000000000490821 1.0256384325920882 0.009670431625152465 0.05291818116461938 3619389.554969321 509930.7254249929 0.05345394700909822 0.012964486437046592 0.8094490667594206 0.09181047331116021 0.02563843210126726 LSFFFDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSFFFDFR 8 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 98.392 0.017575999999999998 63766000.0 153050.0 196000.0 180570.0 154990.0 101080.0 166850.0 156190.0 128690.0 326480.0 175330.0 False True 152225.99580545368 202523.7415154981 205992.6864574239 174611.71810851744 113951.93885190146 155316.0522226529 148634.49299625785 138293.5012745792 246023.3786078666 164140.28929243493 0.9274139607140904 1.2338454037611608 1.254979428544957 1.0637956035122276 0.6942350311621718 0.9462396642054126 0.9055332705759297 0.8425323354231046 1.4988603935597278 1.0 17.32456987555666 3.4725079886510484 24.93894547770482 0.9512959665610142 1.1501114331185784 0.09033100039225617 0.21209228312522416 228.13635669964316 1233279.9098808332 0.05764235024541561 0.07833952045185366 2968.301343525036 -3.4725079886510484 0.1988154665575642 LSFQHDPETSVLVLR ddPTM_BT-474_Trastuzumab_2h_R1 5 LSFQHDPETSVLVLR 15 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;; 181.58 5.819600000000001e-07 7401500000.0 2542302.0 4027436.0 3900060.0 4233216.0 4035837.0 3921673.0 4300004.0 3828334.0 4153254.0 3827371.0 False True 2528614.528508307 4161486.7726235287 4449154.548070783 4769140.711558591 4549776.9196699755 3650576.9761352553 4091996.378909536 4114023.7229661504 3129740.202452323 3583104.9060028307 0.7057048551026458 1.1614191830252376 1.2417036801286632 1.3310078372443899 1.2697861321469166 1.018830615318962 1.14202527870567 1.148172836378266 0.8734715517843257 1.0 21.77277885265916 1.2485364762193545 24.560009268595326 0.93673577710427 1.141062401083291 0.17035075369285158 0.1660497433026333 235.80323537662272 580546.6705218067 0.11436061299689665 0.04063090278853155 17.722968933894457 -1.2485364762193545 0.20432662397902102 LSFS(ph)PENILIQNQDIVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSFSPENILIQNQDIVR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 LSFS(1)PENILIQNQDIVR 163.44 2.8505000000000004e-09 84900000.0 61520.0 62454.0 70514.0 65268.0 63406.0 57275.0 82826.0 56054.0 82051.0 77976.0 True False 61188.783155514546 64532.743635759754 80441.75828132466 73530.92210792111 71480.37826319419 53315.71406084776 78819.38995395383 60237.03411644461 61830.63047707076 72999.50492138778 0.8382081936227918 0.8840161820995119 1.1019493675738121 1.0072797368571966 0.9791899046462094 0.730357200617494 1.0797249931877402 0.8251704471326633 0.847000682314974 1.0 16.155599059297163 LSGAEPDDEEYQEFEEMLEHAESAQDFASR ddPTM_BT-474_Trastuzumab_2h_R1 6 LSGAEPDDEEYQEFEEMLEHAESAQDFASR 30 0 Q96GC9;K7EPE7;Q96GC9-2 Q96GC9 VMP1 Vacuole membrane protein 1 0 ;;;;; 373.3 8.187899999999996e-137 621434000.0 112220.2 163073.0 185139.5 136174.3 183759.3 232834.0 158454.0 134018.6 176024.9 162040.1 False True 111616.01891203629 168500.78622528972 211205.5323386178 153413.95241773428 207159.95762829675 216738.7336122816 150788.97466693798 144019.74846466168 132645.92200781612 151698.56208849078 0.7357750619081477 1.1107606025098486 1.3922711555790135 1.0113078878641109 1.3656026449838958 1.4287461306709732 0.9940039812571051 0.9493811047506845 0.874404609916074 1.0 17.210847885152706 2.023692356828015 24.789583868118253 0.9446512321527677 1.184836854855216 0.23538303893053003 0.19505730644966482 293.38756115280347 306973.2952895737 0.07464903806223591 0.055129138774684616 105.60691516425923 -2.023692356828015 0.24018562270244825 LSGAQADLHIEDGDSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGAQADLHIEDGDSIR 17 0 M0QXB5;O95571 M0QXB5 ETHE1 Persulfide dioxygenase ETHE1, mitochondrial 0 130.01 3.1704e-05 146150000.0 91122.0 106930.0 117230.0 118870.0 138920.0 178960.0 122170.0 114450.0 138940.0 131980.0 False True 90631.40927660593 110489.10040945014 133734.96501857357 133918.9298119843 156610.63855664968 166588.91642652644 116260.17036527827 122990.84016532425 104700.09870061549 123556.9234062371 0.7335194724671407 0.8942364164100958 1.0823753241157725 1.0838642313201539 1.2675181142357907 1.348276663370829 0.9409441993228647 0.9954184417569896 0.8473835040095397 1.0 16.91481632754782 4.473639157706019 2.4525620429413575 1.0775083359376865 0.7292310803798933 0.37542198521742476 0.13958049116559745 0.38527392664814963 4.029618109907649 0.03892956667645311 0.22013763593672336 29760.426970416473 -4.473639157706019 -0.3482772555577932 LSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSAR 36 1 P51659-3;P51659;P51659-2;A0A2R8YD50;A0A2R8Y7L2;E7ET17;E7EPL9 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 209.92 8.254799999999998e-31 107180000.0 125440.0 147590.0 133550.0 147860.0 148050.0 162800.0 148060.0 142160.0 176720.0 160510.0 False True 124764.64497769407 152502.4439299609 152352.6791625907 166579.06083957283 166903.28993889978 151546.01918997848 140897.7721558737 152768.7010738532 133169.72392667894 150266.11438047537 0.8302912835144501 1.0148824607510853 1.0138857971454038 1.1085603798724237 1.1107180792357412 1.0085175877128385 0.9376549911919535 1.0166543648492918 0.8862259097849021 1.0 17.197160186772283 4.738704175838915 24.060222937608906 1.014149972401805 0.8302912259348467 0.41794242955745664 0.06379153248313289 7.0742431105310315 1183612.860478818 0.0159921674142024 0.09297955315058644 54790.36275827698 -4.738704175838915 -0.18385874646695832 LSGEHS(ph)ESST(ph)PRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 2 LS(0.001)GEHS(0.714)ES(0.283)S(0.153)T(0.848)PRPR;LS(0.004)GEHS(0.995)ES(0.007)S(0.167)T(0.826)PRPR 118.72 0.00052492 652720000.0 437580.0 453580.0 360270.0 434590.0 409790.0 418370.0 407500.0 376060.0 486370.0 424340.0 True False 435224.1178997085 468677.13610510016 410992.88447702356 489609.0494404832 461974.3274843758 389449.06663704745 387787.6681988282 404123.50679398724 366510.63052409893 397258.25790424837 1.095569718791374 1.1797794678394475 1.0345735457967136 1.2324704136383096 1.162906794994117 0.9803422808416907 0.9761601187213007 1.0172815762873169 0.9226004072455039 1.0 18.59971768397582 2.734635829617961 24.74683073035897 0.9831442850578882 1.1423735168243478 0.693214904343564 0.05377858648220998 167.31095289118159 1054936.0328666163 0.016620420679318935 0.016224375206383805 542.7949889396731 -2.734635829617961 0.15922923176645964 LSGEHS(ph)ESSTPRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 LS(0.001)GEHS(0.993)ES(0.005)S(0.001)T(0.001)PRPR;LSGEHS(0.976)ES(0.021)S(0.003)TPRPR;LSGEHS(0.99)ES(0.004)S(0.003)T(0.003)PRPR 176.17 1.3735e-06 1336320000.0 330338.0 474843.0 463351.0 540674.0 483625.0 402802.0 457668.0 397162.0 389326.0 403167.0 True False 328559.4969120019 490647.8622063455 528586.7932809094 609123.2729634455 545211.7770800445 374957.2458339171 435528.8503784576 426800.245187772 293381.8240011215 377436.53689136537 0.8705026270590456 1.299947976015806 1.4004653540816279 1.6138428939081877 1.444512451207045 0.9934312372674142 1.153912798070772 1.1307867773029472 0.7773010700486671 1.0 18.52587456096973 2.7323740467565414 24.773577270458528 1.04022953361389 1.3445594531168432 0.37292911419129293 0.201597148032722 529.4270235669889 2120039.114136752 0.06771426230981649 0.0653344249633742 539.9754894093227 -2.7323740467565414 0.3043299195029532 LSGEHSES(ph)STPRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 LSGEHS(0.459)ES(0.508)S(0.03)T(0.003)PRPR;LSGEHS(0.023)ES(0.967)S(0.005)T(0.005)PRPR 134.76 2.2341e-05 2334610000.0 227301.0 276685.0 271682.0 294041.0 277932.0 264328.0 269746.0 205437.0 330323.0 306970.0 True False 226077.23667151507 285894.2929653852 309932.46409772354 331266.56045129715 313324.9927679723 246055.62752118328 256697.35545021138 220767.7521279485 248919.3227514281 287378.9117897606 0.7866869397741602 0.9948339326113759 1.0784801924661145 1.152717011795367 1.0902852642061407 0.8562062748055487 0.8932365769343749 0.768211385981783 0.8661711508377185 1.0 18.132594673418645 2.7252334395527 23.739337924265744 0.8562143907484286 1.0297245048220125 0.30642919408389657 0.1055201902353486 433.8370305250141 772780.1755435754 0.03551399806902028 0.033690884461457966 531.1698789884132 -2.7252334395527 0.17351011407358385 LSGEHSESS(ph)TPRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 LSGEHSES(0.054)S(0.57)T(0.376)PRPR;LSGEHSES(0.067)S(0.587)T(0.345)PRPR 124.09 5.9828e-05 894800000.0 268830.0 365670.0 341660.0 379750.0 358180.0 358620.0 373970.0 311090.0 398480.0 401790.0 True False 267382.6491498212 377841.10489781754 389762.75823804305 427826.31106335495 403792.09990081197 333829.4435006761 355879.6423958676 334305.115483012 300279.94335843716 376147.418210275 0.7108453659526335 1.004502720490815 1.0361968190358728 1.137389997514725 1.0734942747236482 0.8874963042124558 0.9461174666282642 0.8887608934647208 0.7983038798649252 1.0 18.5209386625078 2.7161838992141987 24.15276316800302 0.9001729907788635 1.003632063745544 0.12450432946117307 0.11502250574255235 1008.3155586538724 1088343.6717570196 0.03816962995755575 0.03601447432971951 520.2162321300568 -2.7161838992141987 0.10345907296668055 LSGEMPPAS(ph)PSFPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSGEMPPASPSFPR 14 0 Q96JM7-2;Q96JM7 Q96JM7-2 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 1 LSGEMPPAS(0.974)PS(0.026)FPR;LSGEMPPAS(0.975)PS(0.025)FPR 201.3 1.8912e-08 293165000.0 290140.0 338210.0 304730.0 313050.0 282020.0 319510.0 287620.0 276400.0 341810.0 307040.0 True False 288577.9184775844 349467.1153977377 347633.3352393575 352682.0979022607 317933.5753364982 297423.0257456384 273706.7217849005 297026.3715307609 257575.50551934232 287444.4443298308 1.0039432807629878 1.215772725100014 1.2093931265565263 1.2269574342427447 1.1060696479201468 1.0347148174635012 0.9522073819274558 1.0333348839747802 0.8960879592572153 1.0 18.132923621329265 2.7466975574155534 2.2816315432012786 0.9797861424085377 1.1702823051068514 0.6154835902160387 0.06864409605613984 0.2007906713921738 2.061834564342193 0.02390234520116418 0.023864095932035475 558.081411602445 -2.7466975574155534 0.1904961626983137 LSGFS(ph)FKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 LSGFS(1)FKK 121.61 0.00087343 1017100000.0 9458100.0 1890100.0 1654400.0 2472900.0 1417600.0 1814300.0 1146500.0 1938900.0 6401600.0 2536300.0 True False 9407178.640493685 1953010.8359104216 1887325.1396974155 2785968.886447848 1598122.9572265067 1688881.7114028123 1091039.4149446804 2083590.5635347036 4824011.457045197 2374431.162564326 3.9618662308719736 0.8225173535042468 0.7948535924954555 1.1733205537275173 0.6730550804852873 0.7112784476678037 0.45949507071259343 0.8775114631179612 2.0316493200987917 1.0 21.179150500771367 4.739533356622786 24.952884869480283 0.9078402946931531 3.9618672191430493 0.8310269356197875 0.4071437075478394 29.452843925231242 755418.9867421454 0.09570830253623144 0.5833246949413499 54895.07169504822 -4.739533356622786 3.054026924449896 LSGINEIPRPFS(ph)PPVTS(ph)NTSPPPAAPLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9;Q0JRZ9-3 Q0JRZ9 FCHO2 F-BAR domain only protein 2 2 LSGINEIPRPFS(1)PPVT(0.012)S(0.825)NT(0.098)S(0.065)PPPAAPLAR 132.82 5.9265e-06 183900000.0 94374.0 104360.0 92116.0 104820.0 98971.0 101820.0 119230.0 95263.0 111730.0 117610.0 True False 93865.90086993702 107833.55951304786 105085.13211337473 118090.20125256325 111574.3702029239 94781.4230584988 113462.38939716892 102372.0087957123 84195.63860529561 110104.02910901331 0.8525201269156188 0.9793788691082551 0.9544167726081176 1.0725329691218008 1.0133541079814148 0.8608351921858945 1.030501702029728 0.9297753190698809 0.7646917127976673 1.0 16.748507737791737 1.4618970678102055 9.776872554592837 0.8706434583269427 0.9683805393515594 0.1349220795313789 0.08366507185065489 0.19568199431670721 72.52442997145609 0.04404687951694203 0.01994461699860642 28.966569693040572 -1.4618970678102055 0.09773708102461676 LSGINEIPRPFS(ph)PPVTSNTSPPPAAPLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9;Q0JRZ9-3 Q0JRZ9 FCHO2 F-BAR domain only protein 2 1 LSGINEIPRPFS(0.989)PPVT(0.011)SNTSPPPAAPLAR;LSGINEIPRPFS(0.471)PPVT(0.237)S(0.237)NT(0.053)S(0.002)PPPAAPLAR 199.75 2.1819e-25 1928510000.0 542390.0 531170.0 551490.0 533640.0 569750.0 577360.0 582800.0 511520.0 553420.0 559400.0 True False 539469.8325051944 548849.6723509547 629134.9983629878 601198.7692846587 642304.2853271755 537448.46215925 554607.7374877963 549692.2198459294 417037.05644806847 523698.61307356454 1.030115068166916 1.0480258275456942 1.2013302740494607 1.1479861780733944 1.2264769645990075 1.0262552711472506 1.059020825418703 1.04963466796257 0.7963302671368481 1.0 18.998377258497438 1.451012130413864 3.622411203772643 0.8989093643413504 1.1084433718347206 0.49675104350749155 0.0811368462529822 0.17621645665064656 4.327418795812778 0.05939921579806088 0.021276329895938608 28.24958878616317 -1.451012130413864 0.20953400749337026 LSGLANVVLHELS(ph)GDDDTDQNMR ddPTM_BT-474_Trastuzumab_2h_R1 6 LSGLANVVLHELSGDDDTDQNMR 23 0 Q14789;Q14789-2;E7EU81;F8WF12;C9J8Q0 Q14789 GOLGB1 Golgin subfamily B member 1 1 LSGLANVVLHELS(1)GDDDTDQNMR;LSGLANVVLHELS(0.994)GDDDT(0.006)DQNMR;LSGLANVVLHELS(1)GDDDTDQNMR;LSGLANVVLHELS(1)GDDDTDQNMR;LSGLANVVLHELS(1)GDDDTDQNMR;LSGLANVVLHELS(1)GDDDTDQNMR 219.67 1.3198e-32 100094000.0 92867.8 98842.1 94424.5 94469.8 102562.1 107704.3 104910.4 84585.5 117145.6 102426.3 True False 92367.81008338257 102131.99954718872 107718.64884753301 106429.66699379313 115622.77550180661 100258.95524965096 99835.48315535297 90897.699526466 88276.63655061762 95889.36584243283 0.9632748039564998 1.0651024610488498 1.1233638673191173 1.1099214814777305 1.2057935151203323 1.0455690719072885 1.041152814790792 0.9479434839086409 0.9206092435283743 1.0 16.549083208379276 1.9791642191041448 2.1328807011225326 0.9499527348272571 1.0939321838957876 0.4730391214619435 0.0608008569330161 0.27097056381945495 2.2864972535234913 0.036040831466752264 0.018727420955335257 95.31565114955045 -1.9791642191041448 0.14397944906853055 LSGLANVVLHELSGDDDTDQNMR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSGLANVVLHELSGDDDTDQNMR 23 0 Q14789;Q14789-2;E7EU81;F8WF12;C9J8Q0 Q14789 GOLGB1 Golgin subfamily B member 1 0 ; 176.27 4.1671000000000015e-13 108844000.0 78334.0 102655.0 86631.0 90489.0 90558.0 98525.0 95443.0 89456.0 100212.0 94592.0 False True 77912.25844772554 106071.80961874212 98827.8917898494 101944.8981219537 102090.02452068155 91714.19865290298 90826.0574623331 96131.66096836378 75516.09537200294 88555.05757571453 0.8798171508285747 1.1978063424333587 1.1160050537525945 1.151203566603645 1.1528423933708656 1.0356743156593557 1.0256450613752566 1.0855581104012186 0.8527586954300912 1.0 16.434287084392675 1.256191097965959 24.763052785487364 0.9263794001622087 1.0860622976473115 0.3164298459427237 0.09036192961711942 201.4933558153129 283011.53802121343 0.05795711503986886 0.021059401605491867 18.038112780868218 -1.256191097965959 0.1596828974851029 LSGLS(ph)FKR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGLSFKR 8 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 LSGLS(1)FKR 113.93 0.0016873 942660000.0 2622700.0 592790.0 371710.0 729150.0 409150.0 459740.0 408240.0 485630.0 1300900.0 699930.0 True False 2608579.6746093663 612520.6568008772 424043.53703876113 821460.3152385653 461252.8272779527 427959.25591155177 388491.871571754 521870.176579173 980310.626166911 655259.8681597791 3.9809849517188622 0.9347751732775426 0.6471379641021476 1.2536405099026449 0.7039235114052191 0.6531137899737784 0.5928821379871593 0.7964323804001373 1.4960638882402473 1.0 19.321707650022894 4.73829743753397 6.312463904557513 0.859618248168069 4.050486975985733 0.9176475906571884 0.276993218676171 0.029751685603019277 6.630749593347271 0.06499946903288975 0.40737203907063185 54739.0728897694 -4.73829743753397 3.1908687278176644 LSGQNAMGS(ph)QDSLLEITFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGQNAMGSQDSLLEITFR 19 0 O75052-3;O75052;E9PIP8;H7C2G1;O75052-2 O75052-3 NOS1AP Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein 1 LSGQNAMGS(1)QDSLLEITFR 197.85 8.0597e-16 79288000.0 68888.0 103250.0 101100.0 99966.0 108770.0 131930.0 100970.0 95100.0 121710.0 115060.0 True False 68517.1146621763 106686.61383405703 115334.00122304677 112621.68535025514 122621.2147697003 122809.98962981465 96085.69535714276 102196.84490801518 91716.20133044406 107716.77229217807 0.6360858499948919 0.9904364154606604 1.07071534700471 1.0455352769462185 1.1383669614337721 1.1401194727288777 0.8920216723214988 0.9487551727859959 0.8514570143418984 1.0 16.716883380018125 4.736508667391411 5.148264684674405 1.0110045576458377 0.6196698935724477 0.6064472689224045 0.09015342676173294 0.11628360514209574 10.317420721745211 0.023759460726095725 0.1616058847731664 54514.07751762654 -4.736508667391411 -0.39133466407339 LSGS(ph)RQDLIPSYSLGSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSGSRQDLIPSYSLGSNK 18 1 Q9NQT8;H0YBA8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 LS(0.034)GS(0.966)RQDLIPSYSLGSNK 296.75 1.4277e-49 835690000.0 1144000.0 1052000.0 901500.0 985240.0 866460.0 1190600.0 1025300.0 1032500.0 1758600.0 1173100.0 True False 1137840.8311103485 1087015.184052572 1028423.3640215297 1109971.2829810667 976798.5450892218 1108296.6243709363 975702.3219736413 1109550.3929287659 1325216.5940326948 1098231.753658562 1.0360662285713702 0.9897867006953459 0.9364356481184611 1.0106894826919697 0.8894284305978157 1.009164614553208 0.8884302595725029 1.010306239309233 1.2066820956669424 1.0 20.06675109959939 1.441782731631648 8.551385592974592 1.1057732100942856 0.9653367672956243 0.4052555076197484 0.0659309687282043 0.16749808114233755 30.68503691322349 0.03579007829910013 0.01493968361174917 27.65557749067712 -1.441782731631648 -0.1404364427986613 LSHETVTIELK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSHETVTIELK 11 0 P62314;J3QLR7 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 0 ; 156.51 3.1029000000000004e-05 855150000.0 1463570.0 1535030.0 1479380.0 1253610.0 1183800.0 1547010.0 1734610.0 1347340.0 2451000.0 1692430.0 False True 1455690.301737914 1586122.5456047682 1687663.8449985262 1412316.8974644695 1334549.9130676787 1440068.8399698318 1650700.2874463056 1447885.352453892 1846983.8917173517 1584417.66843778 0.918754145914827 1.001076027616297 1.065163484741082 0.8913791644705653 0.8422967880581207 0.9088947117016974 1.041834056971783 0.9138280778460974 1.1657178081953978 1.0 20.595521263804464 1.2513629587917612 24.99674489339721 1.08285893555962 0.9497494535651432 0.3379301987775464 0.07552413483713505 227.32354251278338 443857.3553601583 0.05191720396886557 0.01869132799506983 17.838690015633695 -1.2513629587917612 -0.13310948199447692 LSHLDYDITLQEAGLCPQETVFVQER ddPTM_BT-474_Trastuzumab_2h_R1 1 LSHLDYDITLQEAGLCPQETVFVQER 26 0 O94888;C9JAT7 O94888 UBXN7 UBX domain-containing protein 7 0 106.51 0.0029920000000000003 39344000.0 11507.0 18538.0 16760.0 16806.0 14422.0 16414.0 17556.0 13706.0 18035.0 17206.0 False True 11445.047590547889 19155.02612354235 19119.662319468494 18933.63787684201 16258.556214108847 15279.338814399916 16706.7492095672 14728.811317657779 13590.515906618686 16107.89834920228 0.710523951817382 1.1891697916315056 1.1869743590985207 1.1754257114355127 1.009353042938344 0.9485619093912772 1.0371774670650673 0.914384421750911 0.8437175112476257 1.0 13.975480652676788 3.011714453850452 7.734409970614577 0.951365979999095 1.0844017894932145 0.1306410831017899 0.1386610209713735 0.264258942227653 97.3078500096854 0.04047644695213834 0.047334813840569256 1027.3406054190282 -3.011714453850452 0.13303580949411953 LSHSDEKPYQCPVCQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSHSDEKPYQCPVCQQR 17 1 I3L2Z5;A0A087WWR2;P56270-3;P56270;P56270-2 I3L2Z5 MAZ Myc-associated zinc finger protein 0 178.14 5.9417e-10 75942000.0 22534.0 29822.0 27807.0 24946.0 27396.0 30947.0 32252.0 30003.0 39042.0 31234.0 False True 22412.679447762755 30814.607242220303 31721.983897223166 28104.161042229014 30884.718211186108 28807.706731402082 30691.847545395376 32241.976212146998 29420.62223599707 29240.619379227253 0.7664912687754105 1.053828814040486 1.0848601900600878 0.9611342590846216 1.0562265392068553 0.9851948195005501 1.0496305549259017 1.1026434082669236 1.0061559180547897 1.0 14.835686250548267 4.740487701912287 24.989231886907643 1.0387498172820389 0.7664911760130796 0.7769478198580066 0.04279717896287702 76.74746894521695 995138.4316742711 0.010285949804025028 0.06749375227901268 55015.83412399309 -4.740487701912287 -0.27225864126895927 LSIAEVVHQLQEIAAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSIAEVVHQLQEIAAAR 17 0 O14976-2;O14976 O14976-2 GAK Cyclin-G-associated kinase 0 61.82100000000001 0.066886 154640000.0 44965.0 47001.0 45280.0 44677.0 41930.0 60463.0 61680.0 52171.0 64310.0 52147.0 False True 44722.91343608113 48565.39987229549 51655.030419184564 50333.10361916399 47269.53696141898 56283.33512459251 58696.30275951838 56064.264938970075 48461.662209850154 48818.933814707176 0.9160977092582042 0.9948066472861948 1.0580941938478587 1.031016035913522 0.9682623782983677 1.152899719977838 1.2023266010335432 1.1484123178880274 0.9926816999688471 1.0 15.575153167150468 2.7390189815666774 24.9997536978192 1.1201934301810892 0.9993748743182704 0.33060437201206494 0.07189619960664648 43.09552642461244 2350510.7766937437 0.02292221997967283 0.022983541177776245 548.3009288062711 -2.7390189815666774 -0.12081855586281876 LSIPTYGLQCTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSIPTYGLQCTR 12 0 P49327;A0A0U1RQF0;J3KTF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 166.29 0.00012169 560270000.0 206458.0 290740.0 254660.0 246870.0 237690.0 253180.0 243530.0 225543.0 326680.0 245750.0 False True 205346.45306764013 300417.1051439583 290513.9144555995 278123.7166878483 267958.41260099376 235678.26252161394 231749.5235250568 242374.1639441476 246174.0912877288 230066.02460283975 0.892554445716734 1.305786483087039 1.262741488914368 1.2088865236315096 1.1647022330375256 1.0243940317935363 1.0073174599557813 1.0534982919036189 1.070014973800222 1.0 17.81168842124919 2.7818850524652534 4.968476799794148 1.0336463783259764 1.1838507937715348 0.2891875789823539 0.10505501820207613 0.24598016448635102 14.691723942062039 0.032112051102678445 0.033499263841357194 605.1806764632884 -2.7818850524652534 0.1502044154455584 LSIVPVRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSIVPVRR 8 1 P15880;H0YEN5;E9PPT0;E9PMM9;I3L404;E9PM36 P15880 RPS2 40S ribosomal protein S2 0 109.71 0.005716399999999999 253400000.0 301230.0 441980.0 508070.0 396060.0 253250.0 317010.0 382010.0 286510.0 622350.0 384450.0 False True 299608.2111497989 456691.0371174479 579601.8397763935 446201.15539105335 285499.8863696484 295095.84486127173 363530.7168800842 307890.8310683008 468980.1815627467 359914.07185579534 0.8324437263732248 1.2688890844491003 1.6103894932138667 1.2397435673752433 0.7932445789005936 0.8199063830421892 1.010048634680052 0.8554564968264471 1.303033746762339 1.0 18.45729298403398 3.3158772914972845 7.933265881374007 0.9466869339685592 1.2692151199999437 0.2636501389180237 0.22123253501220239 0.30229396328396757 27.06408299384856 0.06207432498060005 0.0840252509530715 2069.5565196659663 -3.3158772914972845 0.32252818603138456 LSKDPNIVIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSKDPNIVIAK 11 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 107.18 0.0016075 0.0 4375100.0 5169300.0 4532000.0 4099700.0 4204600.0 5624600.0 5477500.0 5151600.0 7195000.0 5244100.0 False True 4351544.947719304 5341357.025592166 5170066.2071498325 4618721.5996482875 4740030.887383305 5235784.640884224 5212532.398917991 5536038.551294755 5421888.658060518 4909417.048300116 0.8863669362182267 1.0879819280054053 1.053091671839117 0.9407881942414157 0.9654977038515272 1.0664778708700482 1.0617416177187122 1.1276366413425003 1.1043854300253113 1.0 22.227120296215137 2.5941449154844176 4.2902306802077925 1.0857065741337262 0.9937705864712046 0.3146630379874539 0.06136463961060452 0.2751987244407958 8.389022320871785 0.020568777390362423 0.019158444058097242 392.7759751150529 -2.5941449154844176 -0.09193598766252153 LSKEDIER ddPTM_BT-474_Trastuzumab_2h_R1 10 LSKEDIER 8 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;;;;;;; 131.5 0.00091405 59162870000.0 53120100.0 58758900.0 52614800.0 52060300.0 49969300.0 58821100.0 61930600.0 56958500.0 79691300.0 61987400.0 False True 52834107.28379794 60714654.46599486 60022506.50396013 58651128.64213722 56332594.163754664 54754935.80697565 58934780.28013344 61209032.499402575 60052446.92371062 58031311.06191683 0.9104413861583499 1.0462395792025967 1.0343124324714772 1.0106807440479688 0.9707275802135557 0.9435412504906975 1.0155686508142587 1.0547587393656377 1.0348283680793862 1.0 25.790328187298208 2.0038598249487367 24.970826650136033 1.0357509342994302 0.9903707968973151 0.1925027381597908 0.04009056284352519 174.00638618063456 1125708.758370776 0.015369929725532435 0.01130119773344955 100.89271871505463 -2.0038598249487367 -0.045380137402115106 LSKEEIER ddPTM_BT-474_Trastuzumab_2h_R1 8 LSKEEIER 8 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 ;;;;;;; 120.76 0.0013335 51663110000.0 44516390.0 45856320.0 42119310.0 41780120.0 42813840.0 50378500.0 51115000.0 45142550.0 64971100.0 50776500.0 False True 44276718.70247589 47382619.89046921 48049342.7403945 47069478.90818775 48265928.746488854 46895952.87323299 48642372.17173767 48511316.310224205 48959842.97313633 47535900.2980512 0.9314374698882284 0.9967754811285593 1.01080115111156 0.990188018172813 1.0153574128997318 0.9865375974620082 1.0232765523898542 1.0205195653402401 1.0299551005904375 1.0 25.502514148587498 5.944591761440551 1.1251772869049994 1.011629428219141 7.506813045231515e-11 0.7495509455698104 0.013427567672368653 10.372618060619681 1.2388265909266698 0.00392727494881672 22.668642817769186 880221.0726531453 -5.944591761440551 -1.0116294281440728 LSLCEDS(ph)PMVTLTVDNVHLEHGVVYEYVSTAGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSLCEDSPMVTLTVDNVHLEHGVVYEYVSTAGVR 34 0 Q8TCU6;Q8TCU6-3;Q8TCU6-2;H0YDZ4 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 1 LS(0.381)LCEDS(0.619)PMVTLTVDNVHLEHGVVYEYVSTAGVR 125.97 1.201e-07 52479000.0 17613.0 16867.0 18336.0 19173.0 18464.0 17686.0 19816.0 18050.0 20866.0 18490.0 True False 17518.173564988258 17428.407898683192 20917.54942063094 21600.299834148012 20815.280955297858 16463.40844836584 18857.424375528804 19396.98265604283 15723.85389007517 17309.95236991457 1.0120289871759316 1.006843203622819 1.2084117260187572 1.247854377213091 1.2025036528393747 0.9510949595089553 1.089397819967651 1.1205682281226612 0.9083707195753984 1.0 14.07931413453808 2.7456971216619497 24.991390732249258 1.0357673596206172 1.1386686167656654 0.27958656489220113 0.0943515366801889 965.359319186121 3380600.417360183 0.031788876372218625 0.033049612306156655 556.7973013056575 -2.7456971216619497 0.10290125714504827 LSLCGEESFGTGSDHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLCGEESFGTGSDHIR 17 0 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 ; 205.68 7.6665e-12 348440000.0 338410.0 361960.0 352930.0 375290.0 331650.0 452740.0 408710.0 349460.0 415450.0 374090.0 False True 336588.038160886 374007.6197905593 402619.47627744754 422801.6755206489 373883.66165644134 421443.14943532407 388939.1358761797 375538.4797219242 313067.91424478695 350215.2559254373 0.9610890230108861 1.0679364004353582 1.1496343162251257 1.2072623004483436 1.0675824520221449 1.203383183070276 1.1105716535632213 1.0723075975932879 0.8939299729176868 1.0 18.417882405634263 1.396919873423479 4.32934310538418 0.948943787821129 1.1136508994747134 0.43996118425938036 0.07189056094883244 0.19272150358814732 5.798820946683167 0.052660942391308516 0.01849134011183885 24.941345210097094 -1.396919873423479 0.16470711165358443 LSLDELHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSLDELHR 8 0 P05023-4;P05023;P05023-3;P05023-2;Q5TC02;Q5TC01 P05023-4 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 0 ;; 153.08 0.00044675 610170000.0 433154.0 604280.0 623220.0 513426.0 668690.0 943210.0 591890.0 472023.0 681870.0 611800.0 False True 430821.9469919337 624393.0945050259 710963.9588746522 578425.678957247 753843.7078638498 878008.1127775162 563258.0194606245 507247.75314422685 513832.2750898854 572754.4002116675 0.7521931683680104 1.0901585291606224 1.2413068474234468 1.0099017637288925 1.316172704365534 1.532957428966131 0.9834198030647455 0.8856287318906114 0.8971249717156135 1.0 19.12755711157945 2.018381983162982 24.99989180866711 0.9197884106053296 1.166749525025531 0.23298672171122092 0.19298525789826565 333.2012927095395 453159.08051042754 0.07531506306591383 0.05561489269551062 104.32346016614584 -2.018381983162982 0.24696111442020152 LSLDGNPK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSLDGNPK 8 0 B8ZZZ7;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3;F8VT91 B8ZZZ7 SPATS2L SPATS2-like protein 0 ;;; 89.29799999999999 0.014004 6127010000.0 5028820.0 12441700.0 12050400.0 13424700.0 12753200.0 7826200.0 8880200.0 7870100.0 3775590.0 9577100.0 False True 5001745.391874427 12855814.463333521 13746991.576045526 15124265.643534508 14377244.42586139 7285193.21489318 8450630.800341683 8457406.825558038 2845146.434814002 8965881.278632173 0.557864334406789 1.4338595464086707 1.53325603460843 1.6868688278952821 1.6035506136051323 0.8125462504456229 0.9425320877805448 0.9432878445216589 0.3173303712591714 1.0 23.096013965449046 2.7255665266679525 24.22092383409015 0.8232836841691235 1.3944545760777791 0.3998849030566559 0.3414502930305029 532.547185826317 992663.4129662297 0.11188448301915342 0.1061355074634186 531.5774220613135 -2.7255665266679525 0.5711708919086557 LSLEEETLWLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSLEEETLWLR 11 0 Q14CX7;Q14CX7-2 Q14CX7 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit 0 ;; 185.81 1.0009e-05 109684000.0 52545.0 59448.0 55191.0 56186.0 55265.0 54508.0 60877.0 49465.0 69231.0 58123.0 False True 52262.10355829829 61426.690742925144 62961.41307122827 63299.14183911961 62302.67016868154 50739.99025803037 57932.14693727627 53156.32947818053 52169.94769787188 54413.54037839615 0.9604613703659678 1.12888612495638 1.1570909121771809 1.1632976167132716 1.1449846809346302 0.9324883090712418 1.064664172454346 0.9768952563741878 0.9587677503628298 1.0 15.731678078930257 2.747237074245923 24.991063655506903 0.9909822695499415 1.1174131574115553 0.49354424379421113 0.06274830678604339 539.7974194959988 1554795.1836781506 0.019394972225165442 0.020285898247641057 558.7751376950731 -2.747237074245923 0.12643088786161383 LSLEEFIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSLEEFIR 8 0 P37235;P61601;P84074 P37235 HPCAL1;NCALD;HPCA Hippocalcin-like protein 1;Neurocalcin-delta;Neuron-specific calcium-binding protein hippocalcin 0 81.89 0.051434 0.0 79734.0 79609.0 89514.0 78839.0 82633.0 110630.0 111640.0 103260.0 123380.0 109020.0 False True 79304.72100328018 82258.73744034325 102116.79313036407 88820.00931645515 93155.82274583666 102982.40849500807 106239.54669378462 110965.78554365541 92974.65220729781 102062.25026328227 0.7770230501356161 0.8059663316078824 1.000534407843655 0.8702532923518038 0.9127353404959192 1.0090156569089173 1.040928907796237 1.0872363215332346 0.9109602420822402 1.0 16.63908983008916 5.267413271899596 0.4219746442567099 1.0288617104170923 0.44058800597784714 0.5773220942766245 0.06331714133456605 5.599459869489208 0.558530358003595 0.04740679496038468 1.8120343778635233 185102.92089242226 -5.267413271899596 -0.5882737044392452 LSLEGDHST(ph)PPSAYGSVK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSLEGDHSTPPSAYGSVK 18 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YMW4;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YNB8;H0YKN4;H0YMD9 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 LSLEGDHS(0.006)T(0.994)PPSAYGSVK;LSLEGDHS(0.073)T(0.927)PPSAYGSVK;LSLEGDHS(0.138)T(0.862)PPSAYGSVK;LSLEGDHS(0.053)T(0.947)PPS(0.001)AYGSVK 160.77 1.4626e-10 1178040000.0 920540.0 1162500.0 1268810.0 953660.0 1198590.0 1733170.0 1338090.0 1459450.0 2180760.0 1473170.0 True False 915583.914921608 1201193.1097539105 1447447.4193057772 1074393.2582190367 1351223.331900479 1613360.037343333 1273361.474699805 1568361.5699369356 1643340.918686874 1379151.0293557104 0.6638750183504818 0.8709656043363608 1.049520602527464 0.7790250925027077 0.9797500804039727 1.1698211457646062 0.923293713013196 1.1371934882792478 1.1915597956335382 1.0 20.39534902281977 5.737070708914782 0.3849939584337848 1.1003163753235683 1.149272199889861e-18 0.5347768192905719 0.11125108449535881 9.852274087578856 0.6390369384786837 0.08738844026401814 5.838384542661959 545846.7249597941 -5.737070708914782 -1.1003163753235683 LSLEGDHSTPPSAYGSVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLEGDHSTPPSAYGSVK 18 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YMW4;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YNB8;H0YKN4;H0YMD9 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 179.46 8.357300000000002e-14 1120790000.0 491630.0 724480.0 749950.0 637240.0 705020.0 1043610.0 824270.0 814450.0 1026550.0 856220.0 False True 488983.11870522774 748593.8788425924 855536.4413177437 717914.5186623109 794800.1180190695 971467.6970936942 784396.9110828183 875228.3946933013 773570.5075652574 801575.306553177 0.6100276726436162 0.9339033684328326 1.0673188586567155 0.8956295344842737 0.9915476581193087 1.211948134069979 0.9785692057503282 1.091885425533924 0.9650627972706122 1.0 19.61247853977881 4.731261259672751 2.535663626740628 1.0303730922199592 0.5227169506920499 0.7001102361231504 0.08132349957834824 0.26285584536171447 2.1718943831431985 0.019999254903786727 0.2849409433138367 53859.36883005218 -4.731261259672751 -0.5076561415279093 LSLFSDGDS(ph)SESEDTLSSSER ddPTM_BT-474_Trastuzumab_2h_R1 1 LSLFSDGDSSESEDTLSSSER 21 0 M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63;M0QZ79 M0QXD7 VRK3 Inactive serine/threonine-protein kinase VRK3 1 LSLFSDGDS(0.634)S(0.363)ES(0.003)EDTLSSSER 130.01 2.1877e-06 0.0 103610.0 101840.0 95768.0 98829.0 103030.0 130860.0 120640.0 124440.0 157980.0 118380.0 True False 103052.17527215318 105229.68283642002 109251.30196962178 111340.74126683421 116150.259793346 121813.95621130579 114804.1823104457 133726.34469351626 119047.9458235443 110824.88704978308 0.9298649248869674 0.9495131070077277 0.9858011578260898 1.0046546784822745 1.0480521377943814 1.099157052662606 1.0359061521883175 1.2066454408696643 1.0741986659554852 1.0 16.7579223665786 3.386261443743271 0.9053076553025972 1.1073198231516204 0.933897793740763 0.5269842355871155 0.052462939962097194 0.4224092267521282 0.7274064801503471 0.023073658044541086 0.04729466678677359 2433.6686280951626 -3.386261443743271 -0.17342202941085738 LSLPEDFYHFWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLPEDFYHFWK 12 0 Q9NWY4 Q9NWY4 C4orf27 UPF0609 protein C4orf27 0 ; 134.13 0.00015092 207500000.0 349890.0 477820.0 455130.0 456130.0 435170.0 504360.0 506050.0 432580.0 499790.0 513490.0 False True 348006.23111643334 493723.9498517104 519208.3479391223 513876.01123193745 490586.3200453303 469494.7803357341 481570.42820126907 464861.3161967319 376623.4513428859 480718.6285790929 0.7239291561158538 1.027053915740812 1.080067043529803 1.06897461567248 1.0205269587646402 0.9766519382106447 1.0017719297142569 0.9670133183121443 0.7834592398803198 1.0 18.874833185626244 -0.7123802306685637 7.569172556135588 1.0000022624205815 0.9733836113982276 0.0 0.11170404779212512 0.0 8.22280189553353e-26 0.10543765579937261 0.024851893802716497 0.19391873495151074 0.7123802306685637 -0.026618651022353945 LSLPGLLSQVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLPGLLSQVSPR 13 0 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 LSLPGLLS(0.002)QVS(0.998)PR;LSLPGLLS(0.004)QVS(0.996)PR 114.35 0.00078678 288480000.0 343240.0 481700.0 344820.0 505680.0 323500.0 424360.0 423050.0 386400.0 591610.0 448930.0 True False 341392.03397754946 497733.0933062011 393367.65877083084 569699.036151461 364695.8074652762 395024.99203599023 402585.4552920594 415235.1300994435 445815.6426678506 420278.90305169055 0.8122987651739476 1.184292358460316 0.9359681295314748 1.3555261328008965 0.8677471193942417 0.9399115424725606 0.9579006996754843 0.987998986112261 1.0607614120783484 1.0 18.68098751306658 LSLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLSPK 6 0 Q5FBB7-6;Q5FBB7;Q5FBB7-5;Q5FBB7-4;Q5FBB7-3;Q5FBB7-2 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 LSLS(1)PK;LS(0.001)LS(0.999)PK 95.741 0.045106 283550000.0 1018890.0 953840.0 830790.0 752300.0 766420.0 1218060.0 1138750.0 1078030.0 2057500.0 1163950.0 True False 1013404.4094493221 985587.9877915443 947758.0106438678 847541.1028649443 864019.0440727562 1133858.3792048234 1083664.3120525556 1158478.0727254201 1550456.6940874956 1089665.714492269 0.9300140363886911 0.9044865546226533 0.8697695064081893 0.777799183357675 0.7929211982918511 1.040556167019668 0.9944924371209478 1.0631499709662924 1.4228737065568156 1.0 20.05545418504939 2.004139692951622 1.290645076082699 1.1875346889273832 0.8628102542436348 0.5442579027483796 0.1176205408015132 0.33339115597356755 1.0312289249686173 0.08343968238552738 0.039113372410214425 100.95775694361045 -2.004139692951622 -0.32472443468374845 LSLS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSLSPLR 7 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR 154.28 0.001772 422454000.0 431697.0 681150.0 1030300.0 399740.0 126162.0 251161.0 485522.0 202915.0 1244550.0 373381.0 True False 429372.7913180457 703821.6659861295 1175357.2844718618 450347.0430137341 142227.98287924004 233798.83123939915 462035.4459858446 218057.5476814919 937847.328615596 349551.50491244305 1.2283534337109965 2.0134991727826357 3.3624723909178122 1.2883567562569604 0.40688705635773426 0.6688537395882816 1.3217950416250588 0.6238209380220284 2.683001833593912 1.0 18.415145520615972 3.500613329164222 24.35510936590917 1.0424756999720666 2.2064421817407722 0.28755762495174364 0.7629074666006297 630.3846047403165 653541.2948403045 0.1997110179763106 0.3070911079131176 3166.746718317848 -3.500613329164222 1.1639664817687057 LSLSPALQDALHTFPQLQVEQSGEGS(ph)PEEGAVR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSLSPALQDALHTFPQLQVEQSGEGSPEEGAVR 33 0 Q9ULL5;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 LSLSPALQDALHTFPQLQVEQS(0.042)GEGS(0.958)PEEGAVR;LSLSPALQDALHTFPQLQVEQSGEGS(1)PEEGAVR;LSLSPALQDALHTFPQLQVEQS(0.049)GEGS(0.951)PEEGAVR 294.93 8.411299999999996e-90 1457550000.0 332395.0 376516.0 372175.0 388191.0 361835.0 404627.0 399940.0 333170.0 405310.0 395730.0 True False 330605.4222525563 389048.1074512714 424574.00499690813 437335.9407978798 407912.54248593 376656.0878795051 380593.374280833 358032.83720298 305426.78137574834 370474.1725985014 0.8923845350235723 1.0501355728052313 1.1460286206159829 1.1804761927947927 1.1010552763363675 1.016686494601348 1.0273141893032804 0.9664178063797052 0.8244212524546275 1.0 18.499013443788844 1.8336135791521162 1.6357911389208644 0.9129729372098558 1.0762174041051709 0.3432460280448143 0.08382244990971986 0.40350016689560697 2.051672125872312 0.06219857586152391 0.026566470062115294 68.1731841786579 -1.8336135791521162 0.16324446689531502 LSLTSDPEEGDPLALGPES(ph)PGEPQPPQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSLTSDPEEGDPLALGPESPGEPQPPQLK 29 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 LSLTSDPEEGDPLALGPES(1)PGEPQPPQLK;LSLTSDPEEGDPLALGPES(1)PGEPQPPQLK 129.63 9.9634e-06 104139000.0 91851.0 93773.0 81539.0 80134.0 77438.0 115192.0 106469.0 103780.0 147621.0 126897.0 True False 91356.48442160538 96894.17761802448 93018.9824503067 90278.95618367582 87299.27028901406 107229.04817280087 101318.68771892277 111524.59058416214 111241.78257005586 118798.32481801238 0.7690048202409818 0.8156190566361693 0.7829991087231478 0.7599345893300643 0.7348527045541102 0.9026141432302642 0.8528629328244591 0.9387724174983705 0.9363918450909774 1.0 16.858154967193457 2.003069208914162 0.871232198912146 0.9819441294322785 0.7745586020594277 0.8264946582474731 0.03588478836296952 0.23459534176341995 0.3296746068110442 0.030134704746622883 0.014894027536504009 100.70921456789493 -2.003069208914162 -0.20738552737285076 LSMEDSKS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 7 LSMEDSKSPPPK 12 1 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 LSMEDSKS(1)PPPK;LSMEDSKS(1)PPPK;LSMEDS(0.001)KS(0.999)PPPK;LSMEDS(0.001)KS(0.999)PPPK;LSMEDS(0.001)KS(0.999)PPPK;LSMEDSKS(1)PPPK;LSMEDS(0.004)KS(0.996)PPPK 178.85 1.2999e-05 11797060000.0 7536590.0 5419820.0 5012340.0 4656450.0 4699380.0 7129490.0 7066500.0 6752940.0 11239900.0 6722490.0 True False 7496013.836833858 5600215.43234962 5718033.903959714 5245956.092563427 5297818.18759248 6636645.137314246 6724666.398348514 7256878.673534502 8469977.251943635 6293454.932786744 1.1910808795630194 0.8898475467226145 0.9085683404469485 0.8335574257048848 0.84179806547794 1.054531288170445 1.0685174471203895 1.1530834416130717 1.3458390252098185 1.0 22.585420803598016 2.208952303175404 1.7692107810779032 1.1767524099333442 0.9269676828628268 0.3840563942840518 0.12464003645540815 0.3425285998452429 2.1256191097629853 0.06525230968473297 0.0398088995419533 161.79023401473046 -2.208952303175404 -0.24978472707051735 LSMLS(ph)QEIQTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSMLSQEIQTLK 12 0 F8W6C0;G3V0F5;Q9UHY8;Q9UHY8-2;Q7Z674 F8W6C0 FEZ2;DKFZp779C2259 Fasciculation and elongation protein zeta-2 1 LSMLS(1)QEIQTLK;LSMLS(1)QEIQTLK 242.01 2.9706e-16 49852000.0 101149.0 78090.0 68427.0 71435.0 70681.0 94223.0 81234.0 89910.0 121884.0 83456.0 True False 100604.42502271042 80689.17844359812 78060.92682185395 80478.66367560446 79681.80639089085 87709.58578708433 77304.40107598444 96619.54075372913 91847.3213619247 78129.76662972376 1.287658076588141 1.0327584725294785 0.9991189042174405 1.0300640478937138 1.0198648969287543 1.1226142041708853 0.9894359654541024 1.2366546698089216 1.1755739883009226 1.0 16.2535846844776 1.7400541763542183 24.999999957482505 1.1586430476015144 1.0634211356064212 0.07773398876952542 0.09944080777474076 0.41415785045325293 6965.570535960714 0.0441710600280177 0.024495307638366583 54.96094309757298 -1.7400541763542183 -0.09522191199509322 LSMPQSAAVST(ph)TPPHNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSMPQSAAVSTTPPHNRR 18 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 LSMPQSAAVS(0.085)T(0.458)T(0.458)PPHNRR;LSMPQSAAVS(0.045)T(0.57)T(0.386)PPHNRR 98.035 0.00098816 326820000.0 186595.0 225403.0 211041.0 248400.0 217710.0 213202.0 241000.0 166117.0 256170.0 240820.0 True False 185590.39325265327 232905.4025960093 240753.73839874435 279847.4145309741 245434.07803173168 198463.84756352426 229341.9092905954 178513.49406503406 193040.33600213513 225450.66142362496 0.8231973775580383 1.0330659538779388 1.0678777204665844 1.2412800777068331 1.0886376490621936 0.880298360227952 1.0172598644971758 0.7918073645816665 0.8562420477419209 1.0 17.782452216974605 2.7362668861794157 24.860253693346895 0.8967906126488356 1.0613555631419962 0.27510544910810886 0.11348215307032525 234.28068609488702 2539202.013479049 0.03753257374658639 0.03700629362326737 544.8373678793146 -2.7362668861794157 0.16456495049316056 LSMPQSAAVSTT(ph)PPHNR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSMPQSAAVSTTPPHNR 17 0 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 LSMPQSAAVST(0.001)T(0.999)PPHNR;LSMPQSAAVSTT(1)PPHNR;LSMPQSAAVS(0.001)T(0.248)T(0.751)PPHNR;LSMPQSAAVS(0.001)T(0.017)T(0.982)PPHNR 194.99 1.5855e-10 3186990000.0 992170.0 1038000.0 993020.0 939240.0 963120.0 1127700.0 1012740.0 908460.0 1082010.0 1038850.0 True False 986828.26696045 1072549.2025157502 1132828.58451543 1058147.6876975535 1085767.6231405146 1049744.753320263 963749.8971575007 976253.8982664085 815363.1336911835 972549.7035957682 1.014681577005155 1.1028219931076613 1.1648027656859792 1.0880139943339733 1.116413504755747 1.07937388643386 0.9909518182919266 1.0038087458738045 0.8383768260651099 1.0 19.891412457490652 1.9842975565015066 1.4412846095201495 0.932972528171819 1.101776311471297 0.6093563936503983 0.05442491094486003 0.265612185449124 1.0269511356420336 0.03656244594406716 0.01715106573882681 96.44896165509172 -1.9842975565015066 0.1688037832994781 LSMWDRPDDLIGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSMWDRPDDLIGR 13 1 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 ;; 239.38 7.5564e-17 879720000.0 804749.0 1042860.0 898780.0 949300.0 881220.0 943450.0 955320.0 901250.0 1112770.0 1002490.0 False True 800416.3208000197 1077570.9646778165 1025320.4116641944 1069481.2826660783 993438.1435998473 878231.5221424153 909107.5219232015 968505.8514547707 838542.7438540665 938510.229925131 0.8528583869180332 1.1481717836616219 1.0924978534820966 1.139552077926093 1.0585267074596494 0.935771922499423 0.9686708710630942 1.031960889261732 0.8934827955162095 1.0 19.84001294520614 2.826534595405942 6.478527560562371 0.9736623059182573 1.0705806649997922 0.22346211385018355 0.08408999430126503 0.3589713938709482 22.08842700808263 0.02511681581575804 0.026666159903560176 670.7097125494507 -2.826534595405942 0.0969183590815349 LSNLALVKPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSNLALVKPEK 11 1 O14737;K7EQA1;O14737-2 O14737 PDCD5 Programmed cell death protein 5 0 101.6 0.0024751 0.0 166000.0 169440.0 160870.0 147220.0 165160.0 212580.0 183930.0 179450.0 267470.0 211600.0 False True 165106.2744443339 175079.70797135722 183519.0976928935 165858.03690519338 186192.14701998467 197884.84495949376 175032.60321916695 192841.47022863646 201555.60241437767 198095.50684012586 0.8334680431575052 0.8838146344866687 0.9264172651881684 0.8372629927394066 0.9399110055042901 0.998936564064514 0.8835768463967637 0.9734772550104849 1.0174668049237698 1.0 17.595836632135274 3.565880474011141 0.2765737558868006 1.0149757466153517 0.7892844150315652 0.5840281864799133 0.04155235777902278 3.3810951854945097 0.361868800368703 0.058603780062759396 0.2516142743293456 3680.27671583575 -3.565880474011141 -0.22569133158378651 LSNRPAFMPSEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSNRPAFMPSEGK 13 1 O43707;O43707-2;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 134.88 5.6874e-06 0.0 1094900.0 1077700.0 927960.0 882840.0 701940.0 1063900.0 1102800.0 1009300.0 1409700.0 1033300.0 False True 1089005.1800548253 1113570.593016592 1058608.702027087 994607.4534803766 791327.8982756595 990355.0971512154 1049453.3508948905 1084619.091121552 1062298.32401222 967353.9093473614 1.1257567365283483 1.1511511787530562 1.0943344434730118 1.0281732919768756 0.8180334938735501 1.0237774278695706 1.084870119151034 1.1212226266323824 1.0981485821760042 1.0 19.883684275048708 3.9323113876877076 3.543736740272926 1.0310424311160398 1.1367134322315857 0.2560098416764244 0.07896387424377203 0.390728088869616 9.549707603892884 0.02373047641264821 0.04872486367327964 8556.800126921951 -3.9323113876877076 0.10567100111554595 LSPDGHFGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPDGHFGSK 10 0 Q8TAT6;Q8TAT6-2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 ; 113.63 0.0014628 406190000.0 654420.0 1008910.0 1095200.0 1112760.0 1089750.0 1266090.0 1239040.0 1244240.0 1295930.0 1355550.0 False True 650896.6754328974 1042490.9594510249 1249394.6403509497 1253635.3019061473 1228523.2030457023 1178568.1783552796 1179102.9016075504 1337091.5069226988 976565.4160723226 1269037.638455256 0.5129057292778215 0.821481513125177 0.9845213431744887 0.9878629789358674 0.9680746778646613 0.9287101837183483 0.9291315449420562 1.0536263593807051 0.7695322711318894 1.0 20.275303428107197 4.682071608454537 2.3738738323174506 0.9591265360874867 0.4379892841369355 0.7766549256652548 0.07129842759507889 0.20040875813514 1.499085217944764 0.016956736489549158 0.20383266447403034 48091.86379707333 -4.682071608454537 -0.5211372519505512 LSPFFTLDLS(ph)PTEDK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSPFFTLDLSPTEDK 15 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 LSPFFTLDLS(0.982)PT(0.018)EDK;LSPFFTLDLS(0.998)PT(0.002)EDK;LSPFFTLDLS(0.98)PT(0.02)EDK;LSPFFTLDLS(0.974)PT(0.026)EDK 216.29 2.3345e-12 360523000.0 637489.0 525830.0 448426.0 431626.0 417161.0 573108.0 534926.0 469463.0 711536.0 492311.0 True False 634056.8300556857 543331.9336790523 511560.4830113355 486269.8073443894 470283.9806430353 533490.3929111188 509049.5857642372 504496.7129448103 536187.4868939188 460891.2904913474 1.3757188368209994 1.1788722088886003 1.1099374051220856 1.055063997468875 1.0203794047435233 1.1575189289048506 1.1044894886634746 1.0946110793436257 1.16337083810436 1.0 18.814066979616985 4.734875730506518 1.8768601831938356 1.0905403111664072 1.4650336239430832 0.7575620575009819 0.0495605697284385 0.3814895968568998 1.397453505419576 0.012513560154839643 0.24997142735056424 54309.490749178476 -4.734875730506518 0.3744933127766761 LSPFFTLDLS(ph)PTEDKSSKPSSFTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPFFTLDLSPTEDKSSKPSSFTEK 25 2 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 LSPFFTLDLS(0.866)PT(0.134)EDKSSKPSSFTEK;LSPFFTLDLS(0.996)PT(0.004)EDKSSKPSSFTEK 162.07 1.0377e-11 353180000.0 813880.0 695850.0 590030.0 635150.0 598870.0 847890.0 821470.0 732640.0 1444040.0 843620.0 True False 809498.1605105689 719010.9465997926 673101.0953673034 715559.924876603 675132.5447194128 789277.3600183699 781732.3577798567 787313.3170705385 1088175.6911446427 789779.4493405813 1.024967364226116 0.9103946009232372 0.852264636575822 0.9060249990982328 0.8548368095461437 0.9993642664130719 0.9898109635956678 0.9968774418325245 1.3778222414538697 1.0 19.591090302705872 1.42807887844319 5.4062319943141075 1.193767962712763 0.933666863548162 0.49320325938827225 0.10129902746449204 0.14362356955404212 7.652434773496661 0.064111411869694 0.024230570522758156 26.796549711562154 -1.42807887844319 -0.2601010991646011 LSPFVLSAGSGS(ph)PSATSILQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPFVLSAGSGSPSATSILQK 21 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-4 SYNRG Synergin gamma 1 LSPFVLSAGS(0.049)GS(0.89)PS(0.059)AT(0.001)SILQK;LSPFVLSAGS(0.002)GS(0.978)PS(0.02)ATSILQK 290.57 1.0845e-54 1008580000.0 1667550.0 1487170.0 1479270.0 1399060.0 1437450.0 1857930.0 1739960.0 1602370.0 2355500.0 1862250.0 True False 1658572.0960822236 1536669.5544367523 1687538.3579546644 1576180.8525511476 1620500.7370663416 1729495.6721967857 1655791.487507323 1721946.9860699917 1775018.5870829136 1743399.6106475613 0.9513436196456246 0.8814213018356578 0.9679584345713212 0.9040846647692535 0.9295061942020449 0.9920248126901834 0.9497486849227312 0.9876949470181416 1.0181363906715615 1.0 20.733471861806606 2.2553439258955525 0.7646476231238849 1.0069944501497894 0.9221929394652114 0.5640022899080519 0.027395828836271265 0.4700259977610944 0.5287969636700486 0.021200015903595066 0.013227325668956137 180.02960387542842 -2.2553439258955525 -0.08480151068457797 LSPLEACAHSFFDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPLEACAHSFFDELR 16 0 P49840;A8MT37 P49840 GSK3A Glycogen synthase kinase-3 alpha 0 ; 270.75 3.9067e-35 164520000.0 69656.0 177042.0 169687.0 208855.0 174482.0 119708.0 125077.0 91515.0 71793.0 133525.0 False True 69280.97983550908 182934.73594585122 193577.45465415588 235296.02158561448 196701.24846416194 111432.86772232152 119026.54766945976 98344.31400375391 54100.57712691305 125003.32018349618 0.5542331174388762 1.4634390164782483 1.5485785047148959 1.8823181755509877 1.573568191432181 0.8914392638431189 0.9521870898687896 0.7867336152303098 0.4327931213946731 1.0 16.931606888913382 2.653837267014703 4.861062703722524 0.80000610574024 1.4413741069411738 0.41842157547285386 0.34825453075126644 0.220763866306259 9.085633648579563 0.11840005598566945 0.11172131053027834 450.6478122156909 -2.653837267014703 0.6413680012009338 LSPPYSSPQEFAQDVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPPYSSPQEFAQDVGR 17 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 180.84 1.9477e-09 141710000.0 37988.0 53835.0 39138.0 33296.0 39176.0 45070.0 48597.0 44235.0 55663.0 51662.0 False True 37783.47682886356 55626.86543105527 44648.29020640564 37511.27018608421 44164.83138565582 41954.4169833681 46246.17745143184 47536.040320778615 41945.59949598646 48364.88692993656 0.7812171024735014 1.150149808302844 0.9231550622889919 0.7755889151653479 0.9131589917626579 0.8674561163379759 0.9561932299857544 0.9828626373021683 0.8672738045836982 1.0 15.561672405637285 -0.16648465479862984 7.915907836321656 0.99999999798186 0.9214478432962241 0.05592901469607303 0.10205128510500334 0.0 0.0 0.09553123617656094 0.0225169283051933 0.6815776569153033 0.16648465479862984 -0.07855215468563592 LSPS(ph)FR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSPSFR 6 0 B4DF95;Q15735 B4DF95 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 1 LS(0.131)PS(0.869)FR 147.06 0.011476 378730000.0 426990.0 433000.0 421160.0 439430.0 384700.0 458680.0 463880.0 383560.0 478920.0 406740.0 True False 424691.1332830485 447412.14324597246 480455.66721165605 495061.79294422694 433689.2647044569 426972.53121657996 441440.35220631334 412183.1948782152 360896.58319921367 380781.50497236603 1.1153144985701684 1.174983914406352 1.2617620891185972 1.3001203747544263 1.1389451930863357 1.1213058555655588 1.1593009283325078 1.0824664262727992 0.9477786564906941 1.0 18.538603881305768 1.6390549356581772 1.1062039176108567 0.9692630243245672 1.1990592060447052 0.6714346667870595 0.057868059758132466 0.29123526037947123 0.6752845034323214 0.05416614422377471 0.020404325011187295 43.55669668209383 -1.6390549356581772 0.22979618172013794 LSPS(ph)PSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 LS(0.005)PS(0.876)PS(0.118)S(0.001)R 121.5 0.0015005 666160000.0 408230.0 473920.0 449990.0 430920.0 480950.0 513890.0 512300.0 461690.0 540580.0 527960.0 True False 406032.1350386173 489694.1407093099 513344.68061680364 485474.427816777 542196.1316860111 478365.9938669412 487518.09182395035 496143.6522143166 407361.3024008831 494265.14079070254 0.8214864887883169 0.9907519270445005 1.0386018317933134 0.9822145802961897 1.0969742491219 0.967832756932187 0.9863493327569924 1.0038006148291359 0.8241756676370203 1.0 18.914925635048032 -0.27471847233793817 6.519680705666463 0.999999999163242 0.9778323119739628 0.0008058237319734651 0.08183832889464236 0.0 0.0 0.0757935390653522 0.0178647083479769 0.5312286970726721 0.27471847233793817 -0.022167687189279195 LSPS(ph)PTSQR ddPTM_BT-474_Trastuzumab_2h_R1 7 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 LSPS(1)PTSQR;LSPS(1)PTSQR;LSPS(0.994)PT(0.006)SQR;LSPS(1)PTSQR;LSPS(1)PTSQR;LSPS(1)PTSQR;LS(0.001)PS(0.996)PT(0.002)S(0.001)QR 245.4 1.3529e-10 36514260000.0 6031940.0 6549090.0 5694370.0 6086130.0 5691370.0 6352560.0 6777840.0 5799680.0 7314920.0 6478580.0 True False 5999464.705251536 6767072.501641496 6496087.799648678 6856633.43397504 6416132.23410711 5913422.479517752 6449969.985336801 6232481.571778308 5512255.9809061885 6065111.477808615 0.9891763287785771 1.1157375303654775 1.0710582688243975 1.1305041068185624 1.0578754005730695 0.9749899076305734 1.0634544820711587 1.0275955511423123 0.9088466058826377 1.0 22.532102731900565 2.925886610562562 5.885108455691343 1.005431993203207 1.0808150705196105 0.35985062346581775 0.05132875840642151 0.26557264845189293 16.240519198708427 0.01551241156405115 0.016620843387553725 843.1146012219234 -2.925886610562562 0.07538307731640348 LSPS(ph)PTTEDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSPSPTTEDPR 11 0 Q9BTC8;F6RRE2;E7EV10;E7EQY4;Q9BTC8-2 Q9BTC8 MTA3 Metastasis-associated protein MTA3 1 LSPS(1)PTTEDPR;LSPS(0.988)PT(0.011)TEDPR;LSPS(0.965)PT(0.024)T(0.011)EDPR;LSPS(0.998)PT(0.002)TEDPR 198.97 5.4381e-08 2725310000.0 1374350.0 1604910.0 1441870.0 1411920.0 1432030.0 1605620.0 1563390.0 1448360.0 1630850.0 1494320.0 True False 1366950.6523046393 1658328.4591614164 1644872.7630412916 1590668.927232581 1614390.5321931995 1494627.268622932 1487762.852970224 1556443.977823058 1228948.869770395 1398951.2182482814 0.9771253167900221 1.1854083527214896 1.1757899357641253 1.1370438843638608 1.1540005906815562 1.068391269921801 1.063484440031547 1.112579164677367 0.8784787158691942 1.0 20.415914225595024 1.251335584095908 24.921457442825513 0.9392393799501692 1.1126937237038006 0.5251736256508259 0.06458678391284857 138.30542504572873 269810.1389957095 0.04271694838823612 0.01537360718058108 17.837565632654027 -1.251335584095908 0.17345434375363145 LSPSPS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 LSPS(0.494)PS(0.506)SR 131.62 0.0010463 568920000.0 410600.0 494200.0 465160.0 457380.0 473150.0 514000.0 480790.0 417420.0 527440.0 571140.0 True False 408389.3752219484 510649.1482497916 530650.4847568003 515284.26110377227 533402.8479202335 478468.38982585276 457532.3509038395 448570.00001581147 397459.47933390434 534689.3562224454 0.763788114480527 0.9550389255127563 0.9924463215535475 0.9637077213285689 0.9975939145089758 0.894853028693537 0.8556975103007166 0.8389357199569802 0.7433465332879197 1.0 19.028341432493836 2.3978681775981214 3.444286308954424 0.8454592131770728 0.9410141421953854 0.13514755538591416 0.08521730868428999 0.3743423587569519 8.9112953688701 0.030604667099900132 0.02522704745996143 249.95865412933577 -2.3978681775981214 0.09555492901831253 LSPT(ph)SLVHPVMSTLPELSCK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSPTSLVHPVMSTLPELSCK 20 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 LS(0.115)PT(0.727)S(0.158)LVHPVMSTLPELSCK 206.85 2.6679e-21 868930000.0 1938400.0 1801100.0 1809200.0 1567500.0 1502500.0 1953300.0 1702000.0 1765300.0 2340400.0 1782300.0 True False 1927963.8697764883 1861048.524712059 2063919.6341516972 1765945.3392806062 1693834.4689847834 1818272.9685736168 1619667.7577286044 1897035.6500117693 1763639.7797532806 1668552.0880962003 1.1554711917781806 1.1153673523225127 1.2369524744694107 1.0583699195723224 1.0151522874646546 1.0897310198138594 0.9707025446095768 1.136935228780461 1.0569881469901095 1.0 20.670165293941565 3.6493386278212383 8.962162630128947 1.053094174649806 1.163731698751226 0.5334324517953404 0.05217167599255028 0.29593403262515794 27.61637508605692 0.013490197819142813 0.020920208518542895 4460.038707145073 -3.6493386278212383 0.11063752410142014 LSPWIRPDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSPWIRPDSK 10 1 O14744-2;O14744;G3V580;O14744-4;G3V5L5;G3V2L6;G3V2X6;C9JSX3 O14744-2 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed 0 ; 133.42 0.00018024 1799820000.0 2750700.0 3155100.0 2802100.0 2776700.0 2941500.0 3330800.0 3319200.0 3196600.0 4813900.0 3648900.0 False True 2735890.5368314986 3260115.5962017756 3196611.3237101855 3128229.935298535 3316082.589363556 3100549.6358598294 3158637.6154246684 3435146.524005905 3627578.847955185 3416024.078019541 0.8008990786791076 0.9543596654306504 0.9357695527613021 0.9157517230124864 0.9707433301483265 0.9076486479736379 0.9246532059738601 1.0055978662765896 1.0619301167391928 1.0 21.703886713227824 7.999999999997543 0.19419786656985213 1.0245270099384924 0.24883126582636167 0.5412135252905166 0.045214572675958034 45.42064622148224 0.5379811120178584 0.08950403598559724 10.639993215876965 99999999.99943432 -7.999999999997543 -0.7756957441121308 LSQEDPDYGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSQEDPDYGIR 11 0 P04040 P04040 CAT Catalase 0 126.67 0.0023101 0.0 248390.0 327770.0 283640.0 263520.0 300020.0 327410.0 291520.0 283070.0 314840.0 279300.0 False True 247052.69583872362 338679.62630885065 323574.0465569239 296881.6049806856 338225.76864213945 304776.9173402382 277418.0638854539 304194.1208003348 237251.90063985717 261474.83487923956 0.9448431087176068 1.295266622752693 1.2374959399299916 1.1354117696175174 1.2935308623422472 1.1656070745048845 1.0609742387391798 1.1633781925546482 0.9073603612731237 1.0 17.996312578301197 1.2469209573488984 24.897654146887664 0.9536801756252161 1.1672926631276102 0.40123637422475167 0.10166363506622286 142.1147257992363 423236.4997637558 0.06782691637236603 0.023862539169679668 17.6571642675921 -1.2469209573488984 0.21361248750239403 LSQELEYLTEDVKR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSQELEYLTEDVKR 14 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ;;; 249.6 6.1041e-18 656252000.0 534686.0 569447.0 515146.0 511074.0 506823.0 668276.0 670331.0 592105.0 879046.0 675754.0 False True 531807.3099851992 588400.69915702 587674.0790706992 575775.9159984022 571363.9048747258 622079.6530724933 637904.5286169059 636290.8817482674 662416.8919129213 632626.8011778945 0.8406335441290531 0.9300913240815447 0.9289427478831163 0.9101351933341411 0.9031610798197254 0.9833280093638724 1.0083425606205503 1.0057918516312474 1.0470895173577224 1.0 19.270995151233294 2.6027203140197472 2.488908832492384 1.014741509685655 0.9049224016725609 0.8079510397732033 0.02622337686102418 0.126714839388277 1.5419371950316452 0.009465645875215076 0.008657729372159181 400.6086422622309 -2.6027203140197472 -0.10981910801309402 LSQSSQDSS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 8 LSQSSQDSSPVR 12 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 LSQSSQDS(0.001)S(0.999)PVR;LSQSSQDS(0.002)S(0.998)PVR;LSQSSQDS(0.003)S(0.997)PVR;LSQSSQDSS(1)PVR;LSQSSQDS(0.043)S(0.957)PVR;LSQSSQDS(0.255)S(0.745)PVR;LSQSSQDS(0.045)S(0.954)PVR;LSQSS(0.002)QDS(0.197)S(0.801)PVR 238.88 3.9424e-16 23397550000.0 8580980.0 10474300.0 9187580.0 9386840.0 9261220.0 9845170.0 10009500.0 9073020.0 10330330.0 9821300.0 True False 8534780.957116498 10822930.743651953 10481111.404123064 10575212.981545612 10440581.471448412 9164596.570937341 9525302.244996754 9750094.82426204 7784558.59083006 9194496.225562036 0.9282488945276377 1.1771097054303674 1.1399331890510815 1.1501677440624734 1.1355251245220024 0.9967480921312938 1.0359786997916243 1.060427301841221 0.846654172219665 1.0 23.13233909961187 1.9275646609315034 0.981760313998255 0.9509544729790895 1.1088502408086334 0.32583556058307517 0.08346002867976648 0.6280251517495498 1.112885837523951 0.06789860878166439 0.030777217716988107 84.63785744448869 -1.9275646609315034 0.15789576782954384 LSQTSNVDKEEEAVTIEMNEPVQLTFALR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSQTSNVDKEEEAVTIEMNEPVQLTFALR 29 1 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 ; 317.26 2.593799999999999e-92 671450000.0 892060.0 845770.0 749390.0 733040.0 755220.0 1039960.0 1017520.0 952040.0 1398850.0 1056010.0 False True 887257.2480771824 873920.9431712375 854897.5981853512 825842.7888397161 851392.7904603573 968070.0130025172 968298.6702961283 1023086.0591611641 1054122.1611296677 988614.5377043544 0.8974754206401495 0.8839855270594695 0.8647430981244671 0.8353536766284988 0.8611979269871578 0.9792188725551788 0.9794501631997025 1.0348685156267836 1.066262047468397 1.0 19.915048596087235 2.5026567717803636 1.8416121254269093 1.0284626651092093 0.8662815322674214 0.8818331343069419 0.026494967563092522 0.11208737735443157 0.7686392885323111 0.011775497332609299 0.009614680814326038 318.1682005787093 -2.5026567717803636 -0.1621811328417878 LSQYLDSSQVKPLFQFFVPDALNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSQYLDSSQVKPLFQFFVPDALNDR 25 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ; 284.13 1.5772999999999994e-53 735800000.0 464640.0 470030.0 453510.0 419790.0 453450.0 529910.0 509240.0 463400.0 613350.0 561310.0 False True 462138.42986635683 485674.6644108652 517360.26602041506 472935.3709579618 511194.16969128087 493278.5689739643 484606.11571428564 497981.2610975206 462198.11096892605 525486.7152383311 0.8794483599014619 0.9242377596369693 0.9845353859911942 0.8999949137505122 0.9728013189818359 0.9387079723799316 0.922204313946349 0.9476571845810876 0.8795619329011944 1.0 19.00329476649859 4.670085081577059 3.926912857365779 0.9406499153176733 0.8773298029592589 0.2272313382097979 0.03510335258952656 0.2995658742324844 8.082992855778482 0.007696890284531189 0.04577711833359409 46782.6783118982 -4.670085081577059 -0.0633201123584144 LSRPERPDLVFEEEDLPYEEEIMR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSRPERPDLVFEEEDLPYEEEIMR 24 2 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 0 ;;; 140.87 1.6205999999999998e-07 187176000.0 118861.0 141335.0 140647.0 145254.0 138104.0 150673.0 145025.0 133883.0 171241.0 153119.0 False True 118221.06558269869 146039.2500361882 160448.87507436084 163643.14150677205 155690.72579346062 140257.33015609087 138009.58670069952 143874.02930409866 129040.95006184034 143346.81432822888 0.8247205641556957 1.0187826685969756 1.1193054817874952 1.1415889657099012 1.0861122133971337 0.9784474863524777 0.9627670300694062 1.0036778980986811 0.9002010310907109 1.0 17.12915031759959 2.638807158268897 6.901265895306211 0.9709351381614366 1.047143423877048 0.13658213579134226 0.08540057412656736 0.5231572964673042 31.315273550721415 0.02926291619667137 0.02754958323264549 435.3185343183707 -2.638807158268897 0.07620828571561145 LSS(ph)ATANALYSSNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSATANALYSSNLR 15 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 LSS(0.913)AT(0.086)ANALYSSNLR;LSS(1)ATANALYSSNLR;LSS(0.999)AT(0.001)ANALYSSNLR;LSS(1)ATANALYSSNLR 389.78 1.892699999999999e-114 1270280000.0 1699110.0 998870.0 1029090.0 1125110.0 1055130.0 1301670.0 927810.0 1039250.0 1767210.0 1158090.0 True False 1689962.1805488686 1032116.7841203334 1173976.9269893698 1267548.8106398734 1189494.5512545183 1211688.6167015913 882928.2857216067 1116804.1122045708 1331704.7749007829 1084179.7047092682 1.5587472936528046 0.9519794362846001 1.0828250352686517 1.1691316532989124 1.0971378140430061 1.1176086505202711 0.8143744822804733 1.0300913283596755 1.2283063122435876 1.0 20.048172475098404 4.745498207704869 24.76818018707133 1.0511134489365062 1.5587475613362094 0.6524324817649576 0.11036236395790185 453.558137009799 1619219.311572494 0.026926081213381532 0.2687016997269215 55654.23374522391 -4.745498207704869 0.5076341123997032 LSS(ph)GFDDIDLPSAVK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSGFDDIDLPSAVK 15 0 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 LS(0.017)S(0.983)GFDDIDLPSAVK;LS(0.017)S(0.983)GFDDIDLPSAVK;LS(0.026)S(0.974)GFDDIDLPSAVK;LS(0.002)S(0.998)GFDDIDLPSAVK 323.16 8.2817e-57 990030000.0 1654100.0 874070.0 771520.0 772070.0 808290.0 1044420.0 861090.0 929690.0 1666190.0 989860.0 True False 1645194.5093877877 903162.8915635264 880143.3098279447 869813.9828378792 911220.940389825 972221.703700229 819435.7870167596 999068.1886701644 1255579.800302134 926686.287338217 1.7753521681144002 0.974615578005089 0.9497748287136515 0.9386283089785478 0.9833111300342923 1.0491378981044452 0.8842645005252855 1.0781083116486538 1.354913542433675 1.0 19.821721497968213 4.740510197301346 24.97741838848622 1.0170818136910347 1.7753524287207314 0.7715783392322515 0.12265535856428035 77.9913462391853 999126.7421863297 0.029274085030645883 0.19087314625943388 55018.68388307948 -4.740510197301346 0.7582706150296967 LSS(ph)LRAS(ph)TSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 LS(0.439)S(0.561)LRAS(0.946)T(0.045)S(0.009)K;LS(0.438)S(0.562)LRAS(0.963)T(0.031)S(0.005)K 95.57 0.004172100000000001 1569370000.0 4319800.0 2613060.0 2437970.0 2370430.0 2127620.0 3245920.0 2985660.0 3211010.0 4655100.0 3289740.0 True False 4296542.6767749 2700034.1224718713 2781214.9847848825 2670526.1949543343 2398559.795608253 3021537.1904738033 2841232.219471203 3450631.8713783966 3507912.9801442046 3079785.9767118897 1.3950783298786469 0.8766953752268664 0.903054629709765 0.8671142135030764 0.7788072982165655 0.9810867421702221 0.9225420990144981 1.1204128785151615 1.139011933514095 1.0 21.554398666651878 1.7351174956765356 7.84884631446175 1.095472097340309 0.9453766133156057 0.10875449577952612 0.16005304095093006 0.2211608695480944 43.47466126457218 0.07660520708439762 0.040704718029527555 54.33973243809272 -1.7351174956765356 -0.15009548402470319 LSS(ph)PGPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSPGPSR 8 0 Q86VQ6;H0YBI6;H0YBQ0 Q86VQ6 TXNRD3 Thioredoxin reductase 3 1 LS(0.394)S(0.606)PGPSR 85.86200000000002 0.017247 301060000.0 755270.0 676610.0 655230.0 609860.0 602180.0 703800.0 715920.0 680920.0 878440.0 769050.0 True False 751203.7102383854 699130.554830618 747480.6886387436 687068.2134696459 678864.0535995062 655147.9625669955 681288.2145200138 731733.7080417008 661960.2324929368 719968.5705831693 1.0433840322084 0.9710570480379821 1.038212943147351 0.9543030648034061 0.9429079008957727 0.9099674476572365 0.9462749380409414 1.0163411820171564 0.9194293466960006 1.0 19.4575744031397 3.723427665658089 24.659945337607724 0.9569543178460866 1.012901911132412 0.38713676456898427 0.03554546558421945 743.915931889606 1212250.737468647 0.009717556224415242 0.015121772515572724 5289.658874417895 -3.723427665658089 0.05594759328632537 LSS(ph)PIDMTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSPIDMTSK 10 0 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein 1 LS(0.001)S(0.999)PIDMTSK 143.97 3.4642e-05 85678000.0 316090.0 338670.0 292380.0 264010.0 282060.0 354690.0 268990.0 248930.0 355690.0 276540.0 True False 314388.2065609003 349942.4262196617 333544.56258748204 297433.6389304447 317978.6690993998 330171.1151504508 255977.92605841203 267506.4206409272 268034.9655018134 258890.98044219433 1.214365235992057 1.351698022163416 1.288359146455303 1.1488760188648452 1.2282338633670504 1.2753287680648728 0.9887479495082961 1.0332782555190507 1.0353198286166665 1.0 17.98198517819169 2.2393730901601137 24.999999991855507 1.017829096899489 1.251715938483726 0.8373770582607523 0.051115025256070666 8.707916671702142 267956.15056168387 0.019498479864605713 0.01542942260639746 173.52940999072155 -2.2393730901601137 0.233886841584237 LSS(ph)PISK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSPISK 7 0 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 LSS(1)PISK;LSS(1)PISK 136.57 0.0031129 745320000.0 3829100.0 2971700.0 2403000.0 2201400.0 2109460.0 3726900.0 3798400.0 3099000.0 4847200.0 3889400.0 True False 3808484.551053005 3070611.2380694165 2741321.512749568 2480097.014285371 2378087.2272510105 3469268.1751789367 3614656.8807029 3330263.116403139 3652672.5091523207 3641175.1621171297 1.0459492832634272 0.8433022585719376 0.7528672449681466 0.6811254344719139 0.6531098124563424 0.9527880480107859 0.9927171091107819 0.914612170007989 1.003157592404455 1.0 21.7959727139625 2.606370780100439 8.678426523847437 0.9661526782369386 0.7894176300003293 0.4247061448491244 0.1030783798535945 0.3348530957966192 21.967318003891048 0.03565787285046147 0.03358730248479281 403.99015347380123 -2.606370780100439 -0.17673504823660935 LSS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 7 LSSPVK 6 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 LS(0.02)S(0.98)PVK;LS(0.003)S(0.997)PVK;LS(0.079)S(0.921)PVK;LSS(1)PVK;LS(0.363)S(0.637)PVK;LS(0.018)S(0.982)PVK;LS(0.021)S(0.979)PVK 122.18 0.020278 6588990000.0 20827400.0 16042820.0 13793930.0 12274370.0 11694950.0 16919400.0 20289600.0 17451050.0 26985100.0 19833400.0 True False 20715267.592541672 16576795.565610528 15735995.445011107 13828303.983480476 13184232.56110055 15749801.70198353 19308114.534201123 18753335.965636343 20334983.686814293 18567615.43177199 1.1156665576504092 0.8927799924833175 0.8474968421677048 0.7447538987595662 0.7100660076436277 0.8482404086759167 1.0398812171196754 1.01000239015865 1.0951855267326396 1.0 24.14628521154443 2.2395216747312996 24.80976495679644 1.0342967403712946 0.8487321538173973 0.4047948717187768 0.10427888022256165 24.11812914174001 622634.8850832614 0.039952108388816944 0.03165513799680764 173.58878952519868 -2.2395216747312996 -0.1855645865538973 LSS(ph)PVLHR ddPTM_BT-474_Trastuzumab_2h_R1 11 LSSPVLHR 8 0 Q16643;Q16643-3;Q16643-2;D6R9W4;D6RCR4 Q16643 DBN1 Drebrin 1 LS(0.048)S(0.952)PVLHR;LS(0.176)S(0.824)PVLHR;LS(0.023)S(0.977)PVLHR;LS(0.084)S(0.916)PVLHR;LS(0.034)S(0.966)PVLHR;LS(0.204)S(0.796)PVLHR;LS(0.034)S(0.966)PVLHR;LS(0.142)S(0.858)PVLHR;LS(0.026)S(0.974)PVLHR;LS(0.035)S(0.965)PVLHR;LS(0.015)S(0.985)PVLHR 166.07 0.00033632 99531970000.0 8013255.0 9295450.0 8697991.0 8130374.0 7543559.0 8665616.0 8966594.0 7762734.0 10046806.0 8323079.0 True False 7970112.525436334 9604843.434031826 9922592.528506937 9159678.514773961 8504186.524472792 8066582.3625858985 8532845.592504548 8342028.629444535 7570905.281603113 7791892.972473571 1.0228724333858743 1.2326713762577164 1.2734508242811458 1.1755395700547182 1.091414699164316 1.0352532293606602 1.0950927614956392 1.0706035951615902 0.971638767158232 1.0 22.893542430376094 3.135245924477133 3.0693458948302106 1.047297214372114 1.1883962151676983 0.47579734027399667 0.06901892016458668 0.22602263224789 4.2663057156475634 0.021099166430222045 0.026260282409651375 1365.3560670327718 -3.135245924477133 0.14109900079558435 LSS(ph)SKENLDASK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSSKENLDASK 12 1 K7EQL6;Q8NFA0;K7EN13 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 LS(0.033)S(0.546)S(0.421)KENLDASK;LS(0.001)S(0.5)S(0.5)KENLDASK;LS(0.031)S(0.534)S(0.434)KENLDASK;LS(0.001)S(0.499)S(0.499)KENLDASK 171.81 2.268e-05 2638060000.0 2717410.0 1704720.0 1549050.0 1463330.0 1373030.0 2367760.0 2329740.0 2312000.0 4036760.0 2302210.0 True False 2702779.766492631 1761460.574675 1767142.775416032 1648587.4279613968 1547877.2319135969 2204082.3243075144 2217041.57572893 2484533.180098119 3041954.587812699 2155280.9867788544 1.2540266364674952 0.817276534001985 0.8199129423292 0.7649060322409611 0.7181788552902123 1.022642679923417 1.0286554696714414 1.1527653217093257 1.4113958256361785 1.0 21.039444536924588 2.070819385122823 1.683475189618893 1.2073263936367875 0.8684381099072009 0.37314501819542967 0.1696154348990455 0.3665698840030077 1.9676343073192324 0.10142331987937926 0.05327816301090281 117.7116331248739 -2.070819385122823 -0.33888828372958657 LSS(ph)SPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSSPGK 7 0 A0A5F9ZHP4;C9J1X3;A0A5F9ZI29;A0A5F9ZGX5;A0A5F9ZHJ2;A0A499FJ16;Q07912;Q07912-3;A0A5F9ZHD0 A0A5F9ZHP4 TNK2 Activated CDC42 kinase 1 1 LS(0.004)S(0.498)S(0.498)PGK 83.99799999999998 0.022939 137520000.0 453040.0 405860.0 323150.0 315670.0 363190.0 291840.0 435940.0 409900.0 601020.0 477910.0 True False 450600.88297747547 419368.80475244945 368646.7111298477 355633.7896336255 409440.0937042156 271665.7877174651 414851.9167474784 440488.8194300255 452906.6742553909 447409.37464066414 1.0071333068051482 0.9373268163843562 0.8239583969958731 0.7948733526633232 0.9151352584711854 0.6071973523926557 0.9272311673859446 0.9845319396443205 1.0122869567030013 1.0 18.771235960172024 2.00572788451224 24.999898280440476 0.9868861430889689 0.8442748336896378 0.31520958002946664 0.10004222431771778 188.9762234375088 824800.4129693143 0.03856676465781277 0.028402240429337054 101.32762992105903 -2.00572788451224 -0.1426113093993311 LSS(ph)TDDGYIDLQFK ddPTM_BT-474_Trastuzumab_2h_R1 6 LSSTDDGYIDLQFK 14 0 Q96A57;Q96A57-2;Q5JWB9;A0A087WTT2 Q96A57 TMEM230 Transmembrane protein 230 1 LS(0.021)S(0.977)T(0.002)DDGYIDLQFK;LSS(0.999)TDDGYIDLQFK;LSS(0.985)T(0.015)DDGYIDLQFK;LS(0.084)S(0.885)T(0.03)DDGYIDLQFK;LS(0.017)S(0.965)T(0.017)DDGYIDLQFK;LS(0.014)S(0.971)T(0.014)DDGYIDLQFK 389.72 5.315399999999997e-114 861822000.0 1721359.0 1599112.0 1493200.0 1348859.0 1900120.0 2119784.0 1360551.0 1322197.0 2332575.0 1665859.0 True False 1712091.394404964 1652337.4762363818 1703429.580872933 1519624.4110983717 2142089.019106402 1973248.3215147962 1294735.9503204525 1420866.0541203232 1757743.1461536502 1559542.4524063552 1.0978164728784572 1.0595014413918935 1.092262399298308 0.9744040046833029 1.3735368446054061 1.2652738746996581 0.8302024406727053 0.9110787923265211 1.1270890019322486 1.0 20.572691394266137 2.2376015306416623 24.999961801756747 0.9498506454794804 1.1403677135600436 0.31812996820898476 0.12566816314492643 31.056504836846287 809500.3997074702 0.04834366738555006 0.037770918126552235 172.82299639691865 -2.2376015306416623 0.19051706808056323 LSS(ph)TPPLSALGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 LS(0.008)S(0.562)T(0.43)PPLSALGR 87.001 0.011323 347880000.0 772650.0 819000.0 823570.0 896150.0 871000.0 890920.0 851060.0 774600.0 1066200.0 944540.0 True False 768490.1382494846 846259.9199040461 939521.497401233 1009602.4981156696 981916.6871785321 829332.7974000945 809890.9764350806 832404.5853391015 803449.2963480363 884258.6485386227 0.8690784529159383 0.9570275861057447 1.062496249207108 1.1417502105115935 1.1104405807071323 0.9378848584299381 0.9158982813157142 0.9413587152523549 0.9086134443534857 1.0 19.754108898787393 2.638181084237619 10.497259967641304 0.9352532913533365 1.0323920369398067 0.2498864681223294 0.07524943730729701 0.7248274889443318 71.8665280140355 0.026672621574317545 0.025139065283112057 434.6914361421046 -2.638181084237619 0.09713874558647029 LSSAENDRDILR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSAENDRDILR 12 1 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 77.91199999999998 0.024757 272380000.0 142410.0 284010.0 266800.0 343980.0 355630.0 251500.0 211620.0 163260.0 145600.0 211400.0 False True 141643.28038323845 293463.1011623294 304363.1209328276 387527.8327309357 400917.3725158455 234114.39696731936 201383.13213309462 175443.29021748202 109718.83094004323 197908.27101135455 0.7157016715845695 1.4828238338027449 1.537899954243779 1.9581184290610176 2.025773710553228 1.182943975867929 1.017557937846573 0.8864879134203357 0.5543923474211361 1.0 17.594472381403932 2.3638576626643237 2.8344021642367205 0.8497754089410768 1.5647279421411513 0.4464529943711021 0.35377131219948993 0.2521599899813276 4.1188745630923576 0.1446036381663877 0.1147456280748157 231.13071493751158 -2.3638576626643237 0.7149525332000745 LSSAGPRS(ph)PYCK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSAGPRSPYCK 12 1 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 LS(0.003)S(0.003)AGPRS(0.994)PYCK;LS(0.003)S(0.02)AGPRS(0.977)PYCK;LSSAGPRS(1)PYCK;LSSAGPRS(0.998)PY(0.002)CK 107.13 0.0011188 1813740000.0 1383190.0 1522850.0 1349420.0 1411480.0 1278390.0 1919050.0 1968440.0 1518450.0 2652990.0 2027960.0 True False 1375743.0587268546 1573537.1416677367 1539406.6066310976 1590173.2232776943 1441185.3888888224 1786390.5904577905 1873219.0370289607 1631764.449532865 1999196.1627446827 1898533.856576093 0.7246344614617174 0.8288170032982867 0.8108396915329903 0.8375795974191838 0.7591043920006384 0.9409316480030823 0.9866661216182964 0.8594866211528444 1.0530210750890316 1.0 20.85645429610783 2.7005589520598807 8.189204043479936 0.9530249666053526 0.7978196944887382 0.7050902898638929 0.056384748465126915 0.1944921879422184 38.80071384275421 0.01785023894891808 0.01693415348851905 501.83269425452255 -2.7005589520598807 -0.1552052721166144 LSSANGHEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSANGHEER 10 0 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;F8WF24;F2Z2Z5;A8MYG5;H0Y6I9;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 0 ; 173.04 3.5341e-06 1223890000.0 406560.0 633450.0 711130.0 654830.0 705750.0 630640.0 729340.0 562070.0 641760.0 738660.0 False True 404371.12613306264 654534.0003213891 811250.9227472331 737731.4108587679 795623.0791920202 587045.3411668801 694059.0378506347 604014.5175336287 483606.84714342165 691518.0864013582 0.5847585682644965 0.9465175433480947 1.1731449092950863 1.0668288008169138 1.1505455820142343 0.848922613466046 1.0036744540732108 0.8734616337757762 0.6993408511700667 1.0 19.39940745946452 1.6126247000727738 4.648981282547727 0.831319933707313 0.9807859124127636 0.07414170383053398 0.1718639794719796 0.34800366844981057 16.68399836768814 0.09859726507115635 0.04521299620648173 40.9849774122124 -1.6126247000727738 0.14946597870545053 LSSCDSFTSTINELNHCLSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSCDSFTSTINELNHCLSLR 21 0 P07814;V9GYZ6;V9GZ76 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 354.12 1.713199999999999e-95 1635540000.0 641980.0 704510.0 684970.0 752500.0 746440.0 702980.0 762310.0 628470.0 834720.0 762850.0 False True 638523.651010684 727959.189464711 781407.8221340299 847766.4228444372 841494.7095034949 654384.6472369223 725434.1529930035 675369.6227059963 629014.4406749512 714164.2598912566 0.8940851382116347 1.0193161858527546 1.0941569972333989 1.1870748376200229 1.1782929457035927 0.916294309290363 1.01578053360366 0.9456782712829015 0.8807699796832862 1.0 19.445896410982147 2.719509272166735 24.82498748837573 0.9535242047698177 1.078851470588096 0.3423937132726922 0.08502639223196912 933.4285794868332 1216309.01508666 0.02954965570998453 0.027897350204694606 524.2147928501284 -2.719509272166735 0.12532726581827835 LSSEDKETMEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LSSEDKETMEK 11 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;; 77.124 0.03053 1600720000.0 1361670.0 1281190.0 1207520.0 1201480.0 1292310.0 1861400.0 1605990.0 1405830.0 2788980.0 1753070.0 False True 1354338.9200157586 1323833.63465429 1377528.3200480074 1353587.2448094806 1456878.0183785183 1732725.7992642857 1528302.1282224215 1510740.1732600937 2101673.249417322 1641187.571721264 0.825218849662223 0.8066315255274961 0.8393484960425743 0.8247608427779218 0.8876974475565622 1.0557756036666894 0.931217220113086 0.9205164597216892 1.2805807731124266 1.0 20.646308703561246 2.6085434661720286 0.636871837615216 1.0699117181814317 0.8004755646387851 0.5387756784145835 0.09373154816926259 0.6690174594804343 0.5673575313737037 0.0763917398177431 0.07200838546910224 406.0162971804797 -2.6085434661720286 -0.2694361535426466 LSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 LSSERPS(0.5)S(0.5)DGEGVVENGITTCNGK 321.94 3.2435999999999997e-74 828130000.0 314500.0 290110.0 290050.0 231380.0 264980.0 337440.0 315220.0 295440.0 354930.0 310030.0 True False 312806.7669442351 299766.1359748014 330886.5188402049 260672.68427607443 298723.63234049117 314113.56704831886 299971.60434266186 317487.23301392194 267462.25731833477 290243.6199699632 1.0777386492650791 1.032808700517943 1.1400302920506842 0.8981168450939627 1.0292168777780732 1.0822410741735715 1.0335166174322983 1.0938646404933143 0.9215095144761974 1.0 18.146904829076806 7.999999042323913 0.05626827215986767 0.9350605219211263 1.2383181351523602 0.07411987791659325 0.06889805433884613 1374.858226577444 5.79945859638824 6.691621193339691 34.803930364797374 99999779.48717497 -7.999999042323913 0.3032576132312339 LSSERPSS(ph)DGEGVVENGITTCNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 LSSERPS(0.321)S(0.679)DGEGVVENGITTCNGK 315.94 7.5644e-74 977930000.0 367010.0 326030.0 323360.0 267220.0 300730.0 383250.0 403230.0 318880.0 386960.0 394420.0 True False 365034.0589386442 336881.7114607035 368886.27730449475 301050.0246013165 339026.1829336395 356756.8295734595 383724.22441181296 342676.44483983045 291598.89299834607 369247.7779200489 0.9885883701043772 0.9123459411410366 0.9990209809315834 0.8153062593825577 0.9181536171818124 0.966171906525883 1.0392052365847915 0.9280392877923512 0.7897106236925935 1.0 18.49422971352201 -2.236492439310537 2.4566600817619095 1.2584496721952034 0.9322092098285439 0.0754926252781557 0.07404436713013185 11182133.416435083 3585104.001630501 16037780.102045935 0.018040311929026144 0.005801062715807848 2.236492439310537 -0.3262404623666595 LSSESHHGGS(ph)PIHWVLPAGMSAK ddPTM_BT-474_Trastuzumab_2h_R1 7 LSSESHHGGSPIHWVLPAGMSAK 23 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 1 LSSESHHGGS(1)PIHWVLPAGMSAK;LS(0.197)S(0.197)ES(0.142)HHGGS(0.465)PIHWVLPAGMSAK;LS(0.001)S(0.001)ES(0.003)HHGGS(0.996)PIHWVLPAGMSAK;LS(0.004)S(0.004)ES(0.025)HHGGS(0.966)PIHWVLPAGMSAK;LSSESHHGGS(1)PIHWVLPAGMSAK;LS(0.045)S(0.045)ES(0.331)HHGGS(0.578)PIHWVLPAGMS(0.001)AK;LSSES(0.001)HHGGS(0.998)PIHWVLPAGMSAK 254.11 2.7466e-43 19786560000.0 4125130.0 7265340.0 8060450.0 8120560.0 8265490.0 8900510.0 9417930.0 5100220.0 8351970.0 8579700.0 True False 4102920.7584250285 7507162.449909222 9195291.29731264 9148622.063380232 9318051.158102516 8285238.69324689 8962348.745913597 5480824.3147923965 6293738.904164247 8032136.200549283 0.5108131455918847 0.9346408305919712 1.14481267096589 1.1390023569015921 1.160096259008319 1.0315112301856009 1.1158113510700554 0.6823619741928164 0.783569743716976 1.0 22.937352302531064 -1.5884925663334915 5.796646987746943 1.0001947197802346 0.9527095554559949 0.004870155881564697 0.21088498424995575 0.0005606172443960334 3.979853032764718e-05 0.215706780033837 0.05063440815420783 0.025793331135909783 1.5884925663334915 -0.04748516432423966 LSSGLVS(ph)PAPSFYSK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSGLVSPAPSFYSK 15 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 LSSGLVS(1)PAPSFYSK;LSSGLVS(0.999)PAPS(0.001)FYSK;LSSGLVS(1)PAPSFYSK;LSSGLVS(1)PAPSFYSK 332.77 6.599999999999998e-69 1536684000.0 2165800.0 2371750.0 2097280.0 2166660.0 2029520.0 2427030.0 2348520.0 2442980.0 3131300.0 2598480.0 True False 2154139.573443001 2450692.264996851 2392558.7941154474 2440958.9338473454 2287967.3420925085 2259255.1287140874 2234913.1153823636 2625287.572801084 2359633.0722703165 2432642.7817293475 0.8855141369797169 1.0074197014880548 0.9835224522420819 1.003418566910217 0.9405274622630823 0.9287245729962867 0.9187181661721745 1.07919156586352 0.9699874926119942 1.0 21.21409305447343 1.7488049631846578 24.9999999999994 1.0225685606743333 0.9564285568765117 0.29963289769520796 0.044151781708863656 3.1081750067553977 7600.302642975215 0.020234571823651036 0.011221174299983969 56.07960722023296 -1.7488049631846578 -0.06614000379782159 LSSGPEQITLEASS(ph)TEGHPGAPSPQHTDQTEAFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 LSSGPEQITLEAS(0.037)S(0.823)T(0.14)EGHPGAPSPQHTDQTEAFQK;LSSGPEQITLEAS(0.033)S(0.959)T(0.008)EGHPGAPSPQHTDQTEAFQK 283.54 2.7838999999999997e-74 422630000.0 122747.0 123596.0 136043.0 128950.0 144944.0 146032.0 158946.0 137568.0 164380.0 157519.0 True False 122086.14379047387 127709.8181446401 155196.67189304615 145275.0567784585 163401.75924960425 135937.15156235202 151257.17474731535 147834.02271614963 123870.75157915043 147466.00256119936 0.8278934918562488 0.866028887516902 1.0524234006318745 0.985142705812266 1.1080639361726201 0.9218202785820903 1.0257087879258315 1.0024956271178338 0.8399953170748169 1.0 17.170022862200877 4.3499402546043004 5.789380943105786 0.9952814927077281 0.8380875324491175 0.42027262406748955 0.06847284807307448 0.17149174189234728 7.88241923532292 0.016038419485232668 0.04538654100275536 22384.131814421577 -4.3499402546043004 -0.15719396025861065 LSSGPEQITLEASSTEGHPGAPS(ph)PQHTDQTEAFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 LSSGPEQITLEASSTEGHPGAPS(1)PQHTDQTEAFQK 216.21 3.2297e-36 290630000.0 68515.0 56903.0 58032.0 57385.0 65979.0 78461.0 54546.0 60075.0 66445.0 73563.0 True False 68146.1228527322 58796.981956410134 66202.4011768136 64649.9351161834 74381.03456182836 73037.17574732736 51907.4015940449 64558.10155466883 50070.5200673845 68868.14635954716 0.9895158568223192 0.8537616454702086 0.9612920439470488 0.9387494586925383 1.0800498996081511 1.0605363961157677 0.7537214857366203 0.93741598935484 0.727049045373983 1.0 16.071549225827347 2.243672198385886 24.999995034316576 0.8553543072676679 0.9766167614938129 0.29929532725250063 0.09440205574047665 165.90838880788067 811436.3208556155 0.03288049654843811 0.026728854183373434 175.2557187906384 -2.243672198385886 0.12126245422614501 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ;;; 457.54 8.726699999999992e-257 1579530000.0 286383.0 337358.0 374382.0 379286.0 375866.0 449365.0 446140.0 364257.0 472344.0 427005.0 False True 284841.1457481423 348586.7570927822 427091.7314133208 427303.5687109304 423730.3071676772 418301.45524142944 424558.50377969455 391439.7069995673 355941.15028532804 399753.1753226275 0.7125425470810995 0.8720049735976442 1.0683885902060173 1.0689185104435204 1.0599798408748062 1.0463993310467947 1.062051610814717 0.9792034964666618 0.8904023088698665 1.0 18.60874996781475 4.504503594437797 2.987809236510912 1.024438816016958 0.7172808119509709 0.7675446283033556 0.05384429890394271 0.13199553025865438 2.164234816946649 0.014321389083139695 0.07333893954104816 31952.40810105801 -4.504503594437797 -0.30715800406598703 LSSIIDCTGTASYHGFLPVLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSIIDCTGTASYHGFLPVLVR 22 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 183.06 4.3932e-17 133020000.0 29993.0 45153.0 50249.0 42093.0 61307.0 49473.0 62082.0 53631.0 53442.0 58535.0 False True 29831.521020535554 46655.89030943509 57323.6224278623 47421.96948410748 69114.08305494176 46053.04795691524 59078.85648372925 57633.21755269988 40271.935186111245 54799.24618566524 0.5443783098669538 0.8513965712477202 1.0460658935643792 0.8653763105323965 1.2612232442172004 0.8403956470657092 1.078096152701887 1.0517155173527912 0.7348994372963812 1.0 15.741868427266594 4.676512226412247 2.4030872251920274 0.9951701762813787 0.47242172158616885 0.4770859926304941 0.13907937952960084 0.3667400865678465 2.857530871500044 0.0324726229186302 0.37481462117172915 47480.16575380644 -4.676512226412247 -0.5227484546952099 LSSLIILMPHHVEPLER ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSLIILMPHHVEPLER 17 0 P50454;E9PKH2;E9PR70;E9PPV6 P50454 SERPINH1 Serpin H1 0 ; 122.01 3.3736e-05 1445790000.0 1505950.0 2119760.0 1752040.0 1960120.0 1993910.0 1858930.0 2067160.0 620070.0 2339100.0 1487840.0 False True 1497842.1325267744 2190314.9301780215 1998712.0029953236 2208270.9910243694 2247822.619669515 1730426.5445505327 1967163.5734819374 666342.7720516605 1762660.147334173 1392884.7773960899 1.0753525035479932 1.5725025972878224 1.4349442505443915 1.5853938723866252 1.6137893500937512 1.2423328710544572 1.4122945453962283 0.4783904475554297 1.2654744857139977 1.0 20.40964448917678 1.7700352796170074 24.999999999991132 0.8655448467279906 1.4330307508315454 0.4812020016793602 0.2383241619595211 19.4929717270815 15491.029478706794 0.1043677623381495 0.05789268823324743 58.8891491612587 -1.7700352796170074 0.5674859041035548 LSSLSLS(ph)PANHENQPSEGER ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSLSLSPANHENQPSEGER 20 0 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 LS(0.022)S(0.018)LS(0.134)LS(0.826)PANHENQPSEGER;LS(0.001)S(0.001)LS(0.147)LS(0.852)PANHENQPSEGER 180.37 3.5327e-17 424150000.0 97552.0 115387.0 107636.0 115954.0 122916.0 130807.0 122487.0 113206.0 127072.0 119084.0 True False 97026.7908710462 119227.58654208557 122790.21321111642 130633.76451096855 138568.6240197896 121764.61997655724 116561.83586422075 121654.00656842033 95756.80827756299 111483.9571670583 0.8703206572193336 1.0694595847851316 1.1014159914248087 1.1717718659305782 1.2429467659830646 1.092216522186178 1.045548066521834 1.0912243309243344 0.8589290397547673 1.0 16.76647659192989 -0.9578806436382225 5.791968023381767 0.9999999333951604 1.072380336988726 0.015422223293531934 0.11299614786156008 9.775362097682697e-08 1.7440026282958292e-08 0.10933547324861548 0.025770594377380347 0.11018420851881092 0.9578806436382225 0.07238040359356557 LSSPAAFLPACNS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 3 LSSPAAFLPACNSPSK 16 0 Q86YS7;Q86YS7-5;H0YFE9;Q86YS7-3;Q86YS7-2;Q86YS7-4 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 1 LSSPAAFLPACNS(0.988)PS(0.012)K;LSSPAAFLPACNS(0.969)PS(0.031)K;LSSPAAFLPACNS(0.983)PS(0.017)K 207.56 1.7971e-11 1788963000.0 1169210.0 1086210.0 951270.0 919363.0 881840.0 1173630.0 1167590.0 1051390.0 1553310.0 1156790.0 True False 1162915.103271442 1122363.8432221885 1085200.5474129347 1035754.2615355888 994137.0969248192 1092499.7205278527 1111109.2110730545 1129850.0606502427 1170517.5637876275 1082962.671822255 1.0738275044278807 1.0363827603897324 1.0020664383444668 0.9564080909573451 0.9179790982564774 1.0088064426907255 1.0259903134088995 1.0432954801194507 1.0808475621953317 1.0 20.0465520854883 2.129125302926197 2.816436594867945 1.0443233677209536 0.9951283727190666 0.161844462521348 0.043378087843973824 0.478662902366749 7.574836580948162 0.0211832897250557 0.013931199995270885 134.62487185829684 -2.129125302926197 -0.049194995001886954 LSSPCIMVVNHDASSIPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSPCIMVVNHDASSIPR 18 0 Q08J23;Q08J23-2 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;;; 258.34 1.176e-30 2935680000.0 519355.0 665617.0 669178.0 612137.0 642150.0 728867.0 696840.0 607079.0 863270.0 731620.0 False True 516558.8503857655 687771.6594710267 763392.4458005535 689633.4814361801 723923.9961787553 678482.139858366 663131.1870126914 652382.3176646986 650528.6757253516 684927.3852286048 0.7541804598940897 1.0041526653828752 1.1145596778054945 1.0068709418094073 1.056935394599728 0.9905898851334619 0.9681773591099171 0.9524839154255107 0.9497775819085228 1.0 19.385591518679792 4.738595064549377 24.12038310256857 1.0039139477592491 0.7541803418075023 0.7188925786155251 0.04701946404932866 0.994965781095084 691866.2104820148 0.012438196138645151 0.07161542090548502 54776.599064596085 -4.738595064549377 -0.24973360595174687 LSSS(ph)KENLDASK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSSKENLDASK 12 1 K7EQL6;Q8NFA0;K7EN13 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 LSS(0.126)S(0.874)KENLDASK 197.06 1.2075e-07 1430000000.0 1441500.0 1043200.0 879730.0 749670.0 808340.0 1426000.0 1511100.0 1257800.0 2332500.0 1329800.0 True False 1433739.1241657054 1077922.2813722834 1003588.3372497627 844578.1451346037 911277.3075934513 1327423.97644293 1438002.3200374225 1351663.422978986 1757686.6288987044 1244931.025500941 1.151661493526351 0.8658489982917279 0.8061397111104482 0.6784136051190133 0.7319901977916948 1.0662630694008088 1.1550859369568627 1.085733583059429 1.4118747086341095 1.0 20.24763438236106 2.5635685014841507 4.39836499460643 1.1565987407480933 0.8373884878582872 0.4935443523347065 0.15247393833790357 0.19569508665607221 6.728508991107726 0.052167270486939636 0.04823974266825883 366.07367698726836 -2.5635685014841507 -0.3192102528898061 LSSS(ph)PGLFGAFSVR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSSPGLFGAFSVR 14 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 LS(0.018)S(0.159)S(0.823)PGLFGAFSVR;LSSS(1)PGLFGAFSVR;LS(0.001)S(0.008)S(0.992)PGLFGAFSVR;LS(0.108)S(0.14)S(0.751)PGLFGAFSVR 241.42 2.0386e-17 1731494000.0 1850660.0 2006190.0 1833510.0 1895679.0 1695251.0 2000000.0 1941360.0 1816190.0 2787330.0 2282800.0 True False 1840696.2521876534 2072964.8213825356 2091652.2708453876 2135671.7670316547 1911131.166310098 1861744.7074935918 1847449.0000846093 1951723.3202259503 2100429.8698084536 2137109.749596594 0.8613016961506575 0.9699851969576357 0.9787294598418322 0.9993271367718899 0.8942597200124364 0.8711507248727022 0.8644614533405869 0.9132536691643293 0.9828366887591692 1.0 21.0272295676977 4.7594141354013955 22.96225269786536 0.9336854547767788 0.8613014760296888 0.17244030142019884 0.05014312492837396 3361.008449787473 3700695.9232435618 0.012950499326346345 0.4843191111409336 57466.419044297654 -4.7594141354013955 -0.07238397874709002 LSSSDRYS(ph)DAS(ph)DDS(ph)FSEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 3 LSSSDRY(0.008)S(0.992)DAS(1)DDS(0.998)FS(0.002)EPR;LS(0.001)S(0.007)S(0.009)DRY(0.212)S(0.772)DAS(0.999)DDS(0.935)FS(0.065)EPR 180.52 2.7259e-14 2122600000.0 1138540.0 1243460.0 1081770.0 1182200.0 1101600.0 1344880.0 1334630.0 1230710.0 1472720.0 1381670.0 True False 1132410.2271436858 1284847.8144125578 1234073.8130866005 1331866.3987863022 1241882.230305251 1251911.6111069894 1270068.8481182891 1322551.8296187518 1109787.8894369537 1293490.637692799 0.8754684372231464 0.9933182173659505 0.9540647432035686 1.02966837174945 0.9601014449709492 0.9678551777846849 0.981892571239412 1.0224672611297667 0.857979066177459 1.0 20.302838181133414 4.744007568811818 24.499017322270205 0.9777275685137345 0.8754683795975603 0.29405548710647267 0.045567249517573384 519.9872036527037 2338676.524426759 0.010139215435285892 0.08702389766751786 55463.53789665885 -4.744007568811818 -0.10225918891617425 LSSSDRYS(ph)DAS(ph)DDSFSEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 LS(0.001)S(0.001)S(0.001)DRY(0.004)S(0.993)DAS(0.997)DDS(0.003)FSEPR;LS(0.001)S(0.002)S(0.002)DRY(0.054)S(0.942)DAS(0.785)DDS(0.185)FS(0.031)EPR 127.49 0.00012807 909690000.0 772823.0 858309.0 786019.0 798551.0 809931.0 920420.0 988113.0 834068.0 1005540.0 965774.0 True False 768662.2068367071 886877.2962062521 896683.6430003754 899647.4747227203 913070.9120128546 856793.5318356263 940314.1992317778 896310.3894714864 757738.1405456808 904137.4764792786 0.8501607629736644 0.9809097833879888 0.9917558627168862 0.9950339391150531 1.0098806163509146 0.9476363430614444 1.0400124137021416 0.9913430344262789 0.8380784562722934 1.0 19.786182629328742 4.738522770213772 9.487274004182503 0.981397316086158 0.8497269914471621 0.35005415104202875 0.0516385167793539 0.08130765509134093 187.60103164918667 0.011831126548965978 0.06877168807254426 54767.48149940074 -4.738522770213772 -0.13167032463899586 LSSSDRYS(ph)DASDDS(ph)FSEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 LSSSDRYS(0.999)DAS(0.001)DDS(0.999)FSEPR;LSS(0.003)S(0.116)DRYS(0.881)DAS(0.002)DDS(0.998)FSEPR;LSSSDRY(0.001)S(0.997)DAS(0.109)DDS(0.552)FS(0.34)EPR;LSS(0.001)S(0.022)DRYS(0.977)DAS(0.002)DDS(0.998)FSEPR 293.72 1.5365e-48 1865310000.0 1629390.0 1807590.0 1516706.0 1609780.0 1581060.0 1885550.0 1921740.0 1713090.0 1896270.0 1949060.0 True False 1620617.5452822493 1867754.5404387726 1730245.0213551181 1813577.9829455393 1782398.6193231812 1755206.3666072707 1828778.0944402858 1840929.4746947594 1428959.6672161813 1824669.3221257818 0.8881705444547029 1.0236126172509963 0.9482512805878398 0.9939214524814168 0.9768337735007491 0.9619312087531645 1.0022517900995438 1.0089112873065866 0.7831334970609416 1.0 20.79920360287562 1.2893231864794812 24.99999980898388 0.8915612270019451 0.9791546212863104 0.23335353968624795 0.060551059871204 110.04603821098426 54196.16863138743 0.036031064474021504 0.01315728578466773 19.468082880670384 -1.2893231864794812 0.0875933942843653 LSSSDS(ph)IGPDVTDILSDIAEEASK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSSDSIGPDVTDILSDIAEEASK 24 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 LS(0.24)S(0.24)S(0.24)DS(0.279)IGPDVT(0.001)DILSDIAEEASK 101.94 0.002255 172970000.0 39924.0 40699.0 36179.0 42894.0 50235.0 63685.0 59059.0 56046.0 54642.0 57630.0 True False 39709.053619973376 42053.64161193496 41272.68872649467 48324.37600197907 56632.12948382735 59282.60584836473 56202.09054271072 60228.43711582143 41176.21126528741 53952.00406047473 0.7360070179314109 0.7794639391855971 0.7649889831753455 0.8956919551646746 1.049676105086819 1.098802665085711 1.0417053364637554 1.1163336406987117 0.763200774138678 1.0 15.71938892952057 3.5036204554084818 2.6648584698567164 1.0300054359618152 0.7608251584187048 0.5899514588433044 0.09304800542986004 0.17819732700884014 2.525595144282289 0.02644872005982468 0.041839871473793894 3188.7498809848785 -3.5036204554084818 -0.26918027754311036 LSSSSATLLNS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LSSSSATLLNSPDR 14 0 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3 Q14244-6 MAP7 Ensconsin 1 LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR 329.21 2.3691999999999997e-68 3562310000.0 1821510.0 1874250.0 1774650.0 1791010.0 1770230.0 2078570.0 2073700.0 1883890.0 2478740.0 2218000.0 True False 1811703.1925487854 1936633.27824195 2024505.294465676 2017751.6823636089 1995658.2975247498 1934883.3483274782 1973387.2086967144 2024475.437999586 1867887.740414304 2076445.3410746653 0.8725022309574195 0.9326675929931508 0.9749860756835006 0.9717335883829817 0.9610935852960598 0.931824840294654 0.9503680013437709 0.9749716970405866 0.8995602742172726 1.0 20.98568446507032 4.665095136365174 3.002072880851302 0.9573088964281022 0.8652527304433393 0.4966564914596716 0.026002233075458233 0.24757921509569264 3.4849898769904093 0.006028895414615886 0.049344721427329076 46248.232148484676 -4.665095136365174 -0.09205616598476296 LSST(ph)PPLSALGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 LSS(0.023)T(0.975)PPLS(0.002)ALGR;LSS(0.044)T(0.952)PPLS(0.004)ALGR 119.43 0.0057968 573640000.0 1212620.0 1257390.0 1076770.0 1174470.0 1171390.0 1288300.0 1142350.0 1104110.0 1535640.0 1245480.0 True False 1206091.388654747 1299241.4660416956 1228369.85654738 1323157.7815788763 1320559.573127512 1199242.8533319978 1087090.1662992195 1186504.294756979 1157202.098521759 1165992.4000909252 1.0343904373310624 1.1142795321310666 1.053497309632199 1.1347910856671923 1.1325627620081686 1.0285168696112252 0.9323304047388706 1.0175917910480843 0.9924610987443138 1.0 20.153126954443316 2.519043276123366 5.870516235600004 0.9872647438437038 1.09425219876553 0.6706626432538372 0.035934004810965786 0.11650699494851675 10.582834085071504 0.011729424740236628 0.010785602182462554 330.4024629963735 -2.519043276123366 0.10698745492182626 LSSWDQAET(ph)PGHT(ph)PSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 LSSWDQAET(1)PGHT(0.999)PS(0.001)LR;LSSWDQAET(1)PGHT(0.95)PS(0.05)LR 151.0 4.5211e-07 342370000.0 558130.0 369810.0 327010.0 398380.0 342780.0 410500.0 300740.0 342730.0 421980.0 407200.0 True False 555125.0900940719 382118.9022951339 373050.16557812574 448814.86715317785 386431.0011837629 382123.1012130594 286192.05726163345 368306.25294767634 317988.6832423038 381212.1473785403 1.4562103907534656 1.002378609713329 0.9785893973826868 1.177336216171277 1.013690156101034 1.002389624362139 0.7507422290440479 0.9661451123223297 0.8341514965590638 1.0 18.54023456609694 7.999986368552075 0.8700490826210466 0.9436211480128565 197.25555448224438 0.6376724039385062 0.10896805615888867 505.29918071251484 1.2645202350960556 0.03594805834575593 196623.88697955586 99996861.29237963 -7.999986368552075 196.31193333423153 LSSWDQAET(ph)PGHTPSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 LSSWDQAET(1)PGHTPSLR 130.17 0.00011463 912330000.0 172580.0 192500.0 203890.0 190870.0 167520.0 186070.0 152970.0 143440.0 175370.0 158360.0 True False 171650.84845544051 198907.2461312929 232595.93975635048 215034.12242965796 188852.6790311689 173207.41886166635 145570.2566978523 154144.2211735614 132152.4133376058 148253.32922118276 1.157821206155515 1.3416713619600293 1.5689087117182705 1.4504505467721625 1.273851184477719 1.1683206021178383 0.981902109467454 1.0397353097115942 0.8913959236655279 1.0 17.17770497716398 2.5844575625729798 1.7066194290534678 0.98039129954532 1.387078944030618 0.7478687947136862 0.10460978755404705 0.1886176746470908 1.103898551796264 0.046608304275066514 0.040143921559733044 384.1117235655746 -2.5844575625729798 0.40668764448529793 LSSWDQAETPGHT(ph)PSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 LSSWDQAETPGHT(1)PSLR;LSSWDQAETPGHT(0.997)PS(0.003)LR;LSSWDQAETPGHT(0.999)PSLR 183.87 2.4557e-09 1978040000.0 1537240.0 1260660.0 1275000.0 1342750.0 1079890.0 1301780.0 1075620.0 1188060.0 1748050.0 1247420.0 True False 1528963.6706434216 1302620.306014936 1454508.917501331 1512742.0123247406 1217407.5904904997 1211791.0126605043 1023588.1513325729 1276719.0700464386 1317266.500169938 1167808.5876300079 1.3092588004908874 1.1154399101127692 1.2455028443087262 1.2953681179847742 1.0424718600170169 1.0376623579380897 0.8765033603750757 1.093260559624294 1.1279815152269477 1.0 20.15537239464896 3.2017845145192974 9.721843197759252 1.0279093381053535 1.2326267873700132 0.633768477024163 0.07873831806174425 0.24738556951216623 62.82286219080064 0.023150886891702475 0.027830362299345206 1591.418910985721 -3.2017845145192974 0.20471744926465973 LSSWDQAETPGHTPSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;; 281.07 5.9329999999999994e-36 3270430000.0 1329600.0 1606690.0 1577470.0 1510000.0 1503350.0 1567830.0 1512990.0 1632520.0 1673460.0 1606770.0 False True 1322441.5813324482 1660167.705385383 1799564.0643849608 1701165.8451762109 1694792.7114464394 1459449.6023748398 1439800.893516923 1754346.9321685873 1261058.2062151446 1504224.5629749931 0.8791516997415452 1.1036701209704833 1.19634003371535 1.1309254529202177 1.1266886295850325 0.9702338588916543 0.957171508135291 1.1662799394120467 0.8383443783959197 1.0 20.520588529761465 2.7417219877087016 24.92808516611803 1.008197008800926 1.0967368573510818 0.16188362205703022 0.10831909272652779 574.0258171000488 4526325.763520334 0.034334028420103094 0.035028286957448744 551.7241416808916 -2.7417219877087016 0.08853984855015584 LST(ph)PQKK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSTPQKK 7 1 B5MC51;P53671-3;F5GXC4;F5H2U0;Q96C90 B5MC51;Q96C90 LIMK2;PPP1R14B LIM domain kinase 2;Protein phosphatase 1 regulatory subunit 14B 1 LS(0.093)T(0.907)PQKK;LS(0.014)T(0.986)PQKK;LS(0.018)T(0.982)PQKK;LS(0.156)T(0.844)PQKK 111.46 0.003853 7169910000.0 4721370.0 2957630.0 2490980.0 2177430.0 2160830.0 3163260.0 3982710.0 3399590.0 6061340.0 4343370.0 True False 4695950.668513517 3056072.926624913 2841688.3320137 2453092.4147430738 2435998.8922571675 2944591.281713089 3790051.101870318 3653284.668568234 4567603.9747948 4066172.4080538624 1.1548823309145115 0.7515846894666229 0.6988607581875209 0.6032927698501511 0.599088933718646 0.7241678380092149 0.9320930648103776 0.8984578866681053 1.1233178322069555 1.0 21.95523995690501 1.8236639307395595 1.6195493604556601 1.0381668178683938 0.7416311063299647 0.35399790358145433 0.15489647448556132 0.41107496424652085 2.054046046858058 0.11538926445384724 0.04878533209506908 66.62909750125567 -1.8236639307395595 -0.29653571153842917 LSTDHIPILYR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSTDHIPILYR 11 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ; 90.685 0.011303 1834750000.0 1251280.0 1868520.0 1814170.0 1747920.0 1756540.0 1703850.0 1673520.0 1598520.0 1928950.0 1668580.0 False True 1244543.2475102763 1930712.5586558054 2069589.3669516796 1969206.4927817269 1980224.9571717337 1586066.8599314773 1592565.4441327704 1717809.6795200864 1453586.1191057472 1562089.7958567922 0.7967168409980269 1.2359805203111431 1.3248850177761569 1.2606231075862286 1.2676767766001558 1.0153493506828357 1.019509536748022 1.099686896410384 0.9305394113457276 1.0 20.575045957704013 2.7241285590196784 24.066387235815363 1.026318711207095 1.1932853008605213 0.24407815567242175 0.14208881853358274 719.0169847299277 1199004.4275855958 0.04642999864756639 0.04398548212212758 529.8202570571945 -2.7241285590196784 0.16696658965342626 LSTIFEECDEELER ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTIFEECDEELER 14 0 Q5T5P2;Q5T5P2-3;A0A0U1RRK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 0 176.42 5.182100000000002e-06 22563000.0 20214.0 39801.0 24210.0 26199.0 25421.0 24995.0 22344.0 21352.0 43826.0 28621.0 False True 20105.17006998653 41125.752224787444 27618.55756290766 29515.790713755992 28658.213667928238 23267.154481901176 21263.135357630985 22945.394663259092 33025.66953831277 26794.383276329107 0.7503501708788344 1.5348646692353267 1.0307592183809153 1.1015663398317905 1.069560488568725 0.8683593961446398 0.7935668881924005 0.8563509160343199 1.2325594210443558 1.0 14.709642989611677 2.9139730763609246 3.774123250924306 0.9219547702962463 1.1269791682431916 0.09856347259813092 0.21091832084294676 0.4201143465271819 11.156521427560858 0.06354299435041919 0.06923811668871739 820.300689057179 -2.9139730763609246 0.20502439794694527 LSTIQNS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LSTIQNSPTK 10 0 Q5VYV7 Q5VYV7 SLX4IP Protein SLX4IP 1 LSTIQNS(0.999)PTK;LSTIQNS(0.993)PT(0.007)K 158.11 8.484400000000001e-06 129060000.0 466120.0 382270.0 388860.0 314730.0 256000.0 451900.0 463050.0 360250.0 755910.0 462930.0 True False 463610.46171080007 394993.6258629053 443608.1079682893 354574.78573000623 288600.0825691215 420661.21665817685 440650.5024772212 387133.68431243394 569626.1091750565 433385.41106568684 1.069741735354659 0.9114142187934364 1.0235880042142282 0.8181511806272235 0.66592016067052 0.9706400029105239 1.0167635809282773 0.893278071729455 1.3143638309705816 1.0 18.72529106363804 1.2602834320034257 24.987399222387385 1.1571819798967586 0.9176020463238836 0.34324615493921473 0.13049985113044169 219.07559242632743 252000.25886404744 0.08695804708408653 0.03169438744708757 18.208888308681082 -1.2602834320034257 -0.239579933572875 LSTPQKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTPQKK 7 1 B5MC51;P53671-3;F5GXC4;F5H2U0;Q96C90 B5MC51;Q96C90 LIMK2;PPP1R14B LIM domain kinase 2;Protein phosphatase 1 regulatory subunit 14B 0 100.15 0.016044 490950000.0 463990.0 592090.0 412290.0 533550.0 543560.0 716280.0 736360.0 717720.0 1081300.0 829750.0 False True 461491.9293941355 611797.3577240374 470336.8483110777 601097.3752938866 612779.144067467 666765.2495417554 700739.4536316297 771279.9109083139 814828.1036776705 776794.6446152844 0.5940977227291444 0.787592141584648 0.6054841541087309 0.7738176099187531 0.7888560359101757 0.8583545910927048 0.9020909946909819 0.9929006543168154 1.0489620510723558 1.0 19.56717372898691 2.5683907268003807 0.6946116289033744 1.0367798990533221 0.6613355352162482 0.858989570346468 0.05592694645086901 0.23531245506992263 0.23523578675474527 0.040450565785221985 0.034674937934168704 370.1610571473595 -2.5683907268003807 -0.3754443638370739 LSTQVKPLIWIESVIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTQVKPLIWIESVIEK 17 1 Q9Y6Q5;K7EJJ1;Q9Y6Q5-2 Q9Y6Q5;Q9Y6Q5-2 AP1M2 AP-1 complex subunit mu-2 0 160.55 2.8057e-09 118060000.0 229860.0 252780.0 246640.0 277590.0 234580.0 260030.0 304480.0 226500.0 356680.0 306880.0 False True 228622.45929984664 261193.62949126321 281364.76816668926 312732.8655380561 264452.37253540783 242054.73814477935 289751.139173446 243402.58014369555 268780.9932671336 287294.6556668136 0.7957769307236564 0.9091489324262936 0.9793595620971054 1.0885439717359175 0.920491792378147 0.8425312945100494 1.008550397503674 0.84722279145345 0.9355586258410912 1.0 18.132171630152015 3.8215536375156614 0.005938071548208428 1.8458751641838302 5.3972783683207884e-05 0.054369795490927575 0.0823093687906186 73796.97446242456 94.57004621596647 14246.115505695907 15156.3535642518 6630.61233954443 -3.8215536375156614 -1.845821191400147 LSTTPS(ph)PT(ph)SSLHEDGVEDFRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSTTPSPTSSLHEDGVEDFRR 21 1 O94842-3;O94842-2;O94842;C9J919;C9JNL1 O94842-3 TOX4 TOX high mobility group box family member 4 2 LS(0.002)T(0.011)T(0.078)PS(0.891)PT(0.886)S(0.11)S(0.023)LHEDGVEDFRR;LS(0.002)T(0.009)T(0.084)PS(0.896)PT(0.85)S(0.154)S(0.006)LHEDGVEDFRR 151.42 5.3746e-08 1241090000.0 899360.0 639070.0 583270.0 850900.0 644170.0 696840.0 661000.0 758890.0 886380.0 830900.0 True False 894517.9456882887 660341.0586240267 665389.3461262762 958623.8527552586 726201.2312052766 648669.0909849176 629024.9047347864 815522.2253653371 667943.5258834867 777871.2506307202 1.149956300561292 0.8489079112881514 0.8553977866989679 1.2323682768555582 0.9335751007849331 0.8339028990452575 0.8086491231354226 1.0484025790953047 0.8586813374859903 1.0 19.569171861720758 3.0219695380949982 24.99165516439659 0.9125181924859598 1.0081337051521175 0.1431910547608466 0.12847610439041252 551.9459466452803 627866.946232895 0.037702397433358674 0.04505970671759581 1051.8880906180489 -3.0219695380949982 0.09561551266615775 LSTTPS(ph)PTSSLHEDGVEDFRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSTTPSPTSSLHEDGVEDFRR 21 1 O94842-3;O94842-2;O94842;C9J919;C9JNL1 O94842-3 TOX4 TOX high mobility group box family member 4 1 LSTTPS(0.994)PT(0.005)SSLHEDGVEDFRR;LST(0.008)T(0.053)PS(0.911)PT(0.023)S(0.004)SLHEDGVEDFRR 176.53 1.3598e-13 2006720000.0 222630.0 388310.0 362210.0 368470.0 390030.0 427100.0 415970.0 334540.0 351720.0 421650.0 True False 221431.38481651852 401234.66361164826 413206.01961424184 415118.26421992015 439698.00861107185 397575.5822852568 395847.9419402862 359505.07355969865 265043.3188065384 394739.9360072732 0.5609551115001411 1.0164531809729416 1.0467803784784229 1.05162469351029 1.1138928912502288 1.0071835809334766 1.0028069263632666 0.9107390480832288 0.6714378116574831 1.0 18.590542959122747 -0.5037472628089401 7.394111085032683 0.9999999949366695 0.9489614889766177 0.0050033606239523465 0.1694651005945959 0.0 0.0 0.16092519670668678 0.03793043261835911 0.3135109667129725 0.5037472628089401 -0.05103850596005177 LSTTPSPT(ph)SSLHEDGVEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTTPSPTSSLHEDGVEDFR 20 0 O94842-3;O94842-2;O94842;C9J919;C9JNL1 O94842-3 TOX4 TOX high mobility group box family member 4 1 LSTT(0.001)PS(0.131)PT(0.829)S(0.031)S(0.007)LHEDGVEDFR 173.47 1.7760999999999998e-11 224090000.0 114830.0 216760.0 231320.0 158380.0 220640.0 215110.0 197270.0 176450.0 194130.0 208300.0 True False 114211.76803881225 223974.72556581296 263887.845330516 178430.89176093292 248737.19616426103 200239.9520144731 187727.29645541837 189617.59499494496 146289.26270872654 195006.1156653979 0.5856830061411151 1.148552314893144 1.3532285612175832 0.915001517527247 1.27553536111174 1.026839344659609 0.9626738926359165 0.9723674272877736 0.7501778198573916 1.0 17.573159844061895 1.9160318052511185 1.7421675382107702 0.8903676807779708 1.072241455505865 0.0868273059722715 0.20648928986017961 0.8021904867183196 4.538300290340789 0.13306107702231043 0.06174295586262054 82.41984723986606 -1.9160318052511185 0.18187377472789423 LSTTPSPT(ph)SSLHEDGVEDFRR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 O94842-3;O94842-2;O94842;C9J919;C9JNL1 O94842-3 TOX4 TOX high mobility group box family member 4 1 LSTT(0.002)PS(0.069)PT(0.31)S(0.31)S(0.31)LHEDGVEDFRR 58.37300000000001 0.03281 0.0 41704.0 67106.0 60545.0 64952.0 61145.0 54456.0 60961.0 49184.0 49179.0 59954.0 True False 41479.470297749984 69339.58264356629 69069.20973342605 73174.91654032138 68931.45331519104 50691.58489563555 58012.08353636514 52854.35983129145 37059.49441483785 56127.68439079819 0.7390198036488087 1.2353900467508707 1.230572942445307 1.3037223490431042 1.2281186024929251 0.9031476257364742 1.0335734346788032 0.941680748189865 0.6602712158371803 1.0 15.77642492011024 2.7314663299633084 23.967918145982765 0.9178100409722696 1.1655642563993642 0.31938535642438814 0.17358285013476038 381.1420026780875 1287677.4218183241 0.05583034825094129 0.05371613049760965 538.8480678737136 -2.7314663299633084 0.24775421542709464 LSVDYGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LSVDYGK 7 0 P68363;F8VQQ4;C9JDS9;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;; 143.0 0.0057020000000000005 2109770000.0 3578200.0 3736740.0 3375210.0 2940590.0 3105450.0 3924500.0 3745700.0 3497910.0 5006100.0 3904030.0 False True 3558935.3687753943 3861115.1319929697 3850410.230148762 3312868.3924945183 3500910.6500557666 3653208.552279305 3564506.181036448 3758941.8062270796 3772413.7333032363 3654871.4629917564 0.9737511715014372 1.0564298009080706 1.053500860190838 0.9064254177033942 0.957875177145091 0.9995450152681731 0.9752753871455336 1.0284744194943958 1.032160438883195 1.0 21.801389238712513 -0.8829201455680117 6.442463348624023 1.0000000000012277 0.9988385684830624 0.0 0.04438089322575537 0.0 1.1647511239758965e-18 0.04451018974856269 0.010491151709048137 0.1309422666538899 0.8829201455680117 -0.001161431518165279 LSVDYGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSVDYGKK 8 1 P68363;F8VQQ4;C9JDS9;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 94.85 0.016142 4048400000.0 4250500.0 5231900.0 4663000.0 4171000.0 4483400.0 6322900.0 7119300.0 6066700.0 11496000.0 7130100.0 False True 4227615.780274948 5406040.6287496565 5319509.86847742 4699048.172337732 5054334.4148062365 5885812.805505622 6774912.260632924 6519427.9600783875 8662964.838507812 6675050.913614273 0.6333458478425094 0.8098875497299394 0.7969242388290816 0.7039718847317954 0.7571978821161555 0.8817629830359885 1.0149603873155448 0.97668587767346 1.2978125486412453 1.0 22.670347410250013 2.2279238839623936 1.1660233250618355 1.1116057004959 0.7383051696924686 0.7493514348695358 0.09159650632992829 0.23894051415292164 0.6238579035402652 0.0593776050910363 0.03332013686756154 169.0144684750922 -2.2279238839623936 -0.3733005308034313 LSVEEFFMDLHNFR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSVEEFFMDLHNFR 14 0 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ;; 212.83 1.8862e-09 995139000.0 608851.0 696503.0 667180.0 636022.0 605443.0 697705.0 665427.0 570058.0 776661.0 685174.0 False True 605573.0138657052 719685.6813100451 761113.1447674808 716542.3199871944 682542.5773081885 649474.2955709082 633237.7538320043 612598.6226558709 585263.3032742105 641445.6087130265 0.9440753910229509 1.1219746016408103 1.186559132105606 1.1170741684939418 1.064069296035275 1.012516551284824 0.9872041295948846 0.9550281650301836 0.9124129861118885 1.0 19.2909674118222 2.5592577038053426 1.5757028538201665 0.9555531170290025 1.1001423466375195 0.4804763644197071 0.0609816885852284 0.31924219023992245 1.6009829115188057 0.027874949874804607 0.02310371232105002 362.4580117433192 -2.5592577038053426 0.14458922960851706 LSVHDMKPLDS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSVHDMKPLDSPGR 14 1 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 1 LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR 216.16 3.7743e-12 3491200000.0 3249510.0 4138260.0 3967910.0 3966550.0 4016540.0 5071600.0 4784690.0 4532940.0 5768260.0 4734780.0 True False 3232014.999214501 4275999.482469008 4526557.2383080125 4468714.823300462 4528022.561102253 4721012.229262252 4553236.265409204 4871211.000602923 4346749.613724 4432602.286750903 0.7291461742180275 0.9646702333863829 1.0211963414443794 1.008147028362436 1.0215269198945645 1.0650656034206836 1.0272151595957248 1.0989506130886197 0.9806315415927302 1.0 22.07972249246971 5.197983014349013 1.2911013053393154 1.0386756377031607 0.16347936926670392 0.8822094773556471 0.03256541040587963 1.167344126546559 0.7544575265931248 0.008940687942867072 1.800206177655139 157754.9569098672 -5.197983014349013 -0.8751962684364568 LSVHDMKPLDS(ph)PGRR ddPTM_BT-474_Trastuzumab_2h_R1 10 LSVHDMKPLDSPGRR 15 2 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 1 LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR 182.15 2.9151e-07 9131221000.0 5939799.0 7773910.0 7600350.0 7771590.0 7716300.0 9574760.0 9865330.0 8949570.0 11089060.0 9517980.0 True False 5907819.782157709 8032659.894922175 8670413.21657354 8755472.497160915 8698925.066906672 8912879.377760662 9388106.298679624 9617432.358395632 8356309.748791184 8910534.367647342 0.6630152063166955 0.9014790318398207 0.9730519920392606 0.9825979156705315 0.9762517833375978 1.0002631727814029 1.0535963289436676 1.0793328392643788 0.9378011917143314 1.0 23.08708052255711 5.281026056565478 0.998558315603378 1.0170592294379175 1.1744077711671197e-12 0.8803628854813996 0.03775991152562162 1.610037367373933 0.604839022590459 0.012307650434512917 2.2732997716258154 190996.78483467962 -5.281026056565478 -1.017059229436743 LSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 5 LSVPTSDEEDEVPAPKPR 18 1 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 LSVPT(1)S(1)DEEDEVPAPKPR;LSVPT(1)S(1)DEEDEVPAPKPR;LSVPT(1)S(1)DEEDEVPAPKPR;LS(0.057)VPT(0.96)S(0.983)DEEDEVPAPKPR;LS(0.005)VPT(0.995)S(1)DEEDEVPAPKPR 208.47 1.4400000000000001e-15 2354271000.0 2531670.0 2524910.0 2168930.0 2221620.0 2305170.0 3394910.0 3077630.0 3090110.0 4461450.0 3247040.0 True False 2518039.7700149803 2608950.1030096747 2474296.491322484 2502876.864212171 2598719.735686959 3160227.8624585383 2928753.279211679 3320709.6994606378 3361985.4278671467 3039811.127269194 0.8283540208884802 0.8582605937604478 0.8139638904293575 0.8233659130199394 0.8548951322582701 1.0396132292921503 0.963465543282854 1.0924065872618172 1.1059849731148845 1.0 21.53555025673741 2.757885849433379 3.3590395236966697 1.046196720261806 0.8314313329783972 0.8677078563794189 0.03995807359766857 0.08514205304493834 2.019228590075767 0.013616862344664337 0.013799974695550882 572.6454962633514 -2.757885849433379 -0.21476538728340888 LSVPT(ph)SDEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LSVPTSDEEDEVPAPKPR 18 1 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 LSVPT(0.771)S(0.229)DEEDEVPAPKPR 292.27 2.114e-48 253840000.0 274190.0 253550.0 218370.0 238320.0 227390.0 298690.0 295990.0 276920.0 332210.0 311640.0 True False 272713.7915053731 261989.2584757884 249114.59789393411 268491.2875644997 256346.76865387708 278042.2633406302 281671.8329083954 297585.17657126725 250341.2968859326 291750.868391573 0.9347488595624355 0.897989644110193 0.8538606903462077 0.920275881421352 0.8786495480446064 0.95301263325618 0.9654532802635909 1.0199975691995669 0.8580653016255546 1.0 18.15437742453345 2.615486117169809 4.353340559937354 0.9678483478009674 0.896171497668936 0.320965216470375 0.04475986082566096 0.25057298999845296 7.753714470267928 0.01457462104123564 0.013643113712161703 412.5590488792395 -2.615486117169809 -0.0716768501320314 LSVPTS(ph)DEEDEVPAPK ddPTM_BT-474_Trastuzumab_2h_R1 3 LSVPTSDEEDEVPAPK 16 0 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 LSVPT(0.048)S(0.952)DEEDEVPAPK;LSVPT(0.048)S(0.952)DEEDEVPAPK;LSVPT(0.008)S(0.992)DEEDEVPAPK 348.23 4.9267999999999995e-73 296170000.0 600660.0 546430.0 439230.0 393790.0 407020.0 633730.0 578370.0 544280.0 667600.0 593150.0 True False 597426.1132996 564617.5922260896 501069.7661444007 443643.77362380165 458851.5844034517 589921.7367399572 550392.0335120409 584896.9373978385 503078.92538168235 555294.6591787367 1.075872248047864 1.0167891639028928 0.9023493344694996 0.7989339826893649 0.8263209033598102 1.0623580237786419 0.9911711276424904 1.053309135482921 0.9059675202454138 1.0 19.082893994599473 2.7207214946749887 24.78339487017981 1.0088026046329952 0.9210482883977423 0.1716847721269018 0.08554767090602453 1334.3509425354525 1853773.5570018394 0.03014616297537325 0.0284812634815219 525.6800490130888 -2.7207214946749887 -0.08775431623525287 LSVPTS(ph)DEEDEVPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 7 LSVPTSDEEDEVPAPKPR 18 1 Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 LSVPT(0.212)S(0.788)DEEDEVPAPKPR;LSVPT(0.005)S(0.995)DEEDEVPAPKPR;LSVPT(0.124)S(0.876)DEEDEVPAPKPR;LSVPT(0.015)S(0.985)DEEDEVPAPKPR;LSVPT(0.027)S(0.973)DEEDEVPAPKPR;LSVPT(0.108)S(0.892)DEEDEVPAPKPR;LSVPT(0.004)S(0.996)DEEDEVPAPKPR 264.85 5.9924e-31 22367380000.0 10528930.0 10583270.0 9791060.0 9290170.0 8590030.0 11667680.0 11932400.0 10422950.0 13892320.0 12585620.0 True False 10472243.410754094 10935527.7442282 11169556.142580869 10466304.569457423 9683919.403403224 10861120.744364413 11355184.225805413 11200763.455667673 10468743.883550707 11782394.95650863 0.8888043092605035 0.9281243571102139 0.9479869062113532 0.8883002656158462 0.8218973679925572 0.9218092573246067 0.9637416049724912 0.950635545405846 0.8885072960287875 1.0 23.490129483574595 2.4770548112305972 24.901551990194797 0.9470415024149721 0.8966728916505791 0.3009019906876784 0.039835139660807026 3.226502656052372 1208058.3339124126 0.014216919703653123 0.01201357915646422 299.9541059745596 -2.4770548112305972 -0.05036861076439303 LSVQSNPS(ph)PQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LSVQSNPSPQLR 12 0 O75152;E9PBY7;E9PQ61;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR;LSVQS(0.008)NPS(0.992)PQLR 191.63 5.3664999999999985e-06 577090000.0 629213.0 705726.0 647249.0 716254.0 673933.0 706854.0 723612.0 683989.0 830620.0 753624.0 True False 625825.3871201368 729215.6632896239 738376.0332108401 806931.6829608236 759754.3728361547 657990.8467353386 688608.12309372 735031.7324057664 625924.8307377669 705527.0711100332 0.8870324226333389 1.0335757381248611 1.046559463762495 1.1437288744870506 1.0768606959911595 0.9326231036040842 0.9760194205026123 1.0418193184980307 0.8871733720337266 1.0 19.428341914604367 2.7443752121391607 24.744053048557976 0.97674905948743 1.043729758213509 0.1873243766614343 0.07106956672869172 781.7568483315483 3326770.642971682 0.022845689238533265 0.02362249192682262 555.1050932645296 -2.7443752121391607 0.06698069872607904 LSVVEYDPGTHDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LSVVEYDPGTHDLK 14 0 Q10570;E9PIM1 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 98.582 0.0025206 402660000.0 704270.0 612100.0 600820.0 628440.0 590320.0 764730.0 664220.0 670070.0 955310.0 786520.0 False True 700478.288571752 632473.3784777361 685410.2335789417 708000.4395645957 665493.7528992323 711866.0150807875 632089.1410331929 720074.0259465165 719886.650998165 736323.62022635 0.9513185090496229 0.8589611430410317 0.9308546062507715 0.9615343309874432 0.9038060638264678 0.9667841632758648 0.8584393107461161 0.9779314504744011 0.9776769768391619 1.0 19.489980456317888 1.593564360302563 9.847550225643333 0.9845644059650825 0.9196443465350801 0.4152783608967844 0.036162182028631695 0.09664051735396824 25.221237275132903 0.018004320528732673 0.00865243851257011 39.22512717315463 -1.593564360302563 -0.06492005943000245 LSYAGGRPPS(ph)YAGS(ph)PVHHAAER ddPTM_BT-474_Trastuzumab_2h_R1 2 LSYAGGRPPSYAGSPVHHAAER 22 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 LSYAGGRPPS(0.997)Y(0.003)AGS(1)PVHHAAER;LS(0.078)Y(0.003)AGGRPPS(0.917)Y(0.073)AGS(0.93)PVHHAAER 136.34 6.187e-06 1116080000.0 354970.0 413090.0 327760.0 364810.0 369610.0 373660.0 336410.0 264610.0 477160.0 387980.0 True False 353058.88096087426 426839.45093182195 373905.7590590093 410994.90859518835 416677.64264989377 347829.76370102813 320136.5630890007 284356.5418623541 359570.3116164218 363218.7842336107 0.9720281447057486 1.1751579749171024 1.0294229684402145 1.131535389785484 1.1471808748247447 0.9576315399957815 0.8813876841873329 0.7828795046003596 0.9899551653836208 1.0 18.470479289455273 2.539622207239118 3.8334937027634286 0.88499723234429 1.0938642349712935 0.514914180242594 0.08060758939172966 0.15614288566640994 4.540802627398302 0.026987291387459117 0.02449798181706199 346.4353552278064 -2.539622207239118 0.20886700262700353 LSYAGGRPPSYAGS(ph)PVHHAAER ddPTM_BT-474_Trastuzumab_2h_R1 8 LSYAGGRPPSYAGSPVHHAAER 22 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LSYAGGRPPSYAGS(1)PVHHAAER;LSYAGGRPPS(0.001)YAGS(0.999)PVHHAAER;LSYAGGRPPSYAGS(1)PVHHAAER;LSYAGGRPPSYAGS(1)PVHHAAER;LSYAGGRPPSYAGS(1)PVHHAAER;LSYAGGRPPSYAGS(1)PVHHAAER;LSYAGGRPPSYAGS(1)PVHHAAER;LSYAGGRPPSYAGS(1)PVHHAAER 219.43 6.6355e-26 27859910000.0 4522530.0 5220360.0 5158130.0 5550610.0 5204590.0 5438670.0 5139800.0 3799590.0 6821700.0 5456500.0 True False 4498181.200980317 5394116.526825738 5884349.868730311 6253316.656883128 5867363.686478215 5062707.544152083 4891168.238057267 4083134.6997270803 5140583.441096793 5108261.498455316 0.8805698773135477 1.0559593569077976 1.1519280816985733 1.2241575061836723 1.148602844285173 0.9910822978978253 0.9575015373696716 0.7993198274915599 1.006327386068871 1.0 22.284400949663997 2.442108966613362 2.8270927721613024 0.9111001749057152 1.0998577207693476 0.31764833007858684 0.10129185578048708 0.2753292775361462 4.507755645562116 0.040246919354927524 0.033588928793301054 276.7635971728441 -2.442108966613362 0.18875754586363247 LSYAS(ph)AESLETMSEAELPLGFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 LSYASAESLETMSEAELPLGFSR 23 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 LS(0.114)Y(0.062)AS(0.729)AES(0.096)LETMSEAELPLGFSR;LS(0.021)YAS(0.871)AES(0.108)LETMSEAELPLGFSR;LS(0.014)YAS(0.824)AES(0.161)LETMSEAELPLGFSR 269.63 4.4428e-45 132041000.0 87287.0 96509.0 89642.0 98604.0 86007.0 98294.0 92675.0 91847.0 117354.0 96934.0 True False 86817.05649049747 99721.24372407762 102262.81441776818 111087.25628990406 96959.4816465718 91499.16713918757 88191.95619712006 98701.08952961593 88433.6791630346 90747.5891306274 0.9566871949130011 1.0988858732162352 1.1268929058882775 1.2241345181082284 1.0684524247470932 1.0082820713559488 0.9718380074006306 1.087644206035488 0.9745016921136933 1.0 16.469571695434816 2.9964002586573004 24.993994437788007 1.0190199895266139 1.1086354446054412 0.28964429750554377 0.06800813173508971 207.1625589430523 1438405.1135569776 0.02047846577700509 0.02399147549266771 991.74554589549 -2.9964002586573004 0.08961545507882729 LSYLEEAVMHLDHSDPITR ddPTM_BT-474_Trastuzumab_2h_R1 9 LSYLEEAVMHLDHSDPITR 19 0 Q6P2E9;Q6P2E9-2;I3L0V0;I3L3M2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ;;;;;;;; 264.23 1.4767999999999996e-31 635600000.0 310956.0 377074.0 340863.0 343445.0 332076.0 359505.0 357550.0 95804.20000000001 389205.0 260018.7 False True 309281.84744645975 389624.6801439533 388853.5475656916 386925.10178579047 374363.91023134184 334653.26553374203 340253.94052635855 102953.59588787038 293290.64282980433 243424.0839527909 1.2705474430641839 1.6006003753495328 1.597432518801652 1.5895103537118775 1.537908263440133 1.3747746734815438 1.3977825653124223 0.4229392351655597 1.2048546637919542 1.0 17.893112387272165 1.8960284894008474 7.275675766001087 0.827713522453897 1.5005400898423666 0.6396745586876711 0.20824739912742088 0.14225953769718944 8.752833943885683 0.08559831799415414 0.05311059718829822 78.70974210175929 -1.8960284894008474 0.6728265673884697 LSYLS(ph)APGSEYSMYSTDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LSYLSAPGSEYSMYSTDSR 19 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 LSYLS(1)APGSEYSMYSTDSR;LSYLS(0.995)APGS(0.005)EYSMYSTDSR 250.08 3.6273e-25 269180000.0 176801.0 193430.0 173387.0 176769.0 146109.0 192263.0 213168.0 178588.0 225814.0 179852.0 True False 175849.12306043788 199868.2006190958 197798.38249317906 199147.9372754659 164715.1150941082 178972.31134842042 202856.24945916017 191915.14341148883 170165.16545257528 168373.69138095615 1.0443978606050044 1.1870512488015799 1.1747582467955024 1.1827734822590608 0.9782710929668329 1.0629470072226677 1.204797779245601 1.1398166889224317 1.0106398693104959 1.0 17.361307207381753 1.2324524480438892 22.951818448721088 1.0053196064023682 1.1258488512156952 0.3093054553337452 0.06944999353071935 68.54005350167338 257506.8350665898 0.06243647721997529 0.01732371882082233 17.078607120105083 -1.2324524480438892 0.12052924481332705 LT(ph)IHMDEELR ddPTM_BT-474_Trastuzumab_2h_R1 3 LTIHMDEELR 10 0 O94915;A0A669KB90;A0A6E1XQM6;F2Z2S2 O94915 FRYL Protein furry homolog-like 1 LT(1)IHMDEELR;LT(1)IHMDEELR;LT(1)IHMDEELR 101.11 0.010089 6974000000.0 1686810.0 3896680.0 3205400.0 3607430.0 3440790.0 2571950.0 2193190.0 1973300.0 1292400.0 2456360.0 True False 1677728.402382211 4026378.638207197 3656692.458163746 4064130.2681218716 3878954.2113398723 2394157.150219075 2087097.0209005852 2120557.6662143683 973905.3372727461 2299593.001804403 0.7295762341708996 1.7509092413517746 1.590147671911716 1.7673258985102596 1.6868003200114998 1.0411221239325703 0.9075940913296047 0.9221447728143404 0.42351204604839193 1.0 21.132947114738826 2.5562888346764576 3.390363209503936 0.8295509469110058 1.5363997286319024 0.519496660545222 0.3148806166503511 0.19609454592326492 4.343392191196747 0.10808108186554115 0.09818188063673289 359.9886719369043 -2.5562888346764576 0.7068487817208966 LT(ph)PPPADLPLALPAHGLWSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPPPADLPLALPAHGLWSR 20 0 Q15742 Q15742 NAB2 NGFI-A-binding protein 2 1 LT(1)PPPADLPLALPAHGLWSR;LT(1)PPPADLPLALPAHGLWSR 172.49 2.309e-11 624540000.0 325650.0 272964.0 266099.0 256636.0 220523.0 331570.0 309630.0 258050.0 366160.0 348920.0 True False 323896.73658311646 282049.4417297772 303563.426226029 289126.0912865184 248605.2969077747 308649.3463318255 294652.0139985359 277307.00135134923 275924.7742926253 326651.6268745588 0.991566274082877 0.8634564120450262 0.9293185805641306 0.8851206223979683 0.7610716630633664 0.9448884405842969 0.9020374911883987 0.8489380689900591 0.8447065668483149 1.0 18.31739329947516 LT(ph)TPTYGDLNHLVSATMSGVTTCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTTPTYGDLNHLVSATMSGVTTCLR 25 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;Q13885;Q9BVA1;P04350 Q5JP53;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain 1 LT(0.499)T(0.499)PT(0.002)Y(0.001)GDLNHLVSATMSGVTTCLR 120.57 0.0007364 74099000.0 34469.0 35750.0 30545.0 32935.0 24499.0 35614.0 50675.0 41573.0 38748.0 36572.0 True False 34283.422733865904 36939.91713866863 34845.470498100556 37104.56762309838 27618.802433050405 33152.0880063384 48223.65665270093 44675.38836341652 29199.07459659888 34237.94364913553 1.001328324072159 1.0789175166949994 1.0177442563487706 1.0837265229284654 0.8066723491364748 0.9682850216144758 1.408485776683569 1.3048502217668823 0.8528279296159226 1.0 15.063308434784911 2.316355210955356 24.999999999822485 1.1903776004161049 0.9935024851591714 0.1423544157744404 0.1620141821079085 47.80256710495488 15359.425695171964 0.0572643018506986 0.047910733710868424 207.18352171595583 -2.316355210955356 -0.19687511525693346 LTAEDLFEAR ddPTM_BT-474_Trastuzumab_2h_R1 7 LTAEDLFEAR 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;;; 229.55 3.6559e-09 1021779000.0 941623.0 1127868.0 1091595.0 1058282.0 1007645.0 1118465.0 1164360.0 1028927.0 1191158.0 1119233.0 False True 936553.4063921513 1165408.404569396 1245282.0876861713 1192260.3926919028 1135962.6179701653 1041148.147133409 1108035.458512853 1105710.7575254382 897613.0715994524 1047802.591716419 0.8938261976027096 1.1122404294308201 1.188470135053072 1.1378673827661046 1.0841380112539427 0.9936491428484547 1.057484937785624 1.0552662937339743 0.8566623891710946 1.0 19.99893550492231 1.3488047621381185 6.644498026039355 0.9297766596057081 1.0717560880329509 0.3049282463841425 0.08253864245964555 0.24261392303702745 12.717897235898954 0.05728370109382193 0.02067835183978875 22.32568342103964 -1.3488047621381185 0.14197942842724276 LTAEEMDER ddPTM_BT-474_Trastuzumab_2h_R1 3 LTAEEMDER 9 0 P46940;H0YLE8;A0A0J9YXZ5;A0A087X225 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ;; 148.52 0.00020894 1135720000.0 940370.0 1164860.0 1018830.0 1111510.0 926520.0 1070790.0 1097540.0 949320.0 1265960.0 1051330.0 False True 935307.1524049278 1203631.660927261 1162272.4081708887 1252227.052034312 1044506.8300857105 996768.8076685306 1044447.7971900427 1020163.0789492838 953981.1209948978 984233.2193111023 0.950290169091814 1.2229130629930607 1.1808912617117333 1.2722869208893268 1.0612391551026856 1.0127364003891297 1.0611791765381446 1.0365054327909498 0.9692632826014763 1.0 19.908640684794932 3.018855456286686 23.775462312654597 1.02480302898258 1.1635297627552679 0.3965065107054908 0.08150623860240218 135.44622603931137 170786.53267750243 0.023021479370056847 0.02751063953395898 1044.3725689064988 -3.018855456286686 0.13872673377268785 LTAIIEEAEEAPGARPQLQDAWR ddPTM_BT-474_Trastuzumab_2h_R1 5 LTAIIEEAEEAPGARPQLQDAWR 23 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ;;;; 211.03 5.0826e-25 2670010000.0 607024.0 651508.2 575285.0 654019.0 576045.0 765154.0 737780.0 563627.0 670499.0 744528.0 False True 603755.8502307071 673193.2565919756 656280.1275331402 736817.7383419218 649400.9162637861 712260.7049587755 702090.7628067037 605687.7087799138 505263.50567629165 697011.5856175098 0.866206333852853 0.9658279295251131 0.9415627244584694 1.0571097432894838 0.931693144940276 1.0218778563454667 1.0072870771361628 0.8689779643236654 0.7248997234797165 1.0 19.41082311098103 1.6232565985748606 5.393795131593837 0.8426450884473038 0.9724236116200679 0.2611214871285441 0.07972409239331996 0.15555876085935477 9.725553042725721 0.04091563175661681 0.01939558761662497 42.0007067693183 -1.6232565985748606 0.12977852317276406 LTALADLEDWEELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTALADLEDWEELEK 15 0 Q9H269-2;Q9H269 Q9H269-2 VPS16 Vacuolar protein sorting-associated protein 16 homolog 0 ; 245.15 1.0332e-17 22454000.0 86442.0 82048.0 74184.0 63243.0 75886.0 87331.0 87952.0 83335.0 122752.0 91264.0 False True 85976.60587660897 84778.91808093665 84628.46238111281 71249.55731554909 85549.63228843884 81294.0135250614 83697.42575073209 89553.88086655569 92501.41439252884 85439.45338495862 1.0062869373617145 0.9922689661760143 0.9905080033671122 0.8339186932121967 1.0012895553414158 0.9514809646403121 0.9796109693448343 1.048156060445038 1.0826545668047716 1.0 16.38261479669041 1.798611034210148 3.5233314319846203 1.0498213828098155 0.9614590224802503 0.33945239521456283 0.05036306861162827 0.24731484365846215 5.641174246170928 0.026850345851211214 0.013802982945664162 62.89426326335797 -1.798611034210148 -0.08836236032956524 LTALDYHNPAGFNCK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTALDYHNPAGFNCK 15 0 Q9Y224;G3V4C6;G3V4E7 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 ; 173.44 9.695e-07 820810000.0 1391040.0 1220980.0 1099340.0 1017850.0 980430.0 1365430.0 1044990.0 1196160.0 1517350.0 1258140.0 False True 1383550.7951990745 1261619.5812020053 1254117.516365425 1146709.705637487 1105281.9490361065 1271041.037976489 994439.8414505357 1285423.533177408 1143419.423948316 1177844.4280521537 1.1746464662460605 1.0711258220140276 1.064756504761335 0.9735663542033683 0.9383938342892647 1.0791247194491196 0.8442879363067318 1.0913355809673115 0.9707728768893803 1.0 20.167717567151776 4.573280604181703 1.175588325504344 0.9894405071267668 1.221977161201033 0.43221204041778893 0.06723817026198448 1.1032028525561708 1.58947366940937 0.018638394485473653 0.29331164550364436 37435.23848427573 -4.573280604181703 0.23253665407426627 LTALDYHNPAGFNCKDETEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTALDYHNPAGFNCKDETEFR 21 1 Q9Y224;G3V4C6;G3V4E7 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 76.492 0.006612699999999999 375940000.0 445210.0 797740.0 768530.0 836590.0 658480.0 704450.0 641350.0 576720.0 542400.0 686070.0 False True 442813.03882748116 824292.2936559861 876732.343817489 942502.2082224955 742333.5248832615 655753.0295969305 610325.4503050768 619757.7749248217 408732.78778763406 642284.4252259212 0.6894344957402996 1.2833758087253078 1.365021958159894 1.4674218635941139 1.1557707080039321 1.0209698442652906 0.9502417096450643 0.9649272979129521 0.6363735001730173 1.0 19.292852787350707 2.4881961811231053 1.803139065290335 0.8831863807353646 1.2238946409755014 0.3117598265496495 0.21323288225910833 0.4251761553063417 2.800321377026382 0.09407511488977878 0.07550552075805597 307.7486674559136 -2.4881961811231053 0.3407082602401368 LTAS(ph)PSDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTASPSDPK 9 0 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 LT(0.238)AS(0.671)PS(0.091)DPK;LT(0.12)AS(0.871)PS(0.009)DPK 94.616 0.0090225 368290000.0 803310.0 694100.0 603030.0 617120.0 604730.0 873810.0 826350.0 754730.0 1221250.0 838210.0 True False 798985.0682161322 717202.6989076897 687931.3823692771 695247.3287252614 681738.7809844712 813405.5714274872 786376.2935364457 811051.7850412863 920289.301411593 784714.7201723148 1.0181853961407579 0.9139661592561941 0.8766643019239079 0.8859873669409345 0.8687727698478357 1.0365621422889482 1.0021174234679402 1.0335625982180991 1.1727692596482802 1.0 19.581808737872638 2.704622391125634 9.967973816723896 1.045770011780389 0.909312697103503 0.5662125467507957 0.05957439096772235 0.45306718736106977 130.81370235085126 0.01952846260967311 0.018501344827450222 506.5500833194329 -2.704622391125634 -0.13645731467688593 LTATEGPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 LTATEGPGSPR 11 0 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 LTATEGPGS(1)PR;LTATEGPGS(1)PR;LTATEGPGS(1)PR 193.46 9.8726e-07 1594250000.0 1475780.0 1666850.0 1518290.0 1546390.0 1368500.0 1639430.0 1684640.0 1424570.0 1825040.0 1517140.0 True False 1467834.5644545706 1722330.0946178962 1732052.0347867452 1742162.8154450592 1542770.3632650075 1526100.0629031085 1603147.5272502445 1530878.647219886 1375283.3462830808 1420314.826311098 1.0334571865780582 1.2126396646095747 1.2194845837702788 1.2266032735642691 1.0862171785335484 1.074480132596208 1.128726883330513 1.0778445868906046 0.9682947194566891 1.0 20.43777932160015 1.800179027265594 0.7130622539697333 0.9854360830167465 1.168675070282094 0.48887189032070055 0.0626727745611272 0.5713275602756992 0.5712641666021588 0.05862376663443284 0.029365367394269398 63.12174948118183 -1.800179027265594 0.1832389872653476 LTATPT(ph)PLGGMTGFHMQTEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 LT(0.013)AT(0.424)PT(0.562)PLGGMTGFHMQTEDR 197.44 3.3488e-21 630960000.0 236370.0 227710.0 215020.0 247410.0 234350.0 205820.0 211420.0 230310.0 233280.0 215210.0 True False 235097.4101831757 235289.1896963983 245292.94701265593 278732.08063248085 264193.0833987247 191592.14784816548 201192.80689716907 247496.90169048356 175791.26979184948 201475.11354944928 1.1668806436754995 1.1678325206088038 1.217485091291199 1.3834566250986127 1.3112938801440712 0.9509469654729433 0.9985988013739924 1.2284241826707738 0.8725210111307566 1.0 17.62024212075269 2.743263195293733 24.99775446911452 1.0400239732653984 1.250534476658451 0.555197475613154 0.10540133670814358 367.4654053072259 1953358.2744637697 0.03497845940885858 0.03601881282208277 553.6855573743762 -2.743263195293733 0.21051050339305255 LTDCVVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTDCVVMR 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 113.14 0.0067622 313340000.0 351070.0 293840.0 219670.0 294750.0 226580.0 257730.0 253290.0 249970.0 334000.0 270690.0 False True 349179.8781275438 303620.2867699693 250597.6265941315 332065.31977860193 255433.61995512267 239913.7317311615 241037.39503823651 268624.0307219408 251690.1753707037 253414.33245063177 1.3779010632540616 1.1981180536784288 0.9888849780939324 1.3103651895588515 1.0079683239892687 0.946725188788995 0.9511592841150512 1.0600190925439155 0.9931962921621099 1.0 17.951138596274298 7.999999999998094 0.44536870157845754 0.9951079896994862 9.214589013058285 0.5863006126221869 0.0949303626858103 61.447938155488394 0.7483141419464207 0.057994441766821 457.8457787548256 99999999.99956112 -7.999999999998094 8.2194810233588 LTDCVVMRDPASK ddPTM_BT-474_Trastuzumab_2h_R1 8 LTDCVVMRDPASK 13 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;; 195.1 4.1184e-07 18026970000.0 9567710.0 11281400.0 9984550.0 10402640.0 10008780.0 11906150.0 12261170.0 11084470.0 15308710.0 12363460.0 False True 9516198.512432508 11656894.579249684 11390287.852735642 11719613.157393305 11283338.806313153 11083105.874562416 11668050.364882024 11911649.437198171 11536083.546704326 11574413.397909353 0.8221754472802386 1.0071261651458923 0.9840920192804787 1.0125448914335633 0.974851892567724 0.9575522744473876 1.0080899967673165 1.0291363395876056 0.9966883979440418 1.0 23.46443574241652 4.740413479376895 24.994986554485042 0.9977724391034352 0.8221753879521777 0.8800973998574959 0.019318821931737378 56.37078892122875 760379.4621382037 0.005131137746650201 0.03314364935339913 55006.432517594476 -4.740413479376895 -0.17559705115125746 LTDDHVQFLIYQILR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTDDHVQFLIYQILR 15 0 Q16539-2;Q16539;B4E0K5;Q16539-5;Q16539-3;Q16539-4;E7EX54;B5TY33 Q16539-2 MAPK14 Mitogen-activated protein kinase 14 0 ; 194.23 6.0226e-08 338160000.0 447180.0 559290.0 559350.0 541080.0 493010.0 512620.0 500840.0 464430.0 648380.0 538160.0 False True 444772.4325663683 577905.6295520561 638101.6180426441 609580.672521818 555791.9012007911 477183.7859776831 476612.4558054014 499088.1249277546 488595.436846877 503814.1680580438 0.8828104899882979 1.1470610915520667 1.2665416308203727 1.209931580271853 1.103168462576382 0.947142450989404 0.9460084412522742 0.9906194715632833 0.9697929669786232 1.0 18.94253216796524 2.8318202514338533 4.569953740157592 0.9699587717169028 1.1395971659071003 0.38625539185227287 0.09478563475522703 0.23225650647483606 8.308039762674992 0.03063947946557402 0.03251503838967352 678.9225776583596 -2.8318202514338533 0.16963839419019744 LTDEDFS(ph)PFGSGGGLFSGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LTDEDFSPFGSGGGLFSGGK 20 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 LTDEDFS(1)PFGSGGGLFSGGK;LTDEDFS(1)PFGSGGGLFSGGK;LTDEDFS(1)PFGSGGGLFSGGK;LTDEDFS(1)PFGSGGGLFSGGK 344.48 3.9713999999999985e-81 1577010000.0 4900500.0 4837900.0 4375740.0 4290820.0 4429610.0 5237530.0 4888890.0 4826510.0 6411150.0 5256670.0 True False 4874116.252496733 4998926.57692769 4991806.157386105 4834037.372052312 4993694.577144546 4875471.878919456 4652395.713326553 5186688.684721184 4831207.987508643 4921184.82013839 0.9904355212490611 1.015797365803285 1.0143504744952312 0.9822913685888295 1.0147342072399788 0.9907109887375357 0.945381220857241 1.0539512077449933 0.9817164288848602 1.0 22.23057426870019 1.7160491101089441 24.99999999923388 1.0160605389547 0.9953397356690887 0.08671856784892473 0.025963092027631966 1.9204781920966894 2123.908703955998 0.011642757219214454 0.006456443547445721 52.00548011120378 -1.7160491101089441 -0.02072080328561121 LTDEDFSPFGS(ph)GGGLFSGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTDEDFSPFGSGGGLFSGGK 20 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 LTDEDFSPFGS(1)GGGLFSGGK;LTDEDFS(0.002)PFGS(0.998)GGGLFSGGK;LTDEDFSPFGS(1)GGGLFSGGK 259.56 2.8099999999999998e-36 205210000.0 385609.0 363878.0 342759.0 337579.0 356719.0 455934.0 438853.0 428461.0 610380.0 469911.0 True False 383532.92398918775 375989.459261104 391016.487885364 380316.46678724495 402145.05021083774 424416.355733192 417624.0038087371 460434.93550087354 459960.02767296403 439920.877668952 0.8718225104965417 0.854675188987149 0.8888336692663416 0.8645110657226858 0.9141304053167916 0.9647561124675074 0.9493161725391136 1.0466312441014876 1.0455517140041075 1.0 18.746884544415774 2.4590728045222723 0.9587824571765269 1.035576181877279 0.8662994272759204 0.8915546125387267 0.022749929328407265 0.15667752255632453 0.28877460219139717 0.014851023056116805 0.010322514909955425 287.7880818233271 -2.4590728045222723 -0.16927675460135871 LTDEEAQHVLEVVQR ddPTM_BT-474_Trastuzumab_2h_R1 6 LTDEEAQHVLEVVQR 15 0 Q9BV36-2;Q9BV36-5;C9JKV5;C9JI01;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 ;;;;; 190.87 1.9866e-07 3032002000.0 2069663.0 2301973.0 2179749.0 2118003.0 2151250.0 2230653.0 2212066.0 2005347.0 2421143.0 2091697.0 False True 2058520.1643691768 2378592.7797329347 2486638.7124820487 2386141.9626362612 2425198.9360422706 2076453.20850235 2105059.916667264 2154996.176085734 1824484.7493040487 1958203.1066681 1.0512291382642973 1.2146813431320367 1.2698574034606076 1.218536501403219 1.2384818141611307 1.0603870463853229 1.074995698607098 1.1004967609067269 0.9317137446525788 1.0 20.901098979713232 2.698272880473919 7.2415228422079 1.04763010729737 1.2044904362901498 0.5792637102264853 0.06972608014048552 0.192648353255615 29.463479259979906 0.022845114392107353 0.021701261434084972 499.19805030539015 -2.698272880473919 0.1568603289927799 LTDEGAVHVNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTDEGAVHVNDR 12 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 0 147.26 0.00034712 0.0 210050.0 265750.0 237800.0 254040.0 235830.0 244830.0 219720.0 213540.0 276540.0 255030.0 False True 208919.1141387488 274595.32810073276 271280.17300534685 286201.43795269204 265861.55262607767 227905.4783678282 209091.3041880899 229475.43913414865 208390.42244615077 238753.7670578321 0.8750400746059993 1.1501193530245701 1.136234105741402 1.1987305644621178 1.1135386716712177 0.9545628585312492 0.8757612780930187 0.9611385066798297 0.8728256940786757 1.0 17.865163970612542 2.6875997186959624 4.691441112569364 0.925963732408173 1.106215093748523 0.4575973585816111 0.08787771990642126 0.1802650918446691 8.792621120846771 0.02848101071287968 0.02723112944839507 487.0793509982395 -2.6875997186959624 0.1802513613403499 LTDIFR ddPTM_BT-474_Trastuzumab_2h_R1 5 LTDIFR 6 0 O75340-2;O75340;A0A024QZ42;H0Y9X3;A0A087WZ38 O75340-2 PDCD6 Programmed cell death protein 6 0 ;;;; 146.21 0.025701 4538876000.0 5166900.0 5942700.0 4277170.0 4934320.0 4713590.0 5420150.0 4015630.0 4567190.0 5841320.0 5524230.0 False True 5139081.984496559 6140499.177061994 4879358.358171896 5559004.406072771 5313837.746863217 5045467.788160691 3821378.6357037127 4908016.909520896 4401804.955677838 5171668.911868748 0.9936989532919628 1.1873341626664893 0.9434784866011023 1.0748956479629053 1.0274899336011627 0.9755976018846776 0.7389062797376337 0.9490199378883705 0.8511381974928621 1.0 22.302198486681448 2.4713234239561848 24.863790711432642 0.8796062372242376 1.0444743817662603 0.434987152023663 0.08620961905179562 123.62331937749825 530147.8426376447 0.027986158951213914 0.02348153706588374 296.02161519593756 -2.4713234239561848 0.1648681445420227 LTDIINNDHENVK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTDIINNDHENVK 13 0 Q8N335;C9K0P5;C9JFA7;C9JM46 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein;Glycerol-3-phosphate dehydrogenase [NAD(+)] 0 ;; 158.81 4.1828e-05 1379080000.0 1474140.0 1332470.0 1253250.0 1117360.0 1178660.0 1622070.0 1440680.0 1437830.0 1819530.0 1547260.0 False True 1466203.3940323521 1376820.4584548748 1429696.7065557214 1258817.661434498 1328755.364534844 1509940.118842065 1370988.8044679465 1545128.1757528004 1371131.211952865 1448512.5421240681 1.0122131161407428 0.9505064115191812 0.987010236348554 0.8690416029043107 0.9173240313034399 1.0424073488710845 0.9464804512203654 1.0666998944220787 0.9465787641315602 1.0 20.46614074573909 2.7440327099075015 24.83838235254175 1.0051649882809863 0.9452691363175711 0.21803984947789612 0.04991918361503934 591.5932773967337 2685305.6563521978 0.015325215326620536 0.015856604972217823 554.6674874674576 -2.7440327099075015 -0.05989585196341518 LTDRDIIVLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTDRDIIVLQR 11 1 Q9Y314;A0A075B6F9 Q9Y314 NOSIP Nitric oxide synthase-interacting protein 0 172.13 0.00077475 0.0 132390.0 167500.0 157040.0 147640.0 166040.0 166920.0 154610.0 157270.0 196850.0 163790.0 False True 131677.22694991162 173075.1362441117 179149.86698385034 166331.20886212977 187184.20980381605 155381.2132874151 147130.92363244385 169006.2860008783 148338.95515485958 153336.78197232596 0.8587452094415061 1.1287255022434741 1.1683424203866695 1.0847443563289925 1.2207391298820842 1.0133329478341218 0.9595279210893957 1.1021901192068864 0.9674062103483534 1.0 17.22634428235328 LTDVILEADQNDSQSLELVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTDVILEADQNDSQSLELVHR 21 0 Q13572-2;Q13572;G3V588;G3V5A3 Q13572-2 ITPK1 Inositol-tetrakisphosphate 1-kinase 0 129.32 1.6707e-05 167430000.0 143500.0 190350.0 138070.0 155050.0 158470.0 162040.0 173500.0 155910.0 173850.0 179240.0 False True 142727.41194434895 196685.68468099515 157509.05587404632 174679.31410236532 178650.21517472106 150838.55620113085 165107.14216563612 167544.79589493852 131006.99697064914 167800.7497449156 0.850576723651818 1.1721382948526113 0.9386671758826207 1.0409924530605867 1.0646568352423835 0.8989146736854868 0.983947583170074 0.998474656100368 0.7807295090743102 1.0 17.35638963628639 2.737735902751743 24.987946611478122 0.9421281834280518 1.0196051307995722 0.13949973567315876 0.09852150657628515 153.19928244808077 4641727.76304583 0.02928202529223505 0.029122202652233413 546.6834201141208 -2.737735902751743 0.07747694737152033 LTEADYLSSHLTEGPHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTEADYLSSHLTEGPHR 17 0 K7EIN2;Q9BRJ7;K7ENA3;W4VSQ8;Q9BRJ7-2 K7EIN2 NUDT16L1 Protein syndesmos 0 ;;; 289.18 3.5305e-46 997620000.0 511560.0 765180.0 708670.0 739100.0 764620.0 744810.0 820460.0 425309.0 787690.0 725560.0 False True 508805.81779965875 790648.5537389213 808444.5761299366 832669.9842183692 861989.824742194 693323.0377941503 780771.2153384318 457047.71725534165 593574.3540052385 679254.1396168324 0.7490654647856492 1.1639951935882593 1.190194551609182 1.22585927071137 1.2690240286624428 1.0207122744739607 1.1494537461028433 0.6728670325265335 0.8738619603261809 1.0 19.37359192720865 1.7536104576612872 24.999999999999623 0.8224138951273849 1.122104040524333 0.36271550980142386 0.15667670765209948 4.680274475434045 7784.608786622769 0.07122648818313686 0.039498842204305044 56.703577202190836 -1.7536104576612872 0.29969014539694805 LTEDKADVQSIIGLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 LTEDKADVQSIIGLQR 16 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;; 290.5 1.4821999999999994e-45 7669250000.0 3753460.0 3872560.0 3510460.0 3562930.0 3361660.0 4152690.0 4013180.0 4147840.0 5445360.0 4288120.0 False True 3733251.7884086077 4001455.818588048 4004702.2545346892 4013996.57268456 3789747.474880121 3865624.314680779 3819047.151563614 4457372.883104746 4103423.992085672 4014448.510355768 0.9299538351975923 0.9967635176452747 0.9975722055480505 0.9998874222274761 0.9440269230266617 0.9629278603795569 0.9513254788825684 1.1103325579108563 1.0221638119159782 1.0 21.936770378729843 1.7551301827957058 24.99999999999957 1.0538653168195367 0.9710979585012066 0.48750958790477195 0.034880985950824096 4.462861493220492 6741.215388327354 0.015608414669323487 0.008655724534634217 56.90234740312611 -1.7551301827957058 -0.08276735831833004 LTEDLEYHELLDR ddPTM_BT-474_Trastuzumab_2h_R1 7 LTEDLEYHELLDR 13 0 P22059;H0YCV6 P22059 OSBP Oxysterol-binding protein 1 0 ;;;;;; 257.2 6.832299999999999e-24 7665600000.0 5381660.0 6688900.0 5882120.0 6436330.0 6155870.0 6406390.0 6345030.0 5739830.0 7177490.0 6639790.0 False True 5352685.7405186305 6911535.992974571 6710271.367696415 7251168.71806822 6939783.555799906 5963531.338319939 6038096.658531568 6168165.260866165 5408693.762938546 6216032.917589788 0.8611096195085928 1.1118885766220263 1.0795102691152194 1.1665267565667583 1.1164328837709478 0.9593789829273048 0.9713746272876538 0.9922993238037446 0.8701198714108032 1.0 22.567562713017963 2.726013278757127 24.01482126924335 0.962073801739445 1.0757961054802294 0.29816799887445256 0.08257809759511908 560.3479528139517 1072468.8329657868 0.026543643672690985 0.02519385633781776 532.1245289746878 -2.726013278757127 0.1137223037407844 LTEEETVCLDLDKVEAYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTEEETVCLDLDKVEAYR 18 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 286.68 7.1504e-40 1238020000.0 354483.0 341213.0 289540.0 299921.0 279783.0 389697.0 384647.0 327945.0 521513.0 376862.0 False True 352574.5029147641 352570.06843738613 330304.71527320467 337890.9678484067 315411.70664623636 362758.16363806545 366040.1551157663 352417.9211709672 392993.10906617314 352810.34451220895 0.9993315343466731 0.9993189653348883 0.9362104042892498 0.9577127573046942 0.8939978987359923 1.0281959394915425 1.03749836366575 0.9988877215553748 1.1138933854377777 1.0 18.428533336232682 2.589961944222383 10.13382412026296 1.0332764289258034 0.958529920838437 0.4774179002722949 0.040986864705142505 0.393004661783984 32.91852743087214 0.013280981687304431 0.01251542126526591 389.0110557587916 -2.589961944222383 -0.07474650808736638 LTEENGFWYLDQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTEENGFWYLDQIR 14 0 P18440;F5H5R8 P18440 NAT1 Arylamine N-acetyltransferase 1 0 85.837 0.01763 34266000.0 10838.0 13518.0 13058.0 15060.0 14569.0 11886.0 15705.0 19697.0 11939.0 14872.0 False True 10779.649412215003 13967.938458196439 14896.452897829342 16966.594455863404 16424.275792771587 11064.348796634413 14945.289151073866 21166.89015933936 8996.793424403695 13922.856227440217 0.774241235858606 1.0032380016010918 1.0699279411124196 1.218614498253911 1.1796628166281988 0.7946895820721008 1.0734355729120122 1.5202979771939362 0.6461887760265839 1.0 13.765167585166004 4.7149035022179 1.9621413931749854 1.1042180514270918 0.6861146519335769 0.10754437541498374 0.2258441202038955 1.379322436961772 5.883647746691832 0.0588289034367544 1.0248125522106653 51868.47772948763 -4.7149035022179 -0.41810339949351494 LTEGCSFR ddPTM_BT-474_Trastuzumab_2h_R1 6 LTEGCSFR 8 0 P42677;C9J1C5;H0YMV8;Q71UM5 P42677;H0YMV8 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 0 ;;;;; 175.24 0.00062186 4007550000.0 1287650.0 1649720.0 1474540.0 1515890.0 1492450.0 1577660.0 1470300.0 1349240.0 1834910.0 1550190.0 False True 1280717.4354713648 1704629.9329232003 1682142.4150685621 1707801.5185722962 1682504.6610557998 1468600.0776121696 1399175.9719085568 1449927.1401018952 1382721.017034305 1451255.5470155682 0.8824892611815291 1.1745897794697036 1.1590945636885253 1.1767751875845034 1.1593441723725249 1.011951396590538 0.9641141250318661 0.9990846498975285 0.9527756981723854 1.0 20.468870150721 2.606906927254521 4.761414595825504 0.9814089247880745 1.119941807595702 0.36699706154717837 0.08223827788266437 0.23732625920836925 8.182353653591813 0.026955614169853266 0.025231835814828456 404.4891971710997 -2.606906927254521 0.13853288280762743 LTEHQVAEPPEDWPALIWQQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTEHQVAEPPEDWPALIWQQQR 22 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ; 162.86 1.5754000000000006e-11 273040000.0 157198.0 183504.0 160961.0 177311.0 180109.0 184851.0 169295.0 169529.0 189036.0 181467.0 False True 156351.66343433966 189611.81970948956 183622.90970190757 199758.5544198937 203044.8135603195 172072.68546244907 161105.554080296 182180.11483081913 142450.61075262382 169885.6206982851 0.9203348864470313 1.1161145889223782 1.080861987890192 1.1758414490809825 1.1951854001871338 1.012873748556084 0.9483177765022125 1.072369245154473 0.8385089342294275 1.0 17.37420422086602 2.497618505093246 21.76646939337949 0.9808662989972619 1.102294671708667 0.33194476321811683 0.08823913116800586 180.76468758887228 191958.32914213085 0.028773159580034534 0.026748575726643443 314.4984469000833 -2.497618505093246 0.12142837271140516 LTELMFEHYNIPAFFLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTELMFEHYNIPAFFLCK 18 0 O96019-2;O96019;H7C5S0 O96019-2 ACTL6A Actin-like protein 6A 0 ; 168.32 2.101e-11 357980000.0 780450.0 905670.0 825170.0 734860.0 728510.0 835750.0 836850.0 799960.0 1089950.0 806130.0 False True 776248.1439161468 935814.6784609247 941346.7634937852 827893.2006531067 821281.4302829313 777976.5696438844 796368.3684225513 859657.0773145718 821346.4270817322 754682.0932373853 1.0285763381323239 1.2400117703158011 1.2473421218405463 1.0970092017178588 1.0882482009873224 1.03086660809265 1.0552368680252409 1.1390982839235946 1.0883343257269755 1.0 19.525509517421582 3.5622213817419346 7.007392705901048 1.0770784195937402 1.1786153537714241 0.3280533999046227 0.06608193408471137 0.3031134864319011 21.456808694027504 0.01756314898278364 0.02723395097148249 3649.3992775692104 -3.5622213817419346 0.10153693417768395 LTEVLTDSHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTEVLTDSHVK 11 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 143.97 3.6932e-05 218610000.0 191420.0 217170.0 178810.0 180150.0 211220.0 230500.0 207300.0 186930.0 280100.0 222040.0 False True 190389.41598876144 224398.3721679628 203984.89375561825 202956.97152880428 238117.61500097546 214566.07753863657 197272.10703709736 200879.6658113065 211073.1081477072 207869.21710199228 0.9159096216509331 1.0795170891410073 0.9813136192047707 0.9763685761572971 1.1455164854166051 1.032216701106631 0.9490203012613677 0.9663752459929826 1.01541301348214 1.0 17.66531660289547 -0.19326904652065835 8.283166303413093 0.999999413421695 1.0066486946313846 0.0010439976686638097 0.06329290311799667 0.0 0.0 0.06114305046937687 0.014411555203109237 0.6408124686618257 0.19326904652065835 0.006649281209689661 LTEVQDDKEEEEEENPLLVPLEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTEVQDDKEEEEEENPLLVPLEEK 24 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 ; 162.03 1.6914000000000002e-11 121880000.0 221250.0 154567.0 131494.0 131363.0 130373.0 183333.0 169562.0 175394.0 324347.0 188729.0 False True 220058.81458318597 159711.66915727535 150007.21223366278 147993.54233104817 146975.2287686875 170659.62122946145 161359.6382702571 188482.79091268554 244416.027877131 176684.15364097388 1.2454926491616807 0.9039388415206324 0.8490133899527899 0.8376163865367029 0.8318529179891504 0.9659022482358298 0.9132660453418107 1.0667781293827105 1.3833500222877362 1.0 17.430813128425118 1.537636930634905 4.1053456861695485 1.202044025426908 0.9255523263250839 0.33998066163702767 0.1423547212720894 0.17365242286388233 6.471680313636109 0.08592454303355676 0.03583200210905308 34.485532039849645 -1.537636930634905 -0.27649169910182414 LTEYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTEYSR 6 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ;;; 148.07 0.025152 1652630000.0 1206060.0 1524930.0 1426770.0 1431100.0 1400400.0 1552730.0 1503810.0 1304120.0 1768520.0 1591060.0 False True 1199566.7069658625 1575686.3732103496 1627646.814292843 1612277.1132660096 1578732.639178895 1445393.4298332639 1431064.965187926 1401440.0565871801 1332691.942953883 1489517.1886250037 0.8053392845188991 1.0578504130354414 1.0927344959310936 1.0824159167671825 1.0598955495345759 0.9703771402379914 0.9607576039514953 0.9408686702574215 0.8947140409867385 1.0 20.506413341317774 2.54039494139982 3.9419030367993435 0.9457998596969185 1.0291025737454071 0.14284803838696947 0.08038932384413668 0.39960579888550013 12.2696265854377 0.027795635755066928 0.025287619747024585 347.052311568621 -2.54039494139982 0.08330271404848866 LTFLEEDDKDLYILWK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTFLEEDDKDLYILWK 16 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;; 223.9 7.5646e-15 925881000.0 1932817.0 1515052.0 1378601.0 1234826.0 1289101.0 1792968.0 1723417.0 1789194.0 2601770.0 1774884.0 False True 1922410.9280281588 1565479.5899517266 1572696.0377852977 1391154.8449904367 1453260.3712497533 1669024.342352686 1640048.7356177203 1922712.7416230428 1960598.6454318427 1661609.3835653584 1.1569571928531073 0.942146575143092 0.9464896222544934 0.8372333827372831 0.8746101133176407 1.0044625161970482 0.9870242379701932 1.157138832170909 1.179939560298423 1.0 20.66414983793821 1.8716414072789143 3.613011661419644 1.1268233921388657 0.9516669076619724 0.3493064971754458 0.09182458406997247 0.23910647659548143 5.182912565582265 0.04691107364916188 0.02558540340960484 74.41173097692867 -1.8716414072789143 -0.17515648447689336 LTFSCLGGSDNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTFSCLGGSDNFK 13 0 A0A087WYT3;Q15185-4;Q15185;Q15185-3;Q15185-2 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 ; 255.19 1.8325e-23 627890000.0 577830.0 560630.0 579480.0 491340.0 499340.0 648930.0 678380.0 589370.0 822060.0 672870.0 False True 574719.0274829476 579290.2306420084 661065.747069547 553543.5936217754 562927.9891799416 604070.9965169077 645564.1677367389 633351.7821602193 619474.3280396434 629926.8605270111 0.9123583442721026 0.9196150647669811 1.0494325428772546 0.8787426418976138 0.8936402373903904 0.9589541808258949 1.0248240044830685 1.0054370147517488 0.9834067522083073 1.0 19.264824804508937 2.419635755706013 5.377536673604044 1.0042079900395742 0.9330895946047314 0.3740900655648144 0.04422712361531965 0.22314989864874324 13.341700895121505 0.015976647622067783 0.013374353628894374 262.8062901810813 -2.419635755706013 -0.07111839543484277 LTGIKHELQANCYEEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTGIKHELQANCYEEVK 17 1 G3V1A4;P23528;E9PP50;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 ; 176.81 6.39e-10 3200900000.0 3911100.0 4077100.0 3787500.0 3737600.0 3461100.0 5432000.0 5013000.0 4471300.0 7573200.0 5117300.0 False True 3890043.072164063 4212803.808841003 4320747.078459839 4210779.776775241 3901850.5694530685 5056498.625552592 4770502.038480311 4804971.110801347 5706886.3356808815 4790709.53285905 0.8119972721123258 0.8793694921275768 0.9019012838963039 0.8789470010431394 0.8144619377757352 1.0554801101737683 0.9957819412260047 1.0029769239492559 1.191240315560327 1.0 22.191807912911887 2.7319984131272737 24.927450101438605 1.0409751795159903 0.8622360397133837 0.7238053464592211 0.0590827497133214 285.3419143247659 1083908.9826579764 0.018896003760440535 0.01819879619911327 539.5086511957487 -2.7319984131272737 -0.17873913980260658 LTGIKHELQANCYEEVKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTGIKHELQANCYEEVKDR 19 2 G3V1A4;P23528;E9PP50;E9PK25 G3V1A4;P23528 CFL1 Cofilin-1 0 122.53 1.983e-05 370900000.0 134100.0 132510.0 128010.0 144750.0 123270.0 180130.0 216860.0 167060.0 307860.0 184860.0 False True 133378.02049991055 136920.51524601356 146032.69531713368 163075.33515844803 138967.70382146712 167678.03708041055 206369.65331435067 179526.86551349098 231992.02811264957 173062.07653339137 0.7706946731000075 0.7911641763965285 0.8438168444659653 0.9422938775785666 0.8029933917651454 0.9688895478383908 1.1924602862056424 1.0373553184475528 1.3405133739273491 1.0 17.40093009289439 2.459008965613576 3.4548201339285693 1.1353746681018289 0.8362122032136495 0.6978454910827545 0.09654507630157053 0.13277219349299987 3.37010753127102 0.03356219753473035 0.02868946309845707 287.74578166153896 -2.459008965613576 -0.2991624648881793 LTGMAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTGMAFR 7 0 P04406;E7EUT5;P04406-2;O14556 P04406;P04406-2;O14556 GAPDH;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific 0 ; 119.57 0.011058 4645000000.0 2917800.0 3941900.0 4591700.0 2865600.0 2115000.0 2884700.0 3439700.0 2332100.0 5295300.0 2951200.0 False True 2902090.888998058 4073103.7585711326 5238171.448228133 3228384.666183411 2384332.7134128553 2685287.478853381 3273308.570069965 2506133.1441638516 3990344.268384695 2762851.889350565 1.0503968382033764 1.4742389102618725 1.895929155094671 1.1684971889471332 0.8629969353780002 0.9719259614327656 1.184757164394863 0.9070819734578469 1.4442845393795842 1.0 21.397726793716068 3.494203005012694 24.50229718624579 1.0483916627053242 1.4833633837880604 0.3623275714612647 0.24405100098611365 556.7524486735794 798611.808847029 0.06418806225203208 0.09682414470783289 3120.3478071378895 -3.494203005012694 0.4349717210827362 LTGS(ph)TS(ph)SLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTGSTSSLNK 10 0 Q9NV70;Q9NV70-2 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 2 LT(0.012)GS(0.976)T(0.135)S(0.7)S(0.177)LNK 98.811 0.0074886000000000015 495520000.0 3204600.0 2173200.0 1800200.0 1968200.0 1994000.0 2681800.0 2342700.0 2577800.0 4109300.0 2598200.0 True False 3187346.789664528 2245533.6482728566 2053652.512381099 2217373.9181959075 2247924.080636045 2496413.478278155 2229374.651016922 2770168.5258031725 3096618.0767989024 2432380.6515690694 1.3103815751899064 0.9231834856211003 0.8442973393396868 0.9116064612524909 0.9241662398465322 1.026325166937905 0.9165402008845972 1.1388713045452834 1.2730811991952615 1.0 21.213937588055703 1.652229376449819 5.684790628130013 1.1584296801599834 0.9695778950795748 0.21520145779998112 0.13561777095962183 0.18369057337119793 12.648734938718068 0.0703925416152123 0.03435319545506575 44.89824613572768 -1.652229376449819 -0.18885178508040856 LTGS(ph)TSSLNK ddPTM_BT-474_Trastuzumab_2h_R1 5 LTGSTSSLNK 10 0 Q9NV70;Q9NV70-2 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 1 LT(0.003)GS(0.92)T(0.019)S(0.023)S(0.036)LNK;LTGS(0.941)T(0.055)S(0.004)SLNK;LTGS(0.421)T(0.421)S(0.06)S(0.097)LNK;LTGS(0.594)T(0.136)S(0.019)S(0.25)LNK;LTGS(0.999)T(0.001)SSLNK 245.78 1.5406e-12 3099440000.0 4432744.0 4822470.0 4377852.0 3875906.0 4300992.0 5580260.0 5327520.0 4713560.0 6412650.0 4863490.0 True False 4408878.598828162 4982982.998705327 4994215.508628271 4366595.302194403 4848697.837223166 5194509.760719097 5069807.50449723 5065309.782172697 4832338.332607612 4553097.904356723 0.9683250155041556 1.0944159566472884 1.096882960467302 0.9590383062082057 1.064922814987921 1.140873723745019 1.1134852821078334 1.112497444284221 1.061329765824647 1.0 22.11841705099873 2.998329612668594 24.99720190224475 1.0970913396213176 1.035702923602783 0.1673085979362845 0.055440137247863 99.80787860232265 1493645.6432827788 0.015704205905281647 0.01850859107123932 996.1611782189705 -2.998329612668594 -0.06138841601853451 LTGST(ph)SSLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTGSTSSLNK 10 0 Q9NV70;Q9NV70-2 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 1 LTGS(0.022)T(0.435)S(0.404)S(0.139)LNK 124.39 0.0048845 764130000.0 1694300.0 1597900.0 1416300.0 1375300.0 1320500.0 1702200.0 1832700.0 1641100.0 2339500.0 1779900.0 True False 1685178.0770544275 1651085.135549052 1615702.7292997143 1549412.8389873141 1488657.8477832978 1584530.9205477969 1744045.2994061166 1763567.2153369458 1762961.5726938983 1666305.258150945 1.0113261473617536 0.9908659457638738 0.969631897514755 0.9298493366735557 0.8933884355830589 0.9509247557113929 1.0466541414755168 1.058369831524105 1.0580063671227986 1.0 20.668221288202396 2.2366673427046924 24.981879712814656 1.0470244931980326 0.9555315918963653 0.5862726101731481 0.03400544041044494 35.137798626281445 463634.5549155749 0.013552224209030978 0.010522073364348114 172.45164551119228 -2.2366673427046924 -0.09149290130166732 LTGSTS(ph)SLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTGSTSSLNK 10 0 Q9NV70;Q9NV70-2 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 1 LTGS(0.024)T(0.264)S(0.506)S(0.205)LNK 107.12 0.0024404 270650000.0 1479200.0 1354700.0 1234300.0 1237900.0 1172300.0 1448700.0 1537400.0 1413000.0 1962800.0 1498200.0 True False 1471236.1515545684 1399790.370566556 1408078.7112720758 1394618.0130752537 1321585.4562335184 1348554.7788729828 1463030.0885616667 1518445.2350686146 1479094.2401725056 1402583.5933264466 1.0489472132390352 0.9980085160177398 1.0039178541455747 0.9943207803876407 0.9422507596136723 0.9614790771041846 1.0430965366505263 1.0826058726862646 1.0545497945435125 1.0 20.419655326670615 2.1063048907384543 6.229555118871766 1.0567426620291405 0.9904503103933098 0.3767453328296635 0.03279302443619112 0.18942739049067345 9.817110099003344 0.012835743703482649 0.009427406481129927 127.73352305403422 -2.1063048907384543 -0.06629235163583069 LTGSTSS(ph)LNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTGSTSSLNK 10 0 Q9NV70;Q9NV70-2 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 1 LTGST(0.027)S(0.292)S(0.681)LNK;LTGST(0.021)S(0.07)S(0.909)LNK 167.18 5.583e-06 907220000.0 2999400.0 2750100.0 2355100.0 2400070.0 2399530.0 2922000.0 2890400.0 2817700.0 3880900.0 3054100.0 True False 2983251.563664664 2841635.4160294468 2686677.6091038343 2703918.6159152775 2705095.922371417 2720009.0176481367 2750580.3095997423 3027971.0819906862 2924504.196395703 2859184.723253439 1.043392383640764 0.9938621289204346 0.9396656281958199 0.9456956711906722 0.9461074341826063 0.9513232900017262 0.9620156008912509 1.0590330374125623 1.0228454889993737 1.0 21.44717240045535 1.7515194594652792 24.999999852419027 1.031521943694281 0.9662630653192079 0.4066083148516231 0.03211595186221626 3.5851022706407214 6926.927760661091 0.0155642954158063 0.008631107168028852 56.431222595868014 -1.7515194594652792 -0.06525887837507316 LTGVSISQVNHKPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTGVSISQVNHKPLR 15 1 O75955;A0A140T9R1;O75955-2;A0A140T9W4;A0A140T974 O75955 FLOT1 Flotillin-1 0 108.36 0.00065201 332250000.0 345900.0 447260.0 449120.0 419050.0 434870.0 436980.0 409780.0 335390.0 421230.0 455280.0 False True 344037.7128331028 462146.778725621 512352.19217897864 472101.6870338351 490248.1168235687 406772.6011402753 389957.37588838255 360418.5048759116 317423.5106928188 426223.64061518165 0.8071765149782462 1.0842823688957994 1.2020736143107524 1.1076384368366716 1.1502133389785199 0.9543642406910324 0.9149125921911443 0.8456089023023418 0.744734642674141 1.0 18.701251089266517 2.3920861968819813 2.343421208039649 0.8571012658835142 1.0796369564814787 0.382375363891318 0.11497018843930315 0.2861285600044222 3.2170126943820003 0.04713747708236195 0.036971340870324956 246.65288345833636 -2.3920861968819813 0.22253569059796452 LTHDDTGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTHDDTGAR 9 0 Q5JRX3-3;Q5JRX3;Q5JRX3-2 Q5JRX3-3 PITRM1 Presequence protease, mitochondrial 0 81.95 0.02053 0.0 34446.0 43043.0 36659.0 39044.0 38469.0 38678.0 41251.0 30263.0 51005.0 42249.0 False True 34260.54656331038 44475.66023495702 41820.26855425988 43986.966396728516 43367.799126373124 36004.28089821858 39255.53153587697 32521.378732400237 38435.50118198425 39552.63264881128 0.8662014199537752 1.124467759955637 1.0573321104964866 1.112112227453727 1.0964579655528064 0.9102878490517029 0.9924884617524129 0.8222304447129548 0.9717558252886459 1.0 15.271486104158498 2.7323954366311862 24.79876502335167 0.9241442469181956 1.0590903648080534 0.30230105017800335 0.08304300819247849 461.4517406921149 1856134.5767780019 0.025855327656816873 0.024951452457522887 540.0020849405722 -2.7323954366311862 0.13494611788985778 LTHDVELNLDYER ddPTM_BT-474_Trastuzumab_2h_R1 4 LTHDVELNLDYER 13 0 P02786;G3V0E5;H7C3V5 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form 0 ;;; 234.82 1.1374e-16 1745290000.0 948400.0 1244890.0 1282030.0 1109350.0 1130510.0 1437130.0 1288990.0 890390.0 1344030.0 1238100.0 False True 943293.9197771455 1286325.4110981047 1462528.6803954758 1249793.596255781 1274473.7474422534 1337784.5857401332 1226636.6292800182 956835.4231088063 1012811.8155793017 1159083.3980092613 0.81382747902115 1.1097781344356954 1.2617976263894255 1.0782602860176544 1.0995531034532773 1.1541745728027795 1.0582815968089787 0.8255104203478212 0.8738040915078391 1.0 20.14455294374944 1.8495523017187527 5.424039795957654 0.8863429183226647 1.0959615376211866 0.3504270330031861 0.11319711420771235 0.22171886590101478 8.8040930651294 0.05157657996726397 0.03032740270364859 70.7216365024383 -1.8495523017187527 0.209618619298522 LTHLLGPDWLLDVSHLVAPHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTHLLGPDWLLDVSHLVAPHAR 22 0 Q24JP5-4;Q24JP5;Q24JP5-2 Q24JP5-4 TMEM132A Transmembrane protein 132A 0 ; 212.18 8.363099999999999e-24 139315000.0 42868.0 74606.0 62038.0 65591.0 73949.0 53230.0 64568.0 33614.1 56767.0 46521.0 False True 42637.20345108255 77089.21560972056 70772.41115603736 73894.81387480332 83365.96681993734 49550.33538994197 61444.599166287044 36122.554830941226 42777.533488828565 43551.98995136808 0.9789955292213508 1.7700503626998791 1.6250098155116381 1.6967035021205064 1.9141712448277832 1.137728389570072 1.4108333335606151 0.8294122695949632 0.9822176561070044 1.0 15.410451018634939 2.144368812883409 1.55224009361931 0.9320784665389554 1.5969284371985082 0.4861994682380907 0.26852188314098013 0.306586942003698 1.4214746874257438 0.15578057877886706 0.08563733353511035 139.4340406311561 -2.144368812883409 0.6648499706595528 LTHVNTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LTHVNTGR 8 0 Q99470;K7ELI9 Q99470 SDF2 Stromal cell-derived factor 2 0 ;; 146.69 0.00054923 512400000.0 476730.0 627680.0 555000.0 545560.0 546950.0 513240.0 563490.0 478070.0 626380.0 506540.0 False True 474163.33864968276 648571.9493594267 633139.1758535207 614627.8400624724 616600.8404733633 477760.9268370054 536231.835959161 513746.0109902711 472017.0420619809 474212.18352928734 0.9998969978391506 1.3676830159286089 1.3351389901909132 1.296103013398248 1.3002635990588842 1.007483450301312 1.1307846035677473 1.08336738032911 0.9953709720172744 1.0 18.855173203666443 2.742309334783566 24.973513249795193 1.0586452514797924 1.2720101103172474 0.5244641019633504 0.10219517757474607 258.63132883623217 1722972.9047741748 0.031020556291651832 0.03177561345591591 552.4708073669374 -2.742309334783566 0.21336485883745504 LTIFDEEVDPDEGLFGPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LTIFDEEVDPDEGLFGPGR 19 0 Q53T59;H7BZZ1;H7C0Y9;F8WDN8 Q53T59 HS1BP3 HCLS1-binding protein 3 0 ;; 227.57 2.8807e-19 126926000.0 202895.0 250982.0 208558.0 220648.0 227396.0 239747.0 237719.0 202672.0 252306.0 238347.0 False True 201802.63586375385 259335.78414817722 237921.15358136693 248582.0141764511 256353.53271831173 223173.85419373307 226219.62379523288 217796.4137875631 190128.56702718788 223135.4904008667 0.9043950628437099 1.1622345852839282 1.0662631621439402 1.1140406832183858 1.14886938092084 1.0001719304840186 1.013821796742533 0.9760724902895911 0.852076765939917 1.0 17.767560471448753 2.047371867645832 1.4328674640006216 0.934437549090151 1.0815371963070872 0.3489215458589099 0.07739525737559293 0.4272265314300454 1.6438631834300723 0.049382279035859795 0.024385152296307108 111.52490645759153 -2.047371867645832 0.14709964721693625 LTIHGDLYYEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTIHGDLYYEGK 12 0 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ; 165.58 5.421e-05 1042280000.0 2696400.0 2880300.0 2631900.0 2567900.0 2570100.0 3121900.0 2926100.0 2690500.0 4101500.0 3089000.0 False True 2681882.8819982023 2976169.044321882 3002448.643115104 2892995.8767072833 2897387.000823819 2906090.401162125 2784553.364212499 2891278.772082176 3090740.282284254 2891857.3753740457 0.9273911309859517 1.0291548503276138 1.038242296692365 1.0003936920758723 1.0019121362958152 1.0049217592503983 0.9628944317671726 0.9997999198380955 1.0687734148315264 1.0 21.463564970536247 1.432763474841406 24.99999999996446 1.0343535418078675 0.9971067379495908 0.17617757056261885 0.03348108038586721 105.77141621898618 59617.72691661085 0.018479857901808987 0.008085002764259521 27.087160110720372 -1.432763474841406 -0.03724680385827672 LTISPDYAYGATGHPGIIPPHATLVFDVELLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTISPDYAYGATGHPGIIPPHATLVFDVELLK 32 0 P62942;Q5W0X3;Q1JUQ5;Q5VVH2 P62942 FKBP1A;FKBP12-Exip2;FKBP1C Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase 0 ; 212.21 6.493599999999999e-28 513810000.0 251300.0 264064.0 235922.0 235394.0 253658.0 296778.0 276574.0 248512.0 338295.0 315733.0 False True 249947.0287220548 272853.2106099414 269137.76692921546 265194.8562645097 285959.8427512428 276262.43540026626 263195.0590047186 267057.2273583664 254926.7301707552 295582.649627379 0.8456079172344725 0.9231029323064426 0.9105330345624114 0.8971935822309695 0.9674446152767524 0.9346368460683723 0.8904279711157294 0.9034942602180045 0.8624549867596222 1.0 18.173202061812695 4.741792044995185 23.750034126215773 0.9168250122190752 0.845607863096376 0.2603549509297044 0.037540233613116376 214.74950789232884 1578184.684711601 0.008540540570146587 0.060659888114795515 55181.31490608794 -4.741792044995185 -0.07121714912269916 LTKEDEQQQALQDIASR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTKEDEQQQALQDIASR 17 1 P49916-3;P49916;P49916-4;P49916-2;K7ERZ5;K7EQB6 P49916-3 LIG3 DNA ligase 3 0 130.85 2.6366e-05 342410000.0 113670.0 119200.0 90001.0 109070.0 108480.0 136410.0 133160.0 136770.0 178040.0 147890.0 False True 113058.0133499241 123167.49994207831 102672.35849728422 122878.25081680084 122294.2849886652 126980.2977746003 126718.5420794013 146976.47190398755 134164.42761377268 138451.53358500096 0.816589101055448 0.8896073358874053 0.7415761735441488 0.8875181634688137 0.8833003277178134 0.9171461990100818 0.9152556046019071 1.0615734481102934 0.9690353305577778 1.0 17.079021508518846 2.4445457324031308 0.9370027316244262 1.0175472615046828 0.8282076755481614 0.6898815097175879 0.047687795008216724 0.30000578396983274 0.5262366316721254 0.031707086345417766 0.02177788951145134 278.3208437923654 -2.4445457324031308 -0.18933958595652134 LTKEEIVDKYDLFVGSQATDFGEALVR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTKEEIVDKYDLFVGSQATDFGEALVR 27 2 O43852;O43852-3;O43852-15;O43852-6;O43852-5;H0Y875;O43852-9;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 212.28 3.7953e-26 413070000.0 246710.0 293070.0 344220.0 316650.0 295470.0 355850.0 433440.0 364120.0 587940.0 343340.0 False True 245381.74077205764 302824.6577854442 392683.1839861249 356737.85753314383 333096.3531121024 331250.9270807973 412472.8512984051 391292.48336389585 443050.06499236956 321427.74725183693 0.7634118176480961 0.9421235732588533 1.2216841493726418 1.1098539581078593 1.0363024224262853 1.030561082274157 1.2832521610999401 1.217357514120647 1.3783815142917397 1.0 18.294134949482 5.294315860280043 0.8490221629059959 1.179562803350152 1.7002681938428056e-17 0.522097510324975 0.11910144756722854 4.234367058269131 1.2182649687205778 0.040417124006364075 5.824452035240304 196931.8044496037 -5.294315860280043 -1.179562803350152 LTKEELYTVLAMIAVTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTKEELYTVLAMIAVTQR 18 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 0 69.148 0.022362 0.0 64513.0 76958.0 70915.0 70956.0 70769.0 79635.0 79672.0 57422.0 89505.0 77430.0 False True 64165.66917606812 79519.5005079066 80899.21559577026 79939.0223247174 79781.0126692739 74130.01989062618 75817.96098340387 61707.12122300782 67447.69205555346 72488.35110884187 0.8851859394583665 1.0969969559454786 1.1160305670948343 1.1027843936564135 1.1006045998960858 1.0226473461828278 1.0459330337030643 0.85126948370441 0.930462495336391 1.0 16.145461551949012 1.7590738952751224 24.99999999997435 0.914504415228714 1.0596005458655604 0.3850244525277853 0.07187810550097377 8.293598528636947 10116.48047817569 0.032726250077072416 0.01814879874830399 57.421415652573806 -1.7590738952751224 0.14509613063684645 LTLDDIER ddPTM_BT-474_Trastuzumab_2h_R1 3 LTLDDIER 8 0 Q5HY81;P11441 Q5HY81 UBL4A Ubiquitin-like protein 4A 0 ;; 124.08 0.0030711 209848000.0 343448.0 411105.0 347917.0 343811.0 361187.0 395820.0 370553.0 322399.0 414120.0 395120.0 False True 341598.9141286597 424788.3814067798 396900.6894512242 387337.4373482639 407182.0235269264 368457.89506005676 352627.93574007467 346458.0504889501 312065.6749237 369903.10332074884 0.923482152655675 1.1483774469403114 1.072985562673329 1.0471321648047853 1.1007802310159382 0.996093008553543 0.9532981274674666 0.9366183937865773 0.8436416783805756 1.0 18.49678787851233 2.3563891809994053 2.1227671132006964 0.9242848197581435 1.0637226450015385 0.45169579305787755 0.06463258390076577 0.2591639473665818 2.393141114592809 0.026477115386751477 0.01971457917742344 227.18998402123663 -2.3563891809994053 0.13943782524339499 LTLDKLDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTLDKLDVK 9 1 P00558 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 113.47 0.0020798 0.0 11585300.0 9844300.0 9324700.0 8137100.0 6772800.0 12530800.0 13097400.0 10000200.0 19218800.0 12275000.0 False True 11522926.032047832 10171961.574494986 10637536.70825466 9167256.02568435 7635275.934469307 11664575.290330365 12463828.725073209 10746465.703986663 14482584.258726005 11491598.99084379 1.0027260820038189 0.8851650307846404 0.9256794217001807 0.7977354616175332 0.6644224133258477 1.0150524134739125 1.0846035207984603 0.9351584329168787 1.2602758128146792 1.0 23.45407621899803 2.5037336419514284 24.180859812153983 1.05124797224261 0.8557619657510459 0.44998686158682044 0.11324208952780437 485.6900159074535 441312.9977760367 0.03708329392610753 0.034848563895363165 318.9581046534352 -2.5037336419514284 -0.1954860064915641 LTLEDLEDSWDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LTLEDLEDSWDR 12 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;;;; 312.19 5.8761e-46 1192328000.0 1813478.0 2228490.0 2047065.0 2105084.0 2089232.0 2229781.0 2071410.0 1910223.0 2210030.0 2174435.0 False True 1803714.4359443465 2302663.942499348 2335273.9585920507 2371587.418560872 2355283.311351761 2075641.4878098862 1971207.984745363 2052773.540175852 1665397.719384778 2035660.6966725392 0.8860584865113676 1.1311629419692821 1.1471823189440435 1.1650209793986952 1.1570117334395031 1.019640203891886 0.968338185222847 1.0084065303865644 0.8181116441001256 1.0 20.957065682790134 2.4641246572465905 3.1692111193201282 0.9562949704794965 1.1054543528462255 0.37282076982297707 0.09002443134317596 0.2738989606291646 5.7223000929193315 0.03296431585356127 0.028155505660566352 291.1552712520654 -2.4641246572465905 0.149159382366729 LTLEGLEEDDDDRVS(ph)PTVLHK ddPTM_BT-474_Trastuzumab_2h_R1 4 LTLEGLEEDDDDRVSPTVLHK 21 1 Q9NPB8 Q9NPB8 GPCPD1 Glycerophosphocholine phosphodiesterase GPCPD1 1 LTLEGLEEDDDDRVS(0.97)PT(0.03)VLHK;LTLEGLEEDDDDRVS(0.957)PT(0.043)VLHK;LTLEGLEEDDDDRVS(0.908)PT(0.092)VLHK;LTLEGLEEDDDDRVS(0.928)PT(0.072)VLHK 295.3 4.5241e-55 1170180000.0 619651.0 553177.0 505364.0 469649.0 552084.0 548328.0 503509.0 559577.0 761541.0 581206.0 True False 616314.8678656989 571589.1620424418 576514.8584973669 529106.5152458033 622388.624941761 510423.3759852732 479152.34607883164 601335.4772144307 573869.4246765904 544112.9354845084 1.1326965923294912 1.050497286070707 1.0595499957816772 0.9724203942599847 1.1438592695605585 0.9380835166706042 0.880611937027683 1.1051666630181622 1.0546880753084562 1.0 19.053546601194288 2.729328140222089 24.99359185457977 1.0010825126934975 1.064418795375544 0.2133272026400288 0.07200287720407932 1333.4530725282505 3609836.0444493745 0.02434626514998354 0.02326891767100259 536.2016427920684 -2.729328140222089 0.0633362826820465 LTLEGLEEDDDDRVSPTVLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTLEGLEEDDDDRVSPTVLHK 21 1 Q9NPB8 Q9NPB8 GPCPD1 Glycerophosphocholine phosphodiesterase GPCPD1 0 173.77 2.3259e-12 124430000.0 22218.0 25957.0 24277.0 23277.0 24668.0 24240.0 28555.0 28986.0 33266.0 33283.0 False True 22098.38075665186 26820.963053662144 27694.990580533235 26223.865813355438 27809.323581308916 22564.345854822335 27173.685559306847 31149.08250792561 25068.040041562374 31158.850444990097 0.7092168177277851 0.8607815330354903 0.8888322317740126 0.8416185269624369 0.8925015905322098 0.72417131994837 0.8721016716351931 0.9996865116355389 0.8045239052005193 1.0 14.927354388048368 -4.582255788874476 0.0229754188266135 2.127780814442396 4.3867784770079585e-06 0.32073916675039393 0.07631644331236194 2775.856870622311 5.154275360984729 328.63969347376457 171.8748689012011 2.616641416206318e-05 4.582255788874476 -2.1277764276639193 LTLNS(ph)PIFDKPLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTLNSPIFDKPLSR 14 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 LTLNS(1)PIFDKPLSR;LTLNS(1)PIFDKPLSR 246.48 5.9217e-18 3846900000.0 3477400.0 3731400.0 3497400.0 3136100.0 3312800.0 4396700.0 4313300.0 3945500.0 5607400.0 4840200.0 True False 3458678.0647754595 3855597.3933210685 3989803.5200542454 3533129.9384484203 3734665.4434960373 4092766.4777185335 4104649.2005938822 4239933.244843051 4225531.405310429 4531294.292096293 0.7632870084841448 0.8508821420065767 0.8804997563308695 0.7797176062060414 0.8241939725720806 0.9032223938439264 0.9058447622246505 0.935700259468592 0.9325219535356177 1.0 22.11149176133643 1.9916043482816028 0.5601908238640381 0.993222536603977 0.8108739741430256 0.7561950193969748 0.03458160104138324 0.4175515262614369 0.27367873435965123 0.03371904072103679 0.023063407240399004 98.08539565744333 -1.9916043482816028 -0.18234856246095132 LTLYDIAHTPGVAADLSHIETK ddPTM_BT-474_Trastuzumab_2h_R1 4 LTLYDIAHTPGVAADLSHIETK 22 0 P40926;P40926-2 P40926 MDH2 Malate dehydrogenase, mitochondrial 0 ;;; 264.67 9.6986e-38 8644580000.0 3358250.0 3581120.0 3424180.0 2862300.0 3379060.0 6402940.0 3595080.0 2793290.0 5111470.0 4278850.0 False True 3340169.5551366513 3700315.4143672464 3906274.780493892 3224666.886521771 3809363.2617422426 5960319.8286995115 3421172.245860718 3001739.483839214 3851816.708688896 4005770.129692209 0.8338395482002607 0.9237463195751493 0.9751619923318061 0.8050054751318305 0.9509690118027173 1.4879335647643577 0.8540610507082668 0.7493539036574368 0.9615670854744872 1.0 21.933648204087312 5.6489195979247855 0.9099595445146009 0.9630438244062905 0.33597199097000335 0.0473119013215656 0.1895502684311409 42.86475525745513 8.122269133565402 0.06438753121386609 39.456291638759424 445573.750525451 -5.6489195979247855 -0.6270718334362873 LTPAEEENNSFQRLS(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPAEEENNSFQRLSP 16 1 Q5HYI7-5;Q5HYI7 Q5HYI7-5 MTX3 Metaxin-3 1 LTPAEEENNSFQRLS(1)P;LTPAEEENNS(0.001)FQRLS(0.999)P 221.31 2.8097000000000002e-14 228010000.0 286440.0 390150.0 333490.0 375400.0 379770.0 397720.0 359270.0 330340.0 409120.0 352320.0 True False 284897.8388664757 403135.90689934447 380442.4932529569 422925.6015093709 428131.45842685574 370226.55253217556 341890.7375553205 354991.648232531 308297.85792713304 329834.63596367283 0.8637596171005328 1.2222364268128132 1.1534340295749228 1.2822352639640637 1.2980184969840738 1.1224611128254929 1.0365519574874953 1.0762715904451856 0.9347043163807945 1.0 18.331383378698256 2.318918059050846 3.4706844450139682 1.0231181377379774 1.175921822847743 0.2675030317138829 0.11748461870523182 0.33104451866830487 7.936974489182134 0.04460680903273611 0.035408607287285364 208.40976267788787 -2.318918059050846 0.1528036851097656 LTPEEEEILNK ddPTM_BT-474_Trastuzumab_2h_R1 4 LTPEEEEILNK 11 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ;;; 169.76 3.8406e-05 430570000.0 515101.0 461481.0 432393.0 441171.0 432854.0 570756.0 558861.0 516843.0 746266.0 583335.0 False True 512327.7534491009 476841.116113845 493270.17597267 497023.20336571813 487975.39117333747 531300.9811351068 531826.7583736572 555412.4491355756 562358.7437520771 546106.0608817799 0.9381469830638058 0.8731657644375985 0.9032497738190317 0.9101221154059173 0.8935542491240974 0.9728897355162698 0.9738525104719287 1.0170413568360126 1.0297610373414545 1.0 19.058821642887086 2.4084285315116225 1.3991789295407977 1.0157806606484643 0.9005456644882807 0.8554250020769284 0.01991815049434854 0.13512298040628068 0.532664807796404 0.00997221627397778 0.0069294781474616395 256.1111767026279 -2.4084285315116225 -0.11523499616018362 LTPEELER ddPTM_BT-474_Trastuzumab_2h_R1 6 LTPEELER 8 0 Q5H8X8;O95399;O95399-2 Q5H8X8 UTS2 Urotensin-2 0 ;;;;; 198.92 0.00030729 7061240000.0 2118600.0 3048620.0 2600440.0 2559980.0 2564200.0 2696910.0 2790220.0 2500540.0 3285040.0 2536360.0 False True 2107193.6929985895 3150091.4737702906 2966559.348570329 2884073.2055193344 2890735.670795864 2510478.9595432696 2655246.398924504 2687142.9922848395 2475485.9092807677 2374487.3333129534 0.8874310102377223 1.3266406729469438 1.2493473041320882 1.2146087978896025 1.2174146520978177 1.057271994810171 1.118239866632528 1.131672910857629 1.0425348977654465 1.0 21.179184629493754 2.7401707579161747 24.791590402088318 1.0864278373622154 1.1931624507047978 0.17558851474316062 0.11348944987897612 227.27765582555472 3499445.9540194897 0.03420382265750477 0.03462302978489723 549.7569873675144 -2.7401707579161747 0.10673461334258239 LTPGCEAEAETEAICFFVQQFTDMEHNR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTPGCEAEAETEAICFFVQQFTDMEHNR 28 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 232.81 1.1261999999999999e-36 6132860000.0 2003314.0 2381085.0 1967967.0 1859771.0 1868552.0 2223458.0 2160859.0 1880007.0 2439130.0 2313608.0 False True 1992528.3800131085 2460337.9748287215 2245039.6477241926 2095217.8179133832 2106501.0214245967 2069755.5819171427 2056329.9948870016 2020302.6688221104 1838039.094167498 2165951.556660535 0.9199321073852592 1.1359155135593484 1.0365142474310902 0.9673428805322826 0.9725522322726372 0.9555871993315921 0.9493887287384452 0.9327552421980361 0.8486058187752765 1.0 21.046569545535803 3.352309407322574 1.3641320374536803 0.9337758154381685 1.0398445242501564 0.2847281074251611 0.06104219472893279 0.4742821308875477 1.8283090519014797 0.020302219542505547 0.03406707461344392 2250.6574857591277 -3.352309407322574 0.10606870881198793 LTPHEK ddPTM_BT-474_Trastuzumab_2h_R1 6 LTPHEK 6 0 O00148;O00148-2;O00148-3;K7EQN7 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 ;;;;; 114.19 0.0255 2664780000.0 6923980.0 6991990.0 6319300.0 6058680.0 6937430.0 6237370.0 7133230.0 6808770.0 9245170.0 7287410.0 False True 6886702.061006492 7224714.160402789 7209002.511659738 6825708.266789542 7820870.589130856 5806195.293089647 6788168.41331516 7316874.991633506 6966821.732431054 6822321.254734416 1.0094367890147944 1.0589818172794383 1.056678840307759 1.0004964603583826 1.1463650416203264 0.8510586171913821 0.9949939558481573 1.0724905378145144 1.0211805443193342 1.0 22.701831260613787 LTPIHDR ddPTM_BT-474_Trastuzumab_2h_R1 7 LTPIHDR 7 0 P28072;A0A087X2I4;I3L3X7 P28072 PSMB6 Proteasome subunit beta type-6;Proteasome subunit beta type 0 ;;;;;; 145.34 0.0022931 4882300000.0 4788940.0 5405000.0 5091880.0 5223250.0 4961400.0 5270180.0 5286680.0 4884610.0 5614590.0 5269710.0 False True 4763156.879141252 5584902.157608499 5808772.44458563 5884512.914448118 5593204.881478278 4905864.861269294 5030943.091321188 5249124.4017469995 4230949.526151497 4933392.596174283 0.965493174582326 1.1320611625232186 1.177439729627474 1.1927923431456486 1.1337441268744073 0.9944201207651028 1.0197735114822513 1.0639989215165155 0.8576146016500872 1.0 22.234148669958095 2.7385144109646835 24.333084550249698 0.9998377194014013 1.128160274004808 0.42740783218061174 0.07608129829990468 3.001583863115456 1580151.2929484404 0.024382096794235017 0.02438159109911954 547.6642735150583 -2.7385144109646835 0.1283225546034067 LTPLEACAHSFFDELRDPNVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTPLEACAHSFFDELRDPNVK 21 1 A0A3B3ITW1;P49841;P49841-2 A0A3B3ITW1 GSK3B Glycogen synthase kinase-3 beta 0 205.02 2.9939e-22 343550000.0 246190.0 247120.0 232370.0 217600.0 219900.0 265730.0 268680.0 264390.0 335820.0 286600.0 False True 244864.5403942804 255345.23981280552 265085.6762037526 245148.1376889691 247902.96155058488 247360.71056113587 255682.92194272694 284120.12434521696 253061.6607574545 268308.94262939546 0.9126216144517483 0.951683672226698 0.9879867350150343 0.9136785948561638 0.9239459524575125 0.9219249576142732 0.9529422293460105 1.0589290150409219 0.9431726660970766 1.0 18.033535614283394 1.9577339848375162 12.527850399391905 1.0069416374883475 0.9369852526590837 0.4302724575897924 0.033418828223800295 1.474995950093256 435.85525031480756 0.013569572332825762 0.008728531355748392 90.72646398992809 -1.9577339848375162 -0.0699563848292638 LTPLSHEVISR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTPLSHEVISR 11 0 P41091;Q2VIR3;Q2VIR3-2;H7BZU1 P41091 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein 0 ;;; 250.7 8.9128e-17 3832520000.0 1762760.0 2268770.0 2130370.0 2314940.0 2240680.0 2291260.0 2122570.0 2021470.0 2609810.0 2233410.0 False True 1753269.4960210458 2344284.637949571 2430307.5784920114 2608011.1666438575 2526017.3164491355 2132870.5892458824 2019893.1800951846 2172322.3562166695 1966657.2951623236 2090871.861681498 0.8385351241041863 1.1211995727295676 1.1623417116233685 1.2473318974920211 1.2081167491620888 1.0200867056150484 0.9660530695892423 1.0389552779526472 0.9405919756272009 1.0 20.995673218922057 2.5669246495435547 6.905758154702176 0.9939296869072135 1.1254261559298875 0.25286469908918374 0.1054019185007085 0.3696190590511171 24.354401484281397 0.035636815129446706 0.03346772863635884 368.9135862009437 -2.5669246495435547 0.13149646902267398 LTPPES(ph)QSPLHWLADLAEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPPESQSPLHWLADLAEQK 20 0 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 LTPPES(0.6)QS(0.4)PLHWLADLAEQK;LT(0.001)PPES(0.595)QS(0.404)PLHWLADLAEQK 192.57 6.7623000000000006e-18 43822000.0 109052.0 100236.0 82823.0 82761.0 79592.0 101158.0 96917.0 103420.0 126945.0 105174.0 True False 108464.87614881618 103572.29466605853 94483.75848957863 93238.53411432344 89727.56942125592 94165.18556031841 92228.75445110638 111137.72555611905 95661.10572585033 98461.7052760085 1.1015945320545355 1.0519043355558793 0.9595990463979994 0.9469522577631229 0.9112940830115729 0.9563635455668164 0.9366967004336368 1.1287406128563084 0.9715564590080222 1.0 16.587275105633875 -0.07315844267125385 7.281713438701924 0.9999999994811555 0.9985309602954124 0.0 0.06967129261166391 0.0 0.0 0.07259793039694339 0.017111496308761506 0.8449705202416824 0.07315844267125385 -0.0014690391857430374 LTPPESQS(ph)PLHWLADLAEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPPESQSPLHWLADLAEQK 20 0 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 LTPPES(0.165)QS(0.834)PLHWLADLAEQK;LTPPES(0.396)QS(0.604)PLHWLADLAEQK 309.68 1.9935999999999996e-66 351800000.0 473270.0 418070.0 397470.0 369120.0 405980.0 491190.0 460490.0 466490.0 574060.0 481130.0 True False 470721.96690523997 431985.207221348 453430.3211288267 415850.55415327364 457679.1465680151 457235.19143688853 438214.3394573705 501301.8525882232 432590.6050098988 450423.87148388365 1.0450644308759347 0.9590637498812152 1.0066747120551993 0.9232427064384685 1.016107661124242 1.0151220225752369 0.9728932394584464 1.1129557830421515 0.9604078122786106 1.0 18.7809237635752 LTPPS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPPSPVR 8 0 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 LT(0.002)PPS(0.998)PVR;LT(0.102)PPS(0.898)PVR 88.39200000000002 0.015365 189392000.0 329670.0 367660.0 335420.0 334840.0 300560.0 345910.0 322770.0 317450.0 404920.0 380090.0 True False 327895.09334978054 379897.3408448369 382644.2204770956 377230.7096680815 338834.53444130905 321998.05588455446 307156.3819988612 341139.7309784375 305132.8916500164 355832.3307885796 0.9214876361097211 1.0676301953870395 1.07534978518983 1.060136128811229 0.9522308827036576 0.904915118789113 0.8632053791125586 0.9587092050416527 0.8575187391595211 1.0 18.440838073713284 3.087172164903791 4.190102553224137 0.9146053629569417 1.0364792236109595 0.477769749466591 0.05625297964124445 0.17416377960195403 5.737565543249391 0.016196115221440946 0.019525459729677973 1222.2841073069687 -3.087172164903791 0.12187386065401773 LTPPVLEEMGHCDSVYLSEVGDTQVVVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTPPVLEEMGHCDSVYLSEVGDTQVVVFK 29 0 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 82.34200000000001 0.0025889 12228000.0 6155.0 6256.5 5430.7 4472.6 5711.3 6124.9 7897.7 5311.8 9535.7 6147.8 False True 6121.862163884785 6464.743820365879 6195.2953555094 5038.830701413994 6438.600201472738 5701.500079463749 7515.658078856162 5708.193488773867 7185.754506833589 5755.442140603613 1.0636649651459695 1.1232401720726668 1.0764238792016867 0.8754897674786697 1.118697754956056 0.9906276425299609 1.305835050592298 0.9917906130101778 1.2485147676386805 1.0 12.49071104699951 LTPRPS(ph)PSPMIESTPMSIAGDAT(ph)PLLDEMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 2 LT(0.002)PRPS(0.957)PS(0.029)PMIES(0.007)T(0.007)PMS(0.037)IAGDAT(0.961)PLLDEMDR 86.486 0.0015334 19205000.0 20258.0 24723.0 22892.0 21437.0 30161.0 29086.0 25878.0 24475.0 29084.0 26272.0 True False 20148.933178875388 25545.890109630895 26114.994619169032 24150.92200201486 34001.824571747136 27075.353281079297 24626.182276439966 26301.448781531766 21916.63790563338 24595.29846740919 0.8192188928129657 1.038649323303855 1.0617880752198867 0.9819324629874623 1.382452203895894 1.1008345077396147 1.0012556793759466 1.0693689615673243 0.8910905445882165 1.0 14.586094942024328 4.780670463981804 2.687965108121661 1.0703086309427898 0.7536143439795684 0.2571622586406541 0.1217112566605697 0.7662122808755363 6.69246515640838 0.03037184604667055 0.5660172680142965 60349.05362019003 -4.780670463981804 -0.31669428696322144 LTPRPS(ph)PSPMIESTPMSIAGDATPLLDEMDR ddPTM_BT-474_Trastuzumab_2h_R1 11 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 LT(0.003)PRPS(0.964)PS(0.027)PMIES(0.003)T(0.003)PMS(0.001)IAGDATPLLDEMDR;LT(0.009)PRPS(0.968)PS(0.023)PMIESTPMSIAGDATPLLDEMDR;LT(0.011)PRPS(0.926)PS(0.063)PMIESTPMSIAGDATPLLDEMDR;LT(0.043)PRPS(0.907)PS(0.048)PMIES(0.001)T(0.001)PMSIAGDATPLLDEMDR;LT(0.002)PRPS(0.833)PS(0.122)PMIES(0.018)T(0.018)PMS(0.005)IAGDATPLLDEMDR;LT(0.005)PRPS(0.943)PS(0.033)PMIES(0.006)T(0.006)PMS(0.008)IAGDATPLLDEMDR;LT(0.016)PRPS(0.959)PS(0.025)PMIESTPMSIAGDATPLLDEMDR;LT(0.043)PRPS(0.697)PS(0.227)PMIES(0.011)T(0.011)PMS(0.011)IAGDATPLLDEMDR;LT(0.007)PRPS(0.897)PS(0.08)PMIES(0.008)T(0.008)PMS(0.001)IAGDATPLLDEMDR;LT(0.007)PRPS(0.983)PS(0.009)PMIES(0.001)T(0.001)PMSIAGDATPLLDEMDR;LT(0.003)PRPS(0.679)PS(0.09)PMIES(0.101)T(0.101)PMS(0.025)IAGDAT(0.001)PLLDEMDR 218.89 4.3020999999999994e-35 1175780000.0 222818.3 275419.0 255376.0 263626.7 259331.0 279831.0 282797.0 247677.0 300755.0 289150.0 True False 221618.67103024022 284586.15492069884 291330.72103201575 297001.8131897451 292355.26567473705 260486.9416213195 269117.0287205499 266159.9154183226 226637.96016052703 270696.19944623066 0.8186988642013097 1.051311970773447 1.076227599899805 1.0971776249438612 1.08001245038835 0.9622851822604216 0.9941662619242113 0.9832421584152713 0.8372410127078453 1.0 18.046315106804737 1.7801286733501367 1.5286991758496173 0.9259580081699416 1.026036842752414 0.136337531606056 0.08537450568417096 0.6857747496826684 3.0746256039618585 0.06494658838402317 0.026248507964069596 60.27381396844236 -1.7801286733501367 0.10007883458247246 LTPRPSPS(ph)PMIESTPMSIAGDATPLLDEMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 LT(0.017)PRPS(0.211)PS(0.298)PMIES(0.23)T(0.23)PMS(0.014)IAGDATPLLDEMDR 47.919 0.055678 52908000.0 8364.2 13763.0 8375.9 11176.0 10817.0 13287.0 12107.0 10327.0 11977.0 9873.1 True False 8319.168076549982 14221.093135090805 9555.153915372086 12590.88045409891 12194.480832617905 12368.500964233677 11521.33815676863 11097.653179443454 9025.4288335776 9242.990305213825 0.9000515852383044 1.538581418512244 1.0337730106654093 1.3622085535453383 1.3193220408052564 1.338149295391644 1.2464946706986835 1.2006561527153656 0.9764620036966282 1.0 13.17414395454756 1.3292231164985209 3.109352124483606 0.9813217940978998 1.2602233572060961 0.2696576114387219 0.1673126590192604 0.2914238234888999 4.619406379940538 0.1268261342556278 0.03908575973507417 21.341410352550497 -1.3292231164985209 0.27890156310819636 LTPS(ph)PDIIVLSDNEAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 LT(0.005)PS(0.995)PDIIVLS(0.004)DNEAS(0.535)S(0.461)PR 84.493 0.0046604 23204000.0 26460.0 29147.0 27365.0 27824.0 25780.0 26618.0 26782.0 25723.0 33884.0 29203.0 True False 26317.542299982368 30117.140275266414 31217.75413915607 31346.515547141 29062.93018996853 24777.96031203221 25486.452342824614 27642.580878747358 25533.74222233809 27339.239538053833 0.9626289079237427 1.1016085591315 1.1418662211033224 1.1465759866330367 1.0630482296157313 0.9063149059996147 0.9322297464547139 1.0110954564142614 0.9339594902337115 1.0 14.73868549338088 2.891091530377628 5.490005334755959 0.9604079220105392 1.0942909360268809 0.5638834675002191 0.055718993498139885 0.17200828246776725 7.313975233595345 0.017658857211832246 0.018857259919487574 778.2005445677531 -2.891091530377628 0.13388301401634173 LTPS(ph)PDIIVLSDNEASSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LT(0.002)PS(0.998)PDIIVLSDNEASSPR;LTPS(1)PDIIVLSDNEASSPR;LTPS(1)PDIIVLSDNEASSPR;LTPS(1)PDIIVLSDNEASSPR 319.99 6.983699999999998e-62 267892000.0 61138.1 86113.7 71734.0 82122.1 72621.3 82406.0 79734.0 74668.4 71492.1 84981.3 True False 60808.939262681466 88979.94244766918 81833.52367689453 92518.74943983144 81869.19209483168 76709.46718285848 75876.96180654081 80240.53516645245 53873.829900059514 79557.7206778487 0.7643373734764692 1.118432525335582 1.0286056837684074 1.162913525570517 1.0290540176024243 0.9641989052637193 0.9537347369941341 1.0085826301053629 0.6771665834697503 1.0 16.279714323218975 1.3485711853022817 14.544452272683637 0.838608267913849 1.0106531328821737 0.21970194783277874 0.12395196416858188 0.8686091956159198 108.49606001454224 0.07768023672141687 0.02839312818253613 22.313679215067136 -1.3485711853022817 0.17204486496832472 LTPSGYEWGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LTPSGYEWGR 10 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;; 177.3 5.4446e-06 891850000.0 408927.0 538359.0 494334.0 463185.0 438973.0 466500.0 468015.0 407207.0 512630.0 465300.0 False True 406725.3824680612 556277.9538701124 563931.9303718455 521824.1735085725 494873.60955318244 434251.95302287996 445375.32645907946 437594.85409524816 386299.20539007115 435604.155636628 0.9337040916738708 1.277026278725743 1.2945972233613536 1.1979320370484883 1.136062645752158 0.9968957995550529 1.022431307635647 1.0045699712292937 0.8868124887961675 1.0 18.732658191778494 2.8175248394519166 2.509911833285601 0.983895544359415 1.1911701510448864 0.47376905086184173 0.09805402214773191 0.25178609336868407 3.11381150149647 0.03315954754311955 0.03469602287393282 656.9386889783641 -2.8175248394519166 0.20727460668547149 LTPSPDIIVLSDNEAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LTPSPDIIVLSDNEAS(0.5)S(0.5)PR;LTPSPDIIVLSDNEAS(0.5)S(0.5)PR 189.56 1.4408000000000005e-14 268880000.0 364710.0 459870.0 394040.0 436930.0 443310.0 486150.0 496330.0 438310.0 484220.0 482670.0 True False 362746.44188309053 475176.49495271454 449517.40694292204 492245.2932005573 499762.9007957703 452543.59477400524 472320.6217352746 471018.9178930826 364890.4692155752 451865.5873654234 0.8027750995557397 1.0515881453226037 0.9948033652303724 1.0893622062936137 1.1059990288475152 1.001500462587857 1.045267962291869 1.0423872298825223 0.8075199338437086 1.0 18.7855341645998 4.743189084702668 24.5325113848396 1.0229652986015134 0.8027749825723698 0.3962514142607899 0.07822722342080372 357.24237863895655 1893423.9940465065 0.018089821015138 0.1451767047493731 55359.10812419586 -4.743189084702668 -0.22019031602914363 LTPVRPAAAS(ph)PIVSGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTPVRPAAASPIVSGAR 17 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR 203.53 5.8168e-12 3431100000.0 1353810.0 1712180.0 1544020.0 1596210.0 1714950.0 1411370.0 1436700.0 1571090.0 1902980.0 1740900.0 True False 1346521.2373824313 1769168.876265334 1761404.5951375742 1798290.0223368993 1933338.717194978 1313805.3139076165 1367201.3322730225 1688332.7136333692 1434016.0776255736 1629794.271540524 0.8261909253795967 1.0855166858532823 1.0807527219203248 1.1033846748259268 1.186247093240508 0.806117273111884 0.8388797016575033 1.0359176879653118 0.879875517214884 1.0 20.63625843429576 2.73564908828717 24.998299533870846 0.9183602436217124 1.0619961305465555 0.31090846067078615 0.10702428320123959 337.1581154906083 2894818.117987652 0.034665899569676806 0.03400308073214743 544.0628701749635 -2.73564908828717 0.14363588692484308 LTPVS(ph)PESSSTEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 LTPVSPESSSTEEK 14 0 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 1 LTPVS(0.991)PES(0.007)S(0.001)STEEK;LTPVS(1)PESSSTEEK;LTPVS(1)PESSSTEEK;LTPVS(1)PESSSTEEK;LTPVS(1)PESSSTEEK 309.98 1.1272999999999996e-55 5520590000.0 5107020.0 4517570.0 3948200.0 3931870.0 3849440.0 4616360.0 4480930.0 4599000.0 6807340.0 4697220.0 True False 5079524.3717632685 4667934.586521271 4504072.241630397 4429644.33885629 4339643.366581553 4297241.898942562 4264170.2970851 4942200.733248812 5129762.270682658 4397439.398107639 1.1551095789857055 1.061511976385629 1.0242488489025332 1.0073235667016833 0.9868568895910294 0.9772145810108958 0.9696939311818854 1.123881487798468 1.166533931744497 1.0 22.068232265122145 -0.6066675415058542 6.4031108257980875 0.9999999999325909 1.0482923571048022 0.045634563517742865 0.06967070792778753 0.0 0.0 0.07146446279397176 0.01684433541849039 0.24736170088001003 0.6066675415058542 0.04829235717221125 LTPVSLSNS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPVSLSNSPIK 12 0 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 LTPVSLS(0.001)NS(0.999)PIK;LTPVSLS(0.013)NS(0.987)PIK 162.37 6.5937e-05 537590000.0 985380.0 764470.0 684360.0 615000.0 583610.0 974070.0 944670.0 846240.0 1167930.0 932060.0 True False 980074.8235660102 789914.9218181263 780711.9394362452 692858.9369426299 657929.2741725188 906734.8336141409 898972.703110153 909390.7259196508 880109.3009601968 872575.1328232875 1.1231982057463623 0.9052686606622545 0.8947217380699225 0.7940392877124847 0.75400873738372 1.0391481484010745 1.0302524897786784 1.042191888940547 1.0086344062001078 1.0 19.73491983393655 2.688162897072489 24.98225364969383 1.0284189165491886 0.8893187499279906 0.3331373411528622 0.09158461584820131 418.72782015716155 207563.6999756232 0.03097486534017869 0.02920341097864814 487.71138871940826 -2.688162897072489 -0.13910016662119795 LTPVSLSNS(ph)PIKGADCQEVPQDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPVSLSNSPIKGADCQEVPQDK 23 1 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 LTPVS(0.085)LS(0.056)NS(0.859)PIKGADCQEVPQDK;LTPVSLS(0.007)NS(0.993)PIKGADCQEVPQDK 187.75 1.4141e-17 1095340000.0 886170.0 592830.0 536470.0 567290.0 463610.0 918660.0 852450.0 842910.0 1328900.0 927120.0 True False 881398.9591827433 612561.9881766974 612000.3129191688 639108.855834446 522647.98546824267 855155.1964930324 811213.7368247639 905812.2244102529 1001410.4013476896 867950.4078526335 1.0154946079965357 0.7057568988212312 0.7051097705378098 0.7363425952130646 0.6021634194070007 0.98525813082886 0.9346314368717911 1.0436220966256493 1.1537645380284398 1.0 19.72725308808697 2.6049679100562253 5.934426400044754 1.0250192946789005 0.7474156224326909 0.5999155748263238 0.11076275576044566 0.1636755505949863 7.235745897579402 0.036351748235303974 0.03413770757935748 402.68727873312815 -2.6049679100562253 -0.27760367224620963 LTPVSLSNS(ph)PIKGADCQEVPQDKDGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPVSLSNSPIKGADCQEVPQDKDGYK 27 2 P46100;P46100-4;P46100-2;P46100-5;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 LTPVS(0.002)LS(0.043)NS(0.955)PIKGADCQEVPQDKDGYK;LTPVS(0.002)LS(0.07)NS(0.928)PIKGADCQEVPQDKDGYK 218.4 1.6890000000000002e-34 1544830000.0 981870.0 696820.0 617490.0 541550.0 549440.0 1139660.0 991350.0 852970.0 1889540.0 1113000.0 True False 976583.7210160114 720013.2324634152 704427.2246807042 610110.1744736269 619407.9272139763 1060877.9866710748 943394.6131752358 916622.9526938967 1423888.185538802 1041967.3871127589 0.9372497960056865 0.6910132134351508 0.6760549642850511 0.5855367279432925 0.5944599945016759 1.0181489361300609 0.9053974479847555 0.8797040713853957 1.3665381499936644 1.0 19.99087869225057 2.7292622251740326 24.387693654162412 1.0037068103623092 0.6891971657898645 0.5394896549038682 0.15438169212345573 407.9883300502766 1070063.9007967417 0.05046850756105942 0.048203205499261687 536.120266959514 -2.7292622251740326 -0.3145096445724448 LTPYEVDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTPYEVDELR 10 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ; 187.22 2.9185e-06 303520000.0 224380.0 274780.0 244650.0 237730.0 223314.0 228180.0 244980.0 216040.0 263910.0 225030.0 False True 223171.96301096163 283925.88619198237 279094.5934640795 267826.59362499387 251751.71421422134 212406.45367794414 233129.38148551877 232162.00182889152 198872.91671282166 210668.39274212442 1.0593519042229682 1.3477384172172957 1.3248052535612898 1.2713183507923556 1.1950141686531321 1.0082502216549745 1.106617743891408 1.1020257894741574 0.9440092750707915 1.0 17.684614352641617 2.9094000269226963 3.6534859140367257 1.0502211776169859 1.2613730977438997 0.5911989131561441 0.0862193055809918 0.17518263526628186 4.357617595950318 0.026925131069785994 0.02932845446320341 811.7083749864861 -2.9094000269226963 0.21115192012691386 LTPYEVDELRR ddPTM_BT-474_Trastuzumab_2h_R1 8 LTPYEVDELRR 11 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;;;;; 231.54 1.5935e-12 14289660000.0 4268230.0 5435760.0 5167070.0 5156360.0 4905950.0 5200040.0 5075440.0 4560220.0 5796170.0 4936160.0 False True 4245250.323924935 5616685.985613692 5894548.543022439 5809154.647306503 5530693.652656171 4840573.474377484 4829921.577136344 4900526.77272796 4367781.568198837 4621130.04274081 0.918660648945309 1.2154356042061119 1.2755643075403176 1.2570853002572226 1.1968270967280321 1.047486963060343 1.045181921405462 1.0604606941165928 0.9451760776695843 1.0 22.139814258131253 2.6854890418723647 4.608966170082331 1.0263994964821013 1.1857417189315542 0.37936099105514065 0.09720221637874331 0.23549019619411396 10.860200432243008 0.03258819810923089 0.03114079071399127 484.7178820581218 -2.6854890418723647 0.15934222244945295 LTQAEISEQPTMATVVPQVPTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTQAEISEQPTMATVVPQVPTSPK 24 0 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 LTQAEISEQPTMATVVPQVPT(0.416)S(0.584)PK 103.68 0.002053 140350000.0 146640.0 115810.0 114550.0 97194.0 117080.0 145080.0 139730.0 130460.0 176300.0 116400.0 True False 145850.50653323578 119664.66584137654 130677.64431355115 109498.75043447458 131989.44401247136 135050.9610815851 132970.72607956387 140195.5876624568 132853.2272989672 108971.25234494626 1.3384310393308962 1.0981305919342883 1.1991937460706954 1.0048407087023148 1.211231780604498 1.239326502865949 1.2202367433444536 1.2865373632549486 1.2191584885013804 1.0 16.73358806292953 3.0338246017699553 24.9990852760887 1.2196519462857407 1.1521990958427888 0.0 0.10706868892740733 474.4919128486408 350684.5535951892 0.029256484307499157 0.03496793410390269 1080.997281455852 -3.0338246017699553 -0.0674528504429519 LTQDQDVDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTQDQDVDVK 10 0 P30153;B3KQV6;E9PH38 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ; 185.29 3.4082e-06 272850000.0 428550.0 386230.0 333220.0 333980.0 345990.0 435400.0 435100.0 418040.0 581240.0 447250.0 False True 426242.734416381 399085.4320690347 380134.47959983896 376261.83375625865 390049.77565660205 405301.8228213547 414052.55075658957 449236.26756410795 438001.19021697 418706.1220900105 1.01799976625312 0.9531397106805192 0.9078789622238204 0.8986298835997735 0.931559762512266 0.9679863786042894 0.9888858292537205 1.0729154503920397 1.0460826033081303 1.0 18.675578486960518 2.102792459347569 2.308804087345521 1.0460867998727728 0.9399730088329046 0.575234047473071 0.035659011638456826 0.2016619139576691 2.1013267005586993 0.018590463722411917 0.011163149362379925 126.70462250917056 -2.102792459347569 -0.10611379103986818 LTQEPESIRK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTQEPESIRK 10 1 P09497-2;P09497;H0Y9Q6 P09497-2 CLTB Clathrin light chain B 0 ;; 130.1 0.00045799 1733250000.0 1745930.0 1945350.0 1741840.0 1746360.0 1847570.0 2050060.0 2130880.0 1910660.0 2610510.0 2114540.0 False True 1736530.1068710573 2010099.798761091 1987075.9316553117 1967448.9969416764 2082847.088094652 1908344.1775221587 2027801.1936478985 2053243.151334891 1967184.7895418461 1979588.2468512263 0.8772178303408387 1.0154130799464975 1.0037824455747277 0.9938677904716504 1.0521617772825593 0.9640106625999675 1.024355037909202 1.0372071841711639 0.9937343246358886 1.0 20.916768951143755 4.739529825663143 24.916030221120582 1.011675593249355 0.8772177860667081 0.7376514235107494 0.023612082666137707 36.52636144647934 938861.1373453634 0.005427459276582182 0.03274686573220928 54894.625381537764 -4.739529825663143 -0.134457807182647 LTQT(ph)SSTEQLNVLETETEVLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 LT(0.036)QT(0.468)S(0.242)S(0.127)T(0.127)EQLNVLETETEVLNK 217.42 4.647199999999999e-25 88876000.0 87718.0 75106.0 66409.0 67264.0 71406.0 88672.0 86447.0 85325.0 105130.0 81944.0 True False 87245.73603438598 77605.85780746426 75758.80996262436 75779.61550326666 80499.13084347907 82542.31335143595 82265.22835039055 91692.38477157097 79222.1201698266 76714.26376421201 1.1372818007162706 1.0116222720456869 0.9875452913877357 0.987816499630133 1.0493372013697502 1.07597087296747 1.0723589631680481 1.1952455811007392 1.0326908749762977 1.0 16.22720722779498 2.6330966809261893 2.1523490382663493 1.1006598950857478 1.0267704350529492 0.03738910225522485 0.06334191918269406 0.5091037398044898 4.6635099214356135 0.02397811445208011 0.022121790211498325 429.6320591158448 -2.6330966809261893 -0.07388946003279862 LTQTSS(ph)TEQLNVLETETEVLNK ddPTM_BT-474_Trastuzumab_2h_R1 4 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 LTQT(0.006)S(0.006)S(0.494)T(0.494)EQLNVLETETEVLNK;LT(0.016)QT(0.126)S(0.115)S(0.483)T(0.259)EQLNVLETETEVLNK;LT(0.017)QT(0.069)S(0.069)S(0.422)T(0.422)EQLNVLETETEVLNK;LT(0.076)QT(0.155)S(0.072)S(0.349)T(0.349)EQLNVLETETEVLNK 311.67 2.0951999999999995e-67 1131120000.0 599515.0 544285.0 509952.0 465410.0 480271.0 605997.0 592415.0 597117.0 764760.0 602266.0 True False 596287.2778523788 562401.1971977692 581748.8090177567 524330.8582804371 541430.6650607598 564105.8537534967 563757.6232049298 641676.9026386882 576295.1452589803 563828.8682541362 1.0575678391543666 0.9974679000371377 1.031782588250773 0.9299468115281105 0.9602748201546842 1.0004912581014487 0.9998736406501727 1.1380703237590584 1.022110036762476 1.0 19.1048978207752 1.9491554475401212 20.817403348435306 1.0687944540579926 0.993851253354116 0.2106190531019826 0.04741115024478808 62.236945897813484 25480.90494502552 0.019380536266272414 0.012504184982762264 88.95194476376702 -1.9491554475401212 -0.07494320070387661 LTQTSST(ph)EQLNVLETETEVLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 LT(0.004)QT(0.018)S(0.024)S(0.311)T(0.643)EQLNVLETETEVLNK 232.2 2.0677999999999999e-26 98839000.0 83496.0 77406.0 71780.0 68805.0 60567.0 88315.0 91234.0 77472.0 117950.0 87794.0 True False 83046.4668132777 79982.4119170848 81886.0000770555 77515.70594526439 68279.84844126551 82209.99192114823 86820.66287227471 83253.35403484482 88882.8029490254 82190.91175577501 1.0104093632644557 0.9731296345117495 0.9962902020161848 0.9431177278528957 0.8307469400528694 1.0002321444666524 1.0563292341890147 1.012926517742336 1.0814188704115475 1.0 16.326691256549456 2.4832044301967793 24.785947030332345 1.0355666502469505 0.9502299141575997 0.4039698122176606 0.049905261141134964 263.5669976660337 1073911.5965075549 0.01762533320825209 0.015217787544649608 304.23167617071294 -2.4832044301967793 -0.08533673608935077 LTQYHGGS(ph)LPNVSQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTQYHGGSLPNVSQLR 16 0 Q6UUV7;Q6UUV7-3;H0YK33 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR 244.22 3.1093e-20 2537600000.0 2326910.0 2196310.0 2077690.0 2196640.0 2117440.0 2192270.0 2217500.0 2081830.0 2650920.0 2486340.0 True False 2314382.175104007 2269412.85065257 2370210.6923947795 2474734.3987734285 2387083.432949846 2040723.5349484894 2110231.0533273686 2237186.72591854 1997636.2865081043 2327659.6525372323 0.9942957822812488 0.9749762376895732 1.0182806106602247 1.0631856749657878 1.0255294112040134 0.8767276318614827 0.9065891789751742 0.9611313765223048 0.8582166573754068 1.0 21.150448693939378 2.7517687195461282 24.70031839678672 0.9205948190617791 1.0158469879835939 0.5488548247931342 0.04293648440591904 510.10548931637567 953941.4214383415 0.013110224680055155 0.013828166611706622 564.6362017174774 -2.7517687195461282 0.09525216892181476 LTRDETNYGIPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTRDETNYGIPQR 13 1 P63244;D6RHH4;D6R9L0;D6RAC2;D6R9Z1;D6RFX4;D6REE5;E9PD14;D6RFZ9;D6RAU2;D6RBD0;D6R909;D6RGK8 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 106.29 0.0012635 332390000.0 690690.0 459710.0 406560.0 412870.0 341290.0 596740.0 611890.0 585640.0 1007700.0 606980.0 False True 686971.4017828729 475011.1694494365 463800.1141171311 465139.29966748477 384751.25851568545 555488.7683748628 582290.543053205 629343.4306196631 759365.8374881981 568242.016738277 1.2089415804310026 0.8359310917837651 0.8162017247146823 0.8185584415904259 0.6770904776175598 0.977556660740052 1.024722786948362 1.1075270959935515 1.336342289236154 1.0 19.116145985124454 2.0577797663593964 1.8198943588902141 1.1630944726619556 0.8652675694862676 0.3815579923462208 0.1499274863512919 0.3482455082992062 2.1825558472651165 0.0872298551300326 0.04635399345159394 114.22989204562568 -2.0577797663593964 -0.29782690317568805 LTRPAAS(ph)PAVGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTRPAASPAVGEK 13 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 LT(0.035)RPAAS(0.965)PAVGEK;LTRPAAS(1)PAVGEK;LT(0.007)RPAAS(0.993)PAVGEK 204.94 1.9423e-07 1472310000.0 750866.0 720779.0 590672.0 529700.0 614063.0 780807.0 700743.0 724051.0 1057040.0 831605.0 True False 746823.420885055 744769.6932948936 673833.4833869397 596759.9656886358 692260.2832134458 726831.6499119737 666845.3839917824 778083.3622764797 796546.6556103255 778531.2569271406 0.95927223761415 0.9566342862513911 0.8655188566822063 0.7665202397191407 0.8891875272237547 0.9335934086715735 0.8565428530433296 0.9994246927831405 1.0231402381380186 1.0 19.57039543706615 1.6562682856271667 5.393547346213005 1.0113262603792887 0.888388750865855 0.5058840715383194 0.0533801534054621 0.1279864467569244 8.097447181626373 0.031066294643463898 0.015065331477198438 45.31774440378165 -1.6562682856271667 -0.12293750951343374 LTS(ph)DEEGEPSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTSDEEGEPSGK 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 LT(0.02)S(0.98)DEEGEPSGK;LT(0.008)S(0.992)DEEGEPSGK 205.8 1.0232e-07 721410000.0 1294700.0 1028450.0 953600.0 880980.0 932430.0 1290010.0 1173810.0 1167960.0 1622420.0 1201830.0 True False 1287729.479054693 1062681.336538846 1087858.591160212 992511.9776710848 1051169.4335543963 1200834.6450569036 1117028.3259103491 1255119.1059807073 1222596.330314184 1125128.18046157 1.1445180215168176 0.9444980180861651 0.9668752503505258 0.8821323604781804 0.9342663812074878 1.067286968640565 0.9928009495345695 1.115534325578629 1.0866284851319155 1.0 20.101657939461614 2.7286970413180365 24.404650544619304 1.0591549738030943 0.967243096062582 0.2200620582802083 0.07223357846594367 679.7200874818643 1681772.0311202381 0.02347857714456563 0.02239538767160804 535.4230224538385 -2.7286970413180365 -0.09191187774051235 LTS(ph)S(ph)EMKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTSSEMKK 8 1 A0A0A0MRJ7;P12259 A0A0A0MRJ7 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain 2 LT(0.001)S(0.999)S(1)EMKK 58.433 0.06904400000000001 216090000.0 54491.0 69077.0 69797.0 63913.0 66727.0 74991.0 78545.0 64750.0 82960.0 83240.0 True False 54197.626510519236 71376.18618707173 79623.8109136004 72004.37924685255 75224.28792808493 69807.048679826 74745.47827896201 69581.97379383797 62515.61960704672 77927.55193465056 0.6954873490183413 0.9159300454725852 1.0217671277595415 0.9239912901053899 0.9653105488437188 0.8957941953362739 0.9591662566487779 0.892905937199065 0.8022274286182098 1.0 16.24984587486922 4.734095284692548 5.427634046690175 0.9302827555819561 0.6871328708064389 0.5928301414717159 0.05860400823415706 0.09770550199953933 10.863785385383517 0.013816499317330493 0.08830669800338165 54211.98190460971 -4.734095284692548 -0.24314988477551713 LTSNPLASHDYILK ddPTM_BT-474_Trastuzumab_2h_R1 2 LTSNPLASHDYILK 14 0 Q969X5;Q969X5-2 Q969X5 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 0 ; 200.55 1.9084e-08 2644500000.0 1832330.0 2580100.0 2900300.0 1877170.0 2059340.0 2603000.0 2652600.0 2065340.0 3474100.0 2594100.0 False True 1822464.9388710032 2665977.068796611 3308637.0301404814 2114819.529529426 2321584.7423355235 2423060.7368029105 2524283.604083957 2219466.1583840167 2617954.6055549793 2428542.317079256 0.7504357350720715 1.0977684226655402 1.3623962847473428 0.8708184801460919 0.9559581177599707 0.997742851653111 1.039423355455402 0.91390878502513 1.0779942301781773 1.0 21.211659194705156 LTSPVTSIS(ph)PIQASEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTSPVTSISPIQASEK 16 0 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 LTSPVTSIS(1)PIQASEK 318.94 5.946399999999999e-58 107500000.0 139060.0 138150.0 131500.0 121900.0 104670.0 140090.0 138070.0 154880.0 162430.0 141670.0 True False 138311.3164110184 142748.2392365616 150014.05698151013 137332.52750131136 117999.1040723044 130405.9080363886 131391.02662137977 166437.93206470448 122401.30295048916 132628.49931021096 1.0428476317711748 1.076301398108118 1.13108462933472 1.0354677027604597 0.889696442966687 0.9832419782672513 0.9906696321283346 1.2549183088878588 0.9228883956848449 1.0 17.01703129057883 LTSS(ph)CPDLPSQTDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTSSCPDLPSQTDKK 15 1 P56962 P56962 STX17 Syntaxin-17 1 LTS(0.014)S(0.986)CPDLPSQTDKK;LTS(0.001)S(0.999)CPDLPSQTDKK;LT(0.004)S(0.032)S(0.964)CPDLPSQTDKK 262.5 3.2309e-25 1649790000.0 1491230.0 1065500.0 965170.0 972210.0 944220.0 1400090.0 1323780.0 1312870.0 2154640.0 1407370.0 True False 1483201.3833712295 1100964.5233916484 1101057.5465919683 1095291.6863170627 1064460.8201695913 1303305.0737573514 1259743.704069313 1410843.0260187788 1623657.8426968053 1317550.441689923 1.12572645148131 0.8356147047998588 0.8356853079413981 0.831309110953061 0.8079089699247396 0.9891879904694199 0.9561255980860469 1.070807599752459 1.2323306883144918 1.0 20.329426765025655 1.9186361021802512 1.5972420146302977 1.1201561545272742 0.885545366577076 0.4194987836919607 0.10398724800226143 0.33768979836901847 1.6070147518991147 0.0699276229364604 0.03180040418121706 82.91557220621534 -1.9186361021802512 -0.23461078795019819 LTTLADLFRPPIDLMHK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTTLADLFRPPIDLMHK 17 1 O94888 O94888 UBXN7 UBX domain-containing protein 7 0 102.58 0.00056536 47948000.0 87992.0 92536.0 80166.0 72593.0 75891.0 89214.0 82163.0 74764.0 114910.0 92846.0 False True 87518.26084883035 95616.0048208068 91452.67598463676 81783.26635687212 85555.26900880155 83046.84616716675 78188.46179685976 80343.26932389943 86591.97021511258 86920.4887905402 1.0068772284487568 1.100039888768009 1.0521417591773807 0.9408974511631235 0.984293464052779 0.9554346428871552 0.8995400610928137 0.9243306203386584 0.9962204702251586 1.0 16.40740866697368 3.7501265221167297 10.538516958969206 0.9500709461639647 1.0577805965744242 0.5819248439828502 0.036785060250656844 0.2471767403746974 216.95743751315504 0.00959151439372084 0.016640025878332135 5625.051747959716 -3.7501265221167297 0.10770965041045955 LTTLPSDFCGLTHLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTTLPSDFCGLTHLVK 16 0 Q96AG4 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 0 193.96 2.9033999999999995e-10 219550000.0 278830.0 392990.0 442640.0 352020.0 451770.0 556990.0 408380.0 341690.0 524580.0 438560.0 False True 277328.8102609253 406070.43458252837 504959.8645041495 396585.69590657647 509300.23164942104 518486.59231342847 388625.0992369016 367188.6428666632 395304.2880118678 410570.725329894 0.6754714672803117 0.989038939043329 1.2298973924612226 0.9659375874593091 1.2404689380622493 1.2628435500286193 0.946548487899718 0.894337126865601 0.9628165468793236 1.0 18.64727123795966 -1.2941668763204357 8.41661743316966 0.999999969609568 1.023498113331817 0.0003174260873906043 0.17287929091026022 9.038618146931293e-08 7.483580286325051e-09 0.17252828769662798 0.04066526073332971 0.05079642213648938 1.2941668763204357 0.02349814372224901 LTTPTYGDLNHLVS(ph)ATMSGVTTCLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTTPTYGDLNHLVSATMSGVTTCLR 25 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;Q13885;Q9BVA1;P04350 Q5JP53;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain 1 LTTPTYGDLNHLVS(0.989)AT(0.01)MS(0.001)GVTTCLR;LTTPTYGDLNHLVS(0.999)AT(0.001)MSGVTTCLR 155.58 3.5252e-08 151224000.0 135766.0 121192.0 99607.0 116393.0 98449.0 120409.0 119925.0 96162.0 155393.0 128411.0 True False 135035.05094102048 125225.802457889 113630.79980043549 131128.34186595673 110985.8965970602 112085.4092422979 114123.76959201098 103338.09674074191 117098.47730952037 120215.70004181196 1.1232730075527093 1.0416759409489318 0.9452242906784539 1.0907755128518926 0.9232229780175005 0.9323691431594519 0.949325001246242 0.8596056646910522 0.9740697535246445 1.0 16.875265797219207 5.981189696424253 0.4533948306881353 0.9258489323879663 1.6388531586363044 0.4676695595873268 0.0560511943750295 11.34422840679838 0.755521931392645 0.03461036962596257 5.514319470065229 957612.2574830955 -5.981189696424253 0.7130042262483381 LTTPTYGDLNHLVSATMS(ph)GVTTCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LTTPTYGDLNHLVSATMSGVTTCLR 25 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;Q13885;Q9BVA1;P04350 Q5JP53;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain 1 LTTPTYGDLNHLVSAT(0.088)MS(0.904)GVT(0.006)T(0.002)CLR 131.56 5.119e-05 173270000.0 56976.0 55811.0 49005.0 50885.0 47088.0 51024.0 50483.0 45882.0 75382.0 58937.0 True False 56669.24754662866 57668.63539653807 55904.47804090419 57327.035782643376 53084.37768755773 47496.83097757654 48040.944426212154 49305.947824075156 56805.116167049135 55175.590201495696 1.0270709808391407 1.0451838428177755 1.0132103315387597 1.0389927062545379 0.9620989552390637 0.8608305013888007 0.8706919898957395 0.8936188565272216 1.029533457813547 1.0 15.751742536337382 3.0748220411658336 4.063159263444063 0.9162823917573564 1.030377123548472 0.446969197037436 0.051246580894340414 0.17694999942222459 5.720158583003357 0.015351615892930423 0.018435734495161917 1188.0153201611356 -3.0748220411658336 0.11409473179111562 LTTPTYGDLNHLVSATMSGVTTCLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LTTPTYGDLNHLVSATMSGVTTCLR 25 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;Q13885;Q9BVA1;P04350 Q5JP53;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain 0 ;;;;; 336.14 4.7113999999999975e-88 25009550000.0 4407740.0 5306490.0 4643110.0 5023280.0 5469720.0 5306710.0 5376530.0 4926790.0 5995520.0 5524250.0 False True 4384009.217585957 5483113.311809057 5296819.5293644015 5659226.732951505 6166256.420429587 4939869.628351658 5116446.7035608515 5294452.087532705 4518004.431851982 5171687.635451626 0.8476941235843057 1.060217418047955 1.0241955629831554 1.0942707935718752 1.1923102969638477 0.9551755590359191 0.9893185869324163 1.0237377932958547 0.8736035024391878 1.0 22.302203709825413 -0.7691255584590152 7.475747153656696 0.9999850735689483 1.0153073031885553 0.0 0.09601961817013427 0.0 0.0 0.09120705126605395 0.021497708147418616 0.17016664701192052 0.7691255584590152 0.015322229619607053 LTTTGQVT(ph)SPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTTTGQVTSPVK 12 0 P49916-3;P49916;P49916-4;P49916-2;K7ERZ5;K7ENR9 P49916-3 LIG3 DNA ligase 3 1 LTTTGQVT(0.933)S(0.067)PVK 245.4 2.049e-15 765390000.0 1811300.0 1269400.0 1110000.0 990260.0 912350.0 1571000.0 1568700.0 1332200.0 2137500.0 1635000.0 True False 1801548.1620543476 1311651.211631495 1266278.3517070415 1115626.814466354 1028532.3645778808 1462400.4677362158 1492815.987984055 1431615.528774529 1610741.7660325728 1530652.9002060771 1.1769802035535286 0.8569226971411369 0.827279882680494 0.7288568259441139 0.671956630036376 0.9554095951729669 0.9752805406000746 0.9352973025966799 1.0523233358887003 1.0 20.545715735294056 2.5060811852389295 24.39742523916595 0.9778298756107212 0.8413207031932807 0.2086583346506976 0.1273956392195302 859.4866551570566 724077.6449309634 0.0428401357817378 0.0403135336149476 320.68687474394864 -2.5060811852389295 -0.13650917241744054 LTTTGQVTS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 5 LTTTGQVTSPVK 12 0 P49916-3;P49916;P49916-4;P49916-2;K7ERZ5;K7ENR9 P49916-3 LIG3 DNA ligase 3 1 LTTTGQVT(0.263)S(0.737)PVK;LTTTGQVT(0.026)S(0.974)PVK;LTTTGQVT(0.001)S(0.999)PVK;LTTTGQVT(0.024)S(0.976)PVK;LTTTGQVT(0.006)S(0.994)PVK 293.69 3.5516e-36 12164980000.0 13020100.0 9055200.0 8594930.0 7373410.0 6818230.0 11396100.0 11649900.0 9925630.0 15555400.0 11641900.0 True False 12950001.228269106 9356596.858016009 9805021.435529191 8306882.9499872485 7686491.17568461 10608314.430533875 11086349.830060191 10666330.911927877 11721980.10168097 10898903.974867968 1.1881929832697682 0.8584897049824092 0.8996337116226378 0.7621759921128106 0.7052535918665828 0.9733377278115148 1.0171985968152815 0.9786608760407114 1.0755191649280471 1.0 23.37767972494525 2.4954065702638073 24.148786987568347 1.009995265672796 0.8720064269086403 0.2172152029966532 0.12091987352005311 747.0227113469334 986567.9424575375 0.040446244326333904 0.03744494654466721 312.90072560780743 -2.4954065702638073 -0.13798883876415569 LTVAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 LTVASPK 7 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK 132.01 0.0035774 2394940000.0 6935470.0 5408270.0 4700430.0 4589860.0 4075170.0 6437230.0 6531270.0 6135410.0 9719090.0 6537060.0 True False 6898130.200123158 5588280.997581753 5362209.687130026 5170935.805391056 4594118.744075025 5992239.441709481 6215327.518225675 6593265.449180702 7323950.498633696 6119859.234141357 1.1271713835573207 0.9131388131292227 0.8761982068501559 0.8449435857190204 0.7506902639925835 0.9791466130920278 1.015599751633456 1.0773557359617545 1.1967514641145627 1.0 22.545067038493446 2.1415940045169495 2.067138798193953 1.0961225137821076 0.8984745159331685 0.39196179817342525 0.10041133619825256 0.3239706994916211 2.721794326674252 0.0528567705245325 0.03177290093607603 138.54600410065765 -2.1415940045169495 -0.19764799784893905 LTVEDPVTVEYITR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTVEDPVTVEYITR 14 0 O14818;H0Y586;O14818-2;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3;A0A087WYS6 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 0 ; 103.21 0.0026261 140825000.0 171087.0 202830.0 212330.0 199766.0 200456.0 213010.0 215660.0 188424.0 224320.0 202610.0 False True 170165.88660155245 209581.07393667576 242224.2183945554 225056.3551175308 225982.88340420194 198285.12007160482 205227.70189879608 202485.1556776848 169039.34173400098 189679.25633685218 0.8971243871778691 1.104923532410312 1.2770200762722752 1.1865101090329682 1.1913948196996196 1.045370610898376 1.0819723034675512 1.067513441312162 0.8911851775388834 1.0 17.53320238609966 1.5664485888191082 1.5588993295958904 0.9501211866132754 1.1284359439886473 0.2818143313335264 0.10017233554135672 0.4696944704592622 2.236390754576825 0.08811675664152185 0.030443403335615467 36.8509415634711 -1.5664485888191082 0.17831475737537195 LTVENS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTVENSPK 8 0 O43583;F8VVL1 O43583 DENR Density-regulated protein 1 LTVENS(1)PK 87.184 0.016263 416960000.0 358310.0 288480.0 259330.0 221460.0 242850.0 359790.0 365470.0 317160.0 506950.0 352460.0 True False 356380.89877198316 298081.8824101575 295841.40986323165 249496.81329319434 273775.5080152779 334918.56415455986 347790.81986902026 340828.08970584726 382018.96528197086 329965.7010438122 1.0800543742716568 0.903372324660431 0.8965823081834509 0.7561295386276122 0.8297089883864218 1.01501023620055 1.054021126343799 1.032919750833717 1.157753560668559 1.0 18.331956542829985 2.5789794409245412 4.605788191290264 1.057823920520275 0.8869510246731714 0.47079349324546294 0.08499029683714968 0.20865796000684103 7.253773893479779 0.02951956892692406 0.027467317080648555 379.2970289987776 -2.5789794409245412 -0.17087289584710363 LTVIDTPGFGDHINNENCWQPIMK ddPTM_BT-474_Trastuzumab_2h_R1 1 LTVIDTPGFGDHINNENCWQPIMK 24 0 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4;K7EL40;K7EK18;K7EIE4;K7EQD7;K7ER52;K7ELJ9;K7EJZ2 Q9UHD8 SEPT9 Septin-9 0 77.1 0.00012458 0.0 67432.0 75113.0 55670.0 57428.0 68440.0 78070.0 72171.0 74593.0 81468.0 79055.0 False True 67068.9536043995 77613.0907982327 63507.85210768563 64698.3789117745 77155.42832433856 72673.20465701232 68679.81301000642 80159.50843557916 61391.30301527094 74009.64221760935 0.9062191303019376 1.0486889069133478 0.8581024067236337 0.8741885107557054 1.042505084641265 0.9819423858763224 0.9279846645936792 1.083095472882945 0.8295041183250568 1.0 16.17542562155209 3.241555753040342 24.999934656235236 0.985306962593709 0.9263134515019837 0.09948230629516497 0.07960596697738925 178.81981826991313 1492564.1216859422 0.021929591021716776 0.02847212079632783 1744.0372358279528 -3.241555753040342 -0.05899351109172524 LTVNADVGYYSWR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTVNADVGYYSWR 13 0 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;H0YGA9;H0YFF3;H0YH17 Q9Y365 STARD10 PCTP-like protein 0 ; 269.44 1.0554e-24 2967700000.0 353270.0 423450.0 398930.0 390060.0 426190.0 376970.0 455870.0 390700.0 506180.0 448680.0 False True 351368.03357198654 437544.27726907004 455095.87643827975 439441.556006247 480462.7702739602 350910.9511919293 433817.8265074842 419856.01793440036 381438.7214644996 420044.8582657255 0.8365012132816225 1.0416608337395104 1.0834458927012518 1.0461776816423995 1.1438368089010473 0.835413038123511 1.0327892794560665 0.9995504281802072 0.9080904431002387 1.0 18.68018388171321 2.7493168648518056 24.999255970639513 0.9653105262480421 1.034786194125476 0.14317913610151867 0.0899057184525715 1602.984587379304 3725591.8353317427 0.02745979276172126 0.02885313588407997 561.4574706508193 -2.7493168648518056 0.06947566787743376 LTWFVNEGLVDGWDDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTWFVNEGLVDGWDDPR 17 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 154.07 3.5255e-07 455100000.0 329590.0 344120.0 327970.0 323260.0 342970.0 367620.0 349030.0 318020.0 358470.0 340900.0 False True 327815.52406089177 355573.8261750674 374145.3252336563 364184.6828554058 386645.1965575449 342207.2946843967 332146.0854759192 341752.2672728386 270129.8717519048 319143.4701408263 1.027172901003548 1.1141504039489378 1.1723420976420407 1.1411315503171802 1.211509031931415 1.0722678879608383 1.0407422258376626 1.0708421109854946 0.8464214280577521 1.0 18.283845604161193 1.6533938702142503 1.4103067865128058 0.9366744576407099 1.1282271162459556 0.5379170132406491 0.06628682161064621 0.29832672589669035 1.1473554152820418 0.054727888609054004 0.020072833365104223 45.01879541257571 -1.6533938702142503 0.19155265860524573 LTWFVNEGLVDGWDDPRFPTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTWFVNEGLVDGWDDPRFPTVR 22 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 207.38 7.434999999999998e-23 908170000.0 42243.0 71631.0 66779.0 68875.0 70313.0 67853.0 73583.0 70577.0 93235.0 77531.0 False True 42015.56838163853 74015.1945331461 76180.90274652658 77594.56793808707 79266.94377219779 63162.481818781416 70023.50917564263 75843.8141227443 70258.4835349928 72582.90520237132 0.5788631395298002 1.0197331496552993 1.0495708670536616 1.0690474254473907 1.0920883305950684 0.8702115414459584 0.9647383082890836 1.0449266795160803 0.9679756319907876 1.0 16.147342182814366 4.739267277257363 24.73939885311574 1.0110358349866466 0.5788629842293785 0.8195772132108373 0.06049375903202871 20.90399332509267 731658.6639743536 0.015029921693257916 0.09030847694046894 54861.44941133237 -4.739267277257363 -0.4321728507572681 LTWHAYPEDAENK ddPTM_BT-474_Trastuzumab_2h_R1 5 LTWHAYPEDAENK 13 0 P45973 P45973 CBX5 Chromobox protein homolog 5 0 ;;;; 173.25 2.1997e-05 2426010000.0 2449330.0 2301450.0 1827890.0 1879720.0 1962580.0 2493650.0 2202220.0 2401050.0 3480180.0 2483670.0 False True 2436143.079426145 2378052.371994096 2085241.0236953006 2117692.3592679687 2212502.9298769734 2321269.844920697 2095690.2053026378 2580228.543284854 2622536.271022799 2325160.054223132 1.0477313486447686 1.022747818015752 0.896816122360234 0.9107727252675167 0.9515486582777207 0.9983269068744884 0.9013100846525754 1.1096993252565333 1.127894944805864 1.0 21.148898598012106 1.6960425422176753 8.001397535247289 1.0879389868080405 0.9604683837364248 0.4660022095327575 0.05743509322932243 0.09977358027079931 12.729441670870099 0.028603362141458918 0.01506577358771858 49.66409685648552 -1.6960425422176753 -0.12747060307161562 LTWHAYPEDAENKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 LTWHAYPEDAENKEK 15 1 P45973 P45973 CBX5 Chromobox protein homolog 5 0 ;; 163.8 9.1178e-07 1262840000.0 3183840.0 2840580.0 2321630.0 2606350.0 2625220.0 3522450.0 3398290.0 3505180.0 6357960.0 3641230.0 False True 3166698.5591978813 2935126.988133132 2648495.3240302913 2936313.6427649134 2959526.206101987 3278951.3224554053 3233901.729971528 3766754.330543388 4791125.950299161 3408843.583986157 0.9289656392784319 0.8610330500119102 0.776948328304713 0.8613811606255376 0.8681906732256816 0.9618955055195401 0.9486799996231979 1.104994769557219 1.4054989125363802 1.0 21.700850971739943 1.7453383246040721 2.096083435680995 1.2123468784064402 0.8717682711009928 0.623994563189125 0.10302039726792343 0.17295517382065564 1.5450515360460149 0.0666782163667708 0.028215195916154328 55.63374871921242 -1.7453383246040721 -0.3405786073054474 LTWHSCPEDEAQ ddPTM_BT-474_Trastuzumab_2h_R1 6 LTWHSCPEDEAQ 12 0 Q13185 Q13185 CBX3 Chromobox protein homolog 3 0 ;;;;; 163.86 0.00013685 6168650000.0 4118830.0 5295430.0 4700680.0 5502640.0 4756710.0 4921600.0 5021450.0 4539410.0 5976510.0 5242330.0 False True 4096654.6769250347 5471685.186394963 5362494.884956991 6199273.659801605 5362448.823270957 4581381.376200234 4778543.27969818 4878163.824856916 4503679.1916310275 4907760.011215482 0.8347300331644447 1.1149047985008984 1.0926562979245775 1.2631574579104694 1.0926469124440468 0.9334974338049559 0.9736709351675695 0.9939695123048131 0.9176649186877461 1.0 22.226633272462223 2.7484819851790165 23.62183792619075 0.9667688103711713 1.0925002976042466 0.2436048382488537 0.10073797324548271 455.5062219585832 1084515.4890409787 0.031366789793672675 0.032864067802804 560.3791719851479 -2.7484819851790165 0.12573148723307526 LTYEIEDEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 LTYEIEDEKR 10 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 196.76 5.2506e-07 2199380000.0 1482700.0 1457110.0 1196918.0 1315544.0 1266081.0 2017370.0 1957340.0 1604230.0 2479020.0 1936530.0 False True 1474717.307943456 1505609.0255084063 1365433.6506022424 1482091.7355142354 1427308.9106999836 1877913.9602781716 1862655.9864350792 1723945.7887148815 1868098.7381661152 1812938.9974532535 0.8134401157540777 0.8304796949171636 0.7531602842237664 0.8175077802376255 0.7872900923335048 1.0358395748098488 1.0274234207834165 0.9509121879647433 1.0304255911480464 1.0 20.7898989508032 2.7419777697612195 24.99616245716876 1.002900999033248 0.8003767517861192 0.9240149000320546 0.02987662251574619 77.90883414274904 569897.1759447963 0.00958692878222789 0.009799004394810518 552.0491808070421 -2.7419777697612195 -0.2025242472471288 LTYEIEDEKRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LTYEIEDEKRR 11 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 181.31 3.532e-06 560770000.0 677910.0 864320.0 808570.0 799110.0 813360.0 761050.0 860280.0 719430.0 865260.0 823070.0 False True 674260.2078828809 893088.3687075273 922409.6277835713 900277.2440654064 916936.5748375802 708440.4048189997 818664.9698112584 773117.519791518 652028.2668899859 770540.9679343202 0.8750478377424235 1.1590407335533817 1.1970935565650496 1.1683703807195165 1.1899906857590192 0.9194065394318996 1.062454825738792 1.0033438220216961 0.8461954575081903 1.0 19.555512138074253 2.73753254507392 24.997432231180028 0.9775690951659081 1.1273963480368825 0.35125325867587165 0.10205427797259098 109.63742969240603 2665796.7704850473 0.03237331865184847 0.032166029193899166 546.4274964231796 -2.73753254507392 0.14982725287097443 LVAFCPFASSQVALENANAVSEGVVHEDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVAFCPFASSQVALENANAVSEGVVHEDLR 30 0 O00567;A0A494C128;Q5JXT2 O00567 NOP56 Nucleolar protein 56 0 275.73 2.3963e-71 217860000.0 126380.0 147220.0 166510.0 184690.0 164380.0 153530.0 174620.0 151750.0 191160.0 171730.0 False True 125699.58412213811 152120.12870363073 189953.16066913484 208071.7350633077 185312.8186434066 142916.83247074572 166172.96348682078 163074.3555708863 144051.1794127657 160770.0443745501 0.7818594851494384 0.9461969690649121 1.1815208573718874 1.2942195536038892 1.152657631988199 0.8889518754985767 1.0336065038315432 1.0143329636145886 0.896007586321031 1.0 17.294639094521806 2.7446292464852626 24.81534192334103 0.9769410531464472 1.0828500447293592 0.12234741039148689 0.13710895436061157 1084.5782591955353 4434966.459347575 0.04649155455069983 0.04817235608282928 555.4298890330266 -2.7446292464852626 0.105908991582912 LVAFGTSHGFGLFDHQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVAFGTSHGFGLFDHQQR 18 0 J3QRV5;Q6P1M3;Q6P1M3-2 J3QRV5 LLGL2 Lethal(2) giant larvae protein homolog 2 0 288.25 1.5040999999999994e-40 230970000.0 122080.0 104840.0 93940.0 86501.0 73882.0 100130.0 104420.0 66198.0 162720.0 101220.0 False True 121422.73484436305 108329.53602288173 107165.93545888239 97452.01773085268 83290.43476707734 93208.2487806667 99368.80567686308 71138.03090663295 122619.83633629011 94760.05294119814 1.2813704834009538 1.143198348465507 1.130918906571132 1.0284082237831271 0.8789614629992019 0.9836238571806795 1.0486360295569361 0.7507175091045647 1.2940034595841765 1.0 16.531991384142607 4.10336610983647 1.246196320131933 0.9675990448537144 1.2671361783129824 0.3057811884507965 0.132879563955194 0.6527596069327436 1.6825369699700357 0.0393459047814 0.1899470295021149 12687.209457321936 -4.10336610983647 0.299537133459268 LVAIVDPHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVAIVDPHIK 10 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 82.749 0.017079 683790000.0 655600.0 858180.0 734990.0 718320.0 756870.0 809160.0 914770.0 770880.0 1127960.0 809360.0 False True 652070.3224440068 886744.0025192357 838470.2033523953 809259.238348992 853252.9081800423 753224.6737577566 870519.0803392441 828406.9800493232 849989.3718896388 757705.9518720416 0.8605849285371932 1.170300959532367 1.1065904936879696 1.0680386452681008 1.1261003111720789 0.9940857292948363 1.1488877422547341 1.0933093213833185 1.1217931834765127 1.0 19.531278554916735 4.750148371832899 24.841277611539073 1.0952570362585714 0.8605847769463312 0.6134589824891808 0.05508715053854545 1012.1558875118095 2169767.5017999634 0.012083178142046475 0.19669004021713468 56253.347561052244 -4.750148371832899 -0.23467225931224023 LVAIVDVIDQNR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVAIVDVIDQNR 12 0 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 ;; 142.43 0.00014273 315060000.0 381926.0 382937.0 417988.0 438503.0 401762.0 455266.0 451641.0 341909.0 432498.0 421787.0 False True 379869.7528519673 395682.8265546955 476837.0771831744 494017.4348392739 452924.0092700598 423794.53300088923 429793.3993938337 367423.9857587232 325914.6630762833 394868.1925499814 0.9620165919134759 1.002063052988526 1.2075854327588504 1.251094527642265 1.1470258121961288 1.0732556863192935 1.0884477592847177 0.9304978032947429 0.8253758323039145 1.0 18.591011634844442 1.7328271030870588 3.1699866855494077 0.9012265614474774 1.1132551315129051 0.47085624832806516 0.0902605495257797 0.1968159210512898 4.222934749539193 0.056406326437122595 0.026562684359333087 54.05390861676107 -1.7328271030870588 0.21202857006542775 LVCSVTDEDGPETHFDELEDVFLLETDNPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVCSVTDEDGPETHFDELEDVFLLETDNPR 30 0 Q99985-2;Q99985 Q99985-2 SEMA3C Semaphorin-3C 0 ;; 316.82 1.9075999999999992e-92 123453000.0 71086.0 99319.0 84646.0 86239.0 81080.0 88560.0 81678.0 66891.0 88875.0 83576.0 False True 70703.28087439704 102624.77287539668 96563.42104377877 97156.84855771619 91405.05740118875 82438.0556478162 77726.92309973962 71882.74608561557 66972.94711398588 78242.10812698651 0.903647442111938 1.3116309789204201 1.2341618005365713 1.2417463036659386 1.1682335712739085 1.0536277411393324 0.9934155017089935 0.9187220002936305 0.8559706367482987 1.0 16.255657621815256 2.3999471933775234 1.6409198470433628 0.9207157327696436 1.189257187005411 0.5096938661271073 0.10661866443127552 0.27765526126955725 1.5172610069075152 0.049823588999978116 0.03592942468218933 251.15810254311597 -2.3999471933775234 0.26854145423576736 LVCYDLFHWACLNER ddPTM_BT-474_Trastuzumab_2h_R1 2 LVCYDLFHWACLNER 15 0 O95159;E9PQ47;E9PNY1;E9PQA5 O95159 ZFPL1 Zinc finger protein-like 1 0 ; 147.12 3.7645e-06 698680000.0 693560.0 1073530.0 1049630.0 988530.0 728210.0 737300.0 879150.0 750910.0 1161700.0 812950.0 False True 689825.9500217607 1109261.79708741 1197408.7804524882 1113677.7966437351 820943.2270611707 686332.1864175135 836622.1558208585 806946.7172437186 875414.6009824743 761066.8349984884 0.9063933918801372 1.4575090466129865 1.573329339012475 1.4633114273675414 1.0786742889181358 0.9018027784890622 1.0992755397395817 1.0602836441366168 1.1502466810082626 1.0 19.537663627622873 3.1885712517326765 7.544779250130692 1.047479097969843 1.3734527991369818 0.41058628028621635 0.17631926819586802 0.2128641932329818 27.036609413539185 0.05163979055688619 0.062218284483070714 1543.7296717447582 -3.1885712517326765 0.32597370116713886 LVDLDWR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVDLDWR 7 0 Q9P000;Q9P000-2 Q9P000 COMMD9 COMM domain-containing protein 9 0 ;; 105.12 0.018609 170641000.0 571120.0 675854.0 590356.0 648804.0 558746.0 631543.0 557258.0 540678.0 744806.0 632225.0 False True 568045.1533773968 698349.3918276288 673472.9933336602 730942.519876627 629898.9911529929 587885.9189023132 530301.3016077117 581026.137867254 561258.5411890792 591875.8592249454 0.9597369862681091 1.1798916629951917 1.137861906068555 1.2349591700424947 1.064241734707407 0.9932588223350468 0.895967107531865 0.9816689240005514 0.9482707098816984 1.0 19.174935089376724 2.8149565420928004 2.990482722416455 0.9562944860580463 1.1332657829398847 0.5410141213069962 0.07122645109246446 0.18765572853117804 3.287353508680553 0.02274401958791125 0.023820104603244054 653.065200062851 -2.8149565420928004 0.17697129688183832 LVDMMER ddPTM_BT-474_Trastuzumab_2h_R1 4 LVDMMER 7 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;;; 111.82 0.015108000000000003 372976000.0 312327.0 411116.0 367664.0 395334.0 310117.0 340037.0 351898.0 314845.0 472641.0 356749.0 False True 310645.466134792 424799.7475351304 419427.89540722314 445383.2438654915 349608.5617425314 316531.042550999 334875.349359095 338340.3326505152 356164.9586149248 333980.9733918146 0.9301292315546185 1.2719279880556862 1.2558436821943304 1.3335587334281576 1.0467918522184287 0.9477517217115718 1.00267792490751 1.0130527173881438 1.0664229012743331 1.0 18.349406390384196 3.079742045817921 7.633965370316389 1.0060688852822417 1.2066730789851203 0.4388444996083736 0.10317069339597179 0.21049965152653244 17.33528434675119 0.02961699483623958 0.03546017925432406 1201.5505479169167 -3.079742045817921 0.20060419370287863 LVDPLGEMLAPSWEEHATCLANAEEQDMQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVDPLGEMLAPSWEEHATCLANAEEQDMQR 30 0 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A494C099;A0A494C163;D6RCQ8;D6RF77 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ; 311.39 2.9837999999999988e-92 419920000.0 83217.0 106015.0 98466.0 111333.0 109767.0 122567.0 118645.0 103803.0 114172.0 114964.0 False True 82768.96891827788 109543.64518757911 112329.15691818518 125427.7463847702 123745.17681001849 114094.23178168354 112905.6880820858 111549.30696095379 86035.8404264192 107626.89909436776 0.7690360831236591 1.0178091732581716 1.043690358668556 1.1653940366227087 1.1497606811241319 1.0600903003035067 1.0490471158431274 1.0364444938913167 0.7993897543306769 1.0 16.71567916887523 1.3399899078447477 8.990413135710376 0.9003892335009187 1.0455123545333855 0.19258811492694383 0.11082611556935837 0.3876735210209115 30.352248048516422 0.0749597266871339 0.02737211656755723 21.877107852344714 -1.3399899078447477 0.14512312103246683 LVDQSGPPHEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVDQSGPPHEPK 12 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 162.93 6.1363e-05 981640000.0 1136460.0 1181140.0 1021290.0 1008280.0 1035670.0 1322100.0 1269560.0 1208400.0 1516780.0 1310580.0 False True 1130341.4256325758 1220453.5308857919 1165078.7547881852 1135928.1446187226 1167556.4356029741 1230706.3388886398 1208146.532609827 1298576.9441308687 1142989.8928107067 1226937.6623560116 0.9212704608496994 0.9947151907801342 0.9495826809578553 0.925823845392007 0.9516020833209966 1.0030716120698353 0.9846845277288976 1.0583886891509162 0.9315794338042365 1.0 20.226630520448488 2.742800882153769 6.726288204630604 1.0032148618235517 0.9498353892101771 0.3038369270113602 0.03455055657424143 0.15797569637509415 43.133351251537185 0.010760441231960977 0.010840851391308507 553.0964642075791 -2.742800882153769 -0.05337947261337461 LVDTGDKFR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVDTGDKFR 9 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 79.42699999999998 0.024599 422350000.0 966060.0 977700.0 962200.0 962450.0 904800.0 978420.0 1103400.0 871880.0 1480500.0 1138700.0 False True 960858.8402993556 1010242.1534678686 1097669.3964076727 1084296.0713177775 1020020.9168302375 910784.1283529404 1050024.3266026685 936944.1129169328 1115650.6126836147 1066027.1911098822 0.9013455269362953 0.9476701550324118 1.029682362290259 1.0171373491785654 0.9568432450285383 0.8543723236596693 0.9849883148941515 0.8789120209414584 1.0465498647572653 1.0 20.02381280665117 3.0025076703933493 24.962541335798733 0.9390222838247856 0.9774274579175904 0.0 0.06257284218818965 219.72786403725934 2187231.8088579844 0.017845341464448983 0.0212099230570741 1005.790826854291 -3.0025076703933493 0.03840517409280486 LVEAEVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEAEVHR 8 0 F8VZX1;H0YIC9;F8VYY9;P54619-2;P54619;P54619-3;H0YHF8 F8VZX1 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 0 ; 171.73 0.00028767 366280000.0 390310.0 476380.0 449500.0 472200.0 419410.0 441160.0 448120.0 355930.0 491040.0 449040.0 False True 388208.61432751815 492236.0203222091 512785.69287596014 531980.4715842436 472819.3774621684 410663.64757893665 426442.7236153591 382491.3039759186 370029.77159889333 420381.8827575142 0.9234665675434107 1.1709258664844555 1.2198092113587744 1.2654695490079004 1.124737760725291 0.9768823643996494 1.0144174644684698 0.9098662898290226 0.8802229277143585 1.0 18.681340969095825 2.713165543805914 2.956779163472241 0.9467032940560455 1.15695412892785 0.5045797491906313 0.09151157504465594 0.21629524186604945 3.8185463045436108 0.03220225531720985 0.031622312617673905 516.613253713926 -2.713165543805914 0.21025083487180452 LVEALCAEHQINLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEALCAEHQINLIK 15 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 ; 221.91 1.4716e-12 3043700000.0 3067000.0 3192700.0 3015700.0 2978000.0 2981300.0 3478900.0 3355400.0 3283400.0 4093900.0 3798900.0 False True 3050487.6127757337 3298967.089472096 3440284.3470657007 3355014.494658778 3360950.883450472 3238411.8314497247 3193086.4831272406 3528423.980767367 3085013.2004494765 3556450.9495980823 0.8577336383960172 0.9276008965749731 0.9673363687061367 0.9433602606097888 0.9450294496062981 0.9105740181277351 0.8978294733653206 0.9921193995846104 0.8674415151987732 1.0 21.76200683542125 LVEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEALR 6 0 O75688;O75688-3 O75688 PPM1B Protein phosphatase 1B 0 ; 118.06 0.05163 426750000.0 395230.0 495870.0 441830.0 457820.0 413060.0 437660.0 442630.0 365700.0 487860.0 453380.0 False True 393102.12559418083 512374.7331902546 504035.82354479464 515779.9650586574 465660.74260156724 407405.594340823 421218.29588919634 392990.3909869733 367633.4399890766 424444.90024185326 0.9261558458357894 1.2071643054217356 1.187517680758067 1.2151870944020307 1.0971052834802084 0.959855081563423 0.9923980607357554 0.9258925970439111 0.8661511536116823 1.0 18.69521775540644 2.7836269607558086 3.1087372766213246 0.9435726333928318 1.1444859052855274 0.5295369706142464 0.08403348852302822 0.1935712738229913 3.76638200722066 0.027484496935224638 0.02828683851799016 607.6128651979576 -2.7836269607558086 0.2009132718926956 LVEDEER ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEDEER 7 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 152.39 0.004227000000000001 811720000.0 1000840.0 1197520.0 1029180.0 1077210.0 1039400.0 1157650.0 1109190.0 1041480.0 1233470.0 1199120.0 False True 995451.5886437775 1237378.729283873 1174079.5982070754 1213584.6755511716 1171761.4289935327 1077624.3803149771 1055534.2421827198 1119200.526128283 929497.8461512025 1122591.134981719 0.8867445658743671 1.102252361278466 1.0458657311828805 1.0810567068756822 1.0438007146855068 0.959943782499695 0.9402659697645918 0.9969796582675746 0.827993217821321 1.0 20.09840114092675 2.6943198755486577 4.794819573321985 0.9477530324440793 1.0395351713643826 0.2770150693830954 0.06976385085519092 0.26636337446260905 14.418551209952536 0.021884645990297272 0.020991567049415287 494.67490102415366 -2.6943198755486577 0.09178213892030329 LVEDEERR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEDEERR 8 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 143.28 0.00096831 1516880000.0 898160.0 1143820.0 1000960.0 1065760.0 1118420.0 1101250.0 1004550.0 928310.0 1294830.0 1152680.0 False True 893324.406354957 1181891.3572462075 1141886.4674997116 1200685.1067251654 1260844.1576052979 1025123.1795636578 955956.0787463379 997585.206062666 975736.4963330779 1079114.9755410021 0.8278306080472092 1.095241363556909 1.0581694197388372 1.112657255194902 1.1684057641524137 0.949966595588875 0.8858704590463867 0.9244475599669423 0.9042006815296983 1.0 20.041417155934962 2.5039658767324795 21.275646353396823 0.9208404211087593 1.0585678104723963 0.315620252233785 0.0879510312252236 122.61196673780589 97175.71512910105 0.02819371231341476 0.02645887730089048 319.12871003105744 -2.5039658767324795 0.13772738936363704 LVEDKPGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 LVEDKPGSR 9 1 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 0 ;;;; 150.08 7.853e-05 2840830000.0 2696130.0 2665390.0 2461100.0 2396920.0 2393910.0 2787320.0 2804760.0 2632610.0 3649830.0 2770170.0 False True 2681614.3356482005 2754105.894887722 2807601.487735318 2700369.826238256 2698760.2486837693 2594639.1290455214 2669083.0435763123 2829068.7263227087 2750378.301716336 2593375.3789381427 1.0340247530020845 1.061977343216465 1.0826051294143504 1.0412568300636533 1.0406361804008397 1.0004872993387852 1.029192713578228 1.0908828507044246 1.060539991261303 1.0 21.3063996139792 -1.379239437620397 3.1028505991328057 0.9994003652119079 1.0506324515207448 0.25376314587639703 0.025113850242259733 5887371.271423928 9556162.746681975 33336.59903376104 0.006839018732471043 0.04176000696028748 1.379239437620397 0.05123208630883691 LVEDMENK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEDMENK 8 0 P47756-2;B1AK88;B1AK87;P47756 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 128.69 0.0026123 200780000.0 173273.0 162041.0 153601.0 150672.0 158376.0 186177.0 188008.0 177738.0 233570.0 175529.0 False True 172340.11742044028 167434.43672914698 175226.68567617418 169747.0597512516 178544.244831903 173307.0222035173 178913.33477969398 191001.71209527669 176009.80317765058 164326.5889420625 1.0487658663760322 1.0189126288514407 1.0663319113740917 1.0329859631608385 1.0865207266905132 1.054649909788008 1.0887668023266424 1.1623299267936438 1.0710975278608583 1.0 17.326206409571306 2.8534272681460746 1.2484071209571925 1.0978746258278593 1.041079510039299 0.050288093888543606 0.04162758257283576 0.648227541011016 2.0986175275515992 0.018251978015896186 0.019138420176333798 713.554695195479 -2.8534272681460746 -0.056795115788560224 LVEEEVNIPNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEEEVNIPNRR 12 1 Q9NZL9;Q9NZL9-3;E5RJR3 Q9NZL9 MAT2B Methionine adenosyltransferase 2 subunit beta 0 ; 119.45 0.00082803 462950000.0 315420.0 384570.0 284260.0 356950.0 322540.0 361130.0 354970.0 305480.0 411960.0 387320.0 False True 313721.8137664563 397370.17997252627 324281.33716778754 402139.8334010915 363613.55715564184 336165.93310858024 337798.7449829154 328276.4687960091 310437.9779811827 362600.9059986648 0.8651986483663434 1.0958885468807669 0.8943202617617885 1.1090425499449037 1.0027927430412453 0.92709623044852 0.9315992855907517 0.9053382475476162 0.8561423119619173 1.0 18.468023004257294 2.7012922970060234 5.051218227175342 0.917048656835852 1.0001886226618328 0.15926358766675508 0.07837331427338962 0.3080123990473944 20.305951270470924 0.023750705477807336 0.0228480079674948 502.6807993416459 -2.7012922970060234 0.08313996582598082 LVEEHLDSEIQKLDQMDEDELER ddPTM_BT-474_Trastuzumab_2h_R1 3 LVEEHLDSEIQKLDQMDEDELER 23 1 F8WCJ3;B8ZZX4;O14530-2;O14530;F8WBV5;G3XAJ4 F8WCJ3 TXNDC9 Thioredoxin domain-containing protein 9 0 ;; 227.2 5.2976999999999984e-33 129274000.0 133054.0 136206.0 127793.0 136379.0 130981.0 154360.0 167698.0 143599.0 230208.0 171189.0 False True 132337.6520476892 140739.5343717342 145785.14360333147 153644.5674167461 147660.65396478935 143689.4565243556 159585.80707142866 154315.08656094706 173476.32302915855 160263.57145772345 0.8257500493965908 0.878175452422514 0.9096586471729086 0.9586992603448664 0.9213613088844793 0.8965821441353564 0.995770939208892 0.9628831128454818 1.0824438857268357 1.0 17.290087006917123 7.09207912938152 0.20197438125045808 1.0352690724520939 0.32167357242110467 0.6790443744421375 0.03917020370594593 21.444174824052514 0.3577722215032388 0.07197239146793376 4.5111344856913 12361726.462212743 -7.09207912938152 -0.7135955000309893 LVEGILHAPDAGWGNLVYVVNYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEGILHAPDAGWGNLVYVVNYPK 24 0 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;K7EN94;A0A0A0N0M3;K7EJM5;A0A087WX29;A0A1W2PNU8;K7EJ99;A0A0A0MSV7 Q13148 TARDBP;TDP43 TAR DNA-binding protein 43 0 ; 326.67 1.0315999999999996e-86 1247710000.0 597930.0 674180.0 696980.0 618990.0 582860.0 733360.0 789530.0 649220.0 863140.0 696560.0 False True 594710.8113162679 696619.6737495842 795108.7257412386 697354.0705335252 657083.7661181171 682664.5493437505 751337.4176025055 697668.0930723614 650430.7124834408 652104.9444449816 0.9119863549300905 1.0682631372201754 1.2192956555757601 1.0693893313860026 1.0076350006475923 1.0468630166955393 1.1521725513705197 1.0698708835372495 0.9974325728154602 1.0 19.31474463313691 -1.3859735656354046 6.163082460089602 0.9999888482121219 1.067864102498865 0.04178051144651518 0.07960716388354533 1.2129181624662318e-05 1.208416856187153e-06 0.0766435629206942 0.01806209337527623 0.0411174747469946 1.3859735656354046 0.06787525428674324 LVEGLQGQTWAPDWVEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVEGLQGQTWAPDWVEELR 19 0 A1L0T0;M0R026;M0QZX5 A1L0T0 ILVBL Acetolactate synthase-like protein 0 142.85 3.514e-07 28623000.0 11679.0 15737.0 18562.0 18380.0 21777.0 26300.0 19610.0 14542.0 20369.0 21614.0 False True 11616.121561658878 16260.796531782607 21175.36825620372 20706.906115456142 24550.1718676084 24481.942903540737 18661.38938252522 15627.197882779768 15349.332880616357 20234.576015323622 0.574072891513121 0.803614393475224 1.0464942897823823 1.023342722860851 1.2132782939962063 1.2099063941345047 0.9222525526797779 0.7723017211205863 0.7585695331096795 1.0 14.304534999399465 4.548510214959426 2.832528910790233 0.986191345676116 0.5676663958220157 0.4495094487994047 0.14514489453374146 0.33543821682715236 4.58235971306598 0.04258667917881513 0.25914194969079213 35359.833792306636 -4.548510214959426 -0.41852494985410027 LVEHFCAEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEHFCAEFK 10 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ; 105.86 0.0040056 0.0 672650.0 768630.0 724040.0 588080.0 459730.0 646460.0 737970.0 522030.0 1224970.0 720950.0 False True 669028.5271384399 794213.3849033539 825978.5385315014 662530.8677027992 518273.8904668047 601771.7418031543 702271.5717808326 560986.5294146277 923092.5572570384 674938.3537636519 0.9912439016211524 1.1767198892677972 1.223783674354266 0.9816168602781794 0.7678833001217952 0.8915951189430866 1.0404973548543548 0.8311670633123813 1.3676694354522998 1.0 19.36439621248041 3.626434757507639 6.810224988948024 0.9579010860845765 1.1343737712806876 0.13681782351843885 0.16232817058196133 0.39510085841140646 21.173223671320038 0.0423406301463178 0.0658503981354833 4230.919453664801 -3.626434757507639 0.17647268519611115 LVEHGLNETIHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEHGLNETIHIR 13 0 Q7Z3B4-2;Q7Z3B4-3;Q7Z3B4 Q7Z3B4-2 NUP54 Nucleoporin p54 0 ; 185.87 4.7930000000000005e-06 625700000.0 271190.0 491210.0 634490.0 557150.0 568280.0 404200.0 551910.0 363440.0 294450.0 368070.0 False True 269729.9431720413 507559.6279072848 723820.6769140548 627685.1328741238 640647.0895405478 376258.60538445465 525212.0047990567 390561.73831092584 221886.74292785555 344579.457479419 0.7827801028682962 1.472982840068463 2.1005914926234017 1.8215976583909215 1.8592144007273337 1.0919356833885774 1.5242115958999862 1.133444637610915 0.6439349128672546 1.0 18.39447717055579 1.682904980866844 1.3921664624234777 0.816809731255653 1.5882148495646324 0.36028258181240946 0.3705474794572683 0.4377896508932372 1.632782948516914 0.3171012119034296 0.11861198573839958 48.18423639745167 -1.682904980866844 0.7714051183089794 LVEIDNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVEIDNGK 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 114.89 0.0059752 193700000.0 363190.0 404790.0 312490.0 308670.0 305640.0 412440.0 395980.0 362100.0 535580.0 390520.0 False True 361234.62539420265 418263.1904492775 356485.87578822824 347747.59035135194 344561.4423297896 383928.9935793285 376824.9346095025 389121.7407065432 403593.4854043164 365596.6792590067 0.9880686720851921 1.1440563171881528 0.9750796328641598 0.9511781973954704 0.9424632713517765 1.0501435471390983 1.030712137137715 1.0643470326240851 1.103930938930632 1.0 18.479893440789247 2.524091096516166 24.71671036536788 1.053378175953231 1.003272944924402 0.15406085783945123 0.05770315973104673 739.337916659769 389056.59606186417 0.019666329665408027 0.01854096394675104 334.26514728809224 -2.524091096516166 -0.05010523102882902 LVEIVHPSQEEDR ddPTM_BT-474_Trastuzumab_2h_R1 5 LVEIVHPSQEEDR 13 0 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3;E9PK08 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 0 ;;;; 247.32 2.8988e-17 2268200000.0 1783830.0 2540920.0 2464700.0 2530790.0 2451770.0 2734040.0 2637830.0 2272250.0 2441970.0 2666930.0 False True 1774226.0574821427 2625492.9861814263 2811708.3364435583 2851187.7545122528 2763988.3767206795 2545042.2500378895 2510228.085410838 2441816.8332517087 1840179.2142215488 2496724.244126352 0.7106215520821266 1.0515750757649782 1.1261589432866763 1.1419714296521897 1.1070459155523793 1.0193525600695421 1.0054086234458028 0.978008219768837 0.7370374275615929 1.0 21.251605057951025 1.4726131016838322 4.424795426195923 0.863333018794944 1.0336659545868605 0.1749296541326505 0.12924505666065186 0.2826510275303044 11.32677421226169 0.08452145428372025 0.03303658697041435 29.690198534999375 -1.4726131016838322 0.17033293579191655 LVEKPSPLTLAPHDFANIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVEKPSPLTLAPHDFANIK 19 1 P53618 P53618 COPB1 Coatomer subunit beta 0 ; 233.38 2.4851e-24 2156560000.0 3390400.0 3219300.0 3107900.0 2717800.0 3167200.0 3630600.0 3509900.0 3307200.0 4639700.0 3825500.0 False True 3372146.4631088492 3326452.4543920546 3545465.3056489374 3061873.201337687 3570524.1465348494 3379625.1675131163 3340112.7278799186 3554000.057621322 3496308.1037947773 3581353.3148246747 0.9415844142353023 0.9288255477677999 0.9899792045014988 0.8549486554882344 0.9969762357025768 0.9436726484157473 0.9326398247427409 0.9923623125676748 0.9762533311980528 1.0 21.77207342263812 1.7165368312772695 6.875617210370448 0.9878922099385864 0.9415658360283006 0.2653962455794875 0.03672168128991165 0.17339179523807746 20.546373036301222 0.01716904415869257 0.008922874588535693 52.063916085272574 -1.7165368312772695 -0.04632637391028582 LVELLMHNDYK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVELLMHNDYK 11 0 C9JYI4;P52294;Q5TFJ7;O60684;O15131 C9JYI4;O60684;O15131 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 0 ; 193.23 1.0444e-06 1362010000.0 1942050.0 1949290.0 1777200.0 1617570.0 1466970.0 2062900.0 2077300.0 1798190.0 2757600.0 2040900.0 False True 1931594.218582037 2014170.9392793097 2027414.3123006811 1822354.1961468114 1653779.9340875938 1920296.578544264 1976813.062943377 1932380.0688238041 2078026.4299468624 1910648.014697604 1.0109628794646135 1.0541821014573896 1.0611134529776576 0.953788548245624 0.8655597061132871 1.0050498908079555 1.034629637555845 1.0113741798379539 1.0876029566731835 1.0 20.86563059451434 -0.17163231290131503 7.644247652687241 1.000000004764539 1.0075795458213412 0.0014235773395268048 0.05938727371669982 0.0 0.0 0.0607979912694492 0.014330223969716019 0.6735466603284102 0.17163231290131503 0.0075795410568022525 LVEPHS(ph)PS(ph)PSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 2 LVEPHS(1)PS(0.963)PS(0.029)S(0.007)K 74.141 0.0070637 0.0 326340.0 278130.0 232950.0 247680.0 252290.0 370770.0 335820.0 326870.0 468900.0 366690.0 True False 324583.02169978287 287387.38891686476 265747.3351623024 279036.26260479767 284417.6360600138 345139.5425986993 319575.10364302003 351262.69921222836 353345.87793809315 343287.5302608961 0.9455135799809044 0.8371623306516621 0.7741246382014993 0.8128354164007416 0.8285114109558783 1.0053949304141507 0.9309254647267415 1.023231746708863 1.0293000671173602 1.0 18.389057927544677 2.7394076576235906 24.99248480193303 0.9956124592908064 0.834364690033681 0.7332524728329914 0.04762937414091438 40.316180629576905 1189569.7902059506 0.015491299917636512 0.015583097284523686 548.7918556852104 -2.7394076576235906 -0.16124776925712547 LVEPHS(ph)PSPSSK ddPTM_BT-474_Trastuzumab_2h_R1 6 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 LVEPHS(0.999)PS(0.001)PSSK;LVEPHS(0.99)PS(0.01)PSSK;LVEPHS(0.993)PS(0.007)PSSK;LVEPHS(0.991)PS(0.009)PSSK;LVEPHS(0.992)PS(0.008)PSSK;LVEPHS(0.999)PS(0.001)PSSK 167.61 3.1399e-05 5857790000.0 7534250.0 7348880.0 7067940.0 6778050.0 6552670.0 7873710.0 8117640.0 7316700.0 9499520.0 8163010.0 True False 7493686.43513387 7593483.028308236 8063044.51636422 7636150.435030886 7387113.683782041 7329418.960419678 7724958.740803781 7862709.307449776 7158490.583046438 7642039.713095533 0.9805872144700528 0.9936461093359553 1.0550906327465488 0.9992293578304029 0.9666416246337158 0.9590919748637079 1.0108503790638717 1.0288757455651663 0.9367251220612638 1.0 22.865526324237226 3.4789392061378948 24.997911151704457 0.9883326002377864 1.011328163600964 0.11815609965566942 0.030738549598821656 171.9033358327758 2363808.012261127 0.008989468604460232 0.012378151013874829 3012.58428396035 -3.4789392061378948 0.02299556336317754 LVEQLKEER ddPTM_BT-474_Trastuzumab_2h_R1 6 LVEQLKEER 9 1 O95232;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 0 ;;;;; 182.28 4.2413e-05 3062660000.0 5864260.0 6214300.0 5456180.0 5606650.0 5437690.0 6547910.0 6605190.0 6115330.0 8967760.0 6672400.0 False True 5832687.47574054 6421139.218876319 6224362.718033279 6316451.315137217 6130147.589786264 6095268.393822182 6285671.725423855 6571686.977616524 6757775.709827497 6246561.719470957 0.9337436717481966 1.027947774671175 0.9964462047387633 1.0111884903735777 0.9813634868407972 0.9757797437305096 1.0062610453092922 1.0520486745743869 1.0818392602706624 1.0 22.574630878269122 1.8341103891120178 3.7349977601290014 1.0500979912790505 0.990806732845785 0.41213123629876813 0.029936561786400286 0.20773792372621028 4.869169511623446 0.014403506423505507 0.007723167859789324 68.25121532558742 -1.8341103891120178 -0.05929125843326544 LVES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 LVESPK 6 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 LVES(1)PK;LVES(1)PK;LVES(1)PK;LVES(1)PK 112.17 0.028555 1138650000.0 4516930.0 3689670.0 3138270.0 3057680.0 3229680.0 4028590.0 4211810.0 3885280.0 6113400.0 3994110.0 True False 4492611.350758096 3812478.4354973803 3580111.1376681593 3444781.974489009 3640960.6041868688 3750103.0555808083 4008068.6596233365 4175219.322652083 4606834.485363053 3739202.4802703876 1.2014891877246585 1.019596680204837 0.9574531351426777 0.921261149313292 0.9737265161215836 1.0029152139708766 1.0719046857643042 1.1166069087411832 1.2320366467637573 1.0 21.834299165519628 1.994650591704068 2.5280119278413316 1.128579667739034 1.0045489537381636 0.21505310352491647 0.08752729220413476 0.3914870881607513 4.6974177468327944 0.04634756171462025 0.025714014662993903 98.77580816969689 -1.994650591704068 -0.12403071400087051 LVEVDSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVEVDSGR 8 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ;; 199.07 0.00030447 809930000.0 1029750.0 1401890.0 1241310.0 1367260.0 1392740.0 1410540.0 1301180.0 1210210.0 1428510.0 1364260.0 False True 1024205.94041598 1448551.0611896007 1416075.658340061 1540354.9758116752 1570097.1835832715 1313032.6898540047 1238236.952409697 1300522.0155218623 1076472.8515533055 1277191.7587982523 0.8019202546215032 1.134168813109619 1.1087416189347234 1.2060483206226142 1.2293355111065096 1.0280622943335276 0.9694996416002488 1.0182668393864067 0.842843562165004 1.0 20.284543718247377 2.4905311584343464 8.55058899381066 0.9697597668308192 1.107391888772084 0.23059466602063772 0.11747934255305627 0.2771450486121378 142.3782657897291 0.039650736802315276 0.035527937143213395 309.4077291898323 -2.4905311584343464 0.13763212194126473 LVEVNGENVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVEVNGENVEK 11 0 O14745;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 149.96 7.9362e-05 93091000.0 222330.0 183280.0 156160.0 159070.0 165510.0 211030.0 213330.0 196330.0 291350.0 231920.0 False True 221132.9999831849 189380.3640049005 178145.97063294772 179208.2456901853 186586.71744537193 196441.9928111862 203010.4129002604 210981.14154353976 219550.6963899838 217118.66704329845 1.0184891193122787 0.8722435826631789 0.8205004804926391 0.8253930817217436 0.8593766716896906 0.9047678649022434 0.9350205381455085 0.9717319308222598 1.0112013830031497 1.0 17.728124243195282 1.9313942360529242 1.401709757799821 1.003600168107883 0.8736458761965029 0.4842538076985201 0.05194748745606451 0.36170056755711816 1.3209216291296302 0.03902629829174651 0.017471810800361788 85.38748775305264 -1.9313942360529242 -0.12995429191138008 LVEYDIDEVVYDEDSPYQNIK ddPTM_BT-474_Trastuzumab_2h_R1 3 LVEYDIDEVVYDEDSPYQNIK 21 0 P52788;H7C2R7;P52788-2 P52788 SMS Spermine synthase 0 ;; 233.65 9.333999999999999e-30 121583000.0 124352.0 135709.0 119191.0 118124.0 114708.0 136989.0 145035.0 133781.0 173561.0 154573.0 False True 123682.5026488059 140225.9920271771 135972.05677325604 133078.48628847348 129315.3838724171 127519.27286741973 138019.10296249582 143764.41754615307 130789.21714824779 144708.01880339693 0.8547038627959056 0.9690271015159899 0.9396304219878117 0.9196344984121194 0.8936297030512693 0.8812177370811071 0.9537764672876297 0.9934792745761667 0.9038145793837487 1.0 17.142785343558398 2.063297622704621 7.817113367279213 0.9671697207944155 0.9135728840359405 0.31882593653251723 0.038062057732055454 0.29470712859300335 31.627440785932762 0.01413986001479746 0.010411502604281392 115.69047993042295 -2.063297622704621 -0.05359683675847504 LVFHTQLAHGSPTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVFHTQLAHGSPTGR 15 0 O14908 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 ; 133.91 2.2196e-05 889480000.0 332050.0 468650.0 496590.0 503220.0 388310.0 503700.0 499440.0 473730.0 677090.0 476790.0 False True 330262.27969422337 484248.7319450928 566505.555562343 566927.6004036907 437758.97680631053 468880.4045822606 475280.1791539216 509082.1381521981 510230.24204116664 446360.85399954434 0.73989973971723 1.0848817220552838 1.269164960337049 1.2701104842053856 0.9807288719067586 1.050451446135864 1.0647891160151037 1.1405169911085389 1.1430891339805698 1.0 18.767850982300313 4.729804834512319 4.79013328154039 1.1200699538329415 0.7210172256078515 0.587341909492878 0.0935990991860777 0.11930566363058373 7.827269344033893 0.023427694047900096 0.156908449644324 53679.051647771994 -4.729804834512319 -0.39905272822508997 LVFQHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVFQHSR 7 0 Q96T53-2;Q96T53 Q96T53-2 MBOAT4 Ghrelin O-acyltransferase 0 ; 88.029 0.018908 1013620000.0 1032510.0 1113620.0 1023540.0 1085820.0 929850.0 1183800.0 996930.0 934490.0 1406540.0 1381830.0 False True 1026951.0808826452 1150686.1685024942 1167645.5352308357 1223284.7006683664 1048260.8858472544 1101966.6923654573 948704.6872575654 1004226.3890440707 1059917.0636703896 1293640.4263558185 0.7938458477024899 0.8894945960710071 0.9026043956589157 0.9456141565661765 0.8103185896874006 0.8518338403119439 0.7333604206619175 0.7762793807186233 0.8193289588639194 1.0 20.303005238276025 3.198163544899537 24.40759483653562 0.8120879313871328 0.8847697351238408 0.06421088501878514 0.07532338320502452 198.92597572934739 120188.67667219997 0.02108045409153385 0.02519629561450171 1578.2054721903046 -3.198163544899537 0.07268180373670807 LVFVHSAEGNEFWSALLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LVFVHSAEGNEFWSALLEK 19 0 P07384;E9PRM1;E9PL37 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;; 261.02 3.899e-31 1975844000.0 1509829.0 1537459.0 1616427.0 1496240.0 1454988.0 1758737.0 1847601.0 1657268.0 2231539.0 1788590.0 False True 1501700.2484217728 1588632.3934014065 1844005.871364649 1685663.8305870576 1640272.0974104686 1637159.6508115786 1758225.4811087698 1780941.7535963866 1681606.1145406126 1674440.6549110624 0.8968369491133356 0.948754074228917 1.1012667818093516 1.0067026416511555 0.97959404688343 0.9777352490874249 1.0500375011511873 1.0636039852311046 1.004279315369305 1.0 20.675247814653545 4.446080004431389 9.223354877924287 1.0250136539284913 0.9096292216310329 0.5548537370517848 0.03712692446164431 0.1785286303905389 50.195067084658554 0.009527449023156649 0.026476401298693043 27930.58322703771 -4.446080004431389 -0.11538443229745843 LVGATATSS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 LVGATAT(0.025)S(0.049)S(0.926)PPPK;LVGATAT(0.001)S(0.004)S(0.995)PPPK;LVGATAT(0.006)S(0.07)S(0.924)PPPK;LVGATATS(0.003)S(0.997)PPPK;LVGAT(0.001)AT(0.029)S(0.029)S(0.941)PPPK 241.15 7.4288e-17 2721680000.0 4244060.0 3890310.0 3658250.0 3315940.0 3072570.0 4374640.0 4362040.0 3757640.0 5383430.0 4324450.0 True False 4221210.452519397 4019796.6166079473 4173299.8019209825 3735737.6640090114 3463843.576950802 4072231.4335948844 4151031.460589 4038054.177709297 4056755.810766195 4048459.8986520832 1.0426706842087854 0.9929199540660686 1.030836393688984 0.9227552594142796 0.855595377912493 1.0058717476615529 1.0253359461386953 0.9974297087773425 1.0020491525967379 1.0 21.948941756544475 2.538430399779761 24.99998391970626 1.0069949363131663 0.9671156208093247 0.11942894382846747 0.050339498065952656 542.8942784473309 221374.30011110462 0.017691238811056127 0.016679450128466354 345.4859574130306 -2.538430399779761 -0.039879315503841606 LVGIISS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 6 LVGIISSR 8 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 LVGIIS(0.004)S(0.996)R;LVGIIS(0.002)S(0.998)R;LVGIIS(0.005)S(0.995)R;LVGIIS(0.002)S(0.998)R;LVGIIS(0.002)S(0.998)R;LVGIIS(0.005)S(0.995)R 134.51 0.00091634 688415000.0 1742030.0 1906460.0 1721480.0 1810690.0 1679690.0 1952090.0 1797820.0 1715040.0 2312960.0 1908210.0 True False 1732651.1040377268 1969915.3686205943 1963849.4206276014 2039923.1683457727 1893588.56519737 1817146.6130255812 1710852.5782606562 1843024.9935966593 1742962.0000761158 1786426.404099226 0.9698978362959125 1.1027128596511588 1.099317282884563 1.1419015995648407 1.0599868882660064 1.0171964592864633 0.9576955279740861 1.0316825755416283 0.975669636362643 1.0 20.76864504936651 2.7425078985043263 3.268039943477533 0.9962947825168907 1.0830570886906659 0.4335849443310432 0.04519250654246342 0.23314152961371867 5.210034565427367 0.014947753872906665 0.014979431742456233 552.7234602226116 -2.7425078985043263 0.08676230617377512 LVGILDILDEENR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVGILDILDEENR 13 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 152.62 3.007e-06 0.0 10855.0 8654.6 10241.0 10785.0 13614.0 10484.0 11870.0 8945.7 10910.0 11977.0 False True 10796.557886103874 8942.663129183826 11682.843783632272 12150.37989418904 15347.66220350007 9759.265756681407 11295.802752196552 9613.273559344178 8221.376686510117 11212.61760597441 0.9628936137402164 0.7975535636227274 1.0419372348350944 1.0836345553882942 1.368784947711263 0.8703824655075533 1.0074188872879977 0.8573621162485684 0.7332254586234642 1.0 13.45283549679354 1.9063334414035271 1.9839547247714626 0.8469839571727823 1.0312112511416223 0.17152415832289358 0.15442022464510927 0.569343882131684 4.156576588107555 0.10034671360488287 0.047948975627078415 80.59970298464815 -1.9063334414035271 0.18422729396883997 LVGLNLS(ph)PPMS(ph)PVQLPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVGLNLSPPMSPVQLPLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 2 LVGLNLS(1)PPMS(1)PVQLPLR 91.371 0.0037027 62312000.0 82571.0 107040.0 94219.0 116140.0 93683.0 108170.0 97288.0 83794.0 111870.0 101560.0 True False 82126.44691050047 110602.76169295354 107484.21623377093 130843.31209189743 105612.9747473553 100692.46250479088 92581.80776374885 90047.13377731049 84301.1374811994 95078.35385010958 0.8637764915447768 1.1632801496260452 1.1304804078036428 1.3761629939257372 1.1107993614808844 1.0590471797979581 0.9737422243311393 0.9470834330942375 0.8866491064212114 1.0 16.536829304781392 2.3911298584734064 2.131241062604734 0.9426165234998128 1.1435236757825056 0.3304133919979195 0.11850356415967044 0.35421273577318985 3.292781964937823 0.05117779876997966 0.039299016521176657 246.11033891183885 -2.3911298584734064 0.20090715228269274 LVGLNLS(ph)PPMSPVQLPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVGLNLSPPMSPVQLPLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 LVGLNLS(0.5)PPMS(0.5)PVQLPLR;LVGLNLS(0.953)PPMS(0.047)PVQLPLR;LVGLNLS(1)PPMSPVQLPLR 240.61 6.121000000000001e-24 658460000.0 518350.0 646150.0 590500.0 569440.0 568760.0 633590.0 559210.0 461180.0 629380.0 579630.0 True False 515559.2611940989 667656.7121440768 673637.2672819905 641531.0456140018 641188.2146953639 589791.4146104328 532158.8759103477 495595.59342458844 474277.7322599208 542637.5171537903 0.9500988134736413 1.2303917275127412 1.241412998524894 1.1822460212093735 1.181614234965702 1.0868975991633811 0.9806894272655444 0.9133087517134028 0.8740231135281132 1.0 19.049629271302056 2.282651937868521 2.064390604912831 0.9215156501334086 1.1671734532537665 0.6111860943799172 0.08137505684928513 0.1984686102308195 1.7246955752205164 0.03700521574004528 0.025552727251857584 191.7131653687426 -2.282651937868521 0.2456578031203579 LVGLNLSPPMS(ph)PVQLPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVGLNLSPPMSPVQLPLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 LVGLNLS(0.317)PPMS(0.683)PVQLPLR 77.124 0.055108 99827000.0 165220.0 185670.0 177930.0 160200.0 180410.0 199860.0 198810.0 170270.0 214320.0 202050.0 True False 164330.47387766754 191849.91371011495 202980.99740471545 180481.3035743241 203384.1441261528 186044.1486198347 189192.8007720468 182976.41201354095 161503.70774086588 189154.99601629202 0.868760949161045 1.0142471399147757 1.0730935036325058 0.9541450523399294 1.0752248072191295 0.9835539770982873 1.0001998612595542 0.9673358667078563 0.853816770068053 1.0 17.529209356204706 -0.6995889558864707 4.593471529268402 1.0000000160877403 0.983056603483983 0.002570861716853612 0.06979832373331649 1.261263709635421e-08 3.4850215079451493e-09 0.06510914198284998 0.015346355599943575 0.19971516529712852 0.6995889558864707 -0.016943412603757202 LVGSQEELASWGHEYVR ddPTM_BT-474_Trastuzumab_2h_R1 4 LVGSQEELASWGHEYVR 17 0 Q13200;Q13200-3;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;;; 180.62 8.494100000000002e-10 2462000000.0 363608.0 595910.0 513585.0 566000.0 536254.0 528964.0 476738.0 460904.0 472979.0 552910.0 False True 361650.37492864684 615744.5041147979 585893.3038391545 637655.5419667126 604542.768273521 492397.96372731985 453676.36162398255 495298.9969030892 356419.66304389294 517622.81042993366 0.6986754981455758 1.1895621516435204 1.1318923587477066 1.2318922758390045 1.1679214209501168 0.9512678997247779 0.8764613005504188 0.9568724308955735 0.6885702404572422 1.0 18.98154166937356 2.5585322582526353 4.423837557339841 0.8876739801704646 1.0999012482007198 0.26894389990508216 0.15799111395167129 0.2922884900395844 10.372316852387867 0.05216926121010673 0.04817385554783213 361.85306722901487 -2.5585322582526353 0.21222726803025516 LVGYLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LVGYLDR 7 0 P07602;C9JIZ6;P07602-2;P07602-3;Q5BJH1 P07602 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D 0 ;;;;; 170.44 0.0022673000000000003 2511690000.0 2031140.0 2398780.0 2429030.0 1886240.0 1511970.0 1717770.0 1925690.0 1627695.0 2592110.0 1724440.0 False True 2020204.5679208662 2478621.9422068703 2771016.3104927577 2125037.790599454 1704510.4173516976 1599024.6030956332 1832537.0178498207 1749161.866167737 1953319.222994476 1614384.762832639 1.2513773757230995 1.5353353173736721 1.7164534591064058 1.316314325756402 1.0558266260893852 0.99048544058973 1.1351302737981783 1.0834851185653007 1.2099465183052982 1.0 20.622553032249808 3.4286653387948682 4.154659618971336 1.0849213424939472 1.5078384116983266 0.7109831440864124 0.12131771008487457 0.11006225534276524 4.0353405108631115 0.03421295230267348 0.04840018757035868 2683.275954163842 -3.4286653387948682 0.4229170692043793 LVHDS(ph)LEDLQMTR ddPTM_BT-474_Trastuzumab_2h_R1 4 LVHDSLEDLQMTR 13 0 A0A087WYY3;A0A2R8Y635;A0A2R8YDN7;Q9H7F0-2;Q9H7F0 A0A087WYY3 ATP13A3 Probable cation-transporting ATPase 13A3 1 LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR 273.43 2.4807e-32 599204000.0 420086.0 500359.0 548717.0 499918.0 608613.0 651225.0 535882.0 407912.0 512200.0 549618.0 True False 417824.303651942 517013.1468415968 625971.5840663356 563207.5675422527 686116.2580181265 606207.3485687575 509959.3403919618 438352.46477516525 385975.1731283663 514540.9086883568 0.8120332059059013 1.0048047455731792 1.216563296516175 1.0945826814391777 1.33345327151371 1.1781518987753032 0.9910958133376137 0.8519292778733425 0.7501350555629791 1.0 18.972926257903207 1.9500123354887196 3.3077338726901013 0.8551483975734476 1.1159958960254206 0.36251373265586173 0.1412897992570482 0.2645505393786415 5.434724176361332 0.07295613007348857 0.0415087250396339 89.12762531503704 -1.9500123354887196 0.26084749845197297 LVHGDIFRPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVHGDIFRPPR 11 1 Q99805 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 0 ; 194.5 2.916e-07 1212710000.0 578550.0 755450.0 747760.0 625210.0 822850.0 733440.0 591480.0 588860.0 668330.0 719360.0 False True 575435.1510829473 780594.6965708308 853038.1083535654 704361.5218957739 927635.0700859434 682739.0191320493 562867.8527269763 632803.7233704923 503629.02666318056 673449.8289249197 0.8544588273213449 1.159098514906381 1.2666691291841836 1.0459005135099684 1.377437531711604 1.0137934405922393 0.835797751445755 0.9396449389269073 0.747834515701285 1.0 19.361210945354813 2.4785409748878076 9.099584304663114 0.8863215594174974 1.1487080805019703 0.42697880745350236 0.14177302373674439 0.09541069000621531 115.90880489891595 0.04642245426735589 0.04044453552935861 300.982312676909 -2.4785409748878076 0.2623865210844729 LVHLQTLVLNGNPLLHAQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVHLQTLVLNGNPLLHAQLR 20 0 Q13045-3;Q13045;J3KS54;J3QQQ2;J3KT47;J3QQU5;J3QLR6 Q13045-3 FLII Protein flightless-1 homolog 0 ; 267.39 4.2113999999999995e-37 332730000.0 192791.0 234370.0 225500.0 247300.0 217230.0 224810.0 250370.0 215670.0 295070.0 247540.0 False True 191753.03467709382 242170.86377034298 257248.439918863 278608.1546437598 244892.95287691505 209269.41384581712 238258.64659371966 231764.39055006942 222353.95223542975 231741.78527034374 0.8274426403222875 1.0450030126756509 1.1100649786518382 1.202235299597537 1.0567492288506775 0.9030284012082199 1.0281212182592514 1.0000975451177236 0.9594901151557006 1.0 17.822158673871062 2.9482150720335443 24.856976803527818 0.9837207156648357 1.060518191640119 0.11633952375431256 0.09311635091489703 686.1155932866317 329337.6521099588 0.029586918363915284 0.03138194817454214 887.5954597124875 -2.9482150720335443 0.0767974759752833 LVHLWSSDSHQPLWSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVHLWSSDSHQPLWSR 16 0 O95834;O95834-2;O95834-3;K7EIK7;A0A0C4DGQ7;C9JRL6;K7ELI8 O95834 EML2 Echinoderm microtubule-associated protein-like 2 0 ; 220.21 6.767600000000001e-15 775040000.0 152633.0 254280.0 271730.0 262740.0 230960.0 221780.0 246820.0 199823.0 242470.0 243350.0 False True 151811.24088712057 262743.5560844942 309987.22208050004 296002.8570606608 260371.38699282898 206448.87061396422 234880.37365603657 214734.80694063412 182716.51743154056 227819.19465758334 0.6663672089408261 1.1532985904870872 1.3606721002873214 1.2992884884241593 1.1428860829052276 0.9061961215527115 1.0309946622762245 0.942566789700862 0.8020242442967417 1.0 17.79752977929975 2.746357224920509 22.51668213542704 0.9415696985818458 1.148933188989275 0.20431086372206586 0.18234631391705472 238.68815821191623 689331.7942494038 0.05816117391368478 0.06050022685373497 557.644245470883 -2.746357224920509 0.2073634904074293 LVIASTLYEDGTLDDGEYNPTDDRPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 LVIASTLYEDGTLDDGEYNPTDDRPSR 27 1 C9JLU1;P52434;P52434-3;P52434-4 C9JLU1 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 0 ;;;;; 267.81 1.1267e-53 1167988000.0 169262.5 197467.0 196597.0 218144.0 182866.0 199235.0 196869.0 178206.0 221609.0 224573.0 False True 168351.20950683166 204039.5697236778 224276.1487482427 245761.00803319193 206152.90116830025 185462.353398743 187345.6943573869 191504.63663173217 166996.43135846205 210240.5588733816 0.8007551464331009 0.9705052670001777 1.0667596678303832 1.168951458986573 0.9805572353546531 0.8821435520937642 0.891101580785926 0.9108834073594085 0.7943112035724584 1.0 17.6816814902686 2.8238477717007155 4.853245596823932 0.8917241989374916 1.0114525246839026 0.20983121107100255 0.09795320882089714 0.3344451991600866 13.681492109743333 0.03157155036758629 0.03346115404917853 666.5730819882159 -2.8238477717007155 0.11972832574641101 LVIEEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 LVIEEAER 8 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 103.56 0.011047 1436380000.0 501918.0 678236.0 510537.0 644854.0 705218.0 913022.0 914593.0 751358.0 1085610.0 966753.0 False True 499215.72925633244 700810.6752576802 582416.171932846 726492.450281629 795023.332145431 849906.9381626076 870350.6425054515 807428.1492786156 818075.9619287112 905053.9958611161 0.5515866805066721 0.7743302371599299 0.6435153864811176 0.8027061960987264 0.8784264096740481 0.939067660105695 0.9616560409496385 0.8921325721681234 0.9038974090715445 1.0 19.787644340927965 3.471194008725498 1.3855937462154206 0.9332488640896845 0.6511624949715228 0.8170342749233794 0.058290527332978154 0.17049345482366188 0.6635335072181819 0.018303390868101413 0.034498909078891464 2959.3341698059003 -3.471194008725498 -0.28208636911816176 LVIGDHK ddPTM_BT-474_Trastuzumab_2h_R1 5 LVIGDHK 7 0 E9PM92;O00193;E9PRZ9 E9PM92 C11orf58;SMAP Small acidic protein 0 ;;;; 158.12 0.0014325999999999998 9102610000.0 8884280.0 9461660.0 7990440.0 8230720.0 8189920.0 9340910.0 9429370.0 8806750.0 12073530.0 9256060.0 False True 8836448.0236163 9776585.633405752 9115424.497850461 9272728.308085274 9232857.766541004 8695194.877836982 8973235.349408554 9463954.404770367 9098170.308513341 8665330.32628834 1.019747394604085 1.1282415401691215 1.0519419519642146 1.070095190711224 1.0654940341432726 1.0034464412115993 1.0355329816090346 1.0921631430551713 1.0499507769382868 1.0 23.04682331594154 2.97458927580226 24.72120513062401 1.0447963918498748 1.0703656950515978 0.1388707065998961 0.035105349999307485 1519.280460568636 1478057.6541443905 0.01077299501904117 0.01147497275711706 943.1684740848727 -2.97458927580226 0.025569303201723015 LVIGSLPAHLS(ph)PHMFGGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVIGSLPAHLSPHMFGGFK 19 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 LVIGSLPAHLS(1)PHMFGGFK 142.23 2.6275e-07 231590000.0 97446.0 117340.0 117510.0 117100.0 119020.0 135830.0 135750.0 77074.0 173880.0 126150.0 True False 96921.36156326845 121245.59096647204 134054.38658477002 131924.84799346645 134176.4915131907 126440.39180942737 129183.25388464026 82825.65325384185 131029.6038726288 118098.99899755146 0.8206789421244621 1.0266436802651122 1.1351018020698835 1.1170699930843753 1.136135722166219 1.0706305123894306 1.093855620972017 0.7013239227841302 1.1094895383096806 1.0 16.84963721099755 LVIIEGDLER ddPTM_BT-474_Trastuzumab_2h_R1 8 LVIIEGDLER 10 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;;;;;;; 218.73 1.5458000000000002e-08 1240171000.0 1036703.0 1261227.0 1152098.0 1120781.0 1039846.0 1183148.0 1143451.0 1013083.0 1233757.0 1189322.0 False True 1031121.506236531 1303206.1782671774 1314303.3841846671 1262671.7596837357 1172264.224449883 1101359.7635908152 1088137.906722991 1088684.397791237 929714.1188468056 1113418.4517302066 0.9260862388567482 1.1704549859417621 1.1804217741697145 1.1340496088614263 1.0528514437929715 0.9891696710067517 0.9772946595523627 0.9777854822681142 0.8350087223739359 1.0 20.086564466387717 2.7294507190557686 1.6790278616013774 0.9479567117351888 1.1126078904001362 0.44816677149941275 0.078006936822699 0.3305871345089736 1.860278483894484 0.030759960200902773 0.02971028740211439 536.3530060979868 -2.7294507190557686 0.16465117866494738 LVIIESDLER ddPTM_BT-474_Trastuzumab_2h_R1 3 LVIIESDLER 10 0 H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5 H7BYY1;P09493-3 TPM1 Tropomyosin alpha-1 chain 0 ;; 206.38 3.5232e-07 127612000.0 153535.0 173576.0 174615.0 169707.0 146126.0 168604.0 171928.0 154282.0 182332.0 169419.0 False True 152708.3846193422 179353.3722310923 199199.274219212 191191.88879954943 164734.2799433416 156948.80233112467 163611.18581125923 165795.30626812184 137398.72172362613 158606.53437309654 0.9628126938334086 1.1308069553376163 1.2559335906717912 1.205447742460604 1.03863488723504 0.9895481478835397 1.031553879277067 1.0453245632245822 0.8662866398708239 1.0 17.275092683772947 3.0801896601032412 5.50402754458093 0.9991357377734759 1.1458665175243206 0.4179802417093209 0.08392996197481294 0.21454307603301342 11.027132473157112 0.025504369869570706 0.030606309943683668 1202.7895884082916 -3.0801896601032412 0.1467307797508447 LVILEGELER ddPTM_BT-474_Trastuzumab_2h_R1 7 LVILEGELER 10 0 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain 0 ;;;;;; 221.94 1.1953e-08 483714600.0 346379.0 394129.0 340573.0 346298.0 331439.0 373677.0 356688.0 324641.0 395873.0 370017.0 False True 344514.1339503243 407247.34550898825 388522.7180864166 390139.29129326565 373645.79205713636 347845.58853104105 339433.63875951845 348867.35991359595 298315.40357642685 346402.19827250845 0.9945495024812203 1.1756488484770353 1.1215942624612696 1.1262610146207848 1.0786472889620518 1.0041668045576233 0.9798830389999201 1.0071164722781238 0.861182189559165 1.0 18.402088559890547 2.6611204483318502 1.639220935028656 0.9640267919981658 1.112005684613061 0.5733149998344671 0.05670316678358205 0.2646042977835463 1.4247426708694084 0.022664300681784082 0.02066016729802676 458.26896656755855 -2.6611204483318502 0.14797889261489527 LVINGNPITIFQER ddPTM_BT-474_Trastuzumab_2h_R1 2 LVINGNPITIFQER 14 0 P04406;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 239.48 5.3822e-17 3573100000.0 416000.0 433930.0 442930.0 404730.0 384510.0 426680.0 414860.0 391080.0 460320.0 452890.0 False True 413760.30222194514 448373.0977337755 505290.6939834236 455968.7765020979 433475.06933067454 397184.6158966828 394791.6368808979 420264.3754640015 346880.30397198343 423986.17246136395 0.9758815949584991 1.0575182089803503 1.191762200757782 1.0754331299416335 1.022380203614247 0.9367867201680417 0.9311427176717033 0.9912218906202617 0.8181406057613663 1.0 18.693657689115113 2.9441506092535996 2.6603114332383915 0.9388468351841747 1.0817402143193 0.4911002730361732 0.067201371174605 0.24244674311368555 3.4013933972461916 0.02201782950409501 0.024740132212633957 879.3274064598052 -2.9441506092535996 0.14289337913512534 LVINGNPITIFQERDPS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 2 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 LVINGNPITIFQERDPS(1)K;LVINGNPITIFQERDPS(1)K 196.78 1.16e-15 1722100000.0 2270100.0 1778220.0 1486450.0 1315760.0 1358980.0 2024320.0 1966340.0 1920620.0 2813200.0 2038380.0 True False 2257878.03383182 1837406.9777433095 1695729.2395449856 1482335.0810920885 1532038.0476944693 1884383.523136714 1871220.6220517396 2063946.417110746 2119924.554948694 1908288.8432550817 1.1831951131572007 0.9628557983963975 0.888612457982241 0.7767875845061177 0.8028334144013445 0.9874729026463358 0.9805751517468851 1.0815691892796218 1.1109033951760745 1.0 20.86384812703698 2.0752615333246145 2.0866265590691038 1.0702925247694224 0.9171182817298797 0.22057684897637841 0.10829286310804029 0.47044111866932864 3.9269573901727477 0.06210729994347643 0.03507075361734721 118.92181622757565 -2.0752615333246145 -0.15317424303954263 LVINGNPITIFQERDPS(ph)KIK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVINGNPITIFQERDPSKIK 20 2 P04406;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 LVINGNPITIFQERDPS(1)KIK;LVINGNPITIFQERDPS(1)KIK 209.41 2.4627e-22 9571300000.0 5239300.0 3525500.0 3322800.0 3044700.0 2848500.0 4911000.0 5134000.0 4436200.0 7150500.0 4522000.0 True False 5211092.190940947 3642844.1362902494 3790621.3577046497 3430158.7078198735 3211239.590617741 4571514.129250512 4885648.806215421 4767251.770567155 5388355.086791065 4233402.0885210205 1.2309466670012184 0.8605003871869189 0.8954078253003696 0.8102605507567632 0.7585482133447944 1.0798676888373755 1.154071525467185 1.1261041759991761 1.2728191119387713 1.0 22.013386091660138 2.545832200021584 6.306469916093106 1.1433480059125092 0.902175875089845 0.4006304482377827 0.1329559377992248 0.22247144689950718 16.32901161757991 0.04320047941088094 0.04036091891750486 351.42463304786645 -2.545832200021584 -0.2411721308226642 LVINGNPITIFQERDPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 305.98 3.4408e-50 40152000000.0 11115100.0 11302400.0 10612600.0 9554900.0 11044700.0 12619100.0 13117500.0 11999700.0 16044200.0 13111700.0 False True 11055257.536603697 11678593.551554907 12106761.833627164 10764549.360314036 12451177.07793427 11746771.31916619 12482956.411283772 12895178.547241954 12090321.891265417 12274900.080508856 0.9006393098187566 0.9514206612646228 0.9863022716454796 0.8769561698841781 1.0143607684192333 0.9569749034306786 1.0169497372206953 1.050532261987047 0.9849629579032966 1.0 23.549207945049584 2.718382225421843 1.2854774470895909 1.0198711771138131 0.9366428339030514 0.41736692146872667 0.03882906493050055 0.3941125334782895 1.3349455844148612 0.0174560110422431 0.016135558411254552 522.8561556913538 -2.718382225421843 -0.08322834321076178 LVKPGNQNTQVTEAWNK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVKPGNQNTQVTEAWNK 17 1 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3;H0YIN7 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 213.55 5.1885e-13 1461700000.0 1592300.0 1256900.0 1370900.0 1349800.0 1309100.0 1819400.0 1727600.0 1463000.0 1956400.0 1873600.0 False True 1583727.23372116 1298735.1566879044 1563910.8039235906 1520684.5416018895 1475806.125356391 1693629.1604069192 1644029.3879271087 1572176.4889634696 1474271.4344168995 1754025.2439303375 0.9029101714479425 0.740431280098204 0.8916124835348735 0.866968446927486 0.8413824889141698 0.9655671526208565 0.937289468105513 0.896324892930623 0.8405075351785822 1.0 20.742238080522462 2.7604937524623083 24.279848628739277 0.9203229768628055 0.8460514792348759 0.32097608633885344 0.057055588208743784 709.8124520028674 785756.2563194147 0.017022931510070474 0.01803966086699649 576.0945310997683 -2.7604937524623083 -0.07427149762792962 LVLAES(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 LVLAESPQPK 10 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 LVLAES(1)PQPK;LVLAES(1)PQPK;LVLAES(1)PQPK;LVLAES(1)PQPK 134.56 0.00017557 901870000.0 1303500.0 1207900.0 1022450.0 1008660.0 1024510.0 1417700.0 1336090.0 1293350.0 2021820.0 1468360.0 True False 1296482.1008324646 1248104.221309032 1166402.0727052856 1136356.2525797603 1154975.2757534774 1319697.735906833 1271458.2223405477 1389866.3444982255 1523569.5519999892 1374648.007673757 0.9431375112720177 0.9079445896998257 0.8485096302428178 0.8266525294011483 0.8401971044994857 0.9600259328495931 0.9249336668316773 1.011070715368236 1.1083343106707326 1.0 20.39063081880232 1.8967959498066642 1.3826172791202727 1.0547163936477197 0.8766490336524781 0.6877432591041304 0.04666775697791817 0.23959443218223844 0.8525854654745486 0.03587570761313975 0.015613851816611382 78.84895643245922 -1.8967959498066642 -0.1780673599952416 LVLEVAQHLGESTVR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVLEVAQHLGESTVR 15 0 P06576 P06576 ATP5B ATP synthase subunit beta, mitochondrial 0 ;; 228.11 6.403199999999999e-13 2236963000.0 1209832.0 1629315.0 1809259.0 1531443.0 2038054.0 3038302.0 1524240.0 1407902.0 1884381.0 1880408.0 False True 1203318.398936972 1683545.7648332848 2063986.9408388599 1725323.5267776132 2297588.0964075318 2828271.334133596 1450506.6880377464 1512966.7964214953 1420000.5519617435 1760398.7515417174 0.6835487686429753 0.9563434212611622 1.1724542175636439 0.9800754092029512 1.3051520823877862 1.6066083503278221 0.823964847036744 0.8594455063640969 0.8066357413160735 1.0 20.747470823023843 LVLIGSNHSLPFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVLIGSNHSLPFLK 14 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 0 97.551 0.0036315 0.0 173320.0 292820.0 304650.0 295320.0 300440.0 327170.0 322360.0 327330.0 332360.0 320610.0 False True 172386.86437766228 302566.33668657194 347542.0719347302 332707.4817201582 338699.25315260474 304553.50797533937 306766.2152652133 351757.02674806083 250454.33139582968 300148.395311969 0.5743387839821246 1.0080558197623872 1.157900816272901 1.1084766299494884 1.1284393268222097 1.0146764491570637 1.022048493533893 1.1719437193140771 0.8344350171704628 1.0 18.19531642931932 4.729121082354436 3.925380702064102 1.0684566933201136 0.5322996894919388 0.6964859189960528 0.09415523123537545 0.11576675197059474 3.6542928207624557 0.021579652354706998 0.17531177281680402 53594.605974629936 -4.729121082354436 -0.5361570038281748 LVLPAPQIS(ph)DAELQEVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVLPAPQISDAELQEVVK 18 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 LVLPAPQIS(1)DAELQEVVK;LVLPAPQIS(1)DAELQEVVK 202.6 1.3372999999999999e-15 68943000.0 68931.0 56000.0 57070.0 59721.0 62263.0 77495.0 62648.0 62262.0 78122.0 66264.0 True False 68559.88315495399 57863.92614728512 65104.95993866748 67281.67247666801 70191.82398828592 72137.95305360803 59617.47690139924 66908.30660002971 58869.87988116796 62034.97478853536 1.1051811238524836 0.932762950972923 1.049487972882992 1.0845764458842384 1.131487910288601 1.1628593918110175 0.9610300818953038 1.0785578107850702 0.9489788636465709 1.0 15.920794203555747 1.4449957569322645 1.627430253886932 0.9810456439247139 1.0659952705940532 0.1763156708093223 0.06947277137132073 0.6763780142070843 3.3652287755760537 0.0630116387900515 0.02022875248662693 27.86093948290619 -1.4449957569322645 0.08494962666933925 LVLVLGDLHIPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVLVLGDLHIPHR 13 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 ; 129.34 8.9511e-05 509850000.0 235230.0 284250.0 222090.0 269910.0 252850.0 252350.0 231910.0 123813.0 278930.0 204160.0 False True 233963.54781651014 293711.0894172465 253358.34155911478 304080.57832550403 285048.9487406336 234905.63846800395 220691.62731776774 133052.55476967472 210191.43897051035 191130.33400983008 1.2241047399858418 1.5367057821504178 1.3255789190745841 1.5909592786557092 1.491385186016434 1.22903378830449 1.154665628881375 0.6961352077312419 1.0997283087450678 1.0 17.544197238898754 2.2343119975734367 2.120461167532095 0.9063080332325687 1.4361548927749412 0.6783244749685213 0.14594736384641313 0.1585364020454705 1.444207563688708 0.06604958995814006 0.04390833240931695 171.51890584789243 -2.2343119975734367 0.5298468595423725 LVNACLAEELPHIHAFEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVNACLAEELPHIHAFEQK 19 0 Q9H3K6;A0A087WZT3 Q9H3K6 BOLA2 BolA-like protein 2 0 ; 227.25 7.5861e-20 973340000.0 678320.0 726160.0 621380.0 613410.0 637710.0 658860.0 669820.0 52796.0 891260.0 361480.0 False True 674668.0004884364 750329.7966270102 708864.9028682179 691067.6431056556 718918.5884966968 613314.5589896139 637418.2476391143 56735.90561265583 671620.9152721361 338410.03692140215 1.993640633788685 2.2172208704355865 2.0946923126658215 2.0421014973210156 2.1244009044083705 1.8123415149535298 1.8835677967410838 0.16765432292965088 1.9846365119132807 1.0 18.36841283249868 1.918822541559501 9.303530205196331 0.9711546396948415 2.04298943685046 0.5297472855769291 0.42059645430748055 0.2865440560387693 31.16750107483576 0.1660126707955824 0.10513214315549269 82.95117488386765 -1.918822541559501 1.0718347971556188 LVNHFVEEFK ddPTM_BT-474_Trastuzumab_2h_R1 3 LVNHFVEEFK 10 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ;; 164.33 6.1892e-06 8966450000.0 10618950.0 9515150.0 8818560.0 7533130.0 7301820.0 8855290.0 8823470.0 8729510.0 15157750.0 9732850.0 False True 10561778.753076268 9831856.015720362 10060136.595702402 8486823.48561079 8231663.495722112 8243144.645410467 8396645.047171332 9380950.363753604 11422325.615943953 9111691.180287883 1.1591458209125312 1.0790374499292157 1.1040910404718691 0.931421326479005 0.9034177446147855 0.9046777905778437 0.921524323095643 1.0295509558146827 1.2535900734492482 1.0 23.119287420384985 3.763850562315706 17.62106588136077 0.9844927926738051 1.11058803551789 0.2398235495367469 0.09889629886724581 29.268419662050576 20389.599929628042 0.02675664131725999 0.04811028514405378 5805.646149370828 -3.763850562315706 0.12609524284408502 LVNHFVEEFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVNHFVEEFKR 11 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ; 250.94 4.2538000000000006e-17 5381000000.0 5305700.0 5305800.0 5183400.0 4285700.0 3952900.0 4708400.0 4862600.0 4741900.0 8206000.0 5320500.0 False True 5277134.700718683 5482400.345576166 5913177.665079534 4828269.180577279 4456278.384326087 4382919.390381415 4627377.461064109 5095764.656880305 6183741.254766454 4980941.134890783 1.0594653817032904 1.100675594652732 1.1871607202218406 0.9693487736194957 0.8946659403602448 0.879938002013252 0.929016692979965 1.023052575583598 1.2414804928029017 1.0 22.247986930564956 3.7209847999770718 24.236831968838644 0.9822410615648101 1.1142580694022142 0.2451848279625347 0.09940922033617357 742.1420153289235 1023404.6904730079 0.0279995101315959 0.0434973202403802 5259.988564524583 -3.7209847999770718 0.1320170078374041 LVNLQHLDLLNNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVNLQHLDLLNNK 13 0 Q96AG4 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 0 ; 213.99 1.5104e-09 2667800000.0 2129800.0 3246400.0 3397100.0 2400200.0 3132000.0 4010100.0 2983800.0 2429800.0 3961300.0 3045600.0 False True 2118333.3934430266 3354454.4615097567 3875382.151877472 2704065.0739019513 3530841.6351815923 3732891.225760024 2839462.194777089 2611124.0142743997 2985090.6937005054 2851227.200530657 0.7429549609546277 1.176494970616667 1.3591979450659717 0.9483863907438465 1.2383585687329473 1.3092226480812459 0.9958737045748658 0.915789528729394 1.0469494304575007 1.0 21.44315157458351 2.0317550151862163 24.917023048726374 0.9726250079776575 1.1396409426331349 0.13471633098804525 0.1707361925802298 320.8152719916124 251730.9005915456 0.06346798237617451 0.04687383212917058 107.58581525836281 -2.0317550151862163 0.16701593465547737 LVPDSDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVPDSDVR 8 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 114.6 0.0061059 476150000.0 656790.0 929520.0 813720.0 850950.0 856690.0 885860.0 775430.0 755830.0 895080.0 755180.0 False True 653253.9156162285 960458.5112932939 928284.7030189679 958680.18275013 965784.3935005491 824622.5832901364 737919.4884697365 812233.8726269733 674499.5274575141 706983.7658578744 0.9240012955934729 1.3585297961231768 1.3130212429878931 1.3560144221796095 1.3660630415305768 1.1663953588658655 1.0437573309400165 1.1488720276927227 0.9540523559816921 1.0 19.431317561911037 2.46108926968847 4.1000115199306615 1.0611820560529475 1.2767939880538135 0.3937176918283448 0.13052542435409728 0.22621159091312673 8.811062349603777 0.045509374258287716 0.03911900769236735 289.12741257334454 -2.46108926968847 0.21561193200086604 LVPGWTKPITIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVPGWTKPITIGR 13 1 P48735;P48735-2 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 101.43 0.0012438 0.0 1902800.0 1909000.0 2010500.0 1608800.0 1867500.0 2969000.0 2133100.0 1882400.0 2834300.0 2282100.0 False True 1892555.5362209536 1972539.9109851308 2293560.924420729 1812473.915046018 2105315.0554602877 2763760.018274235 2029913.803766675 2022874.2466335185 2135824.7426742082 2136454.4241958926 0.8858394144931332 0.9232773180862703 1.0735360878498343 0.8483559932378091 0.9854247446690444 1.2936199279394618 0.9501320415625918 0.9468370697375756 0.9997052679829941 1.0 21.02678711045371 2.999911348504057 24.999999996744172 1.0321109122683807 0.9389762790542975 0.17614827821769097 0.10669991907359955 6.704086805182033 1891598.2093914603 0.03246630192277751 0.03844020065584577 999.7958932195941 -2.999911348504057 -0.09313463321408322 LVPLLDTGDIIIDGGNSEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVPLLDTGDIIIDGGNSEYR 20 0 P52209-2;P52209;K7EM49;K7EMN2 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 275.83 3.6971999999999997e-44 145950000.0 52542.0 79250.0 75742.0 82341.0 77390.0 80152.0 80937.0 81012.0 79495.0 97727.0 False True 52259.119709965 81887.78834236326 86405.81523873407 92765.36215738712 87245.15777353242 74611.28089751326 77021.76810063464 87057.52681060068 59904.52242842538 91489.97919170579 0.5712004765075153 0.8950465293119988 0.9444292806940255 1.0139401383293456 0.9536034278761953 0.8155131475237816 0.8418601554083336 0.9515525916579622 0.6547659422121297 1.0 16.48132611461682 4.738273404227746 7.371311899853448 0.8996842146544818 0.5673389627910456 0.485221807487337 0.10056410960430326 0.08402582703956768 41.86459541039707 0.02333507161961332 0.13974777361609497 54736.04378266364 -4.738273404227746 -0.3323452518634362 LVPLLDTGDIIIDGGNSEYRDTTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVPLLDTGDIIIDGGNSEYRDTTR 24 1 P52209-2;P52209;K7EM49;K7EMN2 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ; 208.39 5.8801e-25 231970000.0 28747.0 52172.0 46971.0 55567.0 43706.0 41045.0 49441.0 41312.0 63317.0 59566.0 False True 28592.229346091957 53908.51348136 53584.10852074911 62601.77650258711 49271.70003424225 38207.65575953723 47049.34994703871 44394.9112180854 47713.37375433189 55764.44688298172 0.5127322325296438 0.9667183392759856 0.9609009237228172 1.1226109107466467 0.8835683448566413 0.6851615661088445 0.8437158902655107 0.7961149746763454 0.8556235454904715 1.0 15.76705799169229 2.98640829620466 24.456174994811935 0.8183219521907219 0.9139178413033953 0.012696311653072723 0.16210058754425105 1405.4611842664583 2528916.694582385 0.04818126128209437 0.053184486921854124 969.1885979061352 -2.98640829620466 0.09559588911267336 LVPRPGSGSSSGSSNSGSQPGSHPGSQS(ph)GSGER ddPTM_BT-474_Trastuzumab_2h_R1 1 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6;A0A0D9SG62;G5E948;E7ENQ1;G3XAA2;C9J840;E7EX83;O95819-4;O95819-5 O95819-3 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 LVPRPGSGSSSGSSNSGSQPGSHPGS(0.049)QS(0.78)GS(0.17)GER 131.38 3.6176e-08 151580000.0 6981.4 14799.0 16580.0 16879.0 18486.0 19007.0 17707.0 15281.0 16501.0 17990.0 True False 6943.812918106457 15291.575768815577 18914.31988405654 19015.87966935715 20840.08252489364 17693.090827665354 16850.444762691175 16421.345815345736 12434.549652071808 16841.862797986112 0.41229482756128216 0.9079503824626862 1.1230539110150122 1.1290841100802103 1.2373977139503607 1.0505423918891579 1.0005095614901987 0.9750314446991778 0.7383120146043872 1.0 14.039764096385367 4.711873433705175 3.0932087831622095 1.036874641603714 0.33470000587213966 0.691071113508086 0.12373059928688206 0.19085239458347464 2.8597653156421963 0.03219878761816424 0.31606726646192584 51507.85135484974 -4.711873433705175 -0.7021746357315743 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGS(ph)GER ddPTM_BT-474_Trastuzumab_2h_R1 1 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6;A0A0D9SG62;G5E948;E7ENQ1;G3XAA2;C9J840;E7EX83;O95819-4;O95819-5 O95819-3 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 LVPRPGSGSSSGSSNSGSQPGSHPGS(0.051)QS(0.039)GS(0.91)GER 160.8 3.2695e-14 133610000.0 27199.0 47840.0 56314.0 59557.0 53226.0 60566.0 59120.0 50078.0 49801.0 59380.0 True False 27052.563606092986 49432.32548010928 64242.521709937275 67096.91009348325 60004.01560478143 56379.21497702845 56260.13973966804 53815.07465093143 37528.210849210845 55590.31756222432 0.4866416453874731 0.8892254559398375 1.155642286771041 1.2069891491153864 1.0793968848552933 1.0141912737577203 1.0120492597779094 0.9680656094596726 0.6750853834789505 1.0 15.76254600312054 4.686572558792084 3.281177355139975 1.0192954163476298 0.4418122515701717 0.5790914142691828 0.13450604664900115 0.20193150995279308 3.581123662649994 0.034316183936846434 0.2725261803217575 48592.87096226529 -4.686572558792084 -0.5774831647774581 LVPS(ph)QEETK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVPSQEETK 9 0 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 LVPS(1)QEETK;LVPS(1)QEETK 136.81 0.00019132 729950000.0 1029960.0 776270.0 725620.0 676030.0 741920.0 995820.0 939550.0 896090.0 1235840.0 1049060.0 True False 1024414.8097993125 802107.6776848751 827780.9887978949 761615.3286850823 836399.1142956346 926981.3073081342 894100.377070452 962960.7860528212 931283.7914075764 982108.0926545473 1.0430774549779078 0.816720362742203 0.8428613866325849 0.7754903298133982 0.8516365159306702 0.9438689226178653 0.9103889722095471 0.9805038704548573 0.9482497887685687 1.0 19.905522293431538 2.6898255796015134 4.466924248713719 0.9550283567727484 0.8567244185912295 0.29631027864052584 0.06921612264594657 0.2659668853918224 11.7251123352383 0.022622468835949813 0.0216930402700643 489.58215496649353 -2.6898255796015134 -0.09830393818151895 LVPTGPTHREPS(ph)PVRYDNLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVPTGPTHREPSPVRYDNLSR 21 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 LVPTGPTHREPS(1)PVRYDNLSR 179.64 2.9606e-17 372810000.0 207830.0 148600.0 154020.0 164500.0 177030.0 187140.0 244630.0 199280.0 313120.0 199900.0 True False 206711.06637208394 153546.06116940323 175704.67723416083 185325.6831334352 199573.72116098242 174203.45228017526 232796.31232264903 214151.2855233359 235955.7715930384 187142.21085699974 1.1045667646303339 0.8204779694877699 0.9388831970592747 0.990293329787834 1.0664281470602157 0.9308613566251426 1.2439540564182754 1.1443237981567638 1.2608367215098168 1.0 17.513775476765876 2.243726636208952 24.99935348985298 1.173580739736239 0.971391572150448 0.46433925736381076 0.09805690492787426 100.52806109296445 486476.0987602071 0.03295775838071399 0.026798631175181154 175.27768807225678 -2.243726636208952 -0.20218916758579097 LVPVS(ph)PLPPK ddPTM_BT-474_Trastuzumab_2h_R1 6 LVPVSPLPPK 10 0 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase 1 LVPVS(1)PLPPK;LVPVS(1)PLPPK;LVPVS(1)PLPPK;LVPVS(1)PLPPK;LVPVS(1)PLPPK;LVPVS(1)PLPPK 134.13 0.00018757 879243000.0 2882970.0 2818700.0 2553860.0 2458900.0 2544610.0 2810850.0 2763950.0 2728500.0 3588030.0 2776030.0 True False 2867448.409848079 2912518.7255598707 2913421.2894509407 2770196.4878833042 2868651.000414891 2616542.5555291832 2630247.179185646 2932114.525042262 2703808.0836387593 2598861.388721144 1.1033479593381095 1.1206902908327374 1.1210375828795496 1.0659269862970535 1.1038106968169266 1.0068034281800384 1.012076746609386 1.128230438825022 1.0403817977261411 1.0 21.30944825848736 3.379991871915534 1.5351716771742876 1.0524719458178118 1.1151756453295814 0.3758578932239196 0.038673058986337217 0.5019790035285127 2.426876456308494 0.013374932040155286 0.022136326874271636 2398.7880238275375 -3.379991871915534 0.06270369951176957 LVQAEYWHDPIKEDVYR ddPTM_BT-474_Trastuzumab_2h_R1 4 LVQAEYWHDPIKEDVYR 17 1 A0A2C9F2P4;A0A286YFF7;P50897;Q5T0S4;A0A286YFE3;A0A286YFL8;P50897-2 A0A2C9F2P4 PPT1 Palmitoyl-protein thioesterase 1 0 ;;; 180.14 5.2666e-10 1211410000.0 977120.0 902440.0 790630.0 686810.0 664050.0 845060.0 899730.0 721210.0 1069460.0 805320.0 False True 971859.2944882367 932477.1698635004 901943.8317208457 773760.075579784 748612.8313672846 786642.9912572674 856206.6225976243 775030.3524301739 805905.9130297998 753923.7881308595 1.289068351189298 1.2368321368069755 1.196332899850474 1.0263107329430512 0.9929555787372861 1.0433985551875553 1.1356673394274321 1.0279956205542236 1.0689487793292944 1.0 19.524059167635315 3.9017566110949016 2.9661906828717495 1.0458466787579472 1.2598101373321007 0.8408301363356131 0.040141214704464266 0.10086635588029905 1.7038512223999303 0.011168245431586434 0.02356097154929969 7975.475974525009 -3.9017566110949016 0.21396345857415344 LVQAFQFTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVQAFQFTDK 10 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 ; 180.67 4.5860000000000015e-06 2996400000.0 1712510.0 1829410.0 1648500.0 1404680.0 1373200.0 1831740.0 1729450.0 1566800.0 2376100.0 1862360.0 False True 1703290.0364377478 1890300.8059483038 1880594.470981133 1582512.343974915 1548068.8804059264 1705116.125252157 1645789.8963594225 1683722.5720491905 1790541.9931087708 1743502.590353386 0.976935764742691 1.084197302835761 1.0786301559781222 0.9076627432220561 0.8879074163532802 0.9779831327388802 0.94395609474021 0.965712687417299 1.0269798295773398 1.0 20.733557076878544 3.7455485867284692 24.974319806212982 0.9548735428243172 1.0503487000143035 0.42223951910323654 0.04696253633805796 480.2815631611414 1716474.9246859846 0.012278223659496533 0.021538339096950826 5566.069012148926 -3.7455485867284692 0.09547515718998623 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK 34 2 P32119 P32119 PRDX2 Peroxiredoxin-2 0 194.07 4.573600000000001e-21 5251600000.0 3338300.0 1970900.0 1982300.0 1562000.0 1644200.0 2972200.0 2350500.0 2566800.0 4201800.0 2683400.0 False True 3320326.9637200013 2036500.2150657922 2261390.609539522 1759749.039844532 1853579.1240630802 2766738.8098062244 2236797.33521803 2758347.6499463 3166322.6912353975 2512143.1146256793 1.3217109106519773 0.8106624989672374 0.9001838296447849 0.7004971291640535 0.737847741743516 1.101346015558704 0.890394071179867 1.0980057759795687 1.2604069699696205 1.0 21.260487224986598 1.6553347490652233 4.117910744141161 1.1447007646336196 0.9088407762104366 0.19573702111420588 0.18030839419091094 0.24880370362197418 9.82282588869992 0.1017295659768568 0.04697588830221731 45.22043638698938 -1.6553347490652233 -0.235859988423183 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSK 39 3 P32119 P32119 PRDX2 Peroxiredoxin-2 0 103.85 9.7658e-06 3232100000.0 297760.0 268080.0 263430.0 204990.0 217180.0 369240.0 347380.0 267850.0 556870.0 381880.0 False True 296156.8932442458 277002.88074221765 300518.6542253933 230941.7129819016 244836.58567328792 343715.30789746676 330575.9022795311 287838.327114741 419636.85017570056 357508.0914560831 0.8283921408269054 0.7748156960980145 0.8405925947058167 0.6459761848782404 0.6848420819682736 0.9614196604545643 0.9246669101477935 0.8051239510199997 1.173782804373952 1.0 18.447616369115142 1.7840552053363938 0.8709013777974485 1.044493479825569 0.7668942926334643 0.49346932801135035 0.10568359995723346 0.5258004885451597 0.750123749192709 0.09561447552210384 0.04202833908974341 60.82123092634585 -1.7840552053363938 -0.27759918719210464 LVQDLPEELVHAGWEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVQDLPEELVHAGWEK 16 0 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 0 ; 148.56 9.2028e-07 119477000.0 151193.0 183305.0 156588.0 157640.0 160185.0 206452.0 176541.0 173793.0 224738.0 192301.0 False True 150378.99368712143 189406.1961147876 178634.22931270496 177597.20783680654 180583.61025911992 192180.45917573333 168001.03737788813 186762.31616297227 169354.33123491373 180028.1855428307 0.8353080559785157 1.0520919018523673 0.9922570111678757 0.9864966827350165 1.00308520976654 1.067502061392556 0.9331929712634849 1.0374059795127994 0.9407100933904733 1.0 17.45786326965594 4.749221457880535 24.99974772863605 1.0023785616813465 0.8353079621814979 0.5951039308708745 0.04109731341240902 978.871918448479 2295417.5113305226 0.008931587269406098 0.12913593932656448 56133.414172178884 -4.749221457880535 -0.1670705994998486 LVRLSS(ph)DSFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVRLSSDSFAR 11 1 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 LVRLS(0.426)S(0.566)DS(0.007)FAR 181.72 3.6937e-06 172080000.0 36920.0 58275.0 54170.0 54374.0 60126.0 56704.0 50730.0 39353.0 50534.0 60344.0 True False 36721.22682219764 60214.648147018575 61796.66514591938 61257.7428249082 67782.68970527715 52784.185946858306 48275.99609258053 42289.72069048494 38080.57282090762 56492.794256902365 0.6500161180770588 1.065881922448215 1.0938857947953067 1.0843461299920325 1.199846645875467 0.9343525424998617 0.8545513941662056 0.7485861028252806 0.6740784080839635 1.0 15.785779240833065 2.274474219701276 2.824722668447535 0.786852704696452 1.0309024347053495 0.2554419378158007 0.15659950165550804 0.309014420179533 5.072655219117676 0.06318929380544888 0.047068451688371496 188.13700222739058 -2.274474219701276 0.24404973000889751 LVS(ph)PETEASEESLQFNLEKPATGER ddPTM_BT-474_Trastuzumab_2h_R1 5 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 LVS(0.999)PET(0.001)EASEESLQFNLEKPATGER;LVS(0.92)PET(0.08)EASEESLQFNLEKPATGER;LVS(1)PETEASEESLQFNLEKPATGER;LVS(0.984)PET(0.016)EASEESLQFNLEKPATGER;LVS(0.999)PET(0.001)EASEESLQFNLEKPATGER 209.39 1.4061e-25 1071773000.0 536469.0 529985.0 488020.0 477520.0 477705.0 574127.0 537082.0 542513.0 630531.0 584861.0 True False 533580.7105113092 547625.2303423014 556728.9740541178 537973.9830387711 538537.9001706332 534438.9518395873 511101.2918075175 582998.074885194 475145.0837325303 547534.6702553063 0.9745149293696953 1.0001653960779378 1.0167921855880366 0.9825386633287035 0.9835685837383082 0.9760823941804221 0.9334592302058233 1.0647692402991606 0.8677899492848152 1.0 19.062590794441505 3.504270287212405 20.84001502165447 0.9783878843403924 0.9978261746618463 0.043355652926185484 0.04808332354048742 389.1568819653721 298717.5517703698 0.012356071799311478 0.01903478944422203 3193.524756604876 -3.504270287212405 0.019438290321453944 LVS(ph)PGSANETSSILVESVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 LVS(0.639)PGS(0.361)ANETSSILVESVTR;LVS(0.946)PGS(0.054)ANETSSILVESVTR;LVS(1)PGSANETSSILVESVTR 318.69 1.5027999999999994e-66 468096000.0 75593.0 88183.0 75903.0 78782.0 85153.0 91384.0 90280.0 81787.0 92176.0 87328.0 True False 75186.01568717179 91118.11784725082 86589.48263929696 88755.79312229964 95996.72980862651 85066.83917479722 85912.81149690862 87890.36124597097 69460.45989511981 81754.65227473764 0.9196542777101925 1.1145312873577777 1.0591382903606732 1.0856359932158304 1.1742051019436566 1.040513742128447 1.0508614385417165 1.0750502729876972 0.8496208834904829 1.0 16.319013209520662 1.2567851567762864 24.99007893366829 0.9248104596875745 1.0694270010445739 0.3927623593117946 0.06952160476888154 186.73329641091829 256056.4089290984 0.043793106112502686 0.015927279446253315 18.062803474524397 -1.2567851567762864 0.14461654135699942 LVS(ph)SESK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVSSESK 7 0 A0A669KBF0;O76024;H0Y9G5 A0A669KBF0 WFS1 Wolframin 1 LVS(0.949)S(0.051)ESK 100.98 0.0098527 157560000.0 274730.0 275690.0 235070.0 199090.0 311600.0 289500.0 184000.0 173030.0 294640.0 231380.0 True False 273250.8842053728 284866.17499187554 268165.81273493206 224294.7735868425 351280.4130021023 269487.5464096973 175099.21705174109 185942.37722853676 222029.91997372525 216613.13030561598 1.2614696247630395 1.3150919087405386 1.237994263582181 1.0354625006821545 1.6216949199085318 1.244096080553758 0.8083499684654223 0.8584076919353579 1.0250067466384276 1.0 17.724761170996427 2.2960266897269648 6.719417545197143 0.9022809902959859 1.2913523337003265 0.5938033572264168 0.14685194920378145 0.13564016158790357 12.322507969185207 0.051457931604498124 0.04261965879699021 197.70911392408703 -2.2960266897269648 0.3890713434043407 LVSDEMVVELIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVSDEMVVELIEK 13 0 F8W1A4;P54819-2;P54819;P54819-6;P54819-3;P54819-5;F8VZG5;A0A5F9ZHP2;P54819-4;G3V213 F8W1A4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed 0 143.79 9.5373e-05 12815000.0 22452.0 22554.0 19649.0 15874.0 20591.0 27899.0 20629.0 19582.0 30018.0 26189.0 False True 22331.1209266517 23304.69625581908 22415.40840783035 17883.646772402106 23213.14179758115 25970.407797181866 19631.096459567198 21043.308275381212 22620.466120592184 24517.595598469044 0.910820183690693 0.9505294335336169 0.9142580200331731 0.7294209051037133 0.9467951987523054 1.0592559002320578 0.8006941945315806 0.8582941255746637 0.9226217158914505 1.0 14.581529882711497 3.9942943680159275 24.571991835749472 0.890991176647561 0.9311045617000807 0.004330228141732895 0.08968104430693478 878.8220808776308 3784833.959768652 0.02293262086874807 0.04723603673434898 9869.482197811722 -3.9942943680159275 0.04011338505251971 LVSDSLSEHEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LVSDSLSEHEK 11 0 Q96KR1;H0Y8W1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ;;; 191.53 1.7922e-06 1832030000.0 1413980.0 1809760.0 1742310.0 1729290.0 1747540.0 2010450.0 1950980.0 1883180.0 2473250.0 2094640.0 False True 1406367.2887879466 1869996.7675769797 1987612.1035699998 1948217.9366919037 1970078.860518913 1871472.3235902437 1856603.643932638 2023712.454194281 1863750.6773520736 1960958.2818884752 0.7171836860463767 0.9536137432643921 1.0135922431026203 0.9935030003880031 1.0046510824399866 0.9543662100694701 0.9467838561790617 1.0320017885568535 0.9504285198546972 1.0 20.903127412782425 4.733756088100233 3.598412408340292 0.9879230549131627 0.6875591426324544 0.8982144168291086 0.027063112262378546 0.07541002344864549 1.7762200279977147 0.006503406482185322 0.06071321823155192 54169.65730419208 -4.733756088100233 -0.30036391228070825 LVSELS(ph)GGTGGDEEEEWLYGGPWDVHVHSDLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAK 33 0 Q6UN15;A0A0B4J203 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 LVS(0.023)ELS(0.819)GGT(0.159)GGDEEEEWLYGGPWDVHVHSDLAK 172.67 2.3133e-14 66519000.0 64848.0 66001.0 61665.0 57362.0 63951.0 77635.0 59289.0 18717.0 101610.0 41440.0 True False 64498.865573290146 68197.80338655299 70346.89599821152 64624.02331854163 72094.78078272597 72268.27518313253 56420.96456402537 20113.757583000202 76569.57700424321 38795.26372143105 1.662544841463729 1.7578899289420105 1.8132856758839584 1.6657709503555302 1.8583397525121035 1.86281180357618 1.4543260994217093 0.5184591017972402 1.9736836319518327 1.0 15.24359291282044 1.9925305939389075 11.079223764862677 1.079426552702516 1.7616049430989131 0.383998640423717 0.34087755333904274 0.24034498069993476 338.2502379261407 0.1272418457509697 0.08823233258111951 98.29481144862116 -1.9925305939389075 0.6821783903963972 LVSFHDDS(ph)DEDLLHI ddPTM_BT-474_Trastuzumab_2h_R1 17 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVS(0.001)FHDDS(0.999)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVS(0.004)FHDDS(0.996)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI 319.28 1.1068999999999998e-56 10619853800.0 1572893.7 2337570.8 2245010.5 2324567.3 2346475.2 2359655.2 2163594.7 1696214.5 2169504.3 2225946.5999999996 True False 1564425.4150841201 2415375.4309866144 2561088.4644189244 2618857.281836744 2645284.9080718593 2196537.7900548666 2058933.3586266113 1822794.6391927088 1634859.035133223 2083884.7822592352 0.7507254855942922 1.1590734053770453 1.2289971529243238 1.2567188474775082 1.2694007512277068 1.0540591345330999 0.9880264859914314 0.8747098950530909 0.7845246767245919 1.0 20.99084408270912 2.1516957604184435 2.139297269466818 0.8775860845664023 1.1456568795307223 0.33790103064149013 0.14784705592146483 0.34043198494881755 3.083537244102292 0.07551738684967897 0.04639777802452108 141.80637667666923 -2.1516957604184435 0.26807079496431996 LVSFHDDSDEDLLHI ddPTM_BT-474_Trastuzumab_2h_R1 2 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 ; 240.59 7.5769e-18 53843000.0 37914.0 85176.0 93692.0 84114.0 116969.0 102383.0 106541.0 58137.0 79978.0 86402.0 False True 37709.8752366414 88011.03167002062 106883.0192145372 94762.82377559724 131864.30882041992 95305.5041936581 101387.20480385616 62475.47815370429 60268.49355029387 80887.75038752626 0.46620007425075644 1.08806378281467 1.3213746049614414 1.1715349150099574 1.6302135760812897 1.1782439706513979 1.2534308880902088 0.7723725515221976 0.7450880171787779 1.0 16.303633617516738 1.7244040099304556 7.501230653646948 0.8229873118761747 1.1813090790066776 0.20947487770143036 0.28061568433917866 0.17400298630123726 26.986286421389806 0.1406929271588904 0.07409250001036527 53.015640169917766 -1.7244040099304556 0.3583217671305029 LVSGMQHPGSAGGVYETTQHFIDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVSGMQHPGSAGGVYETTQHFIDIK 25 0 P49257 P49257 LMAN1 Protein ERGIC-53 0 172.32 3.4734e-12 663970000.0 255470.0 332030.0 379520.0 299540.0 336950.0 365750.0 421980.0 308590.0 515100.0 360210.0 False True 254094.57790538503 343081.41783362615 432953.11715302395 337461.7332874718 379858.58524088 340466.56338289025 401567.21527985635 331618.55278826866 388160.506986376 337221.08940870326 0.7534955134357832 1.0173782975293704 1.2838850556831454 1.0007136086274748 1.126437809411443 1.0096241726158874 1.1908128758612937 0.9833861617900046 1.1510564409449953 1.0 18.36333523798235 4.694066065151737 3.9398902100134947 1.0901546816753984 0.7354361481128596 0.5390884524423141 0.09371178710575588 0.146760363716575 4.351242379811301 0.020781838204059 0.1349574913909935 49438.588756134755 -4.694066065151737 -0.3547185335625388 LVSGWVKPIIIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVSGWVKPIIIGR 13 1 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 157.56 1.1741e-06 0.0 996960.0 1285500.0 1233700.0 1210600.0 1138900.0 1236800.0 1130500.0 1130800.0 1506600.0 1157300.0 False True 991592.4781326692 1328287.0903988385 1407394.2364873663 1363861.8358743847 1283932.1642108285 1151302.9271140383 1075813.3960706142 1215186.0380860504 1135318.6174056968 1083440.123185621 0.9152259150391313 1.2259903080691694 1.2990050916235483 1.2588252979447025 1.185051334849686 1.062636413841571 0.9929606381083782 1.121599627040818 1.047883120728018 1.0 20.047187993757007 2.734149879424588 5.534210705071892 1.0531926246260563 1.191412998408252 0.28678794118187334 0.10236510592840978 0.22275054807452138 25.705228117084225 0.03329958861400581 0.03309714614331938 542.1879726788595 -2.734149879424588 0.13822037378219565 LVSPGS(ph)ANETSSILVESVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 LVSPGS(0.928)ANET(0.02)S(0.02)S(0.02)ILVES(0.005)VT(0.005)R;LVS(0.058)PGS(0.942)ANETSSILVESVTR 280.63 1.0604e-44 342729000.0 32415.0 37327.0 27447.0 33741.0 28487.0 35810.0 34562.0 32330.0 36189.0 35970.0 True False 32240.48124164507 38569.40663035199 31311.299026399258 38012.607140457345 32114.650594322473 33334.53898767276 32890.10402033843 34742.62876841354 27270.70585775568 33674.36380453368 0.9574191639903956 1.14536407738041 0.9298260008161974 1.1288292589907696 0.9536824743218693 0.9899085007564369 0.9767104795580531 1.0317233896408768 0.8098358150446824 1.0 15.039363069269266 2.3235513535469723 0.7626276746034936 0.9444247038106656 1.0367420296402627 0.14475156180719628 0.08467583423893872 1.3189003573354443 1.495595713489917 0.06350792248244282 0.041818351237016924 210.64509634802187 -2.3235513535469723 0.09231732582959717 LVSQKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVSQKPK 7 1 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ; 78.49600000000002 0.045747 0.0 1253910.0 1519530.0 1387160.0 1214060.0 1180110.0 1372950.0 1743010.0 1463830.0 2212100.0 1423920.0 False True 1247159.0878824985 1570106.6374747192 1582460.0705891345 1367759.8715196245 1330390.0134400222 1278041.1980766638 1658693.9473551905 1573068.4277781278 1666957.5956213605 1333044.2065207567 0.9355721901658324 1.177835385949199 1.1871024703069322 1.026042395915343 0.9980089234342333 0.9587387963767153 1.2442902787780603 1.1800572104685365 1.250489359217964 1.0 20.346293193315034 2.2278006661524556 24.997677140058013 1.185485620810279 1.0563131595869897 0.24816814218638272 0.10119596774044792 289.5243386737862 672622.1653494957 0.0378693548674347 0.02824846132509527 168.9665225778103 -2.2278006661524556 -0.1291724612232894 LVSS(ph)KEDLAGPSAGSGSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LVSSKEDLAGPSAGSGSAR 19 1 Q5JS13-2;Q5JS13-7;Q5JS13 Q5JS13-2 RALGPS1 Ras-specific guanine nucleotide-releasing factor RalGPS1 1 LVS(0.057)S(0.943)KEDLAGPSAGSGSAR 107.88 0.00017312 270500000.0 113070.0 107490.0 90206.0 95650.0 80258.0 99053.0 105170.0 110510.0 154170.0 111330.0 True False 112461.24368325806 111067.73967092276 102906.22071539234 107759.28019278456 90478.38057356465 92205.69925568132 100082.52531158473 118756.81735840945 116176.86927215988 104224.82408559165 1.0790255073100674 1.065655333509717 0.9873484711366224 1.0339118452652925 0.8681077791914704 0.8846807856443109 0.9602561212230478 1.1394292904815442 1.114675609111635 1.0 16.669339411552567 -0.6983379563779604 8.22222382120696 0.9999999999969648 1.0146648292057492 0.0026237845090143486 0.08646526143441491 0.0 0.0 0.09315936459401966 0.021957872811820427 0.2002912807467184 0.6983379563779604 0.014664829208784425 LVTDQNISENWR ddPTM_BT-474_Trastuzumab_2h_R1 3 LVTDQNISENWR 12 0 P24666;F2Z2Q9;G5E9R5;P24666-4 P24666 ACP1 Low molecular weight phosphotyrosine protein phosphatase 0 ;; 281.41 1.0349e-27 721360000.0 333725.0 356070.0 330522.0 355154.0 326478.0 347550.0 345452.0 284989.0 329911.0 355699.0 False True 331928.2616803334 367921.57470114 377056.6246512752 400116.45998523955 368053.038113287 323524.6865446993 328741.1670052067 306256.32632481935 248608.85463091123 332997.98529076466 0.9967875973498843 1.1048762783951411 1.1323090268009874 1.2015582005274563 1.1052710658051377 0.9715514832986346 0.987216684563899 0.9196942319558024 0.7465776539573741 1.0 18.345153923145315 2.3221510156850527 1.3694337078221603 0.8855140525437079 1.1141573629878476 0.5863644097965104 0.07853667984440675 0.2954612375880753 1.100368408101272 0.04515910503259118 0.02859327292196495 209.96698674799435 -2.3221510156850527 0.22864331044413977 LVTSIGDVVNHDPVVGDR ddPTM_BT-474_Trastuzumab_2h_R1 8 LVTSIGDVVNHDPVVGDR 18 0 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ;;;;;;; 311.95 3.4958e-61 15321322000.0 3962551.0 5070373.0 4650520.0 5191689.0 4765162.0 4900415.0 4713121.0 4539568.0 5124009.0 5084779.0 False True 3941217.0656968066 5239137.300199803 5305272.792955527 5848956.295084139 5371977.135372022 4561660.845386107 4485129.331359337 4878333.6156192245 3861265.6401528856 4760264.0509216795 0.8279408502420597 1.1005980433344669 1.1144912837195078 1.2287041711376636 1.1285040237068158 0.9582789518793356 0.94220179456031 1.0248031544961638 0.8111452639702349 1.0 22.1826101710905 2.726629955158218 22.365317800009773 0.9546998487506754 1.091361583172668 0.26776548321263394 0.10862634933805997 253.7419521913274 475664.5248800132 0.03556007508496859 0.03384455513189742 532.8806558442816 -2.726629955158218 0.1366617344219926 LVVADTR ddPTM_BT-474_Trastuzumab_2h_R1 4 LVVADTR 7 0 P22314;P22314-2;Q5JRR9;Q5JRS0 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 114.54 0.013684 739840000.0 1455090.0 1869980.0 1795450.0 1746960.0 1459800.0 1596420.0 1767720.0 1430940.0 2153030.0 1650440.0 False True 1447255.9571156986 1932221.1538732187 2048233.7536688382 1968124.9568801557 1645696.8770875107 1486063.2429684605 1682208.6302538253 1537724.0089660909 1622444.6056239114 1545107.5061872245 0.9366700707363795 1.2505415617591897 1.3256253985349862 1.2737786522937733 1.0651018589305186 0.9617863074366494 1.0887324173351003 0.9952213699101408 1.0500528921948786 1.0 20.55927579143265 3.1068098014820587 5.577180695028884 1.0219392921275532 1.2087665217553936 0.40275284581109716 0.1019682743670175 0.20175975956240885 9.230390326452143 0.030004193112718826 0.03610759387222019 1278.821123999904 -3.1068098014820587 0.18682722962784037 LVVEEYYEVLDHCSSILNK ddPTM_BT-474_Trastuzumab_2h_R1 2 LVVEEYYEVLDHCSSILNK 19 0 O00170;E9PMH2;V9GYQ3 O00170 AIP AH receptor-interacting protein 0 ; 196.65 8.247099999999999e-16 720760000.0 388150.0 570800.0 604810.0 628900.0 655910.0 678320.0 723490.0 632750.0 720690.0 796510.0 False True 386060.243527519 589798.7329441129 689961.9908972406 708518.6755174311 739436.2506168451 631429.3349935262 688492.0246998041 679969.0180393963 543085.6062512349 745676.0498734802 0.5177318536555148 0.7909583968054019 0.9252838293710886 0.9501695483415973 0.9916320240435591 0.8467877372495223 0.9233125092546843 0.911882603919983 0.7283130608035231 1.0 19.508189479252305 4.6873187573924975 2.353215718312163 0.9093907573178343 0.4487671628775807 0.7217768495164926 0.07373827148025945 0.24905042065949906 1.805318228366168 0.017978933347951528 0.22385097477719915 48676.434309977056 -4.6873187573924975 -0.4606235944402535 LVVLDEELEGISPDELKDELPER ddPTM_BT-474_Trastuzumab_2h_R1 6 LVVLDEELEGISPDELKDELPER 23 1 P60983;G3V4P8 P60983 GMFB Glia maturation factor beta 0 ;;;;; 274.39 9.792699999999999e-52 1140850000.0 542555.0 482591.0 412821.0 381238.0 387745.0 502525.0 456803.0 480855.0 688542.0 489185.0 False True 539633.9441635269 498653.74970258045 470942.6084955437 429502.69171078753 437122.0274053271 467786.62956660887 434705.6937330781 516738.84183221526 518860.0500901046 457964.79448765056 1.1783306285961215 1.088847343081144 1.0283380167298932 0.9378508935196535 0.9544882765374109 1.0214467033212598 0.9492120332511723 1.1283374793259344 1.1329692944423397 1.0 18.804877171513898 -0.27482371210046525 6.965342846431997 1.0000000047402324 1.0426415274418457 0.027484806766595704 0.08011514539553857 0.0 0.0 0.08216727294870121 0.019367011964544205 0.5310999834668386 0.27482371210046525 0.042641522701613255 LVVSSPTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 LVVSSPTSPK 10 0 Q9Y4G2 Q9Y4G2 PLEKHM1 Pleckstrin homology domain-containing family M member 1 1 LVVS(0.001)S(0.006)PT(0.023)S(0.97)PK 91.123 0.010871 65478000.0 210730.0 175680.0 141950.0 152460.0 154150.0 212400.0 202610.0 170710.0 282860.0 182460.0 True False 209595.45309430413 181527.40259919755 161935.3261484817 171761.42036792389 173780.0887813673 197717.28793581942 192808.98025463737 183449.24704781565 213152.9431298121 170815.24658813505 1.2270301233687577 1.062711943020469 0.9480144740178588 1.005539164674628 1.0173570114638595 1.1574920382402973 1.1287574388458015 1.073962955368635 1.247856660264997 1.0 17.38207722688584 2.7422142393553703 24.94750547899314 1.1223472682129179 1.0443457623296037 0.12881187869658495 0.08919848960009741 610.235190751093 4166786.660969829 0.027758400918818243 0.028457392393813688 552.3498486657303 -2.7422142393553703 -0.07800150588331412 LWAHVYAGAPVSSPEYTK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWAHVYAGAPVSSPEYTK 18 0 D6RDM7;P61086;P61086-2 D6RDM7 UBE2K Ubiquitin-conjugating enzyme E2 K 0 ; 203.99 1.1220999999999998e-15 1115770000.0 1330810.0 1571210.0 1503370.0 1377300.0 1296650.0 1664250.0 1715050.0 1507790.0 2001920.0 1681880.0 False True 1323645.0668268902 1623506.775033497 1715031.4284737092 1551666.0387822506 1461770.6916533224 1549204.3147231068 1632086.4793727645 1620308.9462024816 1508573.640353649 1574540.9784700882 0.840654568490823 1.0310984580477458 1.0892262900265253 0.9854719946952005 0.9283789444931819 0.983908539635723 1.0365474774486916 1.0290674986286252 0.9581037654665954 1.0 20.586499874378482 2.3654403807676716 10.99598264661219 1.0115535296308442 0.9821401153512893 0.041613115983191284 0.06380113476058936 1.3852583244712644 129.18197728066818 0.022787005670648987 0.01905710393501666 231.9745712833523 -2.3654403807676716 -0.029413414279554906 LWCSTTADYDRDHEWGFCR ddPTM_BT-474_Trastuzumab_2h_R1 2 LWCSTTADYDRDHEWGFCR 19 1 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 ; 186.05 1.2854e-14 127912000.0 29059.0 29548.0 26818.0 26290.0 21496.5 26369.4 26848.0 26550.0 40233.0 27446.0 False True 28902.54957275841 30531.4873178568 30593.74129376528 29618.311304425562 24233.95185526216 24546.545444890773 25549.259670680127 28531.295818168255 30318.11624457942 25694.3727822972 1.124859120619265 1.1882557934588798 1.1906786576570425 1.1527158711121317 0.9431618378308407 0.9553276763308559 0.9943523388235009 1.1104102855480336 1.1799515987978453 1.0 14.649164814922184 3.37251258156112 8.14773145283428 1.035312332918834 1.1701701351120823 0.47574465680661293 0.06870124272151122 0.23967384107957443 16.81256841346371 0.02112693924678334 0.028626957134444315 2357.8305015928127 -3.37251258156112 0.13485780219324828 LWDCETGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LWDCETGK 8 0 Q13347;Q5TFK1 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 117.04 0.0050165 212700000.0 211290.0 225240.0 205050.0 208800.0 200910.0 242270.0 238600.0 201720.0 318350.0 248650.0 False True 210152.43811652606 232736.97723954456 233919.25767344984 235234.05859125356 226494.69761313318 225522.4451422361 227058.00645948583 216773.37071340514 239896.90817144763 232780.94412002506 0.902790556636666 0.9998111233690253 1.0048900633070628 1.0105382959094953 0.9729950124111079 0.968818328299045 0.9754149220324994 0.9312333169403841 1.0305693581505257 1.0 17.82861343582401 2.857122895412583 0.0022246952975082134 1.9536445171906842 4.62973125649886e-05 0.05559369657605184 0.035621139185927186 333351.89483140176 268.7509636584747 117218.17744568734 118779.17123583704 719.6525944295149 -2.857122895412583 -1.9535982198781192 LWDEESAQLLPHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWDEESAQLLPHWK 14 0 Q8TE77;Q8TE77-2;Q8TE77-3;A0A087WWG1;Q8TE77-5 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 ; 189.86 6.698100000000001e-07 814070000.0 1013780.0 1128960.0 1076810.0 1092610.0 984540.0 1150570.0 1182300.0 1012420.0 1363970.0 1224440.0 False True 1008321.9211215472 1166536.7511292673 1228415.4881996945 1230934.313972174 1109915.3331742277 1071033.8040504507 1125107.6321753985 1087971.921364592 1027837.8697616123 1146295.1909041759 0.8796354805660505 1.0176582440419428 1.0716397468532899 1.0738371090968604 0.9682630983549252 0.9343437995283218 0.9815164899086203 0.9491202004489091 0.896660718737617 1.0 20.128547180272697 3.018638524128293 24.678909737056028 0.9516302816788828 1.016231895713632 0.1924902700831691 0.05622152309700065 318.4285215146965 421621.51473956427 0.01659127724643236 0.019827243619552848 1043.8510301096692 -3.018638524128293 0.06460161403474929 LWDFQGFECIR ddPTM_BT-474_Trastuzumab_2h_R1 2 LWDFQGFECIR 11 0 P43034;I3L3N5;P43034-2 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 ; 122.51 0.0009056 146051000.0 161795.0 220330.0 196075.0 184976.0 160535.0 155945.0 189174.0 177038.0 240000.0 181313.0 False True 160923.9136971144 227663.55085770212 223680.65568554788 208393.94263398318 180978.1806845071 145164.8892050442 180022.93090514134 190249.4745407484 180855.21583523616 169741.44911013092 0.9480531392936584 1.341237229039976 1.3177727470702831 1.227713936262992 1.0661991024189124 0.8552117939729554 1.0605714270080235 1.120819196125229 1.0654746780080477 1.0 17.37297937357762 3.196815827293693 5.065965465118198 1.0322600329277218 1.2266191584710227 0.3545310406528188 0.11896502998257377 0.21142728034332559 12.432154494442916 0.035293231452692156 0.04362795621031501 1573.3155218256547 -3.196815827293693 0.19435912554330081 LWDGVSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 LWDGVSNR 8 0 Q05048;A0A0A0MSZ9 Q05048 CSTF1 Cleavage stimulation factor subunit 1 0 ; 106.94 0.0095357 230920000.0 406990.0 550550.0 584710.0 499050.0 412130.0 448100.0 481680.0 437440.0 642600.0 518000.0 False True 404798.81106083974 568874.7239354973 667032.085609572 562229.6788312513 464612.31261410867 417123.9017139392 458379.29820370936 470083.99407531176 484239.8403988455 484940.7965178878 0.8347386195747879 1.1730807719628793 1.3754917928109756 1.1593779753494355 0.9580804831234089 0.8601542800875754 0.9452273380484731 0.9693636778978895 0.9985545532071636 1.0 18.887449102595163 3.2318899945567745 8.349044051287203 0.949559118552753 1.1557012505856425 0.3163235781588447 0.1284695804945825 0.14002730564192892 79.01247618982838 0.03773643459798563 0.047331147897867666 1705.6502983594792 -3.2318899945567745 0.20614213203288956 LWDVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LWDVDR 6 0 Q9BZK7;A0A0D9SF63 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 0 ;;; 125.86 0.041275 1164450000.0 2084160.0 2208170.0 1609550.0 1858660.0 1645810.0 2062150.0 1466130.0 1614910.0 2226180.0 1994400.0 False True 2072939.1141319461 2281667.603583045 1836160.6495406027 2093966.1654272962 1855394.148019866 1919598.424278954 1395207.690739506 1735422.7845468218 1677567.768283694 1867115.6845082538 1.1102360348271085 1.2220279774383516 0.9834209335690928 1.1214978176238655 0.9937221155680694 1.028108991963464 0.747252943304884 0.9294671984954611 0.8984808933922691 1.0 20.832379887512747 2.892415114446879 1.3358686924695191 0.8915320863160979 1.1171682305292767 0.5191788310235297 0.08670696226740622 0.30928607932255353 1.139101823491786 0.034578694933056736 0.037670092771760096 780.5758568287248 -2.892415114446879 0.2256361442131788 LWDWDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWDWDKK 7 1 P35606;P35606-2;D6RBT6 P35606 COPB2 Coatomer subunit beta 0 ; 121.62 0.0070878999999999985 1928640000.0 2708900.0 2181600.0 2043470.0 1596740.0 1610630.0 2236600.0 2402700.0 2019020.0 3436200.0 2243100.0 False True 2694315.5833870843 2254213.2371949526 2331172.8138403497 1798887.1202825585 1815734.18354806 2081989.1063900848 2286472.2217946625 2169689.52477582 2589394.5527209956 2099943.4375854703 1.2830419787330212 1.073463788047007 1.1101121926030295 0.8566359874678013 0.8646586146319274 0.9914500881909327 1.0888256230480495 1.0332133170551223 1.2330782374301947 1.0 21.00191903844704 4.840853277557142 1.6246269397282018 1.0144030118326752 1.426887142681429 0.36081262780678447 0.10464788524815558 1.5379203168123823 3.2078366019872115 0.029196903826975953 1.0765351291021639 69319.15779795665 -4.840853277557142 0.4124841308487537 LWEAGWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWEAGWK 7 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 128.48 0.008731399999999999 599640000.0 1712230.0 1813730.0 1708690.0 1627810.0 1356060.0 1796130.0 1639650.0 1559670.0 2434000.0 1778440.0 False True 1703011.5439266353 1874098.9066270625 1949258.6998002771 1833890.579096882 1528746.2030026657 1671967.7607352347 1560333.865428732 1676060.4952437861 1834173.3139290195 1664938.4366009142 1.0228675766555368 1.1256265489630737 1.170769235035394 1.1014765103512747 0.9181998381415866 1.00422197240438 0.9371721086662281 1.0066801620999142 1.1016463273402528 1.0 20.66703740196449 3.3426701267133225 8.126694372984161 0.9924615630762949 1.1126702562015658 0.47266261804323395 0.05703723149950351 0.20380445531616612 14.343349572936612 0.015901702087700965 0.02153917620135737 2201.253840647932 -3.3426701267133225 0.12020869312527094 LWEDS(ph)AGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWEDSAGEK 9 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;H0Y5B5 Q86U86-8 PBRM1 Protein polybromo-1 1 LWEDS(1)AGEK;LWEDS(1)AGEK 143.0 0.00010804 109624000.0 197332.0 161328.0 128186.0 117376.0 133560.0 186499.0 177938.0 186393.0 284380.0 199610.0 True False 196269.58643764604 166697.7049551644 146233.47458731433 132235.7895651677 150568.0743278585 173606.76310142377 169330.45915082973 200302.59214447573 214298.35949676842 186870.71890528113 1.0502960955436196 0.8920482884194297 0.7825381924143796 0.7076324762907016 0.805733906360026 0.9290206840239084 0.9061369279403158 1.0718778913993625 1.1467733455094669 1.0 17.51168100285863 1.8962652331002157 1.8742350010168327 1.088780156963693 0.8464810705658687 0.50678166702345 0.09293939312219496 0.27605160009428553 1.8084514777736502 0.06339930910469825 0.029545634528987143 78.75266025093526 -1.8962652331002157 -0.24229908639782427 LWEEQLAAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWEEQLAAAK 10 0 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ; 147.95 6.0455e-05 193095000.0 314330.0 348940.0 288500.0 310060.0 268770.0 308260.0 357980.0 312840.0 426520.0 321650.0 False True 312637.6822053459 360554.25696131587 329118.2923130465 349313.56420883216 302996.2663754008 286950.7117659875 340663.13978359895 336185.70936933166 321409.86107518757 301122.02162158035 1.0382425055522417 1.1973692758161139 1.0929731759261667 1.1600399144763118 1.006224203542894 0.9529383145766671 1.1313126085866607 1.1164434522554307 1.067374147345168 1.0 18.199988693367885 1.2986746836772405 0.01064994978536064 1.4580641524727049e-05 2.132271644514671 0.12148006476656026 0.06891786488685415 2208.122702771793 21.266001118615254 2140.4208892629526 2113.541724772007 19.891827466123235 -1.2986746836772405 2.1322570638731464 LWEVSVADRRS(ph)LLEPFVY(ph)LASKMTQPQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LWEVSVADRRSLLEPFVYLASKMTQPQSK 29 3 K7ERG2;H7BXP1;Q9NYR9-3;Q9NYR9-2;Q9NYR9 K7ERG2 NKIRAS2 NF-kappa-B inhibitor-interacting Ras-like protein 2 2 LWEVS(0.316)VADRRS(0.836)LLEPFVY(0.821)LAS(0.02)KMT(0.006)QPQSK 48.75899999999999 0.083239 376170000.0 70006.0 72138.0 70115.0 67710.0 70474.0 74206.0 74303.0 66138.0 88544.0 79557.0 True False 69629.09547439778 74539.06972165822 79986.58254949482 76282.07905753725 79448.44616787587 69076.31388213475 70708.68002497562 71073.55340195911 66723.51762881309 74479.60414782555 0.9348746716778921 1.0007984142036341 1.073939415557837 1.0242009195716748 1.0667141303569265 0.9274527526359235 0.94936970777442 0.9542686781859611 0.8958629465374394 1.0 16.184557784676464 2.7255553124970584 24.970656770793507 0.9439215812481604 1.0222511898674154 0.42795007521795003 0.043138956336001906 726.1936418876207 1394315.736971124 0.013987063214735999 0.013253763625901182 531.5636960681461 -2.7255553124970584 0.07832960861925498 LWGDHGQEALESAHVCLINATATGTEILK ddPTM_BT-474_Trastuzumab_2h_R1 1 LWGDHGQEALESAHVCLINATATGTEILK 29 0 Q13564-2;Q13564;Q13564-4;H3BSS8;J3KRK3 Q13564-2 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 81.34100000000002 0.0017546 345690000.0 73565.0 72924.0 75180.0 83076.0 58599.0 113900.0 75520.0 67380.0 121710.0 75942.0 False True 73168.9342138398 75351.23125651116 85764.69052372567 93593.41308202586 66061.23530651533 106026.36109176005 71866.80908558414 72408.23774870722 91716.20133044406 71095.31654278282 1.0291667267535007 1.0598620966989756 1.2063339006601834 1.3164497695949413 0.929192505483281 1.491326943146204 1.01085152412729 1.0184670561967937 1.290045614681978 1.0 16.117466903908188 -1.5285079123708014 4.978140521893158 0.9993604607812459 1.1422416265078263 0.06679010424850418 0.16604476054701386 0.0011225461225792383 0.00010631894513718699 0.1531256177426846 0.03593243194664291 0.029613660120507417 1.5285079123708014 0.1428811657265805 LWGDIYFNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LWGDIYFNPK 10 0 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 134.91 0.0092386 0.0 142220.0 167540.0 191220.0 156310.0 135210.0 178850.0 208170.0 178620.0 201260.0 174990.0 False True 141454.30332212735 173116.4676199311 218142.1138859644 176098.82997317443 152428.19204754248 166486.5204676145 198100.0218133745 191949.5314139819 151662.169745832 163821.98838352363 0.8634634747013857 1.0567352363874876 1.3315801867529038 1.074940132950343 0.9304501401282768 1.0162648012661948 1.2092395152084383 1.1716957736137892 0.9257741969947022 1.0 17.321769484668806 LWGDVTEIKS(ph)PILSGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 LWGDVTEIKSPILSGPK 17 1 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;A0A590UJF3 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 LWGDVTEIKS(1)PILSGPK;LWGDVT(0.002)EIKS(0.998)PILSGPK 167.73 6.958599999999999e-10 270600000.0 959800.0 731580.0 742620.0 625120.0 615640.0 942080.0 882570.0 828180.0 1370980.0 908240.0 True False 954632.5434438039 755930.1980505505 847174.441031246 704260.1279050021 694038.1048158351 876956.2270177808 839876.7173551902 889982.9970128285 1033120.3491908007 850275.3456166156 1.1227334161400493 0.8890416521513435 0.9963530583341554 0.8282730194820315 0.8162510043291 1.0313791074135124 0.9877702813388239 1.046699756262387 1.2150421090259729 1.0 19.697570580898187 1.8901581505532328 1.585955307418481 1.1033858305500144 0.9332788215587305 0.289862573143831 0.09962331691406448 0.45129910309573973 2.1254320156854765 0.06884799283092484 0.030551655348948964 77.65298424548826 -1.8901581505532328 -0.17010700899128384 LWGIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 LWGIDR 6 0 P10644;P10644-2;K7EPB2;K7EM13;P31321;H7BYW5;C9JSK5 P10644;P31321 PRKAR1A;PRKAR1B cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit 0 ;;; 117.56 0.052613 986616000.0 1131620.0 1404930.0 1230150.0 1255200.0 1246720.0 1384720.0 1262000.0 1248510.0 1415940.0 1336450.0 False True 1125527.483654802 1451692.2457518813 1403344.4273445203 1414108.1913014438 1405482.402111619 1288997.5656802629 1200952.2386918322 1341680.1560053215 1067000.5596239343 1251156.6168075898 0.8995896025604381 1.1602801969396699 1.1216376978649147 1.1302407486839146 1.1233464965383806 1.0302447738071567 0.9598736261781059 1.0723518846335232 0.8528113469490798 1.0 20.254830963263622 2.523717053657923 4.386941232417935 0.9871612639546519 1.0948604086074687 0.28432698184331173 0.08455199172095852 0.2910484855836264 12.124696175116632 0.027937991307500187 0.02534541017095166 333.977380185423 -2.523717053657923 0.10769914465281683 LWHLDPDTEYEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 LWHLDPDTEYEIR 13 0 Q5TG12;E9PGC5;Q15262;Q15262-2;Q15262-3;Q15262-4;H0YDP9 Q5TG12 PTPRK Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase kappa 0 ;;; 158.2 4.1668e-05 852167000.0 351244.0 437233.0 388520.0 421902.0 382655.0 420592.0 444247.0 348282.0 441268.0 403610.0 False True 349352.9413308773 451786.0360920698 443220.2389236223 475314.74994141306 431383.84607612155 391517.4650070725 422757.0754216559 374272.5713801608 332523.4140882623 377851.2642520938 0.9245779341836394 1.1956716275286787 1.1730018683434014 1.2579414042248482 1.1416763337552631 1.0361682017447502 1.1188452055558082 0.9905288318168882 0.880037849672008 1.0 18.527458924349812 1.7573223471965647 1.556911651839632 0.9346977129161962 1.1381596387099173 0.4037107350598388 0.09097769536834305 0.35222437971455706 1.6527748607650445 0.06944592749230037 0.02765068594078065 57.190296377242234 -1.7573223471965647 0.20346192579372113 LWLDNTENDLNQGDDHGFSPLHWACR ddPTM_BT-474_Trastuzumab_2h_R1 1 LWLDNTENDLNQGDDHGFSPLHWACR 26 0 A0A0A0MTH3;Q13418;Q13418-2;A0A087WWY6 A0A0A0MTH3 ILK Integrin-linked protein kinase 0 149.18 9.1903e-08 313630000.0 42644.0 54136.0 41753.0 49664.0 53454.0 61947.0 56187.0 40879.0 53329.0 51711.0 False True 42414.40944219379 55937.884034096955 47631.459476418124 55951.45730783533 60261.05005331957 57664.749697552776 53469.02015481613 43929.59855935593 40186.782521988825 48410.75970798557 0.876136001542594 1.155484532189024 0.9839023341862801 1.1557649093989717 1.2447862916594397 1.1911556448481166 1.104486285225476 0.9074346038843416 0.8301208814816396 1.0 15.563040114077557 1.7250198460333777 4.858095581924545 0.899923538594356 1.110845990106689 0.39287716723389143 0.10702342021408993 0.15931952597451945 8.964235565153105 0.05649232950309006 0.028392174148050838 53.09087047076331 -1.7250198460333777 0.2109224515123329 LWLFGYDEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 LWLFGYDEQR 10 0 Q9NT62;Q9NT62-2 Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 0 ; 130.96 0.00061115 526920000.0 415750.0 544200.0 546200.0 548700.0 513710.0 546230.0 637540.0 464660.0 625530.0 536630.0 False True 413511.64819416736 562313.3680241533 623100.2123444926 618165.3637405214 579127.9235022777 508470.4057871124 606699.7545606894 499335.2886956714 471376.51317256363 502381.8139679429 0.8231023430727802 1.119294831918487 1.2402921344287607 1.2304692298833226 1.152764505801223 1.0121194510825944 1.2076467294244115 0.9939358368723398 0.9382833933607363 1.0 18.938424714595612 1.5987040228434128 6.501328341552104 0.9687818315028413 1.1195188093519073 0.21755182674367335 0.11711264081041155 0.1880467728119305 16.89784590180276 0.06418532276843818 0.0305485058954221 39.69209506471071 -1.5987040228434128 0.15073697784906603 LWLNGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LWLNGR 6 0 H0Y943 H0Y943 APBB2 0 143.88 0.02639 586740000.0 383450.0 471110.0 419640.0 402800.0 322220.0 385830.0 458840.0 312040.0 562940.0 371040.0 False True 381385.5478053004 486790.61155799055 478721.6644237324 453794.4386999855 363252.8070524304 359158.480246126 436644.1562609824 335326.0093070139 424210.9800095326 347359.90953667415 1.0979549951921952 1.401401250384064 1.3781718939939702 1.3064099403563267 1.0457534018158716 1.033966414619319 1.2570367053682159 0.9653561050101848 1.2212433512415586 1.0 18.40607172977989 3.2455463872250934 24.709219545663846 1.0864990714333602 1.3093848792923326 0.44088226586378587 0.11477230849007802 119.76864626890517 423628.0463632662 0.030567260920927392 0.040501273034858516 1760.1366548958486 -3.2455463872250934 0.22288580785897238 LWNDVTEELMS(ph)DEEDSLNEPGVWVARPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 LWNDVTEELMSDEEDSLNEPGVWVARPPR 29 1 A0A0C4DFZ6;Q9H972 A0A0C4DFZ6 C14orf93 Uncharacterized protein C14orf93 1 LWNDVT(0.423)EELMS(0.577)DEEDSLNEPGVWVARPPR;LWNDVT(0.001)EELMS(0.999)DEEDSLNEPGVWVARPPR 128.89 1.008e-05 50084000.0 3352.6000000000004 5708.1 5461.2 5720.8 6391.8 6762.1 6892.4 4839.9 6901.9 5731.4 True False 3334.5499741088765 5898.090657880684 6230.089490398649 6445.05269343316 7205.757842833235 6294.651943271209 6558.988280475102 5201.077914514218 5201.019225721734 5365.617145101589 0.6214662514922582 1.0992380742754269 1.1611133112779504 1.2011764013608417 1.3429504282487912 1.1731459351358604 1.2224107876319452 0.9693345190054078 0.9693235810665096 1.0 12.38952840177103 4.738325733572322 4.390106198503242 1.1362541605247247 0.5849425205694309 0.6378128394811319 0.1143020101041258 0.13730742450112743 6.469800080037926 0.029972996835793134 0.23584997423842236 54742.63947748802 -4.738325733572322 -0.5513116399552939 LWPSGDR ddPTM_BT-474_Trastuzumab_2h_R1 6 LWPSGDR 7 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;;;;; 197.16 0.00099688 9092650000.0 1776360.0 2172040.0 2132650.0 2033130.0 1862710.0 2218370.0 2103130.0 1721880.0 2419340.0 2133630.0 False True 1766796.2751321509 2244335.038374091 2432908.5826738956 2290524.0495384843 2099915.0773528414 2065019.303381279 2001393.5671631969 1850375.4291294771 1823126.0744950864 1997459.906707457 0.8845215211575765 1.1235945366600997 1.2180012096884674 1.1467184106408943 1.0512927294817487 1.0338226546860632 1.0019693313705724 0.9263642403614354 0.9127222370637034 1.0 20.929735114792905 2.344441372990072 1.4699157255469144 0.9407033141975638 1.0996436536428278 0.33603428209146247 0.08371062804890717 0.43400917548469736 1.8801334337592732 0.04638279550044577 0.030625981284111155 221.02498663982706 -2.344441372990072 0.15894033944526398 LWS(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 1 LWSLER 6 0 O60437;K7EKI8;K7EQ71;M0QZ12;Q96CP6-2;Q96CP6-3;Q96CP6 O60437;M0QZ12 PPL;GRAMD1A Periplakin;GRAM domain-containing protein 1A 1 LWS(1)LER 88.819 0.053361 26856000.0 50846.0 41637.0 37993.0 42585.0 41153.0 45028.0 43534.0 40927.0 53903.0 45337.0 True False 50572.25078552168 43022.86237490198 43342.084158924044 47976.25663366159 46393.59061705874 41915.32034451072 41428.09410397005 43981.180563095026 40619.32791319474 42443.55384504148 1.1915178208252193 1.0136489166759106 1.0211700065730367 1.1303543715688755 1.0930656463508823 0.9875544469612675 0.976075053828461 1.0362275676458976 0.9570199531710548 1.0 15.373257839288508 2.738311267417725 24.991408237736227 0.9958506959868387 1.0841357563822138 0.4774306083330715 0.051278778306545814 22.378287138748632 2242785.2597489734 0.016092574200288774 0.01607276490347601 547.4081605506454 -2.738311267417725 0.08828506039537509 LWSLDSDEPVADIEGHTVR ddPTM_BT-474_Trastuzumab_2h_R1 3 LWSLDSDEPVADIEGHTVR 19 0 O43172-2;O43172 O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 0 ;; 264.88 2.2787e-31 622067000.0 354554.0 465153.0 405529.0 454380.0 451525.0 430125.0 466313.0 401561.0 477810.0 496136.0 False True 352645.1206586523 480635.3364140733 462623.9582787434 511904.4614113686 509024.03235164954 400391.47115534084 443755.6587013502 431527.5209054415 360060.1278259759 464472.1757166007 0.7592384196417826 1.034798985908113 0.9960208220546133 1.1021208334419346 1.0959193229741115 0.8620354287909834 0.9553977221923177 0.9290707677799402 0.7752027928701327 1.0 18.825232648745477 2.7209606157121478 24.823361881519954 0.9067163136914961 1.005401996389489 0.16304509849457471 0.10486193810613209 1359.5067784341331 1917470.7766995507 0.033821561403422476 0.03195942956150145 525.9695663232009 -2.7209606157121478 0.09868568269799283 LWSLGQDDMAIPSKPPAAS(ph)PEKPSALLGNSLALPR ddPTM_BT-474_Trastuzumab_2h_R1 3 LWSLGQDDMAIPSKPPAASPEKPSALLGNSLALPR 35 2 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 LWSLGQDDMAIPSKPPAAS(1)PEKPSALLGNSLALPR;LWSLGQDDMAIPSKPPAAS(0.998)PEKPS(0.002)ALLGNSLALPR;LWS(0.002)LGQDDMAIPS(0.15)KPPAAS(0.827)PEKPS(0.014)ALLGNS(0.007)LALPR 233.32 1.8044e-47 2085550000.0 2466840.0 1847378.0 1765200.0 1614811.0 1673425.0 2528241.0 2497655.0 2363580.0 3584140.0 2512145.0 True False 2453558.8075316926 1908866.859966418 2013724.8166065502 1819245.907029698 1886525.7545829336 2353469.650509152 2376833.8856813395 2539962.341616049 2700876.722015434 2351817.7553444607 1.0432606021261754 0.8116559438453743 0.8562418631419885 0.7735488444610542 0.8021564384807623 1.0007023908042778 1.0106369340396508 1.0799996453143672 1.1484209249963113 1.0 21.16534483798161 2.5041266610135504 2.6126961906936135 1.0673913183022752 0.8506931545253698 0.5942529058194135 0.07919297398016259 0.1877861738496956 2.5798137805425645 0.02954702918364757 0.02550705506011425 319.24687957192447 -2.5041266610135504 -0.21669816377690543 LWSWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LWSWGR 6 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 186.07 0.0047316 959360000.0 859370.0 732860.0 330400.0 512130.0 426270.0 631830.0 219460.0 381800.0 783230.0 576570.0 False True 854743.2474049819 757252.8020767752 376917.44811171823 576965.6054901276 480552.957799763 588153.0792678377 208843.88138138637 410291.8547411166 590213.4612443004 539772.8089735878 1.5835240923497615 1.4029102420270843 0.6982890613338798 1.0689045389064045 0.8902874502210752 1.0896308029784754 0.38691071115367265 0.760119531625375 1.0934479311149976 1.0 19.04199277738643 4.338076819095281 4.968203002414486 0.850445849498964 1.5371311830708254 0.5841864623849786 0.21001975089655814 0.1315704057106892 5.181963631464936 0.05273150192212086 0.15256244195882337 21780.950051793898 -4.338076819095281 0.6866853335718615 LWTLSANDMEDDS(ph)MDLIDSDELLDPEDLKKPDPASLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLR 37 2 Q6FI81-3;Q6FI81 Q6FI81-3 CIAPIN1 Anamorsin 1 LWTLSANDMEDDS(0.987)MDLIDS(0.013)DELLDPEDLKKPDPASLR 114.58 4.5175e-06 301910000.0 127300.0 84215.0 76525.0 66833.0 69576.0 109610.0 104620.0 97190.0 162690.0 111800.0 True False 126614.63094435961 87018.04536595754 87299.05483277612 75294.05094745809 78436.09119073888 102032.91869418621 99559.13091278885 104442.81132082015 122597.22943431082 104664.82828320436 1.2097151738668408 0.8313972018422676 0.8340820528225628 0.7193825488704364 0.7494025689174667 0.9748539253138918 0.9512185950699656 0.9978787815732763 1.1713316827175657 1.0 16.675417192864437 1.9248487346646765 1.456178253035301 1.0730691327593953 0.8639815704423378 0.24833737761279961 0.13498529779466387 0.5523800981628986 2.180470544296771 0.09785382505715111 0.04386179495836542 84.11021336488237 -1.9248487346646765 -0.2090875623170575 LWTLSANDMEDDSMDLIDS(ph)DELLDPEDLKKPDPASLR ddPTM_BT-474_Trastuzumab_2h_R1 1 LWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLR 37 2 Q6FI81-3;Q6FI81 Q6FI81-3 CIAPIN1 Anamorsin 1 LWTLSANDMEDDSMDLIDS(1)DELLDPEDLKKPDPASLR 160.86 7.1937e-18 241440000.0 137360.0 110160.0 85214.0 93592.0 102330.0 157140.0 143650.0 127170.0 219210.0 142200.0 True False 136620.46902213068 113826.60900687367 97211.39050663426 105440.73760379593 115361.11894257109 146277.2816677717 136701.10070370967 136660.07115617543 165188.63276350894 133124.67425645498 1.0262595554520668 0.8550376528065339 0.7302281943568447 0.7920450374261352 0.8665645162093415 1.098799170662977 1.0268652409272 1.0265570369990897 1.2408566156960887 1.0 17.022418469640662 2.780095290847374 5.725655117410217 1.0715875366552028 0.8421656154356713 0.5874073966490225 0.09383095725066705 0.14737734430946545 12.93062912479361 0.02973518316401425 0.03113147898134188 602.6918113630563 -2.780095290847374 -0.22942192121953153 LYANMFER ddPTM_BT-474_Trastuzumab_2h_R1 1 LYANMFER 8 0 Q02790;H0YFG2 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 92.47 0.027347000000000003 181370000.0 551960.0 542840.0 528240.0 442420.0 323400.0 456290.0 497600.0 448540.0 729270.0 487090.0 False True 548988.3086885205 560908.1012462908 602611.6004556102 498430.3266376549 364583.0730580223 424747.74629112583 473529.1869834042 482012.33243996906 549551.1802173443 456003.49918127013 1.203912491185264 1.230052186558593 1.3215065268963222 1.0930405743213811 0.7995181478050315 0.9314572082313791 1.038433230958974 1.0570364773634333 1.2051468491010136 1.0 18.79868536951125 3.5243904834769437 6.481371509963188 1.005152716250907 1.2446820638170255 0.5494795998560433 0.09973160621478984 0.1788688892363939 18.800161788519706 0.02878393239306433 0.044111018196317006 3344.9565707479155 -3.5243904834769437 0.23952934756611843 LYAVHQEGNK ddPTM_BT-474_Trastuzumab_2h_R1 4 LYAVHQEGNK 10 0 P50990-2;P50990;P50990-3;H7C2U0 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;; 112.75 0.0015796 1402220000.0 3121800.0 3283160.0 3482470.0 2568700.0 1750390.0 2649090.0 3403080.0 2350880.0 5595180.0 3075130.0 False True 3104992.5756645873 3392437.995887871 3972771.5058281305 2893897.156625258 1973291.791125641 2465964.6435871013 3238460.0193719463 2526314.6031267587 4216322.86057082 2878872.570648755 1.0785446383842117 1.178391162733328 1.3799747673211062 1.00521891317097 0.6854390886363404 0.8565730448539427 1.1249056496592895 0.8775360982919271 1.46457432800531 1.0 21.45707250071882 3.5843960291867316 8.643885828942516 0.9775366999254523 1.2079754808606118 0.17654596718958349 0.20411393703188982 0.5096041975386042 37.46738820295041 0.05424054112060432 0.08408785466736916 3840.573042218099 -3.5843960291867316 0.23043878093515946 LYAYEPADTALLLDNMKK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYAYEPADTALLLDNMKK 18 1 O95994 O95994 AGR2 Anterior gradient protein 2 homolog 0 227.22 4.9553e-19 497050000.0 502940.0 612650.0 526960.0 564220.0 477630.0 575640.0 730830.0 663320.0 1014300.0 724500.0 False True 500232.22692188696 633041.6848952551 601151.3875815705 635650.1941492195 538453.3493651928 535847.3617108061 695476.9608582816 712820.30667071 764339.3559236676 678261.7897243429 0.7375208724719549 0.9333294230720767 0.8863117408189671 0.9371752968828726 0.7938724509072366 0.7900302948343643 1.0253813076230274 1.0509515904771995 1.1269090600464284 1.0 19.371482694465538 2.141807729970548 5.723381470240856 1.057896098854779 0.8542910128851661 0.6950636736521463 0.06638190191960956 0.12115534918824523 5.918474423850518 0.02543749949897404 0.018690660054174933 138.61420228426567 -2.141807729970548 -0.2036050859696129 LYCPVEFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYCPVEFSK 9 0 P52788;P52788-2 P52788 SMS Spermine synthase 0 99.442 0.010792 0.0 179830.0 143360.0 149970.0 114310.0 103750.0 157140.0 159300.0 119500.0 211420.0 144640.0 False True 178861.81526099116 148131.65093705003 171084.4724373919 128781.63427953159 116961.94752557157 146277.2816677717 151594.05041490414 128417.69680870468 159318.37388285703 135408.95136746587 1.3209009703915744 1.093957596164067 1.263465012539028 0.9510570237712763 0.8637682098886228 1.0802630120870806 1.1195275414511998 0.9483693323952516 1.1765719494459934 1.0 17.046963587549072 3.7410784655489637 24.999284033291453 1.0158814246094312 1.2128928390733937 0.4668061923637943 0.10061242105346499 201.68986607656933 2002533.4840265873 0.025867347479087272 0.044010283077027035 5509.072218072058 -3.7410784655489637 0.19701141446396253 LYDAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYDAGR 6 0 Q9BUP0 Q9BUP0;REV__Q8WZ42-3 EFHD1 EF-hand domain-containing protein D1 0 ; 105.42 0.07675599999999999 385930000.0 567860.0 723750.0 628550.0 645890.0 627340.0 606740.0 663820.0 587160.0 660160.0 685400.0 False True 564802.704855177 747839.5812338854 717044.3765454615 727659.6077754066 707228.0304645026 564797.4919123315 631708.4905613405 630976.860738067 497472.4136907901 641657.1851995371 0.8802250140463079 1.165481503961229 1.117488268011027 1.1340317299636022 1.1021898402720682 0.8802168898594904 0.9844953117214719 0.9833550925512525 0.7752931396475992 1.0 19.29144319654042 2.7481522894884534 24.32207395326309 0.9336228889022531 1.0897361536456078 0.39759609116093764 0.09481950312404255 474.29657886721276 1202696.6393081555 0.028352819580877254 0.029709184787090025 559.9539202375973 -2.7481522894884534 0.15611326474335474 LYDAYELK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYDAYELK 8 0 P08758;D6RBL5;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 114.28 0.0062496 219870000.0 757190.0 628670.0 553810.0 522620.0 454090.0 617520.0 548040.0 545060.0 884020.0 661330.0 False True 753113.373171718 649594.9009109596 631781.6341971861 588783.6384145648 511915.6698977037 574832.295885722 521529.2114838916 585735.1449585981 666165.1162611073 619123.3532069019 1.2164189402172956 1.0492172481400075 1.0204454910717187 0.9509956866669863 0.8268395421463435 0.9284616593902274 0.8423672096723578 0.946071799625452 1.0759812447883623 1.0 19.239867352907613 4.693249711401181 1.1412893563418605 0.928078716636111 1.3320452141316625 0.5951160299618987 0.06931345721679226 1.0090086096134494 1.1594233109021814 0.020683712581869584 0.47993802842161787 49345.74514299902 -4.693249711401181 0.4039664974955516 LYDCQEEEIPELEIDVDELLDMESDDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYDCQEEEIPELEIDVDELLDMESDDAR 28 0 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 0 92.822 0.0019883 59712000.0 57240.0 64314.0 60153.0 64925.0 57405.0 65684.0 62018.0 59457.0 71988.0 67305.0 False True 56931.82619996187 66454.65261136612 68622.019540751 73144.49834308974 64715.18648390782 61143.41968350452 59017.952408233 63893.98325652845 54247.52198977917 63009.53727729044 0.9035429977753691 1.054676093222436 1.089073535626223 1.1608480478311987 1.0270696989744776 0.9703835693067613 0.9366511001105849 1.0140367001164565 0.860941443690474 1.0 15.943282594531386 2.804628368038508 3.8644459726380993 0.9597799760210494 1.0583490686725399 0.28885948966389563 0.0711706277870274 0.30429356096751725 9.030415298350842 0.022980968084703856 0.02407331384244259 637.7175486693096 -2.804628368038508 0.0985690926514905 LYDDIDFDIEEFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYDDIDFDIEEFAK 14 0 Q96KP4;Q96KP4-2 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ; 263.86 2.7995e-24 335670000.0 709910.0 671730.0 604920.0 534220.0 557190.0 777000.0 753480.0 739840.0 1039170.0 798720.0 False True 706087.9234384167 694088.1269806407 690087.4779411027 601852.1972251888 628144.843776127 723287.8188612608 717031.2938268784 795050.6176313969 783080.4776645936 747745.0057814044 0.9442897217354792 0.928241742324054 0.9228914571217379 0.804889624901265 0.8400522088672547 0.9672920758667114 0.9589248851987587 1.0632643634985663 1.0472560453229147 1.0 19.512186843996133 2.1917616388551693 1.8623169895714506 1.0397000007840465 0.8901649537230397 0.6392860807072599 0.04632770444397323 0.22243336053226523 1.5288073793378136 0.02596012081408671 0.015835971833961127 155.51118791290463 -2.1917616388551693 -0.14953504706100673 LYDEVQEVVYFPAVVHDNLGER ddPTM_BT-474_Trastuzumab_2h_R1 1 LYDEVQEVVYFPAVVHDNLGER 22 0 H9KVC8;F8WBX0;C9JNS3;F8W0M9;C9JID8;Q0VDG4-2;Q0VDG4 H9KVC8 SCRN3 Secernin-3 0 203.84 1.2396e-22 46235000.0 62702.0 76999.0 68717.0 73063.0 73397.0 70424.0 74072.0 64738.0 79461.0 64553.0 False True 62364.41939884711 79561.86516812167 78391.75630112867 82312.76830868193 82743.67289189767 65555.75464026444 70488.85437748126 69569.07829290316 59878.90127284885 60433.17227339618 1.0319567392013458 1.3165263740944855 1.297164344550521 1.362046128181121 1.3691763940103967 1.084764412890556 1.1663934181477973 1.1511736960981738 0.9908283649575793 1.0 15.883053053888478 1.7389327887255048 0.8951603856788545 0.995851083128366 1.271659215948538 0.46309107805594396 0.1039857513009717 0.5008302450609705 0.7580663945850363 0.09332163592746706 0.03966411276277704 54.819212031933645 -1.7389327887255048 0.275808132820172 LYDLNHNEIGELIR ddPTM_BT-474_Trastuzumab_2h_R1 6 LYDLNHNEIGELIR 14 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;;;; 225.85 2.6230000000000004e-12 3333480000.0 1239446.0 1543461.0 1396401.0 1512239.0 1450263.0 1514903.0 1471636.0 1305289.0 1628879.0 1517469.0 False True 1232772.9604513962 1594834.1663431216 1593002.123064926 1703688.3023466407 1634945.396667741 1410181.3213080815 1400447.3444845444 1402696.2933032392 1227463.596310349 1420622.8292494256 0.8677693579672527 1.1226302530881749 1.1213406474022212 1.1992544870243782 1.1508652141902795 0.9926500491711366 0.9857981412451743 0.9873812136641098 0.8640320083824566 1.0 20.438092143891463 2.596818029446253 4.856143146635779 0.9652010618124611 1.1011574658027592 0.3344030072037786 0.08940870237240159 0.2691151581667417 9.576680214107965 0.0300913333359641 0.028136186112292075 395.200995094066 -2.596818029446253 0.13595640399029807 LYDMQHTPTPIGDETEPTIIER ddPTM_BT-474_Trastuzumab_2h_R1 1 LYDMQHTPTPIGDETEPTIIER 22 0 Q9NXC5;Q9NXC5-2 Q9NXC5 MIOS WD repeat-containing protein mio 0 102.6 0.00061066 83766000.0 39447.0 53656.0 43226.0 57784.0 42918.0 48852.0 50049.0 46395.0 55094.0 49889.0 False True 39234.621734973734 55441.907524263064 49311.84507287261 65099.44847527297 48383.352905084146 45474.97622523848 47627.93866425317 49857.2304890364 41516.821921777126 46705.04130787821 0.8400511087516292 1.187064735877048 1.0558141839081232 1.3938420061795769 1.0359342706955885 0.9736631196934143 1.0197601229017494 1.0674914119094567 0.8889152168413577 1.0 15.511290661333133 3.0184271009723296 24.999133577136472 1.0028727080583921 1.1314356790466664 0.16520289542087974 0.13449303877689797 426.1441546949325 578124.4279606884 0.03791945419891773 0.04531561022397579 1043.3429864253071 -3.0184271009723296 0.1285629709882743 LYEAMCEFHEAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYEAMCEFHEAEK 13 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 0 107.45 0.0012944 93776000.0 145550.0 149110.0 121870.0 134690.0 112110.0 149310.0 155420.0 154910.0 210340.0 156000.0 False True 144766.37497212522 154073.03621110145 139028.23668697037 151741.74018992326 126386.54397196954 138988.5511379341 147901.7408379433 166470.17081704104 158504.52541159827 146043.94644168045 0.9912521436137348 1.054977217235274 0.9519616531486181 1.0390142411723864 0.865400771831644 0.9516899161132722 1.0127207901561652 1.1398635470557992 1.0853207494970953 1.0 17.156043033770857 1.9493036821425007 6.337511914848154 1.0880280410953562 0.9764708639017551 0.3592287175525988 0.05856814209413907 0.2146522824948064 20.324099705739798 0.025375782205751176 0.01579800302120485 88.98231127144335 -1.9493036821425007 -0.11155717719360114 LYEEGSNKR ddPTM_BT-474_Trastuzumab_2h_R1 4 LYEEGSNKR 9 1 P25788-2;P25788 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 ;;; 117.89 0.001729 7296700000.0 4094570.0 4020090.0 3621690.0 3426140.0 3449650.0 4000230.0 4230970.0 3723000.0 5176350.0 4250060.0 False True 4072525.290069489 4153896.265454277 4131592.4717062023 3859888.972709948 3888942.4798225365 3723703.515628545 4026301.8172250213 4000829.1650109435 3900707.90203635 3978817.532140568 1.023551660052756 1.0440027047984577 1.0383970710723804 0.9701095718841278 0.9774116174989107 0.9358819512452551 1.0119342705969498 1.0055322046544148 0.980368632269951 1.0 21.923908308136667 3.7466712114022855 24.863768542539606 0.9841823164426514 1.036185706234184 0.57162941691975 0.020719934599642238 434.45862727658954 1331867.4479273236 0.0058118532109314195 0.01024831252449541 5580.475572135023 -3.7466712114022855 0.05200338979153252 LYEHIVADDR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYEHIVADDR 10 0 P48449-2;P48449;A0A0G2JQD0;P48449-3 P48449-2 LSS Lanosterol synthase 0 ; 162.36 6.7925e-06 1583210000.0 421880.0 550670.0 454610.0 431380.0 507710.0 599230.0 498050.0 447930.0 501270.0 485370.0 False True 419608.6449552749 568998.7180629558 518615.1364590436 485992.6637696117 572363.8590670646 557806.6405356927 473957.4187642363 481356.81114245276 377738.72517387057 454393.2710538364 0.9234481927562694 1.2522164264081739 1.1413354235115825 1.0695419468745422 1.259622216102868 1.2275856093599675 1.0430555401162223 1.059339655330023 0.8313035188611236 1.0 18.793581945086757 1.604384481569172 2.0541682497619407 0.9232959547691005 1.14724538315661 0.3829204570484488 0.10601067112573827 0.27829199581269604 2.5009007397488046 0.07756764613573555 0.028357082447627777 40.21466743684229 -1.604384481569172 0.22394942838750953 LYEIAR ddPTM_BT-474_Trastuzumab_2h_R1 6 LYEIAR 6 0 Q7Z5M8-2;Q7Z5M8 Q7Z5M8-2 ABHD12B Abhydrolase domain-containing protein 12B 0 ;;;;; 122.17 0.044989 1871740000.0 1645440.0 2059810.0 1739650.0 2134830.0 1907110.0 1895680.0 1867510.0 1515580.0 1869970.0 2208590.0 False True 1636581.1338655697 2128369.530668562 1984577.59869113 2405099.259110951 2149969.1541734226 1764636.103550725 1777171.4067190022 1628680.2755593013 1409140.949814235 2067635.8953309702 0.791522887352272 1.029373467289254 0.9598293409263217 1.1632121808980116 1.0398199987862338 0.8534559240026429 0.8595185500174958 0.7877016834719807 0.6815227734226733 1.0 20.97955072294179 2.6249332728651353 4.144242202262832 0.8175994236030171 1.005383757607226 0.3277673779164034 0.11369970045245777 0.24973869136917767 7.315305774922558 0.03772749585945704 0.03537360094198421 421.63171688612516 -2.6249332728651353 0.1877843340042089 LYELIITR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYELIITR 8 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 84.49799999999998 0.040502 129640000.0 73173.0 88452.0 94786.0 84553.0 76491.0 77573.0 83649.0 66815.0 88145.0 86546.0 False True 72779.04469828466 91396.07134963696 108131.04490531879 95257.40113058564 86231.67545232279 72210.56109720012 79602.57829978841 71801.07457969533 66422.84583248712 81022.5601842417 0.8982565415458158 1.1280323793991003 1.3345794635399524 1.17568984384071 1.0642921583351082 0.8912401796857137 0.982474240739563 0.8861861982196425 0.8198068004941405 1.0 16.30603605216641 2.903787627313338 3.3060019359413886 0.9125315223042486 1.1467901586820837 0.4685374577487269 0.11007561867221426 0.22162146800543467 4.594022824870128 0.03632459506580552 0.03963742213267005 801.2861336941662 -2.903787627313338 0.23425863637783506 LYENFISEFEHR ddPTM_BT-474_Trastuzumab_2h_R1 6 LYENFISEFEHR 12 0 Q9UNM6;J3KNQ3;A0A087WUL9;E9PQG3;E9PPD2 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ;;;;; 226.59 1.4952e-11 2049812000.0 1182862.0 1474820.0 1409920.0 1349159.0 1327714.0 1429243.0 1486544.0 1286483.0 1619237.0 1479086.0 False True 1176493.6024203226 1523908.4921524834 1608424.4807556707 1519962.3910676108 1496790.5079225705 1330442.7954861321 1414634.1875704522 1382486.8940883079 1220197.7380141674 1384689.4651707665 0.8496443657677657 1.1005416957978718 1.161577755310872 1.0976918863755216 1.0809575327692547 0.9608239456938857 1.0216255869296968 0.9984093393227434 0.8812067750249597 1.0 20.401131038529943 2.7405832367925154 24.901858286570423 0.9785921470773612 1.0683917270021097 0.19868548241724826 0.08431285713191815 281.41927079250775 3464764.4702582913 0.026614433248709147 0.026971594293262843 550.2793768385303 -2.7405832367925154 0.08979957992474852 LYEQLSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYEQLSGK 8 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ; 154.49 0.00098687 922650000.0 1184490.0 1209270.0 1085240.0 915820.0 933730.0 1135360.0 1141010.0 1074820.0 1378790.0 1108520.0 False True 1178112.8374492095 1249519.8209308495 1238032.3589248196 1031762.7180988602 1052634.9808486938 1056875.2355499617 1085814.9872185155 1155028.5262253704 1039005.6793394393 1037773.3045482804 1.135231396188222 1.2040392785732117 1.1929699419891202 0.9942081893771236 1.014320734822604 1.0184066509689185 1.0462930415146365 1.112987317329509 1.0011875183007288 1.0 19.985059899221586 3.745760465639024 24.968247375487426 1.036417137837977 1.1800761237172528 0.7720262487194666 0.03724730976092525 285.12367173431977 988772.9912187805 0.010621897744065524 0.018634470812208752 5568.785188417236 -3.745760465639024 0.14365898587927584 LYEWTTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYEWTTEK 8 0 Q16531;F5GY55;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 114.5 0.0061527000000000005 67036000.0 153250.0 167070.0 180800.0 136590.0 118460.0 156020.0 160850.0 142770.0 201200.0 161750.0 False True 152424.91902767564 172630.82395405238 206255.06845822802 153882.2799951117 133545.17883257056 145234.70463157503 153069.0709933289 153424.22237137042 151616.95594187287 151426.97651885793 1.0065902557903441 1.1400268824132127 1.362076118798701 1.0162144390167362 0.8819114130297617 0.9591072077800369 1.0108441343294368 1.013189498320755 1.0012545943092992 1.0 17.208262716901118 3.5022878965184474 24.70818440903714 0.9793913880909777 1.1703664701587873 0.48921872036789626 0.08800217272329658 538.2672665114643 528460.3341709648 0.02373960698830009 0.03659420009219929 3178.980738452997 -3.5022878965184474 0.19097508206780955 LYFHSDTCLPLRPQEMEVDS(ph)EDEKDPEWLR ddPTM_BT-474_Trastuzumab_2h_R1 6 LYFHSDTCLPLRPQEMEVDSEDEKDPEWLR 30 2 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 LYFHSDT(0.013)CLPLRPQEMEVDS(0.986)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR;LYFHS(0.001)DT(0.003)CLPLRPQEMEVDS(0.995)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR 299.37 1.7597e-81 2647000000.0 1321302.0 1035872.0 961269.0 914032.0 940812.0 1322524.0 1239150.0 1209304.0 1864482.0 1293133.0 True False 1314188.2568424514 1070350.3733221525 1096607.3197000686 1029748.3574821886 1060618.8315703906 1231101.0287666265 1179207.5804873086 1299548.4052012863 1405005.3938788031 1210604.1448331403 1.0855639826209156 0.8841456374409496 0.9058347638907315 0.850606998065516 0.8761070545620654 1.0169311199048565 0.9740653751436155 1.073470969637565 1.1605820117792984 1.0 20.20729576495294 2.087719290827532 1.4811171891185173 1.0860384978456101 0.918324194577121 0.42133846774928885 0.07470342636490881 0.3623088467973537 1.5032708046426317 0.04723759211395124 0.024343732229970404 122.38249160643272 -2.087719290827532 -0.16771430326848913 LYFLQCETCHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYFLQCETCHSR 12 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 ; 237.27 4.2336999999999997e-16 1104460000.0 950020.0 1236530.0 1259760.0 1243710.0 942430.0 1052410.0 1139740.0 985110.0 1542440.0 1083650.0 False True 944905.197877144 1277687.1535518314 1437123.2579697876 1401163.5584795412 1062442.8742797547 979659.373806666 1084606.4219703872 1058623.9104872223 1162326.3296370911 1014490.5292405579 0.9314085944050112 1.2594372413789816 1.4165960317496609 1.381149964532882 1.0472674151774424 0.9656663572207359 1.069114388660008 1.0435029997566387 1.1457241799065412 1.0 19.952323966226082 3.2155146309476716 24.568062946776486 1.0450872365892332 1.2601291659069476 0.368949344454637 0.12893351688724813 200.02611927532905 213236.1885068183 0.03859529723572377 0.046160657086220226 1642.5349941072636 -3.2155146309476716 0.21504192931771438 LYFSMDDGQTR ddPTM_BT-474_Trastuzumab_2h_R1 3 LYFSMDDGQTR 11 0 Q14451;Q14451-3;Q14451-4 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ;; 119.22 0.0019862 130580000.0 295409.0 403740.0 385100.0 411080.0 380810.0 394790.0 383390.0 348698.0 387860.0 386180.0 False True 293818.5507670252 417178.24183401617 439318.7326507946 463122.6858510181 429303.89626229357 367499.0965356978 364843.9610079725 374719.61541256635 292277.1000577278 361533.6617746684 0.8127003978682138 1.1539125839242852 1.2151530523998815 1.2809946481267538 1.1874520733559357 1.016500357758519 1.0091562683736135 1.036472270861783 0.8084367541960564 1.0 18.463770454709945 2.5916381665577406 4.120194685897147 0.9788514585796257 1.1439622843156325 0.2639888090128639 0.13022712895121624 0.33782299615431993 9.768129274336733 0.04504638823460451 0.04187701986223902 390.51540141695284 -2.5916381665577406 0.16511082573600677 LYGDVPFIEER ddPTM_BT-474_Trastuzumab_2h_R1 4 LYGDVPFIEER 11 0 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 0 ;;; 152.54 7.6534e-05 349050000.0 443793.0 525410.0 466924.0 488914.0 448140.0 502282.0 497738.0 462856.0 546690.0 493263.0 False True 441403.6677980379 542897.9542329477 532662.8406238373 550810.4622705184 505207.97266611736 467560.4275846481 473660.5113961926 497396.6650551447 411965.57477068895 461782.53303629876 0.9558691293404573 1.1756571879479745 1.153492829452618 1.1927918941603224 1.0940387228254151 1.0125121548239573 1.0257220174219108 1.0771231683118825 0.8921203062011575 1.0 18.816854078517892 2.8371948342624598 3.8551228835136633 1.0138640759395374 1.1274462295964507 0.356910841772097 0.07489220817130056 0.2767846918572576 7.475622934958037 0.02343874832984183 0.024880749950152412 687.3767435044784 -2.8371948342624598 0.11358215365691327 LYGPTNFAPIINHVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYGPTNFAPIINHVAR 16 0 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX45;H0Y524 Q99829 CPNE1 Copine-1 0 190.86 7.8921e-10 629980000.0 220350.0 304400.0 274260.0 279640.0 241760.0 246190.0 271340.0 231610.0 343930.0 272780.0 False True 219163.66008318638 314531.7699863144 312873.4240893458 315042.39532786474 272546.70297621354 229171.46476892373 258214.24758054034 248893.9142917495 259173.0599258869 255370.94686129226 0.858216891063288 1.2316662245731345 1.225172353922025 1.2336657681697194 1.0672580664559719 0.8974061755482345 1.0111340023373623 0.9746367680068914 1.0148885889774288 1.0 17.9622348757369 2.998325003331382 11.207260711834591 0.9805862311701522 1.1502877044930908 0.32461856472851813 0.10673735463666152 0.1115288738316914 452.085026743535 0.030914874967524875 0.03562426807374038 996.1506056268405 -2.998325003331382 0.1697014733229386 LYHDPNVNGGTELEPVEGNPYR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYHDPNVNGGTELEPVEGNPYR 22 0 P57740;P57740-2;P57740-3 P57740 NUP107 Nuclear pore complex protein Nup107 0 139.95 1.3327e-07 305620000.0 176390.0 178820.0 165540.0 176830.0 175590.0 175200.0 183650.0 158780.0 189370.0 187480.0 False True 175440.33583877143 184771.9156010271 188846.59310052617 199216.65986921184 197950.34569653112 163088.83637643856 174766.14788887085 170628.96986850287 142702.30092799442 175514.86589029664 0.9995753633109813 1.0527422544168792 1.0759578235302436 1.1350415183277394 1.1278266640972594 0.9292024100019834 0.9957341619034494 0.9721624946296706 0.8130496536811229 1.0 17.42123370461291 2.7306104264563453 24.951254912176992 0.9474696417412937 1.0798429155018987 0.5577595728515328 0.060533308734875814 475.0959379152074 1491061.132576777 0.019966265034236565 0.019134429831610313 537.7871568965537 -2.7306104264563453 0.13237327376060504 LYHEADK ddPTM_BT-474_Trastuzumab_2h_R1 4 LYHEADK 7 0 O75663 O75663 TIPRL TIP41-like protein 0 ;;; 113.5 0.0061158 1019660000.0 2030110.0 1762030.0 1580080.0 1483010.0 1432170.0 1713710.0 1912360.0 1731690.0 2532420.0 1879280.0 False True 2019180.1133264224 1820678.1033803702 1802541.529698438 1670758.9139435585 1614548.3603633505 1595245.2613394198 1819851.840875364 1860917.501143645 1908339.0236894544 1759342.7414674473 1.1476900240837937 1.03486265664288 1.0245539355196698 0.9496494767983628 0.9176997308760171 0.9067279636535427 1.0343930139260111 1.0577344921385106 1.0846886048466777 1.0 20.74660513413958 -1.658046597664558 7.408658660526288 0.9999590559262916 1.0139838669492247 0.0031981732036217014 0.07118158084609447 5.181078422652739e-05 2.39145343382127e-06 0.07417427486797244 0.017432006201777192 0.021976240658675355 1.658046597664558 0.01402481102293307 LYHNEVEIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 LYHNEVEIEK 10 0 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 ;;; 128.01 0.0003408 1974480000.0 3886000.0 4228920.0 3859540.0 3863850.0 3797490.0 4690930.0 4706130.0 4160580.0 6659500.0 4827020.0 False True 3865078.2077751886 4369677.0457638735 4402929.684276935 4353013.0138305295 4281077.842013331 4366657.050361457 4478476.512737555 4471063.606597154 5018355.457728148 4518955.450980268 0.8553034544602031 0.9669661702055476 0.9743246491447122 0.963278585294807 0.9473600455797067 0.9662978751902115 0.9910424126367672 0.9894020100656834 1.1105122659794198 1.0 22.107557903946137 1.7406324938392714 1.4512485912574717 1.0486767389482738 0.9481898799423496 0.4750544546565908 0.04274225354487992 0.3453134886773518 1.3972401879313 0.03258962388566272 0.012709172762424371 55.03417922623821 -1.7406324938392714 -0.10048685900592425 LYIGHLTTLCHDRDPLILR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYIGHLTTLCHDRDPLILR 19 1 G8JLD3;X6RLX0;Q8IUD2-3;Q8IUD2;K7EP25 G8JLD3 ERC1 ELKS/Rab6-interacting/CAST family member 1 0 168.89 9.7915e-12 132840000.0 59827.0 80247.0 78426.0 88906.0 75019.0 72108.0 83009.0 64366.0 83611.0 79395.0 False True 59504.898079404586 82917.97288466406 89467.69910898794 100161.49048426242 84572.22497755048 67123.34368397394 78993.53754482591 69169.31776392536 63006.189379999676 74327.94312652071 0.8005723766378897 1.1155693188431361 1.2036886175727532 1.347561714626866 1.137825445184081 0.9030701087707603 1.062770395924497 0.9305964197904096 0.8476783660318813 1.0 16.181617064489917 2.7488673541295845 23.341659750047942 0.9529440299324895 1.1379151446996276 0.2756138676744059 0.13817420459773283 381.94281526790087 864984.314429362 0.04421151756267329 0.04635282764265014 560.8766422110983 -2.7488673541295845 0.18497111476713812 LYIWSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYIWSGR 7 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 143.02 0.0056997 236460000.0 300350.0 296430.0 229020.0 215730.0 192040.0 258950.0 212240.0 192900.0 353490.0 264620.0 False True 298732.94897202234 306296.4933542811 261264.02532247498 243041.3958807046 216495.15568974247 241049.39600273297 201973.14036446487 207295.17752635223 266377.12602332374 247731.72504741998 1.205872800162514 1.236403990226326 1.054624817521715 0.9810669014401866 0.873909692625366 0.9730259455327819 0.8152897668871593 0.8367728335427063 1.075264486098156 1.0 17.91841910942313 3.962244661180857 1.678034129104981 0.9103187240490468 1.234839949823977 0.6783806531838605 0.07700912643911612 0.20564722576051486 1.101277341855459 0.022073915292195358 0.06597858347781868 9167.367912722013 -3.962244661180857 0.32452122577493026 LYKDDQLLDDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 LYKDDQLLDDGK 12 1 B8ZZU8;Q15370;Q15370-2 B8ZZU8 TCEB2 Transcription elongation factor B polypeptide 2 0 ;;; 186.13 1.1084e-05 6886550000.0 11556100.0 8937300.0 7997070.0 7487930.0 7608650.0 11336300.0 10494200.0 9707100.0 15853600.0 10512600.0 False True 11493883.241603404 9234772.62778807 9122987.944221484 8435901.170245234 8577566.477498217 10552648.263779797 9986555.454262942 10431493.093655024 11946692.70735626 9841676.86771033 1.167878543067576 0.9383332486851444 0.9269749522211199 0.8571609577959909 0.8715553856112115 1.0722408798445824 1.0147209249500913 1.0599304604157274 1.2138879245824765 1.0 23.23047271848834 2.714789132540947 23.511100375567835 1.0696804848046881 0.9448988052969755 0.27888405300973407 0.09588266491799995 492.92746524308 487526.85414429713 0.031581941701787214 0.02979617738951561 518.5482017626081 -2.714789132540947 -0.12478167950771268 LYKEELEQTYHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 LYKEELEQTYHAK 13 1 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ;;; 173.25 1.3214e-05 4339790000.0 4344690.0 4169510.0 3910110.0 3764940.0 4279530.0 5494830.0 5055220.0 4898040.0 7019180.0 5490250.0 False True 4321298.671780436 4308289.619827976 4460619.50071462 4241581.017972006 4824502.778738397 5114985.33553851 4810679.695784255 5263556.616543156 5289397.141193222 5139857.544560498 0.8407428871941518 0.838211873087306 0.8678488580749257 0.8252331861728083 0.9386452322679955 0.9951609147128387 0.9359558419815329 1.024066634320161 1.02909411308315 1.0 22.293296943800883 3.0477151023466447 2.8888672099081196 0.995188389401147 0.8439733200238255 0.8835426110518767 0.0262464273710636 0.08602482864109123 1.4634589300739786 0.008495437826329789 0.010122258713597176 1116.1308245345222 -3.0477151023466447 -0.15121506937732143 LYLEDDDPVQAEAYINR ddPTM_BT-474_Trastuzumab_2h_R1 3 LYLEDDDPVQAEAYINR 17 0 D6RFN0;Q9BT78;D6RAX7;Q9BT78-2;D6RD63 D6RFN0 COPS4 COP9 signalosome complex subunit 4 0 ;; 252.04 1.3058000000000002e-26 250050000.0 126099.0 166901.0 146988.0 156554.0 160093.0 158076.0 169751.0 151286.0 185921.0 158539.0 False True 125420.09699491606 172456.19889121476 167682.6327574008 176373.72034815687 180479.89460444666 147148.57819087835 161539.49561820712 162575.7295347421 140103.2607637622 148420.90528793348 0.8450298612018549 1.1619400822050863 1.1297777252611414 1.1883347565223075 1.2160004970615117 0.9914275748784389 1.0883877530919506 1.0953694779003575 0.9439590770044475 1.0 17.17933478628161 1.2471799273582802 24.52472441154633 0.9719795351267932 1.0972475092690406 0.17205434414253729 0.10203255509446665 208.6702140136165 593749.5219900614 0.06899941557042227 0.024301454878022287 17.66769638301634 -1.2471799273582802 0.12526797414224733 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR ddPTM_BT-474_Trastuzumab_2h_R1 4 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR 31 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 237.97 4.8137999999999985e-46 2807140000.0 479983.0 703641.0 643461.0 688475.0 529975.0 617595.0 734754.0 366487.0 680115.0 516742.0 False True 477398.82485912414 727061.2653250329 734054.7157367256 775635.8644090674 597464.1748420707 574902.1113122528 699211.141987146 393836.1209232779 512509.7713240908 483763.08315491606 0.986844266300176 1.5029283768067212 1.5173847308676474 1.6033382691185731 1.235034659829022 1.188395996575355 1.4453586194034502 0.814109498299934 1.059423071272202 1.0 18.883941153259713 1.748153850099414 13.198555043959043 0.9551995090434008 1.3648056593286686 0.49970162490114844 0.1814933833831614 0.09686160499838428 112.36347348965721 0.0856503575301803 0.04710233158298678 55.99559324017668 -1.748153850099414 0.4096061502852678 LYNNHEIR ddPTM_BT-474_Trastuzumab_2h_R1 8 LYNNHEIR 8 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;;;; 160.56 0.00035263 8764790000.0 4753100.0 6451540.0 5841540.0 5694860.0 4906370.0 5380060.0 5373850.0 4865580.0 6857300.0 5195050.0 False True 4727509.837719052 6666275.608861715 6663978.056424108 6415828.692092846 5531167.137166635 5008149.115498983 5113896.345399447 5228674.286514616 5167410.29811236 4863497.461293924 0.9720391293185352 1.3706752521030752 1.3702028446522867 1.3191800228442863 1.1372817979625467 1.029742311033627 1.0514853531020256 1.075085229945517 1.0624885361279865 1.0 22.213562734052427 3.0485699955356744 4.003678338411125 1.0528455856573098 1.2731269525416529 0.4633483578461991 0.10774629062874355 0.18883910522822686 6.4039153405419 0.03208983504358715 0.038080527720733934 1118.3300520717603 -3.0485699955356744 0.22028136688434308 LYNSEESRPYTNK ddPTM_BT-474_Trastuzumab_2h_R1 4 LYNSEESRPYTNK 13 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 0 ;;; 146.59 3.8635e-05 1968420000.0 1289500.0 1341540.0 1261550.0 1253930.0 1260450.0 1571550.0 1426130.0 1420890.0 2036350.0 1546810.0 False True 1282557.47527692 1386192.3479219454 1439165.2744108287 1412677.4094316592 1420960.8362275355 1462912.4475307758 1357142.6435543431 1526924.0269332256 1534518.8281920142 1448091.2615093314 0.8856882914548652 0.9572548255536951 0.9938360327585989 0.9755444611683101 0.9812646992610686 1.0102349806365079 0.9371941393664697 1.0544390864852866 1.059683784427095 1.0 20.465721096039516 7.2985278353685565 0.38723674080258125 1.019130659287367 7.433998532548056e-16 0.5529877101489487 0.03299750447324325 31.797825052484274 0.729087889368301 0.02512798853117363 22.51488321949588 19885102.565062474 -7.2985278353685565 -1.0191306592873663 LYPELSQYMGLS(ph)LNEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYPELSQYMGLSLNEEEIR 19 0 B4DHN5;E9PBU7;O00560-2;O00560;G5EA09;O00560-3 B4DHN5 SDCBP Syntenin-1 1 LYPELSQY(0.002)MGLS(0.998)LNEEEIR 77.969 0.011332 19968000.0 7541.7 7811.9 8166.2 6946.4 9678.7 7679.5 7095.8 6777.9 12470.0 7820.9 True False 7501.096325161644 8071.914369106729 9315.929978117158 7825.813527769557 10911.225074850594 7148.634240598519 6752.549045411646 7283.701315478817 9396.93558943915 7321.763466190636 1.024493123794439 1.1024549490542859 1.2723615043199485 1.0688427130849623 1.4902455023622174 0.9763541629838811 0.9222571961785676 0.9948015050079703 1.2834251793069988 1.0 12.837975451958494 LYPLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYPLRK 6 1 P42766 P42766 RPL35 60S ribosomal protein L35 0 ; 106.05 0.052039 1920250000.0 1494130.0 1698730.0 1641060.0 1498320.0 1442190.0 1657460.0 1695510.0 1509460.0 2080260.0 1785520.0 False True 1486085.7700934487 1755271.20114603 1872106.9836507763 1688007.1583737885 1625844.3479701604 1542883.691441166 1613491.7038228125 1622103.5700825725 1567607.7970558696 1671566.5849394188 0.8890377347111827 1.0500755500623058 1.119971528815064 1.0098354283834678 0.972647074079364 0.9230165913475014 0.9652572134189252 0.9704091866261858 0.9378075699644852 1.0 20.67276939352784 3.2524279422427655 3.8948165840836 0.9585102913342354 1.028395912213237 0.18453544595983884 0.05661993278907469 0.31826799178019405 10.579914014783471 0.016563878919949787 0.021723875094861383 1788.248799828929 -3.2524279422427655 0.06988562087900152 LYPPGDEEEAELADSSGLYHEGSPS(ph)PGSPWK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 LYPPGDEEEAELADS(0.004)S(0.004)GLYHEGS(0.102)PS(0.843)PGS(0.047)PWK 101.58 0.00012465 60350000.0 8668.6 11451.0 10908.0 10073.0 8494.6 9759.2 11879.0 10608.0 12748.0 12731.0 True False 8621.929220772006 11832.139612724328 12443.751585964346 11348.240767192041 9576.336958561165 9084.569474685726 11304.367387813218 11399.62282633254 9606.426214448296 11918.49668044254 0.7234074440713667 0.9927543657531979 1.0440705669183694 0.9521537045702877 0.803485306521526 0.7622244414090328 0.9484725876848992 0.9564648237087284 0.8060098913491164 1.0 13.540914654909454 -1.2030419157701713 3.4776232319701705 1.0001683977887725 0.8982135761844262 0.0893335111322836 0.10274537933874338 31274488.80050919 35550991.464960456 54042.6876469155 0.026124608746906534 0.06265533901869472 1.2030419157701713 -0.10195482160434632 LYPPGDEEEAELADSSGLYHEGSPSPGS(ph)PWK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 LYPPGDEEEAELADSSGLYHEGSPS(0.003)PGS(0.997)PWK;LYPPGDEEEAELADSSGLYHEGSPS(0.004)PGS(0.996)PWK 158.54 1.4705e-12 181728000.0 53720.0 55541.0 46550.0 55942.0 57617.0 68774.0 67191.0 57804.0 93545.0 77779.0 True False 53430.7774888531 57389.64860975649 53103.83538014668 63024.25146413755 64954.183427285396 64019.815256582166 63940.71463545397 62117.62800276452 70492.08818877995 72815.07763004789 0.7337872763154802 0.7881561137836934 0.7292972432159138 0.8655384779556967 0.892043043026042 0.879210973060389 0.8781246510553493 0.8530874377195066 0.9680974117329055 1.0 16.15194959604257 7.999999999991955 0.1243412695935304 1.0443590299932115 0.016644568902235153 0.8028318057233867 0.03747997798235196 40.934505857899694 0.34717630701760954 0.23993509781865388 7.329868082814116 99999999.99814755 -7.999999999991955 -1.0277144610909763 LYPTTQPPEQGLDPTRSS(ph)LPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYPTTQPPEQGLDPTRSSLPR 21 1 P85299;P85299-5;P85299-2;P85299-4;P85299-3 P85299 PRR5 Proline-rich protein 5 1 LYPTTQPPEQGLDPT(0.001)RS(0.085)S(0.914)LPR 157.56 2.7002e-09 335180000.0 111700.0 137420.0 117770.0 137160.0 93218.0 162720.0 141930.0 119090.0 153530.0 129360.0 True False 111098.61961103669 141993.94162785585 134350.99232480951 154524.4419366682 105088.75975362619 151471.54940167858 135064.3036747479 127977.10052676684 115694.58869659937 121104.13404933202 0.9173809010168096 1.1724945869313952 1.1093840303592062 1.2759633942283288 0.8677553460794168 1.2507545724242273 1.11527409642126 1.0567525339360844 0.9553314558978717 1.0 16.885888588607546 1.449602814359503 3.4287584178712454 0.9793355306538146 1.107160864744263 0.13708109126145085 0.121677803580318 0.41817452566342866 9.155078243012964 0.08439836311541685 0.029730648373401163 28.158065469286537 -1.449602814359503 0.12782533409044838 LYPWGVVEVENPEHNDFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYPWGVVEVENPEHNDFLK 19 0 Q15019-2;Q15019-3;Q15019;B5MCX3;H7C2Y0 Q15019-2 SEPT2 Septin-2 0 ; 288.82 2.8726e-41 371040000.0 574670.0 544420.0 482510.0 504240.0 489820.0 587550.0 584050.0 564700.0 763670.0 640700.0 False True 571576.0405718387 562540.6905911597 550443.2139478963 568076.7322991084 552195.6736094026 546934.0514439304 555797.2702123327 606840.7814884983 575473.7611537285 599809.9774691334 0.9529285307716515 0.9378648434038569 0.917695994772315 0.9470945026557881 0.9206176861868206 0.9118455377346167 0.9266222488620313 1.0117217190167975 0.9594267897675021 1.0 19.194145995185508 1.7500263219461796 24.999999999978776 0.9894370133967565 0.9299663938987317 0.7159016241754822 0.01723173248488646 1.5792392095001841 3449.48140164162 0.0076973498273674905 0.004268573023243777 56.23754088991763 -1.7500263219461796 -0.05947061949802479 LYQEVEIASVDAFQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYQEVEIASVDAFQGR 16 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 144.27 2.8149e-05 0.0 17333.0 19015.0 18416.0 17808.0 18903.0 20830.0 17478.0 15887.0 21960.0 19120.0 False True 17239.681053877335 19647.90278018977 21008.81272525846 20062.490974104636 21310.185003140996 19390.071128545773 16632.522367556143 17072.568612551375 16548.252248924113 17899.745230544446 0.9631243814833317 1.097663822983482 1.1736933936583995 1.1208255042574373 1.1905300733988613 1.083259615084253 0.929204419020116 0.9537883580274896 0.9244965241564377 1.0 14.127651433114634 2.3100437501478166 4.973301654326175 0.9479245164227148 1.1145788093438864 0.6064739807157462 0.06039454321989622 0.13308700245936322 6.1178857217495874 0.02198967518259318 0.017994552892044782 204.19436365216097 -2.3100437501478166 0.16665429292117162 LYQPEYQEVSTEEQREEISGK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYQPEYQEVSTEEQREEISGK 21 1 A0A494C039;Q9Y4L1;A0A087X054 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 152.51 4.729e-08 350190000.0 129880.0 151450.0 144330.0 148350.0 151720.0 160710.0 227240.0 179390.0 225440.0 167310.0 False True 129180.74051102456 156490.92169654174 164650.40946115073 167131.09478933198 171040.64268510573 149600.49597064755 216247.53305890018 192776.99272396252 169883.33274123177 156632.13255870235 0.8247397159239367 0.9990984553433971 1.051191775094062 1.0670294278646488 1.0919894908600787 0.955107317552358 1.3806077305233349 1.2307627405361021 1.0846007774143225 1.0 17.25702068149568 5.887042057422742 0.4723193098829867 1.1693589308584276 3.200792316189501e-09 0.37057513926783403 0.11404547281148618 12.85125028019731 0.9606093212423674 0.0700411899092014 10.556540918546078 770978.1275839141 -5.887042057422742 -1.1693589276576353 LYQTDPSGTYHAWK ddPTM_BT-474_Trastuzumab_2h_R1 3 LYQTDPSGTYHAWK 14 0 O14818;H0Y586;O14818-2;Q8TAA3-2;Q8TAA3-5;Q8TAA3;A0A087WYS6 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 0 ;; 202.4 1.6496e-08 4865380000.0 7527230.0 8998880.0 9034990.0 8021800.0 7010860.0 8870590.0 8883030.0 7968040.0 11800260.0 9691680.0 False True 7486704.23003388 9298402.280862171 10307038.058459118 9037359.057506321 7903651.464377144 8257386.992422797 8453323.902430035 8562655.605687289 8892244.038382938 9073148.684935298 0.8251495142435517 1.0248263975108085 1.1359935140898243 0.9960554347038971 0.8711034877561369 0.9100905627318816 0.9316858122765699 0.943735841109315 0.9800615362059781 1.0 23.113171870225145 3.4497179827327424 23.854490347419762 0.9351728444018913 1.0095653070855617 0.10023566869924738 0.0782708243517338 232.74747917482708 202604.99927157635 0.021959591834814097 0.029734299604481935 2816.553355546648 -3.4497179827327424 0.07439246268367039 LYQVEYAMEAIGHAGTCLGILANDGVLLAAER ddPTM_BT-474_Trastuzumab_2h_R1 1 LYQVEYAMEAIGHAGTCLGILANDGVLLAAER 32 0 P25789;H0YMZ1;H0YL69;H0YLC2;H0YMI6;H0YMA1;H0YLS6 P25789 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type 0 147.3 4.0446e-10 75193000.0 14800.0 19396.0 17694.0 18008.0 18548.0 19556.0 19692.0 15088.0 22427.0 20630.0 False True 14720.318444434582 20041.5841348704 20185.161400994963 20287.810953598164 20909.977857390848 18204.139749872335 18739.422729254806 16213.943175311582 16900.166356403523 19313.375737768412 0.762182574620974 1.0377048739168853 1.0451389583604342 1.0504539045405816 1.0826682057709978 0.942566436703921 0.9702820979456632 0.8395188596473214 0.8750498403732849 1.0 14.23731273102037 2.0949277074387567 2.420326938693814 0.8908044871743944 1.0011067302114658 0.11029621060346118 0.0940343779537415 0.47092186527254026 5.3975273947972005 0.04588264275665852 0.027775094323754204 124.43074673916341 -2.0949277074387567 0.11030224303707137 LYSESLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 LYSESLAR 8 0 P50395;P50395-2;Q5SX87;Q5SX91;P31150 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 ;;; 181.33 0.00054531 1897900000.0 2307190.0 3185490.0 3095350.0 2907470.0 2815790.0 2897930.0 2802090.0 2619950.0 3128420.0 3107770.0 False True 2294768.3453929066 3291517.1089806324 3531148.374735493 3275555.4038903816 3174364.166005101 2697602.9200934554 2666542.201676703 2815463.9728365326 2357462.8096802887 2909429.4579042383 0.7887348288024508 1.1313273466859117 1.2136910091228335 1.1258411490237252 1.0910607086145696 0.9271931006145209 0.9165172210765697 0.9677031230943155 0.8102835431447271 1.0 21.472304836219223 2.7366118031927553 22.748617407210414 0.9255069105009547 1.08460136982505 0.287915645655513 0.11349745756305075 61.20327249826941 714423.3260076295 0.03596045474901228 0.03553423363697298 545.2702500130812 -2.7366118031927553 0.15909445932409538 LYSEVSLTIDHSLIPEERLS(ph)PTPSMQDGLDLPSETDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYSEVSLTIDHSLIPEERLSPTPSMQDGLDLPSETDLR 38 1 Q9UK58;Q9UK58-6;Q9UK58-5;Q9UK58-4 Q9UK58 CCNL1 Cyclin-L1 1 LY(0.001)S(0.002)EVS(0.002)LT(0.002)IDHS(0.017)LIPEERLS(0.892)PT(0.062)PS(0.019)MQDGLDLPS(0.001)ET(0.001)DLR;LYSEVSLTIDHS(0.013)LIPEERLS(0.328)PT(0.328)PS(0.328)MQDGLDLPS(0.001)ET(0.001)DLR 45.187 0.043713 114369000.0 11347.3 16127.6 12666.2 12068.7 16484.6 12188.900000000001 15625.8 10634.8 15193.9 12977.7 True False 11286.207397603554 16664.397416659933 14449.490863415978 13596.596182568312 18583.816098120846 11346.310032584324 14869.920357647246 11428.422778420174 11449.566932829155 12149.45207523204 0.9289478511225783 1.3716171983288112 1.1893121413164642 1.1191118824433597 1.5296011690935385 0.9338947931417412 1.2239169524328732 0.9406533486162918 0.9423936867219159 1.0 13.56860363114427 1.94562449460977 1.4205046003043904 0.9507803719099218 1.2122524850875314 0.2401996704951882 0.17343534218449497 0.5354843487247835 2.0085828870428966 0.1159976845087943 0.05262178203638028 88.23166902903792 -1.94562449460977 0.26147211317760954 LYSGS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYSGSPTR 8 0 Q6PJI9-4;Q6PJI9-3;Q6PJI9;H3BMH3 Q6PJI9-4 WDR59 WD repeat-containing protein 59 1 LYSGS(0.999)PTR;LYS(0.002)GS(0.997)PTR 152.37 0.00048061 1727590000.0 1471660.0 1640430.0 1750150.0 1716970.0 1621220.0 1805280.0 1843700.0 1609510.0 2044840.0 1838680.0 True False 1463736.7460767988 1695030.7208891246 1996555.9074234937 1934338.2259550996 1827672.7572762112 1680485.242772014 1754513.1873820357 1729619.8091261783 1540916.5814521865 1721333.8682268546 0.8503502853775796 0.9847193227163857 1.1598888189425711 1.123743778972792 1.0617770271138023 0.9762692025011286 1.019275353705414 1.0048136744720297 0.8951875112057628 1.0 20.715095517556474 1.45795742955932 4.282497180496278 0.946635265852593 1.03109766105733 0.11293063556804583 0.0835471197353616 0.41713672363483184 14.910448641763459 0.06011013617452533 0.022745470016911993 28.704991959834157 -1.45795742955932 0.08446239520473686 LYSILGTTLKDEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYSILGTTLKDEGK 14 1 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ; 221.91 3.7286e-12 1785910000.0 1170550.0 1076210.0 943670.0 902270.0 885620.0 1239240.0 1450660.0 1090150.0 1791250.0 1273410.0 False True 1164247.888860331 1112030.999267316 1076530.5334733208 1016497.2894881731 998398.4575190033 1153574.2556571807 1380486.0337406453 1171502.5286695338 1349820.4390202789 1192139.883578849 0.9766034212069264 0.9328024459084087 0.903023670545721 0.8526661203856462 0.8374843181336853 0.9676500816280947 1.1579899747975666 0.9826888142963885 1.1322668233932975 1.0 20.1851220983332 2.4709846558864577 23.051272052852703 1.061262202508968 0.9000683157927089 0.6249548446023137 0.061177085234128015 39.8213101753123 149578.7047631388 0.02079289869921228 0.017456024803002075 295.79079584833084 -2.4709846558864577 -0.16119388671625912 LYSILQGDS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 5 LYSILQGDSPTK 12 0 O15042-2;O15042;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 LYSILQGDS(0.996)PT(0.004)K;LYSILQGDS(1)PTK;LY(0.018)S(0.021)ILQGDS(0.958)PT(0.004)K;LYSILQGDS(0.942)PT(0.058)K;LYSILQGDS(0.997)PT(0.003)K 194.23 1.8811e-06 766751000.0 1425962.0 1188394.0 1027496.0 931044.0 900191.0 1285966.0 1285781.0 1210427.0 1752616.0 1381900.0 True False 1418284.779031272 1227948.9758906574 1172158.505644665 1048914.0749379077 1014824.9879999207 1197070.1972583523 1223582.860869591 1300755.2091637657 1320707.2706512 1293705.9588958872 1.0962960858908823 0.9491716161983592 0.9060470793881503 0.8107824407279557 0.7844324910322147 0.9253031487000271 0.945796726416764 1.0054488813469598 1.0208712896231513 1.0 20.303078319693444 1.926046968165838 2.2850015953430347 1.0114090567302725 0.9032584636531606 0.22677207322420456 0.07916066147177626 0.467802635124292 4.475068773666434 0.049484712218563265 0.025061415745249508 84.34259678310768 -1.926046968165838 -0.10815059307711183 LYSILQGDS(ph)PTKWR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYSILQGDSPTKWR 14 1 O15042-2;O15042;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 LYS(0.001)ILQGDS(0.952)PT(0.048)KWR;LYSILQGDS(0.976)PT(0.024)KWR 122.01 6.7362e-05 520300000.0 161029.0 171660.0 129871.0 152181.0 136159.0 176263.0 187451.0 168562.0 231980.0 173525.0 True False 160162.03775600396 177373.59932933873 148155.70794103175 171447.09899653052 153498.04157237863 164078.35368847143 178383.2789976409 181140.95238049258 174811.637372742 162450.48593777325 0.9859129496070214 1.091862534638904 0.9120053232575918 1.0553806472589033 0.9448912429303298 1.0100207010234596 1.0980778417983357 1.1150533119973476 1.0760918095357603 1.0 17.309640533641094 2.281984953234741 6.367049367414211 1.0860348266178836 0.9996918478459517 0.2759664957264837 0.05570767056004468 0.2006680329949849 20.15897886452526 0.018483112804233377 0.015187671956825721 191.41896039836598 -2.281984953234741 -0.08634297877193198 LYSLLGIDLTAPSNNS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYSLLGIDLTAPSNNSSPR 19 0 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 LYSLLGIDLTAPS(0.027)NNS(0.487)S(0.487)PR 225.54 1.7947e-19 323460000.0 144800.0 198160.0 166500.0 175710.0 176070.0 182720.0 208940.0 194940.0 194780.0 160640.0 True False 144020.4128887925 204755.6358097504 189941.75275605652 197954.86798404777 198491.47085134825 170088.99647661438 198832.7739716888 209487.4126852626 146779.07891828066 150387.81766917685 0.9576601025330963 1.361517435276386 1.2630128935968101 1.3162959011713897 1.3198640284014882 1.131002491510158 1.3221335148906885 1.392981266249192 0.9760037827077543 1.0 17.19832817908466 1.2242177913335675 24.997019703928125 0.9880015638363728 1.270555241262443 0.43791965112347286 0.12172482037605203 227.53252035320767 396537.80486628046 0.10995799621799798 0.028000281392284214 16.75783042182422 -1.2242177913335675 0.2825536774260702 LYSLLGIDLTAPSNNSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 LYSLLGIDLTAPSNNSSPR 19 0 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 LYSLLGIDLTAPS(0.008)NNS(0.201)S(0.791)PR 253.31 7.485999999999998e-31 196140000.0 209340.0 254840.0 239600.0 231650.0 223680.0 231580.0 232050.0 231640.0 261820.0 232310.0 True False 208212.93669986058 263322.1953459667 273333.5973594659 260976.86624839055 252164.3221447697 215571.41968068277 220824.85498291574 248926.15304408624 197297.96920825637 217483.7769094027 0.9573722677558425 1.2107670700222342 1.2567999381090784 1.1999831433730608 1.1594626768405532 0.9912068971033341 1.0153624243655877 1.1445734324716161 0.9071847657420667 1.0 17.730548262316468 2.7548322674121284 19.6725059514486 1.0310811484022193 1.1678172423804696 0.36821887491960015 0.0928375066937086 59.492371399425224 71925.07185017888 0.028782325394992703 0.030349571104436982 568.6332717070106 -2.7548322674121284 0.13673609397825026 LYSSGSS(ph)TPTGLAGGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYSSGSSTPTGLAGGSR 17 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 LYSSGS(0.112)S(0.444)T(0.444)PTGLAGGSR;LYSSGS(0.001)S(0.5)T(0.5)PTGLAGGSR 284.44 3.5812999999999996e-36 304050000.0 498220.0 528610.0 505870.0 497860.0 497350.0 556870.0 542090.0 502640.0 575720.0 477340.0 True False 495537.63887744554 546204.4642985065 577092.0988991366 560889.0249532636 560684.5744755954 518374.8876309789 515867.0357150995 540149.5491542032 433841.5202527591 446875.7525286656 1.1088935483149949 1.2222736660196603 1.291392731947608 1.2551341659945723 1.254676655206593 1.1599977951314933 1.15438582826668 1.2087242283738686 0.9708325363321869 1.0 18.769514240683083 1.2409033913600334 24.996055434473277 0.9854161847377959 1.2092055169808904 0.743884820993624 0.05197814665993401 28.894513106700817 308316.28173759894 0.04116723055833125 0.013406449195604849 17.41419452216988 -1.2409033913600334 0.2237893322430945 LYSSGSST(ph)PTGLAGGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 LYSSGSSTPTGLAGGSR 17 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 LYSSGSS(0.019)T(0.98)PT(0.001)GLAGGSR;LYSSGS(0.005)S(0.176)T(0.806)PT(0.012)GLAGGSR 252.47 6.1251e-26 598210000.0 797870.0 854120.0 770430.0 759750.0 797110.0 871400.0 848880.0 776770.0 850850.0 761330.0 True False 793574.3565716915 882548.8678735573 878899.8473023939 855934.2721010769 898617.2336588752 811162.1690549583 807816.4313634877 834736.5217581386 641169.4183058788 712741.267592594 1.113411545892558 1.2382457814664185 1.233126082724281 1.200904607350914 1.2607902397655593 1.1380878390763 1.1333936564274247 1.171163449785368 0.8995822852681711 1.0 19.44301893300827 1.2752263708065459 7.618705374206572 0.9499917255115048 1.1878919204997553 0.7719029862966857 0.05138036539703051 0.08143952182536246 14.010391490005476 0.03632128677694834 0.01283797834707189 18.84631174985924 -1.2752263708065459 0.23790019498825055 LYTDFDEIR ddPTM_BT-474_Trastuzumab_2h_R1 5 LYTDFDEIR 9 0 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;F8VZ52;B4DDQ3;B4DPZ9;F8VUJ9;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 ;;;; 241.52 4.8783e-10 637218000.0 889874.0 1064438.0 969291.0 912025.0 860129.0 936870.0 929577.0 878846.0 1066010.0 940946.0 False True 885083.0172582958 1099867.1753636415 1105758.7475715966 1027487.2714879704 969661.3297659974 872106.3820547616 884609.8091810113 944429.9512095638 803306.1193021666 880894.0206955997 1.0047553922086885 1.2485805891781727 1.2552687628625656 1.1664141739509288 1.1007695670363415 0.9900241817580974 1.0042182015067798 1.0721266452277571 0.9119214121442604 1.0 19.748608935110443 2.999430231219428 2.6447095029466614 1.0067772068534646 1.1810967550260394 0.5441759867247217 0.07427822626632054 0.21560155238390075 3.0438992145319657 0.023672352925462964 0.027490826034626874 998.6889191179005 -2.999430231219428 0.17431954817257478 LYTDFDEIRQEIENETER ddPTM_BT-474_Trastuzumab_2h_R1 2 LYTDFDEIRQEIENETER 18 1 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;F8VZ52;B4DDQ3;B4DPZ9;F8VUJ9;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 ; 216.96 7.9163e-19 79856000.0 68569.0 90998.0 87949.0 103919.0 95538.0 95408.0 91361.0 78568.0 113070.0 106548.0 False True 68199.83212273213 94026.81342054742 100331.45473358799 117075.13474494501 107704.19800190885 88812.66952627433 86941.51939708763 84431.14312022006 85205.41356037573 99748.01541966783 0.6837211932066651 0.9426434503478619 1.0058491320500509 1.173708912928013 1.079762815819113 0.8903702911041844 0.871611520603195 0.8464443404211562 0.8542066045313553 1.0 16.60600051739886 2.5651142825228272 9.764920236614513 0.8769085672334228 0.9876906312900194 0.09546016449170824 0.12428220093259625 0.9360135793419141 98.8542233535962 0.04253077544583817 0.040068083671042275 367.37896180221486 -2.5651142825228272 0.11078206405659663 LYTLQDK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYTLQDK 7 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 97.798 0.027295 845560000.0 1769720.0 1715650.0 1599430.0 1352640.0 1452200.0 1756020.0 1881120.0 1560640.0 2314300.0 1876610.0 False True 1760192.0241543779 1772754.373117672 1824615.8415052197 1523884.0853106966 1637129.06213624 1634630.470626447 1790123.0390237558 1677102.8815693469 1743971.7750311974 1756843.1431533475 1.001906192373566 1.0090567163188886 1.0385764082672897 0.8673990567965482 0.931858412355338 0.9304362071234533 1.0189430092265803 0.9546116214786965 0.9926735814905778 1.0 20.744553957769636 LYTLVLTDPDAPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 LYTLVLTDPDAPSR 14 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ;;;; 244.12 3.3195e-17 1106581000.0 1346072.0 1498613.0 1343159.0 1300339.0 1228289.0 1416840.0 1373977.0 1291619.0 1701637.0 1515226.0 False True 1338824.8979146585 1548493.4277743108 1532264.112252685 1464961.7840732394 1384704.3235107171 1318897.1856826115 1307512.48340815 1388006.168488386 1282291.3621175995 1418522.9794297563 0.943816150551797 1.0916237877209451 1.0801827918703526 1.032737435569885 0.9761592470411482 0.9297679380652726 0.9217421940769459 0.9784869111153646 0.9039623472529703 1.0 20.43595809113195 3.1633261066499134 3.050173384985738 0.9465456988445222 1.0455461406411295 0.46951134783539183 0.045111051826174114 0.202517884699993 3.8055844613609553 0.013184221498944996 0.016653906377339 1456.5523782132834 -3.1633261066499134 0.09900044179660727 LYTLVLTDPDAPSRK ddPTM_BT-474_Trastuzumab_2h_R1 2 LYTLVLTDPDAPSRK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ; 143.38 7.091e-06 1458700000.0 1037410.0 986450.0 927310.0 818070.0 832900.0 968330.0 984220.0 957980.0 1238280.0 1010930.0 False True 1031824.6998270876 1019283.3919283823 1057867.18767699 921637.5781213939 938964.8780149255 901391.6263036351 936609.5185144803 1029469.3321238735 933122.4861019003 946411.581899282 1.090249442802038 1.0769980116714752 1.1177665277024993 0.9738232242169194 0.9921316433285693 0.9524308911083909 0.9896429169166223 1.087760707722859 0.9859584391700777 1.0 19.852108203489003 3.7405863320522794 24.994029553085294 1.0036027742774487 1.0932039982796264 0.6195871933728275 0.03480429870184544 142.16656226760625 1754088.6555084365 0.010451096446119523 0.01773185917828041 5502.83298748098 -3.7405863320522794 0.08960122400217774 LYTLVLTDPDAPSRKDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 LYTLVLTDPDAPSRKDPK 18 2 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 171.56 7.2943e-12 747970000.0 530800.0 453480.0 448220.0 475580.0 374290.0 555450.0 514080.0 547350.0 848460.0 588340.0 False True 527942.2317774234 468573.80766555126 511325.4800019197 535788.3792376841 421953.61290936085 517053.048888658 489211.9864236896 588196.0363869835 639368.4017815191 550791.6374967846 0.9585153365377764 0.8507278901239431 0.9283464838459984 0.972760555466516 0.7660857285833867 0.9387452780484099 0.888197919356656 1.067910251978757 1.1608171915741035 1.0 19.071147130072536 1.6848872409484872 4.511057109322619 1.0905886794529125 0.8984574429469363 0.5896222071973474 0.06701274712397898 0.10311811544245227 4.896884393977128 0.034708956756228135 0.01666665606938104 48.404667469045286 -1.6848872409484872 -0.1921312365059762 LYVELHR ddPTM_BT-474_Trastuzumab_2h_R1 3 LYVELHR 7 0 A0A087WTZ5;Q04323;E9PJ81;E9PRQ7;Q04323-2 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 0 ;; 148.33 0.0020914 845220000.0 637820.0 781650.0 768600.0 830030.0 702120.0 725190.0 736170.0 659570.0 926710.0 767930.0 False True 634386.0479884646 807666.7477325976 876812.1992090378 935111.712895107 791530.8202087163 675059.3222136387 700558.6446575016 708790.462628597 698334.7377777995 718920.04994205 0.8824152950520723 1.123444460615198 1.2196240726346623 1.3007172535673244 1.1009997847083541 0.9389908130508436 0.9744597395968738 0.985909994700705 0.9713663401571428 1.0 19.455471813995015 2.8575418818569482 5.046692629397535 0.974979471966586 1.1439340699711862 0.3590218886849673 0.10080418159660982 0.2510293261342372 9.38186588794932 0.032663908507924506 0.03480618261907652 720.3472156815332 -2.8575418818569482 0.16895459800460022 LYVYNTDTDNCR ddPTM_BT-474_Trastuzumab_2h_R1 5 LYVYNTDTDNCR 12 0 Q9H8Y8;Q9H8Y8-3;Q9H8Y8-2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 0 ;;;; 348.81 4.272e-71 963956000.0 720552.0 845567.0 697936.0 739299.0 669509.0 730634.0 631015.0 662409.0 757091.0 693701.0 False True 716672.6280928537 873711.1864389544 796199.3222315372 832894.1775979649 754767.0026592567 680126.9913074361 600490.3937386102 711841.323224747 570516.0675496452 649428.4082726944 1.103543699295525 1.345354122655016 1.2260001442641137 1.2825034553281096 1.1622020118687673 1.0472701573317245 0.9246444813459174 1.0961043806476747 0.8784895460102601 1.0 19.30881096897415 2.801242943188104 2.3704227774552042 0.9922237561449662 1.245321807380527 0.6991553975593894 0.0786162565241269 0.16207415557969004 1.791764810731418 0.025578748446885752 0.026473050231408786 632.7657198657669 -2.801242943188104 0.25309805123556084 MAADDVEEYMIERPEPEFQDLNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MAADDVEEYMIERPEPEFQDLNEK 24 1 C9J363;Q9BUL8;C9J6F3;C9J5C3;H7C5M9;C9JSA3;C9JND6 C9J363 PDCD10 Programmed cell death protein 10 0 ; 262.93 3.5079e-44 380690000.0 282770.0 225352.0 218178.0 211633.0 210503.0 297150.0 272170.0 257970.0 350080.0 271060.0 False True 281247.5977387005 232852.70509183957 248895.56596282808 238425.71610077986 237309.30930096764 276608.71991586045 259004.09730963205 277221.0313451173 263807.47483166464 253760.7187338583 1.1083181003820777 0.91760736749825 0.9808277940127813 0.9395690447694482 0.9351695978992528 1.090037580662612 1.0206626880706189 1.0924505287040267 1.0395914550838867 1.0 17.95310923678422 2.738120561527037 24.999990664880748 1.05501928441422 0.971248884047784 0.28993638865582305 0.05579907065713161 43.740741878633756 2484897.3011340285 0.016650379772522213 0.01660716989664216 547.1678373414553 -2.738120561527037 -0.08377040036643613 MADFHKEEMDDQDKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MADFHKEEMDDQDKDK 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 160.25 5.3135e-09 326260000.0 343480.0 171320.0 136940.0 147310.0 140850.0 297990.0 252410.0 243400.0 559390.0 259170.0 False True 341630.7418442159 177022.28263487318 156219.96169618226 165959.43089596543 158786.41261664324 277390.652693008 240199.96400016255 261563.7439601564 421535.82994197006 242629.54871339977 1.4080343620791171 0.7295990268851237 0.6438620626571468 0.6840033778903037 0.6544397146128554 1.143268221714697 0.9899864434232324 1.0780374663645036 1.737363945064659 1.0 17.88839573464932 1.9045114161086036 1.3151775706096036 1.322760226350887 0.8246288478350479 0.289314426661885 0.2865851838552397 0.5243180463145627 1.6828471643022096 0.2134527953099166 0.09295021500515316 80.26226587852041 -1.9045114161086036 -0.4981313785158392 MADKDGDLIATK ddPTM_BT-474_Trastuzumab_2h_R1 3 MADKDGDLIATK 12 1 O43852;O43852-3;O43852-15;O43852-6;O43852-10;O43852-2;O43852-4;O43852-8 O43852;O43852-2 CALU Calumenin 0 ;; 110.77 0.0013255 3425800000.0 7122800.0 7162700.0 6565300.0 5689800.0 6223300.0 8383100.0 8100400.0 7562200.0 11431200.0 7667100.0 False True 7084451.6362174805 7401106.139556412 7489637.173389407 6410128.096611669 7015800.366610981 7803596.028694757 7708552.705466964 8126529.764073514 8614133.930232309 7177779.113865447 0.9869977222525997 1.031113666518319 1.0434477091836858 0.8930517357700668 0.9774333056667112 1.0871880988397105 1.0739467714430238 1.1321788585518533 1.2001113148762448 1.0 22.775106096234893 2.634274976638127 3.5137501118442747 1.110581662746252 0.9868168615231409 0.4627532834663687 0.060199776388437015 0.21782890778387476 5.005536512236516 0.020689881294193576 0.019440488532743848 430.7992877899471 -2.634274976638127 -0.12376480122311107 MAEDELFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 MAEDELFNR 9 0 P57740;P57740-2;P57740-3 P57740 NUP107 Nuclear pore complex protein Nup107 0 89.355 0.024203 0.0 118950.0 141350.0 136370.0 147010.0 123850.0 150720.0 171160.0 127950.0 184900.0 151100.0 False True 118309.58641658751 146054.7493021205 155569.7106507112 165621.45092672503 139621.56338353766 140301.08115671694 162880.33690530417 137498.27871693528 139333.87253306314 141456.6686367818 0.8363662707225982 1.032505223752619 1.0997693650637812 1.1708281590597267 0.9870270856020501 0.9918308023849193 1.1514503944917005 0.972016943718571 0.984993311915401 1.0 17.110000665186078 4.734276566898657 4.971430286067227 1.0471233296348283 0.826406308320775 0.4492573747515639 0.06882381937664113 0.15052863711209943 11.54624321786776 0.01677418763531525 0.11409521982725598 54234.61566924064 -4.734276566898657 -0.22071702131405335 MAEWLLSASWQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 MAEWLLSASWQRR 13 1 G3V4M2;G3V5E8;P54803-3;P54803 G3V4M2 GALC Galactocerebrosidase 0 62.338 0.081222 2081800000.0 739280.0 1823300.0 1758500.0 1956200.0 1740400.0 1445000.0 1409100.0 1099000.0 735480.0 1296500.0 False True 735299.7986217304 1883987.438291875 2006081.5148439964 2203854.7194262925 1962029.6238410096 1345110.5511641207 1340936.4497152616 1181012.9606089238 554230.8089270821 1213756.2600105065 0.6058051545005959 1.552195857078889 1.6527877803296613 1.8157308778017882 1.616493927556778 1.1082213089079986 1.1047823141226512 0.9730231674345398 0.4566244699922574 1.0 20.211047305761905 2.1177980044818137 1.4005780299031738 0.7853652840132114 1.471892560678379 0.3840240275251168 0.34165633614632296 0.4371387558407001 1.6278246636936993 0.22529159432682053 0.1177763387335588 131.15897211831094 -2.1177980044818137 0.6865272766651677 MAFRPGVVDLPEENR ddPTM_BT-474_Trastuzumab_2h_R1 1 MAFRPGVVDLPEENR 15 1 O60216;E5RFV8;E5RIN7;E5RJW1;E5RJK5 O60216 RAD21 Double-strand-break repair protein rad21 homolog 0 110.35 0.0008467 237520000.0 120600.0 127570.0 132050.0 132490.0 118520.0 112590.0 136980.0 128660.0 139100.0 126180.0 False True 119950.70299991962 131816.0903323064 150641.49220082426 149263.22041549426 133612.81947692274 104806.91830835176 130353.75408558421 138261.2625222421 104820.66884450572 118127.08437186712 1.0154377688889002 1.1158837199210465 1.2752493892645393 1.2635816858529223 1.1310938569880056 0.8872386791365887 1.1035043722507127 1.1704450614136217 0.8873550837378458 1.0 16.849980260586822 2.9866204927297493 24.822593047613505 1.0372665620099204 1.1747666547260136 0.3177413559730784 0.10739290357281057 835.3294962324504 1549764.7746710198 0.03417553510949472 0.03777342386363189 969.6622596996983 -2.9866204927297493 0.1375000927160932 MAGNEALS(ph)PTSPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 MAGNEALS(0.993)PT(0.006)S(0.001)PFR;MAGNEALS(0.989)PT(0.011)SPFR;MAGNEALS(0.996)PT(0.004)SPFR;MAGNEALS(0.993)PT(0.007)SPFR 201.4 1.877e-08 756057000.0 475033.0 619677.0 573106.0 602464.0 577656.0 587715.0 550892.0 475958.0 582327.0 529800.0 True False 472475.4751091282 640302.574342343 653794.3432733478 678735.8806279745 651217.0675646412 547087.6453822987 524243.249348194 511476.40282575256 438820.3136320235 495987.71041539987 0.9525951252167525 1.290964596292268 1.3181664173206664 1.368453020861181 1.312970168190727 1.1030266151637136 1.0569682238883087 1.0312279761879193 0.8847402958119719 1.0 18.91994484839087 2.3759198719034003 1.9262760866268582 0.987677321732646 1.260163304619859 0.5235031493141311 0.11467076599326012 0.2739820157217085 2.0769582481766014 0.05266357789883784 0.038876603226402136 237.64017958593507 -2.3759198719034003 0.27248598288721304 MAGNEALSPTS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 2 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 MAGNEALSPT(0.02)S(0.98)PFR;MAGNEALS(0.001)PT(0.042)S(0.957)PFR 147.64 8.3694e-06 186234000.0 378420.0 459810.0 400750.0 451430.0 421580.0 417700.0 394300.0 384680.0 458710.0 440370.0 True False 376382.6287664145 475114.49788898515 457172.11661855644 508580.9917138395 475265.7140995707 388825.3821600365 375226.2026277249 413386.77496545966 345667.0668990883 412265.20958027436 0.9129623844554048 1.1524486831491247 1.1089272293531671 1.2336257823734966 1.1528154766768628 0.9431438140412045 0.9101573305439508 1.0027204948637969 0.838458009229085 1.0 18.653213194009236 2.7318604227293677 24.192746802052845 0.9419708841551127 1.1209633550310567 0.4924694711316009 0.08768937695258743 283.84404482867603 1024887.8242482559 0.027822622312571755 0.02681147461469913 539.3372578425998 -2.7318604227293677 0.17899247087594405 MAGTAFDFENMKR ddPTM_BT-474_Trastuzumab_2h_R1 1 MAGTAFDFENMKR 13 1 P31150 P31150 GDI1 Rab GDP dissociation inhibitor alpha 0 89.959 0.011562 410780000.0 177390.0 185490.0 155250.0 175560.0 177210.0 214730.0 243360.0 183900.0 287730.0 253970.0 False True 176434.95194988168 191663.92251892723 177107.8505428092 197785.87799942784 199776.64309403894 199886.2205200494 231587.74707452 197623.55182527826 216822.7968844688 237761.4171653439 0.7420672119698268 0.8061186916026851 0.7448973540549052 0.8318670049896435 0.8402399576677757 0.8407008290207348 0.9740341802954068 0.8311842778420478 0.9119343225216646 1.0 17.859155094565093 7.999999997472479 0.08531171872610498 1.1213515962169618 0.08017595810614214 0.7346428534899259 0.042213317892426154 85.8576860272309 0.5296004201442182 0.9026092851232588 10.488639318161308 99999999.41801672 -7.999999997472479 -1.0411756381108197 MAKPEEVLVVENDQGEVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MAKPEEVLVVENDQGEVVR 19 1 O14980 O14980 XPO1 Exportin-1 0 ; 219.91 2.7569e-19 959020000.0 958610.0 888810.0 878860.0 834360.0 879670.0 1054310.0 1039400.0 934890.0 1284280.0 1085360.0 False True 953448.950271583 918393.5035530085 1002595.848811938 939989.8904511427 991690.7602874169 981428.0312787837 989120.25110641 1004656.2390752297 967786.4024703206 1016091.3955765548 0.9383495957374711 0.9038493068154463 0.986718176314288 0.9251036811681391 0.975985786913103 0.9658855842607521 0.9734559857631304 0.9887459370770122 0.9524599919687099 1.0 19.954598745070843 7.999999999999666 0.17742859332525063 0.9982739383318536 0.6761617978346206 0.4126877052828669 0.022338588667018926 48.56657039222396 0.5406028521880702 0.04753813083746129 4.206585373211439 99999999.99992311 -7.999999999999666 -0.322112140497233 MALIQLGSVEEAIQALIELHNHDLGENHHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 MALIQLGSVEEAIQALIELHNHDLGENHHLR 31 0 O95758-1;O95758-6;O95758;O95758-5;O95758-4;O95758-7 O95758-1 PTBP3 Polypyrimidine tract-binding protein 3 0 ;;; 194.77 4.7248e-20 673068000.0 270683.0 338382.0 287038.0 325144.0 318470.0 321328.0 329319.0 35012.6 344621.0 102953.2 False True 269225.6728037083 349644.8403137614 327450.4554209784 366307.1970622349 359025.2667804217 299115.35168475023 313388.5818492516 37625.418002380335 259693.7722348122 96382.638633331 2.7933005012233068 3.6276744989719276 3.3974008189037033 3.8005516580198577 3.7249993553949436 3.103415261566727 3.2515044855897495 0.3903754715153516 2.6944040536467013 1.0 16.556485677318708 1.7596090157026896 24.999998598570247 1.3465406905597619 3.413484969327495 0.7018885124522394 0.6042420933441961 4.868481474224826 5787.405211331006 0.2586108800411924 0.14341662967360364 57.492211649480964 -1.7596090157026896 2.0669442787677332 MALIQMGS(ph)VEEAVQALIDLHNHDLGENHHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 31 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 MALIQMGS(1)VEEAVQALIDLHNHDLGENHHLR 158.36 1.1341e-12 106580000.0 82287.0 69499.0 63112.0 62639.0 69102.0 93681.0 51418.0 5328.3 60140.0 23300.0 True False 81843.97593494516 71812.23220196727 71997.62102066205 70569.09097747853 77901.73010035706 87205.05297135358 48930.71490416528 5725.924802559168 45319.30283471295 21812.974051866397 3.752077811138381 3.2921797839769016 3.3006788001245373 3.235188874734868 3.5713484055463547 3.997852505760992 2.243193192630172 0.2625008762649327 2.077630621434461 1.0 14.412898864675528 2.0113784918657163 4.8685634101549145 1.0660953001322326 3.480302604633962 0.8441837339171068 0.466535614901163 0.061807407805933794 4.024565077220707 0.18456731716878982 0.12405027889930834 102.65461815019647 -2.0113784918657163 2.4142073045017294 MALIQMGSVEEAVQALIDLHNHDLGENHHLR ddPTM_BT-474_Trastuzumab_2h_R1 18 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 31 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;A0A0D9SF20 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ;;;;;;;;;;;;;;;;; 307.05 5.0664999999999984e-83 20132833000.0 5149356.1 6457679.7 5652171.5 5772635.5 5471434.1 5852748.2 5789734.5 114825.73000000001 6275725.6 1295533.5 False True 5121632.538904851 6672619.6650646925 6447948.117644609 6503450.562418345 6168188.800904317 5448161.492821323 5509662.923301372 123394.60904584255 4729157.116294653 1212851.4428679685 4.222802857697053 5.501596839664293 5.3163544105595255 5.362116358653097 5.0856919346352205 4.492027053155274 4.5427351846759985 0.10173926062540484 3.8992055821048077 1.0 20.209971420884923 1.865510720074546 6.425762691635929 1.6645864161953325 5.007796788995792 0.7084957856122199 0.9626775605908605 0.11641093725507183 5.509951438579441 0.3955893976478691 0.24068432364781323 73.3686824435199 -1.865510720074546 3.34321037280046 MALLQEFASRPLGAAPQAEHQGLPVPGS(ph)PGGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 MALLQEFASRPLGAAPQAEHQGLPVPGSPGGQK 33 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 MALLQEFASRPLGAAPQAEHQGLPVPGS(1)PGGQK;MALLQEFASRPLGAAPQAEHQGLPVPGS(1)PGGQK 166.28 2.1459e-14 1881030000.0 2060400.0 1698780.0 1676150.0 1463570.0 1670310.0 2294900.0 2008050.0 1827040.0 3045400.0 2175000.0 True False 2049307.0353319617 1755322.865365803 1912137.3506430255 1648857.8119367876 1883014.077796989 2136258.9646135243 1910912.950004068 1963383.0023211373 2294901.9762692833 2036189.6378888148 1.0064421295536832 0.8620625666211408 0.9390762604143243 0.8097761530926829 0.9247734310981746 1.049145386491832 0.93847494086325 0.9642436862397721 1.127057094077303 1.0 20.957440500532062 2.903246547282833 6.166835086082307 1.0024857928952433 0.8995453121546988 0.3806469318361615 0.06764750153456184 0.26604507113035586 14.099988240935023 0.020357104859660784 0.021709548774984915 800.2884467020067 -2.903246547282833 -0.10294048074054452 MALPPQEDAT(ph)ASPPRQK ddPTM_BT-474_Trastuzumab_2h_R1 1 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MALPPQEDAT(0.657)AS(0.343)PPRQK 88.755 0.006818899999999999 668210000.0 302750.0 254050.0 254700.0 226200.0 230920.0 351560.0 354790.0 243090.0 352680.0 293140.0 True False 301120.0276386872 262505.9006735318 290559.54610791337 254836.89680719146 260326.29322992766 327257.48468322365 337627.45227058243 261230.6101860085 265766.73966987984 274431.55423021945 1.0972500173434099 0.9565441605644107 1.058768722579781 0.9285991092460523 0.9486018980584902 1.1924921884481576 1.230279270245098 0.951897134856669 0.9684263182320837 1.0 18.06608684703436 MALPPQEDATAS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 21 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MALPPQEDAT(0.002)AS(0.998)PPR;MALPPQEDAT(0.008)AS(0.992)PPR;MALPPQEDAT(0.013)AS(0.987)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.091)AS(0.909)PPR;MALPPQEDAT(0.001)AS(0.999)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.001)AS(0.999)PPR;MALPPQEDAT(0.006)AS(0.994)PPR;MALPPQEDAT(0.002)AS(0.998)PPR;MALPPQEDAT(0.002)AS(0.998)PPR;MALPPQEDAT(0.007)AS(0.993)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.002)AS(0.998)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.012)AS(0.988)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.059)AS(0.941)PPR;MALPPQEDATAS(1)PPR 240.78 7.8105e-18 35257970000.0 9626084.0 11030123.0 9975821.0 10472090.0 10114110.0 10684366.0 10653651.0 9602459.0 11500205.0 10700959.0 True False 9574258.233302468 11397253.976204837 11380329.885409461 11797855.520272434 11402081.957473341 9945780.926712234 10138293.200230954 10319043.250878796 8666133.572601937 10018014.635068087 0.9557041571678037 1.137675915975279 1.1359865502264876 1.177664033248066 1.138157845922916 0.9927896184037305 1.0120062277351674 1.0300487298907468 0.8650549922602542 1.0 23.256093288518784 2.730683342090293 23.27758650285458 0.988490528098253 1.1159384452540535 0.4582344609516673 0.06965671308235585 220.0685640745666 650306.5906059128 0.022441215719786824 0.021546087830515787 537.8774559565754 -2.730683342090293 0.1274479171558005 MALPPQEDATAS(ph)PPRQK ddPTM_BT-474_Trastuzumab_2h_R1 1 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MALPPQEDAT(0.086)AS(0.914)PPRQK 154.84 7.429800000000001e-08 596400000.0 250350.0 377380.0 377940.0 531200.0 424040.0 369200.0 525340.0 364230.0 608830.0 495560.0 True False 249002.1434164996 389940.86516897305 431150.6668866302 598449.8655348375 478038.98051800806 343678.0730033172 499927.2972063124 391410.6921224642 458792.0044040283 463932.93652973894 0.5367201244194011 0.8405112775259429 0.9293383438383936 1.2899490818895023 1.0304053514583027 0.7407925713877113 1.0775852668401054 0.8436794659380129 0.9889188032991033 1.0 18.82355674718492 4.670331214173753 2.162968797388461 0.9824478128876644 0.45745078275839524 0.5047739821067763 0.1363983206769715 0.4773509150712621 2.841292094335905 0.03579755211647043 0.45750976248697706 46809.19950000747 -4.670331214173753 -0.5249970301292691 MALVS(ph)ADSR ddPTM_BT-474_Trastuzumab_2h_R1 1 MALVSADSR 9 0 H3BPL5;Q96ES7 H3BPL5 CCDC101 SAGA-associated factor 29 homolog 1 MALVS(1)ADSR 60.788 0.098006 220890000.0 218210.0 301080.0 263360.0 310440.0 262490.0 244720.0 288460.0 246260.0 291330.0 277120.0 True False 217035.18160541038 311101.2657932964 300438.79883384384 349741.6721698698 295916.5455998772 227803.08240891589 274506.08777578926 264637.1716829423 219535.62512199715 259433.9643456317 0.8365719660216292 1.1991539603458812 1.1580549971228258 1.348095161911512 1.1406237666153898 0.8780773287857735 1.0580961843919467 1.0200559990301756 0.8462100391355085 1.0 17.98500783986061 2.8196017944218457 8.140248349124747 0.9748784337570977 1.1536462297138173 0.29874366802010166 0.1326905838000705 0.41731435026190994 38.31292405654296 0.040656395969765294 0.04314568301422506 660.0879343537882 -2.8196017944218457 0.17876779595671954 MANSS(ph)PVLSK ddPTM_BT-474_Trastuzumab_2h_R1 17 MANSSPVLSK 10 0 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 MANS(0.288)S(0.712)PVLSK;MANS(0.009)S(0.991)PVLSK;MANS(0.001)S(0.999)PVLSK;MANS(0.002)S(0.998)PVLSK;MANS(0.043)S(0.957)PVLSK;MANS(0.002)S(0.998)PVLSK;MANS(0.045)S(0.955)PVLSK;MANS(0.073)S(0.927)PVLSK;MANS(0.057)S(0.943)PVLSK;MANS(0.006)S(0.994)PVLSK;MANS(0.007)S(0.993)PVLSK;MANS(0.034)S(0.966)PVLSK;MANS(0.033)S(0.967)PVLSK;MANS(0.001)S(0.999)PVLSK;MANS(0.028)S(0.972)PVLSK;MANS(0.017)S(0.983)PVLSK;MANS(0.022)S(0.978)PVLSK 234.49 4.5296e-12 22033450000.0 21178250.0 21106840.0 19374470.0 18338100.0 18480710.0 22009370.0 22171170.0 21135220.0 28633200.0 22731340.0 True False 21064228.655124757 21809368.41004578 22102226.970087893 20659701.579752233 20834118.87474996 20487914.05638412 21098665.8050057 22712437.43887252 21576931.525222834 21280606.419920724 0.9898321617097614 1.0248471298087674 1.0386088880154305 0.9708229724324368 0.9790190403243015 0.9627504805128784 0.991450402712927 1.0672833748577513 1.0139246551275307 1.0 24.343035927200393 1.7737372576529502 24.999999999949438 1.0340260583573082 0.9941554353278491 0.22694984370300786 0.027151006731036917 48.64580425738803 34587.9763377055 0.013238961969646645 0.007345984518160737 59.39327285523733 -1.7737372576529502 -0.039870623029459096 MAPALSGANLTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 MAPALSGANLTSPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MAPALSGANLT(0.02)S(0.98)PR;MAPALSGANLT(0.045)S(0.955)PR;MAPALSGANLT(0.002)S(0.998)PR;MAPALSGANLT(0.001)S(0.999)PR;MAPALSGANLT(0.079)S(0.921)PR;MAPALSGANLT(0.049)S(0.951)PR 200.46 2.0152e-08 4953260000.0 2400440.0 2676310.0 2299980.0 2504020.0 2313920.0 2642510.0 2408750.0 2274760.0 2881680.0 2559230.0 True False 2387516.2977539566 2765389.360486441 2623797.1922154627 2821028.6752570425 2608583.996321643 2459839.503499444 2292229.5601814208 2444514.1421972304 2171528.5765336794 2395897.7503329623 0.9965017486335379 1.1542184386216523 1.095120687788462 1.1774411803946971 1.0887710028356272 1.0266880141932584 0.9567309622720191 1.020291513633047 0.9063527757943335 1.0 21.192134908905267 2.619426920033309 2.626838475734054 0.9774050231828538 1.110441416968181 0.5788927878011583 0.05278179021168524 0.19705384696669706 2.657047419136421 0.0180845906581385 0.016756930809788507 416.3196598383321 -2.619426920033309 0.13303639378532728 MAPPVDDLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 MAPPVDDLSPK 11 0 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK 193.15 1.1333e-06 818980000.0 1755480.0 1312000.0 1082880.0 1105700.0 1098470.0 1772720.0 1672770.0 1426410.0 2545890.0 1626490.0 True False 1746028.6907321631 1355669.1268792518 1235340.0914383093 1245681.5066300246 1238353.6433582136 1650176.038934022 1591851.7244980456 1532855.9573632148 1918489.5226782088 1522686.015691852 1.1466767756048726 0.8903142952050335 0.8112901009844874 0.8180816621370449 0.8132692036286625 1.0837270598983226 1.0454234872412402 1.0066789486253618 1.2599377041014712 1.0 20.538187051986778 2.72637513063955 24.22730473210841 1.0706741385785519 0.8865878988184435 0.39167920136569545 0.11362988342154104 538.3198631830059 1070290.5782407955 0.03716665490379053 0.035294826250835624 532.5680770940783 -2.72637513063955 -0.1840862397601084 MAPTPIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_BT-474_Trastuzumab_2h_R1 2 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-3;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 MAPTPIPT(0.629)RS(0.273)PS(0.097)DSSTASTPVAEQIER;MAPTPIPT(0.59)RS(0.4)PS(0.01)DSSTASTPVAEQIER 185.47 3.3335e-17 1417860000.0 395378.0 446520.0 469230.0 483790.0 492010.0 528910.0 523160.0 471250.0 606250.0 560340.0 True False 393249.3287786256 461382.14827295946 535293.505379726 545037.7643958937 554664.557128255 492347.6966202184 497852.7521347221 506417.06795901305 456847.8108337998 524578.6214687905 0.7496480273587012 0.8795290722696925 1.020425696878257 1.0390010993391587 1.057352576769571 0.9385584476196775 0.9490526905971931 0.9653787768572686 0.8708853013389143 1.0 19.000799488045377 4.550331130820768 3.0029183844918683 0.9794468707491206 0.7488076817828277 0.6561922956884715 0.05196707497403705 0.18321124131329788 2.857247577862166 0.013736243406998631 0.0795845838305223 35508.40223073907 -4.550331130820768 -0.23063918896629287 MAPTPIPTRS(ph)PSDSSTASTPVAEQIER ddPTM_BT-474_Trastuzumab_2h_R1 10 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-3;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 MAPT(0.001)PIPT(0.138)RS(0.807)PS(0.053)DSSTASTPVAEQIER;MAPTPIPT(0.134)RS(0.843)PS(0.008)DS(0.011)S(0.002)T(0.001)ASTPVAEQIER;MAPTPIPT(0.007)RS(0.887)PS(0.105)DSSTASTPVAEQIER;MAPTPIPT(0.121)RS(0.875)PS(0.004)DSSTASTPVAEQIER;MAPTPIPT(0.017)RS(0.981)PS(0.003)DSSTASTPVAEQIER;MAPTPIPT(0.279)RS(0.572)PS(0.149)DSSTASTPVAEQIER;MAPTPIPT(0.019)RS(0.868)PS(0.113)DSSTASTPVAEQIER;MAPTPIPT(0.216)RS(0.65)PS(0.132)DS(0.002)STASTPVAEQIER;MAPTPIPT(0.014)RS(0.779)PS(0.202)DS(0.004)S(0.002)TASTPVAEQIER;MAPTPIPT(0.249)RS(0.75)PS(0.002)DSSTASTPVAEQIER 291.51 9.973099999999997e-71 29313830000.0 3038340.0 3968090.0 3864390.0 4242230.0 4240820.0 4151490.0 4318400.0 3758290.0 4799260.0 4632330.0 True False 3021981.9150313064 4100165.4768889416 4408462.52211998 4779295.883034364 4780863.289690549 3864507.267856285 4109502.4941099905 4038752.684009925 3616546.6797892316 4336690.733462756 0.696840540579272 0.9454595056205556 1.0165498978526228 1.1020605749347956 1.1024220041333523 0.8911189442302144 0.9476125337691857 0.9312982945373802 0.8339415702123393 1.0 22.048163131914503 -0.14078059468017468 7.565939156621906 0.9999999852677286 0.950255197994825 0.017464084400223068 0.11499082061326193 0.0 0.0 0.11339153657616785 0.02672664148072358 0.7231350387373634 0.14078059468017468 -0.049744787272903546 MAQEVLTHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 MAQEVLTHLK 10 0 O14980;C9JKM9;C9J673;C9IYM2;F8WF71;C9IZS4;C9JQ02;C9JV99;C9JF49;H7BZC5 O14980 XPO1 Exportin-1 0 105.46 0.0025462 515260000.0 938130.0 984580.0 1031900.0 944600.0 850080.0 1058000.0 1130800.0 898180.0 1608800.0 1150900.0 False True 933079.2123160419 1017351.1501088217 1177182.5505644116 1064186.2631479795 958332.6491810885 984862.9502641103 1076098.8839245026 965206.7524656252 1212332.7968155325 1077448.5766649372 0.8660081163262876 0.9442224642013662 1.092564950253296 0.98769100094038 0.8894462992818162 0.9140695635912294 0.9987473251441732 0.8958262819867117 1.1251885454878106 1.0 20.039187584846584 1.2408416092735775 24.99996970433041 1.062594270918448 0.9511119596878574 0.3063931289484463 0.06853732239651426 71.30663464916987 781605.2516199615 0.05186631063601972 0.016874843477074648 17.41171738098327 -1.2408416092735775 -0.11148231123059049 MAQYLEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 MAQYLEEER 9 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 ;; 146.69 0.00021909 414440000.0 567392.0 714910.0 679320.0 661400.0 593720.0 599230.0 640590.0 557620.0 724290.0 601720.0 False True 564337.224515178 738705.3471777784 774962.35124471 745133.17218513 669326.7227458546 557806.6405356927 609602.2144085579 599232.4359369855 545798.4344887639 563317.7144415906 1.0018098313748185 1.3113476253983016 1.375710955606855 1.3227582820181158 1.1881868891862373 0.9902167573207582 1.0821641123301944 1.0637557111638087 0.9688998241956702 1.0 19.103589314619274 2.9080795347885204 4.05972432691493 1.0340123901082172 1.2654246108956768 0.5524940860052634 0.09906507161177482 0.17984705437570195 5.32513399057395 0.031366495177779126 0.03398122555322041 809.244087025063 -2.9080795347885204 0.2314122207874596 MASNIFGT(ph)PEENQASWAK ddPTM_BT-474_Trastuzumab_2h_R1 4 MASNIFGTPEENQASWAK 18 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK 303.05 1.1248e-48 685466000.0 1531281.0 1463429.0 1477871.0 1471324.0 1524018.0 1919940.0 1912506.0 1826530.0 2318630.0 2014120.0 True False 1523036.7532373134 1512138.3496034876 1685942.3909149915 1657593.4675417524 1718092.6587376052 1787219.0668526224 1819990.7782975931 1962834.9435314094 1747234.7045502223 1885577.137225116 0.8077297518990232 0.8019498750545977 0.8941253887900262 0.8790907753480335 0.9111760133377588 0.9478366233707941 0.9652168253248753 1.0409730287778038 0.9266312526049805 1.0 20.8465747403372 3.550563435002987 0.5346626765965575 1.003059953748671 0.7698496222513583 0.8097830681272421 0.03169002526974422 0.5638855157758869 0.28231415992993336 0.02308619969904248 0.07225898948231897 3552.7400761017952 -3.550563435002987 -0.23321033149731274 MATGETNSVYHDDDNSVLSIDLNHLRPIPEAIS(ph)PLNS(ph)PVRPVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 MATGETNSVYHDDDNSVLSIDLNHLRPIPEAISPLNSPVRPVAK 44 2 Q9UKL3;A0A087WTW5 Q9UKL3 CASP8AP2 CASP8-associated protein 2 2 MAT(0.001)GET(0.001)NS(0.001)VY(0.001)HDDDNS(0.146)VLS(0.163)IDLNHLRPIPEAIS(0.749)PLNS(0.938)PVRPVAK 47.576 0.050605 49890000.0 12499.0 12781.0 19560.0 11717.0 10989.0 20135.0 19996.0 13821.0 20712.0 18427.0 True False 12431.706772769445 13206.40785872234 22313.87798143222 13200.37099862893 12388.384013094033 18743.114842691746 19028.717087862016 14852.393201615958 15607.805126580892 17250.973083851593 0.7206380018299722 0.7655456764398225 1.293485177501085 0.7651957332763809 0.7181266791663269 1.086496092225483 1.103051810200466 0.8609597342377796 0.9047492596919736 1.0 14.074390122521539 2.724224856906737 24.932139850404646 0.9818193069269137 0.8674000103202392 0.1368277614849842 0.17109124472317525 2054.314042798728 3572770.0551361316 0.05780918257220997 0.05474165567360018 529.937749289584 -2.724224856906737 -0.11441929660667449 MATGLER ddPTM_BT-474_Trastuzumab_2h_R1 4 MATGLER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;; 143.02 0.0056997 948900000.0 822460.0 1097370.0 1031910.0 1064310.0 1009400.0 999480.0 1024940.0 914180.0 1108100.0 1010270.0 False True 818031.9667438956 1133895.2970758271 1177193.9584774897 1199051.536873836 1137941.1068174643 930388.3001228487 975359.7365489737 982400.7537119797 835023.6027792727 945793.7036643366 0.8649158517069343 1.1988822643698294 1.2446625029503022 1.2677728052410264 1.203159951698432 0.983711666210293 1.0312605516087578 1.0387051107507002 0.8828813297700104 1.0 19.851166011958398 2.734437741240388 24.66623866434901 0.9974071914067777 1.1694165415627145 0.35545497615084787 0.11235010572213243 337.22200561428843 2017515.2384094938 0.036407729966946176 0.03548035706886332 542.5474682691478 -2.734437741240388 0.17200935015593677 MATHTLITGLEEYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MATHTLITGLEEYVR 15 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 ; 278.97 1.222e-33 776120000.0 620620.0 773020.0 746170.0 736000.0 714680.0 710700.0 758450.0 652370.0 863640.0 698070.0 False True 617278.6508773642 798749.5033995418 851224.2501740939 829177.5245362205 805690.2617597647 661570.9818078487 721760.8759396357 701053.1620677379 650807.4941830973 653518.5749522054 0.9445464513728755 1.2222292280796423 1.3025249515460942 1.2687895284336206 1.2328498265235817 1.0123216189474524 1.1044228941655119 1.0727363979195372 0.995851562797115 1.0 19.317868716747633 2.7408912511524957 24.918947358070927 1.049692929045642 1.2059090961913614 0.3933863528720527 0.09637552872206682 214.02953167484506 2288393.1768124583 0.03078157426806737 0.031251973267420616 550.669789510991 -2.7408912511524957 0.1562161671457194 MAVTFIGNSTAIQELFK ddPTM_BT-474_Trastuzumab_2h_R1 2 MAVTFIGNSTAIQELFK 17 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 ; 295.29 9.5259e-46 193370000.0 265160.0 255540.0 246930.0 207230.0 214700.0 251980.0 289980.0 248620.0 370410.0 266570.0 False True 263732.40802204533 264045.49442280806 281695.5976459637 233465.29675222936 242040.77237339944 234561.21569711794 275952.55956882535 267173.2868667791 279127.418739708 249557.2743779411 1.0568011238279384 1.058055691147377 1.128781352289298 0.9355178979822432 0.9698806535562722 0.9399093505961584 1.1057684463683877 1.0705890562907796 1.1184904124132424 1.0 17.92901143219737 -0.36695143937918034 7.601907826825214 1.0000063000224861 1.0421847835908307 0.03453389515393723 0.0676037710696968 0.0 0.0 0.06875189832333209 0.016204977841292056 0.42958445804921236 0.36695143937918034 0.04217848356834453 MCDHLIR ddPTM_BT-474_Trastuzumab_2h_R1 4 MCDHLIR 7 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;H0YAC6 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 ;;; 173.38 0.00086556 1407370000.0 835510.0 970640.0 926000.0 1018180.0 935920.0 898150.0 984610.0 826980.0 1078750.0 961500.0 False True 831011.7069938876 1002947.1656357283 1056372.7510637138 1147081.4836036537 1055103.8643675474 836063.0045176848 936980.6527245358 888693.4469193516 812906.5170094211 900136.2468184354 0.9232065811493859 1.1142170634508741 1.1735698398964625 1.2743420650574349 1.1721601791915954 0.9288182844239193 1.0409320322743676 0.9872877023455852 0.9030927483285659 1.0 19.779783862248507 2.7424681295439326 24.959316987421747 0.9783338653953964 1.1408120126568735 0.4387337318018324 0.08973662686186755 331.3584458882441 2116562.3637335207 0.029339602160277374 0.030055498695180958 552.6728488703648 -2.7424681295439326 0.16247814726147713 MCDLVSDFDGFSER ddPTM_BT-474_Trastuzumab_2h_R1 4 MCDLVSDFDGFSER 14 0 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 ;;; 302.09 1.4067999999999996e-43 1402130000.0 1484550.0 1838240.0 1561230.0 1739730.0 1712820.0 1826940.0 1843820.0 1613730.0 1869570.0 1769060.0 False True 1476557.3477490097 1899424.707160456 1781037.6135455735 1959979.6396214662 1930937.4743204787 1700647.9379541718 1754627.3825235907 1734154.726954902 1408839.524454511 1656157.0762315367 0.8915563438637156 1.1468868106897547 1.0754038002229795 1.1834503307387094 1.1659144546326394 1.026863914275493 1.0594571056726794 1.0470955634841372 0.8506678168837835 1.0 20.65940807933141 1.4101088744539665 4.628680630089919 0.9262877664985525 1.0840552843246363 0.32830012487929694 0.08555441132295857 0.22271286032923224 7.894169849227836 0.05883111001605729 0.021184137251837605 25.7104024299148 -1.4101088744539665 0.15776751782608378 MCEDLWR ddPTM_BT-474_Trastuzumab_2h_R1 3 MCEDLWR 7 0 Q14376;Q14376-2;Q5QPP9 Q14376 GALE UDP-glucose 4-epimerase 0 ;; 107.43 0.0174 663254000.0 1187490.0 1345980.0 1287940.0 1202330.0 993010.0 1210710.0 1219430.0 986250.0 1545110.0 1264510.0 False True 1181096.685782543 1390780.1306379098 1469270.757024835 1354544.854722329 1119463.9374686053 1127016.4674047837 1160441.512225024 1059848.9830760236 1164338.3439132564 1183807.8891985223 0.9977097606455259 1.1748360044969075 1.2411395213961454 1.1442269198251427 0.9456466270270593 0.9520264881557866 0.980261681657386 0.895287987811584 0.9835534587470545 1.0 20.175003545740186 3.242448502557086 12.338782088722503 0.951391608685187 1.1493043680561756 0.6609119129953107 0.0628520472444844 0.11927833879391561 350.53801940954935 0.01786320239911355 0.023016261320723857 1747.6260214535982 -3.242448502557086 0.19791275937098862 MCHNVNR ddPTM_BT-474_Trastuzumab_2h_R1 6 MCHNVNR 7 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;;;;; 121.68 0.004414100000000001 407310000.0 200208.0 243865.0 248577.0 226233.0 214105.0 209949.0 254829.0 159186.0 272333.0 237256.0 False True 199130.1023731998 251981.89910549452 283574.48092998326 254874.07460380797 241370.00265024125 195435.71979678614 242501.9477286853 171065.26765012945 205220.18122523924 222114.11895491913 0.8965215867867263 1.1344704257933167 1.276706236705008 1.1474915498529739 1.0866936500296513 0.8798887739164942 1.0917898820196303 0.7701683641500039 0.9239402798472764 1.0 17.76094157690671 2.8395130555385752 4.37812720740032 0.9200985623125034 1.1258205237508194 0.35623290387480233 0.11676150500470811 0.2353045443927733 7.676659583114643 0.037169569485278706 0.03950780903553043 691.0557032557716 -2.8395130555385752 0.205721961438316 MCINTEWGAFGDDGSLEDIR ddPTM_BT-474_Trastuzumab_2h_R1 4 MCINTEWGAFGDDGSLEDIR 20 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;;; 279.24 2.7431e-44 441135000.0 297667.0 378915.0 316227.0 359829.0 357025.0 373131.0 354058.0 340244.0 343787.0 342614.0 False True 296064.3939459128 391526.95671604533 360749.012905642 405383.3145059013 402490.0174970327 347337.3322258954 336930.86190709425 365634.7350040241 259065.30035978512 320748.081193397 0.9230433829700728 1.2206681182917873 1.1247113671371465 1.263868245127468 1.2548477796016773 1.0828976152673109 1.0504532424745505 1.139943639393317 0.8076908812545012 1.0 18.291081109163926 1.2535161536096955 24.75549521529986 0.9038454850135933 1.1379340624760057 0.4272060499756629 0.1057843898553563 161.43731518581578 267225.58150204987 0.0697967659730405 0.025258638446067936 17.92735232021545 -1.2535161536096955 0.2340885774624124 MCINTEWGAFGDDGSLEDIRTEFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MCINTEWGAFGDDGSLEDIRTEFDR 25 1 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 299.34 3.5499e-63 441970000.0 51597.0 79242.0 73515.0 86738.0 77530.0 74124.0 92430.0 65622.0 78920.0 69196.0 False True 51319.20748496559 81879.52206719939 83865.27299616502 97719.02190655253 87402.98594368731 68999.98234912749 87958.8077831109 70519.04686176409 59471.22347382016 64779.85203832392 0.7922093964432803 1.2639658704184638 1.2946197059318707 1.5084786215433421 1.3492310215833696 1.0651457232150967 1.3578111868961085 1.0885953678937834 0.9180512397378869 1.0 15.983257552470754 1.5076129165439334 4.333329385545782 0.9667987381599443 1.2449651372916335 0.2645721342747721 0.1836616244928889 0.23369191490897123 9.4882412878661 0.11734934068407665 0.048009976004105226 32.18199155552086 -1.5076129165439334 0.27816639913168917 MCIVLRPS(ph)RVHNSEENTMRALTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALTLK;MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALTLK;MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALTLK;MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALTLK 62.684 0.027884 1508910000.0 448428.0 1050769.0 944349.0 1013445.0 1096194.0 928531.0 879121.0 481474.0 425726.0 1027581.0 True False 446013.7134730342 1085743.2109617265 1077305.1307713448 1141747.0330891435 1235787.8082491218 864343.8374968655 836594.5586616489 517404.03475543234 320811.53173613205 961999.9008236451 0.46363176658455596 1.128631312780942 1.1198599187473697 1.1868473501001429 1.2846028437124213 0.8984864101927991 0.869641003024401 0.5378420874185552 0.3334839551037995 1.0 19.87567721969903 2.021044170890293 2.2865559707192253 0.5801418289826183 1.048599284750887 0.29713168004935275 0.262601935726459 0.32315635714648555 3.1868058651836493 0.1383122219820381 0.07633775327027056 104.96491801378227 -2.021044170890293 0.4684574557682686 MCIVLRPSRVHNS(ph)EENTMRALTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 MCIVLRPS(0.078)RVHNS(0.459)EENT(0.459)MRALT(0.005)LK;MCIVLRPS(0.113)RVHNS(0.444)EENT(0.444)MRALTLK 47.75 0.082838 655506000.0 193674.0 374833.0 333028.0 341861.0 338262.0 283861.0 304223.0 252645.0 185901.0 362523.0 True False 192631.28070320425 387309.0898136665 379915.4476687326 385140.5675482021 381337.660664047 264238.35720691894 289506.5712452811 271498.65280531516 140088.18949577617 339386.4717684447 0.5675867977278481 1.141203677905931 1.1194183601046417 1.1348141413573325 1.1236089013124382 0.7785765762260627 0.8530292021857739 0.7999689893077182 0.41276892613255073 1.0 18.37256953342005 2.7236009281181977 22.248620215606348 0.7673608571212118 1.0364072855236062 0.25593715299694164 0.21055601937837057 247.8399212470268 368595.027588056 0.06666746948568596 0.06318516922569607 529.1769613079431 -2.7236009281181977 0.26904642840239434 MCIVLRPSRVHNSEENT(ph)MRALTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 MCIVLRPS(0.189)RVHNS(0.189)EENT(0.621)MRALT(0.001)LK;MCIVLRPS(0.035)RVHNS(0.182)EENT(0.783)MRALT(0.001)LK 73.655 0.015509 987020000.0 314690.0 511660.0 504220.0 491770.0 501310.0 447510.0 486280.0 448100.0 284570.0 500130.0 True False 312995.74400534586 528690.2937949979 575209.7932411941 554028.0315776857 565148.8570028363 416574.6870252288 462756.778630003 481539.49740569474 214441.5365426385 468211.27521716437 0.6684925386732157 1.1291703591498994 1.2285261455406045 1.1832863942046634 1.2070381191497592 0.8897151971233807 0.9883503519118981 1.0284662563547802 0.4580016498816199 1.0 18.836800151526685 1.3730787699778273 10.027683373299809 0.7291341994148682 1.052769258918585 0.27713012912003154 0.20072014074910463 0.3718680678928643 32.95340875899846 0.1298466617666599 0.04753659819004042 23.609064027493417 -1.3730787699778273 0.32363505950371685 MCQGGDFTR ddPTM_BT-474_Trastuzumab_2h_R1 2 MCQGGDFTR 9 0 P62937-2 P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed 0 ; 109.48 0.006102300000000001 0.0 384410.0 336250.0 329350.0 317460.0 312600.0 363270.0 341610.0 310450.0 341480.0 341340.0 False True 382340.3792719662 347441.8779825827 375719.6172384814 357650.4034500925 352407.75707463775 338157.9999455982 325085.0192230722 333617.35543315765 257326.82959756875 319555.3889641235 1.1964760804421657 1.0872665271233777 1.1757574123735508 1.1192125553240033 1.1028064906588153 1.0582140424599855 1.017304137091456 1.0440047858827155 0.8052651855808911 1.0 18.285706491549803 2.16014596911597 0.8264946607439113 0.9312387282780084 1.1457818040704402 0.6477122441159571 0.06187485717499392 0.39132813462629584 0.503607469084524 0.048140627828043035 0.026983604154341596 144.59256738272518 -2.16014596911597 0.21454307579243181 MCTLIDKFDEHDGPVR ddPTM_BT-474_Trastuzumab_2h_R1 5 MCTLIDKFDEHDGPVR 16 1 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1;A0A3B3ITX2;A0A3B3IS23 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ;;;; 245.76 2.2939999999999998e-20 3290490000.0 6643910.0 7020840.0 6850740.0 6715199.0 6755570.0 8037690.0 8012840.0 6910950.0 10571020.0 8178670.0 False True 6608139.926767791 7254524.41521259 7815264.644300447 7565342.504875136 7615851.796099517 7482063.408987076 7625228.317178654 7426680.182093034 7965933.765410834 7656700.278488333 0.863053232648208 0.9474739968069973 1.0207092298307148 0.9880682578277395 0.9946650017758196 0.9771916278358311 0.9958896182212982 0.969958325645638 1.0403873046710865 1.0 22.868291353445485 4.62243345804645 2.8403231597748158 0.9945305203279309 0.8546883289835686 0.8118961898969859 0.01991242678898334 0.12739217979721343 1.6093635971923403 0.0047089766916487705 0.035589045385450394 41921.17607621792 -4.62243345804645 -0.13984219134436227 MDADGFLPITLIASFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDADGFLPITLIASFHR 17 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 0 ; 164.41 2.5972e-09 425790000.0 314490.0 481140.0 489120.0 472060.0 487460.0 516860.0 509080.0 472110.0 552600.0 484590.0 False True 312796.82078312367 497154.45404472796 557983.844492747 531822.7475985975 549535.1415982179 481130.684757569 484453.85552554496 507341.24552600406 416419.1344606318 453663.0513216281 0.6894915066851319 1.0958671917327167 1.229952148113468 1.1722857879857567 1.2113288485744909 1.0605463313706531 1.0678715273686405 1.1183217236845686 0.917904011022066 1.0 18.791261638322645 1.2427367427549556 24.95617588826141 0.9589519884928245 1.0933207999174892 0.09756119171984656 0.14409401399712465 205.57377321349222 1228552.967116554 0.10399861309832598 0.03488986821300768 17.487863016146807 -1.2427367427549556 0.13436881142466472 MDAEHPELR ddPTM_BT-474_Trastuzumab_2h_R1 4 MDAEHPELR 9 0 Q12765;Q12765-2;Q12765-3;C9K052 Q12765 SCRN1 Secernin-1 0 ;;; 170.47 5.7682e-05 7768540000.0 7403300.0 9087100.0 8101100.0 8405200.0 8462600.0 9411500.0 9007000.0 7731700.0 9677200.0 8880200.0 False True 7363441.455383949 9389558.630232057 9241664.463976512 9469297.458195426 9540261.948240029 8760905.157287966 8571296.999918643 8308678.714777075 7292383.727836453 8313458.03327828 0.88572546176435 1.1294407925854932 1.1116510634903882 1.1390323280986552 1.1475684258043914 1.0538220223423973 1.0310146470467825 0.9994251106480512 0.8771781488094934 1.0 22.98701726891172 1.8007545790841744 1.6703802160233325 0.9426539277558895 1.0877037147383302 0.328785194681959 0.07697646169206684 0.38668953495397823 2.076908663719435 0.05473273042851916 0.022871723855047345 63.20545747896944 -1.8007545790841744 0.14504978698244064 MDATANDVPSPYEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDATANDVPSPYEVR 15 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ; 292.08 1.4231e-43 477090000.0 260690.0 312150.0 263650.0 278850.0 275970.0 283510.0 276960.0 266960.0 322510.0 266140.0 False True 259286.47400538184 322539.7240513404 300769.6283131188 314152.3814088655 311113.14369765774 263911.6210107541 263562.38671005506 286881.9107954125 243031.73191259164 249154.71734608235 1.0406645186862997 1.2945358911399796 1.2071600791541186 1.2608727009270297 1.2486745063932043 1.0592278718294303 1.0578261953754626 1.1514207471212599 0.9754249668691373 1.0 17.92668236384004 2.733028365588162 24.836564777745924 1.0664994655690652 1.2176828769055787 0.5130018385557881 0.07761116437859704 355.6190528385031 1596515.4298958976 0.023997964916363797 0.023205541135260983 540.7896430244504 -2.733028365588162 0.15118341133651358 MDDPDYWR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDDPDYWR 8 0 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ; 104.21 0.010758 657700000.0 2017520.0 2355800.0 2073150.0 2171400.0 2173630.0 2272500.0 2126360.0 2048210.0 2425000.0 2217450.0 False True 2006657.8964875431 2434211.3788888277 2365031.499857166 2446299.017361341 2450428.896385618 2115407.4238895965 2023499.84331598 2201057.830799641 1827391.2433351993 2075930.44254554 0.9666306034931239 1.172588121933391 1.1392633642180832 1.1784108789125174 1.1804002899927908 1.019016524125755 0.9747435664726469 1.0602753279636228 0.880275757743801 1.0 20.98532667396612 2.6152734627028007 5.170716930729491 0.9924488409773413 1.1330037566970226 0.491854667228216 0.07162655795437066 0.20099898076565553 7.67139070711924 0.023151543078242593 0.021721260564407256 412.3570867257371 -2.6152734627028007 0.14055491571968126 MDDPTVNWSNER ddPTM_BT-474_Trastuzumab_2h_R1 3 MDDPTVNWSNER 12 0 P15170-2;P15170-3;P15170;H3BR35 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 ;; 243.77 5.3832e-16 1607700000.0 678170.0 778590.0 744720.0 720960.0 708990.0 779520.0 795570.0 711670.0 909890.0 786550.0 False True 674518.8080717695 804504.8974824068 849570.1027777203 812233.4620783066 799275.6739870353 725633.6171927021 757085.2397274649 764778.4291870354 685659.801401347 736351.7056006659 0.9160280378810867 1.0925552169749457 1.1537558700766484 1.1030509685799417 1.0854536872906952 0.9854443354630099 1.028157107492385 1.038604818010411 0.9311580270490881 1.0 19.490035483559183 2.7444954769878263 24.131642820107494 1.0049355864210028 1.0778829709555002 0.24162192515880576 0.06354525154085255 457.1944008030727 1858989.4557720358 0.02002882876851666 0.020752445473185045 555.258834279464 -2.7444954769878263 0.07294738453449745 MDEFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 MDEFSR 6 0 O00422;O00422-2;H7BZW6;U3KQ12;U3KPY7 O00422 SAP18 Histone deacetylase complex subunit SAP18 0 ;; 189.97 0.003015 3271980000.0 2180270.0 2382600.0 2296750.0 2326890.0 2329880.0 2371740.0 2388110.0 2151090.0 2801450.0 2357830.0 False True 2168531.6685707704 2461903.4006878836 2620112.436291124 2621474.035418593 2626576.407719312 2207787.196275428 2272587.995833874 2311615.2588136927 2111070.1850067615 2207351.2707601795 0.9824134913624145 1.1153201727788618 1.1869938740601063 1.1876107215666656 1.1899222577359685 1.0001974880577564 1.029554301545865 1.0472348870950685 0.9563816203479656 1.0 21.073884803046 2.72729619010814 24.58316696433697 1.014584634959622 1.137594795854659 0.5114473542180284 0.06111861298505749 524.8326443955583 1145378.1808512323 0.020740070788245107 0.019718230284636384 533.6987555104824 -2.72729619010814 0.12301016089503714 MDEIGNHYTEMVK ddPTM_BT-474_Trastuzumab_2h_R1 2 MDEIGNHYTEMVK 13 0 Q8WVV4-1;Q8WVV4 Q8WVV4-1 POF1B Protein POF1B 0 ; 127.76 0.00017323 231270000.0 396030.0 428360.0 409520.0 365720.0 387090.0 464040.0 452650.0 402830.0 589580.0 433590.0 False True 393897.818483069 442617.70365091204 467176.85638834955 412020.11450188345 436383.61703781714 431962.0070326637 430753.5902090785 432891.2201292929 444285.90896724374 405917.9149849251 0.9703878640037297 1.0904118475957136 1.150914604017168 1.0150330874585443 1.0750538493823891 1.0641609820268854 1.0611839840206996 1.0664501470583518 1.0945215585859114 1.0 18.63082848850433 MDEISDHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 MDEISDHAK 9 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 ; 136.57 0.00018913 630890000.0 477440.0 503050.0 524910.0 465450.0 517450.0 700060.0 669090.0 579120.0 733530.0 672640.0 False True 474869.5160885703 519793.7151498533 598812.76540049 524375.9222763366 583344.1903335614 651666.4999639816 636723.5605279863 622336.8751117735 552761.3602984202 629711.5393239226 0.7541064224397168 0.8254473400756156 0.9509318600757953 0.8327240165224262 0.9263673188518308 1.034865107702537 1.0111352909486016 0.9882888215450732 0.8778009068912435 1.0 19.264331579096062 5.5967926412742015 0.4728687421508478 0.9847641987027029 0.3192170653475795 0.6120426997338249 0.05550774569975794 6.788925309469561 0.6342135313622148 0.034607535756045145 2.9890699128594584 395177.8929410044 -5.5967926412742015 -0.6655471333551235 MDELQLFR ddPTM_BT-474_Trastuzumab_2h_R1 13 MDELQLFR 8 0 P55072;C9IZA5;C9JUP7 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;;;;;;;;; 234.63 3.3636e-08 9746597000.0 3380810.0 4112688.0 3585574.0 3557119.0 3446215.0 3372237.0 3348027.0 3258223.0 4433013.0 3663848.0 False True 3362608.0946033043 4249576.333907604 4090391.652832093 4007449.900680368 3885070.052933373 3139122.193582037 3186070.1433048295 3501368.1451811553 3340556.3454808644 3430018.083861913 0.9803470455226548 1.238937005580722 1.1925277222523138 1.16834658089275 1.1326675130992632 0.9151911496768694 0.9288785264121935 1.0208016574766592 0.973917998041479 1.0 21.70978475196982 2.8131277678769986 6.043718562149694 0.9703528267300057 1.1537597907426635 0.615108416849227 0.06892297208103797 0.14933517795413143 9.55489735631252 0.02090686230758303 0.022159389431988315 650.3209843009531 -2.8131277678769986 0.18340696401265788 MDFDEFFHHPFLDAS(ph)PSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDFDEFFHHPFLDASPSVR 19 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 MDFDEFFHHPFLDAS(0.993)PS(0.007)VR;MDFDEFFHHPFLDAS(0.995)PS(0.005)VR 185.34 3.8343999999999997e-14 60674000.0 76410.0 87266.0 72124.0 83844.0 80144.0 80073.0 75264.0 45014.0 86657.0 73077.0 True False 75998.61704994903 90170.59605658909 82278.43228695384 94458.64180328112 90349.86334929556 74537.74198156725 71623.19278359912 48373.173256460475 65301.54349430863 68413.16329563271 1.1108771088618927 1.3180299187005333 1.2026696080607377 1.3807085837428463 1.3206502812750835 1.089523395658062 1.0469212258771745 0.7070740618647651 0.9545172354057379 1.0 16.06198631861139 2.2699941835289352 2.067798926498337 0.8629221263674371 1.2682248175387432 0.6863746478011118 0.10807828259460123 0.1577419639460894 1.3730559981552601 0.048908751309263976 0.0333834970984075 186.2062198046619 -2.2699941835289352 0.405302691171306 MDFELLPDDER ddPTM_BT-474_Trastuzumab_2h_R1 1 MDFELLPDDER 11 0 B3KV94;A0A3B3ISE6;A0A3B3ITA8;A0A3B3ITJ7;A0A3B3ITE7;A0A3B3IT25;A0A3B3IS40;Q9UGL1;Q9UGL1-2;A0A3B3IT51;A0A3B3ITA9 B3KV94 KDM5B Lysine-specific demethylase 5B 0 159.4 6.6764e-05 97656000.0 71030.0 87377.0 71617.0 77000.0 79591.0 88825.0 82321.0 72200.0 95495.0 76963.0 False True 70647.58237217486 90285.29062448809 81700.05109387686 86748.19210501206 89726.44207718331 82684.7368215592 78338.81873324122 77587.93062417122 71961.53681744126 72051.1554486606 0.9805197700474652 1.253072071673022 1.1339172923061793 1.203980582474124 1.2453157970675026 1.1475837730385248 1.08726665444055 1.0768450573905897 0.9987561805128413 1.0 16.136733945920138 1.7350621586796278 1.3232268129220763 1.0004938674100325 1.169305224827905 0.42312132837752015 0.07300100478674286 0.37891826257844174 1.2580495531228413 0.056874456789085134 0.02202944214539868 54.33280901132517 -1.7350621586796278 0.16881135741787245 MDGPGYGDEEEPLHTILGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MDGPGYGDEEEPLHTILGK 19 0 E5RHM4;A0A087X1F8;B3KME9;A0A087WT20;Q9NV06 E5RHM4 DCAF13 DDB1- and CUL4-associated factor 13 0 196.66 8.246e-16 124040000.0 76264.0 87017.0 76852.0 90853.0 80410.0 95826.0 81994.0 92046.0 107940.0 101930.0 False True 75853.40309772691 89913.30824211273 87672.09359044115 102354.98048463208 90649.73687258997 89201.77417014039 78027.63697250247 98914.93992011741 81339.63332189749 95424.74013333654 0.7949029045479957 0.9422431553544426 0.9187564301242774 1.0726251949086991 0.9499605316810454 0.9347866606238504 0.8176877072284904 1.0365754183024656 0.852395649264981 1.0 16.542075732157617 4.756625270057459 3.761339315096327 0.9500092145785038 0.7757785390133176 0.28114391432130026 0.07300700264876837 0.377459706446335 9.883844278871937 0.0169872659881999 0.18640096237321693 57098.57503868738 -4.756625270057459 -0.17423067556518623 MDIDAPDVDVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 9 MDIDAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;;;;;;; 240.79 3.3198e-24 4037010000.0 4966558.0 5002167.0 4788239.0 4274046.0 4342933.0 5964569.0 5408448.0 2385726.0 6548390.0 4849412.0 False True 4939818.603564467 5168661.104721188 5462381.431080518 4815139.785372194 4895979.774969384 5552252.38411518 5146820.70796225 2563760.98859116 4934627.02843043 4539918.374369503 1.088085334629062 1.1384920781618686 1.2031893484955278 1.060622546113709 1.0784290313698273 1.2229850685115606 1.1336813315893666 0.5647152167019328 1.0869417953171336 1.0 22.114234928084645 1.793255767792919 24.999999996494804 0.8369023243896531 1.1338529453152542 0.3971257646293648 0.13656837508121092 118.8347066723455 54331.178765155964 0.05770835889709505 0.033337324660145023 62.12347885251078 -1.793255767792919 0.2969506209256011 MDIDAPDVEVQGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 5 MDIDAPDVEVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;;; 291.67 3.4473999999999996e-49 3045930000.0 2606944.0 2700520.0 2516720.0 2407370.0 2383320.0 3271640.0 2982190.0 2622348.0 3517360.0 3047050.0 False True 2592908.5031627067 2790405.1757011884 2871052.3002776112 2712142.795166795 2686821.674955618 3045479.2274121693 2837930.0766278855 2818040.9237733283 2650553.7582092755 2852584.6602892485 0.9089681155684926 0.9782024051893502 1.0064740024180352 0.9507668020944161 0.9418902486431999 1.0676209788996627 0.9948626998296075 0.9878903728969721 0.929176194174904 1.0 21.443838273425158 MDIDVPDVEVQGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 MDIDVPDVEVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 295.82 2.5565e-49 1456520000.0 1561670.0 1650600.0 1570860.0 1429510.0 1462550.0 2127980.0 1854170.0 1680490.0 2231290.0 2009750.0 False True 1553262.1422378465 1705539.2231912294 1792023.433840112 1610485.8194290374 1648797.073286985 1980877.7513261067 1764476.713482753 1805896.6971553129 1681418.4772541858 1881486.0343664587 0.8255507156931234 0.9064851888552684 0.9524510950959725 0.8559648012329395 0.8763270325533797 1.0528261784271578 0.9378101571064249 0.9598246620859993 0.8936651383757731 1.0 20.84344115013309 MDKEETK ddPTM_BT-474_Trastuzumab_2h_R1 2 MDKEETK 7 1 O43852;O43852-3;O43852-15;H0Y875;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ; 95.502 0.012238 1847650000.0 1726180.0 1223750.0 1124290.0 941680.0 979610.0 957630.0 1461800.0 1589250.0 2151230.0 1364090.0 False True 1716886.438676628 1264481.7789775028 1282580.2594961352 1060896.591447375 1104357.5268966267 891431.2921185439 1391087.149381711 1707847.9050479813 1621088.1915051488 1277032.6083437963 1.344434298277853 0.9901718802759697 1.0043441734503034 0.8307513719820111 0.8647841250732707 0.6980489662473499 1.0893121603103257 1.3373565356822925 1.2694180093079719 1.0 20.284363933280442 2.0000832799773636 24.999999969472807 1.2331402940231413 0.9447923683122891 0.27887928705303355 0.17667480251295378 3.2121219972422668 963951.8040783831 0.06806296272208583 0.0497605335045989 100.01917776213995 -2.0000832799773636 -0.2883479257108522 MDKEETKDWILPSDYDHAEAEAR ddPTM_BT-474_Trastuzumab_2h_R1 5 MDKEETKDWILPSDYDHAEAEAR 23 2 O43852;O43852-3;O43852-15;H0Y875;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;; 205.02 9.7478e-25 5524660000.0 2822604.0 2837994.0 2824490.0 2575484.0 2663388.0 3430880.0 3615940.0 3142950.0 5317520.0 3438490.0 False True 2807407.4136847863 2932454.914686398 3222153.6410928126 2901540.0103296763 3002554.6746625234 3193711.3410228076 3441023.1679677847 3377492.8885767213 4007088.4471174404 3219042.6243606075 0.8721249580354397 0.910971135484379 1.0009664416086517 0.9013673781054713 0.9327477219283219 0.9921308021378464 1.068958559892095 1.049222791589343 1.244807514132672 1.0 21.61820024944717 2.288064935104869 1.3645646968425431 1.1076251759670168 0.9230804528370015 0.5933128614250469 0.06554258826124952 0.29463387771032085 1.0818860871141651 0.03699148611551544 0.02261461576108786 194.11760978367795 -2.288064935104869 -0.18454472313001535 MDLEKPNYIVPDYMPVVYDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MDLEKPNYIVPDYMPVVYDK 20 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 92.932 0.001443 103260000.0 191800.0 127700.0 136360.0 125920.0 129600.0 174100.0 167530.0 159960.0 220760.0 183130.0 False True 190767.37011098315 131950.41730371973 155558.30273763277 141861.45908913153 146103.79180061741 162064.8767873172 159425.93387325073 171897.02746042173 166356.65603244497 171442.48661451906 1.11271933741789 0.7696482937768191 0.9073497813141197 0.8274580116660395 0.8522029438894304 0.9453017159726164 0.9299091317528133 1.0026512730588462 0.9703350628977438 1.0 17.387365154671347 2.178375878292751 1.6740741323556103 0.9896628820379416 0.8861170811741174 0.17262884922320276 0.08541893618149744 0.5693019335431392 3.1194600555213823 0.04512101112623805 0.02622445560956314 150.7911586622953 -2.178375878292751 -0.10354580086382426 MDMMSLNSQLLDAIQQK ddPTM_BT-474_Trastuzumab_2h_R1 6 MDMMSLNSQLLDAIQQK 17 0 H0YHW1;H0YHP2;Q6ZP65-2;Q6ZP65 H0YHW1 CCDC64 Bicaudal D-related protein 1 0 ;;;;; 70.98 0.023883 38232670000.0 8229260.0 18909050.0 21473730.0 24162110.0 22745900.0 16517460.0 18328380.0 13101980.0 6407230.0 18596730.0 False True 8184954.578516747 19538426.2984879 24497044.530992877 27221030.648603067 25642455.539488204 15375646.868118552 17441766.23818906 14079716.27810637 4828254.018983336 17409870.769938417 0.470132988732443 1.1222614203561383 1.4070779073956061 1.5635400749559587 1.4728688040444833 0.8831568637871595 1.0018320336016346 0.8087203210271832 0.27732853866556384 1.0 24.05340215839751 2.0037225820870193 1.5192560978291145 0.6571725632082857 1.2126513708975786 0.2749786118041644 0.3379315309520328 0.5100260380859215 2.19675904175138 0.23298226170247177 0.11230239796668712 100.86084030452342 -2.0037225820870193 0.5554788076892929 MDPKELGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MDPKELGK 8 1 A0A3B3IU97;A0A2R8Y5X9;Q76EJ3 A0A3B3IU97 SLC35D2 UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter 0 59.8 0.08785499999999999 439570000.0 765580.0 1361500.0 1108900.0 1315900.0 1352400.0 1017100.0 1062000.0 746030.0 311530.0 1023700.0 False True 761458.2023439347 1406816.7044558704 1265023.4812684155 1482492.8050777325 1524620.1236971843 946790.2709958665 1010627.002766026 801702.5468635798 234757.60578812985 958366.5895663359 0.7945375085420049 1.4679317077324865 1.3199786960862678 1.5468953333907076 1.5908527491417246 0.98792078240571 1.0545307127446273 0.8365301499359998 0.24495595771379974 1.0 19.87021808842 2.010693472423263 1.44495223435206 0.6466548746740446 1.3432023136314508 0.47589627219094444 0.2841391125349448 0.33776715143640784 1.315513058267952 0.18922610465824422 0.09075402788447084 102.49282705537998 -2.010693472423263 0.6965474389574062 MDPMNIWDDIITNR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDPMNIWDDIITNR 14 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 153.38 1.4906e-05 184836300.0 68820.2 89911.0 101391.5 86691.9 89966.7 87652.3 77583.0 79523.0 108257.0 87017.1 False True 68449.67968984309 92903.63328265274 115666.54188928344 97667.08565127934 101423.42597059128 81593.10281232039 73830.01389415888 85457.41006961188 81578.51291947997 81463.59417891249 0.8402487071649711 1.1404313082309545 1.4198556183913704 1.1989046964559447 1.2450153592271227 1.0015897731337935 0.9062945802760858 1.0490257756357775 1.0014106760415589 1.0 16.313867847091164 2.721717747052978 20.346667813598437 0.9920535573350109 1.1829198729589703 0.28947527084894575 0.1379568075526767 92.99554740791937 112339.62371363759 0.0462262104661804 0.043792601129679296 526.8873200333996 -2.721717747052978 0.1908663156239594 MDPSAKPSAS(ph)QSPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MDPSAKPSASQSPEK 15 1 P35716 P35716 SOX11 Transcription factor SOX-11 1 MDPSAKPS(0.007)AS(0.594)QS(0.398)PEK 76.061 0.018156 341600000.0 266630.0 165420.0 138320.0 139290.0 113780.0 230190.0 240690.0 229000.0 360770.0 250530.0 True False 265194.49370537786 170925.90470149854 157794.25370100723 156924.0997182744 128269.20857310382 214277.507108975 229046.90517491056 246089.14283843804 271863.0675703261 234540.96091047593 1.1306958608675708 0.7287678196506614 0.6727790876632297 0.6690690577419958 0.5468947005042077 0.913603774271073 0.9765752825679671 1.0492373779110167 1.159128309677626 1.0 17.839480375607874 2.371947379641892 2.7470158137472347 1.0543012503036266 0.7394729705614704 0.4630422067330505 0.1493318039141709 0.23890870636255637 3.675540053446219 0.05943038343400494 0.04719664026086179 235.47639566936564 -2.371947379641892 -0.3148282797421562 MDPSAKPSASQS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 3 MDPSAKPSASQSPEK 15 1 P35716 P35716 SOX11 Transcription factor SOX-11 1 MDPSAKPSAS(0.064)QS(0.936)PEK;MDPSAKPSASQS(1)PEK;MDPSAKPSASQS(1)PEK 167.63 7.873899999999998e-07 1428500000.0 2377410.0 1510430.0 1306460.0 1229830.0 1371020.0 2257310.0 2137650.0 1848850.0 3505880.0 2315600.0 True False 2364610.2887150845 1560703.7494757825 1490398.2120461115 1385526.3519026886 1545611.2703278 2101267.4728361783 2034243.70288399 1986820.575270072 2641902.850385159 2167816.4255151013 1.0907797638599508 0.7199427641134046 0.6875112645628992 0.6391345390666415 0.712980698981715 0.9693013892248232 0.9383837482459463 0.9165077595525543 1.2186930679600365 1.0 21.047811161250127 2.6915446162748156 6.128958543120404 0.9918767223962732 0.7554686752988229 0.4187938157920069 0.1393217021405358 0.22298268279060587 21.218430056665916 0.04591583903363926 0.043643073192545456 491.52387321424976 -2.6915446162748156 -0.23640804709745034 MDPVNNINVDKDKPYLYCFR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDPVNNINVDKDKPYLYCFR 20 2 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 ; 195.53 1.0365999999999996e-21 2325000000.0 1010730.0 887360.0 807990.0 829920.0 711400.0 1000700.0 989640.0 1019610.0 1463460.0 1072890.0 False True 1005288.3419826595 916895.2411795519 921747.9688250216 934987.7869063859 801992.5732018468 931523.964394418 941767.332408069 1095698.4756746707 1102809.8923593126 1004417.2416526576 1.0008672693915217 0.9128629051318375 0.9176942913767462 0.9308758831817411 0.7984655578813608 0.9274272939218947 0.9376256134935467 1.0908797960017291 1.0979599379882814 1.0 19.937927268312343 1.8182723630699258 4.297483322999694 1.0708729680509148 0.9119264192103119 0.6132464027190786 0.052742420831480466 0.13592577659940447 4.203690859688473 0.02609143063695944 0.014289734892149594 65.80704096856473 -1.8182723630699258 -0.15894654884060289 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDR 31 1 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ; 216.19 7.7308e-35 153530000.0 128500.0 145154.0 133028.0 129780.0 143388.0 149556.0 146207.0 139490.0 164830.0 148146.0 False True 127808.17027769206 149985.36314255404 151757.18609989574 146210.1346933567 161647.61187273895 139217.54573695565 139134.40884502116 149899.45211586799 124209.8551088416 138691.19544582843 0.9215305259057545 1.081433919870833 1.0942092294472345 1.054213529729543 1.1655218008116246 1.0037951240483236 1.0031956851894455 1.0808144787706975 0.8955857270504016 1.0 17.081516678177472 1.2471246132365588 24.99956766860284 0.9477928528307259 1.0543541220352908 0.27785788196723704 0.06606577126542272 198.497872481326 579456.2366448294 0.04417556479346738 0.01556470897945942 17.66544627182174 -1.2471246132365588 0.10656126920456488 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_BT-474_Trastuzumab_2h_R1 7 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 38 2 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.942)PT(0.058)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.994)PT(0.006)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.99)PT(0.01)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.975)PT(0.025)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.999)PT(0.001)MGR;MDRDPLGGLADMFGQMPGSGIGT(0.001)GPGVIQDRFS(0.988)PT(0.011)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.999)PT(0.001)MGR 380.14 2.3343999999999993e-162 11845490000.0 1503790.0 1804159.0 1535798.0 1819890.0 1953116.0 2007555.0 1732972.0 1620555.0 2208900.0 2169258.0 True False 1495693.7617267752 1864209.3416778545 1752025.0090044811 2050287.887402472 2201833.7455744995 1868777.4481261512 1649141.523764073 1741489.0431115483 1664546.1927435563 2030814.097244791 0.7364995957808179 0.9179615919581366 0.8627205273892162 1.0095891545090716 1.08421236023609 0.9202109886185668 0.8120593243869373 0.8575324769875439 0.8196447892506995 1.0 20.953626749254475 -0.13739317607117202 7.233425335939502 0.9999999971889632 0.894941867840562 0.10454582540780966 0.094982394591129 6572353.064564182 908608.6385871979 0.09699542070406462 0.023524844977391254 0.7287974156329944 0.13739317607117202 -0.1050581293484012 MDRT(ph)PEKDK ddPTM_BT-474_Trastuzumab_2h_R1 5 MDRTPEKDK 9 2 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 MDRT(1)PEKDK;MDRT(1)PEKDK;MDRT(1)PEKDK;MDRT(1)PEKDK;MDRT(1)PEKDK 125.54 0.00080178 3927410000.0 5225280.0 3648160.0 3004270.0 2989170.0 3014690.0 4711700.0 4653850.0 4333930.0 8150400.0 4557140.0 True False 5197147.673063182 3769586.8002407067 3427245.102417044 3367598.615513495 3398592.902032434 4385991.269148776 4428725.496066545 4657349.863850623 6141843.129764625 4266299.42363616 1.2181863383216693 0.8835729577151653 0.8033297155444398 0.7893488668086256 0.7966137780211917 1.0280551910748457 1.0380718876716697 1.0916603363673831 1.4396183952156696 1.0 22.02455379187932 1.9852050390591272 1.492921858341354 1.2029793715569765 0.8936578762645415 0.35677879448846495 0.15812015850864464 0.41924519642610986 1.740533472273198 0.10712372098245702 0.05064907205548613 96.65070784978236 -1.9852050390591272 -0.309321495292435 MDRT(ph)PPPPTLS(ph)PAAITVGR ddPTM_BT-474_Trastuzumab_2h_R1 12 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 2 MDRT(1)PPPPT(0.034)LS(0.966)PAAITVGR;MDRT(1)PPPPT(0.01)LS(0.99)PAAITVGR;MDRT(1)PPPPT(0.01)LS(0.99)PAAITVGR;MDRT(1)PPPPT(0.007)LS(0.993)PAAITVGR;MDRT(1)PPPPT(0.016)LS(0.984)PAAITVGR;MDRT(1)PPPPT(0.014)LS(0.986)PAAITVGR;MDRT(1)PPPPT(0.006)LS(0.994)PAAITVGR;MDRT(1)PPPPT(0.002)LS(0.998)PAAITVGR;MDRT(1)PPPPT(0.216)LS(0.784)PAAITVGR;MDRT(0.946)PPPPT(0.189)LS(0.865)PAAITVGR;MDRT(1)PPPPT(0.009)LS(0.991)PAAITVGR;MDRT(1)PPPPTLS(0.999)PAAIT(0.001)VGR 148.0 5.1002e-08 7381740000.0 3747728.0 4054620.0 3615595.0 3867769.0 3797358.0 4097150.0 3831610.0 3709838.0 4560550.0 3966690.0 True False 3727550.648859725 4189575.575630454 4124639.348684884 4357428.158828708 4280929.032595756 3813923.6641536816 3646260.3861283786 3986684.949735662 3436663.5607391093 3713532.4481458366 1.0037748965195894 1.128191454937281 1.1107050783262478 1.1733917017486595 1.152791605398041 1.0270338868475406 0.9818846171517777 1.0735559754503317 0.9254432561791758 1.0 21.82436075368658 2.6288314741929155 5.3839313988398025 1.0081859704210503 1.1173991246151562 0.5164149203706339 0.05425675634061244 0.19981904074135215 8.290312273102598 0.017852913557087163 0.016778980474347827 425.43329383169413 -2.6288314741929155 0.10921315419410593 MDRT(ph)PPPPTLSPAAITVGR ddPTM_BT-474_Trastuzumab_2h_R1 8 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR 170.58 1.9292e-11 12295650000.0 1294890.0 1446069.0 1312058.0 1244227.0 1247103.0 1444685.0 1472438.0 1261814.0 1724997.0 1549372.0 True False 1287918.456115803 1494200.5324978298 1496784.3617874235 1401746.0106265317 1405914.1748914 1344817.326372691 1401210.5486806068 1355976.9680416635 1299894.603125561 1450489.752475895 0.8879197208511174 1.0301351870616964 1.0319165366266851 0.9663949767544646 0.9692686022025269 0.9271470715854229 0.9660258173412313 0.9348407775560605 0.8961763438223004 1.0 20.46810867244062 3.099816984219079 2.2809084396517068 0.9423503012132862 0.9876993755860433 0.10403358714841693 0.04522286849156031 0.5400039910975257 5.7237030618433025 0.014095613984599764 0.017531859638668726 1258.395000548488 -3.099816984219079 0.04534907437275704 MDRTPPPPTLSPAAIT(ph)VGR ddPTM_BT-474_Trastuzumab_2h_R1 1 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 MDRT(0.066)PPPPT(0.004)LS(0.017)PAAIT(0.913)VGR 189.34 9.054400000000001e-14 164900000.0 70824.0 85096.0 71701.0 74822.0 76984.0 82207.0 81671.0 77803.0 85332.0 85841.0 True False 70442.69145328611 87928.36891838169 81795.8775637358 84294.45752832755 86787.45608008283 76524.22358446283 77720.26171648223 83609.05493562882 64303.0719902183 80362.55388782245 0.876561135073141 1.094146025288349 1.017835715847385 1.0489270618003705 1.0799489548481604 0.9522373279883872 0.9671203558932613 1.0403981816249661 0.8001621262557003 1.0 16.294235792584693 1.2651494329888664 24.999939454842558 0.9000808172162407 1.0136218038258715 0.24900407759253973 0.07586061106512067 232.82689522072977 218914.29545260884 0.04700191389582479 0.017152392275860635 18.41405487277755 -1.2651494329888664 0.11354098660963086 MDS(ph)DEDEKEGEEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MDSDEDEKEGEEEK 14 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 MDS(1)DEDEKEGEEEK;MDS(1)DEDEKEGEEEK 224.89 1.8039e-12 2526400000.0 4897600.0 2140300.0 1746010.0 1599450.0 1539210.0 3033600.0 2909900.0 2934500.0 5909300.0 2596900.0 True False 4871231.865774518 2211538.591661329 1991833.0314090233 1801940.2060046948 1735219.2698875677 2823894.3723262833 2769137.0201025084 3153487.291089069 4453032.195563176 2431163.618682052 2.00366270223114 0.9096625890034571 0.8192920526216197 0.7411842593225121 0.7137402256900506 1.1615402396721999 1.139017135178945 1.2971102672219952 1.8316464434332027 1.0 21.21321556014775 1.7841567195020969 2.1830914641727834 1.4381997500473027 1.0153807419434802 0.10908297489532803 0.3960933986562144 0.5447722728214515 5.112314840414006 0.2543643631737737 0.11290726492631632 60.83544924691907 -1.7841567195020969 -0.42281900810382256 MDS(ph)DEDEKEGEEEKVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 MDSDEDEKEGEEEKVAK 17 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 MDS(1)DEDEKEGEEEKVAK;MDS(1)DEDEKEGEEEKVAK 172.0 8.641699999999998e-10 814740000.0 970920.0 592085.0 443315.0 452729.0 463571.0 844920.0 853060.0 779780.0 2164280.0 768620.0 True False 965692.6745993526 611792.1913020589 505729.89863694325 510044.4449806497 522604.0190494143 786512.6691277428 811794.2287943381 837971.1432426082 1630922.1938661893 719566.0135513119 1.3420487577412374 0.8502238568531728 0.702826271825969 0.708822311469938 0.7262766851232721 1.0930375452920928 1.1281720002141948 1.1645507534561357 2.266535888510094 1.0 19.456767521450193 1.5017663632247351 3.7930091616451302 1.6585434280651228 0.9190109110156337 0.37178451525451883 0.34975115712279875 0.17843594401887347 5.402390658203807 0.22277983900079348 0.08654995542071563 31.751654719211093 -1.5017663632247351 -0.7395325170494891 MDS(ph)FDEDLARPSGLLAQER ddPTM_BT-474_Trastuzumab_2h_R1 10 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER 270.0 7.821399999999999e-33 6227010000.0 2653200.0 2212570.0 2102411.0 2253840.0 2812280.0 2486110.0 2130740.0 1997269.0 3007310.0 2100146.0 True False 2638915.4659982305 2286214.0549231926 2398412.194315998 2539175.9129085806 3170407.1883105044 2314251.0673734485 2027667.965982753 2146315.3547064816 2266198.7463894323 1966112.8842545475 1.3421993656273588 1.1628091516169539 1.2198751218831245 1.2914700540560824 1.6125255135147367 1.1770692750690648 1.0313080099424425 1.0916541831830058 1.1526290095233582 1.0 20.906914725630802 2.4835813368643374 24.832713501286964 1.0799962324957169 1.3175193365838966 0.5192845719609693 0.11660502378550197 244.54173265492946 940029.9779736865 0.04141861656952075 0.035829743752211984 304.49582117788725 -2.4835813368643374 0.23752310408817978 MDSFDEDLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MDSFDEDLAR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ; 111.46 0.0040738 479220000.0 443390.0 522270.0 461500.0 485330.0 494970.0 476630.0 539240.0 524480.0 637370.0 598280.0 False True 441002.83750526013 539653.4412311176 526475.1885700901 546772.7282379945 558001.4955829609 443681.6899663351 513154.90110315644 563619.3608554757 480298.7038204359 560097.2581867222 0.7873683205180787 0.9634995232403206 0.9399710155241944 0.9762103281993113 0.9962582166344713 0.7921511549667735 0.9161889182683406 1.0062883769153879 0.8575273254780271 1.0 19.095317840393747 -0.6230830081535058 0.009650387555298708 1.9261024283572499 3.5754130726980073e-07 0.08637244838352343 0.07577078196611883 13968.387081166084 30.18500513433662 3159.3710418704386 2867.777862915774 0.2381864172201665 0.6230830081535058 -1.9261020708159426 MDSFDEDLARPSGLLAQER ddPTM_BT-474_Trastuzumab_2h_R1 4 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;; 257.2 5.020199999999999e-31 3785670000.0 1957407.0 2581148.0 2440426.0 2615634.0 2511742.0 2626312.0 2415018.0 2285694.0 3014200.0 2667760.0 False True 1946868.5382003617 2667059.950843082 2784016.768236946 2946772.996213005 2831597.4554387867 2444761.2331134533 2298194.353075333 2456264.0927989534 2271390.7982107042 2497501.272815758 0.7795265449476242 1.0678913279736424 1.1147208606216892 1.179888486259198 1.133772177119397 0.9788828777481087 0.9201974702036005 0.9834886250246782 0.9094653215731378 1.0 21.252053982590922 2.5579607358001986 6.855139120010914 0.953563623190691 1.0657777517896219 0.17760114348394784 0.1039759626351877 0.42235272286387116 30.479657077310595 0.03494883446139366 0.032790737626533284 361.3771893541047 -2.5579607358001986 0.11221412859893087 MDYEDDR ddPTM_BT-474_Trastuzumab_2h_R1 5 MDYEDDR 7 0 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;; 127.84 0.008876299999999998 3126770000.0 5266980.0 6153400.0 5530470.0 5307610.0 5331520.0 5925020.0 5594800.0 5407410.0 6237610.0 5746050.0 False True 5238623.164896485 6358212.199191142 6309112.104293009 5979552.881798481 6010457.469605166 5515437.313396846 5324158.1497884765 5810938.392471614 4700434.595191782 5379332.16955909 0.9738426629500855 1.181970549275875 1.1728430045639153 1.1115790386836413 1.1173240990057332 1.0253014945996375 0.9897433328094449 1.0802341646338416 0.8737951937214257 1.0 22.358995646293934 2.6770604492222807 3.301949174908987 1.002117873922719 1.1198589508482342 0.40369845915999525 0.07130400972618837 0.2690687940548565 5.844362294050443 0.023757821644791625 0.02279768405455059 475.4013922095472 -2.6770604492222807 0.11774107692551516 MDYEDDRLR ddPTM_BT-474_Trastuzumab_2h_R1 7 MDYEDDRLR 9 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;;;; 171.7 5.1759e-05 9767300000.0 5071192.0 6212684.0 5957131.0 6113428.0 5625320.0 5710188.0 6284296.0 5231955.0 7056789.0 6005653.0 False True 5043889.2657344015 6419469.431293221 6795843.264489118 6887387.35797611 6341671.158116132 5315456.143896705 5980300.594137975 5622390.049429168 5317737.907078 5622367.083841787 0.8971113394979345 1.1417734444522913 1.2087156820513913 1.22499780880012 1.1279361634606828 0.9454125041342252 1.0636624227764955 1.0000040846830238 0.945818340883635 1.0 22.42274621954711 2.75554139301429 22.949137583111472 0.9977886693119091 1.132060609863957 0.3384783163945787 0.08922957081367246 326.9430101851668 441854.5097940059 0.027999214208309225 0.029604039956021243 569.5625070776147 -2.75554139301429 0.13427194055204783 MDYVEINIDHK ddPTM_BT-474_Trastuzumab_2h_R1 4 MDYVEINIDHK 11 0 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7C0A4 Q00341 HDLBP Vigilin 0 ;;; 207.44 2.2982e-08 2188440000.0 3760430.0 3566350.0 3413350.0 3211330.0 3349680.0 4213860.0 4043770.0 3722330.0 5304080.0 3874810.0 False True 3740184.2627030537 3685053.8038458987 3893920.0106299375 3617884.0487349206 3776241.8928911504 3922565.776559477 3848157.396398468 4000109.1662087464 3996960.555030665 3627516.3084082627 1.0310592550703732 1.0158614022779908 1.073439698011605 0.9973446681270556 1.0409992876222651 1.0813364966733068 1.0608242856079733 1.1027129380333442 1.1018449581511358 1.0 21.790550669627727 2.821750557136211 4.51156704784117 1.0771386017203506 1.0303877317105101 0.2359564301946263 0.03269394950029117 0.2642327750753204 9.71504920709199 0.009690982177123489 0.010255878872131507 663.361950123432 -2.821750557136211 -0.04675087000984046 MDYYDSEHHEDFEFISGTR ddPTM_BT-474_Trastuzumab_2h_R1 3 MDYYDSEHHEDFEFISGTR 19 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ;; 249.47 2.7987000000000004e-25 523895000.0 359047.0 477413.0 432751.0 465750.0 464660.0 466418.0 471808.0 323719.0 421851.0 441064.0 False True 357113.9308458715 493303.4031027475 493678.5792608779 524713.9022455768 523831.69674440613 434175.62148987345 448984.8445584116 347876.55559177435 317891.473563793 412914.9179061112 0.8648608111733862 1.1946853497187404 1.1955939537479505 1.2707554982668041 1.268618967318384 1.051489308479275 1.0873543800141945 0.8424896764589035 0.7698716122338678 1.0 18.65548501598405 1.9063568578735406 2.2248851285891464 0.8506667336728376 1.1592852537988114 0.4790041077862045 0.12463472843749955 0.24126355419633583 2.1935856195549217 0.07349415117670201 0.0363319926492242 80.60404891002676 -1.9063568578735406 0.3086185201259738 MEANKENR ddPTM_BT-474_Trastuzumab_2h_R1 10 MEANKENR 8 1 P16949;P16949-2 P16949 STMN1 Stathmin 0 ;;;;;;;;; 138.08 0.00065725 9395060000.0 11250110.0 12452360.0 10882320.0 10914630.0 9972890.0 10327360.0 13704430.0 11267380.0 17987680.0 14000680.0 False True 11189540.657764735 12866829.27498941 12414456.065178916 12296421.03889777 11242878.427549845 9613453.911190521 13041494.36489343 12108209.110196339 13554857.286563182 13107144.615814788 0.853697810296812 0.9816653170565144 0.9471518342904305 0.9381464383982749 0.8577671763829048 0.7334514261474724 0.9949912621821426 0.9237869471270534 1.03415791035129 1.0 23.643850093685693 1.5431559392470062 1.852930151643147 1.0119308533704567 0.8970964493668965 0.2843636639410616 0.07207416952733539 0.45467360114916106 3.1368078738148664 0.061851219426702325 0.02108596967927436 34.92657014917167 -1.5431559392470062 -0.11483440400356026 MECCDVPAETLYDVLHDIEYR ddPTM_BT-474_Trastuzumab_2h_R1 26 MECCDVPAETLYDVLHDIEYR 21 0 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;H0YGA9;H0YFF3;F5GWK5;F5GY07 Q9Y365 STARD10 PCTP-like protein 0 ;;;;;;;;;;;;;;;;;;;;;;;;; 252.4 1.8593999999999998e-36 14523837400.0 1326766.2 1645387.9 1453591.4 1526013.5 1433443.4 1581928.5 1514879.6 1383600.6 1778380.9 1592906.3 False True 1319623.0381967812 1700153.6415935096 1658244.4342770553 1719206.6526343124 1615983.9203053194 1472573.5062541382 1441599.0863459469 1486851.902553488 1340122.7562781728 1491245.656178304 0.8849132486854316 1.1400895852066288 1.1119860952532314 1.1528661595838048 1.083647025968001 0.9874788235950219 0.9667079869593123 0.9970536352567986 0.8986599563431943 1.0 20.508086504851285 2.6956730439650163 4.235051275000721 0.9700828606570272 1.0852025360511723 0.3293804225978053 0.07430421106807314 0.24534789456153297 9.80111766008796 0.024055288703882342 0.023194168714512214 496.2186055474473 -2.6956730439650163 0.11511967539414514 MEDDKVAEAAIQIFR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEDDKVAEAAIQIFR 15 1 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 0 ;; 169.25 1.1014e-06 356741000.0 344067.0 338380.0 283658.0 294311.0 333771.0 414398.0 365765.0 323806.0 547541.0 411035.0 False True 342214.58150143776 349642.77374497044 323594.5808004647 331570.74242361344 376274.75843428937 385751.6416479645 348071.5495920111 347970.0479735515 412606.8572235044 384802.3943952316 0.8893254992325963 0.9086294130120495 0.8409370251165844 0.8616649668844217 0.9778389217812832 1.0024668434151112 0.9045462155687779 0.9042824396153587 1.0722564704202822 1.0 18.553758250601366 3.238791575350269 24.99999743361907 0.9638256849012979 0.8750883581427271 0.493143831409387 0.0494863462191487 6.249246235374247 676380.9966128337 0.014730513935109239 0.01875063825190939 1732.972117988381 -3.238791575350269 -0.08873732675857082 MEDEGGFPVPQENGQPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEDEGGFPVPQENGQPESPR 20 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 MEDEGGFPVPQENGQPES(1)PR;MEDEGGFPVPQENGQPES(1)PR 190.67 1.8269e-17 345610000.0 490200.0 597110.0 522750.0 510760.0 553650.0 522690.0 469950.0 414330.0 505670.0 472250.0 True False 487560.81766633946 616984.4453893827 596348.6561755469 575422.1636305972 624154.0457593518 486557.67057991226 447216.7231166613 445249.40852510906 381054.40413084935 442110.6006864341 1.1028028210799243 1.3955432066804874 1.34886758030601 1.3015344186209958 1.4117599641136667 1.1005338253017873 1.0115494232038302 1.0070995986836813 0.8618983655655688 1.0 18.75404780129698 2.5080848622351666 3.1220336615377082 0.9770121650712879 1.3177201845334603 0.7643229810489075 0.08963568978908822 0.11778151023251475 2.3351795900725096 0.031307679514279256 0.027505095294978535 322.16982577324455 -2.5080848622351666 0.34070801946217244 MEDEGGFPVPQENGQPES(ph)PRR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEDEGGFPVPQENGQPESPRR 21 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 MEDEGGFPVPQENGQPES(1)PRR 211.94 7.486399999999997e-23 645000000.0 168980.0 205320.0 181940.0 189480.0 178090.0 192000.0 192090.0 183320.0 175570.0 190630.0 True False 168070.2304554429 212153.9520814389 207555.5705491705 213468.14857217812 200768.70587787018 178727.4919193848 182797.87284493967 197000.26928009823 132303.12601746852 178463.83019344584 0.9417607493533183 1.1887784311895282 1.1630119690034146 1.1961423686849562 1.1249826122203417 1.0014773958714949 1.024285271961248 1.103866643826706 0.7413442033271311 1.0 17.44527218293135 1.2595921881423728 24.99770699257949 0.8706721348547961 1.096860579253201 0.4529896118642768 0.09766997005665502 173.0646844310214 205702.21943455812 0.06415551113150832 0.02337645326951632 18.17992922392603 -1.2595921881423728 0.2261884443984048 MEDETQKELETMR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEDETQKELETMR 13 1 A0A0A0MSW4;P48739;P48739-3 A0A0A0MSW4 PITPNB Phosphatidylinositol transfer protein beta isoform 0 ; 167.32 2.9283e-05 386010000.0 357600.0 360850.0 297690.0 310420.0 319500.0 401360.0 410100.0 316900.0 521000.0 409380.0 False True 355674.7213330953 372860.6741115684 339602.1644321348 349719.14017192053 360186.43117513385 373614.92789981427 390261.8962658643 340548.6871855944 392606.53104232566 383253.017912149 0.9280415409921825 0.9728838565781033 0.8861043450673621 0.9125019864868611 0.9398136853228835 0.974851887495002 1.0182878621332132 0.8885740523083279 1.0244055824560283 1.0 18.54793762681597 2.8857619384826614 4.050364887118956 0.9702252925433091 0.9255918958748783 0.28382716741655867 0.04100860634680149 0.3910166428350676 11.034990304729297 0.013047951364323924 0.014039894916494869 768.7089516594708 -2.8857619384826614 -0.0446333966684308 MEDGEFWMSFR ddPTM_BT-474_Trastuzumab_2h_R1 7 MEDGEFWMSFR 11 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;;;;; 250.75 1.9589e-16 1982799000.0 1341970.0 1572715.0 1494479.0 1545658.0 1427238.0 1565648.0 1668476.0 1311676.0 1685857.0 1579951.0 False True 1334744.9826268828 1625061.868048707 1704888.6529556676 1741338.144320113 1608988.2993976085 1457418.4388989639 1587765.4416827215 1409559.9236757706 1270400.1316764315 1479117.1745158965 0.9023929987586916 1.098670136516113 1.1526393461786855 1.177282080366648 1.0878031349505612 0.9853299414064106 1.0734548073937311 0.9529738062416242 0.8588907988930786 1.0 20.49630491547105 1.8382471069762043 1.5092059400688218 0.9226237911595653 1.0834776229814171 0.33601953123301 0.08191440235957097 0.42361184223077575 1.8216932256602638 0.06181411007423989 0.026073271795091738 68.90442405553605 -1.8382471069762043 0.16085383182185187 MEDQFAALHENPDIIIATPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEDQFAALHENPDIIIATPGR 21 0 Q8TDD1-2;Q8TDD1;F8VRX4 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 0 ; 147.26 1.0112e-07 622200000.0 386020.0 472660.0 465220.0 431980.0 478800.0 513610.0 486300.0 450270.0 552340.0 490070.0 False True 383941.7112108538 488392.2023709965 530718.932235271 486668.62370809313 539772.3419300594 478105.3496078914 462775.8111535956 483871.4338247315 416223.20797680947 458793.3130299645 0.836851149105083 1.0645146485365162 1.1567712892986495 1.06075788353155 1.1765043792057317 1.0420931082242377 1.0086803752594602 1.0546610425272895 0.907212891199278 1.0 18.80748483848276 -0.8593243848182809 6.567698134578824 0.9999999985900143 1.0437348549629872 0.0025578700817372457 0.09691056349608712 2.045438715710948e-09 3.114392119557341e-10 0.09151137633473551 0.021569437611182535 0.13825333463724435 0.8593243848182809 0.04373485637297292 MEDSVGCLETAEEVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEDSVGCLETAEEVKR 16 1 P35579 P35579 MYH9 Myosin-9 0 ;; 302.63 7.7261e-46 1301940000.0 676912.0 595708.0 556157.0 499566.0 529049.0 689738.0 632471.0 599891.0 885863.0 700392.0 False True 673267.5810039941 615535.7806669102 634459.0713966967 562811.0043783437 596420.2542309026 642058.0355286077 601875.9614561509 644657.9126047746 667553.9336060412 655692.3829242404 1.0268040296600247 0.9387569486803541 0.9676169617331104 0.8583461071613083 0.9096037559121894 0.9792061830353639 0.917924284512685 0.983171269627604 1.0180901151068753 1.0 19.32265960983367 1.5470882523527378 4.255421920643446 1.0073147780490297 0.9404329198703958 0.2894901497417707 0.042561863822959 0.21549605893652263 8.654165212812314 0.026347235114500385 0.011219368292992084 35.24424830927449 -1.5470882523527378 -0.0668818581786339 MEDTLKR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEDTLKR 7 1 P41250 P41250 GARS Glycine--tRNA ligase 0 ;; 146.54 0.0035467 1391870000.0 1367510.0 1494110.0 1313940.0 1308880.0 1421710.0 1508760.0 1477390.0 1491490.0 1918970.0 1485350.0 False True 1360147.4781046445 1543840.5481414313 1498931.3310287849 1474584.0737975084 1602756.341364628 1404462.9724390174 1405923.0015221287 1602792.557432759 1446065.556380597 1390553.6913278867 0.978133736645432 1.1102344035829108 1.0779384790222697 1.0604294411597859 1.1526029892697647 1.0100026925949535 1.0110526549892263 1.152629033620556 1.0399206915913475 1.0 20.407228019666476 4.7525460482053505 23.86580456398268 1.0748104791931903 0.9781336119219687 0.1949307665484129 0.05353304713076488 1936.073417298389 3303754.9009088385 0.012340778595103276 0.2447141304868562 56564.77294881914 -4.7525460482053505 -0.0966768672712216 MEDYLQLPDDYDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEDYLQLPDDYDTR 14 0 P49750;P49750-1;F8VU51 P49750 YLPM1 YLP motif-containing protein 1 0 98.803 0.0056604 26804000.0 29018.0 33012.0 36182.0 36807.0 32652.0 34444.0 33523.0 30028.0 37030.0 34616.0 False True 28861.770312202887 34110.78446382457 41276.11110041823 41466.76242609328 36810.038656433375 32062.967352454638 31901.36441970388 32268.8418390944 27904.452676578312 32406.777243751378 0.8906090875718895 1.0525818166754535 1.273687623732379 1.2795706933212199 1.1358747085389687 0.9893908027721876 0.9844041010234996 0.9957436247480124 0.8610684261101219 1.0 14.984007935668414 2.7076065957387083 4.517953875273434 0.9678742215443866 1.1397106001851596 0.3456842299627102 0.10987418826954028 0.25237668591348017 12.710430306166474 0.038794983998227874 0.03765217667621225 510.04277004749474 -2.7076065957387083 0.17183637864077295 MEEADALIESLCR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEEADALIESLCR 13 0 A0A087WW66;Q99460-2;Q99460;H7C378 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;; 206.36 1.4542e-07 66360000.0 107307.0 133316.0 120123.0 116366.0 114294.0 128382.0 126079.0 109751.0 136869.0 118923.0 False True 106729.27103492856 137753.34246877625 137035.27427216686 131097.9236687253 128848.6634263872 119507.25451872127 119980.07710144816 117941.17692428562 103139.46890063734 111333.23232489722 0.9586470167637531 1.2373065938369485 1.2308568736445635 1.177527328822628 1.1573243741848411 1.0734194276329845 1.0776663409117357 1.0593528496514395 0.9264032557651025 1.0 16.764524767512864 1.9424671008838177 0.9706924023283057 0.9740186287002586 1.1616385335988357 0.4288750938449304 0.07825236786707504 0.5026769348544298 0.8709738449281063 0.06380886844795161 0.0292773150415016 87.59253611332188 -1.9424671008838177 0.18761990489857716 MEEDPDDVPHGHITSLAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEEDPDDVPHGHITSLAVK 19 0 P41227-2;P41227;F8W808;A8MWP7 P41227-2 NAA10 N-alpha-acetyltransferase 10 0 ; 113.56 0.00010107 2498000000.0 2861700.0 3060500.0 2952200.0 2893300.0 2855200.0 3555200.0 3563300.0 2427700.0 4092700.0 3344700.0 False True 2846292.925164761 3162366.8923886796 3367844.0990175945 3259591.483343265 3218792.7959037283 3309437.392040606 3390929.565872108 2608867.3016108125 3084108.9243703 3131238.382458267 0.9089991171257292 1.0099412775803975 1.0755629842444552 1.0409911623477963 1.0279615930668058 1.0569100744870275 1.0829356157834151 0.8331742853645808 0.9849486202162078 1.0 21.578301914945094 1.7522458337068163 24.99999999943572 0.9245605042078734 1.0315876544019456 0.29592615185203675 0.06204760254348613 4.339408130247708 7938.5834604915435 0.028058642388449854 0.015560026103144175 56.525684962241456 -1.7522458337068163 0.10702715019407216 MEEEEQTCDPDSSLHWS(ph)SSYSPETFR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEEEEQTCDPDSSLHWSSSYSPETFR 26 0 Q96N95;K7ERR8;Q96N95-2;Q96N95-3 Q96N95 ZNF396 Zinc finger protein 396 1 MEEEEQT(0.113)CDPDS(0.113)S(0.113)LHWS(0.132)S(0.132)S(0.132)Y(0.001)S(0.132)PET(0.132)FR 47.757 0.090148 99999000.0 0.0 0.0 0.0 0.0 2989.2 3973.3 0.0 4171.9 6889.5 0.0 True False 0.0 0.0 0.0 0.0 3369.8569016235047 3698.635123142145 0.0 4483.2283624789525 5191.675039570251 0.0 0.0 MEEEER ddPTM_BT-474_Trastuzumab_2h_R1 1 MEEEER 6 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 122.78 0.044374 158160000.0 120990.0 152250.0 141920.0 137290.0 137970.0 135800.0 138340.0 139670.0 167570.0 146250.0 False True 120338.60328325264 157317.5492129313 161901.1024092463 154670.89992333928 155539.6616877409 126412.46563881484 131647.9656898795 150092.88462988927 126274.61882296062 136916.1997890755 0.878921584652793 1.1490061034069368 1.1824831733473538 1.12967567140788 1.1360208793945168 0.9232834816738849 0.9615222003874493 1.0962390488569866 0.9222766846983145 1.0 17.062933629379376 2.7516816972318936 24.797511044675414 0.9940469518335471 1.1049715126887598 0.2763680448316381 0.09072761510806701 997.6386886426446 1885434.7264113836 0.0281728712030629 0.029706139111776865 564.5230733483392 -2.7516816972318936 0.11092456085521274 MEEEGTEDNGLEDDS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 MEEEGTEDNGLEDDSR 16 0 Q14151;K7ERX3 Q14151 SAFB2 Scaffold attachment factor B2 1 MEEEGTEDNGLEDDS(1)R;MEEEGTEDNGLEDDS(1)R;MEEEGTEDNGLEDDS(1)R 295.79 1.1818e-45 1114620000.0 892350.0 1056040.0 962520.0 965410.0 1033530.0 945280.0 939550.0 935880.0 969030.0 930920.0 True False 887545.686749406 1091189.6530103388 1098034.4496261834 1087630.8070142837 1165143.9192877482 879935.0185497721 894100.377070452 1005720.1179023472 730225.5408367455 871507.8885992913 1.0184023556870967 1.252070884595348 1.2599248543704762 1.247987334644039 1.3369287123268567 1.0096695968685092 1.0259234468978495 1.1540000165905153 0.8378874711167351 1.0 19.733154197642126 2.7214247410855976 24.686944558310756 1.0281292503057682 1.2281069726403848 0.5103196539116324 0.10534341411102004 627.7313110911516 904345.0844677126 0.03399189109695968 0.03212258396654223 526.5319642349749 -2.7214247410855976 0.19997772233461664 MEEEGTEDNGLEDDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEEEGTEDNGLEDDSR 16 0 Q14151;K7ERX3 Q14151 SAFB2 Scaffold attachment factor B2 0 199.41 8.8849e-11 283780000.0 253030.0 255950.0 248810.0 257340.0 268210.0 255320.0 264650.0 197220.0 285510.0 243570.0 False True 251667.71459427604 264469.1410249576 283840.2853047108 289919.2176143352 302364.9536947814 237670.3293586318 251847.8684388222 211937.55786286818 215149.8861379932 228025.1540692318 1.103684001975791 1.159824415444363 1.24477620227167 1.2714352449305284 1.3260157850961432 1.042298733790008 1.104474063253379 0.9294481511391538 0.9435357560274711 1.0 17.798833455183235 2.2561036250032163 1.6810240104017133 0.9599114334965547 1.2174936609275866 0.6821213033350103 0.07359132140361835 0.21346094534673524 1.2045733270655032 0.04026125898472618 0.02533102005250816 180.34480019358617 -2.2561036250032163 0.2575822274310319 MEEEQHHWDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEEEQHHWDDR 11 0 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ; 101.89 0.0020633 223402000.0 305160.0 341190.0 294480.0 298830.0 306280.0 322780.0 356970.0 270270.0 392530.0 327100.0 False True 303517.0524664637 352546.30289628974 335940.22433395474 336661.84736027 345282.94253621245 300466.97834239085 339701.997342174 290438.91980325186 295796.24113252194 306224.1979556009 0.9911595964420495 1.151268597484922 1.0970400986491025 1.0993966172754321 1.127549504060664 0.9811993315628023 1.109324474062063 0.948451891595328 0.9659466596934613 1.0 18.224228764104026 2.000202755030858 1.2191835508055637 0.9669386506543133 1.0919380738385924 0.38749313809498054 0.05667005898824228 0.4215648055990175 1.1603409057186702 0.03963664631612969 0.018444859382262296 100.04669697080068 -2.000202755030858 0.12499942318427915 MEEEQHHWDDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEEEQHHWDDRR 12 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 98.105 0.0017156 109420000.0 32150.0 50032.0 39294.0 46650.0 37773.0 40616.0 38904.0 31612.0 43012.0 38135.0 False True 31976.907972200806 51697.28487501735 44826.25365042932 52555.88521686772 42583.16765188835 37808.311519779854 37022.064892287686 33971.047962483426 32412.26893127159 35701.1916509839 0.8956818104226935 1.4480548823247084 1.2555954459070258 1.4721045093019833 1.1927660025520403 1.0590209954164902 1.0369980154784941 0.95153820899273 0.9078763882207369 1.0 15.12368460955376 2.6535206109323424 2.08991735563031 0.9702255662413297 1.282731535926686 0.4412633404406354 0.15023227157410807 0.27764352400011655 2.398171283823396 0.054283168165812266 0.05065880298984088 450.31935222842736 -2.6535206109323424 0.31250596968535627 MEEFKDQLPADECNK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEEFKDQLPADECNK 15 1 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ; 216.99 1.9447e-12 718190000.0 844690.0 582000.0 591690.0 452940.0 650150.0 1329960.0 632020.0 584490.0 1228770.0 809330.0 False True 840142.2828938807 601371.5181735702 674994.8089383247 510282.1575590158 732942.7487590394 1238022.99558909 601446.7780491374 628107.6117800814 925956.0981744303 757677.866497726 1.1088383599976814 0.7937034256435879 0.8908730725610428 0.6734816735741974 0.9673540447300888 1.633970121513119 0.7938027552913116 0.8289903131042123 1.2220973306961573 1.0 19.53122507852381 3.001978086429332 24.97737749127737 1.065054271144893 0.8578813424098113 0.16113787046912553 0.24167195213525688 135.95618399458357 1716677.162606886 0.07341824980123456 0.08718926227001858 1004.5651007931879 -3.001978086429332 -0.20717292873508164 MEEIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEEIGR 6 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;P12814-3;P12814;P12814-2;P12814-4;H9KV75;H0YJ11;H0YJW3 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 ; 146.21 0.039621 851660000.0 2326100.0 2274200.0 2136700.0 2019810.0 1934870.0 2203100.0 2086930.0 2064680.0 2498700.0 2315200.0 False True 2313576.5360540063 2349895.372217069 2437528.787470662 2275517.7389042126 2181264.2256270153 2050804.8825395645 1985977.2230532065 2218756.9058326045 1882928.8658646047 2167441.9538575583 1.0674226047605848 1.0841791486202361 1.1246108727998043 1.0498632892356372 1.0063772281167007 0.9461867612600162 0.9162770054896346 1.0236753523589026 0.8687332375907072 1.0 21.047561926552973 3.185621532326242 2.103030710427576 0.9560087489799243 1.090722654924475 0.6788096766770596 0.04264523615853889 0.18061259319723294 1.6402436520664718 0.013175585958976246 0.017454186082798084 1533.280217204157 -3.185621532326242 0.1347139059445508 MEEIVEGCTGALHILAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEEIVEGCTGALHILAR 17 0 P14923;A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0;A0A2R8Y7Z0 P14923;A0A2R8Y804 JUP;CTNNB1 Junction plakoglobin;Catenin beta-1 0 ; 205.42 7.9018e-12 198540000.0 189478.0 273190.0 252520.0 236620.0 267280.0 297890.0 241880.0 223370.0 292310.0 247530.0 False True 188457.87150098506 282282.9640031575 288072.621056813 266576.06773880497 301316.52370732283 277297.56545763277 230179.34032866877 240039.00364987718 220274.11725332457 231732.4234789049 0.8132563785064837 1.2181418541495308 1.2431260879772263 1.1503615408530519 1.3002777910133594 1.1966282546683664 0.9932979462825257 1.0358455672549787 0.9505537203056809 1.0 17.822100391404295 2.2341193093228635 24.933880285783136 1.0018110101256736 1.1671492337911438 0.27453218666482926 0.12503933790359273 141.25150765118806 792989.0588415598 0.045617459691017534 0.03484593534125568 171.4428230317147 -2.2341193093228635 0.16533822366547013 MEELHNQEMQK ddPTM_BT-474_Trastuzumab_2h_R1 8 MEELHNQEMQK 11 0 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;;;;;; 216.03 1.2382e-11 7796870000.0 10596620.0 9667050.0 9310190.0 8524130.0 8391180.0 10448780.0 10139220.0 9760440.0 12900010.0 10101970.0 False True 10539568.975315168 9988811.915394884 10620983.82637782 9603283.984001257 9459747.034579514 9726480.43238244 9648747.193018211 10488813.595310055 9720975.38677795 9457253.625868354 1.1144428808048845 1.0562064115603882 1.1230516010828264 1.0154410956827324 1.000263650401036 1.0284677578887884 1.0202483273395635 1.1090760605827554 1.0278856601866149 1.0 23.172989856949048 3.7332446844262552 24.99651976802494 1.035997757614854 1.0937309096103975 0.4575468000826044 0.03376849061061356 497.01576870235283 2337060.2129469197 0.009735346569487829 0.015619117234345961 5410.590734020436 -3.7332446844262552 0.05773315199554352 MEELHNQEMQKR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEELHNQEMQKR 12 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;; 144.47 3.9254e-05 1114910000.0 981270.0 1017310.0 982930.0 1015280.0 985250.0 1043410.0 1016720.0 1010130.0 1481280.0 1115010.0 False True 975986.951349346 1051170.5483731194 1121318.0002192822 1143814.343900996 1110715.7474657302 971281.522622945 967537.3693524245 1085511.0299362065 1116238.3921350783 1043849.1071919125 0.9349885386929876 1.0070138884353723 1.0742146470151908 1.0957659838192542 1.064057764492128 0.9304807715320239 0.9268938994020158 1.0399118248578763 1.069348418698084 1.0 19.993481748627232 2.7822934176914833 24.998706135174075 0.9938901607365842 1.0391731626474447 0.11448559312477702 0.05770362343397977 1092.4100374654754 624445.2022763856 0.019258907382349488 0.02042699957719541 605.7499928613757 -2.7822934176914833 0.04528300191086054 MEELHNQEVQK ddPTM_BT-474_Trastuzumab_2h_R1 8 MEELHNQEVQK 11 0 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;;;;;; 160.67 2.7202e-05 12021180000.0 15376901.0 14212901.0 13124372.0 12413437.0 12204702.0 15311505.0 15351925.0 14557616.0 18574240.0 15233980.0 False True 15294113.473550312 14685968.817904918 14972169.498513553 13984976.851421617 13758898.456763754 14253056.698755827 14609293.73770135 15643979.227996213 13996867.434064498 14261734.35393355 1.072388048605885 1.029746344549908 1.049814077793705 0.9805944006778109 0.9647423037976367 0.9993915427841825 1.0243700643373672 1.096919830348784 0.9814281409752946 1.0 23.765646101229763 -0.7216527651240177 7.887130123808772 1.000000425841593 1.0250368778775827 0.022131962154321116 0.04026884672698964 0.0 0.0 0.04189332362183988 0.009874351073148522 0.18982230157904154 0.7216527651240177 0.025036452035989587 MEELHNQEVQKR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEELHNQEVQKR 12 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;; 139.89 3.8435e-05 1701104000.0 1543841.0 1511117.0 1392480.0 1399415.0 1439091.0 1562346.0 1704712.0 1396584.0 2202197.0 1761307.0 False True 1535529.1315928604 1561413.6158554847 1588529.0803468665 1576580.7955147475 1622350.7086893716 1454344.6983868927 1622248.5679277575 1500804.1897898556 1659495.0572779584 1648898.8793292115 0.9312451787325666 0.9469432209758571 0.963387810047573 0.956141589565587 0.983899454980138 0.8820096348046125 0.9838375101496244 0.9101857055057238 1.0064262145372174 1.0 20.653071495835448 1.2171642396653222 24.995443239284334 1.0032132031093255 0.9451989640707593 0.38143835791179426 0.029796747096720522 267.33780197849717 312298.37215601595 0.02627116022045704 0.006592976542602174 16.48785804537204 -1.2171642396653222 -0.05801423903856617 MEES(ph)DEEAVQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEESDEEAVQAK 12 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 MEES(1)DEEAVQAK;MEES(1)DEEAVQAK 214.23 4.6459e-11 209916000.0 481900.0 380300.0 341990.0 332450.0 338550.0 452110.0 415070.0 425220.0 573170.0 449900.0 True False 479305.5039441228 392958.05560379516 390139.2193696323 374538.1359131335 381662.335756937 420856.69985246356 394991.4783786202 456952.075623409 431919.93358450994 421186.9968212309 1.1379874202231361 0.9329776526092108 0.9262850522786282 0.8892442994200576 0.906158876312438 0.9992157949526929 0.9378054910519253 1.08491496430826 1.02548259287272 1.0 18.684101371600292 1.7485800456956049 24.999999999999794 1.0427508345062555 0.9554962901042551 0.19583530623654333 0.0690035555834069 3.5751231296132597 8938.80779654187 0.03180524842419628 0.017637640419429484 56.050571578807904 -1.7485800456956049 -0.08725454440200042 MEES(ph)GAQLLLEMLTFNPHKR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEESGAQLLLEMLTFNPHKR 20 1 F8VZ13 F8VZ13 CDK4 1 MEES(0.999)GAQLLLEMLT(0.001)FNPHKR 45.784 0.075866 397060000.0 49051.0 107700.0 85410.0 113030.0 108130.0 87433.0 78917.0 57879.0 54007.0 77832.0 True False 48786.914866078405 111284.7293939752 97434.98560297163 127339.58641077299 121899.71456327765 81388.96250514359 75099.48321778401 62198.224883606796 40697.69850672334 72864.69512467239 0.6695549165834481 1.5272791466919013 1.3372043269550387 1.74761708935848 1.6729599205034171 1.1169876215893866 1.030670382814172 0.8536126415843073 0.5585379646080874 1.0 16.152932339423486 2.222588371194159 1.9347593680145236 0.8040115726210559 1.4093960184119885 0.4138564704596447 0.2979283554482074 0.31945762496504615 2.398676133756955 0.149618291182296 0.0953607589038845 166.95074876974513 -2.222588371194159 0.6053844457909325 MEESMKK ddPTM_BT-474_Trastuzumab_2h_R1 1 MEESMKK 7 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7;M0QYL3 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 86.794 0.031772 537870000.0 350140.0 377100.0 323480.0 335370.0 326900.0 370600.0 395640.0 361870.0 586150.0 404530.0 False True 348254.8851442114 389651.5455382363 369023.172261436 377827.8076137394 368528.7773118972 344981.29429856275 376501.3817084286 388874.57693862723 441701.18650759885 378712.54906444304 0.9195757732468252 1.0288846950036816 0.9744149571305644 0.9976638179725249 0.9731094948458839 0.9109317743781961 0.9941613570464544 1.0268330898970421 1.1663230795989215 1.0 18.530743701767094 1.5641515262770986 3.3991003576566543 1.086357738030152 0.9724788758302537 0.43887949117610625 0.05026631671281723 0.16384631065291685 4.310157344451701 0.030667919422939307 0.012377246825677132 36.65654478106256 -1.5641515262770986 -0.11387886219989818 MEGGGAEVHAQLPSLEGDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEGGGAEVHAQLPSLEGDLR 20 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 137.12 4.1604e-06 348780000.0 265610.0 311450.0 297160.0 296000.0 258270.0 342190.0 302870.0 275300.0 318590.0 325590.0 False True 264179.9852720453 321816.42497449927 338997.54503897764 333473.5696504365 291159.1536137772 318535.2107286161 288219.02102424344 295844.2839450746 240077.76338728316 304810.5674483766 0.8667021864876367 1.055791561521248 1.1121581114355263 1.0940354609159484 0.955213449622571 1.0450267961348285 0.9455676797460667 0.9705840792254665 0.7876293968316674 1.0 18.21755339479131 1.9048682129005747 1.5625115755851315 0.9037391001818577 1.0285953582394238 0.2312859977769144 0.08430943616834713 0.5252631425093331 2.3953978403223672 0.05790726002090666 0.02591368545607042 80.32823283634198 -1.9048682129005747 0.12485625805756617 MEGGGAEVHAQLPSLEGDLRGPDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEGGGAEVHAQLPSLEGDLRGPDVK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 124.19 9.2866e-05 466810000.0 411760.0 451740.0 430290.0 419700.0 390880.0 548480.0 518630.0 445150.0 671380.0 546230.0 False True 409543.1299108363 466775.89281740366 490871.09185227327 472833.9769671893 440656.2510727273 510564.86858304316 493541.88554100273 478369.3534258979 505927.39503108716 511369.13374896924 0.8008757331682845 0.9127963774335736 0.9599153712183996 0.9246431701904464 0.8617185160202594 0.9984272316945886 0.9651382005064117 0.9354677900069133 0.9893584920192828 1.0 18.964005556543164 5.696479081225448 1.0410138519518064 0.9523369052724476 1.9130727682042517e-17 0.5809744294528953 0.039210635383829635 8.298061405987752 1.611631187180777 0.01155499966003303 14.047266482307228 497140.4272570852 -5.696479081225448 -0.9523369052724476 MEGGTENDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MEGGTENDLR 10 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 83.456 0.036271 225620000.0 310300.0 316230.0 281450.0 291260.0 288970.0 294070.0 320820.0 295950.0 350940.0 329930.0 False True 308629.37927757076 326755.5243849285 321075.7135927449 328133.4861364395 325768.61664062104 273741.6330663205 305300.71094858454 318035.2918036497 264455.5393550745 308873.5849327158 0.9992093669803513 1.0578940392591618 1.0395052515179866 1.0623552875456126 1.0546988558817214 0.8862578298042276 0.9884325686675034 1.0296616716930638 0.8561934469491226 1.0 18.236656970471714 2.778976401772877 24.99038338530329 0.9632466105892873 1.0444857409462682 0.42918143109719864 0.05144115880396242 551.0195433501486 340712.1860485001 0.01570612181137993 0.016658708381832112 601.1410724378615 -2.778976401772877 0.08123913035698094 MEGS(ph)DFESSGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEGSDFESSGGR 12 0 A0A1B0GW41;Q8WYH8-2;Q8WYH8;E9PEN0 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 MEGS(1)DFESSGGR;MEGS(0.999)DFES(0.001)SGGR 216.81 3.2418e-08 235350000.0 236060.0 257230.0 216280.0 238500.0 270550.0 276720.0 250410.0 249870.0 308160.0 251310.0 True False 234789.07918873135 265791.74505118135 246730.3440605396 268694.0755460439 305002.9388245144 257590.99772881347 238296.71164090434 268516.5682141511 232218.09713244313 235271.18064268428 0.997950869066768 1.129725044627756 1.048706192516026 1.1420611517826331 1.2963888649317168 1.094868470609782 1.0128597603410467 1.1413066720736949 0.9870231300667548 1.0 17.8439650840331 -0.6963470330759349 5.358939263404153 0.9999999902368091 1.1010271253718134 0.09112080656546195 0.08744514389034526 9.981567759200632e-09 2.56107690317512e-09 0.08373145042350069 0.01973569007242138 0.20121157795358002 0.6963470330759349 0.10102713513500428 MEIATKDPLNPIKQDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 MEIATKDPLNPIKQDVK 17 2 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 186.05 3.0655000000000004e-10 1054000000.0 1356200.0 1374400.0 1428400.0 1264200.0 1221700.0 1800700.0 1878200.0 1712800.0 3248400.0 2043700.0 False True 1348898.369887986 1420146.073157657 1629506.3041246298 1424247.5903786551 1377276.2534167788 1676221.8473918564 1787344.2905792368 1840617.8334221705 2447875.3463299233 1913269.3163004003 0.7050227369434262 0.7422614584671892 0.8516868431651484 0.7444051803081525 0.7198548796465066 0.8761034492692793 0.9341833245072582 0.9620275712053373 1.2794201660345788 1.0 20.867608534458142 1.9332445253496817 1.2010491235133678 1.1169786905446966 0.7591772020925021 0.7383759294336958 0.08528530744581685 0.2322649446763353 0.6184214403007815 0.0639363891419198 0.02832104143186505 85.75205280552403 -1.9332445253496817 -0.3578014884521945 MEIIELANHPYFVGVQFHPEFSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEIIELANHPYFVGVQFHPEFSSR 24 0 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 0 ; 266.38 1.1839e-44 552550000.0 310710.0 329860.0 302790.0 258380.0 292470.0 309260.0 292840.0 206070.0 318780.0 303030.0 False True 309037.17188312614 340839.19069541944 345420.20010214037 291090.8815077017 329714.3208944958 287881.58411973435 278674.21044256433 221447.9898022571 240220.9404331524 283690.3659629643 1.089346727845777 1.201447886813033 1.2175958070681712 1.0260865945151747 1.1622330556601979 1.0147739178330688 0.9823182027934821 0.7805974977351436 0.8467715835810694 1.0 18.113957632403842 2.3093993079971726 1.653596805227263 0.8564521365507913 1.143138773502586 0.6807952571160226 0.07679274914838599 0.1896144426543925 1.0443107217279928 0.0384115579304487 0.025371016160768124 203.89158782732173 -2.3093993079971726 0.28668663695179464 MEISAELPQT(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEISAELPQTPQR 13 0 Q8IWV7;H3BS20;H3BNQ6;A0A087WTJ9;Q8IWV7-2 Q8IWV7 UBR1 E3 ubiquitin-protein ligase UBR1 1 MEISAELPQT(1)PQR;MEISAELPQT(1)PQR;MEISAELPQT(1)PQR 211.7 2.2147e-07 780720000.0 1626580.0 1929720.0 1650380.0 1922920.0 1874790.0 1888320.0 1886220.0 1746670.0 1933340.0 2014130.0 True False 1617822.6740100274 1993949.563659627 1882739.158639882 2166361.474838569 2113533.3937490736 1757784.8830271512 1794976.332539861 1877015.3848105446 1456894.2624287335 1885586.4990165518 0.8579944090890662 1.0574691559891807 0.9984899444400165 1.1489059112209694 1.1208891211574807 0.9322218227293965 0.9519458977225657 0.9954544041281174 0.772647801195327 1.0 20.84658190322451 2.7069085908857375 24.047410071060543 0.9374091155722937 1.0420061515343142 0.23985685593449524 0.09397582852390116 641.9733312428823 487733.92402241594 0.0305022864114786 0.028760769156195375 509.2236797701137 -2.7069085908857375 0.10459703596202052 MEISMPPPQIYVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 MEISMPPPQIYVEK 14 0 P56597 P56597 NME5 Nucleoside diphosphate kinase homolog 5 0 ;; 63.76 0.06652000000000001 1709050000.0 1756710.0 3827820.0 3289800.0 3728230.0 3721020.0 2838010.0 2768090.0 2614110.0 1606100.0 3152690.0 False True 1747252.0685488288 3955226.6747339475 3752975.244545796 4200223.535735964 4194869.840786524 2641825.048656942 2634186.9115693104 2809188.16238161 1210298.175637386 2951482.625046292 0.5919913109843987 1.3400813005537895 1.2715559335155948 1.423089365355856 1.4212754651471922 0.895084059190593 0.8924961608161237 0.9517888191320625 0.41006447585589406 1.0 21.493008418196446 2.60975687812949 5.853973655231922 0.8357862226208674 1.2310650619171513 0.33357369631072786 0.2684488391892579 0.27486462450198024 11.970176448746376 0.0872337020027396 0.08193009373445492 407.15228656346784 -2.60975687812949 0.3952788392962838 MEITIRNS(ph)PYR ddPTM_BT-474_Trastuzumab_2h_R1 3 MEITIRNSPYR 11 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;Q9UQ88-9;A0A087X1I0;A0A087WYI9 P21127-2 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 MEITIRNS(1)PYR;MEIT(0.003)IRNS(0.997)PYR;MEITIRNS(1)PYR 96.707 0.0041251000000000005 807984000.0 546121.0 770160.0 809890.0 689269.0 417702.0 512080.0 680535.0 504189.0 1085500.0 656386.0 True False 543180.745215747 795794.3100284478 923915.4723099241 776530.3847276574 470893.8737862778 476681.1149066592 647614.9221538396 541814.143399866 817993.0699547863 614494.883519673 0.8839467337865266 1.2950381384306033 1.5035364770133923 1.2636889346903681 0.7663104875489205 0.7757283708797524 1.0538979892630893 0.8817227904266509 1.3311633536629737 1.0 19.229041472745855 3.263077321967717 24.606161045637293 0.9539705333762696 1.2598006214484359 0.28349312629216783 0.20700606145102943 226.5473524481087 227372.078689539 0.05783079692790933 0.07826477597578904 1832.6406774250636 -3.263077321967717 0.3058300880721663 MEITIRNS(ph)PYRR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEITIRNSPYRR 12 2 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;Q9UQ88-9;A0A087X1I0;A0A087WYI9 P21127-2 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 MEITIRNS(1)PYRR;MEITIRNS(1)PYRR 160.8 3.4999e-05 503120000.0 208170.0 295930.0 274630.0 333590.0 301590.0 280780.0 319740.0 252760.0 375740.0 328570.0 True False 207049.23584986123 305779.85115653754 313295.5168732482 375822.45979624626 339995.6988360202 261370.33948502562 304272.95467458543 271622.23468927364 283143.9116580488 307600.3812970707 0.6731111157170498 0.9940815088302022 1.0185147220954753 1.2217880166841824 1.105316246365973 0.8497074625944706 0.9891826316714746 0.8830360792919483 0.9204927200158357 1.0 18.230697766081974 -0.29322890744731833 8.588459065463438 0.9999999987076832 0.9679573221990697 0.004877970881907445 0.14048784780733828 0.0 0.0 0.13893904954567413 0.03274824827911343 0.5090624842509539 0.29322890744731833 -0.03204267650861348 MEIVDHALHALTDEVIIPHSGWER ddPTM_BT-474_Trastuzumab_2h_R1 2 MEIVDHALHALTDEVIIPHSGWER 24 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30 O60716-13 CTNND1 Catenin delta-1 0 ; 318.65 3.224199999999999e-74 1029750000.0 187053.0 293010.0 279490.0 302450.0 254518.0 303530.0 322450.0 31279.0 289250.0 144075.0 False True 186045.92743154202 302762.6607217148 318839.76262937096 340740.1389891032 286929.35865362367 282547.685532765 306851.86162137944 33613.197811543694 217968.21325142527 134880.01015118675 1.379343960776719 2.244681479355975 2.3638770657859833 2.526246391938792 2.1272934242220556 2.0948077125443407 2.2749988028428363 0.24920815007254762 1.6160156942982515 1.0 17.04131702440793 1.7550380899712175 24.999999999995122 0.9106754648210484 2.1688722791716124 0.6276578687988345 0.4190877512693559 3.4244314644076903 5201.605870328619 0.18405188680714843 0.10206701120698686 56.890282450557535 -1.7550380899712175 1.258196814350564 MEIYRPHK ddPTM_BT-474_Trastuzumab_2h_R1 1 MEIYRPHK 8 1 Q92769;Q92769-3;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19;Q13547;Q5TEE2 Q92769;Q13547 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase 1 0 88.177 0.0088925 444060000.0 569510.0 691700.0 620260.0 623080.0 610990.0 747170.0 753440.0 627870.0 818340.0 756660.0 False True 566443.82143851 714722.8163585195 707587.2166034328 701961.8641141682 688795.954878544 695519.8965489938 716993.2287796938 674724.8476592582 616671.072194197 708369.3109907815 0.7996447794247844 1.008969199073364 0.9988959228255458 0.9909546520759752 0.9723684301274138 0.9818605715374434 1.0121743244026908 0.9525043465188158 0.8705502378860427 1.0 19.43414218534021 4.744984945884282 24.902315295356054 0.976718676723693 0.7996446957338446 0.6457642275760181 0.03929013840169319 434.39220951316145 1683766.598355417 0.009423771849440812 0.08848320400740159 55588.49880825026 -4.744984945884282 -0.1770739809898484 MELGAPEEMGQVPPLDS(ph)RPSSPALYFTHDASLVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 MELGAPEEMGQVPPLDS(0.333)RPS(0.333)S(0.333)PALYFT(0.001)HDASLVHK;MELGAPEEMGQVPPLDS(0.299)RPS(0.299)S(0.299)PALY(0.048)FT(0.052)HDAS(0.002)LVHK 140.5 1.8322e-10 315087000.0 76055.0 72658.0 89248.0 75068.0 76669.0 102193.0 96447.0 65633.0 122718.0 91253.0 True False 75645.5283305049 75076.37760731157 101813.34264247758 84571.6011031045 86432.34269723424 95128.63844644623 91781.49014668085 70530.86773762105 92475.79323695219 85429.15541437618 0.8854767200212204 0.8788144661287097 1.191786833764533 0.989961807451893 1.0117429146758163 1.11353832289483 1.0743579250139197 0.8256065203443647 1.08248516315532 1.0 16.382440898966156 4.369944616563894 21.56554356287261 1.0228179623057927 0.8819297622384076 0.3039918532519178 0.0914545911451146 4.498524786626458 879.8404994981889 0.02345929386722665 0.06424604128057791 23439.29886426765 -4.369944616563894 -0.14088820006738512 MELGAPEEMGQVPPLDSRPS(ph)SPALYFTHDASLVHK ddPTM_BT-474_Trastuzumab_2h_R1 3 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 MELGAPEEMGQVPPLDS(0.016)RPS(0.492)S(0.492)PALYFTHDASLVHK;MELGAPEEMGQVPPLDS(0.011)RPS(0.476)S(0.476)PALY(0.009)FT(0.014)HDAS(0.014)LVHK;MELGAPEEMGQVPPLDS(0.085)RPS(0.398)S(0.398)PALY(0.01)FT(0.049)HDAS(0.06)LVHK 241.74 1.126e-47 2423540000.0 1336900.0 1283450.0 1367300.0 1248060.0 1241570.0 1736360.0 1453760.0 941250.0 1827180.0 1540270.0 True False 1329702.278943552 1326168.8573880906 1559803.9552153517 1406064.2680335254 1399676.580138063 1616329.5201517874 1383436.0748974953 1011490.8545706552 1376895.9719576112 1441968.6499085072 0.9221436811597266 0.9196932661970396 1.081718354497042 0.9751004421092928 0.9706706038490313 1.1209186276375311 0.959407872692152 0.7014652188415013 0.9548723351544259 1.0 20.459608368359785 1.9821983389516615 24.933085286137118 0.8468156095090322 0.9999268391086472 0.18668614078675272 0.09568554622704421 781.7011878776872 1094853.5422897981 0.03777220353899169 0.024941522693684836 95.98388824751764 -1.9821983389516615 0.15311122959961498 MELGAPEEMGQVPPLDSRPSSPALYFTHDAS(ph)LVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 MELGAPEEMGQVPPLDS(0.039)RPS(0.185)S(0.185)PALY(0.16)FT(0.185)HDAS(0.247)LVHK 115.27 3.7828e-06 2380800000.0 568990.0 493440.0 565100.0 529850.0 503450.0 696330.0 676450.0 414020.0 835350.0 654380.0 True False 565926.6210607326 509863.85210922046 644661.1680627472 596928.9556732555 567561.3733180629 648194.3460845068 643727.5292100548 444916.2747509609 629489.1856165192 612616.9081570954 0.9237855069380654 0.8322719228286045 1.0523071751350268 0.9743919041819573 0.9264539808824884 1.058074528230762 1.0507831576940112 0.726255297277674 1.0275413186197877 1.0 19.224625660142475 MELLAHLLGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MELLAHLLGEK 11 0 Q9Y2Q3-3;Q9Y2Q3;Q9Y2Q3-2;Q9Y2Q3-4 Q9Y2Q3-3 GSTK1 Glutathione S-transferase kappa 1 0 ; 132.32 0.0001849 565230000.0 1113210.0 1214710.0 1149550.0 1052200.0 944090.0 1377530.0 1303430.0 1033360.0 1668560.0 1224140.0 False True 1107216.6010492581 1255140.8880422984 1311396.6479322815 1185408.4121155029 1064314.2654401613 1282304.5934568252 1240378.1113138623 1110474.5704957573 1257365.7455585087 1146014.3371610192 0.9661455054673458 1.0952226750946368 1.1443108566869749 1.034374853504951 0.9287093807890304 1.118925437384521 1.0823408321283372 0.9689883751774839 1.0971640622519054 1.0 20.128193662303563 3.5150419873465117 24.91635888318773 1.0298489772446071 1.0742454619167057 0.050866204707963325 0.06861510558891318 1458.8455060186607 958551.3670566643 0.018220099665453095 0.02821913544996071 3273.723435231719 -3.5150419873465117 0.04439648467209856 MENDESAKEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MENDESAKEEK 11 1 A0A0A0MQW0;A0A0A0MR39;Q9P2K5-2;Q9P2K5;A0A087WUT0;A0A087WWC8;Q9P2K5-4 A0A0A0MQW0 MYEF2 Myelin expression factor 2 0 ; 131.26 0.0011426 280430000.0 608930.0 457720.0 415620.0 388910.0 395230.0 570110.0 582960.0 536280.0 942250.0 532950.0 False True 605651.5885384831 472954.9335024171 474135.683366199 438145.9661241588 445560.19778825657 530699.6375945861 554759.9976765376 576299.9367746626 710045.1130031314 498936.67471854883 1.2138846856269534 0.9479257738854574 0.9502923064007269 0.8781594705807462 0.893019536075591 1.063661311115193 1.1118845853323547 1.1550562746259423 1.4231166979329977 1.0 18.928497194073625 2.1274703160093984 1.7535106332825385 1.2089826019654248 0.9707354466116893 0.3358734234957671 0.13046246672333556 0.3810007658606832 2.2622706653282028 0.07246835533178708 0.04066361367571198 134.1128266270607 -2.1274703160093984 -0.23824715535373553 MEPGEELEEEGS(ph)PGGREDGFTAEHLAAEAMAADMDPWLVFDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEPGEELEEEGSPGGREDGFTAEHLAAEAMAADMDPWLVFDAR 43 1 Q9H3H3-1;Q9H3H3;Q9H3H3-3 Q9H3H3-1 C11orf68 UPF0696 protein C11orf68 1 MEPGEELEEEGS(0.984)PGGREDGFT(0.016)AEHLAAEAMAADMDPWLVFDAR;MEPGEELEEEGS(0.879)PGGREDGFT(0.121)AEHLAAEAMAADMDPWLVFDAR 122.77 4.2455e-09 31492000.0 14184.9 13060.2 13579.1 13134.0 14120.8 17230.199999999997 18941.1 15335.0 18364.0 16869.8 True False 14108.53007449054 13494.900861942384 15490.91924834693 14796.763053340639 15919.000179461125 16039.11682952804 18024.84663097137 16479.37556955217 13838.438264992832 15793.154921037576 0.8933319621715988 0.854477837355109 0.9808628691226193 0.9369098908559635 1.0079683419210885 1.015573956547645 1.1413075298185689 1.043450510803291 0.8762301347756093 1.0 13.947011779644416 3.784813105984345 1.0485597680402945 1.0285233797070628 0.8690512420802929 0.35958600843441213 0.06605785335721552 0.6286362533711191 1.2589435938886777 0.023833149094074302 0.07858661494916735 6092.746459457031 -3.784813105984345 -0.15947213762676982 MEQELKEPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 MEQELKEPGR 10 1 C9JVE2;Q96GG9 C9JVE2 DCUN1D1 DCN1-like protein;DCN1-like protein 1 0 ;;; 135.08 0.00014005 1311130000.0 1947120.0 1899500.0 1703510.0 1670810.0 1579690.0 2116470.0 2175690.0 1852690.0 2694120.0 2164440.0 False True 1936636.9222653701 1962723.7092280004 1943349.4008256432 1882334.374687991 1780854.1579438068 1970163.4105344801 2070443.5627570795 1990947.1355691948 2030190.2253584443 2026303.586129689 0.9557486526312746 0.9686227289252701 0.9590613243386243 0.9289498313938811 0.8788683838561925 0.9722942919414961 1.0217834962784127 0.9825512569772301 1.0019180932488891 1.0 20.950418908020147 2.481160650139738 24.440768991713256 0.9987566494767776 0.9390774654365834 0.5941512949340385 0.024662317889302506 99.63203958444002 602842.5788339878 0.009032307374478368 0.007725636381353927 302.8033322632612 -2.481160650139738 -0.05967918404019412 MEREDS(ph)S(ph)EEEEEEIDDEEIER ddPTM_BT-474_Trastuzumab_2h_R1 4 MEREDSSEEEEEEIDDEEIER 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER 237.28 4.2368e-30 3047670000.0 887950.0 950160.0 787180.0 838900.0 837550.0 942720.0 849270.0 808320.0 964870.0 993380.0 True False 883169.3758605191 981785.5012161509 898008.1017087825 945104.6539856442 944207.027952216 877551.9853241787 808187.5655735428 868640.9429657907 727090.7170956009 929981.6379245942 0.9496632404823129 1.0557041786407368 0.9656191747106255 1.0162616286648407 1.0152964203243497 0.9436229163433583 0.8690360461063997 0.9340409611788731 0.7818334120211475 1.0 19.826842705564307 2.514146651503885 3.6743335486735607 0.8948451103878255 1.0020211050148777 0.41859464099561716 0.05787245412757202 0.20860004482196284 5.892986129718875 0.01870636195923461 0.016675423963437585 326.69813217869176 -2.514146651503885 0.10717599462705218 MES(ph)EGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_BT-474_Trastuzumab_2h_R1 5 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK 273.06 1.2740999999999992e-76 4886360000.0 2189531.0 1126173.0 970022.0 830311.0 1168382.0 1720634.0 1455732.0 1575235.0 2548384.0 1597400.0 True False 2177742.808375764 1163656.9875190442 1106592.6660176285 935428.2874662955 1317168.5221573242 1601690.6215167644 1385312.6817237223 1692787.034581252 1920368.909796094 1495452.5643970543 1.4562433207326773 0.7781303233701796 0.7399717599627049 0.6255151849924757 0.8807825493872408 1.0710407402073256 0.9263501328658065 1.1319563554754144 1.2841389660329081 1.0 20.512150718367533 2.0602093975953264 1.3724914398390429 1.1514620029162292 0.8785100111312186 0.14676271487037185 0.22378696169431161 0.730909970262927 2.5812175298495985 0.1532448552769439 0.0758707880583972 114.87073438830438 -2.0602093975953264 -0.2729519917850106 MES(ph)HS(ph)EDEDLAGAVGGLGWNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 MESHSEDEDLAGAVGGLGWNSR 22 0 Q96MH2;K7ESM2;K7ELS4;K7EJA3;K7ERG7;K7EIM4 Q96MH2 HEXIM2 Protein HEXIM2 2 MES(1)HS(1)EDEDLAGAVGGLGWNSR;MES(1)HS(1)EDEDLAGAVGGLGWNSR 180.26 2.8433999999999995e-17 133479000.0 91911.0 98075.0 71881.0 92331.0 93627.0 97456.0 95981.0 84637.0 110760.0 93592.0 True False 91416.1613882721 101339.36708741063 82001.21999914767 104020.09513308939 105549.84347929331 90719.09610674778 91338.0323469736 90953.04271797773 83464.68210796147 87618.8784318574 1.0433386391651647 1.1565928359403033 0.9358852962597703 1.187188160756788 1.2046472788553337 1.0353829874380491 1.042446947298106 1.038053035439313 0.9525878851881594 1.0 16.418954127066357 1.875326123256197 1.3571782228360132 0.9857957897385337 1.09964261936174 0.2652061742039804 0.07601761928744037 0.6021321507403864 2.066521314969017 0.05778084413721246 0.024698716770267234 75.04575362846943 -1.875326123256197 0.11384682962320625 MESEGGADDS(ph)AEEGDLLDDDDNEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MESEGGADDSAEEGDLLDDDDNEDR 25 0 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 MESEGGADDS(1)AEEGDLLDDDDNEDR 290.75 5.069199999999999e-63 414870000.0 241020.0 227110.0 195300.0 206860.0 242920.0 243800.0 209300.0 184090.0 211740.0 211350.0 True False 239722.37509983935 234669.2190591059 222796.54242196906 233048.4547901662 273854.42210035515 226946.67984346877 199175.35939635558 197827.73059007875 159559.514170637 197861.46205416147 1.2115667831981303 1.186027923895907 1.1260229258842835 1.1778365143504945 1.3840715582370042 1.1469978917943389 1.006640491425432 0.9998295197875698 0.8064203737004637 1.0 17.59413111705204 2.161029869586082 2.2314866839407435 0.9390632540018404 1.2121684734746248 0.7100972664157114 0.08062417089866517 0.17838681857829558 1.7699607675993907 0.04051645762971126 0.025489781887462308 144.88714995351458 -2.161029869586082 0.2731052194727843 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIK ddPTM_BT-474_Trastuzumab_2h_R1 4 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIK 34 1 P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIK;MES(0.014)EGGADDS(0.986)AEEGDLLDDDDNEDRGDDQLELIK 273.51 6.0907999999999985e-74 691175000.0 210297.0 148821.0 157643.0 143410.0 172038.0 198901.0 159220.0 177521.0 201935.0 192972.0 True False 209164.7843181933 153774.41702080594 179837.76414248062 161565.6912958415 193946.01955088487 185151.44203259164 151517.92032053377 190768.51845337285 152170.82504036842 180656.36174835902 1.157804697791625 0.8511984606166394 0.9954687584873504 0.8943260549046737 1.0735631874455513 1.0248819374016507 0.8387079140428337 1.055974539767934 0.842321983946135 1.0 17.462888534085142 4.760529309087529 24.135205577414542 0.9592813760362441 1.157805032273456 0.33639917108066986 0.08590660198989247 4106.733633466088 4511616.51123602 0.01901674658328905 0.8974159225056243 57614.16991314706 -4.760529309087529 0.19852365623721202 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_BT-474_Trastuzumab_2h_R1 18 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 MES(0.005)EGGADDS(0.995)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.027)EGGADDS(0.973)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.004)EGGADDS(0.996)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.021)EGGADDS(0.979)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.019)EGGADDS(0.981)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.002)EGGADDS(0.998)AEEGDLLDDDDNEDRGDDQLELIKDDEK 346.13 2.3991999999999986e-145 123555559000.0 9556979.0 5524902.0 4641951.0 4080847.0 5415086.0 7919427.0 6390843.0 7041124.0 11221422.0 7204523.0 True False 9505525.286944194 5708795.0231962195 5295497.352238613 4597481.811781331 6104665.104370675 7371975.651815934 6081693.508698913 7566568.426983207 8456052.907451116 6744724.174037537 1.4093275042341697 0.8464089673482988 0.7851317882831397 0.6816411899360415 0.9051022616861575 1.0929988331017118 0.9016964002930131 1.1218499425238464 1.253728497897808 1.0 22.685328014590404 1.6736781789973894 4.918284030378447 1.1456802554360432 0.9299435084910705 0.14498310535949543 0.19510408924782094 0.26616176273490827 14.672963397886434 0.1067139716714104 0.051535687685030064 47.1713362569433 -1.6736781789973894 -0.2157367469449727 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQVK ddPTM_BT-474_Trastuzumab_2h_R1 3 MESEGGADDSAEEGDLLDDDDNEDRGDDQVK 31 1 B4DY08 B4DY08 HNRNPC 1 MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK 393.15 1.1009999999999992e-155 3051600000.0 1631210.0 1161350.0 1079470.0 1045640.0 1519720.0 1728310.0 1380580.0 1441120.0 2052050.0 1602040.0 True False 1622427.7466044687 1200004.8326990986 1231449.9930785599 1178017.9167881145 1713247.333913849 1608835.9977041264 1313796.071072243 1548663.6922590835 1546349.7735612355 1499796.4356245522 1.0817653036552588 0.8001118046392657 0.821078090218126 0.7854518712051471 1.1423199130356718 1.0727029078677384 0.8759829266597409 1.0325825928597983 1.0310397710188566 1.0 20.5163352692157 3.2488094853937097 24.99914701968488 1.0196371949896401 0.8633150850553375 0.36245291667108526 0.09937235873130786 229.6125690308167 560070.1169100859 0.027764876099045852 0.03717608100016417 1773.4113570660754 -3.2488094853937097 -0.15632210993430262 MESGIEPSVDLETLDER ddPTM_BT-474_Trastuzumab_2h_R1 1 MESGIEPSVDLETLDER 17 0 Q9NWU2 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog 0 123.64 0.00012309999999999998 28017000.0 12704.0 18448.0 16304.0 20441.0 17883.0 16287.0 16851.0 14724.0 17969.0 18422.0 False True 12635.603075547086 19062.030527948496 18599.461483091553 23028.82850413704 20160.294049154658 15161.11802547406 16035.852752928738 15822.779646957044 13540.780722264008 17246.292188132305 0.7326562102572995 1.1052828236938752 1.0784614617564234 1.3352915660320235 1.1689639621800891 0.8790943502573199 0.9298145118962726 0.9174597921891394 0.7851415582290684 1.0 14.073998607134488 2.7297068920961656 24.223304519621596 0.9012723142534029 1.0989446631279887 0.27026943959288796 0.1483885446396515 559.2519344604196 1530078.3533596112 0.04891619875141633 0.04679472456334375 536.6694727286939 -2.7297068920961656 0.19767234887458573 MESMNRPYTSLVPPLS(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 MESMNRPYTSLVPPLSPQPK 20 1 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 MESMNRPYTSLVPPLS(1)PQPK;MESMNRPYTSLVPPLS(1)PQPK 101.41 0.00022818 2825500000.0 1290450.0 1230380.0 1081330.0 1169830.0 1074830.0 1383820.0 1265350.0 1173860.0 1637080.0 1263830.0 True False 1283502.360582472 1271332.4545195836 1233571.8649111488 1317930.3580546288 1211703.229483472 1288159.7805618905 1204140.1863935879 1261459.3939403011 1233643.5697481176 1183171.287380701 1.084798434742178 1.0745125985385036 1.0425978707123837 1.1138965018093507 1.024114802655442 1.088734821661885 1.0177226232892347 1.0661680243550484 1.0426584746483765 1.0 20.174227516684397 -4.999999921206607 0.10010973620733758 0.7929784984288909 1.1056030387834004 0.39046013476973274 0.026673301040465933 179.03282313370022 1.2199403589071156 7.652070515322919 0.4038968182936687 1.000000181428509e-05 4.999999921206607 0.3126245403545095 MESS(ph)T(ph)GPRMPLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 MESSTGPRMPLLK 13 1 E9PNY9;Q9NQ32-2;Q9NQ32 E9PNY9 C11orf16 Uncharacterized protein C11orf16 2 MES(0.001)S(1)T(1)GPRMPLLK;MESS(1)T(1)GPRMPLLK 66.692 0.064949 197880000.0 144112.0 168550.0 165039.0 167295.0 147352.0 166803.0 164961.0 165127.0 180389.0 177155.0 True False 143336.11700434855 174160.08485937343 188275.05665529618 188474.52984685707 166116.40377627025 155272.3012220267 156981.2062177841 177449.61523791583 135934.54803876005 165848.81622997386 0.8642577032662799 1.050113523981231 1.1352209858056812 1.1364237269291648 1.0016134426062189 0.9362279740768167 0.9465319668010563 1.0699480362395577 0.8196292932851974 1.0 17.339509189153997 3.0080091824883537 24.334169432206487 0.967476054665713 1.0550887321062117 0.17365820991370295 0.09182040621064323 253.59690249046417 770489.0613775223 0.0271052668871777 0.03233550550741924 1018.6129248288814 -3.0080091824883537 0.08761267744049872 MESSFGS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 5 MESSFGSPSK 10 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 MESSFGS(1)PSK;MESSFGS(0.989)PS(0.011)K;MESSFGS(0.986)PS(0.014)K;MESSFGS(0.989)PS(0.011)K;MESSFGS(1)PSK 255.41 4.0785e-17 1528690000.0 3475130.0 2814690.0 2489608.0 2179207.0 2147592.0 3257390.0 3223960.0 2827700.0 3908320.0 3099280.0 True False 3456420.2862032377 2908375.2551339627 2840123.1663393383 2455094.3827608707 2421075.111424938 3032214.2963712756 3068004.7380767995 3038717.332769656 2945166.904804879 2901481.2969728974 1.191260577763953 1.0023760133033626 0.9788528257281638 0.8461520621629579 0.8344272678754934 1.0450573296938952 1.0573925605785002 1.0472986112093627 1.0150563120560379 1.0 21.468358198594068 MESSFGS(ph)PSKQESSESLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 MESSFGSPSKQESSESLPK 19 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 MESSFGS(0.993)PS(0.007)KQESSESLPK;MESSFGS(0.975)PS(0.025)KQESSESLPK 227.66 7.3673e-20 4691100000.0 1585030.0 1074030.0 997830.0 954370.0 844320.0 1440350.0 1555230.0 1219230.0 2127570.0 1433240.0 True False 1576496.3745933878 1109778.4392851545 1138315.7907061607 1075193.1441462396 951839.1473232833 1340781.9947191968 1479997.5833444507 1310215.1337244927 1603258.881477391 1341769.3961415007 1.174938390402171 0.8271007242202141 0.8483691713192987 0.801324838111639 0.7093910101545526 0.9992641049757557 1.1030193322343242 0.9764830957482352 1.1948840732899786 1.0 20.35570531267264 2.4936905160132157 22.24579014260938 1.0573850913979863 0.8634410538692617 0.3545212550357135 0.12529758484856313 189.03695953733094 253800.95368706313 0.040772444420614375 0.03743308570699316 311.6667813887202 -2.4936905160132157 -0.19394403752872458 MESTAGITTTTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 MESTAGITTTTSPR 14 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 MESTAGITTTT(0.004)S(0.996)PR 155.28 6.1764e-06 350240000.0 370690.0 419240.0 396460.0 348160.0 383000.0 360980.0 331150.0 318770.0 332510.0 326690.0 True False 368694.24622753065 433194.14996406814 452278.12190790457 392237.0203023507 431772.7797811466 336026.3022555188 315131.00938415225 342558.23608126136 250567.3659057269 305840.36450661934 1.2055120547031357 1.4164060740082347 1.4788045477172973 1.282489382770342 1.411758648920266 1.098698344796951 1.03037743200614 1.120055675560926 0.8192750041674236 1.0 18.222419299155632 2.6179536753152375 3.5189437239952226 1.0190596128739662 1.3650899033882615 0.7475745007395606 0.10107879761070734 0.12836083855628413 2.9168456996135514 0.03414247431878473 0.031877717507479815 414.90978328765567 -2.6179536753152375 0.34603029051429535 METEADAPS(ph)PAPS(ph)LGER ddPTM_BT-474_Trastuzumab_2h_R1 1 METEADAPSPAPSLGER 17 0 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 METEADAPS(1)PAPS(1)LGER 133.93 2.767e-05 0.0 239000.0 178900.0 181150.0 193330.0 199530.0 194860.0 185240.0 191080.0 290040.0 199050.0 True False 237713.25055539646 184854.57835266634 206654.34541597357 217805.55817742852 224938.962793034 181389.78685110068 176279.23351448087 205339.3598845799 218563.52833688306 186346.4585847213 1.2756520964272662 0.9919940510628128 1.1089791938386606 1.1688204854100006 1.2071008190948092 0.973400773101534 0.9459757639254335 1.1019225234764716 1.172888017281608 1.0 17.507627876112597 2.7392421316138846 24.999895351055734 1.0420184005724475 1.1404129803329297 0.2695333424536672 0.09108985416397546 101.21303992685615 3712839.64054952 0.029360351537617107 0.029488545346536253 548.5827302625596 -2.7392421316138846 0.09839457976048216 METEADAPS(ph)PAPSLGER ddPTM_BT-474_Trastuzumab_2h_R1 9 METEADAPSPAPSLGER 17 0 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER 323.2 3.408399999999998e-58 13563550000.0 10501390.0 12758360.0 11288840.0 11986060.0 12217700.0 12294830.0 12320450.0 11646160.0 13010540.0 12194530.0 True False 10444851.683054103 13183014.300008517 12878210.547643732 13503493.967041573 13773551.675018547 11444917.341016727 11724462.76481045 12515255.597202208 9804266.749304073 11416264.655137602 0.9149097361152766 1.1547572431299438 1.1280581640903198 1.182829443338515 1.20648496606288 1.0025098126878331 1.0269964054778769 1.0962653700893341 0.8587981310412167 1.0 23.44458734949777 2.7108453091288607 24.448446802774566 1.0130481587584674 1.123709090654235 0.28777248515301146 0.09280149808516172 796.245457161047 702388.9398566904 0.03004432802477085 0.02833218835678166 513.8605875473722 -2.7108453091288607 0.11066093189576764 METVSNASSSSNPS(ph)SPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 METVSNASSSS(0.003)NPS(0.617)S(0.379)PGR 118.72 0.0003696 72457000.0 72806.0 83574.0 87712.0 90822.0 87217.0 88889.0 90849.0 88055.0 110440.0 96992.0 True False 72414.020585507 86355.71006845021 100061.087193629 102320.05588781052 98323.56797434008 82744.31265219898 86454.28679311747 94626.11123422987 83223.54182018123 90801.887520971 0.7974946618679346 0.9510343058508125 1.1019714449275029 1.126849437619668 1.082836168484184 0.9112620333260022 0.9521199300306458 1.0421161257509726 0.9165397778868911 1.0 16.47043466703085 4.6476565281441715 3.4048202444386666 1.01881636576013 0.7880817224138396 0.4620769678123756 0.0712132310991173 0.23941871768214043 4.516660213005588 0.018550636919445123 0.12170884083653037 44427.97595442756 -4.6476565281441715 -0.23073464334629035 METVSNASSSSNPSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 12 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 METVSNASSSSNPS(0.003)S(0.997)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPS(0.037)S(0.963)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPS(0.019)S(0.981)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR;METVSNASSSSNPSS(1)PGR 449.23 7.173899999999991e-191 24814968000.0 8159873.0 10067935.0 9855155.0 10043281.0 9468525.0 10764616.0 10668829.0 9495137.0 11048055.0 10735268.0 True False 8115941.1504151095 10403040.130279768 11242675.161457138 11314759.344839208 10674285.53440541 10020483.433100425 10152736.982385378 10203712.338268736 8325409.881602333 10050134.00531466 0.8075455656733811 1.035114569097137 1.1186592293706576 1.1258316892944706 1.0621038016767428 0.9970497336454862 1.0102091153228863 1.0152812224068717 0.8283879475835579 1.0 23.2607114021843 1.3801486347390923 8.227250795377378 0.9143123451907041 1.0289654092180451 0.1780637455445765 0.0914907027796598 0.3942394504467651 29.15060515948447 0.06155018948243488 0.022543797905770203 23.996540460206894 -1.3801486347390923 0.11465306402734099 MEVDEAEKKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MEVDEAEKKEEK 12 2 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 55.31399999999999 0.072142 104470000.0 240990.0 157960.0 143000.0 115500.0 115940.0 261220.0 194410.0 135400.0 341740.0 201490.0 False True 239692.53661650585 163217.60311116342 163133.15702171804 130122.28815751824 130704.27176978087 243162.47624573793 185005.645581679 145504.23554726868 257522.75608138985 188630.73569573197 1.270697141335113 0.8652757595900976 0.8648280802173065 0.6898254819268164 0.6929107883065858 1.2890925508447764 0.980782081453044 0.7713707684519248 1.3652216068158858 1.0 17.52520524389112 2.7570816600113393 24.993274878240605 1.034388983285953 0.8650300810947343 0.16440753425000598 0.21735837714460307 1855.4038136695049 2503776.967497766 0.06849517701000879 0.07252283504389535 571.5861014026974 -2.7570816600113393 -0.16935890219121863 MEVDRS(ph)PGLPMSDLK ddPTM_BT-474_Trastuzumab_2h_R1 5 MEVDRSPGLPMSDLK 15 1 A0A494BZV2;Q6WCQ1-2;J3KSW8;H0Y2S9;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK 192.46 8.064299999999999e-08 1600680000.0 2076280.0 2172750.0 1993900.0 1927250.0 1928960.0 2334390.0 2113520.0 1774878.0 2761490.0 1971930.0 True False 2065101.5391763954 2245068.6702948892 2274623.7887105173 2171239.6523946063 2174601.6221583295 2173019.113862981 2011280.9631695417 1907328.4090078669 2080957.7915701948 1846079.7391457898 1.1186415707763255 1.2161276800176128 1.232137345141452 1.1761353566446016 1.1779564967028737 1.1770992702993812 1.0894875884939796 1.0331776946376205 1.127230718935839 1.0 20.816033439093165 2.182013984859106 3.1580985588817834 1.0574273296747352 1.187603260500367 0.6828032942537329 0.040737395699923906 0.13806100829219656 2.804020061709175 0.01634323095460974 0.011567246444518632 152.0596494170755 -2.182013984859106 0.13017593082563184 MEVEDGLGS(ph)PKPEEIKDFSYVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 MEVEDGLGSPKPEEIKDFSYVHK 23 2 F8VRB8;H0YHC1;A0A3B3IS46;A0A3B3IRX3;Q71F56 F8VRB8 MED13L Mediator of RNA polymerase II transcription subunit 13-like 1 MEVEDGLGS(1)PKPEEIKDFSYVHK;MEVEDGLGS(1)PKPEEIKDFSYVHK 173.03 2.053e-12 554720000.0 667890.0 412300.0 402640.0 356350.0 370340.0 613180.0 559060.0 579630.0 1097400.0 591580.0 True False 664294.1544495547 426023.15625938727 459328.2121903811 401463.873462611 417500.6038228455 570792.3098704597 532016.1319834035 622884.9339015015 826960.4744066175 553824.8579228802 1.199466121728428 0.7692380545307895 0.8293744955997303 0.7248931999338221 0.7538495209273943 1.0306368551444511 0.9606216195833637 1.12469659855578 1.4931804930319166 1.0 19.079070283644054 1.8353616040570893 1.6577842971724843 1.2486144646848585 0.859063035764504 0.406986492225449 0.1753316980926946 0.32656102526392233 1.705616561684923 0.12067346365789468 0.05177454345629221 68.44813257401356 -1.8353616040570893 -0.38955142892035444 MEVGPFSTGQES(ph)PTAENAR ddPTM_BT-474_Trastuzumab_2h_R1 5 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 MEVGPFSTGQES(0.937)PT(0.063)AENAR;MEVGPFSTGQES(1)PTAENAR;MEVGPFSTGQES(0.995)PT(0.005)AENAR;MEVGPFSTGQES(0.999)PT(0.001)AENAR;MEVGPFSTGQES(0.999)PT(0.001)AENAR 382.26 1.596599999999999e-109 2591820000.0 712909.0 832565.0 714430.0 714646.0 826354.0 746735.0 751396.0 721269.0 779895.0 774444.0 True False 709070.7771556368 860276.4227288298 815015.5340631194 805120.110325695 931585.2837161077 695114.9670751129 715048.1048685327 775093.7553097701 587700.3273075903 725018.3208851342 0.978003943803754 1.1865581847346514 1.1241309503297967 1.1104824349028437 1.2849127489341063 0.9587550370127006 0.9862483254155159 1.0690678193669667 0.8106006570842237 1.0 19.467657926276342 2.7000957464366495 24.998914708952732 0.9792253857586067 1.1374131816196522 0.4531703876064198 0.09374980735016193 534.9398406253488 347665.14548917965 0.029440712753708707 0.02775747114007988 501.2977397096686 -2.7000957464366495 0.15818779586104548 MEVQEQEEDISSLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEVQEQEEDISSLIR 15 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 184.71 1.0541e-06 123881000.0 115442.0 143098.0 145034.0 118782.0 129810.0 148350.0 122205.0 124741.0 139342.0 159758.0 False True 114820.47309881209 147860.93042543228 165453.5265418732 133819.78902100708 146340.53405585 138094.91367833733 116293.47728156522 134049.8068419635 105003.03118713954 149562.10766429492 0.7677109857032542 0.9886256133627036 1.1062529749396681 0.8947439368892631 0.978459961157568 0.923328213509155 0.77755976495461 0.8962818787152282 0.7020697476584639 1.0 17.190385181685627 2.4140717349297782 6.742772015401291 0.8402001371724716 0.9550029123143994 0.17094103180668896 0.10722667771666333 0.3340071643101188 28.32620017702513 0.036005339689199146 0.030091527626045875 259.46078931087897 -2.4140717349297782 0.11480277514192783 MEWWSR ddPTM_BT-474_Trastuzumab_2h_R1 2 MEWWSR 6 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 ; 110.34 0.066976 1248630000.0 1689060.0 1817820.0 1767060.0 1720080.0 1554520.0 2039270.0 1854010.0 1127250.0 2434390.0 1717910.0 False True 1679966.2886322092 1878325.039804607 2015846.6884391415 1937841.951636222 1752478.907638085 1898300.0648252296 1764324.4532940139 1211371.1190595177 1834467.2036547554 1608271.5130232533 1.0445787760514287 1.1679153828159916 1.2534243578372672 1.2049221390444436 1.0896660753156961 1.1803355648927563 1.0970314645301462 0.7532130671035538 1.1406452136967196 1.0 20.617079556329497 1.9799397650287234 20.917736145169464 0.9341792704021095 1.1589927055937363 0.39434628074352995 0.10448350660025287 74.7076342932632 77900.11108897148 0.04112718145757631 0.027048641244152533 95.48601414143906 -1.9799397650287234 0.2248134351916269 MFADYLAHESR ddPTM_BT-474_Trastuzumab_2h_R1 4 MFADYLAHESR 11 0 O14579;M0QXB4;O14579-3;O14579-2;M0R061 O14579 COPE Coatomer subunit epsilon 0 ;;; 237.68 1.3741e-15 2032130000.0 1182350.0 2168060.0 2378270.0 2350940.0 2075260.0 2119920.0 2228120.0 1920590.0 2231120.0 2144660.0 False True 1175984.3589714344 2240222.5664800527 2713109.7437065807 2648568.762952688 2339532.0599702895 1973374.9201549098 2120337.3233550275 2063914.178358412 1681290.3714762998 2007785.9626641967 0.5857120135509775 1.1157676207215974 1.3512943083367646 1.3191489592039063 1.1652298120791162 0.9828611997746882 1.0560574497400523 1.0279552784698909 0.8373852605510503 1.0 20.937174050235644 2.7326991210799605 23.67890895674752 0.9925973187666464 1.133203835829823 0.08031657545301918 0.20315850418407425 598.9416597450611 2419558.937681077 0.06772314532269899 0.06548737556540851 540.3798184636811 -2.7326991210799605 0.14060651706317673 MFDYTDDPEGPVMPGSHSVER ddPTM_BT-474_Trastuzumab_2h_R1 2 MFDYTDDPEGPVMPGSHSVER 21 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 ; 173.09 4.751e-12 1007480000.0 1720110.0 1856790.0 1898380.0 1963830.0 1916590.0 2105510.0 2026870.0 1755110.0 2289970.0 2012170.0 False True 1710849.118882189 1918592.1326967448 2165655.4029852375 2212450.6766439765 2160656.3759810645 1959961.0495374165 1928822.5547046864 1886085.2204679966 1725637.5775258983 1883751.587894593 0.9082137633626888 1.0184952968459562 1.1496502070136112 1.174491738115406 1.1469964457447168 1.0404562162721256 1.0239261732277916 1.0012388218215182 0.9160642988254023 1.0 20.845177297256996 1.9525248383316625 1.6221423741795733 0.9649316511390152 1.0832722999206261 0.26795899664808753 0.07559726796085121 0.5324033214101137 2.6082359786318516 0.05470675653882431 0.025673162480245024 89.64474544403434 -1.9525248383316625 0.11834064878161088 MFEELGQR ddPTM_BT-474_Trastuzumab_2h_R1 4 MFEELGQR 8 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ;;; 173.68 0.00064297 706140000.0 880310.0 1093620.0 1007690.0 997000.0 942670.0 1018740.0 1046030.0 925570.0 1240100.0 1056820.0 False True 875570.5087716359 1130020.4805927484 1149563.9930015055 1123220.0977752868 1062713.4368571618 948316.9016560119 995429.5326773499 994640.7333492272 934493.9714886516 989372.8428108767 0.8849752801826252 1.1421583772021497 1.1619118124725505 1.1352849493868669 1.0741283678637463 0.9585030643875144 1.0061217466301842 1.0053244745665184 0.9445316578871212 1.0 19.91615477409528 2.8370949958544305 5.303021714199254 0.9872324404275815 1.0924616030655396 0.28958501560168226 0.07468891088134759 0.2825046670604472 12.144425401535264 0.02304234905810026 0.024487655729482367 687.2187430805966 -2.8370949958544305 0.10522916263795812 MFEIDYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 MFEIDYSR 8 0 P16278-3;P16278;E7EQ29;P16278-2;F8WF40;C9JF15;C9JWX1 P16278-3 GLB1 Beta-galactosidase 0 89.698 0.032435000000000005 0.0 171550.0 195680.0 194210.0 179500.0 181770.0 204070.0 171050.0 161560.0 220660.0 186610.0 False True 170626.39386099673 202193.09050894206 221553.07989641852 202224.6815954506 204917.3320648012 189963.12122910874 162775.6580255451 173616.42758505687 166281.2996925134 174700.39003514103 0.9766800968599737 1.157370572946465 1.26818881086558 1.157551403032203 1.1729643650113317 1.0873651809872755 0.9317418123268227 0.9937953060673412 0.9518084055740567 1.0 17.414523303648185 2.41717708833575 4.011407557202041 0.970767071092928 1.1532378705235422 0.5895812007566221 0.0695855205179214 0.1531668882546866 5.050642485868992 0.025554872583149008 0.021368599044998857 261.3226709016333 -2.41717708833575 0.18247079943061417 MFFDALYDEDVVKEDAFYSWESSKDPAEQQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 MFFDALYDEDVVKEDAFYSWESSKDPAEQQGK 32 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 307.08 5.132499999999998e-91 576490000.0 603130.0 403510.0 406580.0 394860.0 375340.0 528390.0 572510.0 535170.0 982710.0 551810.0 False True 599882.8150940425 416940.5864230539 463822.9299432872 444849.2355140925 423137.3241855228 491863.64299626916 544815.5040994138 575107.1029381963 740534.288139354 516593.01337169064 1.161229051819221 0.8070968356729663 0.8978497926559545 0.8611212772907205 0.8190922316656921 0.9521298783852723 1.054631963648755 1.1132692236478323 1.43349652235141 1.0 18.978668606390258 1.9178902342924387 1.7811096545722547 1.2123751458972765 0.9018897762729375 0.43547748990379875 0.13663016469416703 0.2952082104690159 1.744001628329065 0.08409457473941133 0.03932106917843798 82.77329320101379 -1.9178902342924387 -0.3104853696243389 MFGIDR ddPTM_BT-474_Trastuzumab_2h_R1 6 MFGIDR 6 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ;;;;; 132.8 0.034289 3106920000.0 2386400.0 3059410.0 3658570.0 2661150.0 1311584.0 2018360.0 2877130.0 1889280.0 4182290.0 2327790.0 False True 2373551.8875539643 3161240.6123976023 4173664.8551394907 2998051.3171461467 1478606.4480325696 1878835.5239083827 2737952.230196061 2030267.6671694526 3151620.669314794 2179228.449278717 1.089170751391193 1.4506237808357874 1.9152029960516046 1.3757398028363867 0.6784999748520905 0.8621562941371481 1.2563860531016247 0.9316451737042221 1.446209400560056 1.0 21.05538601193025 3.45886871633042 22.890641913737177 1.0272820859717608 1.5088799154458754 0.37982061201383344 0.2704520193172344 86.70915537753602 108741.52577882806 0.07528441800984198 0.1019658247386271 2876.5287321860774 -3.45886871633042 0.48159782947411456 MFGIDRDAIAQAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MFGIDRDAIAQAVR 14 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 271.56 5.330899999999999e-33 3200800000.0 2408200.0 1759740.0 2404930.0 3671300.0 3461200.0 4179000.0 3247100.0 3520800.0 1699740.0 3717900.0 False True 2395234.518776176 1818311.8821147052 2743523.2399737085 4136086.2035731296 3901963.303860317 3890115.5663078562 3090025.367873412 3783539.9742601477 1280861.8523491016 3480620.4389456674 0.6881630906878571 0.5224102754121329 0.7882282162328401 1.1883186564364405 1.1210539535423405 1.1176500381311991 0.8877800444134114 1.0870303271006014 0.3679981413707649 1.0 21.73091306631968 3.9951865429552096 6.076840629220355 0.9853627815480647 0.6139451626749982 0.2986606089799688 0.2219045484846208 0.16334082849668313 25.702956086766616 0.05525893970805212 0.11201849201738366 9889.778000893402 -3.9951865429552096 -0.37141761887306646 MFIGGLSWDTSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 MFIGGLSWDTSKK 13 1 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 119.01 0.0006126 689750000.0 745110.0 754440.0 675710.0 735100.0 611080.0 793780.0 779860.0 794200.0 1257900.0 943970.0 False True 741098.4105495026 779551.0793313883 770844.0946233931 828163.5846284985 688897.4158450725 738907.8569571313 742135.1924454921 853467.236865885 947907.3999964308 883725.0264266242 0.8386074722203605 0.8821195009985547 0.8722669060763512 0.9371281335974037 0.7795381993770794 0.8361286993816769 0.8397806673489198 0.9657610810422698 1.0726270860850582 1.0 19.753238015182564 1.5659776935784455 3.490137284949977 1.0339199006707758 0.856492768330754 0.7594471737004331 0.0417672447543781 0.09248582835540328 2.5687624719383293 0.02732065956274524 0.011145784865135873 36.81100661280836 -1.5659776935784455 -0.17742713234002172 MFLQYYLNEQGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MFLQYYLNEQGDR 13 0 Q9NPE3;H0YM60 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 0 176.78 3.724e-05 285930000.0 139510.0 168480.0 174000.0 169330.0 160660.0 172060.0 162610.0 132620.0 186490.0 173330.0 False True 138758.893661018 174087.75495168945 198497.6875648878 190767.160638204 181119.0986935743 160165.89718567382 154743.93306947616 142516.77783071465 140532.0383379718 162267.93100472103 0.8551220983829574 1.0728414041750771 1.223271205443007 1.1756306958314136 1.1161730945364974 0.9870459073087827 0.9536322556856538 0.8782806124924848 0.8660493633451404 1.0 17.30801838281373 2.455961536737881 2.28162367823035 0.9084180992885338 1.0995704074204145 0.38312959880716846 0.09744301267863888 0.30029764185007873 3.1771080680030184 0.04069782442966173 0.03336024641727415 285.7337472263901 -2.455961536737881 0.19115230813188067 MFLYADNEDR ddPTM_BT-474_Trastuzumab_2h_R1 6 MFLYADNEDR 10 0 A0A087WY55;Q9NP79;Q5TGM0;Q9NP79-2 A0A087WY55 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog 0 ;;;;; 183.43 3.8831e-06 1520920000.0 1419290.0 1598200.0 1521460.0 1464910.0 1339670.0 1536250.0 1584880.0 1332260.0 1729660.0 1551760.0 False True 1411648.7003379434 1651395.1208676994 1735668.3432326107 1650367.4557993948 1510269.033653807 1430052.6534435165 1508213.2995704515 1431680.0062792024 1303408.4692565617 1452725.348271423 0.971724422663681 1.1367565953417627 1.1947670255068223 1.1360491904152035 1.039610849670142 0.9843929928978767 1.038195761755691 0.9855131997130344 0.8972160297247299 1.0 20.470330542672905 3.0293762316200747 3.2673546961368447 0.9860638514551009 1.1174353271415842 0.4820382537218013 0.062422302639061206 0.2156941572802032 4.78996886630041 0.019801135958231145 0.02326516240301899 1069.9814084224324 -3.0293762316200747 0.13137147568648333 MFPGLAAPS(ph)LPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MFPGLAAPSLPK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 MFPGLAAPS(1)LPK 69.01 0.08545499999999999 2217600000.0 720180.0 1322700.0 1687500.0 1309200.0 1727800.0 1710700.0 2571900.0 718750.0 1896800.0 1267800.0 True False 716302.6308995195 1366725.2699109644 1925085.3319870597 1474944.5857646996 1947825.088527063 1592443.3355546424 2447487.3713878947 772386.774738547 1429359.0558178166 1186887.918581811 0.6035132885634352 1.1515200791192124 1.6219605085266233 1.242699131630796 1.6411196525232818 1.341696474134998 2.0621048820787973 0.6507663972698086 1.204291520235314 1.0 20.178752272677343 1.660739572573411 16.51420949613743 0.9467095618862119 1.383932453008239 0.21321721763488455 0.3774298760787802 0.22884171087021898 64.01746484846204 0.17388710992096437 0.09607145749238019 45.786724139579505 -1.660739572573411 0.43722289112202717 MFS(ph)PMEEK ddPTM_BT-474_Trastuzumab_2h_R1 7 MFSPMEEK 8 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK 174.98 0.00028194 2130382000.0 4607680.0 3868820.0 3459050.0 3271510.0 3429600.0 4407830.0 4397530.0 4209860.0 6265450.0 4196590.0 True False 4582872.76284137 3997591.3349489244 3946054.1733984156 3685682.8305645185 3866339.231168191 4103127.0870157406 4184804.673704038 4524021.13043592 4721413.800228672 3928760.0333185415 1.1664934289637214 1.0175198538588885 1.0044019334174672 0.9381287732789573 0.9841118313103931 1.0443822102186056 1.0651718705683384 1.151513732594804 1.201756727361277 1.0 21.90564262072629 2.0306984860272217 2.6013131847779407 1.1322069032035214 1.0178991797811052 0.22914624488157853 0.07299318568823464 0.34078152030029746 4.4264587838249305 0.036552280347593266 0.02121821733394804 107.32440415270493 -2.0306984860272217 -0.11430772342241613 MFVGGLSWDTSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 MFVGGLSWDTSKK 13 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 120.84 0.00040667 1851800000.0 284230.0 320390.0 323070.0 262420.0 261480.0 308960.0 342430.0 302220.0 440750.0 314910.0 False True 282699.7372609214 331053.9874701553 368555.4478252196 295642.3450934711 294777.92808661674 287602.32241361006 325865.35269036755 324773.19104206463 332133.0682474178 294812.17419198476 0.9589147328658971 1.1229318747690844 1.250136460054097 1.0028159315461163 0.9998838375468656 0.9755442535636959 1.1053320765449823 1.1016274749582389 1.1265921061697042 1.0 18.169436575816047 -0.9399617732511198 3.8730599430178363 0.9999943276950986 1.0748532051172646 0.05930241334661357 0.08454128414639249 4562905.575529074 2356605.201374594 205.0414138254561 0.020298684888531503 0.1148254686819296 0.9399617732511198 0.07485887742216601 MFVLDEADEMLSR ddPTM_BT-474_Trastuzumab_2h_R1 10 MFVLDEADEMLSR 13 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;Q14240;Q14240-2;E7EQG2;J3KTN0 P60842;Q14240;J3KTN0 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ;;;;;;;;; 302.2 1.1914e-40 3009540000.0 1524744.0 1970762.0 1763728.0 1927256.0 1892481.0 1781913.0 1784178.0 1699341.0 1977479.0 1843094.0 False True 1516534.9477189842 2036357.6218192114 2012045.5718014035 2171246.4119939893 2133477.2377362996 1658733.5484820153 1697870.4939181572 1826154.4544987506 1490155.7973110285 1725466.1629678383 0.8789131773586982 1.1801782414073152 1.1660881070774767 1.2583535154693497 1.236464257326654 0.9613248779268777 0.984006832679804 1.0583542544570832 0.8636250477076461 1.0 20.718554751589547 2.72565169665311 24.776474259395133 0.9846571538708454 1.1535895426458334 0.3837481724019498 0.10724469742011906 755.8815151261418 1450783.31913822 0.03503517483923745 0.03322207141425654 531.6816805373822 -2.72565169665311 0.16893238877498795 MFVSSSGLPPS(ph)PVPSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 MFVSSSGLPPSPVPSPR 17 0 G1UD79;Q7Z309-4;Q7Z309;Q7Z309-2;Q7Z309-3;Q7Z309-5 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 MFVSSSGLPPS(1)PVPSPR;MFVSSSGLPPS(1)PVPSPR 151.41 2.6327e-07 140333000.0 276350.0 315030.0 281490.0 313210.0 274080.0 308080.0 305520.0 303290.0 355420.0 334660.0 True False 274862.16230537154 325515.58311034314 321121.3452450591 352862.35388585506 308982.4634005654 286783.15474231297 290740.83040026005 325923.03987541416 267831.5033839984 313301.71228315943 0.8773082033364485 1.0389843730446802 1.0249587942080327 1.1262701097750178 0.9862137718587048 0.9153577637747501 0.9279899183490289 1.0402848982224766 0.8548676655234319 1.0 18.25719312890694 3.0034488718802708 24.999457085765602 0.9554884632593736 1.023686964133003 0.15926788293968297 0.0733815861706058 195.29102112182295 1415561.412072393 0.021216126841335937 0.02524488252898896 1007.9729369039264 -3.0034488718802708 0.06819850087362944 MFYEEHLHLDDEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MFYEEHLHLDDEIR 14 0 Q9BV57;Q9BV57-2;A0A0G2JQN5 Q9BV57 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 0 ; 216.34 3.5648e-12 94244000.0 66023.0 78946.0 68824.0 68760.0 58835.0 75820.0 74020.0 6338.6 72264.0 36598.0 False True 65667.53950384483 81573.66988613532 78513.8209710681 77465.00894987836 66327.28850763365 70578.74186108212 70439.36981614052 6811.618518758618 54455.505487989605 34262.284306875794 1.916612999754561 2.3808590564338123 2.2915524332191666 2.2609411636436803 1.935868837978296 2.05995435765263 2.0558865598463516 0.19880806713729984 1.5893717126461826 1.0 15.064333720356643 1.7623065261919133 24.99999999683314 0.8690682210023435 2.1397776873408936 0.7173277155340249 0.3443625963229979 5.974612063788542 6294.752097314131 0.14806750750032305 0.08211462111401562 57.85042131475001 -1.7623065261919133 1.27070946633855 MGAGLGHGMDR ddPTM_BT-474_Trastuzumab_2h_R1 28 MGAGLGHGMDR 11 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;; 178.46 7.5328e-06 28452525000.0 12833757.0 15846886.0 14675650.0 15136484.0 14635650.0 14941053.0 15181036.0 12989966.0 16460494.0 14657232.0 False True 12764661.478276456 16374340.020865122 16741853.956963476 17052761.322421316 16499413.275206102 13908213.173565645 14446671.291490732 13959343.224630794 12404025.813019197 13721794.905072363 0.9302472137634052 1.1933089026722172 1.220092128820168 1.2427500513156362 1.2024238366299274 1.013585560036637 1.0528266448692083 1.017311752668058 0.9039652537317809 1.0 23.709965872491733 2.7276878202272976 21.734436723923928 1.0047547546889615 1.167923188853273 0.4440810380837418 0.08909150259347945 118.57186791444241 237020.45720063895 0.02917324855037348 0.027837121628559648 534.1802416540927 -2.7276878202272976 0.1631684341643116 MGANNLER ddPTM_BT-474_Trastuzumab_2h_R1 2 MGANNLER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 129.77 0.0025041 617770000.0 186721.0 230218.0 208249.0 230349.0 205370.0 208381.0 240850.0 197324.0 246052.0 223987.0 False True 185715.71488265347 237880.66696028045 237568.6490672432 259511.15978178475 231522.65217664203 193976.11194611114 229199.1653636512 212049.31887096906 185415.78152788142 209691.95789508146 0.8856596921832147 1.1344291376176816 1.1329411554548494 1.23758279710293 1.1041084002491095 0.9250527006055536 1.093027923742932 1.011242019005169 0.8842293399761829 1.0 17.677912006699323 2.821351275095133 8.721250780371234 0.9949950180608597 1.1108773999180808 0.2540631156642075 0.09742109410866827 0.539692478179087 52.98651179291653 0.030078433658141654 0.031919022177418745 662.7523481039887 -2.821351275095133 0.1158823818572211 MGANS(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 1 MGANSLER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGANS(1)LER 87.789 0.015813 260460000.0 143220.0 140960.0 134000.0 173050.0 153240.0 169400.0 165230.0 126200.0 206870.0 185610.0 True False 142448.91943323784 145651.7683878806 152866.0352511204 194958.11225678382 172754.20567535996 157689.77672470707 157237.19366010427 135617.68483061533 155889.66041598047 173764.21089128414 0.8197828465515332 0.8382150020466981 0.8797325667180181 1.1219693126495403 0.994187495740673 0.9074928370800471 0.9048882554905393 0.7804696038096404 0.8971333027461742 1.0 17.406771444468678 -0.1403599334655541 7.6418861986137605 0.9999999994259411 0.9022699260605578 0.08871539757339464 0.09111947216480608 13231999.556367764 1731509.5030091498 0.09744904785249887 0.023634865481986393 0.723835812628848 0.1403599334655541 -0.09773007336538331 MGANSLER ddPTM_BT-474_Trastuzumab_2h_R1 3 MGANSLER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 141.23 0.0014815999999999998 1757370000.0 1386130.0 1312830.0 1261840.0 1228250.0 1086380.0 1228990.0 1275180.0 1106510.0 1597260.0 1161170.0 False True 1378667.2300935208 1356526.7529275056 1439496.1038901035 1383746.324064691 1224724.053521257 1144032.8140312736 1213494.6717393426 1189083.3949439295 1203636.6751874557 1087063.1364723484 1.2682494547349505 1.2478822134743703 1.324206530047043 1.2729217629024894 1.12663562255973 1.0524069629881836 1.1163056045459143 1.0938494325202208 1.1072371372038268 1.0 20.052004303645564 3.1812145878894613 3.7258732557959107 1.0848244776978588 1.2812082497379118 0.8771203646764159 0.036176435001128444 0.07152284573165217 2.0126961081743207 0.010230669628580545 0.012843664327823212 1517.8001376943025 -3.1812145878894613 0.19638377204005297 MGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_BT-474_Trastuzumab_2h_R1 2 MGAPESGLAEYLFDKHTLGDSDNES 25 1 G3V192;P02794;G3V1D1 G3V192 FTH1 Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed 1 MGAPESGLAEYLFDKHTLGDS(0.5)DNES(0.5);MGAPESGLAEYLFDKHTLGDS(1)DNES 210.28 1.1435999999999998e-25 1009120000.0 390730.0 363000.0 581510.0 479630.0 521440.0 599300.0 529990.0 715950.0 511630.0 580090.0 True False 388626.3530941842 375082.2355618666 663381.5534244713 540351.1088224282 587842.2931829793 557871.8016004547 504352.35894158785 769377.8245204355 385545.64199075836 543068.1595599648 0.7156124811461583 0.690672485504926 1.2215438186654022 0.9949968513349444 1.0824466189645403 1.027259270829807 0.9287091317418656 1.4167242379738192 0.7099396921063404 1.0 19.050773754028253 4.252006193032789 24.987170673737644 1.07281452517333 0.703142204431075 0.37614962066194524 0.17512152498098268 210.63743407732485 391440.02082497417 0.041059434353645986 0.11109451117092702 17865.130503196735 -4.252006193032789 -0.3696723207422551 MGEIEDGEADHITTDVQGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 MGEIEDGEADHITTDVQGQK 20 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3;E9PG59 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 202.5 1.1546e-21 419200000.0 609230.0 514000.0 473380.0 448670.0 538950.0 640760.0 644320.0 603070.0 837790.0 712600.0 False True 605949.9733718167 531108.1792804382 540027.7893072792 505471.5759968287 607582.087893078 596465.7693867974 613151.780058575 648074.1457274092 631327.8803108445 667121.2579124462 0.9083055983974391 0.7961194055521186 0.809489703561737 0.7576907046532272 0.9107521019406907 0.8940889865408521 0.919100947220971 0.9714488004105293 0.9463465192016124 1.0 19.347589488154547 2.50647146043482 1.0535947819101021 0.9713098967383351 0.8192405355534004 0.6602190978434794 0.043745856640170784 0.30600773975068385 0.6881068415496328 0.026332583005222517 0.019183971254818483 320.97518691505803 -2.50647146043482 -0.15206936118493475 MGESDDSILR ddPTM_BT-474_Trastuzumab_2h_R1 2 MGESDDSILR 10 0 Q8WVC2;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 ; 211.85 1.1916e-07 4161900000.0 3353200.0 3566900.0 3285100.0 3082700.0 2978900.0 3586800.0 3561900.0 3206300.0 4179800.0 3408500.0 False True 3335146.7437755396 3685622.110263421 3747613.5253989194 3472969.5039236443 3358245.2576763905 3338852.958419004 3389597.289220627 3445570.387261504 3149744.2964505004 3190966.611836333 1.045183842226489 1.1550174472500747 1.1744446060631917 1.0883753816292754 1.0524225622479304 1.0463453130578404 1.0622478081241928 1.0797889186557963 0.987081558536863 1.0 21.60556208261387 3.413369777311103 3.5697626034519976 1.0465594806454883 1.128596180796294 0.4674291662348795 0.04120594635833036 0.2103650841967162 5.4333242841135965 0.01161705878950625 0.016571037491652674 2590.417571233883 -3.413369777311103 0.08203670015080577 MGET(ph)EGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MGETEGK 7 0 B0QXZ5;O96015 B0QXZ5 DNAL4 Dynein light chain 4, axonemal 1 MGET(1)EGK 75.109 0.046533 0.0 412660.0 373670.0 351470.0 363330.0 341620.0 401280.0 436570.0 421970.0 561160.0 430260.0 True False 410438.2844108365 386107.3800617153 400953.9209679946 409327.54074693547 385123.2820596221 373540.4581115143 415451.44124064443 453459.5441202434 422869.63715875446 402800.4384358817 1.018961861125607 0.9585574970102134 0.9954158007497278 1.0162043078612308 0.9561143566652958 0.9273586184811836 1.0314076192515778 1.1257672555697222 1.0498241729845272 1.0 18.61970572811152 2.003702393294752 23.609124684318235 1.0740253281275292 0.9792872909686468 0.4470114656123362 0.03950067710751586 38.37568427552425 244707.549278742 0.01453223217799179 0.010674636390171794 100.856151754912 -2.003702393294752 -0.0947380371588824 MGFCTDREDINSLCMTVVQNLMER ddPTM_BT-474_Trastuzumab_2h_R1 3 MGFCTDREDINSLCMTVVQNLMER 24 1 Q01581;D6RIW1 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ;; 248.7 3.6108e-38 449084000.0 203702.0 233048.0 222274.0 229762.0 214676.0 240279.0 250555.0 231779.0 273341.0 267033.0 False True 202605.29106542002 240804.86179950932 253568.24715975774 258849.8456419712 242013.71611565858 223669.07828592634 238434.69743695072 249075.52592991412 205979.77313174706 249990.72532154678 0.8104512309599567 0.96325518272639 1.014310618258375 1.0354377959783487 0.9680907793854037 0.8947095057156036 0.9537741735429093 0.9963390666175496 0.8239496599996208 1.0 17.931515046200907 4.601275634608115 0.003020195558593606 1.8912414735999183 7.320504530015144e-05 0.010899241954630434 0.0736642156082883 627753.7888957671 307.4802504631919 94244.68945830995 98320.59913964709 39927.823273310176 -4.601275634608115 -1.8911682685546183 MGGAGGEGS(ph)DDDTSLT ddPTM_BT-474_Trastuzumab_2h_R1 11 MGGAGGEGSDDDTSLT 16 0 Q9Y365;F5H8H3;F5GY11 Q9Y365 STARD10 PCTP-like protein 1 MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(0.999)DDDT(0.001)SLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(1)DDDTSLT;MGGAGGEGS(0.998)DDDT(0.002)SLT;MGGAGGEGS(1)DDDTSLT 269.15 3.9866e-27 22878351000.0 12432225.0 13521992.0 11854244.0 12170899.0 12388499.0 13575385.0 13811639.0 12106140.0 15340543.0 13586692.0 True False 12365291.281950047 13972063.329503208 13523218.516264064 13711733.5654896 13966100.915263588 12636950.58796895 13143517.255985267 13009561.64053333 11560071.730394682 12719577.684407745 0.9721463706383902 1.0984691218664295 1.0631814083608657 1.078002265931996 1.0980003630453776 0.9935039434100015 1.0333296892472466 1.0227982377497533 0.9088408449728296 1.0 23.6005474352485 1.7366292827686391 1.2143109715258216 0.9627737254611002 1.0590467596544186 0.3719547764263744 0.04548256003908603 0.4542576735968202 1.2576372728644707 0.0367356766602457 0.014317086628525693 54.52921966067331 -1.7366292827686391 0.09627303419331845 MGGDIANR ddPTM_BT-474_Trastuzumab_2h_R1 3 MGGDIANR 8 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;; 138.83 0.0016023 697760000.0 1183560.0 1240880.0 1190170.0 1287750.0 1228970.0 1385500.0 1325320.0 1222760.0 1538960.0 1370370.0 False True 1177187.8444658795 1282181.9406722004 1357735.5908569102 1450779.0179640183 1385472.0448241113 1289723.6461161852 1261209.208385942 1314008.5602494692 1159703.9290074802 1282911.8133672157 0.9175906186226113 0.999431081164418 1.0583233989351981 1.1308485921227953 1.079943321425741 1.0053096656200327 0.9830833228323687 1.024239192872217 0.9039623120810183 1.0 20.290990573118545 2.5118678560643524 7.147404606799295 0.9857663109426505 1.041724953863016 0.17566905377605968 0.05938097885829808 0.44025618974125 73.38187763062555 0.020966103050062187 0.019329998251288793 324.9883972569781 -2.5118678560643524 0.05595864292036545 MGGEEAEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 MGGEEAEIR 9 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;; 126.41 0.0011033 907730000.0 1265690.0 1524340.0 1410850.0 1412620.0 1349170.0 1445520.0 1446570.0 1289630.0 1728070.0 1505770.0 False True 1258875.6656713793 1575076.7354170114 1609485.416671963 1591457.5471608087 1520978.8023428945 1345594.6047880696 1376593.8826659606 1385868.7392084498 1302210.3034516533 1409670.4694454446 0.8930283303491581 1.1173368312359104 1.1417458558985947 1.128957143996127 1.0789605339049473 0.9545455012031414 0.9765359440405273 0.983115394162752 0.9237693004691618 1.0 20.426926520842056 2.7442616773621644 22.77674465688564 0.9686939299421234 1.0815625720123923 0.36721695598242965 0.0679470010921324 142.69488050593324 570089.7519879274 0.021065831610221523 0.021743706503321285 554.95999472339 -2.7442616773621644 0.11286864207026881 MGGEEKPIGAGEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MGGEEKPIGAGEEK 14 1 P26639;P26639-2;D6RCA5;D6R9F8;D6RDJ6;D6RJ97;D6RHV7;D6RCS6 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ; 180.49 1.5931e-06 1588150000.0 2014910.0 1608720.0 1496470.0 1299440.0 1273390.0 1818560.0 2006900.0 1803450.0 2985750.0 1921690.0 False True 2004061.9484375454 1662265.272708226 1707159.9684495823 1463948.970765414 1435548.6685261438 1692847.227629772 1909818.5798974952 1938032.5967335429 2249951.9195002373 1799046.098958417 1.1139580856754172 0.9239703605541947 0.9489250828191487 0.8137362192180555 0.7979499076523247 0.9409693440373037 1.0615728974389325 1.0772556622398914 1.2506360569653432 1.0 20.778800724166267 2.1463350353787103 2.55488657340308 1.112990129110379 0.9117433354706844 0.43070583993713596 0.09908383834828967 0.268137357234195 3.5021145431032785 0.0468623846019805 0.030387265302539535 140.06674472459173 -2.1463350353787103 -0.20124679363969455 MGIDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 MGIDHK 6 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ; 84.025 0.05632 475080000.0 869260.0 875970.0 762560.0 766220.0 785720.0 825400.0 899540.0 818820.0 1086950.0 888730.0 False True 864580.0007438642 905126.1319149535 869921.8197096592 863223.3734376937 885776.7846726953 768342.0407826047 856025.8136234948 879924.5062837122 819085.7368837909 832010.490519967 1.0391455523638202 1.0878782686373252 1.0455659268983488 1.0375150112569134 1.0646221348953508 0.923476385859543 1.028864207094936 1.0575882351360752 0.9844656362107901 1.0 19.6662421933389 MGIGGLDKEFSDIFR ddPTM_BT-474_Trastuzumab_2h_R1 2 MGIGGLDKEFSDIFR 15 1 I3L0N3;P46459;P46459-2 I3L0N3 NSF Vesicle-fusing ATPase 0 ; 157.8 1.7203e-06 407160000.0 499270.0 610790.0 606910.0 603490.0 558840.0 665870.0 725410.0 582400.0 931740.0 697850.0 False True 496581.98579411174 631119.7759196486 692357.6526437134 679891.7721227764 630004.9614958105 619839.9741893793 690319.1469646925 625861.6453672762 702125.1616763456 653312.6155405559 0.7600985714675599 0.9660302907168802 1.059764707085675 1.040683672639979 0.9643238879973863 0.9487647405622481 1.0566444463857736 0.9579818764856292 1.0747154501147997 1.0 19.31741397304939 4.717576134314467 3.5299938340384953 1.0083536088659935 0.7359178388086349 0.7525027563818115 0.04321708488179356 0.124349878140201 2.765289625627482 0.01025378563285083 0.08731439897390816 52188.65859330035 -4.717576134314467 -0.27243577005735853 MGIISIS(ph)T(ph)IQKM ddPTM_BT-474_Trastuzumab_2h_R1 1 MGIISISTIQKM 12 1 X6RDV4;Q8WWT9-4 X6RDV4 SLC13A3 2 MGIIS(0.001)IS(1)T(1)IQKM 83.647 0.028095 184540000.0 27717.0 48842.0 39597.0 50835.0 63776.0 37760.0 49613.0 37522.0 23412.0 48030.0 True False 27567.774751648187 50467.67644438749 45171.91341670611 57270.70578777006 71897.49557003236 35149.74007747903 47213.02964993493 40322.08217285533 17642.426304727298 44964.68427944822 0.6130983724987134 1.1223847615773095 1.0046087088251303 1.2736819285073127 1.598976990991443 0.7817188231330413 1.0500024720848389 0.8967500343660844 0.3923618410191091 1.0 15.4565047183713 1.5347158457466903 3.7760248434342154 0.6809115905050638 1.0798141883636923 0.2036928001753494 0.285178807263587 0.2669003871324357 8.393847692762948 0.18267877508020094 0.07387336557216753 34.254359058746225 -1.5347158457466903 0.39890259785862847 MGITEYNNQCR ddPTM_BT-474_Trastuzumab_2h_R1 1 MGITEYNNQCR 11 0 A0A0A0MSX9;P41252;J3KR24;Q5TCD1 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 110.38 0.0024358 0.0 65799.0 54412.0 48911.0 48580.0 40912.0 63185.0 67656.0 52079.0 93262.0 63261.0 False True 65444.745494956165 56223.07052725143 55797.243657966785 54730.2230189804 46121.90069557769 58817.16967149132 64383.22080898141 55965.399431803606 70278.82974677412 59223.62881953304 1.1050445033413976 0.9493351158635526 0.9421449642674349 0.9241281581335551 0.7787753235473109 0.9931368753292661 1.0871204972118602 0.9449843001404397 1.1866687527866389 1.0 15.853885271273127 2.4810325852948414 24.896296302996426 1.0401624544153305 0.9342902336179602 0.24314216864468352 0.09384789714134639 243.6731889257205 1551038.1182304535 0.032117931222762665 0.027455639924288382 302.71405471897333 -2.4810325852948414 -0.10587222079737035 MGLAMGGGGGAS(ph)FDR ddPTM_BT-474_Trastuzumab_2h_R1 15 MGLAMGGGGGASFDR 15 0 A0A087X0X3;P52272-2;P52272;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR;MGLAMGGGGGAS(1)FDR 265.36 3.510099999999999e-25 9057590000.0 8738733.0 6778225.0 6897777.0 7951183.0 8571511.0 8060191.0 5960164.0 6388979.0 10015065.0 8622264.0 True False 8691684.63249251 7003834.1216014605 7868924.045047529 8957801.952546842 9663042.118523955 7503008.967818732 5671848.097282458 6865757.055557992 7546986.425745503 8071983.729628397 1.076771822592938 0.8676719820301088 0.9748438932259572 1.109739842471068 1.1971087210019444 0.9295123998179988 0.7026585145933598 0.8505662654344901 0.9349605597003523 1.0 22.944491835789247 2.482179471452914 24.865294180250114 0.848404480389746 1.0378642882760107 0.35947725776201145 0.10802563976266832 216.07472409414441 1062193.5775993709 0.038242898815574314 0.0328577387210993 303.5145193635333 -2.482179471452914 0.1894598078862647 MGLGHEQGFGAPCLK ddPTM_BT-474_Trastuzumab_2h_R1 1 MGLGHEQGFGAPCLK 15 0 Q9UGI8-2;Q9UGI8;F8WDI4 Q9UGI8-2 TES Testin 0 102.28 0.001564 566730000.0 188210.0 226290.0 218520.0 171630.0 187480.0 241060.0 228330.0 257960.0 277840.0 271930.0 False True 187196.69827209684 233821.92585480638 249285.71659011082 193358.34040237966 211354.46671897982 224396.08959420252 217284.8055946955 277210.28509433824 209370.0548652585 254575.19458901387 0.7353296874595623 0.9184788259998719 0.9792223354382882 0.7595333108339063 0.8302241192830685 0.8814530809117813 0.8535191574555409 1.0889131815920496 0.8224291263069267 1.0 17.957732326563523 1.7846319945967013 24.99999999969649 0.9794103383633112 0.8554689216538054 0.2664764100836755 0.09016452793509275 114.2654629711433 62024.63103797047 0.040210052284757235 0.022462880677846856 60.90206165353096 -1.7846319945967013 -0.12394141670950576 MGLS(ph)MER ddPTM_BT-474_Trastuzumab_2h_R1 7 MGLSMER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGLS(1)MER;MGLS(1)MER;MGLS(1)MER;MGLS(1)MER;MGLS(1)MER;MGLS(1)MER;MGLS(1)MER 146.27 0.0023392 13378910000.0 7238040.0 4561690.0 4925120.0 6488220.0 6450490.0 6086910.0 4245370.0 4101090.0 7869260.0 6550740.0 True False 7199071.1968618445 4713523.094050169 5618534.086089541 7309627.986747814 7271921.66645035 5666136.238744907 4040005.23421168 4407134.160713057 5929986.315681632 6132666.164829321 1.1738893008962934 0.7685928057004145 0.9161649982370941 1.1919168254532324 1.1857683870279176 0.9239270631165364 0.6587681647145581 0.7186326537693923 0.9669507774106386 1.0 22.548082988515127 2.4746253788284553 24.457855691096523 0.796357185866709 1.0347683584642802 0.27283050927708474 0.15726152699511411 72.00829020228089 705609.9010868702 0.056326409973438574 0.04740684451228446 298.28085468067115 -2.4746253788284553 0.23841117259757116 MGLSMER ddPTM_BT-474_Trastuzumab_2h_R1 4 MGLSMER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;; 117.16 0.012315 658630000.0 706300.0 870890.0 830120.0 828180.0 672830.0 810750.0 811240.0 627740.0 1118740.0 779090.0 False True 702497.3592773066 899877.0471858773 946993.6804676126 933027.5030847918 758510.9123241483 754704.7608002154 771997.221962252 674585.1463991322 843041.517347967 729367.8091874927 0.9631592598799781 1.2337767527584333 1.298376029951956 1.2792276973728436 1.0399566621525576 1.0347382367216724 1.0584470718857857 0.9248902102638891 1.1558523789075714 1.0 19.476287001845407 3.1722828463294617 7.94187652283775 1.0254549541533908 1.2037245108923535 0.364988337597826 0.10125587433146072 0.2459061866284703 25.793245853252714 0.02962053176025134 0.03554389176916389 1486.9037143042756 -3.1722828463294617 0.17826955673896272 MGPAIER ddPTM_BT-474_Trastuzumab_2h_R1 3 MGPAIER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 83.61399999999998 0.051530999999999993 1301230000.0 1135690.0 1843960.0 1649990.0 1728830.0 1711660.0 1539810.0 1520450.0 1345200.0 1322540.0 1506250.0 False True 1129575.5712270208 1905335.0939026407 1882294.2500298242 1947699.7007390661 1929629.755196335 1433366.5590228545 1446900.024816953 1445585.6547871933 996617.7381280564 1410119.8354344978 0.801049345482731 1.3511866481301946 1.3348470128071321 1.3812299152142093 1.368415440097516 1.0164856368970896 1.0260830239091858 1.0251509258018254 0.7067610234849085 1.0 20.427386340913298 2.608060496385837 4.787556249123659 0.9608379209874921 1.2645397275467032 0.39609326547035306 0.18082259650526292 0.2404999621554281 8.346755125120804 0.05989275972124294 0.056077883705119416 405.56502594167495 -2.608060496385837 0.3037018065592111 MGPGAASGGERPNLK ddPTM_BT-474_Trastuzumab_2h_R1 4 MGPGAASGGERPNLK 15 1 Q9H0U4;E9PLD0 Q9H0U4 RAB1B Ras-related protein Rab-1B 0 ;;; 212.11 9.4961e-10 4171730000.0 2821250.0 2912930.0 2910340.0 2639550.0 2861540.0 3497910.0 3076140.0 2951880.0 3607680.0 3194750.0 False True 2806060.7034703405 3009885.114146631 3320090.5748712355 2973716.7593608378 3225940.157323604 3256107.714894456 2927335.3562040385 3172164.274942918 2718615.6044352716 2990858.319836914 0.9382125140663131 1.006361650160264 1.1100795222731492 0.9942686818822595 1.0786001248964239 1.0886867135424876 0.9787609586146029 1.0606200413785867 0.9089750545534074 1.0 21.51212813939028 1.2471531825314464 24.992009821548034 0.9544875178866582 1.0344949652342041 0.24018351709167474 0.05496049983264224 218.3985262663822 635238.7130845677 0.03662010153285024 0.012903055999751152 17.66660840020537 -1.2471531825314464 0.08000744734754595 MGPGIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 MGPGIDR 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;; 108.98 0.016588 1346740000.0 1496510.0 1854650.0 1623900.0 1793880.0 1605200.0 1693460.0 1758360.0 1551070.0 1893250.0 1718700.0 False True 1488452.9564378923 1916380.9040904006 1852531.0048081658 2020985.0240693418 1809612.7052341923 1576395.0961760497 1673301.4092124952 1666818.7195738698 1426683.905750254 1609011.0945468987 0.9250731467809078 1.1910302611244938 1.1513475644056033 1.2560416959949279 1.1246738517634545 0.9797291650247857 1.03995641477146 1.0359274247535564 0.8866836969523889 1.0 20.6177428431746 2.7828275658153694 5.981399475723515 0.9986633621566581 1.1421966289057106 0.38169266553890424 0.08874950772352272 0.22290022599468037 20.923127709949334 0.027273991994110635 0.028636582574789973 606.4954761547637 -2.7828275658153694 0.14353326674905253 MGPLGLDHMASS(ph)IER ddPTM_BT-474_Trastuzumab_2h_R1 1 MGPLGLDHMASSIER 15 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGPLGLDHMAS(0.025)S(0.975)IER 154.49 1.5897e-06 77698000.0 80271.0 92844.0 79414.0 91751.0 86149.0 82606.0 69901.0 66650.0 104580.0 94204.0 True False 79838.82985494647 95934.25641461679 90594.80092113785 103366.66719255794 97119.56450487187 76895.6416536078 66519.62158224861 71623.76144184227 78807.66030020417 88191.820067898 0.9052861114951403 1.0877908670073704 1.0272472078633803 1.1720663788657153 1.101230980720213 0.8719135356817289 0.7542606732805357 0.8121361072568845 0.89359376231867 1.0 16.42835722926933 2.676202971125507 5.4607920430652594 0.8397849695089757 1.0647730631196277 0.5356692186425294 0.08796919122578448 0.14637464394852343 8.938987955340775 0.028380705880924676 0.026888791945193606 474.4636779834571 -2.676202971125507 0.22498809361065197 MGPLGLDHMASSIER ddPTM_BT-474_Trastuzumab_2h_R1 13 MGPLGLDHMASSIER 15 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;;;;;;;;;;; 239.31 8.4605e-18 13336410000.0 5423820.0 6908080.0 6829520.0 7035520.0 6195760.0 6498890.0 6883010.0 5380550.0 7709490.0 6425750.0 False True 5394618.755763047 7138011.266777448 7791057.052748003 7926216.110631888 6984753.310853358 6049637.031041522 6550052.510648388 5782073.962879287 5809589.491373318 6015653.133638644 0.8967635992170386 1.1865729469777344 1.2951306998040766 1.3175985939597579 1.1610964189068098 1.005649244836416 1.0888348056541794 0.9611714363228132 0.9657454248628385 1.0 22.520289952030144 2.772620295599725 4.486849020789486 1.0046731890679141 1.1893926769190761 0.35689768274577705 0.11135302476979372 0.2322070472099142 11.280441744042072 0.03684675377566875 0.03804632370143497 592.40715551665 -2.772620295599725 0.184719487851162 MGPLINRPHLER ddPTM_BT-474_Trastuzumab_2h_R1 2 MGPLINRPHLER 12 1 P49189-3;P49189;P49189-2 P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase 0 ; 141.73 3.6508e-05 2877100000.0 532950.0 647840.0 622530.0 650110.0 533260.0 602670.0 558610.0 513350.0 634650.0 502640.0 False True 530080.6564163112 669402.9627724496 710176.8128722383 732413.8593427208 601167.5001203498 561008.8414325808 531587.9002025711 551658.7837384816 478249.01137430297 470561.0848682457 1.126486387128104 1.422563370194283 1.5092128008653407 1.5564692510597053 1.27755464583025 1.1922125723372556 1.1296894649743774 1.1723425533434044 1.0163377864283227 1.0 18.84402248987999 2.7584903282745707 2.1164194147322686 1.106715108714197 1.4110671415468494 0.587407273163791 0.11963748589817984 0.24050796461745397 2.1243305433447097 0.04424042086796308 0.044381450749082646 573.4430958427653 -2.7584903282745707 0.30435203283265233 MGPPVGGHR ddPTM_BT-474_Trastuzumab_2h_R1 10 MGPPVGGHR 9 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;;;;;;;; 134.81 0.00023843 1876153000.0 1553918.0 1716698.0 1717767.0 1547627.0 1434432.0 1557258.0 1727551.0 1407670.0 2289693.0 1707707.0 False True 1545551.878144521 1773837.2551641432 1959613.662501577 1743556.4195182305 1617098.412655429 1449608.4198510267 1643982.7582443047 1512717.4834034252 1725428.840464289 1598719.6772184793 0.9667435136806085 1.1095361372234693 1.225739377844524 1.0905954585807964 1.0114959086942157 0.906730829993359 1.0283120810175903 0.9462055824791721 1.0792566483364137 1.0 20.608485565215204 3.2203096307480563 4.1186972497786645 0.9861947622660914 1.1096444830376517 0.32258533734063255 0.072589194842807 0.2201080634252365 8.380021904759474 0.021177920767910748 0.027040479295700862 1660.7705337068405 -3.2203096307480563 0.12344972077156036 MGPSGGEGMEPER ddPTM_BT-474_Trastuzumab_2h_R1 2 MGPSGGEGMEPER 13 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ; 149.94 9.0811e-05 1580120000.0 945730.0 1097330.0 1006150.0 1063090.0 1006340.0 1169960.0 1068970.0 972680.0 1018200.0 1005560.0 False True 940638.2947604813 1133853.9657000082 1147807.1743874243 1197677.0849989257 1134491.4339555064 1089083.4189896006 1017259.8372380397 1045266.3207689604 767278.2531809898 941384.2998967711 0.9992075445316312 1.204453872689764 1.2192758839437716 1.2722509660828831 1.2051310331815719 1.1568956685479306 1.0805999604514211 1.1103502797779616 0.8150531650731022 1.0 19.844424266862802 1.4396523392405616 2.9067643208555625 0.910410727441779 1.1712955185158156 0.5640587347039783 0.08622253976726936 0.17435047929626815 2.69966513292789 0.0675669918494702 0.022569855887115495 27.52024774617741 -1.4396523392405616 0.2608847910740366 MGPSGGEGMEPERR ddPTM_BT-474_Trastuzumab_2h_R1 17 MGPSGGEGMEPERR 14 1 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;;;;;;;;;;;;; 260.67 2.8853e-24 109266313000.0 18898948.0 23320566.0 22486024.0 23113315.0 21598149.0 22006054.0 22454249.0 19196637.0 23037947.0 22329899.0 False True 18797198.16383854 24096776.941730157 25651860.727175675 26039458.309138402 24348545.252891332 20484827.283659093 21368051.192308918 20629187.531487536 17360553.654523898 20904785.728231672 0.8991815753678422 1.1526918885940904 1.2270807776103216 1.2456218708796625 1.1647354615076921 0.9799108945658587 1.022160737263698 0.9868165021958611 0.8304583400287462 1.0 24.317329920202923 2.7235909247899484 8.570259230488192 0.9697249867641216 1.1496788359426477 0.4240061899654214 0.10081439185848488 0.2177073695508469 107.06278216999951 0.03326723563914187 0.03224908168275482 529.1647726431024 -2.7235909247899484 0.1799538491785262 MGPSGGEGMEPERRDS(ph)QDGSSYR ddPTM_BT-474_Trastuzumab_2h_R1 35 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 MGPSGGEGMEPERRDS(0.834)QDGS(0.083)S(0.083)YR;MGPSGGEGMEPERRDS(0.934)QDGS(0.054)S(0.012)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.992)QDGS(0.004)S(0.005)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.99)QDGS(0.004)S(0.004)Y(0.003)R;MGPSGGEGMEPERRDS(0.725)QDGS(0.257)S(0.018)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.835)QDGS(0.151)S(0.014)YR;MGPSGGEGMEPERRDS(0.803)QDGS(0.052)S(0.145)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.716)QDGS(0.267)S(0.017)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.568)QDGS(0.412)S(0.02)YR;MGPSGGEGMEPERRDS(0.997)QDGS(0.002)S(0.002)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.997)QDGS(0.001)S(0.001)YR;MGPSGGEGMEPERRDS(0.999)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.346)QDGS(0.327)S(0.327)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.993)QDGS(0.006)S(0.001)YR;MGPSGGEGMEPERRDS(0.978)QDGS(0.012)S(0.011)YR;MGPSGGEGMEPERRDS(0.996)QDGS(0.002)S(0.002)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR 354.91 4.5099999999999974e-102 87652445000.0 7181574.0 9399363.0 9451762.0 11772042.0 10043312.0 10899283.0 11958985.0 10027151.0 13040770.0 12851192.0 True False 7142909.203531876 9712215.115420079 10782487.933411958 13262381.31018534 11322268.251825953 10145841.220362434 11380483.207790852 10775427.924461072 9827046.970865302 12031017.92410098 0.5937078016668013 0.8072646202250443 0.8962240769180535 1.1023490608901552 0.9410897999864805 0.8433069657421015 0.9459285390135648 0.8956372596599109 0.816809270242994 1.0 23.520255375879707 4.634318037403492 2.115655017825442 0.9290746341918137 0.5439202402099653 0.6522099908092849 0.07571624755608257 0.33542875404954464 1.9913922876424148 0.019974306476731304 0.22585925500096887 43084.20041207039 -4.634318037403492 -0.38515439398184836 MGPSGGEGMEPERRDSQDGS(ph)SYR ddPTM_BT-474_Trastuzumab_2h_R1 4 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 MGPSGGEGMEPERRDS(0.309)QDGS(0.383)S(0.309)YR;MGPSGGEGMEPERRDS(0.086)QDGS(0.454)S(0.454)Y(0.005)R;MGPSGGEGMEPERRDS(0.264)QDGS(0.368)S(0.368)YR;MGPSGGEGMEPERRDS(0.38)QDGS(0.523)S(0.097)YR 98.747 0.0022699 8064140000.0 740442.0 926390.0 928110.0 1153880.0 995400.0 1017580.0 1096220.0 932080.0 1196070.0 1199150.0 True False 736455.5425428392 957224.3311354202 1058779.820723264 1299961.089690018 1122158.2898019664 947237.0897256647 1043191.6506329325 1001636.5426063371 901314.575016879 1122619.220356034 0.6560154406667609 0.8526705349226432 0.9431335233931558 1.1579715241983302 0.9995894150521301 0.8437741600622626 0.9292479869550858 0.8922317776535771 0.8028675784929379 1.0 20.098437234320095 4.65601936267171 2.5240426383060273 0.9436220721599685 0.6215813225149327 0.4777045268754727 0.09227032380669575 0.38886747389837856 3.5430342092002594 0.024820024714274438 0.24637044528108998 45291.77724296891 -4.65601936267171 -0.3220407496450358 MGPSGGEGMEPERRDSQDGSS(ph)YR ddPTM_BT-474_Trastuzumab_2h_R1 1 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 MGPSGGEGMEPERRDS(0.225)QDGS(0.108)S(0.667)YR 187.61 1.8731e-17 1266700000.0 109150.0 164220.0 162160.0 207270.0 180060.0 198180.0 218810.0 156990.0 227260.0 240540.0 True False 108562.34852770499 169685.96342691383 184990.71848001247 233510.36074812818 202989.57370076564 184480.2830655402 208225.32436462713 168705.39097906704 171254.81812798255 225188.5312633454 0.4820953710149093 0.7535284433667521 0.8214926286084977 1.03695494365586 0.9014205677436596 0.8192259260743648 0.9246710886937632 0.7491739922659539 0.760495293286982 1.0 17.780773828005813 4.716809733715611 1.975836957149744 0.8689711117481003 0.37908104476300614 0.6443090302835515 0.0892551675671033 0.47657286679857586 2.063055508127783 0.02391624664931357 0.4174743815156523 52096.64234662776 -4.716809733715611 -0.48989006698509413 MGPVMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MGPVMDR 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 110.36 0.015867 359870000.0 277370.0 399880.0 357710.0 328700.0 267650.0 348490.0 346030.0 309430.0 448270.0 316530.0 False True 275876.6707387041 413189.7640674354 408072.4587289427 370313.38629762956 301733.64101416146 324399.70655722107 329291.2069370324 332521.2378537023 337799.86501025554 296328.78440503275 0.9309816840527582 1.3943625655436593 1.3770935535279445 1.249670655657508 1.018239391154594 1.0947289754808969 1.1112359793132531 1.122136138483261 1.1399495519427456 1.0 18.176839246201503 3.284737675883631 10.567046199453953 1.0921212022438485 1.2593752688488504 0.2642929709024835 0.12550614153050033 0.6468332089893335 144.35961146873805 0.033979266804662206 0.04593702980607151 1926.3609942066594 -3.284737675883631 0.16725406660500197 MGQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR ddPTM_BT-474_Trastuzumab_2h_R1 11 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MGQAPSQSLLPPAQDQPRS(0.986)PVPS(0.006)AFS(0.008)DQS(0.001)R;MGQAPSQSLLPPAQDQPRS(0.999)PVPS(0.001)AFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(0.99)PVPS(0.007)AFS(0.003)DQSR;MGQAPSQSLLPPAQDQPRS(0.998)PVPS(0.002)AFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(0.999)PVPS(0.001)AFSDQSR;MGQAPSQSLLPPAQDQPRS(0.998)PVPS(0.002)AFSDQSR;MGQAPSQSLLPPAQDQPRS(0.979)PVPS(0.02)AFS(0.001)DQSR;MGQAPSQSLLPPAQDQPRS(0.998)PVPS(0.002)AFSDQSR;MGQAPSQSLLPPAQDQPRS(0.984)PVPS(0.016)AFSDQSR 285.29 4.072299999999998e-72 25621880000.0 3645243.0 4438111.0 4416169.0 5487057.0 4782236.0 4856989.0 4994971.0 4431672.0 5681995.0 5188103.0 True False 3625617.416712574 4585830.841740242 5037927.209170941 6181717.853599375 5391225.408066493 4521236.782552294 4753345.170087776 4762385.8682144405 4281743.467082226 4856993.8247815585 0.7464735487646281 0.9441706140004179 1.0372521339158838 1.272745668742413 1.1099922302884464 0.9308714290481181 0.9786599163118261 0.9805212936272628 0.881562468792061 1.0 22.21163222143366 4.667135932038562 2.7075638485567026 1.0260553475430436 0.7152103953098367 0.4048002617951365 0.10162727084207114 0.40828657473588387 4.406960355937055 0.027660146978554623 0.26220748001393585 46466.068897681296 -4.667135932038562 -0.31084495223320696 MGQTMER ddPTM_BT-474_Trastuzumab_2h_R1 4 MGQTMER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;; 110.12 0.015994 1489400000.0 866130.0 1132190.0 1024620.0 1060880.0 995660.0 989310.0 1025430.0 893600.0 1177490.0 1031900.0 False True 861466.8523160899 1169874.2597266927 1168877.589843306 1195187.299225522 1122451.3992608257 920921.3282852438 975826.0333769927 960284.9696088573 887313.3670576357 966043.2585459626 0.8917476983512357 1.2109957285841688 1.209964025423291 1.237198529830284 1.1619059388192206 0.9532920189012716 1.010126642616144 0.9940393052938722 0.9185027266720674 1.0 19.88172826752727 2.742423986645328 24.831622993577078 0.9793427920074429 1.1551996768641755 0.4386057429320105 0.09394603606695247 282.4305972760139 1815312.4384739327 0.02908566205946059 0.0297953331456364 552.6166765202212 -2.742423986645328 0.17585688485673256 MGS(ph)PAPLLPGDLLGGGSDSI ddPTM_BT-474_Trastuzumab_2h_R1 7 MGSPAPLLPGDLLGGGSDSI 20 0 Q9UPQ9-1;Q9UPQ9;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI 209.13 5.234299999999998e-22 206198000.0 379995.0 344563.0 300520.0 305082.0 317179.0 401631.0 389359.0 350840.0 499478.0 340612.0 True False 377949.1491414138 356031.5711622678 342830.6038333341 343705.34991923807 357569.86558277835 373867.19430767914 370524.2176741783 377021.462329422 376388.3395623005 318873.85054739576 1.185262286301013 1.1165279641183659 1.0751292501558622 1.0778724857156372 1.1213521114037885 1.172461127389025 1.1619774310063895 1.1823530266975701 1.1803675306588242 1.0 18.282626267754765 2.8985296498974407 5.698155604300748 1.1547718885731812 1.1098332679043017 0.007732961244571568 0.05805820144860504 0.4963540175432414 22.964901500124377 0.017025793408776413 0.018180154376733978 791.6434993987741 -2.8985296498974407 -0.04493862066887955 MGS(ph)VER ddPTM_BT-474_Trastuzumab_2h_R1 2 MGSVER 6 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGS(1)VER;MGS(1)VER 77.282 0.076395 929880000.0 1167220.0 1048540.0 862530.0 1127220.0 1054990.0 1019220.0 970850.0 862520.0 1446880.0 1189600.0 True False 1160935.8172103334 1083440.0200441862 983966.7267548422 1269925.9364235287 1189336.7230843648 948763.7203858091 923886.2764928406 926885.622187814 1090315.8111986946 1113678.709532201 1.0424333403104946 0.9728479235266008 0.8835283626533148 1.140298297483804 1.0679352248584726 0.8519187017450802 0.8295806219380072 0.8322738095416683 0.9790218685752554 1.0 20.086901652073667 2.7324578618011603 24.937929744980927 0.8779689107629673 1.0176557800857702 0.3419523005973848 0.0826997101223375 499.31402945927294 2040361.964822129 0.027156673570233342 0.02621768790768159 540.0797100225499 -2.7324578618011603 0.13968686932280283 MGSGVER ddPTM_BT-474_Trastuzumab_2h_R1 1 MGSGVER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 102.77 0.019834 327020000.0 295880.0 381780.0 332700.0 341120.0 358990.0 323320.0 345390.0 297530.0 371610.0 326710.0 False True 294287.01495535864 394487.3165091163 379541.2681197595 384305.7570241784 404705.2485995657 300969.64941341395 328682.16618206986 319733.1994267272 280031.694818884 305859.08808949625 0.962165344811492 1.2897681706083126 1.2409023726923014 1.2564797712066942 1.3231754894958245 0.9840140807761396 1.0746195845777695 1.045361121763272 0.9155578687168028 1.0 18.2225076184113 2.726488902478926 24.949531242770266 1.0157772213511291 1.2224790988260055 0.5245442943133343 0.09978260219190613 599.9842717620606 1240031.0603429358 0.03161330018100956 0.030004988631759173 532.7076118785785 -2.726488902478926 0.20670187747487634 MGSPAPLLPGDLLGGGS(ph)DSI ddPTM_BT-474_Trastuzumab_2h_R1 2 MGSPAPLLPGDLLGGGSDSI 20 0 Q9UPQ9-1;Q9UPQ9;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 MGSPAPLLPGDLLGGGS(0.5)DS(0.5)I;MGSPAPLLPGDLLGGGS(0.5)DS(0.5)I 160.15 2.5662e-11 17408400.0 44488.0 52192.0 49733.0 52014.0 47556.0 50989.0 48585.0 49306.0 53882.0 54813.0 True False 44248.48155108147 53929.17916926972 56734.9741130147 58598.9670668844 53611.97471350442 47464.25044519538 46234.757937276285 52985.46409079487 40603.50308180914 51314.78741222972 0.8622949403574036 1.0509481163010124 1.1056262136924142 1.1419508882719966 1.0447665754282598 0.9249624297163773 0.9010026206648042 1.0325574120602705 0.791263203638104 1.0 15.647087007567352 2.746320032441853 19.023909823290218 0.9379030048256709 1.050849414490043 0.26676955050353557 0.09096021107861792 31.880781084913217 78160.46900934726 0.028302500392753577 0.02930377263257852 557.5964915055331 -2.746320032441853 0.1129464096643722 MGSS(ph)PLEVPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MGSSPLEVPKPR 12 1 Q8NCE2;Q8NCE2-2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 MGS(0.253)S(0.747)PLEVPKPR 88.561 0.006005399999999999 999430000.0 372490.0 351440.0 328230.0 287530.0 343770.0 421680.0 443900.0 379260.0 564970.0 391650.0 True False 370484.55522752996 363137.46795003366 374441.930973696 323931.2685188847 387547.07181557384 392530.2541279491 422426.8611373253 407562.3070432578 425740.71371013974 366654.56169156573 1.0104457817687975 0.990407609480417 1.0212389810349096 0.8834780809065172 1.0569814542266165 1.0705724001278085 1.152111292952291 1.1115702615643555 1.1611493710755412 1.0 18.484061963055247 2.866492331974646 2.73246118125241 1.1126727877002496 0.9805288137828998 0.4988575482265828 0.05620656461439305 0.2033013074127284 2.9466279632158643 0.01745763713216883 0.018785856021871262 735.3470118673991 -2.866492331974646 -0.13214397391734978 MGT(ph)GIMLINLVMPMTGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 MGTGIMLINLVMPMTGTR 18 0 A0A6I8PL40 A0A6I8PL40 1 MGT(0.996)GIMLINLVMPMT(0.002)GT(0.002)R 42.277 0.068112 654570000.0 169210.0 231520.0 196560.0 221580.0 206430.0 190300.0 205020.0 199040.0 204130.0 194410.0 True False 168298.99216099834 239226.00324320482 224233.93946985266 249632.00528089097 232717.6368935301 177145.00891801514 195102.39934754313 213893.37550464045 153824.8967018614 182002.58735722504 0.9247065912896612 1.3144099032705765 1.2320370975261916 1.3715849258281503 1.2786501569714734 0.973310388001926 1.0719759657295775 1.1752216197059984 0.8451797248351313 1.0 17.473599434426195 2.743416055318703 24.924229071453677 1.0412822819301792 1.237899890407395 0.36278283106763076 0.13681116513251168 472.1153891589181 2423493.849501188 0.04225425692494802 0.043546620910695215 553.880474160731 -2.743416055318703 0.19661760847721577 MGVMSS(ph)PTENSFTLDADF ddPTM_BT-474_Trastuzumab_2h_R1 2 MGVMSSPTENSFTLDADF 18 0 P31350;P31350-2 P31350 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 MGVMS(0.016)S(0.844)PT(0.14)ENSFTLDADF;MGVMS(0.017)S(0.84)PT(0.142)ENSFTLDADF 147.26 5.6637e-07 25306000.0 37871.0 46517.0 48041.1 45824.0 46160.0 60433.0 50731.0 38344.4 61134.0 52997.0 True False 37667.10674386365 48065.290224879674 54804.86929927314 51625.313701559426 52038.20238824469 56255.40895398009 48276.94771876016 41205.85383691795 46068.34485363057 49614.68608698553 0.7591926849607569 0.9687714266822243 1.1046098166012392 1.040524848046984 1.0488467526935512 1.133845911175411 0.9730374517359635 0.8305172739514055 0.9285223486623007 1.0 15.598479605177086 -0.8220990170647788 5.3653158400111876 1.0000000106933493 0.9776681572556523 0.003988157162671313 0.11019249154341222 1.5401244645207692e-08 3.3489395919984955e-09 0.11483994797616974 0.027068022212969566 0.15062636061363954 0.8220990170647788 -0.022331853437697058 MGVMSSPT(ph)ENSFTLDADF ddPTM_BT-474_Trastuzumab_2h_R1 3 MGVMSSPTENSFTLDADF 18 0 P31350;P31350-2 P31350 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 MGVMS(0.083)S(0.444)PT(0.474)ENSFTLDADF;MGVMS(0.003)S(0.31)PT(0.686)ENSFTLDADF;MGVMS(0.004)S(0.397)PT(0.598)ENSFTLDADF 176.51 7.7506e-12 82500000.0 68765.0 85025.0 86947.0 78904.0 70273.0 96829.0 91804.0 62008.0 99289.0 83016.0 True False 68394.77688050976 87855.00572630214 99188.38184312811 88893.23830979066 79221.85000929623 90135.4391409484 87363.08979466309 66635.35183024404 74820.55635443662 77717.8478064266 0.8800395122991826 1.1304353916892342 1.2762625914471875 1.1437943898189105 1.0193520825051112 1.1597778590762131 1.124105881216115 0.8574008893840452 0.9627203849081575 1.0 16.245958329340606 1.7509150423979145 24.999999999968882 0.9308436325830656 1.1127279770524618 0.35042400126246265 0.10218656729129949 3.6298933099612376 7357.236311235216 0.047708372451465315 0.026456930781708732 56.35274066234603 -1.7509150423979145 0.18188434446939628 MHAPGK ddPTM_BT-474_Trastuzumab_2h_R1 5 MHAPGK 6 0 P62277;J3KMX5;E9PS50 P62277 RPS13 40S ribosomal protein S13 0 ;;;; 85.07700000000001 0.055124 3740650000.0 9402840.0 10089970.0 9418950.0 8760220.0 8715930.0 9439920.0 10249800.0 6402840.0 13198940.0 9523950.0 False True 9352216.154193727 10425808.551934332 10745056.28901896 9869262.953794405 9825852.022135459 8787360.549581453 9753978.015961599 6880652.433762723 9946238.093734711 8916123.357136184 1.0489105836236001 1.1693208061763571 1.2051264724168442 1.1069006740351295 1.1020318616690241 0.9855584313499125 1.0939707342827218 0.7717089768902384 1.115533926050278 1.0 23.08798514616158 2.6642818210691632 1.3643312207271272 0.9528701092882365 1.1424993276980977 0.3053940339435004 0.09632999236529537 0.4145154719283786 1.5690443648076224 0.04351490521366352 0.0385753619724813 461.6170285234388 -2.6642818210691632 0.18962921840986124 MHAPPINMESVHMK ddPTM_BT-474_Trastuzumab_2h_R1 2 MHAPPINMESVHMK 14 0 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 0 ; 94.728 0.0023421 658570000.0 496110.0 526480.0 552420.0 526450.0 512730.0 609690.0 617660.0 317060.0 699740.0 518720.0 False True 493438.99888300325 544003.5685361192 630195.9342792832 593098.5160218654 578023.1263111938 567543.5653558844 587781.4261096647 340720.62719805737 527298.4530356177 485614.8455014646 1.0161118496562005 1.1202366928761416 1.2977279012722902 1.2213352238220991 1.1902913011530873 1.1687113164133542 1.210386032376541 0.7016272882807282 1.0858367653301642 1.0 18.889453000651425 1.7632768997512407 24.999999999995833 0.9020070800187266 1.1797195572052697 0.48793271651617176 0.1143175213226455 10.382886388580797 10509.380508076807 0.051093980709946196 0.02833562170236875 57.9798249409287 -1.7632768997512407 0.277712477186543 MHDLNTDQENLVGTHDAPIR ddPTM_BT-474_Trastuzumab_2h_R1 9 MHDLNTDQENLVGTHDAPIR 20 0 O43684;O43684-2;J3QT28;J3QSX4 O43684 BUB3 Mitotic checkpoint protein BUB3 0 ;;;;;;;; 356.04 1.4489999999999995e-95 8512120000.0 1678856.0 1997384.0 1696827.0 1955649.0 1866995.0 1938770.0 1867812.0 503209.0 2007921.0 1377933.0 False True 1669817.2258344383 2063865.7189958764 1935725.4925153197 2203233.962882793 2104745.7467036564 1804747.3932736767 1777458.797825254 540761.0108235264 1513095.774312932 1289992.1362322054 1.2944398488440572 1.5999056591337 1.5005715446988421 1.707943716089599 1.6315957962745216 1.3990375154882437 1.3778834365741452 0.41919713743602743 1.1729496109428739 1.0 20.29893084035768 1.9151299051952495 6.647885875086919 0.8155130729535907 1.5265165268309606 0.6626651534550506 0.20968079435813983 0.12903141639774124 8.465949425091253 0.08769841207563119 0.05404165500586752 82.24886341189863 -1.9151299051952495 0.71100345387737 MHDQEEKIREQEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MHDQEEKIREQEEK 14 2 A0A0G2JRP8;H0YM25;A0A0G2JP21;A0A087X1J6;Q8N7Z2 A0A0G2JRP8 GOLGA6L22;GOLGA6L1 Golgin subfamily A member 6-like protein 22;Golgin subfamily A member 6-like protein 1 0 52.555 0.087537 401960000.0 189700.0 235610.0 206610.0 214400.0 234650.0 256090.0 243520.0 227420.0 236920.0 261820.0 False True 188678.6762776515 243452.13642074756 235698.89211368648 241543.01801707278 264531.28662048554 238387.10107101672 231740.00726326084 244391.23521536076 178534.24056535057 245110.42344462045 0.769770104535277 0.9932345307858865 0.9616028922855646 0.9854457212491672 1.079233118293939 0.9725702306775919 0.9454514581899024 0.9970658602798173 0.7283828980275419 1.0 17.90307231128176 -0.5530759261656413 15.48397880862761 0.999999999903441 0.9500332992838626 0.01918183025497977 0.10213301270576053 0.0 0.0 0.09386474668279268 0.022124132964586738 0.27984920264185015 0.5530759261656413 -0.04996670061957842 MHDYDGNNLLDGLELSTAITHVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 MHDYDGNNLLDGLELSTAITHVHK 24 0 Q8NI22-2;Q8NI22-3;Q8NI22;H7BZ18;A0A3B3IU18 Q8NI22-2 MCFD2 Multiple coagulation factor deficiency protein 2 0 160.88 6.9528e-12 163520000.0 130470.0 174180.0 126460.0 120300.0 133570.0 143060.0 162310.0 47643.0 299700.0 107890.0 False True 129767.56401657958 179977.47600596634 144264.4687899754 135529.96766536328 150579.34776858386 133170.59892701675 154458.4452155875 51198.362586251984 225842.95077425148 101004.36783072392 1.2847718054536088 1.7818781491469329 1.4282993091125753 1.3418228397063163 1.4908201595889798 1.318463763371116 1.5292254041374607 0.5068925600530144 2.2359721230347986 1.0 16.624058156636387 MHEFHS(ph)QENLVVHIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 MHEFHSQENLVVHIPK 16 0 H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8 H3BRG5;Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 1 MHEFHS(1)QENLVVHIPK;MHEFHS(1)QENLVVHIPK 174.2 6.606800000000001e-09 1002360000.0 1687620.0 1513220.0 1330620.0 1390780.0 1405940.0 1807850.0 1603670.0 137520.0 2147910.0 761950.0 True False 1678534.0414322075 1563586.6129391948 1517959.7300436248 1566852.6054001143 1584978.1253407435 1682877.5847211434 1526094.3554856824 147782.44071241052 1618586.3610194246 713321.6986617857 2.3531234849314004 2.1919796017316355 2.1280156385139635 2.1965581705135 2.22196819235166 2.3592126636246666 2.1394195050405505 0.20717502494268028 2.2690833098950227 1.0 19.44419333426706 1.8857595051141094 9.59084010219938 1.0885775879784325 2.2323765569523193 0.5181422483154543 0.47150815549915803 0.25464607826568547 19.893869516806337 0.1832599671055268 0.11614945218875097 76.8704644565952 -1.8857595051141094 1.1437989689738868 MHIVEQTEFIDDQTFQPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MHIVEQTEFIDDQTFQPHR 19 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 0 211.16 8.2152e-17 137070000.0 65109.0 76732.0 63364.0 80565.0 76345.0 75143.0 79866.0 49331.0 82802.0 79633.0 False True 64758.46037828998 79285.97823452642 72285.10043023867 90764.5207394844 86067.08321773272 69948.5412775955 76002.57646225186 53012.32971774233 62396.556589955144 74550.75376275857 0.8686493041286958 1.063516788667713 0.9696092498309293 1.2174862916654416 1.1544763650763659 0.9382673916375333 1.0194742859892927 0.7110904590776164 0.8369674810870257 1.0 16.18593531883612 1.8480563928683849 7.239628570427198 0.8232871335289026 1.0412679614387519 0.3388940050032889 0.11577598559453252 0.246396393161827 14.263763049091326 0.05034103457929878 0.030997163886628147 70.47845788650227 -1.8480563928683849 0.2179808279098493 MHMWVEDVLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MHMWVEDVLDK 11 0 Q9UHG3;Q9UHG3-2;F8W8W4;C9JGT6;C9JM55;C9K055 Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 0 136.48 0.0014228 0.0 183110.0 189400.0 197470.0 168090.0 200160.0 236240.0 203120.0 95509.0 294770.0 168660.0 False True 182124.15610543342 195704.0645052823 225272.05955999054 189370.17676534408 225649.18955873165 219909.28484914335 193294.3096062481 102636.3665648751 222127.88321563558 157895.97440290934 1.153443948106619 1.2394493605384553 1.4267118614763097 1.1993350525968496 1.4291003327477734 1.3927478878466668 1.2241876991303873 0.6500252267545078 1.4067989007042268 1.0 17.268614864235385 1.980244670119527 23.99557522039997 0.9693180149868791 1.3097457622563837 0.2994583033019196 0.1925245685414869 438.5734184878713 532706.9926804143 0.07490897231040207 0.04914425035270906 95.55307553758874 -1.980244670119527 0.34042774726950464 MHNYNYGGNLQENPSGPSLMHGQTWTS(ph)PAQGPGYSQGYR ddPTM_BT-474_Trastuzumab_2h_R1 1 MHNYNYGGNLQENPSGPSLMHGQTWTSPAQGPGYSQGYR 39 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 MHNYNYGGNLQENPS(0.002)GPS(0.005)LMHGQT(0.021)WT(0.066)S(0.905)PAQGPGY(0.001)SQGYR 104.13 2.6779e-05 220180000.0 5063.2 5868.1 3211.1 6192.9 3947.1 7012.8 6814.1 0.0 6942.4 4276.2 True False 5035.940293774405 6063.416161158641 3663.194968618453 6976.920505027658 4449.739788705383 6528.02164235553 6484.4759506101545 0.0 5231.538543393936 4003.289254960992 1.257950643345025 1.5146085568622554 0.9150462870198339 1.7427970003370743 1.1115209282444771 1.6306644927707428 1.619787014534212 0.0 1.3068100280065604 1.0 11.966970145109324 1.7638609486662853 24.99999999999993 0.6730564121775545 1.3958376276060487 0.3446268767864825 0.3914504570313271 13.900587391905768 13744.862771053282 0.16817419545253318 0.09326729107821953 58.05784995706228 -1.7638609486662853 0.7227812154284942 MHSLLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 MHSLLIK 7 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 105.39 0.007937300000000001 287720000.0 534110.0 562750.0 636550.0 525010.0 469240.0 570010.0 543580.0 324110.0 832780.0 503060.0 False True 531234.4111052002 581480.7935604414 726170.7070082141 591476.2121695116 528994.9325966182 530606.5503592113 517284.95872274623 348296.7339972324 627552.5276802841 470954.2801086656 1.1279957175091941 1.2346862914724408 1.5419133824214555 1.255910047219525 1.123240524482675 1.1266625504216288 1.0983761706197692 0.7395553001808757 1.3325126327241061 1.0 18.845227485310833 2.8371269421903595 1.4354765925427293 1.000409126054873 1.3021878811731051 0.27722256028037906 0.1700361900081236 0.45292824359864636 1.899717605619672 0.07068817406135758 0.07354587477756552 687.2692961712324 -2.8371269421903595 0.30177875511823204 MHSPQTSAMLFTVDNEAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 MHSPQTSAMLFTVDNEAGK 19 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;; 250.26 3.0291000000000004e-25 1272680000.0 526640.0 529180.0 514960.0 559620.0 538950.0 614160.0 585810.0 397087.0 857200.0 587520.0 False True 523804.6287552043 546793.4364039344 587461.8918874396 630467.834620868 607582.087893078 571704.5647771321 557472.1322884803 426719.6483069292 645954.5458915193 550023.9705988219 0.9523305469485774 0.9941265574455412 1.0680659812841582 1.1462551967225452 1.1046465615518384 1.0394175442112208 1.0135415219841226 0.7758200935176537 1.1744116264392184 1.0 19.069134968547694 1.9896334321116185 24.22161912592346 0.9425464827514775 1.0533575477623423 0.03697671606695441 0.10499809680598214 557.257003059449 1302038.126920531 0.04141215282525396 0.02868644701658211 97.64127282166334 -1.9896334321116185 0.1108110650108648 MIASDSHRPEVK ddPTM_BT-474_Trastuzumab_2h_R1 6 MIASDSHRPEVK 12 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ;;;;; 180.18 1.1876e-05 4048570000.0 3369259.0 4310748.0 3898419.0 4029041.0 4052140.0 4313186.0 4301990.0 4047325.0 5040640.0 4477696.0 False True 3351119.283903865 4454228.641277801 4447282.509534607 4539117.177493115 4568156.01008453 4015025.603967731 4093886.3085022797 4349356.943399918 3798441.8131155227 4191925.607731589 0.7994224128698896 1.0625733989797959 1.0609163724976505 1.0828238862639084 1.0897512116290953 0.9577998227264377 0.9766123475453654 1.0375558515108099 0.906132925190675 1.0 21.99918168354948 1.2530025204059934 24.96838711623773 0.953066430109183 1.0149213422424361 0.06069749208959063 0.08407413785378087 532.6219251037875 920851.5020132689 0.05552268153181563 0.02006856191351463 17.90616245755682 -1.2530025204059934 0.061854912133253115 MIATDPDDTHAYNVADFESLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 MIATDPDDTHAYNVADFESLSR 22 0 H0Y4P7;A0A087X0A8;D6RGG3;Q99715-2;Q99715-4;Q99715 H0Y4P7 COL12A1 Collagen alpha-1(XII) chain 0 ; 157.28 5.6009e-09 339930000.0 270930.0 359400.0 314240.0 312950.0 314180.0 375740.0 413460.0 325660.0 362600.0 367760.0 False True 269471.3429831529 371362.4117381123 358482.26057695603 352569.4379125139 354188.96070924454 349765.97819682135 393459.360229417 349962.40286797297 273242.0885910696 344289.24194482336 0.7826888271645126 1.0786349571667062 1.0412241130508728 1.0240501153068777 1.028754075231917 1.0159073696902667 1.1428163076105462 1.0164778919349993 0.7936410880792496 1.0 18.39326157595069 4.746816171617917 24.676086390616348 1.0232315480632521 0.7826886831570412 0.40493872168220935 0.08430640468512202 845.2721170129421 2526474.104500467 0.019731141228446436 0.22097045568407345 55823.38552203759 -4.746816171617917 -0.2405428649062109 MIDLS(ph)AFSRK ddPTM_BT-474_Trastuzumab_2h_R1 2 MIDLSAFSRK 10 1 Q8N1W2 Q8N1W2 ZNF710 Zinc finger protein 710 1 MIDLS(0.5)AFS(0.5)RK;MIDLS(0.5)AFS(0.5)RK 66.071 0.071047 288900000.0 266460.0 613650.0 589560.0 672600.0 596360.0 472190.0 420930.0 366430.0 254800.0 484950.0 True False 265025.4089664893 634074.9692907421 672564.9234526163 757751.091036769 672302.9110973489 439548.6167156993 400568.0077912462 393774.8672938381 192007.95414507584 454000.0758134168 0.583756309933764 1.396640668296566 1.4814202888570098 1.669054987885479 1.4808431692281245 0.9681685976112994 0.882308239868819 0.8673453778357302 0.42292493850592777 1.0 18.79233301286849 2.5455288424280176 3.359359316794949 0.8001861792762777 1.352978860174118 0.4035279845711903 0.3040660522361307 0.2510038875840718 5.54651185213209 0.1086534144477803 0.09809808885946052 351.17924630881333 -2.5455288424280176 0.5527926808978403 MIDQVFGVLES(ph)PELSR ddPTM_BT-474_Trastuzumab_2h_R1 7 MIDQVFGVLESPELSR 16 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 MIDQVFGVLES(0.995)PELS(0.005)R;MIDQVFGVLES(0.995)PELS(0.005)R;MIDQVFGVLES(0.942)PELS(0.058)R;MIDQVFGVLES(0.978)PELS(0.022)R;MIDQVFGVLES(1)PELSR;MIDQVFGVLES(1)PELSR;MIDQVFGVLES(0.995)PELS(0.005)R 200.39 3.7423e-11 421241000.0 331588.0 357777.0 330467.0 321475.0 330436.0 334630.0 321625.0 301755.0 348109.0 306148.0 True False 329802.7670508899 369685.39116423624 376993.8811293435 362173.70203842584 372515.0659523831 311497.8157342905 306066.77002318547 324273.4903808427 262322.2013716178 286609.37253351044 1.1507047523797544 1.2898579969537198 1.3153578258689544 1.2636491920587154 1.2997309287533105 1.0868375063270832 1.067888210764636 1.1314127221814023 0.9152603735627907 1.0 18.128726262984966 2.6596848484095896 4.486898097778056 1.0537174327345393 1.2681851275698406 0.7293304876991046 0.06800815790931758 0.12582299748730993 4.686915226276628 0.02247351131938309 0.021263287419887582 456.75661778538705 -2.6596848484095896 0.21446769483530126 MIEYDPERR ddPTM_BT-474_Trastuzumab_2h_R1 4 MIEYDPERR 9 1 O60832;O60832-2;C9IYT0;H7C0M1;H7BZF2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 ;;; 102.07 0.0071749 1340830000.0 1023770.0 1336360.0 1191390.0 1395240.0 1356130.0 1211670.0 1149230.0 1111920.0 1423700.0 1249990.0 False True 1018258.1360715397 1380839.9347533204 1359127.3562524794 1571877.2409428193 1528825.1170877449 1127910.1048643813 1093637.3544150668 1194897.1166153536 1072848.2116026082 1170214.5680297194 0.8701465217494023 1.179988672571586 1.161434315880062 1.3432384828274493 1.306448542733334 0.9638489689659514 0.9345613909562029 1.0210923272192653 0.9167961508195491 1.0 20.158341652851565 2.7156361550823482 24.016313696929043 0.9701927040121123 1.1815795007007872 0.4160714784307259 0.12114662539773635 487.5033465656581 510721.27565784426 0.040633550540319585 0.03833779269490478 519.5605347050326 -2.7156361550823482 0.21138679668867488 MIFDVESMKK ddPTM_BT-474_Trastuzumab_2h_R1 2 MIFDVESMKK 10 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 116.55 0.0017250999999999998 1689040000.0 1744700.0 1857620.0 1583030.0 1457820.0 1477360.0 1844880.0 1881690.0 1748010.0 3131600.0 1929230.0 False True 1735306.729054393 1919449.7587449972 1805906.8640565784 1642379.862526346 1665493.039001238 1717347.7879803884 1790665.4659461416 1878455.3824149251 2359859.1412901054 1806104.8897030975 0.9608006372983449 1.0627565263169916 0.9998903576156356 0.909349103637239 0.9221463540110484 0.9508571721228772 0.9914515353759471 1.040058854346893 1.3066013799885337 1.0 20.784450249219546 1.4809020972588134 4.572847267014669 1.1608580632030248 0.972920612726657 0.4415993122757217 0.08040620585985885 0.14567058377091008 6.415102844945902 0.04927303357050464 0.019711673136672648 30.26231149751988 -1.4809020972588134 -0.18793745047636778 MIIEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 MIIEEAKR 8 1 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 97.635 0.012975 184500000.0 224580.0 233420.0 206110.0 214880.0 184910.0 219670.0 255370.0 211600.0 318250.0 259360.0 False True 223370.8862331834 241189.2435946302 235128.4964597644 242083.78596785726 208457.1924525631 204484.7299475586 243016.7774918645 227390.66648302853 239821.5518315163 242807.4227507323 0.9199508141169861 0.9933355449443433 0.9683744170422206 0.9970197089748037 0.8585289118881947 0.8421683638456308 1.0008622254573623 0.9365062398296994 0.9877027197711277 1.0 17.889453000651425 1.215991805599321 1.5466583302383146 1.0007916566700443 0.9382952044015636 0.14498101596942714 0.05231764889377649 0.7906525429308469 3.5457863194860213 0.05141828470414391 0.015508500524536246 16.443406970006794 -1.215991805599321 -0.06249645226848077 MIKPFFHSLSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 MIKPFFHSLSEK 12 1 P10599 P10599 TXN Thioredoxin 0 ;;; 176.51 1.4904000000000003e-05 9360830000.0 10725890.0 10843170.0 10212590.0 8724390.0 7071000.0 10405370.0 10961550.0 9428080.0 16261730.0 10219350.0 False True 10668142.999998404 11204078.35861533 11650433.902576411 9828896.87946813 7971449.936899427 9686071.2635063 10431297.94931255 10131651.20442017 12254244.537518073 9567142.333774287 1.1150814556544562 1.171099787975587 1.2177548421588344 1.0273597419753846 0.8332111783012064 1.0124309773580107 1.0903253641881743 1.0590049620828816 1.280867798345351 1.0 23.189656631281665 3.7279966703876624 24.310545100841033 1.039932404681927 1.1682908036094006 0.22602540786894143 0.10558482909364919 726.5054097830606 1671889.5462957579 0.029494106290891765 0.046257207699331615 5345.60261059697 -3.7279966703876624 0.1283583989274737 MILENIPNPDHEVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 MILENIPNPDHEVNR 15 0 Q5VZE5 Q5VZE5 NAA35 N-alpha-acetyltransferase 35, NatC auxiliary subunit 0 88.561 0.006737699999999999 168230000.0 158690.0 159680.0 149740.0 203400.0 204990.0 197550.0 187050.0 181700.0 224250.0 220210.0 False True 157835.63067211641 164994.85227140153 170822.0904365879 229150.41914492796 231094.2614290785 183893.83348267936 178001.6768996094 195259.3766539047 168986.59229604903 206156.009268734 0.7656125631844682 0.8003397662608177 0.8286059234582549 1.1115388775605357 1.120967864331504 0.8920129669514758 0.863431910284875 0.9471437546085546 0.8197024811232503 1.0 17.653376989583943 3.9758951925172195 22.468964383135166 0.9600188482808795 0.7908501914625409 0.4118091752214812 0.09219364125042513 212.84920848419674 198406.46885928593 0.025683938345131645 0.04673870985681261 9460.08835256426 -3.9758951925172195 -0.1691686568183386 MILIQDGSQNTNVDKPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MILIQDGSQNTNVDKPLR 18 1 A0A087WTP3;Q92945;M0R0I5;M0QYH3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ; 194.19 7.8044e-15 1807750000.0 737240.0 796580.0 711550.0 705350.0 715780.0 777660.0 801920.0 684210.0 938710.0 816510.0 False True 733270.7817550644 823093.6837572212 811730.0550965277 794647.2376788344 806930.3402395535 723902.194614734 763128.0659681087 735269.2245479822 707377.4985695607 764399.6327506197 0.9592767321413525 1.0767845096882067 1.0619184263283774 1.0395704074573813 1.0556393614893445 0.9470205944629259 0.9983365157071893 0.961891127422688 0.925402719025557 1.0 19.54396755962164 2.7413863715997353 24.992885973930765 0.9666769692172292 1.042102315949114 0.5013137181610342 0.03587598928452116 195.4844334920637 1729001.9197825603 0.010791925888636832 0.010983819423400454 551.2979424347841 -2.7413863715997353 0.07542534673188483 MIMATNRPDTLDPALLRPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MIMATNRPDTLDPALLRPGR 20 2 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 ; 162.76 1.1599e-11 2573400000.0 1858040.0 2293000.0 2190120.0 2122860.0 2078750.0 2163620.0 2258020.0 2033550.0 2281610.0 2120620.0 False True 1848036.5190876506 2369321.118852231 2498469.8591357 2391613.8583382578 2343466.4907834386 2014054.0420136405 2148790.946125933 2185303.8271576655 1719337.787507639 1985280.2160458774 0.9308693574594835 1.1934441796691329 1.258497333999506 1.2046731937427368 1.1804210165610616 1.0144935841979388 1.0823615370558233 1.1007533392490956 0.8660428757669679 1.0 20.92091122292312 2.7388257556021065 24.960628117487097 1.0314655342939039 1.1644627778816456 0.31625792786126206 0.10107118130257084 31.69915654240968 2984315.276536235 0.032217040031984154 0.03226894089128858 548.0570334425222 -2.7388257556021065 0.1329972435877418 MIMDTAGNDPYCFVEFHEHR ddPTM_BT-474_Trastuzumab_2h_R1 5 MIMDTAGNDPYCFVEFHEHR 20 0 C9JTN7;P31483-2;H7BY49;F8W8I6;P31483-3;P31483;E5RGV5;E5RG67 C9JTN7 TIA1 Nucleolysin TIA-1 isoform p40 0 ;;;; 172.97 3.2217e-12 867996000.0 194972.2 230553.0 162180.0 232821.0 184228.7 221084.6 178692.0 46505.2 227573.0 141993.4 False True 193922.49133864793 238226.81723276828 185013.53430616955 262296.11472832476 207689.1329359446 205801.54197916898 170047.98529027027 49975.654172620634 171490.68347196773 132931.25964533424 1.4588178270185708 1.7921053172020387 1.3917985491132245 1.9731710617061853 1.5623799359914836 1.5481801837149176 1.279217437222553 0.37595110665435366 1.2900704012698858 1.0 17.020320878015 2.00870901704686 4.4454299384240565 0.8165000006268153 1.62351241997857 0.601413110861416 0.26476256822884836 0.11309267126530458 5.550603288899433 0.10707507304489207 0.07029369152184495 102.02556700785485 -2.00870901704686 0.8070124193517547 MIPCDFLIPVQTQHPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MIPCDFLIPVQTQHPIR 17 0 P06744;A0A2U3TZU2;P06744-2;K7EQ48;K7ESF4 P06744;K7ESF4 GPI Glucose-6-phosphate isomerase 0 ; 153.74 1.6392e-07 2818900000.0 933520.0 957580.0 1070560.0 1066200.0 908180.0 1139190.0 1121210.0 875340.0 1093620.0 983700.0 False True 928494.0320438234 989452.4714306663 1221285.542525669 1201180.81068005 1023831.3397954074 1060440.4766648128 1066972.7888618608 940662.3156864559 824112.004757212 920919.4238120585 1.008225049918494 1.074418071599491 1.326158956958768 1.3043278050406149 1.1117490991311214 1.15150191129124 1.1585951618277615 1.0214382402671816 0.8948795990705447 1.0 19.812715407135464 1.6220516997003351 2.901407942167018 0.9475395768083058 1.169546613489573 0.47348520025546936 0.09353995559713528 0.19916803362993496 3.9211721153581354 0.06617607636959077 0.027072015635511575 41.884342251077435 -1.6220516997003351 0.2220070366812671 MIPCDFLIPVQTQHPIRK ddPTM_BT-474_Trastuzumab_2h_R1 2 MIPCDFLIPVQTQHPIRK 18 1 P06744;A0A2U3TZU2;P06744-2;K7EQ48;K7ESF4 P06744;K7ESF4 GPI Glucose-6-phosphate isomerase 0 ; 147.64 4.8772e-08 3508800000.0 3035900.0 3494800.0 3433100.0 3545300.0 3176500.0 4348200.0 4343600.0 3471000.0 5011900.0 4356300.0 False True 3019555.0517202024 3611122.305348788 3916450.6389598595 3994134.616492205 3581008.4464094243 4047619.1685618185 4133483.473836638 3730023.6453808704 3776784.4010192556 4078277.204383932 0.74039965907034 0.8854528822776007 0.9603198710352211 0.9793681047964865 0.8780689165905716 0.992482601283415 1.0135366643035844 0.9146076783037927 0.9260734893055853 1.0 21.95952840936681 4.684341954320873 2.194187733506705 0.9551557471849005 0.6983986797281052 0.7328582820809957 0.040039442016888985 0.2835619432276714 1.713816038222785 0.010150850414270487 0.1357293843010076 48343.930213767366 -4.684341954320873 -0.2567570674567953 MIREMSSLDYMIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 MIREMSSLDYMIVK 14 1 C9JRG7 C9JRG7 GSAP 0 61.375 0.059926 113680000.0 103380.0 212400.0 178630.0 206270.0 184660.0 172230.0 160430.0 153230.0 86620.0 220940.0 False True 102823.41356659784 219469.6056014886 203779.55132020646 232383.76085066065 208175.35643442936 160324.14548581062 152669.3879978849 164664.8006861742 65273.66164853406 206839.42004374936 0.49711710439358847 1.0610627585160886 0.9852065494918923 1.1234984163149766 1.0064588094010196 0.775114073767466 0.7381058599255077 0.7960997021329171 0.3155765068125205 1.0 17.658151639209372 2.580643999767677 3.785967107535671 0.7112668186703069 0.9542726708534109 0.18059684817663846 0.22388262430558184 0.38329662794106345 9.911906976352542 0.07409138808886417 0.06841505352220054 380.753583793615 -2.580643999767677 0.243005852183104 MIS(ph)TGSELNEDYPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MISTGSELNEDYPK 14 0 Q86W68;Q86T82-2;Q86T82 Q86W68 USP37 Ubiquitin carboxyl-terminal hydrolase 37 1 MIS(0.889)T(0.096)GS(0.015)ELNEDYPK 74.296 0.017812 0.0 79061.0 40791.0 43591.0 45526.0 41712.0 57878.0 48956.0 51481.0 77807.0 54247.0 True False 78635.34436050295 42148.703776319766 49728.23390023576 51289.58693211406 47023.775953606186 53877.030090157044 46587.81124991864 55322.77363522112 58632.50741038432 50784.910016806694 1.5483997969963808 0.8299454259615923 0.9791931084209613 1.0099375368616454 0.9259399285741413 1.0608865915549923 0.9173553962092466 1.089354566482695 1.1545261651734846 1.0 15.632112264776174 4.749680461019945 24.90572811064314 0.9993174373861075 1.5484001318407177 0.7801009370423899 0.0879172219166157 712.6327554738957 1596090.8859446475 0.020884885088880596 0.3183607667262477 56192.77259107591 -4.749680461019945 0.5490826944546102 MISEFTWPNHDLPSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MISEFTWPNHDLPSDK 16 0 J3QRN6;O94832;K7EIG7 J3QRN6 MYO1D Unconventional myosin-Id 0 79.013 0.007370199999999999 0.0 195900.0 214800.0 156280.0 171100.0 157060.0 219920.0 177530.0 149200.0 227660.0 198280.0 False True 194845.29616653605 221949.4881506578 178282.86558988874 192761.24245672184 177060.66003244618 204717.44803599516 168942.19566954105 160334.06162224893 171556.24348770804 185625.60064395124 1.0496682326715758 1.19568360926885 0.9604433061571792 1.0384410436276916 0.9538590550991213 1.1028513703164469 0.9101233616670652 0.8637497256091629 0.9242057285878921 1.0 17.50203616860421 3.3785270184507037 0.5692239470136145 0.9147813149540358 1.1233600853341896 0.3362046439422488 0.07681692499805064 1.1510133680904187 0.7273587232250345 0.054777635187918984 0.13285883065604764 2390.710662283749 -3.3785270184507037 0.20857877038015382 MISTPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 MISTPSPK 8 0 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 MIST(0.001)PS(0.999)PK;MIST(0.002)PS(0.998)PK;MIS(0.001)T(0.007)PS(0.993)PK;MISTPS(1)PK;MIS(0.001)T(0.006)PS(0.992)PK;MIST(0.003)PS(0.997)PK 133.44 0.00096426 3650480000.0 5654640.0 4453650.0 3843070.0 3717010.0 3586660.0 5322120.0 5249320.0 4698700.0 7695700.0 5228130.0 True False 5624196.046529562 4601887.047961725 4384140.851436738 4187583.0848863837 4043399.8912006365 4954214.371322903 4995390.3372502485 5049340.853515148 5799197.852096776 4894466.267372719 1.1490928201960113 0.9402224464470471 0.8957342051087591 0.8555750221023016 0.8261166121737472 1.0122072766847887 1.0206200358454414 1.0316427936534873 1.1848478537394649 1.0 22.22272011446524 2.2234572077690573 1.9093492279111497 1.07041757002375 0.9289615839920347 0.2795041174851175 0.09406482998057268 0.44692531093501386 3.265236193910818 0.04872371238438171 0.03094331145700404 167.285079768321 -2.2234572077690573 -0.14145598603171528 MITNSLNHDS(ph)PPS(ph)TPPRRPDTSTSK ddPTM_BT-474_Trastuzumab_2h_R1 3 MITNSLNHDSPPSTPPRRPDTSTSK 25 2 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;Q8N9M1-3 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 2 MITNSLNHDS(0.827)PPS(0.625)T(0.549)PPRRPDTSTSK;MITNSLNHDS(1)PPS(0.529)T(0.468)PPRRPDT(0.001)S(0.001)T(0.001)S(0.001)K;MIT(0.001)NS(0.001)LNHDS(0.995)PPS(0.579)T(0.421)PPRRPDTSTSK 167.07 7.030000000000001e-12 994690000.0 496207.0 522674.0 541398.0 532255.0 533913.0 663337.0 672904.0 567615.0 784373.0 747982.0 True False 493535.476645781 540070.8881268945 617622.1324842254 599638.4284266661 601903.6557997162 617482.0745173385 640353.0627770902 609973.3135905671 591074.7842097157 700245.1483803925 0.7048038501763084 0.7712597357882915 0.8820084422044665 0.8563264305558972 0.8595613367573746 0.8818084294414922 0.9144698313985787 0.8710853834566131 0.8440969360185093 1.0 19.417500557118178 5.872526096428797 0.6348530194518154 0.8933800670723395 8.050628468157358e-12 0.6852616218365706 0.041928484435735665 6.760861089202381 0.6892688634402374 0.016155286870158037 6.081246363961979 745634.6753085391 -5.872526096428797 -0.8933800670642889 MITNSLNHDS(ph)PPSTPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 MITNSLNHDSPPSTPPR 17 0 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;Q8N9M1-3 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 MITNSLNHDS(0.999)PPS(0.001)TPPR;MITNSLNHDS(0.957)PPS(0.034)T(0.009)PPR;MITNSLNHDS(1)PPSTPPR;MITNSLNHDS(1)PPSTPPR 209.01 3.0004e-12 1929460000.0 705986.0 1040990.0 1045510.0 1157020.0 1083880.0 1045900.0 1047000.0 936430.0 1049220.0 1036520.0 True False 702185.0498184185 1075638.7228582562 1192708.7202641708 1303498.6133680665 1221905.6933399192 973599.3947837742 996352.6100715916 1006311.1616951913 790653.7898276937 970368.4061905813 0.723627279431961 1.1084848970721741 1.2291297950913724 1.3433028167984873 1.2592183396992582 1.0033296514731729 1.026777668888683 1.0370403191976458 0.8147975395567533 1.0 19.888173053569826 2.6014774442212327 7.386730426225676 0.985699110336034 1.1482127386968615 0.17984239030427696 0.16509297643164447 0.4888233480045252 27.351481531512984 0.056416349728762354 0.053089354316102864 399.463813977216 -2.6014774442212327 0.1625136283608275 MIVDPVEPHGEMK ddPTM_BT-474_Trastuzumab_2h_R1 8 MIVDPVEPHGEMK 13 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;;;;;; 206.18 6.3927e-08 7432170000.0 9864270.0 9483430.0 8679150.0 8626590.0 8194700.0 9731200.0 10361970.0 9584130.0 13368330.0 10121480.0 False True 9811161.866343416 9799080.23469551 9901098.879475841 9718715.409495797 9238246.471207729 9058505.048780816 9860721.924530588 10299346.447826026 10073884.197944427 9475518.480965009 1.0354221656633005 1.0341471291919793 1.044913679326969 1.0256658175507056 0.9749594694755831 0.9559904365104754 1.0406524924561542 1.0869427850851616 1.063148599011384 1.0 23.175773456085672 2.006152257000422 24.98139059664088 1.0607174943655944 1.0120677118297163 0.20031571881830135 0.03346441388695631 199.58647829150638 810420.549013377 0.013329737559566983 0.009820360829102853 101.42669098721625 -2.006152257000422 -0.04864978253587804 MIWWANKDPLPPLDPQAIKPILK ddPTM_BT-474_Trastuzumab_2h_R1 1 MIWWANKDPLPPLDPQAIKPILK 23 2 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 70.99 0.012697 67914000.0 216100.0 186940.0 177660.0 161070.0 180340.0 258680.0 224350.0 196450.0 330450.0 239570.0 False True 214936.5416109673 193162.18489238355 202672.98375159755 181461.44548512067 203305.23004107544 240798.0604672209 213497.3333997723 211110.09655288723 249015.02530314063 224280.4374938042 0.958338337541833 0.8612529342766228 0.9036587676408311 0.8090828050490743 0.9064777664645486 1.0736471854522445 0.9519213346713318 0.9412773530848815 1.1102841963647396 1.0 17.77494426355702 2.9194636401855356 7.245330563944859 1.0002373524490074 0.8799255894397795 0.5303118443439584 0.059501758972031346 0.23171507671862016 18.203871409666743 0.018153134873770876 0.019328831753776664 830.7371651733476 -2.9194636401855356 -0.12031176300922786 MKDTDSEEEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MKDTDSEEEIR 11 1 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 ; 177.44 6.5094e-05 1148610000.0 1128480.0 968330.0 904570.0 738880.0 762460.0 1110460.0 881880.0 1031450.0 1437590.0 1116680.0 False True 1122404.3890659134 1000560.278682154 1031925.5933366112 832422.1322409267 859554.7615455164 1033696.5139416673 839220.0952912468 1108422.036596973 1083315.2072190722 1045412.5263621522 1.0736473504595159 0.9570961256451787 0.9870989368450815 0.7962618691184103 0.8222158620354518 0.9887929289873209 0.8027645299139298 1.0602723887899856 1.0362561954263303 1.0 19.99564092052655 1.6389288796265704 11.347998462778563 1.036018438645719 0.9171228536377396 0.26599825707309155 0.08648537095099089 0.1431625017199075 37.60897514284184 0.042160388590893924 0.022692642476859988 43.54405597905608 -1.6389288796265704 -0.11889558500797937 MKDTDSEEEIREAFR ddPTM_BT-474_Trastuzumab_2h_R1 10 MKDTDSEEEIREAFR 15 2 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 ;;;;;;;;; 239.58 4.6531e-18 9571180000.0 8743490.0 11908150.0 11476850.0 12379420.0 11390950.0 13837300.0 15152270.0 11999940.0 20284850.0 15103350.0 False True 8696416.021333063 12304505.574121313 13092690.721431501 13946653.302709486 12841519.96304973 12880760.02050055 14419296.812807526 12895436.457260631 15285920.520564126 14139441.2723715 0.6150466523967874 0.8702257279546359 0.925969454465973 0.9863652342445297 0.9082056154610642 0.9109808352660712 1.0197925459036958 0.9120188138168049 1.081083773121421 1.0 23.753221776614517 5.198801287761762 1.2011777110704096 0.9664087960678975 1.4155547698911034e-14 0.807123275930289 0.05241072097394469 1.5959049252636583 0.9180103887366682 0.014031696747970506 2.511153813555919 158052.4701819184 -5.198801287761762 -0.9664087960678833 MKEEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 MKEEGK 6 1 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 ;; 82.671 0.053469 939340000.0 1079760.0 850080.0 768230.0 680550.0 760110.0 642900.0 1024040.0 984000.0 1559860.0 1187540.0 False True 1073946.6921326143 878374.398915789 876390.106425136 766707.5602216363 856905.5029750578 598457.8362238148 974503.2729873084 1057431.076650757 1175453.4040531327 1111750.1804958554 0.9659964180564556 0.7900825332216472 0.7882976965510852 0.6896401490842795 0.7707716337791521 0.5383024412524895 0.8765487877435442 0.9511409084540277 1.0572999444253428 1.0 20.084401208239324 1.789677506425479 2.741028432589876 1.0136310622443896 0.7564424949774234 0.5247073719819633 0.10361666179991905 0.20184110614328504 2.9258614525565703 0.061090476917355946 0.029179141920566698 61.61373075466953 -1.789677506425479 -0.25718856726696615 MKEEMDR ddPTM_BT-474_Trastuzumab_2h_R1 4 MKEEMDR 7 1 F5H442;Q99816;Q99816-2 F5H442 TSG101 Tumor susceptibility gene 101 protein 0 ;;; 98.033 0.010543 1387580000.0 2332830.0 2393720.0 2033790.0 1997840.0 2107340.0 2478840.0 2436790.0 2152450.0 3173290.0 2569150.0 False True 2320270.302481779 2473393.523165706 2320129.9539804184 2250766.339156852 2375697.257817234 2307483.625361708 2318913.158258219 2313076.7489196337 2391275.199407486 2405184.647440026 0.9646952906303363 1.0283591015759554 0.9646369381452122 0.9357977324329215 0.9877400724080884 0.959378993133726 0.9641310328196088 0.9617044376952814 0.9942168897313789 1.0 21.19771622411796 1.1340587975666492 5.790145874983333 0.9993166589003964 0.9708004961125535 0.17778543614967102 0.022726513845537172 0.36462468904758416 16.41634010106295 0.021905783689807598 0.005532900338929854 13.616290160387969 -1.1340587975666492 -0.02851616278784297 MKEGENNKPR ddPTM_BT-474_Trastuzumab_2h_R1 6 MKEGENNKPR 10 2 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 0 ;;;;; 182.28 1.0095e-06 1841055000.0 1793530.0 1882950.0 1649940.0 1762320.0 2058080.0 2306910.0 2202030.0 2475920.0 3529140.0 2547010.0 False True 1783873.8337599142 1945622.8524826898 1882237.2104644324 1985429.531305261 2320164.2888041297 2147438.7415820197 2095509.396328507 2660685.7228670125 2659430.7350531872 2384457.641195033 0.748125612693157 0.815960333649538 0.7893774994975797 0.8326545613576978 0.9730364879291036 0.900598402119559 0.8788201392742241 1.115845245853703 1.1153189258251381 1.0 21.18522972346317 2.643665930242972 0.6235502398424845 1.0834459487078318 0.7693638525088836 0.7258313424887728 0.06471521660608438 0.42218417129747005 0.3452960241032002 0.054575883300139974 0.053995796687647674 440.2161084194628 -2.643665930242972 -0.3140820961989482 MKEIAEAYLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 MKEIAEAYLGK 11 1 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;; 131.26 0.00018885 12687060000.0 7992320.0 8408620.0 8524910.0 7468800.0 7164660.0 8424910.0 9673380.0 8802100.0 13993100.0 9530000.0 False True 7949290.237150224 8688495.833581872 9725143.228153942 8414349.314206691 8077036.982733121 7842515.801804926 9205441.653499827 9458957.39815814 10544688.002933519 8921787.240956515 0.8909975123210819 0.9738514939805232 1.0900442888292075 0.9431237359684649 0.9053160274495823 0.8790296820577533 1.0317934517919418 1.0602088060042143 1.1819031005947873 1.0 23.088901313705914 1.8974305969068133 2.8195327529488363 1.090003811156757 0.9530904919904066 0.41784513571258 0.07036100864838943 0.27099498892908286 3.8424090469993812 0.03902622597568429 0.02044445833197438 78.96426492663858 -1.8974305969068133 -0.1369133191663503 MKEIAEAYLGYPVTNAVITVPAYFNDSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 MKEIAEAYLGYPVTNAVITVPAYFNDSQR 29 1 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 ; 217.07 2.3231999999999996e-34 1016200000.0 667110.0 786010.0 745560.0 764230.0 776370.0 713120.0 772580.0 715910.0 1108500.0 919850.0 False True 663518.3538828886 812171.8676969212 850528.3674763094 860981.439641732 875236.1175944875 663823.6929039155 735207.3538577936 769334.83951732 835325.0281389983 861144.3854767935 0.7705076698787457 0.9431308865205486 0.9876721973927679 0.9998107798903302 1.0163639598136516 0.7708622434278236 0.8537561949622747 0.8933865824270097 0.9700173887524103 1.0 19.715895624657655 2.7773655370588255 24.999868982790538 0.8876758124172794 0.9490594391077115 0.058190197747367556 0.08645106632354183 1316.9125175644967 848411.6771716183 0.026781838534993146 0.028405852277791598 598.9154782654201 -2.7773655370588255 0.06138362669043207 MKENQK ddPTM_BT-474_Trastuzumab_2h_R1 2 MKENQK 6 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 81.635 0.055961 845970000.0 2853200.0 2766880.0 2026000.0 2372680.0 2904890.0 3086170.0 3472180.0 3491010.0 5577500.0 4422300.0 False True 2837838.6882203217 2858973.9281857223 2311243.189692315 2673061.044723636 3274810.522868023 2872830.3319627466 3304217.3883843184 3751526.8931895923 4202999.859670958 4140065.02787849 0.6854575155488625 0.6905625657891556 0.5582625331072818 0.6456567775442414 0.7910046100281055 0.6939094706526585 0.7981076060724369 0.9061516831082246 1.0152014114195491 1.0 21.98122199759492 1.841061307079519 0.9355781267483844 1.0264045666206678 0.6565118991138004 0.867997395218807 0.052853351749920605 0.18674274386229472 0.30265554294003505 0.046976613928381934 0.020595919712831656 69.3523700218625 -1.841061307079519 -0.36989266750686745 MKETAEAYLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 MKETAEAYLGK 11 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 127.02 0.0002694 4471200000.0 6735400.0 7369300.0 7463700.0 5543500.0 5976700.0 7745200.0 7987300.0 7876500.0 13907200.0 7525300.0 False True 6699137.354773297 7614582.695664073 8514524.084356626 6245306.5316121355 6737797.318323693 7209792.554239682 7600923.784550927 8464284.426056584 10479956.906932479 7045028.911266532 0.9509027484699063 1.0808447760216713 1.2085861096666406 0.8864841592948658 0.9563903006201283 1.0233872202723906 1.0789059747356604 1.2014548886407486 1.4875676223518048 1.0 22.74817419637793 1.7183570224440607 3.026392784539413 1.2682707288971695 1.023814535816385 0.31724888136590956 0.13723400501655722 0.23651975770819486 4.722967552056431 0.0787012242214996 0.036103901611134644 52.282581418283264 -1.7183570224440607 -0.24445619308078448 MKETAEAYLGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 MKETAEAYLGKK 12 2 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 105.03 0.0011665999999999998 1193100000.0 1093260.0 1070550.0 1064560.0 916670.0 1004230.0 1248880.0 1314920.0 1315270.0 1900270.0 1402200.0 False True 1087374.0096326056 1106182.6095888598 1214440.7946786021 1032720.3280117072 1132112.737962455 1162547.865147299 1251312.2961178015 1413422.1262057303 1431973.9208134357 1312710.395516183 0.8283426514688559 0.8426707165321773 0.9251399233423916 0.7867084252087618 0.8624238383648105 0.8856087901171551 0.9532279933120826 1.0767204488008533 1.0908528840059624 1.0 20.32411723952523 2.044766560942763 2.0770282594901612 1.0647532025828141 0.8515942370197052 0.8331495697579503 0.04036670671066118 0.11567977752409796 0.9451950105048131 0.02164541422294346 0.011850658361826914 110.85787792575742 -2.044766560942763 -0.21315896556310898 MKETIMNQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MKETIMNQEK 10 1 P20290-2;D6RDG3 P20290-2 BTF3 Transcription factor BTF3 0 ; 157.68 7.9748e-06 764000000.0 1188870.0 1075990.0 1163910.0 985870.0 849790.0 1243390.0 1330110.0 1177220.0 1908380.0 1366660.0 False True 1182469.2560158747 1111803.6767003092 1327778.4111129213 1110681.0409164706 958005.7194000535 1157437.3759252273 1265767.4977863664 1265070.1342020347 1438085.3199818681 1279438.5887435086 0.9242094668858909 0.868977758277693 1.0377820575326602 0.868100314222374 0.7487703808753159 0.9046447294214455 0.9893147736222587 0.9887697192597695 1.1239971442428986 1.0 20.287079471026313 1.9143352645007405 1.8337023317866172 1.0484902880615385 0.8910608746177214 0.4440140524221392 0.07449389033355165 0.3419029209276346 2.1394227442703952 0.04997647191776923 0.023492308232900123 82.09850797526958 -1.9143352645007405 -0.1574294134438171 MKETQK ddPTM_BT-474_Trastuzumab_2h_R1 4 MKETQK 6 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;; 105.95 0.029678 1561420000.0 1841910.0 1527290.0 1461910.0 1285190.0 1331420.0 1072890.0 1764930.0 1797360.0 2671320.0 2169220.0 False True 1831993.3612154392 1578124.9243836983 1667734.220850489 1447894.922226502 1500968.445055387 998723.6396113994 1679553.5932126602 1931488.1300091483 2013008.9798540953 2030778.5224373252 0.9021138154527528 0.7771034147483717 0.8212290027811043 0.7129752980097256 0.7391098677043009 0.49179348145396906 0.8270491216328566 0.9511072274346247 0.99124988649087 1.0 20.953601476607453 1.790207434056422 3.3575991400751986 0.9829848229915973 0.7402318311079259 0.5315935072606581 0.09994330855332381 0.18826701882189942 3.999275657312754 0.05646216036234821 0.02847683557059048 61.6889579292235 -1.790207434056422 -0.2427529918836714 MKEYGEQIDPSTHR ddPTM_BT-474_Trastuzumab_2h_R1 2 MKEYGEQIDPSTHR 14 1 Q9Y2B0;F8VXJ7;F8W031;F8W1K5 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ; 115.91 0.00023559 1183810000.0 944620.0 1339300.0 1256380.0 1424140.0 1356920.0 1315340.0 1516900.0 1316680.0 1817180.0 1520480.0 False True 939534.2708771483 1383877.7908760526 1433267.383349275 1604435.977979636 1529715.718905047 1224413.6417773098 1443521.7518792714 1414937.3475655667 1369360.337964477 1423441.6646515797 0.6600440988968248 0.9722054828392204 1.0069027898660676 1.127152603315401 1.0746599294460588 0.8601783073962594 1.0141067159451223 0.9940255246862577 0.9620066434543066 1.0 20.440951939227414 4.741775726352998 3.7209337923987817 1.005642797303658 0.6221190476693109 0.7116043163998272 0.06545423865406423 0.14923168219934507 3.894208682929597 0.016515859416158667 0.15868300677252886 55179.24150370036 -4.741775726352998 -0.383523749634347 MKFNPFVTSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MKFNPFVTSDR 11 1 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3KSS0;E5RHH1;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ; 99.5 0.004312600000000001 1308560000.0 290208.0 491690.0 442050.0 501370.0 424660.0 472010.0 499760.0 375510.0 694670.0 518170.0 False True 288645.55237314 508055.6044171186 504286.7976325206 564843.3905933752 478737.9338429807 439381.0596920257 475584.6995314025 403532.4630011435 523477.88660109765 485099.9469723434 0.5950228487441915 1.0473215006269294 1.0395523660225654 1.1643855954195315 0.9868851498148579 0.905753674957783 0.9803849753018353 0.83185427151603 1.079113469024853 1.0 18.887922496264448 4.743375072147276 24.92598629046976 0.9927218538628184 0.5950226791254662 0.6633684163662257 0.08705587857679496 328.9149897744513 1702840.1026206263 0.022911456925452656 0.1877419672416678 55382.820845544506 -4.743375072147276 -0.39769917473735217 MKGDYDVTVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MKGDYDVTVPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 101.6 0.0028876 884590000.0 1763500.0 1601600.0 1532000.0 1457400.0 1478400.0 2323900.0 2021600.0 1701700.0 2659400.0 2254000.0 False True 1754005.5119432698 1654908.2878123568 1747692.2836172895 1641906.6905694113 1666665.476836676 2163254.262872178 1923807.4847380402 1828689.495057513 2004026.5041342797 2110147.7902535135 0.8312240119127121 0.7842617922100783 0.8282321701302834 0.7781003293480938 0.7898335294498223 1.0251671815898187 0.9116932442475575 0.8666167855654385 0.9497090741182236 1.0 21.00891261508083 2.7633401241263185 24.998177209089366 0.9329800412867241 0.8014194183866373 0.7206726952493953 0.045504783705006775 470.8862469640565 475040.82788763713 0.014380735742351946 0.01524669394549075 579.8826622948495 -2.7633401241263185 -0.13156062290008674 MKGDYFR ddPTM_BT-474_Trastuzumab_2h_R1 5 MKGDYFR 7 1 P27348;E9PG15;P31946-2;P31946 P27348;P31946-2 YWHAQ;YWHAB 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;; 119.29 0.0043911 21750600000.0 6363910.0 8864450.0 10230970.0 6917710.0 3898020.0 6509460.0 9308620.0 5680180.0 17102990.0 7892110.0 False True 6329647.415656862 9159497.859576814 11671401.64681459 7793491.376711211 4394409.741625338 6059476.351820622 8858326.488218362 6104063.874969599 12888187.282824516 7388428.78302469 0.8566973576573635 1.2397084858720233 1.5796865598312675 1.054823915284556 0.5947691817402002 0.8201305757649844 1.1989459123664885 0.8261653531795572 1.7443745701976332 1.0 22.81683616401389 3.4971146129596127 24.864093002300816 0.9952796961294011 1.2418746950377262 0.059722361915352296 0.3293651494073813 1694.1153772997288 2106827.0728856656 0.08732068460161434 0.13330149615724962 3141.3376026255755 -3.4971146129596127 0.24659499890832504 MKGDYYR ddPTM_BT-474_Trastuzumab_2h_R1 5 MKGDYYR 7 1 B7Z2E6;H0YB80;P63104-2;P63104;E7EX29;B0AZS6;E7ESK7;P31947-2;P31947;P61981;Q04917;A2IDB2 B7Z2E6;P63104;P31947-2;P61981;Q04917 YWHAZ;SFN;YWHAG;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta 0 ;;;; 128.61 0.003412 12743300000.0 8416560.0 10471840.0 13826080.0 7629490.0 3448260.0 6446860.0 9886460.0 5193920.0 19300100.0 7524640.0 False True 8371246.176127727 10820388.86403905 15772671.885558298 8595382.651730768 3887375.471561708 6001203.742476074 9408214.15985518 5581516.684591361 14543848.963090176 7044411.033031582 1.1883528852695493 1.536024631910564 2.23903344248362 1.2201705169426664 0.551838252102783 0.8519099346043468 1.3355572404477267 0.7923326248879234 2.0645940299186645 1.0 22.748047660494386 3.4944678779751843 24.846064018837385 1.0581992585631694 1.6571218550144498 0.23049137595083535 0.45120027046084454 903.9433024477321 1294741.4232960558 0.11870389270314455 0.17939881176082842 3122.251464426141 -3.4944678779751843 0.5989225964512803 MKLDYILGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 MKLDYILGLK 10 1 P46781;B5MCT8;C9JM19 P46781 RPS9 40S ribosomal protein S9 0 129.82 0.0036504 0.0 1671100.0 1705100.0 1737900.0 1464600.0 1198500.0 1690700.0 1832700.0 1563200.0 2726800.0 1825000.0 False True 1662102.9832766645 1761853.222745283 1982581.2139024034 1650018.2098311805 1351121.8709339534 1573825.888479708 1744045.2994061166 1679853.9217687636 2054816.6772480085 1708526.9375388904 0.9728280817573184 1.031211849245531 1.1604038369791725 0.9657548696352479 0.7908109853276448 0.9211595403621687 1.0207888802259037 0.9832176975731913 1.2026832191524846 1.0 20.70432156356335 -0.29939757283103186 7.034104597558847 1.0000000470553136 1.0001429297834454 0.0 0.10971371932538182 0.0 0.0 0.10913075875163473 0.025722366516438038 0.5018829328002108 0.29939757283103186 0.00014288272813178793 MKLPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MKLPGR 6 1 J3QQ67;Q07020;F8VYV2;G3V203;H0YHA7;Q07020-2;F8VUA6;A0A075B7A0 J3QQ67 RPL18 60S ribosomal protein L18 0 ; 106.84 0.028984 1501040000.0 1991100.0 2272100.0 2057590.0 1989090.0 2001200.0 2322500.0 2370500.0 2027080.0 2900800.0 2381300.0 False True 1980380.1388320064 2347725.474986547 2347280.787107109 2240908.5900540072 2256040.957958301 2161951.041576936 2255829.858810611 2178351.002903672 2185936.708728557 2229323.3952665017 0.888332371623124 1.0531112174982988 1.0529117453712928 1.0051967313545016 1.0119846060686073 0.9697790128464013 1.0118899140431532 0.9771354876232587 0.9805381818402538 1.0 21.088174484667885 1.7298749564364448 11.65691701189133 0.9843151270640659 1.0027897484986892 0.012790981381001765 0.04440741303787658 0.37703646812161173 230.88120295314272 0.02044063747920793 0.011169727816706335 53.6877194582951 -1.7298749564364448 0.018474621434623306 MKPAGS(ph)VNDMALDAFDLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MKPAGSVNDMALDAFDLDR 19 1 H0YJN0;Q9UI08-5;Q9UI08;Q9UI08-2 H0YJN0 EVL Ena/VASP-like protein 1 MKPAGS(1)VNDMALDAFDLDR 195.09 1.0166e-15 96458000.0 234830.0 165010.0 155550.0 155490.0 149320.0 196930.0 158730.0 166440.0 272150.0 209390.0 True False 233565.70137206584 170502.25809934858 177450.08793516245 175175.018057251 168335.01691102024 183316.6926233565 151051.62349251527 178860.59796519484 205082.27912316486 196026.55093220194 1.1915003363643697 0.8697916546943621 0.9052349648111476 0.893629037618671 0.8587357993624082 0.9351625672726278 0.7705671643672302 0.9124304698247528 1.0461964369005041 1.0 17.580689548695595 4.742206551703322 24.909221197242413 0.9001451024532647 1.1915004531218862 0.5740373393929368 0.0722315861482964 228.19464334340455 1558968.6803231086 0.01650735753254993 0.1232169524595389 55234.007134633015 -4.742206551703322 0.2913553506686215 MKPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MKPKPR 6 2 E7ETZ8;Q49MG5;A0A0C4DG83;A2VCS9;Q49MG5-2;A8MSM7 E7ETZ8 MAP9 Microtubule-associated protein 9 0 72.054 0.048713 2138800000.0 996510.0 1107900.0 918640.0 909650.0 1004300.0 1175100.0 1390200.0 1028000.0 1892000.0 1356300.0 False True 991144.9008826696 1144775.7817603077 1047976.5270379788 1024811.5967314839 1132191.6520475324 1093868.1028878607 1322950.7149202747 1104714.580078228 1425741.9515011115 1269739.77281315 0.7805890010728385 0.9015829906816415 0.8253474841668955 0.8071036433402258 0.8916721963738481 0.861489988979679 1.0419069664874985 0.8700322725425043 1.122861535905372 1.0 20.276101423061384 2.178523733142588 0.8038040149815671 1.0241817092350354 0.830324550619061 0.5600740394586319 0.0694589189420617 0.4957782128393088 0.6063105882178149 0.053870942407853104 0.030985901026236003 150.84250400667267 -2.178523733142588 -0.1938571586159744 MKPPAACAGDMADAAS(ph)PCSVVNDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MKPPAACAGDMADAASPCSVVNDLR 25 1 P52888 P52888 THOP1 Thimet oligopeptidase 1 MKPPAACAGDMADAAS(1)PCSVVNDLR 155.61 3.2804e-08 254240000.0 175510.0 201460.0 225410.0 206370.0 119360.0 167360.0 188010.0 154030.0 294280.0 205660.0 True False 174565.07366099395 208165.47431485818 257145.76870115686 232496.420840407 134559.78849785263 155790.79712306397 178915.2380320532 165524.5007484916 221758.63714997217 192534.60272561552 0.906668573803171 1.081184739615447 1.3355820982871316 1.2075565511293664 0.698886260406999 0.8091573925809284 0.929262768869804 0.85971299914532 1.151785881657877 1.0 17.55475822774777 3.2592705795980703 24.982959692055832 0.8953976797034296 1.14355310607844 0.3460188532228723 0.1503751103026713 257.2680620834471 310347.0099285808 0.0428220268892596 0.057917805038484586 1816.6471405613802 -3.2592705795980703 0.24815542637501042 MKPWFEVGDENSGWSAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 MKPWFEVGDENSGWSAQK 18 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ; 223.5 4.6653e-19 3035100000.0 2849300.0 2503600.0 2416300.0 2230690.0 2455400.0 3131600.0 3084000.0 2790500.0 3567700.0 3004400.0 False True 2833959.685386989 2586930.812541843 2756494.0371438996 2513095.1252822015 2768080.6357039837 2915119.8629934634 2934815.1379759205 2998741.279871886 2688488.1397307194 2812656.6198037514 1.0075740015447474 0.9197464042810679 0.9800321936689981 0.8934951773308001 0.9841516437570407 1.036429346713806 1.0434317212104949 1.0661597504501343 0.9558536654639003 1.0 21.423502002835374 2.9424000913331434 4.612289843076047 1.029002214668952 0.9488411716139102 0.39225038750080476 0.04032097630344494 0.18522659788963924 8.126506587590596 0.012014321757673616 0.01311211839148943 875.7902204870768 -2.9424000913331434 -0.08016104305504168 MKQDAQVVLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 MKQDAQVVLYR 11 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 164.81 2.0369e-05 515880000.0 643050.0 604040.0 587730.0 534730.0 580160.0 677740.0 619220.0 544230.0 803530.0 660300.0 False True 639587.8902495715 624145.10625011 670477.2753592619 602426.7631728984 654039.9371222716 630889.429028354 589265.962949886 584843.2061439446 605510.7982503637 618159.0886887293 1.0346655124108877 1.0096836197524468 1.0846354726928187 0.9745497141371761 1.0580446831407988 1.0205939548128766 0.953259401556106 0.946104678950113 0.9795387778489258 1.0 19.237618650633962 2.3008778850725533 5.460138373162871 0.9627754244522984 1.0313341204116966 0.48200205572678234 0.03056455950776597 0.1461611166599526 8.497559631016085 0.010206606862502205 0.008378121442358766 199.929962749843 -2.3008778850725533 0.06855869595939823 MKQDVLNCT(ph)EGPIHSNGT(ph)S(ph)MIS(ph)LIIPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MKQDVLNCTEGPIHSNGTSMISLIIPPK 28 1 B7Z7P8 B7Z7P8 ETF1 4 MKQDVLNCT(0.992)EGPIHS(0.204)NGT(0.938)S(0.938)MIS(0.928)LIIPPK 40.937 0.052453 6070700000.0 734290.0 1778900.0 1881500.0 1726200.0 1866800.0 1663900.0 1663700.0 1406500.0 777280.0 1884200.0 True False 730336.664227289 1838109.6111322434 2146398.8457088275 1944736.7430087249 2104525.9146095146 1548878.5093992944 1583220.475048812 1511460.1720622864 585729.7590183846 1763948.7428552231 0.41403508304052333 1.0420425301910867 1.216814748389202 1.1024905065330122 1.1930765693355776 0.8780745561190149 0.8975433563257205 0.8568617303560392 0.33205599731332935 1.0 20.75037720873266 1.5317866260908304 3.686444555522974 0.6478797226379452 0.9854453202840133 0.15596251127367766 0.26276938149714935 0.29423659743252883 8.78229985136499 0.1682779921907606 0.06726313771626928 34.02409842929673 -1.5317866260908304 0.3375655976460681 MKQEPVKPEEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 MKQEPVKPEEGR 12 2 P61586 P61586 RHOA Transforming protein RhoA 0 150.22 3.8206e-05 438320000.0 558710.0 573970.0 515250.0 487500.0 561520.0 841610.0 741080.0 618890.0 1113700.0 734200.0 False True 555701.9674385167 593074.2444778081 587792.7213667148 549217.4500154993 633026.2436102062 783431.4816368413 705231.129199479 665074.7144597417 839243.5578154284 687342.7274197558 0.8084787185056707 0.8628508323702995 0.8551668591493711 0.7990445349981796 0.920976127857713 1.139797440758262 1.0260254470820913 0.9676027517689656 1.220997217743031 1.0 19.390670119120795 2.958939797543841 4.778868250544304 1.0560235555114184 0.8369398282849005 0.7203251307734223 0.0704135896465054 0.1160007820787568 6.187863860943756 0.021503215341529158 0.02366606436489494 909.7871480334059 -2.958939797543841 -0.2190837272265178 MKS(ph)LEQDALR ddPTM_BT-474_Trastuzumab_2h_R1 2 MKSLEQDALR 10 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 MKS(1)LEQDALR;MKS(1)LEQDALR 106.58 0.0014523 817760000.0 2461800.0 1864280.0 1450210.0 1809650.0 1311540.0 1610370.0 1498490.0 1329560.0 2082200.0 1774780.0 True False 2448545.942331691 1926331.432818942 1654386.9625487127 2038751.5044524067 1478556.844893381 1499048.912303229 1426002.313912299 1428778.5185688813 1569069.7100505366 1661512.0209343974 1.4736853609730027 1.159384589788051 0.9957117021749397 1.227045894802409 0.8898863362191467 0.9022197212032191 0.8582557910777842 0.859926681580894 0.9443625386279942 1.0 20.664065300199262 7.999999999999428 0.47701988895359304 0.8924265797575685 16.421848265969558 0.7585357123624373 0.09274177702977815 44.263147834056824 0.4997026721163049 0.05147242005540476 680.3647207977722 99999999.99986829 -7.999999999999428 15.52942168621199 MKSS(ph)CDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MKSSCDR 7 1 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 MKS(0.116)S(0.884)CDR 76.827 0.024045 112800000.0 126490.0 130940.0 112790.0 104470.0 123680.0 94630.0 129890.0 134100.0 192200.0 162350.0 True False 125808.9918943602 135298.25874509852 128669.85161174521 117695.89128844952 139429.9148912065 88088.4508350594 123606.72447201425 144107.2229460023 144834.88534805187 151988.68400517202 0.8277523601038551 0.890186395327263 0.8465752069237386 0.7743727242512637 0.9173703674311823 0.5795724294320611 0.8132626799229872 0.9481444219959064 0.9529320310657028 1.0 17.213604389307335 1.6995095524724482 4.32689572460973 0.9671212543593103 0.8056390041048735 0.4185720822706269 0.08671775677246651 0.1782454709587738 7.814234141418519 0.048103647792851076 0.023234931422815703 50.06215637695842 -1.6995095524724482 -0.16148225025443674 MKYNTEGRVS(ph)PSPSQESLSSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 MKYNTEGRVSPSPSQESLSSSK 22 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 MKY(0.002)NT(0.213)EGRVS(0.781)PS(0.005)PSQESLSSSK;MKYNT(0.008)EGRVS(0.959)PS(0.033)PSQESLSSSK 146.53 4.4252000000000005e-08 370260000.0 523530.0 528490.0 544220.0 586400.0 543060.0 719170.0 727700.0 634680.0 1115410.0 775570.0 True False 520711.37264965085 546080.4701710487 620841.4455549603 660638.1798750542 612215.4720311996 669455.470644083 692498.3709160421 682043.0444397372 840532.1512282534 726072.4586011166 0.7171617191662614 0.7521018924518243 0.8550681659942053 0.9098791340300513 0.843187845481319 0.9220229506210519 0.9537593152207429 0.9393594762619032 1.1576422453038089 1.0 19.469754003991508 4.613862991391938 0.284316627971083 1.0533017081636242 0.4658652495573765 0.7463418650689757 0.05995271885401044 3.8909710418661962 0.2753637461417726 0.07305043920728221 0.7996285026418943 41102.00345236776 -4.613862991391938 -0.5874364586062477 MLADDAEAGAEDEKEVEELKK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLADDAEAGAEDEKEVEELKK 21 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 0 66.874 0.012475 69769000.0 58414.0 45977.0 41439.0 29580.0 40809.0 52456.0 54954.0 48861.0 64555.0 47236.0 False True 58099.50551440549 47507.31665131656 47273.25100575506 33324.82496709426 46005.78425610652 48829.84018814193 52295.66507533357 52507.25593113065 48646.28524268197 44221.35803922581 1.313833588350437 1.0743070488512814 1.069014003681708 0.753591170527464 1.0403521351673068 1.1042139444208892 1.1825884005856533 1.1873732119342644 1.100063123333551 1.0 15.432455710591693 2.601860076846894 3.958050502735168 1.1407244471404683 1.0366513550809398 0.038145685816064256 0.13601015869645044 0.5748741924604801 15.575344198062659 0.04770911157537848 0.044423398599313234 399.8159143308251 -2.601860076846894 -0.10407309205952853 MLAEDELR ddPTM_BT-474_Trastuzumab_2h_R1 10 MLAEDELR 8 0 P61204;F5H423;P61204-2;P84077 P61204;P84077 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 0 ;;;;;;;;; 200.66 0.00027467 12811450000.0 13974720.0 16834760.0 15415720.0 16210810.0 14395410.0 15592290.0 16025030.0 14153180.0 16986160.0 15247610.0 False True 13899481.66025736 17395094.809772663 17586119.380159717 18263096.883868195 16228580.135220112 14514431.692602636 15249838.077340541 15209362.15999183 12800148.470882725 14274494.475664318 0.9737284696108648 1.2186137196962359 1.2319959498489548 1.2794216226013322 1.1368935105118567 1.0168088065988867 1.0683277157968027 1.0654921745860289 0.8967146607331621 1.0 23.766936318355437 2.843663104234745 3.9005413524122576 1.0224467292007857 1.1852811251054285 0.4458793966108989 0.08813278687888045 0.23138311660060695 6.286835801012463 0.028089652477450617 0.029882991616341864 697.6909734689908 -2.843663104234745 0.16283439590464277 MLAEDELRDAVLLVFANK ddPTM_BT-474_Trastuzumab_2h_R1 2 MLAEDELRDAVLLVFANK 18 1 P61204;F5H423;P61204-2;P84077 P61204;P84077 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 0 ; 236.02 7.545099999999999e-24 1272350000.0 307690.0 433930.0 401100.0 505280.0 486580.0 446410.0 546430.0 449240.0 619650.0 512420.0 False True 306033.4312275729 448373.0977337755 457571.39357630134 569248.3961924743 548543.0788143862 415550.7274361075 519997.0933346891 482764.5699944977 466945.560384601 479716.91689516633 0.6379458811006473 0.9346618431464645 0.9538362677259837 1.186633983801896 1.1434724511378043 0.8662415537180624 1.0839665540673966 1.0063530240272878 0.9733773063638773 1.0 18.871823790545797 4.813628430355842 1.7238143050366288 1.0340113146655365 0.451155907975024 0.6433684778995389 0.08736737549668516 0.7134700211105667 1.810268502555083 0.02309932242453858 0.7249028230321984 65107.11183125885 -4.813628430355842 -0.5828554066905125 MLAEEDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLAEEDKR 8 1 Q13439-5;Q13439-3;Q13439-4;Q13439;H0Y6I0 Q13439-5 GOLGA4 Golgin subfamily A member 4 0 ; 76.47800000000002 0.010936 315750000.0 297550.0 296720.0 323030.0 273110.0 307680.0 310930.0 321520.0 287440.0 336420.0 336840.0 False True 295948.0238609129 306596.1458289723 368509.81617290643 307685.6979974012 346861.22423776286 289436.14095049165 305966.849274325 308890.23239074514 253513.79879704263 315342.5828167673 0.9384968602000581 0.9722636983890083 1.1686015027885799 0.9757188364762801 1.099950476524478 0.917846674448884 0.9702681018887636 0.9795386009450828 0.8039313832358289 1.0 18.266560474367566 2.719456391055003 24.55072970890608 0.9399446025152493 1.0323154582184064 0.26658287109690326 0.07990085917704373 945.0263774319195 1214446.6108828653 0.025443483751927086 0.024021035585416066 524.1509666341567 -2.719456391055003 0.09237085570315717 MLAES(ph)DES(ph)GDEESVSQTDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLAESDESGDEESVSQTDK 19 0 P22059 P22059 OSBP Oxysterol-binding protein 1 2 MLAES(0.992)DES(0.992)GDEES(0.015)VS(0.001)QTDK 70.345 0.011425 251960000.0 123470.0 121750.0 114420.0 113440.0 116770.0 127680.0 130250.0 106670.0 132890.0 123590.0 True False 122805.2512388066 125802.37515057092 130529.34144353122 127801.49236873472 131639.96734998532 118853.7821263908 123949.30989668085 114630.25705928465 100141.040134769 115702.38038927765 1.0613891505570716 1.0872928865189473 1.1281474158471818 1.1045709858237136 1.1377464051049433 1.027237138307011 1.0712770945563663 0.9907337832948132 0.8655054442082097 1.0 16.82005902030382 1.663881889398629 2.19717193787305 0.9304048614349634 1.0934689867743967 0.6888451932860069 0.042940110422247865 0.14526634599054447 1.5214568754806448 0.029616306898277128 0.01170812304711615 46.1192131825023 -1.663881889398629 0.16306412533943337 MLAES(ph)DES(ph)GDEESVSQTDKTELQNTLR ddPTM_BT-474_Trastuzumab_2h_R1 13 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 2 MLAES(1)DES(0.997)GDEES(0.003)VSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR 274.13 4.445299999999998e-61 13218825000.0 9182739.0 8715450.0 7845730.0 7592162.0 7897001.0 9859329.0 9430055.0 9053258.0 12222168.0 10252670.0 True False 9133300.153522212 9005538.484649217 8950340.587692346 8553328.930758094 8902637.268157938 9177776.792594034 8973887.2133416 9728858.08347263 9210178.4650605 9598335.822847595 0.951550385618054 0.9382395709902854 0.9324887931496645 0.8911262419468594 0.9275188358138463 0.9561841721298733 0.9349419919211852 1.0135984261265731 0.9595599315390553 1.0 23.194352859715348 1.754789317681246 24.999999999435655 0.9907362241777963 0.9323733444886011 0.6217219538184309 0.02069078819088447 3.7939089088629565 5851.2957050061805 0.009742897838381533 0.005403008715533981 56.85770392670321 -1.754789317681246 -0.05836287968919518 MLAES(ph)DESGDEESVSQTDKTELQNTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 MLAES(0.811)DES(0.189)GDEESVSQTDKTELQNTLR 103.07 0.0014297 389290000.0 72794.0 73617.0 78240.0 80527.0 82363.0 96118.0 95822.0 87960.0 100180.0 109190.0 True False 72402.08519217379 76067.2973425837 89255.51192572877 90721.70994338067 92851.43984625215 89473.58889743451 91186.7237844127 94524.02185182978 75491.98134322489 102221.40071773782 0.708286960301947 0.7441425847081377 0.873158764202307 0.8875021209491049 0.9083366026517404 0.8752921430268441 0.892051205952509 0.9246989494189902 0.7385144481797856 1.0 16.641337739961028 4.268048870812851 3.258481020837617 0.8888384620450632 0.7140177187429697 0.5347993650754301 0.06073020003697023 0.16586797663564207 3.550410061814409 0.0142709680107347 0.04378243890297644 18537.402115910296 -4.268048870812851 -0.17482074330209352 MLAESDES(ph)GDEESVSQTDKTELQNTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 MLAESDES(1)GDEESVSQTDKTELQNTLR;MLAESDES(1)GDEESVSQTDKTELQNTLR 381.08 5.631199999999998e-128 911130000.0 275642.0 267190.0 248177.0 239006.0 296358.0 311005.0 336650.0 310483.0 373380.0 312684.0 True False 274157.97409870545 276083.2576302345 283118.1644068459 269264.13509416254 334097.43464851374 289505.9563770222 320364.9533721117 333652.8180607281 281365.5020356691 292728.2394177596 0.9365614149287728 0.9431384487515377 0.9671706596192147 0.9198433865818089 1.1413228710459846 0.9889922371440947 1.0944108228482565 1.1398039995197184 0.9611833234651664 1.0 18.159202403315575 3.254052027022637 24.999891676834647 1.066239015979246 0.9436036046086086 0.4621392343341918 0.058655093470482145 195.26402450156482 315113.3663674738 0.015950761204033284 0.021522965985683273 1794.9486427816812 -3.254052027022637 -0.12263541137063749 MLDAEDIVGTARPDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MLDAEDIVGTARPDEK 16 1 P12814-3;P12814;P12814-2;P12814-4;H9KV75;G3V2N5;G3V2W4 P12814-3 ACTN1 Alpha-actinin-1 0 ; 145.55 1.1032e-06 1123450000.0 655110.0 630820.0 560990.0 551640.0 541190.0 694610.0 661270.0 654640.0 981510.0 711580.0 False True 651582.9605495641 651816.4623612574 639972.5157875072 621477.5674390772 610107.3386155572 646593.2456360621 629281.8438032871 703492.5609945639 739630.0120601774 666166.3551857122 0.9781084791769729 0.9784589949451074 0.9606797323306687 0.9329164743929813 0.9158483220688516 0.9706182856620047 0.9446316808177103 1.0560313584111374 1.1102782455201976 1.0 19.345522966797255 1.692749769946603 5.036320553181171 1.0639493488895342 0.9538765631459405 0.6838566572644469 0.031294215952168775 0.08081480478575478 4.776049480363571 0.016346490177049044 0.008028573335755608 49.288973089571684 -1.692749769946603 -0.11007278574359369 MLDAEDIVNTARPDEK ddPTM_BT-474_Trastuzumab_2h_R1 7 MLDAEDIVNTARPDEK 16 1 O43707 O43707 ACTN4 Alpha-actinin-4 0 ;;;;;; 272.24 3.2718e-35 6775570000.0 6076080.0 5314600.0 5200750.0 4342370.0 4457280.0 5387520.0 5609010.0 5220990.0 7457090.0 5777650.0 False True 6043367.060395954 5491493.248256464 5932970.394270638 4892113.596766777 5024888.187631606 5015093.423257935 5337680.757801012 5610606.785450029 5619390.089386589 5408915.430504968 1.1172973839289173 1.0152669825979856 1.0968872541083055 0.9044537041892808 0.9290010635574848 0.9271902080357971 0.9868301374611609 1.037288687082732 1.038912543852062 1.0 22.366907910160954 3.7573402931980686 24.922708678569087 0.9769495053535731 1.0703621899155769 0.47242064108643766 0.04907325982150991 836.818188826099 1110546.0066417686 0.013961884826584522 0.025115112881340773 5719.26596546798 -3.7573402931980686 0.0934126845620038 MLDEMKDNLLLDMYLAPHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLDEMKDNLLLDMYLAPHVR 20 1 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;Q13098-6 Q13098-7 GPS1 COP9 signalosome complex subunit 1 0 ; 205.62 5.0814e-22 345020000.0 549340.0 634260.0 660000.0 623010.0 587410.0 645870.0 719390.0 617720.0 972660.0 750020.0 False True 546382.4144774119 655370.9606817333 752922.2631771596 701883.0021213463 662213.1816481536 601222.5271144436 684590.3573633265 663817.4031186029 732960.9759762529 702153.0814755721 0.7781528400177228 0.9333733312178503 1.072305004479787 0.9996153554526056 0.9431179597709877 0.8562556271219044 0.974987328866609 0.9454026773244278 1.0438763217216653 1.0 19.42142607164666 4.700082612333561 3.938384766462051 0.9724818006970645 0.7667407147994704 0.5285257439166748 0.056538447439874205 0.1752303160092181 5.293715373849803 0.01421218987499419 0.09509931183818832 50128.2579497169 -4.700082612333561 -0.2057410858975941 MLDEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 MLDEQK 6 0 H3BV99 H3BV99 SNAP23 Synaptosomal-associated protein 0 ; 95.445 0.032873 1274720000.0 423930.0 1955140.0 1820850.0 2553700.0 1845410.0 851220.0 1036000.0 639330.0 206744.0 878630.0 False True 421647.6079830511 2020215.65299291 2077209.8528880796 2876998.158163238 2080412.0248979772 792377.1649563471 985884.7220956712 687040.0510519585 155794.7114276671 822555.0811670116 0.5126071404055186 2.456024768732448 2.525313988627982 3.4976358714865103 2.529206946173578 0.9633119812865916 1.1985637736222277 0.8352511178670378 0.1894033785635743 1.0 19.649752764428516 2.7165749455927464 7.0893058124780985 0.8540416305760274 2.3920122562278254 0.49779118463243865 0.734024164020584 0.16078674666849968 36.88900774865352 0.24344844753547093 0.23491030197986246 520.6848549078873 -2.7165749455927464 1.537970625651798 MLDGT(ph)VKT(ph)IMVDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLDGTVKTIMVDDSK 15 1 Q9Y490 Q9Y490 TLN1 Talin-1 2 MLDGT(1)VKT(1)IMVDDSK 74.12 0.039815 815480000.0 496380.0 319320.0 648210.0 269090.0 456970.0 524070.0 916650.0 286420.0 1200800.0 523220.0 True False 493707.545233003 329948.37316698354 739472.3336576778 303156.7664095806 515162.42082660605 487842.2744280837 872308.137556948 307794.11481129006 904878.9298956317 489827.6516488217 1.007920936213219 0.673600953429917 1.5096582056331864 0.6189049666533047 1.0517218027453212 0.9959467841105846 1.780847068597799 0.6283722729315427 1.8473414615318164 1.0 18.90191469335829 2.43624888299109 24.99997237110265 1.250489388926163 0.9717610007906405 0.13911946664893104 0.39971587080898596 345.35014728252406 211234.92321386092 0.13063887412454983 0.1093004245384064 273.0542137948649 -2.43624888299109 -0.2787283881355225 MLDHEYTTK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLDHEYTTK 9 0 P11387;E5RJ33;H0YBR3;H0YC03;E5RGE7;E5RGR4;E5RFE3;E5RGR2;E5RJ95;E5RFS0;E5RIC7;Q969P6-2;Q969P6 P11387;Q969P6-2 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial 0 109.66 0.0024125 191540000.0 493470.0 554100.0 514750.0 543280.0 500210.0 696960.0 540120.0 593480.0 856220.0 641640.0 False True 490813.2123496713 572542.8835394772 587222.3257127936 612059.192296247 563908.7785230473 648780.7956673674 513992.33214123023 637768.4912303766 645216.0537601908 600689.9858643588 0.8170823950784178 0.9531420483323365 0.9775796825842102 1.0189269118837208 0.9387684026588433 1.0800592833819405 0.8556698866914261 1.061726524893975 1.0741248713040579 1.0 19.19626108725366 5.623284996837845 1.026105231840295 1.0033084864320745 1.4043048527354717e-15 0.4329935498879087 0.06382331358440124 8.835297551389555 1.9411772009427513 0.018031357097176827 14.984726014004465 420034.53260842926 -5.623284996837845 -1.0033084864320732 MLDLLEDFLEHEGYKYER ddPTM_BT-474_Trastuzumab_2h_R1 2 MLDLLEDFLEHEGYKYER 18 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 221.24 3.8133e-19 352700000.0 454580.0 520390.0 495870.0 509750.0 505760.0 620020.0 617110.0 517010.0 782170.0 590410.0 False True 452132.5917885864 537710.8665676016 565684.1858206943 574284.2977341549 570165.5381256195 577159.4767700881 587258.0317108692 555591.9115235843 589414.6840410283 552729.5283245681 0.8179997062199468 0.972828189942211 1.02343760706144 1.0389969565673893 1.0315452837374248 1.0441987395165444 1.062469076857471 1.0051786326807846 1.0663708990320457 1.0 19.076214161766316 4.817479553147894 1.6844118182886456 1.0358252466866937 0.7099930947819273 0.914342309008599 0.020025833691212778 0.28400574295848985 0.6761853966954031 0.004912654563272968 0.15887323256088337 65687.01898945154 -4.817479553147894 -0.32583215190476644 MLDMGFEPQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLDMGFEPQIR 11 0 P17844;P17844-2;J3KTA4;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523 P17844;A0A1X7SBZ2;A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX5;DDX17;DDX3X;DDX3Y Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17;ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 185.6 1.0229e-05 410650000.0 329260.0 421420.0 368630.0 356300.0 372390.0 396680.0 407470.0 335380.0 418350.0 380060.0 False True 327487.3007442254 435446.70994623 420529.89981060085 401407.543467738 419811.6591715432 369258.4452842786 387759.11941343977 360407.758625133 315253.24810279626 355804.2454142634 0.9204142585846087 1.2238378702852148 1.1819136652542672 1.1281696287810694 1.1798950253748544 1.0378134888591632 1.0898102662096436 1.0129383313161702 0.8860300352395921 1.0 18.44072419921154 1.7796320165122477 1.3628019424988407 0.9446382091383252 1.1281487653270483 0.38000847210566413 0.08528011656836551 0.3987925970529409 1.3999584196499264 0.06493050333812951 0.025929661176239172 60.20492455667125 -1.7796320165122477 0.18351055618872314 MLDSGADYLHLDVMDGHFVPNITFGHPVVESLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLDSGADYLHLDVMDGHFVPNITFGHPVVESLR 33 0 Q96AT9-4;Q96AT9;C9J9T0;C9IZU8 Q96AT9-4 RPE Ribulose-phosphate 3-epimerase 0 162.87 1.6373e-14 501140000.0 180710.0 211020.0 180370.0 196240.0 214010.0 225340.0 223100.0 113960.0 211350.0 196390.0 False True 179737.07743876867 218043.67313571632 205764.52819585518 221083.96387905953 241262.90496334984 209762.77619330288 212307.80067523604 122464.27387715456 159265.62444490488 183856.22206206198 0.9775958377851207 1.1859466635951768 1.1191599929993008 1.2024829043013354 1.3122368242827802 1.1409065945154468 1.1547490658410788 0.6660871876058448 0.8662509359685615 1.0 17.48821847548815 1.7559162646433377 24.999999999999954 0.8173437074548661 1.1630758261964338 0.627609595137695 0.1094764871096711 3.666036953145322 5286.460690143497 0.048866570832616966 0.027099155369586188 57.00543507680912 -1.7559162646433377 0.34573211874156773 MLEQLDMR ddPTM_BT-474_Trastuzumab_2h_R1 6 MLEQLDMR 8 0 O00148;O00148-2;O00148-3;K7EQN7;K7EPJ3;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;A0A140T9K1;A0A140T973;A0A140T9L4 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 ;;;;; 176.75 0.00060136 1876414000.0 2643200.0 3142810.0 3055490.0 3024440.0 2756730.0 2821410.0 2906920.0 2408100.0 3638360.0 2839710.0 False True 2628969.30488713 3247416.530981233 3485676.433204819 3407333.793897182 3107783.2250811486 2626372.56758475 2766301.1740872115 2587804.6500840303 2741734.929526208 2658477.2766019506 0.9889004235715952 1.2215325515710485 1.3111552481126298 1.2816862584781674 1.1690087601777428 0.9879236473827465 1.0405585176274594 0.9734161254113657 1.0313177974688867 1.0 21.342168704327293 2.81856091523327 4.270314905142511 1.0049741038187114 1.2113728969126905 0.563313937167582 0.08261706006024754 0.16631737571633054 5.651391083082683 0.026728730053223897 0.02823179086764753 658.5077874199279 -2.81856091523327 0.20639879309397902 MLEVHFVGDDDVLNHILDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLEVHFVGDDDVLNHILDR 19 0 Q13416;C9JK08;B8ZZ80 Q13416 ORC2 Origin recognition complex subunit 2 0 ; 220.36 1.6876999999999998e-19 55908000.0 41708.0 52009.0 44108.0 49052.0 48529.0 48561.0 50425.0 37137.0 52310.0 51430.0 False True 41483.44876219441 53740.08812489559 50318.02300639118 55261.97817058514 54708.88049608155 45204.09237029817 47985.75010779367 39908.35151786495 39418.90141808839 48147.69336856175 0.861587458502866 1.1161508343406006 1.0450765028599804 1.1477596184632326 1.1362720967190498 0.9388630941106388 0.996636531276204 0.8288735913551216 0.8187079932644735 1.0 15.555179063486342 2.2252992533041347 1.7845895899192308 0.8734299580432777 1.0640271728300326 0.3559980483832007 0.09487555300330124 0.3345216256779408 2.123280358450753 0.04826402014971842 0.030019671867619297 167.9961207073337 -2.2252992533041347 0.19059721478675484 MLFKDDYPSSPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLFKDDYPSSPPK 13 1 P63279;H3BQQ9;B0QYN7;H3BPC4 P63279 UBE2I SUMO-conjugating enzyme UBC9 0 164.81 3.3194e-05 582920000.0 1310100.0 1289400.0 1039500.0 1136300.0 1008300.0 1508200.0 1408300.0 1344500.0 2142700.0 1490000.0 False True 1303046.567165793 1332316.8995412413 1185852.5645040278 1280155.4634925362 1136701.0283376758 1403941.6839209176 1340175.1487715584 1444833.4172326655 1614660.2957090016 1394906.9243468225 0.9341458877451311 0.9551296049126077 0.8501302443955633 0.9177353995084513 0.8148938172845805 1.0064769623093854 0.9607631343568728 1.0357919887086526 1.1575398096651364 1.0 20.411737430258135 2.0093086873730055 1.383027199382774 1.0754028783463532 0.9011635972579634 0.577357125305934 0.05959291533936018 0.29219137344448237 1.0410269273507002 0.04028964662681124 0.019145497208740862 102.16654039491141 -2.0093086873730055 -0.17423928108838982 MLGEDS(ph)DEEEEMDTSER ddPTM_BT-474_Trastuzumab_2h_R1 6 MLGEDSDEEEEMDTSER 17 0 A0A087X0M4;A0A087WWF4;Q9BWU0;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER 370.44 9.632099999999997e-105 2374720000.0 1838140.0 1921600.0 1601620.0 1608420.0 1618940.0 1820690.0 1764230.0 1733950.0 2015160.0 1901600.0 True False 1828243.6584765525 1985559.294368272 1827114.1744693997 1812045.807084981 1825102.4127908335 1694829.9857432542 1678887.4548869177 1863346.1538196949 1518550.81976056 1780238.2599583312 1.0269657155437975 1.115333457901723 1.0263312588912485 1.0178670169280566 1.0252012069629108 0.9520242452169991 0.9430689659069648 1.0466835792324276 0.8530042601129715 1.0 20.76363890796368 3.349029486532855 1.0369240996560545 0.9669630219727531 1.0686703566701183 0.38639465263317696 0.05254871906753369 0.5824243257679536 1.3211609730894613 0.020704347341497398 0.038353115092741266 2233.7238769254573 -3.349029486532855 0.10170733469736526 MLISAVS(ph)PEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 MLISAVSPEIR 11 0 A0AVK6;E9PMT9 A0AVK6 E2F8 Transcription factor E2F8 1 MLISAVS(1)PEIR;MLISAVS(1)PEIR;MLIS(0.001)AVS(0.999)PEIR;MLISAVS(1)PEIR 199.96 5.0831e-08 300950000.0 361851.0 368284.0 345804.0 336129.0 312569.0 433630.0 426386.0 326059.0 450940.0 466460.0 True False 359902.83442142553 380542.1103076203 394490.19741774927 378682.896935917 352372.80940838926 403654.17875522276 405760.08022730233 350391.17827405356 339811.8792864223 436690.1234435023 0.8241606922167745 0.8714236706497296 0.903364139099398 0.8671661588080544 0.8069172864038411 0.9243492286297297 0.929171644707001 0.8023794435996356 0.7781533427109582 1.0 18.736250376701737 3.471440595278215 24.924627807402654 0.8633771621210458 0.8698999674541344 0.0 0.06640639957398928 2477.5700746956454 10870524.125400845 0.018415991610936242 0.02500718192568413 2961.014916964567 -3.471440595278215 0.006522805333088688 MLKPAFIFDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLKPAFIFDGR 11 1 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 64.878 0.06108300000000001 211770000.0 311900.0 434300.0 506100.0 335190.0 214800.0 294050.0 386260.0 283490.0 711190.0 323360.0 False True 310220.76505534776 448755.4129601064 577354.4808999406 377625.0196321954 242153.506780653 273723.0156192451 367575.1281435083 304645.4633330514 535926.7539577573 302722.8879575758 1.0247681209318495 1.482396709372685 1.907204588312636 1.2474280427884812 0.799918065047625 0.9042032383676428 1.2142297221841416 1.0063509415771201 1.770354258885318 1.0 18.20763823151362 3.485686605880796 24.877486155267615 1.0989141530151123 1.4900114838321301 0.20015045802645437 0.3162834034356318 546.0065111417322 1585839.0576623345 0.08604856702006765 0.12248819381776609 3059.7546670025517 -3.485686605880796 0.3910973308170178 MLLVDELR ddPTM_BT-474_Trastuzumab_2h_R1 4 MLLVDELR 8 0 P18085;C9JPM4;C9JAK5;U3KQF2 P18085 ARF4 ADP-ribosylation factor 4 0 ;;; 151.27 0.001107 699500000.0 746320.0 1013490.0 982210.0 1057830.0 993070.0 948920.0 953770.0 807400.0 959430.0 928290.0 False True 742301.8960439472 1047223.4019823582 1120496.6304776336 1191751.1695382465 1119531.5781129566 883323.39391741 907632.5013447776 867652.2878941253 722991.3322033361 869045.7374509467 0.8541574557643422 1.20502679761601 1.2893413800799869 1.371333082000779 1.2882309064615238 1.0164291197242876 1.044401303902614 0.9983965751205356 0.8319370328240582 1.0 19.72907258180704 2.6309674087372916 5.026072338495242 0.9810630996308062 1.2155190529768902 0.39208095038464064 0.13895434881357624 0.24774343612718044 9.519955560934585 0.047814381168826886 0.04493335640756733 427.5308012597042 -2.6309674087372916 0.23445595334608405 MLLYTEVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLLYTEVTR 9 0 P50395;V9GYF8;Q5SX90;V9GYJ7;Q5SX86;G5E9U5;P31150 P50395;Q5SX86;G5E9U5;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 ; 156.75 0.00016325 288510000.0 359470.0 377320.0 375780.0 411080.0 362050.0 335810.0 373140.0 333930.0 450750.0 386130.0 False True 357534.6534608712 389878.8681052434 428686.5576616874 463122.6858510181 408154.92146152444 312596.2451117112 355089.79266677535 358849.55226218153 339668.7022405528 361486.8528174752 0.9890668240745132 1.0785423178366715 1.1858980605254354 1.2811605242109916 1.129100320745588 0.8647513531274947 0.9823034777037108 0.9927042974461222 0.9396433081677275 1.0 18.463583652125113 2.81679911384238 8.171175115124509 0.960915153446641 1.141616661876759 0.5583776748125358 0.07841261554889818 0.26478468327135635 25.375112689070868 0.02568649233849281 0.02725666977696243 655.841831590716 -2.81679911384238 0.1807015084301179 MLMRRDQVLK ddPTM_BT-474_Trastuzumab_2h_R1 4 MLMRRDQVLK 10 2 F8VYC4;A0A286YES2;P0DJD0;A0A1W2PNU4;P0DJD1 F8VYC4 RGPD1;RGPD2 RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 0 ;;; 64.297 0.042062 3345710000.0 6941130.0 6696330.0 6541760.0 6780970.0 6019470.0 7762670.0 8392500.0 5847730.0 9356300.0 8392400.0 False True 6903759.72731204 6919213.296033039 7462782.946002762 7639440.106731476 6786013.824306045 7226054.894259637 7986522.71253661 6284117.306771268 7050565.232996757 7856789.846904873 0.8786998076614875 0.8806667138690001 0.949851414053371 0.9723360628948196 0.8637132921379267 0.9197210355710724 1.0165121974953732 0.7998326834778268 0.8973849842470049 1.0 22.90550854110167 4.343378625816943 11.066529873244892 0.9179291124824877 0.8792660433130182 0.07195712579512514 0.061437396323625285 1.1855673734175454 116.90989150771415 0.015178333792293911 0.04161133299171402 22048.478517824056 -4.343378625816943 -0.03866306916946949 MLNS(ph)SFEDDPFFSESILAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLNSSFEDDPFFSESILAHR 20 0 A0A494C175;A0A0S2Z4A4;P58340 A0A494C175 MLF1 Myeloid leukemia factor 1 1 MLNS(0.5)S(0.5)FEDDPFFSESILAHR 58.92 0.045573 13639000.0 10583.0 12761.0 9132.5 13633.0 13095.0 10886.0 10439.0 10825.0 14207.0 11799.0 True False 10526.022303881833 13185.742170812597 10418.276618887 15358.936402177018 14762.57062985407 10133.47644288762 9934.025689147411 11632.816468236213 10705.875214046668 11045.977718367883 0.95292807683095 1.193714355306601 0.9431737854733214 1.3904551316120528 1.3364657259181343 0.9173906286301028 0.8993342139943434 1.053126917764147 0.9692102851379399 1.0 13.43123350191059 2.714134447440885 24.73933642215965 0.9721669203872708 1.1654197208548598 0.3333913326844915 0.1381619469638807 857.2433486708971 868232.9377527926 0.046126155135366144 0.043505705159844414 517.7670957573024 -2.714134447440885 0.19325280046758897 MLPDKDCR ddPTM_BT-474_Trastuzumab_2h_R1 17 MLPDKDCR 8 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ;;;;;;;;;;;;;;;; 98.299 0.007512100000000002 93391660000.0 144180210.0 168205100.0 166225800.0 136658780.0 94323360.0 130443820.0 159014280.0 120274270.0 235009600.0 140879450.0 False True 143403959.76928723 173803705.07136983 189628947.77944556 153959767.5360598 106334880.79764423 121426545.75512348 151322151.78286043 129249746.76776814 177094633.0473023 131888402.88803488 1.087312884446924 1.317808854042447 1.4377984995422899 1.1673487900733936 0.8062489079340508 0.920676443843263 1.1473499448721325 0.9799932665610729 1.3427612221344793 1.0 26.97474247128887 3.4744792943752967 24.936049798795278 1.0273488008776541 1.2876430915529997 0.34221971648883265 0.15515435528930568 82.61914717833018 779791.2154757343 0.042861645167511314 0.058377474928257005 2981.8053826033047 -3.4744792943752967 0.2602942906753456 MLPEIDQNKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLPEIDQNKDR 11 1 D3DQV9;P78344;H0Y3P2;P78344-2 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ; 110.08 0.0016807000000000002 1187060000.0 873740.0 943120.0 766840.0 762620.0 749690.0 902150.0 980060.0 816420.0 1253970.0 967050.0 False True 869035.8809216396 974511.17907192 874804.4065072337 859167.6138068098 845158.5777392371 839786.4939326716 932650.7536072244 877345.4060967588 944945.8958371291 905332.0410668406 0.9599084551316336 1.076413000829573 0.9662801787909404 0.9490082918023858 0.9335343712604104 0.9276005441529162 1.0301753514745722 0.9690868833747422 1.043756161246218 1.0 19.788087488891343 -0.9521008870568834 7.580563794866568 1.0000000001923373 0.9830029542897201 0.009877814559969278 0.04724456898016982 0.0 5.1858266265343415e-18 0.04546395526473963 0.010715956942579645 0.11166038294268385 0.9521008870568834 -0.01699704590261719 MLPHAPGVQMQAIPEDAIPEES(ph)GDEDEDDPDKR ddPTM_BT-474_Trastuzumab_2h_R1 22 MLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKR 33 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR 241.41 2.7448e-47 26708126000.0 5933815.0 4789731.0 4648893.0 4171316.0 4147666.0 5776652.0 5752450.0 5127093.0 7470458.0 5554201.0 True False 5901867.99934882 4949154.300881462 5303416.725497659 4699404.177905337 4675846.679957568 5377325.644016135 5474182.017006994 5509702.7145107305 5629463.724908619 5199727.136989285 1.1350341746521115 0.9518103874479636 1.0199413518780165 0.9037789972622213 0.8992484714620906 1.0341553512997763 1.052782554312383 1.0596138161397688 1.082645988260099 1.0 22.31000448710846 2.4974613925606524 23.7498255201945 1.0529681960697928 0.9769187275273185 0.19279292140254256 0.06526450665023582 595.8592338131792 695745.646771215 0.021283406548466773 0.019817228046281925 314.3846929544916 -2.4974613925606524 -0.0760494685424743 MLPHAPGVQMQAIPEDAVHEDS(ph)GDEDGEDPDKR ddPTM_BT-474_Trastuzumab_2h_R1 40 MLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKR 33 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 1 MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR 370.05 1.694499999999999e-148 159650070000.0 20350751.0 16864814.0 15981504.0 14786652.0 15311168.0 21120212.0 20167213.0 17674954.0 27804972.0 20418296.0 True False 20241184.81779698 17426149.13899463 18231560.849477034 16658640.627090426 17260954.488397215 19660221.456071347 19191647.860954855 18993948.81907785 20952809.218136247 19115182.868297294 1.058906156287271 0.9116391540201302 0.9537738129471022 0.8714873795279738 0.902997089137173 1.0285133860099243 1.0040002229214546 0.9936577091595334 1.0961343850330971 1.0 24.18821566621113 2.7284624507182618 24.532560044126463 1.0198367671508335 0.9351839510183063 0.3832130565597317 0.053410318054944 582.0818827547943 1414111.1874260611 0.017107918352738134 0.016306995836338982 535.1338838726379 -2.7284624507182618 -0.08465281613252718 MLQEDELRDAVLLVFANK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLQEDELRDAVLLVFANK 18 1 P84085 P84085 ARF5 ADP-ribosylation factor 5 0 248.35 1.5741000000000002e-24 213790000.0 244670.0 443180.0 393490.0 497880.0 411390.0 388500.0 536810.0 413510.0 642400.0 504220.0 False True 243352.72390539266 457930.9783920332 448889.97172360774 560911.5569512134 463778.0780004325 361643.9094306304 510842.44948665745 444368.2159612341 484089.1277189824 472040.24791553995 0.5155338447939606 0.9701100285710568 0.9509569866252711 1.1882706176604982 0.9824968952296081 0.7661293947446145 1.082201044810188 0.9413778124291278 1.025525111167212 1.0 18.848550348838856 4.740787778474367 4.956474432905018 0.9892795396516382 0.49083929071555893 0.6624529205097747 0.10162474571184776 0.10352108826511126 7.808521586029156 0.02418754049965005 0.17761204017259882 55053.860550334284 -4.740787778474367 -0.49844024893607924 MLQHIDYR ddPTM_BT-474_Trastuzumab_2h_R1 6 MLQHIDYR 8 0 P14678-2;P14678;P14678-3;J3QLE5;P63162;P63162-2;J3KRY3;S4R3P3 P14678-2;S4R3P3 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 ;;;;; 154.71 0.0004207 2594677000.0 2135080.0 2516840.0 2867780.0 2461600.0 1540010.0 1899240.0 2192360.0 1501239.0 3444390.0 1973140.0 False True 2123584.966509689 2600611.49793809 3271538.496809388 2773238.307606467 1736121.145145594 1767950.0091300644 2086307.1711714908 1613269.0773171787 2595566.236961372 1847212.5159098578 1.1496159473907106 1.4078572311194741 1.7710677405181874 1.50130982966001 0.9398599945553395 0.9570907483047493 1.1294353807168014 0.8733532625089168 1.405125947667644 1.0 20.816918422657064 3.244043056001409 24.9968012694017 1.0340555767265374 1.4763198885168294 0.5040161068431767 0.19684903580086846 103.99831751837367 474169.92069361464 0.05533301341916956 0.07283811603639434 1754.0543903619139 -3.244043056001409 0.442264311790292 MLS(ph)SSDAITQEFMDLR ddPTM_BT-474_Trastuzumab_2h_R1 7 MLSSSDAITQEFMDLR 16 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;E9PNZ4;E9PLY5;A0A5F9ZGX0;A0A669KBB0 H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 1 MLS(0.973)S(0.016)S(0.01)DAITQEFMDLR;MLS(0.99)S(0.01)SDAITQEFMDLR;MLS(0.986)S(0.013)SDAITQEFMDLR;MLS(0.987)S(0.012)SDAITQEFMDLR;MLS(0.333)S(0.333)S(0.333)DAITQEFMDLR;MLS(0.959)S(0.039)S(0.002)DAITQEFMDLR;MLS(0.481)S(0.481)S(0.038)DAITQEFMDLR 366.7 3.608299999999998e-104 958608000.0 410835.0 477356.0 458718.0 457349.0 465034.0 490615.0 473124.0 412989.0 485935.0 445298.0 True False 408623.11000805977 493244.5058922049 523301.5071516678 515249.3365069504 524253.32342753414 456699.9398334841 450237.1846108038 443808.3362956499 366182.8304453978 416878.70040120155 0.9801966605988824 1.18318471396478 1.2552848266127428 1.2359694462947555 1.2575680237992393 1.0955223651243369 1.0800196416307626 1.064598253325323 0.8783917962059123 1.0 18.66926813679525 1.824452693363806 1.2547976137954304 0.9522029414124996 1.1837882984385044 0.5093427089167117 0.08561488048498049 0.36422072397054067 1.0681557659082355 0.06980536108901272 0.028695253244859963 66.75021876226799 -1.824452693363806 0.2315853570260048 MLSELKDEYDDLAESEQFGVVMGTVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLSELKDEYDDLAESEQFGVVMGTVPR 27 1 H9KV28;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 H9KV28 DIAPH1 Protein diaphanous homolog 1 0 ; 198.09 5.2186e-25 212350000.0 191212.0 165002.0 145087.0 160153.0 141895.0 202953.0 190497.0 171062.0 250510.0 184442.0 False True 190182.53583765036 170493.99182418463 165513.98848118907 180428.35337914317 159964.487172443 188923.33680997326 181281.93234079093 183827.51507523557 188775.16716202075 172670.7536512593 1.1014171874280423 0.9873935696633893 0.9585525341221094 1.0449271203364976 0.9264133258810062 1.0941247015782365 1.049870510827349 1.0646129190268634 1.0932665965151651 1.0 17.397664219519125 2.7048836126069284 24.987287002378647 1.0634423459521103 1.0026102010269287 0.2374911963726728 0.05057027482422376 840.0059885403145 623256.9253225831 0.015503524945834502 0.01461765388805768 506.85485708784796 -2.7048836126069284 -0.06083214492518163 MLSPANS(ph)LDIAMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLSPANSLDIAMEK 14 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 MLSPANS(1)LDIAMEK 162.41 4.6602e-06 24197000.0 50147.0 52288.0 40851.0 45182.0 38144.0 50793.0 49097.0 46083.0 60229.0 55192.0 True False 49877.01412385549 54028.374471236515 46602.46571674271 50902.036567385185 43001.41230279907 47281.799463861025 46721.990541246305 49521.94746473248 45386.369977251874 51669.59930775153 0.9653067721075377 1.0456511216476787 0.9019320130425581 0.985144790154175 0.8322381609092129 0.9150796618770712 0.9042452654405821 0.9584349042417123 0.8783960120713179 1.0 15.657028075408967 4.229489905220433 24.999896832551673 0.9203776675934884 1.0054789522130159 0.3052786933139219 0.050368704694967896 185.4321005570396 511076.3185370024 0.011733170775784743 0.02591817714344828 16962.50174011924 -4.229489905220433 0.08510128461952748 MLTEAIMHDCVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 MLTEAIMHDCVVK 13 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 Q04637-9;A0A0A0MSA7 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 0 ; 146.5 4.0494e-05 760970000.0 1206820.0 1237600.0 1116460.0 1116140.0 1091630.0 1319780.0 1298480.0 1202890.0 1674070.0 1475470.0 False True 1200322.6152103068 1278792.7678550002 1273647.8635557161 1257443.2095595887 1230642.6099020683 1228546.715027945 1235667.5617247 1292655.7599516548 1261517.8798887248 1381304.2413865812 0.8689777235501707 0.9257864629238538 0.9220617915986434 0.9103303760924832 0.8909279889466815 0.8894106585777982 0.8945658202600695 0.935822624170082 0.9132802478202684 1.0 20.39759968703582 0.3668070743774886 0.7588413187685616 1.0012361703189763 0.9026940024704082 0.715659980828736 0.01817645201770717 1.2027481530972923 0.9790803979409833 0.02162381811671922 0.00642593305600532 2.327057284804319 -0.3668070743774886 -0.09854216784856806 MLVDLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 MLVDLAK 7 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;K7EQ48;A0A0J9YX90;K7ERC6;K7EPY4;K7EP41;A0A2R8YF08;K7ELR7;K7ENA0;K7ERK8;A0A0J9YXM3;A0A0J9YXH9;K7EIL4 P06744 GPI Glucose-6-phosphate isomerase 0 ; 108.09 0.017057 193687000.0 905740.0 925590.0 799540.0 752490.0 708120.0 925810.0 980430.0 793540.0 1175080.0 950490.0 False True 900863.596477174 956397.7036190304 912108.2822737369 847755.1568454617 798294.8846439297 861810.9338223211 933002.8552936862 852757.9843144726 885497.2792652887 889828.9144445695 1.012400902975256 1.074810773277707 1.0250378106032598 0.9527170258056065 0.8971330012828642 0.968513070133558 1.0485193728235565 0.9583392610328509 0.995132058411493 1.0 19.763168453202294 3.8940432304777173 4.920723205566087 0.9731556839972203 1.045016687604651 0.3576625240255451 0.03913656406598427 0.23547414150979984 8.758490680647355 0.010625284935924897 0.019932989711365104 7835.076306864492 -3.8940432304777173 0.07186100360743064 MLVLVLGDLHIPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLVLVLGDLHIPHR 14 0 Q9UBQ0 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 92.856 0.0027715 92727000.0 34741.0 42863.0 32910.0 39989.0 32798.0 38452.0 40601.0 23140.0 40350.0 31435.0 False True 34553.95831608795 44289.66904376932 37543.441941152036 45051.603299835464 36974.63089102358 35793.90374627181 38636.97451911812 24866.824302539128 30406.283162299085 29428.7913871425 1.1741548560905102 1.5049775052304581 1.2757384918483212 1.5308682815808263 1.2564101054852654 1.2162886091852974 1.3128970881216242 0.844982859656394 1.033215491669279 1.0 14.844940672912344 1.7643601190518154 11.946659155632656 0.9548434219710669 1.3307530757545434 0.6708460187366254 0.11711478187939699 0.1679096887807065 76.43568167716262 0.05262907990839449 0.029042928227515495 58.12461898573519 -1.7643601190518154 0.3759096537834765 MLVQCMQDQEHPSIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLVQCMQDQEHPSIR 15 0 H0Y8C6;O00410-2;O00410;O00410-3;H0Y3V4 H0Y8C6 IPO5 Importin-5 0 ; 241.89 6.6814e-18 492810000.0 195134.0 260790.0 280010.0 285850.0 300220.0 291950.0 295940.0 272160.0 281480.0 320710.0 False True 194083.4202254254 269470.2374991162 319432.9741094496 322038.58069113945 338451.2374566464 271768.1836763768 281624.25159941404 292469.96120047703 212113.02563875957 300242.01322635525 0.6464232574909631 0.897510093951975 1.0639183060254331 1.0725966603759467 1.1272614176134133 0.9051637402640524 0.9379908180508199 0.9741140423941309 0.706473499026419 1.0 18.1957663435751 -0.2975457233072012 7.032325863242585 0.9999961731663133 0.9417521404849215 0.012275393081455643 0.14607917392124226 0.0 0.0 0.14183416388147901 0.03343063302817264 0.5040275513785225 0.2975457233072012 -0.05824403268139178 MLVTFDEELRPLPVSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MLVTFDEELRPLPVSVR 17 1 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ; 214.54 5.3850000000000005e-15 1442880000.0 503530.0 700170.0 643400.0 629520.0 642180.0 599590.0 575760.0 523330.0 691120.0 587340.0 False True 500819.0504274428 723474.7351882979 733985.1274669467 709217.167453861 723957.8165009301 558141.7545830419 547908.289183209 562383.5420158945 520802.7365335348 549855.4583529272 0.9108194577673717 1.3157543936281748 1.3348692212051025 1.2898247288083602 1.316632954175849 1.015069953574592 0.9964587617706825 1.0227843217206478 0.9471629836931712 1.0 19.06869289866806 2.722490770457355 19.38754422655664 0.9997814786216034 1.2468971556079103 0.5075061073935627 0.11648053682299744 34.75276493744435 41926.59215263488 0.03727777026918371 0.03536922973158317 527.8259894061625 -2.722490770457355 0.24711567698630688 MLVY(ph)LDMSKNR ddPTM_BT-474_Trastuzumab_2h_R1 1 MLVYLDMSKNR 11 1 A0A075B6E9;A0A494C1A4;Q96NW7-2;Q96NW7 A0A075B6E9 LRRC7 Leucine-rich repeat-containing protein 7 1 MLVY(0.811)LDMS(0.189)KNR 40.724 0.080199 322620000.0 11304.0 12693.0 15713.0 12810.0 7759.3 9050.9 8766.6 17695.0 10860.0 7743.3 True False 11243.140519992472 13115.478831919467 17925.253820155645 14431.744686561102 8747.400862025712 8425.232586526878 8342.52606633583 19015.490753389357 8183.698516544438 7249.11596462734 1.5509671213502867 1.809252175840134 2.472750319849124 1.9908282274669067 1.2066851881952747 1.162242765550792 1.1508335784727233 2.623146166536308 1.1289236586195435 1.0 12.823589352725858 -2.5201071538999593 0.22314896115040048 5.0726195437972254e-18 1.8505364454992073 0.15316885477064968 0.5153751929116536 94.13386823375295 2.5291644040713197 49.02415215295552 1.1169952602981827 0.003019206696690519 2.5201071538999593 1.8505364454992073 MLWGSDPYPHAEPQQAT(ph)TPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 MLWGSDPYPHAEPQQAT(0.502)T(0.498)PK 183.39 1.6143000000000002e-16 772550000.0 402870.0 369690.0 304310.0 291300.0 296640.0 378680.0 363910.0 328580.0 461970.0 338470.0 True False 400700.9926830644 381994.90816767554 347154.20289006276 328178.5501323384 334415.3456769694 352502.74291683704 346306.2830287988 353100.30809543264 348123.68358085013 316868.5548212541 1.2645653429040957 1.2055311338266408 1.0955779537224601 1.0356930188843267 1.0553756142373087 1.112457318826364 1.0929020180754463 1.114343164453844 1.0986375210920727 1.0 18.273524972104727 4.328886287954729 2.9005155055749565 1.080313790109292 1.2563170602194733 0.7800820061877819 0.03452924777695239 0.11911448034234152 1.9287374162072806 0.00892678054612506 0.03190791690094696 21324.86487565338 -4.328886287954729 0.17600327011018124 MLWGSDPYPHAEPQQATT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 MLWGSDPYPHAEPQQAT(0.186)T(0.814)PK 201.17 4.7298e-21 659610000.0 513660.0 389480.0 424840.0 373150.0 369430.0 460390.0 448300.0 406610.0 537680.0 405040.0 True False 510894.5116329908 402443.60635436786 484653.77922452235 420390.7517400681 416474.72071683797 428564.3229414878 426614.01632769266 436953.3029237436 405175.96854287403 379190.0004278098 1.3473311824061536 1.0613244175751546 1.2781291138419426 1.1086546355805131 1.098327277214491 1.1302099803738834 1.1250666310988637 1.15233340127842 1.0685302040817173 1.0 18.532561394043697 7.999999999999999 0.10457087741857853 0.960046890492707 1.7697192998117455 0.4447514119166581 0.07303352425531724 120.29664960574802 0.8844042883605628 0.733784939501874 14.012161229840743 99999999.99999979 -7.999999999999999 0.8096724093190385 MMDKVEFVHMLNATMCATTR ddPTM_BT-474_Trastuzumab_2h_R1 1 MMDKVEFVHMLNATMCATTR 20 1 P49591 P49591 SARS Serine--tRNA ligase, cytoplasmic 0 130.25 9.9037e-06 233470000.0 251430.0 306060.0 321440.0 330820.0 266100.0 345750.0 351740.0 256580.0 346150.0 329240.0 False True 250076.3288164993 316247.0220828228 366695.95799343416 372701.7780802616 299986.25770173105 321849.1163079544 334724.9924227143 275727.3024868402 260845.97067236283 308227.62132345466 0.8113365302653026 1.0260177875199334 1.1896920737308703 1.20917708958065 0.9732620860312999 1.0441929731216573 1.0859668935103426 0.8945574095628875 0.8462770778048816 1.0 18.23363662688266 1.7078619766913563 6.541765154710027 0.9034756030912523 1.0561186527740334 0.2328287696594239 0.1108497074636673 0.18170463025365433 18.345708312325915 0.057800570915211624 0.02973178631817106 51.03427819491959 -1.7078619766913563 0.15264304968278108 MMEIMTR ddPTM_BT-474_Trastuzumab_2h_R1 1 MMEIMTR 7 0 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;H0Y9Y4;D6RB09;D6R9B6 P61247 RPS3A 40S ribosomal protein S3a 0 79.45100000000002 0.075815 125260000.0 173890.0 208150.0 210010.0 206780.0 205990.0 212090.0 205220.0 178630.0 232080.0 195690.0 False True 172953.79556099506 215078.1469206679 239577.582560357 232958.3267983688 232221.60550161442 197428.7175061578 195292.72458346898 191960.27766476083 174886.9937126736 183200.89666136206 0.9440663157926117 1.1740016061069254 1.307731495458805 1.271600363555976 1.2675789787801353 1.0776623974231696 1.0660031044741995 1.0478129810662993 0.9546186558024533 1.0 17.483067039038342 2.540673224649824 3.788405977572141 1.0283442363855029 1.202303218299807 0.4160385007680716 0.09808654882241986 0.24842207256060106 7.032576380501433 0.035564578660284146 0.03227736457491957 347.27476384069786 -2.540673224649824 0.17395898191430414 MMENGIKPVYVFDGKPPQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 MMENGIKPVYVFDGKPPQLK 20 2 P39748;P39748-2;F5H1Y3 P39748 FEN1 Flap endonuclease 1 0 134.29 5.194500000000002e-06 608970000.0 737940.0 661380.0 594190.0 572950.0 607220.0 855220.0 782110.0 742060.0 1153500.0 871420.0 False True 733967.0130328408 683393.6334873477 677846.7872079344 645485.4112541127 684545.8677250843 796100.6543713348 744276.3513496589 797436.285304329 869235.3811081032 815805.2295398039 0.8996841236809329 0.8376921460442837 0.830892917406656 0.7912249001127774 0.8391045349283148 0.9758464711245055 0.9123211330350328 0.9774836645189969 1.0654937595808736 1.0 19.637865229675803 2.2409905100787864 0.9967492709714524 1.0195936092728792 0.8357887870922844 0.7453439475710231 0.042763573324613564 0.2820188177122552 0.5347457057045943 0.0321173340322723 0.018227527085565857 174.17688129738772 -2.2409905100787864 -0.1838048221805948 MMLDDIVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 MMLDDIVSR 9 0 A0A087WTP3;Q92945;M0R0I5;M0QYH3;M0QXW7 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ;; 109.71 0.0055935 270007000.0 453830.0 580070.0 536770.0 570750.0 542710.0 521540.0 537540.0 460900.0 624170.0 549960.0 False True 451386.62970525346 599377.2792902803 612342.5503115216 643006.8914796849 611820.9016058118 485487.1673731036 511537.13659778656 495294.6984027778 470351.6669494977 514861.08195555507 0.8767153811486164 1.1641534003963054 1.1893354766410205 1.2488939522043576 1.1883222932329283 0.9429478832020418 0.9935439957024069 0.9619967710931658 0.9135506322656961 1.0 18.973823696229353 2.7339724677049126 24.825439301962007 0.9628569803073427 1.1447024654774474 0.44060068359959326 0.09596645720320145 329.90824160166795 1785053.9189794327 0.03122751286100913 0.03035636158267447 541.9665310991834 -2.7339724677049126 0.18184548517010468 MMNGGHYTYSENR ddPTM_BT-474_Trastuzumab_2h_R1 8 MMNGGHYTYSENR 13 0 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 ;;;;;;; 199.31 1.1883e-07 2597175000.0 1755664.0 2145038.0 2634648.0 1977979.0 1450858.0 1822325.0 2145193.0 1498481.0 3000473.0 1932897.0 False True 1746211.7000966067 2216434.2931271465 3005583.5376290623 2228390.9385932437 1635616.1663908968 1696351.9620416302 2041421.8191569299 1610305.2613523395 2261046.633428331 1809537.858623623 0.9650042367308173 1.224862073243949 1.6609674803461585 1.2314696418057869 0.9038861268340552 0.9374503848910436 1.1281454043242198 0.8898986300166031 1.2495160698920864 1.0 20.787189860995497 3.3735316731530234 6.084243116104453 1.009480210970894 1.3040458920773577 0.3026336531582262 0.1875318722450549 0.23700074887060565 12.067103627336142 0.05270753572176466 0.07165413407157786 2363.3697537323965 -3.3735316731530234 0.29456568110646364 MMNGGHYTYSENRVEK ddPTM_BT-474_Trastuzumab_2h_R1 5 MMNGGHYTYSENRVEK 16 1 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 ;;;; 127.83 3.8497e-05 1864810000.0 1117300.0 1516500.0 1484080.0 1595880.0 1535000.0 1661450.0 1812580.0 1484200.0 2083640.0 1906050.0 False True 1111284.5809436992 1566975.7857563912 1693025.5641453955 1797918.2443707353 1730473.1513421917 1546597.8721326136 1724898.58067198 1594958.5406148892 1570154.8413455472 1784404.257148495 0.6227762439434822 0.8781506653993543 0.9487903637098895 1.0075733888036311 0.9697764082380717 0.8667306558683627 0.9666523568086495 0.8938325125740605 0.8799322435234931 1.0 20.76701106446698 4.733569096933146 2.8269252816141477 0.93724199975156 0.5676501871177192 0.8109456686515997 0.046020392956274886 0.1725260285727309 1.9351651308623325 0.011586420120056942 0.14627537372871585 54146.33887042192 -4.733569096933146 -0.3695918126338408 MMVDKDGDVTVTNDGATILSMMDVDHQIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 MMVDKDGDVTVTNDGATILSMMDVDHQIAK 30 1 P48643;B7ZAR1;E9PCA1 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 367.48 8.001099999999997e-137 1597400000.0 911960.0 749860.0 773280.0 724980.0 708830.0 1184110.0 954330.0 945770.0 1503550.0 1077850.0 False True 907050.1086882822 774818.6368000577 882151.1025297488 816762.3936661268 799095.2989354298 1102255.2627951198 908165.4120053685 1016348.1599227493 1133020.2490377908 1009060.6902061878 0.8989054052863152 0.7678612835881399 0.8742299755523062 0.8094284135667127 0.7919199575321337 1.09235774764934 0.9000106939254539 1.007222033111876 1.1228464848891038 1.0 19.944581517630052 2.747036961519666 24.99908872075163 1.0130767788826807 0.8265863706449753 0.6854740414701769 0.06615802214925114 372.7432467659301 1099323.002931983 0.019843707159519833 0.020737477113474605 558.5177265069929 -2.747036961519666 -0.18649040823770535 MMYGVSPWGDSPIDFEDSAHVPCPR ddPTM_BT-474_Trastuzumab_2h_R1 2 MMYGVSPWGDSPIDFEDSAHVPCPR 25 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 177.47 3.0751e-17 488070000.0 166208.0 202978.0 196351.0 223670.0 197992.0 238530.0 228290.0 204000.0 226390.0 237740.0 False True 165313.15459544485 209734.0000272079 223995.51408651314 251986.59906659802 223205.10760947462 222040.98253922342 217246.7405475106 219223.5158910103 170599.2179705799 222567.2296605458 0.742756042062331 0.9423399857521215 1.0064173168176902 1.1321819454324966 1.0028660012073731 0.9976355588281123 0.9760949124399406 0.9849766123492877 0.7665064539410125 1.0 17.763881663313555 4.72167141309343 3.0778129508031986 0.988264578820075 0.709328858793653 0.41998596649986153 0.08420681260762201 0.3275863707444964 4.796265198880846 0.020781417278264738 0.2178182353560353 52683.11105383163 -4.72167141309343 -0.278935720026422 MNEAFGDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 MNEAFGDTK 9 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;; 175.93 0.00012455 1301500000.0 2187960.0 2189700.0 1924840.0 1876490.0 1895730.0 2425750.0 2433950.0 2255230.0 3183640.0 2378480.0 False True 2176180.2664652066 2262582.8407983985 2195840.7409907966 2114053.441599144 2137139.978627967 2258063.6121012894 2316210.539908068 2423526.714425897 2399074.580590381 2226683.3700808245 0.9773191355833476 1.0161223958466403 0.986148623776308 0.9494180762316503 0.9597862037072622 1.0140928173453445 1.0402065111861833 1.0884020364053502 1.07742062155128 1.0 21.08646499368665 2.314137079592419 2.4805451674422154 1.0640885853013156 0.9792681083682248 0.5953698542920436 0.02814697204379175 0.1772015816554396 2.2372436389905044 0.011811412074453577 0.008819432828129047 206.12804278498552 -2.314137079592419 -0.0848204769330908 MNESDIWFEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MNESDIWFEEK 11 0 Q13596-2;Q13596;H0YK42;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 0 118.48 0.001954 0.0 67021.0 59512.0 57343.0 45304.0 50145.0 62196.0 64306.0 54655.0 73817.0 69853.0 False True 66660.16638273308 61492.820944236344 65416.395965708994 51039.48175487621 56530.66851729917 57896.536913635704 61195.27310722419 58733.63363246655 55625.78944712352 65394.921735837874 1.0193477507627602 0.9403302169644912 1.0003283776369956 0.7804808141073962 0.8644504346324358 0.8853368943158642 0.9357802025426665 0.8981375322952518 0.8506132887783449 1.0 15.996890986664518 3.7924012443910353 24.999651173776833 0.8862766832118515 0.9820350004080773 0.3902176133641444 0.05650874599939582 327.2326018664572 151941.63881692596 0.014033073616644551 0.025298465809759644 6200.13640741338 -3.7924012443910353 0.09575831719622585 MNGFIDQIDGIVHFETR ddPTM_BT-474_Trastuzumab_2h_R1 5 MNGFIDQIDGIVHFETR 17 0 D6RFN0;Q9BT78;D6RD63 D6RFN0 COPS4 COP9 signalosome complex subunit 4 0 ;;;; 195.96 1.6429000000000006e-11 892438000.0 681844.9 817218.5 750288.2 728986.7 813115.8 837671.2 791564.2 736655.8 961258.1 828041.9 False True 678173.9228184894 844419.1237534838 855922.2569380569 821276.3414753097 916661.2774150659 779764.9616099033 753273.215577107 791628.7964583584 724368.9214536222 775195.5570196633 0.8748423758074856 1.0892981985087211 1.104137206653709 1.0594440770956037 1.182490365320572 1.005894518549368 0.9717202436932953 1.0211988307851954 0.9344337888603871 1.0 19.56420077650551 2.4986787591678454 24.60445181770017 0.9874081408618073 1.06859505428385 0.20196443923296925 0.07525995295107776 982.3050424215722 1121144.1194870144 0.024129813224737673 0.022542744827152374 315.2671778716893 -2.4986787591678454 0.08118691342204276 MNGVMFPGNS(ph)PSYTER ddPTM_BT-474_Trastuzumab_2h_R1 12 MNGVMFPGNSPSYTER 16 0 Q9NY27-2;Q9NY27;Q9NY27-3 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(0.899)PS(0.101)YTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(0.982)PS(0.018)YTER;MNGVMFPGNS(0.999)PS(0.001)YTER;MNGVMFPGNS(0.891)PS(0.109)YTER;MNGVMFPGNS(0.792)PS(0.208)YTER;MNGVMFPGNS(0.747)PS(0.253)YTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(0.985)PS(0.014)YTER;MNGVMFPGNS(1)PSYTER 481.08 5.184699999999995e-231 8271120000.0 4221489.0 4764617.0 4399239.0 4504110.0 4483623.0 4696460.0 4713440.0 4231270.0 5195270.0 4496391.0 True False 4198760.972275522 4923204.396573197 5018613.612329133 5074329.864183191 5054585.812534413 4371804.774477679 4485432.900110646 4547028.8533537 3914965.321551362 4209427.476825991 0.9974660438719538 1.1695662708709764 1.1922318747520715 1.2054679388393592 1.2007775024896479 1.03857467518935 1.0655683996942906 1.080201257388634 0.9300469821856486 1.0 22.005192595368385 2.7243967574358963 23.195830538659433 1.0356682882275612 1.1590997163752417 0.47079644289274414 0.06821548335419443 294.0368451484127 481535.74179867905 0.022393857258745015 0.021231851401339593 530.1475484337669 -2.7243967574358963 0.12343142814768049 MNGVMFPGNSPS(ph)YTER ddPTM_BT-474_Trastuzumab_2h_R1 1 MNGVMFPGNSPSYTER 16 0 Q9NY27-2;Q9NY27;Q9NY27-3 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 MNGVMFPGNS(0.198)PS(0.8)YT(0.002)ER 146.86 1.1367e-06 243640000.0 294000.0 389080.0 376970.0 411870.0 361660.0 370650.0 402740.0 351730.0 395160.0 382580.0 True False 292417.13666647056 402030.29259617353 430044.099318021 464012.6997700173 407715.25727323577 345027.83791624964 383257.92758379434 377977.8786487499 297778.1128727164 358163.4168567831 0.8164349648903362 1.1224772650550496 1.2006924188183643 1.2955334853630782 1.1383498092890563 0.963325179729939 1.0700644162579163 1.0553224055261063 0.8314029263122296 1.0 18.45025846107777 2.746593739554343 24.120118964832592 1.0002081907855178 1.1299537310911092 0.19257786319539294 0.12985149832656848 669.6428733746948 2010656.041486148 0.041458767577964926 0.04320188559563765 557.9480184869944 -2.746593739554343 0.12974554030559138 MNILGSQS(ph)PLHPSTLSTVIHR ddPTM_BT-474_Trastuzumab_2h_R1 3 MNILGSQSPLHPSTLSTVIHR 21 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 MNILGSQS(1)PLHPSTLSTVIHR;MNILGSQS(1)PLHPSTLSTVIHR;MNILGS(0.015)QS(0.973)PLHPS(0.005)T(0.005)LS(0.001)T(0.001)VIHR 286.42 2.8848e-45 3966593000.0 1453705.0 2392798.0 2427869.0 2724652.0 2695476.0 2678399.0 2943141.0 2303080.0 2562313.0 2833435.0 True False 1445878.4138018074 2472440.834953065 2769691.8517843466 3069592.6638351358 3038728.8912620475 2493247.581403066 2800770.0259395554 2474947.5244032783 1930865.2943851328 2652602.7524742535 0.545079134994165 0.9320810787242304 1.04414121157074 1.1572002860103832 1.1455650072094772 0.9399249771106711 1.055857317243261 0.9330260711275878 0.727913477652879 1.0 21.33897720646378 4.729111279466118 3.269681492690385 1.005268813433786 0.4859280899613428 0.5798188768374604 0.11553910398185413 0.23149466588001005 4.038521404985114 0.02957624874477171 0.30068687731689064 53593.39625166707 -4.729111279466118 -0.5193407234724432 MNKGER ddPTM_BT-474_Trastuzumab_2h_R1 1 MNKGER 6 1 Q14444-2;Q14444;G3V153;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 72.234 0.078556 120730000.0 176720.0 184800.0 171790.0 162600.0 165930.0 108130.0 182530.0 169980.0 237420.0 213800.0 False True 175768.55915543778 190950.9562860411 195976.53877455206 183185.14332824657 187060.20195583682 100655.22761064107 173700.32656768616 182664.77074095054 178911.02226500725 200155.10095661116 0.8781617771187366 0.9540149382824608 0.9791233790091369 0.9152159622849518 0.9345762414338219 0.5028861474405327 0.8678286275868644 0.912616115542056 0.8938619171329083 1.0 17.61075885774174 MNLSEEVDLEDYVARPDK ddPTM_BT-474_Trastuzumab_2h_R1 4 MNLSEEVDLEDYVARPDK 18 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;;; 290.01 3.4697999999999996e-49 2142340000.0 1335730.0 1161031.0 1054263.0 952760.0 999388.0 1227603.0 1179282.0 1211280.0 1628360.0 1265340.0 False True 1328538.5780935555 1199675.214976941 1202694.06658173 1073379.318311317 1126654.1379632375 1142741.6940766273 1122235.6243652785 1301671.8643552097 1227072.4969061054 1184584.917887924 1.121522448945489 1.0127388901050018 1.015287336872475 0.9061227288163662 0.9510961358279192 0.9646768896180935 0.9473661258208383 1.0988421722235395 1.035867060585184 1.0 20.175950192321526 -0.10908821032853622 7.164797369861701 1.0000062256180615 1.0049621101969133 0.0005613395881860495 0.06413497185422283 0.0 0.0 0.06574633450534056 0.015496559668393837 0.7778785386927827 0.10908821032853622 0.004955884578851766 MNS(ph)LTFK ddPTM_BT-474_Trastuzumab_2h_R1 2 MNSLTFK 7 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 MNS(0.999)LT(0.001)FK;MNS(0.995)LT(0.005)FK 103.87 0.0086837 299660000.0 797760.0 577300.0 529650.0 517620.0 480680.0 751930.0 724290.0 704430.0 987400.0 727530.0 True False 793464.9487994682 596515.0815147805 604220.1161996716 583150.6389272257 541891.748786426 699950.8489528289 689253.3256435083 756998.1436230602 744068.5004821337 681098.4125302293 1.164978414575664 0.8758133487622911 0.8871260086410118 0.8561914522174042 0.7956144645431473 1.0276794602303714 1.0119731788582271 1.1114372456263246 1.0924537288495142 1.0 19.377503744056643 2.5474820501559767 7.384898326624482 1.0610433383470976 0.908543646807393 0.3230596967259325 0.0961568062999603 0.3069974387839062 28.474029632446964 0.031552084215743924 0.02960810205360553 352.7622062875539 -2.5474820501559767 -0.15249969153970466 MNS(ph)TGGQTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MNSTGGQTPR 10 0 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 MNS(0.646)T(0.354)GGQTPR 79.88600000000002 0.026918 265240000.0 470460.0 226150.0 226290.0 361590.0 240570.0 140090.0 205600.0 212870.0 239140.0 221050.0 True False 467927.0956330203 233677.26603943837 258149.6650520601 407367.2569253423 271205.16352989635 130405.9080363886 195654.34253172786 228755.4403319579 180207.1513118266 206942.39974957347 2.261146561551772 1.1291898920773003 1.247446948351106 1.9685055233645128 1.310534544192437 0.6301555804619849 0.9454531442976133 1.1054063382312227 0.8708082612838166 1.0 17.658869738975312 2.9950657390484756 24.411317768088505 0.9388927378600342 1.5921590457783008 0.5339173256873464 0.32462376356046024 136.31474069652256 674398.7917127566 0.0934972000867777 0.10885851061843602 988.7027430205836 -2.9950657390484756 0.6532663079182666 MNSEEEDEVWQVIIGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 MNSEEEDEVWQVIIGAR 17 0 Q9NR28-2;Q9NR28;Q9NR28-3;H7BZK7;A0A2U3TZH2;H7BZQ7 Q9NR28-2 DIABLO Diablo homolog, mitochondrial 0 ;; 175.15 2.9426e-09 160800000.0 60654.3 74861.0 75239.7 69118.0 71037.3 86534.0 70398.9 66148.0 80325.0 68545.0 False True 60327.74398812621 77352.70313056996 85832.79576480393 77868.33171317186 80083.47908393524 80552.10825912518 66993.43625708586 71084.29965273803 60529.98004985569 64170.399415673106 0.9401179443709624 1.2054265492334957 1.3375761495391278 1.2134618519166198 1.247981621014743 1.2552845080071446 1.0439928201650441 1.107742826911192 0.9432694918690459 1.0 15.969620342565015 1.7996755107689784 1.4514416032593376 0.988449872732625 1.2068208771211832 0.3884326072475184 0.10523206039279182 0.40858499545797194 1.6330977952145076 0.08117794399609728 0.033063413947296255 63.04860918985213 -1.7996755107689784 0.21837100438855828 MNTS(ph)RFADHHDLLT(ph)ET(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 MNTSRFADHHDLLTETK 17 1 C9J4A2;C9JYK8;A2RUB1-1;A2RUB1-2 C9J4A2 C17orf104 3 MNT(0.363)S(0.833)RFADHHDLLT(0.804)ET(1)K 44.052 0.084525 1027900000.0 198860.0 430240.0 316490.0 403820.0 419600.0 336000.0 380740.0 300290.0 283990.0 336170.0 True False 197789.35985542295 444560.2783144276 361049.041019605 454943.570595403 473033.5728359505 312773.1108589237 362322.1516319558 322699.1646417234 214004.46977103665 314715.3427903833 0.6284706620965755 1.4125789812876322 1.1472241480774654 1.4455716285126237 1.5030521506891237 0.9938286074195205 1.1512694246790538 1.0253683909419622 0.6799937615802057 1.0 18.263687988084385 1.6585826225320726 1.7712865596558314 0.8444633032207399 1.2191770475130432 0.2187549572133155 0.2515578580883063 0.458295555017705 2.935232589388704 0.19018144723888783 0.07122846830953725 45.55988535124442 -1.6585826225320726 0.3747137442923033 MPARAS(ph)PPHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 MPARASPPHSK 11 1 Q9HCM7;A0A3B3IRR3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 MPARAS(0.966)PPHS(0.034)K;MPARAS(1)PPHSK 97.203 0.003901 448910000.0 168348.0 224590.0 207155.0 212354.0 203100.0 215815.0 246800.0 186521.0 309490.0 255620.0 True False 167441.63307322125 232065.34238247803 236320.62337646156 239237.9946268539 228963.5811319861 200896.2170238649 234861.34113244386 200440.1441544467 233220.33645353033 239306.11275270744 0.6996964312660536 0.9697426434831115 0.9875243914921179 0.999715351500762 0.9567811640841409 0.8394947154211047 0.9814264183679391 0.8375889017159215 0.9745690729368622 1.0 17.86849772348783 4.742770804074032 24.79975665604323 0.9408869279574379 0.6996963249098147 0.6206581444972019 0.05826171515151892 266.44155702468225 1569385.9833450778 0.01429301919178193 0.11078066930792241 55305.81595452504 -4.742770804074032 -0.2411906030476232 MPDMHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 MPDMHFK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 67.032 0.066262 314140000.0 830990.0 945290.0 925030.0 794310.0 781950.0 1030500.0 919640.0 739770.0 1184700.0 912360.0 False True 826516.0421716693 976753.4062101282 1055266.1834951031 894869.5645575607 881526.6975192358 959263.9605360728 875153.4998340376 794975.3938759443 892746.5591666846 854132.4036893053 0.9676673529790569 1.1435620543034999 1.2354831393084125 1.0476941990402155 1.032072654908776 1.1230857843499047 1.0246110509962327 0.9307402347015046 1.0452086296112768 1.0 19.70410020158915 2.0592384903010617 5.141906958804482 0.9825622925624952 1.0952068565442235 0.2811027690490985 0.07231557574112125 0.23119695891885744 12.48355931471556 0.028921594905041696 0.020721870502322434 114.61421659988552 -2.0592384903010617 0.11264456398172829 MPEFYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 MPEFYNR 7 0 P00966;Q5T6L5;Q5T6L6 P00966 ASS1 Argininosuccinate synthase 0 ; 119.56 0.011062 274140000.0 487730.0 653280.0 624000.0 701000.0 618630.0 548160.0 589230.0 542080.0 594990.0 584930.0 False True 485104.11587189726 675024.0298839009 711853.7760947691 789746.5281248508 697408.8635927165 510266.9894298437 560726.6938228115 582532.7622264648 448362.6869575303 547599.2666162326 0.8858742979505613 1.2326971035864625 1.2999538521910567 1.4421979287972995 1.2735752330389318 0.9318255529868122 1.0239726895320678 1.0637939050322254 0.8187788302349042 1.0 19.06276098887442 2.741508246105258 24.749392921301254 0.9839198142173857 1.243208016055806 0.4407037984378316 0.14483271550075655 225.75436831923327 1895521.8837009636 0.04681771997000914 0.04772781501102433 551.4526729122349 -2.741508246105258 0.2592882018384204 MPEMHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 MPEMHFK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 92.925 0.015312 1595260000.0 3033700.0 3346600.0 3466900.0 2786200.0 2573700.0 3473600.0 3430600.0 2768300.0 4397000.0 3464500.0 False True 3017366.896275758 3457989.5579375816 3955009.385164995 3138932.6343244812 2901445.439484948 3233478.207974868 3264648.7718353416 2974884.603142565 3313418.266781394 3243392.6438923255 0.9303119380127474 1.0661643339573352 1.2194050549546396 0.9677929806727057 0.8945711352428135 0.9969431897380271 1.006553670886269 0.9172138343301138 1.0215902391654414 1.0 21.62907225580888 3.5440732175656926 24.99999308184398 0.9655318610874339 1.0750840275750089 0.26826922455124935 0.07499145889500379 222.36050123291898 83028.91606902829 0.01981227979124727 0.030693036031634296 3500.0416914387656 -3.5440732175656926 0.10955216648757493 MPEWIGGESELRK ddPTM_BT-474_Trastuzumab_2h_R1 1 MPEWIGGESELRK 13 1 H0YGT9;Q15040 H0YGT9 JOSD1 Josephin-1 0 66.498 0.089322 101270000.0 73326.0 111520.0 100670.0 99475.0 100740.0 103140.0 108410.0 101800.0 80085.0 118550.0 False True 72931.2209632845 115231.87578473649 114843.46096067393 112068.52480059839 113568.64186723923 96010.17456544466 103165.79413358276 109396.83292992567 60349.124834020375 110984.03750423864 0.6571325264725493 1.038274317424572 1.0347745814913958 1.0097715610347868 1.0232880729618608 0.865080931677025 0.9295552446417595 0.9856988030891167 0.5437640059879382 1.0 16.759992667503255 MPFLSISS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 MPFLSISSPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 MPFLSIS(0.014)S(0.986)PK;MPFLSIS(0.01)S(0.99)PK 146.11 3.0679e-05 440730000.0 1460300.0 1094660.0 982070.0 882060.0 811630.0 1474200.0 1265590.0 1147470.0 2274350.0 1341130.0 True False 1452437.9070545838 1131095.0963640565 1120336.919694536 993728.7055603513 914986.2695920921 1372292.0238935251 1204368.5766767 1233100.0381345951 1713866.917228625 1255537.9352008395 1.1568251873028812 0.9008848435815069 0.8923162640365172 0.7914764482216872 0.728760353581613 1.0929912871760497 0.9592450717023103 0.9821288577292926 1.3650459051677077 1.0 20.25987418861405 1.4105096936243378 6.423913096553246 1.185048709711205 0.9271055074473714 0.3184793288291812 0.14423496782636272 0.22944290684429297 15.331210448936778 0.0952076506023948 0.035537674710355724 25.734142034063318 -1.4105096936243378 -0.2579432022638336 MPGGPKPGGGPGLSTPGGHPKPPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MPGGPKPGGGPGLSTPGGHPKPPHR 25 2 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 47.28100000000001 0.050569 795280000.0 645620.0 701770.0 742080.0 697410.0 782280.0 869510.0 951090.0 744560.0 1088100.0 984490.0 False True 642144.0536551246 725127.9902210766 846558.413725011 785702.0344929419 881898.7210631716 809402.8203063756 905082.1431833704 800122.8479990722 819952.3347930026 921659.0053357056 0.6967262837313999 0.7867638530336452 0.9185158597963898 0.8524866897022911 0.9568600924611466 0.8782020417752641 0.9820141049386294 0.8681332720311619 0.889648264755296 1.0 19.813873556646953 4.504303303049904 1.7424837545416685 0.9149717823362118 0.6674664815833136 0.7039769430480906 0.047240445146368215 0.2933732570141593 1.2598569642227855 0.011578755493352947 0.10376686035973454 31937.675432546195 -4.504303303049904 -0.24750530075289823 MPLDDLDREDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 MPLDDLDREDEVR 13 1 P57740;P57740-2;P57740-3 P57740 NUP107 Nuclear pore complex protein Nup107 0 ; 161.21 3.8804e-05 1527750000.0 1402650.0 1651500.0 1455250.0 1518430.0 1490210.0 1557850.0 1472290.0 1322840.0 1646580.0 1533490.0 False True 1395098.2882490656 1706469.1791471662 1660136.5507402485 1710663.0823118638 1679979.4103333198 1450159.496284446 1401069.7080060206 1421557.0380454136 1240802.4220415957 1435621.3553131586 0.9717731511069272 1.1886624372308299 1.1563888657661514 1.1915837529030828 1.170210657647161 1.0101267238171698 0.9759326181800904 0.9902033240062265 0.8642964368351388 1.0 20.453243858286847 2.592985846258591 3.5286754302259005 0.9630678162051626 1.1427265008494711 0.6037157421377501 0.06860296459926185 0.1665174547395556 3.802278103110284 0.023167575332655923 0.021428723881603714 391.72911037205483 -2.592985846258591 0.17965868464430856 MPLDLS(ph)PLATPIIR ddPTM_BT-474_Trastuzumab_2h_R1 6 MPLDLSPLATPIIR 14 0 B8ZZU6;E9PBF9;P15336-5;P15336;E9PEK8;H7C2N6;P15336-3;P15336-7;P15336-4;C9JCI8 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR 261.17 1.7886e-24 945358000.0 848309.0 1069290.0 994560.0 913844.0 953221.0 1038979.0 994269.0 909107.0 1069152.0 1036849.0 True False 843741.79859999 1104880.6712505454 1134585.4031295087 1029536.556701464 1074608.044166485 967156.8272234919 946172.4099935733 976949.1806918085 805673.8155028109 970676.4091289102 0.8692307659533707 1.1382584977439298 1.168860592942288 1.0606382796769267 1.1070713515442738 0.9963740934957132 0.97475574876974 1.006462268479902 0.8300127703997943 1.0 19.888630904220083 2.3523894091501885 1.4752625449019765 0.9474936424285714 1.0779898940278763 0.27125402446003466 0.08836942445294498 0.531678700044147 2.3232399980518674 0.046480712244025085 0.03097146758316133 225.10721198494326 -2.3523894091501885 0.1304962515993049 MPLLELGGET(ph)TPPLSTER ddPTM_BT-474_Trastuzumab_2h_R1 1 MPLLELGGETTPPLSTER 18 0 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 MPLLELGGET(0.554)T(0.446)PPLSTER 99.451 0.011556 179980000.0 58673.0 64502.0 62842.0 54148.0 61165.0 63780.0 58731.0 54963.0 63193.0 57680.0 True False 58357.11108718312 66648.91007771758 71689.60736754419 61003.13124808051 68954.00019664183 59371.038721970646 55889.95715579237 59064.618156458855 47619.931892817025 53998.81301766751 1.0807109976304414 1.2342662061092189 1.3276145041204617 1.1297124480888368 1.276953998490323 1.0994878480485382 1.0350219575661064 1.0938132683978423 0.8818699751277232 1.0 15.720640074374707 2.1410822803694005 1.0452059274867513 0.9736368136750521 1.2160716532391513 0.5856868587933509 0.08185071346064322 0.37341916247764834 0.7647532991707183 0.059594067292607245 0.031015863388307457 138.3828530903556 -2.1410822803694005 0.24243483956409928 MPLLELGGETT(ph)PPLSTER ddPTM_BT-474_Trastuzumab_2h_R1 2 MPLLELGGETTPPLSTER 18 0 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 MPLLELGGET(0.24)T(0.76)PPLSTER;MPLLELGGET(0.017)T(0.699)PPLS(0.142)T(0.142)ER 124.45 0.00035555 320200000.0 135142.0 162059.0 140208.0 143938.0 138256.0 144510.0 136003.0 119616.0 148821.0 143491.0 True False 134414.41048768788 167453.03584826563 159948.067690217 162160.53604170453 155862.0820924859 134520.36383994942 129424.01530808666 128542.35331774053 112146.05864923219 134333.28153117423 1.0006039378744338 1.2465491346565922 1.190680863796947 1.2071508578763672 1.1602640858312954 1.001392672810809 0.9634545797800056 0.9568913366261375 0.8348345054252759 1.0 17.03545725613094 2.6187980715988517 2.3732258517690115 0.9378978532903268 1.1728797198281935 0.683001322592339 0.07224600077218965 0.16449784411345322 1.8241935440961965 0.02566950314982362 0.02363882213212921 415.7172747584883 -2.6187980715988517 0.23498186653786668 MPLLELGGETTPPLSTERS(ph)PEAVGSECPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 MPLLELGGETTPPLSTERSPEAVGSECPSR 30 1 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 MPLLELGGETTPPLS(0.007)T(0.007)ERS(0.986)PEAVGSECPSR;MPLLELGGETTPPLS(0.012)T(0.012)ERS(0.975)PEAVGSECPSR;MPLLELGGETTPPLS(0.002)T(0.011)ERS(0.987)PEAVGSECPSR;MPLLELGGET(0.001)T(0.001)PPLS(0.168)T(0.168)ERS(0.661)PEAVGSECPSR 251.08 3.8627e-47 1390440000.0 151123.5 181216.0 170549.0 188249.0 174508.1 176281.9 198188.0 168631.0 188914.0 161989.0 True False 150309.8678673993 187247.66501261463 194560.81676151755 212081.30409839517 196730.6721444547 164095.94717595718 188600.88928831773 181215.10151086745 142358.6760179077 151650.72333423968 0.9911582652732548 1.2347297849672563 1.2829534372394888 1.3984852787742126 1.2972616801230705 1.0820650476838682 1.2436530808536899 1.1949504593622517 0.938727312919885 1.0 17.210392853692873 1.2875240124653329 5.3894931010306095 0.9684936799949637 1.2247036766061477 0.4534833243013696 0.10798649736625976 0.1583698074066403 9.61199481818566 0.08206347794649603 0.027722509455211215 19.38759828463555 -1.2875240124653329 0.25620999661118393 MPLPS(ph)PTESR ddPTM_BT-474_Trastuzumab_2h_R1 2 MPLPSPTESR 10 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 MPLPS(0.999)PT(0.001)ESR;MPLPS(0.972)PT(0.028)ESR 141.1 3.9993e-05 1047690000.0 832240.0 1004070.0 909050.0 941380.0 949840.0 924410.0 888310.0 727470.0 804210.0 828030.0 True False 827759.3123105557 1037489.8629768667 1037036.3383957528 1060558.611478133 1070796.493857243 860507.7125270766 845339.0516262613 781757.5054178098 606023.2213618968 775184.4164878504 1.0678224364479718 1.3383781212700985 1.3377930674797132 1.3681371670024474 1.3813441951126038 1.1100683840186092 1.0905005746326306 1.008479387343389 0.7817794172225793 1.0 19.56418004302046 2.1310028733652633 1.3241170060249046 0.9150646309624704 1.3032436242755785 0.6868878072516849 0.10643998612081326 0.2484893362772822 0.8264969723465693 0.07051598896966195 0.036895326482058545 135.20815087631257 -2.1310028733652633 0.3881789933131081 MPNS(ph)PAPHFAMPPIHEDHLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MPNSPAPHFAMPPIHEDHLEK 21 0 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 MPNS(1)PAPHFAMPPIHEDHLEK 151.19 1.0745e-07 135130000.0 129660.0 126860.0 112600.0 125310.0 107040.0 129290.0 104530.0 30006.0 171360.0 104200.0 True False 128961.92496658028 131082.45841151048 128453.101263255 141174.2331516764 120670.90952421373 120352.48661592338 99473.48455662218 32245.200087380683 129130.62410635871 97549.8667898919 1.3220102621395204 1.3437482051497094 1.316794225254291 1.4472006758937457 1.2370176761401548 1.2337534696499892 1.0197193274581653 0.3305509392117584 1.3237396252368763 1.0 16.573852282299757 2.145100100612047 3.5420096301910715 0.7852485423794685 1.3239724866343523 0.37887502152962105 0.24143353364581702 0.18776405727111853 4.604415846144113 0.09635449113279851 0.06791565661950417 139.6690247341161 -2.145100100612047 0.5387239442548838 MPPSHQLDHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 MPPSHQLDHSK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 61.577 0.060498 30234000.0 34326.0 40377.0 39788.0 38275.0 25477.0 27517.0 42495.0 27931.0 55185.0 36454.0 False True 34141.192629977144 41720.92403658806 45389.804556504314 43120.61107557581 28721.34493599022 25614.81455805057 40439.35450333551 30015.353050744183 41585.396191114625 34127.4745101604 1.0004019670372228 1.2225025330886101 1.3300077198209 1.2635160290790926 0.8415901073324171 0.7505628507736355 1.1849501049746867 0.879507009574003 1.2185313090991794 1.0 15.058646036105271 3.2503885350305994 24.968889665934636 0.9705536162618587 1.21441397117843 0.3313110864801537 0.15597514711566599 241.1350994265742 509036.2674768969 0.04314220689147995 0.05795322215979156 1779.87103283935 -3.2503885350305994 0.24386035491657143 MPQDGS(ph)DDEDEEWPTLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MPQDGSDDEDEEWPTLEK 18 0 Q13895;F8WBL2 Q13895 BYSL Bystin 1 MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK 149.93 3.7739e-08 187277000.0 268860.0 248230.0 226288.0 225296.0 239119.0 302730.0 281990.0 263060.0 372110.0 297060.0 True False 267412.48763315385 256492.18549179606 258147.38346944435 253818.4504998808 269569.38728064706 281802.9876497674 268349.0663935896 282690.87299161364 280408.47651854093 278101.3764741389 0.9615647754912173 0.9222974324819557 0.9282492116447684 0.9126831866777323 0.9693205790576689 1.0133102943342418 0.9649325357386135 1.016502962249457 1.0082958958119959 1.0 18.085251359817203 3.022834826229767 4.316358237127592 0.9994891705731349 0.9306623633813136 0.7723884352835652 0.01772634805243204 0.09242793692953491 4.071987005245814 0.00524772164721985 0.006129911617931824 1053.9859611914605 -3.022834826229767 -0.06882680719182133 MPS(ph)LEISAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 MPSLEISAPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 MPS(1)LEISAPK 84.169 0.015844 251950000.0 318650.0 402270.0 326210.0 442390.0 395340.0 409650.0 342460.0 349290.0 504250.0 453040.0 True False 316934.4238053435 415659.31377265014 372137.5325318511 498396.528640731 445684.2056362359 381331.85971237544 325893.90147575655 375355.7934586814 379984.34410382423 424126.5993329418 0.7472637281033822 0.9800359478193331 0.8774208764957017 1.1751126418965459 1.0508282346289988 0.899099137644578 0.7683882642312843 0.8850088488885954 0.8959219834395116 1.0 18.694135439621466 2.4942379542060475 23.46734917149423 0.8695100696296674 0.9737240761544249 0.0886694706510146 0.11631503931552158 644.4902867824617 883610.9975721834 0.03874707600476495 0.035687529200573526 312.05989225249544 -2.4942379542060475 0.10421400652475754 MPSARPPS(ph)PPLSSWER ddPTM_BT-474_Trastuzumab_2h_R1 4 MPSARPPSPPLSSWER 16 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 MPSARPPS(0.998)PPLS(0.002)SWER;MPS(0.001)ARPPS(0.996)PPLS(0.001)S(0.002)WER;MPSARPPS(1)PPLSSWER;MPSARPPS(0.993)PPLS(0.007)SWER 138.46 3.9411e-06 3889850000.0 980180.0 1193800.0 1147200.0 1198170.0 1268160.0 1195550.0 1248250.0 1083470.0 1238210.0 1198340.0 True False 974902.819788235 1233534.9113326597 1308715.788358846 1349858.1991488622 1429652.6590267841 1112904.4425219807 1187867.378721933 1164324.0331491812 933069.7366639485 1121860.915249509 0.8690050669707219 1.0995435303656278 1.166557966829408 1.2032313282334512 1.2743582021562987 0.9920164143292787 1.0588365835507727 1.0378506081480057 0.8317160567595208 1.0 20.097462395611625 1.7049960125099644 1.4391079834818812 0.9272652072560544 1.1161121433643708 0.261955379392087 0.11405016912963427 0.527283282419121 2.1080231065170407 0.09464826128632245 0.03596183945471117 50.69860533430833 -1.7049960125099644 0.18884693610831638 MPSGEFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MPSGEFAR 8 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 ; 101.41 0.012593 531720000.0 462250.0 567230.0 548200.0 460550.0 419460.0 508710.0 520420.0 421030.0 643260.0 506710.0 False True 459761.2973608036 586109.9076522244 625381.7949601808 518855.5827787442 472875.7446657956 473544.07507453253 495245.2964025387 452449.39654701966 484737.1922423925 474371.33398374333 0.9692012658095389 1.2355508557612598 1.3183380827594708 1.093775162216116 0.9968472181795054 0.9982560942241945 1.0440034228955133 0.953787390033406 1.0218517804851261 1.0 18.85565730563388 3.441308555640438 4.543378978024509 1.0010607920836323 1.1847091580756415 0.45255803581434206 0.0847605050472536 0.16460453812439899 7.859040215818968 0.02362937892155511 0.03339684438131401 2762.5398763800795 -3.441308555640438 0.18364836599200918 MPTQSEEEKLS(ph)PSPTTEDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 MPTQSEEEKLSPSPTTEDPR 20 1 Q9BTC8;F6RRE2;E7EV10;E7EQY4;Q9BTC8-2 Q9BTC8 MTA3 Metastasis-associated protein MTA3 1 MPTQSEEEKLS(0.859)PS(0.141)PTTEDPR;MPTQSEEEKLS(0.982)PS(0.017)PTTEDPR;MPTQSEEEKLS(0.838)PS(0.161)PT(0.001)TEDPR 121.86 1.9087e-05 4317850000.0 6330200.0 5326300.0 4833700.0 4726100.0 4626700.0 6481700.0 6331800.0 5482700.0 8030600.0 6042200.0 True False 6296118.906551331 5503582.675683655 5514242.944726424 5324423.775422044 5215882.820400594 6033635.335280612 6025506.644175072 5891846.914586485 6051566.234526865 5656581.623012326 1.113060736353068 0.9729520481581606 0.97483662611588 0.9412794034052325 0.922090967304553 1.0666575216972636 1.0652204892901875 1.0415914252199676 1.0698274395807617 1.0 22.43149903839205 2.7128524018995392 24.86810020758174 1.0517611126514863 0.9812070713942264 0.27838064055340284 0.051083400615824434 880.8451553233358 852059.1927089747 0.016628757548046644 0.015683602971726655 516.2408912784879 -2.7128524018995392 -0.07055404125725995 MQAHIQDLEEQLDEEEGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MQAHIQDLEEQLDEEEGAR 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ; 196.3 2.0928e-21 106940000.0 72534.0 93643.0 101083.0 110215.0 101310.0 102500.0 111332.0 91285.0 116961.0 106593.0 False True 72143.48500328498 96759.850646611 115314.60777081353 124168.20769940151 114211.22798858458 95414.41625904656 105946.44583045888 98097.15023583763 88137.52874710447 99790.1434811414 0.7229520119581635 0.9696333452501442 1.1555711190314701 1.2442933076137639 1.1445141173704045 0.9561507071795946 1.0616924892034143 0.9830344642642617 0.8832288006857204 1.0 16.606609703597712 -0.6445199890515685 7.51861192532564 0.9999862699752962 1.024541627182833 0.0 0.14197669062445598 0.0 0.0 0.14239776985196378 0.033563476229388316 0.22671487258406642 0.6445199890515685 0.024555357207536765 MQAQMQMQMQGGDGDGGALGHHV ddPTM_BT-474_Trastuzumab_2h_R1 1 MQAQMQMQMQGGDGDGGALGHHV 23 0 Q15019-2;Q15019-3;Q15019;B5MCX3;H7C2Y0;H7C1T1 Q15019-2 SEPT2 Septin-2 0 214.24 7.031699999999999e-34 0.0 142660.0 111650.0 97922.0 116140.0 108200.0 141950.0 130680.0 97303.0 187260.0 127140.0 False True 141891.93441101615 115366.20275614975 111708.56644671794 130843.31209189743 121978.62864835521 132137.3306143577 124358.50915392117 104564.24395462242 141112.2821554429 119025.81634996977 1.1921105753546228 0.9692536148371399 0.938523841905549 1.0992851475782435 1.0248081667400906 1.1101568942475164 1.0448028248617238 0.878500540144785 1.1855602967723626 1.0 16.860914998227212 1.2412389966727577 0.006580586967683408 5.537821920421817e-08 2.0431089118238734 0.0010498096591908812 0.09783406220107994 13853.695473358508 78.33542254128317 12214.607622276128 12098.46654647743 17.427656712325184 -1.2412389966727577 2.043108856445654 MQAS(ph)IEK ddPTM_BT-474_Trastuzumab_2h_R1 4 MQASIEK 7 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK 121.6 0.0062027 1681780000.0 2300430.0 1904830.0 1784190.0 1816290.0 1907170.0 2391280.0 2239410.0 2235130.0 3568200.0 2452330.0 True False 2288044.7404818023 1968231.1150559501 2035388.4435425128 2046232.1277715932 2150036.794817777 2225976.4420676376 2131081.182923038 2401926.7503601685 2688864.921430375 2295820.1998546594 0.9966132106628606 0.8573106531515631 0.8865626514094468 0.8912858802710827 0.9365005129556262 0.9695778625035866 0.9282439378562614 1.0462172736838131 1.1712001321360435 1.0 21.13057822922311 1.6583698634931416 3.3006920058246783 1.092221396604427 0.919724830847003 0.6146887038695054 0.05432550974737318 0.1194881865652426 3.0630057007305114 0.031897763412268944 0.014058092941167721 45.53757122139769 -1.6583698634931416 -0.172496565757424 MQASIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 MQASIEK 7 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ;; 141.39 0.0059559 715860000.0 943290.0 1023910.0 1022210.0 885480.0 856750.0 989760.0 1005650.0 913560.0 1391270.0 1023470.0 False True 938211.431449371 1057990.2253833339 1166128.2827914015 997581.6772096904 965852.0341449017 921340.2208444289 957002.867543931 981734.4861636836 1048410.1505628723 958151.2683632483 0.9791892600132552 1.1041995771613748 1.217060730695924 1.0411525926525138 1.0080371085818298 0.961581173313373 0.9988014410070353 1.0246132511421928 1.0942010778254332 1.0 19.86989391420799 3.492286611972912 24.457117772150703 1.0138420007557398 1.1053134702698229 0.2764751401434079 0.061767563307340706 642.1167216326222 1035537.8354573229 0.0168814259169455 0.025210565405287565 3106.609113652251 -3.492286611972912 0.09147146951408303 MQEHSDQVPVGNIPR ddPTM_BT-474_Trastuzumab_2h_R1 4 MQEHSDQVPVGNIPR 15 0 P33993;P33993-3;P33993-2;C9J8M6 P33993 MCM7 DNA replication licensing factor MCM7 0 ;;; 173.03 9.9311e-07 2308250000.0 1806820.0 1974170.0 1905930.0 2057990.0 1924470.0 2243600.0 2177800.0 1808660.0 2253240.0 2199710.0 False True 1797092.281876575 2039879.0550390352 2174268.3773594624 2318531.322989532 2169539.8472726406 2088505.2128663103 2072451.4939960968 1943631.3933893878 1697959.1938691174 2059322.6245335208 0.872661845437479 0.9905582693732169 1.0558172631410676 1.125870854507184 1.0535211051566464 1.014170964755656 1.0063753339598986 0.9438207351456941 0.8245231580718152 1.0 20.973738437348164 1.6632020093740711 3.140555598232163 0.9054625445309575 1.0239419426483938 0.2642397338448258 0.07230081415962099 0.25712214338085254 5.927374135694059 0.04574247270038854 0.020003050680709476 46.04707088586998 -1.6632020093740711 0.11847939811743624 MQFS(ph)FEEYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MQFSFEEYEK 10 0 A0A1W2PR28;Q5JU85-3;Q5JU85;A0A1W2PR18 A0A1W2PR28 IQSEC2 IQ motif and SEC7 domain-containing protein 2 1 MQFS(1)FEEYEK 83.69200000000002 0.016186000000000002 161600000.0 272710.0 263760.0 269700.0 304250.0 282890.0 340550.0 358820.0 283610.0 382410.0 345850.0 True False 271241.7596609296 272539.092153713 307671.4157255758 342768.0188045444 318914.36467960395 317008.5800684712 341462.50577448733 304774.41834239935 288170.1795314692 323777.5569029178 0.8377410783362583 0.8417479418915739 0.9502555355244363 1.05865280497907 0.9849798353232616 0.9790937429413114 1.054620675505536 0.9413080426503546 0.8900251836104711 1.0 18.304643461105645 4.173780606415983 3.9219131069802535 0.9866161882833832 0.837194237026309 0.6083120782559601 0.04648445031697222 0.13756897255595943 4.161870858600182 0.012095021586097845 0.030247180681842272 14920.404814981512 -4.173780606415983 -0.14942195125707414 MQFS(ph)FEGPEK ddPTM_BT-474_Trastuzumab_2h_R1 5 MQFSFEGPEK 10 0 A0A0C4DGT3;A0A3B3IU98;Q6DN90-2;A0A3B3IRZ4;Q6DN90-3;A0A2R8Y7T6;Q6DN90;A0A2R8Y695 A0A0C4DGT3;A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 MQFS(1)FEGPEK;MQFS(1)FEGPEK;MQFS(1)FEGPEK;MQFS(1)FEGPEK;MQFS(1)FEGPEK 153.39 0.00012731 1807240000.0 2464580.0 4449620.0 2106290.0 2072320.0 2016720.0 2297880.0 2457550.0 2296960.0 4891730.0 2520250.0 True False 2451310.975120581 4597722.911847907 2402837.3237991207 2334675.4995202436 2273537.3379640523 2139032.964227686 2338668.917747315 2468370.8189265477 3686228.6873237547 2359405.4873054223 1.0389528159994745 1.9486785703371288 1.0184079577365484 0.989518551212059 0.9636060228717038 0.9065982832270962 0.9912111039540772 1.0461833848430904 1.5623548843796415 1.0 21.169991950704954 4.173535378777722 24.99992131052044 1.0465200907154115 1.4938337283673644 0.2954489277575584 0.2675075349214404 55.562551477386684 21361.334277732924 0.06216941625255989 0.13430139404053518 14911.9822745854 -4.173535378777722 0.44731363765195287 MQHLIAR ddPTM_BT-474_Trastuzumab_2h_R1 13 MQHLIAR 7 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;;;;; 148.54 0.0020771 5699293000.0 4449420.0 5573062.0 7584625.0 4255702.0 2282460.0 3512016.0 5446042.0 2834310.0 8905847.0 4198691.0 False True 4425464.817097033 5758557.999682878 8652474.273257684 4794473.436853044 2573117.751799674 3269238.6003164113 5182596.142559224 3045820.6045345548 6711120.339085803 3930726.9456997816 1.1258642175433975 1.465010945617259 2.2012402267533484 1.2197421757057436 0.6546162547909024 0.8317134834036134 1.3184828694928779 0.7748746342878599 1.7073483942780034 1.0 21.90636471742423 3.488582890523627 24.92579784627513 1.0200870493313354 1.605194995198966 0.3004045403388179 0.37358182798639605 593.3745484051483 1290419.8117436233 0.09934410850552339 0.14456889240571733 3080.228185404853 -3.488582890523627 0.5851079458676305 MQHNLEQQIQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MQHNLEQQIQAR 12 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 129.34 0.00023591 699900000.0 605720.0 597030.0 688400.0 581940.0 619740.0 822480.0 594120.0 506600.0 871900.0 658800.0 False True 602458.8708218191 616901.782637743 785320.7363199351 655613.5443323471 698660.2155132319 765623.8935096652 565380.1458411979 544405.0644626754 657031.9278614263 616754.8199729429 0.976820693267138 1.0002382837718342 1.2733110644427346 1.0630051409425691 1.1328005763195854 1.2413748035941625 0.9167016252357804 0.8826928413572163 1.0653048935884284 1.0 19.2343375597476 2.2160186607536456 24.996575976467593 0.9470842997041756 1.1150912417952725 0.3436975417852932 0.09907733318345109 245.0083736700173 271685.90655828937 0.037849602799826555 0.027973405097549895 164.44423800529933 -2.2160186607536456 0.1680069420910969 MQMELSHK ddPTM_BT-474_Trastuzumab_2h_R1 5 MQMELSHK 8 0 Q9Y6D9;C9JJ38 Q9Y6D9 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 0 ;;;; 93.551 0.005929 1620020000.0 2787390.0 2616230.0 2351350.0 2270830.0 2200070.0 2536630.0 2952680.0 2229600.0 2988130.0 2640480.0 False True 2772383.001948142 2703309.634005565 2682399.641699421 2558316.8451665556 2480235.8736634636 2361278.738684738 2809847.588067036 2395984.073679397 2251745.4003905994 2471962.305771335 1.1215312610048338 1.0935885339732323 1.085129670236789 1.0349335987824761 1.0033469636138108 0.9552244114612176 1.1366870690167217 0.9692640005413714 0.9109141329272735 1.0 21.237225313500367 5.059905502080762 0.35668367637371 0.9787787856934697 1.279508921441946 0.4328143463138172 0.05427046264835454 8.141131841775033 0.6974730409620798 0.050394435800666146 1.1061075115573067 114790.38225020844 -5.059905502080762 0.3007301357484763 MQMLEDEDDLAYAETEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 MQMLEDEDDLAYAETEKK 18 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 223.36 8.321900000000002e-19 480150000.0 390582.0 310150.0 279433.0 267892.0 268248.0 405831.0 380362.0 373806.0 636430.0 424618.0 False True 388479.14990973927 320473.15526036615 318774.7375248237 301807.0997324141 302407.7927695372 377776.8581934162 361962.43693605566 401701.30186840706 479590.3542250813 397518.515706241 0.9772605163298062 0.8061842218619825 0.8019116718588083 0.7592277788525557 0.7607388859164765 0.950337766084301 0.9105549116196121 1.0105222423532518 1.206460417002286 1.0 18.60066253457079 1.8946876262819021 1.3537449326907878 1.0972885533271572 0.8237320238351487 0.6181992606334341 0.0826751175418274 0.2699803161100519 0.9201317677621339 0.06154166129531325 0.026677299683917723 78.46710435486888 -1.8946876262819021 -0.2735565294920086 MQNGFGSPEPSLPGTPHS(ph)PAPPSGGTWK ddPTM_BT-474_Trastuzumab_2h_R1 2 MQNGFGSPEPSLPGTPHSPAPPSGGTWK 28 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 MQNGFGSPEPSLPGT(0.002)PHS(0.997)PAPPSGGTWK;MQNGFGSPEPSLPGTPHS(1)PAPPSGGTWK 209.36 1.0022999999999999e-25 1009810000.0 856440.0 814310.0 773020.0 728060.0 761670.0 1053640.0 940800.0 799460.0 1027340.0 940220.0 True False 851829.0221994303 841413.8160892096 881854.4967897095 820232.3213503256 858664.1597282123 980804.346801775 895289.9097949883 859119.7647756236 774165.8226507147 880214.3546371601 0.9677517955845758 0.9559192163323164 1.0018633440183164 0.9318551975767765 0.9755171058101737 1.114278972655564 1.0171271407679356 0.976034712737408 0.879519651744193 1.0 19.74749537399815 2.9849398891646666 24.862609799038754 1.000822744135549 0.9648327103883076 0.072193888327167 0.05569063510594256 1848.8261198724724 3052217.165156156 0.017626987563279333 0.019292872474505143 965.9171768380165 -2.9849398891646666 -0.03599003374724141 MQNHGYENPTYK ddPTM_BT-474_Trastuzumab_2h_R1 1 MQNHGYENPTYK 12 0 Q06481-5;Q06481-4;Q06481-2;Q06481-3;Q06481-6;Q06481 Q06481-5 APLP2 Amyloid-like protein 2 0 101.53 0.0026177 142520000.0 88617.0 158960.0 150040.0 154260.0 151920.0 133370.0 136870.0 115490.0 135340.0 121300.0 False True 88139.89591827437 164250.8875066509 171164.32782894105 173789.30018336602 171266.1114996128 124150.44581921022 130249.07520582495 124108.45024633732 101987.27046308709 113558.53014984535 0.7761627048357354 1.4463984985532554 1.507278472194756 1.5303940615825478 1.5081747824106198 1.0932727436273468 1.1469774664567753 1.0929029292873984 0.8981031220508976 1.0 16.79307655514176 2.646481531816758 6.239785081483872 1.0605500316188154 1.376573629049986 0.3351163654370388 0.21507442614360323 0.2870851442124036 16.118533493108963 0.07114299758029685 0.06698932025059663 443.079372331802 -2.646481531816758 0.3160235974311705 MQNLNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MQNLNDR 7 0 K7EMD9 K7EMD9 KRT13 0 161.68 0.0030246 656900000.0 291240.0 486610.0 763550.0 550560.0 584750.0 497900.0 1029300.0 544480.0 557900.0 532830.0 False True 289671.99619980605 502806.5196880433 871051.2031044255 620260.8395498107 659214.4464152087 463481.34493053006 979508.8266921581 585111.8624134182 420413.02047699253 498824.3332212858 0.5807094339788418 1.0079831439678204 1.7462083244403683 1.2434454340755947 1.3215362653986078 0.9291474253821594 1.963634813816578 1.1729817962866982 0.8428077631298936 1.0 18.928172317634512 4.535774238207418 4.476357113083709 1.3055352505419704 0.6358945416590824 0.28825085515034543 0.3328462056784381 0.24969836435263343 9.872544371828766 0.07756274411342935 0.3391165308513485 34337.94006120764 -4.535774238207418 -0.669640708882888 MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIK 28 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 1 MQNNS(0.007)S(0.037)PS(0.95)IS(0.005)PNTSFTSDGSPSPLGGIK 208.26 1.2325e-25 142750000.0 258660.0 216100.0 215720.0 208520.0 242070.0 260280.0 243190.0 242370.0 319970.0 304650.0 True False 257267.4032998277 223292.75786479164 246091.50092814697 234918.6106199626 272896.17963870015 242287.4562332158 231425.97062398287 260456.88012992244 241117.68087833578 285206.9761760128 0.9020375544427692 0.7829147830065301 0.8628523194898078 0.8236776455109738 0.9568355700748529 0.8495144806124603 0.8114316617597759 0.9132205797420044 0.845412984321717 1.0 18.121649745038557 -4.99999996635395 0.25519883471396365 1.8702315508578384 0.8494822771780073 0.41549539713483974 0.04915661993505483 178.19818701480517 1.7590330118686053 81.06556816309157 0.06489524554669636 1.000000077472897e-05 4.99999996635395 -1.0207492736798311 MQNS(ph)DDERPQAS(ph)DEEHRHS(ph)DDEEEQDHK ddPTM_BT-474_Trastuzumab_2h_R1 1 MQNSDDERPQASDEEHRHSDDEEEQDHK 28 2 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 3 MQNS(1)DDERPQAS(1)DEEHRHS(1)DDEEEQDHK 92.967 0.00093076 194970000.0 79993.0 53583.0 56344.0 44439.0 65761.0 76748.0 67672.0 38041.0 81937.0 61574.0 True False 79562.32657605787 55366.47776339248 64276.74544917263 50064.97284356668 74135.27355401553 71442.59140535904 64398.446827855565 40879.81258828393 61744.7242495489 57644.29460384641 1.380228990966765 0.9604849559508369 1.115058235874113 0.8685156646920962 1.2860817200297345 1.239369687778119 1.1171694834749262 0.7091736115295643 1.071133312912964 1.0 15.81489020244703 1.8752044493158924 10.414157150377727 0.8976224300941137 1.1304983697504523 0.2505225760705698 0.16501931419008353 0.5127635984864177 41.05103788126585 0.06751775919239031 0.0429695877024391 75.02473140981425 -1.8752044493158924 0.23287593965633857 MQNT(ph)DDEERPQLS(ph)DDER ddPTM_BT-474_Trastuzumab_2h_R1 3 MQNTDDEERPQLSDDER 17 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 2 MQNT(1)DDEERPQLS(1)DDER;MQNT(1)DDEERPQLS(1)DDER;MQNT(1)DDEERPQLS(1)DDER 215.34 1.2936000000000002e-14 3811000000.0 3323570.0 3360900.0 2764070.0 3215000.0 3173620.0 3118140.0 3084530.0 3125560.0 3192460.0 3183130.0 True False 3305676.268403338 3472765.524793046 3153227.030272872 3622018.6703586215 3577761.6954805264 2902590.3211120325 2935319.499851124 3358805.158472093 2405721.009772324 2979979.9181853 1.1092948137772602 1.1653654118943977 1.0581370065718676 1.2154506975886936 1.2005992636551905 0.9740301615453855 0.9850131814440639 1.1271234205220697 0.80729436970076 1.0 21.50687117785319 2.7322750984909114 24.85085859990971 0.9986506461742778 1.1491941508340218 0.5002862060969331 0.08431710413350436 450.6251434676478 1781617.9302129757 0.027030673835491893 0.026053615592286097 539.8524771348657 -2.7322750984909114 0.15054350465974398 MQNTDDEERPQLS(ph)DDER ddPTM_BT-474_Trastuzumab_2h_R1 1 MQNTDDEERPQLSDDER 17 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 MQNTDDEERPQLS(1)DDER 104.63 0.00050928 613890000.0 689870.0 860660.0 719350.0 734490.0 796740.0 822080.0 747030.0 690690.0 668270.0 827190.0 True False 686155.8165717621 889306.5478200436 820628.2272977135 827476.3586910431 898200.1163520383 765251.5445681667 710893.3049682712 742232.7950527545 503583.8128592223 774398.0260070113 0.8860505754511695 1.1483843165323253 1.0596982426841615 1.0685414101036865 1.1598688093038942 0.9881889143157995 0.9179947276387231 0.9584642136549485 0.6502906721700022 1.0 19.56271574952669 2.0829425304168185 1.5033635053487775 0.8548127325944865 1.067835419107916 0.3746968978237807 0.1110075381559865 0.4030653941299675 1.7223702730780017 0.06725162821342129 0.034635445460080405 121.04379473864469 -2.0829425304168185 0.21302268651342948 MQQENMKPQEQLTLEPYER ddPTM_BT-474_Trastuzumab_2h_R1 4 MQQENMKPQEQLTLEPYER 19 1 P22087;M0QXL5;M0R299 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ;;; 274.39 1.9103e-39 2939220000.0 1018514.0 930763.0 975227.0 898779.0 1108775.0 1084790.0 1081495.0 1064048.0 1388382.0 1122230.0 False True 1013030.4337915434 961742.8837968857 1112530.4847749588 1012564.3292461126 1249970.9240256918 1009801.0206209857 1029178.9551378953 1143452.664886263 1046233.8594656533 1050608.3206105602 0.9642322585098331 0.915415255076192 1.0589393429974099 0.9637886064500818 1.1897592085500257 0.9611584077633618 0.9796028976239106 1.0883719864523311 0.9958362588044565 1.0 20.00279348483469 4.238788524598052 24.999999800835038 1.033913691887105 0.939823740215154 0.2217746346593773 0.06695664634552734 7.718872038506191 846219.9519981924 0.01576868164668037 0.038079621549755596 17329.599445664677 -4.238788524598052 -0.094089951671951 MQQHEQALADCR ddPTM_BT-474_Trastuzumab_2h_R1 2 MQQHEQALADCR 12 0 Q9UNE7;Q9UNE7-2 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 ; 148.68 6.565399999999999e-05 642160000.0 556740.0 555020.0 565540.0 550830.0 544370.0 594190.0 593420.0 494760.0 582120.0 564930.0 False True 553742.5736996289 573493.5051833251 645163.116238199 620565.0215221274 613692.2927662213 553115.0438728085 564714.0075154564 531681.503540374 438664.3260083653 528875.6837390934 1.047018402859306 1.084363533465537 1.2198766857212384 1.1733665218540592 1.160371542188296 1.0458318672591362 1.0677632284452747 1.0053052539331053 0.8294280480188774 1.0 19.012569120159277 1.8415402364017017 1.3298474382032364 0.9216486513948335 1.1341529652617441 0.6080348702090732 0.0654098971006303 0.2878527226539062 0.9508442800483903 0.05190415583433495 0.02161855851289676 69.42889230332217 -1.8415402364017017 0.2125043138669106 MQQHFEFEYQTK ddPTM_BT-474_Trastuzumab_2h_R1 1 MQQHFEFEYQTK 12 0 P08243-2;P08243;P08243-3;F8WEJ5;C9J057;C9JT45;C9JM09 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 84.566 0.0080753 0.0 51436.0 55890.0 55527.0 48136.0 60117.0 61091.0 55725.0 69816.0 73317.0 74559.0 False True 51159.074291076846 57750.264863781544 63344.71895066395 54230.01266450473 67772.54360862456 56867.92296274548 53029.36885982751 75026.02443846464 55249.007747466676 69800.58078682865 0.7329319285654218 0.8273608072137847 0.9075099123332377 0.7769278142559226 0.9709452678567572 0.8147199109477387 0.7597267567411723 1.0748624666547477 0.7915264762079479 1.0 16.09095142020775 7.999999999943244 0.08762794720923471 1.085904768270749 0.2547572286776698 0.22596119129843928 0.09674494646917424 232.617548387442 1.4690441772872773 1.8829493362896632 23.269252303931047 99999999.98693135 -7.999999999943244 -0.8311475395930792 MQQMSEQVHTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 MQQMSEQVHTLR 12 0 Q08379;Q08379-2;B7ZC06 Q08379 GOLGA2 Golgin subfamily A member 2 0 ;;; 278.27 6.2825e-28 1695280000.0 1169630.0 1470330.0 1412590.0 1477380.0 1445890.0 1407780.0 1410340.0 1325710.0 1444060.0 1407750.0 False True 1163332.84203811 1519269.0452167438 1611470.3935476125 1664416.1565208163 1630015.521038543 1310463.4821576637 1342116.466178002 1424641.2120189774 1088190.76241263 1317906.18976459 0.882712935922935 1.1527899762638811 1.2227504552774429 1.262924606809929 1.236822115032105 0.9943526271712436 1.0183702577629874 1.0809883306439685 0.8256966777028396 1.0 20.32981625046064 2.7215181162972386 23.50302803442133 0.9993471854490663 1.161803624317004 0.33737673032725646 0.11608084933095791 471.29092840769516 649947.6665973475 0.03862844391858929 0.03652501062680708 526.6451830792671 -2.7215181162972386 0.1624564388679377 MQQNIQELEEQLEEEESAR ddPTM_BT-474_Trastuzumab_2h_R1 4 MQQNIQELEEQLEEEESAR 19 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;; 251.68 1.82e-30 494293000.0 443862.0 471182.0 467070.0 507697.0 510891.0 543970.0 536406.0 478249.0 520540.0 562349.0 False True 441472.29630970466 486865.0080344656 532829.3961547824 571971.3881446542 575949.9405618008 506366.63426764496 510457.99251008825 513938.3688792149 392259.8918786415 526459.4053687985 0.8385685426218985 0.9247911673140382 1.012099680851027 1.0864491778696086 1.0940063653309278 0.9618341492311681 0.9696056092919436 0.9762165204726235 0.7450904815801576 1.0 19.0059627655529 -0.9751810739150512 7.186377933142381 0.9999999976784711 0.9666698705390167 0.007680470081124491 0.10000493784425639 2.193203432412088e-09 4.0691864995699365e-10 0.09812225692471163 0.023127636890692478 0.10588121740004655 0.9751810739150512 -0.03333012713945449 MRDAGDPS(ph)PPNK ddPTM_BT-474_Trastuzumab_2h_R1 3 MRDAGDPSPPNK 12 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;E9PMZ7;C9JMU2 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK 66.387 0.035243000000000003 1363620000.0 1203350.0 1126490.0 986930.0 877380.0 936490.0 1262450.0 1267430.0 1190780.0 1777030.0 1349540.0 True False 1196871.2973047525 1163984.5386724153 1125881.1654506577 988456.2180402009 1055746.4504888928 1175179.8029876414 1206119.5688472174 1279642.0502583212 1339104.7674820414 1263411.2018006758 0.9473331371440372 0.9213030065060744 0.8911438839912108 0.782370946712681 0.8356317001022241 0.9301641471222649 0.9546532175179359 1.01284684545658 1.0599120583809003 1.0 20.26889283809936 2.0777176796807493 1.6944180264187394 1.0284144934078865 0.8757096404881144 0.6591528361435712 0.045862158338764294 0.24393399632731205 1.3292802784427238 0.030343475968001594 0.016071800624986456 119.59628231170029 -2.0777176796807493 -0.1527048529197721 MREDYDS(ph)VEQDGDEPGPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 MREDYDS(1)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR 288.45 4.969399999999999e-41 3069800000.0 1299350.0 1440190.0 1313680.0 1461480.0 1395770.0 1520860.0 1451740.0 1362180.0 1646880.0 1468710.0 True False 1292354.4439713557 1488125.8535367623 1498634.7252887443 1646503.2181510811 1573513.0361230564 1415726.5279193504 1381513.7900146418 1463832.7886098833 1241028.4910613925 1374975.670374107 0.9399107721082283 1.0822924984060764 1.0899354494621651 1.1974780744324707 1.14439336638948 1.0296375117198662 1.0047550802398968 1.064624502200537 0.90258214585261 1.0 20.39097466029517 2.5543964775812174 5.8460399586424145 1.006906294951383 1.0960025447190227 0.2857451822757928 0.07177575930906906 0.3325530766544216 19.458069479806845 0.024533340420900124 0.02290800474437849 358.42350097755417 -2.5543964775812174 0.08909624976763975 MREDYDSVEQDGDEPGPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 0 ;; 157.51 5.4944e-09 1335640000.0 372014.0 409496.0 388470.0 390048.0 422347.0 414003.0 413568.0 364366.0 468187.0 418536.0 False True 370011.11795864126 423125.8268144409 443163.1993582292 439428.03680747777 476130.38700320607 385383.94706823473 393562.1358568173 391556.8411330585 352808.5872343827 391824.67415330315 0.9443282732467041 1.0798856088600766 1.1310242273942135 1.1214914878881508 1.2151618272434725 0.9835622218049789 1.004434283540894 0.9993164467734876 0.9004246299617792 1.0 18.579848724920723 2.596251613096141 14.404470513967798 0.9813143216839897 1.100445284335509 0.43609840676708633 0.06861783206313214 1.0277016077272767 119.37433458632903 0.022756357679141977 0.02145380734158588 394.6859012947233 -2.596251613096141 0.11913096265151935 MREEFDK ddPTM_BT-474_Trastuzumab_2h_R1 7 MREEFDK 7 1 O43809;H3BND3;H3BV41 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 ;;;;;; 158.07 0.0013079 7000460000.0 5190360.0 5662530.0 5112940.0 4996650.0 4672280.0 5755860.0 5816310.0 5371460.0 7602260.0 5955130.0 False True 5162415.678463208 5851003.887978325 5832797.509528839 5629225.377681935 5267267.163226772 5357970.946037037 5534952.864838102 5772305.620921214 5728784.888064929 5575068.504956704 0.9259824653048455 1.0494945277849574 1.0462288498057006 1.0097141178941715 0.9447896754172131 0.9610592123259744 0.9928044579034436 1.035378420155582 1.0275721065977141 1.0 22.41055810191839 1.752506747482113 24.98141979851207 1.0238334848468336 0.9923656176212479 0.11627151754273213 0.03851195308280078 10.19634489956894 18290.361507914804 0.01883809766545374 0.01044699155115588 56.559654449742105 -1.752506747482113 -0.0314678672255857 MREESGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 MREESGAR 8 1 F8VZX2;F8W1G6;F8W0G4;P57721;P57721-4;E9PFP8;P57721-5;P57721-3;P57721-2;F8VTZ0;J3QT27;F8VXH9;Q15366;Q15366-6;Q15366-2;Q15366-3;Q15366-5;Q15366-4;Q15366-8;Q15366-7 F8VZX2;Q15366;Q15366-2;Q15366-5 PCBP2;PCBP3 Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 0 ;; 134.66 0.00079086 278906000.0 167311.0 232384.0 212752.0 253772.0 226939.0 182039.0 233121.0 187564.0 275020.0 228137.0 False True 166410.21616599947 240118.76096090526 242705.63232646565 285899.5091801705 255838.33647716342 169455.07240371287 221844.04662129865 201560.97811069354 207245.00607919437 213577.10134208796 0.7791575741046277 1.1242720284713732 1.136384147932237 1.338624353376925 1.19787343713119 0.793414047380929 1.0387070768694884 0.9437387100214076 0.9703521809074868 1.0 17.70439745127916 2.758621623258516 24.79603607283764 0.9531135064254447 1.1293452882264257 0.24718129094253505 0.1437407952958739 1045.6920511513804 1292506.5406243089 0.044932431771837686 0.047600665414850155 573.6164841475535 -2.758621623258516 0.17623178180098098 MREEVITLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 MREEVITLIR 10 1 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 179.19 1.9455000000000003e-06 492870000.0 190072.0 216804.0 199308.0 217429.0 219160.0 208874.0 196595.0 174580.0 223980.0 214530.0 False True 189048.67347098465 224020.19007921428 227368.83398380844 244955.4891065023 247068.72693690885 194435.03201650825 187084.94878416872 187608.04609927736 168783.13017823405 200838.51173162632 0.9412969247830514 1.1154244678857452 1.132097783554748 1.2196639329504093 1.2301860076869042 0.9681162758083229 0.9315192946368971 0.9341238614134505 0.8403922570576166 1.0 17.615676413829487 2.58365106926461 5.533447616254062 0.9257810621452085 1.1317644753237515 0.583967278146738 0.08189069640625309 0.16559477337555772 7.18594187823445 0.027921118450679832 0.026144352073543663 383.3990825154178 -2.58365106926461 0.20598341317854296 MREHLELFWSR ddPTM_BT-474_Trastuzumab_2h_R1 1 MREHLELFWSR 11 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 98.803 0.0031537 297620000.0 98801.0 158180.0 165330.0 169200.0 116450.0 140680.0 174300.0 110640.0 230760.0 149060.0 False True 98269.06639382293 163444.92567817075 188607.02692587866 190620.70265153324 131279.21724677412 130955.12272509915 165868.44310933948 118896.5186185362 173892.2900255796 139546.8631833136 0.7042011848359019 1.1712547451780684 1.3515676570824664 1.365997760917974 0.940753623922891 0.938431145908826 1.1886217957579521 0.8520185685746988 1.2461210955143338 1.0 17.090390169455336 3.1947820369719473 24.999986790861524 1.0158749619194358 1.1644222293057698 0.07469832366783269 0.20226293493683664 311.37139977328115 177809.31557994802 0.059061470936895205 0.07059233313395355 1565.964948842925 -3.1947820369719473 0.14854726738633395 MRHCSDKELK ddPTM_BT-474_Trastuzumab_2h_R1 1 MRHCSDKELK 10 2 Q8NG31-2;Q8NG31;H0YEY7;H0YCZ2 Q8NG31-2 CASC5 Protein CASC5 0 59.426 0.058873 475060000.0 95534.0 654950.0 631990.0 1161000.0 812860.0 267650.0 385290.0 170490.0 30302.0 229580.0 False True 95019.6555588252 676749.6148243649 720968.6986444442 1307982.4809599894 916372.9028013123 249147.9854803301 366652.05074926786 183212.82953067828 22834.4781259972 214928.00784667343 0.44209992225215644 3.148726969577406 3.3544660180295023 6.0856772184530055 4.263627211652376 1.1592159997038112 1.7059296013706702 0.8524381320343307 0.10624244999417196 1.0 17.713493970923444 2.7246056861370187 20.87585205494827 1.008968121812391 3.5818141787967233 0.45969252122762094 1.3482982933150713 85.29055245933313 127588.8315112779 0.4624635798350686 0.43931710271064267 530.4026511125091 -2.7246056861370187 2.572846056984332 MRPFEGFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 MRPFEGFQR 9 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ; 147.75 8.3581e-05 1046560000.0 479150.0 528760.0 615290.0 480680.0 412200.0 483130.0 436000.0 380930.0 727900.0 444220.0 False True 476570.3096385693 546359.4569578303 701917.4838034469 541534.038714769 464691.2266991865 449732.360265689 414909.0143182559 409356.93092334596 548518.7983602857 415869.4992841236 1.1459611980655853 1.3137762156117045 1.6878311225317686 1.3021730125603437 1.1173967494589154 1.0814266519661981 0.9976904173844894 0.9843398749559937 1.3189685689970152 1.0 18.665771353109125 3.266262969555808 3.5071985322285824 1.0658780873390732 1.3911893290154564 0.4457770529121382 0.15374604352752994 0.20240174083979723 5.205592684051334 0.04578070036909487 0.060850736375661824 1846.1329323568384 -3.266262969555808 0.32531124167638326 MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR 32 1 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ;; 261.92 1.9350999999999996e-59 1993510000.0 383142.0 446277.0 444197.0 463369.0 415500.0 494572.0 426451.0 407174.0 553369.0 499292.0 False True 381079.2060430777 461131.060164857 506736.0765704619 522031.4678897065 468411.4621385542 460383.4017372607 405821.93592897785 437559.3914676776 416998.6247147035 467426.7570946122 0.8152704145816435 0.9865311584452559 1.0840972812942606 1.1168198224990395 1.0021066509971799 0.984931638485715 0.8682043331268584 0.9361025761285439 0.8921154349542263 1.0 18.834380795683824 2.413707611707313 6.462986216596905 0.9190071700339504 1.0095836973448087 0.16468653253325005 0.08097705059486841 0.33779219624181317 26.52020035809679 0.02940920948996637 0.024576948084029344 259.2433421446613 -2.413707611707313 0.0905765273108583 MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVK 41 2 A0A2R8Y5Y7;P32969;H0Y9V9 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 202.52 1.4304e-35 191790000.0 107290.0 114720.0 112690.0 102890.0 98708.0 128570.0 126210.0 123930.0 204500.0 139590.0 False True 106712.36256103968 118538.38585029558 128555.77248096105 115915.86345045052 111277.87871184705 119682.25852122548 120104.7401309796 133178.28590378864 154103.7151596074 130681.24669098828 0.8165851280358081 0.9070803106936531 0.9837354305698264 0.8870122254384953 0.8515214044060748 0.9158334615848037 0.9190663784757264 1.0191078618855307 1.1792335860095091 1.0 16.995692597612287 1.6208862385554366 2.9851415298498485 1.09255250317143 0.8983147726476938 0.6502552980356313 0.05804989723376498 0.12415796395475363 2.596846251073422 0.036650258494036046 0.01510224086034373 41.77209322349669 -1.6208862385554366 -0.19423773052373627 MRPLTEEETR ddPTM_BT-474_Trastuzumab_2h_R1 3 MRPLTEEETR 10 1 Q9Y221;J3QLW7;Q9Y221-2 Q9Y221 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog 0 ;; 155.97 1.0737e-05 758100000.0 623330.0 803570.0 774700.0 827150.0 799370.0 781990.0 725420.0 678710.0 864260.0 769600.0 False True 619974.0605384728 830316.3416816767 883771.0261868874 931867.1051904006 901165.031262807 727932.8719064572 690328.6632264891 729358.7866195473 651274.7034906725 720483.4691122911 0.8604972731745586 1.1524432929803523 1.2266360910067557 1.2933913755697346 1.2507782203152196 1.0103394499853613 0.9581464291984995 1.0123185581456733 0.903941216434999 1.0 19.45860580379129 2.602513337654113 5.588797674928091 0.9751165379051763 1.1673362525326154 0.3878037535582626 0.11327183295727136 0.24841449244618535 10.31150205900223 0.03878341460250104 0.0363847456147144 400.41776540516 -2.602513337654113 0.19221971462743914 MRT(ph)PPALGSQGSEVTGPTFADGELIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MRTPPALGSQGSEVTGPTFADGELIPR 27 1 Q86YS3-2 Q86YS3-2 RAB11FIP4 Rab11 family-interacting protein 4 1 MRT(0.999)PPALGS(0.001)QGSEVTGPTFADGELIPR 145.54 2.5579e-07 391310000.0 74958.0 75741.0 75640.0 94139.0 82801.0 71178.0 64547.0 66906.0 87007.0 69510.0 True False 74554.4344566167 78261.99339859864 86289.45452533393 106056.98774771075 93345.2165500227 66257.63239498947 61424.61501651477 71898.86546178395 65565.29068406837 65073.81228949493 1.145690283595883 1.2026649529988076 1.3260242713529158 1.6297952127945619 1.4344513294342787 1.0181919586980408 0.9439221839847662 1.1048817171172682 1.007552629503048 1.0 15.989789454719862 2.730244177893688 24.417285784060642 1.022318477017219 1.354131255728173 0.6286156448271873 0.1277957235489812 332.79061450352026 977079.9134588386 0.04578745292378458 0.043862087010810784 537.3338222280761 -2.730244177893688 0.33181277871095416 MS(ph)CFSRPSMS(ph)PTPLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 MS(0.426)CFS(0.14)RPS(0.438)MS(0.892)PT(0.103)PLDR 56.959 0.021644 0.0 112050.0 150050.0 128690.0 124150.0 110450.0 131030.0 117030.0 128850.0 173130.0 144700.0 True False 111446.73524992526 155044.32354285946 146808.43340646802 139867.37727061356 124515.15281156023 121972.20451144259 111368.81180198489 138465.44128704254 130464.43132314345 135465.1221160974 0.8226968942929258 1.1445331545191548 1.0837360282349953 1.032497332787574 0.9191676120503347 0.9003956339913752 0.8221216654316282 1.0221482779041369 0.9630850309301887 1.0 17.047561926552973 3.245029486365036 23.94810196288762 0.9349865191217758 1.0341900011637886 0.154908464827347 0.09282312029070973 145.52018116851772 538716.7497111006 0.025676619813008436 0.03391697602642058 1758.0429719962544 -3.245029486365036 0.09920348204201279 MS(ph)DEFVDSFK ddPTM_BT-474_Trastuzumab_2h_R1 6 MSDEFVDSFK 10 0 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 MS(1)DEFVDSFK;MS(1)DEFVDSFK;MS(1)DEFVDSFK;MS(1)DEFVDSFK;MS(1)DEFVDSFK;MS(1)DEFVDSFK 245.13 1.7137e-12 774902000.0 2327130.0 1793140.0 1703210.0 1512562.0 1573238.0 2265090.0 2153520.0 2043740.0 2647950.0 2095820.0 True False 2314600.9906484485 1852823.5809239778 1943007.1634332915 1704052.1941135237 1773580.5339878087 2108509.65974833 2049346.0103547005 2196254.256701439 1995398.2032121401 1962062.9732782245 1.179677218403037 0.9443242169889537 0.9902878704177906 0.8685002557621201 0.9039366004774565 1.0746391366967296 1.044485339290942 1.119359718119509 1.0169898878822523 1.0 20.903939915559324 2.7148050549152694 24.64955137779669 1.0628638738326401 0.9701828196862495 0.1541334683242609 0.08331457856494387 1015.1523741016822 1053353.9046062608 0.027134639014953884 0.02559525979952308 518.5672134477007 -2.7148050549152694 -0.0926810541463906 MS(ph)DEFVDSFKK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSDEFVDSFKK 11 1 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 MS(1)DEFVDSFKK 92.935 0.005895399999999999 154810000.0 213820.0 187140.0 150810.0 167820.0 167560.0 243870.0 247540.0 210050.0 351310.0 250000.0 True False 212668.8168776355 193368.84177148095 172042.73713598124 189065.9947930279 188897.77279407007 227011.84090823086 235565.54450536938 225724.99761228776 264734.35781282 234044.7859642317 0.908667185220426 0.8262044419183637 0.7350846823063769 0.8078197256738813 0.8071009658080514 0.9699504305253966 1.0064977245054718 0.9644521525328258 1.1311269196711713 1.0 17.836425099570697 2.645725713249082 3.124504657910478 1.01440095089165 0.8111502521501924 0.7541402548037828 0.0567933518815065 0.13372378226468293 2.5202142951817503 0.019937959834473606 0.018821574261936428 442.3089357020529 -2.645725713249082 -0.20325069874145762 MS(ph)ESPTPCSGSSFEETEALVNTAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSESPTPCSGSSFEETEALVNTAAK 25 0 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;O95359-2;Q4VXL4;H0Y911 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 1 MS(0.327)ES(0.327)PT(0.327)PCS(0.005)GS(0.005)S(0.005)FEET(0.005)EALVNTAAK 94.201 0.006983199999999999 34307000.0 10367.0 13569.0 10253.0 7643.3 12591.0 12016.0 12381.0 11832.0 15654.0 11003.0 True False 10311.185223881974 14020.63596236628 11696.533279326399 8610.9409963148 14194.389217296117 11185.362202621503 11782.08372998698 12714.963921678604 11796.28145285328 10300.779119857762 1.001010224945427 1.3611238333746432 1.135499862993656 0.8359504554092121 1.3779918054870515 1.085875356851255 1.1438051037589545 1.2343691456471284 1.1451834191952044 1.0 13.33046584218559 3.166576133172538 24.74387341656661 1.174960394488911 1.1068226651456536 0.05219125308270567 0.1533679695948082 148.51982968540779 51048.37663313301 0.04351594358087502 0.05201152273609664 1467.493320500469 -3.166576133172538 -0.06813772934325746 MS(ph)GFIYQGK ddPTM_BT-474_Trastuzumab_2h_R1 8 MSGFIYQGK 9 0 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;F6SJA5;Q15052-2;Q15052 B1ALK7;Q15052-2 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK 159.94 6.8889e-05 8900200000.0 14471990.0 11636220.0 9535070.0 9002300.0 7132220.0 10779020.0 10936660.0 9644550.0 14795700.0 12128960.0 True False 14394074.413829254 12023524.548456484 10877524.975685837 10141990.256973386 8040465.941020069 10033891.71848379 10407611.973701583 10364275.29503257 11149497.987222526 11354879.38867491 1.2676554211738758 1.058886152542357 0.9579604153730444 0.8931834420970397 0.7081066795865257 0.883663434460727 0.91657617993564 0.9127596111121757 0.9819124981937523 1.0 23.43680904605689 4.607014416270051 1.545312584888944 0.8916837149051993 1.3514278560306736 0.6972055369917228 0.07471018739620426 0.4614390302943527 1.265391950427285 0.02100427238394854 0.2986657828296749 40458.93216910495 -4.607014416270051 0.45974414112547435 MS(ph)GFIYQGKLPTTGMTITK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSGFIYQGKLPTTGMTITK 19 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;F6SJA5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 MS(1)GFIYQGKLPTTGMTITK;MS(1)GFIYQGKLPTTGMTITK 125.78 1.614e-05 567780000.0 634170.0 656970.0 710740.0 648810.0 553920.0 805720.0 924420.0 743170.0 1169080.0 834200.0 True False 630755.6991829103 678836.8493032483 810806.0141371737 730949.2794760127 624458.4286589355 750022.4728608687 879702.2729726648 798629.1191407946 880975.8988694074 780960.6418054482 0.8076664372287832 0.8692331123549235 1.0382162310545229 0.9359617378235378 0.7996029444138104 0.9603844710111693 1.1264361171120516 1.0226240304434546 1.1280669622898547 1.0 19.574890316910473 2.431034163973975 5.943949392086871 1.066556428594276 0.8977496754157814 0.569952384928609 0.07318888283114952 0.14857403461589164 12.465045503400741 0.026075254287901393 0.021890768704121818 269.7951659698128 -2.431034163973975 -0.16880675317849447 MS(ph)GGSTMSSGGGNTNNSNSK ddPTM_BT-474_Trastuzumab_2h_R1 3 MSGGSTMSSGGGNTNNSNSK 20 0 Q86U70-2;Q86U70;A0A6E1WJ75;Q86U70-3 Q86U70-2 LDB1 LIM domain-binding protein 1 1 MS(0.747)GGS(0.238)T(0.007)MS(0.007)S(0.001)GGGNTNNSNSK;MS(0.999)GGS(0.001)TMSSGGGNTNNSNSK;MS(0.987)GGS(0.006)T(0.006)MSSGGGNTNNSNSK 375.32 2.519299999999999e-112 374111000.0 601679.0 502523.0 502086.0 484702.0 513167.0 661643.0 643790.0 617785.0 759940.0 664811.0 True False 598439.6271168214 519249.1742734319 572775.344590254 546065.2235023837 578515.7756708912 615905.176750091 612647.418183371 663887.2537486663 572662.9696742898 622382.1928066676 0.9615307668397839 0.8342931084384796 0.920295199975583 0.8773792531561222 0.929518521508531 0.989593185455117 0.9843588477694113 1.0666874171878684 0.9201146438522506 1.0 19.24744125790194 2.807639047073213 2.286294705702471 1.0041809770252839 0.8951081559746716 0.48427827789970657 0.04532102104152989 0.22512290688228848 2.3150492515046577 0.015057879129310999 0.01563501084475963 642.1537855109159 -2.807639047073213 -0.10907282105061222 MS(ph)NELENYFK ddPTM_BT-474_Trastuzumab_2h_R1 4 MSNELENYFK 10 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 MS(1)NELENYFK;MS(1)NELENYFK;MS(1)NELENYFK;MS(1)NELENYFK 167.32 5.5352e-06 250191000.0 389658.0 384845.0 365557.0 320250.0 324695.0 403106.0 357069.0 355041.0 405901.0 341686.0 True False 387560.12462307385 397654.33318128483 417024.2481215957 360793.6171640277 366042.98363195633 375240.2310294558 339796.20833395724 381535.96228166815 305872.13734474295 319879.30694789795 1.211582356861239 1.2431386605637949 1.3036924835826307 1.127905460989366 1.144315920665595 1.173068163144967 1.0622638006068439 1.192749746528033 0.9562110793073698 1.0 18.287168141697368 2.2665884756009773 0.31793475334099636 0.9806450400253777 1.284279810849992 0.6135702534020033 0.06400024456277796 1.218361637648769 0.3172694151294183 0.0886533488795644 0.1324742607544191 184.7517137568183 -2.2665884756009773 0.3036347708246143 MS(ph)PGVAGSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSPGVAGSPR 10 0 Q15596;E7EWM1 Q15596 NCOA2 Nuclear receptor coactivator 2 1 MS(1)PGVAGSPR 65.695 0.07229 0.0 207910.0 168750.0 135380.0 167890.0 171260.0 208070.0 192940.0 146400.0 260440.0 197460.0 True False 206790.6356609725 174366.74173847065 154440.32725594554 189144.85678585037 193068.9458624518 193686.61064409566 183606.7550976246 157325.11140413675 196258.05171720372 184857.93374598896 1.11864625699604 0.9432472721352921 0.8354541464699055 1.0231903654497838 1.0444179589702949 1.047759253385565 0.9932316746000007 0.8510595580945705 1.0616696169874944 1.0 17.49605743697939 1.3784105080693996 0.0024167928388258144 2.5367732340087e-05 1.954491672745417 0.0 0.08712966940583318 249471.0883712806 575.5911235829973 232956.74498278572 232503.89797039563 23.900693802440784 -1.3784105080693996 1.9544663050130768 MS(ph)PKPELTEEQKQEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSPKPELTEEQKQEIR 16 2 P41208 P41208 CETN2 Centrin-2 1 MS(1)PKPELTEEQKQEIR 117.37 0.00018529 463370000.0 267940.0 188220.0 185650.0 159430.0 147250.0 216050.0 235120.0 232380.0 437820.0 235170.0 True False 266497.4408109323 194484.7889186071 211787.90630127222 179613.82165327374 166001.41468087138 201114.97202699527 223746.34735437666 249721.37560173022 329925.12748743006 220161.24926083363 1.2104647920815637 0.8833742975731091 0.9619672263503503 0.8158284995943053 0.7539992402759444 0.913489420605197 1.0162839650736883 1.1342658003628765 1.498561298117249 1.0 17.74820103589622 1.7097723875648818 2.5021161411193567 1.259711509914401 0.9154573327994816 0.3908428810234983 0.16082080162386234 0.22948351416410018 3.096067498918673 0.10049999811332082 0.04331894079086693 51.25926653020368 -1.7097723875648818 -0.34425417711491935 MS(ph)PMGTASGSNSPTSDSASVQR ddPTM_BT-474_Trastuzumab_2h_R1 3 MSPMGTASGSNSPTSDSASVQR 22 0 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 1 MS(1)PMGTASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(0.999)PMGT(0.001)ASGSNSPTSDSASVQR 438.1 7.636299999999995e-176 2019190000.0 404724.0 508905.0 499815.0 490757.0 474948.0 463423.0 510499.0 484181.0 540739.0 477355.0 True False 402545.0109530637 525843.5952854314 570184.60753014 552886.7858815505 535429.8125626517 431387.65879040107 485804.2130744386 520313.044841301 407481.11898137396 446889.79521582334 0.900770201652639 1.1766739829704047 1.2758953407176639 1.237188210159367 1.1981249477940492 0.9653110529902891 1.0870783317838388 1.1642983357675873 0.911815672104535 1.0 18.769559575424786 2.7573811956259524 24.670518282945146 1.051492967460457 1.169761982540077 0.2296515475679397 0.11515180034750244 1188.9390793433688 1558491.0570603004 0.036330655904775314 0.038466886588214975 571.9804638856201 -2.7573811956259524 0.11826901507961995 MS(ph)PNQLCSVPLQPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 MSPNQLCSVPLQPGR 15 0 Q86TB9-4 Q86TB9-4 PATL1 Protein PAT1 homolog 1 1 MS(1)PNQLCSVPLQPGR;MS(1)PNQLCSVPLQPGR;MS(0.999)PNQLCS(0.001)VPLQPGR 283.85 6.5985e-34 890193000.0 309527.0 309438.0 261864.0 305223.0 288735.0 360264.0 335898.0 294693.0 390635.0 331559.0 True False 307860.5410236828 319737.4567707793 298732.1750373091 343864.2005047806 325503.6907835753 335359.79765023594 319649.3304850308 316684.48808073264 294368.23849082284 310398.6207580591 0.9918231603987874 1.0300865899143261 0.9624146341492819 1.107814846808892 1.0486634572944507 1.0804165199936018 1.0298026766497206 1.0202509512037203 0.9483554977529003 1.0 18.243762621427287 1.4220524709588431 4.1913613491265105 0.9746777452417266 1.0370446286255983 0.2646701713983718 0.04020771040010079 0.28030053838620345 8.540319890656518 0.028916150379816916 0.010359342376210367 26.427280293896725 -1.4220524709588431 0.06236688338387175 MS(ph)PPPSGFGER ddPTM_BT-474_Trastuzumab_2h_R1 1 MSPPPSGFGER 11 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 MS(0.999)PPPS(0.001)GFGER 76.165 0.019624000000000003 0.0 180410.0 166430.0 117700.0 134770.0 140490.0 164680.0 153380.0 144950.0 199210.0 153660.0 True False 179438.6926054352 171969.52194094055 134271.13693326036 151831.86818172073 158380.56875053048 153296.0592150224 145960.42343149998 155766.90504118596 150117.36477723927 143853.28724505546 1.2473729036150538 1.195450762609191 0.9333894240771029 1.0554633202303794 1.100986788579448 1.065641683626465 1.0146478139415402 1.0828178349225732 1.0435449036455657 1.0 17.13423866345251 4.392501326835259 7.016551919047332 1.0449663272699077 1.2346057366293544 0.7261222438778303 0.04554065736717072 0.096873318983107 6.533428190086071 0.010958344302587677 0.030541497947093203 24688.87647719468 -4.392501326835259 0.18963940935944668 MS(ph)PSKSPFLPSMK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSPSKSPFLPSMK 13 1 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 MS(0.986)PS(0.013)KS(0.001)PFLPSMK;MS(0.907)PS(0.093)KSPFLPSMK 188.04 3.9053e-06 1368960000.0 1747670.0 1464840.0 1238650.0 1229590.0 1129680.0 1923280.0 1926680.0 1606270.0 2713800.0 1786880.0 True False 1738260.7389043926 1513596.313885522 1413041.1534611976 1385255.9679272983 1273538.0518620496 1790328.1805141356 1833479.1277676541 1726138.0238737897 2045020.3530569335 1672839.7885750656 1.0391077201631203 0.904806499835117 0.8446960450796273 0.8280864535791961 0.761303061153786 1.0702329014060261 1.0960279282509309 1.0318609323276104 1.2224842851202706 1.0 20.673867851343537 2.6618360557184517 8.168139789408377 1.0832936942514106 0.8730529415497883 0.5977933572330693 0.08552348986334603 0.23511987763381548 22.997169080335315 0.0280579954831975 0.026443108137129332 459.02470029492895 -2.6618360557184517 -0.21024075270162235 MS(ph)SPEDDSDTKR ddPTM_BT-474_Trastuzumab_2h_R1 2 MSSPEDDSDTKR 12 1 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 MS(0.568)S(0.432)PEDDSDTKR;MS(0.593)S(0.407)PEDDSDTKR 124.42 0.00019807 936530000.0 829500.0 840270.0 796150.0 850780.0 791000.0 1000370.0 979180.0 956490.0 1192530.0 899670.0 True False 825034.0641661132 868237.8789960584 908240.9997401453 958488.6607675615 891729.1613756828 931216.776517683 931813.3225691495 1027868.1407578054 898646.9605833087 842252.2903537615 0.9795569256565436 1.0308524998268422 1.0783479132584695 1.1380065946332762 1.0587435280242932 1.1056268854152416 1.106335160190269 1.2203803450936084 1.066956980557287 1.0 19.68389292093911 4.566483826385295 1.065560246201763 1.116533752016619 0.9309659780713101 0.29273495071154676 0.05573907012763518 1.4347571307230698 1.6373661603307292 0.017335976184552373 0.2824146010627946 36853.931677847344 -4.566483826385295 -0.18556777394530888 MS(ph)VDAVEIETLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MSVDAVEIETLR 12 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 MS(1)VDAVEIETLR;MS(1)VDAVEIETLR 175.21 2.9671e-05 188171000.0 201562.0 164315.0 141419.0 158126.0 139179.0 152240.0 126161.0 139529.0 189694.0 165731.0 True False 200476.81258764354 169784.12544448482 161329.5659640166 178144.73538697595 156902.6206714364 141716.00713441215 120058.11044817753 149941.36249390585 142946.45546937222 155153.90569055238 1.292115797506804 1.0942948853837542 1.0398034470739093 1.1481807988918937 1.0112708408666924 0.9133898789313012 0.7738001174629026 0.9664040478166066 0.921320380773866 1.0 17.243340488734763 3.012666831019459 2.5522725977859286 0.9057499657012777 1.1343384069110893 0.6333747128446909 0.08152869781064075 0.18573506871275455 2.4440763912885655 0.026232122378370144 0.03075064818583439 1029.595962926856 -3.012666831019459 0.2285884412098116 MS(ph)VDAVEIETLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSVDAVEIETLRK 13 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 MS(1)VDAVEIETLRK 119.0 0.00023479 131180000.0 61370.0 53353.0 45268.0 50375.0 40667.0 59296.0 43984.0 50412.0 67473.0 70069.0 True False 61039.590738848005 55128.822352430405 51641.34092349045 56752.46983493489 45845.70139780644 55197.00708777002 41856.32588480315 54173.9994269491 50845.18324187868 65597.13643091098 0.9305221852654632 0.8404150752905786 0.787249927866604 0.8651668795742086 0.698897907625779 0.8414545221178258 0.6380816017614973 0.8258592123759382 0.7751128480346161 1.0 16.001345216540745 5.217069669128617 1.0460864456222727 0.7874540065046313 1.1749522171896236 0.12845629308921547 0.09261289275596882 7.051978632904718 3.14759477638667 0.024931728529727897 3.8651485497759466 164842.6809456334 -5.217069669128617 0.38749821068499235 MSCFSRPS(ph)MS(ph)PTPLDR ddPTM_BT-474_Trastuzumab_2h_R1 8 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 MS(0.005)CFS(0.007)RPS(0.986)MS(0.971)PT(0.031)PLDR;MS(0.008)CFS(0.014)RPS(0.948)MS(0.612)PT(0.418)PLDR;MS(0.038)CFS(0.056)RPS(0.929)MS(0.95)PT(0.027)PLDR;MSCFSRPS(1)MS(0.577)PT(0.423)PLDR;MS(0.009)CFS(0.012)RPS(0.977)MS(0.966)PT(0.035)PLDR;MS(0.002)CFS(0.018)RPS(0.98)MS(0.978)PT(0.022)PLDR;MSCFS(0.005)RPS(0.995)MS(0.697)PT(0.303)PLDR;MSCFSRPS(1)MS(0.5)PT(0.5)PLDR 200.33 4.2827e-10 4625510000.0 1696870.0 2064390.0 1819620.0 1973990.0 1907570.0 1983130.0 1897720.0 1801900.0 2632850.0 1986410.0 True False 1687734.2404599804 2133101.97319989 2075806.6795794324 2223896.9316022457 2150487.7324467907 1846040.8908858832 1805920.0336055981 1936366.9278628035 1984019.3958825099 1859635.6131488392 0.9075617978740547 1.1470537336010693 1.1162437764162627 1.1958777923362194 1.156402747528299 0.9926895773737433 0.9711149973879631 1.0412614784162142 1.0668861049198004 1.0 20.82658852904248 2.7308224600861037 24.682284101374766 1.0153157011652498 1.1126997140495372 0.2562215314073537 0.07624682299704126 672.9516325138187 2146499.2352081323 0.024720209562874886 0.023686132506228537 538.0497823917415 -2.7308224600861037 0.09738401288428733 MSCFSRPS(ph)MSPT(ph)PLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 MSCFSRPS(1)MS(0.096)PT(0.904)PLDR 196.71 1.1333e-09 610910000.0 139790.0 189780.0 152510.0 178790.0 152340.0 159260.0 159950.0 153200.0 240160.0 163810.0 True False 139037.3861721289 196096.71257556762 173982.08235931647 201424.79566824812 171739.59601007774 148250.73105771473 152212.60743166294 164632.56193383705 180975.78597912643 153355.50555520313 0.9066344613371565 1.2787067009144906 1.1345017039292953 1.3134500449724094 1.1198789074335316 0.9667128057841338 0.9925473942431836 1.0735353865373587 1.180106220014259 1.0 17.226520435594146 2.9935555825203197 24.960058647420155 1.0448978267667064 1.171651001853427 0.1820430558955629 0.11539169293691662 449.03908512778537 1739195.7643199796 0.03279626699183656 0.03794550634437238 985.2707331149696 -2.9935555825203197 0.12675317508672057 MSCFSRPS(ph)MSPTPLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MSCFS(0.001)RPS(0.799)MS(0.164)PT(0.036)PLDR 80.128 0.04322 566370000.0 224770.0 311090.0 252800.0 280840.0 259060.0 298390.0 286070.0 228400.0 370750.0 281340.0 True False 223559.8632942949 321444.442592124 288392.0426230093 316394.3152048264 292049.75543108024 277763.0016345063 272231.70120647555 245444.36779170006 279383.6302954743 263384.64033270784 0.8487961295385098 1.2204373124646712 1.0949463197956877 1.2012633493173963 1.1088336626697843 1.0545907357529871 1.033589889154478 0.9318856539305193 1.06074382296005 1.0 18.006811689575862 2.331716669842144 2.2512747629987153 0.9905815186595324 1.1064711415088557 0.1431701344560341 0.0990262280245143 0.4634834013928303 4.818948632758639 0.0405912250032368 0.030036249261502675 214.64297041211006 -2.331716669842144 0.11588962284932336 MSCFSRPSMS(ph)PTPLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MSCFSRPS(0.275)MS(0.712)PT(0.013)PLDR;MSCFSRPS(0.001)MS(0.899)PT(0.1)PLDR;MSCFSRPSMS(0.99)PT(0.01)PLDR;MSCFSRPS(0.011)MS(0.615)PT(0.374)PLDR;MSCFSRPS(0.043)MS(0.841)PT(0.116)PLDR;MSCFSRPS(0.249)MS(0.66)PT(0.09)PLDR 200.27 2.1791e-11 9736600000.0 2477130.0 3527630.0 3118470.0 3169490.0 3231240.0 3071080.0 3135500.0 2851690.0 4213100.0 3091120.0 True False 2463793.407315016 3645045.0320526347 3557523.4697728455 3570747.109024871 3642719.260940027 2858783.468144709 2983823.886226814 3064497.5883884085 3174837.9576476417 2893842.075159025 0.8513917979368737 1.259586714611 1.2293426446145475 1.2339122233643827 1.2587830179847839 0.9878851001181916 1.031094236910922 1.058971951059218 1.0971013190044847 1.0 21.464554761545696 2.731531016737564 24.96567454295859 1.0399571687946032 1.1789939326747094 0.24071192927832774 0.11565004050862619 769.2046818207158 2731830.5467645833 0.036515010310403655 0.035138003731291015 538.9283335477587 -2.731531016737564 0.13903676388010622 MSCFSRPSMSPT(ph)PLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MSCFSRPSMS(0.026)PT(0.973)PLDR;MSCFSRPS(0.002)MS(0.163)PT(0.835)PLDR 135.04 6.904800000000001e-05 2036500000.0 578270.0 1018800.0 881770.0 920010.0 864580.0 854300.0 878610.0 836720.0 1200090.0 897780.0 True False 575156.658571837 1052710.1421223949 1005915.5515177649 1036483.1716692492 974679.1382328542 795244.251805887 836108.2776838603 899160.2951780702 904343.8998821196 840482.9117718725 0.6843168974837509 1.2525063001020609 1.196830461903305 1.2331995774716904 1.1596656214914287 0.9461753959154087 0.9947950945501202 1.069813892209297 1.0759813045759823 1.0 19.680858962128365 2.7547401419400526 24.50212895600709 1.0237235741848785 1.1256718292752186 0.06613020581697215 0.15521954976154057 1607.4284692142298 2434272.073949507 0.046782512948835946 0.04947155494146842 568.5126621782799 -2.7547401419400526 0.10194825509034011 MSDDVHSLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSDDVHSLGK 10 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 0 134.68 0.00016435 199250000.0 348570.0 397780.0 358270.0 374860.0 365280.0 429850.0 432630.0 367250.0 527530.0 430340.0 False True 346693.33784976794 411019.86683691223 408711.3018613351 422317.237564738 411796.2428158146 400135.48125806026 411702.03409290616 394656.05985771364 397527.3000398428 402875.3327673897 0.8605474439656005 1.0202160157425795 1.0144857940392071 1.0482578684175077 1.0221431031459443 0.9931992572230492 1.0219092622645447 0.9795984706901336 0.9867253408372988 1.0 18.619973949360887 4.741092301586663 24.977450513375242 1.00939857319224 0.8605473907158976 0.8429920662771322 0.019299625647708155 91.24607027005426 900175.501818175 0.005031375581122927 0.033986354940891535 55092.47732494369 -4.741092301586663 -0.14885118247634233 MSDLTPVHFTPLDSSVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 MSDLTPVHFTPLDSSVDR 18 0 Q9Y314;A0A075B6F9;M0R3B2 Q9Y314 NOSIP Nitric oxide synthase-interacting protein 0 ;;; 195.89 2.0140999999999997e-15 951690000.0 509213.0 777060.0 732360.0 783610.0 854140.0 737750.0 738450.0 741810.0 818380.0 791680.0 False True 506471.45378688263 802923.9723573102 835469.9222127659 882814.945654657 962909.6661155818 686751.0789766986 702728.3523470555 797167.629034854 616701.2147301687 741154.3046086519 0.6833549378820815 1.0833425203963083 1.127255035851023 1.191135152511602 1.2992026898150746 0.9265966273235374 0.9481539107003011 1.0755757931619632 0.8320820791235941 1.0 19.499414410110255 MSES(ph)PTPCSGSSFEETEALVNTAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSESPTPCSGSSFEETEALVNTAAK 25 0 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;O95359-2;Q4VXL4;H0Y911 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 1 MS(0.093)ES(0.514)PT(0.385)PCS(0.007)GS(0.001)SFEETEALVNTAAK;MS(0.121)ES(0.675)PT(0.203)PCSGSSFEETEALVNTAAK 278.97 2.2873e-53 351890000.0 258910.0 211501.0 222080.0 190097.0 222510.0 259990.0 262360.0 234720.0 311650.0 252760.0 True False 257516.05732760509 218540.6829299456 253346.9336460362 214163.2607089154 250845.32957990316 242017.5032506293 249668.64448747126 252235.99828400966 234848.03339604725 236628.64040127702 1.08827087410428 0.9235597286927832 1.0706520276514633 0.9050606061283848 1.060080170999239 1.0227735021433322 1.0551074631713258 1.0659571802308696 0.9924750993700078 1.0 17.852265175604966 MSFGEIEEDAYQEDLGFSLGHLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSFGEIEEDAYQEDLGFSLGHLGK 24 0 Q8WWY3-4;Q8WWY3;E7EVX8 Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 0 143.98 2.3601e-07 88142000.0 17210.0 27056.0 25058.0 24469.0 25209.0 27712.0 25879.0 25814.0 32060.0 28764.0 False True 17117.343272210757 27956.54260430263 28585.948591959528 27566.7728911369 28419.2167245507 25796.334667031202 24627.133902619593 27740.37176083599 24159.24258199032 26928.256893900638 0.6356647346188942 1.0381861222749589 1.061559561934897 1.0237117463544732 1.0553678552802195 0.9579652618686276 0.9145461586931659 1.0301584640303734 0.8971706812356832 1.0 14.716833224616812 4.74228422682158 24.92199838998965 0.999465220421029 0.6356645893407517 0.8003450756331892 0.05422918824588413 150.16031067754656 1004974.6956073763 0.013147550113363134 0.09843202139563106 55243.88681744313 -4.74228422682158 -0.3638006310802774 MSKPGS(ph)PGSVIPAQAHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSKPGSPGSVIPAQAHGK 18 1 Q8IZD2-6;Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-2 Q8IZD2-6 KMT2E Histone-lysine N-methyltransferase 2E 1 MS(0.14)KPGS(0.762)PGS(0.098)VIPAQAHGK 138.22 1.506e-06 766220000.0 993230.0 697460.0 662550.0 631610.0 703350.0 912970.0 964230.0 819250.0 1131500.0 854650.0 True False 987882.5600382279 720674.5344765274 755831.2810121634 711571.7612395682 792917.4534179348 849858.5328002117 917586.511183696 880386.5950672064 852656.9863232087 800105.5052973225 1.234690367079935 0.9007243791038805 0.9446645173767344 0.8893474129704247 0.9910161199594338 1.0621830835727104 1.146831892929817 1.1003381294571284 1.0656806892065538 1.0 19.609830726853232 2.6853763765206815 3.7736552738136533 1.0910940059520433 0.977975086440083 0.14369154751915403 0.09655621466824793 0.34828602272944376 10.2269842299401 0.03150159832700904 0.030289078683220203 484.59215209858235 -2.6853763765206815 -0.11311891951196029 MSMEDENFR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSMEDENFR 9 0 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 0 97.635 0.011636 0.0 206710.0 222110.0 218900.0 231040.0 226520.0 248820.0 228850.0 230520.0 279330.0 271820.0 False True 205597.09632763997 229502.79708166944 249719.21728709133 260289.6403109349 255365.9793107706 231619.6590592777 217779.65120810264 247722.57295684185 210492.86433023552 254472.21488318968 0.8079353434402069 0.901877626156624 0.9813221353133579 1.0228607489835997 1.0035122279577406 0.9101962631385828 0.8558091550705054 0.9734759178739961 0.8271742532946397 1.0 17.957148615458557 7.999980555201154 0.005177821841940939 1.8051118288720196 4.527535133323324e-07 0.04066286267625174 0.07302475740047709 278536.4011395243 111.53895301872164 18000.95861290587 20990.640456375833 99995522.7698351 -7.999980555201154 -1.8051113761185063 MSMTGAGKS(ph)PPSVQSLAMR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSMTGAGKSPPSVQSLAMR 19 1 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 MSMTGAGKS(0.946)PPS(0.053)VQSLAMR 119.52 3.5146e-05 893910000.0 556680.0 602450.0 504860.0 606290.0 609010.0 635890.0 674330.0 600050.0 885440.0 704780.0 True False 553682.8967329628 622502.1840612848 575939.8996782134 683046.251835686 686563.8136149242 591932.4210240507 641710.0817092418 644828.777992161 667235.1762881323 659800.3370074842 0.8391673445396897 0.9434705457784931 0.8729002811522972 1.035231741368356 1.040562993236447 0.8971387067014128 0.9725822278595818 0.977308955186009 1.0112683168886647 1.0 19.331669989227958 3.750256513427021 24.99089834087615 0.9862356255633702 0.8910084995580805 0.5341952074297993 0.04487785660821907 644.1211631078788 1376305.2738123024 0.011657641050245223 0.020799035993944313 5626.735668248115 -3.750256513427021 -0.09522712600528971 MSQPGS(ph)PSPK ddPTM_BT-474_Trastuzumab_2h_R1 21 MSQPGSPSPK 10 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 MS(0.002)QPGS(0.997)PS(0.001)PK;MS(0.047)QPGS(0.942)PS(0.012)PK;MSQPGS(0.998)PS(0.002)PK;MSQPGS(0.999)PS(0.001)PK;MSQPGS(0.991)PS(0.009)PK;MS(0.001)QPGS(0.881)PS(0.118)PK;MSQPGS(0.999)PS(0.001)PK;MS(0.001)QPGS(0.948)PS(0.051)PK;MSQPGS(0.998)PS(0.001)PK;MS(0.001)QPGS(0.896)PS(0.103)PK;MS(0.086)QPGS(0.905)PS(0.008)PK;MS(0.005)QPGS(0.99)PS(0.005)PK;MSQPGS(0.794)PS(0.206)PK;MSQPGS(0.949)PS(0.051)PK;MSQPGS(0.991)PS(0.009)PK;MSQPGS(0.91)PS(0.09)PK;MSQPGS(0.987)PS(0.013)PK;MSQPGS(0.995)PS(0.005)PK;MSQPGS(0.888)PS(0.112)PK;MSQPGS(0.992)PS(0.008)PK;MSQPGS(0.867)PS(0.133)PK 205.26 1.804e-07 42152008000.0 20843570.0 18450440.0 17302760.0 15946660.0 15578700.0 21898920.0 22110310.0 20523520.0 28606000.0 21194600.0 True False 20731350.53505834 19064551.741873488 19738838.20971403 17965505.52095213 17562555.1028108 20385099.20491277 21040749.83571349 22055089.27872287 21556434.60076156 19841942.48239001 1.0448246462491104 0.9608208348952495 0.9948037208167756 0.9054307831451865 0.8851227705350827 1.0273741708003046 1.0604178423754347 1.1115388172451897 1.0864074734564515 1.0 24.242049933511513 2.4688526193203524 4.000535611050922 1.0759627914845162 0.9569099559512277 0.5017384382745629 0.049627317758015585 0.16516325153926434 6.073234625535006 0.01800981862707978 0.015570527821270169 294.34225945386936 -2.4688526193203524 -0.11905283553328849 MSSEGPPRMS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSSEGPPRMSPK 12 1 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 MSSEGPPRMS(1)PK;MS(0.001)S(0.03)EGPPRMS(0.97)PK 139.64 0.00015519999999999998 759190000.0 976790.0 868690.0 829440.0 730200.0 773200.0 1011450.0 1081880.0 970930.0 1711660.0 1138460.0 True False 971531.0711715712 897603.8215158058 946217.942378278 822643.245130908 871662.4368845498 941530.8421971977 1029545.3312170518 1043385.7268826399 1289844.328068918 1065802.5081153568 0.9115488693017955 0.8421858784166549 0.8877985697851861 0.7718533582601304 0.8178461114957385 0.8834008505591652 0.9659813364837938 0.978967227922595 1.2102095071531884 1.0 20.02350870258198 1.8258765240411088 1.4889432958696698 1.0920173318235142 0.8467932061937166 0.6857779644989286 0.06551822751869772 0.21272320674027928 0.8918912628459327 0.047366255134763044 0.019746352299784588 66.96941789814346 -1.8258765240411088 -0.24522412562979767 MSSPEDDSDTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSSPEDDSDTKR 12 1 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 0 75.08800000000002 0.036471 299710000.0 66570.0 76226.0 64667.0 60033.0 63157.0 79764.0 76549.0 59354.0 100460.0 77009.0 False True 66211.59451662227 78763.13633041004 73771.55150435964 67633.17164467774 71199.66958913281 74250.10242425946 72846.03242442246 63783.296873505074 75702.97909503267 72094.21968927816 0.9184036501399188 1.0925027924551305 1.0232658293870254 0.9381219733866699 0.9875919303378161 1.0299036836000586 1.010428197134036 0.8847213708450875 1.0500561545892035 1.0 16.137595972442565 MSSSEEESKIDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSSSEEESKIDLLDR 15 1 P54577;A0A0C4DGZ5 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase 0 87.363 0.0065665 279450000.0 417400.0 405830.0 440610.0 443290.0 381810.0 433730.0 444080.0 466310.0 659420.0 459040.0 False True 415152.76477749954 419337.80622058426 502644.0581492252 499410.468548452 430431.24033482914 403747.2659905983 422598.15384965873 501108.4200742018 496914.7767752984 429743.67419608386 0.966047413156507 0.9757858728346247 1.1696368982964442 1.1621124371003086 1.0015999447578408 0.9395071765649217 0.9833725991201798 1.1660635168431952 1.1563050409174043 1.0 18.71311687790255 1.7368155086465598 21.42747005650269 1.120819409651415 1.032416552844208 0.14598797369565586 0.08552958427107706 0.1955367374629532 2087.964277452461 0.04271672320359723 0.023676099706340582 54.55260685466634 -1.7368155086465598 -0.08840285680720705 MSSSEEESKIDLLDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 MSSSEEESKIDLLDRK 16 2 P54577;A0A0C4DGZ5 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase 0 58.09 0.063502 98850000.0 148390.0 176180.0 152750.0 149990.0 141080.0 199770.0 195630.0 186380.0 306760.0 219510.0 False True 147591.084727679 182044.04479694084 174255.87227319874 168978.7186211787 159045.7017533268 185960.37010799744 186166.6295208263 200288.62201846327 231163.10837340422 205500.68386803402 0.7182024018102893 0.8858561507943385 0.8479576271634225 0.8222781328051028 0.7739424451524496 0.9049136314671111 0.905917323566556 0.9746372530180105 1.1248775625576497 1.0 17.64878366937238 1.8680612380453674 1.264900032434147 1.0580347520328746 0.8200053934523721 0.739951859904686 0.05676681853280315 0.2198666886849042 0.652842954152206 0.042653053064420215 0.01806105327531213 73.80082862491447 -1.8680612380453674 -0.23802935858050245 MSSYAFFVQTCR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSSYAFFVQTCR 12 0 P26583;D6R9A6;P09429;Q5T7C4;B2RPK0 P26583;P09429 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 0 107.03 0.0043235 140040000.0 110880.0 133060.0 167560.0 111130.0 82538.0 136730.0 116630.0 96757.0 183330.0 118770.0 False True 110283.0343999261 137488.82166353147 191150.9915423712 125199.04660558442 93048.72505894575 127278.17692779953 110988.1613301335 103977.49866209053 138150.77799614123 111189.99691588721 0.9918431285086984 1.236521499029618 1.7191383833473142 1.1259919963870018 0.836844389242452 1.1446908935889502 0.9981847684922017 0.9351335690812836 1.2424748792883704 1.0 16.762667477885138 3.4879486418000107 24.654725993073374 1.017275974149724 1.327013417793888 0.30451094278753377 0.19524468554149427 483.83180745799245 1101718.2492974254 0.05257467876725988 0.07613766424574367 3075.733067419265 -3.4879486418000107 0.309737443644164 MSTS(ph)QNS(ph)IPFEHHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSTSQNSIPFEHHGK 15 0 P48730-2 P48730-2 CSNK1D Casein kinase I isoform delta 2 MS(0.272)T(0.313)S(0.416)QNS(1)IPFEHHGK;MS(0.243)T(0.263)S(0.655)QNS(0.838)IPFEHHGK 49.592 0.075152 150050000.0 392306.0 317163.0 276598.0 306114.0 258060.0 360518.0 296423.0 229331.0 497515.0 363947.0 True False 390193.8680852944 327719.5787259182 315540.5941670852 344868.0010134243 290922.4113585444 335596.2392280871 282083.8870441751 246444.84373922195 374909.094609448 340719.5908692966 1.1452052612817811 0.9618454221836474 0.9261005314136155 1.0121754376774863 0.8538470318548403 0.9849631433633212 0.8279062742605409 0.7233069372690126 1.1003449894176083 1.0 18.37822537707332 7.999999985915695 0.6632032830386992 0.8921383649972835 24.503039920769613 0.24134430210021973 0.10467442139313486 290.8599413696608 1.7741870778538995 0.04111642573413497 10112.70632426485 99999996.75696892 -7.999999985915695 23.61090155577233 MSTSQNS(ph)IPFEHHGK ddPTM_BT-474_Trastuzumab_2h_R1 4 MSTSQNSIPFEHHGK 15 0 P48730-2 P48730-2 CSNK1D Casein kinase I isoform delta 1 MSTSQNS(1)IPFEHHGK;MST(0.002)S(0.016)QNS(0.982)IPFEHHGK;MSTSQNS(1)IPFEHHGK;MSTSQNS(1)IPFEHHGK 190.55 3.543800000000001e-07 2944750000.0 2452260.0 2186920.0 2149240.0 2218020.0 1991750.0 2512860.0 2468680.0 1663300.0 2916670.0 2320320.0 True False 2439057.3046316965 2259710.3101789444 2451834.3104710327 2498821.104581283 2245387.5564728407 2339151.9028361733 2349260.517126584 1787423.892066261 2197895.7598756584 2172235.191074105 1.1228329762145397 1.0402696353803134 1.1287149386704642 1.150345558735604 1.0336760796894024 1.076840994220121 1.0814945484632101 0.8228500760004877 1.0118129790489514 1.0 21.050748883620624 1.7687210230195662 24.999999999999996 0.9279039971994604 1.0897066673011597 0.5526343196240915 0.05948727478390583 15.219917680809044 12622.652446671986 0.026147745743883292 0.014503024389858874 58.71120892144257 -1.7687210230195662 0.16180267010169935 MSVDAVEIETLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MSVDAVEIETLR 12 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 0 134.2 0.00034841 24457000.0 36616.0 44508.0 39231.0 42233.0 43446.0 42385.0 39541.0 45394.0 43865.0 43291.0 False True 36418.86352442005 45989.42187434586 44754.38379803512 47579.69346975296 48978.59057538297 39455.024713557934 37628.25076871137 48781.5307860614 33055.05851088601 40528.13131671022 0.8986070253232753 1.134753080889863 1.1042794805489187 1.1739917909843354 1.2085084849492809 0.9735219323396282 0.9284477114096994 1.2036461884919971 0.8156077627308966 1.0 15.306636036250097 2.7122469830651177 24.43046815522801 1.009192098285595 1.1096358022378177 0.1864243611489519 0.11927867688215826 1147.9426167696172 1065787.1680175334 0.03882673823794274 0.03661727197659726 515.5217381998629 -2.7122469830651177 0.10044370395222257 MSVIEEGDCKR ddPTM_BT-474_Trastuzumab_2h_R1 4 MSVIEEGDCKR 11 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;;; 160.67 4.3617e-05 3178880000.0 1837110.0 1851610.0 1669590.0 1600870.0 1616950.0 1935900.0 1900220.0 1687500.0 2461780.0 1840550.0 False True 1827219.2038821098 1913239.7195281195 1904653.7596635697 1803539.9778591027 1822858.998086487 1802075.7896184237 1808299.0990546702 1813429.8189513742 1855107.3051619497 1723084.523225868 1.0604350391710828 1.1103574396607387 1.1053745385036466 1.0466926918260575 1.0579045737546446 1.0458429434701628 1.0494546696230944 1.0524323064293832 1.0766200265608072 1.0 20.716562041779625 3.731861647430726 24.852931204388927 1.0498404571729143 1.0938858496393868 0.4654263010816876 0.021957372020640728 392.7317953214799 1457021.238195215 0.0054042351592025846 0.008596036197381262 5393.387787645341 -3.731861647430726 0.044045392466472544 MSVQPTVSLGGFEITPPVVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MSVQPTVSLGGFEITPPVVLR 21 0 P06748;P06748-3;P06748-2;E5RI98 P06748 NPM1 Nucleophosmin 0 ; 180.74 1.2289e-16 307940000.0 81782.0 92225.0 79040.0 94979.0 88613.0 93101.0 94735.0 74768.0 114662.0 92049.0 False True 81341.69479883446 95294.6533738103 90168.14497200427 107003.33166158377 99897.3402995997 86665.1470061805 90152.30612715578 80347.56782421106 86405.08649208264 86174.35401288625 0.9439199832779817 1.1058354247664013 1.0463454702372448 1.2417073836791723 1.1592467555331063 1.005695348679038 1.0461616702537124 0.9323837555219285 1.0026775075002232 1.0 16.394970958336092 2.6123013942597386 5.699121372335877 0.9903019825735794 1.1044339019531977 0.308738898660347 0.07601728634966005 0.28064065942440314 11.8957690256391 0.025887072517711936 0.024309629573996284 409.54477944553685 -2.6123013942597386 0.11413191937961831 MSWFVDLAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSWFVDLAGK 10 0 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 0 ; 87.323 0.030138 561391000.0 847690.0 817970.0 702910.0 666401.0 721850.0 924110.0 959170.0 796760.0 1116890.0 865820.0 False True 843126.1312272138 845195.6369766931 801873.618196755 750767.298272366 813773.3187598437 860228.4508209523 912771.2827147745 856218.2770653 841647.4250592384 810562.6263342041 1.0401739530482415 1.0427271249836894 0.9892802753850798 0.926229848109005 1.0039610664510403 1.0612732722594964 1.126095940103743 1.0563258769252353 1.0383496570346653 1.0 19.62856413113746 2.74363795062708 5.684350972708793 1.0655728665241986 0.9977876958181452 0.2934398087060096 0.04221374779467313 0.1886587122997735 24.230114727631996 0.014046003006458661 0.014148197407359318 554.1635421866894 -2.74363795062708 -0.06778517070605339 MSYLELMEHPFFTLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 MSYLELMEHPFFTLHK 16 0 P46734-2;P46734;P46734-3 P46734-2 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 0 ; 275.18 1.7113e-35 341580000.0 290020.0 319140.0 332200.0 302620.0 316460.0 354820.0 351130.0 237630.0 467560.0 335310.0 False True 288458.56454425113 329762.3819757961 378970.8724658373 340931.66097167216 356759.3051946255 330292.12855643826 334144.5004531401 255363.15726069 352336.10298301256 313910.2287266664 0.9189205643739089 1.0504990019389675 1.207258756756925 1.0860801266483557 1.1365010520420773 1.052186575430252 1.064458784310888 0.8134910362638881 1.1224103923348259 1.0 18.2599925141654 1.9666105864912593 24.55542256046895 0.9531766313963566 1.081305132386138 0.14790405203557622 0.09871368737266857 688.9367154683526 506660.3959921267 0.040186342607476805 0.025961462615023568 92.59991467163186 -1.9666105864912593 0.12812850098978146 MT(ph)MLLLY(ph)HS(ph)TMSSKSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTMLLLYHSTMSSKSPR 17 1 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;Q14980-5;F5H4J1;F5H6Y5;F5H763;F5H0Z7;F5H3L6;F5H2F3;F5GZW1 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 3 MT(0.915)MLLLY(0.42)HS(0.441)T(0.434)MS(0.403)S(0.38)KS(0.006)PR 40.381 0.091113 807590000.0 39825.0 138370.0 115190.0 167440.0 130400.0 111400.0 97787.0 80221.0 43739.0 107660.0 True False 39610.58662497345 142975.56180356856 131407.75075057146 188637.88683198986 147005.66705864613 103699.1802073931 93056.66922738367 86207.49837398397 32960.10952257251 100789.0466276367 0.39300487454072314 1.4185624984805063 1.303789996506813 1.871610984960589 1.4585480464137726 1.028873510337962 0.9232815701807344 0.8553260622900424 0.3270207490338016 1.0 16.620979335153315 2.235073554826319 1.7823026948430005 0.7245645610690586 1.320824798395986 0.28356551509635186 0.383497284459442 0.44872640488125093 2.847628503456694 0.2013007809027344 0.12639271077557251 171.81993674935515 -2.235073554826319 0.5962602373269273 MT(ph)S(ph)VGT(ph)NRAR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTSVGTNRAR 10 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 3 MT(1)S(1)VGT(1)NRAR 53.567 0.06127100000000001 185640000.0 40011.0 40073.0 30274.0 30751.0 42377.0 30431.0 38172.0 36719.0 36789.0 29880.0 True False 39795.58522163998 41406.805580359935 34536.316053674775 34644.07344702893 47773.459761842394 28327.376596868762 36325.47452879922 39459.15823530396 27722.843897343777 27973.03281844497 1.4226410657695796 1.4802401244478913 1.234628947022937 1.2384811354521839 1.7078398353124349 1.0126673350266884 1.2985890648527314 1.4106142330510985 0.9910560673658444 1.0 14.771749057923122 1.2328449036352556 24.99666270743199 0.995527758518867 1.3485864934025933 0.40522242981014434 0.17210988772125416 141.9612121247458 620810.4978632522 0.143984433644669 0.039891298261303165 17.094047390452385 -1.2328449036352556 0.3530587348837263 MTDFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MTDFDR 6 0 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 ; 116.11 0.05549 2034060000.0 3443520.0 3654630.0 3678510.0 3720390.0 2913230.0 3550560.0 3716260.0 2898980.0 3856220.0 3606170.0 False True 3424980.4709310415 3776272.1502795145 4196412.233817905 4191390.9925398165 3284212.5724329688 3305118.144319223 3536490.306308168 3115316.608322166 2905906.2517006444 3376021.143202535 1.0145020797121145 1.118557020261223 1.2430053177442892 1.2415179925573012 0.9728056884494286 0.9789980584019529 1.0475320373596386 0.9227775763770657 0.8607488307801492 1.0 21.686892508647095 3.2191237279405316 23.076548555022928 0.9639010349781716 1.158164900511343 0.6032782711124041 0.07568978739205519 69.0651491007473 81997.45684273168 0.023308881976470665 0.027912580521897656 1656.241749783425 -3.2191237279405316 0.19426386553317143 MTDLSDNPIHESMWELEVEDLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTDLSDNPIHESMWELEVEDLHR 23 0 Q96E14;Q96E14-2 Q96E14 RMI2 RecQ-mediated genome instability protein 2 0 258.48 6.937999999999998e-44 50702000.0 17959.0 34929.0 34822.0 42533.0 38235.0 43692.0 43698.0 29804.0 36699.0 42537.0 False True 17862.310739432483 36091.59064997363 39724.63492175013 47917.67343899324 43104.00061339981 40671.674879905026 41584.16079742923 32028.125821645455 27655.023191405562 39822.25224224209 0.4485509918116774 0.9063171623349043 0.9975486740454019 1.2032888834992563 1.0824099137134326 1.0213303514953356 1.0442443221058744 0.804277106850102 0.6944615543886806 1.0 15.281287197966627 4.737920077884991 3.2750358026237443 0.980155799358098 0.37508574336874206 0.5841914057470827 0.13394176322529058 0.2560813929737182 4.44200540600869 0.036302987609974115 0.3925297965528895 54691.530619201425 -4.737920077884991 -0.605070055989356 MTDQEAIQDLWQWR ddPTM_BT-474_Trastuzumab_2h_R1 21 MTDQEAIQDLWQWR 14 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 ;;;;;;;;;;;;;;;;;;;; 318.32 1.2335e-55 40453919000.0 6225798.0 7757657.0 7140279.0 7451118.0 7036885.0 7345464.0 7870578.0 6998574.0 8168725.0 7745164.0 False True 6192278.99531919 8015865.9236423215 8145568.218782342 8394428.774819655 7932990.593864882 6837689.363042357 7489848.073612274 7520843.129918684 6155652.179057043 7250861.002551496 0.8540060267518848 1.1055053904386842 1.1233932378397558 1.1577147557877265 1.0940756678514942 0.943017575517756 1.0329598196650964 1.0372344921895738 0.8489546519911136 1.0 22.789720887259747 2.748523327592283 24.324876427344158 0.9849458652667499 1.0772610382857297 0.19813150560100434 0.092218175560967 835.3179370079314 2039504.1562855158 0.028622083379749773 0.029995181075818365 560.4325194970771 -2.748523327592283 0.09231517301897985 MTEEEVEMLVAGHEDS(ph)NGCINYEELVR ddPTM_BT-474_Trastuzumab_2h_R1 4 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 P60660-2;G8JLA2;F8VZU9;F8W180;F8VXL3 P60660-2 MYL6 Myosin light polypeptide 6 1 MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR 317.25 2.0043999999999996e-82 313109000.0 276470.0 244203.0 223191.0 226414.0 219944.0 246797.0 248428.0 213020.0 328828.0 310212.0 True False 274981.5162387046 252331.14923116917 254614.35278905104 255077.98918524958 247952.56468977622 229736.50428764778 236410.58855288 228916.63409364206 247792.74546945436 290414.0045741449 0.9468603852005345 0.8688670148713408 0.876728906935499 0.8783253740097311 0.8537899715041878 0.7910655156748624 0.8140467912335908 0.7882424073498766 0.8532396563754245 1.0 18.147751500230896 3.2559900156869546 2.124108126785832 0.829284284496245 0.8939648225761175 0.06222903591707074 0.0608078747865948 0.5177150052643308 4.796836971337042 0.01785403559156846 0.024770433483033413 1802.976290444301 -3.2559900156869546 0.06468053807987251 MTEEEVEMLVAGHEDSNGCINYEELVR ddPTM_BT-474_Trastuzumab_2h_R1 11 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 P60660-2;G8JLA2;F8VZU9;F8W180;F8VXL3 P60660-2 MYL6 Myosin light polypeptide 6 0 ;;;;;;;;;; 447.87 5.607799999999996e-211 2474075000.0 2162470.4 2439578.0 2314468.8 2422518.6 2416386.0 2711558.0 2539477.4 2293004.0 2979409.0 2705011.9 False True 2150827.8996394468 2520777.878973957 2640325.889316554 2729209.20637357 2724098.43405808 2524114.377780956 2416633.1764162555 2464119.602118386 2245173.5739851906 2532375.7246647994 0.8493320634417878 0.9954201718260518 1.0426280206370417 1.0777268079896891 1.0757086349888534 0.9967377088623227 0.954294875313629 0.9730466052562369 0.88658785981783 1.0 21.27206004040032 -0.6626733103434094 7.619499161610351 0.9999630727087001 0.9890758858417303 0.0 0.07059022108659871 0.0 0.0 0.07066588413997903 0.016656108624640693 0.21743361663315794 0.6626733103434094 -0.010887186866969767 MTEEQTY(ph)QAAEKSQADS(ph)EVPDENLMVENK ddPTM_BT-474_Trastuzumab_2h_R1 1 MTEEQTYQAAEKSQADSEVPDENLMVENK 29 1 Q96M83 Q96M83 CCDC7 Coiled-coil domain-containing protein 7 2 MT(0.272)EEQT(0.31)Y(0.47)QAAEKS(0.356)QADS(0.593)EVPDENLMVENK 42.57100000000001 0.064981 842860000.0 327140.0 191040.0 195850.0 187530.0 162850.0 283790.0 279980.0 272020.0 336810.0 307440.0 True False 325378.71458867105 197398.65091388108 223423.977641283 211271.278772116 183587.98221242722 264172.265269803 266436.2977725351 292319.5136895716 253807.68852277496 287818.91598737345 1.1304980198137684 0.6858432158174792 0.7762657880730972 0.7340423684362164 0.6378593345146265 0.9178419158572336 0.9257080857889953 1.0156369072781706 0.8818311598877311 1.0 18.134801886196687 2.522708140346837 11.727693786709635 0.9572163214279594 0.782221347266511 0.2686578640207855 0.1287251753767354 1.5146031164633824 388.1439467184659 0.04059581411610341 0.038169942731362524 333.2024149239553 -2.522708140346837 -0.17499497416144838 MTGSAPPPS(ph)PTPNK ddPTM_BT-474_Trastuzumab_2h_R1 6 MTGSAPPPSPTPNK 14 0 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 MTGSAPPPS(0.731)PT(0.269)PNK;MTGSAPPPS(0.975)PT(0.025)PNK;MTGSAPPPS(0.974)PT(0.026)PNK;MTGSAPPPS(0.99)PT(0.01)PNK;MTGSAPPPS(0.945)PT(0.054)PNK;MTGSAPPPS(0.991)PT(0.009)PNK 224.42 3.3107e-12 1315598000.0 3199070.0 2762270.0 2465095.0 2409745.0 2385338.0 3087300.0 2758771.0 2602079.0 3786830.0 2881974.0 True False 3181846.5625700937 2854210.4871225217 2812158.9490101524 2714818.4699232783 2689096.655293994 2873882.2177224844 2625318.70720135 2796259.348069436 2853616.487422283 2698043.9519379227 1.1793160598012757 1.0578813903577922 1.0422954551908854 1.0062172886299006 0.9966837839548529 1.0651724986386015 0.9730451964341291 1.0364024448382199 1.0576612309716515 1.0 21.363482419732815 4.950253770047803 1.516685906818542 1.0205427591105805 1.3136934158802676 0.7525931689474411 0.027139758252290452 0.8817271244808571 1.2651255884689638 0.0069084719876901296 0.4486065009657213 89177.18724189464 -4.950253770047803 0.2931506567696871 MTGSEFDFEEMKR ddPTM_BT-474_Trastuzumab_2h_R1 8 MTGSEFDFEEMKR 13 1 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;;;;;;; 275.35 5.4145e-32 10182800000.0 7816386.0 7833787.0 7018796.0 6974345.0 6617366.0 8711911.0 8418922.0 7747961.0 11210540.0 8828048.0 False True 7774303.446258118 8094529.864670754 8006981.468331522 7857296.361904289 7460048.335898812 8109677.098202609 8011666.579454761 8326153.1931687705 8447852.630539797 8264634.418567857 0.9406711842924196 0.979417776361053 0.9688246403667324 0.9507131185683887 0.9026471054955062 0.9812505535614364 0.9693915270414427 1.00744361716263 1.0221689433183287 1.0 22.978519573453482 1.9166399152411089 1.765556756498743 1.013034213174217 0.9525650445703487 0.581340736112912 0.021419298678074385 0.26048299650264406 1.5127753431624968 0.014423025308947875 0.0067205441430673515 82.53533440542962 -1.9166399152411089 -0.060469168603868195 MTGSPT(ph)LVK ddPTM_BT-474_Trastuzumab_2h_R1 1 MTGSPTLVK 9 0 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 MTGS(0.363)PT(0.636)LVK 103.31 0.038485000000000005 360310000.0 306580.0 460230.0 250910.0 431220.0 248150.0 342580.0 322830.0 313110.0 414250.0 370120.0 True False 304929.4073442405 475548.4773350901 286235.947051184 485812.40778601763 279750.43159971654 318898.25094657735 307213.4795696386 336475.8581403643 312163.6381656109 346498.62472432543 0.8800306425078673 1.3724397253046439 0.8260810480241113 1.4020615757783466 0.8073637574241058 0.9203449254677216 0.886622507705645 0.97107415190483 0.9009087364025428 1.0 18.40249010065981 3.191330785194308 24.999952573331647 0.9153139552215771 1.1171723633521589 0.24662581173069975 0.1761489586203493 157.28872329610132 83256.33181819096 0.045847272031341334 0.054798115756574395 1553.56985309517 -3.191330785194308 0.20185840813058176 MTGTLETQFTCPFCNHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MTGTLETQFTCPFCNHEK 18 0 K7EN05;K7EPC8;A0A024R7E8;K7EQ44;K7EMV4;P60002 K7EN05 ELOF1 Transcription elongation factor 1 homolog 0 138.77 1.3061e-06 329580000.0 134590.0 179980.0 191710.0 204870.0 196610.0 176290.0 178910.0 200510.0 204310.0 201880.0 False True 133865.38239435485 185970.52549979245 218701.10162680843 230806.5209942056 221647.11810123027 164103.48724202276 170255.4397974293 215473.0743691493 153960.53811373786 188995.84556183647 0.7082980157389555 0.9839926636850111 1.1571741218790594 1.221225367722114 1.172761853268943 0.8682915053195214 0.9008422343427883 1.1400942371436937 0.8146239281400732 1.0 17.527994996432312 2.7329781439668626 24.922265213038063 0.9651697112000309 1.0607082332653972 0.08964641857682465 0.1567497582370077 1326.377606700118 5921437.129220844 0.05332730285698966 0.05160938486236054 540.7271099656615 -2.7329781439668626 0.09553852206536628 MTIAGTTDTPTDVTHHPIPSEEDINFILNEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTIAGTTDTPTDVTHHPIPSEEDINFILNEVR 32 0 P43304;P43304-2 P43304 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial 0 164.6 3.2587e-14 56136000.0 21690.0 21334.0 30223.0 22750.0 30765.0 42664.0 22381.0 15952.0 28191.0 23229.0 False True 21573.22344998555 22044.089293324665 34478.135696974736 25630.14766738995 34682.74039155863 39714.73810025332 21298.345526277262 17142.41924261469 21243.70579004643 21746.505332652545 0.9920317365932443 1.0136842198836102 1.5854563834312059 1.1785869626098537 1.5948650075505342 1.8262584030281563 0.9793916401959828 0.7882838635629063 0.9768790647087946 1.0 14.408495957782804 2.0263563595506606 24.94239246563561 0.8946070027336065 1.3646206106039314 0.40825594170598023 0.2531123655251505 205.71168365369402 194674.74231382227 0.10007833391595596 0.0739108105399392 106.25670870827906 -2.0263563595506606 0.47001360787032487 MTLS(ph)PPHS(ph)PQGAAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTLSPPHSPQGAAPR 15 0 Q05GC8 Q05GC8 BCAR2 2 MT(0.069)LS(0.931)PPHS(1)PQGAAPR 123.83 5.2999e-05 150350000.0 98068.0 137360.0 111510.0 111470.0 116350.0 114820.0 112560.0 99334.0 102860.0 96845.0 True False 97540.01278437917 141931.94456412655 127209.63873770478 125582.09057072338 131166.48283952044 106882.76365720721 107115.04277904329 106746.80748783141 77511.531253385 90664.26918682405 1.0758374126789338 1.5654672544887513 1.403084587552069 1.3851332139670942 1.4467274044776885 1.1788851839412404 1.181447153765951 1.1773856277147887 0.8549292014218265 1.0 16.468246475801443 1.8768502745875892 0.9338844390875366 0.9498628193263968 1.384852924384156 0.5742604301529042 0.13663641319457115 0.380265756060718 0.6123087544563469 0.11123661851770553 0.049748433964244825 75.30958850230654 -1.8768502745875892 0.43499010505775926 MTNGFSGADLTEICQR ddPTM_BT-474_Trastuzumab_2h_R1 4 MTNGFSGADLTEICQR 16 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;; 399.62 6.842999999999995e-122 896800000.0 516149.0 602605.0 542473.0 613200.0 566524.0 567707.0 581110.0 546010.0 613634.0 606070.0 False True 513370.1111335445 622662.3431425845 618848.4831401566 690831.0571271877 638667.4733491751 528462.7513285318 552999.4892442245 586756.0387826009 462412.1229743307 567390.0937173673 0.9047921647170463 1.0974149003256126 1.090693140385391 1.217559250287704 1.1256232359730147 0.9313922769891956 0.9746371947052161 1.0341316235155849 0.8149809594748951 1.0 19.113981436699437 2.738565650314423 24.99999999999856 0.9618172762803847 1.0952175226973775 0.3580466161012008 0.09028695693699577 0.543841965099831 2698143.2791940626 0.02892928491030599 0.028907681312276494 547.7288923806016 -2.738565650314423 0.13340024641699277 MTNHCVFSANEDHETIR ddPTM_BT-474_Trastuzumab_2h_R1 4 MTNHCVFSANEDHETIR 17 0 E7ETZ4;Q9Y6E2;Q75MG1;B5MCH7;E9PFE3;C9JF98;F8WDX8;E7EMS9;Q9Y6E2-2 E7ETZ4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 ;;; 255.24 2.6772e-27 1760150000.0 682870.0 692020.0 672401.0 737360.0 669180.0 765320.0 763430.0 700440.0 878780.0 837060.0 False True 679193.5037939891 715053.4673650758 767069.216185737 830709.7003967769 754396.106459392 712415.229769498 726499.9743141872 752710.3895622519 662216.4440487041 783638.1141568793 0.8667183123484713 0.9124791845205309 0.9788564419317853 1.0600680153115603 0.9626842962724588 0.909112531536307 0.9270860633110383 0.9605331542252731 0.8450538993514711 1.0 19.579828042751704 2.7622340303078037 22.84016562151442 0.9287399404675648 0.9607679215294903 0.0497848281839397 0.059032733405389295 861.8594624600356 831520.3453355749 0.018806508497404832 0.019932731680773655 578.4076526892732 -2.7622340303078037 0.0320279810619255 MTNNEDS(ph)LSPTSSTLSNLELDAAEKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 MTNNEDS(0.494)LS(0.494)PT(0.009)S(0.002)S(0.001)TLSNLELDAAEKDR;MTNNEDS(0.562)LS(0.419)PT(0.008)S(0.008)S(0.001)T(0.001)LSNLELDAAEKDR 107.38 0.0027388 375520000.0 400070.0 354860.0 359110.0 322130.0 327470.0 423560.0 411440.0 382390.0 516650.0 421500.0 True False 397916.0675719554 366671.3005825997 409669.5665599247 362911.6249712672 369171.3634332423 394280.29415299254 391537.0753465668 410925.88353707583 389328.5302553113 394599.5091356943 1.0084048721792014 0.9292239146108753 1.0381907657646074 0.9196960882342853 0.9355596114193143 0.9991910405986035 0.9922391343166258 1.0413745431086363 0.9866422061904531 1.0 18.59002963585069 2.547615983367057 6.082214091770401 1.0097028116573632 0.9654950103107371 0.20651477676346575 0.03657239286781905 0.32213988257196363 21.718990011893673 0.0117047060174512 0.010926963421390707 352.8710123235532 -2.547615983367057 -0.04420780134662605 MTNNEDSLS(ph)PTSSTLSNLELDAAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MTNNEDSLSPTSSTLSNLELDAAEK 25 0 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 MT(0.009)NNEDS(0.149)LS(0.721)PT(0.053)S(0.053)S(0.008)T(0.008)LSNLELDAAEK 118.55 0.00046966 38478000.0 50989.0 46241.0 43340.0 49137.0 49394.0 61760.0 48323.0 48526.0 60379.0 48661.0 True False 50714.480889410464 47780.103731725205 49441.895281966856 55357.73916186987 55684.03311882487 57490.67656740214 45985.43187821344 52147.25653003512 45499.404487148866 45555.41331922194 1.1132481783018238 1.0488348200665885 1.0853132850647418 1.2151736781304072 1.2223362507684503 1.2619944015115359 1.009439461255202 1.1446994490999773 0.9987705339938285 1.0 15.475334878247754 1.338687633584232 1.386798396975316 0.9930569430996873 1.1464296840649042 0.3292655655739162 0.07636024092096205 0.49382226884475316 1.7966000041952566 0.07419847139077779 0.023547711833538786 21.811605472533643 -1.338687633584232 0.1533727409652169 MTNNEDSLS(ph)PTSSTLSNLELDAAEKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 MTNNEDS(0.015)LS(0.975)PT(0.009)S(0.001)STLSNLELDAAEKDR;MTNNEDS(0.194)LS(0.663)PT(0.046)S(0.046)S(0.037)T(0.012)LS(0.001)NLELDAAEKDR 153.63 3.3813e-08 673550000.0 223558.0 205021.0 195911.0 179716.0 165661.0 217860.0 201650.0 187646.0 265770.0 216380.0 True False 222354.38856762854 211845.0000471882 223493.56591106165 202468.0271733034 186756.94640032484 202799.85098727688 191895.41912219336 201649.09736708127 200274.54463554497 202570.44314776204 1.0976645215977308 1.0457843541007656 1.1032881324549286 0.9994944179769407 0.9219358140224718 1.0011324842654736 0.9473021638315618 0.9954517264889986 0.9886661722384525 1.0 17.628064161730414 3.614676062811165 4.876011274808011 0.9750687527663837 1.0780077626482596 0.7466414911462929 0.02771168788912373 0.10349461957997647 3.6671354531427243 0.00700431041397572 0.011018429605098008 4117.902530744123 -3.614676062811165 0.10293900988187588 MTNNEDSLSPT(ph)SSTLSNLELDAAEKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 MTNNEDS(0.013)LS(0.404)PT(0.554)S(0.023)S(0.005)T(0.001)LSNLELDAAEKDR 138.15 1.0423e-05 99937000.0 92275.0 94829.0 88345.0 75534.0 83999.0 102210.0 94801.0 90189.0 118800.0 96099.0 True False 91778.20165271626 97985.32593965887 100783.20809149425 85096.59665532442 94695.7747489203 95144.46327645998 90215.11345501147 96919.36115046238 89523.33183844191 89965.87954550674 1.0201445494265724 1.089138753877193 1.1202381236156966 0.9458763376206495 1.0525743229245157 1.0575616417814688 1.0027703159327048 1.077290208688933 0.99508093835907 1.0 16.4570903282815 3.773171889291516 24.999992646757377 1.0269606532413889 1.077770286763297 0.2631907534150394 0.04275753826227353 915.8187487145645 661499.8777753758 0.01071123408885287 0.019309159571071096 5931.600447752244 -3.773171889291516 0.05080963352190815 MTPHEK ddPTM_BT-474_Trastuzumab_2h_R1 5 MTPHEK 6 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;A0A140T9K1;A0A140T973;A0A140T9L4;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ;;;; 118.69 0.021654 2224405000.0 4589810.0 4338420.0 4080060.0 3771240.0 4189100.0 3275536.0 4306380.0 4239500.0 5634960.0 4333580.0 False True 4565098.972935825 4482821.687069734 4654496.983482736 4248678.59732605 4722557.054259009 3049105.9061023686 4098063.947430846 4555873.017744801 4246299.612595507 4057007.2142355056 1.125238071285033 1.1049577805383488 1.1472735289083829 1.0472445260678842 1.1640494593374584 0.7515653152904083 1.0101199556784808 1.122963992215454 1.0466581369872352 1.0 21.951984437294175 MTQNPNYYNLQGISHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MTQNPNYYNLQGISHR 16 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 144.46 1.314e-06 705810000.0 126540.0 119320.0 110360.0 114320.0 119610.0 129230.0 146380.0 128610.0 166710.0 117060.0 False True 125858.72269991552 123291.49406953684 125897.72873368397 128792.90027850641 134841.6245159867 120296.63427469853 139299.04017409694 138207.53126834735 125626.554299551 109589.13057989196 1.1484599068715378 1.1250339647475867 1.1488158366390435 1.1752342554138127 1.2304288190121677 1.0977058914341935 1.2711027036805083 1.2611426930483054 1.1463413719480833 1.0 16.74174518846407 3.7218016533161973 3.126248091072819 1.1905648492725869 1.1373855272469569 0.0 0.07767627352033629 0.6857463958592152 13.729303497444324 0.020670191957880005 0.03707702226568856 5269.891251884533 -3.7218016533161973 -0.05317932202563003 MTSSDKDFR ddPTM_BT-474_Trastuzumab_2h_R1 7 MTSSDKDFR 9 1 Q86VP6;Q86VP6-2;O75155-2;O75155;A0A3B3ISC4;F8WBB8 Q86VP6 CAND1;CAND2 Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2 0 ;;;;;; 101.11 0.003838 3864640000.0 12226140.0 12939700.0 12761550.0 11307210.0 9631210.0 12999590.0 13924340.0 11615720.0 18669480.0 13486980.0 False True 12160315.82069185 13370390.09228617 14558265.314618926 12738701.626645627 10857687.504845882 12100958.941043317 13250766.47805565 12482544.009831008 14068636.81221511 12626229.3896155 0.9630995482066211 1.0589376827956816 1.1530176480551222 1.0089078246212309 0.8599311140169714 0.9583984709636122 1.0494634676092456 0.9886200879652426 1.114238968585976 1.0 23.589920531121614 3.4962364320098502 24.813498272847596 0.9910391343885953 1.0621689881025562 0.1256292076536123 0.0741695024533097 1331.6407594803034 1728604.4088362248 0.02048150618015473 0.03116613768106475 3134.9919645712584 -3.4962364320098502 0.07112985371396097 MVDPEKPQLGMIDR ddPTM_BT-474_Trastuzumab_2h_R1 6 MVDPEKPQLGMIDR 14 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;;;; 118.47 0.00022212 5208790000.0 9851670.0 9862670.0 9305984.0 8724850.0 8442228.0 11066360.0 10475620.0 9914100.0 13355260.0 11032140.0 False True 9798629.703343432 10190943.008840082 10616185.658137027 9829415.115420977 9517295.694794316 10301368.580609383 9968874.239845423 10653940.484779736 10064035.124315398 10328059.380109766 0.948738707119952 0.9867238978569635 1.0278974265564493 0.9517194618720821 0.9214989326187594 0.9974157004217282 0.9652223978343814 1.0315529851907674 0.9744362182596628 1.0 23.300065864619125 1.7629134815927159 24.99999999991299 1.0047900538120487 0.9724193956878937 0.17446751890269574 0.03033439247689408 24.162093852870562 24821.73337504519 0.014366756076983097 0.007968023551731563 57.931327645979266 -1.7629134815927159 -0.03237065812415496 MVDREQLVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 MVDREQLVQK 10 1 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 103.63 0.004209399999999999 0.0 94275.0 94489.0 109140.0 112090.0 98542.0 109340.0 101420.0 81001.0 144840.0 117000.0 False True 93767.43387493721 97634.00924519336 124505.9633381141 126280.58250715326 111090.73959580601 101781.58315867462 96513.92713797597 87045.70593474367 109146.12275656508 109532.95983126045 0.8560659186001126 0.8913664836191968 1.1366986113578974 1.1529003023536764 1.0142220183490465 0.929232473179515 0.8811405013309165 0.7946987470149696 0.9964683043780492 1.0 16.741005534492015 2.617236965495681 3.4281373450339574 0.8903258014574944 1.0186143319016534 0.1354543705115554 0.10355046900478505 0.3924240976772176 8.541739721829464 0.0383675568828346 0.03579541781958125 414.22562843280815 -2.617236965495681 0.128288530444159 MVDVVEKEDVNEAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 MVDVVEKEDVNEAIR 15 1 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 109.35 0.00091818 247420000.0 166950.0 164270.0 162480.0 157700.0 153770.0 184560.0 191290.0 166250.0 260550.0 248080.0 False True 166051.1597498889 169737.62764668817 185355.77169852264 177664.80383065483 173351.69803380375 171801.80160750862 182036.57190123654 178656.4192003943 196340.94369112828 232247.32200802647 0.7149755627500849 0.7308485892501358 0.7980964865210233 0.7649810654200556 0.7464098898320676 0.739736415998679 0.7838048263693019 0.7692507179661685 0.8453959425389747 1.0 17.825302435746508 0.7967649478815857 1.2313440407021505 1.0003265512849648 0.752738821850238 0.9167304028005984 0.02269942194469569 0.19398836594802313 0.5391484740947641 0.021973341274419356 0.006720234059229265 6.262748157739971 -0.7967649478815857 -0.24758772943472684 MVEDCEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 MVEDCEHR 8 0 Q92896;Q92896-3;Q92896-2;H3BM42 Q92896 GLG1 Golgi apparatus protein 1 0 140.5 0.0014292 0.0 60554.0 88904.0 99097.0 82721.0 81553.0 89031.0 87838.0 67352.0 103990.0 77935.0 False True 60227.9839921819 91863.11589639717 113048.99623343504 93193.47011842487 91938.29114749815 82876.49652643091 83588.94036625439 72378.1482465262 78363.05789460933 72961.12157648958 0.8254805119606234 1.2590694045196589 1.5494415901339855 1.2773031459052406 1.2600997512231724 1.1358994315835242 1.1456641367364813 0.9920098085478002 1.074038559186026 1.0 16.1548402866892 2.234309379742847 1.496481669878266 1.0229730328338411 1.253982204946938 0.2123429641467025 0.16804093921587754 0.6012682568760696 2.645937233072243 0.09989397415724138 0.05933074171180472 171.51787197317404 -2.234309379742847 0.2310091721130969 MVEGFFDR ddPTM_BT-474_Trastuzumab_2h_R1 5 MVEGFFDR 8 0 P00367;P49448 P00367 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial 0 ;;;; 119.27 0.004014500000000001 1343640000.0 1116660.0 1368530.0 1315320.0 1275880.0 1489490.0 2035160.0 1223950.0 1055157.0 1553120.0 1338620.0 False True 1110648.026632589 1414080.6937561461 1500505.6230336106 1437406.277181078 1679167.722601096 1894474.1794513294 1164742.8625569488 1133898.1733186792 1170374.3867417602 1253188.125549759 0.886258019836695 1.1283866044739335 1.1973506550545683 1.1469995987637567 1.3399167198974733 1.511723691620718 0.9294237942495582 0.9048108182650161 0.933917552265611 1.0 20.257171574107765 2.1010094484783908 23.38925201241131 0.9306341918998041 1.203583179879581 0.4137690575764419 0.15120274175678924 7.416227332498792 1702.005016873063 0.059791822560701945 0.04415918245724695 126.18549871151261 -2.1010094484783908 0.27294898797977696 MVEKDQDGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 MVEKDQDGGR 10 1 P39019;A0A075B6E2 P39019 RPS19 40S ribosomal protein S19 0 ;;;; 164.04 5.7272e-06 3599940000.0 2702580.0 3762570.0 3495030.0 3796740.0 3419770.0 3538050.0 4095020.0 3325520.0 5332290.0 4084560.0 False True 2688029.609564864 3887804.867928404 3987099.844654654 4277406.8947114805 3855257.4389351667 3293472.931173852 3896928.2381044594 3573687.189048399 4018218.5785252955 3823879.8838322517 0.7029586941080768 1.0167173096535886 1.0426843849129552 1.1186038852310154 1.0082056853395376 0.86129089595596 1.0191032031578877 0.9345709848675707 1.050822384749774 1.0 21.866605775247116 4.740371816899106 24.421384842443782 1.0015253970653808 0.7029585533068701 0.6592833080972258 0.06524336458375932 74.50931105200844 1004534.8677207931 0.016388138408277818 0.10529290337521487 55001.15592659736 -4.740371816899106 -0.2985668437585107 MVEPENAVTITPLRPEDDYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 7 MVEPENAVTITPLRPEDDYSPR 22 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR 229.98 1.4356000000000002e-26 4687190000.0 2152310.0 2882050.0 2730160.0 2814630.0 2505160.0 2567510.0 2348230.0 1918890.0 2142040.0 2227540.0 True False 2140722.2021041187 2977977.292013984 3114542.7970238733 3170961.869409485 2824177.2767533595 2390024.076968438 2234637.143790271 2062087.315725985 1614162.9438654562 2085376.4901070604 1.0265399136604905 1.428028610728751 1.4935158288199446 1.5205704506847548 1.3542769327990123 1.1460875713841665 1.0715749191531108 0.9888321487791014 0.774039101103795 1.0 20.991876438066942 2.3253004824631094 1.410118402102766 0.9199739311754422 1.3862444552939248 0.652011309754106 0.14162347398658354 0.2585260510588476 1.0240033988942734 0.0810715690241649 0.051894285680977224 211.49518402324767 -2.3253004824631094 0.4662705241184826 MVFETGQFDDAED ddPTM_BT-474_Trastuzumab_2h_R1 1 MVFETGQFDDAED 13 0 Q9NQ92;H9KV77 Q9NQ92 COPRS Coordinator of PRMT5 and differentiation stimulator 0 129.89 0.00034534 14385000.0 41130.0 41094.0 37492.0 45650.0 45043.0 41929.0 39862.0 40292.0 44374.0 45998.0 False True 40908.56064997258 42461.78894815242 42770.5477136941 51429.28531940006 50778.95905922236 39030.546920249435 37933.722772372275 43298.79363863033 33438.62228113656 43062.3682591309 0.9499839953948278 0.9860532679632377 0.9932233047731897 1.1942976524170859 1.1791956901593597 0.9063725126630359 0.8809019175188734 1.0054903013711818 0.7765161005525113 1.0 15.394140043730633 2.7040454694732454 24.742170830226005 0.9190511430088011 1.0601020174592137 0.3729324832942694 0.09498975463080452 656.6799014062751 470739.85221226816 0.03239257808856836 0.030541573434311093 505.87762326772514 -2.7040454694732454 0.14105087445041264 MVHNGIEYGDMQLICEAYHLMK ddPTM_BT-474_Trastuzumab_2h_R1 2 MVHNGIEYGDMQLICEAYHLMK 22 0 P52209-2;P52209;K7EM49;K7EPF6;K7ELN9 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ; 303.84 2.9516e-56 1264300000.0 973090.0 914790.0 882780.0 933220.0 856420.0 953220.0 1137240.0 796030.0 1162590.0 1020870.0 False True 967850.9915604634 945238.2321477669 1007067.7507386878 1051365.5563147988 965480.010600965 887326.1450385212 1082227.3565213138 855433.8007584364 876085.2724078638 955717.2025892219 1.0126960035231853 0.9890354904012761 1.0537298564997548 1.1000801842495322 1.0102151640519745 0.9284400684999535 1.1323719543703425 0.8950700044332168 0.9166783542604235 1.0 19.86622426128459 1.6607017882910977 11.136125340733015 0.929978587030683 1.029079552020767 0.34796827392339136 0.05919355990327654 0.12013893674408362 20.97530302911892 0.02740830247753855 0.014860000830889229 45.78274079802616 -1.6607017882910977 0.09910096499008392 MVIENDLSGLIDFTRLPS(ph)PTPENK ddPTM_BT-474_Trastuzumab_2h_R1 2 MVIENDLSGLIDFTRLPSPTPENK 24 1 Q5VWQ8;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8-5;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4 Q5VWQ8 DAB2IP Disabled homolog 2-interacting protein 1 MVIENDLSGLIDFT(0.014)RLPS(0.86)PT(0.126)PENK;MVIENDLSGLIDFTRLPS(0.999)PTPENK 273.93 3.447799999999999e-52 264300000.0 264520.0 281880.0 243412.0 259460.0 274680.0 297410.0 302680.0 258510.0 419720.0 324220.0 True False 263095.8537109348 291262.20539994194 277682.29382496845 292307.609396967 309658.8698440866 276850.74672783446 288038.2120501136 277801.328887182 316285.6299598554 303528.0020212929 0.8667926911484044 0.9595892420479527 0.9148490154970567 0.9630334184997573 1.020198689353095 0.9121094096234751 0.9489675091984011 0.9152411870971096 1.0420311399726063 1.0 18.211470093104648 5.914407979042634 1.0771056693662644 0.9606975945803953 3.377468361909168e-10 0.3122371153529063 0.042916620919990746 24.63079139987854 3.147510000004945 0.012168560658473895 47.79930765233901 821122.5499586635 -5.914407979042634 -0.9606975942426484 MVINHLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MVINHLEK 8 0 P50990-2;P50990;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 99.802 0.006554899999999999 2808300000.0 3308200.0 3610700.0 3200000.0 3056050.0 2866920.0 3603800.0 3890800.0 3095990.0 4501100.0 3535700.0 False True 3290389.0187755753 3730879.9667857625 3650532.185101385 3442945.616656134 3232005.2684338507 3354677.788432706 3702587.1397006186 3327028.4949186756 3391864.216649924 3310048.598934936 0.9940606370052433 1.1271375193664033 1.1028636214815715 1.0401495669169207 0.9764223007099664 1.01348294085837 1.1185899629667035 1.005129802622597 1.0247173463680606 1.0 21.658420968510054 3.5675549025727955 6.284100598741083 1.026600201334488 1.0793220159052253 0.1875046201423417 0.047376973856434364 0.3848490371111852 22.07160152217403 0.01265742218076841 0.019652787697578254 3694.4934639669727 -3.5675549025727955 0.052721814570737324 MVIQGPS(ph)SPQGEAMVTDVLEDQK ddPTM_BT-474_Trastuzumab_2h_R1 4 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQK;MVIQGPS(0.622)S(0.378)PQGEAMVTDVLEDQK;MVIQGPS(0.668)S(0.332)PQGEAMVTDVLEDQK;MVIQGPS(0.755)S(0.245)PQGEAMVTDVLEDQK 272.1 7.9948e-52 502968000.0 768711.0 608819.0 555674.0 512304.0 562230.0 747920.0 683373.0 673381.0 895230.0 709261.0 True False 764572.3453878202 629083.1723761433 633908.0691950086 577161.6338722878 633826.6579017069 696218.050814304 650315.6372516269 723632.1095794331 674612.5619674108 663995.3557511078 1.1514724293861065 0.9474210428242046 0.9546875045201715 0.8692254077882907 0.9545648962931762 1.0485284946409694 0.979397870209489 1.0898150164933977 1.0159898802368774 1.0 19.340813625258594 2.7402682315722235 24.512153956097386 1.0330460078591042 0.9668582097997638 0.10345879572401862 0.07212151631024358 223.4500680246702 3207527.563480663 0.022777560594914134 0.023056441796736375 549.8803894362275 -2.7402682315722235 -0.06618779805934039 MVIQGPS(ph)SPQGEAMVTDVLEDQKEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 MVIQGPS(0.592)S(0.408)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.856)S(0.144)PQGEAMVTDVLEDQKEGR 189.45 5.2132e-18 1829930000.0 536510.0 581000.0 514160.0 578800.0 542940.0 637960.0 672280.0 574340.0 931300.0 696840.0 True False 533621.4897718652 600338.2337780826 586549.2588411652 652076.0206542994 612080.1907424951 593859.3267963054 639759.2480410018 617200.1672394254 701793.5937806485 652367.0746052612 0.8179773482509868 0.9202460656699136 0.8991092310967388 0.9995538494165452 0.9382450687181858 0.9103146831186136 0.9806737233452681 0.9460933748271786 1.0757648892769376 1.0 19.31532444455773 7.508974400926499 0.2999409707965255 0.9975950377052425 1.9560413396610027e-19 0.5784427091038611 0.04323033219309177 31.320628497135182 0.5871097152763062 0.04336770434874385 15.877311566580323 32283038.26818154 -7.508974400926499 -0.9975950377052425 MVIQGPSS(ph)PQGEAMVTDVLEDQK ddPTM_BT-474_Trastuzumab_2h_R1 7 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 MVIQGPS(0.181)S(0.819)PQGEAMVTDVLEDQK;MVIQGPS(0.206)S(0.794)PQGEAMVTDVLEDQK;MVIQGPS(0.02)S(0.98)PQGEAMVTDVLEDQK;MVIQGPS(0.347)S(0.653)PQGEAMVTDVLEDQK;MVIQGPS(0.023)S(0.977)PQGEAMVTDVLEDQK;MVIQGPS(0.097)S(0.903)PQGEAMVTDVLEDQK;MVIQGPS(0.121)S(0.879)PQGEAMVTDVLEDQK 292.25 9.596799999999996e-62 1167384000.0 1580818.0 1280644.0 1159693.0 1090504.0 1176872.0 1476531.0 1506799.0 1413410.0 1829940.0 1468175.0 True False 1572307.0515333922 1323269.4613743534 1322967.694167744 1228561.6945881064 1326739.6733331503 1374461.887350111 1433909.375838839 1518885.8313505554 1378975.806939718 1374474.8145321426 1.1439329661843165 0.962745513692647 0.9625259627751482 0.8938408194887851 0.9652702685459967 0.9999905948207308 1.0432416517773206 1.1050663244546746 1.0032746998053272 1.0 20.390449040902233 2.308088310291394 3.4502721999051693 1.0535613900862824 0.9785108810421881 0.10212285353545969 0.06583086485354825 0.38105684963289466 9.130589551694868 0.025331092494798656 0.019970313226244523 203.2770316415055 -2.308088310291394 -0.07505050904409427 MVIQGPSS(ph)PQGEAMVTDVLEDQKEGR ddPTM_BT-474_Trastuzumab_2h_R1 14 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 MVIQGPS(0.04)S(0.96)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.012)S(0.988)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.19)S(0.81)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.273)S(0.727)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.257)S(0.742)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.183)S(0.817)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.264)S(0.736)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.019)S(0.981)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.196)S(0.803)PQGEAMVT(0.001)DVLEDQKEGR;MVIQGPS(0.07)S(0.93)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.012)S(0.988)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.366)S(0.634)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.152)S(0.848)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.292)S(0.708)PQGEAMVTDVLEDQKEGR 235.07 4.0107e-45 6321937000.0 2399848.0 2593419.0 2436195.0 2599017.0 2470504.0 2833727.0 3101548.0 2657257.0 4068332.0 3178585.0 True False 2386927.48501618 2679739.3836601074 2779190.080213456 2928052.285716786 2785108.0405755616 2637838.1223658496 2951514.2741760486 2855555.010617642 3065746.0914558237 2975724.9839764703 0.8021330928997752 0.9005332811633565 0.9339539423766291 0.9839794676872393 0.9359426881088363 0.8864522550201862 0.9918639289817472 0.9596165727659938 1.0302518236611564 1.0 21.504809768287863 6.005943733521507 0.6890445584120368 0.9700940394958034 2.714104475614457e-26 0.6673335296287883 0.03655955072775815 9.289418140290886 0.8664904121642565 0.014102691308798631 10.457889460983465 1013780.0335548895 -6.005943733521507 -0.9700940394958034 MVIQLRPGRS(ph)PEPDGPAPAFLR ddPTM_BT-474_Trastuzumab_2h_R1 3 MVIQLRPGRSPEPDGPAPAFLR 22 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 MVIQLRPGRS(1)PEPDGPAPAFLR;MVIQLRPGRS(1)PEPDGPAPAFLR;MVIQLRPGRS(1)PEPDGPAPAFLR 199.92 8.919e-23 3944102000.0 678338.0 792394.0 772221.0 923846.0 826806.0 830917.0 876569.0 699857.0 894280.0 764452.0 True False 674685.9035784362 818768.3552777116 880943.0045347417 1040804.8088759359 932094.843236894 773477.663558227 834166.0086512364 752083.8831418366 673896.6767380622 715664.0188797148 0.9427411268133546 1.1440680733948232 1.2309449424518382 1.4543204372705358 1.3024195972517598 1.0807832211112312 1.1655832718221912 1.0508896120265103 0.9416383372088004 1.0 19.44892292218046 1.7506043041370762 1.384302368769284 0.9685752749999353 1.2126689811561997 0.33280034677314296 0.12724492380896257 0.49486104916338447 1.8052172560442972 0.10970969233455216 0.042966294656894534 56.31243462509353 -1.7506043041370762 0.24409370615626436 MVMIQDGPLPTGADKPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 MVMIQDGPLPTGADKPLR 18 1 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 0 138.66 2.4444e-06 0.0 254830.0 261460.0 216030.0 251820.0 242760.0 284490.0 257710.0 260700.0 317680.0 263370.0 False True 253458.02359427477 270162.5380440926 246445.146233579 283700.386180314 273674.0470487491 264823.8759174257 245243.58275219644 280154.7578077766 239392.02069390798 246561.50111759853 1.0279708001671637 1.0957206896434226 0.999528089813324 1.1506272670079256 1.1099626089566155 1.0740682333496863 0.9946548088025571 1.1362469669348567 0.9709221415703864 1.0 17.91158802485576 1.2182689613650481 24.999509627793007 0.9854609710204049 1.0747686911842218 0.3240375484258954 0.05089635468631128 309.6008724879978 381421.28902753815 0.04641200394846951 0.011659343719213844 16.52985185654859 -1.2182689613650481 0.08930772016381694 MVMIQDGPQNTGADKPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVMIQDGPQNTGADKPLR 18 1 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 ; 158.45 4.1506e-11 1180820000.0 815400.0 796430.0 702780.0 771070.0 665490.0 815550.0 920220.0 714690.0 976030.0 842890.0 False True 811009.9769994576 822938.6910978988 801725.315326735 868687.3829404109 750236.2068317352 759172.9480981987 875705.4430182232 768023.7969222862 735500.4846319407 789096.0385655656 1.0277709396105037 1.0428878753387902 1.0160047397831666 1.1008639512619123 0.9507539895847525 0.9620792793209789 1.1097577483852255 0.9732957198954072 0.9320798086490816 1.0 19.58984137154552 3.2286334748238734 24.999993017410475 0.992902500788686 1.0443910872764637 0.24749711041691336 0.04978894160692686 341.4903330359138 859988.8505572038 0.01469947258902218 0.017763624368016998 1692.9084581351947 -3.2286334748238734 0.051488586487777654 MVMISLEGEDGLDEIYSFSESLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 MVMISLEGEDGLDEIYSFSESLRK 24 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 171.06 1.1485e-11 33805000.0 21390.0 27713.0 23555.0 26196.0 23821.0 24184.0 27163.0 23570.0 39960.0 29259.0 False True 21274.838616652414 28635.41045213774 26871.339256269726 29512.41091406362 26854.463151871238 22512.21700301252 25849.021917263242 25328.913086034867 30112.393436566843 27391.665570109835 0.776690214846512 1.0454059603949422 0.9810042104775148 1.0774230153520847 0.9803881068544879 0.8218637506869302 0.943682006159934 0.9246941563741246 1.099326850333114 1.0 14.741449372379192 1.2475573515341114 24.995800575327017 1.0496634346218614 0.9488157305504124 0.18273400672676465 0.08898738685579852 296.91029672338794 824926.6808722657 0.060978557688719494 0.02154537872976297 17.68305719088851 -1.2475573515341114 -0.10084770407144905 MVNDAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 MVNDAEK 7 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 84.743 0.049602 147960000.0 327770.0 330480.0 322010.0 270260.0 275520.0 267160.0 374700.0 303370.0 535020.0 334670.0 False True 326005.3227386703 341479.8270206214 367346.20903890487 304474.88828961813 310605.8388650168 248691.85802699428 356574.32950699603 326009.00988164643 403171.48990070086 313311.0740745981 1.0405164378615284 1.0899066623457951 1.1724648103291786 0.9717974035514746 0.9913656572223899 0.7937538076543753 1.1380840289804028 1.040528206175135 1.2868089361077208 1.0 18.257236237539185 -0.46937844025980446 6.703839754794783 0.9999999998769371 1.0528725764086384 0.01765637915940832 0.12468557121657259 0.0 0.0 0.11950252333023277 0.028167014871903737 0.3393294551232295 0.46937844025980446 0.0528725765317013 MVNHFIAEFK ddPTM_BT-474_Trastuzumab_2h_R1 4 MVNHFIAEFK 10 0 P11142;E9PKE3;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;; 136.96 0.00010389 21019800000.0 26304500.0 26350000.0 26388700.0 22600400.0 19538400.0 24740300.0 26908300.0 24487800.0 41327500.0 27995800.0 False True 26162879.494704675 27227043.821088664 30103999.585307755 25461608.322728798 22026499.426830143 23030061.293401867 25606642.72931177 26315203.98252883 31142891.38512804 26209084.075589765 0.9982370776196592 1.0388399587930275 1.1486093714104866 0.9714802794822907 0.8404146960383428 0.8787053079375357 0.9770140251929259 1.004048974265297 1.188247986664038 1.0 24.643563601140226 -0.5863522840797026 6.528101849644833 0.9999999999986827 0.999735725536834 0.0 0.10029776890475069 0.0 0.0 0.1021171966638199 0.0240692542582457 0.25920759102656526 0.5863522840797026 -0.0002642744618487347 MVNHFIAEFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVNHFIAEFKR 11 1 P11142;E9PKE3;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 143.79 2.4031e-05 452970000.0 554420.0 761880.0 833040.0 670470.0 646790.0 648120.0 776370.0 555540.0 1291290.0 751020.0 False True 551435.0643218525 787238.7152338139 950324.7910865181 755351.4332551621 729154.8726753202 603316.9899103739 738814.0170785884 596997.2157749605 973068.8818995082 703089.2606194289 0.7843030681993812 1.1196853078658155 1.351641739271159 1.0743322015609933 1.0370729770967164 0.858094446470204 1.0508111252157166 0.8491058663717885 1.383990534917607 1.0 19.423348332551534 4.745802947564195 23.908378392499465 1.0645389806615284 0.7843028219681526 0.21391561360362932 0.1678550605640099 810.6784158765405 2676083.5310105104 0.04092727817763535 0.4113797201394147 55693.29943868824 -4.745802947564195 -0.2802361586933758 MVQEAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 MVQEAEK 7 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 A0A0G2JIW1;P11142 HSPA1B;HSPA1A;HSPA8 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein 0 ; 144.38 0.0054866 481570000.0 593810.0 574190.0 659280.0 492130.0 338850.0 444570.0 591270.0 458300.0 1001040.0 573890.0 False True 590612.9929384933 593301.5670448149 752100.893435513 554433.607540774 382000.5389786977 413837.9223052136 562668.0112292547 492500.67320024536 754347.1052487696 537263.8488680519 1.099297848129632 1.1043020450656182 1.3998725114673098 1.0319577777453233 0.7110110605497193 0.7702694368458228 1.047284332297299 0.9166830678034322 1.4040533470437015 1.0 19.035271240430035 3.490605629378844 24.35219932283771 0.9551573455767999 1.1955458288705823 0.2147696562407645 0.19147208097060925 650.3687821953177 1174535.9187477494 0.05233386473785427 0.07727260856533372 3094.607896418123 -3.490605629378844 0.24038848329378237 MVQEAEKYK ddPTM_BT-474_Trastuzumab_2h_R1 1 MVQEAEKYK 9 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 A0A0G2JIW1;P11142 HSPA1B;HSPA1A;HSPA8 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein 0 90.685 0.0095605 0.0 141940.0 167650.0 163560.0 150360.0 163430.0 177090.0 182190.0 157160.0 279720.0 200340.0 False True 141175.81081101645 173230.12890343487 186587.8263109945 169395.56058324195 184241.84177449808 164848.1851250203 173376.7736666126 168888.07724230987 210786.75405596808 187554.12968029673 0.7527203535942589 0.9236273773268633 0.9948478694073579 0.9031822486233295 0.9823395629227427 0.8789365790346456 0.9244092570083595 0.9004764519458737 1.1238715693185402 1.0 17.516947503918157 4.724877502152944 3.81295014519015 0.9513202603335686 0.7353795468603281 0.4559027319593596 0.06777228804758086 0.21417284903919176 6.119240232351507 0.015617269739599756 0.1270221561662176 53073.472316963904 -4.724877502152944 -0.2159407134732405 MVQFEENGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVQFEENGR 9 0 P49368;P49368-2;B4DUR8;Q5SZX6;E9PRC8;E9PQ35;Q5SZW8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 223.88 7.684100000000002e-07 679270000.0 555930.0 666940.0 635660.0 653030.0 611710.0 677480.0 671250.0 574750.0 716530.0 673820.0 False True 552936.9346496299 689138.6947262571 725155.4027442338 735703.5310433265 689607.6426107694 630647.4022163799 638779.0730759847 617640.7635213636 539950.7825100912 630816.2307136751 0.8765420224271395 1.092455553888648 1.149550958642627 1.1662723551215335 1.0931989524597052 0.9997323650073108 1.0126230778071466 0.9791136204954565 0.8559557541809234 1.0 19.266860255156363 2.137589359005061 1.3460417176072692 0.9397751521334766 1.082298940445215 0.30034074171635305 0.08312112420563567 0.5339241573487998 1.839891868003512 0.05577059151806591 0.029442014879244527 137.2743383117716 -2.137589359005061 0.1425237883117384 MVQFEENGRK ddPTM_BT-474_Trastuzumab_2h_R1 4 MVQFEENGRK 10 1 P49368;P49368-2;B4DUR8;Q5SZX6;E9PRC8;E9PQ35;Q5SZW8 P49368 CCT3 T-complex protein 1 subunit gamma 0 ;;; 139.31 6.6839e-05 818940000.0 1140100.0 1333240.0 1097450.0 1310250.0 1265610.0 1359020.0 1465470.0 1184850.0 1843100.0 1473480.0 False True 1133961.8282770182 1377616.0874393994 1251961.4207935983 1476127.5156570394 1426777.9316418173 1265074.1461889697 1394579.617460951 1273269.5235463916 1388892.7012746825 1379441.2448903064 0.8220443114031951 0.9986768864149397 0.9075858978634169 1.0700908945015788 1.0343158412341622 0.9170917216481872 1.0109742786267408 0.9230328064082515 1.0068516556391118 1.0 20.395652578019284 4.742435080951573 24.801173280470465 0.981146699628712 0.822044242472937 0.4799944317836231 0.05083568515250676 300.33667239610423 1922426.1967858952 0.011871907753627873 0.08880362721682741 55263.07936163624 -4.742435080951573 -0.1591024571557751 MVS(ph)PLRR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVSPLRR 7 1 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 MVS(1)PLRR;MVS(1)PLRR 66.962 0.040063 302340000.0 186620.0 213760.0 200230.0 198152.0 211200.0 234150.0 230520.0 210489.0 273480.0 239410.0 True False 185615.25865543124 220874.8723793514 228420.64356964052 223238.02288301766 238095.0681195249 217963.7616298123 219368.86692808341 226196.75802148491 206084.5184442518 224130.64883078702 0.8281565222057876 0.9854737561845295 1.0191405984020165 0.9960173856077877 1.062304818022816 0.9724853016169576 0.9787544366308482 1.00921832512187 0.9194838792433087 1.0 17.773980418656908 4.736214068685731 4.74611419487331 0.9968086207770244 0.8187618459867426 0.6755646984549255 0.03443045595047459 0.09766239249436862 6.219244750112923 0.007992841210100975 0.05754781944627751 54477.11105455757 -4.736214068685731 -0.17804677479028175 MVSDEYEQLSSEALEAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVSDEYEQLSSEALEAAR 18 0 F8W7C6 F8W7C6 RPL10 0 ; 280.97 6.2757e-39 130217000.0 73161.0 73638.0 74811.0 67924.0 75478.0 74895.0 67390.0 78077.0 71350.0 77888.0 False True 72767.10930495127 76088.99631488901 85343.73853113111 76523.17143559546 85089.67590684423 69717.68493386627 64130.08824520009 83903.50220697268 53766.74854101704 72917.12115672836 0.997942707427318 1.0434997310349514 1.1704211188987141 1.0494540955767608 1.1669368531973736 0.9561222910050823 0.8794928711921939 1.150669429565522 0.7373679554003588 1.0 16.153969982960252 2.713497231985165 23.80591217276425 0.964826113337679 1.0860076953607642 0.28506970109419516 0.10929015062343635 635.3794911153847 603500.012272304 0.034671214613264265 0.03270358752945939 517.0079627615297 -2.713497231985165 0.12118158202308527 MVSDINNGWQHLEQAEK ddPTM_BT-474_Trastuzumab_2h_R1 3 MVSDINNGWQHLEQAEK 17 0 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 ;; 254.53 4.8481e-27 3872930000.0 4051140.0 3392870.0 3125610.0 2761260.0 3007290.0 3982840.0 3688380.0 3554200.0 4417470.0 3902910.0 False True 4029329.1123639625 3505799.626916771 3565668.7197108506 3110835.2328816312 3390250.5558956754 3707515.6453968887 3509958.968420114 3819432.4518619026 3328843.7095653373 3653822.9423506395 1.1027707625514405 0.9594880984192847 0.9758734279053282 0.8513918933576775 0.9278639412435792 1.0146949383955937 0.9606264517464624 1.0453249957987074 0.9110577502214076 1.0 21.8009752945918 -0.23238062373311233 8.348696089362315 1.0000120947622733 0.9730782899932593 0.015189433428553611 0.06694601384696705 0.0 0.0 0.06452841355468443 0.015209492934575767 0.5856246872066018 0.23238062373311233 -0.02693380476901397 MVSQSQPGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 MVSQS(0.005)QPGS(0.995)R;MVSQSQPGS(1)R;MVSQSQPGS(1)R 115.05 0.0013365 983030000.0 651860.0 641450.0 590060.0 653400.0 649470.0 736030.0 604240.0 609620.0 828920.0 704400.0 True False 648350.4581884553 662800.275485286 673135.319106538 736120.373005388 732176.1547897154 685149.9785282539 575010.6027790426 655112.9399876358 624643.7729589334 659444.5889328186 0.9831765535261773 1.0050886558306558 1.0207610016117883 1.1162732780879345 1.110292156577702 1.0389803632129795 0.8719619698594906 0.9934313678239551 0.9472270808526861 1.0 19.330891913852454 2.4044573776607696 12.280336572630867 0.9541628709455733 1.0499049376439216 0.44380303224619067 0.05080378108031358 0.6685508553680937 110.79296965024629 0.0185393083583945 0.01550825514767962 253.77999100920258 -2.4044573776607696 0.09574206669834828 MVSSCLDAHTGISHEDLIQNFLNAGSFPEIQGFLQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVSSCLDAHTGISHEDLIQNFLNAGSFPEIQGFLQLR 37 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ; 203.49 1.4211000000000001e-30 140696000.0 56203.0 76617.2 74975.3 76985.6 67717.3 68637.0 73452.5 48773.4 72095.4 74176.1 False True 55900.40929274033 79167.35718592456 85531.17054301001 86731.96906648853 76340.6967631169 63892.28574411876 69899.32195920114 52413.11877430687 54328.4546988654 69442.11779264586 0.8049928641240311 1.1400481394060915 1.2316901221014898 1.2489822001896624 1.0993428655368804 0.9200797408699588 1.0065839605860019 0.754774198143156 0.7823559595502277 1.0 16.083523326213722 2.421497014523698 1.5992678453723057 0.8399563728154232 1.1214045978531466 0.36757593466231064 0.13707540659732614 0.3659798274782482 1.8984967374645578 0.0675435111508614 0.04937477035857662 263.93501785835184 -2.421497014523698 0.2814482250377234 MVVNEGSDGGQSVYHVHLHVLGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 MVVNEGSDGGQSVYHVHLHVLGGR 24 0 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 ; 195.39 5.4702e-20 5982800000.0 736450.0 991380.0 999180.0 1172220.0 930780.0 908390.0 992320.0 211168.0 986620.0 501950.0 False True 732485.0350272863 1024377.4839981344 1139855.8589717513 1320622.931809576 1049309.315834713 845595.137420052 944317.6905694762 226926.42844937675 743480.7210306708 469915.1212589843 1.5587602992319793 2.1799202401779474 2.4256632898253607 2.810343553685605 2.2329762724456086 1.7994635608970309 2.0095494863827428 0.48290939827899426 1.5821596015866795 1.0 18.842040666977606 1.869372209356168 5.961020508526534 0.9990696411793294 2.187208959476372 0.6240378212222777 0.40056030755060396 0.14623899914775695 6.34490030311893 0.18310841765702698 0.11024829826783478 74.02394208172988 -1.869372209356168 1.1881393182970428 MWDLSSNQAIQIAQHDAPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 MWDLSSNQAIQIAQHDAPVK 20 0 P78406;E9PQ57;E9PPG9;B0QZ36 P78406 RAE1 mRNA export factor 0 ; 293.44 1.5686e-54 1188760000.0 1018160.0 1050010.0 930090.0 962200.0 940680.0 1139150.0 1079570.0 1034670.0 1232570.0 1129460.0 False True 1012678.3396882103 1084958.948105552 1061038.5875127949 1084014.4213434116 1060470.0221528166 1060403.2417706638 1027347.0747421094 1111882.3293478012 928819.6390918221 1057376.8958206445 0.9577269407823187 1.0260853555566871 1.0034629957460046 1.0251920820551819 1.0029252826919124 1.0028621260422665 0.971599699977151 1.0515477818198915 0.8784187008086201 1.0 20.012058277939154 1.2469913337853489 24.999992884142486 0.939209337491006 1.0068579917066447 0.33470759290084917 0.03714026992242292 163.2747709445581 484176.2755401982 0.023308409263031956 0.00820678919619488 17.660025802887546 -1.2469913337853489 0.0676486542156387 MWDPHNDPNAQGDAFK ddPTM_BT-474_Trastuzumab_2h_R1 7 MWDPHNDPNAQGDAFK 16 0 P08621;P08621-2;M0QYR1;P08621-3 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;;;;; 174.87 3.7179e-09 6047200000.0 11258000.0 11112790.0 10517250.0 10308270.0 10369980.0 12450160.0 12062460.0 11290930.0 15867030.0 12725200.0 False True 11197388.178881373 11482672.497326594 11997987.382424228 11613295.92506927 11690535.485313041 11589509.743724203 11478952.726727951 12133516.530780813 11956813.063809028 11913066.841408178 0.9399249016181791 0.9638720784655054 1.007128352601941 0.9748367972471249 0.9813203972530693 0.9728401509039355 0.9635598355604532 1.0185048646421073 1.0036721209561918 1.0 23.506041525552014 4.465448913133649 4.533986673329939 0.9895169801396974 0.9441004712615729 0.4879129556498597 0.01651967924653432 0.15876385407675608 8.189103953528397 0.004354730192671889 0.015144134887259273 29204.44202726331 -4.465448913133649 -0.04541650887812443 MWGT(ph)SPEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MWGTSPEDK 9 0 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 MWGT(0.66)S(0.34)PEDK 150.15 0.0009605 127200000.0 472940.0 421340.0 356140.0 362820.0 362060.0 491990.0 479700.0 438390.0 660960.0 443350.0 True False 470393.743588574 435364.04719459196 406281.41637562757 408752.9747992273 408166.1949022496 457979.8893198865 456495.07836804393 471104.8878993144 498075.26441024075 415055.023428969 1.1333286360502886 1.0489309190811384 0.9788615808553321 0.9848163537988832 0.9834026137792347 1.103419699721484 1.0998423163192164 1.1350420096287246 1.2000222531832083 1.0 18.66294308021222 2.6147354306822517 5.386752573290974 1.1186034327152987 1.022530373632806 0.292879563851992 0.06262065254147846 0.2640850263662276 10.550058759298105 0.02071046070566088 0.01943944781919457 411.8465484746742 -2.6147354306822517 -0.09607305908249275 MWGTS(ph)PEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 MWGTSPEDK 9 0 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 MWGT(0.001)S(0.999)PEDK 206.27 1.4261e-05 147530000.0 511600.0 432640.0 360230.0 336870.0 328460.0 491870.0 486270.0 438100.0 666680.0 444710.0 True False 508845.6024441038 447040.1608635973 410947.25282470963 379517.70745994075 370287.43406505254 457868.1846374364 462747.26236820745 470793.24662672356 502385.64705431403 416328.22706461436 1.2222222020154563 1.0737685600025781 0.987075163560626 0.9115829357422826 0.8894122713605573 1.0997769424996855 1.1114962481186481 1.1308223080287472 1.2067057057275714 1.0 18.66736185099228 2.502471831404463 24.314190171577525 1.1213218954185717 1.0106899517350139 0.18092042649600826 0.09798425225239292 840.2935533669071 805939.9827198305 0.03349075132812243 0.03144367141402317 318.03274037337303 -2.502471831404463 -0.11063194368355789 MWMT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 MWMTPK 6 0 Q7L775 Q7L775 EPM2AIP1 EPM2A-interacting protein 1 1 MWMT(1)PK 48.504 0.057111 0.0 61682.0 244480.0 213310.0 279210.0 194610.0 109920.0 133910.0 68527.0 45833.0 127880.0 True False 61349.91096551442 252617.36900871916 243342.1938762424 314557.9573719534 219392.42995615877 102321.48912384774 127432.26171412285 73640.83271305531 34538.07128073491 119718.58891642379 0.5124510029795217 2.1100931049652845 2.0326182932720744 2.627477990001603 1.8325677903647681 0.8546833875170291 1.0644317049467065 0.6151161100342102 0.28849380529239393 1.0 16.869287653914405 2.7228744059870276 4.265073361364471 0.7425931926928515 1.9028413298368756 0.4888084531365955 0.5395428208693368 0.17531840370370327 7.906034033297536 0.17799418669386965 0.17534655912515645 528.2924523113132 -2.7228744059870276 1.160248137144024 MWVFEETVNGR ddPTM_BT-474_Trastuzumab_2h_R1 1 MWVFEETVNGR 11 0 Q8N335;C9K0P5;C9JFA7;C9JM46 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein;Glycerol-3-phosphate dehydrogenase [NAD(+)] 0 150.85 0.0038486 0.0 50947.0 69122.0 61269.0 70752.0 60800.0 63481.0 55196.0 54917.0 67504.0 55971.0 False True 50672.70701274383 71422.68398486858 69895.14264030512 79709.19594563394 68542.5196101662 59092.70788820038 52525.95861080374 59015.18540287554 50868.54370725751 52398.88286081604 0.9670570104966293 1.3630573799556815 1.3339052060702006 1.521200292711595 1.3080912391249164 1.1277474759369344 1.0024251614356978 1.1262680076526437 0.9707944316747462 1.0 15.677248433519406 2.622346587473401 3.36459918533901 1.0455242250314452 1.3170371656071527 0.4736187963637878 0.13535445727598525 0.22779550307409585 4.817805924511503 0.04679527857206625 0.04373528349063851 419.12791552481093 -2.622346587473401 0.2715129405757075 MYEEHLK ddPTM_BT-474_Trastuzumab_2h_R1 7 MYEEHLK 7 0 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 ;;;;;; 122.79 0.0043066 13792120000.0 17446060.0 16586160.0 15388410.0 14399930.0 14477080.0 18463070.0 16718000.0 15082440.0 22362690.0 16624900.0 False True 17352132.351399466 17138220.30905457 17554964.369542517 16222959.6615419 16320650.32562411 17186761.428291865 15909286.471038057 16207968.25987849 16851704.69419365 15563884.648707032 1.1148972601027978 1.1011531308463098 1.1279294832733737 1.0423464339212782 1.0486231872053835 1.1042719614167567 1.0221925200634097 1.0413832167038686 1.0827441268394136 1.0 23.89169885718088 7.999999994479672 0.12665719478634116 0.9899067307259056 1.420162967343822 0.5186604539264359 0.028508073785356705 67.56665235680144 0.5816331099750359 0.16076134441433498 5.1742332050962645 99999998.72889747 -7.999999994479672 0.43025623661791645 MYEEHLKR ddPTM_BT-474_Trastuzumab_2h_R1 5 MYEEHLKR 8 1 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 ;;;; 149.65 0.00032572 5044060000.0 2383330.0 2929330.0 2676390.0 2825370.0 2649130.0 2908930.0 3198390.0 2753910.0 4097020.0 2988210.0 False True 2370498.4160928554 3026830.97823262 3053202.448401088 3183061.5523082907 2986481.002876315 2707842.515984668 3043671.65666368 2959420.748271628 3087364.318255333 2797499.8794647097 0.847363187928516 1.081977161268651 1.0914039606626564 1.137823660216692 1.0675535769630724 0.9679508963921037 1.0879970644524475 1.057880563282777 1.1036155321822885 1.0 21.415706638364746 4.740683417975312 24.908100171158946 1.0685304836041056 0.8473631076860718 0.6614764992640093 0.04694946127267107 108.65603024946729 1274835.5338192172 0.011192345023879691 0.07392166880465702 55040.63275595959 -4.740683417975312 -0.22116737591803382 MYFPDVEFDIKS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 MYFPDVEFDIKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK 229.96 6.6131e-13 3535380000.0 3398850.0 2233820.0 2093920.0 1806830.0 1523700.0 2801680.0 2516450.0 2302240.0 4769910.0 2758520.0 True False 3380550.9692477374 2308171.348327297 2388725.735321088 2035574.4927415461 1717734.1633225393 2608006.456045326 2394719.6997274673 2474044.8393378444 3594429.594019381 2582468.891912208 1.3090384088787934 0.8937847637026886 0.9249775448610879 0.7882280786098028 0.6651519283357681 1.009888817717455 0.9272985658132282 0.9580153499955307 1.391857847843371 1.0 21.300319540000455 1.382860303999244 7.905821758403185 1.1951170523383448 0.9201868313761926 0.25440441664290137 0.17871046414966574 0.30328470826824616 21.78543680527176 0.11729291985267723 0.0429774044625244 24.146839975998876 -1.382860303999244 -0.27493022096215214 MYPIDFEKDDDSNFHMDFIVAASNLR ddPTM_BT-474_Trastuzumab_2h_R1 7 MYPIDFEKDDDSNFHMDFIVAASNLR 26 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;;;;; 246.77 1.1614999999999999e-45 2178241000.0 1944746.0 1878792.0 1858401.0 1759764.0 1641508.0 2216398.0 2255325.0 1890480.0 2888840.0 2251947.0 False True 1934275.7036175942 1941326.455966252 2120047.7072889367 1982549.9419673297 1850544.3138198168 2063183.6230996933 2146226.313571835 2031557.2172629265 2176924.090472764 2108225.814471173 0.9174898107880286 0.9208342117057389 1.0056075078564244 0.9403878504659294 0.8777732921764868 0.9786350252129997 1.0180248713585711 0.9636335933836015 1.0325858243125738 1.0 21.00759797328682 2.4919593429493903 24.465855168316207 0.9973430805685858 0.9354757914018816 0.4915669505360529 0.03409283202221122 503.1543153838259 829629.6405741965 0.011497077773394454 0.010487136832224972 310.42689642924364 -2.4919593429493903 -0.06186728916670414 MYPPRS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 MYPPRSPK 8 1 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6 Q8WWM7 ATXN2L Ataxin-2-like protein 1 MYPPRS(1)PK 59.01300000000001 0.061354 882400000.0 540430.0 495990.0 455580.0 455760.0 359640.0 465240.0 549450.0 491260.0 744220.0 500570.0 True False 537520.3849274181 512498.727317714 519721.70402765315 513459.16926987487 405438.02224671387 433079.05385715986 522871.0043971684 527920.315767734 560816.9530370819 468623.1940404613 1.1470204457720634 1.093626465431552 1.1090396519784294 1.095675962691557 0.865168492304092 0.924151982583618 1.115759977411667 1.126534756455424 1.1967332393467927 1.0 18.838068835165934 -0.16978662111663892 7.237268324157427 1.0000000107431213 1.0721881203930568 0.05076368229965322 0.09649070860933397 0.0 0.0 0.10096604873453849 0.023797925555317817 0.6764152321480457 0.16978662111663892 0.0721881096499355 MYS(ph)FDDVLEEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 MYSFDDVLEEGK 12 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;E9PJ10;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 MYS(1)FDDVLEEGK;MYS(1)FDDVLEEGK 248.36 1.0028e-16 108867000.0 540710.0 155080.0 122112.0 190552.0 96998.0 167815.0 138385.0 183591.0 321900.0 227160.0 True False 537798.877438529 160241.74405216036 139304.30818346894 214675.86366226347 109350.1203478111 156214.34404401848 131690.78886796295 197291.49267620823 242572.05823901072 212662.4543185397 2.5288849372206474 0.7535027495363136 0.6550489066340307 1.0094676295831135 0.5141957036949237 0.7345647568330536 0.6192479499493968 0.9277213192540896 1.1406435565521615 1.0 17.698205821558748 4.739510652515204 24.988915094110684 0.8007243841297176 2.528885484535818 0.8804245173863029 0.18916091797002052 24.023856719136706 631810.8429726107 0.04443106028000992 0.27013207742544054 54892.20195783592 -4.739510652515204 1.7281611004061004 MYS(ph)FDDVLEEGKRPPTMTVSEASYQSER ddPTM_BT-474_Trastuzumab_2h_R1 1 MYSFDDVLEEGKRPPTMTVSEASYQSER 28 2 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 MY(0.022)S(0.978)FDDVLEEGKRPPTMTVSEASYQSER 46.68 0.060428 96377000.0 62391.0 35863.0 35129.0 33317.0 30966.0 38949.0 37484.0 41083.0 73183.0 53094.0 True False 62055.09378829176 37056.67827535868 40074.8578532583 37534.92878393104 34909.3365501383 36256.54730608398 35670.755717214444 44148.82207524696 55148.030251958735 49705.495463939646 1.2484553912818654 0.7455247740613021 0.8062460192622326 0.7551464568170715 0.7023234800156923 0.7294273393248315 0.717642091367802 0.8882080676024254 1.1094956349840137 1.0 15.60111774522594 1.4139265405502006 4.4118689885900775 1.0500912474882582 0.8022045826964619 0.2737563592905292 0.15284012636411182 0.25723625572243114 8.435162984940042 0.10619606383688986 0.03807655941848536 25.937406025199966 -1.4139265405502006 -0.24788666479179633 NAADKER ddPTM_BT-474_Trastuzumab_2h_R1 2 NAADKER 7 1 Q9H4A6;D6REM1 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 0 ; 112.94 0.005692 97849000.0 266840.0 235120.0 233290.0 178869.0 159504.0 142396.0 255860.0 208395.0 432940.0 277740.0 False True 265403.3630887111 242945.82706695847 266135.20420696953 201513.7970601484 179815.88894572287 132552.49968412874 243483.07431988284 223946.49310836804 326247.73809877987 260014.3954148226 1.0207256512290062 0.934355294749611 1.0235402689238875 0.7750101556441008 0.6915612832083686 0.5097890809955222 0.9364215159373543 0.8612849790531312 1.2547295221031503 1.0 17.98823197314693 1.3238848364508127 6.829652572608592 1.1250338237615343 0.838493335105628 0.3364731282129042 0.15899882365317652 0.2385593840529769 15.242054350121219 0.11639234822377115 0.04189253542005704 21.080690709728174 -1.3238848364508127 -0.2865404886559063 NAAEELKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 NAAEELKPR 9 1 P78406 P78406 RAE1 mRNA export factor 0 ;;; 114.5 0.0014854 5481790000.0 5440900.0 5076540.0 4671590.0 4591970.0 4513290.0 5854000.0 6090850.0 5401600.0 7686700.0 5902430.0 False True 5411606.798940816 5245509.565066764 5329309.265811808 5173312.931174711 5088030.729134327 5449326.758833746 5796212.316193452 5804694.820769024 5792415.781502956 5525731.864075437 0.9793466154453522 0.9492877494055605 0.9644531071909885 0.9362222160666328 0.920788567793753 0.9861728532760655 1.0489492539217284 1.0504843455230275 1.0482621893330215 1.0 22.39773412645211 2.4029633807359407 3.8088209008929574 1.0421780848329611 0.9500608421222029 0.8003765368339366 0.020338966396518856 0.08884581845662096 2.564053467520078 0.0072977546530491695 0.006055893415988801 252.90847376313764 -2.4029633807359407 -0.09211724271075827 NAATEDLWESLENASGKPIAAVMNTWTK ddPTM_BT-474_Trastuzumab_2h_R1 2 NAATEDLWESLENASGKPIAAVMNTWTK 28 1 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ; 244.74 1.5973e-45 185837000.0 215940.0 175414.0 167954.0 155205.0 157947.0 235660.0 198409.0 181503.0 287270.0 231900.0 False True 214777.40303318956 181252.54894999796 191600.46331766184 174853.937086473 178060.61422478495 219369.3788839698 188811.19867401576 195047.6755135592 216476.15772078471 217099.94346042126 0.9893019759000762 0.8348806824219256 0.8825449710565764 0.8054075662085559 0.820178077371294 1.0104534132408112 0.8696971342529957 0.8984234284202735 0.9971267346748515 1.0 17.72799982466725 2.7536140253332366 24.988488871289974 0.9376503603250681 0.8622096151259069 0.3045799433983658 0.0641775571670497 1166.0781641291883 1935674.6695273458 0.019587448135489058 0.020700223811802605 567.0404301652001 -2.7536140253332366 -0.07544074519916122 NACDHLSGFNVCNR ddPTM_BT-474_Trastuzumab_2h_R1 4 NACDHLSGFNVCNR 14 0 Q9Y3B4 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 0 ;;; 189.09 7.579300000000002e-07 1663470000.0 696320.0 1219600.0 1288450.0 1528180.0 1455200.0 1433770.0 1415110.0 1409950.0 1279710.0 1398350.0 False True 692571.0904884244 1260193.6487362315 1469852.5605918383 1721647.4313121748 1640511.09435385 1334656.854631543 1346655.7230548311 1515167.6285810308 964342.6177354602 1309106.105812333 0.529041219358355 0.962636751246569 1.1227910053018644 1.3151320765125065 1.2531536497080746 1.0195177065524075 1.028683402419239 1.1574062804029406 0.7366420593822389 1.0 20.320150604823855 4.7107216843216815 2.695649110453219 1.0965151344110924 0.4376016869072019 0.5422698368968849 0.15059236090995934 0.3084792957291135 3.1284353302430317 0.03755730219475804 0.4410715631130536 51371.43345369835 -4.7107216843216815 -0.6589134475038905 NADDDRGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NADDDRGPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 78.655 0.026591000000000004 89377000.0 216010.0 319660.0 280720.0 310160.0 301030.0 302580.0 279080.0 262240.0 267630.0 268140.0 False True 214847.02616096733 330299.6898614492 320242.93593801855 349426.22419857874 339364.38615540066 281663.3567967054 265579.83421086863 281809.6804277378 201676.17255826786 251027.07563379666 0.8558719238493241 1.315793083385543 1.2757306562627346 1.3919861963748035 1.351903515979576 1.1220437320777363 1.0579728642431458 1.1226266318731588 0.8034040632831062 1.0 17.937483455250053 1.8672227637403311 1.2084787105888222 0.9367263098397063 1.2446498199864786 0.35256068566329735 0.1563667865300929 0.5071228508684494 1.3705642414676495 0.12408074155396254 0.05252174295164395 73.65848188825265 -1.8672227637403311 0.30792351014677233 NADGFIDLEEYIGDMYSHDGNTDEPEWVK ddPTM_BT-474_Trastuzumab_2h_R1 5 NADGFIDLEEYIGDMYSHDGNTDEPEWVK 29 0 O43852;O43852-3;O43852-15;H0Y875;O43852-2;O43852-4 O43852;O43852-2 CALU Calumenin 0 ;;;; 390.75 8.088599999999997e-155 1072261000.0 548760.6 538011.4 505465.3 459527.6 486037.7 581434.2 630250.4 579506.4 688883.6 542400.7 False True 545806.1339026348 555918.7842142414 576630.4206568517 517703.74704357405 547931.720123851 541241.0223028851 599762.7803616665 622752.110241873 519117.4673473104 507784.22295339784 1.07487808645982 1.0947933375733518 1.1355816005921324 1.0195349198375676 1.0790640893428027 1.0658878276187753 1.1811370918011173 1.2264109085937993 1.022319016388488 1.0 18.953856045041583 2.256887761935385 24.99103117864629 1.139014070962867 1.0790087881165498 0.0 0.07037841440233487 475.1127703415322 647866.5579731669 0.024327943028298816 0.020317167484666884 180.67071444417516 -2.256887761935385 -0.06000528284631734 NADGTICYDSTHYK ddPTM_BT-474_Trastuzumab_2h_R1 5 NADGTICYDSTHYK 14 0 P14550;Q5T621 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] 0 ;;;; 232.28 2.2635999999999998e-13 5042390000.0 2414680.0 2418310.0 2321970.0 2210040.0 2263470.0 2771390.0 2655230.0 2568640.0 3472050.0 2728730.0 False True 2401679.631176166 2498801.9864507355 2648883.193074956 2489830.837399493 2551709.4878622205 2579810.3324503354 2526786.380936383 2760324.9600896304 2616409.8005863805 2554580.1152167134 0.9401465300971481 0.9781654415793313 1.0369152947275027 0.9746536515212295 0.9988762821187742 1.009876463487418 0.9891200381171162 1.080539593824977 1.0242034630275911 1.0 21.284654750711983 1.7676168584021104 24.999999999999723 1.0429587139734622 0.9916056744466667 0.3077329704750995 0.030284338700838628 22.695072091164917 19537.93375461028 0.0136852229650479 0.007590405065195774 58.562129199998566 -1.7676168584021104 -0.051353039526795485 NADGYKLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 NADGYKLDK 9 1 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ; 89.266 0.011148 703300000.0 1158040.0 1140050.0 976920.0 1101560.0 1163220.0 1614560.0 1549150.0 1443960.0 2677090.0 1556880.0 False True 1151805.2413103404 1177995.8750752232 1114461.844459139 1241017.3830545084 1311349.1720548943 1502949.2674654282 1474211.6961723072 1551715.62748031 2017357.040668134 1457518.5854879715 0.7902508089972111 0.8082201399036258 0.7646295941303702 0.8514590451270442 0.899713516597018 1.0311698817632893 1.0114531031374443 1.064628364214513 1.3841038191583201 1.0 20.475082849333393 2.5941154572071685 0.8457328862718371 1.1563742638886725 0.7824942304217488 0.6938543727269961 0.09671873703179489 0.33754550484238816 0.5011658129577834 0.06377047618557032 0.05166035627358707 392.7493339495581 -2.5941154572071685 -0.37388003346692367 NADHSMNYQYR ddPTM_BT-474_Trastuzumab_2h_R1 6 NADHSMNYQYR 11 0 Q12906;K7ELV3;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;;; 197.31 5.7491e-08 3325373000.0 660524.0 693702.0 684171.0 640712.0 589436.0 758630.0 692069.0 620679.0 1021402.0 736337.0 False True 656967.8121751158 716791.4517182865 780496.3298790618 721826.0735063186 664497.1807391118 706187.6937229314 658590.9785096811 666997.2187240996 769691.1631855922 689343.3422501782 0.9530342456498077 1.0398177624788705 1.1322316210835357 1.0471212663781 0.9639567687272316 1.0244353581740113 0.9553889015013706 0.9675834636291174 1.1165570420585187 1.0 19.394863201610605 3.3172067722240683 10.197072596390548 0.9982174727924996 1.0493649702468892 0.08239881016892991 0.05906112839486184 0.7791418205545961 95.32606446274268 0.016554691979602833 0.022413162723906473 2075.9016410686963 -3.3172067722240683 0.05114749745438962 NADMSEDMQQDAVDCAT(ph)QAMEKYNIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NADMSEDMQQDAVDCATQAMEKYNIEK 27 1 Q96FJ2 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic 1 NADMSEDMQQDAVDCAT(0.569)QAMEKY(0.431)NIEK 48.449 0.091213 5970800000.0 223840.0 237480.0 193470.0 215800.0 235390.0 193710.0 153860.0 101700.0 170690.0 174750.0 True False 222634.87031096168 245384.37824030855 220708.89432861414 243120.2578735275 265365.52123416157 180319.28364429163 146417.20399772204 109289.37042213595 128625.73662881875 163597.3053889979 1.360871255071015 1.499929217396578 1.3490985918369354 1.4860896229032732 1.622065354946902 1.1022142645658657 0.8949854256436229 0.6680389396528886 0.7862338338823823 1.0 17.319789460284046 2.432128821761212 2.670502313625886 0.7907582356846263 1.4591685256186313 0.8734051457068274 0.11192342416128781 0.08305315546425043 1.2104385456121969 0.04220602804306415 0.03477773893370705 270.4760539497881 -2.432128821761212 0.668410289934005 NADNDWFR ddPTM_BT-474_Trastuzumab_2h_R1 3 NADNDWFR 8 0 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 ;; 116.05 0.0054576 1593860000.0 2981370.0 3103140.0 3006030.0 3144450.0 2726100.0 3355180.0 3284190.0 3016460.0 4200600.0 3205640.0 False True 2965318.635181344 3206426.139012254 3429252.895118845 3542537.047592282 3073252.6761393803 3123244.303844173 3125321.182875855 3241563.5624735127 3165418.4151562243 3001053.310713517 0.9880926222121403 1.0684335821578286 1.1426830982564322 1.1804312289107668 1.0240580082893287 1.0407160354980847 1.0414080855274086 1.0801419457966286 1.0547691385074491 1.0 21.517037516523917 NADSELMPPPPERGDPPRLS(ph)PDPVAGSAVSQELR ddPTM_BT-474_Trastuzumab_2h_R1 1 NADSELMPPPPERGDPPRLSPDPVAGSAVSQELR 34 2 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 NADSELMPPPPERGDPPRLS(0.999)PDPVAGSAVS(0.001)QELR 93.339 0.00017551 234780000.0 100670.0 142430.0 141290.0 185700.0 158930.0 172710.0 168220.0 153890.0 244550.0 180820.0 True False 100128.00390548853 147170.6964492467 161182.4038853045 209209.60095974998 179168.79344808747 160770.9642156091 160082.5559371949 165374.0532375863 184283.92930211243 169279.91279220965 0.5914937115332474 0.8693925582883427 0.9521649747253543 1.23587965936959 1.0584173307556957 0.9497344461238868 0.9456677599645006 0.9769266211791013 1.0886343586927538 1.0 17.369051263769588 4.650104101237052 1.8981353805377303 1.025445682006791 0.5065218946348545 0.7262697919729857 0.08241582769908462 0.3659650333115673 1.5977015008049706 0.023101179400183424 0.3144711801826263 44679.067591556355 -4.650104101237052 -0.5189237873719365 NADSGVHLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 NADSGVHLNR 10 0 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;G3V3Y4;A0A3B3IT62;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 0 ;;; 150.1 2.2166e-05 928480000.0 1509870.0 1769570.0 1783690.0 1820520.0 1761050.0 2040280.0 1968010.0 1708750.0 2270730.0 1817720.0 False True 1501741.0276823274 1828469.067722348 2034818.0478885896 2050997.645337877 1985309.2789388725 1899240.2459025125 1872809.8377717214 1836265.601856684 1711139.0177231082 1701711.553371615 0.8824885890366765 1.0744882492568069 1.1957479185335422 1.2052557563437931 1.1666544045054892 1.1160764831968921 1.1005448215128515 1.0790698330856814 1.0055399896256298 1.0 20.69855508473404 -0.8401832693433159 7.416962434421079 1.0000385684238358 1.0995642433919155 0.07878471580553648 0.09066858795754398 1.3395007800020462e-09 0.0 0.08989237567305124 0.021187836138461064 0.14448299335905743 0.8401832693433159 0.09952567496807974 NAEAVLQS(ph)PGLSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 NAEAVLQSPGLSGK 14 0 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 1 NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK 315.05 7.804700000000001e-56 1131730000.0 1474190.0 1140700.0 1012460.0 1035670.0 1081530.0 1491680.0 1401020.0 1309790.0 1964290.0 1488240.0 True False 1466253.1248379063 1178667.5099322884 1155005.5675399206 1166785.715810361 1219256.4347694584 1388563.6726370207 1333247.3101838594 1407533.180778855 1480217.0496374848 1393259.2490536338 1.0523907347709003 0.8459786007039924 0.8289954423948406 0.83745054382585 0.8751109569863855 0.9966297898831086 0.9569269402585792 1.010244993338402 1.062413223269766 1.0 20.410032300001646 2.726907859488876 6.944600897286365 1.0024868730136682 0.8794301325219214 0.4524202323386235 0.06412571240254637 0.140184112154961 39.226871743383924 0.020682554745644382 0.02026338492648258 533.2217544294305 -2.726907859488876 -0.12305674049174686 NAEEES(ph)ES(ph)EAEEGD ddPTM_BT-474_Trastuzumab_2h_R1 1 NAEEESESEAEEGD 14 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;H0Y503 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 2 NAEEES(1)ES(1)EAEEGD 157.58 3.5856e-07 0.0 181250.0 252320.0 213550.0 284360.0 258660.0 252470.0 259400.0 188750.0 197520.0 207710.0 True False 180274.17013876824 260718.31866933932 243615.98379012535 320359.94684391265 291598.81780206604 235017.34315045382 246851.8309957694 202835.4834530793 148843.84263239958 194453.76997052215 0.9270798409621812 1.3407727641838079 1.252822117190404 1.6474864277122372 1.4995791433936736 1.2086026575163897 1.2694628190196078 1.043103887797227 0.765445908582607 1.0 17.56906767971576 1.6491675214488255 2.215791070290031 0.8798030907142486 1.330940608450205 0.4670055703289385 0.18544630351818392 0.23846759971653653 2.558174448101897 0.1366434572995169 0.05329985881336367 44.5828185606426 -1.6491675214488255 0.45113751773595634 NAEEES(ph)ESEAEEGD ddPTM_BT-474_Trastuzumab_2h_R1 2 NAEEESESEAEEGD 14 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;H0Y503 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 NAEEES(0.817)ES(0.183)EAEEGD;NAEEES(0.998)ES(0.002)EAEEGD 225.09 3.0483e-12 311970000.0 636190.0 663800.0 554130.0 603370.0 571690.0 638560.0 679490.0 628560.0 729690.0 726370.0 True False 632764.8237273544 685894.1817244261 632146.6874156973 679756.580135081 644491.332827894 594417.8502085544 646620.4727961273 675466.338963008 549867.6768450569 680012.4447233566 0.9305194759851438 1.0086494549426406 0.9296104686332143 0.9996237354326952 0.9477640267158444 0.8741278998950911 0.9508950576032269 0.9933146727010297 0.8086141380379511 1.0 19.37520162341212 3.0030395883445995 24.933910653202208 0.9306188248910302 0.968178571979317 0.10240527612818606 0.05724020213575439 235.7802251784532 1934076.0280062493 0.01612779561790362 0.019183457277027777 1007.0234604274895 -3.0030395883445995 0.0375597470882868 NAEFSFHEALTHLLHSHLLPEVFTLATLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NAEFSFHEALTHLLHSHLLPEVFTLATLR 29 0 O15296-4;O15296;I3L1D5;O15296-3;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 23.467 0.09803 100200000.0 52755.0 55125.0 55133.0 48077.0 49429.0 60314.0 62399.0 55272.0 74735.0 62907.0 False True 52470.972941631524 56959.80230123384 62895.24717537334 54163.543270554146 55723.49016136361 56144.635143884225 59380.52198267163 59396.67730552902 56317.560647693244 58892.22140260771 0.8909661020072872 0.9671871928864224 1.0679720628196303 0.9197062359097192 0.9461944011318311 0.9533455150224334 1.0082914274319137 1.0085657475793395 0.9562818196767755 1.0 15.845789472264414 2.2433209532324074 24.900198168808593 0.9960697914916083 0.9607806531198775 0.12780945214021 0.045015896609217496 252.73236534691395 1321987.4587505476 0.016348019239917015 0.01326300361976156 175.1140342009376 -2.2433209532324074 -0.035289138371730866 NAEMHK ddPTM_BT-474_Trastuzumab_2h_R1 3 NAEMHK 6 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;; 81.635 0.06136000000000001 352494000.0 1072220.0 822700.0 848610.0 726520.0 754620.0 639090.0 930280.0 962300.0 1498110.0 1138240.0 False True 1066447.2866548402 850083.0721673479 968086.9117496515 818497.3575082266 850716.3840168366 594911.21255604 885278.802385291 1034111.7124603894 1128920.864145523 1065596.5487037087 1.000798367780157 0.797753214574004 0.9084929121883165 0.7681118698290862 0.7983475406820035 0.5582893575244268 0.8307823476551486 0.9704533237446945 1.0594261641695892 1.0 20.023229884195736 1.6746878819600584 3.469073455418722 1.0238981559793352 0.799802643434742 0.432016273216854 0.10681965996897522 0.1865890145857285 5.250569385801991 0.06496780611291135 0.02944389791857056 47.28113375589772 -1.6746878819600584 -0.22409551254459315 NAEQYKDQADK ddPTM_BT-474_Trastuzumab_2h_R1 2 NAEQYKDQADK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 180.09 6.2178999999999985e-06 3719300000.0 3827300.0 2386100.0 2111660.0 2024210.0 2038600.0 3407300.0 3507500.0 3031100.0 5361200.0 3042000.0 False True 3806694.2420530035 2465519.8960720906 2408963.3731222437 2280474.7784530725 2298203.626271133 3171761.3709214553 3337828.8250488094 3257296.073613932 4040004.0963994525 2847856.9556127694 1.3366873060637705 0.8657456938674043 0.8458863667202381 0.8007687232880649 0.8069940527531277 1.1137361954470049 1.172049325887091 1.1437709563305871 1.4186120157605215 1.0 21.441445252633105 2.562861290373823 4.777304461014927 1.18492733396059 0.9164261762553183 0.3244851225448666 0.17339771807915777 0.25329437161898005 9.990526014213753 0.05739308307666451 0.05327101620912303 365.47804267557694 -2.562861290373823 -0.2685011577052716 NAET(ph)PEATTQQETDTDLPEAPPPPLEPAVIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NAETPEATTQQETDTDLPEAPPPPLEPAVIAR 32 0 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 NAET(0.759)PEAT(0.206)T(0.035)QQETDTDLPEAPPPPLEPAVIAR;NAET(0.936)PEAT(0.028)T(0.028)QQET(0.004)DT(0.004)DLPEAPPPPLEPAVIAR 109.09 1.5571e-05 170990000.0 14577.1 15184.3 7885.4 11825.1 14169.900000000001 14633.599999999999 8736.9 8677.2 18533.1 13946.5 True False 14498.618513268071 15689.700246396824 8995.59577887451 13322.15644754518 15974.352773422612 13622.013675789109 8314.262768800843 9324.736725928802 13965.865835816745 13056.42242980063 1.1104587486519815 1.201684483690254 0.6889786101238969 1.0203527435768336 1.2234862083630162 1.043319006338026 0.6367948657837507 0.7141877322110503 1.0696548699236597 1.0 13.67247201993714 2.2769640856528657 22.44658815958918 0.8118415822133486 1.0454253064300532 0.19849293621175468 0.18168329807859693 74.58450720835826 43593.4051046496 0.06481105871209278 0.05422240580212624 189.2187136169541 -2.2769640856528657 0.2335837242167046 NAFACFDEEATGTIQEDYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NAFACFDEEATGTIQEDYLR 20 0 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 68.809 0.047975 50448000.0 23274.0 20039.0 21745.0 18673.0 17903.0 27187.0 22451.0 20434.0 29464.0 22772.0 False True 23148.6953699845 20705.986001168705 24806.506989071753 21036.99988541419 20182.84093060538 25307.626681314152 21364.95935885129 21958.888841749544 22202.99199737251 21318.671463909945 1.085841367234003 0.9712606170708881 1.1636047317050837 0.9867875641794756 0.9467213266442333 1.1871108724648742 1.0021712373127802 1.0300308290281321 1.041481033888984 1.0 14.37982991463767 0.8427059106367064 0.8457480467932409 1.00108146993356 1.0478328539314823 0.034711247214662344 0.07507467106914024 3.466049526696551 5.077356287964833 0.06900615603958705 0.02410601411584212 6.961549421554524 -0.8427059106367064 0.046751383997922336 NAFMMLIHADQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NAFMMLIHADQDR 13 0 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 ; 139.3 3.9129e-05 1485010000.0 1323340.0 1291200.0 1160950.0 1218830.0 905100.0 1273680.0 1167690.0 906890.0 1954460.0 1297300.0 False True 1316215.284476896 1334176.811453117 1324401.6688417047 1373133.7530305432 1020359.1200519977 1185633.4995202178 1111204.373691017 974566.7368941086 1472809.5214222337 1214505.2033255913 1.0837461057167967 1.0985352782349864 1.090486615631775 1.130611667426859 0.8401438851460022 0.9762275997448868 0.9149441028727476 0.8024393260938886 1.2126827595216114 1.0 20.21193724027444 3.2532145264594368 24.998848920161645 0.9360934074819612 1.0999400988620571 0.2944853694890255 0.10536027026894934 258.8602561796409 441600.2335533644 0.028582991547608412 0.03853671441903506 1791.4905699130989 -3.2532145264594368 0.1638466913800959 NAGFTPQER ddPTM_BT-474_Trastuzumab_2h_R1 3 NAGFTPQER 9 0 P27695;G3V3M6;G3V5Q1 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;; 113.66 0.0041053 627740000.0 535980.0 486340.0 449558.0 432054.0 412910.0 519700.0 564830.0 482698.0 739750.0 484669.0 False True 533094.3432329764 502527.53290126164 512851.85877181444 486751.9921005055 465491.64099068684 483774.3622422096 537507.0150398638 518719.3758507789 557448.52464215 453737.0094739928 1.1748972027893003 1.1075304028733088 1.1302843895549808 1.0727623754226843 1.0259062656809081 1.0661999178842352 1.184622377757952 1.1432159268914799 1.228571866527678 1.0 18.791496813664804 2.2418233603748337 24.99322038628776 1.151398679521633 1.0940556868991682 0.07900875351128223 0.06629567883125209 162.3103145258061 1243340.0480019571 0.022916809536340885 0.0184506885651565 174.51122229572766 -2.2418233603748337 -0.057342992622464894 NAGSAVTMSDEHANKPAES(ph)PTSVLEKPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NAGSAVTMSDEHANKPAESPTSVLEKPDR 29 2 Q9C0G0;Q9C0G0-2;Q9C0G0-3 Q9C0G0 ZNF407 Zinc finger protein 407 1 NAGSAVTMSDEHANKPAES(0.953)PT(0.024)S(0.024)VLEKPDR 159.2 3.8352e-12 162670000.0 197200.0 151250.0 155700.0 135750.0 153440.0 236560.0 240360.0 206900.0 332530.0 209090.0 True False 196138.29711097956 156284.26481744417 177621.20663133916 152935.93608123876 172979.67448986694 220207.1640023423 228732.86853563302 222339.9286169122 250582.43717371306 195745.69718904482 1.0020056631005052 0.7984045987305147 0.9074079746427243 0.7812990950883493 0.8836959226889611 1.1249655403136314 1.168520543849964 1.1358611290555396 1.280142760592631 1.0 17.57862106950228 2.727165837521834 4.293017947133819 1.154136242968745 0.8648599159160607 0.7118833274834527 0.08501434688525072 0.10115983033210271 4.694729448622477 0.0257559890709221 0.0254718507370163 533.5385909757379 -2.727165837521834 -0.28927632705268425 NAGSS(ph)SDGTEDSDFSTDLEHTDSSESDGTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NAGSSSDGTEDSDFSTDLEHTDSSESDGTSR 31 0 O95251-4;O95251;O95251-2;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7 1 NAGS(0.102)S(0.722)S(0.174)DGT(0.002)EDSDFSTDLEHTDSSESDGTSR 275.81 7.049699999999997e-72 604400000.0 83044.0 97500.0 100910.0 113860.0 83335.0 101040.0 128770.0 79805.0 148330.0 92248.0 True False 82596.9003310558 100745.22856000547 115117.25087455656 128274.66432567134 93947.21828475675 94055.34262257617 122540.90315082965 85760.45434157873 111776.0590201692 86360.6536625137 0.9564181931025424 1.166563988198895 1.332982625680671 1.4853368853245623 1.087847466415555 1.0890994756724783 1.4189436734662026 0.993050083626272 1.2942938048729418 1.0 16.398086542688677 1.7070440543139063 24.999999981026882 1.106041169930758 1.2220649262550107 0.0991765853665445 0.1700498747376464 1.9508676517764465 1538.268022927828 0.0791016523474419 0.04386583499706723 50.938253959341324 -1.7070440543139063 0.11602375632425277 NAGSSS(ph)DGTEDSDFSTDLEHTDSSESDGTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NAGSSSDGTEDSDFSTDLEHTDSSESDGTSR 31 0 O95251-4;O95251;O95251-2;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7 1 NAGS(0.08)S(0.337)S(0.582)DGT(0.001)EDSDFSTDLEHTDSSESDGTSR 294.6 1.7066999999999992e-81 616570000.0 102800.0 91802.0 95667.0 98280.0 88074.0 114550.0 115520.0 87736.0 119220.0 107560.0 True False 102246.53622215369 94857.57407451916 109136.0820475295 110722.23792312465 99289.70184450295 106631.42812169551 109931.8562707451 94283.30583438087 89839.82846615354 100695.42871325099 1.0154039515867177 0.9420246309754913 1.0838235999601813 1.099575614682836 0.9860398144512488 1.0589500385896204 1.0917263839632338 0.9363216090262663 0.8921937134007265 1.0 16.619638665006757 1.645603343481916 7.097919252810981 0.9346493245070434 1.0383221767208426 0.4115756877717275 0.05268735795330607 0.11742766323382764 11.823286409031516 0.027327453575738403 0.013791303765530605 44.21843252842363 -1.645603343481916 0.10367285221379918 NAIEHPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NAIEHPVR 8 0 Q99805 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 0 ; 86.13600000000002 0.016248 278830000.0 360360.0 439910.0 466190.0 376100.0 356120.0 400820.0 380670.0 325530.0 539310.0 376650.0 False True 358419.86179975944 454552.13841878966 531825.4998038798 423714.2214375982 401469.77111138817 373112.25682879053 362255.537799382 349822.70160784636 406404.2768837552 352611.8745337119 1.0164713320381735 1.2891004848316068 1.5082461431769905 1.2016447886161261 1.138559986507219 1.0581386611616186 1.0273492300235854 0.9920899631370785 1.1525541430536834 1.0 18.427721534013905 3.109852398944409 2.2474097271021574 1.0405152715433457 1.2792568770793662 0.40396846191481406 0.11907783831247644 0.28621483656740765 2.9486891723405475 0.03896349490774748 0.048821811980013216 1287.8117964528108 -3.109852398944409 0.23874160553602053 NAINTEMYHEIMR ddPTM_BT-474_Trastuzumab_2h_R1 5 NAINTEMYHEIMR 13 0 A0A0C4DGA2;O75521-2;O75521;F1LLU7 A0A0C4DGA2 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial 0 ;;;; 280.23 2.1718999999999997e-32 2482330000.0 1405439.0 1675235.0 1570304.0 1516912.0 1599049.0 1878567.0 1586583.0 1543393.0 2185730.0 1590162.0 False True 1397872.2725829522 1730994.1842740579 1791389.1538729533 1708952.9036675096 1802678.411844028 1748706.084961057 1509833.9189543612 1658568.8228508525 1647086.1287814612 1488676.499753819 0.9390033850968407 1.1627739032357336 1.2033434760132193 1.1479679459910312 1.210926895226824 1.1746716531430694 1.014212234292703 1.1141230637583976 1.1064097062416436 1.0 20.50559884916279 2.252836658658068 24.993424382056833 1.0711891885327607 1.147321548070938 0.1904907114553388 0.07935103392720894 412.1273932085212 721521.0275452106 0.027563925756393513 0.02296501325979513 178.99325206630797 -2.252836658658068 0.07613235953817732 NAKPLSFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NAKPLSFK 8 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ; 86.275 0.014728 1335070000.0 1116350.0 922870.0 800230.0 777230.0 669800.0 1047950.0 837590.0 802320.0 1693380.0 1146240.0 False True 1110339.6956381453 953587.170063305 912895.4282761505 875627.2383088121 755095.0597843644 975507.6831089543 797072.5717954758 862193.1924984083 1276069.189129468 1073085.9818545638 1.034716429450693 0.8886400402093272 0.8507197407410322 0.8159898210537677 0.7036668753042225 0.9090675860130336 0.7427853734683337 0.8034707442625618 1.189158381254872 1.0 20.033334247119846 1.247127507698865 24.984965517298107 1.0945792083195678 0.8354574176610811 0.5175335593217828 0.09666097405701089 121.41317316944365 354103.48405710125 0.06628029509089899 0.023359644487263784 17.665564007922196 -1.247127507698865 -0.25912179065848673 NALLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 NALLHK 6 0 A0A1B0GVP4;A8MVM7 A0A1B0GVP4 Putative uncharacterized protein ENSP00000382790 0 76.592 0.07465 1168900000.0 2002100.0 1717700.0 1710600.0 1661600.0 1709100.0 2137600.0 1825600.0 1890300.0 3043100.0 1927200.0 False True 1991320.9160542213 1774872.6061284237 1951437.6111982607 1871958.3896323158 1926743.7543706428 1989832.7433691514 1737288.7535307533 2031363.7847489088 2293168.780450866 1804204.4460410716 1.1037113451436924 0.9837425076869697 1.081605588258171 1.0375533625027449 1.067918748675327 1.1028865091954518 0.9629112473050657 1.1259055420278385 1.2710138174654868 1.0 20.78293139825972 1.5520019847287776 7.421243749108294 1.1553700014567219 1.049377543301438 0.197198979397876 0.0752906935938373 0.14765198809824318 14.929382863294185 0.0373474754115406 0.017357906305051633 35.645276241410464 -1.5520019847287776 -0.1059924581552838 NALPPVLTTVNGQS(ph)PPEHSAPAK ddPTM_BT-474_Trastuzumab_2h_R1 6 NALPPVLTTVNGQSPPEHSAPAK 23 0 Q6PKG0;A0A0B4J210;H0YBM7 Q6PKG0 LARP1 La-related protein 1 1 NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK 258.09 7.9813e-44 11093680000.0 4203840.0 3197990.0 2800460.0 2664600.0 2605810.0 3969410.0 3192150.0 3225960.0 5228470.0 3913590.0 True False 4181206.992530531 3304433.1639242186 3194740.425965317 3001938.086792408 2937644.457654069 3695014.029686067 3037733.509302795 3466697.5162929595 3939983.62640857 3663821.3356070337 1.1412147617284878 0.9019089254734987 0.8719694912295722 0.8193461994497167 0.8017979558949621 1.008513705015003 0.829116168897328 0.9461972074352217 1.075375479725946 1.0 21.804917722180882 1.4066580821952532 5.318829363024999 1.034506946644016 0.9037706894813388 0.2076724161401684 0.0971731836426473 0.30119300626411966 13.654964588975085 0.06611941284728795 0.02418391373042813 25.50692365013879 -1.4066580821952532 -0.13073625716267723 NALQQENHIIDGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NALQQENHIIDGVK 14 0 Q9GZT3-2;Q9GZT3;H0YJW7;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9 Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial 0 80.507 0.016102 178170000.0 168940.0 144090.0 148510.0 133260.0 165010.0 285610.0 150020.0 147700.0 233730.0 199800.0 False True 168030.4458109985 148885.94854575553 169418.91712793932 150130.70233654435 186023.0454091042 265866.4529536226 142762.95946794655 158722.12400540317 176130.37332154068 187048.59294261393 0.8983250992032313 0.7959747047732852 0.905748150588423 0.8026294128959531 0.9945172133220784 1.421376385521327 0.7632399539714575 0.8485609087372218 0.9416289668405956 1.0 17.513053587813666 3.228746382972363 24.371783372857145 0.9816186106185573 0.8506967813538556 0.15252363905818456 0.16476893485834637 341.82794126549095 848863.3912365008 0.0512359633354528 0.06198758592623455 1693.3486387417827 -3.228746382972363 -0.13092182926470164 NAMS(ph)LPQLNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NAMSLPQLNEK 11 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 NAMS(1)LPQLNEK;NAMS(1)LPQLNEK 154.47 3.3554e-05 180839000.0 1040000.0 270663.0 199833.0 311640.0 174158.0 301880.0 214244.0 309630.0 705440.0 447370.0 True False 1034400.7555548623 279671.85433576175 227967.74942042673 351093.5920468313 196335.98898466027 281011.7461490828 203880.19922844137 332736.1628692824 531593.764411705 418818.46358727344 2.4698069581149538 0.6677639088313109 0.544311603332461 0.8382954014004934 0.4687854191121346 0.6709631274183917 0.4867984985240671 0.7944639307907371 1.269270126867106 1.0 18.675965519233316 4.739589830282173 24.917973868058155 0.7194314197451365 2.4698075385239266 0.8276334947971165 0.23525030475691505 30.652992474573267 742025.5815309916 0.05467208422903617 0.33444715007690834 54902.21046213347 -4.739589830282173 1.75037611877879 NAPAAVDEGSIS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 NAPAAVDEGSISPR 14 0 R4GMW8;A0A1W2PS85;P28715;A0A494C0S2;A0A090HNM7 R4GMW8 BIVM-ERCC5;ERCC5;ERCC5-201 DNA repair protein complementing XP-G cells 1 NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGS(0.001)IS(0.999)PR 405.46 1.869799999999999e-132 5716710000.0 2472940.0 2397440.0 2322410.0 2251760.0 2355500.0 2820100.0 2658450.0 2486530.0 3127660.0 2593880.0 True False 2459625.9658094645 2477237.3411169136 2649385.1412504087 2536832.585121844 2655458.962857677 2625153.1248013387 2529850.6172347856 2672087.4949435033 2356890.101496815 2428336.357667608 1.012885203502825 1.0201376482689055 1.0910288983998557 1.0446792418651778 1.0935301258711203 1.0810500433814576 1.0418040356092517 1.100377831310822 0.970578105481476 1.0 21.211536837676338 4.367608991196302 8.196147325925192 1.0600227179798192 1.0147809166004504 0.09569693503688625 0.040412390063092045 0.3804290853070641 25.591796408687685 0.0091094539304469 0.025122226167569754 23313.581230129723 -4.367608991196302 -0.04524180137936873 NAPLPSLQNGPNTPNKPSS(ph)PPPPQQFVVQHSLFGSPVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVAK 39 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 NAPLPSLQNGPNTPNKPS(0.18)S(0.82)PPPPQQFVVQHSLFGSPVAK 157.02 1.5737999999999998e-14 1516400000.0 143840.0 113740.0 105980.0 114710.0 95028.0 161960.0 172960.0 160880.0 216330.0 154370.0 True False 143065.5814221265 117525.76714271805 120901.06280532644 129232.27423851863 107129.25252491582 150764.08641283095 164593.26402863656 172885.6825320869 163018.37017348595 144517.97443719392 0.9899500873803168 0.8132259506155312 0.8365814928984411 0.8942297644413892 0.7412867011326203 1.0432203122134924 1.1389120603829608 1.1962919021344387 1.1280144965243208 1.0 17.140889413659036 2.5355013656007004 4.519854273101051 1.135619312975578 0.8545584276453612 0.7278017158256547 0.07580826361316012 0.10002654557517505 4.180489099724429 0.02467225052134605 0.022583711279775532 343.1637188428242 -2.5355013656007004 -0.2810608853302169 NAPWTLTPEFLAEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 NAPWTLTPEFLAEHR 15 0 P49585;C9JEJ2;C9J050;H7C1T3;C9J2E1;H7BZN1 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 0 ;; 146.78 3.8248e-06 568070000.0 546260.0 633460.0 571790.0 619030.0 617470.0 621290.0 637040.0 553400.0 781590.0 615820.0 False True 543318.9968551921 654544.3331653436 652293.0619122249 697399.1345294242 696101.1444685756 578341.6846593476 606223.9414708754 594697.5181082608 588977.6172694264 576517.8403699733 0.942414889548819 1.1353409857105163 1.1314360393316254 1.2096748542627525 1.2074234233963361 1.0031635522123719 1.0515267681600946 1.0315335909234324 1.021612127200534 1.0 19.137005727266242 2.7188111415503804 24.71734886689761 1.0266462299348802 1.130851252702767 0.34932884725975144 0.07038107309740556 840.3698350747454 1051758.7913472464 0.02342720133284165 0.022113578308110567 523.3727918126391 -2.7188111415503804 0.10420502276788679 NAQAIEDMVGYAQETQHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NAQAIEDMVGYAQETQHEK 19 0 A0A087WW66;Q99460-2;Q99460;H7C378 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;; 338.73 1.3010999999999996e-75 798667000.0 589119.0 519037.0 508328.0 446491.0 454666.0 596535.0 598324.0 529466.0 754431.0 594132.0 False True 585947.2487612736 536312.8327805079 579896.1639338178 503016.71482024604 512565.0200834847 555297.939542345 569380.782300358 568977.4414938708 568511.5889074715 556213.9870980039 1.0534565155730806 0.9642203274654626 1.0425774564918324 0.9043582622664529 0.9215248662798761 0.9983530663073789 1.0236721756514084 1.0229470216354304 1.0221094796152632 1.0 19.085280498990528 2.480660546569672 20.285168389777034 1.018588567440456 0.9744723401299901 0.15528187357699752 0.04370823764506173 22.71366342644207 130199.45510151732 0.015288675801418742 0.013128081827622724 302.4548455167282 -2.480660546569672 -0.04411622731046594 NAS(ph)ASFQELEDK ddPTM_BT-474_Trastuzumab_2h_R1 3 NASASFQELEDK 12 0 Q99543;Q99543-2;H7C3L7;F2Z3H0;F2Z3N9 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 1 NAS(0.986)AS(0.014)FQELEDK;NAS(0.976)AS(0.024)FQELEDK;NAS(0.794)AS(0.206)FQELEDK 241.39 3.1642e-16 2451630000.0 2778150.0 1572650.0 1418610.0 1376320.0 1332440.0 1873840.0 1821620.0 1976380.0 2766620.0 1984970.0 True False 2763192.749081479 1624994.704563001 1618337.9572208356 1550561.9708827324 1502118.3360093737 1744305.8513448962 1733501.28133583 2123867.511454289 2084823.5718086746 1858287.5151816842 1.4869565266445448 0.8744581725310282 0.8708759780171107 0.8344036959916477 0.8083347295493787 0.9386630632205243 0.9328488014764207 1.1429165261580305 1.1219058163907656 1.0 20.825542302818885 1.7545107933431374 11.54079215306752 1.0982070806763393 0.9448493295812564 0.07877708799471261 0.1864251095856982 0.33527716699945176 210.2740942948178 0.08663550072836601 0.047491794842127705 56.821251293762 -1.7545107933431374 -0.15335775109508287 NAS(ph)ASFQELEDKK ddPTM_BT-474_Trastuzumab_2h_R1 4 NASASFQELEDKK 13 1 Q99543;Q99543-2;H7C3L7;F2Z3H0;F2Z3N9 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed 1 NAS(0.5)AS(0.5)FQELEDKK;NAS(0.999)AS(0.001)FQELEDKK;NAS(0.969)AS(0.031)FQELEDKK;NAS(0.635)AS(0.365)FQELEDKK 179.09 8.599299999999999e-06 2467720000.0 2279290.0 1297280.0 1224350.0 1074220.0 1008030.0 1659960.0 1569400.0 1530900.0 2515060.0 1653920.0 True False 2267018.555892928 1340459.1805776784 1396727.837759025 1210216.1418577419 1136396.6454380918 1545210.8723255307 1493482.126309796 1645143.5317526865 1895257.163077373 1548365.4096078465 1.4641366578107 0.8657253463942827 0.9020660298222325 0.7816088723941802 0.7339331131957451 0.9979626661363388 0.9645540497369088 1.0625034126597745 1.224037395382905 1.0 20.562314552704702 1.6841597721656227 2.716545687793033 1.119600403697944 0.9361473424704531 0.0898261698336994 0.1947924886081627 0.4963556708850915 8.228348460764442 0.12420335034260799 0.05337743243648558 48.32365467558584 -1.6841597721656227 -0.18345306122749083 NASS(ph)PEKAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NASSPEKAK 9 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 NAS(0.026)S(0.974)PEKAK;NAS(0.028)S(0.972)PEKAK 147.96 5.5201e-05 764340000.0 1662390.0 1303530.0 1141780.0 1151100.0 1186670.0 1310800.0 1863490.0 1647520.0 3322800.0 1922750.0 True False 1653439.8769488912 1346917.2080494761 1302532.6994703305 1296829.1419750585 1337785.3905558551 1220187.4812912997 1773345.869476895 1770466.3083370458 2503940.463238846 1800038.4488509058 0.9185580885810528 0.7482713543754081 0.7236138207502351 0.720445245379574 0.7431982307988254 0.6778674544814491 0.9851711059888468 0.9835713839708602 1.3910483216829572 1.0 20.77959629219807 1.791200280320683 1.806171548674097 1.1750793188424669 0.7546246832620668 0.658861745437695 0.12038688475291591 0.18520994038114133 1.1755833574478247 0.07928919836779388 0.03350868419237867 61.83014718418289 -1.791200280320683 -0.4204546355804001 NAT(ph)SPQVQRPSFMDYFDKQDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 NATSPQVQRPSFMDYFDKQDFK 22 2 A0A087WZ06;Q13188;Q13188-2 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 NAT(0.5)S(0.5)PQVQRPSFMDYFDKQDFK 146.57 4.0247000000000015e-06 479190000.0 665850.0 556490.0 520240.0 586060.0 508590.0 748380.0 686080.0 578640.0 1051400.0 676100.0 True False 662265.1375828892 575012.433244691 593485.2699928579 660255.1359099142 573355.9218508957 696646.2520970264 652891.6893198831 621821.0550743834 792296.5580381977 632950.7191616687 1.0463139033320743 0.9084631960072408 0.9376484646054561 1.0431382980090609 0.9058460706234679 1.1006326890973777 1.0315047752605857 0.9824162233324795 1.2517507825689487 1.0 19.27173365183328 2.4489327509501306 0.9217113186473775 1.0773289998831301 0.964895860941179 0.22181935243499773 0.08626560167514008 0.9220363665449209 1.566563466910546 0.05738360448329748 0.039660422534056265 281.1465450657232 -2.4489327509501306 -0.11243313894195117 NATS(ph)PQVQRPSFMDYFDKQDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 NATSPQVQRPSFMDYFDKQDFK 22 2 A0A087WZ06;Q13188;Q13188-2 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 NAT(0.411)S(0.589)PQVQRPSFMDYFDKQDFK 122.41 1.3472e-05 415850000.0 767830.0 571320.0 617290.0 547870.0 561340.0 760380.0 736640.0 628360.0 1048600.0 648700.0 True False 763696.0885939329 590336.0408297667 704199.0664191353 617230.2858256233 632823.32167715 707816.7203419891 701005.9089619268 675251.4139474286 790186.5805201203 607299.4106199887 1.2575281240834397 0.9720675345742487 1.1595582905312263 1.0163525190902067 1.0420285457400724 1.1655152433284643 1.154300328146661 1.111892094968556 1.3011482749726748 1.0 19.2120484434996 2.7240702336968887 24.051985646547656 1.150541590273221 1.0828101865530757 0.07146312356023388 0.10091461603077778 1153.423553102876 1914514.2776983455 0.03026066404945635 0.0286617696424321 529.7491074942966 -2.7240702336968887 -0.0677314037201453 NATTGRIVSPGFPGNYSNNLTCHWLLEAPEGQRLHLHFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NATTGRIVSPGFPGNYSNNLTCHWLLEAPEGQRLHLHFEK 40 2 H0YGK0;H0YFX0;H0YF95;A0A0A0MSU7;C9JFF1;Q53EL9-4;Q53EL9-2;Q53EL9-3;Q53EL9 H0YGK0 SEZ6 Seizure protein 6 homolog 0 16.482 0.096468 63194000000.0 13252000.0 4381200.0 1724700.0 1639800.0 1759500.0 4605800.0 5113000.0 4440700.0 16372000.0 2873400.0 False True 13180652.704435628 4527025.59350867 1967522.7686388628 1847398.511867517 1983561.8956264409 4287411.88688699 4865664.656443216 4772087.583417699 12337339.973560372 2690017.1519584926 4.899839651520187 1.682898412083628 0.7314164399310201 0.6867608671277433 0.7373789026520853 1.5938232526753588 1.8087857368867415 1.7739989426994303 4.586342493979287 1.0 21.359183940978404 1.4348882236159073 21.55954996147149 2.9221848142361173 1.6333964406299513 0.07836554712570831 1.402896248044019 32.316181215235694 16500.37255889465 0.7744439159693 0.3405249458802041 27.220006439909106 -1.4348882236159073 -1.288788373606166 NAVASVQNGPGGGPSSSSIGSASKS(ph)DESSTEETDKSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NAVASVQNGPGGGPSSSSIGSASKSDESSTEETDKSR 37 2 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y815 Q8NI27 THOC2 THO complex subunit 2 1 NAVASVQNGPGGGPSSSSIGS(0.03)AS(0.154)KS(0.81)DES(0.001)S(0.002)T(0.002)EETDKS(0.001)R 232.55 5.2547e-41 49816000.0 21669.0 13751.0 14440.0 13357.0 13768.0 19473.0 18467.0 17525.0 35012.0 21022.0 True False 21552.336511652215 14208.693722344964 16473.026485270002 15047.994830475942 15521.273190670558 18126.877344511355 17573.68065920923 18832.804490146857 26383.76173676373 19680.357962160313 1.0951191311200326 0.7219733375614513 0.8370288038938575 0.7646199758870709 0.7886682356344085 0.9210644125154707 0.8929553361274414 0.9569340418683919 1.340613915025943 1.0 14.264468841361605 1.4624039167045035 3.968831594965301 1.1713238390007399 0.8529180391057656 0.48499041630738593 0.12474454943651367 0.15258991225552715 4.673936073517829 0.08110763657058552 0.030251402937969556 29.00039523074244 -1.4624039167045035 -0.3184057998949743 NAVEEYVYEFR ddPTM_BT-474_Trastuzumab_2h_R1 8 NAVEEYVYEFR 11 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ;;;;;;; 294.24 3.5813e-35 2807623000.0 1338601.0 1446811.0 1363733.0 1375383.0 1327736.0 1512593.0 1523129.0 1424415.0 1854758.0 1503817.0 False True 1331394.120948551 1494967.2295192818 1555734.7526202693 1549506.3467788047 1496815.3094921678 1408031.0061709278 1449449.4313521807 1530712.0803328096 1397677.7433838781 1407842.111577491 0.9456984629169248 1.0618855745437012 1.1050491669673557 1.1006250871715852 1.0631982785448733 1.0001341731376576 1.0295539673323655 1.087275389580187 0.9927801788922028 1.0 20.425054115219385 1.2170474821284372 24.961778796568126 0.9963899966392106 1.0526998944936636 0.1705411359475193 0.046045183406434584 460.2237083140134 533985.4058457578 0.04474163352626007 0.011226294301547339 16.483425976755484 -1.2170474821284372 0.05630989785445306 NAVEEYVYEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 NAVEEYVYEMR 11 0 P34932;A0A087WYC1 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 150.46 7.8816e-05 520370000.0 333110.0 384070.0 366640.0 326260.0 364100.0 397280.0 412790.0 471740.0 547760.0 492630.0 False True 331316.5727720001 396853.5377747821 418259.72510799125 367564.4825478087 410465.9768102231 369816.96869652683 392821.7706890657 506943.6342471822 412771.887607954 461189.931638238 0.7183950690230768 0.8604991361478332 0.9069142589957457 0.7969915588619786 0.890015042939395 0.8018756337174657 0.8517570392174107 1.0992079390077272 0.8950149586781013 1.0 18.815001491905814 1.8485733341481865 7.8087262429715025 1.0046727332157284 0.8351051430564421 0.5560660615782864 0.06786531502317573 0.18713997918124958 11.838718430982544 0.027514961989251203 0.01709632076238228 70.56239843283639 -1.8485733341481865 -0.16956759015928624 NAYAVLYDIILK ddPTM_BT-474_Trastuzumab_2h_R1 2 NAYAVLYDIILK 12 0 Q06323;H0YKK6 Q06323 PSME1 Proteasome activator complex subunit 1 0 ; 186.72 2.6514e-05 109144000.0 560700.0 505530.0 476880.0 478840.0 430330.0 562750.0 529980.0 512960.0 804340.0 590790.0 False True 557681.253499626 522356.26045066165 544020.5588847334 539461.094903429 485129.97473425756 523848.41707100946 504342.8426797922 551239.6799581009 606121.1846038074 553085.2763992344 1.0083097079175798 0.9444407268466289 0.9836106331133685 0.9753669423556106 0.877134133623321 0.9471386048846455 0.9118717568531721 0.9966630888221271 1.0958910144017104 1.0 19.077142411232032 1.4873656554220847 5.1466311728001735 1.04855664953829 0.9491759924495716 0.4822690184367946 0.04080253775740152 0.12777270381475778 7.493370405810798 0.024507839621629696 0.010260521357358499 30.716070479107405 -1.4873656554220847 -0.09938065708871846 NCEEVGLFNELASSFEHEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NCEEVGLFNELASSFEHEFK 20 0 P17544;K7ELQ4;P17544-2;P17544-1;P17544-3;P17544-4;K7ESA4;P17544-5 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 0 ; 87.352 0.0023754 23457000.0 37367.0 37692.0 30995.0 31155.0 31581.0 43173.0 37976.0 40404.0 59801.0 42133.0 False True 37165.82022386399 38946.55543470486 35358.82658663043 35099.21980560589 35602.65315474773 40188.552128310424 36138.95579759191 43419.151647354796 45063.84484234566 39444.03586812389 0.9422418220113982 0.9873876893560718 0.8964302411864791 0.889848592647965 0.9026118238453252 1.0188752556324543 0.9162083697119106 1.1007786270279543 1.1424755061325593 1.0 15.267519553705455 1.7193339699777197 6.4407939326042 1.0903914338262428 0.9367566828499402 0.6268950937498025 0.050939062890505385 0.08085858567233184 8.506721348757772 0.02541734545428895 0.01312435188534079 52.40032371887132 -1.7193339699777197 -0.15363475097630264 NCHLNENIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NCHLNENIEK 10 0 Q13907;Q13907-2;Q9BXS1 Q13907 IDI1;IDI2 Isopentenyl-diphosphate Delta-isomerase 1;Isopentenyl-diphosphate delta-isomerase 2 0 107.18 0.0023187 219230000.0 308970.0 271200.0 254860.0 269250.0 247640.0 294330.0 306730.0 206150.0 393570.0 254300.0 False True 307306.5398497941 280226.72805613815 290742.07271716814 303337.0223931755 279175.48612272314 273983.6598782943 291892.29807761154 221533.95980848937 296579.94706780784 238070.3562828164 1.2908223629687368 1.1770752664529218 1.2212443298559195 1.274148647187411 1.172659588878322 1.1508516396422515 1.2260757812739072 0.9305398759739638 1.2457659647280268 1.0 17.861028466711353 1.7681627036360013 24.999999999876007 1.0537806512764707 1.2128697885901287 0.4194637756228782 0.08471104346612497 20.62021012493939 17424.158309163162 0.03664342340326014 0.02032447700025692 58.63577958490627 -1.7681627036360013 0.15908913731365804 NCIVLIDSTPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 NCIVLIDSTPYR 12 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ; 139.32 0.00013664 93198000.0 297300.0 336360.0 310050.0 304630.0 275250.0 324030.0 280810.0 287860.0 406570.0 330540.0 False True 295699.3698331352 347555.53926608624 353702.3449970884 343196.12676558254 310301.4559654321 301630.5687845747 267226.1475016268 309341.5749234619 306376.2712588835 309444.65421046846 0.9555807987298938 1.1231589705527654 1.143022961245012 1.1090711120579193 1.0027688368285106 0.9747480354901235 0.8635668571604188 0.9996668894239922 0.9900842269858765 1.0 18.23932187342013 3.072096859642022 3.4929279572537544 0.9614033744329298 1.089661440970417 0.4555260793417162 0.060053738504395396 0.20155169843248252 4.951020453215595 0.018416500455749198 0.022131979814916304 1180.5839090498837 -3.072096859642022 0.12825806653748728 NCLALADDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NCLALADDKK 10 1 O75367-2;O75367-3;O75367;B4DJC3 O75367-2 H2AFY Core histone macro-H2A.1;Histone H2A 0 ; 119.45 0.0011079 1106340000.0 649630.0 708530.0 676060.0 693930.0 680300.0 1085760.0 812420.0 858610.0 1457260.0 880640.0 False True 646132.464260679 732112.9927345697 771243.371581138 781781.4668497539 766932.1725459888 1010703.9668041201 773120.1408542142 922683.838133237 1098137.799283569 824436.8012461647 0.7837258881263275 0.888015905680042 0.9354790693663565 0.9482612441221258 0.9302498037287326 1.2259326188210014 0.9377554952491403 1.1191686697374117 1.331985420378731 1.0 19.653049379835984 3.4608932790456883 0.5806432047901241 1.1393472120319854 0.7875523650121485 0.5039610693406573 0.1112134062491852 0.9894590191106971 0.6320273947272934 0.07376925361143598 0.19823677242551518 2889.9696310783675 -3.4608932790456883 -0.3517948470198369 NCLTNFHGMDLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 NCLTNFHGMDLTR 13 0 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;D6RB09;D6RAS7;D6RED7 P61247 RPS3A 40S ribosomal protein S3a 0 ;;; 232.53 5.8904e-13 4100590000.0 2495930.0 2270700.0 2538160.0 2254860.0 1580030.0 2220660.0 2282120.0 1862040.0 3694860.0 2271180.0 False True 2482492.1902038893 2346278.876832866 2895510.865917793 2540325.0448039956 1781237.4549284698 2067151.001071358 2171725.137054996 2000994.8800475318 2784311.261587417 2126231.3479449754 1.1675550699613397 1.103491809158288 1.3618042405010793 1.1947547698698198 0.8377439532391686 0.9722135848807238 1.021396443596785 0.9410993220382693 1.3095053199542388 1.0 21.019867149436084 3.372309144286884 9.90562274312042 1.0048456708398845 1.213098595845511 0.354871690878773 0.12742945102799982 0.32184081374293694 27.980284534716517 0.03484900516667609 0.047193129506247426 2356.7262778427234 -3.372309144286884 0.20825292500562642 NCPAVTLTS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NCPAVTLTSPAK 12 0 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 NCPAVTLT(0.02)S(0.98)PAK 145.1 6.6723e-05 143820000.0 586950.0 377760.0 336750.0 314050.0 326250.0 587770.0 530570.0 465240.0 867990.0 498380.0 True False 583789.926416275 390333.5132392582 384161.4729165287 353808.6977997282 367796.00366474956 547138.8433617543 504904.30212577275 499958.5712408519 654085.4949701118 466572.9617154155 1.2512296560647154 0.8365969425320894 0.8233684856150035 0.7583137619010433 0.7882925798196712 1.1726758476319072 1.0821550830323023 1.071554959813123 1.401893269951354 1.0 18.831743178824215 2.7310263261300474 24.450843482094662 1.1381643184942736 0.8773157468596644 0.37764146058908976 0.1624419235226189 458.3856639620518 1487583.5398556467 0.05197829127593765 0.049902471445992 538.3024124261556 -2.7310263261300474 -0.26084857163460917 NCPHIVVGTPGR ddPTM_BT-474_Trastuzumab_2h_R1 6 NCPHIVVGTPGR 12 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6UJC5;A0A140T9X9;A0A140TA18;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ;;;;; 154.36 6.3164e-05 3723150000.0 2658730.0 2509000.0 2258840.0 2429640.0 2872530.0 2842010.0 2644090.0 2445310.0 3390380.0 2571390.0 False True 2644415.693092673 2592510.548277471 2576865.037810754 2737232.1748833954 3238329.668680774 2645548.538071929 2516185.2652953155 2627791.4492325787 2554866.2777644494 2407281.6887222617 1.0985069613919083 1.0769452367884398 1.0704459930397692 1.1370635134670364 1.3452225735990275 1.0989775523429228 1.0452392327342703 1.0916011456172208 1.0613075693358192 1.0 21.198973538367486 2.4811538420918464 24.786286514536243 1.0618926742145092 1.1456603779997052 0.2573808460167408 0.07582372378226064 262.86642072554787 1615723.1525867581 0.02784654627540063 0.023835330558424284 302.79858552224647 -2.4811538420918464 0.08376770378519605 NCPHVVVGTPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 NCPHVVVGTPGR 12 0 O00148;O00148-2;O00148-3;K7EQN7;K7EPJ3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 ; 80.469 0.020258 1399030000.0 413780.0 383290.0 368020.0 351370.0 334530.0 455330.0 384370.0 341053.0 542880.0 354770.0 False True 411552.25445527973 396047.57594630186 419834.01711281657 395853.40597322216 377130.4125853446 423854.1088315282 365776.554664009 366504.1066920426 409094.49821930396 332128.27486612205 1.239136459011726 1.1924536569671615 1.2640718929517456 1.1918690335316593 1.1354962558889707 1.2761759263115435 1.1013110967786477 1.103501672177044 1.2317364379296112 1.0 18.34138102254912 -4.999999999844541 0.10666377358706426 0.3851416763214381 1.303641558826138 0.5304783948448586 0.05683555024531004 130.20160051393543 0.9312817148534469 17.482586619217358 0.7670963013757726 1.000000000357957e-05 4.999999999844541 0.9184998825046999 NCPS(ph)PVLIDCPHPNCNKK ddPTM_BT-474_Trastuzumab_2h_R1 4 NCPSPVLIDCPHPNCNKK 18 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK 239.56 3.0074e-24 6175900000.0 4245940.0 3470010.0 3234870.0 2984020.0 2958550.0 4461350.0 4386240.0 4020780.0 6001180.0 4446670.0 True False 4223080.330808282 3585507.1851846552 3690311.578005911 3361796.6260415376 3335303.8058002884 4152947.3753882707 4174060.814136021 4320831.020707139 4522269.600692102 4162879.713614281 1.0144612915422757 0.861304537207408 0.8864804731054603 0.8075651609742935 0.8012011000203806 0.9976140703288814 1.0026859052605275 1.037942798725674 1.0863320373880783 1.0 21.989150441739536 2.585512945825865 5.09752768807448 1.030484877024131 0.870930894942733 0.6225438953241469 0.05903976111013702 0.152177300404338 5.915787301631243 0.020059925695527378 0.018748849109960188 385.0462923007443 -2.585512945825865 -0.15955398208139804 NCQHANAERPTVAR ddPTM_BT-474_Trastuzumab_2h_R1 3 NCQHANAERPTVAR 14 1 Q9Y5J1;F6VJE8 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 0 ;; 123.68 6.0989e-05 153776000.0 114405.0 192625.0 201537.0 209842.0 219370.0 170411.0 176604.0 136818.0 107275.0 172464.0 False True 113789.05619159054 199036.40668072843 229911.65780899292 236407.97568441488 247305.46919214123 158630.88867434527 168060.98982720487 147028.05390772666 80838.51366135395 161457.19986614087 0.7047629730103675 1.2327502697045614 1.423978973991903 1.464214515552192 1.531709142715063 0.9824949819881752 1.0409011797958778 0.9106317589405925 0.500680760773596 1.0 17.30079225096984 2.0798819138839693 1.5035150079761332 0.7829638452063374 1.2753817218495047 0.36880968608661524 0.25321760840038987 0.42996658176052405 1.8364537114948256 0.1661218155953735 0.08532295205009045 120.19375793520759 -2.0798819138839693 0.4924178766431673 NCSASTS(ph)QER ddPTM_BT-474_Trastuzumab_2h_R1 7 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 NCSAS(0.001)T(0.006)S(0.993)QER;NCSAS(0.001)T(0.024)S(0.974)QER;NCS(0.004)AS(0.066)T(0.04)S(0.89)QER;NCS(0.002)AS(0.02)T(0.043)S(0.936)QER;NCS(0.037)AS(0.034)T(0.021)S(0.908)QER;NCSAST(0.006)S(0.994)QER;NCS(0.002)AS(0.003)T(0.001)S(0.993)QER 160.23 7.8067e-06 855699000.0 2127790.0 1932902.0 1946640.0 1949120.0 1930918.0 1950737.0 2151138.0 1992577.0 2462202.0 2185651.0 True False 2116334.2150596934 1997237.4746060655 2220709.9915018 2195878.3921522237 2176808.961852353 1815887.142730964 2047079.2367948252 2141273.213840991 1855425.308916462 2046160.8819500357 1.0342951200605404 0.9760901462951705 1.0853056624684443 1.0731699601546014 1.0638503458133786 0.8874605896093489 1.0004488184936438 1.0464833106379743 0.9067836870912132 1.0 20.9644881525631 NCSETQYESK ddPTM_BT-474_Trastuzumab_2h_R1 2 NCSETQYESK 10 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ; 152.54 4.1529e-05 432720000.0 201768.0 220660.0 224110.0 220710.0 226100.0 234638.0 239668.0 218961.0 263610.0 247463.0 False True 200681.70350653198 228004.53470821312 255662.74000095986 248651.86337009416 254892.49480030578 218418.02733844047 228074.3432193296 235300.98168142885 198646.8476930277 231669.69947626654 0.8662406173971442 0.9841793519983872 1.1035657255952511 1.0733033449441987 1.100240969693226 0.9427992863642333 0.984480679756287 1.0156743942491033 0.8574571821092992 1.0 17.82170983813049 2.7066253262797275 24.829953503924276 0.967618977747983 1.030202168075767 0.15190592729837005 0.07585556148147991 1310.5033855465554 1018926.0369581534 0.02565681304466556 0.024190694449875233 508.8916515726592 -2.7066253262797275 0.06258319032778392 NCVAIAADRR ddPTM_BT-474_Trastuzumab_2h_R1 1 NCVAIAADRR 10 1 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 PSMB3 Proteasome subunit beta type-3 0 125.3 0.0054356000000000005 0.0 59404.0 66244.0 67311.0 69103.0 57230.0 57908.0 75108.0 58768.0 110080.0 59736.0 False True 59084.175464404885 68448.89149465636 76787.80372229987 77851.43271470981 64517.901271214076 53904.9562607695 71474.73909957698 63153.56657785734 82952.25899642843 55923.597337437364 1.0565160017853807 1.2239715389130394 1.373084125096066 1.392103448656246 1.1536793829967615 0.9639035903844384 1.27807835158217 1.1292829786466536 1.4833140739481194 1.0 15.771169545948714 NCVLLSRPEISTDER ddPTM_BT-474_Trastuzumab_2h_R1 2 NCVLLSRPEISTDER 15 1 O94855;O94855-2;E9PDM8 O94855 SEC24D Protein transport protein Sec24D 0 ; 113.47 0.00062216 847780000.0 920360.0 957470.0 847710.0 929860.0 858120.0 1091740.0 852300.0 856120.0 1209190.0 984130.0 False True 915404.8840216098 989338.8101471617 967060.1995725908 1047580.180659305 967396.4955242735 1016270.5834795268 811070.9928978197 920008.021689274 911201.3268158716 921321.9808439183 0.9935776015927803 1.0738252540560695 1.049644119731928 1.13704025567667 1.0500091343073694 1.1030569167020599 0.8803339220832329 0.9985738328380696 0.9890150737326637 1.0 19.813345907613105 2.2586470685477456 24.99793435344866 0.9671692521661102 1.069635399977068 0.5221994213250352 0.04725393892361851 180.64464480039857 224814.76153155297 0.015851654640923002 0.013246856709462714 181.40408747632569 -2.2586470685477456 0.10246614781095786 NCVVLSDIHIDIMDYIQPATCTDAEFR ddPTM_BT-474_Trastuzumab_2h_R1 3 NCVVLSDIHIDIMDYIQPATCTDAEFR 27 0 P53618 P53618 COPB1 Coatomer subunit beta 0 ;; 204.92 3.2927e-25 468922000.0 478565.0 454930.0 347853.0 386762.0 392962.0 485713.0 384366.0 384788.0 584563.0 475617.0 False True 475988.4592135701 470072.0700390081 396827.6788075227 435726.02954439825 443003.381431746 452136.80355541804 365772.74815929035 413502.83447387326 440505.28139288805 445262.7158637999 1.069005875082451 1.0557184630360945 0.8912214399934333 0.9785818888947379 0.9949258396188173 1.0154382737352767 0.8214762546414857 0.928671590370388 0.9893154438909565 1.0 18.764297287002766 NCWQNYLDFHR ddPTM_BT-474_Trastuzumab_2h_R1 4 NCWQNYLDFHR 11 0 P14854;A0A494C160 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 ;;; 224.82 5.9293e-12 2827579000.0 1817415.0 2029144.0 2295105.0 1689666.0 1466103.0 2470799.0 2139780.0 1476621.0 3285060.0 1850772.0 False True 1807630.2395737881 2096682.831396548 2618235.8345897235 1903577.5423546433 1652802.5267767026 2299998.4807652277 2036270.6666465974 1586813.957149508 2475500.980548757 1732654.1464343702 1.0432723941438118 1.210098873864304 1.5111127861136004 1.098648305706027 0.9539136994985443 1.327442343585069 1.1752320397218567 0.9158284475958536 1.428733475542763 1.0 20.724552277475286 NDAPT(ph)PGTSTTPGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDAPTPGTSTTPGLR 15 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 NDAPT(0.334)PGT(0.242)S(0.099)T(0.072)T(0.253)PGLR 103.79 0.01615 397990000.0 953460.0 743130.0 723560.0 731170.0 697570.0 875400.0 843520.0 861360.0 974520.0 856930.0 True False 948326.6772993655 767864.6328184279 825430.9587037358 823736.0470314514 786401.4046786791 814885.6584699455 802715.7150406762 925639.0570974542 734362.6038989763 802239.9937453159 1.1820984801219312 0.957150776332648 1.0289077646829239 1.0267950407031934 0.9802570437897352 1.0157629447836332 1.0005929912483411 1.1538181396018923 0.9153901695558095 1.0 19.613674364473294 4.753085630337555 24.343772096756737 1.0197994791387774 1.1820986441237962 0.42392153143262346 0.05938002546075071 1906.6637628941537 3195470.004328696 0.014374675813754269 0.3098294821882741 56635.094609109736 -4.753085630337555 0.16229916498501873 NDAPTPGTSTT(ph)PGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDAPTPGTSTTPGLR 15 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 NDAPTPGT(0.001)S(0.005)T(0.191)T(0.803)PGLR;NDAPTPGT(0.005)S(0.026)T(0.145)T(0.825)PGLR 175.26 9.6817e-06 2380100000.0 2354600.0 1848480.0 1719610.0 1738410.0 1715540.0 1999250.0 2115420.0 1927760.0 2366800.0 1943430.0 True False 2341923.095220654 1910005.5393702416 1961716.1408819333 1958492.5277568062 1934003.8501977732 1861046.5532282805 2013089.052910837 2071619.2401669323 1783533.853495155 1819398.6335458695 1.2871962482770607 1.049800469316494 1.0782222788959106 1.076450477452461 1.0629907127216793 1.0228910360349355 1.1064584834756526 1.138628556694859 0.9802875634896918 1.0 20.795030244051727 4.741396379888829 24.685738886022335 1.0674706546993356 1.2871963437075515 0.6869461302008224 0.04610050232198643 132.24782807220328 1151163.0218866342 0.011003261881041539 0.07703345938797476 55131.06472076761 -4.741396379888829 0.21972568900821599 NDDGWYEGVCNR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDDGWYEGVCNR 12 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 0 184.55 3.2975e-05 178540000.0 72769.0 82451.0 72418.0 69921.0 67790.0 79099.0 74082.0 74302.0 90094.0 77912.0 False True 72377.219789396 85195.33169231788 82613.82493146005 78772.99143083836 76422.65467719035 73631.07230901791 70498.3706392775 79846.792537911 67891.54089774909 72939.58945618082 0.992289925526347 1.168025928408876 1.1326335334131696 1.0799757993998857 1.0477527395887252 1.0094802131187275 0.9665309493088126 1.0946975864990265 0.9307913768631176 1.0 16.154414458971228 3.142313750411753 2.2458703995492564 1.0111126450550731 1.1041867522995388 0.35759433848517386 0.05763260230519199 0.34038076060104777 3.51068372589452 0.017926902880379895 0.022928343898502963 1387.7580345934539 -3.142313750411753 0.09307410724446563 NDEELNK ddPTM_BT-474_Trastuzumab_2h_R1 3 NDEELNK 7 0 A0A0U1RR32;A0A0U1RRH7;P20671;A0A3B3IS11;Q7L7L0;P04908;Q99878;Q96KK5;Q6FI13;P0C0S8;Q16777;Q9BTM1;Q9BTM1-2;Q96QV6;H0YFX9;Q8IUE6;P16104 A0A0U1RR32;Q7L7L0;Q99878;P16104 HIST1H2AD;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG;HIST2H2AC;H2AFJ;HIST1H2AA;HIST2H2AB;H2AFX Histone H2A type 1-D;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-C;Histone H2A.J;Histone H2A type 1-A;Histone H2A;Histone H2A type 2-B;Histone H2AX 0 ;; 160.52 0.0031254 29474788000.0 5504570.0 4628920.0 4571120.0 4173347.0 4263610.0 4687940.0 5607930.0 5453190.0 8076390.0 4889320.0 False True 5474934.006735216 4782990.8039587755 5214693.963112698 4701692.302297094 4806555.46110364 4363873.742023755 5336653.001527013 5860134.728537737 6086071.902581433 4577279.411642551 1.1961109459058656 1.0449418472888035 1.1392562031168227 1.0271805322476255 1.0500900270317588 0.9533771809787298 1.1659006413182806 1.2802658962946802 1.329626477925116 1.0 22.126058930628577 2.007195421276688 24.54376853838919 1.231599414859891 1.0672340022093831 0.26160264550547774 0.10137603107519433 142.1862611679466 484998.0511692626 0.03619173482795786 0.02666831153758501 101.67060813792816 -2.007195421276688 -0.16436541265050786 NDEELNKLLGR ddPTM_BT-474_Trastuzumab_2h_R1 3 NDEELNKLLGR 11 1 Q7L7L0;P04908 Q7L7L0 HIST3H2A;HIST1H2AB Histone H2A type 3;Histone H2A type 1-B/E 0 ;; 132.32 0.00016863 1309870000.0 298369.0 656510.0 532232.0 776630.0 733900.0 640640.0 788600.0 588730.0 1435430.0 785290.0 False True 296762.6144559125 678361.5384813249 607165.6393565247 874951.2783703315 827357.8148338979 596354.0647043468 750452.4052554498 632664.0221103649 1081687.5102765555 735172.1198794069 0.4036641303870332 0.9227247880300455 0.8258822974082863 1.19013120153938 1.12539335002205 0.8111761158763325 1.020784636635227 0.860565852543678 1.4713391340982693 1.0 19.48772253040762 4.90014162372677 1.4740711672576503 1.0309645842799817 7.479662774491981e-15 0.5149788563737847 0.18529608789995128 1.433032328510826 2.134688721488102 0.048200226363507424 2.4108988355273033 79458.73079430978 -4.90014162372677 -1.0309645842799742 NDFTEEEEAQVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDFTEEEEAQVR 12 0 E5RJR5;P63208 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ; 302.09 3.1684999999999986e-36 741350000.0 402470.0 431870.0 387550.0 374160.0 418830.0 480790.0 419170.0 402040.0 521820.0 432200.0 False True 400303.1462386203 446244.53187907254 442113.671355013 421528.61763651087 472165.51790009823 447554.11895792175 398893.14571509894 432042.26631775434 393224.4530297623 404616.6259749642 0.9893393413433021 1.1028823415345372 1.0926730217516296 1.0417975697879334 1.166945418425079 1.1061189536626068 0.9858545598662093 1.0677817928927298 0.9718445258700102 1.0 18.626196076880756 2.244423046417876 24.99933929854582 1.0170588837375605 1.0865258351529103 0.35847229790158786 0.04948154170329122 170.98596648413093 729142.5121579353 0.017308364334369473 0.014119887621660599 175.558978987099 -2.244423046417876 0.06946695141534986 NDHDDDEDEEVISK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDHDDDEDEEVISK 14 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 0 117.0 0.00032912 335910000.0 451150.0 380170.0 321460.0 340360.0 320730.0 485170.0 411590.0 280910.0 564650.0 382910.0 False True 448721.05852747685 392823.7286323818 366718.7738195907 383449.5411021026 361573.06438435236 451631.33986733324 391679.8192735111 301872.9306320767 425499.5734223587 358472.3559742561 1.251759169289199 1.0958271177278525 1.0230043341080581 1.0696767399538063 1.0086497838910595 1.2598777348950372 1.092636050579141 0.8421093721764025 1.1869801571335565 1.0 18.451502342494866 4.708662967745411 2.954176594660474 1.0511164368722183 1.2785193866790368 0.22005657623805108 0.10636547674996409 0.5393566485876734 7.099546572154674 0.027308183689649136 0.2803152571949169 51128.49012218631 -4.708662967745411 0.2274029498068184 NDHQEDFWK ddPTM_BT-474_Trastuzumab_2h_R1 6 NDHQEDFWK 9 0 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 ;;;;; 160.53 6.5223e-05 5800510000.0 9630010.0 7986790.0 7438700.0 7182130.0 6988580.0 9832720.0 9568130.0 5227760.0 12526700.0 7786430.0 False True 9578163.096154694 8252625.477033493 8486004.301660527 8091386.921599618 7878534.238441041 9153007.210133191 9105282.998093875 5617881.997227388 9439662.634180222 7289493.371101898 1.3139682840135205 1.1321260692478008 1.1641418504202248 1.1100067603705774 1.0808068321557582 1.255643807348658 1.2490968212126239 0.7706820915015353 1.2949682719518405 1.0 22.797387118252534 7.99999999921853 0.15510184859785137 0.9824456670736189 1.9708181338681077 0.1255124150525031 0.14502762860616292 122.32800479718922 1.233557741816724 0.47075761610974537 27.44917751948855 99999999.82005988 -7.99999999921853 0.9883724667944888 NDHSAYK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDHSAYK 7 0 Q7L576;Q96F07;Q96F07-2;E7EVJ5;A0A087WTQ3;A0A087WWZ1;A0A0G2JR96;A0A0G2JQT1 Q7L576;A0A0G2JR96 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 0 64.265 0.074452 37628000.0 75424.0 66330.0 59385.0 58116.0 55123.0 49759.0 67760.0 45761.0 85811.0 58536.0 False True 75017.9255643941 68537.75395266827 67745.89181632678 65473.47964123228 62142.58731038149 46319.27745008683 64482.189931662826 49175.91818964966 64664.02885848936 54800.182364809094 1.3689356919470435 1.2506847786820687 1.2362347877847757 1.1947675503225559 1.1339850458287426 0.8452394764261145 1.1766783822433264 0.8973677836011883 1.179996599792604 1.0 15.741893073763864 3.31429114547016 1.6477871174912102 1.0161521893624235 1.2875469571909537 0.5433972310505832 0.1055320870110074 0.26120657165778155 1.4624580147310957 0.032297424260643144 0.04935682230403508 2062.0117963745724 -3.31429114547016 0.2713947678285302 NDHSAYKR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDHSAYKR 8 1 Q7L576;Q96F07;Q96F07-2;E7EVJ5;A0A087WTQ3;A0A087WWZ1;A0A0G2JR96;A0A0G2JQT1 Q7L576;A0A0G2JR96 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 0 ; 99.442 0.004421100000000001 69938000.0 62573.0 66285.0 62244.0 59590.0 54453.0 66264.0 78645.0 40866.0 90113.0 63047.0 False True 62236.11392051388 68491.25615487127 71007.41416545327 67134.08789009972 61387.26678178266 61683.325648677644 74840.64089692482 43915.628433343285 67905.858602336 59023.28648274764 1.0544332182977536 1.1604107503381924 1.203040670841136 1.1374169737180402 1.0400516548621197 1.0450676220258852 1.2679849828220011 0.7440390234145927 1.1504926724503 1.0 15.848996633432831 1.750081909786126 24.99999999903798 0.9433693541443668 1.1273547960787325 0.2963505064686337 0.11499975591305862 3.362026120976018 7308.056719692761 0.05029048197074912 0.027888718286541183 56.24473951579478 -1.750081909786126 0.1839854419343656 NDIASHPPVEGSYAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 NDIASHPPVEGSYAPR 16 0 Q7KZF4;H7C597 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;; 115.73 0.000483 4658150000.0 992200.0 1076200.0 891040.0 1015440.0 1118420.0 1088390.0 1125620.0 922800.0 1119720.0 1061880.0 False True 986858.1054437825 1112020.6664233606 1016490.6869414797 1143994.599884592 1260844.1576052979 1013152.1610944747 1071169.4603140263 991664.021883452 843780.0094792938 994109.9092787937 0.9927052293037978 1.1186093771362853 1.0225133835341433 1.1507727558158398 1.2683146459328771 1.019155076956728 1.0775161280618737 0.9975396207476533 0.8487793971306843 1.0 19.923045840113303 1.617559693780839 2.4958949529145524 0.9227714728925964 1.099593844658394 0.40594582236352694 0.08229730221667046 0.23727831274491326 3.3465798258204287 0.058102491252976216 0.02261666892798504 41.453355776395014 -1.617559693780839 0.17682237176579751 NDIHTLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDIHTLLK 8 0 O43324;H0YAL7;D6RBD7;C9J1V9;O43324-2;H0YAH9 O43324 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 0 113.62 0.0028132 550810000.0 1053100.0 897680.0 839040.0 805960.0 847940.0 1069800.0 1053200.0 1002800.0 1500800.0 1033400.0 False True 1047430.2266104093 927558.7361409809 957169.538933583 907994.4533630584 955920.132865862 995847.2440383221 1002252.6923852924 1077634.0281152218 1130947.9496896786 967447.5272617491 1.0826739405443955 0.9587690391501966 0.9893761800629571 0.9385464614634285 0.9880847342403012 1.0293553045269082 1.0359762820646772 1.1138940332664273 1.1690018505610313 1.0 19.88382388844611 2.0940134316950303 1.869549396344324 1.1047855385810177 0.9890067875558564 0.38678318489728647 0.0536350649791673 0.30098855544725667 2.0170273690694853 0.028867997217170184 0.016010399291948016 124.16907095379214 -2.0940134316950303 -0.11577875102516133 NDINEAVALLTNERPGLDYGGYEPMDSGGGPS(ph)PGPGGGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDINEAVALLTNERPGLDYGGYEPMDSGGGPSPGPGGGPR 40 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 NDINEAVALLTNERPGLDYGGYEPMDS(0.093)GGGPS(0.907)PGPGGGPR 78.22 0.00086284 32082000.0 31498.0 30787.0 31872.0 27488.0 32878.0 29031.0 28556.0 21161.0 29791.0 26129.0 True False 31328.418267756773 31811.72668386549 36359.300563609795 30967.97798159185 37064.81841682643 27024.15530162324 27174.637185486485 22740.141273380734 22449.407228948025 24461.42484983764 1.2807274498551835 1.3004854328457747 1.4863934045874325 1.265992401166173 1.5152354633615073 1.1047661968800893 1.1109180005786479 0.9296327345188017 0.9177473252992877 1.0 14.578220821187633 2.3652895040847532 1.8542453500421778 0.9584223606907757 1.3655741058655178 0.7846137693474332 0.09412799439703176 0.1437883746632692 1.0083885735434974 0.04115267720104442 0.029753605701376543 231.89399582945123 -2.3652895040847532 0.40715174517474206 NDIPSSYMALFPHLLQPVLWER ddPTM_BT-474_Trastuzumab_2h_R1 2 NDIPSSYMALFPHLLQPVLWER 22 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ; 137.24 3.3059e-06 388680000.0 186723.0 177148.0 194886.0 167551.0 189106.0 218950.0 178882.0 188486.0 246103.0 169517.0 False True 185717.7041148754 183044.26409177246 222324.25482052116 188762.93942060883 213187.5281809225 203814.5018528611 170228.79426439942 202551.78243251442 185454.21326124627 158698.27992919448 1.170256566093445 1.15341051064599 1.4009241619991994 1.189445402337241 1.343351221424953 1.2842892937705177 1.0726568324518038 1.2763325634208877 1.168596240261642 1.0 17.27592696586719 0.22872661981963865 0.5849353367078775 0.9882212452292346 1.2489590044478924 0.3813419488935401 0.09100514101735871 2.941639133692103 1.4033347089459676 0.16814689090765647 0.03783391032384998 1.6932715823947342 -0.22872661981963865 0.2607377592186578 NDKESEAQISWFAPEDHGYGTEVSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDKESEAQISWFAPEDHGYGTEVSTK 26 1 Q9H2U1-2;Q9H2U1;E7EWK3;Q9H2U1-3 Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 0 173.53 2.1638e-12 91560000.0 74723.0 53147.0 62019.0 60084.0 57036.0 76668.0 68717.0 76493.0 121220.0 84018.0 False True 74320.69967050571 54915.96576696007 70750.73612118838 67690.62823944876 64299.19652114218 71368.12161705937 65392.896185567835 82201.29608358354 91346.95526478051 78655.8993085712 0.9448839861196136 0.6981798727076004 0.8994968812654415 0.8605918797507469 0.817474557997145 0.90734607632008 0.8313794230363839 1.0450747726003813 1.1613490668566593 1.0 16.263267353506333 1.6618791835080486 4.187317288324687 1.0870776837500244 0.8482471544388752 0.652772660281922 0.07276209143003072 0.09185905784206447 3.749107822325706 0.03808712252856594 0.017734872412298618 45.90702861923149 -1.6618791835080486 -0.23883052931114923 NDKS(ph)EEEQSSSS(ph)VKKDETNVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 NDKS(0.964)EEEQS(0.015)S(0.043)S(0.16)S(0.818)VKKDETNVK 93.147 0.0025315000000000003 406200000.0 535130.0 184310.0 127950.0 140670.0 180160.0 383100.0 290270.0 285390.0 826240.0 276550.0 True False 532248.9195385325 190444.64693225225 145964.24783866326 158478.80757677997 203102.3081080192 356617.19872039754 276228.53116091783 306687.25098105613 622624.2230487731 258900.34223363307 2.0558061644361527 0.7355905569270896 0.5637854572897564 0.6121228199604613 0.7844806474791701 1.3774303874754412 1.0669299575959916 1.1845764603288933 2.4048798764696637 1.0 17.982037346737172 1.4292671071374738 7.80642751489762 1.738125908381397 1.0034564758336433 0.20511825526002736 0.5204513009888162 0.29517878019754046 36.52493300438855 0.3185243773140379 0.12543384265783306 26.86996539613957 -1.4292671071374738 -0.7346694325477536 NDKS(ph)EEEQSSSSVK ddPTM_BT-474_Trastuzumab_2h_R1 7 NDKSEEEQSSSSVK 14 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKS(1)EEEQSSSSVK;NDKS(0.999)EEEQS(0.001)SSSVK;NDKS(1)EEEQSSSSVK;NDKS(0.952)EEEQS(0.024)S(0.024)SSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(0.426)EEEQS(0.413)S(0.054)S(0.054)S(0.054)VK 288.78 5.0184e-35 20133700000.0 13871041.0 7044042.0 6200778.0 5714040.0 7694549.0 11799958.0 10050531.0 9934896.0 17895334.0 8803185.0 True False 13796360.85647355 7278498.679756691 7073793.644271431 6437436.878126279 8674404.20598495 10984254.677573346 9564348.418773104 10676288.387899691 13485268.72089017 8241358.196514148 1.6740397065023827 0.8831673743819655 0.8583286244327345 0.7811135888801831 1.0525454663108766 1.3328209277712697 1.1605306056007298 1.2954525374731858 1.6362920284904061 1.0 22.974450686089998 2.7939151312708006 5.6270532814657255 1.291930191358178 1.0125789336041426 0.14858063322087645 0.2748256930694301 0.36427570142736354 25.63894594573603 0.08434118923159639 0.08886109665726744 622.1786887028298 -2.7939151312708006 -0.27935125775403535 NDKS(ph)EEEQSSSSVKK ddPTM_BT-474_Trastuzumab_2h_R1 3 NDKSEEEQSSSSVKK 15 2 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKS(1)EEEQSSSSVKK;NDKS(0.519)EEEQS(0.24)S(0.24)S(0.002)SVKK;NDKS(1)EEEQSSSSVKK 225.83 4.935899999999999e-13 2046720000.0 1912620.0 1000144.0 831365.0 853082.0 1086510.0 1866200.0 1425006.0 1431185.0 3197670.0 1522530.0 True False 1902322.6664320596 1033433.1884401841 948413.9656458785 961082.0937315313 1224870.6082506867 1737193.9865622704 1356073.0157284418 1537987.2921101733 2409647.0750827477 1425360.8318964879 1.3346253270485613 0.7250326831734027 0.6653851743519453 0.6742728383049372 0.8593407233036967 1.2187748868129613 0.9513892800913741 1.0790161043388797 1.690552329739997 1.0 20.442895754910726 2.1770555910272327 1.0479188071834538 1.267575150199855 0.8339479857505159 0.276210720761073 0.26288659738577214 0.6809998916142674 1.4115190891568699 0.1919467888804212 0.10283731807458073 150.33343851921 -2.1770555910272327 -0.433627164449339 NDKSEEEQS(ph)SS(ph)SVKKDETNVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 NDKS(0.003)EEEQS(0.985)S(0.014)S(0.541)S(0.457)VKKDETNVK 117.08 5.4969e-05 391620000.0 534070.0 183370.0 128350.0 138010.0 167190.0 375130.0 310030.0 304540.0 784020.0 271890.0 True False 531194.6264607545 189473.35960049412 146420.56436180082 155482.05184951608 188480.65548723208 349198.1460610355 295032.6644703874 327266.3212227856 590808.7763297586 254537.74742325954 2.0868992196173344 0.7443821653902958 0.5752410628445004 0.6108408415784865 0.7404821382889665 1.3718913976258673 1.1590919910978494 1.2857280483377145 2.3211047568018617 1.0 17.957520095304137 1.9481894958590567 1.3882701304545046 1.602304270342318 0.9342849459307352 0.16711178191711973 0.52244401220122 0.6802805702348451 2.4353619742838726 0.3722640960825496 0.16860050747227368 88.75431895850592 -1.9481894958590567 -0.6680193244115828 NDKSEEEQSSS(ph)SVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDKSEEEQSSSSVKK 15 2 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKSEEEQSS(0.001)S(0.92)S(0.079)VKK 163.35 8.051899999999998e-07 252840000.0 176970.0 74476.0 72440.0 64404.0 77290.0 130600.0 98890.0 112640.0 214910.0 90794.0 True False 176017.21318321524 76954.88863830727 82638.92234023265 72557.53979650901 87132.42336627883 121571.92939933167 94106.31290351451 121045.76877433031 161948.31014646075 84999.44918734576 2.0708041624512044 0.9053574978902791 0.9722289159555574 0.8536236468613607 1.0250939764825042 1.4302672612780956 1.1071402674162802 1.424077096164888 1.9052865835578932 1.0 16.375165871890854 1.618993653945753 4.920754454131488 1.5155120375597362 1.1655425388061702 0.06918585374039876 0.3917441052945739 0.31035606665179966 16.465884838061196 0.21098511967449518 0.09820517651822488 41.59045331153715 -1.618993653945753 -0.349969498753566 NDKSEEEQSSS(ph)SVKKDETNVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKSEEEQSS(0.049)S(0.547)S(0.378)VKKDET(0.027)NVK 170.97 5.3582e-12 1375600000.0 448170.0 144690.0 123550.0 136860.0 122250.0 278290.0 274170.0 235030.0 571530.0 213180.0 True False 445757.10251636826 149505.91918304787 140944.7660841488 154186.46196742804 137817.81286748082 259052.46732419555 260907.34966889012 252569.13205815761 430684.08960963594 199574.66988741962 2.2335354620294274 0.7491227181655087 0.706225725757963 0.7725753075498252 0.6905576391293748 1.2980227774913893 1.3073169546820163 1.265537015296742 2.1580097807631877 1.0 17.606569099186263 2.1208472160243335 1.5850548144785883 1.5070488930970538 0.9951097593689148 0.114060527449939 0.5101377751028128 0.7592337099199581 3.65167309943425 0.3028785285814422 0.16380033253091303 132.083088664001 -2.1208472160243335 -0.511939133728139 NDKSEEEQSSSS(ph)VKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDKSEEEQSSSSVKK 15 2 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKSEEEQSS(0.005)S(0.106)S(0.888)VKK;NDKSEEEQSS(0.096)S(0.153)S(0.751)VKK 158.58 9.4692e-07 403800000.0 631820.0 248412.0 204340.0 188105.0 223565.0 436430.0 325350.0 340930.0 655850.0 317380.0 True False 628418.3513218006 256680.2432517751 233109.2958448805 211919.07371315986 252034.67757642816 406260.62134571467 309611.57754230424 366371.9278074619 494224.5554397486 297124.5366773113 2.1149998527529457 0.8638810046527384 0.7845508097436132 0.7132331650661088 0.8482459254119008 1.3673075468248164 1.0420262863667646 1.233058474081378 1.6633582704631882 1.0 18.180708222932275 1.5544675667148664 4.639768266331937 1.3652036524197286 1.0700991877174115 0.04066716936199444 0.41306685830529866 0.4270128744325096 20.15749089390768 0.2410513373869545 0.10577468223119398 35.848217568500715 -1.5544675667148664 -0.2951044647023171 NDKSEEEQSSSS(ph)VKKDETNVK ddPTM_BT-474_Trastuzumab_2h_R1 3 NDKSEEEQSSSSVKKDETNVK 21 3 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKSEEEQS(0.011)S(0.062)S(0.181)S(0.746)VKKDETNVK;NDKSEEEQS(0.002)S(0.018)S(0.186)S(0.794)VKKDETNVK;NDKSEEEQSS(0.058)S(0.147)S(0.795)VKKDETNVK 254.11 1.2258e-35 3496990000.0 2650310.0 1027270.0 805000.0 831780.0 1000820.0 1960790.0 1649000.0 1614320.0 3768460.0 1323160.0 True False 2636041.0254371255 1061462.0609521717 918337.0028145658 937083.2627156749 1128268.4946751087 1825245.2025031801 1569231.5702082661 1734788.75575086 2839773.5277768965 1238714.7959857318 2.1280451593697514 0.856905935403389 0.7413627461225092 0.7564963829869913 0.9108379897708954 1.473499152846322 1.2668223349665564 1.4004747189367086 2.2925160311152095 1.0 20.240412626228572 2.179462665947047 1.4012139445078218 1.5920469317834072 1.0490344561875276 0.1332726887736545 0.48859272079726185 0.76132534370905 2.8802799892378794 0.30044480421816705 0.1662935253792596 151.16897416176172 -2.179462665947047 -0.5430124755958796 NDKSEEEQSSSSVK ddPTM_BT-474_Trastuzumab_2h_R1 9 NDKSEEEQSSSSVK 14 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ;;;;;;;; 290.39 1.6928e-43 14065157000.0 7984691.0 4452919.0 4217756.0 3961690.0 5217279.0 7615590.0 6345146.0 6198368.0 10478984.0 6211575.0 False True 7941702.310838568 4601131.717068623 4811579.383407642 4463239.547798775 5881668.555414619 7089142.1884705685 6038207.047168405 6660921.6948349485 7896578.804391622 5815146.9655030845 1.3656924507584667 0.7912322327128952 0.8274218023983129 0.7675196472721731 1.0114393652140106 1.2190822055788348 1.0383584598959525 1.1454433971057332 1.3579328005355866 1.0 22.471384222539985 2.968264836681941 6.315814220828626 1.1477615234042764 0.9156980543184234 0.23497425655140658 0.18190852996301732 0.2573811597899891 33.23999730719876 0.05417388353237714 0.059256834805696774 929.5330516005902 -2.968264836681941 -0.23206346908585296 NDKSEEEQSSSSVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDKSEEEQSSSSVKK 15 2 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 109.83 0.00054525 653650000.0 179616.0 106404.0 105631.0 103859.0 130436.0 206527.0 155714.0 149479.0 322684.0 180880.0 False True 178648.9674132136 109945.59281742379 120502.9266388889 117007.5387510967 147046.2514452575 192250.27460226437 148181.5189347543 160633.88201898205 243162.8519440722 169336.08354084095 1.054996452484544 0.6492744518382983 0.7116198988376017 0.6909781796322017 0.8683692711588696 1.1353178282046243 0.8750734978408513 0.9486098807773591 1.4359777718930502 1.0 17.369529901885414 2.943512104435615 4.620245078373603 1.0469801696625065 0.7636837111187456 0.3968123823720454 0.17521880354077365 0.23390451663634482 10.374174873511857 0.05374633454802428 0.05868669804389412 878.0355589174346 -2.943512104435615 -0.28329645854376095 NDKYAGEEGMIEDMK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDKYAGEEGMIEDMK 15 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 0 65.23100000000001 0.059942 0.0 24820.0 32637.0 30064.0 41078.0 37985.0 34248.0 30933.0 29439.0 33547.0 45454.0 False True 24686.371877761227 33723.30281551688 34296.749879027484 46278.47058817775 42822.16459526589 31880.516371120255 29436.6526144647 31635.887668213007 25279.791356769463 42553.086804872735 0.5801311662996538 0.7924995657813299 0.8059756049260375 1.0875467342801186 1.006323343630205 0.7491939778025605 0.6917630382361338 0.7434451891417286 0.5940765583632039 1.0 15.376976168489033 -0.9398263863501441 8.873991361374815 0.9999973094215977 0.7914072858881457 0.15233520115115284 0.1522134129107402 1.1684311347870033e-09 0.0 0.15682417223557335 0.036963811880580344 0.11486126993750713 0.9398263863501441 -0.20859002353345202 NDLAVVDVR ddPTM_BT-474_Trastuzumab_2h_R1 5 NDLAVVDVR 9 0 P19338 P19338 NCL Nucleolin 0 ;;;; 161.17 0.0001506 4483080000.0 5539950.0 5938110.0 5549070.0 5935990.0 5813910.0 6583670.0 6655600.0 6301560.0 8355190.0 6242540.0 False True 5510123.524746303 6135756.401686705 6330330.822618913 6687485.725369241 6554276.976755622 6128556.389192163 6333643.201138954 6771814.405873302 6296165.378310032 5844135.75269262 0.9428466000653006 1.049899704821149 1.083193664641052 1.144307046989464 1.121513471643059 1.048667698447713 1.0837604513585775 1.158736670816256 1.0773475574055829 1.0 22.47855826003604 4.715699239156477 1.878142302112094 1.1000704094635068 0.8982725588194229 0.4929772122915024 0.04411486117766667 0.5855711411517914 2.2257035114277 0.011174402482175551 0.2038918123417259 51963.60097046677 -4.715699239156477 -0.20179785064408384 NDLSICGTLHSVDQYLNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDLSICGTLHSVDQYLNIK 19 0 Q9Y333 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 0 ; 235.24 3.7152e-24 709770000.0 668800.0 638450.0 537870.0 533460.0 543680.0 692060.0 704590.0 689580.0 915650.0 711470.0 False True 665199.255110666 659700.4222988245 613597.4207501498 600995.9813031137 612914.4253561705 644219.5211340081 670506.2899048158 741039.9612162891 690000.3265813919 666063.3754798878 0.998702645422293 0.9904469252997451 0.9212297858414191 0.9023105059186086 0.9202043648092431 0.9672045406638046 1.006670407934871 1.112566744391826 1.0359379482234072 1.0 19.34529992972222 2.1090186639734663 3.0974830405134415 1.0615656425717686 0.946244265310578 0.5554737471981771 0.039554760557413096 0.16828835024804972 3.1970259268914156 0.018101950280188628 0.0120266413898294 128.5341896822239 -2.1090186639734663 -0.11532137726119052 NDLSPTTVMSEGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDLSPTTVMSEGAR 14 0 P30043;M0R192;A0A2R8Y7Y9;M0QZL1 P30043 BLVRB Flavin reductase (NADPH) 0 ; 78.28699999999998 0.051877 333600000.0 573470.0 371670.0 323690.0 289380.0 318010.0 536910.0 483460.0 457030.0 840560.0 473390.0 False True 570382.501238507 384040.81127074023 369262.73843608366 326015.4783291999 358506.6885070553 499794.6754501922 460073.1928034498 491135.89935131586 633415.2509269431 443177.8449104301 1.2870284645068077 0.8665613944405504 0.8332157003712917 0.7356312642277737 0.8089454214019035 1.1277519424537228 1.038123178058313 1.1082140160922946 1.429257482523662 1.0 18.757526235253565 2.7240760713265204 22.910024096376524 1.1354311593769149 0.8905308496544649 0.30718880368799173 0.1751182708224919 328.4260451710298 519465.3966379948 0.05720441018772215 0.05421999078530846 529.7562282384005 -2.7240760713265204 -0.24490030972244992 NDLVEALKR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDLVEALKR 9 1 P47756-2;B1AK88 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 88.596 0.020327 995500000.0 1316950.0 1076730.0 999320.0 814390.0 972480.0 1303870.0 1117510.0 1042770.0 1715910.0 1136160.0 False True 1309859.6875269015 1112568.3071529702 1140015.5697548497 917491.6904987121 1096319.563659449 1213736.5358798334 1063451.7719972348 1120586.79247877 1293046.9725160014 1063649.2960844864 1.2314770407396183 1.0459916734289816 1.07179647836132 0.8625885372896774 1.030715262723558 1.1411059456795103 0.9998142958511055 1.0535303286561486 1.215670406849302 1.0 20.020591116589657 1.4351791335480562 24.99917695802765 1.1167570615890763 1.0478737093880441 0.03760571357586118 0.10165089764925987 151.36378064566938 90227.34032199014 0.05574493008663312 0.024892170412639882 27.238245729735937 -1.4351791335480562 -0.06888335220103214 NDNDSWDYTKPYLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDNDSWDYTKPYLGR 15 1 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5;Q8WVV9-3;Q8WVV9-2;H7BXH8 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 ; 122.1 0.0001012 1469210000.0 1996770.0 1791780.0 1633140.0 1591820.0 1548000.0 2105340.0 1833260.0 1755990.0 2573100.0 1852700.0 False True 1986019.6121820046 1851418.3141461166 1863071.91649265 1793344.2487870178 1745128.6242851543 1959802.8012372807 1744578.2100667115 1887030.890536545 1938993.9827735259 1734459.099823727 1.1450368661814185 1.067432673583526 1.0741515419314263 1.0339501513580085 1.006151499601525 1.129921600017236 1.0058341590435962 1.0879650553468363 1.1179243044535243 1.0 20.726054390244123 -0.21153085074079148 0.006465671714467905 2.7600779223476903e-06 2.0894097178190076 0.13700831396728896 0.047512117077794715 21682.976156769622 38.192536975888316 6333.616314397151 6008.604142016638 0.6144253835538402 0.21153085074079148 2.0894069577410854 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK ddPTM_BT-474_Trastuzumab_2h_R1 5 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 41 0 P68104;A0A087WVQ9;A0A087WV01 P68104 EEF1A1 Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 ;;;; 378.72 5.745999999999996e-177 12676780000.0 2405605.2 1993212.1 2025682.9 1931656.8 1935873.0 2522166.9 2592094.7 885091.3 3405395.5 2246639.7 False True 2392653.6888910625 2059554.9598263435 2310881.444768599 2176204.352822769 2182394.9517317647 2347815.438745259 2466705.176597649 951141.307208553 2566181.4089868446 2103257.2309009843 1.137594419616524 0.9792216232838435 1.0987155592845261 1.0346829293393351 1.0376262682795483 1.1162759382215517 1.1728024230022367 0.4522230059330913 1.2200986980025998 1.0 21.004193873531264 NDPYHPDHFNCANCGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDPYHPDHFNCANCGK 16 0 P48059;P48059-4;P48059-2;P48059-5;P48059-3;A0A0J9YXC7 P48059 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 0 ; 140.96 9.5433e-07 401240000.0 534620.0 475980.0 465400.0 448230.0 448200.0 562900.0 492200.0 172004.0 725450.0 414870.0 False True 531741.6653218662 491822.70656401356 530924.2746706823 504975.87204194296 505275.61331046885 523988.047924071 468390.40561340743 184839.81189861422 546672.5680319675 388392.64141192305 1.3690827493250817 1.2663028444001703 1.3669782021116936 1.3001684846710924 1.3009402327336619 1.3491194014881904 1.205971369361347 0.4759096650921768 1.4075255546671783 1.0 18.567156341777093 1.981118030007534 23.90525931893189 0.8874196588537645 1.3186357346084112 0.35018903147926717 0.21487880350460203 359.95907830994594 455720.5061374863 0.08233208667866734 0.05419856546054201 95.74542472393789 -1.981118030007534 0.4312160757546467 NDQDTWDYTNPNLSGQGDPGSNPNKR ddPTM_BT-474_Trastuzumab_2h_R1 8 NDQDTWDYTNPNLSGQGDPGSNPNKR 26 1 A0A3B3ITJ4;P14866;M0QXS5;P14866-2 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;;;;;; 282.86 9.399599999999996e-61 19950660000.0 3323421.0 2889033.0 2618130.0 2527510.0 2814004.0 3494824.0 3239424.0 3185215.0 4094139.0 3187576.0 False True 3305528.070602783 2985192.716947675 2986739.946806093 2847492.506848564 3172350.7294915514 3253235.042810795 3082720.6853185785 3422911.9174940423 3085193.3021019106 2984142.170658885 1.1076979183846785 1.000352042975405 1.0008705269382774 0.9542080584652073 1.0630695684284743 1.090174280165913 1.0330341213729533 1.1470337945521807 1.0338627068229507 1.0 21.508884839507992 3.0263402169744786 24.89213561111073 1.0741347223305078 1.0129928315778074 0.12959886110520302 0.052067299389217434 302.611648997744 285972.9024390352 0.01480477785900692 0.01769456677062892 1062.5275925644562 -3.0263402169744786 -0.06114189075270038 NDQEPPPEALDFS(ph)DDEKEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDQEPPPEALDFSDDEKEK 19 1 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 1 NDQEPPPEALDFS(1)DDEKEK;NDQEPPPEALDFS(1)DDEKEK 194.19 2.2101999999999995e-15 1455160000.0 1765290.0 944690.0 793770.0 711340.0 792410.0 1361140.0 1300030.0 1278360.0 2541680.0 1184580.0 True False 1755785.874782155 976133.4355728346 905525.9164274771 801395.5710646673 893318.7165179586 1267047.5955789143 1237142.582303125 1373757.7145805475 1915317.020767097 1108979.090230038 1.583245248039752 0.8802090536895092 0.8165401173070287 0.7226426342253506 0.8055325157958168 1.1425351539460387 1.1155688986403718 1.23875889697396 1.727099309302395 1.0 20.080800733105292 1.986154721211752 1.613708646558187 1.3596794943213166 0.9486818318884999 0.21608057091440325 0.28218177007866246 0.525021738703661 2.5484973238551816 0.18309103950766056 0.08824894476286284 96.86228751798976 -1.986154721211752 -0.41099766243281677 NDQWAWETLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDQWAWETLR 10 0 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 0 125.75 0.00093265 57303000.0 52916.0 59438.0 74809.0 59439.0 49369.0 57184.0 77294.0 58928.0 88904.0 63698.0 False True 52631.106135520284 61416.35789897025 85341.45694851538 66963.97130558208 55655.84951701149 53231.00467665678 73554.99392824604 63325.50659032089 66994.80045256605 59632.73910539854 0.8825874330960524 1.0299100598149489 1.4311175074094395 1.122939719190592 0.9333102982011601 0.8926473188255374 1.2334666331231314 1.0619251696353496 1.1234567027711968 1.0 15.863816985018847 -1.479063968688499 3.9012713540485326 0.9992137792109541 1.0846950084292923 0.020952958535778055 0.15788402221188244 0.0011067230688910292 0.00014778078094450898 0.15670125094335105 0.03659689938832242 0.033184557530669345 1.479063968688499 0.08548122921833823 NDRGDQVPNR ddPTM_BT-474_Trastuzumab_2h_R1 3 NDRGDQVPNR 10 1 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ;; 157.97 7.5012e-06 690019000.0 195216.0 210197.0 199981.0 218042.0 214864.0 212123.0 235962.0 203665.0 283896.0 206385.0 False True 194164.97874653654 217193.28007823037 228136.5865339875 245646.09484364997 242225.65680129564 197459.43629383165 224547.61659762435 218863.51648991462 213933.63481150087 193213.33260491176 1.004925364770612 1.1241112461030498 1.1807497104792857 1.2713723816666123 1.2536694726787085 1.0219762457987434 1.1621745433933683 1.1327557655529554 1.1072405404287424 1.0 17.559835124611148 2.7376217549061574 24.996927877896052 1.102644032743023 1.1711509891250824 0.1819433275815877 0.08264640378520384 187.9397413155084 5003776.856570245 0.0274606372934468 0.027288429244719272 546.539751389036 -2.7376217549061574 0.0685069563820595 NDRGPGGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDRGPGGPR 9 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 81.33800000000002 0.019668 22997000.0 16223.0 25019.0 21015.0 24660.0 23158.0 19357.0 23370.0 21255.0 30519.0 21613.0 False True 16135.657170544746 25851.742290695136 23973.729334345502 27781.95347155323 26107.03403178012 18018.896151476718 22239.503817930345 22841.15603070307 22998.00138364824 20233.63983617975 0.7974668572331012 1.2776614835492752 1.1848451157798163 1.373057625641648 1.2902786766569878 0.8905415089605948 1.0991351036190686 1.1288703473836093 1.1366220595923398 1.0 14.304468249680948 2.766733301160775 24.990707932709295 1.0686880193705948 1.2003051833860565 0.14241821804460364 0.15876353359831902 1485.546789499125 1317758.7518023835 0.04848738323711252 0.05142052461837037 584.4310766857344 -2.766733301160775 0.13161716401546175 NDS(ph)GEENVPLDLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 NDSGEENVPLDLTR 14 0 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 NDS(1)GEENVPLDLTR;NDS(1)GEENVPLDLTR;NDS(1)GEENVPLDLTR;NDS(1)GEENVPLDLTR 263.07 1.4175e-24 810090000.0 929180.0 816060.0 728020.0 761240.0 734270.0 950130.0 933280.0 834590.0 1052110.0 890010.0 True False 924177.3981216032 843222.0637813132 830518.8879367211 857612.9059483039 827774.9321407357 884449.7494654431 888133.6809241772 896871.3437621492 792831.5880517102 833208.7998241037 1.1091786336350546 1.0120177126781706 0.9967716232858432 1.0292893043488642 0.9934783841883149 1.0614983298930072 1.0659197083752219 1.0764064709247971 0.9515401040160432 1.0 19.668318550727943 -0.18158000463324606 0.003381763655753375 3.0156617328336874e-08 2.0443405141412394 0.07478567657217328 0.043573767925116226 147196.44072286668 136.329599328725 41770.52610141265 40643.39908871269 0.6582941494861286 0.18158000463324606 2.044340483984622 NDS(ph)PTQIPVSSDVCR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDSPTQIPVSSDVCR 15 0 Q8TC07-2;Q8TC07-3;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 NDS(1)PTQIPVSSDVCR;NDS(0.999)PT(0.001)QIPVSSDVCR 322.82 9.118999999999998e-57 1310390000.0 869460.0 767640.0 708100.0 672010.0 722790.0 862050.0 814820.0 697530.0 1110040.0 893430.0 True False 864778.923966088 793190.4333518216 807794.3250844657 757086.3970972633 814833.0221880277 802458.5125474248 775404.0436853227 749583.2305855717 836485.5157739404 836410.5324960934 1.0339168271654053 0.9483266918993829 0.9657868877783872 0.9051612428144541 0.9742022494101407 0.9594074696221891 0.9270615487962478 0.8961905684623511 1.0000896488924202 1.0 19.67385170360989 4.744535726505946 4.80388567723377 0.9457249658271322 1.039194763567274 0.31657256256553 0.034281780075598026 0.2025963008536748 13.351748413479964 0.008086879667415524 0.06351950916604618 55531.0296909315 -4.744535726505946 0.09346979774014186 NDS(ph)WGSFDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 NDS(1)WGSFDLR;NDS(0.997)WGS(0.003)FDLR;NDS(0.996)WGS(0.004)FDLR;NDS(0.996)WGS(0.004)FDLR;NDS(0.984)WGS(0.016)FDLR;NDS(0.999)WGS(0.001)FDLR 226.51 3.1418e-09 3740980000.0 2770700.0 2405510.0 2246180.0 2504810.0 2268970.0 2721760.0 2658600.0 2638670.0 3746090.0 2735250.0 True False 2755782.859053709 2485575.946188497 2562422.6198534444 2821918.689176044 2557909.8802611683 2533611.137533878 2529993.3611617316 2835580.954294766 2822916.3145342525 2560684.0032346603 1.0761901334067772 0.9706687521961762 1.0006789657047055 1.1020175412551458 0.9989166476730484 0.9894274866923901 0.9880146702856892 1.1073529380090847 1.102407134565741 1.0 21.28809779996588 1.738508340833674 17.272328070680054 1.0785016176863242 1.016902252885399 0.19356749426855457 0.047581327535537475 0.07348523077389166 475.56758864835564 0.0216536796001028 0.01197836361786503 54.765661886873964 -1.738508340833674 -0.061599364800925205 NDSDPTYGQQGHPNTWK ddPTM_BT-474_Trastuzumab_2h_R1 3 NDSDPTYGQQGHPNTWK 17 0 Q93052;A0A087WZF1;C9JUT4;C9JXK9 Q93052 LPP Lipoma-preferred partner 0 ;; 255.19 4.6448999999999995e-27 1894090000.0 2320000.0 2074490.0 2036700.0 1958160.0 1986940.0 2692840.0 2597040.0 2320890.0 3273490.0 2564270.0 False True 2307509.3777762344 2143538.145594313 2323449.656686244 2206062.855225332 2239965.0314839426 2506690.309063524 2471411.25354377 2494086.597040625 2466782.252018698 2400616.0932180015 0.9612154914295528 0.8929116786520087 0.9678555697640447 0.9189569550323755 0.9330792365393553 1.0441862470826524 1.0294904131176044 1.038936048161423 1.0275621574760008 1.0 21.194973275393586 2.7430663754484415 24.986699626151765 1.031227797929417 0.9334322733024621 0.8116872617266313 0.02242190564881285 137.33430912560868 761589.1670764082 0.006371585710023342 0.006550130451754189 553.4346870081054 -2.7430663754484415 -0.09779552462695495 NDSVIVADQTPT(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDSVIVADQTPTPTR 15 0 B8ZZU6;E9PBF9;P15336-5;P15336;E9PEK8;H7C2N6;P15336-3;P15336-7 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 NDSVIVADQTPT(1)PTR 242.95 6.656999999999999e-17 323990000.0 215530.0 205520.0 197810.0 189750.0 203790.0 283090.0 260940.0 223040.0 326000.0 264360.0 True False 214369.6104276343 212360.60896053666 225659.92860465785 213772.33054449395 229741.4485420361 263520.65462218056 248317.335312398 239684.37737417148 245661.66817619582 247488.318470017 0.8661807221968135 0.8580631614185216 0.9118003225352083 0.8637673562374311 0.928292090561313 1.0647801732674744 1.0033497210999938 0.9684674365881598 0.992619246414887 1.0 17.917000905555923 2.977989948813317 5.261652032756408 1.0009118790913485 0.8779283876216877 0.8424958085946926 0.02672325831573456 0.07464648730010177 6.066308236947112 0.008582004423816476 0.009565697136015745 950.5827933867034 -2.977989948813317 -0.12298349146966081 NDSWGSFDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 0 ;;; 125.74 0.00093327 978840000.0 846580.0 908860.0 837090.0 833860.0 827320.0 871240.0 920060.0 877920.0 1213320.0 928760.0 False True 842022.1073438801 939110.8556825292 954944.9958832857 939426.5905024089 932674.2980901765 811013.2294783586 875553.1828294815 943434.8483874305 914313.5436550363 869485.7416485583 0.9684139336746262 1.0800761998718467 1.0982871255285858 1.0804393281035773 1.0726734820536699 0.9327504645914781 1.0069781951448902 1.0850492460044987 1.0515566844391073 1.0 19.72980284397951 NDSYTLHK ddPTM_BT-474_Trastuzumab_2h_R1 4 NDSYTLHK 8 0 P62195-2;P62195;J3QSA9;J3KRP2;J3QQM1;J3QLH6;J3QRW1;J3QSE0 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ;;; 113.62 0.0028132 2366290000.0 2510630.0 2489610.0 2286790.0 2232290.0 2271350.0 2980010.0 2953030.0 2667280.0 4260510.0 2830460.0 False True 2497113.0470372173 2572475.163848977 2608750.154864997 2514897.6851181514 2560592.9591538007 2774008.9228889886 2810180.6572299027 2866325.977773405 3210564.398409097 2649817.619521275 0.9423716668803621 0.9708121588812324 0.9845017768944803 0.9490833129762724 0.9663279994403562 1.0468678683592383 1.0605185189075765 1.0817068905637532 1.2116171221584406 1.0 21.337461635238903 2.4339195844909733 1.4257671595451167 1.1028338064735932 0.9611077650503161 0.5901661300076932 0.04995271939203656 0.2732827461697971 1.1220513315695764 0.024554460172449045 0.017595132514505722 271.5936329858796 -2.4339195844909733 -0.14172604142327705 NDTKEDVFVHQTAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDTKEDVFVHQTAIK 15 1 P67809;P16989;P16989-3;P16989-2;Q9Y2T7 P67809;P16989;P16989-2;Q9Y2T7 YBX1;YBX3;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3;Y-box-binding protein 2 0 ; 238.22 5.533e-18 3358600000.0 2407290.0 2014610.0 2127430.0 2077750.0 2121590.0 2827520.0 2809390.0 2779950.0 4171300.0 2701610.0 False True 2394329.418115063 2081665.0759925367 2426953.6520469515 2340792.93696349 2391761.9108508686 2632060.1976661403 2673489.0727879913 2987403.9853000687 3143339.007556334 2529190.9368353146 0.9466780001635626 0.823055723344181 0.9595770792551198 0.9255105665895039 0.9456628505254704 1.040672793553318 1.0570530812249517 1.181169812761586 1.242823925144015 1.0 21.270244524169275 2.4486934629885933 1.2558594479514997 1.1558929203638835 0.9077081812009998 0.6588103302876597 0.06898726243092561 0.24184578056839923 0.7677875176716219 0.03662539944882428 0.02581993215042913 280.99168135860117 -2.4486934629885933 -0.24818473916288364 NDTKEDVFVHQTAIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDTKEDVFVHQTAIKK 16 2 P67809;P16989;P16989-3;P16989-2 P67809;P16989;P16989-2 YBX1;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3 0 164.62 4.3923e-09 927200000.0 473500.0 479360.0 480710.0 556600.0 548500.0 711390.0 786700.0 692570.0 1262700.0 832730.0 False True 470950.7286107955 495315.2078207609 548389.7895937773 627065.5029305163 618348.223785793 662213.283731933 748644.3155141557 744253.0901992016 951524.5043131367 779584.4584639797 0.6041048195582462 0.6353579813490429 0.7034385865955733 0.804358650461077 0.7931766944201639 0.849443926879579 0.9603120064620252 0.9546792295803438 1.2205534550905897 1.0 19.57234580423164 2.8236317329817733 0.5263639435794991 1.0896064197607862 0.5917883165343758 0.8431783803874355 0.07041802485012358 0.36990542209827054 0.2146595772923722 0.059273625316026424 0.08016477778656701 666.2415793119497 -2.8236317329817733 -0.4978181032264104 NDVDVQIDQESYLPEDIAGGVEIYNGDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDVDVQIDQESYLPEDIAGGVEIYNGDRK 29 1 P36543;C9J8H1;P36543-3;P36543-2 P36543 ATP6V1E1 V-type proton ATPase subunit E 1 0 80.722 3.7646e-06 0.0 28973.0 45592.0 38788.0 52327.0 48425.0 32172.0 44161.0 28559.0 18809.0 39654.0 False True 28817.012587202917 47109.50215905398 44249.013248660165 58951.59283479181 54591.63671253785 29948.02536474191 42024.763718597445 30690.217599663556 14173.77397768732 37123.24777050257 0.7762524649069193 1.2690027136172688 1.1919488704816283 1.5879966429454924 1.470551204194891 0.8067188935052726 1.1320335973403042 0.826711547152117 0.38180317803307967 1.0 15.180035311389718 2.014632711152694 1.339799241431738 0.7053324744188106 1.2464367328674077 0.35812945972904986 0.2744850004723927 0.46280053935665144 1.546447077760946 0.19508982920584095 0.09264785695731534 103.42671027175265 -2.014632711152694 0.5411042584485971 NDVLDSLGISPDLLPEDFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NDVLDSLGISPDLLPEDFVR 20 0 Q9UBE0;M0QZS6 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ; 171.56 1.7786999999999998e-11 23933000.0 21475.0 24744.0 19546.2 21968.0 21410.0 24454.0 24125.0 23069.0 27119.0 23114.1 False True 21359.3809860968 25567.58908193615 22298.135061383968 24749.146547570206 24136.436592987822 22763.552538524153 22957.981583550263 24790.525922008426 20435.88582598238 21638.938349023396 0.9870808189192325 1.181554689492891 1.030463449811082 1.1437320144075913 1.1154168565796179 1.0519717821346588 1.0609569292749705 1.145644278945287 0.944403348092384 1.0 14.401342098854142 1.2313958193316998 24.999997084022368 0.9722016228443823 1.0932344721986453 0.3987844874098816 0.05752223162846755 159.04574858139412 554931.7328290603 0.04643531777969499 0.012562410603540526 17.03710575929389 -1.2313958193316998 0.12103284935426306 NDVVFS(ph)MDQTESLFKPHLMAMNSIFDSSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NDVVFSMDQTESLFKPHLMAMNSIFDSSGK 30 1 Q99814 Q99814 EPAS1 Endothelial PAS domain-containing protein 1 1 NDVVFS(0.235)MDQT(0.235)ES(0.235)LFKPHLMAMNS(0.146)IFDS(0.146)S(0.003)GK 45.67100000000001 0.08187699999999999 177570000.0 83118.0 80838.0 73395.0 69839.0 73855.0 113870.0 107080.0 90619.0 146390.0 107160.0 True False 82670.50192327787 83528.64396239702 83728.37803922378 78680.61023924605 83259.99647711898 105998.43492114765 101900.1313146761 97381.44993395828 110314.1460255011 100320.95705570823 0.8240601400699451 0.8326141059042486 0.8346050565758599 0.7842888719208958 0.829936225896297 1.0565931389817853 1.0157412200333271 0.9706989724976642 1.0996121773862628 1.0 16.614263490976263 2.746804002173849 24.0866126408604 1.0210164336694987 0.8204456033533851 0.8978671023260383 0.03493331972013628 112.03754228399757 327365.83668078226 0.010796719604504176 0.011263427667206607 558.2182130679138 -2.746804002173849 -0.20057083031611356 NDWLDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NDWLDLR 7 0 E9PS41;Q6RFH5-2;Q6RFH5 E9PS41 WDR74 WD repeat-containing protein 74 0 83.265 0.085838 0.0 185050.0 223230.0 226230.0 233340.0 249370.0 237780.0 228770.0 226650.0 261110.0 218280.0 False True 184053.7113609876 230660.07560461562 258081.21757358912 262880.82007511065 281125.7913682101 221342.82827391342 217703.52111373268 243563.77390537984 196762.93919474407 204349.18352109005 0.9006823917257891 1.1287545740588198 1.2629422497641327 1.2864295102406407 1.375712819225413 1.0831598368048754 1.0653505796428318 1.1918999122413554 0.962876072242476 1.0 17.640676953506528 2.564153119786364 24.99999997629567 1.0825602493844988 1.200028447184527 0.18858493208974425 0.13052516170429232 149.39293512696543 42909.872821545876 0.04440269917984337 0.04186325591308986 366.5667928116179 -2.564153119786364 0.11746819780002826 NDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENK ddPTM_BT-474_Trastuzumab_2h_R1 2 NDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENK 38 0 P27694;I3L4R8 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 ; 228.1 5.7377000000000005e-40 97603000.0 42417.0 34950.0 30881.0 29007.0 32853.0 43900.0 40671.0 25424.8 56169.0 34648.0 False True 42188.63158497176 36113.28962227885 35228.77637753622 32679.283225845273 37036.63481501303 40865.29632948436 38703.58835169216 27322.12768051844 42326.90257603911 32436.734976354794 1.3006435948539747 1.1133453983147235 1.0860765241389654 1.0074775790370791 1.1418114320695778 1.2598461700684018 1.1932023485071994 0.8423205264165854 1.3049063849026077 1.0 14.98534098731409 NECDPALALLSDYVLHNSNTMR ddPTM_BT-474_Trastuzumab_2h_R1 1 NECDPALALLSDYVLHNSNTMR 22 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 199.85 1.7178000000000002e-22 59399000.0 31580.0 54908.0 64205.0 73576.0 67397.0 73748.0 79326.0 75828.0 62205.0 74741.0 False True 31409.97678886784 56735.5795874131 73244.50592013566 82890.71405608267 75979.60845668383 68649.97434411872 75488.6983252522 81486.67040678202 46875.41125429528 69970.96539101058 0.4489001489881286 0.8108446020483536 1.0467842698872587 1.1846444249107349 1.0858733766512416 0.9811208686415869 1.0788574647127922 1.164578335477002 0.6699266044472431 1.0 16.094468776235924 4.609468062765085 2.233638011834506 1.047593391131862 0.38029795120595045 0.6268312516250858 0.13629898180684707 0.27613325099274444 1.9544314872103117 0.033706137041349254 0.3251786098042247 40688.16113672581 -4.609468062765085 -0.6672954399259116 NEDAQYS(ph)FIR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEDAQYSFIR 10 0 C4B7M2;Q96JI7-2;Q96JI7-3;Q96JI7 C4B7M2 SPG11 Spatacsin 1 NEDAQY(0.441)S(0.559)FIR 58.37 0.07184600000000001 1543200000.0 1612900.0 1624400.0 1506400.0 1497000.0 1290600.0 1664900.0 1621100.0 1460700.0 1713200.0 1669900.0 True False 1604216.3256100381 1678467.172029464 1718488.0261364756 1686520.0465091313 1454950.260014483 1549809.3817530395 1542681.1997966154 1569704.851284307 1291004.8157038619 1563325.5523266834 1.0261562751421145 1.0736517224652384 1.0992515433390475 1.0788028405210282 0.9306764402648531 0.9913542188614982 0.9867945915044098 1.0040805953360958 0.8258067641653212 1.0 20.576186810758823 3.2470487763422424 24.99623047856458 0.9635402455762508 1.0718921969108428 0.5269210599334033 0.052181343105653234 153.095074351253 450837.0773134548 0.014355759624559577 0.019131883633477696 1766.2361784969085 -3.2470487763422424 0.10835195133459197 NEDEDS(ph)PNKLYTLVTYVPVTTFK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEDEDSPNKLYTLVTYVPVTTFK 23 1 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 1 NEDEDS(0.999)PNKLYT(0.001)LVTYVPVTTFK 123.28 3.7728e-05 124940000.0 393830.0 235810.0 216560.0 195800.0 201990.0 339580.0 343820.0 313990.0 531320.0 336420.0 True False 391709.6630386264 243658.79329984458 247049.76562673604 220588.2599241738 227712.22921147206 316105.6338853369 327188.1130800523 337421.5282089134 400383.3053232402 314949.3875763476 1.2437225741347762 0.773644283530409 0.7844110049804371 0.700392725388934 0.7230121352633899 1.0036712130729546 1.0388593405368596 1.0713515933639282 1.2712623714062068 1.0 18.264760480321357 2.4833401066473697 3.158327618113718 1.0953450509461757 0.8302396078969864 0.35556144348750696 0.15825276558925538 0.27288016045279606 5.634335172769731 0.057652321441965255 0.049871269044424724 304.32673499366916 -2.4833401066473697 -0.26510544304918937 NEDEEEEEEEKDEAEDLLGR ddPTM_BT-474_Trastuzumab_2h_R1 5 NEDEEEEEEEKDEAEDLLGR 20 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ;;;; 334.18 5.553799999999998e-80 7941910000.0 4101370.0 2907630.0 2486970.0 2243450.0 2401600.0 3607300.0 3544530.0 3472210.0 6002950.0 3404790.0 False True 4079288.679625041 3004408.7068505515 2837113.7588692484 2527470.5399738895 2707429.524601567 3357935.8416708205 3373067.542480472 3731323.9417251227 4523603.407908877 3187493.387212624 1.2797794956971715 0.9425615497442099 0.8900767512964873 0.792933579129428 0.8493914169243628 1.0534722535086556 1.0582194636112259 1.1706138612535488 1.419172640814369 1.0 21.60399091827749 2.00305025604923 1.7550206710423175 1.219350885891269 0.9446709541696677 0.2992748829924321 0.15648677128515368 0.41092099577114144 2.3633573335398577 0.09727049661020315 0.0486764018342508 100.70481965482958 -2.00305025604923 -0.2746799317216012 NEDEMMVAIFEYIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEDEMMVAIFEYIDR 15 0 Q9H0D6 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 77.77600000000002 0.057889 131750000.0 116910.0 100520.0 128070.0 116270.0 113870.0 145510.0 158190.0 136730.0 171230.0 170120.0 False True 116280.56954992199 103865.74743437688 146101.14279560454 130989.77007856844 128370.66953963213 135451.23619369618 150537.74535551568 146933.48690087194 129032.66086444793 159262.7959529402 0.7301175949735377 0.6521657918467516 0.9173588967932929 0.8224756403075705 0.8060304904954937 0.8504888752155275 0.9452160151702809 0.9225851274411169 0.8101870879032863 1.0 17.281049764759647 7.1013619377472805 0.20723263540032485 0.9686487148818893 2.7090117927326377e-15 0.5312006349560205 0.068115450959306 27.189199039119625 0.46328616229068686 0.1185590781041462 8.017365265255771 12628795.704641791 -7.1013619377472805 -0.9686487148818866 NEDTTFDKEFLLELLVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NEDTTFDKEFLLELLVSR 18 1 O60306;H0YH15 O60306 AQR Intron-binding protein aquarius 0 ; 136.04 6.498200000000002e-06 258340000.0 474100.0 479580.0 472100.0 489230.0 431450.0 535260.0 555570.0 566640.0 665170.0 583560.0 False True 471547.49827746145 495542.5303877684 538567.5764332388 551166.4678381176 486392.6000954971 498258.73606651014 528694.9566164991 608925.5541396181 501247.76632135076 546316.7011891475 0.8631394523562272 0.9070609214566188 0.9858156912665464 1.0088772073751613 0.8903125220898137 0.9120327732649737 0.9677444520105429 1.1146017553814338 0.9175040141191055 1.0 19.059378002093737 1.9899903653313016 22.844082720077328 1.0278698801582673 0.9322316105484697 0.25894637470041815 0.06066141024071204 174.09667699133138 397324.693210188 0.02400352342477731 0.016666670238374162 97.72155415359272 -1.9899903653313016 -0.0956382696097976 NEDVQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NEDVQLR 7 0 P30153;P30154-4;P30154;P30154-2;P30154-5;E9PPI5;E9PHZ6 P30153 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 ; 121.74 0.010256 810180000.0 1114450.0 1247830.0 1158500.0 1180330.0 1130760.0 1297160.0 1341680.0 1052690.0 1527710.0 1261950.0 False True 1108449.925027036 1289363.2672208364 1321606.7301374848 1329759.6569780372 1274755.5834603882 1207490.3823861924 1276777.8126846724 1131247.0732515089 1151226.3407652031 1181411.2705902494 0.9382422130383429 1.0913754585874678 1.118667785755245 1.1255687922408857 1.0790108535391767 1.0220745412246774 1.0807225599318826 0.957538751671399 0.9744501084622584 1.0 20.172079849684298 1.7427968037652375 8.306790267450308 0.9756278349268059 1.0693882825806804 0.3748342850667544 0.05165930081030548 0.11601748469125445 29.049103862649783 0.025340177898151538 0.01357944728553839 55.309127019342775 -1.7427968037652375 0.09376044765387448 NEEDAAELVALAQAVNAR ddPTM_BT-474_Trastuzumab_2h_R1 3 NEEDAAELVALAQAVNAR 18 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 264.31 1.3708000000000001e-30 276848000.0 310807.0 358067.0 313259.0 307866.0 282480.0 356182.0 365476.0 310303.0 422688.0 347263.0 False True 309133.64964590373 369985.04363892763 357363.1443039607 346841.80403378804 318452.1536098646 331559.97670224146 347796.52962609805 333459.3855467071 318522.20612901775 325100.3780331876 0.9508867738515705 1.1380640215716944 1.0992393994309033 1.0668760403544686 0.979550240871623 1.019869551392507 1.069812750542522 1.025712081800982 0.9797657205323265 1.0 18.310525708060553 3.367073054620351 8.894137284796937 1.018835830875524 1.0723464733446129 0.18335836009950246 0.050861126222613906 0.42773321729871144 32.04140851865775 0.013807514074687775 0.01870204729385218 2328.4829092646414 -3.367073054620351 0.053510642469088765 NEEDDMVEMEEER ddPTM_BT-474_Trastuzumab_2h_R1 1 NEEDDMVEMEEER 13 0 P80303-2;P80303;E9PKG6;Q2L696;H0YEG8 P80303-2 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 0 331.57 4.430099999999998e-62 468750000.0 393690.0 402600.0 323200.0 314740.0 316780.0 387760.0 377450.0 355450.0 466150.0 345570.0 False True 391570.4167830714 416000.2976231602 368703.7506952397 354586.05172898096 357120.0552978367 360955.06388885726 359191.30150097585 381975.4839385278 351273.5785899806 323515.426742638 1.2103608805479693 1.2858746855187697 1.139679039134507 1.0960406287242066 1.1038733419718243 1.1157275173032262 1.110275652439655 1.1807025333675842 1.0858016327902182 1.0 18.303474982804378 7.999999999999999 0.3182768016749783 1.0895495252528258 2.701610895203348 0.5038770810843676 0.05205644875940625 51.5125133785169 0.7377868326564648 0.050608754000155604 48.23600982974389 99999999.99999979 -7.999999999999999 1.6120613699505222 NEEDEGHS(ph)NSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 NEEDEGHS(1)NS(0.002)S(0.998)PR;NEEDEGHS(1)NS(0.001)S(1)PR 232.56 7.9397e-13 212750000.0 575130.0 545780.0 431210.0 477710.0 491630.0 561260.0 526270.0 486040.0 624330.0 499060.0 True False 572033.5639829499 563945.9573690228 491920.61985548964 538188.0370192908 554236.1663806913 522461.41726392705 500812.30955336854 522310.77286111057 470472.23709338775 467209.56353323755 1.2243618466561101 1.2070513991713343 1.0528907330906854 1.151919992710089 1.186268881547119 1.1182592524708859 1.0719222135908621 1.1179368181403955 1.006983319295685 1.0 18.833710280163224 7.999999999049839 0.07743746041499176 0.8673479644952635 1.7607039076198554 0.6088163911549078 0.04742087868065453 147.12074333388776 0.8325991484471775 1.5023481410775938 14.116919731994784 99999999.78121738 -7.999999999049839 0.8933559431245919 NEEDEGHSNS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 3 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 NEEDEGHS(0.021)NS(0.49)S(0.49)PR;NEEDEGHS(0.018)NS(0.491)S(0.491)PR;NEEDEGHSNS(0.665)S(0.335)PR 158.17 3.074e-05 580560000.0 1231219.0 1152929.0 1064924.0 1066018.0 1102013.0 1099991.0 1158756.0 1098120.0 1375470.0 1160830.0 True False 1224590.2537052901 1191303.5448047027 1214856.0427146575 1200975.769498711 1242347.8234072062 1023951.2112702912 1102702.5454022137 1180067.2905403743 1036503.8488537191 1086744.8355634375 1.126842487427497 1.0962127500583476 1.1178852688863241 1.105112930098305 1.1431826338177113 0.9422186126510644 1.0146839527702955 1.0858733825300881 0.9537692887367895 1.0 20.051581808970795 2.7540128608322774 24.967464829173135 1.0125747249948855 1.1159399566918637 0.6908945579420602 0.03913378786183748 540.0342956125296 872577.0294156731 0.012560465795748701 0.013275474296973951 567.5614124469968 -2.7540128608322774 0.1033652316969782 NEEDEGHSNSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 10 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 NEEDEGHSNS(0.071)S(0.929)PR;NEEDEGHS(0.032)NS(0.351)S(0.617)PR;NEEDEGHSNS(0.045)S(0.955)PR;NEEDEGHSNS(0.302)S(0.698)PR;NEEDEGHSNS(0.021)S(0.979)PR;NEEDEGHSNS(0.172)S(0.828)PR;NEEDEGHSNS(0.043)S(0.957)PR;NEEDEGHSNS(0.178)S(0.822)PR;NEEDEGHSNS(0.019)S(0.981)PR;NEEDEGHSNS(0.31)S(0.69)PR 232.01 1.5433e-12 31436430000.0 16348280.0 15130270.0 13716980.0 13576640.0 14599340.0 14970350.0 15931670.0 14617960.0 17533520.0 14982610.0 True False 16260262.67694465 15633871.890508652 15648211.553872492 15295441.231955742 16458479.41193233 13935484.940913355 15160994.257210385 15708826.40369682 13212618.93313095 14026407.002542233 1.1592607197265514 1.11460275519419 1.1156250885231203 1.0904746475119038 1.1733924025553581 0.9935177938575147 1.0808893720581838 1.1199465694136534 0.9419817156835826 1.0 23.741642160448627 1.8997537603991577 0.3761691296259345 0.9856314788926117 1.1446146703711024 0.4476809795566794 0.05364038565101175 1.2429073465630804 0.4806566161137974 0.06569425076371144 0.06628312143714678 79.38779880918918 -1.8997537603991577 0.15898319147849072 NEEDEGHSNSS(ph)PRHS(ph)EAATAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 NEEDEGHSNSSPRHSEAATAQR 22 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 NEEDEGHSNS(0.447)S(0.553)PRHS(1)EAATAQR;NEEDEGHS(0.003)NS(0.463)S(0.534)PRHS(0.993)EAAT(0.007)AQR;NEEDEGHS(0.013)NS(0.448)S(0.539)PRHS(0.986)EAAT(0.014)AQR;NEEDEGHS(0.003)NS(0.464)S(0.532)PRHS(0.952)EAAT(0.048)AQR 173.95 4.2088e-12 354323000.0 362453.0 224709.0 220307.0 236283.0 235922.0 235715.0 223577.0 227032.0 312911.0 270328.0 True False 360501.5933203143 232188.30322554085 251324.3106572281 266196.40357335814 265965.268280751 219420.57686342625 212761.72636291885 243974.28068513647 235798.27684258192 253075.43560055527 1.4244827533926148 0.9174667729981432 0.99308062064905 1.0518460748340368 1.0509327689177252 0.867016493887425 0.8407047719113045 0.9640377783255751 0.9317311902793958 1.0 17.949207955583077 4.741379949328287 24.986898679175404 0.9554257883396634 1.4244829233586411 0.8139206596562704 0.06699015805449712 114.51022770318298 1014816.1058394194 0.017353361974791908 0.12099841240618182 55128.97899967406 -4.741379949328287 0.4690571350189777 NEEDEGHSNSSPR ddPTM_BT-474_Trastuzumab_2h_R1 12 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ;;;;;;;;;;; 233.86 1.2022999999999998e-16 4659099000.0 5852679.0 6081388.0 5571087.0 5427443.0 5568231.0 6060846.0 6102481.0 5792305.0 6832781.0 5859290.0 False True 5821168.826557762 6283803.323303317 6355447.624843716 6114556.727311737 6277312.212359141 5641873.98171685 5807280.680288717 6224556.211828818 5148933.677124584 5485345.095809454 1.0612219878389897 1.1455620774167603 1.1586231155627709 1.1147077568525217 1.1443787223441442 1.0285358319619629 1.0586901241136508 1.1347610958122007 0.938670874337173 1.0 22.387150956106076 1.5060850404399162 0.6673792747314286 0.9859651684634336 1.1238330610352785 0.4390195098510944 0.05223349401059061 0.6576114867833137 0.647044158895068 0.05001411477619767 0.023558224835810174 32.06897214709847 -1.5060850404399162 0.13786789257184484 NEEPS(ph)EEEIDAPKPK ddPTM_BT-474_Trastuzumab_2h_R1 6 NEEPSEEEIDAPKPK 15 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK 202.53 3.5508e-09 9191920000.0 8915490.0 5728370.0 5604840.0 4704550.0 4755440.0 8163560.0 7808220.0 7918310.0 13592190.0 7554170.0 True False 8867489.992444048 5919035.332577213 6393952.753857381 5300145.547631618 5361017.096298834 7599232.3121532 7430506.568302959 8509214.500563454 10242576.900514746 7072056.403149673 1.253877159194424 0.8369609905742634 0.9041150677205734 0.7494489926962543 0.7580563262916292 1.0745435102537841 1.0506854222759938 1.2032164359964261 1.4483166304998674 1.0 22.753698350306323 2.1254410521644336 1.690527327273836 1.2350681273739443 0.895746727672683 0.3676181004470823 0.1713253519528621 0.36442063596061236 2.0048171400442425 0.0978687281532843 0.05418435757864914 133.48763912791875 -2.1254410521644336 -0.3393213997012613 NEEPSEEEIDAPKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEEPSEEEIDAPKPK 15 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 118.33 0.00027296 182750000.0 150760.0 108970.0 97624.0 71049.0 96193.0 154820.0 127540.0 124440.0 249300.0 131870.0 False True 149948.32491101057 112597.00057624393 111368.61063698036 80043.79611518193 108442.60836941993 144117.6578070791 121370.4029498862 133726.34469351626 187863.35544885154 123453.94370041303 1.2146094358467132 0.9120567330719239 0.9021065451520911 0.648369697361998 0.8784053803301638 1.167379943380431 0.9831229308025754 1.083208366498452 1.5217282641431165 1.0 16.913613398128135 1.9533044476019632 1.2359776582832889 1.2275839055684348 0.9154507381174772 0.2665140170595267 0.19142050653911258 0.6039478012763134 1.7055388697425196 0.1458647744030597 0.06558288623620975 89.80581274627595 -1.9533044476019632 -0.31213316745095754 NEEPVRS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 NEEPVRSPER 10 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 NEEPVRS(1)PER;NEEPVRS(1)PER 136.6 6.860899999999999e-05 1791340000.0 1047820.0 947760.0 885570.0 834970.0 791700.0 931360.0 938570.0 857000.0 1088460.0 915310.0 True False 1042178.6535437456 979305.6186669817 1010250.5584875738 940677.1163885964 892518.3022264587 866977.2753856155 893167.7834144147 920953.6917578231 820223.6176167561 856894.1321636842 1.216228019804748 1.1428548544196524 1.1789677634233062 1.0977751872490449 1.0415735955301997 1.0117670816539157 1.0423315435235136 1.0747578460274743 0.9572053149035646 1.0 19.70875744722601 3.5030325223849172 1.847669874905952 1.027365940141598 1.1806287842031131 0.8179353212253793 0.03347361404055334 0.14913406388124148 1.016462884261005 0.010221073044899501 0.017729334078034176 3184.435981065016 -3.5030325223849172 0.15326284406151514 NEEPVRS(ph)PERR ddPTM_BT-474_Trastuzumab_2h_R1 8 NEEPVRSPERR 11 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR 134.37 7.418899999999999e-05 7306713000.0 2561405.0 4166874.0 3988466.0 4914368.0 4481792.0 3199736.0 3580383.0 2893684.0 2924756.0 2979152.0 True False 2547614.6800788506 4305565.882161479 4550007.344432061 5536526.484918491 5052521.645537598 2978545.7816883596 3407186.1958987108 3109625.39390962 2203989.0735225114 2789019.968779649 0.9134444029074389 1.5437558462678929 1.631400060008513 1.9851153978438627 1.811576002357687 1.0679542688938288 1.2216428114674072 1.1149527176997065 0.7902378248252123 1.0 21.411326833111783 2.7233829211784486 24.006684051377896 1.0669004183113102 1.60089701281333 0.4802660868664129 0.2785802025827996 450.4567818273998 712489.6787129345 0.09474595447472618 0.08968879712051468 528.9113919665749 -2.7233829211784486 0.5339965945020198 NEEQKAEQEEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEEQKAEQEEGK 12 1 Q9H307 Q9H307 PNN Pinin 0 101.3 0.0025046 348270000.0 247650.0 192090.0 162680.0 181700.0 192950.0 268580.0 269750.0 242300.0 416910.0 258720.0 False True 246316.67991650171 198483.5995291428 185583.92996009174 204703.20136987916 217521.0387957499 250013.6967693145 256701.16195492988 260381.65637446995 314168.11680778454 242208.26809866403 1.0169623103706935 0.8194749134174483 0.7662163286865737 0.84515364804348 0.8980743741875163 1.032226103311514 1.0598364951371608 1.075032072267669 1.2970990597224679 1.0 17.885888588607546 2.5577216938588214 1.4167440452496332 1.122549184146554 0.8502460131223945 0.6051222986107839 0.09252699663256297 0.27153036176613005 1.1047616451169842 0.04364925288751371 0.035261110828537175 361.17833687200044 -2.5577216938588214 -0.2723031710241596 NEEVQFGQHLDAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEEVQFGQHLDAAR 14 0 Q9H6W3;Q9H6W3-2 Q9H6W3 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 0 151.8 3.4462e-07 0.0 68007.0 76712.0 72740.0 67462.0 79032.0 90739.0 70442.0 76258.0 100880.0 77324.0 False True 67640.85786828808 79265.31254661674 82981.15973258585 76002.68228296528 89096.25674063589 84466.42650663061 67034.45134542788 81948.7591902777 76019.47572274435 72389.11611959306 0.9344064618296976 1.0949893685076029 1.1463209413345208 1.0499186391142323 1.230796306359663 1.166838760223081 0.9260294218081235 1.1320591213586761 1.0501506275771293 1.0 16.143485180440035 0.9948412428238034 22.958641445647235 0.9999999898254643 1.088302466667821 0.07709245396703368 0.09126214248779918 160.99640330124262 716513.6704908743 0.08567544189226843 0.021418860455752507 9.8819179322894 -0.9948412428238034 0.08830247684235659 NEFNLESK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEFNLESK 8 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 130.66 0.0042528 0.0 130430.0 116040.0 122070.0 89960.0 125250.0 158940.0 133660.0 131720.0 184590.0 122680.0 False True 129727.7793721354 119902.32125233882 139256.39494853932 101348.92677619332 141199.84508508773 147952.8519045156 127194.35516921566 141549.61526060742 139100.2678792762 114850.45736836788 1.1295364628462075 1.0439864498559874 1.2125018753899481 0.8824425178484909 1.2294234461096452 1.2882217040718968 1.1074780029935478 1.232468886097732 1.2111424809840348 1.0 16.809397076400906 NEGNLENEGKPEDEVEPDDEGKS(ph)DEEEKPDVEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 NEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGK 34 3 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK;NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK;NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK 361.0 7.190699999999996e-132 1206600000.0 3136450.0 1157220.0 829710.0 731466.0 706548.0 1713880.0 1690620.0 1470660.0 3836950.0 1226731.0 True False 3119563.701692355 1195737.3681457373 946525.9560313957 824069.5206011016 796522.6997619031 1595403.5096395605 1608838.2518044244 1580408.1170601652 2891385.084995877 1148439.9773227524 2.7163489283651496 1.0411840337822833 0.8241840886085667 0.7175555857278458 0.6935692900718764 1.3891918960873961 1.40089014974466 1.3761347116672293 2.517663214525399 1.0 20.131244026230107 1.4478987749029175 6.600081967465308 1.8219657524709898 1.2114065837751935 0.08074594416982284 0.6472471253787734 0.3466528059009982 34.865266571997964 0.3915423651100794 0.1601749190815365 28.04779825361904 -1.4478987749029175 -0.6105591686957963 NEGS(ph)ESAPEGQAQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NEGS(0.999)ES(0.001)APEGQAQQR 226.74 8.649399999999999e-13 300790000.0 354860.0 279590.0 291320.0 247390.0 288330.0 339790.0 312970.0 314780.0 364360.0 307180.0 True False 352949.4731886521 288895.9841342762 332335.3238011672 278709.54863453214 325047.1164341977 316301.11707962374 297830.4454384966 338270.4820204522 274568.3601738612 287575.50940997066 1.2273279943511588 1.0045917495791448 1.1556454319876956 0.9691699728059975 1.1303018017810658 1.0998889221428851 1.0356599769207273 1.1762840400230683 0.9547696211586421 1.0 18.13358129222641 1.4313634220668017 0.011496889481924717 1.7214753353947277e-05 2.129471102378235 0.15570772870931826 0.08291487317001542 1737.0241855295135 19.776617345815463 1835.652301638542 1823.5339249165077 26.999978732206465 -1.4313634220668017 2.129453887624881 NEGSES(ph)APEGQAQQR ddPTM_BT-474_Trastuzumab_2h_R1 3 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NEGS(0.007)ES(0.993)APEGQAQQR;NEGSES(1)APEGQAQQR;NEGSES(1)APEGQAQQR 361.35 4.749899999999998e-83 2927853000.0 1014859.0 714027.0 683810.0 676797.0 715886.0 813282.0 728969.0 717775.0 941162.0 805519.0 True False 1009395.1119054356 737792.9570565633 780084.5042169299 762479.4308064407 807049.8387112411 757061.729599902 693705.9845379918 771339.0152875981 709225.2360246767 754110.0877804876 1.3385248762237196 0.9783624022694761 1.0344437991976618 1.0110983040295694 1.0702016214722267 1.00391407284857 0.9199001522174589 1.0228467007487183 0.9404797091523905 1.0 19.52441562326446 4.740789898368031 24.951144222244945 1.000010733034313 1.3385249966800785 0.8585049593931541 0.04147571668774697 68.26508618244259 764003.2207098035 0.00987469569420376 0.06603864205648269 55054.12928185143 -4.740789898368031 0.3385142636457654 NEHDKT(ph)PEHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEHDKTPEHSR 11 1 O75182-2;O75182;O75182-3;M0R271 O75182-2 SIN3B Paired amphipathic helix protein Sin3b 1 NEHDKT(1)PEHSR 89.506 0.017856999999999998 111710000.0 84378.0 61011.0 50549.0 46597.0 41738.0 58178.0 81132.0 42780.0 88743.0 71741.0 True False 83923.71822327714 63041.71425307171 57665.859820215584 52496.17542230198 47053.08689949211 54156.2917962811 77207.33520566222 45972.46083243835 66873.47674527661 67162.42795943978 1.2495634951428456 0.9386455518127393 0.8586029655604576 0.7816301020863193 0.7005864488387473 0.8063480347819878 1.1495614073435327 0.6844967078945045 0.995697725306511 1.0 16.035366765002003 4.744273741159702 2.472099878859186 0.8554535238175517 1.3412142327927694 0.3988473568550025 0.13719437878952503 0.50768339100363 3.8112722885451062 0.03309795494129438 0.5247609241371147 55497.54105720441 -4.744273741159702 0.4857607089752177 NEHFQK ddPTM_BT-474_Trastuzumab_2h_R1 3 NEHFQK 6 0 P15924 P15924 DSP Desmoplakin 0 ;; 121.29 0.019715 789540000.0 2076940.0 1790490.0 1714110.0 1704420.0 1680630.0 2172220.0 2324170.0 1631600.0 2724370.0 2034040.0 False True 2065757.9858097248 1850085.377275939 1955441.788688793 1920199.397241881 1894648.2686255574 2022059.544255866 2211741.017908396 1753358.2770969253 2052985.5181876756 1904225.8257707448 1.0848282582101831 0.9715682626702681 1.0268959501677373 1.0083884858901495 0.994970366951456 1.0618801178360384 1.1614909261159627 0.9207722389686869 1.0781208249587306 1.0 20.860773150071033 2.742151638863402 24.88556710832544 1.0394977389493694 1.0148225940534634 0.040532271105995665 0.06315367966327708 1212.0896152644368 8399718.24250476 0.019766638471413075 0.020195005813490055 552.2702370616616 -2.742151638863402 -0.024675144895905943 NEHKVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEHKVK 6 1 Q6UWY0 Q6UWY0 ARSK Arylsulfatase K 0 62.842 0.069524 22243000.0 123560.0 79989.0 60653.0 52851.0 51096.0 54121.0 72257.0 60444.0 111450.0 67910.0 False True 122894.76668880659 82651.38551062834 69192.41519467316 59541.93118106485 57602.77273028055 50379.74265713034 68761.65286145461 64954.63820841287 83984.64085348781 63575.92565932395 1.9330393606433165 1.3000421881943425 1.088343024141647 0.9365483956950066 0.906046937310029 0.7924342765702496 1.0815674667470632 1.0216860790431406 1.321013260640913 1.0 15.956192942117905 4.773033268113243 1.6691182877943929 1.002942147022944 2.319093010861308 0.8215705718249349 0.1297740144643661 0.4253438658734252 1.0787260784894277 0.03532254663635438 0.924221968350185 59297.07459776849 -4.773033268113243 1.3161508638383639 NEHRPASALVNPLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEHRPASALVNPLAR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 88.97399999999998 0.0039528 155930000.0 262210.0 284640.0 237650.0 252470.0 257980.0 309370.0 285270.0 200020.0 339010.0 236980.0 False True 260798.29049426952 294114.0703314867 271109.0543091701 284432.67611366796 290832.2238327419 287983.98007864656 271470.40026277275 214946.5080809799 255465.5280012642 221855.7335112146 1.175530991995239 1.3256996593086448 1.222006075833356 1.2820614171744638 1.3109069539464508 1.2980686841888143 1.2236348187460757 0.9688571247590252 1.1514939188549331 1.0 17.75926231225265 1.8761980254165571 5.229776207270135 1.0433114298928239 1.2710389975907748 0.7431524543364574 0.06032841853408175 0.10214264395362446 3.807175366050713 0.02554523092713535 0.0150727116531769 75.19656899353956 -1.8761980254165571 0.22772756769795088 NEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 45 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 210.58 3.0673999999999996e-37 255200000.0 155890.0 206750.0 268130.0 291470.0 288050.0 361320.0 358840.0 187340.0 347130.0 303680.0 False True 155050.70556100726 213631.54876698562 305880.37337226066 328370.0721149077 324731.4600938882 336342.798855792 341481.53829808027 201320.26209324444 261584.46280369 284298.8824064716 0.5453792299447948 0.751432953090366 1.0759112761299332 1.1550171050107263 1.1422185600772388 1.183060573466875 1.2011357041138584 0.7081289254081912 0.920103732344941 1.0 18.117048902154995 4.420669322332073 3.1671110866052374 1.0403517759465097 0.5680675427128292 0.5771392550206179 0.1415658181580354 0.20292064521902914 3.9282556440676157 0.04136220837233439 0.16281578428610663 26343.24811613371 -4.420669322332073 -0.4722842332336805 NEKDNALLSAIEESR ddPTM_BT-474_Trastuzumab_2h_R1 4 NEKDNALLSAIEESR 15 1 H3BVG0;Q8N1F7;H3BM93;H3BNN5;H3BV11;H3BRI8 H3BVG0 NUP93 Nuclear pore complex protein Nup93 0 ;;; 219.97 1.5798e-12 2016090000.0 1579530.0 1468550.0 1432580.0 1439050.0 1442160.0 1828060.0 1885320.0 1609570.0 2352160.0 1805080.0 False True 1571025.9859822793 1517429.7989927798 1634274.8117914195 1621233.5824508797 1625810.5276479824 1701690.5149903698 1794119.868978196 1729684.2866308517 1772501.6853292044 1689878.2489932599 0.9296681503050374 0.8979521453079737 0.9670961874117464 0.9593789276930009 0.962087374410881 1.0069900100815825 1.061685875918598 1.0235555654150268 1.048893129658996 1.0 20.68848787742866 3.014697182258606 0.9926150289902208 1.0374518188837911 0.924463175028595 0.7835688082248176 0.022930154259702313 0.22475161103554425 0.48227777619837625 0.01094092690535708 0.01376338557381635 1034.4206512803103 -3.014697182258606 -0.11298864385519614 NELEIPGQYDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NELEIPGQYDGR 12 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 89.54799999999999 0.021778 191170000.0 172520.0 168650.0 149810.0 158600.0 129360.0 178180.0 175860.0 145510.0 277090.0 180860.0 False True 171591.17148877372 174263.41329892213 170901.94582813687 178678.7437383756 145833.229223209 165862.83599060393 167352.97994956048 156368.6950848083 208804.88231577325 169317.35995796384 1.013429287648794 1.0292117319936138 1.0093586733845037 1.0552889779449426 0.8613011049747928 0.9795973433071625 0.9883982362535593 0.9235242926279368 1.2332160291632996 1.0 17.369370373490174 1.2548478338879971 24.999940656597676 1.116608133409448 0.9807178293136627 0.3449289899227521 0.07388468435952131 215.34160236936518 330539.5954114132 0.04748867533277684 0.017227224979234224 17.982407453787356 -1.2548478338879971 -0.13589030409578529 NELESYAYSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NELESYAYSLK 11 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 190.53 5.1873e-06 1380700000.0 1053670.0 1168360.0 1041270.0 965230.0 1114740.0 1373960.0 1271770.0 1211660.0 1929030.0 1181570.0 False True 1047997.1577937424 1207248.1563114668 1187871.7651189114 1087428.0190327384 1256695.5314183678 1278981.3791539483 1210249.626466807 1302080.221884812 1453646.4041776925 1106161.1910070297 0.9474181216208319 1.0913853840889223 1.0738685959841836 0.9830646996779584 1.136087164904325 1.1562341813760308 1.0940987952804753 1.1771161675808035 1.3141361457947356 1.0 20.077130201300026 3.13220796098256 6.179525722203869 1.1549172088564192 1.0327459676173423 0.3407949685533884 0.08277627112728159 0.24199223863689182 12.428281147673129 0.02334475475492118 0.028083089025445845 1355.8384972928864 -3.13220796098256 -0.12217124123907697 NELMYQLEQDHDLQAILQER ddPTM_BT-474_Trastuzumab_2h_R1 10 NELMYQLEQDHDLQAILQER 20 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;;;;;;; 296.81 1.1987e-54 5366143000.0 1169888.0 1192776.0 1205833.0 1192288.0 1201437.0 1442124.0 1305667.0 1255880.0 1582891.0 1418028.0 False True 1163589.452994775 1232476.828111681 1375603.8051116741 1343231.5385519578 1354432.8804749886 1342433.3622747436 1242506.8990776916 1349600.1428294212 1192808.7227027216 1327528.2390051505 0.8765082495471198 0.928399706988756 1.0362143453479764 1.011828975900788 1.020266718762985 1.0112277259584044 0.9359551552807842 1.0166263158671573 0.8985185306465588 1.0 20.340311119498143 4.4461254100905885 5.083830075185144 0.9925798000734231 0.8870331334343117 0.45940919961829785 0.04030349199424325 0.1338914773473575 8.805296142734573 0.009574955533701373 0.029983365903172722 27933.503533175965 -4.4461254100905885 -0.10554666663911139 NENEEILERPAQLANAR ddPTM_BT-474_Trastuzumab_2h_R1 4 NENEEILERPAQLANAR 17 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;;; 343.22 6.562499999999998e-73 3765290000.0 1330800.0 1309800.0 1205880.0 1217820.0 1182780.0 1537870.0 1432770.0 1336150.0 1633760.0 1421620.0 False True 1323635.1206657798 1353395.901209181 1375657.4223031416 1371995.8871341036 1333400.0221136934 1431560.6666565847 1363461.4413870804 1435860.2978322227 1231141.7392623972 1330890.9944898847 0.9945481081064148 1.0169096543687428 1.033636434537913 1.0308852436558666 1.0018852239846814 1.0756408094904013 1.024472663074619 1.0788714506123558 0.9250507700176299 1.0 20.343960982686006 4.640273841037292 2.7088633661289774 1.0284218215779135 0.9915061237274435 0.012890068789585873 0.04126969200415549 1.1198393975404628 12.418155758918164 0.009702905122320487 0.08272474310022027 43679.1160726792 -4.640273841037292 -0.03691569785047 NENLAANFLLQQNFDED ddPTM_BT-474_Trastuzumab_2h_R1 9 NENLAANFLLQQNFDED 17 0 P54727;P54727-2 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 ;;;;;;;; 251.68 1.3316e-26 1113705000.0 1595803.0 1500943.4 1382976.5 1380819.0 1407606.0 1744392.0 1651644.0 1516328.0 1834931.0 1640867.9 False True 1587211.3739583807 1550901.3937295543 1577687.570152772 1555630.5438214366 1586856.280565589 1623806.2868970805 1571747.6698272035 1629484.095117568 1382736.841865692 1536146.305804314 1.0332423207093737 1.0096052621221614 1.0270425181452407 1.0126838426414864 1.033011162133234 1.0570648646952077 1.0231757638503376 1.0607610023606333 0.9001335593107468 1.0 20.550884197236382 1.247863094370176 24.99979253973432 0.950066767677929 1.0323460337085728 0.5917730853268921 0.027243915365712093 106.30898257075148 285703.5850457323 0.01747732240629469 0.006195451178100664 17.69551042665741 -1.247863094370176 0.08227926603064384 NENQLIIFADDTYPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NENQLIIFADDTYPR 15 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ; 186.56 8.757999999999998e-07 106637000.0 149179.0 154850.0 159730.0 154810.0 162115.0 184945.0 183663.0 142445.0 210670.0 158724.0 False True 148375.83683934508 160004.08864119826 182218.59560195115 174408.93012697287 182759.38431911348 172160.18746370098 174778.5190292061 153074.96922105376 158753.20133337195 148594.0984295467 0.9985311557288724 1.0767862945584035 1.2262842032609185 1.1737271666254352 1.2299235720035386 1.1585937078472046 1.1762144047199445 1.0301551060160818 1.0683681452439515 1.0 17.18101729330458 1.7080146761073642 6.499110959360979 1.0373603110563168 1.1532278207104543 0.38432165978742483 0.06671779195613892 0.14825828129481622 14.803085732249185 0.03567062498727218 0.0183334142250196 51.052225175523674 -1.7080146761073642 0.1158675096541375 NENTFLDLTVQQIEHLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 NENTFLDLTVQQIEHLNK 18 0 A0A087WYS1;E7EUC7;Q16851;Q16851-2;C9JVG3;C9JQU9;C9JNZ1;C9JWG0 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 ; 217.35 8.464200000000001e-19 1450810000.0 895400.0 760770.0 680790.0 680300.0 752610.0 956800.0 892280.0 854580.0 1197130.0 853030.0 False True 890579.2658882922 786091.7695548234 776639.3144672419 766425.9102472696 848450.4224310394 890658.6680649346 849117.0075593891 918353.0990693121 902113.3522201509 798588.8950842735 1.1151911469972433 0.9843509900946827 0.9725145431496197 0.9597252290446514 1.0624370407022803 1.1152905750973974 1.0632717444308857 1.1499697838553091 1.1296342307952487 1.0 19.60709348490234 3.027478074614948 5.532782470248754 1.1014448702068493 1.003880681009082 0.3279315219051301 0.05552158083191177 0.17602726166396618 15.41602864614697 0.016152314451392313 0.01901690232086007 1065.3150798091197 -3.027478074614948 -0.09756418919776744 NEQLPLQYLADVDT(ph)SDEESIR ddPTM_BT-474_Trastuzumab_2h_R1 1 NEQLPLQYLADVDTSDEESIR 21 0 Q9BV36-2;H7C2D8;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 1 NEQLPLQYLADVDT(0.5)S(0.5)DEESIR 175.61 5.4195e-12 131600000.0 129050.0 121920.0 122880.0 132600.0 131750.0 127810.0 138080.0 121480.0 149940.0 136290.0 True False 128355.20913880275 125978.03349780355 140180.43590789323 149387.14640421557 148527.58155656912 118974.79553237789 131400.54288317618 130545.45446294078 112989.29609306398 127591.85551626049 1.0059827770311325 0.9873516846986267 1.0986628836197811 1.1708203928829726 1.1640835612555265 0.9324638712320911 1.0298505523844372 1.0231488047158612 0.8855525741505065 1.0 16.961176715911783 2.729085200912441 24.984387522792563 0.9842052930268053 1.0854188269027754 0.39872847672626444 0.06770769867973135 843.5808897279561 2224313.981231886 0.02384561149149994 0.022755636081241 535.9017816726299 -2.729085200912441 0.1012135338759701 NES(ph)SPIRFDILLDDLDTVPVSTLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NESSPIRFDILLDDLDTVPVSTLQR 25 1 A0A0A0MTP3;Q99550-2;Q99550;F5H1U6 A0A0A0MTP3 MPHOSPH9 M-phase phosphoprotein 9 1 NES(0.5)S(0.5)PIRFDILLDDLDTVPVSTLQR;NES(0.5)S(0.5)PIRFDILLDDLDTVPVSTLQR 65.425 0.028246 28007000.0 16354.9 14405.8 14753.7 14822.9 14907.5 17995.0 17658.7 13278.1 21117.0 19122.1 True False 16266.847035600218 14885.288344510005 16830.892718540723 16699.47762017382 16805.881761324894 16751.048005673583 16804.481218215104 14268.979246825618 15912.998303302855 17901.71120674653 0.9086755365302626 0.831500864503962 0.9401834564395021 0.9328425326110931 0.9387863298225558 0.9357232843394713 0.9387080946698593 0.7970734798496881 0.8889093405386743 1.0 14.127809879412766 -0.21971560960337555 8.018559156775442 1.0000129521829095 0.89769800874771 0.27672099820272866 0.04749868880107787 0.0 0.0 0.050122757274499025 0.01181404718685521 0.6029542912476247 0.21971560960337555 -0.10231494343519953 NESEDNKFS(ph)DDS(ph)DDDFVQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NESEDNKFSDDSDDDFVQPR 20 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 2 NESEDNKFS(1)DDS(1)DDDFVQPR;NESEDNKFS(1)DDS(1)DDDFVQPR 219.95 5.041800000000001e-25 977640000.0 1710930.0 1260330.0 1182920.0 1026410.0 1123510.0 1599260.0 1535390.0 1568920.0 2279130.0 1575670.0 True False 1701718.5429821946 1302279.3221644252 1349464.853875041 1156353.4007598115 1266582.3389345058 1488706.9204531007 1461117.3199406108 1686000.777214333 1717468.950277342 1475109.391601045 1.1536219297846066 0.882835760913274 0.9148235795654228 0.7839102695324419 0.8586362110811258 1.009217979988113 0.9905145531984937 1.1429666076387677 1.164299380138341 1.0 20.49239051557385 2.1283796843678515 1.8712259604043957 1.1130957526545247 0.9135828300739522 0.3518054356032906 0.10116359232588013 0.3426916669328618 2.3289304979966983 0.055485649139096815 0.03182804577786683 134.39393941807484 -2.1283796843678515 -0.1995129225805724 NESS(ph)PAPPDSDADKLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NESSPAPPDSDADKLK 16 1 Q8ND04;Q8ND04-2;J3KTD7 Q8ND04 SMG8 Protein SMG8 1 NES(0.109)S(0.891)PAPPDSDADKLK 159.06 5.6111e-09 246330000.0 331510.0 198930.0 156860.0 157260.0 146100.0 281560.0 262790.0 233850.0 426620.0 229410.0 True False 329725.1869942239 205551.2647942758 178944.52454843838 177169.0998757688 164704.96899745546 262096.4199209479 250077.84374471218 251301.07446623893 321485.2174151185 214768.85739221764 1.5352560468861154 0.957081335209097 0.8331958679728144 0.8249291914433247 0.7668940972045405 1.220365108346687 1.1644045919004549 1.1701001603193568 1.4968893596524195 1.0 17.7124252845984 2.7010967920503415 23.523793053977872 1.2126187458548165 0.9648486482146802 0.1927060625115944 0.2305926773455465 448.01714878153905 281312.0267213542 0.07537101820708607 0.07106298105803904 502.45456006304056 -2.7010967920503415 -0.24777009764013636 NESSFASHK ddPTM_BT-474_Trastuzumab_2h_R1 1 NESSFASHK 9 0 E5RH53;Q96DB5-3;Q96DB5-2;Q96DB5;H0YC67;H0YB03;H0YB83 E5RH53 RMDN1 Regulator of microtubule dynamics protein 1 0 131.82 0.00032243 334130000.0 342050.0 329210.0 363390.0 326020.0 341620.0 500050.0 391340.0 366140.0 551080.0 390900.0 False True 340208.4408053278 340167.55583835277 414552.1533574971 367294.0985724162 385123.2820596221 465482.7204910852 372409.3891360235 393463.2260212476 415273.7180936746 365952.4273336728 0.9296520951755517 0.9295403730938787 1.132803398457886 1.0036662449502487 1.052386193652623 1.271976043122844 1.0176442655385458 1.075175887991831 1.1347751430953918 1.0 18.48129658931054 4.248987345331408 24.986885821951553 1.0869238702858393 0.9295961245296404 0.39789874578480877 0.07697864526215041 197.0596794226976 472229.1396757275 0.018299106439787563 0.04896457069970905 17741.377845096384 -4.248987345331408 -0.1573277457561989 NETDEDGWTTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NETDEDGWTTVR 12 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 185.3 3.0752e-05 161040000.0 303070.0 304710.0 258500.0 278790.0 289080.0 289650.0 297940.0 270920.0 314290.0 282120.0 False True 301438.30479424255 314852.08814891503 294894.55307772104 314084.7854150177 325892.6244885999 269627.1772627596 283527.5039586725 291137.4261038851 236837.44077023512 264114.8600649159 1.1413152017275856 1.1921028906572262 1.1165390429195838 1.1891977048842304 1.2339049170065624 1.020870908954115 1.073500763603325 1.102313690461519 0.8967213761165261 1.0 18.01080594950806 1.9251145367972224 0.836986586724145 0.9721401940499207 1.1695086080935246 0.5935982220886235 0.06198122080908253 0.44221870312529726 0.5767233941537373 0.053673494216548934 0.025834868396919095 84.16170726570172 -1.9251145367972224 0.19736841404360395 NETLDATHLAEFHQIEGVVADHGLTLGHLMGVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NETLDATHLAEFHQIEGVVADHGLTLGHLMGVLR 34 0 K7ER00;Q9Y285;Q9Y285-2;K7EPH2 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 ; 292.78 3.030599999999999e-90 521330000.0 472690.0 520610.0 518230.0 524330.0 544860.0 611490.0 546370.0 106615.0 683370.0 365890.0 False True 470145.0895607963 537938.1891346092 591192.27946409 590710.1242392341 614244.6913617629 569219.1355926277 519939.9957639119 114571.15268000045 514962.6201888556 342538.58694581134 1.3725317598603042 1.5704455195283138 1.7259143991202808 1.7245068052221597 1.7932131291793258 1.6617664616064893 1.5179019695266185 0.33447663138204425 1.5033711231789524 1.0 18.385906991151383 1.9233141378705214 9.029796809805585 0.8826211634007486 1.6475279439839712 0.5423558612087536 0.2854314909115193 0.2641485371117859 29.432077130444203 0.11446035093368948 0.07237851458360613 83.81353106465454 -1.9233141378705214 0.7649067805832226 NEVNGTSEDIKSEGDTQS(ph)N ddPTM_BT-474_Trastuzumab_2h_R1 2 NEVNGTSEDIKSEGDTQSN 19 1 O95232 O95232 LUC7L3 Luc7-like protein 3 1 NEVNGTSEDIKSEGDT(0.083)QS(0.917)N;NEVNGTSEDIKSEGDT(0.09)QS(0.91)N 280.32 3.278e-39 803360000.0 1976250.0 1385910.0 1328630.0 1189530.0 1295370.0 1913460.0 1802940.0 1858180.0 2644900.0 1791650.0 True False 1965610.089582017 1432039.176549714 1515689.5553410177 1340124.376034742 1460327.6912404778 1781187.0140003439 1715724.9043003574 1996846.8272468506 1993099.8348442342 1677305.3630912637 1.1718856523295254 0.8537736825156718 0.9036455666889486 0.79897459670963 0.8706391354697053 1.0619336545360034 1.022905513840537 1.190508819197164 1.1882748834541155 1.0 20.677713933070233 2.3819303256092015 1.8997852790048504 1.1329459986222008 0.9109052064669149 0.3708614370474165 0.11021150254146861 0.31519381737606766 2.322802286522893 0.04901579644708904 0.03624468272573482 240.95188356455952 -2.3819303256092015 -0.22204079215528594 NEVSFVIHNLPVLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NEVSFVIHNLPVLAK 15 0 P49903;P49903-4;P49903-3 P49903 SEPHS1 Selenide, water dikinase 1 0 109.35 0.0010068 134300000.0 245450.0 239420.0 256150.0 247490.0 198470.0 289220.0 258650.0 265090.0 380380.0 270280.0 False True 244128.52447205875 247388.94996755387 292213.6935042872 278822.2086242788 223743.97807614642 269226.9021506485 246138.11136104751 284872.36189974495 286640.44583086285 253030.4990016501 0.9648185710231979 0.9777040749776988 1.1548556188176413 1.1019312285451426 0.884256953050894 1.0640096874206961 0.9727606447926357 1.1258419954263583 1.1328296271074956 1.0 17.948951764915737 1.716574581808037 10.86704515856391 1.0961699461449033 1.0209403385738094 0.13062615245230902 0.07991287087069866 0.20397750491368416 64.50672801689011 0.03818498086064038 0.020767696581175117 52.068441875887494 -1.716574581808037 -0.07522960757109387 NFAFLEFR ddPTM_BT-474_Trastuzumab_2h_R1 1 NFAFLEFR 8 0 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 135.83 0.0019006 222960000.0 546700.0 567410.0 525380.0 499880.0 303800.0 479830.0 422480.0 357240.0 874550.0 483840.0 False True 543756.6279440796 586295.8988434111 599348.9373151764 563164.7567461495 342487.12923632417 446660.4814983248 402043.02836967097 383899.0628279638 659028.8708696077 452960.9169637351 1.20044932703899 1.2943631048202577 1.3231802455114718 1.2432965751683993 0.7561074618359278 0.986090553887865 0.8875887815324679 0.8475324215636456 1.45493539550206 1.0 18.789027049354956 3.3590791750065883 8.246594167544997 0.9655645540586443 1.2759001980325788 0.36595983440380875 0.17702941832187724 0.2386117471780963 16.20069167225511 0.048149776033980386 0.06522951232541688 2286.015522454818 -3.3590791750065883 0.31033564397393454 NFAWKEEY(ph)DT(ph)RQASNRWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NFAWKEEYDTRQASNRWEK 19 3 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0;A0A2R8Y4N5 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 2 NFAWKEEY(0.984)DT(0.978)RQAS(0.038)NRWEK 62.684 0.022435 338760000.0 148250.0 245330.0 210200.0 198370.0 219180.0 219040.0 211770.0 201520.0 133160.0 247150.0 True False 147451.8384721236 253495.66074488327 239794.3329088474 223483.62166066584 247091.273818359 203898.28036469794 201525.876060039 216558.44569782552 100344.50225258364 231376.67540423962 0.6372804787453601 1.0955972995203576 1.0363807522512856 0.9658865625509409 1.0679178157723301 0.8812395631861595 0.8709861342244282 0.935956251076194 0.43368460575064943 1.0 17.81988391116102 1.4215651212704907 24.998857730018454 0.7061666224226973 0.9453108815566139 0.19690551598303396 0.17647438420673509 104.61640898061378 47076.899382066964 0.1037506082795349 0.03969824188937124 26.39764118104904 -1.4215651212704907 0.23914425913391657 NFDEILR ddPTM_BT-474_Trastuzumab_2h_R1 10 NFDEILR 7 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ;;;;;;;;; 197.17 0.00099664 14022700000.0 12404030.0 13057300.0 12439250.0 12501200.0 12338400.0 14046680.0 14464180.0 12569590.0 16886900.0 13228530.0 False True 12337248.080697276 13491904.337195462 14190588.276100736 14083850.638223084 13909622.104573622 13075666.073928028 13764492.354866564 13507596.63288472 12725349.767866865 12384273.889885677 0.9962027802674158 1.0894384650370494 1.145855494014089 1.137236689324633 1.123168158928858 1.0558282375042607 1.1114492845727613 1.0907055797527596 1.0275410477040359 1.0 23.562005947719477 1.1586019194539303 3.0841071846657213 1.0011085840777612 1.097808822410458 0.3838729548917481 0.04106991000162006 0.24088240123365862 4.099499111909021 0.039163405034286475 0.010619478427738981 14.40794093560931 -1.1586019194539303 0.09670023833269692 NFDFEGS(ph)LSPVIAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 NFDFEGS(0.61)LS(0.39)PVIAPK 101.39 0.0030087 0.0 28344.0 27353.0 28087.0 25165.0 27055.0 32629.0 30917.0 28932.0 41952.0 30199.0 True False 28191.39905331444 28263.428069762318 32041.40546341954 28350.886419774422 30500.293882451453 30373.434030404187 29421.42659559061 31091.052753719185 31613.49172799931 28271.673965335343 0.9971605886471621 0.9997083336634706 1.1333395221912352 1.0028018310672444 1.078828721633133 1.074341550049207 1.0406680068419367 1.099724508419302 1.1182037457973468 1.0 14.787069687196423 4.343232144894755 12.209095297186941 1.070323133477911 0.9978839157440932 0.30781070413363687 0.04195425241235913 0.4925249058979444 54.308392770896354 0.009520888605279054 0.02608746343704281 22041.04315541285 -4.343232144894755 -0.0724392177338179 NFDFEGSLS(ph)PVIAPK ddPTM_BT-474_Trastuzumab_2h_R1 8 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 NFDFEGS(0.094)LS(0.906)PVIAPK;NFDFEGS(0.011)LS(0.989)PVIAPK;NFDFEGS(0.127)LS(0.873)PVIAPK;NFDFEGS(0.099)LS(0.901)PVIAPK;NFDFEGS(0.025)LS(0.975)PVIAPK;NFDFEGS(0.021)LS(0.979)PVIAPK;NFDFEGS(0.002)LS(0.998)PVIAPK;NFDFEGS(0.004)LS(0.996)PVIAPK 280.54 1.0810999999999999e-33 2385101000.0 1751805.0 1546860.0 1456939.0 1355833.0 1300837.0 1586497.0 1541877.0 1484586.0 1989027.0 1461808.0 True False 1742373.4765238315 1598346.300003385 1662063.3472591953 1527481.3187833119 1466490.881285032 1476826.196602232 1467290.5189678657 1595373.345894958 1498857.9474463009 1368514.1619232083 1.2731862957671034 1.1679428276848722 1.2145021173353843 1.1161604032191401 1.0715935005189383 1.0791457170796173 1.072177811375985 1.1657704321107927 1.095244747295795 1.0 20.384178933680435 3.685233084542216 3.334772351242015 1.0931693307466879 1.2156975202402829 0.6413932523755086 0.04552995651598429 0.17199299489132214 3.8450617105747873 0.012491224491686484 0.021397003111295516 4844.322911814107 -3.685233084542216 0.12252818949359501 NFDLRPGVIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFDLRPGVIVR 11 1 P31153;P31153-2;Q00266 P31153 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 0 ; 69.86399999999999 0.048644 1442460000.0 3182200.0 3161000.0 2637700.0 2861800.0 2562400.0 3162700.0 2717600.0 2633900.0 4207900.0 3224600.0 False True 3165067.388775655 3266211.974135151 3009065.232700603 3224103.5865730383 2888706.451465294 2944069.9931949917 2586139.3057598462 2830454.9926731996 3170919.4279712094 3018803.2672810466 1.0484510279553079 1.0819558894531536 0.996774206956118 1.0680071873239028 0.9569045067541195 0.9752440727436456 0.8566769930950522 0.9376082977485687 1.050389557457704 1.0 21.525545310088884 3.228028524761047 22.829027860033193 0.951579507103331 1.0474496376260385 0.39439239695757433 0.0510688920992657 67.02634102265031 145283.74072672904 0.015013476619695435 0.01816017451966267 1690.5519646156504 -3.228028524761047 0.09587013052270754 NFDVGHVPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFDVGHVPIR 10 0 F8VQZ7;P50579-3;P50579;F8VRR3;P50579-2 F8VQZ7 METAP2 Methionine aminopeptidase 2 0 ; 103.22 0.0033619999999999995 260550000.0 415060.0 431500.0 423190.0 420870.0 412780.0 441150.0 364070.0 409790.0 538640.0 426680.0 False True 412825.3630775011 445862.2166527419 482771.4735665791 474152.09884722676 465345.08626125735 410654.33885539934 346458.54321754014 440370.61067145667 405899.38940621517 399448.9171008734 1.0334872505693882 1.1161933292715565 1.2085937723162337 1.1870156071232718 1.164967700097039 1.0280522021084768 0.8673413004397967 1.102445373660255 1.0161484285704367 1.0 18.607651492590417 2.6778448001407584 5.444479638537585 1.0040426408063203 1.146773467630169 0.5015303638766284 0.06953916494744336 0.19118200057533466 11.813811479134106 0.023628011133888186 0.022399398673851063 476.26075942571913 -2.6778448001407584 0.14273082682384874 NFEATLGWLQEHACSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFEATLGWLQEHACSR 16 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 217.91 1.3819e-14 2281880000.0 806370.0 768740.0 743350.0 794530.0 738450.0 830180.0 715310.0 736780.0 1091920.0 820800.0 False True 802028.5935161287 794327.0461868567 848007.2186859738 895117.4165350035 832487.2303639363 772791.6106335159 680707.72255044 791762.264893032 822830.9469783808 768415.8412777656 1.0437429194360048 1.0337202898706572 1.103578522373848 1.1648867298812466 1.0833811403206226 1.0056945329868188 0.8858585234506885 1.030382538153358 1.0708146589093357 1.0 19.5515277356283 2.7223777654099357 5.289189785859024 0.9928829637704192 1.088679930885667 0.3863974678459152 0.05489117977884318 0.19428247461807818 17.74206300507314 0.018930553080218078 0.01854995149417549 527.6886649778453 -2.7223777654099357 0.09579696711524777 NFEDVAFDEK ddPTM_BT-474_Trastuzumab_2h_R1 4 NFEDVAFDEK 10 0 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 ;;; 170.99 9.6707e-06 1871330000.0 4341590.0 4043180.0 3577210.0 3290150.0 3583200.0 4741030.0 4713600.0 4647100.0 6190500.0 4163870.0 False True 4318215.361835991 4177754.8021460804 4080850.07433329 3706682.6526533226 4039499.2807096695 4413293.755284177 4485585.160299386 4993890.199495654 4664934.223450124 3898128.251731544 1.1077663645155453 1.0717335429613757 1.046874245997571 0.9508878141725631 1.0362663873143036 1.1321571457593262 1.1507023039344317 1.2810995116123678 1.1967113245640304 1.0 21.894350126593466 2.4949367802876434 2.458753501190367 1.1908536972215769 1.0398144573662913 0.30326731626657355 0.0772570998534568 0.2726775606496893 3.32417161714739 0.02936698066824599 0.025024901866662886 312.56243407237594 -2.4949367802876434 -0.15103923985528556 NFEDVAFDEKK ddPTM_BT-474_Trastuzumab_2h_R1 6 NFEDVAFDEKK 11 1 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 ;;;;; 168.59 2.8679e-05 21149100000.0 13163810.0 10726170.0 8507110.0 8826590.0 9230180.0 13510960.0 14110680.0 13325160.0 21900940.0 12069010.0 False True 13092937.50959679 11083184.084343305 9704837.142874328 9944035.38898935 10405588.71143691 12576979.136578819 13428092.500367722 14319551.10299146 16503746.794560665 11298755.449000692 1.1587946627125896 0.9809207867512122 0.8589297455528754 0.8801000635754835 0.9209499894395203 1.1131296002774516 1.1884576634106507 1.2673564949366118 1.460669440015212 1.0 23.429660533627377 2.3986175837996826 2.0734139429548146 1.2614438359835178 0.9515187885051841 0.4819092582932707 0.13062478438186198 0.25017365269226804 2.199209476175092 0.05507902642205313 0.042287980594568994 250.39034802338875 -2.3986175837996826 -0.3099250474783337 NFEHLIPDAPELIHDFLVNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NFEHLIPDAPELIHDFLVNEK 21 0 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 116.74 7.1016e-05 853810000.0 856400.0 788780.0 779760.0 762220.0 733940.0 892410.0 909360.0 731040.0 1273100.0 1011000.0 False True 851789.2375549853 815034.0654724204 889543.43020458 858716.9738478231 827402.9085968004 830719.7972071782 865370.7827074508 785593.9169459036 959361.5636659965 946477.114439352 0.8999575632206858 0.8611239015062798 0.9398467396979833 0.9072770601077726 0.874192197543957 0.8776966548200767 0.914307139079697 0.8300189248751694 1.0136130594497013 1.0 19.852208096811623 1.222964874420021 24.99999534997946 1.0068066724388032 0.8871839444506484 0.7292683408625366 0.02893849316521769 137.25044758239298 220006.6129970295 0.027538723543106443 0.006982780585465509 16.70955462574277 -1.222964874420021 -0.11962272798815476 NFEHLNSDFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 NFEHLNSDFDR 11 0 P48163 P48163 ME1 NADP-dependent malic enzyme 0 ;;; 146.5 3.5741e-05 1186250000.0 700310.0 789490.0 772600.0 820930.0 746640.0 791850.0 829260.0 784880.0 1079250.0 909510.0 False True 696539.6087717556 815767.6973932161 881375.3644404156 924859.6538281497 841720.1783180031 737111.2733144003 789145.5257191667 843451.731139884 813283.2987090771 851464.2931293137 0.8180491118562626 0.9580762270078231 1.0351289790452307 1.0861989883675476 0.9885560499836125 0.8656983965884917 0.9268098874926249 0.9905896676418668 0.955158431506372 1.0 19.699586504980214 7.999898989938496 0.004509284735328253 1.8752623019293804 0.0029579076687292626 0.033597550052318126 0.07292831558522607 423862.26722657605 147.8179047002983 28696.823450721855 32806.24743269073 99976744.27837601 -7.999898989938496 -1.8723043942606512 NFETLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFETLR 6 0 Q9BVG4;A6NDF3 Q9BVG4;A6NDF3 PBDC1 Protein PBDC1 0 ; 143.02 0.026643 160180000.0 506200.0 540720.0 468220.0 474620.0 468640.0 560190.0 479020.0 420290.0 653590.0 534960.0 False True 503474.67544410744 558717.5383278573 534141.3061588033 534706.8433361154 528318.5261530977 521465.38384541764 455847.9725658962 451654.1739893767 492521.5021573003 500818.394797701 1.0053038799572835 1.1156090593548265 1.0665369157907283 1.0676661418399043 1.0549103859623707 1.0412264989908302 0.9102061292098307 0.9018322383542171 0.9834333308708597 1.0 18.933928027114792 2.3268668251537274 5.041985033138535 0.9356675349906315 1.0637304608931113 0.6603670118863677 0.038186892066968764 0.10691886706694533 4.593345724985452 0.013304869702423722 0.010946749324010699 212.25934765123878 -2.3268668251537274 0.1280629259024798 NFEWVAER ddPTM_BT-474_Trastuzumab_2h_R1 6 NFEWVAER 8 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;;;;; 138.26 0.0016587 2806170000.0 2272140.0 3157870.0 3043460.0 3315660.0 2869610.0 2613230.0 2771980.0 2177740.0 2789090.0 2912820.0 False True 2259907.0506984843 3262977.793977274 3471952.7137714564 3735422.2160377176 3235037.8239889652 2432583.5609817407 2637888.7374080718 2340254.0171396537 2101756.141391245 2726921.333809336 0.8287393635743564 1.1965793635194826 1.2732133746305614 1.369831307461873 1.1863333877218316 0.892062242801693 0.967350507952904 0.8582037142488695 0.7707432243581538 1.0 21.37884165133014 2.739530234889514 9.301441466748457 0.8921936816166308 1.18922207521466 0.4768047030883782 0.14242788516225477 0.0881704846556603 153.0715810658252 0.0460648911080756 0.04617712248725573 548.9467710758962 -2.739530234889514 0.29702839359802924 NFGEDMDDER ddPTM_BT-474_Trastuzumab_2h_R1 12 NFGEDMDDER 10 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YBN4 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ;;;;;;;;;;; 182.46 5.6926e-06 17095620000.0 7509105.0 7493355.0 6579266.0 6628512.0 6986105.0 7879071.0 7707466.0 7181991.0 9005188.0 7328704.0 False True 7468676.813020004 7742766.791346246 7505569.464794765 7467680.939563357 7875744.061861524 7334409.367108116 7334626.424200615 7717947.637831336 6785980.080737004 6860979.8363008285 1.088572913959593 1.1285220152346116 1.0939500834973266 1.0884277636340698 1.1479036886527008 1.0690031951853896 1.0690348316422336 1.1249045795173989 0.9890686523859161 1.0 22.70998319587194 1.2326986618951372 24.999999607809794 0.9945342495382109 1.1015522857261644 0.7525331883755395 0.024487221340850646 68.8238110153097 293504.3436054739 0.020748625960508447 0.005740253972214412 17.08829221166726 -1.2326986618951372 0.10701803618795347 NFGEDMDDERLK ddPTM_BT-474_Trastuzumab_2h_R1 4 NFGEDMDDERLK 12 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YBN4 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ;;; 178.58 1.9893e-05 1256490000.0 798230.0 876210.0 821550.0 892050.0 854070.0 980640.0 1075000.0 903190.0 1771000.0 1152170.0 False True 793932.4183716895 905374.1201698702 937217.0989593875 1004983.4385360529 962830.7520305056 912850.664978258 1022998.143101203 970590.6241058912 1334560.7801841823 1078637.5241776349 0.7360511762067543 0.8393682769938283 0.8688897594898084 0.9317156282897384 0.8926360621141735 0.8462997480773028 0.9484169799128286 0.8998302046332759 1.237265300223693 1.0 20.040778698349555 1.3479932779253523 6.31706428163474 1.116263790593498 0.8738502880232113 0.6268370619671229 0.07667345523916566 0.12463847531681077 6.156391214830189 0.051186515764645925 0.018397825414498185 22.28400657486234 -1.3479932779253523 -0.2424135025702867 NFGEEVDDESLKELFSQFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NFGEEVDDESLKELFSQFGK 20 1 B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YCC8 B1ANR0 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 ; 313.4 2.1958999999999997e-66 1744990000.0 1635240.0 1248980.0 1172540.0 1071980.0 1112160.0 1549540.0 1544390.0 1569030.0 2572900.0 1556330.0 False True 1626436.0495322454 1290551.544275647 1337623.4400996175 1207692.5580874148 1253786.9837112245 1442423.9470248104 1469681.9555572744 1686118.985972903 1938843.270093662 1457003.6869588515 1.1162882181355653 0.8857572261669195 0.9180645540380121 0.8288877844970906 0.8605242354109662 0.9899933403981476 1.0087016036485712 1.1572510083981153 1.330705809084489 1.0 20.474573097481933 1.9196771534489856 2.021140725084282 1.1857997969124958 0.9203651414544509 0.48282889040032817 0.10553717820559877 0.2477527066327585 1.8715967086552237 0.06258680812308168 0.030406817931151124 83.11456829395303 -1.9196771534489856 -0.2654346554580449 NFGIWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFGIWLR 7 0 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 0 ; 109.11 0.016523 401230000.0 690080.0 510000.0 403460.0 400870.0 234870.0 395400.0 257960.0 299960.0 805250.0 408720.0 False True 686364.6859550949 526975.0416984892 460263.6610628137 451620.1008978724 264779.30231644347 368066.9286714831 245481.48929710366 322344.5383660169 606806.927297183 382635.139677203 1.7937837244486297 1.377225944650702 1.2028787043738307 1.1802891424945083 0.6919889860084869 0.9619266254060986 0.6415550059103189 0.8424331822684967 1.5858630438623456 1.0 18.545609845533583 4.586154701400148 0.9685263021511973 0.9286813201763784 2.091967927522807 0.503377145485546 0.2516934585951596 1.25151809292975 1.1107689648665078 0.0809873457007001 1.4468557536847535 38561.569458028236 -4.586154701400148 1.1632866073464285 NFGSYVTHETK ddPTM_BT-474_Trastuzumab_2h_R1 5 NFGSYVTHETK 11 0 P63167;Q96FJ2 P63167;Q96FJ2 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic 0 ;;;; 184.03 5.0872e-06 1814120000.0 3839620.0 3239950.0 3116240.0 3007650.0 2966590.0 4119770.0 3836080.0 3594650.0 4806590.0 3913000.0 False True 3818947.9125418845 3347789.777158868 3554979.5051563554 3388418.1816186984 3344367.652143476 3834979.9967954364 3650514.1551513155 3862901.0362628456 3622070.2995062005 3663268.9899121546 1.0424972676203783 0.9138804129257099 0.9704391118823092 0.9249711639930522 0.9129462404625859 1.0468737096173217 0.9965181823131298 1.0544956013059468 0.9887535721456966 1.0 21.804700209809404 2.7326243433210498 24.978260514713618 1.021718860253757 0.9501940707875266 0.3874183405306457 0.040215166993056835 443.4809008571602 1866044.360640608 0.012223453647963262 0.011808906948324338 540.2867827129021 -2.7326243433210498 -0.07152478946623042 NFHEVMLALTVLETCVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NFHEVMLALTVLETCVK 17 0 O60784;O60784-4;O60784-2;O60784-3;V9GYF4;B0QY02;V9GZ68;Q6UW50;H7BYN7 O60784 TOM1 Target of Myb protein 1 0 111.43 0.00050978 51616000.0 38046.0 33437.0 32895.0 42341.0 35483.0 46050.0 35107.0 36480.0 54922.0 37554.0 False True 37841.164563308 34549.93033190667 37526.3300715344 47701.36625867945 40001.54972578173 42866.67189003994 33408.74028823626 39202.32284168658 41387.2090170952 35157.27156840305 1.0763396269156749 0.9827250179151497 1.067384594920059 1.356799436664766 1.1377887970616125 1.2192832372283855 0.95026544432594 1.115055892929955 1.1772019605267432 1.0 15.101535491911559 -1.4783165936398612 8.20435515025078 0.9999938410751341 1.1173764168907951 0.09600103135904547 0.11043088562042724 1.2701194210931284e-05 8.076085300042225e-07 0.10916616103778383 0.025729361250122058 0.03324171382392333 1.4783165936398612 0.11738257581566103 NFLIEPFVPHSQAEEFYVCIYATR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFLIEPFVPHSQAEEFYVCIYATR 24 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 ; 223.89 7.277999999999999e-33 139480000.0 264690.0 232140.0 193261.0 206742.0 222970.0 267050.0 196512.0 209145.0 324250.0 262780.0 False True 263264.9384498236 239866.63956840683 220470.46894527477 232915.5160022654 251363.90785326954 248589.46206808192 187005.96381125934 224752.46191679107 244342.9322273976 246009.15542272304 1.0701428489417377 0.9750313526187211 0.8961880648971597 0.946775804347775 1.021766476216486 1.0104886610456634 0.7601585538144823 0.9135938925955576 0.993226987050696 1.0 17.908352482022362 NFLNAIATDIIHLHSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFLNAIATDIIHLHSQR 17 0 Q9NUQ8-2;Q9NUQ8 Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 0 ; 140.02 3.9151e-07 166298000.0 159522.0 160459.0 130612.0 143698.0 139246.0 160149.0 135694.0 62367.0 201748.0 133472.0 False True 158663.15127656038 165799.78081548633 149001.0343001444 161890.15206631218 156978.15272429612 149078.2765801957 129129.96281858128 67021.142233209 152029.90868469697 124953.70268887182 1.2697755077464437 1.3268896979253115 1.192449932205284 1.2956010793006285 1.2562905247807141 1.1930680994015264 1.0334224599979092 0.5363677969598719 1.2166899052462934 1.0 16.93103412713575 2.133423045046266 3.544311067074593 0.8513216731111471 1.2601026975901852 0.4460643361915577 0.16569842334716867 0.1691000615593976 4.1212199195531865 0.06607361056805303 0.04623781337972382 135.963722057316 -2.133423045046266 0.4087810244790381 NFMPALEETPFHSCTAGPNPTLGRPLS(ph)PKPSSPGSVLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 NFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLAR 39 2 F8VWK5;F8VUY0;F8VVS9;Q15583-4;Q15583-2;Q15583-3;Q15583 F8VWK5 TGIF1 Homeobox protein TGIF1 1 NFMPALEETPFHSCTAGPNPT(0.007)LGRPLS(0.992)PKPS(0.001)SPGSVLAR;NFMPALEETPFHSCTAGPNPT(0.012)LGRPLS(0.988)PKPSSPGSVLAR;NFMPALEETPFHSCTAGPNPT(0.15)LGRPLS(0.85)PKPSSPGSVLAR 239.61 1.6031e-50 1672470000.0 589140.0 408104.0 335483.0 356859.0 349792.0 551740.0 391502.0 430741.0 759730.0 519540.0 True False 585968.1356996075 421687.49493592285 382716.09032948967 402037.31281042227 394335.9378203833 513599.51245625736 372563.5525771232 462885.08067847905 572504.7213604334 486382.51239942765 1.2047475407964463 0.8669873693765209 0.786862357450868 0.8265866937260703 0.8107527054684611 1.0559580152718948 0.7659887908781682 0.9516893985249781 1.1770668286080983 1.0 18.891731832889015 1.4203599881462483 6.819696523507946 1.0843557008065874 0.8936820322000216 0.22947634244476423 0.1336690480276122 0.2795511240853009 23.258718311693 0.08452830118119084 0.032213983630433526 26.324491336698355 -1.4203599881462483 -0.19067366860656576 NFNIHGTNK ddPTM_BT-474_Trastuzumab_2h_R1 1 NFNIHGTNK 9 0 H7C3P4;F6S8M0;P15586-2;P15586;H0YFA9;F5H4C6 H7C3P4 GNS N-acetylglucosamine-6-sulfatase 0 107.79 0.0027168 708450000.0 884810.0 863410.0 829020.0 815200.0 741990.0 1030800.0 941730.0 812700.0 1276000.0 912620.0 False True 880046.281271633 892148.0799076331 945738.810028985 918404.2364156602 836478.0283807121 959543.2222421971 896174.9221420432 873347.8008069809 961546.897524007 854375.8102667081 1.0300458775827366 1.044210368771014 1.1069353774584938 1.074941759094238 0.9790516284860535 1.1230926844039033 1.0489235666237868 1.0222056737940068 1.1254378763647856 1.0 19.704511275368773 -1.6523461071951058 4.331398102186112 0.9981611467925959 1.0589351608436637 0.14374225146789865 0.04470023171339785 0.0007755791851030331 6.225071699979113e-05 0.042289749543931054 0.009669218114977446 0.022266599248054988 1.6523461071951058 0.06077401405106775 NFPNAIEHTLQWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFPNAIEHTLQWAR 14 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ; 241.27 1.9709e-17 9160800000.0 4959600.0 4196000.0 3746300.0 3913800.0 3302980.0 4783100.0 3980100.0 3771810.0 6060100.0 4748300.0 False True 4932898.064663364 4335661.323464437 4273746.47657666 4409286.678709044 3723594.9247037307 4452455.555206304 3787567.357541488 4053281.6150630927 4566669.556179648 4445259.428775844 1.1096985774847807 0.9753449473382956 0.9614166608389791 0.9919076151475131 0.8376552559788735 1.0016188315993162 0.8520464144394213 0.9118211613982907 1.0273122703745636 1.0 22.083836187633803 NFQAATESVPNSGNIHNGSLEQTEEPETSSHS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NFQAATESVPNSGNIHNGSLEQTEEPETSSHSPSR 35 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 NFQAATESVPNSGNIHNGSLEQTEEPET(0.012)S(0.035)S(0.135)HS(0.805)PS(0.013)R 169.83 1.1772e-14 449400000.0 25150.0 30843.0 34123.0 40639.0 32492.0 43493.0 37932.0 34670.0 46733.0 43205.0 True False 25014.595194427686 31869.59061001277 38927.22179756705 45783.89323318947 36629.66360482768 40486.43128150938 36097.08424568823 37257.25145069277 35216.278340117075 40447.61991033853 0.6184441816324001 0.7879225200557921 0.9624106902670221 1.131930465492902 0.905607392623491 1.000959546476576 0.892440255463875 0.921123456294389 0.8706637972316312 1.0 15.303767191115044 4.486321605538563 2.7078156585649484 0.9577378117421314 0.6210153805096872 0.7016078099589793 0.07127979150987207 0.17139004484871848 2.253316349879488 0.01867771673467249 0.09927327768714071 30642.317312254323 -4.486321605538563 -0.33672243123244416 NFQETIHQLEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NFQETIHQLEGR 12 0 Q9Y4K3 Q9Y4K3 TRAF6 TNF receptor-associated factor 6 0 147.18 6.5366e-05 89173000.0 56753.0 63324.0 56992.0 64246.0 65216.0 67079.0 59067.0 59671.0 78989.0 65650.0 False True 56447.44815385109 65431.70105983363 65015.97821665561 72379.53701270923 73520.87103448363 62441.98661698139 56209.70355214776 64123.95302319841 59523.21934837281 61460.16079420717 0.9184396432488906 1.0646197506531871 1.0578556478944907 1.1776659233786329 1.1962362298507558 1.0159749959988187 0.9145713715322026 1.0433417712314594 0.9684846017191526 1.0 15.907363920914133 2.492413115567989 24.794864616578653 0.9859612273670355 1.0878402110345604 0.2816405048434597 0.07671031845936747 854.0704354284809 1384827.4923556338 0.026507229620736553 0.024242766255336112 310.75141550019976 -2.492413115567989 0.1018789836675249 NFRNPLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NFRNPLAK 8 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ; 119.27 0.0015738 1855740000.0 1150690.0 1139200.0 1227110.0 1214620.0 1213930.0 2038050.0 1698590.0 1399530.0 1787460.0 1730080.0 False True 1144494.812893677 1177117.5833390588 1399876.4217686744 1368390.767462207 1368516.7899731752 1897164.4005536553 1616422.7124560685 1503970.0352693421 1346964.4337368791 1619664.8132039923 0.7066244840064517 0.7267661640500207 0.8643000763839919 0.8448604651448102 0.8449382729170979 1.171331490989619 0.9979982890771638 0.9285686908850079 0.8316315960907602 1.0 20.627263850111763 3.842988559102214 1.0000794937936013 0.9706040349498818 0.694226460803929 0.5287474066056377 0.09023391666697331 0.5787107188661211 1.0147949532795923 0.03390711386167511 0.12630259643718258 6966.081626739069 -3.842988559102214 -0.27637757414595276 NFRPDDPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 NFRPDDPTR 9 1 P50570-2;P50570-5;P50570;P50570-3;P50570-4;K7EMQ3 P50570-2 DNM2 Dynamin-2 0 ;;; 118.18 0.00094087 4816290000.0 1852960.0 1794340.0 1630970.0 1720600.0 1760110.0 2045210.0 1895830.0 1675460.0 2193250.0 1779710.0 False True 1842983.8692432079 1854063.5221985667 1860596.3993546257 1938427.7835829079 1984249.5755106886 1903829.4466064826 1804121.4601260992 1800491.3330134933 1652752.9255443013 1666127.3841136105 1.1061482374132432 1.112798180905561 1.1167191759137156 1.16343312166024 1.1909350956177465 1.1426674003196526 1.082823244686001 1.0806444634312071 0.9919727274776025 1.0 20.66806727579203 1.5357572920832012 1.429413069740313 0.9924457172891489 1.138372987789644 0.7914524439393321 0.02774814384714552 0.182438979721365 0.7179095269700622 0.02651372475830989 0.009051296986584077 34.336600224600716 -1.5357572920832012 0.14592727050049514 NFTEVHPDYGSHIQALLDKYNAEKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 NFTEVHPDYGSHIQALLDKYNAEKPK 26 2 P04040 P04040 CAT Catalase 0 83.36200000000002 0.0046979 378180000.0 549550.0 435670.0 343610.0 356750.0 326740.0 544400.0 468340.0 318520.0 946030.0 426410.0 False True 546591.2838607449 450171.01258192316 391987.30128833937 401914.51342159876 368348.4022602912 506766.9093797563 445684.60496745835 342289.5798117874 712893.5826525349 399196.1487320319 1.3692298525346114 1.127693776635378 0.9819415907027409 1.0068095964808308 0.9227253404880721 1.269468432973118 1.1164551721831182 0.8574470993745881 1.7858227964295277 1.0 18.60673827669515 1.2605049199989862 24.999884561903297 1.3929125589419393 1.0695251844620643 0.2277739220849312 0.2285338000420883 268.5773487771703 305976.1036955565 0.14349134364960464 0.05230439795890883 18.21817711831014 -1.2605049199989862 -0.323387374479875 NFWNGR ddPTM_BT-474_Trastuzumab_2h_R1 2 NFWNGR 6 0 P47755;P52907 P47755;P52907 CAPZA2;CAPZA1 F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1 0 ; 155.81 0.02287 3893000000.0 1808100.0 1741640.0 1343300.0 1565610.0 1553100.0 1911910.0 1365560.0 1402220.0 1977750.0 1862150.0 False True 1798365.3904987946 1799609.434556386 1532424.963827091 1763816.0654743917 1750878.079055086 1779744.1618520361 1299502.6458542133 1506860.776728884 1490360.012992244 1743305.9927331754 1.0315833238657641 1.032296935855155 0.8790338415716321 1.0117650445915467 1.0043435210763194 1.020901763242225 0.7454242980125583 0.8643696419389979 0.8549044282556731 1.0 20.733394389191353 2.2606019876910297 24.981645561959965 0.8519807777146307 0.9939642399067221 0.4412252656009473 0.07118276490910291 190.4477094437985 215852.4076015474 0.023728537705912833 0.019837383282937618 182.22249456593698 -2.2606019876910297 0.14198346219209146 NFWSHETR ddPTM_BT-474_Trastuzumab_2h_R1 4 NFWSHETR 8 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 182.76 0.00022683 2399270000.0 1369370.0 1456640.0 1460890.0 1487510.0 1215800.0 1606950.0 1312510.0 1211590.0 2130600.0 1617450.0 False True 1361997.4640713083 1505123.3818425245 1666570.6137164873 1675828.6134821624 1370624.923388818 1495865.3288534132 1249018.8770248955 1302004.9981293583 1605542.1785773095 1514222.9562313848 0.8994695652092496 0.9939905980480527 1.1006111133490322 1.106725140168911 0.905167180135774 0.9878765360791648 0.824857972126818 0.8598502570386353 1.0603076462221923 1.0 20.530146214652788 3.215662155892841 24.99610728989355 0.9222257891947383 1.0283565206778087 0.17840121577812107 0.08499581919959304 327.88720747229667 357922.9923666533 0.025639384667101865 0.03066364096036753 1643.0930395246528 -3.215662155892841 0.1061307314830704 NFYES(ph)DDDQKEK ddPTM_BT-474_Trastuzumab_2h_R1 5 NFYESDDDQKEK 12 1 O00203;O00203-3 O00203 AP3B1 AP-3 complex subunit beta-1 1 NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK 264.3 4.112e-21 5259730000.0 5485250.0 3354450.0 2938880.0 2478730.0 2827590.0 4427200.0 4309470.0 3976030.0 6990290.0 4074040.0 True False 5455718.023468572 3466100.8404421518 3352648.758797109 2792536.9638500893 3187666.8260610243 4121158.084507818 4101004.4723259024 4272741.548471247 5267626.694587054 3814031.279238877 1.4304334768217495 0.9087761968050357 0.87903022113289 0.7321746360736099 0.8357736454372108 1.0805255077326557 1.0752414367048122 1.120269141925839 1.381117853768167 1.0 21.862885244704724 2.206655945245495 1.7769549030860372 1.1726953739585604 0.942748336686431 0.16304971505396104 0.19602888069768634 0.6003649819201017 3.7574011775658853 0.10554679043453155 0.06433625145311526 160.93701622757607 -2.206655945245495 -0.2299470372721294 NFYNEHEEITNLTPQQLIDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 NFYNEHEEITNLTPQQLIDLR 21 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 ;;; 216.46 6.1771e-25 914560000.0 481300.0 495347.0 451602.0 488242.0 507050.0 531606.0 524918.0 463788.0 607482.0 556682.0 False True 478708.7342774569 511834.32545141503 515183.6362050487 550053.3871394198 571619.8119791908 494857.3284859189 499525.71095850994 498398.21562774526 457776.2009417537 521154.0781605624 0.9185550959652502 0.9821170876335807 0.9885438065138306 1.0554525239078218 1.0968345752886548 0.9495413146003594 0.9584990924787717 0.95633563376663 0.8783893672241732 1.0 18.991350439906896 2.5347789782443746 24.99997224196974 0.9473622097088968 1.009849957146987 0.24856296709815384 0.051900169698591986 399.2240758872583 173099.9541573572 0.017544181713192317 0.016540762757090467 342.5933890658077 -2.5347789782443746 0.06248774743809016 NFYQEHPDLAR ddPTM_BT-474_Trastuzumab_2h_R1 6 NFYQEHPDLAR 11 0 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRX8;J3QR02;J3KTQ4;X6RLV5 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;;;; 217.42 1.1359999999999998e-11 14687440000.0 4426150.0 4506270.0 4262290.0 4341460.0 4064660.0 4619760.0 4584340.0 4107110.0 5919220.0 4477100.0 False True 4402320.100191499 4656258.472852256 4862383.383511183 4891088.390860075 4582270.357872671 4300406.864945302 4362577.960320538 4413603.403682 4460507.544484361 4191367.6449618484 1.0503302198945068 1.1109162610560352 1.1600946982915985 1.1669432999367908 1.0932637616222238 1.026015188649586 1.0408483172704952 1.0530222537236231 1.0642129066978954 1.0 21.998989642045544 2.9285619870776696 4.591267066322497 1.0420198613629976 1.1247765735321569 0.5859523281233739 0.0338615465571662 0.1665124248997128 6.6508659794388025 0.010909317220696003 0.011832622854283967 848.3244556033072 -2.9285619870776696 0.08275671216915925 NFYVEHPEVAR ddPTM_BT-474_Trastuzumab_2h_R1 8 NFYVEHPEVAR 11 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;;;;; 140.0 3.8803e-05 10701730000.0 5818450.0 5779840.0 5531330.0 5783900.0 5275830.0 6280110.0 5965140.0 5456660.0 7906220.0 6398550.0 False True 5787124.111690572 5972218.480412934 6310093.184817761 6516141.146963373 5947675.678205647 5845980.777488786 5676583.389152287 5863863.677558036 5957838.018920261 5990189.060925744 0.9661004106598617 0.9969999977746892 1.053404678990646 1.0878022514294978 0.9929028312315861 0.9759259212071227 0.9476467823329451 0.9789112860908291 0.9945993287229431 1.0 22.514170107055364 3.013030667943348 24.99625053155216 0.9764413474545204 1.0277519916735767 0.3103931175380884 0.032758071171471045 274.8054480482596 527145.045469494 0.010152554160363652 0.01212831380015766 1030.4588842924836 -3.013030667943348 0.05131064421905629 NGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_BT-474_Trastuzumab_2h_R1 5 NGAAGPHSPDPLLDEQAFGDLTDLPVVPK 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;NGAAGPHS(0.966)PDPLLDEQAFGDLT(0.034)DLPVVPK 225.18 7.998899999999998e-35 1339793000.0 500960.0 405020.0 421003.0 398839.0 376253.0 520545.0 478112.0 418739.0 615269.0 520403.0 True False 498262.887021889 418500.8458602397 480276.5629763243 449331.97650611564 424166.5893237483 484560.9493811254 454983.8959947932 449987.43049355806 463644.1991322078 487190.4350005762 1.0227271539542842 0.8590087485189334 0.9858086868551849 0.9222922787997351 0.8706381711357832 0.9946027560671471 0.9338933265269362 0.923637654119843 0.9516693387702889 1.0 18.89412628355812 NGALDQQKDELDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 NGALDQQKDELDVR 14 1 P12270 P12270 TPR Nucleoprotein TPR 0 ;; 118.21 0.00023588 855170000.0 1676510.0 1385160.0 1400330.0 1316990.0 1290550.0 1911020.0 1898460.0 1645570.0 2698050.0 1732550.0 False True 1667483.8564377716 1431264.2132530992 1597484.2921134457 1483720.7989659721 1454893.8928108565 1778915.6854572028 1806624.2369785241 1768370.7894351447 2033151.7295177444 1621977.17568932 1.0280563015500583 0.8824194536799383 0.984899366068166 0.9147605904721867 0.8969878951549023 1.0967575327940025 1.1138407272659254 1.0902562723693132 1.2535020590864234 1.0 20.629322087552904 2.6770900515356275 6.01088189409927 1.1157831259554738 0.9392226450029676 0.5948899925589091 0.06990063441172449 0.1455710635732524 10.823922767079393 0.021428248936341075 0.020271896801856138 475.43379755015184 -2.6770900515356275 -0.1765604809525062 NGAPIIMSFPHFYQADER ddPTM_BT-474_Trastuzumab_2h_R1 1 NGAPIIMSFPHFYQADER 18 0 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PPU6;A0A1W2PRF6;Q14108-2 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 216.96 8.68e-19 1234500000.0 715120.0 838170.0 857050.0 769240.0 956730.0 988510.0 831280.0 828240.0 971540.0 748330.0 False True 711269.8733773014 866067.9817655365 977715.1903878563 866625.7051280469 1078563.8945170126 920176.6304022453 791067.8106020167 890047.4745175015 732116.9849690221 700570.938722454 1.0152717363274555 1.2362316703357397 1.395597699457526 1.2370277686773687 1.539549865548032 1.3134667448242423 1.1291758862344345 1.2704601708723071 1.0450290534518814 1.0 19.418171617543116 1.2341304138112157 1.3148504034690929 0.9912108693981712 1.2888676978118383 0.3354317942219881 0.1349233197529283 0.46222896413748743 1.5625125295498044 0.12693525960110344 0.0398804924979041 17.14472067143308 -1.2341304138112157 0.29765682841366714 NGDECAYHHPIS(ph)PCK ddPTM_BT-474_Trastuzumab_2h_R1 4 NGDECAYHHPISPCK 15 0 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;G3V411;Q6PJT7-8;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6;Q6PJT7-6;H0YJ51 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK;NGDECAY(0.001)HHPIS(0.999)PCK 217.17 3.5225e-12 1021990000.0 1164230.0 845590.0 770170.0 755790.0 673217.0 1182760.0 974340.0 562542.0 1683110.0 927750.0 True False 1157961.915038113 873734.9519800498 878603.2415623544 851472.9365071047 758947.1944802196 1100998.5851175596 927207.4518597465 604521.7405703953 1268330.0930185183 868540.2007132642 1.3332277700988042 1.0059810141919967 1.0115861543781466 0.980349482738803 0.8738193049175567 1.2676426309494893 1.0675469610943782 0.6960204491098383 1.4603009647416871 1.0 19.728233100606136 4.739796691764428 23.576090764005745 1.0166032262998892 1.3332279995025207 0.15694515374354623 0.19681775908114318 80.5003720315757 1534988.3349654186 0.04543377031792009 0.2811030883653905 54928.367501506094 -4.739796691764428 0.3166247732026315 NGDGFVSLEEFLGDYR ddPTM_BT-474_Trastuzumab_2h_R1 3 NGDGFVSLEEFLGDYR 16 0 Q14257;Q14257-2;A8MXP8 Q14257 RCN2 Reticulocalbin-2 0 ;; 217.16 3.377400000000001e-14 184434000.0 130720.0 140310.0 126381.0 127111.0 128028.0 148571.0 157655.0 147998.0 184435.0 137385.0 False True 130016.2180443574 144980.13353081406 144174.34627665568 143203.23956701544 144331.6069185915 138300.6364685152 150028.62534941413 159042.36227861646 138983.46555238237 128616.97167878391 1.0108791736215657 1.1272239708216465 1.1209589558423574 1.1134085781825138 1.1221816610567874 1.0752907230152788 1.1664761142417894 1.2365581322799204 1.0805997353093368 1.0 16.972721500782978 2.2319663264044745 24.97865616976553 1.151823956645488 1.0997091971530617 0.0 0.06775419453827365 338.5445160443942 1282370.3639976825 0.024410652269746164 0.018445857971496216 170.59501107828746 -2.2319663264044745 -0.05211475949242628 NGDLDEVKDYVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 NGDLDEVKDYVAK 13 1 P58546;C9JL85 P58546 MTPN Myotrophin 0 ;; 183.41 9.4637e-06 5259280000.0 4227960.0 3412120.0 3014710.0 3043110.0 2935190.0 4707110.0 4669490.0 4323430.0 7260600.0 4166850.0 False True 4205197.133130516 3525690.3515299 3439154.963670939 3428367.4139829003 3308969.048265854 4381718.565045078 4443608.929515941 4646066.300532698 5471322.417055485 3900918.065580236 1.0780019119691562 0.9038104087955194 0.8816270697957834 0.8788616823903871 0.8482539219325199 1.1232531653784752 1.139118754819318 1.1910186839163017 1.4025730161655323 1.0 21.895382265809577 2.578998611887691 3.5419077642802033 1.1921428049580753 0.9135470664339078 0.5758377246378121 0.10902059205393325 0.16908750301338227 3.9300120828981346 0.03676076853338026 0.03381931673484469 379.3137725913467 -2.578998611887691 -0.2785957385241675 NGEELHGGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 NGEELHGGKR 10 1 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;; 157.38 6.0213e-06 303851000.0 509265.0 418515.0 396652.0 384020.0 409495.0 509434.0 530502.0 462599.0 699235.0 494080.0 False True 506523.1738246603 432445.01877733984 452497.1538390105 432636.8926255423 461641.7609829774 474218.02665864525 504839.5915455574 497120.4864101252 526917.903518964 462547.39139683003 1.0950730308845313 0.9349204574939118 0.978271983055684 0.9353352773626891 0.998042080810103 1.0252312205816825 1.0914332259468824 1.0747449789066783 1.1391652257031302 1.0 18.819241662401964 2.4868430505103882 2.4136737112398725 1.0824802582578623 0.9814905193629048 0.37616108573930473 0.05267189892632997 0.26799315561332654 3.154385877154695 0.01925044959017048 0.0162737435184253 306.79130762867743 -2.4868430505103882 -0.10098973889495755 NGEFELMHVDEFIDELLHSER ddPTM_BT-474_Trastuzumab_2h_R1 8 NGEFELMHVDEFIDELLHSER 21 0 Q8NAV1 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 0 ;;;;;;; 290.78 5.9075e-55 317130000.0 151785.3 175865.8 160485.3 166762.09999999998 162366.2 184876.1 177700.8 147287.3 223414.4 165554.0 False True 150968.1048097321 181719.38683987904 183080.23527676592 187874.1647614966 183042.57315013435 172096.05035852795 169104.73342102166 158278.62623575496 168356.91471958256 154988.20198208958 0.9740619149009674 1.1724723850972767 1.1812527207582075 1.2121836524254104 1.181009720799824 1.1103816171660301 1.0910813291489334 1.02123015953205 1.0862563251042674 1.0 17.241798873228262 2.1576520152040426 2.005524108353305 1.0390694434109382 1.1505285623438868 0.3323061636706063 0.06503913145690741 0.3725950307374952 2.9559343502047892 0.03369711284784821 0.020371695391715197 143.76461816321162 -2.1576520152040426 0.11145911893294858 NGETVPIDEQFDKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NGETVPIDEQFDKEK 15 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 135.09 2.8404e-05 383890000.0 275960.0 187560.0 173040.0 172780.0 177430.0 284700.0 275820.0 227460.0 403260.0 238800.0 False True 274474.26202203834 193802.82121758553 197402.52790935745 194653.9302844673 200024.65878999655 265019.35911171307 262477.5328652785 244434.22021847637 303881.9764071559 223559.57955303433 1.2277454742525389 0.8668956239990168 0.8829974018739298 0.8707027033851178 0.8947264044328073 1.1854529322410152 1.174083138776935 1.0933739484891545 1.3592885485592308 1.0 17.770299841286054 2.7356753080596676 24.966927955297262 1.1628419673799566 0.9360999161456781 0.40149036688996476 0.13008728022795918 238.7284803834737 2065735.766303618 0.03998763592666206 0.03921722716981263 544.0957180141646 -2.7356753080596676 -0.22674205123427849 NGGS(ph)FEDDLSLGAEANHLHESDAQIENCNNILAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NGGSFEDDLSLGAEANHLHESDAQIENCNNILAK 34 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 NGGS(0.631)FEDDLS(0.322)LGAEANHLHES(0.047)DAQIENCNNILAK 156.81 3.6499e-11 101660000.0 40949.0 46534.0 43664.0 55369.0 46860.0 65765.0 70142.0 9555.5 57174.0 32270.0 True False 40728.53513386159 48082.856059602964 49811.5116657084 62378.709722888554 52827.34323901958 61218.82034415803 66748.96349153925 10268.579931845832 43084.23379234914 30210.500972263024 1.3481582172786681 1.591594131581895 1.6488144871030614 2.0648022282106453 1.7486417483616579 2.026408645138473 2.2094623175174437 0.3399010145933581 1.4261343706913632 1.0 14.882762487620827 1.74428405089306 24.999999999999996 0.8912199542315344 1.807459753338968 0.584305641045765 0.34115585708363155 0.737661513072692 3233.791655110913 0.1547007261343138 0.08578943987771777 55.498858531097184 -1.74428405089306 0.9162397991074336 NGGSFEDDLS(ph)LGAEANHLHESDAQIENCNNILAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NGGSFEDDLSLGAEANHLHESDAQIENCNNILAK 34 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 NGGS(0.066)FEDDLS(0.467)LGAEANHLHES(0.467)DAQIENCNNILAK 95.741 0.00041377 108240000.0 12714.0 15872.0 12743.0 13712.0 17177.0 21468.0 21138.0 7406.0 15235.0 16242.0 True False 12645.549236658195 16400.289925173383 14537.103635858413 15447.937794076968 19364.38913394451 19983.967690236215 20115.474184998366 7958.673326905994 11480.538388540941 15205.421654524203 0.8316473902514668 1.0785817255053667 0.9560473866591566 1.015949320253188 1.2735187207506904 1.3142659338414473 1.3229145920470564 0.5234102353575956 0.7550292684665562 1.0 13.892298203182643 1.7383716134031488 24.99999999976303 0.728148480587 1.116043995033964 0.4322416527772147 0.18475173790977242 0.042705698037179385 3128.5331552314437 0.08902789639708315 0.04937050177219924 54.74842291663401 -1.7383716134031488 0.387895514446964 NGHDGDTHQEDDGEKS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 4 NGHDGDTHQEDDGEKSD 17 1 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D 279.79 4.1693999999999994e-36 1149230000.0 2628100.0 1703230.0 1373350.0 1316190.0 1443390.0 2013040.0 1961590.0 292410.0 2337130.0 968310.0 True False 2613950.601609362 1759920.9809257232 1566705.742627808 1482819.5190479974 1627197.1608572018 1873883.2829864484 1866700.3976985023 314231.11902789347 1761175.6274375233 906511.6267881002 2.8835268344775247 1.9414212999797629 1.7282798105732735 1.6357424165665013 1.7950096973632792 2.0671365127724655 2.0592128578785993 0.34663771510715097 1.94280533794985 1.0 19.789965998324572 7.999999999999999 0.1927450403784755 0.9785401534327491 8.104366634378858 0.3959610661331464 0.4977330236198745 55.27118122932188 0.6513925197732245 1.0161027186997285 117.79114621322087 99999999.99999979 -7.999999999999999 7.125826480946109 NGHVGISFVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 NGHVGISFVPK 11 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 ; 117.23 0.00088222 936620000.0 2368100.0 2101600.0 2164500.0 1963280.0 2202900.0 3108700.0 2799700.0 1546470.0 3821800.0 2372400.0 False True 2355350.4127206453 2171550.485555974 2469242.7858287324 2211831.0467003677 2483426.2573887394 2893802.8860926656 2664267.815107387 1661875.444215543 2879968.599496273 2220991.4008861757 1.0604950617012117 0.9777392585534213 1.11177503201656 0.9958755562123505 1.118161131284818 1.3029329536971814 1.1995849304253694 0.7482583874716735 1.2967040747421017 1.0 21.082772376471613 NGIHDLDNISFPK ddPTM_BT-474_Trastuzumab_2h_R1 4 NGIHDLDNISFPK 13 0 P49721;A0A087WVV1 P49721 PSMB2 Proteasome subunit beta type-2 0 ;;; 146.96 3.986e-05 3091440000.0 4670500.0 4130850.0 3903300.0 3567270.0 3741100.0 5184970.0 4941200.0 4773270.0 6641200.0 4884650.0 False True 4645354.546941328 4268342.845098445 4452850.711908198 4018886.0162395695 4217506.909763042 4826545.228006528 4702175.278782948 5129475.645573934 5004565.247520715 4572907.455040733 1.015842676155787 0.933398037695566 0.9737460807346546 0.8788470039579603 0.9222812731786356 1.0554653194842614 1.0282681915199754 1.1217099178160042 1.0943946049037496 1.0 22.124680291988668 2.6736713103321743 4.920066625912622 1.0709018321929842 0.942147940092243 0.6080231922972625 0.04585204897067219 0.13803751127291986 6.693942692822992 0.015299005928754286 0.01451565974665715 471.7059021579418 -2.6736713103321743 -0.12875389210074117 NGIS(ph)FTIWDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGISFTIWDR 10 0 A0AVT1;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 1 NGIS(0.977)FT(0.023)IWDR;NGIS(0.978)FT(0.022)IWDR 103.85 0.0028945 54102000.0 91329.0 77372.0 81260.0 82334.0 71928.0 85247.0 77107.0 75299.0 104596.0 91669.0 True False 90837.29481160583 79947.28024763835 92700.70167541817 92757.47595810487 81087.6044493428 79354.07553985315 73377.03983265534 80918.1937405745 78819.71731459326 85818.60593822063 1.058480195739815 0.9315844667203177 1.0801935158694123 1.0808550773346215 0.9448720771311108 0.9246721578882184 0.8550248402482585 0.942898021424703 0.9184455567984202 1.0 16.389002845278593 3.1020686934246804 5.844530293226762 0.9215638568764 1.0327511829958438 0.5058218238049899 0.0515607255076156 0.1686694508763988 8.273228540226249 0.014907149811764882 0.0179169610802937 1264.9364097467414 -3.1020686934246804 0.11118732611944382 NGLPDHTDPEDNEIVCFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NGLPDHTDPEDNEIVCFLK 19 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 164.02 2.4563000000000003e-11 96705000.0 86653.0 82180.0 86597.0 73923.0 74842.0 90895.0 92254.0 83464.0 127020.0 100440.0 False True 86186.46987605332 84915.31162114088 98789.10488538277 83281.644220504 84372.68507671152 84611.64259381511 87791.32157549616 89692.50750160427 95717.6229807988 94029.83320898976 0.9165864378861137 0.9030677682093614 1.05061448599845 0.8856938418193623 0.8972969768986577 0.8998382716021427 0.9336539115237188 0.9538728767310967 1.0179495136193402 1.0 16.520830938405386 1.4158607126302218 2.795341120855097 1.0093658902526186 0.9270361588626669 0.3476072045018398 0.04431308052708648 0.3039071285906599 4.201822973176702 0.03656855157237885 0.011851164065818789 26.053178357934122 -1.4158607126302218 -0.0823297313899517 NGLPGSRPGS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 5 NGLPGSRPGSPER 13 1 Q92993-2;Q92993-4;Q92993;Q92993-3;H0YEP0;E9PRM3;E9PRL6 Q92993-2 KAT5 Histone acetyltransferase KAT5 1 NGLPGS(0.001)RPGS(0.999)PER;NGLPGS(0.001)RPGS(0.999)PER;NGLPGS(0.001)RPGS(0.999)PER;NGLPGSRPGS(1)PER;NGLPGS(0.034)RPGS(0.966)PER 99.044 0.0018418 1592360000.0 2044990.0 2225320.0 2189090.0 2047240.0 2329350.0 2443670.0 2537580.0 2233350.0 3048700.0 2486150.0 True False 2033980.0010597494 2299388.430965654 2497294.844088624 2306420.374091755 2625978.9153608666 2274744.8446804346 2414827.560903024 2400013.91772151 2297388.735487021 2327481.7784999 0.8738972823970647 0.9879297239644331 1.072959997864375 0.9909509906360173 1.1282489683134502 0.9773416340756682 1.037528019858192 1.0311633542705363 0.9870705569895915 1.0 21.15033844251287 4.6749264451025185 3.1561911487377086 1.0303142080519394 0.8609386870514124 0.5320359671483192 0.0433740772075906 0.20352809344083853 3.249126206958865 0.009739461614683578 0.0775238308181907 47307.112981693106 -4.6749264451025185 -0.169375521000527 NGLS(ph)PPPCK ddPTM_BT-474_Trastuzumab_2h_R1 1 NGLSPPPCK 9 0 Q6NXG1;Q6NXG1-2;Q6NXG1-4;H0YBR2;H0YBB3 Q6NXG1 ESRP1 Epithelial splicing regulatory protein 1 1 NGLS(1)PPPCK 80.834 0.019619 0.0 565240.0 472150.0 464140.0 421860.0 446830.0 585550.0 521830.0 543300.0 671760.0 514660.0 True False 562196.8106440675 487865.2273292976 529486.8776227992 475267.4327457201 503731.15193109534 545072.3067364367 496587.08931581484 583843.8048214992 506213.74912282615 481813.95817740564 1.166833797781061 1.0125593479582504 1.0989446624288959 0.9864127526391108 1.0454889140958006 1.1312920630160306 1.0306614843502928 1.2117619153875276 1.0506415194730336 1.0 18.8781166635749 2.753113659870006 23.316316482261804 1.1026926664395262 1.0571463964305459 0.0 0.07215483172118053 857.2097043470256 1373383.9693277096 0.0212675750098073 0.02244091780842576 566.3874997779839 -2.753113659870006 -0.04554627000898037 NGMVLKPHFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NGMVLKPHFHK 11 1 P26373;P26373-2;J3QSB4;H3BTH3 P26373 RPL13 60S ribosomal protein L13 0 ; 121.9 0.00025936 1570290000.0 3615700.0 3101200.0 3089100.0 2704500.0 2419840.0 3483900.0 3419200.0 512730.0 6053700.0 2293660.0 False True 3596233.4729420315 3204421.5672850087 3524018.4290614664 3046889.4227013686 2727992.2804846177 3243066.19321846 3253800.2333875704 550992.5161901854 4561846.750424039 2147276.6550988774 1.67478813892122 1.4923189146009004 1.6411571469812272 1.4189552219395158 1.270442853279658 1.510315955569835 1.5153148643707208 0.25660061775543 2.1244802059350736 1.0 21.034076649308098 NGNYCVLQMDQSYKPDENEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGNYCVLQMDQSYKPDENEVR 21 1 P31939-2;P31939;H7C1S2 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ; 332.27 3.580599999999999e-80 1505820000.0 908560.0 635870.0 563890.0 576570.0 618630.0 935450.0 911410.0 833870.0 1235690.0 944130.0 False True 903668.4139105045 657034.5485584672 643280.8105802562 649563.7028829454 697408.8635927165 870784.5433124406 867321.616375692 896097.6137060621 931170.75689768 883874.81508964 1.0223941201660522 0.7433570199551762 0.7277962892460247 0.734904640106833 0.7890357906871545 0.9851899029662116 0.9812720099822403 1.0138286535692076 1.0535097742356687 1.0 19.75348252681552 2.706988578128243 4.550045139831914 1.0084081670919793 0.7913004189757394 0.6094048008643222 0.08121387108022413 0.13698033077660912 7.014918681109602 0.026682287685060497 0.025877206914255133 509.3174759171824 -2.706988578128243 -0.2171077481162399 NGPLNES(ph)QEDEEDSEHGTSLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGPLNESQEDEEDSEHGTSLNR 22 0 Q9H2K8 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 1 NGPLNES(1)QEDEEDSEHGTSLNR;NGPLNES(1)QEDEEDSEHGTSLNR 259.47 2.0754999999999998e-37 1952390000.0 267850.0 231738.0 239140.0 297490.0 319380.0 349720.0 246000.0 269670.0 358350.0 307000.0 True False 266407.9253609328 239451.25924142063 272808.8333578578 335152.20349766326 360051.1498864291 325544.67955232924 234100.04018874088 289794.1447565137 270039.444143987 287406.9971640767 0.9269361149507579 0.8331434572023352 0.9492073472453245 1.1661240220478328 1.2527570777300205 1.1326957338010815 0.8145244983548413 1.0083058088911947 0.939571572051272 1.0 18.13273566027879 3.993185854600406 21.559927075989986 1.042331147322312 0.8828234235871476 0.2478145491176632 0.11729816046342767 78.26855836017198 247664.33738641633 0.03295998005933808 0.06685826737494661 9844.322995273142 -3.993185854600406 -0.15950772373516442 NGPSSS(ph)PFSSPASSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NGPSSSPFSSPASSR 15 0 A8CG34-2;A8CG34;A6NF01;C9JFL1;Q96HA1-2;Q96HA1-3;Q96HA1 A8CG34-2;Q96HA1-2 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 1 NGPSS(0.028)S(0.971)PFS(0.001)SPASSR 116.86 0.0012442 0.0 201760.0 193450.0 173090.0 161280.0 185210.0 249290.0 219260.0 193040.0 287070.0 205780.0 True False 200673.74657764344 199888.86630700537 197459.5674747495 181698.0314635891 208795.39567432407 232057.16906553868 208653.55614546052 207445.6250372581 216325.44504092194 192646.94422287823 1.0416658690702034 1.0375916789821944 1.0249815706721173 0.943165915226654 1.083824072666127 1.2045722811832704 1.083087805971445 1.0768176254966126 1.1229113750729907 1.0 17.55559977650246 3.0226608362723004 24.274976290444478 1.1033619696966883 1.0144860839354197 0.36527336075794725 0.053753491099813436 172.5735588802335 184864.19105834482 0.015324571856217068 0.018315063753259173 1053.5637908645351 -3.0226608362723004 -0.08887588576126859 NGQLDLSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 NGQLDLSGK 9 0 Q92734-2;Q92734;Q92734-4;Q92734-3;C9JTY3;C9JUE0;C9JJP5 Q92734-2 TFG Protein TFG 0 ;; 65.305 0.06693500000000001 1125240000.0 1126460.0 2633750.0 2644620.0 2614730.0 2920430.0 1972890.0 2152400.0 2066980.0 1333790.0 2158770.0 False True 1120395.2645214717 2721412.7766145016 3016959.5085508837 2945754.5499056946 3292329.449755227 1836508.7579835164 2048280.189033515 2221228.5435117683 1005095.3263703317 2020995.4503840187 0.5543779251499948 1.3465704616491805 1.4928086592068366 1.4575760422152153 1.629063266386689 0.9087149392813095 1.013500643281662 1.0990764690191175 0.4973268624525349 1.0 20.946634643285364 2.7042722689997136 24.088446290823583 0.9346553714626439 1.3187858392050238 0.2821644416768101 0.30989678913553115 555.1622715120997 390014.8547616166 0.10147147732066727 0.0956739242106057 506.14187430840684 -2.7042722689997136 0.3841304677423799 NGS(ph)EADIDEGLYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 NGSEADIDEGLYSR 14 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 NGS(1)EADIDEGLYSR;NGS(1)EADIDEGLYSR;NGS(1)EADIDEGLYSR 298.47 1.0404000000000002e-43 554400000.0 805110.0 640610.0 588162.0 620190.0 615525.0 809920.0 734330.0 647685.0 1036100.0 714200.0 True False 800775.3772161293 661932.3165930776 670970.0972042504 698705.9904104867 693908.4602474931 753932.1367466059 698807.6524869828 696018.5435777892 780767.0380287009 668619.144542617 1.197655472105748 0.9899990480318752 1.0035161312397682 1.0449984809939166 1.0378232001151804 1.1275957963518215 1.0451505288036835 1.040979082425041 1.1677306047866771 1.0 19.350825138607313 NGS(ph)PNKQPSSEPEWTPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NGSPNKQPSSEPEWTPEPR 19 1 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 NGS(0.99)PNKQPS(0.004)S(0.006)EPEWTPEPR 92.147 0.0011888 442220000.0 80298.0 63974.0 61875.0 59428.0 68481.0 95845.0 94236.0 78693.0 117400.0 84965.0 True False 79865.68448994649 66103.33591690037 70586.4621728588 66951.57870670992 77201.64943131238 89219.46074486172 89677.444663521 84565.47125495729 88468.34307940309 79542.46095780384 1.0040635344726652 0.831044641075001 0.8874060636658442 0.841708666044753 0.9705715475947718 1.1216582900570726 1.1274160188618458 1.0631487916852118 1.1122153126030927 1.0 16.27943757780894 2.946933857404962 3.85407137563985 1.0891831647031534 0.8872117694958093 0.7297695692538506 0.055652040923787706 0.10743688234196025 3.245664942333337 0.01643703227531001 0.018180458462852392 884.9808179144624 -2.946933857404962 -0.20197139520734408 NGS(ph)PPPGAPSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 NGSPPPGAPSSR 12 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR 137.73 9.1342e-05 713090000.0 595280.0 525676.0 467894.0 452202.0 452840.0 531860.0 568520.0 521523.0 688270.0 509180.0 True False 592075.0786218254 543172.8078821482 533769.4081924462 509450.72683468385 510506.4898070339 495093.77006377134 541018.5156426948 560441.694500135 518655.08084549237 476683.6964690705 1.2420711742555728 1.1394826630438195 1.1197559558806511 1.068739565897319 1.0709543741237602 1.0386211522044269 1.1349633302967361 1.1757098022262633 1.088048709631388 1.0 18.862672757647108 4.796819827637983 1.6186192340017251 1.0961130918818862 1.3095657861757495 0.49880590947555214 0.04706942406946489 1.1493514806479772 2.586525739846494 0.013510582902081708 0.4022248047918 62635.39601850524 -4.796819827637983 0.21345269429386327 NGS(ph)PTPAGSLGGGAVATAGGPGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGSPTPAGSLGGGAVATAGGPGSR 24 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 NGS(0.95)PT(0.05)PAGSLGGGAVATAGGPGSR;NGS(0.973)PT(0.027)PAGSLGGGAVATAGGPGSR 365.13 1.4912999999999991e-118 676250000.0 323720.0 256969.0 228631.0 256864.0 225536.0 304830.0 314100.0 240736.0 392720.0 286990.0 True False 321977.12748867326 265522.0578239592 260820.25750372343 289382.9560631407 254256.67274339587 283757.8195926357 298905.78302147717 258700.94275263848 295939.4181783918 268674.05249549943 1.1983930881977027 0.9882683324189149 0.9707683160363707 1.0770781673008345 0.94633877139161 1.0561415103432399 1.1125219582805979 0.9628802645799671 1.1014812015884903 1.0 18.035497472588634 4.745600986717183 24.519381008603965 1.0227278206528478 1.1983931958329175 0.45985611924545 0.05670655805042108 544.0320103452871 1894626.852772629 0.01278345236313328 0.1267338957562518 55667.40629131362 -4.745600986717183 0.17566537518006964 NGS(ph)YGESSLEAHIWQEEEEVVQANRR ddPTM_BT-474_Trastuzumab_2h_R1 1 NGSYGESSLEAHIWQEEEEVVQANRR 26 1 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 NGS(1)YGESSLEAHIWQEEEEVVQANRR 122.45 6.370699999999999e-05 44783000.0 1482.6 2194.1 1569.0 1915.7 962.95 1957.7 1782.5 1404.7 952.11 896.93 True False 1474.6178463323458 2267.1292921385416 1789.901562007523 2158.2274235788545 1085.5759746481845 1822.368806930103 1696.2736651887406 1509.5258469220691 717.4752481203619 839.6871594995929 1.7561514781423315 2.699968990224437 2.1316290737066947 2.570275607007065 1.2928338398018706 2.170294956059747 2.020125764695063 1.797724104560159 0.8544554242653151 1.0 9.713708115875328 1.360181328341582 2.819014407816187 0.9017966223529044 2.103172339576487 0.5980747673382625 0.37417505373303583 0.1739174986939695 2.3036156078850705 0.30897854839743566 0.0959139576555914 22.91824344554579 -1.360181328341582 1.2013757172235828 NGSEADIDEGLYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 NGSEADIDEGLYSR 14 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;; 340.29 1.6045999999999993e-68 836620000.0 1516380.0 1736960.0 1617040.0 1872990.0 1721180.0 2123090.0 2123030.0 1925690.0 3104000.0 2269250.0 False True 1508215.9785656559 1794773.6635855068 1844705.1764363588 2110110.3419580064 1940362.0707668767 1976325.7855162865 2020330.9281378137 2069394.766255685 2339060.791469057 2124424.5221973294 0.7099409570953745 0.8448281616186303 0.8683317092048759 0.9932620904674374 0.9133589122572952 0.9302875978253811 0.9510015098338961 0.9740966292910579 1.1010326641540202 1.0 21.0186406569688 6.021883746579446 0.42620145609123355 1.00132315259477 6.4334675377181295e-15 0.7834204607810521 0.046603410286071914 7.11710779202704 0.4313848519851653 0.03208359003491003 4.5438388789794875 1051680.3187848304 -6.021883746579446 -1.0013231525947635 NGSFGGQYSECRDPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGSFGGQYSECRDPAR 16 1 O43823 O43823 AKAP8 A-kinase anchor protein 8 0 ; 96.096 0.0032186 481050000.0 362140.0 390330.0 411280.0 381530.0 344780.0 448020.0 438610.0 394880.0 543320.0 415550.0 False True 360190.27847753605 403321.8980905325 469184.6490901554 429831.6588808481 388685.6893288346 417049.43192563916 417392.7586470874 424347.9507600109 409426.06611500256 389029.24322974565 0.925869416620749 1.0367392814538268 1.2060395388144973 1.1048826440715822 0.9991168944060378 1.0720259188313663 1.0729084404603264 1.0907867676914134 1.052430050543042 1.0 18.56951908074551 4.666333790893531 4.058881507686047 1.078908241448995 0.9218759471201433 0.3879349397667907 0.0555099248920234 0.20125084603449367 5.76463114575132 0.013394080167236509 0.07606140199628333 46380.32535852554 -4.666333790893531 -0.15703229432885168 NGSGTLDLEEFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGSGTLDLEEFLR 13 0 Q13938-4;Q13938;K7ES72;A0A499FJ41;Q13938-3 Q13938-4 CAPS Calcyphosin 0 ; 146.79 9.8782e-05 77356000.0 125852.0 122186.0 120497.0 116896.0 117939.0 132976.0 146157.0 123679.0 161489.0 141240.0 False True 125174.42681547164 126252.88714700325 137461.93022130063 131695.02161438318 132957.8325707795 123783.68211183396 139086.82753603978 132908.55500923653 121692.19979173542 132225.94227835233 0.946670711197986 0.954826904399932 1.0395987947049443 0.9959847466025123 1.0055351490018989 0.9361527698645826 1.0518875883164018 1.0051624720468788 0.920335281374346 1.0 17.012645730893485 4.442729605134678 24.21826418004686 0.9964627306125098 0.9487097273788047 0.17254486159860827 0.03813162385314663 171.7218810678648 120924.5149511781 0.009008782537324147 0.02467186290897758 27715.939530382555 -4.442729605134678 -0.04775300323370513 NGSLDSPGKQDTEEDEEEDEKDKGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 0 142.94 1.4737e-07 139790000.0 267440.0 105840.0 82574.0 82278.0 61388.0 172010.0 170800.0 148440.0 458490.0 118390.0 False True 266000.13275537745 109362.82041836892 94199.70145392549 92694.38636384661 69205.39792481734 160119.35356798628 162537.75148063767 159517.34656304715 345501.28295123926 110834.24884122158 2.3999813734150237 0.9867240637416997 0.849915097894277 0.8363334197955211 0.6244044476176249 1.444673963527008 1.4664939148320955 1.4392423662433782 3.117279059166954 1.0 16.75804423126093 1.4365975294663411 7.377388661119995 2.1355182031190822 1.2048604062226818 0.18996018316375374 0.6678929519325306 0.26058874234713414 31.277072834295282 0.39768527080977834 0.15970777090977203 27.327350650029896 -1.4365975294663411 -0.9306577968964005 NGTLPWLRPDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 NGTLPWLRPDSK 12 1 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 ; 113.69 0.0010379000000000002 794660000.0 1583090.0 1394260.0 1225550.0 1216980.0 1323430.0 1919800.0 1707920.0 1722390.0 2533900.0 1876960.0 False True 1574566.8193378346 1440667.1012520331 1398096.7873284374 1371049.5432202306 1491960.965915829 1787088.744723098 1625301.3847120078 1850923.487919202 1909454.2975204387 1757170.8058536956 0.8960806849809085 0.8198788054369628 0.7956521828560614 0.7802596871361782 0.8490699714254482 1.0170261984604663 0.9249535556233983 1.0533543362735065 1.0866640233035048 1.0 20.744823004712025 2.7793979396752713 3.759961394905832 1.0163653790133946 0.8199005994056698 0.7936477256553707 0.04806653273503175 0.10570772795619698 3.1830303997196774 0.016147015205196815 0.01665521229505909 601.7248393916847 -2.7793979396752713 -0.1964647796077248 NGVAAEVS(ph)PAKEENPR ddPTM_BT-474_Trastuzumab_2h_R1 3 NGVAAEVSPAKEENPR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR 266.18 2.2059e-27 1515030000.0 1444530.0 946920.0 872370.0 794360.0 825830.0 1405380.0 1371170.0 1253280.0 2059780.0 1308070.0 True False 1436752.8109823691 978437.6597747728 995192.1132240299 894925.8945524348 930994.5554220998 1308229.3885086738 1304841.2687219335 1346806.117626888 1552174.81863793 1224587.8527049308 1.173254175115977 0.7989934389872894 0.8126751470103185 0.7307976251566417 0.7602513395553226 1.0683017846526823 1.0655350417201468 1.0998035907770891 1.267507933554468 1.0 20.223864846790992 2.6357860108380016 5.224379732756215 1.1071575419095778 0.8434249588680117 0.4676867031473293 0.1307129948121285 0.19854839469864552 8.183886330141037 0.04310383547166369 0.04053694947737135 432.30077174448115 -2.6357860108380016 -0.2637325830415661 NGVAAEVS(ph)PAKEENPRR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGVAAEVSPAKEENPRR 17 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR 194.75 2.9511e-11 1190480000.0 647700.0 511423.0 445206.0 429786.0 457393.0 708410.0 659740.0 633670.0 1072460.0 671250.0 True False 644212.8551662357 528445.4053932686 507887.13500007655 484196.8635330492 515639.2873692898 659439.2841177677 627825.8557484538 680957.6731110611 808166.6032277389 628410.2503139626 1.0251469559008275 0.8409242292423617 0.8082095012713892 0.7705107663204692 0.8205456341803291 1.0493770332172376 0.9990700429134999 1.0836196143695063 1.2860493647644473 1.0 19.261347187781386 2.4032458787872972 1.5034220827311182 1.1173203073135525 0.8460522926598906 0.570387409973481 0.09914953868542994 0.2862051238147375 1.3071783633292788 0.05072449389263258 0.03577363831596426 253.07303812216838 -2.4032458787872972 -0.2712680146536619 NGVMPSHFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NGVMPSHFSR 10 0 P39019;A0A075B6E2 P39019 RPS19 40S ribosomal protein S19 0 87.363 0.012927 456190000.0 256910.0 343010.0 348670.0 378730.0 318360.0 365050.0 398190.0 336150.0 419420.0 361160.0 False True 255526.82510538437 354426.8804960761 397759.7053060314 426677.1791679386 358901.2589324429 339814.9527352675 378928.02846648265 361235.21993511356 316059.56094006175 338110.45959536784 0.7557495423572076 1.0482576638422687 1.1764194038304776 1.26194610979667 1.0614911451185403 1.0050412316198072 1.1207225855123295 1.0683940992757817 0.9347819683493512 1.0 18.367135121762324 1.252874550900829 22.268693923005273 0.9673911087810265 1.0728405744695475 0.07927576830236249 0.1252218992329379 134.72069963612532 209599.21790023957 0.086625973513513 0.03118165589216575 17.90088699291548 -1.252874550900829 0.10544946568852098 NGYGFINR ddPTM_BT-474_Trastuzumab_2h_R1 2 NGYGFINR 8 0 P67809;C9J5V9;P16989;P16989-3;P16989-2;Q9Y2T7 P67809;P16989;P16989-2;Q9Y2T7 YBX1;YBX3;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3;Y-box-binding protein 2 0 ; 107.67 0.0092075 565450000.0 605840.0 569440.0 641330.0 541620.0 455920.0 573340.0 660000.0 574820.0 1018300.0 613230.0 False True 602578.2247551521 588393.4661662513 731623.6894597086 610189.036466451 513978.7095504438 533706.3552971885 628073.278555157 617715.9872768164 767353.6095209203 574093.1363873834 1.0496175386227709 1.024909424747448 1.2743989486856147 1.0628746413974037 0.895288023794843 0.9296511688951059 1.0940268028763702 1.0759856687434726 1.336636097671667 1.0 19.13092528190268 -0.48204263976641304 6.763593056623409 0.9999995848145482 1.0763414304659449 0.033863260462288935 0.128503748656966 0.0 0.0 0.12596583726889543 0.029690432576892377 0.3295773521273154 0.48204263976641304 0.07634184565139668 NGYGFVEFDDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NGYGFVEFDDLR 12 0 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 0 120.86 0.0004718 0.0 180000.0 156600.0 142910.0 142690.0 153530.0 165160.0 171730.0 156850.0 233480.0 153750.0 False True 179030.89999988017 161812.33633330103 163030.48580401207 160754.53936966462 173081.13545639536 153742.8779448209 163422.76382769286 168554.94346816163 175941.98247171222 143937.5433680026 1.243809612216008 1.1241843687688782 1.132647410739774 1.1168353690646664 1.202473874476806 1.068122147616131 1.1353727457323122 1.1710283469075204 1.2223494882213213 1.0 17.135083415135213 -2.244121802948473 2.470407392103613 0.3845890298538762 1.153482312507356 0.4615285981494651 0.05085225834706628 22173343.75569138 16152525.126053639 72041723.89877848 0.011767131915981742 0.005700043854883184 2.244121802948473 0.7688932826534797 NGYGFVEFEDS(ph)RDADDAVYELNGK ddPTM_BT-474_Trastuzumab_2h_R1 4 NGYGFVEFEDSRDADDAVYELNGK 24 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK 314.79 8.393499999999996e-74 574871000.0 653154.0 539660.0 484119.0 466101.0 484046.0 659676.0 608972.0 618510.0 895859.0 622183.0 True False 649637.491436231 557622.2568686409 552278.7471622184 525109.3388095872 545686.388934581 614074.1508302718 579513.697861048 664666.3569301411 675086.5533455784 582474.748262334 1.1153058452306472 0.9573329290791845 0.9481591241677039 0.901514340966914 0.9368412803516344 1.0542502531864368 0.9949164312957437 1.1411075912097561 1.1589971159428425 1.0 19.15183598111983 2.059129748166132 1.8033231337767832 1.1107533047415583 0.9714534103394988 0.32134146781345363 0.0714902057563112 0.35684379063621136 2.196087591182023 0.04166783342809863 0.022107356877102177 114.58552216577802 -2.059129748166132 -0.13929989440205948 NGYGFVEFEDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 NGYGFVEFEDSR 12 0 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;; 188.06 2.2534e-05 2306680000.0 2672260.0 2663600.0 2602510.0 2491260.0 2564240.0 2915600.0 2830920.0 2775350.0 3207250.0 2769030.0 False True 2657872.849075995 2752256.315819801 2968920.7865775614 2806653.26056536 2890780.764558766 2714051.434584157 2693977.5844354066 2982460.7099417443 2416866.212448175 2592308.134714144 1.0252920219953254 1.0617010682348125 1.1452808201386704 1.0826850492736089 1.1151377900827886 1.0469632827362314 1.039219662338665 1.1505039350851025 0.9323221186877482 1.0 21.305805783689685 1.2292810407940526 24.99999388064982 0.9661610179019637 1.085522011089004 0.5385438465708543 0.04335303105849811 159.96625606209858 430947.60443570185 0.03904749778640843 0.010301126285136885 16.954345957467574 -1.2292810407940526 0.1193609931870403 NGYGFVEFEDSRDADDAVYELNGK ddPTM_BT-474_Trastuzumab_2h_R1 5 NGYGFVEFEDSRDADDAVYELNGK 24 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;;; 237.22 1.7884999999999994e-37 1403564000.0 744009.0 875412.0 873058.0 949331.0 895023.0 1082490.0 1139229.0 1019662.0 1614427.0 1126246.0 False True 740003.33821117 904549.5592222712 995976.9776438266 1069516.2072628995 1008998.8738330569 1007660.0142073688 1084120.140992598 1095754.3561787223 1216573.0980634713 1054368.0160522885 0.7018453964317443 0.8579068650138307 0.9446198694198952 1.0143670814933556 0.9569702973454179 0.9557004754186291 1.0282179698998324 1.03925227197368 1.1538410493695577 1.0 20.007947081711254 5.622398110808021 0.5561467902392713 1.0408656812017678 1.6150208407099634e-13 0.8151918761211665 0.049037566159689856 4.068638835719145 0.45845980532347647 0.024760176108508888 3.3944795755271815 419177.64249525254 -5.622398110808021 -1.0408656812016064 NHAAPFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 NHAAPFSK 8 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3;P34932;A0A087WYC1;A0A087WTS8 Q92598-2;P34932 HSPH1;HSPA4 Heat shock protein 105 kDa;Heat shock 70 kDa protein 4 0 83.948 0.017799000000000002 559510000.0 574390.0 626600.0 558120.0 568750.0 560640.0 722690.0 593840.0 246250.0 894610.0 515210.0 False True 571297.5480607285 647456.0022123007 636698.4447339944 640753.691684749 632034.1808263751 672732.1413292714 565113.6905109016 264626.425432163 674145.3526598365 482328.8567065272 1.1844564970914322 1.3423538592181827 1.3200504922752183 1.3284581313670298 1.3103801940072106 1.394758227660003 1.1716356644502919 0.5486431544633351 1.397688202325452 1.0 18.87965760048524 1.988950829637818 23.62495126776504 0.9140045734056264 1.3128754307965453 0.3409119813942366 0.1997998382638506 216.2865464888202 462455.9589130282 0.07459213974490705 0.05140243626232609 97.48792566699214 -1.988950829637818 0.398870857390919 NHACEMCGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NHACEMCGK 9 0 I3L2Z5;A0A087WWR2;P56270-3;P56270;P56270-2;J3QSH4;Q14119 I3L2Z5 MAZ;VEZF1 Myc-associated zinc finger protein;Vascular endothelial zinc finger 1 0 98.943 0.0056723 41867000.0 99891.0 106720.0 101990.0 83434.0 77153.0 111480.0 97037.0 37915.0 129520.0 61812.0 False True 99353.19795493352 110272.11068639763 116349.30548702824 93996.73584531923 86977.97722834133 103773.64999569292 92342.94959266196 40744.40982846889 97601.5314790825 57867.10524008438 1.716920131786925 1.9056095899197054 2.0106294414470454 1.6243552438874713 1.503064251572272 1.7933098530701896 1.5957762049707 0.7041031283563387 1.6866496271784166 1.0 15.82045585569097 1.9382205126849026 7.86901934925399 1.107370334450887 1.7542462525611655 0.5371373410961051 0.26103064515581065 0.22471778915451512 26.0516395866572 0.10801295751941206 0.06787260066149323 86.74021867496545 -1.9382205126849026 0.6468759181102786 NHAVVCQGCHNAIDPEVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 NHAVVCQGCHNAIDPEVQR 19 0 Q9UGI8-2;Q9UGI8 Q9UGI8-2 TES Testin 0 ;;; 240.61 1.4424e-24 2292620000.0 502752.0 445595.0 435826.0 473710.0 490713.0 583764.0 460989.0 79788.0 502445.0 274077.0 False True 500045.2390929989 460426.3602071344 497186.5125324991 533681.6374294194 553202.3918661769 543409.7687126441 438689.20092100505 85742.18571525453 378624.16216806363 256585.17121087512 1.9488469919488667 1.7944386966491213 1.9377055586890686 2.079939518370732 2.156018562006166 2.1178533667716968 1.7097215667247867 0.33416656664381866 1.4756276069316978 1.0 17.96907826981096 1.928196334462668 6.40861329723037 0.889567994665664 1.996837134709472 0.7502073377043694 0.2755816380076632 0.10438036591108371 7.530682155279615 0.11480386474093214 0.07071600102208873 84.76105125932054 -1.928196334462668 1.107269140043808 NHDDWSHDYDNRR ddPTM_BT-474_Trastuzumab_2h_R1 4 NHDDWSHDYDNRR 13 1 J3KPD3;Q9Y580;G3V1T9 J3KPD3 RBM7 RNA-binding protein 7 0 ;;; 168.89 1.1977e-05 1343710000.0 1180260.0 1345770.0 1147690.0 1281970.0 1284360.0 1234050.0 1344640.0 488915.69999999995 1363470.0 803217.0 False True 1173905.6112992128 1390563.1409148553 1309274.7760996902 1444267.2705566548 1447915.6330018602 1148743.0281412348 1279594.6261763743 525401.07219762 1027461.0880619563 751955.0033913285 1.5611381080049744 1.8492637653096187 1.7411610670782707 1.9206831047642312 1.925534940883083 1.5276752238636437 1.701690420843512 0.6987134467196217 1.3663863973616655 1.0 19.520286808777982 1.7571293355987525 24.9999999999358 1.009404823289804 1.7556064283843735 0.7428277191967081 0.1954065699263245 3.4335369699302865 4627.339388762568 0.08609636394016876 0.047745395479537364 57.16488519097461 -1.7571293355987525 0.7462016050945695 NHDEESLECLCR ddPTM_BT-474_Trastuzumab_2h_R1 4 NHDEESLECLCR 12 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 Q04637-9;A0A0A0MSA7 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 0 ;;; 206.18 9.3111e-08 2654560000.0 2142690.0 2222950.0 1768560.0 2096120.0 1777660.0 2310150.0 1998550.0 810810.0 2412640.0 1504330.0 False True 2131153.9951152387 2296939.54694835 2017557.8754009057 2361488.577079974 2004034.4639836862 2150454.76800816 1901872.5012975931 871316.7594097544 1818077.1997196835 1408322.3714782891 1.5132572188555147 1.6309756867224203 1.4325966243674122 1.6768096743369663 1.4229941273176605 1.526962016339248 1.3504525240916494 0.6186912720097955 1.2909524385466393 1.0 20.425546180642485 1.9467608609930842 6.514035303141249 0.9370840555020863 1.52817616525893 0.6901406665143911 0.16852237377660073 0.11288228890589126 10.875731570371352 0.06808061019379573 0.042389832839871286 88.46283657789716 -1.9467608609930842 0.5910921097568438 NHET(ph)DGGSAHGDDDDDGPHFEPVVPLPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 NHETDGGSAHGDDDDDGPHFEPVVPLPDK 29 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NHET(0.5)DGGS(0.5)AHGDDDDDGPHFEPVVPLPDK 57.679 0.089132 107500000.0 57469.0 88871.0 65758.0 85440.0 75728.0 85148.0 71323.0 51846.0 60043.0 62248.0 True False 57159.59328940617 91829.017511346 75016.15482121779 96256.69523963943 85371.51192497824 79261.91917683209 67872.8340096811 55715.01178865357 45246.20718497955 58275.27934680597 0.9808548998837026 1.575779962629713 1.2872723333471139 1.651758624215247 1.4649695871369066 1.3601293732996302 1.1646934132354556 0.9560659753698337 0.7764219698667041 1.0 15.83059639458417 1.9495897040848962 1.908320283506804 0.8854791721325205 1.4107009184588957 0.5903846562494188 0.17785038687719767 0.21753989704104346 1.4686164556176624 0.10462090511816682 0.05124316027992649 89.04093342129771 -1.9495897040848962 0.5252217463263752 NHET(ph)DGGSAHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 33 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NHET(0.566)DGGS(0.434)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.5)DGGS(0.5)AHGDDDDDGPHFEPVVPLPDKIEVK 123.01 5.0812e-08 157725000.0 297860.0 199480.0 156349.0 200769.0 208342.0 285454.0 212630.0 49413.0 284570.0 95619.0 True False 296256.35485535697 206119.57121179363 178361.5801901303 226186.3348146908 234873.11876021838 265721.236866438 202344.2745745202 53100.44897412989 214441.5365426385 89516.51355645541 3.3095162343260487 2.3025871207752093 1.9924991837136614 2.526755408900524 2.623796542434496 2.968404669813861 2.260412816981614 0.5931916566504907 2.395552820624505 1.0 16.449866227606815 1.9352844402291767 7.556464871094929 1.3121282076370029 2.577062153030264 0.5341003388075867 0.5385406320820495 0.21787637833205714 22.685567599525505 0.2211825512983482 0.13848086922047848 86.15578428803968 -1.9352844402291767 1.2649339453932613 NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 NHETDGGSAHGDDDDDGPHFEPVVPLPDK 29 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NHET(0.039)DGGS(0.961)AHGDDDDDGPHFEPVVPLPDK 172.51 2.9674e-12 212560000.0 342560.0 264560.0 228460.0 215940.0 219050.0 315130.0 215110.0 29576.0 223240.0 88085.0 True False 340715.6950219943 273365.7196701028 260625.18219008186 243277.98185917313 246944.71908892956 293345.8048362279 204704.30749999976 31783.11130388493 168225.4932627421 82463.33988663733 4.131723205613276 3.3149969434405606 3.1604975319743813 2.950134959287464 2.99460001775826 3.5572874593666897 2.482367410553678 0.3854211016383437 2.040003394162816 1.0 16.33146527323129 1.9574552815185242 4.794526352930705 1.1246840614991858 3.293117197980554 0.8011282443260758 0.49172014915009876 0.08367304401140055 4.365972040781233 0.21326982147110293 0.1303807423741869 90.66826003845514 -1.9574552815185242 2.168433136481368 NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 33 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NHET(0.189)DGGS(0.811)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.169)DGGS(0.831)AHGDDDDDGPHFEPVVPLPDKIEVK 68.48100000000001 0.0021767 2586290000.0 353600.0 233678.0 169818.0 223246.0 197115.0 315770.0 249666.0 38588.0 285910.0 75673.0 True False 351696.25688865344 241455.83096866624 193726.89831548353 251508.92071007166 222216.42685786058 293941.56314262596 237588.70176326056 41467.63250589367 215451.31149771856 70843.48435308516 4.964412184129639 3.408299763535714 2.7345760881825814 3.5502054000696353 3.1367235658586474 4.1491686331747335 3.3537128210565466 0.585341515660329 3.0412297399702344 1.0 16.11234755063553 1.8424918320327925 7.204826140328451 1.5533754051158322 3.583893998690848 0.5760879328736145 0.8156746962402394 0.17717033842718358 10.61288055663444 0.33857170798202335 0.207988445988476 69.58118681379077 -1.8424918320327925 2.0305185935750156 NHFTVAQSEAFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 NHFTVAQSEAFDR 13 0 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 0 ;;; 230.69 3.663e-12 1490540000.0 1928310.0 2024870.0 1846260.0 1877360.0 1898040.0 2304280.0 2204070.0 1338450.0 2323970.0 1698600.0 False True 1917928.1932153834 2092266.5738902388 2106197.360020399 2115033.5835099425 2139744.1434355266 2144990.547291665 2097450.7137349476 1438331.935511385 1751258.7331025589 1590193.8937553766 1.2060970682550132 1.3157304792242506 1.3244909116374715 1.3300476072858718 1.3455869449871556 1.3488861677276909 1.3189905469839538 0.904500980138116 1.1012862896654785 1.0 20.60077125464815 1.7578031255773792 14.265578805718759 1.0028932442205907 1.3167090486894344 0.8574548337318926 0.05807424501499775 0.11265542534295107 83.65403412568665 0.025526131226498612 0.01408550991952205 57.253642987129226 -1.7578031255773792 0.3138158044688437 NHGIHTAHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NHGIHTAHK 9 0 P24666-2;D3YTI2 P24666-2 ACP1 Low molecular weight phosphotyrosine protein phosphatase 0 ; 132.01 0.00018335 30361000.0 36889.0 30585.0 27543.0 32473.0 27432.1 29902.0 33525.0 1781.58 30954.0 10077.2 False True 36690.39372275318 31603.00323597709 31420.81499195232 36584.078470468296 30925.415332204648 27834.945121736688 31903.267672063146 1914.5305462799333 23325.801462349595 9434.064468475024 3.8891396010021144 3.3498820515359036 3.330570306886122 3.8778703063476048 3.2780585118477155 2.950472218496095 3.381709736950756 0.20293803934428795 2.4725081687002834 1.0 13.203663744341492 1.7562076752115372 24.999999999819227 1.2021115376782252 3.4215382438486883 0.7547112600499746 0.5777093022034793 2.985740017200823 4234.276053404404 0.2470867352721521 0.13702334721692677 57.04369842453076 -1.7562076752115372 2.219426706170463 NHKEDEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NHKEDEAK 8 1 O14617-5;O14617-2;O14617;O14617-3;O14617-4 O14617-5 AP3D1 AP-3 complex subunit delta-1 0 ; 104.05 0.0027972 44769000.0 68380.0 66081.0 67900.0 69994.0 70756.0 65897.0 75135.0 52416.0 85232.0 65332.0 False True 68011.84967773227 68280.466138192 77459.72980261996 78855.23322335353 79766.35719633094 61341.69549485263 71500.43300642686 56327.54808305489 64227.71565028689 61162.45582646071 1.1119869004394736 1.1163787525459667 1.266458790052517 1.2892751305979835 1.3041719158997802 1.002930550547226 1.1690248869224382 0.9209497447727714 1.050116689763462 1.0 15.900358715246284 2.72702021491328 24.993385545142107 1.0269431747107562 1.2187181749509501 0.5617676221361372 0.08347819917603232 579.7166782415122 1255507.158188335 0.028529042528490582 0.02711103874519075 533.3597209690197 -2.72702021491328 0.1917750002401939 NHKPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 7 NHKPSR 6 1 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 NHKPS(1)R;NHKPS(1)R;NHKPS(1)R;NHKPS(1)R;NHKPS(1)R;NHKPS(1)R;NHKPS(1)R 70.332 0.055199 35659860000.0 20194730.0 14435310.0 11635750.0 11244810.0 12693240.0 10996240.0 13838660.0 4057779.0 18472400.0 10660140.0 True False 20086003.817525424 14915780.567020819 13273962.46024795 12668401.79304365 14309648.875272157 10236095.811164673 13169231.146985015 4360591.073964258 13920124.537478402 9979800.738594985 2.0126658180505164 1.4945970323171753 1.3300829152743923 1.269404282196839 1.43386118120899 1.0256813817512924 1.3195885861784307 0.43694169735278376 1.3948299071388233 1.0 23.25057957964515 7.9999999999987335 0.3213310276571036 0.9180464966056858 11.07395749169935 0.5347297291630144 0.26214981161830636 40.82105836656471 0.5843907044321747 0.24313441632342528 243.91729932055574 99999999.99970837 -7.9999999999987335 10.155910995093663 NHLEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 NHLEGK 6 0 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;; 128.75 0.016489 169422000.0 1128280.0 901650.0 792280.0 812680.0 841020.0 767090.0 978730.0 207483.0 1168260.0 623680.0 False True 1122205.4658436938 931660.8751910661 903826.1373787886 915565.204674042 948118.9118839155 714062.8738356305 931385.0907883181 222966.43503732624 880357.9768819712 583876.2084406883 1.9219921100068087 1.5956479502379084 1.547975622765252 1.5680810271738406 1.6238354948833782 1.2229696355373365 1.5951756165501143 0.38187278709777356 1.5077818964966447 1.0 19.155303000391775 1.7720504142404505 24.999999999999698 0.9039561080333184 1.5686749818307923 0.4695656224576463 0.2992737222874364 24.937380114897763 18624.519090270216 0.13094104611111274 0.07264429456527007 59.16303084569967 -1.7720504142404505 0.664718873797474 NHLS(ph)PQQGGATPQVPS(ph)PCCR ddPTM_BT-474_Trastuzumab_2h_R1 1 NHLSPQQGGATPQVPSPCCR 20 0 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 2 NHLS(0.997)PQQGGAT(0.003)PQVPS(1)PCCR 110.17 9.8621e-05 215120000.0 67620.0 64837.0 57232.0 70949.0 67926.0 86300.0 68144.0 23362.0 77664.0 43168.0 True False 67255.94143328826 66995.06035020585 65289.768130538236 79931.13612543505 76575.9734710552 80334.28412834855 64847.61438464039 25105.39106983228 58524.747844282436 40412.98128201584 1.6642162814951194 1.6577609031783875 1.6155642582991718 1.9778579453875915 1.894836041337347 1.9878336509684345 1.6046233741606732 0.6212209610233437 1.4481670489953806 1.0 15.302531163194791 1.918210065250908 6.372350976672166 1.002960987891321 1.7973751107586458 0.7097843493082991 0.22218619695163594 0.1205301293326171 7.667399300326064 0.09500846236005137 0.058318686910628255 82.83427305046759 -1.918210065250908 0.7944141228673247 NHLS(ph)PQQGGATPQVPSPCCR ddPTM_BT-474_Trastuzumab_2h_R1 4 NHLSPQQGGATPQVPSPCCR 20 0 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 1 NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(0.999)PQQGGAT(0.001)PQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR 201.98 7.7667e-22 1931300000.0 523294.0 531360.0 452368.0 523729.0 528468.0 576691.0 560775.0 146764.3 612520.0 354930.0 True False 520476.6432474292 549045.9963860973 516057.4823468574 590033.0377008565 595765.2673247597 536825.7085545938 533648.1708814669 157716.59732001493 461572.65334749536 332278.0635291388 1.5663888182067323 1.652369074728128 1.5530892315483902 1.7757207064291023 1.792972009638893 1.615591781332015 1.6060288940340148 0.4746524511576255 1.3891156353961904 1.0 18.342031526171642 1.7656577580208066 24.99999999999939 0.9106363911844243 1.6567782321521796 0.6775331218655771 0.21975421373242154 8.962262382388108 8273.769672645083 0.09424548899438409 0.052268959890016835 58.298550656203105 -1.7656577580208066 0.7461418409677553 NHLVTLPEAIHFLTEIEVLDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 NHLVTLPEAIHFLTEIEVLDVR 22 0 Q13045-3;Q13045;Q13045-2;J3KS54;J3QQQ2 Q13045-3 FLII Protein flightless-1 homolog 0 262.98 1.2595999999999998e-37 118820000.0 24785.0 30984.0 20009.0 21401.0 25913.0 26944.0 24372.0 5092.2 26761.0 17968.0 False True 24651.56031387237 32015.28370977648 22826.09327865425 24110.36440570605 29212.866951615764 25081.424699353654 23193.033249918637 5472.2058216676605 20166.110129028155 16821.266856821265 1.4654996275667436 1.9032623394113637 1.356978250981016 1.4333263131087508 1.7366627139482975 1.4910544439274962 1.3787923018719324 0.3253147261883312 1.1988460976618125 1.0 14.037998742647124 1.928273506572343 7.006429526624807 0.7811668689079899 1.5616203387729954 0.6145047659127074 0.2550589382638823 0.1494357848813506 12.49240258559612 0.10495694199426475 0.0651941454399176 84.77611424220524 -1.928273506572343 0.7804534698650055 NHS(ph)GS(ph)RT(ph)PPVALNSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 NHS(0.998)GS(0.936)RT(0.793)PPVALNS(0.118)S(0.155)R;NHS(0.975)GS(0.908)RT(0.97)PPVALNS(0.083)S(0.064)R 120.32 0.00090621 1165560000.0 1042410.0 1179730.0 747570.0 1002470.0 1026160.0 1287280.0 971410.0 251860.0 1132880.0 580640.0 True False 1036797.7803826384 1218996.5998881552 852821.358005075 1129382.599214436 1156835.393473163 1198293.3635311762 924419.1871534323 270655.0721191659 853696.9038142611 543583.058089086 1.9073401294503207 2.2425213253949097 1.56888877479568 2.0776633532043327 2.1281667562265585 2.2044347146205427 1.7006033823113236 0.4979093223961538 1.5704994684995344 1.0 19.05214096661322 1.943964467182174 6.3804598024463 0.9904155773262745 2.0140873238695733 0.6896971441727927 0.29923780093572055 0.11647087483009402 10.32230823928457 0.1229652870860318 0.07629024963987731 87.89506004917541 -1.943964467182174 1.023671746543299 NHSDSSTSESEVSSVS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NHSDSSTSESEVSSVSPLK 19 0 Q9NY27-2;Q9NY27;Q9NY27-3;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 NHSDSSTSESEVSS(0.052)VS(0.947)PLK;NHSDSSTSESEVSS(0.004)VS(0.996)PLK 183.42 1.7472e-14 1418310000.0 1682030.0 1141380.0 1011370.0 998390.0 939350.0 1755710.0 1517120.0 433160.0 2115000.0 1092480.0 True False 1672974.1373711 1179370.1433212212 1153762.105014371 1124786.0716327664 1058970.6545363439 1634341.9001967884 1443731.1096387887 465484.59874191217 1593786.5895480188 1022756.991080816 1.635749402801105 1.1531284103713646 1.1280901671423562 1.0997588688630027 1.0354078864982956 1.5979767573817016 1.4116071776865597 0.4551272714841121 1.558323828091126 1.0 19.964031968161624 4.739246216282431 4.940886460508139 1.128813912634261 1.661880837098023 0.16861625390011337 0.31057734272606624 0.3030260923664642 22.627843574113225 0.07673480555933458 0.5544192269678146 54858.788987027794 -4.739246216282431 0.533066924463762 NHSGS(ph)RT(ph)PPVALNSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 NHS(0.127)GS(0.873)RT(1)PPVALNSSR 83.436 0.01794 1102000000.0 462630.0 453200.0 315610.0 450500.0 434650.0 503850.0 407830.0 86873.0 447720.0 174330.0 True False 460139.25148302515 468284.4880348147 360045.14466870227 507533.2538091941 490000.1011276111 469020.035435323 388101.7048381058 93355.90439215566 337385.4051406331 163204.11014857786 2.8194097015333943 2.8693179823014114 2.2061034145581515 3.1098068139775745 3.002375986006262 2.873824899436272 2.378014282145134 0.5720193217386882 2.0672604680941182 1.0 17.31631786517945 1.917471288503958 5.40065926754444 1.2093438011673303 2.7980616384790538 0.7512807350183971 0.4117442859686675 0.1017268421745893 4.9066657695162466 0.176059258369096 0.10587487156716265 82.69348375505935 -1.917471288503958 1.5887178373117234 NHSGSRT(ph)PPVALNSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 NHS(0.007)GS(0.178)RT(0.815)PPVALNSSR 107.78 0.0016144000000000002 118800000.0 25188.0 43651.0 44213.0 60083.0 50984.0 44882.0 43398.0 25359.0 41969.0 25967.0 True False 25052.390606649882 45103.897147413256 50437.80609371485 67689.50163955116 57476.510194156566 41779.412980863715 41298.67294354052 27251.41735039281 31626.302305787638 24309.76382853281 1.0305484982641189 1.855381955396621 2.0747962197195466 2.784457394032877 2.3643384855386933 1.7186268560876128 1.698851261363038 1.1210070794026936 1.3009711870860412 1.0 14.569248257076536 1.996611563753961 1.759509124604277 1.1294179222441718 2.042781027835537 0.42873010575252335 0.4285408208524605 0.3603824285904605 2.0812556751448272 0.28506258821576386 0.14195940134261165 99.222819507975 -1.996611563753961 0.9133631055913654 NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NHSVNEEEQEEQGEGSEDEWEQVGPR 26 0 Q14694;Q14694-3;Q14694-2;H3BNA1 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR 294.1 1.6162999999999995e-70 5294400000.0 1053920.0 971260.0 723560.0 1032610.0 1054050.0 1221430.0 947880.0 300937.0 932220.0 626070.0 True False 1048245.8118215201 1003587.8019609309 825430.9587037358 1163338.3201241116 1188277.0196561804 1136995.4190369488 902027.4231467611 323394.4470671226 702486.8721080171 586113.676594506 1.7884684382595175 1.7122750108683236 1.4083120590185407 1.984833943619012 2.027383197335407 1.9398889062668334 1.5389973978901286 0.5517606225231598 1.1985505545437427 1.0 19.16082097654882 1.9235912077369637 5.3304635099651945 0.8927934781315067 1.8013152082935966 0.7643758263950725 0.22152351779737858 0.1019215103870923 5.059122887851981 0.10187002694403911 0.06132135362816385 83.86701922537722 -1.9235912077369637 0.9085217301620899 NHTHQQDIDDLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 NHTHQQDIDDLKR 13 1 Q6V3B1;G3V563;G3V2R5;P61244-2;G3V570;P61244-3;P61244-4;P61244;G3V5L1 Q6V3B1;P61244-3 MAX Protein max 0 145.49 1.7012999999999998e-05 159140000.0 184920.0 157520.0 128020.0 139790.0 141770.0 170840.0 170420.0 33103.0 201750.0 83057.0 False True 183924.41126654367 162762.95797714923 146044.1032302122 157487.3996670082 159823.56916337632 159030.23291410282 162176.13353237868 35573.31395362801 152031.41581149536 77756.23115132483 2.3653977120958998 2.093246490565998 1.8782302211380248 2.0253990880874233 2.055443876289948 2.045241012319734 2.085699514123319 0.457497919162224 1.9552312857810754 1.0 16.24667067268213 1.7649006495557307 24.999999999506343 1.0967415281137785 2.0670595758788117 0.5908511689382421 0.3581952047518185 10.3834475046641 9861.529408133807 0.15257950966519523 0.0846199833223982 58.1970069408921 -1.7649006495557307 0.9703180477650333 NHVQPYIPSILEALMVPTSQGFTEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NHVQPYIPSILEALMVPTSQGFTEVR 26 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 ; 108.64 0.0025626 217910000.0 189145.0 182595.0 139835.0 192748.0 166497.0 210949.0 181883.0 52456.0 197842.0 124245.0 False True 188126.66433598512 188672.56419399165 159522.55253239124 217149.87703710247 187699.40604496453 196366.59215053287 173084.62442946614 56370.53308617078 149086.49004697832 116315.57772850388 1.617381506500341 1.6220747717419128 1.3714633555338411 1.8669027939143228 1.6137082384878838 1.6882226438222985 1.4880605660014758 0.48463442461462164 1.2817413880277166 1.0 16.827684799164267 1.9009521533933216 6.801392268831915 0.8843728986984386 1.6245366847751714 0.6864571905386874 0.21422309930745942 0.12473711692536896 7.344095640400044 0.08740250010654343 0.05387250555305977 79.6071641670009 -1.9009521533933216 0.7401637860767328 NHYNEEMSNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 NHYNEEMSNLR 11 0 P15924;P15924-3 P15924 DSP Desmoplakin 0 ;; 184.31 4.9613e-06 1003180000.0 644390.0 640090.0 629250.0 655430.0 609560.0 779470.0 802950.0 272399.0 774000.0 525550.0 False True 640920.6758384595 661395.0087074239 717842.9304609521 738407.3707972484 687183.8528548189 725587.0735750144 764108.2409331267 292726.79659409495 583258.0710686367 492008.9490540074 1.3026606062161405 1.3442743469993736 1.459003808449336 1.5008006911601806 1.3966897435017738 1.4747436504358526 1.5530372819484044 0.5949623419592772 1.1854623217526334 1.0 18.90832503113633 1.7512760690468538 24.99999999999793 0.9010100869441808 1.4334292144131997 0.6979915344337433 0.15230961160386333 1.7934138950467016 3531.5800030597657 0.06565787462279335 0.036410738986955404 56.39960586692441 -1.7512760690468538 0.5324191274690189 NIDDASQMDLFHRDS(ph)DDDQTEEQLDESEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NIDDASQMDLFHRDSDDDQTEEQLDESEAR 30 1 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 NIDDAS(0.002)QMDLFHRDS(0.998)DDDQTEEQLDESEAR;NIDDAS(0.002)QMDLFHRDS(0.998)DDDQTEEQLDESEAR 221.47 7.235300000000002e-35 294540000.0 152151.0 230118.0 203547.0 227223.0 219531.0 198015.0 201336.0 177932.0 167439.0 234035.0 True False 151331.83592156533 237777.33852073175 232204.6483377596 255989.40850230062 247486.97158781937 184326.68912717162 191596.60850178997 191210.18936038864 126175.90201765059 219098.68593255608 0.6907017049301197 1.085252234666188 1.0598176221341549 1.1683749147683178 1.1295684888954647 0.841295274513476 0.8744763013355913 0.8727126251192935 0.5758861650885967 1.0 17.741221306075445 2.7161306997844394 20.0482986752235 0.8325888655541427 1.0396993124765173 0.27437640978359146 0.15693185830786904 83.15077122924664 74320.39128855511 0.050250633763520916 0.04746441876068697 520.1525115140483 -2.7161306997844394 0.20711044692237457 NIDDGTSDRPYSHALVAGIDR ddPTM_BT-474_Trastuzumab_2h_R1 8 NIDDGTSDRPYSHALVAGIDR 21 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 ;;;;;;; 228.6 9.6819e-26 38262750000.0 11992210.0 13917920.0 11733370.0 12620520.0 12012380.0 13176610.0 13058960.0 11619810.0 13990680.0 13529710.0 False True 11927645.273819791 14381169.55363969 13385326.507719696 14218276.53798893 13542085.39004556 12265741.965103569 12427248.214728292 12486939.226399621 10542864.379507191 12666232.324432505 0.9416884964925191 1.1353944239518772 1.0567725401578254 1.1225340080461506 1.0691486657736082 0.9683812558406645 0.9811321864637501 0.9858447963498161 0.8323599401513071 1.0 23.594484110930996 2.713565028514868 4.273755968813099 0.9563397203257125 1.0723772522440966 0.4209002153859973 0.06525904665910266 0.20328197165770767 8.97046344043272 0.02055222471653105 0.02007993741979537 517.0886777675729 -2.713565028514868 0.11603753191838417 NIDDGTSDRPYSHALVAGIDRYPR ddPTM_BT-474_Trastuzumab_2h_R1 4 NIDDGTSDRPYSHALVAGIDRYPR 24 2 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 ;;; 263.83 2.0296e-44 5272100000.0 788680.0 1280220.0 1227300.0 1404290.0 1216480.0 1111280.0 1379980.0 1165940.0 1716520.0 1242860.0 False True 784433.8345105853 1322831.3487906668 1400093.1721171662 1582072.970014902 1371391.5173581436 1034459.8292717392 1313225.0953644633 1252948.363323357 1293506.6461895837 1163539.6107340201 0.6741788825012364 1.1369027204464122 1.2033051210297139 1.3597070142002727 1.1786375854389692 0.8890628387108791 1.1286466599413956 1.0768420359431796 1.1116997085931382 1.0 20.15008889501097 4.739455106924042 24.31800671250883 1.1255940881530926 0.6741786843884935 0.5646179200826947 0.1175114506410974 39.702939601898066 1079125.347615677 0.02956798341731375 0.17974972841809467 54885.18177922246 -4.739455106924042 -0.4514154037645991 NIDEHANEDVER ddPTM_BT-474_Trastuzumab_2h_R1 2 NIDEHANEDVER 12 0 P61026 P61026 RAB10 Ras-related protein Rab-10 0 ; 190.03 7.1592999999999985e-06 1850240000.0 1820170.0 2363300.0 2483100.0 2150300.0 2809600.0 2965800.0 2146100.0 1972730.0 2407300.0 2248400.0 False True 1810370.4069598983 2441961.0118549815 2832698.8965078876 2422527.7595247766 3167385.906196102 2760781.2267422457 2042284.9441018524 2119945.1299199653 1814053.171167349 2104905.1870479165 0.8600721866712217 1.1601287444589268 1.345760803830165 1.150896379766311 1.5047641697526013 1.3115941011168208 0.9702503260805359 1.0071451878044644 0.8618217971667973 1.0 21.005323819596168 2.2274399512129395 24.44009094637293 0.9657598890472411 1.2345999591396815 0.3890699948711901 0.16056315907400845 176.55147431968746 388006.8629849054 0.06201345968935793 0.04624554146930981 168.82624116230306 -2.2274399512129395 0.2688400700924404 NIDLATPLHHTWTYQALVHDVLDFHLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 NIDLATPLHHTWTYQALVHDVLDFHLNR 28 0 Q8WVM8;Q8WVM8-2;Q8WVM8-3 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 0 ;; 214.61 1.164e-34 838772000.0 138835.3 143595.1 106068.9 140157.5 122741.3 157353.6 103081.6 61802.0 154098.6 113948.2 False True 138087.82617085188 148374.57609842892 121002.47915259388 157901.42512932778 138371.6770103175 146476.11600253198 98095.1491980474 66413.97906419713 116123.06484544878 106675.92832003787 1.2944609748937488 1.3908908826487187 1.134299753076205 1.4801973380124573 1.2971218454756672 1.3730943644857703 0.919562179986404 0.6225769966111654 1.0885592155061319 1.0 16.702875139715818 2.184589251770894 5.316710087896866 0.8427460711199544 1.3281858989051214 0.6677235944853626 0.14308188260521224 0.09958901066171232 5.916741648710332 0.05253835709627009 0.038946413957951356 152.96400701399486 -2.184589251770894 0.48543982778516703 NIDNPALADIYTEHAHQVVVAK ddPTM_BT-474_Trastuzumab_2h_R1 4 NIDNPALADIYTEHAHQVVVAK 22 0 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 ;;; 257.96 2.1236e-37 2294160000.0 1904830.0 1734670.0 1633880.0 1591230.0 1491640.0 2052960.0 1876570.0 482380.0 2332430.0 1555080.0 False True 1894574.6069265094 1792407.4423198432 1863916.1020604519 1792679.5548475133 1681591.5123570468 1911043.7073480217 1785793.1399064448 518377.6450760075 1757633.8794607497 1455833.463029031 1.301367673596832 1.2311898907657548 1.2803085994344143 1.2313768026169936 1.1550713423349261 1.3126801628613982 1.226646580983854 0.356069329521704 1.2073042172033797 1.0 20.473413900270295 1.908045169585068 14.15636139184347 0.78470801032157 1.2488743839947614 0.4226317245986906 0.2063740306746095 1.163618653727032 177.36552970639036 0.07989708501540843 0.051353107482349024 80.91800550407724 -1.908045169585068 0.46416637367319136 NIDPKPCTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NIDPKPCTPR 10 1 K7EQ55;K7EK33;Q96EP5;Q96EP5-2 K7EQ55 DAZAP1 DAZ-associated protein 1 0 104.79 0.0024026 376890000.0 768340.0 681020.0 639550.0 633610.0 617460.0 830080.0 710780.0 675650.0 1170500.0 936200.0 False True 764203.3428105987 703687.339014716 729593.0809317469 713824.9610345026 696089.8710278504 772698.5233981401 676396.8559567191 726070.4338811823 882045.9588964331 876450.9144788559 0.871929426036368 0.802882771173938 0.8324403213904663 0.8144494451910614 0.7942143245315119 0.8816221315230097 0.7717452794933869 0.8284211036654678 1.0063837510180522 1.0 19.741313769733203 1.2435900304511924 8.71350312018808 1.0038076667461442 0.8223483868749801 0.8370261908540578 0.03149042356398858 0.03424553586867091 26.955420053841095 0.02209273853604302 0.007079851583241566 17.522256377975538 -1.2435900304511924 -0.18145927987116406 NIEDVIAQGIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NIEDVIAQGIGK 12 0 P05387;H0YDD8 P05387 RPLP2 60S acidic ribosomal protein P2 0 ; 186.81 2.6247e-05 232180000.0 827410.0 790210.0 636070.0 621640.0 620750.0 848180.0 821470.0 754910.0 1160270.0 826410.0 False True 822955.3164938926 816511.6621579669 725623.12718045 700339.5602618147 699798.8330264927 789547.3130009566 781732.3577798567 811245.2175553078 874337.0053214574 773667.8062748029 1.0637062959313355 1.0553775865244495 0.9379001184944128 0.9052199853499625 0.9045210713833525 1.0205249676894443 1.0104237909858036 1.0485704729804377 1.130119410721476 1.0 19.561354716368303 1.9813483325826124 1.7968668771132437 1.06656859547782 0.9744414731570397 0.25868389886824994 0.059848891166625645 0.4955502138106448 2.978146872963473 0.04018542097374699 0.019870259931351573 95.79621115201996 -1.9813483325826124 -0.09212712232078024 NIEDYIHR ddPTM_BT-474_Trastuzumab_2h_R1 6 NIEDYIHR 8 0 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 ;;;;; 195.17 0.00016151 2659450000.0 2655000.0 2987170.0 2661930.0 2687880.0 2522620.0 2979190.0 2877680.0 2517410.0 3529290.0 2964290.0 False True 2640705.774998228 3086596.1476676064 3036706.6060896665 3028165.332405454 2843860.7042598333 2773245.6075589163 2738475.624594859 2705271.917348961 2659543.7695630905 2775106.47434365 0.9515691738000036 1.1122442242140016 1.0942667008147455 1.0911888824451883 1.0247753484602584 0.9993294431035574 0.9868002002490895 0.9748353594212251 0.9583573798522842 1.0 21.404111694682666 2.8515908481890557 2.1861254455073116 0.9795790556073994 1.0676685568965476 0.42550423831415307 0.042582457914898335 0.27559010952321483 2.5944822361285684 0.014439403552412793 0.015401662028340436 710.543790047865 -2.8515908481890557 0.08808950128914816 NIGRDT(ph)PTSAGPNSFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 NIGRDTPTSAGPNSFNK 17 1 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 NIGRDT(0.997)PT(0.002)SAGPNSFNK;NIGRDT(0.895)PT(0.102)S(0.002)AGPNSFNK 136.96 1.3875e-05 2116290000.0 749330.0 440160.0 426590.0 507720.0 534500.0 580610.0 527630.0 495300.0 755300.0 556230.0 True False 745295.6905383902 454810.45951766084 486650.1640132495 571997.299942296 602565.4067702943 540473.7973089276 502106.52115766326 532261.8010824386 569166.4355014752 520730.92518753844 1.4312491432498962 0.873407814897614 0.9345520699351303 1.09845079728325 1.1571531046543542 1.037913769216374 0.9642341118435251 1.022143635680457 1.0930144686461496 1.0 18.99017856253593 2.489868208421824 23.836474032933257 1.0173625382491687 1.0792958180443644 0.058371519262523486 0.1423062179938764 1303.5148003769427 2437545.476307798 0.04663262879652924 0.04203544524477731 308.93577896486516 -2.489868208421824 0.061933279795195695 NIHESCMSQIGWNR ddPTM_BT-474_Trastuzumab_2h_R1 1 NIHESCMSQIGWNR 14 0 P11413;P11413-3;P11413-2;E9PD92 P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 169.54 3.3153e-06 153720000.0 75698.0 111010.0 104810.0 112710.0 119060.0 129640.0 115800.0 114570.0 111040.0 117900.0 False True 75290.45037883849 114704.90074303804 119566.33697514873 126979.07444358326 134221.5852760919 120678.29193973464 110198.31160104129 123119.79517467188 83675.67985976936 110375.52106073155 0.6821299655510725 1.0392240928124303 1.083268607260845 1.1504278595769073 1.2160448619965256 1.0933428968669079 0.9983944858607484 1.1154628670511832 0.7580999759333301 1.0 16.75206072300101 4.738418722033091 4.42016467745671 1.0662197450487974 0.6553392466314845 0.46830985110934054 0.11701315124331792 0.16810527050735746 8.125945222832513 0.027640982111673856 0.2163732742198942 54754.36188935528 -4.738418722033091 -0.4108804984173129 NIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 NIIEATHMYDNAAEACSTTEEVFNSPR 27 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR 321.53 1.0727999999999996e-82 4144800000.0 938610.0 1032290.0 893030.0 899910.0 947150.0 1133700.0 913950.0 861290.0 1235770.0 962260.0 True False 933556.6280493734 1066649.1486175167 1018760.8616440892 1013838.5137301482 1067763.9383021216 1055329.9874427423 869738.7468719481 925563.833342002 931231.0419696238 900847.7429677673 1.0363090048645174 1.1840504202225457 1.130891285011013 1.12542715641396 1.1852879097909075 1.1714854099162708 0.9654669767020416 1.027436479213246 1.0337274519906785 1.0 19.7809237635752 2.2423747870112654 24.999998406350823 1.009372666304906 1.1420913876091874 0.6877332817659403 0.04361031299005561 53.23186755099325 348910.7572500231 0.015008333495498835 0.01211125214694011 174.73294110228406 -2.2423747870112654 0.1327187213042813 NIIGS(ph)SPVADFSAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 NIIGSSPVADFSAIK 15 0 P42566;B1AUU8 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 NIIGS(0.597)S(0.403)PVADFSAIK 73.887 0.038223 95191000.0 448540.0 398360.0 389020.0 370870.0 364830.0 457300.0 438430.0 416330.0 624060.0 447570.0 True False 446125.1104774784 411619.1717862948 443790.63457754423 417822.10397384263 411288.93798317335 425687.92736841016 417221.46593475394 447398.65868090413 470268.7749755727 419005.6994160452 1.064723251018372 0.9823712955693805 1.0591517852765273 0.9971752282991565 0.9815831587884688 1.01594782114343 0.9957417441247747 1.0677627041933542 1.1223445782025667 1.0 18.67661034237896 1.6606615810715668 5.950992195322065 1.072136018668051 1.0126715103026078 0.2464017051165237 0.038776884670913725 0.15472733557888033 11.520390504346286 0.018898795099802364 0.00934705099979933 45.77850240316198 -1.6606615810715668 -0.05946450836544326 NIIGSS(ph)PVADFSAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 NIIGSSPVADFSAIK 15 0 P42566;B1AUU8 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 NIIGS(0.048)S(0.952)PVADFSAIK;NIIGS(0.043)S(0.957)PVADFSAIK 172.57 1.0688e-06 94272000.0 427280.0 360300.0 320420.0 308970.0 317550.0 384800.0 321030.0 342610.0 552750.0 410270.0 True False 424979.57195527107 372292.3676940505 365532.350859433 348085.5703205922 357988.1102336891 358199.68172176724 305500.55244630645 368177.297938329 416532.1689705286 384086.21735018125 1.1064692060215384 0.9692937441559429 0.951693485335788 0.9062693598381159 0.932051435491376 0.932602279230414 0.7953957696112115 0.9585798222034412 1.0844756988266662 1.0 18.551070669190185 4.843728667795001 1.8933520592962043 0.934314434934629 1.1943410123293572 0.3182177429018739 0.06912378469114797 1.2750491180135244 3.8078509193951886 0.017868069771463026 0.6371790185073793 69779.63088095913 -4.843728667795001 0.26002657739472823 NIIHGSDSVESAEK ddPTM_BT-474_Trastuzumab_2h_R1 5 NIIHGSDSVESAEK 14 0 P15531;P15531-2 P15531 NME1 Nucleoside diphosphate kinase A 0 ;;;; 216.34 6.1645e-12 6575300000.0 6611200.0 7371700.0 7280350.0 7410650.0 7412300.0 10843800.0 8345900.0 8649000.0 12380600.0 9942300.0 False True 6575606.033773377 7617062.578213255 8305359.998063391 8348837.53016893 8356212.468855845 10094193.629559498 7942176.932565897 9294432.298732108 9329567.021540523 9307773.901968716 0.7064638766507371 0.8183549212129172 0.8923035825254306 0.8969746813900413 0.897767023228658 1.0844906350190182 0.8532842563876657 0.9985666171764458 1.0023413890153905 1.0 23.150004735539046 5.930989184047579 0.45475106833528156 0.9860129784781815 4.736381527383759e-16 0.6931721031668188 0.05765494732517335 7.539488705099217 0.5230626226172475 0.03442937192313702 5.035141108688141 853078.8681217053 -5.930989184047579 -0.986012978478181 NIIHGSDSVK ddPTM_BT-474_Trastuzumab_2h_R1 4 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12;O60361 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 ;;; 171.92 3.8734e-06 3467450000.0 3587770.0 4654300.0 5313300.0 5398100.0 4323880.0 6717100.0 5873900.0 5145800.0 7896700.0 6174300.0 False True 3568453.8449587175 4809215.56191624 6061366.455968495 6081498.906520332 4874500.488355359 6252762.687352603 5589757.016522945 5529805.725842941 5950664.095358798 5780250.887915828 0.6173527610053942 0.8320081005428965 1.0486338004186577 1.0521167721688849 0.8433025802644609 1.081745897989412 0.9670440132986046 0.956672267877426 1.0294819741819918 1.0 22.462700682620486 4.563888242563453 2.8201509116128802 0.9914278967871996 0.6079624870526369 0.7684933002459696 0.06493106081983949 0.13897362021138898 1.8421659440271712 0.015600930005682518 0.09964981584697802 36634.32910291608 -4.563888242563453 -0.38346540973456267 NIIIALIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NIIIALIDR 9 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 104.17 0.0076867 30746000.0 79962.0 69965.0 58131.0 64432.0 55153.0 69311.0 56732.0 52534.0 90434.0 73783.0 False True 79531.49347661337 72293.74273026432 66315.33951629006 72589.0845936381 62176.40763255756 64519.6937105442 53987.656422713946 56454.35384224678 68147.75245351557 69074.10577119555 1.1513937471743374 1.0466113447741712 0.9600607749589438 1.0508870695204615 0.9001406089644322 0.9340648422472871 0.7815903777537896 0.8173012623463987 0.9865889929759137 1.0 16.075857359673538 4.263443454636609 0.6408265994849275 0.8756420669381914 1.2087412142205962 0.48735170756396273 0.07545754865948008 1.5719708453881218 0.7285701845322339 0.037479228552562145 0.35313333072999453 18341.863395719764 -4.263443454636609 0.33309914728240486 NIILEEGK ddPTM_BT-474_Trastuzumab_2h_R1 5 NIILEEGK 8 0 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ;;;; 124.23 0.0030562 3001219000.0 5079280.0 4008880.0 3648410.0 3190731.0 3007853.0 4689320.0 4377320.0 4289590.0 6131930.0 4306230.0 False True 5051933.720841062 4142313.1473808633 4162074.4154517977 3594677.2174469833 3390885.2506085136 4365158.345871921 4165572.3086137334 4609700.987896658 4620798.015152333 4031402.714651014 1.25314538844785 1.0275116232686892 1.0324134575605393 0.8916690968091892 0.8411179657852792 1.0827889582968142 1.0332811191189402 1.1434484010103925 1.1462010476798374 1.0 21.94285047690163 -0.04119692710270988 8.255667525304194 1.0000000000000118 1.045521526472228 0.015642212167898073 0.11415776789076755 0.0 0.0 0.11615998414590925 0.027379170830698102 0.9095007738030183 0.04119692710270988 0.04552152647221619 NIILEEGKEILVGDVGQTVDDPYATFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NIILEEGKEILVGDVGQTVDDPYATFVK 28 1 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;E9PS23 G3V1A4;P23528 CFL1 Cofilin-1 0 ; 311.39 1.0050999999999998e-82 3135000000.0 1583960.0 1650770.0 1569030.0 1545670.0 1516170.0 2242200.0 2389800.0 2040850.0 3153900.0 2127510.0 False True 1575432.1353544996 1705714.8815384635 1789935.7857467588 1741351.6635188833 1709245.262456344 2087201.991571067 2274196.244077451 2193148.590226317 2376663.6050947993 1991730.490347049 0.7909866033531416 0.8563984383455672 0.8986837297624899 0.8742908099054414 0.8581709577376188 1.0479339457254493 1.1418192647546326 1.1011271860602845 1.1932656635088603 1.0 20.925591012641277 2.640115780601595 3.0777449980507168 1.1157933137072293 0.8572829324808382 0.844555722167123 0.0521335575208525 0.09104865141629 1.6621818494405831 0.0171769048035508 0.01616711751656211 436.6322205555235 -2.640115780601595 -0.25851038122639114 NILFVITKPDVYK ddPTM_BT-474_Trastuzumab_2h_R1 1 NILFVITKPDVYK 13 1 F8VZJ2;H0YHX9;Q13765;E9PAV3-2;E9PAV3;F8W0W4;F8W1N5;F8VZ58;F8VNW4;Q9BZK3 F8VZJ2 NACA;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein 0 161.76 3.7946e-05 331500000.0 1653900.0 862050.0 612100.0 668160.0 492170.0 854010.0 500830.0 607110.0 1635300.0 974050.0 False True 1644995.586165565 890742.8131297699 698278.3595314239 752748.9874920116 554844.9321798611 794974.298823302 476602.9395436056 652415.6310421139 1232302.22689734 911885.2950738404 1.8039501185643756 0.9768145379048375 0.7657524069130651 0.8254864855903367 0.60845912877116 0.8717919930476876 0.5226566785518922 0.715458001753701 1.3513785489846655 1.0 19.79849283541046 4.744608970468812 2.743020258486432 0.7959058900456332 2.0051616320867263 0.6356016685323072 0.2179070196778351 0.26681634496914036 2.687332746154674 0.052206896323881 0.734915736362196 55540.3958142475 -4.744608970468812 1.2092557420410932 NILGGTVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 NILGGTVFR 9 0 O75874;C9J4N6;P48735;P48735-2 O75874;P48735 IDH1;IDH2 Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial 0 96.331 0.012246 0.0 188690.0 242210.0 163550.0 194570.0 160160.0 187370.0 162500.0 162510.0 264960.0 218420.0 False True 187674.11400543002 250271.81343096332 186576.41839791613 219202.54205028835 180555.42665730626 174417.55292153737 154639.2541897168 174637.3214090591 199664.1582821006 204480.24860122977 0.9178104745530974 1.22394126153003 0.9124422513871789 1.0719986089109734 0.882996905042986 0.8529799533923708 0.7562552141223619 0.8540547197281176 0.9764471612682682 1.0 17.641601969822734 3.1950115617048067 7.067609447584665 0.867032564374085 1.0367197142311042 0.30508726415570997 0.10410426111130605 0.2057109273246222 25.964114531762828 0.028773766099039238 0.034833662236347346 1566.792780411303 -3.1950115617048067 0.16968714985701916 NINDAWVCTNDMFR ddPTM_BT-474_Trastuzumab_2h_R1 2 NINDAWVCTNDMFR 14 0 P61970 P61970 NUTF2 Nuclear transport factor 2 0 ; 264.84 2.3742e-24 840330000.0 660430.0 573910.0 560020.0 529750.0 428640.0 594180.0 478170.0 434090.0 710580.0 649280.0 False True 656874.3182606709 593012.2474140786 638865.9482188992 596816.295683508 483224.763251672 553105.735149271 455039.090313212 466484.0000643565 535467.0802841758 607842.3945234254 1.0806655214888206 0.9756019862336613 1.0510388119930292 0.9818602668401202 0.7949836464278557 0.9099492568018881 0.748613611707657 0.7674423572085656 0.8809307891464284 1.0 19.213337774890544 3.3483215092486414 4.4684207275730365 0.8300428047907541 1.0278329788901805 0.5552505199510632 0.07491777999073851 0.14183219198751207 4.892765775726974 0.020580210088577012 0.02812788271562892 2230.0854759616786 -3.3483215092486414 0.19779017409942645 NINDHHSEADEEFYLSVGS(ph)PSVLLDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 NINDHHSEADEEFYLSVGSPSVLLDAK 27 0 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 NINDHHSEADEEFYLS(0.005)VGS(0.991)PS(0.004)VLLDAK;NINDHHSEADEEFYLS(0.148)VGS(0.825)PS(0.027)VLLDAK;NINDHHSEADEEFYLS(0.001)VGS(0.945)PS(0.054)VLLDAK 109.23 0.002619 142890000.0 145167.0 168463.0 180561.0 167797.0 155848.0 248915.0 206302.0 133188.0 261048.0 222500.0 True False 144385.43700157004 174070.1891169659 205982.4193356535 189040.08299538612 175694.31901653268 231708.0919328839 196322.38410982763 143127.1648749602 196716.21826398658 208299.85950816624 0.6931614708838031 0.8356711786939136 0.9888744995892719 0.9075382165006931 0.8434682550020862 1.1123775718331674 0.9424988791321338 0.6871207940941939 0.9443895868603525 1.0 17.66830234076237 4.625382174657734 3.32100599347108 0.9093395539448118 0.6864976576452522 0.3056994557736542 0.10607744590007827 0.38008869411729884 6.765491393573012 0.028084249641032948 0.17847386362304438 42206.77553203549 -4.625382174657734 -0.22284189629955964 NINMDNDLEVLTS(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 NINMDNDLEVLT(0.065)S(0.465)S(0.465)PT(0.005)R 141.85 6.3817e-07 329330000.0 164160.0 123980.0 119300.0 111200.0 119870.0 121440.0 112810.0 116690.0 182370.0 130530.0 True False 163276.18079989066 128106.59935250749 136096.40302581099 125277.90859840711 135134.7339748459 113045.13863901087 107352.94932395058 125398.00033981385 137427.35713279998 122199.46364764454 1.3361448236032245 1.048340111556429 1.1137234073157432 1.0251919677785093 1.1058537406064195 0.9250870279183084 0.8785058961755915 1.0261747195666269 1.1246150599241926 1.0 16.89887842739557 7.99999997833614 0.7913055565861566 1.0043288925647298 75.33196448446427 0.6054068730591013 0.07501959168627002 332.00087184040717 1.1873673358034074 0.02607691057649131 44201.62187564874 99999995.011712 -7.99999997833614 74.32763559189954 NINMDNDLEVLTSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 NINMDNDLEVLTS(0.001)S(0.998)PT(0.001)R;NINMDNDLEVLTSS(0.996)PT(0.004)R 445.83 1.5981999999999983e-182 804460000.0 1202660.0 1237090.0 1144650.0 1247200.0 1117820.0 1377660.0 1274160.0 1155100.0 1409960.0 1342650.0 True False 1196185.0121880877 1278265.792813302 1305806.7705238443 1405095.392121704 1260167.7511617765 1282425.6068628097 1212524.0130361223 1241299.4274789505 1062494.250496041 1256960.927499504 0.9516485246424333 1.0169495048316102 1.0388602715929367 1.1178512882790133 1.0025512516675055 1.0202589267543607 0.9646473382814047 0.9875401854760042 0.8452882084486752 1.0 20.261508373753387 1.9633552523169364 1.4389050063234659 0.9339877746058444 1.0299287175547784 0.31996017118119746 0.054380301991642066 0.478103390424381 1.8408575242488958 0.03782486042759007 0.017441042196315253 91.90840986657771 -1.9633552523169364 0.09594094294893407 NINPDVLFEVHNYNITTVENFQHFMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NINPDVLFEVHNYNITTVENFQHFMDR 27 0 Q9GZZ9-2;Q9GZZ9;E7EWE1;E7EQ61;C9JRV9;C9J5W5 Q9GZZ9-2 UBA5 Ubiquitin-like modifier-activating enzyme 5 0 216.81 2.0768999999999997e-34 152790000.0 109970.0 68773.0 57962.0 79114.0 58601.0 86329.0 55678.0 64842.0 99259.0 81198.0 False True 109377.93373881548 71062.06773084356 66122.54578526442 89129.82428825872 66063.48999466037 80361.27942660711 52984.642429384985 69680.83930100448 74797.9494524572 76015.87412289475 1.4388827991635582 0.9348319486000729 0.8698518111935962 1.172515942448582 0.8690749235857714 1.0571644456352256 0.6970207610021664 0.9166616855362549 0.9839780219001555 1.0 16.214013102408188 4.738614413294336 23.32496236260572 0.9355614947292245 1.4388829439173307 0.604457197839255 0.11976176891531137 1.1045281028873513 475458.216648141 0.02780445682344775 0.16008628632523458 54779.039533215924 -4.738614413294336 0.5033214491881063 NINPSTANS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 NINPSTANSPK 11 0 P46937-6;P46937-7;P46937;P46937-9;P46937-4;H0YCI3 P46937-6 YAP1 Transcriptional coactivator YAP1 1 NINPSTANS(1)PK 127.32 0.0003032 196370000.0 284580.0 180970.0 161190.0 159470.0 164660.0 299330.0 225740.0 224660.0 480510.0 265400.0 True False 283047.85289981007 186993.47705132497 183884.15091140373 179658.88564917247 185628.47498371662 278638.0216470285 214820.09378945635 241425.27000036475 362094.7490041227 248461.9447796281 1.1392000217613114 0.7526040948330247 0.7400897995646727 0.7230841157929432 0.7471102874460663 1.1214515039482804 0.8645995827650379 0.9716790642305223 1.457344903764963 1.0 17.92266537539144 1.435111112121493 5.2577512734401814 1.2321912777266386 0.8643337114920719 0.3909985806790609 0.1759777558017278 0.17974292163877872 9.366421015753245 0.11473341687453802 0.04372388733308257 27.23397987023253 -1.435111112121493 -0.36785756623456667 NIPS(ph)PGQLDPDTR ddPTM_BT-474_Trastuzumab_2h_R1 3 NIPSPGQLDPDTR 13 0 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 NIPS(1)PGQLDPDTR;NIPS(1)PGQLDPDTR;NIPS(1)PGQLDPDTR 203.04 9.338e-08 337070000.0 299141.0 360654.0 328288.0 328418.0 314582.0 360156.0 353889.0 327460.0 407914.0 381426.0 True False 297530.4580936894 372658.15037005354 374508.0968695514 369995.6851265437 354642.15302640357 335259.2634360311 336770.03708273673 351896.72800818784 307389.060467561 357083.0661247723 0.8332247768638965 1.0436175381104154 1.0487982556380604 1.0361613871581898 0.9931642989266933 0.9388831205982883 0.94311399512029 0.9854758217104245 0.8608334856185894 1.0 18.445900193359154 2.7938586321785253 5.922417997969038 0.9479801060042826 1.0000348322257266 0.09446525787167082 0.0672678341179174 0.48307464009276113 37.87213447747611 0.020426746178190954 0.021545450375316126 622.0977522734197 -2.7938586321785253 0.052054726221444025 NIQVSHQEFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 NIQVSHQEFSK 11 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 156.14 3.1202e-05 406600000.0 702200.0 548770.0 455120.0 483280.0 452090.0 659210.0 494130.0 489660.0 887000.0 593870.0 False True 698419.4332217537 567035.47771153 519196.9400260439 544463.198448185 509660.98175263323 613640.364313425 470227.04414009093 526200.915643099 668410.7351910613 555968.7081623129 1.256220760212017 1.0199053820597153 0.933860003995884 0.9793054725109297 0.9167080345893132 1.103731838329065 0.8457796944982199 0.9464577914508755 1.2022452439821871 1.0 19.084644159814598 4.72620157655665 3.6510802403454057 0.9803582218988572 1.2833227404082692 0.40486031017887747 0.09508901153619974 0.23655396734163514 5.862049740462814 0.022135198131210114 0.19166218524755502 53235.52931374304 -4.72620157655665 0.302964518509412 NIRDDEGFIIR ddPTM_BT-474_Trastuzumab_2h_R1 5 NIRDDEGFIIR 11 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;;; 266.93 3.7931999999999986e-21 1159483000.0 760028.0 947199.0 824494.0 988983.0 899868.0 932516.0 950084.0 876602.0 1070109.0 915665.0 False True 755936.0936950495 978725.9461211141 940575.5885696815 1114188.1463972896 1014460.8558644913 868053.3638265466 904124.8072466642 942018.4925347624 806394.9756759527 857226.4757597527 0.8818394147533412 1.1417355550686619 1.0972311462219564 1.2997593727022885 1.1834222163581487 1.0126301372775475 1.0547093828913134 1.098914369974235 0.9407023680192 1.0 19.709316883314358 2.727216479883474 24.587370146189517 1.036123262061305 1.1305938449319781 0.17409156258813996 0.10477305127706539 1147.4487389612302 2486984.9628632762 0.034693063645348826 0.03297613025897754 533.6008096564235 -2.727216479883474 0.09447058287067311 NISFNDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NISFNDKK 8 1 P15311;E7EQR4;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y7M3;P35241-4;P26038 P15311;A0A2R8Y5S7 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 ; 98.943 0.011488 1932830000.0 1364620.0 1197490.0 764660.0 958930.0 1026900.0 1996170.0 1225900.0 1203970.0 2905750.0 1990820.0 False True 1357273.0375435366 1237347.7307520092 872317.4814561318 1080330.4396786923 1157669.628086839 1858179.4663787407 1166598.533607223 1293816.3550357816 2189666.8475551577 1863764.163173249 0.7282429098929774 0.663897157806328 0.4680406988676733 0.5796497545265166 0.6211459856142895 0.9970035389107387 0.6259367771193592 0.694195317519641 1.1748626198644285 1.0 20.82978788524653 1.2484884869648216 23.956090247096835 1.0874312663911883 0.6701333859388573 0.605695589265629 0.13398097269310857 71.18083162917286 171765.41617340042 0.09507592338542128 0.03372195342375475 17.72101066568267 -1.2484884869648216 -0.41729788045233096 NISHDTFGTTYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 NISHDTFGTTYGR 13 0 Q9H7B2 Q9H7B2 RPF2 Ribosome production factor 2 homolog 0 ; 190.37 4.4741e-06 746890000.0 244910.0 263050.0 268150.0 260130.0 225410.0 286010.0 195008.0 221930.0 338490.0 273060.0 False True 243591.43177205927 271805.4602329169 305903.18919841776 293062.4313282701 254114.62739025595 266238.8018951214 185574.71803709725 238491.5435377057 255073.67503362134 255633.07702157254 0.9528948077071533 1.0632640478289108 1.196649481994081 1.146418275533017 0.9940600424287486 1.0414880773533617 0.7259417294477774 0.9329447750518597 0.9978116995090429 1.0 17.96371499682323 2.6166367488497038 2.5252712233605625 0.9058606630051353 1.085903871903651 0.3323424420706399 0.09921371761150247 0.29691651571687744 3.7123959554173815 0.03636475031739477 0.03357197931891109 413.6535433599141 -2.6166367488497038 0.18004320889851555 NISHYEEQLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NISHYEEQLVK 11 0 P13861-2;P13861;H7C330 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 0 ; 92.792 0.0050066 442640000.0 1053930.0 996120.0 894250.0 923300.0 923710.0 1156670.0 1082980.0 987740.0 1484550.0 1157030.0 False True 1048255.7579826316 1029275.2520327452 1020152.6270396599 1040189.6853319177 1041338.9932418858 1076712.1254083067 1030592.1200146436 1061450.17444209 1118702.5444508325 1083187.354816779 0.9677511035567286 0.9502282753354768 0.9418062558644054 0.9603044946069054 0.9613655371909582 0.9940220596375338 0.9514440095997687 0.9799322063002057 1.032787670088764 1.0 20.046851371354144 1.428425427468944 4.287067191019689 1.0156375182176838 0.9613524068165777 0.6761716995899865 0.015125203284842499 0.11911628765382745 3.8766998652102216 0.010776714874219497 0.0039099700361381 26.81794078286916 -1.428425427468944 -0.054285111401106034 NISLHGDGPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NISLHGDGPLR 11 0 E7EV54;C9JFV4;Q8IZL8;I3L445 E7EV54 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 0 ; 134.56 0.00013827 345510000.0 335090.0 387450.0 357130.0 391110.0 368520.0 401400.0 338610.0 363050.0 508510.0 394910.0 False True 333285.9126719992 400346.03903152904 407410.79977039335 440624.4858985887 415448.83761083 373652.162793964 322230.1406841849 390142.6345305453 383194.5241849002 369706.50570053875 0.9014878221860663 1.0828752885290265 1.1019843943465657 1.1918223755994528 1.1237260670423324 1.0106724037380646 0.8715836365216425 1.0552766275813383 1.0364830433773506 1.0 18.49602090519303 2.615658002003128 5.989334159034558 0.9910629334352329 1.087510068669538 0.21267917831099847 0.08225615470496175 0.3639116019582765 16.360151477881526 0.027978708174021504 0.026292746286093415 412.7223635908959 -2.615658002003128 0.09644713523430515 NISSS(ph)PSVESLPGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NISSSPSVESLPGGR 15 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 NISS(0.016)S(0.802)PS(0.182)VESLPGGR 230.97 2.6928000000000004e-13 786790000.0 602770.0 683640.0 632330.0 712530.0 750630.0 784820.0 722990.0 712680.0 986120.0 796800.0 True False 599524.753294043 706394.5441308928 721356.5676891118 802736.224942654 846218.2811674186 730567.24066756 688016.2116099906 765863.8005157115 743103.9393310127 745947.5418251989 0.803709000537912 0.9469761672549694 0.9670339095482272 1.076129593481203 1.1344206311034624 0.9793815244433863 0.9223386002808444 1.0266992751819801 0.9961879323481266 1.0 19.508714652089328 4.723437530683823 1.63437668160301 1.0163247943672618 0.7327666396331449 0.5785375174541283 0.054822873338621424 0.7530689509160157 1.9805888321478986 0.01578246205073939 0.3355681187974208 52897.79030707609 -4.723437530683823 -0.28355815473411683 NISSSPS(ph)VESLPGGR ddPTM_BT-474_Trastuzumab_2h_R1 3 NISSSPSVESLPGGR 15 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 NISSS(0.002)PS(0.961)VES(0.037)LPGGR;NISS(0.001)S(0.313)PS(0.685)VES(0.001)LPGGR;NISSS(0.003)PS(0.997)VESLPGGR 207.53 3.5091999999999994e-09 906220000.0 529690.0 561810.0 468010.0 539220.0 531230.0 560990.0 450390.0 459030.0 689160.0 543590.0 True False 526838.2078940915 580509.5062286828 533901.7399841553 607485.1967125286 598878.9916531026 522210.08172841446 428602.9150431175 493285.1495071097 519325.7522708808 508897.62080918625 1.0352538238563158 1.1407196310048142 1.0491338889248698 1.1937277202172423 1.1768162537306404 1.0261594088375976 0.8422183510341549 0.9693209976551835 1.0204916097762708 1.0 18.957015920900652 2.480639780437007 24.91722427752851 0.9505551318075199 1.1186755522253329 0.5870117125441305 0.06381164465076869 94.14339379562006 666705.3732465355 0.021890052548361523 0.01867530222617956 302.4403837458558 -2.480639780437007 0.16812042041781294 NIYSEELR ddPTM_BT-474_Trastuzumab_2h_R1 6 NIYSEELR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;; 190.26 0.0004359 12107400000.0 5067990.0 5491540.0 5173030.0 5077470.0 4399130.0 5233770.0 5524090.0 4716760.0 7428240.0 5437160.0 False True 5040704.504946624 5674322.589193965 5901347.659217189 5720277.181395277 4959333.129813664 4871971.798869364 5256868.662626907 5068748.5824219715 5597649.785316394 5090155.793813125 0.9902849164407488 1.1147640306198232 1.1593648403434005 1.123792161400647 0.9742988880304074 0.9571360870311759 1.0327520169454174 0.9957943897479182 1.0997010724347782 1.0 22.27927838270214 3.2432129947592827 24.99997964678872 1.0079453363665085 1.1027676332060505 0.38045500998661463 0.054222213537361764 116.80772220670167 627672.6781108254 0.01541856995796999 0.02019793260388685 1750.7050913903663 -3.2432129947592827 0.09482229683954202 NKAGT(ph)PVSELTK ddPTM_BT-474_Trastuzumab_2h_R1 1 NKAGTPVSELTK 12 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 NKAGT(0.998)PVS(0.002)ELTK 66.673 0.092835 297620000.0 301530.0 337640.0 354010.0 389340.0 382580.0 449760.0 472410.0 384750.0 523920.0 412990.0 True False 299906.59598313225 348878.1432923097 403851.5308899194 438630.4040800706 431299.29527068115 418669.1498211587 449557.72351854807 413461.9987209132 394806.9361683212 386632.6246214724 0.7756887983179171 0.9023505029713266 1.0445355750444105 1.1344888562094468 1.1155274226869476 1.0828603774217223 1.162751653352279 1.0693924216191217 1.0211423222622553 1.0 18.560603853821828 4.393464981117475 2.0499286871366262 1.0918535982098798 0.7702258263531487 0.8202873962604772 0.04689167530149919 0.1437946880788089 1.040632939668545 0.012032318322618854 0.06646403978022672 24743.71934889721 -4.393464981117475 -0.3216277718567311 NKDEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 NKDEVK 6 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;; 94.662 0.040335 846970000.0 1713370.0 1144530.0 986500.0 984170.0 1076700.0 1288060.0 1450270.0 1503990.0 2407470.0 1545420.0 False True 1704145.4062933018 1182624.9891670044 1125390.6251882873 1108765.8210907755 1213811.3628991116 1199019.4439670988 1380114.8995305886 1616225.3709064745 1814181.2769452326 1446789.972499371 1.1778802996189848 0.8174130396577092 0.7778534870850279 0.7663626664313624 0.838968603578457 0.8287446462569535 0.9539151678984896 1.1171112612250131 1.253935478838841 1.0 20.464424073345924 1.8505658063666304 2.69277534532844 1.1432272361981528 0.8564809431021199 0.45535422428404837 0.12406573963624112 0.2219607536248574 2.9191323826699973 0.06923909584641598 0.034562545119046634 70.88687094741117 -1.8505658063666304 -0.28674629309603294 NKDQGTYEDYVEGLR ddPTM_BT-474_Trastuzumab_2h_R1 7 NKDQGTYEDYVEGLR 15 1 F8VPF3;P60660;F8W1R7;J3KND3;G3V1V0;B7Z6Z4;G3V1Y7;P60660-2;G8JLA2;F8VZU9;F8W180 F8VPF3;P60660;P60660-2 MYL6 Myosin light polypeptide 6 0 ;;;;;; 278.3 1.1892e-33 28199410000.0 8096142.0 7896252.0 7593672.0 7048212.0 7046855.0 9370979.0 8937114.0 8608152.0 11459249.0 9479580.0 False True 8052553.271037938 8159073.974434878 8662795.01221974 7940514.916530548 7944230.214268072 8723185.278641801 8504791.652729088 9250536.01355017 8635270.630019635 8874585.08852324 0.9073723662249441 0.9193752601444237 0.976135213737779 0.8947477360715547 0.8951663807406254 0.9829400689304075 0.9583311859534284 1.0423626480874149 0.9730337299021347 1.0 23.08124824040941 2.395824964303497 1.9609454276570397 1.004565716413758 0.9213363828666999 0.5729082666139624 0.030631161606353492 0.22947475936315362 1.8026630941877066 0.013379430788838895 0.010105026314302077 248.78544248186745 -2.395824964303497 -0.08322933354705808 NKDQSEQETSDADQHVTSNAS(ph)DSESSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 NKDQSEQETSDADQHVTSNASDSESSYR 28 1 A0A590UJD9;A0A0C4DFT3;A0A590UJ08;Q12959-4;Q12959-2 A0A590UJD9;A0A590UJ08 DLG1 Disks large homolog 1 1 NKDQSEQETSDADQHVT(0.016)S(0.068)NAS(0.869)DS(0.046)ES(0.001)SYR 167.16 3.4703e-12 440010000.0 247010.0 229060.0 240140.0 224430.0 220410.0 320910.0 336260.0 301780.0 380070.0 291170.0 True False 245680.12560539084 236684.12363030578 273949.62466570205 252842.81498867393 248477.90702757842 298726.2470408841 319993.8191620566 324300.35600779 286406.84117707587 272587.2813168213 0.9012897609109027 0.8682874802042353 1.0049978243383166 0.9275664431855907 0.9115535612198239 1.095892095910675 1.1739132420860674 1.1897119867117496 1.0506977427321433 1.0 18.05635872326658 2.680109563746295 4.4555752012364005 1.128972185840564 0.9241186853573601 0.6640873283631241 0.06259807464478714 0.11813278010969654 4.881292256562452 0.020622119232954976 0.019673428629174622 478.7508562825492 -2.680109563746295 -0.20485350048320383 NKDSGSDTASAIIPSTTPSVDS(ph)DDESVVK ddPTM_BT-474_Trastuzumab_2h_R1 3 NKDSGSDTASAIIPSTTPSVDSDDESVVK 29 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 NKDSGSDTASAIIPS(0.003)T(0.001)T(0.005)PS(0.254)VDS(0.736)DDESVVK;NKDSGSDTASAIIPSTTPS(0.002)VDS(0.998)DDESVVK;NKDSGSDTASAIIPSTT(0.001)PS(0.031)VDS(0.809)DDES(0.159)VVK 209.99 6.330299999999999e-26 1369980000.0 1229615.0 958330.0 975198.0 841211.0 1019710.0 1413935.0 1327829.0 1238798.0 2184880.0 1376801.0 True False 1222994.8894630682 990227.4347272811 1112497.40182703 947708.2263486926 1149564.0242053082 1316193.0014949758 1263596.8384706322 1331243.3972487825 1646445.5998920475 1288932.3814413613 0.9488433272934319 0.7682539821211952 0.8631154107424694 0.7352660542897592 0.8918730266670754 1.0211497673936394 0.98034377649633 1.0328264045629039 1.2773715856613779 1.0 20.297745149922083 2.420031180399282 1.0948353995613511 1.1033864449247581 0.8253216501452338 0.6024047613228731 0.09192879899458704 0.33753830720012473 0.8065519929062371 0.05594190526328441 0.03748883187153523 263.04568401395346 -2.420031180399282 -0.2780647947795243 NKEDFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 NKEDFEK 7 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 ;;; 110.87 0.006116 1604790000.0 3986580.0 3127430.0 2878540.0 2696820.0 2912360.0 4009940.0 4078950.0 3873980.0 6605200.0 4058240.0 False True 3965116.6962306728 3231524.616978641 3283813.4112817966 3038237.1354888175 3283231.78308987 3732742.286183426 3881635.6053978186 4163076.059271841 4977436.965145427 3799239.6487659304 1.0436605907496839 0.8505714078942889 0.8643343707861244 0.7996961014227407 0.8641812801033306 0.9824971918778264 1.0216874859838474 1.0957655857861168 1.3101139768222303 1.0 21.85727928663946 2.103604875602607 1.478920294954715 1.1514741806722357 0.8795145624781736 0.5667918569735391 0.09412783305587116 0.27766494043820145 1.1527702736140837 0.05816414804963125 0.030396096849892244 126.94186529974729 -2.103604875602607 -0.2719596181940621 NKEDQYDHLDAADMTK ddPTM_BT-474_Trastuzumab_2h_R1 4 NKEDQYDHLDAADMTK 16 1 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;; 213.94 3.743e-13 3938280000.0 5479240.0 3977420.0 3623890.0 3534810.0 3610490.0 5685090.0 5106990.0 4728020.0 8225200.0 5330970.0 False True 5449740.380640795 4109806.020298841 4134102.212583453 3982316.583567767 4070264.50044917 5292093.109562375 4859945.383103639 5080848.8607990965 6198209.672033269 4990742.930526967 1.0919697641219448 0.8234858171436393 0.8283540687492268 0.7979406350924347 0.8155628444720143 1.0603818275616108 0.9737919686018536 1.0180546126150831 1.2419412817519748 1.0 22.25082316292406 2.731759393726945 24.69365143022013 1.04935187377287 0.8623177719102953 0.44571917582212406 0.10395609739503782 434.3531788756546 1577030.9236963242 0.03336135523574024 0.03210677834610162 539.2118075546155 -2.731759393726945 -0.18703410186257463 NKEEAAEYAK ddPTM_BT-474_Trastuzumab_2h_R1 7 NKEEAAEYAK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 ;;;;;; 151.26 1.8351e-05 13933120000.0 9521810.0 7024420.0 7232030.0 6272570.0 6090000.0 9065170.0 9304890.0 8445930.0 13452170.0 8998840.0 False True 9470545.63293255 7258223.573348439 8250236.962068353 7066676.718858908 6865525.40174199 8438516.135014845 8854776.922568338 9076208.184163542 10137062.953342887 8424526.326905478 1.124163574952148 0.8615586552525561 0.9793116718882466 0.8388218452460651 0.814944975578687 1.0016606047113519 1.0510711913011377 1.0773553113813394 1.2032798711742483 1.0 23.00616414166788 2.32236591046079 2.6169222828856142 1.0923168791872886 0.918438171790724 0.38224121230777186 0.09461899798059242 0.2724075082329991 3.8215444219540635 0.03770696242413528 0.028669357667125264 210.07090695753942 -2.32236591046079 -0.17387870739656464 NKEFER ddPTM_BT-474_Trastuzumab_2h_R1 2 NKEFER 6 1 Q32MZ4-2;Q32MZ4;Q32MZ4-3;Q32MZ4-4 Q32MZ4-2;Q32MZ4-3;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 0 ; 92.925 0.042137 1085910000.0 1079870.0 986480.0 977170.0 930980.0 986630.0 1109950.0 1301690.0 1108210.0 1591850.0 1203470.0 False True 1074056.0999048357 1019314.3904602468 1114747.0422860994 1048841.9725444703 1112271.4822858283 1033221.7690412551 1238722.281761307 1190910.2575763548 1199559.8971971702 1126663.5142574953 0.9533068980339445 0.9047194460113543 0.9894232201357392 0.9309274324337097 0.9872259713840545 0.9170633076923406 1.0994607228207454 1.0570238962261949 1.0647011126367358 1.0 20.103625278449435 2.240777649668224 24.99999964190971 1.0611319550333314 0.9481952170478765 0.7059134166402952 0.034121304921024394 28.072098804041996 316554.1797219203 0.01129201762607009 0.009021359554563629 174.0915330380081 -2.240777649668224 -0.1129367379854549 NKEGLHNAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NKEGLHNAK 9 1 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 116.52 0.00078161 601660000.0 1092380.0 1087430.0 1065890.0 1073840.0 1125250.0 1268930.0 1356580.0 1169060.0 2066270.0 1379750.0 False True 1086498.747454828 1123624.4501846824 1215958.0471180363 1209788.0338967033 1268543.9176207182 1181211.855839921 1290957.0427611452 1256301.1935663952 1557065.445099473 1291693.1737365949 0.8411430590066656 0.8698849487098199 0.9413675568173262 0.9365908704131668 0.982078363045838 0.9144678317242516 0.9994301038432214 0.9726003195729384 1.2054452843435042 1.0 20.300831985100306 3.4049194245133023 0.37252121519423936 1.0629588405944044 0.8074098964780876 0.518792306460075 0.06539245789868349 1.985395502926745 0.43596454539096674 0.06550075593347264 0.20878495134813096 2540.5013177485666 -3.4049194245133023 -0.2555489441163168 NKEIFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKEIFLR 7 1 P14625;Q96GW1;A0A1W2PRR1;F8W026 P14625 HSP90B1 Endoplasmin 0 ; 140.09 0.0024149 2165800000.0 1494000.0 2186400.0 1980990.0 2068200.0 2282600.0 2379300.0 2760100.0 2256400.0 3750400.0 2316800.0 False True 1485956.4699990049 2259173.0022932915 2259896.172926247 2330033.907942677 2573275.5799698276 2214824.5912697506 2626583.4183940766 2424784.0257670395 2826164.1727852905 2168939.8404877293 0.6851072778786054 1.0416024271956161 1.0419358484456924 1.0742731838144124 1.1864209103149561 1.0211553819638 1.2109987420413824 1.117958175004881 1.3030163953970118 1.0 21.048558607104454 5.194218889832946 1.0936104724822506 1.13621879226971 6.510985106571067e-21 0.6887459762818582 0.08768834464025162 2.1531186028209164 1.0718276208763358 0.023723842697712036 3.586868125552494 156393.5687115028 -5.194218889832946 -1.13621879226971 NKELEIAQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKELEIAQDR 10 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ; 126.34 0.00035119 753480000.0 589750.0 583800.0 540380.0 551520.0 619510.0 729400.0 697310.0 628770.0 1003790.0 690550.0 False True 586574.8515273854 603231.4300854474 616460.8069328397 621342.37545138 698400.9263765481 678978.2948229128 663578.4513171164 675692.0102293664 756419.404596882 646478.5077904009 0.9073385185413817 0.9331036110500136 0.9535673645823761 0.9611183789776189 1.0803157691407452 1.0502720301462038 1.0264509079894417 1.0451886676616897 1.1700611783402486 1.0 19.30224288280241 3.342879125021203 4.217840235476029 1.0599682439411258 0.9350658890636346 0.661538727980503 0.04343712226635857 0.13551371549898458 4.33638656396285 0.012219830196612998 0.016715028682929636 2202.3134190290757 -3.342879125021203 -0.12490235487749113 NKELYEINPPEISEEIIGS(ph)PIPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NKELYEINPPEISEEIIGSPIPEPR 25 1 Q86YS7;Q86YS7-5;Q86YS7-3;Q86YS7-2;Q86YS7-4 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 1 NKELYEINPPEIS(0.025)EEIIGS(0.975)PIPEPR 58.418 0.052398 48603000.0 10361.0 14324.0 11344.0 16457.0 13615.0 18261.0 15456.0 15049.0 21290.0 15454.0 True False 10305.217527215324 14800.765680959152 12941.136596184408 18540.45451262578 15348.789547572595 16998.660051770243 14708.334232346246 16172.032797273598 16043.364771384084 14467.71248916495 0.7122907325489797 1.0230204458406007 0.8944839487151951 1.2815055957540598 1.0608995415873446 1.1749376457750837 1.016631637058139 1.1178016434446727 1.1089081831975276 1.0 13.820549212861927 5.2696471567101195 1.0283254380138291 1.1020382534940143 2.981662018142838e-10 0.5811707553889206 0.09572103190038007 3.1302872619719584 1.2517121074825164 0.026412699783787272 4.920750170215851 186057.48951989337 -5.2696471567101195 -1.1020382531958481 NKEPGAEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NKEPGAEEK 9 1 P25685 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ;; 124.42 0.00048343 806430000.0 1389600.0 990540.0 837790.0 765830.0 751310.0 1122080.0 1040580.0 1061990.0 1804410.0 1146460.0 False True 1382118.5479990754 1023509.5251059262 955743.5497987784 862783.9994776802 846984.8751367432 1044513.2506922045 990243.1699983736 1141241.0864759511 1359737.333355245 1073291.9412662133 1.2877377485649661 0.9536170782186658 0.8904786415066552 0.8038670247163257 0.7891467759811138 0.9731865213298282 0.9226223843907156 1.063309098482166 1.2668848810614366 1.0 20.033611119724174 1.5858151575849566 3.9388348964592717 1.1422469800673472 0.9339240411027687 0.22141402003375354 0.14270678028390257 0.23842771603501536 8.446895911833465 0.08761765859754117 0.037840554462739845 38.531432705390884 -1.5858151575849566 -0.20832293896457843 NKESKDPADETEAD ddPTM_BT-474_Trastuzumab_2h_R1 4 NKESKDPADETEAD 14 2 P16949 P16949 STMN1 Stathmin 0 ;;; 130.47 0.00024592 6477190000.0 6150200.0 4599310.0 4084530.0 4040930.0 3998540.0 6503330.0 6856450.0 5927350.0 11376900.0 6376790.0 False True 6117088.0065514585 4752395.253008391 4659596.320628795 4552511.323674115 4507730.367796614 6053770.104292144 6524777.3193174405 6369678.955473426 8573215.437649572 5969817.802755407 1.0246691287174758 0.7960704011460605 0.7805257169621037 0.762587984104452 0.7550867575415857 1.0140627912459887 1.0929608800298543 1.0669804617041176 1.4360933148902049 1.0 22.50925547081889 2.401305255115157 1.8942495923730773 1.1596140446966852 0.8164748494065037 0.5816175241650071 0.12982872608377344 0.23954202263770139 1.7539193476999064 0.05686870117165722 0.042770188335718766 251.94471641946345 -2.401305255115157 -0.34313919529018144 NKETLEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NKETLEGR 8 1 A0A494C0P0;A0A494C0K7;Q6P2C8-4;Q6P2C8-2;Q6P2C8 A0A494C0P0 MED27 Mediator of RNA polymerase II transcription subunit 27 0 71.45100000000002 0.044423 55163000.0 136700.0 139610.0 147680.0 148650.0 147920.0 166210.0 171130.0 161670.0 204310.0 154090.0 False True 135964.02238879778 144256.8344539728 168472.06034242897 167469.07475857213 166756.73520947024 154720.2939162551 162851.78811991526 173734.63634362584 153960.53811373786 144255.8442769138 0.9425200280121822 1.0000068640342719 1.167869913256545 1.160917088649096 1.155979059603046 1.0725409059979139 1.128909465929884 1.204350764535574 1.0672741814064386 1.0 17.138270242794743 4.3633986803350355 4.502121727292253 1.1319975822634991 0.9554400661306177 0.5120247463924229 0.05794473603976728 0.13647634731871133 4.595606776389443 0.013708972411998251 0.04112729909864461 23088.65744283143 -4.3633986803350355 -0.1765575161328814 NKEVTWEVLEGEVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NKEVTWEVLEGEVEK 15 1 P05455 P05455 SSB Lupus La protein 0 180.81 5.598699999999999e-07 313770000.0 361430.0 323780.0 293090.0 316080.0 301710.0 414330.0 400730.0 411320.0 681280.0 425000.0 False True 359484.101038648 334556.8215708571 334354.52441605134 356095.6955915872 340130.98012472485 385688.34232790966 381345.15896273963 442014.787040639 513387.67268429004 397876.13613919396 0.9035075702878677 0.8408567169100458 0.8403482743661709 0.8949913383772528 0.8548665004772555 0.9693678692832673 0.9584519510597864 1.1109356578400156 1.2903203435771913 1.0 18.601959845933674 1.9417786095043308 1.5696045254451663 1.15713838993342 0.8716354656289785 0.6979339432454787 0.07377014451421764 0.19323497461459457 0.8865932338542765 0.04766442129110493 0.021995751393157525 87.4537848020084 -1.9417786095043308 -0.28550292430444146 NKFDVDAADEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NKFDVDAADEK 11 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ;; 179.67 6.3842e-06 3365940000.0 5791430.0 4113270.0 3964780.0 3470880.0 3562840.0 5645310.0 5325430.0 5320190.0 8756900.0 5470730.0 False True 5760249.584368359 4250177.705425776 4522986.561514459 3910293.052122659 4016546.555392844 5255063.007330325 5067818.605781805 5717209.593177424 6598879.33144825 5121583.32767241 1.1247009402825048 0.8298562052991806 0.8831227126729199 0.7634930063511742 0.7842392280705568 1.0260621903653724 0.9895023240957325 1.1162972907785738 1.2884451758880633 1.0 22.288158454912253 2.1108813523484407 1.5544081281272155 1.1472699505809698 0.8747660271679294 0.44254624498330397 0.11908391036276307 0.340148307670179 1.5672568538582465 0.07221954133711454 0.038486114318858525 129.0866565449155 -2.1108813523484407 -0.2725039234130404 NKFDVDAADEKFR ddPTM_BT-474_Trastuzumab_2h_R1 1 NKFDVDAADEKFR 13 2 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 112.96 0.00048329 376470000.0 449940.0 403710.0 371040.0 425810.0 395110.0 513630.0 549500.0 479050.0 868760.0 532530.0 False True 447517.5730330338 417147.2433021511 423279.2068625055 479717.5023407167 445424.91649955243 478123.96705496724 522918.58570615045 514799.14356661093 654665.738787583 498543.4794781295 0.897650037468128 0.8367319210328793 0.8490316778500245 0.9622380435962785 0.8934524967928955 0.9590416618335131 1.0488926387193682 1.0326063117012336 1.31315675710548 1.0 18.927359806326212 2.1761952995385596 1.0848917809049476 1.134850949833411 0.8786713821242732 0.6039186060269497 0.08244413411166907 0.3342663758726738 0.7437552865462951 0.05657603508783525 0.03025002144733883 150.035938614334 -2.1761952995385596 -0.25617956770913775 NKFEEAER ddPTM_BT-474_Trastuzumab_2h_R1 7 NKFEEAER 8 1 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;;;; 150.08 0.00045143 22983700000.0 11910440.0 12479400.0 12450800.0 11138700.0 9984300.0 13006800.0 14932000.0 12578600.0 18445700.0 11871700.0 False True 11846315.514414286 12894769.285043405 14203764.41570633 12548858.277923372 11255741.423417473 12107670.530713838 14209682.11422062 13517279.004836572 13900004.394716755 11114037.94212628 1.0658876257307353 1.1602236155922683 1.2780021527431407 1.129099823418687 1.0127499547895267 1.0894033827994527 1.2785346053535334 1.2162347362160002 1.250670950297069 1.0 23.40587973482618 2.253454913287814 24.989785328839034 1.2082982331727952 1.126644328851969 0.0774229279662485 0.09605870101937503 475.23189110056967 797347.0298801179 0.0336704259489197 0.028063090974817184 179.24824543627042 -2.253454913287814 -0.0816539043208262 NKGNECFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 NKGNECFQK 9 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 139.43 0.00010168 1264460000.0 1521110.0 1454820.0 1453720.0 1553670.0 1470930.0 1806370.0 1948300.0 1730980.0 2796700.0 1815170.0 False True 1512920.5127712092 1503242.804242737 1658391.1400392433 1750364.4626986254 1658244.2166148347 1681499.8936375992 1854053.285771234 1860154.5173383378 2107490.758860021 1699324.2965547785 0.8903071155038003 0.8846120821613752 0.9759120983566684 1.03003556545818 0.9758256384474524 0.9895108879727568 1.0910532436511113 1.0946436304769065 1.2401933892975943 1.0 20.69652976992492 3.239747241907958 0.5493553526329699 1.120728172201562 0.8724926248728014 0.5697119026881714 0.06543315049481792 0.7883836190150488 0.47997016730178327 0.04946379738803216 0.10237014715724242 1736.7897281119222 -3.239747241907958 -0.24823554732876063 NKHEAMITDLEER ddPTM_BT-474_Trastuzumab_2h_R1 9 NKHEAMITDLEER 13 1 P35579 P35579 MYH9 Myosin-9 0 ;;;;;;;; 207.64 3.1402e-08 11096770000.0 9950310.0 9642820.0 9045230.0 8616560.0 8440250.0 11395920.0 11244340.0 8060740.0 13833410.0 10978730.0 False True 9896738.636543361 9963775.434492221 10318719.761451444 9707415.612524198 9515065.808218854 10608146.873510174 10700408.316649843 8662273.35040834 10424351.463697147 10278058.052036362 0.9628996631890544 0.9694219845857095 1.0039561665451993 0.9444795469510796 0.9257649412024542 1.032115874399874 1.041092418672397 0.8427928025462076 1.0142335654186931 1.0 23.293064370051447 NKIFMEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKIFMEFR 8 1 F5H5U2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 0 ; 66.071 0.037633 428890000.0 124236.0 459680.0 461130.0 662510.0 527230.0 277480.0 329230.0 181567.0 75045.0 252900.0 False True 123567.12717991734 474980.17091757205 526053.0957861874 746383.6980713202 594369.6153629605 258298.46071766102 313303.8871192643 195116.45151854452 56551.1653014805 236759.70548141695 0.5219094479301758 2.0061697996784034 2.221886087907289 3.1524946213024543 2.510434003769328 1.0909730614525308 1.3232990237177635 0.8241117343924852 0.2388546868078409 1.0 17.853064041684487 2.6225942949155256 4.676847948132243 0.8879250853628683 2.1421992346927348 0.44249013417742755 0.6670169243582873 0.2277169538233799 7.803874368697591 0.23399677548446826 0.219517549969183 419.3670406390478 -2.6225942949155256 1.2542741493298664 NKKDELQSER ddPTM_BT-474_Trastuzumab_2h_R1 1 NKKDELQSER 10 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 75.416 0.021969 286690000.0 140090.0 130140.0 134320.0 133290.0 122110.0 163290.0 159710.0 153190.0 250340.0 145400.0 False True 139335.77100546216 134471.63122870857 153231.0884696307 150164.50033346826 137659.98469732574 152002.14664331425 151984.2171485519 164621.81568305806 188647.06138413784 136120.4475167972 1.023621164544498 0.9878870785530942 1.1257022090727555 1.1031737191059265 1.0113101096022958 1.1166738680061807 1.1165421501409412 1.2093834444876022 1.3858833468855507 1.0 17.054524273940842 2.015208143218344 1.9450563561426732 1.2196523254271354 1.0575421832215326 0.2816284049750024 0.09683903786814456 0.37732453477839806 2.6727117964072753 0.05381729948388191 0.028078314596194094 103.56383955521679 -2.015208143218344 -0.16211014220560283 NKKS(ph)PEIHR ddPTM_BT-474_Trastuzumab_2h_R1 10 NKKSPEIHR 9 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR 125.61 0.00025917 66786888000.0 10161769.0 6806555.0 6613129.0 6630150.0 6735089.0 9908154.0 10455066.0 9592836.0 16241857.0 9217239.0 True False 10107059.164782668 7033107.0685256235 7544200.080852285 7469526.310195401 7592762.662149917 9223226.63526574 9949314.515349338 10308702.133754184 12239268.972083507 8628986.915744677 1.1712915158488721 0.8150559430902405 0.8742857249078613 0.8656318966675343 0.8799135676397842 1.0688655256200235 1.1530107314446794 1.1946596088753658 1.4183900255719954 1.0 23.04075975938593 2.403651492725218 1.9977075795904096 1.2157146341388037 0.909347420546654 0.48203557756031656 0.13142406675114 0.253958023176266 2.0704215234829246 0.05453346127973563 0.04167059259765896 253.30950878041054 -2.403651492725218 -0.3063672135921497 NKKS(ph)PEIHRR ddPTM_BT-474_Trastuzumab_2h_R1 3 NKKSPEIHRR 10 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 NKKS(1)PEIHRR;NKKS(1)PEIHRR;NKKS(1)PEIHRR 152.4 1.2916e-05 4550320000.0 1675740.0 1563700.0 1346090.0 1490030.0 1662830.0 2046500.0 2292940.0 2019530.0 3889300.0 2023830.0 True False 1666718.002032215 1615746.8092233874 1535607.7715759743 1678667.645223781 1874581.54413442 1905030.271942819 2182021.7323185788 2170237.583565549 2930834.1289499355 1894667.4367119644 0.8796889468500412 0.8527864985252397 0.8104893459513359 0.8859959340077999 0.9893987239193799 1.0054694744998829 1.1516647671452536 1.1454451274740929 1.5468857870044734 1.0 20.853513209535034 2.4268751704581546 1.0372085954089916 1.2532074506950859 0.8524847876388308 0.5948248546159036 0.1306473013163814 0.34066557085321264 0.7303975957482699 0.07969475862053298 0.053592282194899046 267.22382151210854 -2.4268751704581546 -0.40072266305625504 NKKSPEIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 NKKSPEIHR 9 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 52.79 0.082028 125190000.0 118060.0 110630.0 69881.0 91484.0 106510.0 122300.0 127430.0 103680.0 183390.0 106300.0 False True 117424.3780776991 114312.2526727528 79719.6373834593 103065.86501993403 120073.41716576979 113845.68886323308 121265.7240701268 111417.12807637225 138195.99180009982 99515.84299199142 1.1799566234609387 1.1486839606227537 0.8010748337817404 1.035672933285892 1.2065758934025486 1.143995623615376 1.2185569696664853 1.1195918632306474 1.3886833256411364 1.0 16.602638601552353 3.2456232732920554 23.58309723874587 1.1819555387096032 1.0318516196902623 0.2090593892611451 0.1311402413673985 121.21193419523922 404735.77733876527 0.03621880243003602 0.047938097013132557 1760.4482912860053 -3.2456232732920554 -0.15010391901934095 NKLDFLRPYTVPNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 NKLDFLRPYTVPNKK 15 3 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 0 106.6 0.00053608 564160000.0 940920.0 883610.0 845660.0 884100.0 845000.0 1124700.0 1061400.0 1050900.0 1801000.0 1220000.0 False True 935854.1912660406 913020.4246964757 964721.5773915113 996026.9693511842 952605.741292606 1046952.1362590223 1010056.027058249 1129323.4943620714 1357167.6821635843 1142138.5555054506 0.8193876187393749 0.799395502669482 0.8446624735162506 0.8720719255558227 0.8340544469852282 0.9166594816472999 0.884355074250384 0.9887797666214779 1.188268862496261 1.0 20.123306247358858 1.6119347114093978 2.4426164531844177 1.0952549381336871 0.8497675434703542 0.770028625550207 0.053429669680664614 0.10939017409816959 1.4672926016080157 0.03685059180968826 0.014166547645087154 40.91991391617557 -1.6119347114093978 -0.24548739466333291 NKLDLETLTDILQHQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKLDLETLTDILQHQIR 17 1 P18440;F5H5R8 P18440 NAT1 Arylamine N-acetyltransferase 1 0 ; 246.95 6.361600000000001e-21 516200000.0 1127940.0 1007030.0 935390.0 906060.0 892830.0 1261540.0 1200270.0 1049070.0 1682700.0 1344990.0 False True 1121867.2963659158 1040548.3847875098 1067084.7814443707 1020767.1030995751 1006526.608281986 1174332.709145734 1142208.3546233317 1127356.93046952 1268021.1320248009 1259151.5866961272 0.8909707998776938 0.8263884950641982 0.8474633179348022 0.810678486915109 0.79936889165426 0.9326380727733121 0.9071253744915324 0.895330587977559 1.0070440647674093 1.0 20.26402054595554 1.658991166512393 0.7756402220828845 1.0057187207423903 0.8374721113614985 0.7044489996183729 0.037771749526483246 0.341793442075493 0.4088379084348724 0.03529178365293527 0.01572380441198852 45.602764032002526 -1.658991166512393 -0.16824660938089187 NKNDLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKNDLTR 7 1 P42574;A8MVM1;C9JXR7 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 0 ; 122.52 0.0039519 871500000.0 1515130.0 1578760.0 1480910.0 1484110.0 1416440.0 1488800.0 1717110.0 1649800.0 2340400.0 1697070.0 False True 1506972.7084267684 1631308.0722194258 1689409.2556995298 1671998.1738307746 1596815.2381023678 1385882.7602582315 1634046.8293027976 1772916.4535146528 1763639.7797532806 1588761.5396652757 0.9485203857240031 1.0267796843591228 1.0633497938623684 1.0523908919541414 1.0050691675471883 0.8723038200875713 1.0285035157932276 1.1159109842803567 1.1100720502869479 1.0 20.59947117333169 1.989325213583116 24.590938797412665 1.0842068368432296 0.9980682624674639 0.26602355027636637 0.05926434467187657 531.4968941432502 1224380.8097212575 0.024384562027948597 0.01685410146613 97.5720014538207 -1.989325213583116 -0.08613857437576566 NKNLQAPMYFFICSLAISDMLGS(ph)LYK ddPTM_BT-474_Trastuzumab_2h_R1 1 NKNLQAPMYFFICSLAISDMLGSLYK 26 1 R4GMM0;Q01718 R4GMM0 MC2R Adrenocorticotropic hormone receptor 1 NKNLQAPMYFFICS(0.035)LAIS(0.035)DMLGS(0.93)LYK 62.683 0.074396 587560000.0 333300.0 162410.0 151440.0 160800.0 127650.0 209190.0 194950.0 240760.0 464460.0 264280.0 True False 331505.5498331113 167815.71867108162 172761.43565992295 181157.26351280435 143905.47085917305 194729.1876802924 185519.52371867857 258726.73375450828 350000.0564451408 247413.42413850833 1.3398850567119027 0.6782805712964634 0.6982702586226959 0.7322046657071765 0.5816397043137446 0.787059911394614 0.7498361269791893 1.045726337022305 1.41463648411091 1.0 17.916564254511158 1.578280868779667 3.78030541895185 1.2149310187171807 0.7768150275814177 0.3772609662373583 0.21527386636113985 0.1692880827586849 5.535870622264292 0.1283582832230053 0.05439385131784345 37.868741187889526 -1.578280868779667 -0.43811599113576294 NKPEWFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NKPEWFFK 8 1 Q5TA02;P78417-3;P78417;Q5TA01;P78417-2 Q5TA02 GSTO1 Glutathione S-transferase omega-1 0 ; 105.52 0.0039873 2195100000.0 2890100.0 2551600.0 2699600.0 2432500.0 2420400.0 3429800.0 3321800.0 2814300.0 4108200.0 2960100.0 False True 2874540.0227202936 2636528.4635252287 3079680.2146561584 2740454.2505901563 2728623.5931652403 3192705.998880761 3161111.8434917047 3024317.356725838 3095789.157059657 2771183.883730888 1.0372967451190052 0.9514087026139996 1.1113229377293927 0.9889110090019144 0.9846418381632805 1.1521090381712136 1.1407080786121817 1.0913448849356588 1.1171359559480938 1.0 21.40207101429896 2.7437098176547767 24.99652869422064 1.1079621227313563 1.015132573695308 0.3714030602853321 0.05518984263620074 419.0101246939793 2034064.9713887381 0.01628394714102967 0.0167912617229576 554.2552527280058 -2.7437098176547767 -0.09282954903604823 NKPGPNIES(ph)GNEDDDASFK ddPTM_BT-474_Trastuzumab_2h_R1 10 NKPGPNIESGNEDDDASFK 19 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK 319.92 4.076199999999998e-62 74061720000.0 16852770.0 10541659.0 9927560.0 8546448.0 9844395.0 15362878.0 14950541.0 14756150.0 24392750.0 14458500.0 True False 16762036.558838777 10892531.747247575 11325274.156101584 9628427.44051294 11098020.350949397 14300878.404184872 14227326.215217141 15857328.843211448 18381483.608603984 13535746.151455382 1.2383533475941035 0.8047234061105967 0.836693746275958 0.7113333341788238 0.819904586475724 1.0565267879707705 1.0510928659582908 1.171514940201981 1.3579955920366888 1.0 23.690271081822335 2.3156388124827476 1.7273861275272966 1.1815517739637529 0.8693812752503319 0.3836934578696195 0.15711422417318655 0.349630406046052 2.1105497848139736 0.0776636862146161 0.05234086264275801 206.84204004261375 -2.3156388124827476 -0.31217049871342095 NKPLS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 2 NKPLSPIK 8 1 P35251-2;P35251;A0A1W2PP02;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 NKPLS(1)PIK;NKPLS(1)PIK 90.653 0.007899399999999999 1298660000.0 2939300.0 2136660.0 2542400.0 1634400.0 982540.0 2733400.0 3129100.0 2127660.0 6839200.0 2601200.0 True False 2923475.135386934 2207777.436461756 2900347.821063048 1841314.872421194 1107660.645029158 2544446.4917314933 2977733.478677189 2286436.793238562 5153770.800584781 2435189.189000639 1.2005125304398543 0.9066143388094585 1.1910153979672118 0.7561280580326651 0.4548560949729427 1.044866042944159 1.2227934864884977 0.9389154664311226 2.116373883336679 1.0 21.215602428461505 1.289354545901104 24.972180729098223 1.5581908225833767 0.9607226564573176 0.3367568336916459 0.3332572952037889 93.64636537742575 46039.79107785013 0.2117092288985904 0.07730927215642866 19.469488677628227 -1.289354545901104 -0.5974681661260591 NKPLS(ph)PIKLTPTSVLDYFGTGSVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKPLSPIKLTPTSVLDYFGTGSVQR 25 2 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 NKPLS(1)PIKLTPTSVLDYFGTGSVQR;NKPLS(0.997)PIKLT(0.003)PTSVLDYFGTGSVQR 240.23 7.5776e-39 1356720000.0 572340.0 479650.0 553570.0 523230.0 502330.0 884160.0 874520.0 696560.0 1416270.0 821790.0 True False 569258.5850329525 495614.86029545165 631507.8442833037 589470.8643520188 566298.7479568229 823040.1002887662 832216.1266091767 748540.8442600115 1067249.2355457093 769342.6586301847 0.7399285333358713 0.6442056146709638 0.8208408011687588 0.7662006750042591 0.7360813047402288 1.0697965218179761 1.0817236211637327 0.9729615742259621 1.3872222261091662 1.0 19.55326677977617 2.7257304474721136 5.806718038969195 1.0898669251520723 0.7409767468091284 0.7192576809780553 0.11263050017581536 0.09250492274065648 12.3114834533837 0.0353863557679577 0.03474379247863658 531.7780993636683 -2.7257304474721136 -0.3488901783429439 NKPQER ddPTM_BT-474_Trastuzumab_2h_R1 1 NKPQER 6 1 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-3;Q8IXQ4-2 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 0 64.866 0.096264 11769000.0 20353.0 18918.0 16484.0 13391.0 15838.0 18669.0 26255.0 35090.0 34162.0 26128.0 False True 20243.421709430888 19547.674193827515 18804.803918503512 15086.299226989846 17854.875420819306 17378.455972098942 24984.945346160093 37708.59398340958 25743.232847347255 24460.48867069379 0.8275967819761758 0.7991530527862128 0.7687828387923265 0.6167619719333245 0.7299476172040382 0.7104705145535436 1.0214409729309561 1.541612454725338 1.0524414779247777 1.0 14.578165605808218 2.042677535347346 4.579190794621012 1.264943265516753 0.7432638952073543 0.650193977890904 0.14925976755044018 0.10049867181352094 4.7288300186905445 0.05883453600892015 0.04077226987153654 110.32591432542628 -2.042677535347346 -0.5216793703093987 NKPRS(ph)PVVELSK ddPTM_BT-474_Trastuzumab_2h_R1 3 NKPRSPVVELSK 12 2 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 1 NKPRS(1)PVVELSK;NKPRS(1)PVVELSK;NKPRS(1)PVVELSK 133.45 8.505299999999999e-05 1031170000.0 1613770.0 1552450.0 1481390.0 1566180.0 1569500.0 1993450.0 1870850.0 1660410.0 2435390.0 1782620.0 True False 1605081.6416267008 1604122.3597741586 1689956.8355272945 1764458.2274159465 1769366.5218446688 1855647.4935765516 1780349.838158964 1784318.2255911396 1835220.7670540651 1668851.6654222365 0.9617880815192755 0.9612132659904793 1.0126465224815042 1.0572888315807987 1.0602299524307937 1.1119307557553677 1.06681131405919 1.0691892290736869 1.0996907664587048 1.0 20.67042429690058 3.947331776912692 1.67747090261331 1.073009418442401 0.9559401008941626 0.6949752461764971 0.027992267376299278 0.19069640025057163 1.021678438393689 0.007455937443592747 0.02183873330834952 8857.920474452902 -3.947331776912692 -0.11706931754823846 NKPSDLGTK ddPTM_BT-474_Trastuzumab_2h_R1 4 NKPSDLGTK 9 1 P31948;P31948-2;P31948-3;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;;; 124.1 0.0015582 4623000000.0 5458330.0 4273300.0 4126240.0 3643910.0 3877980.0 5284730.0 5790810.0 5521390.0 8354460.0 5455030.0 False True 5428942.957757467 4415534.207235595 4707178.726078981 4105228.6323814937 4371817.76641172 4919409.054016302 5510686.39725756 5933424.158850327 6295615.277028525 5106885.315113853 1.0630634178704745 0.8646237255745297 0.9217318258837851 0.8038615279321133 0.8560634313586999 0.9632895102338184 1.0790699334775848 1.161847935235657 1.232770052304997 1.0 22.284012230259307 2.2336645470245546 2.416135019800866 1.1456127356809833 0.8961828905602942 0.6027970404419477 0.08344580403064498 0.1774864060488653 2.1155859492949167 0.03607573203046375 0.024959904940294337 171.26339425783777 -2.2336645470245546 -0.2494298451206891 NKPYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 NKPYPK 6 1 P27635;X1WI28;A0A087WV22;Q96L21;A6QRI9 P27635 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 ; 91.26 0.043863 5246000000.0 2578400.0 2057150.0 2175200.0 1867710.0 2100400.0 2122300.0 2584600.0 2285000.0 3768500.0 2257400.0 False True 2564518.180887168 2125620.9941765643 2481449.2528226636 2104161.894499378 2367873.4899538346 1975590.396356825 2459573.0238691834 2455518.302994898 2839803.6703128675 2113330.799342629 1.213495862401137 1.0058155565791016 1.174188751517056 0.9956613962915303 1.1204462125334962 0.9348230750109499 1.1638372112090811 1.1619185712708628 1.3437572911899143 1.0 21.011087179104287 2.029607112828998 24.91976423274592 1.1806317855168962 1.0720026685132946 0.1441321679579931 0.11019256683941467 313.88863460171285 264193.01045765186 0.03827877534082095 0.02827036780688585 107.05503870505653 -2.029607112828998 -0.10862911700360156 NKQDDDLNCEPLS(ph)PHNITPEPVSK ddPTM_BT-474_Trastuzumab_2h_R1 6 NKQDDDLNCEPLSPHNITPEPVSK 24 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73;F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK 276.29 2.9087999999999996e-52 5926360000.0 5587500.0 3878010.0 3550680.0 3264400.0 3127040.0 5284830.0 5068630.0 4504000.0 7448740.0 4937370.0 True False 5557417.520829607 4007087.21854345 4050584.8809361816 3677672.705293524 3525250.0085818185 4919502.141251682 4823441.002853069 4840111.350848582 5613097.83500233 4622262.819504874 1.202315345933727 0.8669102937276681 0.8763207630348616 0.7956433567071524 0.762667582143119 1.0643060192277531 1.0435237439332248 1.047130277928905 1.2143614619481098 1.0 22.140167862365647 2.6385250149869277 8.988014844341755 1.072435789789574 0.8918216964096931 0.33179275900461014 0.12251302730104521 0.42190132394648283 34.91954571433558 0.04005773674372196 0.03774277822802366 435.0358175962834 -2.6385250149869277 -0.18061409337988088 NKQGLETDNK ddPTM_BT-474_Trastuzumab_2h_R1 5 NKQGLETDNK 10 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;;;; 61.78 0.053697 16702220000.0 11396300.0 15510900.0 15320500.0 13675700.0 15167700.0 9118900.0 13878400.0 14959100.0 11255900.0 19679000.0 False True 11334943.587047968 16027170.929962935 17477493.231826782 15407042.217798898 17099216.688998688 8488531.906581664 13207048.77136349 16075424.002770646 8482034.266332654 18423069.37196045 0.6152581504306514 0.8699511794899918 0.9486743429641091 0.836290734553066 0.9281415785701465 0.4607555741770719 0.7168755924821277 0.8725703452670663 0.46040288374759875 1.0 24.135010105597814 4.759802568951368 22.181580804441136 0.785634936533575 0.6152573387056585 0.07607986455646176 0.18058951424621889 3025.14186092733 3158716.7765147807 0.04212101229844286 1.5324433257495116 57517.840076391025 -4.759802568951368 -0.1703775978279165 NKS(ph)EDEDEDEGDATR ddPTM_BT-474_Trastuzumab_2h_R1 2 NKSEDEDEDEGDATR 15 1 Q9BZI1 Q9BZI1 IRX2 Iroquois-class homeodomain protein IRX-2 1 NKS(1)EDEDEDEGDATR;NKS(1)EDEDEDEGDATR 226.71 5.0142e-13 773790000.0 956950.0 730810.0 637830.0 584560.0 631740.0 991860.0 957310.0 837840.0 1374110.0 838880.0 True False 951797.8875271409 755134.5690660251 727630.9198822558 658565.2360637123 712188.3443836579 923295.0527872975 911001.2580206633 900363.8752653147 1035479.0026306512 785341.9601986979 1.2119534365467093 0.9615360025777433 0.9265147626877842 0.8385713096204486 0.9068512577673407 1.175659903048726 1.16000583718992 1.1464609315380467 1.3185071664433499 1.0 19.58296145565024 2.7310269917071834 24.55171514695377 1.1671146015414149 0.9590501316489477 0.40371122771548096 0.11561220413159802 430.443340452982 1402789.4148140876 0.037127647700116145 0.035639380507643995 538.3032374010689 -2.7310269917071834 -0.20806446989246719 NKS(ph)NEDQSMGNWQIK ddPTM_BT-474_Trastuzumab_2h_R1 4 NKSNEDQSMGNWQIK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK 278.02 8.100499999999999e-34 3260540000.0 3868850.0 2380850.0 2137720.0 2108020.0 2018200.0 3487940.0 3240970.0 3124890.0 4452330.0 3071680.0 True False 3848020.541469647 2460095.1529957848 2438692.3946046666 2374895.1158598405 2275205.8071914087 3246826.917527601 3084191.8993922854 3358085.1596698957 3355112.929665404 2875642.7526024445 1.3381427640784673 0.8554940111282631 0.8480512373790731 0.8258658394581769 0.7911990476328664 1.1290786780065905 1.0725226200650637 1.1677685472685517 1.1667349592118288 1.0 21.455453027068675 2.7152151186536395 24.20425028226786 1.1186955728984993 0.9169816553411947 0.24559302786081716 0.1520120098462659 675.9180605585772 700780.0714251191 0.049072846978107425 0.04629622057802353 519.0570792906051 -2.7152151186536395 -0.2017139175573046 NKTEDLEATSEHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 NKTEDLEATSEHFK 14 1 C9JXZ5;Q9BV40 C9JXZ5 VAMP8 Vesicle-associated membrane protein 8 0 166.9 2.2426e-06 539530000.0 892760.0 787890.0 896020.0 758130.0 891110.0 1317500.0 1065400.0 1070400.0 1516200.0 1054500.0 False True 887953.4793549599 814114.4423604372 1022171.827654545 854109.1802671799 1004587.5764772256 1226424.3260614027 1013862.5317767642 1150278.683381065 1142552.8260391061 987200.9071971286 0.8994658259341018 0.824669463353594 1.0354243196116037 0.865182734375899 1.0176120880292356 1.242324958496523 1.0270072934346601 1.1651920850102828 1.1573660616693053 1.0 19.9129841947023 3.0062115272801533 5.5827621331596085 1.124911980742655 0.9118833204811927 0.597963169752518 0.08184210717989332 0.10542886494850932 11.33490673504793 0.022922641988348327 0.026434237070004602 1014.4053412552805 -3.0062115272801533 -0.2130286602614624 NKYETEINITK ddPTM_BT-474_Trastuzumab_2h_R1 1 NKYETEINITK 11 1 P15924;P15924-3 P15924 DSP Desmoplakin 0 105.78 0.0022064 408200000.0 636330.0 498690.0 501030.0 435570.0 476760.0 727630.0 777890.0 504670.0 811660.0 677820.0 False True 632904.0699829087 515288.5951855296 571570.6689691705 490713.11734000174 537472.560022087 677330.6507567809 740260.488871624 542331.0380623346 611637.2686867825 634560.9472891021 0.9973889390557805 0.8120395643426939 0.9007340767044815 0.7733112468335305 0.8469991138254175 1.0674004658660363 1.1665711418801916 0.8546555541736669 0.9638747409523836 1.0 19.275399210810534 2.7522972034496793 24.219461196870313 1.0024445166116385 0.859861304728455 0.3777536812706451 0.09220613528752764 602.8354837525987 1062879.2448968054 0.029494183258637428 0.0311170055817251 565.3237139681406 -2.7522972034496793 -0.14258321188318346 NKYNTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 NKYNTPK 7 1 P46777;A0A2R8Y4A2;R4GNJ2 P46777 RPL5 60S ribosomal protein L5 0 ; 94.114 0.013168 3565200000.0 2044800.0 1744150.0 1629410.0 1681460.0 1760800.0 2327250.0 2320420.0 2083120.0 3693700.0 2297240.0 False True 2033791.0239986393 1802202.978389059 1858816.7649143916 1894332.663596023 1985027.4429207358 2166372.685257231 2208172.419734784 2238572.992269029 2783437.128044217 2150628.1764338873 0.9456730113947525 0.8379891038986677 0.8643134063260672 0.8808276039315888 0.9229989008198776 1.0073208883785065 1.0267569466128332 1.0408926177006428 1.2942437742351334 1.0 21.03632668711911 2.3441573950697663 1.014532982256507 1.1215501246416362 0.8755723941375849 0.6168728035208333 0.07670234336776362 0.341501948599824 0.6871351433718008 0.05037612772489569 0.031303540068282176 220.88050932722675 -2.3441573950697663 -0.24597773050405125 NLANTVTEEILEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NLANTVTEEILEK 13 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;; 251.3 4.7419e-18 164632000.0 196302.0 186731.0 162052.0 165492.0 168368.0 222505.0 187011.0 190905.0 301611.0 214680.0 False True 195245.13184320246 192946.228453727 184867.5130187656 186443.27023172297 189808.6668046787 207123.75307043066 177964.56347860376 205151.30049594791 227283.0104303392 200978.93860320494 0.9714706088117879 0.9600320799517356 0.9198352539006671 0.9276756635670174 0.9444206846938333 1.0305744199363969 0.8854886224171045 1.0207601946837848 1.130879742971808 1.0 17.61668479790695 1.5227831430433625 5.745420299667122 1.0689462807428314 0.9500842872649755 0.5197055797804394 0.04618084417545075 0.09744941923074112 6.932207890865777 0.02468380609011472 0.011048751725537723 33.32599639805394 -1.5227831430433625 -0.11886199347785587 NLAPDEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLAPDEKR 8 1 O95232;J3KPP4;D6RDI2;C9JL41;O95232-2;E7EN55 O95232 LUC7L3 Luc7-like protein 3 0 95.502 0.015401 514030000.0 164510.0 184630.0 169810.0 171330.0 177660.0 220040.0 213370.0 203530.0 305300.0 219040.0 False True 163624.29643877927 190775.29793880793 193717.77198502075 193020.36043313923 200283.94792668003 204829.152718445 203048.47794744564 218718.44210439897 230062.90581040675 205060.67967042103 0.7979311133746391 0.9303358315471647 0.9446851161147476 0.9412841152353864 0.9767057645989554 0.9988709344358551 0.9901872863865981 1.0666035168513488 1.1219259888349633 1.0 17.645691356391783 6.827125324433901 0.3001938146355122 1.0630363878192868 3.7059504541687803e-11 0.7616136469606218 0.03989813764260593 12.773558691466848 0.34327890140779715 0.041900016403712624 6.357382615071942 6716226.352249427 -6.827125324433901 -1.0630363877822273 NLAPHHAS(ph)PDPPAPPASASDPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLAPHHASPDPPAPPASASDPHR 23 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 NLAPHHAS(1)PDPPAPPASASDPHR 90.1 0.0094043 741560000.0 129430.0 133490.0 103450.0 100760.0 96814.0 152320.0 99905.0 54050.0 167080.0 126960.0 True False 128733.16326102492 137933.1339535911 118014.8607964808 113516.20566884444 109142.68903846455 141790.476922712 95072.21347583794 58083.48546033878 125905.37275729695 118857.3041040754 1.0830900484525703 1.160493543020396 0.9929121452489202 0.955062934705686 0.9182665706677613 1.1929471057037904 0.7998853262950466 0.4886825079717352 1.0592985740872098 1.0 16.858871037969067 2.1200279377791498 7.199666053452068 0.756578244045675 1.0417893418552349 0.2278994087088969 0.1693491776606116 0.23095164663307075 13.627159950362405 0.06358824914450874 0.04687027010262031 131.8341543571848 -2.1200279377791498 0.2852110978095599 NLATS(ph)ADT(ph)PPSTVPGTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-2;Q96Q15;Q96Q15-4;Q96Q15-3 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 2 NLAT(0.004)S(0.996)ADT(0.992)PPS(0.003)T(0.005)VPGTGK;NLATS(1)ADT(0.979)PPS(0.021)TVPGTGK 293.63 1.6059999999999995e-48 355110000.0 402530.0 369400.0 312550.0 319300.0 352270.0 470310.0 429120.0 407970.0 590650.0 491210.0 True False 400362.8232052869 381695.2556929844 356554.3232666988 359723.3472614331 397129.49643212644 437798.5766906558 408361.82620240794 438414.7930296838 445092.22180450923 459860.55725396133 0.8706178794633688 0.8300239054470384 0.7753531318185853 0.7822444034111263 0.8635867768341976 0.952024629607184 0.8880122892924848 0.9533646365490878 0.9678851877672644 1.0 18.81083693591984 2.9048996306277557 3.2393476005451096 0.9446431556613646 0.8130871830064309 0.7624137070563554 0.03628944922176143 0.13020379309967278 2.6047536023246347 0.011887146178626195 0.012987803709396737 803.3404415077813 -2.9048996306277557 -0.13155597265493368 NLATTVTEEILEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NLATTVTEEILEK 13 0 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 158.11 0.00011127 17603000.0 36970.0 38350.0 38464.0 42152.0 38473.0 41917.0 41639.0 38203.0 51259.0 49739.0 False True 36770.957627753145 39626.45656693546 43879.39686491866 47488.43887805809 43372.30850266329 39019.376452004435 39624.76249357306 41053.901850903276 38626.906285409896 46564.614436299664 0.7896759819209019 0.8509993488970988 0.9423335164719472 1.0198396239922103 0.9314435226774305 0.8379619787335058 0.8509629677655698 0.8816544998362429 0.8295334719940923 1.0 15.506946412333834 2.3055685914929636 0.007011986866092021 1.7874663173237262 1.7479840432563196e-06 0.09304128225456709 0.06922692759965854 15608.753666374689 61.16308623319676 7698.969897179532 7887.479062771137 202.1010600652589 -2.3055685914929636 -1.787464569339683 NLDDGIDDER ddPTM_BT-474_Trastuzumab_2h_R1 5 NLDDGIDDER 10 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ;;;; 255.39 9.0617e-17 12052940000.0 4159080.0 4128820.0 3597780.0 3571030.0 3594110.0 4142130.0 4149300.0 3806870.0 4923970.0 3750930.0 False True 4136687.9753972236 4266245.277775607 4104316.151535647 4023122.0318540437 4051798.6045410275 3855794.302625212 3948582.507134724 4090957.970294174 3710523.5713176215 3511542.436067263 1.1780259104685886 1.214920609802902 1.1688072196935368 1.145685152636151 1.1538515277288866 1.098034374587679 1.1244581488119283 1.165003141717924 1.0566648812802635 1.0 21.743673439190932 -4.99999999197279 0.0774085812708304 0.47445798427859504 1.313461455738593 0.7870691285807987 0.027836882779323592 123.5841057276998 0.6808019722113196 11.070931641129437 1.11625521031107 1.0000000184833342e-05 4.99999999197279 0.8390034714599981 NLDDGIDDERLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLDDGIDDERLR 12 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ; 124.3 0.00029678 2813120000.0 2252520.0 2755900.0 2394680.0 2985100.0 2584910.0 2744800.0 2939300.0 2247280.0 3548000.0 2795280.0 False True 2240392.6825984963 2847628.465523269 2731830.1290683066 3363013.353930802 2914082.966538077 2555058.4365642043 2797114.829783602 2414983.4450566135 2673642.940764245 2616882.8372403886 0.8561302977404533 1.0881757581956597 1.0439252725388097 1.2851218656304992 1.1135702848703377 0.9763747922542146 1.0688727787038703 0.9228473704246208 1.021689967436109 1.0 21.319417902989407 2.7352195366846987 24.756601273846055 0.9933212374066033 1.0876662973565059 0.12393341513963696 0.10343759018552222 493.54608666230354 3657038.924792783 0.03373202416884719 0.03304170846156064 543.5250149865133 -2.7352195366846987 0.09434505994990261 NLDDTIDDEKLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLDDTIDDEKLR 12 1 B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0YEU6;P0CB38 B1ANR0;P0CB38 PABPC4;PABPC4L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like 0 83.69200000000002 0.011543 1050800000.0 257230.0 231780.0 201440.0 167510.0 183810.0 266450.0 279240.0 205550.0 360080.0 272410.0 False True 255845.10226093966 239494.6571860311 229801.0010521323 188716.74882481273 207217.11397277383 248030.9386558337 265732.0943996097 220889.18476175106 271343.10882479924 255024.56057806525 1.0032175006243105 0.9391042833018418 0.9010936065578994 0.7399944083701102 0.812537872834969 0.9725766729824803 1.0419862847612547 0.8661486731358761 1.0639881437683676 1.0 17.96027666943421 2.675527990789558 11.239162414109499 0.9757606584050836 0.8760193045120247 0.300057302642191 0.08252414968033135 1.3891534171430648 245.15262904950552 0.028591507829191117 0.02695578936928273 473.72683944205994 -2.675527990789558 -0.09974135389305894 NLDFGIDMDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 NLDFGIDMDSR 11 0 Q8NE71;Q8NE71-2;H0YGW7 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 ;;;; 169.82 3.8239e-05 1017550000.0 901380.0 1075130.0 1040098.0 1089970.0 1008380.0 1085240.0 1044780.0 1027750.0 1208810.0 1124940.0 False True 896527.0702327316 1110915.052120191 1186534.7577061197 1227960.0902428594 1136791.2158634784 1010219.9131801722 994239.9999528156 1104445.923808755 910914.9727241338 1053145.366090411 0.8512852062967402 1.0548544274037288 1.1266581004965057 1.165992967145089 1.0794247902201626 0.959240714252401 0.9440672028437349 1.0487117537332826 0.8649470453501791 1.0 20.00627315522559 2.7380387413772946 24.60268283941296 0.9715989054960121 1.06567511117345 0.20532646765269746 0.08893262818474794 64.41449979153072 3036605.8558724136 0.02894649824698928 0.028815837978193582 547.0647618033342 -2.7380387413772946 0.0940762056774378 NLDIERPTYTNLNR ddPTM_BT-474_Trastuzumab_2h_R1 13 NLDIERPTYTNLNR 14 1 P68363;F8VQQ4;F8VVB9;C9JDS9;P68366-2;P68366;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;;;;;;;;;;; 278.62 3.1746e-33 275689695000.0 50985908.0 56283379.0 53904060.0 53680043.0 51357469.0 61463295.0 58172886.0 54671829.0 69812560.0 58405622.0 False True 50711405.53639496 58156737.24599388 61493283.10551135 60475930.93986127 57897538.2575823 57214482.08568374 55358841.26217484 58751718.49790246 52608190.02837661 54678125.20039135 0.9274532612546854 1.0636198119970952 1.1246413969049405 1.1060351963097013 1.058879360720435 1.0463870492266665 1.0124495135721774 1.0745013345388432 0.9621432672676947 1.0 25.704460440980164 1.2384664371075542 24.999999996530878 0.9810716136077351 1.0553715605784564 0.22727467281834224 0.05178232120241149 3.534135593487407 935636.303473251 0.04090358735685255 0.012691416266332009 17.31675199267692 -1.2384664371075542 0.07429994697072129 NLDKDMYGDDLEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLDKDMYGDDLEAR 14 1 Q13573;G3V4X8;G3V3A4 Q13573 SNW1 SNW domain-containing protein 1 0 ;; 218.2 4.9897e-12 1186530000.0 1790860.0 1592600.0 1442250.0 1383910.0 1509130.0 2077270.0 1897650.0 1735600.0 2614910.0 1859290.0 False True 1781218.208743252 1645608.7282529694 1645306.2637382704 1559112.8641045094 1701308.7601856946 1933673.2142676057 1805853.4197730245 1865119.2851982242 1970500.468498821 1740628.5203817459 1.0233189838533752 0.945410642755677 0.9452368753428388 0.8957183257933592 0.9774105963819162 1.110905165361488 1.0374720387650398 1.0715205819959652 1.1320626115368146 1.0 20.731176909597828 2.873522675146702 5.1792458051205665 1.071253220627682 0.9498474869230693 0.6174237885999048 0.04470285192416106 0.14360156184074718 5.46886289520517 0.01339632837872964 0.014295576877556738 747.347653280848 -2.873522675146702 -0.1214057337046126 NLDQEQLSQVLDAMFER ddPTM_BT-474_Trastuzumab_2h_R1 1 NLDQEQLSQVLDAMFER 17 0 P13861-2;P13861;H7C1L0 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 0 149.3 7.6785e-07 65742000.0 40843.0 47396.0 37429.0 43097.0 41356.0 44278.0 42088.0 42125.0 59778.0 47587.0 False True 40623.105826083905 48973.54720851296 42698.67786129993 48553.075781165055 46622.441463783485 41217.16607920065 40052.042648226496 45268.581406415746 45046.51288416145 44549.95691871958 0.9118551090902258 1.099295052021355 0.9584448743508941 1.0898568514835845 1.0465204612620638 0.9251898078016207 0.8990366190768841 1.0161307560635193 1.0111460481622423 1.0 15.443136416163545 2.753847917688596 24.684102316552277 0.9690773036350893 1.0258618791653409 0.1394893151371207 0.06263305263538733 1259.0115249901514 2032897.7912198142 0.018715021325684866 0.019786296246786794 567.3458960349792 -2.753847917688596 0.056784575530251624 NLDSATS(ph)PQNGDQQNGYGDLFPGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLDSATSPQNGDQQNGYGDLFPGHK 25 0 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 NLDS(0.002)AT(0.037)S(0.961)PQNGDQQNGYGDLFPGHK;NLDSATS(1)PQNGDQQNGYGDLFPGHK 227.59 3.3779000000000004e-34 288460000.0 248598.0 193549.0 197723.0 183114.0 170929.0 243612.0 230071.0 214572.0 280300.0 263341.0 True False 247259.57598983453 199991.161462159 225560.6797608753 206296.2136248987 192695.79497444286 226771.67584096422 218941.58677342994 230584.45221453838 211223.82082756984 246534.35192242725 1.002941675518045 0.8112101210345194 0.9149259646860435 0.8367848618914187 0.7816184376409951 0.9198380431475066 0.8880774020584383 0.9353035405268489 0.8567723693695718 1.0 17.911429159154352 NLDSLEEDLDFLR ddPTM_BT-474_Trastuzumab_2h_R1 7 NLDSLEEDLDFLR 13 0 P61758;P61758-2 P61758 VBP1 Prefoldin subunit 3 0 ;;;;;; 340.66 1.4674e-62 1218123000.0 369918.0 392722.0 360428.0 354968.0 354874.0 394465.0 380303.0 383040.0 451498.0 389410.0 False True 367926.40258975356 405793.5143645382 411173.12950366293 399906.91240431106 400065.1003970093 367196.5630207298 361906.290991458 411624.38983770896 340232.36766323936 364557.52040932555 1.0092410168267698 1.113112449055811 1.1278690096476334 1.0969651975778614 1.097399115365432 1.0072390294086957 0.9927275415553333 1.1291068399179824 0.9332748568215685 1.0 18.4757869374451 2.747546495785446 24.149065089013032 1.027716845449823 1.0928726171319694 0.30632209952660305 0.055024465983535456 599.3514300647913 1610724.4738862668 0.017099665908446665 0.017867269511342307 559.1733897501314 -2.747546495785446 0.06515577168214648 NLDSLEEDLDFLRDQFTTTEVNMAR ddPTM_BT-474_Trastuzumab_2h_R1 4 NLDSLEEDLDFLRDQFTTTEVNMAR 25 1 P61758;P61758-2 P61758 VBP1 Prefoldin subunit 3 0 ;;; 323.48 3.014299999999999e-75 1130557000.0 264990.0 348440.0 323030.0 306673.0 351493.0 319719.0 340407.0 264679.0 406594.0 327741.0 False True 263563.323283157 360037.61476357194 368509.81617290643 345497.77035610867 396253.5500877665 297617.57806757174 323940.21292897814 284430.69099272916 306394.3567804668 306824.288786813 0.8590041040273886 1.1734325733701367 1.2010451246542404 1.1260443940804397 1.291467346521222 0.9699935400953924 1.0557841239031034 0.9270149117508644 0.9985987680178576 1.0 18.227053168246627 2.6819881934923564 24.97224390614701 0.9864103183731757 1.1363060726636192 0.296354964411362 0.10751258180578588 336.82673631064904 148681.9022106685 0.034231942810328535 0.032274158201858055 480.82627677483146 -2.6819881934923564 0.14989575429044344 NLDSTTVAVHGEEIYCK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLDSTTVAVHGEEIYCK 17 0 P21291;E9PS42;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 ; 264.23 1.8684000000000003e-27 1117670000.0 1214230.0 1067440.0 919860.0 943320.0 936700.0 1251540.0 987020.0 1056850.0 1583580.0 1228030.0 False True 1207692.7205936343 1102969.0951188947 1049368.2924335487 1062744.215279222 1055983.1927441233 1165023.9856082646 939274.0718174422 1135717.5135755606 1193327.9278848474 1149656.0740306214 1.0504817465622915 0.9593904821047523 0.9127671450075759 0.9244018618136014 0.9185209530028515 1.0133673991072514 0.8170044007373498 0.9878758867369847 1.0379868856788754 1.0 20.132770904841134 1.4949342690683638 12.233011863446592 1.0169771703459713 0.9401657597425257 0.21832958268717118 0.059383293209617743 0.13494386506055625 63.12956572760375 0.03097901247973264 0.0143671535503434 31.25606267490643 -1.4949342690683638 -0.07681141060344565 NLEAQHK ddPTM_BT-474_Trastuzumab_2h_R1 6 NLEAQHK 7 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7EPK1 SEPT7;DKFZp586I031 Septin-7 0 ;;;;; 133.6 0.0032559 3761080000.0 3814140.0 3364870.0 3257420.0 2970880.0 3003150.0 3321420.0 3936780.0 3637190.0 5365630.0 3832410.0 False True 3793605.094030794 3476867.6638431316 3716036.4219977953 3346993.1033888087 3385583.3514353796 3091818.053181685 3746342.911439964 3908615.587076592 4043342.3822584096 3587822.312708724 1.0573559009857176 0.9690746533147502 1.035735913909369 0.9328759374546354 0.9436318346767127 0.8617533934804684 1.0441829569345538 1.089411695008295 1.126962828659644 1.0 21.774677011721344 2.0143943382697778 24.99594646073526 1.07824395316838 0.9661890498414193 0.40870926891353543 0.058568121861238026 212.29839231440764 368657.1976056729 0.02215915952576822 0.01635922739558322 103.36995763187103 -2.0143943382697778 -0.11205490332696078 NLELPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLELPR 6 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 106.42 0.07477400000000001 50527000.0 72644.0 77810.0 73960.0 76451.0 74592.0 77044.0 74525.0 66212.0 92154.0 84495.0 False True 72252.8927755071 80399.85881286168 84372.9251281557 86129.68876130227 84090.84905857772 71718.12962206818 70919.94103685318 71153.07565772343 69443.88150033492 79102.45676019098 0.9134089601610076 1.0164015392923123 1.0666283777246364 1.0888370891237327 1.0630624193318 0.9066485740068818 0.8965580076969781 0.8995052564983272 0.8778979104386448 1.0 16.27143488209459 2.7305550983213025 24.293376061559407 0.9075238453171527 1.0342712317478648 0.5193026645917844 0.05421735484746378 308.7737091057721 936995.726490449 0.017758764153490092 0.017021245147158314 537.7186483927234 -2.7305550983213025 0.12674738643071215 NLEQILNGGES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 NLEQILNGGESPK 13 0 Q13033-2;Q13033;G3V340;G3V3G7 Q13033-2 STRN3 Striatin-3 1 NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK 239.33 8.722600000000001e-17 1560899000.0 3040580.0 2086160.0 1823700.0 1684640.0 1825770.0 2624470.0 2418370.0 2275120.0 3727970.0 2341960.0 True False 3024209.8551201997 2155596.574489648 2080461.1081154377 1897915.25126997 2058270.9873133763 2443046.5662378543 2301384.2040294493 2444901.007225274 2809261.7457386935 2192494.1077471706 1.3793468563651616 0.9831709772322099 0.9489015732193465 0.8656421217113847 0.9387806243312047 1.1142773691410879 1.0496649436354313 1.115123182582897 1.2813086866743115 1.0 21.064141534805877 2.0231936123158527 1.6280397622128406 1.1435360823781124 1.015285304733113 0.06943577863525308 0.14654705813611044 0.880459470694122 4.3703356335503685 0.0939245586899068 0.046839768705104236 105.48570561752395 -2.0231936123158527 -0.12825077764499948 NLETFCEETRR ddPTM_BT-474_Trastuzumab_2h_R1 4 NLETFCEETRR 11 1 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ;;; 250.69 1.4427e-16 2254910000.0 1246490.0 1668260.0 1535650.0 1723050.0 1669450.0 1634470.0 1575620.0 1385300.0 1783420.0 1588590.0 False True 1239779.0363380578 1723787.0256155343 1751856.171890917 1941187.9533317043 1882044.5618946054 1521482.936028526 1499401.2411470856 1488678.1204108654 1343920.0376036537 1487204.8261396748 0.8336303208187819 1.1590784237097684 1.1779521832498323 1.3052593154706402 1.265491160877828 1.0230486811812107 1.0082008979483135 1.0009906465103497 0.9036549733986917 1.0 20.504171926402435 2.562069832277846 6.290735757838733 0.9856173981620046 1.1590163359632986 0.3091093729430783 0.1211178922893144 0.30085354029975725 18.251653739747656 0.04114726432584404 0.038552201466036294 364.81260216528545 -2.562069832277846 0.173398937801294 NLFEDQNTLTSICEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLFEDQNTLTSICEK 15 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 ; 242.07 1.5262e-17 88268000.0 135120.0 136303.0 126117.0 108221.0 117645.0 152031.0 151586.0 144620.0 191087.0 154042.0 False True 134392.52893324321 140839.76295809663 143873.17737138478 121921.76750385096 132626.39341345424 141521.4548124793 144253.2060652458 155412.27876547992 143996.1692846159 144210.90767800863 0.9319165318154178 0.9766235108412255 0.9976580807092766 0.8454406775947597 0.9196696390648891 0.9813505586447434 1.0002933092088402 1.0776735357111924 0.9985109420857943 1.0 17.137820764243195 2.3345410447333927 2.433917510923047 1.0331961238374066 0.9361964739310482 0.449739199394777 0.04361824676229067 0.25252608282395517 3.0685782892879354 0.018926323927879244 0.01430230227777101 216.0434205584047 -2.3345410447333927 -0.09699964990635834 NLFEEYR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLFEEYR 7 0 A5YKK6-3;A5YKK6-2;A5YKK6;A5YKK6-4 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 ;; 108.7 0.016738 404548000.0 472080.0 581276.0 505126.0 533430.0 441965.0 532531.0 519000.0 480240.0 626960.0 590327.0 False True 469538.3737330191 600623.4202712377 576243.3501661011 600962.1833061905 498246.62301821 495718.3854131352 493893.9872274652 516077.9474093076 472454.10883358266 552651.8254556286 0.8496097399948198 1.0868025628542155 1.0426878617310686 1.087415540174382 0.9015560974713787 0.8969813589314481 0.893680187919906 0.9338211214336115 0.8548856387908831 1.0 19.076011333043933 3.219940520742247 24.991270873696685 0.9097648654171316 1.023502681469612 0.33157452903632634 0.07135887986505232 242.68290543395113 325720.2096482873 0.019681467251476712 0.023564177090133028 1659.3596325300534 -3.219940520742247 0.11373781605248034 NLFGPVDHEELTR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLFGPVDHEELTR 13 0 P46527;E7ES52;H7C2T1 P46527 CDKN1B Cyclin-dependent kinase inhibitor 1B 0 ;; 183.06 1.067e-05 842670000.0 547700.0 627290.0 546960.0 605790.0 603690.0 586250.0 536430.0 554990.0 673460.0 582160.0 False True 544751.2440551909 648168.9684451878 623967.2137384543 682482.9518869512 680566.3431490337 545723.9173840593 510480.83153839945 596406.1719821168 507494.8069016588 545006.0503877482 0.9995324706351866 1.1892876565022419 1.144881260115422 1.2522483950433105 1.2487317208035402 1.001317172526434 0.9366516778579146 1.0943111027075747 0.931172794394848 1.0 19.055912720502427 2.7212481289214994 24.37146307469865 1.001728507054401 1.1716923200199718 0.5532167149936569 0.0780253764121447 466.7571505016947 657071.0534766329 0.025468422371438922 0.024069854886669847 526.317885889881 -2.7212481289214994 0.16996381296557073 NLFQQYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLFQQYDR 8 0 Q9UBV8 Q9UBV8 PEF1 Peflin 0 ; 99.442 0.01905 122310000.0 320068.0 336880.0 340660.0 312841.0 267144.0 320928.0 348160.0 337065.0 481260.0 336888.0 False True 318344.7894508981 348092.8471517398 388621.9669301995 352446.6385236898 301163.2049134581 298743.0027432516 331318.1706996418 362218.5018813892 362659.9215536078 315387.5194156722 1.0093766235287462 1.1036988648018213 1.2322046466842151 1.1175034420406937 0.9548989302792705 0.9472251891791458 1.0505113560406092 1.1484871137338666 1.1498867241973256 1.0 18.266766045049145 -1.1558654321122181 3.449583057559117 0.9999014383100083 1.0817748483439416 0.07051911569518532 0.08596283604706066 11272833.923779573 21634537.244197458 13027.443468057867 0.022666092485172925 0.06984487877111013 1.1558654321122181 0.08187341003393322 NLGFSPEDREENVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLGFSPEDREENVR 14 1 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ; 183.0 1.3301e-06 1181820000.0 330770.0 345540.0 316470.0 351380.0 349020.0 345670.0 362440.0 279040.0 388020.0 375080.0 False True 328989.1710720016 357041.0900166589 361026.22519344854 395864.67197219736 393465.62819638575 321774.6465196546 344907.3925447444 299863.3817364098 292397.67020161817 351142.0732778562 0.9369118545121616 1.0167995156027196 1.0281485833449844 1.1273632586288014 1.1205311414933727 0.9163659698080002 0.9822445636465262 0.8539659714862196 0.8327047439007571 1.0 18.42169534240925 2.6658561686885274 8.286044052309125 0.9086702136156309 1.0477567455213228 0.4626130675550705 0.06915979238990559 0.31132117716004243 32.87798922849343 0.023637114621807023 0.022280298748704915 463.2934590219486 -2.6658561686885274 0.13908653190569187 NLGLEELGIELDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLGLEELGIELDPR 14 0 E9PEX6;P09622-2;P09622;P09622-3 E9PEX6 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial 0 ; 146.79 1.9102e-05 102213000.0 165721.0 176011.0 176181.0 157191.0 197783.0 300020.0 160509.0 142927.0 222770.0 186566.0 False True 164828.77654933397 181869.41973410343 200985.75340729568 177091.36448284378 222969.4926983145 279280.32357111364 152744.56646607566 153592.93850860005 167871.31846506486 174659.19815281147 0.9437165536802892 1.0412816596981262 1.1507309980402565 1.0139252118168112 1.2765974827345525 1.5990015213900608 0.8745291864470691 0.8793864859852368 0.9611364316363813 1.0 17.414183096442507 NLGS(ph)INTELQDVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLGSINTELQDVQR 14 0 O75396;A0A087X1A9 O75396 SEC22B Vesicle-trafficking protein SEC22b 1 NLGS(0.946)INT(0.054)ELQDVQR 172.96 2.9112e-06 146760000.0 124580.0 129280.0 142770.0 127440.0 144140.0 163020.0 133770.0 124190.0 156220.0 170290.0 True False 123909.27512213927 133583.0066485897 162870.775020914 143573.89093328227 162495.3746152856 151750.81110780252 127299.03404897497 133457.6884240421 117721.67424075262 159421.94640739588 0.7772410130126908 0.8379210620551836 1.021633336508794 0.9005905031819484 1.0192785766147636 0.9518815603970228 0.7985038253369947 0.837134983178519 0.7384282835182553 1.0 17.282490722295208 2.2393661204451853 24.999236910164672 0.8295921848180035 0.9229573502846565 0.12477071964120034 0.09337510824222173 37.01769376391785 1148908.5259927101 0.03340646670739859 0.026435056694086443 173.52662515033117 -2.2393661204451853 0.09336516546665308 NLGSGS(ph)PKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLGSGSPKPR 10 1 A0A1C7CYX9 A0A1C7CYX9 1 NLGS(0.016)GS(0.984)PKPR 84.365 0.0090666 204490000.0 294040.0 205850.0 182910.0 170020.0 184540.0 313780.0 262700.0 242630.0 436580.0 266230.0 True False 292456.92131091515 212701.59281104722 208662.13811777928 191544.51456745647 208040.07514572496 292089.1271586694 249992.19738854555 260736.28265017548 328990.70887228136 249238.97346902944 1.1733996382682743 0.8534042242694344 0.837197069196354 0.7685175071195592 0.8347012196773316 1.1719239695671615 1.0030220952567424 1.0461296603060142 1.3199809977277166 1.0 17.927170154492845 2.7432159840010577 24.917319123640816 1.096834860347064 0.881154316216679 0.38871090680134857 0.13384170026575237 407.5506970695017 2181370.2961064433 0.04163416969827145 0.042872378958299526 553.6253705858844 -2.7432159840010577 -0.21568054413038495 NLGSINT(ph)ELQDVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLGSINTELQDVQR 14 0 O75396;A0A087X1A9 O75396 SEC22B Vesicle-trafficking protein SEC22b 1 NLGS(0.028)INT(0.972)ELQDVQR 163.56 4.7628e-05 139530000.0 116740.0 126710.0 154300.0 124010.0 119800.0 158690.0 141720.0 128620.0 163240.0 143130.0 True False 116111.48481103325 130927.46575218743 176024.09880035755 139709.65328496826 135055.81988976832 147720.13381607897 134864.46217702577 138218.27751912616 123011.6893039333 133995.32086024195 0.8665338764488526 0.9771047594172761 1.3136585491962955 1.0426457609716566 1.007914448226386 1.1024275539453507 1.0064863557264834 1.0315157024273167 0.9180297380102947 1.0 17.031823096839346 1.5276427761265134 2.1927924069559803 0.9621646931332444 1.0550126152453256 0.07813830640784136 0.10936865317724745 0.7357202876443034 7.26464514078102 0.08965402320941629 0.030750755702814127 33.7009990975001 -1.5276427761265134 0.09284792211208126 NLHSEISGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLHSEISGK 9 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 119.53 0.00081249 1229220000.0 1699650.0 1491340.0 1372760.0 1327070.0 1245610.0 1962930.0 1738210.0 1287730.0 2159700.0 1716350.0 False True 1690499.2732488655 1540978.350365932 1566032.6757561811 1495076.925932449 1404231.0501911056 1827237.2693402003 1654126.141692972 1383826.9515604458 1627470.8734973317 1606811.0735588379 1.0520834098464802 0.9590289584903741 0.9746215354912019 0.9304621747602754 0.8739241801968362 1.1371823977371232 1.0294465658799192 0.8612256750854245 1.0128576409999064 1.0 20.615768878385147 -2.6050053184042974 1.6300184526543962 1.251628787549295 0.9740263937748784 0.0 0.07884135856891504 7433576.193136022 355637.0178543961 6896140.061982314 0.02014250214596108 0.0024831026968389442 2.6050053184042974 -0.27760239377441664 NLIHGSDSVESAR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLIHGSDSVESAR 13 0 Q13232;H3BPR2 Q13232 NME3 Nucleoside diphosphate kinase 3;Nucleoside diphosphate kinase 0 140.82 3.9547e-05 132210000.0 92731.0 157900.0 182620.0 199440.0 202300.0 250480.0 193430.0 163780.0 184180.0 212270.0 False True 92231.74659938255 163155.60604743427 208331.30863850485 224689.08355095604 228061.70587395778 233164.90716649772 184073.05192564268 176002.0952579886 138791.30688555748 198722.74686651 0.4641227441433179 0.8210212903157604 1.048351594991032 1.1306661521838195 1.1476376482816832 1.1733176540837769 0.9262807344812515 0.8856665783520808 0.6984168097212804 1.0 17.600397495052807 4.644924032391797 2.573945112744119 1.0021216518032503 0.40689753892139074 0.5943054819247153 0.1351561758160444 0.29783073935239424 2.891094685384919 0.037582388446879195 0.34808137734336747 44149.32137746569 -4.644924032391797 -0.5952241128818596 NLKPIKPMQFLGDEETVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLKPIKPMQFLGDEETVR 18 2 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ; 210.06 2.5551e-16 6453100000.0 5966300.0 4153900.0 3167400.0 3739700.0 3417500.0 5665600.0 4004800.0 3541600.0 7111700.0 5902000.0 False True 5934178.1037182445 4292160.050414427 3613342.3884656634 4213145.636559923 3852698.36789051 5273950.40738785 3811072.5241783285 3805892.1758804074 5359116.826897704 5525329.30704358 1.073995371851135 0.7768152470012722 0.6539596443345822 0.7625148479727876 0.6972794115599891 0.9545042683093516 0.6897457712285219 0.688808207508778 0.9699180861611285 1.0 22.397629020340617 1.1651138648080877 7.385671654887834 0.9917861238169339 0.7753812615605148 0.28110174857517933 0.12547486136112004 0.30206911633890515 25.130811727411096 0.11791964498791739 0.02967809265652538 14.625605833134554 -1.1651138648080877 -0.21640486225641908 NLLDDVEEFHER ddPTM_BT-474_Trastuzumab_2h_R1 2 NLLDDVEEFHER 12 0 P29375;P29375-2;E7EV89 P29375 KDM5A Lysine-specific demethylase 5A 0 ; 180.84 1.8923e-05 65927000.0 83090.0 102266.0 101602.0 104715.0 100874.0 106411.0 102825.0 94310.0 129206.0 105891.0 False True 82642.65267216685 105669.86198889744 115906.67845958454 117971.90826332913 113719.70597295919 99055.05803455034 97850.96192035463 101347.89109647633 97364.91257169814 99132.94572215388 0.8336547660330259 1.065940906114754 1.1692044215496578 1.190037352405288 1.1471434157892224 0.9992143107719018 0.9870680348247459 1.0223431812520776 0.9821650296218261 1.0 16.59707698015959 2.7124140054411394 23.08633407178469 1.000490612326945 1.0912847322904455 0.16112969435462665 0.09324948240210562 533.9203322727717 471427.0532592734 0.03183724978292078 0.030030927405340732 515.7200373455563 -2.7124140054411394 0.09079411996350051 NLLDEELQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLLDEELQR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 208.72 2.2317e-05 392710000.0 519420.0 600870.0 572920.0 647870.0 569760.0 651780.0 661080.0 562280.0 713790.0 673300.0 False True 516623.50043298746 620869.5947164143 653582.1560900883 729890.2755723926 642315.5587679005 606723.9827250866 629101.0348291568 604240.1887999865 537886.0187959726 630329.4175588685 0.8196087411464312 0.9849922555112689 1.0368898196458491 1.1579505179991474 1.0190156779536828 0.9625506375298162 0.9980512051389431 0.9586101679024913 0.8533411321322912 1.0 19.265746469512138 1.5802308794007927 3.70788322127769 0.9212876079262745 1.0037194089473227 0.09486776355180704 0.08493341351824013 0.3870819259723292 12.220733875743568 0.05470047756913959 0.023088152179122794 38.0391566138563 -1.5802308794007927 0.08243180102104819 NLLEDDS(ph)DEEEDFFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 NLLEDDSDEEEDFFLR 16 0 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR 265.38 4.5606000000000004e-27 1126152000.0 976000.0 1201030.0 996290.0 978370.0 1132360.0 1312460.0 1047830.0 1052580.0 1188690.0 1088250.0 True False 970745.3244437943 1241005.5575120328 1136558.9720920802 1102231.5416854634 1276559.3339764457 1221732.729398521 997142.4598006841 1131128.8644929386 895753.2771299456 1018796.9533023004 0.9528349307457655 1.218108822851768 1.1155892922609056 1.081895207983024 1.2530066269227067 1.1991915812453404 0.9787450350814006 1.1102593709438653 0.8792264977103392 1.0 19.95843511969651 1.6376260106278355 1.4684970766877234 0.9578083352017996 1.135515430203394 0.31135021969244214 0.09766832073885844 0.4431724761408951 1.8634867942074254 0.0779515913372884 0.028276760389315325 43.4136210077404 -1.6376260106278355 0.17770709500159443 NLLHADSNGYTNLPDVVQPS(ph)HSPTENSK ddPTM_BT-474_Trastuzumab_2h_R1 1 NLLHADSNGYTNLPDVVQPSHSPTENSK 28 0 Q8N4C8;Q8N4C8-4;Q8N4C8-2;Q8N4C8-3;Q8N4C8-5 Q8N4C8 MINK1 Misshapen-like kinase 1 1 NLLHADSNGYTNLPDVVQPS(0.685)HS(0.313)PT(0.001)ENSK 210.04 2.2368000000000005e-25 223530000.0 114370.0 95854.0 94635.0 102280.0 105300.0 150170.0 111860.0 102670.0 156710.0 131330.0 True False 113754.2446277017 99044.44244503345 107958.78541783415 115228.63751299547 118709.33083800184 139789.1013621563 106448.90445330286 110331.75674769636 118090.92030641607 122948.40696273031 0.9252193455599985 0.8055772733603378 0.8780820189932188 0.9372113096831344 0.9655215042679368 1.13697366900029 0.8658014128281549 0.8973825645511742 0.9604916665753408 1.0 16.907693516553742 3.6980385906314943 3.105899274645393 0.960911922044751 0.8608524138312654 0.2728087187897247 0.07278161810829342 0.374035852909234 7.267152958830606 0.0212363214290662 0.037333899922686396 4989.2881941356545 -3.6980385906314943 -0.10005950821348553 NLLHVTDTGVGMTR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLLHVTDTGVGMTR 14 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 ;; 144.33 8.8816e-06 3074760000.0 1202467.0 1430357.0 1319655.0 1128335.0 1139095.0 1396365.0 1208904.0 1072803.0 1751633.0 1446935.0 False True 1195993.0512786438 1477965.5680759337 1505450.9533531158 1271182.0953092054 1284151.9963049737 1299837.5742396463 1150424.6950582499 1152861.0074432539 1319966.5178296778 1354590.3695166218 0.8829186137691407 1.0910793412796356 1.111369892501397 0.9384254634578716 0.9480002406655352 0.9595798135664336 0.8492786608757397 0.8510772211193602 0.9744396147602176 1.0 20.36942521336574 3.569365289739028 6.535000250479611 0.9162693044347682 1.0345198130587232 0.25411949864804395 0.07357407958388588 0.2793190432449744 16.632679627654653 0.020090327770275574 0.03118712054483661 3709.9263646580953 -3.569365289739028 0.11825050862395503 NLLSVAYK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLLSVAYK 8 0 P27348;E9PG15;P31946-2;P31946;Q4VY19;A0A0J9YWE8;Q4VY20;A0A0J9YWZ2;P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1;P31947-2;P31947;P61981;P62258;P62258-2;B4DJF2;I3L3T1;K7EIT4;Q04917;A2IDB2 P27348;P31946-2;P63104;P31947-2;P61981;P62258;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta 0 ; 133.23 0.0021592 1497290000.0 2914000.0 2484700.0 2348000.0 2071500.0 1533030.0 2352500.0 2127100.0 1802330.0 4264300.0 2492600.0 False True 2898311.3477758393 2567401.7374671325 2678577.99081814 2333751.687604321 1728252.283519295 2189877.2121893386 2024204.0466889038 1936829.016646299 3213420.403692493 2333520.1339777745 1.2420340007246082 1.1002269490131538 1.1478701005472671 1.0000992293244764 0.7406202579333544 0.9384436758453938 0.8674465744756172 0.8300031306542591 1.377069928346759 1.0 21.15407648447906 3.661913217875238 3.785010265334157 0.93138426388014 1.1592423137997747 0.22825633082863772 0.16299827737216 0.30366116520472913 8.351507858919307 0.04362930146456517 0.07176849172969549 4591.062635753185 -3.661913217875238 0.22785804991963476 NLNHVSYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLNHVSYGR 9 0 P00367;P00367-2;P00367-3;P49448 P00367 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial 0 74.16199999999998 0.041871 149560000.0 49646.0 87789.0 96219.0 87130.0 121930.0 123630.0 87511.0 101410.0 102580.0 124810.0 False True 49378.71145218913 90711.00379542877 109765.79884945926 98160.64906635994 137457.0627642694 115083.7490937164 83277.75860551572 108977.7291495459 77300.53350157726 116844.51894478305 0.4226018635544549 0.7763394005524201 0.9394176110334369 0.8400963087772008 1.1764100191060496 0.984930659418447 0.7127228504819306 0.9326730096860193 0.6615674761612652 1.0 16.834230534816484 4.7102726379580995 2.4468996443912983 0.9048947518545317 0.3301556340873606 0.5244404891685372 0.13866813121509322 0.39144158367362525 3.0397003785569403 0.034652417221575874 0.4598487429547289 51318.34451383537 -4.7102726379580995 -0.5747391177671711 NLNNSNLFS(ph)PVNR ddPTM_BT-474_Trastuzumab_2h_R1 6 NLNNSNLFSPVNR 13 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR 303.77 3.850099999999999e-41 4815520000.0 2779950.0 2492690.0 2098720.0 2285250.0 2065830.0 2406860.0 1838430.0 1962620.0 2902820.0 2258200.0 True False 2764983.0580814797 2575657.679787073 2394201.5335987434 2574562.415688038 2328901.205366277 2240479.4333390133 1749498.117415391 2109080.6703824275 2187458.9067951683 2114079.7426577127 1.3078896705218341 1.2183351591785692 1.132502944562004 1.2178170783905389 1.1016146450741267 1.0597894621148005 0.8275459445139054 0.9976353435613547 1.0347097428052583 1.0 21.011598365234494 2.8810331862350944 1.710838489477804 0.9642197513532267 1.2169713310653698 0.7283254043558627 0.06829965790917907 0.188441305308865 1.1057337519422739 0.025593831725678303 0.027758442797520173 760.3843788311929 -2.8810331862350944 0.2527515797121431 NLNNYEVEY(ph)LCDY(ph)KVVKDMEY(ph)YLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NLNNYEVEYLCDYKVVKDMEYYLVK 25 2 Q9H5I1-3;Q9H5I1 Q9H5I1-3 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 3 NLNNY(0.001)EVEY(0.75)LCDY(0.75)KVVKDMEY(0.75)Y(0.75)LVK 50.851000000000006 0.040892000000000005 1353400000.0 2440000.0 733380.0 390580.0 269210.0 278560.0 531810.0 404020.0 306620.0 1460200.0 402880.0 True False 2426863.3111094846 757790.1099624273 445570.2690177809 303291.9583972766 314032.9648455251 495047.22644608404 384476.00909371924 329501.5413848119 1100353.2756775487 377167.853477079 6.4344383773336835 2.0091587948878025 1.1813580211306602 0.8041299267720016 0.8326079806390745 1.3125382290200103 1.0193764011149598 0.8736204274758961 2.917410021913277 1.0 18.524847192852903 4.751558132864537 2.8268752869425837 1.1874472849100397 7.481345298118376 0.8739970118682899 0.5876969299777807 0.1352469599885169 1.465880098391287 0.13975086425687555 1.9918653388562544 56436.24795185427 -4.751558132864537 6.293898013208336 NLPIMS(ph)TASVEIDDALYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLPIMSTASVEIDDALYSR 19 0 A0AVT1;A0AVT1-4;A0AVT1-3 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 1 NLPIMS(0.369)T(0.369)AS(0.261)VEIDDALYSR 68.03399999999999 0.017884999999999998 0.0 29829.0 34829.0 33614.0 38355.0 30210.0 35726.0 36560.0 32274.0 40788.0 38603.0 True False 29668.403978313454 35988.26221042489 38346.559021874345 43210.739067373244 34057.064431301376 33256.345709958034 34791.45312723722 34682.44976405132 30736.34393119842 36139.323490308954 0.8209451952322592 0.9958200302248443 1.0610757291059218 1.195670944946176 0.9423824560643491 0.920226016927959 0.9627034976613998 0.9596872994413328 0.8504958301015406 1.0 15.141281879489886 3.0568905769342467 24.999993763694672 0.939257723377709 1.0259677997275585 0.14706748122733304 0.09266739309619523 155.16040251502244 68182.30518912508 0.027593664257369786 0.0329807332300782 1139.9625310663828 -3.0568905769342467 0.08671007634984951 NLPIMSTAS(ph)VEIDDALYSR ddPTM_BT-474_Trastuzumab_2h_R1 10 NLPIMSTASVEIDDALYSR 19 0 A0AVT1;A0AVT1-4;A0AVT1-3 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 1 NLPIMS(0.001)T(0.038)AS(0.961)VEIDDALYSR;NLPIMSTAS(1)VEIDDALYSR;NLPIMSTAS(1)VEIDDALYSR;NLPIMS(0.034)T(0.265)AS(0.701)VEIDDALYSR;NLPIMS(0.023)T(0.178)AS(0.8)VEIDDALYSR;NLPIMST(0.007)AS(0.993)VEIDDALYSR;NLPIMSTAS(1)VEIDDALYSR;NLPIMSTAS(1)VEIDDALYSR;NLPIMS(0.139)T(0.139)AS(0.722)VEIDDALYSR;NLPIMS(0.174)T(0.174)AS(0.652)VEIDDALYSR 266.62 1.6261e-31 1260838000.0 269953.2 241493.5 222843.0 249746.3 226457.6 264012.3 229025.3 232689.3 341501.0 283469.5 True False 268499.8019658202 249531.4651615964 254217.35741392136 281364.1559729351 255295.63304064452 245761.7511191049 217946.47127739192 250053.7571383238 257342.6544289542 265378.23381955136 1.0117627135479068 0.9402861024814482 0.9579435123785659 1.0602382566320554 0.9620066776623335 0.9260810413193683 0.821267321515104 0.9422542065313174 0.9697202770741888 1.0 18.01769052092358 2.8576263362362284 4.1050162265686465 0.9204734770379921 0.9885579511972322 0.20581852309252036 0.05311507352345892 0.32897072642405295 9.438209086941828 0.016827441483627047 0.017969187089429448 720.487310467719 -2.8576263362362284 0.06808447415924013 NLQEEIDALESR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLQEEIDALESR 12 0 Q9NQP4;E9PQY2 Q9NQP4 PFDN4 Prefoldin subunit 4 0 ;; 284.1 6.6947e-28 507601000.0 538541.0 560976.0 581013.0 581029.0 574245.0 608783.0 638381.0 624068.0 754286.0 626792.0 False True 535641.5550935295 579647.7470428465 662814.5801444727 654587.2118257541 647371.6969332228 566699.2641310354 607500.0721777577 670639.123113094 568402.3222145714 586789.5979363706 0.9128341009746607 0.9878289408697075 1.1295608894149924 1.115539904128865 1.1032433076692363 0.965762287068501 1.0352945490414656 1.1428953844301373 0.9686646188234014 1.0 19.162483770910576 4.464246406717715 5.186936870500489 1.0659576564273887 0.9278138221096401 0.3434256472686038 0.062388561967659587 0.15920268588064507 12.713542833821322 0.015372269607616873 0.05017660948824139 29123.69047310792 -4.464246406717715 -0.13814383431774857 NLQS(ph)PTQFQTPR ddPTM_BT-474_Trastuzumab_2h_R1 6 NLQSPTQFQTPR 12 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 NLQS(0.986)PT(0.014)QFQTPR;NLQS(0.998)PT(0.002)QFQTPR;NLQS(0.909)PT(0.091)QFQTPR;NLQS(0.995)PT(0.005)QFQTPR;NLQS(0.997)PT(0.003)QFQTPR;NLQS(0.998)PT(0.002)QFQTPR 230.23 6.6126e-12 3392710000.0 2190060.0 2183580.0 2035180.0 2188260.0 2226880.0 2552180.0 2288840.0 2104020.0 2757310.0 2343510.0 True False 2178268.9602985415 2256259.1402980173 2321715.6538983234 2465293.491632646 2510459.9682481457 2375753.8037854964 2178120.0649821004 2261032.6563970754 2077807.8965610643 2193945.1854201485 0.9928547781294704 1.02840269451214 1.0582377669812686 1.123680531316708 1.1442674069212824 1.0828683503915941 0.9927869116588628 1.0305784626811811 0.9470646351463683 1.0 21.06509605053 2.2376486686162513 24.997475405996386 0.9988663923169406 1.0747965047394796 0.42358556036436945 0.04488803616558311 27.492611147562876 753571.6438175126 0.01801416298980245 0.014086357303121829 172.84175548430457 -2.2376486686162513 0.075930112422539 NLQYYDISAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NLQYYDISAK 10 0 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 111.27 0.0041324 307680000.0 429880.0 395030.0 468300.0 433940.0 363340.0 521030.0 449430.0 452990.0 753490.0 555450.0 False True 427565.5738441584 408178.3347493222 534232.5694634307 488876.7595071294 409609.1953150956 485012.4224726933 427689.3539106738 486794.4140366122 567802.4857487174 520000.7054553302 0.822240372673663 0.7849572711481371 1.0273689321164259 0.9401463389920834 0.7877089223493032 0.9327149316999485 0.8224784109401824 0.9361418339045493 1.0919263758527604 1.0 18.988154054914034 1.423809979850698 4.6335998565726335 1.0428827101542988 0.8780877304932421 0.4492014608086655 0.07525669518334908 0.18921574975124394 7.096916915733657 0.05255716792647477 0.01924742325472446 26.53444326387445 -1.423809979850698 -0.16479497966105672 NLRPGDSQTAAQAR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLRPGDSQTAAQAR 14 1 Q8WZA9;M0QZP8 Q8WZA9 IRGQ Immunity-related GTPase family Q protein 0 ;; 259.68 1.8094e-24 773880000.0 537642.0 531560.0 462786.0 491810.0 492619.0 599869.0 517328.0 474793.0 667360.0 534132.0 False True 534747.3952096414 549252.6532651949 527942.2461919774 554073.0955735852 555351.1096684288 558401.4679697369 492302.8682551252 510224.46461000264 502898.0701658471 500043.2384665882 1.0694023117870277 1.0984103193746009 1.0557931906267608 1.1080503703493376 1.1106061775206588 1.1167063665976318 0.9845205981882701 1.0203606915566656 1.0057091696870322 1.0 18.931693323772706 2.237490753544736 24.999985841234906 1.005352378607784 1.0931711977487732 0.8393855878988264 0.0193824468554053 11.218438223338815 262137.02830068077 0.007216863086206365 0.005635101099627009 172.7789194188382 -2.237490753544736 0.08781881914098921 NLS(ph)EEGLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLSEEGLLR 9 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 NLS(1)EEGLLR 62.694 0.084905 156700000.0 122200.0 160000.0 109000.0 146870.0 118980.0 131000.0 143350.0 127890.0 155580.0 148170.0 True False 121542.0887776963 165325.50327795767 124346.25255501593 165463.72694107983 134131.3977502892 121944.27834083041 136415.61284982096 137433.80121226126 117239.3936651919 138713.66374528097 0.8762084822507701 1.1918472832030726 0.8964239657266365 1.192843750741959 0.9669660084574931 0.8791079050781611 0.9834331324441123 0.9907733492255679 0.8451899438001859 1.0 17.081750379233487 3.021778276019075 24.993531292339448 0.944683451378372 1.045003224948495 0.16113706512617332 0.10717849937656754 398.8502091157726 457731.6133135675 0.028441625635775916 0.03399195264732387 1051.4249440348142 -3.021778276019075 0.10031977357012312 NLS(ph)FEIK ddPTM_BT-474_Trastuzumab_2h_R1 8 NLSFEIK 7 0 Q05209;Q05209-2;Q05209-3 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK 116.77 0.0056455 4350876000.0 4740210.0 3435687.0 2848098.0 3249655.0 2995919.0 3773840.0 3650499.0 3273063.0 5518270.0 3760690.0 True False 4714689.236046841 3550041.764878347 3249085.4422883983 3661060.9898053664 3377431.5264468696 3512963.32346381 3473910.417109585 3517315.581337144 4158366.299529621 3520679.5445113047 1.3391418265820252 1.0083399298333806 0.9228574771463315 1.0398733947578145 0.9593123951630994 0.997808314857987 0.9867158806104258 0.9990445131027602 1.1811260431277995 1.0 21.747422487072193 4.738287499731956 8.299335530927422 1.005240162288126 1.3413859372047283 0.7002068994890414 0.0644177976900718 0.045487967488306545 45.0206906881957 0.014737004176336945 0.08644251823938337 54737.82032988753 -4.738287499731956 0.33614577491660236 NLS(ph)GSTLYPVSNIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 NLS(0.999)GS(0.001)TLYPVSNIPR 176.49 8.350399999999998e-07 100140000.0 97576.0 95417.0 79509.0 85004.0 78097.0 99725.0 90399.0 86191.0 119940.0 99243.0 True False 97050.66165771268 98592.89716420547 90703.17609538311 95765.49768434354 88042.19003281514 92831.24547739925 86026.05501228443 92623.0100890297 90382.39411365926 92909.22677379294 1.0445750656606254 1.0611744450769203 0.9762558493379682 1.0307425969382438 0.9476151410362329 0.999160672205533 0.9259150893778608 0.9969193943949175 0.972803210747994 1.0 16.503534256671877 4.1462443174254355 1.073840832975201 0.9747130893998501 1.0647748948291142 0.4516715777399236 0.02963790866204426 0.6350043196872499 1.1018178068356073 0.008783746258760244 0.05245056337939403 14003.748982517627 -4.1462443174254355 0.09006180542926412 NLS(ph)LVR ddPTM_BT-474_Trastuzumab_2h_R1 4 NLSLVR 6 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 NLS(1)LVR;NLS(1)LVR;NLS(1)LVR;NLS(1)LVR 94.302 0.046822 2010360000.0 2041580.0 1746610.0 1627800.0 1547710.0 1579050.0 1584790.0 1691190.0 1614110.0 1608410.0 1920820.0 True False 2030588.3601208632 1804744.8580019604 1856980.0909087586 1743649.9273097184 1780132.657737387 1475237.1974943834 1609380.678726814 1734563.084484502 1212038.9070898024 1798231.6231032624 1.1292140200585594 1.0036220222217302 1.0326701338418864 0.9696470159392756 0.9899351311959238 0.8203821902255963 0.8949796333519356 0.9645938054915941 0.674017124111159 1.0 20.778147429987712 3.750020078394437 0.6589293356644451 0.8733543686614536 1.1176355779190028 0.44174130009196577 0.08918304434774703 1.1719208354576247 0.8484227942535412 0.04636597533575832 0.18312850567606556 5623.673240745434 -3.750020078394437 0.24428120925754926 NLS(ph)NEELTK ddPTM_BT-474_Trastuzumab_2h_R1 4 NLSNEELTK 9 0 Q0JRZ9;Q0JRZ9-3 Q0JRZ9 FCHO2 F-BAR domain only protein 2 1 NLS(1)NEELTK;NLS(1)NEELTK;NLS(1)NEELTK;NLS(0.998)NEELT(0.002)K 202.72 2.0329e-05 2155180000.0 3818310.0 3145930.0 2795590.0 2528650.0 2659230.0 4066190.0 3819380.0 3277880.0 5119580.0 3542210.0 True False 3797752.643214126 3250640.378295157 3189184.772296119 2848776.830731671 2997867.1780089214 3785103.856081689 3634621.997951515 3522492.050337381 3857928.1078573284 3316143.1251614457 1.145231825007322 0.9802473100846335 0.9617150562947594 0.8590632922675733 0.9040222526170281 1.1414175182494308 1.0960389406517441 1.0622255787484713 1.1633780455931033 1.0 21.661074844404098 2.735237260428147 24.987586944338283 1.09382236806862 0.9639924922384072 0.36629273756927294 0.08039457320173748 317.87479186491703 2390020.677106245 0.026272852703735278 0.02570716278895282 543.5471969273323 -2.735237260428147 -0.12982987583021288 NLS(ph)PGAVESDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLSPGAVESDVR 12 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IU78 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 1 NLS(1)PGAVESDVR;NLS(1)PGAVESDVR 170.78 4.2193e-05 1334810000.0 745340.0 697980.0 671170.0 681510.0 747260.0 756480.0 724990.0 669730.0 869400.0 687680.0 True False 741327.1722550585 721211.8423621798 765664.9020857803 767789.0961232062 842419.131642974 704186.3181623755 689919.4639692478 719708.653420032 655148.0193631437 643791.6736475314 1.1515016465729047 1.1202565548510572 1.189305381580584 1.1926048868776795 1.3085275348003162 1.0938108506011983 1.071650181588044 1.117921655218648 1.0176397834586313 1.0 19.29623439256167 1.7500393198873876 0.9441857054441569 1.0099523931593921 1.183004763754473 0.565731477327341 0.056732773501831944 0.43317222503987923 0.7233722779931173 0.05255354042981349 0.02194402211563245 56.23922404091154 -1.7500393198873876 0.17305237059508083 NLS(ph)PTAVINITSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLSPTAVINITSEK 14 0 H0YAJ5;G5E9Y1;Q92870-2;Q92870;Q92870-4;D6RB55 H0YAJ5 APBB2 Amyloid beta A4 precursor protein-binding family B member 2 1 NLS(0.997)PT(0.003)AVINITSEK;NLS(0.709)PT(0.291)AVINITSEK 137.73 2.0516e-05 102666000.0 242800.0 205540.0 185112.0 165889.0 184504.0 221961.0 210185.0 217890.0 261350.0 216830.0 True False 241492.79177761596 212381.27464844627 211174.1605776523 186890.5303910178 207999.49075911383 206617.35850999237 200017.5485653271 234150.05822300148 196943.79441057908 202991.72376249742 1.1896681662754154 1.0462558310846934 1.0403092139102599 0.9206805426692262 1.0246698087182882 1.0178609978785982 0.9853482933094841 1.1534955902781516 0.9702060298823094 1.0 17.631061382486646 4.775531128573047 2.594349626142302 1.0224028049764535 1.2337860982987563 0.4540394086592858 0.05698383855957095 0.5803344901387338 4.648994998049475 0.01500422447893619 0.2780143013401504 59639.10653404693 -4.775531128573047 0.21138329332230277 NLS(ph)SDEATNPISR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 NLS(0.919)S(0.081)DEATNPISR;NLS(0.5)S(0.5)DEATNPISR 225.7 1.2589e-11 973540000.0 642360.0 625400.0 616710.0 620130.0 620150.0 749810.0 735240.0 657930.0 952030.0 746190.0 True False 638901.6051329051 646216.0609377172 703537.4074605866 698638.3944166392 699122.426582971 697977.3995628856 699673.632310445 707028.0775008447 717414.963048417 698567.5153545996 0.9145881981193936 0.925058847904904 1.007114404830955 1.0001014634383674 1.0007943559014332 0.9991552487358156 1.0015834073751395 1.0121113020005668 1.0269801376095342 1.0 19.41404003081621 4.255967388344273 5.713621349825186 1.0060388439867247 0.9181095206335906 0.9462326517138875 0.008222524572983395 0.032229322028555996 3.2964417732508666 0.002132539115214955 0.005605745173940969 18028.82355335038 -4.255967388344273 -0.08792932335313408 NLS(ph)STTDDEAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLSSTTDDEAPR 12 0 O00515;E9PDI4;A0A0J9YYF6;A0A0J9YW63;A0A0J9YVY2 O00515 LAD1 Ladinin-1 1 NLS(0.999)S(0.001)TTDDEAPR;NLS(0.424)S(0.424)T(0.064)T(0.087)DDEAPR 170.89 4.1891e-05 1071620000.0 1765650.0 1426260.0 1294560.0 1302460.0 1331750.0 1732270.0 1526990.0 1525780.0 2542800.0 1588440.0 True False 1756143.9365821548 1473732.2019076226 1476822.795482766 1467351.3024557661 1501340.4685993262 1612522.2522249622 1453123.6600317266 1639641.4513538536 1916161.0117743288 1487064.3992680958 1.18094679520705 0.9910345527960759 0.993112871379094 0.9867436159308016 1.0096001688549983 1.0843661195968475 0.9771760125162876 1.102602854429743 1.2885528109726962 1.0 20.504035695862406 1.525733248933992 5.808970029752031 1.1601368431444339 1.0287900339007787 0.2144236751385269 0.08722552618490412 0.16360788053222755 11.792435916513751 0.04609199450676912 0.020713477456552956 33.55314618009542 -1.525733248933992 -0.13134680924365516 NLSDIGWPVFEIPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLSDIGWPVFEIPSPR 16 0 F5H4R1;J3KNB8;F5H538;Q9Y6R4-2;Q9Y6R4;F5H1X6 F5H4R1 MAP3K4 Mitogen-activated protein kinase kinase kinase 4 1 NLSDIGWPVFEIPS(1)PR;NLSDIGWPVFEIPS(1)PR 120.24 0.00013826 176703000.0 89907.4 78926.7 71009.7 70553.4 72193.6 78281.1 58967.0 61282.9 90069.8 92078.7 True False 89423.3485480511 81553.72749730236 81007.248532623 79485.45320599682 81387.02703500823 72869.71181088832 56114.540934184835 65856.14118626078 67873.3046634857 86202.15853345885 1.0373678579445544 0.9460752362210022 0.9397357318051441 0.9220819357457856 0.9441414045730461 0.8453351174797367 0.6509644525015498 0.7639732265022008 0.7873736089467074 1.0 16.395436374925623 2.609983905957672 3.51723595487502 0.77226016917735 0.9546936826631158 0.4080049288906987 0.08723501386054933 0.2010915317846271 4.553518908480132 0.02823558322585157 0.026282943278169563 407.36518142544327 -2.609983905957672 0.18243351348576586 NLSNEEMIQAADELEEMKR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLSNEEMIQAADELEEMKR 19 1 Q15170-2;Q15170 Q15170-2 TCEAL1 Transcription elongation factor A protein-like 1 0 152.0 7.919800000000001e-10 0.0 32451.0 31833.0 34668.0 32944.0 25192.0 37787.0 36020.0 38159.0 53351.0 38397.0 False True 32276.28742164504 32892.54216154513 39548.95306034209 37114.70702217558 28400.05187531758 35174.87363103019 34277.574990237554 41006.61834747582 40203.360916773716 35946.47058667443 0.8978986502672128 0.9150423289049853 1.1002179745291356 1.0324993362751507 0.7900650999056815 0.978534834072687 0.9535727550104586 1.140768973371122 1.118423040165655 1.0 15.13356250578935 1.7583238871163192 13.669870102070956 1.0968088765782396 0.9546046814582004 0.3427162531090173 0.08454118247231188 0.35184094322267967 242.46068483957737 0.04050401717564593 0.02233391813663433 57.32233687910543 -1.7583238871163192 -0.14220419512003912 NLSTVMDEIHTVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLSTVMDEIHTVLK 14 0 Q8IX12-2;Q8IX12 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ; 117.08 0.00032416 300430000.0 221040.0 207950.0 201710.0 190042.0 171834.0 235500.0 210219.0 206066.0 291500.0 237890.0 False True 219849.94519985246 214871.4900415707 230109.01470525027 214101.29771455456 193716.0413600876 219220.43930737057 200049.90385543427 221443.69130194574 219663.7308998805 222707.6565321246 0.9871683292044343 0.9648141127585187 1.033233514681872 0.9613558018094964 0.8698220994128458 0.9843417272712804 0.8982623542023485 0.9943245542166776 0.9863321913595502 1.0 17.76479163225289 1.5984079036694936 24.999999999999343 0.9927540528003316 0.957255221625819 0.1303898978242355 0.04323904454230548 1.7036752204290988 4490.6294881284575 0.023399668341507984 0.011056078031452723 39.66504064709736 -1.5984079036694936 -0.03549883117451258 NLSTVMDEIHTVLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 NLSTVMDEIHTVLKK 15 1 Q8IX12-2;Q8IX12 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 234.67 7.5662e-18 74864000.0 96475.0 99066.0 75263.0 80297.0 83999.0 97184.0 87200.0 102110.0 155870.0 109140.0 False True 95955.58931938023 102363.3519233385 85859.37620227678 90462.59196696317 94695.7747489203 90465.89882652859 82981.8028636512 109729.96670407377 117457.92705099277 102174.59176054502 0.9391335719183537 1.0018474276191467 0.8403202275913726 0.8853726783559857 0.9268035537724293 0.8854050431495066 0.8121569309337318 1.073945731647604 1.1495805858100765 1.0 16.640676953506528 1.6360257861642333 6.609455932520556 1.087226554180831 0.9009434041168063 0.6415976239266635 0.05998561712218072 0.07582400873191915 6.876303543580547 0.031210082513809106 0.01543270352030181 43.25395122357873 -1.6360257861642333 -0.18628315006402474 NLTANDPSQEYVAS(ph)EGEEDPEVEFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NLTANDPSQEYVASEGEEDPEVEFLK 26 0 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK 233.72 4.6146999999999985e-45 601980000.0 258108.0 212780.0 175863.0 185786.0 187117.0 259200.0 215139.0 202708.0 321260.0 262990.0 True False 256718.3752064949 219862.25367177368 200622.98177140142 209306.48855093223 210945.24082064925 241282.11409116923 204731.90465920907 217835.10029036726 242089.77766344993 246205.753042933 1.0426985236276292 0.8930020966383934 0.8148590327067502 0.8501283416981473 0.856784369225787 0.9800019337854173 0.8315480127042694 0.8847685222545612 0.9832823752954085 1.0 17.90950494783326 1.2124555205283984 6.093874807003524 0.9946824563270296 0.8883434196269185 0.256121447491518 0.06590564044910426 0.2289023403337856 25.800313984622598 0.0581282423905442 0.015863316802102363 16.310058566935588 -1.2124555205283984 -0.10633903670011102 NLTEQNSYSNIPHEGKHTPLY(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 1 NLTEQNSYSNIPHEGKHTPLYER 23 1 Q9NZB2;Q9NZB2-4;Q9NZB2-6;Q9NZB2-2;Q9NZB2-5;A0A0C4DH52;Q5T035 Q9NZB2 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 1 NLTEQNS(0.001)Y(0.023)S(0.115)NIPHEGKHT(0.401)PLY(0.46)ER 70.315 0.0087031 116150000.0 116610.0 85127.0 89956.0 77491.0 79005.0 112750.0 105640.0 77838.0 151930.0 102020.0 True False 115982.18471658906 87960.40073464176 102621.02288843131 87301.35265466888 89065.81845067731 104955.85788495118 100529.78961601041 83646.66681335519 114488.88725769777 95508.99625628373 1.2143587438126633 0.9209645602243953 1.0744644683843556 0.9140641832357771 0.9325385245561879 1.098910699504351 1.0525688003908464 0.8757988262058811 1.1987235940631646 1.0 16.54334901053083 4.752273475842256 24.404312023624904 0.9997773281736826 1.2143589438081162 0.2937632654404274 0.09551027580701983 2007.5620883254276 3572703.8259740626 0.021618636206865452 0.4255199338020044 56529.282844394475 -4.752273475842256 0.21458161563443356 NLVDFTFVENVVHGHILAAEQLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NLVDFTFVENVVHGHILAAEQLSR 24 0 Q15738 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating 0 180.83 1.993e-17 79471000.0 40903.0 35103.0 35189.0 37663.0 28317.0 48232.0 32071.0 24260.0 65848.0 42414.0 False True 40682.78279275053 36271.38213478839 40143.305331728916 42431.131938325634 31923.00210199143 44897.835365915445 30519.603206882522 26070.404389783886 49620.64271799435 39707.102207547694 1.0245719413142511 0.9134734120157924 1.010985518960845 1.068603085577475 0.8039620200721516 1.1307255596551962 0.7686182448509483 0.6565677911602502 1.2496666832706378 1.0 15.27710945752726 2.2221610796352675 24.999809389615915 0.8607348036337527 0.9842722504714717 0.0 0.17007489238151444 570.3115084812105 869389.6060061764 0.06289025329419651 0.046579309391472916 166.78657085130519 -2.2221610796352675 0.12353744683771906 NLVLTGFSHIDLIDLDTIDVSNLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 NLVLTGFSHIDLIDLDTIDVSNLNR 25 0 Q9UBT2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 ;;; 250.06 1.9602999999999997e-39 385272000.0 572256.0 524560.0 379788.0 509469.0 436622.0 504991.0 379276.0 330168.0 530260.0 509936.0 False True 569175.0372796191 542019.6624967835 433258.8492235267 573967.7231629663 492223.22363865154 470082.16079094826 360928.97090497904 354806.81271913304 399584.52811996854 477391.44790182565 1.1922606485331688 1.1353778222861013 0.907554693591045 1.202299969313655 1.0310683733485648 0.9846891117488545 0.7560440650776031 0.7432198760127311 0.8370165194122666 1.0 18.864813196323325 2.4725549880676714 2.6679767775371017 0.8036337290248465 1.0917639747956933 0.5689220949152605 0.10454589031021068 0.1793633625206669 2.595682478618209 0.03848123063487109 0.03259300990031655 296.862259094218 -2.4725549880676714 0.2881302457708468 NLVS(ph)PAMR ddPTM_BT-474_Trastuzumab_2h_R1 3 NLVSPAMR 8 0 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 1 NLVS(1)PAMR;NLVS(1)PAMR;NLVS(1)PAMR 131.02 0.0010732 465750000.0 703470.0 848260.0 759980.0 788870.0 773920.0 694510.0 566420.0 563250.0 664920.0 600500.0 True False 699682.5956828641 876493.8213160007 866978.5781354209 888740.8611153361 872474.124616775 646500.1584006876 539020.100665473 605282.575125547 501059.375471522 562175.5758860848 1.2445979969514767 1.5591104610592457 1.5421847111890523 1.5808955408895673 1.5519602096579999 1.1499968802125438 0.9588109547731333 1.0766788901697093 0.891286275967729 1.0 19.100661250614245 2.5968669142365903 3.431272268578435 0.9996277686937283 1.5066912581219518 0.8532251466272442 0.10116780061611123 0.0890829182134926 1.940062620411534 0.034617894836603 0.03203620058801864 395.245481970913 -2.5968669142365903 0.5070634894282235 NLVS(ph)PAYCTQESR ddPTM_BT-474_Trastuzumab_2h_R1 2 NLVSPAYCTQESR 13 0 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 NLVS(1)PAYCTQESR;NLVS(1)PAYCTQESR 139.08 4.3629e-05 713160000.0 475740.0 464790.0 383630.0 428760.0 410090.0 377170.0 396370.0 394420.0 595640.0 405430.0 True False 473178.6686996835 480260.25417851144 437641.76942826353 483040.97203824687 462312.53070613684 351097.12566267926 377196.06881955726 423853.6232241778 448852.5031670836 379555.11029391404 1.246666573223769 1.2653241680941008 1.1530388013729265 1.2726504239771586 1.2180379559325083 0.9250227862583699 0.9937847195034997 1.116711675666705 1.182575312500754 1.0 18.53394985039464 2.860737803144234 8.099618368526345 1.052276428968934 1.2324427649720626 0.6245414089667793 0.0726099758762815 0.21238663930602314 13.177619822013776 0.02339841860725295 0.02484651990545004 725.6677173732636 -2.860737803144234 0.1801663360031287 NLYSDDIPHALR ddPTM_BT-474_Trastuzumab_2h_R1 5 NLYSDDIPHALR 12 0 P60228;H0YBR5;E5RIT4 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 ;;;; 198.74 1.7972000000000005e-07 4630430000.0 3511670.0 3823810.0 3441940.0 3755830.0 3687200.0 4158340.0 3988920.0 3618360.0 4802660.0 4133600.0 False True 3492763.5589032113 3951083.20430804 3926535.2341212076 4231317.692906075 4156743.064253373 3870883.7434794544 3795960.7004458136 3888380.3968597883 3619108.795346899 3869790.1090469966 0.9025718347715156 1.0210071070963234 1.0146636183036257 1.093423047160589 1.0741520721073536 1.0002826082039697 0.9809215987118834 1.0048039524855186 0.9352209534274115 1.0 21.88382388844611 2.4860629810032195 22.76161513021038 0.984157126180694 1.0260490752012503 0.12282877104220724 0.05033620477685756 285.1027293965639 725752.0867182361 0.017586971247151098 0.015478555910809976 306.24075091296527 -2.4860629810032195 0.041891949020556374 NMAPGAVCS(ph)PGESK ddPTM_BT-474_Trastuzumab_2h_R1 1 NMAPGAVCSPGESK 14 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 NMAPGAVCS(1)PGESK 202.18 1.0814e-07 0.0 422810.0 344830.0 259690.0 285920.0 250290.0 418350.0 291640.0 234960.0 478290.0 340650.0 True False 420533.63793860684 356307.45809586346 296252.0947340557 322117.44268396223 282162.9479149425 389430.4491899722 277532.2590270092 252493.90830270475 360421.8382576467 318909.4253548624 1.3186616779063942 1.1172685087604008 0.9289537128117331 1.0100593368337425 0.8847745644424566 1.2211318268710258 0.8702541755176684 0.7917417555838789 1.1301699153500775 1.0 18.282787211449293 4.578910978298195 2.392213527943772 0.9633959056954183 1.3458870470966715 0.42637290242246606 0.12030647295116431 0.36612730850299885 3.2071068268397704 0.03110731741358973 0.24885462369784014 37923.724093981065 -4.578910978298195 0.3824911414012532 NMDPLNDNIATLLHQSSDK ddPTM_BT-474_Trastuzumab_2h_R1 3 NMDPLNDNIATLLHQSSDK 19 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;; 240.46 2.528e-24 1265460000.0 985070.0 1175070.0 1066130.0 1080210.0 1070140.0 1402880.0 1167910.0 1138420.0 1244700.0 1356010.0 False True 979766.4925715665 1214181.4946051838 1216231.8370319186 1216964.4752435742 1206415.9857832782 1305902.2076243067 1111413.7314505372 1223374.6811796278 937960.3631254934 1269468.280861432 0.77179281069293 0.9564488635992293 0.9580639826673035 0.9586411047763794 0.9503317286231304 1.028700147386236 0.8754954717705569 0.9636906251406879 0.738860810676589 1.0 20.275792917349683 4.742396336953594 24.476023664023238 0.9384972058022687 0.7717927240930921 0.29782833117897367 0.07591359350411693 339.10538060957526 2163737.363889208 0.017004076189600804 0.12731224333435018 55258.149487503906 -4.742396336953594 -0.16670448170917662 NMDPLNDNIATLLHQSSDKFVSELWK ddPTM_BT-474_Trastuzumab_2h_R1 3 NMDPLNDNIATLLHQSSDKFVSELWK 26 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;; 387.74 4.1547999999999974e-145 1683084000.0 729959.0 1022852.0 1143391.0 1272259.0 1186820.0 1519890.0 1499206.0 1374370.0 1866380.0 1672630.0 False True 726028.9818500697 1056897.0104929078 1304370.5142672677 1433326.8589523467 1337954.4921667373 1414823.5817362182 1426683.678256916 1476932.468309451 1406435.6572106997 1565881.32138941 0.46365517739611495 0.6749534565972859 0.8329944909936705 0.9153483341129279 0.8544418238411372 0.9035318081965765 0.9111058793338288 0.9431956612133067 0.8981751285996351 1.0 20.57854344381067 4.900405664906453 0.9306780986012704 0.9226101470988269 0.08451517809709365 0.9483749083378394 0.0339706848982807 0.5101807916940001 0.2858094678552663 0.010389280108149511 0.4632775362098361 79507.05458606522 -4.900405664906453 -0.8380949690017333 down NMFHPMDFEDDPLVLNEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 NMFHPMDFEDDPLVLNEIR 19 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 ;;; 207.82 2.9956e-16 382690000.0 400532.0 388955.0 327868.0 357428.0 321826.0 386441.0 306219.0 304821.0 492708.0 398269.0 False True 398375.5802152889 401901.1320467378 374028.9645202561 402678.3481520815 362808.6334878516 359727.2432542653 291406.0170998209 327568.29086967465 371286.7153489484 372851.13144475466 1.0684574797228856 1.0779131351684996 1.0031589902139695 1.0799976564151752 0.9730656631830791 0.9648012649455137 0.7815613056359962 0.8785498104843767 0.9958041803715484 1.0 18.508240193934036 2.8717446723831266 2.0679582373612204 0.8981610645052861 1.0545813238471686 0.4685180088526637 0.06458882975637587 0.24918506482767258 2.107569444106353 0.022553238688453582 0.024357112254318133 744.2942645568951 -2.8717446723831266 0.15642025934188253 NMGGPYGGGNYGPGGS(ph)GGSGGYGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 NMGGPYGGGNYGPGGS(0.831)GGS(0.169)GGYGGR 146.6 2.6726e-07 82785000.0 49704.0 48471.0 44348.0 42596.0 46529.0 49093.0 40303.0 41044.0 62887.0 47395.0 True False 49436.39918663355 50084.32793366178 50591.812920273835 47988.64923253374 52454.19235101031 45699.31646249148 38353.389917588676 44106.91169720895 47389.341492627085 44370.21052309903 1.1141799555108507 1.1287827428176838 1.1402202586786434 1.0815510827371657 1.1821939029048054 1.0299549162314774 0.8643950403981516 0.9940658648497283 1.0680440983699255 1.0 15.43730377787122 2.519241307993839 6.74253164630043 0.9745049372121352 1.1257998051868203 0.6422391161894812 0.05237405952740245 0.13327550048978976 16.802134333704664 0.017195574049652843 0.015916526669840867 330.55315599469 -2.519241307993839 0.15129486797468517 NMGGPYGGGNYGPGGSGGS(ph)GGYGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 NMGGPYGGGNYGPGGS(0.103)GGS(0.897)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR 449.37 1.0215999999999991e-204 3899260000.0 2255140.0 1971990.0 1700580.0 1827430.0 1689800.0 2132930.0 1599210.0 1689460.0 2469530.0 2070820.0 True False 2242998.576809609 2037626.4950568725 1940006.8822936576 2058782.4506293796 1904986.0137707058 1985485.5694771525 1521850.1027245363 1815536.084104052 1860947.4215066286 1938658.4946818002 1.1569848856633005 1.0510497339508558 1.0006955261153816 1.0619624117796445 0.9826310404831661 1.0241543701089233 0.7850016425787893 0.9364909235352683 0.9599150271239872 1.0 20.886627256512405 NMGGPYGGGNYGPGGSGGSGGYGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 454.58 8.038699999999994e-205 530510000.0 123357.0 105807.0 94346.0 117376.0 96071.0 124145.0 98966.0 85204.0 163522.0 128887.0 False True 122692.85961825121 109328.72203331774 107629.09672986733 132235.7895651677 108305.07239257045 115563.14835589586 94178.63649316624 91562.35513714528 123224.19418253971 120661.3213142877 1.0168366986357786 0.9060792708257203 0.8919933542707094 1.0959252569490092 0.8975956106967136 0.9577480761617669 0.7805205136769408 0.7588376634684111 1.021240218823532 1.0 16.88060376038174 2.2730440238946095 23.191932866654327 0.8549393088552432 0.9586423733721218 0.06812116940117097 0.0983045939716577 132.69113635118654 89240.9052699864 0.03388982253131093 0.02835207671331235 187.51845835758988 -2.2730440238946095 0.1037030645168786 NMITQYWPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NMITQYWPDR 10 0 O95373 O95373 IPO7 Importin-7 0 135.86 0.0094921 0.0 148020.0 109470.0 106210.0 95567.0 86726.0 108660.0 83269.0 115790.0 149710.0 117730.0 False True 147223.0767665681 113113.64277398745 121163.44480613059 107665.77240129474 97770.04203472496 101148.5899581268 79240.96035152946 124430.83776970618 112815.97651122186 110216.37060627606 1.3357641515205614 1.0262871309568091 1.0993234865169037 0.9768582635142943 0.8870736851242099 0.917727461009019 0.7189581721448668 1.1289687465232203 1.0235863864020012 1.0 16.749978999964853 7.999997758022453 0.8249489354822492 0.9522345850697365 113.85340060499274 0.5262486865117386 0.1062324201069391 480.11490256699614 1.4782105431276218 0.03619825530432473 101536.85913936663 99999483.7669247 -7.999997758022453 112.90116601992301 NMLAFSSPAAGGVCEPLKS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NMLAFSSPAAGGVCEPLKSPQR 22 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 NMLAFSSPAAGGVCEPLKS(1)PQR;NMLAFSSPAAGGVCEPLKS(1)PQR 284.27 4.1321999999999995e-46 1258110000.0 988590.0 776160.0 515360.0 591720.0 379460.0 816320.0 509590.0 562470.0 1372210.0 797030.0 True False 983267.5412826756 801994.0164013727 587918.2084105781 666631.691329582 427781.9817643703 759889.7198105844 484939.1848771558 604444.3675647872 1034047.2321719559 746162.8630282868 1.3177653163976886 1.074824352885235 0.787922097897668 0.893413119790056 0.5733091298972262 1.018396596054898 0.649910641369955 0.8100702909706092 1.3858197498268625 1.0 19.509131032583745 4.528281945878247 2.8919313428788307 0.8617051640676803 1.3187302518101185 0.27102800840975483 0.21412097061446117 0.34684510834812843 5.108586708094723 0.051358308434551164 0.28939595092291187 33750.634814871904 -4.528281945878247 0.4570250877424382 NMPGLSAATLASLGGTS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 2 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-3;Q32MZ4-4 Q32MZ4-2;Q32MZ4-3;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 NMPGLSAATLASLGGT(0.142)S(0.429)S(0.429)R;NMPGLSAATLASLGGT(0.133)S(0.433)S(0.433)R 235.44 3.8492000000000005e-24 1117740000.0 1419260.0 657390.0 587250.0 723880.0 637250.0 828710.0 593570.0 735270.0 1426350.0 880940.0 True False 1411618.8618546089 679270.8287493531 669929.6955314954 815523.133778912 718400.0102233296 771423.2282735069 564856.7514424014 790139.5810254076 1074845.154610789 824717.6549893213 1.7116389509969774 0.8236404600288914 0.8123139979829459 0.9888513103184043 0.8710860084990321 0.9353785790889799 0.6849092510935945 0.9580728340726968 1.30328864443275 1.0 19.65354076656432 4.742652009129183 24.922647243183665 0.9165529082482113 1.7116392759661951 0.6958189783942428 0.15461495651358942 212.4291109838522 1293957.269182935 0.036303955617857445 0.27959729359311747 55290.6899210598 -4.742652009129183 0.7950863677179838 NMPGLSAATLASLGGTSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-3;Q32MZ4-4 Q32MZ4-2;Q32MZ4-3;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 NMPGLSAATLASLGGT(0.008)S(0.032)S(0.96)R;NMPGLSAATLASLGGT(0.006)S(0.116)S(0.878)R 325.9 5.920499999999999e-63 1134920000.0 963930.0 496820.0 409370.0 622410.0 424400.0 641860.0 467490.0 519770.0 1008170.0 673660.0 True False 958740.3079826916 513356.35336596856 467005.73769217345 701207.042182865 478444.82438412105 597489.7289759186 444875.7227147742 558557.8767385812 759720.0122858753 630666.442050657 1.5202018754403341 0.813990279388822 0.7404956194809905 1.11185088571201 0.7586337126618368 0.9473941994331235 0.7054057312265244 0.8856629106860203 1.2046304696593517 1.0 19.26651764345507 4.742941228368333 24.82132224816827 0.8922009278236228 1.520202152593717 0.5806415965426985 0.15570230660064946 270.6263325222187 1533355.1084563497 0.03535057283605065 0.2798866278919242 55327.523124754494 -4.742941228368333 0.6280012247700942 NMQNVEHVPLSLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 NMQNVEHVPLSLDR 14 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 ;;;;; 95.822 0.0036157 7109790000.0 10836260.0 14357970.0 13143200.0 13450030.0 13465940.0 12991090.0 12187850.0 11531770.0 12368610.0 14066060.0 False True 10777918.780181674 14835866.351873865 14993648.317257669 15152802.418937344 15180747.640120432 12093046.52603647 11598277.133391626 12392329.234541547 9320531.796382753 13168352.008240148 0.818471345042823 1.1266304502332762 1.1386123569506141 1.150698463213576 1.1528206134390255 0.9183416815155911 0.880769068607367 0.941069104682727 0.7077978922913356 1.0 23.650571470830577 2.631812240699246 5.32423523474292 0.8865638174230431 1.0871296428827864 0.39944002623302266 0.11528108558381932 0.22680124371634414 9.399880770513446 0.037304575484395947 0.035069251699081365 428.3632853027694 -2.631812240699246 0.20056582545974322 NMSVIAHVDHGK ddPTM_BT-474_Trastuzumab_2h_R1 4 NMSVIAHVDHGK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;; 192.18 2.5544e-06 1578440000.0 2748890.0 2200930.0 1826600.0 1991640.0 1846420.0 2712440.0 1916620.0 944258.0 3599910.0 2248050.0 False True 2734090.2816703883 2274186.6245597186 2083769.4029081857 2243781.4197925497 2081550.6424112385 2524935.407196959 1823905.7684005843 1014723.3268049692 2712760.4168226044 2104577.5243475647 1.2991159746030156 1.08059056900968 0.9901129223330323 1.0661433916472804 0.989058667751636 1.1997350432504066 0.8666374829627668 0.48215060508143615 1.2889809880791068 1.0 21.005099223185518 2.133033934465098 6.641794932495984 0.8201812924481701 1.0901912585494362 0.11836476036905996 0.21059037790589172 0.2927928113355357 16.350675279407177 0.07874930151598056 0.05800642485672522 135.8419585262689 -2.133033934465098 0.27000996610126615 NMTVEQLLTGSPT(ph)SPTVEPEKPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 NMTVEQLLTGS(0.001)PT(0.499)S(0.499)PT(0.001)VEPEKPTR 198.15 2.8885e-24 280950000.0 296910.0 218010.0 210440.0 207300.0 188960.0 245970.0 165060.0 160800.0 290930.0 219640.0 True False 295311.4695498021 225266.33106017206 240068.12282272975 233544.15874505223 213022.93594633244 228966.67285109963 157075.41720956724 172799.71252585502 219234.1997622721 205622.3871567352 1.4361834508063636 1.0955340718248898 1.1675193841599474 1.1357914961226168 1.0359909681622175 1.1135298836724927 0.7639023132721285 0.8403740220861206 1.0661981061194534 1.0 17.649637821078148 6.479406373074912 0.3519255778721037 0.9015780197658636 2.897904940282405 0.5934260980122561 0.11094941186297186 14.668820558442178 0.5487251860277389 0.09944616766266738 15.942063906016877 3015826.6392191146 -6.479406373074912 1.9963269205165413 NMTVEQLLTGSPTS(ph)PTVEPEKPTR ddPTM_BT-474_Trastuzumab_2h_R1 3 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 NMTVEQLLTGSPT(0.287)S(0.712)PT(0.001)VEPEKPTR;NMTVEQLLTGSPT(0.065)S(0.934)PTVEPEKPTR;NMTVEQLLTGSPT(0.027)S(0.967)PT(0.006)VEPEKPTR 214.61 8.957799999999999e-33 645690000.0 450870.0 356100.0 330710.0 331798.0 298366.0 404291.0 315629.0 300465.0 447491.0 359802.0 True False 448442.56601636583 367952.5732330042 377271.0934171499 373803.5927799848 336361.14154616534 376343.314768646 300360.8194501298 322887.22403035493 337212.8391221908 336839.1283180104 1.3313256338586366 1.0923688559294082 1.1200334572204675 1.1097392237254462 0.9985809642299222 1.117279090015159 0.8917040634500117 0.9585799180833782 1.0011094637551359 1.0 18.36170021067813 7.999999999999958 0.36848750688896104 0.9643934374815402 5.376087580578084 0.7170937584553616 0.061439836667319905 33.58494354953972 0.4659814922869488 0.04736214874733711 104.70114688121457 99999999.99999039 -7.999999999999958 4.411694143096544 NMVDLVNTHHLHSSS(ph)DDEDDRLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NMVDLVNTHHLHSSSDDEDDRLK 23 1 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 NMVDLVNTHHLHSS(0.042)S(0.958)DDEDDRLK;NMVDLVNTHHLHS(0.001)S(0.085)S(0.915)DDEDDRLK 276.1 4.7541e-52 1839710000.0 659640.0 561760.0 586460.0 589800.0 584260.0 921970.0 702990.0 260054.0 1226390.0 760610.0 True False 656088.5715328936 580457.8420089087 669028.4703982999 664468.619526443 658662.0478196674 858236.3839839343 668983.68801741 279460.55000745476 924162.6172840638 712067.2186090169 0.9213857264971776 0.8151728191374972 0.9395580261442301 0.9331543457715199 0.9249998182844683 1.2052743920166002 0.9394951354792486 0.3924637207051396 1.297858675602794 1.0 19.441653911382012 NMYELHK ddPTM_BT-474_Trastuzumab_2h_R1 3 NMYELHK 7 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 0 ;; 101.99 0.0087016 488816000.0 593180.0 546220.0 496950.0 476930.0 413030.0 615910.0 554050.0 515360.0 850480.0 556930.0 False True 589986.384788493 564400.6025030379 566916.2404331666 537309.2890992659 465626.92227939074 573333.591396189 527248.4848234628 553818.7801450547 640890.5998481314 521386.2505882381 1.1315725800648921 1.082499973611253 1.0873248763149406 1.0305398128413688 0.893055621919568 1.0996331237146029 1.0112435535624709 1.0622044204660663 1.2292050262642449 1.0 18.991993012680993 -1.0464109150239211 7.523242802672117 0.9999999960801185 1.0624240765608886 0.05469950650345423 0.08205289712457978 5.580415218179098e-09 7.761822269881947e-10 0.07837519490691577 0.0184732094974101 0.08986469092763923 1.0464109150239211 0.06242408048077008 NNASTDYDLSDK ddPTM_BT-474_Trastuzumab_2h_R1 4 NNASTDYDLSDK 12 0 P39023;G5E9G0;B5MCW2 P39023 RPL3 60S ribosomal protein L3 0 ;;; 388.72 1.5833999999999995e-81 1083470000.0 1859630.0 1457510.0 1322180.0 1325450.0 1377830.0 1915990.0 1806180.0 1735890.0 2742010.0 1873400.0 False True 1849617.9587043144 1506022.3392665996 1508331.4514054218 1493251.83409855 1553288.4834617653 1783542.1210553234 1718808.173122354 1865430.9264708129 2066278.3765515669 1753838.0081015653 1.0546116289875744 0.8587009360669445 0.8600175412084432 0.8514194738628765 0.8856510557341131 1.0169366342937858 0.9800267557109626 1.063627836695158 1.1781466515189742 1.0 20.742084069842743 2.2413899759379277 1.3078851169820405 1.0851981276039135 0.8960145063382913 0.5070803190530848 0.07291934651950115 0.3439080184897332 1.1437856489451033 0.04478745233528356 0.02590363404776455 174.33716361544572 -2.2413899759379277 -0.18918362126562227 NNDLCYWVPELVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNDLCYWVPELVR 13 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 197.07 3.1816e-07 99873000.0 129785.0 146032.0 133684.0 145957.0 134912.0 137617.0 146096.0 135275.0 206662.0 152506.0 False True 129086.25198046915 150892.58684179175 152505.54519784162 164435.14123469157 152092.24351392698 128103.86070557278 139028.7783390822 145369.90741253144 155732.91922892327 142772.93651304435 0.9041367021870793 1.0568710746381935 1.0681684423007443 1.1517248664257045 1.0652736241789857 0.8972559074168 0.9737754348589722 1.0181895180060951 1.0907733848753252 1.0 17.123363008014362 NNFEGEVTKENLLDFIK ddPTM_BT-474_Trastuzumab_2h_R1 2 NNFEGEVTKENLLDFIK 17 1 P07237;H7BZ94;I3L398;I3L312;I3L4M2;I3NI03 P07237 P4HB Protein disulfide-isomerase 0 ; 150.91 2.4608e-07 2062640000.0 1876120.0 1765260.0 1563010.0 1470140.0 1659290.0 2271770.0 2262810.0 1987220.0 3357300.0 2049600.0 False True 1866019.178376527 1824015.611977798 1783068.2220735338 1656259.5732631516 1870590.7461176454 2114727.8870713604 2153349.2355263564 2135516.4472986925 2529938.4005151633 1918792.773249158 0.9724964594361758 0.950605837903553 0.9292656543907047 0.863177929557526 0.9748789823458162 1.1021137438882567 1.1222416852654786 1.1129479311528514 1.3185052788327587 1.0 20.871767480362895 2.728396389797521 2.5697123474855488 1.1416848018913264 0.9289490325602935 0.6159988328532402 0.07718322431364527 0.1844756901258455 2.4178677840660656 0.025933766455879716 0.02567457328586774 535.0524903711586 -2.728396389797521 -0.2127357693310329 NNKNEFVSLINCSSQPPLISHGIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NNKNEFVSLINCSSQPPLISHGIGK 25 1 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 ; 230.9 1.1787999999999998e-34 808860000.0 438980.0 345870.0 361890.0 372480.0 364550.0 498960.0 459470.0 477400.0 644090.0 457280.0 False True 436616.58045526326 357382.0738671696 412840.9663957315 419635.9298087653 410973.2816428633 464468.0696255012 437243.6807541487 513026.0121880804 485362.6498638217 428095.9989028958 1.0199034365520903 0.8348175988167409 0.964365393401809 0.980237915991246 0.960002622533465 1.084962416878032 1.0213682956035472 1.198390112271171 1.1337705820836592 1.0 18.707574826229703 2.657889850245278 1.217163634159413 1.1211214760140629 0.935779412745601 0.4768459710202235 0.06935959788906546 0.3303450404211308 1.0048058942755187 0.033225410669957246 0.028729729303829846 454.87267653292287 -2.657889850245278 -0.18534206326846192 NNLAGAEELFAR ddPTM_BT-474_Trastuzumab_2h_R1 6 NNLAGAEELFAR 12 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 250.16 9.922799999999999e-17 1832897000.0 1067454.0 1138641.0 1045803.0 1082901.0 1085636.0 1219253.0 1231663.0 1111284.0 1345568.0 1110992.0 False True 1061706.946269288 1176539.9773619801 1193042.9721173693 1219996.1555676602 1223885.3095312899 1134968.9099228412 1172082.755280425 1194213.6550658122 1013970.7960874469 1040087.5393918945 1.0207861416069206 1.1311932244182688 1.1470601530472164 1.1729744943208842 1.1767137506972307 1.0912244084631768 1.126907794670537 1.148185714987058 0.9748898604056758 1.0 19.98827352781716 1.2373213627509512 24.99870301060758 0.9874448603068844 1.1305294859969997 0.6270713432538193 0.04293819655314903 20.028928008109762 403950.7759735493 0.03429211467087645 0.010402948156668533 17.27115424370026 -1.2373213627509512 0.14308462569011526 NNPAIVIIGNNGQIHYDHQNDGASQALASCQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNPAIVIIGNNGQIHYDHQNDGASQALASCQR 32 0 P49257 P49257 LMAN1 Protein ERGIC-53 0 ; 215.47 5.303e-36 243500000.0 173151.0 166314.0 185181.0 161983.0 160489.0 202809.0 196912.0 110207.0 239378.0 171165.0 False True 172218.77425488475 171849.66095106374 211252.8751778935 182490.03119150884 180926.32285717083 188789.29119103373 187386.61428311106 118431.20595980666 180386.49940086334 160241.10315827074 1.0747478072762868 1.0724443202399023 1.3183438644280814 1.1388465730372734 1.1290881009379299 1.1781577102883887 1.169404170277264 0.739081319496607 1.1257192807933611 1.0 17.28988473277376 1.7746401528856652 24.999999999999847 0.9287805500901658 1.1569223284733574 0.4014389660231862 0.11022576886660594 33.791843660804695 23424.997322036063 0.048744309225943847 0.0270520042150177 59.51687950405486 -1.7746401528856652 0.2281417783831916 NNPHYDPSSKEDNPK ddPTM_BT-474_Trastuzumab_2h_R1 2 NNPHYDPSSKEDNPK 15 1 Q9P016-2;Q9P016 Q9P016-2 THYN1 Thymocyte nuclear protein 1 0 ; 154.69 1.4621000000000004e-06 205945000.0 358450.0 253206.0 260573.0 246930.0 248748.0 385500.0 360570.0 328380.0 617520.0 342200.0 False True 356520.1450275388 261633.80864374083 297259.41345888213 278191.31268169644 280424.5833550929 358851.29236939 343127.8515888381 352885.383079853 465340.4703440633 320360.5030278405 1.1128717231304757 0.8166855969164335 0.9278903318273576 0.8683695713185985 0.8753406887075682 1.120148360917652 1.0710679011482855 1.1015258739595186 1.452552564832324 1.0 18.28933676451066 2.3623104284983736 1.3402114380572858 1.1861434425090716 0.9124692297487034 0.41047058792548907 0.13453199631748003 0.4096986379926803 1.4688703050546696 0.07289691588097118 0.04780501222094605 230.30874485464233 -2.3623104284983736 -0.2736742127603682 NNQFQALLQYADPVSAQHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NNQFQALLQYADPVSAQHAK 20 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0U1RRM4;K7EK45;A0A087WU68;K7EKJ7 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 203.81 1.025e-21 782140000.0 786550.0 714960.0 786320.0 700050.0 675530.0 947850.0 910850.0 814330.0 1167400.0 927200.0 False True 782315.3021939204 738757.0113975536 897027.0211840369 788676.258222256 761554.7413199932 882327.3604988998 866788.7057150985 875099.4396839527 879709.9123585607 868025.302184143 0.9012586386888062 0.8510777387924962 1.0334111447292138 0.9085867154307284 0.8773416390095468 1.0164765454172473 0.9985753912173609 1.0081496904318452 1.0134611400670195 1.0 19.72737757102772 2.726265359499076 24.854911489221198 1.007123650338063 0.917116845969988 0.518473909693933 0.044770922561076475 601.2102640813679 1215346.6769134225 0.014636523610995515 0.013891291634017727 532.43348358648 -2.726265359499076 -0.09000680436807496 NNQITNNQR ddPTM_BT-474_Trastuzumab_2h_R1 3 NNQITNNQR 9 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;; 205.36 0.00013811 164136000.0 156844.0 164263.0 146462.0 141804.0 142704.0 172131.0 186079.0 155194.0 195877.0 173105.0 False True 155999.56933100676 169730.39465591966 167082.5765294745 159756.37186050843 160876.50852712442 160231.9891227898 177077.6478791895 166775.36433916385 147605.73796732753 162057.29069735322 0.9626198775736697 1.0473480947728306 1.0310093165848746 0.9858018184375189 0.9927137979096914 0.9887366895576933 1.0926854763349538 1.0291136154474023 0.9108244209943359 1.0 17.306144401086474 NNRPSEGPLQTR ddPTM_BT-474_Trastuzumab_2h_R1 8 NNRPSEGPLQTR 12 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;;;; 220.4 2.7034000000000005e-11 13621330000.0 3515470.0 3502360.0 3511694.0 3465878.0 3561430.0 3987400.0 3982030.0 3752060.0 4611680.0 3771770.0 False True 3496543.1001254385 3618933.93537867 4006109.9910085658 3904657.7994355215 4014957.0002505668 3711760.4233299764 3789403.9960681726 4032057.769774629 3475193.2573460108 3531052.409425238 0.9902269053816121 1.0248881964251946 1.1345371086295075 1.1058056768041844 1.1370425965736644 1.05117681443141 1.0731656052324037 1.1418855633555836 0.9841805938846657 1.0 21.751666803691798 4.41858809190186 6.31880083829682 1.0879365269772112 0.9983205179265989 0.21910047904101415 0.052882129438980845 0.20667411613266926 16.301173819083182 0.012209712195766774 0.0347214267608171 26217.307742158166 -4.41858809190186 -0.08961600905061229 NNS(ph)FTAPSTVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NNSFTAPSTVGK 12 0 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-2;O95453-3;O95453;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 NNS(0.999)FT(0.001)APSTVGK 144.55 6.6233e-05 106440000.0 198510.0 117100.0 88930.0 128510.0 125800.0 166280.0 126370.0 120180.0 243030.0 166290.0 True False 197441.24421653437 120997.60271155513 101450.57100658311 144779.35282357293 141819.88432498235 154785.4549810173 120257.00031972017 129148.4418616747 183138.5129351561 155677.22983196852 1.2682731085955485 0.7772337858410948 0.6516725093071389 0.9299969750222412 0.9109866900770061 0.9942716423467083 0.7724764915814634 0.8295910840722958 1.1763988422252125 1.0 17.248198418142017 1.2453271553426315 24.999597817926674 1.088199441395304 0.8772115460627817 0.1873791306112076 0.16131278894499546 212.3684468216316 784636.3445873493 0.11046948630482493 0.038329282200014275 17.592483620230016 -1.2453271553426315 -0.21098789533252227 NNS(ph)PPTVGAFGHTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNSPPTVGAFGHTR 14 0 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 NNS(0.999)PPT(0.001)VGAFGHTR;NNS(0.984)PPT(0.016)VGAFGHTR 122.16 7.109e-05 526530000.0 300410.0 348480.0 349090.0 329300.0 343700.0 397340.0 369160.0 302825.0 385230.0 393060.0 True False 298792.6259386887 360078.9461393918 398238.8376553262 370989.34623611055 387468.1577304962 369872.82103775145 351302.3204718514 325423.33921419224 290295.2283175336 367974.5742844038 0.8119925854109553 0.9785430062379539 1.082245528593319 1.0081928811455778 1.0529753542999576 1.0051586356395388 0.9546918320512368 0.8843636543286707 0.7889002355178143 1.0 18.48924655914015 1.8730386150089728 2.936141248512995 0.8776784085185897 0.9966072754968647 0.21448281149174742 0.08253295052273413 0.3448723264313137 5.247184342890874 0.04442274835102546 0.023078184889455414 74.65151313624801 -1.8730386150089728 0.11892886697827498 NNSGEEFDCAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNSGEEFDCAFR 12 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 233.13 1.2693e-15 1577200000.0 842340.0 912760.0 803380.0 837510.0 805240.0 951890.0 876690.0 851120.0 1165340.0 939080.0 False True 837804.9350327717 943140.6648249293 916488.9208958584 943538.6801281654 907782.5409685896 886088.0848080378 834281.1554189724 914634.8962997876 878157.5717559763 879147.1104131629 0.9529746786508095 1.0727904962136452 1.0424750420497275 1.0732432251125084 1.0325718303754297 1.0078951227987465 0.9489664989365598 1.0403661519969587 0.9988744333622145 1.0 19.745745070642275 2.739408677887253 4.342969425583065 1.0003470250263533 1.0398674443815705 0.18049138294716616 0.03748018989412522 0.3383088995137886 16.449475153196254 0.011843419877385904 0.011852675473109897 548.7931449326442 -2.739408677887253 0.03952041935521722 NNSGLSFEELYR ddPTM_BT-474_Trastuzumab_2h_R1 1 NNSGLSFEELYR 12 0 Q13618;Q13618-2;A0A087X1R9;H7C1L6 Q13618 CUL3 Cullin-3 0 154.94 0.00016732 464070000.0 591580.0 478610.0 446920.0 421340.0 438390.0 523020.0 550160.0 513240.0 700250.0 502590.0 False True 588394.9990107162 494540.24452414527 509842.45130172203 474681.6007990371 494216.36795889516 486864.8584566496 523546.6589847055 551540.5749799124 527682.7703692678 470514.27591105294 1.2505359117349029 1.0510632085850553 1.0835855093121634 1.0088569573790613 1.0503748627009204 1.0347504494182183 1.1127115281910764 1.1722079503580818 1.1215021464492654 1.0 18.84387897097963 2.025124492050845 22.202813467925193 1.1233931210014345 1.0741183940420171 0.0 0.07465204586477679 160.54457507656466 141872.80760821674 0.027382974357657755 0.02022188818679574 105.95574075316003 -2.025124492050845 -0.04927472695941737 NNSHVNREEVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 NNSHVNREEVIR 12 1 Q9NXG2 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 0 72.705 0.024739 26144000.0 10457.0 12952.0 13853.0 14419.0 13011.0 12851.0 13306.0 10641.0 16842.0 14629.0 False True 10400.700673881924 13383.09949035067 15803.381987565468 16244.44392158663 14667.873727761073 11962.640618000072 12662.337946143825 11435.085453903139 12691.51477123771 13695.364695482987 0.7594321805327527 0.9771992048349535 1.153921953810967 1.1861271519804348 1.0710100865440144 0.8734809830909868 0.9245710667580925 0.8349602736519068 0.9267014828326281 1.0 13.741400063800794 2.737398060488405 24.975570616933222 0.8974110358978475 1.0422400047511347 0.19525894735300475 0.11610663216214956 151.68258639696103 3258610.1808623658 0.03897051976739953 0.03868895640593662 546.2583146774368 -2.737398060488405 0.1448289688532871 NNSLWDR ddPTM_BT-474_Trastuzumab_2h_R1 5 NNSLWDR 7 0 E7EPM6;P33121-2;P33121;P33121-3;B7Z3Z9;H0Y9U7 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ;;;; 143.61 0.0056069 1824800000.0 1476180.0 1470390.0 1464780.0 1483550.0 1496510.0 1760590.0 1619770.0 1437480.0 2032230.0 1539590.0 False True 1468232.4108990177 1519331.0422804733 1671008.2919040031 1671367.277888193 1687081.6779902957 1638884.5572830734 1541415.5369777107 1544752.0569755353 1531414.1469868408 1441332.0480906868 1.0186635431051196 1.0541159091641032 1.1593499874769075 1.1595990529054223 1.170501745399438 1.1370624551463224 1.0694381901933028 1.0717530766223144 1.0624991992757564 1.0 20.45897130521812 1.293257308767769 1.023817711289528 1.0072477368215997 1.117273783342829 0.3481346801897657 0.047310473886718614 0.5715130970908108 1.2403582192772835 0.04835520944707856 0.016704682489816294 19.645238640341073 -1.293257308767769 0.11002604652122927 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7-7;Q68EM7-2 Q68EM7;Q68EM7-2 ARHGAP17 Rho GTPase-activating protein 17 1 NNSQIASGQNQPQAAAGS(0.001)HQLS(0.044)MGQPHNAAGPS(0.773)PHT(0.182)LR;NNSQIASGQNQPQAAAGSHQLS(0.016)MGQPHNAAGPS(0.934)PHT(0.05)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(1)PHTLR;NNSQIASGQNQPQAAAGS(0.048)HQLS(0.167)MGQPHNAAGPS(0.618)PHT(0.167)LR 323.64 2.448799999999999e-110 2525910000.0 329198.0 306017.0 379166.0 346803.0 407338.0 456221.0 452941.0 316575.0 531734.0 361209.0 True False 327425.63454533654 316202.59085381747 432549.2770300477 390708.2242414878 459210.0798185178 424683.5160987169 431030.51342735096 340199.43403527734 400695.28057055606 338156.3323734166 0.9682670504711104 0.9350781297942509 1.2791399587111552 1.1554070908541783 1.357981607487465 1.2558792352578239 1.2746486525982783 1.0060418849693598 1.1849409347392599 1.0 18.367330844605114 4.249221525284951 24.986706087027006 1.1912821242087412 0.9516724478276354 0.43053673925049896 0.10927547796625833 197.1052886138068 461960.0168852621 0.027504716460226942 0.07369499252237867 17750.94691759096 -4.249221525284951 -0.23960967638110586 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHT(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7-7;Q68EM7-2 Q68EM7;Q68EM7-2 ARHGAP17 Rho GTPase-activating protein 17 1 NNSQIASGQNQPQAAAGS(0.008)HQLS(0.235)MGQPHNAAGPS(0.32)PHT(0.438)LR 138.15 1.1285999999999998e-09 703520000.0 43937.0 34811.0 45215.0 38077.0 47385.0 56852.0 52294.0 36060.0 75795.0 51959.0 True False 43700.448073859596 35969.66309130613 51580.87898417473 42897.54429587724 53419.198877100775 52921.95505521284 49764.33943752032 38750.980308969774 57116.33785096556 48642.93213566205 0.8983925547905258 0.7394632994365764 1.0603982268239696 0.8818864820122009 1.098190354317417 1.0879680301264913 1.0230538590628282 0.7966415388138147 1.174196031021973 1.0 15.569942574821107 4.235114255681105 24.99874514623684 0.9987077730514121 0.8189279173945745 0.3311436256721846 0.10962103175760073 98.6302935270447 715453.7621988138 0.027579703560836465 0.06361627105449602 17183.603998411632 -4.235114255681105 -0.17977985565683763 NNTAAET(ph)EDDES(ph)DGEDRGGGTSGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 2 NNT(0.003)AAET(0.997)EDDES(1)DGEDRGGGTSGVR;NNTAAET(1)EDDES(1)DGEDRGGGTSGVR 138.84 2.568e-09 0.0 190866.0 232860.0 190070.0 205738.0 211290.0 291490.0 243020.0 253720.0 308000.0 239290.0 True False 189838.39866320606 240610.6043331572 216830.20388194371 231784.4097052076 238196.52908605337 271339.9823936535 231264.19417344587 272653.87476405443 232097.52698855297 224018.307333524 0.847423591950322 1.0740667010528304 0.9679128749023246 1.0346672665467525 1.0632904601471722 1.2112402134602143 1.0323450655715116 1.2171053250488166 1.0360649973263143 1.0 17.773257112166274 6.100733323675887 0.5381307332654313 1.1116395090341684 8.064512184355439e-14 0.39325951737351394 0.08007126397195882 14.458476001280303 1.0202303671673876 0.03789774452519862 13.91735582461153 1261052.9536304346 -6.100733323675887 -1.1116395090340878 NNTAAETEDDES(ph)DGEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNTAAETEDDESDGEDR 17 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 NNTAAETEDDES(1)DGEDR;NNTAAETEDDES(1)DGEDR 282.86 4.8215999999999994e-36 290790000.0 344050.0 304980.0 276600.0 279280.0 298880.0 327960.0 328270.0 279080.0 316470.0 290180.0 True False 342197.6730275481 315131.07493569655 315542.8757497007 314636.81936477625 336940.5963994487 305288.89713479916 312390.32598682056 299906.36673952517 238480.20898073845 271660.46396440326 1.259652096715802 1.1600181724529095 1.1615340382804011 1.1581987852527718 1.240300452566404 1.1237884699144236 1.1499292956657627 1.1039750222131075 0.877861303409934 1.0 18.05144509302273 1.432005494441576 3.230292194990242 0.9406961304020521 1.1759367865690853 0.7826909105002691 0.04951760010450383 0.0998778535771444 1.873350801065407 0.03622604944264063 0.012324006039651192 27.039925732361862 -1.432005494441576 0.23524065616703316 NNTAAETEDDES(ph)DGEDRGGGTSGSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNTAAETEDDESDGEDRGGGTSGSLR 26 1 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 1 NNTAAETEDDES(1)DGEDRGGGTSGSLR;NNTAAETEDDES(1)DGEDRGGGTSGSLR 278.5 6.0642999999999975e-61 1578730000.0 317693.0 289566.0 267810.0 289656.0 332203.0 304426.0 332435.0 292363.0 322732.0 327271.0 True False 315982.5761870107 299204.02926365647 305515.32015375025 326326.4199009016 374507.0829285538 283381.74716172204 316353.8490249755 314180.6116492323 243199.02298723964 306384.28458920063 1.0313276237737827 0.9765645443101906 0.9971638087227108 1.065088636443737 1.222344296903779 0.9249225936691879 1.032539411899478 1.0254462368084085 0.7937712057043669 1.0 18.22498277324443 1.3544473629097324 9.203177977083065 0.8974513737017498 1.034993745112055 0.29003314832685345 0.0861786082955842 0.3173307032830428 23.74956062002422 0.056394720824931285 0.02061262614451412 22.61764394192117 -1.3544473629097324 0.13754237141030523 NNTAAETEDDES(ph)DGEDRGGGTSGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 NNTAAETEDDES(1)DGEDRGGGTSGVR;NNTAAETEDDES(1)DGEDRGGGTSGVR 332.34 4.0561999999999975e-88 2126550000.0 410470.0 398730.0 365830.0 417020.0 384940.0 400830.0 491690.0 367580.0 451870.0 431650.0 True False 408260.0751275046 412001.4870126248 417335.6841486374 469814.6892419765 433959.8272818647 373121.5655523282 467905.0762617964 395010.68613341986 340512.69324778434 404101.72744584264 1.0102903486900319 1.0195489378793632 1.0327490723349317 1.1626148994993857 1.073887582774621 0.9233357350652098 1.1578893245995951 0.9775030872303283 0.8426410235858731 1.0 18.624358993174774 1.4992443057269733 6.9106958241585685 0.9173767540945529 1.052858551235815 0.344373457557112 0.07487914726955969 0.1254540330935065 14.081333892070505 0.04050811176878015 0.018352244460137803 31.56779922319842 -1.4992443057269733 0.13548179714126218 NNWEVSALSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NNWEVSALSR 10 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 115.82 0.0027266 250670000.0 349720.0 276060.0 246060.0 238470.0 257040.0 334560.0 317210.0 282040.0 449570.0 337700.0 False True 347837.1463775445 285248.4902182058 280703.10920813953 268660.2775491201 289772.5204045579 311432.65466952784 301865.3404401237 303087.25697010057 338779.49742936285 316147.69688048435 1.1002362181023255 0.9022633820610763 0.8878859848669269 0.8497935623130087 0.9165732449226183 0.9850859510998147 0.9548237846383555 0.9586888026094933 1.0715861629617822 1.0 18.270239184028725 1.3973991745620034 4.181551471449242 1.0348367202615185 0.9371536340785052 0.2314593644188867 0.06611016145082058 0.3039902745866763 8.610144124527176 0.04898003952098174 0.017089690053872172 24.968886463133593 -1.3973991745620034 -0.09768308618301336 NNWNDVDDFNWLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 NNWNDVDDFNWLAR 14 0 Q15814 Q15814 TBCC Tubulin-specific chaperone C 0 ;;; 280.17 6.893299999999998e-33 682060000.0 773320.0 724410.0 715310.0 725150.0 743070.0 831490.0 816490.0 788680.0 958670.0 831800.0 False True 769156.531043929 748521.5489349084 816019.4304140231 816953.9156486945 837695.5599790507 774011.053416924 776993.259405304 847535.3064358921 722418.6240198581 778713.8118601927 0.9877268379336521 0.9612280372256902 1.047906712306431 1.0491067491112733 1.0757425221185717 0.9939608642204063 0.9977905201773953 1.0883784177543976 0.9277074748348735 1.0 19.570733689667605 4.241984944590728 24.999666550048197 1.0292740591482963 0.9744774255427197 0.1422353081026526 0.0448945744217373 134.36518730741636 980901.2128133193 0.010627795134635536 0.026834728142525754 17457.61632668595 -4.241984944590728 -0.05479663360557663 NPDDITNEEYGEFYK ddPTM_BT-474_Trastuzumab_2h_R1 7 NPDDITNEEYGEFYK 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;;; 361.61 9.445199999999998e-83 9447620000.0 3553511.0 3441724.0 3233771.0 2931713.0 3059984.0 3791839.0 3735995.0 3570732.0 4786490.0 3836798.0 False True 3534379.2916081836 3556279.7027739105 3689057.8483585906 3302867.565204692 3449654.8244538675 3529718.094958898 3555270.648963142 3837198.153649701 3606923.6751800026 3591930.2667919695 0.9839777025417629 0.9900748173349425 1.027040497546565 0.919524411634682 0.9603902548851063 0.9826800168120651 0.9897938948960808 1.0682830313063916 1.00417419250219 1.0 21.776327911404916 1.9399166803507542 8.667578754639617 1.0312320588264476 0.9775007780164848 0.3110682450769604 0.0306852366745888 0.41278416027747333 56.326677603973316 0.013131012274452805 0.008302654873113385 87.07965111117787 -1.9399166803507542 -0.05373128080996281 NPDDITQEEYGEFYK ddPTM_BT-474_Trastuzumab_2h_R1 6 NPDDITQEEYGEFYK 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;; 309.49 9.458799999999999e-56 12015980000.0 8194730.0 7976440.0 7030430.0 6688200.0 7005500.0 9102000.0 8751440.0 8073010.0 11613310.0 9006350.0 False True 8150610.484200088 8241930.9835402 8020253.434406976 7534925.434243408 7897608.90014835 8472800.163803345 8328099.413452657 8675459.000114145 8751365.360881278 8431557.032275839 0.9666791617490942 0.9775099607332602 0.9512185476188562 0.893657648925324 0.9366726536885719 1.0048915201984199 0.9877297136902297 1.0289272748680527 1.0379299253247318 1.0 23.00736764358987 2.669703148312407 4.42110707863539 1.014074093383305 0.9443955064285738 0.6504555709619716 0.024485129549042313 0.15366098875759665 5.8828196900195575 0.008983081070599301 0.00853241355752518 467.4155412703544 -2.669703148312407 -0.06967858695473117 NPDELAEALDER ddPTM_BT-474_Trastuzumab_2h_R1 3 NPDELAEALDER 12 0 O14908;O14908-2;K7EM11 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 ;; 158.04 0.00017335 900665000.0 496790.0 557480.0 551500.0 515920.0 558270.0 560020.0 585140.0 503160.0 579630.0 540290.0 False True 494115.3378385581 576035.384796223 629146.4062760673 581235.4191015303 629362.3753744652 521307.1355452808 556834.5427481288 540708.3541947092 436787.9531440748 505808.2296344591 0.9768827569208368 1.1388414641108473 1.2438437522670263 1.1491221080400007 1.2442707304887015 1.030641861881177 1.1008807491142358 1.068998728204703 0.8635445758953659 1.0 18.948230984661045 1.4567442456512818 3.1330524860329936 0.933254841930532 1.132498121875103 0.4436023265820985 0.08469410168594801 0.21070442517001733 3.90721746743231 0.06433577456750303 0.02229111845837616 28.624917630739073 -1.4567442456512818 0.19924327994457092 NPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIER ddPTM_BT-474_Trastuzumab_2h_R1 1 NPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIER 35 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 75.248 0.00098816 107960000.0 39007.0 43459.0 48617.0 39412.0 45747.0 41603.0 50856.0 23128.0 44946.0 41900.0 False True 38796.99064608512 44905.50654347973 55461.85101346065 44401.55515899657 51572.60928628742 38727.08253292796 48395.90099121379 24853.928801604357 33869.66054554386 39225.90612760526 0.9890655048190642 1.144792076884043 1.4139087273863975 1.1319446646956854 1.3147589024079462 0.987283312384051 1.2337739460696648 0.6336100616962774 0.8634513230966018 1.0 15.2595191537206 1.7498453865369226 24.999999999999666 0.8058325425170123 1.1784336894946386 0.5202554775118386 0.1494887673114029 2.1249048294378574 4715.927634113828 0.06662307237131032 0.03694599139873313 56.214116131903886 -1.7498453865369226 0.37260114697762625 NPDTQWITKPVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NPDTQWITKPVHK 13 1 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 212.95 5.884199999999999e-09 6337600000.0 5213400.0 4739300.0 4418700.0 4001000.0 4491600.0 5640300.0 5302100.0 5215600.0 7186100.0 5725500.0 False True 5185331.633663188 4897044.735532652 5040814.55197109 4507526.189768232 5063578.636201038 5250399.336838053 5045617.167011066 5604814.556280158 5415181.943806627 5360093.688152837 0.9673957089824908 0.9136117800247334 0.9404340381423866 0.8409416797566441 0.9446809945491863 0.9795349936593019 0.94133003274983 1.0456560803532626 1.0102774799954615 1.0 22.353826786845325 2.221747066974404 1.3064395776757491 1.0202901028738156 0.9186792631613826 0.5183513077828605 0.03748155557077184 0.3331849380451291 1.1005288888648108 0.023531928229352732 0.01335360427616304 166.6276490785668 -2.221747066974404 -0.10161083971243301 NPDVDTSFLPDRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NPDVDTSFLPDRDR 14 1 Q14320;B0S8I6;Q9Y247 Q14320 FAM50A;FAM50B Protein FAM50A;Protein FAM50B 0 196.8 2.2194e-08 246200000.0 209310.0 215810.0 221590.0 193990.0 217060.0 241630.0 229400.0 211630.0 281910.0 237110.0 False True 208183.0982165273 222993.10539009987 252787.9459051927 218549.11410975736 244701.3043845839 224926.6868358385 218303.04560689873 227422.90523536527 212437.05790046448 221977.43679991612 0.9378570237486675 1.0045755487802088 1.138800184151366 0.9845555352851068 1.1023701683930625 1.0132862604345718 0.9834470059390343 1.0245316303942977 0.9570209520526581 1.0 17.760053513754542 2.4835684336616644 24.605002646072617 0.9965490304970774 1.037403152804479 0.11005363781050226 0.05550774024805354 562.23801718392 2145742.0616045506 0.018643240733878737 0.016122549273243497 304.48677452154755 -2.4835684336616644 0.040854122307401486 NPDVDTSFLPDRDREEEENR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPDVDTSFLPDRDREEEENR 20 2 Q14320;B0S8I6;Q9Y247 Q14320 FAM50A;FAM50B Protein FAM50A;Protein FAM50B 0 ; 292.97 9.1107e-55 1196710000.0 836170.0 889520.0 897780.0 835780.0 854180.0 1061950.0 1003080.0 881130.0 1065480.0 978260.0 False True 831668.1536272207 919127.1354738061 1024179.620356351 941589.6623055454 962954.7598784843 988539.8960614103 954557.1882622853 946884.3948874802 802906.7307005308 915826.6092694766 0.908106562104167 1.0036038767283275 1.1183117087778263 1.0281309286881488 1.0514596869451087 1.079396346487393 1.0422902966574674 1.0339122987950495 0.8767016841113427 1.0 19.804714957447196 1.2993421603537696 11.476775335006664 0.9384687121462288 1.037274810569125 0.2947550738751654 0.05837909902420205 0.6232099294954678 115.49469548329444 0.03836364541959468 0.014019282275706991 19.92242315586819 -1.2993421603537696 0.09880609842289612 NPDVDTSFLPDRDREEEENRLR ddPTM_BT-474_Trastuzumab_2h_R1 3 NPDVDTSFLPDRDREEEENRLR 22 3 Q14320;B0S8I6;Q9Y247 Q14320 FAM50A;FAM50B Protein FAM50A;Protein FAM50B 0 ;; 254.4 2.072e-37 1337130000.0 218327.0 303473.0 258551.0 342556.0 321134.0 279294.0 295571.0 277931.0 406879.0 286513.0 False True 217151.55169040983 313573.91535169753 294952.7334344211 385923.5544769416 362028.5113896572 259987.0631673575 281273.1015391312 298671.6225250216 306609.12234927155 268227.49504388 0.8095797623390005 1.169059552602537 1.0996364611546219 1.4387919270312217 1.349706939366645 0.9692781984368365 1.0486363506213896 1.1135011437815543 1.1430935605580352 1.0 18.033097604782576 2.7150394761648324 24.981992125117095 1.0655686318845219 1.1837673667275788 0.11474634969452258 0.1618794690018929 1905.8447287891393 2024210.806830339 0.05493248601561604 0.05181853320550471 518.8471985580419 -2.7150394761648324 0.11819873484305687 NPEDKSPQLSLS(ph)PRPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 NPEDKSPQLSLSPRPASPK 19 2 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 2 NPEDKS(0.062)PQLS(0.096)LS(0.842)PRPAS(1)PK 70.533 0.011458 386320000.0 304690.0 198800.0 179760.0 212130.0 191220.0 306050.0 333630.0 269370.0 560950.0 302200.0 True False 303049.58289424144 205416.93782286218 205068.64549807002 238985.63624982128 215570.73355026293 284893.4838642068 317491.04230963235 289471.75723314437 422711.38884489896 282913.3372735636 1.0711746070889796 0.7260772496711029 0.7248461577468103 0.8447308937532827 0.7619673771046587 1.0069991277531343 1.1222201306212503 1.0231817277431465 1.49413736700634 1.0 18.110000665186078 2.376772946593041 1.5594533459481765 1.1720077568500609 0.8127319949860968 0.4988483304439697 0.1569007718742443 0.3194814950343403 1.5702139228375434 0.07683020370123789 0.05333501127522704 238.10742949398306 -2.376772946593041 -0.35927576186396404 NPEFFEHR ddPTM_BT-474_Trastuzumab_2h_R1 6 NPEFFEHR 8 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ;;;;; 103.7 0.0047222 2692020000.0 1196450.0 1290200.0 1252740.0 1200220.0 1211860.0 1338820.0 1382180.0 1174630.0 1498050.0 1277350.0 False True 1190008.446138091 1333143.527057631 1429114.9029887223 1352167.7289386715 1366183.1877430284 1246270.5246432847 1315318.672959648 1262286.8552502834 1128875.6503415653 1195828.4294056466 0.9951330950791591 1.1148284271182891 1.1950835653731902 1.1307372326067955 1.1424575249662294 1.042181716036563 1.0999225646553583 1.0555752181587355 0.9440113837255413 1.0 20.189578984109815 1.4662496399104483 2.766627037425787 0.9723457123382794 1.107354656570507 0.479698973838369 0.05340213268244721 0.21741977739013757 3.197735499111588 0.04291399355201179 0.014543293473948218 29.25833713923708 -1.4662496399104483 0.13500894423222765 NPEHFVVCNR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPEHFVVCNR 10 0 Q2TAY7;Q2TAY7-2 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed 0 ; 110.66 0.0018564 1109210000.0 650210.0 797560.0 696460.0 690960.0 772360.0 876880.0 809930.0 714430.0 872470.0 710540.0 False True 646709.3416051216 824106.3024647979 794515.5142611585 778435.4651542752 870715.4678636197 816263.3495534897 770750.5916669371 767744.3944020321 657461.4589990363 665192.7288761005 0.9722134857032967 1.2388985427684924 1.1944140093105946 1.1702404902553698 1.3089672061430486 1.2271080457127603 1.158687637745508 1.154168350124935 0.9883773986974771 1.0 19.343412873260846 1.3106013785166415 2.950702069756547 0.9871117701520292 1.1891822195015793 0.44378727220049063 0.08206089763408696 0.22240796702160265 3.1885853211301374 0.06913101627006311 0.0208162872083256 20.44567149052199 -1.3106013785166415 0.2020704493495501 NPEISHLLNNPDIMR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPEISHLLNNPDIMR 15 0 Q9UHD9 Q9UHD9 UBQLN2 Ubiquilin-2 0 ; 137.61 1.5639e-05 616930000.0 503170.0 509310.0 481410.0 510360.0 469360.0 589210.0 609770.0 480740.0 736810.0 602880.0 False True 500460.98862744286 526262.075465603 549188.3435092679 574971.5236716103 529130.2138853228 548479.2995511492 580273.0955523922 516615.259948257 555233.0482481683 564403.6822484635 0.8867075186924958 0.9324214069069988 0.9730417443795176 1.018723905877167 0.937503121484575 0.971785473415278 1.0281171328307221 0.9153293576862793 0.9837516403795217 1.0 19.106367874746667 4.507321953441596 2.4954871268731167 0.9748088344877465 0.885136150502063 0.44834887845149274 0.032350237415160195 0.3272496457564689 3.458214889090876 0.008155737742048672 0.049871022285957814 32160.437894394014 -4.507321953441596 -0.08967268398568351 NPEISHMLNNPDIMR ddPTM_BT-474_Trastuzumab_2h_R1 4 NPEISHMLNNPDIMR 15 0 Q9UMX0;Q9UMX0-2 Q9UMX0 UBQLN1 Ubiquilin-1 0 ;;; 268.2 1.4286e-25 1828240000.0 1076500.0 1141070.0 1076510.0 1134890.0 1033500.0 1153600.0 1189830.0 972670.0 1360790.0 1171490.0 False True 1070704.243610395 1179049.8251586196 1228073.2508073393 1278566.9576371065 1165110.0989655731 1073854.3472823028 1132273.3773080036 1045255.5745181818 1025441.5381517952 1096724.5052369514 0.9762745689529981 1.0750647218408615 1.1197645761931887 1.1658050417692338 1.0623543956591421 0.9791468524269844 1.032413675359038 0.953070319416589 0.9350037618884468 1.0 20.064769738780722 2.8046020857077583 3.969408306940378 0.9789220746364506 1.0887926017464016 0.4929275639095819 0.05080300858608337 0.19961559065964057 6.253738726005195 0.016973047027068183 0.017792979369932346 637.6789568909397 -2.8046020857077583 0.10987052710995093 NPEVGLKPVWYSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 NPEVGLKPVWYSPK 14 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 174.52 2.3055e-06 1857420000.0 1961980.0 1792450.0 1804410.0 1546440.0 1588100.0 2238520.0 2037580.0 2026640.0 2944900.0 2172760.0 False True 1951416.9176764681 1852110.6146910938 2058455.2437871222 1742219.1454399347 1790335.121593834 2083776.381309279 1939014.4710885105 2177878.167869398 2219168.854638281 2034092.5966065757 0.9593550072066369 0.9105340719399512 1.0119771573925347 0.8565092603682025 0.880164022316685 1.0244255275229799 0.9532577200877278 1.0706878199658638 1.090987135168017 1.0 20.95595392483445 2.10385983340134 1.4978033128356245 1.0583870238925774 0.9288564574146349 0.47097203527449005 0.053914424031918165 0.33424147035569196 1.4244016335373162 0.03347853618516428 0.017554717193548633 127.01640992748301 -2.10385983340134 -0.1295305664779426 NPEYDYLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NPEYDYLFK 9 0 Q9H0U4;E9PLD0 Q9H0U4 RAB1B Ras-related protein Rab-1B 0 ; 110.14 0.0054346 226140000.0 312360.0 319190.0 302100.0 263810.0 308370.0 352650.0 321930.0 314470.0 404270.0 340000.0 False True 310678.2884664584 329814.04619557026 344633.0540997279 297208.3189509512 347639.091647812 328272.1355488079 306357.01600797276 337937.3482463043 304643.07544046245 318300.9089113553 0.9760521562097714 1.0361706076290889 1.0827272070269391 0.9337338054341584 1.0921712188532493 1.0313264158483113 0.9624760955153011 1.0616914334367096 0.9570914405566574 1.0 18.280031751046312 1.2245606801256574 24.99979908410088 0.9785457262013286 1.023169608994249 0.10826574601822014 0.0498506956068921 567.1833642451953 1012794.0456100256 0.04341143777826678 0.011069735478585793 16.771066466531217 -1.2245606801256574 0.0446238827929204 NPFDTFFGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPFDTFFGQR 10 0 P25685;P25685-2;M0R080;M0QZD0;M0QYT3;M0QXK0;M0R128;A0A1B0GX60;M0R1D6 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 ; 151.83 4.4466e-05 637700000.0 132388.0 118216.0 120924.0 127460.0 136649.0 118551.0 150199.0 120472.0 151279.0 142005.0 False True 131675.23771768968 122150.74809691893 137949.04810974983 143596.42293123162 154050.4401679212 110355.84840903632 142933.30055410013 129462.23238442073 113998.31748474472 132942.11932340285 0.9904704271892095 0.9188265443532445 1.0376624715464844 1.0801424233497472 1.1587782784865117 0.8301044768255738 1.075154370048759 0.9738240449551075 0.8575033861723363 1.0 17.02043873264012 1.4681343713139137 8.160640367025257 0.9242177009972355 1.0120610627515718 0.12014241170590745 0.09124922808967703 0.2359319695621415 50.28955803960312 0.0505357097655802 0.022647969533387942 29.38558705454517 -1.4681343713139137 0.08784336175433627 NPGFEIIHGLLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NPGFEIIHGLLDR 13 0 Q9NSD9;Q9NSD9-2 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit 0 179.65 1.3568e-05 462390000.0 398800.0 474740.0 424590.0 417750.0 436280.0 462910.0 450770.0 408010.0 547210.0 408830.0 False True 396652.90511084546 490541.43391360977 484368.5813975609 470637.107167128 491837.671965844 430910.1212729297 428964.5329913766 438457.77803279983 412357.4277383313 382738.1193830278 1.0363558919875768 1.2816633856704958 1.2655352494764853 1.22965830507239 1.2850501349556827 1.1258615211036596 1.120778180346566 1.1455816806008032 1.077387923635748 1.0 18.545998069998035 1.454272599246062 0.6843941032458885 1.0065888645751493 1.2218183871937822 0.4550459246521411 0.07268672707118573 0.5602500855925301 0.5843690945860464 0.06793204833241233 0.03084688079904643 28.462470876724602 -1.454272599246062 0.21522952261863293 NPHLITNWGPAAFTEAELEER ddPTM_BT-474_Trastuzumab_2h_R1 2 NPHLITNWGPAAFTEAELEER 21 0 Q9UH65;E7EMB1 Q9UH65 SWAP70 Switch-associated protein 70 0 ; 271.54 1.1564999999999996e-44 296730000.0 82908.0 82879.0 87222.0 89840.0 85876.0 103294.0 96218.0 89394.0 111753.0 92564.0 False True 82461.63253994481 85637.57741358643 99502.09945278535 101213.73478849737 96811.79957306969 96153.52890792166 91563.56775154575 96065.03421353425 84212.97056347982 86656.4862719725 0.9515921552731541 0.9882419781574318 1.148236026331563 1.1679879850059551 1.1171904578409122 1.1095941347788159 1.0566268226497473 1.1085729221934166 0.9718022757024364 1.0 16.403020119265946 1.2352659075232955 24.989005593219225 0.985901090812732 1.085099304056033 0.2569969015593929 0.06438274229103592 123.86282400362848 939370.5293007945 0.05739476751107251 0.01665566440982042 17.189605410694234 -1.2352659075232955 0.09919821324330103 NPHPSSAFLNLIGFVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPHPSSAFLNLIGFVSR 17 0 P53004;C9J1E1 P53004 BLVRA Biliverdin reductase A 0 ; 221.79 3.5707999999999996e-15 1557450000.0 806130.0 1415790.0 1586270.0 1647060.0 1709300.0 1857710.0 1682930.0 1579020.0 1680190.0 1764510.0 False True 801789.8856494636 1462913.7142868724 1809603.0278939914 1855577.6271231316 1926969.2231851516 1729290.8802789622 1601520.2464830764 1696854.4905010937 1266129.6878925224 1651897.4611269857 0.48537509410690227 0.8855959578077071 1.0954693438776841 1.1233007319093449 1.1665186662799891 1.0468512247117179 0.9695034251039165 1.0272153874148076 0.7664699036638277 1.0 20.655692705890957 4.688172237713715 2.7816542287855452 1.0308452100225103 0.4157747557256235 0.7092749155886862 0.10365421141783208 0.2002996201662789 2.2751056226778545 0.02639461243936275 0.264981450226426 48772.187834403754 -4.688172237713715 -0.6150704542968868 down NPHQALLHTANRPEDECVGEGLACHQLCAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPHQALLHTANRPEDECVGEGLACHQLCAR 30 1 P04626-5;P04626-4;P04626;B4DTR1;J3QLU9;P04626-6;F5H1T4 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 ; 284.13 2.9683999999999997e-72 1572890000.0 156261.0 233459.0 268240.0 217347.0 287920.0 345570.0 243100.0 144214.0 318610.0 238460.0 False True 155419.70813822918 241229.54168605426 306005.8604161236 244863.10791491013 324584.9053644583 321681.5592842801 231340.3242678164 154975.9809838536 240092.83465526946 223241.27864412285 0.6961961026302375 1.0805776743046127 1.3707404933114489 1.096854082731068 1.4539645505340928 1.4409591328182838 1.0362793371946437 0.6942084453427027 1.075485842553385 1.0 17.768244289189152 2.00159803838139 24.999999911149633 0.8832518957698886 1.2040521625253207 0.212948680918707 0.22745168833973753 66.6434067334156 1042567.9922816075 0.0883210292143454 0.0647580633983855 100.36863974653922 -2.00159803838139 0.32080026675543205 NPISGLLEYAQFASQTCEFNMIEQSGPPHEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 NPISGLLEYAQFASQTCEFNMIEQSGPPHEPR 32 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ;; 272.0 2.3399e-73 401777000.0 286960.2 313921.0 286869.4 329486.6 290823.8 347950.6 325663.5 298591.6 385056.8 348504.3 False True 285415.23816747556 324369.6707157485 327258.1180064759 371199.5697769774 327858.4870822876 323897.5940096096 309909.9123496172 320874.0214094225 290164.7111367728 326262.45720445755 0.8748025764687218 0.9941985771059068 1.003051717352188 1.1377330170242643 1.0048918588166884 0.9927516539441559 0.9498791709136404 0.9834843523180533 0.8893597921839241 1.0 18.315673461495553 2.393091318606286 3.312475260757743 0.9571119433902844 1.00938419211965 0.10255966464350674 0.06488059165958422 0.565116293877158 12.462106343735483 0.02489704973207589 0.020422345832023275 247.22439262831531 -2.393091318606286 0.052272248729365645 NPLPNIDHELQELLIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 NPLPNIDHELQELLIDR 17 0 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 0 ;;; 237.59 3.1931e-20 212581000.0 132442.0 149050.0 149348.0 138067.0 144010.0 159844.0 150206.0 150845.0 201122.0 168975.0 False True 131728.94698768936 154011.0391473722 170374.90024391309 155546.26804367173 162348.81988585595 148794.36051230287 142939.96193735756 162101.81987538942 151558.17799672647 158190.8708332241 0.8327215489354455 0.9735772888546865 1.0770210654161847 0.9832822034822699 1.026284380576016 0.9406001732500248 0.9035917255178074 1.0247229756152523 0.9580715827559337 1.0 17.27130681897783 4.727651968699565 4.954087811094384 0.988997612017451 0.8259462976458005 0.5058755667758098 0.04605615199079816 0.13037732018818352 9.716425475220156 0.011223224196086316 0.07163352268426335 53413.61462577858 -4.727651968699565 -0.16305131437165044 NPLPPILGS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 1 NPLPPILGSPTK 12 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 NPLPPILGS(0.942)PT(0.058)K 106.76 0.0019799 1445800000.0 1431000.0 1119300.0 998620.0 941430.0 1085500.0 1366300.0 1380900.0 1279500.0 1864300.0 1217600.0 True False 1423295.6549990473 1156555.2238688609 1139217.0158393565 1060614.9414730072 1223731.9907374245 1271850.8969242475 1314100.5914497233 1374982.7871693522 1404868.2453401282 1139891.7255601948 1.2486235517672302 1.0146184922085268 0.9994080931498062 0.9304523558601784 1.0735510779640292 1.115764654137832 1.152829309997767 1.2062398176402438 1.2324576219287071 1.0 20.120465363524794 2.572166116270014 2.287367976633805 1.168675456762938 1.0403297284975253 0.1641884696298439 0.09621004843534599 0.42008655814088014 4.360738560054292 0.0360487636807219 0.032104886210966334 373.3929521116806 -2.572166116270014 -0.1283457282654128 NPLPSKETIEQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 NPLPSKETIEQEK 13 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 ;;; 148.52 3.6792e-05 5282430000.0 2482430.0 2323910.0 2283640.0 2476330.0 2256850.0 2972000.0 3287040.0 2711860.0 4823870.0 3061420.0 False True 2469064.872703904 2401259.9395167395 2605156.6622452918 2789833.1240961617 2544246.4701020387 2766552.6353354794 3128033.3174877977 2914232.7637460576 3635091.87504634 2866037.5545864706 0.8614907605633785 0.8378326849465194 0.908975061431524 0.9734112240196015 0.8877226559821328 0.965288340659812 1.0914139322710756 1.0168159726596957 1.268333650837605 1.0 21.45062608313243 2.3751648210811656 1.0308651493838392 1.1122159535779188 0.8824470303895885 0.6058540894439166 0.07569413050600374 0.35439415224262155 0.7419066711611633 0.048505644111369914 0.031026143268559788 237.22738473184637 -2.3751648210811656 -0.2297689231883303 NPPGFAFVEFEDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 NPPGFAFVEFEDPR 14 0 P84103;P84103-2;A0A087X2D0;Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 P84103;Q16629 SRSF3;SRSF7 Serine/arginine-rich splicing factor 3;Serine/arginine-rich splicing factor 7 0 ;; 123.95 0.00023246 3275970000.0 1214150.0 1245640.0 1211390.0 1151840.0 1193720.0 1327030.0 1244180.0 1213370.0 1538370.0 1330590.0 False True 1207613.1513047463 1287100.3743947179 1381943.1824093643 1297662.8258991828 1345733.166267232 1235295.5395926093 1183994.2601708435 1303917.830768015 1159259.3266018853 1245670.607024587 0.9694482188909114 1.0332590069449339 1.1093969582458707 1.0417383364281065 1.0803282654968112 0.9916710987852884 0.9504874350362461 1.0467597319989412 0.9306307141427187 1.0 20.24849119592283 2.6893917584441525 11.283702965853873 0.9889301591929891 1.049264841434601 0.33187118562392526 0.044289076329509576 1.2999862260191977 296.2966993789646 0.01437244686220782 0.013557864674495938 489.0933505689247 -2.6893917584441525 0.06033468224161198 NPPGFAFVEFEDPRDAADAVR ddPTM_BT-474_Trastuzumab_2h_R1 4 NPPGFAFVEFEDPRDAADAVR 21 1 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 ;;; 129.2 1.5411e-05 2006850000.0 239619.0 392656.0 397567.0 599512.0 451527.0 408621.0 474631.0 410050.0 701096.0 520813.0 False True 238328.91792817353 405725.31759443594 453540.97788568825 675410.1577306496 509026.2870397952 380373.99206036946 451671.2852635046 440650.0131917101 528320.2850050871 487574.268449558 0.48880536433154664 0.8321302903957702 0.9301987558283324 1.3852456978059828 1.0439974378845969 0.7801354925269627 0.9263640731078331 0.9037597791879732 1.083568841081581 1.0 18.89526246471042 4.657888285423605 2.1550028569910866 1.0000131990175618 0.4047111297920952 0.528875652875676 0.14968373767423965 0.4656544138957982 2.7990442163760902 0.041041095700880326 0.49962308999760985 45487.10375681875 -4.657888285423605 -0.5953020692254666 NPPGFAFVEFEDPRDAEDAVR ddPTM_BT-474_Trastuzumab_2h_R1 7 NPPGFAFVEFEDPRDAEDAVR 21 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ;;;;;; 190.67 1.5675e-17 5275972000.0 738344.1 910095.6 909846.5 1050325.0 1041554.3 971700.0 1089348.6 913797.9 1282848.0 1006992.0 False True 734368.9374033418 940387.5818815922 1037944.9786724509 1183296.0373077507 1174190.0663289973 904528.6661357615 1036652.64650223 981990.1394697146 966707.2996825057 942724.9084307735 0.7789853973687257 0.9975206695736172 1.1010051494238944 1.2551869869201009 1.245527784222348 0.959483151496875 1.0996343018323396 1.041650783476487 1.0254394373557525 1.0 19.846477321538856 4.6653034659301245 2.489550169866495 1.0959383656848427 0.736618077785716 0.5151873473634903 0.09157275763226756 0.36009724172995994 3.1283548248942097 0.024292711414767326 0.25515934722428146 46270.42258783464 -4.6653034659301245 -0.35932028789912673 NPPPNSDPNLRR ddPTM_BT-474_Trastuzumab_2h_R1 4 NPPPNSDPNLRR 12 1 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 ;;; 142.12 9.7956e-05 505579000.0 106736.0 117006.0 122183.0 127034.0 134357.0 122522.0 131076.0 115912.0 153502.0 122425.0 False True 106161.34523548448 120900.47397837944 139385.30436632558 143116.49137491063 151466.56755366948 114052.34252576501 124735.35312105421 124561.9420292097 115673.48892141852 114611.73168668419 0.9262694461828684 1.0548699701081812 1.21615215401653 1.248707172195516 1.3215625078219384 0.9951192678734809 1.088329713593763 1.0868166826911452 1.0092639489789481 1.0 16.806395200730012 NPPS(ph)PRPSQLPVLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 NPPSPRPSQLPVLDR 15 1 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 NPPS(1)PRPSQLPVLDR;NPPS(1)PRPSQLPVLDR;NPPS(0.999)PRPS(0.001)QLPVLDR;NPPS(1)PRPSQLPVLDR;NPPS(0.997)PRPS(0.003)QLPVLDR;NPPS(1)PRPSQLPVLDR 118.54 0.00017141 4079630000.0 2132800.0 2375100.0 2279150.0 2506160.0 2417330.0 2616690.0 2480070.0 2390340.0 3203080.0 2628790.0 True False 2121317.241776354 2454153.76772173 2600034.509273071 2823439.5990376235 2725162.646862556 2435804.3793257014 2360099.5393125582 2568719.3087005774 2413723.8530730363 2461018.3715796494 0.8619672515547895 0.9972106653338336 1.056487240931969 1.147264738712758 1.1073312894910903 0.9897546509424211 0.9589930601768265 1.0437627521861197 0.9807825414662564 1.0 21.23082399692436 4.700767324274743 2.977572508618767 1.037867395801668 0.8405213404455575 0.4691354615915604 0.055234172885878154 0.3224798338411582 4.368748939289696 0.014850555285759567 0.1445389395226273 50207.352872041956 -4.700767324274743 -0.1973460553561105 NPQMPQYSSPQPGSALS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 NPQMPQYSSPQPGSALSPR 19 0 O14497;H0Y488;A0A1B0GTU5;O14497-3;O14497-2;A0A087WUV6 O14497 ARID1A AT-rich interactive domain-containing protein 1A 1 NPQMPQYSSPQPGS(0.02)ALS(0.98)PR;NPQMPQYSSPQPGSALS(1)PR;NPQMPQYSSPQPGSALS(1)PR 329.73 3.2737999999999987e-75 1102800000.0 202331.0 182641.0 162900.0 180326.0 136249.0 199631.0 199618.0 147117.0 187154.0 192726.0 True False 201241.67237708715 188720.09527618412 185834.9040478174 203155.25311075876 153599.50253890696 185830.97885082642 189961.7147251869 158095.61758498917 141032.4044351158 180426.0616789699 1.115369201679712 1.045969155010276 1.029978165673601 1.1259751014918822 0.8513154979362397 1.0299564105183066 1.052850752033726 0.8762349303300038 0.7816631539963068 1.0 17.461048218459013 2.8969674164748374 0.585067157780713 0.8968945728159972 1.091746661814804 0.3371523610911582 0.08924398454345199 1.0473517587140035 0.7705098003934202 0.07093920568205696 0.09495389180498291 788.8009345518687 -2.8969674164748374 0.1948520889988068 NPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEK 39 0 Q01081-2 Q01081-2 U2AF1 Splicing factor U2AF 35 kDa subunit 0 ; 288.52 2.5448999999999996e-78 149046000.0 52364.0 47360.0 42386.0 42853.0 46016.0 52345.0 50834.0 42310.0 77625.0 54637.0 False True 52082.07804218732 48936.34897027545 48353.5803742835 48278.18540618289 51875.86484179951 48726.513356876014 48374.965215261946 45467.38704582668 58495.35887170918 51150.019882910914 1.018222048816599 0.9567219931154897 0.9453286721094375 0.9438546752610845 1.0141905117642211 0.9526196366769236 0.9457467529044674 0.8889026270157369 1.1436038344777324 1.0 15.642447180321058 1.2402459591298745 24.99999999807444 1.0718019085155495 0.9550453238823151 0.477699434296866 0.04742380875532232 34.255241810477415 508203.1417354913 0.0351043671998677 0.01129915332212882 17.387852967902408 -1.2402459591298745 -0.11675658463323435 NPRPGEENGKDYYFVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPRPGEENGKDYYFVTR 17 2 B1ANH0;B1ANG9;Q16774;Q16774-2;B1ANH2;Q16774-3;B1ANH6 B1ANH0 GUK1 Guanylate kinase 0 ; 203.56 5.3882e-12 1183820000.0 623860.0 647530.0 649000.0 611190.0 631290.0 816640.0 906100.0 706640.0 944870.0 743550.0 False True 620501.207077362 669082.6446098483 740373.5587908737 688566.5913332779 711681.0395510183 760187.598963783 862268.4813618606 759373.0650452134 712019.4491093328 696096.0024148176 0.8914017677515592 0.9611930571196249 1.063608404907446 0.9891833726161053 1.022389206491827 1.0920729271919765 1.2387206338932795 1.0909027812412113 1.0228753600642373 1.0 19.40892676421273 2.8804794312516777 2.6988563744575287 1.1069833885647824 0.9820376893301987 0.34140542697267506 0.07183428567217538 0.3012144013298736 4.267403689033966 0.024265330733138808 0.026311335737164977 759.4154549180636 -2.8804794312516777 -0.12494569923458365 NPS(ph)PDHSYK ddPTM_BT-474_Trastuzumab_2h_R1 2 NPSPDHSYK 9 0 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 NPS(1)PDHSYK;NPS(1)PDHSYK 101.53 0.0025244 720010000.0 905010.0 697010.0 588320.0 578580.0 622100.0 859500.0 748930.0 777220.0 1051290.0 739560.0 True False 900137.5267160631 720209.5564985572 671150.3422308889 651828.1686768556 701320.7475244156 800084.7880453705 712701.394709567 835220.1030431916 792213.6660642726 692360.6476308287 1.3000992037837809 1.0402231249898792 0.969365235484543 0.941457563926156 1.0129413766138315 1.1555896349441008 1.029378831896847 1.206336763796744 1.1442211061173515 1.0 19.40116420162365 2.741602445553505 24.889966803443127 1.1203605092243902 1.041294746446452 0.04825778296286054 0.1071880512421037 602.097226327979 4926729.64073978 0.034004907316706266 0.03467749585825707 551.5722972080875 -2.741602445553505 -0.07906576277793831 NPS(ph)PTTRPVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NPSPTTRPVSR 11 1 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-2;Q9ULV3;A0A494C0L7;Q9ULV3-3;Q9ULV3-4;A0A0U1RQR2 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 NPS(0.996)PT(0.004)TRPVSR 133.48 9.7353e-05 1177800000.0 136140.0 142630.0 118940.0 171130.0 139610.0 180750.0 165760.0 168260.0 175850.0 210960.0 True False 135407.0373665758 147377.35332834424 135685.71815498697 192795.04045364566 157388.50596669922 168255.1779397335 157741.55553530753 180816.4156069676 132514.12376927637 197496.35218805727 0.6856179158065683 0.7462282300181959 0.6870289838355403 0.9761954502838869 0.7969185467123611 0.8519406868817498 0.7987061724821379 0.9155430649918692 0.670969981476395 1.0 17.591466480998445 7.9999999998937925 0.049842428157172436 1.2571549309129775 3.878414803560592e-12 0.29517702979303273 0.09602412108752093 625.6111028747827 2.352886678722835 13.998122150472431 60.56292367717616 99999999.97554483 -7.9999999998937925 -1.257154930909099 NPSDSAVHS(ph)PFTK ddPTM_BT-474_Trastuzumab_2h_R1 7 NPSDSAVHSPFTK 13 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 NPSDSAVHS(1)PFTK;NPSDSAVHS(1)PFTK;NPSDSAVHS(0.999)PFT(0.001)K;NPSDSAVHS(1)PFTK;NPSDSAVHS(1)PFTK;NPSDSAVHS(0.999)PFT(0.001)K;NPSDSAVHS(1)PFTK 213.49 5.7773e-09 5093170000.0 5284840.0 4976960.0 4496280.0 4113890.0 4592320.0 5718870.0 5083030.0 4496070.0 6245980.0 4783400.0 True False 5256387.008640917 5142615.1049641445 5129317.141633645 4634708.052193358 5177124.731186826 5323537.977671933 4837144.419839735 4831589.573980858 4706741.920844037 4478119.316725227 1.173793424621125 1.1483872450108927 1.1454177030246322 1.0349675219423677 1.1560935216377328 1.1887887751872022 1.0801731882787475 1.0789327465964256 1.0510532632002307 1.0 22.094461537745705 1.4070758541340678 1.0618601140401929 1.0052645965978346 1.1368005490256896 0.5495759097596509 0.04137683602899842 0.37108004629161273 0.8335796154240461 0.03925151260333045 0.013750346758334578 25.531471979372036 -1.4070758541340678 0.13153595242785499 NPSDSAVHS(ph)PFTKR ddPTM_BT-474_Trastuzumab_2h_R1 3 NPSDSAVHSPFTKR 14 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 NPSDSAVHS(0.999)PFT(0.001)KR;NPSDSAVHS(1)PFTKR;NPSDSAVHS(1)PFTKR 214.24 3.2675e-12 1333740000.0 893630.0 1072870.0 994450.0 1085230.0 1027100.0 1160590.0 1168290.0 992300.0 1420430.0 1105000.0 True False 888818.7953716276 1108579.8293863889 1134459.916085647 1222620.0067288599 1157895.0969013455 1080361.1450349928 1111775.349398795 1066350.4647973005 1070384.0592868517 1034477.9539619038 0.8591954927290404 1.071632145606086 1.0966496789427231 1.1818714957108547 1.1193037922816735 1.0443539573727627 1.0747211626316957 1.030810236905803 1.0347093963553622 1.0 19.980471469187403 1.438512530607006 1.3137243120697741 1.006863659183919 1.0724176369420135 0.05382795502881199 0.0784052680364497 1.1737046526380022 3.871954316970881 0.07271939796558327 0.024127988839323242 27.448115378039063 -1.438512530607006 0.06555397775809446 NPSDSAVHSPFTK ddPTM_BT-474_Trastuzumab_2h_R1 2 NPSDSAVHSPFTK 13 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 ; 90.229 0.0046862 219740000.0 1511370.0 1472240.0 1394020.0 1485720.0 1473080.0 1773550.0 1764950.0 1575570.0 2401200.0 1707730.0 False True 1503232.9518489935 1521242.6184121256 1590285.8989609468 1673811.9996656952 1660668.0063707868 1650948.662987631 1679572.6257362496 1693147.033982349 1809456.4344315368 1598741.2093387917 0.940260339239458 0.9515252434390442 0.9947112701364959 1.0469561864599408 1.038734722461809 1.0326553499364861 1.0505594125711493 1.0590500977219457 1.13180070912158 1.0 20.608504995809852 4.109951675144544 0.9188686691341448 1.0589387181353191 0.9155726524980343 0.6497383072487173 0.031355080701595685 0.572238230540273 0.6950418960855045 0.010858473145777422 0.06801402844562211 12881.062134456866 -4.109951675144544 -0.14336606563728482 NPSVSLVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 NPSVSLVEER 10 0 O43916 O43916 CHST1 Carbohydrate sulfotransferase 1 0 67.726 0.062111 435060000.0 72764.0 218800.0 207340.0 286910.0 250330.0 119710.0 127800.0 94800.0 35426.0 106520.0 False True 72372.24670884042 226082.6257326069 236531.66976841283 323232.7765824549 282208.0416778438 111434.72946702901 121617.82575658975 101874.4573846461 26695.736984079504 99721.80240363978 0.7257414623925699 2.2671333678617405 2.3719153090616376 3.241345110010337 2.8299532787781154 1.1174560304874885 1.219571074982403 1.0215866032213607 0.2677021106781071 1.0 16.6056213383445 2.643401945522228 5.660863768715142 0.9409515231971143 2.3407363093404516 0.523635560988009 0.6496170470617184 0.19551531576301293 9.377512108089265 0.22300498039689426 0.20992205350692317 439.94860556281003 -2.643401945522228 1.3997847861433375 NPTDAYQLNYDMHNPFDICAASYRPIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPTDAYQLNYDMHNPFDICAASYRPIYR 28 1 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 281.68 5.0050999999999975e-62 2237700000.0 685970.0 682660.0 687020.0 662370.0 803390.0 761790.0 637110.0 628520.0 782890.0 752930.0 False True 682276.8137384315 705381.925423315 783746.4443151101 746225.9740856733 905696.9544343993 709129.2503607714 606290.5553034494 675423.3539598912 589957.2496885338 704877.3627841956 0.9679369061357084 1.0007158162054268 1.111890501376565 1.0586607167212108 1.2849000439693314 1.0060320955120212 0.860136226972394 0.9582139952573254 0.8369643867668857 1.0 19.42701274826954 2.474858047048124 20.78620712474202 0.9161068263046195 1.0867255016265103 0.44679251301788936 0.08967149324104122 8.068494689418888 74086.51688894241 0.031233653760127395 0.02638721801972067 298.44069799409465 -2.474858047048124 0.1706186753218908 NPVDYMDLPFS(ph)SSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NPVDYMDLPFSSSPSR 16 0 Q9BX66-6;Q9BX66-5;A0A0U1RQI5;Q9BX66-4;Q9BX66-9;Q9BX66-8;Q9BX66-10;Q9BX66-2;Q9BX66;Q9BX66-12;A0A3B3IT56;Q9BX66-3;Q9BX66-11 Q9BX66-6 SORBS1 Sorbin and SH3 domain-containing protein 1 1 NPVDYMDLPFS(0.324)S(0.324)S(0.324)PS(0.029)R 66.436 0.05724600000000001 23045000.0 35854.0 47617.0 46924.0 50447.0 45967.0 53084.0 60772.0 47761.0 52003.0 59413.0 True False 35660.96604775387 49201.903059915676 53530.49132928038 56833.58502755254 51820.62498224532 49414.42802629494 57832.22618841522 51325.168345443846 39187.55745449913 55621.21147397161 0.6411396857913046 0.8845888422070796 0.9624114597779014 1.0217969641698341 0.9316701957578754 0.8884097759973965 1.0397512865299288 0.9227625034643818 0.7045434001889236 1.0 15.76334754761515 4.725688095752554 3.116131405154457 0.9371267331768639 0.6004150506929832 0.49075650612941346 0.08894840832047483 0.27813715030025415 4.207102445878662 0.021381581521970526 0.22617923246395455 53172.62437224735 -4.725688095752554 -0.3367116824838807 NPVWYQALTHGLNEEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPVWYQALTHGLNEEQR 17 0 O95373 O95373 IPO7 Importin-7 0 ; 162.77 2.8012e-09 1936410000.0 1750670.0 1837780.0 1920320.0 1937630.0 1919320.0 2601600.0 2471000.0 2081000.0 3185200.0 2391300.0 False True 1741244.5872377206 1898949.3963385301 2190684.3642793396 2182933.759330319 2163734.025299083 2421757.515507667 2351468.289863325 2236294.7871038825 2400250.1394933094 2238685.186705067 0.7777978777804452 0.8482431596974269 0.9785584758809364 0.9750963522223489 0.9665200083285055 1.0817767187140988 1.050379170697178 0.9989322305720428 1.0721695724560703 1.0 21.094220233954065 4.787462967235096 0.7316336402837071 1.0343883355265342 0.5869587964753537 0.8588899373417522 0.034174203061316466 1.0185935840535396 0.39488121380118774 0.013159117725314176 0.3829951652826231 61300.351844145946 -4.787462967235096 -0.44742953905118055 NPWGEVEWTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 NPWGEVEWTGR 11 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 ;;; 146.71 8.2921e-05 1213260000.0 326437.0 356185.0 342828.0 317370.0 354223.0 364451.0 367832.0 330013.0 389770.0 373850.0 False True 324679.49946256 368040.40240662056 391095.20248560497 357549.009459321 399331.1994057878 339257.36019537353 350038.5609053042 354640.24583205907 293716.4061504171 349990.5729309122 0.9276806993502977 1.0515723304332296 1.11744496204704 1.0215961146184953 1.140977015642691 0.9693328518946783 1.000137112191309 1.0132851375458753 0.8392123356088121 1.0 18.416956537725884 1.4038679120044746 6.0344541070013795 0.9187034639910088 1.0350206118005556 0.28870695057027784 0.06971749481819008 0.2406440748409091 13.527852110595617 0.04590123636524156 0.016925928226038837 25.34357703959576 -1.4038679120044746 0.11631714780954683 NPYYGGESASITPLEDLYKR ddPTM_BT-474_Trastuzumab_2h_R1 2 NPYYGGESASITPLEDLYKR 20 1 P50395;P50395-2;Q5SX87;V9GYF8;Q5SX90;V9GYJ7 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ; 247.35 6.446799999999997e-30 1188120000.0 556270.0 557120.0 515560.0 545500.0 462110.0 641860.0 700370.0 600170.0 959600.0 683340.0 False True 553275.1041274077 575663.4024138484 588146.3666721463 614560.2440686254 520956.9693594394 597489.7289759186 666490.4274267812 644957.7330015084 723119.437981219 639728.6561631918 0.8648590285851909 0.8998555823126976 0.9193684869450539 0.9606576759504329 0.8143405244403272 0.9339736827788777 1.0418330037364507 1.0081738980862267 1.13035336312456 1.0 19.287100583585172 2.3141890772966573 3.918980768786423 1.0425727739944506 0.8957193086116931 0.6927426644704529 0.04825394003838542 0.12845067544010574 3.851340103561486 0.017430917133651525 0.013995336089382554 206.15272379548819 -2.3141890772966573 -0.14685346538275745 NQALNTDNYGHDLASVQALQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQALNTDNYGHDLASVQALQR 21 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 289.22 1.1154999999999994e-54 1496450000.0 687370.0 705290.0 769600.0 792120.0 798390.0 856860.0 843110.0 779330.0 827690.0 830650.0 False True 683669.2762939859 728765.1512931916 877952.9905168831 892402.3107821067 900060.234071721 797627.28503148 802325.5483070281 837487.5619575543 623716.8899777785 777637.2058447559 0.8791622509256208 0.9371531426425591 1.12900075243076 1.1475818081680906 1.1574294893644854 1.0257061763975255 1.0317478925605843 1.076964368040727 0.802066677481343 1.0 19.568737720391344 1.2574469558686279 24.983061569968214 0.9010332877319708 1.0535680640740028 0.2748205416728251 0.09522306336375125 267.71483404200063 354138.3532979126 0.06641144576833796 0.02416566578130517 18.09034943717105 -1.2574469558686279 0.15253477634203205 NQAS(ph)DS(ph)ENEELPKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 NQASDSENEELPKPR 15 1 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 2 NQAS(1)DS(1)ENEELPKPR;NQAS(1)DS(1)ENEELPKPR;NQAS(1)DS(1)ENEELPKPR 150.27 3.8391e-05 1869440000.0 2760650.0 1966750.0 1413160.0 1631810.0 1769600.0 2578720.0 2280460.0 2340100.0 3125010.0 2200480.0 True False 2745786.9671370485 2032212.0848245185 1612120.644593083 1838396.9786867502 1994948.0707590517 2400459.15605394 2170145.437596809 2514730.144787029 2354893.158488632 2060043.4824742912 1.3328781603382078 0.9864898979625688 0.7825663187734203 0.8924068808871334 0.9684009525677321 1.1652468389505932 1.0534464228834024 1.2207170218400534 1.1431278895434773 1.0 20.974243358814203 2.744702282026279 24.022004672066466 1.132198706448524 0.9749827515311588 0.14821087091169427 0.14311997064429904 469.58853600983696 1836710.619385645 0.045555653313215136 0.04717411080777967 555.5233038364316 -2.744702282026279 -0.15721595491736517 NQDDLTHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NQDDLTHK 8 0 P24928;P24928-2 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 0 ; 133.57 0.0009136 439850000.0 761620.0 907280.0 874670.0 936510.0 999100.0 891420.0 946210.0 840890.0 1078180.0 864100.0 False True 757519.5225439377 937478.2663376591 997815.9332320717 1055072.0699774665 1126329.4628703475 829798.2335769698 900438.2074267819 903641.4817529005 812476.9858718119 808952.3982067714 0.9364203928725022 1.1588793956428027 1.2334668089790695 1.3042449374231115 1.3923309521884295 1.0257689270918884 1.1130917090088488 1.1170514899962338 1.0043569778306531 1.0 19.625695286002408 NQDECVIALHDCNGDVNR ddPTM_BT-474_Trastuzumab_2h_R1 4 NQDECVIALHDCNGDVNR 18 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 0 ;;; 268.3 1.9754e-31 4737330000.0 2995520.0 3041440.0 2718580.0 2545350.0 2714420.0 3312040.0 2906700.0 2826970.0 3807650.0 3129830.0 False True 2979392.4531535613 3142672.491810694 3101332.4336790354 2867591.049019383 3060085.297372163 3083086.470503538 2766091.8163276915 3037932.85646279 2869305.6773959897 2930081.5698177256 1.0168291844990867 1.0725546087804625 1.0584457667067484 0.9786727709419263 1.044368637683532 1.0522186488805942 0.9440323589693663 1.0368082881227685 0.9792579520489197 1.0 21.48250939736196 2.9580866093954508 0.6363724286163743 0.9958938356615467 1.048555697284774 0.2092666333163551 0.035206375928807904 1.3246692508644753 1.1751985889074255 0.025259149360393435 0.03428683497957999 908.001590797392 -2.9580866093954508 0.05266186162322739 NQDNLQGWNK ddPTM_BT-474_Trastuzumab_2h_R1 1 NQDNLQGWNK 10 0 P30085;P30085-3;A0A494BXC7;P30085-2;Q5T0D2 P30085 CMPK1 UMP-CMP kinase 0 175.93 6.1644000000000015e-06 206760000.0 229230.0 233360.0 251400.0 203070.0 219360.0 290650.0 228410.0 227130.0 311480.0 262340.0 False True 227995.85114984735 241127.24653090117 286794.9347920272 228778.64117876368 247294.19575141597 270558.0496165064 217360.93568906622 244079.59394277036 234719.92761816437 245597.23659942625 0.9283323147552873 0.981799509919504 1.1677449582211514 0.9315196064355804 1.0069095205446366 1.1016331183635901 0.8850300544854502 0.9938206036937981 0.9557107843236731 1.0 17.905934802381335 2.23439836032239 24.999589693755073 0.9593393687542167 1.0200813902781578 0.14029867838685606 0.07398148473066028 219.88165229793535 1320649.4172614638 0.026763895127255802 0.020483290164893517 171.55301707367252 -2.23439836032239 0.06074202152394115 NQDPAHPDKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 NQDPAHPDKPK 11 1 Q8ND04;Q8ND04-2;Q8ND04-3 Q8ND04 SMG8 Protein SMG8 0 ;;; 102.4 0.0017265999999999998 521890000.0 2158860.0 1551120.0 1513050.0 1369590.0 1485550.0 2155660.0 2060010.0 2022300.0 3141170.0 2063430.0 False True 2147236.9376318925 1602748.0915281584 1726074.2883336414 1542979.953572772 1674725.986955304 2006644.2980778199 1960359.4462975927 2173214.2950313264 2367070.743021538 1931740.1308086973 1.1115557954128024 0.829691357531196 0.8935333799847308 0.7987513066402073 0.8669520088368212 1.0387754885217222 1.0148153030692149 1.1250034413901933 1.2253567160871661 1.0 20.881469596618906 2.3419245495552206 1.6348872171175959 1.1195741751360713 0.8921121050562487 0.46116523587583214 0.09799243601237315 0.30729485720134586 1.6599095650742905 0.04830989325447808 0.0328532591333124 219.74780694052302 -2.3419245495552206 -0.22746207007982255 NQEIPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NQEIPHK 7 0 O00743;O00743-2;O00743-3 O00743 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed 0 ; 87.616 0.019211 908970000.0 1240630.0 1140550.0 1115010.0 1161780.0 1206410.0 1439040.0 1440250.0 1341560.0 1706740.0 1438960.0 False True 1233950.5859269516 1178512.5172729664 1271993.7161593426 1308861.2288800115 1360039.1625477106 1339562.5519357885 1370579.605210706 1441674.0195036463 1286136.796144297 1347124.3408443644 0.9159886348379122 0.8748357382766065 0.9442288863714461 0.9715964511929389 1.009586955941462 0.9943867179299601 1.017411358146524 1.0701863041091062 0.9547276054251674 1.0 20.361451588380177 3.7158242266104193 1.281889772429392 1.017592919616702 0.8917033514582654 0.6778408667641064 0.030001890110808165 0.2550249248752917 0.8025641784955878 0.009822701186268889 0.025615371424128376 5197.8557948107755 -3.7158242266104193 -0.12588956815843655 NQEQMKPLEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NQEQMKPLEEK 11 1 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ; 86.46700000000001 0.013177 232180000.0 369427.0 232778.0 228607.0 202228.0 228358.0 325533.0 326757.0 310062.0 483350.0 313474.0 False True 367438.0460791982 240525.87501272728 260792.8785123349 227830.04406509607 257438.0377160915 303029.669932256 310950.51557704195 333200.4009029337 364234.869058173 293467.8209414066 1.2520556594603958 0.8195988038523323 0.8886591983943768 0.7763373964963073 0.8772274823531376 1.0325822741320538 1.0595727823907684 1.1353899035133397 1.2411407420743947 1.0 18.162842793399356 2.3701571617995625 2.022539469151056 1.1298299143136807 0.9086903204717361 0.2979593386130771 0.13353052098457024 0.3640910826967722 3.047742421860296 0.05773967554619704 0.04296891546424315 234.50772946462877 -2.3701571617995625 -0.2211395938419446 NQESLGS(ph)PHICDLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 NQESLGSPHICDLGK 15 0 A4D1E1;A0A087WUA7 A4D1E1 ZNF804B Zinc finger protein 804B 1 NQES(0.004)LGS(0.996)PHICDLGK;NQES(0.024)LGS(0.976)PHICDLGK;NQES(0.004)LGS(0.996)PHICDLGK;NQES(0.01)LGS(0.99)PHICDLGK 82.171 0.012402 603570000.0 1253860.0 1145980.0 911130.0 828420.0 891640.0 1311310.0 1307880.0 1271320.0 2107310.0 1170090.0 True False 1247109.3570769436 1184123.2515404613 1039409.1843160709 933297.8870601829 1005185.068835669 1220662.2261917097 1244612.8478132114 1366192.354032155 1587991.6870072975 1095413.8544355507 1.138482366301236 1.0809825407499718 0.9488735057597586 0.8520048229087775 0.917630414080918 1.114338860375924 1.1362033105328402 1.2471928746383547 1.4496728159655825 1.0 20.063044601652873 2.2289057112977693 1.8829031037818782 1.2503366829363196 0.9865197757892835 0.39179014658563494 0.12899415088591773 0.325868332900516 2.3157208853605358 0.06581300124944645 0.04182846928645206 169.39699864915377 -2.2289057112977693 -0.2638169071470361 NQEYETLDHLECDLNLMFENAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NQEYETLDHLECDLNLMFENAK 22 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 0 125.58 2.0998e-05 47866000.0 50062.0 45420.0 45573.0 40698.0 36337.0 58810.0 52008.0 45117.0 73028.0 53669.0 False True 49792.47175441106 46931.7772430302 51989.28227238293 45850.362627140064 40964.301563727175 54744.60312384905 49492.17435014644 48483.859639483875 55031.22792506515 50243.79847165742 0.9910172651954061 0.934080994483418 1.0347402834542883 0.9125576493386403 0.8153106017021221 1.0895793070806645 0.9850404598303814 0.9649720187225429 1.095283987258812 1.0 15.616657916809848 2.7081239106485056 24.999997328783746 1.0163676542266589 0.9413609991183062 0.3083081130382914 0.06590548331018428 1055.2505388709492 866757.0549372891 0.021844073899506298 0.02059670260816891 510.6506753942457 -2.7081239106485056 -0.0750066551083527 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADS(ph)TESLSDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHR 43 0 Q6PD74;Q6PD74-2 Q6PD74 AAGAB Alpha- and gamma-adaptin-binding protein p34 1 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADS(0.945)T(0.054)ES(0.001)LSDHR;NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADS(0.925)T(0.074)ESLSDHR 250.29 4.4592e-56 1453150000.0 402430.0 561880.0 574990.0 669630.0 632180.0 665830.0 625000.0 220553.0 692330.0 511410.0 True False 400263.3615941766 580581.8361363681 655943.5940973267 754405.0893412894 712684.375775574 619802.7392952287 594766.3622681415 237011.7848054411 521714.548246705 478771.3759598715 0.8360219129468694 1.2126494299547053 1.3700559954785287 1.5757105107397236 1.4885693079431466 1.2945693297821084 1.242276360143118 0.495041676896963 1.0896945273738186 1.0 18.86897737568401 1.8980360401518568 7.8472352798944955 0.8162316908075563 1.3131212425440029 0.4056005675118435 0.23514285136552224 0.25351545653966734 17.44603215938472 0.1027428512975804 0.06421414372550104 79.07442455967052 -1.8980360401518568 0.49688955173644656 NQGGYDRYS(ph)GGNYR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQGGYDRYSGGNYR 14 1 P98179 P98179 RBM3 RNA-binding protein 3 1 NQGGYDRYS(1)GGNYR;NQGGYDRYS(1)GGNYR 212.72 1.234e-09 810500000.0 330900.0 284980.0 291650.0 309520.0 315180.0 344440.0 346130.0 325730.0 365860.0 331520.0 True False 329118.4711664462 294465.3870259518 332711.7849327561 348705.2002641993 355316.30478177994 320629.6735245462 329386.3695549951 350037.6266234254 275698.70527283143 310362.1097714484 1.0604337991155237 0.9487800789948135 1.0720116098507193 1.1235430785059002 1.1448443401916424 1.0330825298251092 1.061296979188459 1.1278362132581008 0.8883130272437469 1.0 18.24359291282044 -0.5386542821304579 6.057545799160246 1.0000000097030441 1.0587284057743518 0.030440821175456212 0.0763979588787726 0.0 0.0 0.07234287684718561 0.017051379596396084 0.2892981909227975 0.5386542821304579 0.05872839607130764 NQGGYGGS(ph)SSSSSYGSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 NQGGYGGS(0.631)S(0.184)S(0.184)S(0.001)SSYGSGR 271.73 6.0721e-39 95569000.0 184780.0 134210.0 133780.0 140780.0 109080.0 166670.0 137810.0 151060.0 221190.0 157970.0 True False 183785.16501098784 138677.09871834185 152615.0611633946 158602.7335655014 122970.6914321866 155148.49519897858 131143.60381467608 162332.8642671372 166680.68829414964 147888.21935507876 1.242730258112857 0.9377156566161564 1.0319622606109464 1.0724500859983792 0.8315110694309915 1.0490929965588938 0.8867751899818406 1.0976727218371392 1.1270721158251982 1.0 17.174147607638318 -0.6143448409772612 9.55130829070004 1.000000002274024 1.0230006589915868 0.0023592491684633066 0.11418993869377139 0.0 0.0 0.1037795724079657 0.024461079799437627 0.2430273543119513 0.6143448409772612 0.023000656717562684 NQGGYGGSS(ph)SSSSYGSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 NQGGYGGS(0.17)S(0.414)S(0.414)S(0.001)SSYGSGR 240.13 6.3902e-24 83886000.0 131370.0 117280.0 107650.0 108860.0 81441.0 124120.0 108870.0 108140.0 176580.0 103140.0 True False 130662.71851657909 121183.59390274275 122806.18428942612 122641.66483833284 91812.02861137419 115539.87654705228 103603.54217621227 116209.95592379334 133064.2250507752 96557.51689740355 1.353211253924578 1.2550404960341457 1.2718448882639857 1.2701410390311176 0.9508532485246939 1.1965912158845002 1.0729723123088948 1.2035309073582676 1.378082507984972 1.0 16.559100955333104 3.4414960585032355 24.99716836468475 1.14341502525429 1.2864433975524219 0.3034100856620989 0.11392003443897879 230.9640036653641 162060.0952647624 0.031079476798208217 0.042081935808568165 2763.73283643522 -3.4414960585032355 0.1430283722981318 NQGGYGGSSSSSSYGS(ph)GR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 NQGGYGGSSSSSSYGS(1)GR 203.82 1.1965e-15 100780000.0 96361.0 94681.0 90784.0 88653.0 71814.0 102380.0 96758.0 87682.0 132210.0 97111.0 True False 95842.20308271349 97832.39984912677 103565.59809132628 99876.46071020304 80959.08722507372 95302.71157659696 92077.44588854541 94225.27608017427 99628.61702323587 90913.29283908998 1.054215506772451 1.0761066593669983 1.1391689252156996 1.0985902896177926 0.8905087990638014 1.0482813744880624 1.0128050916769222 1.0364301318064264 1.0958641350673701 1.0 16.472203632285126 NQGGYGGSSSSSSYGSGR ddPTM_BT-474_Trastuzumab_2h_R1 7 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ;;;;;; 447.1 2.0050999999999987e-190 1239076000.0 135700.80000000002 132144.9 148086.35 126580.0 137535.5 148888.0 158213.80000000002 148895.6 186867.0 132480.0 False True 134970.20197057625 136543.2631132211 168935.62089037147 142605.0150214603 155049.8306882239 138595.72300465286 150560.39405859078 160006.9457485369 140816.13173951284 124025.01297816554 1.088249851619347 1.1009332701078562 1.362109278070484 1.1498085071481972 1.2501496832378503 1.1174820278313735 1.2139518508665406 1.2901183552119921 1.1353849385551231 1.0 16.92027158263321 -3.172626195395784 9.398042850990178 1.026183308816413 1.1881913822345462 0.0 0.10364305935959578 0.0 0.0 0.0 0.021753167391404118 0.0006720070118729956 3.172626195395784 0.16200807341813328 NQIGDKEK ddPTM_BT-474_Trastuzumab_2h_R1 6 NQIGDKEK 8 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;;; 133.57 0.00083321 7630490000.0 13171150.0 11364220.0 10361940.0 9694410.0 10587810.0 13125430.0 15111550.0 15426500.0 28476320.0 13935180.0 False True 13100237.991852319 11742471.192883937 11820811.084402947 10921721.31200975 11936104.844633475 12218099.9180388 14380546.594773004 16577703.764179744 21458712.499138556 13045824.881892178 1.004170921383106 0.9000941909915319 0.9060991690000706 0.8371813519564624 0.9149367673332015 0.9365525007926272 1.1023102582599773 1.2707286748260642 1.6448720332681765 1.0 23.637084832237434 1.922309087511408 2.100871895735121 1.347322911549544 0.9100160200994705 0.5700319053490082 0.1508846424195703 0.20141734347968265 1.639109065395761 0.08454451839946281 0.041641348883369955 83.6197928820738 -1.922309087511408 -0.4373068914500735 NQKDPGVLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 NQKDPGVLDR 10 1 P31949 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed 0 ;;;;; 152.7 1.6025e-05 14203920000.0 13362800.0 16264600.0 15736500.0 17477000.0 17170400.0 18853900.0 21016600.0 17854400.0 29597200.0 20031900.0 False True 13290856.16954666 16805957.378841676 17952062.41588997 19689586.408042822 19356948.663065787 17550574.27030672 19999946.7667914 19186785.99080613 22303366.642161064 18753446.991827555 0.7087153724506539 0.8961529784985894 0.957267345235955 1.049918258580581 1.0321808396878307 0.9358585799162669 1.0664677685924646 1.023107165267666 1.189294248245696 1.0 24.16065245987117 5.430960549655014 0.7619669520145097 1.046455476106507 6.9377223159966885e-15 0.7474691960044122 0.0602806574446296 3.2794610037673184 0.6800267511360663 0.020922717793848872 3.73601821868859 269749.4386923761 -5.430960549655014 -1.0464554761065001 NQKPEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQKPEVR 7 1 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 ; 119.29 0.0043911 2078310000.0 4217600.0 3410600.0 3521100.0 3362400.0 3262700.0 3842400.0 4479000.0 3792400.0 5328400.0 3981800.0 False True 4194892.910219407 3524119.759248767 4016840.274050155 3788079.495245365 3678185.505461996 3576783.9320366895 4262333.6585584115 4075408.1454170034 4015287.2169019706 3727678.115009511 1.1253366789714632 0.9453927218283372 1.0775716545579221 1.016203486023283 0.9867229390466327 0.9595205974557607 1.1434285705614193 1.0932832770639065 1.0771550260024867 1.0 21.82984585798358 2.2374299242694473 24.999793680512244 1.0890373571650587 1.0162788686053088 0.1856878511392196 0.059846142479357635 40.5673297941764 896914.9366388946 0.020480798475134496 0.015995416874591238 172.75472090634221 -2.2374299242694473 -0.07275848855974987 NQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_BT-474_Trastuzumab_2h_R1 3 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 NQKPSQVNGAPGS(0.959)PT(0.041)EPAGQK;NQKPSQVNGAPGS(0.998)PT(0.002)EPAGQK;NQKPSQVNGAPGS(0.972)PT(0.028)EPAGQK 227.79 1.1597e-25 5183900000.0 5336500.0 3510890.0 3927800.0 3668420.0 3924240.0 6311600.0 5026200.0 5353600.0 8347700.0 5250400.0 True False 5307768.876940891 3627747.8512721756 4480800.098950381 4132841.5958684245 4423968.703207222 5875293.947908279 4783063.504051412 5753112.817029964 6290521.188449167 4915314.976906408 1.079843082666797 0.7380499252471916 0.9115997896375909 0.840809106900723 0.9000376830360466 1.1953036530745504 0.9730939983548661 1.1704464198245232 1.279779875349572 1.0 22.22885243778442 2.774119415111617 9.526698511179758 1.1245000087954655 0.8831923582837583 0.49807065437654474 0.11501375248596658 0.39471560019139484 103.15529144101353 0.03358158104800124 0.03544732149538255 594.4555897090717 -2.774119415111617 -0.24130765051170722 NQLNPIGSLQELAIHHGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQLNPIGSLQELAIHHGWR 19 0 O75569;O75569-3;O75569-2 O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 0 ; 176.94 2.3847999999999998e-14 931600000.0 684740.0 662590.0 676300.0 689060.0 686640.0 818510.0 684780.0 587940.0 940090.0 731820.0 False True 681053.4359217663 684643.9076058869 771517.1614950201 776294.9253490859 774079.5339658648 761928.3302652894 651654.5752863643 631815.068298826 708417.4160606134 685114.6210573761 0.9940722544654762 0.9993129420435332 1.1261139928736217 1.133087663712367 1.1298540567871462 1.1121180410503608 0.9511613900176716 0.9222034516264009 1.0340129874432875 1.0 19.385985848491707 2.2346043864881464 24.99916085401813 0.964515896204176 1.0850929822412791 0.4618105913035 0.05515502850421437 88.27164644329021 557776.5856563947 0.022207609951240003 0.01700587859614087 171.63441989295103 -2.2346043864881464 0.12057708603710315 NQLS(ph)QNR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQLSQNR 7 0 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 1 NQLS(1)QNR;NQLS(1)QNR 73.039 0.03219 918820000.0 14160.099999999999 14269.1 8109.6 13308.099999999999 8666.3 0.0 0.0 0.0 10258.0 11568.0 True False 14083.863594935008 14744.038367646906 9251.361190093186 14992.904095489768 9769.90193581553 0.0 0.0 0.0 7730.053350157719 10829.720336136925 1.3004826678616588 1.361442208110266 0.8542567031230692 1.3844220931043816 0.902137971487134 0.0 0.0 0.0 0.7137814375837438 1.0 13.40270836719764 2.9085593891011916 4.261516908946084 0.23399352196200063 1.2042493793869442 0.5885576304535424 0.3433150723536819 0.14016039563650143 4.493801328455069 0.10387350237323019 0.11229671909648527 810.1387193273589 -2.9085593891011916 0.9702558574249436 NQLTSNPENTVFDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NQLTSNPENTVFDAK 15 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 188.4 2.2103e-11 0.0 42187.0 42523.0 34304.0 41298.0 36894.0 44449.0 41824.0 43932.0 69457.0 41829.0 False True 41959.86987941633 43938.35234930369 39133.70502428683 46526.32256562067 41592.2322121295 41376.34525169131 39800.81333680441 47210.42892217582 52340.25302611674 39159.43740839138 1.071513603268081 1.1220373748241912 0.9993428816702296 1.1881254084526418 1.062125376786358 1.0566123517092427 1.0163785787248207 1.2055951782407175 1.3365935899503214 1.0 15.257072417883444 1.6586522752992439 7.111659635317768 1.2039254408002127 1.0763330887806783 0.20944735792627678 0.0916672512300278 0.153688693135557 15.019554415667084 0.043189875968756286 0.022009138531749118 45.56719289648742 -1.6586522752992439 -0.12759235201953434 NQLTSNPENTVFDAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQLTSNPENTVFDAKR 16 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 77.562 0.037807 232990000.0 28210.0 33734.0 28547.0 31690.0 40015.0 30543.0 25141.0 35350.0 44143.0 39069.0 False True 28058.120494425628 34856.815797366384 32566.16946502788 35701.95075075111 45110.673062513226 28431.63430048837 23924.833782053363 37987.996503662805 33264.54913589515 36575.58297134627 0.7671270890311352 0.9530077982536493 0.8903800519198993 0.9761143323052546 1.233354861297862 0.7773391971021224 0.654120367699849 1.0386162958338363 0.9094742020094382 1.0 15.158593238941716 3.948072070436919 0.007973036625047591 1.8208190515871785 8.249085325751317e-06 0.022338795521138266 0.15263629195299727 59691.63433973983 97.5188640641305 10651.66502432927 11628.979039436452 8873.032462984444 -3.948072070436919 -1.8208108025018528 NQNAPDSRPEENFFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQNAPDSRPEENFFSR 16 1 Q9HAU5 Q9HAU5 UPF2 Regulator of nonsense transcripts 2 0 142.01 1.7882e-05 0.0 110650.0 102070.0 104520.0 92587.0 106030.0 105940.0 103290.0 100270.0 141020.0 108690.0 False True 110054.2726943707 105467.33824738214 119235.50749587404 104308.5047068409 119532.2920109529 98616.61715593567 98293.4680938822 107752.65656074317 106267.5105711875 101753.3111458095 1.0815792769305184 1.0365003070637235 1.1718096065199597 1.0251116502476258 1.1747263127355791 0.9691735437937835 0.9659977349830962 1.0589597070343666 1.0443641526211298 1.0 16.63471621630833 2.721532999522646 24.93474558737735 1.0117711838946157 1.094589063352997 0.41854194158479485 0.05300288101734652 855.8666520921199 1253305.3240529515 0.016717311425816946 0.015797709415362626 526.6632314625746 -2.721532999522646 0.08281787945838137 NQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEK 39 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 220.64 5.1336999999999984e-40 90744000.0 26423.0 25389.0 26541.0 36375.0 40314.0 43647.0 32071.0 26236.0 33399.0 28620.0 False True 26280.741503871286 26234.057517025394 30277.74210149244 40980.07127038725 45447.74894020137 40629.7856239864 30519.603206882522 28193.863543708554 25168.26397367107 26793.447097185253 0.980864515437141 0.9791221496013245 1.1300428045584783 1.5294811123684176 1.6962262741092322 1.5164075557957863 1.1390696798430506 1.052267124922139 0.9393440075993463 1.0 14.709592581860553 1.880436309153846 2.9819683462777773 0.9967951469526216 1.3103587682874926 0.2711476243953729 0.22424870978867967 0.4109397437887387 6.427372893302921 0.1390623564541787 0.07292616978733624 75.93400545545579 -1.880436309153846 0.31356362133487103 NQNYLVPS(ph)PVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQNYLVPSPVLR 12 0 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 NQNYLVPS(1)PVLR;NQNYLVPS(1)PVLR 145.83 6.7374e-05 498610000.0 623540.0 605550.0 527180.0 577860.0 574220.0 652970.0 635700.0 622350.0 872860.0 650990.0 True False 620182.9299218068 625705.365687295 601402.3616692958 651017.0167506797 647343.5133314097 607831.7208260453 604948.7623901726 668792.9172292658 657755.3487247687 609443.2608594215 1.0176220983184563 1.0266835419673705 0.9868061561977295 1.0682159580083501 1.062188319907816 0.9973557176904317 0.9926252388730809 1.097383399212834 1.079272495026393 1.0 19.21713238668989 1.738461789833744 24.99999935978632 1.067239054418925 1.0229129407582767 0.18216962695169125 0.034764813919747915 0.05776925543199649 4960.8508767121575 0.016048354995679512 0.008899644326410865 54.759791999500585 -1.738461789833744 -0.044326113660648314 NQPTVYIAAS(ph)PPNTDELMSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQPTVYIAASPPNTDELMSR 20 0 A0A1B0GV57;Q9NYJ8;Q9NYJ8-2 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 NQPTVYIAAS(0.942)PPNT(0.058)DELMSR;NQPTVYIAAS(1)PPNTDELMSR 235.21 1.6287e-29 392570000.0 271760.0 291810.0 281970.0 304520.0 307820.0 352280.0 343600.0 300940.0 394150.0 323260.0 True False 270296.8743553742 301522.71944712976 321668.92507282394 343072.2007768606 347019.05240791757 327927.712777921 326978.755320534 323397.6709423566 297017.0138394101 302629.27004319045 0.8931617034822776 0.9963435440468043 1.0629141227050385 1.1336385298351948 1.1466803999441029 1.0835954920392201 1.0804597826042024 1.0686265439433604 0.981455011926046 1.0 18.207192004965606 4.555837493687755 2.123276586295622 1.0781110414004715 0.8775918182202603 0.5588653046839651 0.048492460254972385 0.327866105300304 2.1896032661177873 0.01275124042871879 0.10819434342902437 35961.47476721695 -4.555837493687755 -0.2005192231802112 NQQFHK ddPTM_BT-474_Trastuzumab_2h_R1 6 NQQFHK 6 0 Q15233;Q15233-2;H7C367 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;;;; 164.83 0.0074614999999999985 6769550000.0 9344780.0 8152120.0 7772660.0 7254360.0 7362280.0 7590130.0 8875660.0 8472870.0 12304100.0 8341900.0 False True 9294468.742782673 8423458.386139406 8866982.966828173 8172761.23219372 8299822.718347613 7065442.178344173 8446310.417486168 9105158.58376208 9271919.42149305 7809512.800140089 1.1901470655910757 1.0786150943997816 1.1354079561364077 1.0465135843105493 1.062783675596092 0.904722529965945 1.0815412732705498 1.1659060964211172 1.1872596484286098 1.0 22.896801117339812 -0.0446088162711229 12.474926189187467 0.999997657281486 1.0923280765060923 0.11097357398086083 0.08020114739674265 0.0 0.0 0.08172952790512276 0.01926383446829583 0.9023835790650209 0.0446088162711229 0.09233041922460627 NQS(ph)PTEAEKPASSSLPSSPPPQLLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 NQS(0.999)PT(0.001)EAEKPASSSLPSSPPPQLLTR 211.15 7.1237e-26 521930000.0 291410.0 224960.0 184450.0 179310.0 209450.0 277830.0 250030.0 259480.0 369550.0 253810.0 True False 289841.0809386944 232447.65760880808 210418.95673185965 202010.62761493155 236122.2159925875 258624.26604147226 237935.09369264578 278843.7152127423 278479.35421629803 237611.62850232646 1.219810169921278 0.9782671794050356 0.885558329186736 0.8501714705135051 0.9937317356093774 1.0884326986502686 1.001361318856144 1.1735272257940528 1.1719937949651795 1.0 17.858245916518765 2.332842604679711 1.5327604342193077 1.1201186016235027 0.9751404316082052 0.1656823491806616 0.10758210847350307 0.5908102478480838 2.7877501973114636 0.05858841641231427 0.038707528019712625 215.200167328669 -2.332842604679711 -0.14497817001529756 NQSFCPTVNLDKLWTLVSEQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQSFCPTVNLDKLWTLVSEQTR 22 1 P46776;E9PLL6;E9PJD9 P46776 RPL27A 60S ribosomal protein L27a 0 ; 287.38 2.1597999999999998e-46 569660000.0 184116.0 206192.0 208049.0 254533.0 244001.0 268440.0 252922.0 225533.0 418860.0 292929.0 False True 183124.73991321077 213054.97607430373 237340.49080567437 286756.8517021432 275073.0810427662 249883.37463978998 240687.19660413248 242363.41769336857 315637.565436446 274234.0204308654 0.6677681333099831 0.7769093555189118 0.8654669848502917 1.045664761985411 1.0030596517914974 0.9112048689188282 0.8776708164288824 0.8837831911320738 1.1509788790629587 1.0 18.065048031922895 4.26420474027942 2.0590791054450563 0.9632997754377223 0.6804264223751578 0.6259108970181464 0.08036842704331314 0.24809199245291444 1.9629733016583848 0.022142276102134612 0.09198192002631149 18374.043502527333 -4.26420474027942 -0.28287335306256445 NQSPTEAEKPASSSLPS(ph)SPPPQLLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 NQSPTEAEKPASS(0.002)S(0.01)LPS(0.551)S(0.434)PPPQLLT(0.002)R;NQSPTEAEKPASSSLPS(0.873)S(0.127)PPPQLLTR 215.57 2.5212e-34 1024040000.0 1492320.0 1145500.0 1087150.0 1020980.0 1140960.0 1468540.0 1322710.0 1437780.0 1943430.0 1404100.0 True False 1484285.514932339 1183627.2750306271 1240211.2703228034 1150235.963316562 1286254.4930002533 1367023.2863713182 1258725.4640571107 1545074.444498908 1464497.7171278067 1314489.135889511 1.129172904063545 0.9004466014317188 0.9434929787255761 0.8750441003365163 0.9785204440886067 1.039965450491348 0.957577685269597 1.1754181927516354 1.1141193009075616 1.0 20.326070787610984 1.7520583114736321 24.999999999993705 1.11105781936392 0.9696202943987964 0.3294919375618286 0.07843945461877566 4.037433403330123 7488.932353235137 0.03535822725715175 0.019608040087208258 56.50128323709796 -1.7520583114736321 -0.14143752496512363 NQSPTEAEKPASSSLPSS(ph)PPPQLLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 NQSPTEAEKPASSS(0.001)LPS(0.214)S(0.785)PPPQLLTR 140.27 1.9309e-07 206440000.0 292630.0 221220.0 226130.0 224630.0 252840.0 314020.0 297350.0 264870.0 389380.0 292570.0 True False 291054.51259424945 228583.17396968594 257967.13844280527 253068.13496816752 285037.67529990827 292312.5365235685 282966.0445126908 284635.9443826073 293422.51642468467 273897.93211822107 1.0626385907456328 0.8345560413761132 0.9418367508209603 0.9239505132844051 1.040671147443636 1.0672316299102222 1.0331076336514864 1.039204429844879 1.0712841610576174 1.0 18.063278848424428 3.2344603249521735 24.34462193798078 1.0440637114928992 0.9332384502501027 0.44749648968086464 0.054788032945764745 58.81553191356635 349205.5940935433 0.014569156479744893 0.01802744608331037 1715.7749580417437 -3.2344603249521735 -0.11082526124279657 NQTAEKEEFEHQQK ddPTM_BT-474_Trastuzumab_2h_R1 7 NQTAEKEEFEHQQK 14 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;;;; 241.3 1.1816e-17 33738660000.0 25483650.0 14380490.0 13662090.0 11415570.0 13304160.0 19686410.0 17833680.0 19303580.0 27239760.0 18152450.0 False True 25346448.85989969 14859135.916460235 15585593.51898493 12860779.991535233 14998365.916065607 18325534.81352448 16970996.76712657 20744111.16119308 20526886.142083503 16993945.099905685 1.4914988080101754 0.8743782464345317 0.9171262721727534 0.7567860150146425 0.8825711644878061 1.0783567150411817 0.9986496171051393 1.2206766021215527 1.2078941070721374 1.0 24.01851747349508 1.8135763129078761 6.463592516981979 1.162263080765276 0.9800820666279749 0.09395637469928408 0.19435480992405027 0.4437982394864963 29.653008793777282 0.08714395705228735 0.05163578735375921 65.09929913028895 -1.8135763129078761 -0.18218101413730114 NQTYSFS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 4 NQTYSFSPSK 10 0 Q86YS7;H0YFE9;Q86YS7-3 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 1 NQT(0.001)YS(0.246)FS(0.644)PS(0.109)K;NQTYS(0.055)FS(0.942)PS(0.003)K;NQTYSFS(0.92)PS(0.08)K;NQTYSFS(1)PSK 238.93 3.3535e-12 1323900000.0 1708430.0 1305350.0 1338600.0 1008810.0 896800.0 1517820.0 1603830.0 1370440.0 2514110.0 1466170.0 True False 1699232.0027044164 1348797.785649263 1527063.2446802217 1136525.2425643792 1011002.1642499524 1412896.6759639627 1526246.6156744233 1472709.191753316 1894541.2778480249 1372597.7753487092 1.2379679125392182 0.9826606234347133 1.112535130178446 0.8280104069640098 0.7365611269427468 1.0293595846787786 1.1119401787509668 1.0729357268404238 1.38025961565231 1.0 20.388477490858083 2.036053005832156 1.9760771659716871 1.163351407575111 0.9747304378167753 0.18609732405099433 0.1582405864640421 0.5629706580351127 4.14276974655879 0.09254769231294302 0.04946145680161322 108.65582304335253 -2.036053005832156 -0.18862096975833575 NQVGDENWR ddPTM_BT-474_Trastuzumab_2h_R1 2 NQVGDENWR 9 0 Q92973-2;Q92973;Q92973-3;S4R398 Q92973-2 TNPO1 Transportin-1 0 ; 136.57 0.00044001 1043070000.0 709400.0 796000.0 709820.0 776890.0 771220.0 791210.0 818050.0 754260.0 922060.0 849990.0 False True 705580.6692217495 822494.3788078382 809756.4861339567 875244.1943436741 869430.2956209285 736515.5150080031 778477.7962455262 810546.7112546739 694830.6679709906 795742.9104869498 0.8866942575586051 1.0336182301699903 1.0176106823728173 1.0999082527899293 1.0926020001722492 0.925569685009568 0.9783031504096488 1.0186037482365566 0.8731848676424819 1.0 19.601942872951 2.7262448827964922 24.665495669921576 0.9667193613068229 1.030135415978577 0.1980240653220744 0.06624987922057685 1164.5835550128666 2332380.6161643234 0.02179819429427618 0.020699238455109067 532.408380285552 -2.7262448827964922 0.06341605467175404 NQVIIPLVLS(ph)PDRDEDLMR ddPTM_BT-474_Trastuzumab_2h_R1 5 NQVIIPLVLSPDRDEDLMR 19 1 Q96G25-2;Q96G25 Q96G25-2 MED8 Mediator of RNA polymerase II transcription subunit 8 1 NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR 228.29 6.490600000000001e-20 369401000.0 266677.0 249653.0 238338.0 250502.0 254148.0 288300.0 253928.0 240004.0 340275.0 285927.0 True False 265241.2406626 257962.54918657476 271893.91872896685 282215.52751545125 286512.24134678533 268370.49958520127 241644.53254083978 257914.31719561786 256418.78570139586 267678.8940655793 0.9908933671760385 0.9637014905006889 1.0157465708236038 1.054306236958341 1.0703579837586747 1.0025837133033453 0.9027403276764836 0.9635213044941482 0.9579342689550085 1.0 18.030143864340687 2.456043446562171 22.309294474575466 0.9523802035271358 1.0195856448617926 0.41257398546829693 0.035540270080724655 67.57121218894936 71517.37822479695 0.013134847569386448 0.01099146808366458 285.78764293363236 -2.456043446562171 0.06720544133465678 NQYDNDVTVWSPQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NQYDNDVTVWSPQGR 15 0 P25786;P25786-2;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 247.13 7.1539e-18 648620000.0 211510.0 211320.0 206180.0 182130.0 193340.0 242600.0 249800.0 199660.0 279280.0 238980.0 False True 210371.25366097037 218353.65845436256 235208.35185131337 205187.63932579025 217960.70298403833 225829.63301897296 237716.219671331 214559.64305293708 210455.18616026975 223728.0917989282 0.9402987884509288 0.9759778340692424 1.0513134491072442 0.9171295284196995 0.9742214365280816 1.0093932827261294 1.0625228944650116 0.9590196802186509 0.9406739424989722 1.0 17.771386890219226 2.8173093599055328 10.267759987349686 0.9947788940820118 0.9733695465301853 0.060881694000665676 0.04401744429954507 2.103983740033637 266.1807261765568 0.013934324217406447 0.014783443868546572 656.612823131607 -2.8173093599055328 -0.021409347551826552 NRAEVSQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NRAEVSQPR 9 1 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ; 129.85 0.00034444 109262000.0 76358.0 108102.0 79386.0 101845.0 97581.0 80578.0 97846.0 76788.0 130220.0 102256.0 False True 75946.8970121714 111700.10972096091 90562.8587645182 114738.5665575968 110007.36194209923 75007.83252020937 93112.81517198174 82518.31048156318 98129.02585860186 95729.93453423388 0.7933453353090104 1.1668253014527652 0.9460244510261533 1.198565183564032 1.1491427679056818 0.7835358175596151 0.9726614316098144 0.8619906707661427 1.0250610358822512 1.0 16.54668250228835 2.7504085418213458 24.934989809486712 0.9190953110799306 1.059617997454657 0.1809991043254906 0.1284133970333631 1077.595592242507 2267892.2757120864 0.037417630233448636 0.039405344270014755 562.870569864483 -2.7504085418213458 0.1405226863747263 NRDEAIK ddPTM_BT-474_Trastuzumab_2h_R1 4 NRDEAIK 7 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;; 107.29 0.0068488 4450110000.0 6427500.0 9149100.0 9212600.0 9876200.0 9877600.0 8307000.0 9145700.0 7671600.0 7827900.0 9468200.0 False True 6392895.054162389 9453622.262752252 10509654.002645312 11126525.90737041 11135453.810877929 7732756.642574632 8703287.55103319 8244093.747595468 5898818.933486019 8863931.369866159 0.7212256940408732 1.0665270147387205 1.1856650919448626 1.2552585803175522 1.2562657974467224 0.8723845345715253 0.9818766851716503 0.9300719289887676 0.6654856279167117 1.0 23.07951528050177 2.714780989813368 24.10168959206531 0.8970805887237152 1.1090154112700457 0.2790903445760662 0.16560446959622413 687.6739207131161 696986.3944177107 0.05559523062688132 0.05244922210335379 518.5384794259537 -2.714780989813368 0.21193482254633045 NRDNDPNDYVEQDDILIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NRDNDPNDYVEQDDILIVK 19 1 P19387 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 0 ; 200.26 5.9764e-16 503960000.0 508490.0 503920.0 484160.0 480900.0 469430.0 577430.0 621360.0 610870.0 791830.0 592220.0 False True 505752.34633854957 520692.6725739278 552325.51960584 541781.890692212 529209.1279703999 537513.6232240122 591302.4429742927 656456.2213350069 596694.1064783958 554424.0125749499 0.912212196563509 0.9391596697907053 0.9962150034603232 0.977197737478896 0.9545205762509407 0.9694991757799242 1.0665166543347675 1.1840328096291892 1.0762414558978568 1.0 19.080630217612846 2.1675079610514127 3.75577825298873 1.1107218227992424 0.9588691721622813 0.5993089110242327 0.04840498140243207 0.12882135908263062 3.6072526345887472 0.018937110819987626 0.01365070576259991 147.06453735553285 -2.1675079610514127 -0.15185265063696107 NRDVITLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NRDVITLR 8 1 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;H0YGA9;H0YFF3;H0YH17 Q9Y365 STARD10 PCTP-like protein 0 ; 144.77 0.00052903 580060000.0 255810.0 327590.0 291370.0 300520.0 319760.0 324120.0 330110.0 273070.0 450930.0 339930.0 False True 254432.7473831628 338493.63511766307 332392.36336655915 338565.8011869906 360479.5406339929 301714.34729641135 314141.31815733784 293447.87002136407 339804.3436524295 318235.37637128495 0.7995111991770403 1.0636580979065722 1.044485899577542 1.0638848673818908 1.1327450289920682 0.9480855043104996 0.9871351253885408 0.9221095195871583 1.0677767743080206 1.0 18.27973469501637 -3.0108368010165627 8.997556501849266 1.0005337567099317 1.0033424185526068 0.0 0.09020316050930846 0.0 0.0 0.0 0.01964696110996647 0.0009753560877291436 3.0108368010165627 0.002808661842675031 NREEEIEQLNEVIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NREEEIEQLNEVIEK 15 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A0A0MRE9;A0A6I8PUA5;H7BYL6 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 0 168.41 1.1451e-06 67396000.0 124550.0 117740.0 99100.0 89765.0 90409.0 136320.0 127480.0 106060.0 165670.0 124550.0 False True 123879.43663880577 121658.90472466688 113052.41860735836 101129.23979618713 101922.0502538736 126896.51926276325 121313.30537910842 113974.73576176736 124842.84836426486 116601.11236738012 1.062420710434507 1.043376879127456 0.969565523964808 0.8673093913337199 0.8741087300500482 1.088295957785934 1.040412933599479 0.977475544166871 1.0706831678493525 1.0 16.831222026262083 2.7217096810540946 24.9987570828417 1.0297172759057514 0.9628108521527817 0.23244031489074013 0.06502585283421335 1501.5827394167331 2227630.0237806924 0.023381909894375143 0.022097310933844254 526.8775344311257 -2.7217096810540946 -0.06690642375296962 NREEEWDPEYTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 NREEEWDPEYTPK 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;; 133.47 9.7427e-05 4041750000.0 7169940.0 6639270.0 6528640.0 6112280.0 6432120.0 7779900.0 8006600.0 7692100.0 10892600.0 8120200.0 False True 7131337.839695224 6860254.088426526 7447815.764043849 6886094.02129381 7251212.355837882 7242093.8249146985 7619290.169817764 8266123.561692351 8208264.683362051 7601961.88394701 0.9380917648053986 0.9024320554557447 0.9797228501988848 0.905831169166358 0.9538606568325733 0.9526611597734735 1.0022794491915759 1.0873671412570278 1.0797560956856893 1.0 22.857940360904152 2.077140688872869 2.5268616923547027 1.0639191894336062 0.9367592848954291 0.7435495111820228 0.03083688611250716 0.12412959646943038 1.5460818820103266 0.01425387263455999 0.008598164392234795 119.43749573005681 -2.077140688872869 -0.12715990453817705 NREELDK ddPTM_BT-474_Trastuzumab_2h_R1 6 NREELDK 7 1 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;; 137.9 0.0025879 18537400000.0 13034760.0 9048710.0 8220820.0 7002260.0 7771040.0 10137010.0 10200250.0 10131450.0 14153630.0 10160050.0 False True 12964582.300457977 9349890.842289304 9378239.99935161 7888745.398042103 8760635.881437268 9436262.358654808 9706824.938760975 10887510.245460669 10665657.535425324 9511626.910543572 1.3630246878256786 0.982995961702936 0.9859764357405457 0.8293791874129844 0.9210449446588537 0.9920765866241849 1.020522044236305 1.1446527863064035 1.121328415815229 1.0 23.181260696427838 -0.31438926784605775 8.165206364062062 1.0000000139548761 1.0329692009205524 0.0051854513240592315 0.13774103001943705 0.0 0.0 0.13608664503011816 0.03207592984324105 0.4848537201189573 0.31438926784605775 0.0329691869656763 NREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR ddPTM_BT-474_Trastuzumab_2h_R1 18 NREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR 38 2 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;;;;;;;;;;;; 333.35 1.5243999999999992e-129 6798142000.0 1378090.0 1260372.0 1215575.0 1156787.4 1170956.2 1519100.0 1497344.0 1386022.0 1926959.0 1576998.0 False True 1370670.5165601913 1302322.7201090357 1386717.3940326916 1303236.5662319171 1320070.5312688465 1414088.1925767567 1424911.7503104464 1489453.9997171068 1452085.7743777134 1476352.6375040861 0.9284167493190784 0.8821217147081714 0.9392860207010356 0.8827407037624574 0.8941431049295585 0.9578254928086873 0.9651567749554704 1.0088741415026492 0.9835629628654315 1.0 20.49360593002765 2.394965354054821 1.8527604173363952 0.9956176382128759 0.9047711928445762 0.800725174228073 0.019904015171156784 0.1363624900009104 0.9547291368503374 0.008553776036477376 0.006357302287843881 248.2935020665066 -2.394965354054821 -0.09084644536829967 NREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRR ddPTM_BT-474_Trastuzumab_2h_R1 11 NREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRR 39 3 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;;;;; 200.03 5.7976000000000005e-31 4213535300.0 463796.0 502279.1 463061.5 479962.4 491571.0 603932.0 594216.0 554656.0 837813.0 629655.0 False True 461298.9738685803 518997.15620937257 528256.5341972888 540725.590628347 554169.6530804123 562183.6023430103 565471.5019544421 596047.2472060991 631345.2122690281 589469.8788252337 0.7825658111452823 0.8804472880678694 0.896155262844069 0.9173082629870247 0.9401153018790852 0.9537104821426962 0.9592882049908668 1.011158107677993 1.0710389706887968 1.0 19.169058569610115 6.438188343544292 0.2589004872677694 1.0380401133076393 0.25474780878416614 0.8676353143568858 0.027503928334419843 7.659128375437305 0.2129331054891688 0.03552515695353613 2.2420804234334715 2742763.3875418226 -6.438188343544292 -0.7832923045234732 NREELGFRPEYSASQLK ddPTM_BT-474_Trastuzumab_2h_R1 4 NREELGFRPEYSASQLK 17 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;; 221.13 2.1281e-15 7237400000.0 3239620.0 3057670.0 3571140.0 3363110.0 3418730.0 3872170.0 4450580.0 3543450.0 4743100.0 4208590.0 False True 3222178.245875616 3159442.6975494497 4073925.4710946763 3788879.3811725597 3854085.001099728 3604496.0020077345 4235288.44253336 3807880.2322745123 3574226.5592837897 3939994.1830448196 0.81781294493829 0.8018901934286204 1.0339927628893997 0.96164593274717 0.9781956069085612 0.914848051684733 1.0749478922479874 0.9664684909082252 0.9071654406661166 1.0 21.909762069031565 4.2482464028023275 24.999065695854117 0.979835840070809 0.8098514682007414 0.6718896993081104 0.04746504020339536 107.91919382925686 278534.1775861942 0.011207195329281406 0.029874273537718637 17711.135383429508 -4.2482464028023275 -0.16998437187006765 NREPVQLETLSIR ddPTM_BT-474_Trastuzumab_2h_R1 4 NREPVQLETLSIR 13 1 P62314;J3QLI9 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 0 ;;; 296.04 9.857799999999998e-41 9080020000.0 3204530.0 3323700.0 3298690.0 3199020.0 2680410.0 3491600.0 3699870.0 3021280.0 4919220.0 3363900.0 False True 3187277.166536755 3434327.3452809188 3763116.8792725257 3604015.6039970885 3021744.3254652293 3250233.9103423106 3520893.153224045 3246743.255348977 3706944.145170881 3149213.022020319 1.0120868751177767 1.0905351023468364 1.1949388158119478 1.144417852586231 0.9595236347418269 1.032078137495184 1.1180231786814097 1.0309697161312033 1.17710174549982 1.0 21.58655991822902 NRGPS(ph)PEPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NRGPSPEPLK 10 1 Q92674-2;Q92674 Q92674-2 CENPI Centromere protein I 1 NRGPS(1)PEPLK;NRGPS(1)PEPLK 78.814 0.017487 390250000.0 922410.0 936360.0 859890.0 818580.0 850660.0 1208630.0 1137650.0 1102160.0 1585530.0 1072840.0 True False 917443.8470493847 967526.1765584259 980955.0377021345 922212.1440691017 958986.5087431578 1125080.2529089896 1082617.5232549626 1184408.7758550772 1194797.3765135077 1004370.4326954661 0.9134516680137693 0.9633160685165134 0.9766864951106825 0.9181992161936974 0.9548135603409693 1.1201845616756858 1.0779066049858734 1.1792549215894732 1.1895983171338345 1.0 19.937860032684323 2.7406845300033966 4.79735975326617 1.1270098904232282 0.9453784059543471 0.7119806891685507 0.053154499487846 0.09597017138130888 6.489848910843798 0.01666148302498955 0.016701528638551292 550.407736898428 -2.7406845300033966 -0.1816314844688811 NRHS(ph)PDHPGMGSSQASSSSSLR ddPTM_BT-474_Trastuzumab_2h_R1 10 NRHSPDHPGMGSSQASSSSSLR 22 1 J3KR33;A0JLT2 J3KR33 MED19 Mediator of RNA polymerase II transcription subunit 19 1 NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(0.995)PDHPGMGS(0.005)SQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR 237.58 9.565999999999998e-31 9475994100.0 806476.6 995650.7000000001 903041.4 1035218.0 1088507.9 1125102.6 1098359.3 521646.0 1092413.0 897728.9 True False 802134.6195935742 1028790.3316659422 1030181.7797434422 1166276.492656707 1227122.9289732047 1047326.9054686402 1045227.4645190125 560573.873384716 823202.4537342418 840435.0730176201 0.9544278259514725 1.2241163710267635 1.2257719993104619 1.3877056421136003 1.4601043773282383 1.246172297055816 1.2436742564372951 0.6670043783060483 0.9794955971774192 1.0 19.680776844221167 1.7580910506248537 24.999999999995207 0.8561782362295527 1.2603767280878608 0.5546143048671527 0.14979325026080434 5.748044202114657 7364.676514814473 0.07022792917379854 0.03894547391003253 57.291613130052745 -1.7580910506248537 0.40419849185830814 NRLENDGATALAEAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 NRLENDGATALAEAFR 16 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 ; 224.64 6.943600000000001e-15 622680000.0 299200.0 344210.0 328380.0 360210.0 323840.0 369120.0 425470.0 309040.0 526820.0 401140.0 False True 297589.1404442453 355666.82177066116 374613.0496698728 405812.5490668362 365079.10444993863 343603.60321501724 404888.39064676245 332102.134073323 396992.2700263302 375538.90176676743 0.7924322594655355 0.9470838309889715 0.997534604024939 1.0806138782364298 0.9721472335685613 0.9149614103851644 1.078152992251713 0.8843348385770662 1.057126886611834 1.0 18.518602837513267 4.718769486600991 2.7035493627025553 0.9913299661929026 0.75864112031883 0.501489810644963 0.06136977708027026 0.353428065830871 3.5716143208163222 0.014749165765171537 0.1804130798163844 52332.25954077059 -4.718769486600991 -0.23268884587407257 NRNEQESAVHPR ddPTM_BT-474_Trastuzumab_2h_R1 4 NRNEQESAVHPR 12 1 Q9UJU6-2;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ;;; 119.39 0.00031436 695770700.0 255623.0 319421.0 327512.0 379460.0 372676.0 359543.0 370664.0 311388.0 415450.0 325580.0 False True 254246.75417038496 330052.73489092826 373622.8428146636 427499.59709308995 420134.0795762887 334688.6386831842 352733.56624601386 334625.3537562253 313067.91424478695 304801.2056569382 0.8341395947644197 1.0828458968184376 1.2257918796921885 1.402552185355369 1.3783871972250683 1.098055494766924 1.1572577788390535 1.0978478678750865 1.027121640053987 1.0 18.217509083934207 1.501049416703 1.409491325097998 1.0013827570128073 1.1869676387178 0.14274412377691748 0.15077752445056755 0.7848198560485021 2.984761525328082 0.1442459971760656 0.048471207857956604 31.699281364850467 -1.501049416703 0.18558488170499277 NRPCLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 NRPCLSPK 8 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9 A0A0G2JQJ7 MAPT Microtubule-associated protein tau 1 NRPCLS(1)PK 67.214 0.036139 208490000.0 505270.0 480580.0 484730.0 438070.0 412430.0 558810.0 518580.0 466850.0 685390.0 521530.0 True False 502549.6824607745 496575.81478325557 552975.7706513106 493529.61708367104 464950.5158358696 520180.77999724715 493494.30423202034 501688.7176162662 516484.8182554685 488245.50889570324 1.0292970919434035 1.0170617153374202 1.1325772804383023 1.0108226457626188 0.95228836182739 1.0654082229527804 1.0107503197483345 1.027533706865975 1.0578383392069206 1.0 18.897247248044636 NRPDYVS(ph)EEEEDDEDFETAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NRPDYVSEEEEDDEDFETAVK 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NRPDYVS(1)EEEEDDEDFETAVK;NRPDYVS(1)EEEEDDEDFETAVK 264.99 4.4132e-37 150540000.0 423120.0 330670.0 281219.0 294479.0 278088.0 382930.0 341770.0 366170.0 583300.0 398830.0 True False 420841.9689330517 341676.15105576377 320812.1908006334 331760.01120638795 313500.8584432882 356458.9504202607 325237.27941181255 393495.4647735843 439553.5308195558 373376.3279444579 1.1271254694958985 0.9150985895029485 0.8592194169533861 0.888540559153336 0.8396377461024349 0.9546908139106405 0.8710709680025395 1.05388433953456 1.1772399531577755 1.0 18.510270938048812 1.6117024895905918 4.859659928994918 1.096229141805626 0.9166973218525213 0.40554360641344533 0.08602653354625565 0.13595539135274 7.038087576870164 0.04729911156230258 0.02185631768371403 40.89803945738964 -1.6117024895905918 -0.17953181995310474 NRPDYVS(ph)EEEEDDEDFETAVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NRPDYVSEEEEDDEDFETAVKK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NRPDYVS(1)EEEEDDEDFETAVKK;NRPDYVS(1)EEEEDDEDFETAVKK 259.7 1.6454000000000002e-37 165420000.0 193891.0 141726.0 122305.0 128682.0 121280.0 190044.0 178690.0 191834.0 342260.0 189149.0 True False 192847.11239931523 146443.2642348239 139524.48090588266 144973.12800593738 136724.28911712117 176906.705595456 170046.08203791088 206149.62719331388 257914.609049033 177077.34888139408 1.0890557918194477 0.827001675594947 0.7879295787251467 0.8186994492618025 0.772116196570679 0.9990363347598321 0.9602926806398444 1.164178414097403 1.4565081907894584 1.0 17.434020153796745 1.843597744931479 1.8811033704943378 1.2452374700889886 0.8650736958430303 0.5249036404259935 0.13837027982079156 0.235783728254105 1.5834868985469168 0.0887739217851105 0.03965155686137402 69.75859821171454 -1.843597744931479 -0.38016377424595826 NRPEDYQGGR ddPTM_BT-474_Trastuzumab_2h_R1 9 NRPEDYQGGR 10 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 ;;;;;;;; 229.53 1.4395e-09 7077346000.0 1307799.1 1505500.5 1442347.0 1418750.0 1542237.0 1569727.4000000001 1697163.9 1539309.2 1918777.0 1479160.0 False True 1300758.0549557412 1555610.1740482298 1645416.920495132 1598363.604532285 1738631.7403951313 1461215.8395788388 1615065.5983613005 1654180.2689577367 1445920.1186445302 1384758.742427411 0.9393391174231397 1.1233799263266069 1.1882336396091644 1.1542542072927704 1.25554848445831 1.0552132980344304 1.166315509610124 1.1945620693883785 1.0441675321073665 1.0 20.40120321605206 1.0686179790996626 5.530751543218164 1.000831855367401 1.1417691930574474 0.2348935717139201 0.08218536531106493 0.23566358340713262 12.214261588977536 0.07728082376439808 0.01949091121689306 11.711647141042103 -1.0686179790996626 0.14093733769004646 NRPLLDFVSMEELNDMDDYDS(ph)EDDNDWRPTVVK ddPTM_BT-474_Trastuzumab_2h_R1 5 NRPLLDFVSMEELNDMDDYDSEDDNDWRPTVVK 33 2 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 NRPLLDFVSMEELNDMDDYDS(1)EDDNDWRPTVVK;NRPLLDFVSMEELNDMDDYDS(1)EDDNDWRPTVVK;NRPLLDFVS(0.011)MEELNDMDDY(0.174)DS(0.815)EDDNDWRPT(0.001)VVK;NRPLLDFVSMEELNDMDDYDS(1)EDDNDWRPTVVK;NRPLLDFVSMEELNDMDDYDS(1)EDDNDWRPTVVK 303.18 2.4237e-90 2523726000.0 189300.6 179782.1 150544.6 150941.9 162082.2 214550.6 192352.5 226581.8 250574.1 214948.0 True False 188281.42660287383 185766.03851792545 171739.97112287921 170051.12906357835 182722.4074335346 199719.2220197873 183047.6747170924 243490.4844750674 188823.47057591716 201229.83461375858 0.9356536368688173 0.9231535615704579 0.8534518325899222 0.8450592298601012 0.9080284133028921 0.9924930982681035 0.9096448102163126 1.21001185009382 0.9383472929764404 1.0 17.61848469140136 1.7831420635197721 24.999999999975454 1.0714851954659914 0.9086399318205665 0.4094873476852854 0.07555582240157085 65.81147914390985 36917.607117012354 0.03405291696898355 0.018983115280084673 60.693483360241295 -1.7831420635197721 -0.16284526364542495 NRPLSDEELDAMFPEGYK ddPTM_BT-474_Trastuzumab_2h_R1 3 NRPLSDEELDAMFPEGYK 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;; 193.06 1.3016999999999998e-14 2164620000.0 2182210.0 1997420.0 1840990.0 1788540.0 1811060.0 2381130.0 2382360.0 2227340.0 3197610.0 2215610.0 False True 2170461.2238263222 2063902.9172341132 2100185.389828059 2014968.9806168615 2041687.756006379 2216528.0876771105 2267116.145301008 2393555.421003346 2409601.861278791 2074207.8729208473 1.0464048720295007 0.9950318597179834 1.0125240662936212 0.9714402336056284 0.9843216693278315 1.0686142486557297 1.0930033459512967 1.1539612071922192 1.1616973846915595 1.0 20.984129054701924 2.4481895572481447 2.4096670331759573 1.120026784611121 1.0007364607437441 0.5002190095293381 0.04629712461253452 0.2011573782533409 2.3777844511255473 0.017410458401118302 0.01431217404449356 280.6658397590659 -2.4481895572481447 -0.11929032386737681 NRPSSGSLIQVVTTEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NRPSSGSLIQVVTTEGR 17 1 P09417-2;P09417 P09417-2 QDPR Dihydropteridine reductase 0 137.24 6.960599999999998e-06 522130000.0 199200.0 208950.0 216140.0 228080.0 215570.0 232000.0 277130.0 243930.0 285580.0 239600.0 False True 198127.5293332005 215904.77443705755 246570.63327744155 256954.90461443082 243021.56171650556 215962.3860692565 263724.1631605922 262133.295251442 215202.6355759451 224308.52286811947 0.8832813252026457 0.962534867941675 1.0992477241821565 1.1455423152400925 1.0834254472773122 0.9627917089723335 1.1757206538052363 1.1686283334207561 0.9594046308372861 1.0 17.775124912810032 4.395380682636172 3.2480574146976897 1.0888323255050323 0.8938988768687408 0.3926521315991365 0.07633977710006527 0.22053193043806832 4.445943181615171 0.01942613657258938 0.0714839505933242 24853.106601898016 -4.395380682636172 -0.19493344863629147 NRPT(ph)SISWDGLDSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 NRPT(0.896)S(0.101)IS(0.003)WDGLDSGK 161.08 1.0652e-05 190680000.0 323970.0 216950.0 206110.0 172520.0 178690.0 278660.0 238090.0 247000.0 360060.0 264500.0 True False 322225.78151645046 224171.04960095565 235128.4964597644 194361.01431112565 201445.1123213917 259396.89009508197 226572.6771078751 265432.3942405861 271328.0375568134 247619.38355015722 1.301294659960177 0.905304933672723 0.949556101338639 0.7849184160163145 0.8135272345534591 1.0475629426746356 0.9150038008312101 1.0719370609644567 1.0957463574407689 1.0 17.917764727022636 1.700109605059832 6.945732133653756 1.0622763811622515 0.9482830799190036 0.08902198502719061 0.1369315110437727 0.2803817227843152 29.798387273990894 0.06858242324931234 0.03546509959820379 50.131373670620896 -1.700109605059832 -0.11399330124324791 NRPTSISWDGLDS(ph)GK ddPTM_BT-474_Trastuzumab_2h_R1 1 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 NRPT(0.001)S(0.024)IS(0.115)WDGLDS(0.86)GK 173.31 2.5701e-06 183480000.0 364860.0 260880.0 218820.0 206800.0 206210.0 303930.0 292400.0 294640.0 429610.0 271690.0 True False 362895.63429975644 269563.2330947095 249627.95398246433 232980.8587963183 232469.6211975719 282920.0344742639 278255.4949235275 316627.5329516047 323738.3719790662 254350.51159448834 1.4267540962462142 1.0598100684164333 0.9814328755133263 0.9159834487290526 0.913973475973183 1.1123234339128203 1.0939844122159696 1.2448472423613788 1.2728040920759112 1.0 17.956458470442303 2.025433310103486 2.7562355483385677 1.1957178193073446 1.0495088937546422 0.06827909126332887 0.15319682616496746 0.5509209429457721 8.087440342282045 0.07704731228845874 0.04529401600390467 106.03111053860619 -2.025433310103486 -0.14620892555270237 NRPTSISWDGLDSGK ddPTM_BT-474_Trastuzumab_2h_R1 5 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ;;;; 229.68 3.9273000000000003e-13 12399850000.0 14524770.0 11663950.0 10783690.0 10057200.0 9554050.0 14159700.0 13608420.0 13373780.0 18249000.0 12629600.0 False True 14446570.252173657 12052177.524743335 12301939.818486236 11330440.488812055 10770701.63620902 13180873.267348502 12950128.735387255 14371799.374278817 13751778.47407179 11823568.115255434 1.2218452256839352 1.0193350608935838 1.0404591658429725 0.9582928248362592 0.9109518828171721 1.11479657738359 1.0952809345833825 1.215521341289142 1.163081934321372 1.0 23.495162141805633 2.50237042370058 22.842918592585818 1.1386359365987946 1.024824367218085 0.17150164003112067 0.09170263807436334 351.34615676791054 317862.5301486198 0.030145021254324073 0.028274467097247395 317.95848843995213 -2.50237042370058 -0.11381156938070958 NRS(ph)AEEGELAESK ddPTM_BT-474_Trastuzumab_2h_R1 5 NRSAEEGELAESK 13 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 NRS(1)AEEGELAESK;NRS(0.697)AEEGELAES(0.303)K;NRS(1)AEEGELAESK;NRS(1)AEEGELAESK;NRS(1)AEEGELAESK 233.79 7.3083e-17 1815430000.0 2811590.0 2463751.0 2197753.0 2196061.0 2217117.0 2958540.0 2582492.0 2396390.0 3576960.0 2651040.0 True False 2796452.7118370133 2545755.462666068 2507177.519188478 2474082.0974327936 2499453.708067979 2754023.0934540466 2457566.9958825246 2575220.790421857 2695466.136808361 2481848.357530468 1.1267621179803218 1.025749802537972 1.0102057652237921 0.996870775736918 1.0070936447362275 1.1096661426141292 0.9902164201232244 1.0376221345708236 1.0860720513522633 1.0 21.242983537926104 4.739868428975801 23.680661180499218 1.0292266590977537 1.1267621857520358 0.37824742617335205 0.037495394836034944 56.53272454894625 1023392.411936163 0.008702752381301379 0.054107499078041035 54937.441375414885 -4.739868428975801 0.09753552665428211 NRT(ph)PSDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 NRTPSDVK 8 1 P39687;H0YN26;H7BZ09;O95626 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D 1 NRT(1)PSDVK;NRT(0.981)PS(0.019)DVK;NRT(1)PSDVK 133.42 0.0014877 1860820000.0 1807080.0 1379900.0 1306530.0 1188900.0 1313040.0 1520910.0 1667000.0 1621910.0 2601270.0 1625530.0 True False 1797350.8820654613 1425829.1373328366 1490478.0674376586 1339414.6180993377 1480247.8610021824 1415773.0715370383 1586360.8414415866 1742945.1600921007 1960221.8637321852 1521787.2837137512 1.1810789203595051 0.9369437848457115 0.9794260231957741 0.8801588976552929 0.9727035288334145 0.9303357221398268 1.0424327094981705 1.1453277200730962 1.288105035907833 1.0 20.53733528153058 1.8510110678491174 2.9562628437153387 1.163277920133637 0.9738384472324393 0.3483777244490929 0.09898516094506185 0.24556298689756664 3.8093909312854706 0.05156302400537636 0.02640033360759991 70.95958515450894 -1.8510110678491174 -0.18943947290119767 NRTPSDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 NRTPSDVK 8 1 P39687;H0YN26;H7BZ09;O95626 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D 0 ;; 134.26 0.00080641 663580000.0 716890.0 988870.0 904410.0 894440.0 862900.0 878880.0 1004250.0 839510.0 1342480.0 919960.0 False True 713030.3438939676 1021783.9401654606 1031743.0667273575 1007676.0122910015 972785.2001909942 818125.0942609846 955670.5908924505 902158.4991454027 1011643.7923103662 861247.3651826176 0.8279042383401402 1.186400076764012 1.1979636843458885 1.1700192685957715 1.1295073163849114 0.9499304466232075 1.1096354305708809 1.0475021876602322 1.174626284163852 1.0 19.716068138617995 NRVPS(ph)AGDVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 NRVPSAGDVEK 11 1 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 1 NRVPS(1)AGDVEK;NRVPS(1)AGDVEK;NRVPS(1)AGDVEK;NRVPS(1)AGDVEK 142.91 2.267e-05 3590090000.0 4996710.0 3916320.0 3544530.0 3252720.0 3550710.0 5176790.0 4868570.0 4769270.0 7365430.0 4904260.0 True False 4969808.26854667 4046672.3437345675 4043569.014392937 3664514.0184911047 4002871.8717929884 4818930.692152872 4633058.669356496 5125177.145262343 5550318.468205518 4591265.928051767 1.0824483587809803 0.8813848744874838 0.8807089542967866 0.7981489366803209 0.8718449191400999 1.0495864904513843 1.0091026618713987 1.11628845411643 1.2088862974139924 1.0 22.130460565297483 2.417290475468938 1.747426650932924 1.1055415137251274 0.8961869679176968 0.4887713019871065 0.08784094747107621 0.28989758874942956 1.8010640977686045 0.0407509639524038 0.03042479530075936 261.39090685234527 -2.417290475468938 -0.20935454580743063 NRVPSAGDVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 NRVPSAGDVEK 11 1 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 0 ;;; 135.94 9.9971e-05 1566260000.0 1641000.0 1543130.0 1438080.0 1401180.0 1443410.0 1869440.0 1957950.0 1783210.0 2810900.0 1921600.0 False True 1632165.0383322404 1594492.1492082158 1640549.1639845602 1578569.2443337764 1627219.7077386533 1740210.0129884104 1863236.4784046528 1916282.1851569044 2118191.3591302726 1798961.8428354722 0.9072816329220572 0.8863401720044395 0.9119421684891179 0.877489008797252 0.9045326415450125 0.9673412584702414 1.0357287375633675 1.0652155813024446 1.1774520774668795 1.0 20.778733155726883 2.288946485091157 1.5243855536118232 1.0890747089556392 0.8947542027330988 0.7951978791201022 0.04156726518292487 0.15775198189956507 0.7304178384609513 0.021478701877133778 0.013550308151028645 194.51203840028623 -2.288946485091157 -0.19432050622254038 NS(ph)CNVGGGGGGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSCNVGGGGGGFK 13 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 NS(1)CNVGGGGGGFK;NS(1)CNVGGGGGGFK 170.16 1.022e-06 117620000.0 523120.0 286650.0 236196.0 240427.0 249930.0 316870.0 284280.0 336080.0 432780.0 344270.0 True False 520303.5800440962 296190.9719664158 269450.3437475643 270865.0335484643 281757.1040488298 294965.5227317471 270528.2903449395 361159.99617966055 326127.16795488953 322298.3938556244 1.614353623732824 0.9189961154416935 0.8360275722263334 0.840416951223778 0.8742119396817245 0.9151938959518326 0.8393721330988834 1.1205764690885938 1.011879594103656 1.0 18.29803747331426 4.739087447003721 24.810266489142766 0.9293050982841121 1.6143538537816442 0.8470629516256498 0.08742508410958112 15.744613676239746 741252.0114679593 0.0234916126859737 0.1394584705544879 54838.7373887797 -4.739087447003721 0.6850487554975321 NS(ph)EEEEEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSEEEEEEK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 NS(1)EEEEEEK;NS(1)EEEEEEK 159.0 6.9633e-05 350460000.0 552730.0 387090.0 281060.0 272470.0 278860.0 310880.0 342580.0 371640.0 514470.0 351510.0 True False 549754.1630940762 399974.0566491539 320630.8049826858 306964.6740630213 314371.1680672854 289389.59733280423 326008.096617312 399373.66394968145 387685.762044808 329076.33085714874 1.6705977049826874 1.215444622247176 0.9743356629373349 0.9328069061164839 0.9553138241466329 0.8793996109626845 0.9906762232584614 1.213620143719934 1.178102846336589 1.0 18.328062737352962 4.6793372890770355 2.522979657347438 1.0226318676892927 1.765304855366817 0.7979508554526422 0.09982552594171676 0.21547185041072736 1.9035656833981558 0.02938771788816003 0.32266602558473884 47790.028451677324 -4.6793372890770355 0.7426729876775242 NS(ph)EEEEEEKKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSEEEEEEKKK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 NS(1)EEEEEEKKK;NS(1)EEEEEEKKK 183.01 2.8869e-06 1767610000.0 3013500.0 1304610.0 1042400.0 934340.0 1070880.0 1991380.0 1897150.0 1956240.0 4326300.0 1677480.0 True False 2997275.6508313273 1348033.1551966013 1189160.8592967747 1052627.3481999605 1207250.2203969546 1853720.5878042963 1805377.6066832077 2102224.562385442 3260141.3344499283 1570421.7902371176 1.9085800193709548 0.858389232483244 0.7572238660272433 0.6702832033685833 0.7687426574835492 1.18039662931855 1.1496131917595298 1.3386369034449197 2.075965421976016 1.0 20.582720665356618 1.7724159129586343 2.058306910771472 1.5561934177653773 0.9817132742425426 0.18857266462976918 0.4130249084538776 0.4335697989910288 3.6479380663733934 0.27233135499719546 0.1174975956081212 59.21284293102247 -1.7724159129586343 -0.5744801435228347 NS(ph)LES(ph)ISSIDRELSPEGPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLESISSIDRELSPEGPGK 20 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 2 NS(1)LES(0.528)IS(0.105)S(0.362)IDRELS(0.005)PEGPGK 81.53399999999998 0.0028418 41687000.0 137560.0 104540.0 108130.0 101570.0 100100.0 151300.0 137480.0 129730.0 199870.0 143150.0 True False 136819.3922443529 108019.55070423553 123353.76411719147 114428.75158579333 112847.14166081665 140840.98712189033 130829.56717539846 139411.1113555921 150614.716620786 134014.04444311914 1.0209332373550182 0.806031570445464 0.9204540063675766 0.8538564152831117 0.842054593081947 1.0509419942300808 0.9762377347765794 1.0402723978288984 1.1238726302653512 1.0 17.0320246750206 2.7323766139918453 24.72286529227714 1.035500665929271 0.8839073021103935 0.5724506651368224 0.06455564183769195 298.48293560242143 1193294.1704568705 0.019741720421730485 0.01904258896747867 539.9786813638481 -2.7323766139918453 -0.15159336381887745 NS(ph)LESISS(ph)IDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSLESISSIDR 11 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 2 NS(1)LES(0.008)IS(0.125)S(0.867)IDR;NS(1)LES(0.013)IS(0.343)S(0.644)IDR 119.51 0.00084345 226630000.0 818120.0 697580.0 591230.0 648590.0 603170.0 816420.0 709240.0 649470.0 802020.0 679230.0 True False 813715.3328216779 720798.5286039844 674470.0449367155 730701.4274985695 679980.124231315 759982.8070459596 674931.3516400915 697936.7493418358 604372.9175174006 635880.9598819404 1.279666139040796 1.1335431850920807 1.0606860206381077 1.1491166957322227 1.0693512892060208 1.1951652195830182 1.0614114814279096 1.0975902619751612 0.95044977857115 1.0 19.278397185446202 7.999999999999466 0.1357293546079693 0.9632619964944449 1.7927062867810264 0.505717876499256 0.06335981182522678 70.89198319541818 0.6448172224029146 0.2891443126714888 11.351467772461618 99999999.9998771 -7.999999999999466 0.8294442902865815 NS(ph)LESISS(ph)IDRELSPEGPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLESISSIDRELSPEGPGK 20 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 2 NS(1)LES(0.071)IS(0.046)S(0.883)IDRELSPEGPGK 157.09 6.2062e-09 48382000.0 152440.0 112050.0 92549.0 109020.0 107670.0 170340.0 161750.0 138720.0 227250.0 169430.0 True False 151619.27997767628 115779.51651434458 105579.09474967113 122821.92082192769 121381.13628991121 158564.79673722907 153925.53455499513 149071.9908058871 171247.28249398916 158616.83234367927 0.9558839231460555 0.7299320936095991 0.6656235229872081 0.7743309395802723 0.7652475118587131 0.9996719414599237 0.9704237077530373 0.9398245356639633 1.0796286873447527 1.0 17.275186351722127 2.739907299780006 24.91225087201752 0.9874357565825598 0.7690522437625034 0.6715856478161495 0.07651121787827556 70.57813009963938 1305633.0122360196 0.024122647001407798 0.02434706481932419 549.4235867965097 -2.739907299780006 -0.2183835128200564 NS(ph)LESISSIDR ddPTM_BT-474_Trastuzumab_2h_R1 6 NSLESISSIDR 11 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 NS(0.999)LES(0.001)ISSIDR;NS(0.999)LES(0.001)ISSIDR;NS(0.993)LES(0.007)ISSIDR;NS(0.87)LES(0.13)ISSIDR;NS(0.998)LES(0.002)ISSIDR;NS(1)LESISSIDR 209.21 1.7753e-08 5577190000.0 1980785.0 2057938.0 2072698.0 1998042.0 1765404.0 2201423.0 2284894.0 1992693.0 2101463.0 2123852.0 True False 1970120.6736459 2126435.2222802076 2364515.8621860226 2250993.912336141 1990217.7350306893 2049243.8096023316 2174364.9480772857 2141397.870350026 1583585.601811511 1988305.9470388195 0.9908538857312162 1.069470835435112 1.1892112809437057 1.1321164711540204 1.0009615160054803 1.0306481317195006 1.09357664564428 1.0769961602434506 0.7964496631768074 1.0 20.92310833543716 1.260891528845658 24.99793538528999 0.8982248834882689 1.0759304256782098 0.4842403385063504 0.07208945723523218 161.6216422056036 180925.1421870222 0.04771922224209996 0.01739635250625254 18.234402156029983 -1.260891528845658 0.17770554218994095 NS(ph)LIELPDDYSCLLNQASHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLIELPDDYSCLLNQASHFR 21 0 Q8IWV7 Q8IWV7 UBR1 E3 ubiquitin-protein ligase UBR1 1 NS(1)LIELPDDYSCLLNQASHFR 114.91 0.00010699 17200000.0 29310.0 29085.0 25936.0 22548.0 23673.0 30116.0 27065.0 27066.0 36830.0 29039.0 True False 29152.198216647143 30053.076642746208 29587.5633602467 25402.57448810149 26687.616229135954 28034.151805438505 25755.762551659598 29085.80235836317 27753.739996715623 27185.706158461293 1.0723355150947145 1.1054734597501883 1.0883500023058201 0.934409220052398 0.9816782419988633 1.0312092554091385 0.9474009025748026 1.0698932074387366 1.0208945772805513 1.0 14.730560682692953 3.831376033680811 10.449048179095369 1.0025273774735102 1.090702139939564 0.5440320777699356 0.037916862905392444 0.42902587746589105 46.24887128665063 0.010083157940819843 0.01820011990486676 6782.284972893796 -3.831376033680811 0.08817476246605382 NS(ph)PATLFEVPDTW ddPTM_BT-474_Trastuzumab_2h_R1 3 NSPATLFEVPDTW 13 0 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-2;O95453-3;O95453;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 NS(0.881)PAT(0.119)LFEVPDTW;NS(0.883)PAT(0.117)LFEVPDTW;NS(0.5)PAT(0.5)LFEVPDTW 90.108 0.0074917 67425000.0 135017.0 133954.0 119028.0 114037.0 124018.0 149106.0 145522.0 143372.0 162610.0 131528.0 True False 134290.08347379908 138412.57791309687 135786.1077900774 128474.07250752297 139810.95718772375 138798.65317776962 138482.54491197513 154071.14666826435 122536.94436236577 123133.77043321384 1.0906031952187827 1.124082998726739 1.1027527810798745 1.0433699224471134 1.1354395848988916 1.1272184120525426 1.1246512181407315 1.2512501332997883 0.9951530269174063 1.0 16.909866961319526 NS(ph)PEDKR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSPEDKR 7 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 NS(1)PEDKR;NS(1)PEDKR;NS(1)PEDKR;NS(1)PEDKR 96.009 0.0079913 2143426100.0 2317304.0 1568533.0 1236767.0 1192097.0 1329666.0 1164421.6 1723256.0 1798374.0 2911444.0 1810568.0 True False 2304827.8927406794 1620740.6727067782 1410893.0434285277 1343016.3579715411 1498991.0835521615 1083927.8755456114 1639895.5238027978 1932577.7998381383 2193957.6375508504 1695016.0001347489 1.3597676320208496 0.9561801614721831 0.8323774190428679 0.7923325548931546 0.8843521733322848 0.6394794358634032 0.967480851904897 1.140153131111744 1.2943580694084522 1.0 20.692867461096476 1.772914419925621 3.829355014935862 1.1655585012392382 0.8968261558124575 0.23543973331193568 0.18579322232297804 0.281537428372742 8.143910719147199 0.09984737396228544 0.051060684481604425 59.28084969520418 -1.772914419925621 -0.2687323454267807 NS(ph)PEDLGLSLTGDSCK ddPTM_BT-474_Trastuzumab_2h_R1 7 NSPEDLGLSLTGDSCK 16 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK 346.73 4.488899999999998e-87 7068680000.0 7444300.0 5398380.0 4835070.0 4654620.0 4536440.0 6734190.0 6656950.0 6347900.0 10052040.0 6339690.0 True False 7404220.715939486 5578061.814910384 5515805.828818176 5243894.414751053 5114128.744413528 6268671.295878144 6334927.896481451 6821612.531983069 7574849.432435122 5935085.556518317 1.2475339479828838 0.9398452240986105 0.9293557399118435 0.8835415032883307 0.8616773415838701 1.056205717033592 1.0673692630300837 1.1493705468982005 1.2762831066716307 1.0 22.500837396339634 2.1836793470188143 2.0057669664682587 1.1522105959279114 0.9653049131297369 0.2585997861765065 0.11931392439666405 0.4024838973867118 3.221778410551948 0.060099324791200455 0.03729460135308602 152.64386254675622 -2.1836793470188143 -0.18690568279817454 NS(ph)PFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPFTR 6 0 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 NS(0.998)PFT(0.002)R 98.582 0.041718 408120000.0 543770.0 522910.0 487650.0 491500.0 443810.0 523890.0 485910.0 483710.0 693340.0 506340.0 True False 540842.4027385267 540314.7432442295 556306.8812702154 553723.8496053696 500326.5728320381 487674.7174044087 462404.67694353993 519806.89642961026 522475.6472800108 474024.94770051603 1.1409576760930846 1.1398445289963823 1.173581441164325 1.1681322940732783 1.0554857402740312 1.0287954669265982 0.9754859510805375 1.0965813064295062 1.102211286166536 1.0 18.854603463890896 3.2081392084520433 6.799268609355419 1.0454306785861698 1.1558662050737274 0.6831208720153465 0.037542592564363 0.11153697965820004 16.51600272455803 0.011496201733459128 0.01406222138084126 1614.876105141581 -3.2081392084520433 0.11043552648755761 NS(ph)PGLGSLVSPHGPHMPPAASIPPPPGLGGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPGLGSLVSPHGPHMPPAASIPPPPGLGGVK 32 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 NS(0.995)PGLGS(0.003)LVS(0.002)PHGPHMPPAASIPPPPGLGGVK 149.96 1.9589e-10 155480000.0 25215.0 24777.0 30310.0 25484.0 27423.0 41714.0 34828.0 15734.0 47142.0 39873.0 True False 25079.245241649853 25601.687466987198 34577.38454075718 28710.27178706661 30915.15650114456 38830.40936419385 33143.23658411975 16908.15097563312 35524.485770436295 37328.271003007234 0.671856600045296 0.6858524860399957 0.9263055483596216 0.7691294296688335 0.8281968510851729 1.0402413056062951 0.8878856612847049 0.45295832143607645 0.9516777717235919 1.0 15.187981065978931 4.344177628456906 9.092584746258236 0.8222688388088625 0.6759429596455749 0.14130891721861527 0.1581981847529812 0.6255315729942873 49.0398897891539 0.04164722045397232 0.11447226933756949 22089.080019011315 -4.344177628456906 -0.14632587916328754 NS(ph)PGSQVASNPR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSPGSQVASNPR 12 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 1 NS(1)PGSQVASNPR;NS(1)PGSQVASNPR;NS(1)PGSQVASNPR;NS(1)PGSQVASNPR 260.78 2.6023000000000003e-21 3453380000.0 1625300.0 1540610.0 1301980.0 1403260.0 1474840.0 1717660.0 1708020.0 1670620.0 2102170.0 1670790.0 True False 1616549.5653878069 1591888.2725315888 1485287.46698697 1580912.5721205096 1662652.1319384498 1598922.2071367211 1625396.5473299723 1795290.1476364713 1584118.3711348257 1564158.751764716 1.0334945628530239 1.0177280731483218 0.9495759080152434 1.0107110741393042 1.0629689154394408 1.0222250173345795 1.0391506268121227 1.1477672235065577 1.0127606097191801 1.0 20.57695551340215 3.2989463836756 4.818379523910413 1.0594161704761276 0.9988777994616905 0.16969714236212052 0.043983255301398703 0.27830765907602323 12.89719183947284 0.013136161587485614 0.0176836221649404 1990.4275932919534 -3.2989463836756 -0.06053837101443704 NS(ph)PLDCGSASPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPLDCGSASPNK 13 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 NS(1)PLDCGSASPNK;NS(1)PLDCGSASPNK 264.72 3.0574e-24 987280000.0 1461830.0 1105810.0 1042660.0 879730.0 974760.0 1326880.0 1340250.0 1244440.0 1757720.0 1206100.0 True False 1453959.6697045828 1142616.2173737378 1189457.4650368167 991103.727799251 1098889.9081448312 1235155.9087395496 1275416.9872478049 1337306.431938278 1324553.4582412974 1129125.6654058394 1.2876863171664679 1.0119477861333084 1.0534323162420476 0.8777621111313775 0.9732219732600439 1.0939047322917772 1.1295615947135382 1.1843734253065734 1.1730788687415192 1.0 20.1067746283038 2.4671031830515804 3.962783164175167 1.140636993049014 1.030641368438614 0.09812608008835622 0.10801091157102992 0.3846589043786776 13.774311001875184 0.038554869382745494 0.03328070815044461 293.15896723287597 -2.4671031830515804 -0.10999562461039991 NS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPMAQTPPCHLPNIPGVTSPGTLIEDSK 29 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 NS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;NS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK 134.37 1.4111e-05 157346000.0 240340.0 146789.0 138879.0 113829.0 144805.0 225430.0 207125.0 200554.0 279760.0 199636.0 True False 239046.03614428412 151674.7831291755 158431.95604209235 128239.73972884958 163245.0584235217 209846.55470514027 197105.57245566222 215520.35787257666 210816.8965919405 186895.05956302164 1.279038818378594 0.8115505219014645 0.8477054257748775 0.6861590671721673 0.8734583932031382 1.1228041832447653 1.0546323317294406 1.1531624130487113 1.1279960908803601 1.0 17.5118689074143 2.7407960133158062 24.58931444553138 1.1022577602606642 0.879952861983889 0.2908361929550006 0.14798220397345452 181.512011420754 1996634.1207494952 0.046090743197877114 0.046783409956836185 550.5490445977673 -2.7407960133158062 -0.22230489827677524 NS(ph)PPFLK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSPPFLK 7 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 NS(1)PPFLK;NS(1)PPFLK;NS(1)PPFLK 91.658 0.017037 1144630000.0 3189450.0 2655160.0 2466880.0 2280460.0 2327300.0 3452010.0 3429850.0 2996810.0 4381020.0 3009180.0 True False 3172278.355581206 2743535.3955218834 2814195.2614946603 2569166.002179167 2623667.8600121723 3213380.6738574742 3263935.0522006154 3220447.1796928397 3301376.3236603625 2817131.556111384 1.1260668138480714 0.9738754974257968 0.9989577005694483 0.9119794198484307 0.9313259987168442 1.1406569447871475 1.1586022829214175 1.143165349415975 1.1718928484182696 1.0 21.42579550645478 2.7269798364260174 24.316210641106476 1.1354871843544185 0.983968273533957 0.4758322637204174 0.06983859195970644 399.68585806749627 839220.0465665959 0.022064706833510857 0.020978368421783272 533.3101342059771 -2.7269798364260174 -0.15151891082046154 NS(ph)PQALR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPQALR 7 0 Q7L7X3-3;Q7L7X3 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 NS(1)PQALR 90.827 0.017678 231690000.0 334240.0 287410.0 306670.0 272270.0 324520.0 411700.0 335250.0 335590.0 474740.0 327710.0 True False 332440.4889775548 296976.26810698607 349846.47037657583 306739.35408352833 365845.6984192623 383240.14803755586 319032.6767206309 360633.4298914908 357746.68819008354 306795.26723335346 1.083590669358974 0.9679949458969362 1.140325512617758 0.9998177509375248 1.1924750395220214 1.2491722949104596 1.0398878691892253 1.175485636214809 1.1660762938626938 1.0 18.22691670176385 4.222014698570155 24.987654878185314 1.1276577529090437 1.0257928000503047 0.1658560408470776 0.08361539679051297 324.64662543607926 490283.4224990192 0.02018411478734331 0.0437924955518049 16673.036410019122 -4.222014698570155 -0.10186495285873898 NS(ph)PQALRR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPQALRR 8 1 Q7L7X3-3;Q7L7X3 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 NS(1)PQALRR;NS(1)PQALRR 77.387 0.020424 442750000.0 118956.0 114668.0 120260.0 131616.0 136034.0 133174.0 131033.0 124660.0 208456.0 134835.0 True False 118315.55411325421 118484.6550617301 137191.5626813414 148278.57210510754 153357.1235633118 123967.9948378759 124694.43319533029 133962.76221065366 157084.81196729167 126229.71486194881 0.937303504508824 0.9386431332060831 1.0868404704184036 1.1746724791961423 1.2149050937097567 0.982082507066213 0.9878373989175403 1.0612617033727922 1.2444360833666426 1.0 16.945692039573235 4.23516925926599 7.140094048031178 1.0923127229765084 0.9370433272862795 0.33446708738145225 0.08804096224476544 0.1437133409700138 41.61649709825818 0.02285821605058742 0.05540482817105787 17185.780447147503 -4.23516925926599 -0.1552693956902289 NS(ph)PSAASTSSNDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPSAASTSSNDSK 14 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 NS(0.665)PS(0.335)AASTSSNDSK;NS(0.999)PS(0.001)AASTSSNDSK 209.9 9.5257e-08 0.0 345670.0 256930.0 223823.0 192146.0 232550.0 267160.0 296960.0 290870.0 376660.0 270830.0 True False 343808.951127547 265481.75973253505 255335.33289560836 216471.6638988268 262163.8640681606 248691.85802699428 282594.9103026358 312576.1964079325 283837.18998541683 253545.39753077162 1.3560054904401115 1.047077810593327 1.0070596247546537 0.8537787157921282 1.0339918082573083 0.9808573156876639 1.1145732206333525 1.2328214175924712 1.119472854761518 1.0 17.951884560634706 2.050399061212137 7.328357360964835 1.1508087140174543 1.0359572321724753 0.04403000023998793 0.13041620429425457 0.43685533093074086 52.4939862716787 0.05014079432070515 0.03678319736474735 112.30499199100231 -2.050399061212137 -0.11485148184497906 NS(ph)PVT(ph)KTPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPVTKTPPR 10 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 NS(1)PVT(0.541)KT(0.459)PPR;NS(1)PVT(0.749)KT(0.251)PPR 112.15 0.0038003 6984900000.0 2081980.0 1489870.0 1379350.0 1524770.0 1666730.0 2293720.0 2281420.0 2216170.0 3467000.0 2027960.0 True False 2070770.851009723 1539459.4223045665 1573550.490474873 1717805.7256618114 1878978.1860173107 2135160.5352360983 2171058.9987292546 2381551.858883238 2612604.305419853 1898533.856576093 1.09072105500623 0.8108675107226697 0.8288240344118432 0.904806474591812 0.9896995934567899 1.1246365335231625 1.1435450525199726 1.2544163226976857 1.3761167842071296 1.0 20.85645429610783 2.6750695689777495 1.4555269313579238 1.2249266077918464 0.8942893877392283 0.5681682010022159 0.11332216310122149 0.2599692454692104 1.1137691823783735 0.04800165032292639 0.04344648748517844 473.2270584186542 -2.6750695689777495 -0.3306372200526181 NS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 5 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 NS(0.886)PVT(0.572)KT(0.475)PPRDLPT(0.068)IPGVTSPSSDEPPMEASQSHLR;NS(0.992)PVT(0.529)KT(0.453)PPRDLPT(0.026)IPGVTSPSSDEPPMEASQSHLR;NS(0.992)PVT(0.504)KT(0.504)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.994)PVT(0.503)KT(0.503)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR;NS(0.998)PVT(0.541)KT(0.456)PPRDLPT(0.004)IPGVTSPSSDEPPMEASQSHLR 121.43 1.0804e-07 3267430000.0 244902.3 266190.0 258979.0 329797.0 322970.0 373354.0 414359.0 385293.0 662516.0 418787.0 True False 243583.77322800344 275049.973234747 295440.9921141787 371549.2663851521 364098.3151068327 347544.91676078085 394314.8721649043 414045.5201382112 499247.8090595719 392059.65511841123 0.6212926274049683 0.7015513319055373 0.7535613222557893 0.9476855410509799 0.92868090443243 0.8864592727752467 1.0057522293279884 1.0560778563485695 1.273397562186773 1.0 18.580713663459637 4.031469053101414 0.4176583014095244 1.1148534866483204 0.4334862278532691 0.7855382875270714 0.08332068111667407 1.37046320557907 0.2894518048029317 0.0713630434661456 0.44271947380244697 10751.499847680212 -4.031469053101414 -0.6813672587950512 NS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPVTK 6 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 NS(1)PVTK;NS(0.995)PVT(0.005)K 111.31 0.029328 5231600000.0 11009600.0 7697000.0 6818900.0 6847800.0 7516100.0 11617800.0 9076000.0 10040700.0 13838600.0 8837900.0 True False 10950325.53688154 7953189.992065255 7778941.849058696 7714730.777879255 8473230.783585036 10814688.831359535 8636959.206313042 10789988.01964152 10428262.457739588 8273857.655493143 1.3234848836940587 0.9612432704574037 0.94018318575908 0.9324224683461075 1.024096755877777 1.3070914779612501 1.0438853997661937 1.3041060734804737 1.2603869793210791 1.0 22.980128706800457 2.769680554758942 20.667616910493106 1.1984723025923534 1.0210074545400991 0.20525337803430532 0.1412558621288469 108.28093838632726 71911.22924216226 0.04199428530841296 0.044527579741611464 588.4106907462144 -2.769680554758942 -0.17746484805225426 NS(ph)PVTKT(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 5 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 NS(1)PVT(0.427)KT(0.571)PPRDLPT(0.003)IPGVTSPSSDEPPMEASQSHLR;NS(1)PVT(0.063)KT(0.937)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.999)PVT(0.072)KT(0.909)PPRDLPT(0.02)IPGVTSPSSDEPPMEASQSHLR;NS(0.993)PVT(0.448)KT(0.544)PPRDLPT(0.014)IPGVTSPSSDEPPMEASQSHLR;NS(0.986)PVT(0.499)KT(0.514)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR 260.75 6.915899999999997e-62 7934360000.0 911050.0 870350.0 907993.0 1177450.0 1098730.0 1361140.0 1517080.0 1225950.0 2395550.0 1434680.0 True False 906145.0080271699 899319.0736123157 1035830.5219833623 1326515.049273331 1238646.752817073 1267047.5955789143 1443693.0445916052 1317436.6142479605 1805198.8012254175 1343117.4941086546 0.6746580340155001 0.6695758766876453 0.7712136328555381 0.9876388738080271 0.922217719782652 0.9433631838886715 1.0748821684804994 0.9808796475562721 1.3440363997517717 1.0 20.35715408462825 3.9294006004805815 0.4919554965866341 1.1091408342989844 0.5034298241969593 0.7039399532576436 0.10341483172113866 1.2075872517710269 0.395200342015685 0.07271124203298748 0.3925516085522933 8499.641346582079 -3.9294006004805815 -0.6057110101020251 NS(ph)PYRR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPYRR 6 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;Q9UQ88-9;A0A087X1I0;A0A087WYI9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2;E9PFJ2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 NS(1)PYRR 56.258 0.093442 32625000.0 74369.0 70210.0 62394.0 64588.0 71904.0 65881.0 81786.0 76604.0 101510.0 82110.0 True False 73968.60556717275 72546.89740715883 71178.53286162994 72764.8341776433 81060.54819160186 61326.80153719269 77829.6987271396 82320.57946723021 76494.22066431174 76869.66950209234 0.962259966073607 0.9437649189474421 0.9259638206157828 0.9466000653959191 1.054519275504306 0.7978023313281374 1.012489051029693 1.07091106284761 0.9951157740079736 1.0 16.23012684522 2.021926753487551 24.999918086675386 1.032841059685993 0.9405779379709865 0.2893513252349924 0.06168360025853448 254.72532729875155 290425.2928096376 0.022097933014640664 0.016319335499373543 105.178446875739 -2.021926753487551 -0.09226312171500639 NS(ph)RDGDPLPSSLSCK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSRDGDPLPSSLSCK 15 1 P53602;H3BP35 P53602 MVD Diphosphomevalonate decarboxylase 1 NS(1)RDGDPLPSSLSCK;NS(1)RDGDPLPSSLSCK 235.44 6.7389e-18 2379800000.0 1389100.0 1180980.0 1144930.0 1039490.0 973550.0 1561270.0 1506000.0 1408440.0 1893450.0 1490000.0 True False 1381621.2399435178 1220288.2053825129 1306126.192090041 1171089.3274186898 1097525.821817063 1453343.0797342588 1433149.026521316 1513544.9447134037 1426834.6184301171 1394906.9243468225 0.9904755764191752 0.8748169387387073 0.9363536514822637 0.8395465725909008 0.7868093581448018 1.0418925122296596 1.0274155225033388 1.0850508505591758 1.0228887630608365 1.0 20.411737430258135 2.711020013214 23.522771135281356 1.0436385768610337 0.8852624259634225 0.6512017675913185 0.05467016591252916 210.17964279097507 179516.55676447594 0.017984753653630087 0.016961302631257832 514.067340353699 -2.711020013214 -0.15837615089761115 NS(ph)RFAQDFLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSRFAQDFLIR 11 1 A0A087WVD4;Q9HBK9-2;Q9HBK9 A0A087WVD4 AS3MT Arsenite methyltransferase 1 NS(1)RFAQDFLIR;NS(1)RFAQDFLIR 62.408 0.049155 1199880000.0 51876.0 104454.0 96523.0 136984.0 147695.0 66576.0 83948.0 66827.0 60878.0 97030.0 True False 51596.70537996545 107930.68824622357 110112.59940704406 154326.1603547141 166503.08279314972 61973.75782304669 79887.11452749753 71813.97008063018 45875.432623406305 90837.46232843766 0.5680113034576985 1.1881737499004823 1.2121936983324568 1.698926372433465 1.8329781405730015 0.6822488897694045 0.8794511920495163 0.7905765775465531 0.5050276774304439 1.0 16.47099978245338 2.700180883866489 24.994433381657824 0.7704182975384094 1.311119309319162 0.3791030000032217 0.3380903632499093 612.9981514445095 399208.64615774463 0.11516988985902384 0.10858506860367444 501.39602183511306 -2.700180883866489 0.5407010117807526 NS(ph)SEASSGDFLDLK ddPTM_BT-474_Trastuzumab_2h_R1 5 NSSEASSGDFLDLK 14 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 NS(0.79)S(0.21)EASSGDFLDLK;NS(0.995)S(0.005)EASSGDFLDLK;NS(0.794)S(0.206)EASSGDFLDLK;NS(0.719)S(0.281)EASSGDFLDLK;NS(0.774)S(0.226)EASSGDFLDLK 340.57 6.8281e-69 1208460000.0 2348800.0 1587610.0 1522730.0 1267660.0 1407040.0 2112210.0 1952380.0 1890230.0 2566280.0 1884100.0 True False 2336154.3217762113 1640452.639119487 1737117.1481935706 1428145.6260238923 1586218.2038205313 1966197.8943075195 1857935.9205841206 2031288.5609934554 1933854.68039021 1763855.1249408363 1.3244592986935768 0.9300381964048842 0.9848411718348112 0.8096728613535057 0.8992905264108562 1.1147162068503047 1.0533381649734073 1.151618708515865 1.096379545601896 1.0 20.750300638659088 2.7198216884380098 24.193265340054815 1.0948451149601948 0.9760810178934207 0.10575196535153819 0.1309547441640235 1027.4788771659692 1326544.8632834891 0.04256094159039619 0.04020141043560517 524.5920303197554 -2.7198216884380098 -0.11876409706677404 NS(ph)SEKLPTELSK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSSEKLPTELSK 12 1 P38432 P38432 COIL Coilin 1 NS(0.974)S(0.026)EKLPTELSK 94.384 0.0040211 268640000.0 256770.0 201770.0 160240.0 154090.0 176180.0 302920.0 278830.0 264430.0 414640.0 262610.0 True False 255387.57884982877 208485.79247745915 182800.39916895167 173597.77820079625 198615.47869932704 281979.8533969796 265341.9276659616 284163.109348333 312457.52789134334 245850.0049682675 1.0387942797999632 0.8480202898688937 0.7435444192589957 0.7061125673892217 0.8078725836306689 1.1469589086783851 1.0792838003001464 1.1558393475933046 1.2709274825179404 1.0 17.907418858750088 2.738492218551109 24.99980839396704 1.1370862700786708 0.818372751372589 0.6769120349917686 0.10405426480624988 3.594939231378344 1313726.1089050453 0.03363711149771257 0.033625525581836437 547.6362886291446 -2.738492218551109 -0.3187135187060818 NS(ph)SPQRPAVSAPVGASEIAEETRPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSSPQRPAVSAPVGASEIAEETRPGQR 27 2 P0CG23 P0CG23 ZNF853 Zinc finger protein 853 1 NS(0.5)S(0.5)PQRPAVSAPVGASEIAEETRPGQR 101.85 0.0013188 192320000.0 24180.0 30194.0 22814.0 25326.0 24724.0 27543.0 26711.0 20021.0 34461.0 26726.0 True False 24049.817566650545 31198.989037341544 26026.012897157165 28532.26900326673 27872.45484937089 25639.017239248005 25418.88688407093 21515.068684578022 25968.548303741987 25020.32379872022 0.9612112840794125 1.2469458544312428 1.0401948874254132 1.140363699239022 1.1139925715428414 1.0247276352418522 1.0159295734362597 0.8599036870049823 1.037898170809055 1.0 14.610812839708064 2.3878741767485043 2.0510166605211224 0.9520620814697209 1.1070263796696798 0.3205260482619565 0.08212643654730117 0.30096588658442835 2.5900287016864976 0.03323326866363348 0.02521261240320501 244.27227476021883 -2.3878741767485043 0.15496429819995883 NS(ph)TGSGHSAQELPTIR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSTGSGHSAQELPTIR 16 0 O94763-3;O94763;O94763-2;O94763-4;I3L280 O94763-3 URI1 Unconventional prefoldin RPB5 interactor 1 1 NS(0.728)T(0.045)GS(0.22)GHS(0.008)AQELPTIR 98.002 0.0018562 279200000.0 899750.0 708530.0 712760.0 751410.0 641010.0 918160.0 976990.0 788320.0 1235800.0 1235500.0 True False 894905.8459716236 732112.9927345697 813110.4125790187 846538.4289561961 722638.8239360643 854689.7603161572 929729.2612357636 847148.4414078487 931253.6488716038 1156649.3322352332 0.7737054101282466 0.6329602000631912 0.7029878372969594 0.7318885727623725 0.6247691532744497 0.7389359389197616 0.8038125604058881 0.7324159689529481 0.8051304945397317 1.0 20.141520110237394 0.31245263899855924 0.45107408497173906 1.027312203468501 0.6896332999549362 0.7617529054366278 0.04908574992620804 1.2273877072838713 0.40622756089171713 0.11303100481626159 0.028194534448774972 2.0533010961450864 -0.31245263899855924 -0.3376789035135648 NS(ph)WDSPAFSNDVIR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSWDSPAFSNDVIR 14 0 A0A0C4DGT3;A0A3B3IU98;Q6DN90-2;A0A3B3IRZ4;Q6DN90-3;A0A2R8Y7T6;Q6DN90;A0A2R8Y695 A0A0C4DGT3;A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 NS(1)WDSPAFSNDVIR;NS(1)WDSPAFSNDVIR;NS(0.999)WDS(0.001)PAFSNDVIR;NS(1)WDSPAFSNDVIR 273.55 5.4322999999999994e-33 991870000.0 817650.0 749460.0 741880.0 736380.0 754280.0 904820.0 898170.0 818230.0 1080570.0 858110.0 True False 813247.8632494545 774405.3230418623 846330.2554634413 829605.6324972576 850333.0870321741 842271.9231171752 854722.0857574036 879290.4774877524 814278.002396172 803344.6851350666 1.0123274334138688 0.963976406854128 1.0535082525891704 1.0326895140381438 1.0584909600655505 1.0484564579842384 1.0639543667531688 1.0945369948391668 1.0136097461816993 1.0 19.615659601455377 4.225560816089583 24.996646217559526 1.0522550046321373 0.9881519244811436 0.3892318794604379 0.027848323611522903 166.57169393784125 320293.87457635213 0.006834694306207136 0.014907081292266817 16809.73303015408 -4.225560816089583 -0.06410308015099364 NSATCHS(ph)EDS(ph)DLEID ddPTM_BT-474_Trastuzumab_2h_R1 2 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 2 NSATCHS(1)EDS(1)DLEID;NSATCHS(1)EDS(1)DLEID 209.42 3.4985e-09 1236500000.0 1015610.0 1012380.0 805970.0 912140.0 951400.0 1186790.0 1063150.0 915960.0 1278540.0 1084280.0 True False 1010142.0686048798 1046076.4563033662 919443.5703831752 1027616.8304761786 1072555.1506103976 1104750.0007031602 1011721.3728726006 984313.5863506354 963460.9485582619 1015080.3221011895 0.9951351106027869 1.0305356468126734 0.9057840550784703 1.0123502624393692 1.0566209661026988 1.088337520341599 0.9966909522769233 0.9696903436302776 0.9491474985584619 1.0 19.95316245999788 1.8671592456571726 4.555102690625807 0.9705677904818997 1.0143554942863557 0.13900932789650067 0.04593644527887034 0.4726707122740421 14.52927377011736 0.02337017398579774 0.01337314994678731 73.64770969645647 -1.8671592456571726 0.04378770380445607 NSATCHSEDS(ph)DLEID ddPTM_BT-474_Trastuzumab_2h_R1 2 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 1 NSATCHS(0.002)EDS(0.998)DLEID;NSATCHS(0.068)EDS(0.932)DLEID 231.51 1.9359e-13 1968280000.0 1136160.0 1149960.0 1027730.0 1130030.0 1159260.0 1445490.0 1304870.0 1119870.0 1463070.0 1193600.0 True False 1130043.0407992434 1188235.7234345016 1172425.4508107028 1273091.682135415 1306884.8895276536 1345566.678617455 1241748.4530125267 1203440.3859846368 1102516.0026335786 1117423.4261076292 1.011293493940406 1.063371051360124 1.049222186879207 1.1393099986904982 1.1695520775682893 1.2041690259748066 1.1112604443402125 1.076977945752072 0.9866591095857206 1.0 20.091744540276487 1.36432594127312 3.1044753535261718 0.9917310923384706 1.109744395483101 0.40502326833747915 0.053985766609002506 0.2735746826035062 4.355485233709537 0.04955858008955998 0.015712693098160917 23.13800663491173 -1.36432594127312 0.11801330314463043 NSATFKS(ph)FEDR ddPTM_BT-474_Trastuzumab_2h_R1 7 NSATFKSFEDR 11 1 O43399;O43399-7;O43399-2;O43399-3;O43399-5;O43399-4;O43399-6 O43399 TPD52L2 Tumor protein D54 1 NSAT(0.015)FKS(0.984)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR 186.77 2.3504e-06 6974990000.0 5761430.0 5766480.0 4902790.0 7909610.0 5669280.0 6788860.0 8424330.0 6316550.0 13000900.0 8599830.0 True False 5730411.101035045 5958413.800889223 5593060.216185382 8910965.81500942 6391229.203544787 6319562.087457473 8016812.973834207 6787923.035790985 9797002.398134686 8050981.486715117 0.7117655295184528 0.740085393404664 0.6947053878355653 1.1068173277647402 0.7938447273901849 0.7849430653747435 0.9957559816853025 0.8431174567960071 1.2168705659428816 1.0 22.940733240713218 6.436683839512069 0.2008839009335851 1.058531159066102 3.528983923939988e-11 0.3862496148143234 0.13386815189615717 30.860511847156904 0.6410036598444696 0.2520114152535075 9.094032799550275 2733278.212422575 -6.436683839512069 -1.0585311590308122 NSDDTVTWDEYNIQMYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSDDTVTWDEYNIQMYDR 18 0 Q14257;Q14257-2;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 ; 224.59 1.0515e-18 168102000.0 25979.7 30774.0 26966.9 25613.1 27782.0 28318.0 32783.0 25750.6 26965.0 30219.0 False True 25839.828181816018 31798.29398672414 30763.605119503274 28855.71583382969 31319.873023184868 26360.443313401767 31197.161046778398 27672.240530897307 20319.8370624881 28290.39754821247 0.913378051255017 1.1239960107500617 1.0874221568316942 1.0199826914646146 1.107084938266052 0.9317805898089033 1.102747354243157 0.9781495818055684 0.7182591558799784 1.0 14.78802482976558 1.4466577571981707 6.800748889043579 0.8538461360838104 1.042409712344433 0.37597803161635146 0.0926043730004007 0.14932429795905128 16.134537928485578 0.051620317028655015 0.02115633351480305 27.967764703844797 -1.4466577571981707 0.18856357626062248 NSDLLT(ph)SPDVGLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSDLLTSPDVGLLK 14 0 P05412 P05412 JUN Transcription factor AP-1 1 NSDLLT(0.5)S(0.5)PDVGLLK 263.04 1.5163e-23 74069000.0 276880.0 260910.0 224650.0 236130.0 230670.0 298590.0 306480.0 259640.0 411730.0 319710.0 True False 275389.3088442602 269594.23162657436 256278.76730719538 266024.03378904564 260044.45721179392 277949.1761052557 291654.3915327043 279015.65522520576 310264.65839934075 299305.8340824984 0.9200933543057966 0.9007316294151 0.8562438085872949 0.8888033693179559 0.8688252202264699 0.9286460351075012 0.9744360394001371 0.9322092102899003 1.0366141353389782 1.0 18.191260874622166 1.9514344848754455 0.9304567449061247 1.0070195030701967 0.8855145374723827 0.7318384558185969 0.028400173668892595 0.3001396647926919 0.4786175377096415 0.023940721277072113 0.011189226273279293 89.41996280333372 -1.9514344848754455 -0.12150496559781399 NSDLLTS(ph)PDVGLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSDLLTSPDVGLLK 14 0 P05412 P05412 JUN Transcription factor AP-1 1 NSDLLTS(1)PDVGLLK 269.91 7.7664e-26 83852000.0 261030.0 218290.0 199450.0 204620.0 216650.0 287880.0 234720.0 229560.0 338320.0 264340.0 True False 259624.6434831597 225555.6506909087 227530.82634952225 230524.8710198385 244239.09331484404 267979.53319662786 223365.69688252528 246690.93288206027 254945.56925573823 247469.5948871402 1.0491173414720418 0.9114479328006923 0.9194294210296374 0.9315280575174116 0.9869458647080687 1.0828786191646749 0.9025985474473839 0.9968535043449073 1.0302096682705908 1.0 17.91689175518395 3.1295755216283574 6.215674708867587 0.9973927559075071 0.947782665275712 0.14868839523028332 0.05482767526880591 0.4052343001778661 20.783893053955943 0.01584560986804486 0.01905602851854387 1347.6450536733541 -3.1295755216283574 -0.04961009063179511 NSDMHLLDLESMGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSDMHLLDLESMGK 14 0 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 0 160.48 4.7477e-06 267280000.0 191700.0 174180.0 180800.0 156530.0 175070.0 207130.0 226140.0 222600.0 300490.0 216800.0 False True 190667.9084998722 179977.47600596634 206255.06845822802 176346.68195061755 197364.12677881285 192811.59063157372 215200.74426130828 239211.54233989655 226438.26585970918 202963.63838818172 0.9394190506932424 0.8867473870454924 1.0162168460133298 0.8688584977637352 0.9724112572387995 0.9499809530552881 1.0602921093172477 1.1785930930267827 1.1156592760060333 1.0 17.63086176137512 2.153474816452963 3.295505446932354 1.1184794156670272 0.9369993395379907 0.6202755389255097 0.057183575109733036 0.1326106652457953 2.8698431422400756 0.022385242406066673 0.01564468366228634 142.38846770813007 -2.153474816452963 -0.1814800761290365 NSEGWEQNGLYEFFR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSEGWEQNGLYEFFR 15 0 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ;;; 286.53 7.0453e-34 360303000.0 160097.0 156171.0 163020.0 171430.0 151698.0 195757.0 162544.0 157773.0 221556.0 182623.0 False True 159235.05554044884 161369.05732763713 185971.79900475845 193133.02042288607 171015.84111551003 182224.77935241174 154681.12574162037 169546.82241506086 166956.49249829844 170967.84378858365 0.9313742982999575 0.943856188109758 1.0877589310579858 1.1296452955311969 1.0002807389147736 1.0658424140726035 0.9047381210053559 0.9916883705027011 0.9765373932232216 1.0 17.38336547809058 2.25457002121631 24.983005799061683 0.9678915229649583 1.028991573324701 0.17485066421915973 0.06180986982533404 437.00217108277053 681949.6742690227 0.0229403446676544 0.019136746223139073 179.7090801423448 -2.25457002121631 0.06110005035974275 NSGEPLPPKPGPGS(ph)PSHPGALDLDGVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSGEPLPPKPGPGSPSHPGALDLDGVSR 28 1 A1X283;G3V144;A0A1B0GUF2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 NSGEPLPPKPGPGS(0.956)PS(0.044)HPGALDLDGVSR 77.044 0.004700800000000001 186570000.0 62353.0 54556.0 51427.0 47311.0 54912.0 69676.0 62466.0 54887.0 81853.0 62035.0 True False 62017.298376069535 56371.863480201544 58667.474588502766 53300.56774909391 61904.71771107647 64859.46211966177 59444.28093670681 58982.94665053865 61681.42492400671 58075.87318916446 1.0678668261098216 0.9706589050600648 1.0101866983112135 0.9177747112898942 1.0659283160399624 1.1168056295667195 1.0235624136564454 1.0156187657897056 1.0620834700685131 1.0 15.825651320123901 NSGTQS(ph)DGEEKQPGLVMER ddPTM_BT-474_Trastuzumab_2h_R1 2 NSGTQSDGEEKQPGLVMER 19 1 J3QRV5;Q6P1M3;Q6P1M3-2 J3QRV5 LLGL2 Lethal(2) giant larvae protein homolog 2 1 NSGT(0.001)QS(0.999)DGEEKQPGLVMER;NS(0.001)GT(0.011)QS(0.988)DGEEKQPGLVMER 295.99 6.5232e-50 861290000.0 763350.0 551330.0 579400.0 506030.0 491650.0 812310.0 718690.0 698540.0 1042940.0 749750.0 True False 759240.208416158 569680.6857639778 660974.4837649189 570093.3461155748 554258.7132621428 756156.9216720599 683924.2190375851 750668.6019142471 785921.4116800051 701900.3131067317 1.081692363201307 0.8116262026475995 0.9416928179435223 0.8122141213931697 0.7896544607722118 1.077299593050727 0.97438939157958 1.0694803633747627 1.1197051732337624 1.0 19.420906621777352 2.724547585870349 24.696425663379685 1.0476615951294657 0.8820096116729733 0.45913809309594744 0.08716375256144478 588.003139450966 1036289.1831459706 0.02734526668399756 0.025901592154886383 530.3316981634908 -2.724547585870349 -0.16565198345649235 NSHLINVLMWELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSHLINVLMWELEK 14 0 A0A087WZK9;B3KS98;O15372;E5RJT0 A0A087WZK9 EIF3H Eukaryotic translation initiation factor 3 subunit H 0 ; 148.33 7.7883e-06 357630000.0 547340.0 437180.0 410620.0 406340.0 410910.0 563400.0 506700.0 303110.0 793740.0 471830.0 False True 544393.1822551903 451731.2720191091 468431.72682697844 457782.602337021 463236.95284561603 524453.4841009442 482188.9852180281 325729.6073613925 598133.4125710847 441717.4054460137 1.2324467533841057 1.022670301078546 1.0604783081934264 1.036369852518684 1.0487179068207046 1.1873054528412565 1.091623239820376 0.7374162832286284 1.3541087699886618 1.0 18.752764155933985 4.7423656145844015 23.324037305013352 1.04205639050672 1.2324469500995545 0.09972030482927141 0.14707042189969716 317.1860199445404 1944080.4840280293 0.03503386060942504 0.2591960073531628 55254.240616232004 -4.7423656145844015 0.19039055959283457 NSKYEYDPDIS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSKYEYDPDISPPR 14 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 NSKYEYDPDIS(1)PPR;NSKYEYDPDIS(1)PPR 82.586 0.0062381 435770000.0 555730.0 597490.0 550620.0 652140.0 635460.0 694640.0 776230.0 699260.0 1153980.0 781250.0 True False 552738.0114274074 617377.0934596683 628142.5099251636 734700.8571345792 716382.0643334917 646621.1718066742 738680.7894134396 751442.331970333 869597.0915397741 731389.9561382234 0.7557363986045044 0.8441148094505578 0.8588339293607317 1.004526861448628 0.979480314599924 0.8840990587577484 1.0099684623968752 1.0274168050351513 1.1889650442170296 1.0 19.48028128934542 5.907821573909503 0.30705268066020763 1.0703080806691694 0.17895185112685452 0.667745818268106 0.06681391152259705 9.311506987475907 0.4078616825461588 0.07006501379558847 3.55297594823125 808763.5574773102 -5.907821573909503 -0.8913562295423149 NSLDASRPAGLS(ph)PTLTPGER ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLDASRPAGLSPTLTPGER 20 1 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 NSLDASRPAGLS(0.942)PT(0.058)LTPGER 178.95 3.6353e-17 784760000.0 401800.0 409540.0 372900.0 371650.0 380380.0 429720.0 442190.0 378020.0 521110.0 415330.0 True False 399636.75344417663 423171.2913278421 425401.07869509555 418700.8518938668 428819.1383111023 400014.4678520731 420799.58037015976 406229.7719466654 392689.42301625013 388823.28381809755 1.027810756392711 1.0883383504518045 1.0940730568339887 1.076840995174936 1.102863835982919 1.028782185891962 1.0822386361178453 1.0447670930548263 1.0099431781970167 1.0 18.568755088553107 1.3569462234199026 1.8220082940402824 0.9986113414493534 1.0735268374661042 0.5492836343647887 0.023954575115654908 0.23725712655448528 1.4005191957027672 0.020943691546123543 0.006397101608872789 22.748157339285452 -1.3569462234199026 0.07491549601675085 NSLDASRPAGLSPT(ph)LTPGER ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLDASRPAGLSPTLTPGER 20 1 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 NSLDASRPAGLS(0.063)PT(0.937)LTPGER 233.54 2.7651e-29 765560000.0 531080.0 533450.0 553310.0 537980.0 551290.0 611380.0 646280.0 503730.0 650750.0 629220.0 True False 528220.7242885354 551205.5607726653 631211.2385432645 606088.212839668 621493.5137481665 569116.739633716 615016.9673706477 541320.8904891107 490381.38210325 589062.6408976559 0.8967140124242047 0.9357333541517737 1.071551978888662 1.028902820786712 1.0550550494953985 0.9661395921602753 1.0440603845347258 0.9189530160395287 0.8324774787210605 1.0 19.168061532783163 -0.5435185749603473 5.269584139959375 0.9999999982161768 0.9769338605033168 0.00892633968049572 0.07398709221730143 9835253.380626626 1866419.226927368 0.10214289149762817 0.017893867026669494 0.28607600020843044 0.5435185749603473 -0.023066137712860035 NSLESYAFNMK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSLESYAFNMK 11 0 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 209.85 3.4335e-08 961730000.0 643700.0 696300.0 602510.0 548400.0 603500.0 672080.0 627440.0 652060.0 756540.0 661080.0 False True 640234.390721794 719475.9245777616 687338.1708891981 617827.3837712817 680352.1477752528 625620.6915061459 597088.3301464363 700720.0282935901 570100.8541166228 618889.3084209369 1.034489337609205 1.1625276358602252 1.110599523270009 0.9982841444581347 1.099311522299739 1.0108765541650473 0.9647740266670228 1.1322218993917343 0.9211677215287574 1.0 19.23932187342013 3.752868521969411 23.536511902086836 1.0295312115333912 1.108537735865816 0.24958053300273653 0.06476851368183416 523.3156857630943 860848.8256231967 0.015990331818557166 0.028637568236594173 5660.6789206769545 -3.752868521969411 0.07900652433242472 NSLFTGDTLGAGQFSFQRPLLVLVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSLFTGDTLGAGQFSFQRPLLVLVDR 26 1 Q8WVM8;Q8WVM8-2;Q8WVM8-3;H0YJY1 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 0 ; 125.54 0.00010101 351070000.0 86705.0 82954.0 84369.0 91756.0 105283.0 105602.0 83651.0 86516.0 152253.0 101896.0 False True 86238.18991383101 85715.07374324808 96247.42185150595 103372.30019204527 118690.16598876865 98301.98230036919 79604.48155214773 92972.26323934642 114732.28823567607 95392.91004244538 0.9040314408634672 0.8985476353023394 1.0089578125741248 1.083647622722165 1.2442241874784727 1.030495686279299 0.8344905456467097 0.9746244579180792 1.2027339158080572 1.0 16.54159442327803 4.167329530174545 3.9943449576377605 1.041515147354929 0.8994832333903603 0.22733614353999854 0.10872437382177828 0.35862410135439177 11.055425962230899 0.030238364458058394 0.07466382875553713 14700.412796598146 -4.167329530174545 -0.1420319139645686 NSLLAGGDDDTMSVIS(ph)GISSR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 NSLLAGGDDDTMS(0.001)VIS(0.99)GIS(0.004)S(0.004)R 171.58 1.2107999999999999e-17 0.0 62655.0 30538.0 22897.0 37896.0 32995.0 35013.0 33233.0 35819.0 58090.0 38074.0 True False 62317.672441624905 31554.438869389178 26120.69857570824 42693.62971443559 37196.71767331311 32592.633721736565 31625.392827611464 38491.995665196584 43774.4978661203 35644.084723208616 1.7483313970760639 0.8852643885913394 0.7328200114702483 1.197776013775348 1.0435593440583857 0.9143910967228404 0.8872550122466605 1.0798985571968869 1.2280999275489264 1.0 15.121375055136598 4.7436848294144065 24.84022837743234 0.9948931840390107 1.7483317409794634 0.7137960556342239 0.14280568550949205 273.63159808151596 1326415.1572414886 0.034825350608100235 0.2939885795768917 55422.33631562457 -4.7436848294144065 0.7534385569404527 NSLLAGGDDDTMSVISGIS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 NSLLAGGDDDTMSVIS(0.003)GIS(0.498)S(0.498)R;NSLLAGGDDDTMSVIS(0.102)GIS(0.449)S(0.449)R;NSLLAGGDDDT(0.046)MS(0.028)VIS(0.094)GIS(0.416)S(0.416)R;NSLLAGGDDDTMSVIS(0.004)GIS(0.498)S(0.498)R 214.49 3.8300999999999994e-32 143950000.0 217459.0 191120.0 187307.0 201620.0 188266.0 219515.0 205136.0 194342.0 261072.0 217794.0 True False 216288.22490596617 197481.31366552008 213678.19749837022 227145.07132743552 212240.5591599927 204340.44473272786 195212.78798437992 208844.7868886799 196734.3037855698 203894.20045717544 1.0607865472436224 0.9685479686166832 1.0479856563808922 1.1140339981133673 1.0409347528478148 1.0021886070057502 0.9574219744684749 1.024280172856335 0.9648842553856285 1.0 17.637461214525672 2.700875878564358 4.319722290197678 0.9904804735741778 1.0462191075012102 0.36985786175669044 0.037257050764744996 0.26535278099202175 11.4281335348938 0.01279885218538609 0.012376759536325662 502.19904044034723 -2.700875878564358 0.05573863392703238 NSLS(ph)PVQATQKPLVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSLSPVQATQKPLVSK 16 1 O00515;E9PDI4;A0A0J9YYF6;A0A0J9YW63;A0A0J9YVY2 O00515 LAD1 Ladinin-1 1 NSLS(1)PVQATQKPLVSK;NSLS(1)PVQATQKPLVSK 169.84 3.3185e-12 604060000.0 274630.0 228320.0 206668.0 207500.0 223222.0 307540.0 300850.0 297280.0 400140.0 315730.0 True False 273151.42259426176 235919.49317764523 235765.05800954124 233769.47872454568 251647.9985595483 286280.48367128964 286296.7361413925 319464.54315725266 301530.85860129783 295579.8410899473 0.924120608452251 0.7981582651499329 0.7976357830769523 0.7908843778470256 0.8513706402696447 0.9685385938893315 0.9685935789317583 1.0808062619535581 1.0201333673142465 1.0 18.173188353693224 2.569901186920801 1.7080453162231053 1.0339168522880704 0.8216838057360639 0.8034604562892962 0.04393619948002885 0.14390058917427817 0.8446571921409883 0.018702119513393203 0.015914374542841867 371.45070496586425 -2.569901186920801 -0.21223304655200648 NSLSSLPTYSTGGAEPT(ph)TSSPGGHLPSHGSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLSSLPTYSTGGAEPTTSSPGGHLPSHGSGR 32 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 NSLSSLPTYSTGGAEPT(0.207)T(0.207)S(0.207)S(0.207)PGGHLPS(0.072)HGS(0.1)GR 117.21 2.569e-06 367830000.0 22537.0 26926.0 29245.0 24982.0 30272.0 33985.0 37387.0 29883.0 40914.0 32583.0 True False 22415.663296096085 27822.21563288929 33362.44179790312 28144.718638537826 34126.95976379856 31635.69694208486 35578.44797779041 32113.021202799315 30831.29291951191 30503.525044290265 0.7348548491870749 0.912098375269488 1.093724143339558 0.9226710223711024 1.1187874094632395 1.0371161003900604 1.1663716874076522 1.0527642676107796 1.0107452458280062 1.0 14.896688352390761 4.614975691537197 1.9828028473422226 1.0571992725230699 0.6809011911331605 0.6919600375686004 0.06534522948809618 0.2944025121950865 1.5195796136526576 0.01623486674110743 0.18365062762828377 41207.445369519664 -4.614975691537197 -0.3762980813899094 NSLSSLPTYSTGGAEPTTSSPGGHLPSHGS(ph)GR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSLSSLPTYSTGGAEPTTSSPGGHLPSHGSGR 32 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 NSLSSLPTYSTGGAEPT(0.084)T(0.056)S(0.056)S(0.056)PGGHLPS(0.295)HGS(0.455)GR 172.0 3.6807e-14 1087700000.0 20391.0 38093.0 42471.0 35398.0 48515.0 48309.0 45148.0 31024.0 29627.0 28675.0 True False 20281.217121653084 39360.90247729525 48450.54763545028 39879.38317056131 54693.09767906609 44969.51253715396 42964.01875789129 33339.16841667993 22325.822831460602 26844.936950097373 0.7554950551515272 1.4662318838917026 1.8048300029728526 1.4855457937820435 2.0373710610956643 1.6751580613040273 1.6004514682883413 1.2419164358126384 0.8316586056045708 1.0 14.712362396037072 1.5124579717132252 2.991226654154127 0.9234259752393854 1.5742728920705085 0.3893386505849007 0.3145354555395406 0.23465655906184674 4.4024993880217265 0.2336125989299301 0.08508339017240585 32.54302888788464 -1.5124579717132252 0.6508469168311231 NSLTSKDPDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSLTSKDPDIK 11 1 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 ; 88.552 0.011759 721490000.0 1033480.0 789310.0 679240.0 691330.0 706690.0 1047860.0 1055100.0 932880.0 1629460.0 911860.0 False True 1027915.8585104235 815581.7062020294 774871.087940083 778852.3071163378 796682.7826202043 975423.904597117 1004060.7821265862 1002496.2426686565 1227901.4166453497 853664.3141173777 1.2041218562277705 0.9553892469375121 0.9076999883042308 0.9123636706327712 0.9332506577177377 1.1426316978069173 1.1761775273044026 1.1743447934861366 1.438389067387576 1.0 19.703309345729103 2.5821686987182115 3.422410110519959 1.203882794546188 0.9732807207548138 0.3927172652263268 0.1273308018174084 0.24274606366067555 5.308836287152285 0.04312720907541364 0.039665189224063854 382.0926632963236 -2.5821686987182115 -0.23060207379137432 NSMDRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSMDRPK 7 1 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 0 ; 76.899 0.036032 111557000.0 218182.0 194328.0 175699.0 175369.0 169683.0 200664.0 215270.0 191309.0 298350.0 196602.0 False True 217007.33235429923 200796.09000624352 200435.89199691507 197570.69741901118 191291.12426006337 186792.5699922473 204856.56768874064 205585.44902741793 224825.64018517785 184054.6920405594 1.1790372195807874 1.0909588219679556 1.089001805793388 1.0734347232803678 1.0393167494904683 1.0148753499372054 1.1130200779863695 1.116980212501803 1.2215153968236458 1.0 17.489775002737236 -0.3995278532043818 6.656273544399778 0.999999999973922 1.0995552547468976 0.22321726251038487 0.057743839081019335 0.0 0.0 0.05702398964911589 0.013440683257067118 0.39854021136709056 0.3995278532043818 0.09955525477297567 NSMPTVSFLDQDQS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 3 NSMPTVSFLDQDQSPPR 17 0 A7KAX9;A7KAX9-2 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 NSMPTVSFLDQDQS(1)PPR;NSMPTVSFLDQDQS(1)PPR;NSMPTVSFLDQDQS(1)PPR 331.07 1.3303e-51 133060000.0 236561.0 213302.0 205591.0 217934.0 211651.0 243859.0 235067.0 230293.0 282775.0 230302.0 True False 235287.38186039764 220401.6281262182 234536.42577099323 245524.42205472357 238603.50029623843 227001.60131233974 223695.91116685653 247478.63306415913 213088.89024087068 215603.92918853805 1.0912944988801532 1.0222523724671304 1.08781146361159 1.1387752671242883 1.1066751018604493 1.0528639351179674 1.0375316999498758 1.1478391604252618 0.9883349113481691 1.0 17.718023944592005 1.2135928305991064 24.974960572678363 0.9941672724973963 1.0856739063316738 0.47750243951915006 0.03827007451479299 229.0423982566614 229102.1787782953 0.037782394930054995 0.009461045722719434 16.35282656021186 -1.2135928305991064 0.09150663383427748 NSNILEDLETLR ddPTM_BT-474_Trastuzumab_2h_R1 5 NSNILEDLETLR 12 0 B0YIW6;P48444;Q6P1Q5 B0YIW6 ARCN1 Coatomer subunit delta 0 ;;;; 174.42 7.0774e-05 249997000.0 351463.0 352834.0 304939.0 339666.0 334655.0 378403.0 379567.0 357189.0 453131.0 364285.0 False True 349570.7622592106 364577.8663973428 347871.7606226972 382667.6807732605 377271.330594411 352244.89127484895 361205.8941232507 383844.256948991 341462.93669431837 341036.01941992046 1.025025927917547 1.0690303828242702 1.0200440446566432 1.122074088901673 1.1062506864703745 1.0328671202355517 1.0591429454801808 1.1255240944985356 1.0012518245876905 1.0 18.379564595780646 3.7921766887998185 24.999948150330436 1.0724223312868602 1.041133160192549 0.04137644828861853 0.04468008618626959 803.7694478026413 374776.1606429831 0.011155910154443114 0.02011153362276889 6196.9314037284785 -3.7921766887998185 -0.031289171094311063 NSNLVGAAHEELQQSR ddPTM_BT-474_Trastuzumab_2h_R1 8 NSNLVGAAHEELQQSR 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;; 278.24 2.3061999999999993e-35 30773535700.0 6555451.0 6492996.8 6705070.0 6858028.3 6683297.0 8429980.0 8092944.0 6971509.0 8971125.0 7373717.0 False True 6520157.180195073 6709112.2733885525 7649085.574486801 7726253.979610518 7534375.257945151 7847235.324638423 7701457.380671661 7491758.402185404 6760311.450666175 6903120.068103259 0.9445232178884276 0.9718956366395618 1.108062079034431 1.1192408510045555 1.0914449094922578 1.136766454475791 1.1156487652963216 1.085271345170718 0.9793124534952029 1.0 22.718817147066797 4.2971103367883465 5.544585316981785 1.088036403942157 0.9534176852061863 0.4865007048964405 0.04934360608669943 0.14296933774026202 8.759773751954247 0.011840134304965983 0.033092095396572124 19820.305162079047 -4.2971103367883465 -0.13461871873597075 NSNPDEIEIDFETLKPSTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSNPDEIEIDFETLKPSTLR 20 1 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 0 ; 198.95 1.3728e-21 168877000.0 242690.0 217800.0 184568.0 173249.0 183837.0 251760.0 237940.0 229930.0 318840.0 240660.0 False True 241383.38400539395 225049.34133711978 210553.5701061852 195182.30563637993 207247.55226273267 234356.4237792933 226429.9331809309 247088.54416088236 240266.1542371115 225300.87276060824 1.0713823743677817 0.9988835754588677 0.9345439612651093 0.8663184622625472 0.9198701706004575 1.0401931466475365 1.0050113450804177 1.096704780293614 1.0664235397454698 1.0 17.78149337666955 2.6576368718492662 6.149097794425461 1.0494336642831037 0.9542014716940178 0.3476988547762693 0.056580123638166585 0.2654805125989112 16.282409215483632 0.020108748666686837 0.01895428793179967 454.6077884071163 -2.6576368718492662 -0.09523219258908588 NSNPVIAELSQAINSGTLLSKPS(ph)PPLPPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSNPVIAELSQAINSGTLLSKPSPPLPPKR 30 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 NSNPVIAELSQAINSGTLLS(0.001)KPS(0.999)PPLPPKR;NSNPVIAELSQAINSGTLLS(0.001)KPS(0.999)PPLPPKR 244.03 4.8772e-46 1457360000.0 543390.0 397490.0 402300.0 335940.0 421520.0 632430.0 581150.0 488970.0 790060.0 536250.0 True False 540464.4486163051 410720.2143622212 458940.34314571484 378469.9695552959 475198.073455218 588711.6026800857 553037.5542914094 525459.4243393494 595360.2992616113 502026.06589327723 1.0765665078657476 0.8181252772829803 0.9141763233530553 0.7538850973442335 0.9465605587822955 1.1726713863603178 1.101611234682337 1.0466775732140046 1.1859151141928463 1.0 18.93740274729552 2.911064545925645 5.379824654458377 1.0981300441809914 0.8829416651505043 0.5435375483761643 0.09228884190931423 0.16176621111007447 7.511351931503617 0.027122346655627794 0.029061304791434834 814.8253763953531 -2.911064545925645 -0.21518837903048704 NSNS(ph)DGGEGGEGTKK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSNSDGGEGGEGTKK 15 1 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 NS(0.429)NS(0.571)DGGEGGEGTKK 52.81399999999999 0.098028 454790000.0 120150.0 94641.0 74214.0 62193.0 74842.0 94913.0 92190.0 86183.0 145780.0 88021.0 True False 119503.12574991987 97791.06847330743 84662.6861203481 70066.62742320794 84372.68507671152 88351.88771116955 87730.41749999992 92614.41308840657 109854.47235191974 82403.42442143057 1.4502203833029155 1.1867354926074531 1.0274170850881528 0.8502878116432476 1.0238978012031357 1.0721870884796867 1.0646452876924855 1.1239146156688173 1.3331299411793622 1.0 16.33041667197203 4.649118781914229 2.7103599008089523 1.0621961274301717 1.4873317454517994 0.51728721499578 0.11390596353600152 0.30525757369725004 3.3612550558742122 0.02980705449991225 0.26250452409659175 44577.81544871917 -4.649118781914229 0.4251356180216277 NSNS(ph)PPS(ph)PSSMNQR ddPTM_BT-474_Trastuzumab_2h_R1 6 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 NSNS(1)PPS(0.992)PS(0.008)S(0.001)MNQR;NSNS(1)PPS(0.999)PS(0.001)SMNQR;NSNS(1)PPS(1)PSSMNQR;NSNS(1)PPS(1)PSSMNQR;NSNS(1)PPS(0.979)PS(0.02)SMNQR;NSNS(1)PPS(0.998)PS(0.002)SMNQR 355.72 5.983099999999995e-82 1847003000.0 1961451.0 1767058.0 1450007.0 1607632.0 1707815.0 1985860.0 1962926.0 1770410.0 2165350.0 1950771.0 True False 1950890.765753692 1825873.4573208813 1654155.3819132212 1811158.0463657773 1925295.1172374382 1848582.1724116132 1867971.7702744892 1902526.9841598205 1631728.5067034543 1826271.1246409188 1.0682372071875559 0.9997822517617061 0.9057556458044864 0.9917246250727897 1.0542219560176145 1.012216722626593 1.0228337649711072 1.0417549500126357 0.8934755002624731 1.0 20.800469530231624 4.733666796885614 6.691881002631712 0.9960260677094354 1.0694051797541746 0.1694575250329834 0.05016387591249508 0.20890874672564577 62.770952020850125 0.012226925967399332 0.07019124035426527 54158.52113392139 -4.733666796885614 0.07337911204473924 NSNS(ph)PPSPSSMNQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 NS(0.015)NS(0.985)PPSPSSMNQR 78.505 0.08479199999999999 54757000.0 78246.0 75438.0 69898.0 69617.0 70928.0 81115.0 75400.0 82103.0 97286.0 79440.0 True False 77824.73222994777 77948.90822676593 79739.03083569268 78430.50506200813 79960.2603768071 75507.71097417132 71752.61394402871 88229.94277058647 73311.16886561159 74370.07118799431 1.0464523024755574 1.0481220063609318 1.0721924769189288 1.0545976870688984 1.0751671888908347 1.0152970108540202 0.9648049651942764 1.1863635648210806 0.9857617142828059 1.0 16.18243453266226 NSNSPPS(ph)PSSMNQR ddPTM_BT-474_Trastuzumab_2h_R1 7 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 NSNSPPS(0.999)PS(0.001)SMNQR;NSNSPPS(1)PSSMNQR;NSNSPPS(0.999)PS(0.001)SMNQR;NSNSPPS(0.985)PS(0.015)SMNQR;NSNSPPS(0.939)PS(0.046)S(0.014)MNQR;NSNS(0.003)PPS(0.964)PS(0.032)S(0.001)MNQR;NSNS(0.014)PPS(0.924)PS(0.04)S(0.022)MNQR 375.49 2.513299999999999e-97 3849476000.0 2001522.0 1798661.0 1634844.0 1698170.0 1677769.0 1986134.0 1789383.0 1689389.0 2313448.0 1914984.0 True False 1990746.0279419974 1858528.3440714662 1865015.8248812123 1913158.147882709 1891422.9372340327 1848837.231436541 1702823.7081831275 1815459.7857235204 1743329.7390149804 1792768.081619714 1.1104314319024557 1.036680852992619 1.040299547946115 1.0671531736298128 1.0550293463085236 1.0312751829930897 0.9498293313235896 1.0126573561502195 0.9724234589450815 1.0 20.77375743782167 2.4476573351604674 5.2477908624012475 0.9864325511519345 1.0583414750937923 0.6907682534736369 0.024564206338138446 0.10696900297375235 7.8773295836385655 0.008266249579121534 0.0070174594265969194 280.32209818903533 -2.4476573351604674 0.07190892394185777 NSPEDKR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSPEDKR 7 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 0 ;;; 100.19 0.015998 1267870000.0 2017250.0 1720650.0 1643830.0 1536980.0 1552520.0 1417540.0 1935320.0 2067170.0 3048470.0 2143620.0 False True 2006389.350137543 1777920.7950951103 1875266.9755735013 1731561.5104098923 1750224.2194930168 1319548.7963302329 1841701.1779596487 2221432.7222765703 2297215.4159051795 2006812.336354586 0.9997892248271647 0.8859427276218255 0.9344505919173093 0.8628417710224503 0.8721414492958188 0.6575347243117008 0.917724664432318 1.1069459171811982 1.144708637818181 1.0 20.93647428115716 1.8052011457283172 4.559820007552721 1.0936287621613479 0.8668838577675912 0.5374836652344017 0.0888581098819528 0.1586152236285603 5.776185491290492 0.04471479133110874 0.024527907097117798 63.855916968315384 -1.8052011457283172 -0.2267449043937566 NSPGLGS(ph)LVSPHGPHMPPAASIPPPPGLGGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPGLGSLVSPHGPHMPPAASIPPPPGLGGVK 32 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 NS(0.082)PGLGS(0.425)LVS(0.425)PHGPHMPPAAS(0.068)IPPPPGLGGVK;NS(0.275)PGLGS(0.329)LVS(0.329)PHGPHMPPAAS(0.068)IPPPPGLGGVK 70.21300000000001 0.005826 1164420000.0 974280.0 861550.0 804550.0 897250.0 892130.0 1209520.0 1169780.0 556740.0 1490680.0 1013530.0 True False 969034.5847326845 890226.1709320266 917823.6467260371 1010841.7580028852 1005737.4674312114 1125908.7293038242 1113193.2724064426 598286.7658684368 1123321.8880886245 948845.647673311 1.0212773669868007 0.9382202185518512 0.967305534864028 1.0653384567675432 1.059958982683228 1.1866089411535947 1.1732079660544712 0.6305417191252458 1.1838826376483376 1.0 19.85581389208609 NSPLDCGSAS(ph)PNK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPLDCGSASPNK 13 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 NSPLDCGSAS(1)PNK;NSPLDCGSAS(1)PNK 323.91 2.3633999999999992e-51 456190000.0 798800.0 488130.0 447360.0 377000.0 416900.0 722740.0 659650.0 622710.0 992120.0 656490.0 True False 794499.3495550231 504377.1119691844 510344.3994771737 424728.1613453195 469989.7438401035 672778.6849469589 627740.2093922881 669179.7822573096 747625.3197268938 614592.2461506336 1.2927259569758633 0.8206695010037013 0.830378844955507 0.691073087897729 0.7647179846211586 1.0946748664025028 1.0213929858764148 1.0888191096594098 1.216457455181845 1.0 19.22927004008133 2.723074952495595 23.743881870688767 1.084342837971224 0.8633787567050966 0.2875144505297852 0.15979135171254572 524.7778514566178 804630.2663476143 0.05229756293980038 0.049496453145832245 528.5364611046596 -2.723074952495595 -0.22096408126612754 NSPLDELEEGEIRS(ph)DSETSKPQESFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPLDELEEGEIRSDSETSKPQESFEK 27 2 Q9UKL3;A0A087WTW5 Q9UKL3 CASP8AP2 CASP8-associated protein 2 1 NSPLDELEEGEIRS(0.993)DS(0.006)ETSKPQESFEK 119.36 0.00013637 66896000.0 66590.0 36925.0 41977.0 34522.0 33903.0 59600.0 59424.0 53892.0 88150.0 59745.0 True False 66231.48683884444 38154.026303366154 47886.99672937524 38892.48166037958 38220.34609117542 55479.99228330901 56549.43409827533 57913.694698031 66426.6136494836 55932.02294973211 1.18414252419171 0.6821499436495689 0.8561642187054955 0.6953526729282344 0.6833356648931733 0.991918213528065 1.0110385985698764 1.0354300031321928 1.1876311663031267 1.0 15.771386890219228 2.5600635316457647 5.267591880787871 1.0512253586424432 0.8080700212724645 0.37880100156875895 0.14534889303931922 0.22753593920348247 10.687143367463278 0.04671472218520608 0.04350857012521364 363.13117226203724 -2.5600635316457647 -0.24315533736997863 NSPMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 43 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 NS(0.03)PMAQT(0.97)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 121.78 4.130499999999999e-09 342930000.0 71950.0 57045.0 50679.0 56938.0 54974.0 74571.0 76710.0 58804.0 86237.0 65055.0 True False 71562.62919439653 58943.7083405693 57814.1626902353 64146.34496201531 61974.61304357366 69416.08229125226 72999.24423934265 63192.25308066163 64985.0468665969 60903.13420361241 1.175023750914807 0.9678271752568213 0.9492805821281708 1.0532519516575312 1.017593164193801 1.1397784892182923 1.1986122749494355 1.0375862245347867 1.067023031184861 1.0 15.894228853718145 2.7590905438487234 24.217285685451646 1.0956046700165942 1.0255160801335794 0.11204936392985188 0.076295251645766 1009.4608950708399 1190766.5590257982 0.023363886371419975 0.02475153639503406 574.236169308045 -2.7590905438487234 -0.0700885898830148 NSPNNIS(ph)GISNPPGTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPNNISGISNPPGTPR 17 0 Q9BWW4-2;Q9BWW4;Q9NW25;A0A087WVT6;Q9BWW4-3 Q9BWW4-2 SSBP3 Single-stranded DNA-binding protein 3 1 NSPNNIS(1)GISNPPGTPR 334.47 4.1611999999999996e-72 197770000.0 93597.0 79260.0 71125.0 73763.0 76314.0 100050.0 100720.0 81504.0 115640.0 88121.0 True False 93093.08415160436 81898.12118631823 81138.78177041757 83101.3882369093 86032.13555148403 93133.77899236696 95847.78881223567 87586.24234892611 87142.07149661132 82497.04233581624 1.1284414751822907 0.9927400894318124 0.98353564531599 1.007325667490393 1.0428511509694818 1.1289347636640394 1.1618330318082588 1.0616894844834988 1.0563054023426295 1.0 16.332054776678333 2.944745708897882 6.657498832246592 1.0900374084228202 1.0225650132597586 0.16756507928994668 0.05529495717759344 0.3366940483012333 33.018976047471824 0.01690890263185796 0.018142655456526293 880.5331461924526 -2.944745708897882 -0.06747239516306158 NSPNNISGISNPPGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 NSPNNISGISNPPGTPR 17 0 Q9BWW4-2;Q9BWW4;Q9NW25;A0A087WVT6;Q9BWW4-3 Q9BWW4-2 SSBP3 Single-stranded DNA-binding protein 3 1 NSPNNISGIS(0.055)NPPGT(0.944)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR 258.37 4.0988e-26 642690000.0 447430.0 485220.0 444720.0 471330.0 433990.0 535570.0 530590.0 438320.0 562420.0 415770.0 True False 445021.0865941462 501370.2543783164 507332.71042446466 531000.3296734461 489256.0540397377 498547.30649617134 504923.33464936516 471029.6641438616 423819.12704189 389235.2026413943 1.1433217848082151 1.2880907250319624 1.3034091135170902 1.3642145573422384 1.256967639924628 1.2808381747410633 1.2972190881577466 1.2101414798748953 1.0888509676560734 1.0 18.570282668573075 1.2059576845160846 1.8441779062930095 1.0017648743494854 1.2810062417384416 0.7589072845494647 0.052629859206391044 0.14715046915453533 0.9001645158992366 0.04864434000318394 0.014210468003428949 16.067846883154914 -1.2059576845160846 0.2792413673889562 NSPRPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSPRPSPK 8 1 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 NSPRPS(1)PK 71.555 0.029335000000000007 224580000.0 137630.0 85011.0 93241.0 82287.0 80153.0 105870.0 110470.0 103410.0 171990.0 103050.0 True False 136889.01537213055 87840.53974476526 106368.52233469949 92704.5257629238 90360.00944594834 98551.45609117318 105126.14406361857 111126.97930534017 129605.36904792607 96473.26077445631 1.4189321919175277 0.9105169560934259 1.102569991734572 0.9609349266182327 0.9366326868250046 1.0215416717547825 1.089692037147907 1.151894093899683 1.3434330715837306 1.0 16.557841509560504 1.757088231550293 2.955409368741609 1.1895307652530112 1.0453880711374033 0.07729521944199313 0.15532327884365274 0.4689047258387312 8.314098281795246 0.08544250396043795 0.04047008070826051 57.15947504390216 -1.757088231550293 -0.14414269411560787 NSPTFKS(ph)FEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSPTFKSFEEK 11 1 H0YC42;P55327-2;P55327-4;P55327-3 H0YC42;P55327-2 1 NSPT(0.004)FKS(0.996)FEEK;NS(0.002)PT(0.064)FKS(0.934)FEEK;NSPTFKS(1)FEEK 169.37 1.0277e-05 1910190000.0 1752960.0 1211040.0 1030460.0 1477670.0 1196440.0 1758040.0 1739580.0 1556010.0 3352370.0 2066570.0 True False 1743522.2581321641 1251348.734310861 1175539.8110811156 1664742.8704910814 1348799.5421445281 1636510.8327810161 1655429.8695590615 1672127.3674586802 2526223.3329565474 1934679.7333204094 0.9011942535521527 0.646798905658263 0.60761468207639 0.86047465211927 0.6971694171983909 0.8458820364920768 0.8556609350106319 0.8642915613680815 1.3057578933857423 1.0 20.88366333187375 1.4234624572528254 3.7619099560094575 1.1498350867344855 0.7696980156232781 0.6138104905818818 0.1172332072936023 0.137418229717248 3.4020635918928614 0.0842414122076833 0.02949733904751175 26.513218886008882 -1.4234624572528254 -0.3801370711112074 NSPTFKS(ph)FEEKVENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPTFKSFEEKVENLK 16 2 H0YC42;P55327-2;P55327-4;P55327-3 H0YC42;P55327-2 1 NS(0.031)PT(0.181)FKS(0.788)FEEKVENLK;NSPT(0.003)FKS(0.997)FEEKVENLK 133.94 1.6162000000000002e-05 1228390000.0 824560.0 622370.0 544930.0 894020.0 613280.0 962910.0 1112380.0 847710.0 2432300.0 1147100.0 True False 820120.6605772283 643085.20921939 621651.4073835304 1007202.8403340642 691377.5728046513 896346.2981463284 1058569.929695736 910970.4247841577 1832892.256150187 1073891.0959182796 0.7636907165860675 0.5988365223100118 0.5788775135079772 0.9379003552243903 0.643806039022474 0.8346715058474962 0.9857330354253077 0.8482893919566311 1.706776658375111 1.0 20.03441626530583 1.3763347967920805 6.330345011835322 1.350811502824608 0.7707788680396161 0.5667012294285302 0.20327412485817714 0.14126690571388464 7.1947424826924955 0.13377373461746628 0.0485060244467673 23.786732947325415 -1.3763347967920805 -0.5800326347849918 NSPTFKS(ph)FEER ddPTM_BT-474_Trastuzumab_2h_R1 2 NSPTFKSFEER 11 1 Q16890-5;E9PPQ1;J3KNE7;Q16890;E9PNK6 Q16890-5 TPD52L1 Tumor protein D53 1 NSPT(0.023)FKS(0.977)FEER;NSPT(0.029)FKS(0.971)FEER 128.74 0.00015715 1675350000.0 1674730.0 1599010.0 1326580.0 2257800.0 1894530.0 2203300.0 2070100.0 1958640.0 4153900.0 2480800.0 True False 1665713.4397599967 1652232.0812280425 1513350.9331599341 2543637.2485025525 2135787.1657409244 2050991.0570103172 1969961.3544500507 2104803.662572396 3130227.004408285 2322473.220080264 0.7172153484303385 0.7114106061343268 0.6516117904290122 1.095227805647053 0.9196175642736205 0.8831064398406435 0.8482170375174313 0.9062768278118852 1.3477989659231056 1.0 21.14723053063387 4.891611905492898 0.2913077784820694 1.0685188411251252 0.30814373226321073 0.41647161078223405 0.14931155301559837 9.469993406655043 0.6181837715011252 0.17851591326258137 2.6289021905952357 77913.35495281428 -4.891611905492898 -0.7603751088619144 NSPTPATS(ph)TESLSPLHNVALR ddPTM_BT-474_Trastuzumab_2h_R1 3 NSPTPATSTESLSPLHNVALR 21 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 NSPT(0.003)PAT(0.058)S(0.878)T(0.06)ESLSPLHNVALR;NSPTPAT(0.002)S(0.979)T(0.02)ESLSPLHNVALR;NSPT(0.001)PAT(0.104)S(0.791)T(0.104)ESLSPLHNVALR 206.3 2.7610000000000003e-22 519940000.0 186618.0 228132.0 228400.0 238500.0 238042.0 257186.0 276592.0 230940.0 275632.0 249629.0 True False 185613.26942320904 235725.23571129405 260556.73471161153 268694.0755460439 268355.23771452607 239407.3371707232 263212.1882759521 248173.9154895585 207706.18687957435 233697.46350186097 0.7942459735842661 1.0086769115036498 1.114931804595888 1.1497517838652291 1.1483018843821944 1.0244327584189494 1.1262945875912604 1.0619452679150805 0.888782376013766 1.0 17.834282549964716 4.699680274695838 3.030158429206629 1.0734181716098319 0.7617007312897953 0.5250663981154127 0.07634394924273032 0.24718241658277443 3.5192842677613663 0.01867755113963081 0.1764474092330297 50081.83980166106 -4.699680274695838 -0.31171744032003657 NSQDDYDEER ddPTM_BT-474_Trastuzumab_2h_R1 1 NSQDDYDEER 10 0 O76094-2;O76094;R4GNC1;D6RDY6 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 120.54 0.0064357 0.0 129760.0 93420.0 78339.0 98235.0 115880.0 106200.0 115820.0 103820.0 121090.0 106640.0 False True 129061.38657769126 96529.42822641757 89368.4502652055 110671.54092773852 130636.63112542871 98858.64396790971 110217.34412463379 111567.57558727806 91248.99202286985 99834.14390090262 1.292757983739513 0.9668979414721542 0.8951691953598001 1.1085540137209302 1.3085365990126712 0.9902287945298432 1.1040045000439704 1.1175292462869444 0.9140058546848003 1.0 16.607245690222857 1.243146613486515 24.98278221628455 0.9570029094688014 1.0922725692586315 0.16752797455467316 0.12517353581267693 195.45991722721732 1064838.1526267168 0.09041608159951199 0.03053764673220341 17.50437519141742 -1.243146613486515 0.13526965978983008 NSQEDS(ph)EDS(ph)EDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 9 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NS(0.005)QEDS(0.995)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK 235.45 1.3293e-16 43620430000.0 42635730.0 21425820.0 21146600.0 15987980.0 17755270.0 30335660.0 30044250.0 31586400.0 58714320.0 25696550.0 True False 42406183.96695492 22138965.46651831 24123857.4704578 18012056.62871547 20016298.390769675 28238627.22666254 28590894.84731938 33943537.56048926 44244962.56757968 24056574.179076694 1.76276903150399 0.9202875397683917 1.0027968775138243 0.7487373927240867 0.8320510743453627 1.1738424189768135 1.1884857184771733 1.410988003022134 1.8392046281495027 1.0 24.51992787169821 1.9391646403550145 2.094384493626261 1.46620648975421 1.035258740716402 0.17728741509911627 0.3226440585715736 0.4601595808884274 3.7227390563605995 0.18772863492292227 0.09369994676170593 86.92899132677934 -1.9391646403550145 -0.43094774903780797 NSQEDS(ph)EDSEDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 8 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 NSQEDS(1)EDSEDKDVK;NSQEDS(0.817)EDS(0.183)EDKDVK;NSQEDS(0.932)EDS(0.068)EDKDVK;NSQEDS(0.986)EDS(0.014)EDKDVK;NSQEDS(0.982)EDS(0.018)EDKDVK;NSQEDS(0.992)EDS(0.008)EDKDVK;NSQEDS(0.977)EDS(0.023)EDKDVK;NSQEDS(0.999)EDS(0.001)EDKDVK 339.58 7.454399999999998e-69 7014791000.0 7278430.0 3869097.0 3230772.0 3029193.0 3123703.0 5728150.0 5655130.0 5378160.0 10553660.0 4737590.0 True False 7239243.741589591 3997877.5547264754 3685636.615226362 3412688.523209841 3521488.061411762 5332176.473114703 5381569.757205501 5779505.608943119 7952851.904798748 4435232.95014514 1.6322127434935951 0.9013906596711334 0.8309905379616536 0.769449668500087 0.7939804066653418 1.2022314347525334 1.2133680051753297 1.3030895274066694 1.7931080496095466 1.0 22.08057844999329 2.225738609712914 1.7813584427347435 1.3839872190096465 0.9668230396350102 0.22289516552019517 0.29680098716424697 0.48812132788772017 3.0868460358694847 0.15403063091994135 0.09578996605040159 168.16616090629398 -2.225738609712914 -0.41716417937463635 NSQEDSEDS(ph)EDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 NSQEDS(0.063)EDS(0.937)EDKDVK;NSQEDS(0.003)EDS(0.997)EDKDVK;NSQEDS(0.064)EDS(0.936)EDKDVK 325.61 5.286199999999998e-57 12009000000.0 3161930.0 1667810.0 1376390.0 1274920.0 1345130.0 2345800.0 2400870.0 2171720.0 4385830.0 2014950.0 True False 3144906.520203448 1723322.0476375653 1570173.7482036562 1436324.7412795073 1516424.332289851 2183640.3674192317 2284730.7458859426 2333784.7741707107 3305000.963611063 1886354.1659145132 1.667187730188929 0.9135729009838885 0.8323854430816435 0.7614289867900658 0.8038916337615114 1.157598295631082 1.2111886448313351 1.2371933205020813 1.7520574997690233 1.0 20.847169138995387 2.17051021150152 1.7700321428873544 1.3497488004718876 0.9744672093843558 0.18379106064091477 0.29810094745570936 0.5551003581183924 3.4083579196399496 0.1625386469266658 0.09543346174754072 148.0847073795029 -2.17051021150152 -0.3752815910875318 NSQEDSEDSEDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 ; 213.49 3.1673e-10 789480000.0 1053390.0 564590.0 525760.0 437260.0 422180.0 697950.0 694190.0 659310.0 1263160.0 635370.0 False True 1047718.6652826323 583382.0368481381 599782.4380121569 492617.0711667222 475942.1205430918 649702.359297577 660609.3776366741 708511.0601083433 951871.143476822 594820.1426323757 1.7614041458750116 0.9807704800755094 1.0083425140208275 0.8281781934731498 0.8001445923414944 1.092266910166021 1.1106035762560902 1.191134948747412 1.6002671652380793 1.0 19.182093977213498 -0.05911083799202463 8.325373212464248 1.0000000071120387 1.1242439723534319 0.015624312772912208 0.2941032654152524 19174179.59975913 2303101.382748682 0.28167360126590335 0.06831588294397477 0.8727486023811626 0.05911083799202463 0.12424396524139314 NSQGSEMFGDDDKRK ddPTM_BT-474_Trastuzumab_2h_R1 5 NSQGSEMFGDDDKRK 15 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;;; 221.49 8.595200000000001e-13 1117190000.0 971571.0 637342.0 617352.0 525101.0 598920.0 906666.0 967381.0 820585.0 1443955.0 849084.0 False True 966340.1696876856 658555.5431886243 704269.795480221 591578.732760182 675188.9119230391 843990.3134821927 920585.0852757086 881821.2195461987 1088111.6382557014 794894.7321826145 1.2156831974899591 0.8284814536138246 0.8859912727644371 0.7442227364318174 0.8494067007704426 1.0617636264424246 1.1581220103798835 1.1093559736204344 1.3688751405710975 1.0 19.600404291546152 2.5351711258173033 3.289115066251002 1.1599505269859491 0.8913365495941102 0.4119801067950354 0.14324583378130532 0.2360905542217546 5.073473045678416 0.04962587030328717 0.04448574254734956 342.9028745520002 -2.5351711258173033 -0.2686139773918389 NSQKHS(ph)PTSEPTPPGDALPPVSSPHTHR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4;Q9H6S3-2;A0A087WX39 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 NS(0.032)QKHS(0.756)PT(0.21)S(0.002)EPTPPGDALPPVSSPHTHR;NS(0.401)QKHS(0.524)PT(0.037)S(0.037)EPT(0.001)PPGDALPPVSSPHTHR 146.34 4.4355e-08 1212970000.0 547860.0 653910.0 723110.0 698600.0 754930.0 1044060.0 1048770.0 231811.0 1127660.0 748260.0 True False 544910.3826329681 675674.9990530574 824917.602615206 787042.6883709282 851065.8606793236 971886.5896528792 998036.9884095334 249109.91393240672 849763.3028698447 700505.4061823844 0.7778817662559119 0.9645535824417862 1.1776034779101041 1.1235354951222358 1.2149311813558497 1.3874076931817965 1.4247384525533318 0.35561454877273024 1.2130717270276132 1.0 19.41803665920057 1.7565426362704981 24.999999998649784 0.79520284914991 1.156923439174684 0.19422837103749957 0.2683706911853625 9.551061725498037 13292.363679668799 0.12400327129592995 0.06876710180805598 57.08771185060954 -1.7565426362704981 0.3617205900247741 NSQKHSPT(ph)SEPTPPGDALPPVSSPHTHR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4;Q9H6S3-2;A0A087WX39 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 NS(0.208)QKHS(0.208)PT(0.257)S(0.257)EPT(0.071)PPGDALPPVSSPHTHR 73.805 0.005367899999999999 429710000.0 94886.0 101920.0 121670.0 102050.0 131200.0 186210.0 170330.0 50325.0 191710.0 123250.0 True False 94375.14431882575 105312.34558805902 138800.07842540176 114969.51953657765 147907.54231667466 173337.7409911907 162090.48717621228 54080.50704517204 144465.63928238823 115384.07948036611 0.817921716270092 0.9127112341870274 1.2029396000773238 0.9964071304667382 1.2818713204003398 1.5022673992098368 1.404790746749371 0.46869990460316874 1.252041355557815 1.0 16.81608465128652 1.7567176977271286 24.999999999995737 0.8567834976267291 1.1635747793876092 0.14857003522474832 0.2694705621089061 11.907600661178925 16412.013772009625 0.12855174004291703 0.07128929069856185 57.110728197606925 -1.7567176977271286 0.3067912817608801 NSQKHSPTSEPT(ph)PPGDALPPVSSPHTHR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4;Q9H6S3-2;A0A087WX39 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 NS(0.153)QKHS(0.153)PT(0.184)S(0.184)EPT(0.327)PPGDALPPVSSPHTHR 65.581 0.0080429 680300000.0 103470.0 117570.0 140110.0 138220.0 150420.0 200520.0 193770.0 57412.0 211870.0 164160.0 True False 102912.92901659769 121483.24637743422 159836.27014204848 155718.6378279841 169575.0953908093 186658.52437330762 184396.6048267164 61696.37497222889 159657.47741254806 153683.16825555317 0.6696434631375388 0.7904785394287611 1.040037578326493 1.0132445836166406 1.1034070764914874 1.2145671285415012 1.1998490590725663 0.4014517378353147 1.0388741930870429 1.0 17.22959964074094 -2.7674472967909995 1.8946828101823274 3.070750128429166 0.9272166239177073 0.002266147762452375 0.24124853572467597 10629925.41637776 328381.1441504725 95172383.75945179 0.06359025308774846 0.0017082550104169365 2.7674472967909995 -2.1435335045114585 NSQVLDEDNILNETPKS(ph)PVINLPHETTGASQLEGSTEIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSQVLDEDNILNETPKSPVINLPHETTGASQLEGSTEIAK 40 1 E9PRH6;F8WET0;Q8IW19 E9PRH6 APLF Aprataxin and PNK-like factor 1 NS(0.003)QVLDEDNILNET(0.204)PKS(0.779)PVINLPHET(0.005)T(0.006)GAS(0.002)QLEGSTEIAK 51.494 0.01993 70194000.0 15525.0 15643.0 16347.0 14702.0 17029.0 22749.0 20270.0 17939.0 30540.0 20977.0 True False 15441.41512498965 16163.667798606806 18648.51550932886 16563.271692569986 19197.542211209246 21176.415175385857 19289.46266108038 19277.69927239626 23013.8262150338 19638.229900686754 0.7862936325258958 0.8230715232660332 0.9496026680427402 0.8434197876454621 0.9775597041227174 1.0783260651534237 0.9822403932854367 0.981641388754804 1.1718890313138153 1.0 14.261377277196576 3.908386564329847 0.5254384504247482 1.0511871233413064 0.7265658320676969 0.6594227033175107 0.06508746679824821 1.258262363313479 0.48601844813077805 0.04401495472663814 0.2298276785526344 8098.163938316507 -3.908386564329847 -0.3246212912736095 NSRDGDPLPS(ph)SLSCK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSRDGDPLPSSLSCK 15 1 P53602;H3BP35 P53602 MVD Diphosphomevalonate decarboxylase 1 NS(0.006)RDGDPLPS(0.896)S(0.097)LS(0.001)CK 195.28 4.4701e-08 300300000.0 593150.0 502540.0 442720.0 440210.0 403230.0 609720.0 640420.0 560340.0 791180.0 560720.0 True False 589956.5463051609 519266.7401081552 505051.12780877703 495940.5408642516 454578.9503685424 567571.4915264971 609440.4379580213 602155.4161488664 596204.2902688424 524934.3695434557 1.1238672499540392 0.989203165644822 0.9621224235098734 0.9447667549289629 0.8659729229844436 1.081223719491112 1.1609840645185074 1.1471060976109666 1.1357692025145378 1.0 19.00177753406706 2.5059431963163328 12.873787617772221 1.1263860617998014 0.9750395050999074 0.43358924776169616 0.07281274351466321 1.6276097951476218 726.348401771351 0.023719746176648744 0.022107009942785992 320.5849986922718 -2.5059431963163328 -0.15134655669989394 NSRPEANEALER ddPTM_BT-474_Trastuzumab_2h_R1 4 NSRPEANEALER 12 1 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 ;;; 240.42 3.0135e-16 6976390000.0 3372500.0 3642590.0 3298350.0 3386960.0 3527600.0 3817040.0 3991820.0 3424660.0 4899790.0 3758930.0 False True 3354342.834719975 3763831.406157844 3762729.0102278627 3815748.7887271713 3976818.9502766845 3553177.009145672 3798720.4163667387 3680225.519271115 3692302.408322215 3519031.869218115 0.9532004708628194 1.0695644558041812 1.0692511889822396 1.0843177699254491 1.1300889273163315 1.009702992526505 1.079478833253865 1.0458062490035973 1.0492381272871503 1.0 21.746747148872036 4.740750761543725 24.02764126588277 1.0629247194957454 0.9532004035107243 0.4453991571213761 0.03549546516631368 100.21982951173638 1099360.616308552 0.008034234285555 0.053658824997492555 55049.168254728334 -4.740750761543725 -0.10972431598502108 NSS(ph)EASSGDFLDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSSEASSGDFLDLK 14 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 NS(0.182)S(0.818)EASSGDFLDLK 293.17 1.6347999999999999e-43 354800000.0 809650.0 559660.0 532870.0 420470.0 458610.0 718710.0 707200.0 639380.0 893740.0 603250.0 True False 805290.9343605724 578287.9447783859 607893.4642109296 473701.4588882397 517011.2651055645 669027.2693613595 672990.0342336482 687093.7823058534 673489.7525024341 564750.0685316909 1.425924456201077 1.0239714468417729 1.0763937856464691 0.8387807019126692 0.9154691498307495 1.1846430954860825 1.1916599425713632 1.2166333757023657 1.1925447911028297 1.0 19.10725301512436 2.686985622572574 24.79194678904111 1.1769732466973868 1.0433757097977239 0.08663214330386426 0.15473814506784073 629.6599685777817 302674.7280632173 0.05084249201122295 0.04793481701168537 486.3911033258207 -2.686985622572574 -0.13359753689966292 NSS(ph)GPQSGWMK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSSGPQSGWMK 11 0 F8VXG7;Q99590-2;Q99590 F8VXG7 SCAF11 Protein SCAF11 1 NS(0.009)S(0.991)GPQSGWMK 102.73 0.0029677 87661000.0 272480.0 216440.0 217330.0 202910.0 168300.0 253740.0 259830.0 228240.0 355940.0 276370.0 True False 271012.99795537425 223644.07455925705 247928.1749337765 228598.3851951688 189732.0074077466 236199.5510397119 247261.03025301 245272.4277792362 268223.3563516417 258731.82998773875 1.0474667843079744 0.8643856249532789 0.9582438115384789 0.883534063845187 0.733315291809044 0.9129126132293245 0.9556652935385942 0.9479793336245471 1.0366848035835126 1.0 17.9810980241714 1.6804004188729582 1.583587411270069 1.0132727011585252 0.8953754931252568 0.2493401511300678 0.07609565427608421 0.5110746412070402 2.533642084500651 0.061553122436276184 0.023124627011634237 47.9071592062913 -1.6804004188729582 -0.11789720803326842 NSS(ph)PAPPQPAPGK ddPTM_BT-474_Trastuzumab_2h_R1 10 NSSPAPPQPAPGK 13 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 NS(0.003)S(0.997)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NS(0.017)S(0.983)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NS(0.008)S(0.992)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NS(0.003)S(0.997)PAPPQPAPGK;NS(0.018)S(0.982)PAPPQPAPGK;NS(0.068)S(0.932)PAPPQPAPGK 260.72 5.2424e-24 22646110000.0 13964640.0 10725480.0 9945002.0 9330659.0 9929180.0 13506020.0 12983930.0 12657210.0 15905790.0 11776590.0 True False 13889455.929857347 11082471.11811043 11345171.838093016 10511919.472705979 11193602.21813931 12572380.627151305 12355847.702470709 13601755.28221007 11986021.181166431 11024997.943754043 1.2598148317774605 1.0052129873084417 1.0290407214561306 0.9534622615200815 1.0152929075583896 1.1403521970064308 1.120712018769185 1.2337195300717338 1.0871676568390503 1.0 23.39427505092076 2.727755849590338 23.117106710488383 1.1395122982943908 1.0431215077770923 0.0736709510098642 0.09425356061002146 435.5160111741681 931795.0156072748 0.030110862915782476 0.02870205395053589 534.2639240158479 -2.727755849590338 -0.09639079051729849 NSS(ph)PEPQALTPSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSSPEPQALTPSSK 14 0 P98168;P98169 P98168 ZXDA;ZXDB Zinc finger X-linked protein ZXDA;Zinc finger X-linked protein ZXDB 1 NS(0.026)S(0.974)PEPQALTPSSK 172.26 1.4120999999999998e-07 0.0 187710.0 166610.0 163930.0 159980.0 150920.0 191450.0 193320.0 178970.0 263260.0 210650.0 True False 186699.39021654162 172155.51313212837 187009.9190948968 180233.45159688106 170138.7674270771 178215.51212482422 183968.37304588335 192325.65019124595 198383.1005032679 197206.13665346184 0.9467220107080995 0.8729723935246834 0.9482966517594621 0.9139342956329709 0.8627458065671224 0.9037016552785643 0.9328734702062522 0.9752518529847168 1.005968190796589 1.0 17.589344920583503 1.718523889083528 1.988866321311834 1.0025014213149295 0.906779980139617 0.6952480748689087 0.02570194946027238 0.16565089279916745 1.347565041516174 0.017964847167881045 0.007300673466219152 52.302673533822585 -1.718523889083528 -0.09572144117531245 NSS(ph)PQRPAVSAPVGASEIAEETRPGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSSPQRPAVSAPVGASEIAEETRPGQR 27 2 P0CG23 P0CG23 ZNF853 Zinc finger protein 853 1 NS(0.009)S(0.991)PQRPAVSAPVGASEIAEETRPGQR;NS(0.04)S(0.96)PQRPAVSAPVGASEIAEETRPGQR 165.31 5.0991e-12 570220000.0 141517.0 145006.0 156462.0 141318.0 133914.0 143810.0 155438.0 135510.0 190666.0 143212.0 True False 140755.08819601676 149832.437052022 178490.48960791662 159208.84431033905 150967.15412953641 133868.75319232664 147918.8701091766 145622.4443058372 143678.9190935049 134072.08755003815 1.0498463234823907 1.1175513098213063 1.3313023826924506 1.187486875304447 1.1260147946394339 0.9984833953030259 1.103278637725176 1.0861503461821482 1.071654225118866 1.0 17.03264938845278 2.9967478044071796 5.0904086583573305 1.0633108270535285 1.1774795143523809 0.36683007113669575 0.07355634124353042 0.21411076853595498 16.654761566391077 0.023177353805600508 0.026424795295824005 992.5395115457517 -2.9967478044071796 0.11416868729885232 NSSAVEQDHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 NSSAVEQDHAK 11 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 0 ;;; 140.01 3.8801e-05 707430000.0 951780.0 803420.0 769990.0 740700.0 786520.0 951390.0 944860.0 911460.0 1415270.0 947170.0 False True 946655.7222326983 830161.349022354 878397.8991269427 834472.5440543174 886678.6599307234 885622.648631165 899153.5120842824 979477.7735001004 1066495.6721463958 886720.7996869665 1.0675916506829324 0.9362150400841175 0.9906138430913519 0.9410769932868452 0.9999524768605202 0.9987615593812741 1.0140210000731966 1.1046067418807355 1.2027412377412305 1.0 19.75812039146033 1.7929933750236486 3.022100856637963 1.11729452450723 0.9861595607271346 0.43608458022236374 0.05714559740732015 0.18986670586002327 3.2893822595177835 0.02989290975783888 0.014709624655947067 62.085956321104824 -1.7929933750236486 -0.13113496378009548 NSSLGSPSNLCGS(ph)PPGSIR ddPTM_BT-474_Trastuzumab_2h_R1 5 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 NSSLGSPSNLCGS(0.991)PPGS(0.009)IR;NSSLGSPSNLCGS(0.998)PPGS(0.002)IR;NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPSNLCGS(0.998)PPGS(0.002)IR 412.81 7.744699999999997e-148 2503700000.0 870589.0 836247.0 814332.0 752799.0 798397.0 1083180.0 1020440.0 863331.0 1177150.0 962820.0 True False 865901.8455555316 864080.9758730134 928982.8672993678 848103.2762137788 900068.1254802285 1008302.3161314536 971077.4187406431 927757.1431259891 887057.1555018678 901372.0032883264 0.9606487026406467 0.9586285936558154 1.030632040833655 0.9409026163668095 0.9985534520671363 1.1186306125029744 1.0773325721211906 1.029272198095133 0.9841188235997611 1.0 19.78176311492235 2.987393221996084 24.75030086249733 1.0467213047435522 0.9750720292720767 0.3813980197076724 0.04152987251028248 539.6697174015038 1059511.2039317633 0.012650326846919645 0.014044293418913428 971.3890912081594 -2.987393221996084 -0.07164927547147548 NSSLLS(ph)FDNEDENE ddPTM_BT-474_Trastuzumab_2h_R1 2 NSSLLSFDNEDENE 14 0 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 NSSLLS(1)FDNEDENE;NSSLLS(1)FDNEDENE 212.61 2.3015e-09 187927000.0 406840.0 304240.0 262270.0 296630.0 343580.0 367220.0 259390.0 245860.0 434570.0 326060.0 True False 404649.6186441736 314366.4444830363 299195.3363082935 334183.3275858409 387332.87644179154 341834.9457428987 246842.31473397318 264207.3216517836 327476.04643966065 305250.57164598943 1.3256309937838904 1.0298635733518589 0.9801630663456434 1.0947836257401211 1.2689013958375024 1.119850304946644 0.8086547173456091 0.8655424303617514 1.0728105918813706 1.0 18.219634471402355 2.2632008469152156 21.229700255011895 0.9149436118127304 1.1286956469455176 0.40499554759972456 0.11721499116657699 39.760085837838254 34256.13884687423 0.04184308677928182 0.03497423514467273 183.3162003506235 -2.2632008469152156 0.21375203513278718 NSSNTSVGS(ph)PSNTIGR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSSNTSVGSPSNTIGR 16 0 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 NSSNTSVGS(1)PSNTIGR;NSSNTS(0.001)VGS(0.999)PSNTIGR;NSSNTSVGS(0.996)PS(0.004)NTIGR;NSSNTSVGS(0.975)PS(0.025)NTIGR 394.4 1.268099999999999e-121 2361690000.0 1695920.0 1581370.0 1377810.0 1448690.0 1481900.0 1758490.0 1752390.0 1703750.0 2149180.0 1801960.0 True False 1686789.355154427 1634004.9444916476 1571793.6718607948 1632094.0054624681 1670611.1810905486 1636929.7253402025 1667620.2009201124 1830892.4764672008 1619543.386536553 1686957.3700644278 0.9999004035828158 0.9686106913473707 0.9317328936419805 0.9674779187811579 0.9903102536768579 0.9703444523187241 0.9885372508591744 1.085322313981933 0.9600381226436682 1.0 20.68599208605948 1.9853664875699328 23.698184086292628 1.0276827542901585 0.9709226268343998 0.2268514771836817 0.033813343623607 352.9832215137363 571636.4478761477 0.013304531492918882 0.008927118086188717 96.68664432668133 -1.9853664875699328 -0.05676012745575876 NSSQSGGKPGS(ph)SPITK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSSQSGGKPGSSPITK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 NSSQSGGKPGS(0.871)S(0.129)PITK;NSSQSGGKPGS(0.5)S(0.5)PITK;NSSQSGGKPGS(0.5)S(0.5)PITK 241.51 1.1166e-14 1244600000.0 1939150.0 1317450.0 1291640.0 1181420.0 1340370.0 1961420.0 1901560.0 1809590.0 2996930.0 1934490.0 True False 1928709.8318598208 1361300.5268346567 1473491.6848638617 1330987.6508662768 1511058.174504581 1825831.652086042 1809574.2781353719 1944630.7947118299 2258376.7583045615 1811029.1919997858 1.0649799795496884 0.7516723269001937 0.8136211671092908 0.7349343990400097 0.8343643388961781 1.0081735071702025 0.9991966369891545 1.073771092869308 1.2470128964684455 1.0 20.788378370617167 2.39920572509386 1.47805759186972 1.1044185576066214 0.8268380331831692 0.5412454587830262 0.10548324647642013 0.29466589905299106 1.2991604356966722 0.05335167819754289 0.03729221416290852 250.7296677037267 -2.39920572509386 -0.27758052442345227 NSSQSGGKPGSS(ph)PITK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSSQSGGKPGSSPITK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 NSSQSGGKPGS(0.19)S(0.81)PITK;NSSQSGGKPGS(0.036)S(0.963)PITK;NSSQSGGKPGS(0.212)S(0.788)PITK 242.8 3.4823e-20 11704100000.0 4437300.0 2739240.0 2832110.0 2702370.0 2623430.0 4021250.0 4242690.0 3955830.0 6355800.0 3849990.0 True False 4413410.069830378 2830413.947494449 3230846.4708585916 3044489.764919763 2957508.260212145 3743270.452504308 4037454.876050272 4251034.121897722 4789498.25335664 3604280.342057731 1.2244913411232334 0.7852923965061299 0.8963915578814435 0.8446872817838648 0.8205544462514435 1.0385625138046908 1.1201833633577005 1.1794404758955988 1.3288362166141197 1.0 21.781279798113523 2.366617493939813 2.4132901805962086 1.1787482045594475 0.9030539190844686 0.40907915978046017 0.13624485369120493 0.255443663367778 3.0488828905709484 0.053351955054611294 0.04126780748640151 232.60416875972547 -2.366617493939813 -0.2756942854749789 NSSS(ph)PVS(ph)PASVPGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 NS(0.011)S(0.09)S(0.898)PVS(1)PASVPGQR;NSS(0.008)S(0.992)PVS(1)PASVPGQR 265.73 9.6849e-21 306570000.0 693470.0 571250.0 474640.0 514900.0 504320.0 743870.0 636470.0 587330.0 842320.0 685490.0 True False 689736.4345717601 590263.7109220835 541465.1863551626 580086.2872061135 568542.1626611688 692448.0177816299 605681.5145484864 631159.5470013096 634741.5225097344 641741.4413224848 1.0747886768078565 0.9197843132986436 0.8437435258027356 0.9039252413100923 0.8859364941268735 1.0790140283829113 0.9438092595365403 0.9835106576577504 0.9890923067110562 1.0 19.29163262465481 2.7709012185610455 24.98364057484703 0.9922650044256572 0.9195548802427693 0.24065348525721153 0.06421785120484289 986.4302641084018 762031.7803392058 0.019810026170412963 0.021010476323709414 590.0668526268154 -2.7709012185610455 -0.07271012418288791 NSSS(ph)PVSLDAALPESSNVYR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSSSPVSLDAALPESSNVYR 20 0 Q70EL1-7;Q70EL1;H7C296;H7C1E9;Q70EL1-6;R4GN32 Q70EL1-7 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 NSS(0.017)S(0.983)PVSLDAALPESSNVYR;NS(0.003)S(0.103)S(0.894)PVSLDAALPESSNVYR;NSS(0.001)S(0.999)PVSLDAALPESSNVYR;NSSS(1)PVSLDAALPESSNVYR 455.12 2.1032999999999988e-198 847400000.0 414632.0 357791.0 328417.0 341377.0 354177.0 419288.0 406427.0 382919.0 437603.0 391697.0 True False 412399.6673819461 369699.8571457734 374655.25894826325 384595.2931978278 399279.3415784519 390303.6074577868 386766.57330808643 411494.3602032834 329761.60422977904 366698.56211132684 1.1246285368764135 1.008184638132111 1.0216981948091763 1.0488050211690432 1.0888489425198067 1.064371796852843 1.054726179129841 1.1221597320535903 0.8992716042602479 1.0 18.484235083439962 1.2366858936879372 24.999999990626517 0.9496357952169908 1.065547081328901 0.5500135585041719 0.04233634805295287 36.69209502169477 489235.0588663099 0.033850144303858035 0.010112321434982979 17.245901197806408 -1.2366858936879372 0.11591128611191015 NSSS(ph)PVSLDAALPESSNVYRDPSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSSSPVSLDAALPESSNVYRDPSAK 25 1 Q70EL1-7;Q70EL1;H7C296;H7C1E9;Q70EL1-6;R4GN32 Q70EL1-7 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 NSS(0.004)S(0.996)PVSLDAALPESSNVYRDPSAK;NSS(0.034)S(0.966)PVSLDAALPESSNVYRDPSAK;NS(0.001)S(0.169)S(0.826)PVS(0.004)LDAALPESSNVYRDPSAK 250.25 1.0466e-39 1332710000.0 824140.0 812540.0 702660.0 719930.0 811510.0 983010.0 960610.0 941250.0 1295380.0 946840.0 True False 819702.9218105626 839584.902709198 801588.420369793 811073.0641839143 914850.9883033879 915056.8324566368 914141.6244134395 1011490.8545706552 976150.9562027011 886411.8605694934 0.9247427277021404 0.9471724601809699 0.9043069661261032 0.9150070077614078 1.032083424194734 1.0323156459895966 1.0312831597561551 1.1411070852783967 1.1012385998259917 1.0 19.75761765982923 2.916349651492798 1.2862048764773555 1.0846448020234118 0.9201425224627604 0.7102476491626467 0.04098143058549602 0.2179450890260703 0.7496859589777797 0.017401155164006258 0.01937622333297606 824.8018976879572 -2.916349651492798 -0.16450227956065144 NSSS(ph)PVSPASVPGQR ddPTM_BT-474_Trastuzumab_2h_R1 4 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 NSS(0.001)S(0.999)PVSPASVPGQR;NSS(0.039)S(0.961)PVSPASVPGQR;NSS(0.026)S(0.974)PVSPASVPGQR;NSS(0.023)S(0.975)PVS(0.002)PASVPGQR 308.42 4.5349e-56 4608210000.0 4905590.0 4347180.0 4108140.0 4190230.0 4198110.0 5215110.0 5186480.0 4932820.0 5886150.0 5325900.0 True False 4879178.848502285 4491873.258374201 4686530.403407001 4720712.688366036 4732714.424352553 4854601.720748454 4935590.148122353 5300932.076752418 4435587.202869067 4985996.5022676075 0.9785764683716199 0.9008977957227444 0.9399385661974671 0.9467942238264865 0.9492013125561032 0.9736472375262607 0.989890415261557 1.063164018334465 0.8896089680070539 1.0 22.249450440087212 2.6054458497917925 2.062937006092258 0.9981310160990345 0.9393160355502161 0.15691225496037575 0.043755205543168085 0.44476988402349016 3.759602830724396 0.01663445299248191 0.014989469729822508 403.13067877469615 -2.6054458497917925 -0.058814980548818396 NSSTETDQQPHS(ph)PDSSSSVHSIR ddPTM_BT-474_Trastuzumab_2h_R1 6 NSSTETDQQPHSPDSSSSVHSIR 23 0 Q92613 Q92613 JADE3 Protein Jade-3 1 NSSTETDQQPHS(1)PDSSSSVHSIR;NSSTETDQQPHS(1)PDSSSSVHSIR;NSSTETDQQPHS(0.955)PDS(0.015)S(0.023)S(0.006)S(0.001)VHSIR;NSSTETDQQPHS(0.984)PDS(0.005)S(0.008)S(0.002)SVHSIR;NSSTETDQQPHS(0.999)PDS(0.001)SSSVHSIR;NSSTETDQQPHS(1)PDSSSSVHSIR 314.47 1.7845999999999992e-73 3470910000.0 845080.0 1330876.0 1496948.0 1585813.0 1539982.0 1724325.0 1670713.0 1247728.0 1517864.0 1549724.0 True False 840530.1831772155 1375173.4031284677 1707705.266694734 1786576.7632029308 1736089.579511562 1605126.4713744437 1589894.2294465504 1340839.7991944042 1143806.7555355623 1450819.2875345305 0.5793486414187269 0.9478598850621757 1.1770626992399214 1.2314261180239576 1.1966270330344237 1.106358652084187 1.0958595898930725 0.9241949088455934 0.7883867862546174 1.0 20.46843639940137 -1.651487700776827 9.064474384029875 0.9999854603075554 1.020971777388009 0.0 0.19397091546251888 5.912857573469815e-05 2.2733220874747934e-06 0.1948422570690478 0.045892947030693826 0.022310653903768376 1.651487700776827 0.02098631708045351 NSSTYWEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 NSSTYWEGK 9 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;; 160.75 0.00015134 930330000.0 476182.0 453116.0 387737.0 417356.0 421202.0 514979.0 494278.0 453315.0 729700.0 495090.0 False True 473618.28902079415 468197.6921455943 442326.99932957994 470193.2268075256 474839.57804015244 479379.71386017103 470367.8848146758 487143.6671869287 549875.2124790492 463492.9323321259 1.0218457628635698 1.010150661391525 0.95433386028985 1.0144560876941235 1.024480730808417 1.0342762109620716 1.0148329176196014 1.051027174752808 1.1863723783495026 1.0 18.822187814221525 1.524781650428726 4.443714708850243 1.100541146220442 1.0107791405761313 0.32721847520739744 0.04675099213594798 0.16143619389847116 6.992459063784108 0.026829227379802374 0.011300893825885588 33.47970714257304 -1.524781650428726 -0.0897620056443107 NSSVNEGSTYHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSSVNEGSTYHK 12 0 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8;H0YHI8;H0YIS4;A0A3B3ISH4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 ; 182.37 1.6967000000000002e-05 289690000.0 317590.0 338060.0 344510.0 349740.0 357280.0 462720.0 447400.0 404730.0 505200.0 420950.0 False True 315880.1307275662 349312.1227384147 393014.01346539945 394017.04814035026 402777.4902355299 430733.25552571705 425757.5527660271 434933.0077772969 380700.22933317267 394084.6106065734 0.8015540881978741 0.8863886417710016 0.9972833317709968 0.9998285584760106 1.022058409273015 1.0929968944048187 1.0803709185971582 1.1036538755163512 0.9660367826777109 1.0 18.588145886345742 4.619258551407669 0.8616839454907972 1.0584043843207502 0.6783057602881474 0.7753542925574755 0.04227081513652099 0.833630358793445 0.5447421797995557 0.01458732672027959 0.29045609335135647 41615.82910292084 -4.619258551407669 -0.38009862403260286 NSSYFVEWIPNNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSSYFVEWIPNNVK 14 0 Q13509;A0A0B4J269;Q13509-2;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1;P04350;K7ESM5;Q9BUF5 Q13509;Q5JP53;P68371;Q13885;Q9BVA1;P04350;K7ESM5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 ; 248.77 1.2553e-17 969020000.0 1690140.0 1382950.0 1243250.0 1243570.0 1307120.0 1686200.0 1553830.0 1528560.0 2375280.0 1558060.0 False True 1681040.474032206 1428980.6547390728 1418288.7934772805 1401005.8344938946 1473573.9840927727 1569636.9628878469 1478665.3066929707 1642628.9090704073 1789924.0711213327 1458623.276877722 1.1524843327816505 0.9796776709870548 0.9723475663388699 0.9604987502275699 1.010249875654702 1.0761085386267502 1.0137403743193718 1.126150209659729 1.2271325293483466 1.0 20.476175891401414 1.7031819409616342 4.989583816523313 1.1337243443956222 1.0188483358489122 0.24350246459975688 0.0741633234132783 0.18402907271904095 10.840573625529833 0.038004748081863354 0.018787982261559068 50.48727619069057 -1.7031819409616342 -0.11487600854670998 NSSYVHGGLDSNGKPADAVYGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 NSSYVHGGLDSNGKPADAVYGQK 23 1 Q13283;E5RH42;E5RIZ6;E5RJU8;Q13283-2;E5RIF8;E5RI46 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 220.23 1.1789e-32 206320000.0 210610.0 186970.0 197500.0 204320.0 213930.0 266320.0 282010.0 274190.0 377450.0 262800.0 False True 209476.09916097092 193193.18342424824 225306.28329922582 230186.89105059826 241172.71743754717 247909.92524984686 268368.09891718195 294651.45010860875 284432.50507087435 246027.8790056005 0.85143236615149 0.7852491522712776 0.9157754162246671 0.9356130369491921 0.9802658073236374 1.0076497275506062 1.0908036113706971 1.1976343953357473 1.1560986755667622 1.0 17.908462280343578 3.018556105266763 0.8059098416906294 1.1407285782030836 0.8253784652756008 0.7709127165367817 0.0587990400285284 0.27237959495588004 0.3938844224869646 0.03445158968521359 0.045547369127873404 1043.652950571269 -3.018556105266763 -0.31535011292748283 NSSYVHGGVDASGKPQEAVYGQNDIHHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSSYVHGGVDASGKPQEAVYGQNDIHHK 28 1 Q9UN86-2;Q9UN86;D6RB17;D6RAC7;D6RE13;D6RBW8;D6RGJ4;D6RBM9;D6REX8;D6RBR0 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ; 183.64 3.9352e-18 1013400000.0 1093590.0 871710.0 1039080.0 961700.0 1048940.0 1416760.0 1297660.0 815070.0 1740010.0 1144370.0 False True 1087702.23294927 900724.3403901776 1185373.4321547328 1083451.1213946785 1182516.2914455247 1318822.7158943103 1234887.2282574032 875894.6622415978 1311207.8504394565 1071335.3268555508 1.015277108561105 0.8407492199793979 1.1064448286549948 1.0113090591110148 1.1037779318976613 1.231008334024748 1.1526617271941266 0.8175728367068918 1.2239005076850678 1.0 20.030978682160463 4.225796481171926 24.998314622120308 1.0686348644136296 0.928013142303854 0.19808159903318012 0.12101936582561677 349.69474642489786 684874.2755240081 0.03149885890633065 0.06874202373644328 16818.857120607358 -4.225796481171926 -0.14062172210977564 NSTFSEIFKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSTFSEIFKK 10 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 164.04 1.0069e-05 2636800000.0 2092860.0 2021220.0 2088610.0 1643610.0 933270.0 1961990.0 2300190.0 1675420.0 5041500.0 2167490.0 False True 2081592.274298607 2088495.0858467107 2382668.1334764403 1851690.857476872 1052116.4025753262 1826362.249327675 2188921.022120891 1800448.348010377 3799089.877638932 2029158.9325184496 1.0258399383803223 1.0292417475917557 1.174214643955582 0.9125410670413496 0.5184987660229813 0.9000587485086358 1.078733157389577 0.887287988711553 1.8722485541947018 1.0 20.95245043696997 1.2742815507892937 24.992866573741182 1.4361257606434275 0.9394633842190732 0.3755671609157347 0.2554692892856747 147.1145274660547 102931.61529458781 0.16382824632648543 0.05982045497318594 18.805355628524985 -1.2742815507892937 -0.4966623764243543 NSTGGTSVGWDS(ph)PPAS(ph)PLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 2 NSTGGTS(0.001)VGWDS(0.999)PPAS(1)PLQR 107.39 0.00059104 0.0 70968.0 79552.0 68348.0 76782.0 74080.0 75638.0 72779.0 65242.0 77045.0 66716.0 True False 70585.91617328607 82199.84022980045 77970.80430853413 86502.5933273642 83513.64889343937 70409.32309270023 69258.40172722093 70110.68933216314 58058.29210010737 62458.12776155872 1.130131797141857 1.3160791585621658 1.248369221155602 1.384969361515255 1.337114189721834 1.1273044136304589 1.1088773264485778 1.1225230701730122 0.9295554346705966 1.0 15.930601703477297 2.0344273791630005 1.0483198263934768 0.9914487447626471 1.2846730574035121 0.6789437877657929 0.07967656150213444 0.31467272060960155 0.6387886805463246 0.0633251818928058 0.03039808750602701 108.2498689263323 -2.0344273791630005 0.293224312640865 NSTGGTSVGWDS(ph)PPASPLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 NSTGGTSVGWDS(1)PPASPLQR 273.26 2.4786e-34 0.0 52215.0 51906.0 47904.0 50029.0 50719.0 58348.0 59042.0 51932.0 61332.0 58320.0 True False 51933.880241631865 53633.65983216042 54648.4668109677 56362.66627041104 57177.76401493461 54314.54009641805 56185.912897656985 55807.42954535273 46217.55040669464 54597.967669736 0.9512053737197831 0.9823380268765919 1.0009249271243423 1.0323216902751717 1.0472507760875613 0.9948088255769445 1.029084328514323 1.022152140953905 0.8465067909901951 1.0 15.736559629460823 4.583465827108766 2.399561914424698 1.0030202831235762 0.9475474121513126 0.052572021662522506 0.05333287137669226 1.0760762696730242 9.444086652004955 0.013177287256180335 0.10666222788845436 38323.55839423019 -4.583465827108766 -0.05547287097226361 NSTWSGESK ddPTM_BT-474_Trastuzumab_2h_R1 2 NSTWSGESK 9 0 P19338 P19338 NCL Nucleolin 0 ; 123.96 0.0012636 723480000.0 451590.0 427770.0 397250.0 395600.0 410240.0 498830.0 553890.0 499890.0 632750.0 464090.0 False True 449158.6896163652 442008.06585757475 453179.3470411011 445682.9194382181 462481.63231701666 464347.05621951446 527096.2246347218 537194.330189986 476817.24091560737 434471.37887256127 1.0338050133058638 1.0173467973991082 1.0430591497582336 1.0258050152687859 1.0644697321999461 1.0687632806204164 1.2131897525736193 1.2364320328395104 1.097465251112587 1.0 18.728901615990534 2.3826667647499344 5.072548199641956 1.1665527100857884 1.0382578757623064 0.3121105105010148 0.06405352718807703 0.18060529261951655 7.667668591197967 0.022211281514134762 0.018443270014675682 241.36081561347592 -2.3826667647499344 -0.128294834323482 NSVLSDPGLDS(ph)PRTS(ph)PVIMAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NSVLSDPGLDSPRTSPVIMAR 21 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 NSVLSDPGLDS(1)PRT(0.082)S(0.918)PVIMAR;NSVLSDPGLDS(1)PRT(0.106)S(0.894)PVIMAR 172.95 2.8068e-12 513810000.0 94474.0 86139.0 93451.0 102452.0 86938.0 107393.0 97199.0 86433.0 104009.0 90996.0 True False 93965.36248104807 89006.08454287499 106608.08850934677 115422.41269535992 98009.03897810246 99969.17468592977 92497.1130337619 92883.06935788077 78377.37559919621 85188.55737440489 1.1030279814232444 1.044812675388926 1.2514367163280244 1.3549051216829135 1.1504953481880362 1.1735047260697686 1.085792691936733 1.0903233042162974 0.9200458138377265 1.0 16.378372038546892 1.6701779642248054 1.349456656277298 0.965678983092754 1.1835931163435833 0.48887924085734413 0.08415412741891708 0.37617487850922465 1.3131541793791586 0.07573530630389305 0.028122822595881537 46.792684802676845 -1.6701779642248054 0.2179141332508293 NSVSNFLHSLER ddPTM_BT-474_Trastuzumab_2h_R1 1 NSVSNFLHSLER 12 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 143.81 6.2524e-05 341150000.0 150580.0 222450.0 232180.0 240210.0 205750.0 211760.0 214930.0 156370.0 246290.0 224130.0 False True 149769.29401101067 229854.11377613514 264868.92585526226 270620.5613707138 231951.04292420554 197121.52962942154 204533.0147876666 168039.12343077097 185595.1296169182 209825.83151265304 0.7137791039897735 1.0954519380149548 1.2623275406359582 1.2897390155434447 1.1054456033942528 0.9394531083630406 0.9747751900381851 0.8008505064384209 0.8845199291190529 1.0 17.67883277247188 2.6286986940808985 2.8472003088450473 0.8941661547331832 1.1145306078870452 0.2300316205157883 0.15493768054568535 0.36562933949460064 5.747903547642531 0.05717534154765245 0.05341298057676633 425.3032427989757 -2.6286986940808985 0.220364453153862 NSWGEPWGER ddPTM_BT-474_Trastuzumab_2h_R1 1 NSWGEPWGER 10 0 Q9UBR2 Q9UBR2 CTSZ Cathepsin Z 0 136.27 0.00028405 188300000.0 222480.0 245470.0 218070.0 225970.0 211900.0 276180.0 262920.0 236370.0 258980.0 237750.0 False True 221282.19239985163 253640.32056025145 248772.3605015806 254577.778830774 238884.20897029972 257088.32665779025 250201.55514806352 254009.12966253966 195157.84915420625 222576.5914519844 0.9941844780545487 1.1395642232888104 1.1176932797771204 1.1437760690377592 1.073267442060875 1.15505554730921 1.1241144161471202 1.1412212218971647 0.87681210266133 1.0 17.763942345769173 1.245687283534156 24.998464920111598 0.9384060335984566 1.115437202044975 0.631432001695392 0.05269553005702221 80.98378081073807 284076.99033041566 0.03410523075470029 0.011877365852191847 17.607077811732314 -1.245687283534156 0.17703116844651834 NSYNNSQAPS(ph)PGLGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 NSYNNSQAPSPGLGSK 16 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK 293.67 6.445799999999998e-29 731036000.0 1811580.0 1374300.0 1304250.0 1348500.0 1355910.0 1875290.0 1721230.0 1662090.0 2496130.0 1745920.0 True False 1801826.6545654598 1420042.744718107 1487877.0632557764 1519219.9617351783 1528577.101391784 1745655.6162578308 1637967.5291628689 1786123.595722006 1880992.207928366 1634493.8908426857 1.1023758881328725 0.8687966058936962 0.9102983324634398 0.9294742367938271 0.9351990300824587 1.0680098751288902 1.0021252072825995 1.092768596890347 1.1508101795098142 1.0 20.640412554158058 2.7375206696856136 24.529165161552637 1.0653472760554834 0.9415000772246346 0.39586033015820177 0.06975307708775712 68.57042293686928 1617345.6846605162 0.0214905389421017 0.02134838146290043 546.4125550636778 -2.7375206696856136 -0.12384719883084883 NT(ph)ADHDESPPRT(ph)PTGNAPSSESDIDISSPNVSHDESIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 NT(0.562)ADHDES(0.455)PPRT(0.503)PT(0.48)GNAPSSESDIDISSPNVSHDESIAK;NT(0.489)ADHDES(0.489)PPRT(0.494)PT(0.427)GNAPS(0.097)S(0.005)ESDIDISSPNVSHDESIAK 159.2 4.4232e-18 2373200000.0 435270.0 415830.0 394350.0 404920.0 453560.0 542120.0 509020.0 435930.0 560600.0 500900.0 True False 432926.5546830431 429670.6501754572 449871.052248353 456182.83048261754 511318.1775392598 504644.5204132124 484396.7579547677 468461.31020768674 422447.6416551397 468932.1331579346 0.9232179329822874 0.9162747011639437 0.9593521544765586 0.9728120515234064 1.0903884408515245 1.0761568353500954 1.0329783857904757 0.99899596782358 0.9008716012064392 1.0 18.83901961627915 3.736045152818045 2.3565728947739517 1.018877596272929 0.9243040162428204 0.35977046241483224 0.04965980491160964 0.33222923137242827 3.6110816612089294 0.014882326374211774 0.0291355391240524 5445.592667492287 -3.736045152818045 -0.09457358003010863 NT(ph)PSQHSHSIQHS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 7 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 NT(0.775)PS(0.225)QHSHS(0.009)IQHS(0.99)PER;NT(0.998)PS(0.002)QHSHS(0.001)IQHS(0.999)PER;NT(0.995)PS(0.005)QHSHSIQHS(1)PER;NT(1)PSQHSHSIQHS(1)PER;NT(0.991)PS(0.009)QHSHS(0.001)IQHS(0.999)PER;NT(0.974)PS(0.026)QHSHSIQHS(1)PER;NT(0.993)PS(0.007)QHSHSIQHS(1)PER 247.75 5.3398e-20 1290390000.0 624087.0 731625.0 669723.0 896201.0 917136.0 1029165.0 870071.0 159311.7 1117020.0 576453.0 True False 620726.9849345848 755976.6958483482 764014.1770633296 1009659.9547104402 1033927.8333090371 958021.2459438222 827982.3417360062 171200.3480224211 841745.3883011475 539663.2760137577 1.1502116458981742 1.4008303500516053 1.415723861565582 1.8709072853137794 1.9158758419623854 1.7752203800493538 1.5342573388575331 0.31723549782189864 1.559760364868127 1.0 19.041699989956584 1.9060895715924677 10.408523810257124 0.8915349542881749 1.6040206777017083 0.3862166103897241 0.35617659199596874 0.4680384642741911 49.609840875937856 0.14986641028572886 0.09542087134092771 80.55445645836271 -1.9060895715924677 0.7124857234135334 NTADHDES(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NTADHDESPPR 11 0 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 NTADHDES(1)PPR;NTADHDES(1)PPR 142.45 2.425e-05 308950000.0 361790.0 394040.0 377020.0 341240.0 358800.0 408950.0 417640.0 370060.0 419370.0 431630.0 True False 359842.1628386476 407155.38319779024 430101.13888341415 384440.9490118746 404491.05322578346 380680.24906475213 397437.1576602663 397675.75632660446 316021.8827700959 404083.0038629656 0.8905154619190042 1.0076033371991724 1.0643880954450435 0.9513910393079732 1.001009815703499 0.9420842881920618 0.9835532647026326 0.984143734145933 0.7820717024694921 1.0 18.62429214603173 1.3624361087857937 21.10196938439401 0.888326959089329 0.981023115231537 0.22105229097072499 0.06513150221249626 3.527008560049185 636.2218893733243 0.03986575472156034 0.014559428713573653 23.03754034448118 -1.3624361087857937 0.09269615614220794 NTADHDES(ph)PPRT(ph)PTGNAPS(ph)SESDIDISSPNVSHDESIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 3 NT(0.004)ADHDES(0.888)PPRT(0.615)PT(0.492)GNAPS(0.333)S(0.333)ES(0.333)DIDISSPNVSHDESIAK 100.75 5.5777e-05 455420000.0 67988.0 60017.0 50423.0 62026.0 57454.0 72341.0 68773.0 73578.0 107080.0 69899.0 True False 67621.96016217695 62014.629563957395 57522.1201154272 69878.48524033082 64770.42634346203 67340.23694239704 65446.18725162704 79068.76398151353 80691.56879848782 65437.98597645537 1.0333747158188422 0.9476854863209008 0.8790325566578974 1.0678581285413207 0.9897985913986789 1.0290695218924693 1.0001253289667964 1.208300695714604 1.2330998210660196 1.0 15.997840725835015 1.7704988437469116 8.711519505789104 1.164996081249137 0.9903974207335973 0.46182851686146253 0.07577121547289616 0.15612960643372106 35.147755445373804 0.03433571041413552 0.019084859806201858 58.95204075412914 -1.7704988437469116 -0.17459866051553963 NTADHDES(ph)PPRT(ph)PTGNAPSSESDIDISSPNVSHDESIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 NT(0.039)ADHDES(0.959)PPRT(0.956)PT(0.046)GNAPSSESDIDISSPNVSHDESIAK;NTADHDES(1)PPRT(0.985)PT(0.015)GNAPSSESDIDISSPNVSHDESIAK 239.06 5.6411e-50 2096290000.0 672178.0 608173.0 618703.0 520806.0 593053.0 758954.0 736563.0 669098.0 948337.0 687450.0 True False 668559.068333996 628415.6706566585 705811.0045371187 586739.986200558 668574.784249473 706489.2963655454 700932.6337460949 719029.4903707994 714632.0534147525 643576.3524444451 1.0388185734212592 0.9764430720143724 1.0967012722830674 0.9116866770694572 1.038842993080896 1.0977552137864341 1.0891211758850337 1.117240382807365 1.1104075696697402 1.0 19.295751791116718 2.8845587255079477 4.523383991208864 1.0923441939700291 1.0067562848603875 0.30463426985927466 0.0536547481628395 0.23917109854128535 7.83895949589703 0.01564835134756669 0.016777573031476492 766.5821907657563 -2.8845587255079477 -0.08558790910964165 NTADHDES(ph)PPRTPTGNAPS(ph)SESDIDISSPNVSHDESIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 NT(0.008)ADHDES(0.79)PPRT(0.296)PT(0.269)GNAPS(0.233)S(0.216)ES(0.187)DIDISSPNVSHDESIAK 90.331 0.00053704 408890000.0 53316.0 54774.0 48275.0 44909.0 42734.0 57272.0 57954.0 46474.0 70840.0 55149.0 True False 53028.95257996445 56597.11947841777 55071.70038617788 50594.474795376475 48175.92159573758 53312.92144378651 55150.54361422061 49942.12587019028 53382.431207367204 51629.34360456564 1.0271087888724395 1.0962200083716118 1.0666744246833273 0.9799558015473655 0.9331112548073791 1.0326089336350188 1.0682015257955668 0.9673205658530557 1.033955256457038 1.0 15.655903635900557 3.7508715531338797 23.744515024085466 1.0012224585055045 1.0666229839756016 0.3393455015426724 0.03901581837796895 435.1559477664804 839294.744519115 0.010302616856302554 0.018375599378267077 5634.709790928738 -3.7508715531338797 0.06540052547009712 NTADHDES(ph)PPRTPTGNAPSSESDIDISSPNVSHDESIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 NT(0.186)ADHDES(0.483)PPRT(0.146)PT(0.186)GNAPSSESDIDISSPNVSHDESIAK;NT(0.269)ADHDES(0.44)PPRT(0.118)PT(0.172)GNAPSSESDIDISSPNVSHDESIAK 182.58 8.5809e-24 1503810000.0 300190.0 362780.0 342750.0 345370.0 312200.0 415250.0 473800.0 395150.0 559760.0 468330.0 True False 298573.81039424456 374854.9129948593 391006.2207635936 389093.8065884158 351956.81944562314 386544.7448933567 450880.48390823294 424638.09953104245 421814.6483997161 438440.77844251407 0.68099005629649 0.8549727384539076 0.891810798604492 0.8874489457176065 0.8027465435489135 0.8816350209633576 1.0283726014489547 0.9685187154340359 0.9620789605796718 1.0 18.742022460967092 6.9114485811723645 0.23369534470981693 1.0151507948502945 6.70436939082306e-14 0.6855830714388742 0.054615526193856456 19.003277649425044 0.3901805007905545 0.08518919126951593 6.686745170713178 8155462.238214948 -6.9114485811723645 -1.0151507948502274 NTAEWLLSHTK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTAEWLLSHTK 11 0 P00491;G3V5M2;G3V2H3 P00491 PNP Purine nucleoside phosphorylase 0 151.78 3.3255e-05 324100000.0 648680.0 628310.0 530410.0 494620.0 441800.0 627310.0 618620.0 526700.0 865350.0 634290.0 False True 645187.5789551226 649222.9185285848 605087.1175936324 557238.8412854691 498060.6112462409 583945.5362289026 588694.9872421082 566005.0285284074 652096.087595924 593809.0691570098 1.086523619235138 1.0933193045539742 1.0189927184046434 0.9384141641294618 0.8387554807024142 0.9833893865209742 0.9913876662036136 0.9531768003003492 1.0981578447794007 1.0 19.179639601995007 4.060588528507421 3.411554661334543 0.9658026484772405 1.0898017824375401 0.3697270426833532 0.060734532541374675 0.23630277693832058 5.579277516551508 0.016066984961725757 0.03824157592454905 11497.105816231506 -4.060588528507421 0.1239991339602996 NTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTK 35 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 47.191 0.050303 59992000.0 72339.0 56320.0 49906.0 44284.0 42104.0 66117.0 67291.0 60346.0 93568.0 61501.0 False True 71949.53486161838 58194.57715384107 56932.33100927175 49890.34985945916 47465.69483004016 61546.48741267684 64035.87725341686 64849.32495077898 70509.42014696417 57575.95352634486 1.2496455630334742 1.0107444790682127 0.988821331169468 0.866513653770944 0.8244013676355602 1.068961669640698 1.112198293409351 1.126326547438004 1.2246331294313932 1.0 15.813178778513082 2.4880028327902153 21.531617273875334 1.1214095187196076 0.9789910786942524 0.21001807345868695 0.11679568527766615 124.2286874203797 245817.95218844176 0.040584776180335735 0.036138334108835685 307.61168793874873 -2.4880028327902153 -0.1424184400253552 NTCEHIYEFPQLSEDVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 NTCEHIYEFPQLSEDVIR 18 0 A6NIH7 A6NIH7 UNC119B Protein unc-119 homolog B 0 214.26 1.0149e-18 155240000.0 161070.0 152680.0 167090.0 155520.0 141110.0 163160.0 149480.0 156610.0 204700.0 162220.0 False True 160202.8170165592 157761.861502991 190614.81962768437 175208.81605417523 159079.5220755027 151881.13323732742 142249.0813309469 168297.0334494663 154254.42783947033 151866.98071647054 1.0548890631838617 1.0388160794315517 1.2551432755718932 1.1536992124791297 1.0474924919492385 1.0000931902431331 0.9366689234213469 1.1081871296544046 1.0157206465272202 1.0 17.212448704152546 3.111129286311021 4.911757066917136 1.0202619601593708 1.1281764219546733 0.38257336279923426 0.0676681588727963 0.24901520246870001 9.722519752144617 0.021151037666716277 0.02554484758513146 1291.6037174275598 -3.111129286311021 0.10791446179530251 NTDDDRPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 NTDDDRPPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 105.52 0.0028126 252130000.0 539590.0 528660.0 454800.0 468700.0 495250.0 540440.0 525540.0 520320.0 600770.0 508290.0 False True 536684.9073940844 546256.1285182812 518831.8868075346 528037.3719431061 558317.151923271 503080.6548589179 500117.6224422387 559148.9205314235 452718.2834055615 475850.49703103723 1.127843536452331 1.1479574612751782 1.0903254069180766 1.1096707374221046 1.1733037065354897 1.0572241870036432 1.0509973732561189 1.1750516685810106 0.9513876442920539 1.0 18.86014885244328 1.2298014205546368 24.999547681106563 0.9756937412451668 1.1160836668273544 0.6447075625069016 0.04182400361433635 126.60591850920682 361331.26616659475 0.037562221351635144 0.009963971005336027 16.97467314726834 -1.2298014205546368 0.14038992558218755 NTDDDRPPRR ddPTM_BT-474_Trastuzumab_2h_R1 4 NTDDDRPPRR 10 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;; 149.33 1.3235999999999997e-05 818836000.0 880380.0 1049777.0 969825.0 1030309.0 1007082.0 1077613.0 1039282.0 959534.0 1337581.0 1083849.0 False True 875640.1318994128 1084718.1928414037 1106367.930129985 1160746.0137600394 1135327.9232573258 1003120.149738147 989007.959217214 1031139.2994949264 1007952.0852171299 1014676.8288901872 0.8629744042318901 1.0690282481643194 1.0903648320619344 1.143956361977455 1.1189059323440962 0.9886104828424235 0.974702418600562 1.0162243486162439 0.9933725266197193 1.0 19.952588876441908 2.708365475731256 24.4310369628323 0.9956301998715235 1.0643910505889669 0.15544140905964587 0.07176550693075957 958.5619437451829 775576.263622029 0.023991422950867584 0.02262272154084224 510.934790645027 -2.708365475731256 0.06876085071744342 NTDEMVELR ddPTM_BT-474_Trastuzumab_2h_R1 5 NTDEMVELR 9 0 P61978;P61978-2;S4R457;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;; 190.03 8.7304e-05 11132100000.0 3394220.0 3653230.0 3557000.0 3361320.0 3367590.0 3746850.0 3844380.0 3493020.0 4339370.0 3642500.0 False True 3375945.896653296 3774825.55212583 4057794.6820017546 3786862.767356092 3796432.625230261 3487839.07863618 3658412.65244224 3753686.889596159 3269990.4080789583 3410032.5314988587 0.9900040147621172 1.1069764048458004 1.189957762724972 1.1105063463108957 1.113312729471693 1.022816951574102 1.0728380502675754 1.1007774427143806 0.9589323204027189 1.0 21.701354071860486 1.2420417747410397 24.99997082390852 0.9794661324086402 1.0914238374987582 0.4113635049985235 0.05202227713754322 80.17428903324219 575807.1672165352 0.039129848981687414 0.013003891545586226 17.45990091448661 -1.2420417747410397 0.11195770509011793 NTDKNGEELHGGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 NTDKNGEELHGGKR 14 2 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;; 182.02 9.4358e-07 915625000.0 445178.0 420980.0 377221.0 402544.0 415140.0 514188.0 529579.0 436589.0 786070.0 508182.0 False True 442781.2111119254 434992.0648122165 430330.4379362907 453506.0291262337 468005.61827244103 478643.39382835745 503961.24058176065 469169.4881340208 592353.5812983513 475749.3896835007 0.9307026361221233 0.9143302634641347 0.9045317708606507 0.9532456351188077 0.9837230029528544 1.0060830433156878 1.0592998152178994 0.9861693957109283 1.2450958301647497 1.0 18.859842280171733 2.666013030630701 0.7832779820532223 1.081630526124533 0.9125027668911783 0.5044148464988306 0.06584922370084546 0.5478592450620242 0.711688917217753 0.04397852835641136 0.03923290546313094 463.4608252693094 -2.666013030630701 -0.16912775923335466 NTDLYHCLLEHLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NTDLYHCLLEHLQR 14 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 0 ; 179.14 1.0993e-06 638180000.0 615030.0 597000.0 595920.0 597790.0 540010.0 609850.0 589180.0 364790.0 766700.0 573450.0 False True 611718.7468162561 616870.7841058794 679820.3561705055 673470.1527072104 608777.0726099645 567692.504932484 560679.1125138308 392012.48216608627 577757.0582536482 536851.9300447544 1.1394552437676073 1.1490520003429143 1.2663088612046762 1.2544802673077227 1.1339757548402856 1.0574470783501861 1.044383155085407 0.7302059659791227 1.0761944326166133 1.0 19.03416470557705 2.4207167727221477 1.6854379466642047 0.9104872372649234 1.1977611525919203 0.547138981896997 0.09673941669269549 0.2400632763222527 1.3857996504562862 0.04580783928028149 0.033965047551748714 263.461264987519 -2.4207167727221477 0.28727391532699686 NTDVAQS(ph)PEAPKQEAPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTDVAQSPEAPKQEAPAK 18 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 NTDVAQS(1)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK 242.09 3.0578e-24 998100000.0 1458480.0 936400.0 892670.0 912700.0 836950.0 1615450.0 1543850.0 1278140.0 2149480.0 1398660.0 True False 1450627.705732362 967567.5079342466 1018350.1767732658 1028247.7264187617 943530.6215086947 1503777.74386026 1469168.0774202738 1373521.297063411 1619769.4555563466 1309396.3213469307 1.1078599214637717 0.7389416727083389 0.7777249410061915 0.7852838057166976 0.7205844450044868 1.1484511750524666 1.1220194019706664 1.0489729310148947 1.2370352880556024 1.0 20.320470400222877 2.7317203560848324 24.968521250163487 1.1097165559641546 0.8162852637095679 0.5983352655860354 0.11670208645812646 353.5558769020604 1290556.7745998355 0.03620469384926086 0.03484292469569752 539.1633413354355 -2.7317203560848324 -0.29343129225458675 NTEDLTEEWLR ddPTM_BT-474_Trastuzumab_2h_R1 1 NTEDLTEEWLR 11 0 P60983;G3V4P8 P60983 GMFB Glia maturation factor beta 0 221.32 1.9775e-11 315790000.0 163580.0 152980.0 155540.0 151250.0 158170.0 176820.0 164690.0 171140.0 190790.0 176430.0 False True 162699.30345544658 158071.84682163698 177438.68002208424 170398.23449198806 178312.01195296037 164596.84958950843 156723.31552310457 183911.33583131112 143772.36095501963 165170.0863506777 0.9850409783646578 0.9570246665974961 1.0742785448774224 1.0316531174428905 1.0795660152067768 0.9965294153812319 0.9488601658193752 1.1134663660636666 0.8704503589697961 1.0 17.333592901016974 1.2290346007639747 24.999998801547086 0.9352252363158998 1.0247437339412573 0.26439650173843954 0.05872542561219214 288.89301970176115 758141.6060650845 0.0519747472864492 0.013679397274387113 16.94472795756293 -1.2290346007639747 0.08951849762535746 NTEESSS(ph)PVRK ddPTM_BT-474_Trastuzumab_2h_R1 5 NTEESSSPVRK 11 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 NTEESS(0.015)S(0.985)PVRK;NTEESS(0.003)S(0.997)PVRK;NTEESS(0.004)S(0.996)PVRK;NTEESS(0.004)S(0.995)PVRK;NTEESS(0.007)S(0.993)PVRK 191.57 1.0851e-06 11429570000.0 4693350.0 4076450.0 3973690.0 3779120.0 4141190.0 5018120.0 5160930.0 4642730.0 6487260.0 4840840.0 True False 4668081.52508021 4212132.173983943 4533151.012067346 4257556.204518102 4668545.999743825 4671229.1757838745 4911276.099232831 4989194.0879052505 4888561.69783039 4531893.44674837 1.0300510327376637 0.9294420143540982 1.0002774922521354 0.9394652046757399 1.0301535229371959 1.0307455880577858 1.0837139392049624 1.1009071917798494 1.0787018175235186 1.0 22.11168251043519 2.7737317333342655 1.751192234933964 1.0758189334367338 0.9742667945055534 0.49160699830259136 0.038917579790951624 0.2429647243778219 1.4824375016834888 0.013875937272993513 0.01391510247750003 593.9251736491022 -2.7737317333342655 -0.10155213893118042 NTELAVFHDETEIQNQTDLLSLSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTELAVFHDETEIQNQTDLLSLSGK 25 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 188.29 1.2247e-17 136575000.0 65841.0 59451.0 62930.0 59500.0 67511.0 74515.0 62078.0 75963.0 93744.0 74317.0 False True 65486.51937162286 61429.790596111576 71789.99700263437 67032.69389932753 76108.12568095294 69363.95343944248 59075.049979010706 81631.7447922982 70642.04730524332 69574.02543401523 0.9412495390787902 0.8829414456458649 1.0318505585208777 0.9634729840794115 1.093915799843071 0.9969805973815331 0.8490963345945555 1.1733077723053216 1.0153508707389802 1.0 16.086261174534854 4.232624261295951 24.949539671764803 1.0211069448786168 0.9120954828729646 0.20781443428277913 0.08015710306321822 181.49276852623385 762797.7942711771 0.02008499897695973 0.04525302948019252 17085.365003663304 -4.232624261295951 -0.10901146200565215 NTETSKS(ph)PEKDVPMVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NTETSKSPEKDVPMVEK 17 2 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3 O14617-5 AP3D1 AP-3 complex subunit delta-1 1 NT(0.066)ET(0.249)S(0.249)KS(0.435)PEKDVPMVEK;NTET(0.02)S(0.059)KS(0.922)PEKDVPMVEK;NTET(0.006)S(0.023)KS(0.971)PEKDVPMVEK 193.77 5.8357e-11 2928890000.0 5191590.0 2531310.0 2165130.0 1992280.0 2289050.0 4462420.0 4071080.0 3874780.0 8065150.0 3794540.0 True False 5163639.056279868 2615563.123140789 2469961.484352674 2244502.44372693 2580546.9492376815 4153943.4088067743 3874146.3073641425 4163935.7593341577 6077601.849973143 3552369.2085308656 1.4535761215021246 0.7362869593790038 0.6952997673837407 0.6318325354067509 0.7264298268999198 1.169344503615011 1.0905809841107008 1.1721573729821329 1.710858723630989 1.0 21.760350102486104 2.3238816136761953 1.5359824293048638 1.2908457353514193 0.8290470472666625 0.3044892424676048 0.28101530651656537 0.4682366263999347 2.216121328856212 0.1487567461875587 0.09745178487143864 210.80534276557384 -2.3238816136761953 -0.4617986880847569 NTFLWTEFTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NTFLWTEFTDR 11 0 Q86T03-2;Q86T03;H0YJ90 Q86T03-2 TMEM55B Type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase 0 86.31299999999997 0.033881 12744000.0 30192.0 30563.0 27505.0 30211.0 29942.0 33944.0 25373.0 25411.0 32228.0 30051.0 False True 30029.449626646565 31580.27097927634 31377.464922254243 34035.709502396385 33754.936219861826 31597.53117558123 24145.61105572731 27307.29785444345 24285.841233074963 28133.11945204452 1.0674056134384426 1.1225300142455872 1.1153212133386063 1.209809298269016 1.1998291294145396 1.1231435329964783 0.8582628420174206 0.9706459285821909 0.8632473648886468 1.0 14.779981909751951 2.2949217694648008 7.2646888135670356 0.9239918559230834 1.1447569250035121 0.7845678023920961 0.05560349233059536 0.09591571662544132 10.199177227710885 0.01940201681340511 0.016109267358775055 197.20674707453927 -2.2949217694648008 0.2207650690804287 NTFTAWS(ph)DEES(ph)DYEIDDRDVNK ddPTM_BT-474_Trastuzumab_2h_R1 4 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 NT(0.001)FT(0.017)AWS(0.982)DEES(0.999)DY(0.001)EIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK 220.67 5.675199999999998e-26 1608140000.0 2154870.0 1519530.0 1280020.0 1330270.0 1441060.0 2167310.0 1825990.0 2002000.0 3196270.0 2047720.0 True False 2143268.4193485663 1570106.6374747192 1460235.6898667114 1498682.045604343 1624570.4491681939 2017488.96099897 1737659.8877408048 2151399.405950015 2408592.086323713 1917032.7564587067 1.1180134570615161 0.8190296343058547 0.761716608621844 0.7817717462339173 0.8474401095624614 1.0524019238595765 0.9064320272496263 1.122254900810484 1.2564167608554866 1.0 20.87044355796132 2.0823905138100405 1.253441331941562 1.1387985733364168 0.8600765380873686 0.4120021640250614 0.12253633836419194 0.4209581773462725 1.2388406394977571 0.0859917190188861 0.04280905962280306 120.89003792045597 -2.0823905138100405 -0.27872203524904815 NTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_BT-474_Trastuzumab_2h_R1 6 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 NTFT(0.001)AWS(0.999)DEESDYEIDDRDVNK;NTFTAWS(1)DEESDYEIDDRDVNK;NT(0.185)FT(0.152)AWS(0.538)DEES(0.125)DYEIDDRDVNK;NTFT(0.001)AWS(0.998)DEESDYEIDDRDVNK;NTFTAWS(1)DEESDYEIDDRDVNK;NTFTAWS(1)DEESDYEIDDRDVNK 331.54 5.454799999999998e-81 5667070000.0 1187168.0 1029168.0 889384.0 886578.0 1005854.0 1264397.0 1233518.0 1166351.0 1619053.0 1290032.0 True False 1180776.419394764 1063423.234734806 1014601.5365356901 998818.6838971091 1133943.5447362533 1176992.2114603866 1173848.0218436383 1253390.0342303729 1220059.0823486953 1207701.0533080406 0.9777058785868185 0.8805351554691121 0.8401098382390018 0.8270413287801835 0.9389273459936492 0.9745724806950042 0.971969030438721 1.0378313662948166 1.0102326887989412 1.0 20.203831952559316 2.74292522716164 1.843299852673516 1.0094579999383522 0.8793839790596862 0.6370785532718708 0.04159396879604859 0.21943893633602765 1.4783268100065592 0.016515568868195486 0.01625388986899574 553.2548466729935 -2.74292522716164 -0.13007402087866593 NTGVSPASRPSPGTPTS(ph)PSNLTSGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 NTGVSPASRPSPGTPT(0.032)S(0.966)PS(0.001)NLTSGLK 171.19 3.765e-12 820890000.0 269230.0 223310.0 234230.0 209570.0 235070.0 274430.0 274920.0 279740.0 386300.0 278690.0 True False 267780.49559426506 230742.7383562543 267207.5480363429 236101.54051230362 265004.7711309505 255459.30003873326 261621.06930361193 300615.6192909374 291101.5411547991 260903.76560148684 1.0263573428191985 0.8843978845008258 1.0241613317474485 0.9049372666891019 1.0157184604829645 0.9791322844643429 1.0027493037537094 1.1522088176761227 1.115742965547831 1.0 17.993158241035207 1.9053435707050868 5.184782480333711 1.1025150004746433 0.9711661104987329 0.4475551687859891 0.05748782573295578 0.16765516537378025 6.942662337942883 0.02413076614494603 0.01435855363630489 80.41620438366732 -1.9053435707050868 -0.13134888997591043 NTHATTHNAYDLEVIDIFK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTHATTHNAYDLEVIDIFK 19 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 125.64 1.5577e-05 304370000.0 258140.0 251360.0 219440.0 231580.0 258060.0 328390.0 311890.0 135010.0 388830.0 257750.0 False True 256750.20292205046 259726.36564967138 250335.24459332714 260898.00425556736 290922.4113585444 305689.1722469102 296802.68916449737 145085.1317668888 293008.0565550624 241300.17432912302 1.0640282529255627 1.0763621135864403 1.0374432811303347 1.0812176368331743 1.2056452597574123 1.2668419038519358 1.2300144000711384 0.6012640984212425 1.2142886235772548 1.0 17.88046943227672 NTHCSSLPHYQK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTHCSSLPHYQK 12 0 P43243;A0A0R4J2E8;P43243-2;B3KM87;A8MXP9;Q68E03 P43243;A8MXP9 MATR3;DKFZp686L22104 Matrin-3 0 ; 102.66 0.0013474 475160000.0 466020.0 674810.0 564110.0 564450.0 549720.0 535980.0 479830.0 388370.0 503970.0 577780.0 False True 463511.0000996893 697270.6429187405 643531.7846679817 635909.3121256381 619723.5835542866 498928.9641612079 456618.7897713956 417352.1415029003 379773.34635201714 540905.5857376554 0.8569166455687088 1.2890801302557147 1.1897303367469771 1.1756382793836788 1.1457148897975307 0.9223956589037582 0.8441746615514898 0.7715803876081994 0.7021065346073372 1.0 19.045017270198525 2.565449139731394 2.332583967107569 0.8058023036836915 1.1487292395068367 0.562168139641133 0.125944476943392 0.19570148144903088 2.112844932031604 0.04532132377321821 0.04026366913725916 367.6623338855797 -2.565449139731394 0.34292693582314515 NTIQWLENELNR ddPTM_BT-474_Trastuzumab_2h_R1 3 NTIQWLENELNR 12 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 166.11 0.00012284 288300000.0 189587.0 187085.0 192674.0 182650.0 193054.0 221747.0 214683.0 210158.0 240016.0 237742.0 False True 188566.28465709594 193312.01112972928 219800.82444756982 205773.47127247354 217638.28257929336 206418.1518262907 204297.9631212985 225841.05712070054 180867.27284962527 222569.1020188334 0.847225796153591 0.8685482817528354 0.987562165879479 0.9245374555856426 0.9778458941748222 0.9274339966956598 0.9179080171874494 1.0147008505322104 0.8126342390253279 1.0 17.763893800008873 4.352023860779959 6.175984930529499 0.947544081342653 0.8529863611364978 0.2921634119928499 0.05466409547049116 0.22062158163417503 10.859699806194486 0.012361055036945253 0.034720467628443975 22491.781756104952 -4.352023860779959 -0.09455772020615516 NTKDEFEER ddPTM_BT-474_Trastuzumab_2h_R1 1 NTKDEFEER 9 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 106.62 0.0026507 389420000.0 645560.0 713160.0 677780.0 675450.0 717190.0 798520.0 779740.0 704670.0 895000.0 805130.0 False True 642084.3766884588 736897.0994856757 773205.5326306296 760961.9007445509 808519.895381829 743320.1919138924 742020.9973039383 757256.0536417571 674439.2423855682 753745.9140935267 0.8518578537976491 0.977646559281036 1.0258172126352494 1.0095735001889892 1.0726690258137914 0.9861681211338008 0.9844444705167138 1.0046569268006604 0.894783281441287 1.0 19.523718750908262 4.724339134742003 3.6127921512067473 0.9998426063528164 0.8372369192273389 0.5154762961003696 0.04194358911144852 0.202588822216484 4.8523651814461 0.010075292014744797 0.08720882964552203 53007.72125104314 -4.724339134742003 -0.16260568712547752 NTLETSSLNFKVT(ph)PDIEESLLEPENEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTLETSSLNFKVTPDIEESLLEPENEK 27 1 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 1 NTLETS(0.001)S(0.001)LNFKVT(0.998)PDIEESLLEPENEK 134.03 4.5912e-05 45773000.0 70880.0 40575.0 36152.0 36575.0 44537.0 63397.0 57089.0 59607.0 97094.0 57893.0 True False 70498.38995550828 41925.514346894524 41241.8873611829 41205.391249880784 50208.522958519345 59014.51461048559 54327.386968841536 64055.17701821298 73166.48469294346 54198.219175309045 1.30075103994607 0.7735588915067976 0.7609454330553238 0.760272050943191 0.9263869500234931 1.0888644591734242 1.0023832479276613 1.1818686664043465 1.3499794975971413 1.0 15.725957828376593 2.350497493508177 1.3423065341782225 1.1805838356916722 0.88146361244908 0.28919101324244467 0.17342440408007206 0.5006440057512432 1.7973276388335298 0.09803383210641566 0.06355112224690636 224.12871103565735 -2.350497493508177 -0.29912022324259224 NTLQLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 NTLQLHR 7 0 P61313;E7ERA2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 127.02 0.0038953 836330000.0 794860.0 1013790.0 966270.0 921300.0 753680.0 794210.0 761000.0 638910.0 1211450.0 869430.0 False True 790580.5620772488 1047533.387301004 1102312.4170305973 1037936.485536982 849656.6805886524 739308.132069242 724187.5226976895 686588.7085192417 912904.3800983212 813942.2330435275 0.9712981216382842 1.2869873865421906 1.3542882679877462 1.2751967441913976 1.0438783565899756 0.9083054079953432 0.8897284024564945 0.8435349348465676 1.121583747638638 1.0 19.634566881878015 3.0628433024241883 3.6359382111676255 0.9317645016376863 1.2352171319037226 0.5305509402781039 0.11826189368562079 0.16399486749553804 4.41318878758335 0.036282192795837075 0.043382192646479044 1155.6951811538556 -3.0628433024241883 0.3034526302660363 NTPENLHEMAK ddPTM_BT-474_Trastuzumab_2h_R1 4 NTPENLHEMAK 11 0 Q53H82 Q53H82 LACTB2 Beta-lactamase-like protein 2 0 ;;; 108.56 0.0020461 710820000.0 1118730.0 1023950.0 954900.0 912390.0 933230.0 1346920.0 1170920.0 1098530.0 1667330.0 1240820.0 False True 1112706.8819825866 1058031.5567591547 1089341.6198604093 1027898.480450545 1052071.3088124245 1253810.5907086337 1114278.1262512195 1180507.8868223114 1256438.8625773506 1161629.8052805527 0.9578842389584258 0.9108164683357299 0.9377700321638316 0.8848761247153869 0.905685532542213 1.0793547006189443 0.9592368594417247 1.0162513749698419 1.0816172733049838 1.0 20.147718945142024 2.7550494696037897 24.771006850426392 1.0216035757804731 0.9180310935463526 0.6645236119095033 0.038214424573771485 450.0836134015426 676154.2575808939 0.011485849936770164 0.012146892978975555 568.917731418279 -2.7550494696037897 -0.10357248223412052 NTPETDESLIDPNILSLNILSSGYIHPAQDDR ddPTM_BT-474_Trastuzumab_2h_R1 3 NTPETDESLIDPNILSLNILSSGYIHPAQDDR 32 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ;; 197.83 9.3699e-27 296268000.0 229246.0 261324.0 236823.0 244792.0 270764.0 297596.0 277643.0 265950.0 324015.0 285322.0 False True 228011.76500762498 270022.011366306 270165.6198975828 275782.64210091083 305244.1904560369 277023.88898563135 264212.3473907419 285796.53946673655 244165.8448285585 267112.5056835462 0.8536169597306512 1.0108924352879485 1.011430068413396 1.0324587439108386 1.1427551460943806 1.0371056505824081 0.9891425589177013 1.0699481805817272 0.9140936483064814 1.0 18.02708799614284 4.868706135382115 2.115903391477769 1.032467321167833 0.7578715631106635 0.4508457213746727 0.05570194224962474 0.9586592865345679 3.516920623333149 0.013826688878123057 0.5647516902693224 73910.49916917333 -4.868706135382115 -0.2745957580571695 NTPS(ph)QHSHSIQHS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 NT(0.047)PS(0.822)QHS(0.123)HS(0.008)IQHS(1)PER 85.913 0.0033049 391910000.0 86761.0 93710.0 65521.0 82956.0 63211.0 52830.0 49784.0 11455.0 63472.0 36572.0 True False 86293.88841605333 96829.08070110872 74745.7872812587 93458.22109432978 71260.54616904972 49177.98644844326 47375.7577266515 12309.830267311385 47830.17608122549 34237.94364913553 2.520416801323644 2.8281219717339403 2.1831272358889446 2.729668056355058 2.0813325385226213 1.4363592320967253 1.3837208861650687 0.35953766363600503 1.396993247356815 1.0 15.063308434784911 2.6510021088695073 1.3740686709048908 0.8772514893640384 2.5802058153940926 0.8335715799624768 0.31198583144923475 0.14705890811605737 0.5641585622847725 0.13979091837397137 0.12255010552098926 447.7154782109563 -2.6510021088695073 1.7029543260300541 up NTPSEPIHCIVWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTPSEPIHCIVWAK 14 0 Q9UBT2;Q9UBT2-2;K7EPL2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 0 111.74 0.00063403 973770000.0 606020.0 614080.0 475510.0 576040.0 558870.0 635550.0 591880.0 556100.0 715820.0 565640.0 False True 602757.2556551516 634519.281580801 542457.6747929874 648966.6049372879 630038.7818179867 591615.9244237755 563248.5031988281 597599.0058185823 539415.7524965781 529540.3709312316 1.1382649723101625 1.1982453395667587 1.024393426017812 1.225528100522416 1.1897842287454345 1.117225346546062 1.0636554531400852 1.1285239778180935 1.018648968251429 1.0 19.014381150575243 1.3670829715791568 0.8122357163120316 0.9973372110003988 1.151208612127743 0.44963355650365233 0.056796799701512135 0.5262141758809151 0.7509684864108026 0.05222159577788294 0.02059065641764477 23.28536079944211 -1.3670829715791568 0.1538714011273441 NTPSQHSHSIQHS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 13 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHS(0.062)IQHS(0.938)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHS(0.035)HS(0.02)IQHS(0.945)PER;NTPSQHS(0.004)HS(0.006)IQHS(0.99)PER;NTPSQHSHSIQHS(1)PER 283.22 2.0726e-35 29302542000.0 2332951.0 4271597.4 4789101.7 5752870.3 6135347.8 5608776.1 5412986.9 670734.3 5688337.0 3171645.1 True False 2320390.6510312245 4413774.937223847 5463365.591741804 6481183.090124914 6916647.975274521 5221054.609845772 5151140.044028971 720787.8993857639 4286522.566160669 2969227.9943360193 0.7814794470001998 1.4865059017506868 1.8399953126413673 2.1827839096519903 2.329443204923449 1.7583879108661402 1.7348415324976998 0.24275262821201676 1.4436488455374488 1.0 21.501656445292454 1.766089154859954 24.999999999999996 0.8290872164703126 1.76682463263472 0.38571587245004935 0.47918461520417366 18.00012724546506 16356.727754605896 0.2284268883743264 0.12668823045574953 58.35648900603249 -1.766089154859954 0.9377374161644073 NTS(ph)ASDEDER ddPTM_BT-474_Trastuzumab_2h_R1 2 NTSASDEDER 10 0 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-2;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 NT(0.08)S(0.46)AS(0.46)DEDER;NT(0.031)S(0.939)AS(0.031)DEDER 120.84 0.00055692 111327000.0 110515.0 139435.0 125105.0 130047.0 125135.0 109128.0 119798.0 116266.0 132910.0 124045.0 True False 109919.99951937092 144076.00968476266 142718.69656784646 146510.93686598085 141070.20051674588 101584.23821968028 114002.9130671982 124942.35930678547 100156.11140275527 116128.34189973243 0.9465389561342232 1.2406619032687198 1.228973859723862 1.2616294564205641 1.2147783926730717 0.8747583626690388 0.9816975873609788 1.0758989344277665 0.8624605308601762 1.0 16.825360589002088 2.7512474352763725 24.864157174714464 0.974818886377783 1.1893896186280084 0.5363659924188787 0.10127709062815181 582.2978322746251 1141210.6315353415 0.031185218308078817 0.0328754893485944 563.9588746800283 -2.7512474352763725 0.21457073225022538 NTSHETAANHK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTSHETAANHK 11 0 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 0 117.79 0.00046672 12136000.0 13765.0 24513.0 18792.0 24857.0 21999.0 15850.0 20599.0 11993.0 17776.0 14890.0 False True 13690.890769435277 25328.900386578578 21437.75025700788 28003.89365135438 24800.442251711313 14754.326806886726 19602.547674178317 12887.978559220031 13395.342986196498 13939.70745202964 0.982150509008126 1.8170324215011169 1.537890973019417 2.008929796247408 1.7791221470792298 1.0584387697991808 1.4062380965767083 0.924551580696446 0.9609486448904004 1.0 13.766912663715985 2.732116912747554 24.766217697486756 1.0817370466432432 1.6521794899387587 0.49396093627534643 0.28006860762306385 380.39805307365367 1462046.578316972 0.08907678618066543 0.08585441998741625 539.6558791615676 -2.732116912747554 0.5704424432955155 NTSLPPLWS(ph)PEAER ddPTM_BT-474_Trastuzumab_2h_R1 6 NTSLPPLWSPEAER 14 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER 231.37 5.924899999999998e-13 773740000.0 864316.0 719233.0 536827.0 636117.0 549829.0 731636.0 586949.0 572236.0 933634.0 763254.0 True False 859662.6186905344 743172.2356194697 612407.5754160696 716649.3469774553 619846.4640581927 681059.7254058917 558556.0345070775 614939.1560755296 703552.4107546458 714542.4762653756 1.2030951934217304 1.0400672602470469 0.8570625200854065 1.0029485590878955 0.8674732218830143 0.9531409930526668 0.7816974540497913 0.8606054594396791 0.9846194370862731 1.0 19.446660249895007 4.555551540195714 2.534370516816145 0.9020514480602325 1.2178482665974106 0.6158227869202108 0.07072180478611817 0.21607993207514953 2.2446562646033894 0.017485655401871067 0.12170124526023296 35937.804366075194 -4.555551540195714 0.3157968185371781 NTSSNSSPLNLKGS(ph)SEQLHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 NTSSNSSPLNLKGSSEQLHGR 21 1 Q9P219;Q9P219-2;A0A0A0MR69;Q9P219-3 Q9P219 CCDC88C Protein Daple 1 NTSSNSSPLNLKGS(0.784)S(0.216)EQLHGR 107.47 0.00020683 144820000.0 64711.0 70040.0 60407.0 74920.0 67203.0 79558.0 88120.0 82732.0 105090.0 68421.0 True False 64362.603166068024 72371.23905992597 68911.78053294346 84404.86431827926 75760.90370661196 74058.3427193876 83857.2989489099 88905.88194458367 79191.97763385403 64054.31320183474 1.0048129462142832 1.1298417771163145 1.0758335713600249 1.3177077404970383 1.1827603781792153 1.1561804196702605 1.3091592861932042 1.3879765077558759 1.236325450626886 1.0 15.967008099614997 4.315159016832519 0.8469414450095708 1.258703525275643 0.9613842382968462 0.25111474771528874 0.1091562405261982 1.5877892792216863 1.3370357171664868 0.03967582934441659 0.39237739716569975 20661.36532782095 -4.315159016832519 -0.29731928697879695 NTVDLVTTCHIHS(ph)SSDDEIDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 NTVDLVTTCHIHSSSDDEIDFK 22 0 Q5H9R7-2;Q5H9R7;Q5H9R7-5;E9PQP7;H0YDW1 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 NT(0.002)VDLVT(0.001)T(0.009)CHIHS(0.393)S(0.297)S(0.297)DDEIDFK 81.96700000000001 0.0080555 8954100.0 10643.0 11904.0 13758.0 10951.0 14628.0 18809.0 17169.0 5587.7 22847.0 12998.0 True False 10585.699270548459 12300.217443880038 15695.006813320259 12337.395477168671 16490.789093051197 17508.778101623477 16338.469878050766 6004.682547765681 17216.66298411518 12168.45651185234 0.8699294984731842 1.0108280727222354 1.2898108152034715 1.0138833520218262 1.3552079573106754 1.438865979803564 1.3426904112396458 0.4934629582574413 1.4148600496164634 1.0 13.570858562891424 NTVDLVTTCHIHSSS(ph)DDEIDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NTVDLVTTCHIHSSSDDEIDFK 22 0 Q5H9R7-2;Q5H9R7;Q5H9R7-5;E9PQP7;H0YDW1 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 NTVDLVTTCHIHS(0.001)S(0.044)S(0.955)DDEIDFK;NTVDLVTTCHIHS(0.005)S(0.071)S(0.924)DDEIDFK 313.77 1.7978999999999992e-67 834080000.0 623630.0 543090.0 646200.0 544640.0 599920.0 959620.0 779360.0 248950.0 1081610.0 724940.0 True False 620272.4453718066 561166.4223451624 737179.3431289099 613591.3681568034 676316.2559955746 893283.7281024997 741659.3793556793 267527.9131424856 815061.7083314575 678673.7085476404 0.9139479510694288 0.8268574651964297 1.086205836242679 0.9041036368859596 0.9965263829696444 1.316219733948622 1.0928069999099097 0.39419224551219834 1.200962551025716 1.0 19.372358599418472 NTVELLTDR ddPTM_BT-474_Trastuzumab_2h_R1 2 NTVELLTDR 9 0 Q9P2M7 Q9P2M7 CGN Cingulin 0 ; 66.962 0.062246 8043700000.0 1101020.0 3965790.0 3853940.0 5567400.0 4416600.0 2262190.0 2223400.0 1541760.0 446384.0 1986030.0 False True 1095092.2306548227 4097788.9227793175 4396541.252953009 6272232.269161615 4979027.830760866 2105810.1299224626 2115845.647787178 1656813.9600986463 336378.64443915006 1859279.8650741715 0.5889873016029982 2.2039656319388183 2.3646473753307813 3.373473992260654 2.6779334968822677 1.1325944896619726 1.1379920191319726 0.8911052021921142 0.18091877976946255 1.0 20.826312515248834 2.6133210762356147 4.394855807456377 0.8489144807326175 2.3053773985927575 0.49672444869786014 0.6938864864401677 0.2056835848666349 6.432666873488597 0.24346555724343802 0.22783652977041471 410.50748120686546 -2.6133210762356147 1.45646291786014 NTVGNVPLEWYDDFPHVGYDLDGR ddPTM_BT-474_Trastuzumab_2h_R1 3 NTVGNVPLEWYDDFPHVGYDLDGR 24 0 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ;; 181.37 3.3188e-17 450880000.0 392183.0 488160.0 466392.0 420342.0 462431.0 469832.0 414986.0 433455.0 407127.0 478551.0 False True 390071.53030362766 504408.1105010488 532055.9396480637 473557.2541013639 521318.84680672426 437353.619705565 394911.5417795317 465801.6131398913 306796.0060723012 448009.4654718765 0.8706769842301784 1.125887172874281 1.1875997733388586 1.0570251090623244 1.1636335546116932 0.9762151325193811 0.8814803530179476 1.0397137762463897 0.6847980449456823 1.0 18.773169688070308 2.531098634250304 5.456767850895262 0.91917823279836 1.0874881803348613 0.3308928799022275 0.11947095976623512 0.25361906375496024 16.687100727268362 0.03851144140458538 0.03555349937891625 339.702414920869 -2.531098634250304 0.1683099475365013 NVADHKK ddPTM_BT-474_Trastuzumab_2h_R1 3 NVADHKK 7 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 0 ;; 101.99 0.0056487 960410000.0 2597710.0 2561670.0 2358860.0 2432020.0 2323630.0 1796630.0 2479690.0 2321940.0 3369650.0 2631710.0 False True 2583724.217992715 2646933.637387787 2690966.9844213314 2739913.4826393733 2619530.5072659655 1672433.1969121075 2359737.921364304 2495214.953372415 2539244.908496682 2463752.014679715 1.0486949184001362 1.0743506739382152 1.0922231492405918 1.1120897989384533 1.063228154318324 0.6788155573074273 0.9577822391638176 1.0127703350439636 1.0306414336212246 1.0 21.232425620325962 2.9676453830424854 24.99825902095716 0.9375335803810158 1.082748067103996 0.36642456760392195 0.09367900851918208 742.9874707508479 574057.2087194021 0.02985327176879242 0.0316900129250879 928.2081621432394 -2.9676453830424854 0.1452144867229802 NVAEALGHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 NVAEALGHSPK 11 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 NVAEALGHS(1)PK;NVAEALGHS(1)PK 135.47 7.694100000000001e-05 1290890000.0 1758090.0 1263190.0 1112660.0 948280.0 1056860.0 1524430.0 1416410.0 1293980.0 2038580.0 1413540.0 True False 1748624.6387821627 1305234.515535519 1269312.8565859087 1068332.1507706624 1191444.8565000058 1419049.742222229 1347892.8370883504 1390543.3582973005 1536199.2745724835 1323326.6670075217 1.3213854767518438 0.9863282801419584 0.9591833129579742 0.8073079591046962 0.9003406990915219 1.0723351819329454 1.0185639500006305 1.0507937253632 1.160861722862683 1.0 20.335737808339452 2.6892203525739586 24.856231893050932 1.0590274692532122 0.9820252214564269 0.0555446727920349 0.1298617686630969 1047.6766455068914 527788.3785224293 0.043558233554202797 0.04106714186681026 488.90035495540826 -2.6892203525739586 -0.07700224779678533 NVAEALGHS(ph)PKDPGGGGGPVR ddPTM_BT-474_Trastuzumab_2h_R1 5 NVAEALGHSPKDPGGGGGPVR 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR 159.65 1.3427e-11 3547140000.0 1616740.0 1220030.0 1154290.0 1130380.0 1094910.0 1533280.0 1461250.0 1310390.0 2193490.0 1473340.0 True False 1608035.6514767017 1260637.9610262911 1316803.9987314607 1273485.9920995284 1234340.298459987 1427287.962552887 1390563.754982916 1408177.9558255926 1652933.7807601348 1379310.1798101647 1.1658259867972676 0.9139626310883847 0.9546830132963227 0.9232774547308852 0.8948968234468261 1.0347838966499365 1.0081588429763493 1.020929140115098 1.1983771344220986 1.0 20.395515496483338 1.4996023637696443 3.7901481763370874 1.1027947001826846 0.9782109591944058 0.2042774306398104 0.08631783730782218 0.26575549042833907 8.002064712215201 0.05579623855659452 0.021608628790257347 31.593836314681184 -1.4996023637696443 -0.12458374098827873 NVALLSQLYHSPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVALLSQLYHSPAR 14 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 0 ; 236.05 2.9673e-17 752110000.0 1169670.0 747980.0 452300.0 690310.0 375410.0 729440.0 322640.0 417370.0 945420.0 759820.0 False True 1163372.6266825553 772876.0621365426 515979.9085379243 777703.1752209216 423216.23827060056 679015.5297170632 307032.67059550947 448516.2687619162 712433.9089789548 711327.6370853698 1.6354947650416307 1.0865261264181503 0.7253758769336262 1.0933121879075616 0.5949666738729685 0.9545749304768982 0.4316332651625358 0.6305340118650383 1.0015552213015622 1.0 19.44015469183903 NVDILKDPETVK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVDILKDPETVK 12 1 O14980 O14980 XPO1 Exportin-1 0 139.89 0.00027785 0.0 842560.0 601440.0 469270.0 458570.0 443030.0 707760.0 563170.0 615170.0 1081400.0 725940.0 False True 838023.7505772156 621458.5668218427 535339.1370320393 516624.91498175875 499447.2444554596 658834.2170878327 535927.3155816785 661077.1091699647 814903.460017601 679609.8876914979 1.2330952885688855 0.9144342630634997 0.7877153448289016 0.7601786323866369 0.7349028516226924 0.9694300053899508 0.7885808097968071 0.9727302694425394 1.1990753442179438 1.0 19.374347316982075 1.4697159699763827 5.200965608865882 1.0988628942281606 0.8747660171525989 0.26044714595966534 0.1437919371145167 0.2167742758119057 12.698020271160203 0.09096065004547046 0.03703275174998754 29.492797571065434 -1.4697159699763827 -0.2240968770755617 NVDLLSDMVQEHDEPILK ddPTM_BT-474_Trastuzumab_2h_R1 8 NVDLLSDMVQEHDEPILK 18 0 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W543;F8W118;F8VUX1;H0YHC3;H0YH88;F8W020;P55209-3;F8VXI6 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 ;;;;;;; 345.77 3.0468999999999996e-90 4652986000.0 5381846.0 4828252.0 4576152.0 4346986.0 4332122.0 5668694.0 5500911.0 5148626.0 7469325.0 5880333.0 False True 5352870.739115302 4988957.449080036 5220434.424973774 4897313.981893489 4883792.058201202 5276830.526450341 5234810.9194092965 5532842.616313083 5628609.937577194 5505045.113533639 0.9723572884000113 0.9062518737249128 0.9483000261232779 0.889604695491759 0.8871484170392819 0.9585444655989731 0.9509115386793112 1.0050494595786519 1.022445742313679 1.0 22.392322955966602 1.9440004701326268 1.609215900518254 1.0139303442266654 0.9216284629363272 0.6603172841832201 0.026518303441022253 0.21996530627824978 1.060734192669395 0.01767627442740464 0.008220889159398465 87.90234683911866 -1.9440004701326268 -0.09230188129033823 NVDVYDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 NVDVYDKR 8 1 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ;; 155.42 0.00065622 1887940000.0 2121830.0 1945150.0 1924120.0 1907830.0 1691500.0 2186950.0 2146460.0 1952010.0 3076530.0 2364030.0 False True 2110406.3030374767 2009893.141881992 2195019.371249146 2149361.0823857817 1906902.4986940157 2035771.2940265571 2042627.529526519 2097678.8983059363 2318360.4048899137 2213155.5814520936 0.953573404745815 0.9081571845768127 0.9918052710098907 0.9711748692224994 0.8616215302147265 0.9198500598366649 0.9229480053934175 0.9478226094387857 1.0475361173518554 1.0 21.077673443282677 1.3373896947502322 5.238896653907821 1.0228591726123537 0.9328618085853736 0.5059367614433952 0.0354034393011065 0.16325982654169993 6.494160683677786 0.02601077102809736 0.009086840561089691 21.746516301404693 -1.3373896947502322 -0.08999736402698011 NVEELVIVLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVEELVIVLKK 11 1 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 132.32 0.0019441 0.0 118080.0 129390.0 112820.0 104930.0 100980.0 135880.0 126030.0 106520.0 167710.0 119370.0 False True 117444.2703999214 133696.6679320933 128704.0753509808 118214.12724128463 113839.20444464785 126486.93542711451 119933.44741864638 114469.06329760003 126380.11769886443 111751.70440220145 1.0509394109751744 1.1963725175135633 1.1516967552259132 1.0578284051563502 1.0186798049623778 1.131856879532504 1.0732135859601597 1.024316039830754 1.1309010307709886 1.0 16.76993730954878 3.7350624966306225 24.175312899846713 1.0627513201233547 1.139339860006889 0.2689040791096756 0.053038674900180195 224.47237212199275 1551319.5669015558 0.013402532973352619 0.021685075634320476 5433.285129101041 -3.7350624966306225 0.0765885398835342 NVFEVGPGDS(ph)PTFPR ddPTM_BT-474_Trastuzumab_2h_R1 4 NVFEVGPGDSPTFPR 15 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 NVFEVGPGDS(0.997)PT(0.003)FPR;NVFEVGPGDS(0.949)PT(0.051)FPR;NVFEVGPGDS(1)PTFPR;NVFEVGPGDS(0.998)PT(0.002)FPR 240.34 8.1279e-18 1065880000.0 773690.0 766940.0 697390.0 700990.0 726420.0 860650.0 757210.0 712360.0 860610.0 728660.0 True False 769524.5390050397 792467.1342749805 795576.4501774544 789735.2621258752 818925.2811713318 801155.2912521807 720580.8594768961 765519.9204907847 648524.1970831781 682156.294962788 1.1280765781792246 1.1617090395951122 1.1662671092419568 1.1577042797339512 1.2004950877364615 1.1744453538992616 1.0563280948923943 1.1222060488828944 0.9506973722474488 1.0 19.379742800393295 1.537707322782206 1.2461225101939368 0.9787270422963354 1.163221252232734 0.7442164474535622 0.039584364145328 0.20259274810218003 0.6028742744833954 0.03369718547152436 0.011781295057934448 34.49112204270048 -1.537707322782206 0.18449420993639865 NVFIIGATNRPDIIDPAILRPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVFIIGATNRPDIIDPAILRPGR 23 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 230.71 1.8972e-33 12108700000.0 7403000.0 5255300.0 4140400.0 5056500.0 3912600.0 6049700.0 3431400.0 4163400.0 7391400.0 6003900.0 False True 7363143.070550616 5430219.483604063 4723332.330998057 5696652.38154538 4410846.418202908 5631498.478461988 3265410.072779042 4474094.0493168235 5569888.509685692 5620725.9618026 1.3099985874759161 0.9661064283344922 0.8403420417748415 1.0135082941703193 0.7847467476938377 1.0019165703385287 0.5809587756048163 0.7959993210346721 0.990955358353638 1.0 22.422325047431105 7.823580292445017 0.9313071814038117 0.8449987029274967 199.9999971933824 0.48279371180652153 0.1317010961665045 596.2846589313766 1.6270124938986859 0.03986441754429888 252072.0821468589 66616267.01931992 -7.823580292445017 199.15499849045491 NVFYELEDVR ddPTM_BT-474_Trastuzumab_2h_R1 7 NVFYELEDVR 10 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 ;;;;;; 132.78 0.00049925 463578000.0 735683.0 829336.0 751805.0 777491.0 691362.0 802120.0 733635.0 737742.0 1017585.0 777307.0 False True 731722.1644700647 856939.9474158016 857652.6091937962 875921.2808820516 779402.852676377 746671.3323873791 698146.2722921406 792796.0542179703 766814.8116904127 727698.6017739967 1.0055291609551802 1.1776028500353553 1.178582186502757 1.203686909314811 1.0710517386955736 1.0260722372794593 0.9593893276559652 1.089456613335903 1.0537533119083338 1.0 19.47298151310031 3.04461582429599 5.928037500432563 1.032018017720851 1.1463954204707334 0.45454576204089603 0.05939741909864651 0.1751932815237713 14.89778600952518 0.017604723986781416 0.02095551974286842 1108.1940761155292 -3.04461582429599 0.11437740274988228 NVFYELEDVRDIQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVFYELEDVRDIQDR 15 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 58.658 0.09231 0.0 44985.0 45392.0 42559.0 45115.0 37315.0 47376.0 45651.0 43776.0 73449.0 58503.0 False True 44742.80575830334 46902.84527995656 48550.93727054053 50826.554374254825 42066.84406666704 44101.0086311082 43442.68672624473 47042.787410023855 55348.4781161761 54769.28845306182 0.8169323907986984 0.8563712731114458 0.8864628086623672 0.9280119535935549 0.7680735911462319 0.8052141971664191 0.7931942874057205 0.8589263935816931 1.0105750810257588 1.0 15.741079516956116 1.2698818779673824 5.048560292077875 1.0078224510843772 0.8382100563184122 0.695928287398774 0.04406282830663605 0.10194437096629728 6.0392261226165145 0.03659453480518717 0.011800427980911568 18.615807438413434 -1.2698818779673824 -0.169612394765965 NVGESVAAALS(ph)PLGIEVDIDVEHGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVGESVAAALSPLGIEVDIDVEHGGK 26 0 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 1 NVGES(0.004)VAAALS(0.996)PLGIEVDIDVEHGGK 63.776 0.027304 11799000.0 15433.0 13684.0 10825.0 10713.0 12578.0 12961.0 13034.0 13830.0 19274.0 13569.0 True False 15349.9104427675 14139.463667847318 12349.065907413276 12069.26470157137 14179.733744353143 12065.036576912225 12403.49562528474 14862.064827317025 14524.180958368093 12703.014802994632 1.208367515965492 1.1130793663653809 0.9721366225993915 0.9501102603396273 1.1162494859889784 0.9497774161506913 0.976421410007388 1.1699635919351534 1.1433648770482527 1.0 13.63288331159909 -0.594537408484511 7.599402531523753 0.9999999986517761 1.0635918301526257 0.043666916143823564 0.09255001865782705 0.0 0.0 0.09313266532784363 0.02195157957087982 0.2543680680657542 0.594537408484511 0.06359183150084957 NVGSAGVTVVIVRDDLLGFALR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVGSAGVTVVIVRDDLLGFALR 22 1 Q9Y617;Q9Y617-2 Q9Y617 PSAT1 Phosphoserine aminotransferase 0 72.64399999999998 0.013736000000000002 9140500.0 5608.4 6850.9 6030.7 5112.7 6607.8 5795.1 5530.8 4854.7 7996.7 7961.3 False True 5578.2049975518175 7078.928065043492 6879.770140215909 5759.967295783057 7449.264162500934 5394.498377198055 5263.254074292222 5216.982365667101 6026.020435290139 7453.203017988156 0.7484305719418795 0.9497833411968842 0.9230622221898052 0.7728177109735898 0.9994715217769171 0.7237825622324444 0.706173448058434 0.6999651496243988 0.8085141946014968 1.0 12.863644842463893 2.707575725551842 24.982966174513265 0.7569154963619752 0.8792422217250684 0.11885551910525727 0.10883822708667544 954.8841699930078 769917.6883397227 0.033088870071117445 0.03119959564098063 510.0065168674535 -2.707575725551842 0.12232672536309319 NVHELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NVHELEK 7 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749;P35749-2;P35749-4;P35749-3;P13533 P35580;P35749;P13533 MYH10;MYH11;MYH6 Myosin-10;Myosin-11;Myosin-6 0 ; 84.476 0.04011 460270000.0 776460.0 774000.0 719960.0 696390.0 708270.0 861680.0 842960.0 660860.0 1088650.0 862740.0 False True 772279.6256328159 799762.1221071194 821324.1099954983 784552.9025975247 798463.9862548112 802114.0897765394 802182.8043800837 710176.7289790844 820366.7946626248 807679.1945711242 0.9561712506942742 0.9901977511402795 1.0168939790898286 0.9713669831672717 0.9885905092290929 0.9931097583892329 0.9931948349939124 0.8792807017347855 1.0157087122916888 1.0 19.62342285119516 NVHMNDNVLHSAFEVGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVHMNDNVLHSAFEVGAR 18 0 Q13630;E9PP14;A0A0J9YX13;E9PKL9;E9PLH9 Q13630 TSTA3 GDP-L-fucose synthase 0 162.33 2.0745e-11 163810000.0 56283.0 61244.0 62896.0 67094.0 55827.0 62897.0 62283.0 50479.0 86025.0 63484.0 False True 55979.97858162913 63282.46951722022 71751.21009816759 75588.0935206972 62936.23753744663 58549.07843361226 59270.1333458347 54245.9993071682 64825.29142594255 59432.39676861316 0.9419101639056346 1.0647807081312313 1.2072743823123102 1.2718331689529982 1.0589550642299501 0.9851374270090452 0.9972697816073245 0.9127345060365469 1.0907399827458655 1.0 15.858961942164989 2.9999573274489 24.99999999999992 0.9889739151315466 1.1287649149216998 0.29189266827282256 0.09056204121128783 1.8471023402689988 1083083.88709736 0.028040789478125445 0.03318838823143575 999.9017476470362 -2.9999573274489 0.1397909997901532 NVIGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVIGAR 6 0 P62258;P62258-2;B4DJF2;I3L3T1;K7EIT4 P62258 YWHAE 14-3-3 protein epsilon 0 106.29 0.075031 147040000.0 126140.0 131970.0 107060.0 115080.0 99095.0 135050.0 131370.0 115820.0 148720.0 132530.0 False True 125460.87625547135 136362.5416724505 122133.1174177983 129649.11620058188 111714.16086791818 125714.31137350482 125015.13121786523 124463.07652204312 112069.94874590135 124071.82193535856 1.0111955663940881 1.09906133032765 0.9843743366759753 1.0449521428655177 0.900399132738788 1.013238214870432 1.0076029292372133 1.0031534524163626 0.9032667288813556 1.0 16.920815975319528 3.8417455400451797 1.8112445394980279 0.9801422444702029 1.050578671261297 0.2349431527848579 0.04918188376122039 0.5063458254265137 3.2013039084290966 0.013505154335643338 0.0330315227259425 6946.1721120677685 -3.8417455400451797 0.07043642679109408 NVIISSAAERPLEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVIISSAAERPLEIR 15 1 P78346;P78346-2;Q5VU11 P78346 RPP30 Ribonuclease P protein subunit p30 0 86.641 0.0068203000000000005 261730000.0 131640.0 152470.0 120080.0 148810.0 136490.0 146520.0 113250.0 105290.0 153320.0 144140.0 False True 130931.26486657892 157544.87177993864 136986.22024592943 167649.33074216702 153871.19246038827 136391.41727098066 107771.66484298739 113147.27445178671 115536.3403827435 134940.8617955374 0.9702862655862252 1.1675104907707707 1.0151574432175419 1.2423911372093468 1.140286125440151 1.0107495643361248 0.7986584894224492 0.8384952707892709 0.8561998111276652 1.0 17.041967755141915 2.4342863954526073 4.06749185080677 0.8564617455600734 1.1109612261837698 0.6142723332985558 0.0866975198942521 0.1262083380782096 4.514227633778766 0.029742481600441233 0.025099266843239862 271.82312152274284 -2.4342863954526073 0.25449948062369643 NVIPDT(ph)PPSTPLVPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVIPDTPPSTPLVPSR 16 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 NVIPDT(0.969)PPS(0.016)T(0.016)PLVPSR;NVIPDT(0.766)PPS(0.113)T(0.113)PLVPS(0.007)R 95.654 0.041128 374230000.0 533670.0 585930.0 527940.0 561190.0 526800.0 615520.0 552590.0 509790.0 645170.0 556500.0 True False 530796.7800163111 605432.3258478347 602269.3630632573 632236.596459893 593884.8574117698 572970.5511782283 525859.1106012046 547833.1184611671 486176.49833508115 520983.69355637947 1.018835688297545 1.1620945786517527 1.156023442791461 1.2135439252312685 1.1399298380295682 1.0997859592628938 1.0093580991211917 1.0515360178003 0.9331894728149844 1.0 18.99087869225057 2.3045979313943437 1.789951993658043 0.9993510277671663 1.145192853292056 0.6039240287536369 0.05332989018725981 0.2504467190302845 1.6253564170915131 0.026392885312900988 0.017793845061020087 201.64986305028646 -2.3045979313943437 0.14584182552488956 NVKPDQWVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NVKPDQWVK 9 1 E9PLK3;P55786;P55786-2;H0YCQ5 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ; 108.47 0.0023769000000000004 1056610000.0 1926860.0 1740970.0 1639720.0 1726520.0 1541620.0 2125600.0 1726880.0 1556840.0 2358700.0 2036320.0 False True 1916485.99985427 1798917.1340114118 1870578.3232982638 1945097.2549759175 1737936.1691023775 1978662.2751241878 1643344.2170777733 1673019.3062733347 1777429.9899607138 1906360.314218737 1.0053115277106903 0.9436396260423846 0.9812302057205081 1.0203198421978563 0.9116514628110148 1.0379267027152113 0.862032326638759 0.8775986857232548 0.9323683338892516 1.0 20.862389392878672 2.2306778697494667 24.99949633736131 0.9029293554087646 0.9798672398838326 0.2766919280403727 0.049219920946953453 185.54723082084263 588442.7075622868 0.01719064461616254 0.012926395025097454 170.0896430547453 -2.2306778697494667 0.076937884475068 NVLFSHLDDNER ddPTM_BT-474_Trastuzumab_2h_R1 4 NVLFSHLDDNER 12 0 P10644;P10644-2;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 0 ;;; 192.18 4.4171e-06 3047640000.0 2128160.0 1762900.0 1474130.0 1611140.0 1309370.0 1801550.0 1277970.0 1300490.0 2132880.0 1939140.0 False True 2116702.2230208036 1821577.0608044465 1681674.6906323456 1815110.1588060956 1476110.5082559772 1677013.0888925411 1216149.708780507 1397539.167554412 1607260.3031277456 1815382.425018721 1.1659814449283188 1.003412303490633 0.9263473455820216 0.9998500226680213 0.8131127017166947 0.9237795110169401 0.6699137834651923 0.7698318262280192 0.8853563199562048 1.0 20.79184206496201 4.871799701912044 0.5842319347919716 0.8144873641265986 1.4185307994938339 0.49651911301982254 0.09462343696248013 3.201984070313114 0.7435163040443483 0.046017847426801095 1.3555174904636478 74438.85801871392 -4.871799701912044 0.6040434353672353 NVLS(ph)DSRPAMAPGSSHLGAPASTTTAADATPSGSLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR 37 1 Q9BR76 Q9BR76 CORO1B Coronin-1B 1 NVLS(0.832)DS(0.167)RPAMAPGSS(0.001)HLGAPASTTTAADATPSGSLAR;NVLS(0.753)DS(0.197)RPAMAPGS(0.025)S(0.025)HLGAPASTTTAADATPSGSLAR 197.68 2.2903999999999996e-30 821670000.0 97959.0 112815.0 123306.0 129127.0 109932.0 154186.0 148760.0 133341.0 165963.0 157874.0 True False 97431.59962826796 116569.97907689244 140666.4130050346 145474.46496031052 123931.18858198692 143527.4847348035 141563.9104816142 143291.58251187837 125063.64244026375 147798.34615726845 0.6592198232353255 0.7887096311135532 0.9517455144955078 0.9842766765841537 0.8385153948212309 0.9711034559350181 0.9578179604999075 0.9695073472568188 0.8461775499651851 1.0 17.173270600456352 4.463188901918971 2.6614853468293074 0.9407794516121826 0.661343792531677 0.7473256347335508 0.05270568161244644 0.13958863637303767 1.791833067037303 0.01287690894212706 0.06532749879360497 29052.860708726002 -4.463188901918971 -0.2794356590805056 NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR 37 1 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ;; 239.56 5.0064e-50 1736730000.0 403445.0 494103.0 483942.0 521716.0 489715.0 555906.0 514346.0 496313.0 538209.0 558326.0 False True 401272.89694695326 510548.9196634286 552076.8271007299 587765.1921072538 552077.3024817863 517477.5266819665 489465.11898747203 533350.3962863485 405574.60358111135 522693.1566730628 0.7677026029976203 0.9767660302137259 1.0562159080380809 1.1244937581512908 1.0562168175220685 0.9900216218167198 0.9364291702285009 1.0203890934427358 0.7759324919472641 1.0 18.995604745465123 -0.7004151896628197 7.547661682685714 1.0000677470694714 0.9797731434973184 0.0 0.11081450593833438 0.0 0.0 0.10626018108229973 0.025045764871134885 0.19933557366828786 0.7004151896628197 -0.02029460357215307 NVMEEGKDFQPSR ddPTM_BT-474_Trastuzumab_2h_R1 7 NVMEEGKDFQPSR 13 1 P35606;P35606-2;H0YAC7 P35606 COPB2 Coatomer subunit beta 0 ;;;;;; 223.06 1.4965e-11 4820530000.0 4513911.0 4117032.0 3905399.0 3903701.0 3843555.0 5061467.0 4802865.0 4557745.0 6787856.0 4811231.0 False True 4489608.604718656 4254064.921321604 4455245.232863366 4397909.146344515 4333008.946714685 4711579.699701731 4570532.071223966 4897867.075660156 5115079.841410428 4504174.118477906 0.9967662187615047 0.9444716854683182 0.9891369906385691 0.976407445774032 0.9619985446252991 1.0460474164115825 1.0147325460784993 1.087406247366674 1.1356310184427252 1.0 22.102831168280773 2.3357308087086874 1.3510472231685362 1.078715759449397 0.9726287912975532 0.5409514401980804 0.03787938525653235 0.2926573697442602 1.0622436674067228 0.020525159661827042 0.013129985564027355 216.63609004196218 -2.3357308087086874 -0.10608696815184382 NVMVEPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVMVEPHR 8 0 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R2U2;M0R1H0;M0R2B0;M0QXC9 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ; 110.87 0.0033424 1028330000.0 738020.0 645550.0 523120.0 574370.0 534190.0 717470.0 490310.0 558190.0 768760.0 667540.0 False True 734046.5823217306 667036.7415067839 596770.7489594492 647085.1831085177 602215.9301078086 667872.9876427137 466591.832133908 599844.9722313872 579309.3988562344 624937.0256902525 1.174592882396374 1.06736633306377 0.9549294159684438 1.0354406228272395 0.96364258373498 1.0687044617096222 0.7466221602385459 0.9598486688620332 0.9269884405014701 1.0 19.253351292528667 7.999999808072068 0.4514915842636132 0.925715944022707 6.653569651361643 0.43250789716300164 0.08059333595630225 77.51579197501843 0.931065058365378 0.04694059592872741 409.6323206347549 99999955.8069702 -7.999999808072068 5.7278537073389355 NVNHSWIER ddPTM_BT-474_Trastuzumab_2h_R1 2 NVNHSWIER 9 0 Q4G0J3;Q4G0J3-3;D6RFF0 Q4G0J3 LARP7 La-related protein 7 0 ; 157.24 6.900399999999999e-05 404810000.0 282970.0 272890.0 243170.0 215262.0 199956.0 270710.0 193621.0 204726.0 344120.0 264010.0 False True 281446.52096092276 281972.9786845114 277406.2223284698 242514.14712869015 225419.21136793442 251996.4548827953 184254.81252595186 220003.69369756366 259316.2369717564 247160.65576966715 1.138718944099287 1.1408489664604482 1.122372092211104 0.9812004518821671 0.9120351726935296 1.0195654081676928 0.7454860157745404 0.8901242514204547 1.0491808907216091 1.0 17.915089580771525 3.645888315365701 2.2385154885046945 0.9178671635417027 1.142788800026744 0.54125094283381 0.08065371516738098 0.2218463428161558 2.168341911752082 0.023626943703093203 0.043419058683458266 4424.7456947706705 -3.645888315365701 0.22492163648504138 NVNVQNFHISWK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVNVQNFHISWK 12 0 O43707 O43707 ACTN4 Alpha-actinin-4 0 75.115 0.03468 411470000.0 839020.0 903500.0 844130.0 806150.0 822120.0 1142500.0 967830.0 890150.0 1259700.0 1112200.0 False True 834502.8095438844 933572.4513227175 962976.1666905094 908208.5073435784 926812.1089129924 1063521.6641557156 921012.3654303623 956577.513090112 949263.8141151953 1041218.4437976733 0.8014675638093505 0.896615361439109 0.9248550795721712 0.8722554933151558 0.8901226389465379 1.0214203085729974 0.8845524884011091 0.9187097278080789 0.911685554332779 1.0 19.989841341825944 5.985392984525479 0.8405912252605033 0.9274512768332778 3.1098047689747496e-28 0.4172304932019647 0.045287061996733935 16.626204386785922 1.7704496063696125 0.014382089928730402 23.034538831407318 966925.4350334072 -5.985392984525479 -0.9274512768332778 NVPESSPHS(ph)PCEGLPSEAALTPRPEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVPESSPHSPCEGLPSEAALTPRPEGK 27 1 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52;H0YCW2;S4R3B3;H7C453;S4R3U7 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 NVPESSPHS(1)PCEGLPSEAALTPRPEGK 143.75 1.0917e-07 479040000.0 79276.0 97491.0 83348.0 87840.0 91492.0 116360.0 116120.0 95020.0 130330.0 101230.0 True False 78849.18682439163 100735.92900044595 95082.67392619695 98960.53499356199 103142.9638844298 108316.30708197705 110502.83197852263 102110.87490178335 98211.91783252651 94769.41473263681 0.8320109082327956 1.0629582263923636 1.0033054883207193 1.044224397425574 1.0883570841438288 1.1429458268530905 1.1660178791889018 1.077466555954347 1.0363250433655382 1.0 16.532133907732835 5.572086169326375 0.9630283986229293 1.0882950506397115 7.375054768531729e-14 0.6349135426779111 0.05291616436701506 5.364033989374493 1.2134000456867287 0.01642016860097723 8.90656162276477 373324.2225304927 -5.572086169326375 -1.0882950506396378 NVPHEDICEDS(ph)DIDGDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 1 NVPHEDICEDS(1)DIDGDYR 208.17 1.2645e-18 0.0 60880.0 69874.0 56473.0 63882.0 65322.0 75970.0 62401.0 56749.0 86199.0 68253.0 True False 60552.22884440386 72199.71385027503 64423.907527884534 71969.45465003098 73640.36950617241 70718.37271414418 59382.425235030874 60983.89854558305 64956.41145742298 63897.035105666895 0.9476531852263299 1.1299384037284037 1.0082456474130035 1.1263348061614233 1.1524849217869484 1.1067551506450464 0.9293455500216844 0.9544088930688822 1.016579428920359 1.0 15.963461369601397 2.2431434861853203 24.999987121445596 0.9679783255525057 1.0832381961577875 0.3974698669478399 0.06201423362527031 104.5317894650657 570234.2374385144 0.021718373908417507 0.017608824849608358 175.04249145016564 -2.2431434861853203 0.11525987060528176 NVPHEDICEDSDIDGDYR ddPTM_BT-474_Trastuzumab_2h_R1 4 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 0 ;;; 178.43 8.8811e-14 2098340000.0 978920.0 1013720.0 924137.0 1021060.0 902600.0 1065250.0 1076450.0 1041810.0 1164100.0 1121060.0 False True 973649.6034882377 1047461.057393319 1054247.4568572 1150326.09130836 1017540.7598706594 991611.7748287737 1024378.0010616651 1119555.152403987 877223.153140826 1049512.9910122466 0.927715627940118 0.9980448706814495 1.004511107423632 1.0960570294598069 0.9695361263601414 0.944830395927136 0.9760508062636376 1.0667377745597846 0.8358382989568824 1.0 20.00128859393704 NVPLPEFPEHPFQEEHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVPLPEFPEHPFQEEHLK 18 0 A0A3B3ISG5;P14735 A0A3B3ISG5 IDE Insulin-degrading enzyme 0 166.6 1.4614e-11 297870000.0 249150.0 220360.0 216730.0 215470.0 213460.0 272540.0 277410.0 205610.0 341230.0 258850.0 False True 247808.60408316748 227694.54938956723 247243.70014906957 242748.47990736304 240642.86572345524 253699.95129015174 263990.6184908886 220953.66226642474 257138.43874774055 242329.9713873658 1.0226081514574359 0.9396053987296364 1.0202770162253234 1.0017270192275485 0.9930379818300984 1.046919412558387 1.0893849282427313 0.9117884222138957 1.0611086910776848 1.0 17.886613322882177 5.094987364250967 20.766255261562577 1.0035908362518362 2.8096696090602387 0.004149314482490674 0.05047204618358479 4302.424831046984 1141613.018624232 0.011482171513080062 78566.67739061703 124447.8403285678 -5.094987364250967 1.8060787728084025 NVPNWHR ddPTM_BT-474_Trastuzumab_2h_R1 5 NVPNWHR 7 0 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 ;;;; 134.44 0.0031745 6024490000.0 6239510.0 6003500.0 5260650.0 5764930.0 5158280.0 6453270.0 5246940.0 5284710.0 7896760.0 6438060.0 False True 6205917.17143473 6203322.868307609 6001303.793610505 6494769.546908416 5815156.382479092 6007170.634263591 4993125.466942727 5679081.89541363 5950709.309162755 6027177.498899525 1.0296556178356853 1.0292251836685158 0.9957071605583635 1.0775806002219557 0.9648224867346042 0.9966805582481042 0.8284351120992204 0.9422456691296295 0.9873127695756874 1.0 22.52305112175738 2.820328963707497 2.1748509314989914 0.9336469665043902 1.0283613991854674 0.3398294678014765 0.05122668996896214 0.3087180911335484 2.875422164418662 0.017509685140260037 0.018308168305898067 661.1940910310103 -2.820328963707497 0.09471443268107727 NVPQEESLEDS(ph)DVDADFK ddPTM_BT-474_Trastuzumab_2h_R1 4 NVPQEESLEDSDVDADFK 18 0 O00505 O00505 KPNA3 Importin subunit alpha-4 1 NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK 351.16 2.2443e-90 2278470000.0 2725090.0 1912850.0 1745420.0 1684180.0 1727480.0 2510030.0 2313220.0 2323170.0 3575870.0 2410840.0 True False 2710418.4182259594 1976518.0559077559 1991159.964537393 1897397.0153171334 1947464.3384238514 2336517.5340750697 2201320.7112414567 2496536.742218229 2694644.7527031084 2256978.1271760333 1.2009059306291452 0.8757364690905562 0.8822238640959998 0.8406802850549493 0.862863629458629 1.035241549725853 0.9753398514303654 1.1061413099921953 1.193917087745414 1.0 21.105961006477063 2.0291582070482503 1.6237799936574209 1.1111153148949855 0.9279676193608337 0.2667787190012598 0.10982890983339265 0.4547370516078491 2.2476057742052213 0.06896802791262555 0.03454926654114848 106.94443910258097 -2.0291582070482503 -0.18314769553415178 NVQRPESVSDHMYR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVQRPESVSDHMYR 14 1 Q7Z4H3-2;Q7Z4H3;V9GYS5;V9GZ04;Q7Z4H3-3 Q7Z4H3-2 HDDC2 HD domain-containing protein 2 0 186.69 6.2102e-07 254120000.0 124300.0 149410.0 138190.0 145900.0 137620.0 147500.0 154100.0 147410.0 188890.0 152560.0 False True 123630.78261102842 154383.02152974764 157645.95083098765 164370.92504053586 155145.09126235323 137303.67217765228 146645.594280833 158410.4827328129 142340.5904963239 142823.4901868128 0.8656193911052001 1.080935785337657 1.1037816722220353 1.1508675836554552 1.0862715304003832 0.961352169717036 1.0267610327196242 1.1091346565303253 0.9966189056866117 1.0 17.12387375344664 4.741641588686253 24.747488596770868 1.0636006244798013 0.8656193069839225 0.5019168901393702 0.05697487049048538 216.8461176987653 1741687.699237198 0.014075121560259387 0.10098709832029999 55162.201287694435 -4.741641588686253 -0.19798131749587877 NVRS(ph)DIS(ph)DQEEDEESEGCPVSINLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 NVRSDISDQEEDEESEGCPVSINLSK 26 1 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;H0YBA1 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 2 NVRS(1)DIS(1)DQEEDEESEGCPVSINLSK;NVRS(1)DIS(1)DQEEDEESEGCPVSINLSK 96.052 0.004148 361130000.0 287830.0 247140.0 220610.0 249240.0 236210.0 329190.0 323390.0 263350.0 375390.0 328380.0 True False 286280.3552609196 255365.90550071493 251669.9704235053 280793.75844484713 266289.94337364077 306433.8701299075 307746.3902302313 283002.5142642037 282880.16446828895 307422.50725973776 0.9312277029184614 0.8306675648994014 0.8186452341008078 0.9133806140212359 0.8662018462709871 0.9967841094699194 1.0010535434551637 0.9205653703978744 0.9201673845867334 1.0 18.22986326706253 2.751181369772474 24.47408960334703 0.9621502751583314 0.8690590085381835 0.5647295769666385 0.04182153008169873 461.85868565007985 895632.5566182302 0.013265586620939518 0.0139838627623546 563.873090966345 -2.751181369772474 -0.09309126662014788 NVS(ph)ES(ph)PNR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVSESPNR 8 0 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 NVS(1)ES(1)PNR;NVS(1)ES(1)PNR 130.99 0.0014972999999999998 888950000.0 1848070.0 1806760.0 1584440.0 1652070.0 1672170.0 1495320.0 1800950.0 1703080.0 2076000.0 1775080.0 True False 1838120.1964598806 1866896.9143905148 1807515.3798006382 1861221.8926094475 1885110.9377719034 1391952.048004659 1713831.168202898 1830172.4776650106 1564397.6169747943 1661792.874677552 1.106106678196308 1.1234233476616395 1.0876899325683784 1.1200083481947725 1.1343838131076853 0.837620662126589 1.0313145484725004 1.1013240612312352 0.9413914578724766 1.0 20.664309145597837 NVS(ph)ES(ph)PNRK ddPTM_BT-474_Trastuzumab_2h_R1 5 NVSESPNRK 9 1 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 NVS(1)ES(1)PNRK;NVS(1)ES(1)PNRK;NVS(1)ES(1)PNRK;NVS(1)ES(1)PNRK;NVS(1)ES(1)PNRK 110.9 0.0014788 3120480000.0 9053580.0 6853970.0 5453840.0 5858400.0 6092330.0 6618630.0 7824870.0 8030840.0 10987250.0 7607740.0 True False 9004836.531227307 7082100.248137648 6221693.266372914 6600072.839324722 6868152.113430997 6161099.686679152 7446351.144193778 8630142.06057923 8279589.459107081 7122207.519886094 1.2643322321182973 0.994368702170435 0.8735624803126234 0.9266892070887423 0.9643291204664084 0.8650547838541057 1.0455116792655414 1.2117229154700693 1.1625032598375478 1.0 22.763893041468407 1.9946689938058257 23.58576646431427 1.1433544822534452 0.9722718865006685 0.22801283686023788 0.11608568510156121 134.34111808836897 594361.5783962909 0.04487163229590111 0.032100481226465555 98.77999362693666 -1.9946689938058257 -0.17108259575277662 NVS(ph)ES(ph)PNRKNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVSESPNRKNEK 12 2 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 NVS(1)ES(1)PNRKNEK 99.451 0.018637 287600000.0 447890.0 400010.0 304040.0 410950.0 421030.0 511840.0 585440.0 545190.0 998100.0 560370.0 True False 445478.6100052566 413324.0910388487 346846.18923694495 462976.2278643477 474645.6748596757 476457.7055417605 557120.0306020174 585874.8462187251 752131.6288547895 524606.7068431061 0.849166821915004 0.7878742029931031 0.6611546987726105 0.882520604150053 0.9047647860164086 0.9082188605801689 1.0619765689893002 1.116788707762256 1.4337057057101812 1.0 19.000876726316182 2.26222938503868 1.0758789201159458 1.2114711843246992 0.7910990340754095 0.6646388898415243 0.11638836105726584 0.29057709758978284 0.6473452337230579 0.0775997241688279 0.04472078745585715 182.90660345416939 -2.26222938503868 -0.42037215024928976 NVSEELDR ddPTM_BT-474_Trastuzumab_2h_R1 3 NVSEELDR 8 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;; 155.42 0.0013139 702520000.0 1419950.0 1651660.0 1522400.0 1642430.0 1544030.0 1559550.0 1633400.0 1445610.0 1686150.0 1469770.0 False True 1412305.146971277 1706634.5046504475 1736740.687061982 1850361.4695978595 1740653.0683171875 1451741.9792858143 1554386.201806054 1553488.758858839 1270620.9257524302 1375968.0202665965 1.0264084093303565 1.240315530240146 1.2621955317867672 1.3447706940451627 1.2650388982005065 1.05506956404738 1.12966738972966 1.1290151631270091 0.923437832157062 1.0 20.392015509176005 1.7982125469670935 0.9104424627358593 0.9772342709579515 1.2260740348150025 0.471877327100912 0.09457020069996537 0.5103476425071395 0.7893452583895407 0.08566100246608861 0.03715060057332137 62.836581049917605 -1.7982125469670935 0.2488397638570511 NVSEELDRTPPEVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 NVSEELDRTPPEVSK 15 1 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 91.355 0.0050502 0.0 263790.0 223090.0 180900.0 198950.0 200500.0 208730.0 235310.0 199410.0 414010.0 252180.0 False True 262369.7839498242 230515.41578924697 206369.14758901283 224137.04960119678 226032.48654339364 194300.98639756886 223927.15632850653 214290.98678346258 311982.7829497756 236085.65649783984 1.1113330129491577 0.9764058486600865 0.8741282746709396 0.9493886792027436 0.9574172776797298 0.82301055167808 0.9484996236124809 0.9076832110951363 1.3214813113927155 1.0 17.848950867007016 1.261892667848548 24.999380503056045 1.1607407947028925 0.9377569690433232 0.42443948882925586 0.10102206832194154 168.82368717167833 180888.69183885862 0.06328260613633689 0.023078183586649915 18.27648472698727 -1.261892667848548 -0.2229838256595693 NVSES(ph)PNR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVSESPNR 8 0 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 NVS(0.01)ES(0.99)PNR 100.07 0.006679200000000001 534910000.0 410380.0 488010.0 431330.0 469840.0 431170.0 400040.0 467080.0 412370.0 565040.0 457020.0 True False 408170.55967750476 504253.1178417255 492057.5148124315 529321.69582622 486076.9437551871 372386.17639286834 444485.5559811254 443143.14337243146 425793.46314809105 427852.59232549305 0.9539980988755702 1.1785674012186655 1.150063184467266 1.2371590246753332 1.1360850733969594 0.8703609211968311 1.0388754537286493 1.0357378950629472 0.9951872929734746 1.0 18.706754306223704 2.870667279360379 11.238445367130465 0.9982736032942429 1.141288164629914 0.435215573341023 0.08072377499069809 0.46854512466429454 40.049937697977406 0.024546894532856644 0.0260425068777794 742.4501158659481 -2.870667279360379 0.14301456133567114 NVSES(ph)PNRK ddPTM_BT-474_Trastuzumab_2h_R1 6 NVSESPNRK 9 1 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 NVS(0.004)ES(0.996)PNRK;NVS(0.001)ES(0.999)PNRK;NVS(0.001)ES(0.999)PNRK;NVS(0.01)ES(0.99)PNRK;NVSES(1)PNRK;NVSES(1)PNRK 157.47 4.1938e-05 11881440000.0 7530070.0 6868990.0 6592110.0 6237300.0 6555170.0 6569260.0 7760470.0 7313570.0 9636250.0 7371770.0 True False 7489528.939789419 7097620.179757858 7520221.788352719 7026941.540475226 7389932.043963389 6115142.51857467 7385066.418225675 7859345.730955957 7261525.306634563 6901297.327310178 1.0852349325903492 1.0284472387055084 1.0896823353187957 1.0182058832138476 1.0708033132726449 0.8860859384184919 1.0700982826810113 1.1388214937290906 1.0521971394999707 1.0 22.71843615900436 -0.9668401383928622 5.2441452789830745 0.9999998026791918 1.051782098316305 0.04923644891816259 0.06321070575896412 1.5137729633516165e-07 2.994843520613932e-08 0.06349199680299314 0.014965149852838904 0.10793439501777338 0.9668401383928622 0.05178229563711334 NVSKPR ddPTM_BT-474_Trastuzumab_2h_R1 5 NVSKPR 6 1 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 RPL36 60S ribosomal protein L36 0 ;;;; 114.02 0.023383 2116430000.0 3327390.0 2781080.0 2469020.0 2435000.0 2368860.0 2242462.0 2646540.0 2883660.0 4353690.0 3434150.0 False True 3309475.7019477794 2873646.566601642 2816636.554893441 2743270.7503338265 2670520.27966675 2087445.8801277473 2518516.749435403 3098853.3521287763 3280781.435957122 3214979.6068762625 1.0293924399611765 0.8938304182258044 0.8760977982159397 0.8532778075688146 0.8306492128145971 0.6492874404749183 0.7833694322815451 0.9638796294386711 1.0204672617332071 1.0 21.616378155663774 1.591879185847574 4.90494310011311 1.0045365287969212 0.8408038739353394 0.3741440755809057 0.08964429305195142 0.17276106587625603 9.032820745695465 0.05546820273343033 0.025322309457266375 39.07321848915876 -1.591879185847574 -0.16373265486158184 NVSSFPDDATS(ph)PLQENR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 NVSSFPDDAT(0.012)S(0.988)PLQENR 198.88 1.5540000000000002e-17 0.0 79638.0 68051.0 54220.0 62994.0 61001.0 81937.0 60515.0 60831.0 86781.0 81225.0 True False 79209.23785661353 70316.03639730182 61853.704711311555 70969.03394107957 68769.11576874602 76272.88804895114 57587.65826025059 65370.51811355907 65394.9853558235 76041.15095977897 1.041662795168767 0.924710311585034 0.813424099064838 0.9332977347833381 0.9043671078192991 1.0030475221146342 0.7573222858069425 0.8596729177355035 0.8599946809118312 1.0 16.214492748350732 2.249503267854246 24.99996087673766 0.8542009193825265 0.9289694346066202 0.13324344247034325 0.0793010800002782 375.8175002918209 858605.2531329979 0.027014969733351168 0.022400119885909904 177.62466336281045 -2.249503267854246 0.07476851522409367 NVTELNEPLSNEER ddPTM_BT-474_Trastuzumab_2h_R1 4 NVTELNEPLSNEER 14 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ;;; 396.55 4.829799999999999e-114 2698100000.0 870274.0 1039540.0 1009580.0 950350.0 1009950.0 1062530.0 961160.0 978029.0 1064970.0 973460.0 False True 865588.5414805313 1074140.460484801 1151720.0885733308 1070664.2125584185 1138561.1460573599 989079.8020265826 914665.0188122361 1051014.4903106322 802522.4133668822 911332.9493789632 0.9498049445818844 1.1786476734071611 1.2637753187330512 1.1748332080915467 1.2493360926248125 1.085311139798688 1.003656259148255 1.1532716895914454 0.8806028728729374 1.0 19.797618703724186 2.5101320245297982 7.1123899210675035 1.0364255007223244 1.170358703502161 0.32251882899566187 0.10200015408962554 0.2865281300874626 49.11675349803436 0.03363552538195149 0.030948713645408438 323.69204361557803 -2.5101320245297982 0.13393320277983656 NVTFHGVLLDAFFNESSADWR ddPTM_BT-474_Trastuzumab_2h_R1 1 NVTFHGVLLDAFFNESSADWR 21 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 172.42 5.6295e-12 324270000.0 361740.0 243780.0 151960.0 212550.0 136680.0 223290.0 116250.0 138740.0 286160.0 249140.0 False True 359792.4320330924 251894.06993187807 173354.64714000197 239458.80820675776 154085.3878341697 207854.48786812232 110626.54338187443 149093.483307445 215639.7023475468 233239.67190051492 1.542586769657937 1.0799795244066366 0.7432468315850828 1.0266641444637923 0.660631129252714 0.8911626661727586 0.4743041459476097 0.6392286616276786 0.9245412694609039 1.0 17.831453672865166 NVVGAR ddPTM_BT-474_Trastuzumab_2h_R1 6 NVVGAR 6 0 P31946-2;P31946;Q4VY19;A0A0J9YWE8;Q4VY20;A0A0J9YWZ2;P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;P61981;Q04917;A2IDB2 P31946-2;P63104;P61981;Q04917 YWHAB;YWHAZ;YWHAG;YWHAH 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta 0 ;;;;; 175.84 0.0094901 1529330000.0 1490690.0 1526070.0 1442070.0 1467070.0 1503720.0 1375820.0 1305770.0 1287830.0 1716910.0 1566210.0 False True 1482664.2906712291 1576864.3174212058 1645100.921302859 1652800.9115779237 1695209.8287532765 1280712.8017319182 1242604.9165741953 1383934.414068235 1293800.5359153133 1466253.1369001565 1.011192578796979 1.075437983890623 1.1219760625923088 1.127227536625874 1.156150862420089 0.8734595476736753 0.847469570773583 0.9438577686483566 0.8823855194953378 1.0 20.483702764081254 2.7340046634309796 24.99986745654353 0.9040203274394605 1.1000331494529785 0.7591722144992825 0.05316665871036674 182.2222522683829 999904.8397595829 0.0171008464736636 0.016617700703658714 542.0067104095198 -2.7340046634309796 0.196012822013518 NVVHELR ddPTM_BT-474_Trastuzumab_2h_R1 5 NVVHELR 7 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;; 94.302 0.0143 1083783000.0 2036742.0 2068215.0 1756958.0 1851866.0 1749661.0 1966595.0 1868330.0 1774721.0 2393885.0 2111276.0 False True 2025776.4073753105 2137054.286012632 2004322.4146473 2086312.0457239035 1972469.9572967628 1830648.9165166782 1777951.7401863001 1907159.6928706379 1803944.1181655624 1976532.558125679 1.0249142616179967 1.081213804056521 1.014059903241854 1.0555414516937314 0.9979445818829473 0.9261921383438579 0.8995307124474132 0.9649017341152091 0.9126812056545226 1.0 20.914540289247494 2.9603758171254366 3.264342288876815 0.9376173900362964 1.0441020647879238 0.7081055301552979 0.03121817402767141 0.12398772114097387 2.6770410739670965 0.009255508864963157 0.010410219343248562 912.8003903363948 -2.9603758171254366 0.10648467475162737 NVVHQLS(ph)VTLEDLYNGATR ddPTM_BT-474_Trastuzumab_2h_R1 3 NVVHQLSVTLEDLYNGATR 19 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 NVVHQLS(0.945)VT(0.055)LEDLYNGATR;NVVHQLS(1)VTLEDLYNGATR;NVVHQLS(1)VTLEDLYNGATR 227.44 8.1748e-20 30098500.0 33071.6 32685.2 34018.8 34563.2 27976.5 36740.8 37579.9 29709.7 46886.7 36541.8 True False 32893.546180200196 33773.10712337936 38808.35134328968 38938.89757615525 31539.141445293022 34200.99497454028 35762.016667840886 31926.788676799773 35332.10103459155 34209.671038991066 0.9615276961508693 0.9872385818877322 1.1344263234527217 1.138242385662638 0.9219364141018994 0.9997463856217471 1.045377391296178 0.9332679241612895 1.0328103124499846 1.0 15.062116610732197 3.2295717921907143 24.999993693216275 0.9863817209165704 1.0561407114364632 0.211001326783115 0.06288316140435515 309.4829449432856 860741.4572585158 0.01910718041968447 0.023147332729582432 1696.5700350490586 -3.2295717921907143 0.06975899051989276 NVVHQLSVTLEDLYNGATR ddPTM_BT-474_Trastuzumab_2h_R1 2 NVVHQLSVTLEDLYNGATR 19 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 ; 286.7 3.3239e-40 1278530000.0 654360.0 639380.0 529460.0 585700.0 545390.0 638150.0 562900.0 598000.0 852170.0 677240.0 False True 650836.9984662308 660661.3767866276 604003.365851181 659849.5599468265 614842.183720207 594036.1925435172 535670.3765131788 642625.7965824715 642164.1219929713 634017.9633856659 1.0265276948791024 1.0420231206994286 0.9526597048225471 1.0407426887768598 0.9697551476884662 0.9369390566969974 0.8448820182518024 1.0135766392971575 1.012848466569945 1.0 19.274164190700997 3.0847721614834165 6.466677683380059 0.9566506996586054 1.0126378097395081 0.19628606521705394 0.05158714958566844 0.35618272983579263 22.142052689871818 0.015600056392473517 0.01870413687391398 1215.5481354320157 -3.0847721614834165 0.055987110080902736 NWDDMK ddPTM_BT-474_Trastuzumab_2h_R1 2 NWDDMK 6 0 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ; 140.12 0.027499000000000003 2137300000.0 2986900.0 2631800.0 2413400.0 2265700.0 2379700.0 3136800.0 3153600.0 2886600.0 4114800.0 2978100.0 False True 2970818.8622757904 2719397.8720433027 2753185.74235115 2552537.3876925474 2682740.68941304 2919960.3992329496 3001048.320078097 3102012.749857793 3100762.675495125 2788035.108320314 1.0655600617832954 0.9753815021653861 0.9875003848175501 0.9155327277174623 0.9622334673645089 1.0473183750516384 1.0764026289059592 1.1126161003498405 1.1121677292518808 1.0 21.4108172977761 2.5278845948106996 3.092098348735198 1.0867305496634636 0.9779295908652017 0.4813377280184402 0.04581737755599381 0.19659341853207596 3.7553112334401555 0.016401474008163063 0.014577292943416574 337.1976931190728 -2.5278845948106996 -0.1088009587982619 NWDDVLTVDYTR ddPTM_BT-474_Trastuzumab_2h_R1 2 NWDDVLTVDYTR 12 0 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 0 ; 247.31 2.9466e-16 205518000.0 254820.0 272440.0 258150.0 250610.0 276310.0 295090.0 283940.0 253460.0 301850.0 291200.0 False True 253448.07743316374 281508.00070654217 294495.27611997596 282337.2003043775 311496.4406823198 274691.12286714197 270204.73744386574 272374.4722438012 227463.11208277498 272615.3666911369 0.929691090085582 1.032619709311839 1.0802592667258855 1.0356613558921461 1.1426224591192387 1.0076142302658853 0.9911573977779384 0.9991163577818098 0.8343737729960111 1.0 18.056507360219943 1.6536457615539906 1.8954527666919019 0.9225898820119826 1.0412478409989223 0.30490918838233505 0.06530154764470239 0.3544396143980695 2.652870777545612 0.048662074652437395 0.018370271636234413 45.04491394357374 -1.6536457615539906 0.11865795898693976 NWDEWVPESR ddPTM_BT-474_Trastuzumab_2h_R1 2 NWDEWVPESR 10 0 H0YMJ0;H0YLJ3;Q9UBU8-2;B3KTM8 H0YMJ0 MORF4L1 0 ; 102.06 0.0099803 0.0 110320.0 125792.0 112667.0 123271.0 120651.0 121042.0 129843.0 128215.0 145310.0 117936.0 False True 109726.04937770413 129978.91067713033 128529.53428088046 138877.09596073956 136015.18969549632 112674.65144221969 123561.99804157164 137783.05436257788 109500.2975542425 110409.2235099105 0.993812345468175 1.1772468508073806 1.1641195381592684 1.257839621961237 1.2319187235592448 1.0205184663046367 1.1191274978080117 1.2479306527340106 0.9917676628204308 1.0 16.752501173329843 2.7538603261675507 24.748876221074866 1.1075861420556539 1.170778727654755 0.1335210236374097 0.09752961135110415 1950.1079204288644 3154497.6231140518 0.03090794370423834 0.032678916377378 567.3621062344538 -2.7538603261675507 0.06319258559910113 NWGGPDFER ddPTM_BT-474_Trastuzumab_2h_R1 4 NWGGPDFER 9 0 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 0 ;;; 93.649 0.021534 973000000.0 1189170.0 1196340.0 1040600.0 1100800.0 1012730.0 1166830.0 1103240.0 1034750.0 1439670.0 1099560.0 False True 1182767.6408492073 1236159.453697198 1187107.4349426553 1240161.1671324337 1141695.1625790088 1086169.788522373 1049872.066413928 1111968.2993540345 1084882.6190896444 1029385.1394193219 1.1490039981696343 1.2008716721853183 1.1532199071887757 1.2047591514989335 1.1091039872821957 1.0551636573412002 1.019902100982498 1.08022571608261 1.0539132318362676 1.0 19.973351429857885 2.9690470269342497 2.9277831422434053 1.0477183260183456 1.1768263667500887 0.8481114552055615 0.026814570587100593 0.09485686141029787 1.636708988673852 0.008132580702272126 0.009237822089558763 931.2087045629778 -2.9690470269342497 0.1291080407317431 NWRDPDQTDGLGLSYLSSHIANVER ddPTM_BT-474_Trastuzumab_2h_R1 3 NWRDPDQTDGLGLSYLSSHIANVER 25 1 P06396-2;A0A0A0MS51;A0A0A0MT01;P06396-4;P06396-3;P06396 P06396-2 GSN Gelsolin 0 ;; 293.55 3.9492999999999997e-63 2235770000.0 705990.0 889520.0 847640.0 934610.0 870820.0 1036580.0 976100.0 906320.0 1235750.0 1119810.0 False True 702189.0282828636 919127.1354738061 966980.344181043 1052931.5301722772 981713.7652454762 964923.6644468539 928882.3139358929 973954.2005997074 931215.9707016385 1048342.7670824255 0.6698086258915871 0.8767429550086647 0.9223894841876794 1.004377159106675 0.9364434954586655 0.920427645179706 0.8860482879287704 0.9290417515926169 0.8882743315845494 1.0 19.999679068183063 4.755354813782157 2.350066560328516 0.9323284184829612 0.5999788951857706 0.8184472850875855 0.03756684698373791 0.24528089368226078 1.5651141198716714 0.009464999559408462 0.16949614408276661 56931.78672867279 -4.755354813782157 -0.3323495232971906 NWTEDMEGGIS(ph)SPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NWTEDMEGGISSPVKK 16 1 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 1 NWTEDMEGGIS(0.5)S(0.5)PVKK;NWTEDMEGGIS(0.5)S(0.5)PVKK 286.57 5.5641e-36 2211520000.0 2643370.0 1767300.0 1566360.0 1373630.0 1385820.0 2384170.0 2335310.0 2175250.0 3652260.0 2328980.0 True False 2629138.3896260154 1826123.512144591 1786889.8729548142 1547531.4171585413 1562295.9626013255 2219357.9396324963 2222342.1335494607 2337578.200695686 2752209.460776663 2180342.502459905 1.205837333657336 0.8375397489542687 0.8195454938564973 0.7097652847718127 0.7165369481348516 1.0178941781525486 1.0192628594095519 1.0721151369834714 1.262283085190316 1.0 21.05612335010071 2.539211119083958 4.785103892113087 1.0829385695946536 0.8463029009550466 0.36411008145483226 0.14466015167027185 0.23905158640499746 11.008363885845055 0.04978718559622736 0.045815853374576276 346.1075866388109 -2.539211119083958 -0.23663566863960706 NWTEDMEGGISS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 2 NWTEDMEGGISSPVK 15 0 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 1 NWTEDMEGGIS(0.249)S(0.751)PVK;NWTEDMEGGIS(0.036)S(0.964)PVK 129.05 7.157100000000001e-05 248370000.0 341880.0 299050.0 250082.0 254190.0 240900.0 368000.0 343800.0 315480.0 469710.0 376140.0 True False 340039.35606643907 309003.6984704572 285291.37184828875 286370.4279373118 271577.1870738335 342561.02617882116 327169.0805564593 339022.71957498003 353956.2642915371 352134.4231703442 0.9656521308112664 0.8775163066661547 0.8101774580279524 0.8132417880622276 0.7712315786362604 0.9728132316479269 0.9291028057151687 0.962765061486132 1.0051737092465725 1.0 18.42576674029076 2.7162292120837663 24.668628263159018 0.967229531435243 0.84524407489457 0.592584451238821 0.05223952970323841 522.2800904838571 576941.5661720765 0.01783961578635466 0.016832427941447344 520.2705126264411 -2.7162292120837663 -0.12198545654067305 NWTEDMEGGISS(ph)PVKK ddPTM_BT-474_Trastuzumab_2h_R1 4 NWTEDMEGGISSPVKK 16 1 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 1 NWTEDMEGGIS(0.193)S(0.807)PVKK;NWTEDMEGGIS(0.078)S(0.922)PVKK;NWTEDMEGGIS(0.084)S(0.916)PVKK;NWTEDMEGGIS(0.014)S(0.986)PVKK 269.85 2.5155e-28 6333090000.0 7021120.0 4557750.0 4369600.0 3930570.0 3991640.0 6341420.0 6578360.0 6095020.0 9704500.0 6241600.0 True False 6983319.07003976 4709451.953531941 4984801.69875594 4428179.758989581 4499951.693696117 5903052.561497004 6260139.59502441 6549861.3422844475 7312956.008637711 5843255.744297394 1.1951075523016408 0.8059636886727122 0.8530863472167475 0.7578274771408342 0.7701103444064986 1.0102334759620897 1.0713444471660967 1.120926693765997 1.251520783729968 1.0 22.47834100304581 2.4157485112619903 2.7121690574567214 1.122902882039897 0.8653881334075686 0.41617721376391603 0.1299373669848045 0.24998311038060858 3.758804274120809 0.04962389271137737 0.040512009235974894 260.46448305392533 -2.4157485112619903 -0.25751474863232837 NYDPQKDK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYDPQKDK 8 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ; 67.113 0.054662 931080000.0 1132030.0 835900.0 815330.0 757030.0 709680.0 1050100.0 1153660.0 1032560.0 1772020.0 1058610.0 False True 1125935.276260358 863722.4261877789 930121.3770245971 852869.9203799664 800053.5413970854 977509.0586695101 1097853.0583908241 1109614.8704334407 1335329.4148514809 991048.603478382 1.1361050026290849 0.8715237811306996 0.9385224637419977 0.860573252801693 0.8072798231984363 0.986338162667955 1.107769139210307 1.1196371868533135 1.3473904409579331 1.0 19.91859628692201 2.2266043660087416 2.4136831531235696 1.1615307469176717 0.9159299412348416 0.459535043980256 0.11368146072232736 0.24570264121766547 2.919039587567513 0.04935366930300005 0.03391578433366594 168.50173073553722 -2.2266043660087416 -0.24560080568283005 NYDTTIHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYDTTIHGK 9 0 J3QRN6;O94832;K7EIG7;J3KRL0 J3QRN6 MYO1D Unconventional myosin-Id 0 ; 114.5 0.0016287 372610000.0 509290.0 525820.0 471560.0 436740.0 446280.0 635280.0 609970.0 519280.0 754890.0 597610.0 False True 506548.03922743816 543321.6008350973 537951.5491270022 492031.23922003893 503111.1126912007 591364.5888882639 580463.4207883175 558031.3104504115 568857.4745077563 559470.0181603375 0.9054069436876732 0.9711362239243135 0.9615377619267378 0.879459529999387 0.8992637609885558 1.0570085432509913 1.0375237312930745 0.997428445380046 1.0167791946712121 1.0 19.09370129409178 2.742106649694948 24.9993905732227 1.020893137064277 0.9256970082659819 0.7246754101166388 0.030302692510451663 182.94528219966784 1289758.4764690865 0.010156066362557736 0.010395027630990074 552.2130295840587 -2.742106649694948 -0.0951961287982952 NYDYYASR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYDYYASR 8 0 O95861-3;O95861-4;O95861 O95861-3 BPNT1 3(2),5-bisphosphate nucleotidase 1 0 ; 101.65 0.012207 573310000.0 289547.0 285248.0 253342.0 240600.0 210673.0 300052.0 294990.0 239977.0 431270.0 316567.0 False True 287988.1111236959 294742.30724394304 289010.35151186073 271059.93533072656 237500.9577932988 279310.1114864337 280720.2067287667 257885.302318515 324989.28722192644 296363.4230333555 0.9717397247476219 0.9945299734602201 0.9751890046138818 0.914620072060036 0.8013841767732863 0.9424581098018886 0.9472161033083081 0.8701657568906207 1.0965904088148863 1.0 18.17700787665331 -0.45717680509050007 6.621625381446979 1.000002782041618 0.9379472187578324 0.035956843012030726 0.07402186237871872 0.0 0.0 0.07078396938817767 0.01668394158456048 0.3489982063245816 0.45717680509050007 -0.062055563283785586 NYEQWQLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NYEQWQLQR 9 0 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UJW8;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 101.65 0.0089381 248380000.0 156530.0 150160.0 158320.0 142300.0 136030.0 177650.0 161850.0 151620.0 199210.0 181860.0 False True 155687.25987211795 155157.98482636324 180610.0798578908 160315.16540965237 153352.61418702168 165369.4736431184 154020.69717295817 162934.65431075956 150117.36477723927 170253.53910182076 0.9144436038948278 0.9113348576769992 1.0608301055631877 0.9416260375872438 0.900730845279572 0.9713129871809512 0.9046548928468707 0.9570118493296982 0.8817283069073885 1.0 17.37732526263937 3.495655163838215 24.88743265256909 0.9337290960084713 0.9644680499350189 0.05001243850245829 0.05059246108621464 2060.7526572318225 2767185.2441938254 0.013123112823068094 0.019931742030895577 3130.798837129832 -3.495655163838215 0.030738953926547574 NYFESTDGLIWVVDSADR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYFESTDGLIWVVDSADR 18 0 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 0 ; 227.41 6.946700000000001e-19 118454000.0 103149.0 108168.0 107942.0 105092.0 107526.0 131333.0 114315.0 111522.0 140729.0 118252.0 False True 102593.65724493121 111768.30649106325 123139.29535131669 118396.63642467439 121218.7987434662 122254.25883462782 108785.14672429232 119844.33793724145 106048.22362198723 110705.0561193694 0.9267296439857999 1.0096043524023635 1.1123186209177283 1.069478130222087 1.0949707537545548 1.1043240762445874 0.9826574371363228 1.0825552340447528 0.9579347803919555 1.0 16.75636158880345 1.2335266236990041 24.999632270938726 0.9789673704940339 1.0511384285594596 0.18705641156581843 0.05709061473321111 215.21737010714958 1068743.7253582368 0.04942436140616261 0.013847594997262158 17.12090130316262 -1.2335266236990041 0.07217105806542568 NYGFVHIEDK ddPTM_BT-474_Trastuzumab_2h_R1 4 NYGFVHIEDK 10 0 Q9BWF3;E9PB51;Q9BQ04;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;E9PLB0;E9PM61;U3KQD5 Q9BWF3 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B 0 ;;; 143.79 3.3354e-05 3296700000.0 8827800.0 6800500.0 5532090.0 5984180.0 5498430.0 8206800.0 6787600.0 6983800.0 12000400.0 8072100.0 False True 8780272.105660783 7026850.531510947 6310960.186211731 6741776.574428206 6198622.468752086 7639483.232729211 6459257.856849987 7504966.619017835 9043062.21712153 7556931.667127495 1.1618832209181928 0.9298549783211102 0.8351220394997463 0.8921314723216042 0.8202565196819197 1.010923952900198 0.8547460982011565 0.9931235254732146 1.1966579314801369 1.0 22.849369146736777 1.4577967138271442 5.825114512299442 1.0995927383725561 0.9235985019856914 0.2924566743739442 0.10400219366849561 0.18812186485803686 14.242418096009624 0.06271184420991079 0.025631233561252697 28.694371308440672 -1.4577967138271442 -0.17599423638686473 NYGS(ph)PLISGSTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 NYGS(0.541)PLIS(0.457)GS(0.002)TPK 122.13 0.00025031 437770000.0 402780.0 297150.0 281040.0 281690.0 264640.0 380120.0 361360.0 326880.0 524730.0 411650.0 True False 400611.47723306465 307040.4581190318 320607.9891565294 317351.9251176738 298340.33535582904 353843.199106232 343879.63627074537 351273.4454630068 395417.32252176426 385378.1445687035 1.0395282734089906 0.7967251450199818 0.8319309065005187 0.8234818958735677 0.7741495971177013 0.9181714222591323 0.8923174318969197 0.911503286872002 1.0260502005485965 1.0 18.55591523077099 1.4965883842349357 1.3637541285977213 1.0169667354804588 0.8544394044650181 0.37896950466008716 0.07173099445257984 0.3937182919101287 1.4010089917235116 0.06192325682981568 0.020878602305092565 31.375335916210787 -1.4965883842349357 -0.1625273310154407 NYGSPLIS(ph)GSTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 NYGS(0.021)PLIS(0.977)GS(0.001)TPK 161.04 4.4924e-05 344370000.0 471240.0 410090.0 313400.0 376500.0 360440.0 499530.0 473680.0 446040.0 710170.0 510700.0 True False 468702.89619968575 423739.5977453605 357523.99587836687 424164.86139658577 406339.89750474226 464998.66686713754 450766.288766678 479325.7697452267 535158.1192904575 478106.6887677326 0.9803311838362185 0.8862866964641359 0.7477912446693554 0.8871761708455158 0.8498937727728484 0.9725834793602668 0.9428152739893235 1.0025498095009635 1.119327823398097 1.0 18.866973063733663 2.110681927580075 1.1088134577086348 1.0507615218767883 0.8659055995591639 0.5486891970012535 0.06481822693558091 0.3799715453879447 0.8734907951964915 0.04814966148671501 0.02438796024941472 129.02739452791147 -2.110681927580075 -0.18485592231762438 NYGSPLISGS(ph)TPK ddPTM_BT-474_Trastuzumab_2h_R1 1 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 NYGS(0.091)PLIS(0.121)GS(0.633)T(0.154)PK 86.539 0.0066893000000000005 0.0 88416.0 68517.0 62328.0 63149.0 61506.0 83022.0 73541.0 69237.0 122280.0 80163.0 True False 87939.97807994102 70797.5469255988 71103.24063531215 71143.65692518726 69338.42452537638 77282.88455276655 69983.54087609831 74403.81651836217 92145.73246805294 75046.92870900275 1.1717998270246548 0.9433770061413028 0.9474503734991955 0.947988920386728 0.9239342064781717 1.0297941019336554 0.9325303790573773 0.9914305328451979 1.227841486030047 1.0 16.195505410396645 1.3874622276106165 11.05994006691639 1.1134956905470281 0.9786681100147337 0.25879683867877545 0.08611466542804154 0.4970141484182992 57.844525657026495 0.053123403182727624 0.01948041324261616 24.404068065264752 -1.3874622276106165 -0.13482758053229438 NYGYNPS(ph)PVKPEGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 NYGYNPSPVKPEGLR 15 1 E9PRF4;Q15047-3;Q15047 E9PRF4 SETDB1 Histone-lysine N-methyltransferase SETDB1 1 NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR 175.77 5.0708e-07 2543140000.0 2221990.0 1363060.0 1238890.0 1138370.0 1043980.0 2009400.0 1945300.0 1702090.0 3000710.0 1977450.0 True False 2210027.0527262967 1408428.6281128293 1413314.943375079 1282487.5252802954 1176924.6648457467 1870494.9076188134 1851198.4072323474 1829108.5988378935 2261225.227953964 1851247.4480198785 1.193804239995131 0.7607997675401553 0.7634392392474498 0.6927693683802578 0.6357468128340178 1.0103970215432423 0.9999735093287591 0.9880411183250164 1.2214602809433195 1.0 20.820066316056877 2.5994399365913003 7.305818107953908 1.0380992764964871 0.7979744274358537 0.36841524420255534 0.1535466562279029 0.29313347534252376 16.30061298915672 0.050391208029571505 0.04741369553772214 397.5941049661099 -2.5994399365913003 -0.24012484906063347 NYILDQTNVYGS(ph)AQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYILDQTNVYGSAQR 15 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 NYILDQTNVYGS(1)AQR;NYILDQTNVYGS(1)AQR 289.59 7.437899999999998e-44 283170000.0 381340.0 312300.0 289730.0 326090.0 296900.0 322890.0 265940.0 324960.0 449010.0 335090.0 True False 379286.9078108571 322694.7167106634 330521.46562169486 367372.9605652392 334708.4551358283 300569.3743013032 253075.46621054347 349210.1653134445 338357.5019257474 313704.26931501785 1.2090588012685985 1.0286589896123393 1.0536084393859153 1.171080525513435 1.066955371269488 0.9581296899707642 0.806732617197531 1.1131826993491507 1.0785874947273129 1.0 18.259045637911257 2.9347721003958767 5.3815885144419 0.993271737266856 1.106679318235882 0.29655817145820795 0.09018617363325132 0.31631056066665 17.996633988297972 0.02901449953921872 0.031288486570240644 860.5420571518785 -2.9347721003958767 0.11340758096902603 NYIVEDGDIIFFK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYIVEDGDIIFFK 13 0 J3KQ32;Q9NTK5;Q9NTK5-2 J3KQ32 OLA1 Obg-like ATPase 1 0 ; 176.8 3.719e-05 70531000.0 176350.0 170453.0 165999.0 157560.0 158665.0 199425.0 186463.0 176743.0 258720.0 205444.0 False True 175400.55119432704 176126.4250639856 189370.21631082668 177507.0798450093 178870.04726886557 185639.21914595488 177443.0723321671 189932.460142769 194961.9226703846 192332.38803054235 0.9119657536123009 0.9157398130782671 0.9845986848598517 0.9229182960948897 0.9300048166638529 0.9651999907393413 0.922585499765069 0.9875219773832775 1.0136718244221286 1.0 17.553242201839446 1.6011930285610128 4.147917032046277 1.005281521264831 0.9376764324037369 0.6502479100458144 0.0218108326618317 0.10454997081876972 4.090853284147407 0.012736315977495768 0.005648522022378926 39.920229425981645 -1.6011930285610128 -0.06760508886109406 NYKGYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYKGYEK 7 1 Q14847;Q14847-2;C9J9W2;F6S2S5;K7ESD6 Q14847 LASP1 LIM and SH3 domain protein 1 0 ; 107.82 0.0067416 2001820000.0 1290230.0 1419210.0 1269140.0 1461660.0 1319640.0 1741970.0 1877090.0 1565980.0 2571200.0 1662240.0 False True 1283283.5450380284 1466447.546919439 1447823.8804373648 1646706.0061326234 1487688.3318809182 1621551.714056308 1786287.9855198495 1682841.3794853177 1937562.21231483 1556154.420084737 0.8246505157040585 0.9423534888263767 0.9303857391983803 1.058189331906377 0.9560030243013475 1.0420249386098905 1.147886072529088 1.0814102750764814 1.2450963653140055 1.0 20.56955379805227 3.941117106416928 0.503495388762867 1.12574227364388 0.7823638014255835 0.6062923544118101 0.0713697677999092 1.4029937970269524 0.4806724709453888 0.047988156557017436 0.2633484251241822 8732.067946659887 -3.941117106416928 -0.34337847221829654 NYLPAINGIVFLVDCADHER ddPTM_BT-474_Trastuzumab_2h_R1 2 NYLPAINGIVFLVDCADHER 20 0 Q9Y6B6;D6RD69;D6RDB2;Q9H029;D6R9R5 Q9Y6B6 SAR1B;DKFZp434B2017 GTP-binding protein SAR1b 0 ; 155.93 2.4277000000000003e-08 242690000.0 339740.0 296099.0 224084.0 265047.0 217257.0 303954.0 208779.0 206704.0 374030.0 289575.0 False True 337910.87758866284 305954.47621937474 255633.0794269559 298601.9230241192 244923.391166873 282942.37541075394 198679.56215676884 222129.3021016442 281855.31824522244 271094.0755823695 1.2464709044738664 1.1285915251453482 0.9429681518410168 1.101469747661054 0.9034627209787741 1.0437054915454411 0.7328805018330319 0.8193808795875076 1.0396956024942094 1.0 18.04843405968426 5.532892997978711 0.5035565301693312 0.8902410744924515 1.896091927567954 0.4641755006171602 0.10542906502535493 7.490269394809685 0.7994525406792244 0.059539559710843785 5.275651219744856 341108.85843774304 -5.532892997978711 1.0058508530755024 NYLPAINGIVFLVDCADHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYLPAINGIVFLVDCADHSR 20 0 Q9NR31;Q5SQT8;Q9NR31-2 Q9NR31 SAR1A GTP-binding protein SAR1a 0 ; 162.76 2.0623e-11 908500000.0 458470.0 408000.0 322600.0 359110.0 283730.0 421900.0 276200.0 283320.0 509480.0 400990.0 False True 456001.64846080565 421580.0333587916 368019.275910533 404573.2891796225 319861.33370053436 392735.0460457734 262839.1508135372 304462.77706980903 383925.4806822337 375398.47489518917 1.2147136415195101 1.1230201014441954 0.9803430235386107 1.0777169227780665 0.8520581597723307 1.0461817836511578 0.7001604119114271 0.8110389291134299 1.0227145456289488 1.0 18.518063263482485 4.300171313082847 0.6589914380252735 0.872987234713736 1.3143626281079648 0.4430491598736471 0.10938899937866678 1.6852514481839078 0.8065936810540626 0.05101964074669328 0.5150365341863776 19960.49527282099 -4.300171313082847 0.4413753933942288 NYNECIR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYNECIR 7 0 Q9H832-2;Q9H832;D6RB11 Q9H832-2 UBE2Z Ubiquitin-conjugating enzyme E2 Z 0 ; 149.4 0.0046968 1403040000.0 798420.0 832690.0 817430.0 812020.0 760290.0 842180.0 856980.0 839500.0 1109500.0 885150.0 False True 794121.3954328017 860405.5832782652 932517.0387710697 914821.6487417133 857108.4249081144 783962.0788784764 815524.6034184841 902147.7528946233 836078.5915383109 828658.969184958 0.9583211248094903 1.0383108314443663 1.1253327043430943 1.1039784552642953 1.034331922758452 0.9460611759860102 0.9841498538543637 1.088683989967485 1.0089537706454206 1.0 19.66041896374209 3.0041155749730413 24.95488205806342 1.013093710570859 1.0612364586939371 0.16084000375781626 0.053184527395984914 245.29548140974555 1487328.922644613 0.016900424580189408 0.02011690474515094 1009.5215054170383 -3.0041155749730413 0.04814274812307806 NYQQNYQNS(ph)ESGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 NYQQNYQNSESGEK 14 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNYQNS(1)ESGEK;NYQQNYQNS(1)ESGEK;NYQQNYQNS(1)ESGEK 354.61 4.876999999999999e-82 1293680000.0 2055230.0 1131480.0 1146250.0 996750.0 1110870.0 1621190.0 1318860.0 1431800.0 2127570.0 1495010.0 True False 2044164.870037518 1169140.6278058975 1307632.0366163931 1122938.4478009208 1252332.7098576562 1509120.9511707693 1255061.7032655382 1538648.1865330823 1603258.881477391 1399597.1818575459 1.4605380008871565 0.8353407987391155 0.9342917044752144 0.8023297434127129 0.8947808170030463 1.0782537795395268 0.8967306590313506 1.0993507321092115 1.145514511074926 1.0 20.416580234095857 2.7224368898883 24.326517705525962 1.0418345455119005 0.9641002952526916 0.018437207216888463 0.18250538068043798 2272.3547859811883 3428386.4451450063 0.05815817330144273 0.05500697333119051 527.7605089504865 -2.7224368898883 -0.07773425025920888 NYQQNYQNS(ph)ESGEKNEGSESAPEGQAQQR ddPTM_BT-474_Trastuzumab_2h_R1 5 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNYQNS(0.999)ES(0.001)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.998)ES(0.002)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.987)ES(0.013)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.995)ES(0.005)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.999)ES(0.001)GEKNEGSESAPEGQAQQR 268.23 5.226199999999998e-59 14441820000.0 3403170.0 2051873.0 2092197.0 2089031.0 2194179.0 3116410.0 2723964.0 2770077.0 4143020.0 3055230.0 True False 3384847.7108477294 2120168.352421579 2386760.1518976763 2353502.110406824 2473594.6897321576 2900979.9119400536 2592195.4547670013 2976794.2119059945 3122028.234623749 2860242.6056859954 1.1834128000606836 0.7412547272062894 0.8344607367056683 0.8228330372144653 0.8648198879405529 1.0142426052157516 0.9062851695215881 1.0407488532575178 1.0915256728283604 1.0 21.44770609086487 2.1211204807997017 1.1756044911175787 1.0486136493314608 0.8791133270338801 0.20567593469069922 0.11676223549040811 0.6729261143888121 1.747605126077083 0.07992446576631784 0.040877213311451686 132.16622352935653 -2.1211204807997017 -0.16950032229758072 NYQQNYQNSES(ph)GEKNEGSESAPEGQAQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNYQNS(0.11)ES(0.872)GEKNEGS(0.017)ES(0.001)APEGQAQQR 293.19 6.104599999999997e-81 6222400000.0 349560.0 386560.0 331100.0 318270.0 390590.0 469340.0 513240.0 461290.0 707310.0 430430.0 True False 347678.00779976713 399426.41591954563 377716.0020272091 358562.94936704205 440329.32129169133 436895.6305075212 488412.62043280166 495713.80218315736 533002.9279684209 402959.58889033715 0.8628111041040035 0.9912319421892376 0.9373545448250943 0.8898235933644022 1.0927381639043812 1.084216984910662 1.2120635267119055 1.2301824199003306 1.3227205473288146 1.0 18.620275638671977 2.817295415007316 1.3662577665091813 1.2121614100536946 0.9240883077108689 0.635083734416577 0.08835456175754544 0.23751995352334038 0.9070260244633006 0.03523627769019845 0.035913371757521274 656.5917400822786 -2.817295415007316 -0.2880731023428257 NYQQNYQNSESGEKNEGS(ph)ESAPEGQAQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNYQNSES(0.002)GEKNEGS(0.948)ES(0.05)APEGQAQQR;NYQQNYQNSESGEKNEGS(0.975)ES(0.025)APEGQAQQR 436.95 1.499099999999999e-197 1302980000.0 543587.0 351969.0 371371.0 365190.0 364079.0 521739.0 536359.0 460554.0 756442.0 560867.0 True False 540660.3879901937 363684.0753952462 423656.80878540146 411423.01655622583 410442.3025846999 485672.4109714991 510413.26607964584 494922.8781258254 570027.0049034907 525071.9878776023 1.029688119862576 0.692636598012582 0.8068547143371103 0.7835554477382084 0.7816876772340341 0.9249634758362171 0.9720824531942589 0.9425809975625572 1.0856168640943908 1.0 19.002155705661817 2.514045726752709 2.5992657286540553 0.9901114074381552 0.8091458948801328 0.4865315310251159 0.08720328090378368 0.2383744389091914 3.229787432554292 0.031094691182665456 0.02700505993076063 326.62222033031946 -2.514045726752709 -0.1809655125580224 NYQQNYQNSESGEKNEGSESAPEGQAQQR ddPTM_BT-474_Trastuzumab_2h_R1 4 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ;;; 408.7 8.798299999999994e-175 3038350000.0 1135110.0 879078.0 879506.0 869580.0 909042.0 1122659.0 1098548.0 1071644.0 1543150.0 1173980.0 False True 1128998.6938825767 908337.5798161274 1003332.7999968043 979668.7388399531 1024803.1103859342 1045052.2257850235 1045407.0363791088 1151615.5169779689 1162861.3596506026 1099055.591305154 1.0272443931083273 0.8264710056544597 0.9129045044985609 0.891373235885706 0.9324397405311927 0.9508638453347021 0.9511866775889505 1.04782280904499 1.0580550873406485 1.0 20.067832930381016 1.991409793038501 1.6770450154157397 1.0425023276337113 0.9138068760707468 0.4926919783125706 0.049922719359381904 0.2732220986746458 1.4329628616771755 0.030109843560855235 0.014727316384791779 98.04146520236594 -1.991409793038501 -0.12869545156296447 NYS(ph)SPPPCHLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYSSPPPCHLSR 12 0 Q12986;Q12986-2;Q12986-3 Q12986 NFX1 Transcriptional repressor NF-X1 1 NYS(0.752)S(0.248)PPPCHLSR;NY(0.001)S(0.599)S(0.4)PPPCHLSR 103.88 0.0014163 609130000.0 284910.0 434170.0 525270.0 519880.0 472390.0 502130.0 504280.0 464540.0 497080.0 525710.0 True False 283376.0762164769 448621.08598869236 599223.450271314 585696.7546955033 532546.0664251067 467418.9349868781 479886.04986332625 499206.33368632296 374581.29453074693 492158.73771702487 0.5757818656862065 0.9115373793213741 1.2175410174589805 1.190056601275379 1.0820615903223143 0.9497320664367208 0.9750635579272088 1.0143197619572697 0.7610985355422439 1.0 18.908764182646564 4.676073591611337 3.567111509961279 1.0278323025033176 0.5500328574025568 0.5473948036836995 0.1218369950761612 0.18624647898773958 4.0548580832242305 0.031021939005585784 0.2111677968063394 47432.235282285306 -4.676073591611337 -0.4777994451007608 NYSEVIEVDES(ph)DVEEDIFPTTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYSEVIEVDESDVEEDIFPTTSK 23 0 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 NYSEVIEVDES(0.999)DVEEDIFPTTSK;NYSEVIEVDES(1)DVEEDIFPTTSK 98.019 0.0020053 137864000.0 430330.0 364970.0 319200.0 294770.0 319890.0 496990.0 395360.0 401440.0 587780.0 423460.0 True False 428013.1510941578 377117.80582097586 364140.58546386345 332087.8517765507 360626.0953634223 462634.2510886202 376234.92637813237 431397.49127101596 442929.49484847963 396434.42025765433 1.0796568845257672 0.9512741239165761 0.9185392762495189 0.8376867264974547 0.9096740266121213 1.1669881005487381 0.9490470734947947 1.0881938328933145 1.1172831424693315 1.0 18.59672270381085 2.7648147474183826 24.951370675324622 1.0615884363974335 0.9332218351742785 0.3809580404056446 0.07940005231607411 778.6272941374932 739989.5165425336 0.024348333183842455 0.02581872289714461 581.8549688698545 -2.7648147474183826 -0.12836660122315502 NYSS(ph)PPPCHLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 NYSSPPPCHLSR 12 0 Q12986;Q12986-2;Q12986-3 Q12986 NFX1 Transcriptional repressor NF-X1 1 NYS(0.284)S(0.716)PPPCHLSR;NYS(0.288)S(0.712)PPPCHLSR 114.27 0.00069266 592110000.0 305890.0 483830.0 555770.0 568880.0 524850.0 558910.0 518780.0 498260.0 555380.0 544440.0 True False 304243.1222275737 499933.9890685888 634017.5851605609 640900.149671419 591686.5364703255 520273.86723262136 493684.62946794636 535442.6913130134 418514.04071072274 509693.3730814654 0.596914023794745 0.9808524408432583 1.2439196164695365 1.2574229596055246 1.160867626928622 1.020758547609103 0.9685914228848325 1.0505192329181656 0.8211094411145713 1.0 18.959270070205786 -0.6678110993816992 7.430831151662151 0.9999943877348079 1.0290520095750242 0.0 0.18766683005013768 0.0 0.0 0.18483023782044158 0.04356490484371886 0.2148764897135251 0.6678110993816992 0.02905762184021632 NYTEEEDRFLICMLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYTEEEDRFLICMLHK 16 1 O60264;A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 O60264 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 0 ; 164.41 4.4387e-09 438580000.0 201773.0 229545.0 237982.0 208264.0 218925.0 273850.0 279090.0 247190.0 361440.0 267590.0 False True 200686.67658708777 237185.26656211738 271487.79702337424 234630.201046211 246803.80107986287 254919.39407356025 265589.35047266516 265636.57300538645 272367.955047866 250512.17710467475 0.801105474817826 0.9468013463593475 1.0837309393943553 0.9366019798238089 0.9851968232934946 1.0175928253062285 1.060185391154421 1.0603738950956947 1.0872443734903112 1.0 17.934521207284615 4.622846616384369 2.8548860048964437 1.0291032828389215 0.786566813281838 0.7027972454298117 0.045213055868043056 0.1826913119173643 2.334923045898672 0.011797765779763233 0.08873471267975311 41961.07601817736 -4.622846616384369 -0.24253646955708352 NYVPPKGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYVPPKGDK 9 1 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ; 121.6 0.00055563 1409530000.0 2064580.0 1477580.0 1138790.0 1208840.0 1113480.0 1888390.0 1436200.0 1483400.0 2710300.0 1697060.0 False True 2053464.5306764005 1526760.3570840294 1299121.733459877 1361879.0200548419 1255275.0778869728 1757850.0440919104 1366725.5191832068 1594098.8405525712 2042382.8811593377 1588752.1778738368 1.2925014733414681 0.9609808114486624 0.8176994194264077 0.8572004111285562 0.790101247613619 1.1064343883036374 0.8602509178066026 1.0033653220138397 1.2855264084626317 1.0 20.599462672213342 1.4325398285423852 7.991704303254835 1.1449567551745379 0.9455030609896244 0.18240989845210698 0.1558517430381547 0.32583418694638383 44.43862511472424 0.09538404368605106 0.03807160661942655 27.073214772207916 -1.4325398285423852 -0.19945369418491343 NYVPPKGDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 NYVPPKGDKK 10 2 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ; 84.479 0.0083765 1971410000.0 2247100.0 1749410.0 1263810.0 1515690.0 1351250.0 2581210.0 2012770.0 1995820.0 4322200.0 2480000.0 False True 2235001.863276282 1807638.054309322 1441743.462766556 1707576.1985928037 1523323.6780137683 2402777.028214768 1915404.6255719159 2144758.2229686077 3257051.7245127405 2321724.276765177 0.9626474106521709 0.7785756786020589 0.6209796215661384 0.7354775998517548 0.6561173922582193 1.0349105844568764 0.8249922890243538 0.9237781783273881 1.4028589687018052 1.0 21.146765220182846 1.4444922319690665 4.2887329598475095 1.2013333638065768 0.7991205642302415 0.5218909723401371 0.1498990744332642 0.15163725758712018 5.21244143426935 0.10279932687089806 0.038133659608133086 27.82865597536586 -1.4444922319690665 -0.4022127995763354 NYYEQWGK ddPTM_BT-474_Trastuzumab_2h_R1 8 NYYEQWGK 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;; 246.64 9.8336e-09 62570810000.0 12647290.0 11306640.0 10714900.0 10238170.0 10046700.0 13048550.0 13291680.0 11947740.0 15272750.0 12102130.0 False True 12579198.395886026 11682974.677391786 12223464.784419645 11534321.272256784 11326087.693543717 12146534.451482752 12648710.659251533 12839341.0281944 11508985.406865025 11329761.702245234 1.1102791679540083 1.0311756755728194 1.078881013181178 1.018055063768112 0.9996757205669393 1.0720909027659125 1.1164145364809326 1.133240165647086 1.0158188415016949 1.0 23.43361418162729 2.4885713746970106 24.243892495398295 1.0860146121521448 1.0457039136452353 0.0 0.04883152115735596 774.7696095540684 1640462.677057783 0.016193417827313424 0.014466485946216901 308.0146510631349 -2.4885713746970106 -0.04031069850690949 NYYGYQGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 NYYGYQGYR 9 0 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;; 133.12 0.00066537 480120000.0 246070.0 250880.0 210809.0 210888.0 165182.0 226389.0 207105.0 175985.0 356449.0 220628.0 False True 244745.18646094736 259230.38913983718 240489.07481532454 237586.39917716643 186216.9485895802 210739.2612923834 197086.53993206943 189117.89433372274 268606.92012189195 206547.33215086616 1.1849351134788841 1.255065298788223 1.1643291264574005 1.1502758070175834 0.9015703405627323 1.0202952470887174 0.9541955244820767 0.9156152847115323 1.3004618230832257 1.0 17.65611290031677 3.399382684206001 5.911875396760398 1.0011416588373145 1.1992206843905302 0.3889736728225279 0.10682050463954935 0.19106438454511152 11.096515478756125 0.029319687903832898 0.039989243024418614 2508.3185168674495 -3.399382684206001 0.19807902555321566 PAAPPRPLDRES(ph)PGVENK ddPTM_BT-474_Trastuzumab_2h_R1 1 PAAPPRPLDRESPGVENK 18 2 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 PAAPPRPLDRES(1)PGVENK 179.42 4.3712000000000003e-14 356330000.0 358800.0 211500.0 218650.0 197980.0 204380.0 330050.0 292420.0 283240.0 471810.0 311770.0 True False 356868.2606664272 218539.64964555012 249434.01946013025 223044.24770065304 230406.5815448318 307234.42035413027 278274.5274471203 304376.80706357746 355538.74743009516 291872.57168027415 1.2226851554155327 0.7487502110508174 0.8545990396568255 0.7641836518471571 0.7894081318378419 1.0526320393362756 0.9534110240134193 1.0428414198405762 1.2181300400489938 1.0 18.154979116383224 2.198511318339591 1.3521115422597276 1.088593196135484 0.8687069358850152 0.25619360728001894 0.14319794797694627 0.5602216095251803 1.9769260017231205 0.08762768554760829 0.04898854654539222 157.946977045886 -2.198511318339591 -0.21988626025046876 PAFSQDTPSDIIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 PAFSQDTPSDIIAK 14 0 Q9P2D3;Q9P2D3-3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 0 61.375 0.085487 304260000.0 318070.0 727660.0 661780.0 756690.0 735720.0 545500.0 523650.0 515180.0 302770.0 612660.0 False True 316357.5464608993 751879.7232202406 754952.8717051226 852486.8764148263 829409.5810459135 507790.8689688776 498319.04896273994 553625.3476310333 228156.39041014368 573559.514275385 0.551568823438618 1.3109009693094171 1.3162589982643802 1.486309363191069 1.4460741394792493 0.8853324830822532 0.8688183816326346 0.9652448156674102 0.3977902636632024 1.0 19.12958366685962 2.621615797907836 6.131757951147278 0.8313579548421302 1.24599958588141 0.3244137789761149 0.28735707850257297 0.28773515819800405 13.490732945066407 0.09428070370568511 0.08864400621969196 418.423239865705 -2.621615797907836 0.41464163103927976 PANKQEDEVMR ddPTM_BT-474_Trastuzumab_2h_R1 3 PANKQEDEVMR 11 1 O15145 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 0 ;; 148.18 3.1874e-05 1135390000.0 1262330.0 913080.0 859530.0 841110.0 870060.0 1227140.0 1198350.0 1011070.0 1876740.0 1133230.0 False True 1255533.7555380478 943471.3158314843 980544.3528313112 947594.4397590494 980856.9837503508 1142310.7001768434 1140381.2323584459 1086521.177509431 1414242.57402759 1060906.2911929844 1.1834539638050459 0.8893069290507788 0.9242516148421491 0.8931933457510971 0.9245462977200196 1.0767310078747108 1.074912310187257 1.0241443438775755 1.3330513597362879 1.0 20.01686579937352 2.660859349410823 4.999206843558917 1.0964370747149652 0.9529788135890565 0.2633413793605539 0.11556065266138828 0.30635069282370675 13.846239894667788 0.037087754960507084 0.03504209116969484 457.993536929601 -2.660859349410823 -0.14345826112590876 PAPPKPEPK ddPTM_BT-474_Trastuzumab_2h_R1 3 PAPPKPEPK 9 1 Q15651;A0A087WZE9;Q15651-2;P05204 Q15651;P05204 HMGN3;HMGN2 High mobility group nucleosome-binding domain-containing protein 3;Non-histone chromosomal protein HMG-17 0 ;; 84.17 0.014294 1059910000.0 1990890.0 1327310.0 1379820.0 1013900.0 1150830.0 2062470.0 1792930.0 1651650.0 2989060.0 1615730.0 False True 1980171.269448671 1371488.7109741617 1574086.6623895587 1142259.6360424908 1297381.3789961787 1919896.3034321542 1706199.1262422723 1774904.5099087597 2252446.2143519656 1512612.728103951 1.3091065760968448 0.9067018183122872 1.0406408944890109 0.755156699940179 0.8577088866774489 1.2692583288246755 1.1279814684496146 1.1734031301809746 1.4891096527895744 1.0 20.528611233176708 2.732033234146607 24.85307105437325 1.2113743269055288 0.9616913339879406 0.3078270555602133 0.17804098267984095 585.8815489978883 2230743.846012552 0.056219620521252595 0.05418717504511144 539.5519098488096 -2.732033234146607 -0.24968299291758822 PAQPQEHPFASSR ddPTM_BT-474_Trastuzumab_2h_R1 5 PAQPQEHPFASSR 13 0 A0A2R8YFH5;Q15437;Q5QPE2 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ;;;; 157.2 3.9948e-05 1947290000.0 1390500.0 1375870.0 1377690.0 1280680.0 1334180.0 1540080.0 1540780.0 1398310.0 2037650.0 1573240.0 False True 1383013.7024990749 1421665.0012190202 1571656.776903852 1442813.9566889217 1504079.9146955854 1433617.894558367 1466246.5850488124 1502658.9926743072 1535498.46061112 1472834.476281473 0.9390150249543504 0.9652578236818284 1.0670966780135944 0.9796171802901129 1.0212144941724879 0.9733733950728003 0.9955270661172373 1.0202497408046378 1.0425465219200039 1.0 20.49016387229394 4.462494451128699 24.985351033875222 1.0109171880507013 0.9455757031709642 0.46093325776587335 0.026717019166640054 161.0149641175657 275044.2304854431 0.006253029589780486 0.01713809487101047 29006.441376562234 -4.462494451128699 -0.06534148487973712 PAS(ph)PASNVVVLPSGSTVYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 PASPASNVVVLPSGSTVYVK 20 0 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 PAS(1)PASNVVVLPSGSTVYVK 124.35 2.8375e-05 40064000.0 137290.0 96506.0 93377.0 93654.0 88361.0 112300.0 109890.0 101840.0 152190.0 115120.0 True False 136550.84589435306 99718.14387089103 106523.66995256624 105510.58679743903 99613.24959332084 104536.96532576525 104574.20087943373 109439.81793304168 114684.8137415193 107772.94304080952 1.2670234480155789 0.9252613973168716 0.9884082864122006 0.9790081241215263 0.9242881077823131 0.9699741175870188 0.9703196176041649 1.0154665433196992 1.0641336360100375 1.0 16.717635501874184 4.745475711738353 24.994244058303316 0.981364819874227 1.267023579494009 0.829200263107976 0.03882413528559034 323.7021154964515 1169974.5410671367 0.009558879656225976 0.09540859732580757 55651.35099306941 -4.745475711738353 0.28565875961978204 PAS(ph)PDRFAVSAEAENK ddPTM_BT-474_Trastuzumab_2h_R1 3 PASPDRFAVSAEAENK 16 1 O15037;G3V331 O15037 KHNYN Protein KHNYN 1 PAS(1)PDRFAVSAEAENK;PAS(1)PDRFAVSAEAENK;PAS(1)PDRFAVSAEAENK 279.77 1.198e-35 1282170000.0 1724560.0 1109160.0 958520.0 860680.0 905160.0 1535900.0 1478600.0 1244360.0 2221240.0 1344500.0 True False 1715275.1605766278 1146077.7200986217 1093471.2843948058 969641.999752491 1020426.7606963506 1429726.8481197027 1407074.46919948 1337220.461932048 1673845.1650910822 1258692.8589156396 1.362743220815865 0.9105300884013631 0.8687355907753607 0.7703563207531303 0.8107035433373678 1.135882227338136 1.1178854787590284 1.062388216839539 1.3298281254515858 1.0 20.263494854781484 2.715805888878369 23.563201263839428 1.1261528735846298 0.9288237962130694 0.22261870454490973 0.17114986706722363 574.1815764557111 594580.5926400317 0.05605758426212045 0.05289594684362072 519.7636324201634 -2.715805888878369 -0.19732907737156036 PAS(ph)PEPELLPEADSK ddPTM_BT-474_Trastuzumab_2h_R1 4 PASPEPELLPEADSK 15 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 PAS(1)PEPELLPEADSK;PAS(1)PEPELLPEADSK;PAS(1)PEPELLPEADSK;PAS(1)PEPELLPEADSK 283.1 7.5504999999999974e-34 852860000.0 1012660.0 789800.0 682971.0 601601.0 676758.0 952290.0 937590.0 887500.0 1418440.0 819380.0 True False 1007207.9510771018 816088.0155558188 779127.3803096492 677763.6249164606 762939.1198410682 886460.433749536 892235.1897583784 953729.7566336846 1068884.468122219 767086.4668934887 1.3130305311682084 1.0638800849411076 1.0156969441331996 0.8835557061268939 0.9945933773682435 1.1556199620356784 1.163148130316666 1.2433145385761468 1.3934341358555546 1.0 19.54902968362193 2.3845324484107633 2.285375076700778 1.2268462522727097 1.0449409597486954 0.19390003292427083 0.13626819332011447 0.42380774647825004 4.534199234774122 0.05684434441339926 0.0440948299122234 242.39990674293426 -2.3845324484107633 -0.18190529252401433 PAS(ph)PSLQLLPWR ddPTM_BT-474_Trastuzumab_2h_R1 5 PASPSLQLLPWR 12 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 PAS(0.973)PS(0.027)LQLLPWR;PAS(0.929)PS(0.071)LQLLPWR;PAS(0.5)PS(0.5)LQLLPWR;PAS(0.999)PS(0.001)LQLLPWR;PAS(0.996)PS(0.004)LQLLPWR 179.5 2.1646e-05 1859781000.0 1080581.0 843560.0 733561.0 738414.0 663239.0 841090.0 947483.0 795886.0 1138695.0 894495.0 True False 1074763.271959835 871637.3846572108 836840.0125734863 831897.1366887075 747698.5553244592 782947.4280128933 901649.6275534501 855279.0547472188 858078.8749812683 837407.5632843024 1.2834410854191791 1.0408759400723102 0.9993222527050148 0.9934196598679107 0.8928729427663568 0.9349657948420993 1.0767154096592955 1.0213414497867976 1.0246848877455719 1.0 19.67557042268398 4.765260045787767 2.612266771887099 0.994077784779 1.3545897290907334 0.7709770329600093 0.04726551749792556 0.2750882485367268 2.3034839542051997 0.013062484283966816 0.2234852961774385 58245.187248491275 -4.765260045787767 0.3605119443117334 PASESPHHHTAPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 PASESPHHHTAPAK 14 0 C9JMA6;P0DN79;P35520;P35520-2 C9JMA6 CBS Cystathionine beta-synthase 0 51.875 0.093131 8625300.0 14980.0 17470.0 17953.0 14898.0 13542.0 19651.0 19516.0 4704.7 26345.0 16558.0 False True 14899.349344434466 18051.478389161988 20480.626349726605 16784.08527247364 15266.493430277493 18292.572623478292 18571.93652164008 5055.788603982532 19852.627754913745 15501.254263982986 0.9611705666329827 1.1645172759409812 1.3212238184695249 1.0827565941854975 0.98485536526867 1.1800704841014644 1.19809250305582 0.3261535175079095 1.280711058397457 1.0 13.920097333579204 PASHSHAHQHSPIS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 PASHSHAHQHSPISPR 16 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 PASHSHAHQHS(0.019)PIS(0.981)PR;PASHSHAHQHS(0.021)PIS(0.979)PR;PASHSHAHQHS(0.005)PIS(0.995)PR 107.45 0.0018833 168416000.0 83568.0 87831.0 104180.0 99395.0 103706.0 130049.0 123790.0 30513.0 133421.0 65873.0 True False 83118.07917327761 90754.40174003938 118847.63845120702 111978.3968088011 116912.34438637999 121059.01873241713 117801.80477627729 32790.0350018745 100541.18229980438 61668.928743287324 1.347811302500127 1.4716390180511774 1.9271883081663488 1.8157992864597956 1.8958063123336795 1.9630472135547583 1.9102294652572516 0.531710792940338 1.6303377462308895 1.0 15.912256164892941 1.7564338926826655 24.99999999986735 1.0238811039108515 1.7718486125481823 0.517386356004533 0.31267539506654646 5.2220099394601025 7311.826458707856 0.14193328914618938 0.07871038021242571 57.073419369985906 -1.7564338926826655 0.7479675086373307 PASPS(ph)LQLLPWR ddPTM_BT-474_Trastuzumab_2h_R1 1 PASPSLQLLPWR 12 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 PAS(0.307)PS(0.693)LQLLPWR 153.81 7.4436e-05 491140000.0 166890.0 126640.0 109840.0 114120.0 97660.0 125680.0 138630.0 125230.0 160350.0 132310.0 True False 165991.482783222 130855.13584450344 125304.5172536049 128567.58029901274 110096.42212382957 116992.03741889735 131923.93728197215 134575.29850505493 120833.89107991719 123865.86252370999 1.3400906383826976 1.0564261466266025 1.0116146184314465 1.037958140197044 0.8888358735866816 0.9445058956135159 1.065054847187777 1.0864599475847914 0.9755221383679266 1.0 16.91841910942313 4.763297134979739 2.7394144086807866 1.0072836270177647 1.4156355311861932 0.774783264457207 0.05445023062029639 0.2578066688705934 2.483803391454961 0.015215859268785515 0.24432119467786967 57982.526477300344 -4.763297134979739 0.4083519041684285 PASTPPIMASAIKDEDDEDRIIAELEVFER ddPTM_BT-474_Trastuzumab_2h_R1 2 PASTPPIMASAIKDEDDEDRIIAELEVFER 30 2 A0A087WTE6 A0A087WTE6 SRCIN1 0 ; 119.89 1.888e-05 65158000.0 58835.0 41033.0 39991.0 34949.0 34058.0 52006.0 52198.0 53960.0 96457.0 41477.0 False True 58518.23889718298 42398.758600027715 45621.385191996684 39373.53981659831 38395.08442241849 48410.94762895589 49672.98332427597 57986.76920332804 72686.46480758073 38829.902349753764 1.5070405887218017 1.091909998076433 1.1749034231677893 1.0140004850372228 0.9888019824665351 1.2467439962352334 1.2792456410746282 1.4933534645805195 1.8719198455064276 1.0 15.2448804586809 1.9570734077759362 2.357150167857165 1.506872019817488 1.1508235343465176 0.20970330407938043 0.23972541327394228 0.3710533575424715 3.7959855300920644 0.12720119950222752 0.0667666505811049 90.58857076910603 -1.9570734077759362 -0.35604848547097045 PASVPPS(ph)PSLSR ddPTM_BT-474_Trastuzumab_2h_R1 6 PASVPPSPSLSR 12 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 1 PASVPPS(0.997)PS(0.002)LSR;PASVPPS(0.979)PS(0.019)LS(0.002)R;PASVPPS(0.997)PS(0.003)LSR;PASVPPS(0.998)PS(0.002)LSR;PAS(0.057)VPPS(0.854)PS(0.081)LS(0.008)R;PASVPPS(0.975)PS(0.022)LS(0.003)R 177.81 2.3909e-05 379500000.0 1121374.0 1314970.0 1191440.0 1002371.0 1140827.0 1512430.0 1355850.0 1144401.0 1595550.0 1271330.0 True False 1115336.6469803648 1358737.9815338498 1359184.3958178724 1129271.0658245853 1286104.556238605 1407879.2739772676 1290262.3556500173 1229802.0137705298 1202348.08177463 1190192.6309596265 0.9371059927342124 1.141611825002083 1.1419869023403308 0.948813693220465 1.0805852118254562 1.1829003451669207 1.0840785954200596 1.0332798084785377 1.0102130113217074 1.0 20.18276365986536 1.5663635662025284 3.362291874042424 1.0082292213386934 1.0785410698080482 0.12131735936840626 0.07475162124354741 0.42754381879666664 11.028776854551293 0.04915950530760223 0.019816899995723947 36.84372789409889 -1.5663635662025284 0.07031184846935479 PAT(ph)PGASSVEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 4 PATPGASSVEQLRK 14 1 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 PAT(0.857)PGAS(0.105)S(0.038)VEQLRK;PAT(0.779)PGAS(0.13)S(0.091)VEQLRK;PAT(0.995)PGAS(0.003)S(0.001)VEQLRK;PAT(0.988)PGAS(0.009)S(0.003)VEQLRK 94.639 0.0023939 2278370000.0 3955770.0 2896420.0 2658060.0 2416080.0 2617970.0 3862160.0 3451790.0 3251260.0 5826300.0 3350780.0 True False 3934472.5738473684 2992825.5887771337 3032291.743728305 2721955.480273735 2951352.961576105 3595177.969746723 3284813.7305816766 3493885.530763753 4390486.433420154 3136930.3516529147 1.254242884855321 0.9540618545133305 0.9666429929279516 0.8677130746111335 0.940841086899164 1.1460815404627482 1.0471427039656265 1.1137912350915764 1.399612341124091 1.0 21.580922067125258 2.0361365112170393 1.352833380743337 1.1854011269632794 0.9954366438820608 0.19682951418057437 0.13809441761087235 0.6425679410294266 2.1954577872622147 0.09441464966961204 0.045698869062046364 108.67671720402156 -2.0361365112170393 -0.1899644830812186 PAT(ph)PHLLHHR ddPTM_BT-474_Trastuzumab_2h_R1 1 PATPHLLHHR 10 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 PAT(1)PHLLHHR 94.191 0.01544 104630000.0 72102.0 49501.0 39615.0 43312.0 41365.0 54644.0 49765.0 11996.0 78826.0 33394.0 True False 71713.81084328535 51148.61086101361 45192.44766024729 48795.29475912059 46632.5875604363 50866.58889813995 47357.67682923852 12891.202434453728 59400.38851428474 31262.766329958202 2.2939048351125626 1.636087169035946 1.4455677780804919 1.560811805459502 1.4916334360260899 1.627066151513149 1.5148268176081727 0.41235002361580725 1.9000362247970064 1.0 14.932157822440246 7.999999999999999 0.25898667427400374 1.053550345669933 8.156525522764214 0.3457961261799397 0.38481269376428295 54.3087084141694 0.7503181568243935 0.4812284516960779 170.07640759768114 99999999.99999979 -7.999999999999999 7.102975177094281 PAVEASTGGEATQETGKEEAGKEEPPPLT(ph)PPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 PAVEASTGGEATQETGKEEAGKEEPPPLTPPAR 33 2 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 PAVEASTGGEATQETGKEEAGKEEPPPLT(1)PPAR;PAVEASTGGEATQETGKEEAGKEEPPPLT(1)PPAR;PAVEASTGGEATQETGKEEAGKEEPPPLT(1)PPAR;PAVEASTGGEATQETGKEEAGKEEPPPLT(1)PPAR 238.54 3.9148e-45 5842010000.0 5853200.0 3255370.0 3087600.0 2727350.0 2540420.0 4396160.0 3915780.0 3387900.0 6091700.0 3402100.0 True False 5821687.02155166 3363723.0225372813 3522307.2420997 3072632.230358508 2863927.428750964 4092263.806647515 3726358.7616677526 3640722.30140762 4590482.159597952 3184975.0653156503 1.8278595286191655 1.0561222469739857 1.1059136005357135 0.9647272482034303 0.8991993249614755 1.284865257254988 1.1699805132692453 1.1430928741185615 1.4412929663369303 1.0 21.602850647210374 4.741689167846268 24.906686416671473 1.1194997125103596 1.8278598035203686 0.6681934633055583 0.149989958514022 170.15050930464645 1354516.068960491 0.03612607233850159 0.25692457695501786 55168.24491726832 -4.741689167846268 0.708360091010009 PAWLWGAEMGANEHGVCIANEAINTR ddPTM_BT-474_Trastuzumab_2h_R1 1 PAWLWGAEMGANEHGVCIANEAINTR 26 0 Q12765;Q12765-2;Q12765-3;C9K052;B8ZZP4;C9J7U9 Q12765 SCRN1 Secernin-1 0 205.38 3.4209e-25 334020000.0 163970.0 167900.0 114030.0 127760.0 125860.0 189280.0 182590.0 152980.0 224050.0 124880.0 False True 163087.20373877976 173488.45000230672 130084.43283347205 143934.4029004722 141887.52496933428 176195.51911719376 173757.42413846383 164396.14441669965 168835.87961618614 116910.05148485294 1.3949801720847723 1.483948110524818 1.1126881836188909 1.2311550724029967 1.2136469291326712 1.5071032548473553 1.4862488035169168 1.4061763067309836 1.4441519567550682 1.0 16.835039447111793 2.747993782039462 24.71076840603077 1.4042141652849625 1.2853914909571509 0.036444811594774085 0.16481915668391273 1322.9410886830287 3465526.8829300366 0.04928204725497082 0.051629175370810694 559.7495872883777 -2.747993782039462 -0.11882267432781157 PAYHSSLMDPDTK ddPTM_BT-474_Trastuzumab_2h_R1 3 PAYHSSLMDPDTK 13 0 O15145;C9JZD1 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 0 ;; 138.02 5.3945e-05 1347930000.0 861790.0 1199750.0 1423600.0 1460030.0 1384130.0 1791260.0 1695480.0 1645320.0 2054950.0 1774050.0 False True 857150.2183938696 1239682.9534858111 1624030.5058469786 1644869.6482997506 1560390.7511187415 1667434.4123724857 1613463.1550374238 1768102.1331656715 1548535.1074192438 1660828.6101593818 0.5160979363858701 0.7464243726911982 0.977843526967619 0.9903909640272276 0.939525452279509 1.0039774135468862 0.971480829007749 1.0645903631175977 0.9323870614624337 1.0 20.663471770841866 4.522285843262488 1.9343773675635092 0.9932976841770027 0.46854379926311557 0.9437916787320286 0.03663537909287456 0.10217481157031179 0.5611225359122723 0.009710584686250573 0.0820607315214491 33287.857470790455 -4.522285843262488 -0.5247538849138871 PCHPDDQFTTSILR ddPTM_BT-474_Trastuzumab_2h_R1 1 PCHPDDQFTTSILR 14 0 Q68E01-2;Q68E01-3;Q68E01;Q68E01-4 Q68E01-2 INTS3 Integrator complex subunit 3 0 119.62 0.00017708 147200000.0 75007.0 75877.0 55788.0 70223.0 82635.0 78694.0 66095.0 55934.0 94188.0 78771.0 False True 74603.1706460612 78402.5200763849 63642.465482011234 79113.22459987356 93158.07743398171 73254.0690057504 62897.73234258055 60108.07910709695 70976.62945453855 73743.76734075396 1.0116539110530676 1.0631748675668258 0.8630216190058911 1.0728123535418053 1.2632671314921904 0.9933594613800951 0.8529226890720645 0.8150936855361695 0.9624763151382127 1.0 16.170233500686752 2.3958359965710834 5.4022752273394525 0.8842604598346999 1.05311443496075 0.2966894598181282 0.10398091225822288 0.23393771927118964 11.612033547515347 0.03837056815818961 0.031956330960106055 248.79176239277766 -2.3958359965710834 0.16885397512605005 PCSEETPAIS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 3 PCSEETPAISPSK 13 0 P33316-2;H0YNJ9 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 1 PCSEETPAIS(1)PSK;PCSEETPAIS(0.999)PS(0.001)K;PCSEETPAIS(0.999)PS(0.001)K 277.31 3.0351e-32 1707420000.0 2301660.0 1343310.0 1174250.0 1021960.0 1008010.0 2016010.0 1867500.0 1675950.0 3551930.0 1889570.0 True False 2289268.118298467 1388021.261301959 1339574.193236032 1151340.0312160812 1136374.0985566385 1876647.9738770803 1777161.8904572076 1801017.899301662 2676604.4449235424 1768976.0248577348 1.294120488988863 0.7846467344935254 0.7572596657118423 0.6508511223653666 0.6423908987958321 1.0608668221085724 1.00462745988891 1.0181132327367208 1.5130812443536656 1.0 20.754483064467728 1.9587869092978412 1.3361266082604328 1.2110885364715078 0.8254898952158162 0.30345998188494505 0.22103123612942197 0.5221149593163945 1.7290660089677594 0.1612348432219179 0.07324698069059966 90.9466924575698 -1.9587869092978412 -0.38559864125569165 PCSEETPAIS(ph)PSKR ddPTM_BT-474_Trastuzumab_2h_R1 9 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 1 PCSEETPAIS(0.985)PS(0.015)KR;PCSEETPAIS(0.977)PS(0.023)KR;PCSEETPAIS(0.914)PS(0.086)KR;PCSEETPAIS(0.97)PS(0.03)KR;PCSEETPAIS(0.992)PS(0.008)KR;PCSEETPAIS(0.995)PS(0.005)KR;PCSEETPAIS(0.971)PS(0.029)KR;PCSEET(0.029)PAIS(0.917)PS(0.054)KR;PCSEETPAIS(0.924)PS(0.076)KR 252.02 3.6148e-24 46123660000.0 8975380.0 5076570.0 4603330.0 4328760.0 4222150.0 7745270.0 7616920.0 6263630.0 14091990.0 7498780.0 True False 8927057.551338455 5245540.563598635 5251438.851138357 4876780.572162239 4759815.775856308 7209857.715304455 7248460.48013993 6731053.876668668 10619207.887491638 7020201.440371446 1.2716241303278206 0.7472065592637877 0.7480467470546682 0.6946781532673802 0.6780169794678229 1.0270157881570665 1.032514599717299 0.9588120702577049 1.5126642700625645 1.0 22.74308099769665 1.934846341426331 1.2589941859859934 1.1963321540128549 0.8249632715963813 0.30185744050778485 0.21359938441919565 0.5458056542789512 1.60041338619355 0.1596764502486971 0.07088798293753855 86.06891761983178 -1.934846341426331 -0.3713688824164736 PDDPS(ph)PLSRMREDR ddPTM_BT-474_Trastuzumab_2h_R1 1 PDDPSPLSRMREDR 14 2 Q86SF2;E9PBY3 Q86SF2 GALNT7 N-acetylgalactosaminyltransferase 7 1 PDDPS(0.5)PLS(0.5)RMREDR 68.12100000000001 0.052121 185240000.0 14743.0 6176.8 14197.0 15325.0 15631.0 12476.0 13929.0 12901.0 17694.0 16110.0 True False 14663.625326101284 6382.391054045551 16195.814197463858 17265.143428692358 17621.515197804434 11613.563485345023 13255.20105605271 13863.738129950614 13333.55078745279 15081.846007535083 0.9722699276186184 0.4231836773069309 1.0738615279172206 1.1447632750040329 1.168392462633586 0.770035941193322 0.8788845244428463 0.9192335025184658 0.8840794940348269 1.0 13.880525403840453 4.212677637721614 24.999857670714082 0.973911831371692 0.6977262083532679 0.3046808672627259 0.17031933556033296 232.82763835023246 224883.87859975512 0.042489033210795474 0.09183460874165437 16318.40237776903 -4.212677637721614 -0.2761856230184241 PEEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 4 PEEQLRK 7 1 A0A590UK20;Q9BXX2 A0A590UK20 ANKRD30B Ankyrin repeat domain-containing protein 30B 0 ;;; 101.64 0.014284 7271500000.0 3658470.0 3580220.0 3313330.0 3099830.0 3294580.0 3731090.0 3745830.0 3718260.0 4653670.0 3685590.0 False True 3638773.2040142287 3699385.458411306 3779818.064019366 3492268.160167266 3714125.234494436 3473168.5303411293 3564629.8924397957 3995735.4421417024 3506835.384483185 3450372.49080765 1.054603006982147 1.0721698797063408 1.0954811615526765 1.0121423612874356 1.0764418173369588 1.0066068343618584 1.0331145121103724 1.1580591523920931 1.0163642893125195 1.0 21.7183206882099 PEINTNHLDK ddPTM_BT-474_Trastuzumab_2h_R1 5 PEINTNHLDK 10 0 Q13907 Q13907 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 0 ;;;; 139.76 4.0492e-05 1619790000.0 2244390.0 1710660.0 1699610.0 1590760.0 1416200.0 2205880.0 2272740.0 1689830.0 3245490.0 2092680.0 False True 2232306.4536151714 1767598.2839841936 1938900.3147250502 1792150.0528957008 1596544.6755249589 2053392.7076829844 2162798.883490076 1815933.695382871 2445682.476837919 1959123.370766515 1.1394414904773313 0.9022393945985206 0.9896774974239869 0.9147714123764012 0.8149280945488923 1.0481181217697313 1.1039625762025758 0.9269113535572696 1.248355521317188 1.0 20.901776819808084 2.527382206852405 24.987960137513863 1.0536894963306231 0.9476453720852347 0.20869292264061068 0.10894320984588508 609.4763491421606 303008.8154598644 0.03429146028550449 0.03232989622157995 336.80785138065556 -2.527382206852405 -0.10604412424538845 PFPTPS(ph)PASLDVYVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 PFPTPSPASLDVYVAR 16 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 PFPT(0.003)PS(0.971)PAS(0.026)LDVYVAR;PFPT(0.002)PS(0.922)PAS(0.076)LDVYVAR 130.72 5.0816e-05 82702000.0 177744.0 99954.0 79024.0 65609.0 89731.0 117574.0 114051.0 110233.0 214807.0 126946.0 True False 176787.04605321508 103280.90846653112 90149.89231107869 73915.09267295759 101157.71097269467 109446.38611942588 108533.91741287027 118459.14621183203 161870.69311633153 118844.19759606138 1.4875530284961425 0.8690446025608403 0.7585552692903734 0.6219495286104503 0.8511792163090606 0.9209232619956959 0.9132454053984643 0.996760032109114 1.362041196714648 1.0 16.85871194184221 1.4636695892690623 4.502095760886515 1.1854021240106594 0.8988984128727207 0.16805010954010446 0.226802939361275 0.30102486340621204 12.256464059791872 0.15069067064478278 0.05832969390729316 29.085034900768413 -1.4636695892690623 -0.2865037111379387 PFSAPKPQT(ph)SPSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 PFSAPKPQTSPSPK 14 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 PFSAPKPQT(0.627)S(0.369)PS(0.004)PK 147.92 1.2775e-05 889000000.0 877800.0 443640.0 388280.0 377440.0 376580.0 689100.0 557950.0 529280.0 960910.0 571660.0 True False 873074.0223327489 458406.28921395674 442946.4490097397 425223.8653002047 424535.230835467 641464.138966917 530959.826924015 568777.5612293823 724106.6060343195 535176.1693772502 1.6313768667029558 0.8565521326320908 0.8276647473394932 0.7945493271776471 0.7932625836637515 1.1986037041098954 0.9921215803421487 1.0627856653094845 1.3530247560853006 1.0 19.02965435071756 1.470485534702275 5.335150197240998 1.1876640003876788 0.9931317386277942 0.05565801443949303 0.2526485071249992 0.4193344153053823 26.238408125491464 0.15487944033808032 0.06358960545636692 29.54510479249541 -1.470485534702275 -0.19453226175988458 PFSAPKPQTS(ph)PSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 PFSAPKPQTSPSPK 14 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 PFSAPKPQT(0.18)S(0.807)PS(0.013)PK 141.6 5.831900000000002e-06 876410000.0 941790.0 453450.0 480320.0 405630.0 382470.0 776010.0 752130.0 624550.0 1155200.0 598230.0 True False 936719.5072827056 468542.80913368624 547944.8809837177 456982.71640981856 431175.28742270183 722366.2552310516 715746.59848438 671157.0924006399 870516.438886936 560050.44922953 1.6725627281816577 0.8366082194528508 0.9783848611094482 0.8159670562509087 0.769886512930891 1.2898235439768364 1.278003793174425 1.1983868476919555 1.554353612401381 1.0 19.09519726513389 2.7057583083947576 24.411702016868546 1.2708154138732914 0.991732657781722 0.17351130763961142 0.2696802573111282 777.7574961690532 578811.4349160613 0.08500005989828732 0.08014487521542865 507.8767226370459 -2.7057583083947576 -0.2790827560915694 PFVPHIPFDFYLCEMAFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 PFVPHIPFDFYLCEMAFPR 19 0 Q12905;A0A0A0MRL0 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 164.62 2.3409000000000004e-11 79926000.0 91823.0 109130.0 108470.0 95367.0 94038.0 123360.0 138410.0 101440.0 122920.0 117750.0 False True 91328.6351704944 112762.32607952188 123741.63316185847 107440.45242180124 106013.18189310541 114832.41355820461 131714.5795224536 109009.96790188277 92628.01304361355 110235.0941891532 0.8284896551526769 1.022925837810164 1.122524855374363 0.974648347806946 0.9617008328690374 1.0417046803730474 1.1948516077506461 0.9888862408447874 0.8402769891471447 1.0 16.750224064521394 4.7383884920772275 10.00149711572082 1.023781999670594 0.8280180426658876 0.27846905802368216 0.09003438473925589 0.09330144220752003 314.34846118164944 0.021749567427110605 0.12559122077876947 54750.550732626325 -4.7383884920772275 -0.19576395700470628 PFVPNVHAAEFVPSFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 PFVPNVHAAEFVPSFLR 17 0 P15170-2;P15170-3;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ; 115.31 0.00032095 1384570000.0 1037760.0 971030.0 978960.0 982870.0 886880.0 1210900.0 1073680.0 1002620.0 1553140.0 1210650.0 False True 1032172.8154659743 1003350.1465499696 1116789.0587271408 1107301.2412240675 999818.9110503991 1127193.333151995 1021741.9965440943 1077440.5956011997 1170389.458009744 1133385.2805103895 0.9106989769632116 0.8852683759031509 0.9853569460724114 0.9769857260943289 0.882152722682403 0.9945367674480419 0.9014957350460563 0.9506393052113782 1.0326492483497676 1.0 20.11220694045178 7.999999997398676 0.05503055586560679 1.1077377466117604 0.6348707269287517 0.265663762022494 0.04364875299714981 593.8987434103105 2.453282064841461 4.597982980787154 23.08472185427079 99999999.4010231 -7.999999997398676 -0.4728670196830087 PGAGQPGEFHT(ph)TPPGTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 PGAGQPGEFHTTPPGTPR 18 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 PGAGQPGEFHT(0.741)T(0.259)PPGTPR;PGAGQPGEFHT(0.664)T(0.336)PPGTPR 125.09 0.00011203 227580000.0 198341.0 148174.0 141261.0 144541.0 146999.0 180014.0 171604.0 151517.0 219057.0 151861.0 True False 197273.1540937567 153105.8820169257 161149.32093737723 162839.87577987718 165718.45131866506 167570.05588737555 163302.8589290594 162823.96792773635 165073.33756341407 142169.1009652567 1.3875951437715452 1.0769279750481207 1.133504536803387 1.145395691991272 1.165643238886088 1.1786671980736965 1.1486522586153751 1.145283798112554 1.1611055879417478 1.0 17.11724841809934 -4.999999999998891 0.16077503112134026 0.4009536124373837 1.2084213964917807 0.35015967131222614 0.07458968911502246 156.25434007487394 1.4402741623748554 30.012617762406535 0.2950285167525948 1.0000000000025544e-05 4.999999999998891 0.807467784054397 PGAGQPGEFHTT(ph)PPGTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 PGAGQPGEFHTTPPGTPR 18 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 PGAGQPGEFHT(0.33)T(0.67)PPGTPR;PGAGQPGEFHT(0.196)T(0.803)PPGTPR 99.93 0.0034766 768620000.0 513200.0 395570.0 337410.0 350960.0 345670.0 429350.0 374060.0 364120.0 490450.0 365000.0 True False 510436.9882218801 408736.3083228858 384914.3951797056 395391.5000152607 389689.0255533906 399670.0450811871 355965.288752034 391292.48336389585 369585.1691932984 341705.38750777824 1.4937926262876409 1.196165829587869 1.1264510576993574 1.1571122799644487 1.1404240020784575 1.169633431875842 1.0417315669157576 1.1451165175292675 1.0815901144809592 1.0 18.38239346867599 PGFAFCQPLEHDLLS(ph)PVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 PGFAFCQPLEHDLLSPVEK 19 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 PGFAFCQPLEHDLLS(1)PVEK;PGFAFCQPLEHDLLS(1)PVEK 118.52 5.000100000000001e-05 63014000.0 132099.0 97264.0 92360.0 83571.0 77259.0 126744.0 118123.0 95177.0 149312.0 112123.0 True False 131387.79366157876 100501.37344267046 105363.48519248869 94151.08003127236 87097.4757000302 117982.485603284 112408.93921631962 102279.59103901325 112516.05827829505 104967.21414667017 1.2517031601695292 0.9574548992244415 1.003775188748601 0.896957024121032 0.8297588576403422 1.1239936828124986 1.070895709009207 0.9743955945720202 1.0719162091991592 1.0 16.67957925590755 4.743080192232312 24.624489538928685 0.9907134916394242 1.251703290682229 0.4745999236921301 0.08192228505956611 344.1031234591105 1874732.0152551318 0.020287319239004203 0.1605546091443716 55345.22944367368 -4.743080192232312 0.2609897990428047 PGHLQEGFGCVVTNR ddPTM_BT-474_Trastuzumab_2h_R1 4 PGHLQEGFGCVVTNR 15 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;; 244.57 4.8413999999999995e-18 6526660000.0 2579940.0 2573260.0 2329710.0 2324260.0 2386400.0 2824350.0 2680450.0 2252970.0 3285620.0 2700920.0 False True 2566049.8896982837 2658909.403531483 2657712.917797671 2618511.077688254 2690293.8946990254 2629109.3323047627 2550786.3931866256 2421098.0617498537 2475922.976052369 2528544.973226054 1.0148326080292647 1.051557093777574 1.0510839023783776 1.0355801875840935 1.063969169299213 1.0397716315681753 1.0087961338224467 0.9575064265757892 0.9791888229274612 1.0 21.269876008091206 2.052014763692662 3.213283608878408 0.975200757081338 1.0442431692457788 0.7704411883066707 0.015637116639082977 0.10045006860118404 2.0765952914386316 0.006800263598907079 0.004321596366693365 112.72357755195765 -2.052014763692662 0.06904241216444074 PGHVS(ph)PLQLTNIQVPQQALPTQR ddPTM_BT-474_Trastuzumab_2h_R1 4 PGHVSPLQLTNIQVPQQALPTQR 23 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 PGHVS(1)PLQLTNIQVPQQALPTQR;PGHVS(0.963)PLQLT(0.037)NIQVPQQALPTQR;PGHVS(1)PLQLTNIQVPQQALPTQR;PGHVS(1)PLQLTNIQVPQQALPTQR 243.9 1.3149999999999998e-37 2191420000.0 799640.0 777410.0 718000.0 730350.0 742130.0 910820.0 784050.0 793430.0 1088800.0 841850.0 True False 795334.8270883565 803285.6218957319 819088.159032124 822812.2351155268 836635.8565508657 847857.1572396576 746122.5061381392 852639.7755559037 820479.8291725228 788122.4122559535 1.009151389073885 1.0192396630320086 1.0392905293576575 1.0440157801886076 1.0615557222336125 1.0757937397221289 0.9467089052859287 1.0818621096122276 1.0410563339062369 1.0 19.588060202898596 4.354308850893696 3.201507166841714 1.0393159984114357 1.0106835661741698 0.05162732239100576 0.03713462532798083 0.6876960781540451 13.39230308681802 0.00898969478585264 0.03133831507975914 22610.431517953843 -4.354308850893696 -0.02863243223726597 PGHVSPLQLT(ph)NIQVPQQALPTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 PGHVSPLQLTNIQVPQQALPTQR 23 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 PGHVS(0.23)PLQLT(0.77)NIQVPQQALPTQR 92.29 0.00027436 0.0 58010.0 65890.0 72422.0 62033.0 66624.0 65156.0 70925.0 60583.0 82556.0 62387.0 True False 57697.680605516885 68083.10881865383 82618.38809669143 69886.37143961324 75108.17148861376 60651.91908072624 67494.08679018868 65104.01109424055 62211.17999372407 58405.40824780211 0.9878824981535532 1.1656987060135122 1.4145674274916227 1.1965736313852953 1.2859797361563723 1.038464089205449 1.1556136463223607 1.114691482302763 1.065161290026 1.0 15.833814346103809 2.7344386558375557 24.909227647465922 1.091218927667122 1.2182747645990064 0.27570049439256294 0.10766204831287012 506.40206771488846 3060205.7882652343 0.03508585670310684 0.03416119323691546 542.5486108415752 -2.7344386558375557 0.12705583693188438 PGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGS(ph)PEPPTSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 PGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGSPEPPTSPR 42 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 PGLRPGSSLLDQDCRPDS(0.001)DGLNLS(0.04)S(0.04)MNS(0.224)AGVS(0.2)GS(0.481)PEPPT(0.011)S(0.003)PR 66.571 0.0013861 177520000.0 28536.0 23625.0 21721.0 18511.0 22193.0 34341.0 25640.0 26469.0 46262.0 34509.0 True False 28382.36534664766 24411.343843385905 24779.127997683485 20854.490702024417 25019.147001783225 31967.087500018715 24399.695245688246 28444.2511868586 34861.34997904042 32306.606075358683 0.8785313220597266 0.755614619079571 0.7669987970845178 0.6455178440402883 0.7744282065229425 0.9894907383787699 0.7552540551233793 0.8804469005660726 1.0790780652638818 1.0 14.97954157783356 1.4187785686073535 3.546602455714246 1.037484478735881 0.7941641242016719 0.5515226293859004 0.08690683822808119 0.17595529206074076 3.848788595362929 0.06788865155320843 0.023318127817815792 26.228808882244753 -1.4187785686073535 -0.24332035453420908 PGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGSPEPPTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 PGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGSPEPPTSPR 42 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 PGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGSPEPPT(0.087)S(0.913)PR 218.32 2.2731e-44 221920000.0 45243.0 30822.0 31999.0 26447.0 28182.0 45017.0 39091.0 31177.0 52025.0 37335.0 True False 44999.41671496983 31847.89163770755 36504.18105970599 29795.18748832798 31770.810652199132 41905.080748619504 37200.01898787828 33503.58605359821 39204.135849284045 34952.24833589838 1.2874541369275039 0.9111829182386977 1.044401513427497 0.8524541025798978 0.9089775955719652 1.1989237529415262 1.0643097585705603 0.958553101695255 1.121648469435332 1.0 15.093097640836078 2.7922442840932713 24.999954289300824 1.0568430782091294 0.9900805892807228 0.05978780071721912 0.1266727714695555 1021.796313743028 475838.6485961099 0.038426044751833976 0.04075695493489882 619.7895993457832 -2.7922442840932713 -0.06676248892840653 PGMYPDPHS(ph)PFAVS(ph)PIPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 PGMYPDPHSPFAVSPIPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 2 PGMY(0.004)PDPHS(0.996)PFAVS(1)PIPGR;PGMYPDPHS(1)PFAVS(1)PIPGR;PGMYPDPHS(1)PFAVS(1)PIPGR 114.04 8.7355e-05 286932000.0 617590.0 511350.0 415970.0 459420.0 450580.0 561050.0 437670.0 431855.0 724920.0 489530.0 True False 614264.9640607 528369.9756323979 474534.96032394446 517582.5248946065 507958.69220310345 522265.9340696397 416498.2300382362 464082.2130152565 546273.1794303315 458287.7762922812 1.3403476938231527 1.1529218167394901 1.0354519253450507 1.1293832209142514 1.1083836804740428 1.1396025839811081 0.9088137445162993 1.0126436641401488 1.191987235291076 1.0 18.80589428029372 7.999999564109328 0.8289913019940727 1.0532405937751361 89.69713594284849 0.5251555079577274 0.07852085020709729 478.18566337965694 1.4436816475383523 0.026668660898069727 79817.39705160474 99999899.63251401 -7.999999564109328 88.64389534907336 PGPTPSGTNVGSSGRS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 6 PGPTPSGTNVGSSGRSPSK 19 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 PGPTPSGTNVGSS(0.001)GRS(0.998)PS(0.001)K;PGPTPSGTNVGSS(0.009)GRS(0.982)PS(0.009)K;PGPTPSGTNVGSS(0.005)GRS(0.983)PS(0.012)K;PGPTPSGTNVGS(0.009)S(0.208)GRS(0.783)PS(0.001)K;PGPTPSGTNVGSS(0.007)GRS(0.99)PS(0.002)K;PGPTPSGT(0.001)NVGS(0.006)S(0.02)GRS(0.939)PS(0.034)K 244.98 9.0958e-25 10443290000.0 2056520.0 1964700.0 2095660.0 1591134.0 2168120.0 3567800.0 2533650.0 1990760.0 4534760.0 2576490.0 True False 2045447.92482085 2030093.8518137687 2390710.7121967413 1792571.4012573569 2444217.2305459473 3321166.3836978227 2411087.670017083 2139320.620074451 3417229.1606708122 2412056.2023559357 0.8480100599741386 0.8416445063887436 0.9911505004989745 0.7431714897465874 1.013333448929838 1.3769025698712696 0.9995984619521276 0.8869281810203697 1.4167286638400427 1.0 21.201832092613394 3.0094074293325743 20.624344677869626 1.107371316457508 0.8663261846723443 0.38444063926409167 0.16485772140322463 29.811714526035974 65352.32470510848 0.04871147935390029 0.05806314972532041 1021.8977180063995 -3.0094074293325743 -0.24104513178516374 PGPYDRPGTAR ddPTM_BT-474_Trastuzumab_2h_R1 4 PGPYDRPGTAR 11 1 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ;;; 103.63 0.0024699 953700000.0 782860.0 747250.0 675670.0 601745.0 598450.0 804490.0 690770.0 665940.0 902840.0 678220.0 False True 778645.1687439223 772121.7645278359 770798.4629710787 677925.8553016948 674659.060208948 748877.4998657604 657354.8161023429 715635.8243748007 680347.1794361855 634935.418946645 1.2263375856960241 1.2160634632869944 1.2139793118642364 1.067708360680793 1.0625632782121437 1.1794545988758114 1.0353097283388153 1.1271001790418895 1.0715218573959513 1.0 19.276250333245113 7.999999999999999 0.21121265728665845 1.0315624335639595 2.1252693863632324 0.6144978260024233 0.049245950820118185 35.379895235944616 0.4419827619476358 0.08200457852447927 13.034867732419745 99999999.99999979 -7.999999999999999 1.0937069527992729 PGRPLS(ph)PANVPALPGETVTSPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 PGRPLSPANVPALPGETVTSPVR 23 1 Q8IY33;Q8IY33-5;Q8IY33-3 Q8IY33 MICALL2 MICAL-like protein 2 1 PGRPLS(1)PANVPALPGETVTSPVR;PGRPLS(1)PANVPALPGETVTSPVR 126.36 3.052e-05 754430000.0 405250.0 324924.0 348099.0 280148.0 306659.0 474103.0 382960.0 375441.0 536130.0 423606.0 True False 403068.17902750795 335738.8989192944 397108.3134692522 315614.7080757784 345710.20593970397 441329.37552841683 364434.7617507321 403458.3138707685 404007.9452739382 396571.1024126572 1.0163831317393626 0.8466045480286584 1.0013546399455904 0.7958590682872335 0.8717483544223824 1.1128631734472318 0.9189644922022452 1.0173669019659046 1.018752861254985 1.0 18.597220028642813 2.7702016077427594 24.90608122246939 1.006983717786804 0.9022037409921126 0.33099768042496436 0.07579497095864206 746.4573667048854 587569.68203785 0.022008366448684126 0.02334140046845022 589.1170712159951 -2.7702016077427594 -0.10477997679469131 PGSGAAAS(ph)GGRGDLPYGPGRRS(ph)SGGGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 PGSGAAASGGRGDLPYGPGRRSSGGGGR 28 3 P54826 P54826 GAS1 Growth arrest-specific protein 1 2 PGS(0.004)GAAAS(0.992)GGRGDLPY(0.058)GPGRRS(0.496)S(0.45)GGGGR 81.487 0.007431 624340000.0 115760.0 167980.0 150800.0 130310.0 133370.0 166480.0 164490.0 151330.0 152750.0 186750.0 True False 115136.7610221452 173571.11275394587 172031.32922290292 146807.2326390146 150353.87895407696 154971.62945176655 156532.9902871785 162623.0130381695 115106.80924513465 174831.45511528113 0.6585586154746914 0.9927911006603233 0.9839838552477193 0.8397072056753873 0.8599932938551359 0.8864058778758129 0.8953365410358398 0.9301702198322289 0.6583872974644924 1.0 17.415605247697847 PGWLSS(ph)PTLGR ddPTM_BT-474_Trastuzumab_2h_R1 5 PGWLSSPTLGR 11 0 Q5XPI4;Q5XPI4-2;C9JS59;C9J266 Q5XPI4 RNF123 E3 ubiquitin-protein ligase RNF123 1 PGWLS(0.188)S(0.803)PT(0.009)LGR;PGWLS(0.012)S(0.986)PT(0.002)LGR;PGWLS(0.001)S(0.997)PT(0.002)LGR;PGWLSS(1)PTLGR;PGWLSS(1)PTLGR 316.12 9.086099999999999e-46 1527730000.0 3669840.0 3100170.0 2880570.0 2770640.0 2801350.0 3338170.0 3393310.0 2915610.0 4019070.0 3118990.0 True False 3650081.989197555 3203357.284357661 3286129.217636718 3121402.739919878 3158085.317597687 3107410.1651069424 3229162.631596975 3133187.6233675936 3028624.0512788463 2919933.387898313 1.250056595237874 1.0970651925259667 1.1254123916854084 1.0689979274378507 1.0815607406273022 1.064205840443357 1.1059028418183323 1.073033938497746 1.0372236790849416 1.0 21.477504026770244 7.999999999755567 0.8205657198769432 1.067715832033224 51.85967757902082 0.7603518936518883 0.030776609482842266 261.2147775215143 0.8198003775499096 0.009410896011866008 24711.615853545172 99999999.94371724 -7.999999999755567 50.791961746987596 PHIDNDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 PHIDNDVK 8 0 A0A087WWM4;Q9P2T1;Q9P2T1-3;F8WAN9;H0YMB3;H0YNH0;H0YMV5;A0A0B4J281;H0YMG3;H0YMR9 A0A087WWM4 GMPR2 GMP reductase;GMP reductase 2 0 74.464 0.040909 261200000.0 365700.0 334900.0 298160.0 258390.0 266690.0 389750.0 411520.0 152870.0 533880.0 351870.0 False True 363731.1118330899 346046.9440486748 340138.3363468217 291102.1475066762 300651.3907045272 362807.4998728139 391613.2054409374 164277.93565813117 402312.4276254833 329413.35534893704 1.1041784005624216 1.050494579013405 1.0325578208161112 0.8836986806388618 0.9126873146538239 1.1013745920790112 1.1888200617309947 0.4986984680208755 1.2212996865270584 1.0 18.3295395216234 PHSEAGTAFIQTQQLHAAMADTFLEHMCR ddPTM_BT-474_Trastuzumab_2h_R1 1 PHSEAGTAFIQTQQLHAAMADTFLEHMCR 29 0 P14618;B4DNK4;H3BUW1;H3BTJ2;H3BT25;H3BN34;H3BQZ3;P14618-2;H3BTN5;H3BR70;H3BQ34;H3BU13 P14618;P14618-2;H3BU13 PKM Pyruvate kinase PKM;Pyruvate kinase 0 151.95 1.0302e-08 533490000.0 63118.0 64620.0 82648.0 73612.0 51493.0 62062.0 90455.0 51343.0 62372.0 53081.0 False True 62778.179701069064 66770.83763638507 94284.12001070597 82931.27165239159 58050.328327077164 57771.800018233684 86079.34607834353 55174.475374471294 47001.25634198062 49693.32513506951 1.2633121154689109 1.3436580759065293 1.8973196048852825 1.6688613898743803 1.168171543548209 1.1625665994619272 1.7322114357285323 1.1102995266366997 0.9458263502035397 1.0 15.60076445988334 1.5695579729707358 5.764106779165909 0.9908806123019727 1.4595018268571478 0.44079291163744416 0.23194633776768606 0.1372098775389042 9.457367619346911 0.1371447413572928 0.06318731356318712 37.115727111605 -1.5695579729707358 0.46862121455517514 PHSIDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 PHSIDGR 7 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 79.307 0.09799 0.0 305820.0 261470.0 240080.0 238460.0 241630.0 269750.0 290120.0 141660.0 392490.0 219200.0 False True 304173.4990997959 270172.87088804704 273881.17718723125 268649.01155014546 272400.1482467844 251102.81742319808 276085.7872339731 152231.38853490452 295766.09859654965 205210.46833343853 1.482251376209308 1.3165647594987875 1.3346355057394652 1.3091389232328445 1.3274183839596914 1.223635516562395 1.3453786713520481 0.7418305204954244 1.4412817289416775 1.0 17.646744802981775 1.7966610688536488 24.99999999991549 1.0334915343074065 1.328017960155748 0.34856018447264137 0.1697049025608773 164.876962754682 70962.2742502259 0.0696862150018753 0.04135562538523015 62.612503482596594 -1.7966610688536488 0.29452642584834154 PIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 PIGPDDAIDALSSDFTCGSPTAAGK 25 0 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0YA91;P20810-5;E9PCH5;P20810-2;P20810-3;F8W7E0;A0A0C4DGB5;E7EVY3 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 1 PIGPDDAIDALSSDFTCGS(1)PTAAGK;PIGPDDAIDALSSDFT(0.02)CGS(0.94)PT(0.04)AAGK;PIGPDDAIDALSSDFT(0.009)CGS(0.984)PT(0.007)AAGK 253.21 5.3787e-45 105444000.0 191073.0 127441.0 108251.0 98954.0 106784.0 168365.0 150408.0 122536.0 213597.0 145878.0 True False 190044.28419820586 131682.7966452887 123491.79986544064 111481.56625401776 120382.30944164477 156726.3238385792 143132.19042564262 131680.25854520028 160958.88140316232 136567.94114756078 1.3915731803620313 0.9642292000507373 0.9042517506506783 0.81630846388438 0.881482933916185 1.1476069897637062 1.0480658141502566 0.9642106151612889 1.1785993114536837 1.0 17.059259330131766 1.2619506983808773 24.985524881929756 1.0892999073500556 1.0026712757506653 0.029760925573486308 0.1588463838265656 727.1019687651597 776700.9086824118 0.10676799281958238 0.03894345225001635 18.27892699840353 -1.2619506983808773 -0.08662863159939027 PIPQT(ph)PESAGNK ddPTM_BT-474_Trastuzumab_2h_R1 1 PIPQTPESAGNK 12 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 PIPQT(0.997)PES(0.003)AGNK 123.1 0.00058526 0.0 355070.0 211540.0 205260.0 186620.0 186380.0 293450.0 246150.0 211140.0 371870.0 232120.0 True False 353158.34257198597 218580.9810213696 234158.82384809677 210246.07286542037 210114.38823919062 273164.4922069975 234242.78411568486 226896.3389471957 280227.6213027057 217305.9028720697 1.6251668173960927 1.0058676645799656 1.0775539032915666 0.96751201917048 0.9669060318296424 1.2570504924010846 1.0779402723062985 1.044133343587873 1.2895536550043867 1.0 17.72936783868724 4.742970042859657 24.954085744064326 1.0751711239772432 1.6251670425826057 0.7044008278784628 0.10666872174891784 235.44328783001342 1332385.9626512278 0.024859657244979773 0.19690362833658023 55331.19410697883 -4.742970042859657 0.5499959186053625 PIRPGQHPAAS(ph)PTHPSAIR ddPTM_BT-474_Trastuzumab_2h_R1 5 PIRPGQHPAASPTHPSAIR 19 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 PIRPGQHPAAS(0.999)PT(0.001)HPSAIR;PIRPGQHPAAS(0.995)PT(0.005)HPSAIR;PIRPGQHPAAS(0.994)PT(0.006)HPSAIR;PIRPGQHPAAS(0.963)PT(0.037)HPSAIR;PIRPGQHPAAS(0.999)PT(0.001)HPSAIR 209.75 1.259e-16 4483280000.0 1794740.0 1831620.0 1974810.0 1915300.0 2040040.0 2310110.0 2069240.0 1965920.0 2401740.0 2179720.0 True False 1785077.3192543592 1892584.3644623295 2252846.082643771 2157776.7836198667 2299827.0017355843 2150417.533114012 1969142.9559355683 2112626.933139486 1809863.3586671695 2040608.4034478206 0.8747770107377216 0.9274608304389078 1.1040070592855311 1.057418356199101 1.1270300552765473 1.0538119560228496 0.9649783626336617 1.0352926752482163 0.8869234075529713 1.0 20.96056792239138 4.4100983753153065 6.138963381387487 1.0318343781332702 0.887091110283393 0.3917610807014261 0.06489909753805304 0.17315272780556548 11.62452416525847 0.016200724181369405 0.04610149324395205 25709.78088433109 -4.4100983753153065 -0.14474326784987712 PIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 4 PISPGLSYASHTVGFTPPTSLTR 23 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 PIS(0.999)PGLS(0.001)YASHTVGFTPPTSLTR;PIS(0.981)PGLS(0.019)YASHTVGFTPPTSLTR;PIS(0.99)PGLS(0.009)YAS(0.001)HTVGFTPPTSLTR;PIS(0.945)PGLS(0.054)YASHTVGFTPPTSLTR 295.3 7.708499999999997e-62 3129250000.0 1005193.0 790924.0 799509.0 666665.0 723004.0 887405.0 918236.0 801360.0 1049797.0 890264.0 True False 999781.1525754423 817249.4272163459 912072.917743195 751064.7206452978 815074.2738195509 826060.7810766761 873817.4166778398 861161.5524236278 791088.5959090975 833446.5893266422 1.1995743523087485 0.9805660466816688 1.0943387727821605 0.9011551913027775 0.9779562173000975 0.9911382344777087 1.0484384096931922 1.033253436335227 0.9491773150673439 1.0 19.668730222799624 PIS(ph)PSPSAILER ddPTM_BT-474_Trastuzumab_2h_R1 1 PISPSPSAILER 12 0 Q5T5P2;Q5T5P2-3;Q5T5P2-7;Q5T5P2-9;Q5T5P2-2;Q5T5P2-10;Q5T5P2-8;Q5T5P2-6;Q5T5P1;Q5T5P2-4;Q5T5P0 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 PIS(0.988)PS(0.012)PSAILER 197.38 2.0513e-07 371510000.0 246700.0 177330.0 182190.0 177210.0 159660.0 200680.0 201500.0 192660.0 280480.0 195410.0 True False 245371.79461094644 183232.32185175148 207840.76837613183 199644.76783024936 179991.75462103848 186807.46394990713 191752.6751952487 207037.26750765738 211359.46223944635 182938.76650108208 1.3412782829138354 1.001604664534937 1.1361220606836357 1.0913201813300106 0.9838907196303515 1.0211474993672387 1.0481795568142442 1.1317298758895522 1.1553563319680313 1.0 17.48100130300937 4.747375573258749 24.852548736626318 1.0688860925927834 1.3412784340522368 0.6602197177740792 0.05971134383532824 674.4847314049304 1901571.8890945134 0.01471914052143125 0.17426635774843102 55895.33627233131 -4.747375573258749 0.27239234145945335 PIT(ph)PVYTVAPNVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 PITPVYTVAPNVQR 14 0 B7Z8Z7;A0AV96;A0AV96-2 B7Z8Z7 RBM47 RNA-binding protein 47 1 PIT(1)PVYTVAPNVQR;PIT(0.975)PVYT(0.025)VAPNVQR;PIT(0.999)PVYT(0.001)VAPNVQR;PIT(1)PVYTVAPNVQR 228.38 1.8767e-11 900400000.0 703010.0 445976.0 398872.0 389637.0 349286.0 505240.0 414016.0 434914.0 642600.0 447256.0 True False 699225.0722717545 460820.0415618146 455029.7105424253 438965.0042496183 393765.50171968003 470313.94800703065 393988.46438529104 467369.4911285436 484239.8403988455 418711.73916487326 1.6699437987250352 1.1005663287132263 1.0867374090107642 1.0483704257376218 0.9404214520114749 1.1232404158170457 0.9409539488219433 1.116208234478257 1.156499317083082 1.0 18.6755978410403 4.746489956225322 3.814167143590636 1.0531667574661996 1.7370438505676744 0.8743063445645527 0.06993265548602427 0.08292338394847835 2.334679245178825 0.016446501576290438 0.16080638366554234 55781.47016089743 -4.746489956225322 0.6838770931014748 PIWTAEDQLDGSLEDNLDLPHHGLADSSADLS(ph)CDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 PIWTAEDQLDGSLEDNLDLPHHGLADSSADLSCDSR 36 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 PIWTAEDQLDGSLEDNLDLPHHGLADS(0.12)S(0.12)ADLS(0.38)CDS(0.38)R 67.505 0.009541 32045000.0 11674.0 9297.5 8124.2 7509.9 7034.8 9072.6 8384.8 4446.8 11667.0 8595.0 True False 11611.14848110333 9606.961667042564 9268.016743187707 8460.652569992602 7930.640081473643 8445.432516603183 7979.19519095346 4778.642796392865 8791.824179790421 8046.459741450287 1.4430133069938837 1.19393646096973 1.1518129762639249 1.0514751632209947 0.9856061344121297 1.0495836414985884 0.9916404788368824 0.5938814024975867 1.0926325939966475 1.0 12.974138454611946 5.429462028396987 0.4261759719751793 0.8685928751612424 2.233661722802872 0.5703516348344992 0.13194001006499448 6.379842940573681 0.5804588894658428 0.09783753060920357 4.9765053212964805 268820.2795565411 -5.429462028396987 1.3650688476416295 PKPRPS(ph)PSSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 PKPRPSPSSTR 11 2 M0QZR4;Q92888;Q92888-3;M0QYC1;Q92888-2;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 PKPRPS(0.931)PS(0.032)S(0.032)T(0.005)R;PKPRPS(0.975)PS(0.007)S(0.007)T(0.012)R 97.631 0.004822 693860000.0 938030.0 659190.0 629710.0 566610.0 590510.0 844110.0 768460.0 692530.0 1076020.0 710810.0 True False 932979.7507049297 681130.7406612298 718367.6944625597 638342.7679041681 665707.9482730142 785758.6625212089 731286.6539977218 744210.1051960852 810849.2889292947 665445.4972449424 1.4020378146183643 1.0235710414770662 1.079528973352024 0.9592713010261785 1.0003943989840767 1.1808009307665068 1.098942974331291 1.1183637251694416 1.218505936679035 1.0 19.343960982686006 2.7151669106479313 24.841049850143136 1.1274535677693742 1.080932298413789 0.009500059485983203 0.12488601203179955 3276.426110852667 3479132.6838456 0.03984007528858974 0.03759087720824571 518.999465577014 -2.7151669106479313 -0.046521269355585204 PKPRPS(ph)PSSTREPLLSSSENGNGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 PKPRPSPSSTREPLLSSSENGNGGR 25 3 M0QZR4;Q92888;Q92888-3;M0QYC1;Q92888-2;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 PKPRPS(0.985)PS(0.006)S(0.007)T(0.002)REPLLSSSENGNGGR 150.23 9.6132e-07 173220000.0 58700.0 50686.0 56037.0 46478.0 51248.0 73990.0 72772.0 60180.0 128870.0 68934.0 True False 58383.96572218312 52373.05286966597 63926.52251766448 52362.11003450332 57774.129029305936 68875.24545372544 69251.74034396358 64670.93718784807 97111.71526952862 64534.5731026334 0.9046928323106967 0.8115503109685687 0.9905779095493217 0.811380745499448 0.8952430650997582 1.0672611926042928 1.073095195560187 1.0021130392386388 1.5048013894054235 1.0 15.977784642110816 2.2577187249490587 1.0054217473654459 1.184121318234211 0.8755154069830297 0.44686575054541 0.14024073093350223 0.5083653422399499 0.9846903863113717 0.0969766154207875 0.05578867561678672 181.01673403805796 -2.2577187249490587 -0.3086059112511813 PKPSS(ph)SPVIFAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 PKPSSSPVIFAGGQDR 16 1 Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3 Q15366;Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 PKPS(0.014)S(0.621)S(0.365)PVIFAGGQDR 171.06 3.0606e-09 1305400000.0 554360.0 346340.0 352970.0 289490.0 310350.0 487270.0 423800.0 461270.0 696160.0 474230.0 True False 551375.3873551865 357867.7175330487 402665.1079297616 326139.40431792184 349871.2329114325 453586.1718102011 403299.17492678127 495692.30968160025 524600.6960660755 443964.2353912705 1.2419364971353006 0.8060733027687602 0.9069764540265016 0.7346073812240566 0.788061751422583 1.0216727737324396 0.9084046478909485 1.1165140571396281 1.1816282804936735 1.0 18.76008393591788 1.7433508817731846 4.763085722438323 1.1128431384021409 0.9021257094372397 0.2590109193719906 0.14063548760183428 0.21781907931727618 11.41458346057056 0.07176993350083091 0.03675099212992792 55.3797360864715 -1.7433508817731846 -0.2107174289649012 PKPSSS(ph)PVIFAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 PKPSSSPVIFAGGQDR 16 1 Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3 Q15366;Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 PKPS(0.002)S(0.03)S(0.968)PVIFAGGQDR;PKPS(0.025)S(0.195)S(0.78)PVIFAGGQDR 195.09 6.5654e-11 1522370000.0 1548310.0 920080.0 921770.0 811990.0 817690.0 1230190.0 1118200.0 1182910.0 1675180.0 1158390.0 True False 1539974.0709934111 950704.3065998949 1051547.2038315325 914787.850744789 921817.974671658 1145149.8608557712 1064108.394061179 1271184.7508952687 1262354.3352619614 1084460.5584524241 1.4200369566146565 0.8766610267104544 0.9696500215112843 0.843541836182806 0.8500244361004105 1.0559626645066313 0.9812329141593783 1.1721816353646912 1.1640389550574344 1.0 20.048546152846267 1.7554501310637582 16.268568890200424 1.1258695941123429 0.984120899209465 0.08432847654788378 0.1625235641951609 1.0063915023951122 976.7562563246383 0.07369573882061589 0.04074613248094758 56.94428326943073 -1.7554501310637582 -0.1417486949028779 PLEGSSSEDSPPEGQAPPSHS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 PLEGSSSEDSPPEGQAPPSHSPR 23 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 PLEGSSSEDSPPEGQAPPS(0.092)HS(0.908)PR;PLEGSSSEDSPPEGQAPPS(0.088)HS(0.912)PR;PLEGSSSEDSPPEGQAPPS(0.326)HS(0.674)PR 193.06 4.6802e-18 434290000.0 580960.0 401250.0 416370.0 385250.0 398700.0 527310.0 488970.0 467080.0 683890.0 470270.0 True False 577832.1759107244 414605.3636892526 474991.276847082 434022.61049942725 449472.08171995496 490858.30085422297 465316.653053205 501935.8813841814 515354.4731564992 440256.96598159656 1.3124884341634215 0.9417349314731428 1.0788955395357387 0.9858392803205982 1.0209312207424417 1.1149359096676772 1.0569205918542035 1.1400975343230868 1.1705765336556693 1.0 18.747986305767792 1.749077584982273 24.999999915955602 1.117065465998027 1.0645220708363652 0.008384636157448444 0.10225424762515098 8.94939886193428 21315.132377755363 0.04438309666865007 0.02461254847814142 56.114821397573834 -1.749077584982273 -0.05254339516166184 PLENLEEEGLPKNPDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 PLENLEEEGLPKNPDLR 17 1 Q15008;Q15008-4;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 140.28 6.085800000000001e-07 173293000.0 320780.0 321320.0 275470.0 320300.0 364480.0 385900.0 359800.0 324290.0 549740.0 356570.0 False True 319052.95612200856 332014.9419579584 314253.7815718373 360849.94715890073 410894.3675577864 359223.64131088887 342395.0994305241 348490.1665112533 414263.943138595 333813.3973250642 0.955782358283595 0.9946123930869244 0.9414055400113858 1.0809930040270632 1.2309103554572483 1.0761211029558542 1.0257080817433555 1.04396698665721 1.2410045446294322 1.0 18.348682331673466 3.681194672021001 6.0966936654029915 1.09879846419733 0.9671338069967153 0.40101062110401675 0.07618498101691813 0.22780195740215395 18.408397456242692 0.0206802799721365 0.03254770166465037 4799.485368271742 -3.681194672021001 -0.13166465720061482 PLGAAPQAEHQGLPVPGS(ph)PGGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 PLGAAPQAEHQGLPVPGSPGGQK 23 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 PLGAAPQAEHQGLPVPGS(1)PGGQK 98.812 0.0018432 540880000.0 481710.0 260070.0 258200.0 189010.0 278000.0 429220.0 330290.0 296030.0 560020.0 328670.0 True False 479116.52688301273 268726.2727343652 294552.3156853677 212938.64662036812 313401.65216490487 399549.03167519945 314312.6108696713 318121.26180988114 422010.5748835376 307693.9992114562 1.5571201521994908 0.8733555851691756 0.9572897633370575 0.6920467970323676 1.0185497701225112 1.2985272143725421 1.021510369637292 1.0338884171454348 1.3715268284888447 1.0 18.231136782286715 2.977973404919499 24.533627546908747 1.1305211138964881 0.9862924418757528 0.0577292773202267 0.23464599916771675 1673.6706635249668 1864168.0334762288 0.07066065207949317 0.07557360679669169 950.5465828385139 -2.977973404919499 -0.1442286720207353 PLHISTFINELDSGFR ddPTM_BT-474_Trastuzumab_2h_R1 3 PLHISTFINELDSGFR 16 0 E9PGT1;Q15631 E9PGT1 TSN Translin 0 ;; 238.07 8.848499999999998e-20 689951000.0 275780.0 431737.0 448633.0 451742.0 433056.0 454837.0 472579.0 387362.0 430055.0 485570.0 False True 274295.23112203815 446107.10505447234 511796.62681205943 508932.49088184943 488203.114675989 423395.1887611315 449718.54834290606 416268.9194243806 324073.7076917606 454580.5068826082 0.6034029769623903 0.981359953407936 1.1258657576890485 1.1195651445152643 1.0739640333985188 0.9313975904172898 0.9893045159964201 0.915721006778407 0.7129071809835656 1.0 18.794176294917353 1.5433086659415842 4.36118697320142 0.844513460098146 0.9878446986209541 0.08036542260948876 0.15395183139598956 0.3559543710278762 14.958315417675895 0.09432735904176338 0.040301503643763455 34.93885480365496 -1.5433086659415842 0.14333123852280816 PLHLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 PLHLLK 6 0 A4PB68 A4PB68 GON4L 0 72.054 0.086609 269120000.0 528610.0 566320.0 528810.0 457660.0 509630.0 668410.0 661730.0 551210.0 814630.0 699010.0 False True 525764.0224940915 585169.6188523308 603261.8515010829 515599.7090750636 574528.3596863331 622204.3899678957 629719.5918459153 592344.0891876663 613875.3519827438 654398.5833474302 0.8034308690044266 0.8942097885649843 0.9218569031968731 0.7878985715977992 0.8779486605051332 0.9508033877230414 0.9622875230333247 0.9051732449628207 0.9380756126374864 1.0 19.319810099550445 2.827223403427405 4.631071956130608 0.9430130701949424 0.8572486617174724 0.5446907541296073 0.043023051518727845 0.19960971888795273 7.446009013768109 0.01339559065382426 0.014201675598991829 671.77432840434 -2.827223403427405 -0.08576440847747002 PLPS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 4 PLPSPPK 7 0 A0A2R8Y5E4;A0A2R8YFK2;A0A2R8Y6M6;A0A2R8Y4C2;A0A2R8YFS8;A0A2R8Y8C4;A0A2R8Y5C9;A0A2R8Y596;P56945-4;P56945-5;P56945-8;P56945;P56945-7;P56945-3;P56945-2;P56945-6 A0A2R8Y5E4 BCAR1 Breast cancer anti-estrogen resistance protein 1 1 PLPS(1)PPK;PLPS(1)PPK;PLPS(1)PPK;PLPS(1)PPK 78.334 0.03736 1132130000.0 4028080.0 2669540.0 2386810.0 2307770.0 2334980.0 3327270.0 3280390.0 2981290.0 5128610.0 2957320.0 True False 4006393.2648417624 2758394.0251289923 2722852.1014755745 2599933.445379013 2632325.8624892416 3097263.656451098 3121705.003393265 3203768.998483875 3864732.7853531283 2768581.3057109667 1.4470925078405554 0.9963203968180525 0.9834828024948868 0.9390850974887136 0.9507851032076752 1.1187186917942893 1.1275468041895258 1.1571879763383552 1.3959253345318214 1.0 21.400715459848293 2.045057254352076 1.8562112115218543 1.201262505794578 1.0510582313977217 0.0804988663610684 0.16429512581138705 0.7412547370079993 4.81777094252474 0.09489512699682026 0.05014513140155908 110.93210507644646 -2.045057254352076 -0.15020427439685635 PLSEEQLDGILS(ph)PELDK ddPTM_BT-474_Trastuzumab_2h_R1 2 PLSEEQLDGILSPELDK 17 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 PLSEEQLDGILS(1)PELDK;PLSEEQLDGILS(1)PELDK 188.96 4.0022e-10 46130000.0 220220.0 138620.0 117023.0 110405.0 116009.0 180279.0 155908.0 162151.0 235440.0 145143.0 True False 219034.35998874233 143233.88290244038 133498.82121784962 124382.26167992041 130782.05851078579 167816.73706111842 148366.13441360218 174251.53100609416 177418.9667343667 135879.84947682594 1.611970875976708 1.054121589433087 0.9824769583706199 0.9153841585696898 0.9624830982248801 1.2350377021115206 1.0918921016239846 1.282394201031349 1.305704763564852 1.0 17.051971999597907 1.7529481261134976 24.999999999992266 1.2233867346806955 1.1042154033294247 0.017095438275317898 0.20206846811106507 14.270664935060312 24830.5772255057 0.0938469858500796 0.052043309459687645 56.617165917029574 -1.7529481261134976 -0.11917133135127078 PLSGQAPGS(ph)PPSTRPPPWLSELPENTSLQEHGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 PLSGQAPGSPPSTRPPPWLSELPENTSLQEHGVK 34 1 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 PLS(0.006)GQAPGS(0.309)PPS(0.309)T(0.309)RPPPWLS(0.068)ELPENTSLQEHGVK 71.878 0.0023038 124180000.0 101940.0 67739.0 68458.0 74298.0 71679.0 88948.0 87765.0 77389.0 132520.0 88514.0 True False 101391.16636659877 69993.65166590971 78096.29135239714 83704.11918205436 80806.8957752813 82799.23412106991 83519.47165514156 83164.16015337947 99862.2216770229 82864.96073935211 1.223571042114169 0.8446712704791051 0.9424525234259797 1.0101268188051373 0.975163628321211 0.9992068225496546 1.0078985244179164 1.0036106867288392 1.2051200023027209 1.0 16.3384745698863 1.4028170780813352 13.03144809554858 1.1034152850628691 0.9933497848300076 0.13998341444639584 0.09979715231321547 1.39470585037312 240.5717914816345 0.06077377961154794 0.022385788182578695 25.282328974411037 -1.4028170780813352 -0.11006550023286155 PLSPGEILGCT(ph)SPRLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 PLSPGEILGCTSPRLSK 17 1 I3L1H5;Q9BZG8-3;Q9BZG8-2;Q9BZG8 I3L1H5 DPH1 Diphthamide biosynthesis protein 1 1 PLSPGEILGCT(0.468)S(0.468)PRLS(0.064)K 63.128 0.090916 150760000.0 62572.0 171910.0 157630.0 194410.0 195830.0 126460.0 103030.0 97674.0 50109.0 114410.0 True False 62235.119304402724 177631.92042821067 179822.93385547862 219022.28606669352 220767.7897246522 117718.11785481987 98046.04528717873 104962.92985852217 37760.30837619938 107108.25584867103 0.5810487605393578 1.6584335074896532 1.6788895723364523 2.044868384152771 2.061165014549076 1.0990573688468896 0.9153920443416057 0.9799704889865828 0.35254339711729976 1.0 16.708710160994542 2.5283012177809963 5.0818087142214745 0.8480951217088962 1.6365299417156571 0.4442660533432913 0.41919337643781696 0.19991735891765147 11.475982493280165 0.14392752337234146 0.1321372601325833 337.5213253913709 -2.5283012177809963 0.7884348200067609 PLTS(ph)PESLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 PLTSPESLSR 10 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 PLT(0.138)S(0.862)PES(0.001)LSR;PLT(0.008)S(0.991)PES(0.001)LSR 201.09 2.6041e-07 312920000.0 780490.0 685700.0 588810.0 543000.0 580940.0 722440.0 650410.0 651670.0 858960.0 619370.0 True False 776287.9285605912 708523.1099855972 671709.3299717328 611743.744324955 654919.265498848 672499.4232408347 618947.1834925157 700300.9245132095 647280.8174743108 579841.2763306653 1.3387938393642373 1.2219259630312151 1.158436553917693 1.0550193118299096 1.1294802426679402 1.1597991565838948 1.0674424342629059 1.2077459006451445 1.116306899657807 1.0 19.145298510557726 4.5400488593353865 1.7944262113937302 1.119631612802653 1.3647312365724833 0.6266877087990714 0.05600131047293367 0.38223996930964677 1.6918050150905046 0.014315359221681298 0.13918934083929102 34677.586150558964 -4.5400488593353865 0.2450996237698302 PLTS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 5 PLTSPLR 7 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 PLT(0.079)S(0.921)PLR;PLT(0.041)S(0.959)PLR;PLT(0.028)S(0.972)PLR;PLT(0.059)S(0.941)PLR;PLT(0.026)S(0.974)PLR 143.45 0.0025393 1638320000.0 3390500.0 3174870.0 3528120.0 2557470.0 1733350.0 2512780.0 2990780.0 2154420.0 4972280.0 2444420.0 True False 3372245.924719963 3280543.628700554 4024848.629031213 2881245.439776696 1954081.8481296357 2339077.4330478753 2846104.545510904 2315193.7603230933 3746928.2191384495 2288415.022826751 1.4736164074619718 1.433544001405952 1.7587931336246614 1.2590572125407804 0.8539018616106914 1.0221386460566684 1.2437012155230784 1.011701871045779 1.6373464523537686 1.0 21.12591728974314 3.5096716199824676 9.355789193373118 1.1181704097461922 1.5380334742073785 0.44499597537217783 0.21294960804270888 0.39023215786921994 108.25470701761085 0.05549522669793616 0.08455561647781998 3233.4907282406184 -3.5096716199824676 0.41986306446118626 PMFIVNTNVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 PMFIVNTNVPR 11 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 118.18 0.0019407 0.0 157050.0 131950.0 138580.0 121830.0 156230.0 200330.0 170160.0 130810.0 227000.0 170630.0 False True 156204.46024989526 136341.87598454056 158090.85944104666 137253.66550848857 176124.9644522416 186481.65862609548 161928.71072567537 140571.70643972082 171058.89164416105 159740.24731630753 0.9778653963179929 0.8535223794574763 0.9896745629046457 0.8592303305797915 1.1025710014301535 1.1674055960163645 1.013700137855893 0.8800018079436775 1.070856559433272 1.0 17.285368326874153 3.243356179984432 24.999915621409688 1.0268893463027777 0.9202910742566981 0.3333691180951418 0.08135967201141348 176.5410057292498 920324.9932096784 0.025419840722554973 0.03333653951375346 1751.2823873058796 -3.243356179984432 -0.10659827204607963 PMIHELLTEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 PMIHELLTEGR 11 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 112.94 0.0014589 336430000.0 229700.0 236660.0 202820.0 227450.0 219760.0 268690.0 268160.0 207500.0 333820.0 266010.0 False True 228463.3207220694 244537.08503600923 231375.29305695713 256245.1466790263 247745.1333804298 250116.09272822647 255188.0763293201 222984.70366365023 251554.5339588274 249033.0140573812 0.9174017412383234 0.9819464538130032 0.9290948588994894 1.0289605482588076 0.9948284741208864 1.0043491369003619 1.0247158486003813 0.8954021799385642 1.010125243478221 1.0 17.925977486046012 6.063937313362103 1.0107687539449945 0.9834369119359012 0.15308850880791075 0.2112201528300116 0.03988698437838018 42.7487748485523 4.048314002677371 0.012370217026832282 69.12065773521863 1158610.1087749691 -6.063937313362103 -0.8303484031279904 PNS(ph)SPSPSPGQASETPHPRPS ddPTM_BT-474_Trastuzumab_2h_R1 1 PNSSPSPSPGQASETPHPRPS 21 1 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 1 PNS(0.36)S(0.242)PS(0.36)PS(0.039)PGQASETPHPRPS 113.13 3.2778000000000004e-05 0.0 74266.0 66789.0 65946.0 68538.0 70584.0 80557.0 70202.0 73196.0 81921.0 76284.0 True False 73866.16010772837 69012.03149019693 75230.62358709243 77214.90377264045 79572.4540158548 74988.28420078056 66806.06106231698 78658.2572017568 61732.66723515997 71415.48980998181 1.03431566883133 0.9663454199336885 1.0534216566638652 1.0812066678824073 1.1142184171469882 1.0500282837841628 0.9354561768052094 1.1014173173221402 0.8644156526744362 1.0 16.123949404061005 1.2410846280336352 24.9999999996206 0.9322078324127708 1.0415549832639501 0.34402709364339534 0.06066776354169707 68.89721845414584 682476.2991509349 0.0444630408098288 0.014534769709562561 17.42146320609387 -1.2410846280336352 0.1093471508511793 PPQDQS(ph)VIK ddPTM_BT-474_Trastuzumab_2h_R1 4 PPQDQSVIK 9 0 Q58EX2-2;Q58EX2-3;Q58EX2;Q58EX2-4 Q58EX2-2 SDK2 Protein sidekick-2 1 PPQDQS(1)VIK;PPQDQS(1)VIK;PPQDQS(1)VIK;PPQDQS(1)VIK 107.21 0.0029489 270801000.0 721323.0 1013980.0 869540.0 899710.0 852270.0 867040.0 852930.0 827140.0 952300.0 1006200.0 True False 717439.4771145192 1047729.711336146 991963.6738228304 1013613.1937506566 960801.5326999414 807103.5655926219 811670.5173909863 888865.3869318155 717618.4251662316 941983.4545488391 0.7616264103684658 1.1122591445493635 1.0530584895442026 1.0760413984512331 1.0199770792790783 0.8568128895418682 0.8616611188566301 0.9436104027512199 0.7618163797897419 1.0 19.84534219430675 2.745457298080064 24.091561751837883 0.8846233359719256 1.0172359328426233 0.23808539458778677 0.10596602074654059 433.4672120320692 1514191.4273658157 0.03133372091135826 0.03254692112860015 556.489914806201 -2.745457298080064 0.1326125968706977 PQSPVIQAAAVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 PQSPVIQAAAVSPK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 PQSPVIQAAAVS(1)PK;PQSPVIQAAAVS(1)PK;PQSPVIQAAAVS(1)PK;PQSPVIQAAAVS(1)PK 171.98 3.0735000000000007e-06 861930000.0 1697970.0 929430.0 849410.0 788930.0 796390.0 1326010.0 1228830.0 1203160.0 1992660.0 1109780.0 True False 1688828.3181822002 960365.5156977002 968999.544795928 888808.4571091845 897805.5459266495 1234346.0497917878 1169386.7983135378 1292945.9087226866 1501595.6432760074 1038952.8902695405 1.6255100053131952 0.9243590587139596 0.9326693768997898 0.8554848496341318 0.8641446155404866 1.1880673910744457 1.1255436211454768 1.2444701976691661 1.445297142285673 1.0 19.986698808248327 2.5726929229596025 8.163379249859048 1.2147884249056426 1.0177326275186533 0.10139504000753918 0.23310855315124984 0.6311557413704242 48.694748360287576 0.07546625423421251 0.0710306784600181 373.8461590145982 -2.5726929229596025 -0.1970557973869893 PQYQTWEEFSR ddPTM_BT-474_Trastuzumab_2h_R1 7 PQYQTWEEFSR 11 0 P49458;Q6P2S0;Q659G3;E9PE20;P49458-2 P49458 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein 0 ;;;;;; 220.87 4.4014e-08 2647052000.0 1628825.0 1282848.0 1132031.0 1090035.0 1140238.0 1378245.0 1417065.0 1413080.0 1831140.0 1718708.0 False True 1620055.587179471 1325546.8201820091 1291411.1250101582 1228033.3192361922 1285440.550579881 1282970.1671897525 1348516.152236006 1518531.2050748465 1379880.0830188938 1609018.5839800516 1.0068594628485388 0.8238231884824788 0.8026079610688753 0.7632188536931263 0.7988972677992499 0.7973619322756428 0.8380985562642357 0.9437623780072344 0.8575911408093478 1.0 20.617749558443972 1.2464187919249807 0.9358006963980319 0.9847530945385111 0.8258695513434368 0.3120995631223059 0.06948737018093981 0.5882259554553467 1.1062574527418765 0.06577770392600009 0.023402550584989346 17.63675946516328 -1.2464187919249807 -0.15888354319507436 PRPDPSPEIEGDLQPATHGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 PRPDPSPEIEGDLQPATHGSR 21 1 P51970 P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 0 93.572 0.001022 94859000.0 32079.0 49532.0 54083.0 49000.0 57768.0 93826.0 59642.0 54383.0 61377.0 61150.0 False True 31906.290228311966 51180.64267727373 61697.416302136924 55203.39497591678 65124.412382238224 87340.02946264694 56756.8886054344 58441.335611278504 46251.460759663714 57247.35464685105 0.5573408662310478 0.8940263352428806 1.0777339264449428 0.964295997892949 1.1375968860741141 1.5256605305421074 0.9914325116952172 1.020856526415813 0.8079231091983361 1.0 15.804921408548633 4.787809713193082 1.5744855949790795 1.079281299553545 0.31314372728363593 0.4381818030086593 0.17531914469495874 1.155656745131221 2.4733639803931666 0.048786111496421 1.4119130971198874 61349.3143287119 -4.787809713193082 -0.7661375722699091 PRPPGRPVS(ph)GHGMDSR ddPTM_BT-474_Trastuzumab_2h_R1 6 PRPPGRPVSGHGMDSR 16 2 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR 111.57 0.00042081 1684448000.0 479065.0 393422.0 401014.0 445903.0 511485.0 741535.0 753111.0 580937.0 938745.0 715108.0 True False 476485.76726912503 406516.81344137905 457473.2855238267 502354.27408053546 576619.5829408865 690274.4308356302 716680.1437665959 624289.4688783124 707403.8732885362 669469.1952052398 0.7117366574619588 0.6072225822380861 0.6833373197755256 0.7503769817616899 0.8613086114651051 1.0310772112882836 1.070519971493061 0.9325141072203081 1.0566638141903852 1.0 19.35265814769052 3.1486314675812985 1.7456817138032061 1.012851476899805 0.6629123134080482 0.9226476715628168 0.04528628389862057 0.08864821603784359 0.5571956675959152 0.015493571140965107 0.020481070614922405 1408.093415263009 -3.1486314675812985 -0.3499391634917567 PRPS(ph)PSSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 PRPSPSSTR 9 1 M0QZR4;Q92888;Q92888-3;M0QYC1;Q92888-2;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 PRPS(0.875)PS(0.094)S(0.022)T(0.009)R;PRPS(0.816)PS(0.176)S(0.008)TR 97.463 0.0040418 182680000.0 194978.0 150780.0 161880.0 158952.0 143656.0 152620.0 169231.0 157606.0 225740.0 153099.0 True False 193928.26011209234 155798.6211515651 184671.29691381627 179075.30690228418 161949.74008417848 142069.73862883597 161044.6500047998 169367.3600270518 170109.40176102583 143328.09074535163 1.3530373502054185 1.0870068828892003 1.2884515237276017 1.2494083048970768 1.1299232358568956 0.9912204780655919 1.1236084229359118 1.1816759655855855 1.1868531903020747 1.0 17.128961864269876 3.1902560857733686 5.824469248393908 1.1113151050964822 1.236429973577415 0.3852390346553892 0.08751525676914036 0.23332646424122877 17.905464444367684 0.02540042451739334 0.030986336109998742 1549.7301623246876 -3.1902560857733686 0.12511486848093267 PRPS(ph)PSSTREPLLSSSENGNGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 PRPSPSSTREPLLSSSENGNGGR 23 2 M0QZR4;Q92888;Q92888-3;M0QYC1;Q92888-2;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 PRPS(0.537)PS(0.163)S(0.163)T(0.13)REPLLS(0.003)S(0.003)S(0.003)ENGNGGR;PRPS(0.862)PS(0.088)S(0.025)T(0.025)REPLLSSSENGNGGR 79.512 0.0063991 453380000.0 88767.0 94483.0 97547.0 94083.0 98265.0 116334.0 126698.0 104122.0 130509.0 114249.0 True False 88289.08833494088 97627.80953882032 111280.76970627642 105993.89815345257 110778.46528771368 108292.10440077986 120569.13370663853 111892.1123608029 98346.80568100353 106957.53100651002 0.8254592968265799 0.9127717199537652 1.040420143014551 0.9909905095602964 1.0357238452051694 1.012477600985279 1.1272617512019798 1.0461358943858992 0.9194939781754836 1.0 16.706678542383706 4.455174472739486 2.4377365052874307 1.0295823522533036 0.8225568247139804 0.6118612706066859 0.05031671844771068 0.2112253544947913 2.210032591174847 0.01302103728715877 0.07047159516094026 28521.638609178422 -4.455174472739486 -0.20702552753932324 PS(ph)DWWVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 PSDWWVVK 8 0 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 PS(1)DWWVVK 63.159 0.078751 244750000.0 168660.0 310130.0 241640.0 323690.0 257410.0 199770.0 223270.0 181710.0 137030.0 289000.0 True False 167751.95329988768 320452.48957245616 275660.81162746815 364669.1208113168 290189.6377113962 185960.37010799744 212469.57712577298 195270.1229046836 103260.79260792687 270555.77257465204 0.6200272561310862 1.1844230360453187 1.0188687123702287 1.3478519321213038 1.0725686425017111 0.6873273053402956 0.7853078687025543 0.7217370416696781 0.38166176099397414 1.0 18.04556649740929 2.740289376899408 24.067560602329245 0.7061336709172916 1.0712423794093069 0.35768178267402884 0.2222988299350299 93.81868205156145 1306136.5107934605 0.06739502785878608 0.06814151389308526 549.9071631676442 -2.740289376899408 0.36510870849201527 PS(ph)PS(ph)QWK ddPTM_BT-474_Trastuzumab_2h_R1 1 PSPSQWK 7 0 F5H142;H3BM22;Q6IMN6-6;Q6IMN6-4;Q6IMN6-10;Q6IMN6-7;Q6IMN6-3;Q6IMN6-2;Q6IMN6-9;Q6IMN6 F5H142 CAPRIN2 Caprin-2 2 PS(1)PS(1)QWK 50.966 0.08164600000000001 512730000.0 323650.0 513680.0 432880.0 404530.0 376450.0 381680.0 377060.0 339210.0 320500.0 413600.0 True False 321907.50436089543 530777.5282738832 493825.74133958964 455743.45652260515 424388.67610603734 355295.3599780767 358820.1672909205 364523.5726734783 241517.0694799715 387203.6938992249 0.8313647556386078 1.3707966546724766 1.275364231076046 1.1770121610493174 1.0960346783687718 0.9175928989730847 0.9266961367995327 0.9414258655506281 0.623746811524039 1.0 18.562733190336182 2.7958590498116287 1.8268524550127678 0.8748399271412878 1.1882784448922115 0.41864295638301674 0.1593740164852937 0.32535326380834473 2.1548426211493537 0.05769226607519394 0.058956659970365394 624.9698260236183 -2.7958590498116287 0.3134385177509237 PS(ph)SPALYFTHDASLVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 PSSPALYFTHDASLVHK 17 0 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 PS(0.5)S(0.5)PALYFTHDASLVHK 178.43 1.6255e-09 293870000.0 210990.0 139020.0 139280.0 120320.0 125460.0 194750.0 171560.0 119460.0 251010.0 167590.0 True False 209854.0532831925 143647.19666063524 158889.4133565378 135552.4996633126 141436.58734032017 181287.39089218847 163260.98737715598 128374.71180558861 189151.94886167758 156894.2627189825 1.337550842500007 0.9155669185808634 1.0127165302476921 0.8639735916035649 0.9014771151552623 1.1554749533250757 1.0405797162231298 0.8182243861620612 1.2056014387248353 1.0 17.25943307149611 4.744838671150675 24.66544031472803 0.9788504889850335 1.3375510358223877 0.4391128332877693 0.1170494808662077 534.401859000046 2099507.0809211805 0.027335858732600544 0.2547042688378935 55569.779197447846 -4.744838671150675 0.3587005468373542 PSADLTNSSAPS(ph)PSHK ddPTM_BT-474_Trastuzumab_2h_R1 3 PSADLTNSSAPSPSHK 16 0 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 PSADLTNSS(0.002)APS(0.791)PS(0.207)HK;PSADLTNS(0.002)S(0.005)APS(0.992)PS(0.001)HK;PSADLTNSS(0.001)APS(0.915)PS(0.084)HK 156.51 1.0045e-07 1522480000.0 1051040.0 624130.0 723710.0 573200.0 573870.0 1037340.0 905630.0 840840.0 1631950.0 982210.0 True False 1045381.3174215214 644903.7897554477 825602.0773999124 645767.0612284805 646948.9429060225 965631.1274357018 861821.2170574366 903587.7504990067 1229777.7895096417 919524.5168877114 1.1368716094267872 0.7013448558590208 0.8978576016595016 0.7022836796284563 0.7035689979161538 1.0501417957881602 0.9372465891115318 0.9826684703931056 1.337406199534555 1.0 19.810528515545784 1.9042871273777842 1.2166112269647038 1.136870301460595 0.8332562420482674 0.3351711683328238 0.16001765553749792 0.5059252642776216 1.3837090016085394 0.12053750102089607 0.0523194633385446 80.22082562356572 -1.9042871273777842 -0.30361405941232755 PSADLTNSSAPSPS(ph)HK ddPTM_BT-474_Trastuzumab_2h_R1 1 PSADLTNSSAPSPSHK 16 0 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 PSADLTNSSAPS(0.385)PS(0.614)HK 100.59 0.0012904 358990000.0 178750.0 128180.0 112290.0 104710.0 107290.0 166610.0 182710.0 160510.0 290490.0 178280.0 True False 177787.62986099187 132446.3938135536 128099.4559578231 117966.27526384188 120952.74554234777 155092.64285775385 173871.6192800194 172488.0712532651 218902.63186657426 166902.01776681302 1.0652215727516707 0.7935577747094761 0.767512925678329 0.7067995752373607 0.7246931293025873 0.9292436660318952 1.041758641426037 1.0334690590395177 1.3115637234081485 1.0 17.34864187074654 2.245688026586464 1.8110414369401582 1.1157933200715804 0.8032106728770485 0.5523099394576676 0.12125517398835652 0.26527823788223287 1.7451155027856131 0.06224286038310949 0.03971190856701988 176.0710793643236 -2.245688026586464 -0.3125826471945319 PSATSHSGSGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 PSATSHSGSGSK 12 0 Q14444-2;Q14444;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 ;;; 105.46 0.0020276 166619000.0 244491.0 215024.0 225043.0 207927.0 227431.0 176974.0 283749.0 258278.0 376619.0 298389.0 False True 243174.68762150346 222180.9438552472 256727.09829117858 234250.5368807645 256392.9897608509 164740.20393198563 270022.9768435568 277552.0158691095 283806.2938860453 279345.55855632434 0.8705156755605701 0.7953623641037735 0.9190305355773709 0.8385690400498444 0.9178344953322553 0.5897362563535054 0.9666270630506988 0.9935794837888814 1.015968520683752 1.0 18.09169135683828 2.026712615466606 24.998541692745857 0.9968779678512566 0.8258460083961298 0.48513656482304535 0.08738686194468327 182.63711401835374 170917.0138667923 0.03177268302850382 0.023465115400837944 106.34390786264998 -2.026712615466606 -0.17103195945512684 PSGGFVISGVLS(ph)PDTISSK ddPTM_BT-474_Trastuzumab_2h_R1 2 PSGGFVISGVLSPDTISSK 19 0 Q03188;H0Y8J2;H0Y9W1 Q03188 CENPC Centromere protein C 1 PSGGFVISGVLS(1)PDTISSK;PSGGFVISGVLS(1)PDTISSK 276.4 1.8944e-39 242820000.0 571030.0 430750.0 393470.0 342040.0 343990.0 637830.0 623760.0 534780.0 899270.0 580070.0 True False 567955.6379273966 445087.25335612684 448867.15589745046 385342.2289298483 387795.0875115308 593738.3133903196 593586.345805402 574687.9991578169 677656.9581006374 543049.4359770876 1.0458635997024768 0.8196072472762977 0.826567760060042 0.7095895942447985 0.7141064179797669 1.09334118416315 1.0930613430016465 1.0582609263258018 1.247873422207604 1.0 19.05072401278425 2.724083871074859 24.1273966757936 1.0979364235048479 0.8168315871575089 0.6361521396444952 0.1040687992460419 323.1451390776859 538562.6217513623 0.03404516228843823 0.03224563167187009 529.7657425254516 -2.724083871074859 -0.28110483634733896 PSHLTNK ddPTM_BT-474_Trastuzumab_2h_R1 4 PSHLTNK 7 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;; 129.39 0.0036649 706145000.0 1420840.0 1273330.0 1291680.0 1089707.0 1143041.0 1156083.0 1432230.0 1254580.0 1847830.0 1276840.0 False True 1413190.3553101644 1315712.0193057607 1473537.3165161724 1227663.7944698231 1288600.4960151995 1076165.703336656 1362947.5632500814 1348203.1302281565 1392457.0561534371 1195350.9780422796 1.182238841369133 1.1006909631350332 1.2327235628564093 1.0270320742786898 1.0780101574230876 0.9002926530408478 1.140207008892307 1.1278721940197136 1.1648938945396385 1.0 20.189002852748693 3.729201899335684 24.97093129665296 1.0701237601916227 1.1647651086465263 0.28366773891467023 0.07869951867565743 984.356629026958 2626460.7308484283 0.021708578451993532 0.0341413628367699 5360.4580214409625 -3.729201899335684 0.09464134845490357 PSHLTNKFEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 PSHLTNKFEDK 11 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 193.23 6.2755e-07 519560000.0 963260.0 927490.0 852680.0 804400.0 869850.0 1217300.0 1238100.0 991860.0 2105500.0 1091200.0 False True 958073.9151882468 958360.9439704551 972729.9323725774 906236.957523009 980620.2414951185 1133150.916215976 1178208.3729986984 1065877.6297630277 1586627.737254541 1021558.6817766782 0.9378549977393176 0.9381359691483306 0.9522017185354652 0.8871119923790345 0.9599255128346027 1.1092372238912585 1.153343801013543 1.0433836536039913 1.5531440000050745 1.0 19.96234064904542 2.4692927766652586 1.1783981205865974 1.2026483199190892 0.924999197647184 0.42772174963334053 0.13929893709372082 0.46649872016446287 1.3053104619826938 0.07694537074370156 0.054711748044481194 294.64072648015593 -2.4692927766652586 -0.2776491222719052 PSMS(ph)PTPLDR ddPTM_BT-474_Trastuzumab_2h_R1 9 PSMSPTPLDR 10 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 PSMS(0.973)PT(0.026)PLDR;PSMS(0.992)PT(0.007)PLDR;PS(0.362)MS(0.577)PT(0.061)PLDR;PSMS(0.5)PT(0.5)PLDR;PSMS(0.5)PT(0.5)PLDR;PSMS(0.901)PT(0.099)PLDR;PS(0.007)MS(0.962)PT(0.031)PLDR;PSMS(0.726)PT(0.274)PLDR;PSMS(0.5)PT(0.5)PLDR 211.64 5.7819e-08 11992560000.0 6222800.0 5417170.0 4671400.0 4346000.0 4625290.0 5599330.0 5656300.0 5171940.0 7132680.0 5217120.0 True False 6189297.1362180775 5597477.228701579 5329092.515463313 4896203.154394586 5214293.265258318 5212261.496505048 5382683.15983566 5557896.425379177 5374926.587015297 4884158.934998849 1.2672186181057468 1.14604731401987 1.0910972772151544 1.002465976139603 1.067592872110241 1.0671768805791895 1.1020696155615435 1.137943400152781 1.1004815073685892 1.0 22.219678717029485 4.643498802673023 2.116442367186469 1.0779485777836513 1.2973080965533608 0.6838420407031792 0.04101722018175929 0.3450079655434605 2.022166184080544 0.011373883980221988 0.13333541830479334 44004.67346486774 -4.643498802673023 0.2193595187697095 PSPAQQTDRS(ph)SPVRPSSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 PSPAQQTDRSSPVRPSSEK 19 2 B3KV94;A0A3B3ISE6;A0A3B3ITA8;A0A3B3ITJ7;A0A3B3ITE7;A0A3B3IT25;A0A3B3IS40;Q9UGL1;Q9UGL1-2 B3KV94 KDM5B Lysine-specific demethylase 5B 1 PSPAQQTDRS(0.5)S(0.5)PVRPSSEK;PSPAQQTDRS(0.5)S(0.5)PVRPSSEK 164.05 1.2785e-11 898730000.0 482580.0 319420.0 293240.0 299770.0 317570.0 474510.0 481600.0 407630.0 652970.0 446750.0 True False 479981.84289967857 330051.7016065325 334525.64311222825 337720.8512638897 358010.65711513965 441708.2405763923 458303.16810933885 438049.4205031992 492054.2928497258 418238.0325180821 1.1476283971829535 0.7891479873778887 0.799845105186041 0.807484793361753 0.855997372978416 1.0561168670314445 1.0957950556290563 1.0473686906612458 1.1764934190399154 1.0 18.6739647339501 2.7053747159385684 5.212863839247067 1.0789275533230447 0.8660658486636074 0.4609607178225791 0.10507170467567922 0.16550824831483438 12.407605375586517 0.03346286432162209 0.03225720518018023 507.4283364011082 -2.7053747159385684 -0.21286170465943732 PSPGTPTS(ph)PSNLTSGLK ddPTM_BT-474_Trastuzumab_2h_R1 3 PSPGTPTSPSNLTSGLK 17 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 PSPGT(0.003)PT(0.021)S(0.969)PS(0.008)NLTSGLK;PSPGTPT(0.081)S(0.835)PS(0.083)NLT(0.001)SGLK;PSPGTPT(0.004)S(0.989)PS(0.006)NLTSGLK 176.04 1.2111e-09 653010000.0 1874160.0 1187000.0 1093570.0 1013960.0 1035620.0 1566760.0 1425760.0 1419610.0 2128920.0 1419960.0 True False 1864069.7307987525 1226508.5774433485 1247535.1505191617 1142327.2320363377 1167500.0683993488 1458453.568956331 1356790.54186788 1525548.5068335175 1604276.1920664615 1329336.9371110818 1.4022552738583742 0.9226468799616746 0.9384642190341209 0.8593210646195132 0.878257449865617 1.0971285971529878 1.0206521040605856 1.1476010815954931 1.2068243552705895 1.0 20.342275389431332 2.105681028054994 1.8591487889583236 1.1276885315796148 0.9902133356602606 0.06709011085379779 0.15521033378038362 0.766228466211823 5.09682246177947 0.08651882905409922 0.048439142718169896 127.55016596969676 -2.105681028054994 -0.1374751959193542 PSSLMNPSLSKPNIS(ph)PSHSRPPGGSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 PSSLMNPSLSKPNISPSHSRPPGGSDK 27 2 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 PSSLMNPSLSKPNIS(0.993)PS(0.006)HSRPPGGSDK;PSSLMNPSLS(0.005)KPNIS(0.921)PS(0.072)HS(0.001)RPPGGS(0.001)DK 208.37 1.0766e-25 2298240000.0 1500530.0 876010.0 759700.0 750020.0 720540.0 1285110.0 1250690.0 1069040.0 2076850.0 1150110.0 True False 1492451.313204556 905167.4632907723 866659.1565692262 844972.4550987165 812296.4980248224 1196273.3705235461 1190189.3466002273 1148817.1932751252 1565038.1458642108 1076708.99514129 1.386123195718924 0.8406797634044032 0.804914940322849 0.784773284993162 0.7544252919687271 1.1110461377417642 1.1053955636769301 1.0669709257183024 1.4535386561517865 1.0 20.03819695105787 2.6030678639458933 6.469099352767143 1.1447527439236487 0.8973976185376491 0.24933788713522143 0.20195017712565877 0.3434378381981982 16.671615792479717 0.06571501044172039 0.06176891334358021 400.9293629612722 -2.6030678639458933 -0.24735512538599957 PSSS(ph)PVIFAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 6 PSSSPVIFAGGQDR 14 0 Q15366;Q15366-6;H3BSS4;Q15366-2;Q15366-3 Q15366;Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 PSSS(1)PVIFAGGQDR;PSS(0.003)S(0.997)PVIFAGGQDR;PSS(0.017)S(0.983)PVIFAGGQDR;PSS(0.035)S(0.965)PVIFAGGQDR;PS(0.001)S(0.279)S(0.719)PVIFAGGQDR;PSS(0.003)S(0.997)PVIFAGGQDR 307.7 3.9492e-46 4241020000.0 5877130.0 4377070.0 3916640.0 3722200.0 3772130.0 5096220.0 4866810.0 4669480.0 6192750.0 4880830.0 True False 5845488.185090528 4522758.128955306 4468068.867954834 4193430.1383542395 4252488.396333829 4743930.306611499 4631383.807280339 5017940.30873899 4666629.741098577 4569331.250711201 1.2792874633855222 0.9898074533885793 0.9778386864072056 0.9177338888927229 0.9306588126373949 1.0382110742951984 1.0135802272070953 1.098178274546842 1.0212938141379513 1.0 22.123551602904815 4.740198849700356 24.753661913402123 1.0027107365003332 1.2792875695807342 0.7463900559360326 0.0490334678018636 74.34737136246663 1123273.8751095254 0.013852534055847023 0.08881112203343827 54979.254884658454 -4.740198849700356 0.27657683308040104 PSTQPRPDS(ph)WGEDNWEGLETDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 PSTQPRPDSWGEDNWEGLETDSR 23 1 E9PS17;Q96KG9-2;Q96KG9;Q96KG9-3;E9PPN3;H0YDH0 E9PS17 SCYL1 N-terminal kinase-like protein 1 PSTQPRPDS(1)WGEDNWEGLETDSR;PSTQPRPDS(1)WGEDNWEGLETDSR;PSTQPRPDS(1)WGEDNWEGLETDSR;PSTQPRPDS(1)WGEDNWEGLETDSR 277.04 5.3251e-52 2549360000.0 847260.0 729420.0 716930.0 706130.0 757440.0 1091890.0 1098860.0 1041610.0 1373540.0 1125490.0 True False 842698.4462994362 753698.3037562992 817867.5123327295 795525.9855988607 853895.4943013866 1016410.2143325892 1045703.943747153 1119340.2273884092 1035049.4714930425 1053660.2646195332 0.7997819359769884 0.7153143466299857 0.7762155789637315 0.7550118499401869 0.8104087465134886 0.9646470009947706 0.9924488745191002 1.062335047618591 0.9823370077135718 1.0 20.006978338046906 2.72273371114712 1.9920947416437016 1.0199734255155861 0.7577942817505827 0.9429953817146411 0.028489056908542698 0.06506704081218465 0.510282366200848 0.010214060421584731 0.009965452191404798 528.1213334353488 -2.72273371114712 -0.2621791437650034 PSTQPRPDSWGEDNWEGLETDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 PSTQPRPDSWGEDNWEGLETDSR 23 1 E9PS17;Q96KG9-2;Q96KG9;Q96KG9-3;E9PPN3;H0YDH0 E9PS17 SCYL1 N-terminal kinase-like protein 0 83.60600000000002 0.0070107 367020000.0 69324.0 78375.0 54685.0 59198.0 46162.0 59609.0 54648.0 59767.0 88681.0 70453.0 False True 68950.76728662055 80983.66449631195 62384.17266945914 66692.46073029228 52040.45707638972 55488.37013449275 52004.46746436706 64227.11703067656 66826.75581451919 65956.62922215207 1.0453955591694015 1.2278320686090023 0.9458362776445056 1.0111562934130824 0.7890102585611138 0.8412857174310618 0.7884646028408762 0.9737780385099692 1.0131924054129025 1.0 16.00923004987202 4.121726073431261 5.734319905238228 0.9088844019889405 1.1348780780124494 0.4699979377207768 0.09182455363544838 0.16207165733739143 7.415739201966469 0.023541636293986142 0.0524871404296541 13235.064844068589 -4.121726073431261 0.22599367602350895 PSVSFLQVHSESQS(ph)PLHDI ddPTM_BT-474_Trastuzumab_2h_R1 3 PSVSFLQVHSESQSPLHDI 19 0 Q68DY1-3 Q68DY1-3 1 PSVSFLQVHSES(0.092)QS(0.908)PLHDI;PSVSFLQVHSES(0.111)QS(0.888)PLHDI;PSVSFLQVHSES(0.017)QS(0.983)PLHDI 223.15 1.4605e-19 279379000.0 217894.0 198275.0 190583.0 197095.0 189228.0 235003.0 223849.0 188534.0 296464.0 214335.0 True False 216720.88291429912 204874.46351523162 217415.42982286777 222047.2067913946 213325.06415777205 218757.7957475584 213020.56868377823 202603.3644362537 223404.41961407263 200655.95679857436 1.080062044367072 1.0210235807795727 1.0835234263247773 1.1066066033329554 1.0631384562976887 1.090213314559883 1.061620956000902 1.0097052072051578 1.1133704833808347 1.0 17.61436445994022 -1.3260931352744072 3.49880230676623 0.9997115173152827 1.0658053347168324 0.2936404532279512 0.0319646242137392 61669.67485503215 7592105.503772399 3544.1190627296737 0.007633707223471529 0.04719618173042995 1.3260931352744072 0.06609381740154963 PT(ph)SPEKFSVPHVCAR ddPTM_BT-474_Trastuzumab_2h_R1 1 PTSPEKFSVPHVCAR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 PT(0.564)S(0.435)PEKFS(0.001)VPHVCAR 136.2 3.929300000000001e-05 441500000.0 345160.0 272800.0 238340.0 266100.0 278860.0 355170.0 393190.0 334360.0 570870.0 337080.0 True False 343301.69691088103 281879.9830889175 271896.20031158265 299788.2327161524 314371.1680672854 330617.9338802499 374169.89756833744 359311.64104567753 430186.7377660884 315567.265811293 1.087887541276772 0.8932484881289295 0.8616109139601782 0.9499978774586324 0.9962096900610634 1.0476940091687366 1.1857056738961271 1.1386213970004841 1.3632172420042359 1.0 18.26758803498144 2.515233162325926 1.5956547428945738 1.1856761807985614 0.9405851350679909 0.5007815485374949 0.10022421570293756 0.2867210712072062 1.477583342073323 0.04361463985748091 0.03482987234944644 327.5164834572625 -2.515233162325926 -0.2450910457305705 PTHSGGGGGGGGGGGGGGGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 PTHSGGGGGGGGGGGGGGGGR 21 0 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 0 ;;; 185.28 3.6535e-17 76416000.0 61284.1 49156.0 50160.3 49582.1 51873.2 42930.1 54967.0 49937.5 65173.6 53815.4 False True 60954.15321490362 50792.12774457054 57222.43423885656 55859.18877623276 58478.9445434552 39962.44323358534 52308.03621566873 53664.0898274869 49112.43956149732 50380.85509831807 1.2098673810905312 1.0081632724464458 1.1357972016788356 1.1087384020621274 1.1607374354669793 0.7932069266311333 1.0382522510503203 1.0651683009897632 0.9748234615243143 1.0 15.620587988236009 PTRPDK ddPTM_BT-474_Trastuzumab_2h_R1 2 PTRPDK 6 1 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 81.78399999999998 0.055602 740280000.0 827200.0 598570.0 558100.0 549750.0 563260.0 565390.0 759170.0 689890.0 1108470.0 742310.0 False True 822746.4471105598 618493.0406067941 636675.628907839 619348.2936328622 634987.8222964182 526305.920084901 722446.0467889678 741373.0949904374 835302.4212370177 694935.1402764359 1.1839183247853637 0.8900011019168865 0.9161655412252976 0.891231796663058 0.9137368158470568 0.7573453831612884 1.0395877326070868 1.0668234372139092 1.2019861607584639 1.0 19.406518808865656 2.0165133221099123 24.985668032649276 1.0860724471143688 0.9193860252037255 0.32302421677330584 0.10915489275594333 261.6382123345981 395873.0709428093 0.040191371017603415 0.02967616957874052 103.87554660608234 -2.0165133221099123 -0.1666864219106433 PTS(ph)PEKFSVPHVCAR ddPTM_BT-474_Trastuzumab_2h_R1 1 PTSPEKFSVPHVCAR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 PT(0.023)S(0.974)PEKFS(0.002)VPHVCAR 137.61 9.4745e-06 419800000.0 337130.0 270420.0 258980.0 233900.0 245680.0 349360.0 360700.0 299770.0 582870.0 332150.0 True False 335314.9295386641 279420.766227658 295442.1329054865 263511.7160176926 276965.8917405537 325209.565504981 343251.5629921902 322140.3596012168 439229.49855785095 310951.90263207845 1.078349824202273 0.898598027098331 0.9501216439092085 0.8474356123476833 0.8907033190540168 1.0458516662937816 1.1038734932531642 1.0359813105320557 1.4125319537843506 1.0 18.246331919099962 2.2229388646844654 1.4023306349105833 1.1584513017452358 0.9291038363322218 0.3986603915550564 0.11800249535829685 0.4235707488270429 1.622528305676129 0.06899842058818116 0.039826426564707494 167.08553926675458 -2.2229388646844654 -0.22934746541301398 PTSS(ph)PAKGPPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 PTSSPAKGPPQK 12 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 PT(0.01)S(0.065)S(0.925)PAKGPPQK 71.531 0.026849 440920000.0 555450.0 289740.0 252690.0 226370.0 245050.0 469660.0 452100.0 406510.0 792220.0 425160.0 True False 552459.5189162967 299383.8207484714 288266.55557914666 255028.4187897608 276255.6649748561 437193.50966072036 430230.19581028254 436845.84041595424 596987.9962041291 398025.92480221076 1.3879988324650658 0.7521716604194636 0.7242406527222911 0.6407331857001297 0.6940645012310054 1.0984046073832325 1.0809099834993785 1.0975311234639655 1.4998721414962797 1.0 18.602502875973354 2.6103417464098273 5.005616855026601 1.1571698790539655 0.8184770118005908 0.3168256660566976 0.23176123385168723 0.27678793493500975 10.130475820923579 0.0769170079863835 0.07209249673762401 407.7009715821007 -2.6103417464098273 -0.33869286725337466 PVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 PVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR 41 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 157.42 4.2083e-15 71890000.0 59647.0 54881.0 56312.0 59828.0 50091.0 71005.0 66227.0 35413.0 79812.0 57939.0 False True 59325.867179404675 56707.680908734954 64240.24012732163 67402.21866569697 56469.79193738219 66096.59147779118 63023.34699829156 38055.697883570356 60143.402026007796 54241.28341592648 1.0937401079633238 1.0454708542549767 1.1843421851714377 1.2426368703124406 1.0410850994134362 1.218566142157022 1.1619073707202596 0.7016002477625065 1.1088122964352336 1.0 15.727103694378556 1.7754118507426764 24.999999999989754 0.9064680680495587 1.1421288221701211 0.3919717542326443 0.1147492979542069 36.193891328972704 24564.449783504526 0.05052783376615051 0.028045981251581236 59.62272906035213 -1.7754118507426764 0.23566075412056242 PVIVEPLEQLDDEDGLPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 PVIVEPLEQLDDEDGLPEK 19 0 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 234.22 9.1795e-24 134258000.0 181907.0 115199.0 113510.0 103116.0 105341.0 151301.0 141567.0 146067.0 223348.0 145945.0 False True 180927.6329237676 119033.32907573396 129491.22135339331 116170.47502727841 118755.55194497577 140841.91799424405 134718.86337154248 156967.26125319704 168306.87810986795 136630.66515019914 1.3242095595807315 0.8712050764363893 0.9477464023983387 0.8502518442662291 0.8691720252874922 1.0308221645515334 0.9860075205185087 1.1488435709556248 1.2318382401552894 1.0 17.05992179038636 1.7746893719420058 4.15401811117275 1.1435972833957586 0.967804182625456 0.17654942837051602 0.13888752461637244 0.2968867755802964 10.15850529170925 0.069910855102215 0.0364133156191325 59.523624997649364 -1.7746893719420058 -0.17579310077030263 PVLISTPTPTIVRPGSLPLHLGYDPLHPTLPS(ph)PTSVITQAPPSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 PVLISTPTPTIVRPGSLPLHLGYDPLHPTLPSPTSVITQAPPSNR 45 1 P17544;K7ELQ4;P17544-2;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 PVLISTPTPTIVRPGSLPLHLGYDPLHPT(0.046)LPS(0.894)PT(0.057)S(0.003)VITQAPPSNR;PVLISTPTPTIVRPGSLPLHLGYDPLHPT(0.01)LPS(0.881)PT(0.044)S(0.064)VIT(0.001)QAPPSNR 128.79 5.3611e-10 989730000.0 276270.0 196006.0 221500.0 170622.0 225601.0 286040.0 275160.0 255883.0 298270.0 296070.0 True False 274782.5930164827 202529.94122187092 252685.27468748664 192222.7277057324 254329.95010811082 266266.7280657336 261849.45958672318 274978.2888075459 224765.3551132332 277174.5591217206 0.9913701816183372 0.7306945553142572 0.9116467091646764 0.6935078324461885 0.9175804262627956 0.9606463483136747 0.9447095736940725 0.9920762196893755 0.8109162537335469 1.0 18.080435318083232 3.020806706745636 24.877468791622864 0.9450263730422784 0.8271929281816653 0.2432150531560705 0.09205196808183012 280.66555692213046 335574.39996492735 0.02459988165463176 0.029399907852266895 1049.075408368171 -3.020806706745636 -0.11783344486061309 PVPDS(ph)PVSVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 PVPDSPVSVTR 11 0 G3XAC1;A0A0C4DFT5;Q9BXS9-5;Q9BXS9-7;Q9BXS9-4;Q9BXS9-2;Q9BXS9-3;Q9BXS9 G3XAC1 SLC26A6 Solute carrier family 26 member 6 1 PVPDS(0.989)PVS(0.005)VT(0.007)R;PVPDS(1)PVSVTR 160.56 2.8676e-05 174210000.0 181140.0 194841.0 194647.0 169424.0 216792.0 295620.0 199217.0 153667.0 253416.0 210994.0 True False 180164.76236654609 201326.16490112813 222051.6056979466 190873.06102856583 244399.17617314434 275184.48521462793 189580.11262715596 165134.4118452152 190965.02240042578 197528.18227894828 0.9120964932088441 1.0192275480812978 1.1241515166902436 0.9663079912263652 1.2372876282939975 1.39314037136237 0.9597623510726784 0.8360043105748486 0.9667735519924238 1.0 17.591698978528964 2.0198259035317614 24.973881108365877 0.9114988701058825 1.1106880153894043 0.26903819997376355 0.13461962388894744 287.2215897460782 361799.8030490725 0.05339710616209521 0.039431765026335476 104.67088677309076 -2.0198259035317614 0.19918914528352183 PVSMVPNIPGIPGPPVNS(ph)SGSISPSGHPIPSEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAK 34 0 P17544;K7ELQ4;P17544-2;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 PVSMVPNIPGIPGPPVNS(0.253)S(0.253)GS(0.253)IS(0.201)PS(0.04)GHPIPS(0.001)EAK 100.22 5.2679e-05 160220000.0 128610.0 122160.0 113520.0 108110.0 105780.0 156850.0 154400.0 139210.0 203950.0 156610.0 True False 127917.57804991436 126226.02175272068 129502.62926647146 121796.71491523187 119250.45599281898 146007.32868518494 146931.08213472192 149598.55709405648 153689.25528998525 146615.0157194333 0.8724725596640192 0.8609351581987376 0.8832835343024579 0.830724699769535 0.8133577274310027 0.995855219663099 1.0021557574695723 1.0203494939449624 1.0482504437614317 1.0 17.161673340491074 2.6637902685388646 5.494538405764326 1.015928166853362 0.8533780457737714 0.9265046197790121 0.022720302686868768 0.05808640553284718 3.1612126176367696 0.007922494107735966 0.007481306852516635 461.09484676944896 -2.6637902685388646 -0.16255012107959055 PVSMVPNIPGIPGPPVNSS(ph)GSISPSGHPIPSEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAK 34 0 P17544;K7ELQ4;P17544-2;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 PVSMVPNIPGIPGPPVNS(0.121)S(0.597)GS(0.066)IS(0.179)PS(0.036)GHPIPSEAK 168.32 1.1884e-14 123190000.0 182910.0 159220.0 132380.0 141640.0 154300.0 213540.0 198370.0 187880.0 255830.0 203760.0 True False 181925.2328832113 164519.54144947763 151017.95333241278 159571.60947732377 173949.19039224784 198778.4824190907 188774.0852530102 201900.55963530875 192784.12444636849 190755.86235228754 0.9537071660069464 0.8624612602764642 0.7916818464719744 0.8365227024196364 0.9118943357609572 1.0420570040043486 0.9896109242733658 1.058423878278714 1.010632764147165 1.0 17.54136786940808 2.895732464300986 3.4244234231208996 1.0240501237690793 0.8570741816430598 0.7616165520740699 0.042244127559539366 0.11703742868896028 2.561630768507659 0.01385438512428442 0.015045627440909983 786.5611001313667 -2.895732464300986 -0.16697594212601952 PVSSAASVYAGAGGS(ph)GSR ddPTM_BT-474_Trastuzumab_2h_R1 6 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 1 PVSSAASVYAGAGGS(0.99)GS(0.01)R;PVSSAASVYAGAGGS(0.958)GS(0.042)R;PVSSAASVYAGAGGS(0.995)GS(0.005)R;PVSSAASVYAGAGGS(0.994)GS(0.006)R;PVSSAASVYAGAGGS(0.955)GS(0.045)R;PVSSAASVYAGAGGS(0.97)GS(0.03)R 340.61 2.2580999999999995e-75 5673380000.0 1239150.0 980870.0 959610.0 1000960.0 950460.0 1278540.0 1246150.0 1169670.0 1784540.0 1247840.0 True False 1232478.5540825075 1013517.6650015633 1094714.746920357 1127681.4333692577 1071495.4471822137 1190157.5391594279 1185868.963744711 1256956.7148639136 1344764.0286108868 1168201.7828704265 1.0550219766435764 0.867587843010491 0.9370938847828992 0.9653139122921 0.9172177811177512 1.0187944896258017 1.0151233983146932 1.0759756861313843 1.1511401954092413 1.0 20.155858061010697 2.241596117406119 1.4801830386206523 1.0817595624217122 0.9445340754975363 0.46047066277102944 0.05772937175848867 0.32027911633841305 1.379903982734996 0.03138457099708812 0.01871800850184121 174.41993383445194 -2.241596117406119 -0.1372254869241759 PVSVAGSPLS(ph)PGPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 PVSVAGSPLSPGPVR 15 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 PVSVAGS(0.001)PLS(0.999)PGPVR;PVSVAGSPLS(1)PGPVR 184.44 4.8694e-07 330000000.0 669230.0 552860.0 525340.0 534310.0 535610.0 617850.0 571250.0 538130.0 789960.0 582650.0 True False 665626.9400384423 571261.6108890725 599303.3056628621 601953.5912159621 603816.7586908087 575139.4837624585 543616.4551130822 578287.9931687713 595284.9429216804 545464.778168239 1.2202931640677654 1.047293306100283 1.0987021154242476 1.1035608811212738 1.1069766240792398 1.0544026063311953 0.9966114713009264 1.0601747652905436 1.0913352552675275 1.0 19.05712651607722 2.699425603615452 4.012792695792428 1.0407341564467385 1.1104795040967184 0.3809782647555535 0.04777524873656703 0.2627702573278616 9.319867313009107 0.015233176658507033 0.01475096565249311 500.524803280515 -2.699425603615452 0.06974534764997986 PVT(ph)PTSMCQGSSSGATIK ddPTM_BT-474_Trastuzumab_2h_R1 1 PVTPTSMCQGSSSGATIK 18 0 H7C5W6;F5H619;Q86XA9-2;Q86XA9 H7C5W6 HEATR5A HEAT repeat-containing protein 5A 1 PVT(0.756)PT(0.195)S(0.047)MCQGS(0.001)SSGATIK 113.53 0.00048236 0.0 32364.0 29580.0 25463.0 19554.0 25079.0 31640.0 34234.0 29085.0 40847.0 31949.0 True False 32189.755819978436 30564.552418512394 29047.969071636435 22029.534395083214 28272.661995121045 29452.801272548608 32577.970633420104 31255.47039063742 30780.804171757893 29909.987467084975 1.0762209731917232 1.021884494339817 0.971179580185476 0.7365277039760061 0.9452582361070611 0.9847145975892003 1.0892004107080004 1.044984402786297 1.0291145793902865 1.0 14.868339685487218 2.451076687575747 4.778727609521736 1.046108931832936 0.9449622157440312 0.20039690043833758 0.08463204238045106 0.308961411970427 17.834651635623892 0.03207528537802733 0.02734294979468051 282.5378835328895 -2.451076687575747 -0.1011467160889048 PVVDPSRITR ddPTM_BT-474_Trastuzumab_2h_R1 2 PVVDPSRITR 10 1 Q9NQU5-2;Q9NQU5;H0YL16;H0YL47;H0YK38;H0YM99;H0YK74;H0YK91;H0YLZ9;H0YMS4 Q9NQU5-2 PAK6 Serine/threonine-protein kinase PAK 6 0 ; 72.275 0.04421 924220000.0 114697.0 137654.0 119170.0 120654.0 106880.0 125230.0 122666.0 113424.0 177123.0 136914.0 False True 114079.48409603456 142235.73017639964 135948.10015579133 135928.7840290667 120490.53447260815 116573.14485971117 116732.17695037421 121888.27483540167 133473.40997660215 128176.03130202732 0.8900219716369874 1.1096905461306006 1.0606358987309439 1.0604851987402482 0.9400395163483455 0.9094769410126632 0.9107176729111903 0.9509443660975154 1.0413289335046767 1.0 16.9677669801169 3.2337731311571156 24.996452794183284 0.9504743844942063 1.038059096515812 0.21582610655937806 0.06491265851402411 148.33919517048363 774509.8115740783 0.018269886308329854 0.022510425705962803 1713.062196052913 -3.2337731311571156 0.08758471202160578 PVYAQVGQPDVDLPVS(ph)PSDGVLPNSTHEDGILRPSMK ddPTM_BT-474_Trastuzumab_2h_R1 3 PVYAQVGQPDVDLPVSPSDGVLPNSTHEDGILRPSMK 37 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 PVYAQVGQPDVDLPVS(0.973)PS(0.027)DGVLPNSTHEDGILRPSMK;PVYAQVGQPDVDLPVS(0.995)PS(0.005)DGVLPNSTHEDGILRPSMK;PVYAQVGQPDVDLPVS(0.994)PS(0.006)DGVLPNSTHEDGILRPSMK 233.36 7.6239e-50 732470000.0 210169.0 165972.0 180008.0 151993.0 145709.0 204203.0 178562.0 182752.0 220172.0 170863.0 True False 209037.47345597125 171496.27768780713 205351.56174241577 171235.29821580672 164264.177465094 190086.92725215715 169924.27388691838 196389.8822358528 165913.56075364846 159958.37705682596 1.306824170776062 1.0721306432540403 1.2837812280970047 1.070499097118087 1.026918255157955 1.1883524373633017 1.062303062918374 1.2277561566286983 1.0372295831352858 1.0 17.287337023138434 7.9999999999999964 0.017140776633630603 2.8890213385571453e-11 2.5364073479763043 0.2742452108195612 0.09152506760123862 6484.000819876324 8.5730038652493 490.8519420675955 815.8416591020455 99999999.99999918 -7.9999999999999964 2.536407347947414 PWIS(ph)LPR ddPTM_BT-474_Trastuzumab_2h_R1 3 PWISLPR 7 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 1 PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR 70.919 0.035893 669630000.0 592930.0 1491340.0 1498920.0 1647030.0 1273680.0 777870.0 966070.0 743730.0 475760.0 979680.0 True False 589737.7307607156 1540978.350365932 1709954.9071538008 1855543.829126208 1435875.598307179 724097.6778090204 919337.5033542138 799230.9091844177 358515.32285738306 917155.9836537546 0.6430070143699284 1.6801704157530564 1.8644101304793366 2.0231496737709933 1.5655740396382256 0.789503302289289 1.0023785699917351 0.8714230986101749 0.39089896293227483 1.0 19.80680759288776 2.7503440977986924 7.653121907265215 0.824156808530842 1.6065759713860168 0.48971230834332113 0.37804686726353565 0.13541408387935966 55.201138497409076 0.1202521587976146 0.12302913304022388 562.7870529097073 -2.7503440977986924 0.7824191628551748 PWLHPEQSPLPSLALS(ph)ELSVQHADSLENIDESAVAESR ddPTM_BT-474_Trastuzumab_2h_R1 1 PWLHPEQSPLPSLALSELSVQHADSLENIDESAVAESR 38 0 Q9Y365;F5H8H3;F5GY11 Q9Y365 STARD10 PCTP-like protein 1 PWLHPEQSPLPS(0.15)LALS(0.603)ELS(0.209)VQHADS(0.036)LENIDES(0.001)AVAESR 67.501 0.0076143 489260000.0 17240.0 19062.0 17750.0 17822.0 16777.0 21697.0 18088.0 17643.0 29017.0 20371.0 True False 17147.18175554407 19696.467146777668 20249.045714234227 20078.263372669182 18913.451504930246 20197.137459244237 17213.014337129847 18959.610249338704 21866.149157879387 19070.90533950946 0.8991278311271366 1.0328018935719965 1.0617768456059606 1.0528217205856905 0.9917437671795784 1.0590549897702837 0.9025798214974832 0.9941641422790671 1.1465711128343226 1.0 14.219085712860196 4.741893213360442 24.26305165174847 1.0214476574619096 0.8991277604853861 0.28580663478902935 0.060021797074592646 292.72705580192985 2131056.6383149326 0.014418973948486022 0.10314320533578358 55194.17082283397 -4.741893213360442 -0.12231989697652346 PWLHPEQSPLPSLALSELSVQHADS(ph)LENIDESAVAESR ddPTM_BT-474_Trastuzumab_2h_R1 7 PWLHPEQSPLPSLALSELSVQHADSLENIDESAVAESR 38 0 Q9Y365;F5H8H3;F5GY11 Q9Y365 STARD10 PCTP-like protein 1 PWLHPEQSPLPSLALS(0.002)ELS(0.009)VQHADS(0.989)LENIDESAVAESR;PWLHPEQSPLPSLALSELSVQHADS(0.999)LENIDESAVAESR;PWLHPEQSPLPSLALS(0.019)ELS(0.019)VQHADS(0.962)LENIDESAVAESR;PWLHPEQSPLPSLALSELSVQHADS(1)LENIDESAVAESR;PWLHPEQSPLPSLALSELSVQHADS(1)LENIDESAVAESR;PWLHPEQSPLPSLALSELSVQHADS(1)LENIDESAVAESR;PWLHPEQSPLPSLALSELSVQHADS(1)LENIDESAVAESR 338.3 2.6321999999999988e-129 4968214000.0 193086.49999999997 150043.8 149100.2 144773.0 140254.09999999998 164865.9 147519.69999999998 141964.69999999998 204103.2 150846.40000000002 True False 192046.94373792678 155037.91717960735 170092.212157829 163101.2469560898 158114.62828381936 153469.10838558403 140383.6085310202 152558.8267961397 153804.7012027599 141219.25360589958 1.3599203991962172 1.0978525464542639 1.2044548304475902 1.154950495711132 1.1196393143747219 1.086743517380924 0.9940826406205814 1.080297642854603 1.0891199130111713 1.0 17.10757727117709 7.999999999999999 0.3099673924762916 1.0329159804508166 3.4725756018424043 0.6988964904259427 0.054949910027705294 31.371685303908045 0.44940413357604414 0.051750517955041694 42.90781183175599 99999999.99999979 -7.999999999999999 2.4396596213915878 PYHPPPLFPPS(ph)PQPPDSTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 PYHPPPLFPPSPQPPDSTPR 20 0 P54259 P54259 ATN1 Atrophin-1 1 PYHPPPLFPPS(1)PQPPDSTPR;PYHPPPLFPPS(1)PQPPDSTPR 134.81 5.3431e-06 1032540000.0 1522270.0 1149130.0 1154220.0 1159970.0 1105210.0 1366700.0 1348960.0 1202310.0 2072070.0 1299620.0 True False 1514074.2674600955 1187378.097386246 1316724.143339911 1306822.083065595 1245951.9424071026 1272223.2458657466 1283705.6512723723 1292032.4774064752 1561436.112815493 1216677.138939339 1.244433892117031 0.9759188032589855 1.0822297067961595 1.07409109717048 1.024061275198517 1.0456539415007264 1.0550914537536775 1.0619353615313498 1.2833611011847432 1.0 20.214514950319643 QAAAQPHTEIPEGTTAEEAGIGDTPS(ph)LEDEAAGHVTQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QAAAQPHTEIPEGTTAEEAGIGDTPSLEDEAAGHVTQAR 39 0 P10636-8;P10636-5 P10636-8 MAPT Microtubule-associated protein tau 1 QAAAQPHTEIPEGTTAEEAGIGDTPS(1)LEDEAAGHVTQAR;QAAAQPHTEIPEGTTAEEAGIGDT(0.003)PS(0.997)LEDEAAGHVTQAR 311.17 7.760299999999996e-110 368730000.0 81657.0 99682.0 99715.0 96471.0 90457.0 106631.0 100725.0 96436.0 105040.0 111945.0 True False 81217.3677849455 102999.8551109585 113754.00526168272 108684.21870860558 101976.16276935539 99259.84995237453 95852.54694313381 103632.5440120857 79154.29946388834 104800.57425906372 0.7749706369373389 0.9828176595325336 1.0854330337969942 1.0370574729861843 0.9730496563623166 0.9471307829574226 0.9146185278163584 0.9888547342871358 0.7552849783840058 1.0 16.67728709664074 2.540705478402231 2.4292564320693155 0.9212077114975225 0.9815371299017464 0.061185580514946714 0.09746341875971688 0.8855579847655012 10.407637400330836 0.03704336906389306 0.032512522198780695 347.30055585661427 -2.540705478402231 0.0603294184042239 QAAECHPPVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QAAECHPPVGR 11 0 Q8N3U4;Q8N3U4-2;B1AMT4 Q8N3U4 STAG2 Cohesin subunit SA-2 0 ; 68.44 0.057231 269180000.0 130158.0 137849.0 148775.0 138253.0 147081.0 130234.0 153987.0 147785.0 161454.0 152364.0 False True 129457.24378991325 142437.22063351978 169721.22682451826 155755.8156246006 165810.8935326128 121231.2301178602 146538.06052253488 158813.46713702433 121665.82507275944 142639.99907461676 0.9075802343646437 0.9985783900559976 1.1898571783902983 1.0919504811769019 1.1624431758855738 0.8499104802604678 1.027327968825063 1.113386624841094 0.8529572760941658 1.0 17.12201907315281 2.7657026637324584 24.990012297091848 0.991955804608781 1.073978561640821 0.17172115875124339 0.10512338029826027 1674.4231611650907 1541658.8348378285 0.033547483463562906 0.035574765733526775 583.0457899265595 -2.7657026637324584 0.0820227570320401 QAAPPIELDAVWEDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QAAPPIELDAVWEDIR 16 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;; 194.48 4.816e-10 131133000.0 45043.0 48987.0 47916.0 58261.0 43608.0 46435.0 43228.0 44366.0 54790.0 58697.0 False True 44800.49349274776 50617.50268173316 54662.15630666188 65636.83662636501 49161.220315133745 43225.05774623249 41136.89649300359 47676.81620598319 41287.7386483858 54950.90720697004 0.8152821449154384 0.9211404370647547 0.9947452932993336 1.194463202930334 0.8946389207000767 0.7866122679909053 0.7486117806583862 0.8676256431292513 0.7513568155094773 1.0 15.745855678962222 3.0040037628874874 24.999926473349852 0.8217926092033578 0.9863675678881327 0.28967453396100273 0.11059458051692053 138.7281116426602 866220.6190513694 0.032318574870631535 0.03846915440419756 1009.2616306536185 -3.0040037628874874 0.1645749586847749 QAAPPIELDAVWEDIRER ddPTM_BT-474_Trastuzumab_2h_R1 4 QAAPPIELDAVWEDIRER 18 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;;; 263.52 6.086299999999999e-31 283061000.0 110491.0 162030.0 150124.0 207024.0 160795.0 152517.0 179726.0 143724.0 212501.0 175184.0 False True 109896.12873270421 167423.07060079678 171260.15429879996 233233.21717335115 181271.29014336658 141973.85877640016 171031.96676000656 154449.41469568433 160132.97591751485 164003.60713743189 0.6700836076161018 1.0208499283829742 1.0442462656037024 1.4221224840372333 1.105288434244405 0.8656752205299288 1.0428549087745675 0.941744010339106 0.9763991092179239 1.0 17.323368020634167 -0.24010736887241246 8.596861980609377 1.0 1.017906017445736 0.0 0.1800082442997777 0.0 0.0 0.17749167125777118 0.04183518811683449 0.5752976912275002 0.24010736887241246 0.017906017445735944 QADFEAHNILR ddPTM_BT-474_Trastuzumab_2h_R1 6 QADFEAHNILR 11 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;;;;; 223.31 7.0331e-12 3408990000.0 3712770.0 4451400.0 4288860.0 4232680.0 3838600.0 4000780.0 4356540.0 3685980.0 4737100.0 4268040.0 False True 3692780.8588475278 4599562.158071876 4892694.208560597 4768536.854013544 4327422.956835269 3724215.495423108 4145797.5166010377 3961046.5446271864 3569705.1788879056 3995650.033147116 0.9242002748521402 1.1511423973358088 1.2245051913885805 1.1934320609799938 1.0830335291969593 0.9320674895268001 1.0375777363403522 0.991339709876274 0.8933978574886046 1.0 21.929998796710358 2.919073333456297 4.844698646679969 0.9784849114345499 1.1333868594539542 0.42995963856466735 0.0834683250082835 0.21532565729365002 8.938068381608689 0.02629955544020433 0.028353261517078683 829.9909050611084 -2.919073333456297 0.15490194801940438 QADLYISEGLHPR ddPTM_BT-474_Trastuzumab_2h_R1 7 QADLYISEGLHPR 13 0 P40227;Q92526-3;Q92526 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 ;;;;;; 193.06 2.1854e-06 6180960000.0 5001441.0 5843154.0 5534399.0 5888615.0 5970907.0 5978508.0 6082225.0 5666883.0 6283420.0 6216505.0 False True 4974513.797368331 6037639.848628823 6313594.273341541 6634113.0552266985 6731266.614111499 5565227.813854044 5788004.5403941525 6089774.5853088 4734955.334514336 5819762.3286823 0.8547623625198199 1.0374375288270328 1.084854314793136 1.1399285195085935 1.1566222525852838 0.9562637612237531 0.9945431125027854 1.0463957531900854 0.8135994336363932 1.0 22.47252880592288 1.2654746519902942 24.971967522066414 0.9067996844887163 1.0390293342528925 0.22881904511556095 0.09290939090056075 261.41285777236936 242550.3651470547 0.06261429172683229 0.02285060137209283 18.42784929939927 -1.2654746519902942 0.13222964976417617 QADVFPDRDHFGR ddPTM_BT-474_Trastuzumab_2h_R1 4 QADVFPDRDHFGR 13 1 Q9HCC0-2;Q9HCC0;D6R9R1;D6RDF7;A0A0G2JM88 Q9HCC0-2 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial 0 ;;; 145.29 2.5072e-05 1938420000.0 958430.0 1199470.0 1175780.0 1119990.0 1372540.0 1707300.0 1137130.0 893940.0 1260810.0 1257690.0 False True 953269.9193715841 1239393.6338550732 1341319.603937034 1261780.6191648375 1547324.833318054 1589278.369551906 1082122.6776415543 960650.3421353421 950100.2694884337 1177423.1474374186 0.8096238989749023 1.0526322983818768 1.1391992818013854 1.0716458410988583 1.3141620637284916 1.349793719454949 0.9190601356842022 0.8158921830491715 0.8069318762385999 1.0 20.167201464891033 2.0217785221279643 24.225177981462597 0.857232705904096 1.12740281183214 0.3828783856535315 0.14791230853110932 161.53855609571795 179685.15710285172 0.05844802302790744 0.04316278644061065 105.14255398634725 -2.0217785221279643 0.270170105928044 QAEATRAS(ph)PPRSPAEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QAEATRASPPRSPAEPK 17 2 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 QAEAT(0.004)RAS(0.996)PPRSPAEPK;QAEAT(0.375)RAS(0.624)PPRS(0.001)PAEPK 136.62 5.0615e-06 668090000.0 664780.0 1064280.0 1017670.0 1223920.0 1183700.0 999820.0 1186800.0 893570.0 1114100.0 1117470.0 True False 661200.8983440015 1099703.9164291532 1160949.0902537887 1378868.1465086548 1334437.1786604237 930704.7967231218 1129389.9499837302 960252.7308565198 839544.9831751527 1046152.1078857998 0.6320313206463276 1.0511893138098032 1.1097325919459127 1.3180379183054467 1.2755670696465238 0.8896457692027319 1.0795657165630992 0.9178901649370313 0.8025075673477486 1.0 19.996661200391202 1.6683731928079366 4.175035573665687 0.8887022658256257 1.066180737813162 0.1061734624120978 0.1869028790560614 0.35745266308502477 14.539904419078475 0.10914514549578577 0.051055517981952354 46.59863474153338 -1.6683731928079366 0.1774784719875363 QAEEECAHRGS(ph)PLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEEECAHRGSPLPK 15 1 H7C1J2;F2Z2A4;H7C1M5;Q9H147 H7C1J2;H7C1M5 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 1 QAEEECAHRGS(1)PLPK 176.48 4.824499999999999e-07 758190000.0 437230.0 360620.0 308950.0 323230.0 310480.0 432140.0 428750.0 353290.0 600070.0 454320.0 True False 434876.0022608199 372623.01870060654 352447.4745584601 364150.8848584818 350017.7876408623 402267.1789481401 408009.72451594577 379654.29377026943 452190.78902604256 425324.9086370794 1.0224559940642701 0.8760902809446266 0.8286546764633433 0.856171076425726 0.8229421332563547 0.9457879629885163 0.9592895131004229 0.8926218193682616 1.0631655467229812 1.0 18.698205821558748 1.5159288565988074 1.083457242725369 1.0220654243747511 0.8844321704529662 0.35181420425154486 0.06424018155498716 0.5227688207827031 1.1897215918627757 0.058537164533916226 0.0210870792007564 32.804155099966984 -1.5159288565988074 -0.13763325392178494 QAEEQIEHLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEEQIEHLQR 11 0 H3BP71;O75150-4;O75150;O75150-3 H3BP71 RNF40 E3 ubiquitin-protein ligase BRE1B 0 175.54 9.7111e-06 219130000.0 139230.0 157230.0 161130.0 171210.0 157400.0 166810.0 162500.0 151160.0 181690.0 172990.0 False True 138480.40114990712 162463.30550245807 183815.70343293302 192885.16844544318 177443.957017108 155278.81732850306 154639.2541897168 162440.32677492694 136914.934021267 161949.63009580973 0.8550831580657631 1.003171822043338 1.1350177417767937 1.1910195060731656 1.0956737407311878 0.9588093361907638 0.9548601876906536 1.0030299339296231 0.8454167752051539 1.0 17.305185647358115 2.726596407124486 22.566541224483856 0.9570118483943736 1.0649503828230236 0.2341928880986096 0.09275483592017407 320.89655433767143 605263.1007298476 0.03187790692174976 0.03032315927834292 532.8394938942636 -2.726596407124486 0.10793853442864998 QAEHPKPSACR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEHPKPSACR 11 1 P46527;E7ES52;H7C2T1 P46527 CDKN1B Cyclin-dependent kinase inhibitor 1B 0 86.911 0.0084825 59894000.0 79066.0 82145.0 89785.0 74653.0 69254.0 74209.0 72920.0 73631.0 96496.0 71022.0 False True 78640.31744105837 84879.14666729898 102425.94757478994 84104.06214565544 78073.08639938246 69079.10649919594 69392.5810185486 79125.71911064202 72715.85378015402 66489.31515500658 1.1827512023206157 1.276583259572161 1.5404873299718047 1.2649259802057455 1.1742200414814115 1.0389504890846264 1.0436651491562763 1.1900516485419677 1.0936472064816958 1.0 16.020834897435265 3.19387287745917 2.863740309988148 1.092785202463855 1.3352680888461512 0.5769178474748354 0.09756065371326517 0.19843718902040797 3.324213810078059 0.03050295042559109 0.03938266908933359 1562.6901599219639 -3.19387287745917 0.24248288638229631 QAEILQESR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEILQESR 9 0 E5RJD8;O75347;E5RIW3;O75347-2 E5RJD8 TBCA Tubulin-specific chaperone A 0 140.17 0.0002553 260620000.0 142240.0 164380.0 162230.0 158840.0 143510.0 176740.0 167130.0 135460.0 191170.0 168220.0 False True 141474.19564434953 169851.28893019145 185070.57387156165 178949.12771376807 161785.1478495883 164522.37980120865 159045.28340139927 145568.71305194256 144058.71504675865 157484.05557961224 0.8983398041386526 1.0785300664569644 1.175170230347565 1.1362999705281573 1.0273112871912404 1.0446922972341055 1.0099135611922172 0.9243393721109362 0.9147511125272823 1.0 17.264846245267485 2.1041588312110395 1.7922400417185596 0.9382598067130593 1.0725039524920867 0.3245801575699273 0.07221667196058751 0.3912752911938728 2.411882495371679 0.042768835823315476 0.02362906577512047 127.10388675746121 -2.1041588312110395 0.13424414577902744 QAEMLDDLMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEMLDDLMEK 11 0 F8W1A4;P54819-2;P54819;P54819-6;P54819-3;P54819-5;F8VZG5;A0A5F9ZHP2;F8VY04;A0A5K1VW67;P54819-4 F8W1A4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed 0 107.09 0.0035604 0.0 44779.0 36673.0 44002.0 32201.0 39596.0 55954.0 50955.0 49034.0 65767.0 48941.0 False True 44537.9148394146 37893.63863570336 50197.09912775973 36277.64329835707 44638.31589612081 52086.03168154821 48490.11198299708 52693.16606960685 49559.604082649916 45817.54347950185 0.972071208037163 0.8270552229116443 1.0955868716579542 0.7917849920213902 0.9742625314709722 1.1368141485990142 1.0583306807945934 1.150065282159465 1.081673095477548 1.0 15.483612489764596 2.8884797423504383 4.928954856265268 1.0959412493228649 0.9225596525229831 0.4462919469506542 0.08626132355543259 0.18511115468629533 6.829514104879914 0.024750557662687443 0.026492018683019928 773.5345964416366 -2.8884797423504383 -0.17338159679988174 QAENDSSNDDKTK ddPTM_BT-474_Trastuzumab_2h_R1 2 QAENDSSNDDKTK 13 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ; 103.83 0.0012537000000000002 193480000.0 225310.0 152561.0 136204.0 132001.0 136811.0 147831.0 201483.0 194127.0 314680.0 201814.0 False True 224096.95599429455 157638.90065992792 155380.33929360897 148712.3130656326 154233.06990767206 137611.79092674275 191736.49755019508 208613.7424969322 237131.33049596744 188934.05773834206 1.1861120153606723 0.8343593661564432 0.8224051351757754 0.7871122594084481 0.8163328081444798 0.7283588389199983 1.0148328990834155 1.1041616582746814 1.2551010301402332 1.0 17.52752326351804 1.996739781241001 3.81526503472954 1.1221254368337668 0.8536608256298059 0.44395632762506976 0.12963830732096593 0.1984349077464966 6.258435066043909 0.0581963233602341 0.036192484792046474 99.25211755175151 -1.996739781241001 -0.2684646112039608 QAEREEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QAEREEKR 8 2 P14678-2;P14678;P14678-3 P14678-2 SNRPB Small nuclear ribonucleoprotein-associated proteins B and B 0 ; 113.22 0.0016258 108891000.0 125689.0 105651.0 139953.0 180132.0 161764.0 174246.0 150279.0 135308.0 93379.0 137782.0 False True 125012.30438936058 109167.52966762181 159657.16590671698 202936.69273065007 182363.68654965362 162200.78415096411 143009.43064847047 145405.37004010208 70366.99666449388 128988.63479889519 0.9691730173302937 0.846334483947549 1.2377614985664185 1.5732912674596993 1.4137965475328498 1.2574812068043797 1.1086979164593451 1.1272727265220075 0.5455286566463962 1.0 16.976884429685335 1.3887908036267855 5.471404372174327 0.7754554107348741 1.2047068817971094 0.3700559409378016 0.21957289062319815 0.2303392838437405 10.00895380618843 0.16548627472179545 0.05972123127023987 24.47883830649959 -1.3887908036267855 0.42925147106223527 QAESFEDLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAESFEDLRR 10 1 Q8NI27;A0A0C4DG98 Q8NI27 THOC2 THO complex subunit 2 0 156.01 1.8752e-05 567120000.0 346160.0 422300.0 393180.0 451060.0 403160.0 393620.0 408420.0 388090.0 427190.0 418720.0 False True 344296.3130219918 436356.0002142589 448536.32641817565 508164.14975177567 454500.03628346446 366409.97588181373 388663.1642840872 417051.24648108974 321914.74855272716 391996.93111577193 0.8783137971054873 1.1131617764767296 1.1442342804610004 1.2963472655394208 1.1594479451402464 0.9347266440042579 0.9914954261958235 1.0639145701829953 0.8212175223832383 1.0 18.580482834181918 2.741286325828445 24.897618331951914 0.9767273345209476 1.1293476988934226 0.31864421854556935 0.11251897096673272 299.8828143822226 2739249.1487821457 0.03638493315439014 0.03701859635384172 551.170957916712 -2.741286325828445 0.15262036437247495 QAEVANQETKEDLPAENGETK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEVANQETKEDLPAENGETK 21 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 142.41 1.3379e-07 161040000.0 131610.0 100110.0 107680.0 110330.0 92769.0 140180.0 148380.0 134610.0 203620.0 138670.0 False True 130901.42638324553 103442.10083222698 122840.40802866164 124297.76668761019 104582.58226505786 130489.68654822577 141202.2925333549 144655.28173572986 153440.57936821153 129819.96187864008 1.0083304947017042 0.7968119797241044 0.9462366669272083 0.9574626651316365 0.8055970803844871 1.0051588727950156 1.0876778154145152 1.114276107020878 1.181949040407613 1.0 16.986152712080976 2.418518628338465 3.2854090268093556 1.1062147000666094 0.9020049207235655 0.5986046581758246 0.0741003795809461 0.15109892586045057 3.34356325556552 0.025759449177060162 0.02141756569571917 262.131147301361 -2.418518628338465 -0.20420977934304385 QAEVANQETKEDLPAENGETKTEESPAS(ph)DEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAEVANQETKEDLPAENGETKTEESPASDEAGEK 34 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 QAEVANQETKEDLPAENGET(0.01)KT(0.001)EES(0.003)PAS(0.987)DEAGEK 100.62 3.499e-05 173560000.0 70093.0 46650.0 47823.0 53193.0 46497.0 82534.0 81867.0 70612.0 174740.0 70247.0 True False 69715.6270760644 48202.71704947948 54556.06271503235 59927.228345998825 52418.117340689176 76828.61884413799 77906.78044768945 75881.42600047064 131677.66839603832 65763.7763185176 1.0600916032924654 0.7329675962647947 0.8295761856922226 0.911249804995226 0.7970667178053978 1.1682513253501348 1.1846457853995325 1.1538483683319771 2.002282651140288 1.0 16.005005524061353 2.184044847968289 1.167747073785922 1.4198836262520311 0.8573637677391998 0.4282178808249564 0.25899053131062116 0.443717704138683 1.150951071527495 0.16958479363488524 0.09150508595126712 152.77238124219514 -2.184044847968289 -0.5625198585128314 QAFEELRDDLVELSK ddPTM_BT-474_Trastuzumab_2h_R1 3 QAFEELRDDLVELSK 15 1 Q15397 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 0 ;; 176.33 7.342600000000002e-07 170806000.0 197616.0 204692.0 194580.0 178737.0 180701.0 234728.0 209888.0 211094.0 269354.0 197321.0 False True 196552.05741320152 211505.04948107313 221975.1726803211 201365.08587368275 203712.2012512609 218501.80585027797 199734.91558997708 226846.9061936122 202975.31585868422 184727.80484499247 1.064009056883077 1.1449551390411952 1.2016337923063796 1.090063761882792 1.102769566401758 1.1828311716994944 1.0812390465938644 1.2280062894915167 1.0987805329522726 1.0 17.495041508558465 0.9848618794735386 24.277383461753605 0.9999999929528959 1.1411597583877762 0.3901044948345236 0.051553535755637044 572.2814887498166 917784.3439743335 0.047788791199204185 0.011947197784405844 9.657436905591165 -0.9848618794735386 0.1411597654348803 QAFPNTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 QAFPNTNR 8 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 91.853 0.028365 117264000.0 96619.0 112745.0 99667.0 104484.0 95470.0 116169.0 117889.0 97482.0 122220.0 115857.0 False True 96098.81403938013 116497.6491692084 113699.24727890606 117711.66368701415 107627.53860497652 108138.51046241143 112186.25869028646 104756.60184356598 92100.51866409405 108462.90706983206 0.8860062544470478 1.0740782477294593 1.0482777047982188 1.08527114814678 0.9922981184312375 0.9970091470329874 1.0343283406377555 0.9658288227155867 0.8491430033753073 1.0 16.726842218158378 1.539908174185655 4.4641911771960405 0.9194080345031131 1.0205906267902516 0.25911901240797286 0.0625431012073938 0.19038304093787556 8.357561860344866 0.036003278093982134 0.015432344038371992 34.666354528930476 -1.539908174185655 0.10118259228713844 QAGAPGGSSGSGGS(ph)PELSALR ddPTM_BT-474_Trastuzumab_2h_R1 2 QAGAPGGSSGSGGSPELSALR 21 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 QAGAPGGSSGSGGS(1)PELSALR;QAGAPGGSSGSGGS(1)PELSALR 449.84 3.786299999999997e-198 770050000.0 323920.0 375200.0 352520.0 395100.0 413840.0 401020.0 344640.0 359210.0 458580.0 379350.0 True False 322176.050710895 387688.30518681085 402151.75184123096 445119.6194894839 466540.0709781446 373298.43129953986 327968.44654734805 386016.07423142105 345569.1036571776 355139.55822212494 0.9071815382204969 1.091650581330982 1.1323766742698427 1.2533653578829993 1.313680946481167 1.0511316541821492 0.9234917343176327 1.0869419226736328 0.9730515670716653 1.0 18.43802654240564 2.4906138363803634 24.563772077817944 1.006511220604737 1.1468485293008743 0.28577319038472837 0.10695731962115024 713.2289431076096 1298463.2002127552 0.03761563217259788 0.034034050259699876 309.4666376764384 -2.4906138363803634 0.14033730869613725 QAGEVTFADAHRPK ddPTM_BT-474_Trastuzumab_2h_R1 5 QAGEVTFADAHRPK 14 1 Q13243;Q13243-3 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 ;;;; 195.54 1.5686e-08 7730180000.0 9852780.0 9096470.0 8752330.0 7905870.0 8339900.0 10457430.0 10258600.0 9671180.0 12515350.0 10375700.0 False True 9799733.727226755 9399240.505017769 9984581.987383883 8906752.331392884 9401936.83053989 9734532.47824235 9762352.32634233 10392892.560856977 9431109.689598018 9713513.942916311 1.0088762712255455 0.9676457521196302 1.0279062804728099 0.9169444120567957 0.9679233370943331 1.0021638446652323 1.0050278800970511 1.0699415908530312 0.9709266641322691 1.0 23.21156186609465 2.386455529502336 2.6692788604177293 1.0230991487673353 0.9772245270524081 0.1357018888356457 0.0362527397699631 0.3956087282983661 5.757820361664985 0.014095974249167328 0.011257346477944716 243.47564751727387 -2.386455529502336 -0.04587462171492718 QAGEVTYADAHK ddPTM_BT-474_Trastuzumab_2h_R1 6 QAGEVTYADAHK 12 0 Q08170;A0A0D9SEM4;Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q08170;Q13247 SRSF4;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 0 ;;;;; 203.87 1.2004e-07 13039400000.0 9297370.0 8762840.0 8051440.0 8122030.0 7718700.0 9673400.0 9553400.0 8924630.0 11784000.0 9789900.0 False True 9247313.992954923 9054505.83215136 9185012.767628973 9150278.16522951 8701630.692680765 9004700.626734264 9091265.544467935 9590631.208952878 8879991.097510105 9165100.20044493 1.0089703102761498 0.9879330977430886 1.0021726513347968 0.9983827743405687 0.9494310484743348 0.9824988739672613 0.9919439335782265 1.0464294987726692 0.9688918727892376 1.0 23.127719222909278 1.9731030592282957 24.80701695486777 1.01249614919807 0.9875220223561623 0.06901060995613817 0.023404931298981413 1108.1222930897447 1022018.1561946128 0.009604374739326403 0.006219907205851745 93.99463358509048 -1.9731030592282957 -0.024974126841907696 QAGGHKDPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QAGGHKDPEK 10 1 Q15813-2;Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8Y7E7;A0A2U3TZJ6;A0A2R8Y6Q1 Q15813-2 TBCE Tubulin-specific chaperone E 0 ; 96.229 0.0041353 152371000.0 480530.0 369350.0 331600.0 329820.0 303090.0 331730.0 436100.0 398410.0 596640.0 471940.0 False True 477942.8798719015 381643.5914732102 378286.397681131 371575.17818279343 341686.7149448239 308798.28590842464 415004.1769362188 428141.3772849877 449606.06656639744 441820.38515183766 1.0817583251792464 0.8637980597976553 0.8561995109191888 0.8410095836911112 0.7733611359453197 0.6989226760152814 0.9393051812075102 0.9690394370052686 1.017621824787202 1.0 18.7531004591757 2.013224794508286 24.99125952640226 0.9826283754707266 0.8465726549706494 0.3295636251761994 0.09198046262482812 278.18362118986784 525689.2292482591 0.03600422520658185 0.026577229111867755 103.09195950927035 -2.013224794508286 -0.1360557205000772 QAGIGGEPAAAGAGCS(ph)PRPK ddPTM_BT-474_Trastuzumab_2h_R1 3 QAGIGGEPAAAGAGCSPRPK 20 1 J3QQY0;Q68DK7;J3KSZ8 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK 140.45 1.2255999999999998e-07 1064750000.0 657970.0 689520.0 562510.0 557490.0 578800.0 1616040.0 696530.0 390518.0 810270.0 792460.0 True False 654427.5626273396 712470.2563763589 641706.518575431 628068.1768392619 652506.7491836228 1504326.9585489705 662836.1828970057 419660.43617022387 610589.8155617374 741884.5243408611 0.8821151286432023 0.9603519590995165 0.8649681958867724 0.846584820457441 0.8795260283443068 2.027710390489023 0.8934492648784025 0.56566813621443 0.8230254110021037 1.0 19.500835120682343 2.0035297690080203 24.99988364758028 0.7433686236108665 1.077348259497418 0.11562930994146903 0.3458706855775809 196.78686899206554 1393749.4712093822 0.13556481510009352 0.09964762412555897 100.81607120515328 -2.0035297690080203 0.33397963588655144 QAGPASVPLRTEEEFKK ddPTM_BT-474_Trastuzumab_2h_R1 4 QAGPASVPLRTEEEFKK 17 2 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;; 224.86 1.4517999999999996e-15 3139700000.0 3200120.0 3309180.0 3015750.0 2926450.0 3048570.0 4150560.0 4303470.0 3606240.0 6277920.0 4132330.0 False True 3182890.909486756 3419324.0558584486 3440341.386631097 3296938.2699443195 3436787.319209941 3863641.556567306 4095294.7152481317 3875355.9409156716 4730810.735818107 3868601.1615342945 0.8227498200472069 0.8838657470966427 0.8892985456445066 0.8522300780773037 0.8883798499008114 0.9987179849356657 1.0585983264358867 1.001746052151496 1.2228737309125601 1.0 21.88338056925121 2.5781017709407203 1.4954007757233885 1.072277245434649 0.8615756624484763 0.7228246650044012 0.06002928406045331 0.21298162576469873 0.9632101074059464 0.026507887912987887 0.022094091670654726 378.53127792522673 -2.5781017709407203 -0.2107015829861727 QAGSAAPRPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAGSAAPRPPR 11 1 A0A087WVI0;E9PBL8;Q8WTW3;J3KRP4 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 0 81.625 0.0193 19324000.0 19737.0 22479.0 19118.0 20811.0 21236.0 18161.0 21308.0 20384.0 28810.0 24926.0 False True 19630.73818498684 23227.19992615756 21809.64822336507 23445.670466200085 23940.27872436664 16905.572816395554 20277.250635535303 21905.15758785468 21710.161534221497 23335.201339777763 0.8412500024811783 0.9953717385143748 0.9346243859566707 1.0047340121395916 1.0259298120371239 0.7244665503518881 0.8689554609057604 0.9387173167653199 0.930361012022374 1.0 14.510220294704336 QAHDLS(ph)PAAESSSTFSFSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 QAHDLSPAAESSSTFSFSGR 20 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(0.97)PAAES(0.027)S(0.003)STFSFSGR 327.56 1.2251999999999993e-58 7137100000.0 2286226.0 2570436.0 2302196.0 2521764.0 2492425.0 2822010.0 2525273.0 2329612.0 2571300.0 2674738.0 True False 2273917.2132395892 2655991.408398627 2626325.1857536444 2841019.0638377145 2809820.5499896165 2626931.090996993 2403115.897510329 2503459.476970044 1937637.568654764 2504033.930881588 0.9081015976644605 1.060685071253623 1.0488376987882915 1.13457690361148 1.1221176020567627 1.0490796704468526 0.959697817139511 0.9997705886072632 0.7738064347924334 1.0 21.255822680948913 1.810805042737874 1.6261381934520613 0.9025413067454412 1.0591036703996972 0.3458572466669465 0.08184877844015272 0.3917659068098211 1.9824274883744575 0.058689305936441075 0.024579908859387368 64.68521749441584 -1.810805042737874 0.15656236365425602 QAHELFR ddPTM_BT-474_Trastuzumab_2h_R1 4 QAHELFR 7 0 E7EPM6;P33121-2;P33121;P33121-3;D6RER0;D6RG07 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ;;; 139.88 0.0026622 338300000.0 418924.0 525752.0 518510.0 506318.0 462076.0 539340.0 540880.0 441220.0 589110.0 523327.0 False True 416668.5597308322 543251.3374962043 591511.7010302877 570417.8068860456 520918.63966097374 502056.69526979723 514715.5680377486 474146.076869763 443931.7341695664 489927.82281721354 0.8504692738919758 1.1088395314484623 1.2073445791033874 1.1642894735105949 1.0632558826023697 1.0247564475576003 1.0505946877603298 0.9677876103122673 0.9061166022718253 1.0 18.902209698494058 2.0049942257397166 1.3308206150936652 0.9494450213382849 1.0886537316029108 0.22260010318853007 0.09222879634841082 0.6227216851127738 2.050633622100007 0.06767719581378664 0.03186238082803841 101.15660046664112 -2.0049942257397166 0.1392087102646259 QAHLCVLASNCDEPMYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAHLCVLASNCDEPMYVK 18 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 159.8 1.2605999999999998e-09 0.0 90618.0 83740.0 69393.0 82234.0 78086.0 83955.0 71877.0 76642.0 100490.0 93534.0 False True 90130.12275660629 86527.23527810092 79162.93122523135 92644.8159683581 88029.7892480172 78151.38845881232 68400.03491319553 82361.41522019022 75725.58599701208 87564.58004151373 1.0292988639227898 0.9881533747672745 0.9040519715586003 1.058017019260937 1.005312755526069 0.8925000088136243 0.7811381597532652 0.9405791152215116 0.8647969985251014 1.0 16.418059795813072 2.729344249381304 14.463287861610898 0.8866744805310627 0.9947077148576199 0.38026301983184463 0.06401356209195039 2.3179788861725 3634.982467554003 0.01989067418587525 0.01926062158166683 536.221532332912 -2.729344249381304 0.1080332343265572 QAHLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 QAHLYR 6 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;; 131.65 0.035445 453675000.0 389262.0 395853.0 384556.0 390459.0 317543.0 397826.0 392387.0 306608.0 441517.0 375856.0 False True 387166.25664307363 409028.72780680866 438698.14217932755 439891.069365337 357980.2188251811 370325.22500167275 373405.7417460952 329488.6458838768 332711.0513746917 351868.54829348874 1.1003150424235801 1.162447538407563 1.2467671359288852 1.2501573996844695 1.0173691867640147 1.052453328942573 1.0612080663561967 0.9363969797296426 0.945554960761034 1.0 18.424677039252213 3.1843661915131887 7.443446994129001 1.000284993444543 1.1918108297022862 0.7421497372964279 0.05422476949790213 0.12202882131087184 14.03972023938721 0.017427931768101985 0.020984236554476596 1528.8546254377757 -3.1843661915131887 0.19152583625774322 QAHTMDPQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 QAHTMDPQLR 10 0 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 113.69 0.0011038 1305230000.0 234335.0 296915.0 293048.0 319716.0 271411.0 292587.0 297792.0 240007.0 281498.0 271085.0 False True 233073.36639706607 306797.636286092 334306.61118112167 360192.01281878044 305973.58207096794 272361.1493657141 283386.6632840874 257917.54107085158 212126.5897799472 253784.12321245472 0.9183922281928933 1.2088921576439875 1.3172873344060918 1.4192850532152739 1.2056450899996725 1.0732001116464944 1.1166445705780064 1.016287141236714 0.8358544541510422 1.0 17.953242291137013 1.9798054457823573 1.206881993505626 0.9291726564433751 1.2222648339869548 0.4169303218497331 0.1304129284923392 0.4655280051827791 1.253401550283689 0.10307190938414218 0.047220842728255 95.45648665068116 -1.9798054457823573 0.29309217754357975 QAIEEEGGDPDNIELTVSTDTPNKKPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAIEEEGGDPDNIELTVSTDTPNKKPTK 28 2 Q9NWH9;H7BXE3;H0YL55;H0YKU6;H0YNF3;H0YMR6;H0YLE6;H0YMW8 Q9NWH9 SLTM SAFB-like transcription modulator 0 160.47 5.4887e-12 202160000.0 242600.0 193240.0 179830.0 160980.0 177800.0 269290.0 218300.0 240520.0 339170.0 235890.0 False True 241293.86855539415 199671.8765839531 205148.5008896192 181360.05149434894 200441.77609683515 250674.61614047454 207739.99501301648 258468.82373581282 255586.0981451544 220835.29824441054 1.0926417582407546 0.904166490462794 0.9289660779798441 0.8212457561636175 0.9076527968594732 1.1351202372685874 0.9407010412941288 1.1704144481909373 1.1573607126080145 1.0 17.752611264904615 2.745870672365735 24.83767166843193 1.0859931672815923 0.923244268714193 0.4017423494960263 0.0910370152670211 500.708429952265 1701276.7317144792 0.028072785037786225 0.029239188357463138 557.0198504699473 -2.745870672365735 -0.16274889856739938 QAILGEHPSSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAILGEHPSSFR 12 0 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 82.20200000000001 0.015588 263570000.0 241700.0 197740.0 187260.0 192380.0 184060.0 234780.0 216230.0 212160.0 341860.0 199740.0 False True 240398.71405539475 204321.6563636457 213624.58030690136 216735.2882748343 207498.949990908 218550.21121267267 205770.12882118425 227992.4565266507 257613.1836893079 186992.42219398246 1.2856067172925842 1.0926734568510281 1.142423729263698 1.159059205351098 1.1096650204127119 1.1687650689178877 1.1004196127676347 1.219260405590851 1.3776664351781311 1.0 17.512620280995304 1.620055387331134 7.86486156350224 1.2250946321948692 1.1482175460791693 0.026252258467286516 0.10012941777571259 0.24698765906535897 34.79214185250939 0.047255229490707436 0.023556986211526208 41.692255189853675 -1.620055387331134 -0.07687708611569999 QALDYVELSPLTQAS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QALDYVELSPLTQASPQR 18 0 Q9H2D6-3;Q9H2D6-2;Q9H2D6;Q9H2D6-5;Q9H2D6-7;F6WYE2;F6TR96;H0Y5J9;Q9H2D6-6 Q9H2D6-3 TRIOBP TRIO and F-actin-binding protein 1 QALDYVELS(0.001)PLT(0.074)QAS(0.925)PQR 139.11 2.2618e-06 0.0 42377.0 43669.0 40135.0 44783.0 39555.0 44961.0 42735.0 39322.0 49894.0 45623.0 True False 42148.846940527335 45122.49626653205 45785.65914032624 50452.52320829556 44592.09478914682 41852.95189680969 40667.74478644645 42256.407313070136 37598.292245346966 42711.301080184596 0.9868312571747386 1.056453330274832 1.071979967418224 1.1812452894745091 1.0440350366623412 0.979903464383736 0.9521542017673109 0.9893495689522438 0.8802890873017738 1.0 15.382330225863386 2.7616433143587007 3.4218810643291846 0.9597464870544304 1.0761943170979793 0.5081170517066924 0.053616987057968295 0.2048448914242671 5.0635985809361115 0.01790252306155998 0.01819740633405423 577.621452595452 -2.7616433143587007 0.11644783004354886 QALPCVAESPTVHVEVHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QALPCVAESPTVHVEVHQR 19 0 Q15645;Q15645-2 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog 0 97.618 0.00062894 360250000.0 139320.0 151150.0 146260.0 158410.0 152560.0 185990.0 179480.0 106010.0 170320.0 168550.0 False True 138569.9165999072 156180.93637789562 166852.1366852902 178464.6897578569 171987.61170603568 173132.94907336668 170797.8667198179 113921.00450787252 128346.91817107251 157792.99469708506 0.8781753389364315 0.9897837142752496 1.0574115600353233 1.1310051507701926 1.0899572065046361 1.0972156869557468 1.0824172964566536 0.7219649055179318 0.8133879353608813 1.0 17.267673632005458 1.749603150242507 24.999998790562653 0.8230108317348696 1.0516644111157893 0.4917700892149929 0.09293584789459938 2.173861738590731 4930.6350649099895 0.043346232140548425 0.024037757054115025 56.182770344986636 -1.749603150242507 0.2286535793809198 QALQRYSEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QALQRYSEDR 10 1 B0QY60;Q9UH99-3;Q9UH99;Q9UH99-2 B0QY60 SUN2 SUN domain-containing protein 2 0 60.102 0.091451 189390000.0 201920.0 261640.0 205790.0 228090.0 164670.0 200320.0 220300.0 191440.0 328460.0 200380.0 False True 200832.88515542122 270348.52923528035 234763.44324125416 256966.17061340527 185639.7484244421 186472.34990255805 209643.24737227467 205726.22491262242 247515.43413850685 187591.5768460511 1.0705858361659635 1.4411549483223578 1.2514604716709383 1.3698172110589333 0.989595330161275 0.9940337036325915 1.1175514961650996 1.0966709079984636 1.3194378889497416 1.0 17.517235524490264 3.2423613988940065 24.99955308818996 1.089268461455397 1.2922622081009139 0.36738296254398917 0.12641006371686736 101.92642648429391 670413.3594326141 0.03441260316584666 0.04487990473412009 1747.2755464414452 -3.2423613988940065 0.20299374664551695 QAPAS(ph)PQEAALDLDVVLIPPPEAFR ddPTM_BT-474_Trastuzumab_2h_R1 4 QAPASPQEAALDLDVVLIPPPEAFR 25 0 Q9BW04 Q9BW04 SARG Specifically androgen-regulated gene protein 1 QAPAS(1)PQEAALDLDVVLIPPPEAFR;QAPAS(1)PQEAALDLDVVLIPPPEAFR;QAPAS(1)PQEAALDLDVVLIPPPEAFR;QAPAS(1)PQEAALDLDVVLIPPPEAFR 94.446 0.0068647 78309000.0 77512.0 88717.4 83220.9 87417.2 82184.0 89637.0 78623.8 71364.9 81664.8 80789.0 True False 77094.68400439275 91670.3050281991 94937.67935096988 98484.20855691266 92649.64525726813 83440.60517280152 74820.46642191678 76690.51122161947 61539.604292255906 75632.97685305717 1.0193263205040235 1.2120414777048893 1.2552418706911228 1.3021331786034522 1.2249900653424184 1.1032304775589268 0.9892571935556764 1.013982450679112 0.8136610094273765 1.0 16.20672778289948 2.3217983386147734 1.7847584186951406 0.9462996288517468 1.2119932999442575 0.6530413935691662 0.08553505272768129 0.22394745889054588 1.447694523176429 0.04252332713752073 0.02913462673208436 209.79654828771027 -2.3217983386147734 0.26569367109251074 QAPGLLWDASHQQEQPTSSSHHGGAGAVEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAPGLLWDASHQQEQPTSSSHHGGAGAVEIR 31 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 0 124.5 2.4272e-06 220590000.0 21255.0 35303.0 48265.0 36795.0 44551.0 47288.0 40429.0 24512.0 32915.0 39628.0 False True 21140.565441652507 36478.03901388586 55060.29247309946 41453.24322732366 50224.30577553484 44019.091863978494 38473.29481622192 26341.20990941395 24803.539288403324 37098.90711276229 0.5698433481448838 0.98326451782018 1.484148638280461 1.117371007758432 1.3537947525752672 1.1865333857459002 1.0370465819729453 0.7100265738111834 0.6685787053783784 1.0 15.179089067036452 1.875379765692998 4.069399556345949 0.7682785500828574 1.1359540194835955 0.25870583294508265 0.24161772729792455 0.29144772713690575 7.639505690655259 0.12069217236570948 0.06772564442551464 75.05502357291964 -1.875379765692998 0.36767546940073814 QAPLPS(ph)PESLDLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QAPLPSPESLDLGR 14 0 H3BRS1;Q12968 H3BRS1 NFATC3 Nuclear factor of activated T-cells, cytoplasmic 3 1 QAPLPS(0.992)PES(0.008)LDLGR 104.66 0.0010960000000000002 74440000.0 56333.0 66826.0 61279.0 71328.0 68396.0 67806.0 50653.0 55749.0 64171.0 62646.0 True False 56029.709387184645 69050.2630128299 69906.55055338363 80358.11748657544 77105.82518514688 63118.73081815529 48202.7208767491 59909.273467686 48356.9168973456 58647.878646061065 0.9553578182311243 1.177370172748226 1.1919706589093948 1.3701794394224436 1.3147248794876147 1.0762321208423538 0.8219005015961736 1.0215079360199442 0.8245296848532027 1.0 15.839791304987255 2.4680171828616846 5.889537598854502 0.9275362834822067 1.2086854922591295 0.5641394895990552 0.11779596373944423 0.12122763245546836 15.72945171553148 0.04176044878758854 0.03605530795608595 293.77658823727603 -2.4680171828616846 0.28114920877692273 QAPQTIHLPSGEILDVFDAAER ddPTM_BT-474_Trastuzumab_2h_R1 1 QAPQTIHLPSGEILDVFDAAER 22 0 P21399 P21399 ACO1 Cytoplasmic aconitate hydratase 0 115.66 0.00018869 55753000.0 22999.0 24819.0 21808.0 20465.0 19682.0 24136.0 21357.0 15145.0 27590.0 25056.0 False True 22875.175939429104 25645.085411597676 24878.376841465946 23055.86690167628 22188.386035646254 22467.535130032673 20323.88031833712 16275.196804751718 20790.81418705903 23456.904628479166 0.9752001085282249 1.0932851464323996 1.0605993090520973 0.9829032119474117 0.9459213134501644 0.9578218220128971 0.8664348787802879 0.6938339504945553 0.886340909696021 1.0 14.517725027537564 2.658285543989637 1.2625745391577896 0.822302869297339 1.0360160582855469 0.4071189131170805 0.08205813530866138 0.3456455443504116 1.1277495223013387 0.04037335373696743 0.0351243337628593 455.287308312121 -2.658285543989637 0.2137131889882079 QAQAQES(ph)EEEEESR ddPTM_BT-474_Trastuzumab_2h_R1 8 QAQAQESEEEEESR 14 0 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR 342.28 4.2814999999999995e-69 3046971000.0 1491694.3 1397776.3 1354639.0 1428412.2 1385057.8 1552294.1 1448953.0 1362971.7 1394091.0 1495343.0 True False 1483663.1836316162 1444300.439171883 1545360.396466735 1609249.0380615983 1561436.700949239 1444987.6625742656 1378861.6078520182 1464683.569284055 1050535.952912336 1399908.9295124493 1.05982835908357 1.0317102839503238 1.1039006637417068 1.1495383764871452 1.115384485398665 1.0322011897427614 0.9849652207963547 1.0462706097561396 0.7504316393482892 1.0 20.416901545627038 1.672356003185703 1.4667339940830801 0.8961850123560574 1.083396918641344 0.46549513563552325 0.07640718759815221 0.333498732714491 1.3958169868417096 0.060937333369819074 0.022642135187002 47.02794517051038 -1.672356003185703 0.1872119062852865 QAQEYEALLNIK ddPTM_BT-474_Trastuzumab_2h_R1 4 QAQEYEALLNIK 12 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;; 191.33 1.2804e-05 761750000.0 788290.0 837530.0 769800.0 704590.0 748150.0 840760.0 809990.0 820840.0 1046750.0 879210.0 False True 784045.9342272525 865406.6797524242 878181.1487784525 793791.0217567595 843422.4678675306 782640.2401361562 770807.6892377163 882095.2489410632 788792.4882313901 823098.0650704483 0.9525547045966468 1.0514016694697912 1.066921653744004 0.964394226450793 1.0246925653935814 0.9508468958302929 0.936471268671666 1.0716769803918387 0.9583213977837234 1.0 19.650704800056424 4.7955950193524295 21.64311615311605 1.0048510098453325 0.9525529411076317 0.09083068025835406 0.04721932738415621 31168.923528875275 11825663.999032496 0.011309981547614506 14.02791121841473 62458.998946632084 -4.7955950193524295 -0.05229806873770082 QAQQERDELADEIANSSGK ddPTM_BT-474_Trastuzumab_2h_R1 5 QAQQERDELADEIANSSGK 19 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;; 321.05 5.077699999999998e-62 3635220000.0 2210758.0 2128680.0 2025035.0 2193710.0 2008098.0 2482100.0 2675200.0 2262788.0 3254780.0 2729710.0 False True 2198855.5245663044 2199531.826985768 2310142.326080242 2471433.461073849 2263817.3773706527 2310518.2692349227 2545790.355743575 2431648.7307646433 2452683.0808175444 2555497.5707776933 0.860441250154327 0.8607058962362476 0.9039892475331979 0.9671046019901862 0.8858616823813783 0.9041363590620757 0.9962014383636592 0.9515363108033165 0.9597673301920376 1.0 21.28517278925606 7.9999999999320766 0.16242112721100138 1.0107396525176444 0.38660599233902565 0.6580326636477312 0.029199511238018297 37.99921774605676 0.3966579061717049 0.08497429216422962 5.702818421967551 99999999.98436005 -7.9999999999320766 -0.6241336601786187 QAREQTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 QAREQTGK 8 1 Q9Y5B6-2;Q9Y5B6 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 0 62.2 0.074004 332310000.0 157560.0 456640.0 348890.0 530580.0 397110.0 196330.0 230710.0 127060.0 71816.0 188360.0 False True 156711.71446656174 471838.98635529046 398010.67939375644 597751.3735984069 447679.6046446235 182758.16921110864 219549.67590221282 136541.86239760675 54117.90908509717 176338.70353689068 0.8886972135063763 2.6757539717114915 2.257080671518554 3.3897911326843526 2.538748418046339 1.0364041786939586 1.2450453105224415 0.7743159026290658 0.30689751030054224 1.0 17.427989632433412 2.696392509428695 5.067660641629679 0.867667166422832 2.4227751410505527 0.5831296421152707 0.6238438806953414 0.14453583141359166 9.182390541954689 0.20548051934269923 0.196976738135601 497.04133769344594 -2.696392509428695 1.5551079746277208 QAS(ph)DTGSNDAHNKK ddPTM_BT-474_Trastuzumab_2h_R1 6 QASDTGSNDAHNKK 14 1 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0YA91;E7EQK6;P20810-5;E9PCH5;P20810-2;F8W7E0;E9PSG1;A0A0C4DGB5;H0Y944;E7EN75;D6RGF7;D6RBR1;E7EVY3 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 1 QAS(0.996)DT(0.004)GSNDAHNKK;QAS(0.92)DT(0.08)GSNDAHNKK;QAS(0.888)DT(0.111)GSNDAHNKK;QAS(0.98)DT(0.02)GSNDAHNKK;QAS(0.993)DT(0.007)GSNDAHNKK;QAS(0.994)DT(0.006)GSNDAHNKK 265.42 4.289699999999999e-25 1448355000.0 1702037.0 1134916.0 902740.0 1072343.0 1027550.0 986913.0 1138580.0 1163164.0 2012013.0 1560741.0 True False 1692873.4219060892 1172690.9929887909 1029837.9452432564 1208101.5138501956 1158402.4017339854 918690.0272533118 1083502.535602017 1249965.2041071125 1516179.3557429216 1461133.1731624044 1.158603098608813 0.8025900818134711 0.7048214113257903 0.8268250533491347 0.7928109654965922 0.6287517415438214 0.7415494737258875 0.8554765760343046 1.0376736245481155 1.0 20.47865624610013 1.3483747996591429 3.9003287043195622 1.0192370359889904 0.7974349901947669 0.28198754884409627 0.13143328408570065 0.2762076299833037 6.659084011784344 0.10225880174612517 0.03373360637325464 22.303591369613557 -1.3483747996591429 -0.22180204579422347 QAS(ph)ESSSRPH ddPTM_BT-474_Trastuzumab_2h_R1 5 QASESSSRPH 10 1 A0A2R8Y653;Q9BZX2;Q9BZX2-2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 QAS(0.672)ES(0.239)S(0.088)SRPH;QAS(0.688)ES(0.3)S(0.006)S(0.006)RPH;QAS(0.981)ES(0.018)SSRPH;QAS(0.905)ES(0.073)S(0.021)S(0.002)RPH;QAS(0.999)ES(0.001)SSRPH 146.08 7.7085e-05 455631000.0 461325.0 441275.0 439877.0 468764.0 495753.0 431790.0 480063.0 447409.0 550862.0 527994.0 True False 458841.27745802543 455962.5716186291 501807.85812057497 528109.4743365449 558884.2059917562 401941.3736243294 456840.51867124974 480796.9314768685 415109.44127262477 494296.9708815947 0.9282704618635779 0.9224466231411556 1.0151950905658684 1.0684052410732854 1.130664841006345 0.8131576709997917 0.9242227761510653 0.9726884035306783 0.839797663603448 1.0 18.915018539912086 2.7320674898573887 24.994310479313256 0.9148697137383995 1.0111663180755919 0.309209230794092 0.07679462294789048 753.5832005473998 2900798.011075221 0.025918773131803498 0.024974030916171088 539.5944695954638 -2.7320674898573887 0.09629660433719234 QAS(ph)LDGLQQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 QASLDGLQQLR 11 0 Q3MII6 Q3MII6 TBC1D25 TBC1 domain family member 25 1 QAS(1)LDGLQQLR;QAS(1)LDGLQQLR;QAS(1)LDGLQQLR;QAS(1)LDGLQQLR 147.56 3.6968e-05 1017500000.0 559764.0 613709.0 583829.0 625480.0 535372.0 643430.0 631620.0 540485.0 658304.0 662000.0 True False 556750.2928196267 634135.9330700758 666027.048467361 704665.7038680905 603548.4508015445 598951.1985713011 601066.1275772867 580818.7352272194 496073.8000216642 619750.5932332862 0.898345719872599 1.0232114982927893 1.0746694811418365 1.137014972735719 0.9738569956872266 0.9664390887413709 0.9698516373199076 0.9371814106656094 0.8004410248864939 1.0 19.24132822171583 2.28494904759397 1.268361164219822 0.9087945592812908 1.03063747865638 0.278358404626201 0.07450128128487751 0.5750193014833529 1.8113392832885296 0.04671216551298039 0.028010166000266023 192.7298784895278 -2.28494904759397 0.12184291937508906 QAS(ph)LPVSGSVAGDFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 QASLPVSGSVAGDFVK 16 0 Q9Y3S1;Q9Y3S1-4;Q9Y3S1-2;H0Y7T5;F8W9F9;H0Y7R3;H0Y493;H0Y7J9;E9PCD1 Q9Y3S1 WNK2 Serine/threonine-protein kinase WNK2 1 QAS(0.969)LPVS(0.027)GS(0.004)VAGDFVK;QAS(0.999)LPVS(0.001)GSVAGDFVK 188.1 1.2933e-09 170344000.0 320370.0 186415.0 157767.0 245270.0 196414.0 220965.0 168504.0 177170.0 297260.0 225971.0 True False 318645.16351645335 192619.71058475302 179979.2222646532 276321.1568519007 221426.15866301316 205690.209645661 160352.8177722096 190391.32505103084 224004.25607992633 211549.33731649374 1.5062451509348678 0.9105190922748173 0.8507671285936987 1.3061783145106403 1.0466880278227626 0.9723037294980176 0.7579925317010552 0.8999854476792385 1.0588747708757844 1.0 17.690634640860427 2.7385787348447055 3.3213310078845186 0.9102248800230782 1.110934554842283 0.19399331014482002 0.18953719872349567 0.4182194313242373 9.719820549009384 0.06267030938054752 0.06263316849764644 547.7453947391159 -2.7385787348447055 0.20070967481920488 QAS(ph)PAWK ddPTM_BT-474_Trastuzumab_2h_R1 3 QASPAWK 7 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 QAS(1)PAWK;QAS(1)PAWK;QAS(1)PAWK 83.045 0.023962 353000000.0 1126100.0 1087140.0 1025930.0 1021380.0 1023460.0 1135910.0 1097460.0 1055260.0 1424390.0 1135000.0 True False 1120037.2027214724 1123324.7977099924 1170372.026456581 1150686.6032755491 1153791.5644773154 1057387.2153445228 1044371.6670956723 1134008.8597017035 1073368.1703481337 1062563.328277612 1.0540898343791179 1.0571838570138432 1.1014609626644314 1.0829346097806543 1.0858567520371534 0.9951286546454793 0.9828794569718231 1.0672388454624184 1.0101686570418686 1.0 20.019117397086887 2.74635174837901 24.93788617592198 1.017147951980855 1.0770087508970727 0.6298371519645742 0.024780349835854608 451.1656191757388 1444092.531094743 0.008262759242964317 0.008611369250326784 557.6372135081854 -2.74635174837901 0.05986079891621765 QAS(ph)PTEVVER ddPTM_BT-474_Trastuzumab_2h_R1 5 QASPTEVVER 10 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01;A0A0C4DG68 Q8TB72-3 PUM2 Pumilio homolog 2 1 QAS(0.995)PT(0.005)EVVER;QAS(0.887)PT(0.113)EVVER;QAS(0.952)PT(0.048)EVVER;QAS(0.983)PT(0.017)EVVER;QAS(0.946)PT(0.054)EVVER 211.05 6.914e-08 6189800000.0 1826050.0 2018450.0 2061610.0 2111330.0 2101240.0 2257560.0 2100780.0 1984590.0 2214460.0 2100720.0 True False 1816218.7496932265 2085632.8880712085 2351866.7681646426 2378624.161520459 2368820.458974767 2101500.190924618 1999157.245641066 2132690.183343827 1668736.0052437386 1966650.2510831212 0.9235087676077405 1.0605001509152725 1.1958744402414032 1.2094800080545312 1.2044950329475985 1.0685683383546358 1.0165291182507117 1.0844277889112515 0.8485169156664699 1.0 20.907308980986066 1.6389193550749614 1.3757090010405344 0.9414958256856892 1.1178359752351728 0.3089190520148627 0.09521556350677568 0.5043066460165795 1.839160006054501 0.08413670391973346 0.030607848321217736 43.54310102089307 -1.6389193550749614 0.17634014954948352 QAS(ph)TDAGTAGALTPQHVR ddPTM_BT-474_Trastuzumab_2h_R1 8 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 QAS(0.946)T(0.054)DAGTAGALTPQHVR;QAS(0.5)T(0.5)DAGTAGALTPQHVR;QAS(0.93)T(0.07)DAGTAGALTPQHVR;QAS(0.933)T(0.067)DAGTAGALTPQHVR;QAS(0.475)T(0.475)DAGT(0.05)AGALTPQHVR;QAS(0.904)T(0.096)DAGTAGALTPQHVR;QAS(0.929)T(0.071)DAGTAGALTPQHVR;QAS(0.944)T(0.056)DAGTAGALTPQHVR 329.19 7.925299999999997e-75 54370803600.0 1972874.7 2012862.1 1931044.7 2002320.0 1925991.0 2172165.4 1993474.3 1870970.0 2256226.0 2040593.9 True False 1962252.9618221868 2079858.9981976643 2202919.008818579 2255813.5066975034 2171254.5376069723 2022008.718625352 1897042.3322976483 2010591.2819931528 1700209.3341794678 1910361.450261669 1.0271631902713543 1.0887253812166167 1.1531425157876993 1.1808307304298444 1.1365673953008044 1.0584430073944333 0.9930279592052089 1.0524664228948688 0.8899935318243487 1.0 20.86541419877118 2.445153015217541 2.654357514247761 0.993872136176319 1.1209952935208423 0.5708362600544323 0.054041123965437025 0.225639608570875 3.2454607136559774 0.021616768391443053 0.01795931549979571 278.71029772087337 -2.445153015217541 0.12712315734452329 QAS(ph)VAAENSVICSFLHYMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QASVAAENSVICSFLHYMEK 20 0 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 1 QAS(1)VAAENSVICSFLHYMEK 132.53 7.975599999999999e-06 33317000.0 39050.0 28308.0 31658.0 36006.0 32477.0 41642.0 35536.0 36222.0 44215.0 33088.0 True False 38839.759138862886 29250.214667452634 36115.171223731115 40564.355908221645 36612.75344373965 38763.38655472407 33816.98791929711 38925.06957158909 33318.80570064571 30976.295511937984 1.253854229402428 0.9442773638371272 1.1658970392315846 1.3095289555391965 1.1819603615813075 1.2513887123715297 1.0917053624525357 1.2566082847636741 1.0756226704967011 1.0 14.918877000561457 1.0223603525459655 6.334748693270242 1.0001473205463303 1.17909576664794 0.27090529306349576 0.09840325726552471 0.18017616597497907 25.03594745226072 0.09285735641265772 0.023328544367206248 10.528350934172714 -1.0223603525459655 0.17894844610160976 QAS(ph)VHDS(ph)GEEGEA ddPTM_BT-474_Trastuzumab_2h_R1 2 QASVHDSGEEGEA 13 0 Q8TE77;Q8TE77-3;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 2 QAS(1)VHDS(1)GEEGEA;QAS(1)VHDS(1)GEEGEA 166.62 4.8696e-05 3522500000.0 1649630.0 1727060.0 1685690.0 1820240.0 1883410.0 2058280.0 1898310.0 1677020.0 1975470.0 1854340.0 True False 1640748.5753711213 1784544.1480701845 1923020.4997198577 2050682.1973665894 2123251.0996543285 1915995.948269957 1806481.4930515776 1802167.7481350088 1488641.8884418076 1735994.433619652 0.9451346983584865 1.0279665150476915 1.1077342544873519 1.1812723345493654 1.2230748316555504 1.1036878409079867 1.0406032750260357 1.038118390954389 0.8575153581212241 1.0 20.72733089118364 1.55903418888476 2.2441218547404835 0.9322706393638791 1.0999816739172266 0.3681928621495326 0.08129467649596113 0.3027170584143335 3.2445124749519176 0.06737657271678041 0.023941959502431137 36.227151632824366 -1.55903418888476 0.16771103455334746 QAS(ph)VHDSGEEGEA ddPTM_BT-474_Trastuzumab_2h_R1 7 QASVHDSGEEGEA 13 0 Q8TE77;Q8TE77-3;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 QAS(1)VHDSGEEGEA;QAS(1)VHDSGEEGEA;QAS(0.999)VHDS(0.001)GEEGEA;QAS(1)VHDSGEEGEA;QAS(1)VHDSGEEGEA;QAS(1)VHDSGEEGEA;QAS(1)VHDSGEEGEA 241.41 7.2442e-17 11915916000.0 4842396.0 5544702.0 5405183.0 6110485.0 5855815.0 6318054.0 6208153.0 5655305.0 5636012.0 5908631.0 True False 4816325.077976769 5729254.054226859 6166185.783707136 6884071.774477863 6601518.330115226 5881301.798079363 5907840.9219424855 6077332.576156911 4247092.36129159 5531537.110946498 0.8707028410684657 1.0357435807289612 1.1147327876558428 1.2445133488944329 1.1934328917456443 1.0632310115827854 1.0680287962366393 1.0986697647079553 0.7677960530874705 1.0 22.399249003527174 1.259066801802867 24.85692700788019 0.8838980672905374 1.0927771260863628 0.36203986891371764 0.10709195500856653 201.31219624175768 244025.38943524036 0.07321357032953701 0.026667684061399438 18.15794941125429 -1.259066801802867 0.20887905879582536 QASCSGDEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QASCSGDEYR 10 0 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A087WT27;A0A494C1E2;A0A494C1Q4;J3KN95;A0A494C099;A0A494C163;D6RIS6 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ; 212.63 8.5965e-08 137510000.0 200254.0 212075.0 190270.0 208123.0 195340.0 213326.0 199867.0 186918.0 224090.0 207989.0 False True 199175.8547143109 219133.78817295554 217058.3621435127 234471.350460668 220215.39112910975 198579.27573538886 190198.6696439145 200866.77031037182 168866.0221521585 194714.9639516584 1.022909850748605 1.125408051470351 1.1147492608601024 1.2041773559780433 1.1309628528795677 1.0198459928569734 0.9768056125934669 1.0315939064664836 0.8672472763525386 1.0 17.571004234659824 2.6085060818375396 3.3378408482256625 0.9793642545001304 1.1244802404303695 0.6079782022466159 0.05719237442546259 0.1810348719070482 3.7613436310707913 0.019878102010952824 0.018467798421095506 405.98134855363946 -2.6085060818375396 0.1451159859302391 QASDTGSNDAHNKK ddPTM_BT-474_Trastuzumab_2h_R1 6 QASDTGSNDAHNKK 14 1 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0YA91;E7EQK6;P20810-5;E9PCH5;P20810-2;F8W7E0;E9PSG1;A0A0C4DGB5;H0Y944;E7EN75;D6RGF7;D6RBR1;E7EVY3 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 0 ;;;;; 272.77 3.532099999999999e-33 620251000.0 692582.0 549245.0 558159.0 500965.0 517777.0 515973.0 674805.0 653655.0 900340.0 713985.0 False True 688853.2154650937 567526.2877993861 636742.9355950014 564387.1176349017 583712.8318452802 480305.0009797957 642162.1041445661 702434.0552928344 678463.2709379029 668417.8660266872 1.0305727157771551 0.8490591240072076 0.9526120828876511 0.84436270530861 0.8732753289720939 0.7185699625817887 0.9607195390539235 1.0508906045081523 1.0150286301755054 1.0 19.350390769899988 2.005750829867616 24.987974570865347 1.02217198047172 0.8751647650503683 0.423947442396849 0.07594265944445507 133.5193783628419 580153.2097506302 0.028201567214220978 0.020767678734599407 101.33298356932062 -2.005750829867616 -0.14700721542135164 QASLADCLNHAVGFASR ddPTM_BT-474_Trastuzumab_2h_R1 2 QASLADCLNHAVGFASR 17 0 O43592 O43592 XPOT Exportin-T 0 ; 172.66 1.5739e-09 1026650000.0 374820.0 362770.0 393530.0 506740.0 423810.0 405030.0 344920.0 360040.0 456380.0 447370.0 False True 372802.0107664173 374844.58015090396 448935.6033759213 570893.2320427769 477779.69138132496 377031.2294380644 328234.9018776439 386908.0130460758 343911.26417868835 418818.46358727344 0.8901279269621617 0.8950049072342147 1.0719097709558645 1.3631042603827663 1.1407799152144236 0.9002259026708325 0.7837164079783848 0.9238083959625908 0.8211463774376415 1.0 18.675965519233316 2.6622103783998092 6.2238137713445285 0.8744639785416616 1.0781467500057498 0.31978483053976736 0.13553064858819416 0.3006351094447935 19.76617057630298 0.04856623148187896 0.0458004219064335 459.4205087456119 -2.6622103783998092 0.2036827714640882 QASPT(ph)EVVER ddPTM_BT-474_Trastuzumab_2h_R1 1 QASPTEVVER 10 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01;A0A0C4DG68 Q8TB72-3 PUM2 Pumilio homolog 2 1 QAS(0.367)PT(0.633)EVVER 133.15 0.010773 0.0 172380.0 206640.0 170040.0 188810.0 198240.0 203760.0 178970.0 188640.0 193740.0 203760.0 True False 171451.92523321867 213517.88748348202 193980.15398582458 212713.32664087453 223484.68893946323 189674.5507994473 170312.53736820715 202717.27469451062 145995.37298299433 190755.86235228754 0.8988029155118787 1.1193254291139825 1.0169027132051252 1.1151076775194253 1.1715744207469345 0.994331437369703 0.8928298992650318 1.0627053459575087 0.7653519592146026 1.0 17.54136786940808 2.485386939382999 24.09985567259906 0.9470625617342412 1.0691190633369947 0.2816828497111217 0.09949995988140184 336.83051867308933 982086.6348931859 0.032400132840123864 0.02835548282801505 305.76441412186176 -2.485386939382999 0.1220565016027535 QATENAKEEVRR ddPTM_BT-474_Trastuzumab_2h_R1 3 QATENAKEEVRR 12 2 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ;; 225.13 1.0363e-11 304797000.0 167001.0 256246.0 252709.0 314260.0 276731.0 263320.0 317401.0 250840.0 437220.0 329862.0 False True 166101.88517155542 264774.99320602225 288288.2306139952 354045.28377819626 311971.05253685743 245117.30818860617 302047.1010404324 269558.9545397112 329472.9894478413 308809.9247509333 0.5378774186274058 0.8574044160645845 0.9335458724213945 1.1464828536963212 1.0102364837803504 0.7937481555565365 0.9781003679983558 0.8728960209330076 1.0669119190828258 1.0 18.23635959413757 4.7378078619611195 2.167763600490699 0.9666634814389207 0.42380842620181414 0.6718059296802126 0.09220962301611835 0.40541139538320825 2.1555198986690294 0.024177994148818233 0.426456374096618 54677.400879895366 -4.7378078619611195 -0.5428550552371065 QATMLGSHDELR ddPTM_BT-474_Trastuzumab_2h_R1 1 QATMLGSHDELR 12 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 0 89.507 0.005998600000000001 0.0 68093.0 94590.0 102940.0 105650.0 110420.0 102250.0 85207.0 82811.0 80922.0 114090.0 False True 67726.39485384357 97738.37096913741 117433.05722948002 119025.27916746151 124481.33248938409 95181.6981706098 81085.21188765045 88990.77732573758 60979.85739924575 106808.67852263691 0.6340907479675418 0.9150789273029237 1.099471118394105 1.114378352150808 1.1654608428003503 0.8911419885270568 0.7591631411343166 0.83317927491142 0.570926054349804 1.0 16.704669349485634 2.4675201131412785 5.993538181596942 0.7860241199159843 0.9986458847675469 0.22550622618481553 0.1692336393575654 0.22648343765862608 31.329339666340594 0.05973849948751007 0.05153018207027939 293.4405399635457 -2.4675201131412785 0.2126217648515626 QATVGDINTERPGMLDFTGK ddPTM_BT-474_Trastuzumab_2h_R1 4 QATVGDINTERPGMLDFTGK 20 1 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 ;;; 252.55 4.0374e-36 3092190000.0 3249090.0 2631400.0 2394000.0 2221490.0 2063980.0 2822010.0 2447020.0 2434670.0 3043950.0 2747790.0 False True 3231597.260447839 2718984.5582851125 2731054.390978971 2502730.406225496 2326815.6188320867 2626931.090996993 2328648.2940758187 2616357.4384037545 2293809.3093402786 2572423.6896986263 1.2562461127180953 1.0569738450059354 1.0616658530690677 0.97290754094972 0.9045226990211267 1.0211891227392453 0.9052351303562411 1.0170787374105839 0.8916918774018175 1.0 21.294696849892873 6.037856857138538 0.750892362450876 0.9584406372160506 3.0263553026551855 0.7746711074825068 0.048233217542047124 6.809020511125085 0.6397190865468454 0.01576357419275975 18.43703573464034 1091080.6584991068 -6.037856857138538 2.067914665439135 QATVSWDSGGSDEAPPKPS(ph)RPGYPSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 E7ESA6;Q05397;Q05397-7;H0YBP1;Q05397-5;E9PEI4;H0YB16;H0YBZ1;Q05397-2;Q05397-6;B4DWJ1;E5RJQ2;E5RG80;E5RHK7 E7ESA6 PTK2 Focal adhesion kinase 1 1 QATVSWDS(0.001)GGSDEAPPKPS(0.686)RPGYPS(0.312)PR 137.36 8.417699999999999e-06 559720000.0 194630.0 160920.0 157680.0 169980.0 173550.0 207190.0 196320.0 206810.0 200530.0 220120.0 True False 193582.1337054261 166276.12492180595 179879.97342087064 191499.45057155777 195650.56378855873 192867.44297279874 186823.25158477074 222243.21235990126 151112.06846433284 206071.75314578693 0.9393918902047436 0.8068846039475033 0.8728997093241269 0.9292852981945571 0.9494293167397103 0.9359237257342752 0.9065932071369398 1.078474895114197 0.7332983106977672 1.0 17.652787238463247 3.691533931231564 3.59311361267165 0.9450585471881884 0.8654210810330888 0.08128813308604532 0.08728004062847403 0.4626589527347666 12.33156589788017 0.022853567558911523 0.03877743136053423 4915.117802923814 -3.691533931231564 -0.07963746615509959 QATVSWDSGGSDEAPPKPSRPGYPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 E7ESA6;Q05397;Q05397-7;H0YBP1;Q05397-5;E9PEI4;H0YB16;H0YBZ1;Q05397-2;Q05397-6;B4DWJ1;E5RJQ2;E5RG80;E5RHK7 E7ESA6 PTK2 Focal adhesion kinase 1 1 QATVSWDSGGSDEAPPKPSRPGYPS(1)PR;QATVSWDSGGSDEAPPKPSRPGYPS(1)PR;QATVSWDSGGSDEAPPKPSRPGYPS(1)PR 316.13 1.8221999999999992e-82 2426590000.0 1450570.0 1214490.0 1128060.0 1182780.0 1140800.0 1544830.0 1517830.0 1508110.0 1713070.0 1597980.0 True False 1442760.292293478 1254913.5654752904 1286881.0427267088 1332519.826726836 1286074.1179486457 1438039.5382386625 1444406.7642263258 1620652.8262274084 1290906.8524619495 1495995.5483004919 0.9644148299321538 0.8388484624174987 0.8602171605314299 0.890724459869302 0.8596777707057184 0.9612592362807031 0.965515416050019 1.0833273053977546 0.8629082178275658 1.0 20.51267445146526 2.552648184419999 2.8419778746628155 0.9940218474445449 0.8794523567234621 0.35699880949947715 0.059997230748333304 0.2517797885478731 3.9997771417429293 0.021086621945986542 0.01889901425289635 356.9835338704776 -2.552648184419999 -0.1145694907210828 QAVDFLSNEGHIYSTVDDDHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 QAVDFLSNEGHIYSTVDDDHFK 22 0 Q5TEJ0;P15927;P15927-2;P15927-3 Q5TEJ0 RPA2 Replication protein A 32 kDa subunit 0 ; 194.75 1.4485e-18 1001830000.0 232360.0 439670.0 428470.0 477130.0 494800.0 367630.0 376860.0 295288.0 269520.0 400240.0 False True 231108.9995776229 454304.15016387217 488794.8516719974 537534.6090787592 557809.8470906293 342216.6034079344 358629.8420549949 317323.89000208164 203100.40738297024 374696.34053729643 0.616790116621432 1.2124595332647818 1.304509275353715 1.434587293561396 1.4886984118680127 0.913317175495262 0.9571212826384614 0.8468828106168705 0.5420400078947504 1.0 18.515362362126588 2.568679723929333 6.7695303223073235 0.8432321236185348 1.2287806348726642 0.3449465688694734 0.24879176015966387 0.2908279129100899 18.3108003719218 0.0836950452751005 0.07858484038886412 370.40745927317323 -2.568679723929333 0.38554851125412937 QAVEQQIQSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 QAVEQQIQSHR 11 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;;; 234.63 1.6747e-15 4353600000.0 3080070.0 3246910.0 3197130.0 3372160.0 3171500.0 3365260.0 3205930.0 2965320.0 3188070.0 3300410.0 False True 3063487.2453479473 3354981.4365514596 3647258.1140478738 3799075.110244641 3575371.726046752 3132627.497169944 3050846.9180580843 3186607.2359898603 2402412.866449338 3089775.008176839 0.9914920138976712 1.085833572888891 1.1804283821299937 1.2295636737920066 1.1571624848362165 1.013869129266597 0.987400995213006 1.031339572479149 0.7775365067331916 1.0 21.559070356837182 2.5478620789807698 2.8319682044256598 0.9615623091945742 1.134732151417961 0.48569630349997717 0.0871118376657316 0.25892398466821165 4.095554392257083 0.0328142624537694 0.02932070920232212 353.0710254962199 -2.5478620789807698 0.17316984222338672 QAWRKGPDGPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 QAWRKGPDGPQK 12 2 Q9BYZ6-2;E5RI44 Q9BYZ6-2 RHOBTB2 Rho-related BTB domain-containing protein 2 0 ; 68.069 0.030182 6574700000.0 14687200.0 11294800.0 9382200.0 7423100.0 7594100.0 13352300.0 11736600.0 7116900.0 18018600.0 12053200.0 False True 14608125.74710132 11670740.59014921 10703132.208455693 8362863.698892412 8561163.621242825 12429286.928933337 11168855.819834042 7647999.216885949 13578157.466869965 11283954.456736319 1.2945927602871996 1.0342775340768933 0.9485267110473061 0.7411288064797117 0.7587024260038522 1.1015009832402571 0.9897997960428169 0.677776505232191 1.2033155148693504 1.0 23.427769412385796 4.671103779978376 1.987696872680182 0.9008804458156723 1.3758857757039347 0.3251673849623983 0.15697634054491316 0.6897551310297049 3.283152853772625 0.04019490258846631 0.5676140406233893 46892.54242234392 -4.671103779978376 0.4750053298882624 QAYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 QAYSPR 6 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 QAYS(1)PR;QAY(0.001)S(0.999)PR;QAYS(1)PR;QAYS(1)PR 85.86200000000002 0.056887 10563500000.0 9221980.0 10315610.0 9350440.0 10185020.0 9119640.0 8245320.0 9875020.0 9192760.0 11031050.0 10112110.0 True False 9172329.884338303 10658958.842932068 10666900.676518548 11474442.487706363 10280972.097658832 7675340.435795524 9397327.556360235 9878770.431089424 8312595.535997013 9466746.482387064 0.968899917347895 1.1259368636060045 1.1267757826159577 1.2120787758555307 1.0860090229295396 0.8107685623646455 0.9926670766819432 1.04352328959785 0.8780836744136589 1.0 23.174437256874413 2.974515948899155 24.813332061268614 0.9584856927974499 1.1157421597588766 0.4732778307997608 0.08335292036699471 626.2751222798314 609792.4041996188 0.025832185188897565 0.027501346934649222 943.0092416100979 -2.974515948899155 0.1572564669614267 QAYVDKLEELMK ddPTM_BT-474_Trastuzumab_2h_R1 2 QAYVDKLEELMK 12 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ; 155.98 5.737e-05 390410000.0 790650.0 611100.0 547490.0 536270.0 475720.0 677210.0 633870.0 578900.0 1073950.0 702160.0 False True 786393.2282494741 631440.0940822487 624571.8331316112 604161.7270149984 536300.1221866498 630396.0666808675 603207.286481451 622100.4575946372 809289.4126927173 657347.5476505801 1.1963127132064537 0.9605878904379778 0.9501394435316414 0.9190902577705317 0.8158547546171507 0.9589996478026888 0.9176383005266677 0.9463798257376647 1.2311438836049382 1.0 19.32629681712911 -0.4012287764365112 8.432643845799578 0.999999985932028 0.9732088660406973 0.0 0.12194105722320558 0.0 0.0 0.1147585283726923 0.02704884453710652 0.3969823731117526 0.4012287764365112 -0.02679111989133065 QCSDLLSQAQYHVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QCSDLLSQAQYHVAR 15 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 0 166.35 1.3725e-06 254190000.0 82081.0 106500.0 105510.0 117130.0 107930.0 109090.0 100200.0 95529.0 107490.0 114610.0 False True 81639.08501605647 110044.78811939042 120364.89089063973 131958.64599039045 121674.24574877044 101548.86507023805 95352.94319882839 102657.85906643287 81000.52979220638 107295.4916774423 0.7608808510005662 1.0256235970306489 1.121807533651902 1.2298619814063754 1.13401079436361 0.9464411177267347 0.8886947783927747 0.9567770039681505 0.7549294805015172 1.0 16.71122993290553 2.5655920495350526 5.188690207423413 0.9041051587663687 1.065701728321583 0.24612143029319344 0.1280140402546607 0.3252838384878223 14.351680602390026 0.04413072377529325 0.04112850766517623 367.7833374901947 -2.5655920495350526 0.1615965695552144 QCVENADLPEGEKKPIDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 QCVENADLPEGEKKPIDQR 19 2 A0A087WW66;Q99460-2;Q99460;C9J9M4;H7BZR6 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ; 148.38 5.4029e-08 1101260000.0 927140.0 713660.0 715990.0 711760.0 711660.0 1008090.0 946350.0 875710.0 1451540.0 1054020.0 False True 922148.3812549377 737413.7416834194 816795.168503356 801868.7430216034 802285.6826607053 938403.1110886085 900571.4350919288 941059.926965278 1093827.4166394945 986751.5412080771 0.9345294562458489 0.7473145071358145 0.8277617357489566 0.8126349030475066 0.8130574406587389 0.9510024275611714 0.9126628107308166 0.9536949147433214 1.1085135122265173 1.0 19.91232734190357 2.053774782120662 0.9227484160271374 1.0396778214993572 0.8207934654165069 0.6534813710937872 0.05993443904985139 0.33719726681201406 0.5314218359510969 0.046732785738280894 0.023369001471555136 113.18132715235852 -2.053774782120662 -0.21888435608285028 QDAAGKDS(ph)PNR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDAAGKDSPNR 11 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 QDAAGKDS(1)PNR 88.76799999999999 0.0077108 138050000.0 46316.0 37520.0 33049.0 39077.0 35452.0 40905.0 46751.0 45149.0 58765.0 43606.0 True False 46066.63980219138 38768.830518681054 37702.0119329424 44024.14419334494 39966.60205953314 38077.33363001268 44489.47552383664 48518.24764197658 44283.15316065692 40823.027747025175 1.1284474068817276 0.9496804293627189 0.9235476644842883 1.0784144788612118 0.9790210149820541 0.9327415366144033 1.0898132250143706 1.1885019392152305 1.0847591568923716 1.0 15.317095567153494 2.081593251833868 6.862808950800155 1.1186372734305297 0.9961654887030129 0.242940634740328 0.0749363609723782 0.22553984898094154 15.653036414706746 0.02755072006777578 0.0202563931859036 120.66831597310653 -2.081593251833868 -0.12247178472751674 QDAKDPTSLLGVLQAEADST(ph)SEGLEDAVHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 QDAKDPTSLLGVLQAEADS(0.415)T(0.508)S(0.077)EGLEDAVHSR 113.23 0.0001138 21234000.0 19811.0 21442.0 17980.0 19614.0 22967.0 24224.0 19798.0 17216.0 35213.0 27490.0 True False 19704.33977720902 22155.684008037297 20511.427715038397 22097.130388931284 25891.71131392581 22549.4518971624 18840.295104295485 18500.74534107663 26535.22798002572 25735.564664626923 0.7656462966321577 0.8608975282555152 0.7970070982445157 0.8586223258315913 1.006067348874358 0.8761980625261439 0.7320723422941302 0.7188785473398054 1.0310723050307857 1.0 14.651475816646839 1.2203577670024732 24.99360349198519 1.0155363976181402 0.8256683538641957 0.47659813829256636 0.07905395426931906 266.7004606245295 366185.9992388913 0.08449423138550724 0.021290550235324255 16.60954620097073 -1.2203577670024732 -0.1898680437539445 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR ddPTM_BT-474_Trastuzumab_2h_R1 3 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 ;; 176.25 3.7407e-14 182960000.0 178403.0 199804.0 187541.0 195866.0 189329.0 225534.0 210822.0 199257.0 290708.0 233916.0 False True 177442.4980704368 206454.35535593168 213945.1426644058 220662.61551740643 213438.92590909803 209943.3654299299 200623.7344417505 214126.56914654456 219066.90868762464 218987.2806144372 0.8102867781752733 0.9427687068247047 0.9769752017748059 1.007650375392893 0.974663575483601 0.958701185022565 0.9161433206478384 0.9778036813176803 1.00036361962651 1.0 17.740487550987556 4.737882652620121 2.7737282576846085 0.9730363325859073 0.7798939086741984 0.7997102471205141 0.024851819497360005 0.1961769748420547 2.06674303394588 0.006492687590001932 0.08629172602228952 54686.81778743849 -4.737882652620121 -0.19314242391170888 QDAQSLHGDIPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 QDAQSLHGDIPQK 13 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 136.17 7.547e-05 1096690000.0 1009830.0 1219150.0 1284140.0 1296580.0 1251260.0 1619690.0 1471000.0 1358440.0 1606570.0 1606790.0 False True 1004393.1874826602 1259728.6707582632 1464935.7500550267 1460726.8950586573 1410600.5442009335 1507724.642640148 1399842.1102342994 1459813.690818548 1210652.350435064 1504243.2865578723 0.667706611329469 0.8374500867082966 0.973868896837298 0.9710709086169215 0.9377476082534365 1.002314357068026 0.93059555109435 0.9704638231485868 0.8048248320292483 1.0 20.52060648735418 4.600884006789884 2.4575887311378914 0.9501258931840375 0.6441403375135732 0.7218270954683097 0.05386686671694917 0.1907918028513027 1.7387125177622516 0.01283207638799264 0.10719347092242185 39891.83433315016 -4.600884006789884 -0.30598555567046426 QDAVHAILAYSQSAEELLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDAVHAILAYSQSAEELLR 19 0 E9PFZ1;Q5JPI3-2;Q5JPI3 E9PFZ1 C3orf38 Uncharacterized protein C3orf38 0 193.84 4.4121e-15 64876000.0 57914.0 80928.0 55188.0 62756.0 65891.0 72138.0 72090.0 55822.0 95466.0 72347.0 False True 57602.19745885026 83621.63955799084 62957.990697304725 70700.90316548232 74281.8282834452 67151.26985458644 68602.73128945663 59987.721098372465 71939.68347886101 67729.75252061707 0.8504711048710246 1.2346367208788525 0.9295470358929806 1.0438677321899386 1.096738516220529 0.9914589579246649 1.0128891474773043 0.885692311958649 1.062157778547359 1.0 16.047502103818246 2.3098791660944626 2.658626675822249 0.96925419590074 1.0369962595560627 0.01771118870532995 0.1037937054916863 0.7216577357085151 10.454252720972198 0.03937804353355937 0.02975650803218748 204.11699502276647 -2.3098791660944626 0.06774206365532265 QDDDWIVDDDGIGYVEDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDDDWIVDDDGIGYVEDGR 19 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 179.25 8.4221e-14 127180000.0 112220.0 125920.0 118190.0 138260.0 119950.0 138570.0 133850.0 116630.0 151970.0 151950.0 False True 111615.81998881405 130111.17107975257 134830.12467410383 155763.70182388273 135224.92150064866 128990.98205869347 127375.16414334538 125333.52283514 114519.0297936703 142252.42090906 0.7846321298121773 0.9146499598972087 0.9478230585636139 1.0949810261820452 0.9505983844527756 0.9067753029043746 0.89541649505406 0.8810642520823178 0.8050409902470534 1.0 17.11809367954354 -0.2673881579634819 7.896449100185175 0.9999981946389678 0.9139877195099352 0.09963488787575414 0.08082531102670969 0.0 0.0 0.08168173053871285 0.01925256852099206 0.5402712306350612 0.2673881579634819 -0.0860104751290326 QDDFTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDDFTAR 7 0 A0A2R8Y430;P48637;A0A2R8YF34;A0A2R8Y790;A0A2R8Y446;A0A0S2Z4J7 A0A2R8Y430 GSS Glutathione synthetase 0 77.318 0.089273 323740000.0 824310.0 986390.0 1038300.0 986320.0 757790.0 922810.0 1037900.0 816290.0 1477300.0 1062200.0 False True 819872.0065494498 1019221.3948646528 1184483.6149346135 1111188.0108703307 854290.0647267747 859018.3167610803 987692.8118369678 877205.7048366322 1113239.2098058094 994409.4866048284 0.8244812801904225 1.0249513993923556 1.1911427142341002 1.1174350464658322 0.859092834727012 0.8638476687244723 0.9932455644698313 0.882137305258058 1.11949777712469 1.0 19.923480534114073 3.2431780003257127 24.99995301692124 0.9414783069452228 1.0492946648561894 0.11438851713750442 0.11403002876971119 217.18919914882954 1175921.7018301147 0.03263460461961942 0.04275869975088867 1750.5640293521687 -3.2431780003257127 0.10781635791096655 QDDIDLQKDDEDTR ddPTM_BT-474_Trastuzumab_2h_R1 4 QDDIDLQKDDEDTR 14 1 Q9NYB0 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 0 ;;; 205.42 1.119e-08 2033000000.0 3843190.0 2960640.0 2869400.0 2714970.0 2736420.0 3787260.0 3619440.0 3533970.0 4891690.0 3818590.0 False True 3822498.692058548 3059183.1126553263 3273386.5787280956 3058684.923627852 3084886.86696795 3525455.630451091 3444353.8595964825 3797692.7865360524 3686198.5447877785 3574884.316940623 1.0692650036099163 0.8557432468957115 0.9156622392551856 0.8556038888121188 0.8629333409054166 0.9861733465736781 0.9634868024328552 1.0623260642420196 1.0311378545369037 1.0 21.769465126438583 2.2694035813706686 1.85353589923424 1.0323744969385729 0.9078711310052251 0.3700290852499666 0.06295978909362264 0.32577763988203545 2.26047060599135 0.030191863120236487 0.01987842305047124 185.95316788612 -2.2694035813706686 -0.12450336593334776 QDDS(ph)PPRPIIGPALPPGFIK ddPTM_BT-474_Trastuzumab_2h_R1 4 QDDSPPRPIIGPALPPGFIK 20 1 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 QDDS(1)PPRPIIGPALPPGFIK;QDDS(1)PPRPIIGPALPPGFIK;QDDS(1)PPRPIIGPALPPGFIK;QDDS(1)PPRPIIGPALPPGFIK 218.93 5.7878000000000005e-25 4196240000.0 3277880.0 2996060.0 2881080.0 2741800.0 2857240.0 3558160.0 3247390.0 3381100.0 4189650.0 3277100.0 True False 3260232.258286708 3095782.0459434814 3286711.0212037135 3088911.598876914 3221092.5778116994 3312192.774207697 3090301.3394655045 3633414.85087792 3157166.8959337384 3067952.6723335334 1.0626735828382006 1.00907099182491 1.071304342743915 1.0068315677527837 1.049915993443825 1.0796101269999028 1.0072845540720068 1.1843125494221811 1.029079400215241 1.0 21.548844796651213 QDDS(ph)PSGASYGQDYDLS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDDSPSGASYGQDYDLSPSR 20 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 QDDS(0.934)PS(0.066)GASYGQDYDLS(0.901)PS(0.099)R;QDDS(0.999)PS(0.001)GASYGQDYDLS(0.888)PS(0.112)R 345.28 8.69e-95 767100000.0 673610.0 694470.0 631110.0 699600.0 667160.0 760160.0 742620.0 739090.0 802220.0 765450.0 True False 669983.3586051065 717585.0141340196 719964.8022935416 788169.2882683965 752118.8714328702 707611.9284241643 706696.6335161072 794244.648822974 604523.6301972629 716598.3256652852 0.9349496567454275 1.0013769059086461 1.0046978572342198 1.099875983573734 1.0495682790419694 0.9874596452164774 0.9861823677302269 1.10835403932266 0.8436017899372387 1.0 19.450805147126946 4.748193958827948 2.1925362215689006 1.0206585239628414 0.9114361482471766 0.07747537861224618 0.07006322883780144 1.4572008586631058 7.8233367096810795 0.0170028573063976 0.31364327895519756 56000.7648825861 -4.748193958827948 -0.10922237571566484 QDDSPSGASYGQDYDLS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 4 QDDSPSGASYGQDYDLSPSR 20 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 QDDSPSGASYGQDYDLS(0.994)PS(0.006)R;QDDSPSGASYGQDYDLS(1)PSR;QDDSPSGASYGQDYDLS(0.988)PS(0.012)R;QDDSPSGASYGQDYDLS(0.996)PS(0.004)R 412.67 1.4645999999999991e-151 1458790000.0 529490.0 560820.0 558720.0 542360.0 587310.0 555184.0 551168.0 536280.0 664850.0 603910.0 True False 526639.2846718692 579486.5546771513 637382.9195187009 611022.7203905764 662100.447240901 516805.43684256123 524505.8981737713 576299.9367746626 501006.6260335699 565367.9467666374 0.9314983059859354 1.0249724236955045 1.127377176516497 1.0807523204756133 1.171096541690205 0.9141045929437508 0.9277248580741837 1.0193360625952457 0.8861602941922114 1.0 19.108830567100675 2.717551074639998 24.978263122591255 0.9545502683867131 1.0688995793259664 0.41744351405405233 0.06936034398508328 853.0882168266926 1014235.7516542943 0.023105312819619753 0.02180422996784547 521.8564728848689 -2.717551074639998 0.11434931093925327 QDEDKDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDEDKDKR 8 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 0 ; 93.551 0.006180399999999999 99145000.0 395790.0 250560.0 239970.0 212700.0 232920.0 225770.0 299880.0 318450.0 504080.0 343010.0 False True 393659.11061640293 258899.7381332818 273755.6901433688 239627.79819137778 262580.98137499904 210163.05130541403 285373.6587471529 342214.3560563343 379856.2383259414 321118.8081343642 1.2258986413890962 0.8062428346612187 0.852505936148164 0.74622785125408 0.8177066391736498 0.6544713233286432 0.8886855939865888 1.065693903276893 1.1829149483109689 1.0 18.292747641548207 1.7403274622170082 3.6816062977118595 1.0992827100893605 0.8380687259020142 0.3371481642635804 0.14559648993046004 0.21494329254372774 6.247995380657015 0.0791393240838279 0.03879974864277773 54.99553892174133 -1.7403274622170082 -0.2612139841873463 QDEEKPLHALLHGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDEEKPLHALLHGR 14 1 P24593;C9JXX4 P24593 IGFBP5 Insulin-like growth factor-binding protein 5 0 ; 200.55 1.2312e-08 630230000.0 415050.0 410450.0 396150.0 362940.0 374820.0 478970.0 501650.0 218608.0 544330.0 360360.0 False True 412815.41691638983 424111.5801277357 451924.4766024733 408888.1667869234 422551.10526780516 445859.93127410254 477383.27301090176 234921.63902893156 410187.1651483094 337361.5162802818 1.2236588851865975 1.2571427375711148 1.339585147664003 1.2120178119166884 1.252517210400333 1.321608748354331 1.4150495832319212 0.696349843393985 1.2158682758810095 1.0 18.36393588541219 1.7519581752253293 24.999999999994902 0.9488686752958959 1.2864472653796513 0.5541130000772716 0.13029185927457895 2.637453390712839 4928.776221009111 0.05586383667743111 0.030979499625777396 56.48825711186572 -1.7519581752253293 0.33757859008375535 QDEFKR ddPTM_BT-474_Trastuzumab_2h_R1 5 QDEFKR 6 1 P30040;F8W1G0 P30040 ERP29 Endoplasmic reticulum resident protein 29 0 ;;;; 105.95 0.052177 5641260000.0 7007120.0 7147260.0 6768560.0 6230930.0 6210330.0 7179640.0 7952530.0 7843220.0 9893590.0 7352920.0 False True 6969394.444484219 7385152.228490102 7721514.414621819 7019765.099128352 7001178.7139901975 6683328.385854642 7567835.742285226 8428520.903464159 7455447.311813898 6883650.350448481 1.0124561954298203 1.0728540603473486 1.121717987044294 1.0197736290703672 1.0170735521937222 0.9708988756843544 1.0993928158759791 1.2244260638419886 1.0830659508044542 1.0 22.714742388014745 2.00865153078656 24.70681757052914 1.1360525378706752 1.0394180611595305 0.13877575918654828 0.06582248641752914 197.80203739910584 564874.861357595 0.024620078148136302 0.018154810056483048 102.01206308276943 -2.00865153078656 -0.09663447671114467 QDEHGYISR ddPTM_BT-474_Trastuzumab_2h_R1 31 QDEHGYISR 9 0 P04792 P04792 HSPB1 Heat shock protein beta-1 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 145.28 9.7558e-05 110396842200.0 44571821.5 47603348.900000006 46076322.5 45672939.9 43980663.8 53539022.4 54267061.1 45118260.0 57770232.599999994 55308563.6 False True 44331851.76543891 49187797.59130447 52563468.20542532 51455129.40838794 49581340.641112365 49837995.79879045 51641956.03428794 48485213.667082 43533532.85718662 51778723.7190044 0.8561789202457252 0.9499615683507283 1.0151557325105118 0.9937504386478786 0.9575620463374703 0.9625188150494786 0.9973586122852568 0.9363925988250347 0.8407610255794787 1.0 25.62585606925343 -0.9500481260644396 7.401366226034032 1.000000000825911 0.951246869173844 0.07418827715387144 0.0544531589572015 7.833353360812702e-10 1.0583658608191523e-10 0.05256874375213693 0.012390571543897425 0.11218941254354932 0.9500481260644396 -0.04875313165206685 QDELGER ddPTM_BT-474_Trastuzumab_2h_R1 2 QDELGER 7 0 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ; 116.25 0.01279 583070000.0 1162710.0 1296680.0 1189310.0 1266600.0 1244350.0 1228800.0 1252890.0 1273800.0 1521260.0 1364150.0 False True 1156450.098549225 1339839.2099403883 1356754.5103321644 1426951.4301325753 1402810.596659709 1143855.9482840633 1192282.9241954102 1368857.424225337 1146365.856839632 1277088.7790924262 0.9055361831391752 1.0491355275179508 1.0623807307244162 1.1173470893281596 1.0984440703148517 0.8956745740863482 0.9335943935258095 1.0718576865095684 0.8976399100885581 1.0 20.284427389356495 2.7514080212621144 24.79818117060046 0.9709075241725156 1.051521894709856 0.2603011982858303 0.07171318438760997 1095.348734677133 2114250.2512209257 0.022904096899187536 0.024148632519133403 564.1674443055479 -2.7514080212621144 0.08061437053734033 QDENDDDDDWNPCK ddPTM_BT-474_Trastuzumab_2h_R1 3 QDENDDDDDWNPCK 14 0 Q14974;Q14974-2 Q14974 KPNB1 Importin subunit beta-1 0 ;; 332.53 4.160799999999998e-68 2245640000.0 2723320.0 2075540.0 1850440.0 1834000.0 1803580.0 2610790.0 2436910.0 2319900.0 3320560.0 2381320.0 False True 2708657.9477092936 2144623.0942095765 2110965.8676871867 2066184.2119557427 2033255.2223438104 2430312.2324385983 2319027.353399773 2493022.7182135023 2502252.4812243837 2229342.1188493776 1.2150032625352736 0.9619981949277813 0.9469008142979473 0.9268134282692129 0.9120427076456202 1.0901477220073097 1.0402294622221036 1.1182773146995568 1.122417443275087 1.0 21.08818660148628 2.7104035989065824 24.517331056005556 1.0816252002715148 0.9846659757298881 0.1764657899288683 0.08664448071844975 869.0477998897576 756709.7434732891 0.028189762088451836 0.026583037142538422 513.3382182879834 -2.7104035989065824 -0.09695922454162664 QDFVQHFSQIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDFVQHFSQIVR 12 0 P14324-2;P14324;A0A087WVN4;A0A087X1D8;A0A087WTP2 P14324-2 FDPS Farnesyl pyrophosphate synthase 0 ; 188.4 9.251e-06 2027900000.0 1042130.0 1922040.0 2197080.0 2401500.0 2081670.0 2234800.0 2273600.0 2026070.0 1841860.0 2285000.0 False True 1036519.287871527 1986013.939502286 2506409.7666382943 2705529.653768657 2346758.3354752455 2080313.536153339 2163617.2820045534 2177265.631574999 1387958.2826595327 2139169.3437130805 0.48454288619917313 0.9284042637106262 1.1716743108742262 1.2647571178598287 1.0970418692527824 0.9724866066668747 1.0114287063636753 1.0178089163318844 0.648830484944391 1.0 21.028619264854044 -3.0613444786552635 10.11830104882664 0.9999649768257524 0.981231911843043 0.0 0.22197448015250645 0.0 0.0 0.0 0.04942401428623475 0.0008682714506146517 3.0613444786552635 -0.018733064982709324 QDGGQNESFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDGGQNESFKR 11 1 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ; 137.84 0.00011237 271230000.0 269210.0 278855.0 264132.0 269349.0 239829.0 323137.0 320512.0 291184.0 381733.0 347845.0 False True 267760.6032720426 288136.52010359307 301319.4897234994 303448.5557830247 270369.8015721475 300799.2997726783 305007.6100852586 312913.62868239207 287660.01711013436 325645.2342949129 0.8222463437912668 0.884817248216349 0.9252998600637174 0.9318378524410208 0.830258738954225 0.9237024470017778 0.9366254376351035 0.960903448686767 0.8833539902187602 1.0 18.312941587923845 7.999999964232226 0.049620026441175816 1.1697860422564632 0.4355580148496499 0.46176093088478765 0.0386140455534207 458.1305605802139 1.715681065094411 6.0082681718377025 25.82889979732269 99999991.7641661 -7.999999964232226 -0.7342280274068134 QDGPMPKPHSVSLNDTETR ddPTM_BT-474_Trastuzumab_2h_R1 3 QDGPMPKPHSVSLNDTETR 19 1 Q9P0L0-2;Q9P0L0 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 ;; 254.71 3.9346999999999998e-31 1408025000.0 301077.0 370575.0 468922.0 394008.0 484138.0 608489.0 483972.0 386973.0 567430.0 515699.0 False True 299456.03488479904 382909.3648576816 534942.1416569098 443889.3724014502 545790.1045892544 566425.5876590345 460560.42540741945 415850.8902690781 427594.47967245086 482786.64830787375 0.6202657756472079 0.7931233521054206 1.1080301071536187 0.9194317489045001 1.1304995829984164 1.1732420307071627 0.9539626396497183 0.8613554076663059 0.885680002069513 1.0 18.88102625267065 4.454233004424969 4.2357902914135455 0.996369236612167 0.6488232377746879 0.6017609745865442 0.1009451527886104 0.14007942285439523 5.739319696021233 0.02771576754931443 0.09671956040887911 28459.876058881586 -4.454233004424969 -0.34754599883747916 QDHAQQLATAAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 QDHAQQLATAAEER 14 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;F5H4J1;F5H6Y5 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 156.0 5.6899e-06 805110000.0 352390.0 462540.0 476680.0 517780.0 483380.0 484190.0 509820.0 340740.0 463890.0 410290.0 False True 350492.77139420924 477935.3642886654 543792.4006231653 583330.8949108205 544935.5777822722 450719.0849606613 485158.0588984701 366167.749042661 349570.5253075321 384104.94093305874 0.9124922229399091 1.2442833021821484 1.4157391448862842 1.5186758428407787 1.4187153553883673 1.1734269386532363 1.2630872639126576 0.9533013247712327 0.9100911965838387 1.0 18.55114099652962 1.7698700072889604 3.048156452273939 0.9391917278938271 1.298560144807273 0.4649734400684278 0.1579895883713868 0.21367834243319106 3.930580413359597 0.09591165818117019 0.04634850873435238 58.86674294726553 -1.7698700072889604 0.3593684169134459 QDHPSSMGVYGQESGGFSGPGENR ddPTM_BT-474_Trastuzumab_2h_R1 4 QDHPSSMGVYGQESGGFSGPGENR 24 0 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;Q01844-4 B0QYK0 EWSR1 RNA-binding protein EWS 0 ;;; 349.52 7.118799999999996e-102 3972500000.0 868470.0 1380100.0 1630820.0 1817370.0 1856130.0 1780620.0 1625940.0 1388040.0 1273420.0 1665120.0 False True 863794.2540160875 1426035.7942119336 1860425.2806584488 2047448.855660856 2092497.1533555596 1657529.930528622 1547287.0705060184 1491622.5931243023 959602.7039537764 1558850.6160190466 0.5541225343465068 0.9147995193110343 1.193459630794871 1.3134349338037143 1.3423333396110309 1.0633026112287653 0.9925820053607453 0.9568733384688075 0.6155834908699498 1.0 20.572051251141424 1.6039556504432309 2.599160078296233 0.8063830967294487 1.0784390836381896 0.14320257799308456 0.22905229963347903 0.43967478548422934 6.766000263469381 0.17045602520963662 0.06609854636064612 40.174978261738254 -1.6039556504432309 0.2720559869087409 QDIAFAYQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDIAFAYQR 9 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YKS4;H0YMM1;H0YMW4;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8 P07355-2 ANXA2 Annexin A2;Annexin 0 97.565 0.015366 197040000.0 124410.0 182830.0 170450.0 118270.0 117450.0 160460.0 160730.0 110800.0 218190.0 174330.0 False True 123740.19038325039 188915.38602693094 194447.87842204087 133242.96987350367 132406.5613193096 149367.77788221076 152954.87585177342 119068.45863099968 164419.99809620902 163204.11014857786 0.7581928559924117 1.157540614969476 1.1914398371770127 0.8164192050813049 0.811294281735731 0.9152206874338473 0.9371999008635644 0.7295677696021384 1.0074501061678178 1.0 17.31631786517945 3.719126549926065 24.96544424857255 0.8695265384662261 1.047906073590225 0.1879995264761437 0.13604012646195254 1009.9265104053716 1297374.6234119365 0.03531115956482669 0.05479360594710726 5237.530317816032 -3.719126549926065 0.17837953512399896 QDKDDIINIFSVASGHLYER ddPTM_BT-474_Trastuzumab_2h_R1 1 QDKDDIINIFSVASGHLYER 20 1 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 172.0 4.2080000000000015e-12 196970000.0 251520.0 292870.0 279900.0 248630.0 289240.0 348150.0 303350.0 337630.0 367570.0 317760.0 False True 250165.84426649922 302618.0009063464 319307.4870655869 280106.53250739176 326072.99954020535 324083.209956947 288675.8015904653 362825.6650504013 276987.2986856576 297480.28475197725 0.8409493236671929 1.0172707786623665 1.0733736097227686 0.9415969624371217 1.0961163352793855 1.0894275236664837 0.9704031372403296 1.2196628941407175 0.9311114479959385 1.0 18.18243453266226 4.736235564562921 2.9994865798532078 1.053293908896503 0.8066345518634831 0.33121132622367233 0.08269933213759126 0.39892977049784123 5.3048530398666465 0.01971988232933876 0.2351090152492589 54479.80752508372 -4.736235564562921 -0.2466593570330199 QDKIEEQSQSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QDKIEEQSQSEK 12 1 Q9Y5P4-3;Q9Y5P4;Q9Y5P4-2;A0A2R8Y7C5;A0A2R8YE18;A0A2R8Y7Q9;A0A2R8YE59;A0A2U3TZL3;A0A2R8YEK8;A0A2R8YFA1 Q9Y5P4-3 COL4A3BP Collagen type IV alpha-3-binding protein 0 111.74 0.0012304 93815000.0 108610.0 195510.0 76413.0 229960.0 76846.0 116290.0 105850.0 101480.0 159550.0 147000.0 False True 108025.25582770529 202017.43216170944 87171.28620629756 259072.91242166996 86631.882598073 108251.146017215 100729.63111373261 109052.95290499859 120231.04036046646 137618.33414696815 0.7849626759203522 1.467954349352659 0.6334278549920815 1.8825464937324092 0.6295082928816399 0.7866041010321289 0.7319492111142647 0.7924304096613796 0.8736556877084917 1.0 17.070313159744973 QDKPLS(ph)PAGSSQEAADTPDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDKPLSPAGSSQEAADTPDTR 21 1 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 1 QDKPLS(0.999)PAGS(0.001)SQEAADTPDTR;QDKPLS(0.847)PAGS(0.117)S(0.037)QEAADTPDTR 294.26 4.9175e-55 1929220000.0 1653040.0 1327610.0 1317550.0 1242310.0 1277960.0 1695190.0 1685730.0 1580500.0 2266900.0 1648200.0 True False 1644140.2163100082 1371798.6962928073 1503049.5876501028 1399586.3186230864 1440700.6309376333 1578005.5053480298 1604184.7997860413 1698444.935616383 1708252.8699037358 1543010.464904987 1.065540547977585 0.8890404358840676 0.9741020050325162 0.9070491422164579 0.9336946596965215 1.0226797168515624 1.0396460920210422 1.100734553813261 1.1070909165926648 1.0 20.55731641581826 2.4271362611509377 2.162852246901955 1.0758136968966323 0.9491675565697338 0.47346422572940394 0.05325337693730168 0.23169768764835216 2.211313075966672 0.02077277042564727 0.01648515859080276 267.3845203742436 -2.4271362611509377 -0.12664614032689847 QDKPMDTSVLS(ph)EEGGEPFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QDKPMDTSVLSEEGGEPFQK 20 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 QDKPMDTSVLS(1)EEGGEPFQK 198.09 9.6319e-22 715070000.0 429910.0 325310.0 318400.0 281030.0 294730.0 399450.0 427330.0 391630.0 564700.0 478640.0 True False 427595.4123274909 336137.74669595226 363227.9524175876 316608.3691853446 332262.11849842576 371836.9617041577 406658.4153408718 420855.4192568454 425537.251592325 448092.7854156795 0.9542564090399851 0.7501521060735878 0.8106087940707061 0.706568772116334 0.7415029416066098 0.8298213535377901 0.907531717931208 0.9392148969022855 0.9496632515463721 1.0 18.77343797278884 2.167531949582983 1.9931440151737754 0.9569088978577454 0.7862467152892425 0.5815763912493254 0.06405061510678278 0.23799949442299417 1.8702581093101707 0.03271255744030418 0.019930869837363783 147.07266078301774 -2.167531949582983 -0.17066218256850285 QDLPALEEKPR ddPTM_BT-474_Trastuzumab_2h_R1 6 QDLPALEEKPR 11 1 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;;;;; 174.9 9.5371e-06 5197810000.0 3674240.0 3469340.0 3255850.0 3283240.0 3250150.0 4131660.0 4060610.0 3836330.0 4784480.0 3962300.0 False True 3654458.300086444 3584814.8846396864 3714245.3796444777 3698897.84736182 3664037.3373516737 3846048.0690814825 3864182.7812634273 4122616.4250890203 3605409.0127473767 3709422.6217043037 0.985182512961382 0.9664077810019486 1.001300137091944 0.9971626920370567 0.9877648655919995 1.0368319982138907 1.0417208216323484 1.1113903282325037 0.9719596229482372 1.0 21.822763215569704 2.6776101433706097 3.0949326787659555 1.0476121535641454 0.9870509926426364 0.2357087145262159 0.035837664255876284 0.2797142315051861 5.319456736408749 0.012333532066787408 0.011845720519284935 476.00349706270214 -2.6776101433706097 -0.06056116092150898 QDLPDAMKPHEIQEK ddPTM_BT-474_Trastuzumab_2h_R1 5 QDLPDAMKPHEIQEK 15 1 P62330 P62330 ARF6 ADP-ribosylation factor 6 0 ;;;; 239.33 5.0752e-18 3989460000.0 5215800.0 3828260.0 3843860.0 3576470.0 3344980.0 5438920.0 5270760.0 4862630.0 7346040.0 5134250.0 False True 5187718.712329861 3955681.319867956 4385042.076569942 4029250.7352962717 3770943.3757502344 5062940.262240519 5015793.202541487 5225504.14253482 5535706.873892829 4806577.76934743 1.0792956987844964 0.8229724992892402 0.9123002449964065 0.8382784859930201 0.7845380968967866 1.053335763030397 1.0435269006835317 1.0871568906798872 1.1516940200562675 1.0 22.19657864577211 2.6294116925696898 6.5435131642377895 1.0737744908447422 0.8829377777419429 0.5445546529271075 0.08212709956766809 0.17853456141322585 9.35001932159411 0.026065040182839668 0.024525048900744553 426.002053489317 -2.6294116925696898 -0.19083671310279926 QDLPNAMNAAEITDKLGLHSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDLPNAMNAAEITDKLGLHSLR 22 1 P61204;P61204-2;H0YGG7;P84077 P61204;P84077 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 0 ; 290.56 1.3504e-55 5067200000.0 911930.0 1262150.0 1297930.0 1404140.0 1397040.0 1422100.0 1542650.0 1274150.0 1824150.0 1532630.0 False True 907020.2702049486 1304159.8997642144 1480667.2621902006 1581903.9800302817 1574944.763095177 1323793.5742633182 1468026.1260047175 1369233.5430026024 1374612.674857694 1434816.2412494435 0.6321508247042924 0.9089386238258266 1.0319560230938214 1.1025132937251627 1.0976630441008315 0.9226223792327257 1.0231457407579627 0.9542919181136872 0.9580409221327715 1.0 20.45243455025735 4.696696614685716 2.5827140309518133 1.0099671001663002 0.5725020568675823 0.8085523285919591 0.05559674648457418 0.19094301419989604 1.7547711630315783 0.015049305596392712 0.1739478199273427 49738.95019533259 -4.696696614685716 -0.43746504329871794 QDLPSLDEKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 QDLPSLDEKPR 11 1 Q92598-2;Q92598;Q92598-4;Q92598-3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ;;; 182.23 5.3578e-06 3392080000.0 3160480.0 2998050.0 2662040.0 2590810.0 2677220.0 3280510.0 3252240.0 3244670.0 4139440.0 3374470.0 False True 3143464.326842338 3097838.2818905036 3036832.0931335296 2918806.280358265 3018148.0978738354 3053736.065189903 3094916.726436708 3486803.75150041 3119330.477654209 3159108.4355708812 0.9950479355021834 0.9806052388102641 0.9612940343988999 0.9239335527369477 0.9553797089995827 0.9666449023419051 0.9796804350204038 1.1037303158827187 0.987408486056135 1.0 21.591086027388847 1.9531217827814706 12.269108198287118 1.0418856846381568 0.9631731097990915 0.4252870327824605 0.03388642317698516 1.173422258086175 305.8999260175029 0.013844616498200143 0.008889381831833586 89.7680482477998 -1.9531217827814706 -0.07871257483906524 QDPDVPFWR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDPDVPFWR 9 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 ; 83.005 0.039493 196640000.0 119944.0 139068.0 135058.0 128646.0 126698.0 151813.0 129774.0 134674.0 140591.0 147139.0 False True 119298.23483103103 143696.7943116189 154072.99245481956 144932.57040962842 142832.2393021193 141318.52463936227 123496.33583517728 144724.05774071525 105944.23187288197 137748.4630479645 0.8660585547839541 1.043182559950474 1.1185097027265618 1.0521538113943412 1.0369062285100388 1.0259172517239241 0.8965351271627287 1.050640090919358 0.7691137129856165 1.0 17.071676696206385 2.312039487979057 8.977518193952571 0.9446543339677107 1.0311299347023484 0.1961745564674814 0.09107671320693056 0.5323134896473909 59.56699910963133 0.031098055321244628 0.02597033530504647 205.13486880604648 -2.312039487979057 0.08647560073463767 QDPGTELLHCENEDLICFK ddPTM_BT-474_Trastuzumab_2h_R1 1 QDPGTELLHCENEDLICFK 19 0 Q9NQE9 Q9NQE9 HINT3 Histidine triad nucleotide-binding protein 3 0 228.63 9.9076e-20 158050000.0 110490.0 104440.0 91801.0 91138.0 94771.0 125080.0 99698.0 102680.0 142990.0 113010.0 False True 109895.134116593 107916.2222646868 104725.78285140371 102676.06145541025 106839.52509827413 116433.51400664911 94875.2268566547 110342.50299847525 107752.03046783505 105797.60504727121 1.0387298849297297 1.0200251907070013 0.989869126098 0.9704951393704401 1.0098482385356207 1.100530715743761 0.8967615742744243 1.0429584199866655 1.0184732482336494 1.0 16.690947443802433 4.4965209842904885 4.471183061837677 1.0039744536620432 1.035805168587773 0.04840766515540729 0.04892428229434535 0.6644689423745909 32.243238368734275 0.01142076263076978 0.044526745827710754 31370.467026781625 -4.4965209842904885 0.03183071492572975 QDPSVLHTEEMR ddPTM_BT-474_Trastuzumab_2h_R1 8 QDPSVLHTEEMR 12 0 P50502;Q3KNR6;Q8NFI4;F8WAQ7 P50502 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 0 ;;;;;;; 212.18 2.3286e-08 10939430000.0 8550510.0 9587720.0 9450460.0 10384820.0 9841020.0 10432200.0 10251940.0 9329410.0 10342960.0 10516030.0 False True 8504475.00421097 9906841.46430086 10781002.62312913 11699537.147220423 11094215.564704591 9711046.568757333 9756014.495986007 10025617.947984064 7794076.096563404 9844887.962173762 0.8638468042386104 1.0062929616228378 1.095086370160039 1.1883870280873317 1.1269011498486343 0.9864049856198793 0.9909726279741093 1.018357749372538 0.7916876379406216 1.0 23.230943357235052 1.392951788799449 6.741171590446773 0.8951250702464162 1.0411599675611818 0.2509725205638673 0.09588623588109042 0.295557950211544 18.37034958832273 0.06748807992288926 0.02477189293356956 24.714497731799515 -1.392951788799449 0.1460348973147656 QDPVTYIS(ph)ETDEEDDFMCKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QDPVTYISETDEEDDFMCKK 20 1 P35251-2;P35251;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 QDPVT(0.286)YIS(0.688)ET(0.026)DEEDDFMCKK 92.38 0.0010172 258970000.0 101870.0 96938.0 92630.0 106500.0 82092.0 117160.0 125820.0 109620.0 130370.0 122460.0 True False 101321.54323882097 100164.52272974157 105671.49884560674 119982.88908030892 92545.92960259492 109061.00496497468 119733.6059209242 117800.4010390811 98242.06036849895 114644.49795671932 0.8837889741300272 0.8736967278408403 0.9217319690780095 1.0465647389864705 0.8072426610262006 0.9512973313917557 1.044390337564443 1.0275277325873344 0.8569278257521558 1.0 16.80680759288776 2.477348393067598 24.9999999529292 0.9920775008932953 0.9099804317577059 0.1872708193277125 0.073261499615164 12.841654780554334 1413701.789467709 0.025227705317038024 0.021320844514210947 300.15694264954834 -2.477348393067598 -0.08209706913558934 QDS(ph)DEDDGPQRVEEVDQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDSDEDDGPQRVEEVDQGR 19 1 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 QDS(1)DEDDGPQRVEEVDQGR 154.71 2.0037e-08 394950000.0 157150.0 143990.0 129040.0 132240.0 138680.0 172300.0 179380.0 160610.0 192570.0 171820.0 True False 156303.92186100653 148782.6201062068 147207.71036421324 148981.57044112746 156340.07597924102 160389.3065505728 170702.70410185485 172595.53376105468 145113.7038057977 160854.30049749723 0.9717111782375909 0.9249527034468173 0.9151617949220058 0.9261895391068236 0.9719359413811479 0.9971092227843068 1.0612256158144235 1.0729929708266652 0.9021437621312186 1.0 17.295394981913162 2.861367966965915 2.2592322847512962 1.0224680473940568 0.9329653410717839 0.3291857947293113 0.04629019915320073 0.3002719257571872 3.015655945343301 0.01615834429796059 0.017344071632446893 726.7214297424865 -2.861367966965915 -0.08950270632227297 QDS(ph)DSDVVDIEEAEHDFMGEAHPVVFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 QDSDSDVVDIEEAEHDFMGEAHPVVFSR 28 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 QDS(0.993)DS(0.007)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.975)DS(0.025)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.999)DS(0.001)DVVDIEEAEHDFMGEAHPVVFSR 280.89 1.5418999999999993e-61 240494000.0 117601.6 127054.4 109057.1 113852.0 112896.1 165829.0 156728.4 126637.1 188441.0 132273.0 True False 116968.44605236602 131283.32889799346 124411.39173869371 128265.65152649133 127272.74914738971 154365.6315494775 149146.84853137002 136087.40345216406 142002.24053003246 123831.22389538743 0.9445795847998799 1.0601795312053248 1.004685149876225 1.0358102544060301 1.0277920636148252 1.2465808436157064 1.204436521255489 1.0989748721786892 1.1467401844465004 1.0 16.918015608692844 2.8771263916787517 8.405245730405074 1.1467801481752307 1.0165181986995955 0.4640486505363207 0.06687239354408794 0.2584622747773899 16.626457611985806 0.019782665812043174 0.021006181462424386 753.5748428984874 -2.8771263916787517 -0.13026194947563519 QDS(ph)LEPVLRDPCYLINEGICNR ddPTM_BT-474_Trastuzumab_2h_R1 4 QDSLEPVLRDPCYLINEGICNR 22 1 D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3;E7EWD5 D6RD37 TSC22D3 1 QDS(1)LEPVLRDPCYLINEGICNR;QDS(1)LEPVLRDPCYLINEGICNR;QDS(1)LEPVLRDPCYLINEGICNR;QDS(1)LEPVLRDPCYLINEGICNR 142.78 6.8081e-08 740344000.0 175714.0 174744.0 154026.0 191517.0 146986.0 174742.0 192303.0 154408.0 196920.0 194384.0 True False 174767.97534766066 180560.24840502127 175711.5219820079 215763.0325633195 165703.7958457222 162662.4968384226 183000.56922120068 165930.70902793697 148391.70459281135 181978.24669948476 0.960378388721752 0.9922078692361228 0.965563330611567 1.1856528814656966 0.910569251276292 0.8938568196397683 1.0056178281759367 0.9118161760397199 0.8154365001541225 1.0 17.473406478407743 QDTVSEPVTPASLAALQSDVQPVGHDYVEEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDTVSEPVTPASLAALQSDVQPVGHDYVEEVR 32 0 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ; 178.85 1.9237e-19 251910000.0 374780.0 358110.0 341750.0 377650.0 357770.0 388780.0 368540.0 354040.0 407870.0 384330.0 False True 372762.22612197243 370029.47486793343 389865.4294557491 425460.45127867354 403329.8888310721 361904.5536896796 350712.3122404815 380460.26257869235 307355.9036779909 359801.7303585323 1.0360212157693778 1.0284260570376065 1.08355629381565 1.1824858397838003 1.1209781799247192 1.005844394714422 0.9747377031539192 1.0574164337663814 0.8542368692104938 1.0 18.456842599252084 2.6231448502197265 4.983245357650343 0.9857641728954053 1.0912800584019158 0.4445212096829174 0.06254642570469368 0.24909864212038882 9.243750857191438 0.021588409180720594 0.02026560305464172 419.89900953680444 -2.6231448502197265 0.10551588550651048 QDVEALWENMAVIDCFASDHAPHTLEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QDVEALWENMAVIDCFASDHAPHTLEEK 28 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 ; 323.61 1.2015999999999991e-83 146304000.0 73122.0 77528.0 81883.0 80680.0 79447.0 106650.0 95402.0 35337.0 134516.0 87851.0 False True 72728.31927661799 80108.47261333432 93411.41466020525 90894.07972769324 89564.10453073813 99277.53652709589 90787.0407889685 37974.026377650145 101366.33422205274 82244.27396697497 0.8842964472617498 0.9740310023953974 1.1357801601812962 1.105172133493349 1.0890010964982488 1.2071057562859706 1.1038706576147035 0.46172243423169546 1.2325032410494157 1.0 16.327627618190466 QDVVGKT(ph)PPSTTVGSHS(ph)PPETPVLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QDVVGKTPPSTTVGSHSPPETPVLTR 26 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-4;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 2 QDVVGKT(0.998)PPS(0.001)T(0.001)T(0.001)VGS(0.003)HS(0.995)PPETPVLTR 115.13 0.019138 270770000.0 150890.0 160100.0 160040.0 144710.0 171350.0 201030.0 229920.0 181400.0 264000.0 236790.0 True False 150077.62500545513 165428.8317175061 182572.24090738286 163030.27116254938 193170.40682897993 187133.26927371853 218797.891220306 194936.98913053554 198940.73741875973 221677.8594738817 0.6770077325793442 0.7462577999901568 0.8235925831325239 0.7354377724030566 0.8714014439125323 0.8441676120378037 0.9870083180142083 0.8793705857372879 0.8974316961148713 1.0 17.758105159742087 6.849742797287891 0.18169627046409312 1.0118506630922546 9.268787625218759e-10 0.7846765799893751 0.046226161906321124 16.14522414276374 0.26284177903794653 0.10465758188652582 4.169907521261551 7075266.4097885825 -6.849742797287891 -1.0118506621653758 QDWVDGEPTEAEKDFWELASLDCYNHLAEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 QDWVDGEPTEAEKDFWELASLDCYNHLAEWK 31 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 244.26 2.6931999999999995e-46 96196000.0 256800.0 195530.0 183850.0 181190.0 154100.0 257420.0 226630.0 230250.0 347030.0 224820.0 False True 255417.41733316222 202038.0978496192 209734.4819471532 204128.63542217054 173723.72157774045 239625.16130149996 215667.04108932638 247432.42418580933 261509.10646375854 210471.79512191442 1.2135470084493427 0.9599295607878954 0.996496855199367 0.9698621865411009 0.825401434320984 1.1385143608562784 1.0246838107899572 1.175608465934762 1.2424900272850388 1.0 17.683267388184156 2.1714037444586647 1.8155146695256512 1.1476973481531911 0.9955565025480619 0.17986136457583768 0.11389834571733919 0.5006280006946924 3.241899746511101 0.05978336512695227 0.03542867562971451 148.38969577765386 -2.1714037444586647 -0.1521408456051292 QDYINLDESEAAAFDDEWRR ddPTM_BT-474_Trastuzumab_2h_R1 2 QDYINLDESEAAAFDDEWRR 20 1 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 0 ; 182.15 7.758699999999998e-17 231530000.0 64722.0 83198.0 73382.0 79614.0 73221.0 76565.0 81225.0 67037.0 85766.0 78733.0 False True 64373.54394329021 85967.19513574688 83713.54775222173 89693.1242369926 82545.26033513134 71272.24176462342 77295.8364403678 72039.64134698856 64630.11850552036 73708.1925332875 0.873356702027639 1.166318046625863 1.1357427834689569 1.2168677748607948 1.1198926129935003 0.9669514244625661 1.0486736112198123 0.9773627445070587 0.8768376524269352 1.0 16.16953736074596 2.74029252753782 24.398123103906283 0.9792163063286786 1.1141923594624827 0.31567744263512965 0.09362135901113458 132.38649157780318 1864993.3305983734 0.029210127621595267 0.029538300393855212 549.911152545792 -2.74029252753782 0.13497605313380412 QDYTSPGTQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QDYTSPGTQK 10 0 Q6P1X5;H0YC37 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 0 62.823 0.082585 420170000.0 286020.0 534170.0 467100.0 449510.0 397020.0 354130.0 388410.0 308870.0 364100.0 525040.0 False True 284480.10009980935 551949.5255374166 532863.619894018 506417.9199107014 447578.1436780956 329649.82663235324 369621.1244297101 331919.4478100802 274372.4336900399 491531.497690641 0.5787627068384839 1.122917917021874 1.0840884508878221 1.0302857950914666 0.9105787640892778 0.6706586010889327 0.751978512397066 0.6752760491841012 0.5581990879101787 1.0 18.906924342897057 2.8554177953966 4.138520842456434 0.7105288928053767 0.9748550279075642 0.26683603735404793 0.17497629273650092 0.26487473824363156 7.70657094037399 0.0527353844056212 0.05627786635653329 716.8326784307217 -2.8554177953966 0.2643261351021875 QEAEDLSLSAPS(ph)SPEISPQSSPRPHRPNNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEAEDLSLSAPSSPEISPQSSPRPHRPNNDR 31 2 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 QEAEDLSLSAPS(0.401)S(0.401)PEIS(0.115)PQS(0.041)S(0.041)PRPHRPNNDR 44.721 0.05994500000000001 137100000.0 10424.0 9934.6 9202.8 10572.0 7767.2 9778.4 10087.0 9886.1 12689.0 11746.0 True False 10367.878342215276 10265.267155407484 10498.474247828439 11910.414116028425 8756.306880198745 9102.442223877668 9599.053273917998 10623.850982598618 9561.965973888804 10996.360223743464 0.9428463720048782 0.9335149946472837 0.9547226567896544 1.0831233129587121 0.7962913820604047 0.8277686469586156 0.8729300494532377 0.9661243144490193 0.869557360738556 1.0 13.42473845274395 3.2314625381988114 24.999999715080833 0.8886586450416841 0.9736328345657399 0.29428021064756016 0.06793557559450582 231.04557651737062 813760.6453674512 0.0202546296006458 0.02469020275865288 1703.9723300524427 -3.2314625381988114 0.08497418952405578 QEAEDLSLSAPSS(ph)PEIS(ph)PQSSPRPHRPNNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEAEDLSLSAPSSPEISPQSSPRPHRPNNDR 31 2 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 2 QEAEDLS(0.018)LS(0.031)APS(0.384)S(0.392)PEIS(0.392)PQS(0.391)S(0.391)PRPHRPNNDR 42.468 0.075365 145490000.0 17035.0 15823.0 20018.0 17522.0 13162.0 20917.0 19022.0 20556.0 18314.0 15578.0 True False 16943.28545276642 16349.65898979451 22836.360400424845 19740.283403428868 14838.10268271396 19471.057023321733 18101.833188903354 22089.993101252996 13800.760095027152 14583.798703003205 1.161788214292709 1.1210836986132884 1.5658718873925632 1.3535762393212272 1.017437430733214 1.3351155909270818 1.2412289525894025 1.514694048588593 0.9463076374048687 1.0 13.832078932971166 1.2146802602697058 24.995751220231586 0.9731532501069488 1.295604934666136 0.3831785193774657 0.16003314100484803 275.48197892337026 288341.49326959014 0.15569775842003014 0.03900868059450215 16.393823696926212 -1.2146802602697058 0.32245168455918727 QEAEDLSLSAPSSPEIS(ph)PQSSPRPHRPNNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEAEDLSLSAPSSPEISPQSSPRPHRPNNDR 31 2 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 QEAEDLSLSAPS(0.054)S(0.23)PEIS(0.505)PQS(0.105)S(0.105)PRPHRPNNDR;QEAEDLSLSAPS(0.013)S(0.052)PEIS(0.832)PQS(0.051)S(0.051)PRPHRPNNDR 140.49 1.3237e-08 380200000.0 42539.0 50554.0 58499.0 61775.0 55251.0 57647.0 59387.0 40486.0 56157.0 61843.0 True False 42309.97475052718 52236.659329461654 66735.15071757678 69595.70866606658 62286.88735166608 53661.99857644157 56514.22392962901 43507.27090374239 42317.85981524735 57896.12679354394 0.7307911097646209 0.9022479088408834 1.152670384247854 1.2020788353294003 1.0758385888883288 0.9268668138682029 0.9761313417589617 0.7514711831913761 0.730927303067297 1.0 15.821179215801026 1.8573270737824634 4.57302254622094 0.8050574804110768 1.0094134912076522 0.21755204222411118 0.1430835244549055 0.3104289995504553 9.621820807829145 0.07219572668992996 0.041145061488653274 71.99910100567067 -1.8573270737824634 0.2043560107965754 QEAGDS(ph)PPPAPGTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 QEAGDS(1)PPPAPGTPK;QEAGDS(1)PPPAPGTPK;QEAGDS(1)PPPAPGTPK;QEAGDS(1)PPPAPGTPK 284.72 5.4825999999999986e-34 1617350000.0 3081650.0 2709510.0 2451330.0 2377690.0 2441650.0 3165360.0 3077000.0 2958710.0 3829000.0 3220780.0 True False 3065058.738803504 2799694.4024166204 2796455.9566576774 2678705.3102099514 2752579.6547066215 2946546.1136559616 2928153.7547185156 3179503.964224956 2885394.2559713325 3015227.062951514 1.016526674380274 0.9285185970956644 0.9274445666192422 0.888392566889423 0.9128929918837373 0.977221964428668 0.9711221389251644 1.0544824312874919 0.9569409519516942 1.0 21.523835218301752 2.3550259924919033 2.232610065621055 1.0077761066259363 0.9323218232749966 0.33884977572631414 0.03936414157669718 0.3001112686824057 3.0678414773212475 0.016849619205629166 0.012690794796699037 226.47798504397048 -2.3550259924919033 -0.07545428335093973 QEAGISEGQGTAGEEEEKKK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEAGISEGQGTAGEEEEKKK 20 2 O43583;F8VVL1 O43583 DENR Density-regulated protein 0 ; 205.68 4.7248e-22 333890000.0 386120.0 256330.0 244170.0 245160.0 227590.0 385000.0 385800.0 355740.0 730820.0 387110.0 False True 384041.17282196484 264861.7890952429 278547.01363631425 276197.2308631789 256572.23746838415 358385.85619251686 367137.38010087825 382287.12521111744 550719.2034862813 362404.30837845535 1.0597036623000473 0.7308461377855648 0.7686084497246933 0.7621245787584533 0.7079723710140008 0.9889116876012908 1.0130601971692903 1.0548636326141538 1.51962653520987 1.0 18.46724058114349 2.002388496411346 1.329464882709346 1.2260851197563944 0.8043717337651709 0.5139318569033124 0.16038072934267106 0.3339330408414753 1.097121732675042 0.11003955359226425 0.051692070392447866 100.5514867433785 -2.002388496411346 -0.42171338599122354 QEAKPQQAAGMLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEAKPQQAAGMLSPK 15 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 QEAKPQQAAGMLS(1)PK;QEAKPQQAAGMLS(1)PK 214.14 1.2010999999999998e-11 1363050000.0 3243300.0 1772300.0 1667280.0 1446400.0 1586810.0 2681600.0 2240500.0 2444800.0 3627000.0 2507500.0 True False 3225838.4331645053 1831289.9341220278 1902018.5317424503 1629514.0916972656 1788880.8477402632 2496227.3038074095 2132118.4554588334 2627243.390442853 2733174.4493100108 2347469.2032212415 1.374177104746656 0.7801124426293207 0.8102421659600325 0.694157814492823 0.7620465671223832 1.0633695642873777 0.9082625887202695 1.1191811960036366 1.1643068397061385 1.0 21.16267480040815 2.0828726842969276 1.543670133999261 1.1012275608805486 0.8750468767044258 0.14548778423323916 0.1889153957408727 0.663067628519154 2.990917541673176 0.11846546079762206 0.06141883238963712 121.02432923784154 -2.0828726842969276 -0.2261806841761228 QEALKNDLVEALKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEALKNDLVEALKR 14 2 P47756-2;B1AK88 P47756-2 CAPZB F-actin-capping protein subunit beta 0 153.24 3.6258e-06 712200000.0 993480.0 798320.0 740270.0 663720.0 701030.0 990830.0 845670.0 865770.0 1362100.0 1009700.0 False True 988131.2140660047 824891.5986053696 844493.581457813 747746.8839472544 790302.015169653 922336.254262937 804761.7113268793 930378.1536909796 1026428.7062048977 945260.0815523401 1.0453537955852956 0.8726609900321856 0.8933981217856521 0.791048832527951 0.8360683272182515 0.975748656124612 0.8513653829592283 0.9842562611583885 1.0858690917310923 1.0 19.85035180561362 1.5488772531500627 4.213431138612277 1.041903623435567 0.8913472771782348 0.42248361694021597 0.07061841956730892 0.15663505769518318 6.17765474780873 0.04291599158211107 0.018254266036521517 35.38973031590418 -1.5488772531500627 -0.15055634625733216 QEARPEPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEARPEPAR 9 1 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 103.01 0.0031852 316080000.0 573210.0 638890.0 717120.0 557660.0 358070.0 466500.0 558550.0 407530.0 806020.0 502430.0 False True 570123.9010496178 660155.0674328392 818084.26268122 628259.6988218321 403668.09205283277 434251.95302287996 531530.8026317934 437941.9579954089 607387.171114655 470364.4872480359 1.212089595422573 1.403496831351389 1.7392560128584325 1.3356869318463955 0.8582027406332818 0.9232243606730607 1.1300402497255344 0.9310693512549775 1.2913117116224024 1.0 18.843419614532014 3.3932048939772734 5.7598598564798795 1.0176978997781498 1.4609690144072294 0.5898265286968598 0.16536294535182286 0.1345561225453451 7.160926123795689 0.04599155863506662 0.06273173306565684 2472.8905445367914 -3.3932048939772734 0.44327111462907953 QECLDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 QECLDSR 7 0 P25786;P25786-2;F5GX11;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 ; 83.31299999999997 0.052046 1292150000.0 2562000.0 2967500.0 2627700.0 3145100.0 2918700.0 2698300.0 3020300.0 2661400.0 3188400.0 2987000.0 False True 2548206.476664959 3066271.4436083697 2997657.319622156 3543269.337525632 3290379.1445097453 2511772.872114978 2874196.550333547 2860007.1823153645 2402661.5423711143 2796367.102700642 0.9112560629839991 1.0965196381573303 1.0719827581747456 1.2670973471629159 1.1766620846497595 0.8982271568311571 1.027832342741316 1.0227581276983486 0.8592081991133069 1.0 21.4151223372194 2.7410968873318926 24.986008886491295 0.9734845174327109 1.1114529673364482 0.3456542100904355 0.0975420465387611 282.4966669069326 2783016.0997008965 0.03165377679495758 0.032176411046053545 550.9305905326265 -2.7410968873318926 0.13796844990373724 QEDEVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEDEVMR 7 0 O15145 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 0 116.25 0.01279 245010000.0 301440.0 306340.0 329190.0 303240.0 317930.0 338860.0 303080.0 297550.0 298250.0 313550.0 False True 299817.08053313213 316536.34171355946 375537.0906292261 341630.1529081019 358416.50098125264 315435.40579063963 288418.8625219655 319754.691928285 224750.28384524662 293538.97055633954 1.0213876541329208 1.0783452061361167 1.2793432160556975 1.1638323601824179 1.221018457283378 1.0745946447682915 0.9825573141969192 1.0893091684632512 0.7656573960836652 1.0 18.163192524266577 1.9284380045591032 1.171730949453342 0.9235681408885462 1.1530346931079456 0.45038162035050666 0.10039255357538139 0.4516846830999808 1.1433803254234427 0.07884558465754479 0.03482521093702948 84.80823102495448 -1.9284380045591032 0.22946655221939938 QEDEWDKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEDEWDKPR 9 1 P13674;P13674-2;P13674-3 P13674;P13674-2 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 0 ; 121.9 0.00054807 830680000.0 709670.0 643130.0 585340.0 497090.0 549450.0 974180.0 898970.0 657620.0 931100.0 721590.0 False True 705849.21557175 664536.1932697046 667750.7841335139 560021.5430322137 619419.2006547012 906837.229573053 855483.3867011068 706694.9437266977 701642.8811007857 675537.5084157194 1.0448705020497204 0.9837147234476806 0.9884732909939123 0.8290014041493929 0.9169279173074673 1.34239360253997 1.2663743701032961 1.0461224357238863 1.0386438537606728 1.0 19.365676350135864 2.782342815151924 24.973355924222794 1.1441929599178846 0.9494528891602547 0.41232948619902765 0.11096364773241499 466.0123741633727 265812.5120119544 0.03592242961232165 0.038101252134071804 605.8188959083675 -2.782342815151924 -0.1947400707576299 QEDKDDLDVTELTNEDLLDQLVK ddPTM_BT-474_Trastuzumab_2h_R1 5 QEDKDDLDVTELTNEDLLDQLVK 23 1 P42166;P42167;G5E972;H0YJH7;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 0 ;;;; 300.83 6.064899999999998e-62 1345559000.0 810872.0 605686.0 616905.0 466639.0 548954.0 900106.0 774960.0 756082.0 1290294.0 758943.0 False True 806506.3552483475 625845.8923650816 703759.8617656159 525715.4495544248 618860.0379947238 837883.7908416126 737472.22416531 812504.6781466025 972318.3327537935 710506.6079762069 1.1351145030805334 0.8808445767277644 0.990504316026267 0.7399163408935244 0.871012360824444 1.1792765632795792 1.0379526606598515 1.1435568213234848 1.368485981465149 1.0 19.438488541568727 2.737199904991087 24.9707267939954 1.144646512590252 0.9146356362915461 0.41804029814357835 0.13097686178414222 117.71774885633658 2160248.972728776 0.04107400433562895 0.0407027921677138 546.0091303059686 -2.737199904991087 -0.23001087629870598 QEEAEEQGAGS(ph)PGQPAHLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEEAEEQGAGSPGQPAHLAR 20 0 Q96S99 Q96S99 PLEKHF1 Pleckstrin homology domain-containing family F member 1 1 QEEAEEQGAGS(1)PGQPAHLAR;QEEAEEQGAGS(1)PGQPAHLAR 258.87 1.837e-36 1778550000.0 423490.0 437080.0 440230.0 427580.0 441240.0 546120.0 523890.0 382900.0 496280.0 535970.0 True False 421209.9768941623 451627.94357956067 502210.55745224457 481711.5841592347 497429.2985656213 508368.0098282004 498547.4392458506 411473.9423268036 373978.4438112964 501763.9357329972 0.8394584522676817 0.9000805187798205 1.0008901032685718 0.9600362837068607 0.9913612022333895 1.0131617153503782 0.9935896220152853 0.8200548365950329 0.745327468115008 1.0 18.936649255249797 1.7164130396908577 7.7060526174817054 0.8383881287368549 0.9599730948832074 0.25702056016685226 0.077436307670631 0.13544566564897925 20.305558086488862 0.03755346376228037 0.01978477034789421 52.04907786703907 -1.7164130396908577 0.1215849661463525 QEEDSYEIFICHANVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEEDSYEIFICHANVIR 17 0 Q96HS1;Q96HS1-2;F5GXG4 Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial 0 149.57 3.2004e-07 224360000.0 111170.0 132850.0 130340.0 117740.0 97303.0 174430.0 132140.0 102850.0 161730.0 135020.0 False True 110571.47307214815 137271.831940479 148690.7390644107 132645.8719278457 109693.96028993432 162372.0646640537 125747.88337617947 110525.18926171775 121873.8085709699 126402.90800356213 0.8747541873722727 1.085986344053181 1.1763237208136104 1.0493894011054528 0.8678119991261836 1.2845595661412943 0.9948179623576049 0.8743880264099863 0.9641693414801453 1.0 16.94767012872761 2.001258831686363 24.999994095894476 0.9328224035343188 1.06147351722461 0.14302610577264618 0.12040921359077882 67.1322953668725 1333204.146609452 0.04458871196015472 0.03267304676214852 100.29027719829074 -2.001258831686363 0.12865111369029114 QEEEDRDS(ph)PGPQVPDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEEEDRDSPGPQVPDPK 17 1 M0R353;Q6NSJ2-2;Q6NSJ2 M0R353 PHLDB3 Pleckstrin homology-like domain family B member 3 1 QEEEDRDS(1)PGPQVPDPK;QEEEDRDS(1)PGPQVPDPK 157.63 1.1266e-08 840060000.0 742200.0 632740.0 572540.0 563640.0 586420.0 711890.0 671810.0 663770.0 912200.0 715900.0 True False 738204.0776661726 653800.3684005922 653148.6553931078 634996.766208689 661097.1110163443 662678.719908807 639311.9837365769 713303.8879557636 687400.5328537602 670210.6490871743 1.1014508329158978 0.9755147419562299 0.9745423416991286 0.9474584849905823 0.9864019796115704 0.9887618479523925 0.953897083860602 1.0642980515563012 1.025648479011783 1.0 19.35425508437997 1.7364235006510746 24.999995359933653 1.0343284723590462 0.9867983859139473 0.15295869727938605 0.04267178736121488 0.43378373165204115 4959.730352680337 0.019343486744328894 0.010726882411716017 54.503388155283425 -1.7364235006510746 -0.04753008644509893 QEEKHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEEKHLK 7 1 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 0 ; 55.383 0.076886 901020000.0 1824910.0 1100480.0 781900.0 655740.0 692230.0 856360.0 736220.0 732150.0 1408360.0 874560.0 False True 1815084.8873265628 1137108.811545793 891984.7236033673 738756.6167654627 780381.387331338 797161.848854607 700606.2259664829 786786.7507823679 1061288.549057138 818744.8320515149 2.2169115654489517 1.3888439560547319 1.0894538672913958 0.9023038532217332 0.953143588553652 0.9736389381013523 0.8557076619476008 0.9609669826079144 1.2962384707795778 1.0 19.643054369657094 4.783590030352754 1.5993516033007447 0.9780648378290403 2.7732611568268535 0.9150437637418047 0.1126821696334083 0.29069585067033465 0.6512226300381072 0.029827949185124956 0.8399651400487232 60756.11987943912 -4.783590030352754 1.7951963189978133 up QEES(ph)ESPVERPLKENPPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QEESESPVERPLKENPPNK 19 2 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 QEES(0.5)ES(0.5)PVERPLKENPPNK 121.35 1.8428e-05 422870000.0 270030.0 192190.0 198820.0 168880.0 189430.0 253640.0 261300.0 247960.0 308810.0 261140.0 True False 268576.18848315335 198586.92796869169 226812.12782558036 190260.1906843437 213552.78766042442 236106.46380433708 248659.92073706482 266464.0343153676 232707.91334199713 244473.8216267981 1.0985887433508066 0.8123034468363033 0.9277562984711745 0.778243614871721 0.8735200613275632 0.9657740130751741 1.0171228930869212 1.0899491509652868 0.9518725227653935 1.0 17.89932046341309 2.478421682022644 2.9714475370519193 1.028990065118798 0.8889821640946172 0.28069221030638647 0.08636839120777179 0.2827311133494208 5.119886099558995 0.030757978444534102 0.02640695420985235 300.8996496149632 -2.478421682022644 -0.14000790102418081 QEESES(ph)PVERPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEESESPVERPLK 13 1 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 QEES(0.008)ES(0.992)PVERPLK;QEES(0.034)ES(0.966)PVERPLK 192.16 1.7862e-06 1065330000.0 926290.0 774470.0 670610.0 608610.0 638320.0 789130.0 667260.0 732690.0 956310.0 735330.0 True False 921302.9575604937 800247.7657729994 765026.0589533864 685659.9635978107 719606.2683809437 734579.3005122087 634982.0846192647 787367.0483244325 720640.2143974785 688400.6098523149 1.3383238544168985 1.162473934973241 1.111309385849484 0.9960188207051528 1.0453306665944462 1.0670811297941771 0.9224019786320202 1.143762857056953 1.0468326205464578 1.0 19.39288884989529 4.731885512095466 1.2910875393773993 1.0395094692215094 1.4673347474484348 0.7414760691839817 0.055518166902939314 0.6920434482667126 1.008914238315955 0.015474312177767702 0.3911989005295226 53936.84164719343 -4.731885512095466 0.4278252782269254 QEESES(ph)PVERPLKENPPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QEESESPVERPLKENPPNK 19 2 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 QEES(0.049)ES(0.951)PVERPLKENPPNK 178.39 1.9869e-14 545340000.0 423770.0 319160.0 341550.0 280220.0 322400.0 515750.0 479650.0 429930.0 612740.0 515660.0 True False 421488.4694052726 329783.0476637061 389637.2711941802 315695.82326839626 363455.7289854867 480097.4164449099 456447.49705906236 462013.5597403047 461738.4372953449 482750.1373212628 0.8730986007462874 0.6831340318071014 0.8071199593152732 0.6539528399104433 0.7528858117001684 0.9945049816224338 0.9455150020088002 0.9570449058885337 0.9564749993806114 1.0 18.880917143996324 2.74425433018651 24.620637049689844 0.9650835821586358 0.7474877952169316 0.770434764740529 0.05904221989440479 166.17133720002698 718554.9749790385 0.017098730213183082 0.01768187566479028 554.9506062686825 -2.74425433018651 -0.21759578694170412 QEFAQHANAFHQWIQETR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEFAQHANAFHQWIQETR 18 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 216.49 5.1671e-19 547940000.0 209340.0 227040.0 183810.0 184210.0 172810.0 235300.0 198300.0 131320.0 189060.0 220450.0 False True 208212.93669986058 234596.8891514215 209688.85029483892 207530.96711252304 194816.3291748821 219034.26483662103 188707.4714204362 141119.76522944844 142468.69627420726 206380.69226325967 1.0088779837711936 1.136719169699117 1.0160293969135414 1.005573558440225 0.9439658673417664 1.0613118040965792 0.914365919364785 0.6837837574914022 0.6903198875429387 1.0 17.654948481636996 1.976847839117759 4.426434966790961 0.7621791384146194 1.0266972706899506 0.553872894197913 0.09448938850657364 0.1299585872367917 6.018869604406785 0.04034535759787783 0.025076857348904687 94.8086230407732 -1.976847839117759 0.2645181322753313 QEFEFWYPVDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 QEFEFWYPVDLR 12 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;A0A6I8PLB8;A0A6I8PIP7;A0A6I8PTV8;A0A6I8PRP1 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ;;;;; 199.82 3.8887e-07 967737000.0 859543.0 911248.0 796990.0 819446.0 829913.0 875835.0 805441.0 821053.0 945241.0 879553.0 False True 854915.3159922058 941578.3388189512 909199.2644387346 923187.7795803082 935597.5012702625 815290.5879438259 766478.7417465827 882324.1440826555 712299.021130478 823419.1745167912 1.0382504348333854 1.1434981938227264 1.104175482641975 1.1211638107918296 1.1362347759502942 0.9901282520197134 0.9308487893743511 1.0715370389576264 0.8650503208751216 1.0 19.65126751874598 2.7102728102290965 8.769703566477201 0.9802761818944746 1.111040272633122 0.5954747096479067 0.05627463313095611 0.24445185877915498 71.57636621526314 0.017425905402801672 0.01660873508924415 513.183648702168 -2.7102728102290965 0.13076409073864748 QEFEVMEDHAGTYGLGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 QEFEVMEDHAGTYGLGDR 18 0 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L2Z2;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau 0 ;; 115.72 0.0001811 301579000.0 99681.0 101954.0 101291.0 105096.0 102916.0 124061.0 113660.0 98530.0 122167.0 108678.0 False True 99144.32857160027 105347.47725750552 115551.89236284516 118401.14282426436 116021.74256907683 115484.9550781813 108161.83157663512 105882.8089252021 92060.57980393054 101742.076996083 0.9744673147906865 1.035436668563011 1.1357335703623765 1.1637382125472309 1.1403516224024361 1.1350756588410065 1.0630983244110426 1.040698323165533 0.9048427408010828 1.0 16.634556925699698 1.5257834352715776 2.5826489890428306 0.9541470196349683 1.0989620786113632 0.46283403904656184 0.05888959154568686 0.22984960991649467 3.229110119556541 0.04764380673818087 0.0168886883943632 33.55702374909534 -1.5257834352715776 0.1448150589763949 QEGSS(ph)PEPVEGLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEGSSPEPVEGLAR 14 0 Q9BXH1 Q9BXH1 BBC3 Bcl-2-binding component 3 1 QEGS(0.002)S(0.998)PEPVEGLAR 143.46 9.5673e-06 71286000.0 130230.0 188490.0 162840.0 163390.0 177450.0 161950.0 150630.0 145190.0 168650.0 151830.0 True False 129528.85614991334 194763.77570538907 185766.45656934686 184075.15724724595 200047.20567144736 150754.77768929378 143343.45143752027 156024.81505988116 127088.46729421912 142140.07941179737 0.9112760924710914 1.3702241937063673 1.306925234163958 1.2950264134435825 1.4073947791451973 1.0606071019035987 1.0084660992923509 1.0976834662365567 0.8941071921454901 1.0 17.116953884863765 2.593512363471255 6.297668501819787 1.0198513687835997 1.2684907758925539 0.45494451449770923 0.13491327642897075 0.22004333864225456 10.638597221575637 0.042848244594727074 0.04024567415306838 392.20431142433887 -2.593512363471255 0.24863940710895416 QEHADGLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEHADGLLK 9 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 ; 110.53 0.0022714 548280000.0 422960.0 430750.0 400160.0 428520.0 355520.0 507260.0 472360.0 371830.0 576890.0 479730.0 False True 420682.83035527414 445087.25335612684 456499.04974692804 482770.58806285396 400793.36466786684 472194.3101615992 449510.1422095671 399577.84271448245 434723.1894299564 449113.2206824838 0.9366966078531241 0.9910357407866127 1.01644536104553 1.0749418316593387 0.8924105241409084 1.0513925852461898 1.000883789451756 0.8897040307726276 0.9679590121380529 1.0 18.77671966623214 1.781007184954401 24.999999997666784 0.9408011105461813 0.9968325335264485 0.09681114299874549 0.05557499360512794 117.48319369948072 69219.46884907814 0.024698864214561557 0.01374088708949032 60.395862116637154 -1.781007184954401 0.0560314229802672 QEIQHLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEIQHLFR 8 0 P04844-2;P04844;H0Y5M1 P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 0 148.62 0.00051832 254330000.0 118400.0 190000.0 224620.0 138800.0 182320.0 207470.0 158850.0 122250.0 185730.0 160070.0 False True 117762.5475554768 196324.0351425747 256244.54356796035 156372.0657685154 205537.37130469584 193128.08723184754 151165.8186340708 131372.91577292175 139959.33015449354 149854.19555717846 0.7858475174326585 1.3101003573014087 1.7099590880002256 1.0434947462572042 1.371582360710554 1.2887733073723482 1.0087526616923574 0.8766715892368527 0.9339700475792856 1.0 17.193199950846196 2.151121017283256 4.092323182005398 0.9277550890007463 1.271584700615311 0.29698913337988797 0.22379161360668157 0.2586399757794714 8.148445921395691 0.08825554042111115 0.06371478706657696 141.61883495355636 -2.151121017283256 0.3438296116145646 QEITDKDHTVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEITDKDHTVSR 12 1 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 0 ; 186.13 7.3022e-06 302170000.0 299800.0 247810.0 283400.0 228860.0 248000.0 301420.0 288270.0 263310.0 322720.0 297210.0 False True 298185.9101109114 256058.20604569162 323300.25664304127 257833.65253445558 279581.3299888361 280583.5448663593 274325.27880165935 282959.5292610877 243189.98022644772 278241.803345717 1.0716790450801303 0.9202722343182123 1.1619399125347778 0.9266531823548304 1.004814253742651 1.008416210262024 0.9859240254449064 1.0169554892853712 0.8740238788787708 1.0 18.08597966264497 2.6350791524257717 0.5694622444816934 0.964376367294838 1.0301285149258508 0.10859283095831329 0.07280463446553267 2.3504094944058216 1.5954812303878503 0.058684397570735174 0.06206057267498689 431.59773058885247 -2.6350791524257717 0.06575214763101278 QEKPAEKPAETPVAT(ph)SPTATDSTSGDSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 QEKPAEKPAETPVAT(0.414)S(0.292)PT(0.292)AT(0.001)DSTSGDSSR;QEKPAEKPAETPVAT(0.539)S(0.406)PT(0.047)AT(0.007)DSTSGDSSR 175.67 7.2332e-13 10638740000.0 1858550.0 1397090.0 1341980.0 1178095.0 1246730.0 1692080.0 1616810.0 1374770.0 1913380.0 1499410.0 True False 1848543.7733043164 1443591.2960912616 1530919.1193007354 1327241.706207198 1405493.6755523467 1575110.49232788 1538598.7234860084 1477362.3183406089 1441853.136978434 1403716.3700905154 1.3168926520284987 1.0284066830382372 1.0906185550874623 0.9455198603415974 1.0012661428616927 1.1221002517953913 1.0960894638471699 1.0524649778397501 1.0271684278252446 1.0 20.420820028612688 4.740680851906221 24.830218205617275 1.0448736592258956 1.316892755305416 0.7321207944213295 0.05010818902076975 93.88904230673627 1099458.5654832998 0.01238106559100374 0.08187042269705938 55040.30754425402 -4.740680851906221 0.27201909607952035 QEKPAEKPAETPVATS(ph)PTATDSTSGDSSR ddPTM_BT-474_Trastuzumab_2h_R1 11 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 QEKPAEKPAET(0.001)PVAT(0.366)S(0.608)PT(0.021)AT(0.004)DSTSGDSSR;QEKPAEKPAETPVAT(0.037)S(0.963)PTATDSTSGDSSR;QEKPAEKPAETPVAT(0.181)S(0.817)PT(0.002)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.1)S(0.817)PT(0.074)AT(0.006)DS(0.001)T(0.001)SGDSSR;QEKPAEKPAETPVAT(0.007)S(0.634)PT(0.344)AT(0.015)DSTSGDSSR;QEKPAEKPAETPVAT(0.053)S(0.462)PT(0.462)AT(0.018)DS(0.003)T(0.001)SGDSSR;QEKPAEKPAETPVAT(0.009)S(0.933)PT(0.056)AT(0.002)DSTSGDSSR;QEKPAEKPAETPVAT(0.016)S(0.981)PT(0.002)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.01)S(0.958)PT(0.031)AT(0.001)DSTSGDSSR;QEKPAEKPAETPVAT(0.172)S(0.828)PTATDSTSGDSSR;QEKPAEKPAETPVAT(0.143)S(0.855)PT(0.002)ATDSTSGDSSR 207.42 1.3294e-25 180777140000.0 15777160.0 12146000.0 12059990.0 10145220.0 10268100.0 14639910.0 13892620.0 11933950.0 16403580.0 12929670.0 True False 15692217.523567263 12550272.267587941 13757931.764687765 11429603.811787168 11575681.671203105 13627887.480341267 13220580.895637799 12824521.948370215 12361137.505710691 12104487.390952595 1.2963967012181192 1.0368280673305128 1.1365976369202568 0.9442451747547885 0.9563132495685244 1.1258541597166127 1.0922049376101148 1.0594849277100165 1.0212028900083723 1.0 23.529038648613266 5.466061485853805 1.5715314933120907 1.042384940946371 2.6771392357531187 0.5933625621445591 0.06262251236321775 6.948423989986724 2.9493605431102012 0.01686972449981209 30.554582902862492 292456.63981475204 -5.466061485853805 1.6347542948067477 QEKPAEKPAETPVATSPT(ph)ATDSTSGDSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 QEKPAEKPAETPVAT(0.032)S(0.449)PT(0.498)AT(0.018)DS(0.002)T(0.001)SGDSSR 175.75 6.7345e-13 2333800000.0 778020.0 613190.0 613990.0 498740.0 502350.0 746710.0 698480.0 627520.0 761450.0 612560.0 True False 773831.2267661477 633599.6584688178 700434.4551032489 561880.432863036 566321.294838274 695091.6952662695 664691.8539472831 674348.7288819943 573800.8504072522 573465.8963609989 1.349393628595166 1.1048602235798248 1.2214055963012715 0.9797974673446497 0.9875413663339672 1.212088983280545 1.159078261087835 1.175917754065517 1.0005840871242369 1.0 19.129348167105437 6.516216883872063 1.2521565593376125 1.0999609291963746 21.106928341207905 0.41046478178405266 0.0915344973791225 133.09442532122577 3.3300833358013504 0.02582217573828531 7362.953811058257 3282591.82712384 -6.516216883872063 20.00696741201153 QEKPAEKPAETPVATSPTATDSTSGDSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 ;;;;; 249.88 1.8185999999999998e-46 11620820000.0 3142478.0 2256312.0 2386260.0 2106756.0 2170036.0 3328918.0 3268340.0 3269551.0 4268460.0 3481569.0 False True 3125559.247610127 2331411.980950593 2722224.666256262 2373471.0935894386 2446377.2217889265 3098797.734090074 3110237.9079287304 3513541.498063571 3216555.227433633 3259372.285698815 0.9589451506733917 0.7152947796666727 0.8351990590950897 0.7281988326413479 0.7505669826435366 0.9507345164854915 0.9542444481029544 1.0779810313415186 0.9868634035906083 1.0 21.636162715526705 2.5220492332472118 2.6034492998155905 1.0172208732876533 0.7916243019267708 0.6527166471203533 0.07174038276314054 0.15802832242274548 2.1418500254695827 0.025605127363070128 0.02235716443166521 332.6972669631227 -2.5220492332472118 -0.22559657136088251 QEKPVNGEDKGDSGVDTQNS(ph)EGNADEEDPLGPNCYYDK ddPTM_BT-474_Trastuzumab_2h_R1 1 QEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNCYYDK 38 2 Q8ND56-2;Q8ND56;Q8ND56-3;A0A140TA76;K7EMZ9;A0A0G2JQ95;A0A096LP11 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 QEKPVNGEDKGDS(0.018)GVDT(0.121)QNS(0.861)EGNADEEDPLGPNCYYDK 75.46 0.0013834 410670000.0 223270.0 128250.0 107000.0 91341.0 118780.0 198700.0 181910.0 169090.0 291980.0 191080.0 True False 222067.93912762913 132518.7237212378 122064.66993932764 102904.76123459617 133905.92893578217 184964.33668948838 173110.31833631627 181708.35442162218 220025.44133155118 178885.11080818175 1.2413997907615255 0.7408035421312255 0.6823634979336956 0.575256156142256 0.7485582692198979 1.0339839679995804 0.9677178696104127 1.015782440476378 1.2299818600748955 1.0 17.448673786605152 2.73368904915646 22.939886358204106 1.0407462229908766 0.7757537170004158 0.33355252231778065 0.176403181531643 153.54893831070234 723047.7771993916 0.05747595614046371 0.05589258225178494 541.6129616562505 -2.73368904915646 -0.26499250599046076 QEKRPLFLAPDFDRWLDES(ph)DAEMELR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEKRPLFLAPDFDRWLDESDAEMELR 26 3 H3BS72;Q9P035;H3BPZ1 H3BS72 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 QEKRPLFLAPDFDRWLDES(1)DAEMELR;QEKRPLFLAPDFDRWLDES(1)DAEMELR 185.19 1.0509e-17 82511000.0 49546.0 31761.0 75991.0 65707.0 82045.0 135912.0 95781.0 80314.0 42268.0 73966.0 True False 49279.249841078105 32818.14568507008 86689.87227438718 74025.49946290955 92492.94443118578 126516.72334243463 91147.70711104784 86307.43850622844 31851.61776218237 69245.42655452141 0.7116607159936744 0.47393954110789144 1.2519219909221098 1.0690308825612398 1.335726401488192 1.8270769585457 1.3162993087966806 1.246399116890023 0.45998153736699887 1.0 16.079431168328625 4.233322038657171 24.980552959751503 1.228053047197661 0.5928000544049893 0.3404770744341147 0.3278113537699242 118.88743267115095 566934.5541496611 0.08310083796540128 0.18835389793167653 17112.837983058063 -4.233322038657171 -0.6352529927926717 QEKS(ph)PQDPGDPVQYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEKSPQDPGDPVQYNR 16 1 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C2D8;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36 MLPH Melanophilin 1 QEKS(1)PQDPGDPVQYNR 74.77600000000002 0.009324 0.0 225430.0 200350.0 196750.0 188120.0 185710.0 198200.0 223260.0 215300.0 235680.0 204120.0 True False 224216.30992762762 207018.52863586738 224450.68981834268 211935.97271162178 209359.06771059165 184498.90051261475 212460.0608639763 231366.77927124745 177599.82195020182 191092.88684407593 1.1733367663788505 1.0833397938290927 1.174563289744455 1.1090730597657095 1.0955879685957133 0.965493292605697 1.111815643024615 1.210755581185151 0.9293900201273116 1.0 17.543914551518426 1.0866279493588913 0.015405276579881484 5.788561837582703e-07 2.134540753803486 0.23261669578774746 0.07774904848364199 1007.9622499494012 11.457448492847853 805.5651718139671 779.1871069007246 12.207534191678096 -1.0866279493588913 2.1345401749473023 QELEEILHDLESR ddPTM_BT-474_Trastuzumab_2h_R1 3 QELEEILHDLESR 13 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;; 97.836 0.0035957000000000007 14114000.0 28884.6 31820.4 25470.2 26420.6 30268.3 31942.0 30250.4 29190.9 39355.6 36017.1 False True 28729.088522980743 32879.52277816202 29056.18276905288 29765.445251034853 34122.7885907302 29733.92472338017 28787.07258424992 31369.273186386734 29656.939718021753 33718.45784220934 0.8520285434589828 0.9751194118078221 0.861729290972491 0.8827641344193969 1.0119913772573166 0.8818293191973547 0.8537481968767199 0.9303294158108899 0.879546148189989 1.0 15.041250933792831 -0.9333752066320136 4.179822934672035 1.0000031161233995 0.9057538024019142 0.24340236859766784 0.05100868732424959 132938060278.82094 277816130158.8651 6435177.979326728 0.011641920620536626 0.11658019928244455 0.9333752066320136 -0.09424931372148537 QELEQS(ph)LASWTQNLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QELEQSLASWTQNLK 15 0 Q8WXH0-13 Q8WXH0-13 SYNE2 Nesprin-2 1 QELEQS(0.333)LAS(0.333)WT(0.333)QNLK 68.044 0.089921 652930000.0 580310.0 1059200.0 1070200.0 1176200.0 1094100.0 1003300.0 962280.0 887840.0 635280.0 1152800.0 True False 577185.6754385022 1094454.8317000777 1220874.8576548437 1325106.7994014958 1233427.1497612332 933944.2325141612 915730.8401334197 954095.1291601692 478723.7563158698 1079227.3170382662 0.5348138119988274 1.0141096453188385 1.1312490319512132 1.2278291871243576 1.1428798458754168 0.8653823135956132 0.8485059872710307 0.8840539097717629 0.44358009546092286 1.0 20.041567340195996 2.543860951310013 4.793926777565995 0.8027596497394607 1.028978433209835 0.1760209602105931 0.2200929904924625 0.37999634629207096 16.99924727040577 0.0749085867801738 0.06908576777294907 349.8331425145232 -2.543860951310013 0.22621878347037438 QELMQVHGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QELMQVHGEK 10 0 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 ; 130.56 0.00027332 392300000.0 673060.0 573520.0 533200.0 555340.0 508950.0 681770.0 627650.0 557740.0 754920.0 663320.0 False True 669436.3197439961 592609.2664998389 608269.9253425174 625645.9870597073 573761.7657170085 634640.8446139527 597288.1716441584 599361.3909463342 568880.081409735 620986.3497031761 1.078020990419481 0.9543032093750514 0.9795222159605651 1.0075036067358945 0.9239522994205261 1.0219883978404731 0.9618378438264463 0.9651764346073335 0.9160911212970346 1.0 19.24420203043172 4.743677220649357 24.83246819402616 0.9699938157066738 1.0780210398749865 0.5007331759366686 0.03234629371004649 392.64522972533155 1905559.9916135762 0.0072079284485804624 0.06090231830989439 55421.36533427648 -4.743677220649357 0.10802722416831279 QELS(ph)FAARSFYYK ddPTM_BT-474_Trastuzumab_2h_R1 1 QELSFAARSFYYK 13 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 QELS(0.286)FAARS(0.286)FY(0.234)Y(0.193)K 53.448 0.087469 1148700000.0 905830.0 764530.0 679920.0 656350.0 674600.0 781710.0 796100.0 626650.0 1038600.0 834090.0 True False 900953.1119271738 789976.9188818564 775646.8260294158 739443.8427029192 760506.3113325357 727672.2276474083 757589.6016026685 673413.8050642234 782650.9465269848 780857.6620996237 1.1537994126927424 1.0116785135433162 0.9933267785883069 0.9469636767277813 0.9739371824663078 0.9318884387851086 0.9702019181903262 0.8624027626923735 1.0022965573809435 1.0 19.57470006646873 7.999993057407629 0.7306124686625395 0.9420055699548296 33.90047404281964 0.6866225268168445 0.03936016661038745 173.02967778473197 0.8032888441295793 0.01368935548145103 9361.854338878711 99998401.42180733 -7.999993057407629 32.95846847286481 QELSFAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QELSFAAR 8 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 111.82 0.0073512 423860000.0 636190.0 887160.0 894250.0 909840.0 836100.0 785340.0 825390.0 645270.0 741780.0 771430.0 False True 632764.8237273544 916688.5843004548 1020152.6270396599 1025025.6507120024 942572.3790470392 731051.2942915079 785462.732404002 693423.3240146682 558978.2583427571 722196.6769455484 0.8761669001352427 1.2693060125636255 1.4125689851610554 1.4193164873691138 1.305146380669523 1.0122606730668011 1.087602252236926 0.9601585636580691 0.7739972727469397 1.0 19.462032256444207 2.363735886512155 1.5007176832748959 0.9242320096454729 1.2713812872662453 0.44571355793092815 0.1601706416482887 0.37565439678394424 1.7031700570540222 0.08715424988120327 0.05903801825041905 231.06591498136032 -2.363735886512155 0.3471492776207724 QELSHALYQHDAACR ddPTM_BT-474_Trastuzumab_2h_R1 2 QELSHALYQHDAACR 15 0 Q9UMS4;F5GY56;F5H2I0 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 0 ; 224.67 6.3712e-13 3915900000.0 1048980.0 1370570.0 1100920.0 1239730.0 1170530.0 1256110.0 1287680.0 788100.0 1295000.0 1134630.0 False True 1043332.4082326338 1416188.5939229399 1255919.9666318174 1396679.6908876197 1319590.0572251307 1169278.0722648876 1225389.9989847043 846912.0238907116 975864.6021109612 1062216.941994386 0.9822215848616619 1.3332385673155875 1.1823573104320295 1.314872353914123 1.2422980702487278 1.1007902680120003 1.1536155662175276 0.7973060778908078 0.9187055520680245 1.0 20.01864701454008 1.8501046713700624 5.166654490228525 0.8913529529858301 1.200099493041288 0.5968628290077712 0.1060116963948883 0.13628850779029325 5.059711346220079 0.04729632278178789 0.02755157729340251 70.81164303139906 -1.8501046713700624 0.308746540055458 QELVDAFVEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 QELVDAFVEHR 11 0 K7EIG1;A0A494C0R8;O75153;I3L2B0 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ;;; 196.11 6.1606e-08 978240000.0 984500.0 1059150.0 1021950.0 1078990.0 990490.0 1049030.0 1084530.0 944610.0 1112040.0 1120260.0 False True 979199.5613882322 1094403.1674803037 1165831.6770513617 1215590.0233686625 1116623.0304058169 976513.025251001 1032067.1405930686 1015101.5948323882 837992.6425725673 1048764.0476971604 0.9336700314416045 1.0435170521752306 1.1116243731001785 1.1590691214461564 1.0647037652155018 0.9311084103189791 0.9840794436644217 0.9679027394782582 0.7990287657291479 1.0 20.00025870433473 2.743292038230958 21.523655474321576 0.9412352108967562 1.0695535811739787 0.41607395109101275 0.07434652392950879 60.26252774283103 274138.2100197349 0.0237849838465252 0.02440218119808957 553.7223306900836 -2.743292038230958 0.12831837027722248 QEMQEVQSSR ddPTM_BT-474_Trastuzumab_2h_R1 13 QEMQEVQSSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;; 295.34 7.0656e-32 15059460000.0 3723624.0 4019054.0 3794290.0 3854109.0 3738066.0 3878445.0 3764063.0 3442035.0 4076438.0 3886595.0 False True 3703576.4221175173 4152825.7828205545 4328493.051440105 4342038.804229306 4214086.547846974 3610337.226027489 3581980.892572973 3698897.129999575 3071854.4763706597 3638549.1796186166 1.0178717503292662 1.1413411164215301 1.1896205981456065 1.193343442642275 1.1581777076017654 0.9922463728814889 0.9844530651495624 1.0165857179336748 0.8442525646149556 1.0 21.794931880020293 2.6952789102832857 4.928112059836801 0.972108744095681 1.1461528260861724 0.6491088902326996 0.06340082970766538 0.13390655808858754 7.835128776663193 0.021086859000794596 0.020219285147266196 495.7684783744427 -2.6952789102832857 0.17404408199049137 QENKRPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 QENKRPSPR 9 2 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 QENKRPS(1)PR;QENKRPS(1)PR;QENKRPS(1)PR;QENKRPS(1)PR 74.392 0.032462 494152000.0 326251.0 300992.0 273914.0 292699.0 284589.0 364317.0 399968.0 327935.0 506470.0 398420.0 True False 324494.5008658941 311010.3367664938 312478.71029683173 329754.66338889574 320829.7222588425 339132.6232999714 380620.01981386304 352407.17492018844 381657.25485029997 372992.4944954769 0.8699759530143282 0.8338246515849538 0.8377613890582483 0.8840785491808187 0.86015061159021 0.9092210387737009 1.0204495410254928 0.9448103651438539 1.0232303879640885 1.0 18.50878707472135 2.4579965168867606 3.207773259818919 0.988430445790161 0.8568178164228893 0.8696288392712462 0.02538172774021892 0.08599580089539456 1.8447043599367787 0.009213564190997944 0.007842877138121632 287.0757557984157 -2.4579965168867606 -0.1316126293672717 QEPCAQHNGSEPAS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEPCAQHNGSEPASPKR 17 1 M0QZ09;Q8N6T7;Q8N6T7-2 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 QEPCAQHNGS(0.014)EPAS(0.986)PKR 150.36 1.3649e-07 178540000.0 143960.0 118990.0 125080.0 109850.0 133790.0 156610.0 153130.0 132050.0 161830.0 148790.0 True False 143184.93535545954 122950.510219026 142690.1767851502 123756.99873682561 150827.36346454182 145783.9193202857 145722.51688659287 141904.2415363133 121949.16491090132 139294.0948144723 1.0279325591380561 0.8826685035197325 1.0243806600358842 0.888458329132037 1.0827979726307193 1.0465908085655553 1.046149997102768 1.018738387476637 0.8754797902475842 1.0 17.08777457255934 5.089169513728231 20.875577753862935 0.9906859208459964 3.7355374220954127 0.025603894732510013 0.07217061327329516 3737.420719252446 889808.3480652911 0.016492177217953773 8248.582459657844 122791.84184856589 -5.089169513728231 2.7448515012494163 QEPES(ph)EEEEEEKQEK ddPTM_BT-474_Trastuzumab_2h_R1 7 QEPESEEEEEEKQEK 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK 267.55 1.1277e-25 15562280000.0 6989160.0 3888755.0 3514232.0 3182128.0 3491500.0 5729320.0 5329350.0 5476230.0 8664260.0 5300080.0 True False 6951531.139128672 4018189.859372962 4009005.3193478747 3584985.07852907 3936121.829258147 5333265.593768596 5071548.980405959 5884894.09033249 6529069.218135845 4961824.3567732265 1.401003066470775 0.8098210598462359 0.8079700189055081 0.7225134992203669 0.7932811696337203 1.074859811691707 1.0221137661761346 1.1860343428519817 1.315860608653594 1.0 22.242439235611105 2.247432602934624 1.7583283332354556 1.1742829339925263 0.8917467025995885 0.2224735098487466 0.19564014905097057 0.4819348769890241 2.9818303777688704 0.10135330966352943 0.06414764681381369 176.7797856355121 -2.247432602934624 -0.2825362313929377 QEPGGSHGS(ph)ETEDTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEPGGSHGSETEDTGR 16 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 QEPGGS(0.001)HGS(0.583)ET(0.415)EDT(0.001)GR 167.99 6.4328e-09 111090000.0 65317.0 75542.0 65848.0 57087.0 62217.0 74934.0 65037.0 58727.0 73465.0 62602.0 True False 64965.34052940095 78056.36980389668 75118.82603892378 64314.208346737985 70139.96616094925 69753.98895566247 61890.91184453305 63109.50694966357 55360.535130565164 58606.68676373136 1.1084970694778233 1.3318679849378845 1.281744971213949 1.097386866553574 1.196791186024787 1.190205295803031 1.056038402137316 1.0768311678168228 0.9446112412692288 1.0 15.8387776587109 2.046817233512001 0.8079063758114585 0.9736889935049697 1.225587898211564 0.6170025620556718 0.07135240672884953 0.40731276181607207 0.4968271025624939 0.059697773876977445 0.03139479378529113 111.38256976745512 -2.046817233512001 0.25189890470659426 QEPIES(ph)DEEEAEPPREVEPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEPIESDEEEAEPPREVEPGQR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 QEPIES(1)DEEEAEPPREVEPGQR 109.44 0.00023592 1311300000.0 56906.0 69827.0 61466.0 63529.0 67653.0 69341.0 61662.0 52931.0 74492.0 74064.0 True False 56599.62441885096 72151.14948368717 70119.8785279505 71571.76488622488 76268.20853925294 64547.61988115666 58679.17348828502 56880.97999817192 56134.44474166012 69337.17211061947 0.8162955409913859 1.0405839650999658 1.0112884098601873 1.0322279191317518 1.099961337009473 0.9309237443110365 0.84628737662778 0.8203533294871741 0.8095865901785564 1.0 16.081341377538415 2.4392491021650637 4.332691229107391 0.8516994388920378 1.005967575017305 0.3375975487680217 0.08472864388112036 0.19699179198641859 8.315191769555142 0.02917019087907857 0.024689501126030855 274.9470739400849 -2.4392491021650637 0.15426813612526713 QEPLGS(ph)DSEGVNCLAYDEAIMAQQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;Q96FW1;F5H6Q1;F5GYJ8;F5H3F0 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 QEPLGS(0.5)DS(0.5)EGVNCLAYDEAIMAQQDR;QEPLGS(0.5)DS(0.5)EGVNCLAYDEAIMAQQDR 210.51 9.172899999999999e-26 208040000.0 87248.0 101925.0 90337.0 106303.0 79907.0 104586.0 91657.0 83912.0 95902.0 95071.0 True False 86778.26646216404 105317.51201003652 103055.6643767199 119760.94890050788 90082.68280410458 97356.21598896242 87223.20074625766 90173.93953650234 72268.23712096177 89003.48738562196 0.9749984973755378 1.1832964651568247 1.1578834425915763 1.3455759141394568 1.012125316099209 1.09384720586454 0.9799975631106349 1.0131506324668964 0.8119708479269804 1.0 16.441574245239416 2.310900326831209 1.1897343148196655 0.9346216028844476 1.1555694596209771 0.4170519639565705 0.10541964004368647 0.459426581710495 1.273868982354843 0.06545427401194889 0.03981222779695204 204.59750193908667 -2.310900326831209 0.2209478567365295 QEPQGQEIQSENLIMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEPQGQEIQSENLIMEK 17 0 Q4VCS5 Q4VCS5 AMOT Angiomotin 0 ; 62.165 0.044855 6585500000.0 2614290.0 4251930.0 3976770.0 4398080.0 4109400.0 3744640.0 3821040.0 3430040.0 3106280.0 4075460.0 False True 2600214.9531149254 4393452.919704039 4536664.649295505 4954876.477054694 4632707.731677911 3485781.8507343987 3636201.6974096973 3686007.0021902043 2340778.916019488 3815360.653623151 0.6815122315227798 1.15151706969875 1.189052637785995 1.2986652971716928 1.2142253779543983 0.913617916414854 0.9530427206027507 0.9660966123058092 0.6135144560440525 1.0 21.863388006095924 2.6841319918990614 8.39146321187489 0.8985725907938464 1.1245565681318301 0.2559757916898864 0.18406862426828818 0.5162459102552804 74.87879898144507 0.06042464803428438 0.05704243462794065 483.2056368288553 -2.6841319918990614 0.2259839773379837 QEPS(ph)PKPNNK ddPTM_BT-474_Trastuzumab_2h_R1 7 QEPSPKPNNK 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;J3QT54;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK 146.43 7.544e-05 1968477000.0 5559240.0 3834730.0 3518050.0 3392790.0 3489350.0 4762200.0 5137960.0 4693790.0 7315820.0 4991350.0 True False 5529309.669529624 3962366.6699067648 4013360.8605612298 3822316.866129404 3933698.0395021997 4433000.323012992 4889417.245886755 5044064.444382671 5512934.1879655775 4672797.769690275 1.1832974466378674 0.8479645097436777 0.8588774987425243 0.8179932140274833 0.8418292922963228 0.9486822545086993 1.0463575542690002 1.07945275892327 1.1797930190184518 1.0 22.155855170623138 2.229061019739924 2.4775388375814322 1.0908298580046223 0.8982345070905332 0.3593740523920439 0.1056885031750829 0.2917392685382968 3.6584884671085054 0.046237987021244445 0.032088850611708415 169.45758769593465 -2.229061019739924 -0.19259535091408908 QEPSPKPNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QEPSPKPNNK 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;J3QT54;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 78.655 0.026768 76044000.0 162970.0 138990.0 129360.0 124340.0 125530.0 166940.0 177640.0 166410.0 219140.0 167900.0 False True 162092.5876276694 143616.1981287707 147572.7635827234 140081.43125113263 141515.50142539758 155399.83073449013 169046.8745493003 178828.3592128579 165135.883325557 157184.47825357804 1.0312251529452758 0.9136792622556643 0.9388507390955706 0.891191247428045 0.9003147320761375 0.9886461593478153 1.0754679878542792 1.13769731718906 1.050586452048728 1.0 17.262099234958278 2.3699216208714486 3.223677575632109 1.0846162790677352 0.9322145500303622 0.6013240375775601 0.04921846210128182 0.1432933418032316 2.9747166706210257 0.018332024019616647 0.014822396103305924 234.38057797064263 -2.3699216208714486 -0.15240172903737292 QEPVKPEEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEPVKPEEGR 10 1 P61586 P61586 RHOA Transforming protein RhoA 0 124.42 0.0003976000000000001 506690000.0 555500.0 489000.0 472940.0 450850.0 509870.0 722650.0 611030.0 527280.0 604440.0 602460.0 False True 552509.2497218527 505276.0693932582 539525.841131828 507927.56377330783 574798.9222637411 672694.9064351214 581472.1445387247 566628.3110735882 455483.8610810427 564010.4870080434 0.9796081144746043 0.8958628979997182 0.9565883145079423 0.9005640417570182 1.01912807563726 1.1926992882767586 1.0309598100264263 1.0046414457281314 0.8075804822305492 1.0 19.105362462262725 3.2250283323202846 24.316965168927243 1.018898660289694 0.9321658138679574 0.14139481826187283 0.08985087115957088 304.28451758900894 546785.8391528418 0.02700155402533359 0.032455386636925154 1678.9135428037293 -3.2250283323202846 -0.08673284642173651 QEQGAENEELHQLWR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEQGAENEELHQLWR 15 0 Q6PGP7;D6RCE2;H0Y964 Q6PGP7 TTC37 Tetratricopeptide repeat protein 37 0 176.49 2.4741e-11 0.0 106360.0 135900.0 129450.0 127730.0 134620.0 149120.0 133730.0 117860.0 149830.0 148230.0 False True 105787.36957770688 140423.3493467152 147675.43480042933 143900.60490354788 151763.0590447463 138811.68539072212 127260.96900178977 126655.31168095344 112906.40411913925 138769.8344939122 0.7623225174513539 1.0119155208250648 1.0641753327659105 1.0369732401018377 1.0936314768855915 1.0003015849731502 0.9170650773340273 0.9127006034334485 0.8136235409583372 1.0 17.08233446630255 2.211374769822476 4.440903116490328 0.9031654005855447 1.0057039865282313 0.15427858384632775 0.09428849048029411 0.33411778436777845 15.192885268201184 0.03625260921369381 0.02724363800464594 162.69521112473635 -2.211374769822476 0.10253858594268661 QEQINTEPLEDTVLS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 QEQINTEPLEDTVLSPTK 18 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 QEQINTEPLEDT(0.001)VLS(0.988)PT(0.011)K;QEQINTEPLEDT(0.001)VLS(0.962)PT(0.037)K 153.83 3.1911999999999995e-08 214010000.0 654920.0 484160.0 477110.0 421890.0 388810.0 666210.0 616710.0 553000.0 935870.0 726990.0 True False 651393.9834884531 500274.9729191001 544282.940885538 475301.23074264376 438322.6488425782 620156.4707896534 586877.3812390178 594267.6680771019 705237.3785155109 680592.8757925481 0.9570978578491687 0.7350576103761468 0.7997188337473007 0.6983635116502757 0.6440306157071553 0.9112003561122841 0.8623031508456522 0.8731617523693284 1.0362103448324587 1.0 19.376432524193223 1.667191150552733 1.0530952125344704 1.0162820140441984 0.7739235970823785 0.4861744792505238 0.08901378056450304 0.4178866878019916 0.8749010748829742 0.07852300597321116 0.030385334961140188 46.47197721683263 -1.667191150552733 -0.24235841696181992 QEQLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 QEQLSPK 7 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 QEQLS(1)PK;QEQLS(1)PK;QEQLS(1)PK;QEQLS(1)PK 115.06 0.0060477 3908310000.0 7944700.0 5783200.0 5322000.0 5190500.0 5084000.0 6564800.0 7107300.0 6676800.0 9463400.0 6670000.0 True False 7901926.617939141 5975690.315981777 6071291.340346738 5847616.76780605 5731417.264771147 6110990.82787697 6763492.746477385 7175056.720103415 7131271.873063222 6244314.889525707 1.2654593430568233 0.9569809373331695 0.9722910275602531 0.936470512980522 0.9178616655583943 0.9786487286423726 1.0831440864429425 1.149054275295909 1.1420423215724287 1.0 22.574111860980558 2.130430363952464 4.597752369320913 1.1139311372196639 0.9941363514362601 0.148606834694347 0.10000878746074413 0.31741246085616576 11.42629997217092 0.038674932474682414 0.02803204671305646 135.03002993964787 -2.130430363952464 -0.11979478578340375 QEQLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 QEQLSPR 7 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 QEQLS(1)PR 79.97399999999998 0.04209 0.0 587970.0 575430.0 547050.0 631470.0 568380.0 519430.0 553410.0 514180.0 636220.0 547890.0 True False 584804.4348496076 594582.8396952188 624069.8849561606 711414.0372539221 640759.8239478008 483523.02670669864 526639.4440684994 552550.7225531352 479432.10591122526 512923.19112777174 1.1401403659752438 1.159204438364155 1.2166926661748496 1.3869796678323818 1.2492315321889673 0.9426811559125831 1.026741339011343 1.0772582174306329 0.9347054572773184 1.0 18.968383276730098 2.746825944435055 24.965073270343176 1.0098564470239453 1.234423498756944 0.7180418943803158 0.07310246829359641 368.16359471922243 1112022.586011202 0.024508533470778308 0.025587146300850242 558.2464171547247 -2.746825944435055 0.22456705173299873 QERLS(ph)PEVAPPAHR ddPTM_BT-474_Trastuzumab_2h_R1 6 QERLSPEVAPPAHR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR 112.3 0.00036333 5265295000.0 3635218.0 4084510.0 3982559.0 4204934.0 4099538.0 4381475.0 4239916.0 3850419.0 4461302.0 4462122.0 True False 3615646.3901986927 4220460.446211563 4543268.690176621 4737278.213258408 4621589.864434575 4078593.9461327386 4034815.0650279867 4137756.8178115143 3361873.90048405 4177345.5537451566 0.8655368208543633 1.0103211218491974 1.0875970473889573 1.1340403019834568 1.106346076706806 0.9763602013905976 0.9658801296461133 0.9905229923107153 0.8047871207278977 1.0 21.994155058780006 2.068745849855718 1.4720342201114753 0.9248179955579903 1.0432159457136632 0.22770480855158393 0.08552602705480875 0.622862137275021 2.541844102631696 0.0578142743616238 0.029254711207104777 117.15095947616729 -2.068745849855718 0.11839795015567289 QES(ph)CSPHHPQVLAQQGSGSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 QESCSPHHPQVLAQQGSGSSPK 22 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 2 QES(0.498)CS(0.502)PHHPQVLAQQGS(0.008)GS(0.03)S(0.962)PK 100.94 0.00036832 490090000.0 132940.0 95503.0 101390.0 91270.0 114380.0 137270.0 129300.0 100930.0 185160.0 127050.0 True False 132224.26581102266 98681.7596222174 115664.83070232169 102824.77264187596 128945.61501662519 127780.84799882282 123045.26502603329 108461.90911215525 139529.7990168848 118941.56022702258 1.1116742168056943 0.8296659252986467 0.9724509286876124 0.8644982665908815 1.0841089924371934 1.07431622516914 1.0345018578130134 0.9118924361269104 1.1730954155180549 1.0 16.859893380074602 3.229861679349862 24.999521268549227 1.0336156729899943 0.938356056982836 0.21218857005195169 0.09385000972955795 306.8506015718096 881844.0130954147 0.026379253046475842 0.03198117459531089 1697.7028563607835 -3.229861679349862 -0.09525961600715838 QES(ph)DPEDDDVKKPALQSSVVATSK ddPTM_BT-474_Trastuzumab_2h_R1 5 QESDPEDDDVKKPALQSSVVATSK 24 2 Q9H307 Q9H307 PNN Pinin 1 QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK 169.39 4.8381e-12 35667800000.0 4336640.0 2406180.0 2084160.0 1901710.0 2048340.0 3610790.0 3624470.0 3454400.0 5762770.0 3335780.0 True False 4313292.012085997 2486268.2467334755 2377591.612156533 2142466.291013282 2309183.957537633 3361184.586185396 3449140.5392800216 3712184.8690877752 4342612.5506617725 3122887.6644950607 1.3811870536122575 0.7961439903844507 0.7613439443205094 0.6860529488048994 0.7394386880422753 1.0763065941819159 1.104471537191112 1.1887026585338278 1.3905759723713689 1.0 21.574449243456677 2.497756203297384 3.0676934126253643 1.183160870455382 0.8530078963121107 0.3201049624476938 0.2042548281000212 0.28992829181804064 5.5753337643714 0.07459339797388746 0.06501575130131791 314.5981781635284 -2.497756203297384 -0.33015297414327127 QES(ph)FTKEPASGPPAPGKPPHISSHPLLQDLAATR ddPTM_BT-474_Trastuzumab_2h_R1 1 QESFTKEPASGPPAPGKPPHISSHPLLQDLAATR 34 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 QES(0.81)FT(0.19)KEPASGPPAPGKPPHISSHPLLQDLAATR 113.22 3.7773e-06 580020000.0 57990.0 79572.0 78411.0 97277.0 73104.0 100370.0 91171.0 73268.0 87923.0 90362.0 True False 57677.78828329471 82220.50591771015 89450.58723937013 109592.25822596447 82413.36107864475 93431.65814556595 86760.71042295791 78735.63020736551 66255.55475783945 84595.01979719961 0.6818106836734146 0.9719308076860564 1.057397793082983 1.295493026524386 0.9742105537207159 1.1044581391381016 1.025600687025668 0.9307359983615955 0.7832086914415822 1.0 16.36828511233474 -0.9908705062237142 7.056657867414958 1.0000000005126402 0.9928686246819173 0.0 0.15957144453932987 1.1607078933370155e-09 1.6448409153338746e-10 0.15578756470828165 0.03671947840744014 0.1021243943069774 0.9908705062237142 -0.007131375830722875 QESCLGNS(ph)PPFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 QESCLGNSPPFEK 13 0 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 QESCLGNS(1)PPFEK;QESCLGNS(1)PPFEK;QESCLGNS(1)PPFEK 228.99 6.8337e-12 736000000.0 999050.0 931100.0 834400.0 812040.0 833800.0 1055800.0 1059460.0 972360.0 1159220.0 1045860.0 True False 993671.2258048895 962091.1006381647 951876.2672651863 914844.1807396628 939979.487680207 982815.0310858684 1008209.8722697686 1044922.440744034 873545.7637521777 979112.3193942052 1.0148694956873712 0.98261566276015 0.9721829134517781 0.9343608109289174 0.960032336496174 1.0037817026895894 1.0297182992177716 1.0672140673202302 0.8921813631072035 1.0 19.901114843293623 2.6322353327561316 5.344453401256766 1.011299797085142 0.9713062166809996 0.03963740690460449 0.04617046994503248 0.46977511320868937 19.599053684959213 0.015402837947074883 0.014480775988665562 428.78080249626805 -2.6322353327561316 -0.03999358040414247 QESCSPHHPQVLAQQGSGSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 QESCSPHHPQVLAQQGSGSSPK 22 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 QESCSPHHPQVLAQQGSGSS(1)PK;QESCSPHHPQVLAQQGSGS(0.023)S(0.977)PK 178.33 1.0139e-16 1139400000.0 383490.0 390620.0 466900.0 489380.0 513970.0 653610.0 582140.0 364970.0 624780.0 557340.0 True False 381425.33244974446 403621.5505652236 532635.4616324488 551335.4578227384 579421.032961138 608427.479132444 553979.6642092419 392205.9146801079 470811.3406230783 521770.08403721906 0.7310218506558466 0.7735620782283723 1.020824071612459 1.0566636046987516 1.1104910969173283 1.1660834872415635 1.0617313662807184 0.7516834074606144 0.9023348693741786 1.0 18.993054703282837 4.27362658220435 5.839860780603758 1.0006825143372688 0.7462130656805772 0.4685598838798827 0.10909598786583685 0.18740083612862773 16.873625366308694 0.032284300609547 0.08769897131756982 18777.016253641435 -4.27362658220435 -0.25446944865669163 QESDKNGES(ph)ASPERDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QESDKNGESASPERDR 16 2 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 QESDKNGES(0.617)AS(0.383)PERDR 156.92 9.2091e-08 282360000.0 290710.0 291640.0 275090.0 274100.0 285250.0 356580.0 392750.0 323030.0 487440.0 357430.0 True False 289144.8496609171 301347.0610998969 313820.2808748558 308801.0318958938 321574.89669078856 331930.4638990322 373751.1820493001 347136.1389131035 367316.943361365 334618.5113887814 0.8641029704569152 0.9005690087174298 0.9378449493795014 0.9228450351245177 0.9610194467608579 0.9919668296933338 1.1169471183710211 1.0374086522361528 1.0977185387529036 1.0 18.352157733172533 2.788265368685342 1.4012037626194436 1.065521902946068 0.9037792193325925 0.7803812558927006 0.03675245021039584 0.17502702618173102 0.69958279679152 0.014859907907721234 0.014791070274519959 614.1371492061846 -2.788265368685342 -0.16174268361347555 QESDKNGESAS(ph)PERDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QESDKNGESASPERDR 16 2 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 QESDKNGES(0.008)AS(0.992)PERDR;QESDKNGES(0.02)AS(0.98)PERDR;QESDKNGES(0.006)AS(0.994)PERDR;QESDKNGESAS(1)PERDR 175.85 1.7614e-09 740118000.0 1022588.0 1013614.0 943052.0 946085.0 990748.0 1341714.0 1292239.0 1205320.0 1587250.0 1355106.0 True False 1017082.4998282087 1047351.5292473971 1075825.5244450711 1065859.26399572 1116913.88517653 1248964.4692350286 1229728.462737633 1295267.0988909458 1196093.5055603278 1268621.9749153843 0.8017222781404578 0.8255820488347242 0.8480268714538288 0.8401708980855481 0.8804150544933033 0.984504835901438 0.9693419214338097 1.0210032022954187 0.9428289350262169 1.0 20.274830807011874 2.891124684550311 1.935642378616067 0.9899401591886543 0.8274275666144547 0.9149692179706249 0.022397470932579638 0.08488853100574686 0.6325466646898432 0.007736894909912429 0.008461144532471402 778.2599549014083 -2.891124684550311 -0.1625125925741996 QETVADFT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 QETVADFTPK 10 0 O75400-3;O75400;O75400-2;F5H578 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK 202.25 2.5387e-06 7356010000.0 17192800.0 12742100.0 11323300.0 9900550.0 10596300.0 15445200.0 14174900.0 14203800.0 19634200.0 14027300.0 True False 17100235.87509967 13166213.095737897 12917522.216112044 11153958.614873737 11945675.995809294 14377509.678090008 13489205.933623496 15263759.68143495 14795614.494800806 13132065.704624278 1.3021741026682538 1.0026003061423607 0.9836626244996104 0.8493681699251643 0.9096570383136894 1.0948399133448719 1.0271960434125345 1.1623273919547954 1.1266783785273577 1.0 23.646590537594683 2.67940049442903 23.975702823918883 1.0933188973462198 0.9987786922042634 0.07833496056505529 0.11896051543098508 367.0179101002399 148739.72613928767 0.039899998103502414 0.03761809532141897 477.96984113119436 -2.67940049442903 -0.09454020514195638 QEVPHDGPMCDLLWSDPEDTTGWGVSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QEVPHDGPMCDLLWSDPEDTTGWGVSPR 28 0 P60510;H3BTA2;H3BV22 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit;Serine/threonine-protein phosphatase 0 ; 219.27 2.8197000000000004e-34 119065000.0 47007.0 48292.0 40729.0 44305.0 44532.0 45443.0 47368.0 42553.0 47850.0 42199.0 False True 46753.91953496865 49899.37002686954 46463.28917718572 49914.00845730603 50202.88623815667 42301.63237131566 45076.62887666777 45728.52093975573 36058.00865715023 39505.82369161846 1.1834690474986336 1.2630889667402674 1.1761124015506441 1.263459505285439 1.2707717887377625 1.070769532652229 1.1410122524854787 1.1575134161664744 0.9127264106329792 1.0 15.269777721237089 1.6329261361984289 0.8364196396182317 0.9687084873786935 1.224385412370985 0.6504150544858525 0.06660254612406856 0.36128348675070077 0.49645323369596894 0.06043075874375601 0.025468650317406936 42.946337841445875 -1.6329261361984289 0.25567692499229144 QEVPSWLENMAYEHHYK ddPTM_BT-474_Trastuzumab_2h_R1 3 QEVPSWLENMAYEHHYK 17 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ;; 222.3 1.9709e-15 746050000.0 730890.0 686840.0 691390.0 735230.0 686360.0 850950.0 810490.0 560090.0 923310.0 825340.0 False True 726954.9694495134 709701.0541964513 788731.7023303898 828310.0426151707 773763.8776255556 792125.8294208354 771283.5023275295 601886.7598793915 695772.6222201337 772666.0945908751 0.9408397424691378 0.9185093783262697 1.0207924326587947 1.0720155166815737 1.0014207728828348 1.0251851802042176 0.998210621285152 0.7789739501874858 0.9004829215245217 1.0 19.559485566787938 1.7700729901969614 24.99999999999699 0.8705967054093326 0.9988017589108763 0.3309214084474579 0.06510509048364732 24.982049314966964 19829.4138815923 0.03011464077623934 0.016704496201915713 58.89426283522607 -1.7700729901969614 0.12820505350154365 QEYDESGPSIVHR ddPTM_BT-474_Trastuzumab_2h_R1 30 QEYDESGPSIVHR 13 0 P60709;A0A2R8YFE2;Q9BYX7;P63261;Q6S8J3;A5A3E0;P0CG38;P0CG39 P60709;P63261;Q6S8J3 ACTB;POTEKP;ACTG1;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 266.35 2.0624e-24 319348022300.0 57359101.2 68934668.4 67160328.4 70549210.8 71235937.4 75307528.3 75384124.7 66643679.900000006 74527987.5 72594019.8 False True 57050286.17233437 71229117.16580702 76615918.87068073 79480733.6537064 80307411.77940917 70101696.12347442 71737506.59293912 71616969.70388754 56161563.60449291 67961007.30549683 0.8394561592632549 1.048088013846226 1.127351137193693 1.1695049382718292 1.1816689446407564 1.0314987800041693 1.0555686184942237 1.053795000152904 0.8263792111267081 1.0 26.01820390025155 1.3530501516010556 6.9452411869493025 0.9146378221096892 1.071482922529692 0.2708642582477502 0.09812326283966827 0.26755592101714637 14.64770549295678 0.06806170762725333 0.02466034964502947 22.54499542960765 -1.3530501516010556 0.15684510042000277 QEYDESGPSIVHRK ddPTM_BT-474_Trastuzumab_2h_R1 4 QEYDESGPSIVHRK 14 1 P60709;A0A2R8YFE2;Q9BYX7;P63261;Q6S8J3;A5A3E0;P0CG38;P0CG39 P60709;P63261;Q6S8J3 ACTB;POTEKP;ACTG1;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ;;; 193.16 1.8884e-07 2668080000.0 729507.0 1172430.0 1171150.0 1389420.0 1351420.0 1358880.0 1403540.0 1155430.0 2087620.0 1644170.0 False True 725579.415367848 1211453.6238010987 1336037.7401817138 1565320.4295395592 1523515.3265061018 1264943.8240594473 1335645.4081565244 1241654.053754656 1573154.023674817 1539237.6629552422 0.47138881332644883 0.7870478048693155 0.8679866484143866 1.0169452497246199 0.9897856342606933 0.8217989037708657 0.8677317611837583 0.8066681862310698 1.0220345184735524 1.0 20.553784574671315 4.755488814941469 1.8859402411336315 0.9119101984136601 0.32089395064017406 0.7607834683825911 0.07699756521862425 0.43940439098892375 1.5668869558402878 0.021047923411854155 0.4632146902920906 56949.35568893194 -4.755488814941469 -0.5910162477734859 down QEYVDYSESAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QEYVDYSESAKK 12 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 121.45 0.000603 164260000.0 230340.0 211760.0 184830.0 208360.0 204130.0 299630.0 236340.0 268200.0 428550.0 316440.0 False True 229099.87503317997 218808.30358837685 210852.4574288403 234738.35463636808 230124.74552669784 278917.28335315274 224907.331293524 288214.4458920046 322939.59477579367 296244.52828208625 0.7733471951759708 0.7386070718579685 0.711751398925637 0.7923803892602144 0.7768067375326215 0.941510329222235 0.7591948874051965 0.9728937360070483 1.0901115934478567 1.0 18.176428981719603 1.897710850966461 0.7998141451110466 1.0518827308152106 0.7516921529731284 0.7260116376316768 0.06571812275699855 0.316579894910078 0.3806244103740622 0.05692255181062226 0.027674954888512675 79.01523770808411 -1.897710850966461 -0.30019057784208214 QFAEILHFTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QFAEILHFTLR 11 0 E5RI16;Q9NUQ9;A0A087X178;A0A1W2PRQ0 E5RI16 FAM49B Protein FAM49B 0 95.018 0.0037522 0.0 39138.0 54902.0 56992.0 51096.0 36504.0 48806.0 50734.0 39095.0 64206.0 48071.0 False True 38927.285356640605 56729.37988104013 65015.97821665561 57564.748361009115 41152.56802384064 45432.15609696613 48279.80259729904 42012.46742038751 48383.29161632159 45003.067624346324 0.8649918197038914 1.2605669541147002 1.4447010314799618 1.2791294327204268 0.9144391748436591 1.0095346494199358 1.0728113692227512 0.9335467477701249 1.0751109684386624 1.0 15.457735725338244 3.2441683442290272 24.997492536537468 0.998588508908212 1.2323882934332033 0.3391994858387746 0.14346908158846272 148.3062710517394 661098.5330305061 0.040902196560392456 0.0538789642510433 1754.5604849064987 -3.2441683442290272 0.23379978452499128 QFAPEYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QFAPEYEK 8 0 P13667;A0A499FI48;C9JMN9 P13667 PDIA4 Protein disulfide-isomerase A4 0 92.062 0.026682 0.0 301930.0 309740.0 285230.0 269080.0 249550.0 335470.0 333180.0 299880.0 394830.0 293090.0 False True 300304.4424275763 320049.508658216 325387.90473639645 303145.5004106061 281328.71330126654 312279.74851143756 317062.8105287989 322258.5683597856 297529.43695094314 274384.74527302664 1.0944647893189479 1.166426028311999 1.185881906126447 1.1048190747957254 1.0253074128495383 1.138109001652783 1.1555409547761317 1.1744769850055699 1.0843512333562362 1.0 18.06584074993179 -3.026732712008972 0.854691761575062 0.019102358474511142 1.1300157992083377 0.3883052478310942 0.046976000074215506 6078.8673765956955 188.81707059043495 11297.938608862707 0.016076097419682887 0.0009403018444302955 3.026732712008972 1.1109134407338266 QFCQEGQPHVLEALS(ph)PPQTSGLS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 4 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 2 QFCQEGQPHVLEALS(1)PPQTS(0.001)GLS(0.995)PS(0.004)R;QFCQEGQPHVLEALS(0.999)PPQT(0.032)S(0.021)GLS(0.548)PS(0.4)R;QFCQEGQPHVLEALS(1)PPQT(0.001)S(0.004)GLS(0.964)PS(0.031)R;QFCQEGQPHVLEALS(1)PPQTS(0.001)GLS(0.965)PS(0.034)R 233.27 3.8791e-45 3487700000.0 777690.0 769970.0 830470.0 860460.0 877860.0 976520.0 902260.0 816870.0 968900.0 962050.0 True False 773503.0034494809 795597.9859933056 947392.9574253574 969394.1477750478 989650.2675161286 909015.470880821 858614.2368320848 877828.9873818113 730127.5775948358 900651.1453475559 0.8588264251315538 0.8833586567930128 1.051897798963842 1.0763258924197165 1.098816420351332 1.0092869759578638 0.9533260922027149 0.9746603797889607 0.8106663510799 1.0 19.7806088808798 -0.2561927908105646 6.5848936506579685 1.000000012418846 0.9760505780574019 0.004671390475903148 0.09065738886046858 0.0 0.0 0.09191379619112232 0.02166428952378029 0.5543795596784771 0.2561927908105646 -0.023949434361444033 QFCQEGQPHVLEALSPPQT(ph)SGLSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 QFCQEGQPHVLEALS(0.033)PPQT(0.439)S(0.439)GLS(0.088)PS(0.001)R 147.26 7.113200000000002e-07 3083300000.0 175750.0 173420.0 150770.0 163510.0 161690.0 171000.0 175200.0 147080.0 192640.0 191030.0 True False 174803.78152766076 179192.17986539644 171997.10548366758 184210.3492349419 182280.26308828613 159179.17249070224 166724.9066710054 158055.85645710674 145166.45324374954 178838.30185098868 0.9774404012922827 1.0019787596434606 0.961746469875221 1.0300385729922068 1.0192462196390422 0.8900731601854127 0.9322662144819716 0.8837919775641896 0.8117190318923116 1.0 17.44829622646563 2.733878816632164 24.959195114874916 0.8978572416459374 0.9980619496522148 0.49603866668551055 0.0474615826683606 307.06374241741617 1636985.7470628335 0.01460874338846095 0.014197708180703539 541.8496742726156 -2.733878816632164 0.10020470800627745 QFCQEGQPHVLEALSPPQTSGLS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 5 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 QFCQEGQPHVLEALSPPQTSGLS(0.986)PS(0.014)R;QFCQEGQPHVLEALSPPQTSGLS(0.991)PS(0.009)R;QFCQEGQPHVLEALSPPQTSGLS(0.99)PS(0.01)R;QFCQEGQPHVLEALSPPQTS(0.001)GLS(0.929)PS(0.069)R;QFCQEGQPHVLEALSPPQTS(0.001)GLS(0.926)PS(0.073)R 253.61 9.6393e-53 4666670000.0 2134860.0 2031930.0 2078040.0 2305640.0 1979210.0 2194230.0 2127060.0 1941430.0 2181240.0 2428390.0 True False 2123366.150965244 2099561.5617223755 2370609.9693525266 2597533.7875974057 2231250.6618032423 2042548.044761833 2024165.9816417159 2086309.3649817833 1643702.6291185447 2273408.07115072 0.9340013251076698 0.9235304424073987 1.0427560275848788 1.1425726074257423 0.9814562946782628 0.89845200722278 0.8903663215276408 0.9177012219921283 0.723012577450101 1.0 21.116425236931416 2.7663177004391377 3.8347836946764167 0.8830360400671232 1.0121231811485372 0.33019175882476937 0.08532803377054296 0.27420642601216905 8.946657956110531 0.02818889624340915 0.02882468755205818 583.8720693603295 -2.7663177004391377 0.12908714108141395 QFDQLLAFFDS(ph)RK ddPTM_BT-474_Trastuzumab_2h_R1 1 QFDQLLAFFDSRK 13 1 Q9BXT8-2;Q9BXT8-1;Q9BXT8-4;Q9BXT8-5;Q9BXT8 Q9BXT8-2 RNF17 RING finger protein 17 1 QFDQLLAFFDS(1)RK 61.78 0.086475 443440000.0 455580.0 782160.0 729210.0 778870.0 761040.0 771060.0 757120.0 657390.0 544450.0 874750.0 True False 453127.20789969683 808193.7227742953 831876.4295930573 877474.8621406603 857953.9329625146 717758.4370800039 720495.2131207297 706447.7799587807 410277.59275622695 818922.706088846 0.5533210943238109 0.9868986618214654 1.0158180050545649 1.0714990018184474 1.0476616737861388 0.8764666454395922 0.8798085677240487 0.8626550157984474 0.5009967237515032 1.0 19.643367764148458 1.4998621170020192 4.610229961792017 0.7305829047652249 0.9313891613690013 0.11173820937607193 0.17875519178999713 0.2910551698382737 13.41500161901558 0.10809477435547742 0.04461747563310804 31.612738364183166 -1.4998621170020192 0.20080625660377638 QFDTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 QFDTDR 6 0 A0A0C4DGQ5;K7ELJ7;P04632;K7EKD8;U3KQE2;K7EIV0;A0A075B7C0;U3KPR7 A0A0C4DGQ5 CAPNS1 Calpain small subunit 1 0 ;; 110.61 0.06643099999999999 3029310000.0 5122960.0 5385530.0 5035440.0 5456370.0 5247940.0 5644110.0 5965670.0 4947060.0 6153200.0 5775220.0 False True 5095378.55257436 5564784.110428363 5744386.183170905 6147145.882545774 5916234.052022626 5253945.960505824 5677087.751027493 5316234.737861672 4636826.308655728 5406640.515185404 0.9424296914624126 1.0292498816591908 1.0624686747781529 1.136962197741933 1.094253267885288 0.9717579605578153 1.0500213089963157 0.9832787519218612 0.85761690566119 1.0 22.366301004863647 1.5372931006572546 3.9230677577049198 0.9257847440636975 1.0440332141878652 0.34749351749613167 0.06148010993175396 0.1924365150001112 6.552053788525057 0.03981456879818968 0.016355674333192717 34.458240725317005 -1.5372931006572546 0.11824847012416773 QFEDELHPDLK ddPTM_BT-474_Trastuzumab_2h_R1 6 QFEDELHPDLK 11 0 Q9Y3C6 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 0 ;;;;; 172.99 1.2707e-05 3568320000.0 12045810.0 11146020.0 10422530.0 10027680.0 9945640.0 12208440.0 11832080.0 11661050.0 16203000.0 12551070.0 False True 11980956.697375296 11517008.537788631 11889931.62974523 11297183.259838806 11212158.301573271 11364499.278376525 11259717.087465016 12531256.764612082 12209987.759076389 11750049.967088353 1.019651553051579 0.9801667712092743 1.0119047717285188 0.9614583164737157 0.9542221805846184 0.9671873149653195 0.9582697196184911 1.0664854021652566 1.0391434754129822 1.0 23.486163556075624 1.7428153024353576 23.245411330065323 1.0395839424433968 0.9782123581938321 0.502125652056628 0.02553912311968688 0.36058686835822934 1982.5478788660052 0.01192109135440889 0.0066096199052273815 55.31148294862261 -1.7428153024353576 -0.06137158424956468 QFEEIWER ddPTM_BT-474_Trastuzumab_2h_R1 6 QFEEIWER 8 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;;;; 209.84 0.00010224 1956690000.0 1089178.0 1239969.0 1235250.0 1249449.0 1052604.0 1251830.0 1286882.0 1061268.0 1380600.0 1238715.0 False True 1083313.9866670524 1281240.6185879093 1409162.4630145263 1407629.1152911081 1186646.8801272952 1165293.938590852 1224630.6012933606 1140465.207169711 1040369.6290921954 1159659.1481827328 0.9341658610331159 1.1048424190812474 1.2151522843783733 1.2138300443686076 1.0232721243883205 1.0048590056974496 1.0560263360250661 0.983448635710674 0.8971339817588018 1.0 20.14526939408455 3.062962975356341 8.556876290552127 0.9947174378094046 1.123056708676934 0.3576018721441989 0.08141170120810584 0.32772722121147846 40.42192093192879 0.024810271459274624 0.029674793423386973 1156.013685058557 -3.062962975356341 0.1283392708675295 QFEQNDLSFVGQDVDGDR ddPTM_BT-474_Trastuzumab_2h_R1 3 QFEQNDLSFVGQDVDGDR 18 0 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 0 ;; 316.39 5.645199999999998e-61 544840000.0 215710.0 212920.0 212137.0 191176.0 195647.0 224939.0 202020.0 190828.0 220642.0 228468.0 False True 214548.64132763393 220006.9134871421 242004.04567214122 215378.861998283 220561.48575937815 209389.4963794503 192247.5208086561 205068.55436494973 166267.73555132563 213886.97663870442 1.0030935249042638 1.0286129475698533 1.1314576019321263 1.0069751107946074 1.0312057761793896 0.9789726315742393 0.8988276136765379 0.9587706441395416 0.7773625966586236 1.0 17.706489115374744 2.5244996737692684 1.4909912182335483 0.9051957374166508 1.0481287769553134 0.49011853311271514 0.06292844364983236 0.3277649730086607 1.4756420147743894 0.028485385161027908 0.022566628918933775 334.57976652557846 -2.5244996737692684 0.14293303953866254 QFFDER ddPTM_BT-474_Trastuzumab_2h_R1 4 QFFDER 6 0 Q13409-2;Q13409-3;Q13409-6;Q13409;Q13409-5;Q13409-7;E7EQL5 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 ;;; 132.09 0.035004 2456400000.0 4641200.0 5219200.0 4965400.0 5288100.0 4716200.0 5146100.0 5195200.0 4699600.0 5785500.0 5408400.0 False True 4616212.294885793 5392917.916926974 5664485.159969502 5957572.917798896 5316780.114892542 4790362.21961639 4943888.328408718 5050308.01608526 4359741.046728169 5063231.281635801 0.911712706395354 1.0651138802382853 1.118749044807499 1.1766345612942564 1.0500764865662675 0.9461077231433018 0.9764294880899601 0.9974476248799035 0.8610590360627665 1.0 22.271626955457762 2.826391673001994 4.8770512495169225 0.9613146432887069 1.0757003357658066 0.3552772533321612 0.07250856394617823 0.2579008164105067 10.46996742263252 0.023192682589895996 0.02459563581394631 670.4890243368375 -2.826391673001994 0.11438569247709973 QFGAQVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QFGAQVHR 8 0 Q8NFW8;Q8NFW8-2 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase 0 117.04 0.0021563000000000003 77591000.0 209430.0 269740.0 309930.0 276270.0 263650.0 241070.0 259200.0 232770.0 298000.0 255050.0 False True 208302.4521498604 278718.1328387268 353565.45004014764 311245.7536733989 297224.26472401887 224405.39831774024 246661.50575984348 250140.47938211024 224561.89299541814 238772.49064070923 0.872388823314247 1.1672958308171497 1.4807629182549849 1.3035243416786366 1.2448011239756442 0.9398293652488312 1.0330398828523557 1.0476101275774976 0.9404847785975715 1.0 17.86527710541819 2.746382586207368 24.34240977708041 1.0028598654162995 1.23099458239517 0.36352097096762903 0.14535340913363518 480.1919081407657 1494383.664605292 0.047232560324810526 0.049244742320698205 557.6768109056528 -2.746382586207368 0.22813471697887056 QFGFIVLTTSAGIMDHEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QFGFIVLTTSAGIMDHEEAR 20 0 P62244 P62244 RPS15A 40S ribosomal protein S15a 0 ; 163.91 1.8925e-11 946450000.0 970120.0 975680.0 946230.0 970490.0 849520.0 1102780.0 1073660.0 906790.0 1334060.0 1091600.0 False True 964896.9817104643 1008154.9189889857 1079450.9592214022 1093353.9344934179 957701.336500467 1026547.4142648908 1021722.9640205009 974459.2743863196 1005298.788488146 1021933.1534342221 0.9441879622633957 0.9865174797402996 1.0562833347698826 1.0698879186169712 0.9371467529770386 1.0045152276498344 0.9997943217587032 0.9535450250455563 0.9837226486975434 1.0 19.96286939929539 3.225313302851432 24.999815964340943 0.9783746126411536 1.0152450800129091 0.16326794640778464 0.038077573032318957 422.013091414961 796406.6900890471 0.011585789823639359 0.01392201240022658 1680.015555164783 -3.225313302851432 0.03687046737175559 QFHDSK ddPTM_BT-474_Trastuzumab_2h_R1 5 QFHDSK 6 0 Q02543;M0R3D6;M0R1A7;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 0 ;;;; 108.24 0.030583 3482460000.0 4672920.0 7614640.0 8837410.0 9187080.0 9439820.0 6652240.0 10120300.0 9572790.0 9179380.0 10556230.0 False True 4647761.51793022 7868088.689252907 10081640.51185525 10350163.386027467 10641925.12280328 6192386.306488593 9630742.425699633 10287160.199442668 6917244.796390206 9882522.3637568 0.4703011383991842 0.7961619918117632 1.0201485147990859 1.04732000647787 1.076843009415442 0.6265997767127321 0.9745227049542993 1.0409447933221825 0.6999472950102835 1.0 23.23644788413451 4.6560296393527665 2.8608933337248708 0.9418346127849638 0.4283086955698761 0.4852742063090627 0.1447232659600597 0.27876368011594144 3.4943640604808417 0.035544828067130635 0.2994660607689441 45292.84899192172 -4.6560296393527665 -0.5135259172150877 QFKEEDGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 QFKEEDGLR 9 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 0 ;; 138.36 0.00012654 1791830000.0 3041740.0 3930900.0 4246700.0 3305310.0 4444900.0 5649100.0 4242500.0 3609100.0 5613300.0 4410900.0 False True 3025363.6098090843 4061737.630220771 4844598.44702189 3723761.9070989336 5010931.668013626 5258591.013551021 4037274.067076148 3878429.3686384596 4229977.429366378 4129392.585638519 0.7326413139624696 0.9836162452431761 1.1731988050423596 0.9017698922717314 1.213479116865997 1.2734538808055462 0.9776919930348238 0.9392251495116071 1.0243582661715624 1.0 21.977498152873316 4.692303270325022 3.4835543739864234 1.0580443089688385 0.7077535239761489 0.4212855673156962 0.11580038657909346 0.26297422814024946 5.512351287439019 0.029786537710385044 0.22415029029656933 49238.3249703147 -4.692303270325022 -0.3502907849926896 QFLISPPAS(ph)PPVGWK ddPTM_BT-474_Trastuzumab_2h_R1 2 QFLISPPASPPVGWK 15 0 V9GYW9;E9PD55;E9PDJ2;P53805-4;P53805-3;P53805-2;P53805;H0YF64;Q9UKA8-6;Q9UKA8-5;Q9UKA8-2;Q9UKA8 V9GYW9 RCAN1;RCAN3 Calcipressin-1;Calcipressin-3 1 QFLIS(0.001)PPAS(0.999)PPVGWK;QFLIS(0.001)PPAS(0.999)PPVGWK 167.05 1.3980000000000002e-06 695430000.0 1906880.0 1440620.0 1301870.0 1345220.0 1187260.0 1801780.0 1505600.0 1500740.0 1937110.0 1729280.0 True False 1896613.5699542866 1488570.1658268194 1485161.979943107 1515524.7140714873 1338450.52355865 1677227.1895339002 1432768.3760494613 1612732.839403307 1459735.1964441433 1618915.8698889066 1.1715331261064457 0.919485807455188 0.9173805801564118 0.9361355597653668 0.8267573062030068 1.0360187460815953 0.8850171912563812 0.9961807586171703 0.9016745240407789 1.0 20.62659658445957 4.740847819942817 24.95557163347879 0.9350065058493263 1.171533210282035 0.5957414031667514 0.05835289195220586 128.593487008486 1402988.6036464537 0.012790856603064983 0.08479087717240262 55061.47230520168 -4.740847819942817 0.23652670443270873 QFYINVER ddPTM_BT-474_Trastuzumab_2h_R1 6 QFYINVER 8 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;Q14240;Q14240-2;E7EQG2;J3KTN0 P60842;Q14240;J3KTN0 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ;;;;; 134.48 0.0020353 3489340000.0 3460610.0 3619870.0 3228340.0 3616620.0 3356400.0 3345810.0 3134920.0 3030600.0 3912910.0 3543350.0 False True 3441978.46026992 3740355.184692376 3682862.2107656896 4074483.7211795934 3783817.645058589 3114522.029889564 2983271.9430426275 3256758.7610749803 2948625.7608077293 3317210.3693854394 1.037612354053866 1.127560440306151 1.1102287165007243 1.228286200592834 1.140662551877768 0.9388979543273808 0.8993315499599506 0.9817763718369003 0.8888871770149459 1.0 21.6615390765497 2.7375269397275734 24.916889791574697 0.9405620716254058 1.133284791316031 0.7547447295699266 0.05329331288587651 42.746184691947875 1030387.5717609557 0.01689556662452748 0.016771756090805404 546.4204438454188 -2.7375269397275734 0.19272271969062527 QGAIYHGLATLLNQPS(ph)PMMQR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGAIYHGLATLLNQPSPMMQR 21 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR 259.29 9.7137e-37 3311500000.0 1128090.0 1100350.0 1090540.0 1088530.0 1008330.0 1151080.0 1025010.0 895410.0 1236260.0 1067730.0 True False 1122016.4887825802 1136974.484574378 1244078.5528563955 1226337.7863905055 1136734.8486598514 1071508.5489508617 975426.3503815491 962230.0409998514 931600.288035288 999586.5572703561 1.1224805702135014 1.1374447528378104 1.244593120833569 1.226845016542995 1.137205017806578 1.07195173960413 0.9758298001177776 0.9626280325612653 0.9319856107101688 1.0 19.93097197421097 2.514851633653561 1.7963927456354483 0.9599492803081552 1.1828965547305688 0.8653935407512234 0.03848296731867264 0.12387438068729482 0.807510476944105 0.01765221665749843 0.014485085273551539 327.2288858410956 -2.514851633653561 0.22294727442241358 QGANINEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGANINEIR 9 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 ;;; 159.28 0.00015395 777020000.0 628310.0 719250.0 726170.0 739470.0 709460.0 794500.0 785090.0 657490.0 759150.0 773170.0 False True 624927.2487718039 743189.8014541935 828408.4240172103 833086.8261804323 799805.5257011274 739578.0850518288 747112.1973649525 706555.2424665708 572067.6545888322 723825.6286558597 0.8633671205208503 1.0267525382242861 1.1444861734939673 1.1509496116177456 1.1049698905886518 1.021762777901663 1.0321715172649188 0.9761401289128709 0.7903390429144637 1.0 19.465282664877474 1.5686631756266571 3.1402711998868837 0.8919849819792179 1.057430364443078 0.30933144985732863 0.09060886774090533 0.2376760575178221 5.347727107329534 0.062213188831653866 0.024579697150118193 37.03933455825203 -1.5686631756266571 0.1654453824638601 QGAPTSFLPPEASQLKPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGAPTSFLPPEASQLKPDR 19 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0QYZ0;M0R0K8;M0QYI8;M0QZV6;M0R203 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 147.53 9.5296e-08 475680000.0 245550.0 222910.0 221570.0 218070.0 238690.0 266610.0 249730.0 243100.0 299050.0 265580.0 False True 244227.98608316964 230329.42459805953 252765.13007903553 245677.6396407789 269085.7566735297 248179.87823243346 237649.60583875712 261241.35643678732 225353.13456469728 248630.45702552257 0.98229311487007 0.9263926364999426 1.0166297930791661 0.9881236698831288 1.0822718981926953 0.9981877570492386 0.9558346498730113 1.0507214585137097 0.9063778318259865 1.0 17.923643510602965 4.227412647448505 24.990279163428017 1.0041193402298523 0.9543428708340771 0.12430660759978518 0.04710770106956573 334.71188149876843 750324.7469009877 0.011187797154901681 0.024525625094102166 16881.562751830472 -4.227412647448505 -0.04977646939577518 QGCDCECLGGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGCDCECLGGGR 12 0 Q9NRX4;Q9NRX4-2 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 ; 163.9 0.00013667 430860000.0 242760.0 280390.0 243620.0 269510.0 246320.0 250130.0 235100.0 211343.0 280860.0 294660.0 False True 241453.00713317128 289722.61165066564 277919.57841699966 303629.93836651754 277687.3919469762 232839.10184268586 223727.31483078416 227114.4878380088 211645.81633118528 275854.54652888176 0.8752910190221981 1.0502731069554145 1.0074859447274025 1.1006885410704215 1.0066442458214206 0.844064760840575 0.8110336322021072 0.8233124691828492 0.7672370058581801 1.0 18.07354823305035 2.736537426681787 5.260452796927326 0.8330522004163264 1.0163737012844134 0.5027267037566525 0.07813276197553627 0.12488939867951787 11.84891693560483 0.023705111620254106 0.023642892443460503 545.1768759825463 -2.736537426681787 0.18332150086808696 QGDDEQS(ph)DWFYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QGDDEQSDWFYEK 13 0 Q9NW75-2;Q9NW75 Q9NW75-2 GPATCH2 G patch domain-containing protein 2 1 QGDDEQS(1)DWFYEK 151.57 4.699100000000001e-05 38537000.0 80916.0 48053.0 36630.0 37513.0 36182.0 46172.0 42788.0 45831.0 63098.0 57630.0 True False 80480.3572466127 49652.415056348116 41787.185606332394 42262.14195370546 40789.56323248417 42980.23831719707 40718.180973966795 49251.14194510245 47548.343369882256 53952.00406047473 1.4917028319541639 0.9203071493079811 0.7745251790738523 0.7833284914928069 0.7560342556833145 0.7966384023292367 0.7547111860446526 0.9128695551308328 0.8813081960140977 1.0 15.71938892952057 4.734228364515365 3.3360524292100036 0.8246859388615507 1.5778224378953554 0.871986046700326 0.07525550856663914 0.09678126269271496 1.7873967723882302 0.018089522545175228 0.18597546345264282 54228.596498449304 -4.734228364515365 0.7531364990338046 QGDTGDWIGTFLGHK ddPTM_BT-474_Trastuzumab_2h_R1 3 QGDTGDWIGTFLGHK 15 0 Q9Y3F4;Q9Y3F4-2 Q9Y3F4 STRAP Serine-threonine kinase receptor-associated protein 0 ;; 220.59 1.6498e-12 2948700000.0 2232770.0 2244214.0 2141450.0 2069868.0 2017230.0 2445591.0 2634933.0 2332627.0 2783350.0 2482760.0 False True 2220749.0144040682 2318911.3063339884 2442947.5461829253 2331913.0765716503 2274112.2834410504 2276533.0504719806 2507471.2243684507 2506699.471579898 2097430.687479188 2324308.131202224 0.9554451858564075 0.9976780940548342 1.051042894609389 1.0032719178956244 0.9784039615542667 0.9794454616025748 1.0788032751369705 1.0784712396472727 0.9023892569675407 1.0 21.14836990738246 2.3090443202567505 24.999957362065317 1.0296210341188143 0.9966481641254323 0.00468176371689788 0.052154413436661044 127.32795113131743 45159.833876780256 0.01851227198106038 0.015488476319750507 203.72499708255197 -2.3090443202567505 -0.032972869993382004 QGEAEFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGEAEFNR 8 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 95.502 0.022345 698330000.0 983260.0 728460.0 812720.0 723180.0 764760.0 894870.0 766240.0 744880.0 935690.0 852030.0 False True 977966.2374104555 752706.3507366308 927143.9117111248 814734.5138506846 862147.652912348 833009.7431973949 729174.0438789448 800466.7280239997 705101.7371036339 797652.715940418 1.226055171463249 0.943651711696617 1.1623403182649972 1.021415081487095 1.080855910953543 1.0443263422168527 0.9141497663168638 1.0035278662346985 0.8839708346913003 1.0 19.605401233361277 2.3925727296782893 4.908521016657505 0.955542686257865 1.0781075141453829 0.4002804000065201 0.07843443525332837 0.21507120850356679 9.108240896989225 0.025305708824226662 0.02103763947569625 246.9293593677723 -2.3925727296782893 0.12256482788751788 QGFDFLCMPVFHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGFDFLCMPVFHPR 14 0 O14744-2;O14744;G3V580;O14744-4;O14744-3;O14744-5;G3V2L6;C9JSX3 O14744-2 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed 0 133.14 4.6329e-05 159990000.0 180260.0 203100.0 212510.0 198730.0 143480.0 158520.0 176590.0 154170.0 274240.0 181440.0 False True 179289.50018876896 209860.06072345714 242429.56082996714 223889.1976237538 161751.32752741207 147561.8855159421 168047.66706068977 165674.94825939738 206657.22662773015 169860.34386140085 1.05551122830095 1.2354859053782115 1.427228718127286 1.318078090118776 0.952260685751317 0.8687247544744559 0.9893284285224917 0.9753597837679018 1.2166302147389627 1.0 17.373989550076114 3.2372981649693315 24.99791079025993 0.9908194537311513 1.2694019144874003 0.5294307052261147 0.11911681024646784 25.710691026166046 509102.9632000147 0.03521660107265024 0.04435676620731899 1727.0231731946253 -3.2372981649693315 0.27858246075624893 QGFGELLQAVPLADSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGFGELLQAVPLADSFR 17 0 P27695;G3V3M6;G3V5Q1 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 183.6 1.5875e-09 324240000.0 327020.0 377650.0 358950.0 367600.0 332620.0 338270.0 387900.0 340210.0 392630.0 345000.0 False True 325259.36065533746 390219.8519557545 409487.03995066916 414138.1223091232 374977.18540680077 314886.1911019285 369135.79507809936 365598.1977513758 295871.5974724536 322981.80463063944 1.007051654279109 1.2081790564084816 1.267833153694081 1.2822336006906945 1.1609854797722212 0.9749347690407233 1.1428996611751594 1.1319467304651178 0.9160627417102057 1.0 18.30109336657414 2.946051329570095 7.9075250141224105 1.0585294329108195 1.2009298634731818 0.37414223140825453 0.09589267911843272 0.3702427621193401 49.77177614689471 0.029974965117021912 0.03201112343879335 883.1842784208702 -2.946051329570095 0.1424004305623623 QGGDVLQNEEGETTSHLMGMFYR ddPTM_BT-474_Trastuzumab_2h_R1 5 QGGDVLQNEEGETTSHLMGMFYR 23 0 P39748;F5H1Y3 P39748 FEN1 Flap endonuclease 1 0 ;;;; 336.66 9.225399999999995e-87 1489691000.0 718721.0 815021.0 786091.0 849261.0 806444.0 926684.0 892614.0 766258.0 894525.0 883781.0 False True 714851.4859934098 842148.481294402 896765.7799745419 956777.3555233078 909139.8632319226 862624.5162594963 849434.8507033838 823440.062939283 674081.2997708941 827377.3399370183 0.8639969352409697 1.0178529682218613 1.0838655311043515 1.1563978239918193 1.0988213229300288 1.0426010897581037 1.0266595538718095 0.9952412559449174 0.8147205237965625 1.0 19.658185920276527 1.4929422394511278 3.838409127189545 0.905061452409675 1.0477585594518588 0.28238149335015994 0.08297856074302135 0.23750378975852732 7.2563032188316186 0.057161041921415794 0.022029304056797965 31.113025107753323 -1.4929422394511278 0.14269710704218386 QGGGGGGGSVPGIER ddPTM_BT-474_Trastuzumab_2h_R1 1 QGGGGGGGSVPGIER 15 0 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 72.327 0.054904 0.0 52019.0 82022.0 49502.0 52657.0 46693.0 55672.0 66351.0 59255.0 61919.0 69987.0 False True 51738.93548385425 84752.0526866539 56471.45132090275 59323.37080095613 52639.076778906165 51823.525677791644 63141.34864456549 63676.90899079319 46659.892122091616 65520.36974111473 0.7896618362852051 1.2935221980817224 0.8618915238731676 0.9054187428330411 0.8034001790114225 0.7909528881255966 0.9636903591058892 0.9718643109371108 0.7121432969083512 1.0 15.999655877892344 QGGLGPMNIPLVSDPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGGLGPMNIPLVSDPKR 17 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 ; 174.52 2.1529000000000003e-09 964750000.0 734180.0 852470.0 845130.0 703610.0 828780.0 935510.0 914920.0 823770.0 1135260.0 1010600.0 False True 730227.2564550661 880843.948621003 964116.9579983539 792686.9538572404 934320.2204360784 870840.3956536658 870661.8242661888 885243.9004193014 855490.3847046272 946102.6427818114 0.7718266744377649 0.9310236635964473 1.0190405505723725 0.8378445614806812 0.9875463593346602 0.9204502305301112 0.9202614863290043 0.9356742708343272 0.904225763696465 1.0 19.851637184639202 QGGS(ph)PDEPDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 QGGSPDEPDSK 11 0 Q9ULX6;Q9ULX6-2;V9GZ50 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 1 QGGS(1)PDEPDSK;QGGS(1)PDEPDSK 216.83 1.2369000000000006e-11 645220000.0 1220130.0 922100.0 811810.0 766550.0 852160.0 993820.0 1165500.0 1044310.0 1504340.0 1091640.0 True False 1213560.955649188 952791.5410787781 926105.7916209864 863595.1514038579 960677.5248519614 925119.5626006405 1109120.3123576299 1122241.7150987303 1133615.5641232461 1021970.6005999764 1.1874714937364472 0.9323081706258627 0.9061961186332466 0.845029349079964 0.9400246193853021 0.9052310918313337 1.0852761436644947 1.0981154589377493 1.1092447898772484 1.0 19.962922263663614 2.2290768679001696 24.939932706908326 1.0832740316249256 0.9441973090999938 0.2981672391296958 0.0894265966618621 216.64180874297662 569710.391499314 0.033479304832787916 0.02504942642241957 169.46377161057796 -2.2290768679001696 -0.13907672252493186 QGGSQPSSFS(ph)PGQSQVTPQDQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QGGSQPSSFSPGQSQVTPQDQEK 23 0 Q9H0L4 Q9H0L4 CSTF2T Cleavage stimulation factor subunit 2 tau variant 1 QGGSQPSS(0.012)FS(0.988)PGQSQVTPQDQEK;QGGSQPSSFS(1)PGQSQVTPQDQEK 231.45 1.4297e-33 1288670000.0 917240.0 707500.0 735370.0 705710.0 727730.0 1034210.0 952570.0 926010.0 1118000.0 972670.0 True False 912301.6817549445 731048.7098072182 838903.7040493767 795052.8136419243 820402.1019063534 962717.496968474 906490.5499292224 995113.5683835014 842483.8804324747 910593.3678553173 1.0018760447417387 0.8028267453001846 0.9212714847959103 0.8731150936388644 0.9009533023929356 1.0572419380078755 0.9954943467952572 1.0928188184889276 0.9252031808849452 1.0 19.7964474262197 2.750529753632512 22.8214438720627 1.024309075725862 0.8942967065236556 0.45512361318472616 0.06179161377430218 178.60983957483842 340552.78165815305 0.017705924171102345 0.018615575741152145 563.0276892523378 -2.750529753632512 -0.13001236920220638 QGIAVMTPTVPGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 QGIAVMTPTVPGSPK 15 0 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;E7EX50;H0Y7S5;Q9UPX8-2 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 QGIAVMTPT(0.002)VPGS(0.998)PK;QGIAVMTPT(0.004)VPGS(0.996)PK;QGIAVMTPTVPGS(1)PK;QGIAVMTPTVPGS(1)PK 236.27 1.1070999999999999e-17 405430000.0 1599820.0 1124110.0 1056550.0 1027030.0 974790.0 1512470.0 1450210.0 1287340.0 1977660.0 1481550.0 True False 1591206.7468767134 1161525.3218111543 1205303.0563027721 1157051.8926962423 1098923.7284670055 1407916.5088714163 1380057.801959812 1383407.847780064 1490292.1922863056 1386996.2105812305 1.1472322236626062 0.8374394341887992 0.8690024147922376 0.8342141700671061 0.7923047807077237 1.0150831690314561 0.9949975287830737 0.9974128532047951 1.0744745954726065 1.0 20.403532415397272 2.702710184165427 23.380569921757473 1.0128852300815243 0.8878463940830261 0.292326512819151 0.09311555241134836 342.78702427038536 223554.47769790448 0.029836094949082317 0.028131209314970106 504.32463649381145 -2.702710184165427 -0.1250388359984982 QGIETPEDQNDLRK ddPTM_BT-474_Trastuzumab_2h_R1 3 QGIETPEDQNDLRK 14 1 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 0 ;; 210.1 9.1683e-09 4011200000.0 1389660.0 1231200.0 1186740.0 1159380.0 1183160.0 1374410.0 1386910.0 1281670.0 1732710.0 1508310.0 False True 1382178.2249657419 1272179.7477238846 1353822.6766710056 1306157.389126091 1333828.412861254 1279400.2717131348 1319819.8647892936 1377314.72358839 1305706.8376244677 1412048.3644708423 0.9788462348339647 0.9009462988193236 0.9587650895926242 0.9250089600263562 0.9446053311078331 0.9060598092138178 0.9346846028775291 0.9754019467346867 0.924689883489773 1.0 20.429358072938424 -0.06434907491584532 0.5459644272964437 1.0052341011951216 0.9358329594426834 0.3307011616000146 0.025427200847799713 5.13855779426089 1.7422643551142767 0.08458478033831504 0.0108063896098605 0.8622851861363316 0.06434907491584532 -0.06940114175243817 QGLAETAS(ph)PVAVSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGLAETASPVAVSLR 15 0 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 QGLAET(0.234)AS(0.766)PVAVSLR;QGLAET(0.226)AS(0.774)PVAVSLR;QGLAET(0.026)AS(0.974)PVAVSLR;QGLAET(0.001)AS(0.999)PVAVSLR 250.38 8.812799999999998e-19 1270560000.0 1141270.0 1265380.0 1148800.0 1113040.0 1140140.0 1362560.0 1277660.0 1107950.0 1182230.0 1343630.0 True False 1135125.5291270164 1307497.4083616363 1310541.0544513958 1253950.7498774389 1285330.070860773 1268369.4343212328 1215854.7046648213 1190630.8550561036 890885.2575703809 1257878.3830604823 0.9024127804511578 1.039446599901358 1.041866266325988 0.9968775731931355 1.0218238012275076 1.008340274705433 0.9665916204924236 0.9465389270457434 0.7082443498256259 1.0 20.262561012497518 1.4939371841650544 4.311791937859132 0.845825537401825 0.9996913091526256 0.3440483340605629 0.07638570152625944 0.16494889561363493 6.506834340378139 0.04512777090328969 0.018083997593184714 31.184385042537105 -1.4939371841650544 0.15386577175080063 QGLYELSASNFELHVAQGDHFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 QGLYELSASNFELHVAQGDHFIK 23 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 338.56 4.1402e-87 437470000.0 192780.0 232680.0 212390.0 198430.0 175100.0 239290.0 202030.0 140050.0 286430.0 210060.0 False True 191742.09389987154 240424.61314196966 242292.6658730261 223551.2176545139 197397.9471009888 222748.44552807076 192257.03707045244 150501.24215949036 215843.16446536148 196653.79095858627 0.9750236339977342 1.2225780747476218 1.232077269865858 1.1367755310732455 1.0037840925352883 1.132693371647129 0.9776421605365353 0.7653106580141378 1.097579474126773 1.0 17.585298472283547 2.1404963576047584 4.443485746000477 0.915981737562474 1.1229474276607747 0.3084847329524375 0.11029550448229727 0.20716109016079323 7.235481070834636 0.04334469142123029 0.031416102561691264 138.19628154342246 -2.1404963576047584 0.20696569009830068 QGPPCS(ph)DS(ph)EEEVER ddPTM_BT-474_Trastuzumab_2h_R1 2 QGPPCSDSEEEVER 14 0 O43159;E9PPY3 O43159 RRP8 Ribosomal RNA-processing protein 8 2 QGPPCS(1)DS(1)EEEVER;QGPPCS(1)DS(1)EEEVER 162.77 2.9388000000000003e-07 486700000.0 679590.0 844480.0 721170.0 767670.0 810920.0 848110.0 689480.0 675240.0 846210.0 783280.0 True False 675931.1629495469 872588.00630106 822704.467477989 864856.9432890211 914185.8553005934 789482.151936196 656127.2183306215 725629.8375992446 637672.8841330635 733290.3998002537 0.921778279292445 1.1899624030789855 1.1219354129033894 1.1794194271800174 1.2466900637859368 1.0766296028848172 0.8947713191245225 0.9895531671993854 0.8696048445564866 1.0 19.48402512625046 2.392456945160162 5.009641066976996 0.9428799287284487 1.1395121223801716 0.5204382358312241 0.0876320884841078 0.15913542856555463 6.939137463842171 0.030129430033475877 0.025054864430179645 246.86353586036836 -2.392456945160162 0.1966321936517229 QGPPHINHDDPSLVPNVPYFDLPAGLMAPLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 QGPPHINHDDPSLVPNVPYFDLPAGLMAPLVK 32 0 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ; 176.97 1.2382999999999998e-19 1270610000.0 715130.0 700640.0 644250.0 717760.0 654430.0 797330.0 801450.0 261833.0 896610.0 639440.0 False True 711279.8195384118 723960.3788541768 734954.8000786141 808628.3424064094 737767.7813894914 742212.4538129332 762680.8016636834 281372.3080210341 675652.4794584638 598630.391747873 1.1881785979185362 1.2093612165937098 1.2277271755827548 1.3507973426564381 1.23242620414805 1.2398509398191948 1.274042902226895 0.4700267676011019 1.1286638446232287 1.0 19.191305999031123 1.7709656059467718 24.999999999998106 0.8138262427251081 1.247204658763282 0.522805147708469 0.1640125938522258 18.679384935829766 14418.034830562703 0.07032750555554025 0.0390131712776073 59.01543409098328 -1.7709656059467718 0.43337841603817384 QGPPS(ph)PCQQLVLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 QGPPSPCQQLVLTK 14 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 QGPPS(1)PCQQLVLTK 149.95 7.7039e-06 309290000.0 57763.0 68090.0 69967.0 57098.0 66357.0 68512.0 70094.0 54367.0 67637.0 63145.0 True False 57452.01042607263 70356.33448872587 79817.74543593389 64326.60094561013 74807.17062124673 63775.92669990042 66703.28543491695 58424.14161003216 50968.767639366175 59115.03203884567 0.9718680417583089 1.1901597962848658 1.3502106432672498 1.0881597916303223 1.2654509021003226 1.0788444918374058 1.1283641932408137 0.9883127792545302 0.8621963971172947 1.0 15.851237411650628 1.7593842987577548 1.801351980030054 0.9254428241633537 1.170659229220863 0.454171927129043 0.10299824726578818 0.2826511374982022 1.8134516636347984 0.07231641075661235 0.029716761141217168 57.46247115584586 -1.7593842987577548 0.2452164050575094 QGPVS(ph)PGPAPPPSFIMSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 QGPVSPGPAPPPSFIMSYK 19 0 P29375 P29375 KDM5A Lysine-specific demethylase 5A 1 QGPVS(1)PGPAPPPSFIMSYK 152.06 4.6155e-10 0.0 68485.0 74501.0 68501.0 67278.0 68703.0 83201.0 74625.0 84059.0 85706.0 77186.0 True False 68116.2843693988 76980.7207481944 78145.3453786344 75795.3879018312 77451.91981541531 77449.51070408727 71015.10365481616 90331.90942295309 64584.904701561456 72259.9233977408 0.9426564707862456 1.0653307826589975 1.0814479410460822 1.0489270447275472 1.0718516734247858 1.0718183339024785 0.9827730270889886 1.2500969441351124 0.8937859558204388 1.0 16.1409081049293 4.7383434902332535 7.525746956340239 1.0668906009857362 0.9413238488836024 0.10275471032302796 0.08698474476980579 0.18405104013577978 102.78397124825933 0.019763009435895526 0.1179834318334948 54744.87774299713 -4.7383434902332535 -0.12556675210213375 QGPVSQSATQQPVTADKQQGHEPVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGPVSQSATQQPVTADKQQGHEPVSPR 27 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 QGPVSQSATQQPVT(0.073)ADKQQGHEPVS(0.927)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR 258.02 3.6674e-53 6971600000.0 2882380.0 3115580.0 3292690.0 3639470.0 3399040.0 4032480.0 4151190.0 3220400.0 4937330.0 4471000.0 True False 2866861.586342521 3219280.196892119 3756272.131425464 4100226.5288367374 3831887.5963115105 3753724.1490368797 3950381.08061422 3460722.600859853 3720591.1783324443 4185656.952184323 0.6849251190655802 0.7691218448306205 0.8974151905748556 0.979589721679651 0.9154805661538519 0.896806449242804 0.9437899774735905 0.8268051205328337 0.8888906140267467 1.0 21.997022645451253 4.36904461282925 2.7773279545854077 0.9117336674293418 0.6937561593744639 0.7403252691740114 0.046561491737432896 0.14384405691979146 2.102846108687762 0.012352074394295816 0.04879822317894998 23390.775076707487 -4.36904461282925 -0.21797750805487792 QGQEHIGSSCSFAEQALR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGQEHIGSSCSFAEQALR 18 0 O75382;O75382-2;O75382-4;A0A1W2PPI7;E9PMK8 O75382 TRIM3 Tripartite motif-containing protein 3 0 ; 180.62 7.7634e-14 419110000.0 358320.0 287020.0 342620.0 346490.0 352640.0 364380.0 306450.0 296200.0 361080.0 341690.0 False True 356390.84493309486 296573.2871927463 390857.9178935733 390355.5984735802 397546.6137389643 339191.2682582579 291625.8427473152 318303.94807312347 272096.67222411296 319883.0516644732 1.1141285637943545 0.927130354826749 1.221877545120915 1.2203072230379557 1.242787361413423 1.0603602363217328 0.9116639385233916 0.9950634971651888 0.8506129687343249 1.0 18.287185030731116 2.4273031524811755 4.643390278649131 0.9455043025883649 1.1427826182105965 0.5230833804882805 0.09245863236823308 0.1794382436783582 8.375782094020375 0.03472793545181779 0.029187793129441246 267.48729104107787 -2.4273031524811755 0.19727831562223153 QGQQQAGGDGKTEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 QGQQQAGGDGKTEQK 15 1 Q00839-2;A0A1W2PPS1;A0A1W2PP35 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;; 196.95 7.9087e-09 684144000.0 452157.0 360974.0 364747.0 407346.0 380082.0 430462.0 504689.0 444497.0 739488.0 520192.0 False True 449722.63695136533 372988.80137660884 416100.20716224203 458915.96183387365 428483.1897774875 400705.17513855296 480275.2649707942 477667.6232500312 557251.0910315297 486992.90120122297 0.9234685676979555 0.7659019268178034 0.8544276644195098 0.9423463066954479 0.8798551040899885 0.8228152282100384 0.9862058846979926 0.980851306193191 1.14426943320325 1.0 18.89354121701869 1.8578954786661264 1.7067370198205813 1.0611383896183115 0.8643415409815841 0.6222759013749213 0.0624934868462108 0.22591110566616232 1.2428010308610835 0.04198600250481109 0.01847801983143244 72.09339516579072 -1.8578954786661264 -0.19679684863672742 QGQSQAASSSSVTS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 4 QGQSQAASSSSVTSPIK 17 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 QGQSQAASSSSVT(0.002)S(0.998)PIK;QGQSQAASSSSVT(0.001)S(0.999)PIK;QGQSQAASSSSVT(0.002)S(0.998)PIK;QGQSQAASSSSVT(0.003)S(0.997)PIK 324.9 4.2702e-59 1963320000.0 3434290.0 2593980.0 2506440.0 2478330.0 2425220.0 3542750.0 3446860.0 3131170.0 4112810.0 3479930.0 True False 3415800.1642254908 2680319.056205974 2859324.965632974 2792086.3238911023 2734057.3915948607 3297848.031236464 3280122.2135161045 3364833.805159089 3099263.084330493 3257837.8880820354 1.0484868435968897 0.8227294138886512 0.8776756437430732 0.8570366051991827 0.8392245057977589 1.012281195237122 1.0068402192495798 1.0328426154869372 0.9513251398015697 1.0 21.635483385624998 2.7276370356939292 24.81855477059615 1.0056796951770806 0.8829389278608952 0.4518657174868782 0.06116396936716907 542.6086177017909 1232813.6407876608 0.018964645859618757 0.018046068566582037 534.1177805605773 -2.7276370356939292 -0.12274076731618533 QGRPTLQEGPGLQQKPRPEAEPPS(ph)PPSGDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGRPTLQEGPGLQQKPRPEAEPPSPPSGDLR 31 3 A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7;F8WDP1;B0QYI1;Q8WUA7-2 A0A0A0MRY0 TBC1D22A TBC1 domain family member 22A 1 QGRPTLQEGPGLQQKPRPEAEPPS(0.979)PPS(0.021)GDLR;QGRPTLQEGPGLQQKPRPEAEPPS(0.991)PPS(0.009)GDLR;QGRPTLQEGPGLQQKPRPEAEPPS(0.943)PPS(0.057)GDLR;QGRPTLQEGPGLQQKPRPEAEPPS(0.998)PPS(0.002)GDLR 157.47 4.5162e-09 1605090000.0 889729.0 857482.0 819021.0 845415.0 789483.0 976775.0 978857.0 848012.0 991711.0 948326.0 True False 884938.797922185 886022.7700111842 934332.0377418511 952444.4523176476 890018.980417646 909252.8433310274 931505.9473131293 911294.961557684 747317.1122965746 887803.0227772631 0.9967738059213652 0.9979947660456147 1.0524091648382023 1.0728105535596968 1.0024960014592548 1.0241605626512333 1.049225924461434 1.0264607555704557 0.8417600448788578 1.0 19.759880095172743 1.3110144856928285 12.020009110171243 0.9209948721280184 1.0291463316911693 0.5019884751818673 0.042579444633784366 0.4071241457199583 65.87556757501292 0.02633537339066932 0.00962859730178609 20.465128960832953 -1.3110144856928285 0.10815145956315086 QGRPVVICDKEDTETIK ddPTM_BT-474_Trastuzumab_2h_R1 2 QGRPVVICDKEDTETIK 17 2 Q06210-2;Q06210;A0A6I8PRN4 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ; 138.66 1.6375e-06 944660000.0 652330.0 526650.0 492340.0 456320.0 481150.0 624240.0 632740.0 577140.0 830190.0 651930.0 False True 648817.927760677 544179.2268833523 561657.192504005 514090.0652124564 542421.6005005186 581087.7581029 602131.9488984699 620209.1174575373 625600.7984760616 610323.2692546467 1.0630725722665655 0.8916245771653563 0.9202618035355676 0.8423242093330072 0.8887447486033875 0.952098318015221 0.9865787185761729 1.0161977245517178 1.0250318642447835 1.0 19.21921407025254 2.2683533365263595 2.3265898644260075 1.0130939568836492 0.9155955764796758 0.360632135133641 0.05395975338629454 0.31037085715343843 3.4394800972822077 0.023924786664405284 0.016896823156647416 185.50402470386223 -2.2683533365263595 -0.0974983804039734 QGS(ph)FTIEKPSPNIPIELIPHINK ddPTM_BT-474_Trastuzumab_2h_R1 3 QGSFTIEKPSPNIPIELIPHINK 23 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 QGS(0.995)FT(0.005)IEKPSPNIPIELIPHINK;QGS(0.971)FT(0.029)IEKPSPNIPIELIPHINK;QGS(0.979)FT(0.021)IEKPSPNIPIELIPHINK 243.75 1.6787e-37 8921350000.0 4539580.0 2961400.0 2839440.0 2763590.0 2722000.0 3956450.0 4071250.0 3806180.0 5920760.0 4182970.0 True False 4515139.405674757 3059968.4087958937 3239208.4711450827 3113460.2106427345 3068630.565441986 3682949.9239815115 3874308.0838146717 4090216.4789904244 4461668.0321193095 3916009.27337921 1.1529950749525537 0.7813996840092721 0.827170786638587 0.7950594580579381 0.7836116697430591 0.9404854960426111 0.9893511004051956 1.0444859022156725 1.1393405175134426 1.0 21.90095275067088 2.191667438162575 1.8932930754658854 1.0635982036357485 0.8581355817212627 0.37407700951714484 0.10764206742949459 0.34026207508850626 2.4205811923535365 0.05479334244609046 0.0336084865503168 155.4774603994709 -2.191667438162575 -0.20546262191448583 QGSGLFSNVLISGHGPGAHPQLPLT(ph)PLTPTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGSGLFSNVLISGHGPGAHPQLPLTPLTPTPR 32 0 Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5;Q96PN7 Q05GC8;Q96PN7 BCAR2;TRERF1 Transcriptional-regulating factor 1 1 QGSGLFSNVLISGHGPGAHPQLPLT(0.927)PLT(0.061)PT(0.012)PR;QGSGLFSNVLISGHGPGAHPQLPLT(0.983)PLT(0.014)PT(0.003)PR 181.25 3.0730999999999998e-19 601280000.0 268820.0 331750.0 336620.0 366400.0 329380.0 382210.0 321340.0 173642.0 359870.0 318830.0 True False 267372.70298870973 342792.09820289037 384013.170046509 412786.2024321617 371324.59061178594 355788.72232556314 305795.55656199134 186600.0477762099 271184.86051094386 298481.9964359041 0.8957749753128752 1.1484515056053017 1.2865538780626986 1.3829517604449661 1.2440435103144454 1.1919939111033286 1.0245025167796267 0.6251634939606158 0.9085467926008662 1.0 18.187284389391042 2.009144909149745 4.333704265777756 0.8049061601702235 1.201776835100624 0.516768474084411 0.14867525507255325 0.142636614524168 6.479244630974029 0.06542142018768726 0.04273491245622353 102.1280192980451 -2.009144909149745 0.3968706749304004 QGSGRES(ph)PSLASR ddPTM_BT-474_Trastuzumab_2h_R1 6 QGSGRESPSLASR 13 1 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9 Q8WWM7 ATXN2L Ataxin-2-like protein 1 QGSGRES(0.998)PS(0.002)LASR;QGS(0.041)GRES(0.932)PS(0.027)LASR;QGSGRES(0.999)PS(0.001)LASR;QGSGRES(0.998)PS(0.002)LASR;QGS(0.015)GRES(0.974)PS(0.011)LASR;QGS(0.005)GRES(0.994)PS(0.001)LASR 181.86 7.0799e-06 10364973000.0 3998082.0 4399364.0 4304771.0 4282714.0 4539810.0 4624660.0 4702746.0 4500551.0 4828401.0 4633647.0 True False 3976556.770740666 4545794.171268307 4910845.339059703 4824905.153283438 5117927.893937974 4304968.1394786555 4475256.209745684 4836404.9689549105 3638506.2708086246 4337923.6813952215 0.9166958809800158 1.047919351547058 1.1320727840652582 1.1122614198992977 1.1798104968715994 0.9924029226106702 1.0316585856361336 1.1149124152869745 0.8387667783123283 1.0 22.04857324072044 1.2471161191101636 24.999655622982893 0.9193833725446263 1.070860163729018 0.3472806128638961 0.0801593101537784 173.69038455237305 507543.4644872092 0.055039895818737555 0.01939275908845056 17.665100766473817 -1.2471161191101636 0.15147679118439172 QGSGRESPS(ph)LASR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGSGRESPSLASR 13 1 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;Q8WWM7-7;H3BSK9 Q8WWM7 ATXN2L Ataxin-2-like protein 1 QGS(0.033)GRES(0.156)PS(0.801)LAS(0.01)R 146.1 0.00011082 1182300000.0 599910.0 621050.0 620050.0 613680.0 620570.0 660290.0 705090.0 646040.0 708430.0 673470.0 True False 596680.1512162675 641721.2738173472 707347.6504287851 691371.8250779719 699595.9110934358 614645.7064554723 670982.1029946313 694250.7853246488 533846.9189756522 630488.5680133244 0.9463774309126848 1.017815875455787 1.1219040063765857 1.096565203801381 1.1096091929118863 0.9748720875181399 1.0642256450563448 1.1011314408320516 0.8467194269006479 1.0 19.266110686354292 1.2474593191579753 24.999957057383497 0.9233596964049307 1.058322024629851 0.38798550213646066 0.06548802584199274 163.0589938240535 458105.7535231239 0.044935768317926325 0.01587613080134996 17.67906608220602 -1.2474593191579753 0.13496232822492038 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK 35 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 209.18 3.6376e-28 464470000.0 136507.0 265913.0 214381.0 230684.0 224364.0 158560.0 151818.0 115764.0 67767.0 150737.0 False True 135772.06147935352 274763.7534571971 244563.98136694366 259888.57074743658 252935.42549038373 147599.12041009185 144473.9833389196 124402.89751768099 51066.73088127689 141116.8356075616 0.9621251843892559 1.9470657223444299 1.7330602710442222 1.8416553179393338 1.7923830590545813 1.045935587873846 1.0237898456049146 0.8815595742497998 0.3618755385309996 1.0 17.106530589931396 2.550974841541949 2.427521612035828 0.815239651254135 1.6881535914227934 0.6290838217487081 0.30605635854730995 0.1864353558344814 2.182250822237267 0.1122454458867359 0.09917412680088486 355.61071762461205 -2.550974841541949 0.8729139401686584 QGSITS(ph)PQANEQSVT(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 3 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 QGSIT(0.002)S(0.998)PQANEQSVT(1)PQR;QGSIT(0.003)S(0.997)PQANEQS(0.002)VT(0.998)PQR;QGSIT(0.039)S(0.961)PQANEQSVT(1)PQR 378.83 2.1399e-107 856600000.0 1427360.0 1157940.0 1234070.0 1174680.0 1221290.0 1389550.0 1292840.0 1229280.0 1159130.0 1216380.0 True False 1419675.252354603 1196481.3329104881 1407816.3292712702 1323394.367557346 1376814.0423470377 1293493.67914886 1230300.3900715923 1321015.1157573597 873477.9430462394 1138749.587004688 1.246696612280535 1.050697490093195 1.2362826255545105 1.162146957206227 1.2090577753521237 1.135889482560607 1.0803959045181435 1.1600576025077594 0.7670500635208076 1.0 20.11901910012305 1.253822047043634 24.99884970213881 0.8835250742325389 1.1562009176446757 0.6640841776724653 0.07865712032484586 108.27240877648147 177356.22473787062 0.048305809413171634 0.01749431732858585 17.93998382098515 -1.253822047043634 0.2726758434121368 QGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 QGSIT(0.122)S(0.877)PQANEQSVT(1)PQRR 177.29 3.5033e-14 1212200000.0 648420.0 688480.0 681350.0 699920.0 637330.0 724330.0 777570.0 678780.0 741750.0 753250.0 True False 644928.9787662352 711395.640605052 777278.1575996333 788529.8002355853 718490.1977491326 674258.7719894167 739955.9684941424 729434.0103750005 558955.6514407774 705176.9401102306 0.9145633415996591 1.008818638473699 1.1022455690030535 1.1182013412297989 1.0188793150791644 0.9561554464387606 1.0493195769823036 1.034398558553231 0.7926459582660255 1.0 19.427625772503074 1.2717156125212121 24.976947280951016 0.8963229144073918 1.0293007714742621 0.3284003544666746 0.0736151476066162 173.3468700158494 130588.98504227608 0.0483891052236399 0.01766809550413725 18.694575693561788 -1.2717156125212121 0.13297785706687038 QGSITS(ph)PQANEQSVTPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGSIT(0.002)S(0.998)PQANEQSVTPQR;QGSIT(0.002)S(0.998)PQANEQSVTPQR;QGSIT(0.022)S(0.978)PQANEQSVTPQR;QGSIT(0.226)S(0.774)PQANEQSVTPQR 403.03 4.270599999999998e-147 2445330000.0 1735180.0 1751810.0 1845920.0 1714430.0 1894910.0 2018960.0 1928110.0 1701750.0 1602120.0 1817870.0 True False 1725837.9836766208 1810117.9368584943 2105809.4909757324 1931476.6622155316 2136215.5564884897 1879394.047320633 1834839.9532045228 1828743.2263114073 1207298.9933081192 1701851.9802431923 1.0140940597137014 1.0636165529506456 1.2373634813262757 1.1349263535478133 1.2552299384951373 1.1043228607061761 1.0781430902952716 1.0745606830331287 0.7094030546273465 1.0 20.69867413240237 1.3953653344443395 5.391710186743781 0.8561118261336917 1.1279460163616375 0.5553329957039095 0.09566617751816704 0.14260471179534057 6.2400719329027545 0.06489278838548644 0.023505695901281674 24.852228295763805 -1.3953653344443395 0.27183419022794575 QGSITS(ph)PQANEQSVTPQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGSIT(0.064)S(0.936)PQANEQSVTPQRR 192.99 3.8436e-15 313360000.0 50843.0 59557.0 55664.0 52536.0 72834.0 78140.0 61004.0 67449.0 65199.0 68878.0 True False 50569.26693718832 61539.31874203327 63501.007359838586 59187.052213362556 82108.97817906011 72738.36572177461 58053.003462089175 72482.38687908209 49131.58007183988 64482.147070577405 0.7842367110052791 0.9543621225062011 0.9847843200744396 0.9178827768960728 1.2733598664013106 1.1280388297579569 0.9002957578095009 1.1240690667410347 0.7619408208920847 1.0 15.976612161822647 5.021542198130692 1.1414921947342989 1.0304445933459698 0.529056926304696 0.2029558503764063 0.1341574353824583 4.219725492116576 2.9994141493557813 0.03803928544042402 2.943251742273227 105085.35558667507 -5.021542198130692 -0.5013876670412738 QGSITSPQANEQSVT(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGSITSPQANEQSVT(1)PQR;QGSITSPQANEQSVT(1)PQR;QGSITSPQANEQS(0.001)VT(0.999)PQR;QGSITSPQANEQSVT(1)PQR 383.3 2.2975999999999988e-125 2012480000.0 820995.0 740606.0 785664.0 726389.0 765780.0 841443.0 750991.0 721212.0 744920.0 758695.0 True False 816574.8541411206 765256.6230042186 896278.662086092 818349.772921657 863297.5438663348 783276.0259537644 714662.6962657827 775032.5016803293 561344.447416601 710274.4355485307 1.1496610510985041 1.0774097795216666 1.2618765609857745 1.1521599708001062 1.2154422300158212 1.102779414197635 1.006178260820922 1.091173302727399 0.790320500530314 1.0 19.438017034696436 1.8832629280737965 1.1329347470034918 0.9279430860229186 1.168511084143117 0.5798846988738742 0.08138945898067233 0.3472646900400982 0.8214982288916782 0.06349346539715324 0.027274222778311753 76.42983606671069 -1.8832629280737965 0.24056799812019836 QGSITSPQANEQSVT(ph)PQRR ddPTM_BT-474_Trastuzumab_2h_R1 6 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGSITSPQANEQSVT(1)PQRR;QGSIT(0.001)S(0.005)PQANEQS(0.169)VT(0.825)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQS(0.008)VT(0.992)PQRR;QGSITSPQANEQS(0.002)VT(0.998)PQRR 259.44 2.6743999999999998e-31 17045280000.0 1216763.0 1163772.0 1200776.0 1255495.0 1272261.0 1244209.0 1274545.0 1219268.0 1203186.0 1258974.0 True False 1210212.0832030787 1202507.4475049714 1369834.8234679066 1414440.538271196 1434275.8970682535 1158199.7603829468 1212890.3891152772 1310255.9694774544 906676.932166394 1178625.2014581303 1.026799767819211 1.0202627994185898 1.1622310652896461 1.2000766117348654 1.2169058452965762 0.9826701134084743 1.029072166126056 1.1116816167314918 0.7692665412590051 1.0 20.168673588776645 1.2562531155855838 24.996946714474106 0.8846332679428539 1.0950743166242003 0.45275275997444264 0.09193606756481136 186.0226549503268 262824.93640324124 0.06314203851354643 0.022946119807535133 18.040688822567798 -1.2562531155855838 0.2104410486813464 QGSKDPAEGDGAQPEETPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGSKDPAEGDGAQPEETPR 19 1 Q14697-2;E9PKU7;E9PNH1 Q14697-2 GANAB Neutral alpha-glucosidase AB 0 75.22399999999998 0.013408000000000002 473450000.0 150150.0 139250.0 140660.0 144130.0 146370.0 161720.0 160360.0 159910.0 223340.0 167540.0 False True 149341.60908323326 143884.85207159742 160463.70536136275 162376.84322201824 165009.35189704015 150540.6770479319 152602.77416531072 171843.2962065267 168300.8496026737 156847.45376178934 0.9521455752163148 0.9173553578378215 1.0230558514839876 1.0352532943800707 1.0520371733139298 0.9597903787240577 0.972937529461427 1.0956078156519655 1.0730225168862422 1.0 17.259002583311943 4.222852649231419 14.20066585733928 1.0293593213917818 0.9347514275834626 0.4498800038339136 0.04046541272658673 1.2681792435086712 1147.845980556368 0.010968941472296127 0.02426518610123698 16705.237300216693 -4.222852649231419 -0.09460789380831913 QGTEIDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGTEIDGR 8 0 P19338;H7BY16 P19338 NCL Nucleolin 0 ; 115.86 0.010005 0.0 3342300.0 3850700.0 3612600.0 3752100.0 3534900.0 3371700.0 3820700.0 3474800.0 3917200.0 3668800.0 False True 3324305.428164442 3978868.221702697 4121222.678717894 4227115.475288515 3985048.562006197 3138622.315128071 3635878.144508625 3734107.2206768724 2951858.5477907793 3434654.0429822896 0.9678719855225848 1.158448033458377 1.1998945533214347 1.2307252556994461 1.1602474403931533 0.913810321461903 1.0585864250105417 1.0871858341326772 0.8594340247519363 1.0 21.71173335960204 2.760494002707992 24.44039493460201 1.0034941135250248 1.1522572231269708 0.4299682318852355 0.09020798571048042 639.2689578025035 712336.779888914 0.028266292299670967 0.02995553255286332 576.094863052435 -2.760494002707992 0.14876310960194594 QGTQYTFSSIER ddPTM_BT-474_Trastuzumab_2h_R1 1 QGTQYTFSSIER 12 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 236.22 1.057e-15 116630000.0 37801.0 46219.0 45600.0 42443.0 44332.0 46454.0 52034.0 40421.0 44071.0 50568.0 False True 37597.483616085934 47757.37147502448 52020.083637694726 47816.27944822116 49977.417423649546 43242.74432095365 49516.91663081677 43437.42027367907 33210.292571144586 47340.706946557046 0.7941893148855964 1.0088014006410553 1.098844672860932 1.0100457414419475 1.055696474496443 0.9134368096735525 1.0459690998428994 0.917549041308479 0.7015166167382272 1.0 15.530793629784984 1.501176363186912 5.765485902701036 0.8375583659992569 0.9940111070603156 0.21907256297091604 0.10467231570953099 0.17493391126943858 13.175846200049122 0.05778904060540093 0.025391327740820098 31.708548580233252 -1.501176363186912 0.15645274106105866 QGTTPPIWHLTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 QGTTPPIWHLTDK 13 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 144.12 3.9634e-05 1754510000.0 2205900.0 2274300.0 2186400.0 2298900.0 2191700.0 2590800.0 2582600.0 2362400.0 2784900.0 2527200.0 False True 2194023.679498533 2349998.7006566166 2494226.115470522 2589940.504288474 2470800.0037763375 2411704.0940872016 2457669.771509923 2538694.284024134 2098598.7107481216 2365911.932355223 0.927347991907045 0.993273954334063 1.0542345559699529 1.0946901568353113 1.0443330413050076 1.019354973067993 1.0387832860132526 1.073029916839258 0.8870147202220684 1.0 21.17396494176812 4.5927375219621025 3.004537939891512 1.0342383476386545 0.9243730039491238 0.2281956411874676 0.053748389801382794 0.3867096135919841 5.7069482195076215 0.01285587944192896 0.08349701155798601 39150.518846071514 -4.5927375219621025 -0.10986534368953071 QGVLTHGR ddPTM_BT-474_Trastuzumab_2h_R1 7 QGVLTHGR 8 0 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 ;;;;;; 141.48 0.00063284 2449779000.0 2647580.0 2737620.0 2959840.0 2699480.0 2273299.0 2533910.0 2638670.0 2218663.0 3248730.0 2758040.0 False True 2633325.7234537937 2828740.026773763 3376559.744609525 3041233.8912160825 2562790.1527511748 2358746.7658825456 2511027.451401724 2384230.899202433 2448124.022251698 2582019.525923158 1.0198705691477263 1.0955533056096445 1.3077204531992423 1.1778508491831563 0.9925525841385308 0.9135278576327632 0.9725052139193053 0.923397702947266 0.9481431095593331 1.0 21.300068480056805 3.1523460187138745 4.5392593231875615 0.9475683716297659 1.1575213153112445 0.6344544188023122 0.07163095040861621 0.13490145346758858 5.004629461313276 0.022120509040521805 0.027040380421762773 1420.188588599245 -3.1523460187138745 0.20995294368147854 QGWPRPLT(ph)PPAAGGLQNHTVGIIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QGWPRPLTPPAAGGLQNHTVGIIVK 25 1 Q96QT6;C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6-4;K7EPF7 Q96QT6 PHF12 PHD finger protein 12 1 QGWPRPLT(0.999)PPAAGGLQNHT(0.001)VGIIVK 104.09 0.006592100000000001 599010000.0 584680.0 524750.0 499200.0 540750.0 551620.0 642490.0 581300.0 533360.0 629550.0 630130.0 True False 581532.147844055 542215.9865319257 569483.0208758155 609208.8945556532 621865.5372921043 598076.1785587785 553180.2982183535 573162.0315472026 474405.8380378044 589914.5639185654 0.9857904574878955 0.919143244964496 0.9653652506779433 1.032706991515726 1.054162035195913 1.0138352485926077 0.9377295155145842 0.9716017650758062 0.8041941444647799 1.0 19.17014650156183 -0.7896727292829758 4.4155059222553446 1.000000119686786 0.9687332622499408 0.021608360441131236 0.06650484622298414 8497999.22038747 1924593.2083559504 11.460120881402954 0.015688897137496757 0.16230327032450065 0.7896727292829758 -0.03126685743684521 QGYACPYYHNS(ph)KDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QGYACPYYHNSKDR 14 1 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 QGYACPY(0.029)Y(0.182)HNS(0.789)KDR;QGYACPYY(0.005)HNS(0.995)KDR 91.957 0.0031100000000000004 141956000.0 399110.0 300730.0 266300.0 279750.0 259360.0 393750.0 351710.0 312730.0 513300.0 379390.0 True False 396961.23610528914 310739.6162548757 303792.7252789055 315166.3213165861 292387.9586528406 366530.9892878013 334696.4436373253 336067.5006107627 386804.0928676112 355177.0053878796 1.1176434005680578 0.8748866383270647 0.8553276835788998 0.8873500157263873 0.8232175907151739 1.0319671142210411 0.9423370279047542 0.9461972354988242 1.0890459883381034 1.0 18.438178657232037 2.7209325533180357 24.93241448402163 0.9893133723872425 0.905157788475253 0.21288040178329248 0.08457349236387018 1369.8849428425156 1937507.0744093617 0.02733531690983055 0.025825211381488064 525.9355813452169 -2.7209325533180357 -0.08415558391198952 QGYACPYYHNS(ph)KDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 QGYACPYYHNSKDRR 15 2 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 QGYACPY(0.002)Y(0.002)HNS(0.996)KDRR 56.215 0.068951 202290000.0 58276.0 48673.0 49693.0 54778.0 54439.0 64343.0 77208.0 58650.0 81947.0 76300.0 True False 57962.24849107227 50293.05138155015 56689.342460700995 61712.88918348511 61371.4839647671 59895.119857130056 73473.15407679784 63026.760818665454 61752.25988354204 71430.46867628346 0.8114499255738057 0.7040840178366152 0.793629714479574 0.8639575005893135 0.8591779544790223 0.8385094059590932 1.0285968360332571 0.8823512149177843 0.8645086757500893 1.0 16.124251966855777 3.3641962364494167 0.8272285799765317 0.9295088542199462 0.7478850553854299 0.5544751677787194 0.059656435642341736 0.5144531952741908 0.7441959504465376 0.028580542034523405 0.058842908925527564 2313.10973530982 -3.3641962364494167 -0.1816237988345163 QGYGEGFR ddPTM_BT-474_Trastuzumab_2h_R1 4 QGYGEGFR 8 0 Q9Y6B6;Q9H029;Q9NR31;Q9NR31-2;H0Y5E8 Q9Y6B6;Q9NR31 SAR1B;DKFZp434B2017;SAR1A GTP-binding protein SAR1b;GTP-binding protein SAR1a 0 ;;; 133.68 0.0021148000000000004 1437590000.0 2641910.0 3047230.0 2912370.0 3030540.0 2685400.0 3081530.0 2986850.0 2707420.0 3163320.0 3005510.0 False True 2627686.250103794 3148655.2084605675 3322406.3812261615 3414206.0532717374 3027369.772387177 2868511.084241362 2842364.6546249604 2909461.428400192 2383762.172316329 2813695.7786534303 0.9338913858559875 1.1190460718420103 1.1807980117936518 1.213424023725016 1.075940688170633 1.01948160352082 1.010189046089855 1.0340355380540085 0.8471996832070958 1.0 21.424034919805376 2.3052548834132667 1.1811640549535904 0.9604870828527261 1.1154164066688526 0.3671156517273153 0.08294270297341694 0.5459468750415245 1.4894269203433401 0.05455780634971082 0.032970098457951534 201.95512718979793 -2.3052548834132667 0.15492932381612645 QGYVIYR ddPTM_BT-474_Trastuzumab_2h_R1 6 QGYVIYR 7 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ;;;;; 139.92 0.006187300000000001 2138000000.0 2952530.0 2934310.0 2581790.0 2803710.0 2359850.0 2689090.0 2533660.0 2626430.0 3367110.0 2930810.0 False True 2936633.9065369195 3031976.7345221443 2945283.5906790337 3158659.3985291393 2660362.9095732034 2503199.5377369695 2411097.1862788815 2822427.5433413074 2537330.8574624234 2743763.1966073196 1.0702942258894959 1.1050431532397558 1.073446715197906 1.151214289350787 0.9696036862301961 0.9123234617448734 0.8787555679951602 1.0286702390465974 0.9247630628619296 1.0 21.38772454288211 3.154827514931577 6.525746365550448 0.9506958612575191 1.0980785770091717 0.7217033445267698 0.0449885997780273 0.11441877363984183 7.2455767719580235 0.013254412834721226 0.01595057017856984 1428.3265694556076 -3.154827514931577 0.14738271575165252 QHAAVSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHAAVSEK 8 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 0 ; 85.676 0.016574000000000002 87461000.0 163804.0 164685.0 184878.0 164354.0 147461.0 158516.0 191750.0 109401.0 262150.0 191417.0 False True 162922.09746433535 170166.44067081518 210907.215411617 185161.19954840493 166239.2842801766 147558.16202652702 182474.3199438661 117565.05814702161 197546.64513003008 179200.6031796614 0.9091604301186101 0.9495863164043659 1.1769336244932582 1.0332621445630268 0.9276714549532505 0.8234244718394693 1.018268447237996 0.6560528037350088 1.1023771216438119 1.0 17.451215967874973 3.1205969924365524 4.32479695472624 0.8862204596465948 1.0234296387054993 0.08340106924559354 0.1328216522902596 0.3715283183590664 12.242186268312057 0.03888582800722061 0.04726026358837037 1320.070094449782 -3.1205969924365524 0.1372091790589045 QHAHTVLS(ph)SPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHAHTVLSSPPR 12 0 Q6ZNC4 Q6ZNC4 ZNF704 Zinc finger protein 704 1 QHAHTVLS(0.5)S(0.5)PPR 113.59 0.00074057 222720000.0 109230.0 129910.0 132520.0 137720.0 121070.0 150120.0 139580.0 56386.0 156740.0 120150.0 True False 108641.91781659388 134233.9758177465 151177.664115511 155155.3378792501 136487.54686188878 139742.55774446885 132827.9821526195 60593.809642306405 118113.52720839567 112481.9241344097 0.9658611252664275 1.1933826421509675 1.3440174079424712 1.3793801899569926 1.2134176038702333 1.2423556835450664 1.1808829122970672 0.5386981962532944 1.0500667384321816 1.0 16.779333653151113 1.894481051710603 8.32149892178596 0.81997657803738 1.231898711939098 0.487929631058164 0.16479848835940694 0.2189855796029782 15.65758909751632 0.06869290222540647 0.043132836347474966 78.42978991799247 -1.894481051710603 0.41192213390171806 QHEAEEGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHEAEEGVR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 157.38 6.8684e-05 108580000.0 93932.0 101730.0 99292.0 102820.0 94946.0 104810.0 111220.0 45329.0 97801.0 85319.0 False True 93426.28054882637 105116.0215529164 113271.45053846453 115837.00145762789 107036.81031096788 97564.73139620166 105839.86369834034 48711.680155998096 73699.25401625814 79873.86837472912 1.1696726657899672 1.3160251743381632 1.418129018204681 1.4502490465865174 1.3400729486244929 1.2214849910420722 1.32508748921226 0.6098575309695371 0.922695438644555 1.0 16.285435966150786 1.7536894484070318 24.99999999997956 0.8174816891050464 1.3256973605390543 0.7629498050843221 0.12126496652087378 2.1464474447903203 3551.4750445058726 0.05485478917568404 0.030419967796302048 56.71389155199952 -1.7536894484070318 0.5082156714340079 QHEAPSNRPLNELLT(ph)PQGPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHEAPSNRPLNELLTPQGPSPR 22 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 2 QHEAPSNRPLNELLT(1)PQGPS(1)PR 148.35 1.0883e-06 159290000.0 131760.0 216220.0 196250.0 226020.0 226740.0 169790.0 174670.0 125160.0 125050.0 173900.0 True False 131050.61879991215 223416.75199224972 223880.29416442057 254634.10882564707 255613.99500672868 158052.81694266846 166220.54479580195 134500.07474960218 94233.10308415117 162801.55311671962 0.8049715515057536 1.3723256794243994 1.3751729629011027 1.5640766562164714 1.5700955556822467 0.9708311371535469 1.0210009770400108 0.8261596537299195 0.578821892544178 1.0 17.312754937327835 2.5688662747900857 4.545018411632283 0.8605603323155776 1.352922474362345 0.5045703842803095 0.22830977577662503 0.1915936746694312 6.7881193366682675 0.0787044983674461 0.07300861959908032 370.5666016897853 -2.5688662747900857 0.4923621420467673 QHEAPSNRPLNELLT(ph)PQGPSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QHEAPSNRPLNELLTPQGPSPR 22 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 QHEAPS(0.001)NRPLNELLT(0.997)PQGPS(0.002)PR;QHEAPSNRPLNELLT(0.967)PQGPS(0.033)PR 125.62 3.3857e-05 1076322000.0 390100.0 378940.0 377870.0 355720.0 356670.0 442380.0 447880.0 333700.0 574680.0 432090.0 True False 387999.7449441844 391552.78882593237 431070.81149508123 400754.1155272065 402089.81035128294 411799.31185050774 426214.333332249 358602.3884942655 433057.81431747327 404513.6462691398 0.959175910436485 0.9679594061591089 1.0656520873174 0.9907060471838028 0.9940080243516825 1.0180109265745771 1.053646365859981 0.8865025736503148 1.0705641659103433 1.0 18.625828847234793 4.448371080675561 24.8942816439688 1.002197910595975 0.9613715483743731 0.10620963209256573 0.05019120662259721 425.8688292045816 368752.13346083125 0.012361520788491207 0.03385438070993845 28078.317506063282 -4.448371080675561 -0.040826362221601964 QHEAPSNRPLNELLTPQGPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 QHEAPSNRPLNELLTPQGPSPR 22 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 QHEAPSNRPLNELLTPQGPS(1)PR;QHEAPSNRPLNELLTPQGPS(1)PR 159.86 1.1598e-11 894190000.0 153218.0 206585.0 177642.0 175953.0 218025.0 220925.0 198197.0 68407.0 162681.0 159424.0 True False 152393.09131212017 213461.05684173026 202652.44950805628 198228.6317591325 245789.19141458056 205652.97475151074 188609.4539239343 73511.87770370756 122590.4473637169 149249.4238302467 1.0210631800190333 1.430230357770202 1.3578105985759055 1.3281701642251815 1.6468351106945396 1.3779146979181394 1.2637198126704658 0.49254379559493977 0.8213797026322113 1.0 17.18736583648736 1.8645987054867452 5.766898152107199 0.7339801931879564 1.3699915681143269 0.6700753159274431 0.18512871381643017 0.11850601783742855 4.943754817839319 0.0808030496185616 0.048321178250347666 73.21477051984353 -1.8645987054867452 0.6360113749263705 QHEQPGQGIAPDAVNGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHEQPGQGIAPDAVNGQR 18 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 98.443 0.0012208 129020000.0 86718.0 111390.0 105570.0 135610.0 121720.0 115110.0 115840.0 66083.0 87923.0 101300.0 False True 86251.11992327563 115097.54881332311 120433.33836911034 152778.2120955934 137220.32050903692 107152.71663979377 110236.3766482266 71014.44902267467 66255.55475783945 94834.94727270679 0.9094866650292159 1.2136617578575681 1.269925716548278 1.6109906367772346 1.4469383329169467 1.1298863944286917 1.1624024667956165 0.7488215163811497 0.6986407085493007 1.0 16.533131178822387 1.9204382127358492 2.369759805479629 0.7876095726823251 1.2875314183805002 0.5200132526522576 0.19038193445601725 0.23011545370916722 2.3596550084620485 0.11405245173793138 0.05809538817201347 83.2603462703065 -1.9204382127358492 0.4999218456981751 QHFESK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHFESK 6 0 H0YC70;Q9Y5V0 H0YC70 ZNF706 Zinc finger protein 706 0 97.071 0.041489 190430000.0 603160.0 587710.0 548390.0 484770.0 486120.0 503390.0 585910.0 387510.0 741170.0 569910.0 False True 599912.6535773753 607271.5720718026 625598.5453086713 546141.8322954117 548024.5005410197 468591.8341525992 557567.2949064435 416427.96393590944 558518.5846691753 533537.8558755013 1.1244050388757463 1.1381977218379546 1.1725476241645578 1.0236233966926829 1.0271520464873982 0.8782728891536106 1.0450379270492651 0.7805031252235662 1.046820911615882 1.0 19.025231112021263 3.3311597584510215 1.500330677770622 0.9319177203507854 1.1460798879354281 0.5010277950130083 0.07968766743810789 0.278932702719173 1.2976989168090658 0.02567041922839725 0.04090041996459115 2143.6790243494274 -3.3311597584510215 0.2141621675846428 QHFEWLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHFEWLVK 8 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 77.67699999999998 0.030129000000000006 0.0 376430.0 356810.0 362500.0 352710.0 265850.0 355630.0 380660.0 389380.0 481850.0 385680.0 False True 374403.342705305 368686.2051537999 413536.8490935165 397363.0498358286 299704.42168359744 331046.1351629727 362246.0215375856 418437.51283157675 363104.52395920246 361065.5722027399 1.0369400228916756 1.0211059528732387 1.1453234008733286 1.1005287693635535 0.8300553826143028 0.9168587665209157 1.0032693489097955 1.1588961813191712 1.0056470400764703 1.0 18.461901339530137 -0.3488992487857856 6.8476467979426925 0.9999977136805271 1.0297747179300858 0.002915841569379185 0.09438166120927978 0.0 0.0 0.09919424904651263 0.023380308718498773 0.44781718044816304 0.3488992487857856 0.029777004249558647 QHFISFDTDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QHFISFDTDR 10 0 C9J0K6;P30626-3;P30626-2;P30626 C9J0K6 SRI Sorcin 0 ;;; 147.91 2.6054e-05 3528850000.0 884760.0 995730.0 974640.0 1000180.0 764260.0 868820.0 880550.0 504227.0 1016310.0 774520.0 False True 879996.5504660773 1028872.271118505 1111860.8402772532 1126802.6854492335 861583.9808760806 808760.5183822919 837954.4324723404 541854.9791528258 765854.0183562873 725089.4705000671 1.2136385732634851 1.418959056747756 1.5334119243387223 1.5540188229076335 1.18824505930541 1.11539410139899 1.1556566004115802 0.7472939563984133 1.0562200245827682 1.0 19.467799498092337 2.6400062435702365 1.3325841524920499 0.9348005056793404 1.4301936518023923 0.6733419494591228 0.13518711825508767 0.23803988135191406 0.860733001537237 0.06577843672658966 0.0567534581403839 436.52210779042593 -2.6400062435702365 0.49539314612305196 QHFPATPLLDYALEVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHFPATPLLDYALEVEK 17 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 140.95 6.4196e-07 537050000.0 782240.0 731900.0 668400.0 654030.0 721220.0 798930.0 811500.0 546420.0 1056970.0 747380.0 False True 778028.5067550336 756260.8490571067 762504.9101630508 736830.1309407925 813063.0919941465 743701.8495789273 772244.6447689546 587196.6350645385 796493.9061723738 699681.5685357902 1.1119751351792766 1.080864328954268 1.089788475861569 1.053093527220879 1.1620473206056114 1.0629147358208355 1.1037087147872364 0.8392341051563689 1.1383662825922096 1.0 19.416338962184597 QHGCTANDANTK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHGCTANDANTK 12 0 Q8N6H7;G5E9L0;Q8N6H7-2;E9PIY6;H0YF45;E9PJT7;E9PK28;E9PN48;H0YDX1 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 0 155.86 7.2691e-05 94447000.0 117110.0 117080.0 106060.0 135450.0 129870.0 136210.0 128750.0 94078.0 144810.0 133370.0 False True 116479.4927721443 120976.9370236453 120992.32610995391 152597.9561119988 146408.1747002021 126794.12330385121 122521.87062723716 101098.57807840416 109123.51585458573 124858.21241619838 0.9328941246081216 0.9689145365975979 0.9690377890934555 1.2221699570976847 1.1725954734332553 1.015504874290525 0.9812880407003319 0.8097070759062719 0.8739794823494419 1.0 16.929931190556516 2.0280434223920834 3.268261849576073 0.8761370651604166 1.0531366662757622 0.32365310596890395 0.09659975995913041 0.2699958644587074 5.819591502544833 0.048024334129437636 0.02984123024525799 106.67027688445134 -2.0280434223920834 0.17699960111534563 QHGDVVSAIR ddPTM_BT-474_Trastuzumab_2h_R1 6 QHGDVVSAIR 10 0 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 0 ;;;;; 156.58 1.0688e-05 3307240000.0 558926.0 855643.0 875282.0 869554.0 794041.0 747934.0 828951.0 567042.0 671735.0 665286.0 False True 555916.8045185163 884122.5600078842 998514.0975124725 979639.4472426187 895157.4147002642 696231.0830272568 788851.4732296609 609357.5534209331 506194.9100378436 622826.877899999 0.8925703501957316 1.4195318014998042 1.6031968640775227 1.5728920539615976 1.4372491722234095 1.117856514758574 1.2665662019748587 0.9783738869387255 0.8127377414163526 1.0 19.248471679252493 1.987040753418034 1.2439703390452477 0.8996691140460706 1.395975563183324 0.46028765810399697 0.20117370079799157 0.40507140243473044 1.1606943822840088 0.15361090830006854 0.07084664270063651 97.06010424394726 -1.987040753418034 0.4963064491372533 QHHHLLQSPVSHHEPES(ph)PQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 QHHHLLQSPVSHHEPESPQLR 21 0 Q9Y6D6 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 QHHHLLQSPVSHHEPES(1)PQLR;QHHHLLQSPVSHHEPES(1)PQLR;QHHHLLQSPVSHHEPES(1)PQLR 257.53 7.9316e-37 1009000000.0 413836.0 451880.0 386749.0 510778.0 438265.0 510295.0 485788.0 183134.8 622224.0 262331.0 True False 411607.95295750233 466920.552632771 441199.8975174295 575442.4424287516 494075.4499498277 475019.5077552208 462288.5785496254 196801.24871567168 468885.2325744338 245588.8109871315 1.6760045024163173 1.901228931220474 1.7964983654754032 2.3431134346707023 2.011799511402482 1.934206635253066 1.882368242638907 0.8013445234929037 1.9092288068408894 1.0 17.905885307534586 1.8587380677334016 7.913358943959481 1.232673817201604 1.951211916519709 0.5168928830018642 0.3096034448373806 0.20432328556221555 12.385279346652696 0.12612088532472096 0.07861440018890431 72.23340171444362 -1.8587380677334016 0.718538099318105 QHHHLLQSPVSHHEPESPQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHHHLLQSPVSHHEPESPQLR 21 0 Q9Y6D6 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 142.98 4.9119000000000005e-08 76559000.0 28852.0 40307.0 41067.0 38489.0 34152.0 36486.0 38533.0 24338.0 49735.0 46261.0 False True 28696.664037758546 41648.59412890398 46848.87663923705 43361.70345363391 38501.05476523682 33963.80869880562 36669.01157964531 26154.225145859855 37478.47566485616 43308.58337396532 0.6626091597124224 0.9616706639714465 1.0817457646836808 1.0012265485391176 0.8889936304954617 0.7842281149104209 0.8466915498715817 0.6039039633326428 0.8653821654990015 1.0 15.402365362096228 2.845100808230979 3.2963489709111777 0.781244214419428 0.9408439662357874 0.08149711187054087 0.13870430914417647 0.401954222441401 8.253335072537764 0.045168259479361386 0.04806410700501937 700.004461852411 -2.845100808230979 0.15959975181635933 QHHPPYHQQHHQGPPPGGPGGR ddPTM_BT-474_Trastuzumab_2h_R1 6 QHHPPYHQQHHQGPPPGGPGGR 22 0 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;;;; 189.84 6.922400000000001e-18 18711270000.0 3221873.0 3289249.0 3118352.0 3333415.0 3305069.0 3256783.0 3019580.0 37654.47 2852011.0 663773.0 False True 3204526.7937517385 3398729.664571994 3557388.856398519 3755424.9972172556 3725949.9464712613 3031649.2568525537 2873511.3794842167 40464.437756924395 2149171.104039451 621410.4388553435 5.156860254318502 5.469379740115977 5.724700832112404 6.043388978361644 5.995956478192693 4.878658399168417 4.62417622848002 0.06511708723699765 3.458537175523295 1.0 19.245186951426565 1.8987282905354266 4.92655098197667 1.5137682618886812 5.535725797410882 0.8168657483379445 0.8557266678148242 0.08467457964724642 3.1322632850131558 0.3767076912962563 0.22174694648969778 79.20056696414412 -1.8987282905354266 4.021957535522201 QHIAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHIAEK 6 0 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 0 ; 68.422 0.096181 266710000.0 1563870.0 1418860.0 1391690.0 1318750.0 1242720.0 1200440.0 1532330.0 824070.0 1862530.0 1417450.0 False True 1555450.297682291 1466085.8973810172 1587627.8552136696 1485703.6147855173 1400973.0258214788 1117456.4083318023 1458205.3438309461 885566.2879426721 1403534.4381233426 1326987.1274599996 1.172166832288415 1.104822998688215 1.196415415311952 1.119606651821347 1.0557547973378585 0.8421004131899438 1.0988843174553717 0.6673510764477001 1.0576850438706689 1.0 20.339722945126706 2.987292458862101 2.559894713462765 0.9054959724701942 1.1503782303748677 0.4174475385125499 0.11710542260175726 0.2412584478580613 3.1764736089804115 0.036690997865602336 0.04235166890536298 971.1637398412149 -2.987292458862101 0.24488225790467355 QHIIPLENVTIDSIKDEGDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QHIIPLENVTIDSIKDEGDLR 21 1 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 0 ; 119.79 3.0393e-05 438660000.0 560840.0 432920.0 400490.0 375630.0 346680.0 461840.0 425180.0 210126.0 561290.0 359520.0 False True 557820.499755182 447329.4804943334 456875.51087851694 423184.7194857885 390827.64306665165 429914.08785442036 404612.41905466974 225806.66911820808 422967.60040066566 336575.125799442 1.6573432110594393 1.3290628041267896 1.3574250616213375 1.2573261867781498 1.1611899190064854 1.277319846002515 1.2021459342654148 0.6708952973927179 1.2566811032039935 1.0 18.36056903431379 5.8671853299187635 0.27568390155014316 0.9286494201538216 2.6971076206466837 0.5490233651502455 0.16196330298913386 11.781330011326805 0.45480177770260327 0.20178920749583634 7.874487402550141 736521.3320146678 -5.8671853299187635 1.7684582004928622 QHIPYREDK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHIPYREDK 9 1 P48729-2;A0A5F9W493;U3KPX3;A0A590UJ43;P48729;E7ETM0;P48729-3;D6REM4;Q8N752;U3KQ83 P48729-2 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like 0 ; 72.79 0.027491 905610000.0 1831970.0 1746280.0 1577390.0 1645950.0 1471980.0 1800880.0 1839850.0 704940.0 2172580.0 1405630.0 False True 1822106.8770710034 1804403.8741514487 1799472.8010803333 1854327.1012369422 1659427.9278909978 1676389.4044155313 1750849.4265904645 757546.2024127883 1637176.770080489 1315921.4899796115 1.3846623001036593 1.3712093676495896 1.3674621280850225 1.4091472138399934 1.2610387021772163 1.273928131108722 1.3305120707600815 0.5756773547520114 1.2441295187799197 1.0 20.327641987427857 1.7727822282270222 24.99999999999935 0.8988312179824797 1.3414103866828584 0.569936786499176 0.1590761967832052 20.917252347393315 15287.816804516833 0.06862472552625318 0.03807530004746503 59.26280837986281 -1.7727822282270222 0.4425791687003787 QHLASIYEKEEDWR ddPTM_BT-474_Trastuzumab_2h_R1 2 QHLASIYEKEEDWR 14 1 D6RFN0;Q9BT78;D6RAX7;Q9BT78-2 D6RFN0 COPS4 COP9 signalosome complex subunit 4 0 ; 210.1 3.4356e-09 517050000.0 889310.0 857140.0 854590.0 904240.0 801340.0 1133430.0 1050680.0 324350.0 1289810.0 765720.0 False True 884522.0537716296 885669.3867479287 974908.8437705591 1018716.6912861839 903385.8990857005 1055078.6519072321 999854.5944126248 348554.6440159277 971953.6080685242 716851.0940341265 1.233899286941063 1.235499804797348 1.3599879415461245 1.4210994441722742 1.2602141596825043 1.4718240101576854 1.3947870104876001 0.4862301905049954 1.3558654177380012 1.0 19.45131394453687 1.7765392879404804 24.999999999999613 0.8953209785103916 1.3415601747672377 0.41371006747158434 0.21126735898716145 38.11039824045603 25096.947163175853 0.09167885761580696 0.0509008200106406 59.777711944812886 -1.7765392879404804 0.44623919625684605 QHLEETTQK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHLEETTQK 9 0 P12270 P12270 TPR Nucleoprotein TPR 0 ; 167.93 5.9608e-05 320050000.0 365590.0 370230.0 346390.0 342900.0 352020.0 438320.0 393580.0 197938.0 465390.0 358750.0 False True 363621.7040608679 382552.8817412386 395158.70112414594 386311.10484167136 396847.66041399253 408019.97009429603 374541.0317783925 212709.13866879826 350700.8704065024 335854.2678586727 1.0826770384048825 1.1390442770916838 1.1765778760043284 1.150234318309246 1.1816067217016453 1.2148720714366226 1.1151891389273612 0.6333376080791867 1.0442054902040938 1.0 18.35747583647166 1.9163181042416106 9.353634531125753 0.8562198192917256 1.1588313749621766 0.5441012720291583 0.10767465822192564 0.2597223031194024 27.513708225788474 0.042628552009094184 0.027001071370019142 82.47419860641737 -1.9163181042416106 0.30261155567045095 QHLENDPGSNEDTDIPK ddPTM_BT-474_Trastuzumab_2h_R1 4 QHLENDPGSNEDTDIPK 17 0 O43396;K7ER96;K7EML9 O43396 TXNL1 Thioredoxin-like protein 1 0 ;;; 216.34 5.3256e-15 4089980000.0 3438090.0 2672130.0 2366150.0 2359170.0 2383670.0 3369780.0 2971230.0 974620.0 3631910.0 2278880.0 False True 3419579.705447705 2761070.231713302 2699283.353055513 2657840.680108853 2687216.2453810032 3136835.040208881 2827500.2536991513 1047351.0934200797 2736874.44560064 2133439.9273526715 1.602847899116133 1.2941870058368319 1.2652258535373815 1.245800571196254 1.2595696794310483 1.4703179592693267 1.3253245228271886 0.49092129569343423 1.2828457977707177 1.0 21.024750057538125 1.852747075075355 11.241229820006122 0.8739650301394515 1.3440803672563453 0.46147530060170294 0.20935400456024933 0.37885633924137224 35.16423495407782 0.08292705115758718 0.05292351033708264 71.2437998816055 -1.852747075075355 0.4701153371168938 QHLVEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHLVEVR 7 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8Y5T0 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 95.815 0.013189 158520000.0 182050.0 214350.0 199800.0 215140.0 153400.0 206640.0 196870.0 83158.0 235450.0 190840.0 False True 181069.86302765663 221484.51017268852 227930.10330726762 242376.70194119864 172934.58072696542 192355.46317823778 187346.64598356662 89363.67222776782 177426.50236835977 178660.42781365576 1.013486115775531 1.2396953980413536 1.275772738801457 1.356633390545776 0.9679512292858582 1.0766539940163249 1.0486185904523337 0.500187273261065 0.9930934596967216 1.0 17.44686059611819 1.9553885750924567 8.74007521556273 0.7745101844742278 1.1567613230760339 0.40230567937996053 0.17247629541923587 0.32246772771483456 60.00053756449849 0.07254211364994355 0.04619310444328502 90.23781588174748 -1.9553885750924567 0.38225113860180604 QHMDITGEENPLNK ddPTM_BT-474_Trastuzumab_2h_R1 3 QHMDITGEENPLNK 14 0 Q9H4A4;A6NKB8;C9JMZ3 Q9H4A4 RNPEP Aminopeptidase B 0 ;; 258.09 2.2799e-24 849020000.0 1619250.0 1421750.0 1392900.0 1332610.0 1340340.0 1718380.0 1560130.0 815820.0 1941910.0 1474220.0 False True 1610532.1379155887 1469072.0892839744 1589008.2126961637 1501318.2893644192 1511024.3541824077 1599592.43523142 1484660.5516246338 876700.6310500191 1463352.3007608477 1380134.0174567574 1.166938947627273 1.064441619945799 1.1513434149129296 1.0878061625717872 1.094838859900612 1.1590123966215033 1.0757365102560785 0.6352286226996705 1.0602972481306134 1.0 20.396376935554095 1.9676796396168035 22.412302927644834 0.8573541833579496 1.116930157010081 0.43932706415735 0.10973642356908539 129.62863135966538 89889.25916627787 0.042226974348947 0.02729007821745595 92.82813808630458 -1.9676796396168035 0.25957597365213136 QHMENEMAHYACDCWDAESK ddPTM_BT-474_Trastuzumab_2h_R1 3 QHMENEMAHYACDCWDAESK 20 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;; 168.27 7.2281e-12 991880000.0 444450.0 434168.0 360127.0 408030.0 349827.0 459237.0 386549.0 91694.0 517883.0 276639.0 False True 442057.13058303716 448619.01941990206 410829.75132000144 459686.55616374186 394375.39486292185 427491.02711761766 367850.1481094206 98536.67189269763 390257.67392666556 258983.6621774365 1.7068919593861185 1.7322290357935453 1.5863153214604373 1.7749635336023573 1.5227809798778926 1.6506486298148504 1.4203604390202687 0.38047447110848087 1.5068814404952302 1.0 17.982501563703696 1.9605442629573706 8.90067210813189 0.8940185599314592 1.6507535959175472 0.5807906320870615 0.26388526295474746 0.23936051835476777 51.49622267461457 0.10386046282225277 0.06645854515740808 91.3154498550168 -1.9605442629573706 0.756735035986088 QHPDPDSSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHPDPDSSVK 10 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 109.16 0.002056 224410000.0 372560.0 375700.0 358800.0 348110.0 333270.0 408270.0 432870.0 369610.0 441080.0 383610.0 False True 370554.1783553073 388204.9473845542 409315.92125449225 392180.6903074775 375709.95905394905 380047.2558642041 411930.4243760165 397192.1750415504 332381.7441691914 359127.68137495534 1.0318173662821104 1.0809663735701847 1.1397504076750262 1.0920369290553584 1.0461737664317794 1.058251077748048 1.1470305569286687 1.1059915334870913 0.9255252697219983 1.0 18.454137333908943 1.2445825565751978 24.99999724300741 0.9627626181008374 1.0907114384659529 0.621409280166829 0.03896910977108918 81.63263007003108 338907.51873782603 0.028225239208473727 0.009719052357022518 17.562347113421573 -1.2445825565751978 0.12794882036511546 QHREPS(ph)EQEHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 QHREPSEQEHRR 12 2 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 QHREPS(1)EQEHRR 88.73 0.004664100000000001 3836400.0 1795.7 860.5 1427.2 2252.5 2233.4 994.64 0.0 955.76 1147.0 0.0 True False 1786.0321507210251 889.141222316766 1628.137354555218 2537.6662690459725 2517.810251601076 925.8828779307134 0.0 1027.0836644509418 864.337219012566 0.0 0.0 QHSITK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHSITK 6 0 O60869;O60869-2;O60869-3 O60869 EDF1 Endothelial differentiation-related factor 1 0 ; 81.78399999999998 0.060966 236660000.0 665660.0 596510.0 586550.0 574060.0 581240.0 488460.0 642940.0 403510.0 785550.0 651670.0 False True 662076.1605217784 616364.47475209 669131.1416160059 646735.937140302 655257.4687206098 454693.9099111601 611838.5359306862 433621.96518226253 591961.7283307079 610079.8626772437 1.0852286741876003 1.0103012940752827 1.096792702974369 1.0600840589987657 1.074051954190245 0.7453022755345576 1.002882693498069 0.7107626258624203 0.9703020285458578 1.0 19.21863858587757 2.7603648544663764 24.62550123794203 0.8649433046665144 1.0636974752177 0.4625370780062147 0.09538554671361903 506.9749441754833 572571.8484474618 0.0270783134294396 0.02869726068349615 575.9235724185988 -2.7603648544663764 0.1987541705511856 QHSLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHSLLK 6 0 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841;K7EQJ5;S4R456;K7EJ78 K7EM56 RPS15 40S ribosomal protein S15 0 86.866 0.05309 324350000.0 738970.0 642240.0 681390.0 643710.0 558980.0 679150.0 666500.0 441210.0 975490.0 681730.0 False True 734991.4676272854 663616.570157722 777323.7892519479 725203.6199989262 630162.789665967 632201.9590471366 634258.8487227471 474135.33061898337 735093.5603963105 638221.4077415825 1.1516245909521188 1.039790521139056 1.217953173966061 1.1362884591495293 0.9873733190741254 0.9905684005245979 0.9937912470958042 0.7429010134535663 1.1517845554531319 1.0 19.283697475916195 3.1408844345362184 3.007518986432399 0.9456677896352679 1.1368683619129232 0.341587978875893 0.10362649384458711 0.2572654043493399 4.679029696993964 0.03220086187281418 0.04024469200234603 1383.198261887254 -3.1408844345362184 0.1912005722776553 QHTFVETESVR ddPTM_BT-474_Trastuzumab_2h_R1 4 QHTFVETESVR 11 0 B0YIW6;P48444;Q6P1Q5 B0YIW6 ARCN1 Coatomer subunit delta 0 ;;; 193.81 7.878699999999998e-07 3251900000.0 471176.0 568974.0 517490.0 552425.0 467617.0 496492.0 483608.0 308535.0 546129.0 461223.0 False True 468639.24076857505 587911.9556379538 590348.0938962863 622361.9483585886 527165.2531668935 462170.67665645416 460214.0334780339 331559.4484089851 411542.8257036738 431787.353267123 1.085347306313193 1.3615775246530788 1.3672195107832872 1.4413621511827088 1.2208909065494686 1.0703664041094199 1.0658349069184638 0.7678767011127989 0.9531145889052359 1.0 18.719961462943132 2.4866055544627605 1.5408450491564292 0.8962719740906157 1.3193326823016014 0.6924845515645637 0.11145922689992188 0.20076484619300805 0.9658210225858357 0.053158353453643226 0.040960657443626806 306.6235831760743 -2.4866055544627605 0.42306070821098574 QHTGERPFTCAECGK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHTGERPFTCAECGK 15 1 Q9BWE0;Q9BWE0-4 Q9BWE0 REPIN1 Replication initiator 1 0 105.14 0.00080437 50464000.0 131530.0 135220.0 130890.0 120260.0 116550.0 144640.0 158660.0 74435.0 188640.0 137270.0 False True 130821.85709435679 139720.715957784 149318.17428372506 135484.9036694644 131391.95165402757 134641.3772459365 150985.00965994148 79989.7176732713 142152.1996464956 128509.31107724049 1.0179951631343378 1.0872419654775436 1.1619249456094074 1.0542808340792615 1.0224313752258345 1.0477169017349284 1.1748954872942396 0.6224429732192206 1.1061626465420475 1.0 16.97151336738364 QHVIDGEK ddPTM_BT-474_Trastuzumab_2h_R1 6 QHVIDGEK 8 0 Q9UQ80;Q9UQ80-2;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;;;;; 101.64 0.0052489 5079210000.0 4948240.0 4432950.0 4145750.0 4061250.0 4002910.0 5382800.0 5251030.0 2892330.0 6459450.0 4835480.0 False True 4921599.225641142 4580498.060975138 4729435.564495022 4575403.833590657 4512656.861393593 5010699.705748253 4997017.618017406 3108170.3515541493 4867605.099695491 4526875.526537288 1.0871956157817724 1.0118453741711047 1.0447461028628453 1.010720044491811 0.996859055421263 1.1068781715721379 1.1038557585080633 0.6866038912122818 1.075268155963377 1.0 22.110084207317872 QHVLDMLFSAFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QHVLDMLFSAFEK 13 0 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 0 60.19600000000001 0.093646 58363000.0 205220.0 188960.0 187830.0 168600.0 182390.0 242300.0 219950.0 184400.0 282450.0 233660.0 False True 204115.11832208556 195249.41937126775 214274.8313523728 189944.74271305243 205616.2853897734 225550.37131284893 209310.17820940432 198160.86436422716 212843.9821360938 218747.61875360936 0.9331078412880672 0.8925784906083514 0.9795527492974697 0.8683282761902903 0.9399703940154581 1.031098635944019 0.9568569450128045 0.9058880983176759 0.9730116531043694 1.0 17.738907786554087 2.998086877798014 24.997963001458952 0.9635820351704083 0.9188207480878013 0.27688656681503365 0.040593271884534064 123.02161572466622 1607509.6888038563 0.012218264138070428 0.014398538788049042 995.6045616757503 -2.998086877798014 -0.04476128708260696 QHVPEQHPK ddPTM_BT-474_Trastuzumab_2h_R1 4 QHVPEQHPK 9 0 Q9H3U1;A0A1W2PNX8;Q9H3U1-2 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A 0 ;;; 88.681 0.007297800000000002 283374000.0 610380.0 546620.0 514060.0 542223.0 534919.0 656425.0 611476.0 126168.0 721975.0 443280.0 False True 607093.7818995926 564813.916261232 586435.1797103805 610868.3762046238 603037.7639366868 611047.8848082406 581896.5698148384 135583.29682812252 544053.9352193522 414989.490888898 1.4629136284854143 1.3610318542077138 1.4131326035612366 1.4720092667796423 1.453139843722292 1.4724418285855623 1.4021959172229377 0.3267150128011825 1.3110065367053059 1.0 18.662715276837478 1.8647467771858692 10.142096920328674 0.8138769497940737 1.4359495986163089 0.5451499430991638 0.2300077814860036 0.23901058537787276 18.49338548585787 0.08956494955141672 0.056907212015826755 73.2397371824347 -1.8647467771858692 0.6220726488222352 QHVTEAFQFHF ddPTM_BT-474_Trastuzumab_2h_R1 1 QHVTEAFQFHF 11 0 A0A286YFA2;A0A286YF22;O43175 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 178.81 0.00087723 0.0 122200.0 157610.0 147250.0 178540.0 132730.0 124750.0 140620.0 50106.0 164910.0 110200.0 False True 121542.0887776963 162855.95357274305 167981.5200800558 201143.14569388147 149632.37874765412 116126.32612991291 133817.67337943372 53845.16415311261 124270.14018078668 103166.94165303328 1.1781108059446168 1.5785672325196316 1.6282494895022108 1.9496860377072884 1.4503907584165037 1.125615669799189 1.2970983847663498 0.5219226555557147 1.2045538831491853 1.0 16.654621228592404 2.466710764428824 1.6200849763249239 0.8973708287439187 1.5886811042435862 0.5102277536318032 0.25992275126969716 0.2755935142658041 1.4670812244492921 0.12201973613461957 0.09349220965900296 292.8941950923614 -2.466710764428824 0.6913102754996675 QHWTMTK ddPTM_BT-474_Trastuzumab_2h_R1 2 QHWTMTK 7 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 114.5 0.0058915 1288670000.0 3969900.0 4350000.0 4278900.0 3846600.0 3423800.0 4382300.0 4107000.0 2612200.0 5402200.0 4129900.0 False True 3948526.4994973517 4494787.120369469 4881331.927134475 4333579.165599218 3859800.635547487 4079361.915824581 3908328.71973641 2807135.628482827 4070900.1957713086 3866326.2462147223 1.0212605579684608 1.1625472953220213 1.2625245818077253 1.1208519120293983 0.9983121934747167 1.055100282811992 1.0108636651040015 0.7260472732302706 1.0529117142550688 1.0 21.88253194870919 2.6620076184131753 1.182712983439483 0.9041106052942781 1.1480406270108008 0.3604811976792692 0.10565724775778278 0.4210738214606907 1.2127050016016023 0.055300111447391574 0.04781888890758892 459.2060681795479 -2.6620076184131753 0.24393002171652267 QHYIDLK ddPTM_BT-474_Trastuzumab_2h_R1 6 QHYIDLK 7 0 Q32Q12;P22392-2;J3KPD9;P22392;F6XY72;O60361 Q32Q12;O60361 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 ;;;;; 136.16 0.0030076 17778900000.0 38198100.0 31851300.0 28705700.0 27122600.0 26056100.0 36420600.0 29868600.0 21661700.0 45585600.0 30866300.0 False True 37992445.67380792 32911451.265982598 32747213.045582715 30556318.379057188 29374189.888395596 33902929.64687056 28423741.708867572 23278206.04988384 34351639.69574477 28896386.308031082 1.3147818993286644 1.1389469574206108 1.1332632633195863 1.057444278787371 1.016535063425274 1.1732584581847185 0.983643470359055 0.8055749878805503 1.188786699124296 1.0 24.784385749274566 7.9999999997583 0.373022646992877 0.9783023627066518 5.412269709173494 0.41208904724624074 0.10214849127344956 61.13439341369096 0.8438211095072337 0.08164539560527309 194.6935174189173 99999999.94434652 -7.9999999997583 4.433967346466843 QHYNCEHSK ddPTM_BT-474_Trastuzumab_2h_R1 4 QHYNCEHSK 9 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PIG2;E9PRS3;E9PNX1 P50454 SERPINH1 Serpin H1 0 ;;; 164.97 3.577e-05 386980000.0 598800.0 602930.0 736690.0 456030.0 251223.0 395190.0 596570.0 78483.0 972900.0 297225.0 False True 595576.1273329343 622998.1605711189 840409.5485757298 513763.351242191 283214.75993461814 367871.4454771966 567711.6299812888 84339.79998859885 733141.8311920889 278255.8460328753 2.140390348753242 2.2389400598523745 3.020276341207355 1.8463703766406798 1.017821418570149 1.322061874788907 2.04025050353916 0.30310162819951786 2.634776022299527 1.0 18.08605247271039 3.484914999411724 6.138372182219299 1.3281941615177708 2.4465435782087672 0.3707422146548378 0.627438871930158 0.1491830171787038 23.568889612926643 0.1647573496263364 0.2396368523579743 3054.323259241353 -3.484914999411724 1.1183494166909964 QIAEEDFYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QIAEEDFYEK 10 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 147.74 6.1293e-05 79645000.0 170660.0 161320.0 155560.0 118510.0 112440.0 167360.0 160980.0 145510.0 213990.0 172580.0 False True 169741.18552210866 166689.43868000084 177461.49584824115 133513.35384889587 126758.56751590609 155790.79712306397 153192.7823966809 156368.6950848083 161255.0318190924 161565.7966468284 1.0506009876159066 1.0317124177239836 1.0983852989389804 0.8263714017438157 0.7845631324617023 0.9642560514439316 0.948175824190993 0.9678329097501954 0.9980765432152987 1.0 17.301762287435036 3.754922290174284 24.9928910390243 0.9253266421906593 1.0573808590683431 0.44342173931060846 0.06834159880887403 829.502908430301 1267084.2538142423 0.019068286426024778 0.034244382813657166 5687.511531117426 -3.754922290174284 0.13205421687768382 QIAGGDVTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 QIAGGDVTAK 10 0 Q68E01-2 Q68E01-2 INTS3 Integrator complex subunit 3 0 64.73 0.071091 240520000.0 377810.0 555490.0 457200.0 452460.0 440110.0 363590.0 443990.0 383150.0 356850.0 593100.0 False True 375775.91293863714 573979.1488492042 521569.7859463602 509741.3896082305 496155.3997636554 338455.879098798 422512.5074934912 411742.5985962773 268909.0990450168 555247.8502215439 0.6767714864428607 1.0337350223331554 0.9393458898368608 0.918042977392607 0.8935746434059841 0.6095581981339577 0.7609439772255016 0.7415473980349352 0.4843046198877169 1.0 19.082772376471613 2.8079865304932934 8.57630608009084 0.7103730794855324 0.9047189987271627 0.2519794344286166 0.14790853065347287 0.46094161490967905 53.51288529316593 0.04238313724962634 0.0449585822799479 642.667784868788 -2.8079865304932934 0.19434591924163025 QIANS(ph)QDGYVWQVTDMNR ddPTM_BT-474_Trastuzumab_2h_R1 1 QIANSQDGYVWQVTDMNR 18 0 P10155-3;P10155-5;P10155-4;P10155;D6RE09;P10155-2;D6RDN1 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 1 QIANS(0.998)QDGY(0.002)VWQVTDMNR 123.0 3.6608e-05 174060000.0 83263.0 83353.0 93049.0 95668.0 84961.0 101250.0 90240.0 80536.0 106620.0 91582.0 True False 82814.7212593889 86127.35421704754 106149.49040359336 107779.55899093887 95780.27974669966 94250.82581686314 85874.74644972336 86546.0052735217 80344.92963480366 85737.15835270514 0.9659139963410738 1.004551070642407 1.2380803427950815 1.2570927362387705 1.1171384914890596 1.0992996225642855 1.001604766237437 1.0094340299627045 0.9371074476749165 1.0 16.387632981234333 2.252200408213209 2.4722866796144687 0.985069574982029 1.124580872220625 0.3450540442977841 0.08559809480581677 0.36318588326293183 4.5484236344508355 0.041144717754018297 0.029134058106577126 178.73121522238637 -2.252200408213209 0.139511297238596 QIAQSKEDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_BT-474_Trastuzumab_2h_R1 1 QIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFK 34 2 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-7 SON Protein SON 1 QIAQSKEDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK 159.41 2.364e-14 329550000.0 240190.0 268900.0 276320.0 266010.0 254190.0 363610.0 428990.0 285190.0 549840.0 321780.0 True False 238896.84372761752 277850.1739465171 315223.4541835044 299686.8387253803 286559.5897978314 338474.49654587207 408238.11479905626 306472.3259654767 414339.299478526 301243.7249102819 0.7930350874487664 0.9223434414418691 1.0464067069858003 0.994831805424776 0.9512549676617369 1.1235901980918555 1.3551754975830286 1.017356713593792 1.3754288146646934 1.0 18.20057166387864 2.6703009326666107 4.017768232096634 1.1820411044814878 0.9483271049438747 0.4544591202712174 0.12846683964243472 0.21625006519280832 6.884179023391671 0.04113825307225868 0.03917783332172322 468.0593580739168 -2.6703009326666107 -0.23371399953761307 QIATLHAQVADMK ddPTM_BT-474_Trastuzumab_2h_R1 2 QIATLHAQVADMK 13 0 P35579 P35579 MYH9 Myosin-9 0 ; 167.61 3.1615e-05 1509520000.0 4280600.0 3419700.0 3065600.0 3004300.0 2984900.0 3904200.0 3408000.0 3381300.0 4540400.0 3818600.0 False True 4257553.725219371 3533522.6472476986 3497209.833327122 3384644.071962177 3365009.3221115996 3634311.8434982398 3243142.0201757215 3633629.7758934973 3421479.258242947 3574893.6787320627 1.1909595383349787 0.9884273393274629 0.9782696067670205 0.9467817440552908 0.9412893429896622 1.0166209599797809 0.9071995733663312 1.0164301661643451 0.957085599104159 1.0 21.769468904516753 4.744976997644421 3.806841070078323 0.9703799473803328 1.2147054435527986 0.8005520443713647 0.032825989661726604 0.10277431828321512 2.8828376445845993 0.00735211247427486 0.07099417623657538 55587.481464725555 -4.744976997644421 0.2443254961724658 QICLVMLET(ph)LSQSPQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QICLVMLET(0.557)LS(0.261)QS(0.182)PQGR 97.836 0.006083399999999999 0.0 17566.0 21094.0 17717.0 25108.0 27297.0 19629.0 22181.0 20431.0 26029.0 23762.0 True False 17471.42660776608 21796.101038407734 20211.39960107538 28286.67022561876 30773.111148005075 18272.093431695852 21108.020290351455 21955.664966515837 19614.50172073069 22245.488816328285 0.78539189460031 0.979798700687993 0.9085617208932772 1.2715688317379756 1.3833416474722497 0.821384217832249 0.9488674519419 0.9869715674847425 0.8817294096200556 1.0 14.441225179800375 -0.7994850730233024 7.23805281415035 0.9999906231072206 1.0043951966788633 0.0 0.1801833732418271 0.0 1.3063392105312346e-18 0.1799286104060204 0.04240958018252316 0.15867734564240812 0.7994850730233024 0.0044045735716427 QICLVMLETLSQS(ph)PQGR ddPTM_BT-474_Trastuzumab_2h_R1 13 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.022)QS(0.978)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.008)QS(0.992)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR 434.41 5.164999999999997e-161 10100095000.0 2954466.0 3048123.0 2552070.0 2559841.0 2513084.0 2663815.0 2250123.0 2312537.0 2949799.0 2616619.0 True False 2938559.4833280286 3149577.9314257386 2911379.2730099014 2883916.608133589 2833110.3511841316 2479671.738996018 2141275.9541854076 2485110.2537649497 2222860.5617315145 2449624.135219767 1.1995960690779186 1.285739263482222 1.1885004034501432 1.1772894325581338 1.1565490029473278 1.0122662098826665 0.8741242884567284 1.0144863524305532 0.9074292377234809 1.0 21.22412897167292 2.7857454049077184 2.0513704222102085 0.951789488328795 1.2173172667593453 0.87070555250774 0.04704106622114092 0.1057901235748931 0.8782559875538738 0.016624933575380918 0.016962839785208548 610.5839792363298 -2.7857454049077184 0.2655277784305503 QICVVMLETLSQS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QICVVMLETLSQSPPK 16 0 F8VZX2;Q15366;Q15366-2;Q15366-5;Q15366-8 F8VZX2;Q15366;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 QICVVMLETLSQS(1)PPK;QICVVMLETLSQS(1)PPK 265.43 4.5125e-27 852360000.0 708030.0 525890.0 443980.0 371610.0 397360.0 556270.0 437510.0 490580.0 795240.0 536800.0 True False 704218.0451495287 543393.9307427824 506488.5248566599 418655.78789796843 447961.4406627573 517816.36421873077 416345.9698494955 527189.5707147637 599263.7576700551 502540.96442239836 1.4013147086604778 1.0812928083730227 1.0078552012944828 0.8330779330181682 0.8913928861055681 1.0303963276185641 0.8284816548796731 1.0490479543706364 1.1924674804547055 1.0 18.93888167622143 4.751844190226042 2.054073642356281 0.9703539234231643 1.533176424112344 0.6026440966503859 0.10304650284234271 0.5062703952498442 2.269508529038311 0.026864082503858404 0.5384345270794382 56473.43314029174 -4.751844190226042 0.5628225006891797 QIDNPDYK ddPTM_BT-474_Trastuzumab_2h_R1 5 QIDNPDYK 8 0 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 ;;;; 152.34 0.001067 1873970000.0 4558040.0 4487100.0 4098710.0 3834870.0 3977710.0 5324480.0 5305490.0 4806880.0 6428890.0 4778480.0 False True 4533500.019085851 4636450.410990774 4675772.741374033 4320364.148801917 4484247.790765705 4956411.230077744 5048843.1797600025 5165593.794442054 4844576.202212467 4473513.315337446 1.0134093048393844 1.0364226244939738 1.045212657653916 0.9657653491249358 1.002399562641617 1.1079460103728054 1.128608059005891 1.154706252182554 1.082946637400817 1.0 22.092976879869305 2.733074835396989 22.85487076007962 1.1112388285400867 1.0131682812252052 0.4460449729735999 0.04393989469667716 105.64335571770353 440128.78661486437 0.013810691680826064 0.013392437243422073 540.8475109848018 -2.733074835396989 -0.09807054731488152 QIDSS(ph)PVGGETDETTVSQNYR ddPTM_BT-474_Trastuzumab_2h_R1 8 QIDSSPVGGETDETTVSQNYR 21 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 QIDS(0.226)S(0.774)PVGGETDETTVSQNYR;QIDS(0.001)S(0.999)PVGGETDETTVSQNYR;QIDS(0.005)S(0.995)PVGGETDETTVSQNYR;QIDS(0.001)S(0.999)PVGGETDETTVSQNYR;QIDS(0.12)S(0.88)PVGGETDETTVSQNYR;QIDS(0.194)S(0.806)PVGGETDETTVSQNYR;QIDS(0.178)S(0.822)PVGGETDETTVSQNYR;QIDS(0.037)S(0.963)PVGGETDETTVSQNYR 418.79 1.3352999999999991e-152 6216070000.0 2000545.0 2392528.0 2340502.0 2491594.0 2458839.0 2440115.0 2407683.0 2236996.0 2504329.0 2316235.0 True False 1989774.2880014463 2472161.8481662814 2670024.3375919233 2807029.544931114 2771957.5719694314 2271435.5934628607 2291214.175047756 2403932.0007555205 1887170.674239341 2168410.8992714514 0.9176186527516422 1.1400799769992325 1.231327668796078 1.2945099777326463 1.2783359338863134 1.0475116105651487 1.0566328438109054 1.1086146087732727 0.8703012306723775 1.0 21.048206732921702 2.6076178245973236 7.2960403472313144 1.0319309469977724 1.1803946316434153 0.31421653189202325 0.11382436054910613 0.3647287386364407 20.00252791383382 0.03886312256853758 0.03657208566193728 405.1518483943851 -2.6076178245973236 0.14846368464564286 QIEAQEKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 QIEAQEKPR 9 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 ;;; 143.61 9.2594e-05 828395000.0 819320.0 907940.0 921110.0 825700.0 819240.0 1032440.0 970350.0 916530.0 1095570.0 1045580.0 False True 814908.8721550088 938160.2340386788 1050794.2815683538 930233.5353390727 923565.3579840894 961069.8529023422 923410.4634030262 984926.122645039 825581.4533858732 978850.1892339264 0.832516437262762 0.9584308654758574 1.0734985732502464 0.9503328962597409 0.9435206409950185 0.9818354876699779 0.943362399639225 1.0062072148301549 0.8434196187181562 1.0 19.900728550008747 4.729066615613314 5.373198501887818 0.9704443252953932 0.8278360431661499 0.3435791806314208 0.05562345481412605 0.14885774687812922 15.610340248118877 0.012662656896973875 0.07713766994631102 53587.88486577743 -4.729066615613314 -0.14260828212924326 QIEEELWEEEFIER ddPTM_BT-474_Trastuzumab_2h_R1 2 QIEEELWEEEFIER 14 0 Q9BPZ3;D6RA77 Q9BPZ3 PAIP2 Polyadenylate-binding protein-interacting protein 2 0 ; 167.32 3.8851e-07 167000000.0 273220.0 297290.0 246860.0 249090.0 233940.0 303760.0 281700.0 238320.0 354860.0 299710.0 False True 271749.0138775957 307185.1179344002 281615.74225441454 280624.7684602269 263730.87232898525 282761.7861741266 268073.0948014966 256104.64856443898 267409.50788038276 280582.25120535935 0.9685181892660112 1.0948130775013638 1.0036833799879195 1.0001515322322951 0.9399413939977247 1.00776790035508 0.9554171500509231 0.912761400495696 0.9530521147777968 1.0 18.098064225704405 3.537966884111254 1.9229571272046984 0.9553305732809177 1.0321016245438417 0.3151658600175543 0.03949556990897958 0.3375670369718496 2.473956794443983 0.011688998173751316 0.020613064107747284 3451.174223864374 -3.537966884111254 0.07677105126292394 QIEETLAHFHLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 QIEETLAHFHLTK 13 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 277.52 1.6426999999999998e-32 1646410000.0 1927140.0 2193800.0 2067680.0 2060840.0 1958680.0 2499800.0 2125530.0 312580.0 2509100.0 1489950.0 False True 1916764.4923653824 2266819.306819898 2358791.3714032606 2321742.1326973136 2208106.2879940886 2326994.709896241 2022709.993586888 335906.3068490789 1890765.925217464 1394860.115389629 1.3741625208273798 1.6251230369338527 1.6910594441539213 1.664498186650621 1.5830306305498554 1.6682638525700741 1.4501167330473712 0.24081719961951134 1.35552368610763 1.0 20.41168901686056 1.9265182491599806 8.603961261531733 0.7936563209489224 1.604296438180587 0.5944268528923073 0.2707618432345669 0.2113947971453534 23.167504255303662 0.1072288114387023 0.06762427841787975 84.43417206084874 -1.9265182491599806 0.8106401172316647 QIEHTLNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QIEHTLNEK 9 0 P22694-2;P22694-4;A0A0A0MS54;P22694-9;P22694-6;P22694-7;P22694-5;P22694;P22694-3;A0A087WVC4;P22694-8;B1APG3;B1APF9;B1APF8;B1APG2;B1APG1;B1APF7;B1APG0;P17612-2;P17612;Q15136;K7ERP6 P22694-2;P17612-2 PRKACB;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha 0 117.67 0.0020101 0.0 682180.0 843170.0 678220.0 649720.0 701940.0 877630.0 895060.0 719720.0 948460.0 867440.0 False True 678507.2186773234 871234.4037429715 773707.4808060816 731974.485382707 791327.8982756595 816961.503818801 851762.5283387568 773429.1610641081 714724.7417128675 812079.2365472523 0.8355184914740069 1.072844082859736 0.9527487540448425 0.9013584542499453 0.9744466582351964 1.0060120577547418 1.04886628053714 0.9524060291856813 0.8801170003455444 1.0 19.631260975981057 3.0268525378288618 24.869382650352147 0.9798488976363522 0.9493004546901935 0.05709659365200648 0.06860993278858579 791.5150801584181 733053.8000008491 0.01976769720310543 0.023626266983981986 1063.781755973375 -3.0268525378288618 -0.03054844294615866 QIEIQFAQGDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QIEIQFAQGDR 11 0 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 0 ;;; 168.69 4.1352e-05 663120000.0 430202.0 474540.0 434567.0 451900.0 438346.0 444332.0 453883.0 416069.0 492196.0 473670.0 False True 427885.84023193544 490334.7770345128 495750.25627592334 509110.49366564886 494166.7648197028 413616.37468502176 431926.9452885611 447118.181535572 370900.89088849956 443439.97507071035 0.9649239227106337 1.1057523105721911 1.1179647396400645 1.1480933661528074 1.1143938133699012 0.9327448988311599 0.9740370051655506 1.008294711058188 0.836417354636005 1.0 18.75837930606897 2.7401432583645637 24.928059324402998 0.9575707860710561 1.0958441633819047 0.5436113261974849 0.06382824043321457 109.87235089183375 1730604.6455764326 0.020012793193161627 0.020235230965703347 549.7221778254891 -2.7401432583645637 0.13827337731084866 QIESTETSCHGCR ddPTM_BT-474_Trastuzumab_2h_R1 1 QIESTETSCHGCR 13 0 Q9Y508;A0A096LNV3;A0A096LP02;Q9Y508-2 Q9Y508 RNF114 E3 ubiquitin-protein ligase RNF114 0 171.26 2.5402e-05 330460000.0 116410.0 175010.0 193950.0 218050.0 218710.0 233400.0 230350.0 209750.0 205310.0 235540.0 False True 115783.26149436679 180835.10205422092 221256.4741563791 245655.1076428299 246561.4221042678 217265.60736450236 219207.09047754627 225402.61008891856 154714.10151305154 220507.6355440608 0.5250759739393764 0.8200854433364386 1.0033959758829696 1.1140435433753688 1.1181536707149584 0.985297433480889 0.9941020406694504 1.022198662340106 0.7016269578662155 1.0 17.750469087456917 4.619393115381245 2.258291956542522 1.0027899260084416 0.4679389433130627 0.634823009846928 0.1086732702034326 0.2859910873742717 2.0538497315092195 0.02772193399417224 0.2738745491608554 41628.72555732074 -4.619393115381245 -0.5348509826953789 QIEYEYK ddPTM_BT-474_Trastuzumab_2h_R1 2 QIEYEYK 7 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ; 112.94 0.014519999999999996 372660000.0 600510.0 599280.0 542030.0 532790.0 551330.0 717010.0 649140.0 596490.0 825140.0 657480.0 False True 597276.9208829328 619226.6725275897 618343.1125907818 600241.1593718105 621538.6075110694 667444.7863599905 617738.6182443864 641003.1127148472 621795.303309529 615519.0635030521 0.9703629932819638 1.0060235486508522 1.0045880773727094 0.975178828671379 1.0097796223788078 1.0843608686324318 1.0036059886247914 1.041402534418284 1.0101966619372558 1.0 19.23144401416102 2.997330928169192 24.95820664928209 1.0310876979768155 0.9915018952945122 0.34636472271605223 0.024895729600917453 108.49208924774426 1014522.2001583104 0.006849444885708659 0.008049465519199566 993.8730815753689 -2.997330928169192 -0.039585802682303384 QIEYYFSVDNLER ddPTM_BT-474_Trastuzumab_2h_R1 1 QIEYYFSVDNLER 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 0 89.01299999999998 0.017785 62234000.0 73469.0 58768.0 61048.0 55604.0 64050.0 71555.0 74089.0 68372.0 91314.0 77290.0 False True 73073.45106717333 60724.057353993805 69643.02776127167 62643.46069879346 72206.3878459071 66608.57127235194 70505.03202253506 73474.26582598125 68810.88824491152 72357.2860287019 1.0098976216187454 0.8392251932985221 0.9624881139633462 0.8657519392579862 0.997914540593259 0.9205509897915516 0.9744012786019627 1.015437005152961 0.9509876893063176 1.0 16.142850676033177 2.4482038586888866 1.0970413084810675 0.9927466142686721 0.921609951418326 0.18102638135316307 0.05239431155924541 0.7060471430259498 1.7032830261530756 0.02955959065640381 0.020376409946442804 280.6750823171306 -2.4482038586888866 -0.07113666285034603 QIFDEYENETFLCHR ddPTM_BT-474_Trastuzumab_2h_R1 4 QIFDEYENETFLCHR 15 0 S4R3N1;Q9Y3A3-2;Q9Y3A3-3;Q9Y3A3;B4DM50 S4R3N1 HSPE1-MOB4;MOB4 MOB-like protein phocein 0 ;;; 294.26 5.2672e-44 1245920000.0 1181894.0 1237645.0 1174629.0 1296005.0 1169106.0 1204993.0 1232903.0 1105809.0 1354812.0 1226976.0 False True 1175530.8140247685 1278839.265652799 1340006.553141703 1460079.1001176143 1317984.7192658386 1121694.6701584123 1173262.7717431649 1188330.0827643254 1020936.7361507008 1148669.3412129974 1.0233848609412743 1.1133223633376876 1.1665729249173247 1.271104788585867 1.1474013207961515 0.9765165917755759 1.0214103655837081 1.0345275529940114 0.8887995000132843 1.0 20.131532129321627 2.743265695824699 24.108401639986162 0.9934553551308991 1.1509088377510002 0.5790128045318924 0.06791969676613686 191.27721154536383 980087.5751918696 0.022256138692039424 0.0228868056578123 553.688745330763 -2.743265695824699 0.15745348262010106 QIFLGGVDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QIFLGGVDKR 10 1 P05141 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed 0 ; 127.51 0.00056772 1249070000.0 658370.0 754340.0 891770.0 663770.0 750030.0 1255080.0 837580.0 553930.0 1056150.0 918570.0 False True 654825.4090717832 779447.7508918411 1017323.4645962054 747803.2139421278 845541.8747238992 1168319.273740528 797063.05553368 595267.0693995454 795875.9841849362 859946.076172657 0.7614726402220476 0.9063914267286526 1.1830084383011368 0.8695931462009328 0.9832498782797332 1.358595970273323 0.926875623505547 0.6922144142443064 0.9254952214296085 1.0 19.713886671370883 1.9990083490701556 24.999039977320827 0.8311648376937636 1.0172770233325312 0.10091887930949572 0.17360188681865246 60.75832664514222 1531713.8221574698 0.06648146725385322 0.04848896927523318 99.77192442364043 -1.9990083490701556 0.18611218563876764 QIGASSRPPPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 QIGASSRPPPNR 12 1 Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;Q06787-6;Q06787-5;Q06787-8;Q06787-3;Q06787-4;A8MQB8 Q06787 FMR1 Fragile X mental retardation protein 1 0 69.815 0.04465 52181000.0 21524.0 22578.0 23857.0 21905.0 19808.0 23955.0 23047.0 23262.0 23605.0 22080.0 False True 21408.117175541203 23329.495081310793 27215.85823123866 24678.17075402975 22330.431388785735 22299.047234004487 21932.128561910195 24997.928562042573 17787.864040794793 20670.83549636095 1.0356677251536375 1.1286188739404315 1.3166307784719176 1.1938642131022852 1.080286831788534 1.0787685499180806 1.0610180012206711 1.2093332447275003 0.8605295148290597 1.0 14.335309081912055 3.2037697063927753 7.359415065203069 1.070713411856526 1.1763993054817805 0.2217825805921726 0.10520787960585114 0.3462280067323758 56.99924356097516 0.030928164536877318 0.03755802142706609 1598.7100548235674 -3.2037697063927753 0.10568589362525449 QIGLDQIWDDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QIGLDQIWDDLR 12 0 A0A590UJ56;A0A590UJR3;A0A590UJ21;A0A0C4DGX4;Q13616;A0A590UJC4;A0A590UK34;A0A590UJ50;A0A590UJM8;A0A590UJ59;A0A590UJ97 A0A590UJ56 CUL1 Cullin-1 0 184.55 3.2975e-05 71308000.0 60054.0 52778.0 46940.0 60464.0 57988.0 64130.0 57852.0 48647.0 71989.0 54576.0 False True 59730.67593662664 54534.68382502524 53548.74399020593 68118.73620048637 65372.428078196084 59696.84404578206 55053.477743898475 52277.28616446071 54248.27555317838 51092.91295513565 1.169059904434804 1.067362979928582 1.0480659820125489 1.3332325808141137 1.2794813271969672 1.1683977403715748 1.0775169110487117 1.0231807728474016 1.0617573439356145 1.0 15.640835569859927 2.1383466737228973 3.2555656958634325 1.034167602893953 1.1790425160859666 0.41561092307278547 0.08107859481748875 0.28258976396456614 5.930447381614568 0.038147860647787676 0.026296130802032497 137.51392360582656 -2.1383466737228973 0.1448749131920135 QIGNVAALPGIVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 QIGNVAALPGIVHR 14 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ; 88.552 0.006500499999999999 793840000.0 713170.0 864880.0 732610.0 827860.0 784390.0 789110.0 727310.0 706680.0 839190.0 795210.0 False True 709330.3719606362 893667.0079689989 835755.1200397268 932666.9911176014 884277.4170562222 734560.6830651344 692127.2367059868 759416.050048329 632382.8690698834 744459.0169864674 0.952813191560188 1.2004247212781678 1.1226341557696775 1.2528117328647457 1.1878120848555676 0.9867039908235635 0.9297049547571913 1.020091143663498 0.8494528975278416 1.0 19.50583290401273 2.6662218548954653 5.28051519298536 0.9589204679118846 1.1512177831475359 0.5431953480622373 0.08537531971859931 0.16743824555180017 8.697733501890617 0.027316570459397792 0.025823486783098395 463.6837273367607 -2.6662218548954653 0.1922973152356513 QIGVEHVVVYVNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QIGVEHVVVYVNK 13 0 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 88.087 0.0080698 369920000.0 408680.0 403080.0 344090.0 335200.0 432540.0 676220.0 353820.0 341020.0 519160.0 464770.0 False True 406479.712288617 416496.27413299464 392534.881116105 377636.2856311699 487621.40513456106 629474.5030506576 336704.3748763421 366468.6440644723 391219.97438758815 435107.9806903835 0.9342042213145753 0.9572250857640952 0.9021550937614888 0.8679139486983816 1.1206905567690457 1.446708704473482 0.7738409540135187 0.8422475806649155 0.8991330698343926 1.0 18.731013953270775 QIHEGASLPFFEVFVDAPLHVCEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QIHEGASLPFFEVFVDAPLHVCEQR 25 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 116.38 0.00074859 194610000.0 198500.0 148330.0 170710.0 143330.0 151190.0 243000.0 190620.0 199140.0 232700.0 162480.0 False True 197431.29805542345 153267.07438262162 194744.48416208048 161475.56330404384 170443.1503266618 226201.98196047134 181398.98236088527 214000.83801243067 175354.20302024772 152110.38729387338 1.2979475075163094 1.0076042610194236 1.2802839281832812 1.0615682871944647 1.1205227556049147 1.4870909606156935 1.1925482906727933 1.406878529596973 1.152808865586989 1.0 17.214759149430037 QIILEKEETEELKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QIILEKEETEELKR 14 2 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 119.95 8.8784e-05 274350000.0 410780.0 350380.0 332170.0 336850.0 306570.0 448310.0 426020.0 422260.0 677000.0 476820.0 False True 408568.4061219486 362042.1864908172 378936.6487266018 379495.17546199105 345609.8723172481 417319.38490822644 405411.78504555766 453771.1853928331 510162.42133522884 446388.93937385996 0.9152744839400336 0.8110464990432915 0.8488934543452801 0.8501446653098096 0.7742348473105707 0.9348784167761667 0.9082030249544711 1.0165376992300212 1.1428652825735839 1.0 18.76794175494582 1.8603673860444492 1.5064188319694731 1.0735312918693956 0.8450659461166833 0.7371405081120447 0.053484318717717236 0.18159764555575697 0.774392788533071 0.03709300335864505 0.015910513728333398 72.50490469937384 -1.8603673860444492 -0.22846534575271227 QILEDAAALIIHHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QILEDAAALIIHHVK 15 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 0 168.41 7.261e-07 72675000.0 218800.0 237570.0 216590.0 198910.0 189940.0 241910.0 243820.0 163580.0 285650.0 239650.0 False True 217622.00511096523 245477.37383590225 247083.98936597139 224091.98560529805 214127.73313741732 225187.33109488754 232025.49511714926 175787.17024240925 215255.38501389688 224355.33182531275 0.9699881136785721 1.0941454871553287 1.10130651835079 0.9988262092196688 0.9544133914505815 1.0037083998084904 1.0341875685745174 0.7835212509203054 0.9594395785587959 1.0 17.77542594464021 2.617236246547305 0.9259719683414022 0.9082907998282927 1.0498132924215162 0.22078214445986777 0.07426932140309704 0.6560678210596533 1.1696888630983533 0.04806703329405962 0.03928694618665676 414.22494270777884 -2.617236246547305 0.14152249259322347 QILGVIDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 QILGVIDKK 9 1 Q14444-2;Q14444;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 ; 104.52 0.0063141 0.0 1030800.0 890990.0 826370.0 815850.0 762850.0 1066970.0 990570.0 949210.0 1397950.0 1079740.0 False True 1025250.2873326462 920646.0635351718 942715.7130631974 919136.5263490154 859994.4257338049 993212.8752772182 942652.3447551246 1020044.8701907144 1053443.9540702861 1010830.0687880771 1.0142657198176328 0.9107822293404564 0.9326154238698651 0.9092888653886241 0.8507804153124225 0.9825715577179249 0.9325527344920662 1.009116073697417 1.042157318621616 1.0 19.94710905467343 1.7270959159034271 2.360058036835706 1.0249316753755129 0.9281423829612818 0.44613348473189385 0.04250379053507765 0.2329445078705987 2.7209652113596596 0.02738485317276085 0.01180237084600963 53.345269792310496 -1.7270959159034271 -0.09678929241423107 QILIACS(ph)PVSSVR ddPTM_BT-474_Trastuzumab_2h_R1 5 QILIACSPVSSVR 13 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 QILIACS(0.992)PVS(0.006)S(0.002)VR;QILIACS(0.885)PVS(0.115)SVR;QILIACS(0.865)PVS(0.134)S(0.001)VR;QILIACS(0.994)PVS(0.005)S(0.001)VR;QILIACS(0.996)PVS(0.003)S(0.001)VR 151.18 5.2838e-06 698281000.0 1538600.0 1468150.0 1224500.0 1301450.0 1230630.0 1532320.0 1376130.0 1295160.0 1815480.0 1676850.0 True False 1530316.348554529 1517016.4852345819 1396898.956455202 1466213.4365593242 1387343.4359845202 1426394.3250932894 1309561.334572894 1391811.4158892215 1368079.2801856457 1569831.997376488 0.9748281033333517 0.9663559462221615 0.8898397782627105 0.9339938534885696 0.8837528081368301 0.9086286478279761 0.8342047663453416 0.8865989597709975 0.8714813320610023 1.0 20.58217874021124 4.256085038000099 6.821313434168766 0.893923655396532 0.9714828151955727 0.2970378968096258 0.041653077398833234 0.1551365445472156 29.47279425162549 0.009621363879866195 0.025063225208763234 18033.708193380407 -4.256085038000099 0.07755915979904071 QIMALRVMT(ph)S(ph)KMK ddPTM_BT-474_Trastuzumab_2h_R1 1 QIMALRVMTSKMK 13 2 O75487-2;O75487 O75487-2 GPC4 Glypican-4;Secreted glypican-4 2 QIMALRVMT(1)S(1)KMK 50.305 0.071085 792860000.0 410860.0 774240.0 751380.0 763300.0 925350.0 814620.0 828520.0 768670.0 559880.0 958120.0 True False 408647.97541083756 800010.1103620371 857167.7728879622 859933.7017370876 1043187.8375208442 758307.2368092154 788441.3223462409 826032.0586271709 421905.0760076334 896971.9613121977 0.4555861197857495 0.89190091203262 0.9556238208761785 0.9587074499843605 1.163010531560813 0.8454079609131516 0.8790033093039104 0.9209117946326354 0.4703659581403417 1.0 19.77470336269386 -0.4216620175251298 23.83395787563514 0.9999999999999889 0.8626941304887183 0.04018056419015037 0.20796872031737634 0.0 0.0 0.19523279679058791 0.046016811506879994 0.3787372160107424 0.4216620175251298 -0.13730586951127055 QIPFHDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QIPFHDVR 8 0 Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;Q06787-6;Q06787-5;Q06787-8;Q06787-3;Q06787-4;A8MQB8;Q06787-10;Q06787-11;A0A087WXI3;Q8IXW7;A0A087WY29 Q06787 FMR1 Fragile X mental retardation protein 1 0 123.86 0.0013295 230870000.0 164700.0 205510.0 206050.0 206420.0 177580.0 192570.0 187440.0 160590.0 230980.0 184770.0 False True 163813.2734998901 212350.27611658158 235060.048981294 232552.75083528057 200193.76040087725 179258.08916102053 178372.81110966473 172574.0412594968 174058.0739734288 172977.8204104443 0.9470189479274949 1.227615630794247 1.3589028259434652 1.3444079147458095 1.1573377437977572 1.0363067862438913 1.0311889159339567 0.9976657172001044 1.00624504089843 1.0 17.4002275386848 2.8180063109888147 3.148276036542004 1.0117809168808312 1.2314767235237947 0.45852166133350425 0.10578326400175156 0.23475661357803537 4.537133500667585 0.03604804518355441 0.037845749338759324 657.6673942381004 -2.8180063109888147 0.2196958066429635 QIQELVEAIVLPMNHK ddPTM_BT-474_Trastuzumab_2h_R1 2 QIQELVEAIVLPMNHK 16 0 P17980;E9PM69;R4GNH3;E9PN50;E9PMD8 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 ; 193.96 2.9033999999999995e-10 482330000.0 790980.0 814810.0 740030.0 726390.0 723970.0 862910.0 849530.0 795150.0 1006400.0 872890.0 False True 786721.4515661392 841930.4582869547 844219.7915439295 818350.8995215554 816163.2881936205 803259.0627716482 808434.9883802482 854488.1306898876 758386.2050690914 817181.412881273 0.96272558230646 1.0302858643326454 1.0330873637560145 1.0014311224188996 0.9987541020003592 0.9829629628254314 0.989296838666232 1.0456529201723717 0.9280512174097579 1.0 19.640296864204263 3.4912513041449142 23.04741571970835 0.9964741548700647 1.0119250644471354 0.039669497351335514 0.03249230089747926 870.055373243597 1419141.728052547 0.008674575116756029 0.01284364090599112 3099.212137009676 -3.4912513041449142 0.015450909577070626 QIS(ph)LPDLSQEEPQLK ddPTM_BT-474_Trastuzumab_2h_R1 4 QISLPDLSQEEPQLK 15 0 H0YBZ4;Q15390-2;Q15390 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 QIS(1)LPDLSQEEPQLK;QIS(0.771)LPDLS(0.229)QEEPQLK;QIS(1)LPDLSQEEPQLK;QIS(1)LPDLSQEEPQLK 376.05 8.281499999999997e-98 829350000.0 903880.0 745969.0 737892.0 734166.0 689035.0 826561.0 805780.0 827880.0 1025020.0 822306.0 True False 899013.6105105091 770798.1272172163 841780.779727759 827111.3403242645 776779.5230195868 769422.7835853045 766801.3430214775 889660.6094894602 772417.5555643083 769825.7270684137 1.1678144531932675 1.0012631432213959 1.0934692750960122 1.0744137422816473 1.009032948246162 0.999476578309946 0.9960713393426672 1.1556649488415927 1.0033667730302605 1.0 19.55417236030862 4.752374688234815 24.078064307961146 1.0458217118875508 1.1678145913321605 0.35241616152036814 0.05197810597681495 1718.442560914975 2995175.249962908 0.012821904720057701 0.24607280945784143 56542.45853727232 -4.752374688234815 0.12199287944460968 QISGQYSGS(ph)PQLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QISGQYSGSPQLLK 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 QISGQYS(0.11)GS(0.89)PQLLK 130.4 6.5365e-05 137300000.0 120800.0 100080.0 92717.0 82649.0 99851.0 106540.0 104470.0 87808.0 129090.0 100410.0 True False 120149.62622214174 103411.10230036246 105770.74768938901 93112.35492580722 112566.43298675508 99175.14056818359 99416.3869858444 94360.67883998944 97277.49921737767 94001.74783467404 1.2781637468428289 1.1000976543780565 1.1251997981507083 0.9905385492360095 1.1974929783723995 1.0550350695883686 1.057601473120408 1.0038183439519304 1.0348477710059698 1.0 16.52039996154157 7.999999999999999 0.5602004863224964 1.04093458243423 11.447549980746572 0.576012448951983 0.057767794039280555 103.3648162927866 0.9136810278816971 0.026066199552474266 1299.3358114394766 99999999.99999979 -7.999999999999999 10.406615398312342 QISSLRDEVEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 QISSLRDEVEAK 12 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;;; 203.7 1.1128e-07 2580340000.0 2677530.0 2417190.0 2212250.0 2235330.0 2196900.0 2553210.0 2708250.0 2357460.0 3496840.0 2806670.0 False True 2663114.4759815517 2497644.707927787 2523715.5707782945 2518322.5488064517 2476662.192953524 2376712.6023098542 2577241.600980312 2533385.636139318 2635090.637255362 2627545.917688923 1.0135367979882586 0.9505617736738198 0.9604839077362526 0.9584314138348001 0.9425761796512734 0.9045370382719359 0.980855018985603 0.9641641727683204 1.0028713939937821 1.0 21.325284545554734 1.3696007631955287 1.964230312421497 1.0030528878615241 0.9556129558983218 0.2836691646282036 0.026249880389164225 0.40022942418877694 2.7229870455257883 0.023397471645344888 0.0071486390968951005 23.420748105713155 -1.3696007631955287 -0.047439931963202286 QIT(ph)MEELVR ddPTM_BT-474_Trastuzumab_2h_R1 4 QITMEELVR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR 177.16 0.00058621 1372600000.0 1917050.0 1779340.0 1343300.0 1579010.0 1328860.0 1393800.0 1388890.0 1333410.0 1576330.0 1395160.0 True False 1906728.8158042766 1838564.2562662563 1532424.963827091 1778912.504100456 1498082.4442296973 1297449.8866522848 1321704.0846249599 1432915.8251187867 1187864.5932398243 1306119.6943434286 1.4598423284343534 1.4076537274713414 1.1732653373681985 1.3619827583984903 1.1469717903478718 0.9933621644871513 1.0119318239737327 1.0970784923652017 0.9094607472686109 1.0 20.316855682535497 3.7437987933695323 0.5194223076636204 0.9771425903034364 1.548022316379088 0.8108035702334634 0.07952337787928804 0.7503553261838113 0.3136130710042699 0.05721684755406545 0.23576159179178108 5543.688169370377 -3.7437987933695323 0.5708797260756516 QITEEDLEGKTEEEIEMMK ddPTM_BT-474_Trastuzumab_2h_R1 2 QITEEDLEGKTEEEIEMMK 19 1 B8ZZ98;Q8WVK2 B8ZZ98 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 0 ; 178.32 3.486e-14 132950000.0 98629.0 69200.0 60382.0 66945.0 61955.0 96977.0 87585.0 82201.0 130517.0 90110.0 False True 98097.99242271195 71503.28016771661 68883.26075024744 75420.23013597446 69844.60201394491 90273.20824930308 83348.17894280837 88335.25602822032 98352.83418819803 84359.10265294767 1.1628619714731427 0.8476059834571765 0.8165480497538286 0.8940378425580506 0.8279438711111563 1.0701063123049799 0.988016424092392 1.047133661338605 1.1658828875032066 1.0 16.364256128485845 2.7256127487965425 24.67675657527418 1.050737600269249 0.9002880568168283 0.3314307224989622 0.10205901588949645 752.4455804818376 1434049.5571990095 0.032622306395222275 0.030937196935232773 531.6340010614152 -2.7256127487965425 -0.15044954345242068 QITQEEDDS(ph)DEEVAPENFFSLPEK ddPTM_BT-474_Trastuzumab_2h_R1 5 QITQEEDDSDEEVAPENFFSLPEK 24 0 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 QIT(0.478)QEEDDS(0.522)DEEVAPENFFSLPEK;QIT(0.326)QEEDDS(0.674)DEEVAPENFFSLPEK;QIT(0.297)QEEDDS(0.703)DEEVAPENFFSLPEK;QIT(0.039)QEEDDS(0.961)DEEVAPENFFSLPEK;QIT(0.052)QEEDDS(0.948)DEEVAPENFFSLPEK 127.2 5.5621e-05 920093000.0 264969.0 289716.0 274968.0 304972.0 308863.0 308692.0 305834.0 285510.0 333684.0 305873.0 True False 263542.43634482357 299359.02192297997 313681.10433529894 343581.4239305166 348194.8722755718 287352.8486228059 291039.64102066355 306816.2059904041 251452.04933652058 286351.9232689497 0.9203445653036428 1.0454234722978049 1.0954391392045268 1.1998572246634271 1.2159683381925028 1.0034954378599237 1.0163704776213816 1.0714654977268436 0.8781224392208807 1.0 18.12742976772436 1.6315402202068157 1.311966285922556 0.9549899143655499 1.0884234549099208 0.2165957610246999 0.0904401918776145 0.6681447397073923 2.202235829811733 0.08177733696972053 0.029736520098639106 42.80950638263664 -1.6315402202068157 0.13343354054437084 QITT(ph)SPITVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QITTSPITVR 10 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 QIT(0.056)T(0.798)S(0.145)PITVR;QIT(0.026)T(0.487)S(0.487)PIT(0.001)VR 136.82 0.0012009 1509300000.0 2617980.0 3011450.0 2942630.0 3117910.0 3129720.0 3590900.0 3007570.0 2722360.0 3346440.0 3047930.0 True False 2603885.0865649194 3111684.2927900315 3356926.726201526 3512637.086313481 3528271.290696213 3342669.5350693706 2862082.3490668717 2925516.327063973 2521754.7019986147 2853408.497935843 0.9125525099012535 1.0905148334145023 1.1764620202925478 1.231031970660536 1.2365111035621312 1.1714654727801712 1.003039821020125 1.0252707697409231 0.8837692548483167 1.0 21.44425486926134 2.1814140344735935 5.638135913450989 0.983443248016276 1.1449744613145112 0.4084447106084743 0.0930832666201442 0.21614715702137566 14.050131946498047 0.03779146333411683 0.027989187218691043 151.8497336454843 -2.1814140344735935 0.16153121329823517 QITTS(ph)PITVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QITTSPITVR 10 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 QIT(0.002)T(0.368)S(0.629)PITVR;QIT(0.002)T(0.453)S(0.545)PITVR 163.11 6.8827e-06 1651720000.0 1951600.0 2247800.0 2030910.0 2234400.0 2215600.0 2327400.0 2122880.0 1997360.0 2268900.0 2177760.0 True False 1941092.8024431462 2322616.6641762084 2316844.4750138265 2517274.8109018058 2497743.5271099415 2166512.3161102943 2020188.1842108693 2146413.145588572 1709759.9967023649 2038773.4923258617 0.9520885030875696 1.1392225143787476 1.1363913076831 1.2347005787435774 1.2251206602948719 1.0626547403452389 0.990884074084272 1.052796278580174 0.8386218494296032 1.0 20.959270070205786 2.427010133293685 3.545470233100678 0.9840294814813637 1.1434434122527053 0.43585901020428075 0.08851453882124956 0.23975610148139115 6.26037416026629 0.033006411192290475 0.027669813629999988 267.3068778037301 -2.427010133293685 0.15941393077134158 QITVNDLPVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 QITVNDLPVGR 11 0 P32119;Q06830;A0A0A0MSI0;A0A0A0MRQ5 P32119;Q06830 PRDX2;PRDX1 Peroxiredoxin-2;Peroxiredoxin-1 0 ;;; 212.28 1.5079e-08 4005060000.0 2744690.0 3135300.0 3011960.0 3200650.0 3086250.0 3103020.0 3034740.0 2829830.0 3309140.0 3138050.0 False True 2729912.8940037284 3239656.565171123 3436017.7875743643 3605851.9618299636 3479265.6438630857 2888515.5311233844 2887938.032367396 3041006.284185581 2493646.7872042223 2937776.962380228 0.9292444351500104 1.1027578358250545 1.169597907388604 1.227408345835911 1.184319193872409 0.983231732058743 0.9830351552718107 1.0351385837411275 0.8488210027979233 1.0 21.486293439186255 2.723041120458456 23.03988011793484 0.9785043270639333 1.12998595095204 0.4325223516109069 0.0869373371556903 295.9985959285443 439430.9067223628 0.029275505638557284 0.027717814623554337 528.4952891131855 -2.723041120458456 0.1514816238881067 QIYVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 QIYVGR 6 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2;H0YAW6 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ;;; 126.04 0.041095 1118580000.0 746760.0 801280.0 686340.0 812490.0 674147.0 775610.0 606137.0 590656.0 806180.0 750260.0 False True 742739.5271328365 827950.120416011 782970.7062257766 915351.1506935228 759995.6244676777 721993.9062895515 576815.8376417989 634733.7500103951 607507.7412585447 702377.7644700977 1.057464465284133 1.1787817927873188 1.114743014133543 1.3032177227080939 1.0820325797771364 1.027928193077486 0.8212330555153211 0.9036928304375694 0.864930201366601 1.0 19.421887647902782 2.590243792465298 2.383878475583745 0.8897034994898756 1.159814121102299 0.7033940612903142 0.0760171952723562 0.14758248814738623 1.655083583186572 0.02682959122298168 0.024271333485953943 389.26359792210076 -2.590243792465298 0.2701106216124234 QIYYSDKYDDEEFEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QIYYSDKYDDEEFEYR 16 1 P61024;Q5T179 P61024 CKS1B Cyclin-dependent kinases regulatory subunit 1;Cyclin-dependent kinases regulatory subunit 0 ; 195.92 4.3076e-11 1606480000.0 2443500.0 1815380.0 1607300.0 1580650.0 1311140.0 2278000.0 2001840.0 1817810.0 2938700.0 2160100.0 False True 2430344.4674983746 1875803.8258796146 1833593.8690979527 1780760.1279323036 1478105.9072643658 2120527.2218352 1905003.351428572 1953464.2128521467 2214496.7615625365 2022240.5686453485 1.2018077894295263 0.9275868830661287 0.9067140168818956 0.8805876786089762 0.7309248613553996 1.0486028490941073 0.942026077888789 0.9659900227205542 1.0950708812285255 1.0 20.94752320185047 1.4042189915190293 4.93850267600675 1.0465726910018993 0.940074701965624 0.09922453741264825 0.1155439132035489 0.45209806629803795 17.654252003076955 0.08087307702875651 0.029227637619602197 25.36407282859639 -1.4042189915190293 -0.10649798903627528 QKAEADKNDK ddPTM_BT-474_Trastuzumab_2h_R1 4 QKAEADKNDK 10 2 P08238;Q58FF7;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha 0 ;;; 146.16 0.0001158 27067550000.0 20022840.0 10940660.0 10757160.0 9342660.0 9042560.0 10186800.0 15390610.0 14722540.0 27453540.0 16674050.0 False True 19915039.254186634 11304813.254331367 12271674.625089113 10525439.798075484 10194076.416547779 9482610.493147872 14646107.396460306 15821210.694343308 20687982.9255887 15609897.853627594 1.2757956164049187 0.7242080223929354 0.7861470164737363 0.6742798637615345 0.6530520899070952 0.6074742180932466 0.9382577345345464 1.0135371059245342 1.3253118706847276 1.0 23.895957761005445 1.7319654310235104 2.3541350387814535 1.1551378575783868 0.7757613729621587 0.3590185668887209 0.19411129689617218 0.27231090889042026 3.1470768238869278 0.12462129308847884 0.0539270255386214 53.94676802523132 -1.7319654310235104 -0.3793764846162281 QKDEDLER ddPTM_BT-474_Trastuzumab_2h_R1 1 QKDEDLER 8 1 Q14789;Q14789-2;Q14789-4;Q14789-3 Q14789 GOLGB1 Golgin subfamily B member 1 0 70.977 0.052454 0.0 524100.0 553380.0 465010.0 471490.0 483140.0 600820.0 568640.0 485960.0 664880.0 605320.0 False True 521278.3038329838 571798.9187747266 530479.3660606231 531180.5856570416 544665.0152048636 559286.7275781499 541132.7107842503 522224.8028548789 501029.23293554934 566687.9593594747 0.919868324751743 1.0090190012525213 0.9361048832945418 0.9373422831454423 0.9611374411774982 0.9869394934918144 0.9549041970044512 0.9215385543838758 0.884136012880635 1.0 19.112195023704583 1.7978103203284554 5.863940564126289 0.9272417709117079 0.9596671315094997 0.06310345966011766 0.0360782609448202 0.40031560739032157 25.761012465385868 0.015868879382576428 0.009061443112252588 62.778411196756146 -1.7978103203284554 0.032425360597791775 QKDEEDKAR ddPTM_BT-474_Trastuzumab_2h_R1 3 QKDEEDKAR 9 2 O00170 O00170 AIP AH receptor-interacting protein 0 ;; 115.18 0.00085411 720959000.0 812820.0 598070.0 567079.0 488219.0 513932.0 559500.0 766020.0 704540.0 1199690.0 799670.0 False True 808443.8674327926 617976.3984090505 646918.7940609718 550027.4753417778 579378.1938863805 520823.08192133205 728964.6861194277 757116.35238163 904042.4745223938 748634.3759680688 1.0798914575454583 0.8254715763084446 0.8641318310082045 0.7347077465291787 0.7739134248773696 0.6956975242391841 0.9737259061565187 1.0113299317875872 1.207588782379068 1.0 19.513901770203415 1.835817971060186 2.3730839418064438 1.0918898598332647 0.8253365685092477 0.4836237780119349 0.11220889970619653 0.23521758479449312 2.4799703251769967 0.0671906454433256 0.03196617207294718 68.52009730928427 -1.835817971060186 -0.26655329132401695 QKDS(ph)DS(ph)ESEER ddPTM_BT-474_Trastuzumab_2h_R1 1 QKDSDSESEER 11 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 QKDS(1)DS(0.997)ES(0.003)EER 97.081 0.0037172 234210000.0 493610.0 401700.0 347050.0 382030.0 408010.0 432210.0 498010.0 516380.0 712550.0 503110.0 True False 490952.4586052272 415070.34166722244 395911.6233873236 430394.9588295814 459967.65503526235 402332.3400129031 473919.35371705226 554914.8977245094 536951.6001808228 471001.0890658581 1.042359497679589 0.8812513416697958 0.8405747514778356 0.9137876086086949 0.9765745042066071 0.8542068147036633 1.0061958766528163 1.1781605406159006 1.1400219928275859 1.0 18.8453708701307 1.9768200995604 5.0224424271770305 1.120277792994742 0.915813962808923 0.5910908906513983 0.06980086917311441 0.11554332198872218 7.918368808778836 0.029375443014836394 0.018596815629081352 94.80256755225703 -1.9768200995604 -0.20446383018581904 QKDYDFEER ddPTM_BT-474_Trastuzumab_2h_R1 2 QKDYDFEER 9 1 Q96NC0 Q96NC0 ZMAT2 Zinc finger matrin-type protein 2 0 ; 65.695 0.06004 2220400000.0 1702220.0 1829000.0 1560030.0 1585290.0 1638230.0 1969180.0 1820180.0 1594330.0 2307040.0 2026860.0 False True 1693055.4366544196 1889877.1593461533 1779668.6639761585 1785987.5514565527 1846848.8799500426 1833055.221551117 1732130.939637163 1713307.0004437005 1738500.9047521788 1897504.0595178488 0.8922539207028737 0.9959805618683981 0.937899792650967 0.9412298975056569 0.9733043103050448 0.9660349406666839 0.9128470270979516 0.9029266587598488 0.9162040502795697 1.0 20.85567154146821 2.2344523938511966 24.997331736735358 0.9221195242264654 0.9531147656942495 0.021841360934484078 0.036115815331829774 198.02457794644644 1204905.2966092764 0.012393088003283799 0.00948841616212121 171.57436247857186 -2.2344523938511966 0.030995241467784096 QKDYETATLSEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKDYETATLSEIK 13 1 P12814-3;P12814;P12814-2;P12814-4;H9KV75;H7C5W8 P12814-3 ACTN1 Alpha-actinin-1 0 127.71 7.223e-05 0.0 143290.0 100750.0 91614.0 81721.0 75100.0 134570.0 104430.0 91783.0 149260.0 119010.0 False True 142518.54256101552 104103.40284533877 104512.45487683694 92066.87022095715 84663.53984742572 125267.49264370637 99378.32193865927 98632.31352463034 112476.8729815306 111414.67991041283 1.2791720325868452 0.9343777941025997 0.9380492315812792 0.826344161245062 0.7598957329097263 1.1243356148797665 0.8919679347332699 0.8852721526816697 1.0095336904613634 1.0 16.76557980800032 4.740019767623945 5.0648679046729965 0.9198094143616813 1.2965516682863212 0.5398646061231311 0.09639668146928353 0.12333789017741503 10.181037952763594 0.02271554410783192 0.16287594753572773 54956.588767893605 -4.740019767623945 0.3767422539246399 QKEECTIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKEECTIR 8 1 Q8TCU6;Q8TCU6-3;Q8TCU6-2;H0YDZ4 Q8TCU6 PREX1 Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein 0 68.893 0.050460000000000005 84738000.0 87559.0 76554.0 63786.0 63116.0 64672.0 101100.0 98704.0 91981.0 150310.0 99969.0 False True 87087.59207271945 79102.05361212969 72766.51436214906 71106.4791285708 72907.59585902425 94111.194963801 93929.31043410339 98845.08929005403 113268.11455080971 93588.89283223313 0.9305334152080645 0.8452077080762942 0.7775122897606007 0.7597747657516991 0.7790197495948366 1.005580813232871 1.0036373718244587 1.0561626096725294 1.210273047613176 1.0 16.514049699884833 2.566125759842827 2.6699354596880784 1.0681548656998738 0.8140886105201522 0.7361019590217499 0.07123007263447005 0.14908434283048763 2.089123744545151 0.02686400558857381 0.024156994411470793 368.2355891936117 -2.566125759842827 -0.2540662551797216 QKEEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKEEEAR 7 1 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 0 ; 140.5 0.0023895 1355560000.0 2617200.0 2230500.0 2002260.0 1862540.0 1972680.0 1386830.0 2405600.0 2292000.0 2832900.0 2725400.0 False True 2603109.2859982564 2304740.8441342744 2284160.8040440944 2098337.3730294737 2223889.105009587 1290961.7063466692 2289231.9377155863 2463040.6785401762 2134769.753915171 2551462.6386676673 1.0202419767187179 0.9033018195938676 0.895235842150856 0.8224056826186534 0.8716134311772114 0.505969276908867 0.8972233820013866 0.9653445992947545 0.8366847005958564 1.0 21.28289308566802 -0.3986579784493509 6.929403210844603 0.9999999999644074 0.8586606858835443 0.09763772266175885 0.12987070420346436 0.0 0.0 0.12902487882039296 0.030411455585224144 0.39933927170145134 0.3986579784493509 -0.1413393140808631 QKEELQR ddPTM_BT-474_Trastuzumab_2h_R1 4 QKEELQR 7 1 P80303-2;P80303;Q2L696;H0YEG8 P80303-2 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 0 ;;; 93.551 0.013544999999999998 1263820000.0 1187800.0 1476130.0 1343480.0 1258950.0 1273450.0 1296800.0 1447200.0 1233220.0 1610730.0 1342740.0 False True 1181405.0167769864 1525262.09471057 1532630.3062625015 1418332.9409169483 1435616.3091704964 1207155.2683388463 1377193.4071591294 1325249.1385642737 1213787.17417621 1257045.1836224494 0.939827010332684 1.213370938915016 1.219232471696756 1.1283070484624214 1.1420562505426062 0.9603117565433611 1.0955798766043132 1.0542573614937847 0.9655875460883737 1.0 20.261605076693165 2.762783717889828 23.82684185410316 1.0281234929879646 1.1382940039236447 0.3177254233353657 0.08137817712577695 534.1932348668465 525453.2042575597 0.02453862476227621 0.026010530267501535 579.1402081628953 -2.762783717889828 0.11017051093568009 QKEGESEDLASR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKEGESEDLASR 12 1 Q08379;B7ZC06;H0Y7B8 Q08379 GOLGA2 Golgin subfamily A member 2 0 ; 140.31 5.4323e-05 1154270000.0 2696230.0 2886050.0 2785470.0 2865580.0 2756200.0 2923910.0 3030460.0 2823070.0 3295720.0 2950920.0 False True 2681713.797259314 2982110.429595934 3177639.964260732 3228362.1341854637 3107185.732722706 2721786.9838437955 2883865.07231858 3033741.8186589917 2483533.9663854353 2762589.759190285 0.9707245849073604 1.0794619141967683 1.1502395365398363 1.16859990646302 1.1247365709606563 0.985230244479568 1.0438991394668171 1.0981514025260781 0.8989876104924673 1.0 21.397589909135018 2.745443523451602 24.905703182500588 1.0216684665004276 1.1044216072851816 0.296313848192317 0.069512889851928 787.0779950262561 2848031.6072956948 0.022416210032029572 0.023333291478372774 556.472264754044 -2.745443523451602 0.08275314078475393 QKEIEER ddPTM_BT-474_Trastuzumab_2h_R1 4 QKEIEER 7 1 H0Y6J6;Q5W012;Q96I25;Q5W010;Q5W011 H0Y6J6 RBM17 Splicing factor 45 0 ;;; 103.56 0.0076133 1387220000.0 2157480.0 2238410.0 2169350.0 2022520.0 2017220.0 2072710.0 2337720.0 2108370.0 2702970.0 2420500.0 False True 2145864.367398563 2312914.123702579 2474775.623671776 2278570.824626351 2274101.010000322 1929428.4363345224 2224635.5526423687 2265707.2754859272 2036859.261442369 2266021.6177056893 0.9469743583343289 1.0206937593315495 1.0921235721384897 1.0055379908217148 1.0035654524350095 0.8514607368521214 0.9817362443765107 0.9998612801319696 0.8988701809052716 1.0 21.111730193769464 2.9795531637275032 24.80137309877037 0.9511534535061005 1.0198693819484062 0.28003952664776965 0.053950295422940296 953.7323841733744 1156849.8614575397 0.016717379582098738 0.017938147069137444 954.010519943752 -2.9795531637275032 0.06871592844230567 QKELAETEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QKELAETEPK 10 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 106.01 0.0037032 84086000.0 355210.0 313530.0 282710.0 278680.0 261650.0 355890.0 357560.0 330760.0 491550.0 322060.0 False True 353297.5888275411 323965.65651711245 322513.110640629 313960.8594262957 294969.5765789474 331288.16197494726 340263.45678815496 355442.9907652481 370414.0889325435 301505.8550705621 1.171776875592874 1.0744920905144413 1.0696744531383995 1.0413093283141008 0.9783212220204315 1.0987785358178703 1.1285467630753716 1.1788924983963012 1.2285469177567205 1.0 18.201826493143415 2.2663667313670657 3.1442173896629706 1.1539168884997588 1.064609195798734 0.14281027542861913 0.07078286392931062 0.3507919097588252 7.1856907868433515 0.027439875961906546 0.020734556583944987 184.65740638707263 -2.2663667313670657 -0.08930769270102479 QKELSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKELSEK 7 1 Q15046;Q15046-2;H3BVA8;H3BRC9;H3BSN6;H3BQK5 Q15046 KARS Lysine--tRNA ligase 0 73.985 0.043238 828940000.0 387450.0 334570.0 320280.0 308210.0 333970.0 329630.0 393380.0 377710.0 571060.0 384060.0 False True 385364.0122497418 345705.9601981645 365372.64007633517 347229.35439851705 376499.09990472416 306843.4539655566 374350.7065424667 405896.63817251706 430329.91481195827 359548.96198969166 1.071798428000441 0.9614989799583289 1.0161971767472673 0.9657359389302651 1.0471427808363927 0.8534121535702107 1.0411675352109608 1.1289050479421332 1.1968604009606234 1.0 18.455828719120717 1.9170255747319844 4.622124464162758 1.1182528225908746 0.985269240673592 0.36567807387676987 0.07161636497624302 0.2099295158852592 7.684858419620807 0.031241351299662587 0.01835949176712885 82.6086594729459 -1.9170255747319844 -0.13298358191728255 QKFNDS(ph)EGDDT(ph)EETEDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKFNDSEGDDTEETEDYR 18 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 2 QKFNDS(1)EGDDT(1)EETEDYR;QKFNDS(1)EGDDT(1)EETEDYR 222.31 1.3207e-18 1233910000.0 1707900.0 1337910.0 1266550.0 1155640.0 1455500.0 1931760.0 1714920.0 1765430.0 2656900.0 1808950.0 True False 1698704.8561655276 1382441.5255663248 1444869.2309500482 1301943.905509563 1640849.2975756081 1798221.97807391 1631962.7679694125 1897175.3512718945 2002142.5956359988 1693501.2622799862 1.0030726837950719 0.8163215206023071 0.8531846200130958 0.768788269904645 0.9689094033307706 1.0618368100020998 0.9636619731669267 1.120268046755217 1.1822504300590153 1.0 20.691577631493946 2.9679480025848877 3.568590662260233 1.0672717734443296 0.8565155256908737 0.5948846049604564 0.07942128611901413 0.16073363552063905 4.276190670228388 0.024917421033280762 0.028040252900257422 928.8551697111185 -2.9679480025848877 -0.2107562477534558 QKFNDS(ph)EGDDTEETEDYR ddPTM_BT-474_Trastuzumab_2h_R1 7 QKFNDSEGDDTEETEDYR 18 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 1 QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(0.999)EGDDT(0.001)EETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR 301.0 8.7558e-50 40623960000.0 21903220.0 18161570.0 17024540.0 17164410.0 18480290.0 22830820.0 21924130.0 22839380.0 31153500.0 23436470.0 True False 21785295.49719654 18766066.878549077 19421447.25204562 19337422.546093382 20833645.390239462 21252579.151369415 20863576.073590115 24543770.511621717 23476137.36051264 21940734.419628568 0.9929155095969363 0.8553071433087774 0.8851776280866356 0.8813480066917807 0.9495418426650895 0.968635723166882 0.9509060031703037 1.11863942392304 1.0699795600055426 1.0 24.38710848192269 2.115162420012032 1.5898061745959993 1.0724447993688904 0.908553397529447 0.5945517642753826 0.05031207407085595 0.23285703905544308 1.1251193244032478 0.02986137322902085 0.01607707270360825 130.36542355962132 -2.115162420012032 -0.1638914018394434 QKGDGRPET(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKGDGRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 QKGDGRPET(1)PK 91.207 0.017547 97403000.0 231210.0 148830.0 141380.0 128210.0 139640.0 216780.0 210550.0 198020.0 344300.0 204400.0 True False 229965.1910498461 153783.71658036526 161285.07510301063 144441.37285433238 157422.3262888752 201794.50884523048 200364.89212089166 212797.25792518543 259451.8783836329 191355.01700435567 1.2017724680017747 0.8036565698032615 0.8428578337161624 0.7548345223216414 0.8226715387623827 1.0545556212964993 1.0470846035687211 1.1120547621719357 1.3558666108959514 1.0 17.545892200958868 2.331251028408856 1.6511457418989384 1.1558550085796255 0.8738882031416282 0.3881914122781177 0.14420526074732018 0.3659571967528821 2.015328536863304 0.07194593475520385 0.04855497851732886 214.41295805105523 -2.331251028408856 -0.28196680543799735 QKGESRPET(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 QKGESRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 QKGES(0.037)RPET(0.963)PK;QKGES(0.004)RPET(0.996)PK 81.311 0.035407999999999995 411640000.0 643510.0 415600.0 404820.0 368350.0 377440.0 562330.0 542810.0 556340.0 874590.0 560310.0 True False 640045.4136606831 429432.99476449436 461815.13724148157 414983.072232224 425504.7467378478 523457.45068243635 516552.2065644317 597856.9158372784 659059.013405581 524550.5360944744 1.2201787427882973 0.8186684889540389 0.880401611406048 0.7911212431922542 0.811179700445892 0.9979161485179739 0.9847520324932008 1.1397508432430639 1.2564261554522194 1.0 19.000722245639206 2.0015740163382882 1.8392850841567956 1.148764813980393 0.8978002318486089 0.3395981204460905 0.1309040519159983 0.35338745292741935 2.2312604044713087 0.07754155037599918 0.039292024622905375 100.36308822974468 -2.0015740163382882 -0.2509645821317841 QKGS(ph)EENLDEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKGSEENLDEAR 12 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;H0YG19 P35611 ADD1 Alpha-adducin 1 QKGS(1)EENLDEAR 120.63 0.00023659 598970000.0 406310.0 307450.0 306320.0 290400.0 277280.0 406800.0 395060.0 326800.0 477550.0 392850.0 True False 404122.47210528504 317683.2873925499 349447.19341883034 327164.6102246169 312589.96443267935 378678.87350419624 375949.43852424336 351187.47545677546 359864.2013421543 367777.976664194 1.0988218374866856 0.8637909487511702 0.9501580181292342 0.8895709666795523 0.8499420418479678 1.0296398847447994 1.0222184643413557 0.9548899002656518 0.9784821935401925 1.0 18.488475565093 2.7155243048249886 24.92811499628843 0.9931246522751369 0.9255761730175582 0.19360436769479916 0.06734688174450806 1271.4494252521856 1375862.0452360758 0.021248531926564045 0.02004526814946342 519.4267418542406 -2.7155243048249886 -0.06754847925757868 QKGYNHGQGSYSYSNSYNS(ph)PGGGGGSDYNYESK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 33 1 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 QKGYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK 200.63 3.431700000000001e-27 284970000.0 137110.0 158180.0 150050.0 169460.0 182860.0 187270.0 198310.0 169370.0 286600.0 227020.0 True False 136371.8149943532 163444.92567817075 171175.73574201946 190913.6186248748 206146.13710386516 174324.46568616258 188716.9876822321 182009.2494434336 215971.2702432448 212531.3892383998 0.6416549361627838 0.7690389935522983 0.8054139031200184 0.8982843395933576 0.969956192553881 0.8202292673606913 0.8879487795120244 0.8563876145338276 1.016185284522779 1.0 17.697316406295542 5.605235311124168 0.6053723631710698 0.9178563704635315 1.2278148498010937e-10 0.7031072581886054 0.05929674636543426 5.314819193448389 0.6763107033470166 0.02615452696322424 4.298003756809266 402935.2951583742 -5.605235311124168 -0.9178563703407501 QKIDDRDS(ph)DEEGASDR ddPTM_BT-474_Trastuzumab_2h_R1 5 QKIDDRDSDEEGASDR 16 2 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 QKIDDRDS(1)DEEGASDR;QKIDDRDS(1)DEEGASDR;QKIDDRDS(0.999)DEEGAS(0.001)DR;QKIDDRDS(1)DEEGASDR;QKIDDRDS(1)DEEGASDR 277.25 1.3137e-35 3806870000.0 2785840.0 2528190.0 2408920.0 2385410.0 2464640.0 3008550.0 2954950.0 2956710.0 4266860.0 2885760.0 True False 2770841.3469759184 2612339.2758268747 2748074.9972920096 2687402.661418401 2778497.294934215 2800576.019864924 2812007.7794947955 3177354.714069166 3215349.525994731 2701588.326176563 1.0256341871662462 0.9669642300846042 1.0172071631584363 0.9947491390080746 1.0284680563698239 1.0366405542729205 1.0408720500634174 1.176106175497854 1.1901700547193552 1.0 21.365376419771405 1.8953385519898327 4.471241135427426 1.1382771412816284 1.0116438451384113 0.4678992878117547 0.051754486571223814 0.1630874934441619 5.135289061313787 0.02306600049300168 0.013326494371265261 78.5847999590264 -1.8953385519898327 -0.12663329614321706 QKLDILDQER ddPTM_BT-474_Trastuzumab_2h_R1 2 QKLDILDQER 10 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 172.13 3.4760000000000007e-06 1233960000.0 1487650.0 1419330.0 1378510.0 1353040.0 1383770.0 1799740.0 1625600.0 1462490.0 1922780.0 1704210.0 False True 1479640.6576934531 1466571.541046895 1572592.2257762854 1524334.7252696818 1559984.9072526277 1675328.2099322588 1546963.5176049464 1571628.430173743 1448936.6329319812 1595445.8587524127 0.9274151482962164 0.9192236345730382 0.9856757076081553 0.9554286765090622 0.9777736415778381 1.050068982749632 0.9696120423758047 0.9850716159072336 0.9081703556302456 1.0 20.605528221103604 4.2396185061862655 24.9988865327486 0.979859051995592 0.9233193725163303 0.30507605794553105 0.033578431619363906 31.076191170250024 734263.9107612326 0.008236303786942296 0.02010439426795024 17362.749765935376 -4.2396185061862655 -0.05653967947926164 QKLDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QKLDPK 6 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 ; 96.964 0.037948 2513200000.0 1935410.0 1536070.0 1765620.0 1391660.0 1377750.0 2053310.0 1872520.0 1696880.0 2369840.0 2000010.0 False True 1924989.9676042672 1587197.1613760784 2014203.9489558458 1567844.0133098848 1553198.2959359642 1911369.5126718322 1781939.0538789465 1823509.8021820479 1785824.686229067 1872367.6495052914 1.0281046930675604 0.8476952492719261 1.0757523766702708 0.8373590591164793 0.8295370283428809 1.0208302376816036 0.9517036113873055 0.9739058473178852 0.9537788621272695 1.0 20.836432313027867 QKLEAQLTENNIVKEELALLDGSNVVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKLEAQLTENNIVKEELALLDGSNVVFK 28 2 O15212;A2AB88 O15212 PFDN6 Prefoldin subunit 6 0 153.06 2.1177e-08 89514000.0 258180.0 255500.0 225410.0 207280.0 218390.0 319420.0 281920.0 295690.0 448020.0 321310.0 False True 256789.98756649453 264004.1630469888 257145.76870115686 233521.62674710288 246200.67200105594 297339.2472338016 268282.45256101526 317755.8892833961 337611.474160427 300803.720712669 0.8536795587438332 0.8776625582340067 0.8548623271411768 0.7763255926284411 0.8184761525480913 0.9884826109508906 0.8918854192541108 1.056356246294307 1.1223646880449234 1.0 18.19846288660036 2.07827654970056 1.2177996963493265 1.06979367575045 0.8407729472687387 0.7216401874378863 0.05599684117535592 0.24135675241359827 0.6689878907557701 0.040095796949803655 0.019840328742657887 119.75028334902312 -2.07827654970056 -0.2290207284817113 QKLEEDAEMK ddPTM_BT-474_Trastuzumab_2h_R1 5 QKLEEDAEMK 10 1 P05455 P05455 SSB Lupus La protein 0 ;;;; 116.01 0.001046 4589500000.0 6997330.0 5241420.0 4385870.0 4655320.0 4587070.0 7412460.0 6938290.0 6466700.0 11415420.0 7024900.0 False True 6959657.152756444 5415877.496194698 5003362.373334567 5244683.034679285 5171206.174806012 6900054.087253981 6602658.405858275 6949277.99123724 8602242.699791135 6576564.867680518 1.0582511223995634 0.8235116060072891 0.7607865920889484 0.7974806209931032 0.7863080922715568 1.0491881743861753 1.0039676546499205 1.0566729183176404 1.3080145749136436 1.0 22.648902788173878 2.4222725421267297 1.5862518149538574 1.1104167764233481 0.8375513454115162 0.5166190580955956 0.1134571898440004 0.3091465662328437 1.5771927384809894 0.0551840879723655 0.040276175315614574 264.40675251646053 -2.4222725421267297 -0.2728654310118319 QKLPDGSEIPLPPILLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKLPDGSEIPLPPILLGR 18 1 Q96KP4;J3QKT2;A0A087WYZ1;J3KSV5;J3QRD0;J3QKQ0;J3QLU1;J3QR27;A0A087WVS2;J3QL02;J3KRD5;J3QQN6 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ; 138.05 2.5938e-06 503910000.0 754520.0 682790.0 657390.0 618830.0 609950.0 767010.0 733860.0 741740.0 986860.0 848370.0 False True 750457.7481550536 705516.2523947285 749944.7978636869 697173.8145499306 687623.5170431077 713988.4040473303 698360.388182557 797092.4052794029 743661.576246505 794226.3002739009 0.9448915855547052 0.888306333033067 0.9442457365174852 0.8778024780966077 0.86577782277667 0.8989735089370632 0.8792964775174492 1.0036086755179394 0.9363346139381712 1.0 19.599190609973697 1.7445903620325147 12.359835665511989 0.9768377681315558 0.8989624621302689 0.5958600443562003 0.030178142549441057 0.059421193905519476 65.86511040100821 0.013718509075197971 0.007523951460559295 55.53801609767508 -1.7445903620325147 -0.07787530600128689 QKLYTLQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKLYTLQDK 9 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 90.685 0.010272 439660000.0 483920.0 442740.0 510750.0 455400.0 423040.0 505680.0 535220.0 419960.0 826080.0 551630.0 False True 481314.62848856585 457476.3332580184 582659.1604814165 513053.59330678626 476911.6364454728 470723.5318426793 509329.3638610476 451299.54771366995 622503.6529048824 516424.50112579693 0.9320135420362664 0.8858532704407469 1.128256229538353 0.9934726028457942 0.9234876257919855 0.9115050328102361 0.9862610367066589 0.8738925955872433 1.2054107648801222 1.0 18.978197923598874 1.2438242341905594 24.999999616554724 1.1027053842026973 0.9542822220971087 0.34007693697255303 0.08266888120188348 129.8524780039276 616768.3310332475 0.05814774611996478 0.01983582819333584 17.53170822428331 -1.2438242341905594 -0.1484231621055886 QKNTNEEDDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKNTNEEDDEVR 12 1 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 ; 121.76 0.00021564 308840000.0 672630.0 661180.0 604780.0 616350.0 617340.0 754710.0 762110.0 664660.0 972440.0 776990.0 False True 669008.6348162178 683186.9766082492 689927.7671580053 694379.8468042107 695954.5897391457 702538.674096244 725243.8277570776 714260.3042750937 732795.1920284055 727401.8329853928 0.9197236032118336 0.9392153629917628 0.9484823049268559 0.9546028279229739 0.9567677151469612 0.9658192243108521 0.997033269466124 0.98193360517616 1.00741455245016 1.0 19.47239303569309 3.129292343367359 0.4189821835595408 1.005963567527945 0.9152727922605424 0.9086078143828861 0.008255359488143453 0.44186443090465166 0.14264182663239308 0.007742281308742458 0.017272051077415976 1346.7666188594176 -3.129292343367359 -0.09069077526740266 QKPELLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKPELLNK 8 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 85.676 0.019224 0.0 259800.0 284260.0 248680.0 242700.0 244960.0 295580.0 271810.0 251480.0 388340.0 329210.0 False True 258401.26566649321 293721.42226120154 283691.9824346914 273425.7951154081 276154.2040083281 275147.25032047764 258661.51188496588 270246.7145895652 292638.8104893986 308199.5359491391 0.8384219816253589 0.9530235707742051 0.9204815366156421 0.8871713394160672 0.8960240746562989 0.8927568611455796 0.8392663898353556 0.8768563319127219 0.9495108731691653 1.0 18.233505164049472 1.0324971976436266 3.8594771697828434 0.9993431814204212 0.8888773066719873 0.560270151123051 0.03224491899736949 0.14027661588348111 4.802307341109059 0.03167177757841229 0.00814450496623999 10.776982996468533 -1.0324971976436266 -0.11046587474843395 QKPQAER ddPTM_BT-474_Trastuzumab_2h_R1 8 QKPQAER 7 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ;;;;;;; 109.21 0.0064555 8662999000.0 2422643.0 2270707.0 2182415.0 2077728.0 2026900.0 1596498.0 2424838.0 2185445.0 2832030.0 2434240.0 False True 2409599.7592689423 2346286.10982363 2489680.0621087593 2340768.1517657493 2285013.7006224697 1486135.8510120509 2307539.3221592903 2348534.003364851 2134114.153757765 2278884.719142284 1.057359215685055 1.0295764810370551 1.092499344611786 1.0271551395749219 1.00268946534623 0.6521329659761798 1.012573958996834 1.0305628817629624 0.9364730632627144 1.0 21.11989651484519 2.9924025998162556 24.917326557951085 0.9322659688606103 1.0482307175165175 0.2556991040783577 0.10100839353076331 558.5796483780581 1831992.4281465325 0.031549090149125145 0.03621159191428333 982.658465298482 -2.9924025998162556 0.11596474865590722 QKS(ph)AEPS(ph)PTVMSTSLGSNLSELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKSAEPSPTVMSTSLGSNLSELDR 24 1 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 2 QKS(0.998)AEPS(0.98)PT(0.02)VMS(0.001)TSLGSNLSELDR;QKS(1)AEPS(0.564)PT(0.436)VMSTSLGSNLSELDR 97.804 0.00325 241030000.0 202020.0 172759.0 151107.0 144784.0 156652.0 221010.0 192648.0 158393.0 215680.0 168485.0 True False 200932.34676653214 178509.17887997915 172381.5521544111 163113.63955496202 176600.70365085124 205732.09890157936 183328.88025317297 170213.0899633567 162528.55396393247 157732.14305273414 1.2738833244619963 1.1317235372900416 1.092875230236232 1.034117944498026 1.1196240679479568 1.304313090026283 1.1622797782686636 1.0791274794665653 1.0304085826665954 1.0 17.267117160548068 1.4874347984215894 2.629883304925654 1.0150278214522481 1.1548543167148626 0.3752318905913613 0.07569296792484333 0.3169258363690507 4.358023749321609 0.06360169195166843 0.021754350661247573 30.720961101498652 -1.4874347984215894 0.13982649526261448 QKS(ph)DAEEDGGT(ph)VSQEEEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKSDAEEDGGTVSQEEEDR 19 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 2 QKS(1)DAEEDGGT(0.707)VS(0.293)QEEEDR 151.03 1.5976e-07 3318500000.0 4716000.0 4111700.0 4588900.0 3209800.0 4417500.0 6866500.0 4525800.0 4216100.0 5663300.0 4773000.0 True False 4690609.5799968615 4248555.448924863 5234977.232566163 3616160.350891796 4980042.440426145 6391835.017002371 4306869.763765049 4530726.790922005 4267655.599332054 4468383.053629115 1.0497330966706757 0.9508037690444391 1.1715596379577258 0.8092771607740379 1.1145066080181893 1.4304581635656939 0.9638541978327286 1.0139521917760062 0.9550782795727338 1.0 22.091321435960815 QKS(ph)DAEEDGGTVS(ph)QEEEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 QKSDAEEDGGTVSQEEEDR 19 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 2 QKS(1)DAEEDGGT(0.179)VS(0.821)QEEEDR;QKS(1)DAEEDGGT(0.002)VS(0.998)QEEEDR;QKS(1)DAEEDGGT(0.465)VS(0.535)QEEEDR 194.99 1.0814e-15 3707370000.0 1351140.0 1187130.0 1334490.0 936870.0 1317070.0 1957400.0 1200170.0 1235680.0 1657610.0 1332180.0 True False 1343865.612365766 1226642.9044147613 1522374.5924049816 1055477.6459405557 1484791.0576145009 1822089.5452239802 1142113.1920053705 1327892.7162558995 1249114.226336024 1247159.1318633212 1.0775414123440368 0.9835496313787099 1.2206738927777998 0.8463055106397022 1.19053857657775 1.4609920247319865 0.9157718231986911 1.0647339880933704 1.0015676383412129 1.0 20.250214127597477 QKS(ph)DAEEDGGTVS(ph)QEEEDRKPK ddPTM_BT-474_Trastuzumab_2h_R1 7 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 2 QKS(1)DAEEDGGT(0.016)VS(0.984)QEEEDRKPK;QKS(1)DAEEDGGT(0.02)VS(0.98)QEEEDRKPK;QKS(1)DAEEDGGT(0.091)VS(0.909)QEEEDRKPK;QKS(1)DAEEDGGT(0.015)VS(0.985)QEEEDRKPK;QKS(1)DAEEDGGT(0.211)VS(0.789)QEEEDRKPK;QKS(1)DAEEDGGT(0.047)VS(0.953)QEEEDRKPK;QKS(1)DAEEDGGT(0.042)VS(0.958)QEEEDRKPK 207.6 3.7843000000000005e-23 20665340000.0 5141060.0 3206880.0 3351480.0 2373835.0 3673270.0 7019350.0 5307030.0 4521510.0 9195210.0 4561470.0 True False 5113381.104185468 3313619.0622001 3823339.252413617 2674362.2676052144 4141039.1613229513 6534118.856272566 5050308.684076632 4858928.035962558 6929173.705001347 4270353.079329053 1.1974141269341758 0.7759590367925098 0.8953215767850115 0.626262563756298 0.9697182140202751 1.530112085555977 1.1826442896544105 1.1378281715117526 1.6226231359047343 1.0 22.025923928335768 2.9395394782770734 7.73005757088709 1.2781499966196583 0.8595887212608437 0.46755415795117117 0.21569587652461208 0.25773970652064143 29.873259317563964 0.06349700008065502 0.06772495100314066 870.0405179741792 -2.9395394782770734 -0.4185612753588146 QKS(ph)DAEEDGGTVSQEEEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKSDAEEDGGTVSQEEEDR 19 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 QKS(1)DAEEDGGTVSQEEEDR 101.04 0.00032691 445880000.0 78868.0 69206.0 70635.0 48213.0 85377.0 110810.0 68948.0 74355.0 86624.0 72006.0 True False 78443.38345105856 71509.47987408964 80579.7940295739 54316.76085660975 96249.25488087442 103149.96551868234 65612.72183306218 79903.74766703958 65276.67590213127 67410.51543256188 1.1636668692962906 1.0608060094960763 1.1953594111023627 0.8057609485414594 1.4278077279673538 1.5301761877473632 0.9733306652832491 1.1853306142863729 0.9683455983574948 1.0 16.040686035928584 1.3041664505331285 2.026399786673388 0.9792805246714493 1.1725448616314191 0.11180323055330144 0.1965126334484228 0.751135405569724 5.2837989187404695 0.18283131760717963 0.05429166848151387 20.144961908605463 -1.3041664505331285 0.1932643369599698 QKS(ph)DAEEDGGTVSQEEEDRKPK ddPTM_BT-474_Trastuzumab_2h_R1 5 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(0.999)DAEEDGGT(0.001)VSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK 175.76 6.1700000000000006e-12 17584470000.0 2776930.0 2011637.0 2198480.0 1436809.0 2288530.0 4205180.0 2788140.0 2694000.0 5495520.0 2897180.0 True False 2761979.3174259258 2078593.1214847527 2508006.8744692765 1618708.8720806555 2579960.730319965 3914485.8045289465 2653267.0164708765 2895039.959854815 4141222.73219524 2712279.4919994115 1.0183240059046705 0.7663639118372996 0.924686000048044 0.5968075476201723 0.9512149238049561 1.4432457333677307 0.9782424799130739 1.0673826087593496 1.5268421799489602 1.0 21.371074420713413 2.9898604971526956 24.374397502210694 1.1788710206666062 0.8223510278847171 0.4570013071912 0.19456014727906712 325.95126401555734 783559.1473374639 0.05606739281798239 0.06331048190278665 976.9233659852968 -2.9898604971526956 -0.35651999278188906 QKS(ph)EEPSVSIPFLQTALLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKSEEPSVSIPFLQTALLR 19 1 Q5SW79;H0Y2V6;H0YB66 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 QKS(0.998)EEPS(0.002)VSIPFLQTALLR;QKS(1)EEPSVSIPFLQTALLR 152.88 3.1055e-08 1406990000.0 1288480.0 891970.0 783950.0 1002220.0 843490.0 1147460.0 951230.0 1033930.0 1588650.0 1192480.0 True False 1281542.9668435853 921658.6822427484 894323.3457844472 1129100.9492400677 950903.4517430792 1068138.7910302975 905215.3708485203 1111087.1067901584 1197148.4943193675 1116374.9054665088 1.1479503530295285 0.8255816909979782 0.8010958875958689 1.011399435540197 0.8517778813253755 0.9567921903295968 0.8108524890840775 0.9952634203344612 1.07235346159909 1.0 20.090390169455336 1.5373008823524383 6.599249039535783 1.0353008463613682 0.9095634379511346 0.19455019453775757 0.10197586452964795 0.1861969930538499 16.050872535091735 0.05345604969127361 0.024554104147348252 34.45885815413404 -1.5373008823524383 -0.12573740841023362 QKS(ph)FSEDVISHK ddPTM_BT-474_Trastuzumab_2h_R1 2 QKSFSEDVISHK 12 1 F6QMI7;E9PHM6;F8W9J4;Q03001-8;Q03001-14;Q03001;A0A494C1D7;H0YC82;Q03001-10 F6QMI7 DST Dystonin 1 QKS(0.987)FS(0.013)EDVISHK;QKS(0.996)FS(0.004)EDVISHK 129.05 0.00014597 524810000.0 456940.0 503930.0 449870.0 467420.0 442260.0 573910.0 636000.0 501150.0 610100.0 590570.0 True False 454479.88581080706 520703.0054178821 513207.7856598622 526595.3240743472 498579.18951960775 534236.9525388235 605234.2502440616 538548.3577881365 459749.0299211569 552879.3169875852 0.822023671073614 0.9418022874412834 0.928245586136452 0.9524598007094047 0.9017866543392566 0.9662813133427809 1.0946950476312574 0.9740794080025778 0.8315540404479997 1.0 19.07660507644388 2.6383678462491393 5.349190585932778 0.9831890840584946 0.9147112106135766 0.17267010489693213 0.06855205575192758 0.4070574443686836 17.536462166093962 0.02291333398764042 0.021556408575745162 434.8784090576163 -2.6383678462491393 -0.06847787344491796 QKS(ph)LDSDLSDGPVTVQEFMEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKSLDSDLSDGPVTVQEFMEVK 22 1 Q14161-3;Q14161;Q14161-6;R4GNG3;Q14161-9;Q14161-5;Q14161-11;Q14161-7;Q14161-2 Q14161-3 GIT2 ARF GTPase-activating protein GIT2 1 QKS(0.938)LDS(0.062)DLSDGPVTVQEFMEVK 228.62 2.112e-26 83472000.0 141010.0 83736.0 86678.0 108290.0 73757.0 117250.0 115330.0 99207.0 172870.0 127970.0 True False 140250.8178276838 86523.10214051916 98881.50898131795 121999.5028967762 83149.51675801042 109144.7834768119 109751.0472966157 106610.33010293853 130268.50483932215 119802.84503937107 1.170680193626394 0.7222124158410836 0.8253686208271791 1.018335606776978 0.6940529394830717 0.9110366572759054 0.9160971699841349 0.8898814553853287 1.0873573561338359 1.0 16.870302643627408 1.2502221988228783 23.51379506997761 1.043678633278515 0.8850927407611611 0.17178158736751226 0.1309121801620921 143.1205345888288 288589.318663241 0.08285349042468744 0.0296141315342623 17.79189466938775 -1.2502221988228783 -0.158585892517354 QKS(ph)PAQSDSTTQR ddPTM_BT-474_Trastuzumab_2h_R1 5 QKSPAQSDSTTQR 13 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 QKS(1)PAQSDSTTQR;QKS(0.827)PAQS(0.061)DS(0.013)T(0.079)T(0.02)QR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR 169.25 1.7451e-05 1912480000.0 591918.0 507532.0 531696.0 475372.0 581516.0 689218.0 654841.0 568675.0 743921.0 714431.0 True False 588731.1792562723 524424.8958104274 606554.1752155197 535554.0464590106 655568.6156846294 641573.9819046586 623163.8390944513 611112.4161731384 560591.6375806868 668835.4019248474 0.8802332794615201 0.7840866292381956 0.9068810853461285 0.8007262248943982 0.980164348056282 0.9592404649309338 0.931714794553402 0.9136962762653001 0.8381608329453781 1.0 19.351291686732544 3.240625534466029 24.999999199883565 0.9322719771609639 0.8433392409792029 0.4343492765399958 0.052474596588899254 54.09955066348111 654975.5081635551 0.014380521785485028 0.018543238873555665 1740.3056672913253 -3.240625534466029 -0.08893273618176101 QKS(ph)PEIHR ddPTM_BT-474_Trastuzumab_2h_R1 28 QKSPEIHR 8 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR 149.96 0.00030006 143129379000.0 63026527.699999996 55775626.2 48860307.9 50683066.1 51083472.4 58256021.0 56642716.9 58013420.3 75179742.1 56040788.699999996 True False 62687199.87776867 57632084.20098896 55739414.55091042 57099537.0716082 57588649.81467741 54228919.38819283 53902692.287355535 62342676.30896531 56652702.01638705 52464217.586232975 1.1948562803730498 1.0985026910248268 1.0624272526183043 1.0883520177872923 1.0976748051187772 1.0336362931374952 1.0274182055371017 1.188289450929018 1.079835068983344 1.0 25.64483045439474 QKS(ph)PEIHRR ddPTM_BT-474_Trastuzumab_2h_R1 10 QKSPEIHRR 9 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR 122.86 0.00029945 21649250000.0 7501931.0 8010809.0 6988061.0 7710395.0 7903494.0 8236376.0 9060748.0 8448223.0 12362590.0 8935520.0 True False 7461541.437038898 8277443.934928706 7971919.247484917 8686530.216435393 8909957.113220902 7667014.71346363 8622445.00382135 9078672.299467154 9315995.3447189 8365247.463516447 0.8919690026602436 0.9895037739205349 0.9529806837458232 1.0384068438286094 1.0651157843303634 0.9165317280692489 1.0307459571789868 1.0852843671466008 1.1136544836657818 1.0 22.995976788500805 7.2285648203138395 0.35606238946863517 1.055658460947153 9.151546259483086e-09 0.40838433943154784 0.05278797627897962 36.642344407593164 0.8653499145085491 0.04499047610239566 23.810099133548597 16926408.594909582 -7.2285648203138395 -1.055658451795607 QKS(ph)SPVNNHHSPGQTPTLGQPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKSSPVNNHHSPGQTPTLGQPEAR 24 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 Q5SW79 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 QKS(0.5)S(0.5)PVNNHHSPGQTPTLGQPEAR 134.07 2.2706e-05 34529000.0 3963.4 6475.1 10369.0 9657.2 5619.9 10391.0 8180.1 6221.3 9653.1 10427.0 True False 3942.061494775138 6690.619789219397 11828.865071036327 10879.80052982498 6335.560953242984 9672.694627782952 7784.3973119834 6685.564997121286 7274.222849912999 9761.539932996173 0.4038360260608159 0.6854061792651809 1.2117826851327151 1.1145578058897077 0.6490329391397951 0.9908984334620294 0.7974558691985071 0.6848883519415406 0.7451921417976799 1.0 13.252893042947075 -0.5015553630256679 9.17882988568892 0.999987379809565 0.816923168696249 0.05900626054129121 0.22668263096070224 0.0 0.0 0.22543600117484716 0.053135775051437656 0.315097267466157 0.5015553630256679 -0.18306421111331594 QKSDAEEDGGTVS(ph)QEEEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKSDAEEDGGTVSQEEEDR 19 1 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 QKSDAEEDGGT(0.01)VS(0.99)QEEEDR;QKSDAEEDGGT(0.002)VS(0.998)QEEEDR 152.15 3.5474000000000004e-08 2444300000.0 1688890.0 1708040.0 1932620.0 1185990.0 1884430.0 2441430.0 1579670.0 1683330.0 2000250.0 1952070.0 True False 1679797.2038933174 1764891.078868016 2204716.0973658264 1336136.2123977058 2124400.990608316 2272659.690608039 1503255.3271745867 1808948.6323765435 1507315.1894767978 1827487.22134879 0.9191841038721633 0.9657474253447449 1.2064194329843905 0.731132998791401 1.162471050845645 1.2435981297481722 0.8225804862619496 0.9898556943349984 0.8248020406754544 1.0 20.80142988753407 QKSDAEEDGGTVS(ph)QEEEDRKPK ddPTM_BT-474_Trastuzumab_2h_R1 5 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 QKSDAEEDGGT(0.171)VS(0.829)QEEEDRKPK;QKSDAEEDGGT(0.001)VS(0.999)QEEEDRKPK;QKSDAEEDGGT(0.004)VS(0.996)QEEEDRKPK;QKSDAEEDGGT(0.038)VS(0.962)QEEEDRKPK;QKSDAEEDGGT(0.002)VS(0.998)QEEEDRKPK 247.96 2.2727e-30 5285450000.0 2973370.0 2193310.0 2345390.0 1681300.0 2591230.0 4530530.0 3230240.0 2920360.0 6029360.0 3220580.0 True False 2957361.7062924653 2266312.9974661055 2675600.5255046673 1894152.4076124267 2921207.7810764997 4217345.124820472 3073980.9504848644 3138292.092487605 4543505.01728475 3015039.8271227432 0.9808698643674899 0.7516693401787834 0.8874179708790104 0.6282346224991724 0.9688786711199807 1.3987692921605914 1.0195490364113593 1.0408791500052859 1.5069469319815332 1.0 21.523745628833606 2.995713683098556 24.65488344879368 1.1698801463162407 0.8112984598365629 0.5136444959729564 0.17484875307355505 127.61960644252513 734076.0394560281 0.04965578945394535 0.057985701721329566 990.1789353565528 -2.995713683098556 -0.3585816864796778 QKSPEIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKSPEIHR 8 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 72.643 0.041609 602540000.0 663640.0 622370.0 591370.0 556100.0 612790.0 546430.0 663030.0 651160.0 857470.0 686800.0 False True 660067.0359773363 643085.20921939 674629.7557198143 626502.202981782 690825.1742091078 508656.58025786164 630956.7058794344 699752.8657234818 646158.0080093337 642967.836000937 1.0265941762853195 1.0001825491290248 1.0492433959306655 0.9743912026430961 1.0744319319389732 0.7911073490418272 0.9813192364392468 1.088317061201273 1.0049616354501316 1.0 19.29438704402338 1.7773466228209116 24.999999999927873 1.0402950047301116 0.9838909773712325 0.06757198430252398 0.07549716666987064 123.86796233736969 79872.4041440387 0.035235701838990836 0.019567925436044614 59.88893950807501 -1.7773466228209116 -0.05640402735887906 QKT(ph)VDIDDAQILPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKTVDIDDAQILPR 14 1 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 QKT(1)VDIDDAQILPR 141.07 1.5801e-05 199480000.0 111010.0 62433.0 59941.0 71952.0 45122.0 64092.0 53331.0 63120.0 100400.0 79943.0 True False 110412.33449437059 64511.04466345456 68380.17178348803 81061.11582259522 50868.01924095266 59661.47089633963 50751.175785795655 67830.3349168656 75657.76529107385 74840.96929735421 1.4752926843542886 0.8619750020492474 0.913672984536097 1.08311151744344 0.6796814594803885 0.7971766193900537 0.6781202363127307 0.906326248225964 1.0109137548776845 1.0 16.191540623208724 4.738973827300595 24.70494244458752 0.8691050496474715 1.4752928756347612 0.6585607216636393 0.12806042270704582 17.253301811457067 1031129.8103174884 0.03094924746038408 0.18238086001258808 54824.39240778239 -4.738973827300595 0.6061878259872897 QKTEDEVLTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 QKTEDEVLTSK 11 1 Q9BQ61 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 77.527 0.029525 191130000.0 473900.0 576060.0 545850.0 556120.0 557430.0 604680.0 656870.0 561100.0 694750.0 659590.0 False True 471348.5750552403 595233.8088643766 622700.9353867476 626524.7349797315 628415.4063535366 562879.8948636132 625094.6886129188 602972.1312080676 523538.17167304293 617494.40149659 0.7633244510603765 0.963950130433148 1.008431710275492 1.014624154423514 1.017685998173389 0.9115546529642854 1.012308268865124 0.9764819401547197 0.8478427827105313 1.0 19.23606653102122 4.736431853379009 5.041884616629103 0.9762726838349319 0.7533879339347788 0.5955236816139564 0.051740304165817805 0.10743758729740785 8.737799403175373 0.012108404695849315 0.08348161232976871 54504.43642177 -4.736431853379009 -0.22288474990015317 QKTGETSR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKTGETSR 8 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 69.27600000000001 0.049557 34635000.0 59690.0 65587.0 67563.0 70436.0 69901.0 47502.0 77040.0 68787.0 107030.0 95416.0 False True 59368.63567218241 67770.02364682125 77075.28313187647 79353.19037803423 78802.47801431305 44218.298547680315 73313.28087862016 73920.2352333084 80653.89062852229 89326.46919025244 0.6646253480111906 0.7586779625474832 0.8628493192506835 0.8883502403864574 0.8821850760324489 0.49501898987523785 0.8207341177056209 0.8275289049639811 0.902911436662085 1.0 16.446800117171193 1.161958129138171 1.6313995807920043 0.9950459293850209 0.7714361107169702 0.3147110619562419 0.11176436305583266 0.45195558034510264 2.2821664555069794 0.10773617566924425 0.03188086226706221 14.519716244803682 -1.161958129138171 -0.22360981866805074 QKVDDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QKVDDDR 7 1 Q13618;Q13618-2;Q13618-3;A0A087WTG3 Q13618 CUL3 Cullin-3 0 74.127 0.054929 0.0 430830.0 415140.0 379280.0 337890.0 366470.0 301540.0 415150.0 411350.0 569900.0 425570.0 False True 428510.45914971275 428957.6839425704 432679.32723914133 380666.8393553579 413137.7822621319 280695.24954880914 395067.6084729908 442047.02579297597 429455.78126875527 398409.75825119234 1.0755521175752485 1.0766746422714828 1.0860158876087127 0.9554656518110489 1.0369670262987227 0.7045390925686974 0.9916112753039188 1.1095286112803264 1.0779248559418788 1.0 18.603893458208752 3.748136917021608 23.293405117128838 0.9858020809638133 1.0791402795636134 0.15595195866237022 0.10331671674175591 587.6037976851865 1429275.9159623624 0.029135678451482894 0.051579585473889716 5599.341002281561 -3.748136917021608 0.09333819859980008 QKVDLQSLPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKVDLQSLPTR 11 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 ; 168.59 1.6312e-05 1079100000.0 1154190.0 1198640.0 1093610.0 1020900.0 975200.0 1231860.0 1179400.0 1059890.0 1433390.0 1231520.0 False True 1147975.9692825654 1238536.0078068178 1247580.782171476 1150145.8353247656 1099385.9395367454 1146704.4176865271 1122347.9162544745 1138984.373812367 1080150.2409419564 1152923.339242682 0.9957088474214023 1.0742570348349196 1.082102113563744 0.9975909032080651 0.9535637818373044 0.9946059539741472 0.9734800901781626 0.9879098939575018 0.9368794994222878 1.0 20.13686515710024 3.5617224238830385 5.203131221488999 0.9755652647954483 1.052400452292508 0.6008973166998792 0.027751297871344265 0.14028710712952505 6.368483400018331 0.0071959449956578905 0.011190336990933294 3645.2089161472572 -3.5617224238830385 0.07683518749705964 QKVDSLLENLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QKVDSLLENLEK 12 1 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;G3V576;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4;A0A0G2JNQ3;O60812;B2RXH8;A0A0G2JPF8;P0DMR1;B7ZW38 B4DY08;P07910;P07910-2 HNRNPC;HNRNPCL1;HNRNPCL2;HNRNPCL4;HNRNPCL3 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 3 0 ; 234.52 4.6021e-16 14200100000.0 16183300.0 11509200.0 10422600.0 9277100.0 12419000.0 17167200.0 12928700.0 14346100.0 20669200.0 15001700.0 False True 16096170.910933653 11892276.764541673 11890011.485136785 10451579.908797517 14000486.036819978 15980471.871241981 12303289.388569808 15416678.83001972 15575552.613090273 14044278.662398448 1.1461016473582837 0.8467702080265287 0.8466089124940673 0.7441877336698062 0.9968818173840627 1.1378634855791785 0.8760356928483702 1.0977195198565575 1.1090318689554055 1.0 23.743479191352574 3.0153628130318677 24.799129447335986 1.0427524799890688 0.8865908446602052 0.26268450878158833 0.11700061480972887 279.6637609481206 451438.32064724324 0.03345208537095871 0.03997086078502491 1036.0072939177264 -3.0153628130318677 -0.15616163532886362 QKWDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 QKWDQK 6 1 O15371-2;O15371;B0QYA5;B0QYA6 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ; 79.597 0.060858 837500000.0 951890.0 873100.0 871410.0 851510.0 834780.0 982690.0 994530.0 923520.0 1332370.0 1010060.0 False True 946765.1300049215 902160.6056999047 994096.9535684993 959311.078692713 941084.2848712925 914758.9533034391 946420.784426456 992437.7519395382 1004025.2663433083 945597.1060441283 1.0012352237050297 0.9540644741120892 1.0512901818484495 1.0145029765435267 0.9952275433755133 0.9673876405251497 1.000871066944963 1.0495355216254478 1.0617896987265667 1.0 19.85086609465808 1.7732156916748736 6.923158198117552 1.0415235719345333 0.9974452587390703 0.279686944413295 0.028645387884564447 0.2182703297905045 26.922140730001473 0.013587012212318367 0.007543453347224115 59.321987315216 -1.7732156916748736 -0.04407831319546296 QKYNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QKYNVR 6 1 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KSS0;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ; 94.151 0.040865 1129010000.0 1046020.0 957880.0 868790.0 823510.0 536150.0 712320.0 759500.0 687820.0 1208580.0 920570.0 False True 1040388.3445437469 989762.4567493115 991108.0803419482 927766.2815636183 604425.5244899783 663078.9950209178 722760.0834282454 739148.6210791898 910741.65314229 861818.4344603714 1.2072013117185028 1.1484582101902385 1.1500195873189132 1.0765217410840606 0.7013374283046522 0.7693952328092234 0.8386454205760897 0.8576616506724047 1.0567674311962842 1.0 19.717024432736718 3.4094817091658216 6.1457817001797865 0.8570654872472894 1.158442839256424 0.660976898305712 0.0976849971634079 0.11785161541438681 8.053466602201716 0.027755814483149916 0.037863481609241176 2567.330079636629 -3.4094817091658216 0.30137735200913474 QKYPEQQGR ddPTM_BT-474_Trastuzumab_2h_R1 3 QKYPEQQGR 9 1 A0A0G2JKR7;P28702;P28702-3 A0A0G2JKR7 RXRB Retinoic acid receptor RXR-beta 0 ;; 98.943 0.0051732 136283000.0 168532.0 182770.0 170923.0 172944.0 185560.0 213538.0 221764.0 197269.0 252097.0 215681.0 False True 167624.6424376654 188853.38896320207 194987.47271065137 194838.692667652 209189.96609971137 198776.6206743835 211036.4280992515 211990.21449168512 189971.0722767316 201916.0539262056 0.8301699601306951 0.9353064567724885 0.9656858328952564 0.9649489918164695 1.0360244370473095 0.9844517897870099 1.0451691383409223 1.0498928161955925 0.9408418428490112 1.0 17.62339609535365 6.037649540399174 0.6337491167881785 1.01633826186472 4.855079088221887e-19 0.7238329563834645 0.032766337720254106 7.304961273962934 0.6207604514736393 0.013357421479265566 7.802296403328396 1090559.9396947725 -6.037649540399174 -1.01633826186472 QLAAEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 QLAAEEER 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 118.33 0.0044354 356670000.0 391700.0 431320.0 432160.0 466450.0 409350.0 445630.0 437680.0 351070.0 433550.0 449840.0 False True 389591.130721961 445676.22546155436 493004.37159794226 525502.5221738039 461478.2960924597 414824.6470001847 416507.7463000328 377268.6260973382 326707.4117723614 421130.8260725998 0.9251071320407174 1.0582844994223317 1.1706679755448537 1.247836752000698 1.0958074487116845 0.9850256056265804 0.989022224243993 0.8958466175836293 0.7757860302442915 1.0 18.68390895667469 2.2751047080099465 1.5301914820674956 0.8853527565374809 1.1069727331801102 0.4633102415645983 0.09499545469205979 0.3510874357988086 1.633983979076744 0.05500743877164044 0.03425908144062197 188.41032903468133 -2.2751047080099465 0.22161997664262933 QLAEAHAQAK ddPTM_BT-474_Trastuzumab_2h_R1 3 QLAEAHAQAK 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 141.88 3.6738e-05 607310000.0 2078130.0 2143000.0 2090390.0 1993070.0 1830030.0 2245490.0 2332710.0 1907050.0 2740720.0 2245990.0 False True 2066941.5789819462 2214328.4595291447 2384698.742004398 2245392.4576459313 2063073.473062377 2090264.5616148948 2219867.90548243 2049363.7548036834 2065306.2797664546 2102648.9953112174 0.9830178900953528 1.053113698228742 1.1341401952119134 1.0678874422944693 0.9811782554591415 0.994110080320615 1.0557482063970753 0.9746580429608761 0.9822401572359273 1.0 21.003776603897578 3.2463582615206583 24.848465341521898 0.9990082592792174 1.064409413935612 0.3588711365819427 0.040078751364748866 180.1027804893997 573923.4494432834 0.011608345869084234 0.015434182782193282 1763.430148829977 -3.2463582615206583 0.06540115465639451 QLAEDFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 QLAEDFLR 8 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;; 134.48 0.0020353 602650000.0 1091450.0 1406110.0 1497160.0 1306350.0 929260.0 1081180.0 1285840.0 959480.0 1577130.0 1157530.0 False True 1085573.7544714955 1452911.521338555 1707947.1144519965 1471733.7760569165 1047595.7528444579 1006440.5714239606 1223639.0068141874 1031081.2697407196 1188467.4439592767 1083655.4443887093 1.0017702214229804 1.3407504468896416 1.5760979408131435 1.3581196714119057 0.9667240249371029 0.9287459188577181 1.12917718740798 0.9514844179298644 1.096720779758267 1.0 20.047474684235787 3.2411225656892917 24.999976125697696 1.0099899688315588 1.339075999288507 0.5240342071519521 0.14284367658419916 51.62761820650923 503786.96864564193 0.04106970942287082 0.05314897343757725 1742.2985118916088 -3.2411225656892917 0.3290860304569483 QLAPIWDK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLAPIWDK 8 0 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 ; 138.1 0.0016748000000000002 1128610000.0 2182200.0 2384400.0 2290100.0 2140300.0 1812830.0 2181200.0 2395100.0 2188900.0 2825000.0 2239700.0 False True 2170451.277665214 2463763.3125997595 2612526.1740939617 2411261.7605500976 2043683.1550147648 2030418.777992514 2279239.8628294803 2352246.833008982 2128816.6030605943 2096760.4284963608 1.0351450972497125 1.175033293797225 1.2459822012033437 1.1499939276702553 0.9746860572337017 0.9683599282005613 1.087029224632964 1.1218481620696346 1.0152884297741263 1.0 20.999730600827878 3.3317268959155593 7.942430258098911 1.041312757055268 1.1611554441399299 0.4451401709351511 0.06635971184804837 0.2567542925279452 19.215510604042947 0.020045851529572143 0.027148618813226746 2146.4802454175433 -3.3317268959155593 0.11984268708466184 QLCAEHGISPEGIVEEFATEGTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLCAEHGISPEGIVEEFATEGTDR 24 0 P23258;K7EIS0;Q9NRH3;K7EKE5 P23258 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma chain;Tubulin gamma-2 chain 0 ;; 138.35 7.2271000000000015e-06 84268000.0 49202.0 53470.0 48412.0 50933.0 53964.0 53755.0 48882.0 44845.0 57895.0 50776.0 False True 48937.10189885612 55249.716626702466 55227.98879535254 57381.112577721884 60835.9955303127 50039.04337565904 46517.390912626106 48191.56161829588 43627.55300325418 47535.43220847934 1.0294868401370452 1.1622849327295495 1.1618278456612203 1.2071229798871226 1.27980314270627 1.0526683160510553 0.9785835270964122 1.0138029545400766 0.9177901825298209 1.0 15.536715657529303 2.5117733824995914 5.767480016647164 0.9856156500511509 1.170016454899229 0.6752763194470648 0.06248191913599671 0.11727678870909232 11.186110127045493 0.02142048884973655 0.01955631983573015 324.91770910764103 -2.5117733824995914 0.18440080484807797 QLCSFEIYEVPWEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLCSFEIYEVPWEDR 15 0 P01036 P01036 CST4 Cystatin-S 0 144.27 9.925e-06 54891000.0 52041.0 47788.0 44746.0 41746.0 46749.0 55382.0 56767.0 40698.0 53152.0 55534.0 False True 51760.817038298635 49378.59469154395 51045.84786079577 47031.039319686184 52702.20804696815 51553.57269520504 54020.96333900097 43735.091420256584 40053.401800310334 51989.772574950555 0.9955961427543879 0.9497751624198351 0.9818440307121178 0.9046209858272478 1.0137033773515844 0.9916098905969116 1.0390690449957665 0.8412249035559121 0.7704092519844693 1.0 15.66594022382988 1.6805645159597402 7.601569663655456 0.8549267128561748 0.979400601719544 0.3863141648430025 0.06337414862796989 0.10826526851641703 11.72265730957555 0.02973611634537982 0.015481117439762495 47.92526422716178 -1.6805645159597402 0.12447388886336919 QLDDKDEEINQQSQLVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLDDKDEEINQQSQLVEK 18 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ; 328.15 7.338999999999998e-75 1602680000.0 1286110.0 900530.0 820540.0 737560.0 769190.0 1219470.0 1173660.0 1154150.0 1622990.0 1125260.0 False True 1279185.7266602546 930503.5966681201 936064.8997384652 830935.0203762695 867141.7871536812 1135170.9092236042 1116885.5819834047 1240278.5336549482 1223025.8614517914 1053444.9434164467 1.2142881644214873 0.8832958974110092 0.8885750561417058 0.7887787829532399 0.8231486539215213 1.077579721956907 1.0602220732686918 1.1773548692849367 1.1609774854349517 1.0 20.006683485343977 2.600930726659293 5.171969353198034 1.1136337086707346 0.9092021160105745 0.3540106052955644 0.11766096810737244 0.23552489530442766 8.977278228330244 0.03950628794660216 0.037008400591350375 398.961259868993 -2.600930726659293 -0.2044315926601601 QLDDLKVELSQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLDDLKVELSQLR 13 1 P42766;F2Z388 P42766 RPL35 60S ribosomal protein L35 0 ;; 201.76 9.0563e-08 4610520000.0 4864740.0 4873220.0 4935620.0 4725790.0 4301340.0 5394940.0 5645890.0 5207000.0 7422720.0 6045920.0 False True 4838548.780363427 5035422.1817763075 5630512.394821899 5324074.5294538345 4849090.152960405 5022000.496122741 5372776.731305733 5595572.780610255 5593490.115352188 5660064.209427471 0.8548575778176299 0.8896404696945395 0.9947788905722393 0.9406385391504909 0.8567199900106613 0.8872691740418839 0.9492430708395094 0.9886058838855929 0.9882379260001333 1.0 22.43238698882959 1.9486682446620838 3.0040298809926327 0.9906417059870344 0.9071816111655505 0.5093425327792027 0.0387653545662472 0.24981239094013338 4.1660136374291925 0.021484923413308463 0.011940968506678893 88.85221210369697 -1.9486682446620838 -0.08346009482148387 QLDMILDEQRR ddPTM_BT-474_Trastuzumab_2h_R1 4 QLDMILDEQRR 11 1 P49257 P49257 LMAN1 Protein ERGIC-53 0 ;;; 174.21 1.8076e-05 1285720000.0 842270.0 1210500.0 1271800.0 1291850.0 1117550.0 1163380.0 1178820.0 832570.0 1545900.0 1225630.0 False True 837735.3119049934 1250790.760737298 1450858.3853162327 1455398.0775436363 1259863.368262193 1082958.2789019484 1121795.9730702906 894700.6011047966 1164933.6589987164 1147409.2440853657 0.7301103039071097 1.0900999509850915 1.2644646126001498 1.2684210843218173 1.098006988140023 0.9438291389792723 0.9776773011485609 0.7797571840359272 1.0152730292209908 1.0 20.129948615524473 2.7014662686310555 3.769576272185303 0.9167512561176285 1.1110116160332881 0.17418352148261718 0.1526416292763078 0.339457385653553 10.382011902832671 0.05304047024372437 0.05152512965396399 502.88220580088864 -2.7014662686310555 0.1942603599156596 QLEAIDQLHLEYAK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLEAIDQLHLEYAK 14 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 ;;; 224.59 3.0908e-12 3285600000.0 4339840.0 3549030.0 3412620.0 2715560.0 2792500.0 3794720.0 3392100.0 3405940.0 3934030.0 3754670.0 False True 4316474.783641557 3667157.3181160623 3893087.2329752124 3059349.617567363 3148108.322555743 3532399.93821004 3228011.1639196184 3660108.537812879 2964541.019801224 3515043.746065284 1.2280003025491188 1.0432750153454144 1.1075501513553303 0.8703589026429552 0.8956099980490183 1.0049376888023611 0.9183416756997781 1.0412696973999198 0.8433866642825458 1.0 21.745111213625886 4.630440672390143 1.129597426158029 0.9500072261496972 1.308597894201114 0.5887799820367802 0.07193258196450047 0.9767518925899423 1.1881343486872493 0.020830735773596606 0.39817537036193246 42701.25826038441 -4.630440672390143 0.3585906680514168 QLEDLVEELSFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLEDLVEELSFSR 13 0 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A0A0MRE9;A0A087WX84;Q99996-4 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 0 74.46 0.079211 7441400.0 12415.0 13282.0 11929.0 11862.0 13059.0 13456.0 13297.0 12736.0 15132.0 12063.0 False True 12348.159019436178 13724.083340861454 13608.49951127326 13363.727983761733 14721.986243242784 12525.818392016883 12653.773310527178 13686.424992097596 11402.921358411642 11293.129012346108 1.0934222929656314 1.2152595906641754 1.20502470983869 1.1833503335658313 1.303623311763118 1.1091539269872104 1.1204842605351943 1.211924965803104 1.0097220483309368 1.0 13.46315765176804 1.2317670746876552 24.941307725832598 1.004860857517359 1.1825548739148142 0.5889958859993714 0.058589790014211544 110.89535334158475 407114.3952670808 0.05089711498934332 0.013851008497464418 17.0516761056856 -1.2317670746876552 0.1776940163974552 QLEDWLHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLEDWLHSK 9 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;H7C0P8 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 152.07 8.1351e-05 582310000.0 1489610.0 1613900.0 1562500.0 1532260.0 1403140.0 1808790.0 1714340.0 1596890.0 2035950.0 1771350.0 False True 1481590.1052712298 1667617.6858768477 1782486.4185065334 1726243.9588938449 1581821.5619376432 1683752.6047336664 1631410.8247852258 1716058.0406431153 1534217.4028322888 1658300.9264709684 0.8934386284304882 1.0056182561663922 1.0748871872729664 1.040971473475243 0.9538808889794924 1.0153480456148944 0.9837845464254986 1.0348290911801272 0.9251743024091882 1.0 20.661274401087574 4.737684388316653 7.937136193018637 1.0074504061431535 0.8924983998050986 0.3933415336765179 0.04091300031406063 0.08924892061386774 68.50907979171934 0.009593338571382021 0.05602915624176562 54661.857835684044 -4.737684388316653 -0.11495200633805491 QLEEAEEEAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLEEAEEEAQR 11 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 326.07 7.3842e-47 2267890000.0 563380.0 624660.0 625660.0 664880.0 583380.0 642050.0 651490.0 596880.0 698010.0 695280.0 False True 560346.8246774027 645451.4304850567 713747.4896657919 749053.7398283175 657669.9850358355 597666.594723131 619974.939766514 641422.2164952272 525994.7883548047 650906.6351408446 0.860871274658544 0.9916190673726847 1.0965435765013358 1.1507852269261867 1.0103906605492314 0.9182063332229001 0.9524790596617017 0.9854289107936883 0.8080956007476999 1.0 19.312091095125446 2.846468425129357 5.262168293261799 0.9383516914272874 1.0333694377966214 0.21048159386788623 0.08545382242285611 0.3749392243294535 15.239721250667774 0.02748510212790126 0.029241726413302607 702.2122883594776 -2.846468425129357 0.09501774636933402 QLEEEDGSRDSPLFDFIESCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLEEEDGSRDSPLFDFIESCLR 22 1 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 75.773 0.010601 12819000.0 4851.3 6990.6 5607.5 8608.1 8496.0 5818.5 7774.1 6339.7 8393.9 6034.0 False True 4825.1811398301 7223.277895093062 6396.987258736255 9697.884577391624 9577.915240262704 5416.280790275734 7398.037083054022 6812.8006063443045 6325.335817497456 5648.904954032699 0.8541799125838451 1.2787040946646542 1.1324296143749963 1.716772481800813 1.695534854666854 0.958819600320785 1.3096409203650408 1.206039163657854 1.1197454850044628 1.0 12.463755511393225 1.2031550510126807 1.0048615083567076 1.0029973493713715 1.3040141771262876 0.10655358317097785 0.25924546011159105 1.135426383194598 2.4361868666782276 0.25033485338127776 0.08561001383521162 15.964490067772712 -1.2031550510126807 0.3010168277549161 QLEEPGAGTPS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLEEPGAGTPSPVR 14 0 Q96P11-2;Q63ZY6;Q96P11-5;Q96P11;Q96P11-4;Q63ZY6-5;Q63ZY6-4 Q96P11-2 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 1 QLEEPGAGTPS(1)PVR;QLEEPGAGTPS(1)PVR 252.1 3.5639999999999995e-24 923320000.0 964950.0 1093870.0 920230.0 1043430.0 1018200.0 1063390.0 1063260.0 920780.0 1110130.0 1090930.0 True False 959754.8164160241 1130278.8016916204 1049790.385217451 1175528.1310147115 1147861.734655778 989880.3522508045 1011826.0517523604 989493.2792261014 836553.3364798793 1021305.9134078373 0.9397329476078007 1.106699556766658 1.0278902446717149 1.151004919860176 1.1239156844061111 0.9692300213437778 0.9907179019224074 0.9688510232202756 0.8191016281189583 1.0 19.961983633044515 2.275925985819514 1.5720630544947471 0.9308411095474111 1.0711594201685337 0.39482280564724104 0.07286692271199981 0.39024119330887114 1.9221377701668148 0.038964751127742954 0.024487785731230484 188.7669617571707 -2.275925985819514 0.14031831062112265 QLEEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLEEQLR 7 0 H7BYY1;P09493-2;F5H7S3;B7Z596;H0YL42;P09493-3;P09493-4;P09493-10;P09493-8;H0YKX5 H7BYY1;P09493-3 TPM1 Tropomyosin alpha-1 chain 0 ; 93.429 0.034761 423500000.0 543420.0 617560.0 617480.0 653440.0 560140.0 656700.0 697880.0 573860.0 774630.0 742470.0 False True 540494.2870996376 638115.1112770967 704415.8167676263 736165.437001288 631470.5087901078 611303.8747055212 664120.8782395057 616684.347202035 583732.8160102038 695084.928939452 0.7775945997337533 0.9180390549550845 1.0134240974587252 1.059101422504608 0.9084796439963013 0.879466449716062 0.9554528527223418 0.8872071908435143 0.8398007088153281 1.0 19.406829738710393 3.0507399903082186 24.999998052063393 0.9062449921621606 0.9502200459662253 0.027024839835509296 0.07961837312186819 335.2652273089485 165185.31974462877 0.023802369507667547 0.02844926709006014 1123.9318807301397 -3.0507399903082186 0.043975053804064745 QLENLEQQKYDDEDISEDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLENLEQQKYDDEDISEDIK 20 1 G3V126;Q9UI12-2;Q9UI12 G3V126 ATP6V1H V-type proton ATPase subunit H 0 176.84 6.1719e-17 138140000.0 191890.0 139000.0 145260.0 120890.0 118740.0 192910.0 180200.0 185290.0 257480.0 177680.0 False True 190856.88556098324 143626.53097272554 165711.34537744595 136194.66160486912 133860.8351728807 179574.58576129455 171483.03756915062 199117.28068355567 194027.50405523577 166340.31028049893 1.1473880578865225 0.863449940249172 0.9962188064817701 0.8187712369611712 0.8047408048425049 1.0795614451991746 1.0309169033049146 1.1970476690093044 1.166449092995246 1.0 17.343778302680867 2.578510459658969 6.007132163700101 1.1133155225751061 0.9208098892980638 0.381781704416169 0.10667769691380956 0.22653270267820003 11.218681182039807 0.03491699354143726 0.032737486070577713 378.8876588654752 -2.578510459658969 -0.1925056332770423 QLENSLNEFGEKWELNSGDGAFYGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLENSLNEFGEKWELNSGDGAFYGPK 26 1 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 332.64 4.612199999999998e-95 298290000.0 419890.0 349930.0 316570.0 237480.0 344330.0 362590.0 308470.0 411640.0 428200.0 396750.0 False True 417629.35889416485 361577.20851284766 361140.3043242325 267544.9436506271 388178.38449619355 337525.0067450508 293548.1276301659 442358.66706556606 322675.84758603416 371429.0753252353 1.1243852100928693 0.9734757791813659 0.9722995002693485 0.7203123326205847 1.0450942327449513 0.9087199391956673 0.790320809896548 1.190964026384371 0.8687414880041061 1.0 18.50272722774379 -1.6319451664701436 7.752397782533028 1.0000558493015248 0.9601592505552371 0.008471758557220488 0.13607149854398606 0.0001282481809102408 6.08879359233869e-06 0.12864125934464765 0.030278619034180845 0.02333752700655469 1.6319451664701436 -0.039896598746287704 QLESTQTESNKK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLESTQTESNKK 12 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ; 88.28200000000002 0.016152 160107000.0 206660.0 203964.0 192041.0 184010.0 179908.0 248561.0 229259.0 236610.0 273707.0 261344.0 False True 205547.36552208435 210752.8184411582 219078.70354970454 207305.64713302988 202818.2174017401 231378.5631196573 218168.86631557115 254267.0396812353 206255.57733589594 244664.80217214453 0.8401182503458858 0.8613941056093304 0.8954238681032763 0.8473047422128623 0.8289636089912049 0.9456961568050188 0.8917051589712074 1.0392465014331513 0.8430128710985403 1.0 17.90044704261282 2.724850857649045 22.708609254030684 0.9497031423386768 0.8568742507087191 0.41377511183154947 0.05288503498088321 221.06560523810114 366167.63920126506 0.01655442745447907 0.01570870619389027 530.70216293641 -2.724850857649045 -0.09282889162995767 QLFHPEQLITGK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLFHPEQLITGK 12 0 P68363;P68363-2;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;F8VX09;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;; 170.66 4.0552e-05 42802950000.0 9043770.0 8746210.0 8223980.0 7838240.0 8003420.0 9514310.0 8630380.0 8679870.0 11557300.0 9739480.0 False True 8995079.347177295 9037322.31265441 9381844.899884408 8830560.380327156 9022608.097013103 8856608.143976681 8212895.548146755 9327605.974886792 8709158.274885723 9117898.048011651 0.9865299326459195 0.9911629045496059 1.0289482126782845 0.9684864136260928 0.9895491317739259 0.971343186482333 0.9007443935982317 1.0229995911087064 0.9551717105221349 1.0 23.120269847089002 3.696665229612829 24.67752554978345 0.9728611932566134 1.001108640741771 0.15316217856308045 0.03185993386049217 787.1323656740799 463642.11723467015 0.008366277383801616 0.012961098104900313 4973.535585039575 -3.696665229612829 0.02824744748515773 QLFHPEQLITGKEDAANNYAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLFHPEQLITGKEDAANNYAR 21 1 P68363;P68363-2;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;F8VX09;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 112.54 0.00013353 592370000.0 199620.0 329920.0 318710.0 359140.0 358570.0 323060.0 382950.0 245520.0 574340.0 417720.0 False True 198545.26809986678 340901.1877591481 363581.5977230191 404607.0871765463 404231.764089101 300727.62260144023 364425.2454889361 263841.9491252983 432801.60276170616 391060.7519719155 0.5077095236448723 0.8717345988830665 0.9297317511145433 1.0346399763625567 1.0336802198910808 0.7690048696654616 0.9318890828377165 0.6746827642377327 1.1067375096562704 1.0 18.577033224578724 4.73836478390104 3.8418348969555653 0.9117690927190608 0.4678197431304083 0.508176051719796 0.12373405754203019 0.22118586293120676 6.461731798599235 0.03079704294163759 0.2771656963559447 54747.56197654509 -4.73836478390104 -0.4439493495886525 QLGEAHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLGEAHGR 8 0 Q15075 Q15075 EEA1 Early endosome antigen 1 0 59.931 0.095502 24966000.0 34449.0 35351.0 34432.0 39425.0 36724.0 112550.0 37897.0 56222.0 44889.0 38712.0 False True 34263.53041164373 36527.63666486922 39279.726311690865 44416.200957663656 41400.583719798466 104769.68341420194 36063.777329401215 60417.571129531265 33826.707431783005 36241.36701698935 0.9454259933291578 1.0078989748854028 1.0838367739626704 1.2255663793488274 1.1423571219151463 2.890886631431084 0.9950998071484201 1.6670886366181636 0.9333728337544664 1.0 15.145349754123322 2.967614911616974 24.99995420497008 1.5576478428257539 1.0779895014606482 0.1281600966200902 0.533943118874667 1186.7063075381604 916088.6691101698 0.15770102100576214 0.16739645891631919 928.1430385120774 -2.967614911616974 -0.47965834136510566 QLHDDYFYHDEL ddPTM_BT-474_Trastuzumab_2h_R1 3 QLHDDYFYHDEL 12 0 Q14257;Q14257-2;A8MXP8 Q14257 RCN2 Reticulocalbin-2 0 ;; 207.95 7.2527e-08 2268480000.0 1404990.0 1782080.0 1751750.0 1772330.0 1640720.0 1687980.0 1749070.0 940560.0 1862380.0 1447250.0 False True 1397425.6899490638 1841395.4555098899 1998381.173516045 1996706.7962789119 1849655.9666906572 1571293.9156775177 1664460.8020037413 1010749.3632669058 1403421.4036134477 1354885.2659469377 1.0313978054609623 1.359078515200272 1.4749449445960017 1.4737091371964999 1.3651753496617451 1.159724705234971 1.2284883774571416 0.7460036570406474 1.0358230611007404 1.0 20.36973925613749 2.0911609769986783 1.9609213042139872 0.9095480391493234 1.3442924935199907 0.5496149146343985 0.15087957852275918 0.22844263552186975 1.6874579685055395 0.08343329846901246 0.04687217943097462 123.3561984577901 -2.0911609769986783 0.43474445437066733 QLHLEGASLELS(ph)DDDTESK ddPTM_BT-474_Trastuzumab_2h_R1 6 QLHLEGASLELSDDDTESK 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK 350.26 6.309099999999996e-91 8118430000.0 4020430.0 3380430.0 3070680.0 2736790.0 2577360.0 3967720.0 3822140.0 3738100.0 5309090.0 3977600.0 True False 3998784.451591764 3492945.569036915 3503005.053170972 3083267.333390599 2905571.5187904285 3693440.8554082336 3637248.4862072873 4017056.0036871806 4000735.9076612233 3723746.1626053164 1.073860643818433 0.9380192463476291 0.9407206883081679 0.8280014798950187 0.7802818430452702 0.9918616076730967 0.9767713284899336 1.078767410095604 1.0743847010404466 1.0 21.828323301073734 2.169727563684942 2.18161110367906 1.0542383081115128 0.9117562113285244 0.34204886447463223 0.07820009171586621 0.34397541336387366 3.265688974547121 0.040319845355280326 0.025391187317516356 147.81808229073323 -2.169727563684942 -0.1424820967829884 QLHQSCQTDDGEDDLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLHQSCQTDDGEDDLKK 17 1 P61201;P61201-2;B4DIH5;H0YKU5;H0YM03 P61201 COPS2 COP9 signalosome complex subunit 2 0 138.66 1.89e-06 142400000.0 74605.0 98450.0 85601.0 99911.0 91201.0 131880.0 129390.0 122960.0 129720.0 129450.0 False True 74203.33496939468 101726.84873571823 97652.87674276975 112559.72235589442 102814.90675932186 122763.44601212743 123130.91138219979 132135.89957822874 97752.2441589451 121188.3901722791 0.6122973897409532 0.8394108428299549 0.8057939923448796 0.928799550814081 0.8483890792935045 1.0129967551975008 1.016028938144646 1.0903346384120365 0.8066139340573992 1.0 16.886891969921358 5.570271420099142 0.4677480798684227 1.0026719351673083 2.6836325510302557e-12 0.6288751274211253 0.08169558559837771 6.139626327726703 0.5765993386208423 0.04998470126031787 4.000791388333627 371767.49925263313 -5.570271420099142 -1.0026719351646247 QLICDPSYIPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLICDPSYIPDR 12 0 P31150 P31150 GDI1 Rab GDP dissociation inhibitor alpha 0 ; 145.91 0.00069233 104200000.0 191097.0 192428.0 181992.0 196223.0 191019.0 219570.0 189919.0 170520.0 231490.0 203625.0 False True 190068.15498487282 198832.84965481784 207614.89169717842 221064.81168080246 215344.13739168347 204391.64271218423 180731.89240896504 183245.06828301525 174442.39130707868 190629.47816786674 0.9970554229682168 1.0430330689974783 1.0891017154983473 1.1596570153024006 1.129647625652383 1.072193265577733 0.9480794583606531 0.9612630220896433 0.915086129299825 1.0 17.540411703434128 2.2682711123530086 5.528855784173695 0.9531778295732634 1.0869961251834193 0.6434773477763633 0.04578095610298449 0.11693700259136126 9.640153242113092 0.01788005002387561 0.014412897226141913 185.4689068934639 -2.2682711123530086 0.1338182956101559 QLIVGVNK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLIVGVNK 8 0 A0A2U3TZH3;Q05639;A0A2R8Y488;P68104;Q5VTE0;A0A087WV01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ; 111.01 0.007715 1173850000.0 1489390.0 1649920.0 1386310.0 1332130.0 1381960.0 1562900.0 1440220.0 1373190.0 2000570.0 1721710.0 False True 1481371.289726785 1704836.5898022961 1581490.3979774686 1500777.5214136348 1557944.4144813376 1454860.4016708685 1370551.0564253174 1475664.4107175325 1507556.329764577 1611828.9937699093 0.9190623170650402 1.0577031412090754 0.9811775343974415 0.9311021995599322 0.9665692951939393 0.9026146119062503 0.850307980389243 0.9155216939398135 0.9353078618089326 1.0 20.62026725926516 3.396197720617396 1.4478571795796398 0.9128986391205939 0.9922791835615974 0.19394966169416106 0.049243653460821483 0.49378386801394347 2.1235396554596617 0.015973075995921283 0.027407584411715438 2489.990674706558 -3.396197720617396 0.07938054444100351 QLIYNYPEQLFGAAGVMAIEHADFAGVER ddPTM_BT-474_Trastuzumab_2h_R1 1 QLIYNYPEQLFGAAGVMAIEHADFAGVER 29 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 169.65 2.9712e-12 133480000.0 116950.0 120370.0 105580.0 101040.0 100610.0 107900.0 76985.0 92757.0 123960.0 102270.0 False True 116320.35419436646 124376.44268479844 120444.74628218869 113831.65364013528 113422.08713780972 100441.12696927928 73260.9414387406 99678.99835050217 93411.7189788995 95743.0410422478 1.2149222849840196 1.299065094766687 1.2580000067998776 1.1889287451179418 1.184650977273229 1.0490697378722114 0.7651829380102236 1.0411095915213051 0.975650219191183 1.0 16.546880009994986 2.709135293272656 2.6381162980616883 0.9490177034106501 1.2400336683262358 0.7640731046591788 0.07468844780418753 0.13250740234448788 1.831445837558626 0.025934118169777098 0.025373118096818272 511.8412616832965 -2.709135293272656 0.2910159649155858 QLKDSEER ddPTM_BT-474_Trastuzumab_2h_R1 3 QLKDSEER 8 1 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2 A0A2R8Y430 GSS Glutathione synthetase 0 ;; 98.033 0.007122399999999998 522027000.0 876710.0 964360.0 893990.0 912890.0 824300.0 920600.0 992730.0 927130.0 1316990.0 1056240.0 False True 871989.890771639 996458.1396320695 1019856.0212996216 1028461.7803992793 929269.7189911198 856961.0888592994 944707.8573031239 996317.1484707475 992435.4612618651 988829.8589074407 0.8818401698904013 1.0077144522446535 1.0313766439319114 1.0400796164626622 0.9397670495284912 0.866641597783219 0.9553795820313646 1.0075718684016879 1.0036463324018232 1.0 19.915362782249588 1.7135936708433221 6.9940973603741545 1.0038836187188938 0.9636396808003725 0.11683766252112893 0.0539949450663248 0.3378892638374702 40.43766033650188 0.02936538195110485 0.015275346766781423 51.71227816136202 -1.7135936708433221 -0.04024393791852121 QLKEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLKEELR 7 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 0 75.38 0.039789 171100000.0 519250.0 544160.0 552220.0 525170.0 492920.0 616900.0 559030.0 598450.0 773030.0 622670.0 False True 516454.4156940988 562272.0366483339 629967.7760177142 591656.4681531069 555690.4402342628 574255.1550263988 531987.583198015 643109.3778675257 582527.1145713024 582930.6675053932 0.8859619925371668 0.9645607410818403 1.0806907427149317 1.0149688481566 0.9532702106964062 0.9851174196819658 0.9126086734716066 1.1032347648128769 0.9993077170981282 1.0 19.1529647770833 1.7372214707602427 24.99999999751836 1.041881320465383 0.9765433313169777 0.19623857493200836 0.057188604870914594 0.29446621305580634 5271.184553863814 0.02699351221786394 0.014969199162495223 54.60362441646866 -1.7372214707602427 -0.06533798914840527 QLLCGAAIGTHEDDKYR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLLCGAAIGTHEDDKYR 17 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 ;; 137.14 4.7937e-06 1495680000.0 1299770.0 1062990.0 986770.0 951840.0 928550.0 1238890.0 1116410.0 1132070.0 1603120.0 1197020.0 False True 1292772.1827380215 1098370.9795589757 1125698.6388414036 1072342.846405646 1046795.3385529579 1153248.4503333678 1062404.983199641 1216550.8119349803 1208052.5567074332 1120625.1587796195 1.1536169544380683 0.9801412818137342 1.0045273658386442 0.9569148416884075 0.9341172918988687 1.029111689397796 0.9480466995374428 1.0856001245410425 1.0780166295954159 1.0 20.095872356831034 1.7019736350187082 10.459599647526396 1.0606761778059686 0.9971274290762984 0.13107128614699082 0.06202730069960236 0.1941068061856162 40.23296464609827 0.028682849706716685 0.015544877534416544 50.347004339563725 -1.7019736350187082 -0.0635487487296702 QLLDS(ph)DEEQEEDEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLLDSDEEQEEDEGR 15 0 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR 287.09 2.4709e-34 2818700000.0 1044570.0 1132290.0 994410.0 1090760.0 968870.0 1280100.0 1349360.0 1007300.0 1279660.0 1295220.0 True False 1038946.151182637 1169977.5881662404 1134414.284433333 1228850.1041618572 1092249.8515575964 1191609.7000312721 1284086.3017442252 1082469.8409657576 964304.9395654933 1212557.9507063676 0.8568218538152389 0.9648838535796807 0.9355546955693849 1.0134361854177762 0.900781567529464 0.9827239179266507 1.0589896350901737 0.8927159649030976 0.7952650337278674 1.0 20.209622267715755 -1.1665024692824018 4.000133042127596 1.0000263336990136 0.9394770197140335 0.06390449854413793 0.07321018858313161 10369729.71176339 3023978.5794268413 2515.5513103033745 0.016938748870254157 0.06815496996061729 1.1665024692824018 -0.06054931398498009 QLLEEELAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLLEEELAR 9 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 127.68 0.0010205 308360000.0 320450.0 375750.0 350160.0 373420.0 356510.0 374140.0 367400.0 307300.0 358430.0 358870.0 False True 318724.7328053423 388256.61160432827 399459.4843547193 420694.93371238513 401909.4352996771 348276.58243082627 349627.45839570434 330232.2864377818 270099.729215932 335966.60935593565 0.9486797911743465 1.1556404737620656 1.188985670690616 1.252192694145641 1.1962779160409929 1.0366404658441786 1.0406613296064071 0.9829318665651124 0.8039481356011133 1.0 18.35795832973138 2.0440027809665833 1.3572245161640832 0.9151406626728446 1.1516644354616679 0.5063639809190931 0.09152717051340434 0.35262318353691385 1.214113542341059 0.06433081675300022 0.03135801237755097 110.6630870168592 -2.0440027809665833 0.2365237727888233 QLLEELER ddPTM_BT-474_Trastuzumab_2h_R1 3 QLLEELER 8 0 Q9NWB6;Q9NWB6-2;Q9NWB6-3 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 0 ;; 128.38 0.0026425 164818000.0 236558.0 284590.0 246537.0 262661.0 269431.0 264544.0 266314.0 234266.0 282617.0 259310.0 False True 235284.39801206466 294062.4061117123 281247.26666198124 295913.85566876124 303741.4408073472 246256.6959495926 253431.3744017244 251748.118498644 212969.8272237791 242760.61379353955 0.9692033412477974 1.2113266708157333 1.1585374672893742 1.2189533180222838 1.251197367072362 1.0144013565521233 1.0439558972991394 1.0370220875810936 0.8772832787649129 1.0 17.889174847867313 2.6593121650024534 7.726161875114915 1.0035001963590298 1.1674063644271795 0.4989167952449536 0.08352233018025919 0.2617849177882016 22.92118715000663 0.026936716493950512 0.02538369905067311 456.3648269562924 -2.6593121650024534 0.16390616806814973 QLLGHMEDLEGDAQSVLDAR ddPTM_BT-474_Trastuzumab_2h_R1 4 QLLGHMEDLEGDAQSVLDAR 20 0 Q9NX46 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 0 ;;; 275.23 1.6613e-44 561560000.0 337950.0 389196.0 368938.0 391304.0 375055.0 394656.0 369290.0 321602.0 386253.0 365292.0 False True 336130.51474977453 402150.15358604956 420881.2635334169 440843.04627869686 422816.0311248503 367374.3596402957 351426.03187520336 345601.57430186594 291066.12367503135 341978.7518177844 0.9828988291321504 1.1759507029264968 1.2307234332432266 1.289094845616578 1.236380999922879 1.0742607769854742 1.027625342238961 1.0105937063774415 0.8511234166680605 1.0 18.38354716329236 2.242525301636194 1.6076392049860249 0.9552678961751482 1.1891687862752065 0.5672382375350953 0.08709635477325783 0.291916439578867 1.495575334564006 0.04982341804301014 0.030484098005204522 174.79350927002045 -2.242525301636194 0.23390089010005832 QLLHSCTVIATNILLVDEIMR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLLHSCTVIATNILLVDEIMR 21 0 P40227;P40227-2;Q92526-3;Q92526;Q92526-2 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 ;; 250.67 4.8546999999999985e-31 526199000.0 379829.0 388155.0 334300.0 381272.0 319334.0 414961.0 299513.0 301919.0 441210.0 362500.0 False True 377784.0428669694 401074.5045303473 381366.5342123102 429540.996107301 359999.2920590931 386275.72278312413 285024.41193922877 324449.7288936177 332479.7074111022 339364.93964813626 1.1132088166169058 1.1818383624018243 1.123765273477344 1.2657200138372042 1.060802840836626 1.1382310829858453 0.8398758346538409 0.9560496415157584 0.979711421444499 1.0 18.372477999810908 2.2857688535076175 10.819251548135727 0.9384276065795095 1.1494003465955962 0.7122357395000145 0.06327663438071658 0.2694543791732712 60.58158982592028 0.02128908732438595 0.01778017350477063 193.09403304773858 -2.2857688535076175 0.21097274001608668 QLLLQQQQQQQVSGLKS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLLLQQQQQQQVSGLKSPK 19 1 A0A3B3IUB6;Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IST0;A0A3B3IST6;A0A3B3IRY1;A0A087WVT2;A0A3B3IU15;A0A3B3IU08;G5E965 A0A3B3IUB6 FOXP1 Forkhead box protein P1 1 QLLLQQQQQQQVS(0.038)GLKS(0.962)PK;QLLLQQQQQQQVSGLKS(1)PK 208.63 1.5829e-16 1258260000.0 703720.0 344100.0 355970.0 340860.0 326200.0 580580.0 522870.0 519030.0 834540.0 558610.0 True False 699931.2497106418 355553.16048715776 406087.4818532938 384012.8410508365 367739.6364611223 540445.8711383145 497576.78054262954 557762.6541809364 628878.7992630755 522959.03154991823 1.338405510726572 0.6798872168502151 0.7765187277667874 0.7343076950267396 0.7031901435399922 1.033438259086127 0.9514641693211376 1.0665513367803765 1.2025393220559513 1.0 18.996338405048917 2.644992995712958 7.438876814770539 1.0489349510553645 0.8273890713633608 0.22904595100516478 0.1858790812139118 0.3945166580241176 27.61656121130878 0.05924350618144777 0.05579753688429618 441.56332577716887 -2.644992995712958 -0.22154587969200368 QLLLTADDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QLLLTADDR 9 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;; 203.19 4.3329e-05 871470000.0 1520220.0 1434210.0 1370730.0 1238080.0 896660.0 1362150.0 1291700.0 1030980.0 1655380.0 1323670.0 False True 1512035.304432321 1481946.8128517484 1563716.8694012582 1394820.8010567972 1010844.3360797983 1267987.7766561974 1229215.5362268137 1107916.9628103608 1247433.779955557 1239192.247349098 1.220178150458005 1.1958974210998778 1.261883999634753 1.125588708322395 0.8157284216732427 1.0232373381682296 0.9919490207079437 0.8940638268036588 1.0066507296378664 1.0 20.24096859278476 3.4359555353787896 6.342645649894885 0.9522363685906948 1.2188102142507653 0.8068239487634354 0.060327100259817086 0.07138869087206705 7.465267111574012 0.01610907333655581 0.022110034397585143 2728.6983946119917 -3.4359555353787896 0.2665738456600705 QLLLTADDRVNPCIGGVILFHETLYQK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLLLTADDRVNPCIGGVILFHETLYQK 27 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ; 232.32 7.667e-36 669552000.0 376436.0 505591.0 405116.0 432628.0 368479.0 544732.0 435668.0 376010.0 679612.0 515537.0 False True 374409.3104019712 522419.2907987867 462152.81146860425 487398.6604416514 415402.6165038567 507075.9590012003 414593.0744266193 404069.77554009174 512130.7289342364 482634.98728656844 0.7757608135849103 1.0824314535004815 0.957561767469206 1.0098701363982436 0.8606972711184904 1.050640696092179 0.8590199329673779 0.8372160870719719 1.0611139731362962 1.0 18.880572977962345 2.2028541521350484 24.99925918629077 0.9139000988248199 0.9600660985812672 0.0 0.10367438729656342 651.3455252425593 456024.5912351616 0.0370985278656455 0.02740009728022461 159.53432977207908 -2.2028541521350484 0.04616599975644731 QLLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 QLLSPK 6 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 QLLS(1)PK;QLLS(1)PK;QLLS(1)PK 113.74 0.027149 3083140000.0 6076100.0 5103700.0 5038000.0 4821000.0 4173800.0 5250500.0 5332300.0 4725000.0 7011500.0 4532000.0 True False 6043386.952718166 5273573.5692481985 5747306.608918986 5431338.105691735 4705308.689949213 4887545.293347549 5074356.277635857 5077603.493063842 5283609.774286489 4242763.879959591 1.4243986051789723 1.242957119098135 1.3546138252156812 1.2801414972316263 1.109019691662414 1.1519720238105966 1.1960025165680883 1.196767870361007 1.2453226066251917 1.0 22.016572960729125 7.999999999999999 0.10805288601448719 0.9642908261483168 2.165015333590271 0.6255482483602722 0.07007668235505667 80.82218245295634 0.6107588251538911 0.6948552228779524 14.458529746654822 99999999.99999979 -7.999999999999999 1.200724507441954 QLLTLS(ph)SELSQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLLTLSSELSQAR 13 0 P15311;E7EQR4 P15311 EZR Ezrin 1 QLLT(0.007)LS(0.392)S(0.392)ELS(0.21)QAR 87.99 0.0085115 34759000.0 40212.0 45322.0 35636.0 41799.0 39537.0 42696.0 38843.0 38408.0 48032.0 41760.0 True False 39995.50305997319 46830.51537227243 40653.23904633531 47090.74911425196 44571.80259584118 39744.526015573196 36964.01569533027 41274.199991872185 36195.1571958253 39094.84104746526 1.0230378737546069 1.1978694405078982 1.039861985804674 1.2045259132037094 1.140094227310614 1.0166181764831617 0.9454959965293644 1.0557454356128715 0.9258295014393474 1.0 15.25469062170377 2.6624736235981383 4.718298395704564 0.9916483280771117 1.1254209214386381 0.521878926230555 0.06353796979841991 0.17435580412482318 7.209166448901258 0.0196472743803759 0.01858890787479434 459.6990683613078 -2.6624736235981383 0.13377259336152647 QLNENKQER ddPTM_BT-474_Trastuzumab_2h_R1 6 QLNENKQER 9 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ;;;;; 160.36 5.9605e-05 2921110000.0 3017080.0 3256860.0 3152400.0 3395040.0 3258220.0 3471550.0 3772600.0 3410350.0 4835220.0 3819550.0 False True 3000836.3765091016 3365262.6162865562 3596230.5188479987 3824851.715898702 3673135.0040170373 3231569.9196496927 3590104.925268469 3664847.634406407 3643644.8196285414 3575783.048918726 0.8392109743393181 0.9411260611306302 1.0057183194980064 1.0696543004909906 1.0272253528154482 0.9037376919796297 1.0040052419718455 1.0249077151128094 1.0189781566111333 1.0 21.76982777683424 4.601137051248716 2.305499737490174 1.0076828567579112 0.8227754309474771 0.6318443005815522 0.03954231541541435 0.2924814294357654 2.2694728556890316 0.010681824159582905 0.09631144987918176 39915.084338407505 -4.601137051248716 -0.18490742581043418 QLNVNAKPFVPNVHAAEFVPSFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLNVNAKPFVPNVHAAEFVPSFLR 24 1 P15170-2;P15170-3 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 ; 105.16 0.0017549 901160000.0 1349840.0 1517440.0 1358850.0 1349570.0 1361070.0 1495360.0 1411080.0 1273600.0 1949860.0 1674290.0 False True 1342572.6114213238 1567947.0730881495 1550164.2686640674 1520425.4236254697 1534394.1968060688 1391989.282898808 1342820.6695509267 1368642.4992097584 1469343.1297853892 1567435.378768216 0.8565409646912509 1.0003264532157847 0.9889812936864286 0.9700083615697832 0.9789202270092227 0.8880680516428793 0.8566992220158991 0.873173157725532 0.9374186328115718 1.0 20.579974535061286 2.734834534734145 24.771372027024164 0.8963366045202767 0.9635360011863556 0.1381300326384074 0.0532328600706075 374.89882478928064 2492359.7529600887 0.016377888959007863 0.01599602968636273 543.0433937055722 -2.734834534734145 0.06719939666607888 QLPAHDQDPSK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLPAHDQDPSK 11 0 Q9UGI8-2;Q9UGI8;F8W7T0 Q9UGI8-2 TES Testin 0 ;;; 130.44 0.00022421 2347790000.0 1679430.0 1570380.0 1364170.0 1440310.0 1433360.0 1856530.0 1768130.0 1644690.0 2235740.0 1795120.0 False True 1670388.1354822132 1622649.1489852434 1556233.2784217992 1622653.0983216893 1615889.8998096704 1728192.4509015407 1682598.796987473 1767425.1193665972 1684771.8343811298 1680553.9047204452 0.9939509412880613 0.9655442437326436 0.9260240174686177 0.9655465937533331 0.9615222072144533 1.0283469313583369 1.0012167965938397 1.0516920132119194 1.00250984490818 1.0 20.680505387974627 2.743179880415722 24.41525640664845 1.021241778216602 0.9608265997097576 0.6148578534837501 0.021293798890796495 171.49341260063122 906433.4240548627 0.006650270192708855 0.006830079395849541 553.5793487485008 -2.743179880415722 -0.0604151785068443 QLPALDGSLMGPES(ph)PPAQEEEAPVS(ph)PHK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLPALDGSLMGPESPPAQEEEAPVSPHK 28 0 A0A494C108;Q8N9T8 A0A494C108 KRI1 Protein KRI1 homolog 2 QLPALDGSLMGPES(1)PPAQEEEAPVS(1)PHK 147.16 4.3424e-08 67020000.0 112110.0 85964.0 83757.0 70350.0 73579.0 97537.0 90058.0 85035.0 104750.0 100370.0 True False 111506.41221659206 88825.25977366458 95549.25757110512 79256.30278685197 82948.849513099 90794.49676740114 85701.55048503091 91380.74349898075 78935.7660780875 93964.3006689198 1.1866891087656932 0.945308581464758 1.0168676496382372 0.8434724913891396 0.8827698277175139 0.9662658703470017 0.9120650063367957 0.9725049071663703 0.8400612308733627 1.0 16.519825125378617 5.989410878419278 1.2038732188842949 0.9235317572939875 5.284785362121692 0.6376792701437288 0.057968163476270665 16.084477069989653 1.6933986633293807 0.015386807804797117 167.7652421105089 975912.4948546628 -5.989410878419278 4.361253604827705 QLPALDGSLMGPES(ph)PPAQEEEAPVSPHK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLPALDGSLMGPESPPAQEEEAPVSPHK 28 0 A0A494C108;Q8N9T8 A0A494C108 KRI1 Protein KRI1 homolog 1 QLPALDGSLMGPES(1)PPAQEEEAPVSPHK;QLPALDGSLMGPES(1)PPAQEEEAPVSPHK;QLPALDGSLMGPES(1)PPAQEEEAPVSPHK;QLPALDGSLMGPES(1)PPAQEEEAPVSPHK 253.21 6.1213e-53 1592970000.0 1094950.0 1094230.0 1116180.0 1096990.0 1100940.0 1255170.0 1093690.0 1305560.0 1309180.0 1131290.0 True False 1089054.910860382 1130650.7840739964 1273328.4419895187 1235868.82152308 1241138.183217377 1168403.0522523674 1040784.0363984692 1402987.516699352 986550.1311132276 1059090.1036539034 1.028292972527171 1.0675680758164068 1.2022852801631179 1.166915654540896 1.1718910212978106 1.1032140213767743 0.9827152881588852 1.3247102506755457 0.9315072699759822 1.0 20.01439390328602 1.1834034715727064 24.999999738619376 0.9657523456818464 1.134869757323949 0.33775774990188245 0.092395295184948 113.77508367139525 51565.57463108733 0.08804873513622156 0.022012225648885764 15.254692988161036 -1.1834034715727064 0.1691174116421026 QLPDKWQHDLFDSGFGGGAGVETGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLPDKWQHDLFDSGFGGGAGVETGGK 26 1 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 ; 286.03 1.712899999999999e-61 2912100000.0 2047730.0 1600660.0 1649620.0 1496240.0 1523490.0 2165420.0 1791330.0 1689380.0 2478530.0 1921340.0 False True 2036705.2492041902 1653937.000480595 1881872.1572459207 1685663.8305870576 1717497.4210673051 2015729.612250389 1704676.5243548667 1815450.1140978173 1867729.4921004488 1798718.4362580674 1.1323090974934436 0.9195085607291235 1.046229426080071 0.9371471357650611 0.9548450643783198 1.1206476631460882 0.9477172691358859 1.009301999413848 1.0383667918509512 1.0 20.77853794023499 QLPTAAPDKTEVTGDHIPTPQDLPQR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLPTAAPDKTEVTGDHIPTPQDLPQR 26 1 P56211;H3BMD8;P56211-2;H3BQ52 P56211 ARPP19 cAMP-regulated phosphoprotein 19 0 ; 131.56 3.7552e-05 1026040000.0 1010510.0 938370.0 870170.0 904910.0 925090.0 1137650.0 1055170.0 1007960.0 1302140.0 1210000.0 False True 1005069.5264382144 969603.0781933572 992682.3723467722 1019471.5132174876 1042894.7280619863 1059006.9332400428 1004127.3959591605 1083179.0935171717 981245.0447820604 1132776.764066881 0.8872617785960106 0.8559524779730653 0.8763265665715603 0.8999756576550826 0.9206533547861616 0.9348769915071432 0.8864300785568331 0.9562158475323554 0.866229848553043 1.0 20.111432147070566 -4.999999998842439 0.07470546392192852 1.317387981327925 0.7943715695815344 0.5377073156518355 0.028915702583816268 201.582846676306 1.0765948674408037 10.912607144992021 1.1893935782827116 1.000000002665383e-05 4.999999998842439 -0.5230164117463906 QLQDEMLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLQDEMLR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 75.378 0.08967 179620000.0 270270.0 307540.0 317040.0 312760.0 302970.0 335040.0 347090.0 299030.0 335480.0 353220.0 False True 268814.8963498199 317776.28298814414 361676.47623891965 352355.38393199444 341551.4336561197 311879.4733993269 330299.9306874393 321345.13704357244 252805.44920168794 330677.1971931438 0.8129223866404341 0.9609863809343213 1.093744834264062 1.0655569447269408 1.0328847484957495 0.9431538553206092 0.9988591094006275 0.9717789426401827 0.7645082616749891 1.0 18.33506403816779 1.4283898522737841 13.611114740843187 0.87747326865437 0.9916685459357584 0.17306370164288554 0.089804769732037 1.687856311439978 468.29427096808575 0.054584165062449425 0.021959131696579932 26.815744083527232 -1.4283898522737841 0.11419527728138834 QLQEERPELSESELTR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLQEERPELSESELTR 16 1 E9PKP7;P17480-2;P17480;E9PLT2 E9PKP7 UBTF Nucleolar transcription factor 1 0 ;; 177.01 2.7528000000000003e-09 1733380000.0 452529.0 594260.0 493180.0 473170.0 563270.0 614390.0 591600.0 494440.0 548750.0 626800.0 False True 450092.6341446982 614039.5848622447 562615.4572025944 533073.2734847866 634999.0957371446 571918.6654184934 562982.0478685326 531337.6235154473 413517.9153732748 586797.087369522 0.7670328361075568 1.0464257544543116 0.9587904734235674 0.9084456705032962 1.082144252937078 0.9746446901811917 0.959415204994035 0.9054878337881892 0.7047034218028956 1.0 19.162502184493828 1.529510260023121 4.644585554910437 0.8387603166371649 0.9627835227398145 0.13291112805141303 0.10355221217649223 0.2461570313126916 11.651504528604672 0.05800220796433632 0.0248742779009698 33.84622677995262 -1.529510260023121 0.12402320610264961 QLQGPEKEPPKPEQVESR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLQGPEKEPPKPEQVESR 18 2 O60664-4;O60664;O60664-2;K7ERZ3 O60664-4 PLIN3 Perilipin-3 0 ;; 167.16 1.3437999999999997e-11 2441000000.0 1510900.0 1228750.0 1228180.0 1150120.0 1089630.0 1677400.0 1511460.0 1386960.0 2090070.0 1717800.0 False True 1502765.4822767696 1269648.200954939 1401097.0684680694 1295725.074075539 1228387.9217569989 1561445.2861748761 1438344.9054620885 1490461.9980401734 1575000.2540031334 1608168.5333174276 0.9344577083452651 0.7894994676558132 0.871237708884778 0.8057147290418863 0.7638427791041315 0.9709462993619407 0.8943993590615676 0.9268070896559317 0.9793751223039586 1.0 20.616987175741755 2.7257957484230504 24.995204647619214 0.9429555796974726 0.8311505033093004 0.5709242166643509 0.05212858654604665 595.7803493346669 1166610.4623544512 0.016328619130599808 0.015485121995587272 531.8580640600733 -2.7257957484230504 -0.11180507638817216 QLRDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLRDELR 7 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 0 ; 110.81 0.0061291 158280000.0 117220.0 163935.0 167858.0 134220.0 116385.0 130545.0 166310.0 113180.0 192334.0 133759.0 False True 116588.90054436646 169391.47737419975 191490.94735210872 151212.23823811338 131205.93988205926 121520.73141987556 158264.94993410332 121626.06631639479 144935.8628435596 125222.3861031587 0.9310547752086441 1.3527252007053625 1.529206983760537 1.2075495679625856 1.0477834192839233 0.9704393535495027 1.263871060592345 0.9712805361830332 1.1574277359973069 1.0 16.93413297147588 3.393543703744878 4.895647072822239 1.0706457548711792 1.2923357307711152 0.24434458908954537 0.16165550777874632 0.2657003711939415 11.221662446386105 0.044834649021343424 0.06161412511024216 2474.820493928217 -3.393543703744878 0.221689975899936 QLS(ph)EEQPSGNGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSEEQPSGNGVK 13 0 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 QLS(1)EEQPSGNGVK;QLS(1)EEQPSGNGVK 216.71 2.8350000000000004e-11 911680000.0 997810.0 846130.0 880900.0 804190.0 825470.0 1171220.0 1047490.0 1022800.0 1310360.0 1153850.0 True False 992437.9018271128 874292.9255536138 1004923.0630799414 906000.3715445416 930588.7115559868 1090256.3181553222 996818.9068996102 1099126.5296731645 987439.335924417 1080210.305139314 0.9187450787179066 0.8093728798864374 0.9303031625404993 0.8387259103473331 0.861488459356967 1.009300052932482 0.9228007751426248 1.017511612733051 0.9141176780359151 1.0 20.042880786013576 2.7482374691660607 24.705700632375216 0.9732872530005775 0.8696837954702955 0.5511217687165848 0.045564119736202474 400.16003368480733 1021637.0913057695 0.012829717112135758 0.013441954577464943 560.0637567060606 -2.7482374691660607 -0.103603457530282 QLS(ph)ESES(ph)SLEMDDER ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSESESSLEMDDER 15 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 QLS(0.997)ES(0.003)ES(0.985)S(0.015)LEMDDER;QLS(0.998)ES(0.002)ES(0.966)S(0.034)LEMDDER 416.56 2.209999999999999e-133 822830000.0 923030.0 951380.0 844060.0 1014360.0 985630.0 1049430.0 984760.0 933910.0 871080.0 992800.0 True False 918060.5090382742 983046.1081786448 962896.3112989608 1142777.8719953273 1111144.1382132936 976885.3741925004 937123.3966514806 1003603.1064988897 656414.0058739904 929438.6540211574 0.9877580462856194 1.05767723768057 1.0359977037032524 1.2295355557369723 1.195500244589569 1.0510487916185407 1.0082681547588703 1.079794887114781 0.7062478013304663 1.0 19.826000120151605 1.2664545133789917 24.253206628654446 0.8531240917361959 1.0824562388240817 0.46373819982653186 0.09787440317204903 111.34133602889459 96809.47041034988 0.06495229211650864 0.023705080321690296 18.469473413960607 -1.2664545133789917 0.22933214708788585 QLS(ph)ESES(ph)SLEMDDERYFNEMSAQGLRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSESESSLEMDDERYFNEMSAQGLRPR 28 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 QLS(0.998)ES(0.02)ES(0.563)S(0.419)LEMDDERYFNEMSAQGLRPR 83.198 0.002241 33525000.0 15524.0 18745.0 15538.0 21621.0 21853.0 22033.0 22395.0 17455.0 26139.0 22330.0 True False 15440.420508878551 19368.915993408216 17725.61534128291 24358.21638314893 24635.850017121124 20509.910570103166 21311.66829279205 18757.580734694056 19697.393694655173 20904.880282325186 0.7386036322787858 0.9265260423320574 0.8479175724469322 1.1651928188148246 1.178473623594507 0.9811063394342439 1.0194589973715753 0.8972823800647811 0.9422390096779971 1.0 14.35155216095636 4.4914129259903355 1.5151433765507054 1.012494226828911 0.7225174405915633 0.4327641789034775 0.09569071480813239 0.7598628748495047 2.311715990907799 0.028877038833007684 0.28788997365907903 31003.657174071384 -4.4914129259903355 -0.2899767862373477 QLS(ph)ESESS(ph)LEMDDERYFNEMSAQGLRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSESESSLEMDDERYFNEMSAQGLRPR 28 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 QLS(0.998)ES(0.021)ES(0.237)S(0.743)LEMDDERYFNEMSAQGLRPR 94.352 0.0012731 65685000.0 43694.0 50786.0 47671.0 57753.0 66533.0 58628.0 59933.0 53923.0 64670.0 68774.0 True False 43458.756358859784 52476.38130921471 54382.66243624 65064.52387845152 75005.58317801307 54575.18435546716 57033.8118237065 57947.00807544582 48732.945033603035 64384.78443961631 0.6749848855923073 0.8150432088256818 0.8446508427351052 1.0105574546028449 1.1649582091613204 0.8476410200091739 0.8858274873498416 0.9000109044364635 0.756901579429959 1.0 15.974432167157822 4.456963108229032 1.7745795129744677 0.9315337228892886 0.6643984103757523 0.3713854892944637 0.1051148969377008 0.6005015463842542 2.8558487629237783 0.029466258675268853 0.22496063374549324 28639.34678512627 -4.456963108229032 -0.2671353125135363 QLS(ph)ESESSLEMDDER ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSESESSLEMDDER 15 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 QLS(0.994)ES(0.006)ESSLEMDDER;QLS(0.998)ES(0.001)ESSLEMDDER 313.45 2.3188e-36 1593400000.0 219584.0 241618.0 188777.0 222753.0 212907.0 223063.0 227897.0 193085.0 211773.0 234493.0 True False 218401.78414207598 249660.10906883454 215355.16072090124 250953.50696062006 240019.44445134312 207643.17984382165 216872.7514589163 207493.98316576343 159584.38176281456 219527.45598044238 0.9948722958896463 1.1372614325338726 0.9809941984663967 1.1431531688818797 1.0933459023582288 0.9458642834284952 0.9879071867813992 0.9451846569216791 0.726944978477006 1.0 17.744041861257596 2.1442136822016145 1.2208793728552685 0.8811744998497405 1.069471678665154 0.4323078573119562 0.08553519185576557 0.42367952994512964 1.1948619297735323 0.05619071658714511 0.02940121710638005 139.3842434637376 -2.1442136822016145 0.1882971788154134 QLS(ph)ESESSLEMDDERYFNEMSAQGLRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLSESESSLEMDDERYFNEMSAQGLRPR 28 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 QLS(0.799)ES(0.068)ES(0.065)S(0.068)LEMDDERYFNEMSAQGLRPR;QLS(0.773)ES(0.226)ESSLEMDDERYFNEMSAQGLRPR;QLS(0.989)ES(0.007)ES(0.003)S(0.001)LEMDDERYFNEMSAQGLRPR 325.69 2.890899999999998e-84 573111000.0 44011.0 49473.0 51424.0 60586.0 47454.0 53765.0 48981.2 40169.0 67854.0 49668.0 True False 43774.0496660818 51119.678897939964 58664.05221457926 68256.18138797757 53496.98561810577 50048.35209919646 46611.792229645296 43166.61475404897 51132.290897017156 46498.145717085856 0.9414149530267596 1.0993917737918721 1.261642831340326 1.467933405415276 1.1505186882849863 1.0763515690219465 1.0024441084866247 0.9283513156996128 1.0996630103945946 1.0 15.50488556419797 2.5932365487934756 2.662232663890254 0.9959856160015683 1.2002687664938594 0.28860484407396847 0.13030247063236744 0.3549118826113942 4.915146666761373 0.050764874142007824 0.04636623405961204 391.9553067349484 -2.5932365487934756 0.20428315049229107 QLS(ph)GQSTSSDTTYK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSGQSTSSDTTYK 14 0 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 QLS(0.968)GQS(0.014)T(0.005)S(0.011)S(0.002)DTTYK 95.197 0.0035785 0.0 39384.0 36626.0 32117.0 28202.0 34571.0 46524.0 41587.0 39197.0 43432.0 42100.0 True False 39171.96091997377 37845.07426911544 36638.7944340316 31772.370308383805 38973.411931629234 43307.90538571595 39575.27793223236 42122.079178332984 32728.76555898324 39413.14195637661 0.9938806950060011 0.9602145982424658 0.9296085674819906 0.8061364491963166 0.9888430608949147 1.0988189024272705 1.0041137541390435 1.0687318261750025 0.8304023463850765 1.0 15.266389143087643 3.017221903838529 24.998781213519678 1.0135931513345937 0.922145213142924 0.16951994418953753 0.08015372622373919 364.83453155305153 529578.8731931138 0.023070503229112225 0.027568654045917136 1040.4516513774586 -3.017221903838529 -0.09144793819166974 QLS(ph)KPLSER ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSKPLSER 9 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 QLS(0.942)KPLS(0.058)ER;QLS(0.999)KPLS(0.001)ER 82.85 0.010468 511280000.0 953540.0 776120.0 630060.0 818110.0 815040.0 927690.0 635990.0 747310.0 1213480.0 884160.0 True False 948406.2465882542 801952.6850255519 718766.9714203047 921682.6421172917 918830.5128794401 863560.9738473651 605224.7339822655 803078.0669632884 914434.1137989279 827732.1518325395 1.1457888212854255 0.968855303312897 0.868356955603339 1.1135034927382639 1.110057777561516 1.0432855265263083 0.7311842757857616 0.9702149000559315 1.1047463986682606 1.0 19.658804471946375 QLS(ph)LEGSGLGVEDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLSLEGSGLGVEDLK 15 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 QLS(0.975)LEGS(0.025)GLGVEDLK;QLS(1)LEGSGLGVEDLK;QLS(1)LEGSGLGVEDLK;QLS(1)LEGSGLGVEDLK 245.61 4.3268e-18 793350000.0 792150.0 609020.0 618950.0 576743.0 600650.0 722390.0 743030.0 642140.0 848240.0 681840.0 True False 787885.1524161387 629290.8625396353 706092.7799901568 649758.6046652078 677139.2171685265 672452.8796231479 707086.800249756 690059.7475208492 639202.6178336705 638324.3874474074 1.23430213212879 0.9858480655205792 1.10616607147621 1.0179128628682428 1.0608073739377804 1.053465750090196 1.1077233051949062 1.0810486973250797 1.0013758371190784 1.0 19.283930242044583 4.752519357941673 24.904835077253015 1.0542824318035369 1.2343022604528666 0.634031716138576 0.04249613562554948 1499.8179841905924 2675890.077627836 0.009576019361790172 0.2016226430209887 56561.29677682683 -4.752519357941673 0.18001982864932975 QLS(ph)LEGSGLGVEDLKDNTPSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLSLEGSGLGVEDLKDNTPSGK 22 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 QLS(0.93)LEGS(0.07)GLGVEDLKDNTPSGK;QLS(0.971)LEGS(0.029)GLGVEDLKDNTPSGK;QLS(0.997)LEGS(0.003)GLGVEDLKDNTPSGK;QLS(1)LEGSGLGVEDLKDNTPSGK 264.23 1.095e-37 3644850000.0 2985950.0 2472028.0 2410437.0 2364546.0 2462283.0 3367957.0 2978558.0 2821931.0 4410721.0 3047391.0 True False 2969873.9769702307 2554307.9576075156 2749805.5777060096 2663897.2811576347 2775840.144955251 3135138.059908001 2834473.770343474 3032517.820695271 3323757.910183371 2852903.897377305 1.041000357460501 0.895336138015623 0.9638619724393539 0.9337493925423055 0.9729876101003965 1.0989287311045268 0.9935398710588275 1.0629582803273134 1.165043769346358 1.0 21.443999718587875 2.8545415987932476 5.344865294710469 1.061327444200577 0.9543998039163678 0.4505790153393512 0.056678077986418184 0.2049704971538478 8.25224798168593 0.016832296918945146 0.01792107660315666 715.3879140542264 -2.8545415987932476 -0.10692764028420909 QLS(ph)LPLTQSK ddPTM_BT-474_Trastuzumab_2h_R1 5 QLSLPLTQSK 10 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 1 QLS(1)LPLTQSK;QLS(0.875)LPLT(0.124)QSK;QLS(0.999)LPLT(0.001)QSK;QLS(0.997)LPLT(0.003)QSK;QLS(0.996)LPLT(0.004)QSK 197.25 3.341900000000001e-07 2258110000.0 3691750.0 2890410.0 2567250.0 3226850.0 2714620.0 3092310.0 2829170.0 2642560.0 3888060.0 3249850.0 True False 3671874.0281919874 2986615.5495602596 2928696.485062979 3635368.8791436185 3060310.7661866676 2878545.8882147553 2692312.2386210538 2839761.2458477872 2929899.7103347876 3042441.7906634365 1.2068839047176303 0.9816508433211458 0.9626138104105998 1.1948852695554408 1.0058732349713533 0.9461301435736124 0.8849182412899892 0.9333822768811453 0.9630092905395873 1.0 21.53679823025018 2.9359122265335245 4.28185576728313 0.9371367266448809 1.0732806721341268 0.4101879621576906 0.07827213833288457 0.22520183883617143 8.15260440020482 0.024017278663964532 0.026241220876197062 862.8041523558269 -2.9359122265335245 0.1361439454892459 QLS(ph)MTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSMTLR 7 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4;E5RJQ8;E5RGV7 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 QLS(0.996)MT(0.004)LR;QLS(0.946)MT(0.054)LR 109.66 0.0073191 265580000.0 386510.0 264390.0 206140.0 295280.0 226500.0 216220.0 200270.0 223325.0 281140.0 279260.0 True False 384429.0731052978 273190.0613228701 235162.72019899977 332662.41772425955 255343.43242932032 201273.22032713206 190582.1749943052 239990.64552137174 211856.81408299287 261437.38771348525 1.4704441337464775 1.0449540661042132 0.8994991965599027 1.2724362824831745 0.9766905746057889 0.7698716013323681 0.7289782714749592 0.9179660477038676 0.8103539280891654 1.0 17.99610594767339 3.0115438181841654 5.480181221790764 0.8396136053854386 1.142973867708355 0.4896501981135324 0.15588178965536553 0.1526387978938816 14.890105826426753 0.04598489942694553 0.05334093300626054 1026.9370393541224 -3.0115438181841654 0.30336026232291635 QLS(ph)PQSK ddPTM_BT-474_Trastuzumab_2h_R1 6 QLSPQSK 7 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 QLS(0.977)PQS(0.023)K;QLS(1)PQSK;QLS(0.998)PQS(0.002)K;QLS(0.999)PQS(0.001)K;QLS(0.927)PQS(0.073)K;QLS(0.977)PQS(0.023)K 136.52 0.0031181 18428500000.0 16933700.0 15201400.0 14492700.0 14733100.0 14784500.0 14201000.0 18150900.0 16805900.0 21314900.0 17509400.0 True False 16842530.840710957 15707369.409559665 16533146.187193386 16598308.949381212 16667218.440403033 13219318.295558259 17272871.623828527 18060041.596631024 16062128.500026979 16391935.101448478 1.0274888679386402 0.9582376523789238 1.0086146684251105 1.0125899624818853 1.0167938280166953 0.8064525764496304 1.0537420699220683 1.1017638542892438 0.9798799470971333 1.0 23.966482841801458 QLS(ph)QHEENELAEEPEALADGLCSMK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSQHEENELAEEPEALADGLCSMK 25 0 Q7Z319;A0A499FJN1;A0A499FIS5;Q9BUB5-2;Q9BUB5 Q7Z319 DKFZp686E14208;MKNK1 MAP kinase-interacting serine/threonine-protein kinase 1 1 QLS(1)QHEENELAEEPEALADGLCSMK 96.748 0.0057525 19715000.0 21804.0 22554.0 18959.0 23924.0 21561.0 26652.0 24803.0 23101.0 25324.0 28673.0 True False 21686.60968665214 23304.69625581908 21628.26240541786 26952.775947017013 24306.665547940705 24809.60997205961 23603.184133338753 24824.913924501136 19083.239524214678 26843.064591809667 0.8079036435083176 0.8681831456356808 0.8057299989516494 1.0040871397091085 0.9055100793281678 0.9242465549045208 0.879302884833073 0.9248166817761818 0.7109188095474516 1.0 14.712261768636537 3.838727202761968 22.791438689599147 0.9042124810507277 0.8313624748440805 0.17947124727295016 0.07779755736042679 36.56618931985068 8309.659089845443 0.019058012067404904 0.03435732207514888 6898.063735425344 -3.838727202761968 -0.07285000620664717 QLS(ph)SGVSEIR ddPTM_BT-474_Trastuzumab_2h_R1 13 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 QLS(0.499)S(0.499)GVS(0.002)EIR;QLS(0.975)S(0.025)GVSEIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.499)S(0.499)GVS(0.001)EIR;QLS(0.5)S(0.5)GVS(0.001)EIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.5)S(0.5)GVS(0.001)EIR;QLS(0.5)S(0.5)GVS(0.001)EIR;QLS(0.573)S(0.424)GVS(0.002)EIR;QLS(0.496)S(0.496)GVS(0.007)EIR;QLS(0.499)S(0.499)GVS(0.002)EIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.5)S(0.5)GVSEIR 225.1 3.8358e-09 279553474000.0 26435075.0 24480622.0 22987818.0 25427485.0 21549266.0 24961677.0 23676157.0 19975957.0 25041712.0 24618857.0 True False 26292751.49341297 25295444.704421498 26224302.960704036 28646601.99386123 24293437.29259355 23236135.02245727 22530850.834207043 21466664.347194288 18870517.619349264 23047660.4689961 1.1407991509065396 1.0975276531190286 1.13782928189094 1.2429288444437503 1.0540522030543307 1.0081776002260494 0.9775764817655018 0.9314031841136943 0.818760656628643 1.0 24.45811697664148 2.5812826363428707 1.385718101209286 0.9180609698091037 1.1480471272129347 0.7416221500183722 0.0583248260270808 0.2095919141577126 0.8166336870884933 0.02796263080083682 0.022990051029952337 381.313899547333 -2.5812826363428707 0.229986157403831 QLS(ph)TCQRANSLGDLYAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSTCQRANSLGDLYAQK 18 1 Q13009;Q13009-2 Q13009 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 1 QLS(0.809)T(0.186)CQRANS(0.005)LGDLYAQK 58.479 0.050418 1102100000.0 405700.0 492350.0 460860.0 418760.0 461640.0 512820.0 402750.0 392550.0 408730.0 495070.0 True False 403515.7562775073 508737.5721181394 525745.0821330698 471774.9730635697 520427.11764534784 477369.96044843167 383267.4438455905 421844.07432851015 308003.9682014006 463474.20874924853 0.870632601901306 1.0976610187027247 1.1343567176086629 1.017909873208958 1.1228825850952848 1.029981715135094 0.8269444914311253 0.910178099158779 0.6645547095977431 1.0 18.822129532931992 2.283979318528339 5.666394438202119 0.8493326835023509 1.0558697682448452 0.45393293286348146 0.1046694178714566 0.16014472826676954 11.931434653231275 0.035532841808299645 0.02902006391499971 192.30001518310826 -2.283979318528339 0.20653708474249433 QLSDAISIIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSDAISIIGR 11 0 P55060-3;P55060;P55060-4;P55060-2 P55060-3 CSE1L Exportin-2 0 114.86 0.0017965 0.0 103600.0 116960.0 110970.0 113380.0 98952.0 131850.0 115110.0 94697.0 135230.0 119210.0 False True 103042.22911104205 120852.94289618703 126593.61143146903 127733.89637488661 111552.95066554568 122735.51984151498 109541.68953709738 101763.77100162265 101904.37848916237 111601.9157391842 0.9233016156447861 1.0828930856224965 1.1343318848335966 1.1445493164597922 0.9995612523914648 1.0997617650968485 0.9815395086326152 0.9118460944653183 0.9131059965611598 1.0 16.76800226687003 2.0664385607105173 4.338563369862528 0.9344967636378673 1.0684908361147416 0.4222951385193654 0.0652352725156789 0.18687261893746893 6.992951714858575 0.026480155621193983 0.01852524144195522 116.53021848171177 -2.0664385607105173 0.13399407247687434 QLSES(ph)ESSLEMDDER ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSESESSLEMDDER 15 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 QLS(0.21)ES(0.785)ES(0.002)S(0.002)LEMDDER 125.12 9.6909e-05 361890000.0 93022.0 78525.0 81954.0 83333.0 73618.0 103390.0 101680.0 75450.0 102240.0 103040.0 True False 92521.1798877158 81138.65715563505 93492.41084306221 93882.94925567509 82992.81593192805 96242.89265388118 96761.3499446794 81080.46212733691 77044.32194581056 96463.89898301775 0.9591275167511522 0.8411297699040688 0.969195852839427 0.9732443975979342 0.8603510412381191 0.9977089218716374 1.003083546951736 0.8405264869255487 0.7986855472156899 1.0 16.557701503248502 1.6828660105478106 9.912963067211326 0.8653962906119506 0.9404087308470873 0.13729195828504726 0.06997300990403651 0.18891451012741306 28.374170864572825 0.03237395108102129 0.01743285198757449 48.17991290061314 -1.6828660105478106 0.07501244023513676 QLSES(ph)ESSLEMDDERYFNEMSAQGLRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSESESSLEMDDERYFNEMSAQGLRPR 28 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 QLS(0.007)ES(0.293)ES(0.293)S(0.293)LEMDDERYFNEMS(0.114)AQGLRPR 96.024 0.0016564 87951000.0 23130.0 27050.0 26080.0 29530.0 30147.0 27458.0 27893.0 23152.0 28936.0 32419.0 True False 23005.470649984585 27950.342897929684 29751.837308576294 33268.494972220884 33986.04175473161 25559.893089179524 26543.709028392444 24879.719803473887 21805.110522534986 30349.991664697725 0.758005830912432 0.9209341210607564 0.9802914490807855 1.0961615851419781 1.1198039897409013 0.8421713380208301 0.874587028610863 0.8197603504587875 0.7184552392446977 1.0 14.889408499809619 2.55025854202205 24.930046341191332 0.8401159488653596 0.9792479407736054 0.2283025402027805 0.11302270064294201 196.52638786501802 66988.35950356604 0.038037609568561 0.03586218910237274 355.024677853878 -2.55025854202205 0.13913199190824588 QLSES(ph)FK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSESFK 7 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 QLS(0.002)ES(0.998)FK 63.073 0.085625 205180000.0 387850.0 205650.0 184130.0 201440.0 183790.0 277330.0 240840.0 283240.0 492900.0 331080.0 True False 385761.8586941855 212494.93593194967 210053.90351334927 226942.28334589166 207194.56709132352 258158.82986459887 229189.64910185468 304376.80706357746 371431.39952161635 309950.1909481517 1.2445930667573473 0.6855776900214774 0.6777021264958245 0.7321895258449912 0.6684769783735443 0.832904245275279 0.7394402578064339 0.9820184531342762 1.198358350370396 1.0 18.241676867208316 1.5707416823486375 3.825578316411001 1.09881141671408 0.7828329665206556 0.35498512029004825 0.16580800183894914 0.1811120588231297 6.027486905904676 0.09962372456673652 0.042059988250392685 37.21702741337246 -1.5707416823486375 -0.3159784501934243 QLSESES(ph)SLEMDDER ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSESESSLEMDDER 15 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 QLSESES(0.866)S(0.134)LEMDDER;QLSESES(0.65)S(0.35)LEMDDER 309.81 4.1854e-56 470360000.0 506590.0 512300.0 521960.0 536920.0 544940.0 501200.0 544280.0 485130.0 478930.0 573140.0 True False 503862.57572744 529351.5958081102 595447.431042349 604894.0169483516 614334.8788875656 466553.2236978936 517951.09704848647 521332.86404022493 360904.11883320747 536561.7145101591 0.9390580097341255 0.986562368303465 1.1097463999755333 1.1273521770008783 1.1449472861633587 0.8695238796972721 0.9653150477225854 0.9716177094673313 0.6726236872168303 1.0 19.033384591545754 2.728415590302068 24.843139110927577 0.9063476519719555 1.063703316056459 0.3893977760051005 0.10331984007390195 738.1101291214588 1807480.1811119 0.034059354473325414 0.032441965659479405 535.0761459903309 -2.728415590302068 0.15735566408450352 QLSILVHPDKNQDDADR ddPTM_BT-474_Trastuzumab_2h_R1 4 QLSILVHPDKNQDDADR 17 1 O75937 O75937 DNAJC8 DnaJ homolog subfamily C member 8 0 ;;; 159.95 1.8928e-09 2557360000.0 2617160.0 2811080.0 2681880.0 2840900.0 2603350.0 3099660.0 3078240.0 2697460.0 3921860.0 3313540.0 False True 2603069.5013538124 2904645.0984662543 3059465.392681156 3200557.648715957 2934871.191235628 2885387.8000147953 2929333.7711812574 2898758.162624335 2955370.153231579 3102067.040335685 0.839140311123684 0.936357938335186 0.9862666902099192 1.0317499935042067 0.9461017937633082 0.9301500459198837 0.9443167194943228 0.9344601921661405 0.9527099559111296 1.0 21.564798434845407 4.705507737545256 3.3561629872708973 0.9612791438158995 0.8272873864371337 0.6015636811341811 0.030706344579330025 0.21006480190191434 3.99878964486877 0.008132416375337528 0.06888808420830454 50758.3782241891 -4.705507737545256 -0.13399175737876579 QLSPEDSSS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 3 QLSPEDSSSPVK 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 QLSPEDSS(0.017)S(0.983)PVK;QLSPEDSS(0.048)S(0.952)PVK;QLSPEDSS(0.099)S(0.9)PVK 183.41 1.64e-05 941530000.0 2302760.0 1832320.0 1608610.0 1501890.0 1567910.0 2465740.0 2406290.0 1974000.0 3122790.0 2514640.0 True False 2290362.1960206884 1893307.6635391715 1835088.3057112289 1692029.1200077499 1767574.0447693383 2295289.1975276223 2289888.559779531 2121309.903768894 2353220.247742154 2354153.522308381 0.9729026481564629 0.8042413740641163 0.7795108892948582 0.718742046333758 0.7508321050515566 0.9749955454379039 0.9727014564174071 0.9010924239506816 0.9996035625725413 1.0 21.16677697578842 2.7315016535639165 24.860298104604926 0.9587201295469359 0.7989545267603448 0.589207308833569 0.06824263465742558 392.57854537084216 1382582.2599690408 0.022807825804392178 0.021931764437192313 538.891897184988 -2.7315016535639165 -0.15976560278659102 QLSQHEENELAEEPEALADGLCSMKLS(ph)PPCK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLSQHEENELAEEPEALADGLCSMKLSPPCK 31 1 Q7Z319;A0A499FJN1;A0A499FIS5;Q9BUB5-2;Q9BUB5 Q7Z319 DKFZp686E14208;MKNK1 MAP kinase-interacting serine/threonine-protein kinase 1 1 QLSQHEENELAEEPEALADGLCS(0.03)MKLS(0.97)PPCK;QLSQHEENELAEEPEALADGLCSMKLS(1)PPCK 252.79 1.4741e-58 171968000.0 194359.0 187538.0 197900.0 200724.0 201245.0 283368.0 259413.0 266654.0 385939.0 270719.0 True False 193312.5927393148 193780.08896088504 225762.599822364 226135.6378193047 226872.3578774326 263779.43713652174 246864.20213610487 286553.07552157604 290829.50476764713 253441.48164580355 0.7627504048823321 0.7645949972455649 0.8907878787493749 0.8922597688066706 0.8951666333552194 1.0407903056105312 0.9740481334508186 1.1306478862921403 1.1475213247612523 1.0 17.95129314913997 3.1551902371291365 0.629104561207458 1.1020195655729284 0.7509543112633674 0.808662049615457 0.055718258321797755 0.349089533549631 0.29773470634047744 0.03812318788722918 0.066065316555947 1429.520004293552 -3.1551902371291365 -0.3510652543095609 QLSQQSDGDRDLQEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLSQQSDGDRDLQEHR 16 1 Q8IYI6 Q8IYI6 EXOC8 Exocyst complex component 8 0 60.918 0.053763 179870000.0 50995.0 71045.0 72887.0 66850.0 68843.0 64162.0 61340.0 40285.0 60200.0 58274.0 False True 50720.44858607715 73409.68987739053 83148.85605483885 75313.20314571513 77609.74798557043 59726.631961101884 58372.749858444484 43291.27126308507 45364.51663867176 54554.90342911852 0.929713836850186 1.3456112148153545 1.5241316697200564 1.3805029137952232 1.4225989435836202 1.0947986011688724 1.0699817283021382 0.7935358426457865 0.8315387579709027 1.0 15.73542125226604 2.2809525363990413 1.8036860921566484 0.8649769191468222 1.3333586770656147 0.5768609032558101 0.16111753683805657 0.23639082439750694 1.5530004943103255 0.08129892299601556 0.053666603483412276 190.9644544056913 -2.2809525363990413 0.46838175791879255 QLSSGVSEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ;; 157.78 1.9934e-05 1292130000.0 904790.0 996380.0 832864.0 918393.0 802254.0 989460.0 1046520.0 928524.0 1048420.0 955520.0 False True 899918.7111716187 1029543.9059755697 950124.0118163361 1034661.4596350455 904416.2915679994 921060.9591383055 995895.8295053681 997815.1758293362 790050.9391082431 894537.8955381705 1.0060151902566532 1.150922628444016 1.0621394762093606 1.156643519291683 1.0110430157057637 1.0296500167655596 1.1133075909614973 1.1154532198203098 0.8831944885162567 1.0 19.770783075268426 1.2452229260966445 24.999639085398815 0.9415972295204476 1.0840332527325138 0.4811269900160945 0.05767468901506985 108.37292360104091 406669.79651737784 0.03860194339004173 0.013382357118386094 17.5882619886836 -1.2452229260966445 0.14243602321206628 QLSSTS(ph)PLAPYPTSQMVSSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 QLSSTS(1)PLAPYPTSQMVSSDR;QLSST(0.012)S(0.988)PLAPYPTSQMVSSDR;QLSSTS(1)PLAPYPTSQMVSSDR;QLSST(0.019)S(0.981)PLAPYPTSQMVSSDR 266.35 5.6813999999999984e-37 617760000.0 550878.0 608343.0 599106.0 601292.0 545821.0 578548.0 564709.0 447838.0 558223.0 534674.0 True False 547912.1340562997 628591.3290038904 683454.9172772971 677415.5055481422 615328.0690154699 538554.3385155014 537391.8682721287 481257.94563528534 420656.42145497166 500550.64756255865 1.0946187697975593 1.255799651972939 1.365406119451437 1.3533405837088226 1.2293023133859124 1.0759237674309332 1.073601384573108 0.9614570433157573 0.8403873284419199 1.0 18.933156528094518 2.3531294981762083 1.2821001420021632 0.932285430186556 1.2745918916602286 0.7380959197333126 0.0836656278023708 0.23223458676553885 0.7583177417143658 0.051321167431578545 0.03300045862714071 225.4911482709895 -2.3531294981762083 0.3423064614736726 QLT(ph)QPETHFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QLTQPETHFGR 11 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 1 QLT(1)QPETHFGR;QLT(1)QPETHFGR 193.77 2.9724e-06 1234250000.0 2519100.0 715060.0 496990.0 1163370.0 541290.0 827270.0 503620.0 652700.0 1481990.0 951330.0 True False 2505537.4454983226 738860.3398371013 566961.8720854804 1310652.522716987 610220.0730228116 770082.7720841127 479257.9765847708 701407.7883434437 1116773.42214859 890615.3049254096 2.813265650884099 0.8296066054007257 0.6365956984457665 1.4716258697426674 0.6851668387552787 0.8646637530539725 0.5381200771357835 0.7875541599885122 1.2539346853489357 1.0 19.764442878661225 4.739315449016901 24.917604031335134 0.871644696786396 2.8132662809336955 0.8183714549447669 0.2706928190938107 22.966638834173438 758003.1188470294 0.06303443843339347 0.37885635457478417 54867.53495750469 -4.739315449016901 1.9416215841472995 QLTACPELPHNVQEILGLAPPAEPHS(ph)PS(ph)PT(ph)ASPLPLSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTR 40 0 Q9HA65-2;Q9HA65 Q9HA65-2 TBC1D17 TBC1 domain family member 17 3 QLTACPELPHNVQEILGLAPPAEPHS(0.986)PS(0.966)PT(0.555)AS(0.421)PLPLS(0.058)PT(0.014)R 77.127 0.0022026 52768000.0 17603.0 19527.0 20116.0 20268.0 18709.0 16768.0 19548.0 15530.0 17788.0 17900.0 True False 17508.227403877157 20176.94439067922 22948.157948593573 22833.926721875137 21091.480253069094 15608.867627626274 18602.38855938822 16688.92745974211 13404.385746988264 16757.606675039 1.0447928360770178 1.2040469013235306 1.369417387196204 1.3626007081242106 1.2586212734355164 0.9314496950734732 1.1100862384541512 0.9959016095419408 0.7998985778174716 1.0 14.032528497285504 2.745017491714247 24.544142766888555 0.981493983462456 1.2585834799201847 0.6106675335971425 0.11151312385202365 292.8641179299841 1113247.2672052379 0.03620494735569787 0.03755585028865882 555.92664741037 -2.745017491714247 0.27708949645772873 QLTACPELPHNVQEILGLAPPAEPHS(ph)PS(ph)PTASPLPLSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTR 40 0 Q9HA65-2;Q9HA65 Q9HA65-2 TBC1D17 TBC1 domain family member 17 2 QLTACPELPHNVQEILGLAPPAEPHS(0.93)PS(0.793)PT(0.215)AS(0.059)PLPLS(0.002)PT(0.002)R 72.14 0.0012209000000000002 51808000.0 124090.0 88533.0 77635.0 76922.0 79678.0 110370.0 120340.0 105170.0 178990.0 112890.0 True False 123421.91322769505 91479.76738567137 88565.33318448313 86660.31731300971 89824.52101149384 102740.38168303398 114518.69445655704 113018.319442439 134880.3128431205 105685.2635500086 1.1678251922917688 0.8655867839359135 0.8380102410642654 0.8199848720820326 0.8499247482028588 0.9721353595756408 1.083582427765519 1.0693857936869364 1.2762452239076574 1.0 16.689414699922924 2.2944742173287405 2.290150821504425 1.116683510228605 0.8971355317572224 0.4078239980861852 0.11308700530948522 0.28844294175783625 3.101388401819161 0.04911289679210807 0.03534563230358351 197.00362490079246 -2.2944742173287405 -0.21954797847138263 QLTACPELPHNVQEILGLAPPAEPHS(ph)PSPTAS(ph)PLPLSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTR 40 0 Q9HA65-2;Q9HA65 Q9HA65-2 TBC1D17 TBC1 domain family member 17 2 QLTACPELPHNVQEILGLAPPAEPHS(0.486)PS(0.429)PT(0.276)AS(0.613)PLPLS(0.103)PT(0.092)R 70.312 0.0013847999999999998 104270000.0 12835.0 13626.0 16461.0 15026.0 16107.0 20118.0 14784.0 14613.0 15436.0 17876.0 True False 12765.897786102561 14079.533172909065 18778.5657184231 16928.290059349514 18158.130976331377 18727.29001267803 14068.841439635538 15703.496263310468 11632.004631802949 16735.13837558643 0.762819971941536 0.8413156113156843 1.1221040003958176 1.0115416842949359 1.0850302261510332 1.1190400457039418 0.8406767320286672 0.9383547306796732 0.6950647416678646 1.0 14.030592859641533 -1.1358953475416964 5.196882813835062 1.000001764735664 0.9453826868094483 0.013788580174322163 0.14251198301271148 2.9705701423501625e-06 4.936177299081555e-07 0.14064299653635373 0.03314880127813059 0.07313152881680117 1.1358953475416964 -0.05461907792621579 QLTACPELPHNVQEILGLAPPAEPHS(ph)PSPTASPLPLSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTR 40 0 Q9HA65-2;Q9HA65 Q9HA65-2 TBC1D17 TBC1 domain family member 17 1 QLTACPELPHNVQEILGLAPPAEPHS(0.977)PS(0.019)PT(0.003)AS(0.001)PLPLSPTR 189.79 3.769e-24 536850000.0 196220.0 203460.0 209700.0 213250.0 205430.0 250690.0 225000.0 240530.0 257550.0 260600.0 True False 195163.5733220916 210232.0431058328 239223.93725492535 240247.4281349847 231590.2928209945 233360.39036078454 214115.8904165311 258479.5699865919 194080.253493188 243968.2848891149 0.7999546884169582 0.8617187402099603 0.9805534246537582 0.9847486046974451 0.9492639296384517 0.9565193708143183 0.8776382164339438 1.059480211143315 0.7955142758879445 1.0 17.89633408858938 4.412770072607856 3.7861900077771504 0.9553653883287592 0.8099863300741005 0.34403458770953543 0.06804028302240782 0.20896006803031178 5.841713322327994 0.015725829605519923 0.05380044641515033 25868.43007021427 -4.412770072607856 -0.1453790582546587 QLTQPETHFGR ddPTM_BT-474_Trastuzumab_2h_R1 6 QLTQPETHFGR 11 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ;;;;; 159.99 2.8008e-05 4838020000.0 1803190.0 2312640.0 1977780.0 2092900.0 2154190.0 2294090.0 2082110.0 2074130.0 2344980.0 2231860.0 False True 1793481.8253932423 2389614.824379599 2256234.2328280658 2357860.9254101305 2428513.3276155256 2135504.9580069897 1981390.3848673953 2228912.1128187343 1767091.100122133 2089420.7840085232 0.8583631593596354 1.143673329311465 1.0798371731037888 1.1284758644386645 1.1622902127720096 1.022055956536459 0.9482964848593718 1.0667607644557833 0.8457325176654913 1.0 20.994671632275253 2.4845813730657293 22.485716491508626 0.9808606975689033 1.082712593640768 0.2200160884175275 0.09463044437241686 146.0002032054333 440069.9398092957 0.031074422594840938 0.027103126315181834 305.1977819797329 -2.4845813730657293 0.10185189607186473 QLVAGNS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLVAGNSPK 9 0 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK 81.676 0.021617 784110000.0 1602650.0 1119950.0 946070.0 896470.0 905940.0 1483720.0 1345270.0 1222970.0 2152120.0 1453920.0 True False 1594021.5104711554 1157226.8587259292 1079268.4326121465 1009963.0100828597 1021306.0890729295 1381153.9287011973 1280194.1506695405 1314234.231515828 1621758.862930535 1361129.5808364623 1.1711019530495934 0.8501959512295459 0.7929211500560422 0.7420035713735658 0.7503371489768819 1.014711566148191 0.9405380418540429 0.9655467414852483 1.1914801395572543 1.0 20.376372988650413 1.875781833246188 1.2475098788107133 1.0746654508572464 0.8622579598197999 0.2613106122304152 0.13071897212889141 0.6102376083008245 1.7598990708956141 0.10446199981683264 0.044460539611081644 75.12454129463697 -1.875781833246188 -0.2124074910374465 QLVARPDVVEMHDVTAQDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 QLVARPDVVEMHDVTAQDPK 20 1 Q13435;E9PPJ0 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;;; 199.12 8.9441e-22 2076000000.0 2757750.0 2226740.0 2085350.0 2048900.0 2095370.0 2718930.0 2472620.0 2393040.0 3447420.0 2656510.0 False True 2742902.5804148274 2300855.694807245 2378949.153812866 2308290.529921549 2362202.9492689827 2530976.7687727744 2353009.9242743235 2571620.7964108987 2597849.5340612936 2486969.257447363 1.1029097252412987 0.9251645101431025 0.9565655653719785 0.9281540264356903 0.9498319861394504 1.0176952373631594 0.9461355090048295 1.034038031917782 1.0445844982932113 1.0 21.24595724318283 1.6790768515635859 7.258746064132051 1.029354332799727 0.9715172105845541 0.1698357144873326 0.05090608040189418 0.19421555230131957 19.721411489983883 0.02447246161116392 0.01264251147228189 47.76137834088516 -1.6790768515635859 -0.0578371222151729 QLVEILTTHCDSYWVEMASLQVFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QLVEILTTHCDSYWVEMASLQVFEK 25 0 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;A0A0G2JLQ8;F5H5B1;K7ELX1;K7EJ90;F5H7Q5 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 ; 341.27 2.0306999999999997e-88 82143000.0 72760.0 69070.0 68603.0 64154.0 59786.0 67797.0 73085.0 64044.0 84071.0 70649.0 False True 72368.26824439589 71368.95319630338 78261.7060920344 72275.88982214223 67399.39272061513 63110.352966971484 69549.59933818744 68823.28848884239 63352.828543683994 66140.12033434807 1.0941659597618452 1.0790568997383552 1.1832712988184768 1.0927692519574645 1.0190394631866595 0.9541916864973836 1.0515493317309366 1.0405679357843696 0.957857775634911 1.0 16.013238049898696 3.280462692990023 4.003929518403333 1.008521636130417 1.117768357374961 0.656700594467427 0.03865676739496346 0.14169521898436585 4.788845274728513 0.01145099034956662 0.015285028826707707 1907.4918585085034 -3.280462692990023 0.10924672124454404 QLVHELDEAEYR ddPTM_BT-474_Trastuzumab_2h_R1 6 QLVHELDEAEYR 12 0 Q06323;Q06323-3;Q06323-2;H0YKK6 Q06323 PSME1 Proteasome activator complex subunit 1 0 ;;;;; 210.91 3.8102e-08 18134440000.0 6772170.0 7725350.0 6642020.0 7308690.0 6447200.0 7309560.0 6831170.0 6134800.0 7840440.0 7010860.0 False True 6735709.3891788125 7982483.604677309 7577158.682527211 8233969.404623133 7268212.704451711 6804267.3220534315 6500720.20949642 6592609.927883195 5908268.618513416 6563420.9125007745 1.0262497985387309 1.2162077841867143 1.1544526525939633 1.254524052988985 1.1073817756543056 1.0366952558373848 0.9904469477365174 1.004447225885944 0.900181277001518 1.0 22.64601652549484 2.6766676354950203 2.052964064931841 0.9777690878363889 1.166589161852955 0.6523416746531124 0.06221434754303809 0.1944120130365511 1.61983747006876 0.022612180205627015 0.02141231540085495 474.97159221852064 -2.6766676354950203 0.18882007401656598 QLWGLLIEETEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLWGLLIEETEKR 13 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 130.19 0.00023249 135350000.0 119330.0 126600.0 113700.0 111040.0 118310.0 139680.0 149330.0 131100.0 177680.0 146870.0 False True 118687.5405388094 130813.80446868399 129707.97170188365 125097.65261481238 133376.07722169042 130024.25037135232 142106.33740400264 140883.34771231102 133893.14479002004 137496.63085826702 0.8632032639487274 0.9513964353317736 0.9433538181425551 0.9098234031913434 0.9700316028774253 0.9456540830108244 1.0335259599959752 1.024631271565738 0.9737921864284698 1.0 17.06903674250232 2.6707878800952676 1.3784081485949191 1.0116858258592467 0.9216024102818751 0.5983978871880475 0.03097760346691963 0.27697265087235273 1.0693196697276757 0.013797140974472365 0.012326642122022538 468.5844582872132 -2.6707878800952676 -0.09008341557737165 QLYEFDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLYEFDIK 8 0 H7C3P4;F6S8M0;P15586-2;P15586;H0YFA9 H7C3P4 GNS N-acetylglucosamine-6-sulfatase 0 95.502 0.022345 41396000.0 52485.0 62492.0 54283.0 56624.0 51755.0 65752.0 63335.0 60825.0 61116.0 54783.0 False True 52202.42659163168 64572.00844278828 61925.574563705784 63792.59259421052 58345.6924740815 61206.71900355929 60271.24408680442 65364.07036309172 46054.78071244292 51286.70203791402 1.0178550095313343 1.2590399826265493 1.2074392016458166 1.243842751812184 1.1376378311662363 1.1934227893677356 1.1751826826815364 1.2744837894776488 0.8979867857051254 1.0 15.64629718216665 1.2345336131873215 24.99999427718935 0.9489932948496927 1.1950810791232735 0.6322663781453564 0.07296360342980054 60.71224761603456 376881.53492368414 0.05780781264585208 0.016524834886604122 17.160645236116565 -1.2345336131873215 0.2460877842735808 QLYHLGVVEAYSGLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 QLYHLGVVEAYSGLTK 16 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 92.633 0.0047051 420040000.0 173570.0 152130.0 174460.0 139560.0 170440.0 255140.0 175490.0 141900.0 191570.0 178240.0 False True 172635.51840544 157193.5550854729 199022.451566496 157228.28169059072 192144.52372297272 237502.7723349573 167000.8782630978 152489.2985536 144360.14040648413 166864.57060105875 1.0345846202318076 0.9420427267409126 1.19271844735885 0.9422508392539088 1.1514998242637948 1.4233265424736625 1.0008168759943952 0.9138506634711135 0.8651335624242344 1.0 17.348318142473918 2.007247211359647 24.998068377836642 0.9269003359602805 1.11299683235294 0.29101629114471184 0.13341645693548665 227.91487501847445 786151.1792093534 0.0522195489156429 0.038487405654416156 101.68273318998816 -2.007247211359647 0.18609649639265946 QLYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 QLYLER 6 0 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ; 105.39 0.076811 656590000.0 733800.0 776120.0 706570.0 726040.0 574580.0 705870.0 628270.0 565760.0 940610.0 692240.0 False True 729849.3023328448 801952.6850255519 806048.9143834637 817956.5895574416 647749.3571975213 657074.8683392504 597878.179875528 607979.8840710693 708809.2690282571 648060.6505435187 1.1262052428591849 1.237465481591833 1.2437862315933588 1.262160553755939 0.9995196539926682 1.0139095280482955 0.9225651632668895 0.938152754007153 1.0937390943791903 1.0 19.30576931245992 3.224606551882051 15.31761259073603 0.9839357623479125 1.2207215839430463 0.7936048431516237 0.055480992398404136 0.994609230528916 1091.3816382360362 0.016417138659753833 0.019918683448305705 1677.2837980879176 -3.224606551882051 0.23678582159513384 QLYQTLTDYDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QLYQTLTDYDIR 12 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YF43;A0A2R8Y4H0;A0A2R8Y4D6;V9GYA2;A0A2R8YDY7 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 140.0 0.00013797 138320000.0 136320.0 149950.0 146830.0 165540.0 127490.0 158370.0 117500.0 133320.0 168560.0 134120.0 False True 135586.06826657586 154940.9951033107 167502.3877307614 186497.3470268016 143725.09580756747 147422.25466288012 111816.07610641063 143269.01538524276 127020.64658828096 125560.34677409107 1.079847832138622 1.233996234353203 1.3340389066632055 1.4853204201669556 1.1446694716936274 1.1741147460202792 0.890536534656047 1.1410371113661644 1.0116302626721576 1.0 16.93802139292767 2.693715015476694 2.305196979109377 1.0336709152255084 1.2798752493344587 0.47846098193023223 0.11821265860080914 0.27472551868632783 2.879464308590498 0.043220358726383586 0.04169769013960458 493.9864261646215 -2.693715015476694 0.24620433410895037 QMDTVLS(ph)SSPDVLFDPINGLTPDEEALSNER ddPTM_BT-474_Trastuzumab_2h_R1 2 QMDTVLSSSPDVLFDPINGLTPDEEALSNER 31 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 QMDT(0.011)VLS(0.365)S(0.328)S(0.295)PDVLFDPINGLT(0.001)PDEEALSNER;QMDT(0.016)VLS(0.377)S(0.304)S(0.304)PDVLFDPINGLTPDEEALSNER 87.719 0.000406 23439000.0 12400.7 16968.5 13660.6 14410.0 13977.599999999999 14078.3 14217.5 12950.7 14932.0 13486.3 True False 12333.936009047287 17533.286264825136 15583.893739936248 16234.304522509416 15757.564508274023 13105.100257753524 13529.745208875687 13917.146996322102 11252.208678548956 12625.59278779768 0.9768995576166316 1.388709944912101 1.234309865830434 1.2858251327572885 1.2480653204262468 1.037979006452614 1.071612670887964 1.1022965202689476 0.8912222077543903 1.0 13.624063505389252 2.736909760890752 24.019485637500548 1.037360627290791 1.239459697470047 0.46104469264104875 0.11027524891981605 76.90371686496906 1118916.7737923814 0.033231078848896534 0.032889969771851844 545.6444735417417 -2.736909760890752 0.202099070179256 QMDTVLSSS(ph)PDVLFDPINGLTPDEEALSNER ddPTM_BT-474_Trastuzumab_2h_R1 7 QMDTVLSSSPDVLFDPINGLTPDEEALSNER 31 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 QMDT(0.001)VLS(0.026)S(0.145)S(0.828)PDVLFDPINGLTPDEEALSNER;QMDT(0.001)VLS(0.154)S(0.121)S(0.725)PDVLFDPINGLTPDEEALSNER;QMDTVLS(0.025)S(0.132)S(0.843)PDVLFDPINGLTPDEEALSNER;QMDTVLS(0.001)S(0.019)S(0.98)PDVLFDPINGLTPDEEALSNER;QMDTVLSS(0.028)S(0.972)PDVLFDPINGLTPDEEALSNER;QMDTVLSS(0.004)S(0.996)PDVLFDPINGLTPDEEALSNER;QMDTVLSS(0.003)S(0.997)PDVLFDPINGLTPDEEALSNER 249.13 9.6996e-47 628919000.0 308977.6 321703.4 301977.6 335202.9 299498.8 352984.2 345758.7 289531.1 360930.8 357080.0 True False 307314.0989322386 332411.10319518833 344493.4212436475 377639.55277087225 337638.19691153377 328583.23308942944 329033.03075449896 311137.3808911355 271984.2405649356 334290.84868843155 0.9193015607156627 0.9943769160878371 1.030520047423509 1.1296736188038545 1.0100132810582023 0.982926198484357 0.9842717263886783 0.9307385533042942 0.8136155734805428 1.0 18.350744335726176 1.8407888193206907 1.942557236506205 0.901053339682219 1.0170980363299689 0.3063946113727658 0.06466184596017856 0.3690626859271126 2.6442979258268022 0.042996931111721544 0.01934007135002366 69.30887017220778 -1.8407888193206907 0.11604469664774986 QMEKDETVSDCSPHIANIGR ddPTM_BT-474_Trastuzumab_2h_R1 5 QMEKDETVSDCSPHIANIGR 20 1 P47756-2;B1AK88;B1AK87;P47756;B1AK85 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ;;;; 172.0 4.2080000000000015e-12 4487790000.0 2518737.0 2402563.0 2342672.0 2560664.0 2408527.0 3026790.0 2961288.0 2669769.0 3590280.0 3101500.0 False True 2505176.399849989 2482530.857074997 2672499.8547299434 2884843.799849202 2715238.636992021 2817555.1315972665 2818039.1862212815 2869000.7195922905 2705503.601287219 2903559.6146722604 0.8627948905167429 0.8549956558598893 0.9204218991148911 0.9935541826906243 0.9351413428094894 0.9703796393088001 0.9705463500667156 0.9880977490851791 0.9317885493432871 1.0 21.469391224480365 4.051852883708483 3.219584942563206 0.9690968283320771 0.8586105801402196 0.8086100242886544 0.021530711989973368 0.09036513013169417 1.9084697019426222 0.005301075457380978 0.01271427165595646 11268.156852055372 -4.051852883708483 -0.11048624819185748 QMEQISQFLQAAER ddPTM_BT-474_Trastuzumab_2h_R1 1 QMEQISQFLQAAER 14 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 121.56 0.00026489 27658000.0 29322.0 32950.0 26813.0 27390.0 28600.0 33980.0 27419.0 29088.0 36891.0 30472.0 False True 29164.133609980458 34046.72083130438 30588.037337226076 30857.57119164001 32242.04047451901 31631.04258031614 26092.63821924829 31258.694265871138 27799.707364073754 28527.25087160826 1.022325415836198 1.1934806120834227 1.0722392239929721 1.081687518033888 1.1302189832322012 1.1088009399390437 0.9146565975348498 1.095748567100146 0.9744965432943771 1.0 14.800053102809862 2.3179674278769187 24.99988835900799 1.0108087788407616 1.1047228371206526 0.4243345975609093 0.05900446724924304 31.296434201818634 9851.225645813054 0.019223973299756468 0.01608392299185258 207.95407155242899 -2.3179674278769187 0.09391405827989097 QMFLTQTDTGDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QMFLTQTDTGDDR 13 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 100.38 0.0029170000000000003 0.0 92380.0 103540.0 97611.0 103500.0 90443.0 110600.0 93209.0 95724.0 125900.0 107830.0 False True 91882.63634438298 106986.26630874819 111353.7803499786 116603.08938790599 101960.37995234007 102954.48232439572 88700.12457704202 102867.41095662292 94873.63197356771 100948.19708209249 0.910195912361493 1.0598135420065546 1.1030784458629226 1.1550784734974784 1.0100267553012805 1.0198744039051206 0.8786697250760193 1.0190118687604663 0.9398249271991964 1.0 16.623255619044272 2.6927475220217985 2.641396923113112 0.964593065696139 1.0599093230357695 0.24856412078662227 0.06967400631162929 0.38095023414728785 5.262521445164769 0.02455163933349149 0.02377379161607465 492.887179686271 -2.6927475220217985 0.09531625733963045 QMGFPLIYVEAEQVEDDR ddPTM_BT-474_Trastuzumab_2h_R1 3 QMGFPLIYVEAEQVEDDR 18 0 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ;; 128.96 5.1654e-05 126430000.0 75489.0 84514.0 87666.0 83056.0 84871.0 87157.0 71302.0 74989.0 96605.0 87658.0 False True 75082.57561161641 87326.99740020813 100008.61079346809 93570.88108407639 95678.81878017154 81132.04173550944 67852.84985990888 80585.05996642642 72797.99219067923 82063.59139221055 0.91493163213843 1.0641381387129638 1.218672118741331 1.1402240566936497 1.165910693853125 0.988648441520809 0.826832566169526 0.9819831011450898 0.8870924481327195 1.0 16.324454672585098 2.5371124156029423 5.394640407744158 0.92316177149561 1.1061537141175057 0.48062899986931595 0.08707781965738662 0.18255716090577728 10.998151132656133 0.029573136006989437 0.027366563409629143 344.4390760717612 -2.5371124156029423 0.18299194262189578 QMNMS(ph)PPPGNAGPVIMSIEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QMNMSPPPGNAGPVIMSIEEK 21 0 Q92843-2;Q86U42-2;Q86U42;B4DEH8;G3V4T2 Q92843-2 PABPN1 Polyadenylate-binding protein 2 1 QMNMS(1)PPPGNAGPVIMSIEEK;QMNMS(1)PPPGNAGPVIMSIEEK 170.27 5.4258e-12 305535000.0 430728.0 308377.0 266555.0 273715.0 263238.0 333437.0 275382.0 309201.0 438952.0 367203.0 True False 428409.0083063797 318641.14202716673 304083.6270624057 308367.2909353687 296759.7989661339 310387.2850162706 262060.7205986007 332275.1487108644 330778.1612554524 343767.7901616947 1.246216255760533 0.9269080790765494 0.8845611362233118 0.8970220589611522 0.863256557068799 0.9028981012743421 0.7623190074769302 0.9665685914162447 0.9622139441856012 1.0 18.391074850111096 4.738979826191949 4.114218199626095 0.8982168315164735 1.2755805028410796 0.7260189580364089 0.062479899596617657 0.11007997114246428 4.086503248754623 0.01463500590198236 0.12329882803623982 54825.14970003172 -4.738979826191949 0.37736367132460613 QMNPHIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QMNPHIR 7 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 94.262 0.01433 292676000.0 188878.0 292118.0 311559.0 303662.0 246668.0 240869.0 289190.0 216039.0 364251.0 296027.0 False True 187861.10183431878 301840.97104093974 355423.7990806257 342105.5780648338 278079.70768421865 224218.29297463724 275200.77488691837 232160.92720381363 274486.22176333604 277134.3034185342 0.677870258271878 1.0891505213091321 1.2824965899073741 1.2344396700259028 1.003411357793036 0.8090600485354493 0.9930231353254895 0.837719922579195 0.9904447712804467 1.0 18.08022577171881 2.999777199397452 24.998773710990438 0.9143524698991219 1.0913355906388582 0.14411179648467043 0.1625587012195345 13.224140836480796 1484091.3132494113 0.04830332544239149 0.05716263728073086 999.4871142247608 -2.999777199397452 0.17698312073973632 QMQLENVSVALEFLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QMQLENVSVALEFLDR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4 Q60FE5;O75369-8 FLNA;FLNB Filamin-A;Filamin-B 0 135.02 7.3638e-05 0.0 28651.0 24456.0 20005.0 20749.0 23467.0 27627.0 26188.0 22038.0 38763.0 35811.0 False True 28496.74619942536 25270.00317603581 22821.530113422858 23375.821272557114 26455.383350193628 25717.21051696273 24921.186392124968 23682.5874666965 29210.378047588587 33525.51132066041 0.8500018367166253 0.7537544449161895 0.6807213138419421 0.6972547278690288 0.7891120018172625 0.7670937594653257 0.7433499269783562 0.7064049595002563 0.8712880697985782 1.0 15.032971715382573 1.0042452344364177 3.916791933316813 0.999311944219696 0.7450946592977836 0.7463861295369796 0.046616912340269136 0.08911670968070569 3.6367202025773286 0.04596662714991198 0.011792680940386253 10.098229450240119 -1.0042452344364177 -0.2542172849219124 QMQVLHPAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QMQVLHPAAR 10 0 P50991 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 78.655 0.029351 683040000.0 468290.0 582790.0 579850.0 514010.0 442600.0 486450.0 524340.0 420250.0 658940.0 532760.0 False True 465768.7786719106 602187.8128460051 661487.8398534495 579083.6132973677 498962.4865042696 452822.8564801289 498975.6710266834 451611.1889862598 496553.06634362735 498758.80068121676 0.9338557596091586 1.2073728063014075 1.326268005597041 1.161049414078391 1.0004083854215196 0.9078994813959224 1.0004348200877267 0.9054701157542251 0.9955775530485341 1.0 18.927982772588095 3.1898164300964016 4.024161381827357 0.9555003198703856 1.1744753807404238 0.47961972375823414 0.09624076833315794 0.1713888514190167 5.757799922735449 0.028541711036453445 0.0357769950579962 1548.1620951973289 -3.1898164300964016 0.21897506087003815 QMS(ph)LCGTPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QMSLCGTPEK 10 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 QMS(0.966)LCGT(0.034)PEK 78.324 0.023105 0.0 85319.0 61971.0 59400.0 65374.0 54179.0 78428.0 74080.0 72921.0 114690.0 85858.0 True False 84859.65198383201 64033.66727273938 67763.00368594441 73650.34169705265 61078.37450590785 73006.45695965375 70496.46738691824 78362.73530533505 86426.1862672635 80378.46893326806 1.0557510376850339 0.7966519905461439 0.8430491969460469 0.9162944091184264 0.7598847715874811 0.9082837472341665 0.8770566088469032 0.9749219703400109 1.0752405142105455 1.0 16.294521476435797 1.5959895291107915 2.8386050288833853 1.0372231724286054 0.8720045415196152 0.41089905911883207 0.07702393680144778 0.20063491735987482 3.732363230327042 0.04964191395733072 0.01958830376157059 39.44477917796408 -1.5959895291107915 -0.16521863090899025 QMVEHGGFYR ddPTM_BT-474_Trastuzumab_2h_R1 4 QMVEHGGFYR 10 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 161.67 7.0026e-06 1044740000.0 852620.0 886890.0 843130.0 882070.0 772630.0 837150.0 839530.0 753360.0 945750.0 878740.0 False True 848029.5886549883 916409.5975136727 961835.3753826644 993739.9715593248 871019.8507632036 779279.79093913 798918.7265839569 809579.5486845673 712682.5849007285 822658.0608728353 1.0308409155503004 1.1139617310032404 1.1691800288957999 1.2079623586316925 1.058787231524914 0.9472705951635833 0.9711431329516286 0.9841021284415644 0.8663169046743145 1.0 19.649933371192834 2.923405307633554 3.805662624306308 0.9575781412156065 1.1326561030350466 0.7029220355877879 0.05417192155972279 0.13359637376944267 3.683034424210552 0.017381430452261988 0.019008229182976216 838.3112756240141 -2.923405307633554 0.17507796181944013 QMVETELK ddPTM_BT-474_Trastuzumab_2h_R1 2 QMVETELK 8 0 P62258;P62258-2;K7EIT4 P62258 YWHAE 14-3-3 protein epsilon 0 ; 83.265 0.042536 243360000.0 392670.0 323480.0 320320.0 317320.0 308750.0 389520.0 392970.0 338510.0 444130.0 367170.0 False True 390555.9083497379 334246.83625221055 365418.27172864816 357492.6794644476 348067.4823953755 362593.3992314523 373960.5398088187 363771.335118951 334680.1125370976 343736.89624994766 1.1362059546431287 0.9723915002978428 1.0630754967396194 1.040018349396212 1.0125985490433906 1.0548573725637913 1.087926678481713 1.0582842257772507 0.9736519884491409 1.0 18.39094519137805 1.2418562304064056 24.999602833709027 0.98682597904484 1.0511978794080763 0.292578209542122 0.04117342673220559 95.86013843423878 727214.0599414769 0.02834464720847937 0.009393813756480733 17.452443085974533 -1.2418562304064056 0.06437190036323626 QMVIDVLHPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 QMVIDVLHPGK 11 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4 E7ETK0 RPS24 40S ribosomal protein S24 0 ; 124.38 0.00035039999999999995 3044700000.0 3263600.0 3034600.0 2731500.0 2673400.0 2583700.0 3083900.0 2833800.0 2775200.0 3474700.0 3017800.0 False True 3246029.1402200507 3135604.826545562 3116071.457376383 3011852.1658901246 2912718.880210308 2870717.2517197463 2696718.2678327383 2982299.516180055 2618406.743594566 2825201.4203314353 1.1489549441891638 1.1098694783247391 1.1029555043232366 1.0660663498947245 1.030977423149039 1.016110650044545 0.9545224805657841 1.055605980769396 0.9268035633676662 1.0 21.4299222962341 3.594857776746461 0.7371721060006099 0.9892812841318627 1.152264258725847 0.7620393592184068 0.032356759341281426 0.4411861661681568 0.4518961009328572 0.01569915750622414 0.0470929424675429 3934.2121632767116 -3.594857776746461 0.16298297459398425 QNAQCLHGDIAQSQR ddPTM_BT-474_Trastuzumab_2h_R1 3 QNAQCLHGDIAQSQR 15 0 Q9BQ39;A0A087WVC1 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 0 ;; 162.41 1.5967e-06 200193000.0 154538.0 173279.0 170451.0 177938.0 188839.0 189762.0 172568.0 169043.0 191811.0 195837.0 False True 153705.98457878584 179046.48676563238 194449.01921334857 200464.93255560574 212886.52731355565 176644.19959169943 164220.2265662219 181657.84704296122 144541.74918571863 183338.51499550906 0.838372584083333 0.9765895985904445 1.0606010374749226 1.0934141828328663 1.1611664211350812 0.9634865843438647 0.8957213740399531 0.9908329793519436 0.7883872583415396 1.0 17.484150367549407 2.4878534728899346 24.09837728045374 0.9255609736432054 1.0322844665660305 0.2175274764976003 0.09558326126899676 518.9183980487718 1165195.7601255144 0.0330242659923175 0.029371980670829002 307.50591419922523 -2.4878534728899346 0.10672349292282501 QNAVLQAAQDDLGHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QNAVLQAAQDDLGHLR 16 0 Q15276-2;Q15276 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 ; 131.56 4.3903e-05 314582000.0 120544.0 132300.0 135775.0 157483.0 140758.0 137343.0 147188.0 107973.0 134186.0 145537.0 False True 119895.00449769755 136703.5255229611 154890.939822544 177420.33165290428 158682.69696197033 127848.80168064607 140067.9541272373 116030.49353578455 101117.65830027925 136248.70405950572 0.8799717056048783 1.003338170932303 1.1368250501296246 1.3021799574359043 1.16465472502892 0.9383487539434426 1.0280314597786084 0.8516080526175794 0.7421550098275927 1.0 17.055882982081854 2.099658103599241 1.5848474544530606 0.8533318482568089 1.0966441223939627 0.34918736759163915 0.12612664907414597 0.42743808954354334 2.043460479757289 0.082026245267571 0.0434914897389951 125.79347183693926 -2.099658103599241 0.24331227413715384 QNEEFRPFIR ddPTM_BT-474_Trastuzumab_2h_R1 4 QNEEFRPFIR 10 1 O15258;Q5T092;A0A0A0MR06;Q5T091 O15258 RER1 Protein RER1 0 ;;; 149.96 2.0449e-05 1680130000.0 1468500.0 1869850.0 1767330.0 1763200.0 1745990.0 1784240.0 1640400.0 1577770.0 1913740.0 1704620.0 False True 1460593.7591656896 1932086.8269018072 2016154.7020922597 1986420.9392150298 1968331.477206482 1660899.688449183 1561047.5850634573 1695511.2091537241 1442124.419802189 1595829.6922013944 0.9152566632287991 1.21070991243217 1.2633896411032688 1.2447574756394135 1.233422016663466 1.0407750254088999 0.9782043739956008 1.062463756276412 0.9036831604585738 1.0 20.60587526391279 2.6078141634978187 4.658152085080013 0.9996706820009523 1.183939674962775 0.44203505224680295 0.09964690700571005 0.2216987185388482 7.442976992309217 0.03344044899776997 0.03129381015433841 405.3350536976332 -2.6078141634978187 0.18426899296182275 QNGDDPLLTYR ddPTM_BT-474_Trastuzumab_2h_R1 5 QNGDDPLLTYR 11 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;; 238.73 2.9545e-15 1957900000.0 1615237.0 1799980.0 1773840.0 1777900.0 1637540.0 1780120.0 1873500.0 1688570.0 1848650.0 1708560.0 False True 1606540.743461701 1859891.2461891132 2023581.2535063268 2002981.957707807 1846071.0125399933 1657064.4943517463 1782871.647534984 1814579.6677847244 1393074.9781408734 1599518.2380281896 1.004390387847136 1.1627821440047468 1.265119212395416 1.2522407748079123 1.1541418963848404 1.0359772429944263 1.1146303962953394 1.1344538778261462 0.8709341006690804 1.0 20.609206011770144 1.2520847731019127 23.905176890155538 0.9354671308283431 1.1442217967438657 0.4993684311330179 0.08203472477452674 98.4877368874546 174089.44076471654 0.05854737101180976 0.02108569549496112 17.868363264053272 -1.2520847731019127 0.2087546659155226 QNGSNDS(ph)DRYS(ph)DNEEDSKIELK ddPTM_BT-474_Trastuzumab_2h_R1 1 QNGSNDSDRYSDNEEDSKIELK 22 2 P42167;G5E972;H0YJH7;P42167-3;P42167-2 P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 2 QNGS(0.213)NDS(0.787)DRYS(1)DNEEDSKIELK 163.49 8.0614e-12 360750000.0 230190.0 168110.0 191160.0 121320.0 180860.0 350580.0 242910.0 240800.0 400100.0 256040.0 True False 228950.68261651328 173705.4397253588 218073.66640749396 136679.09956078028 203891.448958794 326345.2297765515 231159.51529368703 258769.7187576237 301500.7160653248 239699.3079931275 0.9551578789834371 0.7246806057960716 0.9097801250796537 0.5702106556131529 0.850613423400621 1.3614775633224117 0.964372893810418 1.0795597239064327 1.257828896502151 1.0 17.87086621839956 2.939340368496517 10.014755677872504 1.117706042368777 0.7834769301203113 0.5642357550589956 0.1456885598888448 0.4285141678156088 69.31054647759798 0.04236301876540403 0.04501145912474485 869.6417243469597 -2.939340368496517 -0.33422911224846574 QNGSNDSDRYS(ph)DNEEDSKIELK ddPTM_BT-474_Trastuzumab_2h_R1 6 QNGSNDSDRYSDNEEDSKIELK 22 2 P42167;G5E972;H0YJH7;P42167-3;P42167-2 P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 1 QNGSNDSDRYS(0.997)DNEEDS(0.003)KIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDSDRY(0.002)S(0.997)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDSDRY(0.001)S(0.999)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK 313.49 1.488e-67 7737940000.0 5230550.0 4201180.0 4643290.0 3314480.0 4600290.0 7785790.0 6076870.0 5357370.0 8927860.0 5850880.0 True False 5202389.2999687325 4341013.736633064 5297024.87179981 3734092.8281587083 5186109.6634449335 7247576.663078264 5782908.582202246 5757164.153573641 6727708.530194878 5477471.8292096155 0.9497792890921035 0.7925214171771398 0.9670565247916859 0.68171830811543 0.946807181333012 1.3231609196836471 1.055762359445435 1.0510623026616979 1.2282506857120008 1.0 22.38507872873792 2.9900226215441905 24.943971776107997 1.1227988241675153 0.8475831148592948 0.5807309683710109 0.11456243282006937 324.8845369386235 812231.1191739687 0.032348132991966295 0.03656400087310619 977.2881246436416 -2.9900226215441905 -0.2752157093082205 QNGSNDSDRYS(ph)DNEEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 QNGSNDSDRYSDNEEGK 17 1 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin 1 QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK 311.27 2.4217e-58 5089680000.0 4007580.0 2681342.0 2609624.0 2302868.0 2490946.0 3665650.0 3484700.0 3355810.0 4500520.0 3521270.0 True False 3986003.6345639927 2770588.847564532 2977036.3759415685 2594410.8526816224 2808153.208106338 3412252.243511943 3316131.748153273 3606237.5826578955 3391427.1498783263 3296539.5338890846 1.2091478332315082 0.8404536997303765 0.903079227576991 0.7870103865009234 0.8518487884759041 1.0351012655644833 1.0059432668902577 1.0939464082214252 1.0287840066875515 1.0 21.65252095236867 2.7190520175551773 21.161128582022457 1.0408393380793597 0.9058424268468003 0.2097695021481093 0.10917786713825012 155.43262138791653 168597.30900272116 0.0350239933872372 0.03310591169846202 523.6631545039367 -2.7190520175551773 -0.1349969112325594 QNGSNDSDRYS(ph)DNEEGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QNGSNDSDRYSDNEEGKK 18 2 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin 1 QNGSNDSDRYS(1)DNEEGKK 115.66 9.5479e-05 111940000.0 118170.0 62759.0 63795.0 62171.0 59081.0 107880.0 93703.0 91724.0 152500.0 88468.0 True False 117533.78584992114 64847.895376383334 72776.78148391962 70041.84222546383 66604.61514947757 100422.50952220432 89170.2279097787 98568.91064503454 114918.41839530635 82821.89649873461 1.4191148816752448 0.782980082777676 0.8787142598821259 0.8456923251755526 0.8041908959485754 1.2125115913487758 1.0766503989816398 1.1901310500241988 1.3875366690868052 1.0 16.337724618214658 2.725524836978543 24.648495594024187 1.1772662561361402 0.9277479991136587 0.25397464073674514 0.1933833615086223 830.6211671895804 1570564.3534276162 0.060655111875073865 0.057523079097887404 531.5263962368929 -2.725524836978543 -0.24951825702248154 QNGSNDSDRYS(ph)DNEEGKKK ddPTM_BT-474_Trastuzumab_2h_R1 4 QNGSNDSDRYSDNEEGKKK 19 3 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin 1 QNGSNDS(0.046)DRYS(0.954)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK 205.02 3.0772e-16 1304460000.0 1083560.0 634237.0 552072.0 632240.0 574071.0 1037030.0 1077730.0 942050.0 2022970.0 977120.0 True False 1077726.2333548341 655347.1951406377 629798.9389041528 712281.519174972 647175.539064602 965342.5570060387 1025596.0825715915 1012350.5546329723 1524436.1499092004 914759.3650454794 1.1781527192140333 0.7164148520174545 0.6884859154984884 0.778654525323782 0.7074817310369117 1.0552967194362033 1.121164889654452 1.1066850948092135 1.6664887052929045 1.0 19.803032754977135 2.245598076586948 1.4167542531224162 1.2726318926084965 0.8012043984071986 0.45667874930397556 0.21069460517606114 0.3643052368321843 1.4334431685608942 0.1208611620253066 0.07151584794624666 176.0346157338722 -2.245598076586948 -0.4714274942012979 QNKPTGFALGSIEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QNKPTGFALGSIEGR 15 1 P78406;E9PQ57 P78406 RAE1 mRNA export factor 0 ; 150.28 2.927e-06 2892100000.0 1363750.0 1327130.0 1353230.0 1235310.0 1298300.0 1489610.0 1460110.0 1386290.0 1628900.0 1447730.0 False True 1356407.7215268693 1371302.7197829746 1543753.0215139845 1391700.1193408137 1463630.8093730076 1386636.766864765 1389478.901138139 1489741.9992379826 1227479.4211417353 1355334.6319359874 1.0007917525056886 1.0117816570688363 1.1390198295965155 1.0268313717866717 1.0799036451111175 1.023095502904744 1.025192501097223 1.0991691381116744 0.9056652078523064 1.0 20.370217666092632 1.2387833567095106 24.99999985213856 0.9528326007240894 1.0526415835480671 0.4161497992936374 0.046334986952908885 5.2411239829923275 588860.3709945028 0.03453638373478422 0.010786633389335925 17.329393233268974 -1.2387833567095106 0.09980898282397777 QNLFQEAEEFLYR ddPTM_BT-474_Trastuzumab_2h_R1 7 QNLFQEAEEFLYR 13 0 A0A087X1Z3;Q9UL46 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 ;;;;;; 333.63 3.7566999999999996e-62 933859400.0 453582.2 451224.6 383905.0 374987.7 376648.3 421601.0 337095.3 343400.6 495756.0 415504.1 False True 451140.1638329198 466243.3380399697 437955.4870379211 422461.10437164456 424612.22843562154 392456.71521200286 320788.7125099008 369026.8965249143 373583.5765900554 388986.2726070432 1.1597842792994006 1.1986112900980752 1.1258893125011302 1.086056588938854 1.091586666001882 1.0089217611246284 0.8246787485839222 0.948688739198023 0.9604029830827792 1.0 18.569359717588664 2.835859229588217 1.5517880069866934 0.9269599165672324 1.15215504624083 0.7746806839844271 0.050962300738026434 0.17138572145396316 0.8323839671275688 0.020418315997296262 0.02131466039647198 685.2660711487401 -2.835859229588217 0.22519512967359767 QNLHEIGER ddPTM_BT-474_Trastuzumab_2h_R1 2 QNLHEIGER 9 0 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-6 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 0 ; 119.16 0.00087304 741240000.0 175780.0 203145.0 204334.0 177722.0 197532.0 200825.0 201488.0 193254.0 213647.0 197793.0 False True 174833.620010994 209906.55852125445 233102.45109703325 200221.586977753 222686.52933610807 186942.4404412003 191741.25568109337 207675.59480392796 160996.559573128 185169.68140089297 0.9441805952696902 1.1335903206897358 1.258858628116153 1.0812870955060543 1.2026079412751756 1.0095737003320178 1.035489472307148 1.1215421079345578 0.8694542127799525 1.0 17.49848837393513 2.7168840866758925 24.47601933874916 1.0258482105007272 1.129739437569242 0.2567141708352123 0.09665323656870363 980.3381941093343 1106945.5028073655 0.031222453052237528 0.029462684575108058 521.0556226466102 -2.7168840866758925 0.10389122706851484 QNLNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QNLNDR 6 0 K7EMD9 K7EMD9 KRT13 0 97.602 0.095116 438660000.0 427540.0 411700.0 309370.0 410400.0 538070.0 397270.0 415770.0 397370.0 407860.0 505290.0 False True 425238.1721441597 425403.18562209443 352926.60690775514 462356.59792073997 606590.0251092463 369807.65997298923 395657.6167043603 427023.7672039744 307348.36804399756 473041.95959946635 0.8989438748820865 0.8992927096410039 0.7460788620243853 0.9774113871679081 1.2823175889573466 0.7817650262697889 0.8364112499436015 0.9027185824393751 0.6497274962758807 1.0 18.85160863309919 -1.6116661610034495 6.862039484072029 1.0002330776782602 0.8922855343862415 0.042536099242277636 0.15972514146840577 0.0005700700864022496 3.226120902023622e-05 0.15479173436853988 0.036406473470286076 0.02445309521997721 1.6116661610034495 -0.10794754329201872 QNPEQS(ph)ADEDAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QNPEQSADEDAEK 13 0 Q99613-2;Q99613;B5ME19;H3BPE3 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 QNPEQS(1)ADEDAEK;QNPEQS(1)ADEDAEK 214.82 3.1667e-11 1051070000.0 1097450.0 747500.0 762020.0 660430.0 681570.0 917760.0 808440.0 872610.0 1059450.0 853440.0 True False 1091541.4511381576 772380.0856267074 869305.7924034233 744040.3702845863 768363.8995181094 854317.4113746596 769332.668659291 937728.5892237962 798362.7434026713 798972.7285332559 1.3661811125168137 0.9667164573246863 1.0880293674094283 0.9312462662530251 0.9616897699733284 1.0692698021658447 0.9629022883817603 1.1736678308723585 0.9992365382336587 1.0 19.60778673468481 4.744727687446093 24.842748701426306 1.0260892093622382 1.3661812769859172 0.687520004554933 0.07038643370156063 379.7002434496512 1529496.4588347375 0.0171749236000486 0.15847701582797513 55555.58018674858 -4.744727687446093 0.34009206762367894 QNPHDGVVTPAAS(ph)PSLPQPGLQMPGQWGPVQGGPQPSGQHR ddPTM_BT-474_Trastuzumab_2h_R1 3 QNPHDGVVTPAASPSLPQPGLQMPGQWGPVQGGPQPSGQHR 41 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 QNPHDGVVTPAAS(0.947)PS(0.053)LPQPGLQMPGQWGPVQGGPQPSGQHR;QNPHDGVVTPAAS(0.995)PS(0.005)LPQPGLQMPGQWGPVQGGPQPSGQHR;QNPHDGVVTPAAS(1)PSLPQPGLQMPGQWGPVQGGPQPSGQHR 321.5 5.1348e-114 2271670000.0 47399.0 54185.0 57578.0 55224.0 67913.0 47991.0 60152.0 45843.0 39043.0 44420.0 True False 47143.80905052397 55988.51496947581 65684.48192305237 62215.352737755704 76561.31799811216 44673.495128662515 57242.21795704524 49264.037446037204 29421.37579939638 41585.07757012468 1.1336713024287528 1.3463607197813372 1.5795204857388807 1.4960980325897506 1.8410767148145208 1.0742674473392493 1.376508625251883 1.1846566202254531 0.7074983989096396 1.0 15.343778302680866 2.6898339713163684 24.99993910056849 1.114177502594859 1.4784537291693698 0.4360208435150852 0.2306831163768913 426.72226182979045 218935.79454182746 0.07698795978719816 0.07258507567937124 489.5916150764118 -2.6898339713163684 0.36427622657451075 QNPHHVHEWHK ddPTM_BT-474_Trastuzumab_2h_R1 2 QNPHHVHEWHK 11 0 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 0 ; 110.66 0.00061334 39189000.0 76289.0 98280.0 87762.0 83104.0 83652.0 81777.0 85229.0 33380.7 91585.0 51116.0 False True 75878.26850050464 101551.19038848548 100118.1267590211 93624.95787915496 94304.58635575043 76123.94847235165 81106.14766360226 35871.73733776004 69015.1039261255 47853.733117390686 1.5856290315818529 2.1221163694662817 2.0921696226586937 1.956481799434168 1.970684003365223 1.5907630087209892 1.6948760813422767 0.7496120992224903 1.442209404161292 1.0 15.546343854728196 2.098039868451009 1.737764820733851 1.047243126881962 1.9489231460658623 0.6891383185231621 0.24254946628421392 0.1841899516454226 1.0633989768368786 0.13460103930104642 0.07321982707764771 125.32562192095465 -2.098039868451009 0.9016800191839003 QNRDEVLDNLLAFVCDIRPEIHENYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QNRDEVLDNLLAFVCDIRPEIHENYR 26 2 O75348 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 0 ; 128.92 5.0256e-05 391690000.0 161558.0 204501.0 182859.0 211024.0 184354.0 173782.0 184144.0 165440.0 232150.0 181554.0 False True 160688.18967878126 211307.69216153497 208603.95776107942 237739.61676322191 207830.38914823363 161768.8593788258 175236.25122160767 177785.9728872979 174939.7431506254 169967.06828380062 0.9454077857627923 1.24322725746323 1.227319855942713 1.3987392920507333 1.2227685706810636 0.9517658980192212 1.0310011991794135 1.0460024679042046 1.0292566961178722 1.0 17.374895720646805 2.7505873810937085 24.147827761299478 1.0186437105173332 1.221204171393644 0.45399849974402495 0.10674329597151175 439.17902422144255 881800.7317945075 0.03332961624245278 0.035078577484376185 563.1024035543082 -2.7505873810937085 0.20256046087631074 QNS(ph)SSSDSGGSIVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QNSSSSDSGGSIVR 14 0 A0A2R8Y4W2;A0A2R8YE63;Q12929-2;Q12929 A0A2R8Y4W2 EPS8 Epidermal growth factor receptor kinase substrate 8 1 QNS(0.332)S(0.332)S(0.332)S(0.004)DSGGSIVR 213.55 9.189e-10 168340000.0 240000.0 239870.0 215840.0 234510.0 224100.0 236550.0 238380.0 211150.0 244060.0 239220.0 True False 238707.8666665066 247853.92794552317 246228.39588508807 264198.94195514807 252637.80665523442 220197.85527880443 226848.6486999675 226907.08519797455 183914.68323644917 223952.77479345413 1.065884836152 1.1067240768689401 1.0994657070544367 1.1797082764382443 1.1280851817452844 0.9832334316102457 1.012930734656823 1.0131916668915806 0.821220828391472 1.0 17.772835015852372 2.720782864570366 7.114198202918546 0.9743291411251668 1.1181865235645527 0.6194594344687216 0.058542823202354384 0.12450091213154699 32.47255484345128 0.019010640169899395 0.018442518452766187 525.7543377974233 -2.720782864570366 0.14385738243938595 QNVAYEYLCHLEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 QNVAYEYLCHLEEAK 15 0 P46940;A0A0J9YXZ5;A0A087X225 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 146.78 3.8248e-06 60633000.0 113870.0 76719.0 74138.0 76732.0 71908.0 102900.0 87610.0 84016.0 117480.0 96293.0 False True 113256.93657214634 79272.54553738519 84575.98598095201 86446.26333249071 81065.05756789198 95786.76520054539 83371.96959729903 90285.70054460358 88528.6281513481 90147.49829941508 1.2563514097304818 0.8793648967838251 0.9381955969542505 0.9589424550126602 0.899249109483252 1.062555999972402 0.9248395259998023 1.0015330680029464 0.9820419847626821 1.0 16.45999983525469 4.748559262435965 24.846378128458717 0.9614765599769135 1.2563515849969262 0.7498508294955698 0.051218996370632076 612.5587957725498 1522159.1459784224 0.011725903405020366 0.1598581472158388 56047.88933033944 -4.748559262435965 0.2948750250200127 QNVAYEYLCHLEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QNVAYEYLCHLEEAKR 16 1 P46940;A0A0J9YXZ5;A0A087X225 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 178.12 1.8429e-09 340770000.0 552920.0 522560.0 495380.0 540440.0 502240.0 589730.0 566980.0 527980.0 775870.0 620430.0 False True 549943.1401551876 539953.0937058099 565125.1980798508 608859.6485874378 566197.2869902945 548963.3531750975 539553.0113260653 567380.5486281158 584667.2346253535 580833.6262231538 0.9468169805029535 0.9296174830937943 0.9729553740794133 1.048251377156867 0.9748011503259005 0.9451301171123797 0.928928675900681 0.976838328589004 1.0066001833039997 1.0 19.147765452186963 3.2460739852761193 0.004639744858896867 1.9357263766995214 5.001232367836257e-05 0.1063479888342036 0.03385465737129612 48140.006361168955 63.463921373232495 12999.311318176096 13477.267818846554 1762.2762376281692 -3.2460739852761193 -1.935676364375843 QPAQELS(ph)PTPGGTAHQALK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPAQELSPTPGGTAHQALK 19 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 QPAQELS(0.987)PT(0.013)PGGTAHQALK 143.47 9.3309e-08 293800000.0 284010.0 194080.0 181680.0 200220.0 158010.0 228900.0 248420.0 242800.0 366640.0 277730.0 True False 282480.9217164773 200539.83547616232 207258.96480913108 225567.83147098072 178131.63690135462 213076.6817726417 236402.97554344306 260918.9689134182 276286.484724296 260005.0336233842 1.0864440498703933 0.7712921272387485 0.7971344320562059 0.8675517867000776 0.6851084166292614 0.8195098333414654 0.909224610958384 1.0035150676788736 1.062619753448679 1.0 17.98818002812592 1.8670632014523059 2.358368220392375 1.0302284524765093 0.8281859966528674 0.4128748477027111 0.09778610499056876 0.27036646302684303 2.7684348472086198 0.05665458717921599 0.02759206096407384 73.63142430963848 -1.8670632014523059 -0.2020424558236419 QPASAQSTPSTTPHS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPASAQSTPSTTPHSSPK 18 0 A0A087WT18;Q96A73-2;Q96A73 A0A087WT18 KIAA1191 Putative monooxygenase p33MONOX 1 QPASAQSTPSTTPHS(0.662)S(0.337)PK 161.91 3.873e-11 54581000.0 18826.0 20315.0 24433.0 21628.0 21752.0 27561.0 31015.0 25551.0 27117.0 25728.0 True False 18724.642907765225 20991.172494323175 27872.954024556915 24366.10258243119 24521.988265795015 25655.772941615454 29514.68596119428 27457.74536534903 20434.378699183766 24086.017013151006 0.7774071942879364 0.8715086634233448 1.157225539172302 1.0116285548219641 1.0181005955615645 1.065172914542382 1.225386743897059 1.1399869621597067 0.8483917738672426 1.0 14.555908221425451 4.384531327402529 4.923660571595891 1.0721403944854835 0.7984302914106309 0.47597373630232553 0.09913691513995329 0.15106165223452792 5.98864232841198 0.024762417933471264 0.07313471214554862 24239.928105701823 -4.384531327402529 -0.27371010307485255 QPASAQSTPSTTPHSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 QPASAQSTPSTTPHSSPK 18 0 A0A087WT18;Q96A73-2;Q96A73 A0A087WT18 KIAA1191 Putative monooxygenase p33MONOX 1 QPASAQSTPSTTPHS(0.016)S(0.984)PK;QPASAQSTPSTTPHS(0.029)S(0.971)PK;QPASAQSTPSTTPHS(0.25)S(0.75)PK;QPASAQSTPSTTPHS(0.291)S(0.709)PK 227.01 2.0629999999999999e-19 2169610000.0 745703.0 866290.0 948940.0 743710.0 1013220.0 1173310.0 1254000.0 1011350.0 1123690.0 1012030.0 True False 741688.2179033912 895123.9389666365 1082542.5036656589 837863.6097456962 1142247.5611745499 1092201.841374653 1193339.2292547987 1086822.0725312424 846771.6561745682 947441.3789575252 0.7828328320634198 0.9447802880971339 1.1425957612879292 0.8843434837811306 1.205612913414623 1.1527909437272081 1.2595388546021034 1.147112736122079 0.8937456976032391 1.0 19.853677156608576 5.4506869219701555 0.8022705024733016 1.1157407416916405 0.0008042109539744447 0.3641749647828808 0.12165015988863387 6.7844350025040825 1.4723830080840845 0.041210260583893536 8.80584815187309 282284.42844092427 -5.4506869219701555 -1.114936530737666 QPDISCILGTGGKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPDISCILGTGGKSPR 16 1 P57740;P57740-2;G3V1T4 P57740 NUP107 Nuclear pore complex protein Nup107 1 QPDISCILGT(0.001)GGKS(0.999)PR;QPDISCILGTGGKS(1)PR 176.57 1.8915e-09 1815010000.0 1791740.0 1714840.0 1608490.0 1622290.0 1593880.0 2030340.0 1650230.0 1611780.0 2274880.0 1748900.0 True False 1782093.4709210282 1771917.4127573285 1834951.4107542897 1827671.747662859 1796851.1703330902 1889987.374706272 1570402.07040921 1732059.2080530014 1714266.305830261 1637283.7046913786 1.0884451276310392 1.0822299200072523 1.1207290498870326 1.116282866815295 1.0974586537351445 1.1543432389211539 0.9591508581618874 1.0578858160562268 1.047018486117159 1.0 20.64287289962009 2.2459099771196755 24.999999843477113 1.0226039583200626 1.1088712275856374 0.6794501599262017 0.031462056732358586 102.78109851908934 349626.40149865905 0.010862816775262055 0.008919986788397732 176.16108524547735 -2.2459099771196755 0.08626726926557482 QPDKEFSFMDEEEEDEIRV ddPTM_BT-474_Trastuzumab_2h_R1 3 QPDKEFSFMDEEEEDEIRV 19 2 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 0 ;; 153.21 1.908e-07 237931000.0 191462.0 170885.0 164452.0 164355.0 175859.0 215209.0 224307.0 181711.0 263477.0 227449.0 False True 190431.18986542794 176572.8039228361 187605.4121575915 185162.32614830197 198253.6012520434 200332.10837749435 213456.41347404808 195271.19752976164 198546.62376091903 212933.01009111432 0.894324415852395 0.8292411019187694 0.8810536801096029 0.8695801842517079 0.9310609058088758 0.9408222252236605 1.0024580659556253 0.9170546053249556 0.9324370311393272 1.0 17.70004009638825 3.1481040166622525 2.2325847700440558 0.9541385902579731 0.8641922649642803 0.6685670839237057 0.02984425278848055 0.1827991855254903 1.8641825402937624 0.009263925010136584 0.011898624751568764 1406.3843229891459 -3.1481040166622525 -0.08994632529369284 QPDPDENKPMEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPDPDENKPMEDK 13 1 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0Y7F0;E7EQ12;E7EQA0;A0A0C4DGD1;P20810-5;E9PCH5;P20810-2;P20810-3;A0A0C4DGB5;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 0 83.729 0.0091835 169160000.0 291950.0 194370.0 161080.0 142730.0 135390.0 245650.0 249770.0 221180.0 369560.0 203270.0 False True 290378.17363869405 200839.487950854 183758.663867541 160799.60336556326 152631.11398059878 228668.79369790066 237687.6708859421 237685.57472928267 278486.8898502911 190297.13457179756 1.5259198426297729 1.0553994331169443 0.9656407295939097 0.8449922471370418 0.8020673265734976 1.2016407614988327 1.249034418835479 1.2490234036582712 1.46343186132012 1.0 17.537894312611115 2.49988839003964 23.04234348671023 1.2551388253197167 1.0225899060537196 0.17231171658052424 0.2112790350539823 447.92244392895464 453336.89378159854 0.07006101720640098 0.06551435358877751 316.1465086324147 -2.49988839003964 -0.23254891926599708 QPEDDSSQAFIST(ph)QNGSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPEDDSSQAFISTQNGSPR 19 0 Q5TCQ9;Q5TCQ9-1;Q5TCQ9-3;Q5TCQ9-2 Q5TCQ9 MAGI3 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 1 QPEDDSSQAFIS(0.115)T(0.442)QNGS(0.442)PR 150.65 1.4019e-09 0.0 32923.0 36052.0 30878.0 35491.0 35233.0 40583.0 36929.0 31697.0 34918.0 35545.0 True False 32745.746226089163 37251.96902610579 35225.35400361269 39984.15696102581 39719.713707647854 37777.59273210622 35142.603187520355 34062.39109410468 26312.926777228236 33276.48766839446 0.9840505570301102 1.119468178172157 1.0585658665253073 1.2015738367424575 1.1936269868220821 1.1352638267766115 1.0560791011876625 1.0236173791399463 0.7907363012419091 1.0 15.022215544675015 1.5565586579496724 2.632437382303419 0.897047035988541 1.1152569696421764 0.5245724609990114 0.07866965796189551 0.17917608400259782 2.7305445155592074 0.05661637622535641 0.020874421669781207 36.02123991683394 -1.5565586579496724 0.2182099336536354 QPEDDSSQAFISTQNGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPEDDSSQAFISTQNGSPR 19 0 Q5TCQ9;Q5TCQ9-1;Q5TCQ9-3;Q5TCQ9-2 Q5TCQ9 MAGI3 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 1 QPEDDSSQAFISTQNGS(1)PR;QPEDDSSQAFISTQNGS(1)PR 325.9 4.7755e-58 540300000.0 253473.0 299700.0 270880.0 282640.0 293110.0 318190.0 320070.0 247760.0 302870.0 283070.0 True False 252108.3295314976 309675.33332752454 309017.54946883244 318422.19502026774 330435.8211009182 296194.2742386929 304586.9913138624 266249.10929978796 228231.74675007505 265004.2302515803 0.951337000515652 1.1685675094074384 1.1660853457903986 1.2015740077732924 1.2469077221417213 1.1176964003838825 1.1493665252992542 1.0046975817971882 0.8612381264004899 1.0 18.015655863977802 1.6105236351345835 3.238933082312536 0.929713528435405 1.150847384604021 0.546829429181803 0.07969495313381891 0.14294006333301004 3.5293006630259423 0.05033035311831339 0.021018657612721137 40.78717583268121 -1.6105236351345835 0.22113385616861603 QPEKEEEEEAGESVEDIFSEVVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 QPEKEEEEEAGESVEDIFSEVVGR 24 1 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 0 ;; 163.74 1.4945e-11 192447000.0 160126.0 165006.0 143238.0 136449.0 151027.0 183284.0 177067.0 171732.0 237252.0 191536.0 False True 159263.89940767127 170498.12496176673 163404.66535298518 153723.42940956875 170259.39324283868 170614.00848412758 168501.59274837287 184547.5138774266 178784.4236139227 179312.0084977805 0.8881942751181809 0.950846105568424 0.911286794018638 0.8572957868099029 0.9495147294886618 0.9514923730623396 0.9397117023005102 1.0291977398697807 0.9970577269850595 1.0 17.452112582944665 2.1709717928117733 1.186944281410211 1.012490834401206 0.9097101149342701 0.6588036204981542 0.02917324470407621 0.28450772284014564 0.7611778299070792 0.020116605894550336 0.010745054642118071 148.24217995369216 -2.1709717928117733 -0.1027807194669359 QPEYLDATGGTLHPYQMEGLNWLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPEYLDATGGTLHPYQMEGLNWLR 24 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 165.9 5.3533000000000004e-15 0.0 26318.0 40097.0 25279.0 38469.0 34150.0 39788.0 29528.0 27196.0 35667.0 36713.0 False True 26176.306812204693 41431.604405851656 28838.063470993093 43339.171455684555 38498.80007709175 37037.54921087751 28099.61783208592 29225.50361848978 26877.345763314057 34369.94490841933 0.7616045612512021 1.2054603088904714 0.8390488709782267 1.2609613303473204 1.120129816316959 1.0776144480174803 0.8175636564725066 0.8503215148107683 0.7820014211524129 1.0 15.068859918765801 2.2401013799475504 24.995943200773958 0.8488746516185343 1.0554572146963601 0.2517890506489364 0.1519479209671592 48.82591577798084 792123.3734591779 0.05124897730135594 0.040769433736847556 173.82065412992054 -2.2401013799475504 0.20658256307782585 QPEYSPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 QPEYSPESPR 10 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYSPES(1)PR 221.52 5.5951e-09 7908030000.0 2274360.0 2999070.0 2722540.0 2933590.0 3164340.0 2706380.0 2657840.0 2881730.0 3234150.0 2574680.0 True False 2262115.098465151 3098892.2319739037 3105849.967258102 3304982.193212241 3567299.942487394 2519294.320733251 2529270.1252652146 3096779.3257284346 2437137.067889703 2410361.7181055504 0.9384961109667327 1.28565443464208 1.2885410284806456 1.3711561083909958 1.4799853132795153 1.0451934669429273 1.0493321837409206 1.2847778416271818 1.0111084363741045 1.0 21.20081823435149 2.7005335260963723 24.99888558305411 1.1087321379391146 1.2798251903719002 0.2853420787712341 0.14997720777010898 850.8310332367336 559332.9438712985 0.04994263769397011 0.047087426177615584 501.8033150963643 -2.7005335260963723 0.1710930524327856 QPGQVIGATTPS(ph)TGSPTNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGQVIGATTPSTGSPTNK 19 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 QPGQVIGATT(0.005)PS(0.327)T(0.327)GS(0.301)PT(0.04)NK 83.617 0.0034909 140790000.0 109000.0 82258.0 80031.0 79163.0 92419.0 117680.0 107180.0 99691.0 144320.0 123840.0 True False 108413.15611103851 84995.90780398896 91298.66915807783 89185.0276832347 104188.01183967029 109545.05858892284 101995.29393263898 107130.44864064062 108754.2697889221 115936.4251752419 0.9351086679373484 0.7331251388466974 0.7874890830908124 0.7692580442119762 0.8986650371717648 0.944871798689167 0.8797519310990448 0.9240447812558414 0.9380509156163499 1.0 16.822974381278296 3.124611916282206 4.981382195955982 0.9266356310643968 0.8001129290679763 0.5404142121798923 0.05659259728770288 0.15810910374939519 6.253551844126814 0.015776580934912413 0.019085231079455915 1332.3303352932635 -3.124611916282206 -0.12652270199642057 QPGQVIGATTPSTGS(ph)PTNK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGQVIGATTPSTGSPTNK 19 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 QPGQVIGATTPS(0.004)T(0.028)GS(0.967)PTNK 178.84 3.8911e-14 191850000.0 140590.0 105910.0 87854.0 88967.0 107590.0 146420.0 150230.0 119880.0 174670.0 145720.0 True False 139833.0790610174 109435.15032605299 100223.07955934273 100230.21307800803 121290.94876410833 136298.3300356059 142962.80096566875 128826.05433830536 131624.91895808617 136420.02484283134 1.025018718638398 0.8021927165907831 0.7346654545387242 0.7347177453858599 0.8890993012488223 0.999107940294208 1.0479605258126532 0.9443339017620401 0.9648504250730816 1.0 17.057695904876667 2.9296561023834395 4.011436069703818 0.9879170484261269 0.8153754079944115 0.49212576490185134 0.07994409592442196 0.1961660004151601 6.085852135508022 0.025755351722910422 0.02816370869404481 850.4643283211922 -2.9296561023834395 -0.17254164043171538 QPGS(ph)PSPPSIPETGQGVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGSPSPPSIPETGQGVTK 19 0 F8VSJ1;F8VRY0;H0YI55;Q96PM9-1;Q96PM9;F8VQ24 F8VSJ1 ZNF385A Zinc finger protein 385A 1 QPGS(1)PSPPSIPETGQGVTK 231.21 4.0966e-20 165590000.0 110590.0 98337.0 107770.0 92111.0 112210.0 117630.0 109990.0 122120.0 119150.0 118330.0 True False 109994.59572770407 101610.08759902824 122943.07924636753 103772.24315564633 126499.278379223 109498.51497123552 104669.36349739674 131233.21451279506 89787.07902820155 110778.07809259028 0.992927460212558 0.9172400293323443 1.1098141560427643 0.9367579302911506 1.1419161675064688 0.9884493110605758 0.9448562865471654 1.1846496777377562 0.8105130597513699 1.0 16.757312888710178 4.264626144576538 24.995943041008847 1.0265634417555547 0.9550837660601283 0.0389841779267468 0.10567387270728648 617.2381169346656 591899.558572615 0.02393386200025336 0.06549816720387214 18391.88084324522 -4.264626144576538 -0.07147967569542635 QPGTCS(ph)PDLAAPLDENGAVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGTCSPDLAAPLDENGAVDR 21 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 QPGT(0.062)CS(0.938)PDLAAPLDENGAVDR 145.02 1.2814e-07 400460000.0 217300.0 248900.0 200820.0 211890.0 226250.0 244390.0 221540.0 204630.0 247080.0 220410.0 True False 216130.0809442994 257184.4860367724 229093.71044126875 238715.25227442905 255061.59641118612 227495.89453217943 210823.26383501457 219900.52969008565 186190.44470237585 206343.24509750548 1.0474298823892647 1.2463915933630025 1.1102554403126341 1.1568842593399482 1.2361034464232608 1.1025119548966988 1.0217114872618782 1.0657025849630979 0.9023336073560023 1.0 17.654686685140177 2.042226416970799 1.3050311774681405 0.9765375661616287 1.1614309572913362 0.5754516673640577 0.0655530008665348 0.3137054488436146 0.9966907285379807 0.044077779649423686 0.02133020816573447 110.21137405528417 -2.042226416970799 0.18489339112970749 QPGTCS(ph)PDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGTCSPDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDK 42 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 QPGT(0.215)CS(0.785)PDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDK 81.181 0.00035394 98189000.0 15974.0 18315.0 17250.0 17073.0 15291.0 19322.0 19180.0 17110.0 21986.0 24444.0 True False 15887.997758878251 18924.603703348697 19678.650060312135 19234.440049465877 17238.218213142303 17986.31561909559 18252.19012528473 18386.83508281954 16567.844897306266 22883.962992438726 0.694285240896777 0.8269810482389667 0.8599319124407916 0.8405205014455442 0.7532881528797316 0.7859790555088116 0.7975974323728623 0.8034812453111763 0.7239936938711438 1.0 14.482049295933567 -2.289143307602435 2.4803536294806645 2.081965294826822 0.7924992992522741 0.6266413890016147 0.049099721339999416 4666799.515864983 1056642.0849592246 28291659.612177603 0.011843495014093973 0.005138740564953981 2.289143307602435 -1.2894659955745478 QPGTCSPDLAAPLDENGAVDRGEGGS(ph)EDGS(ph)EDGLPEGIHLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGTCSPDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDK 42 1 O75362 O75362 ZNF217 Zinc finger protein 217 2 QPGT(0.001)CS(0.002)PDLAAPLDENGAVDRGEGGS(0.997)EDGS(1)EDGLPEGIHLDK 75.553 0.0018366 45405000.0 36621.0 32123.0 25645.0 27283.0 30174.0 36582.0 30518.0 35918.0 47620.0 30228.0 True False 36423.8366049756 33192.19463623645 29255.59308966407 30737.025002610997 34016.48004469008 34053.17244476528 29041.72774991866 38598.383547908394 35884.68907530811 28298.823160507196 1.2871148880780094 1.1729178435433407 1.0338095306553987 1.0861591250022886 1.2020457476889794 1.203342352846978 1.0262521372425208 1.363957198113273 1.268062946355574 1.0 14.78845443770192 1.7389892180100288 24.999999999998185 1.2455121063194088 1.1435832545230773 0.04018745060540119 0.11505617826440886 0.135562537096938 7132.980928669918 0.05147736342776127 0.02854688120911856 54.82633533195022 -1.7389892180100288 -0.10192885179633149 QPGTCSPDLAAPLDENGAVDRGEGGS(ph)EDGSEDGLPEGIHLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPGTCSPDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDK 42 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 QPGTCSPDLAAPLDENGAVDRGEGGS(0.933)EDGS(0.067)EDGLPEGIHLDK 77.804 0.0006429 73741000.0 25213.0 23063.0 19714.0 22956.0 25468.0 28002.0 25213.0 23071.0 30833.0 29046.0 True False 25077.25600942763 23830.638013122098 22489.559842840205 25862.22724626828 28711.198839337427 26066.287649617785 23993.350866986642 24792.67517216423 23234.62029103266 27192.259412468302 0.9222203873919027 0.8763757969370938 0.8270574173960772 0.9510878391521166 1.0558592577332009 0.9585921954563941 0.8823595900230753 0.9117548783311545 0.8544571430639939 1.0 14.730908409828535 3.7147484362512104 24.16328425279848 0.9407581111672685 0.875333650827728 0.23159452195744368 0.05780321372100815 824.5823984428307 836740.3762706398 0.016640806865498858 0.025798240845032853 5184.996126139405 -3.7147484362512104 -0.06542446033954052 QPGVDSLS(ph)PVASLPK ddPTM_BT-474_Trastuzumab_2h_R1 6 QPGVDSLSPVASLPK 15 0 Q9UBW7;Q9UBW7-2;A0A087X151 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 QPGVDSLS(1)PVASLPK;QPGVDSLS(1)PVASLPK;QPGVDSLS(1)PVASLPK;QPGVDSLS(1)PVASLPK;QPGVDS(0.057)LS(0.943)PVASLPK;QPGVDS(0.002)LS(0.998)PVASLPK 252.33 1.2734e-24 1199389000.0 1125534.0 1114311.0 1011576.0 989727.0 962928.0 1184643.0 1121617.0 1109980.0 1438216.0 1151549.0 True False 1119474.2500025842 1151400.1680197746 1153997.1080237876 1115026.3367210042 1085551.1730785877 1102751.417759667 1067360.1007169704 1192812.3439642335 1083786.9379070424 1078056.156929299 1.0384192352198602 1.0680335719239213 1.0704424816892624 1.0342933710401598 1.0069523429750054 1.0229072119032363 0.9900783867857172 1.1064473184419283 1.0053158464342589 1.0 20.04000090067363 1.5567905778961038 0.004894432089914172 1.4761425663868994e-07 2.0652607035275805 0.13279787196489667 0.03294558618403642 10080.971745143659 50.451470454273995 10642.243795132441 10642.253145375238 36.040480951135194 -1.5567905778961038 2.0652605559133237 QPGYQPPNPHPGPS(ph)SPPAAPASK ddPTM_BT-474_Trastuzumab_2h_R1 4 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 QPGYQPPNPHPGPS(0.641)S(0.359)PPAAPASK;QPGYQPPNPHPGPS(0.709)S(0.291)PPAAPASK;QPGYQPPNPHPGPS(0.851)S(0.149)PPAAPASK;QPGYQPPNPHPGPS(0.501)S(0.499)PPAAPASK 180.65 2.8895e-17 6035900000.0 3525270.0 3261840.0 3076870.0 2998310.0 3186170.0 3666120.0 3444080.0 3355570.0 4022700.0 3977930.0 True False 3506290.3380143195 3370408.372576083 3510066.5513665313 3377895.738576349 3591909.8635908477 3412689.7535182075 3277476.6927367426 3605979.6726392037 3031359.4864183543 3724055.101722789 0.9415248277052267 0.905037192123418 0.9425388334728817 0.9070477332662712 0.9645157672154718 0.916390778412344 0.8800827601129064 0.968293855526208 0.8139942626026166 1.0 21.828442988728426 2.521634856144958 24.98480121011021 0.9152725773980255 0.9308761662291906 0.026771874463309087 0.04909388324131491 2207.179744848405 1238854.6558876177 0.014797359174256314 0.013950334215490318 332.3799790714242 -2.521634856144958 0.015603588831165083 QPHVGDYR ddPTM_BT-474_Trastuzumab_2h_R1 7 QPHVGDYR 8 0 Q06323;Q06323-3;Q06323-2;H0YKK6 Q06323 PSME1 Proteasome activator complex subunit 1 0 ;;;;;; 91.584 0.012384 7860090000.0 5849380.0 6680090.0 6488300.0 6811150.0 6669570.0 6782350.0 6738790.0 5953430.0 7200000.0 6715350.0 False True 5817887.58800722 6902432.757450327 7401796.242685407 7673440.8916370515 7518900.205861462 6313502.108434586 6412808.983022283 6397705.17750499 5425656.475057089 6286770.61369962 0.9254175069358109 1.0979297928270368 1.1773606351337227 1.220569567929791 1.1959876807779317 1.0042520232369725 1.0200481896139189 1.017645715204501 0.8630275873647973 1.0 22.58388769358014 2.62634773214546 5.999466157245529 0.9863185101234018 1.130072160234683 0.40182864153615994 0.08677816768971416 0.26119600190826503 12.178179353642953 0.029906216094461435 0.028120905322625116 423.00717329929614 -2.62634773214546 0.14375365011128127 QPIDIFLSHDWPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPIDIFLSHDWPR 13 0 Q9UK59 Q9UK59 DBR1 Lariat debranching enzyme 0 ; 167.55 3.1723e-05 785640000.0 895940.0 1051540.0 917480.0 1016840.0 1015530.0 1044220.0 1027390.0 866510.0 1109450.0 977130.0 False True 891116.3585882927 1086539.8732306457 1046653.2091208798 1145571.8397410454 1144851.7259821077 972035.5292294802 977691.2206890669 931173.376248625 836040.9133683459 914768.7268369189 0.9741438818854126 1.1877754905195284 1.144172486897306 1.2523076118946435 1.2515204033491265 1.0626024925344553 1.0687851388074021 1.0179331113214047 0.9139369207113175 1.0 19.803047519669892 2.032554931836246 1.4329129674206897 0.9687058624794548 1.1629327276472434 0.48692230744220644 0.07968933625274384 0.3549521131883736 1.3628189516281295 0.054613492785128066 0.026631534911550007 107.78415761094708 -2.032554931836246 0.19422686516778864 QPLLLS(ph)EDEEDTKR ddPTM_BT-474_Trastuzumab_2h_R1 10 QPLLLSEDEEDTKR 14 1 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.992)EDEEDT(0.008)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.995)EDEEDT(0.005)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR 261.63 9.9226e-25 100165760000.0 10838640.0 9398000.0 8586630.0 8212580.0 8769130.0 11100960.0 10777990.0 10345980.0 14303560.0 10898100.0 True False 10780285.966526099 9710806.748789025 9795552.867674103 9252291.78594521 9885826.726794375 10333576.764049042 10256617.447779864 11118049.563421933 10778639.295884375 10202573.92766717 1.0566241463139314 0.9517996946295504 0.9601060415853185 0.9068585879936629 0.9689541871376354 1.012840175166643 1.0052970476367868 1.0897298703489118 1.0564627487437301 1.0 23.28242982858774 2.303026382783445 1.8053269562426404 1.0549052159923358 0.9651192146643452 0.37166214813352705 0.042083013336425605 0.3164095735865188 2.0897698354466288 0.020590861364619233 0.01389861723553377 200.92148658993895 -2.303026382783445 -0.08978600132799053 QPNQPLRPADKEPEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPNQPLRPADKEPEPR 16 2 P78332;E9PGM9;F8WCA5;P78332-2;C9JSL1;F8WF63 P78332 RBM6 RNA-binding protein 6 0 ; 85.619 0.003986099999999999 176331000.0 273310.0 272390.0 253290.0 240630.0 245120.0 294520.0 288560.0 275760.0 328020.0 320580.0 False True 271838.5293275955 281456.336486768 288951.0303638533 271093.73332765047 276334.57905993337 274160.5256255063 274601.25039375224 296338.6114809068 247183.8662428093 300120.30993765366 0.9057651892471611 0.9378116947341455 0.962783992938963 0.9032835311411177 0.9207460138813615 0.9135020741597255 0.9149705678059485 0.9873993917388247 0.823615923541325 1.0 18.195181427677817 -2.3478340707708036 2.4174872295371848 1.5221605297844876 0.9246865776234291 0.2503839818673449 0.04101583627210866 11119514.410407573 4850034.299349218 30346024.612493515 0.009943203898826001 0.004489168731222839 2.3478340707708036 -0.5974739521610585 QPPGPVPT(ph)PPLPSER ddPTM_BT-474_Trastuzumab_2h_R1 2 QPPGPVPTPPLPSER 15 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 QPPGPVPT(1)PPLPSER;QPPGPVPT(0.998)PPLPS(0.002)ER 130.21 0.00068301 528840000.0 271210.0 307140.0 277050.0 296790.0 291920.0 251850.0 250520.0 230260.0 287540.0 244988.0 True False 269749.83549426397 317362.9692299496 316056.23183823103 334363.5835694361 329094.28165460104 234440.2022911303 238401.39052066382 247443.17043658838 216679.61983859955 229352.65609522068 1.1761356510398184 1.3837335683533114 1.3780360655906836 1.4578579086985497 1.4348832372709497 1.022182198726303 1.0394533666167196 1.0788764108921287 0.9447443231206373 1.0 17.807208089566362 2.732881334256249 24.975163186328203 1.0284522048629496 1.3728648275443627 0.8340553484230485 0.07774113100492629 183.4275317728346 806637.2962822902 0.025420677631201778 0.024582539945966066 540.6065885149461 -2.732881334256249 0.34441262268141304 QPPGTQQSHS(ph)SPGEITSSPQGLDNPALLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0;Q5TDH0-3;Q5TDH0-2 Q5TDH0 DDI2 Protein DDI1 homolog 2 1 QPPGTQQS(0.005)HS(0.686)S(0.308)PGEITSSPQGLDNPALLR 188.67 3.2268999999999998e-18 743680000.0 156080.0 177990.0 155560.0 178240.0 168180.0 176800.0 182750.0 180220.0 169800.0 199420.0 True False 155239.68262211818 183914.2895527731 177461.49584824115 200805.1657246412 189596.72611904217 164578.2321424336 173909.68432720462 193668.93153861706 127955.06520342953 186692.84486794856 0.8315245435995268 0.9851169694417544 0.950553278963439 1.0755911179492421 1.015554325358037 0.8815454725050816 0.9315283853016129 1.0373666525656235 0.6853774460072887 1.0 17.510307110777912 2.7398502556290345 24.990456176798318 0.9221201720120205 0.977015669453446 0.07655076243449 0.10500707804013074 374.7026080651716 7261010.220352768 0.032682904630241795 0.0329344436550042 549.3514252906713 -2.7398502556290345 0.05489549744142552 QPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_BT-474_Trastuzumab_2h_R1 3 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0;Q5TDH0-3;Q5TDH0-2 Q5TDH0 DDI2 Protein DDI1 homolog 2 1 QPPGTQQS(0.016)HS(0.189)S(0.795)PGEITSSPQGLDNPALLR;QPPGTQQS(0.005)HS(0.186)S(0.808)PGEITSSPQGLDNPALLR;QPPGTQQS(0.001)HS(0.186)S(0.813)PGEITSSPQGLDNPALLR 246.03 6.749e-46 2394000000.0 213809.0 234875.0 236053.0 204185.0 256784.0 242447.0 215311.0 220463.0 229798.0 260240.0 True False 212657.87610041283 242692.6723900644 269287.2105905429 230034.80006444023 289483.920321989 225687.20954884947 204895.58436210535 236915.06854843057 173167.36203543996 243631.2603973265 0.8728677746591277 0.9961475058425122 1.1053064789443494 0.9441924640101091 1.188205158278472 0.9263475022900881 0.8410069546410055 0.9724329634959701 0.7107764486093847 1.0 17.894339732175016 2.493052789479037 24.765253732322293 0.8869743234109633 1.0240178669429798 0.2759746892975854 0.10807274414324392 821.5842224683024 1277137.3378139928 0.03390393916342492 0.031105908225178107 311.2094596271265 -2.493052789479037 0.13704354353201653 QPPGVPNGPS(ph)SPTNESAPELPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPPGVPNGPSSPTNESAPELPQR 23 0 Q8TF74;Q8TF74-2 Q8TF74 WIPF2 WAS/WASL-interacting protein family member 2 1 QPPGVPNGPS(0.537)S(0.358)PT(0.097)NES(0.007)APELPQR 103.25 0.0011282 215600000.0 172030.0 203820.0 207960.0 206730.0 218700.0 209910.0 194190.0 162280.0 180620.0 206580.0 True False 171103.80959433003 210604.02548820822 237238.96037927642 232901.99680349528 246550.14866354215 195399.41577498973 184796.28782216058 174390.15764114296 136108.62118400144 193395.88753796395 0.8847334437798842 1.088978820435705 1.2267011641222516 1.204275849752887 1.2748469049795277 1.0103597251344472 0.9555336991635086 0.9017262976024237 0.7037823963929072 1.0 17.561197591424957 2.246422304038297 2.0179214532928373 0.8666670236839858 1.1407334150694552 0.47187967548768517 0.12226526937299367 0.2855575865875101 2.353346751733713 0.06032994911429248 0.0399301604169579 176.36902093151477 -2.246422304038297 0.2740663913854694 QPPGVPNGPSS(ph)PTNESAPELPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 QPPGVPNGPSSPTNESAPELPQR 23 0 Q8TF74;Q8TF74-2 Q8TF74 WIPF2 WAS/WASL-interacting protein family member 2 1 QPPGVPNGPS(0.261)S(0.625)PT(0.11)NES(0.003)APELPQR;QPPGVPNGPS(0.201)S(0.744)PT(0.055)NESAPELPQR;QPPGVPNGPS(0.194)S(0.68)PT(0.126)NES(0.001)APELPQR 104.83 0.0010297 686180000.0 631860.0 701600.0 691870.0 748320.0 736240.0 741080.0 705110.0 585870.0 595060.0 687930.0 True False 628458.1359662451 724952.3318738446 789279.2821581541 843057.2352730217 829995.799963632 689850.8839146753 671001.1355182235 629590.5943875789 448415.4363954822 644025.718433495 0.9758277006310928 1.1256574250438205 1.2255400049519274 1.3090428086065318 1.288761886687513 1.0711542476791824 1.0418856208884677 0.9775861062178889 0.6962694556456407 1.0 19.29675877631025 1.908291499404948 1.5041642109221072 0.8622670727138444 1.1838480410339307 0.5367000111819228 0.11691733598136449 0.30714502880008615 1.2965029615921875 0.08568007786073241 0.03814116474358494 80.96391484079801 -1.908291499404948 0.3215809683200863 QPPLLGDHPAEYGEGR ddPTM_BT-474_Trastuzumab_2h_R1 3 QPPLLGDHPAEYGEGR 16 0 A0A3B3ITJ4 A0A3B3ITJ4 0 ;; 192.16 5.793400000000001e-10 800020000.0 361631.0 420218.0 414592.0 411952.0 411025.0 418260.0 418432.0 368349.0 420764.0 402810.0 False True 359684.0188769814 434204.7021028552 472962.9499017351 464105.0809616096 463366.5974139566 389346.6706781345 398190.8455945332 395837.0728183225 317072.3501487387 377102.320937009 0.9538101435792087 1.1514241042695268 1.2542032324981065 1.230713934107909 1.2287556233082881 1.0324695687650536 1.0559225533407597 1.049680818284974 0.8408125130624755 1.0 18.52459650424285 1.9939145471741535 1.162777102564218 0.9456717197795862 1.1651803915859422 0.43852425727946365 0.0958373787824734 0.46537924567424366 1.162277614171578 0.07526775169271145 0.0348361907309766 98.60854420005106 -1.9939145471741535 0.21950867180635603 QPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR ddPTM_BT-474_Trastuzumab_2h_R1 3 QPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 38 0 P14866;M0QXS5;P14866-2 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;; 181.96 9.4889e-24 2904990000.0 333631.0 408120.0 446100.0 492913.0 457670.0 449580.0 419797.0 39261.0 424463.0 175694.0 False True 331834.7677658891 421704.0274862499 508907.0024292895 555315.7352604921 515951.5616773819 418501.59279748454 399489.8153297262 42190.85518331844 319859.7811627997 164481.0585007989 2.017464933594632 2.5638455353459535 3.094015852450376 3.3761682975659766 3.1368448524112327 2.544375605385904 2.4287891807784407 0.2565088987624281 1.944660279294385 1.0 17.327561928425474 1.901857812833942 5.619799162011095 1.033446945234204 2.809100650683896 0.686946824080773 0.520861650949193 0.12449725121367737 5.682645128126131 0.2358391409348738 0.14187391602939228 79.77334681279204 -1.901857812833942 1.775653705449692 QPPVS(ph)PLTLS(ph)PGPEAHQGFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPPVSPLTLSPGPEAHQGFSR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 2 QPPVS(1)PLT(0.067)LS(0.933)PGPEAHQGFSR;QPPVS(0.999)PLT(0.087)LS(0.913)PGPEAHQGFSR 139.19 2.1236e-07 348840000.0 217386.0 246700.0 233320.0 240630.0 217754.0 242640.0 201039.0 172298.0 203024.0 195113.0 True False 216215.61792985495 254911.2603667005 266169.4279462043 271093.73332765047 245483.68117092332 225866.86791312275 191313.97552643996 185155.75167151605 152991.45558222086 182660.72129535634 1.183700668630567 1.3955450222629824 1.457179332582494 1.4841380862024565 1.3439325073833708 1.2365376984792669 1.0473733716242781 1.0136593699973697 0.8375717258602015 1.0 17.478806909799477 2.2789860504624 1.4944100052369187 0.9428363700481293 1.389154536599611 0.8273516403377051 0.08684081528225615 0.15885903626322917 0.7041779385771151 0.049703852038948164 0.030861089318626408 190.1017218274677 -2.2789860504624 0.4463181665514817 QPQSGEEAVALLEELWGPAAS(ph)PDGSSATR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPQSGEEAVALLEELWGPAASPDGSSATR 29 0 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 QPQSGEEAVALLEELWGPAAS(0.531)PDGS(0.156)S(0.156)AT(0.156)R 74.206 8.0004e-05 0.0 8892.7 11672.0 11654.0 9835.8 12233.0 13530.0 11365.0 9798.2 11669.0 11089.0 True False 8844.822691271851 12060.495464127005 13294.781901616105 11081.01127151271 13790.800039328356 12594.702946194153 10815.23153148389 10529.391438251461 8793.33130658905 10381.290526229457 0.851996451589949 1.1617530049520197 1.2806482843366531 1.0674020964460376 1.328428291693061 1.2132116825333294 1.0418002948822245 1.0142661369169672 0.8470364338972832 1.0 13.341698179705904 1.8008911814076949 2.095316687080384 0.9336364167087674 1.1587825659275341 0.31545185052346825 0.12950388916011052 0.3478729992769308 2.966854814728479 0.08378337913867502 0.03726798100599318 63.2253411540276 -1.8008911814076949 0.22514614921876674 QPS(ph)DSVSDTVALGVPGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPSDSVSDTVALGVPGPR 18 0 F8VW41;Q86VP3-4;Q86VP3;Q86VP3-3;Q86VP3-2 F8VW41 PACS2 Phosphofurin acidic cluster sorting protein 2 1 QPS(0.989)DS(0.011)VSDTVALGVPGPR;QPS(0.988)DS(0.012)VSDTVALGVPGPR 203.17 1.2713e-15 203560000.0 55412.0 56263.0 53343.0 62538.0 55388.0 58060.0 50658.0 48861.0 56793.0 63925.0 True False 55113.667948851995 58135.679943298295 60853.23073433224 70455.3043878344 62441.33348960343 54046.44885853899 48207.479007647264 52507.25593113065 42797.12613721071 59845.25177105402 0.9209363536425024 0.9714334591774144 1.016843090027165 1.1772914692943486 1.0433799113834639 0.903103375106531 0.8055355701747466 0.8773838254036285 0.7151298535920079 1.0 15.868949165262896 2.592731804010529 3.7086951172638662 0.8429820840169613 1.030406473636642 0.4636491756018002 0.09019749391397872 0.21008463265855212 5.191532013917499 0.030956742296964254 0.028682813919505886 391.50003390990935 -2.592731804010529 0.18742438961968078 QPS(ph)EEEIIK ddPTM_BT-474_Trastuzumab_2h_R1 9 QPSEEEIIK 9 0 Q15121-2;Q15121;B1AKZ5 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 1 QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK 141.38 0.00011208 56994530000.0 12260710.0 11090830.0 9462660.0 10115690.0 9566660.0 11272320.0 12175870.0 10684040.0 14214490.0 12380360.0 True False 12194699.699652942 11459981.572001677 10794920.277084824 11396335.316814931 10784917.444963697 10493091.05058709 11586876.65175967 11481337.317255842 10711519.403907523 11590234.82544055 1.0521529445534263 0.988761810662113 0.9313806354803086 0.9832704417515329 0.9305175958377321 0.9053389520249209 0.9997102583570171 0.9906043743008831 0.9241848474368916 1.0 23.466406460760112 4.647132370949066 3.1501232909722323 0.9596273261046983 1.0576400058410997 0.43089761432057316 0.03271938388214186 0.28000435632900306 4.438592408516258 0.008176544491187484 0.05891973678642881 44374.387440176215 -4.647132370949066 0.09801267973640149 QPS(ph)LTLELFPNHTDNLNSSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPSLTLELFPNHTDNLNSSQR 21 0 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 QPS(0.999)LT(0.001)LELFPNHTDNLNSSQR 151.31 4.0675e-08 81162000.0 17950.0 21047.0 24738.0 23433.0 16108.0 18513.0 17812.0 12907.0 25304.0 21016.0 True False 17853.35919443249 21747.53667181982 28220.8953734494 26399.615397360376 18159.258320403915 17233.23988491443 16950.365511552238 13870.185880417996 19068.168256228415 19674.740887297183 0.9074253783926247 1.105353142712081 1.434371895167878 1.3418024434774156 0.9229731880295448 0.8759068281321516 0.8615292881694867 0.7049742591208993 0.969169981218894 1.0 14.264057015380155 3.114347690482069 5.681666246705969 0.8543321169184845 1.206143360432362 0.4958258968946727 0.15098402376287035 0.16789187907724962 7.732017572101551 0.046945690669582284 0.056510419797126045 1301.2108935687106 -3.114347690482069 0.3518112435138774 QPS(ph)MSETMPLYTLCK ddPTM_BT-474_Trastuzumab_2h_R1 5 QPSMSETMPLYTLCK 15 0 A0A0A0MR03;Q9Y5B0;K7EJD2 A0A0A0MR03 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 QPS(0.999)MS(0.001)ETMPLYTLCK;QPS(1)MSETMPLYTLCK;QPS(0.996)MS(0.004)ETMPLYTLCK;QPS(0.989)MS(0.009)ET(0.001)MPLYTLCK;QPS(0.998)MS(0.002)ETMPLYTLCK 273.82 1.9382e-33 747115000.0 590441.0 514967.0 495485.0 474332.0 491264.0 587722.0 524292.0 543655.0 672216.0 542374.0 True False 587262.1312601614 532107.3652908748 565244.981167175 534382.3825656441 553823.5584501437 547094.1614887738 498929.99297006195 584225.2967241532 506557.37403291324 507759.2269702565 1.1565759912710794 1.0479521336636284 1.113214592947783 1.0524326377173785 1.0907208161528605 1.0774676902539506 0.9826113765516826 1.1505951358287694 0.9976330259038038 1.0 18.953785025764308 5.666501049181137 0.01081088091372965 1.555595127336744e-07 2.227648887496398 0.2808194959990524 0.05003985413567338 10002.399846318063 13.063554955774123 1213.9463361495916 1489.4491588145659 463981.9108816556 -5.666501049181137 2.227648731936885 QPS(ph)PEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETK 45 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 QPS(1)PEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETK 61.676 0.0025261 829030000.0 180360.0 149970.0 111090.0 112080.0 102990.0 102310.0 97658.0 84905.0 121170.0 116460.0 True False 179388.96179987965 154961.66079122046 126730.50638841033 126269.31650817874 116105.16603044436 95237.5505118346 92933.90945021159 91241.04223885415 91309.27709481491 109027.42309357779 1.645356339807379 1.421309028447068 1.1623727571698916 1.158142721577509 1.0649170890775963 0.8735192285531008 0.8523902226914672 0.8368632372475899 0.8374890876439823 1.0 16.734331528568706 4.721589853748416 0.5301773367698502 0.846292139757536 2.1918615253430622 0.9307237088219465 0.06801323581234844 0.9314033194998841 0.20308510180839753 0.038863238045892756 0.7813298042430652 52673.21823508451 -4.721589853748416 1.3455693855855262 QPS(ph)SPSHNTNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 QPS(0.468)S(0.468)PS(0.064)HNTNLR;QPS(0.594)S(0.401)PS(0.005)HNTNLR 68.173 0.034385 450490000.0 168456.0 212428.0 189972.0 226510.0 216970.0 216920.0 198665.0 187095.0 207747.0 205128.0 True False 167549.0516132212 219498.53756456226 216718.4063337752 255186.14277540668 244599.8434180555 201924.83097475482 189054.8149760005 201056.9789491595 156550.53551717842 192036.55542108367 0.8724851955703534 1.1430039300760315 1.1285268362503742 1.3288414917454296 1.2737150116117992 1.0514916315385312 0.9844730580667569 1.0469724293288667 0.8152121619444063 1.0 17.551021438012686 2.4899769134495946 4.987331587238361 0.9783061934822403 1.1588715777127574 0.3276231575618037 0.12542427097121803 0.23718155751261472 16.87157507062983 0.0446133906694975 0.039538188923796715 309.0131160647401 -2.4899769134495946 0.18056538423051705 QPS(ph)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 38 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 QPS(0.997)VDLT(0.003)DDDQTSSVPHSAISDIMSSDQETYSCKPHGR;QPS(1)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 190.19 6.0406e-24 275273000.0 99723.0 143911.0 115165.0 138900.0 131244.0 136034.0 145697.0 134286.0 120303.0 152012.0 True False 99186.10244826681 148700.99063896327 131379.23096787528 156484.72575826212 147957.1454558661 126630.2897695916 138649.07949341036 144307.10321049113 90655.93762761001 142310.46401597906 0.6969698478189903 1.0449055286775444 0.9231874260006883 1.099600980435926 1.039678610276002 0.8898171377993199 0.974271853107319 1.0140301643193848 0.6370293165331179 1.0 17.11868222083341 -0.7916313503002753 7.503639933462158 1.0000000049822304 0.9431151519042721 0.009486416849023516 0.14411353779176947 0.0 0.0 0.1306348899437331 0.03079093884625734 0.16157294825046867 0.7916313503002753 -0.05688485307795832 QPS(ph)VETLDSPTGSHVEWCK ddPTM_BT-474_Trastuzumab_2h_R1 3 QPSVETLDSPTGSHVEWCK 19 0 F8WA39;Q13613;Q13613-2;E9PPP8;Q8NEC6 F8WA39 MTMR1 Myotubularin-related protein 1 1 QPS(0.829)VET(0.171)LDS(0.001)PTGSHVEWCK;QPS(0.993)VET(0.007)LDSPTGSHVEWCK;QPS(0.999)VET(0.001)LDSPTGSHVEWCK 215.36 2.6298e-19 1618270000.0 1110830.0 1081160.0 986230.0 1151410.0 1146190.0 1363380.0 1171090.0 981730.0 1237580.0 1261680.0 True False 1104849.414704816 1117145.7570249778 1125082.611535167 1297178.3879432736 1292150.502499614 1269132.7496513082 1114439.902701756 1054991.6777239307 932594.991722382 1181158.502221407 0.9353947100468936 0.9458051183850091 0.9525246691440837 1.098225501068373 1.0939687603902983 1.0744813225866368 0.9435142706129845 0.8931838324321468 0.7895595637405556 1.0 20.171771145426916 1.9752987030307392 3.6034942248196615 0.8859666406167132 1.0177695644374956 0.3571830175330132 0.07383348196213439 0.2603103869390545 6.853146955451113 0.036934416776105594 0.02202083096763362 94.4710414456665 -1.9752987030307392 0.1318029238207824 QPSGS(ph)FSTPGSATYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPSGSFSTPGSATYVR 16 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 QPS(0.003)GS(0.963)FS(0.024)T(0.009)PGSATYVR;QPS(0.001)GS(0.953)FS(0.023)T(0.023)PGSATYVR 154.48 3.6819e-07 390840000.0 170232.0 151271.0 163085.0 169993.0 155935.0 185925.0 171707.0 169433.0 214268.0 174404.0 True False 169315.48982655333 156305.96378974942 186045.95043976847 191514.09637022502 175792.39795084318 173072.4423703732 163400.8764255612 182076.9508233412 161464.5224441018 163273.3874052234 1.0370060456106924 0.9573266425949642 1.1394750448707636 1.1729657809751435 1.0766751443365918 1.060016240986229 1.0007808316000784 1.115166125459563 0.9889212504874894 1.0 17.316930133754514 -0.3422260088978073 7.898038760187006 1.00000017289565 1.0650151315439045 0.07032979976016263 0.0649394579368619 0.0 0.0 0.06368555765985122 0.015010829894975894 0.4547513438159601 0.3422260088978073 0.06501495864825446 QPSGSFS(ph)TPGSATYVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPSGSFSTPGSATYVR 16 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 QPSGS(0.186)FS(0.406)T(0.406)PGS(0.002)ATYVR 172.95 2.7658e-12 0.0 84599.0 78075.0 72774.0 96414.0 86798.0 105000.0 86351.0 83618.0 113240.0 91510.0 True False 84143.52838383253 80673.67917766585 83019.94663705259 108620.00251444988 97851.21080794757 97741.59714341362 82173.87223714606 89857.99976360046 85333.51933825895 85669.7534543473 0.9821847850732045 0.9416821681488342 0.9690695174148392 1.267892087168578 1.1421908767379805 1.1409113859012014 0.9591935184094563 1.0488882731696554 0.9960752295584984 1.0 16.386498316166513 2.229640902978505 24.9999334821471 1.0081634766993834 1.075119417326713 0.12497632399720837 0.09377992547048647 521.2262083026143 1460868.3928012839 0.03894753164331449 0.029174460699295895 169.68400376080317 -2.229640902978505 0.06695594062732946 QPSKEEEEEEEEEQLNQTLAEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPSKEEEEEEEEEQLNQTLAEMK 23 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 89.946 0.0051757 94053000.0 38010.0 30792.0 25571.0 24511.0 26780.0 27516.0 36815.0 34262.0 47622.0 31206.0 False True 37805.35838330798 31816.893105842948 29171.1745328836 27614.090086830565 30190.27426250416 25613.88368569683 35034.117803042616 36818.80441891078 35886.19620210674 29214.40636319927 1.2940656028845599 1.0890823078959417 0.9985201879587009 0.9452216739757346 1.033403653224122 0.8767552339506739 1.1992069038641944 1.260296168991837 1.2283732811806087 1.0 14.83439235356388 2.122588308257033 15.545468752526192 1.2012891602879154 1.0353411658695002 0.2054283491571921 0.12214330542295214 1.0595257223504717 138.59396199704526 0.04604909868420535 0.034009688040167345 132.6136743380472 -2.122588308257033 -0.16594799441841523 QPSPS(ph)PSPTER ddPTM_BT-474_Trastuzumab_2h_R1 1 QPSPSPSPTER 11 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;P29590-14;P29590-10;P29590-12;P29590-13;P29590-11;H3BT57 P29590-2;P29590-12 PML Protein PML 1 QPS(0.337)PS(0.609)PS(0.054)PTER 88.101 0.013878 188100000.0 97686.0 86105.0 90558.0 97154.0 85184.0 101370.0 86413.0 87121.0 94454.0 86381.0 True False 97160.06942993496 88970.95287342845 103307.77925575348 109453.68643857593 96031.67747487513 94362.5304993128 82232.87306028315 93622.4114114741 71177.07731875578 80868.09062550511 1.2014636264862113 1.1001985107506393 1.2774850804152793 1.35348424319116 1.1875101382026145 1.1668697723592802 1.0168766496676453 1.1577175952506833 0.8801627040803055 1.0 16.30328292796964 1.9525847586308138 0.965640783014623 0.9763351151757955 1.2272548853284169 0.5691120507062533 0.08685324705561234 0.43848635044431933 0.7520091015468823 0.07395656812791798 0.03419442303134326 89.65711472516774 -1.9525847586308138 0.25091977015262135 QPSS(ph)PSHNTNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 QPS(0.37)S(0.629)PSHNTNLR;QPS(0.189)S(0.785)PS(0.026)HNTNLR 91.657 0.0052655 563050000.0 188272.0 204534.0 204162.0 230850.0 211710.0 219530.0 217430.0 206669.0 222470.0 225740.0 True False 187258.36447098586 211341.7905465862 232906.23499208415 260075.5863304162 238670.0135965184 204354.40781803397 206912.08023673948 222091.69022391769 167645.249445271 211333.0799342625 0.8860816514349512 1.0000412174578936 1.10208129775297 1.2306430512975801 1.1293547307915985 0.9669778525993218 0.9790804179880489 1.0509083116235365 0.7932750021786411 1.0 17.68915908421692 2.7196862028683286 23.22016754578677 0.9703675391748836 1.076520630007669 0.2179613972126473 0.10398494631205789 580.2919789359894 713899.8277926174 0.03574434367989663 0.033768792958732446 524.4284004148925 -2.7196862028683286 0.10615309083278546 QPSS(ph)PYEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 QPSSPYEDK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QPS(0.007)S(0.993)PYEDK;QPS(0.032)S(0.968)PYEDK 101.89 0.0038582 541220000.0 1299610.0 1059260.0 984360.0 887720.0 964210.0 1291360.0 1131620.0 1118290.0 1366160.0 1230690.0 True False 1292613.044160244 1094516.8287638084 1122949.3317894982 1000105.2609800185 1086996.4281795782 1202091.3227344626 1076879.2173918 1201742.47836156 1029488.173606111 1152146.3105532804 1.1219174442693038 0.9499807608967672 0.974658618878221 0.8680366823374636 0.9434534643934102 1.04334953965803 0.9346722786228983 1.0430467618166157 0.8935394438851547 1.0 20.135892504946852 4.741794142666413 24.75475512269913 0.9644510652170143 1.1219175115153441 0.4386390997541978 0.0544347603395435 258.69494021944735 1980374.5699579145 0.012852461419140614 0.09179134592707602 55181.58143615224 -4.741794142666413 0.15746644629832984 QPSS(ph)PYEDKDK ddPTM_BT-474_Trastuzumab_2h_R1 6 QPSSPYEDKDK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QPSS(1)PYEDKDK;QPS(0.002)S(0.998)PYEDKDK;QPS(0.002)S(0.998)PYEDKDK;QPS(0.034)S(0.966)PYEDKDK;QPS(0.002)S(0.998)PYEDKDK;QPSS(1)PYEDKDK 248.23 2.0160999999999999e-16 15872750000.0 15802240.0 9048070.0 8132140.0 6956829.0 7583790.0 11602870.0 11279220.0 11316620.0 17026840.0 10126320.0 True False 15717162.495633904 9349229.540276174 9277074.626171991 7837562.838100249 8549540.703854991 10800790.907118076 10733601.03779531 12161123.649031976 12830803.429966813 9480049.588021284 1.657919861040986 0.9862004890870602 0.9785892510408631 0.8267428102911578 0.901845567839428 1.1393179758010594 1.1322304739162945 1.2828122401805175 1.3534531977743496 1.0 23.176463174882866 2.1509765271577117 2.3784869947755585 1.236180819234219 1.0488564771858893 0.047798831985529366 0.23018103657429545 0.6913481627994965 7.803825904514691 0.11011035135739643 0.07007058990281709 141.57172608958768 -2.1509765271577117 -0.1873243420483297 QPSS(ph)PYEDKDKDK ddPTM_BT-474_Trastuzumab_2h_R1 4 QPSSPYEDKDKDK 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QPS(0.004)S(0.996)PYEDKDKDK;QPS(0.093)S(0.907)PYEDKDKDK;QPS(0.093)S(0.907)PYEDKDKDK;QPS(0.098)S(0.902)PYEDKDKDK 199.01 6.326e-08 1324880000.0 2824580.0 1289857.0 1046451.0 931162.0 957406.0 1959320.0 1753000.0 1656960.0 3369540.0 1602530.0 True False 2809372.775120339 1332789.110509978 1193782.2048848525 1049047.0137258086 1079325.979110048 1823876.8201431714 1668200.6928896848 1780610.7690723944 2539162.016522756 1500255.1634050414 1.8725966379906134 0.8883749531546516 0.7957194442679969 0.6992457278699498 0.7194282715617287 1.2157110767768495 1.1119446435388145 1.1868719485231074 1.6924867705569286 1.0 20.516776464493407 1.9657965386464527 1.5769496863541712 1.326255203423965 0.9783983927607687 0.09467219113690417 0.3583595487114146 0.8122738709734041 3.761280155266971 0.24088598135321523 0.1134963463592717 92.42650662517293 -1.9657965386464527 -0.3478568106631963 QPSS(ph)PYEDKDKDKK ddPTM_BT-474_Trastuzumab_2h_R1 5 QPSSPYEDKDKDKK 14 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QPS(0.255)S(0.745)PYEDKDKDKK;QPS(0.196)S(0.804)PYEDKDKDKK;QPS(0.194)S(0.806)PYEDKDKDKK;QPS(0.209)S(0.791)PYEDKDKDKK;QPS(0.15)S(0.85)PYEDKDKDKK 182.31 1.2606999999999998e-06 15063600000.0 10798070.0 4790232.0 3721011.0 3961264.0 3413955.0 7135530.0 7395860.0 6501640.0 15457290.0 5899400.0 True False 10739934.390898356 4949671.976363604 4244897.005192593 4462759.616242448 3848701.9331533792 6642267.606330875 7038093.9968711315 6986825.391458959 11648047.996574314 5522895.241269548 1.94462033439359 0.8962096436987319 0.7685999498003909 0.8080471240690404 0.6968631062190268 1.2026785438001566 1.2743486322679705 1.265065710327125 2.1090474267074413 1.0 22.396993331834675 1.93546346670762 1.647428843587468 1.5184874167401599 1.0015463658565809 0.1588788133848329 0.42184277430348605 0.6077630034438763 3.0723162626912677 0.2773540138036368 0.12884854667189613 86.19130706542201 -1.93546346670762 -0.516941050883579 QPSSSS(ph)SPSPSFQQQTSCHSSPENHNNAK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPSSSSSPSPSFQQQTSCHSSPENHNNAK 29 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 QPS(0.001)S(0.007)S(0.061)S(0.542)S(0.382)PS(0.006)PSFQQQTSCHSSPENHNNAK 214.92 4.8347999999999995e-34 121100000.0 24724.0 60267.0 81083.0 95105.0 85328.0 93705.0 103870.0 70315.0 58818.0 92625.0 True False 24590.88873109462 62272.9506628292 92498.78161392976 107145.28324866462 96194.01502132013 87227.39390784362 98845.41127806701 75562.26235233518 44323.09202082052 86713.59319974796 0.2835874725482613 0.7181451992120907 1.0667160499375847 1.2356226895344022 1.1093302845810307 1.0059252614167666 1.139906762373149 0.8714004294375707 0.5111435287743255 1.0 16.403970547214445 4.592917160118773 2.6420710656287247 1.0008784387737533 0.24227243424625658 0.5748400667928075 0.18759754408735319 0.2580712218605773 2.8335204884431886 0.04919476446180429 0.3679604723596787 39166.71610865309 -4.592917160118773 -0.7586060045274967 QPT(ph)PPFFGR ddPTM_BT-474_Trastuzumab_2h_R1 3 QPTPPFFGR 9 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR 101.71 0.042453 30852600000.0 1370850.0 1654530.0 1513480.0 1645300.0 1539730.0 1602110.0 1689660.0 1402440.0 1753530.0 1625250.0 True False 1363469.4959157514 1709600.0308654923 1726564.8285960152 1853594.8113035886 1735805.4888052861 1491359.906661281 1607924.6906719825 1507097.1942460206 1321396.0275981736 1521525.1535534705 0.8961202466692152 1.1236094433751418 1.1347593068466082 1.2182478922379827 1.1408325946839402 0.9801743357171981 1.0567848233837795 0.9905174362226258 0.8684680792243874 1.0 20.53708675372344 2.053404283300362 1.2332381265045522 0.9456291733071375 1.1048546642208668 0.3090737401688719 0.08949974382424826 0.5596624572980666 1.5860244054338533 0.06574889809399175 0.03191637800891739 113.08481276371023 -2.053404283300362 0.15922549091372928 QPT(ph)PPSEAAASK ddPTM_BT-474_Trastuzumab_2h_R1 1 QPTPPSEAAASK 12 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 QPT(0.888)PPS(0.112)EAAASK 88.311 0.017725 0.0 243380.0 283150.0 304270.0 216700.0 288250.0 415210.0 294020.0 269840.0 373440.0 315260.0 True False 242069.66912205992 292574.47658221086 347108.5712377497 244134.19778124825 324956.92890839546 386507.50999920705 279797.1293345263 289976.83101975615 281410.71583962726 295139.836892335 0.8201863620679756 0.9913079835743761 1.1760817343148853 0.8271814484681265 1.1010269990321149 1.3095741803916574 0.948015463722691 0.9825065774686924 0.9534826569084403 1.0 18.17103913803333 4.697547342493888 4.067470374728865 1.0359923262638588 0.8091741521429691 0.2057588310090145 0.12707004064362798 0.3255853170535813 10.713433046050454 0.030881817053378054 0.19643866828393913 49836.47798143469 -4.697547342493888 -0.22681817412088978 QPVNVFLSSGRPPS(ph)VEELLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QPVNVFLSSGRPPSVEELLR 20 1 A0A1W2PQQ1;Q5HYW2 A0A1W2PQQ1 NHSL2 NHS-like protein 2 1 QPVNVFLSSGRPPS(1)VEELLR 164.79 1.0674e-11 74746000.0 21117.0 31664.0 25875.0 25163.0 24475.0 28776.0 31744.0 25362.0 28975.0 28738.0 True False 21003.30841831927 32717.917098707785 29517.975090468237 28348.63321997947 27591.74617530954 26786.782851417793 30208.421446143824 27254.641225626478 21834.49949510822 26903.916236160356 0.7806784794434373 1.216102399796097 1.0971627636423593 1.0536991332837016 1.0255661641640375 0.995646232923327 1.1228261782030837 1.0130362058217655 0.8115732781594615 1.0 14.715528571783192 1.4214369758733867 8.203912209510412 0.9064823106493679 1.0496619931819098 0.17979839782500717 0.113552542689611 0.3596230270125264 43.80263560590341 0.06760578685737026 0.02603433528151443 26.389853292100202 -1.4214369758733867 0.14317968253254187 QPYAVSELAGHQTSAESWGTGR ddPTM_BT-474_Trastuzumab_2h_R1 6 QPYAVSELAGHQTSAESWGTGR 22 0 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 ;;;;; 340.33 3.193699999999999e-81 10681380000.0 1777127.0 2610170.0 2570700.0 2662250.0 2730300.0 2678130.0 2661450.0 2376210.0 2584040.0 2853640.0 False True 1767559.145689372 2697047.930568913 2932632.2150750426 2999290.5770333586 3077987.521244029 2492997.176739906 2532705.495773673 2553534.8563498934 1947237.966362015 2671518.252075884 0.6616309449938823 1.0095562433358602 1.0977399135477595 1.122691403924634 1.1521491641886785 0.9331761723142787 0.9480397499832361 0.9558365750882246 0.7288881387386846 1.0 21.34922844315318 1.883731134639529 1.5995211990249572 0.8782708613023302 1.0143272455328416 0.0903849256579573 0.14455499559829635 0.8380500420195819 4.019911875300485 0.10304876857040919 0.045582460669208236 76.5122783935367 -1.883731134639529 0.13605638423051136 QPYPSRPPFDNQHS(ph)QDLDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 QPYPSRPPFDNQHSQDLDSR 20 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 QPYPSRPPFDNQHS(1)QDLDSR;QPYPSRPPFDNQHS(1)QDLDSR;QPYPSRPPFDNQHS(1)QDLDSR;QPYPSRPPFDNQHS(1)QDLDSR;QPYPSRPPFDNQHS(1)QDLDSR 190.19 1.158e-17 2263690000.0 1492710.0 1341302.0 1200820.0 1412223.0 1228224.0 1272216.0 1170607.0 1100851.0 1269074.0 1340960.0 True False 1484673.4152156736 1385946.426235818 1369885.0182854522 1591010.2870015143 1384631.0461459996 1184270.7023943341 1113980.2672569961 1183002.0916281103 956327.71742036 1255378.784746384 1.182649757392238 1.104006570029628 1.0912124969215575 1.2673547668108283 1.1029587746504157 0.9433572693627961 0.8873658538701897 0.9423467291325179 0.7617841953682215 1.0 20.259691302762135 2.7413358921971116 3.1145199631318614 0.900018493727386 1.1552604437122522 0.7440596846862002 0.07199723361620244 0.12696862979183243 2.534397637699019 0.02335948461489921 0.023381046268950583 551.2338670788052 -2.7413358921971116 0.25524194998486627 QQAAYYAQTS(ph)PQGMPQHPPAPQGQ ddPTM_BT-474_Trastuzumab_2h_R1 6 QQAAYYAQTSPQGMPQHPPAPQGQ 24 0 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 QQAAYYAQT(0.001)S(0.999)PQGMPQHPPAPQGQ;QQAAYYAQT(0.001)S(0.999)PQGMPQHPPAPQGQ;QQAAYYAQT(0.003)S(0.997)PQGMPQHPPAPQGQ;QQAAYYAQT(0.099)S(0.901)PQGMPQHPPAPQGQ;QQAAYYAQT(0.028)S(0.972)PQGMPQHPPAPQGQ;QQAAYYAQT(0.023)S(0.976)PQGMPQHPPAPQGQ 226.07 3.5534999999999996e-33 3472810000.0 1250244.0 1319203.0 1278546.0 1375267.0 1284716.0 1383809.0 1280383.0 1230299.0 1328149.0 1328513.0 True False 1243512.8252191658 1363111.874379945 1458554.1634789493 1549375.661190699 1448316.9674916826 1288149.540966001 1218445.982751953 1322110.1587117352 1000844.4752348046 1243726.1629427983 0.9998284688945291 1.095990351408759 1.1727293410213735 1.2457530502733005 1.1644982719224939 1.0357179734147361 0.9796738374217122 1.0630235160314319 0.804714498299764 1.0 20.24623744478246 2.5434176109128437 3.2486509212148214 0.9786518295465951 1.1412812305169908 0.4763442202732693 0.08523144667628214 0.24820528026293015 5.150533657705791 0.031247219647634702 0.028117369662069364 349.4762049182258 -2.5434176109128437 0.1626294009703957 QQAGAQGPGS(ph)ADLEDGEMGKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQAGAQGPGSADLEDGEMGKR 21 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 QQAGAQGPGS(1)ADLEDGEMGKR 192.3 6.9409e-18 261570000.0 90355.0 81954.0 75248.0 78150.0 80001.0 100390.0 94254.0 72308.0 90494.0 87922.0 True False 89868.53871938433 84681.7893477609 85842.26433265905 88043.78198709997 90188.65314692297 93450.27559264087 89694.57393475433 77703.99013258418 68192.96625747439 82310.74268618877 1.0918202872012686 1.0288060414010818 1.0429047476820161 1.0696511671965896 1.095709383777144 1.135335103814113 1.0897067746881663 0.9440321833667822 0.8284819700565859 1.0 16.328793114068375 1.6468661245126845 4.2837956730774405 0.9067680260728561 1.0781886324172756 0.6896910006356054 0.04771518647580682 0.08768504113652492 3.705274075056813 0.02678254654338504 0.012383978418505404 44.34719183378894 -1.6468661245126845 0.17142060634441947 QQAISEKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQAISEKDR 9 1 Q9H6T3;Q9H6T3-3;Q9H6T3-2 Q9H6T3 RPAP3 RNA polymerase II-associated protein 3 0 73.885 0.033004 0.0 39104.0 49566.0 54328.0 53139.0 46124.0 45280.0 55808.0 37169.0 84477.0 54785.0 False True 38893.46840886285 51215.77434672025 61976.91017255874 59866.39195153559 51997.61800163338 42149.900177654905 53108.35383273675 39942.73952035765 63658.77528380521 51288.574396201744 0.7583261743329557 0.9985805795864179 1.2083960395114537 1.1672461684949678 1.0138245918078033 0.821818517552252 1.0354811857798445 0.7787843587112001 1.2411882379893087 1.0 15.646349850647997 2.989162361632162 24.757685030489338 0.9483821314671346 1.0491058907821487 0.01057317719701345 0.16346374086985724 1323.7468094899032 3024001.167249598 0.048829913433741344 0.054881988419585914 975.3542071736433 -2.989162361632162 0.1007237593150141 QQALTVSTDPEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 QQALTVSTDPEHR 13 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ;;; 201.76 9.9301e-08 2304880000.0 1730100.0 1764140.0 1638610.0 1664980.0 1683840.0 1701960.0 1477080.0 1547290.0 1739340.0 1589760.0 False True 1720785.3338321806 1822858.3334548492 1869312.0449465567 1875766.2972857535 1898267.0430983948 1584307.5111828959 1405627.9974064443 1662756.636779419 1310702.9629619145 1488300.1557379882 1.1562085290375532 1.2247921405013675 1.2560047365040017 1.2603413968976147 1.2754598162069803 1.0645080597987988 0.9444519588250999 1.117218613710972 0.8806711185970344 1.0 20.505234083354367 2.61409542581942 4.290625402264452 1.006420746451223 1.2361334343643045 0.7690459561427923 0.06451093712781396 0.11425287192077534 3.4645667307982864 0.02124610675295679 0.019877880496536614 411.24007134241526 -2.61409542581942 0.22971268791308153 QQASKS(ph)PYNGVR ddPTM_BT-474_Trastuzumab_2h_R1 6 QQASKSPYNGVR 12 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 QQAS(0.017)KS(0.983)PYNGVR;QQAS(0.019)KS(0.981)PYNGVR;QQAS(0.001)KS(0.999)PYNGVR;QQASKS(1)PYNGVR;QQAS(0.099)KS(0.901)PYNGVR;QQAS(0.003)KS(0.997)PYNGVR 242.19 1.683e-16 3289006000.0 3343470.0 3064396.0 2896199.0 3273220.0 2881193.0 3470900.0 3351310.0 3322159.0 4692860.0 3907550.0 True False 3325469.1290144376 3166392.568393498 3303958.6449870146 3687609.316389195 3248095.8503811494 3230964.8526197555 3189194.3320525503 3570075.3741615857 3536367.5341022825 3658166.81357813 0.9090534408303065 0.8655681191575796 0.9031733142194636 1.008048430897624 0.8879026069355537 0.883219660904277 0.871801231210977 0.975919239360662 0.966704831768808 1.0 21.80268943326666 1.644058209967369 6.445904263907235 0.9797067251401811 0.9053259302773663 0.45686287526932645 0.038310907987691156 0.13080660419707033 11.17363399825468 0.021035379267877408 0.010427645219948226 44.06139165316241 -1.644058209967369 -0.07438079486281479 QQDAQEFFLHLINMVER ddPTM_BT-474_Trastuzumab_2h_R1 3 QQDAQEFFLHLINMVER 17 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ;; 229.96 9.43e-16 982480000.0 795750.0 904540.0 810630.0 923700.0 822160.0 869900.0 863300.0 762180.0 1009330.0 881010.0 False True 791465.7704161367 934647.0670940233 924759.65787773 1040640.3252909058 926857.2026758934 809765.8605243387 821538.8808737393 819057.74187162 760594.145829079 824783.1875293918 0.9596046359612928 1.1332033451042143 1.1212154562071204 1.2617137946374806 1.1237586030969673 0.98179239437453 0.9960664733414719 0.9930582415544595 0.9221746482338118 1.0 19.65365539938922 2.742014578229244 7.143370653644986 0.9806826013644593 1.1288359752791806 0.49464676746002334 0.07111169703659181 0.11435305756689583 42.27573295003995 0.02290180407924538 0.02305130743543142 552.0959715138125 -2.742014578229244 0.14815337391472128 QQDLHLES(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQDLHLESPQR 11 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QQDLHLES(1)PQR 88.78 0.013346 297250000.0 200630.0 213200.0 200990.0 170080.0 201830.0 199970.0 188560.0 199960.0 224210.0 242910.0 True False 199549.8303720886 220296.23311787832 229287.6449636024 191612.1105613045 227531.8541598661 186146.54457874678 179438.63243084948 214882.03057630616 168956.4497600764 227407.2758342862 0.877499761782039 0.968729924360073 1.0082687289684014 0.8425944590310032 1.0005478203154357 0.8185601973192516 0.7890628467033222 0.9449215280732385 0.7429685314167191 1.0 17.79491888804305 2.7289323352604344 24.934993584853885 0.8573576338381169 0.9395841786388973 0.18792123237671965 0.08355456849503184 1079.1579156737675 2794761.571400251 0.02543603325935954 0.02426358982108292 535.713184849861 -2.7289323352604344 0.0822265448007804 QQDLHLES(ph)PQRQPEYS(ph)PESPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 QQDLHLES(1)PQRQPEY(0.002)S(0.875)PES(0.123)PR 148.35 1.2066e-07 670710000.0 354570.0 448360.0 371640.0 427300.0 538750.0 484140.0 465760.0 431340.0 524990.0 458290.0 True False 352661.0345164305 463283.39156065613 423963.68164721155 481396.1361879443 607356.6190785697 450672.54134297435 443229.4094240157 463528.78110013885 395613.24900558597 429041.5398381915 0.8219741022033273 1.079810108213248 0.9881646467311883 1.1220268703340424 1.4156126218165912 1.0504170330754938 1.0330687550468307 1.0803820564203501 0.9220861205066236 1.0 18.71075781078001 5.337541072205883 1.4379136355288744 1.0913068004942308 1.1274698253403874e-13 0.26168752070459156 0.12617307694509342 8.226154268086006 4.537926003825882 0.034894479749087874 19.75521509036032 217540.97576847806 -5.337541072205883 -1.091306800494118 QQDLHLES(ph)PQRQPEYSPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 QQDLHLES(1)PQRQPEYS(0.089)PES(0.911)PR;QQDLHLES(1)PQRQPEY(0.007)S(0.49)PES(0.503)PR;QQDLHLES(0.996)PQRQPEY(0.002)S(0.003)PES(0.999)PR;QQDLHLES(1)PQRQPEY(0.094)S(0.162)PES(0.744)PR 203.26 3.3798e-22 1717630000.0 722335.0 876436.0 814720.0 943530.0 1030020.0 975820.0 891010.0 949320.0 1093550.0 946040.0 True False 718446.0286189636 905607.642443251 929425.4943268127 1062980.8012576888 1161186.9415931492 908363.8602331994 847908.4423112583 1020163.0789492838 824059.2553192615 885662.9172544078 0.8111957886259666 1.022519544174518 1.0494122269543256 1.200209222435296 1.3110935537336004 1.0256315834574687 0.9573715075932162 1.1518638288614726 0.9304434444132309 1.0 19.75639818886284 4.7656069768558575 1.9863490756548252 1.0911687782098454 0.7167317654353597 0.3415544338070243 0.11027837152700291 0.9220027691529887 3.6828161623210214 0.02900211397524566 0.6443441155947973 58291.73432450535 -4.7656069768558575 -0.3744370127744857 QQDLHLES(ph)PQRQPEYSPESPR ddPTM_BT-474_Trastuzumab_2h_R1 4 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QQDLHLES(1)PQRQPEYSPESPR;QQDLHLES(1)PQRQPEYSPESPR;QQDLHLES(1)PQRQPEYSPESPR;QQDLHLES(1)PQRQPEYSPESPR 237.97 4.2823999999999996e-30 2099900000.0 776450.0 959680.0 862050.0 1045940.0 1078020.0 940150.0 908420.0 922620.0 1026340.0 923420.0 True False 772269.6794717052 991622.368661189 983419.1469270766 1178355.8967573557 1215299.4570748599 875159.6433750503 864476.2540986001 991470.5893694324 773412.2592514008 864486.5450203626 0.893327587248353 1.147065127124485 1.1375760011440232 1.3630702566106452 1.4058049417602376 1.012346170586653 0.9999880959144803 1.1468895555176961 0.8946492732668077 1.0 19.721483984188165 QQDS(ph)QPEEVMDVLEMVENVK ddPTM_BT-474_Trastuzumab_2h_R1 7 QQDSQPEEVMDVLEMVENVK 20 0 Q9H307 Q9H307 PNN Pinin 1 QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK 168.57 4.0396e-11 282662000.0 126050.1 121213.7 116285.6 99931.09999999999 101359.40000000001 140711.0 127519.4 130382.79999999999 158052.0 143272.0 True False 125371.46026708256 125248.22472927108 132657.6017074455 112582.36701383349 114266.91878576786 130983.97976806542 121350.7994505856 140112.62660644317 119102.20238829473 134128.25829866974 0.9347132502676058 0.9337944614950187 0.9890354455513061 0.8393635199760888 0.8519227807411344 0.9765576727045631 0.9047370106034482 1.0446167599854146 0.8879724817054152 1.0 17.033253692384022 1.7747253870169462 24.999999999566192 0.9817032674273166 0.9185017567913892 0.1808567176981335 0.05727617417994 66.47083735043527 45969.8904016993 0.02637057729874365 0.014635470707254754 59.52856136408946 -1.7747253870169462 -0.06320151063592738 QQEEIS(ph)KLEER ddPTM_BT-474_Trastuzumab_2h_R1 1 QQEEISKLEER 11 1 B4DDJ5;P21757-2;P21757-3;P21757 B4DDJ5 MSR1 Macrophage scavenger receptor types I and II 1 QQEEIS(1)KLEER 64.82 0.040658 155790000.0 79306.0 187790.0 184810.0 207970.0 263730.0 237620.0 131480.0 110120.0 84183.0 155060.0 True False 78879.02530772497 194040.47662854765 210829.64160268317 234298.98067635542 297314.4522498214 221193.88869731373 125119.81009762446 118337.71357802961 63437.22764440712 145163.938046455 0.5433789298446994 1.336698902219443 1.4523554847018134 1.6140302049492186 2.048128868994141 1.5237523290841546 0.8619207482342063 0.8152004910486753 0.43700404176212204 1.0 17.14732357471767 2.1804930910033367 5.07688449959419 0.7593871631105428 1.4551617418013014 0.41347271789706797 0.3736302511284538 0.2017811599717523 10.553499470343256 0.15025797995429646 0.11111661235168746 151.52806975840858 -2.1804930910033367 0.6957745786907586 QQEEMMR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQEEMMR 7 0 Q15233;Q15233-2;H7C367 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ; 159.2 0.0032394 624110000.0 612320.0 697100.0 717930.0 687710.0 639110.0 589680.0 681130.0 567330.0 807930.0 646120.0 False True 609023.3371551476 720302.5520941511 819008.3036405746 774774.0154875054 720496.8701982454 548916.8095574103 648181.1397307192 609667.0454433679 608826.4772073427 604884.0684288383 1.0068430777769712 1.1908109168176766 1.3539921885658441 1.2808636496245458 1.1911321653250129 0.9074744041171383 1.071579123276206 1.0079072623402914 1.0065176270698362 1.0 19.20629913760149 2.8487700199696606 6.292753709236241 1.0064971135272003 1.2190837128075118 0.5617116952428849 0.09065705625409969 0.18498394718709008 9.202742731597928 0.028888942555908483 0.030710856435446514 705.9436238142396 -2.8487700199696606 0.21258659928031154 QQEGFKPNYMENR ddPTM_BT-474_Trastuzumab_2h_R1 5 QQEGFKPNYMENR 13 1 Q8WXF1 Q8WXF1 PSPC1 Paraspeckle component 1 0 ;;;; 196.18 1.3125e-07 2083770000.0 2040260.0 2129070.0 2183700.0 1968300.0 1860111.0 2208320.0 2195140.0 1985810.0 2769560.0 2266230.0 False True 2029275.4668541972 2199934.8079000046 2491145.97893934 2217486.578185654 2096985.1101083243 2055664.0362261233 2088952.6919508628 2134001.225938859 2087039.048202654 2121597.2611828814 0.9564847692736882 1.0369238536221745 1.1741841981594656 1.0451967575360226 0.9883992350834603 0.9689228365047957 0.9846132110795534 1.0058465218554542 0.9837112285104669 1.0 21.01671938748138 3.2951529273948115 4.971988207738797 0.9887507339560244 1.062121554640319 0.28122530706944837 0.05029618802982508 0.2538496717814128 12.836915955936906 0.014744077394647575 0.019820023070485193 1973.1174043569272 -3.2951529273948115 0.07337082068429468 QQEIILWR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQEIILWR 8 0 O75436 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ; 108.74 0.0087288 270980000.0 147878.0 178034.0 161434.0 163179.0 171596.0 241550.0 191786.0 193465.0 290240.0 201787.0 False True 147081.84127879038 183959.7540661745 184162.50399051773 183837.44466888002 193447.733470824 224852.21704753832 182508.57848633267 207902.3406953642 218714.24101674563 188908.78090145788 0.7785865780136179 0.9738020286210783 0.9748752975468303 0.9731545764660708 1.0240272185745236 1.1902687422710643 0.9661201433592237 1.100543551778115 1.1577769967762135 1.0 17.527330237404815 5.888679943556705 0.5300786196229886 1.0808725386781162 4.102199065928518e-15 0.6055793715963146 0.0693839165845521 8.50295268728649 0.7168164841770395 0.034358953051238345 7.429304836412236 773891.2628639202 -5.888679943556705 -1.0808725386781122 QQEKEDKDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQEKEDKDEK 10 2 Q06323;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 133.05 0.00011667 361730000.0 1482200.0 697960.0 642990.0 547210.0 536670.0 637400.0 1034400.0 981130.0 2075900.0 1054400.0 False True 1474219.9998879007 721191.1766742695 733517.4030307312 616486.7298932939 605011.7434076961 593338.0382782079 984362.1202082663 1054346.9026771914 1564322.2606348637 987107.2892827425 1.4934749402560958 0.7306107294560711 0.743097949933815 0.6245387270326501 0.6129138645580393 0.6010876879547131 0.997218975987432 1.0681178369610733 1.584754035978744 1.0 19.912847375029298 1.7063657300556871 2.3365072676877667 1.2865591040697495 0.7846598182212162 0.30037547139669074 0.28352526131258055 0.2993768490178986 3.495464352396596 0.1860811764774757 0.07829692826373381 50.85875563520674 -1.7063657300556871 -0.5018992858485333 QQELTHQEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQELTHQEHR 10 0 P18206;P18206-2;P18206-3 P18206 VCL Vinculin 0 ; 117.09 0.00058038 801640000.0 178272.0 220890.0 220080.0 260940.0 261250.0 210820.0 196881.0 94637.0 208415.0 168571.0 False True 177312.20335988107 228242.19011917547 251065.35103034746 293974.9772452187 294518.6389499332 196246.50961689948 187357.1138715423 101699.29349694867 157053.91586791992 157812.65445910604 1.123561377049316 1.4462857297563538 1.590907597941748 1.8628099137727665 1.866254895460565 1.2435410220398568 1.1872122328446868 0.6444305359764542 0.9951921562070757 1.0 17.2678533692268 2.2409376568276063 2.204248402187403 0.8600158733570548 1.5800508246282423 0.6123815349386482 0.23320021679273853 0.19855743555690045 1.9621469051479168 0.113125929667915 0.07663199345836717 174.1556854160363 -2.2409376568276063 0.7200349512711876 QQENVTLLLSLLEEFDFHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQENVTLLLSLLEEFDFHVR 20 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 75.146 0.012838999999999998 189420000.0 125190.0 129990.0 137560.0 142940.0 126270.0 124410.0 149140.0 115160.0 131340.0 126260.0 False True 124515.99094991665 134316.63856938577 156927.25230704588 161036.18934403153 142349.73603907402 115809.82952963885 141925.52842987294 123753.82397063101 98973.01686583311 118201.9787033756 1.0534171450918421 1.1363315575828847 1.3276195037381753 1.36238150249707 1.2042923274262312 0.9797621901090187 1.2007034906414797 1.046969139841454 0.8373211510629868 1.0 16.850894660896873 1.8127818223558374 1.0052975486435638 0.9298111139240547 1.211063766655556 0.43704567443779296 0.11604694244085613 0.5174979758143328 0.9675945909204359 0.10490355971112716 0.04424705021373568 64.980316503157 -1.8127818223558374 0.28125265273150124 QQETHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQETHLK 7 0 P40222 P40222 TXLNA Alpha-taxilin 0 72.547 0.051308000000000006 442870000.0 115230.0 111180.0 93084.0 110260.0 105610.0 104120.0 112820.0 94960.0 137170.0 120570.0 False True 114609.6144832564 114880.5590902707 106189.41809936796 124218.90469478744 119058.80750048773 96922.42947211649 107362.46558574692 102046.39739710944 103366.29148383072 112875.11937482962 1.0153664963371332 1.017766888988011 0.9407690435900214 1.1004985454968865 1.0547834470511048 0.8586695633983048 0.9511614798760338 0.9040645800624959 0.9157579815315854 1.0 16.784367987913786 2.7497090740412298 24.991253834705326 0.9208813591079427 1.0248104324563658 0.49635550015544116 0.05018449722972866 590.1228675194935 1322865.4475541208 0.01511861425741683 0.015899740350527138 561.9647491296106 -2.7497090740412298 0.10392907334842316 QQFHDAK ddPTM_BT-474_Trastuzumab_2h_R1 6 QQFHDAK 7 0 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;;;;; 110.31 0.0068323 3765450000.0 7238600.0 6432080.0 5850890.0 4929440.0 6143160.0 5507820.0 5318860.0 6188300.0 7404900.0 6115440.0 False True 7199628.18188407 6646167.894525525 6674644.455152456 5553506.598573131 6925455.01263797 5127077.367413675 5061566.421781642 6650102.369550681 5580061.615576424 5725147.383508401 1.2575446009692242 1.1608728036714258 1.1658467473482226 0.9700198486715484 1.2096553239113321 0.8955363109397849 0.8840936455822536 1.1615600305254434 0.9746581601811851 1.0 22.448881402572145 4.29455203109521 0.8005210528458678 1.012350598313518 1.3090403413458909 0.4173960458354129 0.09935856330294177 1.5783118628053494 1.1837810271397284 0.03844103877842478 0.37233791377132186 19703.89257579433 -4.29455203109521 0.29668974303237294 QQFS(ph)PSMTER ddPTM_BT-474_Trastuzumab_2h_R1 3 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 QQFS(0.969)PS(0.031)MTER;QQFS(0.986)PS(0.014)MTER;QQFS(1)PSMTER 220.53 5.0761e-06 444420000.0 690060.0 722970.0 667160.0 693100.0 639890.0 660740.0 612150.0 512700.0 620230.0 545000.0 True False 686344.7936328726 747033.6194054062 761090.3289413243 780846.3889348552 721376.1985748241 615064.5990146587 582537.9658599084 550960.2774378486 467382.6271562027 510217.6334020251 1.3452000650319909 1.4641470041408435 1.4916974230516735 1.530418272156401 1.4138597950149971 1.2054945943626758 1.1417440866864328 1.0798534612850599 0.9160456177098242 1.0 18.9607532345729 2.3586197238960986 1.159726305998088 0.9929435198814777 1.4677020198331934 0.9132649199617978 0.06140457131761017 0.13577835838345553 0.3606435189614009 0.040283137500419 0.025577046607662007 228.35983676577962 -2.3586197238960986 0.4747584999517157 QQGDHSLK ddPTM_BT-474_Trastuzumab_2h_R1 5 QQGDHSLK 8 0 Q13435;H0YCG1 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;;;; 101.9 0.0050697 4077990000.0 1297834.0 1195603.0 1119227.0 1069916.0 1094912.0 1070314.0 1201837.0 1223298.0 1414186.0 1285097.0 False True 1290846.6059469115 1235397.9230977253 1276804.4331045195 1205367.255899041 1234342.55314813 996325.712428148 1143699.5528468115 1314586.708541379 1065678.80942154 1203081.0092331048 1.0729506957887667 1.0268617936918651 1.0612788526338797 1.0019003264521593 1.0259845710098547 0.8281451579584392 0.9506421795950835 1.0926834506176377 0.8857913982873433 1.0 20.198302358707668 3.3164718346113204 2.218086179900886 0.9678788631267066 1.0486823205842752 0.2593723016943772 0.06873600001530326 0.518926546013279 5.219199172467679 0.02243097227788184 0.0322055111484936 2072.391653985369 -3.3164718346113204 0.08080345745756867 QQGDHSLKEHELLEQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQGDHSLKEHELLEQQK 17 1 Q13435;H0YCG1 Q13435 SF3B2 Splicing factor 3B subunit 2 0 51.88800000000001 0.09535 194450000.0 137590.0 119710.0 120390.0 109360.0 98563.0 154100.0 144550.0 45952.0 195150.0 106200.0 False True 136849.2307276862 123694.47498377693 137339.865551361 123204.96478706661 111114.41382132914 143447.4297123812 137557.56426537575 49381.17157952798 147057.89737602658 99422.22507760562 1.3764450616636907 1.2441330385356515 1.3813799222875787 1.239209489537143 1.1176013585955957 1.4428104943377702 1.3835695606088376 0.4966814164638009 1.4791249870060559 1.0 16.6012807708254 1.817891067242659 24.999999999302013 0.936404894540091 1.3069458932558455 0.26502023604972935 0.23896312017736684 109.5486528764372 34528.19005758971 0.09319573539636088 0.060063061566270975 65.74928997366743 -1.817891067242659 0.3705409987157545 QQGDHSLKEHELLEQQKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQGDHSLKEHELLEQQKR 18 2 Q13435;H0YCG1 Q13435 SF3B2 Splicing factor 3B subunit 2 0 213.99 6.7445000000000006e-18 177100000.0 188670.0 176440.0 180190.0 207570.0 199710.0 231060.0 233550.0 44278.0 385420.0 171070.0 False True 187654.22168320767 182312.69873976766 205559.185760443 233848.34071736832 225141.8847260907 215087.36605673446 222252.2942523594 47582.249199128244 290438.40536340314 160152.1661396044 1.1717245305294826 1.1383717319242872 1.2835242302077723 1.4601634580048268 1.4057998099746891 1.343018775464099 1.3877570288910261 0.29710649781440274 1.8135153108714646 1.0 17.28908378586649 QQGHEPVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 QQGHEPVSPR 10 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 QQGHEPVS(1)PR;QQGHEPVS(1)PR;QQGHEPVS(1)PR;QQGHEPVS(1)PR 139.86 2.597e-05 3513760000.0 1904200.0 2176730.0 1945590.0 2109720.0 2032170.0 2224380.0 2171610.0 2027720.0 2635620.0 2262670.0 True False 1893947.9987765092 2249181.142188927 2219512.160628564 2376810.335685537 2290954.8038847293 2070613.8462272969 2066560.9279441915 2179038.762953527 1986106.7664986057 2118264.4634307525 0.8941036548897492 1.0618037459525433 1.047797477107193 1.1220555207899028 1.0815244476953962 0.9775048781556386 0.9755915579101857 1.0286906099648878 0.937610388497901 1.0 21.014451289089543 2.7238360141425053 24.43390585009371 0.9885170061678432 1.047417294307117 0.18578780148424212 0.05922157271458942 1037.9215601373432 1722316.5555927404 0.019411990643526816 0.018377824957790743 529.4634852888537 -2.7238360141425053 0.058900288139273727 QQGNEPSQILSLTGDRVPLHCVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQGNEPSQILSLTGDRVPLHCVDR 24 1 Q8NFH3 Q8NFH3 NUP43 Nucleoporin Nup43 0 126.27 5.5838e-05 98792000.0 51483.0 57354.0 52284.0 68138.0 56066.0 54932.0 56770.0 45364.0 59624.0 67560.0 False True 51205.82124829901 59262.99321877483 59645.13273932523 76764.26381365348 63205.67277078262 51134.68013601897 54023.818217539825 48749.29203372448 44930.46412066718 63248.26295897395 0.8096004356912334 0.9369900523152047 0.9430319497946387 1.2136975819153595 0.9993266188477151 0.808475644132512 0.8541549710635125 0.7707609624843887 0.7103825784086967 1.0 15.94873823793527 2.7374279917527464 24.079106795726013 0.81330317596583 0.9889810897696433 0.2909777522191802 0.11685320390002885 72.07962658475853 1532366.42865297 0.037798140941756896 0.03752391195215481 546.2959637062216 -2.7374279917527464 0.17567791380381326 QQHGEANKENIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QQHGEANKENIR 12 1 O75934 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 0 ;; 159.5 4.2418e-05 530728000.0 371870.0 376690.0 352530.0 348660.0 346320.0 417240.0 421550.0 366840.0 536840.0 437520.0 False True 369867.89323864144 389227.8989360868 402163.15975430957 392800.32025108434 390421.7992005395 388397.1808773134 401158.0160226162 394215.4635757755 404542.9752874512 409597.0990202829 0.9030041817271901 0.9502701553968099 0.9818506056713912 0.9589919488947191 0.9531849716084198 0.9482420207719301 0.9793966241024358 0.9624469131219464 0.9876607433379759 1.0 18.643845971894176 QQHNQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQHNQLK 7 0 Q15276-2;Q15276 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 81.297 0.027584 41120000.0 52484.0 44798.0 43544.0 39871.0 40439.0 34986.0 46871.0 40163.0 64170.0 49641.0 False True 52201.43197552058 46289.074349037146 49674.616708767084 44918.66451193428 45588.666949268314 32567.50016818541 44603.67066539212 43160.167003581606 48356.16333394629 46472.8688802017 1.1232668271478148 0.9960451219046033 1.0688949898233933 0.9665567371733846 0.9809738035925286 0.7007852313171862 0.9597787212227414 0.9287175085928175 1.0405246006782876 1.0 15.504101088127044 3.5288114474157632 2.1187808094159064 0.9222253561073975 1.0585542556406902 0.2795616119975294 0.0905504361645253 0.41040416776687083 3.65009731889789 0.026830477756581587 0.04556231084285474 3379.180943847384 -3.5288114474157632 0.13632889953329264 QQHVIETLIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 QQHVIETLIGK 11 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 141.73 3.7991e-05 1337920000.0 3242580.0 2688240.0 2690360.0 2680260.0 2476940.0 3236700.0 3113350.0 2800520.0 3554400.0 2926350.0 False True 3225122.3095645043 2777716.443324603 3069139.3029716755 3019580.641186754 2792363.6270264043 3012954.5473722517 2962745.3663480324 3009509.023152413 2678465.7465198487 2739587.8376257187 1.1772290215595267 1.0139176430758026 1.1202923523093038 1.1022025283203525 1.0192641348000815 1.0997838820833166 1.0814566065951419 1.0985262023066298 0.9776893114115874 1.0 21.385527429903817 0.646366101472777 0.01225257165652082 5.179973501061297e-08 2.088015402284816 0.31015951279291964 0.04985321725417805 1828.781050953878 10.855231867264303 947.8396229531768 900.4432236042354 4.429616227166224 -0.646366101472777 2.088015350485081 QQLAS(ph)LVGTMLAYSLTYR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQLASLVGTMLAYSLTYR 18 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;Q8WVB6-3 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 QQLAS(0.5)LVGT(0.5)MLAYSLTYR 52.172 0.0866 459430000.0 154020.0 408850.0 397120.0 507260.0 467400.0 291440.0 300770.0 219550.0 102730.0 307000.0 True False 153190.77343323056 422458.3250949559 453031.04417108215 571479.0639894599 526920.6195031527 271293.4387759661 286220.60604702245 235933.93585231053 77413.56801147417 287406.9971640767 0.5330098951828095 1.4698957550215113 1.5762700582841167 1.9883964887020837 1.833360442516787 0.9439347039316806 0.9958720868706722 0.8209053300035666 0.26935171646944917 1.0 18.13273566027879 2.578345359696213 4.907307914463742 0.7921884003622058 1.5113377581326568 0.4095403397244587 0.40709202443484727 0.23534201584612668 8.951559855439717 0.140648392144006 0.13114864872665333 378.74364955323585 -2.578345359696213 0.719149357770451 QQLEELAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQLEELAR 8 0 A0A2R8Y430;P48637;P48637-2;A0A2R8YF34;A0A2R8Y790;A0A2R8Y446;A0A0S2Z4J7;A0A2R8Y2F2;A0A2R8Y2X9;A0A2R8Y6Y6;A0A2R8Y4V9 A0A2R8Y430 GSS Glutathione synthetase 0 80.455 0.054927 0.0 129280.0 144340.0 151550.0 127840.0 116450.0 131000.0 154900.0 127400.0 189930.0 146230.0 False True 128583.97084435831 149144.26964462743 172886.92270378603 144024.5308922696 131279.21724677412 121944.27834083041 147406.89522453636 136907.23492409178 143124.29643161 136897.47620619845 0.9392720334060934 1.089459599824781 1.2628934257588458 1.0520612569609114 0.9589600983515433 0.8907708288000492 1.0767685373725104 1.000071284863416 1.0454852813797135 1.0 17.062736324258598 3.477026495974957 24.69600267635426 0.9972204538340279 1.1066074443733558 0.22006778403312477 0.08613310517595342 4.030191834385592 1050004.2341804847 0.02435128281295612 0.03331563899931208 2999.3455011862 -3.477026495974957 0.10938699053932788 QQLS(ph)AEELDAQLDAYNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQLSAEELDAQLDAYNAR 18 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 1 QQLS(1)AEELDAQLDAYNAR 101.05 0.00077261 55073000.0 58817.0 62834.0 63314.0 80252.0 70168.0 71449.0 61122.0 61889.0 74686.0 67281.0 True False 58500.335807183044 64925.39170604487 72228.06086484653 90411.89497157713 79103.47888168012 66509.89880285482 58165.29535128538 66507.47144597421 56280.636041126905 62987.06897783793 0.9287673923637636 1.0307733437936117 1.1467125242843106 1.4354040668790073 1.2558685483446255 1.0559294134841613 0.9234481981015961 1.0558908760999013 0.8935268294660498 1.0 15.94276805837832 2.503995875055473 6.218674384642062 0.9806716326402225 1.166517058263225 0.3186710416711368 0.13136616423086434 0.24798724602723568 33.11264679904235 0.04829698295853548 0.04387725638186745 319.15075419039886 -2.503995875055473 0.18584542562300244 QQLS(ph)EEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QQLSEEEK 8 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 QQLS(1)EEEK;QQLS(1)EEEK 117.79 0.0021092 617350000.0 1003790.0 750770.0 677640.0 623270.0 687790.0 813520.0 781850.0 794940.0 1063570.0 827760.0 True False 998385.7061715528 775758.925599951 773045.8218475318 702175.9180946866 775375.9796492808 757283.2772200935 744028.928542954 854262.4594235274 801467.4246078428 774931.6481190096 1.2883532484380176 1.0010675489676404 0.9975664611504057 0.9061133582543405 1.000573381576749 0.9772258999335568 0.9601220060490939 1.1023713659095964 1.034242731669617 1.0 19.563709539315894 4.738558143991109 10.139827638073212 1.0004160977157452 1.2889964040516158 0.7706983462824604 0.04754139466649673 0.037049937850811815 135.10021390182868 0.01263619873291213 0.07320519464548143 54771.9425544629 -4.738558143991109 0.2885803063358705 QQLS(ph)PSPGQEAGILPETEK ddPTM_BT-474_Trastuzumab_2h_R1 4 QQLSPSPGQEAGILPETEK 19 0 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 QQLS(0.986)PS(0.014)PGQEAGILPETEK;QQLS(0.991)PS(0.009)PGQEAGILPETEK;QQLS(0.999)PS(0.001)PGQEAGILPETEK;QQLS(1)PSPGQEAGILPETEK 278.21 1.6232999999999994e-39 656960000.0 1189670.0 1027710.0 1033690.0 932850.0 992910.0 1188770.0 1100680.0 1064840.0 1334400.0 1115210.0 True False 1183264.948904764 1061916.706086187 1179224.5670054532 1050948.7143527349 1119351.203061351 1106593.1279635779 1047435.9033940763 1144303.7679479592 1005555.0000439147 1044036.3430206841 1.1333560913035394 1.0171261883602347 1.1294861284173618 1.0066208148578921 1.0721381593123094 1.059918206258893 1.003256170530957 1.0960382515393803 0.9631417591599998 1.0 19.993740502480172 7.9999999830817305 0.10649268483590281 0.9714452344909581 1.3378960891529286 0.28616640963536133 0.04714003323067957 163.74976584403348 1.222442833917423 0.4395140212097365 8.801609727592608 99999996.10442457 -7.9999999830817305 0.36645085466197047 QQLSAEELDAQLDAYNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQLSAEELDAQLDAYNAR 18 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 ; 305.14 1.2988999999999997e-49 415660000.0 206377.0 217160.0 211670.0 213685.0 229160.0 248860.0 221057.0 183677.0 255910.0 231053.0 False True 205265.88916264032 224388.03932400796 241471.296131378 240737.4990903831 258342.16766226507 231656.89395342782 210363.6283902537 197383.91043290723 192844.409518314 216306.99972557454 0.9489562955570466 1.0373591220288096 1.1163360244362366 1.1129436374957962 1.1943310572011998 1.0709634651089768 0.9725234442581094 0.9125174436487272 0.8915310635484419 1.0 17.722720826310805 2.161509381314303 3.321448773465663 0.928389391455967 1.0875321867370884 0.5209126847985179 0.06442564561469263 0.19097954540377923 4.218721320613609 0.028273510047428226 0.019905533000149425 145.04721060126602 -2.161509381314303 0.1591427952811214 QQLVASHLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QQLVASHLEK 10 0 Q13561;Q13561-3;Q13561-2;H0YI98;F8W1I6;F8VW18;F8VX93 Q13561 DCTN2 Dynactin subunit 2 0 ; 90.653 0.010684 540328000.0 701070.0 694510.0 679160.0 574240.0 550920.0 680720.0 615940.0 581410.0 807420.0 752620.0 False True 697295.5170162 717626.3455098398 774779.8246354549 646938.725121847 621076.3964413297 633663.4286425184 586144.6290807026 624797.7665401582 608442.1598736929 704587.1472496004 0.9896512017542987 1.018506154009676 1.0996224209593604 0.918181274874531 0.8814756256422501 0.8993400335445556 0.8318979864573949 0.8867572577488747 0.8635442219586102 1.0 19.426418632539082 3.58056005853133 5.3283729225193746 0.8853216516143618 1.0333247021683605 0.6332622109117289 0.048301671074169925 0.12614407549610987 5.2834711147361 0.012258417770058783 0.019119138980538034 3806.7999815215653 -3.58056005853133 0.14800305055399865 QQNDQNRPSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QQNDQNRPSEK 11 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 0 ; 89.959 0.010802 67053000.0 169186.0 169446.0 140477.0 147652.0 166072.0 197371.0 193423.0 189211.0 234425.0 206117.0 False True 168275.1213743315 175085.90767772996 160254.94055202726 166344.72806089954 187220.28481413698 183727.20733135895 184066.3905423852 203330.88561398987 176654.09988406353 192962.43659435812 0.8720615490986786 0.9073574669135845 0.8304981185996945 0.8620575641392122 0.9702421264907004 0.9521397561826331 0.9538975242592214 1.0537329917813387 0.9154843968695437 1.0 17.55796050424393 3.2117881712307272 5.835518429662206 0.9803740444086362 0.8678453197186409 0.6491841419353843 0.038136329879228104 0.10636601711337836 10.61970487714779 0.011400558933009678 0.014118441880599747 1628.5015311395312 -3.2117881712307272 -0.11252872468999531 QQPGPSEHIER ddPTM_BT-474_Trastuzumab_2h_R1 3 QQPGPSEHIER 11 0 P50552;K7EQD0 P50552 VASP Vasodilator-stimulated phosphoprotein 0 ;; 191.29 5.6641e-06 1114610000.0 404697.0 484264.0 532690.0 484663.0 489394.0 503305.0 506980.0 448499.0 500662.0 522607.0 False True 402518.15631806414 500382.43449623056 607688.1217755176 546021.2861063825 551715.4250345016 468512.7100025316 482455.4405483235 481968.2728117762 377280.55862708756 489253.7738336372 0.8227185518960022 1.0227461927894654 1.2420714039952445 1.116028767295821 1.1276671832522307 0.9576067371569049 0.9861046891226938 0.9851089528348977 0.7711346928830757 1.0 18.900223453485264 2.659254144475552 6.5520819215121024 0.9457865490893124 1.0761683899025105 0.22446521893144056 0.1164318397837708 0.3962301966052208 27.264638742292867 0.03935433289567826 0.037092912080252616 456.30386196554855 -2.659254144475552 0.13038184081319815 QQPPEPEWIGDGES(ph)TSPSDKVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q5STZ8;Q8NE71;Q8NE71-2;A0A0G2JIC2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 QQPPEPEWIGDGES(0.336)T(0.336)S(0.328)PSDKVVK 168.65 5.6939e-12 125850000.0 64054.0 64753.0 70412.0 57977.0 53166.0 92138.0 79187.0 69596.0 130960.0 86953.0 True False 63709.14038106844 66908.26446098485 80325.39756792448 65316.88225548428 59936.37496042925 85768.71692952223 75356.42228628384 74789.60692132724 98686.66277409383 81403.58509579126 0.7826331027816408 0.8219326505368392 0.9867550363218274 0.8023833616003885 0.7362866744738505 1.0536233364733791 0.9257138023787103 0.918750775329108 1.2123134706900782 1.0 16.312804713181304 1.9914265361409964 0.8851932742025937 1.066251500070897 0.8400413957639407 0.4257018848357138 0.10448661144468781 0.6186815718444763 0.8961330209268564 0.08788890557471622 0.042854664540742014 98.04524501079486 -1.9914265361409964 -0.22621010430695632 QQPPEPEWIGDGEST(ph)SPSDKVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q5STZ8;Q8NE71;Q8NE71-2;A0A0G2JIC2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 QQPPEPEWIGDGES(0.206)T(0.395)S(0.395)PS(0.005)DKVVK 110.01 0.001775 480800000.0 76204.0 63212.0 69986.0 59902.0 58803.0 79237.0 83608.0 65300.0 126930.0 95222.0 True False 75793.72613106032 65315.97320753908 79839.4204707829 67485.58705810955 66291.21349731267 73759.53269383479 79563.56162642376 70173.01758668115 95649.80227486063 89144.85043634436 0.8502311211479604 0.7326948543615454 0.895614497977018 0.7570329270595273 0.7436348052953347 0.8274121537340424 0.8925199968027059 0.7871797108099875 1.0729705844664719 1.0 16.4438638407253 1.2405919931993983 24.999327756113573 1.0364853618976104 0.8104655797540914 0.7153775975478158 0.05694387622618522 24.948710236894225 307067.1271557224 0.04114733850502166 0.013329499111079583 17.401712658544863 -1.2405919931993983 -0.22601978214351903 QQPPEPEWIGDGESTS(ph)PSDKVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q5STZ8;Q8NE71;Q8NE71-2;A0A0G2JIC2 Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 QQPPEPEWIGDGES(0.002)T(0.027)S(0.965)PS(0.006)DKVVK 199.04 1.6245e-24 493280000.0 293740.0 263130.0 244770.0 243650.0 227410.0 305370.0 346690.0 307310.0 492590.0 354300.0 True False 292158.53647758235 271888.1229845558 279231.48842102056 274496.0650180029 256369.31553532768 284260.49066365877 329919.2802155874 330243.032688561 371197.7948678296 331688.27066850924 0.8808226347249009 0.8197097908725328 0.8418491490767419 0.8275724205283566 0.7729224642723177 0.8570109823019638 0.9946667078418043 0.9956427823720284 1.1191164345959232 1.0 18.33946847013956 2.1835767758805336 2.3809883774296017 1.0351047128205728 0.8265813396384437 0.8505211190470067 0.04024703316028366 0.10683596823990214 1.2213215258039336 0.01859500777515112 0.012218788088369972 152.6078155633786 -2.1835767758805336 -0.2085233731821291 QQPPLGPS(ph)SSLLSLPGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 QQPPLGPS(0.333)S(0.333)S(0.333)LLS(0.001)LPGLK 99.392 0.0010958 360080000.0 311570.0 128300.0 105070.0 147070.0 103500.0 139470.0 106020.0 132480.0 272360.0 178660.0 True False 309892.5417386814 132570.3879410122 119862.94271518839 165689.04692057328 116680.11150743773 129828.76717706554 100891.40756426945 142366.33031980894 205240.52743702076 167257.76584147842 1.8527841752495227 0.7926112564881332 0.7166360384652672 0.9906209501662725 0.6976065411397604 0.7762196662372802 0.603209106953462 0.8511791940036985 1.2270911691570794 1.0 17.351713671736363 4.739791625157074 24.950262750253973 0.828804885438801 1.8527845142047454 0.750323329471851 0.173028406729324 47.72036661444305 967091.4219684653 0.04029398049443888 0.25074598528650455 54927.726694728735 -4.739791625157074 1.0239796287659444 QQPPLGPSS(ph)SLLSLPGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 QQPPLGPS(0.111)S(0.444)S(0.444)LLSLPGLK 148.36 7.333899999999999e-08 197810000.0 295580.0 102200.0 119560.0 143100.0 107500.0 133990.0 98155.0 151290.0 237200.0 173480.0 True False 293988.6301220249 105601.66521879529 136393.00876585054 161216.44532762663 121189.48779758012 124727.58667853328 93406.86766148722 162580.02803505363 178745.23831715834 162408.35787629976 1.8101816554659387 0.6502230956563704 0.8398152074767967 0.9926610147146432 0.7462022852905484 0.7679874872790322 0.5751358420398023 1.0010570278586564 1.1005913775281304 1.0 17.30926635299699 4.745676708423481 24.989121560223563 0.8450891834173981 1.810182106622126 0.7589168936052826 0.1618582475591211 403.67680656318026 1417530.7142642504 0.03891917623499197 0.39517579564359673 55677.11306554471 -4.745676708423481 0.9650929232047278 QQPTTEGGDGETKPSQGPADGSRPEPQRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQPTTEGGDGETKPSQGPADGSRPEPQRPR 30 3 Q9Y2T7;I3L2D6 Q9Y2T7 YBX2 Y-box-binding protein 2 0 94.606 0.00035878 108730000.0 54014.0 46825.0 48386.0 38811.0 46535.0 58924.0 57403.0 52777.0 87735.0 64645.0 False True 53723.194625519536 48383.54181868975 55198.32822134861 43724.46862061851 52460.95641544554 54850.72257217623 54626.19758924506 56715.48773617578 66113.88483876863 60519.300754631025 0.8877034922021725 0.799472915506007 0.9120780896848805 0.7224880009419581 0.8668467044611573 0.9063343741290496 0.9026244009447677 0.9371471089218728 1.0924429729751877 1.0 15.885107698173927 1.7400735868446304 1.129189548808092 1.0406410283637162 0.8386782232721446 0.6236361726078421 0.05865121795768301 0.2971857814821462 0.7077792257694686 0.04793386790004626 0.018916463217450507 54.963399593670005 -1.7400735868446304 -0.2019628050915716 QQQLEEEAAKPPEPEKPVS(ph)PPPIESK ddPTM_BT-474_Trastuzumab_2h_R1 3 QQQLEEEAAKPPEPEKPVSPPPIESK 26 2 C9J0Q5;C9JE98;C9J330;H7C1Y3;H0YGK8;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 QQQLEEEAAKPPEPEKPVS(1)PPPIESK;QQQLEEEAAKPPEPEKPVS(1)PPPIESK;QQQLEEEAAKPPEPEKPVS(1)PPPIESK 200.03 2.8701e-25 3116450000.0 2738940.0 1415720.0 1310790.0 1236560.0 1089410.0 2156770.0 2260250.0 2064180.0 3405410.0 1954410.0 True False 2724193.8513648435 1462841.384379188 1495337.838409076 1393108.3692126474 1228139.9060610398 2007677.566390476 2150913.072506508 2218219.5932936543 2566192.335656134 1829677.8805454175 1.4888925970689308 0.7995076072861101 0.8172683587142254 0.7613954259518998 0.6712328542196387 1.097284712100251 1.175569260237945 1.212355254921929 1.4025377706873547 1.0 20.803158250049403 2.515373172533638 6.042290331872848 1.205591473238011 0.8869918751002438 0.26528073740481883 0.22789643991993289 0.247177966433097 25.498514136702173 0.07523304400662757 0.06907115652716973 327.6220870170128 -2.515373172533638 -0.3185995981377673 QQQLEEEAAKPPEPEKPVS(ph)PPPVEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQQLEEEAAKPPEPEKPVSPPPVEQK 26 2 O75376;O75376-2;A0A088AWL3;E7EVU5;E7EW50;J3KS51;O75376-3 O75376 NCOR1 Nuclear receptor corepressor 1 1 QQQLEEEAAKPPEPEKPVS(1)PPPVEQK 160.26 9.6288e-12 994540000.0 1225600.0 563400.0 572850.0 461920.0 452760.0 928630.0 897870.0 831030.0 1456100.0 820080.0 True False 1219001.50577696 582152.4284175073 653502.3006985398 520399.0246382753 510416.30228123197 864435.9938598862 854436.5979035139 893045.6784848347 1097263.6657403633 767741.7922941888 1.5877753666819459 0.758265909529169 0.85120063445514 0.6778307887645448 0.6648280807483345 1.1259462524200394 1.112921826686367 1.1632109746379824 1.4292092429428487 1.0 19.55026165828431 2.5616426667514713 7.856140913609097 1.176494662725236 0.8837512744721244 0.19105884556055974 0.2649654519269643 0.46878743454089694 39.215771382188954 0.08556393838842871 0.08047272349367209 364.4539543809356 -2.5616426667514713 -0.2927433882531115 QQQLEQEQFHAFEEMIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQQLEQEQFHAFEEMIR 17 0 O95630;F5H5B9;C9JK83;O95630-2 O95630 STAMBP STAM-binding protein 0 209.73 4.0147e-12 57974000.0 46479.0 57469.0 46405.0 55411.0 53018.0 55598.0 48951.0 41895.0 54364.0 52014.0 False True 46228.762228302345 59381.82092425591 52938.42064050928 62426.026918582145 59769.528037694 51754.641123614376 46583.0531190205 45021.417638499406 40966.720640278254 48694.42198857417 0.9493646364495224 1.2194789156382115 1.0871557455375676 1.2819954395029067 1.227440959289311 1.0628453734548542 0.9566404367619542 0.9245703265368544 0.8413021238837342 1.0 15.571468898667684 2.342819534675222 2.6701146369821323 0.9201054048195998 1.1597532061790428 0.5582771892176395 0.09303495057268549 0.19171247793480742 2.7933982020034884 0.03644259337317717 0.028235282938164952 220.20112562780622 -2.342819534675222 0.23964780135944297 QQQQQQGEDGS(ph)PQAHR ddPTM_BT-474_Trastuzumab_2h_R1 7 QQQQQQGEDGSPQAHR 16 0 A0A087WUX9;E9PEG3;A0A087WZ66;F5GZG9;P10275-3;P10275-4;P10275 A0A087WUX9 AR Androgen receptor 1 QQQQQQGEDGS(1)PQAHR;QQQQQQGEDGS(1)PQAHR;QQQQQQGEDGS(1)PQAHR;QQQQQQGEDGS(1)PQAHR;QQQQQQGEDGS(1)PQAHR;QQQQQQGEDGS(1)PQAHR;QQQQQQGEDGS(1)PQAHR 276.05 1.7869e-35 910751700.0 572845.5 545662.2 569785.6 601363.7 591007.0 604099.1 583047.6 508502.7 517826.1 560820.9 True False 569761.3634771188 563824.236467234 650006.4598147824 677496.2827607911 666268.2382770656 562339.1511133215 554843.3601298727 546449.7535983903 390214.79616924457 525028.8300190712 1.0852001469260701 1.073891954555626 1.2380395564014484 1.2903982486755663 1.2690126716524575 1.0710633758776542 1.056786462773327 1.0407995187207928 0.7432254646950918 1.0 19.00203711966045 1.8296492097379413 1.3426223016698564 0.8925905152394675 1.1840422533900532 0.568741212758733 0.09884164330936282 0.3200553472307106 1.0802315600354289 0.08004424083830104 0.033079398953194596 67.55371071425162 -1.8296492097379413 0.29145173815058567 QQQQQQQHQQPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQQQQQQHQQPNR 13 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JH18;Q6Y7W6-4;Q6Y7W6-5 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 130.56 0.00014061 142890000.0 30980.0 39053.0 34471.0 42187.0 40364.0 38146.0 30008.0 30999.0 37224.0 39956.0 False True 30813.20712220157 40352.85549696296 39324.217172696815 47527.869874469434 45504.116143828156 35509.056806025284 28556.398398307836 33312.30278973249 28050.643976045125 37405.97387194739 0.8237509662944489 1.0787810427046678 1.051281736636939 1.2705957085136328 1.2164932879331867 0.949288392479344 0.7634181239623788 0.8905610345494853 0.749897438095622 1.0 15.190981071779891 2.4999450741265887 6.396788713202833 0.8450860860900604 1.0952093083080354 0.4348738912859358 0.127757782318113 0.15919218640952545 24.867191269545863 0.0434630879863214 0.03932189383737252 316.1877747467016 -2.4999450741265887 0.250123222217975 QQQQQQQQHSENKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQQQQQQQHSENKR 14 1 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 0 ; 98.531 0.0016494 92075000.0 16174.9 12112.6 15384.8 15206.3 14597.0 17813.9 17501.5 16071.1 19788.6 19806.3 False True 16087.816135600331 12515.760568778684 17550.846112921172 17131.416020862926 16455.841426802588 16582.467022410045 16654.88558277741 17270.407089392236 14911.96468365482 18542.24497697344 0.867630438254854 0.6749862589088481 0.9465329648441474 0.9239127215791537 0.8874783742334416 0.894307406843285 0.8982130051382755 0.9314086352995212 0.804215708624988 1.0 14.178528306418551 4.2228909085605055 24.99999955522114 0.907991543952794 0.7713083068228512 0.4322823972884692 0.06386067684185075 172.86546100669648 275796.7032600558 0.014440667695768464 0.031365132550344385 16706.709018949114 -4.2228909085605055 -0.1366832371299428 QQQS(ph)PPKGK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQQSPPKGK 9 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 QQQS(1)PPKGK 74.962 0.023987 251450000.0 514280.0 339830.0 342570.0 348530.0 364480.0 386240.0 499020.0 459880.0 640270.0 475710.0 True False 511511.1736218792 351141.0361184271 390800.8783281815 392653.86226441385 410894.3675577864 359540.13791116205 474880.49615847704 494198.58082332276 482484.03767844517 445349.7805241784 1.1485605157811654 0.7884612308669665 0.877514473832697 0.8816752122393745 0.9226329180496331 0.8073207928563071 1.0663090382564933 1.109686368861907 1.0833822284824293 1.0 18.764579357498462 2.170335235357091 8.714331792205583 1.07842986498037 0.8978085288931744 0.39922998359756945 0.09569361923496138 0.25405718222913365 29.54450068672664 0.033896891048970965 0.025044195234957517 148.0250564441816 -2.170335235357091 -0.18062133608719566 QQS(ph)PQEPK ddPTM_BT-474_Trastuzumab_2h_R1 12 QQSPQEPK 8 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK 180.66 0.00024957 20799669000.0 13974740.0 11289140.0 10576520.0 10379060.0 10372480.0 11826990.0 13159330.0 11640400.0 15357460.0 11642890.0 True False 13899501.552579574 11664892.200470764 12065602.08324015 11693047.931810994 11693353.845494365 11009418.019039826 12522762.93437763 12509065.756753502 11572819.762420854 10899830.792220378 1.2752034244880366 1.0701902096311844 1.10695315489226 1.072773344349232 1.072801410260456 1.0100540300953722 1.1488951684750555 1.1476385271670178 1.0617430658355553 1.0 23.377802403147744 4.741532994211778 24.681059506106386 1.0861225783368054 1.2752035074631203 0.6055905566013067 0.047503582862539404 173.77546726489524 1442852.67336461 0.01169672304327725 0.08314121732080743 55148.40981292532 -4.741532994211778 0.1890809291263149 QQS(ph)VESLAEEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 QQSVESLAEEVK 12 0 Q8WXH0;Q8WXH0-2;G3V5X4;A0A0A0MRE3 Q8WXH0 SYNE2 Nesprin-2 1 QQS(1)VESLAEEVK;QQS(0.766)VES(0.234)LAEEVK;QQS(0.999)VES(0.001)LAEEVK 270.07 6.5337e-23 894740000.0 1005040.0 925530.0 855630.0 844600.0 751180.0 1032090.0 1177680.0 975560.0 1156510.0 981200.0 True False 999628.9763104419 956335.7065552993 976095.266730718 951526.2734012103 846838.3204073147 960744.0475785299 1120711.1192255132 1048361.2409933052 871503.6069400379 918578.9759524164 1.0882341121230101 1.0411034125440715 1.0626144210612556 1.035867680745287 0.9219003946060071 1.0459025001986304 1.220048736760515 1.1412859083850964 0.948751963364316 1.0 19.80904423857885 2.4569232493524584 24.99893554786509 1.1037156412612372 1.0278273923673789 0.03348191833936698 0.08126261548263446 450.89568422819553 558067.661061913 0.0286598897053704 0.023981312669823517 286.36718430740495 -2.4569232493524584 -0.07588824889385837 QQSELQSQVR ddPTM_BT-474_Trastuzumab_2h_R1 6 QQSELQSQVR 10 0 Q14847;Q14847-2;C9J9W2 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;; 291.15 9.454599999999999e-32 2270880000.0 736014.0 802579.0 897691.0 774034.0 630736.0 751975.0 810679.0 653887.0 920651.0 737802.0 False True 732051.3824028425 829292.3568457491 1024078.0899299524 872026.6250365059 711056.4909348332 699992.7382087467 771463.3596754804 702683.3683109069 693768.897141359 690714.844695928 1.0598460247732362 1.200629120995404 1.4826351247464216 1.2624987456587766 1.0294501361815382 1.0134323065213735 1.116905718184036 1.0173277347473946 1.0044215821751674 1.0 19.39773070451326 3.239740689334576 24.593589083906988 1.035305551781404 1.2642922846191784 0.5303324447920701 0.10159867212519763 20.48528049893491 426918.1653329419 0.02994779237599975 0.03838052001659528 1736.763523873176 -3.239740689334576 0.22898673283777438 QQSFCAKPPPSPLS(ph)PVPSVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQSFCAKPPPSPLSPVPSVVK 21 1 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 QQSFCAKPPPSPLS(0.999)PVPS(0.001)VVK 159.56 1.3532e-11 277030000.0 345540.0 316030.0 311770.0 292970.0 327520.0 354660.0 334080.0 309060.0 415050.0 361770.0 True False 343679.65103310294 326548.8675058306 355664.50604658085 330059.9719611095 369227.73063686973 330143.1889798389 317919.2740904653 332123.6265748806 312766.48888506147 338681.5288731204 1.0147575870955012 0.9641767845809064 1.0501443855824295 0.9745437640467226 1.0901915196420198 0.9747894728074168 0.9386968198362149 0.9806369649975906 0.9234825705603584 1.0 18.36956978122811 2.4954899173693548 24.95210183445382 0.9601797542280386 1.0167644039847936 0.34310078520104403 0.03856187385966864 804.5326688818927 1092881.9598848675 0.011807171314768211 0.01094148243246896 312.9607813385283 -2.4954899173693548 0.056584649756755034 QQSHFAMMHGGTGFAGIDS(ph)SSPEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QQSHFAMMHGGTGFAGIDS(0.665)S(0.223)S(0.112)PEVK 104.07 0.015078 548080000.0 343590.0 261280.0 254880.0 253960.0 265890.0 347890.0 363720.0 362820.0 528450.0 370820.0 True False 341740.14961643785 269976.54685290495 290764.88854332495 286111.30996089475 299749.51544649876 323841.1831449726 346125.4740546697 389895.47076262935 398220.57836721087 347153.95012502524 0.9844051882266135 0.7776853662637992 0.8375675645880102 0.8241626225421131 0.8634483788490551 0.9328460270388492 0.9970374064014391 1.123119787697104 1.1471008128347504 1.0 18.405216061814773 2.214271999414275 1.6980153075972553 1.1022892690074158 0.8502868843444851 0.7215583605471356 0.06258094816954289 0.1703788766957114 0.9717013229253331 0.032303410643974545 0.019548150358964986 163.78419836467992 -2.214271999414275 -0.2520023846629307 QQSHFAMMHGGTGFAGIDSS(ph)SPEVK ddPTM_BT-474_Trastuzumab_2h_R1 3 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QQSHFAMMHGGTGFAGIDS(0.114)S(0.486)S(0.4)PEVK;QQSHFAMMHGGTGFAGIDS(0.001)S(0.577)S(0.421)PEVK;QQSHFAMMHGGTGFAGIDS(0.021)S(0.55)S(0.428)PEVK 122.04 0.00020104 1486850000.0 839911.0 702208.0 705120.0 629016.0 694180.0 950165.0 802880.0 672941.0 1311230.0 916057.0 True False 835389.0124988846 725580.5687862997 804394.7669870899 708649.3611055372 782579.708272784 884482.3299978252 764041.6271005536 723159.2745451584 988094.9360818192 857593.4579841447 0.974108424827011 0.8460658859173741 0.9379674710647824 0.8263231890449412 0.9125299417655451 1.031353867923486 0.8909135441593811 0.8432425268786603 1.15217172762072 1.0 19.70993437490387 1.24157653072204 24.99999991776326 1.0760858785587233 0.9044684033071726 0.4894498120185423 0.06867668361497653 57.773927880337716 478942.6122154343 0.049455515810312385 0.016313144727148194 17.441206767163656 -1.24157653072204 -0.1716174752515507 QQSHFAMMHGGTGFAGIDSSS(ph)PEVK ddPTM_BT-474_Trastuzumab_2h_R1 6 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QQSHFAMMHGGTGFAGIDS(0.001)S(0.024)S(0.976)PEVK;QQSHFAMMHGGTGFAGIDSS(0.127)S(0.873)PEVK;QQSHFAMMHGGTGFAGIDSS(0.074)S(0.926)PEVK;QQSHFAMMHGGTGFAGIDSS(0.018)S(0.981)PEVK;QQSHFAMMHGGTGFAGIDS(0.001)S(0.206)S(0.793)PEVK;QQSHFAMMHGGTGFAGIDS(0.034)S(0.282)S(0.684)PEVK 150.91 2.6523000000000005e-07 5772697000.0 2530005.0 1810589.0 1736828.0 1919992.0 1837587.0 2642616.0 2260851.0 1899108.0 3482231.0 2613162.0 True False 2516383.734189981 1870853.3603408376 1981358.2856203942 2163062.7903387877 2071592.8122185296 2459938.175968944 2151484.999840463 2040829.0824350265 2624081.8295547967 2446387.763919453 1.0286119687577184 0.7647411370891876 0.8099117870202158 0.8841864001450287 0.8467965883297054 1.0055389469524576 0.8794537937000981 0.8342214233304269 1.072635282213255 1.0 21.222221665235892 1.2373059079045452 24.99999952392664 1.036317692114544 0.8763148021237994 0.3797810389530567 0.07880628897465637 32.415713238349525 645752.3812950383 0.06132482956299414 0.01856253684311196 17.27053964163209 -1.2373059079045452 -0.16000288999074463 QQSIAGSADSKPIDVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQSIAGSADSKPIDVSR 17 1 Q12904;Q12904-2;A0A5F9ZHC5 Q12904 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 148.44 3.3020000000000003e-07 180100000.0 177920.0 153080.0 125010.0 142870.0 124230.0 160170.0 134590.0 137060.0 178940.0 176250.0 False True 176962.09848877037 158175.17526118588 142610.32139360128 160957.32735120892 140049.9541311013 149097.82489962425 128079.36751627081 147288.11317657772 134842.63467315485 165001.5741047835 1.0724873350383397 0.9586282804837817 0.864296732727151 0.9754896474441734 0.8487795034134837 0.9036145607007382 0.7762311857396863 0.8926467154976538 0.8172202926229276 1.0 17.332120262194767 7.99999999917552 0.6688959128153283 0.8686939934978367 21.785993558894404 0.4428499947312442 0.06413510763692055 195.32956574251702 1.1650639489014252 0.022630363059631592 6075.380347466566 99999999.81015645 -7.99999999917552 20.91729956539657 QQSNEHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQSNEHLR 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ; 174.02 0.00027436 306810000.0 295470.0 345050.0 290970.0 241760.0 240310.0 260940.0 257980.0 251680.0 293560.0 270090.0 False True 293879.2223498031 356534.78066287 331936.0468434216 272366.7912117885 270912.0540710368 242901.83198668866 245500.52182069654 270461.63960514456 221216.0715024664 252852.62496431728 1.1622549791257872 1.4100497501783278 1.3127648838538442 1.0771760477085222 1.0714227471803708 0.9606458782896445 0.9709233663496344 1.069641415205052 0.8748814513342883 1.0 17.947937230174485 3.5828431439090433 2.3557590257797814 0.9961104699313036 1.310019462333695 0.7521446715650966 0.07768370551376672 0.13828876068119358 1.501276327191749 0.02165469505771357 0.03726346290854895 3826.8650174896657 -3.5828431439090433 0.31390899240239134 QQSSSSKGDS(ph)PELKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QQSSSSKGDSPELKPR 16 2 Q5VWQ8;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8-5;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4 Q5VWQ8 DAB2IP Disabled homolog 2-interacting protein 1 QQS(0.004)S(0.003)S(0.007)S(0.004)KGDS(0.982)PELKPR 103.58 0.00074509 308910000.0 461950.0 344690.0 314630.0 281540.0 295840.0 464400.0 507740.0 455550.0 659880.0 476790.0 True False 459462.9125274694 356162.7982804946 358927.1691870148 317182.93513305363 333513.4704189405 432297.1210800116 483178.67644484225 489545.45423602825 497261.41593898257 446360.85399954434 1.0293530635819117 0.797925703137171 0.8041188333853784 0.7105975631397493 0.7471835117944302 0.9684924589745787 1.0824844340972057 1.0967481799748684 1.1140345563087621 1.0 18.767850982300313 2.4992693921742837 3.447543873762837 1.0814597341713055 0.8108891362444139 0.6717762258109738 0.0841546121443582 0.13729484030773548 3.4207692096325477 0.03055618139443769 0.026861685466458264 315.69622748105087 -2.4992693921742837 -0.27057059792689153 QQTDMAVNWAGGLHHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 QQTDMAVNWAGGLHHAK 17 0 Q92769;Q92769-3;H3BM24 Q92769 HDAC2 Histone deacetylase 2 0 81.656 0.0051092 745470000.0 633490.0 629880.0 481690.0 448150.0 475850.0 785870.0 624570.0 523030.0 1060400.0 664430.0 False True 630079.3602273558 650845.1750294995 549507.7650754645 504885.7440501448 536446.6769160791 731544.6566389953 594357.1630109017 562061.1544925252 799078.6286320183 622025.5085528581 1.0129477835936906 1.0463319688346708 0.8834167691191538 0.8116801274352254 0.8624190962266514 1.176068580114879 0.9555189535452865 0.9035982395644191 1.284639645231068 1.0 19.246614219275187 2.7689588359696553 24.979553453646954 1.0362084080528546 0.9217675639909597 0.2358325081119952 0.12150253364718036 1287.8037358341267 1058242.7453745885 0.038848431426111336 0.04120140588734169 587.4336707643357 -2.7689588359696553 -0.11444084406189492 QQTEKPES(ph)EDEWER ddPTM_BT-474_Trastuzumab_2h_R1 2 QQTEKPESEDEWER 14 1 O60231;A0A140T947;A2AB15 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 QQTEKPES(1)EDEWER;QQTEKPES(1)EDEWER 222.42 1.0255999999999998e-11 1274030000.0 1754710.0 1277650.0 1258880.0 1214490.0 1331320.0 1713810.0 1667000.0 1557160.0 2221310.0 1697800.0 True False 1745262.8363266098 1320175.807894267 1436119.361618884 1368244.3094755337 1500855.7106481337 1595338.348574795 1586360.8414415866 1673363.1862982623 1673897.9145290367 1589444.9504402904 1.098032892452901 0.8305891987819813 0.9035351373578973 0.8608315180066588 0.9442640402439753 1.0037078340667742 0.9980596314469089 1.0527971955459834 1.053133620051045 1.0 20.60009161970877 2.668142894563298 2.0832296639366223 1.031688733238328 0.9143003048535273 0.32222032691577907 0.06849199437262932 0.33851187686516665 2.903690029531377 0.024687195738822425 0.023266789398874322 465.73930907258847 -2.668142894563298 -0.11738842838480068 QQVAFYGQTLGQAQAHS(ph)QEQ ddPTM_BT-474_Trastuzumab_2h_R1 3 QQVAFYGQTLGQAQAHSQEQ 20 0 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 1 QQVAFYGQTLGQAQAHS(1)QEQ;QQVAFYGQTLGQAQAHS(1)QEQ;QQVAFYGQTLGQAQAHS(1)QEQ 316.15 1.9949e-66 244510000.0 220956.0 207955.0 202234.0 210410.0 225853.0 245457.0 200158.0 189067.0 263579.0 236637.0 True False 219766.39744651917 214876.65646354776 230706.78935056063 237047.8844261767 254614.0408143896 228489.13533362755 190475.5928621866 203176.13960277307 198623.48722764882 221534.62406487134 0.9920182832556487 0.9699461534311948 1.0414028521474072 1.070026346566768 1.1493193982166494 1.0313924349212327 0.8598005556296707 0.9171304055084301 0.8965798825626755 1.0 17.757172672372583 2.309646451042878 7.258865203486866 0.9104930411781146 1.0459320689339513 0.5424433253301302 0.0555997071735634 0.16943278514556123 14.463936324310206 0.020506541638429694 0.017064713676757864 204.0076490037947 -2.309646451042878 0.13543902775583672 QQVSWEQEFLVGSS(ph)PGGSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QQVSWEQEFLVGSSPGGSGR 20 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 QQVSWEQEFLVGS(0.056)S(0.944)PGGSGR;QQVSWEQEFLVGS(0.011)S(0.987)PGGS(0.003)GR 247.66 3.9116e-30 263520000.0 459430.0 439230.0 410860.0 454660.0 451450.0 511200.0 440110.0 436920.0 496680.0 513520.0 True False 456956.4799274721 453849.5050298585 468705.51674086106 512219.9093826596 508939.48154620995 475861.94723536255 418820.19791653054 469525.1890348051 374279.86917102133 480746.7139534086 0.9505139955501762 0.9440511850775608 0.9749531367286381 1.0654673126529186 1.0586437031695106 0.9898392093460686 0.8711868136806866 0.9766581349535943 0.7785385907126441 1.0 18.874917470786542 2.329396570702061 7.0944184549269345 0.9114120318452241 1.0004300592119761 0.3021097055685642 0.06734992687029727 0.2929434509098806 19.42772236679336 0.023566468546422085 0.01962973203337813 213.49935666170484 -2.329396570702061 0.08901802736675202 QRDELNR ddPTM_BT-474_Trastuzumab_2h_R1 4 QRDELNR 7 1 P43034;I3L495 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 ;;; 173.68 0.00077932 635211000.0 219353.0 267268.0 249488.0 248112.0 265318.0 253719.0 261143.0 217085.0 251637.0 266442.0 False True 218172.02782040936 276163.8538130823 284613.74181142956 279522.95376050344 299104.67463700805 236180.00272028352 248510.51542686313 233284.98503529388 189624.4331130472 249437.4434475274 0.8746562857805462 1.107146745878099 1.1410225260398885 1.1206134487956494 1.1991169830119304 0.9468506390058766 0.9962839259100278 0.9352444517190884 0.7602083732586737 1.0 17.928318521085487 2.2000366977512633 1.5295811321871644 0.895378175624717 1.089603714318205 0.36534770864141586 0.10237737464542573 0.4132273429462504 1.8869079670447808 0.0592014807571113 0.0342035896900818 158.5027121110878 -2.2000366977512633 0.1942255386934879 QREEHYFCK ddPTM_BT-474_Trastuzumab_2h_R1 2 QREEHYFCK 9 1 Q9BQ69 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 0 ; 107.79 0.0016324000000000002 291730000.0 513610.0 534150.0 555190.0 458720.0 429750.0 725330.0 625620.0 448320.0 788410.0 638910.0 False True 510844.78082743497 551928.8598495069 633355.9262020118 516793.90496637876 484476.1151721864 675189.644343164 595356.370499512 481775.91492283234 594116.9196527443 598134.2168016286 0.8540637978530107 0.9227508548178481 1.0588859630681595 0.8640099336396494 0.8099789337630605 1.1288263158619647 0.9953558144241096 0.8054645619490006 0.9932836192345494 1.0 19.190109725060015 QREEKS(ph)PDDLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QREEKSPDDLKK 12 3 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 QREEKS(1)PDDLKK 111.33 0.007703199999999999 270480000.0 388030.0 274120.0 243940.0 229390.0 239270.0 472100.0 414580.0 431280.0 939790.0 423280.0 True False 385940.8895941861 283243.91849096055 278284.63163550955 258430.7504801137 269739.6162356002 439464.8382038626 394525.18155060156 463464.30359546514 708191.3470408195 396265.90801176004 0.9739442172318605 0.7147824548221158 0.7022674068324113 0.6521649863264145 0.6807035649092354 1.1090150056280403 0.9956071758231929 1.1695790483740298 1.7871619352624257 1.0 18.596109327541225 2.1213783454577047 1.2137792654026303 1.3526845660780182 0.743401976192476 0.5467858214461251 0.21807115680956812 0.34178048506926056 0.9480547587723833 0.14788203000504882 0.07583002699691939 132.24472122928182 -2.1213783454577047 -0.6092825898855422 QREESYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 QREESYSR 8 1 P23246;P23246-2;H0Y9K7;H0Y9U2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;; 182.39 0.00020867 2047480000.0 929569.0 982724.0 979149.0 1015575.0 852280.0 860949.0 850643.0 843050.0 1196644.0 891568.0 False True 924564.3037888245 1015433.3742707975 1117004.6682843233 1144146.6908707507 960812.8061406672 801433.6220859498 809494.1483181736 905962.6719211589 901747.1204080853 834667.366930233 1.1077039074730062 1.2165725108019878 1.3382632561669203 1.3707816265523007 1.1511325879126868 0.9601832464512045 0.9698404183397725 1.085417626009674 1.0803670493607058 1.0 19.670841841256557 2.98619536355915 5.748944320642012 1.0272618237236015 1.2618412880176795 0.6853831359105886 0.07641292635021216 0.10400003556142072 12.261781633219304 0.02488021592300815 0.02793540206871768 968.7135255361047 -2.98619536355915 0.23457946429407794 QREEYER ddPTM_BT-474_Trastuzumab_2h_R1 1 QREEYER 7 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 137.9 0.0025879 113920000.0 68296.0 64822.0 65675.0 76363.0 65828.0 66859.0 69124.0 56977.0 82125.0 73479.0 False True 67928.30192439898 66979.56108427342 74921.46914266674 86030.54797032519 74210.80560687535 62237.194699157 65780.20804067687 61228.91306334365 61886.39416861991 68789.50731146312 0.9874805705008934 0.9736886292993103 1.0891409470842623 1.2506347455113842 1.0788099596478549 0.9047483712503019 0.9562535132406046 0.8900908795016247 0.8996487485862125 1.0 16.069900902265132 2.7432082611903823 23.830598837798792 0.9228795531006949 1.0807071738587177 0.475960550229511 0.0762228114570486 187.2510606985776 960122.3079966528 0.025755868015276014 0.02647480755529236 553.6155258697165 -2.7432082611903823 0.1578276207580228 QREFESR ddPTM_BT-474_Trastuzumab_2h_R1 2 QREFESR 7 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 151.04 0.0017405 4752070000.0 231404.0 283030.0 242759.0 264600.0 245864.0 266029.0 270990.0 232536.0 310800.0 308516.0 False True 230158.14657540142 292450.4824547518 276937.35710094625 298098.3328699507 277173.32304989995 247639.0413949062 257881.17841767005 249889.0171138824 234207.50450663114 288826.24474616343 0.7968740748531257 1.0125481592289978 0.9588372322062845 1.0321026509621245 0.9596542145728317 0.8573979889277208 0.8928592297570132 0.8651880556543564 0.8108941232555432 1.0 18.139842315847606 2.747746677271358 22.965438667225097 0.8767376208293323 0.9601965181283753 0.15974906848756198 0.07408363564200696 316.42719191230896 791076.1757292774 0.02171206153369108 0.02269027644764215 559.4311916940055 -2.747746677271358 0.08345889729904299 QRELAEQELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 QRELAEQELEK 11 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 168.76 0.00031956 275500000.0 241740.0 261280.0 206613.0 219053.0 216780.0 271180.0 280580.0 264670.0 361290.0 318800.0 False True 240438.4986998389 269976.54685290495 235702.31448761004 246785.08733999002 244385.64804427384 252433.96488905614 267007.2734803121 284421.01936702826 272254.9205379688 298453.91106158844 0.8056134960490514 0.9045837124151241 0.789744432060637 0.826878382870526 0.8188388189486411 0.8458055181490461 0.8946348618135981 0.9529813777790823 0.9122176337698813 1.0 18.18714863401172 2.0105340693688962 1.6949055046064294 0.9560077179506021 0.8302065457471122 0.7249978895364486 0.03429028183270988 0.1928789206791442 1.0358559583745006 0.020595465231939006 0.01027133020901383 102.45521508366723 -2.0105340693688962 -0.12580117220348996 QRELEIEER ddPTM_BT-474_Trastuzumab_2h_R1 1 QRELEIEER 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 86.27600000000002 0.012994 295270000.0 215770.0 1343100.0 1298300.0 2258300.0 1736700.0 754180.0 837950.0 365500.0 159910.0 430900.0 False True 214608.3182943006 1387804.271578903 1481089.3549741018 2544200.5484512816 1957858.4507726266 702045.3117487583 797415.1572201435 392775.46597139345 120502.32318421922 403399.59308795014 0.5319993425167169 3.440271867791227 3.6715192091212425 6.306899144284929 4.853397188097237 1.7403223101310783 1.9767376340567828 0.9736635155349788 0.2987170171932896 1.0 18.62185010313163 2.5821373715662577 4.396164106332764 1.1559279875166149 3.871145440694093 0.4560012020385632 1.4078091511761794 0.22597063166526934 7.28896344825805 0.5039567904091774 0.46844840322128656 382.0651026347942 -2.5821373715662577 2.715217453177478 QRGEKEDEDEDVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QRGEKEDEDEDVKK 14 3 O43823 O43823 AKAP8 A-kinase anchor protein 8 0 88.76799999999999 0.0028102 256040000.0 216160.0 136550.0 125600.0 125160.0 129410.0 202630.0 186990.0 156990.0 321550.0 171840.0 False True 214996.21857763376 141094.9842037819 143283.3882652293 141005.24316705603 145889.59642683563 188622.6650397132 177944.5793288319 168705.39097906704 242308.31104925068 160873.02408037422 1.3364342456210614 0.8770580711735054 0.8906613715028013 0.8765002334798406 0.9068617766142528 1.172494059323923 1.1061181969198794 1.048686639313622 1.5062084674195615 1.0 17.295562903119297 2.731757958874742 24.542109823312696 1.154523120084141 0.9614870415314227 0.21238353810519905 0.18010106857696417 658.2994394745762 2374956.2703085053 0.056592645009874355 0.05448913418638936 539.2100260722244 -2.731757958874742 -0.19303607855271832 QRIDEFEAL ddPTM_BT-474_Trastuzumab_2h_R1 1 QRIDEFEAL 9 1 P15311;E7EQR4 P15311 EZR Ezrin 0 91.069 0.08973500000000001 288470000.0 464270.0 508260.0 558890.0 500000.0 371610.0 501840.0 520190.0 417430.0 654430.0 496430.0 False True 461770.4219052463 525177.126850342 637576.8540410347 563299.948733845 418932.33079496544 467148.9820042923 495026.42238122295 448580.7462665901 493154.4954127231 464747.4123848942 0.9935943904144162 1.1300270057564112 1.3718782225580348 1.2120561270975547 0.9014193939137295 1.0051674728151239 1.06515154079277 0.9652140804069389 1.0611237034802525 1.0 18.82608730698367 3.253215207481182 24.979010827886356 1.0004617498389459 1.1874695109944116 0.4423664926221752 0.09717875516989169 220.42961493068393 375723.89632998465 0.02802056166040736 0.037775866307244624 1791.493379170508 -3.253215207481182 0.1870077611554657 QRKES(ph)ETQCQTENK ddPTM_BT-474_Trastuzumab_2h_R1 1 QRKESETQCQTENK 14 2 Q9NZJ5 Q9NZJ5 EIF2AK3 Eukaryotic translation initiation factor 2-alpha kinase 3 1 QRKES(0.333)ET(0.333)QCQT(0.333)ENK 62.89100000000001 0.057832000000000015 681200000.0 336130.0 469630.0 431120.0 443800.0 391550.0 421720.0 462500.0 438600.0 425590.0 517500.0 True False 334320.31342755374 485261.3506526699 491817.94863778376 499985.034496161 441411.5716013262 392567.4890220983 440127.10807842494 471330.5591656717 320709.04711382545 484472.7069459597 0.690070479996813 1.001627839288784 1.0151613116415314 1.0320189916331688 0.9111175207039337 0.8102984613865711 0.9084662598496364 0.9728732958701966 0.6619754684129168 1.0 18.886055867295298 3.0025879035920706 24.872778835698707 0.8788569489288491 0.9485350924317479 0.04921841121542114 0.1253637413996221 236.90417300091988 2276872.3604862024 0.03585778499446744 0.04261177029049608 1005.9766576058071 -3.0025879035920706 0.0696781435028988 QRLEAEAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 QRLEAEAGR 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 92.428 0.0091957 1191890000.0 668780.0 783380.0 752600.0 765570.0 678380.0 686100.0 766970.0 639200.0 887260.0 760830.0 False True 665179.3627884429 809454.3297367904 858559.5382835314 862491.0835043393 764767.67192672 638671.5219056766 729868.7309900745 686900.3497918327 668606.6616748823 712273.1780206654 0.93388236889238 1.136438033489035 1.2053795717387266 1.2108992871262036 1.0736999448047888 0.8966665341526402 1.0247033771765846 0.9643776727640634 0.9386941447561904 1.0 19.442071138365932 2.953887498370097 6.421172520417891 0.9688341167351998 1.1304968060405656 0.47653197247668877 0.0781226620646088 0.18614404737417029 19.65456848389613 0.024237303010646208 0.026167981423769426 899.2646017378365 -2.953887498370097 0.16166268930536576 QRPDLGS(ph)AQK ddPTM_BT-474_Trastuzumab_2h_R1 2 QRPDLGSAQK 10 1 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RFR3 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 1 QRPDLGS(1)AQK;QRPDLGS(1)AQK 95.428 0.0060074 175110000.0 358200.0 231670.0 214720.0 203460.0 190945.0 328990.0 309150.0 269110.0 454150.0 346030.0 True False 356271.49099976115 239380.99590252762 244950.70962030298 229218.01513877625 215260.71393031563 306247.69565915805 294195.233432314 289192.3547128912 342230.8177982191 323946.0691488126 1.0997864303026905 0.7389532354305619 0.7561465717547535 0.7075807888055566 0.664495526974369 0.9453662965068288 0.9081611460985753 0.8927175917669296 1.0564438046661617 1.0 18.305394126288103 1.927194501528571 1.1086815798504388 1.0056128761905605 0.7934211060290732 0.29869434365645475 0.12146585017512472 0.6237054428185747 1.4105593336095237 0.097628554212166 0.043252665371764795 84.56574934171488 -1.927194501528571 -0.21219177016148727 QRPDLGSAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QRPDLGSAQK 10 1 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RFR3 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 111.5 0.001592 239470000.0 175550.0 180210.0 167850.0 168480.0 161710.0 199910.0 204170.0 180050.0 234670.0 213140.0 False True 174604.85830543842 186208.18091075457 191481.82102164623 189809.5507253566 182302.8099697365 186090.69223752207 194293.51709485863 193486.2452753748 176838.72291689535 199537.22272166537 0.8750490556290587 0.9332002238524514 0.9596295789319689 0.9512488353620221 0.9136280814333616 0.9326114180565704 0.9737206644690991 0.9696749440342212 0.8862442831710042 1.0 17.60629837390101 -4.999999946978516 0.00834726201584825 2.0312152345428904 6.157148156426277e-10 0.27450061275954185 0.03190604809017543 25485.06669306475 16.163298017383198 2229.414452686021 1732.8059757928663 1.0000001220864863e-05 4.999999946978516 -2.0312152339271754 QRPHS(ph)LS(ph)ITPEAFDSDEELEDILEEDEDSAEWRRR ddPTM_BT-474_Trastuzumab_2h_R1 1 QRPHSLSITPEAFDSDEELEDILEEDEDSAEWRRR 35 3 Q9UPA5 Q9UPA5 BSN Protein bassoon 2 QRPHS(0.5)LS(0.5)IT(0.5)PEAFDS(0.5)DEELEDILEEDEDSAEWRRR 44.916 0.047915 378380000.0 154900.0 260800.0 212680.0 233590.0 215950.0 200940.0 168840.0 10205.0 236130.0 61147.0 True False 154066.03561100797 269480.57034307084 242623.49535230047 263162.4700494775 243449.95246406947 187049.49076188097 160672.5641685647 10966.548919940009 177938.92547989308 57244.546109419534 2.691366183889727 4.70753265870909 4.238368750248105 4.597162313881538 4.252806057693766 3.267551294831599 2.8067750569888124 0.19157368981453893 3.1083996218569614 1.0 15.804850628641956 2.1642837411526332 2.2569534740901394 1.370010120945329 4.123755142628132 0.6160756944801599 0.8892871504535282 0.17817592100669918 1.812070474794787 0.40843594606050154 0.258775010383547 145.97676706986894 -2.1642837411526332 2.7537450216828026 QRPPLER ddPTM_BT-474_Trastuzumab_2h_R1 2 QRPPLER 7 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 ; 75.854 0.038615 251670000.0 272110.0 313870.0 290680.0 320860.0 291480.0 301320.0 304170.0 301600.0 357020.0 335950.0 False True 270644.9899942628 324316.9732115787 331605.2173641466 361480.84310148336 328598.2502626854 280490.4576309843 289456.1350577608 324106.9234937686 269037.20482289983 314509.3833787343 0.8605307323004424 1.0311837749560369 1.0543571508161504 1.1493483571718612 1.0447963324101692 0.8918349418313406 0.9203418096724822 1.0305159102470305 0.8554186903190848 1.0 18.26274353495003 2.759741202402715 24.090865068425522 0.9472853622885917 1.0364188079988852 0.22248165637215966 0.08127448650431736 817.8378007248393 930209.1727073182 0.025526419648459173 0.02704601078295682 575.0971328197844 -2.759741202402715 0.08913344571029347 QRQEEPPPGPQRPDQSAAAAGPGDPK ddPTM_BT-474_Trastuzumab_2h_R1 3 QRQEEPPPGPQRPDQSAAAAGPGDPK 26 2 Q9BQ61;K7EN60;K7ELS0;K7ERU7 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 ;; 138.99 1.7042e-06 968980000.0 774479.0 636637.0 639643.0 606851.0 595113.0 770454.0 760036.0 675044.0 936237.0 807547.0 False True 770309.2911167055 657827.0776898067 729699.1745233758 683678.2743781655 670897.1130388962 717194.3284336332 723270.155060527 725419.2110839771 705513.9362830592 756008.6590842291 1.0189159632771918 0.870131670828543 0.9651994930947978 0.9043259837874356 0.8874198793590136 0.9486588808419038 0.95669559649838 0.9595382306370595 0.9332088036368057 1.0 19.528043233150797 2.4933298443133816 23.58911336398792 0.9581797469034139 0.925685743358992 0.11679582947849698 0.04199584591607569 714.3272440699662 1039595.9047121339 0.012868746499618984 0.011808192290840687 311.4080566553775 -2.4933298443133816 -0.03249400354442189 QRQELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QRQELEK 7 1 P35579 P35579 MYH9 Myosin-9 0 127.02 0.003552599999999999 172500000.0 257290.0 257220.0 216670.0 213130.0 222060.0 226450.0 247610.0 233400.0 326900.0 267750.0 False True 255904.77922760617 265781.4122072266 247175.25267059906 240112.2361472885 250338.02474726204 210796.04450596173 235632.15833794343 250817.4931811856 246339.87523557796 250661.965767692 1.0209158714759825 1.0603180717634162 0.9860899794413791 0.9579125233934344 0.9987076578632987 0.8409574378799969 0.9400395373756948 1.000620466742999 0.9827572941954837 1.0 17.935383579658865 4.06291271842647 3.9491166680864493 0.9587730085714493 1.0401409695823716 0.3264336980654944 0.04550977180019214 0.2508950441338458 7.905521303633596 0.012145361808662367 0.028024960613925363 11558.799179035674 -4.06291271842647 0.08136796101092225 QRS(ph)APDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 QRSAPDLK 8 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 QRS(1)APDLK 72.34 0.028105 200840000.0 268840.0 260840.0 227920.0 225900.0 209450.0 254100.0 257600.0 216000.0 308950.0 254540.0 True False 267392.5953109318 269521.9017188903 260009.15488384597 254498.91683795123 236122.2159925875 236534.6650870609 245138.90387243725 232119.01682577562 232813.41221790094 238295.03927734212 1.12210726720049 1.1310428556811225 1.0911228184705586 1.067999223188822 0.990881793883146 0.9926126276248982 1.0287201303722056 0.9740824547993276 0.9769964701067011 1.0 17.862389392878672 3.532630109599162 1.5198786480911388 0.9917576448389553 1.125448912261331 0.9151829975735035 0.016747365433757558 0.10312289189379036 0.4755246504462345 0.00537819363067811 0.010359246637534469 3409.024399278866 -3.532630109599162 0.13369126742237558 QRS(ph)DDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_BT-474_Trastuzumab_2h_R1 1 QRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 33 2 R4GN77;R4GND1;A0A1B0GX65;Q969T4;R4GMM6;R4GNG6 R4GN77 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 QRS(0.723)DDES(0.228)PS(0.014)T(0.014)S(0.014)S(0.003)GS(0.003)S(0.001)DADQRDPAAPEPEEQEER 80.268 0.00064504 240970000.0 14508.0 14767.0 16078.0 16239.0 12577.0 16360.0 13768.0 12954.0 18429.0 22257.0 True False 14429.890539990332 15258.51066815999 18341.642647518765 18294.855734977813 14178.606400280618 15229.07170729758 13101.98924113245 13920.69325907915 13887.419885948208 20836.53920482361 0.6925281784150531 0.7322958250488968 0.8802633905381331 0.8780179642664746 0.6804683954904711 0.7308829723398638 0.6287987228752158 0.6680904694507301 0.6664935932706763 1.0 14.346828056078772 3.2135180866402693 24.975289943738193 0.703114058837238 0.7972768564246674 0.04969420380627765 0.11230156511457348 431.90997743449077 430748.978630577 0.031293561853638525 0.03741722976720506 1635.0012410198813 -3.2135180866402693 0.0941627975874294 QRS(ph)PDIFQEAGWNSNGSWSPGPGER ddPTM_BT-474_Trastuzumab_2h_R1 1 QRSPDIFQEAGWNSNGSWSPGPGER 25 1 Q8TBB1-2;Q8TBB1 Q8TBB1-2 LNX1 E3 ubiquitin-protein ligase LNX 1 QRS(1)PDIFQEAGWNSNGSWSPGPGER 119.55 0.00028324 147810000.0 70793.0 78666.0 73059.0 74337.0 74380.0 92796.0 100290.0 85461.0 122550.0 92643.0 True False 70411.85835384177 81284.35025539873 83345.07215978822 83748.05657805577 83851.85211520022 86381.23093828768 95438.58955499504 91838.53378216486 92349.1945858674 86730.4444243372 0.8118470834686936 0.9372066613392073 0.9609667368013738 0.9656131377386952 0.9668098978594739 0.995973576656186 1.1004047101160048 1.0588961510774213 1.0647840582257357 1.0 16.404250881765662 6.567637250216604 0.3606520917849813 1.0613575888440334 2.2142960606576548e-16 0.7807831806444223 0.0359710900129186 10.31437961201973 0.37334251972852495 0.031203958344539796 6.2280609594081495 3695194.0523683764 -6.567637250216604 -1.0613575888440332 QRS(ph)PIALPVK ddPTM_BT-474_Trastuzumab_2h_R1 4 QRSPIALPVK 10 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK 98.406 0.014202 1659560000.0 2642570.0 2648580.0 2650470.0 2307460.0 1991070.0 2799020.0 2792340.0 2292760.0 3935250.0 2883790.0 True False 2628342.696737126 2736736.3841995825 3023633.1377017726 2599584.1994107985 2244620.9625035156 2605530.3355843583 2657263.846425319 2463857.3935993784 2965460.3671483896 2699744.053263165 0.9735525460497869 1.0137021622074527 1.1199702927568724 0.9629002409575441 0.8314199117469877 0.9651027223988395 0.9842650984686862 0.9126262878961908 1.098422779583144 1.0 21.364391209714814 3.513513042172077 24.76878349795695 0.953870687974191 1.0348540047034236 0.15717944896044622 0.07226239983949391 813.6185113021335 553758.3333159614 0.019000834342220947 0.029424680780597106 3262.2184692117603 -3.513513042172077 0.08098331672923265 QRS(ph)PIALPVKQEPPQIDAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 QRSPIALPVKQEPPQIDAVK 20 2 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 QRS(1)PIALPVKQEPPQIDAVK;QRS(1)PIALPVKQEPPQIDAVK 170.27 4.9834e-12 825580000.0 560970.0 532340.0 530900.0 670020.0 632760.0 722110.0 773020.0 697020.0 1053260.0 834530.0 True False 557949.799849626 550058.6150936746 605646.1053344762 754844.4633013011 713338.2353376446 672192.2353640985 735626.0693768301 749035.1717958441 793698.1859609201 781269.5809229215 0.7141578444542975 0.7040573811204641 0.7752075853497591 0.9661766971774274 0.9130500569278162 0.8603844969492235 0.9415777694913294 0.9587409904158836 1.0159082157317791 1.0 19.575460917750274 5.027432265161431 0.38118765306611824 0.9928150397726333 0.35746340293530793 0.8157038081053982 0.047215819958136604 3.13451612747447 0.3067312978736656 0.04193742187950806 0.9561708657870288 106520.27161251254 -5.027432265161431 -0.6353516368373253 QRS(ph)PLLNQPVPELSHASLIANQSPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 QRSPLLNQPVPELSHASLIANQSPFR 26 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR 275.23 7.926199999999998e-61 3878660000.0 429319.0 713752.0 845955.0 973352.0 956519.0 1018007.0 792874.0 793205.0 793427.0 892497.0 True False 427007.59420582466 737508.8038478054 965058.1108273249 1096578.2633999712 1078326.0249177092 947634.572220714 754519.6555471852 852397.9849133777 597897.5472270998 835537.077354875 0.5110576248245451 0.882676333386179 1.155015303309441 1.3124232222841559 1.2905783048329227 1.1341622028560536 0.9030355157138292 1.0201797239350294 0.7155846980721797 1.0 19.672344324421825 -1.7969522841012502 8.621331433528256 0.9997760203426709 1.0126110204922243 0.0 0.2389423322801019 0.0010879183348696383 2.5622498189459158e-05 0.24467963124467723 0.05666577503623415 0.015960544959790365 1.7969522841012502 0.01283500014955341 QRS(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 QRSPSPAPAPAPAAAAGPPTR 21 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR 163.29 2.0917e-10 5307810000.0 1348510.0 1510940.0 1405250.0 1580350.0 1435170.0 1563700.0 1534670.0 1468390.0 1645100.0 1545710.0 True False 1341249.7719935451 1561230.724517482 1603096.9853480384 1780422.1479630633 1617930.3925809606 1455605.0995538638 1460432.1490912805 1577968.7181333378 1239687.1482106126 1447061.4644510918 0.9268782321574129 1.0788973121537015 1.107829228218813 1.2303707836200475 1.1180799380865856 1.0059041273039586 1.0092398871565975 1.0904641972011206 0.8566928072269953 1.0 20.464694771480968 2.731890016414539 23.652425176999998 1.0070512901285353 1.1001813219092687 0.2336481458823364 0.08799791569129993 426.81006987200607 1513365.3988821034 0.029134219375107163 0.028108082272090777 539.3740106025207 -2.731890016414539 0.09313003178073331 QRS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 QRSPSK 6 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 QRS(0.998)PS(0.002)K 54.712 0.097627 49818000.0 65571.0 56876.0 49651.0 60554.0 56747.0 141250.0 75101.0 61025.0 68175.0 61121.0 True False 65217.973021622915 58769.08327773198 56641.42922577153 68220.13019125853 63973.39408417937 131485.71996673505 71468.07771631949 65578.99537867111 51374.184748196836 57220.2054516792 1.1397717380916712 1.0270687218584136 0.9898851075185945 1.1922384698333257 1.118021048320126 2.2978896864984333 1.2490007184030858 1.1460810890315776 0.8978329305647258 1.0 15.804237057280217 2.965923590744245 24.984903644596343 1.3463512765195687 1.0858808761700283 0.08630095223469592 0.3609748963729401 1512.7196010266816 1109129.7673539727 0.1149583463491789 0.12199600591161214 924.5354979497987 -2.965923590744245 -0.2604704003495404 QRS(ph)SPVTK ddPTM_BT-474_Trastuzumab_2h_R1 3 QRSSPVTK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 QRS(0.604)S(0.396)PVTK;QRS(0.61)S(0.39)PVTK;QRS(0.6)S(0.4)PVTK 60.434 0.05591 633952000.0 467300.0 450498.0 453502.0 431391.0 429155.0 366418.0 467600.0 465989.0 648370.0 546510.0 True False 464784.1087219103 465492.5535982084 517351.1396899524 486005.0563684841 483805.34544902755 341088.38611519354 444980.40159453347 500763.46542419656 488587.9012128838 511631.26390924957 0.9084357065489087 0.909820385176413 1.011179683854733 0.9499127411703463 0.9456133344010079 0.6666683804836719 0.8697287147672463 0.9787585332412746 0.9549609956977667 1.0 18.964744899150354 -1.7467955385090959 7.830016353930705 1.0009194763396374 0.9116644265656759 0.08179459682803714 0.08982786429458946 0.001532549725184301 4.955902327222057e-05 0.09244759450886582 0.021571501645704757 0.017914490518003343 1.7467955385090959 -0.08925504977396148 QRSS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 5 QRSSPVTK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 QRS(0.006)S(0.994)PVTK;QRS(0.04)S(0.96)PVTK;QRS(0.086)S(0.914)PVTK;QRS(0.105)S(0.895)PVTK;QRS(0.006)S(0.994)PVTK 110.31 0.0020901 11478400000.0 6138140.0 5236920.0 4739850.0 4435400.0 4486880.0 3867660.0 5682310.0 5456010.0 6989680.0 5831890.0 True False 6105092.936251471 5411227.716415005 5407179.6804852495 4996921.185228192 5058257.5721786665 3600297.76769233 5407434.956767817 5863165.171257402 5267167.020913473 5459693.787267776 1.118211601992916 0.9911229323948907 0.9903814922908329 0.9152383594994306 0.9264727600611458 0.6594321784288284 0.9904282488109811 1.0739000024013319 0.9647367098126853 1.0 22.380388607652705 -0.29151498141763055 7.0545648027898205 0.9999999998794895 0.9595226151769923 0.011176455769378868 0.11589013547950754 0.0 0.0 0.11813277574425832 0.027844162477173435 0.5110754486802954 0.29151498141763055 -0.04047738470249718 QRT(ph)LEDEEEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 QRTLEDEEEQER 12 1 O00515;E9PDI4;A0A0J9YYF6;A0A0J9YW63;A0A0J9YVY2 O00515 LAD1 Ladinin-1 1 QRT(1)LEDEEEQER;QRT(1)LEDEEEQER 283.22 5.484299999999999e-28 2524300000.0 813730.0 779310.0 588410.0 791300.0 610380.0 615490.0 615320.0 598490.0 666980.0 760820.0 True False 809348.9680939022 805248.8622471575 671253.0134485955 891478.4988661831 688108.2749942968 572942.6250076155 585554.6208493325 643152.3628706412 502611.71607410844 712263.8162292265 1.1363050454797088 1.1305486027778304 0.9424218922172054 1.2516127852538284 0.9660862440509602 0.8043966462325899 0.8221035626227636 0.9029693046539046 0.7056538667582039 1.0 19.442052176120463 3.00644831878824 6.442667051946912 0.8476035674679022 1.1053716806422746 0.6178068703016555 0.09928911509137058 0.09358857458832733 17.89644985088386 0.02773095490926378 0.0320581080901984 1014.9585789214664 -3.00644831878824 0.2577681131743724 QRT(ph)LEDEEEQERER ddPTM_BT-474_Trastuzumab_2h_R1 2 QRTLEDEEEQERER 14 2 O00515;E9PDI4;A0A0J9YYF6;A0A0J9YW63;A0A0J9YVY2 O00515 LAD1 Ladinin-1 1 QRT(1)LEDEEEQERER;QRT(1)LEDEEEQERER 222.06 1.922e-10 1239470000.0 261620.0 293660.0 283290.0 306690.0 260930.0 366260.0 334000.0 308860.0 360950.0 351730.0 True False 260211.46698871438 303434.29557878146 323174.7695991788 345516.92255436553 294157.8888467221 340941.3082833016 317843.1439960949 331908.70155930147 271998.7089822023 329282.2902687965 0.7902382687398739 0.9215020198355792 0.981452022018457 1.0493030836013577 0.8933304266275541 1.0354073643164585 0.9652603659207918 1.007976169287334 0.8260350374754954 1.0 18.328965396244232 4.685743163051678 2.534101778276805 0.9737722070616686 0.7625320527483174 0.4221967740164865 0.06317189619445485 0.3850157214857009 3.412046397045332 0.014722844501986805 0.1655308155689317 48500.1590761863 -4.685743163051678 -0.2112401543133512 QRWDEAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 QRWDEAFR 8 1 P27695;G3V3M6;G3V5Q1;H7C4A8 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 165.15 0.00029726 645050000.0 563940.0 777320.0 856550.0 629310.0 440100.0 516440.0 644330.0 478900.0 1120580.0 564610.0 False True 560903.8096996238 803192.6263001376 977144.7947339353 708980.5814753926 496144.12632293114 480739.7183689952 613161.2963203714 514637.9498049263 844428.0740027049 528576.1064130595 1.0611599784673234 1.5195401694386788 1.848635953987558 1.3413027431121805 0.9386427428394121 0.9094995262485772 1.1600246187465997 0.9736307478922607 1.5975524881989664 1.0 19.011751685760434 3.4394351341654925 6.74155327886653 1.0857345496629962 1.4994404564861106 0.31320224481804093 0.25589131009874694 0.2024872983169084 25.963750824446834 0.07056881042199889 0.09672610230030797 2750.6487398778504 -3.4394351341654925 0.41370590682311437 QS(ph)FTMVADTPENLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSFTMVADTPENLR 14 0 Q14847;Q14847-2;C9J9W2;F6S2S5 Q14847 LASP1 LIM and SH3 domain protein 1 1 QS(0.789)FT(0.211)MVADTPENLR;QS(0.965)FT(0.035)MVADTPENLR 236.75 2.9721e-17 368860000.0 556930.0 495460.0 467600.0 544580.0 400510.0 538730.0 493520.0 518200.0 660770.0 548860.0 True False 553931.5507607398 511951.0865881058 533434.0155479404 613523.772162955 451512.5744912453 501488.86313401087 469646.5521705179 556870.7153662822 497932.08736437146 513831.284897313 1.0780416978141778 0.9963408255501941 1.0381501306494891 1.194017939732037 0.8787175630644565 0.9759796218601818 0.9140092594096811 1.0837617944527655 0.9690575525464182 1.0 18.970935206622134 3.2280706748488837 24.999999876637343 0.9782261791032965 1.0681530709870448 0.3569636630138838 0.06908236223116089 282.10070863148616 672310.8094952062 0.020582567784654667 0.0248451734897382 1690.7160476854845 -3.2280706748488837 0.08992689188374836 QS(ph)GDGQESTEPVENK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSGDGQESTEPVENK 15 0 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 QS(1)GDGQESTEPVENK;QS(1)GDGQESTEPVENK 304.2 1.4480999999999999e-44 947230000.0 1179530.0 814980.0 739100.0 683700.0 764380.0 1125410.0 972680.0 984950.0 1212610.0 982820.0 True False 1173179.5415381037 842106.1166341859 843158.8556276349 770256.3498986596 861719.2621647851 1047613.0556301826 925627.7524015618 1058451.9704747593 913778.5136415246 920095.586165465 1.2750626773761369 0.9152376441057573 0.9163818067441591 0.8371481849062375 0.936554065818351 1.1385915456851083 1.0060125994725748 1.1503717509241622 0.9931343301512107 1.0 19.81142422095813 2.7539352086389877 24.54953682725369 1.0694043889025142 0.9616622601381433 0.09339229438890773 0.1202309261495173 1212.6020991373255 1936232.4642443277 0.036519966294073995 0.03859993364513244 567.4599410940658 -2.7539352086389877 -0.10774212876437095 QS(ph)HSSSS(ph)PHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSHSSSSPHPK 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 QS(0.411)HS(0.293)S(0.29)S(0.154)S(0.851)PHPK 73.91 0.022325 1322500000.0 2641800.0 2189700.0 1986200.0 1993300.0 2137900.0 1757900.0 2463400.0 1412300.0 3081200.0 2605000.0 True False 2627576.8423315748 2262582.8407983985 2265839.6956401127 2245651.575622344 2410148.8926739204 1636380.5106514913 2344235.9308981467 1517692.9975140868 2321879.545964708 2438746.6697472953 1.0774291872652135 0.9277646050185478 0.9291000675666328 0.9208219957733617 0.9882735761659335 0.6709924121889439 0.961246184352989 0.6223249902669682 0.9520790227077185 1.0 21.21770847207448 2.7737824021960336 24.87531000385538 0.8120893723859869 0.9615475217191112 0.1925097727651629 0.12291040957967286 747.3480161258553 527811.5239846823 0.03520588686081992 0.03733992338156303 593.9944705647713 -2.7737824021960336 0.1494581493331243 QS(ph)HSSSSPHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSHSSSSPHPK 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QS(0.24)HS(0.24)S(0.24)S(0.24)S(0.039)PHPK 72.49600000000002 0.077113 50969000.0 65948.0 161620.0 100200.0 127900.0 93065.0 40594.0 64796.0 104160.0 64597.0 127670.0 True False 65592.9432955116 166999.4239986468 114307.28904598695 144092.12688611762 104916.27611052844 37787.83232799744 61661.569935242456 111932.94811376296 48677.93490545317 119521.9912962138 0.5487939297543267 1.397227591236902 0.9563703533243255 1.2055699986541484 0.87779893032833 0.316157988318209 0.5159014610326005 0.9365050473126509 0.407271786367863 1.0 16.866916563898496 2.9940265849905057 23.93591199810426 0.6418290124002999 1.047553361493999 0.3013344796991182 0.2822009062304029 180.48592019131124 723228.3034722249 0.07934116833586966 0.09184647986118649 986.3398617916171 -2.9940265849905057 0.40572434909369903 QS(ph)PALQHRPMGQSQANHIPGDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QSPALQHRPMGQSQANHIPGDR 22 1 Q5TCQ9;Q5TCQ9-1;Q5TCQ9-3;Q5TCQ9-2 Q5TCQ9 MAGI3 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 1 QS(1)PALQHRPMGQSQANHIPGDR;QS(0.972)PALQHRPMGQS(0.028)QANHIPGDR;QS(1)PALQHRPMGQSQANHIPGDR;QS(1)PALQHRPMGQSQANHIPGDR 195.39 1.506e-19 1774300000.0 324351.0 387069.0 389580.0 388120.0 406893.0 471576.0 481001.0 319090.0 423970.0 436850.0 True False 322604.73025478394 399952.3576768489 444429.4777099368 437255.95220516005 458708.41170623957 438977.06109049864 457733.14402774104 342902.11610618886 319488.27440693806 408969.85899389855 0.7888227534626138 0.9779506946080733 1.0867047239209071 1.0691642491230229 1.1216191159776474 1.0733726494427251 1.1192344226877855 0.8384532712258012 0.7812024954428354 1.0 18.641634995153023 1.6857714205647205 7.480197967275976 0.8583016725691236 1.0396837534916374 0.3233338909015284 0.10524299825281093 0.13380369313940313 14.505074778518168 0.053293259066451305 0.027727091111302768 48.503314857623856 -1.6857714205647205 0.18138208092251384 QS(ph)PGHQS(ph)PLASPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSPGHQSPLASPK 13 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 2 QS(1)PGHQS(1)PLASPK 96.917 0.0021221 273410000.0 346790.0 327070.0 314990.0 296480.0 274420.0 431680.0 401460.0 361600.0 481830.0 415210.0 True False 344922.92117199075 337956.3272320095 359337.85405783926 334014.33760122105 309365.7603852272 401838.97766541643 382039.846073869 388584.42816759454 363089.4526912164 388710.9423208345 0.8873506856086857 0.8694283860758076 0.9244346246400461 0.8592872009389745 0.7958761298000269 1.033773259034592 0.9828378995272551 0.9996745289636443 0.9340860088047878 1.0 18.568338194951085 2.729470715511389 24.999964162183954 0.990253237947317 0.8701267374474362 0.726671307004258 0.03763595674477804 356.5868450534422 980718.8506225784 0.01221877053415408 0.011668245685008486 536.3777022579568 -2.729470715511389 -0.12012650049988083 QS(ph)PGPALAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSPGPALAR 9 0 P85037 P85037 FOXK1 Forkhead box protein K1 1 QS(1)PGPALAR;QS(1)PGPALAR 95.094 0.0086832 1678090000.0 2207130.0 2445400.0 2239560.0 2362500.0 2280600.0 2488600.0 2394100.0 2294800.0 2773000.0 2648000.0 True False 2195247.057315195 2526793.660724485 2554870.5813955194 2661592.2577674175 2571020.891824754 2316568.939534277 2278288.236649854 2466049.6287582857 2089631.306296294 2479002.3729331447 0.8855364889053287 1.0192784356776527 1.0306043307141364 1.0736545825158825 1.0371191733805134 0.9344762896670095 0.9190343105457351 0.994775017435932 0.8429323542049908 1.0 21.24132822171583 2.730728161623432 24.485285847317204 0.9410634916805085 1.0145620215981666 0.24906264185048366 0.06119214151514707 641.2192724966809 2004530.040676897 0.019558045875528993 0.018756873657580986 537.9329681987558 -2.730728161623432 0.07349852991765804 QS(ph)PLTYEDHGAPFAGHLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSPLTYEDHGAPFAGHLPR 19 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 QS(0.997)PLT(0.003)YEDHGAPFAGHLPR;QS(1)PLTYEDHGAPFAGHLPR;QS(1)PLTYEDHGAPFAGHLPR 286.93 4.9993e-40 1341140000.0 474160.0 640150.0 629840.0 686800.0 626040.0 654120.0 681650.0 466990.0 624170.0 626540.0 True False 471607.17524412903 661457.0057711529 718515.9973325806 773748.8095808091 705762.4831702058 608902.224032854 648675.9853441257 501839.1651271708 470351.6669494977 586553.6807921184 0.804030714814101 1.1277007159479084 1.2249790954550863 1.3191440697054202 1.2032359633599101 1.0381014457373359 1.105910689142916 0.855572442149636 0.8018902316226295 1.0 19.161903622705307 1.7816076797382852 4.171986657435223 0.8702997582553487 1.1327524567497989 0.37112090193564606 0.13693444887448264 0.21151305703100745 7.115668427677968 0.07299619573867168 0.038343622365020306 60.47942865163496 -1.7816076797382852 0.2624526984944502 QS(ph)PNSSSAAASVASR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSPNSSSAAASVASR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 QS(0.999)PNS(0.001)SSAAASVASR;QS(0.978)PNS(0.011)S(0.005)S(0.005)AAASVASR 167.97 1.3431e-06 1118330000.0 844190.0 1012260.0 1005850.0 958590.0 1029320.0 963710.0 1035570.0 876380.0 944420.0 992960.0 True False 839644.974838327 1045952.4621759086 1147464.9369950704 1079947.3957135517 1160397.8007423733 897090.996029324 985475.5228384316 941779.9257674684 711680.3455796405 929588.4426841738 0.9032437757227959 1.1251779972174947 1.234379521416791 1.1617478726340642 1.2482919832692203 0.9650410384180188 1.0601202398696832 1.0131149254051524 0.7655864820400233 1.0 19.826232606662604 1.877288545016466 1.2382526946401715 0.9027223144464599 1.1295942002953303 0.34836128952362366 0.1155821890497413 0.4988784949877306 1.416678675929551 0.09077660186894831 0.038674099182570004 75.38562590710437 -1.877288545016466 0.2268718858488704 QS(ph)PSFK ddPTM_BT-474_Trastuzumab_2h_R1 4 QSPSFK 6 0 Q6IN85-2;Q6IN85;Q6IN85-4 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 QS(0.92)PS(0.08)FK;QS(0.813)PS(0.187)FK;QS(0.994)PS(0.006)FK;QS(0.971)PS(0.029)FK 97.857 0.042582 4350810000.0 7053000.0 6168900.0 5768500.0 5589700.0 5916200.0 6646700.0 7043500.0 6960200.0 8827600.0 6936400.0 True False 7015027.43166197 6374228.107321207 6580654.659299174 6297355.446875145 6669593.001935285 6187229.2736488255 6702778.996217053 7479605.467179463 6652156.26377972 6493713.013449194 1.0802798671781577 0.9815999096540731 1.0133885876493025 0.9697618964423942 1.0270846568245044 0.9528030051273275 1.0321951374098086 1.1518226092973893 1.0243994845479578 1.0 22.6306121961375 1.9920193445940209 24.940785570877505 1.079709630198301 1.0021494534523259 0.1563964953146837 0.050370500025435715 393.4515930185781 1229597.2376065073 0.018425922579743126 0.01297447384891938 98.17916735741399 -1.9920193445940209 -0.07756017674597504 QS(ph)PSPS(ph)TRPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 QS(0.959)PS(0.061)PS(0.855)T(0.124)RPIR 108.58 0.024439 200640000.0 334790.0 345770.0 265130.0 316650.0 337130.0 364540.0 343510.0 311390.0 372850.0 341410.0 True False 332987.52783866605 357278.7454276215 302457.99944872834 356737.85753314383 380061.5071739367 339340.2078348571 326893.10896436695 334627.5030063806 280966.11343403294 319620.9215041931 1.041820185836294 1.1178202720466608 0.9463022571404495 1.1161279926679135 1.1891008429150989 1.061695855946668 1.0227525389325256 1.0469511865229717 0.8790604573435189 1.0 18.28600232063282 1.402388631652724 4.211060505392698 0.9404599841715727 1.0713287000395915 0.3683801411900556 0.06703069050107806 0.22728081566247463 6.6000268976683625 0.04909760533053466 0.017236647546767906 25.257399387154486 -1.402388631652724 0.13086871586801874 QS(ph)PSPSTRPIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 QS(0.912)PS(0.088)PSTRPIR;QS(0.637)PS(0.363)PSTRPIR;QS(0.888)PS(0.112)PSTRPIR 110.55 0.0010778 2797330000.0 1708700.0 2060410.0 1817620.0 1938640.0 1838200.0 1959160.0 2087610.0 1764990.0 2071230.0 1883550.0 True False 1699500.5490544185 2128989.501305854 2073525.0969637453 2184071.6252267626 2072283.8741349939 1823727.880566575 1986624.328855352 1896702.5162376189 1560803.1195600678 1763340.2264117133 0.9637961657080752 1.2073617271456536 1.1759075565259682 1.2385991044230933 1.175203652191365 1.0342461728317438 1.1266256500584733 1.07563049253251 0.8851400859471142 1.0 20.7498794305967 1.4362705436292678 3.498600230046985 0.9442484780070383 1.1372120467362368 0.450609938492741 0.08157202724901673 0.19857536013631935 4.392925879022974 0.06067197609384269 0.02116319744503597 27.30678328397107 -1.4362705436292678 0.1929635687291985 QS(ph)PSS(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSPSSSPTR 9 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 QS(0.999)PS(0.327)S(0.483)S(0.19)PT(0.001)R 81.709 0.029992 115680000.0 230600.0 197940.0 210300.0 224380.0 224770.0 166200.0 220760.0 228870.0 251540.0 233010.0 True False 229358.47522206884 204528.31324274343 239908.4120396314 252786.48499380035 253393.1271838337 154710.9851927176 210080.99541490417 245949.44157831147 189551.33746331406 218139.10231010246 1.0514321952971877 0.9376050010143977 1.0997955410056748 1.158831600188965 1.1616125880247494 0.7092308694512888 0.963059777867138 1.1274890149161536 0.8689470867715016 1.0 17.734888876476308 QS(ph)SFEIPDDVPLPAGWEMAK ddPTM_BT-474_Trastuzumab_2h_R1 6 QSSFEIPDDVPLPAGWEMAK 20 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK;QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK;QS(0.613)S(0.387)FEIPDDVPLPAGWEMAK;QS(0.636)S(0.364)FEIPDDVPLPAGWEMAK;QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK;QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK 176.84 4.359e-17 1613890000.0 2870270.0 2545450.0 2355990.0 2329490.0 2279180.0 2900200.0 2681740.0 2623500.0 3466070.0 2872890.0 True False 2854816.7852369756 2630173.7644929825 2687692.9133678153 2624403.195152009 2569420.0632417584 2699716.000336456 2552013.9909583465 2819278.891863064 2611903.491458487 2689539.7005951283 1.0614518107337385 0.9779271017680052 0.9993133445002116 0.9757815415668687 0.9553382174180993 1.0037836584970565 0.948866451160267 1.0482384369486077 0.9711340163078975 1.0 21.358927854191005 -0.12849073391003074 7.01926216540937 1.0000009440719875 0.9939311779121711 0.0029435601513171372 0.03501406840480784 0.0 0.0 0.032095095625642805 0.007564886589705509 0.7438909343659412 0.12849073391003074 -0.006069766159816359 QS(ph)SPPRNNYSDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSSPPRNNYSDLR 13 1 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 QS(0.577)S(0.422)PPRNNYS(0.001)DLR 55.18600000000001 0.079728 593770000.0 338120.0 455940.0 493030.0 544420.0 479880.0 504390.0 515290.0 429320.0 556360.0 495460.0 True False 336299.59948866355 471115.68727844954 562444.3385064173 613343.5161793593 540989.8735283975 469522.7065063458 490363.4541010417 461358.0384427874 419252.5328420498 463839.3186153535 0.7250346962663284 1.0156872614525594 1.2125844358891742 1.3223189401241437 1.166330347205909 1.0122529239391742 1.0571838876550348 0.9946505609313735 0.9038745013975884 1.0 18.82326559361672 1.8646418218212553 1.5570620805041897 0.9544359391705659 1.0963974659544213 0.09473229768529301 0.14998182999218265 0.9001098161316934 4.103835345210843 0.11563347553626123 0.05008549917870865 73.2220395720033 -1.8646418218212553 0.14196152678385543 QS(ph)SSSRDDNMFQIGK ddPTM_BT-474_Trastuzumab_2h_R1 3 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 QS(0.818)S(0.164)S(0.007)S(0.011)RDDNMFQIGK;QS(0.62)S(0.359)S(0.02)S(0.001)RDDNMFQIGK;QS(0.641)S(0.322)S(0.036)S(0.002)RDDNMFQIGK 194.77 2.2914e-08 1690650000.0 510670.0 415720.0 459620.0 512790.0 390390.0 603090.0 541010.0 409350.0 526700.0 508820.0 True False 507920.6094607705 429556.98889195314 524330.5009113437 577709.1614224563 440103.85247718415 561399.8078211548 514839.27944109985 439897.7756371816 396901.8424184121 476346.67197728145 1.0662835269792645 0.9017738847820482 1.1007329992143848 1.212791429872757 0.9239150357665858 1.1785530178909907 1.0808079697587438 0.9234824163065881 0.8332205634415384 1.0 18.86165238390178 1.6778061429348199 4.978419115914554 0.9054313737550185 1.0657983206293922 0.3181484156685358 0.09854773187096837 0.17512843750672724 9.915757679974403 0.05227459455488747 0.025365540171144656 47.62183686248741 -1.6778061429348199 0.1603669468743737 QS(ph)SSWTR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSSSWTR 7 0 Q92934;F5H1R6 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 QS(0.535)S(0.232)S(0.232)WTR 74.173 0.052730999999999986 0.0 317020.0 381340.0 328320.0 337180.0 344410.0 428600.0 387440.0 319700.0 401910.0 383830.0 True False 315313.19954423344 394032.6713751022 374544.6021914021 379866.9534281561 388268.5720219964 398971.89081587706 368698.04703547055 343557.63740370574 302864.6658180826 359333.6407866042 0.8774942386523922 1.0965649375676032 1.042331025204042 1.0571427506664925 1.080523858473289 1.1103104344544592 1.0260604774670334 0.9560965031040128 0.8428508534716999 1.0 18.454964481093583 1.6714749647134703 3.261060150269428 0.9165841048472377 1.0493001582508892 0.3360667908757319 0.07035160240039202 0.20102108067575508 4.98661172662051 0.04038698261539853 0.0179826388958615 46.9326378806414 -1.6714749647134703 0.13271605340365145 QS(ph)STPSAPELGQQPDVNISEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSSTPSAPELGQQPDVNISEWK 22 0 Q93100-4;Q93100-2;I3L213;Q93100-3;Q93100 Q93100-4 PHKB Phosphorylase b kinase regulatory subunit beta 1 QS(0.324)S(0.324)T(0.324)PS(0.028)APELGQQPDVNISEWK 91.767 0.0014013 125710000.0 61122.0 47421.0 48357.0 44782.0 44233.0 57541.0 52287.0 55960.0 62656.0 56897.0 True False 60792.925943292605 48999.37931840017 55165.24527342114 50451.3966083981 49865.81036046849 53563.32610694441 49757.67805426291 60136.019359122256 47215.268347385674 53265.784748027545 1.1413128752513835 0.9199034530363253 1.0356600495867834 0.9471633028041765 0.9361696367819877 1.0055859753183847 0.9341395849069033 1.1289802570936331 0.8864089503371876 1.0 15.700921495557639 -3.170471104586918 9.957081073641419 0.9999998666632167 0.9966885913717131 0.0 0.08252963389519483 0.0 0.0 0.0 0.017001911131345096 0.0006753499863358448 3.170471104586918 -0.003311275291503657 QSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSAGPNSPTGGGGGGGSGGTR 21 0 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 QSAGPNS(0.776)PT(0.224)GGGGGGGSGGTR;QSAGPNS(0.983)PT(0.017)GGGGGGGSGGTR;QSAGPNS(0.986)PT(0.014)GGGGGGGSGGTR 248.16 1.8788999999999996e-30 290591000.0 296351.0 346990.0 334745.0 349492.0 370000.0 337746.0 299010.0 288464.0 281572.0 301405.0 True False 294755.4791436914 358539.35239011544 381874.1863443006 393737.65136577754 417117.3068381831 314398.41398856515 284545.74397087534 309990.6484705116 212182.35347149646 282169.07485419686 1.044605895582279 1.2706543145289073 1.353352370530412 1.3953961877970882 1.4782530901152686 1.1142199553619472 1.0084228546941458 1.0985989468572726 0.7519688455623136 1.0 18.106200354649502 2.5012934690137523 4.416160037379217 0.9924902194083648 1.3140869179183416 0.5907522837820773 0.13416816083730876 0.15784399099803276 7.393802152572027 0.04761965443647102 0.042475454983673104 317.1709982053603 -2.5012934690137523 0.32159669850997685 QSANDFFSYYDSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSANDFFSYYDSHR 14 0 Q92621 Q92621 NUP205 Nuclear pore complex protein Nup205 0 ; 140.84 9.8371e-06 572060000.0 362830.0 398820.0 375070.0 376940.0 347030.0 389570.0 372440.0 344410.0 410660.0 383450.0 False True 360876.56359420257 412094.48260821885 427876.59583311767 424660.5653514708 391222.2134920396 362639.94284913933 354423.6543410351 370111.62307854375 309458.3455620754 358977.89271193894 1.0052891025347548 1.1479661867058293 1.1919302121940594 1.1829713583288506 1.0898225808182986 1.010201324960529 0.9873133179971103 1.0310150864235506 0.8620540480201648 1.0 18.45353547431546 2.768140861906175 2.436684147939207 0.9805420054589926 1.1375227924797673 0.576536128389186 0.06332555160681735 0.22207347991274573 2.6034767722852186 0.022223471743334285 0.02254051702071206 586.328307225449 -2.768140861906175 0.15698078702077467 QSDEVGDRDHR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSDEVGDRDHR 11 1 P40222 P40222 TXLNA Alpha-taxilin 0 ;; 151.55 2.0047e-05 299703000.0 144407.0 178890.0 178821.0 178435.0 164732.0 174379.0 179165.0 158130.0 176697.0 179293.0 False True 143629.52875712587 184844.24550871158 203997.44246000441 201024.8527046472 185709.64375693956 162324.59017401258 170498.10447323477 169930.4635678698 133152.3919684946 167850.36723954018 0.8556998183516118 1.1012442126201567 1.2153529707139605 1.1976432105016699 1.1063999847668626 0.9670791481936901 1.0157743904719374 1.0123925634631534 0.7932803136407327 1.0 17.356816167945816 2.7400376080808226 9.722309395795738 0.9677479288082984 1.1080065015116647 0.2786862201628978 0.10910717786416375 0.14344430158053303 320.0348369360456 0.03534722871913232 0.035484490408495314 549.5884638531965 -2.7400376080808226 0.14025857270336628 QSDS(ph)KGKDQER ddPTM_BT-474_Trastuzumab_2h_R1 1 QSDSKGKDQER 11 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 QS(0.01)DS(0.99)KGKDQER 98.676 0.0042079 129760000.0 454740.0 240780.0 212120.0 208380.0 222910.0 235610.0 352810.0 350560.0 577540.0 321050.0 True False 452291.7303663637 248794.2167454161 241984.65221990782 234760.88663431696 251296.26720891724 219322.83526628278 335743.2324349172 376720.5673076109 435213.00563951023 300560.31413526647 1.5048285122659637 0.82776802207309 0.8051117890135129 0.7810774596431364 0.8360926422768574 0.7297132221108108 1.1170577639329213 1.253394242654633 1.4480055588564618 1.0 18.197295003384983 2.035315909132233 5.2576338498897135 1.2458000391580348 0.8957555155490131 0.28343581796870776 0.23023912929060023 0.21392013402580978 15.06200464634476 0.08996416449251908 0.06346665681970562 108.47156575941263 -2.035315909132233 -0.3500445236090217 QSETVDQNS(ph)DSDEMLAILK ddPTM_BT-474_Trastuzumab_2h_R1 3 QSETVDQNSDSDEMLAILK 19 0 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 QS(0.007)ET(0.255)VDQNS(0.634)DS(0.104)DEMLAILK;QS(0.09)ET(0.072)VDQNS(0.419)DS(0.419)DEMLAILK;QS(0.066)ET(0.055)VDQNS(0.44)DS(0.44)DEMLAILK 123.19 2.0433e-05 69267000.0 105131.0 116750.0 111574.0 120682.0 123617.0 129723.0 128884.0 127330.0 134744.0 137831.0 True False 104564.98637715208 120635.95317313474 127282.64938140682 135960.32882619582 139358.8922146368 120755.55434509549 122649.38853530759 136832.01116863897 101538.14667709603 129034.50757694407 0.8103645167537786 0.9349123380906366 0.9864233356763685 1.0536741789410236 1.080012586024992 0.9358392310141395 0.9505161901142685 1.0604295993228416 0.7869069180315832 1.0 16.977397410261347 4.6812097361599445 2.2980591251939715 0.9900834049495769 0.778988627842201 0.2935596580682954 0.07938929190034695 0.600129299952254 4.122510873666914 0.019434297114385865 0.24228654702654714 47996.51848324769 -4.6812097361599445 -0.2110947771073759 QSFCLS(ph)PNSVDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSFCLSPNSVDHR 13 0 P15622-2;P15622-3;P15622;E9PPG5;E9PL28 P15622-2 ZNF250 Zinc finger protein 250 1 QS(0.002)FCLS(0.998)PNSVDHR 89.846 0.0046778 194990000.0 63938.0 98263.0 83481.0 93399.0 88167.0 92685.0 82393.0 79803.0 83416.0 86789.0 True False 63593.76491217959 101533.62455376206 95234.39917014024 105223.3038235848 99394.54484324896 86277.90410702169 78407.33581817441 85758.30509142298 62859.244517133586 81250.05171619884 0.7826919930378443 1.2496438144853423 1.1721149360345988 1.2950552227477095 1.2233166963441164 1.0618812208069086 0.9650127496785621 1.0554861600700414 0.7736517477760734 1.0 16.310081110863194 2.439070644037878 3.304754508483363 0.9643261487334089 1.159989392753123 0.2736673014771951 0.14809441180754415 0.3283607447035654 7.464869424109036 0.053469833585202284 0.04502783161506258 274.83411726615486 -2.439070644037878 0.19566324401971413 QSFDDNDS(ph)EELEDKDSK ddPTM_BT-474_Trastuzumab_2h_R1 6 QSFDDNDSEELEDKDSK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK 294.1 2.716e-46 11176000000.0 9322020.0 5625440.0 5018920.0 4470600.0 4632940.0 7847590.0 8115400.0 7994970.0 13260700.0 7813730.0 True False 9271831.280093797 5812679.369749706 5725540.310765323 5036577.50161905 5222917.447413223 7305104.5745398225 7722827.098161406 8591595.25903505 9992778.169276323 7315051.061729192 1.267500554931471 0.7946191107483066 0.7827068139988995 0.6885225351288885 0.7139960341136138 0.9986402709830138 1.055744796993368 1.1745092667889183 1.366057199731173 1.0 22.802436504261603 2.2274579322665744 1.940933481030626 1.1897916208939907 0.8369685310745182 0.39536159390358794 0.1747135550370955 0.3201429332705441 2.422838035396777 0.08720243098146972 0.05591071922734103 168.8332312040087 -2.2274579322665744 -0.3528230898194725 QSFTMVADT(ph)PENLR ddPTM_BT-474_Trastuzumab_2h_R1 5 QSFTMVADTPENLR 14 0 Q14847;Q14847-2;C9J9W2;F6S2S5 Q14847 LASP1 LIM and SH3 domain protein 1 1 QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR 372.88 3.6633999999999994e-96 2513710000.0 2937290.0 2701560.0 2331659.0 2496609.0 2405098.0 2773753.0 2452216.0 2250626.0 3241656.0 2725802.0 True False 2921475.9570035962 2791479.7914724923 2659936.3200566554 2812679.443416912 2711372.974167299 2582009.9838222386 2333592.943705174 2418579.1405672617 2442793.314764955 2551838.9826835 1.1448512139004117 1.0939090633912127 1.0423605635413098 1.1022166612013717 1.0625172640461955 1.0118232385912576 0.9144749960874023 0.9477788986607208 0.9572678101328036 1.0 21.283105869346738 2.623274413737414 2.29616361276165 0.9491909464230602 1.0905680003396176 0.7986529452328313 0.031816318489220834 0.12558746557031317 1.3058797398233644 0.011628458560167825 0.010714089931244593 420.02429712613196 -2.623274413737414 0.14137705391655742 QSFTMVADTPENLR ddPTM_BT-474_Trastuzumab_2h_R1 12 QSFTMVADTPENLR 14 0 Q14847;Q14847-2;C9J9W2;F6S2S5 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;;;;;;;; 322.31 6.2845e-56 7143160000.0 4468548.0 4776200.0 4405426.0 4697970.0 4278270.0 4614278.0 4299103.0 4133671.0 4961169.0 4629880.0 False True 4444489.834070357 4935172.929726136 5025671.688150765 5292732.520306286 4823082.325207011 4295303.822702062 4091138.963721685 4442146.520376022 3738555.376208676 4334397.094560313 1.0253997815862812 1.138606551743909 1.1594857551141322 1.2211000526344686 1.1127458375375896 0.9909806898155886 0.9438772854605505 1.0248591496037442 0.8625318111486784 1.0 22.047399900907518 2.74103407090353 3.6151220448279733 0.9667083423801456 1.140816459735727 0.6604502574353366 0.060173191233845555 0.1452189836930798 4.175344242942085 0.019799887714524903 0.01983219928628024 550.8509096001746 -2.74103407090353 0.17410811735558152 QSFVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSFVDR 6 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 102.8 0.08196 254790000.0 265780.0 288280.0 256350.0 266400.0 268680.0 286170.0 265900.0 237440.0 317890.0 293830.0 False True 264349.07001093414 297875.22553105996 292441.85176585644 300126.21268539294 302894.80540887296 266387.74147172086 253037.40116335807 255158.97849588946 239550.26900776324 275077.51783948106 0.9609984563158397 1.0828773935094262 1.0631252385246117 1.0910604946658302 1.1011252674805085 0.9684097179732768 0.9198767065762739 0.9275893591739661 0.8708464104563812 1.0 18.069478707050187 2.5553193939310614 4.097347984519203 0.9252326888492123 1.0625624342102045 0.6382570910179097 0.04667144619247555 0.13499369356696084 4.240636397244977 0.015385925922749163 0.014129649480649244 359.1859943021877 -2.5553193939310614 0.13732974536099218 QSGLSSLVNGKS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSGLSSLVNGKSPIR 15 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 QSGLSSLVNGKS(1)PIR;QSGLSSLVNGKS(1)PIR 138.03 7.9159e-06 1036590000.0 719020.0 612050.0 627230.0 612140.0 652920.0 886900.0 805100.0 764670.0 1164930.0 926480.0 True False 715148.8762106323 632421.7142579613 715538.5320191068 689636.861235871 736065.4918399632 825590.6905380334 766154.2372193298 821733.5583155829 877848.6107622565 867351.2532005648 0.824520485295549 0.7291414083098363 0.8249697332871057 0.7951067790483731 0.8486359927697675 0.9518527672515223 0.8833263737063692 0.9474057428099049 1.0121027755744354 1.0 19.726256837695452 2.578336519584401 0.568875127041365 1.0033678026186235 0.7656148143199598 0.824926836276868 0.03709421904814301 0.338895786497513 0.22810876126244517 0.031157481840919078 0.03138249469645158 378.73594026317113 -2.578336519584401 -0.23775298829866365 QSGT(ph)PPGMGAPGVPGAAGVGGAGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSGTPPGMGAPGVPGAAGVGGAGGR 25 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 QS(0.001)GT(0.999)PPGMGAPGVPGAAGVGGAGGR;QS(0.001)GT(0.999)PPGMGAPGVPGAAGVGGAGGR 174.7 3.1011e-11 389670000.0 40466.0 43078.0 37826.0 39976.0 34937.0 46605.0 43392.0 42407.0 46667.0 44000.0 True False 40248.13555219527 44511.825188799085 43151.57201051406 45036.95750116836 39386.01986217729 43383.30604636945 41292.96318646274 45571.62567838274 35166.54315576237 41191.88232970476 0.9770890106464273 1.080597017454097 1.0475746571890965 1.0933454592020624 0.9561597488293171 1.0532003781503423 1.0024539023477712 1.1063253995926186 0.8537250828764062 1.0 15.330072433545906 1.2412273879099187 24.999994952973285 0.9268625486556109 1.042008839888965 0.3860312023792598 0.05680211133991923 60.32927027696712 565610.5596123305 0.03898214662889593 0.01277674890561605 17.427190874424564 -1.2412273879099187 0.11514629123335418 QSGTPPGMGAPGVPGAAGVGGAGGREPSTAS(ph)GGGQLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 38 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 QSGTPPGMGAPGVPGAAGVGGAGGREPST(0.001)AS(0.999)GGGQLNR;QSGTPPGMGAPGVPGAAGVGGAGGREPS(0.001)T(0.001)AS(0.998)GGGQLNR 292.6 1.990899999999999e-92 869590000.0 147398.0 164653.0 150778.0 170133.0 159672.0 154527.0 154170.0 147775.0 188808.0 178721.0 True False 146604.42554545743 170133.37557015958 172006.23181413018 191671.82035587044 180005.28274990895 143844.91220743113 146712.20811340708 158802.72088624525 142278.79829758033 167314.87276925382 0.8762187312997665 1.016845500667432 1.0280391035610221 1.1455755079239585 1.075847471122048 0.8597257961987012 0.8768629213001276 0.9491249537944676 0.8503655170798768 1.0 17.35220616797063 2.739669534492879 24.996060538991426 0.9053524617212255 1.034335504581158 0.3941847293303469 0.07499016290378517 103.52093998192373 2333481.903014538 0.024181645157001292 0.024343450101046583 549.1228735490174 -2.739669534492879 0.12898304285993245 QSHAASAAPQAS(ph)SPPDYTMAWAEYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 QSHAASAAPQAS(0.582)S(0.418)PPDYTMAWAEYYR;QSHAASAAPQAS(0.715)S(0.285)PPDYTMAWAEYYR 183.31 1.1212000000000002e-17 522590000.0 195230.0 207999.0 206260.0 188449.0 196997.0 213594.0 209382.0 172218.0 201034.0 206437.0 True False 194178.9033720922 214922.12097694917 235299.6151559412 212306.62407788855 222083.4002573015 198828.74952619334 199253.39274308513 185069.78166528424 151491.86441758703 193262.0139203922 1.0047442817815078 1.1120763807494995 1.2175161087417052 1.098542956120395 1.149131149739448 1.0288040856704213 1.0310013266505693 0.9576107477671092 0.7838677727946528 1.0 17.560198574923984 1.9774931188594436 1.3625501974312897 0.8962382327636633 1.1174413448757383 0.5768946508090589 0.07343549357282325 0.29087033413507096 1.0030689806689252 0.05146740242450843 0.023785676015506407 94.9495954878228 -1.9774931188594436 0.221203112112075 QSHAASAAPQASS(ph)PPDYTMAWAEYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 QSHAASAAPQAS(0.085)S(0.913)PPDY(0.001)TMAWAEYYR;QSHAASAAPQAS(0.036)S(0.964)PPDYTMAWAEYYR 274.91 8.648099999999998e-61 1890510000.0 281140.0 306990.0 266330.0 302150.0 267430.0 294880.0 287570.0 250950.0 293220.0 278510.0 True False 279626.37347759027 317207.9765706261 303826.9490181415 340402.15901986265 301485.62531820365 274495.63967285486 273659.1404759191 269677.16329827986 220959.85994670005 260735.25335559263 1.0724532639099393 1.2165902864620133 1.1652699245996478 1.3055471196893338 1.1562902271103146 1.052775319563311 1.0495670875111804 1.0342949786329514 0.8474491159250851 1.0 17.99222613365404 2.2439803192626737 1.104630470017565 0.9534514325180201 1.1916551345070743 0.6436888788768198 0.07210314486084772 0.3221202420440577 0.7546584055472376 0.049653550572175416 0.028169039337779724 175.3801023789892 -2.2439803192626737 0.23820370198905416 QSHSES(ph)PSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 7 QSHSESPSLQSK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QSHSES(0.999)PS(0.001)LQSK;QSHSES(1)PSLQSK;QSHSES(1)PSLQSK;QSHSES(1)PSLQSK;QSHSES(0.995)PS(0.004)LQSK;QSHSES(1)PSLQSK;QSHS(0.002)ES(0.987)PS(0.011)LQSK 265.64 1.276e-21 34939500000.0 11304400.0 9963720.0 9556700.0 9274020.0 9617180.0 11605360.0 11598340.0 9831140.0 13308240.0 11137420.0 True False 11243538.366436908 10295356.397004072 10902200.29167449 10448109.98111331 10841870.867508205 10803108.779278925 11037283.98423854 10564789.588317392 10028602.573279677 10426620.32037501 1.0783492657218496 0.9874106930781366 1.045612092575207 1.0020610380044535 1.0398259967634709 1.0361083886566969 1.0585677472757122 1.0132515871583414 0.96182677273502 1.0 23.313768263375376 1.4433173217417459 5.52659018988808 0.9818501920190182 1.0330162099211047 0.4102190067860676 0.025885566547400787 0.16995866998612344 10.444974560137421 0.01547400188380594 0.0060493566858487585 27.753472000543077 -1.4433173217417459 0.051166017902086414 QSHSESPSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSHSESPSLQSK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 120.87 0.00038631 372450000.0 368260.0 398610.0 373270.0 425050.0 408170.0 464290.0 467410.0 400860.0 560110.0 464270.0 False True 366277.3290775323 411877.4928851664 425823.1714789976 478861.28641864215 460148.03008686827 432194.72512109985 444799.5926204031 430774.20872583496 422078.39558947587 434639.89111845556 0.8427144782661196 0.947629293356588 0.9797148862319794 1.101742606244429 1.058687983983184 0.9943742715583156 1.0233749863037276 0.9911060110412943 0.9710990735418802 1.0 18.72946106514951 4.58670490982283 1.848196109104622 1.018577228614555 0.8183085470242011 0.6832157800954635 0.03664019152514288 0.3652117116535434 1.6366921344569696 0.010329979925807845 0.1139814846829272 38610.45413589866 -4.58670490982283 -0.20026868159035383 QSHSGS(ph)IS(ph)PYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 QSHSGS(1)IS(1)PYPK;QSHS(0.002)GS(0.997)IS(1)PYPK 180.56 2.8179e-05 832040000.0 2250850.0 1820580.0 1488090.0 1777620.0 1600400.0 2225860.0 2015800.0 1803760.0 2884660.0 2145550.0 True False 2238731.6736929445 1881176.9047361487 1697600.1372898496 2002666.5097365142 1804201.4536860199 2071991.5373108431 1918288.0528961918 1938365.7305076884 2173774.1954636364 2008619.1621022278 1.1145625392470517 0.9365523043040684 0.845157792636577 0.9970364454954798 0.8982297330060998 1.0315502193767232 0.9550282547780261 0.9650240160404464 1.0822231692684625 1.0 20.937772621683106 1.2617205776666756 23.292443891767963 1.0411114860873083 0.9630633501631344 0.14115784375118479 0.07145160226979767 161.3713632717711 162296.17707958585 0.04594668367989421 0.016746169192595854 18.26924406276764 -1.2617205776666756 -0.07804813592417392 QSHSGSIS(ph)PYPK ddPTM_BT-474_Trastuzumab_2h_R1 8 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGS(0.025)IS(0.975)PYPK;QSHSGSIS(1)PYPK;QSHSGS(0.226)IS(0.774)PYPK;QSHSGS(0.007)IS(0.993)PYPK 210.63 4.335e-08 42448320000.0 23991270.0 20276410.0 18833120.0 18352400.0 18340140.0 24821940.0 23245070.0 20222980.0 30931850.0 22139890.0 True False 23862103.668000653 20951298.049501345 21484659.59558644 20675811.95828602 20675648.118473608 23106057.712361768 22120617.15930933 21732121.45781168 23309110.03305478 20726903.265286554 1.1512623647916058 1.010826257127885 1.0365590711068247 0.9975350245839136 0.9975271198906598 1.1147858132314357 1.0672417811857584 1.0484982334147652 1.124582371747395 1.0 24.30500124869818 2.7442954188612423 24.990625096709927 1.0715240471661345 1.0347805504741179 0.08474948486885792 0.05222165726900325 1161.0480867111812 5059514.021939313 0.01570423022544941 0.016211634506528447 555.0031127236273 -2.7442954188612423 -0.0367434966920166 QSHSS(ph)S(ph)SPHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSHSSSSPHPK 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 QSHS(0.078)S(0.909)S(0.783)S(0.23)PHPK;QS(0.025)HS(0.11)S(0.804)S(0.637)S(0.424)PHPK 114.64 0.00064977 1456440000.0 3664540.0 2987650.0 2690190.0 2714150.0 3062200.0 2425660.0 3377220.0 2171940.0 4612010.0 3468370.0 True False 3644810.523808668 3087092.1241774354 3068945.36844934 3057761.1117119337 3452153.0189186027 2257979.833589451 3213850.9663667413 2334021.1916878456 3475441.933267781 3247015.657179046 1.122510917294196 0.950747532538679 0.9451587834706007 0.941714310786067 1.0631772012820464 0.6954015847127596 0.9897861007417754 0.7188204302395034 1.0703496072104526 1.0 21.630682910671336 2.787755132303291 24.999928760673516 0.8724884438508712 0.9948637042288035 0.15125764861599234 0.12342726333564727 606.7426970776961 308336.62158090307 0.03528575306827737 0.03742613798666119 613.4160460662823 -2.787755132303291 0.12237526037793234 QSHSS(ph)SS(ph)PHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSHSSSSPHPK 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 QS(0.02)HS(0.144)S(0.804)S(0.335)S(0.697)PHPK 62.055 0.044051 236110000.0 621850.0 479810.0 436240.0 457430.0 488410.0 382650.0 572680.0 362000.0 724190.0 602130.0 True False 618502.0286940294 495780.18579872977 497658.80013394577 515340.5910986451 550606.1184671267 356198.30616121175 544977.2805499507 389014.2781987537 545723.0781488322 563701.5478905719 1.097215416577312 0.8795082923827144 0.8828409323980664 0.914208224240472 0.9767688602728704 0.6318916587938099 0.9667833671724172 0.6901068121144681 0.9681064034522933 1.0 19.10457200347525 7.905829877656352 1.0060351306256439 0.8531966408943318 199.998915191809 0.20776861023069548 0.11965909757910842 1904.239298177486 3.1182110519572803 0.0341086193564661 873472.4810960385 80506301.91945705 -7.905829877656352 199.14571855091467 QSHSSS(ph)SPHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSHSSSSPHPK 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QS(0.003)HS(0.01)S(0.055)S(0.466)S(0.466)PHPK 74.76899999999998 0.025713 360560000.0 129510.0 181550.0 201140.0 208280.0 206910.0 158980.0 234700.0 167620.0 224290.0 233900.0 True False 128812.73254991381 187592.78200070752 229458.76365977863 234648.22664457033 233258.76204834724 147990.08679866546 223346.66435893252 180128.65555711344 169016.7348320214 218972.3017481351 0.5882603942213475 0.8566963972296335 1.0478894445915137 1.071588619982019 1.065243230244913 0.6758392984738575 1.0199767850813792 0.8226093168820039 0.77186353471512 1.0 17.740388866373674 -0.09562900408234268 8.110443237081721 0.999999997344762 0.8906568481853446 0.04355553399166856 0.16190993528385025 21269580.70975804 2622492.0795034976 0.15634711263892984 0.0379197447436267 0.8023631892010071 0.09562900408234268 -0.10934314915941734 QSHSSSS(ph)PHPK ddPTM_BT-474_Trastuzumab_2h_R1 5 QSHSSSSPHPK 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QSHS(0.002)S(0.017)S(0.152)S(0.829)PHPK;QSHSS(0.007)S(0.056)S(0.937)PHPK;QSHSS(0.001)S(0.026)S(0.973)PHPK;QS(0.006)HS(0.003)S(0.024)S(0.136)S(0.832)PHPK;QSHS(0.001)S(0.004)S(0.119)S(0.875)PHPK 131.86 0.00012531 2852106000.0 2427118.0 3412749.0 3896879.0 4071206.0 4194202.0 3146022.0 4729108.0 3131913.0 4422544.0 4588271.0 True False 2414050.6663661622 3526340.2874146677 4445525.69092053 4586620.26216984 4728308.763717084 2928544.9040792002 4500342.979093072 3365632.2515919725 3332667.2902534576 4295443.616563564 0.5620026432327957 0.820949033952355 1.0349398310754767 1.067787328061641 1.1007730948869539 0.6817793842727917 1.0477015602624604 0.7835354277760354 0.7758610257162808 1.0 22.034375704265713 4.6578726843715925 3.2352497989886038 0.9286236787076186 0.5393819815011439 0.4066831725338348 0.136496353090557 0.28630666206941574 4.83668739864036 0.03405167058930668 0.24591080114762384 45485.46976432039 -4.6578726843715925 -0.3892416972064747 QSIAIDDCTFHQCVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSIAIDDCTFHQCVR 15 0 A0A087WY71;Q96CW1-2;Q96CW1;E9PFW3;C9JJ47 A0A087WY71 AP2M1 AP-2 complex subunit mu 0 ; 214.82 2.4236e-12 1022610000.0 593540.0 596530.0 571920.0 577810.0 515670.0 616400.0 506600.0 552340.0 663000.0 602030.0 False True 590344.4465884934 616385.1404400008 652441.3647822451 650960.6867558063 581337.5178844478 573789.7188495249 482093.8226000647 593558.4155256889 499612.5337448395 563607.9299761864 1.0474381483834636 1.0936417102329352 1.157615658122149 1.154988516189456 1.0314573074034117 1.0180653754707971 0.8553709005131176 1.05314063900905 0.8864540528483146 1.0 19.104332384978672 2.8706719974122743 2.3178098516581085 0.9612921384728838 1.1137106619670922 0.5659118996485142 0.062136120790345896 0.2222703395788602 2.347628022415357 0.020537549208209577 0.022170436081520854 742.4581816769353 -2.8706719974122743 0.15241852349420848 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMK 34 2 P10809;E7EXB4;E7ESH4 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 240.39 2.5587999999999997e-47 351860000.0 473870.0 333431.0 352940.0 288858.0 379360.0 747820.0 400320.0 383300.0 750070.0 513040.0 False True 471318.73657190637 344529.04927170393 402630.88419052545 325427.393182722 427669.2473571165 696124.9635789288 380954.9922290921 411903.79235796223 565225.2989230655 480297.34796435747 0.9813061399766101 0.7173244881153731 0.8382950393063682 0.677554008078495 0.8904260020791402 1.449362497064189 0.7931648880504801 0.8576016380347146 1.176823693319686 1.0 18.873568316971678 2.993431795911943 24.905324020871138 1.0252198953921543 0.7979398802085842 0.2887400422640669 0.18485276075689053 420.4740585813531 1594363.476190053 0.05566679869842975 0.06431300945452781 984.9899422056591 -2.993431795911943 -0.2272800151835701 QSLEDFPEWER ddPTM_BT-474_Trastuzumab_2h_R1 2 QSLEDFPEWER 11 0 Q86W56-3;Q86W56-2;Q86W56;Q86W56-5;Q86W56-4 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 0 ; 155.97 7.277600000000001e-05 46253000.0 57049.0 61919.0 61621.0 60168.0 63944.0 61814.0 66339.0 62454.0 71281.0 69267.0 False True 56741.85452273974 63979.936484174046 70296.70118066634 67785.26263083596 72086.8893742183 57540.94367450443 63129.92913040999 67114.63461498616 53714.75266646452 64846.3207575378 0.87502041534321 0.9866394228193271 1.0840507273112328 1.0453216441421087 1.111657354374093 0.8873432293815346 0.9735313953501626 1.0349798389631026 0.8283392494588163 1.0 15.984737100897132 2.728546664864627 24.995747520046727 0.956684884967464 1.023560029325042 0.1730405163359936 0.08055554433773846 1468.9064266657272 3666519.6305771912 0.026603296764510866 0.025377806303541098 535.237661872926 -2.728546664864627 0.06687514435757802 QSLS(ph)SIDKNPSER ddPTM_BT-474_Trastuzumab_2h_R1 3 QSLSSIDKNPSER 13 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 QSLS(0.5)S(0.5)IDKNPSER;QS(0.01)LS(0.614)S(0.376)IDKNPSER;QS(0.009)LS(0.587)S(0.403)IDKNPSER 130.39 8.635e-05 1143880000.0 955140.0 779340.0 707080.0 680930.0 741110.0 988010.0 981670.0 859780.0 1215650.0 956600.0 True False 949997.6323660302 805279.860779022 806630.717950464 767135.6681826744 835485.9655968796 919711.1942253726 934182.8717564279 923941.1494743769 916069.3463754377 895548.9690135369 1.0607992027643887 0.8992024876831158 0.9007109000850976 0.8566094035345583 0.932931636912253 1.026980350654025 1.0431399109145834 1.0317036604844898 1.0229137412602958 1.0 19.772412796007554 2.755267606964719 5.214091291954688 1.0291767106742713 0.9219279696963696 0.46379980389262654 0.05064248642198306 0.15186779787997617 13.135273811965643 0.016050587844462748 0.01638354770583824 569.2035590995603 -2.755267606964719 -0.10724874097790171 QSLSS(ph)IDKNPSER ddPTM_BT-474_Trastuzumab_2h_R1 1 QSLSSIDKNPSER 13 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 QSLS(0.381)S(0.618)IDKNPSER 161.91 2.5042e-05 424090000.0 266310.0 208070.0 205250.0 186100.0 191010.0 323300.0 252760.0 241140.0 378830.0 274660.0 True False 264876.2165498227 214995.48416902873 234147.41593501822 209660.24091873737 215333.99129503084 300951.03196633887 240533.03316303305 259135.0912841089 285472.42256192694 257130.96365174363 1.0301218211454657 0.8361322227229588 0.9106154023991674 0.8153830948290605 0.8374487002144078 1.170419259089873 0.9354495069244531 1.0077941901819325 1.1102218826845327 1.0 17.97214382407578 2.763656869836076 24.997599822515085 1.0330174782534822 0.8806241279700264 0.47997013124065957 0.08211865935987872 685.4441283210143 682748.7765841478 0.024380269826997175 0.025849041908005296 580.3057446726378 -2.763656869836076 -0.1523933502834558 QSMDMS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSMDMSPIK 9 0 Q14562;F5H658 Q14562 DHX8 ATP-dependent RNA helicase DHX8 1 QSMDMS(1)PIK;QSMDMS(1)PIK 106.11 0.0031356 621070000.0 1338740.0 1200380.0 1585740.0 1017640.0 557030.0 921410.0 1275020.0 826740.0 2468500.0 1077830.0 True False 1331532.3725879956 1240333.9226549675 1808998.4085008327 1146473.1196590199 627964.4687245217 857715.0954658362 1213342.4115506008 888435.5369006561 1860171.2512053382 1009041.9666233123 1.319600588114164 1.2292193622091432 1.7927880785320736 1.136199640432807 0.6223373154894245 0.8500291601707303 1.2024697204725443 0.8804743175090555 1.8435023643568265 1.0 19.944554747514992 3.495850630187079 24.579088532695035 1.0337456365122566 1.4319193259391325 0.20683214758328605 0.3310199723668656 892.1812897436423 1170832.1697630917 0.0872974299633127 0.13265684651548118 3132.2082576498597 -3.495850630187079 0.3981736894268759 QSNASS(ph)DVEVEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 QSNASSDVEVEEK 13 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 QSNAS(0.01)S(0.99)DVEVEEK;QSNAS(0.008)S(0.992)DVEVEEK;QSNAS(0.002)S(0.998)DVEVEEK;QSNAS(0.091)S(0.909)DVEVEEK 335.58 1.4083999999999995e-62 2027400000.0 5476320.0 4394870.0 3876830.0 3606440.0 3807360.0 5737850.0 5093160.0 4903720.0 6388740.0 5056240.0 True False 5446836.10159635 4541150.59119498 4422653.965989563 4063014.934223374 4292204.728009255 5341205.93494605 4846784.393039377 5269660.48698561 4814320.631730026 4733546.434335142 1.150688215940443 0.9593548207862493 0.9343214495392932 0.8583447929763577 0.9067629920930781 1.1283729882109539 1.0239224353822443 1.1132584332038498 1.01706420302735 1.0 22.174490043819926 2.743583977765326 24.991124073417406 1.064826884416887 0.9544687708743113 0.2508949442947984 0.08061527222552616 534.3423249215062 2658342.216404701 0.025393527717796707 0.026187216933086406 554.0946766242118 -2.743583977765326 -0.11035811354257585 QSPAS(ph)PPPLGGGAPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 QSPASPPPLGGGAPVR 16 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 QS(0.019)PAS(0.981)PPPLGGGAPVR;QS(0.008)PAS(0.992)PPPLGGGAPVR;QS(0.071)PAS(0.929)PPPLGGGAPVR;QS(0.368)PAS(0.632)PPPLGGGAPVR 195.25 8.7113e-11 2308420000.0 1753270.0 1900160.0 1954890.0 2060880.0 1819990.0 2012020.0 1943540.0 1715400.0 1821350.0 1884810.0 True False 1743830.5891266079 1963405.6769290238 2230121.519791515 2321787.1966932123 2051754.9385741202 1872933.7931856278 1849523.545156201 1843411.8586247037 1372502.6973396153 1764519.8121329742 0.9882748706678692 1.1127138745785086 1.2638687899433192 1.3158181510507418 1.1627837355330868 1.061441067596516 1.0481738614883975 1.044710207246902 0.7778335430989105 1.0 20.75084419819813 1.9311713831939963 1.1715606596878732 0.9146349960086362 1.1722981518415514 0.47351024481684334 0.10414329539863819 0.4364088374499095 1.104382363782006 0.08543397318084918 0.03780679533553164 85.34368345624178 -1.9311713831939963 0.2576631558329152 QSPGHQS(ph)PLASPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSPGHQSPLASPK 13 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 QS(0.05)PGHQS(0.95)PLASPK 79.48899999999998 0.013121 171690000.0 220950.0 203960.0 206560.0 183750.0 197300.0 247410.0 257310.0 247860.0 270670.0 274950.0 True False 219760.42974985272 210748.68530357623 235641.85254829426 207012.73115968783 222424.98551127952 230307.1290404945 244862.93228034495 266356.5718075773 203967.0052921807 257402.45560346192 0.8537619784342767 0.8187516502493762 0.9154607790972644 0.8042375923507065 0.8641136891636089 0.894735555263277 0.951284367922136 1.0347864443760766 0.7924050484055967 1.0 17.97366629128229 2.445432212464474 2.637142295878335 0.9570171669825387 0.8507664469123295 0.3063638075812041 0.0652295699500561 0.3042498001841258 4.318349771505436 0.024296158005841135 0.02017402685822413 278.8895313265092 -2.445432212464474 -0.10625072007020919 QSPGSTS(ph)PKPPHTLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 QSPGSTSPKPPHTLSR 16 1 O43159;E9PPY3 O43159 RRP8 Ribosomal RNA-processing protein 8 1 QS(0.001)PGS(0.177)T(0.177)S(0.642)PKPPHT(0.002)LS(0.001)R;QS(0.001)PGS(0.06)T(0.178)S(0.76)PKPPHTLSR;QS(0.001)PGS(0.207)T(0.207)S(0.585)PKPPHTLSR;QSPGS(0.034)T(0.055)S(0.912)PKPPHTLSR 104.35 0.00082857 1459510000.0 907460.0 749540.0 691880.0 673820.0 686934.0 914570.0 825460.0 761970.0 1141990.0 905770.0 True False 902574.336188284 774487.9857935021 789290.6900712324 759125.5429116797 774410.9731231902 851347.9285662074 785529.3462365768 818832.070605261 860561.866382006 847962.9831312896 1.0644029918090645 0.9133511735778077 0.9308079547960963 0.8952342944363466 0.9132603527851034 1.0039918551897373 0.9263722141924605 0.9656460091943444 1.0148578222178901 1.0 19.693641761373225 1.3845605312149982 3.932826132085347 1.0069134219764486 0.9461138827334805 0.18169659879307842 0.04781299357247337 0.35346779740399253 8.777875164427945 0.035140489491822996 0.011964714162654393 24.2415581566137 -1.3845605312149982 -0.060799539242968104 QSPS(ph)PS(ph)TRPIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 QS(0.041)PS(0.963)PS(0.971)T(0.026)RPIR;QS(0.288)PS(0.734)PS(0.916)T(0.061)RPIR;QS(0.401)PS(0.752)PS(0.717)T(0.13)RPIR 140.33 0.00046211 3337350000.0 2256650.0 2177220.0 1806060.0 2180970.0 2228020.0 2552910.0 2455670.0 2262920.0 2604700.0 2500060.0 True False 2244500.447137385 2249687.4515427193 2060337.5494450643 2457080.5783801074 2511745.140490836 2376433.3406037306 2336879.860529613 2431790.5812749257 1962806.586191834 2340504.0303909476 0.9589816629209024 0.961197854107921 0.8802965184814976 1.049808309011836 1.0731642021873746 1.015351099483807 0.9984515429948955 1.0390029453906686 0.8386255954722605 1.0 21.15838781872355 3.7313120268846243 24.96844456936178 1.0087273475681242 0.936262595549055 0.19181924900091962 0.06339300714610253 824.5020221301934 2840075.517318892 0.016645359516773425 0.02640098378065573 5386.566513341886 -3.7313120268846243 -0.07246475201906921 QSPS(ph)PSTRPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 QS(0.192)PS(0.807)PSTRPIR 104.9 0.0015366 539070000.0 443870.0 518650.0 479450.0 546990.0 495340.0 573980.0 526240.0 487790.0 519340.0 481720.0 True False 441480.25323859305 535912.9517194539 546952.3925458929 616238.8779158512 558418.6128897986 534302.1136035859 500783.76076797914 524191.3667474309 391355.61579946516 450976.21717875835 0.9789435372012062 1.188339720156525 1.2128187068656249 1.366455379334529 1.2382440395264838 1.1847678286586867 1.1104438364861224 1.1623481389477606 0.867796573060391 1.0 18.78269182751176 1.3154659345872206 5.425587620786254 0.9354510266012658 1.1876631646085762 0.5066441865906036 0.09701597723981947 0.15514516285619934 7.40060852324827 0.0723890789378262 0.025145505307392717 20.67597196311948 -1.3154659345872206 0.25221213800731046 QSQEGAGLPSHHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSQEGAGLPSHHGR 14 0 Q92754;A2A2R7 Q92754 TFAP2C Transcription factor AP-2 gamma 0 92.935 0.0027535 55013000.0 9463.7 15322.0 15208.0 19616.0 18572.0 17432.0 17331.0 11406.0 11916.0 17917.0 False True 9412.74849071591 15831.983507655408 17349.154209694327 22099.383588726207 20937.034115131704 16226.966870514154 16492.633319150664 12257.17363849443 8979.461466219476 16773.52172048457 0.5611670970217688 0.9438675891372703 1.0343179267182019 1.3175160206063024 1.248219334259571 0.9674156173594161 0.9832540592241359 0.7307453880436704 0.5353354898186563 1.0 14.033898004365206 1.7823924124639483 3.5718023937310672 0.7219364686844416 1.0305240615923665 0.21409209392326378 0.21771018827945526 0.30937209969030255 7.5540265610782695 0.12135379364502699 0.06168077132325357 60.5888085607619 -1.7823924124639483 0.3085875929079249 QSQQPMKPIS(ph)PVKDPVS(ph)PASQK ddPTM_BT-474_Trastuzumab_2h_R1 5 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 QSQQPMKPIS(1)PVKDPVS(1)PASQK;QSQQPMKPIS(1)PVKDPVS(0.998)PAS(0.002)QK;QSQQPMKPIS(1)PVKDPVS(0.997)PAS(0.003)QK;QSQQPMKPIS(1)PVKDPVS(1)PASQK;QSQQPMKPIS(1)PVKDPVS(1)PASQK 171.19 3.3785e-12 2708150000.0 4047240.0 1932950.0 1949520.0 1795900.0 1696900.0 3231070.0 3024560.0 2986680.0 5224040.0 2977650.0 True False 4025450.109530635 1997287.0722570524 2223995.4704683926 2023260.755862226 1912990.156685711 3007713.7360206638 2878250.4778587716 3209561.2276537432 3936645.3405496147 2787613.82770558 1.4440486948093127 0.7164862838627016 0.7978133299399335 0.7258038167817258 0.6862464727620643 1.0789563841761551 1.0325140624760758 1.1513650835544387 1.4121917826005965 1.0 21.410599285680348 2.227411184180878 1.7220765444905937 1.192107497176941 0.8594198414675852 0.237311127377553 0.22972846081440648 0.4819899340730253 2.8409635597824363 0.1201468536781869 0.07401245127710912 168.81505872906894 -2.227411184180878 -0.33268765570935577 QSQQPMKPIS(ph)PVKDPVSPASQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 QSQQPMKPIS(1)PVKDPVSPASQK 184.4 2.0434e-17 924860000.0 2537100.0 1380800.0 1427100.0 1239800.0 1175000.0 2136200.0 2037700.0 2051700.0 3389600.0 2025800.0 True False 2523440.535498309 1426759.0932887746 1628023.275424434 1396758.552880443 1324629.2852293637 1988529.522073904 1939128.66623007 2204808.2723215017 2554278.498312987 1896511.7096253608 1.3305694463636042 0.7523070308754478 0.8584303841424927 0.7364882303607607 0.6984556322570941 1.0485195066191921 1.0224712330477135 1.1625597991994694 1.346829806190631 1.0 20.854916848610575 2.190020665277621 1.792419830342805 1.178293591678769 0.8652854404810083 0.292220394904959 0.18819952331075884 0.4078412599902621 2.5864315244053064 0.09878015305001567 0.059385225094875524 154.88903188747344 -2.190020665277621 -0.3130081511977606 QSQQPMKPISPVKDPVS(ph)PASQK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 QSQQPMKPISPVKDPVS(0.999)PAS(0.001)QK 86.98200000000001 0.0015152000000000002 665550000.0 1774200.0 1116700.0 1126900.0 1002900.0 983510.0 1439800.0 1350700.0 1392500.0 2048900.0 1458700.0 True False 1764647.90433215 1153868.684440595 1285557.72480961 1129867.037170345 1108754.168779518 1340270.0149246382 1285361.4808249276 1496415.4209717242 1543976.0488533971 1365604.5171440982 1.29221006680805 0.8449508404187852 0.9413836207118802 0.8273749998522608 0.8119145439693376 0.9814481411701521 0.941239915867455 1.095789741601904 1.130617268374543 1.0 20.381108304954346 1.7542150767410674 5.502324908643575 1.0845496695238586 0.9352055647404864 0.15601117401798026 0.13195294001531585 0.26945333404586364 19.88857194156374 0.06433667672555138 0.03394163979800722 56.78257415492451 -1.7542150767410674 -0.14934410478337212 QSRPANKQS(ph)PSPSEVSQSPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSRPANKQSPSPSEVSQSPGR 21 2 A0A5F9ZH11;P55201-3;P55201;P55201-2;P55201-4;A0A5F9ZHX4;A0A5F9ZHW9;C9JHC0 A0A5F9ZH11 BRPF1 Peregrin 1 QS(0.03)RPANKQS(0.95)PS(0.02)PSEVSQSPGR;QS(0.007)RPANKQS(0.992)PS(0.001)PSEVSQSPGR 188.22 1.3544e-17 122993000.0 87831.0 90386.0 91354.0 89077.0 97234.0 110080.0 108763.0 106935.0 135694.0 109402.0 True False 87358.12765494155 93394.44337050925 104215.84913679739 100354.13906672936 109616.17354892945 102470.42870044739 103501.71817499195 114915.03270492732 102254.03190644403 102419.87069623542 0.852941202337922 0.9118781612945552 1.0175354492087636 0.9798307533932281 1.0702627605734572 1.0004936347201796 1.0105628670628297 1.121999392537323 0.9983807947748415 1.0 16.64413611725354 4.801765952033744 0.8198961831408355 1.042900913930197 0.7134079451480345 0.6617265019761354 0.04108951956632674 1.493499215140726 0.7213871416452478 0.014438018891153495 0.45904225259154635 63352.820116524854 -4.801765952033744 -0.3294929687821625 QSS(ph)FEPEFVISPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSSFEPEFVISPR 13 0 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 RMI1 RecQ-mediated genome instability protein 1 1 QS(0.001)S(0.999)FEPEFVISPR;QS(0.015)S(0.985)FEPEFVISPR 205.33 7.4161e-08 142569000.0 256569.0 217344.0 230038.0 244530.0 248861.0 242627.0 207781.0 211776.0 264728.0 255946.0 True False 255187.6610114956 224578.16365277753 262425.35087386036 275487.4729277743 280551.9732352896 225854.76657252366 197729.83922949884 227579.80049673852 199489.33157345996 239611.3071536051 1.0650067563293462 0.937260291764151 1.0952127175936237 1.1497265141630835 1.1708628301728645 0.9425880992658553 0.8252108031894432 0.9497874002700814 0.8325539138500482 1.0 17.87033646432282 2.5643658360810555 6.152908505040842 0.8986564507208022 1.0790418493703857 0.5739567699226744 0.0753165108574774 0.17720555891983825 10.172315937710222 0.025499559534507162 0.02388538959560635 366.7463802395053 -2.5643658360810555 0.18038539864958347 QSS(ph)PSGSEQLVR ddPTM_BT-474_Trastuzumab_2h_R1 6 QSSPSGSEQLVR 12 0 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;O15231-2;H7BZT5;O15231-9;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 1 QSS(0.994)PS(0.006)GSEQLVR;QS(0.033)S(0.967)PSGSEQLVR;QS(0.008)S(0.98)PS(0.004)GS(0.008)EQLVR;QSS(0.825)PS(0.016)GS(0.159)EQLVR;QS(0.002)S(0.988)PS(0.003)GS(0.007)EQLVR;QS(0.003)S(0.957)PS(0.014)GS(0.025)EQLVR 279.41 5.8944e-28 2687610000.0 2524690.0 2607150.0 2387380.0 2487090.0 2343000.0 2803700.0 2812280.0 2317410.0 2692900.0 2821940.0 True False 2511097.349559429 2693927.4116945467 2723502.3525210437 2801955.338992919 2641367.161950977 2609886.8181998897 2676239.272447123 2490346.9017695435 2029270.87801128 2641841.3732156176 0.950510267201604 1.0197158084535298 1.030910629280527 1.060606956723678 0.9998204997205933 0.9879044384194675 1.0130204256698565 0.9426557275610848 0.768127450264463 1.0 21.333112413295144 1.5397771259404545 4.2581786590511825 0.8758021824627801 1.0102460125871924 0.41708854496014425 0.05898898498085086 0.13691420338912838 5.487625396511683 0.03358051776969926 0.014195277406947966 34.65589554368545 -1.5397771259404545 0.1344438301244123 QSS(ph)SEQCSDGEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSSSEQCSDGEGR 13 0 O60343-2;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 QS(0.013)S(0.86)S(0.127)EQCSDGEGR;QS(0.011)S(0.984)S(0.005)EQCSDGEGR 133.9 5.746000000000001e-06 0.0 77615.0 84979.0 75251.0 89123.0 80941.0 69258.0 81875.0 69104.0 85368.0 88945.0 True False 77197.12946383719 87807.4746441096 85845.68670658265 100405.96266201306 91248.35657510631 64470.35747579553 77914.39345712663 74260.89138300183 64330.200272593494 83268.45395035428 0.9270873398209496 1.0545106877625174 1.0309508899704678 1.2058103387133425 1.0958334428727325 0.7742470817848207 0.935701214094598 0.8918250292875274 0.772563884889084 1.0 16.34548241716641 2.752584996699707 24.923036881378124 0.8753403336141304 1.0685472331707033 0.519820243281754 0.09024698246398835 610.5762403326501 1085067.773874862 0.027542660486147143 0.029079621690210444 565.698460308516 -2.752584996699707 0.1932068995565729 QSS(ph)SSRDDNMFQIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 QS(0.086)S(0.884)S(0.029)S(0.001)RDDNMFQIGK;QS(0.03)S(0.938)S(0.03)S(0.001)RDDNMFQIGK 199.61 1.5536e-09 841720000.0 306060.0 287470.0 295640.0 285990.0 274380.0 387200.0 379670.0 296800.0 375010.0 338270.0 True False 304412.2069664625 297038.26517071563 337263.5422510541 322196.3046767847 309320.666622326 360433.77537075954 361303.91161975276 318948.7231198625 282593.81037654966 316681.31899248244 0.9612572283548206 0.9379721737794293 1.0649934872194347 1.0174149384682625 0.9767569100900102 1.1381592590225245 1.1409069305674124 1.0071598922683338 0.8923602164965658 1.0 18.27267223983952 4.24573035548926 24.970619401174563 1.0358282056507007 0.9496146659409668 0.1686079542918557 0.07010846115988394 271.90639761297695 946966.2761597373 0.01787341359412717 0.04681063493562055 17608.82411269699 -4.24573035548926 -0.08621353970973389 QSS(ph)SWTR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSSSWTR 7 0 Q92934;F5H1R6 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 QS(0.076)S(0.462)S(0.462)WTR;QS(0.065)S(0.468)S(0.468)WTR 82.287 0.026118 995640000.0 1404590.0 1471600.0 1480870.0 1506190.0 1387300.0 1526870.0 1577320.0 1439380.0 1695830.0 1660360.0 True False 1397027.8435046184 1520581.3163990136 1689363.6240472137 1696873.499566861 1563964.431828679 1421321.0707653721 1501019.0056524551 1546793.8446235426 1277915.4194577867 1554394.4032942886 0.898760212043895 0.978246777765274 1.0868307428712298 1.0916621264015174 1.006156756942838 0.9143889528636433 0.9656616123110628 0.9951102766102106 0.8221307389871263 1.0 20.567921180845072 2.867848436541487 6.095719364531377 0.9462920727691626 1.0202252869097586 0.21111388140633536 0.06940490119865816 0.40110410803962093 18.23553689322613 0.02208922213249671 0.023509019593344387 737.6467555149328 -2.867848436541487 0.07393321414059595 QSSFEPEFVIS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSSFEPEFVISPR 13 0 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 RMI1 RecQ-mediated genome instability protein 1 1 QSSFEPEFVIS(1)PR 157.74 5.0155e-05 32020000.0 39382.0 48790.0 37795.0 38091.0 38136.0 41811.0 44617.0 39707.0 41160.0 45567.0 True False 39169.971687751524 50413.9456558222 43116.20747997088 42913.31669444176 42992.39355021878 38920.70398250731 42458.7052565083 42670.13796806055 31016.669515743015 42658.87504812861 0.9182138920344046 1.1817926656280588 1.0107206866408525 1.005964565310878 1.0078182676339658 0.9123706131161728 0.9953076636129181 1.0002640229007267 0.7270859693498569 1.0 15.380558300598647 2.8126777255698596 0.7410086846372701 0.9190626495954368 1.051943840981605 0.20319202170743 0.09628533424696273 1.1057423631088235 1.3264560417650193 0.06366129904937522 0.06793125494824648 649.6474312661178 -2.8126777255698596 0.13288119138616827 QSSGPGASSGTSGDHGELVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 QSSGPGASSGTSGDHGELVVR 21 0 P29692-3;E9PL71;E9PN91 P29692-3 EEF1D Elongation factor 1-delta 0 152.63 8.8487e-13 0.0 130130.0 115340.0 108850.0 90518.0 117840.0 141710.0 130500.0 122680.0 184230.0 116000.0 False True 129429.39453880225 119179.02217549756 124175.13385883918 101977.56951898025 132846.22550759846 131913.92124945833 124187.2164415879 131835.0045564175 138828.9850555233 108596.78068740343 1.191834543524505 1.0974452596210489 1.1434513350471978 0.9390478140647961 1.2232980081610083 1.214712999910867 1.1435625960134272 1.2139863053206472 1.2783895082041474 1.0 16.72862181003618 QSSLAEPVS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 5 QSSLAEPVSPSK 12 0 E7EMD6;O43572 E7EMD6 AKAP10 A-kinase anchor protein 10, mitochondrial 1 QSSLAEPVS(0.938)PS(0.062)K;QSSLAEPVS(0.999)PS(0.001)K;QSSLAEPVS(0.999)PS(0.001)K;QSSLAEPVS(0.999)PS(0.001)K;QSSLAEPVS(0.991)PS(0.009)K 284.44 2.8074e-28 2264200000.0 5111650.0 4135840.0 3931488.0 3618815.0 3778020.0 4740710.0 4544390.0 4127330.0 5792460.0 4404720.0 True False 5084129.4443577025 4273498.934231924 4485007.3372937115 4076956.607954541 4259128.452921065 4412995.87613097 4324560.49444435 4435332.322757078 4364985.847987385 4123606.9985294873 1.2329325869731877 1.0363497141594458 1.0876417997382153 0.9886869940342079 1.0328647842628809 1.0701785785368687 1.0487324558296958 1.0755953039023252 1.058535852117812 1.0 21.975475412144196 4.740787197805822 24.953005521093047 1.0481533962382474 1.2329326525690862 0.7773762089361338 0.030222018362540768 89.47070968250806 1002618.4140702329 0.007054784323557996 0.04736702838828573 55053.786941239356 -4.740787197805822 0.1847792563308388 QSSLAEPVS(ph)PSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QSSLAEPVSPSKK 13 1 E7EMD6;O43572 E7EMD6 AKAP10 A-kinase anchor protein 10, mitochondrial 1 QSSLAEPVS(0.966)PS(0.034)KK 84.829 0.0058584 213690000.0 298170.0 186290.0 175310.0 146320.0 156010.0 224080.0 205530.0 203280.0 340020.0 224630.0 True False 296564.6858498011 192490.55003531702 199992.12417816374 164844.09699747222 175876.9487562835 208589.87702758182 195587.72869915402 218449.78583492455 256226.6270345707 210293.92108458173 1.4102389851322457 0.9153405340608772 0.9510123885023071 0.7838747603701333 0.8363387198698174 0.9918968458612053 0.930068390424311 1.038783169329286 1.2184214632220134 1.0 17.6820476214733 1.5176835794450974 4.720140988665154 1.1156877923940178 0.9599219676375899 0.09038249722629754 0.16654940562794693 0.33751946542877037 16.492604303163354 0.10005252583707834 0.04255020818572627 32.936965086515926 -1.5176835794450974 -0.15576582475642797 QSTGSAPQGPAYHGVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 QSTGSAPQGPAYHGVNR 17 0 O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497 ARID1A AT-rich interactive domain-containing protein 1A 0 ; 103.39 0.0019243 143750000.0 56346.0 49312.0 48554.0 50284.0 48468.0 53713.0 52021.0 47046.0 58154.0 53021.0 False True 56042.639396629114 50953.32011026654 55389.98116106647 56649.94924426535 54640.11250765686 49999.94673680164 49504.54549048161 50556.811414747426 43822.72592367635 49637.154386438124 1.1290461769891689 1.0265157368527158 1.1158975941658762 1.1412811621558883 1.1007905909003044 1.0073088869587303 0.9973284347663421 1.0185275936881784 0.8828613659539195 1.0 15.599132790137618 2.651609419983437 3.1102724093178735 0.9827478388622932 1.1020698702415197 0.6519163491233106 0.044710595592727144 0.17817759263719551 3.3445650616981473 0.015555748614898467 0.014728650151656333 448.34199500566746 -2.651609419983437 0.11932203137922648 QSTIVCHNR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSTIVCHNR 9 0 Q16531;F5GY55 Q16531 DDB1 DNA damage-binding protein 1 0 ;; 116.3 0.0013354 990140000.0 804250.0 808460.0 925210.0 795410.0 692444.0 872680.0 768160.0 673968.0 978790.0 835260.0 False True 799920.0073605746 835369.10237561 1055471.5259305155 896108.8244447744 780622.6389628612 812353.6856677548 731001.1661438339 724262.9145001589 737580.3196140451 781952.9916979369 1.0229771045745653 1.0683111532851677 1.3497889734249358 1.1459881015340307 0.9982986793973548 1.0388779048006527 0.9348402959064509 0.9262230878194999 0.9432540414129745 1.0 19.576722354753663 3.172138113073323 3.405333245203241 0.9626729189833 1.1571314021573746 0.4982095441534208 0.08527459861999878 0.20035313411753006 4.674712521690579 0.027074836740390188 0.0340710102989804 1486.4082703842985 -3.172138113073323 0.19445848317407466 QSVEHFTK ddPTM_BT-474_Trastuzumab_2h_R1 2 QSVEHFTK 8 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;C9IZ80 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 0 ; 87.30799999999998 0.015416 393560000.0 727280.0 818400.0 841870.0 779880.0 742740.0 969010.0 963880.0 819320.0 1058800.0 917230.0 False True 723364.405288404 845639.9492667535 960397.9783347826 878612.7280371032 837323.5364351128 902024.6195041833 917253.4420208266 880461.8188226591 797872.927193117 858691.5961198888 0.8424030333556557 0.9848005419965551 1.1184434349590324 1.0231994024481323 0.9751155597873201 1.050464012434849 1.0681989274910308 1.0253527841673797 0.9291728611278031 1.0 19.711780546849557 4.688836604998653 3.7664637997841766 1.0272352362200918 0.8317840362968139 0.5484986029825352 0.04895553714136899 0.16068569811647754 4.142012634013067 0.011737698761389286 0.0786282119465828 48846.854780859874 -4.688836604998653 -0.19545119992327797 QSVENDIHGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 QSVENDIHGLR 11 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;; 194.29 5.7816e-07 1983360000.0 1837040.0 1944110.0 2168790.0 2150830.0 1361850.0 1578690.0 1693070.0 1407580.0 1176150.0 1553320.0 False True 1827149.5807543297 2008818.526110689 2474136.7805393846 2423124.8574704328 1535273.5251826453 1469558.8761365293 1611169.7359445149 1512620.7671464146 886303.5921025551 1454185.7877358429 1.2564760267662833 1.3814043178336968 1.7013897408470744 1.6663103696283688 1.0557616077193654 1.0105716123279007 1.1079531580714284 1.0401839846760947 0.6094844273526587 1.0 20.47178017002753 3.154043191189026 6.0024694572525235 0.9827397780287016 1.5057410510888214 0.6909926171724707 0.17414699268758888 0.12643946986100665 7.084390571626145 0.053156032501268456 0.06412881175671903 1425.7493793063911 -3.154043191189026 0.5230012730601198 QT(ph)SKGEDVGYVASEITMSDEER ddPTM_BT-474_Trastuzumab_2h_R1 1 QTSKGEDVGYVASEITMSDEER 22 1 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 QT(0.5)S(0.5)KGEDVGYVASEITMSDEER 97.047 0.0022176 45157000.0 19869.0 17720.0 16258.0 18670.0 15434.0 17210.0 17778.0 16460.0 30896.0 26679.0 True False 19762.027511653418 18309.79948803381 18546.98508293073 21033.620085721766 17399.428415514914 16020.31320798236 16918.010221444834 17688.32878218642 23282.09478518942 24976.32337895895 0.791230447004131 0.7330862597438466 0.7425826772628772 0.8421423668561773 0.6966368969330725 0.6414199946449488 0.677361914512095 0.708203866269916 0.932166613633902 1.0 14.608273501278044 1.1500043472070323 4.273614700763923 0.9936013243277286 0.7257625590321141 0.7565047636775919 0.0542489847399968 0.10389767390805428 3.199862047214026 0.05554378038254789 0.014420394587672266 14.125516839317633 -1.1500043472070323 -0.26783876529561457 QTDDLRGEIAVLEATVQNNQDER ddPTM_BT-474_Trastuzumab_2h_R1 4 QTDDLRGEIAVLEATVQNNQDER 23 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 ;;; 266.19 3.8118e-44 213176000.0 106493.0 142726.0 146004.0 152864.0 149710.0 147014.0 150941.0 135124.0 156131.0 142805.0 False True 105919.6535204847 147476.54863031118 166560.09411048196 172216.56672650078 168774.68109930927 136851.26821373132 143639.407179385 145207.63902576914 117654.60709821363 133691.06263848857 0.7922717602065892 1.1031144918722031 1.2458581061688014 1.2881681342618114 1.2624230653001063 1.0236381214486132 1.0744129363964856 1.0861432032926712 0.8800484099401708 1.0 17.028543497698255 1.5657717838780543 1.4437358089297019 0.9487016521268331 1.135733899008422 0.168384214382585 0.1403531273384295 0.6779414336109711 2.7357401266676096 0.12649439929857945 0.043873551569762546 36.79355774557416 -1.5657717838780543 0.18703224688158893 QTDFEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 QTDFEHR 7 0 Q01813;Q01813-2;B1APP6 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 ; 120.15 0.0046207 1322090000.0 1864900.0 2123800.0 1955810.0 1958000.0 1980690.0 2328600.0 2250200.0 1859200.0 2313200.0 2258300.0 False True 1854859.585609869 2194489.399135791 2231171.0477947295 2205882.599241737 2232919.131030596 2167629.362934791 2141349.2294012373 1997942.944826305 1743142.8552919535 2114173.3605720955 0.8773450750074459 1.0379893343003632 1.0553396847224366 1.0433782963970488 1.0561665247860128 1.0252845879905659 1.0128541345454225 0.9450232332346016 0.8245032729105332 1.0 21.011662250767145 1.6283122315483098 3.593990015498283 0.9052522432232071 1.0211314316614213 0.31262850372178397 0.06298876707239175 0.19047772315712747 5.7959624389748985 0.03661620653073802 0.016023429437531246 42.492494957569896 -1.6283122315483098 0.11587918843821421 QTDLELS(ph)PLTK ddPTM_BT-474_Trastuzumab_2h_R1 4 QTDLELSPLTK 11 0 J3KTC5;Q8WVK7 J3KTC5 SKA2 Spindle and kinetochore-associated protein 2 1 QTDLELS(1)PLTK;QTDLELS(0.994)PLT(0.006)K;QTDLELS(0.998)PLT(0.002)K;QTDLELS(0.997)PLT(0.003)K 112.42 0.0016028 210368000.0 570535.0 531031.0 513597.0 487483.0 497713.0 642732.0 595213.0 546892.0 726058.0 649234.0 True False 567463.3029523978 548706.0458199811 585906.9933348486 549198.2978172422 561093.8003739262 598301.4496683852 566420.2732555317 587703.8581013065 547130.7345787502 607799.330282808 0.9336359464041497 0.9027750089238649 0.9639809788244205 0.903584901223404 0.9231563320625085 0.9843733282660849 0.931919870645427 0.9669373242445806 0.9001831810577533 1.0 19.21323555963232 2.8479905599437085 21.13577612508072 0.9536632806755893 0.9250950085949078 0.2075454951026534 0.03024740610959636 13.640915126437823 2615.2156700563346 0.008581087337925033 0.00910165269573687 704.6777515495477 -2.8479905599437085 -0.028568272080681467 QTDPST(ph)PQQESSKPLGGIQPSSQTIQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 QTDPSTPQQESSKPLGGIQPSSQTIQPK 28 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 QTDPS(0.127)T(0.865)PQQES(0.007)S(0.001)KPLGGIQPSSQTIQPK;QTDPS(0.028)T(0.971)PQQESSKPLGGIQPSSQTIQPK;QT(0.002)DPS(0.104)T(0.894)PQQESSKPLGGIQPSSQTIQPK;QTDPS(0.003)T(0.997)PQQESSKPLGGIQPSSQTIQPK 321.01 6.432699999999998e-83 3788700000.0 2598060.0 2000920.0 2147740.0 1889620.0 2068970.0 2834640.0 2700500.0 2666700.0 3314480.0 2742130.0 True False 2584072.3336316026 2067519.4126183183 2450123.1235092646 2128845.698252894 2332441.0657540397 2638688.008824815 2569866.4980881843 2865702.6952282186 2497670.815756557 2567124.915744397 1.0066017114255974 0.8053832518776335 0.9544230233918302 0.8292723447918335 0.9085810555804974 1.0278767475012671 1.0010679582933315 1.1163082394832518 0.9729447914428037 1.0 21.291722068174895 2.745715390575553 4.1297905195584965 1.0372902613869168 0.8930904255389724 0.46960997754568445 0.06443765901989451 0.16006250024218782 6.648402461597674 0.019639604012553984 0.019767910212006173 556.8207238821971 -2.745715390575553 -0.14419983584794438 QTDVGITHFR ddPTM_BT-474_Trastuzumab_2h_R1 4 QTDVGITHFR 10 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;; 143.79 3.3354e-05 2243030000.0 1961950.0 2257380.0 2135320.0 2217500.0 2166110.0 2234010.0 2050640.0 1895440.0 2336610.0 2257590.0 False True 1951387.079193135 2332515.5286849714 2435954.495465837 2498235.272634604 2441951.2689601537 2079578.1469938809 1951442.7089944684 2036887.3576492995 1760783.7744698795 2113508.6733799577 0.9232926761887591 1.1036224066943499 1.152564229400686 1.1820321837806254 1.1554015839712384 0.9839458778601488 0.9233189972547826 0.9637468647771745 0.8331093203672569 1.0 21.011208602211724 2.5716355643492017 4.160873019908894 0.9325570165576195 1.1098630068394852 0.5318368353972599 0.07729063645948032 0.18333665469225977 5.607362638237597 0.026643718572032803 0.024634924490939188 372.9370785068355 -2.5716355643492017 0.17730599028186578 QTELKR ddPTM_BT-474_Trastuzumab_2h_R1 2 QTELKR 6 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2;H0YAW6 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ; 124.89 0.02912 699530000.0 825500.0 833140.0 743890.0 758070.0 833570.0 825710.0 882060.0 872140.0 1148690.0 954780.0 False True 821055.5997216711 860870.561256234 848623.2459922079 854041.5842733312 939720.198543524 768630.6112122679 839391.38800358 937223.5154371855 865610.7411574059 893845.1229717167 0.9185658439260189 0.9631093118169577 0.9494074803147527 0.9554693115446523 1.0513232934798469 0.8599147564366015 0.9390792279683785 1.0485300991756281 0.9684124451891156 1.0 19.769665350949044 1.756767164955345 24.99999997816556 1.009316323480411 0.9496088537370214 0.23074460301927313 0.047937136516022084 10.467244113728485 14387.547025985315 0.02187242592896764 0.012129834348649842 57.117233622940894 -1.756767164955345 -0.059707469743389585 QTEPVS(ph)PVLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 QTEPVSPVLKR 11 1 Q8IYH5-2;Q8IYH5;Q8IYH5-4 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 1 QTEPVS(1)PVLKR 97.065 0.0040085 414460000.0 402780.0 286850.0 262950.0 221530.0 227300.0 371580.0 344620.0 304250.0 577830.0 377120.0 True False 400611.47723306465 296397.6288455131 299971.0743976276 249575.67528601718 256245.30768734883 345893.5492052341 327949.41402375523 326954.67995019536 435431.53902531014 353051.87873132457 1.1347099431183973 0.8395299577801544 0.8496515454769981 0.7069093533303256 0.7258007197360183 0.9797244259064317 0.9288986513886461 0.9260811219163929 1.2333358502155916 1.0 18.429520668384054 1.407981907731998 4.538841503008251 1.1153182201952467 0.8731810553533632 0.3427666889699823 0.12750283028644963 0.22744047462759495 7.710087818426324 0.09195712991614714 0.03292542112331196 25.584793010306132 -1.407981907731998 -0.24213716484188352 QTFLSHGDDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 QTFLSHGDDFR 11 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 0 ;;; 156.8 3.0893000000000004e-05 1263300000.0 1675420.0 1857960.0 1682670.0 1812350.0 1606870.0 1721510.0 1600940.0 1499000.0 1857800.0 1761820.0 False True 1666399.724876663 1919801.0754394636 1919575.3099701703 2041793.3241755664 1811495.369835329 1602506.065698648 1523496.4160152925 1610862.9917677671 1399970.083244591 1649379.1392300106 1.0103193894246767 1.1639537749554028 1.1638168958935038 1.2379163017235375 1.0982892451768247 0.9715813833117566 0.9236787223624735 0.9766480934879387 0.8487860977180464 1.0 20.65349163542236 2.7662047816471738 3.1537825399158925 0.9405123554433467 1.1485666161055192 0.6897087183795918 0.06460921261277171 0.14133169371430823 2.8769985270506266 0.021105881345006502 0.021487533697007632 583.720279362672 -2.7662047816471738 0.20805426066217259 QTFPFPTIYEGEKQHES(ph)EEPFMPEER ddPTM_BT-474_Trastuzumab_2h_R1 1 QTFPFPTIYEGEKQHESEEPFMPEER 26 1 H7BZ15;Q9BSF0 H7BZ15 C2orf88 Small membrane A-kinase anchor protein 1 QT(0.003)FPFPT(0.003)IYEGEKQHES(0.993)EEPFMPEER 60.541 0.031212 1810100000.0 1731600.0 741090.0 536040.0 455620.0 544930.0 1046600.0 969050.0 1045600.0 2325600.0 863610.0 True False 1722277.2579988465 765756.7326516346 611509.7726567955 513301.4452842291 614323.6054468406 974251.0054313964 922173.3493695087 1123627.9814492166 1752487.041443441 808493.6704262801 2.1302297358627085 0.9471400465607698 0.756356907945087 0.6348861643079899 0.7598372478574101 1.2050199538577964 1.1406067642846118 1.389779564825512 2.167595252192189 1.0 19.624876953540372 1.64012841272452 3.1608451749260076 1.6290493647338484 1.0349272718966536 0.14999047835770762 0.4748998882294137 0.3212644142370591 7.573869354849483 0.294407795516656 0.12590676372684553 43.66449208598753 -1.64012841272452 -0.5941220928371949 QTGIVLNRPVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 QTGIVLNRPVLR 12 1 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 SF3B2 Splicing factor 3B subunit 2 0 62.162 0.07271 855340000.0 995220.0 1175800.0 979560.0 936210.0 902830.0 1043200.0 1035900.0 885100.0 1465600.0 1035500.0 False True 989861.8460993366 1214935.7922138907 1117473.5335118482 1054734.0900082265 1017800.0490073434 971086.0394286577 985789.559477709 951150.6564467328 1104422.5180338428 969413.5034638479 1.0210935194965038 1.2532688969905597 1.1527315531699955 1.088012583112899 1.0499132159502664 1.001725307063326 1.0168927459286952 0.981160931891438 1.1392687579527097 1.0 19.886752653129122 3.411918073231494 2.2062713372311364 1.0230335918842575 1.1524995245792158 0.3562785567440966 0.06646334218197812 0.2865618476750681 2.8224836785205376 0.0191066801073923 0.029371296887106473 2581.7731103501574 -3.411918073231494 0.12946593269495832 QTIDNSQGAYQEAFDISKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QTIDNSQGAYQEAFDISKK 19 1 P27348 P27348 YWHAQ 14-3-3 protein theta 0 226.72 2.3021e-19 372180000.0 368290.0 280960.0 284290.0 255590.0 282960.0 346550.0 363200.0 333850.0 523660.0 417610.0 False True 366307.1675608655 290311.5837560933 324315.5609070227 287947.6677937669 318993.2787646819 322593.8141909519 345630.62844126293 358763.58225594985 394611.0096844996 390957.7722660908 0.9369481656232486 0.7425650654631405 0.8295411523019663 0.73651859157256 0.8159277072705721 0.8251372323949873 0.8840612796566233 0.9176530247153415 1.0093443273866476 1.0 18.576653263472537 1.6953295376105426 1.208368481257177 1.0092069812958586 0.8058144575979326 0.6636728651050549 0.0531196012749857 0.2446686422628816 0.6740351501429508 0.04225525981607294 0.016090882824711245 49.58262753234447 -1.6953295376105426 -0.20339252369792604 QTLENER ddPTM_BT-474_Trastuzumab_2h_R1 2 QTLENER 7 0 P35579 P35579 MYH9 Myosin-9 0 ; 118.74 0.011488 363740000.0 380350.0 450770.0 428550.0 431380.0 366850.0 395460.0 402870.0 348510.0 395180.0 419980.0 False True 378302.2378608581 465773.6069537809 488886.11497662426 485992.6637696117 413566.1730096961 368122.7810127076 383381.6389871456 374517.58589792205 297793.18414070265 393176.5168370322 0.9621689537924785 1.1846424875543609 1.2434265375499594 1.236067371671261 1.0518587842852152 0.9362786566556082 0.9750878360470687 0.9525431195911324 0.7574032817024394 1.0 18.58481763117512 2.9322024602465198 3.115019973339059 0.9279711541062615 1.164323657229332 0.5668274959896371 0.09537970229677373 0.19010641060677286 3.620212379026854 0.030711945505181595 0.03407179232409128 855.4654224768656 -2.9322024602465198 0.23635250312307055 QTLPS(ph)SPTTTK ddPTM_BT-474_Trastuzumab_2h_R1 2 QTLPSSPTTTK 11 0 F8VW64;F8VWX1;F8W659;J3KQU3;P51513-2;P51513 F8VW64 NOVA1 RNA-binding protein Nova-1 1 QTLPS(0.467)S(0.405)PT(0.042)T(0.075)T(0.011)K;QTLPS(0.589)S(0.408)PT(0.002)T(0.001)TK 132.06 0.00019972 235130000.0 701210.0 587010.0 524040.0 494070.0 495260.0 684810.0 639780.0 590250.0 796330.0 683920.0 True False 697434.7632717546 606548.272994961 597820.2769626653 556619.2113418613 558328.4253639963 637470.6965693425 608831.3972030585 634297.4522287691 600085.1417753075 640271.6400666295 1.0892794864366888 0.9473295942513413 0.9336978862603589 0.8693485335129587 0.8720180473804746 0.9956253825376437 0.9508954623379864 0.9906692918067732 0.9372352361458021 1.0 19.28832458366403 -0.23988881350002722 8.180056467529134 1.0000008004729597 0.9522036841380332 0.049427994656469076 0.06003459165847815 0.0 0.0 0.05878751456387988 0.0138563500657408 0.5755872782453515 0.23988881350002722 -0.04779711633492645 QTLPSS(ph)PTTTK ddPTM_BT-474_Trastuzumab_2h_R1 1 QTLPSSPTTTK 11 0 F8VW64;F8VWX1;F8W659;J3KQU3;P51513-2;P51513 F8VW64 NOVA1 RNA-binding protein Nova-1 1 QTLPS(0.178)S(0.815)PT(0.004)T(0.001)T(0.001)K 122.52 0.00040812 193980000.0 414910.0 354330.0 345920.0 334680.0 362670.0 439730.0 469920.0 390310.0 533820.0 443630.0 True False 412676.17066083505 366123.65985299146 394622.5292094598 377050.45368448674 408853.8747864965 409332.5001130784 447188.1743312721 419436.91415402136 402267.2138215239 415317.15358924854 0.993641045390036 0.8815519818742913 0.9501715154287707 0.9078614991602109 0.9844377272961274 0.985590160617134 1.0767389944445787 1.0099195531154181 0.9685783752129075 1.0 18.66385393417706 2.9538392545511307 2.3782756627577073 1.0153298213158692 0.9310621314579989 0.4511626159407597 0.038233505849293366 0.23936547376372094 2.6952971469517837 0.012166475284871742 0.013799304476762333 899.1647120296277 -2.9538392545511307 -0.08426768985787036 QTNPSAMEVEEDDPVPEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 QTNPSAMEVEEDDPVPEIR 19 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 173.44 1.4920000000000002e-11 761720000.0 347340.0 424820.0 371860.0 410230.0 391870.0 449390.0 436310.0 395750.0 482160.0 473740.0 False True 345469.9600331018 438959.8768908867 424214.65573493746 462165.0759381707 441772.321704537 418324.7270502727 415204.01843394106 425282.8745777809 363338.12861298927 443505.50761078106 0.7789530323855303 0.9897506780820328 0.956503692637853 1.0420729123025125 0.9960920757995072 0.9432232968285775 0.9361868371617218 0.9589122734209824 0.8192415254780863 1.0 18.75859249497989 -0.22236108410380914 7.621546753498627 0.9999999972064559 0.9442225717266415 0.05044902362593462 0.0759634191443803 0.0 0.0 0.0705035458526831 0.01661784512337631 0.5992926010870173 0.22236108410380914 -0.05577742547981446 QTPMAS(ph)SPRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 QTPMASSPRPK 11 1 Q5SSJ5;Q5SSJ5-2;Q5SWC8;B0QZK4 Q5SSJ5 HP1BP3 Heterochromatin protein 1-binding protein 3 1 QTPMAS(0.5)S(0.5)PRPK 93.478 0.0055834 382780000.0 281270.0 223470.0 229960.0 214420.0 196210.0 270770.0 270720.0 240440.0 412140.0 268200.0 True False 279755.6735720349 230908.06385953212 262336.3691518482 241565.5500150221 221196.18047221584 252052.30722401966 257624.23934917038 258382.8537295811 310573.61939305905 251083.2463824276 1.1141949038922974 0.9196474364037557 1.0448182940580624 0.9620934630066517 0.8809675024486084 1.0038595201215301 1.0260510928585818 1.029072458845125 1.2369348567368013 1.0 17.93780624192572 1.47029988771946 4.480754332082596 1.1239940852408021 0.9892864081821482 0.2611732643634458 0.08156744056698341 0.21270446925622497 8.722804440671997 0.05040775542139849 0.019700444999271555 29.532477905360228 -1.47029988771946 -0.13470767705865394 QTPS(ph)PDVVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 QTPSPDVVLR 10 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3;D6RJ93;D6R8Y0;Q9UPQ0-7;Q6NVB9 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 QT(0.041)PS(0.959)PDVVLR;QT(0.19)PS(0.81)PDVVLR;QT(0.032)PS(0.968)PDVVLR 145.62 3.1589e-05 1105580000.0 936020.0 954150.0 896430.0 955600.0 919360.0 1021620.0 1005540.0 892050.0 1026670.0 958990.0 True False 930980.5723215974 985908.3059541446 1022639.5520907607 1076578.8620201256 1036435.0465263564 950997.814034801 956898.1886641713 958619.3007381166 773660.9351731746 897786.4371673532 1.0369733087737174 1.098154600179558 1.1390677222941095 1.1991480573229514 1.1544338426368521 1.0592695263200202 1.0658416623928115 1.0677587241824458 0.8617427298347115 1.0 19.776012776104395 1.4186232334107554 3.7156223791549485 0.9323719079928873 1.1098750182572306 0.6000190212680873 0.056155454769662265 0.15258305211896805 3.6468749516290666 0.043503935959096504 0.01510877489261597 26.219429235908066 -1.4186232334107554 0.1775031102643433 QTPSLPEPKPVYAQVGQPDVDLPVS(ph)PSDGVLPNSTHEDGILRPSMK ddPTM_BT-474_Trastuzumab_2h_R1 1 QTPSLPEPKPVYAQVGQPDVDLPVSPSDGVLPNSTHEDGILRPSMK 46 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 QTPSLPEPKPVYAQVGQPDVDLPVS(0.937)PS(0.058)DGVLPNS(0.002)T(0.003)HEDGILRPS(0.001)MK 74.779 0.00024837 388240000.0 116500.0 127780.0 151310.0 134740.0 108590.0 147720.0 150880.0 114740.0 152690.0 131690.0 True False 115872.77694436691 132033.080055359 172613.13278990315 151798.07018479647 122418.29283664396 137508.46409547667 143581.35798242764 123302.48143791434 115061.59544117603 123285.43145451877 0.9398740433261454 1.0709544387981262 1.4001097352170266 1.2312733823768651 0.9929664145418942 1.1153666939650118 1.1646255059373845 1.000138296822215 0.9332943404884251 1.0 16.911642802076116 1.6371132448430865 4.4359776488808 0.9669842736614532 1.1366301317202254 0.25280198101574114 0.12074560716932634 0.23438226383894734 10.478904196872568 0.07262257520756184 0.033572616271181674 43.3623933640656 -1.6371132448430865 0.1696458580587722 QTQT(ph)PDLLPEALEAQVLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 QTQTPDLLPEALEAQVLPR 19 0 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-2;Q9ULV3;A0A494C0L7;Q9ULV3-3;Q9ULV3-4 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 QT(0.016)QT(0.984)PDLLPEALEAQVLPR;QT(0.025)QT(0.975)PDLLPEALEAQVLPR;QTQT(1)PDLLPEALEAQVLPR;QT(0.008)QT(0.992)PDLLPEALEAQVLPR 204.47 5.1067e-15 135561000.0 89117.0 96306.0 89978.0 89497.0 90388.0 101330.0 106884.0 83029.0 94425.0 93753.0 True False 88637.20397382941 99511.48699179356 102646.12029720382 100827.31102366574 101898.37602835057 94325.29560516274 101713.61258346894 89225.04559271912 71155.2239801757 87769.6032740185 1.0098849791664462 1.1337807541537661 1.1694950924722824 1.1487725506617685 1.1609756934894846 1.0746920583732984 1.1588705974426814 1.0165825327266969 0.8107046326508691 1.0 16.421433765794518 1.5078533449438676 4.130972655842015 0.904744896765851 1.1243015858485195 0.6560452987998515 0.06287725712646658 0.09858349665611223 3.6149550703684863 0.03817475761503539 0.015382510296057023 32.19981265896776 -1.5078533449438676 0.21955668908266845 QTS(ph)IETDR ddPTM_BT-474_Trastuzumab_2h_R1 4 QTSIETDR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 QT(0.003)S(0.997)IETDR;QT(0.055)S(0.945)IETDR;QT(0.014)S(0.986)IETDR;QT(0.018)S(0.982)IETDR 162.68 0.00035695 1075710000.0 1816410.0 1950850.0 1900960.0 2114160.0 2108480.0 2121610.0 1933110.0 1630320.0 2014630.0 1951060.0 True False 1806630.6503821213 2015782.8629362707 2168598.644559478 2381812.439230292 2376982.430059922 1974948.0944327381 1839598.0841026704 1751982.7569972167 1518151.4311589252 1826541.6804134974 0.9890990552009365 1.1036062765783325 1.1872702757423772 1.304001143128084 1.3013567965893964 1.0812499466125756 1.0071481553523691 0.9591802781092836 0.8311616687636945 1.0 20.80068324469931 2.226081392172232 2.161318321588132 0.9326335322339193 1.1801089021703504 0.5601356521997747 0.09555938946441352 0.2481270439828046 2.3472096686529773 0.04875681547807898 0.03235463435194194 168.29894446112942 -2.226081392172232 0.24747536993643104 QTSDGNWLMVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QTSDGNWLMVHR 12 0 O75131;A0A087WYQ3 O75131 CPNE3 Copine-3 0 118.76 0.00059107 239990000.0 209870.0 224400.0 255860.0 233360.0 220270.0 295000.0 206690.0 199640.0 321370.0 234100.0 False True 208740.08323874886 231869.01834733534 291882.86402501253 262903.35207306023 248320.0788574229 274607.34435530455 196691.61506752376 214538.1505513792 242172.6696373747 219159.5375769066 0.952457216996539 1.0579919126995274 1.3318282528433707 1.1995980415901508 1.133056227453863 1.2530020248785223 0.8974814294746425 0.9789131375407029 1.105006299588456 1.0 17.74162193913326 2.2380480095453508 24.99999953484187 0.988587585041207 1.159376156189665 0.3431385174503645 0.10769764865065233 15.607466483396086 761123.4222374096 0.04064172746365729 0.031869535582141416 173.00075941740386 -2.2380480095453508 0.1707885711484579 QTTVSNSQQAYQEAFEISKK ddPTM_BT-474_Trastuzumab_2h_R1 1 QTTVSNSQQAYQEAFEISKK 20 1 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 253.83 6.585e-36 558170000.0 166370.0 191870.0 152480.0 169710.0 161390.0 197680.0 226680.0 186520.0 270010.0 240750.0 False True 165474.28240544477 198256.27696213548 173947.85862008078 191195.26859924165 181942.0598665253 184014.84688866677 215714.6223983079 200439.06952936895 203469.65344863405 225385.1288835553 0.7341845632190608 0.8796333544462205 0.7717805495053337 0.8483047197759983 0.8072496209833135 0.816446265998932 0.9570934136908223 0.8893180775601451 0.9027643237001505 1.0 17.78203280275207 1.75569424997493 0.332241693325183 1.0095377929607499 0.7736083945761513 0.6494577618377241 0.04606139062330792 0.8300646239508603 0.2916460841251374 0.0661342245261564 0.06757753148554832 56.97630090883927 -1.75569424997493 -0.2359293983845986 QTVEHCQYRPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 QTVEHCQYRPPR 12 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 0 ;; 160.52 4.0756e-05 216630000.0 206247.0 238599.0 228252.0 237674.0 224862.0 215322.0 246663.0 210308.0 255999.0 232372.0 False True 205136.58906819596 246540.62347885896 260387.89759805 267763.50403073546 253496.8428385066 200437.2969534676 234730.96834583455 226002.2508823852 192911.4766608529 217541.82001632164 0.9429754198655002 1.13330220120601 1.1969555903251785 1.2308599055144698 1.1652786706458893 0.9213736326120158 1.079015374277108 1.0388910549035069 0.8867788117538927 1.0 17.730933244274304 2.75292826442225 24.8688485921741 0.9996626277549518 1.1427351775046692 0.408524436383496 0.08826932867557946 817.3167626721539 1414685.5258110128 0.02792279853429948 0.02949018405702237 566.1457669012894 -2.75292826442225 0.1430725497497174 QTWPHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 QTWPHWK 7 0 E9PDF6;O43795;O43795-2 E9PDF6 MYO1B Unconventional myosin-Ib 0 65.24600000000001 0.071105 663640000.0 634070.0 679960.0 651590.0 612950.0 596780.0 740460.0 730240.0 677060.0 843150.0 744680.0 False True 630656.2375718004 702592.0575554997 743328.2082781908 690549.4071528199 672776.3956078126 689273.743055352 694915.5014122999 727585.6552410166 635366.9801311642 697153.8848473765 0.9046155393796105 1.0078005341809344 1.0662326129630948 0.9905265138183911 0.9650328431506902 0.9886966967217724 0.996789254877972 1.043651439165834 0.9113726451804268 1.0 19.411117616042752 2.198668893597981 9.942866005909403 0.9973660430585196 0.9908335622983885 0.0 0.04860167304216519 5.402644933195369 1297.153607891122 0.0184936828249559 0.01370490769273366 158.0042954150169 -2.198668893597981 -0.006532480760131132 QVAGDAPVEQATAETAS(ph)PVHR ddPTM_BT-474_Trastuzumab_2h_R1 3 QVAGDAPVEQATAETASPVHR 21 0 Q92766;Q92766-2;A0A087X055;Q92766-4 Q92766 RREB1 Ras-responsive element-binding protein 1 1 QVAGDAPVEQATAET(0.087)AS(0.913)PVHR;QVAGDAPVEQATAET(0.003)AS(0.997)PVHR;QVAGDAPVEQATAET(0.001)AS(0.999)PVHR 274.76 6.079799999999998e-45 4057570000.0 813940.0 1411560.0 1357810.0 1409970.0 1307890.0 1548500.0 1402470.0 1375940.0 1522780.0 1370550.0 True False 809557.8374772347 1458542.9212939613 1548977.8457039085 1588472.057432519 1474442.0390286236 1441455.839776913 1334627.1681443208 1478619.62968175 1147511.2732065876 1283080.3256131096 0.6309486797643741 1.136751060848048 1.2072337286940642 1.2380145075277968 1.1491424267019863 1.1234338263959622 1.0401742911197551 1.1523983340444437 0.8943409467823136 1.0 20.291180060668516 4.739971110857272 24.82011225639312 1.1171632168573986 0.6309485045661278 0.6791806522508623 0.09731865334714151 61.0644292612949 1074416.2036958905 0.022874420370218248 0.14352361499287788 54950.43197741924 -4.739971110857272 -0.4862147122912708 QVAPEKPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 QVAPEKPVKK 10 2 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 ; 74.76 0.023075 9040300000.0 8786920.0 7306310.0 7021430.0 6996440.0 7641270.0 10295750.0 9901170.0 9188200.0 13962500.0 9820070.0 False True 8739612.199038586 7549496.111592331 8009986.312636375 7882188.586638836 8614340.441144329 9584029.036088575 9422212.580957524 9873870.14073423 10521628.962914513 9193344.725215085 0.9506455441693574 0.8211914528654537 0.8712809703161627 0.8573798570850857 0.9370191914502357 1.0424964278563316 1.0248949498341677 1.0740237025652515 1.1444832405834051 1.0 23.13215840805088 2.821289510013237 1.8690319710746217 1.0670664125053293 0.8694671365523466 0.7766090357022795 0.04640924836951399 0.14664346756296373 1.015961594411734 0.01638186291010655 0.017063680218196098 662.6580985935079 -2.821289510013237 -0.19759927595298266 QVAPESHWPELR ddPTM_BT-474_Trastuzumab_2h_R1 4 QVAPESHWPELR 12 0 P53602;H3BP35 P53602 MVD Diphosphomevalonate decarboxylase 0 ;;; 152.99 6.5832e-05 1805250000.0 1250550.0 1387440.0 1260480.0 1450360.0 1332660.0 1457590.0 1382660.0 1298990.0 1530730.0 1418020.0 False True 1243817.1777491663 1433620.1016748084 1437944.6277114358 1633975.4272912391 1502366.3517053323 1356830.234097792 1315775.4535258696 1395927.2299375655 1153502.1022311307 1327520.7495719986 0.9369474474505811 1.0799229331345797 1.0831805289484466 1.23084737305842 1.1317083760760087 1.0220783626434788 0.9911524576546802 1.0515294999250457 0.868914555650469 1.0 20.34030298031268 2.5635278623098086 4.381317718157939 0.9913170454673765 1.0985389106355576 0.3082026049968758 0.08004658829720547 0.31244928659618737 10.676369363550787 0.027959593383630982 0.02584920388433279 366.0394231881363 -2.5635278623098086 0.10722186516818111 QVDDLEVWSHTNDTIGSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QVDDLEVWSHTNDTIGSVR 19 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 ; 324.35 2.1636999999999996e-62 557160000.0 455330.0 567720.0 502320.0 534360.0 524050.0 563820.0 551400.0 549560.0 562450.0 622950.0 False True 452878.5538719184 586616.2170060134 573042.2897562899 602009.9212108342 590784.6612122962 524844.4504895188 524726.6754474452 590570.9578091357 423841.7339438695 583192.7976656719 0.7765503203822847 1.0058701330915683 0.982594936100015 1.0322656994744808 1.0130177594390946 0.8999501581471818 0.8997482094219146 1.0126513224665945 0.7267609196141789 1.0 19.153613377167197 2.7185781104938154 24.279863751784774 0.9165879130964213 0.9695348568435264 0.06431474663725811 0.0986611405968015 1760.9421877574425 2139639.854874003 0.03120496535342083 0.02945788452572132 523.0920389945724 -2.7185781104938154 0.05294694374710507 QVDEGVWPPPNNLLSQS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVDEGVWPPPNNLLSQSPK 19 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;Q9C0H9-4 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 QVDEGVWPPPNNLLS(0.189)QS(0.811)PK 103.95 0.00023366 112620000.0 339510.0 238590.0 214960.0 213470.0 216970.0 279980.0 278420.0 237690.0 346220.0 271910.0 True False 337682.1158831073 246531.32391929923 245224.4995341856 240495.28011242786 244599.8434180555 260625.6416020281 264951.76093231345 255427.63476536397 260898.7201103143 254556.4710061373 1.326550900664261 0.9684740008567899 0.9633402700977627 0.9447619978461659 0.9608863701294722 1.0238421383353655 1.0408368716186576 1.00342228094137 1.02491490033276 1.0 17.957626214836434 4.741094620683399 24.991718999373134 0.9927670043161337 1.326551018842841 0.9157444314904416 0.030418180005059914 67.9595083698126 670214.6913132276 0.008255086152132777 0.05629855290661782 55092.771515017004 -4.741094620683399 0.33378401452670736 QVDFLNWEVTDHNLHELR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVDFLNWEVTDHNLHELR 18 0 Q9NV31 Q9NV31 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 0 124.26 1.8631e-05 118670000.0 71057.0 81695.0 85913.0 85408.0 77290.0 76887.0 80546.0 24834.0 80723.0 56066.0 False True 70674.43700717491 84414.16868932967 98008.80363081729 96220.64404292051 87132.42336627883 71571.98266252987 76649.68226439964 26687.239184496826 60829.898282782364 52487.81987948248 1.3464921417854812 1.6082620479027978 1.8672675652342914 1.8331994787334123 1.6600503424669568 1.3635922167631773 1.460332748443264 0.5084463261338252 1.158933604452503 1.0 15.67969505493433 1.9044767263272513 5.480866529125249 0.854458593817591 1.6202286877040584 0.6839020439641883 0.22020805596597443 0.12351819806932565 5.531992831995278 0.10190386958479934 0.061126405926792776 80.25585509188988 -1.9044767263272513 0.7657700938864673 QVDFWFGDANLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVDFWFGDANLHK 13 0 Q4G0J3;Q4G0J3-3;D6RFF0;D6RF22;D6RF49;D6RAF3 Q4G0J3 LARP7 La-related protein 7 0 147.56 4.2839e-05 300790000.0 251780.0 233930.0 266220.0 222620.0 234070.0 278710.0 270050.0 245390.0 321590.0 269190.0 False True 250424.44445538774 241716.21863632894 303701.4619742785 250803.6691742573 263877.42705841514 259443.43371276977 256986.64980881853 263702.24786517175 242338.4535852235 252010.06373484596 0.9937081112715938 0.959153039581198 1.2051164047711205 0.995212911172238 1.0470908310076676 1.029496321963336 1.0197475688082391 1.0463957032391682 0.9616221272821925 1.0 17.94312182169555 1.2453118259297922 24.991392414452577 0.980811057455753 1.0382202257726636 0.1137833866495811 0.06263881964406631 298.11026039155007 1103565.6879860663 0.04251951605990244 0.014759976610114847 17.591862664413057 -1.2453118259297922 0.057409168316910564 QVDGDNSHVEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 QVDGDNSHVEMK 12 0 P02786;F8WBE5 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form 0 ; 150.16 0.00036316 0.0 784790.0 830840.0 775150.0 736270.0 851280.0 1126600.0 873540.0 804220.0 1086250.0 976040.0 False True 780564.7778383662 858494.0071466134 884284.3822754181 829481.7065085365 959685.4620681299 1048720.7937311407 831283.5329531395 864234.9801464138 818558.2425042732 913748.2915701147 0.8542448560939072 0.9395300818253169 0.9677548953398665 0.9077792146491667 1.0502733312027104 1.147713000840855 0.9097511214217714 0.9458129641603805 0.8958246489279075 1.0 19.80143727810585 5.141258395353785 1.0802170564951246 0.9799935604349809 0.6768299260355161 0.2200977048562215 0.07184585033095461 6.316040928655465 3.353940993352938 0.022564584879656624 2.691658519064182 138438.98144845184 -5.141258395353785 -0.3031636343994648 QVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 QVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSK 40 1 P30049 P30049 ATP5D ATP synthase subunit delta, mitochondrial 0 ; 153.24 7.22e-14 239946000.0 94243.0 91386.0 109443.0 82356.0 102140.0 177321.0 99844.0 78839.0 130096.0 98817.0 False True 93735.60615938155 94427.7277659965 124851.62310439085 92782.26115584912 115146.92356878925 165063.2166387354 95014.16427888058 84722.36651633018 98035.58399708701 92510.41445851004 1.0132438245795665 1.020725377988079 1.3495953275659087 1.0029385523665661 1.244691467904205 1.784266318607453 1.0270645184655771 0.9158143654661419 1.059724838234888 1.0 16.497328167252917 2.0258311079322926 24.99966160133845 0.9797285864111173 1.2364859582253804 0.21925005628123584 0.21788846004993903 331.2164623688631 320553.9476087053 0.08493493435625164 0.06272683345361395 106.1282756429306 -2.0258311079322926 0.25675737181426317 QVEDLQATFSSIHSFQDLSSSILAQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 QVEDLQATFSSIHSFQDLSSSILAQSR 27 0 O60664-4;O60664;O60664-3;O60664-2;K7ERZ3 O60664-4 PLIN3 Perilipin-3 0 ; 326.87 4.073099999999997e-95 497290000.0 92649.0 126176.0 133522.0 148581.0 147283.0 140363.0 145461.0 114718.0 139656.0 141662.0 False True 92150.1880782715 130375.69188499729 152320.7370059711 167391.33936564683 166038.61703526514 130660.03618896152 138424.49571501804 123278.83968620069 105239.65009452392 132621.00987705996 0.6948385339826245 0.9830696660043224 1.148541525563505 1.262178138447438 1.2519782287073775 0.9852137026409596 1.0437599279581564 0.9295573891382709 0.7935367872110262 1.0 17.016949820357816 1.7421675705407615 2.4041345033984425 0.8871240052857374 1.0714266010438223 0.1444639086160593 0.15928765063494188 0.48967793956936007 5.843779012715444 0.10843115430411829 0.04769471774378026 55.2290496938277 -1.7421675705407615 0.18430259575808483 QVEEALHQLHAR ddPTM_BT-474_Trastuzumab_2h_R1 6 QVEEALHQLHAR 12 0 F5H169;F5H5V4;F5GX23;J3KN29;O00233-2;O00233 F5H169 PSMD9 26S proteasome non-ATPase regulatory subunit 9 0 ;;;;; 202.32 7.9848e-08 2855703000.0 1089399.0 1301297.0 1189885.0 1238313.0 1176460.0 1309691.0 1284400.0 485281.0 1293128.0 1030581.0 False True 1083533.7968276066 1344609.8839943511 1357410.4653341759 1395083.298832908 1326275.2075752656 1219155.1438509952 1222268.6651155218 521495.1324269877 974453.9314274484 964808.4382552163 1.1230558874330496 1.3936547719524275 1.4069222568046262 1.4459692136978108 1.3746513349051286 1.2636240475422726 1.266851135056305 0.5405167614102468 1.0099973142748162 1.0 19.87988299960155 1.8748979267720198 6.74405058703907 0.8138348793322853 1.3403895906015906 0.6811438033500448 0.1487275020403222 0.12123100766313696 6.098365055471092 0.06249721931211933 0.03834403723790067 74.97179806873459 -1.8748979267720198 0.5265547112693053 QVEEKPQR ddPTM_BT-474_Trastuzumab_2h_R1 2 QVEEKPQR 8 1 Q14008;Q14008-3;Q14008-2 Q14008 CKAP5 Cytoskeleton-associated protein 5 0 ; 108.98 0.0033806999999999995 344340000.0 399620.0 487370.0 467310.0 438390.0 446320.0 468930.0 518710.0 442410.0 496680.0 512180.0 False True 397468.49032195593 503591.8158286131 533103.1860686655 493890.1290508612 503156.20645410195 436513.97284248506 493618.0156353727 475424.88071246 374279.86917102133 479492.2339006403 0.8289362417584407 1.0502606303587532 1.1118077590786055 1.0300273792405248 1.0493521497959555 0.9103671383610749 1.0294598759604927 0.9915173742125236 0.7805754560950389 1.0 18.871147923249005 1.422951595731833 15.167640364617073 0.8888150338988835 1.0068673330757778 0.1921038900658234 0.08988711214102921 2.897561092365908 809.3406745488221 0.05440672661909496 0.021128676182822728 26.482049666154225 -1.422951595731833 0.1180522991768943 QVEELFER ddPTM_BT-474_Trastuzumab_2h_R1 4 QVEELFER 8 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 ;;; 172.25 0.00066227 1640180000.0 1373010.0 1689540.0 1624630.0 1721750.0 1479800.0 1638490.0 1667700.0 1445300.0 1673560.0 1616780.0 False True 1365617.866715751 1745775.3175515013 1853363.782462892 1939723.3734649958 1668243.758538224 1525225.0428905871 1587026.9797673288 1553155.625084691 1261133.562555075 1513595.7162050006 0.9022342307757908 1.153396048139353 1.2244774232777185 1.281533339912202 1.102172621577556 1.0076832449782194 1.0485144499129797 1.0261363774065626 0.8332037076036939 1.0 20.529548479988758 2.796303937246788 3.412224199008448 0.9918039060411168 1.151203883495721 0.3277681189466727 0.10706833393609809 0.3072101333058165 7.185153788622787 0.03585902470941565 0.03726893310633257 625.6103676253931 -2.796303937246788 0.1593999774546042 QVEELYHSLLELGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVEELYHSLLELGEK 15 0 A0A0D9SGF6;Q13813;Q13813-2 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 166.9 1.3413e-06 215310000.0 681130.0 515070.0 464990.0 522510.0 471240.0 650180.0 642200.0 523360.0 956280.0 611310.0 False True 677462.8717606572 532213.7935836099 530456.5502344666 588659.7124258424 531249.6207416898 605234.5869590922 611134.3325577609 562415.7807682317 720617.6074954995 572295.6724311779 1.1837637507946144 0.9299629880524946 0.926892471475498 1.0285936811738383 0.9282782420577815 1.057555763768029 1.0678646755471553 0.9827363858598209 1.2591701146965395 1.0 19.12640117203541 1.2831773605273136 24.9999650657647 1.1295873436160824 1.0082539587088806 0.19163723432939028 0.09517488691907362 163.03347719517413 91351.82898446941 0.0590618608037169 0.021567173661193855 19.194524614164653 -1.2831773605273136 -0.1213333849072018 QVEHPLLSGLLYPGLQALDEEYLK ddPTM_BT-474_Trastuzumab_2h_R1 3 QVEHPLLSGLLYPGLQALDEEYLK 24 0 P54577;A0A0C4DGZ5 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase 0 ;; 163.74 1.6387e-11 199789000.0 436960.0 379802.0 318856.0 311507.0 310899.0 336471.0 281476.0 355968.0 494670.0 360089.0 False True 434607.4559108201 392443.47997484304 363748.1532539651 350943.7542604679 350490.14480725495 313211.55173753784 267859.93053726 382532.1397288783 372765.2067384009 337107.811732297 1.289223924172808 1.1641482822904412 1.079026176773452 1.0410430789398564 1.0396974872999534 0.9291138942406485 0.7945823894166301 1.1347471829951348 1.105774454833518 1.0 18.362850533431633 4.591272449335103 1.0044900665169636 1.0002766799546035 1.3947054650172077 0.5196869998234777 0.08857251473534106 1.3323112505639307 1.281903839295462 0.030062633006903483 0.5380296197728518 39018.668876326636 -4.591272449335103 0.39442878506260426 QVELALWDTAGQEDYDR ddPTM_BT-474_Trastuzumab_2h_R1 6 QVELALWDTAGQEDYDR 17 0 Q5JR08;P08134;E9PQH6;Q5JR07;C9JNR4;C9JX21;Q5JR05;U3KQA9;U3KQV3;Q5JR06;E9PN11;P62745;P61586 Q5JR08;P61586 RHOC;RHOA;RHOB Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB;Transforming protein RhoA 0 ;;;;; 371.71 1.9122999999999993e-104 1336740000.0 1131140.0 1312020.0 1339731.0 1277132.0 1378632.0 1498410.0 1258586.0 1095453.0 1284100.0 1257140.0 False True 1125050.0679214683 1355689.7925671614 1528353.4796493934 1438816.780252706 1554192.6134079418 1394828.443577736 1197703.3869145783 1177201.2654576215 967650.7610584464 1176908.2489082958 0.9559369381301123 1.151907800650309 1.298617357017507 1.2225394643867586 1.3205724531624419 1.1851632825851834 1.0176692941234562 1.0002489714466676 0.8221972799970113 1.0 20.166570422406934 2.041643872174151 2.0526504382601964 0.9346381986729732 1.2012503635470153 0.5423772228688789 0.10428698372738535 0.2573336238488653 2.0500618502270003 0.06016619771412791 0.03271845387845643 110.06364014492961 -2.041643872174151 0.26661216487404216 QVELS(ph)TMYRHMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVELSTMYRHMEK 13 1 Q5VSF9;Q05586-2;Q05586-3;Q05586-7;Q05586-4;Q05586;Q05586-6;Q05586-5 Q5VSF9 GRIN1 Glutamate receptor ionotropic, NMDA 1 1 QVELS(0.998)T(0.001)MY(0.001)RHMEK 92.925 0.0035424 774570000.0 228290.0 1147600.0 1144000.0 1855400.0 1292200.0 451210.0 585730.0 299830.0 104430.0 441800.0 True False 227060.91200540346 1185797.1722611503 1305065.2561737443 2090293.4497615497 1456754.0105305421 420018.9147340915 557396.0021941104 322204.8371058907 78694.62579030717 413603.94575599005 0.5489814938548976 2.8669870885630373 3.155350111054504 5.053852776817415 3.522098919699304 1.0155099317690892 1.347656394271809 0.7790178029297109 0.19026565533959844 1.0 18.65789042337652 2.7289057774017973 20.75284481663617 0.887019222216713 3.1398889773466756 0.5064762405289644 1.0646806813288892 58.539952648551534 125828.72522001111 0.36160017620512963 0.3464510167534809 535.6804260637837 -2.7289057774017973 2.2528697551299626 QVEVFR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVEVFR 6 0 A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 99.384 0.090404 169260000.0 100230.0 113620.0 95166.0 112160.0 135430.0 140520.0 114140.0 95936.0 129150.0 106440.0 False True 99690.3728165999 117401.77301525965 108564.54560229935 126359.44449997623 152676.20774350024 130806.18314849993 108618.61214285725 103095.23147313723 97322.71302133639 99646.90807213135 1.0004361875878487 1.178177780792517 1.0894923656207456 1.268071904534243 1.53217205327618 1.3126968581284362 1.0900349468368005 1.0346054229651536 0.9766756932476766 1.0 16.604537420156106 2.049792828386856 4.3134184411184995 1.0177973196140464 1.2363885168489632 0.3710050740679408 0.13335108976271523 0.25545973026054025 10.12372569689914 0.060529990748174854 0.04169656660117865 112.14833451796473 -2.049792828386856 0.21859119723491682 QVEYLDLDLDSGKS(ph)TPPRK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVEYLDLDLDSGKSTPPRK 19 2 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 QVEYLDLDLDS(0.098)GKS(0.531)T(0.37)PPRK 143.98 7.2976e-08 119990000.0 226610.0 194470.0 191200.0 203530.0 197440.0 267860.0 264220.0 243080.0 395030.0 280200.0 True False 225389.95693873768 200942.81639040253 218119.29805980792 229296.8771315992 222582.81368143484 249343.4686746167 251438.66918158167 261219.86393522922 297680.14963080565 262317.39610871085 0.8592261141740309 0.7660293193331594 0.8315090851596204 0.874119980348436 0.8485247908956484 0.9505411092571329 0.958528381691389 0.9958160145313932 1.1348090292396757 1.0 18.000953960452065 2.3834374368005653 0.8253674516803345 1.056496759371051 0.8161061355893753 0.8060628212348458 0.04471924935950094 0.25261501164666045 0.3389430008289808 0.032621369194787884 0.0218121959124506 241.78949979223225 -2.3834374368005653 -0.24039062378167575 QVEYLDLDLDSGKST(ph)PPRK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVEYLDLDLDSGKSTPPRK 19 2 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 QVEYLDLDLDS(0.02)GKS(0.152)T(0.828)PPRK 124.81 0.0013612 94224000.0 108920.0 95862.0 97723.0 105410.0 100260.0 122130.0 136240.0 131610.0 188230.0 134880.0 True False 108333.58682214975 99052.70872019732 111481.54897645718 118754.89519206918 113027.51671242228 113687.44056309617 129649.55071265876 141431.4065020385 141843.23865277722 126271.84292342227 0.8579393815282225 0.7844401921041729 0.8828694219982622 0.9404701194080793 0.8951125927651817 0.9003388081699423 1.0267494930859995 1.1200549800149013 1.1233164525744528 1.0 16.946173446075967 2.1738089551189197 2.482971653984298 1.0933766694512335 0.8725825801002921 0.7901523586619965 0.048741271894071576 0.12479909894667558 1.551007545487977 0.023387385735461938 0.015428396035684704 149.2137878068129 -2.1738089551189197 -0.22079408935094136 QVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHR ddPTM_BT-474_Trastuzumab_2h_R1 5 QVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHR 37 1 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ;;;; 304.95 5.191299999999997e-93 1631706000.0 2205714.0 2002695.0 1816744.0 1729769.0 1763208.0 2190823.0 1951451.0 1950065.0 2642393.0 2229609.0 False True 2193838.680901864 2069353.492420308 2072525.7637780695 1948757.5780427868 1987742.0874474042 2039376.5626526144 1857051.859863246 2095588.7525294295 1991210.6514021545 2087313.4447556988 1.0510346140939235 0.9913956610682911 0.9929154478380893 0.933619999880215 0.9522968830778797 0.9770341717371083 0.8896851905635079 1.003964573597953 0.9539586191067762 1.0 20.99321583069393 4.759270720349268 1.2447406579011375 0.9587150976743304 1.093705707702548 0.4243432714929616 0.03199834899164039 1.3949188639930408 1.791056116862913 0.008657900718581307 0.24516984630471975 57447.4453082922 -4.759270720349268 0.13499061002821766 QVGETSAPGDTLDGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVGETSAPGDTLDGTPR 17 0 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 QVGETSAPGDT(0.002)LDGT(0.998)PR 227.06 3.1506e-18 0.0 112370.0 143200.0 130590.0 120740.0 142650.0 175030.0 129910.0 97929.0 129550.0 130750.0 True False 111765.01240548067 147966.32543377206 148975.9368913717 136025.6716202488 160815.63194720744 162930.58807630176 123625.75699560675 105236.95925338616 97624.1383810619 122405.42305929323 0.9130723918281108 1.2088216496919186 1.2170697438724403 1.1112716105262583 1.3137949931295796 1.331073280939343 1.0099696067854966 0.8597409871489872 0.797547493739495 1.0 16.90130795115555 2.0180510307392483 5.1200475727573975 0.8830669323534879 1.188128599847506 0.5609893967874469 0.11878095078813018 0.1265917956658274 9.434120050334473 0.0485939997312839 0.0333461589076372 104.24399116174351 -2.0180510307392483 0.3050616674940181 QVHPDTGIS(ph)SK ddPTM_BT-474_Trastuzumab_2h_R1 2 QVHPDTGISSK 11 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880;Q96A08 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL;HIST1H2BA Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A 1 QVHPDTGIS(0.96)S(0.04)K;QVHPDTGIS(0.971)S(0.029)K 157.68 1.963e-05 730760000.0 1109630.0 1043720.0 994310.0 995080.0 842220.0 1213760.0 1239570.0 1238840.0 1770330.0 1215950.0 True False 1103655.875371482 1078459.5892579376 1134300.2053025481 1121057.0259721484 949471.7247709571 1129855.6280837113 1179607.2634827541 1331288.5315020552 1334055.8927066422 1138347.0299728317 0.9695249746448781 0.947390875420193 0.9964449991402181 0.9848113066178984 0.8340793271043344 0.9925405858973224 1.0362457426632958 1.169492691111803 1.1719237258768807 1.0 20.118509005790422 2.0745932437814787 2.7152250106391747 1.1290926305409987 0.9504629921377319 0.5643323521985293 0.06264394068461222 0.17669053744952976 2.5570819790628563 0.02907740034781087 0.017918670922375465 118.7389608294544 -2.0745932437814787 -0.17862963840326684 QVHPDTGISS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 4 QVHPDTGISSK 11 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880;Q96A08 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL;HIST1H2BA Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A 1 QVHPDTGIS(0.059)S(0.941)K;QVHPDTGIS(0.025)S(0.975)K;QVHPDTGIS(0.029)S(0.971)K;QVHPDTGIS(0.013)S(0.987)K 184.0 3.2857e-06 1988190000.0 2355720.0 2399720.0 2270720.0 2158940.0 2007680.0 3057050.0 2922530.0 2844540.0 4425720.0 2686280.0 True False 2343037.065265096 2479593.229538627 2590417.6385479406 2432261.5826388947 2263346.1475483333 2845723.329021643 2781156.0587512236 3056814.0190814463 3335060.607609674 2514839.310559985 0.9316846032374793 0.985984758201704 1.030052945200354 0.9671638153681068 0.8999963290077363 1.131572628546187 1.1058981172566198 1.2155106714952608 1.3261525671264651 1.0 21.26203478913052 QVHPDTGISSK ddPTM_BT-474_Trastuzumab_2h_R1 36 QVHPDTGISSK 11 0 Q16778;P33778;P23527;P06899;P58876;U3KQK0;Q99879;Q99877;Q93079;Q5QNW6;P62807;O60814;Q5QNW6-2;P57053;Q99880;Q96A08 Q16778;P58876;Q99880 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BD;HIST1H2BN;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BL;HIST1H2BA Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-D;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 174.89 1.0469e-05 214621352100.0 126868849.39999999 154628290.0 140190980.0 137522703.4 147149190.4 160762935.0 155346437.1 158483168.4 180426077.7 150991120.8 False True 126185801.61128473 159774999.15787482 159928651.4221577 154933063.5499196 165887767.57585675 149649771.6986932 147831736.45645386 170309987.18723094 135962488.43641096 141354738.20054182 0.8926888706925641 1.130312299338703 1.1313992969607063 1.0960585087010952 1.173556469967845 1.058682387330965 1.045820878297854 1.2048410216402503 0.9618530667399291 1.0 27.074745002111325 4.743482977693501 24.585613458172016 1.101414775731691 0.8926887617652098 0.3894955011457074 0.07234874538272722 371.89537947323566 1857419.25296121 0.016080861429223475 0.13203638988255184 55396.58306510522 -4.743482977693501 -0.20872601396648116 QVHQCIER ddPTM_BT-474_Trastuzumab_2h_R1 2 QVHQCIER 8 0 E7EQY1;Q96C01;C9JF51 E7EQY1 FAM136A Protein FAM136A 0 ; 133.57 0.0009136 576280000.0 189446.0 265870.0 269790.0 259320.0 240750.0 282920.0 249040.0 211521.0 290460.0 207162.0 False True 188426.04378542936 274719.32222819136 307774.0869432819 292149.8854113214 271408.085462953 263362.40632204356 236992.98377481292 227305.77110187474 218880.0249645949 193940.74379968882 0.9715650259650684 1.4165116460104663 1.58694909029103 1.5063873618689823 1.399438200274596 1.3579529559505903 1.2219865672970218 1.1720372246104558 1.1285922734764002 1.0 17.565256396514172 1.760280315597969 1.0701211174679586 1.041642554758236 1.3980034853535914 0.3998751811346898 0.15411515272966578 0.49541558078218273 1.0554977040658822 0.13499232407419534 0.05446817337719105 57.581147523410365 -1.760280315597969 0.35636093059535545 QVINNACATQAIVSVLLNCTHQDVHLGETLSEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 QVINNACATQAIVSVLLNCTHQDVHLGETLSEFK 34 0 Q5LJB0;Q5LJA5;Q5LJA9;Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5 Q5LJB0 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 0 313.58 1.1618999999999991e-104 72597000.0 51012.0 32016.0 26900.0 27794.0 39135.0 31354.0 36097.0 28642.0 52868.0 31912.0 False True 50737.35705996603 33081.6332059193 30687.2861810085 31312.717550216967 44118.61027868188 29186.57177937703 34350.850206068986 30779.41148112902 39839.389794905284 29875.348838762246 1.6983017448196636 1.1073220729391788 1.0271775016462 1.0481121984286184 1.476756322304076 0.9769449701457026 1.1498058279239214 1.0302611576937901 1.3335204890801153 1.0 14.866667938333686 4.739695097906367 24.794462978412287 1.1258545275552032 1.6983019505064771 0.5600529723209792 0.15169274217460013 60.80933478346369 1328823.6993894083 0.03432812707205459 0.21176903003940836 54915.519693510934 -4.739695097906367 0.5724474229512739 QVKPYVEEGLHPQIIIR ddPTM_BT-474_Trastuzumab_2h_R1 3 QVKPYVEEGLHPQIIIR 17 1 Q99832-3;Q99832;Q99832-4;F8WAM2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;; 191.21 1.5337e-10 2556447000.0 4436429.0 4329824.0 3918189.0 3962760.0 3849134.0 4570876.0 4456875.0 4048830.0 5355683.0 4580611.0 False True 4412543.759197603 4473939.574406116 4469835.953690694 4464445.009689063 4339298.399295363 4254902.100804742 4241278.929334118 4350974.254142152 4035846.6871254398 4288272.484321623 1.0289793326637542 1.0432964767895025 1.0423395364993446 1.0410823999667804 1.0118989441926314 0.9922182222237774 0.9890413785133014 1.0146216850840923 0.9411357841370671 1.0 22.031965149394523 3.020378128780296 2.4251558142122427 0.9904497241983428 1.0398213403129546 0.6403206290202975 0.018093057822617397 0.1928147733361741 2.2900973465210996 0.005731541832170376 0.006764876139133085 1048.0406523455938 -3.020378128780296 0.04937161611461183 QVLDLEDLVFTQGSHFMANK ddPTM_BT-474_Trastuzumab_2h_R1 2 QVLDLEDLVFTQGSHFMANK 20 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 286.6 2.9235e-45 512360000.0 589690.0 552020.0 496230.0 469310.0 448750.0 521010.0 509800.0 533440.0 606160.0 574070.0 False True 586515.1745607184 570393.6519968634 566094.8706915185 528724.5978805614 505895.65255036415 484993.80502561864 485139.0263748779 573248.0015534342 456779.99012786173 537432.3611139458 1.0913283549673818 1.0613310497614958 1.053332310540741 0.9837974713406991 0.9413196695148484 0.902427617161652 0.902697830419667 1.0666421358871145 0.849930192482428 1.0 19.035723669276837 3.7121634664805416 2.1979124982997535 0.9506243982519236 1.0752933982685917 0.49942835098266947 0.055905099233841606 0.286090227041996 2.6946789290332345 0.016307709834052116 0.031986318479690655 5154.226108171303 -3.7121634664805416 0.12466900001666814 QVLGQMVIDEELLGDGHSYSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 QVLGQMVIDEELLGDGHSYSPR 22 0 P28070 P28070 PSMB4 Proteasome subunit beta type-4 0 ;;; 235.99 1.7628e-30 731351000.0 551081.0 616193.0 570062.0 636161.0 583257.0 592194.0 505882.0 521484.0 662137.0 600237.0 False True 548114.0411268545 636702.6115084649 650321.7745322699 716698.9173729426 657531.3217149144 551257.0226547302 481410.55500309094 560399.7841220967 498962.2085312329 561929.3607712506 0.9754144904878533 1.1330652141660433 1.1573016466690766 1.2754252890243536 1.170131635073223 0.9810076873330262 0.8567100931376015 0.9972779912281955 0.8879447193262958 1.0 19.100029257427025 2.657318369227329 4.5612445935659665 0.9376496773727273 1.1499138295762026 0.6062793540471083 0.07997621687357216 0.1533073088041899 5.800112273847265 0.02711935177812546 0.025633622441949187 454.2745106493162 -2.657318369227329 0.21226415220347528 QVNTISEAIVAEEDEEGRLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVNTISEAIVAEEDEEGRLDR 21 1 Q96NB3;J3QQQ3 Q96NB3 ZNF830 Zinc finger protein 830 0 233.59 8.5445e-30 50703000.0 24531.0 31410.0 23380.0 25571.0 29476.0 27418.0 27121.0 26738.0 28897.0 27914.0 False True 24398.92782165031 32455.462862254037 26671.700777396996 28808.285978146312 33229.5938820602 25522.658195029653 25809.053617718844 28733.325332812907 21775.721549961752 26132.504621622258 0.9336620494256961 1.2419576053724337 1.0206331602570005 1.1023928396939837 1.2715809052059155 0.9766632997708145 0.9876226558232085 1.0995243566909658 0.8332810752454372 1.0 14.673557783274667 1.253343229220841 24.93670271736142 0.9166405337713072 1.0826893635656711 0.25714170417168913 0.11043322739422902 252.6152600454367 426139.3627417097 0.07112770633270969 0.02573257046756432 17.920215551337982 -1.253343229220841 0.16604882979436397 QVQDESQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVQDESQR 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 88.294 0.035851999999999995 0.0 59683.0 61721.0 68120.0 65654.0 67440.0 50625.0 66989.0 63017.0 78373.0 77086.0 False True 59361.67335940464 63775.346173867576 77710.70389034579 73965.78966834373 76028.08425180285 47125.41290843157 63748.48614716886 67719.64853384218 59059.024294395706 72166.30548335501 0.822567719960339 0.8837274645932541 1.0768280760647997 1.0249352405244545 1.0535122138036919 0.6530112992870466 0.8833552683651278 0.9383831980904378 0.8183739474929548 1.0 16.13903777817791 QVQEFLKDGDDVIIIGVFK ddPTM_BT-474_Trastuzumab_2h_R1 3 QVQEFLKDGDDVIIIGVFK 19 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ;; 247.25 9.004499999999999e-25 403726000.0 1260597.0 1147457.0 1114422.0 991796.0 992929.0 1394432.0 1318825.0 1235104.0 2078070.0 1256118.0 False True 1253810.0858174923 1185649.412592595 1271322.930870331 1117357.2719088655 1119372.622598731 1298038.1979798528 1255028.396349252 1327273.732211031 1565957.4932113718 1175951.4738232754 1.0662090347496072 1.0082468868700758 1.0811015243145894 0.9501729423205643 0.9518867466183837 1.1038195256132863 1.0672450558430615 1.1286806996344618 1.3316514567732132 1.0 20.165397097254438 1.9850441316953003 1.6259982498339407 1.169472260223008 1.017662854596198 0.29757573874034826 0.08798313818722164 0.42626766592692783 2.100584936079751 0.05508409751212524 0.026577417643088644 96.61490511541582 -1.9850441316953003 -0.15180940562681 QVQHEESTEGEADHSGYAGELGFR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVQHEESTEGEADHSGYAGELGFR 24 0 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 0 193.77 2.3053999999999997e-18 371010000.0 114580.0 115370.0 98365.0 109770.0 97487.0 120140.0 107010.0 84528.0 84841.0 120130.0 False True 113963.11401103485 119210.02070736222 112213.9369960929 123666.87074502846 109901.39159928082 111835.00457913995 101833.51748210228 90835.90858448697 63933.07236115529 112463.20055153249 1.0133369266759849 1.059991358264237 0.997783598953105 1.0996207660688286 0.9772209136883153 0.9944142086539259 0.9054830111778696 0.8076945004145109 0.5684799298581237 1.0 16.779093484174215 1.9940461747333258 1.8515808679310168 0.7660210581439647 1.029927051149126 0.5069651817275413 0.10252703067584164 0.2501332642068033 1.5982904900940575 0.05811301052704752 0.029311314547319715 98.63843536763171 -1.9940461747333258 0.2639059930051614 QVQPEGPYR ddPTM_BT-474_Trastuzumab_2h_R1 3 QVQPEGPYR 9 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 154.49 0.00017583 939330000.0 881330.0 962330.0 1029910.0 904890.0 648070.0 834700.0 909990.0 734580.0 1139430.0 876320.0 False True 876585.0172049686 994360.5723092295 1174912.3758618021 1019448.9812195391 730597.873088165 776999.1536724503 865970.3072006186 789398.0897216594 858632.7440797628 820392.5073447031 1.0684946648795455 1.2120546731071382 1.4321344543534953 1.2426356556072236 0.8905467401851718 0.9471065943633488 1.0555560898568337 0.9622200137793058 1.0466121233345107 1.0 19.645954790162424 3.252589543669931 24.720185782732823 0.9837325321462798 1.250724938367344 0.6400787545261322 0.09356445036037934 128.80376980921662 226961.86782830866 0.026790370225043113 0.0360908492964154 1788.9143328772018 -3.252589543669931 0.26699240622106424 QVQPQVQPQAHSQGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVQPQVQPQAHSQGPR 16 0 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 0 80.387 0.015708 86264000.0 53427.0 41719.0 41811.0 39611.0 40563.0 45498.0 46065.0 42145.0 58580.0 42387.0 False True 53139.354968297725 43107.59169533193 47697.62537227314 44625.74853859268 45728.45761426276 42352.830350771714 43836.659964611106 45290.07390797367 44143.74393178394 39681.82537066356 1.3391358505292754 1.0863308653941361 1.2020017962060685 1.12458910651787 1.1523778754409173 1.0673105371327702 1.1047037165034042 1.14133040718072 1.1124423717770564 1.0 15.27619077101601 QVS(ph)ASELHTSGILGPETLR ddPTM_BT-474_Trastuzumab_2h_R1 9 QVSASELHTSGILGPETLR 19 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 QVS(1)ASELHTSGILGPETLR;QVS(0.998)AS(0.002)ELHTSGILGPETLR;QVS(0.997)AS(0.003)ELHTSGILGPETLR;QVS(1)ASELHTSGILGPETLR;QVS(0.97)AS(0.03)ELHTSGILGPETLR;QVS(0.984)AS(0.016)ELHTSGILGPETLR;QVS(0.996)AS(0.004)ELHTSGILGPETLR;QVS(0.945)AS(0.055)ELHTSGILGPETLR;QVS(0.989)AS(0.011)ELHTSGILGPETLR 262.55 2.0997e-31 42236780000.0 2502845.0 4806310.0 5577228.0 7007690.0 6213930.0 5711880.0 6552920.0 5409310.0 3582860.0 6750630.0 True False 2489369.9606122198 4966285.122874251 6362453.224265188 7894862.835485351 7005237.1526513295 5317031.179919243 6235930.225014637 5812980.180119613 2699912.1608643113 6319799.0138948895 0.3939001786510964 0.7858295986874322 1.0067492985578368 1.2492268849258468 1.1084588508668418 0.8413291574983741 0.9867291999799589 0.9198045962124792 0.4272148773921778 1.0 22.59144724698797 4.6648105071787285 2.761708292832059 0.952024220709201 0.3350736082816558 0.3999499138870427 0.20244089387929368 0.36515416477700613 4.157430354585826 0.05126788516438527 0.46875765809349335 46217.93177723133 -4.6648105071787285 -0.6169506124275452 QVS(ph)TENDSTLVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVSTENDSTLVHR 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 QVS(0.954)T(0.046)ENDSTLVHR 124.78 0.00012182 0.0 68355.0 68665.0 56824.0 71993.0 55597.0 69324.0 67591.0 66760.0 76851.0 77503.0 True False 67986.98427495445 70950.47301613099 64824.32527693783 81107.30641839147 62676.948400763395 64531.795051142966 64321.36510730558 71741.97020041109 57912.100800640634 72556.69218634345 0.9370187949079477 0.9778625634409118 0.8934299969250665 1.1178473545911924 0.8638341483345678 0.8893982499286134 0.8864980357995438 0.9887712358242579 0.7981634643970276 1.0 16.146821065361628 QVSDLISVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 QVSDLISVLR 10 0 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 96.113 0.016196000000000002 178242000.0 263820.0 273570.0 264790.0 207037.0 255150.0 255520.0 220550.0 203395.0 255710.0 245370.0 False True 262399.6224331577 282675.6120734425 302070.1304040612 233247.86297201837 287641.8401074658 237856.50382938152 209881.15391718174 218573.36771888277 192693.69683845132 229710.2765281739 1.1423068501725235 1.2305745147573857 1.315004861643673 1.0154002097655852 1.2521940439708041 1.035463051215336 0.9136776860370017 0.9515175856404265 0.8388553605472565 1.0 17.80945587431589 2.5070102584665728 3.2756104063863 0.9256138145372346 1.1902548594181448 0.6947396800177165 0.08291394845621461 0.13582787305683133 2.991416212248053 0.028680571304789737 0.025262266808831684 321.3736449387398 -2.5070102584665728 0.2646410448809102 QVSIEEGER ddPTM_BT-474_Trastuzumab_2h_R1 2 QVSIEEGER 9 0 P20340-2;P20340;P20340-4;Q53S08 P20340-2 RAB6A;RAB6C Ras-related protein Rab-6A 0 ; 130.41 0.00084197 700010000.0 393100.0 474810.0 468000.0 410370.0 492800.0 505550.0 416250.0 411410.0 506510.0 437720.0 False True 390983.59327751584 490613.7638212938 533890.3320710774 462322.7999238155 555555.158945558 470602.51843669283 396114.39727058256 442111.50329764985 381687.3973862729 409784.3348490544 0.9541203995060868 1.1972487040091788 1.3028568607136677 1.1282100378339592 1.355725711550684 1.1484151013484716 0.966641141654409 1.078888248523466 0.9314348180900299 1.0 18.644505308791942 2.356216636814011 5.234597386568387 1.0088020703110956 1.19662222559363 0.42416427100191756 0.10641753178445426 0.20641199926234421 8.64367491092616 0.03712976797519023 0.03074686654835969 227.09973989820284 -2.356216636814011 0.18782015528253448 QVSSTKPVPLNCPS(ph)PVPPLYLDDDGLPFPTDVIQHR ddPTM_BT-474_Trastuzumab_2h_R1 3 QVSSTKPVPLNCPSPVPPLYLDDDGLPFPTDVIQHR 36 1 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 QVS(0.003)S(0.003)T(0.003)KPVPLNCPS(0.957)PVPPLY(0.036)LDDDGLPFPTDVIQHR;QVS(0.001)S(0.001)T(0.001)KPVPLNCPS(0.979)PVPPLY(0.019)LDDDGLPFPTDVIQHR;QVS(0.138)S(0.138)T(0.138)KPVPLNCPS(0.57)PVPPLY(0.017)LDDDGLPFPTDVIQHR 70.378 0.0029412 368925000.0 146472.0 147505.0 129258.0 145035.0 140894.0 164170.0 138579.0 151253.0 225637.0 165269.0 True False 145683.4110265692 152414.61475634444 147456.40286932327 163396.4161292263 158836.0157558349 152821.31431461143 131875.40434681083 162540.26690717146 170031.7847308968 154721.39092609036 0.9415854534048329 0.9850907740943988 0.9530447082120821 1.0560686867614832 1.0265937683543065 0.9877193670499861 0.8523411246335489 1.0505351970679746 1.0989546029360615 1.0 17.239313144071758 3.8102852267293446 24.998708202802256 1.005223945786624 0.9624252734677646 0.11736366385503039 0.06214764037455322 416.643502813561 145213.4526386636 0.01679097975230181 0.030270368696839862 6460.784074172877 -3.8102852267293446 -0.042798672318859476 QVTDAETKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 QVTDAETKPK 10 1 O43684;O43684-2 O43684 BUB3 Mitotic checkpoint protein BUB3 0 ; 121.68 0.00046387 612430000.0 1042360.0 920400.0 832940.0 792310.0 861580.0 1269100.0 1192010.0 1197820.0 1727260.0 1335530.0 False True 1036748.049577083 951034.957606451 950210.7119557341 892616.3647626254 971297.1060152487 1181370.104140058 1134347.9223795966 1287207.4108067148 1301599.9170982088 1250295.3319952423 0.82920252763211 0.7606482510726273 0.7599890103079661 0.7139244160323092 0.7768541409054422 0.9448728423666173 0.9072639826379142 1.029522687853731 1.0410339731662388 1.0 20.253837483155188 2.468962183279252 1.3900827781896754 1.0166784441951606 0.7601977521518507 0.8740161017309772 0.04153796501493151 0.13668116677970144 0.5341705841807228 0.021659791534504785 0.01596740110435281 294.4165255862655 -2.468962183279252 -0.2564806920433099 QVTDAETKPKS(ph)PCT ddPTM_BT-474_Trastuzumab_2h_R1 2 QVTDAETKPKSPCT 14 2 O43684 O43684 BUB3 Mitotic checkpoint protein BUB3 1 QVTDAETKPKS(0.811)PCT(0.189);QVTDAET(0.009)KPKS(0.91)PCT(0.082) 118.05 0.00021118 335590000.0 335940.0 267020.0 223884.0 261290.0 253010.0 380900.0 355370.0 335340.0 679420.0 392430.0 True False 334131.33636644285 275907.5992830017 255404.9211653869 294369.2872093329 285229.3237922398 354569.279542155 338179.39545476704 360364.7736220171 511986.0447615677 367384.781423774 0.9094860572926843 0.7510044325019155 0.6951973355444474 0.8012560729067909 0.7763776242631868 0.9651169495046761 0.9205046386085358 0.9808919471989249 1.393596225672173 1.0 18.486932339810426 1.9139309653153915 1.1098577352819783 1.1642521972781683 0.7861611180040448 0.5925923598396292 0.11947467596552595 0.3322030438060288 0.7529908580626599 0.09318847725529876 0.040922289490111896 82.02211530593527 -1.9139309653153915 -0.37809107927412355 QVVPPFKPNISGEFGLDNFDSQFTNEPVQLT(ph)PDDDDIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 QVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDDIVR 39 1 P41743 P41743 PRKCI Protein kinase C iota type 1 QVVPPFKPNISGEFGLDNFDSQFTNEPVQLT(1)PDDDDIVR;QVVPPFKPNISGEFGLDNFDSQFTNEPVQLT(1)PDDDDIVR 191.02 8.65e-24 315520000.0 100470.0 94732.0 94171.0 98486.0 104446.0 109015.0 102266.0 97023.0 121535.0 107941.0 True False 99929.08068326626 97885.09735329663 107429.45825099459 110954.31750200302 117746.57900005642 101479.04964370698 97319.00288594197 104263.34893281129 91584.32773556432 101052.11296706062 0.9888866026565875 0.9686595804800606 1.0631094699228383 1.0979910686100167 1.165206501307277 1.004224915878657 0.9630575752301636 1.0317780189989438 0.9063078944763634 1.0 16.624739962757424 2.4935396049182037 24.65046320339508 0.9832304114834831 1.0575375608978075 0.29732533972973774 0.059020749652655115 897.4345615481108 1347407.056145049 0.02089694844542936 0.01922021595946258 311.5585004725475 -2.4935396049182037 0.07430714941432437 QVVQGLLSETYLEAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVVQGLLSETYLEAHR 16 0 P33993;P33993-3;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 248.2 2.2193e-20 538720000.0 414500.0 475280.0 388740.0 474540.0 375760.0 425830.0 427730.0 399050.0 544570.0 484830.0 False True 412268.3780552793 491099.4074871724 443471.2130113479 534616.7153443181 423610.80869598774 396393.37439599773 407039.0658127237 428829.1373348415 410368.02036414377 453887.73431615427 0.9083047345979058 1.0819843110038714 0.9770504454796508 1.1778611205473384 0.9332942414366342 0.8733291173713256 0.8967835767273714 0.944791200363528 0.9041178893772508 1.0 18.791975976415294 3.034019938054436 24.999992650793985 0.9185420071722933 1.0378620753959216 0.3612295002359409 0.0721663202750323 178.38639136681434 131088.43597907602 0.01957076037195963 0.023391437670314177 1081.4836000612418 -3.034019938054436 0.11932006822362828 QVVSVVQDEEVGLPFEASPES(ph)PPPASPDGVTEIR ddPTM_BT-474_Trastuzumab_2h_R1 5 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 1 QVVSVVQDEEVGLPFEAS(0.002)PES(0.671)PPPAS(0.327)PDGVTEIR;QVVSVVQDEEVGLPFEAS(0.033)PES(0.938)PPPAS(0.03)PDGVTEIR;QVVSVVQDEEVGLPFEAS(0.009)PES(0.989)PPPAS(0.002)PDGVTEIR;QVVSVVQDEEVGLPFEAS(0.013)PES(0.978)PPPAS(0.009)PDGVTEIR;QVVSVVQDEEVGLPFEAS(0.002)PES(0.994)PPPAS(0.004)PDGVTEIR 252.79 1.3484e-59 2794930000.0 722768.0 879579.0 758506.0 840286.0 713553.0 823732.0 807828.0 683225.0 763549.0 808541.0 True False 718876.6973950738 908855.2552982662 865297.0517476589 946666.1214435357 804419.7449900165 766789.3456965558 768750.2734373568 734210.718846253 575382.5799824118 756939.2211532239 0.9497152179534832 1.200697796995633 1.143152617233056 1.2506501116447053 1.0627269964482144 1.0130130983678252 1.0156036996816447 0.9699731475502839 0.7601436996563554 1.0 19.529817937314778 2.2374456952282817 1.1084971005825082 0.9016039413310201 1.1361691646223873 0.47021188209085474 0.096434493194508 0.42621707383794005 1.0043139533525305 0.06497018050619022 0.0366478016284838 172.76099443081662 -2.2374456952282817 0.2345652232913672 QVVSVVQDEEVGLPFEASPESPPPAS(ph)PDGVTEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 1 QVVSVVQDEEVGLPFEAS(0.003)PES(0.046)PPPAS(0.946)PDGVT(0.005)EIR 113.41 4.9907e-06 861820000.0 44094.0 54024.0 50788.0 57256.0 39762.0 49968.0 46232.0 43218.0 44905.0 45464.0 True False 43856.60280330394 55822.15618180237 57938.50894279032 64504.60372941009 44825.455012161714 46513.82977201988 43995.5815366092 46443.146616557286 33838.76444617201 42562.448596311304 1.0304060092798513 1.3115353562304266 1.3612588291692314 1.5155284965207667 1.053169084262848 1.0928372616243471 1.0336712991747872 1.0911765687414494 0.7950380103156157 1.0 15.377293530297852 3.1097329105435434 8.603016844623514 1.0231714570211528 1.308740821759612 0.5275853577206859 0.13610640296240126 0.2132550937164854 15.484321720419386 0.03977809728421495 0.04761183855559681 1287.4575266841384 -3.1097329105435434 0.2855693647384592 QWADDWLVHLISPNVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 QWADDWLVHLISPNVYR 17 0 Q9H7Z7;A6NHH0;X6RJ95 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 ; 147.56 3.9492e-07 154455000.0 196865.0 252910.0 256130.0 234974.0 227631.0 252990.0 193301.0 173599.0 279850.0 213558.0 False True 195805.10071375765 261327.95646267652 292190.8776781307 264721.684307573 256618.45857535815 235501.3967744017 183950.29214847053 186553.83889786038 210884.7172978784 199928.5456037976 0.9793754069605876 1.3071067749402598 1.4614765330068034 1.3240814787507997 1.2835508696387163 1.1779278244793494 0.9200801796108121 0.9331025658915053 1.0548004371311381 1.0 17.609124947824466 2.4020771024938545 3.552067291132697 0.9658114946908355 1.283925833926755 0.5771566155786731 0.11828042031132233 0.16243681915184818 4.114846720615419 0.0447595309841696 0.03702950033750722 252.39288185439804 -2.4020771024938545 0.3181143392359195 QWDSVVLER ddPTM_BT-474_Trastuzumab_2h_R1 1 QWDSVVLER 9 0 Q9BRX2 Q9BRX2 PELO Protein pelota homolog 0 76.465 0.035355000000000004 378700000.0 93313.0 102860.0 100750.0 107090.0 84580.0 98442.0 86115.0 89748.0 136220.0 103540.0 False True 92810.61317604884 106283.63291981696 114934.72426530125 120647.58301981498 95350.76165506362 91636.93624754217 81949.28845875362 96445.4514911098 102650.40625448282 96931.98855494612 0.9574817824297387 1.096476349080261 1.1857254346964134 1.2446622092295736 0.9836872540896426 0.9453735305925098 0.8454307982374722 0.9949806346584902 1.0589941234548716 1.0 16.56468522799481 3.0900273041263038 8.854223661910924 0.9609612835291012 1.1236829162452888 0.42417085934467624 0.08529077922117419 0.26534273213654247 23.48417127116428 0.025995187980651153 0.031104746878463155 1230.3461203327533 -3.0900273041263038 0.16272163271618767 QWDYYAR ddPTM_BT-474_Trastuzumab_2h_R1 2 QWDYYAR 7 0 Q6UN15;Q6UN15-5;Q6UN15-3;H0Y8P7 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 0 ; 107.66 0.017277 614890000.0 919490.0 1052110.0 1098820.0 1000020.0 749140.0 928720.0 944750.0 811380.0 1211440.0 956830.0 False True 914539.5680049421 1087128.8453360747 1253524.304885345 1126622.4294656385 844538.5384993424 864519.7723717242 899048.8332045238 871929.2957041567 912896.8444643283 895764.2902166238 1.020960065045435 1.213632712544472 1.39939079797678 1.2577219719187354 0.9428133580711356 0.9651197104124974 1.0036667491925868 0.9733914437393982 1.019126185800018 1.0 19.77275962851358 3.2408910717865536 24.999881274459288 0.9825659309863937 1.2348671914940716 0.6366336873567204 0.08823389695097256 38.74340967020836 415613.6790509486 0.02590355374786427 0.03346675287029748 1741.3700543049426 -3.2408910717865536 0.252301260507678 QWGWTQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 QWGWTQGR 8 0 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 ; 153.71 0.0010159 4001200000.0 1599290.0 1583050.0 1672690.0 1544300.0 1194970.0 1470340.0 1588270.0 1171890.0 1944370.0 1572410.0 False True 1590679.6003378225 1635740.862276066 1908190.2127178858 1739808.221659354 1347142.3463578997 1368698.8566080625 1511439.312319396 1259342.3825368446 1465206.066723159 1472057.4475920699 1.0805825567064586 1.111193632389648 1.296274283207645 1.181888807739983 0.9151425092556673 0.9297863061301874 1.0267529401055273 0.8554981224386482 0.9953457109434704 1.0 20.4894025435309 3.241613346777707 24.999396936113662 0.9443744325982067 1.1726633088264187 0.6895783185477187 0.07004783881159503 43.08235437418217 352806.291856944 0.020103189718388342 0.02609413413382601 1744.2685357575338 -3.241613346777707 0.22828887622821192 QWIQISDAVYHMVYEQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 QWIQISDAVYHMVYEQAK 18 0 Q96TA1;Q96TA1-2 Q96TA1 FAM129B Niban-like protein 1 0 178.06 9.0664e-14 105960000.0 230820.0 171590.0 146720.0 140670.0 132660.0 158180.0 159410.0 123430.0 260350.0 176850.0 False True 229577.29076651277 177301.2694216548 167376.90068689853 158478.80757677997 149553.4646625766 147245.38891566815 151698.72929466315 132640.9733648401 196190.23101126545 165563.28159109753 1.386643756757098 1.0708972890471413 1.010954235011361 0.9572098719822759 0.9033009205020384 0.889360173950464 0.9162582901039823 0.8011496999221855 1.1849863636782054 1.0 17.337023223722166 5.424640843846359 0.9833076518130621 0.9265948610744124 2.5936118798521615 0.6427556759415642 0.09588899364468863 3.65109600359891 1.0724826406819972 0.02811985119352976 8.903075596160532 265852.5582748381 -5.424640843846359 1.667017018777749 QWLQEIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 QWLQEIDR 8 0 Q9H0U4;E9PLD0;Q92928;P62820;E7END7;P62820-2 Q9H0U4;P62820 RAB1B;RAB1C;RAB1A Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A 0 ; 121.67 0.0033110999999999995 437760000.0 413450.0 498410.0 520020.0 448950.0 429420.0 486940.0 475010.0 422060.0 539930.0 444320.0 False True 411224.0311386133 514999.27555479226 593234.2959051318 505787.02396811976 484104.0916282506 453278.983933465 452031.95158558374 453556.26037725375 406871.4861913295 415963.11719850963 0.9886069560882853 1.2380887974474422 1.4261704256390195 1.2159419983544926 1.1638149432302243 1.089709556429608 1.0867116167173567 1.0903761454427308 0.9781431799328464 1.0 18.66609608695273 2.76770606702904 1.6411735060585877 1.0499926911159747 1.2321364459763302 0.3760781894337405 0.10386310682642784 0.42180934989447877 2.2723966923772667 0.04245254382786468 0.04215535348224553 585.7415970912995 -2.76770606702904 0.1821437548603555 QWSGS(ph)QDSQMGFPR ddPTM_BT-474_Trastuzumab_2h_R1 2 QWSGSQDSQMGFPR 14 0 Q96HB5-2;Q96HB5;Q96HB5-5;Q96HB5-3;Q96HB5-4 Q96HB5-2 CCDC120 Coiled-coil domain-containing protein 120 1 QWSGS(0.998)QDS(0.001)QMGFPR;QWSGS(1)QDSQMGFPR 226.67 2.4301e-12 364400000.0 240730.0 236510.0 238110.0 262760.0 258850.0 275150.0 275730.0 225700.0 281460.0 284690.0 True False 239433.93642761718 244382.09237668608 271633.8183107784 296025.38905861013 291813.01317584806 256129.52813343104 262391.88650911127 242542.88008137772 212097.9543707732 266520.8404646283 0.8983685328704868 0.9169342703206717 1.0191841577463008 1.1107025947484868 1.0948975422226932 0.9610112578322881 0.9845079508667353 0.9100334505119766 0.7958025121075741 1.0 18.02388882265362 1.7464259788204723 2.8065777164400902 0.8857943581578803 1.0045937960586566 0.23638896558746136 0.07859169413725674 0.3319298204575392 5.403875101989345 0.04984256493044891 0.023041821360899672 55.773253407062036 -1.7464259788204723 0.1187994379007763 QWTEILHFTEHSGLTTGVAFGHHAK ddPTM_BT-474_Trastuzumab_2h_R1 3 QWTEILHFTEHSGLTTGVAFGHHAK 25 0 Q9UMS4;H0YGZ5 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 0 ;; 161.04 6.549e-12 796127000.0 620521.0 786996.0 795551.0 779132.0 777974.0 899017.0 843132.0 187571.0 906126.0 648197.0 False True 617180.1838823641 813190.6861108711 907557.6657467466 877770.0313137966 877044.3774868331 836870.0708483835 802346.4840829816 201568.5004862385 682823.3887663307 606828.5125106287 1.017058643683217 1.3400667064018816 1.495575186459042 1.4464877856220086 1.445291971958011 1.3790882491430816 1.3221964155300439 0.33216715485613907 1.1252328700595968 1.0 19.210929348240757 1.859465202620749 9.053370576165403 0.7571425761380092 1.3657218554525739 0.5230980680048314 0.22968081392579626 0.21155731427142238 14.804950356434558 0.09310511661495217 0.05871753127495704 72.35444267370279 -1.859465202620749 0.6085792793145647 QWTSLS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 2 QWTSLSLR 8 0 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2;F8VVQ7 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 QWTS(0.001)LS(0.999)LR;QWTS(0.002)LS(0.998)LR 62.633 0.082245 162728000.0 465300.0 236230.0 260350.0 270280.0 178376.0 219860.0 249540.0 213400.0 264590.0 301740.0 True False 462794.8764996898 244092.77274594922 297005.0169972326 304497.4202875672 201091.12628261524 204661.5956947707 237468.79686462745 229324.99162324332 199385.33982435468 282482.6948673889 1.638312310483119 0.8640981454121931 1.0514095992204449 1.0779330055262786 0.7118706028240673 0.7245102068671809 0.8406490067510395 0.8118196115726649 0.7058320507667056 1.0 18.107802963933825 7.5418930956290104 0.9484644123643434 0.8261502558932485 199.99999982524795 0.7372294338985887 0.13639543877777086 228.18386223032346 1.0608009878594342 0.04145989519175576 97706.52270715157 34825158.01252513 -7.5418930956290104 199.1738495693547 QWYESHYALPLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 QWYESHYALPLGR 13 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ;;; 185.95 8.2242e-06 9678110000.0 6977470.0 6987470.0 6209700.0 6597710.0 6056910.0 6516440.0 5656550.0 5556100.0 7065960.0 6499140.0 False True 6939904.076789794 7220043.714935184 7083971.784320023 7432979.40952156 6828221.5863817865 6065973.840849768 5382921.0663805725 5970724.395304135 5324648.837013104 6084359.321006311 1.1406137788131128 1.1866563649533175 1.1642921482073783 1.221653590355705 1.1222581090513972 0.9969782389259841 0.88471452496173 0.9813234360913152 0.8751371436314914 1.0 22.53667392543169 2.7310208382510894 2.6002024612469237 0.9371555966631099 1.1774906447855584 0.8793695937701407 0.041390253507395294 0.08296082178455318 1.114626619243144 0.013233033588016084 0.01312607576314518 538.2956103139009 -2.7310208382510894 0.24033504812244855 QY(ph)T(ph)FKMNEDT(ph)QEEPGKSEEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 QYTFKMNEDTQEEPGKSEEEK 21 2 A0A087WZU3;A0A5F9ZI30;A0A5F9ZHS1;A0A5F9ZGX3;A0A5F9ZHE4;D6RHE1;A0A5F9ZHR8;A0A5F9ZHD2;A0A5F9ZGY3;I6L894;A0A5F9ZI40;A0A5F9ZHN5;A0A5F9ZH19;A0A5F9ZHT8;A0A5F9ZI46;A0A5F9ZI65;A0A5F9ZGZ5;A0A5F9ZHT4;A0A5F9ZHF7;A0A5F9ZGY4;A0A5F9ZH30;Q01484 A0A087WZU3 ANK2 Ankyrin-2 3 QY(0.991)T(0.981)FKMNEDT(0.738)QEEPGKS(0.29)EEEK 90.468 0.0022833000000000003 195620000.0 392940.0 141720.0 120360.0 65121.0 98131.0 139880.0 96521.0 123300.0 251770.0 122190.0 True False 390824.4546997381 146437.06452845098 137305.64181212566 73365.31192299347 110627.40118199374 130210.42484210189 91851.91048397332 132501.2721047137 189724.65704515576 114391.72958787782 3.416544675981139 1.2801368163242548 1.2003109167664516 0.6413515398998569 0.9670926524194894 1.1382853053381963 0.8029593644128878 1.1583116417775972 1.6585522198910876 1.0 16.803623224858455 4.753223969990411 3.3726124581180934 1.0566043377626064 3.7673507072954218 0.8827298460551756 0.25487903413057317 0.10374345499002068 1.9192039926710518 0.06246029507713964 0.7394527526634238 56653.137959056214 -4.753223969990411 2.7107463695328153 QYADKLEFMHILTR ddPTM_BT-474_Trastuzumab_2h_R1 2 QYADKLEFMHILTR 14 1 P42574 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 0 ; 222.57 2.3092e-12 1496080000.0 3374700.0 3310500.0 3077200.0 3104400.0 2828300.0 3323100.0 3142600.0 3011800.0 3977100.0 3489100.0 False True 3356530.990164415 3420687.991260494 3510443.0124981157 3497416.7216986967 3188467.240352522 3093381.918735979 2990580.4321021787 3236555.809610516 2996996.9954096577 3266422.650831202 1.0275862461675873 1.047227611647267 1.0747056911342499 1.0707177531997318 0.9761343160968949 0.9470243901072662 0.9155521963274318 0.9908564064074543 0.9175165971393862 1.0 21.639280046325293 3.1410996351952916 4.532833742557675 0.954303311078749 1.0557959684095115 0.7443725569342953 0.02808727930046301 0.10255769208998676 3.6826334508916267 0.008079418276018251 0.009847104123182565 1383.883831129733 -3.1410996351952916 0.10149265733076251 QYAENYTRPSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 QYAENYTRPSSR 12 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 QYAENYTRPS(0.222)S(0.777)R 70.47 0.028581 308130000.0 180590.0 176040.0 162390.0 168820.0 166750.0 176530.0 171570.0 154630.0 210720.0 203380.0 True False 179617.72350543502 181899.38498157263 185253.10048081668 190192.59469049532 187984.62409531645 164326.8966069217 163270.50363895218 166169.2757952302 158790.87950333752 190400.11427762182 0.9433698303538567 0.9553533393175684 0.9729673807374911 0.99891008685623 0.9873136095980313 0.863060913751959 0.8575126346872248 0.8727372692273666 0.8339852111212761 1.0 17.5386748189845 2.737453183897634 24.988244142586186 0.8750000092144711 0.9722763101197541 0.47587056085973356 0.04451809820809286 73.22224549147923 1652178.4197684175 0.013156397265627182 0.013070391925221353 546.3276536465906 -2.737453183897634 0.09727630090528305 QYASYEFVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QYASYEFVQR 10 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 74.562 0.066874 0.0 153390.0 173030.0 188860.0 189540.0 155330.0 169720.0 183600.0 117140.0 204100.0 172800.0 False True 152564.1652832311 178789.1989511561 215449.84639945228 213535.74456602611 175110.35478695921 157987.65587790607 174718.56657988933 125881.58162486757 153802.28979988198 161771.75605847698 0.9430828285506306 1.1051941532150253 1.3318137334280518 1.3199816195902427 1.0824531985896266 0.9766084001758438 1.080031340679348 0.7781431363047336 0.9507363556360592 1.0 17.303600222184716 2.581948492582691 1.5985621513000967 0.9134628574188031 1.178198874357055 0.3866979299343112 0.12625857376278415 0.3696265107787563 1.9041777329846281 0.05857380857961667 0.04969245008494431 381.8989748549399 -2.581948492582691 0.264736016938252 QYDPPAESQQSES(ph)PPRR ddPTM_BT-474_Trastuzumab_2h_R1 2 QYDPPAESQQSESPPRR 17 1 Q6P597;Q6P597-3;K7ENJ3;K7EL76 Q6P597 KLC3 Kinesin light chain 3 1 QYDPPAESQQS(0.012)ES(0.988)PPRR;QYDPPAESQQS(0.104)ES(0.896)PPRR 174.01 8.6174e-10 1821020000.0 649120.0 710820.0 737840.0 752620.0 677040.0 765500.0 831870.0 650140.0 724640.0 794340.0 True False 645625.2100440119 734479.2140002353 841721.4585797515 847901.614832133 763257.0308695221 712582.7867931725 791629.2700479979 698656.7481440263 546062.181678523 743644.5411313112 0.8681906130337731 0.9876751234976692 1.1318868249866196 1.1401974571644335 1.0263734736872732 0.9582303740293927 1.0645264320016217 0.9395036331217537 0.7343053723594811 1.0 19.504253658552184 1.5237839568004115 4.8368319498961165 0.8576504741119917 1.02886423657399 0.3035453131938005 0.09631929438209912 0.17431791741302713 8.940452971537749 0.05778213793252888 0.02490640523906709 33.40288334235669 -1.5237839568004115 0.17121376246199826 QYEMGECTR ddPTM_BT-474_Trastuzumab_2h_R1 3 QYEMGECTR 9 0 P0DN76;Q01081;Q8WU68-3;Q8WU68;Q01081-2;Q01081-4 P0DN76;Q01081-2;Q01081-4 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit 0 ;; 223.93 7.6429e-07 2561000000.0 856159.0 929915.0 883951.0 955492.0 873635.0 968082.0 887575.0 833102.0 1112002.0 954967.0 False True 851549.535072208 960866.6586295118 1008403.6173601721 1076457.1892311976 984887.2388096654 901160.7699599062 844639.6063842329 895272.3016462382 837964.0071633924 894020.1884716167 0.9524947490592859 1.0747706494997316 1.1279427806704243 1.2040636253097017 1.1016387006801174 1.0079870472505736 0.9447656968778266 1.0014005423935248 0.9372987522753196 1.0 19.769947884681006 2.6322286316501886 3.7893929594275537 0.9737427677769559 1.0994292651021158 0.4669878003675516 0.06143987508871766 0.2214944355837951 5.741819060881212 0.021896242610147585 0.020564250204078986 428.774186516705 -2.6322286316501886 0.1256864973251599 QYGSEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 QYGSEGR 7 0 Q9BVK6;Q7Z7H5-3;Q7Z7H5;F8W7F7;Q7Z7H5-2 Q9BVK6;Q7Z7H5-3 TMED9;TMED4 Transmembrane emp24 domain-containing protein 9;Transmembrane emp24 domain-containing protein 4 0 89.296 0.067322 0.0 258600.0 332380.0 349200.0 349400.0 337810.0 245730.0 291110.0 262000.0 280900.0 280800.0 False True 257207.72633316123 343443.06737204664 398364.3246991889 393634.0041752112 380828.1011432611 228743.26348620022 277027.89715180587 281551.770409043 211675.95886715798 262879.10359502485 0.9784259106779344 1.3064677362150992 1.5153898474672376 1.4973955662205056 1.4486815267368727 0.8701462396896629 1.0538224353449477 1.0710313849927917 0.8052217006691136 1.0 18.004039940325807 2.7409737634504285 24.999006622409137 0.9810542953755816 1.3643519472652952 0.5937235910145809 0.16027531854859545 163.5336663265508 1694133.0813472928 0.05253834358224989 0.05339010370037835 550.774422077667 -2.7409737634504285 0.38329765188971354 QYKDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 QYKDYK 6 1 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6;H0YDE4 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 66.79899999999999 0.091617 606460000.0 1067000.0 1462400.0 1320000.0 1384200.0 1497300.0 1570300.0 1730000.0 1536300.0 2407600.0 1893100.0 False True 1061255.3905548446 1511075.0999605313 1505844.5263543192 1559439.5780747773 1687972.2798075972 1461748.8570885942 1646313.2907582147 1650946.5071733296 1814279.2401871453 1772280.7372355468 0.5988077217440283 0.852616105458297 0.8496647820610959 0.879905505550568 0.9524294003446337 0.8247840347058509 0.9289235368693226 0.9315378046417873 1.0236974323927421 1.0 20.757175720698747 5.364619111884008 0.8494075454742934 0.932358038032412 1.0819952284762406e-35 0.7643813754318396 0.055121469192056446 2.8919693571859875 0.7594797552775397 0.01775784108498711 3.2389251483007695 231536.31225829636 -5.364619111884008 -0.932358038032412 QYMEGFNDELEAFKER ddPTM_BT-474_Trastuzumab_2h_R1 4 QYMEGFNDELEAFKER 16 1 Q16543;K7EKQ2;K7EQA9;K7EL68 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ;;; 212.72 3.4360000000000007e-12 688770000.0 277879.0 299086.0 278165.0 329398.0 285559.0 345161.0 373916.0 316076.0 540670.0 372012.0 False True 276382.93033925927 309040.8967086953 317328.21414647717 371099.75302606256 321923.2460092018 321300.8324915982 355828.25458216714 339663.1961214066 407429.12310682185 348269.87566450343 0.7935883912207942 0.8873604015249417 0.911156078432023 1.0655522597755531 0.9243499610609964 0.9225628024202555 1.0217026491402457 0.9752873270285719 1.1698661055006316 1.0 18.409846163815743 6.440361742523457 0.39048028216189246 1.0286000080724742 7.492616063281232e-13 0.5352256158349504 0.06760729863366963 17.198037482184873 0.7205110133730238 0.05025867093523592 10.901753184619057 2756523.7743962333 -6.440361742523457 -1.028600008071725 QYNGVPLDGRPMNIQLVTSQIDAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 QYNGVPLDGRPMNIQLVTSQIDAQR 25 1 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 218.93 1.2600999999999998e-33 632540000.0 380660.0 412670.0 427900.0 464150.0 430950.0 444760.0 422260.0 351110.0 506130.0 455320.0 False True 378610.5688553021 426405.47148571664 488144.60062652524 522911.34240962873 485828.9280592299 414014.7880524254 401833.67061015253 377311.6111004545 381401.04329453397 426261.0877809364 0.8882128341254486 1.000338721288241 1.1451774853945664 1.2267395673666621 1.1397449637929573 0.9712704253811585 0.9426937671042177 0.8851655051712393 0.8947592314373841 1.0 18.70137783603057 2.54361633607183 3.9011679643993173 0.920570957213547 1.0868277936862525 0.380692882096925 0.09041452874788262 0.2470152751063517 7.352154085088372 0.03403719201740042 0.030996659678238156 349.6361553876839 -2.54361633607183 0.1662568364727055 QYPDSPHPVPHR ddPTM_BT-474_Trastuzumab_2h_R1 1 QYPDSPHPVPHR 12 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 0 71.085 0.026334 105780000.0 96402.0 88259.0 98593.0 91895.0 93461.0 93059.0 95300.0 58261.0 102220.0 88155.0 False True 95882.98234326919 91196.64746130783 112474.0374142814 103528.89757779347 105362.70436325246 86626.05036732301 90689.97491864636 62608.7316633635 77029.25067782428 82528.87242670738 1.1618113700562356 1.1050271835750352 1.3628447124873522 1.2544567074963477 1.276676892160661 1.0496453885790609 1.098887846785823 0.7586282209170535 0.9333612396829094 1.0 16.332611308843784 2.222981193550738 1.7484844694969075 0.8821886747838479 1.229140149089196 0.6505295454754099 0.0997721388546572 0.20129713122664072 1.223458375232265 0.0526684155589898 0.0324620559521944 167.1018251889091 -2.222981193550738 0.3469514743053481 QYPEFPWTDVQAEIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 QYPEFPWTDVQAEIFR 16 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 145.49 2.8259e-06 75038000.0 37199.0 46466.0 37706.0 41632.0 36439.0 42151.0 32387.0 34313.0 42828.0 45703.0 False True 36998.72471719743 48012.59272070986 43014.67705357277 46902.60693137489 41079.290659125785 39237.20058278121 30820.31707964531 36873.61029788351 32273.613265797918 42786.19541169314 0.8647350941394047 1.1221514850462349 1.0053400784921669 1.096208870175841 0.9601061805999963 0.917052806524087 0.7203332005355717 0.8618109168876052 0.754299674351924 1.0 15.384857778428753 2.6752171921248973 2.4715627845249375 0.8238287451128281 1.0256620737039335 0.4174549043526734 0.09652497633421343 0.23742032906825472 2.858123520927567 0.03168190078637996 0.03028994931617751 473.3879426689444 -2.6752171921248973 0.20183332859110537 QYPWGVAEVENGEHCDFTILR ddPTM_BT-474_Trastuzumab_2h_R1 4 QYPWGVAEVENGEHCDFTILR 21 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4 E7EPK1 SEPT7 Septin-7 0 ;;; 310.92 1.5733999999999999e-66 1918590000.0 868480.0 967350.0 870660.0 867730.0 875600.0 1000810.0 853050.0 832351.0 1027070.0 992880.0 False True 863804.200177199 999547.6599745767 993241.3600876164 977584.5290296392 987102.4699121964 931626.3603533302 811784.7125325418 894465.2582127376 773962.3605329011 929513.5483526665 0.9293078102068322 1.0753449067482967 1.0685603903761185 1.0517162775756916 1.0619559786531267 1.0022730298061906 0.8733436042661562 0.9622939437493478 0.8326531247495622 1.0 19.82611636809018 2.411032227681772 5.1808091799124005 0.9182450655474712 1.0412824458069374 0.49437687286083265 0.0574735820539164 0.15754569057127943 8.163622187990018 0.019134768652417145 0.015980993293908678 257.65123451078523 -2.411032227681772 0.1230373802594662 QYPWGVVQVENENHCDFVK ddPTM_BT-474_Trastuzumab_2h_R1 3 QYPWGVVQVENENHCDFVK 19 0 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;E7EW69;E7EX04;B5ME97;Q9P0V9;Q9P0V9-2;Q9P0V9-3;A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599-2;Q92599-4;Q92599;Q92599-3 D6RGI3;E7EW69;A0A087X142 SEPT11;SEPT10;SEPT8 Septin-11;Septin-10;Septin-8 0 ;; 298.34 8.6207e-50 1324880000.0 1044050.0 834550.0 871500.0 887179.0 871200.0 982360.0 944450.0 878450.0 1149290.0 1057100.0 False True 1038428.9508048604 862327.4922538715 994199.6247862051 999495.7704354877 982142.1559930408 914451.7654267033 898763.3453506352 944004.3996787166 866062.8791969935 989634.972971158 1.0493050257583454 0.8713591534310129 1.0046124600885342 1.0099640753749082 0.9924287063586469 0.9240293546632311 0.9081766205698036 0.9538915109725298 0.8751336632706432 1.0 19.916536959432296 2.7348363951787187 24.09950172843908 0.9294826170339827 0.9816079983460663 0.20433434903029368 0.05214790883224328 324.5405118645725 2100100.5386372213 0.015836633243119035 0.015485140036005821 543.0457200171904 -2.7348363951787187 0.05212538131208355 QYQDFLEDLEEDEAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 QYQDFLEDLEEDEAIR 16 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 ; 136.17 4.3977e-05 29605000.0 36639.0 43708.0 39407.0 41902.0 37852.0 45807.0 45250.0 42375.0 42226.0 41947.0 False True 36441.739694975586 45162.79435795603 44955.16306821567 47206.78890369115 42672.227833618665 42640.46990807949 43061.08462821347 45537.23767589002 31819.968099411173 39269.9065473665 0.9279813195129547 1.150061162062651 1.1447738744677616 1.2021110579102436 1.0866394036906697 1.0858306947241518 1.0965415610621363 1.1595962832497195 0.8102888674061555 1.0 15.261136544301625 1.2467695694236942 24.999999873501142 0.9051444142313905 1.1129446689535647 0.4933669273937943 0.08149883740624803 119.95512750948882 365325.78938061965 0.05355947809268096 0.018826466911071604 17.65101034270288 -1.2467695694236942 0.20780025472217423 QYQDFLEDLEEDEAIRK ddPTM_BT-474_Trastuzumab_2h_R1 2 QYQDFLEDLEEDEAIRK 17 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 ; 324.46 8.3996e-59 238140000.0 212453.0 202972.0 192088.0 196402.0 185672.0 239230.0 215970.0 206326.0 308020.0 245350.0 False True 211309.17665374736 209727.800320835 219132.32074117326 221266.47306244922 209316.22863583555 222692.59318684624 205522.70601448097 221723.09382219898 232112.59825653918 229691.55294529677 0.9199692977132365 0.9130845154361583 0.9540286437671555 0.96332002733747 0.9112926703303111 0.9695288761440983 0.8947769449032728 0.965308001008659 1.010540419445982 1.0 17.809338276089473 1.4386114687952534 4.269250701593421 1.0032789002292308 0.9339195955699233 0.614185524964241 0.02306311245991132 0.13288597926100193 4.436526884686036 0.015445430688011259 0.0056756589166160835 27.45436914426426 -1.4386114687952534 -0.06935930465930751 QYSLQNWEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 QYSLQNWEAR 10 0 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2;A0A2R8Y6Q7 A0A2R8Y430 GSS Glutathione synthetase 0 217.45 1.6853e-08 367130000.0 98882.0 113420.0 143080.0 96252.0 53965.0 87717.0 104970.0 61504.0 168370.0 91637.0 False True 98349.6302988231 117195.11613616218 163224.42032634572 108437.49333105997 60837.12287438522 81653.33025360771 99892.20007565906 66093.74079098381 126877.46954241136 85788.64820561728 1.1464177645403597 1.366091185575861 1.9026342498733775 1.2640074834977955 0.709151200617726 0.9517964434863446 1.1643988122558888 0.7704252505829333 1.478954059729591 1.0 16.388499138452005 3.4732645702622738 24.941412421331826 0.9925746837325791 1.4815135510696043 0.37923330605656935 0.2646582365493702 100.58270800732998 650470.2032402793 0.07163274999403489 0.0974258888907951 2973.476908969922 -3.4732645702622738 0.4889388673370252 QYYTLLNQAPDMLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 QYYTLLNQAPDMLHR 15 0 Q13283;E5RH42;E5RJU8;Q13283-2;E5RIF8;E5RI46;E5RH00 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ; 180.62 6.2163e-07 2221660000.0 1606970.0 1757140.0 1506020.0 1517870.0 1423040.0 1609270.0 1320700.0 1362880.0 1946530.0 1635290.0 False True 1598318.2520711531 1815625.3426864385 1718054.5254394966 1710032.186369284 1604255.708981102 1498024.9527141056 1256812.6954360553 1464585.0261644116 1466833.7636656766 1530924.392157792 1.0440216775293334 1.1859666956689932 1.1222334259224587 1.1169932330616568 1.047900025108328 0.9785100821358553 0.8209502062114351 0.956667118028032 0.9581359936386005 1.0 20.545971603466572 2.8610145168960304 2.160976099056591 0.9279201772352842 1.1224370106571038 0.6958134401399811 0.05466609244214443 0.1604830543641936 1.477768146558143 0.01843502656512515 0.019778844897708227 726.1302289405568 -2.8610145168960304 0.19451683342181958 RAAATQPDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAAATQPDAK 10 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 107.45 0.0036585 184796000.0 260173.0 286940.0 262680.0 259990.0 278810.0 255980.0 313410.0 289480.0 462850.0 308360.0 False True 258772.25747593795 296490.6244411071 299663.0607445101 292904.7073426245 314314.80086365854 238284.70511210512 298249.1609575335 311082.46754965564 348786.8193722461 288680.2007997223 0.8963976634319526 1.027055626328885 1.0380450751882613 1.0146338631163452 1.0887993010706016 0.8254279457059819 1.0331472686083167 1.0776023665214067 1.2082117803923242 1.0 18.139112637820983 1.728271865831972 3.3584715716242113 1.1114820208515002 0.9895528887000146 0.2508051777329474 0.08550196455871627 0.27717204868167067 6.780333915394281 0.0471316659636408 0.02239015737190015 53.48990983532855 -1.728271865831972 -0.1219291321514856 RAADEDWDS(ph)ELEDDLLGEDLLSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RAADEDWDSELEDDLLGEDLLSGK 24 1 Q96EV2;A8MTF7;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 RAADEDWDS(1)ELEDDLLGEDLLSGK;RAADEDWDS(1)ELEDDLLGEDLLSGK;RAADEDWDS(1)ELEDDLLGEDLLSGK;RAADEDWDS(1)ELEDDLLGEDLLSGK 177.55 2.5834000000000003e-17 514320000.0 282229.0 248215.0 215524.0 226517.0 240775.0 294099.0 275493.0 288514.0 401448.0 308319.0 True False 280709.5104225894 256476.68622586396 245867.90583180956 255194.02897468887 271436.2690647659 273768.6283645792 262166.3511045395 310044.3797244068 302516.5195275998 288641.8174548239 0.9725185106503981 0.888563855672111 0.8518097204341883 0.8841200877438004 0.9403913523626878 0.9484718145783831 0.9082757079908281 1.0741492083798034 1.0480689256848499 1.0 18.13892080220873 1.7572173612174111 8.823268096347746 1.044632670165453 0.9113162211737481 0.7124571037701412 0.03699689604302813 0.07454799734545207 21.70259270596094 0.018424072202092436 0.010021344971460589 57.17647291447841 -1.7572173612174111 -0.1333164489917048 RAAEDDEDDDVDTK ddPTM_BT-474_Trastuzumab_2h_R1 7 RAAEDDEDDDVDTK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 0 ;;;;;; 277.41 6.2316e-33 30298770000.0 22225590.0 18633970.0 16225800.0 16109800.0 15314430.0 23055380.0 22700590.0 19617690.0 32961770.0 23371010.0 False True 22105929.892935183 19254190.42697728 18510251.60281815 18149299.028224975 17264631.88476183 21461615.847126808 21602475.73702491 21081661.644411344 24838783.448589254 21879452.132871654 1.01035116230005 0.8800124568955644 0.8460107451689056 0.8295134136817575 0.7890797164351055 0.9809027994299231 0.9873407983817559 0.9635369988418626 1.1352561891287718 1.0 24.38307327733812 2.5762806850938174 5.95020517133154 1.0084040941271575 0.8681015931285978 0.5200205240258806 0.06876272871823434 0.20473562891664718 10.169329218009043 0.023107501233783526 0.02165629568595601 376.9473418363027 -2.5762806850938174 -0.14030250099855968 RAAEDDEDDDVDTKK ddPTM_BT-474_Trastuzumab_2h_R1 7 RAAEDDEDDDVDTKK 15 2 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 0 ;;;;;; 206.74 2.1049e-09 28623855000.0 12773420.0 9833723.0 8979211.0 7841793.0 7349331.0 12816670.0 12403450.0 10474040.0 21475380.0 12974580.0 False True 12704649.32598038 10161032.525443926 10243405.86009888 8834563.189762857 8285224.739952345 11930683.770095956 11803447.737719644 11255666.050897455 16183060.354348807 12146531.196303193 1.0459487668254663 0.8365378033636834 0.8433194378339447 0.7273321944335568 0.6821062413665855 0.9822297063483498 0.9717546142977868 0.9266568264627787 1.3323194986955729 1.0 23.53404103233028 1.416606317011412 4.3829795599653 1.1658463884135652 0.8649189103301618 0.43919435716039323 0.13040430999122252 0.18735251503039302 6.121621958371471 0.09387155143093408 0.03371890889503363 26.097945328704235 -1.416606317011412 -0.3009274780834035 RAAEEAEEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 RAAEEAEEAR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 129.82 0.00046984 664300000.0 461711.0 626880.0 529954.0 562773.0 578778.0 565564.0 605210.0 448468.0 692986.0 564189.0 False True 459225.1992769149 647745.3218430377 604566.9167572564 634020.0040975845 652481.9476140263 526467.8918744525 575933.6801732832 481934.9594343606 522208.8858366547 528181.9749934962 0.8694450417066383 1.226367715125102 1.1446186075636162 1.2003817512049546 1.2353355065213285 0.9967547489308684 1.090407676597398 0.9124411325098607 0.9886912287059492 1.0 19.010675542637742 2.300417564735253 1.7941582253183388 0.9702334438080203 1.1403067256783617 0.2648884108902526 0.10728202280564256 0.4142652370267613 2.7000697496842436 0.05106732985646932 0.03431219328107482 199.7181639003253 -2.300417564735253 0.17007328187034132 RAAPT(ph)TPPPPVK ddPTM_BT-474_Trastuzumab_2h_R1 3 RAAPTTPPPPVK 12 1 Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3;C9JC20;C9JMQ4;C9JSC3 Q9NZQ3-5 NCKIPSD NCK-interacting protein with SH3 domain 1 RAAPT(0.824)T(0.176)PPPPVK;RAAPT(0.563)T(0.437)PPPPVK;RAAPT(0.5)T(0.5)PPPPVK 73.834 0.022345 1236460000.0 1528930.0 1525590.0 1394340.0 1255900.0 1382880.0 1780830.0 1710690.0 1481290.0 2285700.0 1869140.0 True False 1520698.4107600928 1576368.3409113693 1590650.9521794592 1414896.8112296714 1558981.5710280722 1657725.413722905 1627937.38922958 1591831.3816382103 1722419.8618108328 1749849.8849487354 0.8690450671456563 0.9008591848194747 0.909021377125764 0.8085818237323387 0.8909230354201183 0.947352928946514 0.9303297404150032 0.9096959661113133 0.984324356406889 1.0 20.738799731650776 1.5430948466027645 0.5583574375437024 1.0015583258495149 0.8750497523830684 0.6098054622396794 0.032812437069605425 0.568304161705291 0.42021185174052134 0.034325624291426396 0.019185231533946936 34.921657338758905 -1.5430948466027645 -0.1265085734664465 RAAS(ph)SDQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RAASSDQLR 9 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 RAAS(0.965)S(0.035)DQLR;RAAS(0.994)S(0.006)DQLR;RAAS(0.982)S(0.018)DQLR 113.61 0.0010852 1889140000.0 278216.0 376956.0 342583.0 346676.0 324084.0 343533.0 306334.0 248153.0 385377.0 305435.0 True False 276718.11596870364 389502.7525852863 390815.7086151833 390565.14605450915 365354.1764036372 319785.3722996981 291515.4541104784 266671.4369554014 290406.00213723263 285941.8768039402 0.9677425323693983 1.3621745682684805 1.3667662567772512 1.3658899858250046 1.2777218240549881 1.118357953980148 1.0194919938584575 0.9326071435778123 1.0156120026321058 1.0 18.125362395676092 2.479822336982071 2.2117099087652563 0.977499272191795 1.2852016194415894 0.5742316009796147 0.11177846652651131 0.2089897854600856 2.0688961339062173 0.044545367044153975 0.03698612685307173 301.87165584779757 -2.479822336982071 0.3077023472497944 RAAS(ph)SDQLRDNS(ph)PPPAFKPEPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAASSDQLRDNSPPPAFKPEPPK 23 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 RAAS(0.947)S(0.053)DQLRDNS(1)PPPAFKPEPPK 106.69 0.0020374000000000004 1146100000.0 725640.0 586410.0 438040.0 542960.0 448600.0 610010.0 626600.0 721630.0 1173200.0 837310.0 True False 721733.2348661831 605928.3023576686 499712.22448806604 611698.680329057 505726.55093948334 567841.4445090834 596288.9641555477 775481.6949628914 884080.580074579 783872.1589428429 0.9207282420127506 0.7729937789535025 0.6374919925233666 0.7803551553023839 0.6451645783944204 0.7244056802258343 0.7606966995226921 0.9892961321763651 1.1278377092342209 1.0 19.580258860029726 1.6703317532828843 3.1939244135524687 1.0640313539715756 0.7396453286713365 0.7381722006752622 0.07988894964830472 0.09971974428037529 2.370113515081686 0.0485453745064286 0.02147867084057701 46.80925760639282 -1.6703317532828843 -0.3243860253002391 RADAGEKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 RADAGEKPK 9 2 P47897;A0A1B0GVU9;P47897-2;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RQX9 P47897 QARS Glutamine--tRNA ligase 0 ;; 126.71 0.00026206 417100000.0 753510.0 692420.0 615350.0 620240.0 637190.0 631290.0 811280.0 794520.0 1214290.0 929760.0 False True 749453.1858828312 715466.7811232706 701985.9312819176 698762.3204053596 718332.369578977 587650.4081968154 772035.2870094371 853811.1168908121 915044.50015237 870421.9207924164 0.8610228763546564 0.821976979246941 0.8064892605678431 0.8027857567847314 0.8252691624827418 0.6751328225532613 0.8869667325319542 0.9809163768687233 1.0512654590768233 1.0 19.731355364458295 1.8034143704352648 2.7968368625540236 1.018866410553939 0.8010092080159087 0.7849502598582263 0.0493492292115543 0.11063091574048156 1.633055897094039 0.027979457803280105 0.013597049345002662 63.59374051044681 -1.8034143704352648 -0.2178572025380302 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 3 RADDFPVRDDPSDVTDEDEGPAEPPPPPK 29 2 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK 143.22 7.9613e-08 4252340000.0 2086220.0 1984910.0 1792680.0 1690830.0 1855930.0 2314570.0 2154370.0 2095610.0 2540010.0 2262410.0 True False 2074988.0233208314 2050976.529446567 2045073.7617461102 1904888.9046352953 2092271.6845410534 2154569.223811721 2050154.8926073879 2251995.0594919594 1914058.5698902437 2118021.056853351 0.9796824335653905 0.9683456747562325 0.9655587488749449 0.8993720333759586 0.9878427212850507 1.0172558090676718 0.9679577480939736 1.063254329887375 0.9037013884714983 1.0 21.01428550165107 3.0201269926838403 24.921691767116073 0.998583952303373 0.9537497312878834 0.1364413778632002 0.04295986499785521 372.0236178704562 460644.7368676878 0.01206555179220923 0.014419354877165108 1047.4347852106528 -3.0201269926838403 -0.04483422101548962 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPKLPLPAFR ddPTM_BT-474_Trastuzumab_2h_R1 3 RADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAFR 36 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR 253.1 1.2477999999999996e-61 892960000.0 158648.0 190659.0 168233.0 224801.0 201776.0 224578.0 214692.0 204485.0 317791.0 235103.0 True False 157793.85679544974 197004.9695592008 191918.7440925505 253260.78355063434 227470.97757994934 209053.4514597482 204306.527756915 219744.7090537907 239475.66623123144 220098.52525819512 0.7169237349970589 0.8950762815339016 0.8719674239862024 1.150670061298852 1.0334961459333072 0.9498175928916831 0.9282503256995716 0.9983924644475043 1.0880384861747947 1.0 17.747789953106462 4.528826414510828 1.4513467195627832 1.0089651399116468 0.6774430115433845 0.6280952802750024 0.07040435277748981 0.5439045682109608 1.4131333858894242 0.020063176854096237 0.23366779563688272 33792.97402600729 -4.528826414510828 -0.33152212836826234 RADLNQGIGEPQS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 RADLNQGIGEPQS(0.963)PS(0.037)R 56.404 0.077713 1014100000.0 832970.0 630360.0 607640.0 577600.0 571130.0 777760.0 805290.0 737630.0 1301500.0 738870.0 True False 828485.3820716664 651341.1515393336 693190.4302984388 650724.100777337 643860.0201472741 723995.2818501085 766335.0461934597 792675.6962092455 980762.7642065 691714.6840215671 1.19772704152372 0.94163267975243 1.0021334609644135 0.940740620097994 0.9308173370036469 1.0466675040652091 1.1078773718349544 1.1459575956963934 1.4178718290385761 1.0 19.399817557344935 1.9763246551299718 1.822773794258014 1.210424534282244 0.9976433256155114 0.31153464399095665 0.11939085264180296 0.372134703714303 2.2995342772983363 0.07022867092784031 0.03472042960382488 94.69447816865322 -1.9763246551299718 -0.21278120866673256 RADLNQGIGEPQSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 RADLNQGIGEPQS(0.388)PS(0.612)R 104.88 0.0010972000000000002 0.0 86982.0 90606.0 79885.0 88835.0 93063.0 99602.0 101550.0 87669.0 116010.0 104990.0 True False 86513.69857660879 93621.76593751641 91132.11362713262 100081.50189154221 104914.02142238322 92716.7481778883 96637.63854132759 94211.30595416161 87420.88995435742 98289.4483135387 0.8801931444424652 0.9525108497797993 0.9271810473126829 1.0182324105868104 1.067398619307664 0.9433031700628357 0.9831944343919612 0.9585088488199872 0.8894229386199107 1.0 16.584748926503778 4.762885802332998 1.4051133985162756 0.9766720506336265 0.8407630278493066 0.27525251635326 0.04646381236529734 1.8518818069277847 3.1475520894543103 0.013170393713330673 0.36149254237281203 57927.63557704191 -4.762885802332998 -0.13590902278431993 RADS(ph)GEEENTK ddPTM_BT-474_Trastuzumab_2h_R1 3 RADSGEEENTK 11 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 RADS(0.722)GEEENT(0.278)K;RADS(1)GEEENTK;RADS(1)GEEENTK 210.62 7.4187e-09 911486000.0 1087117.0 913967.0 752588.0 771858.0 908443.0 838966.0 1080004.0 962643.0 1358576.0 1065474.0 True False 1081264.0828620521 944387.8390902821 858545.8487878375 869575.1436596153 1024127.831286485 780970.2551335347 1027760.0805040682 1034480.3088621061 1023773.1487857166 997474.5371218153 1.0840016888872264 0.9467788940410315 0.860719564095488 0.8717767835645709 1.026720776493781 0.7829475601322139 1.0303622220469317 1.0370994650621057 1.0263651959876443 1.0 19.927920488065574 RADSGEEENTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RADSGEEENTK 11 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 0 117.2 0.0014216 333590000.0 100570.0 138390.0 119820.0 120410.0 130040.0 95234.0 142670.0 103370.0 132010.0 118230.0 False True 100028.54229437732 142996.22749147826 136689.6145058898 135653.89365408444 146599.82319253313 88650.6977367223 135768.50704767313 111083.99430222408 99477.9043433731 110684.46017820452 0.9037270646062606 1.291926863637868 1.2349485581428177 1.2255911393133108 1.324484240664896 0.800931744112883 1.226626636016318 1.003609667729113 0.8987522203497347 1.0 16.756093159992876 2.755104377791142 24.998439006666768 1.00770692377518 1.2052500023771548 0.3319946288001584 0.14716341311367298 1007.5350704393878 1522433.5748823083 0.04347241634178858 0.0459898829038065 568.9896646744158 -2.755104377791142 0.19754307860197495 RAEATAASTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAEATAASTSR 11 1 O95721 O95721 SNAP29 Synaptosomal-associated protein 29 0 ; 120.57 0.00069539 72478000.0 21288.0 26721.0 21340.6 22027.0 22280.0 23092.0 23802.0 17631.4 29795.0 25122.0 False True 21173.38777331914 27610.392331814404 24345.170984179575 24815.6159415208 25117.22593609381 21495.704392721003 22650.606327530102 18947.14459843509 22452.421482545262 23518.692451973726 0.9002791212375515 1.173976503506567 1.0351413469899977 1.0551443704702312 1.0679686376011066 0.913983821023054 0.9630895243765657 0.8056206626761266 0.9546628295086625 1.0 14.521520233707982 2.733516741134229 22.899323856580157 0.9094864452870903 1.05343290389823 0.34956578593148524 0.07902586057306364 119.6112215960871 543035.1466425464 0.024139131618467476 0.02345288416151848 541.3981172334157 -2.733516741134229 0.14394645861113964 RAEDGIVLDLPLYPAHPQDFHEVEDLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAEDGIVLDLPLYPAHPQDFHEVEDLIK 28 1 P30039;P30039-2;A0A0C4DFS0 P30039 PBLD Phenazine biosynthesis-like domain-containing protein 0 123.14 1.7978e-05 22780000.0 43706.0 37983.0 34912.0 37968.0 33656.0 44171.0 44073.0 24510.0 47695.0 35500.0 False True 43470.69175219312 39247.24119379165 39827.30613945608 42774.744907053246 37941.892105259154 41117.56273734972 41941.0206147901 26339.06065925817 35941.206330256624 33234.35960692089 1.3080044949366367 1.1809236482359844 1.1983774205525008 1.2870639125583037 1.1416465535673492 1.2372003921142862 1.2619776975048465 0.7925249943366802 1.0814472357930451 1.0 15.020387934413291 1.7537719609480855 24.99999999999999 0.9441633982290929 1.226569269244419 0.6998387582613395 0.08167438653255044 2.4640033592474078 4054.749296905009 0.034636045792381415 0.0192075032899419 56.72466776968703 -1.7537719609480855 0.2824058710153261 RAEDGSVIDYELIDQDAR ddPTM_BT-474_Trastuzumab_2h_R1 5 RAEDGSVIDYELIDQDAR 18 1 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YL33;H0YNP5;H0YN28;H0YNA0 P07355-2 ANXA2 Annexin A2;Annexin 0 ;;;; 265.38 7.7728e-31 11005530000.0 1888852.0 2628720.0 2579840.0 2344741.0 2302355.0 3163260.0 2411784.0 2681620.0 3525470.0 2683020.0 False True 1878682.6307031864 2716215.3561052065 2943059.047628738 2641584.9701882913 2595546.262122767 2944591.281713089 2295116.7940104124 2881736.101390448 2656665.1573777124 2511787.3665510104 0.7479465243440754 1.0813874583002225 1.1716991202443685 1.0516753947271853 1.033346332053086 1.1723091376784696 0.9137384894016276 1.1472850527739624 1.0576791621599868 1.0 21.260282908471506 4.73922851692469 24.780701551663633 1.0751532643367843 0.7479464098733657 0.6147412361105739 0.0763605554607941 29.72574015786622 1102636.31674661 0.016842081879011466 0.10065315257544638 54856.55330228688 -4.73922851692469 -0.3272068544634186 RAEEQMLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAEEQMLK 8 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 102.07 0.0080756 549340000.0 829500.0 798490.0 775590.0 751360.0 669080.0 881470.0 953910.0 730490.0 1125100.0 852180.0 False True 825034.0641661132 825067.256952601 884786.3304508702 846482.0989613242 754283.3720521382 820536.0536571888 907765.7290099255 785002.8731530587 847834.1805676016 797793.1428119955 1.034145344065131 1.0341869498206917 1.1090422854880004 1.061029549561825 0.945462340517872 1.0285072779204782 1.1378459907668643 0.9839679373354167 1.0627243267336512 1.0 19.605655197669304 3.40431598353837 24.999996745471506 1.0282172705079469 1.0613872455633513 0.0894792203616055 0.05154112186059013 111.42219366737989 38257.682220539755 0.014447355511525138 0.01956181258488864 2536.9738079887215 -3.40431598353837 0.03316997505540442 RAEILAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAEILAK 7 1 P30038-2;P30038;P30038-3;Q5TF55 P30038-2 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 0 75.738 0.081719 0.0 249760.0 232310.0 209890.0 154290.0 187040.0 283880.0 205330.0 161400.0 306730.0 232390.0 False True 248415.3199109445 240042.29791563947 239440.6876034152 173823.09818029008 210858.43532706395 264256.0437816403 195397.40346322802 173444.48757259344 231140.50147142514 217558.67124091124 1.1418313896386345 1.1033451185672634 1.100579840084945 0.7989711335743954 0.9692026253165159 1.214642662939503 0.8981365916086922 0.7972308645906904 1.062428356236255 1.0 17.731044993990285 3.9571584657100884 22.089766875190065 0.951625365591334 1.1174319281236078 0.26279190517935636 0.11614657296572248 156.24511656930113 80562.58790617989 0.03189225037026423 0.05750760440519281 9060.631456187586 -3.9571584657100884 0.16580656253227377 RAELYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAELYEK 7 1 Q99614;H0YB37 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 ; 122.52 0.006948 855990000.0 704240.0 775550.0 699480.0 681490.0 618230.0 715920.0 793360.0 682800.0 1003310.0 725720.0 False True 700448.4500884201 801363.7129201249 797960.7040108495 767766.5641252552 696957.9259637025 666430.1354944069 754982.145870484 733754.0031881465 756057.6941652119 679403.9282798494 1.0309749781133182 1.179509978620612 1.1745011631463016 1.1300590593715392 1.0258373508794647 0.9809041540011548 1.1112419496631223 1.0799967039429748 1.1128250260186727 1.0 19.373910034269283 1.3671059023417476 0.012600441393957905 5.044352408914714e-08 2.1356872464217207 0.16803452485203396 0.06110693733879573 1129.1712388325589 13.56372505461238 1154.343561530662 1141.7396793265486 23.286590299698613 -1.3671059023417476 2.1356871959781967 RAEPPKPEVVDSTES(ph)IPVSDEDSDAMVDDPNDEDFVPFRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 RAEPPKPEVVDS(0.067)T(0.067)ES(0.784)IPVS(0.082)DEDS(0.001)DAMVDDPNDEDFVPFRPR 90.699 0.0012731 450910000.0 24607.0 26683.0 25351.0 20427.0 26965.0 24425.0 29243.0 25640.0 29651.0 32672.0 True False 24474.518646094715 27571.127524785887 28920.200445157887 23013.056105572505 30398.83291592324 22736.55724026549 27828.404370891643 27553.386997281887 22343.908353044117 30586.84498809352 0.8001648635425413 0.9014047553946295 0.9455110671406481 0.7523841087412171 0.9938531720991993 0.743344311880356 0.9098161115252114 0.9008247502482698 0.7305071301646798 1.0 14.900623681124324 -2.2737826569070902 2.3314681629823517 1.6056127556882143 0.860742064762538 0.19762002983548732 0.08759401119384753 6609739.053514508 1155717.9724173495 21121411.851617705 0.019193333574057104 0.005323746200037388 2.2737826569070902 -0.7448706909256763 RAEPPKPEVVDSTESIPVS(ph)DEDS(ph)DAMVDDPNDEDFVPFRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 2 RAEPPKPEVVDSTESIPVS(1)DEDS(1)DAMVDDPNDEDFVPFRPR;RAEPPKPEVVDSTESIPVS(1)DEDS(1)DAMVDDPNDEDFVPFRPR 178.71 9.5983e-28 168949000.0 82435.0 74283.0 69077.0 69163.0 68681.0 97821.0 95124.0 81727.0 112587.0 87907.0 True False 81991.17911938948 76755.46474997821 78802.44117195263 77919.02870855779 77427.1182458196 91058.86451586524 90522.48871103162 87825.88374129706 84841.44243850729 82296.69999903087 0.9962875682786189 0.9326675887475694 0.9575407175850381 0.9468062353590772 0.9408289548272456 1.1064704236857317 1.099952837867103 1.067185971519287 1.030921561125858 1.0 16.32854696098025 2.746413451917739 24.998534776695738 1.0684159210364366 0.9533004251299178 0.7164069562198898 0.03319654176533895 285.17813352069726 907829.9440591105 0.009966964570696481 0.010388459317208719 557.7164469206905 -2.746413451917739 -0.11511549590651882 RAEPPKPEVVDSTESIPVS(ph)DEDSDAMVDDPNDEDFVPFRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 RAEPPKPEVVDS(0.001)T(0.001)ES(0.001)IPVS(0.997)DEDSDAMVDDPNDEDFVPFRPR 108.85 4.8804e-06 257610000.0 48263.0 56470.0 54521.0 43562.0 43297.0 62004.0 64311.0 55618.0 62832.0 53830.0 True False 48003.15737052342 58349.56981316415 62197.08289497265 49076.944733487544 48810.616308575176 57717.80942171637 61200.03123812232 59768.49758248144 47347.895505664856 50394.52331381835 0.9525471065892748 1.1578553774545677 1.2342032190215797 0.9738547267899343 0.9685698583677473 1.1453190868042193 1.2144182981356044 1.1860117658081453 0.9395444661876959 1.0 15.620979335153315 RAETFGGFDSHQMNASK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAETFGGFDSHQMNASK 17 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 0 69.45100000000001 0.084472 438600000.0 378660.0 318960.0 290990.0 257600.0 267260.0 359960.0 337040.0 340200.0 341980.0 345140.0 False True 376621.3366330813 329576.3907846081 331958.86266957835 290212.13358767686 301293.97682587215 335076.8124546966 320736.0875821669 365587.45150059706 257703.61129722514 323112.86971077963 1.1656030196822473 1.020003910954132 1.0273774082930118 0.8981757175053026 0.9324728448469486 1.0370271315860182 0.9926441118524922 1.131454317582078 0.7975652951487116 1.0 18.30167868928691 4.859202337016909 1.847511260775058 0.9875923533849715 1.2634547458687395 0.3036189792724596 0.08476868810264088 1.6461371373979972 4.474234753749194 0.022018025098135788 0.8672918662016827 72310.66192066844 -4.859202337016909 0.275862392483768 RAFS(ph)TEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAFSTEK 7 1 Q9NZ32;H0YJD9 Q9NZ32 ACTR10 Actin-related protein 10 1 RAFS(0.727)T(0.273)EK 97.813 0.0071795 788570000.0 535720.0 501100.0 404270.0 477500.0 375070.0 523860.0 537150.0 480260.0 776180.0 598560.0 True False 532835.7430440873 517778.8105786538 461187.70202216785 537951.4510408214 422832.9412859387 487646.7912337962 511166.00238773145 516099.43991086556 584900.8392791409 560359.3883470021 0.9508821554964815 0.9240120204036266 0.8230212817217541 0.9600114894616442 0.7545745642510763 0.870239352413279 0.9122110078241293 0.9210150675503118 1.0437959128418164 1.0 19.09599287568471 1.4211485199676452 2.5311769976812584 1.0224653974191873 0.8813003691012185 0.44710093161641196 0.05922609881766058 0.24473502926448787 2.8168875677408853 0.04842237929853044 0.015484547746284313 26.37233112250228 -1.4211485199676452 -0.14116502831796884 RAFST(ph)EK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAFSTEK 7 1 Q9NZ32;H0YJD9 Q9NZ32 ACTR10 Actin-related protein 10 1 RAFS(0.297)T(0.703)EK;RAFS(0.473)T(0.527)EK 98.044 0.0067695 1304320000.0 872340.0 836990.0 737410.0 774430.0 652850.0 852830.0 860240.0 769790.0 1202610.0 1013910.0 True False 867643.4183660864 864848.7061788612 841230.9183173786 872472.7585959022 735986.5777548861 793875.8694458791 818626.9047640747 827235.6387144158 906242.8796483894 949201.3957479761 0.9140772677460914 0.9111329903780382 0.8862512445575197 0.9191650607597228 0.7753745212046643 0.8363618858991462 0.8624375274111266 0.8715069767281046 0.954742464252557 1.0 19.856354696373227 1.108509686769091 3.1247205090265875 0.9988151657086692 0.869994810400234 0.5305749929610035 0.0406516675892725 0.18509033189868934 3.3950561367679115 0.040971264084384805 0.01090431630970244 12.838364056235962 -1.108509686769091 -0.12882035530843527 RAGDLLEDS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 11 RAGDLLEDSPK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK 168.0 1.3598e-05 64852434000.0 55570434.6 42685053.3 35798328.9 32353671.5 34779319.0 50306711.3 48680873.1 47973977.0 74415565.0 45483542.0 True False 55271249.55456931 44105799.495430864 40838422.44446723 36449642.99460329 39208259.121475786 46829126.75709159 46325993.28915851 51554038.77065918 56076846.123233505 42580743.409140565 1.298033926357062 1.0358156284787392 0.9590819505443553 0.8560123679470296 0.9207979002325068 1.0997724090237242 1.087956423025108 1.2107359957363348 1.3169531960589445 1.0 25.3436978019613 2.1470475881448916 2.017735742074568 1.1924449595699917 1.0070912885441838 0.1916849834677481 0.13326137986862438 0.4664574661657417 3.733591254410943 0.07070921940374664 0.042384355449391356 140.29674273519888 -2.1470475881448916 -0.1853536710258079 RAGDLLEDS(ph)PKRPK ddPTM_BT-474_Trastuzumab_2h_R1 7 RAGDLLEDSPKRPK 14 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK 170.79 1.261e-05 14890280000.0 4739420.0 4180690.0 3624630.0 3850990.0 3768680.0 5173860.0 5758100.0 4870310.0 8997540.0 5381030.0 True False 4713903.4893190665 4319841.73936953 4134946.3981512585 4338524.939149104 4248599.059283582 4816203.236156393 5479558.704921907 5233757.26313307 6780216.827859041 5037608.058468441 0.9357424068342887 0.8575184272439946 0.8208154247332188 0.8612271714660003 0.8433762630940491 0.9560496132802836 1.0877302563685016 1.0389369721479016 1.3459198788721165 1.0 22.264307449613817 2.2501115465783275 1.4787831590691691 1.1395405955810483 0.8583423585555762 0.6431513388612271 0.08955463069901919 0.24555639450638836 1.0579988072030821 0.04906096768815334 0.029502030710107544 177.8736211743779 -2.2501115465783275 -0.2811982370254721 RAGDLLEDSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAGDLLEDSPK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 101.89 0.0047262 206540000.0 304070.0 345310.0 297640.0 295530.0 323900.0 373600.0 339860.0 340920.0 539980.0 402970.0 False True 302432.9209053526 356803.434605697 339545.1248667424 332944.06769862626 365146.7450942909 347773.9113598025 323419.6734087213 366361.1815566828 406909.164361295 377252.1096000258 0.8016732397494112 0.9457957305632854 0.9000483131207364 0.8825505788466597 0.9679117380720034 0.9218607464608297 0.8573038166747978 0.9711309022104876 1.0786133569742327 1.0 18.525169442785817 1.4961861082344707 4.4401573282842595 1.0373956989497723 0.9022402233915763 0.5949001101262446 0.04731343203063599 0.11718998542177414 4.949684958304601 0.028629664075861025 0.011618026015107596 31.346287191285978 -1.4961861082344707 -0.13515547555819607 RAGELTEDEVER ddPTM_BT-474_Trastuzumab_2h_R1 4 RAGELTEDEVER 12 1 P62269 P62269 RPS18 40S ribosomal protein S18 0 ;;; 220.34 4.7771e-11 5641280000.0 2248150.0 3024830.0 2590010.0 3048240.0 2809090.0 2741420.0 2763830.0 2461380.0 3428560.0 3042320.0 False True 2236046.2101929463 3125509.638001655 2954660.8952295124 3434146.8714569095 3166810.9607191086 2551912.088008543 2630132.984044094 2645060.6742343856 2583637.3283502413 2848156.5329388026 0.7850854348534472 1.0973798672422939 1.0373941393525923 1.2057437264213378 1.1118809391601485 0.8959873021358883 0.9234509949248659 0.9286921711094097 0.9071261703739213 1.0 21.44159700744334 2.7323978312318573 24.883075732900064 0.9262598215204119 1.0584983367910001 0.2350521610024069 0.10391180440899848 631.0875435124785 2548093.773171436 0.03332022437187356 0.032148570646319506 540.0050623970534 -2.7323978312318573 0.13223851527058827 RAHT(ph)PTPGIYMGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RAHTPTPGIYMGR 13 1 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 RAHT(0.996)PT(0.004)PGIYMGR;RAHT(0.998)PT(0.002)PGIYMGR;RAHT(1)PTPGIYMGR;RAHT(0.999)PT(0.001)PGIYMGR 152.37 2.6482e-05 3041850000.0 342743.0 414927.0 355240.0 415780.0 403139.0 432585.0 422713.0 345967.0 520590.0 459085.0 True False 340897.70977032685 428737.59436633147 405254.7041985678 468417.70536911633 454476.3620579416 402681.41714555817 402264.757269525 371784.8143248292 392297.5700486068 429785.80225755705 0.7931804819509548 0.9975610923261783 0.9429225024881381 1.089886410646037 1.0574485235917317 0.9369351314779912 0.935965672101147 0.8650467567144768 0.9127746146754174 1.0 18.713258299336214 -0.5188381608401346 7.691411517326352 0.9999905747177578 0.949624517177333 0.034758810011974894 0.08183879339340498 0.0 0.0 0.08294346544696125 0.01954996229088614 0.3028041612854214 0.5188381608401346 -0.05036605754042478 RAHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 34 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 RAHT(0.998)PT(0.002)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.995)PT(0.005)PGIYMGRPTHSGGGGGGGGGGGGGGGGR 214.5 4.5949e-36 444110000.0 32559.0 31681.0 33161.0 41699.0 48007.0 40146.0 55589.0 35766.0 64624.0 48432.0 True False 32383.70596164496 32735.482933431067 37829.78055942091 46978.0891245052 54120.406890217935 37370.801513518876 52899.94769939796 38435.04053606801 48698.28111723458 45341.028295278695 0.7142252211562002 0.7219836903619535 0.8343388313352408 1.0361055073247416 1.1936298960350977 0.8242160118236721 1.1667125711153394 0.8476878884564293 1.0740444790994181 1.0 15.468529490074037 3.9453612299216503 3.0710743198280253 1.0115954706933035 0.7212674783998716 0.5517994469125551 0.11164659292586375 0.18472842947439158 3.443092023225193 0.028322536595949643 0.06144588200445487 8817.820013903258 -3.9453612299216503 -0.29032799229343187 RALPNNTSSS(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RALPNNTSSSPQPK 14 1 P04637-7;P04637;P04637-4;A0A087WZU8;A0A0U1RQC9;A0A087X1Q1;A0A087WT22;J3KP33;A0A087WXZ1;E7ESS1;P04637-5;P04637-9;P04637-8;P04637-6;P04637-2;P04637-3 P04637-7 TP53 Cellular tumor antigen p53 1 RALPNNTSS(0.005)S(0.995)PQPK;RALPNNTSS(0.038)S(0.961)PQPK;RALPNNTSS(0.075)S(0.925)PQPK;RALPNNTS(0.001)S(0.025)S(0.975)PQPK 157.54 3.2273e-06 1168770000.0 1345700.0 1289720.0 1169290.0 1241680.0 1294180.0 1494080.0 1542910.0 1500620.0 2546750.0 1727290.0 True False 1338454.9007213253 1332647.550547795 1333915.8683491235 1398876.5606876821 1458986.1517941623 1390797.7662860136 1468273.5488114203 1612603.8843939626 1919137.587201614 1617052.8733926304 0.8277125149984754 0.8241211975659499 0.8249055366696353 0.8650778114340769 0.902250121687834 0.8600818125186432 0.9079935313005157 0.9972487053009382 1.1868118963699683 1.0 20.62493542125526 1.658718688751324 2.2615826976745756 1.0937602403530275 0.8534718590090999 0.7869942332662725 0.05000113427690171 0.11042651885413274 1.2377245082357626 0.03384007980297741 0.01341118297749061 45.57416168405599 -1.658718688751324 -0.2402883813439276 RALS(ph)SDSILSPAPDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RALSSDSILSPAPDAR 16 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 RALS(0.846)S(0.059)DS(0.088)ILS(0.006)PAPDAR;RALS(0.95)S(0.024)DS(0.024)ILS(0.002)PAPDAR 167.99 6.4961e-09 549770000.0 190983.0 227944.0 204250.0 238900.0 208218.0 187501.0 205811.0 176478.0 264640.0 230474.0 True False 189954.76874820612 235530.9782449423 233006.6246271742 269144.7155050314 234733.32809522355 174539.49719987783 195855.13565562962 189647.68449712603 199423.01799432054 215764.95200128158 0.8803782402393038 1.0916090683881936 1.0799095148028963 1.2473977493037551 1.0879122207661849 0.8089334972198874 0.9077245115066988 0.8789550051483782 0.9242604794922209 1.0 17.71910101266221 2.7559368067185077 24.193231787246226 0.8954774911142632 1.087807622423057 0.45721567996098 0.09393565109876176 451.48877030616984 628616.1955223763 0.028871546275310234 0.030549655378418906 570.0813149059284 -2.7559368067185077 0.19233013130879384 RALSS(ph)DSILSPAPDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RALSSDSILSPAPDAR 16 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 RALS(0.437)S(0.554)DS(0.009)ILSPAPDAR 53.059 0.09468 277250000.0 46058.0 55634.0 62623.0 68522.0 51053.0 60725.0 55270.0 45998.0 67102.0 60201.0 True False 45810.02884552487 57485.74405853681 71439.77407112632 77196.87817428114 57554.29693516147 56527.22368127418 52596.3789480963 49430.60433311122 50565.611220733444 56358.92063933082 0.8128265823024959 1.0199937011997995 1.2675859164923595 1.3697366326140794 1.0212100636823842 1.002986271561523 0.9332396424815705 0.8770679738429097 0.8972068777599258 1.0 15.782356361615808 2.6483621529163632 2.256846697610693 0.9160682854971535 1.1223854715928971 0.24130086586497324 0.14319454446888003 0.42801698273525995 4.299337294480709 0.056908279317012644 0.05323539108258304 445.002194740337 -2.6483621529163632 0.20631718609574368 RAPAPPPPQPPPPS(ph)PLIPNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPAPPPPQPPPPSPLIPNR 20 1 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 RAPAPPPPQPPPPS(1)PLIPNR;RAPAPPPPQPPPPS(1)PLIPNR 126.32 1.4407e-05 1219830000.0 175597.0 181311.0 173194.0 173769.0 182551.0 193450.0 150366.0 143513.0 173454.0 168429.0 True False 174651.60526266063 187345.82703018578 197578.20977076553 195768.13758306322 205797.78778545154 180077.2568323175 143092.22212609832 154222.66880424775 130708.58586452124 157679.7170206782 1.1076352023117644 1.1881415731207658 1.2530350352217783 1.2415556121107834 1.3051633505815026 1.1420445205942504 0.9074865482371023 0.9780755046891854 0.8289499013204092 1.0 17.266637566805844 2.3456771968240138 4.042659876201855 0.9312473445994963 1.220869340990897 0.82051961869968 0.06429321826841178 0.0886103540961844 2.6665077563044046 0.02347590189915505 0.0191392567829464 221.65482874039785 -2.3456771968240138 0.28962199639140074 RAPEEELPPLDPEEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPEEELPPLDPEEIR 16 1 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EKR9;Q8IY67-3 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 0 ; 99.569 0.0037674 166055000.0 159037.0 183062.0 184712.0 180358.0 170888.0 173632.0 193598.0 167805.0 196268.0 185735.0 False True 158180.76246267176 189155.10800668434 210717.84405451454 203191.3043074777 192649.57386746883 161629.2285257635 184232.92512382023 180327.4611965245 147900.3812564591 173881.23328426637 0.909705777184551 1.0878408465015186 1.2118492609839415 1.168563740143793 1.1079377010888771 0.9295380845472098 1.0595331171974758 1.0370725913918475 0.8505827711416506 1.0 17.40774270777866 2.75935611561486 23.117494675945274 0.9895644979980314 1.106997025708203 0.2971153380229389 0.09179147794127489 427.95445513887347 475737.64208952023 0.029092974146619 0.030814472804794657 574.5874230236697 -2.75935611561486 0.11743252771017154 RAPEEELPPLDPEEIRK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAPEEELPPLDPEEIRK 17 2 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EKR9;Q8IY67-3 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 0 100.77 0.00070387 226760000.0 235340.0 252660.0 212900.0 240020.0 222290.0 291970.0 276420.0 262910.0 385340.0 278800.0 False True 234072.9555887322 261069.63536380453 242874.46944002667 270406.5073901952 250597.3138839448 271786.8011234524 263048.50857305597 282529.6792299289 290378.1202914582 261006.74530731127 0.89680807027854 1.0002409518436743 0.9305294740718846 1.0360134833749854 0.9601181516933199 1.0413018284391409 1.0078226455923225 1.0824612172274566 1.112531095506995 1.0 17.99372756588967 3.1883786548074746 0.5872136227924173 1.0674688557464982 0.9297516151184305 0.49366779843389763 0.04451291564698183 0.7851663778750725 0.5677740835252715 0.030694205462755246 0.05746039349732569 1543.045224475875 -3.1883786548074746 -0.13771724062806767 RAPFDLFENK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPFDLFENK 10 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ; 173.64 5.3703e-06 10523100000.0 8300600.0 9099500.0 10088700.0 7061100.0 4337600.0 7024700.0 9208500.0 6848600.0 16848400.0 7891400.0 False True 8255910.4918833645 9402371.356736084 11509101.267447617 7955034.5360091105 4889967.649030549 6539099.023365118 8763049.675113896 7359677.308486139 12696337.576993298 7387764.095832561 1.1175113856898227 1.2726951259908208 1.557859877244849 1.0767851318501827 0.661900892556786 0.8851255858391343 1.1861572136632157 0.996198201921165 1.7185629389757184 1.0 22.81670636861607 3.517784939989916 23.872049529160662 1.051557407256161 1.312628499378322 0.13704368996659966 0.2735090193707703 564.6340852642012 331472.2805590629 0.07372992738003994 0.11420015199167484 3294.4653184073436 -3.517784939989916 0.26107109212216084 RAPFDLFENKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPFDLFENKK 11 2 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ; 168.98 9.7993e-06 9344000000.0 8193300.0 7784900.0 7051000.0 6441200.0 6600600.0 9100300.0 9730600.0 9094900.0 14171900.0 9630400.0 False True 8149188.183161202 8044015.690428571 8043719.511609338 7256655.259568887 7441147.285178683 8471217.680801976 9259893.703498213 9773607.620966423 10679425.138730764 9015779.62699975 0.9038805871825717 0.8922152074723502 0.8921823563123301 0.8048838325459092 0.8253470684769754 0.9395990176415845 1.0270763135965977 1.0840557362002492 1.1845259734109803 1.0 23.104020821422576 2.2256093495826175 1.990082922279689 1.0960021603367969 0.8641543815459268 0.7908877249736881 0.051460491186534785 0.14096272963352469 1.123329545151874 0.025417294490064444 0.016403880144352595 168.1161166477281 -2.2256093495826175 -0.23184777879087004 RAPFDLFENR ddPTM_BT-474_Trastuzumab_2h_R1 6 RAPFDLFENR 10 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;;; 240.37 4.5452e-12 9024030000.0 3696930.0 4856700.0 6354230.0 3646550.0 1641932.0 2493020.0 4142060.0 2207250.0 7677370.0 3207010.0 False True 3677026.1396475337 5018352.323562847 7248850.352042735 4108202.856110803 1851022.3077065693 2320683.395337836 3941692.733594204 2371966.203188395 5785385.034987365 3002335.8761406066 1.2247217804205894 1.6714826490411714 2.414403534810658 1.36833553126366 0.6165273920271676 0.7729592860612884 1.3128753398041215 0.7900402556683536 1.9269612973563326 1.0 21.5176539519246 3.481145737739532 24.978900494982852 1.0400135602225908 1.782170499668533 0.34018731396278235 0.4357287668663371 170.33136421647677 1057203.83405972 0.11794480693145121 0.1634491046239896 3027.9293506242493 -3.481145737739532 0.7421569394459422 RAPFDLFENRK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAPFDLFENRK 11 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 95.094 0.0045078 578460000.0 208490.0 305250.0 238990.0 282020.0 376140.0 263880.0 263420.0 340500.0 521090.0 392920.0 False True 207367.51300541672 315410.061722478 272637.71466168115 317723.7030838379 424039.1994435514 245638.59670670424 250677.36823787825 365909.8390239656 392674.3517482631 367843.5092042638 0.5637384045568828 0.8574571898924838 0.7411785388070697 0.8637469335021097 1.1527706452150066 0.6677801580299217 0.6814782970621263 0.9947432260406573 1.0675038213878356 1.0 18.488732608892406 5.327897901530523 0.8729254519938123 0.9043517286331982 1.5543198692922628e-19 0.3047500071652073 0.15312455209785036 7.899521082047755 2.2673362586124597 0.05125557520489805 8.714986928712284 212763.8799697551 -5.327897901530523 -0.9043517286331982 RAPS(ph)PDGFSPYSPEETNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPSPDGFSPYSPEETNR 18 1 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 RAPS(1)PDGFSPYSPEETNR;RAPS(1)PDGFSPYSPEETNR 166.01 1.6383999999999998e-11 685330000.0 166566.0 202089.0 182761.0 189120.0 181365.0 194736.0 189181.0 182640.0 195669.0 203106.0 True False 165669.22716322233 208815.41019961966 208492.1602129108 213062.57260908931 204460.75771542455 181274.3586792359 180029.59228839914 196269.52422712801 147448.99678027027 190143.60119220504 0.8712847875209695 1.0981984610070594 1.096498430163623 1.1205350654620074 1.0752965465755913 0.9533550303173036 0.9468085760425762 1.0322173504473109 0.7754612611508431 1.0 17.536729863925412 2.732858007298494 22.556918147450798 0.9513490275262283 1.0611484376122549 0.26607469284166585 0.09070017830536753 170.69624133256406 675192.0755453296 0.02852858640961599 0.027647651302141443 540.5775520686898 -2.732858007298494 0.10979941008602656 RAPS(ph)PGAYK ddPTM_BT-474_Trastuzumab_2h_R1 4 RAPSPGAYK 9 1 P54259 P54259 ATN1 Atrophin-1 1 RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK 111.94 0.0012519 5241040000.0 3361460.0 3262520.0 2912270.0 2791000.0 2698120.0 3211720.0 3424460.0 3199410.0 4540240.0 3443020.0 True False 3343362.272853316 3371111.0059650163 3322292.3020953806 3144340.313832322 3041709.588989832 2989701.3559756633 3258805.7870924147 3438166.2204747926 3421358.6880990583 3223283.515882279 1.037253551038674 1.0458623913640666 1.0307167476038797 0.9755084522782513 0.9436680248579541 0.9275328531431777 1.0110205233374927 1.0666657784007239 1.0614513651190756 1.0 21.620099660907517 -0.3073181936757212 6.890544141990134 0.9999999945747703 1.0112645442803034 0.005290278993729247 0.04549470808623533 0.0 0.0 0.05022606385901046 0.011838396782338294 0.4928126036193619 0.3073181936757212 0.011264549705533144 RAPS(ph)PLPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RAPSPLPK 8 1 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK 75.416 0.023549 3582840000.0 4465410.0 4275380.0 3936920.0 3726250.0 3822700.0 4657220.0 4715470.0 4138870.0 5948680.0 4766510.0 True False 4441368.728713694 4417683.438778216 4491204.115677917 4197992.867938984 4309498.186081951 4335277.343316651 4487364.701255283 4447733.496156013 4482707.522228142 4462307.250985475 0.9953076914936422 0.989999834234318 1.006475767594457 0.9407673277118874 0.9657555931699284 0.9715326846575232 1.005615357450851 0.9967340315200742 1.004571686819226 1.0 22.08935842271172 2.235875342929037 24.998120276289917 1.0011004299697783 0.9778416000783577 0.3128544105518649 0.016987905464138198 95.98698483092257 893560.801078456 0.006680461593549553 0.00515456771293489 172.13744119234983 -2.235875342929037 -0.023258829891420585 RAPS(ph)PVVSPTEMNK ddPTM_BT-474_Trastuzumab_2h_R1 9 RAPSPVVSPTEMNK 14 1 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK;RAPS(1)PVVSPTEMNK 228.08 1.0968e-12 6737430000.0 4825240.0 4464700.0 4293840.0 3912790.0 3834840.0 5284810.0 5425340.0 4489030.0 6051470.0 5194170.0 True False 4799261.443974565 4613304.84053186 4898375.349273661 4408148.812812608 4323184.143122535 4919483.523804608 5162895.57738854 4824024.213432457 4560166.304043574 4862673.623647335 0.9869594004079577 0.9487177626105139 1.0073419950400757 0.9065277980770993 0.8890549680527097 1.011682852799539 1.0617400995783917 0.992051818977337 0.9377899190822394 1.0 22.213318332328523 2.677055658936426 24.9998633732797 1.0045852554194767 0.9487993571086492 0.275559155119974 0.042657357399231766 317.6214817947299 129102.69680734532 0.01449380322681784 0.01366489031764645 475.3961485417137 -2.677055658936426 -0.055785898310827586 RAPS(ph)SPVAKPGPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPSSPVAKPGPVK 14 2 Q9GZR2;A0A0C4DG31;Q9GZR2-2 Q9GZR2 REXO4 RNA exonuclease 4 1 RAPS(0.574)S(0.426)PVAKPGPVK;RAPS(0.5)S(0.5)PVAKPGPVK 89.98200000000001 0.0030958 1375390000.0 1509890.0 1365430.0 1389700.0 1137650.0 1054860.0 1510820.0 1480330.0 1392980.0 2632500.0 1782040.0 True False 1501760.9200045494 1410877.5121301361 1585357.6805110606 1281676.3733541179 1189190.1683549355 1406380.569487735 1408720.7824902358 1496931.2410091157 1983755.6486927466 1668308.6815187996 0.9001696967957824 0.8456933226803672 0.9502783855729733 0.7682489383123642 0.7128118324435723 0.8429978127353447 0.8444005585391791 0.8972747415342436 1.1890818951363182 1.0 20.669954819794153 1.393452433853901 4.679625616506435 1.091545269691659 0.8380005759799161 0.6449831773912791 0.07478846972301653 0.12753493556880932 4.351744190973985 0.05416163958691533 0.019220629540130773 24.743004484912987 -1.393452433853901 -0.25354469371174293 RAPS(ph)VANVGSHCDLSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAPSVANVGSHCDLSLK 17 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 RAPS(1)VANVGSHCDLSLK 241.36 1.0978e-20 472380000.0 689410.0 563000.0 496730.0 394940.0 534060.0 687340.0 562910.0 558560.0 839280.0 570990.0 True False 685698.2931606516 581739.1146593131 566665.2663454411 444939.36350588914 602069.3753783776 639825.8036243235 535679.8927749756 600242.5835102091 632450.6897758207 534548.9293508662 1.2827605772091524 1.088280385044925 1.0600811922560123 0.8323641468072994 1.1263129384797486 1.1969452532648435 1.0021157341489446 1.1228954929142192 1.183148361261975 1.0 19.027962483937404 RAPS(ph)WR ddPTM_BT-474_Trastuzumab_2h_R1 2 RAPSWR 6 1 Q13136-2;A0A2R8Y7R9;Q13136;O75335;B1APN9;M0QZB5;O75335-1;O75335-2 Q13136-2 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 1 RAPS(1)WR;RAPS(1)WR 68.95 0.05805900000000001 870930000.0 640060.0 645250.0 530650.0 721770.0 500600.0 524290.0 477150.0 492790.0 623670.0 569060.0 True False 636613.9880773516 666726.7561881387 605360.9075075157 813146.0079952554 564348.4427113364 488047.06634590763 454068.4316099899 529564.4921369166 469974.8852498403 532742.1036032231 1.1949759250706613 1.251500025394473 1.1363113660683704 1.5263407988509055 1.0593276538391514 0.9161038015298233 0.8523231570001308 0.9940353663718062 0.8821808564991314 1.0 19.023077778724662 3.0088756005598345 24.997102745093205 0.9336466908607692 1.2688040728606482 0.7155604875867397 0.10356112400318992 103.46581551255736 291396.9196429019 0.028948081064711768 0.03455347656951486 1020.6470873783011 -3.0088756005598345 0.335157381999879 RAQS(ph)TDSLGTSGSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RAQSTDSLGTSGSLQSK 17 1 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 RAQS(0.5)T(0.5)DS(0.001)LGTSGSLQSK;RAQS(0.935)T(0.064)DSLGTSGSLQSK 326.41 6.7631e-61 327790000.0 275610.0 362210.0 317020.0 380150.0 331640.0 400760.0 443210.0 316230.0 525640.0 459580.0 True False 274126.14638315 374265.94088943175 361653.660412763 428276.9510223425 373872.3882157159 373056.40448756615 421770.2390733807 339828.6883834033 396103.06521514035 430249.21093376697 0.6371334087707352 0.8698817601016976 0.8405678644427227 0.9954160057443358 0.8689670514544423 0.8670705140351666 0.9802928822530914 0.7898415145163785 0.9206363548127852 1.0 18.714813020838292 5.016256716855818 1.7036507169843018 0.8999286604787945 0.3543939430184408 0.5970468489725358 0.06609050367900651 1.5195676816723251 2.381687091304085 0.016494651833221883 1.6935767513484663 103814.18930346143 -5.016256716855818 -0.5455347174603538 RAQST(ph)DSLGTSGSLQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAQSTDSLGTSGSLQSK 17 1 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 RAQS(0.351)T(0.59)DS(0.059)LGTSGSLQSK 116.45 0.0010482999999999998 0.0 54491.0 65085.0 60799.0 55738.0 58223.0 71287.0 77045.0 70011.0 95203.0 79388.0 True False 54197.626510519236 67251.31488028663 69358.97072561849 62794.42508505411 65637.35393524203 66359.09748154791 73318.03900951834 75235.57632865457 71741.49630484173 74321.38987251376 0.7292332207926472 0.9048715988175856 0.9332302698401163 0.844903804850363 0.8831556305369455 0.8928667452987107 0.9864998371973869 1.0123004488708964 0.9652873342102803 1.0 16.181489861133226 2.299642436264574 2.893903006357319 0.9964314526790405 0.8659800904065057 0.5930834027520863 0.05170317951888974 0.18792522697467046 3.22151576183982 0.020440821941485547 0.015589196713882925 199.36202498161967 -2.299642436264574 -0.13045136227253484 RAS(ph)AAAAAGGGATGHPGGGQGAENPAGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASAAAAAGGGATGHPGGGQGAENPAGLK 29 1 Q07617 Q07617 SPAG1 Sperm-associated antigen 1 1 RAS(0.991)AAAAAGGGAT(0.009)GHPGGGQGAENPAGLK 60.87600000000001 0.0010779 0.0 17779.0 15545.0 17510.0 15174.0 18473.0 19183.0 16659.0 15048.0 28777.0 21652.0 True False 17683.2798394326 16062.405927849066 19975.255800351624 17095.026844174732 20825.42705195069 17856.924361924794 15853.140526439953 16170.958172195711 21685.293942044143 20270.150822790176 0.8723802794575607 0.7924166952813074 0.9854517598306671 0.8433596273469469 1.027393788729791 0.8809467930474332 0.7820928746428427 0.7977719708930013 1.0698141386132605 1.0 14.307069202961165 1.2305181023475458 24.999824253163663 1.034907147825044 0.8701502262159707 0.41060816084564833 0.07767336143612223 196.8301717568592 611814.2817867654 0.07257960519332195 0.019416377294587835 17.002708231863856 -1.2305181023475458 -0.1647569216090733 RAS(ph)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 RASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK 35 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 RAS(1)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK;RAS(1)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK;RAS(1)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK 216.11 9.137799999999998e-37 2078390000.0 670330.0 776420.0 845770.0 862540.0 912220.0 1105280.0 1089660.0 1087800.0 1161970.0 1267130.0 True False 666721.0177606639 802262.6703441988 964847.0644353732 971737.4755617816 1028385.8098484516 1028874.5951492583 1036948.9828945657 1168977.1597364752 875618.0631002889 1186260.6785554276 0.5620358406995041 0.6762954254887353 0.8133516366826881 0.8191601501493901 0.8669138482283434 0.8673258869224033 0.8741324749609953 0.9854302522781085 0.7381329238414741 1.0 20.17798964357129 5.372721963703647 0.5615045328675313 0.9065513713111734 1.385081852408463e-14 0.7151090479568956 0.06774254291550874 3.6723891435267877 0.5217616051815193 0.031445641200360516 2.5306574364590295 235896.75333770647 -5.372721963703647 -0.9065513713111595 RAS(ph)AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASAILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK 37 2 Q9BZQ8 Q9BZQ8 FAM129A Protein Niban 1 RAS(1)AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK 238.59 4.6974e-50 202290000.0 179900.0 93394.0 97029.0 91752.0 99044.0 133690.0 123660.0 151310.0 242750.0 141640.0 True False 178931.43838876914 96502.56283213469 110689.83980881314 103367.79379245552 111656.66632021898 124448.32497240906 117678.09337292536 162601.52053661156 182927.51518334824 132600.41393589525 1.3494033169102495 0.7277696951895504 0.8347624002314605 0.7795435227104793 0.8420536784613555 0.9385213912874566 0.8874639971321358 1.2262519830082894 1.3795395485852953 1.0 17.016725753524803 1.7242510007000966 5.2194622414382295 1.2284132176281697 0.8916630881596207 0.3465734815324595 0.1823012854831339 0.15154210909776084 10.073422883271247 0.08984472972448038 0.04548515990599614 52.99696516061175 -1.7242510007000966 -0.336750129468549 RAS(ph)CTSSTSGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 RASCTSSTSGSK 12 1 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 1 RAS(0.985)CT(0.015)SSTSGSK;RAS(0.998)CT(0.002)SSTSGSK;RAS(0.997)CT(0.001)S(0.001)S(0.001)TSGSK;RAS(0.922)CT(0.039)S(0.032)S(0.005)T(0.001)SGSK;RAS(0.996)CT(0.003)S(0.001)STSGSK 137.91 5.1349e-05 935605000.0 2325310.0 1393770.0 1393875.0 1221201.0 1113716.0 1092792.0 1592460.0 1574807.0 2125730.0 2244220.0 True False 2312790.7893262296 1440160.7918982415 1590120.4842213085 1375804.9213874394 1255541.1310880913 1017249.8611956694 1515426.626012041 1692327.0950479128 1601872.3248226515 2100991.9582265927 1.1008089680069086 0.6854670653351066 0.7568427275483238 0.6548358816892997 0.5975944487421406 0.48417598992349814 0.7212910168828937 0.8054895633567174 0.7624361999818225 1.0 21.002639209274772 -0.36070818221244716 8.758224923988799 1.000011924960039 0.7217056147598322 0.21958783890661282 0.15206629135261046 0.0 0.0 0.14751286026423627 0.03476911460168837 0.4358046078198019 0.36070818221244716 -0.2783063102002068 RAS(ph)DDGKLTDPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASDDGKLTDPSK 13 2 P04049;P04049-2;A0A0B4J1W9 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 RAS(0.995)DDGKLT(0.004)DPSK 82.48200000000001 0.0096307 390630000.0 619700.0 491830.0 435610.0 465400.0 427930.0 710190.0 668790.0 584240.0 960580.0 677910.0 True False 616363.6040551432 508200.2642324872 496940.10161000484 524319.5922814626 482424.34896017145 661096.2369074366 636438.0726740975 627838.9555106071 723857.9301125476 634645.2034120488 0.9711939848302358 0.8007627907691502 0.7830203378806005 0.8261617506325715 0.7601481053768453 1.0416784580631493 1.0028249945834455 0.9892755072206499 1.1405710249141783 1.0 19.27559075714184 2.7298123946129906 24.918895469290504 1.0278042443326985 0.8241003209514207 0.7085820275770209 0.06614623000221785 337.4974317887737 961343.4957829812 0.020994852337743876 0.02007664980064839 536.7998608876429 -2.7298123946129906 -0.20370392338127774 RAS(ph)DTSLTQGIVAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 RASDTSLTQGIVAFR 15 1 Q9H0K1 Q9H0K1 SIK2 Serine/threonine-protein kinase SIK2 1 RAS(0.939)DT(0.061)SLTQGIVAFR;RAS(0.972)DT(0.025)S(0.001)LT(0.002)QGIVAFR 195.46 5.7700000000000005e-09 435010000.0 241573.0 249960.0 218527.0 234904.0 227078.0 234813.0 229020.0 204091.0 268861.0 257320.0 True False 240272.39780928317 258279.76749598898 249293.70212926593 264642.82231475017 255995.03730324545 218580.93000034645 217941.42765864 219321.306773099 202603.80910282256 240897.61729726437 0.9974046256870623 1.0721557580923486 1.0348533328233003 1.0985696964706153 1.0626715206873594 0.9073602821509876 0.9047056176969291 0.9104336906016779 0.8410369989372383 1.0 17.878060598480523 2.7367773833482816 24.433192409741245 0.9068751267472287 1.0556968709832837 0.7208198578265812 0.043605694732109686 55.43776105566171 759581.0441927606 0.012982687226372094 0.012835764227972881 545.4781806916117 -2.7367773833482816 0.148821744236055 RAS(ph)FAEK ddPTM_BT-474_Trastuzumab_2h_R1 7 RASFAEK 7 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK 155.26 0.00099404 8072180000.0 7058560.0 5782150.0 5198850.0 5499680.0 5521720.0 6668040.0 6845140.0 6512529.0 9630730.0 7072370.0 True False 7020557.497239742 5974605.367366507 5930802.890785733 6195938.924105102 6224878.312201443 6207094.08967778 6514014.427225844 6998526.983932185 7257365.636670348 6621005.29163942 1.0603461540960935 0.9023713324788992 0.895755648809822 0.9358003280753959 0.9401711731089868 0.9374851425531556 0.98384069190389 1.057018787278342 1.0961123450293089 1.0 22.658618852693955 1.9044556396678698 2.7192166771942445 1.0579379309549928 0.9406514147072086 0.4912816116336386 0.047711281089310685 0.20752786883185997 2.755715469790517 0.025253968882223313 0.01318068805571423 80.25195845754067 -1.9044556396678698 -0.11728651624778419 RAS(ph)GQAFELILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR 177.38 7.3613e-06 772822000.0 496690.0 525020.0 456084.0 483596.0 516520.0 582957.0 528148.0 445861.0 636960.0 563753.0 True False 494015.8762274469 542494.9733187085 520296.66284680675 544819.2040157851 582295.7603461032 542658.5547231714 502599.4635187108 479133.411856283 479989.7428267172 527773.8008867741 0.9360371344644115 1.0278929579437244 0.9858326843291498 1.0322967966586654 1.1033055437153578 1.0282029039929372 0.9523008960926728 0.9078385684382879 0.9094611025030622 1.0 19.009560210343782 2.1456093118953294 4.369275578169331 0.9293777299591827 1.0222530512836252 0.39084105781249 0.04629393997155685 0.19721564427386704 6.7957491805471095 0.01846378385305257 0.013385526920174948 139.83288303160617 -2.1456093118953294 0.09287532132444254 RAS(ph)GQAFELILSPR ddPTM_BT-474_Trastuzumab_2h_R1 6 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR 205.78 7.206e-09 3526470000.0 925691.0 1095036.0 1087663.0 1100621.0 1108725.0 1507815.0 1579458.0 1175264.0 1744713.0 1371258.0 True False 920707.1825099383 1131483.6112967583 1240796.496263728 1239959.505750787 1249914.5568220643 1403583.298064724 1503053.5824245047 1262968.1675496679 1314751.8591064264 1283743.1404469633 0.7172051429146284 0.8813940855043693 0.9665457654026627 0.9658937732037797 0.9736484795446535 1.0933521308445207 1.1708367001682156 0.9838168771908202 1.0241549245191424 1.0 20.291925136991626 5.544874679701088 0.6320688774121006 1.0498282447519063 9.346886811965036e-17 0.766021574176921 0.05531754039029355 4.071186821679143 0.5807343357708308 0.024672841585126 3.891967652618517 350650.67536475416 -5.544874679701088 -1.0498282447519063 RAS(ph)ISEPSDTDPEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RASISEPSDTDPEPR 15 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 RAS(0.97)IS(0.029)EPS(0.001)DTDPEPR;RAS(0.954)IS(0.045)EPS(0.001)DTDPEPR;RAS(0.945)IS(0.023)EPS(0.023)DT(0.009)DPEPR;RAS(0.47)IS(0.47)EPS(0.06)DTDPEPR 204.42 4.8263e-09 2020580000.0 1319020.0 1512040.0 1307240.0 1471670.0 1527390.0 1391590.0 1429080.0 1299510.0 1492790.0 1511160.0 True False 1311918.542876899 1562367.3373525203 1491288.0292662298 1657983.2711062767 1721894.0629501948 1295392.658750504 1359949.9407842485 1396486.0349780745 1124911.906861177 1414716.4750308346 0.9273367250835931 1.1043678114503244 1.0541250176885983 1.1719544519124512 1.2171301411561388 0.915655314413632 0.961287978748256 0.9871137147446009 0.7951500719157588 1.0 20.43208151916413 2.713781035431578 24.814472196890858 0.9381854002387702 1.0975105493918873 0.4580335632017144 0.08857464345509164 672.2489665236462 673194.6025909329 0.02892346810041112 0.027280762623533104 517.3459283596394 -2.713781035431578 0.15932514915311713 RAS(ph)LSDLTDLEDIEGLTVR ddPTM_BT-474_Trastuzumab_2h_R1 6 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 RAS(0.996)LS(0.004)DLTDLEDIEGLTVR;RAS(0.915)LS(0.085)DLTDLEDIEGLTVR;RAS(0.5)LS(0.5)DLTDLEDIEGLTVR;RAS(0.956)LS(0.044)DLTDLEDIEGLTVR;RAS(0.981)LS(0.019)DLTDLEDIEGLTVR;RAS(0.992)LS(0.008)DLTDLEDIEGLTVR 400.36 2.822699999999998e-128 1213282000.0 323292.0 418701.0 404822.0 408138.0 413276.0 407297.0 396195.0 359792.0 409961.0 407622.0 True False 321551.43179311766 432637.209674901 461817.41882409813 459808.228952668 465904.2489212347 379141.5170640085 377029.5342381226 386641.5060267571 308931.6047459557 381607.2149772478 0.842624088782727 1.1337238728588914 1.2101904804174959 1.204925407346092 1.2209000004075206 0.9935386496468985 0.9880042080981143 1.0131923371779263 0.8095538884514403 1.0 18.541728922807213 2.591737973502696 5.923111805311534 0.9647939175956086 1.1321155957982634 0.33252678831951654 0.1146380285529368 0.28602597866875323 12.995292245576007 0.03837869431668678 0.03601047156231729 390.60515763024335 -2.591737973502696 0.16732167820265476 RAS(ph)LSEIGFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASLSEIGFGK 11 1 Q00537;Q00537-2;F5H6Z0 Q00537 CDK17 Cyclin-dependent kinase 17 1 RAS(0.958)LS(0.042)EIGFGK 89.911 0.012584 92461000.0 192740.0 196650.0 203300.0 202160.0 193410.0 231130.0 205190.0 189810.0 235420.0 225440.0 True False 191702.30925542722 203195.37637256485 231922.87288472254 227753.43527206825 218039.61706911607 215152.52712149674 195264.17579808025 203974.58603565037 177403.8954663806 211052.2261911054 0.9083169256970687 0.9627729592796321 1.0988885408615354 1.0791330628554474 1.0331074019171143 1.0194278970868498 0.9251936325053058 0.9664649822312402 0.8405687003071144 1.0 17.68724052144352 2.2431538316622124 24.036564615391573 0.9339600782115284 1.0217655816433502 0.2954004271805387 0.06319845626500889 91.30038973532932 477782.8739707443 0.02331365889930945 0.0188798704625442 175.04666124668637 -2.2431538316622124 0.08780550343182181 RAS(ph)PHSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RASPHSAK 8 1 A0A1B0GV68 A0A1B0GV68 1 RAS(1)PHSAK;RAS(0.982)PHS(0.018)AK 78.548 0.018583 116079000.0 125468.0 155677.0 152738.0 104430.0 149929.0 145798.0 162197.0 125315.0 204350.0 183055.0 True False 124792.49422880517 160858.61483626603 174242.18277750464 117650.82729255086 169021.56945119434 135719.32743157537 154350.9114572893 134666.6416366762 153990.6806497104 171372.2731787298 0.7281953603933056 0.9386501786581384 1.0167466390305842 0.6865219507816701 0.9862830568566723 0.7919561602011849 0.9006761046829999 0.7858134757670392 0.8985740679830304 1.0 17.38677418491792 0.9833750564291783 23.31279566540293 1.0000000071517154 0.8570237797650776 0.15571572728956173 0.10283972228130944 760.4967982925034 1066431.7781201953 0.09117533567785474 0.02279383392747252 9.624430848056658 -0.9833750564291783 -0.14297622738663784 RAS(ph)PPDPSPSPSAASASER ddPTM_BT-474_Trastuzumab_2h_R1 2 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 RAS(0.999)PPDPS(0.001)PSPSAASASER;RAS(0.996)PPDPS(0.004)PSPSAASASER 70.569 0.013054 1431080000.0 550570.0 609240.0 523860.0 558290.0 590310.0 590620.0 608110.0 509100.0 637620.0 576300.0 True False 547605.7922940777 629518.1851066424 597614.934527253 628969.4567572365 665482.4794585068 549791.8295699327 578693.396094208 547091.6271574184 480487.0946702634 539520.040604747 1.014986934832425 1.1668114949002018 1.1076788433241285 1.165794427306585 1.2334712881333727 1.019038753321697 1.0726077857006973 1.0140339301283126 0.8905824779589028 1.0 19.04131702440793 1.9199509965594663 1.2847372597803082 0.9531177124748816 1.1328198653438846 0.5227765885047496 0.06644831270995508 0.3428304350431324 1.04806478929261 0.04938172735769113 0.021710923282990253 83.16699246718473 -1.9199509965594663 0.17970215286900293 RAS(ph)PPMGMPSAWWLQNEAGCLFAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RASPPMGMPSAWWLQNEAGCLFAAR 25 1 E9PN18;E9PMU7;E9PL19 E9PN18 PUF60 1 RAS(1)PPMGMPSAWWLQNEAGCLFAAR;RAS(0.999)PPMGMPS(0.001)AWWLQNEAGCLFAAR 158.2 1.5395e-11 231300000.0 82394.0 78087.0 71988.0 66732.0 74687.0 78834.0 100480.0 71088.0 99187.0 90285.0 True False 81950.39985883408 80686.0785904116 82123.2846690871 75180.26435781381 84197.94674546857 73384.39113527497 95619.39852912465 76392.94753754979 74743.69288770657 84522.93400312259 0.9695640695081235 0.9546057474463767 0.9716094884502372 0.8894658620704811 0.9961550405048408 0.8682186911846184 1.1312834753889651 0.9038132483040349 0.8843007376547679 1.0 16.36705522725637 RAS(ph)PS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RAS(1)PS(1)PPPK 76.07300000000002 0.024371 891300000.0 1048500.0 1129200.0 892350.0 1016400.0 1027700.0 1108300.0 1134100.0 1015800.0 1254400.0 1118600.0 True False 1042854.992499302 1166784.7393841853 1017985.123554757 1145076.1357861604 1158571.5033448662 1031685.8296575734 1079239.25031728 1091604.154127883 945269.9280988359 1047209.9903183571 0.9958413328183289 1.114184117962317 0.9720926394574256 1.093454174781174 1.1063411484382943 0.985175694651209 1.0305853270070369 1.042392800126009 0.9026555674965143 1.0 19.998119335006827 1.2600536286043165 24.498219545363398 0.9513278357642811 1.0437786751494993 0.3288371676498234 0.05208050257540737 170.41438803926582 194243.417837839 0.032669893807869305 0.011902792681305771 18.199255771982582 -1.2600536286043165 0.09245083938521814 RAS(ph)PS(ph)PPPKR ddPTM_BT-474_Trastuzumab_2h_R1 5 RASPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR 57.136 0.064125 9722420000.0 1284032.0 1239604.0 1124501.0 1108276.0 1202462.0 1312154.0 1390197.0 1268982.0 1808629.0 1392472.0 True False 1277118.9143813674 1280863.4697835566 1282820.9664620897 1248583.6279659027 1355588.4081493386 1221447.8824582729 1322947.8600417338 1363679.8806000315 1362916.6173369472 1303603.2448047418 0.9796837492320439 0.982556214774848 0.9840578194128652 0.9577942007600018 1.0398780561123744 0.9369782465072227 1.0148393426558935 1.0460850615666335 1.0454995588332472 1.0 20.31407341753652 2.009249569588779 24.97742014990179 1.0343521325523823 0.9816228584119939 0.41734647649571055 0.027216117352004354 164.27853397422166 443614.2724363364 0.009473774903104441 0.006986785406465828 102.15263405099856 -2.009249569588779 -0.052729274140388416 RAS(ph)PSKPASAPASR ddPTM_BT-474_Trastuzumab_2h_R1 5 RASPSKPASAPASR 14 2 E7EVA0;P27816-4;H0Y2V1;F8W9U4;H7C4C5;B5MEG9;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 RAS(0.983)PS(0.017)KPASAPASR;RAS(0.939)PS(0.057)KPAS(0.004)APASR;RAS(0.79)PS(0.208)KPAS(0.003)APASR;RAS(0.999)PS(0.001)KPASAPASR;RAS(0.947)PS(0.045)KPAS(0.005)APAS(0.002)R 112.44 0.00046736 2650070000.0 803980.0 747000.0 726823.0 670004.0 630129.0 949668.0 909121.0 796364.0 1231348.0 977352.0 True False 799651.461010576 771863.4434289645 829153.360741232 754826.4377029416 710372.1930828041 884019.6864380115 865143.34405052 855792.725534453 927898.7846178605 914976.5586068562 0.8739584129107371 0.8435882167344311 0.9062017523199736 0.8249680613154077 0.776382942711032 0.9661664860398395 0.9455360751184574 0.9353165580957435 1.0141230131957475 1.0 19.803375256942946 2.7149630018885054 24.704265625336205 0.9633345666434371 0.8472253453265282 0.7307164399780228 0.03841063971910657 392.77038657248187 411189.4453145352 0.012749600844981102 0.012026463238912663 518.7558435617636 -2.7149630018885054 -0.11610922131690893 RAS(ph)PSPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RASPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RAS(0.931)PS(0.069)PPPKR 83.204 0.008224799999999999 110880000.0 94811.0 104890.0 88370.0 91760.0 86673.0 103190.0 103170.0 98520.0 115170.0 99645.0 True False 94300.54811049231 108381.20024265608 100811.72787419037 103376.80659163526 97710.29279888065 96056.71818313189 98179.27295232666 105872.06267442335 86787.89669893406 93285.57078962345 1.0108803249235385 1.161821697881617 1.0806786839686047 1.1081757416135605 1.0474320087426572 1.0297060667587905 1.0524593688099892 1.1349243165717966 0.9303464186830901 1.0 16.509366324933755 1.2327244750038615 24.99970734868681 0.9651731789175172 1.080847637338652 0.48024440218434405 0.04699697360316323 122.24439195017699 523619.8738966531 0.03990062563629075 0.01103509143915883 17.089307916614647 -1.2327244750038615 0.11567445842113477 RAS(ph)QEANLLTLAQK ddPTM_BT-474_Trastuzumab_2h_R1 8 RASQEANLLTLAQK 14 1 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2;H7C1L3 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK 257.88 1.4205e-24 8583830000.0 9970513.0 9453443.0 9570302.0 8475860.0 8538650.0 10687974.0 10263000.0 9802978.0 12111060.0 10726313.0 True False 9916832.865836121 9768095.135528037 10917717.335043803 9548903.00695049 9625996.46495636 9949139.514164569 9766539.481532713 10534525.996873641 9126451.542889573 10041750.521081435 0.9875601714080564 0.9727482389670117 1.0872324812415308 0.950920159478542 0.9585974521820424 0.9907774041266569 0.972593320360733 1.0490726666389176 0.9088506554439584 1.0 23.259507452219857 RAS(ph)S(ph)KGGGGYTCQSGSGWDEFTK ddPTM_BT-474_Trastuzumab_2h_R1 5 RASSKGGGGYTCQSGSGWDEFTK 23 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 2 RAS(0.975)S(0.547)KGGGGY(0.089)T(0.357)CQS(0.028)GS(0.004)GWDEFTK;RAS(0.915)S(0.883)KGGGGY(0.135)T(0.028)CQS(0.004)GS(0.032)GWDEFT(0.002)K;RAS(0.564)S(0.564)KGGGGY(0.4)T(0.469)CQS(0.003)GSGWDEFTK;RAS(0.832)S(0.832)KGGGGY(0.128)T(0.135)CQS(0.032)GS(0.04)GWDEFTK;RAS(0.935)S(0.936)KGGGGY(0.111)T(0.018)CQSGSGWDEFTK 160.69 1.0002000000000002e-11 2882360000.0 2532030.0 1832810.0 1281260.0 1664160.0 1624890.0 2738490.0 2399700.0 2009710.0 3758880.0 2376020.0 True False 2518397.831814977 1893813.9728929575 1461650.2710884362 1874842.4853698323 1831810.1100224177 2549184.6320120646 2283617.3432557774 2159684.7653006 2832554.3904114706 2224380.3693869333 1.132179489836569 0.8513894471272088 0.6571044643283221 0.8428605607082219 0.8235147797709109 1.1460201083840043 1.0266307753314559 0.9709152243129333 1.2734127802036652 1.0 21.084972079555914 2.7472665357482198 24.796469233913257 1.067676161098396 0.8484722508393063 0.3997570461120534 0.13485811518296825 612.1332769291508 1743496.4794247595 0.042143687502028224 0.04405655535575946 558.8130449540523 -2.7472665357482198 -0.2192039102590897 RAS(ph)SASVPAVGASAEGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RASSASVPAVGASAEGTR 18 1 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YFI4 V9GYZ0 PANK2 Pantothenate kinase 2, mitochondrial 1 RAS(0.453)S(0.453)AS(0.095)VPAVGASAEGTR;RAS(0.472)S(0.472)AS(0.056)VPAVGASAEGTR 66.40100000000001 0.013626 227430000.0 103075.0 126870.0 144302.0 176345.0 162813.0 141599.0 146506.0 132593.0 139666.0 128798.0 True False 102520.05565270918 131092.7912554654 164618.46730453125 198670.2589189398 183546.27048174336 131810.59441819257 139418.9450727301 142487.76295361153 105247.18572851701 120578.00137048436 0.8502384720883632 1.087203219206409 1.3652446170402963 1.6476492947375327 1.5222202092882977 1.0931562384517826 1.1562552330284164 1.1817061266076876 0.8728556165493045 1.0 16.879607195865024 1.5938669837111727 1.284359211587103 0.9481151440962642 1.2840636657282114 0.2226080783443124 0.219942849660361 0.6837963692682021 2.1592832105983746 0.20954043436508862 0.07485104962373874 39.252469400379745 -1.5938669837111727 0.3359485216319472 RAS(ph)SKGGGGY(ph)TCQSGSGWDEFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASSKGGGGYTCQSGSGWDEFTK 23 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 2 RAS(0.644)S(0.567)KGGGGY(0.637)T(0.146)CQS(0.003)GS(0.002)GWDEFTK 94.019 0.015007 980020000.0 1385500.0 988190.0 686450.0 936730.0 884440.0 1465000.0 1301300.0 1131800.0 2026800.0 1230400.0 True False 1378040.6219435204 1021081.3067765301 783096.1932696394 1055319.92195491 997068.1915134126 1363727.9982390576 1238351.147551253 1216260.6631639474 1527322.2977285704 1151874.8186015636 1.1963458178698045 0.8864516267628598 0.6798448760433528 0.9161758768510312 0.8656046433273936 1.1839203151386666 1.0750744156857914 1.0558965640385747 1.3259446886622799 1.0 20.135552507983075 2.7437898811826096 24.76592945078604 1.1208256118552533 0.8953189312184799 0.3668689448489483 0.14331971503539007 421.6207194929117 1996808.381352437 0.04455498467248615 0.0459896217555079 554.3574408131558 -2.7437898811826096 -0.22550668063677337 RAS(ph)SKGGGGYT(ph)CQSGSGWDEFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASSKGGGGYTCQSGSGWDEFTK 23 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 2 RAS(0.94)S(0.201)KGGGGY(0.065)T(0.576)CQS(0.109)GS(0.109)GWDEFTK 67.283 0.002278 0.0 437880.0 313200.0 213550.0 276180.0 272360.0 506060.0 420720.0 336830.0 635480.0 442590.0 True False 435522.50273304107 323624.67266660207 243615.98379012535 311144.3596826268 307043.43159580434 471077.263337104 400368.16629352415 361965.96498808323 478874.46899573266 414343.5272796369 1.0511145319258497 0.7810540079903084 0.5879565330477843 0.75093331788103 0.7410359071171959 1.136924393220165 0.9662710768577281 0.8735890418382125 1.155742608409433 1.0 18.660467859542567 2.7560159177361436 24.681841478903955 1.0017200343688415 0.7697903570911412 0.4558244045219344 0.13160411781707884 696.674868791048 985098.8292585647 0.041579874740588205 0.04400741678585142 570.185170291536 -2.7560159177361436 -0.2319296772777003 RAS(ph)WAS(ph)ENGETDAEGTQMTPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 RAS(1)WAS(0.943)ENGET(0.057)DAEGTQMTPAK 137.7 9.1131e-06 491190000.0 180950.0 175660.0 166500.0 170030.0 147230.0 178760.0 184430.0 165490.0 214130.0 199630.0 True False 179975.78530543513 181506.73691128741 189941.75275605652 191555.78056643135 165978.86779942055 166402.74195577725 175508.41630898137 177839.70414119257 161360.53069499653 186889.44248815853 0.9630067001609176 0.9711984502430512 1.016332170652665 1.0249684413209617 0.88811259528444 0.8903806429104237 0.9391028940551402 0.9515770488344233 0.8634009955122022 1.0 17.511825546996704 3.239716439851684 24.999990080660258 0.9216227327821014 0.9938605662199178 0.43943627488710746 0.0397149806499582 29.32437154718221 634259.4400177734 0.011194423014935282 0.014340878250325557 1736.6665517877777 -3.239716439851684 0.07223783343781642 RAS(ph)WASENGETDAEGTQMTPAK ddPTM_BT-474_Trastuzumab_2h_R1 4 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 RAS(0.982)WAS(0.018)ENGETDAEGTQMTPAK;RAS(0.93)WAS(0.07)ENGETDAEGTQMTPAK;RAS(1)WASENGETDAEGTQMTPAK;RAS(1)WASENGETDAEGTQMTPAK 307.74 2.521699999999999e-67 3232830000.0 1600540.0 1613770.0 1586880.0 1537120.0 1540850.0 1892090.0 1907150.0 1665960.0 2020720.0 2014960.0 True False 1591922.8704767108 1667483.358905433 1810298.9105917758 1731719.2343955354 1737068.1141665229 1761294.2718007753 1814893.8684794975 1790282.3947734677 1522740.6322607442 1886363.5277059535 0.8439109678995341 0.8839671327473633 0.9596765861950897 0.9180198879807201 0.9208554388660218 0.9336982219661141 0.962112467625277 0.9490654205717537 0.8072360443231116 1.0 20.847176298932165 4.452535103331151 4.500392533173451 0.9312530608190128 0.8510755344789249 0.2608679433522748 0.047512983472805546 0.22742696937200557 10.98054689685618 0.011066444321658302 0.03721502049782287 28348.827632872963 -4.452535103331151 -0.0801775263400879 RASEDTTSGS(ph)PPKK ddPTM_BT-474_Trastuzumab_2h_R1 4 RASEDTTSGSPPKK 14 2 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7 Q9BZZ5-2 API5 Apoptosis inhibitor 5 1 RASEDTTS(0.003)GS(0.997)PPKK;RASEDTT(0.01)S(0.037)GS(0.953)PPKK;RASEDTTSGS(1)PPKK;RASEDTT(0.002)S(0.037)GS(0.961)PPKK 204.37 1.0821e-08 2450390000.0 2675780.0 1986260.0 1678350.0 1575110.0 1607781.0 2687120.0 2674920.0 2451200.0 4510840.0 2749810.0 True False 2661373.8977871076 2052371.4633804746 1914647.0915202834 1774518.7645003349 1812522.3802854072 2501365.7192000924 2545523.900413274 2634120.9909413927 3399203.9241592344 2574314.7715692157 1.0338183687478215 0.7972496161102389 0.7437501865217434 0.6893169336159494 0.7040795478093592 0.971662730146766 0.9888161030368513 1.0232318984580588 1.320430571156298 1.0 21.29575703765253 2.165271247337906 1.4080039881818773 1.1247861195914108 0.7900884624161628 0.5498169307952935 0.12430011157259617 0.3215729702705251 1.2245349771943286 0.07893248134529936 0.043156761626483284 146.30906918149367 -2.165271247337906 -0.334697657175248 RASEDTTSGSPPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RASEDTTSGSPPKK 14 2 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7 Q9BZZ5-2 API5 Apoptosis inhibitor 5 0 55.841 0.072838 25745000.0 19747.0 22837.0 21587.0 15771.0 19535.0 21826.0 18677.0 21634.0 30299.0 24151.0 False True 19640.684346097943 23597.115739741977 24626.261962432356 17767.606982962938 22022.666456983512 20317.21999287757 17773.522156931333 23248.43893522607 22832.217435799263 22609.662503288644 0.8686854278891225 1.0436739485301785 1.0891919310538312 0.785841318081532 0.9740378235977759 0.8986078403391633 0.786102939588157 1.0282523647508897 1.0098433549142207 1.0 14.464651836545313 1.6056814298919335 24.999999999999872 1.014295162849062 0.9265745331174073 0.16801948302490488 0.09300608456169109 0.4241456815533501 4775.620781556268 0.04814827643940022 0.023974166431378872 40.33494136011581 -1.6056814298919335 -0.08772062973165462 RASGQAFELILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR 171.0 1.89e-06 1844910000.0 1323030.0 1556710.0 1462810.0 1385210.0 1287420.0 1537640.0 1528460.0 1260820.0 1840640.0 1624100.0 True False 1315906.9534824532 1608524.151298933 1668760.9330275476 1560577.4439712178 1451365.305863819 1431346.5660152237 1454522.5505157814 1354908.7907142343 1387038.9353123724 1520448.5475380365 0.8654728603695375 1.0579273819581148 1.097545152533878 1.0263928013204784 0.9545639069562206 0.9413975687193823 0.9566404288201631 0.8911243941191894 0.9122564111480881 1.0 20.536065565260337 3.131550032434229 3.770483957778322 0.9327263695820804 1.021309184262747 0.2198220251415941 0.062328617745568936 0.29112451944813167 7.851850574085307 0.018727465357065556 0.02298993330973715 1353.7860431704405 -3.131550032434229 0.08858281468066664 RASLS(ph)DLTDLEDIEGLTVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 RAS(0.42)LS(0.579)DLT(0.002)DLEDIEGLTVR;RAS(0.388)LS(0.608)DLT(0.003)DLEDIEGLTVR 123.43 1.9137e-05 50435000.0 29165.0 33463.0 33432.0 34081.0 32300.0 37487.0 35977.0 35097.0 39653.0 36497.0 True False 29007.97888053612 34576.795726189324 38138.93500384672 38395.65110559635 36413.213542900834 34895.61192490613 34236.655064513514 37716.11635895486 29881.049472977607 34167.73021334626 0.8489875885640572 1.0119722764810195 1.1162267661827083 1.1237401743062998 1.0657194175771578 1.0213031918425637 1.0020172499237403 1.1038519715372421 0.8745400787935796 1.0 15.060346791240711 2.4992318972710548 20.605507771854658 1.0140741661129393 1.0419450522501952 0.018179037505494433 0.08875677596360855 462.6255429184211 431134.7481381153 0.030047451488188902 0.027994064375864568 315.6689729589877 -2.4992318972710548 0.027870886137255857 RASNGETLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RASNGETLEK 10 1 Q9BRT3 Q9BRT3 MIEN1 Migration and invasion enhancer 1 0 ; 109.16 0.0032965000000000004 926700000.0 445900.0 514330.0 475370.0 441580.0 486830.0 561270.0 566870.0 460210.0 684640.0 546940.0 False True 443499.3239441478 531449.163130949 542297.9640098886 497483.9827237829 548824.9148325202 522470.7259874639 539448.332446306 494553.20709902904 515919.6457059837 512033.820941108 0.8661524020600921 1.0379180854775492 1.0591057501107166 0.9715842242792033 1.0718528589064504 1.0203832337230636 1.0535404310887329 0.965860431230988 1.0075890001909125 1.0 18.965879580936555 4.742622262772622 24.95592297243207 1.020040878872969 0.8661523407654764 0.6520563573406473 0.03390093339927501 248.34689580865836 1525854.5618545085 0.008049887242404352 0.062199807365681876 55286.90299693069 -4.742622262772622 -0.15388853810749248 RAT(ph)LDEEDLVDSLSEGDAYPNGLQVNFHSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 31 1 B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892;E9PN99;E9PHZ1 B4DKB2 ECE1 Endothelin-converting enzyme 1 1 RAT(1)LDEEDLVDSLSEGDAYPNGLQVNFHSPR 156.73 1.4352000000000002e-09 16618000.0 14489.0 17704.0 17037.0 15697.0 14409.0 22137.0 15183.0 14290.0 18490.0 16788.0 True False 14410.992833879227 18293.266937705994 19435.66151174134 17684.238590550336 16243.900741165882 20606.721294892814 14448.540285307521 15356.392363149687 13933.387253306319 15716.575467070095 0.9169295731168429 1.1639473863778194 1.236634631536851 1.1251966834380018 1.033552173958039 1.3111457606059742 0.9193186082795578 0.9770825963534437 0.8865409186944081 1.0 13.939999278132433 2.199262779146066 24.99909206687771 0.9465135344340647 1.1327979355639766 0.432817213463665 0.10401855893169418 147.10260029419766 93577.628738423 0.03778518574851434 0.02790661002721004 158.2205096662265 -2.199262779146066 0.18628440112991185 RAT(ph)SLPSIPNPFPELCSPPS(ph)QSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 RAT(0.451)S(0.407)LPS(0.142)IPNPFPELCS(0.003)PPS(0.742)QS(0.255)PILGGPSSAR 185.13 1.0358e-19 719840000.0 151490.0 183950.0 166720.0 201980.0 175200.0 175440.0 175710.0 165820.0 273240.0 210280.0 True False 150674.39467212127 190072.6645498767 190192.72684378194 227550.6472905243 197510.68150824215 163312.24574133777 167210.2360226163 178194.3304168986 205903.66322841638 196859.75037023472 0.7653895445297857 0.9655232427776956 0.966133130241636 1.1559023460233446 1.0033065730134434 0.8295867765462261 0.8493876260035051 0.9051841734116192 1.0459408936624819 1.0 17.586808644705762 2.7876836830656986 24.98402506746991 0.91262979597949 0.9809068563749314 0.031759538019633826 0.1069506278987292 1040.5218731664634 529208.275579907 0.03389713195635472 0.0359532764977446 613.3151364172146 -2.7876836830656986 0.06827706039544135 RAT(ph)SLPSIPNPFPELCSPPSQSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 RAT(0.494)S(0.494)LPS(0.013)IPNPFPELCSPPSQSPILGGPSSAR 188.49 4.7315e-20 1352400000.0 134530.0 163270.0 152030.0 204320.0 130040.0 169560.0 162870.0 146110.0 199660.0 198200.0 True False 133805.70542768802 168704.3432512006 173434.502531551 230186.89105059826 146599.82319253313 157838.71630130653 154991.35587617947 157013.4701315468 150456.46830693042 185550.7063124427 0.7211274378140983 0.9092088443313437 0.9347013869055846 1.240560575732836 0.7900795750444547 0.8506500429889344 0.8353045857728758 0.8462024923104148 0.81086443321634 1.0 17.501453967207734 RATS(ph)LPSIPNPFPELCS(ph)PPS(ph)QSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 3 RAT(0.343)S(0.657)LPS(0.001)IPNPFPELCS(0.997)PPS(0.621)QS(0.382)PILGGPSSAR 132.13 2.8547e-08 288700000.0 99706.0 109260.0 88330.0 116690.0 87568.0 118130.0 103820.0 98772.0 151580.0 131230.0 True False 99169.19397437792 112896.65305093529 100766.09622187664 131462.94203550488 98719.26574379999 109963.95114810897 98797.8299690857 106142.86819405324 114225.14006793784 122854.78904834451 0.8072065789421845 0.9189438517248961 0.8202048695246568 1.0700677039441497 0.8035443022489993 0.8950725649354795 0.8041837907532268 0.8639701310486564 0.9297573253167134 1.0 16.90659457146641 0.9815008095018025 3.689235237600558 0.9996363635383644 0.8740873260721603 0.214889459980946 0.07632221607213714 0.30874057077645056 11.467676299848934 0.06877855007603258 0.0177190936527484 9.582985025221214 -0.9815008095018025 -0.12554903746620405 RATS(ph)LPSIPNPFPELCS(ph)PPSQS(ph)PILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 3 RAT(0.151)S(0.848)LPSIPNPFPELCS(0.993)PPS(0.224)QS(0.783)PILGGPSSAR 186.63 4.165e-20 231460000.0 73441.0 95290.0 77670.0 105280.0 83836.0 88728.0 89497.0 84770.0 131030.0 105690.0 True False 73045.60181606209 98461.67004597864 88605.26088025775 118608.43720539834 94512.01766509707 82594.44220324575 85167.68819825893 91095.96785333795 98739.41221204578 98944.77371423865 0.7382461859685922 0.9951174412743087 0.8955021832295829 1.1987337254209112 0.9551996949132071 0.8347529546308923 0.8607598461362984 0.9206748818935222 0.9979244835832768 1.0 16.594335885350006 7.998313613085789 0.006858659659181167 1.8010501769378289 1.0381717768917471e-06 0.03755819511487779 0.11507092677630526 188594.04316294956 100.05381048518451 11861.750294808011 14538.012262746388 99612447.99178363 -7.998313613085789 -1.8010491387660519 RATS(ph)LPSIPNPFPELCSPPS(ph)QSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 RAT(0.118)S(0.881)LPS(0.001)IPNPFPELCS(0.017)PPS(0.743)QS(0.24)PILGGPSSAR;RAT(0.455)S(0.545)LPSIPNPFPELCS(0.012)PPS(0.739)QS(0.249)PILGGPSSAR 243.74 2.3619999999999996e-46 1057620000.0 263570.0 379360.0 351820.0 413400.0 354750.0 383130.0 389580.0 360760.0 528290.0 453360.0 True False 262150.9684053802 391986.7682720374 401353.19792573986 465736.3976131432 399925.3097320148 356645.12489100994 370734.5270598765 387681.743102161 398100.0082233211 424426.1766589765 0.6176597552700354 0.9235687849361753 0.9456372391663872 1.0973319348004287 0.9422729598823779 0.840299549142964 0.8734959044662298 0.9134256189237371 0.937972326205487 1.0 18.69515411224341 4.738619092245954 5.207157387291445 0.9373800812822026 0.6037366496095531 0.6837842509416513 0.06608992374235198 0.09903820386343702 9.201151577862866 0.017134692240952428 0.11863398246232154 54779.62970847038 -4.738619092245954 -0.33364343167264954 RATS(ph)LPSIPNPFPELCSPPSQSPILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 RAT(0.121)S(0.839)LPS(0.04)IPNPFPELCSPPSQSPILGGPSSAR 243.59 4.2118e-47 1290800000.0 271670.0 328260.0 323340.0 429910.0 286340.0 381890.0 313780.0 307390.0 445630.0 428990.0 True False 270207.35890537483 339185.9356626395 368863.4614783382 484336.5619203342 322803.7017298519 355490.84317236365 298601.2626439958 330329.0026947925 335810.45763606805 401611.4909231831 0.6728078379536652 0.8445623278431447 0.9184584351170653 1.205982828845338 0.803771079825988 0.8851610354952691 0.7435077665671418 0.8225088429005512 0.836157493562103 1.0 18.615441022761168 RATSLPS(ph)IPNPFPELCSPPSQS(ph)PILGGPSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RATSLPSIPNPFPELCSPPSQSPILGGPSSAR 32 1 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 2 RAT(0.042)S(0.145)LPS(0.813)IPNPFPELCS(0.006)PPS(0.366)QS(0.628)PILGGPSSAR 105.53 1.9193e-05 539310000.0 76113.0 88793.0 97967.0 126650.0 115910.0 113560.0 104920.0 104120.0 121610.0 125180.0 True False 75703.21606494923 91748.42132849805 111759.90205557106 142683.87701428283 130670.45144760497 105709.8644914862 99844.61876667748 111889.96311064716 91640.84499051287 117190.90522800997 0.6459820061775177 0.7828971126214078 0.9536567862337765 1.2175337048269488 1.1150221187673977 0.9020312991508519 0.8519826566098874 0.9547666083212759 0.7819791545445768 1.0 16.838501086077763 4.39402232694835 2.9501265913461943 0.9748515540190241 0.6628725196569974 0.4548885147240146 0.11747823433336729 0.2536569605189216 4.195108249464118 0.03245820582829659 0.12812013757530755 24775.49424428099 -4.39402232694835 -0.3119790343620267 RATVVESSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RATVVESSEK 10 1 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 132.56 0.0003532 204660000.0 311330.0 290610.0 266550.0 245780.0 248380.0 323400.0 315540.0 297680.0 443440.0 336400.0 False True 309653.8338720151 300282.7781725453 304077.92310586653 276895.7227996089 280009.72073639976 301044.1192017136 300276.12472014345 319894.39318841166 334160.1537915715 314930.6639934702 0.9832444702127688 0.9534885373333205 0.9655392690251696 0.8792275712007201 0.8891154554013372 0.955906025105118 0.9534674106119098 1.0157613397565008 1.0610594394152104 1.0 18.264674710276392 1.756723947173035 2.4334349809876197 1.033664361376238 0.9354646765013347 0.5842649029562381 0.03339240577172287 0.1920821144308626 2.308283897888452 0.0223521896979685 0.010005687383035656 57.11155002010151 -1.756723947173035 -0.09819968487490327 RAVDLIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RAVDLIQK 8 1 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 134.05 0.0014321 342180000.0 413000.0 478230.0 438620.0 386330.0 363830.0 450310.0 511710.0 402820.0 709980.0 529470.0 False True 410776.4538886139 494147.5964538607 500373.88344661554 435239.3383886925 410161.5939106378 419181.12961572 486956.63237796916 432880.4738785132 535014.9422445876 495678.77129792765 0.8287150422298735 0.9969109533578419 1.0094720864006215 0.8780673363295841 0.827474601820521 0.845670934258694 0.9824036464238327 0.8733084790882247 1.0793581916846242 1.0 18.919045947489504 1.2397877512813122 24.999971421179673 1.0396791222511603 0.9083510374669536 0.3870914831928711 0.06757052987762438 33.407356803709234 680721.4113993979 0.052640470958790334 0.01680046398746131 17.369517369512074 -1.2397877512813122 -0.13132808478420677 RAVS(ph)PSNPK ddPTM_BT-474_Trastuzumab_2h_R1 6 RAVSPSNPK 9 1 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 1 RAVS(0.956)PS(0.044)NPK;RAVS(0.995)PS(0.005)NPK;RAVS(0.991)PS(0.009)NPK;RAVS(0.986)PS(0.014)NPK;RAVS(0.997)PS(0.003)NPK;RAVS(0.984)PS(0.016)NPK 161.27 6.849699999999999e-05 2406290000.0 2190870.0 2475110.0 2264100.0 2158360.0 2103470.0 2414870.0 2576690.0 2441340.0 3343540.0 2574540.0 True False 2179074.599348539 2557492.540114409 2582865.6000900157 2431608.1546983616 2371334.4362565186 2247935.720892525 2452045.66078832 2623525.1876733303 2519569.368140609 2410230.653025411 0.904093803891044 1.0610986699153249 1.071625903042892 1.0088694837758023 0.9838620354777795 0.9326641489978698 1.0173489652164291 1.0884954866789136 1.0453644197819623 1.0 21.200739784681144 1.9883070176377218 24.61448287881413 1.0540701654522548 0.9984213085157887 0.1515077400223025 0.05197562773784144 782.93432680083 1648127.1924308643 0.02112776466460223 0.014480825327473069 97.34351352177595 -1.9883070176377218 -0.05564885693646615 RAVVVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 RAVVVSPK 8 1 O75909;G3V5E1;O75909-1 O75909 CCNK Cyclin-K 1 RAVVVS(1)PK;RAVVVS(1)PK;RAVVVS(1)PK;RAVVVS(1)PK 89.266 0.008592 2754630000.0 5674410.0 5473820.0 4818650.0 4554470.0 4699800.0 5540440.0 5511090.0 5518070.0 7840850.0 5637360.0 True False 5643859.607046212 5656012.7897059405 5497074.035543376 5131065.435019677 5298291.67210295 5157442.423592904 5244497.522291732 5929856.4035917055 5908577.579507131 5277578.858413291 1.0694031787036231 1.0717059737893573 1.041590127408551 0.9722385155533869 1.0039246810413147 0.9772364491287759 0.9937317211151052 1.1235940878720516 1.1195621587137308 1.0 22.33144480003385 1.7426456562185526 24.949436331429396 1.0911789449319642 1.0175456803380325 0.27499347491653703 0.04560793057626775 0.8321008651038574 5106.720965403608 0.02191497563195661 0.012152897599025355 55.28988112827676 -1.7426456562185526 -0.07363326459393171 RCDDLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RCDDLTR 7 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ; 145.34 0.0036768 932400000.0 240083.0 340690.0 321420.0 330100.0 303110.0 259888.0 281747.0 231629.0 335740.0 287360.0 False True 238790.41980372867 352029.66069854586 366673.14216727705 371890.62615408417 341709.2618262743 241922.5542705472 268117.8212319397 248914.33216822956 253001.3756855095 269020.4387787266 0.8876292852980491 1.308561023454785 1.362993621718353 1.382387999374166 1.2701981432248548 0.8992720232291799 0.9966447993658604 0.9252617879081128 0.9404541039114391 1.0 18.037356259875033 2.743202280691169 24.611071956089773 0.9496122069780101 1.2605140642736679 0.5441371562071763 0.1321978138399547 234.22186385686533 1241894.3926815302 0.041399406868095366 0.04259955635870234 553.6079022996313 -2.743202280691169 0.3109018572956578 RCDELTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RCDELTR 7 1 P17844;P17844-2;J3KTA4;J3QSF1 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 171.73 0.0014857999999999998 516357000.0 249933.0 355940.0 350400.0 310130.0 344460.0 250314.0 311290.0 253820.0 202425.0 352190.0 False True 248587.38849816678 367787.2477297264 399733.27426860126 349392.4262016548 388324.9392256228 233010.3823557754 296231.71345672006 272761.33727184427 152540.07110603192 329712.9326749712 0.7539509793606506 1.1154771659875673 1.2123675920915595 1.0596867504317264 1.1777667805600787 0.7067068327146132 0.8984534244786306 0.8272691491320135 0.46264509513918556 1.0 18.330850950890433 2.7353952528639107 24.87798191009793 0.7833931347190352 1.0747377416939499 0.39843744681157545 0.17469687283226418 264.1772378285137 2076275.3713566049 0.05437780093018134 0.05326458174987793 543.7449704924832 -2.7353952528639107 0.2913446069749147 RCDIIIISGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RCDIIIISGR 10 1 Q00341;A0A024R4E5;Q00341-2;H0Y394 Q00341 HDLBP Vigilin 0 ;; 172.13 6.1112e-06 1866380000.0 328109.0 405210.0 377650.0 418810.0 402080.0 402300.0 412640.0 421410.0 468706.0 406200.0 False True 326342.49760033697 418697.1698953823 430819.8374073559 471831.30305844377 453282.5046851262 374489.9479123362 392679.0267621215 452857.7540766209 353199.68663862586 380275.96823468327 0.8581728135892568 1.1010350505162287 1.1329136558571065 1.2407602438007812 1.1919830400783773 0.984784680585505 1.0326159409573412 1.190866086486813 0.928798336319408 1.0 18.5366872443174 1.2233373183169716 24.997171336128364 0.9643990980006596 1.0995654517290556 0.1791542160791305 0.10788382234777615 450.64031078529223 739945.7608792933 0.10302372327595845 0.026152633017371335 16.723890614788886 -1.2233373183169716 0.13516635372839603 RCPT(ph)PEIQK ddPTM_BT-474_Trastuzumab_2h_R1 4 RCPTPEIQK 9 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK 132.79 0.00017296 3170510000.0 4333650.0 3891760.0 3603610.0 3268390.0 3454030.0 4323730.0 4201310.0 3892410.0 4873670.0 4208180.0 True False 4310318.109913777 4021294.8789814003 4110966.9648603783 3682167.8388844193 3893880.2468602443 4024840.722065637 3998076.5847372278 4182881.399457493 3672619.332332145 3939610.349595843 1.0940975699172797 1.0207341645840526 1.0434958282821332 0.9346527986612092 0.9883922269773989 1.0216342137690184 1.014840613652917 1.0617500281180363 0.9322290801446677 1.0 21.9096215151214 4.912297346026393 1.5014840771201636 1.0032756646140233 1.1593834105136802 0.346909655764597 0.03911337059446507 2.1889915871250003 3.3163565129905463 0.010737036441483707 0.5715843088378534 81714.16477788315 -4.912297346026393 0.15610774589965692 RCQYVTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RCQYVTEK 8 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;P09972 H3BPS8;P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C 0 ;;; 181.53 0.00037416 1561760000.0 1552270.0 1599290.0 1378146.0 1165390.0 1088574.0 1627680.0 1778080.0 1310166.0 2369770.0 1814400.0 False True 1543912.7507934116 1652521.4008587787 1572176.977740228 1312928.2545098711 1227197.4464164018 1515162.312746585 1692067.4774747805 1407937.2398081457 1785771.9367911143 1698603.4386140078 0.9089306636828561 0.9728706320100058 0.92557034914698 0.7729457180312598 0.7224743683656649 0.8920047365398581 0.9961521559472644 0.8288793062593621 1.0513177450342575 1.0 20.695917644963476 1.233107115595403 24.999905731409708 1.02565894457088 0.8775905221716612 0.3497086605149725 0.08082593344016818 170.22346097613575 780295.5427532675 0.07528977064500131 0.02093069206036482 17.10437130026484 -1.233107115595403 -0.1480684223992187 RCS(ph)DPSLNEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RCSDPSLNEK 10 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 RCS(1)DPSLNEK;RCS(1)DPSLNEK;RCS(0.892)DPS(0.108)LNEK 133.16 0.00012529 790536000.0 1216921.0 1100435.0 958442.0 991434.0 952946.0 1274947.0 1290630.0 1076478.0 1558430.0 1279860.0 True False 1210369.232548633 1137062.3137479958 1093382.3026727927 1116949.4427459822 1074298.0245465375 1186812.9147924164 1228197.2962146117 1156810.254604524 1174375.808392113 1198178.239056727 1.0101746076622986 0.9489926262082301 0.9125372728631465 0.9322064166557619 0.8966095273039554 0.9905144961794182 1.025053916169866 0.9654742649267524 0.9801344825930469 1.0 20.192411106395845 2.6931691553005463 21.616849196183807 0.9908222370111054 0.9386276686178012 0.41050217511872833 0.03118772879719175 97.91170778991152 46628.00258052544 0.010431513321951814 0.009835069501702985 493.36592983957746 -2.6931691553005463 -0.052194568393304164 RCS(ph)SSLGVPLTEVVEPLDFEDVLLSRPPDAEPGPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RCSSSLGVPLTEVVEPLDFEDVLLSRPPDAEPGPLR 36 2 Q96HP0 Q96HP0 DOCK6 Dedicator of cytokinesis protein 6 1 RCS(0.756)S(0.205)S(0.04)LGVPLTEVVEPLDFEDVLLSRPPDAEPGPLR;RCS(0.764)S(0.189)S(0.047)LGVPLTEVVEPLDFEDVLLSRPPDAEPGPLR;RCS(0.684)S(0.131)S(0.185)LGVPLTEVVEPLDFEDVLLSRPPDAEPGPLR;RCS(0.734)S(0.115)S(0.151)LGVPLTEVVEPLDFEDVLLSRPPDAEPGPLR 221.93 2.2161e-39 519277000.0 102391.0 100056.0 102191.0 114664.0 108324.0 111401.0 110271.0 100016.0 129158.0 114646.0 True False 101839.73823270953 103386.30347487086 116578.60453990474 129180.45064323513 122118.41931334944 103700.11107974671 104936.7704538724 107479.70179095729 97328.74152853103 107329.19412662112 0.9488540285932322 0.9632635772229999 1.0861779545495485 1.203590986538435 1.1377931261580219 0.9661873633133496 0.9777094788401536 1.001402299398229 0.9068244881603033 1.0 16.71168302483681 2.7128049726419636 24.163004989378745 0.9736911410563844 1.070670644155484 0.3017630630706081 0.07402226645981307 729.0284602241126 683946.2258932655 0.026869043644179746 0.02534215584948966 516.1845157400585 -2.7128049726419636 0.09697950309909964 RCS(ph)VTSMESTVSSGTQTTVQDDPEQFEVIK ddPTM_BT-474_Trastuzumab_2h_R1 4 RCSVTSMESTVSSGTQTTVQDDPEQFEVIK 30 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 RCS(0.482)VT(0.034)S(0.034)MES(0.034)T(0.028)VS(0.123)S(0.123)GT(0.102)QT(0.03)T(0.011)VQDDPEQFEVIK;RCS(0.985)VT(0.015)SMESTVSSGTQTTVQDDPEQFEVIK;RCS(1)VTSMESTVSSGTQTTVQDDPEQFEVIK;RCS(0.992)VT(0.008)SMESTVSSGTQTTVQDDPEQFEVIK 310.72 1.9086999999999992e-92 2841800000.0 1021512.0 1145401.0 1144552.0 1060394.0 1140194.0 1410208.0 1350581.0 1249179.0 1453597.0 1434516.0 True False 1016012.2928926519 1183524.979875475 1305694.9729756743 1194639.7716753553 1285390.9474406897 1312723.640232561 1285248.2373095502 1342399.080182434 1095377.4965518822 1342963.9607290626 0.7565447194436129 0.8812782877903648 0.9722487059644134 0.8895546020660259 0.9571298895786318 0.9774824035634695 0.9570236245295966 0.9995793777322797 0.8156417659616334 1.0 20.35698915899266 4.659823607917126 2.307987449537992 0.9490797574232099 0.7265250108278084 0.5401281085647996 0.05320115482691875 0.3448533493319845 2.4747659343720034 0.01277349529601126 0.144265637217727 45690.257738674314 -4.659823607917126 -0.22255474659540153 RDDASMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDDASMDR 8 1 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C0E9;V9GYY9 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 0 60.91 0.093718 79547000.0 91129.0 96378.0 75416.0 89132.0 89549.0 84615.0 92621.0 83804.0 114370.0 101620.0 False True 90638.37158938365 99585.88346826858 86033.91727237693 100416.1020610902 100952.53435149306 78765.76421228512 88140.56838342015 90057.88002808926 86185.04597948332 95134.5245987409 0.9527389974531206 1.0467901520326366 0.9043395931734711 1.0555169375642122 1.0611556086214904 0.8279409031001516 0.9264835111667409 0.9466372004058049 0.9059281721645768 1.0 16.537681373931598 2.754559835166959 24.99846765956254 0.9209604163417273 1.0037928041461084 0.3212740378617477 0.06010636084680028 977.323120489493 1527046.6355028185 0.01789248733687915 0.01892709556384384 568.2766808065179 -2.754559835166959 0.08283238780438107 RDDAYWPEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDDAYWPEGK 10 1 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 78.903 0.038418 0.0 230640.0 260780.0 227450.0 206570.0 233990.0 231900.0 225120.0 245330.0 320050.0 256200.0 False True 229398.25986651305 269459.90465516085 259472.9829691595 232721.7408199005 263787.2395326117 215869.2988338819 214230.08555808658 263637.7703604979 241177.96595028052 239849.09665614474 0.956427449861884 1.1234559913371993 1.0818176369500703 0.9702839996664142 1.0998050157795067 0.9000213127479858 0.8931869602378099 1.0991818357292265 1.0055404390204599 1.0 17.871767480362895 2.7627443845765014 24.994512495422544 0.9878625689051855 1.0483848762181953 0.16778470240489674 0.07313325952178237 1677.0096920862675 1733227.6633457127 0.023308210653541914 0.024712596332975727 579.0877587934066 -2.7627443845765014 0.06052230731300978 RDDFCK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDDFCK 6 1 P32456;H3BNS1;Q9H0R5-4;P32455;Q9H0R5 P32456 GBP2;GBP3;GBP1 Interferon-induced guanylate-binding protein 2;Guanylate-binding protein 3;Interferon-induced guanylate-binding protein 1 0 ; 96.51 0.067547 421670000.0 576830.0 571600.0 521240.0 515900.0 477660.0 579330.0 632760.0 538280.0 769360.0 620470.0 False True 573724.4113718383 590625.3604605035 594626.0613007013 581212.8871035816 538487.1696873686 539282.2806961307 602150.9814220627 578449.1869304563 579761.5368958217 580871.073388907 0.9876966467354386 1.0167925164782061 1.0236799326768766 1.000588450226451 0.9270338881668473 0.9284027134452749 1.0366344770948996 0.9958305955152476 0.9980898747692631 1.0 19.147858461779443 -0.44900051387132134 6.526992319884076 1.0000040672767323 0.9912575830762047 0.006287345437200442 0.03464831847411121 0.0 0.0 0.03572377671369349 0.008420174921282253 0.35563089777471996 0.44900051387132134 -0.008746484200527593 RDDGLSAAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDDGLSAAAR 10 1 F8WBN3;B9A031;C9JQZ0;B8ZZY7;F8WBV6;P84101-4;P84101;P84101-3;P84101-2 F8WBN3 SERF2 Small EDRK-rich factor 2 0 ;;; 202.68 3.5133e-07 1335180000.0 602200.0 720880.0 684670.0 661090.0 537890.0 565190.0 624290.0 603490.0 789320.0 601630.0 False True 598957.8221107097 744874.0550188377 781065.5847416766 744783.9262169156 606387.1031761895 526119.745614152 594090.7076806055 648525.4882601268 594802.6623461188 563233.4583186428 1.0634272756073668 1.3224961053315725 1.3867528166265253 1.3223360850050259 1.076617687071305 0.9341059872130428 1.0547858954510219 1.1514328182776936 1.0560499444079832 1.0 19.103373512809455 3.2028242072906905 7.231985049864847 1.0543473833423664 1.285312432946063 0.5810264139643059 0.09461138846565945 0.1456955390161259 22.58338377266582 0.028708981747662236 0.03486878187178272 1595.2333017116018 -3.2028242072906905 0.23096504960369657 RDDGSWEVIEGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDDGSWEVIEGYR 13 1 P00367;P49448 P00367 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial 0 ;; 181.72 1.3045e-05 385320000.0 195889.0 270237.0 269457.0 270084.0 283699.0 334050.0 228780.0 197841.0 267885.0 283206.0 False True 194834.35538931386 279231.6751832841 307394.2034377697 304276.60670766386 319826.3860342857 310957.9097691172 217713.03737552863 212604.90003624186 201868.331225093 265131.5506151449 0.7348591857033574 1.0531816169574115 1.1594025785485325 1.147643899798785 1.2062931978191227 1.1728438544852482 0.8211509979495152 0.801884572179232 0.7613893207229703 1.0 18.016348835353362 2.2280614330647617 24.927592293988237 0.8263257505946672 1.0904179207930422 0.4009338494566852 0.1382269992275114 188.75856803195157 448154.8931900299 0.05277146024311197 0.039390072862083424 169.06800696403465 -2.2280614330647617 0.26409217019837505 RDDGTGQLLLPLSDAR ddPTM_BT-474_Trastuzumab_2h_R1 6 RDDGTGQLLLPLSDAR 16 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;;; 204.78 3.8984e-11 4781660000.0 2368430.0 2785570.0 2573580.0 2582370.0 2607380.0 2758630.0 2902130.0 2473810.0 3021040.0 2728820.0 False True 2355678.636037309 2878286.013537374 2935917.6940416317 2909297.777223637 2939414.387847948 2567932.4012165233 2761742.8846867876 2658418.2639526464 2276545.171862008 2554664.3713396573 0.9221088540887269 1.1266787315893125 1.1492381257511515 1.138818002811857 1.1506068745564917 1.0051936489292752 1.0810589898502163 1.0406135122002664 0.8911327833911096 1.0 21.284702333438183 1.4478156555598665 3.8095364986087183 0.946520715649965 1.087116205581302 0.35042893249222096 0.07248735499005919 0.22489823296411385 6.077374357331903 0.05160925820491225 0.01866318865996505 28.042430717115966 -1.4478156555598665 0.14059548993133697 RDDMESLGYVLMYFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDDMESLGYVLMYFNR 16 1 P48729-2;A0A5F9W493;U3KPX3;A0A590UJ43;P48729;E7ETM0;P48729-3;D6REM4;H0Y9X2;U3KQK7 P48729-2 CSNK1A1 Casein kinase I isoform alpha 0 ; 208.43 2.3835e-11 374110000.0 255810.0 338610.0 292410.0 326510.0 254730.0 277430.0 305330.0 267370.0 383940.0 299000.0 False True 254432.7473831628 349880.4291559326 333578.786326717 367846.1325221759 287168.35559700127 258251.91709997357 290560.02142613067 287322.50707734993 289323.13153241953 279917.56401322107 0.9089559930978302 1.2499409616875883 1.1917036628361106 1.314123084126303 1.025903310531231 0.9225999019046044 1.0380199700952204 1.0264540136673206 1.0336012052418198 1.0 18.094642489106715 3.080093220942315 11.122565423296454 1.0066959339363748 1.1738488733745351 0.36463553362821977 0.10255153449768942 0.4844407844761136 64.49473531982714 0.028991214563954204 0.0346630038362226 1202.5225273576414 -3.080093220942315 0.16715293943816034 RDDNSAANNSANEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDDNSAANNSANEK 14 1 D3DQV9;P78344;H0Y3P2;P78344-2;H0YCH5;H0YD77;H0YEC5;H0YD99;H0YEN8;H0YDC0;H0YCF8;H0YEI7 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 ; 220.32 7.5054e-12 956810000.0 631240.0 571730.0 522080.0 542040.0 498410.0 603760.0 638140.0 640530.0 854830.0 715220.0 False True 627841.4739773578 590759.6874319174 595584.3259992907 610662.2084233863 561879.5591924827 562023.4922981656 607270.7302684668 688329.6011454358 644168.6006351452 669574.0472693518 0.9376729527343732 0.8822917940758694 0.8894973280822263 0.9120159464271069 0.8391597038205598 0.839374666013718 0.9069508185764225 1.0280111721064649 0.9620573008499737 1.0 19.35288408446154 1.8647090171890994 5.152582022213617 0.9965475302226287 0.8822628773773324 0.720223692755802 0.031634181816241606 0.1167825425328758 4.234154396489961 0.01481346599874035 0.008679840347001902 73.23336958594727 -1.8647090171890994 -0.11428465284529621 RDDVTLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDDVTLLR 8 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 114.86 0.007797 0.0 295700.0 312200.0 217540.0 278430.0 262900.0 339000.0 210010.0 241510.0 295360.0 321960.0 False True 294107.98405535874 322591.3882711143 248167.7411084232 313679.20945192885 296378.75666961714 315565.72792016383 199851.01398389213 259532.7025629312 222572.48562123088 301412.2371561765 0.9757665675098883 1.0702663943400674 0.8233499191999802 1.0406983220438932 0.9833003446241925 1.0469572532871443 0.6630487729014781 0.8610556260476397 0.7384321476831917 1.0 18.201378465115564 2.255622105413562 24.987880742066185 0.8051266117750856 0.9881196214657154 0.4062481053384156 0.10297446149337422 212.19516815772351 310775.7547031183 0.03319280936495078 0.027705895065053745 180.14495553897305 -2.255622105413562 0.18299300969062982 RDEELVLPINSSLSVTLHQDQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDEELVLPINSSLSVTLHQDQLK 23 1 P53602;H3BP35;H3BQ47 P53602 MVD Diphosphomevalonate decarboxylase 0 ; 219.07 1.3897e-32 211370000.0 109739.0 111521.0 107909.0 97885.0 104689.0 129816.0 127224.0 122664.0 155495.0 137085.0 False True 109148.17741714916 115232.90906913203 123101.64923815802 110277.23096362478 118020.52360968241 120842.12547399409 121069.68907712324 131817.8105551711 117175.34077625032 128336.11793562672 0.8504868245422367 0.8978992891691858 0.959212817235953 0.8592844534921941 0.9196204896027897 0.9416065205790968 0.9433797049857132 1.0271294836991314 0.9130347922400563 1.0 16.969567723068668 2.456195459119141 1.484996683263178 0.9818800675780609 0.8968252395086135 0.44738597491372933 0.03950190280805732 0.35650983379131224 1.5917919321173433 0.019154851185334963 0.014189445140314201 285.8876923611623 -2.456195459119141 -0.08505482806944742 RDEFEFLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RDEFEFLEK 9 1 Q14258;A0A3B3IUA7 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 ;;; 191.55 5.7342e-05 1786520000.0 2864520.0 2783380.0 2475430.0 2363030.0 2278300.0 2965040.0 2786030.0 2653450.0 3934410.0 2918960.0 False True 2849097.7425980913 2876023.1207112577 2823949.027176726 2662189.355713073 2568428.0004579276 2760073.7637533983 2651259.0852318583 2851463.9129460887 2964827.373892965 2732669.4737526146 1.0426060560795127 1.0524591972558555 1.0334030713559963 0.9742083267967439 0.9398970585823745 1.0100283954074956 0.9702084758867818 1.0434719384596267 1.0849564509613163 1.0 21.381879540559204 -0.3837901504792871 6.674902066696145 1.0000000010960335 1.0146584867151416 0.011970729769870125 0.04189995986386414 0.0 0.0 0.042955317094449406 0.010124665335167869 0.41324713327380574 0.3837901504792871 0.014658485619108097 RDELLAQHAAGALGLPDLVAVLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDELLAQHAAGALGLPDLVAVLTR 24 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ; 170.16 5.3859e-12 758080000.0 363850.0 405820.0 348710.0 342700.0 315240.0 445400.0 403320.0 353200.0 465340.0 431430.0 False True 361891.07202753494 419327.47337662923 397805.33695834526 386085.784862177 355383.94542613183 414610.54635882244 383809.8707679795 379557.5775132587 350663.192236537 403895.76803419413 0.8960011484866486 1.0382071478924946 0.9849207851186664 0.9559045066040174 0.8798902428609867 1.0265285728958695 0.950269602070913 0.9397414074443212 0.8682021946980379 1.0 18.623623504191436 3.566612255739656 5.713233421938403 0.9431863373981074 0.9787974448247025 0.048701170550080164 0.05505439399408722 0.6150051548988337 31.01448100757681 0.014271838946837544 0.022182337556859225 3686.4831716314893 -3.566612255739656 0.03561110742659512 RDELSEEINNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDELSEEINNLR 12 1 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;A0A087WYS2;B4DSP0;A0A087WZG9;Q86TG7-2 A0A087WXK2;B4DSP0 PEG10 Retrotransposon-derived protein PEG10 0 ;;; 318.9 2.1441e-46 1317920000.0 723260.0 815240.0 782660.0 739680.0 660090.0 847620.0 850530.0 653590.0 739940.0 796530.0 False True 719366.0485217397 842374.7705770131 892851.7249973268 833323.412158902 744148.548840043 789026.0244828588 809386.6145598771 702364.204662772 557591.7016880192 745694.7734563578 0.964692356884061 1.1296508981450084 1.1973420718223413 1.1175127435805647 0.997926464457907 1.0581085620671002 1.0854127497880968 0.9418923528285642 0.7477479010661895 1.0 19.508225704206883 1.6055783955039864 3.7120938164461665 0.8659763958095722 1.0828063081955266 0.5020115035046326 0.08430453251954796 0.13722088252926698 4.402025017874684 0.050744036431311416 0.02194188351051466 40.32537321401784 -1.6055783955039864 0.2168299123859544 RDELTLEGIK ddPTM_BT-474_Trastuzumab_2h_R1 4 RDELTLEGIK 10 1 P38919;I3L3H2 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ;;; 181.87 2.9514e-06 2427070000.0 2217120.0 2335860.0 2353050.0 2133100.0 2018070.0 2274960.0 2466500.0 2237590.0 3376330.0 2481730.0 False True 2205183.2722651884 2413607.6880428093 2684338.986922751 2403150.241288327 2275059.2524619806 2117697.3698798097 2347185.9720549965 2404570.3280517925 2544278.712004094 2323343.8666840536 0.9491420120313454 1.0388508230112243 1.1553773960950176 1.0343497902952161 0.9792176203813574 0.9114868445635003 1.0102619787422906 1.0349610156862694 1.0950934764707754 1.0 21.14777126546217 6.829418425862299 11.308962583053717 1.0223264194338557 0.41114883421641857 0.0 0.06612005331002507 0.0 0.0 0.015353628717452782 0.0 6751782.224176354 -6.829418425862299 -0.6111775852174371 RDEMDELEGFQQQELSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDEMDELEGFQQQELSK 17 1 Q92805;R4GNH1 Q92805 GOLGA1 Golgin subfamily A member 1 0 146.78 6.8001e-07 205790000.0 183500.0 237120.0 206890.0 201780.0 217650.0 278410.0 242600.0 236560.0 246150.0 248120.0 False True 182512.05638876645 245012.39585793298 236018.31367988288 227325.3273110305 245366.43738737982 259164.17200664562 230864.51117800217 254213.30842734055 185489.6307410141 232284.76917378046 0.7857254568947769 1.054793203744799 1.016073135226999 0.9786493024041554 1.0563173739721716 1.11571745719047 0.9938857033079266 1.0944036896244136 0.7985440948228626 1.0 17.825535034705638 4.74366576392656 24.490120719495764 1.0211396176152858 0.785725325064611 0.3957312225827033 0.08321788104997298 384.5043687045929 1844441.7371310366 0.01868585044359169 0.15687638065282394 55419.90333355756 -4.74366576392656 -0.2354142925506748 RDENWDKEIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDENWDKEIEK 11 2 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 179.67 3.9372e-06 158640000.0 317000.0 276520.0 234960.0 232950.0 218780.0 340030.0 347060.0 312190.0 527590.0 389100.0 False True 315293.3072220106 285723.80104012997 268040.32569106895 262441.44611509854 246640.33618934485 316524.5264445233 330271.38190205046 335487.2030686983 397572.51384380116 364267.30487473035 0.8655547807960375 0.7843794851102239 0.7358341583339373 0.7204639082427416 0.6770861202439323 0.8689347690794661 0.9066731421740666 0.9209918062343547 1.0914306843446306 1.0 18.474637984994104 1.965681838375643 1.2027187949431513 1.0279521692986395 0.7584185001667559 0.756021507866086 0.061127280791123395 0.23680070107194032 0.6326786399434545 0.04843706464026128 0.02196048213194387 92.40209934863738 -1.965681838375643 -0.2695336691318836 RDEQDDDDKGDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDEQDDDDKGDSK 13 2 Q9H4A6;D6REM1 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 0 ; 210.14 1.8162e-08 1837730000.0 3410330.0 1918470.0 1493590.0 1463080.0 1567180.0 1946770.0 2663590.0 2237210.0 4375750.0 2322800.0 False True 3391969.162203283 1982325.1142103928 1703874.4894829914 1648305.7779870278 1766751.0835963862 1812194.372103652 2534741.975798082 2404161.9705221932 3297405.044545978 2174556.9153508674 1.559843818415755 0.9115995540133022 0.7835501924345214 0.7579961537686732 0.8124648617492354 0.8333625849527384 1.1656360695388368 1.1055870524935323 1.5163572042049482 1.0 21.052290038723935 2.163710388075931 6.310242478489798 1.1973050229382851 0.9204645793022975 0.19601488579167092 0.2495973009451008 0.3359316064789271 22.11497789346345 0.09520989888203392 0.07026138544152112 145.78417653815228 -2.163710388075931 -0.2768404436359876 RDESLK ddPTM_BT-474_Trastuzumab_2h_R1 5 RDESLK 6 1 P12429;D6RA82;D6RFJ9 P12429 ANXA3 Annexin A3;Annexin 0 ;;;; 127.31 0.027443 1222180000.0 2381240.0 2185830.0 1919010.0 1946890.0 1845900.0 1687110.0 2215890.0 2008310.0 2918230.0 2434820.0 False True 2368419.668420634 2258584.030187864 2189189.927666063 2193366.07438087 2080964.4234935194 1570484.0567297575 2108698.935178164 2158180.2901915447 2199071.318778588 2279427.7030457226 1.039041363433463 0.9908557429437188 0.9604120914828377 0.9622441946503243 0.9129328474480587 0.6889817363504489 0.9251001610450577 0.9468079585537327 0.9647471230784095 1.0 21.120240221075008 3.9038580224810517 1.3903668433590235 0.9019291022579806 1.0221758965256067 0.21457498368063477 0.08001870287161424 0.7484015162234284 2.6806394525101735 0.025707953715987407 0.08142290910846932 8014.160253825683 -3.9038580224810517 0.12024679426762608 RDESLKVDEHLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDESLKVDEHLAK 13 2 P12429;D6RA82;D6RFJ9 P12429 ANXA3 Annexin A3;Annexin 0 77.91199999999998 0.01481 138600000.0 186180.0 219060.0 182160.0 202740.0 207940.0 251140.0 268090.0 223680.0 366110.0 277850.0 False True 185177.62756654277 226351.27967543362 207806.54463689646 228406.86321259968 234419.926443059 233779.28291997057 255121.46249674604 240372.13742402557 275887.09612265986 260117.37512064743 0.7119002622591198 0.8701890043694603 0.7988952854091804 0.8780915273601396 0.9012082577502966 0.8987453560591224 0.98079362202704 0.92409104663822 1.0606254041841616 1.0 17.988803244971738 5.492098405510023 0.23838701361387768 1.030602831627128 0.39502492963344166 0.789343338175461 0.04349937374803389 6.545798296098552 0.2398829937771115 0.06062970717564436 1.3008731648383156 310526.3120862112 -5.492098405510023 -0.6355779019936865 RDETALQEEEELQLALALSQSEAEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RDETALQEEEELQLALALSQSEAEEK 26 1 O14964-2;O14964;I3L1P5 O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate 0 ;; 135.72 4.6801e-05 63540000.0 133454.0 110233.0 102183.0 87762.0 83539.0 126143.0 112585.0 111589.0 149741.0 120015.0 False True 132735.49849213325 113902.03876774429 116569.47820944223 98872.66020155938 94177.19647555395 117423.03131868219 107138.83343353402 119916.33781746052 112839.33697660043 112355.53994998908 1.1813881055728588 1.013764330788171 1.0375053892431902 0.8799980868372748 0.8382069679650282 1.045102283082336 0.9535696546981387 1.067293503024745 1.0043059472352382 1.0 16.777711736127124 4.900357295279631 1.691045936619372 0.9774194488570278 1.3190253852557896 0.44473585050774533 0.0682004991164107 1.5464875434377365 3.124901674184613 0.01922447232658261 0.9704361870108456 79498.1999665179 -4.900357295279631 0.3416059363987618 RDETALQEEEELQLALALSQSEAEEKER ddPTM_BT-474_Trastuzumab_2h_R1 1 RDETALQEEEELQLALALSQSEAEEKER 28 2 O14964-2;O14964;I3L1P5 O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate 0 114.21 0.0002407 26970000.0 18987.0 18438.0 19224.0 17784.0 14770.0 20921.0 20987.0 16627.0 24158.0 23686.0 False True 18884.77610165401 19051.697683993625 21930.57210199657 20035.4525765654 16650.871951351244 19474.780512736725 19971.778631874382 17867.79117019525 18204.584600615144 22174.339201395156 0.8516500054470992 0.8591776968395495 0.9890067930690243 0.9035422609258551 0.7509072446363413 0.8782575361484242 0.9006707460584803 0.8057868605649837 0.8209752919929066 1.0 14.436603492189665 4.463308016453565 24.992566975254324 0.8716813885300053 0.853531778339185 0.00681056248855616 0.07323441288203508 1654.409585255422 2993359.3813075093 0.01801356438671994 0.04938046805006363 29060.83016895113 -4.463308016453565 -0.018149610190820287 RDFNHINVELSLLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDFNHINVELSLLGK 15 1 A0A2R8Y5Y7;P32969;D6RAN4;E7ESE0 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 62.378 0.052962 271690000.0 334760.0 375000.0 381220.0 334550.0 308050.0 376090.0 414700.0 354360.0 533020.0 418580.0 False True 332957.68935533206 387481.6483077134 434892.4623763591 376903.9956978159 347278.34154460113 350091.78352063266 394639.3766921577 380804.1426036197 401664.36310207314 391865.866035632 0.8496726002796491 0.9888119427898322 1.1097992963153742 0.9618188986727014 0.8862173811102584 0.8933969857144923 1.0070777041250987 0.9717716586445261 1.0250047220636211 1.0 18.580000385101286 RDFS(ph)PVPWSQYFESMEDVEVENETGKDTFR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDFSPVPWSQYFESMEDVEVENETGKDTFR 30 2 Q9Y570;Q9Y570-4 Q9Y570 PPME1 Protein phosphatase methylesterase 1 1 RDFS(1)PVPWSQYFESMEDVEVENETGKDTFR;RDFS(1)PVPWSQYFESMEDVEVENETGKDTFR 228.95 2.1563e-35 68352000.0 47771.0 40681.0 44308.0 39313.0 39574.0 50360.0 49869.0 44488.0 61333.0 54283.0 True False 47513.80624385707 42035.0424928162 50546.18126796005 44290.02176914731 44613.514326524986 46878.73173468863 47456.645951919956 47807.92046548662 46218.30397009393 50818.612465985585 0.9349685860797455 0.827158406203072 0.9946391452893784 0.8715315043044897 0.8778971357469892 0.922471698062712 0.9338437955913123 0.9407561156355043 0.9094759130039063 1.0 15.633069364626481 -1.2038750105165745 0.23097976448581248 1.068990644683356 0.8931053542770556 0.28300594039492344 0.0428926045634862 23.020403488288334 1.1218095024674428 1.0528026510264867 0.08221825730997258 0.06253526426957576 1.2038750105165745 -0.1758852904063003 RDGPGLER ddPTM_BT-474_Trastuzumab_2h_R1 1 RDGPGLER 8 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 0 76.85 0.055694000000000014 89457000.0 75084.0 94583.0 81133.0 94645.0 87108.0 79025.0 83829.0 77988.0 100900.0 80796.0 False True 74679.75608661668 97731.13797836902 92555.82117932211 106627.04729582946 98200.68747043371 73562.18775484063 79773.87101212161 83807.86057503971 76034.54699073063 75639.53010706419 0.9873112112266034 1.2920643192790227 1.2236435240715233 1.4096735813258476 1.298272045469284 0.972536286921889 1.0546584689144085 1.1079902328374283 1.0052223603598187 1.0 16.20685278045857 2.7427811018553756 24.964074429407457 1.0429547391883738 1.2532375306954464 0.5015518711512199 0.10592199245183764 313.07068450496604 1851809.5378308338 0.033266880653930964 0.03416762316894348 553.0712735491272 -2.7427811018553756 0.21028279150707263 RDGWPAMCIHGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDGWPAMCIHGDK 13 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 53.403 0.094239 375610000.0 380920.0 434750.0 406410.0 379290.0 313870.0 476500.0 479400.0 395010.0 655980.0 471430.0 False True 378869.169044191 449220.39093807514 463628.9954209547 427308.07511051977 353839.4840467584 443560.6765603486 456209.59051415505 424487.6520201376 494322.5186816598 441342.9337884715 0.8584462105057217 1.01784883487764 1.050496020047677 0.9681996524619143 0.8017336564322289 1.005024987605081 1.0336850453185433 0.9618091047167135 1.1200417653420063 1.0 18.751540573780716 1.2622481018043439 24.938953095742182 1.0600208849825332 0.9665085680830063 0.19726039013294694 0.07857742544967598 325.1962005128958 342378.4515636183 0.05283004307466105 0.019269392032450122 18.291448633997245 -1.2622481018043439 -0.09351231689952688 RDGWS(ph)LDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDGWSLDR 8 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 RDGWS(1)LDR 60.0 0.050373 0.0 118250.0 113900.0 121400.0 135570.0 142590.0 152000.0 139990.0 135700.0 167650.0 151030.0 True False 117613.35513881002 117691.09264599602 138492.06477228375 152733.1480996949 160747.99130285537 141492.59776951312 133218.14888626756 145826.6230706377 126334.90389490564 141391.13609671182 0.8318297623576788 0.8323795670295419 0.9794960886201162 1.080217277518904 1.1369028903827707 1.0007175957107515 0.9421959011288097 1.031370332655733 0.8935136061746637 1.0 17.109332153918285 4.1887962849247895 4.139758237084246 1.0155538339127568 0.828923647503754 0.5560029740341845 0.06331063226395159 0.14630649986127925 5.15310936153166 0.016767181078553555 0.04183829208151849 15445.297750096921 -4.1887962849247895 -0.18663018640900275 RDHALLEEQSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RDHALLEEQSK 11 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ;;; 111.63 0.001061 2628180000.0 1947610.0 1497440.0 1449410.0 1189670.0 1085030.0 1603490.0 1509770.0 1329300.0 2044150.0 1567820.0 False True 1937124.2841598133 1547281.3851784042 1653474.329502438 1340282.1000203881 1223202.139023335 1492644.510509451 1436736.657218517 1428499.1160486282 1540396.6227066598 1467760.3853217687 1.3197823728803995 1.0541784617243246 1.126528789057048 0.9131477545134629 0.8333799925763627 1.0169538062455794 0.9788632201730595 0.973250900033977 1.049487803398487 1.0 20.485185034014957 5.154181104909864 1.0464214755516499 0.9696895241003383 1.8086401657628384 0.6812766632342844 0.06991312584155875 2.224375536349054 1.0957060110654822 0.021190981030674228 2.554748971819622 142620.22094347232 -5.154181104909864 0.8389506416625001 RDHHSTHYR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDHHSTHYR 9 1 P05060 P05060 CHGB Secretogranin-1;PE-11;GAWK peptide;CCB peptide 0 ;; 104.2 0.0052892 1715870000.0 969160.0 1223610.0 1207840.0 1223850.0 991710.0 1064320.0 1283300.0 869740.0 1418510.0 1311960.0 False True 963942.1502437997 1264337.1191621337 1377893.3732665165 1378789.284515832 1117998.3901743086 990746.0635397906 1221221.8763179306 934644.4152502312 1068937.21756017 1228229.5895745347 0.7848224455964413 1.0293980294027167 1.1218532633982756 1.1225826964431398 0.9102519591321596 0.806645656438704 0.9942944598338235 0.7609688149379279 0.8703073323045861 1.0 20.22814883425128 3.052561374457721 8.689166511103023 0.8703669797086483 1.0229733832869232 0.22384434569544476 0.11164858020015889 0.3727368126511268 56.549307341706786 0.03245849818851645 0.03879874921058647 1128.6554277430187 -3.052561374457721 0.15260640357827493 RDHRPPCAQEAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDHRPPCAQEAPR 13 2 Q13501;Q13501-2;E7EMC7;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 52.576 0.090957 44963000.0 33421.0 36429.0 30283.0 29883.0 26360.0 28697.0 30619.0 23946.0 39679.0 33113.0 False True 33241.06504942216 37641.51724320445 34546.58317544538 33666.18473602697 29716.78975203921 26713.243935471804 29137.84199406118 25732.972115324177 29900.642121359753 30999.699990534435 1.0723027984003752 1.2142542429345462 1.1144166939032947 1.0860164693950822 0.9586153982494362 0.8617258858514285 0.9399394833807501 0.830103908204969 0.9645461772368678 1.0 14.919966632975976 3.2562275910045186 2.240610193096757 0.9033649614767073 1.1401544453035855 0.7421769815977114 0.05699807999469678 0.12846337254562443 1.3228068754075628 0.016681949430821772 0.0229680404272282 1803.962855698313 -3.2562275910045186 0.23678948382687814 RDIEDIPYV ddPTM_BT-474_Trastuzumab_2h_R1 3 RDIEDIPYV 9 1 Q96EI5;Q96EI5-2;A2RQR6 Q96EI5 TCEAL4 Transcription elongation factor A protein-like 4 0 ;; 145.63 0.0019826 329377000.0 352520.0 480660.0 432060.0 450580.0 400830.0 428500.0 446080.0 387680.0 485360.0 459890.0 False True 350622.0714886537 496658.47753489483 492890.292467158 507623.38180099125 451873.32459445635 398878.8035805021 424501.4062089166 416610.6501991511 365749.5314907929 430539.4264683617 0.8143785445266748 1.153572581282267 1.1448203397079086 1.1790404097597647 1.0495515551295564 0.9264628952856512 0.9859756856439981 0.9676480818877242 0.8495146065738305 1.0 18.71578583230494 2.8613955828850757 4.617260340651919 0.9496681569797767 1.086893818859774 0.2580971301410494 0.102754718386702 0.3007146567742048 10.033189882523136 0.03161431264689362 0.03374044023680478 726.7676419767708 -2.8613955828850757 0.1372256618799974 RDINVSVGSQQPDTKDS(ph)PVCPHFTTNGNENSSIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEK 35 2 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 RDINVSVGSQQPDT(0.002)KDS(0.998)PVCPHFTTNGNENSSIEK 169.15 3.675e-15 875420000.0 345590.0 254860.0 201070.0 184000.0 192320.0 344470.0 306620.0 271480.0 512350.0 278380.0 True False 343729.3818386587 263342.8610338764 229378.90826822998 207294.38113405512 216810.812030052 320657.5996951591 291787.6191978524 291739.2161475073 386088.20763826335 260613.550066891 1.3189236774159845 1.010472636462244 0.8801495862719183 0.7954090686414785 0.8319245563954896 1.2303949645475332 1.1196179904036456 1.1194322631061484 1.4814586867765205 1.0 17.991552570261906 2.7261298260165283 24.741548878521574 1.185039973481099 0.9553705464756761 0.28159741533215643 0.17732378606792668 901.747073062745 1794783.772832623 0.058576978352464185 0.055585190669801235 532.267349066514 -2.7261298260165283 -0.22966942700542292 RDNEVDGQDYHFVVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDNEVDGQDYHFVVSR 16 1 Q92796-2;Q5JUW8;Q92796-3;Q92796 Q92796-2 DLG3 Disks large homolog 3 0 ; 143.46 9.1534e-07 832900000.0 740930.0 671240.0 590440.0 697090.0 658260.0 673830.0 609700.0 592700.0 804680.0 755790.0 False True 736940.9152050618 693581.8176268511 673568.8198035192 785341.522525751 742085.5091873043 627249.7181252035 580206.4817198178 636930.2836696174 606377.3961595746 707554.8351356261 1.0415318765559745 0.9802516825341224 0.9519669520375867 1.1099373271546007 1.0488028239465839 0.8865033308760734 0.8200162770544875 0.9001850486224559 0.857004102082551 1.0 19.43248243483737 2.7310177433319933 23.842565381581625 0.8817562790804426 1.0244237760450112 0.5634527221970491 0.05845424611017119 214.28786616524656 677348.8830211369 0.018562721907411355 0.017839191804031335 538.291774263716 -2.7310177433319933 0.1426674969645686 RDNYVPEVSALDQEIIEVDPDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 RDNYVPEVSALDQEIIEVDPDTK 23 1 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 RPS17 40S ribosomal protein S17 0 ;;; 211.13 8.639100000000002e-25 1345850000.0 622538.0 570400.0 534481.0 508105.0 493250.0 677442.0 650473.0 603266.0 865030.0 693293.0 False True 619186.3245784739 589385.4191859184 609731.2790078669 572431.040902821 556062.4637782 630612.0290669366 619007.1359418328 648284.7722426781 651854.9473081433 649046.4471820008 0.9539938586318866 0.9080789545107043 0.9394262639525558 0.8819569745557887 0.8567375512068292 0.9715976904347879 0.9537177787959686 0.9988264708286598 1.0043271173247095 1.0 19.307962198765107 2.263499348171177 1.7857761636948708 0.9972077291398168 0.9098400074651979 0.626507069198633 0.02958224268666561 0.23723110937445774 1.5213972056745089 0.015339992382180638 0.00991787592820913 183.44224138469647 -2.263499348171177 -0.08736772167461893 RDPFIGEHTEEILEEFGFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDPFIGEHTEEILEEFGFSR 20 1 D6RB81;Q9UHK6;Q9UHK6-5 D6RB81 AMACR Alpha-methylacyl-CoA racemase 0 ;; 172.0 4.5463e-12 120693000.0 57869.0 76920.0 71887.0 77563.0 83988.0 87843.0 87087.0 69524.0 90426.0 74231.0 False True 57557.439733850355 79480.23570087817 82008.06474699485 87382.46784728636 94683.37396412251 81770.62017017983 82874.26910535316 74712.2339157187 68141.7239463211 69493.51402764361 0.828241894789703 1.1437072482658162 1.1800822838570677 1.257419042193301 1.3624778555083386 1.1766654962598746 1.192546819151883 1.0750965030491786 0.980547967673864 1.0 16.084590713978294 1.5158436719480233 2.9346332626760683 0.9923230808859024 1.1747031340547127 0.22340903812120427 0.12810220076099393 0.35134537355016165 6.370293457224915 0.09726974888419819 0.03535717941627479 32.79772136300713 -1.5158436719480233 0.18238005316881034 RDPHLACVAYER ddPTM_BT-474_Trastuzumab_2h_R1 5 RDPHLACVAYER 12 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ;;;; 102.5 0.0015235 5278460000.0 1460780.0 1835500.0 1631000.0 1763430.0 1497360.0 1682060.0 1610680.0 1373840.0 2046420.0 1595830.0 False True 1452915.322787914 1896593.5079168186 1860630.6230938605 1986680.0571914488 1688039.9204519517 1565783.1513433347 1532765.2550048807 1476362.9170181658 1542107.2116230992 1493982.7631411979 0.972511436298678 1.269488212788416 1.2454163923429487 1.3297878035850441 1.129892500836312 1.0480597166001915 1.0259591293959376 0.9882061248913039 1.0322121845507217 1.0 20.51073207242176 2.827923618630218 2.8734497768798337 1.0133081922187224 1.2128157941434825 0.4892412721350804 0.0889537620526489 0.21740065901767466 3.4972752678801635 0.029073258284877015 0.030649335162439412 672.8583071893727 -2.827923618630218 0.19950760192476014 RDPLANK ddPTM_BT-474_Trastuzumab_2h_R1 3 RDPLANK 7 1 F5GWZ1;Q9BTZ2-3;Q9BTZ2-2;Q9BTZ2-5;Q9BTZ2-8;Q9BTZ2-4;Q9BTZ2;Q9BTZ2-7 F5GWZ1 DHRS4 Dehydrogenase/reductase SDR family member 4 0 ;; 98.997 0.017401 508280000.0 737430.0 718090.0 774110.0 641350.0 620970.0 731960.0 723990.0 625610.0 978770.0 691450.0 False True 733459.7588161743 741991.1915554279 883097.9593152608 722544.8442409035 700046.8487224504 681361.3280485042 688967.8377896186 672296.1949832108 737565.2483460598 647321.0690198723 1.1330694981498548 1.1462490981158675 1.3642348466308767 1.1162078276471514 1.0814522842310876 1.0525863603978984 1.0643371130076222 1.0385822849875008 1.1394117751532926 1.0 19.3041219359433 3.4902406030330893 21.44231744463767 1.0655130967544104 1.2131127112278877 0.5078255183048276 0.06679547053888665 74.81652574005311 122279.60024218833 0.017768842938341793 0.026134028374295716 3092.0079581974524 -3.4902406030330893 0.14759961447347725 RDPMYNEYLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDPMYNEYLDR 11 1 Q7L5D6;Q7L5D6-2 Q7L5D6 GET4 Golgi to ER traffic protein 4 homolog 0 ; 174.05 1.8378e-05 835120000.0 375170.0 453230.0 428780.0 449930.0 401280.0 374930.0 438780.0 354220.0 533310.0 416720.0 False True 373150.1264053059 468315.4865666796 489148.4969774284 506891.0918676377 452380.6294270974 349011.9715902862 417554.53509762406 380653.695092714 401882.8964878743 390124.57282805885 0.9564896763623394 1.2004255029920459 1.2538264212160066 1.2993057273811917 1.15957994172922 0.8946167350091726 1.070310778095115 0.9757234524688118 1.0301399206273474 1.0 18.57357534688459 2.873643931237356 6.556728867674757 0.998207524408324 1.1897579273804528 0.4762760257519455 0.09392836938359944 0.20932205969682305 10.300765017723101 0.028963333969716294 0.03080886240736432 747.5563437212696 -2.873643931237356 0.19155040297212877 RDPSEEIEILLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDPSEEIEILLR 12 1 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3;Q5SVM6;B7Z3B5;F2Z2J1;Q15349;Q15349-3;Q15349-2 E9PGT3 RPS6KA1;RPS6KA2 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2 0 ;; 236.28 7.2595e-16 132425000.0 98375.4 129062.0 113456.3 124976.8 114280.0 118997.2 123422.8 107561.6 129828.0 122906.5 False True 97845.75777693433 133357.7506503736 129429.96086016204 140798.8500658399 128832.88060937161 110771.20365327816 117452.36764311734 115588.39277873783 97833.62900607106 115062.50194445133 0.8503705040602305 1.1590027019815254 1.1248665609813255 1.2236727664223164 1.1196773790958257 0.9627046325374979 1.0207701523804842 1.0045704797427435 0.8502650937774858 1.0 16.812058220392224 2.7387785958658246 24.997863177495645 0.975417358044935 1.1077951016330172 0.28057581025123657 0.10103746309688465 26.094984288742296 2992730.084738958 0.03165691665211315 0.03168407920124703 547.9975235408759 -2.7387785958658246 0.1323777435880822 RDPSSNDINGGMEPTPSTVST(ph)PSPSADLLGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 RDPSSNDINGGMEPTPST(0.001)VS(0.075)T(0.467)PS(0.383)PS(0.075)ADLLGLR 91.532 7.2137e-05 105990000.0 11093.0 17300.0 20755.0 19015.0 16572.0 16779.0 15953.0 17265.0 20181.0 19113.0 True False 11033.276520548168 17875.820041929153 23677.12359430602 21422.297050348127 18682.345970060465 15619.107223517483 15181.292443621858 18553.401969893606 15207.662961545435 17893.19197653744 0.616618685755768 0.9990291316031781 1.3232476142519902 1.1972317224583655 1.0441035894857558 0.8729078212539235 0.8484395888407402 1.0368972732322925 0.8499133626625466 1.0 14.12712315307388 2.824121712459654 6.808824862659569 0.9274270273857947 1.0598986926544716 0.08504285167256398 0.17916805527922494 0.6298315357038358 42.67345036549031 0.0578736669964019 0.061434331753694484 666.9936701965611 -2.824121712459654 0.13247166526867682 RDPSSNDINGGMEPTPSTVSTPS(ph)PSADLLGLR ddPTM_BT-474_Trastuzumab_2h_R1 6 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 RDPSSNDINGGMEPTPSTVS(0.034)T(0.124)PS(0.841)PS(0.001)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.134)T(0.068)PS(0.796)PS(0.002)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.018)T(0.263)PS(0.69)PS(0.029)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.005)T(0.015)PS(0.97)PS(0.01)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.001)T(0.098)PS(0.825)PS(0.076)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.012)T(0.039)PS(0.949)PSADLLGLR 232.73 5.1685e-38 3287920000.0 543819.0 615883.0 586292.0 632542.0 590268.0 688726.0 593065.0 561288.0 607635.0 620936.0 True False 540891.1389279704 636382.2933458642 668836.8174585808 712621.7523440082 665435.1310074605 641115.9927066162 564376.1802216889 603174.1607227124 457891.4961418492 581307.3328699446 0.9304736209976273 1.0947432749626804 1.1505735084339959 1.2258949991663746 1.14472172185094 1.102886470640914 0.9708740081349642 1.03761663859427 0.7876926201519169 1.0 19.148941581920045 1.910581415121316 1.448460313529859 0.9201681467080487 1.1171400262157603 0.41040385989298156 0.09294936390751078 0.4040288371341542 1.5793034464870555 0.06783285667700144 0.030041109427142557 81.39194280825477 -1.910581415121316 0.19697187950771156 RDPTEEIEILLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDPTEEIEILLR 12 1 B4DG22;B1AXG1;B7ZB17;P51812;A0A2R8Y603 B4DG22 RPS6KA3 Ribosomal protein S6 kinase alpha-3 0 190.37 1.0802e-05 39339000.0 26407.0 28917.0 29998.0 33462.0 30438.0 31565.0 27570.0 29169.0 37920.0 32071.0 False True 26264.82764609351 29879.484864304377 34221.457652709774 37698.28576906384 34314.0988798395 29382.98584601762 26236.33377237227 31345.738897180803 28575.124101967333 30024.2013226355 0.8747885535357183 0.995180006396306 1.139795769585049 1.2555966223368873 1.1428813213415874 0.9786433793949262 0.8738395233378772 1.0440157445103788 0.951736360774543 1.0 14.873838248687738 2.6760598844038217 8.358383952916087 0.969986179746889 1.0896592173600976 0.2299292242223595 0.10197942969976116 0.5754488533181981 72.05594587541935 0.036118707596612024 0.034066662090430896 474.30738249145554 -2.6760598844038217 0.11967303761320858 RDPYGFGDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDPYGFGDSR 10 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 ; 137.89 0.0001268 693560000.0 667340.0 868020.0 825120.0 811670.0 736800.0 760680.0 752480.0 735900.0 851500.0 766320.0 False True 663747.1155884436 896911.5209708291 941289.723928393 914427.3387775997 830627.1126442517 708095.9820481134 716079.66764725 790816.5948244837 641659.234515432 717412.8015204406 0.9251955278491528 1.250202838686416 1.312061510379354 1.2746180955227153 1.1578091593624642 0.987013307467358 0.9981417478606943 1.1023173731336764 0.8944072828858628 1.0 19.452443963425136 2.844834083138583 4.3052050290572135 1.0112461214087003 1.2045025078295188 0.4190592001712983 0.10949393879247177 0.23529320832341463 7.382082352238633 0.03469420340460022 0.03692290112126251 699.5746810469593 -2.844834083138583 0.19325638642081855 RDQALTEEHAR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDQALTEEHAR 11 1 P12814-3;P12814;P12814-2;P12814-4;H9KV75;H0YJ11 P12814-3 ACTN1 Alpha-actinin-1 0 ;;; 204.32 2.1812e-08 2670100000.0 1625070.0 1850030.0 1706280.0 1560410.0 1512420.0 1684900.0 1625320.0 1534240.0 1867650.0 1666840.0 False True 1616320.8036822486 1911607.1301832472 1946509.3927483715 1757957.7460075577 1705017.7221843388 1568426.8288279762 1546697.0622746502 1648732.7795128608 1407392.6827278307 1560460.8441464796 1.035797091445971 1.2250272971308247 1.2473939349712089 1.126563189715345 1.0926372991543578 1.0051048923857193 0.9911796685424954 1.0565678630755153 0.9019083612428788 1.0 20.5735407262196 3.015645490174469 1.848124552869775 0.9975926258246722 1.1739949947478718 0.6058604804362423 0.06405806153900487 0.23359875399270644 1.6179233689167376 0.021946491306881557 0.026179162898451763 1036.681838316896 -3.015645490174469 0.1764023689231996 RDQDNMQAELNR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDQDNMQAELNR 12 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;; 239.19 5.8782e-16 1281820000.0 343240.0 386563.0 346049.0 345759.0 372650.0 357462.0 372784.0 340935.0 427806.0 391251.0 False True 341392.03397754946 399429.5157727314 394769.69128817145 389532.05394853104 420104.7686304024 332751.4933150375 354751.0137468268 366377.3009328509 322378.9436067043 366281.0262131665 0.9320494635145741 1.0905001547644275 1.0777781622202436 1.0634786572915 1.14694657534871 0.9084595419949064 0.9685214039461888 1.0002628438624839 0.8801409861156383 1.0 18.482591444123344 2.7272875380899575 24.996775231022593 0.9569774193841711 1.0646675584516305 0.4492637384989038 0.061084928261062744 696.0755453129082 1543466.1673044264 0.019251128618493957 0.018311903387603735 533.6881232654652 -2.7272875380899575 0.10769013906745939 RDRS(ph)PIRGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDRSPIRGSPR 11 3 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 RDRS(1)PIRGS(1)PR 79.652 0.03813 392820000.0 210890.0 205530.0 182130.0 206380.0 200570.0 210240.0 249790.0 213520.0 194050.0 208490.0 True False 209754.59167208147 212370.94180449148 207772.32089766083 232507.6868393819 226111.4006284711 195706.60365172656 237706.70340953488 229453.94663259084 146228.97763678158 195183.9897027308 1.074650600141651 1.088055132636323 1.0644946914657412 1.1912231489554848 1.1584526014292638 1.0026775451705425 1.2178596398791062 1.1755777048212503 0.7491853089973789 1.0 17.574475192687135 1.249316749940513 24.99962273866046 0.8745926292344787 1.1254385283246133 0.579762857787941 0.08407650002242574 120.17903570294713 279326.814473303 0.05548134287522762 0.01980638040778047 17.75483946792991 -1.249316749940513 0.25084589909013466 RDS(ph)ASYR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDSASYR 7 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 RDS(0.989)AS(0.01)Y(0.001)R;RDS(0.99)AS(0.01)YR;RDS(1)ASYR;RDS(1)ASYR 144.47 0.0014405 869133000.0 163124.0 161893.0 142794.0 187851.0 184743.0 153732.0 175841.0 162633.0 200808.0 193245.0 True False 162245.75850878016 167281.510638615 162898.15401230232 211632.91733920292 208268.92599244966 143104.86868620233 167334.89905214755 174769.50029364057 151321.55908934213 180911.93865463175 0.8968217339073122 0.9246571115351442 0.9004278834426815 1.169811781980949 1.1512171476424422 0.7910194857808436 0.9249522187233684 0.9660473575891675 0.8364376625150269 1.0 17.46492809118262 2.728901545852288 24.999646186460403 0.9087731709647416 1.006872434235799 0.20133542733302356 0.10418655702405823 1341.4754761922159 3472004.100783132 0.03600707196878292 0.034340737142098704 535.6752066854688 -2.728901545852288 0.09809926327105745 RDS(ph)DGVDGFEAEGK ddPTM_BT-474_Trastuzumab_2h_R1 5 RDSDGVDGFEAEGK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK 263.49 1.3491e-24 5417320000.0 6199790.0 4854620.0 4280700.0 4069210.0 4229580.0 5639430.0 5416220.0 5398220.0 7851720.0 5397680.0 True False 6166411.019501421 5016203.092020242 4883385.351488594 4584371.568774498 4768191.942315246 5249589.477890299 5154216.746630328 5801062.588005739 5916768.813657679 5053195.44121366 1.2202993316285413 0.9926794145162662 0.9663955032611441 0.9072222956952243 0.9435993516945858 1.0388653158108347 1.0199915690164567 1.1479988564646648 1.170896491633937 1.0 22.268764549125077 1.8346686963936663 4.979000413979359 1.1198120932843483 1.003091198694376 0.17744104582941744 0.08972882315618509 0.31510576359692494 11.67745637571064 0.042544810957377735 0.024378009681604106 68.33901209857001 -1.8346686963936663 -0.11672089458997226 RDS(ph)DGVDGFEAEGKK ddPTM_BT-474_Trastuzumab_2h_R1 3 RDSDGVDGFEAEGKK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 RDS(1)DGVDGFEAEGKK;RDS(1)DGVDGFEAEGKK;RDS(1)DGVDGFEAEGKK 218.88 1.4795e-12 1742900000.0 2162130.0 1696660.0 1384890.0 1353110.0 1426590.0 2071610.0 2039000.0 2044180.0 3406120.0 2091210.0 True False 2150489.332315225 1753132.3024473733 1579870.4743203288 1524413.5872625064 1608257.7804386048 1928404.4767454 1940365.7802635853 2196727.0917357136 2566727.3656696454 1957747.1874250418 1.0984509880173499 0.8954845210393118 0.8069839070479159 0.7786570181554012 0.8214838926949968 0.9850120021276929 0.9911217304904839 1.1220688278066149 1.3110617050843907 1.0 20.900763044686187 2.0056093924068037 1.6417517205579493 1.1643236317581875 0.8773311573697414 0.498608533712392 0.11130715126248172 0.297318380463949 1.4969226792025032 0.0719336499826893 0.03541075598430774 101.29998764850329 -2.0056093924068037 -0.2869924743884461 RDS(ph)DSFLNIFPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSDSFLNIFPEK 13 1 A0A0A6YYJ5;O94854-2;O94854 A0A0A6YYJ5 MACF1;KIAA0754 Uncharacterized protein KIAA0754 1 RDS(0.647)DS(0.353)FLNIFPEK;RDS(0.912)DS(0.088)FLNIFPEK 131.45 7.9824e-05 116807000.0 329110.0 347870.0 321700.0 307880.0 285780.0 365860.0 382170.0 343870.0 442130.0 378180.0 True False 327338.10832755826 359448.6426581441 366992.56373347336 346857.57643235225 322172.3890492326 340568.9593418028 363682.97706882533 369531.32553647907 333172.98573847074 354044.22862381244 0.9245684066082303 1.0152647991335402 1.0365726484512734 0.9797012587399178 0.9099778022128273 0.9619390228887824 1.027224701508281 1.0437433960521423 0.9410490520733263 1.0 18.433570073249243 2.2422051691044143 24.990724543308428 1.01135873594069 0.9738903769137793 0.10042204553177314 0.04325269356913074 195.34904229786738 1339517.3590668137 0.016300921692494783 0.013148176258984002 174.66471078842036 -2.2422051691044143 -0.03746835902691059 RDS(ph)DTYR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSDTYR 7 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 RDS(0.978)DT(0.022)YR;RDS(0.999)DT(0.001)YR 107.51 0.004569600000000001 276965000.0 164183.0 169448.0 124686.0 147044.0 147664.0 128616.0 155501.0 150237.0 198112.0 150462.0 True False 163299.05697044605 175087.97424652107 142240.70500985958 165659.7553232389 166468.13512690118 119725.07864949795 147978.82255849315 161448.44782802797 149289.95216479298 140859.38634300095 1.1593054691634335 1.2429982750327442 1.0098063657859124 1.176064724006731 1.1818036372921674 0.8499616657278365 1.0505428598003115 1.1461674796373984 1.0598509339041355 1.0 17.103896177157875 4.24316452170624 24.999787248412826 1.069055199000624 1.2011518918122146 0.25822031329977124 0.09503697725268609 164.53637562603987 893422.5216119436 0.02381809815265034 0.060892451222601264 17505.097002707396 -4.24316452170624 0.13209669281159053 RDS(ph)FDDR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDSFDDR 7 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 RDS(1)FDDR;RDS(1)FDDR;RDS(1)FDDR 114.4 0.0062637 2520130000.0 2549010.0 2415530.0 2243830.0 2281150.0 2145230.0 2388180.0 2094650.0 2162760.0 2394180.0 2215390.0 True False 2535286.4133816375 2495929.4558312776 2559741.760280015 2569943.3561084233 2418412.324725611 2223090.737771022 1993323.77715994 2324156.1334727556 1804166.4193683572 2074001.9135091954 1.222412764842609 1.2034364286618155 1.2342041459108162 1.2391229436042799 1.1660607972312214 1.071884612685612 0.9611002594434696 1.1206142667150683 0.8698962173644871 1.0 20.98398579453074 2.7332501258404993 2.0559831026859015 1.0084142072984543 1.2238482402551247 0.7605840179388312 0.05994351516904282 0.165223315070135 1.378578961912768 0.02147149919969924 0.021144016149283545 541.065852546416 -2.7332501258404993 0.2154340329566704 RDS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_BT-474_Trastuzumab_2h_R1 13 RDSFDDRGPSLNPVLDYDHGSR 22 2 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(0.994)FDDRGPS(0.006)LNPVLDYDHGSR;RDS(0.997)FDDRGPS(0.003)LNPVLDYDHGSR;RDS(0.998)FDDRGPS(0.002)LNPVLDYDHGSR;RDS(0.979)FDDRGPS(0.021)LNPVLDYDHGSR;RDS(0.976)FDDRGPS(0.024)LNPVLDYDHGSR;RDS(0.995)FDDRGPS(0.005)LNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(0.999)FDDRGPS(0.001)LNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(0.863)FDDRGPS(0.137)LNPVLDYDHGSR 293.8 9.5114e-56 23309676000.0 2893468.4 4279924.0 4217360.0 4672623.0 4521643.0 4679586.0 4279427.0 4057623.0 4588007.0 4531674.0 True False 2877890.2876289603 4422378.683071302 4811127.630049742 5264176.592705169 5097447.43417222 4356097.234380549 4072414.767011308 4360423.432452102 3457354.150994061 4242458.6855587 0.6783543461307658 1.0424093693888048 1.134042305804129 1.240831551436055 1.2015314259921719 1.026786011896515 0.9599185446104118 1.02780575030582 0.8149411478685392 1.0 22.016469179727398 2.3982759336906656 4.54105010397279 0.9621199878924764 1.0762425372086584 0.09432356222065164 0.1527356039224792 0.5261987102899678 20.275167261605983 0.05688325796013702 0.047299703938943956 250.19344879134655 -2.3982759336906656 0.11412254931618193 RDS(ph)FDNCSLGESSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSFDNCSLGESSK 14 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 RDS(1)FDNCSLGESSK;RDS(0.999)FDNCS(0.001)LGESSK 216.68 3.6982e-12 819950000.0 1065200.0 467650.0 419340.0 568110.0 364470.0 593920.0 461840.0 621640.0 908750.0 888230.0 True False 1059465.0815548445 483215.4475496058 478379.42703137925 640032.6677503696 410883.09411706094 552863.7083372971 439499.0347998699 668029.9334239591 684800.7391261285 831542.4009480387 1.2740962822183834 0.5811074059467004 0.5752916826441808 0.7696933638268723 0.49412163907530693 0.6648653246148111 0.5285347257082724 0.8033624414850529 0.8235307524251193 1.0 19.665430303887835 1.0770179110071276 1.7701133423250328 0.9916480759466438 0.6849537282181807 0.15138288112116238 0.2113985854636704 0.571245099815464 3.5640477234453245 0.1896734590115675 0.05470367050049186 11.94037347481013 -1.0770179110071276 -0.30669434772846316 RDS(ph)FIGTPYWMAPEVVMCETSK ddPTM_BT-474_Trastuzumab_2h_R1 9 RDSFIGTPYWMAPEVVMCETSK 22 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 RDS(0.989)FIGT(0.011)PYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(0.967)FIGT(0.033)PYWMAPEVVMCETSK;RDS(0.984)FIGT(0.016)PYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(0.999)FIGT(0.001)PYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(0.83)FIGT(0.153)PY(0.017)WMAPEVVMCETSK 313.9 1.691499999999999e-67 2835080000.0 3379168.0 2196414.0 1948639.0 2254718.0 1918644.0 2727084.0 2311798.0 2451704.0 4474130.0 2921137.0 True False 3360974.9349488565 2269520.3122297013 2222990.43332618 2540165.0676185577 2162971.9407060524 2538567.101945227 2199967.498814025 2634662.6019806573 3371540.611770441 2734707.5357487937 1.2290070843091394 0.8298950738102534 0.8128805015771093 0.9288616915750122 0.7909335504550786 0.9282773637620956 0.804461709362149 0.9634165875288953 1.2328706334029518 1.0 21.38295512106737 1.4278815822757909 6.301790220095347 1.11477397591315 0.8945912096981535 0.29033200183362207 0.13081301782027593 0.21616546208773227 16.29114558422237 0.08012770075703063 0.03085280129665239 26.784379039187883 -1.4278815822757909 -0.22018276621499655 RDS(ph)FSGVK ddPTM_BT-474_Trastuzumab_2h_R1 3 RDSFSGVK 8 1 Q14865;Q14865-2;Q14865-3 Q14865 ARID5B AT-rich interactive domain-containing protein 5B 1 RDS(1)FSGVK;RDS(1)FSGVK;RDS(1)FSGVK 158.06 0.0002249 1426230000.0 1378480.0 1251990.0 1222850.0 1116290.0 1049670.0 1516330.0 1499240.0 1323530.0 1900170.0 1404590.0 True False 1371058.4168435258 1293661.7303060615 1395016.6507972577 1257612.1995442086 1183339.2526184751 1411509.6761568792 1426716.0335470238 1422298.5293491625 1431898.564473502 1314947.8636699999 1.0426713139918127 0.9838121845344278 1.0608912256823528 0.956397005759781 0.8999134378725807 1.0734339475767325 1.0849981759467486 1.0816387239715715 1.0889394203638574 1.0 20.326574168601557 2.5864632831606387 24.995151627936867 1.0732738174731895 0.9902739712155263 0.3885342611101885 0.04786303529751165 25.91418928344061 5903.309254866828 0.015556285876614317 0.01466660558204896 385.88978568577954 -2.5864632831606387 -0.08299984625766321 RDS(ph)GVGASLTRPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSGVGASLTRPNR 14 2 H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8 H3BRG5;Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 1 RDS(0.874)GVGAS(0.122)LT(0.004)RPNR 71.263 0.033004 121310000.0 73420.0 64125.0 72168.0 65121.0 74397.0 84058.0 82435.0 85211.0 92864.0 75444.0 True False 73024.7148777289 66259.3618606189 82328.6271044989 73365.31192299347 83871.01696443318 78247.2683112481 78447.3041177188 91569.87751269065 69978.9115138474 70629.09932914194 1.0339182514196172 0.9381312021528204 1.165647415675449 1.0387405845443445 1.1874852965855045 1.1078616187161665 1.1106938197263834 1.2964893844385814 0.9907943351752997 1.0 16.107975078746136 4.235344412034679 24.999459748821515 1.1311496415844338 0.9860247117659333 0.21471893937727637 0.09093331901171361 92.11617203888513 716040.1120429715 0.022078706811954566 0.051088123167662994 17192.712941652608 -4.235344412034679 -0.14512492981850045 RDS(ph)ICSSVSLESSAAETQEEMLQVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSICSSVSLESSAAETQEEMLQVLK 26 1 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 1 RDS(0.164)ICS(0.164)S(0.164)VS(0.164)LES(0.164)S(0.164)AAET(0.017)QEEMLQVLK 78.48899999999998 0.012611 18760000.0 3810.2 4462.0 4507.2 3719.1 4527.0 3233.0 4748.1 5085.1 6787.9 4211.6 True False 3789.6863065530174 4610.514972664042 5141.7745827153 4189.937678672086 5103.486616368792 3009.5103196633913 4518.416263496586 5464.575983614594 5115.112998200003 3942.812082267833 0.9611633086944533 1.1693468713355872 1.3040881673868276 1.0626774980008966 1.294377340305136 0.7632903260082272 1.1459882361164107 1.385959023558503 1.2973260940343583 1.0 11.945009236690163 1.9824282801711497 24.515624442283983 1.2694779751633938 1.1001916505437825 0.09241486813306554 0.1747182708429342 1042.7062209745118 1454756.6484410816 0.06938697930521374 0.04590420631789467 96.03472125834621 -1.9824282801711497 -0.16928632461961124 RDS(ph)IVAELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSIVAELDR 10 1 O14579;M0QXB4;O14579-3 O14579 COPE Coatomer subunit epsilon 1 RDS(1)IVAELDR;RDS(1)IVAELDR 148.18 1.5665e-05 1115880000.0 535150.0 517840.0 514150.0 507580.0 534790.0 548000.0 562840.0 516310.0 711240.0 535270.0 True False 532268.8118607546 535075.9913591099 586537.850928086 571839.5759566503 602892.3365513294 510118.04985324433 535613.2789424019 554839.6739690563 535964.4321277225 501108.6103322968 1.0621825306649486 1.0677844689283795 1.1704804883299431 1.1411489728293636 1.203117097013235 1.0179790155969843 1.0688566667956956 1.1072243871465892 1.0695574194430864 1.0 18.93476380162155 2.722248315227737 24.9946199684802 1.064566583650472 1.1285308179038942 0.36760813430688066 0.04876122646442531 1127.5651512018637 1727716.9077780023 0.016618457447249792 0.015701751954720792 527.5314002250324 -2.722248315227737 0.06396423425342213 RDS(ph)LDSSTEASGSDVVLGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSLDSSTEASGSDVVLGGR 20 1 Q9Y2I9 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 RDS(1)LDSSTEASGSDVVLGGR;RDS(0.941)LDS(0.045)S(0.01)T(0.004)EASGSDVVLGGR 138.25 1.3045e-06 947810000.0 204100.0 225850.0 169383.0 160171.0 181234.0 214559.0 178522.0 156901.0 200001.0 170938.0 True False 203001.14827764154 233367.28072079198 193230.654096571 180448.63217729723 204313.07564192222 199727.0413475588 169886.20883973315 168609.74934713452 150713.4334260962 160028.59049261519 1.2685305022855238 1.4582849227279868 1.2074758235497174 1.1276024591719713 1.2767285833924196 1.2480709898946187 1.0615991074893136 1.0536226609764168 0.9417906697931652 1.0 17.287970152531287 2.2092131590563002 0.6740567460336538 0.9536277497521292 1.307775561539653 0.6880365584123702 0.08274296322907994 0.4268711519943607 0.37754178867964755 0.07430717070701942 0.048762378147789526 161.88744135458253 -2.2092131590563002 0.35414781178752375 RDS(ph)LEEGELR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSLEEGELR 10 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;A0A087X1I0;A0A087WYI9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2;E9PFJ2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 RDS(1)LEEGELR;RDS(1)LEEGELR 190.24 5.656e-07 1275180000.0 1076380.0 1068390.0 873800.0 955520.0 963090.0 1158310.0 1018500.0 1037100.0 1203840.0 1140610.0 True False 1070584.8896770598 1103950.715294608 996823.4447942461 1076488.7340283268 1085733.8028183405 1078238.7560684523 969231.2639521642 1114493.668287092 907169.762629546 1067815.2932746497 1.0025937036300694 1.033840517407409 0.9335167337202166 1.0081226039824533 1.0167805327911539 1.009761484836799 0.9076768894926016 1.0437139038056802 0.8495568178720733 1.0 20.026230685898028 RDS(ph)LGAYASQDANEQGQDLGK ddPTM_BT-474_Trastuzumab_2h_R1 5 RDSLGAYASQDANEQGQDLGK 21 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RDS(1)LGAYASQDANEQGQDLGK;RDS(1)LGAYASQDANEQGQDLGK;RDS(1)LGAYASQDANEQGQDLGK;RDS(1)LGAYASQDANEQGQDLGK;RDS(1)LGAYASQDANEQGQDLGK 396.77 8.694299999999995e-132 2919610000.0 1754560.0 1206080.0 1259490.0 1132630.0 1355970.0 2042440.0 1846920.0 1796220.0 2293160.0 1949990.0 True False 1745113.6439099426 1246223.6437092433 1436815.244316671 1276020.84186883 1528644.7420361373 1901250.9301866048 1757577.4236804403 1930263.057420347 1728041.4447697091 1825539.9687295682 0.9559438159682716 0.6826602895890121 0.7870631533291387 0.6989826920945695 0.8373658031162985 1.041473187524744 0.9627712642761668 1.0573655414204148 0.9465919532686483 1.0 20.799891825090505 2.867947535370196 4.166257496842576 1.0057948118777775 0.7738595710452563 0.6598173547497287 0.07565495395379673 0.12716700451572877 3.6981095260784445 0.022188088303703307 0.023749103208981173 737.8150935280826 -2.867947535370196 -0.23193524083252126 RDS(ph)LGAYASQDANEQGQDLGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDSLGAYASQDANEQGQDLGKR 22 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RDS(1)LGAYASQDANEQGQDLGKR;RDS(1)LGAYASQDANEQGQDLGKR;RDS(1)LGAYASQDANEQGQDLGKR;RDS(1)LGAYASQDANEQGQDLGKR 240.86 6.3316e-31 2894330000.0 1145340.0 869414.0 850960.0 923876.0 1032610.0 1495030.0 1329160.0 1216220.0 1903490.0 1431710.0 True False 1139173.6166992376 898351.9194181376 970767.7713230847 1040838.6068728598 1164106.7627410167 1391682.0950220725 1264863.4529157174 1306980.5122400238 1434400.3949592256 1340337.0420514003 0.8499157905505023 0.6702432979418373 0.7242713891106928 0.7765499081334386 0.8685179370700213 1.0383075684397174 0.9436905891818301 0.9751133268984912 1.0701788803537506 1.0 20.35416439668988 3.0505551680140037 2.3379178565283376 0.9968555262253677 0.7426952749178614 0.8269370585608655 0.05381747073207221 0.11349846909717883 1.2574674215406931 0.016972162670704664 0.02044324390225544 1123.4536718593686 -3.0505551680140037 -0.2541602513075063 RDS(ph)LGTYSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDSLGTYSSR 10 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RDS(1)LGTYSSR;RDS(1)LGTYSSR;RDS(1)LGTYSSR;RDS(1)LGTYSSR 167.03 3.2875e-06 3067230000.0 444512.0 456503.0 406967.0 472224.0 520032.0 482630.0 480535.0 433671.0 607205.0 461672.0 True False 442118.79678192607 471697.42639310897 464264.416179423 532007.5099817818 586254.9927288481 449266.9240888162 457289.68622803444 466033.7321567169 457567.4638801448 432207.6977027153 1.022931334013463 1.0913674811908507 1.0741697074047885 1.2309070680821415 1.356419600680252 1.0394699735260957 1.0580322577747592 1.0782633780790922 1.0586749526031642 1.0 18.721365241540845 RDS(ph)LSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSLSGK 7 1 Q92845-2;Q92845-3;Q92845 Q92845-2 KIFAP3 Kinesin-associated protein 3 1 RDS(1)LSGK 79.48899999999998 0.020409 0.0 268060.0 249410.0 240390.0 206890.0 237010.0 178520.0 266140.0 273350.0 362380.0 290140.0 True False 266616.79474426596 257711.46107847098 274234.82249266334 233082.25278709037 267191.8186316694 166179.33259087813 253265.79144646905 293748.7650431746 273076.30464322015 271623.0167986487 0.9815692274042674 0.9487835902710329 1.009615553662563 0.858109358824594 0.9836862198969534 0.6118013655450456 0.9324165324112144 1.0814575602071583 1.0053503854780053 1.0 18.05124621033136 1.898506387013966 6.622017150614137 1.0326963968415277 0.8975627992105548 0.22319776639023603 0.10826881345945574 0.36840247098641116 20.520270976572657 0.04830097878264053 0.029670245363358605 79.16010963334944 -1.898506387013966 -0.13513359763097288 RDS(ph)LTGSSDLYK ddPTM_BT-474_Trastuzumab_2h_R1 7 RDSLTGSSDLYK 12 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;Q14671-4;E9PR38;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 RDS(1)LTGSSDLYK;RDS(1)LTGSSDLYK;RDS(0.997)LT(0.003)GSSDLYK;RDS(0.982)LT(0.015)GS(0.002)S(0.001)DLYK;RDS(0.981)LT(0.019)GSSDLYK;RDS(0.998)LT(0.002)GSSDLYK;RDS(0.997)LT(0.003)GSSDLYK 237.06 2.6316e-16 7034060000.0 8327990.0 6398460.0 6088280.0 5468030.0 5617200.0 8022400.0 8102040.0 7222570.0 10919850.0 8033850.0 True False 8283153.02716667 6611428.873149245 6945456.903721587 6160282.037350247 6332517.124247137 7467830.370698298 7710113.372401557 7761554.848867335 8228799.285993355 7521122.814874981 1.101318676884863 0.8790481203249895 0.9234601102358195 0.8190641462690496 0.8419643290125425 0.9929142967761033 1.025127971205682 1.0319675718520163 1.094091864810233 1.0 22.84251662464883 2.5212408082235247 4.630759867466212 1.0366398051169672 0.9064857284560707 0.3844965174585989 0.07465611943725545 0.21423422578227969 10.33521727383488 0.025480068958066867 0.023154625117298374 332.0785378944844 -2.5212408082235247 -0.1301540766608965 RDS(ph)LTGSSDLYKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSLTGSSDLYKR 13 2 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;Q14671-4;E9PR38;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 RDS(1)LTGSSDLYKR 108.18 0.00064507 389940000.0 176910.0 192920.0 175420.0 179340.0 181680.0 202500.0 227950.0 205550.0 337810.0 244790.0 True False 175957.53621654864 199341.22557739742 200117.61122202655 202044.42561185537 204815.8710982732 188501.6516337263 216923.18764643668 220889.18476175106 254561.25192208824 229167.2926247369 0.7678126062460422 0.8698502447459643 0.8732381001233042 0.8816459944949674 0.8937395417663753 0.8225504149163166 0.9465713242144461 0.9638774461740433 1.1108097015350882 1.0 17.806041627889204 1.7400646269050046 1.6947792648523319 1.0496838400622033 0.8571788091204252 0.7339235705235934 0.04740849836033711 0.1706936348491073 0.9682816154877003 0.03371705792463916 0.013439931386863259 54.96226565418315 -1.7400646269050046 -0.19250503094177807 RDS(ph)PLQGSGQQNSQAGQR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDSPLQGSGQQNSQAGQR 18 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6;A0A0D9SG62;G5E948;E7ENQ1;G3XAA2;C9J840;E7EX83;O95819-4;O95819-5 O95819-3 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR 206.85 4.947e-16 674820000.0 142477.0 142491.0 144896.0 145047.0 151431.0 162075.0 171849.0 159481.0 164333.0 181577.0 True False 141709.9196626828 147233.7267973716 165296.09734139047 163409.93532799624 170714.84024814304 150871.1367335119 163536.00734306875 171382.28204810902 123835.33409938272 169988.6004041092 0.8336436639033425 0.8661388260586707 0.9723951897270561 0.9612993750141263 1.0042722855668402 0.8875367899662102 0.9620410248351897 1.008198677091797 0.7284919918452908 1.0 17.37507847555335 4.3625186831884655 4.833433065714503 0.9461334214620332 0.8413184419640497 0.17553473508940753 0.07891205260164333 0.30163588996852914 11.12546690062253 0.018457296782561212 0.054234510423327935 23041.920994181517 -4.3625186831884655 -0.10481497949798346 RDS(ph)PPPPAR ddPTM_BT-474_Trastuzumab_2h_R1 7 RDSPPPPAR 9 1 O96013;O96013-4;O96013-2;M0R2X4 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR 128.36 0.00025693 8715252000.0 2779446.0 3031969.0 2767291.0 2803771.0 2666326.0 3081006.0 3055221.0 2889801.0 3606747.0 3131752.0 True False 2764481.771561484 3132886.255301033 3156901.5190754365 3158728.1211228822 3005866.811547637 2868023.307128 2907428.288152379 3105452.6247321423 2717912.52978371 2931880.90613222 0.9429038423011624 1.0685584972938011 1.0767495748113682 1.0773725885373435 1.0252349627369484 0.978219579495655 0.9916597505960435 1.0592014901549671 0.9270200996565102 1.0 21.48339507128771 2.997244005909756 24.366648548536347 1.000362529536638 1.046541824120505 0.18758901283095097 0.047429869010738486 146.36282183315902 1294067.9499532972 0.013890712868204792 0.01631697036881623 993.6741818592826 -2.997244005909756 0.046179294583866826 RDS(ph)PTYDPYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSPTYDPYK 10 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 RDS(0.999)PT(0.001)YDPYK 107.14 0.0014231 256440000.0 787340.0 634400.0 551880.0 482500.0 476480.0 704860.0 707800.0 683360.0 970360.0 720530.0 True False 783101.0489216984 655515.6204971015 629579.9069730478 543584.4505281606 537156.9036817767 656134.6872619666 673561.009941425 734355.7932317697 731227.780157832 674545.1585232313 1.1609319836141532 0.9717890821901519 0.9333398943243102 0.8058533126502895 0.7963246002058098 0.9727068365569915 0.9985410189823899 1.0886680957572665 1.0840308775748904 1.0 19.36355550441048 2.1181286974365876 2.5918796402703066 1.063928026960046 0.9271035460124784 0.22132500042931735 0.0976498671721221 0.4044856205817431 5.3892163356584755 0.049033260335352206 0.03108200387726179 131.25888097583535 -2.1181286974365876 -0.1368244809475676 RDS(ph)PTYDPYKR ddPTM_BT-474_Trastuzumab_2h_R1 6 RDSPTYDPYKR 11 2 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 RDS(0.998)PT(0.002)YDPYKR;RDS(0.997)PT(0.001)Y(0.001)DPYKR;RDS(0.998)PT(0.002)YDPYKR;RDS(0.98)PT(0.02)YDPYKR;RDS(0.993)PT(0.006)Y(0.001)DPYKR;RDS(0.995)PT(0.004)Y(0.001)DPYKR 106.42 0.0014762 7255590000.0 2718820.0 2430690.0 2197640.0 2047740.0 2075480.0 2659930.0 2618680.0 2495120.0 3335960.0 2657480.0 True False 2704182.1752092964 2511594.0472668684 2507048.60977069 2306983.6740404875 2339780.0756662465 2476055.299901715 2492004.4440709404 2681318.5243626377 2513857.3575738105 2487877.3512169067 1.0869435239187284 1.0095329040390038 1.0077058696420087 0.9272899537881408 0.9404724370844806 0.9952481374094229 1.0016588811550597 1.0777535006101133 1.0104426395232853 1.0 21.246483933750635 1.9685046554611472 17.049467189057758 1.0384559002224565 0.9909783607707658 0.09500964780477406 0.04501842527229295 25.350428624936697 13720.85981467002 0.01953442365679494 0.012649683715109118 93.00464844225768 -1.9685046554611472 -0.04747753945169064 RDS(ph)QDGSSYR ddPTM_BT-474_Trastuzumab_2h_R1 6 RDSQDGSSYR 10 1 Q14847;Q14847-2;C9J9W2;Q14847-3;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 1 RDS(1)QDGSSYR;RDS(1)QDGSSYR;RDS(0.526)QDGS(0.047)S(0.427)YR;RDS(1)QDGSSYR;RDS(0.995)QDGS(0.002)S(0.003)YR;RDS(0.887)QDGS(0.052)S(0.052)Y(0.008)R 142.77 2.1537e-05 67191442000.0 750940.0 746856.0 727208.0 728135.0 733313.0 779550.0 786859.0 745061.0 883745.0 809302.0 True False 746897.0224772773 771714.6504760142 829592.5653947516 820316.8163426355 826696.0638633192 725661.5433633153 748795.6240767159 800661.2351630981 665957.8863262956 757651.6534816995 0.9858053091351408 1.0185612965136284 1.0949524911381847 1.0827097289010927 1.0911294921146601 0.9577772846249626 0.9883112121985258 1.0567669607579593 0.8789763518181001 1.0 19.531175165435293 2.7359131700978865 24.998785064793786 0.9872155358151566 1.0564276929147998 0.34943302922362973 0.052330567874584205 314.7604019704307 2972139.512586826 0.017176193275759172 0.016896487409512603 544.3937995458707 -2.7359131700978865 0.06921215709964312 RDS(ph)RS(ph)S(ph)EREESQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSRSSEREESQSR 14 3 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 3 RDS(1)RS(1)S(1)EREESQSR;RDS(1)RS(1)S(1)EREESQSR 105.52 0.0008602 340240000.0 313270.0 389460.0 246370.0 287750.0 296540.0 436310.0 326380.0 287530.0 389360.0 288150.0 True False 311583.38912756875 402422.94066645816 281056.7545135713 324179.12049632776 334302.61126971565 406148.91666326486 310591.7525073219 308986.9486477557 293407.44515669794 269760.0203023735 1.1550391669540783 1.4917812514077624 1.0418769771685785 1.2017315246824047 1.2392592901460953 1.5055934389685073 1.1513631714558004 1.145414165899798 1.087660969286027 1.0 18.04131702440793 1.5860006296911324 1.780978065309474 1.041167130529075 1.2662806868852203 0.2921350820359442 0.1369661968460388 0.4267945252692819 2.7483038970217737 0.10996768779981146 0.03870917835055523 38.54789165779608 -1.5860006296911324 0.22511355635614527 RDS(ph)SDDWEIPDGQITVGQR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDSSDDWEIPDGQITVGQR 19 1 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y492;A0A2R8Y679 P15056 BRAF Serine/threonine-protein kinase B-raf 1 RDS(0.424)S(0.291)DDWEIPDGQIT(0.285)VGQR;RDS(0.961)S(0.039)DDWEIPDGQITVGQR;RDS(0.912)S(0.088)DDWEIPDGQITVGQR;RDS(0.711)S(0.289)DDWEIPDGQITVGQR 319.76 7.2994e-62 5137940000.0 2818270.0 3125670.0 2561010.0 2838130.0 3154980.0 3296870.0 3426080.0 2821340.0 3377120.0 3365330.0 True False 2803096.747459234 3229706.0364425816 2921577.9473020313 3197436.966999972 3556748.0019684625 3068965.1368972007 3260347.421503419 3031882.71727423 2544874.027089555 3150551.758196032 0.8897161394562372 1.0251239415574218 0.927322631568158 1.0148815865925611 1.1289286051929561 0.9741040212760869 1.0348496618161431 0.962333886242913 0.807755029089482 1.0 21.587173080192432 1.4596530219487756 6.975919364184845 0.897251865133302 1.0013648408358626 0.20406672485231647 0.07446119702681685 0.1976097651222706 25.10041585572762 0.0422008779600383 0.01804563848787577 28.81728236500814 -1.4596530219487756 0.10411297570256062 RDS(ph)SDTTPLLNGSSQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDSSDTTPLLNGSSQDR 17 1 B4DQA8;E9PCW1 B4DQA8 GOSR1 Golgi SNAP receptor complex member 1 1 RDS(0.474)S(0.474)DT(0.044)T(0.004)PLLNGS(0.001)S(0.001)QDR;RDS(0.846)S(0.048)DT(0.048)T(0.041)PLLNGS(0.009)S(0.009)QDR;RDS(0.472)S(0.472)DT(0.041)T(0.015)PLLNGSSQDR 312.39 3.922e-58 1013840000.0 503843.0 528097.0 502100.0 474788.0 519954.0 578664.0 518037.0 522856.0 596400.0 583603.0 True False 501130.36527021986 545674.3894036215 572791.3156685643 534896.1121188895 586167.0598911901 538662.3197085364 492977.57121648215 561874.169728971 449425.2113505624 546356.9568923337 0.9172215324586298 0.9987506931501439 1.0483829453304458 0.9790231557796331 1.072864640042831 0.9859164652582366 0.9022994307980037 1.028401235933553 0.8225853184095671 1.0 19.059484304104316 2.4664627189266026 24.376474255617044 0.9481391497631078 1.006683341316167 0.17734641034592724 0.06476638322371653 296.16569536990124 677335.2258257464 0.021533445464145484 0.018034471134295696 292.72695754385296 -2.4664627189266026 0.058544191553059344 RDS(ph)SESQLASTESDKPTTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDSSESQLASTESDKPTTGR 20 2 Q96B23-2;Q96B23;A0A087WVF1;K7EQH1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 RDS(0.757)S(0.237)ES(0.005)QLASTESDKPTTGR;RDS(0.979)S(0.021)ESQLASTESDKPTTGR;RDS(0.824)S(0.176)ESQLASTESDKPTTGR;RDS(0.976)S(0.024)ESQLASTESDKPTTGR 276.65 7.7798e-45 15499170000.0 3077320.0 2952950.0 2862560.0 2573650.0 2700940.0 3129010.0 3311210.0 2809890.0 3781800.0 3094640.0 True False 3060752.051042394 3051237.155654028 3265583.5661824453 2899473.8261177177 3044888.6992743816 2912708.903597265 3151034.1222494263 3019578.2601323063 2849826.0635237326 2897137.4257454006 1.0564745820626362 1.0531903417971205 1.12717592792211 1.0008064513445425 1.0509990559011768 1.0053747805380195 1.08763709109819 1.0422626946512221 0.9836696175330739 1.0 21.466196689810637 1.685316939464988 0.23746633148794688 0.9863697783481697 1.0805953594064461 0.2487620156660464 0.03671420551592294 3.310374781744958 0.8159063487285843 0.11182496991852876 0.12284618244363142 48.452583589824314 -1.685316939464988 0.09422558105827639 RDS(ph)SGGTKDGDRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSGGTKDGDRPK 14 3 Q9Y478;F5H4Y8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 RDS(0.961)S(0.018)GGT(0.021)KDGDRPK 116.96 0.0018312 55524000.0 120300.0 87074.0 76361.0 73130.0 76004.0 102950.0 120830.0 92537.0 166490.0 108440.0 True False 119652.31816658663 89972.20545265544 87111.96505828972 82388.2505018122 85682.65888899792 95833.30881823256 114984.99128457531 99442.58083336483 125460.77035170198 101519.26635984523 1.1786168523171452 0.8862574433284409 0.8580830829639037 0.8115528554922646 0.8440039212388231 0.9439913452343299 1.1326420630050602 0.9795439269712669 1.2358321218259565 1.0 16.631394022971598 2.3693318989741528 5.490879077517536 1.0748556925770651 0.9041309536327229 0.3290922753707999 0.11581317601824331 0.2482384834583281 11.128960458955726 0.04061270259099854 0.03372567932891691 234.0625321184376 -2.3693318989741528 -0.17072473894434226 RDS(ph)SSHEETPGSHPLYGHGECK ddPTM_BT-474_Trastuzumab_2h_R1 4 RDSSSHEETPGSHPLYGHGECK 22 1 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 RDS(0.513)S(0.174)S(0.313)HEETPGSHPLYGHGECK;RDS(0.333)S(0.333)S(0.333)HEETPGSHPLYGHGECK;RDS(0.297)S(0.297)S(0.297)HEET(0.049)PGS(0.059)HPLYGHGECK;RDS(0.333)S(0.333)S(0.333)HEETPGSHPLYGHGECK 205.59 3.889e-23 3315080000.0 1909565.0 2287213.0 2124313.0 1976928.0 2026423.0 2430953.0 1925591.0 753537.0 2737195.0 1837870.0 True False 1899284.1142126143 2363341.5020555453 2423397.805540398 2227206.8821010035 2284475.9574998687 2262906.940957836 1832442.8068580395 809769.7573233537 2062649.968783873 1720575.5631203284 1.1038655638978105 1.3735761176158616 1.4084808929550734 1.2944545591836027 1.3277393951573309 1.3152034641558952 1.065017338462506 0.4706388807794096 1.1988139393559558 1.0 20.71445982213439 2.020499509324107 5.323837145093518 0.8150466363074804 1.3064972229000105 0.48203346661271673 0.18932049733318485 0.11686744910287138 9.72026990136054 0.0733212993184874 0.05085499177052157 104.83336091489124 -2.020499509324107 0.49145058659253005 RDS(ph)TEAPKPK ddPTM_BT-474_Trastuzumab_2h_R1 5 RDSTEAPKPK 10 2 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 RDS(0.957)T(0.043)EAPKPK;RDS(0.999)T(0.001)EAPKPK;RDS(0.977)T(0.023)EAPKPK;RDS(0.795)T(0.205)EAPKPK;RDS(0.5)T(0.5)EAPKPK 175.88 1.391e-06 2714050000.0 3008132.0 2323255.0 2027841.0 2002361.0 1955572.0 2656464.0 2548115.0 2615877.0 4239552.0 2540864.0 True False 2991936.5515468814 2400583.138237693 2313343.3864900563 2255859.6972933025 2204602.5026166486 2472828.8963236287 2424852.9427054157 2811087.0248942557 3194771.216686281 2378703.8841768857 1.2578011796462827 1.009197972982828 0.9725226422163739 0.9483566711683865 0.9268082997979035 1.0395698736496215 1.0194009262083914 1.1817725794259548 1.3430722663454946 1.0 21.181744256631994 1.7081279361319526 4.529076010845437 1.199687544905174 1.015507554166635 0.2520712225326368 0.11577617764463073 0.19560642128322273 9.437366474846622 0.060676270980483366 0.029732714079226872 51.06554086465744 -1.7081279361319526 -0.18417999073853908 RDSAS(ph)YR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSASYR 7 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 RDS(0.109)AS(0.891)YR;RDS(0.039)AS(0.961)YR 104.89 0.0085272 1709280000.0 669850.0 733250.0 704080.0 765770.0 674430.0 582800.0 718740.0 679960.0 845180.0 767190.0 True False 666243.6020273322 757655.7829910156 803208.3440269318 862716.4034838331 760314.6628402052 542512.4077636322 683971.800346566 730702.0679669182 636896.7138317709 718227.2773755956 0.9276222485753925 1.054896976009449 1.118320578079208 1.2011746569083273 1.0585989794461679 0.7553492116673346 0.952305519286041 1.0173688621753625 0.886762079211184 1.0 19.454080920236937 2.97157662465014 24.84299510536164 0.9310592660876896 1.0836896810867953 0.3937918188197317 0.09256236835815064 707.0176773056303 617957.7544377599 0.029407366068688535 0.0312515153028447 936.6484626794025 -2.97157662465014 0.15263041499910568 RDSFDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSFDDR 7 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ; 116.37 0.008771700000000002 412890000.0 697840.0 859790.0 686880.0 764780.0 768210.0 740850.0 706520.0 701270.0 816620.0 754140.0 False True 694082.9069773124 888407.5903959688 783586.7335320122 861601.0695853402 866036.9899625967 689636.7832733141 672342.9284314996 753602.3283769061 615374.9431473775 706010.1395482635 0.9831061455029773 1.2583496194040658 1.1098802830698518 1.2203805884949905 1.2266636715964525 0.976808610304909 0.9523134170023314 1.0674100641941122 0.8716233785836582 1.0 19.42932937772215 2.7275698606560397 24.26507787321638 0.9834145224991323 1.16576396691318 0.5418999546065928 0.0851993142699281 371.71733006558617 820665.1509235718 0.026117424391271273 0.024857158039540136 534.0351716190856 -2.7275698606560397 0.18234944441404777 RDSFDDRGPSLNPVLDYDHGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDSFDDRGPSLNPVLDYDHGSR 22 2 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;; 233.5 1.2281e-30 1020110000.0 208506.0 412328.0 401801.0 475288.0 474496.0 414013.0 463145.0 388309.0 449976.0 475521.0 False True 207383.42686319447 426052.088222461 458371.0882831003 535459.4120676232 534920.2530418665 385393.25579177256 440740.9069642856 417286.5893731485 339085.44416948454 445172.84266599 0.46584923199996897 0.9570486952235872 1.0296474635291553 1.20281239273478 1.2016012698313074 0.865716007031746 0.9900444607645807 0.9373585928426359 0.7616939122764457 1.0 18.764006059600653 4.737968777532926 4.1548116860724 1.001923238806402 0.422203887418327 0.6097140365217899 0.12712279020536643 0.15602880934375352 6.0057466229140575 0.03268937208819663 0.27009399499042125 54697.663802413044 -4.737968777532926 -0.5797193513880752 RDSIVAELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDSIVAELDR 10 1 O14579;M0QXB4;O14579-3 O14579 COPE Coatomer subunit epsilon 0 ; 200.67 5.3899e-06 468190000.0 345210.0 416010.0 384420.0 384930.0 355200.0 407910.0 385200.0 337270.0 474100.0 382590.0 False True 343351.4277164365 429856.64136664406 438542.99456146057 433662.09853223833 400432.6145646556 379712.1418168552 366566.4043931016 362438.80002235854 357264.4076145226 358172.7786482212 0.9586195495153988 1.2001376625799556 1.224389514514655 1.2107623035143014 1.1179872911501736 1.060136795570913 1.0234345719307836 1.0119105125471504 0.9974638747335102 1.0 18.45029617021537 2.6352606646723244 2.0111726805145684 1.0093272482046234 1.1574607129109056 0.44894992686865776 0.0704220597767453 0.29654934114965414 2.379014471705551 0.027337833373480846 0.02509390143242094 431.7781534362265 -2.6352606646723244 0.1481334647062822 RDSQDGSSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSQDGSSYR 10 1 Q14847;Q14847-2;C9J9W2;Q14847-3;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 0 149.49 3.727800000000001e-05 79204000.0 67792.0 92197.0 77735.0 86500.0 80333.0 72682.0 81309.0 71757.0 102730.0 78483.0 False True 67427.01540439934 95265.72141073647 88679.41231526749 97450.89113095512 90562.93137900469 67657.66441502456 77375.77303945656 77111.87171466283 77413.56801147417 73474.1477473232 0.9176971420788728 1.2965883148227084 1.2069471376549346 1.326328975820008 1.2325822640427166 0.9208363280061245 1.0531020149502246 1.0495102574016881 1.053616413186562 1.0 16.164949099192082 2.7548243215203727 24.73867217098956 1.0241457604581226 1.2094608976629406 0.39977092892153787 0.10978276323241026 702.3963171192948 1068411.8981478426 0.03276444753838781 0.03465838401353778 568.6228680355836 -2.7548243215203727 0.18531513720481807 RDSS(ph)DDWEIPDGQITVGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSDDWEIPDGQITVGQR 19 1 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y492;A0A2R8Y679 P15056 BRAF Serine/threonine-protein kinase B-raf 1 RDS(0.382)S(0.618)DDWEIPDGQITVGQR 164.79 1.4138e-11 1511100000.0 974650.0 902690.0 783610.0 923530.0 918170.0 974440.0 1064100.0 803190.0 1047400.0 1031000.0 True False 969402.5926937942 932735.4909623716 893935.4767397802 1040448.8033083363 1035093.5070800385 907079.2563850288 1012625.4177432487 863128.1163161785 789282.304440943 965200.6973164921 1.0043533903249184 0.9663642945509859 0.9261653863545192 1.0779610978328689 1.072412721994365 0.9397830512420309 1.0491345691715823 0.8942472987389029 0.8177390532718761 1.0 19.88046943227672 1.6555495827386022 6.580201192672423 0.8908529084115382 1.0032494569504575 0.33684995107779825 0.06413366443345521 0.13431296756943317 11.7081430418139 0.03245571161918404 0.01628250051873817 45.24281124115776 -1.6555495827386022 0.11239654853891934 RDSS(ph)DTTPLLNGSSQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSDTTPLLNGSSQDR 17 1 B4DQA8;E9PCW1 B4DQA8 GOSR1 Golgi SNAP receptor complex member 1 1 RDS(0.32)S(0.502)DT(0.127)T(0.033)PLLNGS(0.01)S(0.01)QDR 85.36200000000002 0.0019789 0.0 83778.0 79571.0 72140.0 65458.0 64385.0 88808.0 91763.0 78100.0 94908.0 93394.0 True False 83326.94855661092 82219.47263331477 82296.6849478794 73744.9760884401 72584.04811020642 82668.91199154538 87324.07312129845 83928.2185837643 71519.19510204409 87433.51496137373 0.9530321249628704 0.9403656328998964 0.9412487303551313 0.8434405973615389 0.8301627601529289 0.9455059884995674 0.9987482850240709 0.9599090076710517 0.8179837575286748 1.0 16.41589877827167 2.5248945382133425 24.998446399866914 0.9483328727278755 0.9012736536229213 0.10977865392342745 0.060450521170414814 901.6230288552947 471793.4607745487 0.020431595295495365 0.019262681407707566 334.8841077886655 -2.5248945382133425 -0.04705921910495414 RDSS(ph)ESQLASTESDKPTTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSESQLASTESDKPTTGR 20 2 Q96B23-2;Q96B23;A0A087WVF1;K7EQH1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 RDS(0.306)S(0.663)ES(0.03)QLASTESDKPTTGR 247.55 3.0229e-30 952410000.0 183960.0 189670.0 170770.0 153600.0 155580.0 191000.0 178900.0 178210.0 242360.0 201320.0 True False 182969.5797998773 195983.05129206358 194812.93164055125 173045.74425103725 175392.19080509327 177796.61956563793 170245.92353563296 191508.93513204396 182633.62545761612 188471.5852412763 0.9708072416626863 1.0398546340084702 1.033646166827519 0.9181529620473489 0.9306028310875661 0.9433603444149282 0.9032975624293108 1.0161156913222718 0.9690247218105233 1.0 17.523987507630785 3.74983245572258 24.98268847905268 0.9542638875279008 1.0172778790049144 0.3589071746524308 0.036949655791171536 812.4556718981701 1800707.4602586667 0.009890367361322847 0.017634958147116256 5621.244242084345 -3.74983245572258 0.06301399147701359 RDSSDT(ph)TPLLNGSSQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSDTTPLLNGSSQDR 17 1 B4DQA8;E9PCW1 B4DQA8 GOSR1 Golgi SNAP receptor complex member 1 1 RDS(0.086)S(0.086)DT(0.35)T(0.35)PLLNGS(0.064)S(0.064)QDR 263.68 3.9388e-27 575910000.0 282110.0 319510.0 295570.0 288220.0 301620.0 322430.0 333300.0 279140.0 318400.0 332730.0 True False 280591.1511053673 330144.697202126 337183.686859505 324708.6224481373 340029.51915819675 300141.17301857914 317177.00567035476 299970.84424419905 239934.58634141335 311494.8865355156 0.9007889478576568 1.0598719641084189 1.082469412611242 1.042420394310759 1.091605460815254 0.9635508831518429 1.0182414523655152 0.9630040723316894 0.7702681382991396 1.0 18.248848954763442 1.515540547619044 4.091948537049039 0.8792296669549873 1.0265577036451512 0.34402615174580353 0.07469959558274578 0.1742802204179235 6.32356877730416 0.04532895047868616 0.01839219336575321 32.77483753885336 -1.515540547619044 0.14732803669016392 RDSSES(ph)QLASTESDKPTTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSESQLASTESDKPTTGR 20 2 Q96B23-2;Q96B23;A0A087WVF1;K7EQH1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 RDS(0.349)S(0.069)ES(0.579)QLAS(0.002)TESDKPTTGR 139.47 1.6818e-07 5049100000.0 695470.0 647520.0 650020.0 526860.0 636200.0 846330.0 713580.0 753370.0 918270.0 720930.0 True False 691725.6667939809 669072.3117658942 741537.1659248747 593560.4219798278 717216.2989471679 787825.199146526 679061.4092596802 809590.2949353453 691974.6626875927 674919.6301807743 1.024900796867777 0.9913362744934328 1.0987043979240272 0.8794534866630642 1.0626691933009338 1.1672874278905039 1.0061366996805183 1.1995358539482694 1.0252697235999053 1.0 19.364356189869902 3.010422973856552 24.87893310764948 1.09663453331905 1.0009592591807883 0.17559376940168925 0.0794890585251924 274.721416326017 655736.3286548529 0.021598225950257358 0.025790581465386025 1024.290096876208 -3.010422973856552 -0.0956752741382616 RDSSGGT(ph)KDGDRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDSSGGTKDGDRPK 14 3 Q9Y478;F5H4Y8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 RDS(0.288)S(0.288)GGT(0.424)KDGDRPK 93.152 0.0048086000000000005 54364000.0 115690.0 72062.0 68116.0 60890.0 64553.0 98771.0 95821.0 88055.0 149610.0 104070.0 True False 115067.13789436748 74460.54010760103 77706.14072511428 68598.66775680764 72773.44191439246 91943.19325192484 91185.77215823295 94626.11123422987 112740.62017129028 97428.16350119041 1.1810459497469799 0.7642609429530225 0.7975736987402502 0.7040948457985609 0.7469446133355813 0.9437024156860089 0.9359282663387041 0.9712398123266862 1.1571666355992924 1.0 16.572051251141424 1.923145442075147 1.3458052755786492 1.0627121855162982 0.8322037803261283 0.29469232309164684 0.13279869131418157 0.5201855945838672 1.7487783459383337 0.09815404818805777 0.043433707286055945 83.78098115858563 -1.923145442075147 -0.2305084051901699 RDTFNHLTTWLEDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDTFNHLTTWLEDAR 15 1 P61019;P61019-2;E9PKL7 P61019 RAB2A Ras-related protein Rab-2A 0 ; 174.17 6.0244e-07 815580000.0 344200.0 487410.0 539960.0 503510.0 476950.0 510640.0 530110.0 381550.0 493920.0 466650.0 False True 342346.86544421496 503633.1472044325 615981.674583544 567254.3143739569 537686.7553958681 475340.6587172636 504466.554083143 410023.1984716419 372200.03418891615 436867.99748083507 0.7836391482514884 1.1528268266583805 1.4099949598861758 1.298457011374109 1.2307762493393806 1.0880647276941275 1.1547345124662591 0.9385516925845071 0.8519736770264207 1.0 18.736837900276786 1.7428444945652548 3.1264770800561092 0.9130288590851577 1.1780069797567059 0.3054583052904898 0.15710096858527664 0.2704461616927637 5.528256586029356 0.09462745299227068 0.04485646597383772 55.3152009656137 -1.7428444945652548 0.26497812067154813 RDVKPDEDLASK ddPTM_BT-474_Trastuzumab_2h_R1 2 RDVKPDEDLASK 12 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 ; 152.4 3.9242e-05 276850000.0 676830.0 581470.0 511220.0 455770.0 472340.0 674570.0 585340.0 612840.0 1055090.0 636850.0 False True 673186.0224828817 600823.8774439625 583195.3323961037 513470.43526884925 532489.6992214787 627938.5636669762 557024.8679840547 658573.2327384641 795077.2069816644 596205.6877652832 1.1291170753605835 1.0077459671610807 0.9781780757276145 0.8612303535604553 0.8931308609573538 1.0532247117947418 0.934283049314596 1.1046074303768367 1.33356192887357 1.0 19.185450613052755 1.5668471140480702 4.693441735884774 1.1819817327255464 0.9763605447475164 0.35320218798014935 0.1044072755389121 0.14948633483861573 7.205099850643718 0.05918054334567275 0.026298913631569183 36.88477291714759 -1.5668471140480702 -0.20562118797802997 RDVTQLDPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 RDVTQLDPNK 10 1 Q9UNN5;B1ANM7;Q9UNN5-2 Q9UNN5 FAF1 FAS-associated factor 1 0 85.288 0.022996 292060000.0 200200.0 180270.0 176860.0 166010.0 149310.0 201530.0 203260.0 182620.0 280070.0 212750.0 False True 199122.14544431126 186270.17797448364 201760.35070532234 187026.84897861138 168323.7434702948 187598.70545059178 193427.53727139594 196248.03172557038 211050.50124572765 199172.11285556125 0.9997491244605803 0.9352221819806971 1.012994981137937 0.939021263053239 0.8451170249540028 0.9418924304259279 0.9711577313620644 0.9853188225597055 1.059638812983726 1.0 17.603656136594573 1.6117157738473198 2.2097081052848164 1.0283848044381438 0.9450352686408162 0.3346203536003679 0.04501193392997181 0.3226542776207518 3.4391193524517902 0.0348538587295985 0.013049008915653394 40.89929047113219 -1.6117157738473198 -0.08334953579732762 RDVYLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 RDVYLSPR 8 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 1 RDVYLS(1)PR;RDVYLS(1)PR 130.1 0.00065076 1274090000.0 1031170.0 1339010.0 1348310.0 1208030.0 741800.0 1006130.0 1170380.0 864060.0 1656050.0 1105430.0 True False 1025618.2952937583 1383578.1384013626 1538140.3282793884 1360966.4741378946 836263.8330069297 936578.6012752638 1113764.2481142215 928540.5448077773 1247938.667433095 1034880.5109937632 0.991049966057327 1.3369448199123548 1.4862975115864927 1.3150952788076 0.8080776709225028 0.9050113431703307 1.0762249711753762 0.8972442083348627 1.2058770594053787 1.0 19.981032770721864 3.25612479966996 24.996052305421337 0.9745347827688221 1.3008147751886348 0.4775331243196701 0.15326167120667497 197.45575374539752 281002.81612766744 0.04247853815228727 0.057388450871579344 1803.535933841466 -3.25612479966996 0.32627999241981265 RDWGDHGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RDWGDHGR 8 1 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 0 ;; 131.41 0.0016136 220302000.0 284380.0 425736.0 387175.0 404542.0 414094.0 320697.0 356797.0 321299.0 313394.0 381760.0 False True 282848.92967758793 439906.3653971538 441685.87461457105 455756.9757213747 466826.41637256905 298527.97122953617 339537.36601309816 345275.96290326375 236162.24796445027 357395.7499588206 0.7914166010932643 1.2308662468645475 1.2358453469731032 1.27521655132689 1.306189053524999 0.8352868529184603 0.9500319073526193 0.9660886088965711 0.6607863915328066 1.0 18.447162952829114 2.7302235399159347 24.758394603219166 0.8931583604799581 1.181140531719469 0.4383742247751503 0.16098194613028738 521.5077796960288 1548703.91875944 0.051558031647615514 0.0493558086772045 537.3082883554492 -2.7302235399159347 0.28798217123951086 RDYDDMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 14 RDYDDMSPR 9 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR 183.94 4.7233e-05 13493070000.0 6914529.0 8056994.0 7209231.0 7673814.0 7482779.0 8043082.0 8112448.0 7530967.0 9461597.0 8582912.0 True False 6877301.944140394 8325166.174734275 8224228.061040816 8645318.065586116 8435666.551744081 7487082.672718486 7720017.89767914 8092965.99901557 7129913.198254271 8035143.207959336 0.8559028465513814 1.0360943121073003 1.023532231870389 1.0759382679106904 1.0498464474644336 0.931792063805663 0.9607816186812894 1.0071962365274283 0.8873411479700355 1.0 22.937892306176828 2.7352340713471563 24.957149568540665 0.9622497911069284 1.0144170622942885 0.13136403754510972 0.06380144428634181 584.1918335255249 4382833.398999025 0.02027788507185806 0.019901614934927408 543.5432056040684 -2.7352340713471563 0.05216727118736009 RDYDDMSPR ddPTM_BT-474_Trastuzumab_2h_R1 5 RDYDDMSPR 9 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;; 188.99 6.2114e-05 3010040000.0 597880.0 754840.0 710280.0 689600.0 655100.0 618210.0 681840.0 625158.0 787220.0 736470.0 False True 594661.0805107126 779964.3930895848 810281.2501355654 776903.2892937189 738523.1019180901 575474.5978098067 648856.7943182561 671810.4644480005 593220.1792075614 689467.8540763109 0.8624928297888345 1.1312556321200984 1.1752270179747681 1.1268158257132181 1.0711494343815335 0.8346648714765355 0.9410979648754445 0.9743898290197065 0.8604029552651244 1.0 19.395123763165458 2.848016980159242 7.1782577594667405 0.9269183446070248 1.0866480394209554 0.40595701572589615 0.09083086968007636 0.2575043357326378 14.983194593946846 0.027775993415826844 0.029506591575651598 704.7206217796981 -2.848016980159242 0.15972969481393062 RDYEVDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RDYEVDGR 8 1 A0A590UJD9;A0A0C4DFT3;A0A590UJ18;F8VYC1;E9PIW2;E9PN83;A0A3B3ISW2;B7Z2T4;A0A3B3ITF1;F8W750;Q15700-2;Q15700-4;Q15700;Q15700-3;B5MCC5;H7C325;Q15700-5;A0A590UJ08;Q12959-4;Q12959-2;A0A590UJC5;Q12959;Q12959-3;Q12959-5;Q12959-7;Q12959-6;A0A590UKA8;A0A590UJR5;A0A590UJ68;A0A590UJS9;A0A590UK48;A0A590UJ81;C9JUA9;Q12959-8;A0A590UJX2;A0A590UK81;A0A590UJ29;Q12959-9;A0A590UJR4 A0A590UJD9;A0A590UJ08;Q12959 DLG1;DLG2 Disks large homolog 2;Disks large homolog 1 0 68.335 0.09103 246500000.0 233990.0 278940.0 305390.0 299450.0 275510.0 284250.0 259800.0 200310.0 263190.0 270230.0 False True 232730.2238387327 288224.349277209 348386.257502535 337360.33929669985 310594.5654242914 264600.46655252686 247232.48146762088 215258.14935357025 198330.35106531606 252983.69004445756 0.9199416128282196 1.1393001233658917 1.377109557700388 1.3335260436647696 1.227725650494345 1.0459190729095138 0.9772664847452182 0.8508775775851095 0.7839649703522898 1.0 17.94868485125179 2.3444331423872153 1.8784563515006278 0.8711240785287415 1.2122326864820434 0.5455026451707599 0.12785553161692878 0.25877551216898587 1.8622942180435174 0.06303372844627657 0.044851215600958214 221.0207978883596 -2.3444331423872153 0.3411086079533019 RDYS(ph)YER ddPTM_BT-474_Trastuzumab_2h_R1 2 RDYSYER 7 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 RDYS(1)YER;RDYS(1)YER 84.06 0.023116 757460000.0 752820.0 780670.0 696720.0 730130.0 739770.0 726190.0 796050.0 724780.0 1037850.0 875220.0 True False 748766.9007661651 806654.1290250187 794812.120001198 822564.3831380854 833975.3245396822 675990.1945673864 757542.0202936876 778866.7639582672 782085.7739774991 819362.7102864601 0.9138405877714233 0.9844896758152463 0.9700369690040216 1.0039075159406583 1.0178341216530509 0.8250194768212618 0.9245502764323272 0.9505762883521572 0.9545049636248049 1.0 19.64414271078814 RDYYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RDYYDR 6 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 ;;; 115.69 0.038824 1641820000.0 1335520.0 1665150.0 1176530.0 1417300.0 1431820.0 1536200.0 1148460.0 1209270.0 1680270.0 1434460.0 False True 1328329.7087102213 1720573.5111455678 1342175.1974179167 1596730.0346809577 1614153.7899379656 1430006.1098258288 1092904.6022567514 1299511.867948639 1266189.9729644684 1342911.534697008 0.9891416332274808 1.2812262510901502 0.999451685937557 1.1890061209737222 1.2019807323362934 1.0648550354051962 0.8138321654250561 0.9676824082398242 0.9428692361706091 1.0 20.356932838603576 2.439413866765079 7.496791011379882 0.9290573298651281 1.1360565881813447 0.5046756472568139 0.09406760683166975 0.15574066503366218 25.13516217237723 0.030303422514347585 0.025442268370636175 275.05140439094293 -2.439413866765079 0.20699925831621657 REAEALLQSMGLTPESPIVPPPMS(ph)PSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 REAEALLQSMGLTPESPIVPPPMSPSSK 28 1 Q13409-2;Q13409-3;Q13409-6;E7EQL5;E7EV09;E7EQU2;E7ETL8;E9PGG1 Q13409-2 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 REAEALLQSMGLTPESPIVPPPMS(0.954)PS(0.038)S(0.008)K 86.081 0.0022736 172070000.0 52218.0 50516.0 44033.0 37605.0 44942.0 59562.0 48953.0 45005.0 64026.0 51233.0 True False 51936.8640899652 52197.394522433126 50232.46365830288 42365.78914427246 50665.09730789628 55444.61913386664 46584.956371379754 48363.50163075941 48247.65020444518 47963.26607722194 1.082846693683155 1.088278567985636 1.0473111563634445 0.8832965852672039 1.0563312603925747 1.1559808926397872 0.9712632224914985 1.0083446267585925 1.0059292068802272 1.0 15.549642282525449 3.999745700741584 24.935701443044334 1.0130040628224481 1.0811207230067097 0.17594433340774196 0.06417244790378379 16.54233638544117 1622878.4140877333 0.016614752022075387 0.03530128342078051 9994.146257168295 -3.999745700741584 0.06811666018426155 REALEK ddPTM_BT-474_Trastuzumab_2h_R1 2 REALEK 6 1 O43707;O43707-2;F5GXS2;O43707-3;Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3;Q4VCS5;E7ERM3;Q4VCS5-2;A6NP16 O43707;Q9Y2J4;Q4VCS5 ACTN4;AMOTL2;AMOT Alpha-actinin-4;Angiomotin-like protein 2;Angiomotin 0 ; 108.09 0.049244 650220000.0 1929820.0 1707670.0 1374880.0 1282090.0 1303200.0 1579220.0 1812960.0 1386340.0 2254500.0 1542950.0 False True 1919430.063543156 1764508.7636416857 1568451.1533288085 1444402.4625443504 1469154.7953284332 1470052.2384840155 1725260.1986202418 1489795.7304918794 1698908.6837522518 1444477.6100140465 1.328805687423906 1.2215549423604615 1.0858258670506886 0.999947976023183 1.0170838129599993 1.017705105494657 1.194383482761955 1.0313733630508763 1.176140545186942 1.0 20.4621164110446 4.397239643091849 2.489534867388386 1.0642612448615474 1.3238437206157179 0.6367289638603915 0.06598926300766447 0.19150946508472763 2.181019467128994 0.016692415702192712 0.0768084322442143 24959.7162069721 -4.397239643091849 0.2595824757541705 RECPSDECGAGVFMASHFDR ddPTM_BT-474_Trastuzumab_2h_R1 3 RECPSDECGAGVFMASHFDR 20 1 P62979 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ;; 224.03 3.9382e-25 2013640000.0 910650.0 1094640.0 966020.0 1198140.0 1019510.0 1066540.0 1073690.0 919960.0 1288270.0 1183440.0 False True 905747.1615827256 1131074.4306761452 1102027.2192036377 1349824.4011519381 1149338.555390799 992812.600165109 1021751.5128058896 988612.086662224 970793.1204335818 1107911.8460060423 0.8175263806844302 1.0209065231621115 0.9946885423929545 1.2183500032227081 1.0373917018164374 0.8961115487158483 0.922231779079937 0.8923201698999005 0.876236790799949 1.0 20.07941166335616 2.7397484682031887 24.860280902760483 0.9097138294640102 1.0278074760702074 0.2101997800172699 0.0957483707197504 141.80758052196873 2967886.202292649 0.030721832094127863 0.03095347448543707 549.2226865717894 -2.7397484682031887 0.11809364660619714 REDEGEPGDEGQLEDEGS(ph)QEK ddPTM_BT-474_Trastuzumab_2h_R1 2 REDEGEPGDEGQLEDEGSQEK 21 1 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 REDEGEPGDEGQLEDEGS(1)QEK;REDEGEPGDEGQLEDEGS(1)QEK 317.59 5.502399999999997e-67 1804590000.0 1843910.0 1307970.0 1306840.0 1169170.0 1211150.0 1614940.0 1597370.0 1469760.0 1938280.0 1546590.0 True False 1833982.5934376623 1351504.9907654377 1490831.7127430898 1317186.8021223003 1365382.7734515292 1503302.9989598496 1520099.1105540178 1579440.9544900553 1460616.865621341 1447885.3020976852 1.266662898491063 0.9334337387135484 1.0296614728964955 0.9097314547042988 0.9430186020076128 1.038274921902913 1.049875365370247 1.0908605482780807 1.0087932127670682 1.0 20.465515889529186 -0.2831776481128533 8.16913243990182 1.0000027416638406 1.026861701512297 0.007772750513789672 0.09595447362215846 0.0 0.0 0.08935511514360109 0.02106120261724837 0.5209815600601487 0.2831776481128533 0.02685895984845632 REDFCPR ddPTM_BT-474_Trastuzumab_2h_R1 1 REDFCPR 7 1 Q9H0W8-2;Q9H0W8 Q9H0W8-2 SMG9 Protein SMG9 0 111.74 0.01044 114850000.0 88615.0 150190.0 158310.0 165790.0 148990.0 115960.0 144100.0 111700.0 89358.0 151330.0 False True 88137.90668605197 155188.9833582279 180598.6719448124 186778.99700116823 167962.99336708363 107943.95814047845 137129.33248454292 120035.62120110716 67336.91823585442 141671.98983986868 0.6221265529316975 1.0954104868127952 1.274766255128783 1.3183904398624162 1.1855765812065715 0.7619287218488786 0.967935388212869 0.8472784305266198 0.4753015632233661 1.0 17.112195023704583 2.737601519789206 24.978434437667648 0.8181906311250197 1.1209654564051632 0.2943624404031068 0.22211748943638604 111.07389287471545 2892737.07458324 0.07188774799389715 0.07143904936659524 546.5142870126522 -2.737601519789206 0.30277482528014354 REDLVEEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 REDLVEEIK 9 1 B3KWE1;P12081-4;P12081;B4DDD8;P12081-3;P12081-2;B4E1C5 B3KWE1 HARS Histidine--tRNA ligase, cytoplasmic 0 ; 166.69 9.7087e-05 499660000.0 721960.0 663750.0 590550.0 622800.0 558930.0 757360.0 740380.0 638860.0 960750.0 792930.0 False True 718073.0475772975 685842.5175046513 673694.3068473819 701646.4161428771 630106.4224623401 705005.4858336741 704564.9908737388 686534.9772653467 723986.0358904309 742324.5285384734 0.9673303521184684 0.9239119699506269 0.9075468759920755 0.9452017132241535 0.8488287780317941 0.9497267821955514 0.9491333827550094 0.9248447961392734 0.9752958551913296 1.0 19.501690514861796 1.0686161187264835 1.2195178608195023 1.0013834867659754 0.9230281083650018 0.3802637469005892 0.031138080852070385 0.4667594018733126 1.434739454879109 0.028472579929960582 0.008924107253380196 11.711596972346747 -1.0686161187264835 -0.07835537840097362 REDPS(ph)FERYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 REDPSFERYPK 11 2 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 REDPS(1)FERYPK;REDPS(1)FERYPK 83.869 0.012905000000000002 695750000.0 477480.0 505940.0 524830.0 539730.0 476090.0 642600.0 673200.0 582970.0 648270.0 649720.0 True False 474909.3007330155 522779.9070528112 598721.502095862 608059.7626602359 536717.2394934875 598178.5745176916 640634.7441262613 626474.1816616785 488512.5448729523 608254.313346722 0.780774242471017 0.8594758731366562 0.9843275895596878 0.9996801491050418 0.8823895329905266 0.98343498992454 1.0532350204002279 1.02995435941047 0.8031386447308042 1.0 19.214315120298192 4.415421951725032 2.982067044281672 0.9745359767404728 0.7878832193219195 0.42841645188952404 0.07001297643886618 0.23475357462477245 3.977762426888861 0.017796995674142075 0.07271527850110363 26026.870531791097 -4.415421951725032 -0.18665275741855325 REDS(ph)FESLDSLGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 REDSFESLDSLGSR 14 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 REDS(0.846)FES(0.154)LDSLGSR 140.68 1.0468e-05 861330000.0 622820.0 653590.0 616030.0 688040.0 566630.0 718040.0 675330.0 621560.0 642660.0 714140.0 True False 619466.8063218066 675344.3480465017 702761.6693712516 775145.7934536691 638786.971820864 668403.584884349 642661.7078888704 667943.9634177267 484285.0542028038 668562.9737939851 0.9265646328070402 1.0101432094183043 1.0511525419710197 1.159420763394724 0.9554626816915284 0.9997615947698516 0.9612583003839874 0.9990741180703657 0.7243671474275125 1.0 19.35070393258843 1.391054297198693 12.1967309611429 0.8613709678234136 1.0103100728058958 0.3137366658022426 0.08627321881866193 0.6337846634096604 86.66070332878832 0.0550811788135506 0.020194570961280855 24.60675228180662 -1.391054297198693 0.1489391049824822 REDS(ph)MEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 REDSMEDR 8 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;Q9UQ88-9;A0A087X1I0;A0A087WYI9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2;E9PFJ2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 REDS(1)MEDR;REDS(1)MEDR 73.435 0.046156 110277000.0 151357.0 158836.0 140152.0 134899.0 157466.0 138098.0 128803.0 112012.0 127392.0 117387.0 True False 150542.11072934375 164122.76024161043 159884.18337697792 151977.19956849393 177518.36172589564 128551.61030772509 122572.30681475742 120370.90422541116 95997.94856534348 109895.26115993319 1.369868992897303 1.4934471105424525 1.454877869067481 1.3829276891868696 1.6153413700664394 1.1697648192549528 1.1153557079806655 1.0953238834405472 0.873540383380457 1.0 16.74576965100179 2.5312623902142253 3.598652240451749 1.0439765480078584 1.459512303647877 0.8432806114593769 0.09018471991668708 0.09203367136478882 2.3965052041829793 0.031150982542484027 0.02802922389197222 339.83052795867627 -2.5312623902142253 0.41553575564001854 REDS(ph)MEDRGEEDDSLAIKPPQQMSR ddPTM_BT-474_Trastuzumab_2h_R1 2 REDSMEDRGEEDDSLAIKPPQQMSR 25 3 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;Q9UQ88-9;A0A087X1I0;A0A087WYI9;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2;E9PFJ2 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR 166.88 7.392199999999999e-11 550820000.0 174152.0 182072.0 172860.0 184190.0 170105.0 208528.0 202257.0 168755.0 263944.0 197446.0 True False 173214.38498210598 188132.15645515156 197197.1854739455 207508.43511457395 191766.86345867332 194112.95018211164 192473.0562132283 181348.35502052653 198898.53786839836 184844.82723797474 0.9370799690223661 1.0177842640570332 1.0668255553620007 1.1226088293367356 1.0374478221767438 1.0501400178875704 1.041268284805356 0.9810842842091181 1.076029775030331 1.0 17.49595514564636 4.683618387358021 3.175839980313794 1.0449397879762237 0.9275140785834416 0.4417810892917494 0.03707488862051461 0.2968351661795977 4.821556216425969 0.009736053201016628 0.07976969067946475 48263.45268368649 -4.683618387358021 -0.11742570939278207 REDS(ph)PGPEVQPMDK ddPTM_BT-474_Trastuzumab_2h_R1 12 REDSPGPEVQPMDK 14 1 O75382;O75382-3;O75382-2;E9PMK8;E9PMW5 O75382 TRIM3 Tripartite motif-containing protein 3 1 REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK 248.1 7.0718e-18 20975900000.0 14804150.0 13907900.0 12871090.0 12573470.0 12430140.0 15458750.0 15619870.0 14173650.0 19582770.0 15781720.0 True False 14724446.101295682 14370816.043996923 14683227.594480194 14165270.012813075 14013044.64978803 14390122.998483287 14864277.214402067 15231359.735336369 14756858.729174132 14774517.118189739 0.9966109879264743 0.9726758532300324 0.9938211500938224 0.9587636536271912 0.9484604158423413 0.9739826272065973 1.0060753319715485 1.0309209846583876 0.9988048077054331 1.0 23.81660764317087 2.190027374910351 4.482313631401859 1.0143258523751109 0.9728966044047266 0.5302223233460175 0.015908393187200564 0.14721053109386348 6.271115427018266 0.006363726097393987 0.004712498474846775 154.89142486410367 -2.190027374910351 -0.041429247970384275 REDS(ph)YHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 REDSYHVR 8 1 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 REDS(0.984)Y(0.016)HVR 57.149 0.06927799999999999 348970000.0 81802.0 62677.0 61233.0 76024.0 63982.0 65498.0 59848.0 44484.0 87334.0 56769.0 True False 81361.58712105657 64763.16605595343 69854.0741532228 85648.63060508367 72129.72844897461 60970.27742570762 56952.923598438014 47803.621965175 65811.7059156439 53145.95381761388 1.530908399918327 1.2185907186501432 1.3143817945755154 1.6115738725663364 1.3572007512840805 1.1472233170364246 1.0716323540619646 0.8994781075757399 1.238320157758318 1.0 15.697672238202006 2.619372482403543 2.560654281892316 1.0321260848454847 1.4057831711614455 0.6364081882158735 0.12832743671513355 0.18357280817734545 2.357347683266854 0.04686067068079793 0.04336486636480772 416.2674785739851 -2.619372482403543 0.37365708631596073 REDSFES(ph)LDSLGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 REDSFESLDSLGSR 14 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 REDS(0.088)FES(0.912)LDSLGSR 242.35 1.8709e-17 941060000.0 653190.0 750240.0 701710.0 724650.0 634600.0 813650.0 808370.0 657330.0 766660.0 853990.0 True False 649673.2976162308 775211.2848703421 800504.6686273421 816390.6156999617 715412.5484311105 757404.2906260812 769266.0548267171 706383.3024541065 577726.9157176766 799487.627062378 0.8126120725637468 0.9696351245844337 1.001272116703921 1.021142276710012 0.8948387995193979 0.9473621166709896 0.9621988243311451 0.8835450087572059 0.7226214592469246 1.0 19.60871618104564 1.5785499860925916 4.878184030733628 0.8443786961593277 0.948006421423597 0.140579479639919 0.08325775976060243 0.22301352236851701 11.515496370126746 0.0453182002596999 0.020475129807548825 37.89221441284752 -1.5785499860925916 0.10362772526426933 REEAAVDAQQQK ddPTM_BT-474_Trastuzumab_2h_R1 5 REEAAVDAQQQK 12 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;; 203.87 1.9248e-07 1601445000.0 2103290.0 1819510.0 1780040.0 1734769.0 1747878.0 2334340.0 2156270.0 2048160.0 2828470.0 2316590.0 False True 2091966.1203374865 1880071.2904329794 2030654.159614957 1954390.5775301277 1970459.9028154304 2172972.5702452953 2051962.9823486842 2201004.0995457424 2131431.468056209 2168743.2428675173 0.9645983346426403 0.8668943622607648 0.936327601846506 0.901162728210292 0.9085722384592119 1.0019501282098227 0.9461530262271038 1.014875369310924 0.982795669826745 1.0 21.048427832031 2.7426447802248144 24.977944903748657 0.9885411423350711 0.9131694687248378 0.6191440113445474 0.028848345887597566 212.79720463206496 1301426.1686693612 0.008318756583114654 0.008537252240665774 552.897696059277 -2.7426447802248144 -0.07537167361023323 REEAEESGPQLAPLGAPAPEPKPEPEPPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 REEAEESGPQLAPLGAPAPEPKPEPEPPAR 30 2 Q9BUP0;H7C0I0 Q9BUP0 EFHD1 EF-hand domain-containing protein D1 0 ; 162.85 2.1077e-12 966080000.0 585940.0 488370.0 444460.0 471480.0 399670.0 625030.0 624820.0 585490.0 735170.0 644780.0 False True 582785.3641440546 504625.1002241013 507036.1046844248 531169.3196580661 450565.60547031503 581823.1472623602 594595.0695558081 629182.2368579793 553997.2042732937 603629.5883760698 0.9654685180557634 0.8359846997919405 0.8399788785180194 0.8799590508594157 0.746427302681535 0.9638744661732456 0.9850330086625358 1.042331669908119 0.9177767540582282 1.0 19.203303999249723 2.5430296519074873 8.741678140668022 0.9927457946221832 0.8532220240775881 0.5532474413756877 0.05778072248540695 0.2726347779144445 34.3004213140548 0.018246565139392972 0.017158241111697517 349.16415421058474 -2.5430296519074873 -0.13952377054459508 REEDEENDNDNES(ph)DHDEADS ddPTM_BT-474_Trastuzumab_2h_R1 11 REEDEENDNDNESDHDEADS 20 1 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(0.999)DHDEADS(0.001);REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(0.997)DHDEADS(0.003);REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(0.999)DHDEADS(0.001) 370.87 2.370499999999999e-112 5572714000.0 2555171.0 2702898.0 2290701.0 2540230.0 2466491.0 2862229.0 2788780.0 2362394.0 2918567.0 2706044.0 True False 2541414.243242189 2792862.3259936552 2613211.789669979 2861822.8575443514 2780584.0088124806 2664369.846192338 2653876.057225837 2538687.8362736665 2199325.2696441608 2533341.9551591757 1.0031864186619472 1.1024419029993024 1.0315274589552144 1.1296630728102937 1.0975952153438244 1.0517213599081334 1.0475790888873855 1.0021102090476195 0.8681517570753579 1.0 21.27261039715038 1.5743447742069778 2.8075583375531257 0.9335733190985367 1.0702190647411818 0.5629577418020112 0.04628070176069074 0.14912983121003762 2.663831053263666 0.030477589533067822 0.011691317226303934 37.527080098515476 -1.5743447742069778 0.1366457456426451 REEDEPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 REEDEPEER 9 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 208.15 1.6872e-05 460260000.0 294260.0 322910.0 262190.0 299330.0 285000.0 287510.0 292910.0 279670.0 302030.0 306010.0 False True 292675.7368553592 333657.86414678337 299104.0730036666 337225.14730900375 321293.0606726542 267635.1104257415 278740.8242751381 300540.39553548465 227598.75349465152 286480.1798116581 1.0216264770839445 1.1646804479323543 1.04406550289206 1.1771325595044904 1.1215193347193626 0.9342185927197268 0.972984673698515 1.0490791919115319 0.7944659684459943 1.0 18.128075803727665 2.742658696952937 24.534872364394378 0.9630233461521056 1.1096084220913078 0.507596121138951 0.0760818119843781 235.03009921680547 1407108.3910366627 0.022890870738180566 0.023492157897483112 552.9154136461245 -2.742658696952937 0.14658507593920223 REEDEPEERS(ph)GDETPGSEVPGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 REEDEPEERSGDETPGSEVPGDK 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 REEDEPEERS(1)GDETPGSEVPGDK 190.79 1.1150999999999999e-17 1425600000.0 723430.0 793610.0 740330.0 736740.0 739910.0 1028600.0 992550.0 913660.0 1427100.0 1034900.0 True False 719535.1332606296 820024.8291026235 844562.0289362832 830011.208460347 834133.1527098373 957495.3030639539 944536.5645907902 981841.9486714732 1075410.3271602744 968851.7959775334 0.7426679046764287 0.8463883046996374 0.8717143658531935 0.8566957422243289 0.8609502053595613 0.9882784003077361 0.9749030434915898 1.0134077809917597 1.1099843460322305 1.0 19.8859164697358 2.7445105298936063 0.6916092719554424 1.05338392546631 0.8014282482788946 0.8276379852420878 0.042574996484514155 0.2862879171353995 0.29494961117972485 0.030910895193282308 0.03163995946813377 555.2780802153832 -2.7445105298936063 -0.2519556771874154 REEDSFDSDSTATLLNTRPLQDLS(ph)PSSSAQALEELFPR ddPTM_BT-474_Trastuzumab_2h_R1 1 REEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPR 38 2 I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2;I3L1B0 I3L1Z8 CNTROB Centrobin 1 REEDSFDSDSTATLLNT(0.007)RPLQDLS(0.563)PS(0.166)S(0.214)S(0.05)AQALEELFPR 104.52 1.0073e-05 91387000.0 6020.4 6830.3 6964.2 7525.2 5823.7 6338.9 6761.3 6912.6 9263.7 6719.3 True False 5987.986835329322 7057.642406496462 7944.698826088457 8477.889548423864 6565.313675225746 5900.706763165567 6434.2300883257385 7428.453313471557 6980.785262220329 6290.468521317851 0.9519142834967785 1.1219581470885238 1.262974101080796 1.347735787834091 1.043692318461887 0.9380393118840966 1.022853872731529 1.1809062056820052 1.1097401153130415 1.0 12.618951759351555 REEEEDFIR ddPTM_BT-474_Trastuzumab_2h_R1 2 REEEEDFIR 9 1 Q96A65 Q96A65 EXOC4 Exocyst complex component 4 0 ; 181.53 7.596899999999999e-05 483900000.0 279800.0 358860.0 331620.0 286520.0 301100.0 311150.0 339530.0 273610.0 345830.0 333420.0 False True 278293.5878887027 370804.43816454924 378309.21350728767 322793.4026224422 339443.300240478 289640.93286831543 323105.63676944375 294028.16756342823 260604.83038458248 312140.85014477663 0.8915641376629334 1.187939476657936 1.2119823897827566 1.0341273898393137 1.0874683659092939 0.9279174216831109 1.0351276887327674 0.941972726181314 0.8348949849521753 1.0 18.25183765080553 2.781060698778357 1.441906050758446 0.9428736550195815 1.1026179478389166 0.3089986963083523 0.09677989002079908 0.4720137907990909 1.9903076256764984 0.03998923971903512 0.03966227261492215 604.0330456133867 -2.781060698778357 0.1597442928193351 REEEEFNTGPLSVLTQSVK ddPTM_BT-474_Trastuzumab_2h_R1 3 REEEEFNTGPLSVLTQSVK 19 1 P62316;P62316-2;K7ERG4 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 0 ;; 251.13 1.7125e-25 366890000.0 456020.0 458927.0 468295.0 431905.0 366996.0 505360.0 517770.0 463722.0 728640.0 544780.0 False True 453564.8389885846 474202.10776777007 534226.865506891 486584.1287157831 413730.7652442859 470425.65268948075 492723.48702652147 498327.2903726035 549076.4352757777 510011.6739903768 0.8893224647974287 0.9297867714626422 1.0474796808611309 0.9540646881839105 0.811218225667698 0.9223821270772656 0.9661023701112741 0.9770899683014045 1.0765958178560007 1.0 18.96017074468814 1.597604296770645 2.165292935537039 1.0361077097969276 0.9298303742004655 0.34147917437141573 0.058856296006044855 0.3458875647095259 3.502034781467098 0.04734094390312516 0.017378508618122134 39.59171337862311 -1.597604296770645 -0.10627733559646202 REEEKEGEDKSQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 REEEKEGEDKSQPK 14 3 O14974;O14974-5;O14974-2;O14974-3;O14974-4;H0YIS3;H0YIM2;H0YIL7 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 90.367 0.0025323 91626000.0 90440.0 78697.0 66143.0 69486.0 62929.0 84936.0 95456.0 77938.0 170280.0 88246.0 False True 89953.08108882864 81316.38207165888 75455.35947473775 78282.92047543995 70942.63514059453 79064.5742378378 90838.42860266843 83754.12932114502 128316.77563510013 82614.06472879839 1.0888349506118895 0.9842922308519805 0.9133476209219229 0.9475737664333971 0.8587234555457562 0.9570352759834214 1.0995516187330643 1.0137998849964494 1.5532073873417618 1.0 16.33409979542115 1.39887176499853 10.539134877910588 1.280768958257369 0.9793427273326093 0.41014934153569393 0.1414077949889298 0.3583262973675086 45.583929607058316 0.08706494561762924 0.03211020926974074 25.053693783712855 -1.39887176499853 -0.3014262309247596 REEEMMIR ddPTM_BT-474_Trastuzumab_2h_R1 2 REEEMMIR 8 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 120.31 0.0024487 692190000.0 949820.0 885490.0 946500.0 840400.0 883140.0 858700.0 1002940.0 986190.0 1462260.0 1013580.0 False True 944706.2746549229 914962.9993599919 1079758.9728745176 946794.553831846 995602.6442191154 799340.0901623742 954423.9605971351 1059784.5055713502 1101905.616280136 948892.4566305032 0.9955883494000518 0.9642430951648682 1.1379150137927312 0.9977891037240334 1.049226007923468 0.8423927122371841 1.0058294319108345 1.1168647175620114 1.1612544799786682 1.0 19.855885062128227 1.7629335347536836 6.600353024723718 1.1034912721527583 0.9986430359092802 0.2262526635738752 0.07864267193421803 0.22652016269013017 26.753937982395733 0.03813836091018066 0.020685193804477583 57.934002635203306 -1.7629335347536836 -0.10484823624347817 REEEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 REEEMR 6 1 Q15233;Q15233-2;H7C367;P49755 Q15233;P49755 NONO;TMED10 Non-POU domain-containing octamer-binding protein;Transmembrane emp24 domain-containing protein 10 0 107.59 0.049921 73494000.0 27582.0 30194.0 34968.0 41002.0 40924.0 31338.0 45616.0 27697.0 37426.0 39554.0 False True 27433.50157664829 31198.989037341544 39891.190452695366 46192.84899597026 46135.42882444808 29171.67782171708 43409.379809957674 29763.89078251624 28202.863782706485 37029.629856116866 0.7408527085807906 0.8425412070973708 1.0772775911532857 1.247456406544116 1.245905751791549 0.7877928549398734 1.172287705241184 0.803785803373338 0.7616296434042723 1.0 15.176392508118848 1.6521983484568534 9.579644021656408 0.83754154357341 1.0204319363695544 0.14022970366079912 0.18060729368126888 0.20939793705289664 32.77085191678191 0.09116701178544682 0.048496043227445045 44.895038513343145 -1.6521983484568534 0.18289039279614439 REELAPYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 REELAPYPK 9 1 O60828-2;O60828;A0A5H1ZRR1;O60828-3;O60828-5 O60828-2 PQBP1 Polyglutamine-binding protein 1 0 ; 93.096 0.015442 535550000.0 380020.0 369770.0 415300.0 376480.0 373370.0 408980.0 392920.0 372790.0 592020.0 421710.0 False True 377974.0145441907 382077.5709193151 473770.6301476891 424142.329398636 420916.45636262815 380708.17523536424 373912.9584998373 400609.4827892631 446124.60366156895 394796.10675590485 0.9573904303415157 0.9677845459493009 1.2000387593503112 1.0743326039455485 1.0661616190224312 0.9643159309844691 0.9471039660758884 1.0147250085142114 1.1300126724334685 1.0 18.590748237301934 2.7678328191023747 24.331929890043373 1.0069967238361748 1.057737772981116 0.06596890368567576 0.07707625540897424 1378.6602088131172 1145980.982537805 0.02484019478426723 0.02634198267369656 585.9125750805302 -2.7678328191023747 0.05074104914494115 REELITNWEQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 REELITNWEQIR 12 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 150.26 0.00010199 309403000.0 87063.0 95602.0 81841.0 87598.0 83917.0 84945.0 85761.0 88003.0 105179.0 92840.0 False True 86594.26248160869 98784.05477737072 93363.50142527565 98687.89781837475 94603.33253497252 79072.95208902161 81612.41279116504 94570.23073017923 79259.04477639307 86914.87171567703 0.9963112269771606 1.1365610145582579 1.0741947791247268 1.1354546796227303 1.0884596694159154 0.9097747086101842 0.9389925012849606 1.0880788162415407 0.9119158000448034 1.0 16.407315432478367 2.788602876682617 14.582534514579814 0.981945603635891 1.0910747252106772 0.4726524361372826 0.06071117180636704 3.785382074103515 1102.2171343737978 0.018794291267645806 0.019932273062347607 614.6146057942689 -2.788602876682617 0.10912912157478616 REELLK ddPTM_BT-474_Trastuzumab_2h_R1 1 REELLK 6 1 E7ERS3;Q86VM9;H3BRH3;Q9BSJ1 E7ERS3 ZC3H18;TRIM51 Zinc finger CCCH domain-containing protein 18;Tripartite motif-containing protein 51 0 134.66 0.022344 557820000.0 357200.0 394720.0 348960.0 323260.0 305450.0 398040.0 409000.0 358500.0 550040.0 434410.0 False True 355276.87488865096 407858.01658672094 398090.5347853057 364184.6828554058 344347.2469560083 370524.4316853743 389215.1074682716 385253.0904261136 414490.01215838874 406685.5818828879 0.8735910263741757 1.002882902065042 0.9788656213043291 0.8954944534037574 0.846716142140414 0.9110832746268176 0.9570418151198504 0.9472996033998908 1.0191903293924696 1.0 18.633554318655158 1.460428396957067 1.806713961372496 1.0102915672091866 0.9228406282923549 0.3588751400316077 0.04494296883417357 0.4092946164844107 2.5265788780119993 0.04194746660901113 0.013486296866054438 28.868777743510115 -1.460428396957067 -0.08745093891683164 REEMEQLFHDDQGGVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 REEMEQLFHDDQGGVTR 17 1 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 ;; 236.27 2.2685000000000003e-20 696520000.0 172969.0 224775.0 206438.0 238057.0 200424.0 215299.0 229167.0 194421.0 239979.0 196607.0 False True 172037.75412266256 232256.4999956431 235502.6760087372 268194.9917914657 225946.80839388116 200415.8868893315 218081.31670704528 208929.68226983416 180839.39100385056 184059.37293627884 0.9346861905382121 1.2618564123656448 1.2794929823555792 1.457111297908825 1.2275756718572746 1.0888654225651158 1.1848422236152287 1.1351211238895473 0.9825057432226337 1.0 17.48981169302258 1.5583333046272532 0.9854764800748198 0.9836565386935956 1.2335029557927866 0.2974917064251963 0.12750794177689734 0.6311057723532115 1.1915640457348595 0.11860931852260814 0.04494039410506389 36.168733753393596 -1.5583333046272532 0.24984641709919098 REEQT(ph)DT(ph)SDGESVTHHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 REEQTDTSDGESVTHHIR 18 1 P36915;A2AB27 P36915 GNL1 Guanine nucleotide-binding protein-like 1 2 REEQT(1)DT(0.542)S(0.458)DGESVTHHIR 88.976 0.0013154999999999998 537280000.0 62477.0 74458.0 73830.0 85648.0 86219.0 102390.0 105320.0 79629.0 104220.0 91444.0 True False 62140.630773847224 76936.2895191885 84224.62225813599 96491.02801831262 97198.47858994946 95312.02030013445 100225.26923852903 85571.32032786885 78536.37747645135 85607.96563085272 0.7258744010084504 0.8987047986976228 0.9838409502839748 1.1271267493306452 1.135390589808848 1.113354576268361 1.1707470035055745 0.9995719404997674 0.9173956757144011 1.0 16.38545742198733 4.484888871059465 1.614028776199486 1.0717121089690913 0.6893333905149388 0.6697302716242424 0.07459202504537016 0.3808078380228587 1.3746682660662695 0.021482938092270757 0.19691742018233044 30541.395082687395 -4.484888871059465 -0.3823787184541525 REEQT(ph)DTS(ph)DGESVTHHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 REEQTDTSDGESVTHHIR 18 1 P36915;A2AB27 P36915 GNL1 Guanine nucleotide-binding protein-like 1 2 REEQT(1)DT(0.112)S(0.888)DGESVTHHIR 146.39 9.0978e-08 403260000.0 139610.0 192850.0 151180.0 204050.0 187900.0 235420.0 193970.0 142760.0 223370.0 199630.0 True False 138858.35527212918 199268.89566971327 172464.8299198833 229882.70907828226 211827.95122944503 219145.96951907084 184586.93006264215 153413.47612059137 168323.45650465286 186889.44248815853 0.7429973219644409 1.0662394462562492 0.9228174027583759 1.2300465238578033 1.1334399012018381 1.172596839080175 0.9876798154306535 0.8208782373049873 0.900657919803672 1.0 17.511825546996704 1.9935808481110013 24.232965551937827 0.8915269564006463 1.0548846817085888 0.16702214964010453 0.13505339116582216 288.42081812599685 1088820.2575657733 0.0526925206303762 0.037512236916912495 98.53280540624087 -1.9935808481110013 0.16335772530794257 REEQTDT(ph)SDGESVTHHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 REEQTDTSDGESVTHHIR 18 1 P36915;A2AB27 P36915 GNL1 Guanine nucleotide-binding protein-like 1 1 REEQT(0.147)DT(0.427)S(0.427)DGESVTHHIR;REEQT(0.116)DT(0.447)S(0.437)DGESVTHHIR 155.97 1.143e-08 3019800000.0 811250.0 1052610.0 987450.0 1169150.0 1025170.0 1108920.0 1004290.0 561280.0 1148990.0 1139620.0 True False 806882.3201383491 1087645.487533819 1126474.376930738 1317164.2701243507 1155719.3228413526 1032262.9705168969 955708.6559396363 603165.563722089 865836.8101771995 1066888.4759222304 0.7562949064951432 1.0194556526572713 1.0558501683664743 1.234584776057103 1.0832616050542074 0.9675453375054944 0.8957905887150116 0.5653501535863024 0.811553250145251 1.0 20.02497794544621 2.110216303448378 3.1686518705492066 0.7425126320821066 1.0359226039942024 0.28864053275234847 0.15180406008308264 0.24090367132862875 4.7799602988623935 0.06627769454799018 0.044367325693305905 128.88913333321963 -2.110216303448378 0.29340997191209583 REEQTDTS(ph)DGESVTHHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 REEQTDTSDGESVTHHIR 18 1 P36915;A2AB27 P36915 GNL1 Guanine nucleotide-binding protein-like 1 1 REEQT(0.025)DT(0.31)S(0.664)DGESVTHHIR 125.78 1.3633e-05 1169500000.0 225020.0 296730.0 297140.0 337830.0 338850.0 269130.0 316970.0 201790.0 274760.0 342660.0 True False 223808.51732207247 306606.47867292707 338974.7292128204 380599.2433615096 382000.5389786977 250525.67656387505 301636.95015701285 216848.5944688575 207049.07959537298 320791.1454340144 0.6976767298837714 0.9557822372500457 1.0566835588750574 1.186439366481197 1.190807615533995 0.7809619440241292 0.9402907606720664 0.6759806109220134 0.6454326515628913 1.0 18.291274795111388 2.709917447938224 24.153602170496875 0.7904658082509747 1.025615207258747 0.2863488433622722 0.16343879148564808 582.8107742692285 491459.2970813479 0.05531555975418207 0.052162444986181354 512.7639069502675 -2.709917447938224 0.23514939900777232 REERPENK ddPTM_BT-474_Trastuzumab_2h_R1 6 REERPENK 8 2 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 ;;;;; 132.84 0.00053148 537895000.0 361579.0 338354.0 312399.0 285123.0 332094.0 345609.0 369261.0 374290.0 510160.0 384459.0 False True 359632.2988392032 349615.9083506874 356382.0637792148 321219.5425656798 374384.2024246473 321717.8633060761 351398.4347159944 402221.42040610925 384437.9037937675 359922.49746808986 0.9991937191175098 0.9713644209797799 0.9901633442927836 0.8924686420696962 1.040180052812174 0.893853164415206 0.9763169493097574 1.1175223089292148 1.068113014602126 1.0 18.457326757225264 1.8233850769854605 7.470662313009116 1.0719254174117383 0.9641189256125474 0.42961587288279823 0.0501624812695981 0.20900910604232056 15.934348338617983 0.020381876947609744 0.012460125530317622 66.58632972241332 -1.8233850769854605 -0.10780649179919088 REESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEK ddPTM_BT-474_Trastuzumab_2h_R1 4 REESPMDVDQPSPSAQDTQSIASDGTPQGEK 31 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 REESPMDVDQPS(0.784)PS(0.216)AQDTQSIASDGTPQGEK;REESPMDVDQPS(0.99)PS(0.01)AQDTQSIASDGTPQGEK;REESPMDVDQPS(0.998)PS(0.002)AQDTQSIASDGTPQGEK;REESPMDVDQPS(0.987)PS(0.013)AQDTQSIASDGTPQGEK 298.89 1.0924999999999999e-81 5894540000.0 4189260.0 3680410.0 3443840.0 3158480.0 3328370.0 4253850.0 4257010.0 4043030.0 4931930.0 4506000.0 True False 4166705.4896305464 3802910.2219951744 3928702.7376061063 3558343.2441537525 3752218.19070541 3959791.361985803 4051082.1629425613 4344741.428690353 3716521.9359761565 4218423.222219313 0.987740032266948 0.9015003999514452 0.9313201949280034 0.8435244774424763 0.88948358024906 0.9386899211840003 0.9603308984277985 1.0299444128331403 0.8810215903422071 1.0 22.008272413144038 2.3604617044900444 2.9391742094497038 0.9771241751022053 0.9080780984660157 0.2212371676998579 0.049250347143773535 0.3360154146037903 5.87832045359413 0.01888538374549688 0.01502841213712662 229.33044009987668 -2.3604617044900444 -0.06904607663618956 REESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 REESPMDVDQPSPSAQDTQSIASDGTPQGEKEK 33 2 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 REESPMDVDQPS(0.975)PS(0.025)AQDTQSIASDGTPQGEKEK;REESPMDVDQPS(0.827)PS(0.173)AQDTQSIASDGTPQGEKEK;REESPMDVDQPS(0.499)PS(0.499)AQDT(0.001)QSIASDGTPQGEKEK 211.77 5.268e-28 456372000.0 105016.0 106058.0 98374.0 105943.0 99902.0 125269.0 135493.0 121217.0 216225.0 155758.0 True False 104450.6055243744 109588.07641658523 112224.20411786363 119355.37293741942 112623.92753445459 116609.44888150736 128938.68595647572 130262.82806745387 162939.24601655832 145817.39108886724 0.7163110294623075 0.7515432528195327 0.7696215333428198 0.8185263228628145 0.7723627935834954 0.7996950707370746 0.8842476538199416 0.8933284781378802 1.1174198413497627 1.0 17.153803269145612 1.6849325655694842 1.2348450337279477 1.0523904953634506 0.7691223753291916 0.8386190403335714 0.047631881167305726 0.16005335079024405 0.4619408374337126 0.03921234038251132 0.01480243354765301 48.409719427534306 -1.6849325655694842 -0.28326812003425905 REFEER ddPTM_BT-474_Trastuzumab_2h_R1 1 REFEER 6 1 P25325-2;P25325;B1AH49 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase 0 132.09 0.024125 276180000.0 165540.0 195710.0 151400.0 179830.0 187860.0 157530.0 175560.0 155530.0 224480.0 201800.0 False True 164648.7510332232 202224.08904080658 172715.8040076094 202596.45956161458 211782.85746654333 146640.3218857329 167067.49209567212 167136.43836533735 169159.91187789108 188920.95123032798 0.871521924704303 1.0704164240326088 0.9142226041252479 1.072387462810378 1.121013080271561 0.7761993623828014 0.8843248512547841 0.8846897989708328 0.8954004877503252 1.0 17.527423179127606 2.737314980471756 24.99864585040863 0.8811141852985747 1.0114283855324655 0.333495441865018 0.08578773220231938 122.88287547303015 2466109.5971599263 0.026105025808064838 0.02589296561240356 546.1538261076422 -2.737314980471756 0.13031420023389084 REFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_BT-474_Trastuzumab_2h_R1 1 REFITGDVEPTDAESEWHSENEEEEKLAGDMK 32 2 Q99733;Q99733-2;C9JZI7;E9PNJ7;C9J6D1;A8MXH2;E9PKT8 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 REFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK 123.01 8.259600000000001e-08 106940000.0 52200.0 33351.0 24540.0 39084.0 41381.0 53087.0 54792.0 49332.0 84750.0 56838.0 True False 51918.96099996519 34461.06787389478 27995.018694496233 44032.030392627225 46650.625065596876 49417.22064335615 52141.50163423364 53013.404342820235 63864.4980918178 53210.550178540005 0.9757268215750244 0.6476359999711683 0.5261178206307425 0.827505640232705 0.8767175853109527 0.9287109506957566 0.9799090868123081 0.996294985955637 1.2002224723768138 1.0 15.699424700111248 2.7418528947246092 1.0241205286294843 1.0571114603581113 0.7149801254331545 0.5526639310701498 0.12176674494141776 0.3910989782154255 0.8651813454028101 0.06714365453611501 0.062386344412285355 551.8904699448303 -2.7418528947246092 -0.34213133492495684 REGDVAACYANPSLAQEELGWTAALGLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 REGDVAACYANPSLAQEELGWTAALGLDR 29 1 Q14376;Q14376-2;Q5QPP4;Q5QPP9 Q14376 GALE UDP-glucose 4-epimerase 0 144.28 1.0738e-07 54442000.0 28848.0 31990.0 27787.0 32682.0 28336.0 37248.0 36966.0 28315.0 42891.0 40706.0 False True 28692.68557331412 33054.76781163663 31699.16807106629 36819.53784903906 31944.421639369597 34673.133432360635 35177.81335616659 30428.00908065667 32321.087759954637 38108.10822984008 0.7529286261144464 0.8673946135629348 0.8318221382147921 0.9661864511082704 0.8382578701284341 0.9098623637583318 0.9231057376031341 0.7984654839630795 0.8481420165235599 1.0 15.217810370927817 REGGDGEEQDVGDAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 REGGDGEEQDVGDAGR 16 1 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 ; 170.09 8.6529e-09 1305800000.0 505860.0 599900.0 509030.0 550660.0 536970.0 572100.0 581300.0 505380.0 599360.0 557760.0 False True 503136.50596632896 619867.3088527914 580696.9994319247 620373.4995395583 605349.9466294575 532552.0735785424 553180.2982183535 543094.0218676416 451655.7590125295 522163.27927764 0.9635616404553904 1.1871139420418746 1.1120984996020022 1.188083352773834 1.159311599748833 1.0198956815103397 1.0594009961474549 1.0400846697204698 0.8649703587685245 1.0 18.99414147925957 1.8494645665355196 1.129770398928757 0.947316901702044 1.1218920872109952 0.42512847698262035 0.07508872626489295 0.44427875353781415 1.047038206862037 0.0596177542809655 0.025076503728756982 70.70735092133958 -1.8494645665355196 0.17457518550895124 REGS(ph)YDR ddPTM_BT-474_Trastuzumab_2h_R1 4 REGSYDR 7 1 Q9HCD5;Q5JY17 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 REGS(1)YDR;REGS(1)YDR;REGS(1)YDR;REGS(1)YDR 94.692 0.0085837 733525000.0 418430.0 491462.0 444026.0 486849.0 416230.0 341253.0 415362.0 406088.0 532800.0 436568.0 True False 416177.21937194356 507820.0155749477 506541.00125682086 548484.0334822468 469234.423311505 317662.9833331551 395269.35322307167 436392.34863308177 401498.5791542249 408705.85647533066 1.0182805378935496 1.2425073130940063 1.2393778881105793 1.342001894008468 1.148098114761974 0.777241085001015 0.9671242703294367 1.0677418532646406 0.9823656128070658 1.0 18.640703390776498 2.9834537009322726 24.089071520567973 0.9714399060417142 1.2186555213214572 0.5817225948297539 0.10212918680519209 329.84437562287786 480207.76623770624 0.03169279548817482 0.03446500875978613 962.6173852285206 -2.9834537009322726 0.247215615279743 REGT(ph)PPPPPPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 REGTPPPPPPSR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 REGT(1)PPPPPPSR;REGT(1)PPPPPPSR 71.98 0.025272 613380000.0 403269.0 488280.0 421280.0 433510.0 399710.0 430990.0 426740.0 368820.0 423650.0 408170.0 True False 401097.8445113983 504532.10462850676 480592.5621685968 488392.3215512189 450610.699233217 401196.67574133136 406096.9558948913 396343.2212300121 319247.13411915756 382120.24114808213 1.049663957361426 1.3203490689544148 1.257699829573681 1.278111622885618 1.1792379746211687 1.0499225964474794 1.0627465184120344 1.0372212161260992 0.8354625056238266 1.0 18.543667154614642 2.398138808557033 1.0263429025171913 0.9550396080080057 1.2376738390057316 0.6386342181470538 0.08528524501442124 0.33216765519223407 0.6927402860392956 0.05529013106922393 0.03615132760304776 250.11446460921766 -2.398138808557033 0.2826342309977259 RELGSIDGVQQISLEDALSSQEVEVAYICSESSSHEDYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RELGSIDGVQQISLEDALSSQEVEVAYICSESSSHEDYIR 40 1 P53004;C9J1E1 P53004 BLVRA Biliverdin reductase A 0 ; 133.59 3.4245e-09 151768000.0 46561.0 68940.0 62199.0 75148.0 73634.0 70764.0 66745.0 62327.0 65962.0 67764.0 False True 46310.320749413404 71234.62622488991 70956.0785566003 84661.72909490207 83010.85343708844 65872.25124053824 63516.28935933948 66978.15723009313 49706.548945516115 63439.24350432082 0.7299948453240813 1.122879503127085 1.1184887245978512 1.3345324505506722 1.308509510070602 1.0383517772567972 1.0012144825625704 1.0557842989652182 0.7835299760806672 1.0 15.953087946948969 1.8067305314355775 1.4452207972871307 0.9180290527826791 1.1273195984401887 0.17030240718869616 0.16702675742455425 0.6983454511430611 2.7619253947464424 0.1321451359568229 0.05407717078507448 64.08118459259029 -1.8067305314355775 0.2092905456575096 REPAEQPGDGER ddPTM_BT-474_Trastuzumab_2h_R1 4 REPAEQPGDGER 12 1 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ;;; 162.13 0.00010184 1191780000.0 674424.0 730905.0 677593.0 750739.0 701646.0 745531.0 712894.0 653584.0 859335.0 756843.0 False True 670792.9761195505 755232.7310835978 772992.2046560633 845782.4804249969 790996.4591183342 693994.1967612021 678408.5937004557 702357.7569123053 647563.403749053 708540.6317741079 0.9467247833620474 1.065898972078112 1.0909638346647472 1.1936965115285634 1.1163741691676397 0.9794698647324104 0.9574730979108356 0.9912737892725765 0.9139396877319871 1.0 19.43449106234114 2.692355557935729 7.0302570956620585 0.9684612183184887 1.0883680004729674 0.46669688721675484 0.06096167580064855 0.22851448461686075 29.270903840349963 0.020842005522930543 0.019758716777646377 492.44253457701274 -2.692355557935729 0.1199067821544787 REPAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 REPAVK 6 1 Q9UKN8;F2Z356 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 0 85.265 0.088045 61273000.0 125670.0 117560.0 109110.0 102340.0 122060.0 105940.0 123480.0 133290.0 155260.0 136100.0 False True 124993.40668324972 121472.91353347924 124471.7395988789 115296.23350684329 137603.61749369884 98616.61715593567 117506.80066059223 143236.77663290562 116998.2533774116 127413.98147892789 0.9810022827355215 0.9533719307999868 0.976908013972269 0.9048946761459716 1.0799726678069168 0.7739858374353147 0.9222441626629951 1.124184135605201 0.9182528637703793 1.0 16.959164071525244 REPEDEGEDDD ddPTM_BT-474_Trastuzumab_2h_R1 1 REPEDEGEDDD 11 1 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 135.63 0.0023772 293240000.0 194010.0 220370.0 185010.0 198370.0 207320.0 209240.0 220080.0 195290.0 224590.0 195490.0 False True 192965.47171653737 227704.88223352208 211057.79986425216 223483.62166066584 233720.97311808684 194775.7312979797 209433.88961275606 209863.5314625266 169242.80385181546 183013.6608325907 1.0543774210005556 1.244196095513395 1.153235222464155 1.2211308196555584 1.277068455189692 1.0642688114749435 1.1443620583292573 1.1467096527537168 0.9247550323941559 1.0 17.481591815185798 1.295016579457537 5.667678967491381 0.9626487454569169 1.167480905650916 0.57239182246029 0.06938196941004982 0.12166792961345624 7.6760152083044915 0.04906089032540838 0.01691238240706503 19.724980359967834 -1.295016579457537 0.20483216019399897 REPFLLSGGDDGALK ddPTM_BT-474_Trastuzumab_2h_R1 2 REPFLLSGGDDGALK 15 1 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 0 ; 140.8 7.8187e-06 1358260000.0 1076410.0 1148620.0 1004690.0 998150.0 1042260.0 1181260.0 1175060.0 1106120.0 1515760.0 1231870.0 False True 1070614.7281603937 1186851.1223445479 1146141.6190779728 1124515.6876573756 1174985.6330409867 1099602.2765869414 1118217.8586348845 1188664.2911635512 1142221.2581434061 1153251.0019430318 0.9283449364939549 1.029135132200107 0.9938353551368428 0.9750832089135478 1.0188464012269105 0.953480443315721 0.9696222736861946 1.0307073561270303 0.9904359555889893 1.0 20.13727511513994 1.7486026513037576 24.99999999999434 1.0094303935535776 0.9836700676890152 0.1357767155449956 0.029246484420609585 4.949689912211873 12347.673535265205 0.012953769768787643 0.007183265346885875 56.05348916189318 -1.7486026513037576 -0.02576032586456234 REPGSGTES(ph)DTSPDFHNQENEPSQEDPEDLDGSVQGVKPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 REPGSGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQK 41 2 Q9HAF1-3;Q9HAF1-2;Q9HAF1;Q9HAF1-4;B1AK63 Q9HAF1-3 MEAF6 Chromatin modification-related protein MEAF6 1 REPGS(0.131)GT(0.187)ES(0.65)DT(0.016)S(0.016)PDFHNQENEPSQEDPEDLDGSVQGVKPQK 185.06 5.902599999999999e-28 659840000.0 150890.0 139800.0 119010.0 121600.0 126580.0 175670.0 176710.0 168000.0 208880.0 189460.0 True False 150077.62500545513 144453.1584891154 135765.57354653612 136994.54753207095 142699.21270156009 163526.3463826997 168161.86220224516 180537.01308671458 157404.32284860063 177368.50059513352 0.8461345983187097 0.8144239704593791 0.7654435431939437 0.772372473536204 0.8045352597713471 0.9219582159967044 0.9480931599354064 1.0178640090035693 0.8874423717878537 1.0 17.436390294277455 2.620932325472975 2.5133092636367875 0.9693911071884856 0.7959831760108648 0.8042332386856011 0.038486163657784435 0.11950700276748567 1.4805825352089952 0.014049494188162306 0.013000719847255036 417.7652627352846 -2.620932325472975 -0.17340793117762088 REPHPAEAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 REPHPAEAEK 10 1 A0A0A0MQW0;A0A0A0MR39;Q9P2K5-2;Q9P2K5;A0A087WWC8;Q9P2K5-4 A0A0A0MQW0 MYEF2 Myelin expression factor 2 0 ; 125.74 0.00026035 221880000.0 560610.0 525090.0 519610.0 438960.0 344020.0 425830.0 532230.0 436840.0 858890.0 501530.0 False True 557591.7380496266 542567.3032263916 592766.5714689151 494532.29099241726 387828.90783370705 396393.37439599773 506484.0015839565 469439.2190285729 647228.0680363579 469521.9260185646 1.1875733744276296 1.1555739426851361 1.2624896487698372 1.0532677252922662 0.8260080868265405 0.8442489102848086 1.078722789111941 0.9998238485033212 1.3784831595080116 1.0 18.840833005733625 3.600501662926643 5.698729405028908 1.0099800997502697 1.1956490609817565 0.23712206358982058 0.14439181034041043 0.3308621712502533 14.01865845061891 0.03983848572452148 0.06214678590491037 3985.6729843666135 -3.600501662926643 0.1856689612314868 REPLPSR ddPTM_BT-474_Trastuzumab_2h_R1 7 REPLPSR 7 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7;Q96E39;Q8IZ40 P38159;Q96E39;Q8IZ40 RBMX;RBMXL1;RCOR2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;REST corepressor 2 0 ;;;;;; 129.42 0.005871899999999999 7932953000.0 3248117.0 3997650.0 3860743.0 3842960.0 3576695.0 3823690.0 3662890.0 3268543.0 4327574.0 3740716.0 False True 3230629.4989717253 4130709.3636195436 4404302.056220274 4329478.341972437 4032165.907517819 3559367.3102980847 3485702.017101368 3512458.2759850523 3261101.374220652 3501980.3022919046 0.9225150400924326 1.1795352934784245 1.2576604309675405 1.2362943158586495 1.1513959415702395 1.0163870162172592 0.9953516913901876 1.0029920138860549 0.9312163669471222 1.0 21.739739538342445 2.698005129103663 3.577369156158552 0.9874659873010208 1.1633867828833309 0.4572930427589301 0.08727126185377108 0.21846370349145358 5.854948667235964 0.030033981040185 0.029144953061947542 498.8903794191987 -2.698005129103663 0.1759207955823101 REPPPYGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 REPPPYGYR 9 1 Q13573;G3V3A4;G3V5R3 Q13573 SNW1 SNW domain-containing protein 1 0 ; 83.883 0.025443 367050000.0 142039.0 181607.0 151834.0 158434.0 163456.0 154656.0 161248.0 141289.0 196719.0 135734.0 False True 141274.27780601638 187651.6792112503 173210.90743521356 178491.72815539618 184271.1527203838 143964.99474106444 153447.81821282138 151832.7026310047 148240.23834954918 127071.33991227616 1.111771371133296 1.4767427442001937 1.363099716700791 1.4046576378168212 1.4501393693306106 1.1329462240694939 1.2075722056504186 1.1948618999045937 1.1665906604265524 1.0 16.955279151286877 2.7298003638688044 24.974507183543544 1.1613569933783463 1.3702073683691147 0.5074140928866632 0.10765430520716589 530.7447931098424 1513091.5460555854 0.03283179799350025 0.03136576256818379 536.7849907646621 -2.7298003638688044 0.20885037499076842 REPWLLPSQHNDIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 REPWLLPSQHNDIIR 15 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 186.72 2.4029e-07 179710000.0 69408.0 138210.0 162830.0 147470.0 91745.0 104490.0 155240.0 100280.0 189210.0 119060.0 False True 69034.3150399538 142810.23630029088 185755.04865626837 166139.68687956038 103428.1819347813 97266.85224300264 147730.44812561016 107763.40281152223 142581.73078410438 111461.48886760557 0.6193557590277038 1.2812518274354068 1.666540170452137 1.490556860198609 0.9279275109776591 0.8726498562973317 1.325394534260035 0.9668218494687798 1.2792017425270854 1.0 16.766185804161996 3.2291983127762416 24.998121348127604 1.0633537786661553 1.294350433918634 0.10402374065498876 0.28567600462152215 424.2550088205981 1132794.2226735738 0.08469492606403249 0.10252950262431972 1695.1116660500022 -3.2291983127762416 0.2309966552524787 REQEEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 REQEEELR 8 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 123.86 0.0021318 289020000.0 63109.0 79946.0 64017.0 73958.0 75129.0 71337.0 68382.0 59683.0 76700.0 68423.0 False True 62769.22815606905 82606.95428162253 73030.03715426096 83321.0752169154 84696.23282552928 66405.64109923513 65074.10141539213 64136.84852413316 57798.3127273442 64056.18556012257 0.9799089285008146 1.2896015202792301 1.1400934432119068 1.3007498727614835 1.3222178636602415 1.0366780431673908 1.0158909845531492 1.001259253314965 0.902306502048818 1.0 15.967050270116914 2.5751723492320555 5.405950421937868 0.9881074032744089 1.2120800467568837 0.5567182658860235 0.09684113059600993 0.16881253994780032 7.437059347055892 0.031257858461795685 0.02921987078183216 375.9865845000372 -2.5751723492320555 0.2239726434824748 RES(ph)AASGLGGLLEEEGAGAGAAQEEVLEPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 RESAASGLGGLLEEEGAGAGAAQEEVLEPGR 31 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RES(0.998)AAS(0.002)GLGGLLEEEGAGAGAAQEEVLEPGR;RES(0.998)AAS(0.002)GLGGLLEEEGAGAGAAQEEVLEPGR;RES(0.995)AAS(0.005)GLGGLLEEEGAGAGAAQEEVLEPGR;RES(0.933)AAS(0.067)GLGGLLEEEGAGAGAAQEEVLEPGR;RES(0.924)AAS(0.076)GLGGLLEEEGAGAGAAQEEVLEPGR 256.92 1.1429999999999997e-58 1370940000.0 313073.0 321737.0 317481.0 311922.0 360556.0 427641.0 390079.0 312179.0 441894.0 376240.0 True False 311387.44975368 332445.8215508765 362179.565205679 351411.2932179172 406470.66941715655 398079.1842286332 371209.3885235108 335475.38219284156 332995.14477623324 352228.04108473007 0.8840507098603609 0.9438368976162949 1.0282530717608456 0.997681195783568 1.1539986088710585 1.1301745965559664 1.0538893705916352 0.9524380317924246 0.9453964646049567 1.0 18.426150241991866 4.427176528596025 1.9800516662999972 1.03607774705288 0.8765546325535866 0.37090444871955186 0.06414560662003506 0.5169168410277271 3.3384560256497307 0.019147665042521304 0.11958699584898795 26740.931320745774 -4.427176528596025 -0.15952311449929335 RES(ph)ASSSSSVK ddPTM_BT-474_Trastuzumab_2h_R1 3 RESASSSSSVK 11 1 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 RES(0.259)AS(0.259)S(0.061)S(0.14)S(0.14)S(0.14)VK;RES(0.759)AS(0.072)S(0.072)S(0.072)S(0.023)S(0.001)VK;RES(0.975)AS(0.007)S(0.007)S(0.007)S(0.003)S(0.001)VK 191.48 1.9201e-06 229910000.0 792590.0 651040.0 573670.0 560020.0 577480.0 588670.0 639840.0 684550.0 918470.0 708470.0 True False 788322.7835050265 672709.4728380099 654437.7495709715 630918.4745798559 651018.6550078753 547976.6284801264 608888.4947738369 735634.5970744658 692125.3753674563 663254.8380483163 1.188566955387364 1.0142549051244236 0.986706333717384 0.9512459440723977 0.981551309785471 0.8261931870600359 0.918030988760735 1.1091281282457481 1.0435285740306004 1.0 19.339203768528712 4.7728262173062905 2.4771106264116827 0.9786491014013823 1.2465334409197042 0.44668375321463594 0.07031244217264729 0.6402379952282102 4.539553818131233 0.019780105340851763 0.37576310037336647 59268.81133065778 -4.7728262173062905 0.2678843395183219 RES(ph)ASSSSSVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RESASSSSSVKK 12 2 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 RES(0.963)AS(0.024)S(0.01)S(0.003)SSVKK 89.484 0.0074005 109140000.0 327820.0 188880.0 128530.0 111780.0 116230.0 167380.0 193540.0 156520.0 342750.0 169180.0 True False 326055.05354422564 195166.7566196291 146625.9067972128 125931.33653893838 131031.20155081637 155809.41457013853 184177.73080540184 168200.31719245572 258283.85511469684 158382.78755771494 2.0586520705440337 1.232247263917552 0.925769201680341 0.7951074638905998 0.8273070803421009 0.9837521928534143 1.1628645615186384 1.0619860894364122 1.6307570986561768 1.0 17.27305603173301 4.719639696635102 3.1257846233560347 1.0397184485488398 2.1910371649994134 0.6499144847587421 0.2212888520787705 0.20419124329528235 3.136042085426824 0.05564761024042754 0.5641518263496232 52437.22452374492 -4.719639696635102 1.1513187164505736 RES(ph)CGSSVLTDFEGK ddPTM_BT-474_Trastuzumab_2h_R1 5 RESCGSSVLTDFEGK 15 1 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;O15231-2;H7BZT5;O15231-9;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 1 RES(0.987)CGS(0.013)SVLTDFEGK;RES(0.999)CGSSVLTDFEGK;RES(0.996)CGS(0.004)SVLTDFEGK;RES(0.441)CGS(0.221)S(0.338)VLTDFEGK;RES(0.882)CGS(0.113)S(0.005)VLTDFEGK 211.43 8.477799999999998e-10 3185610000.0 3105900.0 2477670.0 2285410.0 2001400.0 2341370.0 3257880.0 2920410.0 2641170.0 3706600.0 3014780.0 True False 3089178.1794979307 2560137.7481668573 2607175.862860174 2254777.0347918333 2639529.5911127483 3032670.4238246097 2779138.611250409 2838267.5169895114 2793158.0958953635 2822374.159316983 1.0945317683341866 0.9070865886847592 0.9237527399595781 0.7988937353853506 0.9352160422810548 1.074510413090842 0.9846811423198981 1.0056312015258724 0.9896484088315598 1.0 21.428477826575193 2.969200727641647 23.17592503705867 1.008212026917989 0.9211090120291051 0.23086159938555761 0.07112209811840846 384.6716110760059 289458.6946903382 0.021806202812360627 0.02316489131566915 931.5383259894986 -2.969200727641647 -0.08710301488888395 RES(ph)CGSSVLTDFEGKDVATK ddPTM_BT-474_Trastuzumab_2h_R1 1 RESCGSSVLTDFEGKDVATK 20 2 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;O15231-2;H7BZT5;O15231-9;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 1 RES(0.853)CGS(0.123)S(0.024)VLTDFEGKDVATK 57.496 0.042918 124720000.0 55767.0 45273.0 46943.0 49350.0 44360.0 72360.0 65653.0 48115.0 109820.0 64753.0 True False 55466.75666829614 46779.8844368936 53552.16636412949 55597.70494003052 50008.98305768055 67357.92351711809 62477.11357118452 51705.585623019426 82756.33251260676 60620.40810216762 0.9149848772844669 0.7716854092775545 0.8834016140880221 0.9171450123913385 0.8249529263049017 1.111142693127293 1.0306283894672512 0.8529402430923354 1.3651563079735787 1.0 15.887515944060203 2.706740579867025 0.7418829712238622 1.071913566192167 0.8384286789655127 0.3410205715100373 0.13288278358794434 0.8837182952165997 1.040461696853481 0.0936888095316537 0.08908597024658971 509.0267197672518 -2.706740579867025 -0.2334848872266544 RES(ph)EDDPES(ph)EPDDHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RESEDDPESEPDDHEK 16 1 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 2 RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK 192.63 1.7628e-09 846280000.0 1123330.0 871970.0 639710.0 720250.0 759330.0 1060400.0 971010.0 922850.0 1385260.0 1038570.0 True False 1117282.1160936966 900992.9943330049 729775.6075410019 811433.5761511045 856026.1745984786 987097.0439131019 924038.5366815821 991717.7531373486 1043881.2345329978 972287.5734354882 1.1491272197852778 0.9266733618217803 0.7505758866817636 0.834561294745318 0.8804248845573428 1.0152315743636278 0.9503757550007323 1.019983984402069 1.0736342446962888 1.0 19.891023557206747 2.735589562803453 24.27493746353117 1.0085111308784231 0.8964388033364996 0.21008056889629245 0.09899333340320461 280.5475587569253 2292198.426151651 0.03307899544249099 0.03243830284588777 543.9883046726496 -2.735589562803453 -0.11207232754192353 RES(ph)KPEEPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RESKPEEPPPPK 12 2 E7EN32;A0A5F9ZHS3;O00255-3;O00255-2;O00255 E7EN32 MEN1 Menin 1 RES(1)KPEEPPPPK 85.619 0.0060379 144150000.0 202170.0 152260.0 147770.0 122940.0 148390.0 182960.0 193290.0 163180.0 262300.0 206580.0 True False 201081.53918319874 157327.88205688618 168574.73156013477 138504.19139467768 167286.5869235622 170312.40584151362 183939.8242604948 175357.32021125016 197659.67963992682 193395.88753796395 1.0397405122884327 0.813501693649005 0.8716562368837509 0.7161692689431624 0.8649955748967182 0.8806413001314777 0.9511051481091451 0.9067272445326802 1.0220469636466591 1.0 17.561197591424957 1.7323001552694564 1.05163396131635 1.0050466001717429 0.8542336810051524 0.3168518597441866 0.07854869281232345 0.5828454433531678 1.2039979397377938 0.06693785039089035 0.026738679863880916 53.9883625018984 -1.7323001552694564 -0.15081291916659045 RES(ph)PPAGQK ddPTM_BT-474_Trastuzumab_2h_R1 3 RESPPAGQK 9 1 J3KPC5;P47736-3;P47736;P47736-4;F2Z357;X6R8W7;P47736-2;A0A0A0MQY8 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 RES(1)PPAGQK;RES(1)PPAGQK;RES(1)PPAGQK 106.67 0.0017754 1163410000.0 1076560.0 1039970.0 995400.0 940800.0 981040.0 1053000.0 1123010.0 1069840.0 1312210.0 1036520.0 True False 1070763.9205770607 1074584.7727748596 1135543.6678281 1059905.1835376027 1105969.628920355 980208.5884953762 1068685.715985193 1149676.8933374437 988833.4282131483 970368.4061905813 1.103461235697694 1.1073987631083386 1.170219125626683 1.0922709115175337 1.1397420009397354 1.0101406664128987 1.1013195701420044 1.1847839294879579 1.0190288780062986 1.0 19.888173053569826 1.1000885617197669 7.4367641844730885 1.000661445483464 1.1147415853451466 0.4612467186381889 0.0452136514399949 0.1894175161277438 11.468002351195134 0.04448102028443869 0.011150176859652862 12.591821591690042 -1.1000885617197669 0.11408013986168264 RES(ph)PS(ph)PAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RES(1)PS(1)PAPKPR 109.84 0.049236 366630000.0 761840.0 698010.0 454170.0 638000.0 636240.0 771840.0 697160.0 737120.0 1001000.0 841110.0 True False 757738.338088382 721242.840894044 518113.18828359235 718770.734584387 717261.3927100697 718484.5175159273 663435.7073901719 792127.6374195175 754316.9627127984 787429.6396895003 0.9622933909208369 0.9159457614250397 0.6579802971194925 0.9128062983097932 0.9108895024486259 0.912442815588248 0.8425333184711948 1.0059662444658162 0.9579483990598081 1.0 19.586791492532267 1.7253567449546434 8.086507925673416 0.985067554307979 0.8713759741303113 0.3024453243347448 0.0794157742173115 0.14669855176675375 27.691702088422893 0.03959314273543147 0.021020989575514 53.13207107786057 -1.7253567449546434 -0.11369158017766767 RES(ph)PSEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RESPSEER 8 1 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 RES(1)PSEER;RES(0.986)PS(0.014)EER 150.09 0.000303 212950000.0 132774.0 154897.0 126127.0 149617.0 132881.0 119518.0 123982.0 126413.0 148231.0 129063.0 True False 132059.15953657805 160052.65300778617 143884.58528446336 168558.49685942338 149802.60770260688 111256.00197510948 117984.51700276608 135846.57997220734 111701.45624363724 120826.08884360667 1.0929689175614308 1.32465309884319 1.1908403777821763 1.3950505099738846 1.2398200515826219 0.9207945323721899 0.9764821333866179 1.1243149660173366 0.9244812714927811 1.0 16.882572470337923 2.7835857104725292 8.79528065531561 1.0063980254880711 1.2582120444565472 0.6640172395242118 0.09175115208444694 0.2519816042085622 47.098723168639765 0.027777761526496327 0.029383170271442376 607.555155478935 -2.7835857104725292 0.2518140189684761 RES(ph)PSEERLEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RESPSEERLEPK 12 2 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 RES(0.948)PS(0.052)EERLEPK 103.13 0.001795 715640000.0 346210.0 330320.0 341450.0 353630.0 360490.0 420090.0 360740.0 348350.0 549210.0 451370.0 True False 344346.0438275469 341314.5015173435 389523.19206339633 398399.5217414992 406396.26470836945 391050.1670854919 343289.6280393751 374345.64588545775 413864.55453695916 422563.1801627007 0.814898363115694 0.8077241878620997 0.9218105370974752 0.9428164602228294 0.9617408325824638 0.9254241387877777 0.8123983445675446 0.8858927219861474 0.9794146152951796 1.0 18.688807538655016 7.9999999680935465 0.020723141195098504 1.59526562205218 9.975730833488344e-06 0.36040278396477254 0.05449594639989438 4083.005065582104 6.5175744939024725 183.92291211791965 339.8365903231675 99999992.65326786 -7.9999999680935465 -1.5952556463213465 RES(ph)PSPAPK ddPTM_BT-474_Trastuzumab_2h_R1 5 RESPSPAPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RES(0.999)PS(0.001)PAPK;RES(0.999)PS(0.001)PAPK;RES(0.999)PS(0.001)PAPK;RES(0.988)PS(0.012)PAPK;RES(0.995)PS(0.005)PAPK 110.8 0.0013647 5571980000.0 6735440.0 6100920.0 5355260.0 4575830.0 4827350.0 5992850.0 6161570.0 5869350.0 7060420.0 5850630.0 True False 6699177.139417734 6303985.434115978 6109234.05924563 5155129.608829581 5442084.408554869 5578578.385151485 5863511.319616825 6307350.700955401 5320474.095780911 5477237.784423652 1.223094085575228 1.1509424425653854 1.11538594811773 0.9411914931810899 0.9935819153280594 1.0185021364265083 1.0705234189926298 1.1515568520491206 0.9713790609769488 1.0 22.385017083059665 4.173919871740461 2.501214839613055 1.0361185887541937 1.2008050810132873 0.5621936827757454 0.05843819368378032 0.24957266716628645 3.0847455130779466 0.01718201406808547 0.053147912979564456 14925.190112284792 -4.173919871740461 0.1646864922590936 RES(ph)PSPAPKPR ddPTM_BT-474_Trastuzumab_2h_R1 12 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RES(0.76)PS(0.24)PAPKPR;RES(0.998)PS(0.002)PAPKPR;RES(0.962)PS(0.038)PAPKPR;RES(0.934)PS(0.066)PAPKPR;RES(0.966)PS(0.034)PAPKPR;RES(0.827)PS(0.173)PAPKPR;RES(0.963)PS(0.037)PAPKPR;RES(0.912)PS(0.088)PAPKPR;RES(0.991)PS(0.009)PAPKPR;RES(0.992)PS(0.008)PAPKPR;RES(0.813)PS(0.187)PAPKPR;RES(0.997)PS(0.003)PAPKPR 166.03 1.6462999999999998e-05 123345926000.0 14313688.0 14428047.0 13210118.0 12774954.0 12588052.0 15114176.0 15824346.0 13774514.0 17655106.0 14595752.0 True False 14236624.694208251 14908275.822456418 15069987.78999596 14392261.866554473 14191065.806970261 14069368.58806332 15058861.92910787 14802438.180244837 13304241.692599885 13664238.611308029 1.0418893506753122 1.091043287996952 1.102877973568508 1.0532794600530437 1.0385551812031626 1.0296489243403595 1.1020637415278816 1.083297694171915 0.9736540813616776 1.0 23.703901737516265 1.2382638068443133 24.99999998767458 0.9868270093808496 1.069419185555515 0.6083861376971391 0.02597128008945754 5.266359074409475 443223.0765059659 0.021593380107387008 0.006684701283313995 17.30867434097065 -1.2382638068443133 0.08259217617466552 RET(ph)DDEGEDD ddPTM_BT-474_Trastuzumab_2h_R1 2 RETDDEGEDD 10 1 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 RET(1)DDEGEDD;RET(1)DDEGEDD 123.2 0.00090574 249110000.0 487720.0 474920.0 375290.0 396570.0 406880.0 306930.0 402530.0 432220.0 496740.0 459980.0 True False 485094.1697107863 490727.42510479776 428127.5699208427 446775.7213387614 458693.756233297 285712.65153550415 383058.0860860718 464474.45116868865 374325.0829749803 430623.6825913088 1.1264920842060926 1.1395737042417418 0.9942034942076443 1.037508477588266 1.0651846955399076 0.6634856908384784 0.8895425439237163 1.07860870162477 0.8692626488224066 1.0 18.716068138617995 2.94214709094201 24.999720596820747 0.9131101889923123 1.0706141298144856 0.3908343403644319 0.10702446728307463 332.1770859890143 143541.8486053504 0.03502104978097384 0.03714552548096917 875.2801731569529 -2.94214709094201 0.15750394082217323 RET(ph)PS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 RETPSPR 7 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RET(1)PS(1)PR;RET(1)PS(1)PR 75.652 0.037124 225788000.0 232660.0 230270.0 165268.0 179181.0 172633.0 169182.0 169160.0 180661.0 202336.0 193182.0 True False 231407.3844109563 237934.3977488457 188536.29786479234 201865.2962281583 194616.78927404332 157486.84655159057 160977.0845460463 194142.84119796974 152473.0039634933 180852.95936856882 1.27953330273883 1.315623468808978 1.0424838969904013 1.1161846448791994 1.076105085333022 0.8708004950620722 0.8900992558157894 1.0734844587326704 0.843077185443017 1.0 17.464457680013727 4.090729374614246 0.7606240356781631 0.9501754315877871 1.3836597896492067 0.6946018073430057 0.08415635860517938 0.7411785778257955 0.5828158420212712 0.035411952577946076 0.23642946684440325 12323.366781333703 -4.090729374614246 0.4334843580614196 RETLFTLDDQALGPELTAPAPEPPAEEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RETLFTLDDQALGPELTAPAPEPPAEEPR 29 1 B4DYU2;Q96MW5 B4DYU2 COG8 Conserved oligomeric Golgi complex subunit 8 0 101.3 0.0010688 73591000.0 17000.0 19470.0 20114.0 22373.0 24101.0 23185.0 25077.0 20796.0 27068.0 20981.0 False True 16908.473888877557 20118.047180136455 22945.876365977874 25205.41950604462 27170.119492181217 21582.27552161947 23863.92970655711 22347.903119948296 20397.4540926174 19641.974617262174 0.8608337103754169 1.0242375103395098 1.1682061917446984 1.2832426472994758 1.38326823150983 1.0987833933280864 1.214945552652558 1.1377625496118928 1.038462501356217 1.0 14.261652351326946 4.500222637407087 2.4017306040863224 1.1807157238204573 0.8536670820345518 0.4419866626139729 0.10706898789596668 0.31550246913075886 3.057789689951998 0.02755121424666658 0.17168453736674294 31638.991907642187 -4.500222637407087 -0.32704864178590554 REVLYDS(ph)EGLS(ph)GEER ddPTM_BT-474_Trastuzumab_2h_R1 2 REVLYDSEGLSGEER 15 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 REVLY(0.015)DS(0.985)EGLS(1)GEER;REVLYDS(1)EGLS(1)GEER 142.43 3.0669e-06 804940000.0 504930.0 558110.0 413640.0 511420.0 534160.0 568160.0 553910.0 542320.0 577460.0 579420.0 True False 502211.5129829966 576686.3539653805 471876.9165766679 576165.7195629268 602182.1097856318 528884.436504779 527115.2571583138 582790.6722451607 435152.7205675648 542440.9195335809 0.9258363351622225 1.063132100102709 0.8699139382449473 1.0621723008255797 1.110134003724165 0.9750083695004823 0.9717468542224932 1.0743855252407482 0.8022121947247857 1.0 19.049106488053877 -0.7317117525868926 5.6355916209847665 0.9999948591558349 0.9940985654923136 0.0 0.09331444089817706 0.0 1.1156239567629485e-10 0.08438538654739733 0.01988982501985413 0.1854762247012962 0.7317117525868926 -0.00589629366352129 REVS(ph)PAPAVAGQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 REVSPAPAVAGQSK 14 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 REVS(1)PAPAVAGQSK;REVS(1)PAPAVAGQSK 200.13 2.0836e-08 416010000.0 567490.0 552510.0 493060.0 518890.0 537040.0 646070.0 619020.0 623590.0 734070.0 646760.0 True False 564434.6968940665 570899.9613506519 562478.5622456522 584581.4207970098 605428.8607145349 601408.701585193 589075.6377139606 670125.4523258593 553168.2845340491 605483.2230809066 0.9322053450499074 0.9428832040064081 0.9289746450505567 0.9654791388313929 0.9999102165604274 0.993270628581613 0.9729016680537266 1.1067613878978033 0.913598037810757 1.0 19.207727460263435 3.316807783703915 1.263345483023789 1.012727218546555 0.9322448488474105 0.24972588226827142 0.04565640143630927 0.5223343740863273 1.7437735060205053 0.016620191239393102 0.027603163408846026 2073.995375594457 -3.316807783703915 -0.08048236969914446 RFDAQTGADR ddPTM_BT-474_Trastuzumab_2h_R1 4 RFDAQTGADR 10 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;;; 178.95 3.4628e-06 1853290000.0 942780.0 1067340.0 1026240.0 1073140.0 989820.0 942350.0 1015290.0 888030.0 1271690.0 1045710.0 False True 937704.1772327061 1102865.7666793452 1170725.671762014 1208999.413968476 1115867.7098772165 877207.5625532923 966176.5439155551 954299.3079249713 958299.0392729659 978971.8925226263 0.9578458629863407 1.1265550881521915 1.1958726095243393 1.2349684635511977 1.1398363103171791 0.8960497939250263 0.986929810033565 0.9747974535468241 0.9788830982711971 1.0 19.9009079133257 2.754563315150843 24.38578218296596 0.968187159572472 1.1401461962974369 0.5602698207628515 0.07227736007563706 443.0381011024173 675124.7678504465 0.023007294225287 0.02432467171440814 568.281234402514 -2.754563315150843 0.17195903672496482 RFDDAVVQSDMK ddPTM_BT-474_Trastuzumab_2h_R1 16 RFDDAVVQSDMK 12 1 P11142;E9PKE3;E9PNE6;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;;;;;;;;;;;;; 261.63 3.6242e-21 60890570000.0 40306104.0 39998340.0 39360190.0 34517621.0 31545227.0 37672459.0 40784100.0 36320883.0 62515570.0 42917876.0 False True 40089100.41449311 41329660.5673929 44901762.62709552 38887548.27942857 35562324.67524089 35068250.580759674 38811217.272608235 39031331.723166816 47109445.43922007 40178820.40983777 0.9977669828424656 1.0286429553136744 1.1175480556442952 0.9678618705766427 0.8851012626177912 0.8728043835794947 0.965962088401812 0.9714404585558717 1.1724944873614394 1.0 25.259931873532665 -0.9599807738138912 5.670858943908114 1.0000000109498872 0.9913436234879636 0.0 0.08781027020616865 1.2469632526778221e-08 2.3146280213977555e-09 0.08808650733532665 0.02076216274661145 0.1096526738230128 0.9599807738138912 -0.008656387461923654 RFDEATQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RFDEATQLR 9 1 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ; 166.66 9.7129e-05 454870000.0 151834.0 260530.0 205847.0 259660.0 160059.0 198242.0 220860.0 149335.0 230628.0 217027.0 False True 151016.54261434323 269201.58355628897 234828.4683458014 292532.92937646044 180441.56490598046 184537.9971514723 210176.15803286707 160479.13600776467 173792.81965687018 203176.1510538373 0.7432788830335068 1.3249664498514708 1.1557875623088112 1.4397995427078718 0.8881040612791574 0.9082660351340828 1.0344528968716162 0.7898522300741939 0.8553800175632761 1.0 17.632371542021183 3.1859657170440148 24.999596512091642 0.9028513977402199 1.1765903160518698 0.32234073404721875 0.17930763144306147 103.34831856609807 49123.43071216793 0.04996637223526053 0.05972129558550106 1534.4958458008448 -3.1859657170440148 0.27373891831164987 RFDEILEASDGIMVAR ddPTM_BT-474_Trastuzumab_2h_R1 37 RFDEILEASDGIMVAR 16 1 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BR70 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 311.7 1.7855999999999994e-57 19113660000.0 6293219.9 7863542.9 7087725.1 7386940.2 7000127.5 7867652.2 8126437.1 6664774.8 8224122.0 7681840.6 False True 6259337.903300857 8125276.17181443 8085615.186469043 8322126.07191995 7891552.244118655 7323779.921875163 7733330.291468591 7162134.138616686 6197397.33068881 7191578.956153387 0.8703704626569011 1.1298320189980164 1.124317098618612 1.157204297228667 1.097332351105781 1.018382745503845 1.0753313477635758 0.9959056533042014 0.8617575317567893 1.0 22.777877127488697 1.5556288790298942 3.4683865246025802 0.9291918311475035 1.0747145185472637 0.30471440342294676 0.0823448312328717 0.2193711867437082 5.955112077265108 0.052920680082260495 0.021299784005538867 35.944204713072054 -1.5556288790298942 0.14552268739976026 RFDSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RFDSEK 6 1 P17980;E9PM69;E9PKD5;R4GNH3 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 ;;; 163.34 0.012696 1681030000.0 2292520.0 2275520.0 2091370.0 1992350.0 1756880.0 1894270.0 2331100.0 2096820.0 3241090.0 2349020.0 False True 2280177.327042918 2351259.30761911 2385816.7174860868 2244581.3057197523 1980608.2541563956 1763323.5735319415 2218335.7873332235 2253295.355836218 2442366.797880943 2199103.532502798 1.0368667474458786 1.0691899098280033 1.0849042267558866 1.0206801419509322 0.9006434780732069 0.8018374521571999 1.0087454976749264 1.0246426885012296 1.11061928726079 1.0 21.068484096351195 3.4745057297261437 24.661530890658103 0.9723896294218232 1.0623047545718145 0.2137952108498593 0.07704718770016598 113.63520337286592 1071444.7621598581 0.023626187195434984 0.032187552246883855 2981.986889561848 -3.4745057297261437 0.08991512514999134 RFDVSGYPTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RFDVSGYPTLK 11 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 168.05 2.9703000000000007e-05 4749400000.0 3364300.0 4334900.0 4016300.0 3875300.0 3631400.0 4325800.0 4589700.0 4196200.0 5754500.0 4363600.0 False True 3346186.9826088725 4479184.525997609 4581760.129694591 4365912.582656543 4093837.2650058884 4026767.62783789 4367678.676643347 4509341.751871851 4336380.581349444 4085111.3121340876 0.8191177000904789 1.096465722413242 1.1215753451038892 1.0687377280732562 1.002136037969365 0.9857179695145887 1.0691700526421262 1.1038479510895245 1.0615085489761333 1.0 21.96194395914579 2.108280323749712 11.661529817962196 1.0716094346976672 1.0259314667151416 0.044567350409875695 0.08196337031169823 1.2632928196661208 127.76534704361937 0.03083865670547979 0.022775133762664428 128.3158554849855 -2.108280323749712 -0.04567796798252566 RFEDLGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RFEDLGSR 8 1 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 123.6 0.0021499 276450000.0 126380.0 204380.0 196130.0 227130.0 191510.0 143080.0 161980.0 111330.0 136220.0 147140.0 False True 125699.58412213811 211182.66474968084 223743.39920747973 255884.63471183626 215897.6633312984 133189.21637409163 154144.40857630962 119638.0099222852 102650.40625448282 137749.39922710822 0.9125236467630359 1.5330931817822506 1.6242785846099606 1.8576098055422934 1.567321995904655 0.9668950799161149 1.1190205506607753 0.868519286425615 0.7451967618765618 1.0 17.071686501153668 2.7325570135530146 16.086194465341602 0.9415898677125397 1.5277500814840221 0.5736217261431604 0.24034694828155242 2.7764623921305254 7437.38947695706 0.07951731012247112 0.07758740873964583 540.2030271839346 -2.7325570135530146 0.5861602137714824 RFEELGVK ddPTM_BT-474_Trastuzumab_2h_R1 4 RFEELGVK 8 1 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 ;;; 124.74 0.0020712 3951960000.0 3915710.0 4084880.0 3712180.0 3563940.0 3105230.0 4015860.0 4573810.0 3342280.0 4819130.0 4305090.0 False True 3894628.25243628 4220842.761437893 4234822.677153015 4015134.4385809996 3500662.6343598124 3738253.0505176117 4352557.3366490435 3591697.905353951 3631519.9845335926 4030335.470427015 0.9663285552811918 1.0472683458756087 1.050737018847797 0.9962283457648738 0.8685784744337712 0.9275290054506413 1.079949142840928 0.891165991443737 0.9010465781769854 1.0 21.942468497749484 3.4659461813013785 24.975068268906853 0.943540911713958 1.0239362989935388 0.251338308069452 0.060663661365447735 283.3168690908554 633179.9604978476 0.016977554385833437 0.023006682817111393 2923.7900330946895 -3.4659461813013785 0.08039538727958073 RFEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 RFEELK 6 1 P53990-2;P53990;P53990-4;P53990-5;J3KR23;P53990-6 P53990-2 IST1 IST1 homolog 0 134.66 0.022344 147460000.0 239880.0 240610.0 212540.0 194620.0 181180.0 222750.0 240800.0 194000.0 304860.0 226920.0 False True 238588.51273317335 248618.55839818326 242463.7845692026 219258.8720451616 204252.19906200524 207351.81679709887 229151.58405466942 208477.2651120394 229731.3379147091 212437.771324014 1.1230983607395963 1.1703124018326556 1.1413402760632072 1.0321087002496554 0.9614683763108963 0.9760590854666897 1.0786762760053776 0.9813568642370383 1.0814053286424221 1.0 17.696680773804804 3.7138347183747773 4.1905012626022975 1.0119698595101996 1.1491354317666094 0.6958045159848536 0.03923192559679945 0.10829476195976642 4.5280187687841105 0.0102732185347514 0.01734732234424175 5174.098812068363 -3.7138347183747773 0.1371655722564098 RFEKPLEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RFEKPLEEK 9 2 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;; 211.78 2.5853e-06 6131310000.0 7037160.0 5347200.0 5388330.0 4881010.0 4623570.0 6472600.0 6455490.0 6203880.0 10066080.0 6910950.0 False True 6999272.712461976 5525178.319549335 6146960.027796043 5498945.365538767 5212354.233453563 6025164.396861516 6143213.286333387 6666845.028264316 7585429.462561472 6469887.254238032 1.0818229804355828 0.8539837098289658 0.9500876578288967 0.8499290867760857 0.8056329312445538 0.9312626573074817 0.9495085532300952 1.0304422266241609 1.1724206565721398 1.0 22.62530914102126 1.7164018268644918 2.3099548572618738 1.0891091104193402 0.9054742074703037 0.43002599592641055 0.08084871938874755 0.23271103871844145 2.6253527923561046 0.05206182581660238 0.022054764145195145 52.04773405595476 -1.7164018268644918 -0.1836349029490365 RFESIPDMLELDHLTVSGDVTFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RFESIPDMLELDHLTVSGDVTFGK 24 1 A0A087WYS1;E7EUC7;Q16851;Q16851-2 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 121.35 8.2993e-05 277310000.0 141260.0 176710.0 146650.0 163400.0 171860.0 188010.0 201060.0 165110.0 227200.0 204150.0 False True 140499.47185546136 182591.68552654906 167297.0452953492 184086.42324622057 193745.35230597315 175013.31122793496 191333.95967621222 177431.3466115917 171209.60432402385 191120.9722183916 0.7351337230270801 0.9553723142319712 0.8753463492440846 0.9631932127043978 1.0137315128586868 0.9157200761199006 1.0011144117537099 0.928371934027434 0.8958179855237693 1.0 17.544126572246398 5.358529498851973 1.4955904828928477 0.9522312974599526 2.3844815576385095e-17 0.6630436627401715 0.045345212072319695 3.7731412655138907 2.0604353723376234 0.011541827216443985 8.42571824770158 228312.3997452107 -5.358529498851973 -0.9522312974599526 RFFPYYVYNIIGGLDEEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RFFPYYVYNIIGGLDEEGK 19 1 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 ; 215.81 6.3788e-19 305540000.0 784720.0 790010.0 712460.0 763290.0 657870.0 854670.0 843250.0 793570.0 1411390.0 937220.0 False True 780495.1547105884 816305.0052788709 812768.1751866664 859922.4357381136 741645.8449990139 795588.6745767749 802458.7759721766 852790.2230668083 1063571.846157059 877405.817205588 0.8895486437465776 0.9303619707909911 0.9263309625359184 0.9800737798580406 0.8452711737893986 0.9067510825385351 0.9145810983199234 0.9719450297045251 1.2121777919644792 1.0 19.74288474590204 1.4320963019334558 5.045351809941629 1.1065839614303865 0.9163949792834946 0.6336916284360736 0.05764772086949093 0.11008960783726256 5.142985610879517 0.035988896208004266 0.013545871933600729 27.04558015502142 -1.4320963019334558 -0.19018898214689195 RFPELESLVPNALDYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RFPELESLVPNALDYIR 17 1 Q8WWY3-4;Q8WWY3;E7EVX8;Q8WWY3-3;Q8WWY3-2;E7EU94;E7ESX0;E7EN72 Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 0 ; 116.29 0.00043806 435080000.0 226910.0 350710.0 317730.0 339750.0 357350.0 324510.0 335340.0 305350.0 373810.0 317490.0 False True 225688.34177207126 362383.1703413282 362463.62224133237 382762.31516464753 402856.40432060685 302077.387514373 319118.32307679823 328136.7675358827 281689.5342973734 297227.51638313546 0.7593117370773708 1.2192113797236899 1.2194820541921345 1.2877755055196676 1.3553805826016205 1.0163170327910889 1.0736500003769667 1.1039918898790793 0.9477236082485272 1.0 18.181208156638657 RFPGYDSESK ddPTM_BT-474_Trastuzumab_2h_R1 8 RFPGYDSESK 10 1 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 ;;;;;;; 218.43 1.0882e-08 16901650000.0 18094040.0 18444640.0 16494250.0 16136230.0 15595710.0 19497450.0 19805620.0 18739020.0 26594170.0 19569600.0 False True 17996623.69907685 19058558.692379683 18816497.029408887 18179075.063515045 17581731.225484643 18149637.173560463 18847546.495784227 20137420.8272155 20040393.147120677 18320651.373622514 0.9823135287093455 1.0402773517004742 1.0270648486057803 0.9922723102350332 0.9596673648186033 0.9906654956434424 1.0287596282149836 1.0991651124483877 1.093869030004806 1.0 24.12696746223095 1.963858264830728 4.917962369538561 1.0736557739134787 1.000301048942237 0.43351335277560255 0.03309230278654826 0.16807247276445084 9.86488738603053 0.014764510764465562 0.0091317005806885 92.01492253400541 -1.963858264830728 -0.07335472497124162 RFPQHTIMAGNVVTGEMVEELILSGADIIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RFPQHTIMAGNVVTGEMVEELILSGADIIK 30 1 A0A087WWM4;Q9P2T1;Q9P2T1-3;F8WAN9;H0YNJ6;Q9P2T1-2;H0YNH0;H0YLB8 A0A087WWM4 GMPR2 GMP reductase;GMP reductase 2 0 108.17 0.00017501 85867000.0 60634.0 54896.0 54453.0 58524.0 56848.0 62467.0 62153.0 61773.0 86876.0 67421.0 False True 60307.55328107068 56723.18017466726 62119.50908603929 65933.1323993991 64087.255835505486 58148.80332150108 59146.42194248289 66382.81493693816 65466.57387875832 63118.13405797782 0.9554711047965161 0.8986827798579025 0.9841784775985102 1.044598884036013 1.0153540942233412 0.9212693656008255 0.937074944074762 1.0517233427078425 1.0372070539763314 1.0 15.945766935580593 4.102600057045275 6.025852330577025 1.0006989473286279 0.9279907392725704 0.3191486264404263 0.042521157661002985 0.2502948629127225 12.564924722104674 0.011560492454530044 0.025583646340850853 12664.850192087435 -4.102600057045275 -0.07270820805605749 RFPVAPLIPYPLITK ddPTM_BT-474_Trastuzumab_2h_R1 2 RFPVAPLIPYPLITK 15 1 P49756;P49756-2;P49756-3;H0YE46 P49756 RBM25 RNA-binding protein 25 0 ; 124.45 0.0001548 266720000.0 397920.0 515170.0 492090.0 467480.0 493370.0 500450.0 514520.0 542650.0 651810.0 532230.0 False True 395777.642933068 532317.1220231581 561371.9946770439 526662.9200681958 556197.7450669039 465855.0694325842 489630.70194272714 583145.2985208667 491180.15930652287 498262.62573497166 0.7943153318980501 1.0683464794052209 1.1266588455214388 1.0569986446230675 1.116274262486523 0.9349588858795418 0.9826759557181078 1.170357294329847 0.9857856759414743 1.0 18.926546837161855 4.739994449328623 24.551670739023105 1.0576754731519131 0.7943152229798324 0.5351512716659623 0.0708399171369453 73.8878706116148 1265025.6734453477 0.017038014706545233 0.10738858732702283 54953.38502793072 -4.739994449328623 -0.26336025017208076 RFS(ph)DQAAGPAIPTSNSYSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RFSDQAAGPAIPTSNSYSK 19 1 Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7 Q7KZI7-12 MARK2 Serine/threonine-protein kinase MARK2 1 RFS(1)DQAAGPAIPTSNSYSK 156.43 9.8e-09 335220000.0 267580.0 279750.0 246740.0 277660.0 268000.0 289480.0 279550.0 274780.0 311200.0 315020.0 True False 266139.3790109327 289061.3096375537 281478.84729747334 312811.727530879 302128.21143954864 269468.9289626228 266027.0985152947 295285.47890456783 234508.92986635625 294915.1538978093 0.9024269370137296 0.9801507512147579 0.9544400943025405 1.060683804804656 1.0244580769974228 0.9137167941393619 0.9020462156633547 1.0012557001627895 0.7951742281361902 1.0 18.169940430073222 2.7232234621917124 24.307233452633167 0.9273770743775606 0.9867640928632185 0.17652580386468686 0.06642611286048283 1067.9489244232254 1692544.7499692808 0.021244300751147017 0.020103073052477417 528.7172283365157 -2.7232234621917124 0.05938701848565797 RFS(ph)DQAGPAIPTSNSYSK ddPTM_BT-474_Trastuzumab_2h_R1 5 RFSDQAGPAIPTSNSYSK 18 1 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 RFS(1)DQAGPAIPTSNSYSK;RFS(1)DQAGPAIPTSNSYSK;RFS(1)DQAGPAIPTSNSYSK;RFS(1)DQAGPAIPTSNSYSK;RFS(1)DQAGPAIPTSNSYSK 175.46 2.0202e-12 3691530000.0 3342270.0 3587300.0 3403630.0 3404350.0 3492200.0 4261930.0 3755890.0 3402050.0 4369300.0 4088950.0 True False 3324275.58968111 3706701.111931357 3882831.5191176985 3835340.3609441267 3936910.970108928 3967312.8106040834 3574203.251806865 3655928.246259859 3292544.5606204104 3827989.7102737795 0.8684128854263186 0.968315328012272 1.014326529848482 1.001920237834135 1.0284539061175686 1.0363958920674161 0.9337024188477342 0.9550517433335486 0.860123670600182 1.0 21.86815552115518 -0.34184527918216107 6.515702713176779 1.0000000000143499 0.9677139643953413 0.029027823309234257 0.05873942665426183 0.0 0.0 0.05793921616055821 0.013656404214587975 0.45515018209444913 0.34184527918216107 -0.03228603561900856 RFS(ph)DS(ph)EGEETVPEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 2 RFS(1)DS(0.996)EGEET(0.005)VPEPR;RFS(0.999)DS(0.993)EGEET(0.009)VPEPR 212.37 6.0827e-10 489700000.0 455810.0 561430.0 492680.0 511820.0 600800.0 588350.0 502980.0 485030.0 536870.0 497300.0 True False 453355.96960525156 580116.8581583981 562045.0615486711 576616.3595219138 677308.3187794058 547678.7493269276 478648.9358298082 521225.4015324351 404565.58218943 465561.8882400501 0.9737823929683329 1.246057447596058 1.2072402740554076 1.238538579052679 1.4548190818192066 1.1763822665925285 1.0281102210475832 1.1195620060370666 0.8689834636567811 1.0 18.82861343582401 1.9064043052300772 1.459661621734877 0.972130369599996 1.2271618966395357 0.41183417901065367 0.12337177049429754 0.4128389168986958 1.639841665480709 0.09026627762726497 0.03989977874435076 80.61285551044986 -1.9064043052300772 0.2550315270395397 RFS(ph)DSEGEETVPEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 RFS(1)DSEGEETVPEPR;RFS(0.968)DS(0.032)EGEETVPEPR;RFS(0.982)DS(0.018)EGEETVPEPR 205.68 2.6195999999999995e-09 3361420000.0 563060.0 684600.0 698990.0 634270.0 734760.0 663470.0 630150.0 564980.0 559710.0 543080.0 True False 560028.5475218475 707386.4971505607 797401.7162700052 714568.5169668322 828327.3307362784 617605.880540387 599667.2370932316 607141.6765103096 421776.9702297501 508420.16944581957 1.1015073381771643 1.39134231814921 1.5683911933296764 1.4054684686205807 1.629218076928693 1.2147548772771553 1.179471769868752 1.1941730737631768 0.8295834736247562 1.0 18.955661738812484 1.815706065253503 1.1412089141532495 0.941685191910915 1.4149086082229871 0.5710441353285434 0.1549806733495611 0.34764869899237294 0.8387290996645783 0.12888380008037503 0.053037217741078516 65.41932598130069 -1.815706065253503 0.4732234163120721 RFS(ph)EGVLQSPSQDQEK ddPTM_BT-474_Trastuzumab_2h_R1 6 RFSEGVLQSPSQDQEK 16 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK;RFS(0.93)EGVLQS(0.07)PS(0.001)QDQEK;RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK 283.75 6.9085e-36 7727490000.0 4401950.0 2914440.0 2936380.0 2567340.0 2209300.0 3696070.0 3651460.0 3589730.0 5324460.0 4648170.0 True False 4378250.390302619 3011445.373583815 3349796.7805275023 2892364.9807646982 2490641.2594529674 3440569.3805129235 3474824.9298682027 3857613.880879593 4012318.177108676 4351519.811101448 1.0061428145479143 0.6920445049798737 0.7697992715054671 0.664679262952175 0.5723612364348954 0.7906592477725739 0.7985313363398573 0.8864980623639082 0.922049847244769 1.0 22.053087933733085 1.6142035605403007 1.3224017853765009 0.9783880526217481 0.7359481317590727 0.4011408646131195 0.10571159877682361 0.4050939382155517 1.358914252389888 0.09102483796662066 0.032746150406603884 41.134247850814766 -1.6142035605403007 -0.2424399208626754 RFS(ph)FCCSPEPEAEAEAAAGPGPCER ddPTM_BT-474_Trastuzumab_2h_R1 4 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 1 RFS(0.962)FCCS(0.038)PEPEAEAEAAAGPGPCER;RFS(0.987)FCCS(0.013)PEPEAEAEAAAGPGPCER;RFS(0.997)FCCS(0.003)PEPEAEAEAAAGPGPCER;RFS(0.989)FCCS(0.011)PEPEAEAEAAAGPGPCER 175.9 7.0745e-13 4380290000.0 1574760.0 1883140.0 1610240.0 1778380.0 1717040.0 1871110.0 1718210.0 1790470.0 2268280.0 2080230.0 True False 1566281.6671322857 1945819.176517829 1836947.7955430145 2003522.7256585895 1935694.8663065797 1741764.5698191666 1635093.61810039 1924083.9632224378 1709292.78739479 1947467.940425494 0.8042657004099772 0.999153380718912 0.9432493123053248 1.0287834187508362 0.9939546762878458 0.8943739373900121 0.8395997613922956 0.9879926253379313 0.8777000904165507 1.0 20.893168147896173 2.7298361370563766 24.63034588663454 0.9182433599155885 0.9599669769867432 0.04913542453602904 0.07203904503948244 1516.159075648 4280305.505035902 0.02269799252168804 0.021706466682499117 536.8292079993855 -2.7298361370563766 0.041723617071154684 RFS(ph)FSQR ddPTM_BT-474_Trastuzumab_2h_R1 8 RFSFSQR 7 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 1 RFS(0.976)FS(0.024)QR;RFS(0.998)FS(0.002)QR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(0.997)FS(0.003)QR;RFS(0.984)FS(0.016)QR 174.42 0.00050642 6625290000.0 1738685.0 1736758.0 1562329.0 1793596.0 1618630.0 1672590.0 1613921.0 1484674.0 1991925.0 1706974.0 True False 1729324.1131460622 1794564.940137619 1782291.3431928921 2020665.069698457 1824752.9361283453 1556967.7901533523 1535849.475453057 1595467.9129018127 1501041.774177514 1598033.4579060336 1.0821576385591225 1.1229833338340165 1.1153028958031324 1.2644698142592172 1.1418740496956747 0.9743023729888038 0.9610871836598098 0.9983945611454327 0.9393055988604821 1.0 20.60786618350358 2.7449262381027304 7.142219661741986 0.9751637524374643 1.1493772011364565 0.76559403676689 0.04721881355681978 0.06806582708611832 24.088874956352516 0.015423158291644928 0.01560742879413803 555.8098488161103 -2.7449262381027304 0.17421344869899213 RFS(ph)LDER ddPTM_BT-474_Trastuzumab_2h_R1 1 RFSLDER 7 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 RFS(1)LDER 72.434 0.028768 0.0 111510.0 105950.0 104930.0 120270.0 122460.0 119450.0 103850.0 100680.0 133670.0 127850.0 True False 110909.64254992569 109476.48170187243 119703.23193208998 135496.1696684392 138054.55512271327 111192.70265505489 98826.37875447456 108193.25284268112 100728.81958623356 119690.50354210818 0.9266369450180038 0.9146630556479999 1.0001063441927731 1.1320544709778955 1.153429478840353 0.9290018787157689 0.8256827052257038 0.9039418303108547 0.8415773733527344 1.0 16.868949165262897 2.4907087845836933 24.246938627772167 0.8838116247594394 1.0254963158082084 0.36531953058947797 0.08336128540315385 474.18911081816816 846191.8992291921 0.02973558945772122 0.026931754325332263 309.53430262425144 -2.4907087845836933 0.14168469104876902 RFS(ph)NVGLVHTSER ddPTM_BT-474_Trastuzumab_2h_R1 3 RFSNVGLVHTSER 13 1 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 RFS(1)NVGLVHTSER;RFS(1)NVGLVHTSER;RFS(1)NVGLVHTSER 166.37 2.066e-05 2539530000.0 1098610.0 1484870.0 1560260.0 1717130.0 1430840.0 1579700.0 1466390.0 1351260.0 1522450.0 1564820.0 True False 1092695.2058270448 1534293.00032713 1779931.0459769662 1934518.4819386927 1613048.992746881 1470499.0572138133 1395455.1135462092 1452097.8827592472 1147262.5972848155 1464951.847890196 0.7458915509071031 1.0473334004368802 1.2150099326065897 1.3205338351050653 1.1010935240431095 1.0037866154656254 0.9525603968184517 0.9912256739704716 0.7831401413890072 1.0 20.482421814209438 2.510987664336883 2.672834417073153 0.9376770764692962 1.103249109991576 0.18805117964655227 0.1488270766164445 0.484024165514608 6.944852352874848 0.058493501670360264 0.050836944648927324 324.33040496558397 -2.510987664336883 0.16557203352227978 RFS(ph)QDDTSVFTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RFSQDDTSVFTSK 13 1 D6RA03 D6RA03 RIMS2 1 RFS(0.905)QDDT(0.048)S(0.048)VFTSK 64.565 0.064576 58330000.0 103780.0 84154.0 72635.0 66849.0 80077.0 83272.0 85237.0 75414.0 120000.0 101530.0 True False 103221.26001104206 86955.01501783267 82861.37664526212 75312.07654581754 90274.33129643567 77515.6026412032 81113.76067303945 81041.77562453253 90427.60791761808 95050.26847579378 1.0859649495606545 0.9148318717266674 0.8717637306449505 0.7923394405245376 0.9497535645512207 0.8155221850945523 0.853377501965673 0.852620165351466 0.9513661493828085 1.0 16.536403081416957 4.735599018678735 2.7605748238079784 0.8746357784667764 1.1250631594174836 0.47340895967783125 0.06204066762104922 0.3278702966174401 3.4210556795878104 0.014114236372119148 0.18595889437996593 54400.01490358118 -4.735599018678735 0.25042738095070716 RFS(ph)SSDFSDLSNGEELQETCSSSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RFSSSDFSDLSNGEELQETCSSSLR 25 1 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497 SP100 Nuclear autoantigen Sp-100 1 RFS(0.552)S(0.119)S(0.285)DFS(0.043)DLSNGEELQETCSSSLR;RFS(0.408)S(0.223)S(0.282)DFS(0.086)DLS(0.002)NGEELQETCSSSLR 193.97 1.5571999999999999e-18 488600000.0 105746.0 110209.0 98333.0 108704.0 105365.0 132467.0 126650.0 119336.0 122771.0 131739.0 True False 105176.67528548517 113877.23994225268 112177.43167424187 122465.91525432772 118782.60820271667 123309.86808377685 120523.45565001617 128241.45829592942 92515.73209711586 123331.30423256767 0.85279788404047 0.9233441635183933 0.9095617075670199 0.9929832171675727 0.9631180740513905 0.9998261905286399 0.9772332855796555 1.0398127149786935 0.7501398989721019 1.0 16.91217950880027 4.548972834573574 1.1589441544830112 0.9683362055784895 0.8282480429401459 0.1406798002029388 0.07571737556802047 2.031833913294934 2.9108359892405686 0.021572897139470137 0.31889921773068397 35397.51989923602 -4.548972834573574 -0.14008816263834367 RFSDS(ph)EER ddPTM_BT-474_Trastuzumab_2h_R1 2 RFSDSEER 8 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 RFS(0.194)DS(0.806)EER;RFS(0.332)DS(0.668)EER 154.0 0.00045768 1732490000.0 1378770.0 1659310.0 1513300.0 1648370.0 1499350.0 1586190.0 1699360.0 1407120.0 1700630.0 1561980.0 True False 1371346.855515747 1714539.1302759221 1726359.4861605996 1857053.4729888176 1690283.3351562968 1476540.418789629 1617155.4646143827 1512126.4396105816 1281532.5237744895 1462293.0991216437 0.9378057356213161 1.1725003224769337 1.1805837606684821 1.2699598145572148 1.1559128167749682 1.009743135405989 1.1059037791984112 1.0340789001321768 0.8763855375808505 1.0 20.479801080524634 1.8243589348932685 1.1153573947628976 0.9475430022304807 1.1436499745004054 0.3679068638314368 0.09271317400433389 0.5182711739161039 1.1922506155335002 0.07821431705359717 0.032457308134857844 66.73580982276822 -1.8243589348932685 0.19610697226992468 RFSDS(ph)EGEETVPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 RFS(0.299)DS(0.701)EGEETVPEPR 183.73 5.227e-07 621660000.0 147980.0 185850.0 179310.0 177630.0 197700.0 191070.0 155330.0 178420.0 169580.0 151780.0 True False 147183.29212212362 192035.9049013027 204555.28940954042 200117.93978718575 222875.92314029398 177861.78063040046 147816.09448177664 191734.60639840213 127789.2812555806 142093.27045460424 1.0358216940973677 1.3514778306313533 1.43958463870315 1.4083562096005042 1.5685184979361713 1.2517255747676206 1.0402751235780778 1.3493574029577793 0.8993338026969162 1.0 17.11647870451597 1.559064453318276 0.9586051276127275 0.9743746226290974 1.3550277248360965 0.3854336515903425 0.1673217146575759 0.5473207688847854 0.9818567461987263 0.15335497392408934 0.0587984135364604 36.22967626178131 -1.559064453318276 0.3806531022069991 RFTDEESR ddPTM_BT-474_Trastuzumab_2h_R1 2 RFTDEESR 8 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 125.97 0.001987 242025000.0 78651.0 128342.0 118273.0 135411.0 117414.0 99657.0 100557.0 93230.0 118461.0 93674.0 False True 78227.55175494762 132613.78588562267 134924.810352655 152554.0187159975 132365.9769326983 92767.94615734436 95692.67374495608 100187.29601234753 89267.87384607477 87695.64512165375 0.8920346232293321 1.5122049185185567 1.5385577033555509 1.7395848847952535 1.5093791344949532 1.0578398280627752 1.091190715482036 1.1424432293458247 1.0179282417301336 1.0 16.4202175812002 2.736420072217621 24.75853681515271 1.078949995795129 1.4647573031623655 0.44954355470997465 0.20683664779355185 157.62557788067954 1823159.9536213886 0.0668813822079034 0.0659379595828395 545.0295789307769 -2.736420072217621 0.38580730736723656 RFVEVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RFVEVGR 7 1 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 ;;; 155.0 0.0026311 1341960000.0 724538.0 832620.0 849580.0 835520.0 678620.0 728913.0 797590.0 629249.0 931780.0 826740.0 False True 720637.1679117398 860333.2533705808 969193.4793182595 941296.7463322044 765038.2345041293 678524.9599866377 759007.524610316 676206.7556416788 702155.3042123191 773976.7453922754 0.9310837466395693 1.1115750679751202 1.2522255805334852 1.2161822069410186 0.9884511893395249 0.8766735745306408 0.9806593403857728 0.8736783884882178 0.9072046523264017 1.0 19.56193069479714 3.065074166236912 5.43526426784537 0.9214314467653224 1.134380187442412 0.5371072524733149 0.08764239194215058 0.15078201709612726 8.579262847225715 0.026632275246106236 0.031872032701607864 1161.6469760860678 -3.065074166236912 0.21294874067708958 RFVNVVPTFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RFVNVVPTFGK 11 1 P62861;E9PR30 P62861 FAU 40S ribosomal protein S30 0 149.96 5.4698e-05 507530000.0 1048600.0 1196500.0 1115200.0 1020800.0 1043700.0 1207200.0 1231800.0 1120800.0 1703200.0 1300000.0 False True 1042954.4541104131 1236324.7792004768 1272210.4665078325 1150033.1753350168 1176609.0085054357 1123749.105443132 1172213.1280670362 1204439.7873070803 1283469.1817107277 1217032.8870140042 0.8569648899704811 1.0158515783692628 1.0453377883889454 0.9449483145493534 0.9667848922244421 0.9233514701482355 0.9631729270217722 0.9896526216823762 1.0545887423467457 1.0 20.214936722824426 1.484071445561671 3.8701181845282324 1.0271412947978475 0.9636994421447734 0.2267100801483115 0.049346084771610274 0.3135164130248273 9.575130119924742 0.033441626917088095 0.01276417668733218 30.483964385092843 -1.484071445561671 -0.06344185265307412 RGAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 34 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 RGAAAADLLS(0.079)S(0.451)S(0.451)PES(0.01)QHGGT(0.01)QSPGGGQPLLQPTK 152.85 4.3401e-11 1027900000.0 227510.0 238210.0 261690.0 283260.0 333740.0 373330.0 330770.0 331400.0 337470.0 354340.0 True False 226285.11143873716 246138.67584901443 298533.67734974436 319120.6869566977 376239.810768041 347522.5758242916 314769.3914358931 356130.7508151023 254305.04036632145 331725.71783426334 0.6821452159816974 0.7419945533797597 0.8999413108479507 0.9620016471443334 1.1341894539392263 1.0476202390732958 0.948884498587951 1.0735699153510678 0.7666123749059975 1.0 18.339631339302173 4.157085985785673 1.8774248582967423 1.0039007481809445 0.6806030814014866 0.591455737909764 0.09187515857673632 0.2389500782320798 1.5930454437426127 0.024555456357229662 0.09088888370309546 14357.736734529364 -4.157085985785673 -0.3232976667794579 RGAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 34 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 RGAAAADLLS(0.123)S(0.095)S(0.776)PES(0.006)QHGGTQSPGGGQPLLQPTK 167.66 9.3513e-15 1207200000.0 517720.0 624330.0 652460.0 654280.0 714000.0 773260.0 741640.0 749570.0 797960.0 830330.0 True False 514932.6530440997 645110.4466345453 744320.6967160151 737111.7809151607 804923.66779044 719806.3562582469 705764.0398600707 805506.7196393369 601313.4501161877 777337.628518723 0.6624311420834519 0.8298973611554779 0.9575256225977068 0.9482517684365599 1.0354878475705396 0.9259893382877833 0.9079247086043664 1.036237910127022 0.7735550525992637 1.0 19.568181828786635 4.599712060702656 2.0697274097514438 0.9548200513341543 0.6238613680650595 0.603180600483607 0.07183412412870746 0.31850911609694077 1.8781876279920118 0.0173960010074787 0.17705321259921314 39784.33110945801 -4.599712060702656 -0.3309586832690947 RGADDDRPSWR ddPTM_BT-474_Trastuzumab_2h_R1 6 RGADDDRPSWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;;;;; 140.91 2.1585e-05 808637000.0 497917.0 563384.0 540499.0 586052.0 548480.0 427286.0 545877.0 503837.0 713189.0 577145.0 False True 495236.27019577887 582135.8958671808 616596.561098473 660246.123110734 618325.6769043427 397748.7245430533 519470.84405735397 541435.8753724454 537433.127192984 540311.1119813058 0.9165761340346329 1.0774087057593629 1.1411880071047042 1.2219739858572036 1.1443882296570946 0.7361475929756837 0.9614291332126575 1.0020816958344891 0.994673467332981 1.0 19.04343082702121 RGAGAELK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGAGAELK 8 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 93.598 0.017566 90091000.0 129610.0 138750.0 121400.0 125380.0 99286.0 129040.0 136890.0 134360.0 192820.0 122260.0 False True 128912.19416102472 143368.2098738537 138492.06477228375 141253.09514449906 111929.48358577257 120119.7685274865 130268.10772941749 144386.6254662555 145302.09465562605 114457.26212794795 1.1262910868592861 1.2525916417045444 1.2099893200089662 1.2341121263812596 0.9779150881719532 1.049472670359777 1.1381375485270224 1.2614894221814472 1.2694877717169024 1.0 16.804449476898732 -1.336390282795877 3.2776403795190037 0.9988655404094074 1.170651965381845 0.2312847718447546 0.0922852595247404 23027092.53911472 34437309.356845334 257808.79976050445 0.024152409976839866 0.04609031934313037 1.336390282795877 0.17178642497243757 RGAS(ph)S(ph)SPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGASSSPQR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RGAS(0.906)S(0.931)S(0.163)PQR 55.839 0.084122 142300000.0 394380.0 355950.0 278120.0 337870.0 354990.0 243630.0 340120.0 351880.0 404990.0 408140.0 True False 392256.7018997373 367797.5805736812 317276.8785376239 380644.3073574087 400195.8723094231 226788.43154333177 323667.0962154249 378139.07241043454 305185.6410879677 382092.1557737663 1.0266023417973265 0.9625886713870442 0.8303674224745954 0.996210735042635 1.0473804977728354 0.5935438038084493 0.8470917063449624 0.9896541101312942 0.7987226025877007 1.0 18.543561114381774 RGASS(ph)S(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGASSSPQR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RGAS(0.595)S(0.622)S(0.783)PQR 53.769 0.093187 142520000.0 315030.0 325030.0 274070.0 305980.0 309050.0 206810.0 299790.0 297500.0 360500.0 336550.0 True False 313333.913483123 335848.42706521595 312656.6737408549 344717.0366271637 348405.68561713625 192513.7114783749 285288.01239098574 319700.9606743898 271659.6054525114 315071.09086504905 0.9944863955078947 1.0659449146639297 0.9923369131786569 1.0940928781524186 1.105800232768309 0.6110167421257706 0.9054718781329895 1.0146946830209942 0.8622168562233099 1.0 18.265317861356614 RGAT(ph)PPAPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RGATPPAPPR 10 1 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 RGAT(1)PPAPPR;RGAT(1)PPAPPR;RGAT(1)PPAPPR;RGAT(1)PPAPPR 72.49600000000002 0.028018 1613070000.0 460995.0 512510.0 485385.0 496930.0 484196.0 514240.0 528620.0 469707.0 565050.0 512170.0 True False 458513.05414135964 529568.585531163 553722.9889579491 559841.2870486192 545855.4905454615 478691.79919075227 503048.6310754959 504758.9214638173 425800.9987820848 479482.8721092016 0.9562657621624779 1.1044577738546508 1.1548337201747623 1.1675939217305682 1.138425421004702 0.9983501539586399 1.0491482810692083 1.0527152288953068 0.8880421461334476 1.0 18.871119755239224 2.7326789552503 24.553281729806635 1.009459879956476 1.1106452905326218 0.36346592372602804 0.06945516701640261 459.3482743976609 1917567.1389608856 0.022938381591190656 0.022167233131512514 540.3547272989736 -2.7326789552503 0.10118541057614583 RGAYGGGYGGYDDYNGYNDGYGFGSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGAYGGGYGGYDDYNGYNDGYGFGSDR 27 1 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ; 291.15 2.6991999999999995e-70 841660000.0 189780.0 244694.0 220749.0 221886.0 243540.0 216279.0 239108.0 220145.0 262955.0 254582.0 False True 188758.24556654043 252838.49186935346 251828.54041529552 249976.74484951605 274553.3754253269 201328.1417960031 227541.43255873717 236573.33777365906 198153.2636664772 238334.35880138425 0.7919892310778488 1.060856240539184 1.0566187002233975 1.0488489620492947 1.1519672480547622 0.8447298274932308 0.954715189631381 0.9926111323747797 0.8314087178324467 1.0 17.86262742302412 2.7244603672601726 24.99677811947347 0.9324441868262118 1.027620288725866 0.18865745299696168 0.09998109331758123 1417.0479681221225 2512124.431431677 0.03193122151058906 0.030236747072172606 530.2252032591131 -2.7244603672601726 0.09517610189965431 RGDDSFGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGDDSFGDK 9 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;;; 150.04 0.00013819 4008030000.0 2733120.0 2269640.0 2195910.0 1857940.0 1896470.0 2537980.0 2566780.0 2473670.0 3510830.0 2548630.0 False True 2718405.1855981788 2345183.5953736445 2505075.0408081203 2093155.0135011221 2137974.2132416447 2362535.416362296 2442615.045348196 2658267.816441741 2645632.989211762 2385974.2514080815 1.1393271255940476 0.9829039831379721 1.0499170472312311 0.8772747703651235 0.8960592143774897 0.9901764090572422 1.0237390633644465 1.1141225915883064 1.1088271332561292 1.0 21.186147043385684 1.9820979201463407 3.7362128753117365 1.0849265705750375 0.9831128364187639 0.1967931550776416 0.07512398240239047 0.3222336162996373 9.42319483901077 0.03573706449620154 0.02166710826617054 95.96169714552454 -1.9820979201463407 -0.1018137341562736 RGDDSFGDKYR ddPTM_BT-474_Trastuzumab_2h_R1 3 RGDDSFGDKYR 11 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;; 169.89 9.1987e-06 2431420000.0 673220.0 914370.0 950180.0 785070.0 652030.0 748580.0 889820.0 707070.0 1442980.0 864280.0 False True 669595.4583217744 944804.2527016633 1083957.0848873863 884459.781504959 735062.1556154059 696832.4265677767 846776.0071575015 759835.1538287085 1087376.9139413727 809120.9104526641 0.8275592061354192 1.1676922948055946 1.339672564241313 1.0931120059796087 0.9084701014637899 0.8612216265402566 1.046538281508225 0.9390872785670776 1.3438991625281784 1.0 19.625995781389182 4.755647988522984 23.428610952464584 1.0652671078166365 0.8275587521982433 0.17958442317883072 0.15841471568958612 2821.7550623389375 3868774.670984883 0.0397560996526072 1.054657392601824 56970.23206353479 -4.755647988522984 -0.2377083556183932 RGDDWNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGDDWNDR 8 1 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;A0A087X0F4 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ; 141.02 0.0010266 1647650000.0 761390.0 1127110.0 987350.0 959990.0 992630.0 818210.0 801380.0 900350.0 837010.0 1016770.0 False True 757290.7608383815 1164625.1749976175 1126360.297799955 1081524.635570009 1119035.546721041 761649.0685591658 762614.1878311102 967538.6888846632 630740.1008593795 951878.8680994068 0.7955747167183629 1.2235014496361243 1.1833021359628781 1.1361998588428197 1.175607090590625 0.8001533536298918 0.801167263386993 1.0164514848580724 0.6626264349357421 1.0 19.860418468651574 2.7393785023909514 24.999892964727753 0.8657819528044209 1.1158644043743664 0.4144845166341007 0.14600408566634723 72.46465993012923 2215016.247860584 0.044386832739123326 0.04465193480403916 548.7550152052197 -2.7393785023909514 0.25008245156994546 RGDDWNDREWDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGDDWNDREWDR 12 2 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ; 218.5 1.922e-11 3454300000.0 400600.0 580630.0 474600.0 541890.0 515130.0 509400.0 544280.0 513290.0 580110.0 564230.0 False True 398443.2141108437 599955.918551753 541419.5547028484 610493.2184387661 580728.7520852789 474186.376998618 517951.09704848647 551594.3062338076 437149.6635757454 528220.3583383937 0.7543124906510875 1.1358061253811111 1.0249880493170975 1.1557548072535022 1.0994062287036024 0.8977056062175477 0.9805587552092635 1.0442503730241306 0.827589578241311 1.0 19.010780380462524 2.7435274358814596 24.84738181229239 0.9628765010138074 1.0459640017663385 0.10367816400297158 0.11804432260226774 911.8710916872329 4561797.847982187 0.03573790088768382 0.03684252196646163 554.0225423493961 -2.7435274358814596 0.08308750075253113 RGDIIGVQGNPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGDIIGVQGNPGK 13 1 Q15046;Q15046-2;H3BVA8;J3KRL2;H3BPV7 Q15046 KARS Lysine--tRNA ligase 0 ; 151.66 6.396800000000001e-05 981800000.0 1336740.0 1340370.0 1322520.0 1325730.0 1291500.0 1596760.0 1480190.0 1470770.0 1950070.0 1718650.0 False True 1329543.1403657743 1384983.405179224 1508719.320450087 1493567.2820698405 1455964.8696797667 1486379.7395687331 1408587.5548250906 1580526.3258187338 1469501.378099245 1608964.2855897057 0.826334774658146 0.8607918880384657 0.9376959662576491 0.9282787041618076 0.9049081342076759 0.9238115183047436 0.8754622880325933 0.9823253008002294 0.9133213156192924 1.0 20.61770087203285 7.999999999999999 0.13595832220541765 1.0019798360876773 0.48871974134410273 0.5544799920677677 0.033369535573724456 61.59426159246288 0.5609921112958731 0.1550070817853294 6.1152796607101045 99999999.99999979 -7.999999999999999 -0.5132600947435746 RGDLPFVVPR ddPTM_BT-474_Trastuzumab_2h_R1 5 RGDLPFVVPR 10 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;; 199.68 4.395600000000001e-07 9686080000.0 1849268.0 2199343.0 1964922.0 1941579.0 1995065.0 2105496.0 2183650.0 1827526.0 2417105.0 2113051.0 False True 1839311.746560989 2272546.8022240815 2241565.9381918074 2187382.7023254195 2249124.7020732947 1959948.0173244644 2078018.507146925 1963905.2701089948 1821441.8602976182 1978194.276106025 0.9297932810631626 1.148798593582767 1.133137409842382 1.1057471597942197 1.1369584520791267 0.990776305946311 1.0504622989999743 0.9927767428257059 0.9207598476541111 1.0 20.915752687742348 2.1681591929156943 1.2098981538028981 0.9686854243848344 1.0941392771759655 0.3424264584087072 0.06635251447566254 0.5066363317803124 1.4094307424694856 0.044114411403622114 0.023549301487287615 147.28522852114924 -2.1681591929156943 0.12545385279113108 RGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 RGDS(0.918)ES(0.247)EEDEQDS(0.835)EEVR;RGDS(0.75)ES(0.525)EEDEQDS(0.724)EEVR 139.11 9.4171e-07 454900000.0 492010.0 478980.0 426780.0 440720.0 438840.0 540200.0 477670.0 447170.0 581450.0 524820.0 True False 489361.0728274499 494922.55975047586 486866.9143617402 496515.1068119608 494723.6727915356 502857.2454940193 454563.27722339693 480540.0960832508 438159.43853082566 491325.53827899205 0.9960017029474526 1.0073210553721335 0.9909253161704773 1.0105623830406754 1.0069162586672098 1.0234706041444952 0.9251773860883246 0.9780482768440649 0.8917904818577194 1.0 18.906319704347837 2.2425144865058106 24.999999637942018 0.9494826998718491 1.0055144101639357 0.4962536612616716 0.028184400897813034 79.80589807297594 504610.0668026102 0.009241053477572425 0.007468374612587693 174.78915648375767 -2.2425144865058106 0.056031710292086645 RGDTVATLSER ddPTM_BT-474_Trastuzumab_2h_R1 2 RGDTVATLSER 11 1 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 ; 167.3 3.1118e-05 485360000.0 111352.0 145408.0 114848.0 122921.0 110771.0 121634.0 116823.0 102514.0 156484.0 129355.0 False True 110752.49320437017 150247.81737900773 131017.60012328855 138482.7859966259 124877.03025884413 113225.72787563781 111171.82518280187 110164.11523554432 117920.61497817126 121099.45315361276 0.9145581612485266 1.2406977361691363 1.0819008402712997 1.143545923539082 1.0311940063052107 0.9349813308571489 0.9180208686969226 0.9096995268492489 0.9737501855486564 1.0 16.885832824734518 2.930290039279299 3.193765475211823 0.9368028753939365 1.1042583365358867 0.428496224130258 0.07968763318217904 0.20410439893121382 4.073803272683538 0.02362302769800766 0.026151789860867667 851.7066521831905 -2.930290039279299 0.1674554611419502 RGDTYELQVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGDTYELQVR 10 1 A0A087WU53;Q9H0U3 A0A087WU53 MAGT1 Magnesium transporter protein 1 0 101.39 0.0077206 0.0 30020.0 37476.0 35894.0 33342.0 36974.0 40599.0 33234.0 30843.0 36214.0 35691.0 False True 29858.375655535554 38723.36600527959 40947.5632037591 37563.0937813677 41682.41973793238 37792.48668976617 31626.344453791073 33144.66127758054 27289.544942738536 33413.169823397584 0.8936109867261746 1.1589252444454863 1.2254917273692947 1.1242002473846144 1.247484748027236 1.1310655914872814 0.9465233206232566 0.9919639906289579 0.8167302021021969 1.0 15.028129233565362 2.2444555663375323 6.199551559941009 0.9433746713003747 1.1415064035000813 0.4606595260234585 0.10097851198123098 0.1347024174940331 20.26689923426608 0.03645871536309342 0.028759521454504732 175.57212531496086 -2.2444555663375323 0.1981317321997066 RGDYLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGDYLGK 7 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 0 ;;; 92.439 0.025123 2203860000.0 3657060.0 3788350.0 3352840.0 3439250.0 3497090.0 3923480.0 3857380.0 3389710.0 4856650.0 3939530.0 False True 3637370.7952975607 3914442.939644065 3824890.728592289 3874658.697365755 3942423.682623627 3652259.062478477 3670783.7927774126 3642667.37279861 3659793.683275837 3688105.822598681 0.9862436085780826 1.0613694747201978 1.0370881185554561 1.0505822998960554 1.0689562263822872 0.9902804415479202 0.995303272016999 0.9876797326362902 0.9923233929055498 1.0 21.8144486208474 2.719564307274225 24.72409309294371 0.992161925680226 1.0423199482671062 0.5630766734147932 0.02099411873987578 489.7437417145672 637411.0172643991 0.00652568075916364 0.006161154939082525 524.2812271400978 -2.719564307274225 0.05015802258688018 RGEAGWEGGYPEIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGEAGWEGGYPEIVK 15 1 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 107.34 0.0018685 247140000.0 209470.0 232170.0 209300.0 195900.0 210880.0 254590.0 222160.0 232430.0 333600.0 248100.0 False True 208342.23679430468 239897.6381002711 238767.62073178767 220700.9199139204 237734.3180163134 236990.79254039703 211413.27206638458 249775.1068556253 251388.75001097866 232266.04559090376 0.8969982515708013 1.0328571164586366 1.027991931082063 0.9502074199112456 1.0235431417084573 1.0203419614669598 0.9102203101987292 1.0753836455956232 1.0823310371148964 1.0 17.82541873991368 1.6294270244676068 14.209756223247359 1.0590964525712663 0.9865132928881072 0.28988804111326016 0.05084230137087966 0.14085626082956712 78.64820539888169 0.02290769607236847 0.012460538835311808 42.601709290510385 -1.6294270244676068 -0.07258315968315909 RGEAHLAVNDFELAR ddPTM_BT-474_Trastuzumab_2h_R1 6 RGEAHLAVNDFELAR 15 1 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;;; 200.77 4.380199999999999e-09 8542320000.0 2056432.0 2698384.0 2695689.0 2822152.0 2729393.0 2628916.0 2921272.0 2587935.0 3340920.0 2995828.0 False True 2045360.3986030736 2788198.080232426 3075218.579851177 3179436.1538382354 3076965.020170243 2447185.2247226145 2779958.913017244 2781059.8509676587 2517595.032034404 2804631.6921826075 0.7292795001583051 0.9941405454427449 1.0964785816343658 1.1336376760985503 1.097101280266751 0.8725513697729691 0.9912028451956333 0.9915953879860051 0.8976562017222208 1.0 21.41937989604084 1.4228043654059703 17.049044419836367 0.9474169605769529 0.9967684131464123 0.014506813303719501 0.11445574846366088 18.72320783407686 5873.275098215776 0.07456048802439257 0.028911800826187033 26.473073498726507 -1.4228043654059703 0.049351452569459386 RGEDVETSKK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGEDVETSKK 10 2 O60869;O60869-2;O60869-3 O60869 EDF1 Endothelial differentiation-related factor 1 0 ;;; 149.23 1.3342e-05 1886340000.0 2638480.0 2279890.0 2065280.0 1959560.0 1918410.0 2418410.0 2756220.0 2586770.0 4111130.0 2802860.0 False True 2624274.716842688 2355774.7604273907 2356053.472264433 2207640.095081789 2162708.142193077 2251231.0090247877 2622891.1088171145 2779807.912751908 3097997.097819645 2623979.075150825 1.0001126692261622 0.8977871747288921 0.8978933919772237 0.8413329648807869 0.8242093706744844 0.8579454883402178 0.999585375377413 1.0593864635113852 1.1806485528630115 1.0 21.323324784594003 1.9643292460611772 2.4433098122227865 1.0893108720167504 0.8829997699095761 0.6655695009393224 0.06170062323930989 0.17047236698945442 1.8789153571377952 0.03399170368303577 0.018145550479453484 92.11476448649324 -1.9643292460611772 -0.2063111021071743 RGEEGHDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGEEGHDPK 9 1 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 68.893 0.03686 107840000.0 207996.0 162421.0 152524.0 137225.0 153388.0 164789.0 176474.0 176586.0 239316.0 196801.0 False True 206876.17264652826 167827.0847994321 173998.05343762616 154597.6709300039 172921.05259809498 153397.5243015806 167937.278423853 189763.744005539 180339.77847010575 184240.99169018716 1.1228563782071015 0.9109106679236938 0.9444046726051869 0.8391057251253272 0.9385590633862448 0.832591720736763 0.911508762969807 1.0299756979415238 0.9788254872908981 1.0 17.491234556109347 1.7517958114106298 13.703408960815308 1.0028962415437574 0.9217444737223137 0.1639510910647548 0.07587109722719751 0.3070814602197307 304.33225264459145 0.03500301381025556 0.01927846787130778 56.46714255695916 -1.7517958114106298 -0.08115176782144373 RGEEGHDPKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 6 RGEEGHDPKEPEQLR 15 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;;;; 226.24 5.3528e-13 7780900000.0 3047311.0 3082285.0 2723380.0 2865722.0 2943428.0 3395162.0 3451065.0 3078312.0 5249832.0 3732187.0 False True 3030904.6161640836 3184876.9929443737 3106808.2319566896 3228522.111370901 3318256.1087354 3160462.4422916784 3284123.8016014514 3308031.272791605 3956081.2477447046 3493995.6303739543 0.8674609063090594 0.9115286136186449 0.8891849219697436 0.9240200769871483 0.9497024208871877 0.9045410402970142 0.9399335743444989 0.9467760188462382 1.13225134380643 1.0 21.73644637333106 1.3952694201152276 4.787366605855289 1.0647940940045972 0.9153959426977949 0.7203283118698094 0.037558934035655175 0.1006430182125279 3.592159554388908 0.025216158111859184 0.008994836863516016 24.846740264708508 -1.3952694201152276 -0.14939815130680234 RGEEGHDPKEPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGEEGHDPKEPEQLRK 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;; 158.64 5.642199999999999e-09 1993960000.0 1586590.0 1577990.0 1509700.0 1570850.0 1574160.0 1913610.0 2079990.0 1897520.0 3337590.0 2140920.0 False True 1578047.9757267185 1630512.4432349023 1722252.6374523619 1769719.448937123 1774619.945222687 1781326.644853405 1979372.9373665776 2039122.577811323 2515085.665914695 2004284.6526661702 0.7873372545299608 0.8135134104159991 0.8592854488814055 0.8829681186167742 0.8854131287499631 0.8887593099532152 0.9875707698173241 1.01738172524487 1.2548545250641117 1.0 20.9346559869524 1.9885274702673097 1.2227764555711518 1.1166798526448938 0.8431186651540767 0.722143414847269 0.0678348341882805 0.2360797650227053 0.653183527005326 0.048907371429363744 0.022562037512655717 97.39293869736001 -1.9885274702673097 -0.27356118749081704 RGEGDAPFSEPGT(ph)TSTQRPSSPETATK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RGEGDAPFS(0.12)EPGT(0.462)T(0.12)S(0.12)T(0.12)QRPS(0.031)S(0.028)PETATK 178.88 3.2201e-17 5049700000.0 1264200.0 1163100.0 1231500.0 973380.0 1066400.0 1384300.0 1496400.0 1263400.0 1761300.0 1484100.0 True False 1257393.6876658255 1201813.0803912035 1404884.495610111 1096609.8081971009 1202199.718951994 1288606.5992916888 1424013.415196875 1357681.3234152077 1327251.21521084 1389383.467398066 0.9050011873400068 0.8649973953136707 1.0111567674265436 0.7892780027466068 0.8652756759826603 0.9274664838965554 1.024924686820739 0.9771825815358032 0.9552807028115984 1.0 20.406013404901028 2.443763675613922 5.300157383638695 0.9872631705021635 0.8879559044446546 0.44427681737930846 0.05384365155627726 0.17650862587497268 12.898098005814221 0.018719979472179273 0.01584687617467059 277.82010787744633 -2.443763675613922 -0.09930726605750895 RGEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_BT-474_Trastuzumab_2h_R1 3 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RGEGDAPFS(0.021)EPGT(0.19)T(0.165)S(0.178)T(0.16)QRPS(0.649)S(0.636)PETATK;RGEGDAPFSEPGTT(0.001)S(0.003)T(0.003)QRPS(0.994)S(0.996)PET(0.003)ATK;RGEGDAPFSEPGTT(0.005)S(0.014)T(0.015)QRPS(0.759)S(0.936)PET(0.248)AT(0.023)K 144.55 9.1531e-08 2227040000.0 1151850.0 937190.0 940470.0 912570.0 903150.0 1248130.0 1167010.0 1121230.0 1555250.0 1220200.0 True False 1145648.567582566 968383.8026066824 1072880.001288218 1028101.2684320903 1018160.7991105539 1161849.7108819894 1110557.2678888715 1204901.8760905752 1171979.4767822968 1142325.7913342223 1.0029087816046443 0.8477299645625809 0.93920666890932 0.9000070524813073 0.8913050960018637 1.0170913759418523 0.9721896120298172 1.0547795429561866 1.02595904397242 1.0 20.12354273535888 2.7310810828789247 24.16272906911759 1.0169606756116816 0.9128009089416934 0.5765092546720434 0.04180914009195712 238.9048486464018 771783.004039192 0.012701237406258949 0.012199673025413556 538.3702869893881 -2.7310810828789247 -0.10415976666998816 RGEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RGEGDAPFS(0.027)EPGT(0.149)T(0.027)S(0.039)T(0.219)QRPS(0.481)S(0.058)PET(0.001)ATK;RGEGDAPFSEPGT(0.014)T(0.081)S(0.081)T(0.081)QRPS(0.371)S(0.371)PET(0.002)ATK;RGEGDAPFSEPGTTS(0.001)T(0.004)QRPS(0.7)S(0.294)PET(0.001)ATK;RGEGDAPFSEPGTTSTQRPS(0.735)S(0.265)PETATK 265.68 1.1945999999999996e-53 5184170000.0 1505550.8 1397302.9 1271851.4 1305067.2 1269863.1 1742491.3 1642258.0 1574783.7 2154040.6 1718239.1 True False 1497445.0817752203 1443811.2823390616 1450917.0219894536 1470288.573708447 1431572.6387167177 1622036.977814315 1562815.7065052057 1692302.056283597 1623206.1567952584 1608579.609579497 0.9309113909299592 0.8975690564152383 0.9019864564668587 0.9140291005508884 0.889960702094781 1.0083659945424372 0.9715501161386383 1.0520474375066746 1.0090928339067937 1.0 20.61735590693338 2.7317391396443176 24.343292787734562 1.0117007259045714 0.906497484071536 0.8527479802636844 0.02102630054792344 131.8685073338613 470587.74738787406 0.006876483144589002 0.006617948070108077 539.1866610554141 -2.7317391396443176 -0.10520324183303542 RGEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_BT-474_Trastuzumab_2h_R1 3 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RGEGDAPFSEPGTTSTQRPS(0.324)S(0.675)PET(0.001)ATK;RGEGDAPFSEPGTT(0.015)S(0.002)T(0.001)QRPS(0.173)S(0.808)PETATK;RGEGDAPFS(0.009)EPGT(0.092)T(0.092)S(0.046)T(0.046)QRPS(0.257)S(0.454)PET(0.002)ATK 262.4 2.0389999999999996e-53 43781900000.0 3403380.0 2825900.0 2802480.0 2690960.0 2679700.0 3429270.0 3573910.0 3362420.0 4358400.0 3605550.0 True False 3385056.5802310626 2919958.373207376 3197044.8244071645 3031635.260089653 3020943.911173728 3192212.6365332725 3401026.319637974 3613340.8544228026 3284330.7195678893 3375440.7121333405 1.002848774106195 0.8650598906125976 0.9471488605665875 0.8981450182763258 0.894977624792715 0.9457172881332392 1.0075799309443247 1.0704797277091278 0.9730079713034367 1.0 21.68664444828769 2.2771356046666433 3.3050460129635995 1.0257519547196123 0.9188970653961906 0.5117316547575275 0.041638887215841455 0.16104310847218187 3.6403520430737677 0.015283290139035193 0.011735620185239723 189.29345787024045 -2.2771356046666433 -0.10685488932342169 RGEIIAK ddPTM_BT-474_Trastuzumab_2h_R1 5 RGEIIAK 7 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;;;; 126.52 0.0063237 7521100000.0 7432900.0 7804400.0 7013900.0 6764900.0 6685100.0 7980300.0 8240000.0 7380500.0 9835600.0 7906300.0 False True 7392882.092272827 8064164.73614057 8001396.154088305 7621335.646379178 7536407.859307932 7428640.644605564 7841399.7201431785 7931270.387419611 7411748.17028771 7401713.165076015 0.9988068879992735 1.0894997625941847 1.0810194850351422 1.029671844396703 1.018197772762589 1.0036380063546104 1.0594033496382655 1.0715452234547862 1.0013557679131697 1.0 22.81942779799926 3.7085895564335747 23.946833221542686 1.0323553709105608 1.0597478234559723 0.1352499620155514 0.03218550708340839 850.5218986936753 679566.3483716727 0.008883150927539971 0.013764156503668605 5111.984830775837 -3.7085895564335747 0.02739245254541145 RGERPDYK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGERPDYK 8 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ;;; 113.71 0.0015731 1199170000.0 715093.0 663411.0 564588.0 541609.0 577091.0 731031.0 716802.0 690583.0 898189.0 713737.0 False True 711243.0187423016 685492.2340945813 644077.0829131315 610176.6438675778 650580.1181636596 680496.547631874 682127.5488104458 742117.8101694197 676842.3560659795 668185.6935990109 1.0644391604845256 1.0259007947361956 0.9639192953144138 0.9131842386223772 0.9736516725754432 1.0184243005362084 1.0208652405236944 1.110646063330378 1.0129554741292672 1.0 19.3498895681622 2.2964744792904166 2.491607128796666 1.0539250995996248 0.9859404742067623 0.15627094373379213 0.04724957385727771 0.391256782659612 4.985675910818077 0.021132738865159408 0.015571124028732886 197.91307169637992 -2.2964744792904166 -0.06798462539286243 RGERPDYKGEEELR ddPTM_BT-474_Trastuzumab_2h_R1 5 RGERPDYKGEEELR 14 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ;;;; 196.18 1.1043e-08 2474100000.0 974592.0 975143.0 883423.0 872937.0 940984.0 1097058.0 1072269.0 922151.0 1553490.0 1075720.0 False True 969344.9049593516 1007600.0452686074 1007801.2795496308 983450.734695753 1060812.734750868 1021220.9626567513 1020399.2520046362 990966.5902078971 1170653.2051995036 1007066.6286297741 0.9625429712413894 1.000529673631981 1.0007294958436428 0.9765498197808886 1.053368967447786 1.0140550124734404 1.01323906779932 0.9840129362207316 1.1624386827238107 1.0 19.94172770610862 4.029970638083486 0.40531869990363034 1.0405401410467094 0.9491845230766093 0.19995420044402 0.048177904722273276 6.0753550047469425 1.1997357428690842 0.04145065989361421 0.2565719856722242 10714.468640757295 -4.029970638083486 -0.09135561797010017 RGES(ph)LDNLDSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RGESLDNLDSPR 12 1 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(1)LDNLDSPR 228.17 1.1859e-11 3240270000.0 3386050.0 2778640.0 2457510.0 2791340.0 1878630.0 2641000.0 2539270.0 2443050.0 3621320.0 2975650.0 True False 3367819.883025518 2871125.3526766486 2803506.0469401586 3144723.3577974597 2117862.394987612 2458433.8862452866 2416435.809146596 2625362.7965565333 2728894.209201909 2785741.4694178673 1.2089491864186834 1.0306503256659434 1.006376965600474 1.128864035776661 0.7602508769165068 0.8825061166781648 0.8674300309897586 0.9424287305114325 0.9795934903364032 1.0 21.409629944242717 4.856656715269314 0.729611042171989 0.914277761880716 1.397553879572036 0.4713120694730487 0.08908586280214154 2.8781466079734668 1.0364042120402646 0.034589258378604056 1.189901955702867 71888.05197925607 -4.856656715269314 0.48327611769131995 RGES(ph)PGLHHFHHVDD ddPTM_BT-474_Trastuzumab_2h_R1 3 RGESPGLHHFHHVDD 15 1 Q5VT52-5 Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD 132.74 2.1449e-05 909690000.0 231542.0 236677.0 205338.0 250530.0 231019.0 252058.0 214320.0 94428.0 286254.0 154907.0 True False 230295.4035987346 244554.65087073226 234247.80557010855 282247.0723125804 260437.90029310892 234633.82374070963 203952.52281809293 101474.69685566828 215710.53730708198 145020.70263744507 1.58801743068697 1.6863430284303906 1.6152714840703344 1.9462536533022068 1.7958670421299046 1.6179332983049968 1.4063683261001618 0.699725590968603 1.4874465051128807 1.0 17.145899343369287 2.050304144777514 3.4883069453028868 1.0308224038234428 1.7170280616093367 0.6597416416032416 0.20650168824470616 0.12703182932330817 3.1456069478602307 0.08780763171864377 0.05713235693573638 112.28045006123891 -2.050304144777514 0.6862056577858939 RGEVPAELR ddPTM_BT-474_Trastuzumab_2h_R1 6 RGEVPAELR 9 1 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 ;;;;; 135.86 0.00033513 1388984000.0 1233684.0 1400763.0 1287966.0 1218529.0 1091110.0 1278778.0 1285685.0 1130703.0 1424366.0 1290999.0 False True 1227041.9824191793 1447386.549675884 1469300.4175988387 1372794.646461406 1230056.3909843497 1190379.0867796212 1223491.5047563452 1215081.7994534955 1073350.0848265514 1208606.3385401482 1.0152536382535435 1.1975665719444708 1.2156980902264485 1.1358492858142526 1.0177477576942966 0.9849187852327969 1.012315975633701 1.0053577916206933 0.888089074663492 1.0 20.2049129827134 3.19794772927993 3.4015849261530056 0.9848873976318198 1.1528953944637734 0.6246947650927662 0.0597546641662608 0.1515869278400914 3.6132406442079104 0.017696505306836554 0.02258688186737955 1577.421403334086 -3.19794772927993 0.16800799683195367 RGFAFVTFDDHDSVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGFAFVTFDDHDSVDK 16 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ; 174.52 2.4929e-09 786160000.0 1388400.0 1808670.0 1679360.0 1712400.0 1792050.0 2006050.0 2051050.0 1946930.0 2492170.0 2210290.0 False True 1380925.008665743 1868870.487585897 1915799.290741208 1929189.6644236722 2020256.9451874772 1867376.485233759 1951832.875728115 2092219.8029102182 1878008.0968670868 2069227.3998755289 0.6673626150266571 0.9031730817494086 0.9258524659283218 0.9323236607729627 0.9763339424700265 0.9024510720020855 0.943266494463356 1.0111115883329558 0.9075890339457401 1.0 20.980660769691426 5.274326196837792 1.3203668353981703 0.9549713597929563 6.796748540468156e-17 0.8566225220894734 0.03451344222557983 1.6332433183019246 0.933435338918422 0.009419309341657916 2.967095427501964 188072.88943386433 -5.274326196837792 -0.9549713597929562 RGFCFITYTDEEPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGFCFITYTDEEPVKK 16 2 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 ; 183.7 1.0922e-09 2893800000.0 3854200.0 3901900.0 3430300.0 3223600.0 3341800.0 4119100.0 4303700.0 4032600.0 5968800.0 4591000.0 False True 3833449.4154418744 4031772.382751642 3913256.423297903 3631707.4294768455 3767358.421599563 3834356.3123184307 4095513.5892694476 4333533.089127885 4497869.217822326 4297998.449447148 0.8919150298751205 0.9380581287250696 0.9104834423105169 0.8449764401250524 0.8765378735965248 0.8921260343431824 0.952888568351218 1.0082677181247723 1.0465032202142577 1.0 22.035233531620975 1.9279550349853116 2.125267048372765 1.023577602968576 0.8920267854654989 0.8373938756180674 0.02490969972683694 0.127408077646371 1.0600417466727687 0.016066058399785768 0.007978000669381601 84.71397003366033 -1.9279550349853116 -0.13155081750307707 RGFEGSCSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGFEGSCSQK 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 ; 128.88 0.0005097 239810000.0 248850.0 245160.0 224670.0 213255.0 195800.0 238890.0 241370.0 213609.0 336660.0 256760.0 False True 247510.21924983434 253320.00239765045 256301.58313335237 240253.061134472 220733.96940247633 222376.09658657183 229694.0109770583 229549.58826452345 253694.65401287784 240373.3569767043 1.0296907376212319 1.0538605675095716 1.066264524309122 0.9994995458575554 0.918296321101297 0.9251278901435126 0.9555718398496178 0.9549710132257718 1.0554191912270234 1.0 17.874917470786542 3.519665742555729 4.865276367793474 0.9620360447058737 1.048946979620509 0.47810762092488557 0.03778564254853005 0.16413070281070546 9.047398950818815 0.010460724751544158 0.015946052846414312 3308.763624101743 -3.519665742555729 0.08691093491463542 RGFEVVYMTEPIDEYCVQQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGFEVVYMTEPIDEYCVQQLK 21 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 141.31 2.5175e-07 340710000.0 41107.0 36153.0 29683.0 38289.0 37202.0 25913.0 36130.0 46965.0 50578.0 33227.0 False True 40885.68447941703 37356.33075005 33862.108390738875 43136.38347414037 41939.45418647048 24121.69530264072 34382.253869996755 50469.76678343774 38113.729610477436 31106.42441293412 1.3143807188079346 1.200920113933672 1.0885889018044432 1.3867355148733895 1.3482569912159998 0.7754570240034038 1.1053103826263149 1.6224869214621884 1.225268745276608 1.0 14.92492495062899 RGFGFVTFDDHDPVDK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGFGFVTFDDHDPVDK 16 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;; 157.42 4.4623e-08 6942010000.0 7155950.0 7058100.0 6351590.0 5994270.0 6388970.0 7790900.0 8083590.0 7203520.0 11155920.0 8096000.0 False True 7117423.16030078 7293024.591788444 7245838.662990037 6753143.967393642 7202567.459107966 7252333.420805906 7692555.869387408 7741083.241133393 8406692.997669289 7579306.348665681 0.9390599657650447 0.9622285016982278 0.9560028754169108 0.890997626528517 0.9502937508754955 0.9568597820409598 1.0149419373636566 1.0213445512063506 1.1091639011463454 1.0 22.85363438960292 2.104028979612284 1.6111446171889507 1.0497202075753234 0.9389852144590799 0.6887228772017135 0.03152169890782832 0.2123317209472117 1.051233514180167 0.018588054515839964 0.009941679245307818 127.06588909357308 -2.104028979612284 -0.11073499311624346 RGFS(ph)DSGGGPPAK ddPTM_BT-474_Trastuzumab_2h_R1 3 RGFSDSGGGPPAK 13 1 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 RGFS(0.915)DS(0.085)GGGPPAK;RGFS(0.997)DS(0.003)GGGPPAK;RGFS(0.802)DS(0.198)GGGPPAK 122.01 0.00014701 949280000.0 940740.0 710360.0 618650.0 744890.0 696870.0 833100.0 641480.0 649730.0 1091260.0 866990.0 True False 935675.1603660393 734003.9031783121 705750.5425978041 839192.9976247076 785612.2638279045 775509.7579064561 610449.1617084277 698216.1518620892 822333.595134834 811657.9559325177 1.152794910130632 0.9043266289862354 0.8695171869374014 1.033924440080865 0.9679105072349237 0.955463754452415 0.7521014945354411 0.8602344703932648 1.0131528793924665 1.0 19.630512357953272 2.454751462032327 24.92972028017671 0.8819167793591882 0.9758282203087798 0.10042990528267937 0.09982899141141174 413.8604430402935 461218.58632199466 0.0343163500196898 0.028712838976085925 284.93871540558274 -2.454751462032327 0.09391144094959158 RGGADVNIR ddPTM_BT-474_Trastuzumab_2h_R1 4 RGGADVNIR 9 1 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;; 142.83 0.00016579 2778930000.0 994360.0 1355990.0 1244300.0 1461890.0 1339120.0 1115080.0 1233300.0 1136360.0 1538170.0 1335820.0 False True 989006.476243783 1401123.3074367342 1419486.6243505166 1646965.1241090398 1509648.994413912 1037997.1442159762 1173640.5673364785 1221160.9535191585 1159108.613922021 1250566.8239469603 0.7908465643781778 1.1203905945742243 1.1350745895132754 1.3169749049562918 1.2071717924270955 0.8300213345976307 0.9384868883953822 0.976485966311666 0.9268665949922734 1.0 20.254150719206997 2.7434629351486652 24.977195821374394 0.9369182000363722 1.1268786348263895 0.31632225826110016 0.13140996224075668 503.41787556310413 2564903.7750669206 0.04230031875558601 0.04360025728758633 553.9402659034731 -2.7434629351486652 0.18996043479001734 RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR ddPTM_BT-474_Trastuzumab_2h_R1 7 RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR 32 1 P31942;P31942-3;P31942-4;P31942-5 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ;;;;;; 298.9 1.9716999999999993e-89 6456140000.0 1392045.0 1605471.0 1379806.0 1571272.0 1584117.0 1593375.0 1573925.0 1439803.0 1791061.0 1751494.0 False True 1384550.3843907395 1658908.1317072876 1574070.6913112497 1770194.8740938513 1785844.9101529226 1483228.7366513 1497788.234772617 1547248.4110314923 1349678.0155378077 1639712.153390545 0.8443862427486495 1.0117069195816166 0.9599676919247296 1.079576601559913 1.08912098166755 0.9045665323540638 0.9134458335723974 0.9436097718932808 0.8231188704352689 1.0 20.645011145555337 2.683789438392262 24.999445975218524 0.9157452981377516 1.0003072258741377 0.2190373482019322 0.07538256120520144 462.1177140540865 210925.76678066532 0.024387233184947434 0.02299253176470963 482.82465449935125 -2.683789438392262 0.08456192773638604 RGGGS(ph)GGGEES(ph)EGEEVDED ddPTM_BT-474_Trastuzumab_2h_R1 2 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 RGGGS(1)GGGEES(1)EGEEVDED;RGGGS(1)GGGEES(1)EGEEVDED 135.61 4.9683e-06 1190860000.0 1236450.0 1206560.0 1053000.0 1096170.0 1177530.0 1357610.0 1243340.0 1174130.0 1614140.0 1329960.0 True False 1229793.0905825081 1246719.6202190781 1201253.2471599241 1234945.0096071574 1327481.46573288 1263761.6161701884 1183194.8941799537 1261749.5427113336 1216356.8253678686 1245080.8141639596 0.9877215009599865 1.0013162246470073 0.9647994198404988 0.9918593199401212 1.0661809664332915 1.0150036863420568 0.9502956601049541 1.0133876679792602 0.9769300205502095 1.0 20.24780795532014 3.467230890052661 24.998488404419323 1.0040562689116264 0.9849571855153757 0.08192264019300466 0.02896633191185929 556.9547692623079 1407732.860534412 0.008367156048950658 0.011343148434182042 2932.451851314456 -3.467230890052661 -0.01909908339625066 RGGGSGGGEES(ph)EGEEVDED ddPTM_BT-474_Trastuzumab_2h_R1 9 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGS(0.02)GGGEES(0.98)EGEEVDED;RGGGS(0.071)GGGEES(0.929)EGEEVDED;RGGGSGGGEES(1)EGEEVDED 254.56 7.004099999999999e-31 6960896000.0 5450298.0 5556839.0 4740867.0 4791326.0 5570086.0 6060536.0 5392226.0 5241326.0 7076658.0 5868072.0 True False 5420954.201153038 5741795.0269348845 5408339.865245326 5397907.380334278 6279403.435613702 5641585.411287189 5131383.428076305 5632460.361034149 5332710.458258963 5493566.621050805 0.9867822810012855 1.0451852909060741 0.9844860795027227 0.9825870427510662 1.143046743358249 1.026944023882261 0.9340713933300364 1.0252829809055408 0.9707191750118299 1.0 22.389311672253044 2.434450040114515 24.996217533486067 0.9863424006999506 1.0304256612057858 0.17096137869935368 0.048871587074052966 270.2850244449531 158327.68772682123 0.017192574316855745 0.014384344990402233 271.92556533987533 -2.434450040114515 0.04408326050583522 RGGGSGGGEESEGEEVDED ddPTM_BT-474_Trastuzumab_2h_R1 1 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 0 154.86 3.9584e-10 0.0 198100.0 209810.0 170150.0 200390.0 182790.0 200960.0 201420.0 187170.0 204650.0 214470.0 False True 197033.45161097887 216793.3990171768 194105.6410296876 225759.35345355043 206067.22301878757 187068.10820895617 191676.54510087863 201137.57583000217 154216.74966950473 200782.34098299494 0.9813285901854607 1.0797433576867097 0.9667465778084896 1.12439845231544 1.0263214484397323 0.9316960211396266 0.9546484225777231 1.001769253437668 0.7680792489742211 1.0 17.615272862766467 2.7792230567312752 5.484916908486772 0.9390452888202592 1.0400408889876755 0.3298965048228517 0.07401977460258506 0.2471723087101524 19.632492636694977 0.02217686883569069 0.02317334386110449 601.4825838918493 -2.7792230567312752 0.10099560016741638 RGGPNYQEGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RGGPNYQEGLR 11 1 P53396;P53396-2;P53396-3;K7EIE7 P53396 ACLY ATP-citrate synthase 0 ;; 166.11 3.3365e-05 869080000.0 377142.0 499550.0 424830.0 458860.0 425770.0 441470.0 470080.0 398240.0 615690.0 488560.0 False True 375111.5093764155 516177.2197656481 484642.3713114439 516951.6289520248 479989.2857634953 410952.2180085984 447340.4345200135 427958.6910217446 463961.44932331954 457379.6825227397 0.8201315530839435 1.1285530151199603 1.0596062523773098 1.130246158073109 1.0494328981034953 0.8984925078917709 0.9780505160453273 0.9356749050619835 1.0143901599744816 1.0 18.803032754977135 2.7710748519130757 22.781235120632175 0.9603381935244736 1.0490175595581284 0.14125153144462932 0.08640986078716016 353.7725591322489 247870.888393463 0.02538189371224795 0.026918086335473084 590.3028118057599 -2.7710748519130757 0.08867936603365478 RGGS(ph)DTNLNFDVPDGILDFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGGSDTNLNFDVPDGILDFHK 21 1 G3V207;Q9ULS5;F8VQF2 G3V207 TMCC3 Transmembrane and coiled-coil domains protein 3 1 RGGS(0.999)DT(0.001)NLNFDVPDGILDFHK;RGGS(0.996)DT(0.004)NLNFDVPDGILDFHK 234.55 4.1706e-30 115598000.0 62906.0 77002.0 89379.0 66958.0 96244.0 135761.0 82672.0 86520.0 151932.0 99846.0 True False 62567.321085513664 79564.96502130803 101962.78630380514 75434.87593464168 108500.10291711906 126376.1616170189 78672.83952229086 92976.56173965798 114490.3943844962 93473.74279753881 0.6693571821664669 0.8512012319186067 1.0908174130210377 0.8070167479869854 1.1607548779995562 1.351996377108229 0.8416571024944808 0.994681061836181 1.2248401632154475 1.0 16.51227354181419 5.117479402023957 0.8935462202498744 1.0639786315437023 0.15097911235134998 0.3922969617478017 0.15636747712518562 4.273259646175295 1.6816188673108101 0.05139367453905855 4.45682849003165 131062.78796562112 -5.117479402023957 -0.9129995191923523 RGHT(ph)ASESDEQQWPEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGHTASESDEQQWPEEK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 RGHT(0.632)AS(0.267)ES(0.101)DEQQWPEEK;RGHT(0.534)AS(0.388)ES(0.077)DEQQWPEEK 139.28 4.9167e-07 197460000.0 610380.0 556250.0 584960.0 541670.0 545200.0 777860.0 723940.0 582630.0 959300.0 748060.0 True False 607093.7818995926 574764.444989774 667317.283436533 610245.3664613238 614627.9883464258 724088.3690854833 688920.2564806383 626108.8091351932 722893.3689614249 700318.1703536124 0.8668828078429724 0.8207190236111647 0.9528772944725734 0.8713830260225748 0.8776410699669281 1.0339419991342913 0.9837246635094176 0.894034791099382 1.0322356316935395 1.0 19.41765099435629 2.7640958713118953 24.046356099632277 0.9745825097763248 0.8785271448005728 0.5625030776258166 0.04808547991188622 419.1365271738013 394696.62403410533 0.015278440714677252 0.01619842494758967 580.8926364947613 -2.7640958713118953 -0.09605536497575196 RGHTAS(ph)ESDEQQWPEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGHTASESDEQQWPEEK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 RGHT(0.249)AS(0.72)ES(0.031)DEQQWPEEK 170.0 1.1657999999999998e-09 685050000.0 533180.0 399890.0 453200.0 429640.0 408090.0 586080.0 535470.0 444740.0 786580.0 595170.0 True False 530309.418121867 413200.0969113902 517006.62071498344 484032.3799480189 460057.8425610655 545565.6690839226 509567.27040595474 477928.757143961 592737.8986320001 557185.7410493271 0.9517641587940766 0.7415841190286491 0.9278891806192388 0.8687092010582661 0.8256812920134241 0.9791450658024364 0.9145375282689499 0.8577548238113482 1.063806653622756 1.0 19.08779881281273 1.240483714736887 24.999351699174134 1.0319033669290405 0.8813326013100807 0.4495374394583085 0.06570813921650892 40.464048396519914 526073.877787445 0.047000351362849836 0.015203698689849377 17.397374597848252 -1.240483714736887 -0.15057076561895977 RGIEKPPFELPDFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGIEKPPFELPDFIK 15 2 Q13435;E9PPJ0 Q13435 SF3B2 Splicing factor 3B subunit 2 0 57.703 0.067457 354060000.0 1435300.0 1623700.0 1683200.0 1306600.0 1164300.0 1543400.0 1718000.0 1333100.0 2774000.0 1658600.0 False True 1427572.504276821 1677743.872952622 1920179.929363326 1472015.4260312822 1312566.7036532345 1436708.3907728042 1634893.7766026694 1432582.6913446377 2090384.8696956057 1552746.7280010995 0.9193852922263637 1.080500665496449 1.2366343427013593 0.948007424189684 0.84531925264009 0.9252689861548282 1.0529043450037214 0.9226119530703163 1.3462497340996653 1.0 20.566391097017625 -1.0291545215318003 5.164962524219079 0.9999997978439914 1.0208961960586858 0.0 0.1490717754721964 3.3983487634010294e-07 6.40431852715824e-08 0.1413891643203347 0.03332542284084897 0.09350729169676965 1.0291545215318003 0.020896398214694356 RGILTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGILTLK 7 1 C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;C9JUM1;C9JZR7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;Q6S8J3;A5A3E0;P0CG38;P0CG39 C9JTX5;P60709;P63261;P68133;Q6S8J3 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;POTEE;POTEF;POTEI;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J 0 ; 157.33 0.0023784 15699400000.0 11322800.0 12875900.0 13115100.0 9551400.0 6991200.0 10256000.0 13285800.0 9717900.0 21942000.0 11329500.0 False True 11261839.302881338 13304466.547854079 14961592.081507238 10760606.260672892 7881487.879911091 9547026.86002713 12643115.097315317 10443099.044496315 16534688.107736457 10606441.610327045 1.0617924197985646 1.254376070377843 1.4106137224137232 1.014535002030817 0.7430850203556695 0.9001159117051655 1.192022316419981 0.9845996827369803 1.5589288769229945 1.0 23.338437387175386 3.707984894031873 24.32572232610902 1.0412535924499142 1.2434723348844823 0.1323962553571837 0.21592392548161707 895.5176205089457 712464.0932699353 0.05828249175481642 0.09030529050096445 5104.872435026339 -3.707984894031873 0.20221874243456806 RGLLYDS(ph)DEEDEERPAR ddPTM_BT-474_Trastuzumab_2h_R1 5 RGLLYDSDEEDEERPAR 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR 273.52 9.101499999999999e-36 5156790000.0 709342.0 762288.0 623437.0 654196.0 753082.0 870067.0 845132.0 673655.0 1036740.0 896840.0 True False 705522.9814873046 787660.295267173 711211.5105884528 737017.146523773 848982.5288332772 809921.3162074137 804249.7364422388 723926.5568507775 781249.3186042617 839602.9033766466 0.8403055523627774 0.9381343157573955 0.8470808137134356 0.877816338604473 1.0111715019313396 0.9646480651152326 0.957892991088731 0.8622249326906191 0.930498591015225 1.0 19.679347629966173 3.3687030499091595 24.092597786462743 0.9427264592513771 0.8782083618773202 0.39614919541881344 0.04615468365854748 8.759477999008748 1909.426687919006 0.01363748864679623 0.018465246481351918 2337.238598625436 -3.3687030499091595 -0.06451809737405689 RGLLYDS(ph)DEEDEERPARK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGLLYDSDEEDEERPARK 18 3 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 RGLLYDS(1)DEEDEERPARK 108.55 0.002144 126630000.0 59320.0 69767.0 65393.0 63664.0 71965.0 75173.0 83249.0 78837.0 145890.0 92223.0 True False 59000.62771107156 72089.15241995797 74599.76599385469 71723.85587238302 81129.31618002657 69976.46744820787 79221.92782793684 84720.21726617443 109937.3643258441 86337.24918391735 0.683373958155503 0.8349716153961798 0.8640507625502495 0.8307405731632174 0.9396791876841393 0.8105014707978776 0.9175868883565736 0.9812707500756911 1.2733480087100448 1.0 16.39769550695685 1.596214057148859 2.448244045452223 1.1347429562722002 0.839431483061139 0.6308429635732735 0.09038406195309581 0.15121108806468736 2.026467037658678 0.06175180184434124 0.02333639549607681 39.46517720054242 -1.596214057148859 -0.2953114732110612 RGNDPLTS(ph)SPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 RGNDPLT(0.058)S(0.471)S(0.471)PGR 133.04 0.00018038 978470000.0 381510.0 451260.0 413540.0 416440.0 380160.0 460350.0 454890.0 413120.0 523930.0 464840.0 True False 379455.9925497462 466279.9163075698 471762.8374458835 469161.26130144484 428571.12261514494 428527.0880473378 432885.2328514479 443949.1121808538 394814.47180231364 435173.5132304539 0.871964816362338 1.0714804603942956 1.084079851146761 1.0781016009423168 0.9848281423051303 0.9847269537758003 0.9947416827783951 1.0201657469574732 0.9072575876032983 1.0 18.731231224283466 3.1864020765767647 24.824696012449106 0.986473278537696 1.03374585678702 0.09971937237232886 0.06305977739098423 206.77043954536302 98410.63482516362 0.01816806800788004 0.021715033338234834 1536.0384129270033 -3.1864020765767647 0.04727257824932396 RGNDPLTSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 6 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 RGNDPLT(0.038)S(0.116)S(0.846)PGR;RGNDPLT(0.037)S(0.14)S(0.823)PGR;RGNDPLT(0.017)S(0.141)S(0.842)PGR;RGNDPLT(0.074)S(0.368)S(0.559)PGR;RGNDPLT(0.129)S(0.129)S(0.742)PGR;RGNDPLT(0.169)S(0.169)S(0.662)PGR 91.657 0.005007 15014030000.0 2088469.0 2544734.0 2127923.0 2132828.0 2288630.0 2706834.0 2691952.0 2286558.0 2933250.0 2669250.0 True False 2077224.9149547217 2629433.9328658096 2427516.0621617143 2402843.8061162164 2580073.4647272187 2519716.936781857 2561731.997504717 2457192.5688662566 2210389.8410362788 2498896.1797401044 0.8312569893042783 1.0522381658686124 0.9714353408688576 0.9615620791281222 1.0324852571488412 1.0083319816207483 1.0251454295196643 0.9833111870705309 0.8845464885484632 1.0 21.252859533139553 4.752503129602851 24.559943974236777 0.9919699566064535 0.8312568503014788 0.5386118798462582 0.04434821830058425 1449.4436142478958 2553159.907892117 0.01034431920047097 0.21028957801604073 56559.183282925325 -4.752503129602851 -0.1607131063049747 RGNGLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGNGLIK 7 1 P62249;M0R210;M0R3H0;M0R1M5;Q6IPX4 P62249 RPS16 40S ribosomal protein S16 0 ; 128.48 0.0060179 1604050000.0 1836320.0 2203800.0 2146000.0 1935840.0 1954930.0 2146400.0 2294100.0 2007290.0 2978300.0 2460400.0 False True 1826433.4571543296 2277152.1507747658 2448138.1466336125 2180917.145513852 2203878.747722078 1998024.4200821219 2183125.6186869503 2157084.1726120906 2244337.8721753494 2303375.1655455832 0.7929378958645306 0.9886153957188272 1.0628481991355239 0.9468353996936815 0.9568040763346781 0.8674333430215936 0.9477941984191922 0.9364884213732322 0.9743692238010866 1.0 21.13531798062486 RGNVAGDSK ddPTM_BT-474_Trastuzumab_2h_R1 11 RGNVAGDSK 9 1 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;;;;;; 157.75 0.00010873 23406733000.0 9445760.0 8817770.0 7983720.0 7238526.0 7248951.0 5588747.0 9551300.0 9100910.0 13579650.0 10054430.0 False True 9394905.07768259 9111264.143995464 9107758.380261758 8154922.649417214 8172061.9419512255 5202410.074385345 9089267.129490735 9780066.117684586 10233127.215487354 9412747.669369413 0.9981044226071325 0.9679707205628145 0.9675982720645813 0.8663700479249685 0.8681909075863601 0.5526983466596922 0.9656337818412646 1.039023509523206 1.0871562241902635 1.0 23.166184489976754 2.005699757966355 24.99980271972986 1.0353791022778476 0.8688025267711279 0.30065861155000295 0.11840096573357858 198.98375676460444 872761.2529288235 0.04776939279098981 0.03517770555590284 101.32106777471613 -2.005699757966355 -0.16657657550671967 RGNVCGDSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGNVCGDSK 9 1 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ;;; 156.26 0.00011439 3906380000.0 2708190.0 2578820.0 2594440.0 2195060.0 1622560.0 1609240.0 2671460.0 2335630.0 4271480.0 2717750.0 False True 2693609.405948195 2664654.4647703893 2959714.6007232633 2472954.3709354256 1829183.3983334114 1497997.0265434922 2542231.273831763 2509926.570688826 3218830.9888995606 2544300.868217163 1.0586835226903237 1.0473032093242811 1.163272251994784 0.9719583095800572 0.7189336061560805 0.5887656783268582 0.9991865763946187 0.9864896884021332 1.2651141337522136 1.0 21.278837851353515 3.4885410557064103 24.13136341783713 0.9133387923975775 1.082525932255368 0.15026802618055457 0.1718857477989002 679.6403969336793 1436157.4385177472 0.05053900920110532 0.07351252466445225 3079.9314867770204 -3.4885410557064103 0.16918713985779044 RGPCIIYNEDNGIIK ddPTM_BT-474_Trastuzumab_2h_R1 3 RGPCIIYNEDNGIIK 15 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 ;; 242.91 9.5964e-18 4628410000.0 1640820.0 1819830.0 1652360.0 1604650.0 1651160.0 1856400.0 2005020.0 1779830.0 2365600.0 1904400.0 False True 1631986.0074322391 1880401.9414395357 1884997.9254294143 1807798.5254715285 1861425.4388079285 1728071.4374955522 1908029.522679792 1912649.9523936103 1782629.57741598 1782859.5615611323 0.9153755251497302 1.0547111965414662 1.0572890686795577 1.0139881819342846 1.044067339313031 0.9692695233843288 1.0702074149963088 1.072798998659675 0.9998710026576906 1.0 20.765761633577586 4.744087411983987 24.824641681482262 1.035839145135338 0.915375468287432 0.5220432140843174 0.033042846838861994 426.76620879792847 1916837.7819375354 0.007924668586118571 0.06937519547019685 55473.73556686794 -4.744087411983987 -0.12046367684790593 RGPEEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGPEEDR 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 89.698 0.028352 73497000.0 31739.0 41135.0 39894.0 39002.0 37719.0 28964.0 39973.0 33623.0 41225.0 40979.0 False True 31568.120750534403 42504.153608367415 45510.72843513584 43939.64920103487 42522.29107197142 26961.786853922204 38039.35327831107 36132.11899413453 31065.651136698383 38363.68513611299 0.8228646606427885 1.107926766095702 1.1862971003350016 1.1453448500877472 1.1083995429819593 0.7027944984498424 0.9915458627957351 0.941831288259693 0.8097671281181295 1.0 15.227453688858562 2.7957129074088085 24.99970475289018 0.8988724508084084 1.0862260941018989 0.35857925833729376 0.1228324269472921 307.9231832522306 134691.88519402142 0.037321919438268854 0.03958585660382716 624.7595557339739 -2.7957129074088085 0.18735364329349047 RGPEVTSQGVQTS(ph)SPACK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGPEVTSQGVQTSSPACK 18 1 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5;F8WB05;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 RGPEVTSQGVQT(0.239)S(0.715)S(0.045)PACK 136.11 1.3782e-06 0.0 403030.0 318280.0 299570.0 301160.0 314320.0 431990.0 409470.0 355530.0 537400.0 403800.0 True False 400860.1312608424 328873.7573956771 341746.85209088144 339286.82512136933 354346.7888793993 402127.548095078 389662.3717726976 382061.4539447596 404964.97079106653 378029.1382894266 1.0603947967469531 0.8699693332736822 0.9040225143418263 0.897515008119836 0.9373531111459041 1.0637474928908817 1.0307733777769383 1.010666679488198 1.0712533235494066 1.0 18.52813791535272 2.8021363240382846 6.420552844467837 1.0333471241936116 0.9259137664943924 0.48891290478465155 0.05156014296261344 0.19052108621747982 15.533703345269322 0.01530175288480439 0.016196859933437707 634.068712731776 -2.8021363240382846 -0.10743335769921925 RGPEVTSQGVQTSS(ph)PACK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGPEVTSQGVQTSSPACK 18 1 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5;F8WB05;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 RGPEVTSQGVQT(0.002)S(0.22)S(0.778)PACK 187.24 2.6916e-14 490070000.0 480170.0 363990.0 365470.0 313680.0 348850.0 503300.0 469440.0 434510.0 694770.0 532090.0 True False 477584.8180719026 376105.18711339857 416924.9992778131 353391.85583766515 393273.97970405396 468508.05564076285 446731.39376505057 466935.34259707294 523553.2429410301 498131.56065483246 0.9587523774724903 0.7550318366075404 0.8369776826221028 0.7094347833995988 0.7894982184767914 0.9405307606385606 0.89681407292842 0.937373536387155 1.0510340727111909 1.0 18.926167294718063 2.03008406277856 1.0128684932333334 1.0127848250261922 0.8072095262332573 0.5542235101850718 0.07042988588907885 0.3991012679801666 0.7555852883495168 0.05532095123764076 0.02661449282233196 107.17267304108927 -2.03008406277856 -0.2055752987929349 RGPGLYYVDSEGNR ddPTM_BT-474_Trastuzumab_2h_R1 6 RGPGLYYVDSEGNR 14 1 P28074;P28074-3 P28074 PSMB5 Proteasome subunit beta type-5 0 ;;;;; 287.54 7.950299999999997e-34 9611090000.0 3216660.0 3819360.0 3554380.0 3769810.0 3654350.0 3764970.0 3767660.0 3286690.0 4234970.0 4013460.0 False True 3199341.859964525 3946485.0887481202 4054805.8087752094 4247067.559472669 4119709.811470575 3504706.485686072 3585403.8919410952 3531959.497273651 3191318.3891906277 3757317.5467040245 0.8514962656725769 1.050346434575389 1.0791757040424081 1.1303456539621626 1.0964497304957486 0.9327682428014245 0.9542456413049958 0.9400215588304318 0.8493608404192774 1.0 21.841271618680395 2.722315929034139 22.740503029250124 0.9339228108807038 1.0490727256962589 0.31505653593460514 0.07795037626681336 295.3559705498334 413459.1158268368 0.025738949113284143 0.02435781422138329 527.6135361584642 -2.722315929034139 0.11514991481555503 RGPGYTSGTNSEASNASET(ph)ESDHRDELSDWSLAPTEEER ddPTM_BT-474_Trastuzumab_2h_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEER 39 2 Q06787;Q06787-2;R9WNI0;G3V0J0;Q06787-9;Q06787-7;A0A087WXC0 Q06787 FMR1 Fragile X mental retardation protein 1 1 RGPGYTSGTNSEASNAS(0.087)ET(0.457)ES(0.457)DHRDELSDWSLAPTEEER 164.56 2.0886999999999998e-16 540960000.0 74822.0 103570.0 90249.0 90152.0 106710.0 107420.0 107700.0 93885.0 120750.0 111020.0 True False 74419.16666550573 107017.26484061299 102955.27474162966 101565.23395650709 120298.88598027691 99994.3082394809 102490.13954604622 100891.17543837013 90992.78046710326 103934.60855099614 0.7160191172413135 1.0296595747325523 0.9905774041676795 0.9772032181818773 1.1574478189452317 0.9620886597212525 0.9861021364770794 0.9707178084850079 0.8754810523239438 1.0 16.66531660289547 4.742911258359325 24.665851613578255 0.9953264098977697 0.7160189826080153 0.6131210507503239 0.06632744276795965 246.65585288562713 1398346.902441606 0.015819851435010933 0.1246377891318537 55323.705187334024 -4.742911258359325 -0.27930742728975433 RGPLT(ph)SGSDEENVALPLGDNVLTHNLGIPVLVVCTK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTK 36 1 O43237;O43237-2;B4E2E0 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 RGPLT(0.333)S(0.333)GS(0.333)DEENVALPLGDNVLTHNLGIPVLVVCTK;RGPLT(0.426)S(0.287)GS(0.287)DEENVALPLGDNVLTHNLGIPVLVVCTK 245.83 3.9828999999999993e-50 1043560000.0 244583.0 259955.0 237313.0 233960.0 245896.0 284840.0 272194.0 263256.0 373290.0 271717.0 True False 243266.1923037259 268607.44502888405 270724.60763842653 263579.31201154075 277209.39806022117 265149.6812412375 259026.93633794313 282901.4995068817 281297.6813297304 254375.7884313726 0.956326047395647 1.0559473709556715 1.0642703431323797 1.0361808159374064 1.0897632977165543 1.0423542384922044 1.0182845542622283 1.112140039944112 1.1058351231631502 1.0 17.9566018354197 4.739558789434357 4.491881727852321 1.0626499693736906 0.9491240710859143 0.4337178506429671 0.03472479350788114 0.17965039976118907 9.219387206065754 0.008293453631338541 0.06478094834041272 54898.28651115401 -4.739558789434357 -0.11352589828777626 RGPNYTSGYGTNSELS(ph)NPS(ph)ETESER ddPTM_BT-474_Trastuzumab_2h_R1 2 RGPNYTSGYGTNSELSNPSETESER 25 1 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 2 RGPNYTSGYGTNSELS(1)NPS(1)ETESER;RGPNYTSGYGTNSELS(1)NPS(0.969)ET(0.029)ES(0.002)ER 150.62 5.7857e-07 782400000.0 299621.0 315888.0 258647.0 280159.0 344661.0 329281.0 304459.0 317626.0 348679.0 338229.0 True False 298007.8738270226 326402.14112167124 295062.2493999745 315627.1006746504 388551.5353842028 306518.5795140988 289731.15502367367 341328.864992147 262751.7325092262 316642.93564758427 0.9411480259856421 1.0308208533189849 0.9318453569681764 0.9967918596672422 1.2270968072903765 0.9680259529151359 0.9150090603825669 1.077961408783923 0.8298044987861734 1.0 18.27249736745464 -0.44175097158983645 6.179774294274364 0.9999997996948954 0.999375261527406 0.0 0.10189885266539121 0.0 0.0 0.09477614742627179 0.02233895218919748 0.36161715777225684 0.44175097158983645 -0.000624538167489419 RGPNYTSGYGTNSELSNPS(ph)ETESER ddPTM_BT-474_Trastuzumab_2h_R1 4 RGPNYTSGYGTNSELSNPSETESER 25 1 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 1 RGPNYTSGYGTNSELSNPS(0.999)ETESER;RGPNYTSGYGTNSELS(0.013)NPS(0.964)ET(0.022)ESER;RGPNYTSGYGTNSELSNPS(0.955)ET(0.044)ESER;RGPNYTSGYGTNSELSNPS(0.591)ET(0.408)ESER 286.46 5.536799999999997e-54 2310230000.0 560800.0 583630.0 542480.0 557650.0 510964.0 635440.0 551120.0 535964.0 660320.0 607730.0 True False 557780.7151107377 603055.7717382144 618856.4686793127 628248.4328228574 576032.2366790954 591513.5284648635 524460.2201171495 575960.3552500461 497592.9838346797 568944.1510961696 0.9803786787087562 1.0599560089972326 1.0877279738037176 1.1042356822061143 1.012458315230536 1.0396688801971339 0.9218131851899452 1.0123319734289535 0.8745902086803784 1.0 19.117927515560794 2.3355519541598277 6.163331115963165 0.9586930871291127 1.0518844827580927 0.4749499192189046 0.048820634142750785 0.19004768530894398 10.141798961440694 0.016906223288193616 0.014041668018629782 216.546891642148 -2.3355519541598277 0.09319139562897993 RGPNYTSGYGTNSELSNPSETESER ddPTM_BT-474_Trastuzumab_2h_R1 4 RGPNYTSGYGTNSELSNPSETESER 25 1 B4DXZ6;P51114;P51114-3;P51114-2;E7EU85;E9PFF5 B4DXZ6;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 0 ;;; 299.94 5.7953e-63 2308710000.0 524790.0 621790.0 612080.0 587310.0 624270.0 635260.0 683150.0 592610.0 668630.0 707580.0 False True 521964.5889496501 642485.9042700079 698255.543705268 661663.3857817494 703767.0841618171 591345.9714411894 650103.4246135697 636833.5674126063 503855.09568297514 662421.6386102845 0.7879642791329949 0.9699047658193949 1.0540953118170482 0.9988553320357622 1.0624156023016889 0.8927032828845883 0.9814042699109927 0.9613719273250791 0.7606259613439392 1.0 19.337390275000292 1.4363256600504946 24.83967580790624 0.8738746962643225 0.969851922188864 0.11316788595950689 0.09187357419388852 83.851423370292 51060.830267755315 0.049010835946610536 0.02203451635916386 27.31024901457521 -1.4363256600504946 0.0959772259245415 RGPPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGPPEK 6 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 106.42 0.051536 309003000.0 398010.0 382760.0 336550.0 312450.0 336380.0 320970.0 401010.0 346100.0 501440.0 390410.0 False True 395867.1583830681 395499.93521669344 383933.31465496 352006.1379637794 379215.99911953474 298782.0993821091 381611.614293036 371927.73946018977 377866.83095175383 365493.69955318276 1.0831025510618022 1.0820978191968655 1.0504512529882724 0.963097690587028 1.0375445584510143 0.8174753757653586 1.0440990221159967 1.017603695808909 1.0338532002431158 1.0 18.479487011389566 3.930512446420845 3.7911600928454727 0.9888277484777873 1.0806946358402314 0.2864449208547398 0.06207768081948448 0.2989170986995187 8.30430554183212 0.016363108090315607 0.03295067720294617 8521.429325451016 -3.930512446420845 0.09186688736244408 RGPPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RGPPPPPR 8 1 P38159;P38159-2;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 ;;; 133.6 0.0014631 538415000.0 227393.0 260847.0 267910.0 263095.0 271055.0 232078.0 262057.0 223553.0 331532.0 237640.0 False True 226168.74135373763 269529.1347096589 305629.3992845346 296402.80002426205 305572.2475811452 216034.99411284868 249380.3017550441 240235.66003913234 249830.380901198 222473.61174615988 1.016609293922885 1.2115105813861147 1.373778206258703 1.3323054257889004 1.3735213142033222 0.9710589602839838 1.1209432876002592 1.0798388993353458 1.1229663551569968 1.0 17.763274698333046 2.7376250854836126 24.997636156228243 1.070301927558093 1.2689315927945704 0.47335382159617156 0.10636370350596289 81.6294532682397 2181137.419972375 0.03498389687029372 0.03479423079943223 546.5439427845754 -2.7376250854836126 0.1986296652364774 RGPQLVCTGSDDGTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGPQLVCTGSDDGTVK 16 1 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 106.31 0.0039581 0.0 87021.0 137250.0 123330.0 137440.0 130840.0 114060.0 138470.0 115300.0 121270.0 129860.0 False True 86552.48860494207 141818.28328062297 140693.79199642304 154839.88990795918 147501.6984505619 106175.3006683595 131771.6770932314 123904.2714815369 91384.63343474621 121572.22362126043 0.7119429588997487 1.1665352418200068 1.1572856677750085 1.2736452891602859 1.2132845320825978 0.8733516382749758 1.083896248404124 1.0191824068920676 0.751690071240623 1.0 16.89145411916106 2.738118266114846 24.999996501573154 0.9643423056118217 1.1203081806607726 0.17971643806854531 0.16567910097298263 74.15606340428224 4190859.6911891312 0.05273010305377128 0.05258506017983052 547.164945358118 -2.738118266114846 0.15596587504895099 RGPRT(ph)PPITTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGPRTPPITTK 11 2 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 RGPRT(1)PPITTK 104.41 0.0041854 174480000.0 134230.0 138630.0 123630.0 120990.0 126920.0 148760.0 154910.0 131970.0 185450.0 142970.0 True False 133507.32059435488 143244.2157463955 141036.02938877628 136307.32159461576 143082.50968622215 138476.57134337354 147416.4114863324 141818.2715300817 139748.33240268563 133845.53219722488 0.9974731199665923 1.0702203756440776 1.053722354967785 1.0183927648310545 1.0690122213073676 1.0345998784578383 1.1013920977885947 1.0595667199492977 1.044101585675365 1.0 17.03020945663937 3.2207347602158247 24.99571855267054 1.057346467269924 1.0388120312091922 0.03929221268811689 0.030654761281760708 645.2501813209002 904775.6622318528 0.008493796910750653 0.010171120111639127 1662.397052593591 -3.2207347602158247 -0.018534436060731796 RGQAALDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RGQAALDR 8 1 P40429;M0QYS1;Q8J015 P40429 RPL13A;RPL13a 60S ribosomal protein L13a 0 ;;; 132.84 0.0015152000000000002 994090000.0 896480.0 1104690.0 1185240.0 1037570.0 811010.0 886370.0 1044820.0 821880.0 1431430.0 1051370.0 False True 891653.4512882908 1141458.9388507933 1352111.48970924 1168926.255615551 914287.3162671209 825097.328190547 994278.0650000002 883212.859022076 1078673.256679301 984270.6664768565 0.9059026969481028 1.1597002508838181 1.3737191768083974 1.1876065145776002 0.9288982669165209 0.8382829604624287 1.0101673237494364 0.8973272181152047 1.0959112096069605 1.0 19.90869557403414 3.239551336016304 24.999761936374064 0.9503914804826599 1.1724432710197796 0.3659591087638311 0.12450077774047427 26.093745251779538 658436.3923667195 0.035869198243067446 0.045918604924815566 1736.0064563345234 -3.239551336016304 0.22205179053711976 RGQPAS(ph)PSAHMVSHSHS(ph)PSVVS ddPTM_BT-474_Trastuzumab_2h_R1 1 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 2 RGQPAS(0.883)PS(0.118)AHMVS(0.05)HS(0.203)HS(0.737)PS(0.008)VVS 68.38600000000001 0.020128 333860000.0 49290.0 75519.0 73455.0 84837.0 87511.0 74666.0 75347.0 21798.0 90403.0 56694.0 True False 49024.62811663383 78032.60426280057 83796.8255176945 95577.35550146645 98655.0071316654 69504.51516485818 71702.17775650836 23424.6774480012 68124.3919881369 53075.74038182462 0.9236729956841438 1.4702122608453 1.5788159508442783 1.800772910823043 1.8587589437649947 1.309534538093028 1.3509406979664522 0.44134433696986736 1.2835316379583763 1.0 15.69576497074344 1.934766895510805 7.146650811104113 0.8542243587824538 1.5090728068373176 0.40750042459877556 0.3118666056769011 0.236270766565048 22.361245122731766 0.1359364300148296 0.08473659728352215 86.0531743883224 -1.934766895510805 0.6548484480548638 RGQPAS(ph)PSAHMVSHSHSPSVVS ddPTM_BT-474_Trastuzumab_2h_R1 7 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 RGQPAS(0.996)PS(0.004)AHMVSHSHSPSVVS;RGQPAS(0.974)PS(0.025)AHMVSHSHSPSVVS;RGQPAS(0.982)PS(0.018)AHMVSHSHSPSVVS;RGQPAS(0.958)PS(0.042)AHMVSHSHSPSVVS;RGQPAS(0.829)PS(0.171)AHMVSHSHSPSVVS;RGQPAS(0.934)PS(0.064)AHMVS(0.002)HSHSPSVVS;RGQPAS(0.902)PS(0.088)AHMVS(0.001)HS(0.004)HS(0.004)PSVVS 146.34 4.0532e-08 4705200000.0 568974.0 1065178.0 1192539.0 1305185.0 1230332.0 1169778.0 1219906.0 149557.4 1030205.0 809915.0 True False 565910.7072029542 1100631.8058163016 1360438.1254651945 1470421.2871763653 1387007.487450905 1088914.0002212187 1160894.4862865265 160718.13262508923 776324.7817897485 758225.5312968827 0.7463619778603475 1.4515889539274167 1.794239404123304 1.939292765124026 1.8292809068016243 1.436134705670911 1.5310675232749174 0.21196613143610982 1.023870536859803 1.0 19.53226751081249 1.76079240249623 24.9999999997542 0.6790959145288025 1.5628634205327012 0.4775860077804961 0.3744862010599443 8.74538611826622 9842.14431404006 0.17566935247828636 0.09742081002608391 57.6490828609354 -1.76079240249623 0.8837675060038988 RGRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 33 2 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0;M0R0K8;M0QYI8 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK 179.74 6.3303e-20 82530000.0 62745.0 88191.0 85288.0 114710.0 96929.0 109100.0 107520.0 94760.0 209700.0 114810.0 True False 62407.18789162487 91126.38412241476 97295.80906341474 129232.27423851863 109272.33360680597 101558.17379377557 102318.8468337129 101831.47238153015 158022.24483603786 107482.72750621365 0.5806252719816499 0.8478235176637724 0.905222739698246 1.2023538780316831 1.0166501738662044 0.9448790159135515 0.9519561813110649 0.9474217369078507 1.470210595715507 1.0 16.713745311523535 4.606573847238192 1.41415316336188 1.0508574177922125 0.466465630366192 0.4859921024600564 0.1565309048640511 0.8483773146214595 1.8577045802098382 0.04283909600834469 0.6566661887079641 40417.90951020931 -4.606573847238192 -0.5843917874260205 RGRS(ph)PS(ph)PKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RGRSPSPKPR 10 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RGRS(1)PS(1)PKPR;RGRS(1)PS(1)PKPR;RGRS(1)PS(1)PKPR 71.558 0.072676 611330000.0 468510.0 424160.0 219247.0 375103.0 458670.0 504130.0 547170.0 494850.0 837720.0 538940.0 True False 465987.5942163548 438277.9091898654 250115.07187091376 422591.0013398234 517078.90574991785 469280.67969437223 520701.2967076151 531778.219797385 631275.130872892 504544.38779025216 0.9235809682815734 0.8686607557154419 0.4957246139756705 0.8375695212677736 1.0248432412746933 0.9301078181637813 1.0320227700641467 1.0539770784616367 1.2511785804172377 1.0 18.94462167187129 3.291720991023756 3.7824216067253107 1.0471780336415843 0.7587231796154029 0.5108564967871456 0.12941277607503673 0.1868478547445686 5.456984255577448 0.03839061979894796 0.05163349097789167 1957.5866337455102 -3.291720991023756 -0.28845485402618143 RGS(ph)ASGSEPAGDSDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RGSASGSEPAGDSDR 15 1 P50747;A0A0C4DG27 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 RGS(0.998)AS(0.002)GSEPAGDSDR;RGS(0.968)AS(0.03)GS(0.002)EPAGDSDR;RGS(0.987)AS(0.013)GSEPAGDSDR;RGS(0.833)AS(0.159)GS(0.008)EPAGDSDR 179.69 4.0443e-07 195587000.0 147698.0 130995.0 130084.0 128282.0 138419.0 142393.0 141072.0 128301.0 170126.0 138129.0 True False 146902.81037879043 135355.08938685033 148398.69648960273 144522.48804695017 156045.83917630918 132549.70706706744 134247.8084126262 137875.47211927714 128200.72687160593 129313.48896181332 1.1360207783286342 1.0467205739597756 1.1475886829828352 1.1176133998644806 1.2067251485449442 1.0250261448456455 1.0381578092929657 1.0662110598531 0.9913948490668596 1.0 16.980513247986362 2.7025548603674427 24.916268934836655 1.0325074209577731 1.126440480150975 0.6173422682033043 0.04169969902214828 428.6481408331762 296627.34175168193 0.013510567117063516 0.012738237416105047 504.144298923274 -2.7025548603674427 0.09393305919320194 RGS(ph)DASDFDISEIQSVCSDVETVPQTHRPTPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F6QMI7;E9PHM6;F8W9J4;Q03001-8;Q03001-14;Q03001;A0A0U1RQJ2;A0A494C073;H0YC65;A0A494C1U5 F6QMI7 DST Dystonin 1 RGS(0.883)DAS(0.117)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.497)DAS(0.497)DFDIS(0.006)EIQSVCSDVETVPQTHRPTPR;RGS(0.977)DAS(0.023)DFDISEIQSVCSDVETVPQTHRPTPR 141.76 3.198e-10 1110810000.0 68248.0 72778.0 59748.8 62565.0 56084.0 75884.0 85178.0 75168.0 79721.0 77008.0 True False 67880.56035106567 75200.37173476988 68160.91169412053 70485.72258506613 63225.96496408822 70638.31769172192 81057.61472844117 80777.41785536995 60074.827756670275 72093.28351013425 0.9415656639015978 1.0430981649517859 0.9454543942992839 0.9777016547617485 0.8770021545100032 0.9798182889227427 1.1243435002797006 1.1204569125224397 0.8332929897446754 1.0 16.137577238211396 2.457222571367926 24.396068832177978 1.0438597894964348 0.958877026650422 0.07957396597575939 0.08557903775905071 319.98061298251827 392297.7040694728 0.029962894282055924 0.02507204973596806 286.5646207278134 -2.457222571367926 -0.0849827628460128 RGS(ph)DELTVPR ddPTM_BT-474_Trastuzumab_2h_R1 7 RGSDELTVPR 10 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 RGS(0.906)DELT(0.094)VPR;RGS(0.596)DELT(0.404)VPR;RGS(1)DELTVPR;RGS(0.999)DELT(0.001)VPR;RGS(0.996)DELT(0.004)VPR;RGS(0.925)DELT(0.075)VPR;RGS(0.957)DELT(0.043)VPR 174.72 3.2005e-06 12083890000.0 4985440.0 4720730.0 4476704.0 4439858.0 4655380.0 5101750.0 4962490.0 4433760.0 5758210.0 4945250.0 True False 4958598.944974454 4877856.64430845 5106985.010991283 5001943.567571099 5248215.04840092 4749078.030727714 4722435.400147254 4764629.6853770865 4339176.301560903 4629639.911158466 1.0710549935045972 1.0536146952923329 1.1031063125843348 1.0804174111933194 1.1336119329176229 1.025798576533215 1.020043781108144 1.029157726477445 0.937259999660561 1.0 22.14246855577114 2.091304872790469 1.2111456218061596 0.9830028663516986 1.0853445829846569 0.6585439127672224 0.030980967006336672 0.30059190625527327 0.8256054661999837 0.0221296243056102 0.011063372431901015 123.39707712321339 -2.091304872790469 0.10234171663295821 RGS(ph)FDATGSGFSMTFSSSSYSSSGYGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RGSFDATGSGFSMTFSSSSYSSSGYGR 27 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 RGS(0.864)FDAT(0.054)GS(0.054)GFS(0.023)MT(0.006)FSSSSYSSSGYGR;RGS(0.992)FDAT(0.003)GS(0.004)GFSMTFSSSSYSSSGYGR;RGS(0.975)FDAT(0.012)GS(0.012)GFSMTFSSSSYSSSGYGR 119.78 2.0752e-10 625300000.0 130036.0 173210.0 163931.0 227303.0 205208.0 171916.0 156269.0 135795.0 140224.0 178694.0 True False 129335.90062435794 178975.1901423441 187011.0598862048 256079.53649409834 231340.02243689136 160031.85156673432 148709.67146444856 145928.71245303805 105667.67410533412 167289.5959323697 0.7731257876708881 1.069852486311812 1.1178881677842532 1.5307559030606053 1.38287154767482 0.9566156859595173 0.8889355649144346 0.8723119428899379 0.6316452228628281 1.0 17.351988198572712 2.526687314065305 5.383984245589838 0.850823640761709 1.1860915624983597 0.36503424217501346 0.20467202112471916 0.23722329056187288 15.865110677263518 0.07311889525212263 0.06728202033045283 336.26937296558987 -2.526687314065305 0.33526792173665065 RGS(ph)FSSENYWR ddPTM_BT-474_Trastuzumab_2h_R1 8 RGSFSSENYWR 11 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 RGS(0.978)FS(0.022)SENYWR;RGS(1)FSSENYWR;RGS(0.996)FS(0.004)SENYWR;RGS(0.992)FS(0.008)SENYWR;RGS(0.98)FS(0.02)SENYWR;RGS(0.989)FS(0.011)SENYWR;RGS(0.666)FS(0.09)S(0.244)ENYWR;RGS(0.855)FS(0.054)S(0.09)ENYWR 203.27 2.2775e-08 5957240000.0 1694833.0 1600161.0 1556243.0 1629497.0 1304226.0 1712792.0 1806493.0 1501722.0 2171397.0 1800329.0 True False 1685708.20744165 1653421.3915672502 1775348.4872933545 1835791.1531239068 1470311.4503468538 1594390.7205186815 1719106.0321165791 1613788.121229805 1636285.3045791008 1685430.461880797 1.0001647920618113 0.9810083708361201 1.0533501840901918 1.0892120408665926 0.8723655372326137 0.9459842791374953 1.019980397291623 0.9574931495120569 0.9708411836541423 1.0 20.684685674623594 3.2551590015040386 24.9998700262414 0.9622582178264798 1.0289688792046572 0.3623208499598969 0.04533409365723249 295.34344193863666 444832.4662665308 0.013047156906562387 0.01761745753819192 1799.5296284166689 -3.2551590015040386 0.06671066137817738 RGS(ph)GDTSISIDTEASIR ddPTM_BT-474_Trastuzumab_2h_R1 31 RGSGDTSISIDTEASIR 17 1 Q32MZ4-2;Q32MZ4;Q32MZ4-3;Q32MZ4-4 Q32MZ4-2;Q32MZ4-3;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 RGS(0.99)GDT(0.01)SISIDTEASIR;RGS(1)GDTSISIDTEASIR;RGS(0.898)GDT(0.097)S(0.005)ISIDTEASIR;RGS(1)GDTSISIDTEASIR;RGS(0.966)GDT(0.017)S(0.017)ISIDTEASIR;RGS(0.953)GDT(0.018)S(0.025)IS(0.004)IDTEASIR;RGS(0.987)GDT(0.01)S(0.003)ISIDTEASIR;RGS(0.96)GDT(0.039)S(0.001)ISIDTEASIR;RGS(0.955)GDT(0.044)S(0.001)ISIDTEASIR;RGS(0.872)GDT(0.028)S(0.037)IS(0.038)IDT(0.013)EAS(0.013)IR;RGS(0.974)GDT(0.025)S(0.001)ISIDTEASIR;RGS(0.813)GDT(0.176)S(0.01)IS(0.001)IDTEASIR;RGS(0.998)GDT(0.002)SISIDTEASIR;RGS(0.892)GDT(0.078)S(0.023)IS(0.007)IDTEASIR;RGS(0.971)GDT(0.025)S(0.004)ISIDTEASIR;RGS(0.998)GDT(0.001)SISIDTEASIR;RGS(0.989)GDT(0.01)S(0.001)ISIDTEASIR;RGS(0.978)GDT(0.017)S(0.005)ISIDTEASIR;RGS(0.996)GDT(0.004)SISIDTEASIR;RGS(0.964)GDT(0.03)S(0.006)IS(0.001)IDTEASIR;RGS(0.996)GDT(0.004)SISIDTEASIR;RGS(0.999)GDT(0.001)SISIDTEASIR;RGS(0.986)GDT(0.012)S(0.001)ISIDTEASIR;RGS(0.993)GDT(0.006)S(0.001)ISIDTEASIR;RGS(0.98)GDT(0.019)S(0.001)ISIDTEASIR;RGS(0.957)GDT(0.034)S(0.008)IS(0.001)IDTEASIR;RGS(0.998)GDT(0.002)SISIDTEASIR;RGS(0.996)GDT(0.003)S(0.001)ISIDTEASIR;RGS(0.986)GDT(0.013)S(0.001)ISIDTEASIR;RGS(0.997)GDT(0.003)SISIDTEASIR;RGS(0.735)GDT(0.028)S(0.039)IS(0.154)IDT(0.043)EAS(0.001)IR 213.48 3.8659e-13 2740804200.0 968493.4999999999 1073372.2 970729.4999999999 1015188.5000000001 1019422.8 1071437.8 1055391.1 965002.3999999999 1156737.0 1080185.8000000003 True False 963279.2386057432 1109098.7448098036 1107399.7758679301 1143711.260010379 1149240.2509876746 997371.8267792893 1004337.8005074753 1037015.7792708981 871674.665831683 1011247.4174504104 0.9525653385937872 1.0967629935768826 1.0950829211113757 1.1309905373048472 1.1364580330748097 0.9862787380895323 0.9931672340282897 1.0254817578525497 0.8619796211983188 1.0 19.947704587592536 2.6858440130257737 9.79831109579149 0.9806698328231851 1.0865484267048404 0.42780038422597866 0.06265029966951406 0.5924351646887513 107.76451101516193 0.020366675228258344 0.019215530074307617 485.11422879769947 -2.6858440130257737 0.10587859388165533 RGS(ph)GDTSSLIDPDTSLSELR ddPTM_BT-474_Trastuzumab_2h_R1 5 RGSGDTSSLIDPDTSLSELR 20 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 RGS(0.99)GDT(0.006)S(0.001)S(0.002)LIDPDTSLSELR;RGS(0.99)GDT(0.009)S(0.001)SLIDPDTSLSELR;RGS(0.993)GDT(0.007)SSLIDPDTSLSELR;RGS(0.997)GDT(0.003)SSLIDPDTSLSELR;RGS(0.997)GDT(0.002)SS(0.001)LIDPDTSLSELR 221.42 4.8084e-25 4939880000.0 3104223.0 3096809.0 2956678.0 2874830.0 2841857.0 3499508.0 3461095.0 3008955.0 3987609.0 3462974.0 True False 3087510.2082795943 3199884.415504425 3372952.562494122 3238783.1832370358 3203750.643943888 3257595.2489157454 3293668.612183127 3233498.5012638965 3004916.193173041 3241964.034518795 0.9523579458024042 0.9870203313280691 1.0404040657393565 0.9990188505338458 0.9882128888019639 1.004821526158377 1.0159485352440087 0.9973887639823386 0.9268814092871518 1.0 21.628436655395795 4.681365479124814 4.2203952509124445 0.998343129688076 0.9508835918895227 0.1870864255899033 0.027150401754044325 0.30375205110396003 10.224786249891055 0.00644190144698391 0.03680223941421246 48013.73366993672 -4.681365479124814 -0.047459537798553386 RGS(ph)GSALGGPLDPQFVGPSDTSLGAAPGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSGSALGGPLDPQFVGPSDTSLGAAPGHR 30 1 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 1 RGS(0.713)GS(0.287)ALGGPLDPQFVGPSDTSLGAAPGHR;RGS(0.5)GS(0.5)ALGGPLDPQFVGPSDTSLGAAPGHR 219.52 6.598699999999998e-35 2208270000.0 452090.0 456630.0 418980.0 417340.0 434630.0 471720.0 456500.0 451780.0 641140.0 510560.0 True False 449655.9976719214 471828.65351133596 477968.7421605561 470175.2012091661 489977.55424616014 439111.1067094382 434417.3510006507 485494.1176923565 483139.6378358474 477975.62368759286 0.940750898974335 0.9871395739204588 0.9999856027657149 0.9836802922746429 1.025109921853278 0.9186893325682302 0.9088692591666306 1.015729869123363 1.0108039278413699 1.0 18.866577518413198 1.607059477372892 24.999999999999996 1.0099543600380383 0.9689946612831347 0.24192640170435598 0.034250695855338235 0.140905753583431 3949.371877814055 0.01829620589456476 0.009238928341156518 40.463130285276165 -1.607059477372892 -0.04095969875490357 RGS(ph)GVFCANCLTTK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSGVFCANCLTTK 14 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 RGS(1)GVFCANCLTTK;RGS(1)GVFCANCLTTK 117.55 0.00018204 330720000.0 480730.0 193739.0 182326.0 224650.0 154251.0 224570.0 199692.0 258110.0 442420.0 326840.0 True False 478141.8030941237 200187.4854973012 207995.91599399826 253090.66696611635 173893.95053269336 209046.0044809182 190032.13506247982 277371.478856023 333391.5191242714 305980.7913781982 1.5626530049173288 0.6542485382680954 0.6797678869223894 0.8271456055334251 0.5683165591847792 0.6831997640745143 0.6210590351326872 0.9064996453100432 1.0895831650823893 1.0 18.22308156182126 -0.37686465095704147 7.300078095044511 0.9999998579065903 0.8163315454144441 0.01873543171668335 0.28323078762506204 35476653.46308154 4859763.170989581 0.261694695706803 0.0634702865020097 0.41988982339412745 0.37686465095704147 -0.1836683124921462 RGS(ph)HPYIDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSHPYIDFR 10 1 Q13946-3;Q13946-2;Q13946;E5RG23 Q13946-3 PDE7A High affinity cAMP-specific 3,5-cyclic phosphodiesterase 7A 1 RGS(1)HPYIDFR 85.536 0.0086811 307550000.0 264780.0 242380.0 226030.0 230480.0 212590.0 275280.0 259910.0 204570.0 323470.0 257410.0 True False 263354.45389982325 250447.47177819593 257853.05931202028 259658.74436835301 239662.07638034955 256250.54153941773 247337.16034738044 219836.05218541197 243755.152775933 240981.87342021137 1.0928392669626223 1.0392792960882953 1.070010186460746 1.077503219155301 0.9945232518067431 1.0633602349525337 1.0263724687544737 0.9122514032500426 1.0115082488004636 1.0 17.878565105911616 1.9570620526341416 7.985148211476763 0.9656789829385044 1.0535429354365085 0.5148693675862378 0.03508126994911279 0.21289807161687604 36.003500295630715 0.014224639086727947 0.009037392247765197 90.5862022549723 -1.9570620526341416 0.08786395249800405 RGS(ph)IDSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSIDSPK 8 1 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 RGS(1)IDSPK;RGS(1)IDSPK 82.171 0.010631 175070000.0 300620.0 255580.0 205649.0 244710.0 217350.0 282660.0 278270.0 261350.0 466620.0 300950.0 True False 299001.49532202154 264086.8257986274 234602.59166684828 275690.2609093183 245028.23416561924 263120.3795100694 264809.017005369 280853.2641084095 351627.7533876578 281743.1133437422 1.0612557367364048 0.9373319640875368 0.8326826124783399 0.9785164138970839 0.8696866846454956 0.9339017248277793 0.93989526083744 0.9968416291536929 1.2480438269263123 1.0 18.104020821422576 1.4547048697777771 4.766868077376718 1.1270147580198797 0.9335648536349156 0.45852833413588645 0.0801232708105192 0.14623222723322019 6.609661436022082 0.049743915831756955 0.01924637747577684 28.490814807028563 -1.4547048697777771 -0.19344990438496412 RGS(ph)LEK ddPTM_BT-474_Trastuzumab_2h_R1 6 RGSLEK 6 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 RGS(1)LEK;RGS(1)LEK;RGS(1)LEK;RGS(1)LEK;RGS(1)LEK;RGS(1)LEK 96.034 0.026135 9845210000.0 7397950.0 5904370.0 5168370.0 5050000.0 4862570.0 4563490.0 6743990.0 6549950.0 9722320.0 6674400.0 True False 7358120.259189506 6100893.3861829685 5896031.5717226425 5689329.482211839 5481789.46678958 4248026.677599962 6417757.439156361 7038740.528972169 7326384.508413477 6248434.077758674 1.1775942848434242 0.9763875733120276 0.9436014685198634 0.9105208459289074 0.8773061215932535 0.6798546043273194 1.0270985272934854 1.1264807216301753 1.1725152921900501 1.0 22.57506325008909 2.0054379238918867 24.992943644625964 1.104486503406355 0.9212734946069632 0.29371175897388724 0.12066373467548255 172.89275101671655 794618.9009615552 0.047228418321405015 0.03477432621029794 101.26000019610241 -2.0054379238918867 -0.18321300879939173 RGS(ph)LPAGASWQNTDLFEMIEK ddPTM_BT-474_Trastuzumab_2h_R1 7 RGSLPAGASWQNTDLFEMIEK 21 1 J3KPC5;P47736-3 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 RGS(1)LPAGASWQNTDLFEMIEK;RGS(1)LPAGASWQNTDLFEMIEK;RGS(0.946)LPAGAS(0.054)WQNTDLFEMIEK;RGS(1)LPAGASWQNTDLFEMIEK;RGS(1)LPAGASWQNTDLFEMIEK;RGS(1)LPAGASWQNTDLFEMIEK;RGS(0.907)LPAGAS(0.093)WQNTDLFEMIEK 261.94 7.0204999999999975e-37 2069003000.0 3207553.0 2491255.0 2315914.0 2118065.0 2137373.0 2796360.0 2580044.0 2755125.0 3677396.0 2676359.0 True False 3190283.89104064 2574174.9166795486 2641974.5609146543 2386211.8118299055 2409554.782347695 2603054.2151233912 2455237.4149947916 2960726.417741275 2771151.0303818095 2505551.477273779 1.2732861088577192 1.0273885569816497 1.0544483259985995 0.9523699007877804 0.9616864008595284 1.0389146815517445 0.9799189668480758 1.1816665690551922 1.1060044287723123 1.0 21.256696747979586 -0.9181219035989929 7.756403496790395 1.000013379083852 1.0607213992353839 0.03770438546121457 0.0956896111279335 0.0 1.8062169505045367e-10 0.09401781755145602 0.02216021178412292 0.1207474857299616 0.9181219035989929 0.06070802015153198 RGS(ph)LPDQK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGSLPDQK 8 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 RGS(1)LPDQK;RGS(1)LPDQK;RGS(1)LPDQK;RGS(1)LPDQK 127.87 0.00070924 1067150000.0 1864530.0 1414250.0 1344670.0 1286450.0 1336910.0 1782470.0 1905460.0 1671190.0 2609530.0 1884420.0 True False 1854491.577648758 1461322.4563178222 1533987.8479188376 1449314.4380973084 1507157.5640136083 1659252.0443830495 1813285.6202359253 1795902.6839308692 1966446.2974105165 1764154.7022668691 1.051206889773221 0.8283414455886894 0.8695313658987637 0.8215347759666409 0.8543227881755326 0.9405365880049953 1.0278495519162378 1.017996143775376 1.1146677187004692 1.0 20.75054564859094 2.357833867482538 2.510889329012598 1.0423886646911185 0.8777373170307704 0.5467859779968736 0.06647357794815076 0.20738609188089144 2.6779134121334063 0.026328513609926153 0.020388345750180066 227.94699298602916 -2.357833867482538 -0.16465134766034806 RGS(ph)LQAYTFEEQPTLPVLLPTSSGLPPGWEEKQDER ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSLQAYTFEEQPTLPVLLPTSSGLPPGWEEKQDER 36 2 P46934-4;H0Y8X6;P46934-3;P46934-2;P46934 P46934-4 NEDD4 E3 ubiquitin-protein ligase NEDD4 1 RGS(1)LQAYTFEEQPTLPVLLPTSSGLPPGWEEKQDER 142.77 2.6512e-13 79548000.0 43610.0 33375.0 31086.0 34547.0 41120.0 49174.0 51540.0 48685.0 81505.0 51440.0 True False 43375.20860552647 34485.86669938647 35462.638595644254 38920.646657816265 46356.388262665096 45774.717123144954 49046.81329808006 52318.12191742081 61419.18486104551 48157.055160000295 0.9007030945188346 0.7161124488365882 0.7363954975614841 0.80820238132302 0.9626084508001467 0.9505298231185421 1.0184761741581492 1.0864061712992106 1.2753932867568876 1.0 15.555459552461832 2.640505586880834 0.9090006968455353 1.1275105767998206 0.7729640478468839 0.7137050444224196 0.08535905108013739 0.29258087998166993 0.5056936683668809 0.05283890449356239 0.044336845796329884 437.02430103241227 -2.640505586880834 -0.3545465289529367 RGS(ph)LSNAGDPEIVK ddPTM_BT-474_Trastuzumab_2h_R1 6 RGSLSNAGDPEIVK 14 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 RGS(1)LSNAGDPEIVK;RGS(0.998)LS(0.002)NAGDPEIVK;RGS(0.991)LS(0.009)NAGDPEIVK;RGS(0.991)LS(0.009)NAGDPEIVK;RGS(0.885)LS(0.115)NAGDPEIVK;RGS(0.991)LS(0.009)NAGDPEIVK 192.25 2.4223e-07 16444300000.0 18114800.0 14846000.0 13785200.0 12855000.0 12598400.0 17513900.0 17660000.0 16929600.0 23192600.0 18406400.0 True False 18017271.929543473 15340140.13540348 15726036.33689364 14482441.681947168 14202731.56343289 16303205.316285996 16805718.332248624 18192972.718766894 17477094.49491792 17231687.793488137 1.0455895061162963 0.8902285324134369 0.9126231002651125 0.8404540434756536 0.8242217322902119 0.9461177286677039 0.9752798758691248 1.0557858833562448 1.014241593996528 1.0 24.038560680460545 2.1998934892639945 2.4961922241711014 1.0266020902612432 0.899079775214602 0.43916835398187304 0.058200234176573065 0.24927190389221288 3.155134115464095 0.02663557861987546 0.01803632557096395 158.45045450132562 -2.1998934892639945 -0.12752231504664113 RGS(ph)LSQEMAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSLSQEMAK 10 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 RGS(0.986)LS(0.014)QEMAK;RGS(0.997)LS(0.003)QEMAK 128.95 0.00019357 322810000.0 908570.0 676160.0 587085.0 542665.0 601560.0 732480.0 691650.0 701830.0 1047640.0 766700.0 True False 903678.3600716167 698665.5768526492 669741.464965702 611366.333359304 678165.1002745328 681845.3816724537 658192.2471404168 754204.1184205294 789463.159656778 717768.5495951056 1.259010805894718 0.9733856091169885 0.9330883407241851 0.8517597123810687 0.9448242064340753 0.949951599379889 0.9169978923034509 1.0507622810249588 1.0998854158518305 1.0 19.453159184526967 -0.1820065985159176 8.722882994099407 1.0000000006281338 0.9887335999969525 0.0 0.10950979099199043 0.0 0.0 0.10582630088256503 0.024943498327316557 0.6576478452120196 0.1820065985159176 -0.011266400631181228 RGS(ph)LTLTISGESPK ddPTM_BT-474_Trastuzumab_2h_R1 5 RGSLTLTISGESPK 14 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RGS(0.998)LT(0.002)LTISGESPK;RGS(0.994)LT(0.006)LTISGESPK;RGS(0.986)LT(0.014)LTISGESPK;RGS(0.725)LT(0.275)LTISGESPK;RGS(0.984)LT(0.016)LTISGESPK 261.8 1.6820999999999997e-24 4206350000.0 6725040.0 4898520.0 4569030.0 4267020.0 4359110.0 6322200.0 6058680.0 5885820.0 9030300.0 6601170.0 True False 6688833.131862183 5061564.276982125 5212309.709279301 4807224.294492588 4914216.820030787 5885161.194857991 5765598.5019947905 6325049.775988365 6804903.564820555 6179877.67905403 1.0823568813559528 0.8190395570672382 0.8434325046506684 0.7778834054897414 0.7951964545652656 0.9523103045882371 0.9329632075949674 1.0234910955319356 1.101138876564657 1.0 22.559146851860195 2.0150597882012966 1.509117982415606 1.0507988611593473 0.8598501723877614 0.4256358386581235 0.08563860091575749 0.3652120614792372 1.5539000753553538 0.056838134597163414 0.027617672890891065 103.52846818414652 -2.0150597882012966 -0.19094868877158588 RGS(ph)MEQAPAVALPPTHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSMEQAPAVALPPTHK 17 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 RGS(1)MEQAPAVALPPTHK;RGS(1)MEQAPAVALPPTHK 168.68 9.7221e-10 626880000.0 555410.0 379200.0 320540.0 370290.0 277760.0 352040.0 412050.0 360450.0 535070.0 501530.0 True False 552419.7342718524 391821.4427687598 365669.24581637385 417168.67603331094 313131.0895874962 327704.30341302196 392117.5673161406 387348.6093280134 403209.16807066597 469521.9260185646 1.1765579063713631 0.8345114914894676 0.7788118627753191 0.888496687621818 0.6669147322741115 0.6979531418093236 0.8351421852461827 0.824985134587086 0.8587653647823964 1.0 18.840833005733625 4.737445314113329 4.424308911226686 0.8072494995630758 1.2019599962362368 0.5859137947787227 0.08942162680137428 0.13015219444646994 6.31777882529175 0.020772126284278436 0.16085885683289003 54631.77538159039 -4.737445314113329 0.39471049667316105 RGS(ph)MNNELLSPEFGPVRDPLADGVEGLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSMNNELLSPEFGPVRDPLADGVEGLGR 29 2 O00562-2;O00562 O00562-2 PITPNM1 Membrane-associated phosphatidylinositol transfer protein 1 1 RGS(0.601)MNNELLS(0.399)PEFGPVRDPLADGVEGLGR 118.14 8.4446e-05 127540000.0 48446.0 52086.0 52257.0 36403.0 40108.0 44713.0 59867.0 51320.0 68276.0 45526.0 True False 48185.172118856586 53819.65102334808 59614.331374013454 41011.6160675163 45215.51606125905 41622.09555308048 56971.00449585097 55149.75899767968 51450.29465152752 42620.49170323046 1.1305634964132605 1.2627646672426533 1.398724627325098 0.9622511244845114 1.060886776626087 0.9765747388110423 1.3367045338787773 1.2939728471856076 1.207172714237546 1.0 15.379259616821173 -2.3280579658213134 2.0673048044666684 0.10094822198713212 1.1886121550157283 0.12722676261896015 0.14103374718015094 2279046.218748637 393835.2438617085 9504576.906550117 0.039299270577375714 0.0046983139544301755 2.3280579658213134 1.0876639330285962 RGS(ph)MSYLAAVEEEVEESSVK ddPTM_BT-474_Trastuzumab_2h_R1 6 RGSMSYLAAVEEEVEESSVK 20 1 Q8WXH0;Q8WXH0-2;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;Q8WXH0-7 Q8WXH0 SYNE2 Nesprin-2 1 RGS(0.346)MS(0.346)Y(0.308)LAAVEEEVEESSVK;RGS(0.354)MS(0.354)Y(0.292)LAAVEEEVEESSVK;RGS(0.912)MS(0.087)Y(0.001)LAAVEEEVEESSVK;RGS(0.949)MS(0.044)Y(0.007)LAAVEEEVEESSVK;RGS(0.482)MS(0.322)Y(0.197)LAAVEEEVEESSVK;RGS(0.974)MS(0.025)YLAAVEEEVEESSVK 191.44 8.944e-18 373570000.0 405040.0 312509.0 260667.7 255430.8 274170.4 393667.0 341552.0 285930.8 500817.0 339387.0 True False 402859.30964417465 322910.67314932 297367.44639573473 287768.3130900901 309084.3753047228 366453.72688243986 325029.82490465365 307268.4082231826 377397.36095398176 317727.0310961708 1.2679415668673018 1.016314765650456 0.9359211439133942 0.9057092564560154 0.972798487551939 1.1533602464296477 1.0229844901243936 0.9670829931060461 1.187803756110854 1.0 18.277428309119813 1.2597434258638893 24.99590981236158 1.093902151201243 1.0217357612497693 0.046179092292811696 0.11037050754397945 623.1918378483421 735375.5299700474 0.07405245116197669 0.026984124874297237 18.18626126354794 -1.2597434258638893 -0.07216638995147373 RGS(ph)PAPANPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSPAPANPGR 11 1 E9PJN1;O75676-2;O75676 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 RGS(1)PAPANPGR 60.549 0.05692899999999999 169560000.0 70777.0 118620.0 116660.0 148200.0 126830.0 105810.0 84213.0 78429.0 75309.0 84691.0 True False 70395.94449606391 122568.19499269567 133084.71397310216 166962.10480471153 142981.04871969405 98495.60374994847 80139.2954650992 84281.77023439243 56750.10603889923 79285.94787238697 0.8878741616278363 1.5459006076331803 1.678540996789316 2.1058221448451606 1.803359265500946 1.2422832342053853 1.0107629109017617 1.0630101864966839 0.7157649944507212 1.0 16.27477757421468 2.485521146775468 3.2564700640383215 0.9687157343971731 1.6308006190461852 0.5143155453498809 0.29979535517073136 0.2143703722958649 4.735464140741659 0.11463586515204667 0.0994989820668084 305.85891724732556 -2.485521146775468 0.6620848846490122 RGS(ph)PSAAFTFPDTDDFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSPSAAFTFPDTDDFGK 18 1 Q9ULT0;Q9ULT0-4;H7C055;Q9ULT0-3 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 RGS(0.996)PS(0.004)AAFTFPDTDDFGK 223.97 2.9771999999999997e-19 64968000.0 109870.0 85518.0 83086.0 69067.0 77626.0 113190.0 114000.0 101300.0 144390.0 108550.0 True False 109278.47212770459 88364.41493327735 94783.78660354164 77810.87511840102 87511.21097465088 105365.4417205999 108485.38447770903 108859.52039097731 108807.01922687414 101622.24606566933 1.075340059469732 0.8695381016886339 0.9327070624112302 0.7656874171834269 0.8611422632609423 1.036834411753817 1.067535787465322 1.071217421435767 1.0707007908146602 1.0 16.63285673063639 2.672201887464115 5.515516023778206 1.0582689088827673 0.8935492765139716 0.4908591974852632 0.07523786006603835 0.17632682949238718 10.517106914904337 0.024741768799095728 0.023409251433232373 470.1125958003028 -2.672201887464115 -0.1647196323687956 RGS(ph)PTTGFIEQK ddPTM_BT-474_Trastuzumab_2h_R1 6 RGSPTTGFIEQK 12 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RGS(0.826)PT(0.143)T(0.032)GFIEQK;RGS(0.977)PT(0.019)T(0.003)GFIEQK;RGS(0.992)PT(0.008)TGFIEQK;RGS(0.987)PT(0.012)TGFIEQK;RGS(0.659)PT(0.341)TGFIEQK;RGS(0.917)PT(0.083)TGFIEQK 242.43 2.8700000000000003e-16 12523600000.0 12142320.0 10379750.0 9538330.0 9418610.0 9591040.0 11598090.0 11725130.0 11410410.0 15981700.0 11726800.0 True False 12076947.098258572 10725233.704058636 10881243.955349395 10611005.060288172 10812402.093452113 10796341.337267177 11157940.6675537 12261912.73508795 12043224.178808318 10978385.58418142 1.1000658526386657 0.9769408827753739 0.9911515561111285 0.9665360156030044 0.9848808834908777 0.9834179401408029 1.0163553267459469 1.1169140162790367 1.0969940968516543 1.0 23.38816258003557 1.9016232847805037 5.774686833905481 1.081758843763621 0.9969890621831147 0.32021544145909453 0.04527193032642416 0.21667109033040388 10.263307505967337 0.019365588407909477 0.011694295543679666 79.73027917600501 -1.9016232847805037 -0.0847697815805063 RGS(ph)PVPPVPER ddPTM_BT-474_Trastuzumab_2h_R1 6 RGSPVPPVPER 11 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER 102.26 0.0030632 16240080000.0 3250710.0 3155970.0 2722620.0 2909740.0 2982930.0 3408540.0 3248240.0 3028920.0 4124690.0 3424110.0 True False 3233208.5385478353 3261014.553625852 3105941.230562727 3278112.7856576387 3362788.4542887066 3172915.6526401015 3091110.221718192 3254953.3909441154 3108215.4175143377 3205580.3682719427 1.0086187732334992 1.0172930262184605 0.9689169740695258 1.0226269221335407 1.0490420042413446 0.9898100462695777 0.9642903520102792 1.01540221020844 0.9696264203133699 1.0 21.612154148828857 2.533223703947927 24.999958033387834 0.9889190900416318 1.0123591102441032 0.23742972479568614 0.022758601845762134 483.5179684166492 215460.65387027778 0.007510712203202977 0.007081148922405504 341.36870446665597 -2.533223703947927 0.02344002020247138 RGS(ph)PVPPVPERR ddPTM_BT-474_Trastuzumab_2h_R1 5 RGSPVPPVPERR 12 2 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RGS(1)PVPPVPERR;RGS(1)PVPPVPERR;RGS(1)PVPPVPERR;RGS(1)PVPPVPERR;RGS(1)PVPPVPERR 113.29 0.00061673 3544990000.0 360723.0 482586.0 384305.0 430390.0 413686.0 410755.0 443508.0 422262.0 588002.0 469601.0 True False 358780.9074480926 498648.58328060224 438411.8035610581 484877.3298711193 466366.4599909741 382360.47366326547 422053.82367491047 453773.33464298904 443096.7859231276 439630.66213435645 0.8160961878915644 1.134244324223703 0.9972275396639059 1.102919727020621 1.0608142246649004 0.8697311325077947 0.9600190797108817 1.0321694406845316 1.0078841720728566 1.0 18.745932485306565 RGS(ph)QNSSEHRPPASSTSEDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 RGSQNSSEHRPPASSTSEDVK 21 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 RGS(0.954)QNS(0.038)S(0.008)EHRPPASSTSEDVK;RGS(0.983)QNS(0.015)S(0.002)EHRPPASSTSEDVK;RGS(0.827)QNS(0.147)S(0.027)EHRPPASSTSEDVK 173.4 2.274e-12 732828000.0 248557.0 234670.0 247266.0 243118.0 222025.0 299783.0 268252.0 212362.0 293172.0 233927.0 True False 247218.79672927907 242480.84908898934 282078.9035253994 273896.71387254965 250298.56770472327 279059.7068232755 255275.6259378456 228209.53079238604 220923.68890353275 218997.5785850194 1.1288654346162261 1.1072307312971192 1.2880457644689918 1.2506837547804999 1.1429284712732666 1.2742593257255523 1.1656550158555397 1.0420641737999417 1.008795121530376 1.0 17.740555392744096 1.721932111436948 2.9896727128236873 1.009370049108804 1.199842688233993 0.6704657872694048 0.057536218056024734 0.1387683028247966 2.6845720430572966 0.035587666642414126 0.01633382290497799 52.71474517174952 -1.721932111436948 0.19047263912518897 RGS(ph)RS(ph)SPEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSRSSPEPK 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RGS(0.99)RS(0.882)S(0.128)PEPK 85.493 0.069857 81334000.0 215000.0 166580.0 123540.0 126520.0 130170.0 163050.0 194520.0 183670.0 300510.0 192690.0 True False 213842.46388874552 172124.51460026356 140933.3581710704 142537.41902761214 146746.37792196282 151778.73727841524 185110.32446143834 197376.3880573622 226453.33712769544 180392.3592297914 1.1854297199824522 0.9541674344477312 0.7812601308215252 0.790152197333602 0.8134844432908109 0.8413811866891385 1.026153908357266 1.0941504889679714 1.2553377432091215 1.0 17.460778706961708 1.9725509547423503 2.612915433274794 1.1280162142381078 0.8840281368849094 0.38660079109496914 0.12540475558628983 0.28838170805816987 3.661360221856023 0.06878465581928188 0.03771233789530563 93.87521717786794 -1.9725509547423503 -0.24398807735319838 RGS(ph)RSS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSRSSPEPK 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RGS(0.985)RS(0.082)S(0.932)PEPK 92.773 0.045446 8346100000.0 16936000.0 12368000.0 8930500.0 10216000.0 11020000.0 11836000.0 14060000.0 13521000.0 23052000.0 13471000.0 True False 16844818.457766503 12779661.403386125 10187836.774702482 11509344.552529933 12423331.67934265 11017805.178947078 13379864.08558412 14530005.67824681 17371143.480974436 12611269.246896675 1.3356957280022865 1.013352514579838 0.8078359580824476 0.9126238071050701 0.9850976484702147 0.8736476054270501 1.0609450820246804 1.1521445933621859 1.3774302285433364 1.0 23.588210145591713 1.7830148320045498 2.900445616727255 1.2041069833116493 0.9779020691042928 0.21450543250543375 0.1575542556579039 0.3304031912810394 5.388827119039891 0.09016580945958322 0.04350238953229927 60.675705117269864 -1.7830148320045498 -0.22620491420735656 RGS(ph)SDPTVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSSDPTVQR 10 1 H7BXG1;A0A2R8YDG4;H7BZJ9;H7BZI2;Q2KHT3;Q2KHT3-2 H7BXG1;Q2KHT3 CLEC16A Protein CLEC16A 1 RGS(0.671)S(0.329)DPTVQR 51.00899999999999 0.097638 268950000.0 54383.0 57265.0 57271.0 51134.0 45256.0 53514.0 52581.0 48068.0 66910.0 64298.0 True False 54090.20797051931 59171.03090757652 65334.258991544215 57607.559157112846 51019.08334667247 49814.70313840602 50037.45615107388 51655.07824435825 50420.927048065285 60194.44659171268 0.898591332476279 0.9829981710592375 1.0853868203938128 0.9570244834686131 0.8475712667104505 0.8275631052194821 0.8312636627506237 0.8581369406836594 0.8376341988831745 1.0 15.877342772777553 3.3288292057347677 4.495692423318702 0.8557291214688718 0.9928402896209279 0.43323502258794455 0.06356085026055991 0.1704371427381186 6.149613261360684 0.017307012001622237 0.023536399694849167 2132.206219064423 -3.3288292057347677 0.13711116815205604 RGS(ph)SGSVDETLFALPAASEPVIR ddPTM_BT-474_Trastuzumab_2h_R1 5 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 RGS(0.534)S(0.179)GS(0.272)VDET(0.015)LFALPAASEPVIR;RGS(0.596)S(0.162)GS(0.226)VDET(0.017)LFALPAASEPVIR;RGS(0.964)S(0.02)GS(0.016)VDETLFALPAASEPVIR;RGS(0.399)S(0.132)GS(0.358)VDET(0.11)LFALPAASEPVIR;RGS(0.535)S(0.139)GS(0.32)VDET(0.006)LFALPAASEPVIR 223.42 8.9859e-33 1789514000.0 855170.0 803295.0 813477.0 702644.0 753746.0 1019180.0 809556.0 803928.0 967978.0 911340.0 True False 850565.859738318 830032.188472919 928007.4907311619 791598.6583562872 849731.0852974403 948726.4854916596 770394.6834757574 863921.1896236684 729432.7921406678 853177.5009625718 0.9969389239386794 0.972871632850679 1.0877074110418588 0.9278241133447492 0.9959604939637494 1.1119919177677418 0.9029711667344518 1.0125925597533636 0.8549601827494363 1.0 19.70248639548601 2.194346628703466 24.999991880899763 0.9496099763342164 1.0120119710579956 0.2272694768195822 0.0651690121535979 230.91484915125378 130565.05704407343 0.023431405290107864 0.01730533455603727 156.43957545793228 -2.194346628703466 0.062401994723779164 RGS(ph)SPGSLEIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSSPGSLEIPK 12 1 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 RGS(0.977)S(0.023)PGSLEIPK;RGS(0.987)S(0.013)PGSLEIPK 151.44 3.7469e-05 1025620000.0 2191200.0 1751110.0 1515560.0 1419320.0 1421660.0 2107800.0 2082400.0 1877590.0 2832400.0 1989020.0 True False 2179402.8226652043 1809394.6377816515 1728937.6745163288 1599005.7664738407 1602699.9741610037 1962092.7472274955 1981666.3564594868 2017705.3000088343 2134392.9722155132 1862079.040714305 1.170413701573684 0.97170667743919 0.9284985420667738 0.8587206727059514 0.8607045883219856 1.0537107739931517 1.0642224702230187 1.0835766129642006 1.146241875638505 1.0 20.828482882406885 2.5580606560878225 7.61440050509336 1.0776912300611436 0.9516640867264391 0.2888347867637645 0.08755743245088135 0.3627009221353622 30.42532654205427 0.02966044314653606 0.027878364199661818 361.4603427636063 -2.5580606560878225 -0.12602714333470455 RGSGDT(ph)SSLIDPDTSLSELR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSGDTSSLIDPDTSLSELR 20 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 RGS(0.002)GDT(0.799)S(0.186)S(0.013)LIDPDTSLSELR;RGS(0.004)GDT(0.496)S(0.151)S(0.349)LIDPDTSLSELR 183.39 8.4903e-17 1880770000.0 3036300.0 3128600.0 2841800.0 2824000.0 2718600.0 3370000.0 3226600.0 3024700.0 4098300.0 3430300.0 True False 3019952.8981646397 3232733.5597213586 3241900.738631594 3181518.1104487535 3064797.5955953645 3137039.8321267017 3070517.0311910165 3250418.47311539 3088328.8794064554 3211375.3171724193 0.9403923864071033 1.0066508085911756 1.0095054045212168 0.9907026729127523 0.9543567141488417 0.9768524455400096 0.9561377067239133 1.0121577679613443 0.9616841927170615 1.0 21.614759853690618 1.733324992699437 24.999999946333645 0.9917825206273776 0.9785326889695201 0.06918709364392672 0.024145708747368846 1.830572217294873 8667.476104869493 0.01126225622783794 0.00624538146010165 54.11591334750747 -1.733324992699437 -0.013249831657857536 RGSMS(ph)YLAAVEEEVEESSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSMSYLAAVEEEVEESSVK 20 1 Q8WXH0;Q8WXH0-2;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;Q8WXH0-7 Q8WXH0 SYNE2 Nesprin-2 1 RGS(0.283)MS(0.599)Y(0.117)LAAVEEEVEESSVK 136.4 7.98e-08 0.0 16421.0 15004.0 13026.0 11976.0 13047.0 18542.0 17794.0 16759.0 21608.0 16764.0 True False 16332.591160544605 15503.399069890467 14859.947575978322 13492.16037207305 14708.458114372366 17260.235183173092 16933.236240318896 18009.64168047766 16282.997932365768 15694.107167617527 1.0406830402078875 0.9878484264386471 0.9468488660915754 0.8596959500768627 0.9371962327822699 1.099790832242247 1.078955053604969 1.147541652935689 1.0375230497956156 1.0 13.937935336377143 2.738220361835752 24.996363119189247 1.0877065858139732 0.9506228182452764 0.5139047353527788 0.05654422062297636 22.979102607643668 1688055.9381239882 0.018581635524887376 0.018538117403244625 547.2935902492413 -2.738220361835752 -0.13708376756869678 RGSPT(ph)TGFIEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSPTTGFIEQK 12 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RGS(0.122)PT(0.858)T(0.02)GFIEQK 225.65 3.3254e-11 2103600000.0 1699400.0 1360300.0 1185000.0 1163400.0 1175200.0 1620200.0 1593300.0 1536800.0 2262900.0 1493800.0 True False 1690250.6192210896 1405576.7631812845 1351837.6997953565 1310686.3207139096 1324854.754043873 1508199.3875405602 1516225.9920029275 1651483.8197122763 1705238.6163064833 1398464.405093476 1.2086475802064551 1.0050858341920639 0.9666586399136824 0.9372325215716169 0.9473639437789746 1.0784681984378068 1.0842077828227457 1.1809266032780348 1.219365047902311 1.0 20.415412102903275 2.257695083943997 2.2130860010588864 1.1477527467029893 1.007347124170851 0.2280335587066451 0.09048143602136673 0.37387541781074657 3.7354745767999082 0.04118078598651262 0.028376725852253627 181.0068805832477 -2.257695083943997 -0.1404056225321384 RGSPTT(ph)GFIEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSPTTGFIEQK 12 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RGS(0.235)PT(0.299)T(0.466)GFIEQK 122.63 0.00068691 615900000.0 1249600.0 994460.0 1026600.0 981270.0 908000.0 1241400.0 1235300.0 1184900.0 1766600.0 1245200.0 True False 1242872.2924436124 1027559.9999362364 1171136.3566328366 1105498.68138812 1023628.4178623522 1155584.9399412721 1175543.819695737 1273323.2548002852 1331245.1012272008 1165730.2699306451 1.0661748472204953 0.8814732073461307 1.0046375107875625 0.9483314535993745 0.8781005728908907 0.9912970176282918 1.0084183708858103 1.0922966381202757 1.1419838152666337 1.0 20.152802581490427 2.0061331762522365 2.250227641792641 1.0873232435298885 0.9545175970066464 0.4128527370476418 0.06167610567239958 0.26073893618549837 2.472825116865616 0.03182861396764157 0.017232704707926396 101.42223489873807 -2.0061331762522365 -0.13280564652324212 RGSQNSSEHRPPASSTSEDVKAS(ph)PSSANK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSQNSSEHRPPASSTSEDVKASPSSANK 29 3 O15014 O15014 ZNF609 Zinc finger protein 609 1 RGSQNSSEHRPPAS(0.013)S(0.013)T(0.013)S(0.013)EDVKAS(0.869)PS(0.035)S(0.042)ANK 59.837 0.02564 46856000.0 20746.0 15972.0 18420.0 17419.0 17121.0 27410.0 36784.0 31080.0 42535.0 34948.0 True False 20634.30584109729 16503.618364722104 21013.375890489846 19624.243613989696 19301.25786588252 25515.211216199685 35004.61739147412 33399.34742104217 32052.819189799055 32717.58871951187 0.6306792966314037 0.5044264877282904 0.6422654209219901 0.5998071490606622 0.58993521898427 0.7798622152427485 1.0699021156959019 1.0208376817550653 0.9796815854795446 1.0 14.997778805378298 2.4617627110849685 2.8995503595118066 1.021768535238673 0.5922985710248247 0.9545329074365331 0.043495334131620204 0.04844481181031819 0.8354589956362297 0.016133407176764758 0.013672042530495787 289.57609755342827 -2.4617627110849685 -0.4294699642138482 RGSS(ph)DPTVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSSDPTVQR 10 1 H7BXG1;A0A2R8YDG4;H7BZJ9;H7BZI2;Q2KHT3;Q2KHT3-2 H7BXG1;Q2KHT3 CLEC16A Protein CLEC16A 1 RGS(0.353)S(0.647)DPTVQR 63.8 0.046693 257300000.0 72785.0 64917.0 48386.0 50922.0 53068.0 72462.0 64544.0 52891.0 71077.0 80976.0 True False 72393.13364717367 67077.72310184487 55198.32822134861 57368.71997884967 59825.89524132082 67452.87249720037 61421.76013797595 56837.99499505604 53561.0257330045 75808.04235295855 0.9549532134086086 0.8848365030920368 0.7281328802074571 0.7567629792066612 0.7891761003769806 0.8897851785057722 0.810227493436636 0.7497620731375848 0.706534875068096 1.0 16.210063289255245 4.442163963936886 5.479541126990628 0.7940230282940036 0.939929950463602 0.2536663254064867 0.08217809179636028 0.1855582087727634 14.47120132465178 0.01914169002258718 0.05785873601743551 27679.864763180216 -4.442163963936886 0.14590692216959833 RGSS(ph)PGSLEIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGSSPGSLEIPK 12 1 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 RGS(0.215)S(0.785)PGSLEIPK;RGS(0.148)S(0.847)PGS(0.005)LEIPK 133.54 0.00017099 470700000.0 558480.0 480580.0 456690.0 385380.0 420240.0 575340.0 567810.0 504090.0 728950.0 554960.0 True False 555473.2057329618 496575.81478325557 520987.98237935983 434169.0684860987 473755.07304237265 535568.100004682 540342.8610551581 541707.7555171543 549310.0399295645 519541.97767484025 1.069159431965302 0.95579536615238 1.0027832297805677 0.835676590425244 0.9118706349054172 1.0308466361112245 1.0400369638530658 1.0426640748867202 1.0572967412334 1.0 18.986880794377978 2.6583460431685917 7.154670810051025 1.0382538566068649 0.9512384815599624 0.31730344892408224 0.05776766281342565 0.3208764545612403 24.877794443430695 0.01948097063221727 0.018357389806460147 455.35073630422164 -2.6583460431685917 -0.08701537504690249 RGSSGS(ph)VDETLFALPAASEPVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 RGS(0.318)S(0.105)GS(0.48)VDET(0.097)LFALPAASEPVIR 235.86 2.5579999999999998e-37 700940000.0 205260.0 207100.0 187030.0 169930.0 177400.0 248040.0 196590.0 199590.0 231330.0 216800.0 True False 204154.90296652977 213993.1983054064 213362.1983060976 191443.12057668468 199990.8384678205 230893.57862335516 187080.1906532704 214484.4192974839 174321.82116318817 202963.63838818172 1.005869349740714 1.0543425413774359 1.051233610120981 0.9432385135436759 0.985353041835624 1.137610561463012 0.921742397500122 1.0567627827368167 0.8588820270840133 1.0 17.63086176137512 1.2519026846683134 24.99999381306126 0.9294409696791219 1.0189998266184366 0.226835647835387 0.06651551287980212 278.38301602104207 521632.1239849379 0.04205280565717162 0.01516072065369013 17.86087309222563 -1.2519026846683134 0.08955885693931465 RGSSGSVDET(ph)LFALPAASEPVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 RGS(0.238)S(0.238)GS(0.238)VDET(0.287)LFALPAASEPVIR 70.76 0.013392 16517000.0 12325.0 13315.0 13631.0 11611.0 12212.0 12829.0 12765.0 11898.0 15425.0 14279.0 True False 12258.643569436223 13758.181725912536 15550.126317224054 13080.951409497342 13767.125813805102 11942.161426217644 12147.508182964526 12785.889176819815 11623.715434410498 13367.701995133062 0.9170344741302112 1.0292106848971978 1.1632609945139092 0.9785489992415959 1.0298797668303394 0.8933593395907217 0.9087207500127706 0.9564762276623855 0.8695372950894987 1.0 13.7064638565609 2.749230646538997 24.213001668689323 0.9243640299114618 1.0291569789410608 0.3509143082496652 0.06639352746511082 503.99192763662234 1143684.2193180446 0.02033235299428624 0.021354331688410617 561.3460183688368 -2.749230646538997 0.10479294902959901 RGT(ph)FEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTFEK 6 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 RGT(1)FEK 79.47399999999998 0.039294 160900000.0 161780.0 162540.0 145610.0 158560.0 156820.0 198800.0 212750.0 195980.0 281910.0 189140.0 True False 160908.99445544768 167950.04564249518 166110.6223351913 178633.67974247682 176790.0974550374 185057.42392486296 202458.46971607555 210605.02276627562 212437.05790046448 177068.92326909932 0.9087365048857687 0.9485009709312696 0.9381127939810521 1.0088369909552082 0.9984253260882026 1.045115204341211 1.1433879304071366 1.1893957385521006 1.1997421906588017 1.0 17.433951506517175 2.6523346262515926 1.24337018507511 1.1571892685177236 0.9445117255064812 0.6659027044075576 0.0574520341794589 0.23425123510220605 0.7419130023490438 0.02722876703841763 0.023492856380811566 449.0912839271519 -2.6523346262515926 -0.21267754301124242 RGT(ph)FSDQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNR 31 1 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RGT(0.5)FS(0.5)DQELDAQSLDDEDDNMHHAVYPAVNR;RGT(0.5)FS(0.5)DQELDAQSLDDEDDNMHHAVYPAVNR 140.01 1.0631e-08 395380000.0 31561.0 38796.0 31512.0 38428.0 39327.0 39071.0 38441.0 21841.9 27337.0 29128.0 True False 31391.079082756747 40087.30140732275 35948.61569278586 43292.980859888405 44335.06034060869 36370.11373324109 36581.4619711194 23471.853488920882 20600.16264703271 27269.02610226458 1.151162456812121 1.4700672204789034 1.3182948139757906 1.5876247540902497 1.625839521160121 1.3337518397923533 1.3415023269966162 0.8607514401466521 0.7554418177524115 1.0 14.734975555691038 1.780872929723428 3.334197689865838 0.8458989301788008 1.4250791714017552 0.7516769383413384 0.14022106364154338 0.10665463473799232 2.2837689469488454 0.07749350178096981 0.038692984186130944 60.37719458208525 -1.780872929723428 0.5791802412229544 RGT(ph)GQS(ph)DDSDIWDDTALIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 RGT(0.75)GQS(0.778)DDS(0.472)DIWDDTALIK 82.477 0.0038096 63338000.0 46427.0 39117.0 37163.0 37589.0 39912.0 46197.0 45885.0 46933.0 67793.0 48197.0 True False 46177.04219052459 40418.98569827414 42395.22737341336 42347.763545913 44994.55662304204 43003.510126040725 43665.36725227789 50435.37878094502 51086.323529659094 45121.02619647231 1.0234040775015627 0.8957904796375001 0.9395891660089934 0.938537243402143 0.9971971033442462 0.9530703033833672 0.967738789054664 1.1177799583132753 1.132206597146347 1.0 15.461512259159514 1.7792411957050491 6.327731184601132 1.0932874771391898 0.9560694155406068 0.5988239357275512 0.04624832929035975 0.11190999482983627 10.28744510612225 0.02078714692808174 0.011607027736372443 60.150770625723666 -1.7792411957050491 -0.13721806159858307 RGT(ph)GQSDDSDIWDDTALIK ddPTM_BT-474_Trastuzumab_2h_R1 4 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 RGT(0.622)GQS(0.378)DDSDIWDDTALIK;RGT(0.446)GQS(0.446)DDS(0.107)DIWDDTALIK;RGT(0.477)GQS(0.477)DDS(0.046)DIWDDTALIK;RGT(0.499)GQS(0.499)DDS(0.002)DIWDDTALIK 202.17 3.3115e-16 1763130000.0 225392.0 267717.0 244242.0 235797.0 255147.0 286255.0 305093.0 278617.0 370030.0 305555.0 True False 224178.51451540517 276627.79850665625 278629.15061047894 265648.87602318916 287638.4580752485 266466.8656217889 290334.4860215587 299408.81532845926 278841.06464796857 286054.218301203 0.783692391766636 0.9670467373264844 0.9740431456147738 0.9286661724508188 1.005538249998388 0.9315257338425632 1.0149631344217716 1.046685544812328 0.9747839633476781 1.0 18.125929093681403 5.452952727234111 1.284302466685198 0.991065077603734 7.82586678719034e-18 0.7444083351663924 0.03483561351266681 3.9507834769337395 1.4855576771943464 0.010399519338374012 8.062610805634131 283761.0138998398 -5.452952727234111 -0.991065077603734 RGT(ph)S(ph)PRPPEGGLGYSQLGDDDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGTSPRPPEGGLGYSQLGDDDLK 23 2 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 2 RGT(0.993)S(0.972)PRPPEGGLGY(0.012)S(0.023)QLGDDDLK;RGT(0.992)S(0.832)PRPPEGGLGY(0.009)S(0.167)QLGDDDLK 82.089 0.010093 351990000.0 454620.0 243720.0 218520.0 212979.0 214610.0 344210.0 281950.0 325320.0 499830.0 309650.0 True False 452172.3764330298 251832.07286814897 249285.71659011082 239942.11956277114 241939.31140687127 320415.57288318477 268311.00134640397 349597.03034148755 376653.59387885884 289887.8718952974 1.559818192726417 0.8687223484779194 0.8599384132915662 0.8277066508302707 0.834596183086458 1.1053086518876978 0.9255682191606601 1.2059732891059207 1.2993078717515294 1.0 18.145135450738774 1.7056280098834802 6.911320757133884 1.1881656398574647 0.9786776419348197 0.10784011822110895 0.21790488441423908 0.23777246248308825 26.086842189817418 0.10676994871834843 0.055285357129530636 50.77243705867433 -1.7056280098834802 -0.20948799792264505 RGT(ph)SLMEDDEEPIVEDVMMSSEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTSLMEDDEEPIVEDVMMSSEGR 24 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR 91.873 0.0052176 25476000.0 12425.0 9556.2 6758.2 8404.1 9462.3 11148.0 9841.7 7174.1 13475.0 10063.0 True False 12358.10518054727 9874.27234015512 7709.695816672555 9468.058198308217 10667.267817553884 10377.364999569283 9365.619372054993 7709.467771341657 10154.266805749206 9420.770724632257 1.311793434080169 1.0481384834403307 0.8183720888689291 1.005019490979896 1.1323137065274758 1.1015409782169778 0.9941457706392258 0.8183478822156134 1.0778594557236274 1.0 13.201629377952356 4.702993857337083 3.9675174255587646 0.9848312167218303 1.331368869580504 0.46865482185520513 0.10047669528673668 0.19170324354610085 5.97449919101672 0.02633908307061124 0.17740088929660341 50465.41596825643 -4.702993857337083 0.34653765285867366 RGT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_BT-474_Trastuzumab_2h_R1 3 RGTSPRPPEGGLGYSQLGDDDLK 23 2 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK;RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK;RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK 218.0 1.0993e-30 1389320000.0 1157100.0 837480.0 795700.0 758420.0 745510.0 1072450.0 955670.0 1103520.0 1413440.0 995080.0 True False 1150870.3021658945 865355.0155326496 907727.6436516158 854435.8942374451 840446.2795160377 998314.0557757507 909440.5910860718 1185870.2659610177 1065116.6511256509 931573.1424691502 1.2354051976160385 0.9289179518840696 0.9744029773611426 0.9171967881907248 0.9021795940664634 1.07164323472197 0.9762417459519971 1.272976014334042 1.1433526822193922 1.0 19.82930952125791 1.759275440769696 24.999999999960846 1.1646568071810923 0.9927807446563514 0.2335587682833714 0.11090353775157552 10.779504282618552 13020.700417403761 0.04931689173080998 0.02734910929950337 57.448069717718056 -1.759275440769696 -0.17187606252474097 RGT(ph)SPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK 46 3 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 RGT(0.323)S(0.323)PRPPEGGLGY(0.314)S(0.041)QLGDDDLKETGFHLTTTNQGASAAGPGFSLK 127.29 8.7674e-11 488470000.0 117720.0 113230.0 110840.0 117100.0 115320.0 160330.0 156570.0 175410.0 213360.0 173750.0 True False 117086.20859992152 116998.79210101972 126445.30856144923 131924.84799346645 130005.31844480884 149246.7644762239 148996.11094451672 188499.984913932 160780.28687752507 162661.12624514088 0.7198167829200014 0.7192793681060276 0.7773541932255402 0.8110410338278805 0.7992402453237806 0.9175318523941568 0.9159908970504108 1.158850853091047 0.9884370690709391 1.0 17.31150998251948 2.4818175860055747 1.1057303123873472 1.0637733741171678 0.7475302288358927 0.818759752638728 0.05710376840299476 0.18659643502341222 0.46016711011477207 0.03425124067965704 0.024442731441597747 303.2617145441228 -2.4818175860055747 -0.31624314528127506 RGTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNR 31 1 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RGT(0.369)FS(0.631)DQELDAQSLDDEDDNMHHAVYPAVNR 296.15 1.0991999999999996e-81 357940000.0 46755.0 52617.0 51914.0 46237.0 49343.0 62154.0 50995.0 31270.0 64976.0 53124.0 True False 46503.27627496882 54368.3250373518 59223.03995542288 52090.599459213605 55626.53857112558 57857.44027477833 48528.177030182254 33603.526185842624 48963.535433792946 49733.58083825535 0.9350478186199341 1.0931914437082193 1.1908058691375825 1.0473928999527262 1.118490517544583 1.1633475671688225 0.9757627786345541 0.6756707564478165 0.9845165903704629 1.0 15.601932689065544 1.9955082129700648 9.869999478626603 0.8443694465709327 1.09318804390799 0.41241947576370197 0.10701417931403082 0.09777295419690427 146.81425895073133 0.04059551234808146 0.02830956425627741 98.97105801707092 -1.9955082129700648 0.24881859733705725 RGTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNRFS(ph)PS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNRFSPSPR 37 2 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 3 RGT(0.474)FS(0.523)DQELDAQS(0.012)LDDEDDNMHHAVY(0.372)PAVNRFS(0.64)PS(0.978)PR 45.72 0.056501 36332000.0 13102.0 14794.0 11459.0 14988.0 14923.0 14019.0 15125.0 8652.7 19264.0 15437.0 True False 13031.460287769043 15286.409346838152 13072.327596586492 16885.479263245736 16823.355594449193 13049.899527176327 14393.345966889032 9298.408411520322 14516.645324374958 14451.797443719379 0.9017189964444456 1.0577514254797065 0.9045468321497689 1.1683999398001537 1.1641012586818722 0.9029949096641744 0.9959554182060758 0.6434084374439754 1.0044871844424972 1.0 13.818961318771672 2.255048175781048 2.3755619386311193 0.8483238845672554 1.0356566395660431 0.12604583810116976 0.13463579132878442 0.3908507108531612 4.513215645900708 0.058672310832693475 0.0411880152332129 179.9070472852378 -2.255048175781048 0.18733275499878776 RGTGGVDTAATGGVFDISNLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTGGVDTAATGGVFDISNLDR 22 1 P12532;P12532-2 P12532 CKMT1A Creatine kinase U-type, mitochondrial 0 116.65 0.00025103 118240000.0 48024.0 78286.0 85966.0 99351.0 87818.0 82177.0 89474.0 67184.0 84820.0 73559.0 False True 47765.444119967986 80891.70218511364 98069.2655701331 111928.82641331246 99001.10176193395 76496.29741385054 85145.8007961276 72197.6112334395 63917.247529769724 68864.40164297174 0.6936159028522234 1.1746519283576669 1.4240923210017027 1.6253510339581356 1.4376237852933982 1.1108249776197352 1.2364269312549458 1.0484025056624875 0.9281609366352939 1.0 16.071470776918755 1.7255953339321954 1.602231929851283 0.957052702365191 1.277775983649212 0.19311334249170076 0.23433216055901931 0.5992501112690813 3.01993933534087 0.19292180612257623 0.07523513166955587 53.16126833869499 -1.7255953339321954 0.32072328128402094 RGTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 RGT(0.086)GQS(0.915)DDS(1)DIWDDTALIK 182.02 1.0557e-13 75641000.0 59958.0 57328.0 50533.0 45714.0 59947.0 68735.0 59285.0 58572.0 97858.0 64085.0 True False 59635.19278996001 59236.12782449217 57647.60715929006 51501.38771283801 67580.89511629342 63983.51123478603 56417.158059306865 62942.940062589485 73742.20713001903 59995.04043407118 0.9940020434771336 0.9873504108991645 0.9608728778612838 0.8584274190036277 1.1264413629416314 1.0664800085450028 0.9403636975843683 1.049135722006184 1.2291383853812827 1.0 15.872555622988827 3.22877831638559 24.999994264227187 1.0606610099832827 0.9535843865125478 0.34568621025018675 0.07931665450432153 259.24687012619535 662539.7376945467 0.023454975082281004 0.028358575423616687 1693.4731542310408 -3.22877831638559 -0.10707662347073488 RGTS(ph)PRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK 46 3 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;Q9UQ88-5;Q9UQ88-10 P21127-2;Q5QPR3 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 RGT(0.385)S(0.432)PRPPEGGLGY(0.088)S(0.092)QLGDDDLKET(0.001)GFHLTTTNQGASAAGPGFSLK 57.926 0.0069462000000000005 528100000.0 203130.0 200980.0 171060.0 182730.0 190390.0 246410.0 258120.0 220800.0 352500.0 271510.0 True False 202036.37064986475 207669.49780502453 195143.76111982568 205863.5992642712 214635.03797005877 229376.25668674803 245633.74948584446 237277.21719968176 265631.0982580035 254181.99934859434 0.7948492464754942 0.8170110327923698 0.7677324185816892 0.8099062868017749 0.844414783580723 0.9024095226042076 0.9663695702895684 0.9334933937405664 1.0450429178256144 1.0 17.955502339673288 2.47553924828763 0.8592865534003961 1.003924463886071 0.7885612066215688 0.916276831031221 0.026170461860995607 0.16237844262193885 0.2414939209603139 0.018592753636635973 0.013356493766950119 298.9091766514995 -2.47553924828763 -0.21536325726450212 RGVMLAVDAVIAELKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RGVMLAVDAVIAELKK 16 2 P10809;E7EXB4;E7ESH4 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 145.62 6.762699999999999e-07 136831000.0 334960.0 322880.0 325270.0 282030.0 346920.0 565430.0 372780.0 337630.0 624450.0 432810.0 False True 333156.6125775542 333626.8656149187 371065.18870247743 317734.96908281255 391098.20564406103 526343.1549790511 354747.20724210894 362825.6650504013 470562.66470130475 405187.69525271654 0.8222278624965736 0.8233884432419273 0.9157859260041034 0.7841673693586388 0.9652272520273157 1.2990107082367583 0.875513277916429 0.8954508473513887 1.1613449031511525 1.0 18.628230837451902 3.064037156413451 6.533358841714771 1.0249800952850803 0.843379400108919 0.39988570725789696 0.11965606442356948 0.25236723579012094 20.020831813127423 0.03656592310619532 0.043756877649998555 1158.8765005242935 -3.064037156413451 -0.1816006951761613 RGVTIKPTVDDD ddPTM_BT-474_Trastuzumab_2h_R1 4 RGVTIKPTVDDD 12 2 P41091;Q2VIR3 P41091 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein 0 ;;; 150.14 0.00026963 2421060000.0 1778900.0 1911000.0 1868060.0 1786040.0 1848260.0 2122430.0 2155020.0 2082490.0 2883740.0 2216500.0 False True 1769322.6000543719 1974606.4797761072 2131066.6105314037 2012152.4808731927 2083624.9555047008 1975711.4097628111 2050773.4496241447 2237895.978469951 2173080.9171362678 2075041.07235888 0.852668712741685 0.9515987447570857 1.0269997249301839 0.969692844964174 1.0041367292725742 0.9521312305962445 0.9883049916177572 1.0784827386216216 1.0472471827586225 1.0 20.984708462073876 5.835545588873773 0.8627315292733782 1.0149660292572984 3.2210248999432434e-19 0.6393116598867336 0.03546766489023403 8.832904501726569 1.2019776160600908 0.012861761824103996 13.187184088191357 684771.3613166292 -5.835545588873773 -1.0149660292572984 RHAS(ph)APSHVQPSDSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHASAPSHVQPSDSEK 16 1 O60343-2;O60343-3;O60343;A0A3B3IRT3 O60343-2 TBC1D4 TBC1 domain family member 4 1 RHAS(0.993)APS(0.007)HVQPSDSEK 136.14 8.9538e-06 202270000.0 265600.0 187240.0 205130.0 217940.0 191630.0 233610.0 208650.0 132970.0 360750.0 243460.0 True False 264170.03911093436 193472.17021102965 234010.5209780772 245531.18165410828 216032.94462000244 217461.09055878897 198556.80237959628 142892.89660797868 271847.9963023398 227922.17436340722 1.1590361484079748 0.8488518975891777 1.0267123926475117 1.0772588596957864 0.9478364499785432 0.954102386773747 0.871160530712603 0.6269372298113705 1.1927228978997702 1.0 17.798181764498075 2.5567329051380283 2.256688263899544 0.8657218168011546 1.0097124622382707 0.020918252896339862 0.15451219331618352 0.6084772905321258 6.169661729783493 0.05873293306210516 0.05168650147095188 360.3569522159163 -2.5567329051380283 0.14399064543711615 RHDAETNITTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHDAETNITTEK 12 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;H7C0K6 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A;Kinesin-like protein 0 83.617 0.0082431 100860000.0 102720.0 139410.0 132420.0 129700.0 117900.0 130960.0 126190.0 107690.0 144220.0 137540.0 False True 102166.96693326492 144050.1775748755 151063.58498472656 146120.00670155926 132913.86615195058 121907.04344668028 120085.70760738676 115726.37463873976 108678.91344899079 128762.07944608174 0.7934553975267746 1.1187313702493873 1.1731993272754144 1.1348062048248144 1.032243861886429 0.9467619967859252 0.932617026099457 0.8987613056311303 0.8440288780401326 1.0 16.974348255389003 2.7084054977577634 2.5442024014398585 0.9117166962636043 1.0692051487889578 0.2694399323446829 0.10339978256193968 0.35046392369959717 4.492497559372056 0.03654772555309212 0.03571386762798113 510.9818775614614 -2.7084054977577634 0.15748845252535348 RHDS(ph)LHDPAAPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RHDSLHDPAAPSR 13 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 RHDS(1)LHDPAAPSR;RHDS(1)LHDPAAPSR 113.54 0.00038261 978060000.0 473570.0 370580.0 365300.0 444150.0 396240.0 425150.0 374870.0 126178.0 526150.0 320780.0 True False 471020.3517385728 382914.53127965983 416731.0647554798 500379.34446027456 446698.8153015182 395760.38119545043 356736.10595753306 135594.04307890136 396487.38254879013 300307.5457664251 1.5684599284259269 1.2750746249229623 1.3876809644989982 1.6662230154198738 1.487471166138976 1.3178502730772779 1.1879025718354652 0.45151726951398174 1.3202711291749303 1.0 18.19608120009122 2.085354586502895 3.3803398192922103 0.8557790588045835 1.452928660339437 0.5021647807873185 0.2298775097733181 0.1666687504425746 3.762875905192176 0.09644984392453626 0.06437334905483527 121.71793801488296 -2.085354586502895 0.5971496015348534 RHEAFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RHEAFEK 7 1 Q01082;A0A087WUZ3;Q01082-2;P11277-3;P11277;P11277-2;H0YJE6;Q01082-3 Q01082;Q01082-3 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic 0 ; 97.635 0.019004 63466000.0 85382.0 115665.0 94532.0 101709.0 101699.0 99292.0 98599.0 58551.0 109740.0 97510.0 False True 84922.31279883199 119514.83960403089 107841.28391312635 114585.34897154121 114649.76483280108 92428.17774822684 93829.38968524251 62920.372935953674 82696.04744066179 91286.82831748891 0.9302800235700862 1.3092232670015331 1.1813455007776397 1.2552232461513697 1.2559288886021716 1.0125028928244544 1.027852445030851 0.6892601495269528 0.9058924377682505 1.0 16.47811908979274 2.2769679335315858 1.9670629777056807 0.8416225904033452 1.192813856951331 0.5101924085477958 0.12869586247531148 0.22149361052928587 1.7408938342837572 0.05850694839573078 0.03956941092711131 189.2203901150847 -2.2769679335315858 0.3511912665479857 RHEGLPGLAVQWGAIGDVGILVETMSTNDTIVSGTLPQR ddPTM_BT-474_Trastuzumab_2h_R1 5 RHEGLPGLAVQWGAIGDVGILVETMSTNDTIVSGTLPQR 39 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 355.05 8.637899999999996e-146 1925850000.0 529383.0 597772.0 602537.0 685747.0 643324.0 666283.0 672175.0 277868.0 658045.0 613141.0 False True 526532.8607479805 617668.4796591947 687368.9722545099 772562.4998887755 725247.4981199119 620224.4244714768 639659.3272921416 298603.9211451139 495878.6271012418 574009.8164435796 0.9172889481407228 1.0760590881286896 1.1974864411087516 1.34590468273762 1.263475775751298 1.0805118775045195 1.1143700141842692 0.520206994011337 0.86388527320592 1.0 19.13071588383494 1.8575046184259638 7.6519899619333485 0.7518180526027921 1.154376048543823 0.5019006195528966 0.15696005480309483 0.19098100704221743 11.207277284489793 0.06839646984466398 0.04247621111253262 72.02854109422834 -1.8575046184259638 0.4025579959410309 RHEHPPNPPVS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 6 RHEHPPNPPVSPGK 14 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK 127.97 3.5965e-05 2658576000.0 1313670.0 1116056.0 988087.0 959855.0 949208.0 1321230.0 1321090.0 461345.0 1727620.0 1022469.0 True False 1306597.346682458 1153203.2492899022 1127201.060993836 1081372.5445838505 1070084.0124034008 1229896.4799408785 1257183.8296461124 495772.9065624425 1301871.199921963 957214.1530402487 1.3650000290243498 1.2047494759946498 1.1775850340424707 1.1297080607816516 1.1179149503845731 1.2848707638040577 1.3133778116977453 0.5179331134916852 1.3600626315302948 1.0 19.868482202665113 1.8000452607763484 24.9999999985245 0.9067718012144391 1.2190172787243596 0.2530932221683908 0.20494627715529348 196.97231215207444 80108.50083031763 0.08360825747917436 0.05107221185409472 63.10231042551555 -1.8000452607763484 0.3122454775099205 RHEILQWVLQTDSQQ ddPTM_BT-474_Trastuzumab_2h_R1 2 RHEILQWVLQTDSQQ 15 1 Q96AG4 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 0 ; 169.09 1.9515e-06 2306500000.0 532720.0 847180.0 986920.0 759110.0 1014180.0 1078020.0 904750.0 327730.0 855630.0 783850.0 False True 529851.8947107556 875377.8741688753 1125869.7575375803 855213.2481666972 1143329.8114841837 1003499.0147861214 860983.7860193625 352186.87677921966 644771.4513545966 733824.0219122512 0.722042177537374 1.1928989076805538 1.5342503432958057 1.165420077061693 1.5580435872142926 1.3674927296208317 1.1732837305812764 0.4799336983565431 0.8786458770788192 1.0 19.48507460677801 1.8969139188348074 6.480983253937381 0.7435162515699358 1.2753362885847783 0.4091385324650799 0.2519125130098493 0.2093897628381235 11.203621020430885 0.10993547815112473 0.0673399961894734 78.87037737745143 -1.8969139188348074 0.5318200370148425 RHES(ph)EEGDSHR ddPTM_BT-474_Trastuzumab_2h_R1 3 RHESEEGDSHR 11 1 Q6UN15;Q6UN15-5;Q6UN15-3;H0Y8P7 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 RHES(1)EEGDSHR;RHES(1)EEGDSHR;RHES(1)EEGDSHR 148.48 1.6369000000000002e-05 677212100.0 55349.6 59557.2 50358.0 51622.3 51700.2 47455.1 50119.8 28499.2 54670.1 53891.1 True False 55051.603903518684 61539.52539891233 57447.96868041731 58157.6778870463 58283.91401890652 44174.64063428957 47695.31379777093 30625.955020005298 41197.386396808135 50451.723859508056 1.091173892428727 1.2197705190466883 1.1386720667938237 1.1527391620749545 1.1552412793903457 0.8755823836129335 0.9453653938681491 0.6070348578234671 0.8165704409135692 1.0 15.622615944442517 2.5621946194095986 1.7704196355564588 0.7829767071481757 1.1611496880985817 0.6595270212455173 0.10596651445769198 0.18358734625688172 1.1569196271392146 0.043090777185235386 0.036687027054712655 364.9174399217776 -2.5621946194095986 0.37817298095040597 RHES(ph)EEGDSHRR ddPTM_BT-474_Trastuzumab_2h_R1 4 RHESEEGDSHRR 12 2 Q6UN15;Q6UN15-5;Q6UN15-3;H0Y8P7 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 RHES(1)EEGDSHRR;RHES(1)EEGDSHRR;RHES(1)EEGDSHRR;RHES(1)EEGDSHRR 95.428 0.0028741 146995000.0 28779.85 33711.7 29635.4 34442.7 36775.24 28842.4 29730.3 22895.58 34633.6 36379.1 True False 28624.902485341925 34833.773555347 33807.806724485505 38803.14228851042 41458.34883007519 26848.59277570659 28292.131808224854 24604.164440999524 26098.6133464635 34057.35469228551 0.8404910699604595 1.0227973919312459 0.9926727143063601 1.1393469234209168 1.2173097178174592 0.7883346495430601 0.8307201796454684 0.7224332207625253 0.7663135784405245 1.0 15.055678761702417 2.710065173977984 24.38805412034446 0.7986426265512009 1.0440372515454088 0.4746874005890621 0.1149612329331464 428.44945760686534 366691.31548843795 0.03770065957258761 0.03555162299986477 512.9383541719815 -2.710065173977984 0.24539462499420794 RHGAPAAPS(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RHGAPAAPSPPPR 13 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR 140.46 2.4114e-05 973840000.0 271822.0 344121.0 312587.0 338715.0 321353.0 326475.0 347475.0 181483.0 359626.0 278884.0 True False 270358.54055426334 355574.85945946275 356596.53254508914 381596.28427076834 362275.3997415423 303906.5516894849 330666.30676659587 195026.18301200107 271000.99104151083 261085.38435539548 1.0355177147191243 1.3619102437976613 1.365823419895775 1.4615765842768533 1.3875744160707388 1.1640121197891349 1.2665063867247552 0.7469823846842645 1.0379784058406656 1.0 17.99416217181113 1.7581451377325272 24.999999999995865 0.9108533048770064 1.3026793905995115 0.6013453423080428 0.135212793344041 5.310046761033197 6784.681915667527 0.06252266784383513 0.03467261688622073 57.29874868149065 -1.7581451377325272 0.3918260857225051 RHNS(ph)WSSSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 RHNSWSSSSR 10 1 Q96F86;H3BPW9;H3BQ37 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 1 RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(0.999)WS(0.001)SSSR;RHNS(1)WSSSSR 169.04 2.9115e-06 1312538000.0 231908.0 312931.0 295316.0 340798.0 326371.0 284813.0 298195.0 194515.1 359884.0 302378.0 True False 230659.43309540107 323346.71916421596 336893.9258673126 383942.99185719364 367932.4122975263 265124.547687686 283770.16863447794 209030.80448966406 271195.4103985338 283079.9771611697 0.8148207280802368 1.1422451082794904 1.1901015721627823 1.3563057186435983 1.29974721627184 0.9365711780340406 1.0024381500953539 0.7384160709136054 0.9580169290607597 1.0 18.110850182451667 2.6128354228831294 5.683654667343261 0.8983778604405288 1.1714229483708873 0.3661302246439626 0.15157193662159654 0.23656884424184654 10.003838421126767 0.05223653780958196 0.04905375484844607 410.0486844366726 -2.6128354228831294 0.27304508793035853 RHPKGEEGS(ph)DDDETENGPKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RHPKGEEGSDDDETENGPKPK 21 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 RHPKGEEGS(1)DDDETENGPKPK;RHPKGEEGS(1)DDDETENGPKPK 206.94 2.8112e-22 448430000.0 309210.0 268060.0 192261.0 232530.0 261500.0 383380.0 383940.0 243310.0 872230.0 358120.0 True False 307545.24771646096 276982.21505430824 219329.6776374302 261968.27415816174 294800.47496806725 356877.84297944687 365367.355406769 261467.02770314587 657280.6037832007 335264.47499804245 0.9173213109389435 0.8261603471585395 0.6541989801893291 0.7813779678258227 0.8793072244525416 1.0644666214084586 1.0897884585263689 0.7798828900815469 1.9604838949520031 1.0 18.354940096073125 1.264699724993701 24.999707015551948 1.480242688630733 0.8746101769201836 0.4891298886731451 0.24780088960957916 144.5706623827293 138269.22803941957 0.15427461380388546 0.05629762659932175 18.39499715479825 -1.264699724993701 -0.6056325117105493 RHPPLYQAGLTPPLS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RHPPLYQAGLTPPLSPPK 18 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 RHPPLYQAGLT(0.278)PPLS(0.722)PPK;RHPPLYQAGLT(0.004)PPLS(0.996)PPK 121.47 2.3381e-05 1033230000.0 517460.0 483020.0 436850.0 427870.0 410660.0 511070.0 551210.0 458850.0 759550.0 547390.0 True False 514674.052855211 499097.0287082446 498354.68283173116 482038.2981295001 462955.1168274815 475740.9338293752 524545.8664733163 493091.71699308907 572369.0799485566 512455.10155584273 1.0043300404125775 0.9739331839861829 0.9724845773194531 0.9406449397537551 0.903406201678788 0.9283563230905474 1.0235938034000742 0.9622144759531804 1.116915566282415 1.0 18.96706608373734 1.2629426903999557 24.864082861337494 1.0584577540812812 0.9632633561157121 0.44878512878448595 0.04204023473526004 162.55153179733796 165765.7094648968 0.028121636402559158 0.010258416178494772 18.320726456900374 -1.2629426903999557 -0.09519439796556906 RHPQHLHQQHHGDAAQHTR ddPTM_BT-474_Trastuzumab_2h_R1 3 RHPQHLHQQHHGDAAQHTR 19 1 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 0 ;; 47.754 0.049614 24577400.0 7960.7 8787.6 6868.4 8659.1 6700.4 6477.39 7091.6900000000005 0.0 7791.200000000001 2495.1 False True 7917.840475716918 9080.089953783621 7835.41101879698 9755.341172162473 7553.656223617728 6029.623275435961 6748.637861813374 0.0 5871.163156731217 2335.8605818374176 3.389688809889777 3.8872568099253195 3.3544001211894017 4.176337084505616 3.233778711945182 2.581328407320005 2.8891441185692726 0.0 2.5134904036579466 1.0 11.189738452760922 2.1851680787290593 1.5600029339970969 1.1106353706834753 3.625670913632646 0.6568920006211618 0.7184164860925567 0.21207434818431573 1.0049460848400287 0.3989365642346958 0.22844916092357428 153.16801310566328 -2.1851680787290593 2.5150355429491706 RHPT(ph)GTTPPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHPTGTTPPVK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 RHPT(0.482)GT(0.482)T(0.036)PPVK 58.831 0.060845 170760000.0 304120.0 284720.0 265600.0 246860.0 244320.0 358440.0 354260.0 288780.0 451320.0 397460.0 True False 302482.6517109086 294196.73308312567 302994.17136341514 278112.45068887365 275432.7038019052 333661.88647700154 337123.0903953794 310330.2299951277 340098.23337816144 372093.7625173737 0.8129205113906879 0.7906521493205334 0.8142952177255801 0.7474257262667446 0.7402239208163152 0.8967145383454856 0.9060165053952994 0.8340108361279983 0.9140121862759838 1.0 18.50530668091588 2.7257565278117912 24.4388716389309 0.8942396796449052 0.7816069825198565 0.6647196062684162 0.04512241213488642 390.7241292344328 745764.7443539228 0.01452407785369248 0.013777747080905185 531.8100347680572 -2.7257565278117912 -0.11263269712504875 RHPTGTT(ph)PPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHPTGTTPPVK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 RHPT(0.109)GT(0.109)T(0.781)PPVK 54.95 0.075254 532540000.0 673330.0 578210.0 530780.0 514220.0 504000.0 770550.0 754490.0 627830.0 964780.0 835580.0 True False 669704.866093995 597455.3703146738 605509.2103775349 579320.1992758352 568181.412557957 717283.6921795931 717992.4362683052 674681.862656143 727022.8963896643 782252.5690239717 0.8561235751895272 0.7637627461679388 0.7740584490927755 0.7405794780561241 0.7263401042797284 0.9169464193317496 0.9178524490678952 0.862485966007058 0.9293966235186439 1.0 19.577274965917784 2.728788387296676 24.82746938929884 0.9118354509396346 0.7700552072455927 0.7348697031477558 0.04563145553193281 341.21852031091714 866903.1766990795 0.014619582944671564 0.013943594266880693 535.53565083367 -2.728788387296676 -0.14178024369404185 RHRPS(ph)PPAT(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHRPSPPATPPPK 13 2 A9Z1X7;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RHRPS(1)PPAT(1)PPPK 82.24799999999998 0.024317 47857000.0 90766.0 87127.0 62306.0 63754.0 78211.0 93639.0 98248.0 54744.0 119760.0 79122.0 True False 90277.32594105051 90026.96952561625 71078.14322653951 71825.24986315508 88170.70725708402 87165.95633249616 93495.36889619257 58829.27526439939 90246.75270178293 74072.36622024776 1.2187720002439062 1.2153921107087204 0.9595770575925011 0.969663229733865 1.1903319922967774 1.1767675420725152 1.2622165817977542 0.7942135274776513 1.2183592519974593 1.0 16.176647803961927 4.271077525666437 22.984967767012137 1.0643003402672986 1.2170830165207704 0.15116219370048767 0.13727640938031033 149.28667566298003 105519.5678265313 0.03432302195997921 0.09397052034556938 18667.12886973759 -4.271077525666437 0.15278267625347186 RHS(ph)ASNLHALAHPAPSPGSCSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RHSASNLHALAHPAPSPGSCSPK 23 1 P47974 P47974 ZFP36L2 Zinc finger protein 36, C3H1 type-like 2 1 RHS(0.5)AS(0.5)NLHALAHPAPSPGSCSPK;RHS(0.5)AS(0.5)NLHALAHPAPSPGSCSPK 106.51 0.00054243 1312180000.0 635090.0 540450.0 587060.0 542690.0 591840.0 753460.0 625740.0 89155.0 885190.0 503210.0 True False 631670.7460051322 558438.5515410764 669712.9451830062 611394.4983567401 667207.3158894868 701375.0836540606 595470.5656410673 95808.19881991688 667046.7854383027 471094.7069802441 1.3408572345339937 1.1854061259161954 1.4216099974375034 1.2978165309388197 1.4162912594928962 1.488819707081688 1.2640145533752285 0.20337354124408516 1.4159504990283749 1.0 18.845657597025852 1.9703677811656637 24.69790084626088 0.7718688276932139 1.3552650725384565 0.34376015864676546 0.2912721389493999 500.3204784845026 417007.03400204465 0.11328160485249024 0.0732445890597419 93.40449595391392 -1.9703677811656637 0.5833962448452427 RHS(ph)DENDGGQPHK ddPTM_BT-474_Trastuzumab_2h_R1 3 RHSDENDGGQPHK 13 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 RHS(1)DENDGGQPHK;RHS(1)DENDGGQPHK;RHS(1)DENDGGQPHK 160.55 1.9766e-05 4703810000.0 1052335.0 1174960.0 1069836.0 1044880.0 1086090.0 1192356.0 1124434.0 493711.0 1252590.0 863009.0 True False 1046669.3452854096 1214067.8333216826 1220459.6096187877 1177161.7008660394 1224397.123740221 1109931.2362241147 1070040.8316649848 530554.2218336598 943905.9783460776 807931.0267608229 1.2954934401786034 1.5026874734457885 1.5105987630056548 1.4570076675796761 1.5154723400698007 1.3737945436680141 1.3244210164263885 0.6566825685117836 1.1683001977661496 1.0 19.623872609496214 1.9147627681946118 6.022479682876749 0.9166894340795797 1.444587582879336 0.7373022607974682 0.1336497428950425 0.10302423999062839 5.791560103768758 0.0561530610472497 0.03421297381999672 82.17936254944237 -1.9147627681946118 0.5278981487997563 RHS(ph)DENDGGQPHKR ddPTM_BT-474_Trastuzumab_2h_R1 5 RHSDENDGGQPHKR 14 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 RHS(1)DENDGGQPHKR;RHS(1)DENDGGQPHKR;RHS(1)DENDGGQPHKR;RHS(1)DENDGGQPHKR;RHS(1)DENDGGQPHKR 170.5 1.6513e-06 5787630000.0 349155.0 393852.0 346268.0 356986.0 348194.0 368373.0 381885.0 216768.0 428135.0 304601.3 True False 347275.18827476696 406961.12573143846 395019.5245845897 402180.3909974007 392534.44199247134 342908.2415667682 363411.76360763086 232944.32888560067 322626.86596507824 285161.3842517066 1.2178198292382874 1.4271256495662874 1.3852490077545472 1.4103606350935778 1.3765343544762307 1.2025058808947622 1.2744073485309433 0.8168859521315308 1.1313834333203459 1.0 18.12141910376248 1.8860185992020952 5.5079789457069 0.9727605292536138 1.3397976088707992 0.7149813564871857 0.10027612937460721 0.11354868329622805 4.644034515284624 0.04490671134590171 0.02681426991878572 76.91633799609924 -1.8860185992020952 0.36703707961718546 RHS(ph)DPWGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RHSDPWGR 8 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 RHS(1)DPWGR;RHS(1)DPWGR;RHS(1)DPWGR;RHS(1)DPWGR 111.52 0.0019703 1662180000.0 209384.0 385104.0 337251.0 380834.0 335386.0 275553.0 288871.0 233820.0 239875.0 292266.0 True False 208256.6998087492 397921.9538397163 384733.00936175865 429047.5453522098 378095.41911143437 256504.66969199092 274897.2061356165 251268.83571390194 180761.0204103219 273613.33365848864 0.7611350551676165 1.4543222310078787 1.4061193737070006 1.568079814003973 1.3818603576657393 0.9374713807337622 1.0046922876892044 0.9183354932092744 0.6606440482755834 1.0 18.061779011437885 2.717836793468234 7.4023189922162524 0.9083012148977132 1.341477080624063 0.4613005964998358 0.2205920981286437 0.17069770507964993 45.91008256086138 0.0708289680636812 0.06836467767206927 522.1999109991973 -2.717836793468234 0.4331758657263498 RHS(ph)DVSLANADLEDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSDVSLANADLEDSR 16 1 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;Q9UQ26-2;D6RDY0;Q9UQ26-5;Q9UQ26-4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 RHS(1)DVSLANADLEDSR 165.47 4.2966e-09 568010000.0 132540.0 153040.0 130250.0 114910.0 108280.0 135430.0 128110.0 104370.0 165340.0 144040.0 True False 131826.41936657848 158133.84388536646 148588.0678467049 129457.5942180124 122068.81617415791 126068.04286792853 121912.82987227465 112158.6193801213 124594.17244249156 134847.2438811516 0.9775981738474718 1.1726887352976871 1.1018991828832916 0.9600314436690348 0.905237753926539 0.9348952135724726 0.904080990930176 0.8317457305910749 0.9239652873610331 1.0 17.040966509324164 3.5966472967668714 3.1543682351584166 0.9040679988394761 1.093338710132723 0.6040059455397477 0.05987356787097537 0.15027505497488833 2.819836365841889 0.016438429294017797 0.026878222162597096 3950.4566163605523 -3.5966472967668714 0.1892707112932469 RHS(ph)EVETDSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSEVETDSKK 11 2 Q9NX58 Q9NX58 LYAR Cell growth-regulating nucleolar protein 1 RHS(1)EVETDSKK 198.87 2.7236e-08 106960000.0 321320.0 144920.0 153480.0 166260.0 110960.0 213230.0 214060.0 169640.0 408430.0 261170.0 True False 319590.0488220082 149743.57459401005 175088.64992792506 187308.49895297797 125090.09828855356 198489.9119894295 203705.10001138964 182299.39821446562 307777.8991816068 244501.90700111346 1.3071065691956045 0.6124433810380387 0.7161034123432326 0.7660819551486155 0.5116119535541451 0.8118133491225717 0.8331431951181549 0.7455949953536986 1.2587954955304506 1.0 17.89948619200827 1.248883138629352 24.990366794402703 1.1293977533738775 0.7718080167050244 0.30393496308148127 0.20550343300508805 196.22205496170383 475052.47426613653 0.1324814261500741 0.04720732728529637 17.737121404435698 -1.248883138629352 -0.3575897366688531 RHS(ph)HS(ph)HS(ph)PMSTR ddPTM_BT-474_Trastuzumab_2h_R1 4 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 RHS(1)HS(1)HS(0.997)PMS(0.001)T(0.001)R;RHS(0.999)HS(0.999)HS(0.996)PMS(0.004)T(0.002)R;RHS(1)HS(1)HS(0.904)PMS(0.077)T(0.02)R;RHS(0.999)HS(0.977)HS(0.844)PMS(0.16)T(0.02)R 65.949 0.027915 836760000.0 482380.0 637350.0 423570.0 532270.0 493236.0 681160.0 478460.0 190813.0 645340.0 367680.0 True False 479782.91967745614 658563.8094637888 483204.9742635603 599655.327425128 556046.6809611836 634073.0124781668 455315.06190530467 205052.4349887814 486304.60411296337 344214.3476133151 1.3938492773591082 1.9132375336184673 1.4037909157882782 1.7420985835801683 1.6154082036866098 1.8420876900531593 1.322766076028877 0.5957114699330721 1.412795856665656 1.0 18.39294770778 1.9952159085640349 7.048208482366061 0.956640251177507 1.6501897032627606 0.5924601786925581 0.24136684842583325 0.07824375889589391 23.381016099975543 0.0896430348548611 0.06119954057975415 98.90446738773072 -1.9952159085640349 0.6935494520852536 RHS(ph)HSHS(ph)PMSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 RHS(0.993)HS(0.016)HS(0.99)PMSTR 79.805 0.02248 2096400000.0 155720.0 232330.0 136070.0 140160.0 157160.0 174130.0 208050.0 98696.0 145540.0 162970.0 True False 154881.6208221185 240062.96360354946 155227.47325835782 157904.2416290714 177173.39443969965 162092.80295792955 197985.82667181888 106061.19668813309 109673.61713608445 152569.11507436357 1.0151571027113044 1.5734702497719844 1.017423960168469 1.034968588184492 1.161266448673729 1.0624221217965646 1.2976795898391282 0.6951681972884086 0.7188454693640225 1.0 17.219103418007077 1.723596095445357 8.83902752316664 0.7852856572839543 1.1666325442977168 0.4631968272521192 0.17764563309390302 0.08729203053617728 20.024783466441374 0.08296348259139058 0.04441140047870918 52.91710728497498 -1.723596095445357 0.3813468870137625 RHS(ph)LENK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSLENK 7 1 O14578-4 O14578-4 CIT Citron Rho-interacting kinase 1 RHS(1)LENK 70.942 0.034094 101850000.0 79675.0 79250.0 79600.0 86219.0 76310.0 91185.0 109860.0 61182.0 101960.0 94888.0 True False 79246.0386527247 81887.78834236326 90806.9881043969 97134.31655976678 86027.62617519387 84881.5955764015 104545.65209404496 65747.71151590107 76833.3241940029 88832.16660229614 0.8920871986328018 0.9218258596458303 1.022230928025679 1.0934588255022482 0.9684287737835072 0.9555276970381522 1.1768895895796225 0.7401340531325239 0.8649268292417952 1.0 16.438794558315845 1.7229139483382157 24.999999995871594 0.8513443163283931 1.0020320545169124 0.2836401659369012 0.09788028254621169 1.0361461172972655 1648.8670190971286 0.04432280200018789 0.024579199490441555 52.83405553326241 -1.7229139483382157 0.15068773818851922 RHS(ph)LSSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 RHSLSSTK 8 1 P42858;A0A3B3IU44 P42858 HTT Huntingtin 1 RHS(1)LSSTK;RHS(0.999)LSSTK 85.81299999999997 0.010092 191469000.0 145273.0 121424.0 118120.0 135695.0 126882.0 132233.0 149382.0 107905.0 185214.0 152062.0 True False 144490.86630934753 125465.52443764191 134750.269282555 152873.97308687834 143039.6706114656 123092.04395299993 142155.82196534338 115957.41903048748 139570.4914404476 142357.27297317196 1.0149875962893562 0.8813425673115177 0.9465639968247317 1.073875397400232 1.0047935565499506 0.8646698646453934 0.9985848913538365 0.8145521237424962 0.9804240312101965 1.0 17.119156676082426 2.7556877517616107 24.811959791463963 0.9171639063649734 0.9814706290219537 0.10065418109805169 0.07226889604378584 1425.3913467399136 2064951.5386913505 0.022135355890631186 0.023423250080706556 569.7544839653953 -2.7556877517616107 0.06430672265698034 RHS(ph)PESPSIAVVESELVAEYITTER ddPTM_BT-474_Trastuzumab_2h_R1 4 RHSPESPSIAVVESELVAEYITTER 25 1 Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-7 EMSY Protein EMSY 1 RHS(0.471)PES(0.471)PS(0.058)IAVVESELVAEYITTER;RHS(0.459)PES(0.459)PS(0.082)IAVVESELVAEYITTER;RHS(0.333)PES(0.333)PS(0.333)IAVVES(0.001)ELVAEYITTER;RHS(0.333)PES(0.333)PS(0.333)IAVVESELVAEYITTER 157.9 1.3942000000000002e-09 167462000.0 83094.0 100567.0 87022.0 89810.0 93354.0 94621.0 89804.0 74707.0 96928.0 94835.0 True False 82646.63113661123 103914.31180096463 99273.94119121654 101179.93679157336 105242.07854749127 88080.07298387565 85459.83743540506 80282.0156944593 73041.39316865732 88782.54910767156 0.9308882428728313 1.1704362269993165 1.118169529811782 1.1396376631275456 1.1853914942209907 0.9920876779180561 0.962574720982196 0.904254456549753 0.8226998875654713 1.0 16.437988511192867 2.4121624218899402 2.4058864528608823 0.9100823242498922 1.1138766724294253 0.552631022231828 0.07874617775834694 0.20226788076570912 2.393314277390678 0.030462031434295208 0.02437750299481762 258.3226111309165 -2.4121624218899402 0.20379434817953312 RHS(ph)PESPSIAVVESELVAEYITTVSHR ddPTM_BT-474_Trastuzumab_2h_R1 5 RHSPESPSIAVVESELVAEYITTVSHR 27 1 Q7Z589-4;E9PMC9 Q7Z589-4 EMSY;C11orf30 Protein EMSY 1 RHS(0.859)PES(0.135)PS(0.005)IAVVESELVAEYITTVSHR;RHS(0.985)PES(0.014)PS(0.001)IAVVESELVAEYITTVSHR;RHS(0.781)PES(0.11)PS(0.11)IAVVESELVAEYITTVSHR;RHS(1)PESPSIAVVESELVAEYITTVSHR;RHS(0.996)PES(0.004)PSIAVVESELVAEYITTVSHR 235.29 2.5052999999999998e-45 158634200.0 50125.4 56552.7 55140.8 59992.9 53823.1 56422.3 58236.6 44428.7 66391.1 67277.6 True False 49855.53041585548 58435.02243267096 62904.145347574486 67587.99498878939 60677.152750492474 52521.95920480785 55419.473172583814 47744.19519836732 50029.90300016145 62983.88596874873 0.7915600895218301 0.9277773439013461 0.9987339520268119 1.073099792895045 0.9633758193420964 0.8338951844106306 0.8798992364504437 0.7580382579451668 0.7943286164493761 1.0 15.942695150914357 2.7373134156075043 22.973491536053707 0.8340793401631151 0.9590695708031383 0.21195373597826084 0.08979134573040783 45.99677967339204 847251.8475159896 0.029009484601782657 0.028786441102042697 546.1518581916447 -2.7373134156075043 0.12499023064002313 RHS(ph)PPIEK ddPTM_BT-474_Trastuzumab_2h_R1 7 RHSPPIEK 8 1 Q8IZD4;Q8IZD4-2;F5GZK9 Q8IZD4 DCP1B mRNA-decapping enzyme 1B 1 RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK 155.47 0.00025016 7993130000.0 5759660.0 5964080.0 5451850.0 5350520.0 5260160.0 6443610.0 6331380.0 4621910.0 8195370.0 6273430.0 True False 5728650.63051839 6162590.7974375095 6219423.091670303 6027895.283398829 5930010.196589011 5998178.407326394 6025106.961179629 4966820.3937834315 6175730.87583175 5873054.326446357 0.9754125046523549 1.0492991303838908 1.058975917124459 1.0263646389673637 1.0096978279063726 1.0213047715762824 1.0258898736980142 0.845696313657077 1.051536480434455 1.0 22.485679552320804 RHS(ph)PS(ph)PRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSPSPRPR 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RHS(1)PS(1)PRPR 51.774 0.081788 195520000.0 214870.0 272500.0 214730.0 301170.0 260680.0 287150.0 274580.0 159730.0 323830.0 249560.0 True False 213713.1637943011 281569.99777027144 244962.11753338116 339298.09112034383 293876.0528285879 267299.9963783927 261297.51640253843 171649.8636925052 244026.43559968588 233632.8671409346 0.9147392933605643 1.2051814507777268 1.0484916806915372 1.4522703730535853 1.2578540700410645 1.1441027097319703 1.118410776703415 0.7346991277086056 1.0444867564480196 1.0 17.833883719227437 1.9250435118236229 7.216220689680233 0.9020591637662818 1.1791577307274492 0.3406561489457903 0.1508713145729838 0.26976113606360325 22.59779378712033 0.06467759686883887 0.04024841031940595 84.14794449752884 -1.9250435118236229 0.2770985669611674 RHS(ph)SDINHLVTQGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RHSSDINHLVTQGR 14 1 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 1 RHS(0.96)S(0.04)DINHLVTQGR;RHS(0.786)S(0.214)DINHLVTQGR;RHS(0.814)S(0.186)DINHLVTQGR;RHS(0.808)S(0.192)DINHLVTQGR 154.6 2.8557e-06 6761200000.0 1314860.0 2272210.0 2341420.0 2541540.0 2416190.0 2636140.0 2574160.0 656140.0 2029870.0 2194090.0 True False 1307780.939854678 2347839.136270051 2671071.584012523 2863298.7034100355 2723877.4746198603 2453909.846606077 2449638.0465538576 705104.4986114094 1529635.737364461 2054061.2977450434 0.6366805807063134 1.1430229170120279 1.3003855274157765 1.3939694528850606 1.3260935677090766 1.1946624228303162 1.192582738033709 0.34327334796944764 0.7446884564952863 1.0 20.970047804842622 1.7589439523606023 24.999999999999996 0.6375046004703183 1.189243653982711 0.42893601418719396 0.2469735295509139 7.473824713569949 9174.706032634547 0.11370314531807746 0.06305549554815845 57.40423746986735 -1.7589439523606023 0.5517390535123926 RHS(ph)SDINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSSDINHLVTQGRESPEGSYTDDANQEVR 30 2 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 2 RHS(0.916)S(0.084)DINHLVT(0.004)QGRES(0.996)PEGSYTDDANQEVR 186.02 2.4097e-18 712700000.0 43477.0 47483.0 63659.0 61794.0 72012.0 65113.0 83426.0 32146.0 56969.0 56575.0 True False 43242.924662748825 49063.44295092039 72621.6338660529 69617.11406411848 81182.30135143586 60611.89156951511 79390.3656617312 34544.897754080484 42929.75329548988 52964.33506370566 0.8164536496254717 0.926348700345369 1.3711421804635777 1.3144149545233186 1.5327729736206364 1.1443906828361188 1.498940099337417 0.6522294240554475 0.8105407769936853 1.0 15.69273358928814 1.7125188012717085 10.13377307184389 0.8036504746981925 1.2344877466707207 0.39912866212036235 0.22894032574277853 0.10814006744139275 26.54535343396966 0.11357946504557091 0.061447652128303186 51.58444962853628 -1.7125188012717085 0.4308372719725282 RHS(ph)VTLPSSK ddPTM_BT-474_Trastuzumab_2h_R1 6 RHSVTLPSSK 10 1 Q07352;G3V2D5;G3V515;G3V2P5 Q07352 ZFP36L1 Zinc finger protein 36, C3H1 type-like 1 1 RHS(0.998)VT(0.002)LPSSK;RHS(0.987)VT(0.013)LPSSK;RHS(0.957)VT(0.043)LPSSK;RHS(0.966)VT(0.034)LPSSK;RHS(0.997)VT(0.003)LPSSK;RHS(0.973)VT(0.027)LPSSK 126.77 0.00022894 4642540000.0 7962090.0 5237770.0 5079770.0 5614370.0 4564500.0 6134960.0 5566190.0 4666720.0 8879410.0 6774060.0 True False 7919222.992111355 5412106.008151175 5794957.461847636 6325148.66634568 5145762.019088886 5710864.65534244 5296932.124789287 5014974.343524001 6691198.383498143 6341733.691235454 1.2487473264694255 0.8534111130574493 0.9137812692854816 0.9973847806140622 0.8114125047856469 0.9005210457252563 0.8352498516470146 0.7907891733856482 1.0551055451517406 1.0 22.596445864867352 4.742377883793465 24.665782590323396 0.891938618625302 1.2487474934224256 0.5920399535295127 0.08448906362714133 203.63879608502458 1315774.451740533 0.019666801890652588 0.14772185232583904 55255.801620191596 -4.742377883793465 0.35680887479712364 RHS(ph)WGPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RHSWGPGK 8 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;H0YMW2;A0A087WY36;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 RHS(1)WGPGK;RHS(1)WGPGK 139.31 0.00040923 413950000.0 672200.0 599950.0 498770.0 520030.0 501450.0 658200.0 666590.0 461760.0 838980.0 642750.0 True False 668580.9498884405 619918.973072566 568992.4806134431 585865.7446801226 565306.6851729908 612700.1832361408 634344.4950789135 496218.8759697691 632224.6207560278 601729.144714039 1.1110994967780257 1.0302292626480163 0.94559568139889 0.9736369757501853 0.9394703416628467 1.018232519761554 1.054202710058816 0.8246548805702076 1.0506797390651257 1.0 19.198754709742264 4.556732043191246 2.722164337164695 0.9665359102549879 1.1154260390854664 0.2935836563424459 0.06339281348378463 0.37868674757739673 4.6628036865277265 0.015958218357769578 0.10344166513606659 36035.62370140889 -4.556732043191246 0.14889012883047859 RHS(ph)YAGEQPETVPYLLLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSYAGEQPETVPYLLLNR 19 1 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 RHS(0.964)Y(0.036)AGEQPETVPYLLLNR 66.77 0.016358 616290000.0 57397.0 65226.0 60771.0 74258.0 60256.0 64672.0 60894.0 60987.0 84817.0 71966.0 True False 57087.98092940622 67397.00798005036 69327.02856899869 83659.05518615579 67929.24443470692 60201.3768615128 57948.32458232997 65538.15962571107 63914.98683957173 67373.06826680766 0.847341265553308 1.0003553306069999 1.0290020976104732 1.241728443401941 1.0082551705333758 0.8935525486698355 0.860111110760842 0.9727649535890205 0.9486726444824896 1.0 16.039884382786024 2.9095047304382393 6.477486213005369 0.9314774637629801 1.0389293589950965 0.1792280757330017 0.0963027864914678 0.39741772206330517 23.793307765694816 0.030911502079787625 0.032951117740993845 811.9040923389609 -2.9095047304382393 0.1074518952321164 RHSS(ph)DINHLVT(ph)QGRESPEGSYTDDANQEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSSDINHLVTQGRESPEGSYTDDANQEVR 30 2 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 2 RHS(0.473)S(0.528)DINHLVT(0.742)QGRES(0.176)PEGS(0.034)Y(0.04)T(0.007)DDANQEVR 149.68 5.059300000000001e-07 544710000.0 44276.0 39602.0 35857.0 67690.0 53618.0 79808.0 62834.0 38001.0 64288.0 47217.0 True False 44037.62293552603 40920.12863008544 40905.35392536884 76259.54705958799 60445.93448121539 74291.06080782424 59794.47937081025 40836.827585168074 48445.08381506526 44203.570635492535 0.9962458304254439 0.9257199823859771 0.9253857400497995 1.7251897519418178 1.367444611650474 1.680657461371988 1.352706998805188 0.9238354955963402 1.0959540851246772 1.0 15.431875290570167 RHSSVS(ph)DSQPCEPPSVGTEYSQGASPQPQHQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RHSSVSDSQPCEPPSVGTEYSQGASPQPQHQLK 33 1 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 RHS(0.291)S(0.291)VS(0.343)DS(0.076)QPCEPPSVGTEYSQGASPQPQHQLK 69.163 0.0019566 101770000.0 11089.0 14271.0 16682.0 19013.0 18241.0 13434.0 12981.0 12109.0 16575.0 16115.0 True False 11029.298056103717 14746.001607998332 19030.68059745665 21420.043850553197 20563.883227122416 12505.33920023446 12353.059437764397 13012.635068256093 12490.313343621008 15086.526903254367 0.7310693923678715 0.9774285163550414 1.2614354993362638 1.4198127897768573 1.3630627750835422 0.8289077585866956 0.8188139998676353 0.8625335142874463 0.8279117800748879 1.0 13.88097309819343 2.7157976347869273 24.64508605259456 0.8555030728481668 1.162061323116131 0.3554844495955761 0.18981555462345076 766.6328487552305 830018.9177953395 0.06722854863751822 0.06342640277753903 519.7537540174662 -2.7157976347869273 0.3065582502679641 RHT(ph)LEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHTLEDR 7 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 RHT(1)LEDR 112.13 0.0037642 47872000.0 34222.0 40032.0 30806.0 48423.0 38736.0 35142.0 28637.0 18831.0 31744.0 31130.0 True False 34037.75255442165 41364.440920145 35143.21702944791 54553.346835077944 43668.79999374017 32712.716255369913 27251.71890603645 20236.26484188047 23921.116547807243 29143.25674826614 1.1679460826369965 1.4193486087516953 1.2058781670493546 1.8719029004307681 1.4984186692291424 1.1224797742385513 0.9350951796990834 0.6943721155352487 0.8208113717157028 1.0 14.830874486603065 2.417419921788006 2.4420197523655536 0.8149892877213506 1.4405921692356258 0.6531989820929485 0.195169256758128 0.17193932472225773 2.0951524820593157 0.07968605463692534 0.06417712706355241 261.4688289426628 -2.417419921788006 0.6256028815142752 RHT(ph)MDKDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RHTMDKDSR 9 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 RHT(1)MDKDSR 137.59 0.0076477 233830000.0 435410.0 416080.0 376390.0 311260.0 300380.0 388590.0 411770.0 203290.0 659900.0 377560.0 True False 433065.8009385984 429928.9712743286 429382.4403594715 350665.48408579355 338631.6125082527 361727.68794246705 391851.1119858444 218460.5320857032 497276.48720696894 353463.7975546217 1.2252055342999464 1.216330991317125 1.214784776630817 0.9920831680975879 0.9580376119167425 1.0233797363266552 1.1086032422465857 0.6180563146695212 1.4068668153493809 1.0 18.43120293342332 3.733560144823857 5.4941534126919835 0.9804213270907601 1.2201426597227598 0.1912229402039195 0.1823127640022995 0.22713746469133148 25.574509614864024 0.047563438178848456 0.08005496498799104 5414.522276379936 -3.733560144823857 0.23972133263199968 RHT(ph)PLSK ddPTM_BT-474_Trastuzumab_2h_R1 3 RHTPLSK 7 1 P61956;P61956-2;A8MUA9;A8MU27;P55854;P55854-2 P61956;A8MUA9 SUMO2;SUMO3 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3 1 RHT(1)PLSK;RHT(1)PLSK;RHT(1)PLSK 71.34899999999998 0.03197 564370000.0 648360.0 610320.0 525120.0 537930.0 485770.0 631560.0 697480.0 394207.0 877450.0 664950.0 True False 644869.3017995679 630634.1322537698 599052.3315751364 606031.8828447938 547629.9301156324 587901.743732327 663740.227767654 423624.72808258585 661214.2047276177 622512.3217076635 1.035914116576159 1.0130468269669373 0.9623140148163299 0.9735259234425099 0.8797093824799882 0.944401778457343 1.0662282570518362 0.680508181622023 1.0621704690339109 1.0 19.247742867907668 4.2015047764832865 0.7766532980991266 0.9127456057395527 1.066145442806976 0.05065266525135015 0.10532943472603808 2.9531926151793044 2.231287585758686 0.042434651226153204 0.3456357583269303 15903.941752936678 -4.2015047764832865 0.15339983706742344 RHT(ph)VEDAVVSQGPEAAGPLSTPQEVSASR ddPTM_BT-474_Trastuzumab_2h_R1 3 RHTVEDAVVSQGPEAAGPLSTPQEVSASR 29 1 Q96NW4 Q96NW4 ANKRD27 Ankyrin repeat domain-containing protein 27 1 RHT(0.996)VEDAVVS(0.004)QGPEAAGPLSTPQEVSASR;RHT(0.997)VEDAVVS(0.003)QGPEAAGPLSTPQEVSASR;RHT(0.988)VEDAVVS(0.012)QGPEAAGPLSTPQEVSASR 145.65 4.5968e-08 365230000.0 151841.0 155306.0 144218.0 150826.0 162411.0 156944.0 131390.0 97100.0 162962.0 132910.0 True False 151023.5049271209 160475.26632554043 164522.6408346725 169920.5561354617 183093.07816458435 146094.83068643726 125034.16374145774 104346.09506380933 122802.19867892393 124427.57001002422 1.2137463177570216 1.2897082721507147 1.3222362280434963 1.3656182156556818 1.4714831941975068 1.1741355286024429 1.004875074964372 0.8386091205944384 0.9869372090850175 1.0 16.92494666014514 2.3257174957053395 2.7954041951643562 0.9263004786555135 1.3310634499452023 0.8414201324983237 0.07639065173072561 0.09464352169490273 1.5092200342583086 0.031134012812811415 0.024031479109479944 211.6983610219254 -2.3257174957053395 0.40476297128968886 RHVTLPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;A0A0A0MSW0;X6RE05 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 RHVT(0.005)LPS(0.498)S(0.498)PR;RHVTLPS(0.502)S(0.498)PR;RHVTLPS(0.79)S(0.21)PR 79.639 0.016172 1016740000.0 439750.0 558120.0 551430.0 587990.0 491970.0 507960.0 551600.0 302202.0 617750.0 543410.0 True False 437382.4348608185 576696.6868093348 629066.5508845175 662429.4737120274 554619.4633653541 472845.9208092229 524917.0006833717 324753.8477906622 465513.78992590494 508729.1085632932 0.859755078878884 1.133602691691831 1.2365452267142143 1.302126146433415 1.0902058758376543 0.9294650391533358 1.0318202592452295 0.6383630154519813 0.9150523964326849 1.0 18.956538119410805 2.451487052906669 1.677074072024487 0.8331072761247328 1.1415349077949823 0.3452121268567928 0.1481058548497813 0.3469395309500729 1.9812164296293593 0.06971284577039892 0.05314467605484951 282.8049800580674 -2.451487052906669 0.30842763167024956 RIACDEEFS(ph)DS(ph)EDEGEGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RIACDEEFSDSEDEGEGGR 19 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 2 RIACDEEFS(1)DS(1)EDEGEGGR;RIACDEEFS(1)DS(1)EDEGEGGR 201.17 2.1422e-15 1498790000.0 899520.0 1095590.0 883010.0 880910.0 871500.0 1027620.0 958570.0 848840.0 1027820.0 1044440.0 True False 894677.0842660666 1132056.0508518596 1007330.1327394919 992433.1156782627 982480.3592148012 956583.0481572831 912200.3070069968 912184.7511221824 774527.5330823861 977782.9450099296 0.9150058188599116 1.1577784789858074 1.0302185550283476 1.0149830499121504 1.0048041482302843 0.9783184018898681 0.9329272019545537 0.9329112926109782 0.7921262454363229 1.0 19.899154715777765 2.4672904370520676 1.1013424010143522 0.900342635389821 1.0401825283659378 0.3403556286449997 0.07271457932076905 0.5063425872443124 1.2355552532737941 0.04134139884207309 0.029060784568128502 293.28539533158323 -2.4672904370520676 0.13983989297611688 RIDFIPVS(ph)PAPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 5 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 2 RIDFIPVS(1)PAPS(0.996)PT(0.004)R;RIDFIPVS(1)PAPS(0.975)PT(0.025)R;RIDFIPVS(1)PAPS(0.989)PT(0.011)R;RIDFIPVS(1)PAPS(0.969)PT(0.031)R;RIDFIPVS(1)PAPS(0.959)PT(0.041)R 120.9 0.00041413 774390000.0 660121.0 616000.0 531709.0 659752.0 509446.0 646936.0 480940.0 536744.0 817128.0 639149.0 True False 656566.9818823381 636503.187620136 606569.0055025226 743276.535554104 574320.9283769863 602214.8370435378 457675.0948307846 576798.5628108063 615757.7533542293 598357.9636170106 1.0972812627301893 1.0637498392643452 1.013722624891423 1.2421937715361486 0.9598283357094088 1.0064457626722518 0.764885106674585 0.9639690584614601 1.0290792314888546 1.0 19.19064929971 3.034483613201087 24.77385774789698 0.9408330564681474 1.0956462235918956 0.4106743046078243 0.08734632789797198 158.6882929348771 114004.4282378009 0.025208015317286732 0.030129221022487294 1082.6388642281784 -3.034483613201087 0.15481316712374815 RIDFIPVSPAPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 RIDFIPVS(0.002)PAPS(0.961)PT(0.038)R;RIDFIPVSPAPS(0.843)PT(0.157)R 138.04 9.7631e-06 48452000.0 363877.0 518780.0 444383.0 451466.0 511683.0 423109.0 481545.0 419916.0 465326.0 474336.0 True False 361917.9266625353 536047.2786908674 506948.26375372184 508621.54931014817 576842.7970672486 393860.47072145285 458250.8286694602 451252.26421024295 350652.6423489461 444063.4703805192 0.8150139581452327 1.2071411283425924 1.141612173861805 1.1453802963668887 1.2990097937417604 0.8869463421162581 1.0319489425166717 1.016188662903444 0.7896453226573014 1.0 18.76040637141519 2.715648482678483 24.992525579041608 0.9590323816182467 1.1288114511773835 0.30120804530476264 0.1334768448493203 1037.3022012530664 1131486.5347669923 0.04223299436950217 0.03983954538173153 519.575282816303 -2.715648482678483 0.1697790695591368 RIDFTPVS(ph)PAPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 4 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309;Q7Z309-2;Q7Z309-3;Q7Z309-5 G1UD79 SPACIA2;FAM122B Protein FAM122B 2 RIDFT(0.052)PVS(0.948)PAPS(0.996)PT(0.004)R;RIDFT(0.01)PVS(0.99)PAPS(0.94)PT(0.06)R;RIDFT(0.001)PVS(0.999)PAPS(0.991)PT(0.009)R;RIDFTPVS(1)PAPS(0.956)PT(0.044)R 113.01 0.0025151 1363790000.0 1336050.0 1359630.0 1161550.0 1301360.0 1168890.0 1295990.0 1237150.0 1180770.0 1558500.0 1342420.0 True False 1328856.855249109 1404884.462636308 1325086.1436264096 1466112.0425685518 1317741.2129461733 1206401.2617323091 1177304.3281280508 1268885.05322857 1174428.5578300653 1256745.606296416 1.0573793523457802 1.11787497453558 1.0543789745415468 1.1665941263078143 1.0485345692431018 0.9599407037415713 0.9367880995403074 1.0096594305731679 0.9344998319039793 1.0 20.261261214565568 2.908597020280416 4.068379504867401 0.9701772691217231 1.098372946473126 0.7338067169877228 0.037232675372893015 0.11392847020580472 3.3898886773536034 0.011017087415127262 0.01193642826030555 810.2089200723908 -2.908597020280416 0.12819567735140291 RIDFTPVSPAPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 4 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309;Q7Z309-2;Q7Z309-3;Q7Z309-5 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 RIDFTPVSPAPS(0.999)PT(0.001)R;RIDFTPVSPAPS(0.953)PT(0.047)R;RIDFTPVSPAPS(0.943)PT(0.057)R;RIDFTPVSPAPS(0.977)PT(0.023)R 148.64 2.1421e-06 1810760000.0 640363.0 866620.0 860110.0 793419.0 926401.0 832621.0 907970.0 787694.0 842370.0 893912.0 True False 636915.3567590185 895464.9228171472 981206.0117898602 893865.7640489177 1044372.676141079 775063.8700490103 864048.022317768 846475.7261090855 634779.2006796991 836861.770843433 0.7610759374479514 1.0700272781186442 1.1724827755018006 1.0681163785842829 1.2479631792577952 0.9261551872155188 1.0324859521865066 1.0114881042492394 0.758523358092861 1.0 19.67462981885204 1.409815335212525 6.610122156745351 0.8777063601664651 1.0476529843180944 0.17756627621917442 0.1352993645721945 0.32764829469362794 22.970922606066477 0.08821145880902159 0.032939644230361616 25.69303066396775 -1.409815335212525 0.1699466241516293 RIDIS(ph)PSTFR ddPTM_BT-474_Trastuzumab_2h_R1 10 RIDISPSTFR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 RIDIS(0.996)PS(0.004)TFR;RIDIS(0.988)PS(0.011)T(0.001)FR;RIDIS(0.977)PS(0.021)T(0.002)FR;RIDIS(0.988)PS(0.011)T(0.001)FR;RIDIS(0.99)PS(0.005)T(0.005)FR;RIDIS(0.879)PS(0.084)T(0.037)FR;RIDIS(0.882)PS(0.104)T(0.014)FR;RIDIS(0.989)PS(0.006)T(0.006)FR;RIDIS(0.967)PS(0.031)T(0.002)FR;RIDIS(0.998)PS(0.002)TFR 159.0 4.7875e-06 65778938000.0 609145.0 986360.0 877959.0 1067095.0 941948.4 775836.0 797127.0 704364.0 861795.0 844030.0 True False 605865.4310023721 1019190.3963327896 1001567.9958435709 1202189.1175882842 1061899.9453744192 722204.2834414995 758566.9216891472 756927.2183679189 649417.1697113641 790163.2827895626 0.7667597877535484 1.289847830861842 1.2675456043815059 1.5214439139010878 1.343899379411212 0.9139937265774445 0.9600128710247473 0.9579377261060418 0.8218771788771129 1.0 19.591791283333848 2.7312376172932393 24.64104595048565 0.9331293227123465 1.2581848291228908 0.40897384365111944 0.18379177650309836 464.4649249236085 1562867.4540361937 0.06024019616749547 0.05786758406812707 538.5643688172736 -2.7312376172932393 0.32505550641054426 RIDIS(ph)PSTFRK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIDISPSTFRK 11 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 RIDIS(0.471)PS(0.189)T(0.34)FRK 67.92699999999999 0.030595 636670000.0 191950.0 289860.0 229430.0 308790.0 252630.0 261560.0 289020.0 242220.0 420830.0 310040.0 True False 190916.5625276497 299507.81487592997 261731.74975869106 347882.78233904793 284800.93304467644 243478.97284601213 275038.9984363812 260295.686368238 317122.0853330937 290252.98176140175 0.6577591774219562 1.0318854023767998 0.9017366442555407 1.198550244782739 0.9812162180603985 0.8388508926539142 0.9475837139288135 0.8967890175964163 1.0925713266014931 1.0 18.146951362372757 4.7445177605162305 24.78085892480607 0.9779780161870819 0.6577590187738714 0.4980742247144351 0.09892915312910784 517.102345703416 2151002.562031222 0.02377047576431988 0.21537461693293664 55528.73251858817 -4.7445177605162305 -0.32021899741321047 RIDIS(ph)PSTLR ddPTM_BT-474_Trastuzumab_2h_R1 10 RIDISPSTLR 10 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 RIDIS(0.761)PS(0.229)T(0.009)LR;RIDIS(0.428)PS(0.428)T(0.144)LR;RIDIS(0.948)PS(0.051)T(0.001)LR;RIDIS(0.983)PS(0.013)T(0.004)LR;RIDIS(0.821)PS(0.164)T(0.015)LR;RIDIS(0.998)PS(0.002)T(0.001)LR;RIDIS(0.999)PS(0.001)TLR;RIDIS(0.814)PS(0.185)T(0.001)LR;RIDIS(0.997)PS(0.002)T(0.001)LR;RIDIS(1)PSTLR 129.17 0.00019001 93100930000.0 1659318.0 2135550.0 1860213.0 2226704.0 2027783.0 1876201.0 1843730.0 1633996.0 2010040.0 1725432.0 True False 1650384.4162555614 2206630.4907827624 2122114.821138749 2508604.498090895 2286009.1454385156 1746503.6409720914 1754541.7361674255 1755933.0787835647 1514692.575156076 1615313.4525433446 1.0217115530468694 1.3660695311540785 1.313748002158612 1.553014056894682 1.415210863154236 1.0812165516371979 1.086192734546266 1.0870540798250714 0.9377081412719996 1.0 20.62338271724682 2.67710507413373 5.939769343537503 1.0489114378138666 1.3465280952263599 0.5573238601317518 0.1313851964777802 0.1759758092093057 12.794028658776217 0.04394633300868773 0.04158296463884577 475.45024347496104 -2.67710507413373 0.2976166574124932 RIDIS(ph)PSTLRK ddPTM_BT-474_Trastuzumab_2h_R1 5 RIDISPSTLRK 11 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 RIDIS(0.466)PS(0.466)T(0.068)LRK;RIDIS(0.994)PS(0.005)T(0.001)LRK;RIDIS(0.922)PS(0.033)T(0.045)LRK;RIDIS(0.998)PS(0.002)TLRK;RIDIS(0.944)PS(0.043)T(0.013)LRK 128.09 0.00021498 4672922000.0 3333265.0 4953479.0 4057226.0 4783460.0 4522978.0 4423027.0 5143992.0 4369140.0 7286380.0 5733741.0 True False 3315319.071600555 5118352.55407371 4628448.15475942 5389045.5455407975 5098952.438509057 4117273.55417563 4895157.455002283 4695187.412843375 5490749.281489779 5367808.740477363 0.6176298806253148 0.953527370578135 0.862260258987508 1.003956326704283 0.9499132113368861 0.7670305991210631 0.9119470703359959 0.8746934996841613 1.0229033013202113 1.0 22.355901837345026 4.742870075162171 24.748765748061253 0.9169561692548807 0.6176297431261221 0.6064608533604818 0.07442732609275132 259.7447806012473 1491623.4813244955 0.017249946077994096 0.13533647772033153 55318.45920994258 -4.742870075162171 -0.2993264261287586 RIDISPS(ph)TFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RIDISPSTFR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 RIDIS(0.095)PS(0.453)T(0.453)FR 155.8 1.2779e-05 1465100000.0 210360.0 291820.0 285340.0 309890.0 294490.0 281380.0 287690.0 262440.0 326600.0 267640.0 True False 209227.44513319313 301533.0522910849 325513.3917802587 349122.0422262625 331991.55592101783 261928.86289727356 273773.3356174746 282024.60544331715 246113.80621578413 250558.98606186814 0.8350426716746475 1.203441381330583 1.2991487429625963 1.3933726653094658 1.3250035895301808 1.0453780445639174 1.0926502374569569 1.125581683882132 0.9822589486174469 1.0 17.934790754029958 2.7191775370877163 24.11098992380456 1.066140887792576 1.2257772225582977 0.22898563734104116 0.14579702490383387 844.3634498511063 1050317.8803795436 0.049362084695332285 0.046610552445708706 523.814525190491 -2.7191775370877163 0.1596363347657217 RIDS(ph)FVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIDSFVK 7 1 Q96CC6 Q96CC6 RHBDF1 Inactive rhomboid protein 1 1 RIDS(1)FVK 70.55199999999998 0.032652999999999995 0.0 53313.0 56648.0 58855.0 48112.0 61793.0 85792.0 58727.0 44411.0 70217.0 58768.0 True False 53025.96873163112 58533.49443556085 67141.2724231694 54202.97426696553 69661.97227419422 79861.40097264519 55886.15065107387 47725.17433448855 52912.961209595 55017.37592618388 0.9638040317076444 1.0639092368580885 1.2203648627890213 0.9851973736386297 1.2661812945724422 1.4515668846110406 1.0157909153292883 0.8674563904778159 0.9617499984111866 1.0 15.74759971097818 2.0094670568141852 24.934470992220888 0.9316621603746869 1.160670073352909 0.34028016238251324 0.13708549371746961 213.12951422924422 561340.9842139493 0.0538115556504206 0.039691700906256636 102.20380314874635 -2.0094670568141852 0.2290079129782221 RIDT(ph)PSLEEPSDLEELEQFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RIDTPSLEEPSDLEELEQFAK 21 1 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 POU domain protein;POU domain, class 2, transcription factor 1 1 RIDT(0.995)PS(0.005)LEEPSDLEELEQFAK;RIDT(0.972)PS(0.028)LEEPSDLEELEQFAK 214.05 4.1912999999999996e-24 164593000.0 237490.0 162002.0 140695.0 162853.0 144374.0 187089.0 167344.0 167351.0 292560.0 224460.0 True False 236211.38022761946 167394.1386377228 160503.6330571371 183470.17310230565 162759.17312825896 174155.97779013414 159248.93140384005 179839.58141115902 220462.50810315323 210134.77063012603 1.1240946917984973 0.7966037135870567 0.7638128262916164 0.8731071614285351 0.7745466047346519 0.8287822965609015 0.7578418884523687 0.8558297176230208 1.049148160687818 1.0 17.68095537640587 1.273741745159599 6.775563344413235 1.0248481982060171 0.8362874484679161 0.3267911671206819 0.10125336971718323 0.17163049501143904 23.07068293505903 0.069112368040966 0.02395292294903025 18.781996062284456 -1.273741745159599 -0.188560749738101 RIDTPSLEEPSDLEELEQFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIDTPSLEEPSDLEELEQFAK 21 1 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 POU domain protein;POU domain, class 2, transcription factor 1 0 149.85 1.2317e-07 90021000.0 42163.0 43205.0 35292.0 39448.0 37626.0 47095.0 50900.0 51743.0 60202.0 46606.0 False True 41935.9990927497 44643.05230702598 40260.8068364369 44442.11275530544 42417.44807322559 43839.43349970537 48437.77254311749 55604.32540563015 45366.02376547041 43631.56517859591 0.9611390038632398 1.0231824626114092 0.9227449593347941 1.01857709145642 0.9721734230619368 1.0047641729160663 1.1101543651906243 1.274405930156905 1.0397523806394495 1.0 15.41308460744439 2.2178985990046263 3.960393942764991 1.147397447511954 0.9822620897887878 0.34904924011055327 0.07546416636781025 0.1721183829761326 5.943731001992718 0.028311351694676887 0.021232627624101535 165.15761359109183 -2.2178985990046263 -0.16513535772316612 RIEELNK ddPTM_BT-474_Trastuzumab_2h_R1 4 RIEELNK 7 1 Q9BTC8;E7EV10;E7EQY4;Q9BTC8-2;E9PCS8;H7C3F3;H0YIT0;E9PF88;E7ESY4;Q13330-3;Q13330;Q13330-2;O94776 Q9BTC8;E7ESY4;O94776 MTA3;MTA1;MTA2 Metastasis-associated protein MTA3;Metastasis-associated protein MTA1;Metastasis-associated protein MTA2 0 ;;; 143.89 0.0038344 1273360000.0 1510950.0 1688360.0 1536760.0 1533880.0 1621430.0 2077890.0 2156850.0 1840280.0 2632020.0 1984800.0 False True 1502815.2130823268 1744556.0419648266 1753122.4502426267 1728069.0507277423 1827909.499531446 1934250.3551269283 2052514.9255328684 1977611.0383524913 1983393.9382610752 1858128.36472723 0.8087790066661715 0.9388781071758325 0.9434883420984653 0.9300052049856199 0.9837369334813313 1.0409670245849096 1.1046141722475529 1.0643027015212703 1.067414919179835 1.0 20.82541873991368 3.6521967436557325 0.6453605890852359 1.0712675116047352 0.8345235454252918 0.7716045183467084 0.039574861155924256 0.5263693457456156 0.38685330551736075 0.022709314648627178 0.07766609097619016 4489.487261790119 -3.6521967436557325 -0.23674396617944338 RIEFAEQINK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIEFAEQINK 10 1 Q9H307 Q9H307 PNN Pinin 0 136.48 0.0001871 381420000.0 320860.0 328290.0 308520.0 286370.0 278560.0 348160.0 350740.0 307100.0 485210.0 366620.0 False True 319132.52541089756 339216.9341945041 351956.9342960875 322624.41263782274 314032.9648455251 324092.51868048427 333773.36624308507 330017.3614222025 365636.49698089546 343221.9977208267 0.9298137285200371 0.9883309824168663 1.0254498156681835 0.939987573000033 0.914955821395097 0.9442649970940902 0.972470787011073 0.9615274184454671 1.0653061266728612 1.0 18.38878249518137 1.256207178332613 24.781943860421723 1.0326530401184495 0.9607621675903331 0.4372779263487174 0.03312766700511386 178.914234904277 251260.23841486516 0.02300367059269966 0.00835810257665436 18.038780679838492 -1.256207178332613 -0.07189087252811643 RIEGLIER ddPTM_BT-474_Trastuzumab_2h_R1 1 RIEGLIER 8 1 Q13618;Q13618-2;Q13618-3;A0A087WTG3;H7C399 Q13618 CUL3 Cullin-3 0 108.15 0.010425 0.0 56911.0 63954.0 67874.0 71550.0 63781.0 72987.0 78369.0 63736.0 72794.0 71680.0 False True 56604.597499406525 66082.67022899054 77430.06922861602 80608.22266381331 71903.13229039511 67941.58048291744 74577.99207134722 68492.30396485011 54854.89408962584 67105.32103166456 0.8435187646698967 0.9847605109855376 1.1538588600459805 1.2012195370584284 1.0714967335670242 1.0124618948005373 1.1113573547492097 1.020668747453441 0.8174447755602244 1.0 16.03413954719149 1.416278906202673 6.915808241918124 0.9093872896537049 1.0599249962575876 0.24036672249203828 0.10149273597218074 0.2943014914875167 24.097040619714573 0.06889730329453819 0.026058976504656918 26.078277730690026 -1.416278906202673 0.15053770660388277 RIENAK ddPTM_BT-474_Trastuzumab_2h_R1 6 RIENAK 6 1 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ;;;;; 97.473 0.06579199999999999 3928540000.0 3335610.0 3288770.0 2868380.0 2709220.0 2659830.0 2060110.0 3404230.0 3181490.0 4442620.0 3619230.0 False True 3317651.446381111 3398234.7213465488 3272222.971594097 3052206.974217416 2998543.584452441 1917699.444677313 3239554.3894785224 3418908.9390788763 3347795.8290580735 3388247.642821305 0.979164392959952 1.002947564516544 0.9657567322527236 0.9008216919103124 0.8849835964043149 0.5659856205435134 0.9561149983656538 1.0090493079284018 0.9880611401445414 1.0 21.692107892640557 -0.38405892827336663 8.593115516738678 1.0000000000000013 0.9176651696687368 0.03888708385698292 0.12376727179938388 0.0 0.0 0.12706967678889275 0.029950610046869643 0.4129914604656374 0.38405892827336663 -0.08233483033126454 RIEQHYFEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RIEQHYFEDR 10 1 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 ; 96.64 0.0042859 830650000.0 568360.0 754060.0 722380.0 735830.0 781500.0 791860.0 678270.0 684780.0 953420.0 858480.0 False True 565300.012910732 779158.4312611036 824084.824960481 828986.0025536513 881019.392686594 737120.5820379384 645459.4888569794 735881.760842382 718462.4161734626 803691.071418294 0.7033797350929042 0.9694750370762524 1.0253751152245572 1.0314734504773317 1.0962164742378397 0.9171690569326881 0.8031188995516906 0.9156276422777135 0.893953462622863 1.0 19.616281528850266 -0.18412844634587078 7.890669097847755 1.0000064243109414 0.9333561996624323 0.0359132954137088 0.10858284617848264 0.0 0.0 0.10850441425571918 0.02557473570296445 0.6544425883906482 0.18412844634587078 -0.06665022464850912 RIESLIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RIESLIDR 8 1 Q13619;A0A0A0MR50;Q13619-2;A0A669KAX4;Q13620-1;K4DI93;Q13620;Q13620-3 Q13619;A0A669KAX4 CUL4A;CUL4B Cullin-4A;Cullin-4B 0 ;;; 136.63 0.0012547 1202500000.0 706664.0 974212.0 839681.0 913968.0 805959.0 888391.0 855977.0 764551.0 946487.0 845864.0 False True 702859.3995417515 1006638.0574964103 957900.7861619109 1029676.2550887499 908593.1013567424 826978.6212174706 814570.1223603161 821605.6779313134 713237.9611260213 791880.2353393947 0.8875829553196394 1.2711998766643946 1.2096536110051552 1.3002929093784459 1.1473870173907363 1.0443228461978635 1.028653180125397 1.0375378008761371 0.9006891816416308 1.0 19.59492272677798 2.6771023134411265 2.6549968255371903 1.002506723039459 1.181937667975684 0.3498069329059512 0.11045811341253438 0.3126195055213775 4.34774954019976 0.03818117422392799 0.036618972163461695 475.44722117591436 -2.6771023134411265 0.1794309449362248 RIESLIDRDYMER ddPTM_BT-474_Trastuzumab_2h_R1 2 RIESLIDRDYMER 13 2 Q13619;A0A0A0MR50;Q13619-2;A0A669KAX4;Q13620-1;K4DI93;Q13620;Q13620-3 Q13619;A0A669KAX4 CUL4A;CUL4B Cullin-4A;Cullin-4B 0 ; 162.94 2.2263e-05 134339000.0 68036.0 140879.0 126950.0 143056.0 143860.0 104007.0 113528.0 88533.0 92106.0 102324.0 False True 67669.7017355103 145568.07235184603 144823.45653081904 161166.87493213778 162179.7182749756 96817.24089614295 108036.21692092423 95139.78202146482 69407.71045716775 95793.5947160162 0.706411550126287 1.5196013134634752 1.5118281860092393 1.6824389502233754 1.6930121346397284 1.0106859564374986 1.127802096175655 0.9931747764922109 0.7245548166652434 1.0 16.547641572250157 2.6637440040807245 8.252671880901307 0.9841697128720445 1.4470489858003412 0.39867955944722555 0.2761951174425992 0.35541715950097436 36.21050188869549 0.0910647797230681 0.08582986794157883 461.04572994221786 -2.6637440040807245 0.4628792729282968 RIKEDEDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIKEDEDDK 9 2 P14625;H0YIV0;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 57.859 0.063346 314520000.0 211560.0 407650.0 406870.0 357160.0 419950.0 257550.0 394100.0 395100.0 373010.0 525800.0 False True 210420.98446652584 421218.3838203712 464153.759422563 402376.41937956004 473428.14326133794 239746.17470748746 375035.8773917991 424584.3682771476 281086.68357792305 492242.9938399724 0.42747380277581654 0.8557122987865394 0.9429362433413503 0.8174345280988846 0.9617773115837355 0.4870484246758597 0.7618917528234497 0.8625503533630373 0.5710323703851516 1.0 18.909011146639294 -2.249807392873624 2.274728283228817 1.8813807243119047 0.7618803799938065 0.15002190694527429 0.17847926762323613 14882955.805649694 2542947.3928103447 67441202.09237972 0.04202338476386584 0.005625907756724441 2.249807392873624 -1.1195003443180982 RILDEIEEHNIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RILDEIEEHNIK 12 1 Q15019-2;Q15019-3;Q15019;B5MCX3;H7C2Y0;C9J2Q4 Q15019-2 SEPT2 Septin-2 0 114.72 0.00066678 77594000.0 34806.0 37661.0 33262.0 30234.0 31739.0 41544.0 41696.0 35785.0 52217.0 43077.0 False True 34618.608363310144 38914.523618444764 37945.000481513176 34061.62130003815 35780.77351820834 38672.161064056876 39679.005185811904 38455.45841254807 39348.82002195222 40327.78897992483 0.858430606759604 0.9649555456118958 0.9409144771215252 0.844619111575743 0.8872485802784776 0.9589457305310707 0.9839122399089152 0.9535721988550176 0.9757247054020258 1.0 15.299486689951328 2.6363542510208298 4.8485035934704985 0.972241232619114 0.9023335755055789 0.5374785543589231 0.034946764112672175 0.20758756762372083 7.774158356947255 0.011972214040757144 0.011258863392478315 432.86677351798477 -2.6363542510208298 -0.06990765711353508 RINPPSSGGTSS(ph)SPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RINPPSSGGTSSSPIK 16 1 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6;A0A0A0MT46 A0A0C4DG88 POU2F1 POU domain protein;POU domain, class 2, transcription factor 1 1 RINPPS(0.006)S(0.006)GGT(0.02)S(0.108)S(0.487)S(0.373)PIK 57.482 0.07224 155640000.0 158740.0 154890.0 153220.0 143900.0 129260.0 205680.0 206650.0 182920.0 296220.0 210910.0 True False 157885.3614776719 160045.42001701778 174792.04418788553 162117.72524560068 145720.49481595558 191461.82571864093 196653.55002033827 196570.41924893952 223220.55014464047 197449.54323086442 0.7996238375343679 0.8105636376676115 0.8852491696246316 0.8210590036971996 0.7380138359984679 0.9696746955488145 0.9959686247053231 0.995547601845313 1.1305194557155482 1.0 17.591124504785952 2.569022801038894 4.468135625325992 1.0214803445782668 0.8161239267479143 0.8127913605133024 0.05026462216740148 0.10089890614123584 3.4796102045934916 0.017245743324109157 0.015986016683813557 370.70018352519253 -2.569022801038894 -0.2053564178303524 RIPISK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIPISK 6 1 A0A087WYR0;P09132;D6RBG4;A0A2R8Y4M3;A0A2U3TZN1;A0A087WWU9;P09132-2 A0A087WYR0 SRP19 Signal recognition particle 19 kDa protein 0 118.69 0.034720999999999995 522100000.0 1020600.0 1261300.0 1094200.0 943760.0 1074900.0 1158700.0 1199900.0 1079200.0 1457000.0 1273900.0 False True 1015105.2029993195 1303281.6080280489 1248253.849043105 1063239.9192341068 1211782.1435685467 1078601.7962864132 1141856.2529368685 1159735.3840665617 1097941.872799748 1192598.6113593406 0.8511708745344658 1.0928082555307945 1.0466671998052453 0.8915320788628213 1.0160854893058617 0.90441309088647 0.9574522744373857 0.972444016805184 0.9206298433873729 1.0 20.18567713135137 3.753223121216325 24.76591747961163 0.9529022049917721 1.0064747178448308 0.0782131828962569 0.06852744742890954 1554.5486321794417 2625724.6365111005 0.01653105626815882 0.029644782096334258 5665.3027237713 -3.753223121216325 0.05357251285305864 RIQLVEEELDR ddPTM_BT-474_Trastuzumab_2h_R1 6 RIQLVEEELDR 11 1 P06753-2;A0A087WWU8;P06753-6;P06753-5;D6R904;A0A494C0G0;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;H0YL80;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;H0YKP3;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 ;;;;; 269.81 9.8462e-22 8252140000.0 3375420.0 4084470.0 3731350.0 3853270.0 3856280.0 4048740.0 4240510.0 3390770.0 4746840.0 4228270.0 False True 3357247.113764417 4220419.114835748 4256691.646524395 4341093.586915329 4347354.4000376975 3768860.1335088005 4035380.3309786813 3643806.475381183 3577044.886397219 3958418.188595928 0.8481284578361465 1.0661882887954175 1.075351679311646 1.0966738176936122 1.0982554628922943 0.9521126758074128 1.01944265075491 0.9205208499392179 0.9036551258536976 1.0 21.916492603827706 2.2010364071583908 1.649311790066187 0.9392624343616162 1.0401203646277029 0.17841497703231324 0.07602829056390531 0.5578980801669333 2.9828897521405175 0.042340026494167494 0.025050250434169315 158.86799229753356 -2.2010364071583908 0.10085793026608669 RIS(ph)ACLSDYSLASDSGVFEPLTK ddPTM_BT-474_Trastuzumab_2h_R1 5 RISACLSDYSLASDSGVFEPLTK 23 1 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 RIS(0.995)ACLS(0.004)DYSLASDSGVFEPLTK;RIS(1)ACLSDYSLASDSGVFEPLTK;RIS(0.972)ACLS(0.025)DYS(0.003)LASDSGVFEPLTK;RIS(0.991)ACLS(0.006)DY(0.001)S(0.001)LASDSGVFEPLTK;RIS(0.98)ACLS(0.012)DYS(0.009)LASDSGVFEPLTK 248.12 5.653799999999998e-38 1631940000.0 1189881.0 1158058.0 1093596.0 1076347.0 1120190.0 1407592.0 1239231.0 1294482.0 1650970.0 1350009.0 True False 1183474.8129042077 1196603.2604691563 1247564.8110931653 1212612.4198396553 1262839.556613687 1310288.4781551587 1179284.6622078586 1391082.8200864077 1244110.5653645822 1263850.269819147 0.9364042886769801 0.9467919492080233 0.9871144081582448 0.9594589238907045 0.9992002903907243 1.0367434414067553 0.9330889033054609 1.1006705883644488 0.9843812950584808 1.0 20.269394124781684 3.679550993089371 0.5825947826462428 1.0248883823083397 0.9259613233642421 0.26960846172349207 0.04146711824864598 1.6110888493425095 0.9188050127234147 0.025687506199505352 0.09405716238530598 4781.355035769305 -3.679550993089371 -0.09892705894409759 RIS(ph)EMEEELK ddPTM_BT-474_Trastuzumab_2h_R1 2 RISEMEEELK 10 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 RIS(1)EMEEELK;RIS(1)EMEEELK 255.72 2.3331e-17 284410000.0 930120.0 591200.0 494200.0 536730.0 391010.0 598500.0 546690.0 577800.0 1023920.0 724700.0 True False 925112.3372660461 610877.7346120533 563779.0643365952 604679.9629678329 440802.80580215604 557127.103717457 520244.51614139293 620918.3700089499 771588.6358250638 678449.0255531141 1.3635694096720627 0.9004032898625324 0.8309822007290337 0.8912680838105117 0.649721333806598 0.8211775427980785 0.7668144496445507 0.9152026852757852 1.137283136630665 1.0 19.371880899005987 4.737947848002553 4.285863044065725 0.8613125495715621 1.4013513601250165 0.5743665354058112 0.1246796559672332 0.14636124085112168 6.309126416075163 0.030143884922225975 0.24161923607837166 54695.0278747672 -4.737947848002553 0.5400388105534544 RIS(ph)FSASHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RISFSASHR 9 1 E9PKY8;E9PJM0;Q03393 E9PKY8 PTS 6-pyruvoyl tetrahydrobiopterin synthase 1 RIS(1)FSASHR;RIS(1)FSASHR 148.18 5.5506000000000014e-05 701370000.0 127853.0 169160.0 139219.0 188990.0 122013.0 155491.0 160244.0 130509.0 195530.0 156644.0 True False 127164.65365380382 174790.38834062076 158819.8250867592 212916.11462241874 137550.6323222896 144742.2731564429 152492.38552847362 140248.24429127388 147344.25146776575 146646.84581032448 0.8671489178722653 1.1919137256228314 1.0830088039682726 1.4518969940738313 0.9379719799783484 0.9870125222035463 1.039861339572962 0.9563672748384465 1.0047556812667031 1.0 17.161986515305014 RIS(ph)GLIYEETR ddPTM_BT-474_Trastuzumab_2h_R1 2 RISGLIYEETR 11 1 P62805 P62805 HIST1H4A Histone H4 1 RIS(1)GLIYEETR;RIS(1)GLIYEETR 139.34 2.3957e-05 196095000.0 141027.0 161874.0 132391.0 131813.0 147736.0 184461.0 125926.0 115530.0 182599.0 148888.0 True False 140267.72630157284 167261.8782351008 151030.50203679915 148500.51228490876 166549.3039001239 171709.6452444878 119834.4782959648 124151.43524945294 137599.92315124284 139385.84037057002 1.006326940589218 1.1999918915036116 1.0835426441830156 1.0653916630993978 1.1948796481574981 1.231901639276859 0.8597320787920342 0.890703352072097 0.9871872407227366 1.0 17.088724485681 2.2317550410356564 24.999816065806368 0.9192494405974913 1.1313595093982667 0.6169992441188352 0.07524543132595607 97.72013475433012 358964.89275037457 0.02774615107429661 0.020951042598682024 170.51203635732563 -2.2317550410356564 0.21211006880077543 RIS(ph)IGSLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RISIGSLFR 9 1 Q9NV58-3;Q9NV58;A0A0C4DGD6;A3KCU8;E7EQ63;E7EQV8;E7ETB2;Q9NV58-2 Q9NV58-3 RNF19A;RNF19 E3 ubiquitin-protein ligase RNF19A 1 RIS(1)IGSLFR 143.31 6.2626e-05 73183000.0 61369.0 66080.0 77407.0 63050.0 46070.0 53657.0 57592.0 52883.0 68711.0 65620.0 True False 61038.59612273692 68279.43285379639 88305.23276629462 71032.12353533787 51936.741421716455 49947.81788499182 54806.05493719488 56829.39799443284 51778.09473022886 61432.07541989147 0.9935948884281525 1.1114622513907086 1.4374450506958083 1.1562709390791304 0.8454336121110363 0.8130576338760469 0.8921407027614257 0.9250769668125471 0.8428511388606499 1.0 15.906704503652303 3.2764663587293867 6.493526494412191 0.8826163407248243 1.1914410207608863 0.6038141908769727 0.1141678663206013 0.1253320285937613 14.354897924474098 0.03284889727512682 0.04392874412458061 1890.0198210122535 -3.2764663587293867 0.308824680036062 RIS(ph)IVENCFGAAGQPLTIPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RISIVENCFGAAGQPLTIPGR 21 1 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 1 RIS(1)IVENCFGAAGQPLTIPGR;RIS(1)IVENCFGAAGQPLTIPGR 280.56 3.4289999999999996e-45 2255500000.0 618080.0 637360.0 548090.0 595220.0 599750.0 644990.0 625120.0 596070.0 677500.0 752890.0 True False 614752.3259551441 658574.1423077446 625256.3079163173 670574.7909707192 676124.607503243 600403.3594431464 594880.557409697 640551.7701821303 510539.20303488517 704839.9156184425 0.8721871624080009 0.9343598847263024 0.8870898115463612 0.9513859475202134 0.9592598156277742 0.8518293957803722 0.8439938548141607 0.9087904302640064 0.7243335567721453 1.0 19.42693610192184 2.720605898220165 24.121332500065293 0.862489360198337 0.9214268635678874 0.13878333413224508 0.0683340585252976 968.7041863180679 1301407.0663263286 0.020739110940338732 0.019593718103106037 525.5401470200326 -2.720605898220165 0.05893750336955039 RIS(ph)LDQQ ddPTM_BT-474_Trastuzumab_2h_R1 1 RISLDQQ 7 1 Q96PM5-2;Q96PM5;Q96PM5-8;Q96PM5-7;Q96PM5-6 Q96PM5-2 RCHY1 RING finger and CHY zinc finger domain-containing protein 1 1 RIS(1)LDQQ 65.179 0.075512 745200000.0 645010.0 663960.0 770130.0 726930.0 693040.0 754510.0 691810.0 588250.0 743270.0 754070.0 True False 641537.3378273486 686059.5072277042 878557.6099100413 818959.263466187 781294.536030092 702352.4996254953 658344.5073291567 632148.2020729743 560101.0678077331 705944.607008192 0.9087644150242854 0.9718319262119427 1.2445135229991866 1.1600899777915346 1.1067363193568893 0.9949116299677957 0.9325724721083068 0.8954643123516894 0.793406539617114 1.0 19.4291954591658 2.362612282984438 2.1498107981892214 0.8906866364688942 1.0854986409700558 0.402452395947292 0.09902393816454322 0.3170717772260787 3.00329610962052 0.04526075961438769 0.033992611754592776 230.4688755862134 -2.362612282984438 0.19481200450116154 RIS(ph)LSDMPR ddPTM_BT-474_Trastuzumab_2h_R1 16 RISLSDMPR 9 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 RIS(0.999)LS(0.001)DMPR;RIS(0.998)LS(0.002)DMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(0.999)LS(0.001)DMPR;RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(0.93)LS(0.07)DMPR;RIS(0.554)LS(0.446)DMPR 196.27 1.8325e-05 16159310000.0 4769189.0 5936230.0 5793593.0 6098730.0 5629945.0 5791789.0 5698242.0 4860817.0 5979439.0 5907224.0 True False 4743512.216330714 6133813.827023189 6609280.535586904 6870828.592683123 6346885.124451603 5391416.258834806 5422596.265061667 5223555.847268589 4505886.378827624 5530219.906891085 0.8577438684526681 1.1091446507181348 1.1951207450812624 1.2424150772235178 1.147673190453582 0.9749008809065045 0.9805389941735752 0.9445475831367268 0.8147752629534566 1.0 22.39890541909217 2.6203913827536245 3.709399209282665 0.9373883044723068 1.122200977602531 0.3861144621828414 0.10571975423433454 0.2587092062873156 6.399805153126447 0.03735657094089369 0.03493764684968406 417.24523219352426 -2.6203913827536245 0.1848126731302242 RIS(ph)QSQPVR ddPTM_BT-474_Trastuzumab_2h_R1 8 RISQSQPVR 9 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 RIS(0.998)QS(0.002)QPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(0.964)QS(0.036)QPVR;RIS(0.893)QS(0.107)QPVR;RIS(0.984)QS(0.016)QPVR 188.26 2.4242e-05 13178050000.0 3174810.0 3692690.0 3430400.0 4138190.0 3620590.0 3299540.0 3235560.0 2936430.0 3244240.0 3420660.0 True False 3157717.17571455 3815598.9543717527 3913370.502428684 4662084.429701819 4081650.6755817747 3071450.566081702 3079043.6017604927 3155561.317489408 2444740.522588778 3202350.5502256327 0.9860623083541126 1.1914994609515537 1.2220306431327306 1.4558320073276598 1.2745795975691006 0.9591237804572307 0.9614948624358279 0.9853890971639792 0.7634206450060644 1.0 21.610699812653188 2.7191126648922377 9.064786914553679 0.9394129026435472 1.2366634196236923 0.5828721612909802 0.12335112107396548 0.23155400536282258 101.15618520652298 0.041451086564276755 0.03984862032717226 523.7362868939426 -2.7191126648922377 0.29725051698014515 RIS(ph)QVSSGETEYNPTEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RISQVSSGETEYNPTEAR 18 1 A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H0Y764;H7C3Y7 A0A494C1V1 NBEAL2 Neurobeachin-like protein 2 1 RIS(0.99)QVS(0.008)S(0.001)GETEYNPTEAR;RIS(0.999)QVS(0.001)SGETEYNPTEAR 124.91 1.8881e-05 1009120000.0 220490.0 225040.0 200853.0 216360.0 208726.0 199569.0 221912.0 172668.0 287510.0 242520.0 True False 219302.90633874183 232530.32036044716 229131.35655442765 243751.1538161097 235306.01888407185 185773.2647648943 211177.26877383637 185553.36295033817 216657.01293662004 227042.1659681821 0.9659126770728357 1.024172401495827 1.0092017735002508 1.0735942056255279 1.0363978773751121 0.8182324370131703 0.9301235648158456 0.8172638864638994 0.9542589237233694 1.0 17.792600732234778 2.7546499071397283 24.87117540221202 0.888776749932602 1.0241558532390402 0.4918591076317741 0.058880039457240727 537.006472370655 830115.3587766436 0.017054002523750417 0.01803688099095029 568.3945526933257 -2.7546499071397283 0.1353791033064382 RIS(ph)SSSVQPCSEEVSTPQDSLAQCK ddPTM_BT-474_Trastuzumab_2h_R1 2 RISSSSVQPCSEEVSTPQDSLAQCK 25 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 RIS(0.88)S(0.11)S(0.009)S(0.001)VQPCSEEVSTPQDSLAQCK;RIS(0.688)S(0.156)S(0.078)S(0.078)VQPCSEEVSTPQDSLAQCK 172.36 3.6438e-12 1243210000.0 401680.0 372690.0 362680.0 367990.0 351050.0 451980.0 383210.0 375540.0 574210.0 484140.0 True False 399517.3995108438 385094.76135413704 413742.19152892847 414577.4962691349 395754.13666363305 420735.6864464769 364672.668295639 403564.70175348053 432703.63951979636 453241.7707068931 0.8814664166714847 0.8496453465741443 0.9128509732976297 0.9146939295170082 0.873163424559038 0.9282809168057955 0.8045875112677315 0.8903960928492218 0.9546861465238194 1.0 18.78992130032321 1.1066169877396606 3.202853287686068 0.9977423790363258 0.8804803648310359 0.579126771527428 0.03368302762599468 0.15346353992955727 2.948430267482694 0.03143980890873657 0.008335567143154334 12.78253491738043 -1.1066169877396606 -0.11726201420528992 RIS(ph)TSDILSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RISTSDILSEK 11 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 RIS(0.956)T(0.038)S(0.006)DILSEK 112.62 0.00035594 0.0 234310.0 278590.0 241750.0 248380.0 223600.0 274580.0 251580.0 253090.0 344040.0 298930.0 True False 233048.5009942886 287862.69973878877 275786.2986713308 279824.88253302494 252074.13461896664 255598.93089179546 239410.1142710704 271976.8609649795 259255.95189981145 279852.03147315094 0.8327561524835574 1.0286246564781731 0.9854718481748445 0.9999029882328061 0.9007407710854894 0.9133359852573294 0.8554882128630874 0.9718595199516107 0.9264036803130533 1.0 18.094304694872193 3.231861421113946 24.99885951680265 0.9240773473964867 0.968168817990242 0.06302333109922342 0.0605930649560236 355.6698123643698 1327224.6807808813 0.01683571345958022 0.020563787062667177 1705.5380825701855 -3.231861421113946 0.04409147059375529 RISEMEEELK ddPTM_BT-474_Trastuzumab_2h_R1 1 RISEMEEELK 10 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 82.48899999999998 0.031683 0.0 181440.0 180520.0 154760.0 161420.0 166650.0 188920.0 186590.0 172390.0 245050.0 181260.0 False True 180463.14719987914 186528.49907335572 176548.8628019656 181855.75544923457 187871.8896880627 175860.4050698447 177563.92885698023 185254.61717868285 184660.71100176938 169691.83161550658 1.0634757458967061 1.099219080244229 1.0404087287006005 1.0716824358481167 1.107135728923883 1.036351622795345 1.0463905490708032 1.091712048924305 1.0882121386972814 1.0 17.372557594582982 4.254948804982473 24.998563665737237 1.0653238438446262 1.0813473888300686 0.0494187780597678 0.03119855530000839 915.7642527838967 1396882.6795783266 0.007267535545296602 0.01980053838667113 17986.58875132741 -4.254948804982473 0.01602354498544245 RITEAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RITEAEK 7 1 P15311;E7EQR4 P15311 EZR Ezrin 0 73.665 0.07741100000000001 74117000.0 72694.0 97697.0 84391.0 88926.0 80632.0 72432.0 79251.0 70636.0 87772.0 89467.0 False True 72302.62358106271 100948.78558591635 96272.5192602785 100184.02248221185 90900.00725669293 67424.94632658789 75417.32636178001 75907.21700234023 66141.76668454321 83757.13946344772 0.8632413194175065 1.2052558890215108 1.1494246326582416 1.1961251676453557 1.085280703698846 0.8050053614356382 0.9004286302625311 0.9062775721401845 0.7896851194805669 1.0 16.353924550658075 2.821303144255511 5.937551595845485 0.8793272817747676 1.1162537012144909 0.5229576937649848 0.10448877092466671 0.1711636887071346 9.767482630034918 0.03090126974074638 0.03278541018868763 662.6789024104082 -2.821303144255511 0.23692641943972326 RIVDGK ddPTM_BT-474_Trastuzumab_2h_R1 7 RIVDGK 6 1 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;; 110.9 0.045388 16669360000.0 25509380.0 28568810.0 24940330.0 24595220.0 24838350.0 24889100.0 29513530.0 27095110.0 37182000.0 30232720.0 False True 25372040.332438536 29519705.5706397 28451711.67876551 27708972.330195278 28001366.64406533 23168575.09963937 28085847.8012667 29117084.694380723 28018994.313273955 28303241.926066186 0.8964358358210504 1.042979657515954 1.0052456800916008 0.9790034796217599 0.9893342507268456 0.8185837919260412 0.9923191086954857 1.0287544010131582 0.9899570652176615 1.0 24.754463976731035 2.0111603324493563 24.999890012124638 1.009708291985933 0.9592589338267195 0.13423580835550697 0.05916220544880922 455.1874161110152 1019645.7465543823 0.02288247739095514 0.016886032498579267 102.60306454177665 -2.0111603324493563 -0.050449358159213586 RIVNAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RIVNAK 6 1 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 93.885 0.07233200000000001 410130000.0 376670.0 370560.0 409520.0 400380.0 362640.0 361400.0 413990.0 386080.0 597820.0 469330.0 False True 374642.0505719713 382893.8655917498 467176.85638834955 451068.06694811344 408820.05446432077 336417.26864409173 393963.7221046209 414891.2500745162 450495.2713775871 439376.95758637163 0.8526665864090633 0.8714473050546385 1.0632711805250121 1.026608380707911 0.9304540154087528 0.7656688928161638 0.8966417453222418 0.9442717532426764 1.025304726611727 1.0 18.745099686374722 1.3670913771789897 4.070485969254862 1.0119881727775653 0.9186290219533884 0.1869882431317479 0.07974822152307641 0.426617785545872 11.047457448348698 0.06620430971301791 0.02239213865098221 23.285811482854232 -1.3670913771789897 -0.0933591508241769 RKAEDS(ph)DS(ph)EPEPEDNVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RKAEDSDSEPEPEDNVR 17 2 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 2 RKAEDS(1)DS(1)EPEPEDNVR;RKAEDS(1)DS(1)EPEPEDNVR 103.84 0.0043259 1399610000.0 2030000.0 2434300.0 1866140.0 2183200.0 2336400.0 2605100.0 2778100.0 2442200.0 3315600.0 2624200.0 True False 2019070.7055542022 2515324.2039345736 2128876.2912203423 2459592.8961514626 2633926.691072243 2425015.568745779 2643712.6896273983 2624449.3652403206 2498514.8067637878 2456721.309309345 0.8218558197477519 1.0238541076690963 0.8665518075466323 1.0011688695951129 1.0721308441016109 0.9870942868271535 1.0761142013176177 1.0682731310610598 1.0170119000865392 1.0 21.22830277684856 3.5415075641925107 5.114675385905825 1.0422311529333768 0.9169547823331553 0.5248390144428429 0.055912539099257745 0.16170324307643769 8.357623655405684 0.01402593294693385 0.02166865676785409 3479.4256778053723 -3.5415075641925107 -0.12527637060022145 RKAEGDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKAEGDAK 8 2 P05204 P05204 HMGN2 Non-histone chromosomal protein HMG-17 0 ; 80.755 0.013852 89759000.0 192006.0 191536.0 182816.0 172486.0 154405.0 169340.0 195615.0 188348.0 297116.0 221815.0 False True 190972.26102987205 197911.15997404317 208554.90373484232 194322.70991461189 174067.5615198639 157633.92438348234 186152.35512813227 202403.48417176478 223895.74295042525 207658.57679462427 0.9196454294240151 0.9530603697134005 1.0043163492404386 0.9357798407084257 0.8382392107599672 0.759101438605078 0.896434705474449 0.9746935922225027 1.0781916471086077 1.0 17.66385393417706 1.5398331788293806 3.5541934206809245 1.0374599581678554 0.9008628107313386 0.42242717202981106 0.0651340661947786 0.2134343072683806 5.9749453779499175 0.048697533662458055 0.019408235079665048 34.660368749102155 -1.5398331788293806 -0.13659714743651685 RKAS(ph)PEPPDSAEGALK ddPTM_BT-474_Trastuzumab_2h_R1 5 RKASPEPPDSAEGALK 16 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 RKAS(0.997)PEPPDS(0.003)AEGALK;RKAS(0.991)PEPPDS(0.009)AEGALK;RKAS(1)PEPPDSAEGALK;RKAS(0.995)PEPPDS(0.005)AEGALK;RKAS(0.995)PEPPDS(0.005)AEGALK 159.75 4.708e-09 2354730000.0 4216900.0 3404810.0 3102400.0 2846090.0 2876240.0 4183930.0 4327000.0 3958700.0 6381800.0 4265690.0 True False 4194196.6789416303 3518137.042598893 3539190.9534557937 3206404.702183817 3242512.115189883 3894704.76701183 4117686.479254799 4254118.295871288 4809090.9017387945 3993450.0121590584 1.0502689820008635 0.8809768575760417 0.8862489683556426 0.8029159479700798 0.8119576069106269 0.9752731986511478 1.031110059401638 1.0652739568339555 1.2042446724251745 1.0 21.92920422424749 2.2676881553487602 2.025300134730794 1.0908191941531236 0.8825505145449407 0.5542997814020539 0.07980079339009324 0.2401236654483134 2.00172956769527 0.03810500167671484 0.025780203627475393 185.22011748936148 -2.2676881553487602 -0.20826867960818285 RKAS(ph)VHSSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RKASVHSSGR 10 2 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 RKAS(1)VHSSGR;RKAS(1)VHSSGR 127.17 0.00018945 23595000.0 13590.5 14206.4 10977.900000000001 25798.0 15920.4 10869.3 13387.0 15256.5 20422.0 19267.5 True False 13517.330258046492 14679.251436049855 12523.49289838266 29064.024154871462 17947.768572396228 10117.930874580046 12739.419666693782 16395.01750093725 15389.271740779972 18037.83165426333 0.7493877599667921 0.8138035500836013 0.6942903747204376 1.611281483936127 0.9950069895543229 0.5609283348749197 0.7062611466208445 0.9089239668706082 0.8531663913795671 1.0 14.138738300755858 RKASPEPPDS(ph)AEGALK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKASPEPPDSAEGALK 16 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 RKAS(0.447)PEPPDS(0.553)AEGALK 54.7 0.07356599999999999 1055300000.0 169570.0 159950.0 146850.0 140630.0 154370.0 215780.0 205020.0 187570.0 319310.0 192780.0 True False 168657.0539609983 165273.83905818328 167525.20355691804 158433.74358088107 174028.10447732528 200863.6364914838 195102.39934754313 201567.42586116082 240620.32903478885 180476.61535273836 0.9345091807676085 0.9157631792637427 0.9282377289129287 0.8778630033105681 0.9642695489229473 1.11296212032179 1.081039773303699 1.1168617356171096 1.3332493440465993 1.0 17.461452391326453 2.761973346958009 2.2946381787296657 1.1371385929997133 0.9137430038554484 0.6290313837495418 0.07935694136274381 0.19533779893302855 2.027987380447026 0.027192484415167233 0.027425289767341744 578.0605702212818 -2.761973346958009 -0.22339558914426494 RKDDEDSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKDDEDSFR 9 2 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 74.944 0.022305 265240000.0 121430.0 135280.0 106410.0 142270.0 155990.0 110110.0 143780.0 139270.0 161820.0 112820.0 False True 120776.23437214119 139782.71302151328 121391.60306769935 160281.36741272817 175854.4018748328 102498.3548710598 136824.81210706153 149663.03459873027 121941.62927690815 105619.7310099386 1.143500681333646 1.3234526511751863 1.1493269477866466 1.5175324333826037 1.6649768011460404 0.9704470357097853 1.2954474585263487 1.41699882368236 1.1545345562888596 1.0 16.68851984673875 2.7221160757956397 24.99573051040435 1.2221084749971534 1.3548156256122539 0.172527824875072 0.19264806153673242 2134.148557976152 3243905.606808707 0.06532209178727301 0.061746331016127795 527.3707952991249 -2.7221160757956397 0.13270715061510052 RKDDSYFDR ddPTM_BT-474_Trastuzumab_2h_R1 3 RKDDSYFDR 9 2 Q9HCD5;Q5JY17 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 ;; 182.16 2.6239e-05 1097390000.0 291988.0 382687.0 369486.0 326181.0 311640.0 374210.0 355913.0 329642.0 489510.0 334674.0 False True 290415.9690509162 395424.5054558238 421506.4171701153 367475.48115590843 351325.506765004 348341.74349558813 338696.1284703057 354241.55992815894 368876.8195979436 313314.81879117305 0.9269142460972485 1.2620676767905368 1.3453127394240898 1.1728633920786042 1.1213178748470414 1.1117946633981612 1.0810089665629556 1.1306249774424615 1.1773360130910473 1.0 18.257253480631416 3.2719097012626945 4.2065090869497395 1.1096318908985587 1.1967913986504226 0.08922596849106268 0.10828557638587986 0.4634348028208527 17.97131557893334 0.03095301036265326 0.04106699116098495 1870.2932275832582 -3.2719097012626945 0.08715950775186387 RKDGVFLYFEDNAGVIVNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKDGVFLYFEDNAGVIVNNK 20 2 J3KTJ3;P62829;J3KT29 J3KTJ3 RPL23 60S ribosomal protein L23 0 68.567 0.011766 46353000.0 22365.0 26873.0 26212.0 19337.0 21206.0 30957.0 33390.0 24426.0 39201.0 27944.0 False True 22244.589324985092 27767.451559928446 29902.421761211725 21785.062217332732 23906.458402190558 28817.015454939577 31774.798137813214 26248.792152714803 29540.438816487906 26160.58999593795 0.8503091607811251 1.0614229864173552 1.1430331565861007 0.8327435360102879 0.9138348334614242 1.1015430255745036 1.214605562900034 1.003371566038478 1.1291962001267846 1.0 14.675107457641387 2.7242686991855436 24.044126176754048 1.0931381426978077 0.9689572617804754 0.27862175192554184 0.10362445545577686 703.2360419372403 1183092.150507366 0.03424589683425626 0.03244413033671521 529.9912495118726 -2.7242686991855436 -0.12418088091733237 RKDPELWGSVLLESNPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 RKDPELWGSVLLESNPYR 18 2 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 180.92 4.2824e-14 2187100000.0 1721270.0 2567200.0 2563400.0 2657700.0 2395000.0 2480200.0 2811200.0 2287400.0 3334800.0 2653500.0 False True 1712002.8735710771 2652647.7000948284 2924304.4385277773 2994164.5474998816 2699989.053722834 2308749.6117628026 2675211.5161731173 2458097.4031818504 2512983.22403061 2484151.3582243538 0.6891701135291528 1.0678285327955677 1.1771844854969065 1.2053068093403456 1.0868858875220708 0.9293916830466696 1.076911641199404 0.9895119293129037 1.0116063241117743 1.0 21.244321648320224 1.68016247078877 9.1554441715828 1.0007871622458573 1.0447253736700814 0.007060871893485476 0.13662447072690234 0.6769977235698247 91.46040301831927 0.06784357796574295 0.03621171227533904 47.88091826851429 -1.68016247078877 0.04393821142422416 RKDREDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 5 RKDREDSPER 10 3 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 RKDREDS(1)PER;RKDREDS(1)PER;RKDREDS(1)PER;RKDREDS(1)PER;RKDREDS(1)PER 150.12 0.00012234 1522379000.0 550438.0 568151.0 467367.0 528069.0 523815.0 563157.0 622197.0 581151.0 847675.0 630414.0 True False 547474.5029674108 587061.5625804678 533168.2111732122 594922.4812558653 590519.7353552503 524227.2821189839 592098.9540866415 624519.4386449829 638776.8545130586 590180.4387954203 0.9276391879148453 0.9947153853128066 0.903398649168088 1.0080349028004447 1.0005749030932345 0.8882491652704566 1.0032507266678254 1.0581839003672329 1.0823416238884929 1.0 19.170796578669087 2.000736499287287 24.992222183509796 1.047659377163833 0.9569191750558865 0.49438249409158586 0.04239052767250666 19.84761526700135 673483.0795482532 0.015504941991724227 0.011356861479616117 100.16972910505845 -2.000736499287287 -0.09074020210794642 RKDS(ph)AQDDQAK ddPTM_BT-474_Trastuzumab_2h_R1 10 RKDSAQDDQAK 11 2 Q13045-3;Q13045;Q13045-2;J3KS54 Q13045-3 FLII Protein flightless-1 homolog 1 RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK;RKDS(1)AQDDQAK 231.51 5.282e-13 8259349000.0 5682921.0 3597864.0 3379025.0 3077297.0 3198477.0 3225430.0 4738656.0 4601025.0 7748010.0 5144816.0 True False 5652324.784767886 3717616.7282852824 3854762.3489881866 3466882.4846776333 3605784.0870915465 3002463.6159455306 4509429.105856167 4944376.849031554 5838616.753514867 4816469.438181415 1.1735410879928825 0.7718551474270262 0.8003294526132514 0.7197974635102524 0.7486363473019368 0.6233743729679285 0.9362519919899711 1.0265562592043422 1.2122192050531084 1.0 22.199544580842637 1.8053178093123057 2.6518450267840787 1.0997345764744493 0.7983326072768594 0.40887369628140413 0.1454486624195717 0.24473749458089905 3.265117321113909 0.08428410385990992 0.040406379420902 63.87307274884098 -1.8053178093123057 -0.3014019691975899 RKDS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RKDSPSR 7 2 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;Q7Z6E9-4 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 RKDS(0.713)PS(0.287)R;RKDS(0.831)PS(0.169)R;RKDS(0.625)PS(0.375)R 72.434 0.040649 2145630000.0 948880.0 797870.0 704270.0 721070.0 749950.0 562830.0 788580.0 813330.0 1102510.0 992170.0 True False 943771.335510479 824426.6206274009 803425.0943754214 812357.3880670281 845451.6871980944 523922.88685930934 750433.3727318579 874024.8146060565 830811.1833771103 928848.8611605271 1.0160655570286294 0.8875788678874426 0.864968594967756 0.8745851150121974 0.9102144843476105 0.5640561223326548 0.8079176323629741 0.9409763537999368 0.8944524971899884 1.0 19.82508434015868 6.278723905642819 0.002030513803947174 1.7195435598222415 1.0669732480651534e-07 0.00036209630003691817 0.11953139644269684 5915701.332434579 1264.7317162888444 523805.1098625536 547460.8458177422 1899870.0900829032 -6.278723905642819 -1.7195434531249167 RKEAS(ph)SSEEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKEASSSEEPR 11 2 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 RKEAS(0.697)S(0.228)S(0.074)EEPR 90.348 0.0090995 134600000.0 367700.0 360540.0 337960.0 371670.0 365020.0 440670.0 414490.0 383030.0 611990.0 429330.0 True False 365720.34405531094 372540.3559489673 385541.8303990198 418723.3838918161 411503.1333569559 410207.52012560057 394439.5351944352 411613.64358692995 461173.2647458594 401929.7918320946 0.9099110130360526 0.9268791801942248 0.9592268058598632 1.0417824018049824 1.0238184422240104 1.0205949607660931 0.9813642661234019 1.0240933913126817 1.1473975657383308 1.0 18.616583991210135 3.9465955871301723 2.5413151004047343 1.0308040943132135 0.9174443248442664 0.563924869290835 0.04196960680790666 0.2152605975209416 2.731755443929628 0.011374143207181928 0.026480493017991866 8842.917781937836 -3.9465955871301723 -0.1133597694689471 RKEDEVEEWQHR ddPTM_BT-474_Trastuzumab_2h_R1 4 RKEDEVEEWQHR 12 2 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;; 217.09 2.253e-11 4242410000.0 3497100.0 3021690.0 2895340.0 2724670.0 2797140.0 3724710.0 3549490.0 3025960.0 4777520.0 3666430.0 False True 3478272.0021643336 3122265.1249998244 3302978.7052535787 3069612.942633288 3153339.1990523087 3467229.5647242274 3377787.6083314354 3251772.5007135402 3600164.211488157 3432435.29841135 1.0133539891558039 0.9096355367411927 0.9622843311226613 0.8942959373637752 0.9186886058746054 1.0101369037688726 0.9840790327190704 0.9473660005240515 1.0488658630082373 1.0 21.710801095074306 2.7400920509565574 24.957574848326832 0.9897709420268161 0.9367217220821251 0.3485934605876021 0.039021720981968426 166.52172611594094 2713804.2488160376 0.012050893321535548 0.01216785673058086 549.6573642266014 -2.7400920509565574 -0.05304921994469103 RKEDQDRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 RKEDQDRSPR 10 3 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 RKEDQDRS(1)PR;RKEDQDRS(1)PR 100.19 0.023123 251044000.0 180306.0 153726.0 135465.0 135046.0 140321.0 148150.0 191935.0 161457.0 247521.0 199042.0 True False 179335.2525298799 158842.67698067045 154537.29451711226 152142.80975342155 158190.04760227198 137908.73920758767 182650.37078709734 173505.74120203377 186522.76616147294 186338.96915157055 0.9624141066488687 0.8524393888401612 0.8293342783892381 0.8164841227047178 0.8489370115254751 0.7400960724184907 0.9802049008789308 0.9311296611333184 1.0009863584130536 1.0 17.507569891725428 2.20872799082164 24.993787569254184 0.9682064712150331 0.8407413261648803 0.6005853430050995 0.05427734741560648 151.04002418997632 126540.52839271782 0.020330009394725852 0.015016744341689366 161.70669121353922 -2.20872799082164 -0.12746514505015283 RKEEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKEEEEAK 8 2 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 0 93.649 0.006141300000000001 294100000.0 408260.0 283030.0 265380.0 214780.0 206340.0 224900.0 332310.0 313330.0 569170.0 331880.0 False True 406061.9735219498 292450.4824547518 302743.19727568916 241971.12597811065 232616.1759270017 209353.19235765416 316234.8957525222 336712.27565750165 428905.67998725595 310699.1342632371 1.3069298518801709 0.9412658427524799 0.9743934368970357 0.7787956234635103 0.7486862700103942 0.6738132465482878 1.0178171126946076 1.0837245377459763 1.380453411961777 1.0 18.245158695954903 1.7166504637175313 2.7444218176481003 1.1923410701912434 0.8963809246808591 0.2610472664966571 0.18596209200444744 0.30303598823615513 4.934558647342743 0.11758101720545568 0.0524406462096846 52.077540305988876 -1.7166504637175313 -0.2959601455103843 RKEEEVQQQK ddPTM_BT-474_Trastuzumab_2h_R1 4 RKEEEVQQQK 10 2 Q96CS3 Q96CS3 FAF2 FAS-associated factor 2 0 ;;; 164.64 3.4284e-06 429862000.0 412057.0 398290.0 432756.0 315144.0 446670.0 641019.0 468960.0 394135.0 619904.0 501684.0 False True 409838.53089583665 411546.8418786106 493684.28321741655 355041.19808755815 503550.7768794899 596706.8653264181 446274.6131988286 423547.35507697705 467136.96548802574 469666.09760671906 0.8726168079498474 0.8762540962094834 1.05113885318333 0.755943850102752 1.0721463172356642 1.2704916713534606 0.9501955015976529 0.9018052553404438 0.9946150421936328 1.0 18.841275932243907 3.2033043379162844 24.999887367443353 1.023548170704517 0.8996605697879229 0.26966580416352526 0.11393680910799275 296.54083131140965 210273.4671817721 0.03569743466669232 0.04266820919606318 1596.9978737463293 -3.2033043379162844 -0.12388760091659423 RKEEKE ddPTM_BT-474_Trastuzumab_2h_R1 1 RKEEKE 6 3 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8;Q9NYF8-2;H0YF14;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 93.262 0.05603 55429000.0 100680.0 70943.0 59203.0 62580.0 69487.0 74503.0 81730.0 81724.0 123820.0 99080.0 False True 100137.95006659969 73304.2948690509 67538.26779829925 70502.62158352802 78335.75756828327 69352.78297119758 77776.40766108043 87822.65986606335 93306.22010299558 92756.62957334431 1.0795772822622758 0.7902863138325642 0.7281233493385564 0.7600817527310039 0.8445300128800152 0.7476854569878383 0.8384997171504733 0.9468073632043779 1.0059250808506004 1.0 16.501162778380248 1.6522057323263029 2.726319701851653 0.9989477634685177 0.8152941995306546 0.380543419540907 0.09318964375687942 0.23517818662588227 4.022619579573105 0.06112870555074004 0.025392219697253207 44.89580182472565 -1.6522057323263029 -0.18365356393786303 RKEEWER ddPTM_BT-474_Trastuzumab_2h_R1 4 RKEEWER 7 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 0 ;;; 146.58 0.0012425 1621240000.0 1134270.0 1267040.0 1111320.0 1125680.0 1071310.0 1331190.0 1262100.0 1112050.0 1578620.0 1331260.0 False True 1128163.216349245 1309212.660458147 1267784.1962333964 1268190.9725814303 1207734.9783481462 1239167.9685841964 1201047.4013097954 1195036.8178754793 1189590.2534242528 1246297.8470509732 0.9052115583917104 1.0504813625057965 1.017240139853619 1.0175665276019383 0.9690580636129031 0.9942791536680836 0.9636921095159952 0.958869359120864 0.9544991642560375 1.0 20.249217462014318 2.6628737981702515 1.4892865526387897 0.9657371922362267 1.0006452668334074 0.05933254475602112 0.03799888880701975 0.8079888335179319 3.617470440283799 0.015930055808212898 0.014318352399838962 460.12284684645203 -2.6628737981702515 0.034908074597180705 RKEPEPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RKEPEPK 7 2 P39748;P39748-2 P39748 FEN1 Flap endonuclease 1 0 ;;; 121.62 0.0024862 1588760000.0 2163070.0 1880600.0 1818040.0 1543300.0 1570770.0 1942880.0 2129060.0 1912680.0 3208720.0 2097100.0 False True 2151424.2714596693 1943194.6341532958 2074004.229313038 1738681.6217618852 1770798.2488167896 1808573.2786475732 2026069.2340009774 2055413.8939922447 2417973.9506451655 1963261.2825823613 1.0958420514613365 0.9897789211211505 1.0564076456420572 0.8856088780373254 0.9019676924956128 0.9212086514886494 1.0319916416504695 1.046938536519536 1.2316108773177157 1.0 20.90482075741164 1.6657249780923749 2.5601790450139053 1.1173831680027717 0.9745271871906069 0.28795805622868753 0.08252360715920877 0.2841691051328814 4.197188755862306 0.054908726630692295 0.02273082062549676 46.315352962279164 -1.6657249780923749 -0.14285598081216477 RKEQEEEEQKER ddPTM_BT-474_Trastuzumab_2h_R1 1 RKEQEEEEQKER 12 3 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 169.62 1.8989e-05 329550000.0 208070.0 156750.0 157540.0 139180.0 147720.0 206520.0 214710.0 181490.0 320940.0 210820.0 False True 206949.77423875005 161967.3289926239 179720.26263777263 156800.1737295533 166531.26639496314 192243.7584957881 204323.6570281486 195033.70538754662 241848.6373756694 197365.28710791728 1.0485621725647838 0.8206474976729917 0.9105971230873211 0.7944668286263359 0.8437718143611829 0.974050509655587 1.0352563007517455 0.9881864650337636 1.2253858868476153 1.0 17.590508743252975 2.364295504561728 1.8950571825783256 1.0626666398026487 0.8771566628176173 0.4702694045153205 0.08888147518517345 0.30161798527466255 2.211490896748016 0.03957457120603352 0.028767338393184 231.36385108085557 -2.364295504561728 -0.18550997698503147 RKGDEVDGVDEVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKGDEVDGVDEVAK 14 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 113.72 0.00029188 986640000.0 799250.0 721020.0 626760.0 582740.0 607690.0 905950.0 876150.0 818310.0 1447700.0 949390.0 False True 794946.9268050222 745018.7148342063 715002.3601044201 656514.824250321 685075.7194391772 843323.8088769106 833767.2772819722 879376.4474939829 1090933.733186131 888799.1173863267 0.8944056213092406 0.8382307095725607 0.804458899787179 0.738653776098384 0.770788028518486 0.9488351106342855 0.9380829266953084 0.9893984256869507 1.2274244110347652 1.0 19.761497858509674 1.9945870153408298 1.213068125269071 1.0947041855963147 0.8119433222244901 0.6869823889979042 0.07557717227826982 0.2676857589857896 0.7289601652340524 0.0569412566021003 0.026380052395460683 98.76134943882874 -1.9945870153408298 -0.2827608633718246 RKGDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKGDSPR 7 2 F6XDC4;E9PSF3;E9PI60;Q9ULD4-3;Q9ULD4-2;Q9ULD4;H0Y7B4 F6XDC4 BRPF3 Bromodomain and PHD finger-containing protein 3 1 RKGDS(1)PR 57.598 0.090265 40946000.0 41265.0 37049.0 29455.0 32311.0 30468.0 31156.0 35741.0 37662.0 54145.0 43467.0 True False 41042.83382497251 38282.15356840654 33602.00797255039 36401.56928707853 34347.91920201556 29002.259053335172 34012.07128612105 40472.52968376094 40801.690255828624 40692.898846029064 1.008599411417395 0.9407575929465204 0.8257462339975166 0.8945435277248798 0.8440764894135168 0.7127105680790127 0.8358232578812715 0.9945845794102323 1.0026734740675811 1.0 15.312489437101025 1.6824533514662847 5.656791317938988 1.000452270099592 0.8618661979612268 0.40851327325784914 0.07314598651229501 0.1521883935032292 10.814473271604705 0.04159739245143314 0.020662562948445543 48.13415492597474 -1.6824533514662847 -0.13858607213836516 RKGS(ph)GS(ph)EQEGEDEEGGER ddPTM_BT-474_Trastuzumab_2h_R1 3 RKGSGSEQEGEDEEGGER 18 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER 150.94 2.5219000000000004e-07 3234460000.0 3849630.0 3192230.0 2411110.0 2765470.0 2939400.0 4037320.0 3893650.0 3704850.0 5391500.0 3972890.0 True False 3828904.019814099 3298481.445806216 2750573.3302561883 3115578.218449972 3313715.166811231 3758229.5712290136 3705299.2743125577 3981324.719847111 4062837.06739865 3719336.758837748 1.0294588170097805 0.8868466771578263 0.7395332847235141 0.8376703752481817 0.8909424936952283 1.0104569214655947 0.9962258097517427 1.0704394299297684 1.0923552587016192 1.0 21.826613948709912 2.665233998846052 2.1117681312418246 1.0472897430340278 0.863578469817631 0.5469482455945265 0.07170102914521206 0.24528863750531554 2.161278978987362 0.02816280705377607 0.026517801070104426 462.63022046459963 -2.665233998846052 -0.1837112732163968 RKHDNEGSGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKHDNEGSGSK 11 2 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 125.82 0.0001802 66481000.0 49563.0 45058.0 43294.0 42180.0 42617.0 37851.0 59521.0 53760.0 87741.0 66198.0 False True 49296.15831496698 46557.728291863794 49389.41888180605 47519.98367518717 48044.02233925095 35234.449461669974 56641.741837699294 57771.84418774864 66118.40621916442 61973.18696504092 0.7954433316907673 0.7512559958894321 0.7969481851831604 0.76678295892695 0.7752388523500104 0.5685434489845702 0.9139717450653442 0.9322070885322993 1.0668873017045553 1.0 15.919356540217159 1.8670892024564107 2.480983064917699 1.0069312957504661 0.7488417185558857 0.7094604132505608 0.07349286136538621 0.15289400581151913 1.7191877460525693 0.04143732751060506 0.02047843482687284 73.63583271996022 -1.8670892024564107 -0.2580895771945805 RKHS(ph)PS(ph)PPPPTPTESR ddPTM_BT-474_Trastuzumab_2h_R1 4 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR 192.64 2.6931e-10 1312450000.0 1067360.0 1156290.0 812520.0 1028940.0 1010900.0 1217450.0 1256970.0 1125010.0 1576290.0 1264290.0 True False 1061613.4523548444 1194776.4136579344 926915.7534495557 1159203.6985004041 1139632.1229262683 1133290.5470690369 1196165.5590082975 1208963.958885027 1187834.4507038512 1183601.9297868754 0.8969345399310081 1.0094410828419915 0.7831313299873213 0.9793864553001662 0.9628508489602374 0.9574929869141918 1.0106147420895844 1.0214278368933705 1.0035759665563724 1.0 20.174752523192105 2.8626232308891635 1.106327594102089 1.0119228988595355 0.9114287613804525 0.348899423651719 0.05582658506811444 0.534837347120823 1.3859880249996985 0.02581516365830978 0.02725943832077844 728.8249489696057 -2.8626232308891635 -0.10049413747908298 RKLES(ph)TESR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKLESTESR 9 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 RKLES(0.799)T(0.194)ES(0.007)R 102.97 0.002755 164430000.0 125360.0 101360.0 97938.0 114790.0 100520.0 145450.0 117350.0 123520.0 204670.0 136890.0 True False 124685.07568880543 104733.70632658605 111726.81910764345 129322.40223031625 113320.62617128155 135395.3838524716 111673.33217946626 132737.68962185085 154231.82093749076 128153.56300257471 0.9729349131424493 0.8172516149588589 0.8718198424603986 1.009120614365736 0.8842565397031126 1.0565089310060882 0.8714024765524674 1.0357705748624721 1.2034922582245497 1.0 16.967514064300694 1.5439963591568815 4.807465089568646 1.1075424299695509 0.927096518996864 0.4375166053509548 0.08173199399783253 0.13098898969811545 6.60352001462885 0.04596291229211842 0.0201614603469417 34.994223332745676 -1.5439963591568815 -0.18044591097268692 RKLESTESR ddPTM_BT-474_Trastuzumab_2h_R1 5 RKLESTESR 9 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;; 155.06 4.1744e-05 1038570000.0 787007.0 987434.0 895782.0 857934.0 792455.0 912633.0 1031449.0 823189.0 1351050.0 1008533.0 False True 782769.8417566979 1020300.1437735409 1021900.3193232772 966548.3564340449 893369.4470012222 849544.8288170005 981553.8713521792 884619.5432490434 1018101.8306424818 944167.560491459 0.829058182584932 1.0806346102830025 1.082329410672992 1.0237042627591826 0.9461979889842907 0.8997818442044276 1.03959711435252 0.9369306680994001 1.078306302021792 1.0 19.848683390420373 1.2329752872124848 24.999692204327083 1.0391531246173338 0.9847544388938528 0.08125096024129608 0.07844744618176373 418.1916519533866 1871710.5612133648 0.0669769519553627 0.018576779131117705 17.099180123508606 -1.2329752872124848 -0.054398685723480944 RKPAAPPPS(ph)PAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKPAAPPPSPAAR 13 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 RKPAAPPPS(1)PAAR 55.33 0.068121 88722000.0 43537.0 43815.0 33676.0 34850.0 38579.0 36227.0 35341.0 41809.0 45421.0 51110.0 True False 43302.60162941542 45273.355788273184 38417.28808296068 39262.00642674901 43491.806974352075 33722.71275918517 33631.420814269426 44928.99988180023 34227.60316021777 47848.11604252753 0.905001183138077 0.9461888896113299 0.8029007463703544 0.820554907362556 0.9089554735174201 0.7047866363058544 0.7028786835489559 0.9389920355875081 0.7153385752909516 1.0 15.546174501134095 4.237616673800811 24.99981164903026 0.8206438714997406 0.9255950578564716 0.14850395203550915 0.09670451922265558 40.8499762799429 1082028.4012638456 0.02290640876442626 0.05448207463028033 17282.902256551013 -4.237616673800811 0.10495118635673095 RKPDTIEVQQMK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKPDTIEVQQMK 12 2 P15311;E7EQR4;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y7M3;P35241-4;P26038 P15311;A0A2R8Y5S7 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 ; 182.08 9.7491e-06 1688820000.0 1801890.0 1580650.0 1565640.0 1319230.0 1540310.0 2060100.0 1777390.0 1669800.0 2717900.0 2034300.0 False True 1792188.8244487997 1633260.9797268969 1786068.5032131658 1486244.3827363024 1736459.3483673558 1917690.135953775 1691410.8554108373 1794408.9550725957 2048109.9629941175 1904469.232348145 0.9410437270436197 0.8575937862294275 0.9378300646059821 0.7803982114763882 0.9117812558338688 1.0069420410585102 0.8881271625088876 0.9422094747417638 1.0754229725564368 1.0 20.86095754995459 1.4063133074430023 4.244173355821721 1.0359803228427589 0.9033329769029143 0.45106411697509374 0.05826237600356411 0.19217632617112235 5.721635678919503 0.04213537265292938 0.014873532119669403 25.48668242245884 -1.4063133074430023 -0.13264734593984462 RKPDYEPVENTDEAQKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKPDYEPVENTDEAQKK 17 3 Q9NP61;Q9NP61-2;H0Y6A0 Q9NP61;H0Y6A0 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 0 ; 157.03 1.7864999999999998e-08 71441000.0 122250.0 103735.0 91766.0 89429.0 86798.0 138719.0 125797.0 105796.0 183101.0 114283.0 False True 121591.81958325197 107187.75676586817 104685.85515562934 100750.70223063797 97851.21080794757 129129.68203940174 119711.71851879262 113691.03474120266 137978.21197769832 106989.3610974012 1.1364851452151112 1.0018543495019692 0.9784697663567241 0.9416889791398636 0.9145882338606134 1.206939463091516 1.1189123599851132 1.0626386920630395 1.2896442278226656 1.0 16.707107818211618 2.7382425593314124 24.999998864638766 1.1316316384739862 0.9911818068559948 0.37507041923850803 0.09088048685321871 31.88076529686387 2505810.032526829 0.02826310928213353 0.02819870284019022 547.321564027569 -2.7382425593314124 -0.1404498316179914 RKPEEES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 7 RKPEEESPR 9 2 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33 P49321 NASP Nuclear autoantigenic sperm protein 1 RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR 134.99 0.00018382 5024174000.0 4483550.0 3664147.0 3285426.0 2812725.0 2849954.0 4049157.0 3953950.0 3712331.0 4962610.0 4049990.0 True False 4459411.064969232 3786105.9178713667 3747985.4233652814 3168815.696604807 3212878.748899205 3769248.307280315 3762682.3329441887 3989363.9900548593 3739641.261067088 3791516.170829118 1.1761550957579223 0.9985730634622169 0.9885189076077928 0.8357647848068809 0.8473862708586634 0.9941269237567478 0.9923951694821272 1.052181715786399 0.9863181620690052 1.0 21.854343445353585 2.488061145581007 23.57652301755818 1.0128662339715895 0.9601782286843119 0.03405007269974103 0.08941991221435869 792.844063031405 1708664.3574456892 0.03217413890309656 0.028639454002543994 307.65299378317894 -2.488061145581007 -0.05268800528727757 RKPEEESPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RKPEEESPR 9 2 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33 P49321 NASP Nuclear autoantigenic sperm protein 0 ;;; 187.99 2.2436e-05 487465000.0 321762.0 305258.0 310810.0 283033.0 286016.0 322201.0 321781.0 307965.0 412340.0 317830.0 False True 320029.6691431188 315418.327997642 354569.34639105055 318864.9487799727 322438.4422503508 299928.00324957113 306215.22370720777 330946.9121145831 310724.3320729225 297545.81729204743 1.07556433511886 1.0600664155465251 1.1916462130705516 1.0716499115395062 1.0836598046810073 1.0080061147530281 1.0291363746735218 1.1122552994578034 1.0442907075650136 1.0 18.1827523119013 3.2040338922701714 2.66569945840597 1.0507979528410245 1.1056275056723766 0.2739128113784176 0.045024847813776706 0.4231103969155952 6.151016279274459 0.014134634635468817 0.01847302527439216 1599.6828627319512 -3.2040338922701714 0.054829552831352046 RKPFTFK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKPFTFK 7 2 Q9Y2J8 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 75.189 0.024828 418790000.0 193280.0 201820.0 178920.0 156510.0 191190.0 227130.0 208560.0 154050.0 325300.0 232490.0 False True 192239.40195542687 208537.4566972339 204110.38079948112 176324.14995266823 215536.913228087 211429.03770650964 198471.15602343003 165545.99325004977 245134.17379667622 217652.28915529672 0.8832408917062318 0.958122046437291 0.9377819162464525 0.8101185181050841 0.9902809387605367 0.9714073696493642 0.911872587206373 0.7605984476089352 1.1262650843142337 1.0 17.731665668169917 1.220355835416774 24.99989757104029 1.0631325707760657 0.9014588989612917 0.43227795761344623 0.07342261651048114 269.1215227040568 369564.0470419061 0.07251264702396451 0.018272842470650273 16.60947232784569 -1.220355835416774 -0.161673671814774 RKPGQADNER ddPTM_BT-474_Trastuzumab_2h_R1 3 RKPGQADNER 10 2 Q9NU22 Q9NU22 MDN1 Midasin 0 ;; 96.89 0.0036178 72967000.0 52641.0 64970.0 60213.0 63938.0 51080.0 49855.0 59424.0 58666.0 78517.0 65843.0 False True 52357.58670496494 67132.48717480566 68690.46701922185 72032.54424428914 57584.73522511999 46408.641196046505 56549.43409827533 63043.95481991183 59167.53742389684 61640.84336897166 0.8493976370758148 1.0890909907407 1.1143661128718232 1.1685846641181483 0.9341977182308734 0.7528878363693409 0.9174020180058209 1.0227626906812644 0.9598755336576102 1.0 15.91159898046622 3.1373103839822503 10.854220376276347 0.9290375486283073 1.0618951590310732 0.2578887321723229 0.10294300982109346 0.5163706656401775 51.41968927430954 0.03149610603955243 0.03766335974840156 1371.8618657171078 -3.1373103839822503 0.1328576104027659 RKPNAGGS(ph)PAPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 RKPNAGGSPAPVR 13 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR 134.35 7.6118e-05 1191930000.0 1133140.0 1168040.0 1072870.0 1019490.0 1051720.0 1239090.0 1294050.0 1147780.0 1568650.0 1257870.0 True False 1127039.3001436891 1206917.5053049107 1223920.7704467874 1148557.3294693343 1185650.3079671736 1153434.624804118 1231451.8577489418 1233433.1719087448 1182077.2263330964 1177591.6596833128 0.9570714015134766 1.0249032382154306 1.039342254492473 0.9753443139858968 1.0068433299587296 0.9794860682983342 1.0457375845206933 1.0474200982711184 1.0038091019182234 1.0 20.16740792795119 2.232407709949072 24.99309025664345 1.0308799559482156 0.9997911340913462 0.17517192552231264 0.02694492768703495 221.43359275222042 899452.2959394229 0.00990184847588702 0.007500474213072709 170.76847887548618 -2.232407709949072 -0.031088821856869342 RKPQEESER ddPTM_BT-474_Trastuzumab_2h_R1 5 RKPQEESER 9 2 P26358;P26358-2;K7EJL0;K7ENQ6;K7ERQ1;K7ELB1 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 ;;;; 201.84 1.1706e-05 433851000.0 291266.0 313113.0 303936.0 263112.0 244435.0 302014.0 350198.0 304076.0 422928.0 354662.0 False True 289697.856218695 323534.7769241942 346727.54694092926 296421.9522225187 275562.34837024653 281136.48304448486 333257.58485372557 326767.6951866414 318703.06134485325 332027.167518585 0.8725125066835965 0.9744226032530442 1.0442746282848117 0.8927641507104285 0.829939159586458 0.8467273480828897 1.0037057730677166 0.9841595120927893 0.9598704338765113 1.0 18.340941766734268 2.208010149096922 24.95760388402155 0.9861042319902412 0.9146963900704138 0.28269256464761927 0.059679762940808415 321.4012384626629 262560.5761599133 0.02505263909197949 0.01850481606051726 161.43962834695546 -2.208010149096922 -0.07140784191982741 RKPS(ph)IVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKPSIVTK 8 2 P46100;P46100-4;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;A0A087WWG0;A0A096LNL6;A0A096LNL7 P46100 ATRX Transcriptional regulator ATRX 1 RKPS(0.999)IVT(0.001)K;RKPS(1)IVTK 105.03 0.0035172 1187890000.0 1692120.0 1433600.0 1350690.0 1342720.0 1223100.0 1539160.0 1319330.0 1240510.0 2062620.0 1582670.0 True False 1683009.8139322074 1481316.5093704998 1540855.4115920581 1512708.2143278185 1378854.5351183284 1432761.4919929178 1255508.9675699633 1333083.1553821447 1554314.938691979 1481662.6456080405 1.135892720870707 0.9997663866072573 1.0399502316937512 1.0209531966077456 0.9306130104619584 0.9669957572595381 0.8473649324234203 0.8997211067807395 1.0490343016335704 1.0 20.49878557235826 4.447259899649603 0.664717644380106 0.9333907001456855 1.1755151199387146 0.42077858380710687 0.05942159659246525 2.1059014168613612 0.9086606253605122 0.027203792356047952 0.36489540019682526 28006.568462809497 -4.447259899649603 0.24212441979302912 RKPS(ph)PEPEGEVGPPK ddPTM_BT-474_Trastuzumab_2h_R1 6 RKPSPEPEGEVGPPK 15 2 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK 154.26 1.3088e-06 24521110000.0 16310190.0 12376820.0 12090150.0 10647200.0 10434540.0 15722170.0 15325210.0 14729190.0 21810920.0 15340200.0 True False 16222377.749272455 12788774.971754314 13792338.030532354 11995134.428317977 11763316.81863592 14635333.393907256 14583871.044312544 15828356.951111319 16435911.017354455 14361175.30259403 1.1295995910823704 0.8905103309646463 0.9603906184503627 0.83524740667648 0.8191054402428425 1.0190902266379065 1.015506790845892 1.1021630623958942 1.1444683788788281 1.0 23.775670486759612 2.2846610825080322 2.218908960948612 1.0845481467092328 0.9231528964015147 0.34191744577088323 0.08939229941547143 0.31888727172016706 3.213255583568963 0.03978211364454042 0.02812701389494929 192.6021285812408 -2.2846610825080322 -0.16139525030771817 RKPS(ph)SEEGKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKPSSEEGKR 10 3 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 RKPS(0.898)S(0.102)EEGKR 89.959 0.061656 310930000.0 193470.0 157110.0 121800.0 125660.0 115830.0 149080.0 174270.0 146670.0 220680.0 140570.0 True False 192428.37901653786 162339.31137499955 138948.38129542134 141568.54311578991 130580.263921802 138774.45049657245 165839.8943239507 157615.2601751691 166296.37096049983 131598.70225196815 1.4622361446095489 1.233593558272127 1.0558491756961323 1.0757594162648565 0.9922610305972762 1.054527500057448 1.260193994971333 1.197696158685424 1.263662696628247 1.0 17.005785736580776 4.6437489146542985 2.9291641673518853 1.1239303770270188 1.4868682940163496 0.5582659498497069 0.09440831167912406 0.2636116371901865 3.5267625041675696 0.025452485362062995 0.1988432947309136 44030.0232364189 -4.6437489146542985 0.36293791698933076 RKPS(ph)VPDSASPADDSFVDPGER ddPTM_BT-474_Trastuzumab_2h_R1 5 RKPSVPDSASPADDSFVDPGER 22 2 P16333-2;P16333;C9JAB9;C9K098;C9JVV5;H7C5C7;C9J869 P16333-2 NCK1 Cytoplasmic protein NCK1 1 RKPS(0.537)VPDS(0.266)AS(0.197)PADDSFVDPGER;RKPS(0.998)VPDS(0.002)ASPADDSFVDPGER;RKPS(0.486)VPDS(0.257)AS(0.257)PADDSFVDPGER;RKPS(0.999)VPDSASPADDSFVDPGER;RKPS(1)VPDSASPADDSFVDPGER 237.98 8.023999999999997e-31 3520960000.0 1813730.0 1770424.0 1629676.0 1549027.0 1528389.0 1939995.0 1678089.0 1627576.0 2237540.0 1904335.0 True False 1803965.0792043472 1829351.4925960908 1859120.215402277 1745133.6593746848 1723020.2796786563 1805887.7119070152 1596913.4241474927 1749033.9857834657 1686128.2484998931 1782798.709916779 1.0118725513821782 1.0261121922628522 1.0428099398215633 0.9788730772954999 0.9664693327936538 1.0129509864808652 0.8957340025347206 0.9810608320807628 0.9457760088790963 1.0 20.765712391413103 3.6008575897775383 4.304283946942502 0.9648317488603175 1.026570033078819 0.43098442966224193 0.03078039379412537 0.20175400199511725 6.109637906539184 0.008031867021522796 0.012703925375790435 3988.940788963324 -3.6008575897775383 0.06173828421850147 RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKPVLPALTINPTIAEGPSPTSEGASEANLVDLQK 35 2 P36507 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 RKPVLPALTINPTIAEGPS(0.79)PT(0.201)S(0.009)EGASEANLVDLQK;RKPVLPALTINPTIAEGPS(0.333)PT(0.333)S(0.333)EGAS(0.001)EANLVDLQK 167.97 4.6621000000000006e-15 2107080000.0 498650.0 405830.0 412030.0 333590.0 383280.0 564370.0 526350.0 427370.0 693780.0 506830.0 True False 495965.32380522357 419337.80622058426 470040.24257103837 375822.45979624626 432088.4361214559 525356.4302840789 500888.4396477381 459262.5195408872 522807.2151757086 474483.675481006 1.045273735292243 0.8837770989602165 0.9906352248990166 0.7920661536253227 0.9106497408650107 1.1072170812863074 1.0556494681086013 0.9679205908934836 1.1018444726169236 1.0 18.855998926893456 2.7581383434763835 24.452451338250746 1.0389539174476707 0.918538004833376 0.4051986164077577 0.07347285044092132 637.5683567202213 796317.1397431717 0.022238836320953363 0.023555129160900978 572.978522866565 -2.7581383434763835 -0.12041591261429474 RKPWTS(ph)LSSESVSCPQGSLS(ph)PATSLMQVSERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKPWTSLSSESVSCPQGSLSPATSLMQVSERPR 33 3 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 2 RKPWT(0.303)S(0.335)LS(0.335)S(0.027)ES(0.001)VS(0.013)CPQGS(0.276)LS(0.697)PAT(0.009)S(0.003)LMQVSERPR 87.676 0.00051525 473630000.0 77858.0 73444.0 64690.0 66224.0 78284.0 119930.0 96568.0 92141.0 120580.0 105780.0 True False 77438.821178837 75888.53914216456 73797.7897044401 74607.95160990024 88253.0033743792 111639.52138485316 91896.63691441593 99017.02930251748 90864.67468921987 99029.0298371858 0.7819810141142917 0.7663261900771254 0.7452136997178653 0.7533947543721634 0.8911831562873682 1.1273413621076602 0.9279767464702393 0.9998788180123743 0.9175559413094424 1.0 16.595563885175224 3.0654056633342934 4.093525599893497 0.9914029104554046 0.762158978362459 0.801614414593164 0.05442018375643736 0.08913769077697258 3.0037800265411665 0.015698758597798467 0.01878095342066494 1162.5340000318804 -3.0654056633342934 -0.22924393209294558 RKPYHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKPYHK 6 2 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ; 80.999 0.035454 335190000.0 460430.0 510950.0 455320.0 412490.0 420470.0 361820.0 493670.0 536860.0 951020.0 583430.0 False True 457951.096038582 527956.661874202 519425.0982876137 464711.1917064472 474014.3621790562 336808.2350326653 469789.29609746137 576923.219319842 716653.8640151102 546194.9979004466 0.8384388319170425 0.966608379614694 0.9509883837901566 0.850815539308818 0.8678482300298426 0.616644671458625 0.8601127763954522 1.0562587016313103 1.3120842680176514 1.0 19.05905657627845 1.613508786684677 3.7030741876575797 1.1627793495545722 0.8503935276810984 0.5549872844188921 0.1136337959609113 0.1323590368027432 4.241020260904965 0.07019498573414228 0.03054997941327917 41.06849488052664 -1.613508786684677 -0.31238582187347375 RKQDAPSQSENK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKQDAPSQSENK 12 2 C9J470;E9PHA2;Q15003;Q15003-2 C9J470 NCAPH Condensin complex subunit 2 0 ; 197.3 1.1056e-07 64750000.0 140850.0 115509.0 112317.0 99110.0 107021.0 149299.0 156232.0 134119.0 216182.0 162856.0 False True 140091.67924990598 119353.64723833496 128130.25732313494 111657.31583802273 120649.48998683547 138978.31154204285 148674.46129580223 144127.64082248232 162906.84279038757 152462.39065196362 0.9188605704714606 0.7828399300834246 0.8404056684092451 0.7323597338369864 0.7913393556988776 0.9115579976657863 0.9751549917329556 0.9453324207114947 1.0685051053821282 1.0 17.21809387769186 2.4784357168597975 2.471485047458869 0.9891685113351711 0.8086343359588305 0.7215589139372276 0.05372493787014876 0.15860326195676516 1.9617130730117909 0.02063543127532827 0.01739463255280257 300.9093737675737 -2.4784357168597975 -0.18053417537634064 RKQEEEER ddPTM_BT-474_Trastuzumab_2h_R1 5 RKQEEEER 8 2 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;Q5JVM0 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;;; 184.87 0.00012133 623125000.0 451770.0 427349.0 368218.0 357518.0 355295.0 336104.0 440551.0 388185.0 552338.0 472710.0 False True 449337.7205163653 441573.0531270745 420059.89379176905 402779.742142854 400539.71225154604 312869.92158371315 419239.8650617478 417153.3358634899 416221.7008500109 442541.2430926082 1.0153578395908625 0.9978122039908243 0.949199425699325 0.9101518749486734 0.9050901322833933 0.7069847759211916 0.9473464261364127 0.942631545363546 0.94052635171658 1.0 18.755452389366802 4.071775520331741 1.90853610102145 0.9013011807243261 1.014060854383436 0.2268292818938903 0.07274950417420988 0.5302773818468414 3.7244577507598655 0.020787792980510037 0.0663314795771357 11797.10704990958 -4.071775520331741 0.11275967365910988 RKQEELQQLEQQR ddPTM_BT-474_Trastuzumab_2h_R1 3 RKQEELQQLEQQR 13 2 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 252.04 5.3544e-24 1931550000.0 1374800.0 1390320.0 1462860.0 1423130.0 1367450.0 1531640.0 1711460.0 1502470.0 1888570.0 1724050.0 False True 1367398.2295546406 1436595.9607338116 1668817.972592941 1603298.1120831927 1541586.6519888467 1425761.3318927435 1628670.1413878954 1614591.9407880693 1423157.2290414658 1614019.6529665329 0.8472004829937433 0.8900734003414268 1.0339514574842321 0.993357242668245 0.9551226028477684 0.8833605769745277 1.009077019845722 1.0003545730192842 0.881747149996429 1.0 20.622226714894474 4.420004011592994 6.753008720470371 0.9704486763637786 0.8573750251668308 0.4199220655111352 0.048609863122386035 0.16371728919134 14.926263813356938 0.0119462739403711 0.03366232590967869 26302.92287883059 -4.420004011592994 -0.11307365119694779 RKQGGS(ph)PDEPDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKQGGSPDEPDSK 13 2 Q9ULX6;Q9ULX6-2;V9GZ50 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 1 RKQGGS(0.991)PDEPDS(0.009)K 82.59 0.0094007 130580000.0 128710.0 105230.0 83472.0 91319.0 91343.0 118520.0 148380.0 129100.0 239650.0 136300.0 True False 128017.0396610252 108732.51693712157 95224.13204836957 102879.97603685207 102974.98961762206 110326.99136607019 141202.2925333549 138734.09755651673 180591.4686454767 127601.21730769926 1.0032587647837499 0.8521275833515173 0.7462635079628186 0.8062617129174084 0.8070063263527245 0.8646233452461995 1.1065904817573786 1.08724744546889 1.415280139608669 1.0 16.96128256682646 2.132628807404323 1.9817165808048338 1.1815230067947493 0.8326896012767812 0.6223091923706804 0.11678442350984267 0.20967780544662623 1.6079489025659919 0.06007025901857952 0.035276132640035957 135.71529886315471 -2.132628807404323 -0.34883340551796815 RKRET(ph)DDEGEDD ddPTM_BT-474_Trastuzumab_2h_R1 7 RKRETDDEGEDD 12 3 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD 132.65 0.00041545 4628511000.0 4556320.0 4262100.0 2525080.0 3428003.0 3943550.0 4391770.0 5008020.0 4835310.0 7393000.0 5119130.0 True False 4531789.279374747 4403961.422006148 2880589.31561119 3861987.8283189377 4445737.717247878 4088177.2770145643 4765762.940105762 5196145.385406674 5571094.211124591 4792422.740692308 0.9456155111057856 0.9189426017475989 0.601071623158825 0.8058529135017499 0.9276597574540454 0.853050220779144 0.9944370932972632 1.0842418681654207 1.1624797127808881 1.0 22.192323743519424 2.126743098798277 1.6134948950562593 1.097948874000021 0.8272322588758969 0.5490188907095737 0.09887650553198696 0.28960194662224953 1.4474001478008507 0.06120087751860844 0.03345380993014135 133.88844536023117 -2.126743098798277 -0.27071661512412404 RKS(ph)ELPQDVYTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSELPQDVYTIK 13 2 E9PFR3;Q14738;H0Y8C4;Q14738-2;Q14738-3 E9PFR3 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 1 RKS(1)ELPQDVYTIK 101.53 0.00099217 272830000.0 617180.0 252680.0 285970.0 300830.0 241560.0 328640.0 257360.0 330530.0 599700.0 420030.0 True False 613857.1714551436 261090.30105171443 326232.0903042005 338915.0471552048 272321.23416170676 305921.89033534686 244910.51358932638 355195.8269973317 451911.9705682961 393223.3257942254 1.5610904317928902 0.6639746015177735 0.8296356520694259 0.8618894783789093 0.6925358092927911 0.7779851048191287 0.6228280407696073 0.9032928712454013 1.1492501612297095 1.0 18.584989378540342 4.745962782662063 24.954297626204138 0.819373393251058 1.5610907912149892 0.6726716657996625 0.15198017357902333 499.789879226643 1684857.7480156133 0.03571393299880775 0.3722746671375712 55713.80023390933 -4.745962782662063 0.7417173979639312 RKS(ph)HEAEVLK ddPTM_BT-474_Trastuzumab_2h_R1 7 RKSHEAEVLK 10 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK 173.25 1.8093e-06 8678750000.0 6887480.0 5235100.0 5028841.0 4369517.0 4311456.0 7494690.0 7789790.0 6191018.0 11759010.0 7975990.0 True False 6850398.5729509685 5409347.138815218 5736858.1013304535 4922697.404183327 4860494.365598177 6976599.72090257 7412968.097812401 6653023.200512413 8861159.548161255 7466955.489611413 0.9174286069445244 0.7244381122053166 0.7682994909119252 0.6592643294890604 0.6509338876280245 0.9343298926328055 0.9927698254162458 0.8909954277574837 1.1867165353388758 1.0 22.832088700510486 2.587973881769529 4.815246670682137 0.9921820572610736 0.7404897641405899 0.6365740620176552 0.0977614144844675 0.15697117500197733 5.633320188879187 0.03261116072754553 0.030442568793274703 387.2343561608579 -2.587973881769529 -0.2516922931204837 RKS(ph)LSDS(ph)ESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 RKS(0.982)LS(0.047)DS(0.668)ES(0.233)DDS(0.069)K;RKS(0.977)LS(0.039)DS(0.616)ES(0.365)DDS(0.002)K 88.471 0.038826 4260100000.0 10771500.0 7285600.0 4831500.0 5875500.0 6307100.0 9973100.0 8936600.0 9157300.0 16608400.0 8963000.0 True False 10713507.440826152 7528096.791761801 5511733.203849171 6619337.6975714145 7110271.799889465 9283683.071152179 8504302.516872758 9840664.225827212 12515482.361158064 8390973.666389644 1.2767895439523904 0.8971660609442587 0.6568645574382652 0.7888640771315273 0.847371483046112 1.1063892511471363 1.0135060429205083 1.1727678594969684 1.4915411320249152 1.0 23.000406796219263 2.143090202732386 1.340612234156781 1.2384974740309294 0.8823947921558739 0.3238487395794998 0.19274670567936306 0.4907988170005292 1.679291316751743 0.12755050603158208 0.06761894065181034 139.02413536166335 -2.143090202732386 -0.35610268187505545 RKS(ph)LSDSES(ph)DDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 RKS(0.996)LS(0.024)DS(0.001)ES(0.844)DDS(0.134)K 132.74 0.00056746 5117600000.0 11668000.0 7601200.0 5144500.0 6279000.0 6126200.0 11020000.0 10391000.0 10180000.0 18663000.0 10213000.0 True False 11605180.784436664 7854201.34697756 5868800.883204401 7073920.756199622 6906335.257167774 10258213.338289702 9888347.632525226 10939683.292992584 14063753.721387543 9561197.596210793 1.2137789923969278 0.8214662721843826 0.6138144122793018 0.7398571868238655 0.7223295186269166 1.0729004640961657 1.034216428749897 1.1441750034878582 1.4709196813337655 1.0 23.188759904884105 2.297253246125086 1.5210163652934936 1.2080512751823669 0.8101739002004545 0.4191526236679667 0.1894255991461116 0.37625720945880947 1.7368472489677886 0.10433348530220399 0.06633334471966318 198.26828322900715 -2.297253246125086 -0.39787737498191234 RKS(ph)LSDSESDDS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 RKS(0.972)LS(0.305)DS(0.187)ES(0.042)DDS(0.494)K 163.56 0.0010117 266450000.0 957360.0 652790.0 411060.0 533970.0 549660.0 859440.0 833340.0 833140.0 1536700.0 815690.0 True False 952205.6801326948 674517.7205301111 468933.6750024299 601570.5472508223 619655.9429099343 800028.9357041462 793028.1605320525 895313.1373991971 1158000.8757250302 763631.965852656 1.2469431908464979 0.8833021019188978 0.6140833490107084 0.7877754915342245 0.8114588841472069 1.0476629731062266 1.0384952385362407 1.1724406224921562 1.5164384513841427 1.0 19.54251797007004 2.109584936363569 1.4341155810876862 1.25304578474726 0.8571481336603333 0.3787963939699821 0.19352765714074635 0.41713225480936966 1.6278712141287528 0.12551325792717646 0.06547167242057292 128.70189348352363 -2.109584936363569 -0.39589765108692676 RKS(ph)LSDSESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 6 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 RKS(0.967)LS(0.032)DS(0.001)ESDDSK;RKS(0.996)LS(0.001)DS(0.003)ESDDSK;RKS(0.993)LS(0.005)DS(0.002)ESDDSK;RKS(0.622)LS(0.373)DS(0.004)ESDDSK;RKS(0.992)LS(0.008)DSESDDSK;RKS(0.985)LS(0.012)DS(0.001)ES(0.002)DDSK 258.9 3.1032999999999998e-24 14457900000.0 7039765.0 5505874.0 4595004.0 4641553.0 4855192.0 6693030.0 6693720.0 6318967.0 11140980.0 6150070.0 True False 7001863.687431414 5689133.687718879 5241940.622709247 5229173.13389085 5473471.922222414 6230356.589797921 6369919.191106402 6790520.404604265 8395434.760483539 5757567.267260171 1.2161149600885794 0.9881141502366056 0.9104436612520391 0.9082261467661904 0.9506570515201384 1.0821161613215045 1.106356017293677 1.179407914731258 1.4581566086467348 1.0 22.457027930848287 2.058868112046529 1.6436308806828455 1.2342773297834644 0.9893623987541454 0.32279588497559863 0.1331863872813362 0.40276856000673217 2.052941571462162 0.08054560709388442 0.04156669963145856 114.51651211853105 -2.058868112046529 -0.24491493102931894 RKS(ph)PENTEGK ddPTM_BT-474_Trastuzumab_2h_R1 13 RKSPENTEGK 10 2 Q15651;A0A087WZE9;Q15651-2 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 RKS(0.999)PENT(0.001)EGK;RKS(0.997)PENT(0.003)EGK;RKS(0.5)PENT(0.5)EGK;RKS(0.533)PENT(0.467)EGK;RKS(1)PENTEGK;RKS(0.994)PENT(0.006)EGK;RKS(0.5)PENT(0.5)EGK;RKS(1)PENTEGK;RKS(0.53)PENT(0.47)EGK;RKS(1)PENTEGK;RKS(1)PENTEGK;RKS(0.999)PENT(0.001)EGK;RKS(0.992)PENT(0.008)EGK 194.86 2.1742e-07 48648788000.0 12275668.0 9967586.0 9292155.0 8072744.0 8484733.0 9369402.0 12083843.0 11827426.0 19010017.0 11241562.0 True False 12209577.167442935 10299351.074477019 10600409.655140866 9094752.562682917 9565213.454597445 8721717.292939939 11499301.349326955 12710048.5865723 14325253.031527143 10524115.88877455 1.1601522917916711 0.9786428792049625 1.0072494228657909 0.8641820993613107 0.9088852266250784 0.8287363409065912 1.0926619842330487 1.2077070150975204 1.3611835125083562 1.0 23.327195704490823 1.9961037974188327 4.475622704753114 1.2022663275325731 0.9540948808429328 0.4400756253819479 0.1177581591297393 0.1718851236082072 8.635023780520996 0.050642536883913764 0.03257920933191379 99.10687843964634 -1.9961037974188327 -0.2481714466896403 RKS(ph)PENTEGKDGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 RKSPENTEGKDGSK 14 3 Q15651;A0A087WZE9;Q15651-2 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 RKS(1)PENTEGKDGSK;RKS(1)PENTEGKDGSK;RKS(0.994)PENT(0.006)EGKDGSK;RKS(1)PENTEGKDGSK;RKS(0.705)PENT(0.295)EGKDGSK 115.57 0.0022759 2461340000.0 1617610.0 1470698.0 1305065.0 1392052.0 1314136.0 1733404.0 2033401.0 1900341.0 4264440.0 1944408.0 True False 1608900.9674933655 1519649.2938742856 1488806.8081716697 1568285.6404696917 1481483.430105681 1613577.8614741117 1935037.6252838427 2042154.0951560738 3213525.9025683966 1820314.2167485603 0.8838589253932101 0.8348280093030743 0.8178845138236474 0.861546663779267 0.8138613743026752 0.8864282037835641 1.0630239589845103 1.1218690028163176 1.7653687879823226 1.0 20.79575607459289 1.7432145565903763 1.9221227921977013 1.3727446668646992 0.8515542078157561 0.5488262825088828 0.18334048641133116 0.21007590654708755 1.5628174050583619 0.11941368792900227 0.049196578155205256 55.36235509692377 -1.7432145565903763 -0.5211904590489431 RKS(ph)PPKEYIDEEGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RKSPPKEYIDEEGVR 15 3 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 RKS(1)PPKEYIDEEGVR;RKS(1)PPKEYIDEEGVR 122.64 0.00059477 5233600000.0 2557500.0 1906890.0 1782980.0 1795760.0 1747760.0 2605400.0 2245500.0 2578600.0 4132100.0 2588200.0 True False 2543730.7041649623 1970359.6809106553 2034008.0860600201 2023103.031876579 1970326.876214874 2425294.8304519015 2136876.5863569817 2771028.225865487 3113799.3223032504 2423018.8601305 1.0498187802087355 0.8131837986620273 0.8394520238899302 0.8349514174923169 0.8131702598917266 1.0009393118472378 0.8819067079989187 1.143626354487494 1.2850908317467846 1.0 21.208374203709326 1.708412046367416 4.445187909028972 1.1657115091063692 0.8837859129816726 0.5752155283468777 0.09878796358592383 0.10911364697918534 5.05677392591966 0.051239953048692624 0.0250504650207323 51.09895825778123 -1.708412046367416 -0.2819255961246966 RKS(ph)QEALHEQSSYILSSAETPARPR ddPTM_BT-474_Trastuzumab_2h_R1 5 RKSQEALHEQSSYILSSAETPARPR 25 3 Q9NVE5;Q9NVE5-3 Q9NVE5 USP40 Ubiquitin carboxyl-terminal hydrolase 40 1 RKS(1)QEALHEQSSYILSSAETPARPR;RKS(1)QEALHEQSSYILSSAETPARPR;RKS(1)QEALHEQSSYILSSAETPARPR;RKS(1)QEALHEQSSYILSSAETPARPR;RKS(1)QEALHEQSSYILSSAETPARPR 259.43 3.7924e-45 2628110000.0 413952.0 347603.0 319295.0 322080.0 335767.0 423037.0 418578.0 373940.0 557512.0 416564.0 True False 411723.3284263908 359172.75572454894 364248.9606381081 362855.29497639334 378524.9372030703 393793.4479119836 398329.7830167589 401845.3016288451 420120.6378780588 389978.5288816172 1.0557589660311133 0.9210064891382271 0.9340231157923066 0.9304494173486729 0.9706301992794487 1.0097823822283418 1.0214146511067967 1.0304292976878997 1.0772917141948388 1.0 18.57303516987649 2.608124465983781 1.9434508887235689 1.0348995763465954 0.9551446848121762 0.41503133966462746 0.03945667370614417 0.3063702400483399 2.304741766337359 0.015225934390997606 0.013645623259562588 405.62476822146135 -2.608124465983781 -0.07975489153441917 RKS(ph)QVNGEAGSYEMTNQHVK ddPTM_BT-474_Trastuzumab_2h_R1 3 RKSQVNGEAGSYEMTNQHVK 20 2 Q05D32-2;Q05D32;H0YMH7 Q05D32-2 CTDSPL2 CTD small phosphatase-like protein 2 1 RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK 255.32 1.9492e-36 1752710000.0 1738950.0 664506.0 742659.0 927858.0 588014.0 921611.0 836738.0 988696.0 1577860.0 1259380.0 True False 1729587.6864155058 686623.680507641 847218.9318922526 1045324.7276645756 662894.097467965 857902.2008089378 796261.7862904317 1062477.5160165601 1189017.545240774 1179005.2901905356 1.4669889107418612 0.5823754025706516 0.7185878968832583 0.8866158077167268 0.5622486200726348 0.7276491530163488 0.6753674414486726 0.9011643330666109 1.0084921205473305 1.0 20.169138761021433 -0.41526662004890014 7.097936380690056 0.9999979512771509 0.8147752203682611 0.030394400846635583 0.25091630574970464 0.0 0.0 0.22683880323075428 0.053466418666902445 0.38435574770680225 0.41526662004890014 -0.18522273090888974 RKS(ph)VEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSVEDR 7 2 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 RKS(1)VEDR 71.03 0.043647000000000005 68656000.0 145750.0 131960.0 108270.0 109760.0 120090.0 112090.0 141780.0 124290.0 175210.0 154860.0 True False 144965.29819434718 136352.20882849547 123513.47490028951 123655.60474605366 135382.7496708039 104341.48213147826 134921.5597478033 133565.15093183177 132031.8431937155 144976.70221768375 0.9999213389243781 0.9405111769183538 0.8519539554350808 0.852934318787192 0.9338241772634995 0.7197120677694037 0.9306430459786388 0.9212869991433696 0.9107107636885585 1.0 17.145461551949012 0.8119164912342804 1.1157869441059338 0.9982846724158021 0.8873890605975924 0.1662739160941098 0.07127073524976237 1.3316749089297613 3.1309017289510197 0.06777290222527911 0.02133535767333593 6.485097221927109 -0.8119164912342804 -0.11089561181820973 RKS(ph)VEPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSVEPPK 8 2 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 RKS(1)VEPPK 59.542 0.051115 109900000.0 105290.0 84942.0 105600.0 99125.0 78515.0 118330.0 92777.0 113120.0 185420.0 126140.0 True False 104723.13033881877 87769.2431214766 120467.56210834564 111674.2148364847 88513.41985513503 110150.1256188585 88289.02206744225 121561.58881172117 139725.7255007062 118089.63720611262 0.886810501043677 0.7432425503034185 1.020136609430704 0.9456732824199425 0.7495443457129476 0.9327670761372857 0.7476441130337572 1.0294009846058605 1.1832175016071067 1.0 16.849522843005026 1.5666660768833092 5.609838471228543 1.0957691453753768 0.8644926977862243 0.5001027231875356 0.09731938180149538 0.10775534823975273 7.079940045478445 0.05245678267757196 0.02404622882411715 36.86940057554364 -1.5666660768833092 -0.23127644758915256 RKSLS(ph)DSESDDS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 RKS(0.101)LS(0.9)DS(0.077)ES(0.04)DDS(0.882)K 128.06 0.0019907 0.0 382080.0 254750.0 156100.0 208820.0 220550.0 358950.0 325240.0 327160.0 584290.0 321480.0 True False 380022.9237330783 263229.19975037273 178077.5231544767 235256.59058920274 248635.73519773295 334136.6313774123 309506.89866254444 351574.3404848185 440299.55858487624 300962.87116712506 1.2626903852271236 0.874623500000441 0.5916926644934551 0.7816797788939369 0.8261342478343955 1.110225424424084 1.0283889752323463 1.1681651597800873 1.4629696908373038 1.0 18.19922599169742 2.338334509049195 1.410465350282148 1.21220145423433 0.8499620479530672 0.3458184921700962 0.19542107759414465 0.4576022780649411 1.8174361040781335 0.11067826567435822 0.0717915262913003 217.93877679807144 -2.338334509049195 -0.36223940628126283 RKSLS(ph)DSESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 RKS(0.243)LS(0.373)DS(0.373)ES(0.011)DDSK;RKS(0.394)LS(0.546)DS(0.055)ES(0.005)DDSK 93.51 0.0043953 1367550000.0 223685.0 200032.0 155207.0 183202.0 171041.0 231355.0 211773.0 205103.0 372960.0 208166.0 True False 222480.70481373987 206689.94419810246 177058.79651657218 206395.35441587583 192822.05751056684 215361.97340108993 201528.73093857797 220408.82735193102 281049.0054079571 194880.6676601212 1.1416253212029943 1.0605974757772128 0.908549825092805 1.0590858338798215 0.9894365604640444 1.105096652155815 1.0341135083242388 1.1309938025065258 1.442159495769568 1.0 17.572231455467627 1.5145460703167848 4.894774471793632 1.2406697767885086 1.0410878382746573 0.26916304535175517 0.1161487661324762 0.16724211031125996 8.805470486457645 0.06465569601760496 0.027679156226907014 32.699873328977844 -1.5145460703167848 -0.1995819385138513 RKSLSDS(ph)ESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 RKS(0.063)LS(0.008)DS(0.929)ESDDSK 189.87 3.8539e-06 789870000.0 952680.0 775890.0 640990.0 647290.0 654960.0 935890.0 897810.0 871890.0 1603400.0 930570.0 True False 947550.8767326985 801715.0296145915 731235.8204150429 729236.8476318617 738365.2737479359 871194.1271480895 854379.5003327356 936954.8591677103 1208263.5544592424 871180.2258989407 1.087663434687069 0.9202631163802295 0.8393622796712426 0.8370677225592299 0.847545951798943 1.000015956800597 0.9807149828855802 1.0755006040235808 1.3869272035100166 1.0 19.73261168248463 1.6577666064575745 2.421332331779674 1.19914676614791 0.9169371047970848 0.45590773751587077 0.11554135509012019 0.206829489872636 2.7075789675157282 0.07727557828021024 0.031195748539449748 45.47436113932539 -1.6577666064575745 -0.28220966135082526 RKT(ph)DTVVESSVSGDHSGTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKTDTVVESSVSGDHSGTLR 20 2 Q9NXL2-1;Q9NXL2 Q9NXL2-1 ARHGEF38 Rho guanine nucleotide exchange factor 38 1 RKT(0.984)DT(0.016)VVESSVSGDHSGTLR 106.51 0.011453 102400000.0 47155.0 57375.0 49649.0 58411.0 52798.0 46869.0 63220.0 56913.0 60336.0 61164.0 True False 46901.12271941304 59284.69219108006 56639.14764315583 65805.82661098518 59521.51234173618 43629.05634775859 60161.8070761471 61160.13705835817 45467.001260978395 57260.46115486504 0.8190839153838733 1.035351287701654 0.9891493449549974 1.1492367557608134 1.0394871284874212 0.7619403593303355 1.0506692727017193 1.0681041651576324 0.7940383354232795 1.0 15.805251668873055 RKT(ph)SDANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKTSDANETEDHLESLICK 19 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 RKT(0.49)S(0.49)DANET(0.02)EDHLESLICK;RKT(0.458)S(0.458)DANET(0.084)EDHLESLICK 180.9 1.5541e-12 393100000.0 628640.0 685350.0 595570.0 632460.0 590880.0 739860.0 646210.0 544180.0 1060270.0 677390.0 True False 625255.4720884704 708161.4604471755 679421.0792127599 712529.3711524159 666125.0655798526 688715.219643105 614950.3535380734 584789.4748900495 798980.6653901081 634158.3902572442 0.9859610496280552 1.116694931939499 1.0713744226220123 1.1235826602615486 1.050408030255093 1.086030288685024 0.9697109791271875 0.9221504972169992 1.2599071110074003 1.0 19.27448369382291 2.2651755105623264 24.985778765311842 1.017538365963818 1.075646115909932 0.013152894229945256 0.09122822084597221 569.8334206015991 534951.6779956953 0.031221334791033287 0.026114813950292543 184.1516059321785 -2.2651755105623264 0.05810774994611401 RKT(ph)SQSEEEEAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RKTSQSEEEEAPR 13 2 Q7RTP6;A0A5F9ZHV5;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;J3KSK6;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 RKT(0.671)S(0.318)QS(0.011)EEEEAPR 178.57 2.3285e-05 248090000.0 177260.0 186310.0 172660.0 175000.0 178680.0 219200.0 216780.0 168340.0 260980.0 218060.0 True False 176305.65185543735 192511.21572322666 196969.0272123767 197154.98205684553 201433.8388806665 204047.21994129784 206293.5232199805 180902.38561319927 196664.97595283296 204143.22410944148 0.8636370500395332 0.9430203552581354 0.964857041283826 0.9657679451126453 0.9867280178384835 0.9995297215052694 1.0105332867153418 0.8861542498036439 0.9633676396107107 1.0 17.639222157082223 4.780843618189482 2.0679264791481358 0.9673342214386035 0.8268800854517105 0.4901421351327274 0.033108218257444554 0.7969182813948802 3.42173784791371 0.009307753727495436 0.21779814573971085 60373.11972380022 -4.780843618189482 -0.14045413598689294 RKTS(ph)DANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKTSDANETEDHLESLICK 19 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 RKT(0.362)S(0.615)DANET(0.022)EDHLESLICK;RKT(0.376)S(0.607)DANET(0.017)EDHLESLICK 191.42 5.0589e-15 932690000.0 734140.0 779740.0 631140.0 691640.0 635060.0 829960.0 706960.0 675390.0 1156190.0 753630.0 True False 730187.4718106218 805693.1745372172 719999.0260327773 779201.5530845533 715931.1267044778 772586.8187156909 672761.6439505366 725791.0313609284 871262.4666522577 705532.6881848965 1.0349449203964651 1.1419643455642017 1.0205041355136895 1.104415948592237 1.0147384220373021 1.0950404306614094 0.9535513452698146 1.0287135429942305 1.2349002126233577 1.0 19.42835340061833 3.2465024354567262 24.98674866647419 1.0489992339820726 1.076282598454387 0.014385754695692032 0.07726650265992846 851.1174098052068 2677797.018969786 0.021105477454965986 0.028074278007912724 1764.0156567774432 -3.2465024354567262 0.027283364472314275 RKVDWLTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RKVDWLTEK 9 2 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3QL52;Q14240;Q14240-2;E7EQG2;P38919;I3L3H2;J3KTN0 P60842;Q14240;P38919;J3KTN0 EIF4A1;EIF4A2;EIF4A3 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 ; 161.17 3.641e-05 3497600000.0 3562700.0 3931700.0 3849700.0 2945800.0 2450800.0 3518800.0 3995600.0 3401300.0 7538300.0 4154200.0 False True 3543518.819053182 4062564.2577371616 4391704.297807748 3318737.977960318 2762894.8529703203 3275553.638364229 3802317.563325739 3655122.277451435 5680586.973044843 3889075.3994104415 0.9111468550057826 1.0446092812582188 1.1292412326265266 0.8533488392802611 0.7104246046217456 0.8422448273594236 0.9776919120421644 0.9398435108780683 1.460652311833806 1.0 21.890995774603123 1.3401505315365965 9.905953663371056 1.2294469842803206 0.9267062717466901 0.3990502730627644 0.14940472080043588 0.28464408523166856 24.929197416209306 0.10065398998746229 0.036796306275890436 21.885200590980325 -1.3401505315365965 -0.30274071253363055 RKVMDS(ph)DEDDDY ddPTM_BT-474_Trastuzumab_2h_R1 2 RKVMDSDEDDDY 12 2 O14737;K7EQA1 O14737 PDCD5 Programmed cell death protein 5 1 RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY 144.73 4.985e-05 2033250000.0 2494330.0 2828480.0 1722090.0 2275810.0 2639550.0 3138940.0 3356500.0 2865520.0 4963800.0 3390610.0 True False 2480900.8044261136 2922624.246947733 1964545.3033253907 2563927.3126559407 2975681.0466614175 2921952.4660699647 3194133.271924828 3079359.6532157254 3740538.001512275 3174218.3669527383 0.7815784919699107 0.9207382445315077 0.6189067909689407 0.8077350126095202 0.9374531625302397 0.9205266079016013 1.0062739555600293 0.9701158827872081 1.1784123110292521 1.0 21.597969949571386 2.692249763942672 0.9845444895173838 1.0471012216295812 0.7790111219705905 0.6153351671185145 0.08891335922770288 0.3746637896282595 0.7630595372010147 0.05114519052657694 0.045089460792719964 492.32259034721625 -2.692249763942672 -0.26809009965899067 RKVMDSDEDDDY(ph) ddPTM_BT-474_Trastuzumab_2h_R1 1 RKVMDSDEDDDY 12 2 O14737;K7EQA1 O14737 PDCD5 Programmed cell death protein 5 1 RKVMDS(0.007)DEDDDY(0.993) 111.06 0.0014034000000000002 678450000.0 1688300.0 1844900.0 1166900.0 1593700.0 1781800.0 2162900.0 2204400.0 1942600.0 3502000.0 2388300.0 True False 1679210.3803877623 1906306.3812343986 1331189.3771233775 1795462.256594259 2008701.6684439867 2013383.813918945 2097764.7503742287 2087566.6763229265 2638979.0243958216 2235876.649273496 0.7510299733813082 0.8525990831622197 0.5953769308141043 0.8030238417569497 0.8983955662744967 0.9004896645676559 0.9382291957187602 0.9336680880858254 1.1802882888254616 1.0 21.09240916788534 2.4982906690874276 0.7117994159233497 1.0513960738579176 0.7376845866227211 0.656123076467509 0.08611247871338872 0.45578373920653986 0.47026362640132335 0.06797212381822715 0.053873366346545735 314.98557767125186 -2.4982906690874276 -0.3137114872351965 RKVS(ph)SAEGAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RKVSSAEGAAK 11 2 P05114;A6NL93;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 RKVS(0.822)S(0.178)AEGAAK 80.53399999999998 0.019017 89196000.0 53067.0 53090.0 46550.0 39635.0 37654.0 56349.0 42877.0 50986.0 83155.0 59031.0 True False 52781.29316829798 54857.06855641729 53103.83538014668 44652.78693613191 42449.0137072566 52453.72626127823 40802.87570395377 54790.834221662015 62662.56446991274 55263.591041018284 0.9550825810273917 0.9926439365060576 0.9609190134012723 0.8079964782416923 0.7681189895124564 0.9491552263106737 0.738331963872356 0.9914454198424172 1.1338851364798699 1.0 15.754041691405627 1.5080877731174662 6.606869344435672 1.0660899188036534 0.8832997012894979 0.4292722903531413 0.08743424576881643 0.11948046612683669 11.59164725845849 0.05051753749730523 0.02288398974043997 32.2171985141197 -1.5080877731174662 -0.18279021751415558 RLAAAEETAVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 RLAAAEETAVSPR 13 1 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 RLAAAEETAVS(1)PR;RLAAAEET(0.001)AVS(0.999)PR;RLAAAEET(0.095)AVS(0.905)PR;RLAAAEETAVS(1)PR;RLAAAEET(0.003)AVS(0.997)PR 189.44 3.2216e-06 3536990000.0 1827994.0 2114002.0 1860674.0 2133748.0 1970651.0 2219126.0 2160991.0 1764023.0 2312706.0 2191325.0 True False 1818152.2834132246 2184365.2786288075 2122640.7259316677 2403880.2780218897 2221601.7238864084 2065723.0428807144 2056455.6095427098 1895663.3537872944 1742770.5949726924 2051472.7624122794 0.8862668404504194 1.0647790790360105 1.034691156920701 1.1717826929348174 1.0829301585628066 1.006946365913081 1.0024289121560508 0.9240499744964821 0.8495216835944772 1.0 20.968228568890428 1.9737444642383188 1.9111941210878012 0.9145176121704636 1.0517946051652707 0.3218316835595423 0.07508552323356053 0.37025789901157563 2.5116701878973613 0.04577262020150971 0.02289823490450966 94.1335558444348 -1.9737444642383188 0.1372769929948071 RLAEDEAFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLAEDEAFQR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 139.32 6.616699999999999e-05 265810000.0 157270.0 281790.0 246660.0 297070.0 225960.0 243690.0 263100.0 229580.0 277680.0 288630.0 False True 156423.2757943395 291169.2098043481 281387.5839928461 334679.03154072695 254734.66663015113 226844.2838845569 250372.8478603969 246712.42538361863 209249.48472136815 270209.3862914248 0.5788965288779225 1.0775688209821026 1.0413686506410456 1.2385914350871983 0.9427306361423583 0.8395129680650768 0.9265882702918621 0.913041655472085 0.7743975425623798 1.0 18.043718265017844 3.003652398697149 24.98538897879786 0.8907675550555816 1.0068459670045582 0.0599857896667797 0.16520297214144333 267.0068840340729 1826516.651874141 0.047432351968286296 0.05644977567537825 1008.4454218417278 -3.003652398697149 0.11607841194897661 RLAPEYEAAATR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLAPEYEAAATR 12 1 H7BZJ3;P30101 H7BZJ3;P30101 PDIA3 Protein disulfide-isomerase A3 0 ;; 220.4 4.7529e-11 1474440000.0 608240.0 1004340.0 993140.0 979810.0 976890.0 740690.0 979800.0 825850.0 970470.0 908220.0 False True 604965.3034218173 1037768.8497636503 1132965.4794723713 1103853.8455378178 1101291.1510193304 689487.8436967146 932403.3308005199 887479.120581327 731310.6721317576 850256.6220337376 0.7115090759008669 1.2205360392035527 1.3324982718304732 1.2982596276609977 1.295245602892384 0.8109173463977517 1.0966140182128716 1.0437779578341377 0.8601058235601012 1.0 19.697538811521685 2.7501845910670366 24.944560400625768 0.9827006258200275 1.1903022071497122 0.24009117829227156 0.182917898496236 1111.012467852559 2384184.3692097045 0.056949777117918175 0.05993539409608309 562.5803916597293 -2.7501845910670366 0.20760158132968476 RLDDNIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDDNIR 7 1 E7EVT8;F6VX93;Q5VIR6-2;Q5VIR6-3;Q5VIR6-1;Q5VIR6;I3L0S6 E7EVT8 VPS53 Vacuolar protein sorting-associated protein 53 homolog 0 ; 89.296 0.031316000000000004 185550000.0 83318.0 154561.0 145369.0 152065.0 146598.0 115802.0 132212.0 99764.0 103838.0 119814.0 False True 82869.42514549998 159705.46945090257 165835.69163000077 171316.41340842439 165266.38634557804 107796.88030858635 125816.40046111298 107208.89627132719 78248.51625791368 112167.36794207388 0.7388015486669517 1.4238140056328914 1.4784664619717438 1.5273284605991344 1.4733909636796136 0.9610360150757521 1.1216845217058835 0.9557939910535533 0.6976049959407378 1.0 16.775293498373443 2.72676496308164 23.500268385713795 0.9600205116423127 1.3530562852489982 0.3997473188001748 0.23227331288768605 344.09451810339226 685531.2328978581 0.07602017408363104 0.07228635525479632 533.046336729746 -2.72676496308164 0.3930357736066855 RLDECEEAFQGTK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLDECEEAFQGTK 13 1 K7ESG5;K9J957;P61289;P61289-2;B3KQ25;P61289-3;K7ENH2;K7EMD0;K7EPX6;K7EKR3 K7ESG5 PSME3 Proteasome activator complex subunit 3 0 ;;; 241.76 1.0688e-16 1880840000.0 2144120.0 2075270.0 1928640.0 1924700.0 2026920.0 2390150.0 2198690.0 2191560.0 2964480.0 2433860.0 False True 2132576.296154128 2144344.107422794 2200175.747960602 2168366.8226560648 2285036.247503918 2224924.5563079026 2092330.9648885464 2355105.33571619 2233923.625996839 2278528.971067619 0.9359443409468241 0.9411089938514358 0.9656123647748467 0.9516520747331393 1.0028559112124213 0.9764741131491518 0.9182814839998157 1.0336078082047342 0.9804236217150751 1.0 21.119671283598237 7.999999999999341 0.1858571891444181 1.0068060502677199 0.6762563398839601 0.31185854792036305 0.027758913096284324 63.40752398830905 0.7290745462962801 0.058187089749187244 5.981091213170828 99999999.99984825 -7.999999999999341 -0.3305497103837598 RLDEEEEDNEGGEWER ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDEEEEDNEGGEWER 16 1 Q99613-2;Q99613 Q99613-2 EIF3C Eukaryotic translation initiation factor 3 subunit C 0 ; 227.0 8.710899999999999e-15 2359900000.0 463210.0 578240.0 516750.0 545220.0 499380.0 520260.0 498050.0 499560.0 615980.0 608380.0 False True 460716.12882746913 597486.3688465382 589503.9083284813 614244.7960973344 562973.0829428432 484295.65076030797 473957.4187642363 536839.7039142797 464179.98270912067 569552.6675396768 0.8089087367769623 1.0490449837194653 1.03502966788829 1.0784688249301269 0.9884478030359234 0.8503088096353626 0.832157315339444 0.9425637601405524 0.8149904462993047 1.0 19.119469731093726 2.8099235022903177 6.286084879304459 0.8848665249422673 1.0032750335988165 0.26825606241285826 0.08491342095766385 0.2869147293854728 20.352730561564528 0.025419855599471273 0.026937945978259204 645.5405119091837 -2.8099235022903177 0.11840850865654928 RLDEELEDAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDEELEDAEK 11 1 Q15008;Q15008-4;Q15008-3;Q15008-2;C9J0E9;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 186.58 6.3565e-06 1827870000.0 1674510.0 1538970.0 1226660.0 1264710.0 1262010.0 2128500.0 1800780.0 1340700.0 2449500.0 1748920.0 False True 1665494.6242155521 1590193.6861229902 1399363.0656801441 1424822.1563263638 1422719.4929806893 1981361.8049500536 1713669.3917523588 1440749.8419366558 1845853.5466183778 1637302.428274257 1.0172186857201513 0.9712278310116963 0.85467598503173 0.8702253974106354 0.8689411732444924 1.2101379505302758 1.046641941133987 0.8799534020451122 1.1273748299292128 1.0 20.64288939783945 RLDEVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDEVSR 7 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ; 110.12 0.011025 281380000.0 968960.0 1010350.0 821550.0 829210.0 949300.0 600090.0 920170.0 952920.0 1185780.0 1081980.0 False True 963743.2270215754 1043978.8889805265 937217.0989593875 934187.9009791836 1070187.7280580732 558607.1907599153 875657.8617092425 1024031.7292297137 893560.407637943 1012927.1100703179 0.9514438081874144 1.0306554919909814 0.9252562100883305 0.9222656711343542 1.0565298503895115 0.551478171732551 0.8644825999853571 1.010962900537458 0.8821566712494364 1.0 19.950098931297816 RLDGESSELQEQMVEQQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLDGESSELQEQMVEQQQR 19 1 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-4;Q7Z406-5;A0A0C4DFM8 Q7Z406 MYH14 Myosin-14 0 182.98 4.0777e-15 0.0 57301.0 55081.0 46948.0 52131.0 50675.0 69073.0 66334.0 40163.0 71452.0 63967.0 False True 56992.49778273961 56914.33778783238 53557.870320668655 58730.779254888126 57128.16087574302 64298.146090352486 63125.17099951187 43160.167003581606 53843.61200774715 59884.57129509602 0.9517058659716372 0.9504006884740465 0.8943517363888106 0.9807330667105839 0.9539712757436284 1.0737013674775675 1.0541141004157313 0.7207226514305198 0.8991232773867487 1.0 15.869896733428154 1.7525259189667968 24.999999999870653 0.8467702655131228 0.9780808310964584 0.24734582754948964 0.08129775403643229 4.878487045956534 8745.491834912551 0.03731821133727543 0.020694838371412765 56.56215127281473 -1.7525259189667968 0.13131056558333554 RLDINEGAARPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RLDINEGAARPR 12 2 Q9BUP0;H7C0I0 Q9BUP0 EFHD1 EF-hand domain-containing protein D1 0 ;;; 205.31 5.8075e-08 3435490000.0 994570.0 1353600.0 1219920.0 1266640.0 1195800.0 1261420.0 1282120.0 991800.0 1334880.0 1216150.0 False True 989215.3456271156 1398653.7577315215 1391674.132265274 1426996.4941284754 1348078.0419381075 1174221.004463283 1220098.9574259694 1065813.1522583526 1005916.7104755846 1138534.2658016009 0.8688498671848447 1.228468742437699 1.2223383819594102 1.2533627989876779 1.1840469649712073 1.031344457284785 1.071640085041219 0.9361274265276083 0.883519047858744 1.0 20.118746281403123 2.1676915904191887 1.4334356512774606 0.9343156546098041 1.1612217079084182 0.3839746719885687 0.10945024217684707 0.40374553686073 1.596682696686596 0.06747976247960444 0.03713779071187434 147.12673266121206 -2.1676915904191887 0.22690605329861402 RLDLLHQQLQELHAHVVLPDPAATHDGPQS(ph)PGAGGPTCSATNLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLDLLHQQLQELHAHVVLPDPAATHDGPQSPGAGGPTCSATNLSR 45 1 Q16512;Q16512-2;Q16512-3;K7EM57;K7EKY9 Q16512 PKN1 Serine/threonine-protein kinase N1 1 RLDLLHQQLQELHAHVVLPDPAAT(0.01)HDGPQS(0.99)PGAGGPTCSATNLSR 136.65 8.312700000000001e-11 1140800000.0 118960.0 132500.0 170450.0 152720.0 144060.0 145140.0 126860.0 33897.0 135970.0 78342.0 True False 118319.53257769864 136910.18240205848 194447.87842204087 172054.33634126576 162405.18708948273 135106.81342281002 120723.29714773825 36426.56626547834 102462.0154046545 73342.14648803938 1.613254291609725 1.8667326899736396 2.6512433536936553 2.3459135651194005 2.214350068360322 1.84214424982562 1.646028960543523 0.4966662145812541 1.397041405399336 1.0 16.162354869246883 2.0622188744271055 2.6135282134367643 0.9250918409722101 2.134671452172031 0.674640531443268 0.3457565973013012 0.15567742969706141 2.069973436699845 0.1731956146469093 0.10404664278576213 115.40347182346677 -2.0622188744271055 1.2095796111998207 RLDLPIER ddPTM_BT-474_Trastuzumab_2h_R1 1 RLDLPIER 8 1 P17812;B4E1E0;P17812-2;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3 P17812 CTPS1 CTP synthase 1;CTP synthase 0 109.88 0.005666 152030000.0 74224.0 80929.0 86620.0 64396.0 63735.0 97995.0 75529.0 74598.0 83623.0 95673.0 False True 73824.38623106165 83622.67284238638 98815.34308546314 72548.52699732943 71851.27446305835 91220.83630541731 71875.37372120071 80164.88156096863 63015.23214079149 89567.06723022378 0.8242358325890359 0.9336319188328687 1.1032553162812346 0.8099910965137468 0.8022063989029735 1.0184640306569677 0.802475462732879 0.8950263086644591 0.7035535949705345 1.0 16.450680747129613 RLDLVHTAALMLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDLVHTAALMLDK 14 1 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 163.99 2.7218e-06 239900000.0 462920.0 474960.0 456260.0 406290.0 377880.0 493560.0 502320.0 456400.0 697270.0 533120.0 False True 460427.6901552471 490768.7564806171 520497.44211698644 457726.2723421481 426000.77812976396 459441.3589152691 478020.86255125294 490458.88555224135 525437.1514393134 499095.82517300424 0.9225236255896282 0.9833156915518163 1.0428807773268063 0.9171110020475207 0.8535450641810058 0.9205473893836128 0.9577737148683904 0.9826948269547856 1.0527780937802442 1.0 18.92895731049943 1.5568916163915485 2.7140771488283573 1.0255585803710332 0.9423461512089669 0.32775653080373357 0.04792320091620094 0.3116147950883238 5.077232066761433 0.03814308646157396 0.014194170380018653 36.0488667348585 -1.5568916163915485 -0.08321242916206628 RLDPDAIPSPIQVIEDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDPDAIPSPIQVIEDDR 18 1 P53992;G5EA31 P53992 SEC24C Protein transport protein Sec24C 0 ; 168.27 3.3897e-11 129681000.0 54998.0 61697.0 48722.0 50071.0 54370.0 60897.0 51383.0 46248.0 62610.0 53335.0 False True 54701.896878852254 63750.54734837592 55581.63410078428 56409.98346610469 61293.69722376215 56687.33372611861 48897.40798787826 49699.260602585535 47180.604431017266 49931.11463760918 1.0955472810064133 1.2767699621982331 1.1131662992942482 1.1297561425479472 1.227565169906991 1.1353108004406636 0.9792973448072735 0.9953565219461573 0.9449139033535581 1.0 15.607651492590417 2.29018648764552 4.235121175476741 0.9799625960849672 1.1702132282725353 0.7490622040117297 0.05214803082056897 0.09851649864935472 3.665469973704022 0.018275047553489507 0.014608156800924034 195.0682049979416 -2.29018648764552 0.1902506321875681 RLDPDAIPSPIQVIEDDRNNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDPDAIPSPIQVIEDDRNNR 21 2 P53992;G5EA31 P53992 SEC24C Protein transport protein Sec24C 0 ; 97.059 0.0006677 894900000.0 28389.0 41940.0 21187.0 40482.0 36320.0 40637.0 32452.0 22536.0 46726.0 37990.0 False True 28236.15677831442 43335.947546734635 24169.945439294694 45607.01704928701 40945.136714494074 37827.85983920856 30882.172781321176 24217.750755489255 35211.00339632188 35565.44567512465 0.7939210726118775 1.218484591549625 0.6795906807994747 1.2823406591298725 1.1512617355764536 1.0636127038797747 0.8683195780369746 0.680934831429028 0.9900340830242802 1.0 15.118188621798907 2.187191714537848 5.8057055113565 0.8369289804252533 1.0409009174726214 0.10325723269402354 0.192068114320289 0.3131670891564662 23.018527028810187 0.0701027128981226 0.0520412980970311 153.88337916970838 -2.187191714537848 0.20397193704736805 RLDPNKYPVPENWLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDPNKYPVPENWLHK 16 2 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ; 107.75 0.00066304 2658000000.0 2475800.0 2734200.0 2417900.0 2398300.0 2502780.0 3201400.0 3125300.0 2639200.0 3965500.0 3194200.0 False True 2462470.567887239 2825206.1941411956 2758319.303236447 2701924.5340967616 2821494.1978607248 2980094.753284995 2974117.299194597 2836150.5055860505 2988255.6599776237 2990343.4213077943 0.8234741703380357 0.9447765009229684 0.9224088723662802 0.9035499116402839 0.9435351731697675 0.9965727454747264 0.9945738265385917 0.9484363853920467 0.999301832252679 1.0 21.511879747315074 7.624623812314586 0.3054231609310748 0.992629168161885 3.202965689685021e-14 0.719657009351216 0.02803269401340426 25.26312807415622 0.44738524379699746 0.028586774661057503 13.227197215135824 42133138.63202954 -7.624623812314586 -0.992629168161853 RLDQELDFILSQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDQELDFILSQQK 14 1 P37198;M0QXN5 P37198 NUP62 Nuclear pore glycoprotein p62 0 ; 225.32 4.5232e-12 453460000.0 567920.0 671140.0 654680.0 586260.0 578010.0 639180.0 714310.0 595430.0 932550.0 690860.0 False True 564862.3818218433 693478.4891873022 746853.2534194293 660480.455889408 651616.1473663186 594994.9910678763 679756.0963708096 639864.010132276 702735.5480297906 646768.7233249971 0.8733606951769738 1.072220198933203 1.1547454700343331 1.0212003643186698 1.007494833727273 0.9199501608690116 1.0510033522898672 0.9893242933003555 1.086532979543401 1.0 19.302890388568525 3.4864092404423337 24.717784045457083 1.0067240741349628 1.045762084795895 0.012099142500809124 0.07649054627914278 1347.3730921094577 3585712.5628032354 0.02077070629876939 0.029776414308765375 3064.850115200333 -3.4864092404423337 0.039038010660932265 RLDQVEQELNELR ddPTM_BT-474_Trastuzumab_2h_R1 4 RLDQVEQELNELR 13 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ;;; 244.44 7.7781e-17 929290000.0 310164.0 400601.0 379295.0 434177.0 383185.0 415437.0 384317.0 363384.0 388392.0 406354.0 False True 308494.11148645985 413934.76211658167 432696.43910875905 489143.7636828295 431981.3384345647 386718.818023508 365726.1184764886 390501.5593065635 292677.9957861629 380420.1398228379 0.8109300197148498 1.0880989694955465 1.1374172758315748 1.2857988115734995 1.1355375102793952 1.0165571628347632 0.9613742286273479 1.026500751217905 0.7693546296535809 1.0 18.537234100376093 2.4685819572322227 2.9555518558877805 0.9507131245209425 1.103972739560573 0.23449430356292833 0.12761623756195847 0.40838548786505585 7.327797152869481 0.04877503417480724 0.04158507609934653 294.1588758885236 -2.4685819572322227 0.15325961503963048 RLDS(ph)SGER ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDSSGER 8 1 A0A087X2H1;Q9ULT8;G3V4V5;A0A087WVU6 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 RLDS(0.964)S(0.036)GER;RLDS(0.738)S(0.262)GER 145.95 0.00034376 612200000.0 215027.0 228230.0 233500.0 262150.0 240950.0 194235.0 193253.0 223764.0 261030.0 242080.0 True False 213869.3185237457 235826.49758205164 266374.77038161684 295338.1631211552 271633.5542774597 180807.99163000874 183904.6140918484 240462.4059305689 196702.65412279905 226630.2471448851 0.943692738361701 1.04057821298358 1.1753716625977246 1.3031718706653705 1.1985759081125826 0.797810503707468 0.8114742688087785 1.0610340365416486 0.867945283565996 1.0 17.789980897350624 2.7478943216795124 24.96369230043298 0.9158104859864012 1.1390718337588428 0.4820312071951457 0.11616372713921298 639.3327168525926 1709942.9783420237 0.03893956939055292 0.04079265285973734 559.6214103871059 -2.7478943216795124 0.22326134777244155 RLDVFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDVFEK 7 1 A0A087WW66;Q99460-2;Q99460;C9J9M4;H7BZR6 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ; 98.582 0.017889 752940000.0 394803.0 496560.0 456720.0 473900.0 440340.0 471790.0 454970.0 429568.0 577370.0 469410.0 False True 392677.42451473715 513087.6994231413 521022.20611859544 533895.691409939 496414.68890033953 439176.26777420094 432961.3629458185 461624.5454621058 435084.89986162615 439451.85191788006 0.8935618835169146 1.167562947303318 1.18561841040087 1.2149128262399667 1.1296224756679465 0.999372891154113 0.9852304889745364 1.0504553421437604 0.9900627291995803 1.0 18.745345581092216 2.7419732308078983 23.513447962761756 1.0099637986221845 1.1301072232777438 0.3070157002651649 0.08395781468858168 157.63691995817868 1086145.82112983 0.02638569784177675 0.02693616563415568 552.0434111910947 -2.7419732308078983 0.12014342465555927 RLDVTVQSFGWSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDVTVQSFGWSDR 14 1 Q52LJ0;Q52LJ0-1;Q8NCA5;E9PH82 Q52LJ0;Q8NCA5 FAM98B;FAM98A Protein FAM98B;Protein FAM98A 0 ; 220.27 7.541000000000001e-12 1630630000.0 510840.0 575350.0 546980.0 574770.0 533580.0 592930.0 596760.0 519060.0 617160.0 579230.0 False True 508089.6941996602 594500.1769435807 623990.0295646113 647535.8230675039 601528.2502235617 551942.1447070873 567892.4389554181 557794.8929332737 465069.1875203105 542263.0454962474 0.9369801213997282 1.096331719229602 1.150714648079277 1.1941359981020228 1.1092923539959805 1.017849453860501 1.0472637655691919 1.0286426441300505 0.8576449960640531 1.0 19.048633330395866 1.7749324755385785 1.2526465279324426 0.9404874765542868 1.097676547141321 0.36533021499697904 0.07556880498718009 0.4783836927362465 1.40649279842747 0.06350403696538987 0.025278791617123535 59.55695366909952 -1.7749324755385785 0.15718907058703424 RLDYITAEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLDYITAEIK 10 1 O15212 O15212 PFDN6 Prefoldin subunit 6 0 106.01 0.003966300000000001 228640000.0 367500.0 403560.0 363130.0 281010.0 226330.0 343750.0 388410.0 286490.0 591000.0 347940.0 False True 365521.42083308805 416992.25064282847 414255.5476174582 316585.83718739584 255151.78393698894 319987.3716004609 369621.1244297101 307869.33856674284 445355.96899426955 325734.17131357885 1.122146378929359 1.2801612092499715 1.2717595637783465 0.971914723931816 0.7833129171190288 0.9823573937915602 1.1347324198107605 0.9451551776873977 1.3672374844748258 1.0 18.313335548787432 3.738780198899477 24.999990573140998 1.0147995062086037 1.2302362743458144 0.2740251444867997 0.14698419815504296 23.91563561077136 2722738.8350602794 0.03858324107253567 0.06446565972415604 5479.995462699908 -3.738780198899477 0.2154367681372107 RLDYITAEIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLDYITAEIKR 11 2 O15212 O15212 PFDN6 Prefoldin subunit 6 0 ; 143.42 2.0918e-05 499060000.0 591710.0 703790.0 644550.0 584630.0 498070.0 642720.0 719990.0 557330.0 1003510.0 700540.0 False True 588524.2991051618 727215.2246999615 735297.0374709677 658644.098056536 561496.2622078211 598290.2792001414 685161.3330711037 598920.7946643961 756208.4068450746 655830.9374375324 0.8973719681548548 1.1088455624575175 1.1211685748524245 1.004289460070297 0.8561600713770894 0.9122629706030426 1.044722494715134 0.9132243699946575 1.1530538797082948 1.0 19.3229644338606 3.482236251068817 24.995825611811185 0.9692136914984667 1.0513718334270254 0.07026049848027005 0.09565389372997596 447.5194752222879 2186929.561817206 0.025780688878074616 0.03591317213756541 3035.542034146707 -3.482236251068817 0.08215814192855875 RLEAFEHPNVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEAFEHPNVVR 12 1 F8W1L8;F8VYH9;F8VTV8;F8VWX7;P11802;F8VYY1;Q96BE9 F8W1L8 CDK4 Cyclin-dependent kinase 4 0 ; 83.182 0.008404700000000001 166368000.0 114427.0 170006.0 157760.0 174196.0 157187.0 144924.0 160657.0 132946.0 182335.0 165349.0 False True 113810.93774603478 175664.546939203 179971.2367254982 196249.19573928197 177203.832729658 134905.74499440074 152885.40714066057 142867.1056061092 137400.9824138242 154796.285257599 0.7352304194938538 1.1348111270685648 1.1626327881577077 1.2677900856128461 1.1447550723505429 0.8715050543357802 0.9876555298871772 0.9229362666446532 0.8876245459325656 1.0 17.240011325087455 2.7431596339039563 24.863278305311 0.9332215632172841 1.1056051410497487 0.2435368341431764 0.13510569186028226 498.1848198299327 2693297.6374524473 0.04255977933862214 0.04380119639675166 553.5535418593669 -2.7431596339039563 0.1723835778324646 RLEDELGGQFLDLSLHDTVTTLILGGHNK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLEDELGGQFLDLSLHDTVTTLILGGHNK 29 1 Q9H269-2;Q9H269 Q9H269-2 VPS16 Vacuolar protein sorting-associated protein 16 homolog 0 141.78 3.219e-08 111190000.0 39524.0 48536.0 48835.0 49926.0 52600.0 55523.0 48885.0 50043.0 52646.0 49310.0 False True 39311.207175529205 50151.4914193684 55710.543518570616 56246.62648097191 59298.298215374125 51684.825697083324 46520.24579116497 53777.46277320509 39672.098720257694 46162.99358358505 0.8515740450053428 1.0864003290549513 1.20682259086379 1.2184354201191248 1.2845418724417348 1.1196159885840196 1.0077389306855298 1.1649474741241141 0.8593918123707768 1.0 15.494449162635004 1.2439830030373278 24.992230511766106 0.9296958826735529 1.124846127986057 0.28232514089121163 0.1193199405355787 151.50394038968383 698319.1987968874 0.08735650496276108 0.029843556766823313 17.538118616464047 -1.2439830030373278 0.19515024531250424 RLEDLSESIVNDFAYMK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLEDLSESIVNDFAYMK 17 1 P49755 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 0 141.97 9.6867e-07 81376000.0 101430.0 160330.0 141230.0 149220.0 135530.0 142500.0 152540.0 117000.0 217640.0 149190.0 False True 100883.9121499325 165666.48712846843 161113.95640683384 168111.23670012882 152788.9421507537 132649.31040891833 145161.05744061174 125731.13411396185 164005.53822658653 139668.5664720149 0.7223093549123409 1.1861400980417642 1.1535448560583308 1.2036440334899041 1.0939393595148532 0.9497434802948092 1.0393251760745847 0.9002106722356481 1.174248024228472 1.0 17.091647841657803 2.760301757221182 22.763672412289054 1.0000053651957566 1.0901145909054628 0.029709657074409757 0.14346440207326797 682.8131918455737 714923.8801683511 0.042930786284418786 0.04547609770934473 575.8399044175023 -2.760301757221182 0.09010922570970625 RLEEALMADMLAHVEELAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEEALMADMLAHVEELAR 19 1 O95983-2;O95983;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 0 ; 168.78 9.9955e-12 86143000.0 97383.0 137242.0 112666.0 130313.0 127111.0 128886.0 139830.0 110372.0 147165.0 140065.0 False True 96858.70074826835 141810.0170054592 128528.39348957258 146810.6124387071 143297.83240407633 119976.4141850096 133065.8886975268 118608.51909765975 110898.15765996886 131125.93178432036 0.7386693038535221 1.0814795752125699 0.9801905064894388 1.1196153990362894 1.092826037185205 0.9149709180511312 1.0147946091730913 0.9045389991413018 0.8457378044975671 1.0 17.00059349910469 1.705999922236504 6.024337597745683 0.9063755202614513 1.000628814210401 0.08420995495040673 0.1087633607518635 0.2867797365814437 24.5967158380603 0.05390801066034849 0.027392070891150505 50.81593515710296 -1.705999922236504 0.09425329394894966 RLEEEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEEEADR 8 1 A0A669KAX4;Q13620-1;K4DI93;Q13620;Q13620-3 A0A669KAX4 CUL4B Cullin-4B 0 ; 117.3 0.0033762 311950000.0 161895.0 199870.0 184323.0 201404.0 187758.0 199076.0 212430.0 190401.0 218631.0 208089.0 False True 161023.37530822557 206522.55212603344 210274.0762357635 226901.72574958287 211667.86837114496 185314.34469449733 202153.94933859404 204609.68945668743 164752.3195553064 194808.58186604426 0.8265722883756202 1.0601306685146141 1.0793881574496227 1.1647419409151427 1.086542832680203 0.9512637632254033 1.0377055641090835 1.0503114775373843 0.8457138693643108 1.0 17.571697708031966 1.2608755473933355 24.99461264681807 0.922856900689936 1.0388769913871028 0.18049323595074618 0.09219029048323045 316.6619077347911 354689.6923651803 0.061192741752832645 0.022307040218892207 18.233731166922123 -1.2608755473933355 0.11602009069716679 RLEEEGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEEEGDR 8 1 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 ; 134.23 0.0014199999999999998 596890000.0 204019.0 261140.0 231070.0 241620.0 241660.0 227107.0 252020.0 206850.0 252560.0 249430.0 False True 202920.58437264164 269831.8870375367 263602.6475035554 272209.06722614303 272433.9685689602 211407.62764237385 239828.8297901076 222286.197363017 190319.97213061337 233511.1638522333 0.8689973576640238 1.1555416991038907 1.1288652891574988 1.1657218555871611 1.1666849844547793 0.905342700343669 1.0270550916438075 0.95192963666474 0.8150358594891357 1.0 17.83313199931498 2.7340706812413216 24.94094043493763 0.9454720300781809 1.1059756899005342 0.39299427372375906 0.09730849866570684 382.2606064109188 2123395.7549659694 0.030748588184769905 0.029927080040886764 542.0891079933901 -2.7340706812413216 0.16050365982235326 RLEEFEGER ddPTM_BT-474_Trastuzumab_2h_R1 3 RLEEFEGER 9 1 Q08378;Q08378-4;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 ;; 110.84 0.003563 797370000.0 496600.0 771220.0 716040.0 818350.0 718860.0 631880.0 603530.0 545620.0 664830.0 638540.0 False True 493926.3607774463 796889.5914876653 816852.2080687489 921953.0260926837 810402.5599829628 588199.6228855256 574334.948191506 586336.9350022202 500991.554765584 597787.8305184027 0.8262569687126491 1.3330642592650324 1.366458409433282 1.5422746650649684 1.3556692167523385 0.9839605171879089 0.9607672135002173 0.9808445489660566 0.8380758677056426 1.0 19.189274002049245 2.7055815854590173 6.812199232555432 0.9533931437318569 1.306344332332531 0.46863748730673527 0.17606280317898318 0.18714344959838966 29.501106634990347 0.058342432886234204 0.055763589557471634 507.6700996878432 -2.7055815854590173 0.3529511886006741 RLEELEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLEELEAK 8 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 96.668 0.014074 154490000.0 175650.0 207080.0 196290.0 210100.0 188170.0 213450.0 206350.0 182850.0 244740.0 211950.0 False True 174704.31991654975 213972.53261749638 223925.9258167344 236698.6384579615 212132.3341290292 198694.70390725342 196368.06216644953 196495.19549348665 184427.10634798213 198423.1695404758 0.8804633063827372 1.0783646542539918 1.128527108680503 1.192898183242043 1.069090543308537 1.0013684609887368 0.9896428054305066 0.9902835235852038 0.9294635640338431 1.0 17.598220971076344 2.684234067893842 3.4887445681927725 0.9804224190116628 1.0810563340743091 0.24694700909224232 0.07631887840951367 0.3449738681844979 8.5128972808366 0.02672918626352731 0.025731365058835158 483.3192221840934 -2.684234067893842 0.1006339150626463 RLEELER ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEELER 7 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6;A0A0D9SG62;G5E948;E7ENQ1;G3XAA2;C9J840;E7EX83;O95819-4;O95819-5;H7C3Z6;Q9NRD5;Q9NRD5-2;F6V107 O95819-3 MAP4K4;PICK1 Mitogen-activated protein kinase kinase kinase kinase 4;PRKCA-binding protein 0 ; 130.56 0.0056941000000000005 491850000.0 228460.0 315500.0 279520.0 309400.0 297750.0 310620.0 291180.0 241200.0 317340.0 303820.0 False True 227229.99674429212 326001.22677622264 318873.9863686062 348570.00827650295 335666.6975974835 289147.5705208299 277094.5109843802 259199.56878878284 239135.809138141 284429.94748661143 0.7988961737405946 1.146156477744201 1.1210984960844044 1.225503894216029 1.1801383805173464 1.016586238811722 0.9742100416392457 0.9112949289595597 0.8407546787927368 1.0 18.117713848029233 2.2862401818647737 2.2654117241635996 0.914952054007669 1.1048447397675503 0.30613074665889217 0.11461748518603289 0.3445417773462941 3.621964100678114 0.050820330983549065 0.03619764746076487 193.30370666965104 -2.2862401818647737 0.18989268575988127 RLEELLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLEELLR 7 1 P42285;H0YAC4 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 141.39 0.004105 137650000.0 68804.0 94151.0 90872.0 83681.0 72841.0 80378.0 83639.0 65627.0 106370.0 87765.0 False True 68433.56690884303 97284.75911951858 103665.98772641645 94275.00601999386 82116.86958756785 74821.65804945996 79593.06203799215 70524.41998715364 80156.53878497526 82163.7625606032 0.8328923210930986 1.1840348602312643 1.2616996166643832 1.1474037103699763 0.9994292742740359 0.9106406001583999 0.9687124780743223 0.8583397082763282 0.9755704496352948 1.0 16.32621462867431 3.0712925645830467 3.815243481307862 0.9312510821096087 1.1224349445583752 0.3220686209502064 0.1103779380471377 0.23565761343476146 6.8500421114333765 0.033434663412312736 0.04011654740622237 1178.3995407587022 -3.0712925645830467 0.1911838624487665 RLEEPEEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEEPEEPK 9 1 O75822;O75822-2 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 0 ; 111.73 0.0033299 883250000.0 946950.0 888940.0 814800.0 820380.0 738230.0 1043400.0 1005610.0 925150.0 1442590.0 999140.0 False True 941851.7264160364 918527.8305244225 929516.7576314406 924240.0238845432 832239.2146679786 971272.2138994058 956964.8024967469 994189.3908165107 1087083.0242156396 935374.0297932092 1.0069252474587724 0.981989879201039 0.9937380427773226 0.9880967339758968 0.8897394926091422 1.0383784271989387 1.023082501775585 1.0628789758427484 1.1621907275488181 1.0 19.83518384802083 2.079813321011252 1.7025756131362964 1.081511879265722 0.9766361870310523 0.4165711926412896 0.04997916000194997 0.3385943654269079 1.8644070086932214 0.028929576907643386 0.015374636542729745 120.17477592081322 -2.079813321011252 -0.10487569223466964 RLEEPSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLEEPSLR 8 1 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 ; 158.87 0.00058116 847970000.0 238580.0 303980.0 276460.0 307270.0 288570.0 269890.0 272700.0 261990.0 315970.0 307520.0 False True 237295.51178872964 314097.79054020945 315383.1649666029 346170.3504948974 325317.6790116064 251233.13955272263 259508.4591848358 281541.0241582638 238103.42728108176 287893.8103188819 0.8242466606902465 1.0910196026524608 1.0954843545169408 1.2024237343326911 1.1299919183787677 0.8726590518721034 0.9014033990428436 0.9779335785177824 0.8270529575378838 1.0 18.135177245907634 2.737412585485603 24.98190012513339 0.9185603315049735 1.0788014740368432 0.3572260749810219 0.10201038059987111 114.47626238797822 2491054.5714089344 0.03269355152213296 0.03245701602787958 546.2765846152447 -2.737412585485603 0.16024114253186972 RLEEQAAQHK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLEEQAAQHK 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 132.57 0.00014296 1710010000.0 1640380.0 1789410.0 1740340.0 1511830.0 1476110.0 1775280.0 1921880.0 1540230.0 2257690.0 1856680.0 False True 1631548.376343353 1848969.430128811 1985364.7446935445 1703227.5229885778 1664083.8589105674 1652559.0721596114 1828911.322105432 1655169.783729464 1701312.5509960584 1738185.0928162804 0.9386505402021655 1.063735638839839 1.14220559875863 0.9798884652893537 0.9573686172940011 0.9507382608385312 1.0521959540811348 0.9522402364225139 0.9787867575365753 1.0 20.729150286844728 3.578571930303895 24.8681745255794 0.9800089155620925 1.0516346750987717 0.24286571602083595 0.05372858812234847 48.49355130518963 11876.550539913032 0.0141638876737545 0.02194259909855938 3789.412909471062 -3.578571930303895 0.07162575953667927 RLEEWLGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLEEWLGR 8 1 P56192;P56192-2 P56192 MARS Methionine--tRNA ligase, cytoplasmic 0 ;; 182.76 0.00036371 2640560000.0 1392560.0 1836100.0 1675050.0 1741160.0 1727710.0 1567860.0 1648320.0 1524470.0 1911550.0 1690720.0 False True 1385062.6116879596 1897213.4785541124 1910882.4802043957 1961590.6774748443 1947723.6275605315 1459477.5285454514 1568584.4644061192 1638233.6925018083 1440474.115957692 1582816.8021017853 0.8750618579792478 1.198631121450598 1.2072669924068153 1.2393036735963974 1.230542678706844 0.9220760903014458 0.9910082217494992 1.0350115631363253 0.9100700182389524 1.0 20.59406285449361 2.7364086446607474 24.9986635865074 0.9804743823461534 1.1609789323032034 0.42128392120037494 0.10397903114478564 192.5381728872742 2236634.500787368 0.03322957852790564 0.03273498008339901 545.0152377986001 -2.7364086446607474 0.18050454995705 RLEIS(ph)PDS(ph)S(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 RLEISPDSSPER 12 1 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 3 RLEIS(1)PDS(1)S(1)PER 105.53 0.031272 141330000.0 144600.0 178600.0 134100.0 162120.0 163680.0 187770.0 172010.0 148390.0 197000.0 182040.0 True False 143821.48966657047 184544.5930340202 152980.11438190477 182644.37537746213 184523.67779263208 174789.9018630359 163689.21915798882 159463.61530915223 148451.98966475634 170422.05134771482 0.8439136163965613 1.082868041867956 0.8976544594559364 1.0717179727217923 1.0827453157229372 1.025629608849205 0.9604931865537231 0.9356982505966677 0.8710843960085153 1.0 17.378752496102074 -1.0754891014281944 5.399333443604265 1.0000002106293329 0.9793337597072136 0.005327897771670975 0.08430807722830584 2.0840247832345992e-07 3.569113083051049e-08 0.07958341181727752 0.01875779900636555 0.0840448097787007 1.0754891014281944 -0.020666450922119273 RLEIS(ph)PDSS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 4 RLEISPDSSPER 12 1 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 2 RLEIS(0.999)PDS(0.438)S(0.563)PER;RLEIS(0.999)PDS(0.43)S(0.571)PER;RLEIS(0.999)PDS(0.074)S(0.926)PER;RLEIS(0.999)PDS(0.065)S(0.936)PER 138.05 5.437e-05 2368920000.0 2349350.0 2864320.0 2243010.0 2917440.0 2771400.0 2936880.0 2723560.0 2544810.0 3131250.0 2874540.0 True False 2336701.360637323 2959657.1596819963 2558806.311407578 3286787.604868134 3124321.3626252413 2733860.398271893 2591810.99779043 2734716.644483345 2359595.394100348 2691084.3961824873 0.8683121807521592 1.0998009441400278 0.950845805890534 1.2213617713107394 1.1609897359805343 1.015895451718306 0.9631102619699018 1.0162136305954408 0.8768195443619746 1.0 21.3597562059527 2.4831262979302395 13.504565006038115 0.9730848234042351 1.0676416685638968 0.16834207931785983 0.09934912799095733 1.3222105227366747 2966.851821361082 0.03375562622447442 0.02956031313164032 304.1769479314237 -2.4831262979302395 0.09455684515966167 RLEQTSVRDPS(ph)PEADAPVLGSPEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLEQTSVRDPSPEADAPVLGSPEK 24 2 O15234 O15234 CASC3 Protein CASC3 1 RLEQT(0.001)S(0.004)VRDPS(0.996)PEADAPVLGSPEK;RLEQT(0.001)S(0.009)VRDPS(0.99)PEADAPVLGSPEK;RLEQT(0.028)S(0.028)VRDPS(0.945)PEADAPVLGSPEK 200.52 7.9425e-25 637920000.0 331148.0 323062.0 282765.0 269003.0 302223.0 347021.0 320997.0 324060.0 437817.0 371940.0 True False 329365.1359620013 333814.9233748968 322575.8541625602 303058.75221850094 340709.30763393576 323032.25506956666 305469.14878237905 348243.00274333765 329922.8667972317 348202.47076614527 0.9459012029331773 0.9586805132094791 0.9264031167062107 0.8703521016139971 0.9784804423824954 0.9277138509637887 0.877274500982889 1.0001164034738272 0.9475029458329426 1.0 18.409566914500548 1.6782634570457466 10.625549865274303 0.9799232546110579 0.9276060199556269 0.3619769454698756 0.03403033280499278 0.13439173302185856 21.249820961547215 0.015987518616836918 0.00865756020676978 47.672009289629564 -1.6782634570457466 -0.05231723465543103 RLESSGAGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RLESSGAGGR 10 1 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 0 ;;; 134.13 0.00028671 130094000.0 79218.0 108556.0 96864.0 110592.0 109800.0 78888.0 97967.0 100392.0 92512.0 99497.0 False True 78791.49908994716 112169.22083651213 110501.60924301893 124592.9358607469 123782.3791644122 73434.65824237718 93227.9619397169 107883.76082024656 69713.65719728908 93147.01627633268 0.8458832310441591 1.2042170036208957 1.1863139975971062 1.337594491391177 1.3288925841402772 0.7883737040435493 1.000869009729137 1.1582095179538057 0.7484260901119419 1.0 16.50722193645355 2.7457886150083266 24.99707094394536 0.9713590139114147 1.1909349622428667 0.33362263307164186 0.16720849178422797 759.5633469394592 2626848.212082235 0.05302622222026106 0.05518422057876731 556.9146148267542 -2.7457886150083266 0.219575948331452 RLFT(ph)ELCHPPRHMTQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLFTELCHPPRHMTQK 16 2 Q8IZQ1-2;Q8IZQ1;D6RJE4 Q8IZQ1-2 WDFY3 WD repeat and FYVE domain-containing protein 3 1 RLFT(0.994)ELCHPPRHMT(0.006)QK 76.768 0.034615 315630000.0 131810.0 159910.0 148020.0 157050.0 161420.0 159700.0 146940.0 139600.0 129600.0 188330.0 True False 131100.34960546784 165232.5076823636 168859.92938709597 176932.51389730064 181975.88018870135 148660.3148933634 139831.95083468923 150017.66087443643 97661.81655102746 176310.61816257492 0.7435760305972101 0.9371670827562055 0.9577411227234839 1.0035272732930485 1.0321322792987007 0.8431727847286239 0.7930999975608449 0.8508713907185448 0.5539190864895845 1.0 17.42775983683853 2.522078115247257 6.52333242865072 0.7966734093351449 0.9402991501489665 0.2111327468378441 0.12437484343574667 0.3211268753220074 35.794659937677054 0.039849061644462766 0.03690631109530669 332.7193931526109 -2.522078115247257 0.14362574081382162 RLGLPGDEVDNK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLGLPGDEVDNK 12 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 87.241 0.012261 0.0 287100.0 288920.0 291520.0 278370.0 280900.0 367080.0 348820.0 287490.0 475400.0 350640.0 False True 285554.2854998084 298536.5275441719 332563.48206273606 313611.61345808086 316670.94997525867 341704.6236133742 331946.2439781972 308943.96364464035 358244.04003363027 328261.85500199255 0.8698978609563852 0.909446294155499 1.0131042550183524 0.9553702590761795 0.9646900641968786 1.0409513576023022 1.0112239327234116 0.9411509712048787 1.0913361835217064 1.0 18.32448758865854 6.345466760670501 0.5846765969833074 1.0048411404016218 1.0960473988572638e-19 0.5299074142006553 0.04228272018327323 16.980650609986732 0.9875660641870558 0.018595524856984312 17.396137770005005 2215474.52541341 -6.345466760670501 -1.0048411404016218 RLGSLVDEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLGSLVDEFK 10 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 144.1 5.2588e-05 352780000.0 995700.0 1062920.0 913970.0 989250.0 995370.0 1072430.0 1196680.0 1054600.0 1626530.0 1223120.0 False True 990339.2618326705 1098298.6496512906 1042649.0316303477 1114488.9485699115 1122124.4694797893 998295.4383286769 1138792.0166384643 1133299.6071502923 1225693.4758853624 1145059.4344342845 0.8648802254722671 0.95916300641102 0.9105632426368047 0.9733022715283978 0.9799705026090404 0.8718284905637966 0.9945265567818176 0.9897299415817642 1.0704190883252407 1.0 20.12699105283263 1.811598137465847 2.077181632227411 1.0290655105915432 0.9325841697915344 0.4891116637983647 0.042700879649135805 0.2593497876842671 2.15711201214972 0.026405304734136943 0.011822837059472563 64.80345149974013 -1.811598137465847 -0.09648134080000881 RLHPPS(ph)PVPQGVCPAHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLHPPSPVPQGVCPAHR 17 1 Q96F44-3;Q96F44;Q96F44-2 Q96F44-3 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 RLHPPS(1)PVPQGVCPAHR;RLHPPS(1)PVPQGVCPAHR 93.804 0.0013973 299590000.0 135394.0 175639.0 162430.0 201493.0 185762.0 165851.0 180127.0 150481.0 202474.0 175092.0 True False 134665.05374768766 181485.03793898225 185298.7321331304 227001.9931404573 209417.68960236374 154386.11074125985 171413.56885803756 161710.65634703485 152576.9957125985 163917.47865619694 0.8215417590099482 1.1071731912106322 1.1304391310323827 1.3848553247733564 1.277579983045003 0.9418526444337988 1.045730877898403 0.9865369921057002 0.9308159017783323 1.0 17.322610172840918 2.7208186811951616 24.6656164370985 0.9860971064069595 1.1548464413174686 0.25713949686250925 0.1380910388654706 1029.3958726700437 1431108.9456396012 0.04755129047700886 0.04493027355125373 525.7976989801025 -2.7208186811951616 0.16874933491050914 RLIELYK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLIELYK 7 1 P37837;F2Z393 P37837 TALDO1 Transaldolase 0 ; 131.06 0.0056162 879750000.0 766030.0 859170.0 800860.0 637970.0 525620.0 781400.0 820960.0 712390.0 1429900.0 899080.0 False True 761905.7795939345 887766.9540707682 913614.126800092 718736.9365874616 592554.5914061783 727383.6572177457 781247.0284282459 765552.1592431222 1077520.30467835 841699.9446588866 0.9051987996776095 1.054730916526971 1.0854392145295315 0.8539111130377253 0.7039974223193293 0.8641840383065849 0.9281775927226177 0.9095309606481861 1.2801715284833879 1.0 19.68294649691726 -0.23945071146271113 6.930673672982994 1.0000000025045623 0.9440105911418465 0.004633170088583216 0.14842763262929645 0.0 0.0 0.14549553660416176 0.03429362685505945 0.5761682047846489 0.23945071146271113 -0.055989411362715846 RLKS(ph)DERPVHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLKSDERPVHIK 12 3 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 RLKS(1)DERPVHIK;RLKS(1)DERPVHIK 135.47 9.078e-05 1220300000.0 678970.0 625690.0 525020.0 602820.0 583550.0 747280.0 814890.0 679910.0 1194210.0 751790.0 True False 675314.5009606594 646515.7134124073 598938.2524443533 679136.9501914729 657861.6335281661 695622.2925079057 775470.6575178978 730648.3367130235 899912.947094156 703810.1185601993 0.9595123502091245 0.9185939451041135 0.850994091516637 0.9649434304536558 0.9347146569503276 0.9883664274832485 1.1018180004349698 1.038132754055494 1.2786303057636184 1.0 19.424826730058466 2.367688776380771 1.3084172080199512 1.1165206915413188 0.9169534542779295 0.5640531707705521 0.07394464773951921 0.3118839567061224 1.0648226607473783 0.04009241630682054 0.026282248771717764 233.17864612319897 -2.367688776380771 -0.19956723726338932 RLKS(ph)EDELRPEVDEHTQK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLKSEDELRPEVDEHTQK 18 3 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;H0YCR2;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 RLKS(1)EDELRPEVDEHTQK;RLKS(1)EDELRPEVDEHTQK;RLKS(1)EDELRPEVDEHTQK 206.49 6.0465999999999985e-16 2113900000.0 2211010.0 1654060.0 1506690.0 1550300.0 1466810.0 2229320.0 2220880.0 2066580.0 3975510.0 2339540.0 True False 2199106.1678263033 1709114.3871996172 1718818.8556157507 1746567.82104416 1653599.5590359864 2075212.355654807 2113447.549814515 2220798.6934806113 2995798.829604748 2190228.5542190326 1.0040532818322405 0.7803360904538268 0.7847668921605435 0.7974363304138968 0.7549894990870524 0.9474866683010456 0.9649438391912959 1.0139575110564107 1.3678019236092722 1.0 21.062649994782408 1.8662152411310424 1.3936506285075954 1.1646472313823524 0.8263767601442289 0.5627478095047209 0.11471953642839354 0.2857107839976212 1.0368514888353306 0.0829614336376471 0.035326203547992076 73.4877991548653 -1.8662152411310424 -0.3382704712381235 RLLAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLLAEK 6 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;B5MCA1;Q96G28;Q96G28-2;P02545-2;Q3BDU5;Q5TCI8;A0A3B3ISJ8 P02545;P02545-2;A0A3B3ISJ8 LMNA;CFAP36 Prelamin-A/C;Lamin-A/C;Cilia- and flagella-associated protein 36 0 ; 107.43 0.050146 2155700000.0 3537800.0 4122200.0 3744100.0 3273200.0 2373800.0 3343500.0 3768100.0 3110900.0 6030400.0 3880700.0 False True 3518752.8778865337 4259404.935077475 4271236.735699407 3687586.7843912416 2676089.3593850755 3112371.714752414 3585822.6074601365 3343051.154830118 4544288.723220032 3633030.4035655786 0.9685448474180428 1.1724110348476995 1.175667765264907 1.0150167696840962 0.7365997699217356 0.8566874947420828 0.9870059452133649 0.9201825428020461 1.2508259547622045 1.0 21.792742008540205 3.4819494079817876 24.92561964653709 0.9434656066217341 1.1094138973514278 0.1898221848876459 0.1336527598142509 288.4892733818309 1489343.5396248396 0.03714916830371099 0.05168322578377659 3033.5377794319793 -3.4819494079817876 0.16594829072969375 RLLDQIVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLLDQIVEK 9 1 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4;C9JSZ1 FUBP1 Far upstream element-binding protein 1 0 ; 99.973 0.0079765 1082360000.0 683960.0 1237770.0 1344700.0 1215750.0 842720.0 897840.0 997180.0 688730.0 1051090.0 896950.0 False True 680277.6353550991 1278968.4262022348 1534022.0716580723 1369663.8253463432 950035.3968072259 835774.4340880242 948942.5938024737 740126.5299000764 792062.9533844112 839705.8830824703 0.8101379888609007 1.5231147619298304 1.8268564059916332 1.6311232932160176 1.131390664216556 0.9953180642488604 1.130089252583306 0.8814116285373056 0.9432623604789251 1.0 19.679524569802716 3.080894839372723 4.788136751424088 0.992198738609113 1.4780470192517448 0.4243460282434558 0.2507784420459794 0.19771595754024554 8.204839934044223 0.07656335945605007 0.09199494788464978 1204.7441867356274 -3.080894839372723 0.48584828064263175 RLLEDGEDFNLGDALDSSNSMQTIQK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLLEDGEDFNLGDALDSSNSMQTIQK 26 1 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;; 336.05 5.9020999999999985e-95 1057390000.0 484420.0 657380.0 613750.0 742780.0 699310.0 773560.0 842410.0 664200.0 1120530.0 892590.0 False True 481811.93654412206 679260.495905399 700160.6651893663 836815.87184105 788362.9833648902 720085.6179643722 801659.409981288 713765.9767392604 844390.3958327386 835624.1420152537 0.576589296932169 0.8128780174627837 0.8378894648744907 1.0014261553321357 0.9434420856530247 0.861733860665825 0.9593540560567653 0.8541710810531263 1.0104906660503412 1.0 19.672494648343207 4.916790362296415 1.2128303799652527 0.9322035987357148 0.29961915932301303 0.793789548299035 0.05662578316900649 0.9235454344329116 0.8773971892517552 0.015565459061037321 0.8106735678475162 82563.9310133789 -4.916790362296415 -0.6325844394127018 RLNHS(ph)PPQSSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 RLNHSPPQSSSR 12 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 RLNHS(0.986)PPQS(0.013)S(0.001)SR;RLNHS(0.882)PPQS(0.11)S(0.008)SR;RLNHS(0.985)PPQS(0.007)S(0.007)S(0.002)R;RLNHS(0.973)PPQS(0.02)S(0.006)S(0.001)R;RLNHS(0.983)PPQS(0.003)S(0.013)SR;RLNHS(0.992)PPQS(0.004)S(0.004)SR 111.34 0.00085257 4755300000.0 248293.1 324617.0 304868.0 332727.0 303816.0 276068.0 337001.0 258405.0 353609.0 325277.0 True False 246956.31753755687 335421.6806098796 347790.7644398404 374850.2040847318 342505.1667414847 256984.06895417036 320698.97416116163 277688.4932540029 266466.80006784166 304517.54337634926 0.8109756659646593 1.1014855725252464 1.142104197294178 1.2309642325646222 1.1247469125881757 0.8439056289002276 1.0531379263256895 0.9118965369782039 0.8750458088994854 1.0 18.216165819195655 2.7543631343964945 24.788366743370823 0.9395225493469693 1.0947435491545905 0.2808771892883548 0.11528139632945905 939.1695861478802 1473211.786387255 0.03577919814685942 0.03783277136146685 568.0193550618632 -2.7543631343964945 0.15522099980762116 RLNKHEENLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNKHEENLK 10 2 P42766 P42766 RPL35 60S ribosomal protein L35 0 62.303 0.05163 200610000.0 209420.0 229270.0 278770.0 179000.0 130430.0 189390.0 258990.0 159040.0 553320.0 242940.0 False True 208292.5059887494 236901.11335335817 318018.3928877224 201661.3816467165 147039.48738082228 176297.91507610548 246461.66426212157 170908.3723887563 416961.7001081375 227435.36120860188 0.9158316669926503 1.0416195269480297 1.3982803342354424 0.8866755836694818 0.6465111080328395 0.775156132886506 1.0836558701884045 0.7514591024040476 1.833319576570609 1.0 17.7950970535315 -0.4306654813208701 7.132065036231836 1.0000124967610202 1.0069416931347208 0.0 0.33388696234786774 0.0 0.0 0.3109132834507095 0.07328296369632398 0.37096635146173845 0.4306654813208701 0.006929196373700597 RLNLEEWILEQLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLNLEEWILEQLTR 14 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 0 ; 256.52 4.1261e-24 621210000.0 202338.0 304720.0 294320.0 382130.0 318330.0 295050.0 312690.0 238068.0 340440.0 307050.0 False True 201248.63468986534 314862.4209928698 335757.69772469974 430507.61881932855 358867.43861026707 274653.88797299226 297563.9901082003 255833.84304480912 256543.12366228283 287453.8061212691 0.7001077404588752 1.095349632838181 1.168040535817614 1.4976584399015014 1.2484351606006234 0.9554713909654169 1.035171508505495 0.8899998455295444 0.8924673050043181 1.0 18.132970607765813 2.7196906145058874 21.948366706639266 0.9498380490717915 1.1605456941723098 0.19501193282176166 0.18825014018282912 275.25814805392145 320160.46443762915 0.06481649372504661 0.0612652986561031 524.4337276752551 -2.7196906145058874 0.21070764510051831 RLNNLS(ph)PAPHLAS(ph)GSPPPGLPSGLPSGLQSGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 3 RLNNLS(0.953)PAPHLAS(0.523)GS(0.523)PPPGLPSGLPSGLQS(0.039)GS(0.916)PS(0.046)R 170.87 2.8158e-15 169160000.0 73091.0 107440.0 91929.0 122240.0 103140.0 114100.0 120790.0 125480.0 131830.0 114750.0 True False 72697.48617717359 111016.0754511485 104871.80413880784 137715.57146645046 116274.26764132497 106212.53556250954 114946.92623739006 134843.95477452935 99342.26293149673 107426.55675758231 0.6767180143474393 1.0334136995721297 0.976218612083607 1.2819509032316658 1.0823605554416895 0.9886990588573706 1.0700047521468843 1.2552199274041416 0.9247458536316256 1.0 16.712991158322417 5.074602078722209 1.4884226759838575 1.0969702469478924 0.13227570425964616 0.522759379031478 0.11137743213789568 2.061282638079477 2.1911819161212334 0.02935034135470569 3.7294372892539607 118741.3763847875 -5.074602078722209 -0.9646945426882462 RLNNLSPAPHLAS(ph)GS(ph)PPPGLPSGLPSGLQSGSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 RLNNLS(0.3)PAPHLAS(0.758)GS(0.624)PPPGLPS(0.046)GLPS(0.236)GLQS(0.037)GSPSR 129.34 3.3703e-08 845070000.0 66798.0 78866.0 90845.0 104450.0 90338.0 93115.0 89497.0 82298.0 111280.0 96129.0 True False 66438.36698995542 81491.00713449619 103635.18636110477 117673.35929050008 101842.00882472367 86678.17921913294 85167.68819825893 88439.49466077625 83856.53507560461 89993.96491982252 0.7382535823279565 0.9055163555367097 1.1515792914939962 1.3075694508552624 1.1316537605100165 0.9631554659954845 0.9463711069307433 0.982726949963465 0.9318017619327488 1.0 16.457540635745325 -0.4449288131317779 7.641469845400325 0.9999999992392298 1.0142147648982127 0.0 0.14888956329824524 0.0 0.0 0.15479823067488913 0.03648629287529785 0.35898077173293785 0.4449288131317779 0.014214765658982942 RLNNLSPAPHLAS(ph)GSPPPGLPSGLPSGLQSGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 RLNNLS(0.035)PAPHLAS(0.716)GS(0.249)PPPGLPSGLPSGLQS(0.106)GS(0.892)PS(0.002)R 195.51 2.3975999999999997e-27 799310000.0 245830.0 309540.0 376850.0 441060.0 409770.0 367040.0 412030.0 390970.0 465720.0 438130.0 True False 244506.47859428092 319842.8517791185 429907.2043610806 496898.15077709995 461951.78060292517 341667.3887192241 392098.53479254787 420146.1667054325 350949.5463282755 410168.1682980353 0.5961127593319682 0.7797846749207392 1.0481242514380165 1.21144981298511 1.1262497100147055 0.8329934283709765 0.9559457927209073 1.0243266035216732 0.8556235550518624 1.0 18.645856008135368 4.438719793888026 3.2716135926501333 1.0105560517718848 0.616590841024477 0.6045396937287896 0.10772247346794045 0.16713721261833014 3.509796574258519 0.028886599040557227 0.11538178345547795 27461.217879714615 -4.438719793888026 -0.39396521074740776 RLNNLSPAPHLASGS(ph)PPPGLPSGLPSGLQS(ph)GSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 RLNNLS(0.05)PAPHLAS(0.151)GS(0.799)PPPGLPS(0.184)GLPS(0.039)GLQS(0.776)GS(0.001)PSR 193.97 3.856300000000001e-21 380680000.0 105640.0 131230.0 120600.0 169180.0 195800.0 118010.0 148950.0 127030.0 172010.0 145340.0 True False 105071.2459777074 135597.9112197898 137579.4317260084 190598.1706535839 220733.96940247633 109852.2464656595 141744.71945574338 136509.62364526984 129620.44031591238 136064.2767681656 0.7722177229276279 0.9965724614906053 1.0111355823426336 1.400795088767762 1.6222771666848013 0.8073555313334173 1.0417482297521519 1.0032730624649042 0.9526412324725568 1.0 17.053928816118166 RLNNLSPAPHLASGS(ph)PPPGLPSGLPSGLQSGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 2 RLNNLS(0.015)PAPHLAS(0.185)GS(0.8)PPPGLPSGLPS(0.007)GLQS(0.034)GS(0.813)PS(0.145)R;RLNNLS(0.001)PAPHLAS(0.202)GS(0.797)PPPGLPS(0.125)GLPS(0.064)GLQS(0.13)GS(0.37)PS(0.312)R;RLNNLS(0.266)PAPHLAS(0.349)GS(0.378)PPPGLPS(0.006)GLPS(0.002)GLQS(0.179)GS(0.686)PS(0.134)R 127.68 3.9299e-08 1467660000.0 159011.0 199362.0 211680.0 224317.0 234622.0 235155.0 241767.0 200934.0 243625.0 227564.0 True False 158154.90244378278 205997.64365312614 241482.70404445656 252715.50920025975 264499.7209864543 218899.2883453279 230071.80657037103 215928.71540217762 183586.8831577475 213040.6706926579 0.742369529393494 0.9669404578166563 1.133505181237579 1.186231288038135 1.241545664151769 1.027499996285319 1.0799431198857001 1.0135563068785403 0.8617457059295417 1.0 17.700769349984235 -0.33852291346379987 6.08559426629844 0.9999999973275526 1.0408205495670602 0.0 0.14109419758871666 0.0 0.0 0.14087489977235215 0.03320453233574519 0.45864544693424925 0.33852291346379987 0.040820552239507535 RLNNLSPAPHLASGSPPPGLPSGLPS(ph)GLQSGSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 RLNNLSPAPHLASGSPPPGLPS(0.081)GLPS(0.258)GLQS(0.221)GS(0.221)PS(0.221)R 56.006 0.027086 842220000.0 38725.0 45692.0 33226.0 44896.0 30966.0 38234.0 40267.0 41766.0 62960.0 51717.0 True False 38516.50890275199 47212.83059860273 37903.93199443082 50579.8289967094 34909.3365501383 35590.97357315497 38319.13137512204 44882.791003450686 47444.35162077697 48416.376782848674 0.7955264615421682 0.9751417544182635 0.7828741949120438 1.0446843063776536 0.721023316278074 0.7351019621477117 0.79144979284564 0.9270167242120078 0.9799236286013033 1.0 15.563207499510032 1.5190157793953836 3.6640648346757465 0.9841808618542547 0.8386123759581708 0.2993135441299928 0.09661697723249298 0.26541786508248233 7.685748939128153 0.06487863951528527 0.02547581123040464 33.03815447037566 -1.5190157793953836 -0.14556848589608384 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSR 35 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 RLNNLSPAPHLASGSPPPGLPSGLPSGLQS(0.047)GS(0.788)PS(0.165)R 167.17 4.586699999999999e-15 2204600000.0 248910.0 314350.0 305760.0 354070.0 341420.0 364910.0 360570.0 324470.0 400340.0 382450.0 True False 247569.89621650064 324812.9497214121 348808.35028643697 398895.2256963846 384897.8132451148 339684.6306057435 343127.8515888381 348683.599025275 301681.5712811606 358041.713568082 0.6914554557046744 0.9071930376057944 0.9742114872883678 1.1141026606122928 1.075008298361096 0.9487292059369281 0.9583460211084929 0.9738630606765108 0.8425877763647657 1.0 18.44976815257452 4.710899701227606 2.2639439815097977 0.9887143951816879 0.6276268241852283 0.6237882397998298 0.06898000666003898 0.3848477292978964 2.4175236348210194 0.018501282787705797 0.27057009510685753 51392.4948729283 -4.710899701227606 -0.3610875709964596 RLNS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLNSSPR 7 1 Q9UBS0 Q9UBS0 RPS6KB2 Ribosomal protein S6 kinase beta-2 1 RLNS(0.5)S(0.5)PR 55.604 0.067301 0.0 23475.0 38359.0 35279.0 35647.0 25664.0 20229.0 22934.0 19610.0 25154.0 31235.0 True False 23348.613208317693 39635.75612649483 40245.976549434934 40159.906545030746 28932.158277554387 18830.616843943946 21824.59480361209 21073.39777756232 18955.133746331394 29241.55555837111 0.798473705056829 1.355459905249402 1.376328166574351 1.3733847525609488 0.989419260538342 0.6439676851785411 0.7463554652571917 0.7206660991579685 0.6482259026368733 1.0 14.835732439699399 2.9933029587050903 4.137478597101296 0.7363997062454898 1.2438719636576323 0.597773710432197 0.18259300505581086 0.13276655041712776 5.350285627016844 0.05462373190587427 0.06228806364226351 984.6977797753431 -2.9933029587050903 0.5074722574121425 RLPDAHSDYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 RLPDAHSDYAR 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 ;;; 155.24 2.0529e-05 4352390000.0 473593.0 635180.0 638020.0 615260.0 542020.0 514290.0 572060.0 465833.0 742498.0 563010.0 False True 471043.22790912923 656321.5823255818 727847.6702307456 693151.8529159717 611043.0341957613 478738.3428084402 544387.2723185808 500595.82391204475 559519.316863464 527078.2197828885 0.8936875215658864 1.2452071774013553 1.3809101626900027 1.3150834675003102 1.1593023791562838 0.908287090681986 1.032839627755482 0.9497562318515983 1.0615489235998756 1.0 19.007657551895207 2.9034665559473547 5.07513076625416 0.9889647416836526 1.2252736382171272 0.40764390996208344 0.12584824762572971 0.21567148220812887 8.784430892048805 0.03963137438882934 0.04248886643796202 800.6939664700317 -2.9034665559473547 0.23630889653347464 RLPEESGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLPEESGGR 9 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 102.52 0.0057253 118650000.0 99622.0 124730.0 139190.0 140700.0 103940.0 113950.0 100130.0 125830.0 127510.0 120940.0 False True 99085.64622104482 128881.5626491228 158786.74213883159 158512.60557370394 117176.14289935332 106072.90470944728 95286.32936625447 135220.07355179344 96086.86904646241 113221.5056580566 0.8751486358103744 1.1383134493756122 1.402443300996083 1.400022059876436 1.0349283223033636 0.936861809891497 0.8415921411081685 1.194296726278975 0.8486627031498505 1.0 16.788788488785436 3.0235453762592406 23.26371119990644 0.9842079963030134 1.2139683664982317 0.31420698725189544 0.1661328943967849 137.74172194586754 136091.81840239698 0.05057370925129033 0.060442179671639104 1055.7118010711156 -3.0235453762592406 0.22976037019521833 RLPQDHADSCVVS(ph)S(ph)DDEELSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLPQDHADSCVVSSDDEELSR 21 1 D6RA71;P78317 D6RA71 RNF4 E3 ubiquitin-protein ligase RNF4 2 RLPQDHADS(0.006)CVVS(0.996)S(0.998)DDEELSR 85.185 0.010276 500380000.0 407450.0 564300.0 472870.0 492340.0 502400.0 463090.0 466720.0 475640.0 411610.0 473040.0 True False 405256.3344719512 583082.3843734461 539445.9857402779 554670.1935192427 566377.6620419002 431077.67829660414 444142.9705564596 511134.67205098114 310174.23079142347 442850.182210081 0.915109332121047 1.3166583368296803 1.218122984726183 1.2525007684339533 1.2789374031988536 0.9734165088185688 1.002919245375325 1.1541932070573409 0.7004044330375409 1.0 18.756459186898528 2.7298535586999804 24.54821837083183 0.993481213967632 1.2072926986601928 0.3711555212212372 0.14726931486691824 577.199297896878 1627321.729341362 0.04621298049917985 0.04420142368923055 536.8507432366863 -2.7298535586999804 0.21381148469256084 RLQEETGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLQEETGAK 9 1 Q07666-2;Q07666;Q5VWX1 Q07666-2 KHDRBS1;KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2 0 115.57 0.0023313 232340000.0 204080.0 216610.0 212420.0 195820.0 192070.0 224780.0 223300.0 193600.0 264040.0 227260.0 False True 202981.25595541956 223819.73290648966 242326.88961226118 220610.79192212308 216528.9760119184 209241.48767520458 212498.1259111617 208047.4150808805 198970.8799547322 212756.0722329253 0.9540562289249057 1.0520016211873466 1.1389892991959438 1.0369188978098751 1.017733471667321 0.9834806850829951 0.9987875959588068 0.9778682831346418 0.9352065859577391 1.0 17.698840782636243 2.9649808912154163 2.096129543943906 0.9783639641987958 1.0527235861944158 0.32752012463251967 0.044818157091393106 0.36927344597275163 3.2473142321908224 0.015629269772391093 0.01792108861097652 922.5308352716849 -2.9649808912154163 0.07435962199561996 RLQGQLQGGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 RLQGQLQGGSR 11 1 Q9UP83-3;Q9UP83;Q9UP83-2;U3KQU7 Q9UP83-3 COG5 Conserved oligomeric Golgi complex subunit 5 1 RLQGQLQGGS(1)R;RLQGQLQGGS(1)R;RLQGQLQGGS(1)R 137.81 4.3298999999999986e-05 242481000.0 115479.0 138900.0 135524.0 152152.0 133883.0 132831.0 132432.0 114329.0 145763.0 144152.0 True False 114857.27389492304 143523.20253317687 154604.60120427507 171414.42759950386 150932.2064632876 123648.70562054063 126025.75822063116 122860.81053089858 109841.6617741314 134952.09594526363 0.8510966286993348 1.0635122154115313 1.1456257875904532 1.2701872201305366 1.1184132073391841 0.9162414614938056 0.9338555087854806 0.910403129868622 0.8139307582053635 1.0 17.042087857957814 2.734109417163922 22.761974639400865 0.9111157254306319 1.101435032724682 0.40179312144116364 0.10616734544484893 110.73305350099773 566249.3420472885 0.03550622267533999 0.03461154048742417 542.137460572301 -2.734109417163922 0.1903193072940501 RLQQQQRPEDAEDGAEGGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLQQQQRPEDAEDGAEGGGK 20 2 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;;; 174.02 2.2631e-12 843250000.0 659170.0 579340.0 582460.0 576650.0 592500.0 747020.0 703300.0 658100.0 892270.0 735460.0 False True 655621.1019606714 598622.9816815741 664465.3051669226 649653.8308747433 667951.3629773606 695380.2656959323 669278.6921330945 707210.7637640873 672382.0143054434 688522.3131410154 0.952214749540578 0.8694314915527959 0.965059944296728 0.943547970015735 0.9701230450037113 1.009960392603155 0.9720508389624556 1.0271428394786741 0.9765580598805281 1.0 19.393143883388586 3.3885207995827424 1.0189460953251663 1.0010098963901246 0.9148380778459239 0.557528384175846 0.027381466057207007 0.35563273033112835 0.7726853463678967 0.010285111933500984 0.0201564970596178 2446.3624364149982 -3.3885207995827424 -0.08617181854420075 RLQSIGTENTEENR ddPTM_BT-474_Trastuzumab_2h_R1 8 RLQSIGTENTEENR 14 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;;;;; 322.07 4.5838e-56 21097240000.0 3513270.0 3620390.0 3546580.0 3249980.0 3091760.0 3989700.0 3931560.0 3279460.0 3767710.0 3700830.0 False True 3494354.944680993 3740892.4925780282 4045907.636574017 3661427.1347720423 3485477.309702758 3713901.429743596 3741375.422782293 3524189.9579604585 2839208.355227405 3464639.860960027 1.0085766731647345 1.0797348765540824 1.1677714853320784 1.05679876746482 1.006014318826476 1.07194443832165 1.0798742648378998 1.0171879616324482 0.8194815245359097 1.0 21.724273965608745 1.439828948968877 5.137856220901961 0.9089158795355287 1.0674018183731413 0.5285029660328617 0.05859979443562101 0.1370480824520981 6.9385206554239005 0.0379038798730488 0.01451043731202495 27.5314413764564 -1.439828948968877 0.15848593883761264 RLQSIGTENTEENRR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLQSIGTENTEENRR 15 2 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;; 245.96 2.1821e-18 1227975000.0 158627.0 270893.0 245948.0 314106.0 270493.0 316367.0 332150.0 173763.0 249855.0 281772.0 False True 157772.9698571166 279909.5097467236 280575.3405816608 353871.7873939858 304938.6802123801 294497.29393781244 316082.6355637815 186730.07741063533 188281.58313547046 263789.06972285383 0.5981027569598638 1.0611110992612638 1.0636352024609785 1.3414952627331225 1.1559943728250737 1.1164120418151584 1.198240078316623 0.707876477243051 0.7137580921502388 1.0 18.009025261227443 1.7261156280982601 9.26155387524707 0.7871383227161965 1.0900313594245703 0.2815367066815203 0.19517261288843765 0.12062655628140317 32.94609331722029 0.09434867004908638 0.05073652539886015 53.22499485120348 -1.7261156280982601 0.30289303670837375 RLQVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLQVLK 6 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33;Q9NY33-2 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 91.584 0.076526 447570000.0 451300.0 541340.0 458860.0 430480.0 404640.0 530390.0 472630.0 430370.0 674140.0 522950.0 False True 448870.2509441438 559358.1746530593 523463.4995173821 484978.72386189085 456168.50551081763 493725.3877037636 449767.0812780672 462486.3947745786 508007.2300131921 489574.88327998004 0.9168571882954258 1.142538544676875 1.0692204959747122 0.9906119378770076 0.9317645187486919 1.0084777723807574 0.9186890435734478 0.944669366361448 1.0376496984684382 1.0 18.901170019606052 3.596462397630698 4.573505939025424 0.9665325671149657 1.0521438029724675 0.18865296670722642 0.06225712570985026 0.28841942062078096 9.491096439804695 0.01610065570848921 0.025338770612736036 3948.7750832574475 -3.596462397630698 0.08561123585750174 RLREEFSFIPSAALDLLDHMLTLDPSK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLREEFSFIPSAALDLLDHMLTLDPSK 27 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 0 ;; 56.95 0.039705 3174620000.0 987142.0 1588010.0 1598560.0 1715990.0 1490760.0 1930300.0 2225300.0 1538200.0 2035570.0 2174710.0 False True 981827.3371537864 1640865.9528776817 1823623.3530673971 1933234.158055581 1680599.4495732132 1796862.9044374388 2117653.7375284717 1652988.2948213343 1533931.0487405485 2035918.1459370975 0.4822528543758661 0.8059587052417669 0.8957252808550489 0.9495637935707611 0.8254749597507334 0.8825811135989332 1.0401467965470452 0.811912943612226 0.7534345385160398 1.0 20.95724812836818 4.741944752405629 2.5408078053651524 0.8905512594039559 0.39223027689838885 0.6940896035272714 0.08203587820463304 0.28432139785631355 2.315037464136366 0.02021655342054519 0.3062355282535157 55200.72127139178 -4.741944752405629 -0.498320982505567 RLS(ph)AEGGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSAEGGDK 9 1 S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H7BZ52;H0YCW2 S4R3H3 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 RLS(1)AEGGDK;RLS(1)AEGGDK 94.538 0.0091672 933140000.0 701160.0 679290.0 582320.0 592280.0 598580.0 710510.0 694890.0 691190.0 966090.0 762260.0 True False 697385.0324661989 701899.757010523 664305.5943838252 667262.587272163 674805.6149383776 661394.1160606352 661275.5159624147 742770.1075917024 728010.0644427636 713611.9141963816 0.9772609153415603 0.983587497696072 0.930905974477624 0.935049673355841 0.945619883180195 0.9268260561560967 0.9266598592416939 1.0408600148277467 1.0201764431898481 1.0 19.444780176590417 1.735189747811638 9.33026401315604 1.021893307814528 0.9461550126869862 0.7242501746606276 0.0208371861407256 0.05270782741628544 17.7816504423838 0.010669630323073862 0.005750602101103657 54.34877351151763 -1.735189747811638 -0.07573829512754182 RLS(ph)AEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLSAEK 6 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 RLS(1)AEK;RLS(1)AEK;RLS(1)AEK;RLS(1)AEK 108.81 0.018435 1769970000.0 2085820.0 2206300.0 2146820.0 1957040.0 2097990.0 2360640.0 2081660.0 1729990.0 2563750.0 2152590.0 True False 2074590.17687639 2279735.361763487 2449073.595506049 2204801.06334017 2365156.590739025 2197454.5131488345 1980962.153086561 1859090.6385112212 1931948.1649899448 2015209.8632749813 1.029466069357614 1.1312644917580033 1.215294565661753 1.0940801270975709 1.1736527464664817 1.0904345761675072 0.9830053877700047 0.9225295451313216 0.9586833610720199 1.0 20.94249865767564 2.261350954647325 3.063611087966293 0.9518562904279722 1.1318713055212044 0.7125574818325957 0.04908597453107637 0.12385994574393709 2.4068831687782684 0.019383965596990994 0.014524003338692974 182.53701934876457 -2.261350954647325 0.18001501509323226 RLS(ph)APLPSSCGDPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLSAPLPSSCGDPEK 15 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 RLS(1)APLPSSCGDPEK;RLS(1)APLPSSCGDPEK;RLS(1)APLPSSCGDPEK;RLS(1)APLPSSCGDPEK 146.19 2.406e-06 2717740000.0 2835620.0 2544940.0 2364730.0 2352220.0 2389620.0 2959990.0 2781320.0 2799550.0 3770970.0 3247710.0 True False 2820353.336986998 2629646.7894512825 2697663.4293983704 2650010.8108214485 2693923.9426125907 2755372.8583669756 2646776.925925802 3008466.6368268547 2841664.9719091696 3040438.3672955777 0.9276140464888484 0.8648906742320556 0.8872613431062245 0.8715883996617868 0.8860314261225409 0.9062419708963996 0.8705247751100011 0.9894844997311485 0.9346234419600441 1.0 21.535847914285682 1.738776608591648 8.969945005777808 0.9704662801752544 0.8868688017622469 0.7394695686641344 0.023591332112497043 0.048595441067973415 15.170573063726742 0.0104106516459307 0.0056000938716829285 54.79950159823388 -1.738776608591648 -0.08359747841300746 RLS(ph)AQAHPAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSAQAHPAGK 11 1 H7C3T2;Q2TAZ0-3;Q2TAZ0 H7C3T2;Q2TAZ0 ATG2A Autophagy-related protein 2 homolog A 1 RLS(1)AQAHPAGK;RLS(1)AQAHPAGK;RLS(1)AQAHPAGK 111.07 0.0010469 643690000.0 892900.0 768670.0 727200.0 662050.0 614180.0 856300.0 936430.0 773120.0 1113550.0 1131200.0 True False 888092.7256105155 794254.7162791723 829583.4390642891 745865.4621184838 692392.1824699324 797105.9965133806 891131.3033900105 830814.1402238138 839130.5233055301 1059005.8475309564 0.8386098411836721 0.7500003122088096 0.7833605838895418 0.7043072178094664 0.6538133704211606 0.752692724380901 0.841479115028174 0.784522712656247 0.7923757222511474 1.0 20.014279124830647 0.19335351354442387 0.5912091178093405 1.011595144552641 0.7497600486183486 0.6518298477743592 0.052137509333382216 1.9393433624248204 0.9145787014695469 0.10921402324644676 0.023200539440155543 1.5608224876043986 -0.19335351354442387 -0.26183509593429244 RLS(ph)AQGQAISVVGSLSSMSPLEEEAPQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSAQGQAISVVGSLSSMSPLEEEAPQAK 29 1 Q92797;A0A087WUE9;M0R3C7;Q92797-2 Q92797 SYMPK Symplekin 1 RLS(0.997)AQGQAIS(0.003)VVGSLSSMSPLEEEAPQAK;RLS(1)AQGQAISVVGSLSSMSPLEEEAPQAK 232.68 2.0697e-36 404660000.0 147111.0 151769.0 161171.0 146481.0 160071.0 185521.0 157757.0 129428.0 187483.0 186952.0 True False 146318.9707215687 156820.53941870193 183862.47587655467 165025.4795809649 180455.09303485064 172696.3699394593 150125.69121973624 139086.57458206694 141280.32679349 175020.5633023402 0.8360101690954407 0.8960120825791279 1.050519278462957 0.94289194633599 1.031050807002161 0.9867204554766177 0.8577603019160716 0.7946870468117573 0.8072213009018521 1.0 17.41716490981709 2.173769061610452 6.061077551822411 0.8408309665787138 0.9612605115860151 0.22516586527543292 0.07905980184883905 0.23554681986587958 16.161543310414597 0.029871727889644022 0.02207980265368031 149.20008192667072 -2.173769061610452 0.1204295450073013 RLS(ph)ASSTGSTR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSASSTGSTR 11 1 A0A2R8Y5E4;A0A2R8YFK2;A0A2R8Y6M6;A0A2R8Y4C2;A0A2R8YFS8;A0A2R8Y8C4;A0A2R8Y5C9;A0A2R8Y596;P56945-4;P56945-5;P56945-8;P56945;P56945-7;P56945-3;P56945-2;P56945-6 A0A2R8Y5E4 BCAR1 Breast cancer anti-estrogen resistance protein 1 1 RLS(0.618)AS(0.042)S(0.259)T(0.07)GS(0.011)TR;RLS(0.343)AS(0.057)S(0.294)T(0.294)GS(0.01)T(0.001)R;RLS(0.576)AS(0.056)S(0.179)T(0.179)GS(0.009)T(0.003)R 110.17 0.0019383 393170000.0 455850.0 536610.0 536550.0 542760.0 559470.0 615790.0 641740.0 536560.0 633590.0 622280.0 True False 453395.7542496966 554470.7394624051 612091.5762237954 611473.3603495635 630715.1882615084 573221.8867137395 610696.5845151317 576600.8317964729 477450.2341710308 582565.557639289 0.7782742187625666 0.9517739800980828 1.0506827398175644 1.0496215444445716 1.0826510080982723 0.9839611683131209 1.0482881737633738 0.989761279628362 0.819564816199891 1.0 19.15206088361874 4.691581353304179 3.078446887175286 1.0077704372357454 0.7543185030055384 0.48696053364254555 0.0689173988896091 0.2602536352483868 3.8845046788106066 0.016959077345111186 0.15051587685901124 49156.54530442143 -4.691581353304179 -0.25345193423020707 RLS(ph)DCESTDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSDCESTDVK 11 1 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 RLS(0.966)DCES(0.027)T(0.007)DVK;RLS(1)DCESTDVK 164.93 2.3508000000000006e-05 692920000.0 947320.0 870000.0 863390.0 773680.0 720000.0 1034410.0 898380.0 864820.0 1373240.0 912180.0 True False 942219.7343771453 898957.424073894 984947.8072795877 871627.8086728019 811687.7322256538 962903.6714392225 854921.927255126 929357.2598669783 1034823.4024732488 853963.8914434123 1.1033484481229745 1.0526878631301746 1.1533834359375312 1.0206846184087868 0.9504942074935965 1.127569539048864 1.0011218692280939 1.0882863657105366 1.211788241683309 1.0 19.703815543419747 -0.6838691712589171 7.097276171396658 0.9999992302755207 1.0737586707897 0.0916886801129585 0.07287355547523419 0.0 1.8979584573050595e-18 0.06828411108695337 0.016094719332293415 0.20707650610312578 0.6838691712589171 0.07375944051417926 RLS(ph)DCESTDVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSDCESTDVKR 12 2 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 RLS(0.843)DCES(0.064)T(0.093)DVKR;RLS(1)DCESTDVKR 107.34 0.00095207 1042070000.0 839680.0 849990.0 773340.0 783410.0 747330.0 974530.0 992830.0 879360.0 1239050.0 1029100.0 True False 835159.256177219 878281.4033201952 882219.5500082204 882589.6256751636 842498.0457280526 907163.034896865 944803.0199210857 944982.3084996017 933702.7299193725 963421.9569431626 0.8668675756852088 0.9116269325092926 0.9157145980017012 0.9160987242552873 0.8744849955477567 0.9416051070448911 0.9806741616299125 0.9808602572209709 0.9691524292034135 1.0 19.877808278590102 2.4532362332815767 3.3753821395298087 0.9808679644145902 0.8999686884592958 0.8448028916862673 0.017261542646410038 0.0914030896975682 2.194280819520667 0.006187615039205864 0.00526371278778619 283.9463126559375 -2.4532362332815767 -0.08089927595529445 RLS(ph)DEHEPEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSDEHEPEQR 11 1 Q9UK59;Q9UK59-2 Q9UK59 DBR1 Lariat debranching enzyme 1 RLS(1)DEHEPEQR;RLS(1)DEHEPEQR 125.67 0.00019811 713870000.0 326570.0 363760.0 331980.0 329950.0 366200.0 387270.0 404600.0 305320.0 413890.0 353650.0 True False 324811.78340533766 375867.53170243656 378719.8983781116 371721.6361694648 412833.39936254715 360498.936435522 385027.95227790414 328104.52878354554 311892.35534185794 331079.7542250021 0.9810680938967814 1.1352779108534576 1.143893256972558 1.1227555639564795 1.246930366759863 1.0888582942179141 1.162946230823401 0.9910135687746265 0.9420459915223195 1.0 18.33681926598649 1.653224962507804 4.9886908178670915 0.9700308858867365 1.1299235924786837 0.5306100253431297 0.06386919802462346 0.11203140055398317 6.199909482708984 0.034186301673410927 0.016325542924859257 45.00128991044761 -1.653224962507804 0.1598927065919472 RLS(ph)DPLLPSPEDETGSLVHLEDPER ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSDPLLPSPEDETGSLVHLEDPER 25 1 Q8WYL5-2;Q8WYL5-5;Q8WYL5-4;Q8WYL5 Q8WYL5-2 SSH1 Protein phosphatase Slingshot homolog 1 1 RLS(1)DPLLPSPEDETGSLVHLEDPER;RLS(0.864)DPLLPS(0.136)PEDETGSLVHLEDPER;RLS(1)DPLLPSPEDETGSLVHLEDPER 144.28 1.4413e-07 133602000.0 47828.9 52438.4 49968.6 48247.5 47184.3 50900.0 50085.2 43129.2 54887.9 52221.6 True False 47571.39451669037 54183.780444317796 57003.74454514279 54355.62855307236 53192.94092174293 47381.402805711936 47662.38753195574 46347.71990964002 41361.512505178594 48888.772778838895 0.9730535624588487 1.1083072322030305 1.1659884530751894 1.111822315503075 1.0880400120161546 0.9691673591410048 0.9749147876460097 0.9480237951422101 0.8460329469158119 1.0 15.577215570370956 2.6631163299749137 2.408393620537959 0.9402956659606225 1.0984810568129042 0.5949517402014532 0.058612714561931185 0.20555629745240028 2.347689633364911 0.02136385012398727 0.020248988339697845 460.3798742663809 -2.6631163299749137 0.15818539085228167 RLS(ph)EDYGVLK ddPTM_BT-474_Trastuzumab_2h_R1 6 RLSEDYGVLK 10 1 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 1 RLS(1)EDYGVLK;RLS(1)EDYGVLK;RLS(1)EDYGVLK;RLS(1)EDYGVLK;RLS(0.998)EDY(0.002)GVLK;RLS(1)EDYGVLK 170.74 2.5933e-06 3947870000.0 8627380.0 11123750.0 9171330.0 8793600.0 6210790.0 8401400.0 12456430.0 9503390.0 10889950.0 10294980.0 True False 8580931.144672036 11493997.294301113 10462573.54537059 9906868.858371869 7001697.292263567 7820630.992768333 11853864.8927164 10212581.219036607 8206267.740353877 9637945.562424183 0.8903278285910674 1.1925775280484243 1.0855605562000075 1.0279025539422164 0.7264719692505159 0.8114417063382178 1.2299161492394712 1.0596222143910812 0.8514540455953558 1.0 23.20029422171537 3.468416300371429 24.994767973398808 0.9623526954781997 1.0676199125292096 0.0979977170686065 0.1485092556812733 514.3931065885233 1476985.3243721842 0.044525852022350286 0.060373652836062164 2940.4669361241404 -3.468416300371429 0.10526721705100994 RLS(ph)EGVEPWR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSEGVEPWR 10 1 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ITI3 A0A3B3IS53 KAT6A Histone acetyltransferase KAT6A 1 RLS(1)EGVEPWR 99.834 0.0027103 133820000.0 94928.0 178020.0 161250.0 222380.0 200570.0 147380.0 139740.0 124400.0 86424.0 114840.0 True False 94416.91819549233 183945.28808463755 183952.59838987456 250533.2851988652 226111.4006284711 137191.96749520284 132980.24234136016 133683.35969040054 65125.96322226861 107510.81288052941 0.8782085788934777 1.7109468634475435 1.7110148594475842 2.3303077940380605 2.103150321072688 1.2760759947713947 1.2369010965355964 1.243441065215972 0.6057619831657245 1.0 16.714122240341066 2.5443476259759508 4.567461476876784 1.0864324701450219 1.7742561002000796 0.4337637226980827 0.38969388329459453 0.23154094747668783 9.385814327397952 0.13768070719387446 0.12665312620836056 350.2253887096325 -2.5443476259759508 0.6878236300550578 RLS(ph)ELLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSELLR 7 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 RLS(1)ELLR 66.92 0.070512 138840000.0 152330.0 153980.0 141480.0 155160.0 155080.0 162900.0 148150.0 141010.0 174170.0 169490.0 True False 151509.87220545407 159105.13121712435 161399.154233795 174803.24009108677 174828.51876882542 151639.10642535312 140983.4185120402 151532.8822342714 131248.1372584297 158673.00309231062 0.954856019945061 1.0027233878252264 1.0171809387126707 1.1016570978327809 1.1018164108680546 0.9556704888047942 0.8885154737382817 0.9550010353438302 0.8271611093291903 1.0 17.27569716078242 2.5276906477487837 6.511261698545263 0.9178007238779086 1.0361895335984954 0.48227245795990203 0.058239774311377536 0.19637148097575183 19.86516207242657 0.019434342387356238 0.01805773294561438 337.047141122802 -2.5276906477487837 0.11838880972058685 RLS(ph)EQLAHTPTAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSEQLAHTPTAFK 14 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;F8W860;Q9UBF8-3 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 RLS(0.973)EQLAHT(0.025)PT(0.001)AFK;RLS(1)EQLAHTPTAFK 122.16 6.7601e-05 2671200000.0 1911560.0 1590690.0 1496100.0 1508430.0 1209110.0 1729740.0 1817140.0 1646960.0 2277100.0 1805470.0 True False 1901268.373354282 1643635.1550575877 1706737.875665683 1699397.0833371885 1363082.9915435554 1610167.1451699845 1729237.9960510898 1769864.5182934252 1715939.2165767353 1690243.3588593649 1.1248488943256811 0.9724251519418896 1.009758663875153 1.0054156251700943 0.8064418560788852 0.9526244470835143 1.023070427691572 1.0471063288116047 1.0152024603928695 1.0 20.688799547987514 2.179154117773504 8.005944221425299 1.027847483999339 0.9731626782051463 0.06863430828869677 0.07411478906648142 0.6298403103397692 74.58812938343216 0.02906274777923612 0.02149388794729136 151.06161303281462 -2.179154117773504 -0.05468480579419266 RLS(ph)ESLHVVDENKNESK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSESLHVVDENKNESK 17 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 RLS(0.703)ES(0.297)LHVVDENKNESK 235.76 1.8845e-20 1174500000.0 1473400.0 1254200.0 1156400.0 1158000.0 1127000.0 1662900.0 1463900.0 1439800.0 2172200.0 1604100.0 True False 1465467.3781101306 1295945.2888200902 1319211.068391012 1304602.6812675842 1270516.7697476547 1547947.637045548 1393085.5643589336 1547245.18715626 1636890.4159887524 1501724.9646608962 0.9758560406172957 0.8629711294123202 0.8784638328822765 0.8687360948029361 0.8460382557697903 1.0307797189714358 0.9276569259628081 1.0303119569605361 1.0900067951912737 1.0 20.518189182141022 2.288709186746323 1.1831263237247576 1.0387229973989909 0.8859634546664653 0.5621354182274515 0.053894768126465147 0.3399386471707325 0.9272638055157975 0.033780243491016174 0.020096933250237037 194.40578612494565 -2.288709186746323 -0.15275954273252557 RLS(ph)ESQLSFR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 RLS(1)ESQLSFR;RLS(0.772)ES(0.177)QLS(0.052)FR;RLS(0.689)ES(0.307)QLS(0.003)FR 184.98 9.1868e-07 1176220000.0 853833.0 615216.0 563531.0 689925.0 464163.0 514654.0 500963.0 533103.0 918907.0 659003.0 True False 849236.0579977642 635693.0926540742 642871.2665007405 777269.4342603958 523271.4067403548 479077.1803452037 476729.5058254963 572885.8529021821 692454.6825729563 616944.8643391463 1.376518562817508 1.0303888230514902 1.0420238560367399 1.259868554207003 0.8481655930483645 0.7765315963175696 0.7727262732564527 0.9285851718951272 1.1223931385095391 1.0 19.234782037557437 3.2305930927775175 24.999985347978992 0.8910131199490495 1.1570580114840068 0.48122623526260344 0.13556222861454892 157.04448499025864 492763.52812924545 0.03976225072248272 0.048329726868411214 1700.564437437142 -3.2305930927775175 0.26604489153495725 RLS(ph)ESSALK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLSESSALK 9 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 RLS(0.981)ES(0.017)S(0.001)ALK;RLS(0.986)ES(0.011)S(0.003)ALK;RLS(0.975)ES(0.024)S(0.001)ALK;RLS(0.814)ES(0.093)S(0.093)ALK 153.49 8.2573e-05 2973790000.0 3381040.0 2634040.0 2476170.0 2232690.0 2115930.0 2682040.0 2593510.0 2637020.0 3617130.0 2666080.0 True False 3362836.85630886 2721712.429089193 2824793.2127445308 2515348.325077139 2385381.143400317 2496636.887643057 2468052.0131296795 2833807.8229162334 2725736.778558783 2495928.4918540786 1.3473290069343316 1.0904608998102316 1.1317604738932876 1.0077806048075657 0.9557089280343756 1.0002838205466584 0.988831218997107 1.1353722000309248 1.092073265502087 1.0 21.251145171022205 5.566188493082582 1.1053635778607958 1.0357473340076648 2.6615159554656653 0.7305390333059859 0.056612808566139636 5.117051824312228 1.3308463797013272 0.01812324285854603 15.05292677494084 368288.7841591756 -5.566188493082582 1.6257686214580005 RLS(ph)EVIYEPFQLLSK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSEVIYEPFQLLSK 15 1 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 RLS(0.996)EVIY(0.004)EPFQLLSK;RLS(1)EVIYEPFQLLSK;RLS(1)EVIYEPFQLLSK 138.46 6.4095e-06 245680000.0 336876.0 333672.0 326959.0 319484.0 344528.0 391113.0 356234.0 339299.0 453029.0 478560.0 True False 335062.2970464425 344778.07081101695 372991.985221426 359930.6416425673 388401.5986225551 364076.2788909704 339001.60047396674 364619.21430541103 341386.07322758844 448017.89108417067 0.7478770462394173 0.7695631752041847 0.8325381477931887 0.8033845272820721 0.8669332326944612 0.8126378123202453 0.75666978310533 0.8138496733312571 0.7619920543830493 1.0 18.773196820253236 -2.371467881249114 2.338869645692597 2.4886983319979312 0.7986395020583165 0.7448681942467936 0.03576272241640381 4182785.082073076 670173.6867539935 32733966.411787856 0.009671346933832842 0.004251401473734737 2.371467881249114 -1.6900588299396149 RLS(ph)GEER ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSGEER 7 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 RLS(1)GEER 141.1 0.0015803 415160000.0 151220.0 211640.0 202130.0 215470.0 207560.0 223490.0 247710.0 175410.0 243630.0 215930.0 True False 150405.8483221216 218684.3094609184 230588.14705454485 242748.47990736304 233991.5356954955 208040.66233887168 235727.3209559063 188499.984913932 183590.6509747441 202149.16253302604 0.7440339917191054 1.0817967619588378 1.1406831676429656 1.2008384148893225 1.1575191940617968 1.029144319630229 1.1661058497701886 0.9324796726928607 0.9081939725807671 1.0 17.625060701237352 1.6538911507219938 7.66806081866369 0.9397815050485226 1.0831316643685602 0.1790028366952633 0.12342780114260571 0.19132063117040962 21.191519387457074 0.06231270126418613 0.032070202475756114 45.0703728379194 -1.6538911507219938 0.14335015932003758 RLS(ph)GGSHSYGGESPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSGGSHSYGGESPR 15 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 RLS(0.681)GGS(0.319)HS(0.001)YGGESPR 112.58 0.00046083 157370000.0 74719.0 106420.0 88490.0 101600.0 93988.0 95519.0 96770.0 78791.0 87131.0 82944.0 True False 74316.72120606128 109962.12536775143 100948.62283113161 114462.54958271733 105956.81468947875 88915.99635754025 92088.86540270092 84670.7845125911 65658.73254558323 77650.44290806892 0.9570675764727516 1.4161171688091543 1.3000392406086547 1.4740746516826777 1.3645358702579715 1.1450803501894862 1.1859412767513224 1.0904095500502635 0.8455680365315781 1.0 16.244706533131147 1.7956834623930706 1.220425650918186 0.9313279711723884 1.3060291449720787 0.48364354333824555 0.14261115394652166 0.3698348217232605 1.027065688779084 0.11415414824633559 0.04610634214719475 62.471719868798665 -1.7956834623930706 0.37470117379969026 RLS(ph)GLSSVGHNWR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSGLSSVGHNWR 13 1 Q14D93;A0A0G2JR24;Q8WYQ4 Q14D93 C22orf15 Uncharacterized protein C22orf15 1 RLS(0.981)GLS(0.009)S(0.009)VGHNWR;RLS(0.97)GLS(0.015)S(0.015)VGHNWR;RLS(0.998)GLS(0.001)S(0.001)VGHNWR 54.234 0.065299 308989000.0 284364.0 198717.0 127970.0 116031.0 112073.0 140716.0 130962.0 106181.0 298595.0 135309.0 True False 282833.0158198107 205331.1752180368 145987.0636648202 130720.51270307339 126344.83224128572 130988.634129834 124626.86773657647 114104.76539619302 225010.26321800982 126673.46377613707 2.232772416483737 1.6209486114700953 1.152467606971062 1.0319486718551285 0.9974056797291647 1.0340653063795815 0.9838435298242304 0.9007787581923551 1.7763014960706993 1.0 16.950754807216843 4.571345010713391 1.8034439242157723 1.0714781561600093 2.4082007167363946 0.6939344967937036 0.2345800097060399 0.3153352572452966 1.3552829372657649 0.05966142672987708 0.6408110340632894 37268.765791888705 -4.571345010713391 1.3367225605763853 RLS(ph)LESEGAGEGAAASPELSALEEAFR ddPTM_BT-474_Trastuzumab_2h_R1 6 RLSLESEGAGEGAAASPELSALEEAFR 27 1 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 RLS(0.808)LES(0.192)EGAGEGAAASPELSALEEAFR;RLS(0.993)LES(0.007)EGAGEGAAASPELSALEEAFR;RLS(0.991)LES(0.009)EGAGEGAAASPELSALEEAFR;RLS(0.976)LES(0.024)EGAGEGAAASPELSALEEAFR;RLS(0.999)LES(0.001)EGAGEGAAASPELSALEEAFR;RLS(0.992)LES(0.008)EGAGEGAAASPELSALEEAFR 257.81 3.7850999999999996e-53 802021000.0 215492.0 246147.0 241615.0 262576.0 254574.0 308694.0 284987.0 258341.0 292750.0 261211.0 True False 214331.81501541182 254339.8540959965 275632.2918447719 295818.0946774763 286992.4899216853 287354.71036751335 271201.0900539375 277619.71724901715 220605.68514902235 244540.290346012 0.8764683100365313 1.0400734117724266 1.127144698547492 1.2096906168668928 1.1736000211482762 1.1750812512773299 1.1090241598642163 1.1352718885554582 0.9021240828530815 1.0 17.89971265697081 4.65777779606055 2.481966278035884 1.1181422083748276 0.8455986628323737 0.374337619214396 0.0872007562254041 0.4120923237454572 3.5864147385352427 0.02147374907208628 0.21939349139195655 45475.53280192558 -4.65777779606055 -0.27254354554245386 RLS(ph)LESEGAGEGAAASPELSALEEAFRR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSLESEGAGEGAAASPELSALEEAFRR 28 2 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 RLS(0.986)LES(0.014)EGAGEGAAASPELSALEEAFRR;RLS(0.987)LES(0.013)EGAGEGAAASPELSALEEAFRR 176.22 1.6622e-13 113216000.0 3780.6 4846.2 5141.6 3809.0 3567.8 5738.5 7336.2 5387.4 6038.0 5703.5 True False 3760.2456696641475 5007.502837410236 5865.492588411651 4291.219009454429 4022.138181992619 5341.8110019759915 6981.319978994471 5789.435144662884 4550.015805054819 5339.49774698798 0.7042320922010519 0.9378228205517977 1.0985101719951818 0.8036746549570348 0.7532802470534826 1.0004332345658011 1.3074862673989602 1.0842658652545953 0.8521430330449135 1.0 12.382488327697045 2.483512068420905 24.985988565758863 1.0877507975245744 0.874314041620762 0.2924650378914352 0.14641423578102533 362.75861651996127 1418275.552604455 0.05127378661421843 0.04434906952375412 304.44725903748076 -2.483512068420905 -0.2134367559038124 RLS(ph)LGQGDSTEAATEER ddPTM_BT-474_Trastuzumab_2h_R1 6 RLSLGQGDSTEAATEER 17 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RLS(0.664)LGQGDS(0.24)T(0.096)EAATEER;RLS(0.989)LGQGDS(0.007)T(0.004)EAATEER;RLS(1)LGQGDSTEAATEER;RLS(1)LGQGDSTEAATEER;RLS(0.884)LGQGDS(0.11)T(0.006)EAATEER;RLS(1)LGQGDSTEAATEER 157.59 2.1313e-08 10766780000.0 1845940.0 2124670.0 2037730.0 2237730.0 2112920.0 1995550.0 1977990.0 1742700.0 1964300.0 2103370.0 True False 1836001.6641432138 2195388.3565598633 2324624.6717333263 2521026.388560372 2381987.837741981 1857602.3255194202 1882307.0670444209 1872749.123251294 1480224.5852714775 1969131.1258143438 0.9323917742572508 1.1149020640522096 1.1805332012980936 1.2802734950003847 1.2096644080809489 0.9433614151780775 0.9559074265640809 0.9510535376240166 0.7517145840957257 1.0 20.90912775383094 2.6844056840212884 6.586691869949793 0.9219511123386823 1.1514558524235015 0.535930800030133 0.10372643342584745 0.19261268417426186 18.959961961414656 0.035124137692072815 0.03324741393012724 483.51024870463385 -2.6844056840212884 0.22950474008481914 RLS(ph)LPADIR ddPTM_BT-474_Trastuzumab_2h_R1 5 RLSLPADIR 9 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4;H0YBX5;Q00537;Q00537-2;F5H6Z0;F8VQZ9;F8VZY6 E5RJM2;Q00537 CDK16;CDK17 Cyclin-dependent kinase 16;Cyclin-dependent kinase 17 1 RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR 111.12 0.0013328 4085620000.0 2873590.0 2415110.0 2262460.0 2859490.0 2538490.0 2785750.0 2458540.0 2764600.0 3431200.0 3092780.0 True False 2858118.910725863 2495495.4763851753 2580994.7023451496 3221501.140809887 2861751.6546909725 2593177.659450137 2339611.027665146 2970908.4903543503 2585626.735724428 2895396.132537823 0.9871253465482506 0.8618839572041102 0.8914133279866269 1.1126288056433342 0.9883800087080447 0.8956210275715224 0.8080452278612634 1.026080147364962 0.8930131206116239 1.0 21.465329312824142 4.569503631358876 0.0027782471206542155 1.8790017323432662 1.2328015434355652e-07 0.006381043037773315 0.08633268205095963 966497.3905497747 438.3976612312649 145401.5630842048 151135.54069914058 37111.08325279352 -4.569503631358876 -1.8790016090631119 RLS(ph)LPGLLSQVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 RLSLPGLLSQVSPR 14 1 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 2 RLS(1)LPGLLS(0.034)QVS(0.966)PR;RLS(1)LPGLLS(0.004)QVS(0.996)PR;RLS(1)LPGLLS(0.008)QVS(0.992)PR;RLS(1)LPGLLS(0.002)QVS(0.998)PR;RLS(1)LPGLLS(0.008)QVS(0.992)PR;RLS(1)LPGLLS(0.009)QVS(0.991)PR 135.54 0.00011316 809874000.0 525982.0 565024.0 537302.0 585188.0 497075.0 558392.0 602837.0 487709.0 624236.0 598483.0 True False 523150.1713540936 583830.482275779 612949.4512872956 659272.7407993224 560374.5548556475 519791.6753533815 573675.4712490239 524104.3221161215 470401.402133852 560287.3025529258 0.9337176997772064 1.042019834494874 1.0939913299737776 1.1766690728049227 1.0001557277888045 0.9277234607762346 1.0238951849079847 0.9354206667330528 0.8395717696804614 1.0 19.095807272463606 3.004358438648669 24.98008950846691 0.9491053356970741 1.0657518692953454 0.3655333919468666 0.0720570397627179 137.5880328870612 788565.4495948139 0.021497905224460278 0.02559908702356693 1010.0862021364744 -3.004358438648669 0.11664653359827126 RLS(ph)MENEELLWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSMENEELLWK 12 1 Q9ULD2;Q9ULD2-2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2 MTUS1 Microtubule-associated tumor suppressor 1 1 RLS(1)MENEELLWK 71.692 0.026891 61266000.0 62899.0 66307.0 58441.0 54702.0 59481.0 67317.0 70073.0 56295.0 71893.0 62800.0 True False 62560.35877273587 68513.98841157206 66668.98482172187 61627.26759127761 67055.55277849175 62663.53423717312 66683.30128514484 60496.01876021779 54175.933466844384 58792.05023421499 1.064095545630893 1.1653614415320939 1.1339795866299414 1.0482245022204144 1.1405547605731852 1.0658504676658658 1.1342230968216416 1.0289829750657538 0.9214839974285471 1.0 15.843333468912874 1.5222592068114502 3.8039691839542384 0.9622843294150858 1.1077237133924307 0.6815971548495126 0.04047630397641691 0.09997977947413057 3.1435055825320677 0.024889572499759323 0.009939127386690281 33.28581589938615 -1.5222592068114502 0.1454393839773449 RLS(ph)NLPTVDPIAVCHELYNTIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSNLPTVDPIAVCHELYNTIR 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;Q86U86-6;C9JQF1;C9JPI5;C9JCJ2;C9J053 Q86U86-8 PBRM1 Protein polybromo-1 1 RLS(1)NLPTVDPIAVCHELYNTIR;RLS(1)NLPTVDPIAVCHELYNTIR 254.05 2.2730999999999997e-37 5163600000.0 1122210.0 1170210.0 1386810.0 1469960.0 1186610.0 1242690.0 1160580.0 1183430.0 1300060.0 1293950.0 True False 1116168.1460492527 1209159.7324431178 1582060.7936313897 1656056.785281607 1337717.7499115043 1156785.765277607 1104438.3115538573 1271743.5559357754 979677.6329114882 1211369.0031936697 0.9214105223978588 0.9981762198432291 1.3060106288508482 1.3670952293773049 1.1043024432561235 0.954940866266052 0.9117273998609021 1.0498399352987682 0.8087359263186137 1.0 20.208206970266094 2.8083201095325223 4.399474167023296 0.9533869102166911 1.1571509852273338 0.3414824891088495 0.13494188639674978 0.2825297292700371 10.66128756580937 0.04576232536056109 0.04818530048454451 643.1616038428759 -2.8083201095325223 0.20376407501064275 RLS(ph)NSSLCSIEEEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSNSSLCSIEEEHR 15 1 H7C1F9;Q2PPJ7-3;Q2PPJ7-2;Q2PPJ7 H7C1F9 RALGAPA2 Ral GTPase-activating protein subunit alpha-2 1 RLS(0.798)NS(0.182)S(0.018)LCS(0.002)IEEEHR;RLS(0.62)NS(0.303)S(0.077)LCSIEEEHR 158.99 8.422799999999998e-07 286004000.0 154309.0 203789.0 199958.0 209243.0 198455.0 210780.0 217130.0 169608.0 201991.0 196303.0 True False 153478.21748934162 210571.99367194797 228110.34833390676 235733.14234583193 223727.06791505817 196209.27472274963 206626.59238285082 182265.01021197278 152213.0245907301 183774.77447654642 0.835143005488649 1.145815546620744 1.241249507630431 1.2827285083999191 1.2173981361278206 1.0676616270193824 1.124346869538511 0.9917847034835223 0.8282585301725169 1.0 17.487579225638466 1.6373934364482758 2.6878702085692443 0.9109244711199024 1.1447275397847128 0.3417598787696361 0.12291141833487262 0.2544725242006269 4.237898128401899 0.08465298120826212 0.03444072838006749 43.3903782896334 -1.6373934364482758 0.23380306866481038 RLS(ph)NVSLTGVSTIR ddPTM_BT-474_Trastuzumab_2h_R1 4 RLSNVSLTGVSTIR 14 1 F8WBA3;Q15139;A0A494C0Q1 F8WBA3 PRKD1 Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 RLS(0.997)NVS(0.003)LTGVSTIR;RLS(0.999)NVS(0.001)LTGVSTIR;RLS(1)NVSLTGVSTIR;RLS(1)NVSLTGVSTIR 230.27 5.9783e-13 1859260000.0 844510.0 920910.0 884930.0 891410.0 859230.0 833210.0 861590.0 762600.0 897860.0 888970.0 True False 839963.2519938814 951561.9326481494 1009520.4520505514 1004262.4146016736 968647.8474447886 775612.1538653688 819911.6001065726 819509.0844043359 676594.4337076057 832235.1735144915 1.009285931098964 1.1433810573395335 1.2130230542737002 1.2067050835651645 1.1639112095613942 0.9319627174491961 0.9851921983111132 0.984708542110262 0.8129846649599992 1.0 19.666631738044885 2.739791666304622 24.958144227346263 0.9491168851390783 1.1540015734875289 0.6690808091602097 0.0716926386119092 66.75441691647622 1353379.3044025213 0.022920101934365156 0.02310653834029154 549.2773189889659 -2.739791666304622 0.20488468834845053 RLS(ph)PPECLNASLLGGVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSPPECLNASLLGGVLR 18 1 Q92754;Q92754-2;C9JXZ2;H7C5E5;C1K3N0;P05549-2;H7C4N4;A0A6E1XE14;P05549-5;P05549-6;P05549;Q92481;Q92481-2;Q6VUC0 Q92754;A0A6E1XE14 TFAP2C;TFAP2A;TFAP2B;TFAP2E Transcription factor AP-2 gamma;Transcription factor AP-2-alpha;Transcription factor AP-2-beta;Transcription factor AP-2-epsilon 1 RLS(1)PPECLNASLLGGVLR 144.76 5.8759e-08 344440000.0 187960.0 271500.0 239920.0 196180.0 233680.0 258200.0 263150.0 193780.0 219160.0 213720.0 True False 186948.04424431923 280536.71337478387 273698.65057797614 221016.3678852115 263437.76287012594 240351.24173742253 250420.42916937827 208240.8475949017 165150.9545935434 200080.2066251022 0.9343655097008711 1.4021212697987464 1.3679446617666462 1.1046388426584253 1.316660789758875 1.2012744578366898 1.2516002127017014 1.0407868479718756 0.8254237507011023 1.0 17.61021892695666 1.5718251419165141 3.35434520597403 0.9143688844088359 1.235751280735794 0.4760224533484122 0.133438610128609 0.15727728158879667 4.059174445826436 0.08257903064174764 0.03346325191289512 37.30999079701017 -1.5718251419165141 0.3213823963269581 RLS(ph)PPSSSAASSYSFSDLNSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSPPSSSAASSYSFSDLNSTR 22 1 P50402 P50402 EMD Emerin 1 RLS(0.97)PPS(0.01)S(0.01)S(0.01)AASSYSFSDLNSTR;RLS(0.969)PPS(0.016)S(0.004)S(0.01)AASSYSFSDLNSTR 160.05 1.1600999999999998e-11 1382000000.0 335130.0 428430.0 466770.0 445540.0 467620.0 445730.0 351090.0 324980.0 361950.0 351770.0 True False 333325.6973164433 442690.03355859616 532487.1587624294 501945.3183177545 527168.6351991113 414917.73423555895 334106.43540595507 349231.657815003 272752.27238151594 329319.737434551 1.012164347977134 1.3442560018030392 1.616930594292897 1.5241883836905192 1.6007805645231963 1.259923676205468 1.014535108064561 1.0604637928341885 0.8282293509228936 1.0 18.329129455381967 2.358210298220559 3.0790509980520877 0.9852128546350414 1.433009232098863 0.601389085001306 0.16993710487944633 0.18395601930685976 3.508029444621765 0.06827395104851795 0.05457628574083853 228.1446548399113 -2.358210298220559 0.4477963774638216 RLS(ph)PS(ph)AS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 RLS(1)PS(1)AS(1)PPR 122.1 0.0077021 815870000.0 605370.0 828880.0 659280.0 828050.0 747680.0 809580.0 679460.0 620220.0 779030.0 728140.0 True False 602110.7551829299 856468.7697314591 752100.893435513 932881.0450981196 842892.6161534389 753615.6401463307 646591.9240107392 666503.9658133453 587048.4949671832 681669.4818079834 0.883288413595925 1.2564282142422714 1.1033219375476886 1.3685239987916886 1.2365121787729818 1.105544050684982 0.948541692516132 0.9777523911523591 0.861192279592981 1.0 19.37871286978769 2.3510562895589313 3.337598170820252 0.9468730605037383 1.1814262209344288 0.4230739460031109 0.12257527431197113 0.2256224914461605 4.971308567385753 0.045301828487012086 0.036400344333694955 224.41727755315878 -2.3510562895589313 0.23455316043069052 RLS(ph)PS(ph)ASPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RLS(0.727)PS(0.871)AS(0.402)PPR 107.39 0.001531 2035400000.0 387480.0 477000.0 414320.0 460120.0 467540.0 456030.0 438740.0 424310.0 443790.0 417830.0 True False 385393.85073307477 492876.6566474107 472652.6546660022 518371.14482283324 527078.4476733082 424505.7194791516 417516.4700504396 455974.16680252244 334423.90098133107 391163.73167773994 0.9852494480510308 1.2600264716092517 1.2083243317031163 1.3252024736533934 1.3474624690091195 1.085237932613038 1.0673700965569333 1.1656862072738803 0.8549460849730467 1.0 18.577413085641293 1.7003755671916747 1.0671881969298882 0.9546658758922494 1.2194340211781816 0.40348457281839256 0.11691323685796069 0.49712431421267755 1.0625816633713852 0.10218646756806313 0.04001775886904982 50.16208354833022 -1.7003755671916747 0.2647681452859322 RLS(ph)PSAS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RLS(0.998)PS(0.003)AS(1)PPR 104.97 0.009138 253850000.0 145060.0 178970.0 184520.0 190410.0 185920.0 197610.0 179720.0 159830.0 185100.0 174950.0 True False 144279.013077681 184926.9082603506 210498.8121234086 214515.8864768231 209595.8099658242 183949.68582390415 171026.25700292864 171757.3262002949 139484.5852129258 163784.54121776926 0.8809073921442101 1.1290864625280495 1.2852178267760181 1.309744404947235 1.2797044727630547 1.1231199504922942 1.044214891901982 1.0486784950719186 0.8516346181137202 1.0 17.321439669261096 1.919340882228022 1.4749221813725217 0.9465946350143895 1.1850113345850042 0.36184052210990003 0.12302738338577938 0.454726519964993 1.8428209483008289 0.09265255723723442 0.04144831715599228 83.05023816556547 -1.919340882228022 0.23841669957061473 RLS(ph)QPAGGLLDSITNIFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSQPAGGLLDSITNIFGR 19 1 Q676U5-3;Q676U5;Q676U5-4 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 RLS(1)QPAGGLLDSITNIFGR 214.02 4.6992e-18 34227000.0 17246.0 12323.0 20658.0 14934.0 21489.0 19941.0 16392.0 18060.0 23997.0 19205.0 True False 17153.149452210735 12733.16360558919 23566.466837445132 16824.642868782477 24225.496774718154 18562.525606064864 15599.056336479001 19407.72890682181 18083.260893325692 17979.320457772283 0.9540488191696699 0.7082116165344152 1.3107540350479476 0.9357774621292403 1.3474089207996574 1.0324375523347695 0.867611007496987 1.0794472990458346 1.0057811103482768 1.0 14.13405087366495 4.257788563989755 24.999999913657362 1.068443753147408 0.8311302623046227 0.28381186226725397 0.15320471623347948 299.8042303367968 389795.89933255105 0.035504238853704025 0.09690731227359328 18104.584574018972 -4.257788563989755 -0.2373134908427853 RLS(ph)QPESAEK ddPTM_BT-474_Trastuzumab_2h_R1 6 RLSQPESAEK 10 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK 211.22 6.660700000000001e-08 24513830000.0 12234930.0 12768560.0 12156750.0 11734310.0 11070460.0 12510630.0 12532940.0 10336690.0 14158580.0 10666660.0 True False 12169058.496308524 13193553.800842486 13868314.73163477 13219872.442854084 12480217.46124279 11645799.594955273 11926673.811719812 11108066.296448287 10669387.674251912 9985904.626612939 1.2186235450193836 1.321217685744865 1.388789023147188 1.3238532648932435 1.2497833624389303 1.1662237954805448 1.1943508633093316 1.1123745631261819 1.0684447802372814 1.0 23.25146169716486 1.9904221492980338 0.6407254960611998 1.0088769108657294 1.3236112675383502 0.8376453853512118 0.046724014461918734 0.28889018572962566 0.23452390513119173 0.04501394521092671 0.02701392394457785 97.81875912474335 -1.9904221492980338 0.31473435667262084 RLS(ph)QSDEDVIR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSQSDEDVIR 11 1 A0A499FIZ0;Q9H7D7-2;Q9H7D7;H0Y917;Q9H7D7-3;Q9H7D7-4 A0A499FIZ0 WDR26 WD repeat-containing protein 26 1 RLS(0.993)QS(0.007)DEDVIR;RLS(0.933)QS(0.067)DEDVIR;RLS(1)QSDEDVIR 147.51 2.1603000000000006e-05 733630000.0 547900.0 633410.0 563710.0 609230.0 558090.0 618480.0 616300.0 520850.0 675230.0 624220.0 True False 544950.1672774131 654492.6689455699 643075.4681448444 686358.4555342414 629159.453441409 575725.9333453177 586487.2145053697 559718.4718227093 508828.6141184447 584381.7451783705 0.9325242818991176 1.119974527516768 1.100437297110571 1.1745035863923925 1.0766240708791666 0.9851880865470725 1.0036029005771843 0.9577959551968325 0.870712711881743 1.0 19.15655158660975 2.556741645916719 1.9458460980053918 0.9530767975806163 1.0900284952608714 0.4373602405317262 0.06674811087203311 0.3086720548121569 2.3423314182030643 0.02702125492496434 0.023294042747745866 360.3642049722774 -2.556741645916719 0.13695169768025517 RLS(ph)S(ph)LRAS(ph)TSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 RLS(1)S(1)LRAS(0.758)T(0.202)S(0.04)K;RLS(0.999)S(0.999)LRAS(0.657)T(0.103)S(0.242)K 81.40899999999998 0.013445 1370830000.0 1064010.0 728830.0 567090.0 772060.0 673590.0 1023570.0 888840.0 884030.0 1412250.0 987910.0 True False 1058281.4883826233 753088.6659629614 646931.3427653577 869802.7168389057 759367.6938192754 952813.0151246071 845843.413501465 950000.807613382 1064219.9106804687 924860.7380076972 1.1442603679580305 0.8142725007283138 0.6994905461755839 0.940468852329708 0.8210616610832446 1.0302232281771673 0.9145630025592301 1.027182546055356 1.1506812506420958 1.0 19.81887662091847 2.060772730433091 1.1047483358884174 1.068885415592718 0.8772268704997641 0.24622230093674047 0.12026220179394533 0.6686907954120714 1.5144911125525315 0.08949668095898905 0.04360501189894902 115.01983239967964 -2.060772730433091 -0.191658545092954 RLS(ph)S(ph)SESPQRDPPPPPPPPPLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSSSESPQRDPPPPPPPPPLLR 23 2 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 2 RLS(0.528)S(0.528)S(0.528)ES(0.415)PQRDPPPPPPPPPLLR 95.957 0.0020206 140860000.0 89308.0 97234.0 86234.0 92871.0 105550.0 101950.0 103150.0 92575.0 126710.0 111610.0 True False 88827.1756510517 100470.37491080583 98374.99764063522 104628.45907772188 118991.16685613578 94902.43646448586 98160.24042873413 99483.41658632483 95484.01832701155 104486.9542458717 0.8501269492651642 0.9615590351536678 0.9415050744913643 1.0013542822917127 1.1388136223794383 0.9082706750276958 0.9394497249651859 0.9521132786800075 0.913836746569576 1.0 16.67296329980813 4.990826477236862 1.7512403655513675 0.9745546374546165 0.7294013368611117 0.2593532983521094 0.06264590871741268 3.0005009268980056 5.286843808881114 0.016928761855499637 1.5075982595264754 97909.87074492998 -4.990826477236862 -0.2451533005935047 RLS(ph)SAS(ph)TGKPPLSVEDDFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSSASTGKPPLSVEDDFEK 20 2 O75152;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 2 RLS(0.761)S(0.239)AS(0.948)T(0.052)GKPPLSVEDDFEK 169.01 6.1201e-12 115320000.0 117520.0 75287.0 67792.0 73669.0 69018.0 94603.0 95246.0 95262.0 174830.0 113660.0 True False 116887.2853776996 77792.88228304745 77336.5243413729 82995.4878465472 77807.03319826417 88063.31728150809 90638.58710494633 102370.93417063438 131745.4891019766 106406.12149077823 1.0985015123197563 0.7310940497891321 0.7268052181384633 0.7799879056181939 0.7312270394613282 0.8276151413820696 0.8518174127115572 0.962077488930056 1.2381382504708098 1.0 16.699221625185213 1.561875301378001 2.7762091708491243 1.118284022006763 0.8075703604528287 0.5046728466014068 0.11698455239055858 0.17313977816246207 2.979681274791985 0.08005245621417725 0.03016585850708479 36.46492304552561 -1.561875301378001 -0.3107136615539342 RLS(ph)SASTGKPPLSVEDDFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSSASTGKPPLSVEDDFEK 20 2 O75152;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 RLS(0.967)S(0.033)ASTGKPPLSVEDDFEK;RLS(0.986)S(0.011)AS(0.002)TGKPPLSVEDDFEK;RLS(0.496)S(0.496)AS(0.007)TGKPPLSVEDDFEK 293.53 8.1333e-55 2497540000.0 1363300.0 932850.0 959740.0 861370.0 936230.0 1314210.0 1145880.0 1144010.0 1761060.0 1258200.0 True False 1355960.144276868 963899.3483302671 1094863.0497903756 970419.3536817431 1055453.3410300328 1223361.7560175783 1090449.4067133106 1229381.8353650714 1327070.359995005 1177900.5988007851 1.1511668689678607 0.8183197710499581 0.9295037721392199 0.8238550474205738 0.8960461876873013 1.0385950709788898 0.92575673008698 1.0437059261339192 1.1266403645147043 1.0 20.167786366838996 1.9290267744262688 1.2951076655732785 1.0665911758670332 0.9213524058727272 0.2113231899432132 0.09790601165522006 0.6069135170091988 1.8858246115129393 0.07062172092410314 0.0312744318721741 84.92328289616597 -1.9290267744262688 -0.14523876999430607 RLS(ph)SLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSSLR 6 1 P62753;A2A3R5;Q9Y253-2;Q9Y253 P62753 RPS6;POLH 40S ribosomal protein S6;DNA polymerase eta 1 RLS(0.5)S(0.5)LR 81.163 0.066312 4239300000.0 2352400.0 3253100.0 3077300.0 3341600.0 2440800.0 3097500.0 3012100.0 2695500.0 2992000.0 3017200.0 True False 2339734.9397762083 3361377.4669595216 3510557.0916289007 3764646.217378031 2751621.4122449653 2883377.1157306973 2866393.2156605893 2896651.897471662 2254661.690745946 2824639.712845123 0.8283303987889863 1.1900198994135676 1.2428335818067524 1.3327881075445496 0.9741495170983736 1.0207946530732626 1.0147818862085636 1.0254942902271968 0.7982121332121803 1.0 21.429635430607792 3.1762469574323218 24.99943270498287 0.9821358230213536 1.1581994201587325 0.28336028716796435 0.13642633117157157 86.75278956038693 34803.407878110374 0.039838357609049434 0.04761596287403425 1500.5378595495033 -3.1762469574323218 0.17606359713737885 RLS(ph)SSESPQRDPPPPPPPPPLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSSSESPQRDPPPPPPPPPLLR 23 2 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 1 RLS(0.322)S(0.322)S(0.322)ES(0.033)PQRDPPPPPPPPPLLR 108.37 0.00065544 201160000.0 68181.0 92957.0 75695.0 94355.0 92963.0 80386.0 75335.0 71237.0 90313.0 81834.0 True False 67813.92107162127 96051.0175513069 86352.1980472653 106300.33332556396 104801.28701512971 74829.1050282899 71690.75824235273 76553.0666741564 68056.57128219878 76611.2840583878 0.8851688351801832 1.253745042024142 1.1271472487193095 1.387528412192507 1.3679614994477505 0.9767373820710321 0.9357728319462054 0.9992400938719808 0.8883361259201816 1.0 16.225269281570696 2.641894377512909 7.9636499104842295 0.959841030554563 1.212649565283924 0.4529645023159963 0.1341424008326546 0.2777262390148655 20.527779653675804 0.04402305579593573 0.04146702921375938 438.4240579881901 -2.641894377512909 0.25280853472936093 RLS(ph)STSLASGHSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSSTSLASGHSVR 14 1 Q9BZL6-2;Q9BZL6;Q9BZL6-3;M0QZ82 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 RLS(0.892)S(0.098)T(0.011)SLASGHSVR;RLS(0.932)S(0.066)T(0.002)SLASGHSVR;RLS(0.91)S(0.086)T(0.005)SLASGHSVR 229.62 7.465300000000002e-13 4474510000.0 681480.0 947270.0 817150.0 1021950.0 917870.0 930470.0 909470.0 821290.0 909630.0 970990.0 True False 677810.9873995456 978799.3093131932 932197.617204874 1151328.7652171052 1034755.3038582782 866148.7989907812 865475.4615872109 882578.8302261169 685463.8749175252 909020.5868936382 0.7456497654423906 1.0767625325824657 1.0254967056251585 1.2665596157194827 1.1383188882380635 0.9528373850702753 0.9520966566277311 0.9709118175663328 0.7540685929456615 1.0 19.79395344242389 2.5785082435467586 5.977662378486202 0.9271528655092703 1.0623120680374687 0.17130926802068847 0.1368197744192197 0.42133385633486886 20.73608581737033 0.0456853792081622 0.042829357426754526 378.8857254874104 -2.5785082435467586 0.13515920252819835 RLS(ph)TSPDVIQGHQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSTSPDVIQGHQPR 15 1 Q9Y385 Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 1 RLS(0.942)T(0.058)S(0.001)PDVIQGHQPR;RLS(0.981)T(0.019)SPDVIQGHQPR;RLS(0.832)T(0.143)S(0.025)PDVIQGHQPR 299.57 1.9541999999999998e-44 3877260000.0 648420.0 968700.0 1117740.0 828740.0 1155330.0 1203730.0 918300.0 745270.0 938340.0 934660.0 True False 644928.9787662352 1000942.5939084854 1275108.0764297554 933658.3990273733 1302454.4273225896 1120518.9783756312 873878.3207533349 800885.8318043783 707098.6801118144 875009.1985973163 0.7370539416043725 1.1439223673454482 1.4572510534447154 1.0670269530012653 1.4885036973445416 1.2805796558160525 0.9987075817650898 0.9152884713534881 0.8081042819267833 1.0 19.73893865789718 2.084254118048667 4.2246191773359785 0.9098642752165578 1.2119307310221545 0.2950620764019004 0.20297421366210697 0.26655138592384026 8.960882706866194 0.08273661355113233 0.05824310386847131 121.4099046536598 -2.084254118048667 0.30206645580559677 RLS(ph)VELTSSLFR ddPTM_BT-474_Trastuzumab_2h_R1 5 RLSVELTSSLFR 12 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0;A0A2R8Y7Z0;A0A2R8YG06 A0A2R8Y804 CTNNB1 Catenin beta-1 1 RLS(1)VELTSSLFR;RLS(1)VELTSSLFR;RLS(1)VELTSSLFR;RLS(1)VELTSSLFR;RLS(1)VELTSSLFR 230.45 3.5406e-12 2029263000.0 416942.0 575058.0 659443.0 530552.0 544872.0 686651.0 541036.0 404451.0 650879.0 647508.0 True False 414697.2305986115 594198.457900098 752286.842418692 597719.8288012773 614258.2194906332 639184.4325725904 514864.02172176976 434633.18738056405 490478.59178176115 606183.4850805114 0.6841117265732384 0.9802287137881666 1.241021672371651 0.9860377979810684 1.0133206110177173 1.054440525524538 0.8493534291079987 0.7169993872776613 0.809125625909484 1.0 19.209395022176007 2.127277843488532 5.341792464760489 0.8045986752997601 1.003936683763505 0.18812024311249964 0.14432183443318639 0.27104315895048364 11.677812709808514 0.05576368088363993 0.040794653832419515 134.0534030889425 -2.127277843488532 0.19933800846374494 RLSDCES(ph)TDVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSDCESTDVKR 12 2 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 RLS(0.218)DCES(0.635)T(0.147)DVKR 101.42 0.0021109 737100000.0 425220.0 499270.0 434350.0 442350.0 482410.0 613360.0 547040.0 459790.0 807550.0 540280.0 True False 422930.6627663833 515887.90013491164 495502.70456212014 498351.4646448328 543842.0540319134 570959.8668941348 520577.5853042634 494101.8645663118 608540.1231156042 505798.867843021 0.8361637197211826 1.0199467277080223 0.9796437597323837 0.9852759591377742 1.0752140595947308 1.1288278863276084 1.0292185657201374 0.9768742003583538 1.2031267007589859 1.0 18.94820428217919 5.863042190811844 0.7352881877200315 1.055582315283622 1.712638974304479e-13 0.4762689241489291 0.06761198457153535 11.708165654560391 1.3676981828200403 0.024328619963067993 14.941913263855888 729528.3789872515 -5.863042190811844 -1.0555823152834507 RLSEDYGVLK ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSEDYGVLK 10 1 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 ;; 155.53 2.0114e-05 1344770000.0 2334870.0 2740640.0 2665450.0 2405690.0 2094330.0 2342040.0 2600770.0 2068710.0 3718350.0 2637220.0 False True 2322299.3193484438 2831860.5456481343 3040722.191493275 2710250.107339046 2361030.511433547 2180140.2873691455 2474960.8191937846 2223087.6448965305 2802012.465837295 2468910.361762367 0.9406171059571118 1.1470082468391782 1.231604937379231 1.0977515220133 0.9563046710809651 0.8830374407813288 1.0024506590134357 0.9004327088285367 1.1349186706953394 1.0 21.235443027113703 3.2772829019990475 5.801701756606047 0.9666412321825574 1.118078721947644 0.28998846321435456 0.09360127994531754 0.20004695523012567 17.028053666324116 0.02602305450245926 0.03473432918384826 1893.576704067755 -3.2772829019990475 0.15143748976508664 RLSELLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSELLR 7 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;; 168.23 0.0016942999999999995 6607100000.0 1475449.0 2075658.0 2417423.0 1656499.0 1193353.0 1510429.0 1939728.0 1303634.0 2933950.0 1667188.0 False True 1467505.346521795 2144745.021768244 2757775.1457826085 1866211.6035553324 1345319.4309926124 1406016.5983974198 1845895.9461594538 1400917.7887993194 2210917.335415799 1560786.6344885437 0.9402344395412405 1.3741436365330348 1.7669136093584679 1.195686561069812 0.8619496100653514 0.9008384409046143 1.1826702672683624 0.8975716205171043 1.4165404076133044 1.0 20.573841898180998 3.47929483883319 24.91021768903521 1.0314633055978744 1.3817182393039957 0.2575874417916354 0.24066644637557533 96.957440319096 1111181.6310117443 0.06562614716074712 0.09032672963948961 3015.0522228666923 -3.47929483883319 0.3502549337061214 RLSES(ph)LHVVDENKNESK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSESLHVVDENKNESK 17 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 RLS(0.183)ES(0.817)LHVVDENKNESK 201.64 5.9004e-12 1365800000.0 985280.0 859800.0 897800.0 863470.0 801190.0 1215700.0 1163900.0 1073300.0 1551600.0 1176300.0 True False 979975.3619548987 888417.923239924 1024202.4361825081 972785.2134664272 903216.7974748212 1131661.5204499788 1107597.710470225 1153395.0961069681 1169228.970374802 1101227.5269189044 0.8898936305167979 0.8067523754383485 0.9300552439404572 0.8833644180582348 0.8201909009684019 1.027636426430626 1.005784620703356 1.0473721986718059 1.0617505845010584 1.0 20.070681147258995 2.727304623377564 24.509689737036883 1.0308188434903431 0.8672745424795648 0.8310254128356879 0.03661851377642795 213.9157976685973 465796.2444603006 0.011636776304779647 0.011066809323448985 533.7091191445685 -2.727304623377564 -0.16354430101077833 RLSES(ph)QLSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 RLS(0.22)ES(0.774)QLS(0.006)FR 106.79 0.002511 570060000.0 252270.0 198340.0 192730.0 224710.0 145300.0 161530.0 164430.0 173980.0 262850.0 199030.0 True False 250911.8063498322 204941.62700093788 219864.70876080942 253158.2629599649 163803.09373942687 150363.81130072012 156475.892716401 186963.27105253897 198074.13950954942 186327.73500184418 1.3466154480295098 1.0998986651069926 1.179989166715483 1.3586719280275652 0.8791127833857135 0.8069856658711162 0.8397885194861209 1.0034108505139532 1.063041632033948 1.0 17.507482910774765 3.2290679844648773 24.999228030906966 0.9251005969761014 1.2311009667819113 0.694816716262802 0.10176385390338229 117.34612775597212 309035.22572608985 0.0308021996226074 0.03727303865494498 1694.60305287344 -3.2290679844648773 0.3060003698058099 RLSES(ph)SALK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSESSALK 9 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 RLS(0.45)ES(0.527)S(0.022)ALK;RLS(0.36)ES(0.577)S(0.063)ALK 189.56 4.0334e-05 1806400000.0 1630730.0 1212750.0 1154840.0 1204830.0 1041050.0 1306240.0 1350140.0 1262590.0 1740240.0 1303640.0 True False 1621950.3308711338 1253115.6506271437 1317431.4339507748 1357361.3544659961 1173621.5467132174 1215942.7033582139 1284828.5701643354 1356810.8771021129 1311381.1700212965 1220440.579097644 1.3289875465058314 1.0267731769076858 1.07947200094317 1.112189628658191 0.9616375977771543 0.9963145475359761 1.0527579893437318 1.1117385805913607 1.074514558497302 1.0 20.218970624108916 4.741711175631454 24.737542716309246 1.0515968041985997 1.328987665852623 0.7570452883256676 0.0479784903586151 136.6610093307609 1072974.5221802338 0.01223469436752744 0.08811041873819005 55171.04062777644 -4.741711175631454 0.27739086165402327 RLSESQLS(ph)FR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 RLS(0.005)ES(0.051)QLS(0.944)FR 107.09 0.0024679000000000003 594380000.0 615430.0 480710.0 445080.0 470400.0 386500.0 364700.0 359290.0 351540.0 616020.0 482650.0 True False 612116.5932607008 496710.14175466885 507743.3952952881 529952.5917688013 435718.48403502104 339489.1474114564 341909.7700789129 377773.6998839495 464210.12524509255 451846.86378254544 1.3546992185283515 1.0992886784619007 1.1237068042141891 1.172858847204138 0.9643056507850716 0.7513367351263458 0.7566939100045618 0.8360657783955667 1.0273616184010896 1.0 18.78547438359283 3.122187018708028 3.318035591560491 0.852009423579603 1.1791365906720381 0.6562897587780285 0.10650680621263721 0.14308917401091992 3.107246142609188 0.03217338752466856 0.03961748336670856 1324.9119545505157 -3.122187018708028 0.32712716709243517 RLSKPPFQTNPS(ph)PEMVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSKPPFQTNPSPEMVSK 18 2 Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3 Q4LE39-2 ARID4B AT-rich interactive domain-containing protein 4B 1 RLS(0.052)KPPFQT(0.042)NPS(0.906)PEMVSK 61.524 0.055080999999999984 0.0 89994.0 109320.0 117340.0 136780.0 115880.0 139890.0 121970.0 109560.0 135540.0 135130.0 True False 89509.48230327344 112958.65011466462 133860.4520624363 154096.33397563067 130636.63112542871 130219.73356563917 116069.84512935227 117735.92353440725 102137.9831429496 126505.88770938662 0.7075519086423668 0.8929121968943995 1.0581361428010752 1.2180961437117117 1.0326525783964409 1.0293570988947496 0.9175054792389714 0.9306754465442272 0.8073773086165306 1.0 16.948845005375905 -3.1366020009002935 9.874926985062794 0.9998404907413635 0.9662230076728398 0.0 0.13512290067081928 0.0 0.0 0.0 0.03146021859027441 0.0007301263110687432 3.1366020009002935 -0.033617483068523746 RLSPS(ph)AS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RLS(0.477)PS(0.534)AS(0.99)PPR;RLS(0.189)PS(0.843)AS(0.968)PPR;RLS(0.389)PS(0.698)AS(0.913)PPR 139.05 3.2358000000000004e-05 10146200000.0 2331140.0 2906550.0 2696140.0 2692580.0 2871090.0 2752010.0 2790140.0 2271380.0 2555580.0 2464950.0 True False 2318589.4012540043 3003292.759703422 3075733.076731013 3033460.3519235537 3236706.2932163216 2561770.026234717 2655170.2688301345 2440881.9094339367 1925791.5520175546 2307634.780650133 1.0047471205997274 1.3014593058167119 1.3328508924035558 1.314532254999612 1.4026076918048707 1.1101280184002889 1.1506024658209086 1.057741861884342 0.8345304760378932 1.0 21.137983482285996 1.8433327980675416 1.2918935719343405 0.927338907674483 1.2690831541708318 0.558721863894181 0.11514781614355932 0.3156355722479207 0.9814504827642431 0.08999324547441385 0.037480808114555356 69.71605407160344 -1.8433327980675416 0.3417442464963488 RLSQPESAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLSQPESAEK 10 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ;;; 123.2 0.00075079 591920000.0 417881.0 383616.0 320197.0 348148.0 324596.0 389434.0 409334.0 352926.0 607070.0 446503.0 False True 415631.1751269434 396384.4266592307 365277.9543977835 392223.5011035818 365931.3765687748 362513.3442090299 389532.95061226824 379263.1302419154 457465.7328212369 418006.7962695491 0.9943167882345295 0.9482726840728797 0.873856496252363 0.9383184785604751 0.8754196817718873 0.867242703813039 0.9318818595501502 0.9073133107561961 1.094397834924777 1.0 18.673166873357005 1.2493238805636964 24.999988465064042 1.0471989169103666 0.9147427600427789 0.5965647708723341 0.04276771564674771 118.10623668851444 274331.179975791 0.02874264815771441 0.010266849807023495 17.755130984664635 -1.2493238805636964 -0.13245615686758772 RLSS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSSLR 6 1 P62753;A2A3R5;Q9Y253-2;Q9Y253 P62753 RPS6;POLH 40S ribosomal protein S6;DNA polymerase eta 1 RLS(0.039)S(0.961)LR 83.62299999999998 0.060142 1880200000.0 1217500.0 1580500.0 1593800.0 1658800.0 1375200.0 1401700.0 1452100.0 1433200.0 1669300.0 1601300.0 True False 1210945.115276967 1633105.9870675756 1818193.1864420571 1868803.9099194054 1550323.5685509972 1304803.7782468854 1381856.3754393088 1540152.6616421377 1257923.382474001 1499103.6630580963 0.8077794385524345 1.089388297361719 1.2128535412507992 1.2466141975179617 1.0341670204370088 0.8703892935496876 0.9217884056265936 1.0273823616042026 0.8391170093653834 1.0 20.515668718459768 2.9949185786403274 24.95089985415271 0.9415862918220667 1.1033080955996166 0.27158460993065825 0.12116180958959798 296.23582332124863 1454594.8930520846 0.03671094309019715 0.04273370736881489 988.3677784812886 -2.9949185786403274 0.16172180377754997 RLSS(ph)TSLASGHSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLSSTSLASGHSVR 14 1 Q9BZL6-2;Q9BZL6;Q9BZL6-3;M0QZ82 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 RLS(0.293)S(0.701)T(0.006)SLASGHSVR 176.91 1.3214e-06 2107100000.0 371560.0 470630.0 481460.0 449730.0 505970.0 474270.0 492810.0 466150.0 473100.0 497740.0 True False 369559.5622441969 486294.6350481571 549245.3830746597 506665.77188814373 570402.2803808519 441484.83121149277 468970.89758298045 500936.4800617375 356510.8442152092 465973.80706334644 0.7930908489754606 1.0436093782027713 1.1787044137439961 1.0873267213907272 1.2241080329721388 0.9474455956952007 1.0064318862438262 1.0750314126425524 0.7650877341411244 1.0 18.82988933600765 1.2604345900529716 24.999646232630553 0.8825437871978671 1.0522073400305973 0.21088758821274634 0.12457258587787748 292.9020796926557 334757.7145733933 0.08194866014697678 0.029872290296776283 18.215227093093976 -1.2604345900529716 0.16966355283273027 RLSSEVEALR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLSSEVEALR 10 1 P15924 P15924 DSP Desmoplakin 0 ; 100.09 0.0081796 0.0 221970.0 250910.0 212814.0 211640.0 244370.0 258970.0 267750.0 230280.0 276370.0 241110.0 False True 220774.93818318567 259261.38767170222 242776.36138755205 238433.60230006196 275489.0710055319 241068.01344980806 254797.90959567178 247464.66293814668 208262.31666826757 225722.15337534348 0.9780827219739867 1.1485863651167096 1.0755539842110662 1.0563145829270075 1.2204786587669716 1.0679856179156089 1.12881215151257 1.0963242164655789 0.9226489892729195 1.0 17.784188492418576 1.2498194366678101 24.642886635022524 0.9613245111122514 1.100719982590216 0.4263906422006599 0.06256997763450022 132.63187632197852 290304.7182920562 0.03965806615067648 0.014180619307432267 17.775402219316362 -1.2498194366678101 0.13939547147796472 RLT(ph)PLQLEIQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RLTPLQLEIQR 11 1 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 RLT(1)PLQLEIQR 56.404 0.090859 105490000.0 90022.0 190170.0 175420.0 190160.0 198580.0 138140.0 156550.0 127290.0 84716.0 173830.0 True False 89537.33155438451 196499.69348980757 200117.61122202655 214234.2365024559 223867.98592412536 128590.70694658255 148977.07842092428 136789.02616552313 63838.876936241104 162736.0205766495 0.5501998342906018 1.2074751047341434 1.2297069235988238 1.3164524715752803 1.3756511012795867 0.7901797431873153 0.9154523865892082 0.8405577676092602 0.39228485930791623 1.0 17.31217409210754 2.7129788030587556 23.547679971666724 0.7938886266519202 1.155116140495401 0.31015948170625773 0.25877231225865344 449.79862502140577 414031.84815580293 0.08397980407405282 0.07921349253481054 516.391164760474 -2.7129788030587556 0.36122751384348073 RLT(ph)VMS(ph)LQESGLK ddPTM_BT-474_Trastuzumab_2h_R1 4 RLTVMSLQESGLK 13 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 2 RLT(1)VMS(1)LQES(0.001)GLK;RLT(1)VMS(1)LQESGLK;RLT(1)VMS(1)LQESGLK;RLT(1)VMS(1)LQESGLK 67.456 0.01823 1909660000.0 835660.0 1505950.0 1494540.0 1423450.0 1543920.0 1403430.0 1479570.0 1368170.0 1159730.0 1440260.0 True False 831160.8994105546 1556074.635384001 1704958.241225446 1603658.6240503816 1740529.0604692108 1306414.1874188646 1407997.5465937206 1470269.7928264874 873930.0810858278 1348341.3737313785 0.6164320962060321 1.154065777183522 1.2644855927747525 1.1893565348458026 1.2908667599900894 0.9689046207960783 1.0442441165305567 1.0904284489599887 0.6481519429069565 1.0 20.36275437432957 1.2673357892461918 24.02518098957073 0.8240762051239141 1.0914389030536737 0.2066192097466547 0.19697706946567967 167.6672546477839 139990.4629933762 0.12841721692673347 0.046871723374393354 18.50698995515291 -1.2673357892461918 0.26736269792975964 RLTAEDLFEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLTAEDLFEAR 11 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 113.95 0.0021221 246820000.0 171160.0 267960.0 248100.0 284120.0 254770.0 225140.0 253350.0 198906.0 267290.0 241400.0 False True 170238.49357766364 276878.88661475916 283030.3234761419 320089.56286852 287213.44935990206 209576.60172255352 241094.49260901404 213749.37574420255 201419.96100250128 225993.64532706235 0.7532888516900165 1.2251622660188286 1.2523817785519367 1.4163653248093777 1.2708917055797797 0.9273561715385856 1.0668197871674554 0.9458202925788481 0.8912638260735272 1.0 17.78592268077627 2.734704249609806 24.921895567225167 0.9699200299937324 1.2026766213626627 0.29777356907021335 0.1655643061599459 400.6144945498236 2588973.700672956 0.05407752729638561 0.05280564294064236 542.8805091473514 -2.734704249609806 0.23275659136893034 RLTLEDLEDSWDR ddPTM_BT-474_Trastuzumab_2h_R1 6 RLTLEDLEDSWDR 13 1 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;;;; 228.03 1.2997e-11 1027361000.0 526501.0 749578.0 666275.0 780625.0 712356.0 717557.0 718567.0 614061.0 821580.0 776123.0 False True 523666.3771157604 774527.2506005298 760080.7286338818 879452.0449607151 803070.3141351913 667953.9735374894 683807.1690174906 659885.3499585764 619112.6176079725 726590.1656676691 0.7207176780799937 1.0659754111711806 1.0460927831791365 1.210382532706839 1.1052589920443583 0.9192994966064556 0.9411181176518334 0.9081947171032831 0.8520795447858357 1.0 19.470782313575153 2.71746251301462 23.069557097577164 0.9191243820802553 1.0426518216973546 0.15382240397798164 0.12160993588518532 515.0956891459734 563225.3901141005 0.0400403759146771 0.03780100205516819 521.7500664084964 -2.71746251301462 0.12352743961709933 RLTVSSLQESGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLTVSSLQESGLK 13 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 67.964 0.082928 375780000.0 321550.0 329490.0 311560.0 284540.0 278830.0 353030.0 351270.0 301550.0 403810.0 377990.0 False True 319818.8105275632 340456.8754690888 355424.9398719338 320562.73482545634 314337.34774510964 328625.86704323173 334277.7281182886 324053.19223987334 304296.4362767781 353866.3545864802 0.9037841727035504 0.9621058093158887 1.004404446100209 0.9058864474416007 0.8882939665525331 0.9286722594106357 0.9446439984635375 0.9157502204993583 0.8599190975145735 1.0 18.432845072089354 3.688829267280773 24.999202153505507 0.9174155996051667 0.9572991205889302 0.1366347253040382 0.04133250988175734 621.3701465314343 312352.95763072674 0.010615254828519445 0.016445126288623896 4884.602948506004 -3.688829267280773 0.039883520983763465 RLVELLMHNDYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RLVELLMHNDYK 12 1 C9JYI4;P52294;Q5TFJ7;O60684;O15131 C9JYI4;O60684;O15131 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 0 134.68 9.1577e-05 351750000.0 226690.0 207060.0 219080.0 198380.0 203320.0 216190.0 250920.0 172110.0 334480.0 248430.0 False True 225469.52622762657 213951.8669295867 249924.5597225038 223494.88765964008 229211.5968279443 201245.29415651978 238782.04099251554 184953.72215687172 252051.88580237408 232574.98470837655 0.9694487414901501 0.9199263936225076 1.0745977691275856 0.9609584106385219 0.9855384796234661 0.8652920880930477 1.0266884088670238 0.7952434024182925 1.083744608726598 1.0 17.827336406252435 RLVEVDSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLVEVDSSR 9 1 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 157.97 0.00010786 424110000.0 268530.0 377480.0 361530.0 352580.0 367440.0 399590.0 317270.0 324290.0 423850.0 370460.0 False True 267084.2643164874 390044.1936085212 412430.2815249077 397216.5918491584 414231.30601249164 371967.28383368213 301922.4380109017 348490.1665112533 319397.8467990201 346816.92563323735 0.770101585523343 1.1246400183507685 1.1891872946277633 1.1453206648548038 1.1943803067170538 1.0725176781799903 0.8705527778369961 1.0048245652225907 0.9209407707419296 1.0 18.403814782256305 2.379773588125611 7.145054479695927 0.9532096981651554 1.0996920307202709 0.22824116422099183 0.11878173026035421 0.3173310949584599 20.194635780253105 0.04153806515620904 0.03465745050229807 239.7582655130416 -2.379773588125611 0.14648233255511545 RLVIQDK ddPTM_BT-474_Trastuzumab_2h_R1 2 RLVIQDK 7 1 P46777;A0A2R8Y4A2;R4GNJ2 P46777 RPL5 60S ribosomal protein L5 0 ; 153.78 0.0027629 594200000.0 684710.0 672270.0 593340.0 564410.0 537840.0 646710.0 654430.0 586920.0 943740.0 732050.0 False True 681023.597438432 694646.1005542031 676877.1145962666 635864.2481297385 606330.7359725636 602004.4598915909 622772.7207346235 630718.950719372 711167.9224681085 685329.9422604628 0.99371639183336 1.0135936834497736 0.9876660464646916 0.9278220736021415 0.88472821422725 0.8784155233404297 0.9087195558397708 0.9203143067688474 1.0377015195373236 1.0 19.386439194570436 3.800301218980619 3.9432187406513926 0.926738780633453 1.0026024825734483 0.24773897270853795 0.04730725394944423 0.27043917897179226 8.478847911736036 0.012570801785738779 0.023407693069721812 6313.951171462924 -3.800301218980619 0.07586370193999525 RLVPDSDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RLVPDSDVR 9 1 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 103.7 0.0054193 665320000.0 502000.0 688070.0 670640.0 698970.0 613090.0 618310.0 678630.0 530150.0 760410.0 602740.0 False True 499297.28777744324 710971.9940029016 765060.282692622 787459.530332991 691163.3774308695 575567.6850451819 645802.0742816459 569712.4850471528 573017.1444719664 564272.6171683247 0.8848511740354414 1.2599796133485173 1.3558345016490525 1.395530292227682 1.2248749210963268 1.0200170405814462 1.1444859357564763 1.0096404959470247 1.01549699035109 1.0 19.106032815098303 2.771124259216741 6.689924958890208 1.0449133674346194 1.2437906886432089 0.32035484158350047 0.13402453042191537 0.24789995067382506 37.719848660890825 0.04263375518831512 0.0445675241450449 590.369971142436 -2.771124259216741 0.19887732120858947 RMDEISDHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RMDEISDHAK 10 1 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 103.31 0.0018378 220180000.0 161260.0 191010.0 199300.0 174270.0 182790.0 227310.0 228190.0 188790.0 256670.0 246850.0 False True 160391.79407767046 197367.6523820169 227359.70765334557 196332.56413169453 206067.22301878757 211596.59473018395 217151.5779295479 202878.46845619546 193417.11770179207 231095.82166108215 0.6940488708311482 0.8540511505719479 0.9838330525369002 0.8495721070181428 0.8916960139634167 0.9156227629269076 0.9396603381605729 0.8778976054085937 0.8369563599702443 1.0 17.818131649762343 4.684900741277396 3.475887959706955 0.905493407368726 0.6792015469939491 0.6249359021493353 0.050499171340500464 0.15530409761631958 3.206533332656461 0.011526187077543376 0.08410613933121429 48406.172183279035 -4.684900741277396 -0.2262918603747769 RMEDEGGFPVPQENGQPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 RMEDEGGFPVPQENGQPESPR 21 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR 221.74 2.5669000000000003e-25 12316650000.0 3751610.0 4397450.0 4020890.0 4225130.0 4376080.0 4050810.0 3849330.0 3553990.0 3974550.0 4039330.0 True False 3731411.7486030515 4543816.464935335 4586996.361797598 4760031.0247876635 4933347.848941724 3770787.0392810623 3663123.2020313996 3819206.780595553 2995075.4087414057 3781536.501155602 0.986744871420061 1.2015794277132557 1.2129980393937374 1.2587558055655532 1.304588187218116 0.9971573824895635 0.9686864587746234 1.0099616331690675 0.7920260475672095 1.0 21.850541113875003 2.6043478300739653 5.538596154881057 0.9552333793027894 1.1974522561380403 0.6109545580618561 0.09594018016780963 0.1617063326985763 6.635309879970429 0.03185770201072872 0.029887630146505022 402.1127373611793 -2.6043478300739653 0.2422188768352509 RMEDEGGFPVPQENGQPES(ph)PRR ddPTM_BT-474_Trastuzumab_2h_R1 5 RMEDEGGFPVPQENGQPESPRR 22 2 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RMEDEGGFPVPQENGQPES(1)PRR;RMEDEGGFPVPQENGQPES(1)PRR;RMEDEGGFPVPQENGQPES(1)PRR;RMEDEGGFPVPQENGQPES(1)PRR;RMEDEGGFPVPQENGQPES(1)PRR 192.22 5.9885e-18 5238200000.0 760200.0 855620.0 733344.0 862570.0 874500.0 857930.0 871890.0 724533.0 875630.0 849560.0 True False 756107.1676661603 884098.794466788 836592.4608596835 971771.2735587046 985862.3914324082 798623.3184499881 829713.3497567518 778601.3315640258 659842.7193408665 795340.3534550914 0.950671199294119 1.1115980606618476 1.0518672380011729 1.2218307160414632 1.239547807614259 1.004127748555238 1.0432179709634226 0.9789536368696139 0.8296356603489305 1.0 19.601212845731066 1.916151037188327 1.5267597714280896 0.9211808109396098 1.1105682638231826 0.3940524001343323 0.09108139367208534 0.3978750183351275 1.7295843700970706 0.06544933888963349 0.02940617228901439 82.442478029699 -1.916151037188327 0.18938745288357284 RMEEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RMEEEER 7 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 102.46 0.013781 417060000.0 410060.0 475980.0 380590.0 455220.0 461980.0 446150.0 487450.0 420970.0 550690.0 494460.0 False True 407852.28252194857 491822.70656401356 434173.7638524171 512850.8053252423 520810.41463001055 415308.70062413317 463870.1812601688 452384.919042346 414979.8283679424 462903.1394714957 0.8810747816219185 1.0624743377751462 0.9379365288991572 1.107900901062742 1.1250958790744616 0.8971827261709612 1.0020890802118498 0.9772777077270236 0.8964722702933747 1.0 18.820350821652053 2.715729955549238 24.99886679179589 0.9591885222691057 1.0250977484984083 0.1653452972903503 0.07629154666801397 1555.6256416615913 1703359.6125198624 0.02451250636235464 0.023121321016381053 519.6727633566142 -2.715729955549238 0.06590922622930262 RMEEEQHHWDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RMEEEQHHWDDR 12 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ;;; 164.68 2.3035e-05 2068245000.0 577435.0 695620.0 661949.0 709880.0 710867.0 667389.0 688158.0 342406.0 767077.0 635500.0 False True 574326.1541190601 718773.2911888309 755145.6654361482 799750.7352143632 801391.698811185 621253.9692947211 654869.1685211512 367958.0744224378 578041.15165519 594941.8459210776 0.9653483917069228 1.2081404192976875 1.2692764353582258 1.3442502669755971 1.3470084585670479 1.0442263786856472 1.100728034195166 0.6184773805123291 0.9715926953503795 1.0 19.18238912991357 2.1285730463479644 2.312381600117329 0.831263726458512 1.2240444994672994 0.46864439422129045 0.15271282110408965 0.22166225103206658 2.340743661206243 0.0744838700658366 0.0459202473593715 134.45378927856933 -2.1285730463479644 0.39278077300878744 RMEEEQHHWDDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 RMEEEQHHWDDRR 13 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ;; 105.14 0.00088668 958920000.0 403608.0 579355.0 499448.0 673687.0 631566.0 490665.0 615937.0 312105.0 667940.0 544716.0 False True 401435.01937306474 598638.4809475072 569765.9371201608 758975.7051253159 711992.1865150374 456746.48345117114 586141.7742021643 335395.8599370775 503335.1369374487 509951.7585251696 0.7872019512866357 1.1739119846920978 1.1172937980799982 1.4883284397731031 1.3961951784894095 0.8956660621626773 1.1494063201141687 0.6577011537465332 0.987025004861525 1.0 18.96000124891629 2.3256135008421235 1.9873713402451143 0.8758328818993716 1.193975751263835 0.21152699679482345 0.21617049764506543 0.43206949444321363 3.486695166424367 0.10071593312894118 0.07159489043942743 211.6476744317496 -2.3256135008421235 0.31814286936446334 RMEEETKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RMEEETKR 8 2 F5GWE5;Q00169 F5GWE5 PITPNA Phosphatidylinositol transfer protein alpha isoform 0 89.88600000000002 0.007642399999999999 27501000.0 25619.0 33576.0 33944.0 31787.0 27163.0 27713.0 31330.0 28215.0 32980.0 30543.0 False True 25481.07015053847 34693.556862879406 38723.020153462916 35811.23094080547 30622.047042285285 25797.265539384964 29814.448207777397 30320.54657286694 24852.520909358715 28593.7195908221 0.8911421988875238 1.2133278691735931 1.3542491395870049 1.2524159659277074 1.0709361174582628 0.9022004100391776 1.0426921937552722 1.0603918275326134 0.8691601255450437 1.0 14.803410683540386 3.039495321739247 5.378647693994779 0.9902915984775513 1.191369622850949 0.37160554576894733 0.12297264076447652 0.2087696695233084 14.923090973895759 0.03732256741741363 0.044250335143775826 1095.2047576551734 -3.039495321739247 0.2010780243733976 RMEELHNQEMQK ddPTM_BT-474_Trastuzumab_2h_R1 9 RMEELHNQEMQK 12 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;;;;;;; 166.7 2.9444e-05 4577030000.0 3485411.0 3745684.0 3590921.0 3382538.0 3273321.0 3792541.0 4221185.0 3538565.0 5380202.0 4015636.0 False True 3466645.934441567 3870356.827626207 4096491.4639551356 3810766.9639805662 3690159.026856398 3530371.5673512295 4016990.1550573492 3802630.688768983 4054323.3081132057 3759354.6725210566 0.9221385680316253 1.029526917456477 1.0896794319244139 1.0136758289488637 0.9815937436894574 0.9390897839877744 1.068531837237778 1.0115115545133988 1.078462571714294 1.0 21.842053600733127 RMEELHNQEVQK ddPTM_BT-474_Trastuzumab_2h_R1 11 RMEELHNQEVQK 12 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ;;;;;;;;;; 200.93 1.0013e-07 8171267000.0 3480357.0 3552498.0 3349012.0 3467510.0 3230856.0 3649668.0 3754731.0 3537851.0 4989931.0 3972749.0 False True 3461619.144616016 3670740.748399612 3820523.779465863 3906496.410468186 3642286.360816173 3397375.041554363 3573100.3170646746 3801863.4064633693 3760229.3666997333 3719204.757578462 0.930741749983629 0.986969254897812 1.0272421198862332 1.0503579837888968 0.9793185904579317 0.913468137141866 0.9607162148800555 1.0222248180115594 1.0110304787704085 1.0 21.826562745779402 1.7038412887548722 9.675313565463513 1.0121094818505887 0.9809395255562092 0.12932311083416315 0.03839129917077468 0.27857647556437637 52.62422149104168 0.020425043388952867 0.010999356294173113 50.56398441018177 -1.7038412887548722 -0.031169956294379464 RMGESDDSILR ddPTM_BT-474_Trastuzumab_2h_R1 5 RMGESDDSILR 11 1 Q8WVC2;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 ;;;; 202.18 6.5605e-08 845340000.0 800338.0 1400880.0 1322290.0 1646720.0 1449680.0 1105100.0 1157570.0 862449.0 1136840.0 1111910.0 False True 796029.0691339116 1447507.443950158 1508456.9384492857 1855194.5831579943 1634288.155073452 1028707.0381255852 1101573.9167531729 926809.3238072847 856681.0148755411 1040946.9518459565 0.764716268895623 1.3905679260439066 1.4491198958547056 1.7822181811168158 1.5700013840045333 0.9882415586128902 1.0582421273242637 0.8903521184857052 0.8229823944018967 1.0 19.989465118020263 2.675315216110169 6.816988875278559 0.9470204990998329 1.4157321417934663 0.4367704219241818 0.24875514586363773 0.24292895044530158 22.067630229434375 0.08488159643752884 0.08014688150447531 473.49480244236383 -2.675315216110169 0.4687116426936334 RMHS(ph)QPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RMHSQPR 7 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 1 RMHS(1)QPR;RMHS(1)QPR;RMHS(1)QPR 109.66 0.0042738 256486000.0 292206.0 213381.0 161484.0 184170.0 148819.0 134627.0 180040.0 111014.0 247581.0 141536.0 True False 290632.7953631387 220483.2575934618 184219.54355590986 207485.9031166247 167770.2175306798 125320.55236786992 171330.77738040988 119298.42839766959 186567.97996543164 132503.0513049339 2.193404548052975 1.663986266143079 1.3903041608601072 1.565895283717883 1.2661611629198208 0.9457937091536508 1.2930326939122359 0.9003447635566063 1.4080278010811709 1.0 17.015666057145175 7.999999999303749 0.4134114536913798 1.0700419080983372 20.88609000928426 0.7808745128921664 0.1725191425627557 31.78888976899302 0.4128790186570213 0.11107148622080075 518.2882172583785 99999999.83968227 -7.999999999303749 19.816048101185924 up RMKVT(ph)NEDFK ddPTM_BT-474_Trastuzumab_2h_R1 3 RMKVTNEDFK 10 2 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 1 RMKVT(1)NEDFK;RMKVT(1)NEDFK;RMKVT(1)NEDFK 87.913 0.020182 45099470000.0 2777370.0 7808550.0 7986570.0 10409900.0 8388890.0 5119830.0 6580410.0 3891140.0 1520351.0 5597100.0 True False 2762416.948514814 8068452.866381849 9111009.635489114 11727792.272648899 9457165.416653426 4765908.202883462 6262090.428692643 4181516.6256085588 1145680.8677096546 5239888.2860816 0.5271900463703503 1.5398139093563492 1.738779366668969 2.238176012988813 1.8048410386484623 0.9095438571739893 1.1950809037906889 0.7980163693023131 0.21864604838100418 1.0 22.32110462329413 2.2180647412028165 1.446301995219305 0.6706957791550954 1.5881892689313943 0.3759318995662002 0.47075227375168754 0.44155530894226985 1.8020101278428218 0.2911554535429898 0.16858793285850893 165.22080780467627 -2.2180647412028165 0.917493489776299 RMPS(ph)SGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RMPSSGDK 8 1 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 RMPS(0.966)S(0.034)GDK 67.51899999999999 0.036068 278830000.0 223730.0 552190.0 421850.0 566100.0 488960.0 369020.0 404840.0 340130.0 285630.0 539200.0 True False 222525.46253873964 570569.3103440962 481242.8132140688 637768.2019564599 551226.1577070216 343510.5159796427 385256.34256101545 365512.22774514364 215240.3137459104 504787.79436765524 0.44082972096719575 1.1303151873132056 0.9533566749903668 1.263438238944324 1.0919958126117915 0.6805047978823583 0.7632045522091592 0.7240908592154426 0.4263976192521467 1.0 18.945317501203107 2.7304696184450346 24.55776096013592 0.7076459547723376 0.9992731674204154 0.2188371172306227 0.24045487385607744 659.4403581965416 2001525.349226559 0.07520099920672661 0.07205725316380444 537.6128225019827 -2.7304696184450346 0.2916272126480778 RMS(ph)ADMSEIEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RMSADMSEIEAR 12 1 O43318;O43318-3;Q9UG54;O43318-2;O43318-4 O43318 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 RMS(0.899)ADMS(0.101)EIEAR 88.95100000000002 0.010272 282140000.0 212760.0 252180.0 241640.0 288010.0 255480.0 275660.0 277000.0 256800.0 312390.0 301670.0 True False 211614.52379985797 260573.65885397088 275660.81162746815 324472.0364696694 288013.86365140264 256604.2730338421 263600.4517572402 275963.72000397777 235405.67031153914 282417.1623273193 0.7492976774357585 0.9226551839366193 0.9760766992906026 1.1489104762465137 1.0198171431153917 0.908600139308955 0.9333726377851262 0.9771492558378514 0.8335388273560577 1.0 18.107468237451616 4.709587474442462 2.6573776909356157 0.9764774914950166 0.7122282731297805 0.43605467589836 0.07689440381872273 0.41970175961260375 4.0966378061332085 0.020033106838788964 0.23828841433171094 51237.44609767092 -4.709587474442462 -0.26424921836523607 RMS(ph)DEFVDSFK ddPTM_BT-474_Trastuzumab_2h_R1 16 RMSDEFVDSFK 11 1 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(0.755)DEFVDS(0.245)FK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(0.976)DEFVDS(0.024)FK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK 221.78 4.9985e-12 11266550000.0 11096680.0 10101160.0 9509680.0 8664140.0 9010500.0 11995080.0 11933120.0 11318310.0 14764890.0 12024290.0 True False 11036936.70783706 10437371.00431984 10848560.284379655 9761019.235645702 10157933.765582282 11165888.352981128 11355869.396654736 12162939.765413623 11126280.698889669 11256889.517687393 0.9804606050805835 0.927198493679814 0.9637262822322143 0.8671151316097307 0.9023748300648793 0.9919159582615358 1.0087928267228545 1.0804885085087312 0.9883974326484678 1.0 23.42430490394445 2.4821386725944046 2.907324986289596 1.0312575977498073 0.9271306466723114 0.5604471573587915 0.03783077186456157 0.178540901062701 3.0826279191451658 0.014277109220345922 0.0122667533514068 303.48600768582156 -2.4821386725944046 -0.10412695107749592 RMS(ph)DEFVDSFKK ddPTM_BT-474_Trastuzumab_2h_R1 9 RMSDEFVDSFKK 12 2 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 RMS(0.992)DEFVDS(0.008)FKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(0.998)DEFVDS(0.002)FKK;RMS(0.999)DEFVDS(0.001)FKK 176.28 2.0016e-05 4483308000.0 5720102.0 5703941.0 5365702.0 4904333.0 4859155.0 6776091.0 6917810.0 6426159.0 10211300.0 7503900.0 True False 5689305.606395075 5893793.228079851 6121146.202082142 5525221.054947407 5477939.586781866 6307675.778372475 6583169.101699481 6905711.615954209 7694861.939409784 7024994.6775879925 0.809866180332606 0.8389747606333368 0.8713381978224952 0.78650893111345 0.7797784679123341 0.8978904707922417 0.9371066319383731 0.9830201918850793 1.0953548426106121 1.0 22.7440657016157 2.033272350427757 1.3411303327357873 1.039436396866518 0.8209921629138205 0.8517471463401654 0.03781210857116545 0.15997343954822005 0.5367746603863515 0.026975403626980476 0.013008395117680668 107.96235527480184 -2.033272350427757 -0.2184442339526974 RMS(ph)DPESVSSVFSDTPIVV ddPTM_BT-474_Trastuzumab_2h_R1 1 RMSDPESVSSVFSDTPIVV 19 1 Q86WK6 Q86WK6 AMIGO1 Amphoterin-induced protein 1 1 RMS(0.779)DPES(0.055)VS(0.055)S(0.055)VFS(0.055)DT(0.001)PIVV 66.965 0.027998 15725000.0 31589.0 37102.0 39852.0 37581.0 45641.0 48116.0 38168.0 34714.0 33371.0 39005.0 True False 31418.928333867836 38336.91764136738 45462.81520020634 42338.75074673328 51453.110814598636 44789.854172880834 36321.668024080675 37304.53495412026 25147.16419849028 36515.66750613941 0.8604232232256289 1.0498758549305378 1.2450221591201267 1.159468075987241 1.4090694304286722 1.2265927814506 0.994687226187879 1.0216035335475715 0.6886677942902801 1.0 15.15622798281808 1.7277574820813846 1.948128069184232 0.8606651489890677 1.1628394740959591 0.3485773921991332 0.157455024855965 0.3433480966319221 2.6546106740152866 0.1154236526441245 0.04705124627325698 53.426593229075856 -1.7277574820813846 0.30217432510689146 RMS(ph)FSGIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RMSFSGIFR 9 1 A0A494C0H7;A0A494C094;F8WDA1;A0A494C188;A0A494C155;A0A494C1K7;Q9UGJ0-3;Q9UGJ0;A0A494C1R6 A0A494C0H7 PRKAG2 5-AMP-activated protein kinase subunit gamma-2 1 RMS(0.949)FS(0.051)GIFR 50.452 0.094667 0.0 212110.0 219890.0 180770.0 200350.0 208680.0 234110.0 210760.0 176090.0 300400.0 213520.0 True False 210968.0233276365 227208.90572368808 206220.8447189927 225714.2894576516 235254.161056735 217926.52673566245 200564.73361861345 189230.72996690197 226370.44515377056 199892.97079633104 1.0554049123747815 1.1366528038406563 1.031656310361754 1.1291757211794589 1.176900618963901 1.0902160584611333 1.0033606125298267 0.9466602512987177 1.1324582562956511 1.0 17.60886821527585 2.2880096878997627 5.237340166067262 1.0081019791710228 1.1071253164323558 0.318381275352726 0.05833096988078866 0.20060315076092416 11.995334361458498 0.0208436232490967 0.01696379563251937 194.09291738314835 -2.2880096878997627 0.09902333726133294 RMS(ph)GEPIQTVESIR ddPTM_BT-474_Trastuzumab_2h_R1 6 RMSGEPIQTVESIR 14 1 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR 199.31 1.2758e-08 1834997000.0 479849.0 641104.0 582354.0 635285.0 600638.0 637041.0 577106.0 514018.0 595646.0 567344.0 True False 477265.5463002353 662442.7590844489 664344.3812882903 715712.0158627621 677125.6890396554 593003.8551032123 549189.1780209898 552376.6332905166 448857.02454747976 531135.6201923643 0.8985756709884782 1.2472196062552316 1.2507999012524917 1.347512741855929 1.2748640145701715 1.1164829330942647 1.0339904859366933 1.03999169381722 0.8450892907256243 1.0 19.01872076031955 2.1412919635456755 1.5467301689686521 0.9569929013918185 1.2145361976996631 0.43554082238347436 0.12108324924071559 0.3771804151831179 1.7344611148133784 0.07429053957846518 0.040680135525476155 138.4496823117832 -2.1412919635456755 0.25754329630784467 RMS(ph)NELENYFK ddPTM_BT-474_Trastuzumab_2h_R1 2 RMSNELENYFK 11 1 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 RMS(1)NELENYFK;RMS(1)NELENYFK 166.3 1.2606e-05 315200000.0 361860.0 380080.0 355060.0 326740.0 317970.0 415920.0 359950.0 349640.0 422300.0 363310.0 True False 359911.7859664251 392730.7330367881 405049.36176315515 368105.2504985927 358461.5947441539 387168.4293703678 342537.84335746855 375731.9122359456 318229.8235300842 340123.2447546602 1.0581805022648154 1.1546718405561347 1.1908899730017801 1.0822701952173739 1.0539167794977424 1.1383180518862877 1.0070991872506394 1.104693425193479 0.9356309174329785 1.0 18.37569808073637 1.834351724916892 0.6569364142090428 0.9830789141039782 1.1257678968025104 0.43488358380057346 0.0557756721597555 0.6748847269865615 0.585400294911542 0.05019250412748829 0.027269496152982308 68.28915280829389 -1.834351724916892 0.14268898269853225 RMS(ph)PKPELTEEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RMSPKPELTEEQK 13 2 P41208 P41208 CETN2 Centrin-2 1 RMS(1)PKPELTEEQK;RMS(1)PKPELTEEQK 266.28 1.0959e-24 1296050000.0 1323190.0 881840.0 838070.0 662170.0 737130.0 1151490.0 971640.0 1133670.0 1878740.0 1108550.0 True False 1316066.0920602295 911191.5113164627 956062.971364973 746000.654106181 830999.1361881883 1071890.2066158992 924638.0611747481 1218270.2120596159 1415749.7008262149 1037801.3899225963 1.2681290513191426 0.8780018220870018 0.9212388619331877 0.7188279581720554 0.8007304136007833 1.0328471488131707 0.8909585881781403 1.1738953367083849 1.364181735131235 1.0 19.985098942509556 1.677036648715857 4.785814977365618 1.2085171981235205 0.9185204062573198 0.32940773134914614 0.16116774412646584 0.1629274826927095 8.585890076283192 0.08627085150762515 0.041574870732500026 47.53753396476896 -1.677036648715857 -0.28999679186620075 RMS(ph)PKPELTEEQKQEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 RMSPKPELTEEQKQEIR 17 3 P41208 P41208 CETN2 Centrin-2 1 RMS(0.965)PKPELT(0.035)EEQKQEIR;RMS(0.994)PKPELT(0.006)EEQKQEIR;RMS(1)PKPELTEEQKQEIR 163.95 1.8944e-09 610940000.0 646640.0 502950.0 452740.0 405844.0 468500.0 636970.0 596220.0 660300.0 1165940.0 619460.0 True False 643158.5620884576 519690.38671030523 516481.8567133748 457223.80878787674 528160.6979829423 592937.7631660962 567378.5608184183 709574.938935462 878609.7097955646 579925.5324536123 1.1090364643324326 0.8961329647128009 0.8906003060913474 0.7884181385382435 0.9107388249459243 1.0224377613750344 0.9783645124536784 1.2235621631165554 1.5150388465881932 1.0 19.145508131819575 1.7270722767384445 3.1079312210282226 1.2895600849833875 0.9296028472310178 0.4922727759727764 0.14115303981253233 0.16250557440293634 3.380904268369848 0.07928122674115373 0.03693971322175675 53.34236622487656 -1.7270722767384445 -0.35995723775236965 RMSDEFVDS(ph)FK ddPTM_BT-474_Trastuzumab_2h_R1 1 RMSDEFVDSFK 11 1 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 RMS(0.378)DEFVDS(0.622)FK 173.66 1.2624e-05 1205900000.0 1590900.0 1456800.0 1514300.0 1303400.0 1357500.0 1804800.0 1925800.0 1785000.0 2210600.0 1858900.0 True False 1582334.7711656066 1505288.7073458051 1727500.2774684462 1468410.3063593863 1530369.5784671186 1680038.424042216 1832641.6967295804 1918205.7640463412 1665827.250522389 1740263.4105156413 0.9092501523644398 0.8649775075715618 0.9926659763285988 0.8437862322947394 0.879389619536774 0.9653931777744034 1.0530829331098603 1.1022502412309958 0.9572270728997303 1.0 20.73087426176756 2.4488569606185524 3.4066948274529887 1.0437525459328993 0.8991795302116308 0.578976557521948 0.05154671702075169 0.15336343377789574 3.7504279509699 0.01867225512345416 0.01584446512903875 281.0974854262777 -2.4488569606185524 -0.14457301572126857 RNAEQYKDQADK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNAEQYKDQADK 12 2 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 120.84 0.00021762 303170000.0 279380.0 247632.0 232121.0 232526.0 223372.0 283571.0 287252.0 318270.0 447170.0 347100.0 False True 277875.84912203596 255874.28142329492 264801.61916809913 261963.76775857215 251817.1001704287 263968.40422433265 273356.5233507971 342020.9235423134 336970.94527101103 324947.7808327397 0.855140011757972 0.7874320014359507 0.8149051471885582 0.80617189348775 0.7749463606894008 0.8123409969068385 0.8412321593650207 1.0525411888206178 1.0370002971168466 1.0 18.309848369849895 1.7991416621412994 4.216156688385849 1.0342364380175084 0.8078438062114818 0.9447647923907609 0.024057068780959763 0.04131580685227616 1.3255918831017812 0.011768311782066023 0.006308519934128917 62.97115544275 -1.7991416621412994 -0.22639263180602665 RNAET(ph)PEATTQQETDTDLPEAPPPPLEPAVIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNAETPEATTQQETDTDLPEAPPPPLEPAVIAR 33 1 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 RNAET(0.997)PEAT(0.001)T(0.001)QQET(0.001)DTDLPEAPPPPLEPAVIAR;RNAET(0.877)PEAT(0.049)T(0.049)QQET(0.024)DTDLPEAPPPPLEPAVIAR 185.43 4.9854999999999996e-20 502700000.0 142783.0 191817.0 184595.0 200738.0 219335.0 210400.0 207830.0 159635.0 223660.0 213230.0 True False 142014.27219268246 198201.51288917472 210584.37147149668 226151.41021786898 247266.0121496024 195855.54322832567 197776.46891230086 171547.77431010528 168541.98989045405 199621.4788446127 0.7114177943908919 0.9928867075644535 1.0549184020193418 1.1329011864194607 1.238674383041099 0.9811346171860671 0.9907574578497738 0.8593653113031977 0.8443078914451324 1.0 17.60690743436778 1.9621970806214184 2.8675460689101824 0.8885002933611623 1.0337449263902643 0.1261339545318838 0.13275738033535137 0.4858408605173347 7.442205407012409 0.07120660188432844 0.039632875592353116 91.66363606614337 -1.9621970806214184 0.14524463302910195 RNDDISELEDLS(ph)ELEDLKDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNDDISELEDLSELEDLKDAK 21 2 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK 82.34200000000001 0.0021967 68057000.0 64634.0 44715.7 36890.0 35331.1 38054.5 54226.0 56679.0 54520.0 103702.0 57654.0 True False 64286.01772551247 46204.03504328852 42083.791346371894 39804.01363742072 42900.51500830709 50477.48425427373 53937.220235193585 58588.559246950426 78146.03163560688 53974.47235992724 1.1910448572210763 0.8560349554726208 0.7796980592183899 0.7374599861206383 0.7948297247303544 0.9352103327229594 0.9993098195664565 1.085486465828777 1.4478331740696284 1.0 15.719989614463518 1.8071215669044007 1.8030214622098513 1.219995068662484 0.8661577011143176 0.4176487096982835 0.15747717756133098 0.3048113941353383 1.9124644209106831 0.10831964269551866 0.04637656442272208 64.13890879014565 -1.8071215669044007 -0.3538373675481665 RNDFQLIGIQDGYLSLLQDSGEVR ddPTM_BT-474_Trastuzumab_2h_R1 7 RNDFQLIGIQDGYLSLLQDSGEVR 24 1 P63241;P63241-2;I3L397;I3L504 P63241 EIF5A Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A 0 ;;;;;; 337.4 6.941399999999997e-87 4189999000.0 1402900.0 1651467.0 1530674.0 1787590.0 1783569.0 1796236.0 1702801.0 1618834.0 2255146.0 1917425.0 False True 1395346.9422768443 1706435.0807621179 1746179.594343088 2013898.7107142692 2010695.9401083002 1672066.4332047305 1620430.0102984877 1739639.613352491 1699395.4857082057 1795053.2949098665 0.7773289774925082 0.9506319871398591 0.9727731200486543 1.1219158319282054 1.1201316115849704 0.9314856767462654 0.9027197214107523 0.9691297847732382 0.9467103236026961 1.0 20.775595247445345 4.757130761883897 2.3552309373898885 0.9944489483403949 0.7194592252834897 0.4725247872169581 0.06911865572456669 0.612621504649738 3.917692894554773 0.019455970197053456 0.351380440358663 57165.07292893546 -4.757130761883897 -0.27498972305690517 RNDLDDPER ddPTM_BT-474_Trastuzumab_2h_R1 4 RNDLDDPER 9 1 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;;; 101.95 0.005873399999999999 1583560000.0 929650.0 1087760.0 1020910.0 1060890.0 1029680.0 985660.0 1061600.0 983130.0 1208210.0 1055850.0 False True 924644.8676938241 1123965.4340351948 1164645.2540912048 1195198.565224499 1160803.6446084857 917523.6441940666 1010246.3522941738 1056496.1528329866 910462.834684546 988464.7490413369 0.9354353492024793 1.1370819598020803 1.1782365078984725 1.2091463720721076 1.1743500673486755 0.9282310219802248 1.022035791639471 1.0688253211433487 0.921087813771365 1.0 19.914829991438268 2.747585121656992 24.84054754604023 1.0014253786713105 1.1348453142242707 0.4175030390597808 0.08094104384711928 647.3289107333259 1781816.3933899438 0.025751840955637456 0.026937126248582337 559.2231244829774 -2.747585121656992 0.13341993555296017 RNDS(ph)YTEEEPEWFSAGPTSQSETIELTGFDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNDSYTEEEPEWFSAGPTSQSETIELTGFDDK 32 1 B1AKL4;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 RNDS(0.346)Y(0.307)T(0.346)EEEPEWFS(0.001)AGPTSQSETIELTGFDDK 77.791 0.00074102 19152000.0 17920.0 14637.0 13365.0 11931.0 12246.0 19322.0 17135.0 17669.0 24418.0 16289.0 True False 17823.52071109918 15124.183696746646 15246.675829337497 13441.463376687003 13805.455512271315 17986.31561909559 16306.114587943366 18987.55050136403 18400.511084436657 15249.422074285481 1.1687997501986847 0.9917873361410843 0.999819911539296 0.8814408382959529 0.9053100796226847 1.179475230699085 1.0692939383873272 1.2451324652743405 1.2066366184109192 1.0 13.896466947709476 2.7267826776476176 24.816312230396 1.1565770546992236 0.9841401014632095 0.36980888478708906 0.09704221072825424 658.3335631497185 1387117.3924289288 0.0317105093395734 0.03011911837034441 533.0680797577546 -2.7267826776476176 -0.17243695323601405 RNEDEDSPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNEDEDSPNK 10 1 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 0 ; 150.22 3.5211e-05 894640000.0 1308410.0 1167300.0 1023920.0 934000.0 988220.0 1068660.0 1231390.0 1157770.0 1533750.0 1208110.0 False True 1301365.6659380163 1206152.8748522478 1168079.0359278168 1052244.3042348232 1114063.9593611609 994786.0495550511 1171822.961333387 1244168.6764369372 1155777.8636970564 1131007.3854849911 1.150625259073771 1.0664412012968716 1.0327775493940996 0.9303602414440527 0.9850191728707725 0.8795575186526953 1.0360878066511419 1.1000535384686467 1.0219012523967237 1.0 20.10917691948991 4.53893197309188 1.924966137916995 1.0009812186677913 1.1640540974129847 0.42149107720558343 0.056630702223643546 0.6087728396485141 3.2331576782145968 0.017100205317447586 0.15328389882947696 34588.51949058807 -4.53893197309188 0.16307287874519338 RNEFLGELQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNEFLGELQK 10 1 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;H0Y961;B1AMS2;Q14141-2;Q14141-4;Q14141 D6RGI3;B1AMS2 SEPT11;SEPT6 Septin-11;Septin-6 0 ; 164.48 9.8506e-06 665920000.0 1391640.0 1385910.0 1364690.0 1145970.0 916130.0 1343090.0 1477570.0 1110540.0 1953690.0 1380030.0 False True 1384147.5648657386 1432039.176549714 1556826.4899018786 1291049.6845010486 1032793.7251720657 1250245.349593784 1406094.2942344607 1193414.1340078576 1472229.2776047615 1291955.303896874 1.0713587077593079 1.108427801047227 1.205015750317433 0.9992990319455374 0.7994036032491918 0.9677156367737476 1.0883459280621504 0.9237271060447754 1.139535766573452 1.0 20.301124729168915 3.615529755059139 6.909064926667073 0.9781209129114253 1.1255073002090856 0.3284218727432495 0.09128642640243709 0.2760497355431939 14.38308866069816 0.02449515857268167 0.03807274024801917 4126.005048759843 -3.615529755059139 0.1473863872976603 RNEIDAEPPAKR ddPTM_BT-474_Trastuzumab_2h_R1 4 RNEIDAEPPAKR 12 2 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 ;;; 127.71 0.00014895 898018000.0 670952.0 730785.0 715011.0 641119.0 618363.0 740884.0 731619.0 703244.0 939448.0 715401.0 False True 667339.6689817742 755108.736956139 815678.3338129778 722284.5996645878 697107.8627253495 689668.4329333411 696227.7939140089 755723.6382806757 707933.6283582535 669743.49569439 0.9964108248485138 1.1274596047748733 1.2178966112500764 1.0784495919825592 1.0408579810134446 1.0297501018928044 1.0395439424046364 1.1283777194389049 1.0570220284472758 1.0 19.353249139642184 3.490774065302513 24.719855962640246 1.0589988765994938 1.1207589097864434 0.1812701194973193 0.058995216050211935 967.54210859863 1751836.0649341587 0.01639441730881173 0.0242340773449022 3095.808335873792 -3.490774065302513 0.06176003318694967 RNEIWLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNEIWLLK 8 1 Q9NRV9;A0A3B3IRV5 Q9NRV9 HEBP1 Heme-binding protein 1 0 ; 123.35 0.0021665 1516990000.0 1599630.0 2334430.0 2227800.0 2358000.0 1983520.0 2125070.0 1964280.0 1764240.0 1631460.0 2145000.0 False True 1591017.7698156014 2412130.0913572647 2541454.87561527 2656522.5582288154 2236109.514755873 1978168.912776705 1869260.2721217042 1895896.5474291989 1229408.5434439771 2008104.263573109 0.7922983874276692 1.2011976345616908 1.2655990636129353 1.3229007110925342 1.1135425362710323 0.9850927308210887 0.9308581760568779 0.9441225646599376 0.6122234615728747 1.0 20.93740274729552 2.4225537213212993 1.5592987861701881 0.8573072206321904 1.1612506198673416 0.3758872503706714 0.16324689922397345 0.4083553234893032 2.01174827236109 0.08085945153104131 0.05874293747740486 264.5779951943014 -2.4225537213212993 0.3039433992351511 RNELVIR ddPTM_BT-474_Trastuzumab_2h_R1 3 RNELVIR 7 1 P11413;P11413-3;P11413-2 P11413 G6PD Glucose-6-phosphate 1-dehydrogenase 0 ;; 128.61 0.005998699999999999 1679670000.0 1012490.0 1502230.0 1445960.0 1486180.0 1402310.0 1379740.0 1249500.0 1097460.0 1251800.0 1365150.0 False True 1007038.8663382138 1552230.8174327884 1649538.599490376 1674330.2356185312 1580885.866357439 1284361.8213586037 1189056.9114464682 1179358.0379889624 943310.6632606206 1278024.9582362836 0.7879649453231027 1.2145543852092826 1.290693572813158 1.3100919702923188 1.2369757383604725 1.0049583250166454 0.9303862994095247 0.922797344753357 0.7381003455225321 1.0 20.28548457992217 2.500261905202355 2.837058688666859 0.8956294872049342 1.1846147798922944 0.41541054064806604 0.1506399971379742 0.25935680259051946 4.223206181759558 0.056378274338406885 0.04892014300066828 316.4185275362848 -2.500261905202355 0.2889852926873602 RNES(ph)PGAPPAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNESPGAPPAGK 12 1 P49796-1;P49796-4;P49796-6;P49796;C9J582;P49796-2;H7BXY1;A0A087WUY2;P49796-7;P49796-8;P49796-9 P49796-1 RGS3 Regulator of G-protein signaling 3 1 RNES(1)PGAPPAGK 82.36200000000002 0.009284 190250000.0 358250.0 328430.0 308040.0 288030.0 304030.0 382610.0 288850.0 387420.0 540770.0 398570.0 True False 356321.221805317 339361.5940098723 351409.35446832166 324494.5684676189 342746.41837300744 356161.0712670616 274877.2219858442 416331.24767889775 407504.4794467533 373132.9213670556 0.9549444752820383 0.9094925014028391 0.9417806211814684 0.8696487227092178 0.9185638649017609 0.9545152702210947 0.736673732724441 1.1157719510612343 1.0921161229991978 1.0 18.509330128608322 1.6441378256487855 10.85181439863479 1.0775459489554917 0.9024737113067967 0.582502302794953 0.06617155754610429 0.07021544631003128 15.170282277688939 0.02992588881225808 0.016087349040957197 44.06946981079738 -1.6441378256487855 -0.17507223764869506 RNGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RNGAAGPHSPDPLLDEQAFGDLTDLPVVPK 30 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;RNGAAGPHS(0.999)PDPLLDEQAFGDLT(0.001)DLPVVPK;RNGAAGPHS(0.999)PDPLLDEQAFGDLT(0.001)DLPVVPK;RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK 125.02 6.8791999999999984e-06 1158210000.0 601265.0 605734.0 612457.0 591174.0 553126.0 703046.0 653854.0 545000.0 861416.0 810148.0 True False 598027.856046822 625895.4900160645 698685.6220283236 666016.567785564 623563.3174653422 654446.0848122698 622224.584055157 585670.6674539247 649131.5691830245 758443.6610374021 0.7884934462090926 0.8252366288617433 0.9212096532953532 0.8781358484486297 0.8221616838519422 0.8628802881905769 0.8203965779133494 0.7722006228555488 0.8558731551597911 1.0 19.532682492139568 3.225349931629585 24.733753312228135 0.837477900310965 0.856119507646211 0.0 0.06514066727657368 1178.620664204615 2206671.4073002855 0.018612803775801434 0.022370084228750305 1680.1572551281495 -3.225349931629585 0.018641607335246002 RNLDIERPTYTNLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 RNLDIERPTYTNLNR 15 2 P68363;F8VQQ4;F8VVB9;C9JDS9;P68366-2;P68366;Q9BQE3;F5H5D3 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA1A;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ;;; 232.26 4.7593e-14 8733100000.0 3236570.0 4035930.0 3971360.0 4167050.0 3995510.0 4750170.0 4672710.0 4181340.0 5521050.0 5030820.0 False True 3219144.6667367355 4170263.4902787902 4530492.968320075 4694598.102742737 4504314.515256831 4421801.928597419 4446673.165814353 4493372.823214298 4160461.2057797154 4709748.7604983095 0.6835066646731571 0.8854534928180671 0.9619394151803401 0.9967831282461085 0.9563810607129408 0.9388615302973348 0.9441423294400694 0.9540578599226346 0.8833722173620834 1.0 22.167218671274615 4.717012399959873 2.4700942532126446 0.9531369838909517 0.6305929217974079 0.8749699592143576 0.0308133639564985 0.1540275714827175 1.2136286724145002 0.007567687955687876 0.1028397180227868 52120.95924495057 -4.717012399959873 -0.3225440620935438 RNNGVVDK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNNGVVDK 8 1 P31939-2;P31939;H7C1S2 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ; 135.71 0.0013181 218770000.0 309270.0 320510.0 281240.0 284770.0 293150.0 286680.0 339530.0 320450.0 459830.0 373730.0 False True 307604.9246831274 331177.9815976134 320836.14741809777 320821.85280187445 330480.9148638195 266862.4863721315 323105.63676944375 344363.6062121291 346511.05790631974 349878.2314336491 0.8791770880477358 0.9465521196920136 0.9169937383742067 0.9169528823993588 0.9445598073068227 0.7627296081800943 0.9234802503873909 0.9842384443326941 0.990376155974231 1.0 18.416493380856 1.7756745019573625 3.99039070122225 0.9913462281857238 0.8974036108754146 0.4337795427333282 0.0492255307546945 0.21072826675213882 6.589892292770792 0.02620393049214627 0.013554117651608423 59.658798407799196 -1.7756745019573625 -0.09394261731030917 RNPDELAEALDER ddPTM_BT-474_Trastuzumab_2h_R1 1 RNPDELAEALDER 13 1 O14908;O14908-2;K7EM11 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 150.05 7.064e-05 189750000.0 84524.0 108920.0 103190.0 122140.0 113420.0 109670.0 117250.0 99891.0 121750.0 107890.0 False True 84068.93217549917 112545.33635646972 117718.25505644121 137602.9114767035 127863.36470699114 102088.77103541113 111578.16956150348 107345.37365622027 91746.34386641679 101004.36783072392 0.8323296703009189 1.114262073746035 1.1654768757498544 1.3623461483103 1.2659191622413892 1.010736201096814 1.104686578985381 1.062779520942336 0.9083403602919142 1.0 16.624058156636387 1.6477170796771123 1.362934231303102 0.9591370557789853 1.144170417823483 0.18149321239584582 0.1358891656873599 0.6957764592858293 2.4857195359977644 0.12067804261182609 0.04416510242033872 44.43417075935765 -1.6477170796771123 0.18503336204449772 RNPDTQWITK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNPDTQWITK 10 1 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 159.09 1.2492e-05 534480000.0 834460.0 821340.0 794530.0 670050.0 578740.0 845330.0 795400.0 707340.0 973180.0 859890.0 False True 829967.3600772213 848677.8053894863 906392.917821438 754878.2612982253 652439.1085392699 786894.326792779 756923.4632769279 760125.3025997418 733352.8289438961 805011.0840111331 1.03100115832162 1.0542436275048224 1.125938432183007 0.937724059073683 0.8104722052873583 0.9774950214000986 0.9402646476684536 0.9442420330565654 0.9109847597250649 1.0 19.618649121934634 3.6834736180971617 8.564985711175703 0.9275805278288741 1.0686527411628912 0.5976285521423119 0.05211828393279771 0.2377367387394984 35.09691623753746 0.013704254295282705 0.021306172597491433 4824.736705459001 -3.6834736180971617 0.1410722133340171 RNPDTQWITKPVHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNPDTQWITKPVHK 14 2 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ; 153.24 3.8716e-06 7523500000.0 4181900.0 4356700.0 4214400.0 4125600.0 4480900.0 5262200.0 5095600.0 4740600.0 6897500.0 5885700.0 False True 4159385.1150527666 4501710.125819241 4807750.887778524 4647900.536992705 5051516.054624903 4898436.4998863945 4849106.360917675 5094367.644279041 5197703.546764764 5510069.586998716 0.7548697978092769 0.8169969643289533 0.872539050890147 0.8435284643155249 0.9167789943241746 0.8889972118400282 0.8800444866176252 0.9245559541206986 0.9433099645472727 1.0 22.393639108117707 7.999999999999997 0.14677535065864972 1.011874765975151 0.1593071001465155 0.8749805585221209 0.023095785610419358 23.765307091713368 0.22976337998086835 0.0869866350019178 4.298206030253439 99999999.99999939 -7.999999999999997 -0.8525676658286355 RNPPGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNPPGGK 7 1 Q9UK76;Q9UK76-3 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 0 74.415 0.074148 55643000.0 123530.0 135140.0 116450.0 109980.0 108510.0 86281.0 141260.0 121710.0 160430.0 151540.0 False True 122864.92820547329 139638.05320614486 132845.14779845512 123903.45672349654 122328.10531084111 80316.5975536274 134426.7141343963 130792.61823085706 120894.17615186241 141868.5874600787 0.8660474485942635 0.9842774620240614 0.9363957883617982 0.8733678042601397 0.8622635038589059 0.5661337649973304 0.9475438963697547 0.9219279656792355 0.85215605735048 1.0 17.11419565768707 0.25719740477778885 0.9496456734749469 1.0003773824325528 0.8681852269224011 0.11321844272274195 0.10925428253256983 8.280281842631426 8.507162518236058 0.12499885005749153 0.03545677631111335 1.807995748001418 -0.25719740477778885 -0.13219215551015173 RNPS(ph)PDHSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNPSPDHSYK 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 RNPS(0.996)PDHS(0.004)YK 113.25 0.0010877 0.0 190480.0 206710.0 181430.0 165590.0 160970.0 194990.0 198510.0 183940.0 280480.0 201580.0 True False 189454.47684431743 213590.21739116622 206973.76698217014 186553.67702167467 181468.5753560603 181510.80025708774 188907.3129181581 197666.53682839454 211359.46223944635 188714.99181867932 1.003918528244691 1.1318137225493323 1.0967531778346162 0.9885472013846082 0.9616012676428933 0.9618250172274946 1.0010191087503189 1.0474342018270388 1.119992959767204 1.0 17.52584951191324 3.7427383721424157 24.904711803460472 1.0109538350112297 1.0829270042758854 0.2470203813616899 0.05254885555053237 469.87503429256515 2801038.708789202 0.014414109548560624 0.024851235180604947 5530.168602070345 -3.7427383721424157 0.07197316926465569 RNPS(ph)PDHSYKR ddPTM_BT-474_Trastuzumab_2h_R1 7 RNPSPDHSYKR 11 2 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 RNPS(0.999)PDHS(0.001)YKR;RNPS(0.995)PDHS(0.005)YKR;RNPS(1)PDHSYKR;RNPS(1)PDHSYKR;RNPS(1)PDHSYKR;RNPS(1)PDHSYKR;RNPS(0.999)PDHS(0.001)YKR 92.939 0.0050203 3577618000.0 835915.0 917529.0 841108.0 942805.0 890225.0 940674.0 1033752.0 906965.0 1292606.0 1053793.0 True False 831414.526518888 948068.3981070059 959528.6953582051 1062164.0163320266 1003589.876973031 875647.4204884126 983745.4664438658 974647.3337749515 974060.5713330064 986539.0285424233 0.8427588797447514 0.9610044516006058 0.9726211205002959 1.0766568636431308 1.017283501146224 0.8875953156989145 0.9971683207478523 0.9879460473195457 0.9873512787143826 1.0 19.91201660107832 4.772048866845799 2.23451057483545 0.9907236996304527 0.7970700067686934 0.507002059221048 0.04376351847052349 0.6025907807277859 3.2353010077403073 0.011440870260058142 0.2380142284381126 59162.82004773149 -4.772048866845799 -0.19365369286175926 RNPSNQS(ph)SLESDSNYPSISTSEIGDTEDALQQVEEIGLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNPSNQSSLESDSNYPSISTSEIGDTEDALQQVEEIGLEK 40 1 Q9ULV0;A0A0A0MR36;Q9ULV0-2 Q9ULV0 MYO5B Unconventional myosin-Vb 1 RNPS(0.235)NQS(0.291)S(0.291)LES(0.094)DS(0.07)NY(0.014)PS(0.004)IS(0.001)T(0.001)S(0.001)EIGDTEDALQQVEEIGLEK 64.221 0.0021605 28876000.0 11667.0 11370.0 11066.0 11192.0 9760.0 12738.0 10421.0 9683.5 14164.0 13748.0 True False 11604.186168325556 11748.443576689857 12623.996612603727 12608.906052458393 11002.878147947742 11857.452042026689 9916.896417914088 10406.13194181666 10673.471987876193 12870.590869745036 0.9016047736863096 0.9128130709450942 0.9808404866849603 0.9796680028185973 0.854885238704329 0.9212826483281403 0.7705082477002503 0.8085201407713463 0.8292915294950738 1.0 13.65179066661882 2.804405948487246 1.755350304740696 0.8360988625265741 0.9406375226979393 0.18234865601968508 0.06736979769754717 0.4211765536220061 2.583468864376416 0.02450111615439686 0.025138604446897736 637.3910316585424 -2.804405948487246 0.10453866017136526 RNPSPDHS(ph)YK ddPTM_BT-474_Trastuzumab_2h_R1 2 RNPSPDHSYK 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 RNPS(0.006)PDHS(0.994)YK;RNPS(0.003)PDHS(0.997)YK 153.39 1.0007e-05 1310940000.0 1911470.0 1881100.0 1709250.0 1574200.0 1678650.0 2024280.0 1902460.0 1844540.0 2441500.0 1911310.0 True False 1901178.857904284 1943711.2763510365 1949897.542932668 1773493.5585936394 1892416.1273619363 1884346.2882425631 1810430.7416970406 1982188.941184334 1839825.0394238704 1789328.5594451851 1.062509648028968 1.0862796919497673 1.0897370036597809 0.9911503112338096 1.0576124308599397 1.0531024491258554 1.0117933523949334 1.1077836603686406 1.0282209098558974 1.0 20.770986891068492 RNQKPEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 RNQKPEVR 8 2 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 ;; 131.62 0.00056099 1562570000.0 1870220.0 1954100.0 2030310.0 1762600.0 1752030.0 2067080.0 2133830.0 1841200.0 2713140.0 2127120.0 False True 1860150.9433209777 2019141.0372216043 2316160.0002291193 1985744.9792765481 1975140.6354045996 1924187.6249829293 2030608.490877805 1978599.6934241562 2044523.0012133871 1991365.3804809477 0.9341083065688932 1.0139480464072084 1.1631014694398918 0.9971776142844051 0.9918524519732137 0.9662654798780353 1.019706634845374 0.9935894802722198 1.0266940568785026 1.0 20.925326523805577 RNQSFCPTVNLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNQSFCPTVNLDK 13 1 P46776;E9PLL6;E9PJD9 P46776 RPL27A 60S ribosomal protein L27a 0 160.31 1.755e-06 0.0 430530.0 400560.0 347250.0 395350.0 375590.0 455000.0 447510.0 404450.0 575950.0 443870.0 False True 428212.0743163795 413892.3974563665 396139.78164889215 445401.26946385094 423419.16020365735 423546.9209547925 425862.23164578597 434632.11275548564 434014.83983460144 415541.8365837741 1.0304908835095141 0.9960306304150556 0.9533090215551125 1.0718566224897 1.018956752188044 1.0192642079960692 1.0248359952077444 1.0459406839240433 1.0444552187637626 1.0 18.664634208697066 3.737070831115409 24.99986104089011 1.0333175029915187 0.9935522255371009 0.33319230085347395 0.02518829018110933 149.89206858547732 2515335.5260331784 0.0064616563717684854 0.010690028865952429 5458.468785487163 -3.737070831115409 -0.039765277454417824 RNRPLLDFVSMEELNDMDDYDS(ph)EDDNDWRPTVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNRPLLDFVSMEELNDMDDYDSEDDNDWRPTVVK 34 3 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 RNRPLLDFVSMEELNDMDDY(0.032)DS(0.968)EDDNDWRPTVVK 91.761 0.00028166 36321000.0 11108.0 13398.0 13216.0 12867.0 16121.0 14705.0 16450.0 16696.0 25519.0 18987.0 True False 11048.195762214822 13843.944330737962 15076.697924468725 14495.960880716766 18173.913793346896 13688.477961846635 15654.250654897496 17941.94030057013 19230.184387080815 17775.23340441147 0.6215499684787753 0.7788333360113383 0.8481856514315576 0.815514516794989 1.022428981935983 0.7700871009912826 0.8806776428045335 1.0093786051842948 1.0818527076166693 1.0 14.117580883370294 6.046604724682626 0.2708006252382947 1.0274726683307076 1.0020062465402633e-17 0.6510201610148706 0.08064721401319039 11.801240693103356 0.41085261593712585 0.0999259493307504 4.578416373730352 1113280.8141818913 -6.046604724682626 -1.0274726683307076 RNS(ph)CNVGGGGGGFK ddPTM_BT-474_Trastuzumab_2h_R1 4 RNSCNVGGGGGGFK 14 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 RNS(1)CNVGGGGGGFK;RNS(1)CNVGGGGGGFK;RNS(1)CNVGGGGGGFK;RNS(1)CNVGGGGGGFK 198.35 1.3574e-08 8194100000.0 8875970.0 5120490.0 4819450.0 4729370.0 4722010.0 5370200.0 4972210.0 5941530.0 7600720.0 6672590.0 True False 8828182.763732977 5290922.414248433 5497986.668589643 5328107.757086773 5323329.983953968 4998970.71409104 4731685.206613242 6384917.139078014 5727624.4004299855 6246739.593508298 1.413246483478734 0.8469894310540552 0.8801370036784038 0.8529421912550701 0.8521773485621282 0.8002527781510282 0.7574647759497575 1.0221199464938977 0.9168982178130518 1.0 22.57467195916282 4.740603459497032 24.958236693708074 0.8783515059514635 1.4132466706208135 0.8095021886457194 0.07744938915701732 75.53174392819179 922736.1265830365 0.019158070233186216 0.125941551598773 55030.500091803166 -4.740603459497032 0.53489516466935 RNS(ph)CNVGGGGGGFKHPAFK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSCNVGGGGGGFKHPAFK 19 2 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 RNS(1)CNVGGGGGGFKHPAFK 211.92 5.5483000000000006e-17 950300000.0 1222300.0 898170.0 804350.0 875110.0 844150.0 884470.0 842180.0 896970.0 1654600.0 1238000.0 True False 1215719.2726102963 928065.0454947702 917595.4884644671 985898.8362729491 951647.4988309509 823328.6707184293 801440.5359599737 963906.4561213709 1246846.0005040902 1158989.7800948762 1.048947362168091 0.8007534332345861 0.7917200860816492 0.8506536064470235 0.8211008545330296 0.7103847547741368 0.6914992260711452 0.8316781326945475 1.0758041372910312 1.0 20.144436414122875 1.2741914465165012 7.413456984619978 1.037882368372132 0.8087961995076421 0.4688680082095297 0.09309504181655491 0.14575552669332967 24.204851249356384 0.06561102722278606 0.023071311134047416 18.801454434287205 -1.2741914465165012 -0.22908616886448996 RNS(ph)FSENEK ddPTM_BT-474_Trastuzumab_2h_R1 6 RNSFSENEK 9 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 RNS(0.999)FS(0.001)ENEK;RNS(0.585)FS(0.415)ENEK;RNS(1)FSENEK;RNS(0.999)FS(0.001)ENEK;RNS(0.976)FS(0.024)ENEK;RNS(0.991)FS(0.009)ENEK 246.68 6.265e-11 7214450000.0 5831900.0 5270870.0 4643450.0 4797130.0 4662680.0 5893600.0 5680140.0 5740120.0 8089140.0 5967300.0 True False 5800501.698385 5446307.721641798 5297207.398409066 5404446.166139176 5256444.660130428 5486189.304042121 5405369.92795802 6168476.902138761 6095679.835922678 5586461.80513744 1.0383140350213662 0.9749118335747408 0.9482222528645289 0.9674184402673481 0.9409255524304274 0.9820508034256843 0.967583797491843 1.1041831336725667 1.0911521547174903 1.0 22.413503408327525 1.7564948699941223 13.193136879064054 1.0728394210122765 0.9719889621325846 0.5743120144425615 0.03564281623356088 0.1515153860586318 109.18659916198098 0.016080629086000008 0.008855445132979457 57.081433351612816 -1.7564948699941223 -0.1008504588796919 RNS(ph)FTPLSSSNTIR ddPTM_BT-474_Trastuzumab_2h_R1 5 RNSFTPLSSSNTIR 14 1 O60825 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase 1 RNS(0.999)FT(0.001)PLSSSNTIR;RNS(0.999)FT(0.001)PLSSSNTIR;RNS(0.999)FT(0.001)PLSSSNTIR;RNS(1)FTPLSSSNTIR;RNS(0.992)FT(0.008)PLSSSNTIR 128.92 4.3448e-05 8736470000.0 3426550.0 3412290.0 2943780.0 2895470.0 3041780.0 3101290.0 2906790.0 2371340.0 3371280.0 3044190.0 True False 3408101.8355254983 3525866.0098771383 3358238.6362055438 3262036.2051207707 3429132.652957431 2886905.121951404 2766177.4626838593 2548301.432220534 2540473.216837563 2849907.1879378194 1.1958641495239661 1.2371862581351079 1.178367720331114 1.1446113820573807 1.2032436240278888 1.0129821540049366 0.9706201922615779 0.8941699726244327 0.8914231409324732 1.0 21.442483505555185 2.5491709763813746 1.865520383632948 0.9216157376509071 1.1957940316566267 0.9051516755086403 0.0389084791467827 0.09043203286679388 0.6324282256096142 0.015718049868031457 0.013371000243888698 354.1367329073932 -2.5491709763813746 0.2741782940057196 RNS(ph)GSSLVSSSSASSNLSHLEEDSWILWGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSGSSLVSSSSASSNLSHLEEDSWILWGR 30 1 O60447-2;O60447 O60447-2 EVI5 Ecotropic viral integration site 5 protein homolog 1 RNS(0.276)GS(0.276)S(0.276)LVS(0.067)S(0.017)S(0.017)S(0.017)AS(0.017)S(0.017)NLS(0.017)HLEEDSWILWGR 42.347 0.068482 35356000.0 26374.0 45926.0 44322.0 44330.0 47111.0 42713.0 37273.0 34299.0 28377.0 40766.0 True False 26232.005314426868 47454.61914714672 50562.15234626984 49942.17345474272 53110.30660122607 39760.35084558691 35469.96259331271 36858.56554679295 21383.868582318755 38164.27897847146 0.6873444492223838 1.2434302551324488 1.3248554328719806 1.308610428168057 1.391623476790579 1.0418210931750025 0.9294021410262036 0.9657870273819382 0.5603110855148458 1.0 15.219935314911085 2.290390196442934 2.18043167322105 0.8551664164511492 1.207693663797976 0.3389116241417274 0.21386217455475395 0.3563312244716742 3.4664335933564323 0.09631261338758333 0.06810439750425389 195.1597245360634 -2.290390196442934 0.35252724734682683 RNS(ph)GSSLVSSSSASSNLSHLEEDTWILWGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSGSSLVSSSSASSNLSHLEEDTWILWGR 30 1 Q96CN4;Q96CN4-2 Q96CN4 EVI5L EVI5-like protein 1 RNS(0.524)GS(0.404)S(0.072)LVSSSSASSNLSHLEEDTWILWGR 87.439 0.00058064 79431000.0 22177.0 22784.0 22957.0 21891.0 23128.0 26061.0 31637.0 25366.0 39887.0 29154.0 True False 22057.601496096322 23542.351666781167 26189.1460541789 24662.398355465208 26073.21370960405 24259.464410995242 30106.597444923507 27258.93972593809 30057.383308416942 27293.366760004847 0.8081671158436595 0.8625667867871712 0.9595425249096037 0.9036041090982221 0.9552948868078531 0.888841036883166 1.1030737874757581 0.9987386299986557 1.1012706337300397 1.0 14.736262748084965 3.6019493423125533 0.42805909195622865 1.0568208882785304 0.7825030601488625 0.6138125964438392 0.05705932598754271 1.3882902037367404 0.39175087665499375 0.04901540044929568 0.17844519369044798 3998.98101471968 -3.6019493423125533 -0.2743178281296679 RNS(ph)LDGGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RNSLDGGGR 9 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 RNS(1)LDGGGR;RNS(1)LDGGGR;RNS(1)LDGGGR;RNS(1)LDGGGR 157.22 4.2299e-05 1028536000.0 410917.0 420967.0 391631.0 428133.0 404826.0 366509.0 437407.0 364792.0 466496.0 420444.0 True False 408704.6685291702 434978.63211507455 446769.240682325 482334.5939025348 456378.19150830864 341173.09549938445 416247.9523529935 392014.63141624245 351534.31152614334 393610.9039597815 1.0383469167585127 1.1050980238075923 1.13505300840948 1.225409634362718 1.1594653169337519 0.8667775513003698 1.0575112329599614 0.9959445418623307 0.8931010497668086 1.0 18.586410661757274 2.7581380265485795 24.972042243050936 0.973118404018535 1.136426642963827 0.6135203844798975 0.0671779142927967 582.8983510673846 743517.3639397159 0.0210807179754741 0.022330576251105055 572.9781047337857 -2.7581380265485795 0.163308238945292 RNS(ph)LEGYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RNSLEGYSR 9 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 RNS(0.857)LEGYS(0.143)R;RNS(0.732)LEGYS(0.268)R;RNS(0.975)LEGYS(0.025)R 112.73 0.0020292 2211080000.0 1546640.0 1750950.0 1651650.0 1722170.0 1698100.0 2006130.0 1943370.0 1678080.0 2109860.0 1932100.0 True False 1538313.062087858 1809229.3122783739 1884187.9636008425 1940196.5454219333 1914342.969572753 1867450.9550220603 1849361.76870566 1803306.8507175818 1589913.27367555 1808791.7238459697 0.8504644519364549 1.0002419230620283 1.0416832069501958 1.072647845433836 1.0583545603041313 1.0324300638944575 1.0224293622780558 0.9969676590974634 0.8789918997942858 1.0 20.786594865468263 1.4216155020649328 7.3835728332738695 0.938058848030895 1.0159247845006811 0.16028837236384863 0.06400001265223472 0.3576378164772783 35.59160180708701 0.04165163106097065 0.015986493493747488 26.40070364518965 -1.4216155020649328 0.07786593646978612 RNS(ph)LIELPDDYSCLLNQASHFR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNSLIELPDDYSCLLNQASHFR 22 1 Q8IWV7 Q8IWV7 UBR1 E3 ubiquitin-protein ligase UBR1 1 RNS(1)LIELPDDYSCLLNQASHFR;RNS(1)LIELPDDYSCLLNQASHFR 277.43 7.8335e-46 125170000.0 48900.0 49101.0 46866.0 51997.0 44722.0 54222.0 52954.0 49625.0 68647.0 58653.0 True False 48636.72783330075 50735.297102818724 53464.32543342545 58579.81486862746 50417.081611938425 50473.76076485876 50392.41271607551 53328.269490644045 51729.866672672724 54909.71532464034 0.8857581494594886 0.9239766916083724 0.9736769735069765 1.0668388011536492 0.9181814422795618 0.9192136667699864 0.9177321794174788 0.9711991616666308 0.9420895076004759 1.0 15.744773811305233 -3.750253987281021 0.0058589300625451046 1.86591376510056 0.11304083547623862 0.08748079955615706 0.04775787218156717 110136.46161984967 60.5271157471057 9723.529197718419 8426.40995228944 0.00017772397276916884 3.750253987281021 -1.7528729296243213 RNS(ph)LILKPKPDPAQQTDSQNSDTEQYFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSLILKPKPDPAQQTDSQNSDTEQYFR 28 3 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 RNS(0.973)LILKPKPDPAQQT(0.025)DS(0.002)QNSDTEQYFR 65.021 0.08200299999999999 152950000.0 129440.0 87646.0 87826.0 76298.0 73481.0 125490.0 112450.0 120390.0 150130.0 121120.0 True False 128743.10942213605 90563.24412687418 100191.13740272328 85957.31897698987 82838.36979399061 116815.17167168531 107010.36389928396 129374.1131280329 113132.47313893329 113390.01790395085 1.1354007328157434 0.7986879780157322 0.8835975093291905 0.7580677785041152 0.7305613961906278 1.0302068368190558 0.9437370756033313 1.140965629246321 0.9977286822087309 1.0 16.790934115119615 2.7004264364645016 19.733639745218035 1.0336638322183986 0.8532946493627428 0.3307585224492724 0.1138651152051389 50.10279264017336 25926.36925503056 0.03680405191957538 0.034703236133675576 501.6795941889187 -2.7004264364645016 -0.18036918285565584 RNS(ph)LPQIPMLNLEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNSLPQIPMLNLEAR 15 1 Q14289;Q14289-2;H0YB74 Q14289 PTK2B Protein-tyrosine kinase 2-beta 1 RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR 139.98 3.0745e-06 179649000.0 88656.0 113453.0 107021.0 90874.0 100038.0 119548.0 116015.0 104639.0 112406.0 104964.0 True False 88178.68594660753 117229.21452121311 122088.62655679211 102378.63908247883 112777.24632831926 111283.92814572199 110402.91122966165 112447.69352607556 84705.04746323153 98265.10765579846 0.8973550027083723 1.192989223925158 1.2424412842902723 1.041861567394697 1.1476835371040726 1.1324867066296376 1.123520991971833 1.1443298258009917 0.8620053392699176 1.0 16.584391609460475 1.247330895707911 24.999864436666055 0.9310026576846788 1.1227263595955248 0.38182961667039705 0.09343803195345127 153.67724466033252 438068.9186135717 0.0608486109274544 0.021478541306156358 17.67383905054543 -1.247330895707911 0.19172370191084598 RNS(ph)LQHHQDDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSLQHHQDDTK 12 1 Q6ZU80;H0YJH2 Q6ZU80 CEP128 Centrosomal protein of 128 kDa 1 RNS(1)LQHHQDDTK 56.599 0.056029 73076000.0 25465.0 24806.0 19853.0 26220.0 26226.0 17031.0 19340.0 16082.0 25948.0 16001.0 True False 25327.899269427468 25631.652714456348 22648.129834630563 29539.449311602835 29565.725646319413 15853.687056661678 18404.450314025376 17282.120502741323 19553.463085386295 14979.802480854678 1.690803286745499 1.7110808201386862 1.5119111125514897 1.971951856465163 1.9737059740344807 1.0583375232700092 1.228617689555497 1.1536948183949143 1.3053218231934034 1.0 13.870730980531018 2.7325808781527665 24.949332066856353 1.1647266011623718 1.765183501097318 0.8139391465306598 0.14874998417637778 209.38068158212118 873599.3426462286 0.04927460961592026 0.0475809325742896 540.2327123026138 -2.7325808781527665 0.6004568999349462 RNS(ph)LTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNSLTPR 7 1 Q9NQ86-4;Q9NQ86;D6RAU9 Q9NQ86-4 TRIM36 E3 ubiquitin-protein ligase TRIM36 1 RNS(1)LTPR;RNS(1)LTPR 86.898 0.01209 185906000.0 49632.0 78461.0 71063.0 85805.0 80532.0 61167.0 61575.0 47700.0 43625.0 61288.0 True False 49364.786826633564 81072.52695432393 81068.05270933121 96667.90420221508 90787.27284943926 56938.669261630246 58596.38201065737 51259.61621569213 32874.20329505077 57376.54736870333 0.8603652378978826 1.4129906847365623 1.4129127043561125 1.6847982082474287 1.582306308290697 0.9923683433884708 1.0212601611267291 0.8933896960773253 0.572955411272836 1.0 15.808173536155238 2.593311585966767 4.421313467195206 0.884897993062274 1.4079606732532675 0.5342721739513331 0.23216892727882107 0.18800425752945296 5.9733590598767154 0.08034856692498897 0.07489308442300231 392.0230344185212 -2.593311585966767 0.5230626801909934 RNS(ph)PAFLSTDLGDEDVGLGPPAPR ddPTM_BT-474_Trastuzumab_2h_R1 5 RNSPAFLSTDLGDEDVGLGPPAPR 24 1 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;A0A590UJF3 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 RNS(1)PAFLSTDLGDEDVGLGPPAPR;RNS(1)PAFLSTDLGDEDVGLGPPAPR;RNS(1)PAFLSTDLGDEDVGLGPPAPR;RNS(1)PAFLSTDLGDEDVGLGPPAPR;RNS(1)PAFLSTDLGDEDVGLGPPAPR 273.43 3.601399999999999e-52 1002058000.0 234444.0 241515.0 242014.0 221701.0 213142.0 297282.0 330326.0 270001.0 345142.0 350428.0 True False 233181.77955317727 249553.6807760993 276087.4675766021 249768.32386848464 240284.37030838916 276731.59506655484 314346.8694121377 290149.84565729764 260086.37876585478 328063.38502349483 0.7107827029721027 0.7606873920362283 0.8415674536700573 0.7613416652717798 0.7324327592705318 0.8435308775672611 0.9581894346107086 0.8844322740756884 0.7927930718243008 1.0 18.323615058866874 2.5148086408155725 4.996997707038694 0.9003116117655828 0.7668027770364697 0.5774090952448825 0.05930501366932337 0.15529142479538208 9.57463587885894 0.019807436490878978 0.017993341985823717 327.1964935295879 -2.5148086408155725 -0.13350883472911312 RNS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSK ddPTM_BT-474_Trastuzumab_2h_R1 10 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSK 30 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 RNS(0.999)PMAQT(0.999)PPCHLPNIPGVT(0.002)SPGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.991)PMAQT(0.991)PPCHLPNIPGVT(0.009)S(0.01)PGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.931)PMAQT(0.921)PPCHLPNIPGVT(0.072)S(0.072)PGT(0.004)LIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK 236.05 2.0744999999999998e-45 5212533000.0 1345384.0 998484.0 968284.0 899874.2 1017632.0 1424322.0 1354617.0 1275682.0 1693731.0 1340725.0 True False 1338140.6020302135 1031717.9363436758 1104609.9707245969 1013798.1814538188 1147221.4032225774 1325861.972633345 1289089.0005705347 1370879.8686219393 1276333.6898826268 1255158.7826475797 1.0661126070500782 0.8219820078599243 0.8800559626365189 0.8077051250164183 0.9140050000707292 1.0563300762925205 1.0270326100506455 1.092196371944482 1.0168703016126626 1.0 20.259438451785623 2.796963971106384 4.55955914745597 1.0474537850570567 0.8853851804660764 0.5000207780022927 0.06978929798237231 0.15955916728862177 6.931332873543023 0.021155919733222114 0.022189297629088712 626.561883197141 -2.796963971106384 -0.16206860459098027 RNS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_BT-474_Trastuzumab_2h_R1 3 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 44 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 145.76 1.6365e-12 1214050000.0 324803.0 307600.0 289925.0 302641.0 302850.0 435095.0 428612.0 368516.0 524415.0 406919.0 True False 323054.2967370056 317838.28005187353 330743.91992672475 340955.31956951943 341416.1523674154 405017.9067534621 407878.4001031562 396016.5352063309 395179.950050981 380949.08103911637 0.8480248747570386 0.8343327123533275 0.8682103104817924 0.8950154667376916 0.8962251633108895 1.0631812147930455 1.0706900748797834 1.0395524098026827 1.0373563547470623 1.0 18.53923864947397 2.8310143862323986 3.603120324015952 1.046929148947081 0.8629276267404159 0.9310895481803612 0.02371781586475659 0.05986151925280319 1.4600905483922233 0.008060407322683844 0.008530957732955386 677.663955212671 -2.8310143862323986 -0.184001522206665 RNS(ph)PMAQTPPCHLPNIPGVTSPGTLIEDSK ddPTM_BT-474_Trastuzumab_2h_R1 5 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSK 30 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 RNS(0.716)PMAQT(0.284)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.976)PMAQT(0.024)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.655)PMAQT(0.345)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.89)PMAQT(0.11)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.805)PMAQT(0.195)PPCHLPNIPGVTSPGTLIEDSK 249.96 8.688699999999999e-47 2835530000.0 1515350.0 1281760.0 1135178.0 1098786.0 1023172.0 1484940.0 1397722.0 1382237.0 1805340.0 1423400.0 True False 1507191.523971212 1324422.606759718 1295001.195255942 1237892.1949389325 1153466.8893844245 1382289.5929727664 1330108.8470434425 1485386.5437972688 1360438.1473166056 1332557.3933659496 1.131051864238394 0.9938953574182019 0.971816449860262 0.9289597589579994 0.8656039095403204 1.037320868770385 0.9981625209280313 1.114688606428638 1.0209227415565427 1.0 20.345766240651052 2.2484564467787105 2.521432396099121 1.0540084994090178 0.9763520878028511 0.09410677034860992 0.07104226478279775 0.49686573412921503 6.4754243104115625 0.03158346571519553 0.02240957007954376 177.19703341828102 -2.2484564467787105 -0.07765641160616665 RNS(ph)PMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 44 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 RNS(0.893)PMAQT(0.107)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 128.25 1.8016e-09 533700000.0 193470.0 209290.0 190400.0 223560.0 170030.0 215840.0 260620.0 182760.0 281870.0 237870.0 True False 192428.37901653786 216256.0911315231 217206.66501353233 251862.67307787677 191682.3126532331 200919.48883270822 248012.81493491685 196398.4792364759 212406.91536449207 222688.93294924745 0.8641128971613232 0.971112880498689 0.9753814980245804 1.131006690553761 0.8607626347417947 0.9022428109550434 1.1137186372501093 0.881940905798119 0.9538278914511719 1.0 17.76467033621777 3.525586733600999 0.003200037289911901 1.924176525577232 7.960448430204766e-05 0.015075411149486295 0.09044204378526792 413256.2073221379 324.89038094296325 96254.81434719062 99097.8310888679 3354.182846496356 -3.525586733600999 -1.92409692109293 RNS(ph)SEASSGDFLDLK ddPTM_BT-474_Trastuzumab_2h_R1 14 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 RNS(0.981)S(0.019)EASSGDFLDLK;RNS(0.998)S(0.002)EASSGDFLDLK;RNS(0.989)S(0.011)EASSGDFLDLK;RNS(0.994)S(0.006)EASSGDFLDLK;RNS(0.496)S(0.496)EAS(0.006)S(0.002)GDFLDLK;RNS(0.435)S(0.435)EAS(0.114)S(0.017)GDFLDLK;RNS(0.984)S(0.015)EAS(0.001)SGDFLDLK;RNS(0.906)S(0.094)EASSGDFLDLK;RNS(1)SEASSGDFLDLK;RNS(0.894)S(0.106)EASSGDFLDLK;RNS(0.994)S(0.004)EAS(0.001)S(0.001)GDFLDLK;RNS(0.482)S(0.002)EAS(0.482)S(0.034)GDFLDLK;RNS(0.872)S(0.128)EASSGDFLDLK;RNS(0.855)S(0.143)EAS(0.002)SGDFLDLK 252.32 7.4403e-25 58685477000.0 32006999.0 25068703.0 23327119.0 20725493.0 22300714.0 30212651.0 29376291.0 27820879.0 36666906.0 30087796.0 True False 31834676.873695888 25903099.625003994 26611374.592246894 23349338.288767345 25140577.7412123 28124121.549300455 27955247.57600055 29897014.262541045 27630838.32766801 28167567.099821895 1.130189084519734 0.9196072750339798 0.9447523280210863 0.8289440904150712 0.8925363575816694 0.9984576037267444 0.9924622697065417 1.0613985281934444 0.9809451497798233 1.0 24.74753162428227 2.5677288750413934 5.468517211269968 1.015711602773036 0.9357753544395129 0.14795246901556713 0.07452261515504624 0.3779866552672117 17.76544792245787 0.0250976515778462 0.023442251174878272 369.5973724317057 -2.5677288750413934 -0.07993624833352309 RNS(ph)SS(ph)PVS(ph)PASVPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 3 RNS(0.997)S(0.005)S(0.997)PVS(0.985)PAS(0.017)VPGQR 171.3 8.371e-12 0.0 240480.0 272160.0 210290.0 250440.0 253930.0 310910.0 269190.0 245500.0 288650.0 275930.0 True False 239185.28239983984 281218.6810758055 239897.00412655307 282145.678321808 286266.4803389727 289417.5235034165 256168.25129433756 263820.45662374026 217516.07521183725 258319.91116444167 0.9259266206838346 1.088645005366183 0.9286818156802442 1.0922335682525042 1.1081858887631033 1.1203841089863904 0.9916705612803715 1.0212935403798473 0.8420414602626994 1.0 17.978799324362285 1.3890894612190925 6.28572362006372 0.9208009651865096 1.0390356625963024 0.26789537279021614 0.07517426398296588 0.25992554807944646 14.071044881579862 0.04976282723987653 0.01815839086056391 24.495677814140198 -1.3890894612190925 0.11823469740979287 RNS(ph)SS(ph)PVSPASVPGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 RNS(0.9)S(0.1)S(0.783)PVS(0.217)PASVPGQR;RNS(0.999)S(0.237)S(0.763)PVSPASVPGQR 198.98 2.6268e-11 1370000000.0 908200.0 1008430.0 865040.0 931700.0 958430.0 1124520.0 997190.0 915920.0 1264190.0 1050010.0 True False 903310.3521105067 1041994.9829411925 986830.1129375318 1049653.1244706477 1080480.379440324 1046784.5792353478 948952.11006427 984270.6013475196 952647.3137781137 982997.4628412124 0.9189345713056252 1.0600179780011398 1.0038989420025985 1.0678085795224503 1.0991690419193465 1.0648904181398067 0.9653657775692124 1.0012951595038988 0.9691248958309862 1.0 19.90682816734944 2.235207902014241 24.999875797856614 0.9852341610441395 1.039775143173497 0.22100736491749096 0.047301010400702635 130.95967534206156 976501.1508079555 0.017439422909544578 0.013412172940820137 171.87309675266536 -2.235207902014241 0.05454098212935743 RNS(ph)SSPVS(ph)PASVPGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 RNS(1)S(0.001)S(0.074)PVS(0.924)PAS(0.001)VPGQR;RNS(0.999)S(0.002)S(0.326)PVS(0.661)PAS(0.012)VPGQR 281.71 1.0455e-35 1040650000.0 1018990.0 1065040.0 899320.0 1021700.0 981480.0 1159980.0 1081250.0 992350.0 1247700.0 1106920.0 True False 1013503.8710604323 1100489.2125697245 1025936.4389704302 1151047.1152427397 1106465.6603122687 1079793.3128992096 1028945.8067238863 1066404.1960511964 940221.0533234343 1036275.4179181107 0.9780255842569086 1.0619659537814956 0.9900229429658269 1.1107540479491511 1.0677331925282671 1.0419945260001697 0.9929269660676215 1.0290741028998012 0.9073080737670582 1.0 19.98297605811847 1.34801387109384 6.840066469980359 0.9542681845716975 1.0357780833859165 0.3525046282447334 0.043552036596086134 0.21642726742737925 11.773228321158948 0.02901345544439003 0.01049295261353197 22.285063252303992 -1.34801387109384 0.081509898814219 RNS(ph)SSSSSPSERPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 RNS(0.968)S(0.021)S(0.003)S(0.003)S(0.003)S(0.003)PSERPR;RNS(0.979)S(0.003)S(0.013)S(0.005)SSPSERPR;RNS(0.922)S(0.069)S(0.006)S(0.001)S(0.001)S(0.001)PSERPR 196.19 1.9837e-08 692020000.0 286994.0 264359.0 260594.0 281047.0 255674.0 321864.0 286073.0 234041.0 336337.0 315783.0 True False 285448.8561920309 273158.02950661007 297283.370076347 316627.52138360165 288232.56840147433 299614.2992663588 272234.55608501437 251506.32785611728 253451.2530348996 295629.45858457196 0.9655629637138186 0.923987855657039 1.005594542234369 1.0710283166622336 0.9749791843528964 1.0134791732219977 0.9208641026115302 0.8507485318286296 0.8573274606948338 1.0 18.17343051129678 2.0861666744106473 4.639095509148049 0.8859124262180346 0.9923423673279125 0.37663934677152766 0.05260945279163416 0.18672411465487665 7.22120166400893 0.020766806594298005 0.014859454668453884 121.9457514990524 -2.0861666744106473 0.10642994110987791 RNS(ph)TDSRPVSVTYR ddPTM_BT-474_Trastuzumab_2h_R1 4 RNSTDSRPVSVTYR 14 2 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 RNS(0.499)T(0.499)DS(0.001)RPVSVTYR;RNS(0.978)T(0.018)DS(0.003)RPVSVTYR;RNS(0.87)T(0.12)DS(0.01)RPVSVTYR;RNS(0.967)T(0.033)DSRPVSVTYR 142.72 7.3421e-06 1688340000.0 386091.0 451202.0 434547.0 404733.0 384412.0 447025.0 464863.0 366218.0 531160.0 457595.0 True False 384012.3289547429 466219.9858126317 495727.4404497665 455972.15630179085 433364.58961156633 416123.21393366123 442375.800740888 393547.04677732347 400262.73517935025 428390.89533321076 0.8964063735669513 1.0883050757883095 1.1571848184686093 1.0643833967272502 1.0116101773696355 0.9713633470431077 1.0326451975521083 0.9186634241402701 0.9343399673982756 1.0 18.70856829300022 2.9533902106549124 2.3400525753891124 0.9662883727095573 1.061332447927716 0.22903164320587754 0.06788176183381295 0.40532992863614387 4.4194131225955235 0.0230702043485387 0.026172401511554262 898.2354905546165 -2.9533902106549124 0.09504407521815872 RNS(ph)TTFPSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RNSTTFPSR 9 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 RNS(0.667)T(0.115)T(0.115)FPS(0.103)R;RNS(0.97)T(0.029)T(0.001)FPSR;RNS(0.791)T(0.088)T(0.031)FPS(0.089)R 148.13 5.5585e-05 2224650000.0 966260.0 940760.0 792020.0 888930.0 901200.0 996700.0 831580.0 795010.0 1132180.0 946600.0 True False 961057.7635215772 972072.627898571 903529.5316387501 1001468.4468559531 1015962.4781691099 927800.4749794324 791353.2984559056 854337.6831789821 853169.4094347412 886187.1775749672 1.0844861986736165 1.0969156996365346 1.0195696287450693 1.1300868170948386 1.146442313630931 1.046957683949275 0.8929866268449376 0.9640600821113882 0.9627417672296068 1.0 19.75725192675961 2.420794380444484 5.915182110248377 0.951965985486427 1.0937168857291457 0.7355198098031344 0.03975846159442271 0.09824395459067996 7.167842159473667 0.014019755288123782 0.011734123668873515 263.50834929678405 -2.420794380444484 0.14175090024271875 RNS(ph)TTIMSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSTTIMSR 9 1 G1UD79;Q7Z309-4;Q7Z309;Q7Z309-2;Q7Z309-3 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 RNS(0.971)T(0.022)T(0.006)IMS(0.001)R 41.218 0.093132 65061000.0 61600.0 77465.0 66045.0 74026.0 69738.0 76854.0 67541.0 68303.0 85638.0 81604.0 True False 61268.35244440337 80043.37569641868 75343.56192656912 83397.68400994323 78618.72093048976 71541.26387485623 64273.78379832406 73400.1166956062 64533.662390408215 76395.9628553006 0.8019841645356311 1.0477435286472734 0.9862243908002729 1.0916504078612685 1.029095229539802 0.9364534616882895 0.8413243500846136 0.9607852817383982 0.8447260820920547 1.0 16.2212087806046 2.56362891780872 5.530194086903823 0.9090566095294398 0.9991206418485812 0.165992548985454 0.0840123873666555 0.35694204814646996 17.594298401027498 0.02676062275284695 0.024986600761748943 366.1246064037248 -2.56362891780872 0.0900640323191414 RNS(ph)VERPAEPVAGAATPSLVEQQK ddPTM_BT-474_Trastuzumab_2h_R1 8 RNSVERPAEPVAGAATPSLVEQQK 24 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK 310.71 1.4737e-73 10404210000.0 3232770.0 3131540.0 2934161.0 2933510.0 2957670.0 3546660.0 3439780.0 3027440.0 3788560.0 3207220.0 True False 3215365.125514511 3235771.415844098 3347265.3646153943 3304892.0652204435 3334311.743016452 3301487.742139613 3273384.70016433 3253362.945828824 2854920.1521030916 3002532.4737608125 1.0708843796407357 1.0776807392164998 1.1148140424349142 1.100701522498743 1.11049981046169 1.099567705259269 1.0902079257328605 1.0835396367100185 0.950837393784178 1.0 21.51774841874562 1.2881484314025233 6.446584472420073 0.9756502983473158 1.0945429461671923 0.8849410045201717 0.0170334153906632 0.0512489340777532 4.7307790470140665 0.01201727189561254 0.004213968693517984 19.415493390490198 -1.2881484314025233 0.11889264781987652 RNSCNQCNEPRPEDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RNSCNQCNEPRPEDSR 16 2 Q92804-2;Q92804;A0A075B7D9;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ; 72.898 0.02057 76441000.0 56468.0 61755.0 55470.0 53307.0 68018.0 57738.0 53353.0 55252.0 59957.0 56631.0 False True 56163.98256218462 63810.47784331419 63279.69384611677 60055.66073431012 76679.6891257284 53746.70796063252 50772.11156174744 59375.18480397108 45181.40073263856 53016.76109576162 1.0593627638010237 1.2035906480227339 1.1935790217704492 1.1327674398259537 1.4463291898806412 1.0137682281939562 0.9576615114235331 1.1199323303949962 0.8522097502529355 1.0 15.694160915205135 2.526244295997231 24.999482628226072 1.0024686171991801 1.2048461597077138 0.4901123441964116 0.11099214419546126 340.3374906759003 173202.54447571104 0.034874379268433814 0.03287927008719361 335.9265239147858 -2.526244295997231 0.20237754250853368 RNSLEGYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSLEGYSR 9 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 RNS(0.004)LEGYS(0.996)R 123.38 0.00059239 1330900000.0 1043400.0 1120400.0 959680.0 1155100.0 1076500.0 1171900.0 1133300.0 976430.0 1246900.0 1194000.0 True False 1037782.4503326368 1157691.8367038989 1094794.6023119045 1301335.541564928 1213585.8940846063 1090889.3113558711 1078477.949373577 1049296.1648110745 939618.2026039838 1117797.8977651712 0.9284168921837208 1.035689760213799 0.9794208814498063 1.164195731774685 1.0856934840465753 0.9759271452709843 0.9648237409730264 0.9387172465693009 0.8405975753600677 1.0 20.092227936173416 2.315851043344935 2.147056567784843 0.9266990461403735 1.040854894687467 0.32412849864446236 0.06944701700652178 0.3663726840845793 3.45970520313952 0.03146584739650283 0.022670351121089706 206.94314423381473 -2.315851043344935 0.11415584854709349 RNSPMAQT(ph)PPCHLPNIPGVTSPGTLIEDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSK 30 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 RNS(0.363)PMAQT(0.637)PPCHLPNIPGVTSPGTLIEDSK 176.97 6.7086999999999996e-18 1116300000.0 523210.0 456270.0 418440.0 371530.0 332430.0 540050.0 516500.0 535700.0 630280.0 531490.0 True False 520393.09549409564 471456.6711289611 477352.7148543199 418565.6599061706 374762.99003301933 502717.614640957 491514.9217783925 575676.654229482 474955.9393193026 497569.85316851817 1.045869423519611 0.9475185607141013 0.9593682410912642 0.8412198955397923 0.7531866885554533 1.0103458066031492 0.9878309922685872 1.156976554273899 0.9545512781668535 1.0 18.924539552345397 2.4979411229535105 24.11542036527044 1.0426631771627708 0.9076563704141312 0.2831139390075079 0.08791963248209572 576.0273682923718 667206.2591721831 0.030252837204139293 0.028203402667347964 314.73216046459373 -2.4979411229535105 -0.13500680674863963 RNSS(ph)EASSGDFLDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 RNS(0.37)S(0.539)EAS(0.037)S(0.054)GDFLDLK;RNS(0.375)S(0.553)EAS(0.057)S(0.016)GDFLDLK;RNS(0.103)S(0.744)EAS(0.077)S(0.077)GDFLDLK;RNS(0.188)S(0.533)EAS(0.181)S(0.098)GDFLDLK 101.49 0.0010717 144655000.0 157175.0 144110.0 130351.0 125992.0 127481.0 159595.0 161423.0 133652.0 178171.0 164037.0 True False 156328.7872637841 148906.61423366526 148703.28776879693 141942.57428174932 143714.9497109145 148562.57329621984 153614.35279425659 143625.79091110444 134263.1444190828 153568.01822085865 1.017977499969785 0.9696459976419736 0.9683219819567812 0.9242977537003191 0.9358390593035221 0.967405681322005 1.0003017202014763 0.9352584774815842 0.8742910534014189 1.0 17.228518268892095 4.811286509271713 1.454510709715317 0.9487895870008751 1.0535344115493288 0.25477717848112724 0.035187780671021684 1.9904575551450352 3.3832961919445363 0.00955069969705703 0.31704820019358904 64756.968433934264 -4.811286509271713 0.10474482454845369 RNSS(ph)S(ph)PVS(ph)PASVPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 3 RNS(0.59)S(0.705)S(0.705)PVS(1)PASVPGQR 61.703 0.014176 0.0 60013.0 62719.0 57101.0 57551.0 60379.0 71759.0 69942.0 62775.0 69685.0 62871.0 True False 59689.896676071134 64806.564000563856 65140.32446921065 64836.95069916302 68067.90775562885 66798.46923251635 66558.6382556134 67459.58926499105 52512.065481160105 58858.51895342882 1.0141250194096818 1.1010566550585712 1.1067272100535224 1.1015729218478054 1.1564665398646348 1.134898913874641 1.1308242109910585 1.1461312731699507 0.8921744280162693 1.0 15.844963620002646 1.2433406402291343 24.999984897084765 0.9460871889800306 1.1153613752636926 0.6880396932534809 0.04448430942323573 56.93902560206794 297809.3243657353 0.03161409428181846 0.010710384232544785 17.512197247255184 -1.2433406402291343 0.16927418628366198 RNSSEAS(ph)SGDFLDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 1 RNS(0.008)SEAS(0.979)S(0.013)GDFLDLK 340.75 2.3704e-69 5998000000.0 2133700.0 1636300.0 1485400.0 1288400.0 1415800.0 1949300.0 1825500.0 1745100.0 2287900.0 1671300.0 True False 2122212.3962763567 1690763.2563357637 1694531.4086717498 1451511.307897372 1596093.737895944 1814549.479158628 1737193.5909127893 1875328.2234382466 1724077.7012893197 1564636.2031280813 1.3563615567846043 1.0806111049683782 1.0830194298738436 0.9276989149269679 1.0201053348407583 1.15972612389443 1.1102859485417278 1.1985714121206053 1.1019032397706743 1.0 20.57739582139898 4.739185723298823 23.70717564929648 1.0852403387683662 1.356361717467512 0.5572797418175631 0.07459969658612564 21.487555588189032 814514.7428764644 0.019819869040080422 0.11788348533485796 54851.14822517237 -4.739185723298823 0.27112137869914577 RNST(ph)DSRPVSVTYR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSTDSRPVSVTYR 14 2 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 RNS(0.394)T(0.593)DS(0.012)RPVS(0.001)VT(0.001)YR 101.67 0.0031904 0.0 125610.0 116260.0 106820.0 110250.0 111180.0 124340.0 133390.0 112160.0 156730.0 137130.0 True False 124933.72971658295 120129.643819346 121859.32750391566 124207.63869581289 125338.11398451125 115744.66846487665 126937.41610071581 120529.94873693993 118105.99157440237 128378.24599710052 0.9731690034104737 0.935747664149105 0.9492210035855133 0.9675131306796182 0.9763189472719705 0.9015909787978471 0.988776681865421 0.9388658319857568 0.9199844619864167 1.0 16.970041229459078 -1.617537393354789 5.71872144421365 1.0003223388649394 0.9503967899567485 0.25282901597009544 0.025714541442189848 9.864006362155177e-05 6.5969656803265114e-06 0.02323947018771574 0.005442322397023197 0.02412473806321894 1.617537393354789 -0.0499255489081909 RNSTIPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RNSTIPTK 8 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 106.18 0.0068073000000000005 597440000.0 808510.0 799080.0 676790.0 627160.0 687860.0 781090.0 751060.0 816650.0 1090400.0 834610.0 False True 804157.0719939059 825676.8947459395 772076.1492358648 706558.391695837 775454.8937343588 727095.0867880856 714728.3584721767 877592.5698646755 821685.5306114241 781344.4752544288 1.0291965931314082 1.056738635640925 0.9881379771508002 0.9042853876528157 0.992462247182138 0.9305691789160242 0.9147416806645239 1.1231826648277068 1.0516303072903397 1.0 19.575599211246754 1.737590184705822 24.99999981546415 1.0666674593426806 0.9738685833643577 0.34131006253737584 0.053437126713173654 0.15094693545421273 3641.79305095757 0.02593298071466561 0.014381116432866643 54.650002317916865 -1.737590184705822 -0.09279887597832293 RNTIDS(ph)TSSFSQFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RNTIDSTSSFSQFR 14 1 Q8TDN4-2;Q8TDN4;Q8TDN4-4 Q8TDN4-2 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 RNT(0.061)IDS(0.396)T(0.396)S(0.124)S(0.018)FS(0.005)QFR 118.71 0.00037753 0.0 85785.0 101460.0 90061.0 101080.0 111060.0 123980.0 112330.0 108900.0 155360.0 128240.0 True False 85323.14309160953 104837.0347661348 102740.80597575482 113876.71763603413 125202.83269580707 115409.55441752788 106896.16875772864 117026.67098299527 117073.60971734296 120055.61340821219 0.7106968234920796 0.8732372588832537 0.8557767776040285 0.9485330540008269 1.0428736244934533 0.9613007767084841 0.8903887600345775 0.9747705056079475 0.975161480532111 1.0 16.873343335288432 5.08711170365008 0.8278023501807819 0.9680859282792341 0.4255946043289135 0.7768418588711596 0.0425023344102967 1.9235854288741103 0.6856330587918322 0.015110891449295562 1.0897393512169578 122211.39562028117 -5.08711170365008 -0.5424913239503206 RPAAAAAAGSAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPAAAAAAGSASPR 14 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 RPAAAAAAGS(0.002)AS(0.998)PR;RPAAAAAAGSAS(1)PR;RPAAAAAAGSAS(1)PR;RPAAAAAAGS(0.006)AS(0.994)PR;RPAAAAAAGS(0.007)AS(0.993)PR;RPAAAAAAGS(0.007)AS(0.993)PR 205.45 1.2955e-08 2825790000.0 728957.0 989296.0 895955.0 907450.0 877620.0 899419.0 888557.0 804313.0 947598.0 951460.0 True False 725032.3765067372 1022224.1193179381 1022097.6762195352 1022333.076957056 989379.7049387185 837244.2815345902 845574.1032926298 864334.9202786569 714075.1700626587 890737.0082141119 0.8139690726002222 1.1476160863322071 1.1474741329865654 1.1477384093502394 1.1107427846995834 0.93994554376182 0.9492971499948882 0.9703592781124138 0.8016677913656554 1.0 19.76464001061547 2.730884916077866 22.54441484602202 0.9352029197197793 1.0858583407197926 0.3095364797260074 0.10462795168382039 180.60847943145603 530465.1181653317 0.03310345210506629 0.031838525323175756 538.1271650217856 -2.730884916077866 0.15065542100001328 RPADESNLSPSEVVQWSNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPADESNLSPSEVVQWSNHR 20 1 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30 E9PP16 PPFIBP2 Liprin-beta-2 0 ; 171.21 5.303e-12 717230000.0 122625.0 167051.0 180152.0 208564.0 188343.0 172131.0 180633.0 155887.0 165314.0 186802.0 False True 121964.80062491831 172611.19155053803 205515.83569074495 234968.18101545153 212327.3646535783 160231.9891227898 171895.0917049301 167520.0795181469 124574.5797941094 174880.13643076163 0.6974194045943376 0.9870257141460893 1.17518112625737 1.343595595309247 1.2141308269029327 0.9162389302356742 0.9829309103551999 0.9579137055652475 0.7123426498665322 1.0 17.416006906061934 2.710853118146785 23.360178992856596 0.9209698958130257 1.097658908061458 0.1868153687141917 0.17535367479902975 586.3681736711802 494365.17914544296 0.06085355921249734 0.057390154599495175 513.8698273208039 -2.710853118146785 0.17668901224843236 RPAEAT(ph)SS(ph)PTS(ph)PERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 3 RPAEAT(0.779)S(0.26)S(0.923)PT(0.413)S(0.625)PERPR 70.358 0.069866 174170000.0 67163.0 94561.0 61500.0 88040.0 77398.0 85337.0 81321.0 90572.0 95670.0 95804.0 True False 66801.4018705108 97708.40572166845 70158.66543241714 99185.85497305544 87254.1765261126 79437.8540516904 77387.1925536121 97330.9425552971 72093.41041232113 89689.70669806901 0.7448056675599433 1.0894048973824113 0.7822376503983777 1.105877793835966 0.9728449310225156 0.8856964413888608 0.8628324854949962 1.085196352385804 0.8038091891081329 1.0 16.452654802288652 4.765805162903041 23.561838709500385 0.9563998653480326 0.7448050227917626 0.23807746477370795 0.11232282308439384 5794.891045997176 5011401.8037209315 0.024741636821048726 1.939549425552638 58318.34125885927 -4.765805162903041 -0.21159484255626992 RPAEAT(ph)SSPT(ph)SPERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 RPAEAT(0.398)S(0.113)S(0.491)PT(0.71)S(0.287)PERPR;RPAEAT(0.739)S(0.023)S(0.26)PT(0.632)S(0.346)PERPR 113.73 0.0010237 662090000.0 371826.0 424425.0 371574.0 418865.0 423505.0 459714.0 417790.0 430615.0 438060.0 430837.0 True False 369824.130129752 438551.72955466964 423888.38942089456 471893.26605280454 477435.8514392022 427935.05323035474 397579.9015872115 462749.67791866435 330105.98270326515 403340.6138018864 0.9169027801187483 1.0872987111832937 1.0509439786520007 1.1699621855700104 1.1837038847610573 1.0609768483184505 0.9857175002527655 1.147292541548912 0.8184298119440242 1.0 18.62163915759317 2.46260733197116 14.01253298581563 1.016373001283859 1.088964659723479 0.13663975692384367 0.10203873207818358 3.5472487185902883 3414.917929010588 0.035533601248436596 0.029874205756217912 290.1398164528159 -2.46260733197116 0.07259165843962001 RPAEATS(ph)SPT(ph)SPERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 RPAEAT(0.043)S(0.889)S(0.069)PT(0.93)S(0.069)PERPR 113.7 0.00070747 812800000.0 264760.0 285690.0 254360.0 284620.0 305900.0 290440.0 299040.0 243960.0 307920.0 286020.0 True False 263334.5615776012 295199.018946748 290171.67706324597 320652.862817254 344854.5517886489 270362.56642221933 284574.2927562645 262165.53400377894 232037.24191660786 267765.9587259582 0.9834504835138799 1.1024516348206377 1.0836765003434161 1.1975116790160105 1.2878954196772492 1.0096973032293421 1.0627724827692104 0.9790846276769971 0.8665673673406841 1.0 18.030613035924716 1.9350830020124479 1.573444662403777 0.9363864674019317 1.1243349099663378 0.42465697982504225 0.0861831583383326 0.3744836595408541 1.7271458401463944 0.061122928964774115 0.028069568729810614 86.11583203443199 -1.9350830020124479 0.18794844256440613 RPAEATS(ph)SPTS(ph)PERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 RPAEAT(0.092)S(0.719)S(0.189)PT(0.091)S(0.909)PERPR;RPAEAT(0.011)S(0.561)S(0.428)PT(0.106)S(0.895)PERPR 155.75 1.1286e-06 10585700000.0 1237830.0 1460490.0 1298530.0 1408880.0 1438030.0 1369540.0 1255100.0 1394780.0 1507610.0 1365660.0 True False 1231165.6608158418 1509101.526765152 1481351.7369749076 1587244.0635442773 1621154.5966284117 1274866.9233503856 1194386.0180523922 1498865.5661493305 1136079.716439002 1278502.4095996502 0.9629748458599844 1.1803665878406218 1.1586616699758725 1.2414869550705865 1.2680105914982667 0.9971564494349268 0.9342070918946502 1.1723603764021726 0.8886019360688993 1.0 20.28602344896059 2.7174115449467795 24.54841633109881 1.0171771598261719 1.1675009579730298 0.3812563232771531 0.1028805365355702 760.9817813949852 883294.9289985643 0.03377044020501853 0.031871699331969316 521.6888382936604 -2.7174115449467795 0.15032379814685792 RPAEATSS(ph)PT(ph)SPERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 RPAEAT(0.318)S(0.281)S(0.408)PT(0.59)S(0.403)PERPR;RPAEAT(0.005)S(0.323)S(0.672)PT(0.675)S(0.325)PERPR 93.062 0.0050318 574350000.0 319611.0 326732.0 299324.0 369370.0 347862.0 332144.0 318245.0 312185.0 353260.0 316480.0 True False 317890.2498881201 337607.07710633514 341466.21742915217 416132.2041276408 392160.16376038874 309183.66706287564 302850.27353603946 335481.8299433091 266203.80644148134 296281.9754478403 1.072931451221824 1.1394789595149368 1.1525041876510185 1.4045140731178223 1.3236045262882608 1.0435453138704573 1.022169077542672 1.1323059036453935 0.8984812729127556 1.0 18.176611335892996 2.6851437870367234 11.279177519618317 1.0362064632741974 1.2208395658164104 0.4771479612599625 0.10355065646621857 1.0401288448759494 217.96582475666816 0.03613905372052949 0.034081943418598354 484.3326948246079 -2.6851437870367234 0.184633102542213 RPAEATSS(ph)PTS(ph)PERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 RPAEAT(0.097)S(0.08)S(0.821)PT(0.178)S(0.824)PERPR 137.45 5.8792e-05 9715300000.0 977050.0 1265400.0 1059800.0 1228300.0 1181300.0 1143600.0 1194100.0 1007100.0 1279700.0 1165900.0 True False 971789.6713604595 1307518.0740495478 1209010.628053264 1383802.6540595626 1331731.5528863382 1064545.6237448356 1136336.8210950205 1082254.9159501789 964335.0821014666 1091491.2638227919 0.8903320654687655 1.197918954907759 1.1076686256002428 1.267809189065785 1.2201028052410965 0.9753130043537105 1.0410865013386947 0.9915378636744522 0.8835023367241814 1.0 20.057869152525097 2.7232156468125397 24.298983625940558 0.9841551793551927 1.1458273148799094 0.37517332800413283 0.10178398557304147 600.695485998765 951208.375999596 0.03279914848834827 0.031040497580751496 528.7077138512827 -2.7232156468125397 0.1616721355247167 RPAEATSSPT(ph)SPERPR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 RPAEATSSPT(0.5)S(0.5)PERPR;RPAEATS(0.001)S(0.004)PT(0.972)S(0.023)PERPR;RPAEAT(0.004)S(0.013)S(0.097)PT(0.778)S(0.107)PERPR;RPAEAT(0.004)S(0.017)S(0.139)PT(0.42)S(0.42)PERPR;RPAEATSSPT(0.876)S(0.123)PERPR 211.41 1.1528e-11 16466730000.0 878658.0 915426.0 869924.0 915868.0 932069.0 939180.0 907958.0 888190.0 1042240.0 867391.0 True False 873927.402956082 945895.4010232963 992401.7376850429 1031816.7948939379 1050762.4623442125 874256.6971919149 864036.6028036127 954471.2479374341 785393.9173004861 812033.3637692046 1.076221054390653 1.1648479523461277 1.2221194127771116 1.2706581292479997 1.2939892733802243 1.0766265725017616 1.0640407664939102 1.1754089062388735 0.9671941478548781 1.0 19.631179478639794 2.7092412120112623 23.267623598639975 1.07691075301992 1.2078407111834706 0.4767524160059904 0.07652725038445156 311.50233219883364 247204.68293312762 0.02586996628763928 0.02439554230815601 511.9661082899019 -2.7092412120112623 0.13092995816355057 RPAEATSSPTS(ph)PERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 RPAEATSSPT(0.002)S(0.998)PERPR;RPAEAT(0.001)S(0.004)S(0.02)PT(0.145)S(0.83)PERPR 137.05 7.3701e-06 2749490000.0 213073.0 235461.0 212935.0 167492.0 251959.0 245097.0 273112.0 212208.0 311063.0 251830.0 True False 211925.83864263573 243298.1770458196 242914.39713580106 188696.47002665832 284044.48517200456 228154.02128627864 259900.52917084278 228044.03853039004 234405.69168065063 235757.99379748988 0.8989126316737944 1.0319827257047605 1.0303548703610803 0.80038206546983 1.204813803327456 0.9677467033514764 1.1024038887694758 0.9672801963452152 0.9942640243282659 1.0 17.846947163328604 4.745512415938371 23.71635860480326 1.0109643713109842 0.8989125219775992 0.1061301587640705 0.09760976020850026 891.4263988442591 3040970.642269866 0.02167247235267798 0.20830139698620895 55656.054540367375 -4.745512415938371 -0.11205184933338497 RPAEDDVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPAEDDVPR 9 1 Q96EI5;Q96EI5-2;A2RQR6;D6RD44 Q96EI5 TCEAL4 Transcription elongation factor A protein-like 4 0 113.44 0.0028849 255460000.0 150930.0 203410.0 163460.0 172980.0 173150.0 183730.0 161470.0 139590.0 134480.0 176670.0 False True 150117.40964989955 210180.37888605826 186473.74718021022 194879.25026396083 195199.62615954428 171029.17755389874 153659.0792246988 150006.91462365736 101339.20593967734 165394.76934520318 0.9076309380533217 1.270780084026605 1.127446459875718 1.1782673118109268 1.1802043494624306 1.0340664232067445 0.9290443696196324 0.9069628696090799 0.6127110690433476 1.0 17.335554084042368 2.1640801834642285 1.5442938953021623 0.8236471301404787 1.1424796811587805 0.513264014454448 0.1257788852846213 0.29270568816001863 1.3501384179606104 0.07043265902310178 0.039399944789969936 145.90836249228224 -2.1640801834642285 0.31883255101830177 RPAEDMEEEQAFK ddPTM_BT-474_Trastuzumab_2h_R1 6 RPAEDMEEEQAFK 13 1 P61978;P61978-2;S4R457;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;; 254.4 1.3289000000000002e-23 12089390000.0 5990220.0 5320330.0 4840140.0 4425420.0 4547600.0 5848670.0 5747180.0 5292990.0 6672370.0 5348640.0 False True 5957969.321096007 5497413.9678426 5521589.6407489395 4985677.718251468 5126709.904263035 5444365.209188276 5469166.947040352 5687979.791058625 5028053.818677314 5007285.215998911 1.1898601865257323 1.0978831304191872 1.102711230250428 0.9956847879009558 1.0238501869001884 1.0872888150634676 1.0922419457085588 1.1359408433305953 1.0041476771908346 1.0 22.255597203293476 RPAEDMEEEQAFKR ddPTM_BT-474_Trastuzumab_2h_R1 7 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;S4R457;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;;;;; 226.93 1.2485e-12 8610710000.0 3728470.0 3919710.0 3508460.0 3641250.0 3523480.0 4150510.0 4260410.0 3940620.0 5442920.0 4539210.0 False True 3708396.3317919555 4050175.177835271 4002420.6719190003 4102231.8766542273 3972174.292697842 3863595.012949615 4054317.6919532986 4234689.074462903 4101585.297391347 4249513.731586796 0.8726636895481253 0.9530914437880659 0.9418538036879034 0.9653414804056715 0.9347361942079443 0.9091852049403599 0.9540662645274921 0.9965114462359066 0.96518932669969 1.0 22.018866333594538 1.949800770627191 4.811053739135037 0.9851265377187075 0.9327892385061842 0.5039233208612417 0.02548862480703921 0.1861311816479408 9.254355585464161 0.011298270342034593 0.006849240061512435 89.08421771406734 -1.949800770627191 -0.05233729921252328 RPAEDYVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPAEDYVPR 9 1 Q969E4;Q5H9L2 Q969E4 TCEAL3;TCEAL5 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5 0 ;;; 110.53 0.0036421 1220500000.0 1141420.0 1317160.0 1228090.0 1291810.0 1345600.0 1574710.0 1480740.0 1451730.0 1976540.0 1632080.0 False True 1135274.7215436825 1361000.8743599644 1400994.3972503631 1455353.013547737 1516954.184003943 1465854.0041686182 1409110.9492238858 1560065.4643355694 1489448.2012790758 1527919.2571060115 0.7430201015294317 0.8907544479397409 0.9169296026178417 0.9525064932451207 0.9928235258171711 0.9593792324766236 0.922241762887944 1.0210392054946968 0.9748212769437813 1.0 20.54313687549196 5.690242887225665 0.74039352983499 0.9796943400489532 1.8176177136132776e-11 0.8816385710648401 0.025907108337006584 3.0607163342823105 0.44716080695657373 0.009422183430454359 3.4566487498097977 490052.8138476812 -5.690242887225665 -0.979694340030777 RPAGGRPS(ph)PSAMGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPAGGRPSPSAMGK 14 2 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 RPAGGRPS(0.998)PS(0.002)AMGK;RPAGGRPS(1)PSAMGK;RPAGGRPS(0.997)PS(0.003)AMGK 113.33 0.00042669 1609730000.0 1682170.0 1704330.0 1533940.0 1537850.0 1622310.0 1982820.0 1899600.0 1780230.0 2464940.0 1852560.0 True False 1673113.3836266564 1761057.5937607572 1749905.4187545045 1732541.6523206888 1828901.5623152764 1845752.320456223 1807709.0908233013 1913079.8024247712 1857488.565503778 1734328.034743588 0.964704110242915 1.0154120549755867 1.0089817979637397 0.9989699858463262 1.054530357393243 1.0642463729355034 1.042310943840888 1.1030668732213689 1.0710134001716687 1.0 20.725945368309997 3.197545112484185 4.004537204696327 1.0641894877900302 0.9985987761097644 0.507856074077329 0.027773822312760283 0.16041151257708858 5.438018033347514 0.008007444127088866 0.010087174106382013 1575.9597175832407 -3.197545112484185 -0.06559071168026576 RPAMLDNEADGNK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPAMLDNEADGNK 13 1 Q93009;A0A669KBL1;Q93009-3;H3BND8 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 76.311 0.046521 438720000.0 199620.0 189750.0 178840.0 175040.0 177380.0 261300.0 211370.0 163740.0 264710.0 236860.0 False True 198545.26809986678 196065.71404370255 204019.11749485342 197200.0460527445 199968.29158637006 243236.9460340379 201145.22558818758 175959.1102548727 199475.76743227223 221743.39201395147 0.895383020421077 0.8842009327221199 0.9200685334605917 0.8893164493503248 0.9018004539850668 1.0969298513244268 0.9071080935549687 0.7935258347802394 0.8995793093113764 1.0 17.758531587077027 -1.971456207509391 10.629203137368354 1.0469581408659234 0.905570288468227 0.12483349514024145 0.07089409454653184 0.05507341652305814 0.00014789480882200265 0.0479197652667727 0.01745411704612448 0.010679324730805463 1.971456207509391 -0.14138785239769647 RPAPAVS(ph)PGSWKPGPPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPAPAVSPGSWKPGPPGSPR 20 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 RPAPAVS(1)PGS(0.018)WKPGPPGS(0.982)PR;RPAPAVS(0.967)PGS(0.033)WKPGPPGS(1)PR 67.778 0.011739 506120000.0 683930.0 586930.0 540270.0 481520.0 532940.0 671660.0 649760.0 585710.0 775960.0 679270.0 True False 680247.7968717657 606465.6102433226 616335.319888976 542480.3826286425 600806.7500171378 625229.7251175728 618328.6264757569 629418.654375116 584735.0553312917 635918.4070476951 1.069709241520266 0.9536846292260832 0.9692050317435609 0.8530660169866028 0.9447859086300613 0.9831917399910699 0.9723395637286232 0.9897789518269258 0.9195127061126813 1.0 19.278482143564204 -0.048795133349852304 9.014028804494872 0.9999999336266114 0.9611864293789385 0.04651243190299381 0.05198041367102807 0.0 0.0 0.04983982757274648 0.011747360016619104 0.893726975787827 0.048795133349852304 -0.038813504247672936 RPAPAVS(ph)PGSWKPGPPGS(ph)PRPWK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPAPAVSPGSWKPGPPGSPRPWK 23 3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 RPAPAVS(1)PGSWKPGPPGS(1)PRPWK;RPAPAVS(0.999)PGS(0.001)WKPGPPGS(1)PRPWK 118.55 0.00039097 4483400000.0 2795560.0 2459400.0 2121010.0 2219350.0 2315900.0 3298200.0 3096800.0 2750020.0 4382800.0 3449400.0 True False 2780509.015575915 2541259.642261303 2419629.771850591 2500319.4824449164 2610816.1375852632 3070203.1971276803 2946995.9530751687 2955240.4567186064 3302717.6665111384 3229256.3388200854 0.8610369459216933 0.7869488747956861 0.7492838963458324 0.7742709838137192 0.8084883526277169 0.9507462012908766 0.9125927594066287 0.9151458251215822 1.022748682663543 1.0 21.622770536155908 2.7725767633741967 4.323604810121475 0.94859000991229 0.7897267287862407 0.7910946401649995 0.042000452120948766 0.10217066850442438 4.487663120667604 0.013685227208326517 0.014112193337861276 592.3477775818047 -2.7725767633741967 -0.1588632811260493 RPAS(ph)MGSEGLGGDADPMK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPASMGSEGLGGDADPMK 18 1 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 RPAS(0.963)MGS(0.037)EGLGGDADPMK 136.77 3.4139e-06 157590000.0 270920.0 242490.0 234020.0 231880.0 217620.0 343960.0 309990.0 287810.0 407860.0 340850.0 True False 269461.3968220419 250561.13306169971 266967.9818616955 261235.9842248079 245332.61706520387 320182.8547947483 294994.59942320216 309287.8436695673 307348.36804399756 319096.66118363343 0.844450693474892 0.7852201653639586 0.8366367133752647 0.8186735118311754 0.7688347980677244 1.003403964200333 0.9244678346961424 0.9692606701753569 0.9631826509996763 1.0 18.283633987726507 2.737408080915026 24.99987997341631 0.9661554909607099 0.8112209999478455 0.8833327649035011 0.029270448890642106 31.999003076618813 694089.7997235935 0.00872436204598666 0.008658689404950343 546.270918578095 -2.737408080915026 -0.15493449101286438 RPAS(ph)MGSEGLGGDADPMKR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPASMGSEGLGGDADPMKR 19 2 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 RPAS(0.997)MGS(0.003)EGLGGDADPMKR;RPAS(0.996)MGS(0.004)EGLGGDADPMKR 109.23 0.00020433 539970000.0 175136.0 151944.0 161316.0 157651.0 147289.0 212324.0 228462.0 207696.0 281720.0 232492.0 True False 174193.0872354388 157001.36418791238 184027.89061619222 177609.60043567864 166045.3810997002 197646.54163693462 217410.4202504065 223195.33017891806 212293.88085459475 217654.1615135849 0.8003204993834522 0.7213340792388806 0.8455059592541083 0.8160174802106558 0.7628863144403351 0.9080760977069511 0.9988801442550723 1.025458592782235 0.9753724871524886 1.0 17.73167807893026 2.487562379766412 2.737465651335075 1.0050479349915673 0.7899758302703281 0.8980153228354961 0.03346447560948334 0.07869193354464576 1.1958289834245712 0.01263249744470129 0.010835586305466906 307.29987228814235 -2.487562379766412 -0.21507210472123917 RPAS(ph)PALLLPPCMLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPASPALLLPPCMLK 15 1 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 RPAS(1)PALLLPPCMLK;RPAS(1)PALLLPPCMLK 141.85 2.8736000000000007e-06 1026330000.0 1221390.0 1374650.0 1299680.0 1297510.0 1206830.0 1433830.0 1413260.0 1388530.0 1632780.0 1450840.0 True False 1214814.1719491868 1420404.3942565278 1482663.6469789266 1461774.6329633037 1360512.6470581724 1334712.7069727678 1344895.214622518 1492149.1594124718 1230403.2471310715 1358246.1490733845 0.8943991284480732 1.0457636086253943 1.091601583402553 1.076222181053521 1.0016686945781765 0.9826736544648615 0.9901704602954519 1.0985852309836754 0.9058764848849162 1.0 20.37331352598141 RPAS(ph)PELLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPASPELLR 9 1 Q99929 Q99929 ASCL2 Achaete-scute homolog 2 1 RPAS(1)PELLR;RPAS(1)PELLR;RPAS(1)PELLR;RPAS(1)PELLR 122.39 0.0003596 1068260000.0 255337.0 512404.0 429239.0 524949.0 518567.0 412099.0 378286.0 324044.0 317706.0 394942.0 True False 253962.29396260748 529459.0573852411 489672.12018772855 591407.4895757671 584603.433662584 383611.56610670115 359986.86098714604 348225.80874209065 239411.61334228973 369736.46343314275 0.6868738116994781 1.4319903762507322 1.3243814679270145 1.5995379089320136 1.581135461280503 1.0375270065189752 0.9736309414671521 0.9418216572655087 0.6475196174033322 1.0 18.496137803653337 2.5334250137790355 4.909333721117909 0.9049667860958396 1.3459695171325379 0.3958160917672059 0.25388595696571253 0.2173869599053944 11.046333281354025 0.08588501799024817 0.07892094213676507 341.5269768112628 -2.5334250137790355 0.4410027310366983 RPAS(ph)PS(ph)SPEHLPATPAESPAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 RPAS(0.99)PS(0.679)S(0.328)PEHLPAT(0.004)PAESPAQR;RPAS(0.991)PS(0.929)S(0.08)PEHLPATPAESPAQR;RPAS(0.987)PS(0.573)S(0.44)PEHLPATPAESPAQR;RPAS(0.995)PS(0.941)S(0.064)PEHLPATPAESPAQR 197.73 2.0093999999999998e-22 11100000000.0 2590390.0 3019830.0 2880940.0 3009160.0 2704770.0 3180240.0 3110410.0 2673860.0 3106580.0 3018460.0 True False 2576443.628059383 3120343.216024215 3286551.310420622 3390119.3474638723 3049206.4270721953 2960397.4942797087 2959947.5853799223 2873397.010785964 2341004.985039285 2825819.2985663814 0.9117510200905224 1.1042260266278363 1.1630436921738 1.1996943149138293 1.0790521632501924 1.0476244874474467 1.0474652738345966 1.0168367850852034 0.8284340708646669 1.0 21.43023778255536 1.5497594824666603 2.608415364773535 0.9150122070641188 1.0881010324683016 0.3717513274562212 0.08303633839793685 0.24941021334504457 3.695811303692482 0.06221434681483882 0.022704697467399722 35.46169436920126 -1.5497594824666603 0.1730888254041828 RPAS(ph)PSHNGSSGGGYGASK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPASPSHNGSSGGGYGASK 19 1 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 RPAS(0.672)PS(0.327)HNGS(0.001)SGGGYGASK;RPAS(0.814)PS(0.182)HNGS(0.005)SGGGYGASK;RPAS(0.782)PS(0.209)HNGS(0.007)S(0.002)GGGYGASK 230.61 3.2428e-20 329303000.0 220887.0 233409.0 238073.0 213755.0 248928.0 287434.0 274909.0 263727.0 278273.0 280287.0 True False 219697.76893485253 241177.87746628025 271591.60903238837 240816.3610832063 280627.50528814935 267564.3641268564 261610.60141563634 283407.647918571 209696.34781716147 262398.84369422664 0.8372665284716968 0.9191270589108419 1.0350335588706865 0.9177493227212145 1.069469290860003 1.0196857591287602 0.9969960146641925 1.0800643933051242 0.7991511885681959 1.0 18.001401836922227 4.507717699495523 3.115346709886703 0.9985344253374213 0.8402699593967394 0.26968752708887367 0.07757243894465446 0.3133481192747612 5.6646102854304345 0.018270392742085344 0.09122507691900875 32189.757094885204 -4.507717699495523 -0.1582644659406819 RPAS(ph)PSS(ph)PEHLPATPAESPAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 RPAS(0.843)PS(0.326)S(0.804)PEHLPAT(0.027)PAESPAQR 81.53399999999998 0.018529 344410000.0 59834.0 80682.0 71287.0 69157.0 75848.0 77259.0 77391.0 67275.0 71082.0 70403.0 True False 59511.860392182316 83367.45159670102 81323.58996228832 77912.26910917304 85506.7932136824 71918.26717812371 73647.30166766995 72295.40211552805 53564.79355000106 65909.82026495929 0.9029285795795376 1.264871475321304 1.233861504027249 1.182104105214725 1.2973300923890059 1.091161634017667 1.117394970455173 1.0968836180238173 0.8126982190919216 1.0 16.00820581583053 1.4252220980947083 3.6520953249495505 0.9085434972971146 1.16445322896552 0.4218134141425496 0.11343559021172775 0.19824649756058915 4.65283729835853 0.08117935697939835 0.02827651060678022 26.620861019499454 -1.4252220980947083 0.25590973166840547 RPAS(ph)PSSPEHLPATPAESPAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 RPAS(0.97)PS(0.017)S(0.013)PEHLPATPAESPAQR;RPAS(0.572)PS(0.158)S(0.27)PEHLPATPAESPAQR;RPAS(0.91)PS(0.064)S(0.026)PEHLPATPAESPAQR;RPAS(0.789)PS(0.105)S(0.105)PEHLPATPAESPAQR 171.0 3.9925e-12 3691780000.0 432350.0 616476.0 550541.0 620344.0 580777.0 587409.0 583479.0 554719.0 579858.0 618095.0 True False 430022.27563860064 636995.0309923883 628052.3874118439 698879.4867946971 654735.5084150258 546802.798442051 555253.8916637648 596114.9485860063 436959.7655991181 578647.6479222468 0.7431504771214121 1.1008340451735175 1.085379660086747 1.2077807441267019 1.131492559878171 0.9449667693378841 0.9595716731201067 1.030186419536102 0.7551396210943081 1.0 19.142325599278553 2.717043927837742 23.046700307427976 0.9491342441990608 1.0666614898928395 0.153110545681588 0.13312108384933205 577.6575005961469 618731.3827974959 0.04328970119502235 0.04086455059350664 521.2474313573041 -2.717043927837742 0.1175272456937787 RPAS(ph)VSSSAAVEHEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 RPAS(0.939)VS(0.061)SSAAVEHEQR;RPAS(0.998)VS(0.002)SSAAVEHEQR;RPAS(0.995)VS(0.003)S(0.002)SAAVEHEQR;RPAS(0.9)VS(0.1)SSAAVEHEQR;RPAS(0.945)VS(0.055)SSAAVEHEQR 241.44 4.0688e-20 5927627000.0 1208005.0 1052558.0 921210.0 1065648.0 954308.0 1082707.0 946543.0 963927.0 1292824.0 1051553.0 True False 1201501.2353019733 1087591.7567452525 1050908.3606991384 1200558.9275366482 1075833.4671733303 1007862.0135081332 900755.098944598 1035860.1274621275 974224.848154057 984441.987260184 1.220489628490847 1.1047799370810527 1.06751680068415 1.219532428597385 1.0928358207957984 1.0237901537632805 0.9149905333187827 1.05223074682648 0.9896213903527596 1.0 19.908946665674826 2.8071387624340924 3.1157815532676794 0.9952465251286474 1.1441554307884971 0.6495408798242073 0.05443913517129735 0.1686580416282538 3.2267912019996765 0.017564119983623946 0.018328860412519753 641.4144836730122 -2.8071387624340924 0.1489089056598497 RPASPS(ph)HNGSSGGGYGASK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPASPSHNGSSGGGYGASK 19 1 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 RPAS(0.208)PS(0.758)HNGS(0.029)S(0.004)GGGYGASK 233.8 2.4754e-24 268960000.0 159890.0 172400.0 186340.0 151870.0 158520.0 202930.0 190220.0 177890.0 213080.0 182900.0 True False 159029.17000544918 178138.2297819992 212575.0523036847 171096.72642841822 178706.58237834802 188901.92674583747 181018.3318890337 191165.0551071166 160569.28912571716 171227.1654114321 0.9287613307346819 1.040361962156886 1.2414797137644609 0.9992382109304884 1.0436812520311485 1.1032240491275767 1.0571823194881196 1.1164411596009132 0.937755926402766 1.0 17.385552079769965 1.233749391740861 24.998788870934533 0.9688779385327339 1.0712353261113687 0.1962756921754607 0.0783450566209842 192.97992028848617 1002652.6994147359 0.06554406933603792 0.018478615134124673 17.129685591618543 -1.233749391740861 0.10235738757863488 RPASPS(ph)SPEHLPATPAESPAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 RPAS(0.267)PS(0.367)S(0.367)PEHLPATPAESPAQR 105.32 0.00024575 836990000.0 32273.0 37535.0 36448.0 37854.0 40130.0 44211.0 45057.0 34602.0 40759.0 38549.0 True False 32099.245753867388 38784.32978461337 41579.56158830474 42646.312518741935 45240.31763085483 41154.797631499605 42877.42077554506 37184.176945395775 30714.490592618313 36088.76981654068 0.8894524783484097 1.0746924869363996 1.1521468257210434 1.1817059083902528 1.2535843660184751 1.1403768496602231 1.1881097913149958 1.0303531301960045 0.8510816730178717 1.0 15.139262345455005 1.4966770278321144 4.434528280396871 0.9268052037121939 1.1316804864468926 0.40358283549756957 0.09721861884381602 0.1726872323722517 7.277987434621718 0.06394321667131714 0.025956427043928292 31.381740571601075 -1.4966770278321144 0.20487528273469868 RPASVSSSAAVEHEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 0 ;;;; 166.77 4.257600000000001e-09 1219748000.0 580900.0 755652.0 694478.0 702617.0 748569.0 766960.0 729965.0 616248.0 689156.0 728663.0 False True 577772.498944057 780803.4200187206 792254.4658890123 791568.240159056 843894.8250339241 713941.8604296424 694653.8042129033 662235.5550039387 519322.73801728355 682159.1035002201 0.8469761613961524 1.1446060252107573 1.1613924989403248 1.1603865375356683 1.2370938402842142 1.0465914135959515 1.018316402505767 0.9707933993784561 0.7612926886888873 1.0 19.37974874016797 1.859727213523722 1.6662985521704667 0.8879542160250222 1.114180464975331 0.36501039616573294 0.11285676638105578 0.36846498130954364 1.9303331561749615 0.07787030363900203 0.034116234817180964 72.39810745278277 -1.859727213523722 0.22622624895030885 RPATADS(ph)PKPSAK ddPTM_BT-474_Trastuzumab_2h_R1 5 RPATADSPKPSAK 13 2 Q03111 Q03111 MLLT1 Protein ENL 1 RPAT(0.001)ADS(0.999)PKPSAK;RPAT(0.001)ADS(0.994)PKPS(0.006)AK;RPAT(0.001)ADS(0.999)PKPSAK;RPATADS(0.955)PKPS(0.045)AK;RPATADS(0.979)PKPS(0.021)AK 165.16 2.8196e-05 5848470000.0 9095500.0 6600230.0 6003220.0 5479410.0 5695680.0 8484800.0 8400200.0 8039100.0 13250800.0 8025200.0 True False 9046530.83860504 6819914.665626707 6848421.195076347 6173102.744183434 6420991.087059741 7898265.747070805 7993850.234119749 8639018.463722646 9985317.891623119 7513024.865280609 1.2041129905494006 0.9077455203353684 0.9115398015950212 0.8216534425049944 0.854647921735571 1.0512764018086087 1.0639989055621448 1.1498722044226832 1.329067595365954 1.0 22.840962446374203 2.1914244006182706 1.7785080161503788 1.1704921572238915 0.933463906665129 0.3557579833370824 0.12428505003924897 0.3628112525182413 2.264666943541505 0.06635653571679172 0.03984555949225819 155.39047727931523 -2.1914244006182706 -0.23702825055876253 RPDADLK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPDADLK 7 1 P27824;P27824-2;P27824-3;D6RGY2;D6RFL1;H0Y9H1 P27824 CANX Calnexin 0 ;; 108.74 0.01152 7296300000.0 5489300.0 6910500.0 8028200.0 5010500.0 7146400.0 9021900.0 7237400.0 5651800.0 9279700.0 6870300.0 False True 5459746.218718563 7140511.815014537 9158500.777634677 5644828.786261867 8056451.679968614 8398237.288268216 6887299.3124471195 6073566.015258883 6992842.276609346 6431831.5720402505 0.8488633692543459 1.110183271286982 1.4239335522166814 0.877639397586287 1.2525905863254774 1.3057302875865262 1.070814624933095 0.9442980505990269 1.0872240975662142 1.0 22.616798197022018 2.002286683015656 24.985730567351172 1.0051277750175553 1.145738047094257 0.0995854529867719 0.16915959303189296 149.3028381449737 1631356.077455868 0.06313896388308667 0.04633716782430859 100.52791681831694 -2.002286683015656 0.14061027207670174 RPDDVPLSLS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPDDVPLSLSPSK 13 1 Q9UFC0;F8WDB4 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 RPDDVPLS(0.021)LS(0.964)PS(0.015)K 64.331 0.033731 0.0 241160.0 246130.0 265000.0 232220.0 215180.0 300390.0 269120.0 242980.0 347070.0 280930.0 True False 239861.62135539466 254322.28826127283 302309.6965787081 261619.02818994672 242581.89752821665 279624.74634199974 256101.63746176384 261112.40142743944 261539.24899973097 263000.8068837266 0.9120185759028417 0.967001931570915 1.1494630003639497 0.9947461047357516 0.9223617995798118 1.063208701354375 0.9737674971278208 0.9928197731457074 0.9944427627378276 1.0 18.004707700134485 3.50392716482901 24.986226356861387 0.9901174257862259 1.0163884395716059 0.012742451048055492 0.0643156982805939 3174.7047500785716 2959185.733932679 0.017342264636812488 0.02677232142610775 3191.002649788116 -3.50392716482901 0.026271013785379993 RPDDVPLSLS(ph)PSKR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPDDVPLSLSPSKR 14 2 Q9UFC0;F8WDB4 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 RPDDVPLS(0.192)LS(0.794)PS(0.013)KR;RPDDVPLS(0.03)LS(0.94)PS(0.03)KR;RPDDVPLS(0.007)LS(0.964)PS(0.029)KR;RPDDVPLS(0.059)LS(0.937)PS(0.004)KR;RPDDVPLS(0.123)LS(0.864)PS(0.013)KR;RPDDVPLS(0.015)LS(0.985)PSKR 220.34 3.6815e-12 6783870000.0 5285340.0 4498770.0 3937820.0 3693410.0 3640730.0 5303100.0 5576430.0 4652640.0 7807660.0 5796370.0 True False 5256884.316696473 4648508.839886102 4492230.8278549835 4160995.3273061435 4104355.385202639 4936509.179154634 5306676.776868698 4999843.622427205 5883566.810283923 5426440.704077977 0.9687536643947696 0.8566404929833181 0.8278411343330567 0.7668001097255427 0.7563623393356553 0.9097140185176705 0.9779295612464215 0.921385470713762 1.0842405051735688 1.0 22.371574789035556 2.444877072216657 3.772845933511984 0.9808846548665533 0.8317979179715447 0.5585859615332779 0.06652927021306577 0.18831568642200752 5.7973241002883755 0.02498900093229578 0.021211131800340313 278.5332663947346 -2.444877072216657 -0.14908673689500862 RPDHPDFDASTLYVPEDFLNSCTPGMR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPDHPDFDASTLYVPEDFLNSCTPGMR 27 1 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;P52701-4 P52701 MSH6 DNA mismatch repair protein Msh6 0 ; 165.87 6.0363e-12 303440000.0 94783.0 108542.0 109414.0 107519.0 101686.0 112245.0 118428.0 101117.0 122867.0 121757.0 False True 94272.69885938117 112154.75485497552 124818.54015646341 121130.8943758286 114635.10935985798 104485.76734630924 112699.18520110627 108662.86400172215 92588.07418344985 113986.36401858789 0.8270524257095174 0.9839313309150409 1.095030455889523 1.062678816179062 1.005691429381538 0.9166514630580779 0.9887076070145397 0.9532970451097323 0.8122732484769091 1.0 16.798501722165334 2.749926034866761 22.665951192620486 0.9377273405571864 1.0035996805204523 0.11675048645837494 0.08143236159632448 458.9685113355281 915314.138461071 0.025780365698097947 0.027067914694419458 562.2455604246217 -2.749926034866761 0.06587233996326591 RPDHSGGS(ph)PS(ph)PPTSEPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 2 RPDHS(0.133)GGS(0.872)PS(0.953)PPT(0.02)S(0.022)EPAR;RPDHS(0.154)GGS(0.846)PS(0.968)PPT(0.015)S(0.016)EPAR 94.542 0.006804899999999999 2079960000.0 362510.0 422320.0 403100.0 437490.0 404350.0 421580.0 425360.0 364420.0 443810.0 377950.0 True False 360558.2864386469 436376.66590216855 459852.97619199014 492876.1891431399 455841.57572978147 392437.1668925742 404783.7117670025 391614.8708872645 334438.9722493177 353828.9074207258 1.01901873723935 1.2332985144802995 1.2996478426371048 1.3929788629651951 1.288310723543444 1.1091156167914247 1.144009726954525 1.1067916235052233 0.9451996861625774 1.0 18.432692393829996 1.8137277784476409 1.0567112088390949 0.9800239826944191 1.2474579312041814 0.4987321478035469 0.09823856204582035 0.43843431772761515 0.905160286609019 0.0874005239788083 0.03641481846044488 65.12200727083054 -1.8137277784476409 0.2674339485097622 RPDHSGGS(ph)PSPPTSEPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 RPDHS(0.099)GGS(0.9)PS(0.001)PPTSEPAR;RPDHS(0.071)GGS(0.928)PS(0.001)PPTSEPAR;RPDHS(0.176)GGS(0.816)PS(0.007)PPTSEPAR 103.02 0.00033541 1040460000.0 211995.6 266927.0 257268.0 263626.3 243248.0 245261.0 244150.0 209105.5 271245.0 257966.5 True False 210854.2392445254 275811.50383422093 293489.0981864568 297001.3625497864 274224.19095614686 228306.68435229294 232339.5317564268 224710.01422621403 204400.30424678628 241502.85711376782 0.8730921106461097 1.1420631090268671 1.2152613914964954 1.2298047571746706 1.135490462653055 0.9453581091371586 0.9620570726704721 0.9304652413298656 0.8463680582896659 1.0 17.88168073148743 2.7262858989604846 6.255229758844694 0.9338702892265816 1.132255533607535 0.4598372111208109 0.0982807376463237 0.14157705808821794 25.52637353714429 0.03229383702772339 0.03168070144707025 532.4586650153235 -2.7262858989604846 0.1983852443809535 RPDLLTMVVDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPDLLTMVVDYR 12 1 Q15121-2;Q15121;B1AKZ5 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 ; 164.33 9.2316e-05 371770000.0 661410.0 823720.0 932640.0 769700.0 519380.0 634630.0 766830.0 540020.0 1171210.0 663210.0 False True 657849.0420495588 851137.022250745 1063947.605347798 867143.9410808802 585519.9643935552 590759.5218583295 729735.5033249266 580319.0345659975 882580.988909945 620883.3699973527 1.059537223637289 1.3708484771534049 1.7136029997909823 1.3966293558234255 0.9430434002380378 0.9514822757466485 1.1753181653553355 0.9346667387281961 1.4214923954457148 1.0 19.243962764897038 3.252332053758098 24.47339156303147 1.0604152575437018 1.4075934344960361 0.3664063364108989 0.2012312181984543 182.71753466430917 324707.1304372864 0.05587659543520222 0.07524118878026492 1787.8540134654384 -3.252332053758098 0.3471781769523343 RPDPDS(ph)DEDEDYER ddPTM_BT-474_Trastuzumab_2h_R1 7 RPDPDSDEDEDYER 14 1 H0Y6J6;Q5W012;Q96I25;Q5W010;Q5W011 H0Y6J6 RBM17 Splicing factor 45 1 RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER 209.23 3.7243e-08 5837294000.0 1968719.0 2422512.0 2048692.0 2422422.0 2223672.0 2118558.0 2086424.0 1787291.0 2091161.0 2123452.0 True False 1958119.6356492436 2503143.8474805686 2337130.026049915 2729100.3768234765 2506843.4484634497 1972107.0720091027 1985495.7002063151 1920667.730099803 1575822.391671784 1987931.47538128 0.9850035878493656 1.259170086333319 1.1756592493217903 1.372834230264422 1.2610311167705837 0.9920397641628255 0.9987747187440162 0.9661639517687218 0.7926945225159461 1.0 20.922836596932896 2.6516976172392814 4.387921082348605 0.9481374603279602 1.2203168601390075 0.5992308488445091 0.10688043230718981 0.15926748448315506 5.498584226507572 0.035692685612748874 0.03369986313713388 448.4330543000891 -2.6516976172392814 0.27217939981104733 RPDPDS(ph)DEDEDYERER ddPTM_BT-474_Trastuzumab_2h_R1 4 RPDPDSDEDEDYERER 16 2 H0Y6J6;Q5W012;Q96I25;Q5W010;Q5W011 H0Y6J6 RBM17 Splicing factor 45 1 RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER 222.51 7.544e-15 4469290000.0 829640.0 1217810.0 951580.0 1344290.0 1340500.0 1189900.0 1332730.0 1159560.0 1544390.0 1341110.0 True False 825173.3104216696 1258344.0696683105 1085554.1927183669 1514476.9761668425 1511204.729234011 1107645.0137233115 1268260.7583769925 1246092.2553263728 1163795.7782657533 1255519.2116179627 0.6572367055684358 1.0022499520709902 0.864625712353246 1.206255517360954 1.2036492275467066 0.8822206808734622 1.0101484283483086 0.9924915873812543 0.9269438233175203 1.0 20.259852673834747 5.169860285362071 1.536250903706628 1.0202408880452885 4.762806415893613e-13 0.4764697344840956 0.11038410968033291 3.303959523193878 2.979774912714937 0.029941272132224698 7.056801006237496 147863.26283682685 -5.169860285362071 -1.0202408880448122 RPDQQLQGEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 RPDQQLQGEGK 11 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;;;; 196.15 9.8547e-08 8830190000.0 4031970.0 3977160.0 3970120.0 3601610.0 3479320.0 4381240.0 4433980.0 3870040.0 5356330.0 4263490.0 False True 4010262.321513976 4109537.366356008 4529078.387098342 4057573.456718612 3922390.7784546665 4078375.191129611 4219491.447951518 4158842.0364649347 4036334.242644799 3991390.418042567 1.004728152722445 1.0296004489511656 1.1347119456481194 1.0165814495061352 0.982712881386898 1.0217931006432848 1.0571482631410472 1.0419532044937083 1.0112601925381866 1.0 21.92845997235918 RPDS(ph)PTRPTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPDSPTRPTLR 11 2 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 RPDS(0.971)PT(0.029)RPT(0.001)LR;RPDS(0.945)PT(0.05)RPT(0.005)LR;RPDS(0.99)PT(0.007)RPT(0.003)LR;RPDS(0.932)PT(0.065)RPT(0.004)LR 121.82 0.00031783 3649460000.0 1588710.0 1969760.0 1718310.0 1788860.0 1681870.0 1744450.0 1765040.0 1592110.0 1889040.0 1809500.0 True False 1580156.5618822745 2035322.2708549348 1960233.112181737 2015329.4925840537 1896046.1752755006 1623860.2774936 1679658.2720924192 1710921.332770768 1423511.4038391446 1694016.16080911 0.9327871825777312 1.201477481704075 1.157151364627758 1.1896754819750217 1.1192609723214775 0.9585860601931911 0.9915243496202345 1.009979345151928 0.8403174873840846 1.0 20.69201620728115 2.7575297937783088 6.502865314197837 0.9672198505125613 1.1310696399436904 0.4809625719448253 0.08256267069797259 0.14619507663436587 27.29929021460336 0.025124750920185877 0.02587394457340054 572.1762061441549 -2.7575297937783088 0.16384978943112904 RPDTTAPLTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPDTTAPLTDR 11 1 Q96JB2;Q96JB2-2;A0A087WYY9 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 0 ;; 117.21 0.0014195 885830000.0 346213.0 395282.0 378914.0 372508.0 375596.0 360162.0 381686.0 375411.0 492730.0 404533.0 False True 344349.0276758808 408438.722416985 432261.79762047064 419667.4746058939 423425.92426809226 335264.84867015394 363222.3899978849 403426.0751184315 371303.29374373355 378715.3576018738 0.9092555154255964 1.0784847094750196 1.1413896715403016 1.1081342918421364 1.1180584989986613 0.885268690430565 0.9590907332037062 1.0652487865108837 0.980428404316436 1.0 18.530754400773528 2.7675219907211726 24.966289766201477 0.9873259610406626 1.0774431519720147 0.2859737654784513 0.07243064072470828 1004.9151734881472 866289.8612134911 0.023219726635448263 0.024624769535942823 585.493382324117 -2.7675219907211726 0.09011719093135206 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6;Q96SU4-5;Q96SU4-4;Q96SU4-3 Q96SU4-7 OSBPL9 Oxysterol-binding protein-related protein 9 0 110.92 1.8137e-06 197350000.0 45341.0 49312.0 48263.0 45009.0 45401.0 59173.0 59437.0 55131.0 65423.0 61144.0 False True 45096.88909385867 50953.32011026654 55058.01089048381 50707.13478512328 51182.54823719011 55082.509788259165 56561.80523861048 59245.15516954551 49300.37827328609 57241.73757198795 0.7878322882345113 0.8901427921573307 0.9618507967414887 0.8858419911057615 0.894147354853131 0.9622787868552504 0.988121738398972 1.034999245000871 0.8612662781468732 1.0 15.804779845262582 2.6916191867851205 3.1629982579690323 0.9806654059137023 0.8876276796878383 0.3503417738215796 0.05756481540634696 0.28889410323124887 5.8276294412855965 0.019741603681514557 0.01911747567937466 491.608277540178 -2.6916191867851205 -0.09303772622586404 RPDVSVQGDEVTLYTPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RPDVSVQGDEVTLYTPEER 19 1 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2;D6RA17 D6RIY6 EXOSC9 Exosome complex component RRP45 0 ; 158.02 3.2987999999999995e-10 503710000.0 201847.0 235887.0 224032.0 235181.0 226658.0 238790.0 237996.0 207113.0 275450.0 255800.0 False True 200760.27817930985 243738.35619829717 255573.75827894796 264954.8904863489 255521.55279278095 222283.00935119728 226483.2242469901 222568.82375850427 207569.03834089937 239474.62499860203 0.8383363297070904 1.0178045218766707 1.0672268858566536 1.1064006906280597 1.0670088857818343 0.9282111177854225 0.9457504077866798 0.9294046238084872 0.8667684032999784 1.0 17.869513268902885 2.7233277361284527 23.684512561924162 0.9306966975954633 1.026764666931937 0.24760656751508459 0.07369426450358874 546.9497019593764 850410.7325848745 0.024555385716604084 0.02325207757102178 528.844188378988 -2.7233277361284527 0.09606796933647377 RPDYAPMES(ph)S(ph)DEEDEEFQFIK ddPTM_BT-474_Trastuzumab_2h_R1 7 RPDYAPMESSDEEDEEFQFIK 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 RPDY(0.003)APMES(0.999)S(0.999)DEEDEEFQFIK;RPDY(0.169)APMES(0.916)S(0.916)DEEDEEFQFIK;RPDY(0.001)APMES(1)S(1)DEEDEEFQFIK;RPDYAPMES(1)S(1)DEEDEEFQFIK;RPDY(0.003)APMES(0.998)S(0.998)DEEDEEFQFIK;RPDYAPMES(1)S(1)DEEDEEFQFIK;RPDY(0.005)APMES(0.997)S(0.997)DEEDEEFQFIK 228.41 5.8868e-25 662559000.0 903442.0 921084.0 730876.0 749032.0 765261.0 953382.0 904804.0 837206.0 1115194.0 943921.0 True False 898577.9686538428 951741.7241329635 833776.987911925 843859.3744000193 862712.4522926876 887476.9463598282 861035.1738330629 899682.5629659271 840369.3815340016 883679.1536485753 1.0168599824311262 1.0770218129548133 0.9435290902465991 0.9549386459054213 0.9762734005104461 1.004297705446114 0.9743753377885865 1.0181099771916946 0.95098925675031 1.0 19.753163125205315 4.242077416251232 24.999930979471127 0.9803295979465715 1.0469408984190065 0.5164823723696882 0.026665003173922164 69.64968254744251 495099.15382083436 0.0065732725324704365 0.016605478408970382 17461.333865625184 -4.242077416251232 0.06661130047243502 RPDYAPMES(ph)SDEEDEEFQFIK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPDYAPMESSDEEDEEFQFIK 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 RPDYAPMES(0.63)S(0.37)DEEDEEFQFIK;RPDYAPMES(0.5)S(0.5)DEEDEEFQFIK;RPDYAPMES(0.5)S(0.5)DEEDEEFQFIK 250.95 2.0789999999999996e-31 310382000.0 221252.0 192941.0 194366.0 197289.0 221191.0 208371.0 226227.0 213261.0 213073.0 242936.0 True False 220060.8038154081 199362.92454970255 221731.04334044238 222265.76717150322 249358.36274822816 193966.8032225736 215283.5357389357 229175.61873741556 160564.01418192202 227431.61649202643 0.9675910817048747 0.8765840371041467 0.9749350013884991 0.9772861425328508 1.0964102818878327 0.8528576906517037 0.9465857872336908 1.007668248910548 0.7059880972509873 1.0 17.795073299404258 RPDYAPMESS(ph)DEEDEEFQFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPDYAPMESSDEEDEEFQFIK 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 RPDYAPMES(0.452)S(0.548)DEEDEEFQFIK 273.02 6.4832e-45 165480000.0 179180.0 149040.0 142720.0 157690.0 169490.0 167950.0 194180.0 157340.0 137180.0 175850.0 True False 178215.31478876952 154000.70630341728 162813.73545552185 177653.53783168015 191073.54685406396 156340.01181177454 184786.77156036432 169081.50975633136 103373.82711782368 164627.1024472408 1.0825393397535101 0.9354517209751109 0.9889850032906939 1.0791269189021537 1.16064453552111 0.9496614438796791 1.1224565628225416 1.0270575576127758 0.6279271491822108 1.0 17.328842339646556 1.3663595768219507 10.238527777541746 0.8148423442068033 1.0440347661447276 0.4222892527239013 0.10743672329400561 0.26702012440329387 23.06680026526151 0.06615754022933926 0.02420851129125007 23.246607171095047 -1.3663595768219507 0.22919242193792422 RPEDPNADPSSEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPEDPNADPSSEAK 14 1 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C190;Q9BV36-3;Q9BV36 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 138.19 2.7069e-05 229520000.0 276670.0 241620.0 211800.0 222190.0 211930.0 259470.0 258070.0 252910.0 350380.0 268780.0 False True 275180.43946092646 249662.17563762545 241619.599001398 250319.2312183458 238918.02929247575 241533.4496266812 245586.16817686302 271783.428450958 264033.54385145864 251626.23028586476 1.0936079245327583 0.9921945552098921 0.9602321615155203 0.9948057916456718 0.9494957223698356 0.9598897911091484 0.9759958963652565 1.0801076983993014 1.049308506317081 1.0 17.94092279542536 1.7501587338283477 24.99999999999964 1.049643361254535 0.9859723937883625 0.24629505334504886 0.04227025437585538 3.8265875034135797 8262.663237021292 0.019591215525392284 0.010864357811958195 56.254689746849046 -1.7501587338283477 -0.06367096746617251 RPEDYDIHNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPEDYDIHNSR 11 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 75.045 0.025423 128020000.0 84726.0 180860.0 189200.0 213540.0 216810.0 180800.0 177200.0 162560.0 114480.0 177280.0 False True 84269.84462994344 186879.8157678213 215837.71544411927 240574.1421052504 244419.4683664496 168301.7215574206 168628.15903026337 174691.05266295423 86267.93795340761 165965.83862295598 0.5077541578986572 1.1260137466745674 1.3004948321591834 1.4495401228429352 1.4727095069348934 1.014074480349967 1.016041375920473 1.0525723493002697 0.5197933422274483 1.0 17.340526791183073 1.4507608011857327 3.8408001674747565 0.7583112303735677 1.1497915126270362 0.19979797768526164 0.28100142730066735 0.3199071880376091 8.86155287282799 0.20525155578424534 0.07467021473904706 28.233245282751835 -1.4507608011857327 0.3914802822534684 RPEDYEAVFVGNIDDHFR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPEDYEAVFVGNIDDHFR 18 1 Q68CQ4;H7C2R4 Q68CQ4 DIEXF Digestive organ expansion factor homolog 0 ; 184.32 3.8156e-14 321590000.0 148902.0 198146.0 170969.0 176956.0 172840.0 178455.0 165521.0 157043.0 203670.0 176334.0 False True 148100.3281765673 204741.1698282135 195039.94911081187 199358.61145629248 194850.14949705827 166118.82588788445 157514.11687837602 168762.3461081958 153478.25753817728 165080.21315286754 0.8971416098150023 1.2402526379016674 1.1814859296928641 1.207646922963944 1.1803361879392729 1.0062915640535013 0.9541671522589739 1.0223051138898067 0.9297192837766292 1.0 17.332807680714765 2.674265594405375 5.281560363235409 0.9827935574229565 1.152703106530011 0.4294295117279836 0.09130027631639136 0.19759190753886036 11.077055596472935 0.028937772976281462 0.027418389526508866 472.35182146519105 -2.674265594405375 0.16990954910705458 RPEEWGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPEEWGK 7 1 K7ENE3;Q9BRG1 K7ENE3 VPS25 Vacuolar protein-sorting-associated protein 25 0 ; 107.01 0.012145 502950000.0 1251290.0 1206820.0 1273090.0 1188840.0 1154250.0 1318270.0 1351210.0 1248970.0 1586980.0 1302090.0 False True 1244553.1936713874 1246988.2741619044 1452330.0061033487 1339347.0221054878 1301236.8957242495 1227141.09777379 1285846.8101765383 1342174.4835411538 1195890.043442512 1218989.501424666 1.0209712160907412 1.0229688382914828 1.1914212586785786 1.0987354858595226 1.0674717823274595 1.006687175188627 1.0548465008712005 1.1010549984003293 0.9810503224554787 1.0 20.217254270091328 2.993357330755542 19.2892649138145 1.041999138890168 1.0864306318060237 0.16600274554015237 0.05464892079700376 34.495897282676424 100181.76211278909 0.01697062345465374 0.019473665139446962 984.8210679847016 -2.993357330755542 0.0444314929158558 RPEGPGAQAPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 RPEGPGAQAPS(0.012)S(0.988)PR;RPEGPGAQAPS(0.031)S(0.969)PR;RPEGPGAQAPS(0.012)S(0.988)PR;RPEGPGAQAPS(0.014)S(0.986)PR;RPEGPGAQAPS(0.004)S(0.996)PR;RPEGPGAQAPS(0.128)S(0.872)PR 163.56 2.6097e-06 59104800000.0 7742680.0 9337750.0 8880580.0 8999100.0 8673370.0 8097170.0 8208820.0 6830910.0 7794310.0 7597980.0 True False 7700994.271172618 9648551.36396093 10130888.472614886 10138385.137301477 9777872.258408349 7537431.696587943 7811728.015862356 7340667.190858151 5873506.738903086 7113070.411442045 1.082654019392925 1.3564537964421557 1.4242637688948496 1.4253176969811696 1.3746345379457678 1.0596593679802848 1.0982216629398824 1.031996981085692 0.825734373366387 1.0 22.762041014003376 2.6564293893023025 3.7427853082212112 1.0071028908927937 1.3449279766977116 0.684378293272881 0.11205852746601484 0.14664033797949796 3.911059181137916 0.039013396183116736 0.03697990886169599 453.34558362485086 -2.6564293893023025 0.3378250858049179 RPEILK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPEILK 6 1 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 110.9 0.045388 2443480000.0 3247000.0 3310600.0 3035200.0 3096800.0 3165900.0 3597800.0 3653000.0 3285300.0 4362200.0 3620100.0 False True 3229518.512775611 3420791.319700036 3462529.7775686653 3488854.56247794 3569058.5992405494 3349092.5543102236 3476290.434184833 3530465.7684153705 3287194.2604852803 3389062.1186764566 0.9529239652995346 1.0093622364868222 1.0216778732049032 1.0294454454675077 1.053111000701984 0.9882063051762998 1.0257381872783264 1.0417235343547309 0.9699421684749292 1.0 21.692454649782892 4.741636472707787 2.9715573872016834 1.020031777824941 0.9414689481320071 0.38025363065992535 0.0236939701107561 0.37295811958028435 4.778313511117375 0.005592861919025532 0.07003381209532386 55161.55148212823 -4.741636472707787 -0.07856282969293393 RPEIPTEQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPEIPTEQSR 10 1 Q8N766-4;Q8N766-3;Q8N766-2;Q8N766;H7C4E3 Q8N766-4 EMC1 ER membrane protein complex subunit 1 0 128.28 0.0058175 0.0 48591.0 58196.0 69148.0 53060.0 82760.0 80395.0 72923.0 54996.0 65395.0 71262.0 False True 48329.39145496765 60133.0186797751 78883.43735480963 59777.39055963562 93298.99544304861 74837.48287947365 69395.43589708753 59100.080784029415 49279.27849810528 66713.99814953227 0.7244265490825853 0.9013553429220864 1.182412080565174 0.8960247057244419 1.3984920411145036 1.1217658205963532 1.0401930302774705 0.8858722670400134 0.7386647460050447 1.0 16.02570188371893 -3.3410585257363556 1.9577170462885292 1.674395032539469 0.998406773640744 0.0 0.19646523578065458 19132508.726731956 13722873.827214457 40118548.591836564 0.04929964353439651 0.0004559754643346339 3.3410585257363556 -0.6759882588987249 RPEIVVATPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPEIVVATPGR 11 1 G3V529;Q9GZR7;Q9GZR7-2;A0A1W2PRR2;F5GYL3;A0A087WXU8 G3V529 DDX24 ATP-dependent RNA helicase DDX24 0 165.58 0.0015265 0.0 37299.0 57287.0 58133.0 55092.0 43520.0 48110.0 48928.0 47136.0 56795.0 54921.0 False True 37098.1863283085 59193.763164277196 66317.62109890576 62066.64155129 49062.014036750625 44784.26893875838 46561.16571688904 50653.52767175813 42798.63326400934 51415.894759766285 0.7215314739079167 1.151273617640069 1.289827229668291 1.2071489145776393 0.954218812411729 0.8710199277481552 0.9055792169802684 0.9851725406789046 0.832400825930971 1.0 15.649926804070253 3.1091148238545268 6.712638819608878 0.921613852784856 1.1099918329673897 0.23757480967439348 0.14679270732808017 0.29980088197102894 16.732469631685916 0.04346909801455167 0.05215526507286205 1285.6265239898032 -3.1091148238545268 0.1883779801825337 RPELEDSTLR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPELEDSTLR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;;; 174.42 4.9889e-06 5502210000.0 2079280.0 2777070.0 2599820.0 2613090.0 2503920.0 2647600.0 2479740.0 2241790.0 2664090.0 2600330.0 False True 2068085.387509726 2869503.096175738 2965852.0579594616 2943906.926073849 2822779.3701034132 2464577.6437800145 2359785.5026732804 2409083.7533789626 2007560.71647706 2434374.713145482 0.8495345339984782 1.1787433876471802 1.218321913197682 1.20930722381272 1.1595500704392667 1.0124068535839772 0.9693600126268876 0.9896109010539957 0.8246720217870933 1.0 21.215119822498536 2.5433868343121038 2.912478388771731 0.9511041267022081 1.1360739061355276 0.371309671058328 0.10828993990970019 0.2861938389810383 4.793835261611485 0.03926052541258231 0.0350614994097808 349.45143990513196 -2.5433868343121038 0.1849697794333195 RPELLTHSTTEVTQPR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPELLTHSTTEVTQPR 16 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 ;;;; 203.99 1.711e-11 4076070000.0 2582750.0 3161010.0 3074510.0 3392340.0 3100400.0 3428330.0 3300740.0 2952230.0 3859400.0 3363800.0 False True 2568844.7609705036 3266222.3069790998 3507374.2838800205 3821809.896175539 3495217.5624894663 3191337.6165207536 3141070.5961487126 3172540.3937201854 2908302.583310459 3149119.4041059264 0.8157343153203903 1.037185920203753 1.1137635109380069 1.2136122533786864 1.1099031551272034 1.0134063549193408 0.99744410836035 1.007437313930911 0.9235288377819264 1.0 21.586517030019348 2.527341356473956 4.824887103358362 0.987580634058082 1.0685763116434703 0.11435785308116264 0.09720733611527722 0.47158541322011077 24.12736908059639 0.03470998454986334 0.0317498670302254 336.7761722281357 -2.527341356473956 0.08099567758538828 RPENPKPQDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPENPKPQDGK 11 2 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ;;; 126.83 0.00016832 1925270000.0 2288200.0 1804640.0 1504110.0 1522500.0 1603290.0 2100740.0 2028010.0 2049360.0 2822330.0 2073690.0 False True 2275880.5854429193 1864706.3514720814 1715875.6140415135 1715248.3438945597 1807459.4780556478 1955520.7884100422 1929907.4085494638 2202293.6496392186 2126804.5887844246 1941345.328824671 1.1723213545015108 0.9605227487275598 0.8838590376295076 0.8835359265695429 0.9310345002606618 1.007301874311024 0.9941082505490499 1.1344162303017624 1.0955313087301342 1.0 20.888625338519297 1.9162892776299478 4.420353999602784 1.088561799745473 0.9647273590669908 0.2291256465503887 0.0832715018218721 0.2888926078793154 9.714897724610486 0.0400331092758327 0.023346791996061128 82.46872450325996 -1.9162892776299478 -0.12383444067848226 RPENSLLEETLHFDHAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPENSLLEETLHFDHAVR 18 1 O00566;U3KQ48 O00566 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 0 ; 219.79 2.9018e-19 438520000.0 157327.0 196579.0 167944.0 181765.0 167645.0 194589.0 181384.0 43720.0 200348.0 142448.0 False True 156479.9689126731 203122.01318048534 191589.05540458357 204776.4303632148 188993.59704023568 181137.5204432355 172609.7629658315 46982.60840566164 150974.91992565812 133356.8466841315 1.173392838864216 1.523146491770305 1.4366645595511165 1.5355524328514414 1.4172020540339045 1.3582918683753606 1.2943449643397333 0.35230743358040295 1.1321122512986281 1.0 17.024932370744274 1.916914842300226 7.803057693025244 0.768222841778844 1.412627790054845 0.59803178467231 0.2115245642126657 0.16969421262039652 14.311435607843048 0.08519742747588768 0.0533028821724353 82.58759935806891 -1.916914842300226 0.6444049482760009 RPEPSTLENITDDKYATVSS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPEPSTLENITDDKYATVSSPSK 23 2 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 RPEPSTLENITDDKYATVS(0.025)S(0.971)PS(0.004)K;RPEPSTLENITDDKYAT(0.009)VS(0.179)S(0.812)PSK 263.59 3.5587e-44 1781150000.0 997640.0 683470.0 613510.0 581440.0 571960.0 933300.0 826290.0 914600.0 1423030.0 989940.0 True False 992268.8170882232 706218.8857836595 699886.8752754845 655050.2443836136 644795.7157274783 868783.1677518849 786319.1959656683 982852.0962446972 1072343.3241250676 926761.1816697267 1.0706844834615026 0.7620289884296614 0.755196580433497 0.7068166614439148 0.6957517518868916 0.9374401786948132 0.8484593566478184 1.0605235908499238 1.157087009398741 1.0 19.821838091162814 1.8508427544339368 1.7563913078367537 1.0941849792439067 0.8005381541705511 0.4969991873481173 0.11305208383857858 0.2739511161476799 1.6001401550472483 0.077228911209557 0.03404720132707844 70.93208967267334 -1.8508427544339368 -0.2936468250733556 RPERPEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPERPEVK 8 2 A0A1B0GUN5;A0A5F9ZH45;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 0 ; 68.893 0.031119 124933000.0 114573.0 121747.0 128912.0 124949.0 125101.0 124186.0 128779.0 112843.0 148753.0 120856.0 False True 113956.15169825703 125799.2752973842 147061.68907680918 140767.53058869054 141031.8708182799 115601.3141223997 122549.46778644658 121263.91766514345 112094.81633807886 113142.86660997276 1.007188125178831 1.1118621886348412 1.299787547223474 1.24415736322066 1.246493703438206 1.0217287009432219 1.0831391448556837 1.0717769603908451 0.9907369301901573 1.0 16.787786103400155 2.7297290485734287 24.831115158494264 1.0447942351901611 1.1880152161223356 0.45405869495256723 0.08075988454414626 604.9966111163325 1701024.832921381 0.02789335141513377 0.026659261027984143 536.6968527871245 -2.7297290485734287 0.1432209809321745 RPES(ph)PPSILTPPVVPTADK ddPTM_BT-474_Trastuzumab_2h_R1 6 RPESPPSILTPPVVPTADK 19 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 RPES(0.959)PPS(0.041)ILTPPVVPTADK;RPES(0.979)PPS(0.021)ILTPPVVPTADK;RPES(0.993)PPS(0.007)ILTPPVVPTADK;RPES(0.996)PPS(0.004)ILTPPVVPTADK;RPES(0.988)PPS(0.012)ILTPPVVPTADK;RPES(0.991)PPS(0.009)ILTPPVVPTADK 218.29 2.0820999999999998e-19 9622130000.0 4955100.0 4425670.0 4265270.0 3894700.0 3979730.0 4954000.0 4649560.0 4698650.0 5655500.0 4781170.0 True False 4928422.2921633655 4572975.750575991 4865782.941608552 4387768.620667413 4486525.02579222 4611541.640461623 4424643.019755944 5049287.122261258 4261777.804817412 4476031.637234422 1.1010695838621147 1.0216584960068484 1.0870751898024882 0.9802809667758416 1.0023443508465193 1.0302745856619833 0.9885191567791889 1.1280722594224175 0.9521330835477763 1.0 22.093788802850256 7.863645520367774 1.0543075824592276 1.0259472109870058 76.79029830946769 0.18358833017936627 0.04941518593803843 2967.0313123656965 4.240891271872572 0.014032373874964317 543210.0335575738 73054255.6975292 -7.863645520367774 75.76435109848069 RPES(ph)PSEIS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 RPES(0.988)PS(0.012)EIS(1)PIK;RPES(0.997)PS(0.003)EIS(1)PIK;RPES(0.998)PS(0.002)EIS(1)PIK;RPES(0.994)PS(0.006)EIS(1)PIK 143.46 0.00021776 1163150000.0 2409130.0 1755230.0 1501510.0 1407790.0 1520650.0 2104210.0 1934770.0 1872600.0 2536260.0 2128730.0 True False 2396159.5117595056 1813651.769491059 1712909.5566411186 1586016.069656039 1714295.7639013054 1958750.9154775434 1841177.783560851 2012342.920870129 1911232.707142816 1992872.6289025573 1.2023646052477683 0.9100690847913384 0.859517829588733 0.7958441732071118 0.860213412056013 0.98287812631367 0.9238813142688189 1.0097699630599541 0.9590340493538219 1.0 20.92641807502408 1.7516411727120695 23.195770459655463 0.9883064006019261 0.923570310082849 0.05211378765617847 0.10359108801752794 6.893553867393665 12255.608585294825 0.04929083568367204 0.02732911443658387 56.44703995057679 -1.7516411727120695 -0.06473609051907714 RPES(ph)PSEISPIK ddPTM_BT-474_Trastuzumab_2h_R1 8 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 RPES(0.999)PS(0.001)EISPIK;RPES(0.996)PS(0.004)EISPIK;RPES(0.996)PS(0.004)EISPIK;RPES(0.981)PS(0.019)EISPIK;RPES(0.993)PS(0.007)EISPIK;RPES(0.989)PS(0.011)EISPIK;RPES(0.99)PS(0.01)EISPIK;RPES(0.973)PS(0.027)EISPIK 222.75 2.5491e-11 15388830000.0 8880930.0 8951240.0 8430150.0 8308780.0 8231810.0 9244870.0 9580940.0 8713840.0 11272700.0 9267710.0 True False 8833116.059644077 9249176.612261163 9617041.843822647 9360670.696081582 9280082.209739527 8605793.896983152 9117473.329454917 9364110.988782944 8494694.131441109 8676236.813314285 1.0180814850614786 1.0660355187709563 1.1084346878435396 1.078886030602229 1.0695976158117997 0.9918809366495123 1.0508557483658727 1.0792825495972018 0.979075872895195 1.0 23.04863800047308 2.942626085535738 24.482217293839703 1.031962657287526 1.0710792326620626 0.2899887385635218 0.03508826766768828 347.3339810726687 148211.37046089987 0.011145351580163363 0.011821493822896354 876.2460748129282 -2.942626085535738 0.03911657537453661 RPES(ph)SPEDSATRPPPFDAHVGKPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPESSPEDSATRPPPFDAHVGKPTR 25 3 Q13796 Q13796 SHROOM2 Protein Shroom2 1 RPES(0.57)S(0.428)PEDS(0.001)AT(0.001)RPPPFDAHVGKPTR 69.521 0.028751 392000000.0 96037.0 88852.0 82010.0 102350.0 89486.0 101520.0 101670.0 112360.0 114390.0 100930.0 True False 95519.94746271383 91809.38510783183 93556.29515630151 115307.49950581812 100881.51167492337 94502.16135237468 96751.83368288323 120744.87375251911 86200.11724746942 94488.5609894796 1.010915463866034 0.9716455002214915 0.9901335587777457 1.22033289848341 1.067658461706868 1.0001439366072744 1.0239528750327314 1.2778782160304345 0.9122809824256607 1.0 16.5278520633524 3.9268284404965073 24.999982995123332 1.0898442348164805 0.9886776408988626 0.09757234554135175 0.10278589539228662 242.97303537322108 83014.12534708457 0.02653863936261008 0.047843242584449795 8449.450003015234 -3.9268284404965073 -0.10116659391761795 RPESFTT(ph)PEGPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPESFTTPEGPKPR 14 2 F8W8D3;Q14493;H7C4H8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 RPES(0.008)FT(0.115)T(0.876)PEGPKPR 105.9 0.046374 315610000.0 98120.0 71950.0 83971.0 81209.0 73036.0 144960.0 103360.0 105030.0 164910.0 124660.0 True False 97591.73282215686 74344.81225530658 95793.38691098387 91490.05107345374 82336.70168171219 134939.25639913545 98360.08192645614 112867.87193153355 124270.14018078668 116704.09207320448 0.8362323127533601 0.6370368933479438 0.82082286241425 0.783948955415078 0.7055168350914824 1.1562512847835078 0.8428160502269126 0.9671286578429092 1.0648310438235216 1.0 16.83249562254477 2.7582381895735946 24.99754351406375 0.9875070552443747 0.7551378927570143 0.646598533839849 0.09170140406547167 529.6873261605853 672891.1652041886 0.02694361987836346 0.028542759521692898 573.1102681420679 -2.7582381895735946 -0.2323691624873604 RPEVDGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPEVDGVR 8 1 O95865;A0A140T971;Q5SSV3;Q5SRR8;H0Y7N1 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 142.56 0.00098688 821720000.0 651980.0 765870.0 715890.0 750320.0 732330.0 747150.0 689600.0 579570.0 759640.0 699540.0 False True 648469.8121217885 791361.5199718082 816681.0893725717 845310.4350679562 825587.8846400168 695501.2791019189 656241.4134721768 622820.456396827 572436.9006544949 654894.7582936746 0.990189345554351 1.2083796823075774 1.247041725452851 1.2907576742107525 1.2606420713933983 1.062004650814498 1.0020562924980663 0.9510237309267568 0.8740899104857347 1.0 19.32090355835889 2.418099977488419 2.324337382801458 0.9480589349316871 1.206787856144201 0.649748432927321 0.08381957225334748 0.1853582971390012 2.045793304071003 0.03491810290106754 0.02789969525474118 261.8785800803233 -2.418099977488419 0.2587289212125138 RPEVDGVRK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPEVDGVRK 9 2 O95865;A0A140T971;Q5SSV3;Q5SRR8;H0Y7N1 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 0 ;; 74.84899999999998 0.022458 950490000.0 840900.0 906140.0 844140.0 877770.0 783140.0 911710.0 1086480.0 769500.0 1554850.0 1049170.0 False True 836372.6878327726 936300.3221268028 962987.5746035873 988895.5920002143 882868.2369655534 848685.6336344922 1033922.8116433454 826923.9974418264 1171678.0514225722 982211.0723603708 0.8515203212104593 0.9532577553587958 0.9804283434612612 1.0068055836753904 0.8988579561050104 0.8640562680636444 1.0526482960110652 0.8419005045978855 1.1928984353708105 1.0 19.9056735604086 1.239454288097434 24.99999952361729 1.096449204878552 0.9341766955534078 0.41330968223882014 0.07869562018583542 21.075956611346538 589743.0256578082 0.05629992120731166 0.017840058480646417 17.356185697776837 -1.239454288097434 -0.16227250932514414 RPFDPNDR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPFDPNDR 8 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ;;;;; 108.57 0.0060694 11784800000.0 910032.0 1752620.0 1051590.0 2054920.0 1147490.0 1133230.0 1026740.0 1029730.0 1042730.0 1243290.0 False True 905132.4888260592 1810954.897218837 1199644.7314158634 2315072.661304307 1293616.0497939084 1054892.4774364808 977072.6636723076 1106573.6814629904 785763.1633661486 1163942.1677658798 0.7776438674469618 1.5558804787482363 1.0306738295413016 1.9889928601418028 1.1114092139791878 0.9063100441332806 0.8394512122090589 0.950711910014391 0.6750878051564846 1.0 20.150587946857215 3.0018288103494504 24.999718580204576 0.8884178901233653 1.3591580761008153 0.33498443629772334 0.3075729077843334 64.95683055142005 887929.2570833373 0.08464743282161376 0.10051818209291202 1004.2198701313588 -3.0018288103494504 0.47074018597745004 RPFGISALIVGFDFDGTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPFGISALIVGFDFDGTPR 19 1 O14818;H0Y586;O14818-2 O14818 PSMA7 Proteasome subunit alpha type-7 0 155.93 3.3674e-08 1207400000.0 253820.0 362820.0 337420.0 321780.0 328350.0 338550.0 339370.0 301800.0 410780.0 380300.0 False True 252453.461322053 374896.2443706785 384925.8030927838 362517.31500715326 370163.4262170741 315146.83536097745 322953.3765807026 324321.84850934765 309548.7731699932 356028.92840878916 0.7090813166512926 1.0529937722932055 1.0811644009186117 1.018224324150745 1.0397004194896653 0.8851719908533071 0.9070986956708487 0.9109424056040869 0.8694483747527733 1.0 18.441634943651838 2.7278553403052643 24.275749736565068 0.9086660229684271 0.9919930676090515 0.08629654709029244 0.10252574026696089 1003.7083038638725 2276048.6515478883 0.03254277545777539 0.030981989401212134 534.3863303343451 -2.7278553403052643 0.08332704464062435 RPGAPSLS(ph)PAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPGAPSLSPAPR 12 1 Q5QP82-2;Q5QP82 Q5QP82-2 DCAF10 DDB1- and CUL4-associated factor 10 1 RPGAPS(0.063)LS(0.937)PAPR;RPGAPS(0.083)LS(0.917)PAPR 104.94 0.0012764 502680000.0 162710.0 203220.0 189803.0 173140.0 186479.0 205459.0 176687.0 142066.0 199662.0 186285.0 True False 161833.98743878046 209984.054850916 216525.6126027491 195059.50624755572 210225.99530237168 191256.10292846282 168139.97480011403 152667.68631653077 150457.97543372892 174396.13181338747 0.9279677579772863 1.2040637178559062 1.241573481884577 1.1184852795719065 1.20545102185709 1.096676290579176 0.9641267443938043 0.875407526125022 0.8627368845240583 1.0 17.412008515265338 2.2151709473319903 2.731243666289731 0.9019126579934674 1.1480118865473607 0.5766698806631962 0.08772399191661943 0.1741156767391828 2.66094883739145 0.03659652081131123 0.02575605346475298 164.1235670533949 -2.2151709473319903 0.24609922855389332 RPGFS(ph)PTSHR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPGFSPTSHR 10 1 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 RPGFS(0.99)PT(0.009)SHR;RPGFS(0.627)PT(0.343)S(0.029)HR;RPGFS(0.641)PT(0.231)S(0.128)HR;RPGFS(0.849)PT(0.117)S(0.034)HR;RPGFS(0.613)PT(0.159)S(0.228)HR;RPGFS(0.531)PT(0.389)S(0.08)HR 116.98 0.00062368 3239753000.0 1064956.0 1356226.0 1182798.0 1245043.0 1205659.0 1281106.0 1269453.0 1168964.0 1396628.0 1343807.0 True False 1059222.395223734 1401367.1625540706 1349325.6773354816 1402665.3161428666 1359192.5271492354 1192546.1576191436 1208044.7086086085 1256198.0295589166 1052447.743256393 1258044.0867689457 0.8419596788091516 1.1139253204974906 1.0725583399870953 1.1149572029270882 1.0804013479687113 0.9479366980548183 0.9602562591516555 0.9985325973632845 0.8365746115936293 1.0 20.262751050085456 2.7311304089749524 24.32549386552797 0.9537009036340209 1.0540470297936348 0.24021184854863087 0.0844168102004701 560.2661034451688 1834228.59563165 0.02642516184028259 0.025379137017460706 538.431437231226 -2.7311304089749524 0.10034612615961391 RPGGS(ph)SPLNAVPCEGPPGSEPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPGGSSPLNAVPCEGPPGSEPPR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 RPGGS(0.5)S(0.5)PLNAVPCEGPPGSEPPR;RPGGS(0.5)S(0.5)PLNAVPCEGPPGSEPPR 104.53 0.00099727 1260840000.0 1251870.0 1296170.0 1255190.0 1283380.0 1324260.0 1469590.0 1406390.0 1439530.0 1587340.0 1527120.0 True False 1245130.0710158332 1339312.23489869 1431909.8416929396 1445855.7764120859 1492896.6614960325 1368000.7023427554 1338357.5427684677 1546955.0383852252 1196161.3262662664 1429657.8941667897 0.8709286858738328 0.9368060991117364 1.0015751653142604 1.0113299008884473 1.0442334964100615 0.956872765103033 0.9361383224820143 1.0820456031453571 0.836676614137394 1.0 20.447238532106752 4.543777139837652 2.657364499161558 0.9908630087728226 0.8677733739717011 0.2278946525240758 0.06313550994894274 0.43575926461818604 5.147657684740698 0.015082088020185354 0.09639301072677933 34976.56371626849 -4.543777139837652 -0.12308963480112156 RPGHGS(ph)LTNISR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPGHGSLTNISR 12 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 RPGHGS(0.987)LT(0.013)NISR;RPGHGS(0.991)LT(0.009)NISR 157.07 4.4074e-05 667900000.0 371630.0 356150.0 339890.0 321770.0 344580.0 382860.0 321650.0 283540.0 410250.0 344420.0 True False 369629.18537197495 368004.23745277873 387743.557623159 362506.04900817893 388460.2205143272 356393.78935549856 306090.5606776763 304699.1945869467 309149.3845683571 322438.82072720316 1.146354475985064 1.1413149217665879 1.2025337294953278 1.1242630406308127 1.204756361650947 1.1053067014440632 0.9492981024658994 0.9449829704120369 0.9587846273321738 1.0 18.298665925185365 2.340936098079662 3.733878354222601 0.9561230537647792 1.1621199412485117 0.9176265129929891 0.028368265208003857 0.05319351922203033 1.4195571151110011 0.009795903035156872 0.007920471029909512 219.24823106252637 -2.340936098079662 0.20599688748373246 RPGQSFHVNSEVNSVLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPGQSFHVNSEVNSVLSPR 19 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 RPGQSFHVNSEVNS(0.002)VLS(0.998)PR;RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNS(0.001)VLS(0.999)PR;RPGQSFHVNSEVNSVLS(1)PR 229.25 3.9868e-20 5303260000.0 748950.0 1322940.0 1351610.0 1519570.0 1601370.0 1508010.0 1383300.0 1286570.0 1239410.0 1419230.0 True False 744917.7364161671 1366973.258165883 1541904.9395952753 1711947.4061949796 1805294.9774363814 1403764.8181737044 1316384.4942808335 1382580.3864700855 933974.0127431259 1328653.5263360676 0.5606561241517743 1.0288410267012853 1.1605018983747222 1.2884829432665519 1.3587402145499239 1.0565318876206695 0.990765815306969 1.0405876017073676 0.7029477544222374 1.0 20.341533510653896 1.397727162353489 5.717856566634117 0.8507103572173726 1.0793558228473898 0.13033403597413507 0.21289415070297815 0.3982872410789911 19.51965102743517 0.15115658588866948 0.0551718380952003 24.98775058294028 -1.397727162353489 0.2286454656300172 RPGRS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 8 RPGRSPK 7 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 RPGRS(1)PK;RPGRS(1)PK;RPGRS(1)PK;RPGRS(1)PK;RPGRS(1)PK;RPGRS(1)PK;RPGRS(1)PK;RPGRS(1)PK 108.98 0.0056165 13042640000.0 7538040.0 6368980.0 5107710.0 5546970.0 5643060.0 4937530.0 7158920.0 6894720.0 10248790.0 7119130.0 True False 7497456.030194976 6580967.649170281 5826831.170988814 6249215.833256358 6361670.241962911 4596210.172795416 6812615.689869834 7409239.01707876 7723113.031250046 6664781.028406171 1.1249365880499052 0.9874244361699708 0.8742719597469287 0.9376475846125147 0.9545205183559126 0.6896265838601096 1.0221814731547176 1.1117002922526054 1.1587947148350597 1.0 22.66812604562536 2.0055501584081012 24.99624563820133 1.0936673630662532 0.9237898179439643 0.31653078053192396 0.10782883346780985 165.28938730135485 744409.4173616591 0.04119407513210739 0.030332522972473814 101.28617215140609 -2.0055501584081012 -0.16987754512228892 RPGS(ph)VSSTDQER ddPTM_BT-474_Trastuzumab_2h_R1 2 RPGSVSSTDQER 12 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 RPGS(0.961)VS(0.009)S(0.009)T(0.02)DQER;RPGS(0.714)VS(0.07)S(0.07)T(0.146)DQER 128.73 0.00026145 1078430000.0 624770.0 762240.0 711840.0 751640.0 714310.0 672960.0 677790.0 531130.0 649380.0 625180.0 True False 621406.3077384728 787610.6976161901 812060.8845758025 846797.5469326146 805273.1444529248 626439.8591774437 645002.7082907575 570765.6176234919 489349.00024619076 585280.477156473 1.0617239631116924 1.3456978805148574 1.387473042875306 1.4468234974224603 1.3758756286648486 1.070324201177766 1.1020403609299239 0.9752001645373513 0.8360931542149573 1.0 19.15876863080987 2.3898121750612766 1.5858409073667121 0.951146481309765 1.333899755622705 0.6743553413888244 0.11424797685106762 0.22875118210151268 1.1649078889814 0.058386498235479665 0.04126770724236502 245.36475255777893 -2.3898121750612766 0.38275327431294004 RPGTQGHLGPEKEEEES(ph)DGEPEDSSTS ddPTM_BT-474_Trastuzumab_2h_R1 2 RPGTQGHLGPEKEEEESDGEPEDSSTS 27 2 Q8IYB7;H7C1Q8 Q8IYB7 DIS3L2 DIS3-like exonuclease 2 1 RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGTQGHLGPEKEEEES(0.996)DGEPEDS(0.001)S(0.001)T(0.001)S(0.001) 96.492 0.0023405 2471940000.0 1691730.0 1338460.0 1192010.0 1219960.0 1255080.0 1703170.0 1698940.0 1465970.0 2309500.0 1764060.0 True False 1682621.9136488708 1383009.831983843 1359834.6468633441 1374406.810914682 1414906.9985580172 1585433.866730929 1616755.7816189372 1575368.125444826 1740354.6707144922 1651476.1805122488 1.0188593293104362 0.8374385584870295 0.8234055464496954 0.8322292668419677 0.8567528949277043 0.9600101324132722 0.9789761430997194 0.9539151360670453 1.0538176034574567 1.0 20.655324730891497 2.6301884922307996 3.543365256108093 0.986741436319627 0.866460245292978 0.5041319611566029 0.05756571916653643 0.21249916466439867 4.929990240758326 0.019673033255567834 0.018456071897781465 426.76470277254094 -2.6301884922307996 -0.12028119102664891 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK 33 1 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 163.15 1.878e-14 709520000.0 299790.0 267300.0 245400.0 246460.0 262170.0 291370.0 278510.0 273360.0 345180.0 292640.0 False True 298175.96394979995 276196.9189137377 279950.18694496254 277661.81072988705 295555.79549666564 271228.2777112037 265037.4072884802 293759.5112939536 260115.01417502837 273963.4646582908 1.0883785701925945 1.0081523799468395 1.0218522652067452 1.0134994134207242 1.0788146363432312 0.9900162346446499 0.9674188038870661 1.072257980312645 0.9494514697405535 1.0 18.0636239848826 2.6988936774224705 24.992673788567586 1.0038448113476337 1.0375331468001732 0.24570368146468624 0.03892046311056691 1026.2838406695153 646622.8578186663 0.012568748861102215 0.01185003365016453 499.9121331148289 -2.6988936774224705 0.033688335452539464 RPHS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 9 RPHSPEK 7 1 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK;RPHS(1)PEK 118.71 0.0030288 7828019000.0 6399505.0 5556989.0 4804123.0 4867871.0 4903241.0 4480054.0 5921426.0 5602883.0 8356926.0 5779408.0 True False 6365050.776131851 5741950.019594212 5480501.760214316 5484142.969485947 5527639.67756367 4170358.41189275 5634984.002335985 6020998.580323398 6297473.564371241 5410561.233439875 1.1764122983754015 1.0612485048882165 1.012926667633327 1.013599649439563 1.0216388723964889 0.7707811134486245 1.041478648741478 1.1128232951344725 1.1639224273906783 1.0 22.367346820807843 -0.5928402164853375 6.480247567439715 0.9999999999886908 1.0374712628014189 0.012156181330076565 0.10681780983387747 0.0 0.0 0.10769371016568376 0.025383650916431213 0.25536406529057515 0.5928402164853375 0.03747126281272806 RPHT(ph)PTPGIYMGR ddPTM_BT-474_Trastuzumab_2h_R1 17 RPHTPTPGIYMGR 13 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 RPHT(0.904)PT(0.096)PGIYMGR;RPHT(0.925)PT(0.075)PGIYMGR;RPHT(0.909)PT(0.091)PGIYMGR;RPHT(0.968)PT(0.032)PGIYMGR;RPHT(0.994)PT(0.006)PGIYMGR;RPHT(0.987)PT(0.013)PGIYMGR;RPHT(0.999)PT(0.001)PGIYMGR;RPHT(0.602)PT(0.398)PGIYMGR;RPHT(0.928)PT(0.072)PGIYMGR;RPHT(0.994)PT(0.006)PGIYMGR;RPHT(0.981)PT(0.019)PGIYMGR;RPHT(0.962)PT(0.038)PGIYMGR;RPHT(0.995)PT(0.005)PGIYMGR;RPHT(0.997)PT(0.003)PGIYMGR;RPHT(0.996)PT(0.004)PGIYMGR;RPHT(0.971)PT(0.029)PGIYMGR;RPHT(0.985)PT(0.015)PGIYMGR 197.75 7.6962e-08 161334712000.0 4982412.1 5234488.6 4933659.5 4704337.6 4627873.1 4971626.3 4364987.7 4397417.5 5016620.0 4778974.5 True False 4955587.3468516255 5408715.388735817 5628275.873462869 5299906.257813403 5217205.307732089 4627949.475830471 4153836.5690786904 4725575.123483618 3780341.2202640097 4473976.255924087 1.1076472165648683 1.2089280495340184 1.2580030718782536 1.1846075961613978 1.1661227081444334 1.0344152966173 0.9284440353429474 1.056236075733836 0.8449622894753587 1.0 22.0931261691384 2.6766146450985153 2.4812564854020285 0.9702680611220819 1.1951360224430472 0.7538665984623518 0.0617014638357429 0.1445997600958889 1.7547129710697056 0.02152227799851349 0.020597570916974547 474.91364214404575 -2.6766146450985153 0.22486796132096531 RPHTPT(ph)PGIYMGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPHTPTPGIYMGR 13 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 RPHT(0.4)PT(0.6)PGIYMGR 87.18 0.006468000000000001 892450000.0 395070.0 445040.0 413230.0 439750.0 404120.0 392080.0 387810.0 350720.0 439400.0 419920.0 True False 392942.9870164031 459852.8873676391 471409.1921404517 495422.3049114172 455582.28659309907 364976.432457044 369050.14872193243 376892.5073200747 331115.75765834464 393120.34608840034 0.9995488428066317 1.1697509221876619 1.199147275970414 1.2602306388894264 1.1588875801677612 0.928408911135249 0.9387714281238059 0.9587204301944817 0.8422758093112972 1.0 18.58461150734466 2.744421671183961 8.551084198206564 0.9337423903905026 1.1663966995385622 0.7092359750350745 0.07156184261530021 0.07283979096650867 60.99354335494712 0.02266306669103349 0.022965469951021784 555.1644793100733 -2.744421671183961 0.23265430914805962 RPILQLS(ph)PPGPR ddPTM_BT-474_Trastuzumab_2h_R1 7 RPILQLSPPGPR 12 1 Q8N3X1-2;Q8N3X1;F5GXL1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR 137.21 5.8978e-05 9471390000.0 2139966.0 2646116.0 2612594.0 2533620.0 2470571.0 2418955.0 2536856.0 2099376.0 2784745.0 2619875.0 True False 2128444.660828575 2734190.3714491013 2980424.5261258637 2854376.0322220903 2785183.572628426 2251738.334457582 2414138.5835489756 2256042.0975353243 2098481.908421231 2452672.334512164 0.8678063640538932 1.1147801249174734 1.2151743566344215 1.163782047873845 1.1355709987989073 0.9180754814953511 0.9842890750545965 0.9198302055231731 0.8555899941842898 1.0 21.22592307882114 2.7366794742839486 24.912213698675323 0.9338535165414659 1.1102821258120854 0.4338607450481894 0.09317121961857738 150.0655776264907 1987327.8558501878 0.030220550621380075 0.029829315574474095 545.3552197957416 -2.7366794742839486 0.17642860927061954 RPISADSAIMNPASK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPISADSAIMNPASK 15 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 139.58 8.1608e-06 3409860000.0 2054540.0 2120560.0 1885900.0 1876060.0 1856590.0 1922300.0 2132020.0 1924420.0 2502700.0 1833170.0 False True 2043478.5849208534 2191141.5576944095 2151418.3274633433 2113569.003643233 2093015.7316289227 1789415.9256074673 2028886.0474926757 2068029.9924067573 1885943.1194618593 1716175.5211442027 1.1907165437008636 1.2767584263371494 1.2536120582986505 1.2315575986272553 1.2195813923703296 1.042676523211585 1.182213603734415 1.2050224274426007 1.0989220486051856 1.0 20.710765680748292 2.943498425078704 11.188703024075155 1.1316784625941738 1.2399806144071626 0.49998622431852435 0.0618895180545728 0.9233704227127291 181.3857999659254 0.018929413715762337 0.020104187440426725 878.007903091415 -2.943498425078704 0.10830215181298875 RPKEEDPATGTGDPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPKEEDPATGTGDPPR 16 2 P45974-2;P45974;F5H571 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 52.172 0.091072 55876000.0 62595.0 82947.0 83789.0 92960.0 80813.0 102550.0 104140.0 79400.0 139780.0 110430.0 False True 62257.995474958254 85707.84075247975 95585.76289295618 104728.72646859645 91104.05653382186 95460.95987673398 99102.3503465668 85325.23118503061 105333.09195603893 103382.26285612052 0.6022115762894854 0.8290381578488114 0.9245857098909228 1.0130241259504045 0.8812348851428554 0.9233785103890519 0.9586010947012239 0.8253372370440344 1.018870056100759 1.0 16.657629160239104 4.695345967568251 2.1435316122892307 0.9319573125258886 0.5314171314402729 0.7613881700368619 0.05801880998382368 0.284178747345688 1.5846746854127083 0.014604688226783676 0.2110784982404397 49584.50334683682 -4.695345967568251 -0.40054018108561573 RPKS(ph)ESQGNATK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPKSESQGNATK 12 2 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 RPKS(0.994)ES(0.006)QGNATK;RPKS(0.997)ES(0.003)QGNATK;RPKS(0.833)ES(0.167)QGNATK;RPKS(0.989)ES(0.011)QGNATK 173.51 2.5895e-05 1030490000.0 631270.0 248673.0 260037.0 373706.0 229598.0 270790.0 354629.0 390032.0 746260.0 490341.0 True False 627871.3124606909 256949.93047899724 296647.9493178779 421017.1412830604 258835.94436603546 252070.9246710948 337474.24045566237 419138.16838236566 562354.2223716807 459047.0175779491 1.3677712487350477 0.5597464325870836 0.6462256325791402 0.9171547252489644 0.5638549744462362 0.5491178790379387 0.7351626903846665 0.9130615216581672 1.2250471102912446 1.0 18.808282402700293 1.5056434127202059 3.476900819643229 1.1089308494472017 0.7419125506041231 0.25194792841642 0.2370282850140578 0.2639781531245125 6.698094885026048 0.15782907760223855 0.05986072989574078 32.03637825233553 -1.5056434127202059 -0.36701829884307857 RPLDDGVGNQLGALVHQR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPLDDGVGNQLGALVHQR 18 1 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 ;;; 225.68 2.5505e-19 2593310000.0 1106290.0 1317360.0 1238980.0 1370380.0 1281880.0 1251740.0 1269280.0 1135110.0 1405510.0 1243210.0 False True 1100333.8575603727 1361207.5312390632 1413417.6145927869 1543869.967491773 1445119.8197019743 1165210.1600790145 1207880.0772795319 1219817.6721717878 1059140.8933690959 1163867.2734343703 0.9454118031117745 1.1695556377510092 1.2144147763705366 1.3265000251584365 1.241653453694661 1.0011538142495249 1.0378159991691212 1.0480728344326735 0.9100186228656082 1.0 20.150495113072125 2.729605100141302 24.471151748423054 1.00933831523001 1.1890598627462068 0.4592086955964435 0.09714601737128663 474.46211100425734 1296475.5305916069 0.032804532274132964 0.03135046664497213 536.5437003888085 -2.729605100141302 0.17972154751619684 RPLDS(ph)PEAEELPAMK ddPTM_BT-474_Trastuzumab_2h_R1 6 RPLDSPEAEELPAMK 15 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK 207.22 2.1453000000000004e-09 3022880000.0 4199410.0 4296290.0 4045850.0 3966590.0 3877820.0 4791690.0 4796710.0 4280360.0 6157920.0 5103890.0 True False 4176800.8431583093 4439289.415487848 4615470.512841381 4468759.887296361 4371637.391360113 4460451.748724986 4564674.812088345 4599782.198427677 4640383.127900494 4778155.370539931 0.8741450453684874 0.9290801724151991 0.9659523717663944 0.9352479232569183 0.9149215654044585 0.9335091479499035 0.9553215536338948 0.9626690305610348 0.9711662279780852 1.0 22.18802233577289 7.9999999211776975 0.06746560406145889 1.073761924904015 0.6476671119215928 0.6449441406127294 0.01973273057284897 188.0307099670664 0.9389156425574494 1.073884203722249 7.662138314098164 99999981.85049579 -7.9999999211776975 -0.42609481298242213 RPLEAGS(ph)PGQDLEPACDGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPLEAGSPGQDLEPACDGAR 20 1 Q9HCM7;A0A3B3IRR3;A0A1B0GUN3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 RPLEAGS(1)PGQDLEPACDGAR;RPLEAGS(1)PGQDLEPACDGAR;RPLEAGS(1)PGQDLEPACDGAR 144.4 9.6095e-08 1188270000.0 426602.0 517302.0 454829.0 501682.0 455639.0 513035.0 503151.0 409867.0 445851.0 507625.0 True False 424305.22223193746 534520.0843543374 518864.9697554621 565194.8897613856 513661.92586606153 477570.09800448694 478811.66390652495 440453.3568024543 335976.99514731613 475227.9379003723 0.8928457028569933 1.1247657002572842 1.0918233722703354 1.1893132635646395 1.0808748495206244 1.0049284983422115 1.0075410676021828 0.926825469791281 0.7069807314605965 1.0 18.858260126832935 1.8466451516613656 1.656889872329026 0.8531774756338325 1.0773241098161013 0.4171131786941208 0.09927732048161429 0.3222492489167925 1.6752995768083685 0.06795239235963338 0.029417916469948124 70.24980962636415 -1.8466451516613656 0.22414663418226877 RPLEDGDGSWTS(ph)PSSTTHWEGMPSPFK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLEDGDGSWTSPSSTTHWEGMPSPFK 27 1 C9JSZ1 C9JSZ1 FUBP1 1 RPLEDGDGS(0.023)WT(0.105)S(0.811)PS(0.015)S(0.015)T(0.015)T(0.015)HWEGMPSPFK 116.94 0.00026955 147720000.0 93777.0 124920.0 111260.0 104550.0 97755.0 117490.0 117000.0 105100.0 114890.0 117520.0 True False 93272.11505160424 129077.88668426541 126924.44091074381 117786.01928024687 110203.51981072058 109368.19284171118 111340.26301659616 112943.09568698633 86576.8989471263 110019.77298606618 0.8477759271818984 1.1732244412157886 1.1536511798367242 1.070589550254428 1.001670125466244 0.9940776087182299 1.0120022973570144 1.026570884683523 0.7869212651265071 1.0 16.747403305690167 2.00477842218172 0.8954679663073238 0.9263370610769853 1.0646044590424504 0.18024516931580803 0.10228207406568919 0.962749118520384 1.4264966756230628 0.08391396913931905 0.04107113916351919 101.10634762580398 -2.00477842218172 0.13826739796546506 RPLEDGDQPDAK ddPTM_BT-474_Trastuzumab_2h_R1 6 RPLEDGDQPDAK 12 1 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 ;;;;; 165.72 8.6313e-05 7152800000.0 10411990.0 9622130.0 8873850.0 8460850.0 8576940.0 11025160.0 10601730.0 9847440.0 13610800.0 10324140.0 False True 10355933.002720827 9942396.780349584 10123210.947113108 9531992.742489511 9669162.469493747 10263016.639635017 10088883.817358447 10582305.977087103 10256600.715375984 9665244.54625906 1.071461043034767 1.028675139337038 1.0473828053353604 0.9862133024020459 1.0004053620387912 1.061847591182504 1.043831200449383 1.0948823825862732 1.0611837772222543 1.0 23.204374804731394 2.707205885067471 23.665861840108768 1.0604548795588844 1.0258157879591743 0.1157606262997708 0.03144791196989305 543.7326460706274 410396.50467777473 0.010278859092597539 0.009692656410057574 509.57238570978524 -2.707205885067471 -0.034639091599710126 RPLEDGDQPDAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLEDGDQPDAKK 13 2 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 130.24 8.1222e-05 301990000.0 211580.0 193840.0 187040.0 155590.0 163690.0 227050.0 240030.0 229260.0 360320.0 242970.0 False True 210440.87678874776 200291.84722124538 213373.6062191757 175287.6780469978 184534.95123335737 211354.5679182102 228418.83189635535 246368.54535869142 271523.9640406349 227463.44658291753 0.9251634930803507 0.880545205087415 0.938056683060917 0.7706191068510868 0.8112729935536637 0.9291803632332849 1.0042001707429926 1.0831126893563638 1.193703727432337 1.0 17.795275197020135 2.1100323355509647 1.9145093751679203 1.1016790800221221 0.8658694860578522 0.7038332675040258 0.06435964910066766 0.18358740352761976 1.2996223569493819 0.03573241164788146 0.020285060122357756 128.83454723450745 -2.1100323355509647 -0.23580959396426993 RPLEEDFRRS(ph)PTEDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPLEEDFRRSPTEDFR 16 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 RPLEEDFRRS(0.985)PT(0.015)EDFR;RPLEEDFRRS(0.994)PT(0.006)EDFR;RPLEEDFRRS(0.993)PT(0.007)EDFR;RPLEEDFRRS(0.99)PT(0.01)EDFR 144.01 7.4999e-06 2466630000.0 1075820.0 1810450.0 1667680.0 2499980.0 2022660.0 1901280.0 2080420.0 1741790.0 2664820.0 2280660.0 True False 1070027.9046548395 1870709.7338098635 1902474.8482655878 2816477.211671274 2280233.761754916 1769848.9887317086 1979782.1366238187 1871771.2144304067 2008110.8177585592 2135106.3262287388 0.5011590718036236 0.8761670137122015 0.8910445465383214 1.3191273788439606 1.0679719945294328 0.8289277995151707 0.9272522460840295 0.8766641695716092 0.9405202884230627 1.0 21.02587648577573 4.775920505476458 2.0893243685998053 0.9778821098732262 0.34055701211712325 0.5538492274458645 0.12957939027609022 0.6481659683635325 2.889409532883069 0.03574605792759643 0.8063351758335208 59692.60135117989 -4.775920505476458 -0.6373250977561029 RPLEMEQQQAYRPEMK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPLEMEQQQAYRPEMK 16 2 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0QYZ0;M0R0K8;M0QZV6;M0R203 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ;;; 223.06 5.1028e-15 3119180000.0 2539040.0 2291260.0 2082890.0 2043020.0 2135540.0 2495150.0 2501910.0 2325250.0 3532220.0 2497810.0 False True 2525370.0907538626 2367523.2040040796 2376142.807195571 2301666.1225244403 2407488.3606627397 2322666.1534513202 2380883.055075661 2498771.9623802556 2661751.710323079 2338397.6273172717 1.0799575150318192 1.0124553567565078 1.0161414720222763 0.9842920193025634 1.029546186900956 0.9932725411272336 1.0181686071103018 1.0685830045281792 1.1382801963311842 1.0 21.157088839733984 1.6839525870579075 4.454010019906348 1.0791736569727886 1.0167219072579146 0.24133848135083935 0.03945747338474151 0.1867811498008177 8.649784849169933 0.020325744081361626 0.009733181476649066 48.300606826163786 -1.6839525870579075 -0.062451749714873994 RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYK 34 1 Q14847;Q14847-2;C9J9W2;Q14847-3;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 0 237.42 2.3398999999999997e-47 1496800000.0 144100.0 155830.0 145500.0 139880.0 132950.0 173930.0 160260.0 95964.0 186630.0 178830.0 False True 143324.18161101523 161016.70734877576 165985.13529132845 157588.79365778057 149880.39444361185 161906.62848718022 152507.61154734786 103125.32097531814 140637.53721387556 167416.9162959343 0.8560913961506041 0.961770834819074 0.9914478116292922 0.9412955222471004 0.895252390019393 0.96708643349389 0.9109450521580984 0.6159790973155234 0.8400437681296065 1.0 17.35308578382587 1.9707469698281346 24.32050110364284 0.7728694398546642 0.9377763143175019 0.18445761890446277 0.09670770696137683 491.1283480476509 408315.28464688803 0.03757526399446916 0.02429901418354483 93.48608435490299 -1.9707469698281346 0.1649068744628377 RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQR 44 2 Q14847;Q14847-2;C9J9W2;Q14847-3;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;; 227.62 4.0364e-45 19020800000.0 710280.0 707034.0 763280.0 760600.0 789470.0 886480.0 993000.0 479405.0 929130.0 834380.0 False True 706455.9313995262 730567.1992789222 870743.1894513075 856891.8820139247 890004.3249447042 825199.7241494587 944964.7963716234 515180.6354692638 700158.3612041385 781129.1540513431 0.9044034878681424 0.9352706853787491 1.1147237110984518 1.096991294678526 1.1393817787092924 1.0564190567840703 1.2097420656629487 0.6595332318570731 0.8963413509440176 1.0 19.575201581708527 1.7418900229172227 24.999999999999037 0.826166460642793 1.0659078520875385 0.40830301526800883 0.11644093983318109 0.4932499388120009 3724.1087310588264 0.05349920134209317 0.02966808458818361 55.193765353207745 -1.7418900229172227 0.2397413914447455 RPLFLAPDFDRWLDES(ph)DAEMELR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPLFLAPDFDRWLDESDAEMELR 23 2 H3BS72;Q9P035;H3BPZ1 H3BS72 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR 300.2 3.7834999999999998e-62 1031741000.0 224032.0 256611.0 359503.0 317744.0 410754.0 501829.0 376807.0 306813.0 294800.0 329934.0 True False 222825.8366042952 265152.1420103747 410117.89754390746 357970.3578209741 463061.0871702997 467138.7424084012 358579.4058674749 329708.94402484555 222150.4901176151 308877.329649291 0.7214056041513265 0.8584383396199285 1.327769499981006 1.1589402117255574 1.4991747296445284 1.5123762658101363 1.1609120237947448 1.067443002046176 0.7192191488117685 1.0 18.236674461288498 1.4803953479356964 3.6271991096628624 0.8612949621153992 1.192854198534299 0.20503854646115927 0.2435458676903733 0.3411672592200676 8.997983259254983 0.18489243571441435 0.06880261130410341 30.227021013637074 -1.4803953479356964 0.33155923641889984 RPLHSAQAVDVASASNFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLHSAQAVDVASASNFR 18 1 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 137.44 2.6923e-06 526480000.0 157130.0 173420.0 178210.0 179400.0 166940.0 193620.0 184980.0 164890.0 202930.0 202010.0 False True 156284.02953878418 179192.17986539644 203300.41897091182 202112.02160570337 188198.81946909803 180235.5051324548 176031.81070777721 177194.92909445445 152920.62062268553 189117.5488505377 0.8263856553169355 0.9475174617825369 1.0749949975905357 1.0687110891302603 0.9951420194105531 0.9530342701030747 0.9308063253659112 0.9369565657520981 0.8086009022015237 1.0 17.528923716439206 2.300325357749005 1.9073819083423331 0.9117105805987213 0.9895950169853238 0.1232603680558626 0.0782865849846135 0.6773459853386073 5.011415747815054 0.03882734937598367 0.0266015921064618 199.6757653528668 -2.300325357749005 0.07788443638660247 RPLIDQVVQTALSETQDPEEVSVTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLIDQVVQTALSETQDPEEVSVTVK 26 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 180.26 3.4928000000000004e-17 174060000.0 109470.0 130550.0 119800.0 118850.0 124830.0 139960.0 121030.0 143540.0 156950.0 130220.0 False True 108880.62568326027 134895.27783085842 136666.79867973295 133896.3978140349 140726.36057462273 130284.89463040154 115175.31652050118 154251.68368135093 118271.7755222513 121909.24811304893 0.8931285146004103 1.1065221049166614 1.1210535771084327 1.098328468812063 1.1543534453114197 1.0687039469686967 0.9447627501868994 1.2652992785117516 0.9701624557029133 1.0 16.89544804830918 4.740705061081077 24.360366290352733 1.0944232335779815 0.8931284195955295 0.2711088648454798 0.09004293062460207 162.50106948169912 1845785.778042826 0.020369105055231946 0.13540312179027236 55043.37577934418 -4.740705061081077 -0.20129481398245208 RPLLAFACDDKDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPLLAFACDDKDGK 14 2 Q96J01;D6REC9 Q96J01 THOC3 THO complex subunit 3 0 ; 115.82 0.0002236 851830000.0 1466380.0 1217700.0 1063390.0 1026370.0 1033370.0 1464340.0 1536990.0 1348370.0 2178010.0 1478820.0 False True 1458485.1730101337 1258230.4083848067 1213106.0688484241 1156308.3367639128 1164963.544236144 1363113.6224855843 1462639.9218280176 1448992.2162841265 1641268.6193387634 1384440.4415185002 1.0534835080448957 0.9088367911332739 0.8762428721872998 0.8352171043888572 0.8414688774609714 0.9845953510217283 1.0564845391425763 1.0466266173897836 1.1855104561511982 1.0 20.400871559775776 2.4064079216267413 2.8631215811242914 1.0741155668766722 0.8983887287820012 0.5509831967987291 0.07164415780121351 0.2001938290473856 3.3502110750818583 0.027819265936599877 0.022710775809937543 254.92235484825054 -2.4064079216267413 -0.17572683809467105 RPLPALPVPEAPSPS(ph)PVPSPAPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPLPALPVPEAPSPSPVPSPAPGR 24 1 O43281-3;O43281-2;O43281 O43281-3 EFS Embryonal Fyn-associated substrate 1 RPLPALPVPEAPS(0.012)PS(0.985)PVPS(0.003)PAPGR;RPLPALPVPEAPS(0.002)PS(0.998)PVPSPAPGR;RPLPALPVPEAPS(0.076)PS(0.924)PVPSPAPGR;RPLPALPVPEAPS(0.006)PS(0.986)PVPS(0.008)PAPGR;RPLPALPVPEAPS(0.129)PS(0.869)PVPS(0.003)PAPGR 170.83 4.5706e-12 3826830000.0 994170.0 1176720.0 1106510.0 1018650.0 1020340.0 1261900.0 1142920.0 964130.0 1088590.0 1085910.0 True False 988817.499182672 1215886.4138577392 1262296.990042665 1147610.9855554611 1150274.2509710037 1174667.8231930828 1087632.5932216074 1036078.2763529398 820321.5808586661 1016606.294105675 0.9726651358700772 1.196024873058035 1.2416773310981004 1.1288647259114535 1.1314844868070766 1.1554795893000616 1.0698660824035282 1.0191539068370559 0.8069216033925073 1.0 19.955329637396034 1.6433884132435705 2.1354723980139356 0.9063071781719524 1.141442557842908 0.5497346213733814 0.08108725959745372 0.19496524221332076 1.9232637055565824 0.05724295041964106 0.02197946269605047 43.99348973196223 -1.6433884132435705 0.23513537967095555 RPLPVES(ph)PDTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLPVESPDTQR 12 1 P57682 P57682 KLF3 Krueppel-like factor 3 1 RPLPVES(0.966)PDT(0.034)QR 85.421 0.0071562 1084500000.0 434540.0 565360.0 486580.0 482110.0 520780.0 553270.0 525250.0 428220.0 542520.0 463410.0 True False 432200.4849219327 584177.6658326628 555086.2345708217 543145.0765681475 587098.2460951057 515023.7471574904 499841.650850147 460175.95085710083 408823.2153955517 433834.7770547384 0.996232915802876 1.3465441147862498 1.279487638910019 1.2519629713770435 1.3532761252586938 1.1871426045047284 1.1521474932081812 1.060717063719949 0.9423477254889805 1.0 18.726786181373654 1.7972628053949975 1.4802216615692625 0.9718387281594483 1.2511908898305386 0.5558087184733325 0.09548210874361904 0.2713485171930991 1.1311739290199254 0.06979407423225147 0.028446680014614756 62.69931633899755 -1.7972628053949975 0.27935216167109034 RPLQEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLQEDR 7 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 0 75.043 0.071417 54392000.0 25079.0 28681.0 25995.0 30903.0 28398.0 23138.0 29195.0 23274.0 30445.0 27080.0 False True 24943.977450538834 29635.629746969375 29654.870047409517 34815.31663144404 32014.3169718668 21538.524520993375 27782.726314269425 25010.82406297734 22942.23769209903 25351.731215645566 0.9839161372594906 1.1689785401590265 1.1697374745401337 1.3732914859068133 1.2628059480257303 0.8495879172031096 1.0958906939311346 0.9865529044242217 0.9049574365138605 1.0 14.629796648708881 2.749281860313028 24.990409775250136 0.9789547287290505 1.1993442412823179 0.5122966981274889 0.109031641104296 626.7061477316381 1460804.1787468954 0.034638207053800475 0.03640488208395222 561.4122184806995 -2.749281860313028 0.22038951255326733 RPLRPQVVTDDDGQAPEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPLRPQVVTDDDGQAPEAK 19 2 Q9HDC9;Q9HDC9-2 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein 0 ; 92.993 0.0010279999999999998 1516910000.0 714150.0 853960.0 980010.0 678740.0 906100.0 1272120.0 877040.0 790700.0 1182770.0 919480.0 False True 710305.0957495235 882383.542370279 1117986.889600376 764668.4144072194 1021486.4641245332 1184181.3386483747 834614.2245818421 849706.0490932439 891292.1818060104 860797.9991935667 0.8251704771792783 1.0250762004522949 1.2987796099058722 0.8883250369117891 1.1866738364651248 1.3756785445107536 0.9695819755200933 0.9871143402857415 1.035425480357775 1.0 19.715315198989256 RPLS(ph)GPDVGTPQPAGLASGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPLSGPDVGTPQPAGLASGAK 21 1 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 RPLS(1)GPDVGTPQPAGLASGAK;RPLS(1)GPDVGTPQPAGLASGAK 248.73 9.1427e-31 1393740000.0 635760.0 566930.0 553210.0 519070.0 518260.0 778880.0 688750.0 692790.0 858390.0 736660.0 True False 632337.1387995757 585799.9223335779 631097.1594124804 584784.2087785542 584257.339032315 725037.8588863045 655432.5312194929 744489.5077163383 646851.2863367021 689645.7281136443 0.9169014075229291 0.8494215195617741 0.9151034127894782 0.8479487147380541 0.8471847431440005 1.0513192923988186 0.9503901851350067 1.0795245694520659 0.937947209657927 1.0 19.395495912343453 2.7421186642085265 24.999375515467932 1.0101078053779406 0.874564054621049 0.6626864853434211 0.04573689284003662 169.33974492885244 1189807.5622491678 0.013390874850888093 0.013701946827330273 552.2283064595205 -2.7421186642085265 -0.13554375075689162 RPLS(ph)SSHEASEGQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPLSSSHEASEGQAK 15 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 RPLS(0.441)S(0.441)S(0.117)HEASEGQAK;RPLS(0.763)S(0.08)S(0.142)HEAS(0.016)EGQAK 223.86 7.413399999999998e-13 725620000.0 449400.0 336490.0 341490.0 424610.0 329490.0 478050.0 542100.0 528690.0 722960.0 645850.0 True False 446980.4803330343 347689.86623749934 389568.8237157098 478365.58246375644 371448.59845976444 445003.5287086553 515876.55197689554 568143.5324334232 544796.195167677 604631.300059996 0.7392612329012435 0.5750444381609073 0.6443080662166413 0.7911690685154564 0.6143390168899734 0.7359915516522199 0.8532084791602857 0.9396528634509127 0.9010386910396772 1.0 19.20569613959579 2.158986455664381 1.7705246053915984 0.9456795748228842 0.670133539205231 0.7957697946743634 0.06154708034516641 0.15367254278034662 0.9406168046365578 0.03326601743860371 0.019311737958962096 144.20703769959266 -2.158986455664381 -0.27554603561765323 RPLSAS(ph)LGQLNEVGLPSAAILPDEGAVDLPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPLSASLGQLNEVGLPSAAILPDEGAVDLPSR 32 1 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 RPLS(0.154)AS(0.846)LGQLNEVGLPSAAILPDEGAVDLPSR 258.48 1.8313999999999996e-59 413920000.0 115290.0 83614.0 80935.0 94066.0 92050.0 95896.0 80340.0 88014.0 120130.0 93911.0 True False 114669.29144992324 86397.04144426963 92329.944500369 105974.74595519583 103772.02187690469 89266.93523490278 76453.64727139611 94582.05160603618 90525.57115952877 87917.51957874796 1.3042826048705076 0.9827056297565763 1.0501882325930365 1.205388260075672 1.1803338216788044 1.0153486547689297 0.8696065088928763 1.0758043682217262 1.0296647538883847 1.0 16.423863063585465 2.655647921184562 6.36140018487738 0.9968662626491918 1.133467699449435 0.37178428939747965 0.0948116904609092 0.29338759873486353 18.541106149122502 0.03115794504991005 0.029360070283410505 452.5305685026252 -2.655647921184562 0.13660143680024328 RPMEEDGEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPMEEDGEEK 10 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;; 166.29 8.9673e-06 1351400000.0 2512750.0 2273520.0 2237090.0 2113850.0 2320710.0 2528270.0 2382410.0 2345680.0 2753610.0 2334050.0 False True 2499221.63319277 2349192.7388281366 2552052.826865143 2381463.1932620746 2616238.6625741636 2353496.645807414 2267163.726609988 2520726.5527216936 2075019.7119836058 2185088.930719259 1.1437619760263529 1.0751016609904567 1.1679400279718095 1.0898701466023057 1.197314500931083 1.0770713323016654 1.037561306881781 1.1536036438992685 0.9496271217211181 1.0 21.05926056634835 1.2355703944878482 24.999998146151203 0.974813501240868 1.116272468760434 0.5892867829156305 0.04772804596874614 52.42750110186825 438286.4812823065 0.03769868795284111 0.01100842348174328 17.2016613916509 -1.2355703944878482 0.141458967519566 RPMEEDGEEKS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 12 RPMEEDGEEKSPSK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 RPMEEDGEEKS(0.828)PS(0.172)K;RPMEEDGEEKS(0.965)PS(0.035)K;RPMEEDGEEKS(0.883)PS(0.117)K;RPMEEDGEEKS(0.857)PS(0.143)K;RPMEEDGEEKS(0.667)PS(0.333)K;RPMEEDGEEKS(0.879)PS(0.121)K;RPMEEDGEEKS(0.904)PS(0.096)K;RPMEEDGEEKS(0.909)PS(0.091)K;RPMEEDGEEKS(0.943)PS(0.057)K;RPMEEDGEEKS(0.932)PS(0.068)K;RPMEEDGEEKS(0.575)PS(0.425)K;RPMEEDGEEKS(0.888)PS(0.112)K 208.49 4.1552e-09 47639900000.0 18095850.0 10922800.0 9578680.0 8761380.0 9218270.0 16544450.0 15652770.0 14798500.0 28615390.0 15227330.0 True False 17998423.95423792 11286358.795027975 10927274.88462092 9870569.809675464 10392162.043533012 15400771.112946171 14895585.715711856 15902839.215260368 21563510.561081074 14255508.762626886 1.2625592151031249 0.7917191159544571 0.7665299826596531 0.6924038962083734 0.7289927154881866 1.0803382306018972 1.0449003233587169 1.1155574648413968 1.5126440536175947 1.0 23.765016192524303 2.1964745726223067 1.459196011739355 1.2200265796554663 0.8397286377543625 0.3682854705164792 0.19782698139154442 0.4269745252352932 1.7653969475583795 0.11839187210278253 0.06728287181935597 157.2079746541619 -2.1964745726223067 -0.3802979419011039 RPMEEDGEEKS(ph)PSKK ddPTM_BT-474_Trastuzumab_2h_R1 9 RPMEEDGEEKSPSKK 15 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 RPMEEDGEEKS(0.997)PS(0.003)KK;RPMEEDGEEKS(0.979)PS(0.021)KK;RPMEEDGEEKS(0.977)PS(0.023)KK;RPMEEDGEEKS(0.863)PS(0.137)KK;RPMEEDGEEKS(1)PSKK;RPMEEDGEEKS(0.5)PS(0.5)KK;RPMEEDGEEKS(0.993)PS(0.007)KK;RPMEEDGEEKS(0.97)PS(0.03)KK;RPMEEDGEEKS(0.996)PS(0.004)KK 162.76 6.1746e-06 10110360000.0 9569310.0 5366964.0 4880522.0 4081939.0 4255242.0 8200070.0 7922030.0 7037290.0 15247330.0 7468490.0 True False 9517789.898210287 5545600.152341746 5567657.075342302 4598712.05886937 4797121.845904662 7633218.461788495 7538811.143806547 7562448.314434557 11489829.825254465 6991844.574104024 1.361270233818084 0.7931526643028091 0.7963073286788236 0.6577251553762801 0.6861024719674055 1.091731714125905 1.0782292231907364 1.0816099005466886 1.6433188271675558 1.0 22.737241683987968 2.05927328887069 1.4028886582147206 1.269067760377678 0.8527494770646559 0.30031410678985604 0.24557852151501763 0.5076802995530427 1.8746708295264267 0.16375588167946628 0.08134370876788947 114.62340062306856 -2.05927328887069 -0.41631828331302223 RPMEEDGEEKSPS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 2 RPMEEDGEEKSPSK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 RPMEEDGEEKS(0.114)PS(0.886)K;RPMEEDGEEKS(0.437)PS(0.563)K 83.46700000000001 0.0075518 1614790000.0 1077430.0 666653.0 520243.0 511393.0 576139.0 920930.0 901170.0 857130.0 1575840.0 910630.0 True False 1071629.2365937277 688842.1421047514 593488.6923667815 576135.301365694 649506.8866066057 857268.2767360358 857576.9642962902 921093.3930179502 1187495.3471741625 852512.8137704338 1.2570241986794324 0.8080138280364242 0.6961639552864214 0.6758083773751192 0.7618734593958915 1.0055781718336525 1.0059402632359964 1.080445218112562 1.3929354820160316 1.0 19.701361993294007 2.1126103769053226 1.4345227163778735 1.1741178977840194 0.8279779557175098 0.352836572531926 0.18131315789695937 0.4491807022913097 1.755190502370198 0.11798882196527036 0.0617191808302654 129.60160410133975 -2.1126103769053226 -0.34613994206650966 RPMEEDGEEKSPSK ddPTM_BT-474_Trastuzumab_2h_R1 5 RPMEEDGEEKSPSK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;; 152.34 3.7642e-06 968894000.0 1824550.0 1622161.0 1567166.0 1540035.0 1673456.0 2092940.0 1945530.0 1953329.0 2940810.0 2101320.0 False True 1814726.825526562 1676153.6482679688 1787809.3507489373 1735003.2730966539 1886560.702249183 1948259.9840508203 1851417.2812536606 2099096.3287836844 2216086.7803350883 1967211.958569436 0.9224866784798513 0.8520452719730689 0.9088036207593202 0.8819605155096529 0.9590022539417141 0.9903660739575832 0.9411376711028222 1.067041260927549 1.1265114420850892 1.0 20.907720979458436 2.3708694697575874 0.8597021464405442 1.0689932931963009 0.8880971215421989 0.6909368887922493 0.04433272639542249 0.32488543905838296 0.4711628360573567 0.03238364892550824 0.021141244928340464 234.8926728395039 -2.3708694697575874 -0.180896171654102 RPMS(ph)SPEMK ddPTM_BT-474_Trastuzumab_2h_R1 5 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 RPMS(0.627)S(0.373)PEMK;RPMS(0.585)S(0.415)PEMK;RPMS(0.716)S(0.284)PEMK;RPMS(0.912)S(0.088)PEMK;RPMS(0.648)S(0.352)PEMK 113.77 0.00107 1750540000.0 1853680.0 1597170.0 1394480.0 1389050.0 1354960.0 1849240.0 1857650.0 1704010.0 2604130.0 1932980.0 True False 1843699.9928432114 1650330.8379403448 1590810.6629625573 1564903.587577494 1527506.1245228779 1721406.3914427247 1767788.37258786 1831171.878987455 1962377.0550542255 1809615.5614925602 1.018835178076463 0.9119786948445346 0.8790876343097238 0.8647712922443985 0.8441053210566999 0.9512552986795266 0.9768861465414227 1.011912097770156 1.0844165450454397 1.0 20.787251810037542 2.072867232610016 1.685007826104544 1.0365926494198519 0.9018321088661736 0.5576741421997291 0.0491564360536824 0.2795669846851512 1.5042410356352656 0.030729498550111145 0.016177050642832286 118.26799454816714 -2.072867232610016 -0.13476054055367825 RPMSS(ph)PEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 RPMS(0.033)S(0.967)PEMK;RPMS(0.025)S(0.975)PEMK 100.02 0.0030268 968490000.0 1085830.0 932350.0 791560.0 835330.0 765020.0 999790.0 1110270.0 952430.0 1466820.0 1134910.0 True False 1079984.0119270547 963382.706132524 903004.7676371415 941082.6923516864 862440.7623712069 930676.8705525099 1056561.9984567205 1023505.162941545 1105341.865381004 1062479.0721546656 1.016475561948613 0.9067309948786303 0.8499035805061869 0.8857423332049336 0.8117249412002169 0.8759484256618194 0.9944308797669346 0.9633179511629504 1.0403422470613133 1.0 20.019002993825307 2.2357747974750604 24.98906413768953 0.9928417021533471 0.8860763282182805 0.503055595543526 0.052489599546268355 64.10041039456127 574977.2872050393 0.01990598230332772 0.015357710847340257 172.09759349784167 -2.2357747974750604 -0.10676537393506658 RPNEDS(ph)DEDEEK ddPTM_BT-474_Trastuzumab_2h_R1 7 RPNEDSDEDEEK 12 1 Q12996;E9PLP8;H0YE74 Q12996 CSTF3 Cleavage stimulation factor subunit 3 1 RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK 218.28 2.1238e-11 6654970000.0 6627473.0 4615822.0 3918064.0 3767051.0 3785910.0 5006545.0 4983409.0 4816116.0 6990352.0 4772272.0 True False 6591791.421749471 4769456.844946678 4469693.354777213 4243959.270355555 4268023.197653368 4660454.328289256 4742342.468198911 5175519.03166151 5267673.415517814 4467701.515212387 1.4754323670246596 1.0675415151855654 1.0004458309397 0.9499200552912955 0.9553062538132594 1.0431436192459482 1.0614725384073624 1.158429902722692 1.1790567023292733 1.0 22.09110137266837 4.737490828779057 5.377302728073362 1.0484383522643954 1.491938697720391 0.7602720499918243 0.07238464175490389 0.08195599137558662 8.750974902300621 0.020060268839035264 0.13429502804376986 54637.501167663155 -4.737490828779057 0.4435003454559956 RPNEDS(ph)DEDEEKGAVVPPVHDIYR ddPTM_BT-474_Trastuzumab_2h_R1 9 RPNEDSDEDEEKGAVVPPVHDIYR 24 2 Q12996;E9PLP8;H0YE74 Q12996 CSTF3 Cleavage stimulation factor subunit 3 1 RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR 205.03 5.317899999999999e-25 72150700000.0 10381910.0 9002540.0 7567050.0 7729230.0 8441960.0 10253340.0 10541450.0 10078610.0 15770130.0 10556060.0 True False 10326014.95009864 9302184.10174965 8632424.86602232 8707749.72550419 9516993.566582887 9544550.739566172 10031519.791250404 10830727.056344576 11883792.770415556 9882363.213302342 1.0448932838452154 0.9412914604502968 0.8735182749003276 0.8811404253775006 0.963028109893022 0.9658166304511605 1.0150932094610008 1.095965289128988 1.2025253994327139 1.0 23.236424650448637 1.9993059293300677 1.836607052130257 1.1132358338329544 0.9362194264327074 0.5385776651494922 0.06392044288797283 0.24962990743477861 1.5709238046610263 0.03867700222793212 0.0195509170666697 99.84031195944347 -1.9993059293300677 -0.17701640740024704 RPNKPLFTALVTQCQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPNKPLFTALVTQCQK 16 2 Q8NCW5-2;Q8NCW5;Q5T3I4;Q5T3I3 Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase 0 ; 144.12 7.5734e-07 1594050000.0 865470.0 827280.0 851230.0 713320.0 813830.0 1038330.0 920290.0 884860.0 1235400.0 1040480.0 False True 860810.4056827567 854815.5146986799 971075.7849762023 803626.2388616534 917466.4265516709 966552.69106591 875772.0568507967 950892.7464280373 930952.2235118788 974075.675600256 0.8837202562853224 0.8775658155840056 0.9969202694418942 0.8250141739412944 0.941884136452026 0.9922767966362469 0.8990801010518187 0.9762000738208224 0.9557288482110969 1.0 19.893674333574143 7.999999998711492 0.09096092283665987 1.0510883742911619 0.5828567497747076 0.30025645968805414 0.047929306222680816 184.84712267141128 1.2060279682078714 0.8005515500182434 10.800336713902963 99999999.70331007 -7.999999998711492 -0.4682316245164543 RPNKQEESES(ph)PVERPLK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPNKQEESESPVERPLK 17 3 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 RPNKQEES(0.018)ES(0.982)PVERPLK;RPNKQEES(0.03)ES(0.97)PVERPLK;RPNKQEES(0.49)ES(0.51)PVERPLK;RPNKQEES(0.005)ES(0.995)PVERPLK 220.63 2.1787000000000002e-14 2428650000.0 1829750.0 1426940.0 1308850.0 1205960.0 1286680.0 1837750.0 1739400.0 1654940.0 2470930.0 1908540.0 True False 1819898.8293043345 1474434.8352965536 1493124.7032718565 1358634.412350136 1450531.0712501449 1710710.6680981729 1655258.5768467304 1778440.026415043 1862002.410265669 1786735.3432167002 1.0185609392087858 0.8252116581754604 0.83567200309798 0.7604004798517925 0.811833200007518 0.957450511399378 0.9264150861127148 0.9953572772637256 1.042125470531894 1.0 20.76889452306255 2.238022365506383 1.437927254089276 1.0103697158062706 0.8463072443883952 0.49393610831603985 0.06799061807315662 0.3504904149963175 1.4200187074969568 0.040808072300495726 0.024060517090521667 172.99054444248952 -2.238022365506383 -0.16406247141787533 RPNPDILDHER ddPTM_BT-474_Trastuzumab_2h_R1 4 RPNPDILDHER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ;;; 167.44 1.2488e-05 2362790000.0 1186870.0 1439750.0 1320860.0 1383140.0 1258330.0 1331790.0 1313580.0 1097750.0 1573980.0 1294940.0 False True 1180480.0237936522 1487671.2084027461 1506825.6068790664 1558245.38218346 1418570.8667937592 1239726.4919964457 1250037.1170370963 1179669.6792615522 1186093.7192514387 1212295.8205460892 0.9737557482148992 1.2271519732969232 1.242952076004274 1.2853672806374394 1.1701524023688803 1.0226270444766528 1.0311320849675174 0.973087310265707 0.9783863799160444 1.0 20.209310352920514 2.7216250035144207 3.4201983218578156 0.9960347014595972 1.1942427599743914 0.5613305230053762 0.07907436685290553 0.17707451538922583 4.3951157772022675 0.026759318601173445 0.026416047160943777 526.774815317617 -2.7216250035144207 0.19820805851479428 RPNT(ph)SPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPNTSPDR 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 RPNT(0.5)S(0.5)PDR 93.843 0.020855 2735000000.0 610550.0 773190.0 647640.0 714800.0 657040.0 617570.0 635980.0 615910.0 717230.0 631770.0 True False 607262.8666384818 798925.1617467751 738822.082612207 805293.6067099052 740710.1494188092 574878.8395034083 605215.2177204683 661872.3317276086 540478.2768896107 591449.8977144911 1.0267359399081748 1.350790937379514 1.249171037931021 1.3615584512259773 1.2523633063106387 0.9719823128296793 1.0232738564317447 1.1190674548854387 0.9138192076423592 1.0 19.17389643610364 2.7478118939946587 23.876293373226762 1.0231671064044385 1.2601877754701953 0.597568667634077 0.09873082149695132 250.94549984711708 647655.565372185 0.029594308273702477 0.03096900494359128 559.5152061364166 -2.7478118939946587 0.2370206690657568 RPNT(ph)SPDRGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 RPNT(0.669)S(0.331)PDRGS(1)R 78.441 0.032967 615190000.0 573330.0 630620.0 477080.0 650200.0 677970.0 641180.0 643970.0 616310.0 733340.0 639500.0 True False 570243.2549829518 651609.8054821595 544248.7171463032 732515.2533334928 764305.46085698 596856.7357753712 612818.710895704 662302.1817587672 552618.1832525501 598686.5624965047 0.9524904861820429 1.0883989157280671 0.90907120894246 1.2235371548660228 1.2766370731119292 0.9969435981434037 1.0236052540418956 1.1062586389061202 0.9230509215843247 1.0 19.191441363790247 1.2409539418858837 24.998863318845533 0.9615254427280604 1.075631590838368 0.14148283182366894 0.10869476077157428 116.2101202932325 1213952.1006884526 0.08260984105365325 0.026950297794946423 17.416221598176882 -1.2409539418858837 0.11410614811030761 RPNTATPSPIPS(ph)PT(ph)PASEPES(ph)EPELESASSCHRPLLIPPVRPVGPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGR 47 3 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 3 RPNTATPSPIPS(0.999)PT(0.817)PAS(0.191)EPES(0.989)EPELES(0.003)ASSCHRPLLIPPVRPVGPGR;RPNT(0.008)AT(0.007)PS(0.16)PIPS(0.826)PT(0.865)PAS(0.317)EPES(0.791)EPELES(0.009)AS(0.009)S(0.008)CHRPLLIPPVRPVGPGR 109.29 1.3035e-06 279340000.0 27560.0 43246.0 32008.0 48120.0 43930.0 48580.0 44005.0 42832.0 54249.0 44715.0 True False 27411.620022203846 44685.41696724097 36514.44818147659 54211.98706614526 49524.225106490194 45221.77894501937 41876.31003457532 46028.34133648897 40880.06084935722 41861.25041756247 0.6548208605518284 1.0674649352684804 0.8722732316222765 1.2950398405538588 1.1830565167664653 1.0802777865910813 1.0003597507686137 1.0995453044846992 0.9765609111429313 1.0 15.35332778584621 5.135137672455716 1.4976164520016728 1.0810174122916112 2.643911530832294e-10 0.5401049640823319 0.11188815323542312 2.5064972560280077 2.353294280290466 0.02941705991026689 5.364494766843178 136501.5781486205 -5.135137672455716 -1.08101741202722 RPNTS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPNTSPDR 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 RPNT(0.019)S(0.981)PDR;RPNT(0.018)S(0.982)PDR;RPNT(0.012)S(0.988)PDR;RPNT(0.171)S(0.829)PDR;RPNT(0.041)S(0.959)PDR 123.42 0.0014283 4529850000.0 1492251.0 1807553.0 1637780.0 1754295.0 1679571.0 1470376.0 1658174.0 1485396.0 1799223.0 1591299.0 True False 1484216.8864206704 1867716.308916137 1868365.1881610462 1976388.5671280797 1893454.41125274 1368732.3680127976 1577961.7887801817 1596243.7922080536 1355828.6000030062 1489740.9354403855 0.996291939834437 1.2537188611011871 1.2541544262585058 1.3266659458101253 1.2709957592009191 0.9187720733525951 1.0592189227274722 1.0714908573927215 0.910110320357282 1.0 20.50663003850085 2.7463068674732396 24.83998567394265 1.00812955715173 1.2300011200554941 0.5855861596467213 0.09543267711509332 407.6394666638031 1307181.6924547085 0.029909651369528268 0.03118978862992191 557.5795890825112 -2.7463068674732396 0.2218715629037642 RPNTSPDRGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 RPNT(0.129)S(0.067)PDRGS(0.804)R;RPNT(0.002)S(0.001)PDRGS(0.997)R;RPNT(0.024)S(0.024)PDRGS(0.952)R 98.654 0.0042212 830000000.0 137672.0 321149.0 270056.0 381188.0 370640.0 242091.0 292124.0 271440.0 402161.0 329035.0 True False 136930.78924879726 331838.2503263297 308077.5374311682 429446.3617159138 417838.80704460613 225355.81899091572 277992.8460979499 291696.2311443911 303053.8102313099 308035.7045989638 0.44452895298962003 1.077272034936193 1.0001358051407023 1.3941447543394891 1.3564622568302485 0.7315899281361223 0.9024695577412783 0.9469559105953471 0.9838268931384435 1.0 18.232738058676535 -0.34385192766632056 8.405419594822122 0.999999999753323 0.9942460326117354 0.0 0.2607666618843252 0.0 0.0 0.25373911633623725 0.059806883716807896 0.4530520212745484 0.34385192766632056 -0.0057539671415876015 RPPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPPDEQR 7 1 B8ZZU8;Q15370;Q15370-2;I3L0M9;A0A0B4J296 B8ZZU8 TCEB2 Transcription elongation factor B polypeptide 2 0 ;;;;; 155.38 0.0025898 1511224000.0 594241.0 741541.2 667723.5 720189.0 721495.5 579530.6 701023.7 603040.6 702451.9 693911.2 False True 591041.6724823822 766222.9505708778 761733.1648432948 811364.8535573576 813373.67528613 539469.0136902927 667112.5054604048 648042.5517501192 529342.0416182152 649625.1931287333 0.9098195062845386 1.1794846608096967 1.1725733128892764 1.2489738115753357 1.252066089630467 0.830431176925413 1.0269190796733865 0.997563762311939 0.8148422309005461 1.0 19.309248057232548 2.742629924083957 24.997289673112117 0.9468642648906451 1.1605435519594354 0.4916870233799484 0.11061258501065589 316.0280573830472 1941326.0941504408 0.03461820126781998 0.03551548203495663 552.878783119078 -2.742629924083957 0.21367928706879025 RPPEDFETPSGERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPEDFETPSGERPR 15 2 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 0 ; 137.17 1.0342e-05 534480000.0 131597.0 203269.0 190380.0 209190.0 205205.0 175091.0 203714.0 159539.0 187705.0 201682.0 False True 130888.49637380135 210034.6857862947 217183.84918737525 235673.43255126628 231336.64040467393 162987.37128988034 193859.57555694773 171444.6103026268 141447.61786813755 188810.48209135295 0.6932268533188376 1.1124100921720688 1.1502743215405504 1.2482009999701151 1.2252319778133154 0.8632326419834121 1.026741595115211 0.9080248533006554 0.7491512987065007 1.0 17.526579334695 2.723742352828401 24.891689059731206 0.9139792004696453 1.099939901580745 0.2308381225487569 0.15989930610338776 1144.2747073247845 1922147.2321330504 0.05280234674198069 0.049969711849948445 529.3493118400561 -2.723742352828401 0.18596070111109964 RPPEEDFRHS(ph)PEEDFR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPPEEDFRHSPEEDFR 16 2 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR 207.07 9.5957e-12 10637600000.0 4233540.0 5254640.0 4580930.0 5231740.0 4894200.0 4950670.0 4881790.0 4381960.0 5330430.0 4987050.0 True False 4210747.091030517 5429537.515903049 5225885.125842645 5894077.747577611 5517447.359803873 4608441.835523656 4645639.167451183 4708964.106342016 4016816.950602577 4668772.199371691 0.9018960255968766 1.1629476196405 1.1193275025382323 1.26244706228563 1.181776947812188 0.9870778951570706 0.9950451572849023 1.008608667387056 0.860358308152869 1.0 22.154611767059475 2.7010067000802804 9.133036797818116 0.9757761970080998 1.1349642001966154 0.4012914890426682 0.09448509943660151 0.4538716146227134 106.64834754270461 0.030806291066154918 0.02917883370396784 502.3503394749674 -2.7010067000802804 0.15918800318851556 RPPEEDFRHS(ph)PEEDFRQS(ph)PQEHFR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPPEEDFRHSPEEDFRQSPQEHFR 24 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 2 RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR 188.26 8.1343e-18 4700270000.0 634291.0 736913.0 673952.0 689688.0 705835.0 773632.0 700437.0 598296.0 773725.0 704027.0 True False 630876.0477323551 761440.7037316846 768838.5835042034 777002.4300846969 795718.903438187 720152.6407738408 666554.186380817 642943.8856055299 583050.8411338256 659095.39411216 0.9571847313273703 1.1552814820643524 1.1665057749946408 1.178892216552908 1.207289431160518 1.0926379507535908 1.0113167112610526 0.9754944297124286 0.8846228426754964 1.0 19.330127763118576 2.143226888379339 2.0458330553795436 0.9512232982813578 1.1392929450039018 0.567899722288939 0.06946436131403577 0.23380629066265818 1.923477575266356 0.03616857709636819 0.021699838079170277 139.06789736034764 -2.143226888379339 0.188069646722544 RPPEEDWR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPEEDWR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 0 ; 80.688 0.039766 330610000.0 330030.0 425490.0 388930.0 413310.0 387070.0 407620.0 383960.0 351790.0 422020.0 386530.0 False True 328253.1551497797 439652.1774358632 443687.9633598382 465635.00362237106 436361.0701563659 379442.18883426895 365386.3879303611 378042.35615342454 318018.8257782769 361861.32447501755 0.9071241742289092 1.214974211664381 1.2261270640169502 1.286777481119063 1.2058792709871147 1.0485845354840213 1.009741476131658 1.0447161124551847 0.8788417116409258 1.0 18.465077395991518 2.5788510677639342 3.4067187623333086 0.9959239941437092 1.1802424038125954 0.4144788093240668 0.10324179669281663 0.25492512749581014 5.547426149655657 0.03620481467185979 0.0332437916524894 379.184929110828 -2.5788510677639342 0.18431840966888613 RPPES(ph)PPIVEEWNSR ddPTM_BT-474_Trastuzumab_2h_R1 6 RPPESPPIVEEWNSR 15 1 Q9BTL3;A0A3B3IU46 Q9BTL3 FAM103A1 RNMT-activating mini protein 1 RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR 225.83 5.7942e-13 16820000000.0 946858.0 1168560.0 1081190.0 1128800.0 1115080.0 1132750.0 1096410.0 911739.0 1176370.0 1101583.0 True False 941760.2217338136 1207454.8131905627 1233412.154128053 1271705.9642615293 1257078.8284030287 1054445.658706682 1043372.459607062 979777.5938968336 886469.3760504046 1031279.0298273438 0.9131963265959967 1.1708323143084896 1.1960023606167483 1.2331347069807457 1.21895121693058 1.022463977458377 1.0117266321043519 0.9500606194434764 0.8595824703221366 1.0 19.97600330017206 2.386005197340653 2.103736973158017 0.9442115211233206 1.15386889119274 0.482757859928472 0.09297063265995292 0.2689411339320271 2.4362742578945653 0.040514137525728786 0.030879475343418467 243.22331162095017 -2.386005197340653 0.2096573700694193 RPPESPPIVEEWNSR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPPESPPIVEEWNSR 15 1 Q9BTL3;A0A3B3IU46 Q9BTL3 FAM103A1 RNMT-activating mini protein 0 ;;; 198.61 1.2563e-08 1726770000.0 351586.0 423899.0 393305.0 447950.0 407602.0 443177.0 471389.0 416182.0 445346.0 534388.0 False True 349693.10004087683 438008.2219626438 448678.92533165606 504660.42407065164 459507.6986536682 412541.21711644356 448586.11318914715 447239.6141693752 335596.4456306629 500282.9003274157 0.6989907106799299 0.8755210735285665 0.8968504121128529 1.0087500966760428 0.9184957118321221 0.8246158660358996 0.8966648927947867 0.8939734175936741 0.6708133446316636 1.0 18.932384616284843 -1.5844651423867941 0.008738383743084058 1.8228205673465483 6.977233663307369e-06 0.05767975462630215 0.10250134002550698 38218.72040805396 52.54339256896406 5834.0670589833535 5141.599910034385 0.026033637757877346 1.5844651423867941 -1.822813590112885 RPPINVAIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPINVAIDR 10 1 P78346;P78346-2;Q5VU10;Q5VU11 P78346 RPP30 Ribonuclease P protein subunit p30 0 96.229 0.0095335 0.0 67634.0 83257.0 91486.0 85469.0 85425.0 80941.0 76577.0 67865.0 107320.0 77566.0 False True 67269.86605884387 86028.15891508074 104366.43358943285 96289.3666366659 96303.36739635626 75345.73918461935 72872.67795745203 72929.4309114873 80872.42401432313 72615.67147240635 0.9263822077911396 1.1847051355542595 1.4372439374755581 1.3260135819752827 1.3262063882856352 1.0375961229422828 1.0035392702406305 1.0043208226642948 1.1137048294740937 1.0 16.147993315038565 2.7235709050585193 22.580843658508684 1.027421815784944 1.252756452198165 0.39410220902146464 0.12858947500030998 231.77112840170028 349143.691518053 0.04384461535367522 0.04154244122891344 529.1403802252736 -2.7235709050585193 0.22533463641322093 RPPKS(ph)PEEEGQMS(ph)S ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPKSPEEEGQMSS 14 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 RPPKS(1)PEEEGQMS(0.633)S(0.367) 90.464 0.028244 936020000.0 464840.0 362560.0 257480.0 319490.0 351660.0 414900.0 406970.0 391360.0 513270.0 385100.0 True False 462337.35308857914 374627.59042785194 293730.9459437198 359937.4012419524 396441.8165478794 386218.9395695459 387283.30632362474 420565.2704858128 386781.48596563184 360522.5882993025 1.2824088367654538 1.0391237680698098 0.8147365948118267 0.9983768366356442 1.0996310062512842 1.0712752878854586 1.074227576559241 1.1665434681076443 1.0728356516860726 1.0 18.459730127818233 3.232019895518409 24.567866671635393 1.0932961148657987 1.0184141756486338 0.026354541537553122 0.11286485375716317 330.9903491163613 1243246.7394214543 0.03368671881522249 0.04117192367791363 1706.160548345451 -3.232019895518409 -0.0748819392171649 RPPKS(ph)PEEEGQMSS(ph) ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPKSPEEEGQMSS 14 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 RPPKS(1)PEEEGQMS(0.013)S(0.987) 127.5 0.00038971 855560000.0 577570.0 465690.0 336710.0 463410.0 451030.0 611170.0 548370.0 527760.0 734220.0 491980.0 True False 574460.427294059 481190.2101344499 384115.8412642149 522077.6584855022 508465.99703574483 568921.2564394288 521843.2481231697 567144.131110978 553281.319043947 460581.41519473126 1.2472505584081812 1.0447451726444614 0.8339803313640279 1.1335187249463174 1.1039655102470174 1.2352240834530677 1.1330097804804766 1.2313656443805763 1.2012671392961498 1.0 18.81309667291595 3.291499931296531 2.7003626948849337 1.1731070741805154 1.0388644337084025 0.12313879948185835 0.11500240235680297 0.42164575822542727 6.269044940477514 0.03391136771490067 0.04664390844427378 1956.590458410943 -3.291499931296531 -0.13424264047211287 RPPPAPHDGDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPPAPHDGDRK 12 2 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 0 ; 82.54299999999998 0.0088097 30638000.0 28671.0 30410.0 27500.0 24627.0 31021.0 33837.0 32023.0 29274.0 44315.0 32782.0 False True 28516.638521647576 31422.1784667668 31371.760965715024 27744.775674936805 34971.340474127785 31497.927833730355 30473.92515026033 31458.574530359972 33394.162040577045 30689.824693917795 0.9291887068777911 1.0238630810098484 1.0222202726342837 0.9040382586621731 1.1395092941361282 1.0263313051759697 0.9929651099082278 1.0250490136098604 1.088118370620579 1.0 14.905472784430492 6.51418643738438 0.6830885715965589 1.0308005491370034 9.545364771165947e-11 0.188070599065993 0.05811412626678071 52.885882329517976 2.5708063393360807 0.021485909830266464 70.75161493039519 3267280.624881459 -6.51418643738438 -1.0308005490415497 RPPPEHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPPEHFR 8 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 91.867 0.019535 36566000.0 17103.0 24206.0 23883.0 19608.0 20862.0 22143.0 21394.0 15327.0 29135.0 21501.0 False True 17010.919348321935 25011.68207716399 27245.518805242606 22090.37078954646 23518.652041238303 20612.30652901531 20359.090486983398 16470.778568929 21955.06963899836 20128.787772067793 0.8451040142580049 1.2425826314226467 1.3535598424387245 1.0974516220097819 1.1684087639830223 1.0240212556475201 1.0114414597403223 0.8182697714059601 1.090729848593508 1.0 14.296972670145168 2.516048235265474 2.092474688976003 0.9484500649153622 1.1582633370691562 0.2234611015922987 0.13799195205407747 0.3937702643420403 3.4690156139436854 0.05514404686160223 0.0466309727486629 328.13173530408994 -2.516048235265474 0.20981327215379397 RPPQADAS(ph)PPYAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPQADASPPYAR 13 1 Q9P2Y4 Q9P2Y4 ZNF219 Zinc finger protein 219 1 RPPQADAS(1)PPYAR 60.307 0.05684400000000001 371470000.0 157690.0 232770.0 225810.0 219380.0 187690.0 203600.0 193910.0 152780.0 207540.0 215640.0 True False 156841.01456100613 240517.60873756366 257602.08522429498 247153.48550646164 211591.20897421238 189525.6112228475 184529.83249186442 164181.2194011204 156394.5478935204 201877.67058130758 0.7769111566890077 1.1914027343637967 1.2760306005242121 1.2242735157126698 1.0481159623297347 0.9388141376760873 0.9140675734988918 0.8132708235059376 0.7746995863543583 1.0 17.623121819364982 2.6667228888172634 1.950324630952191 0.856379298192646 1.132749738098637 0.3811315963298141 0.13890818627652146 0.3210420008735531 2.420529741985373 0.05393088165313213 0.05047682282872696 464.2189755359377 -2.6667228888172634 0.2763704399059911 RPPS(ph)PDVIVLS(ph)DNEQPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9;C9JMI3;C9JGN4 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 RPPS(1)PDVIVLS(1)DNEQPS(0.912)S(0.088)PR 150.34 3.6055e-08 535940000.0 154340.0 166710.0 140290.0 165820.0 186940.0 175240.0 140080.0 140940.0 181940.0 181120.0 True False 153509.05058878602 172258.84157167692 160041.6125774602 186812.79499809223 210745.70091981048 163126.07127058855 133303.7952424342 151457.65847881878 137103.32487109528 169560.76653536674 0.905333549295835 1.0159121422451662 0.9438599261349704 1.1017454026378626 1.2428918860534488 0.9620508010416664 0.7861712232506916 0.8932352782636658 0.808579293857453 1.0 17.37144286796577 2.4742253799189027 24.0825684121415 0.8648970183153344 1.044784436774034 0.3868388810339404 0.1006887972409843 56.66952391863468 471257.6670183953 0.03557158645758073 0.02993233248186145 298.0062550866572 -2.4742253799189027 0.1798874184586996 RPPS(ph)PDVIVLS(ph)DNEQPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9;C9JMI3;C9JGN4 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 RPPS(1)PDVIVLS(1)DNEQPS(0.265)S(0.735)PR;RPPS(1)PDVIVLS(1)DNEQPS(0.042)S(0.958)PR;RPPS(1)PDVIVLS(1)DNEQPS(0.244)S(0.756)PR 214.16 8.8688e-25 3930310000.0 1007090.0 1276850.0 1124140.0 1343740.0 1234770.0 1277210.0 1324660.0 1238680.0 1292700.0 1346510.0 True False 1001667.9393382177 1319349.1803778745 1282409.1407999601 1513857.3462232347 1392010.6404448207 1188919.4789289464 1260581.1351073883 1331116.5914895902 974131.4062925408 1260574.578994792 0.7946121998882195 1.0466252472185744 1.017321118614481 1.2009264437415639 1.1042667872573144 0.9431567943223281 1.00000520089228 1.0559602055048976 0.7727677699714786 1.0 20.265650043778525 1.2628750545924843 24.97778426864074 0.8863837034708569 1.0276520999278858 0.18434166258440576 0.11188858614357686 302.4198837643264 310671.5410054774 0.07362111943733148 0.026854343394261727 18.31787346038732 -1.2628750545924843 0.14126839645702882 RPPS(ph)PDVIVLS(ph)DNEQPSSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9;C9JMI3;C9JGN4 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 RPPS(1)PDVIVLS(1)DNEQPSSPR;RPPS(1)PDVIVLS(1)DNEQPSSPR 179.67 2.0083000000000003e-16 437590000.0 185428.0 230176.0 222235.0 267516.0 256653.0 226839.0 229085.0 205821.0 238330.0 215413.0 True False 184429.67625098763 237837.26901566974 253523.7562987519 301383.4981709662 289336.2382484867 211158.1538515696 218003.28336031587 221180.40815786115 179596.76495838293 201665.157915652 0.914534162257849 1.179367182084805 1.257151998486472 1.4944748080728065 1.4347358821869656 1.0470730592931086 1.0810161041874047 1.0967705598920143 0.8905691335808273 1.0 17.62160232266942 2.6385642674546848 9.519549810164449 1.0387015077087962 1.264974845937695 0.35815999380718244 0.15502351337078776 0.5076578422497835 45.0434221104905 0.054100522040542554 0.0509808017382205 435.07513884449475 -2.6385642674546848 0.22627333822889883 RPPS(ph)PDVIVLSDNEQPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9;C9JMI3;C9JGN4 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 RPPS(1)PDVIVLSDNEQPS(0.697)S(0.303)PR 185.22 1.3027e-16 647570000.0 166950.0 196160.0 195490.0 196180.0 195910.0 216740.0 169190.0 183180.0 235650.0 246780.0 True False 166051.1597498889 202689.0670187761 223013.2927704593 221016.3678852115 220857.97725045512 201757.2739510808 161005.63333143506 196849.82176919235 177577.21504822277 231030.28912101264 0.7187419467016813 0.8773268119515207 0.9652989381563121 0.9566553750423786 0.9559697911937889 0.873293604568885 0.6969027045934268 0.8520520080641171 0.7686317483471122 1.0 17.817722482355425 2.4644247657314287 24.991009576089205 0.8125960603955771 0.9025261690740618 0.07796900692592612 0.09804747926957018 426.33030575179635 839157.2272943674 0.03323870807960026 0.02782536240578986 291.35653644922724 -2.4644247657314287 0.08993010867848472 RPPS(ph)PDVIVLSDNEQPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JHD7;C9JJK9;C9JMI3;C9JGN4 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 RPPS(1)PDVIVLSDNEQPS(0.374)S(0.626)PR;RPPS(1)PDVIVLSDNEQPS(0.181)S(0.819)PR 192.03 4.3596e-17 1145170000.0 406440.0 554250.0 484160.0 506480.0 523590.0 561590.0 524900.0 505360.0 523910.0 542860.0 True False 404251.77219972946 572697.8761988004 552325.51960584 570600.3160694361 590266.0829389306 522768.6051406634 499508.5816872767 543072.5293660832 394799.4005343274 508214.21003417147 0.7954357910861017 1.1268828476092654 1.0867966867134677 1.1227555326150167 1.1614513551268906 1.0286383080581578 0.9828701595212983 1.0685898163484409 0.7768366030296195 1.0 18.95507718918113 1.2618644959472605 24.998932532079255 0.8884182533045221 1.053874290683171 0.2479053823644568 0.10968956726729633 251.89505504976927 270218.15932501183 0.0700731176567869 0.02555614058300314 18.275299202773517 -1.2618644959472605 0.165456037378649 RPPS(ph)PEPSTK ddPTM_BT-474_Trastuzumab_2h_R1 11 RPPSPEPSTK 10 1 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 1 RPPS(0.999)PEPS(0.001)TK;RPPS(0.987)PEPS(0.013)TK;RPPS(0.985)PEPS(0.012)T(0.004)K;RPPS(0.998)PEPS(0.001)TK;RPPS(0.999)PEPS(0.001)TK;RPPS(0.999)PEPS(0.001)TK;RPPS(0.995)PEPS(0.004)T(0.001)K;RPPS(0.999)PEPS(0.001)TK;RPPS(0.997)PEPS(0.002)T(0.001)K;RPPS(0.993)PEPS(0.006)T(0.001)K;RPPS(0.995)PEPS(0.005)TK 98.531 0.0032546 70227124000.0 8709683.0 8744167.0 7800785.0 7526382.0 7595554.0 9459607.0 9637725.0 8544513.0 11396195.0 9431499.0 True False 8662791.034464758 9035211.312634435 8899067.722361282 8479221.189502677 8562802.779524283 8805686.633609671 9171511.422065157 9182147.948217863 8587755.443439338 8829572.659107452 0.9811110196289439 1.0232897628759952 1.007870716504286 0.960320676534283 0.9697867733940665 0.9972947699260232 1.0387265359445232 1.0399311838435057 0.9726128064172295 1.0 23.07391218415084 2.427562729322749 9.062086682446148 1.0193901509694294 0.9892882054560795 0.15689460664391863 0.024794774971748087 0.4852581129103059 82.93679295577006 0.009081815232592083 0.007599185546414879 267.64721538578874 -2.427562729322749 -0.03010194551334988 RPPS(ph)PPGPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPSPPGPEER 11 1 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 RPPS(1)PPGPEER;RPPS(1)PPGPEER 84.566 0.0057206 569210000.0 344725.0 398725.0 356727.0 366401.0 393555.0 426872.0 377854.0 370340.0 481055.0 402703.0 True False 342869.0389025484 411996.32059064804 406951.06087333214 412787.32903205947 443671.89646675996 397363.34338860237 359575.7584775464 397976.651348416 362505.4410567486 377002.14976861625 0.9094617606636541 1.0928222049755136 1.0794396295169588 1.0949203586382896 1.1768418210322198 1.0540081631695808 0.9537764140025057 1.0556349654575519 0.961547411014062 1.0 18.52421322459303 2.462168750074152 22.400340602687585 1.0022896865258843 1.0779244651272235 0.22430980056198213 0.06748470711232205 107.8709640664892 161597.53602817154 0.023328409847163688 0.01953039762670621 289.84696023458093 -2.462168750074152 0.07563477860133916 RPPSAFFLFCSEHRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPSAFFLFCSEHRPK 16 2 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ; 152.68 3.1508000000000004e-07 6243600000.0 1201400.0 1585960.0 1626100.0 1590130.0 1216370.0 1793330.0 1827080.0 1541550.0 2288200.0 1710970.0 False True 1194931.7958880893 1638747.719866934 1855040.7456854256 1791440.2949603 1371267.5095101646 1669361.3181447398 1738697.1602766009 1656588.288832291 1724303.7703091148 1601774.4297648876 0.7460050389638724 1.0230827071621273 1.1581160937609132 1.1184098470239983 0.8560927706352777 1.0421950101861552 1.0854819055463454 1.034220710512559 1.0764960023504762 1.0 20.611239563529722 4.731839487902666 4.965517954788723 1.0472645404912084 0.7322061142902008 0.5773206289439152 0.076629343347515 0.11556382371614753 8.79314118205783 0.018734287697862482 0.12432995394144473 53931.126013743335 -4.731839487902666 -0.31505842620100766 RPPSAFFLFCSEYRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPSAFFLFCSEYRPK 16 2 P09429;Q5T7C4 P09429 HMGB1 High mobility group protein B1 0 ; 254.59 7.7888e-27 4230400000.0 2271170.0 2819400.0 2842500.0 2655700.0 2274800.0 2593600.0 3046100.0 2939300.0 4583700.0 2927300.0 False True 2258942.2730707075 2913242.024636712 3242699.2925470886 2991911.347704943 2564482.2962040487 2414310.5366776926 2898748.5057679825 3158645.491462978 3454108.55343322 2740477.207812379 0.824287925705442 1.063041873266388 1.1832608143220482 1.091748305432277 0.9357794653038474 0.8809817975479339 1.0577531889352751 1.1525895863897395 1.2604040433492625 1.0 21.385995705356184 1.8428746955883197 3.969503846896199 1.1534295111392527 1.0072937715156107 0.22405521112213433 0.1146271309703418 0.34924125450779675 8.911650099848071 0.059225712282643686 0.032413830950516566 69.64255495862994 -1.8428746955883197 -0.146135739623642 RPPSGFFLFCSEFRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPPSGFFLFCSEFRPK 16 2 O15347;E7ES08;E7EQU1;E9PES6 O15347 HMGB3 High mobility group protein B3 0 ; 119.46 0.00010844 478570000.0 142587.0 197943.0 167056.0 168527.0 156500.0 179541.0 204558.0 175888.0 228588.0 180659.0 False True 141819.32743490508 204531.41309592986 190576.0327232176 189862.5009205372 176429.3473518262 167129.75326405346 194662.74805255447 189013.655701167 172255.5503222707 169129.18795004862 0.8385266266210102 1.209320612101189 1.1268074720461803 1.1225886153761468 1.0431632144058638 0.9881780625199614 1.1509707485265468 1.1175696991875297 1.0184850551824645 1.0 17.367766132866038 1.1052584325314463 6.015975367026616 1.0011016584705024 1.0836860974570663 0.06194877094624318 0.09784488046803586 0.4916407253842692 22.572865544065255 0.08841043440742055 0.0222577756920007 12.742611209645004 -1.1052584325314463 0.08258443898656398 RPPT(ph)PCS(ph)DPER ddPTM_BT-474_Trastuzumab_2h_R1 3 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 RPPT(1)PCS(1)DPER;RPPT(1)PCS(1)DPER;RPPT(1)PCS(1)DPER 92.265 0.022429 1016320000.0 1001470.0 1142560.0 960010.0 1045420.0 1053070.0 1146530.0 1023450.0 977920.0 1177540.0 1046990.0 True False 996078.1967937768 1180589.4189078961 1095171.0634434933 1177770.064810673 1187172.2224650956 1067273.0797413143 973941.813541328 1050897.3561771417 887351.0452276013 980170.2018267646 1.016229829204524 1.2044738931132632 1.117327441093801 1.2015975007357265 1.2111898732001205 1.0888650540000238 0.9936456053511639 1.0721580335931058 0.9053030214281416 1.0 19.902672762451353 2.427974159296264 3.890551255924531 1.0070270661559368 1.1543673305155087 0.5537073392979874 0.06594957041041663 0.17274625113447623 5.504789637651338 0.023005413274168458 0.01933671700948603 267.9008917922993 -2.427974159296264 0.14734026435957182 RPPT(ph)PEAQS(ph)EEERS(ph)DEEPEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPPTPEAQSEEERSDEEPEAK 21 2 Q9BTK6 Q9BTK6 PAGR1 PAXIP1-associated glutamate-rich protein 1 3 RPPT(1)PEAQS(1)EEERS(1)DEEPEAK 73.753 0.02271 465780000.0 468470.0 375100.0 331180.0 301260.0 336470.0 443560.0 427670.0 414730.0 515940.0 423460.0 True False 465947.8095719102 387584.97674726136 377807.2653318361 339399.4851111162 379317.46008606296 412897.74122792843 406981.96824194555 445679.25855626824 388793.50024179905 396434.42025765433 1.1753465031343067 0.9776774087763583 0.9530132754019899 0.8561302141487375 0.9568227194791347 1.0415284852399398 1.026606034807563 1.1242193810179455 0.980725891533613 1.0 18.59672270381085 2.6828268108909916 6.383154644422667 1.0487723186123457 0.9747142443183587 0.0688569477545784 0.08267270239244084 0.4619495518625625 41.7839023402806 0.027837944639007028 0.026351844887298997 481.7556435164954 -2.6828268108909916 -0.07405807429398692 RPQGESYDQAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPQGESYDQAIR 12 1 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ; 139.48 9.4382e-05 490040000.0 244090.0 301550.0 320690.0 301700.0 282850.0 294010.0 295170.0 259020.0 314540.0 320870.0 False True 242775.8465609485 311586.90945917554 365840.364512551 339895.1890660023 318869.2709167031 273685.7807250956 280891.4994411 278349.38767690957 237025.83162006317 300391.80188937206 0.8081973110915913 1.037268352529562 1.2178773262503424 1.1315062093178512 1.0615112293714857 0.9110960385859275 0.9350837728405996 0.9266211192388658 0.7890555938252761 1.0 18.19648591466936 2.740747983726123 8.13180979308261 0.9112559784659388 1.0643445539931395 0.28640087139366754 0.10864811004702932 0.1511085110751934 113.58397760815387 0.03539842406447092 0.03556732666434405 550.488161524892 -2.740747983726123 0.1530885755272008 RPQGGSDAPSGHAAPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPQGGSDAPSGHAAPSR 17 1 Q96IQ9-2;M0R0Q5;M0R398 Q96IQ9-2 ZNF414 Zinc finger protein 414 0 ; 95.767 0.0016145 42201000.0 12248.2 17881.1 18952.4 18915.6 20182.1 19214.4 18647.8 17060.4 18724.7 17390.5 False True 12182.257052102956 18476.2616041468 21620.733182786087 21310.313020539845 22752.17080632134 17886.15375383243 17745.734672486164 18333.533678955846 14110.248583125207 16280.623401243889 0.7482672347283823 1.1348620472810125 1.3280040112674185 1.3089371638503517 1.3974999756202828 1.0986160242774163 1.089991103849889 1.1260953114089667 0.8666896982610102 1.0 13.990868322437626 1.4987128096758473 1.7252856030686143 0.939218627767803 1.1835594150867208 0.18554450007568957 0.1743699693933095 0.5615501561752698 3.233269831841506 0.15595590059652442 0.05140832681073441 31.529189710910995 -1.4987128096758473 0.24434078731891784 RPQHNSSGAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPQHNSSGASPR 12 1 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 RPQHNSSGAS(1)PR;RPQHNS(0.05)S(0.038)GAS(0.912)PR;RPQHNSS(0.007)GAS(0.992)PR 150.93 4.1975e-05 1388660000.0 131781.0 271222.0 289316.0 297376.0 338115.0 268310.0 300995.0 255145.0 204110.0 259826.0 True False 131071.50573824557 280249.4603128387 330049.1780202477 335023.77110935195 381171.94108538434 249762.36123380263 286434.72193743865 274185.2155000578 153809.82543387538 243243.68223176984 0.5388485511140911 1.1521345908824414 1.356866394193815 1.3773174622070197 1.5670373741595982 1.0267989653101106 1.1775628427813187 1.127203851645388 0.632328141157314 1.0 17.892042808811087 1.3744729671634675 5.972703987831311 0.8201543252339009 1.190235315779993 0.2103496457510945 0.2694237376136261 0.30563075777606546 14.271010648625609 0.1881449317169594 0.06787691176810076 23.684976990937958 -1.3744729671634675 0.3700809905460921 RPQS(ph)PGAS(ph)PSQAER ddPTM_BT-474_Trastuzumab_2h_R1 2 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 RPQS(1)PGAS(0.974)PS(0.026)QAER;RPQS(1)PGAS(0.881)PS(0.119)QAER 115.74 0.0014062 2235800000.0 789910.0 882960.0 831890.0 907750.0 870510.0 822150.0 833410.0 789900.0 808670.0 798490.0 True False 785657.2123272524 912348.7898394096 949012.881082498 1022671.0569262956 981364.2885829909 765316.7056329285 793094.7743646275 848846.3490309268 609384.1141228357 747529.6845783166 1.0510047005965302 1.220485030442728 1.269532034193182 1.368067486849284 1.312809790472175 1.0237944009737159 1.0609542212521157 1.1355353058785393 0.8151972111536825 1.0 19.51177134464201 2.729526384967477 24.597904188282488 1.0298173746560906 1.251321204846607 0.539047873428121 0.10860603338883898 458.8802126665182 1249410.814782818 0.036190331782629065 0.03459326759348387 536.4464615216391 -2.729526384967477 0.22150383019051634 RPQS(ph)PGASPS(ph)QAER ddPTM_BT-474_Trastuzumab_2h_R1 1 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 RPQS(0.998)PGAS(0.035)PS(0.967)QAER 154.52 4.074e-06 44819000.0 57361.0 63303.0 57666.0 61413.0 61336.0 62279.0 64875.0 58080.0 58147.0 61031.0 True False 57052.17474940621 65410.0020875284 65784.87155814274 69187.87950318327 69146.7760330454 57973.79931899674 61736.74840343315 62414.2245242641 43817.450979881156 57135.94932873207 0.9985337676137336 1.1448134293033534 1.1513744381781255 1.2109342772115386 1.210214879518479 1.014664147530727 1.0805237180576164 1.0923809835584148 0.7668980999646502 1.0 15.802111139126191 1.3460903792314203 6.647585591148836 0.8857284655857872 1.1177358913221307 0.5370443080812102 0.0853106998727218 0.14991223862386305 7.930457294324457 0.05804968101686265 0.02094410639834269 22.18658087534393 -1.3460903792314203 0.23200742573634348 RPQS(ph)PGASPSQAER ddPTM_BT-474_Trastuzumab_2h_R1 1 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 RPQS(1)PGASPSQAER 71.872 0.024627 262840000.0 53250.0 65195.0 51854.0 66652.0 63567.0 69442.0 54283.0 63736.0 59438.0 63832.0 True False 52963.30791663115 67364.97616379021 59154.59247695222 75090.13636601642 71661.88065887237 64641.637988884984 51657.12390880249 68492.30396485011 44790.30132839488 59758.18711067536 0.8862937528298888 1.1272928350223657 0.9898993817766718 1.256566505723232 1.1991977020010787 1.081720197923093 0.8644359276349989 1.1461576610080004 0.7495257720158218 1.0 15.86684876117542 2.408599051788114 11.004923270624296 0.9700351429341851 1.1016093781031422 0.21335435886433196 0.1359147938346993 0.8929386934345295 139.03134096099495 0.04646574760362886 0.03886371380744459 256.2117552852872 -2.408599051788114 0.13157423516895705 RPQS(ph)PSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPQSPSPR 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 RPQS(0.869)PS(0.131)PR;RPQS(0.988)PS(0.012)PR;RPQS(0.997)PS(0.003)PR;RPQS(0.982)PS(0.018)PR 110.66 0.002072 439500000.0 195894.0 335785.0 347628.0 456373.0 412511.0 247702.0 273598.0 217022.0 176094.0 247750.0 True False 194839.32846986948 346961.400738681 396571.00076325756 514149.77500702156 465041.83070574485 230578.94376778876 260363.0194941427 233217.28365538645 132697.9932387088 231938.38289055385 0.8400478008066887 1.4959205820728851 1.7098118725368103 2.21675157254863 2.0050231656792525 0.9941387919247218 1.1225525342090608 1.005513967756842 0.5721260603137247 1.0 17.8233820620951 2.7138435885952927 19.318239916084202 0.9600313711646551 1.679174053704389 0.491442310709178 0.36270288432880354 41.54929645287948 32473.00365914718 0.12591635535379664 0.1188852978723943 517.420449120554 -2.7138435885952927 0.719142682539734 RPQYS(ph)NPPVQGEVMEGADNQGAGEQGRPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR;RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR;RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR;RPQY(0.003)S(0.997)NPPVQGEVMEGADNQGAGEQGRPVR 261.73 1.2293e-58 2524110000.0 320866.0 327063.0 304593.0 364258.0 335483.0 339840.0 327654.0 324512.0 415297.0 366256.0 True False 319138.493107564 337949.0942412417 347477.0468301829 410373.0254517855 378204.7714864704 316347.6606973112 311804.12426016916 348728.73327854706 312952.6190446925 342881.22851246246 0.930755219502967 0.9856156188759062 1.0134035284977796 1.1968372466236363 1.1030197632202081 0.9226158634280942 0.9093648130371075 1.0170540241921469 0.9127143541872775 1.0 18.387349398619154 2.7303945320903114 24.605133136340346 0.9551071901887205 1.0491528075187069 0.28444676627849896 0.07405626313164534 730.9506580326731 2202413.760380604 0.02591506819550592 0.024815902645306545 537.5198811928861 -2.7303945320903114 0.0940456173299864 RPQYSNPPVQGEVMEGADNQGAGEQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPQYSNPPVQGEVMEGADNQGAGEQGR 27 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ; 285.53 2.9416999999999985e-61 2151900000.0 709690.0 693530.0 692300.0 700700.0 742540.0 698680.0 745450.0 702940.0 625530.0 748290.0 False True 705869.1078939717 716613.7268022619 789769.8224205282 789408.5481556101 837098.0676206059 650381.8961158107 709389.7356044586 755396.9522569939 471376.51317256363 700533.491556699 1.0076165042807819 1.0229542704801022 1.1273833898583943 1.1268676768064525 1.1949436789388017 0.9284094250377047 1.0126421422451617 1.0783166848716674 0.6728821945758633 1.0 19.418094500036133 1.2658355056309754 24.978011283250407 0.8364410117058577 1.0635750021285895 0.43822620851633753 0.10232345181721185 159.24935030637874 145838.93861329876 0.06577802081492834 0.024007372163068908 18.44316729256032 -1.2658355056309754 0.22713399042273175 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR ddPTM_BT-474_Trastuzumab_2h_R1 10 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ;;;;;;;;; 320.77 6.330099999999997e-93 18240310000.0 2590526.0 3300407.0 2975300.0 3489331.0 3492244.0 3329325.0 3256760.0 3085270.0 3526667.0 3610875.0 False True 2576578.895850495 3410259.051856834 3394196.378228796 3931079.9468308347 3936960.5732481205 3099176.5991380475 3099218.076768627 3315508.514083616 2657567.1727666906 3380425.866074384 0.7622054137346371 1.008825274377957 1.0040736027648502 1.1628948844235159 1.1646344955406545 0.9168006404876599 0.9168129104300348 0.9807961024549385 0.7861634237975069 1.0 21.688773578012473 RPRPPNAPS(ph)QDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPRPPNAPSQDGK 13 2 P16989;P16989-2 P16989;P16989-2 YBX3 Y-box-binding protein 3 1 RPRPPNAPS(1)QDGK;RPRPPNAPS(1)QDGK;RPRPPNAPS(1)QDGK;RPRPPNAPS(1)QDGK 169.02 1.5246e-05 479254000.0 389629.0 298252.0 260345.0 345721.0 246214.0 327437.0 274183.0 315493.0 561246.0 453933.0 True False 387531.2807558519 308179.1375228591 296999.31304069393 389489.243152427 277567.8934752876 304802.05089378974 260919.72080922534 339036.68970099295 422934.4436110956 424962.6073084067 0.9119185408108392 0.7251911867605926 0.6988834027581952 0.9165259165255552 0.6531583925308732 0.7172444013940896 0.6139827747712141 0.7978035805276039 0.9952274302199036 1.0 18.69697637774824 1.286498153995023 4.210572848210883 1.00362626073872 0.7445413158978552 0.5264475859071449 0.0930830817027103 0.15137700507365529 4.970062346470159 0.0729146866565102 0.023056082107357746 19.3418563718417 -1.286498153995023 -0.25908494484086486 RPRPPNAPSQDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPRPPNAPSQDGK 13 2 P16989;P16989-2 P16989;P16989-2 YBX3 Y-box-binding protein 3 0 72.49600000000002 0.022155 375600000.0 160320.0 151640.0 161910.0 154740.0 164090.0 155830.0 169990.0 159720.0 176940.0 158020.0 False True 159456.8549332264 156687.24573168435 184705.52065305176 174330.06813415047 184985.88886237156 145057.83888436318 161766.9342751382 171639.11744172618 133335.507874528 147935.02831227158 1.07788437094583 1.0591625764314452 1.2485583891812455 1.178423191065759 1.2504536009679226 0.9805509928193948 1.0934998703192138 1.1602331063838265 0.9013112674915241 1.0 17.174604171153913 2.733603269321106 24.99815085770878 1.052645462517701 1.1627550298230327 0.35638979203569754 0.0879480314028018 601.2207892853709 3031735.6253342414 0.02931640155917083 0.028457202448318505 541.5059953357364 -2.733603269321106 0.11010956730533161 RPRPTPGDGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPRPTPGDGEK 11 2 I3L4Q4;Q9BUL5-4;Q9BUL5;I3L410;I3L1N0;Q9BUL5-3 I3L4Q4 PHF23 PHD finger protein 23 0 ; 97.163 0.00364 137984000.0 82288.0 111010.0 85806.0 92967.0 106142.0 103603.0 109469.0 110014.0 138710.0 107829.0 False True 81844.9705510563 114704.90074303804 97886.73896087782 104736.61266787865 119658.55454707681 96441.16846522928 104173.56625781 118223.80331977276 104526.77911877343 100947.26090294849 0.8107696020572834 1.1362854199017471 0.9696819714106648 1.0375379354628878 1.1853571209041274 0.9553619147521852 1.0319603060648006 1.1711442416791684 1.0354592901660433 1.0 16.62324223963473 4.748949418931562 24.329768039659545 1.0644736644101684 0.8107693940369605 0.4817713170190947 0.07669454834806626 855.136847334084 2002605.632606928 0.018023243799608457 0.2494816410310529 56098.26361427359 -4.748949418931562 -0.253704270373208 RPS(ph)ADSESPGTPSPDGAAWEPPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPSADSESPGTPSPDGAAWEPPAR 24 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 RPS(0.978)ADS(0.006)ES(0.017)PGTPSPDGAAWEPPAR;RPS(0.979)ADS(0.006)ES(0.015)PGTPSPDGAAWEPPAR;RPS(0.983)ADS(0.009)ES(0.009)PGTPSPDGAAWEPPAR 245.98 4.6942e-38 1119570000.0 216746.0 256584.0 213325.0 239730.0 258294.0 253502.0 209514.0 159592.0 232657.0 204005.0 True False 215579.06361874458 265124.24333169666 243359.30574586036 270079.7934199292 291186.2098715178 235978.00341952022 199379.00739879586 171501.5654317555 175321.79979407744 190985.2262425324 1.1287735070406988 1.3881924196325794 1.274231051970575 1.4141397150633763 1.5246530613930316 1.2355825006058396 1.0439498977036274 0.897983413722093 0.9179861879548528 1.0 17.54310151661935 2.2294598071828293 2.6849258067269357 0.9352187893130415 1.3499050082253778 0.7662729585054336 0.1003178325505665 0.12284813032838447 1.81706730912519 0.04295822112410827 0.030476806574607822 169.6132622363003 -2.2294598071828293 0.41468621891233637 RPS(ph)ASSPNNNTAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 RPS(0.333)AS(0.333)S(0.333)PNNNTAAK;RPS(0.55)AS(0.328)S(0.122)PNNNTAAK 123.14 6.4094e-05 296160000.0 142987.0 148492.0 146220.0 124080.0 127024.0 188428.0 170320.0 164687.0 240030.0 174495.0 True False 142217.1738793492 153434.4664546906 166806.50503297636 139788.51527779087 143199.7534697657 175402.41587180138 162080.97091441567 176976.7802036412 180877.82273721567 163358.5797073144 0.8705828254270834 0.9392495131238006 1.021106484470173 0.8557157850432254 0.8765976891225011 1.0737263765763978 0.9921791142210724 1.0833638522122693 1.1072440949308575 1.0 17.317682702559228 2.7333400899442184 24.94967533063201 1.0536788163073065 0.9169904807956022 0.6175269870423383 0.05448983541104689 298.19149322495775 1425097.65875513 0.017875602902909432 0.017309909437612056 541.1779459496781 -2.7333400899442184 -0.13668833551170434 RPS(ph)DSSRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSDSSRPK 9 2 Q13573;G3V4X8 Q13573 SNW1 SNW domain-containing protein 1 1 RPS(0.988)DS(0.006)S(0.006)RPK;RPS(0.94)DS(0.024)S(0.036)RPK 74.76 0.031643 110336000.0 110350.0 104318.0 91293.0 93810.0 100264.0 103020.0 105986.0 96939.0 145513.0 112788.0 True False 109755.88786103761 107790.16156843741 104146.260867019 105686.33638144401 113032.02608871239 95898.46988299502 100859.05227416207 104173.08042626796 109653.27092430295 105589.77327733504 1.0394556636915975 1.0208390284665445 0.9863290509534042 1.0009145118993232 1.0704827047201817 0.9082174050238228 0.9551971667677742 0.9865830486504967 1.0384838182793992 1.0 16.68811058605989 2.7528390621863306 24.981644613327717 0.9758165332190993 1.0201191873012838 0.2698479987546777 0.037475652032889446 1188.9189334998796 2080138.009752902 0.011792203412976286 0.012455206614086238 566.0294949145845 -2.7528390621863306 0.04430265408218448 RPS(ph)EEDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSEEDFR 8 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 RPS(1)EEDFR 105.94 0.0045464 262700000.0 172270.0 211060.0 169510.0 196860.0 204390.0 201010.0 191930.0 176010.0 202540.0 182390.0 True False 171342.51746099626 218085.00451153558 193375.53459266727 221782.45581548946 230417.8549855573 187114.65182664362 182645.61265619926 189144.75996067037 152626.7308969531 170749.71404806484 1.003471768115316 1.2772203205572936 1.1325086877640886 1.2988745372250479 1.3494479699140012 1.0958416701885203 1.0696686297511795 1.1077310495959451 0.8938622928176017 1.0 17.381523636894876 1.8529438747487617 1.1887061700569275 0.9696873252188702 1.2091859119157717 0.43931402857679314 0.10370661458134466 0.4361384327323576 1.1405161212130968 0.08269962643725665 0.03470338538813965 71.27609118244415 -1.8529438747487617 0.2394985866969015 RPS(ph)LGELLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSLGELLLR 10 1 Q8N612;Q8N612-2 Q8N612 FAM160A2 FTS and Hook-interacting protein 1 RPS(1)LGELLLR;RPS(1)LGELLLR 190.87 5.2303e-07 391700000.0 141129.0 135034.0 124328.0 141924.0 112160.0 128692.0 127952.0 110754.0 158917.0 167515.0 True False 140369.17714490584 139528.52506022342 141832.30172165157 159891.56384820424 126442.91117559634 119795.82494838268 121762.47293589331 119019.02587741647 119754.03472870098 156824.049283193 0.8950743064377013 0.8897138270435977 0.9044040271242499 1.0195602305834606 0.8062724547257777 0.7638868240932568 0.7764272985708623 0.7589335081030322 0.7636203457063467 1.0 17.258787291039994 3.1027120283420038 8.795517479877883 0.7910751525353386 0.9226487053122728 0.33901664291171685 0.07614021593548966 0.2490842972361835 19.346313670813824 0.02064412358479883 0.024705140123528514 1266.8115908285465 -3.1027120283420038 0.13157355277693428 RPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_BT-474_Trastuzumab_2h_R1 4 RPSPPEPWDEEDGASCSTFFGSEER 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER 198.74 4.5831999999999995e-25 962498000.0 159548.0 200450.0 168546.0 190933.0 177714.0 195295.0 179016.0 161466.0 176005.0 169313.0 True False 158689.0112954492 207121.85707541605 192275.81177190566 215105.09822319853 200344.82450659713 181794.71632498043 170356.3121724701 173515.41282773457 132630.9260961699 158507.29938384777 1.0011463945970172 1.3067023277826548 1.2130407402013876 1.3570674603589783 1.2639469935162664 1.1469170002369349 1.074753735851169 1.0946840524204664 0.8367496425195247 1.0 17.274189753554804 1.8632064036076663 1.190006762437374 0.9407398094299124 1.2341966737664065 0.5366238555588546 0.10361739115527616 0.3491249804759834 0.914358481375039 0.08082101197638869 0.03414115231665701 72.98042759908283 -1.8632064036076663 0.2934568643364941 RPS(ph)PPPQPS(ph)SVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSPPPQPSSVK 12 1 H0YAU4;H3BLZ3;Q8IX03-2 H0YAU4 WWC1 Protein KIBRA 2 RPS(0.989)PPPQPS(0.993)S(0.018)VK;RPS(0.996)PPPQPS(0.996)S(0.007)VK 70.438 0.0316 874670000.0 1665490.0 1447230.0 1323960.0 1264520.0 1231700.0 1668410.0 1660880.0 1567270.0 2215710.0 1646520.0 True False 1656523.1868933334 1495400.1756809896 1510362.059933385 1424608.1023458433 1388549.694142136 1553076.7437146902 1580536.8892222582 1684227.6458358034 1669677.9594928804 1541437.6839433077 1.0746611453377821 0.9701333964117544 0.9798398441055204 0.9242073923490758 0.900814680091346 1.0075507819048561 1.0253654141755033 1.092634274729297 1.0831952383709138 1.0 20.55584513578308 2.2102345115436357 2.555739348558057 1.0662447306912792 0.9679065031324399 0.36323381939812316 0.049395231609995385 0.2685997056623819 3.5773586986591397 0.022159829923043696 0.015252895224008908 162.26860833786492 -2.2102345115436357 -0.09833822755883936 RPS(ph)PQPSPR ddPTM_BT-474_Trastuzumab_2h_R1 7 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RPS(1)PQPSPR;RPS(1)PQPSPR;RPS(0.999)PQPS(0.001)PR;RPS(1)PQPSPR;RPS(1)PQPSPR;RPS(1)PQPSPR;RPS(1)PQPSPR 125.54 0.00030544 3678200000.0 1140929.0 1267021.0 1131998.0 1085885.0 1098126.0 1205190.0 1243605.0 1111944.0 1384177.0 1125667.0 True False 1134786.3650331278 1309193.028054633 1291373.4788969983 1223357.9296617026 1237965.8369972599 1121878.0520121024 1183447.0751175554 1194922.9076172228 1043065.1253715412 1053825.968327995 1.0768252056206065 1.242323749273141 1.2254143641439177 1.1608728257120935 1.174734609132305 1.0645762068210174 1.1230004864989407 1.1338901711760747 0.9897887855491672 1.0 20.0072052054069 1.6107445253075123 0.5466393366231053 0.9919081910761165 1.1868269736207655 0.5508670224525205 0.05494900866687383 0.6018288338878208 0.42206384619196546 0.05473101336069997 0.032102502524972 40.80792621815078 -1.6107445253075123 0.194918782544649 RPS(ph)PTSGDSRPAAGR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPSPTSGDSRPAAGR 15 2 Q8N1G1 Q8N1G1 REXO1 RNA exonuclease 1 homolog 1 RPS(0.894)PT(0.042)S(0.063)GDS(0.001)RPAAGR;RPS(0.959)PT(0.026)S(0.014)GDSRPAAGR;RPS(0.904)PT(0.035)S(0.062)GDSRPAAGR;RPS(0.872)PT(0.051)S(0.077)GDSRPAAGR;RPS(0.861)PT(0.069)S(0.069)GDSRPAAGR 127.37 6.188899999999999e-05 1395667000.0 221086.0 243403.0 252734.0 270981.0 244571.0 250538.0 255438.0 219602.0 248900.0 262410.0 True False 219895.697540964 251504.5217147793 288316.7503966915 305287.16681569174 275715.6671641116 233218.8977630147 243081.48807207946 235989.81635636115 187561.93008912605 245662.76913949603 0.8951120200721153 1.0237795600682418 1.173628187155112 1.242708318745438 1.1223339545096087 0.9493457172201163 0.9894925833635343 0.9606250763311952 0.7634935108242704 1.0 17.906319704347837 2.711763955719904 7.414961595700488 0.9370872395723002 1.100744939422983 0.3592913724657043 0.10567545743934981 0.2601139922776172 58.50771664998677 0.03626739484330327 0.03476590881744833 514.9486876966067 -2.711763955719904 0.16365769985068268 RPS(ph)QEQSASASSGQPQAPLNR ddPTM_BT-474_Trastuzumab_2h_R1 7 RPSQEQSASASSGQPQAPLNR 21 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR 351.04 1.3798999999999995e-95 9076290000.0 1031646.0 1182349.0 1136844.0 1196148.0 1158233.0 1243454.0 1217833.0 1045954.0 1166867.0 1167982.0 True False 1026091.7325626458 1221702.7717199372 1296901.7535748105 1347580.2141561813 1305727.1071651587 1157496.9517558673 1158921.7652161564 1124008.398726792 879308.2630667273 1093440.388800301 0.938406650305328 1.1173016693304727 1.1860744919050805 1.2324222042270792 1.194145671350017 1.0585825835698714 1.059885639022078 1.0279558083271734 0.8041666213111858 1.0 20.06044314030332 1.6952949469312146 1.5987743948297064 0.9101624644630769 1.1315547513942215 0.44460734713274463 0.09179895916197398 0.3267888147472886 1.6507469718028986 0.07378041485069418 0.028075950503653833 49.57867853335763 -1.6952949469312146 0.22139228693114454 RPS(ph)QGPPAR ddPTM_BT-474_Trastuzumab_2h_R1 9 RPSQGPPAR 9 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR 127.56 0.00027075 6344245900.0 1560029.0 1550852.0 1720472.0 1722545.4 1814311.5 1910737.0 1670366.0 1657562.0 2092840.0 1664813.0 True False 1551629.9771995163 1602471.1713101687 1962699.5029892977 1940619.4710234397 2045353.3152582264 1778652.2485810933 1589564.0151622198 1781257.6933692896 1577087.6246192323 1558563.2090218815 0.9955515234914878 1.0281720767140672 1.2593005478558954 1.2451336332013945 1.3123326044259978 1.1412127774383527 1.0198906312948282 1.1428844740196107 1.0118855722309628 1.0 20.57178523535143 2.414193400589131 6.804883868636428 1.0647632347031522 1.1751762213756718 0.24889121185386076 0.09989932654319476 0.36872058123119383 31.8117291134771 0.038001172684977706 0.03176024164540637 259.5334862745263 -2.414193400589131 0.11041298667251964 RPS(ph)QNAISFFNVGHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSQNAISFFNVGHSK 16 1 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 RPS(0.992)QNAIS(0.008)FFNVGHSK;RPS(1)QNAISFFNVGHSK 192.58 3.1351e-10 2187900000.0 858380.0 656190.0 631420.0 648740.0 560210.0 729920.0 705900.0 646950.0 961760.0 963330.0 True False 853758.5774549845 678030.887474768 720318.447598974 730870.4174831901 631549.422875185 679462.3484468606 671752.9202001307 695228.6941455348 724747.1349237369 901849.4546516933 0.9466752716335763 0.751822694993626 0.7987125166884653 0.8104128840056374 0.7002825356468149 0.7534099454650979 0.7448614807441125 0.7708921822368254 0.8036231891980732 1.0 19.782527099542495 0.7643666743338859 3.78872675033469 0.999995627602268 0.7789686718711041 0.5167976864212191 0.06190480542656982 1.970353234141082 30.92502760022158 0.0570272586952659 0.014621509472792784 5.812549633086432 -0.7643666743338859 -0.22102695573116393 RPS(ph)RHDNSAIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSRHDNSAIGR 12 2 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 RPS(1)RHDNSAIGR;RPS(1)RHDNSAIGR 123.72 0.00017519 64952000.0 12285.4 18581.2 18990.0 25136.0 22232.1 16024.9 16308.3 10729.3 12383.6 18659.9 True False 12219.25677143626 19199.664009427404 21663.62693596102 28318.21502274784 25063.22615501936 14917.136381557035 15519.40522524406 11529.974848281452 9331.82771173847 17469.009206455867 0.6994819584227191 1.0990700034854841 1.2401176666593652 1.6210544449356938 1.4347251099825953 0.8539200022886382 0.888396419157458 0.6600245447246328 0.5341933020614466 1.0 14.092510164480249 2.581172714153066 4.75486474122605 0.7519855571653871 1.2343772755655118 0.4246856094419895 0.2514195712469401 0.2240869431386163 8.078551029586885 0.08956126142417883 0.08346811749827936 381.21739923107117 -2.581172714153066 0.48239171840012474 RPS(ph)TFGIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSTFGIPR 9 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 RPS(0.967)T(0.033)FGIPR;RPS(0.957)T(0.043)FGIPR 77.67399999999998 0.019559 224662000.0 68029.0 77763.0 74730.0 89389.0 78601.0 78262.0 80453.0 548270.0 89889.0 335800.0 True False 67662.73942273243 80351.2944462738 85251.33443519581 100705.63823473941 88610.37144537305 72851.93214893168 76561.1810296941 589184.6914586488 67737.0604008898 314368.9565071561 0.21523352742748375 0.25559551216198007 0.2711824201167751 0.3203421843990089 0.28186743509884693 0.2317402232025837 0.24353925362204557 1.874182164819563 0.21546994065028768 1.0 18.262099234958278 1.7831764695688033 24.999999996178726 1.1201640452111326 0.262277731547228 0.4641775710134137 0.3753438831329825 58.69441937268043 32899.81463610881 0.15956970049718464 0.08896227640512767 60.69829186177898 -1.7831764695688033 -0.8578863136639046 RPS(ph)TS(ph)SASGQWSPTPEWVLSWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSTSSASGQWSPTPEWVLSWK 22 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 2 RPS(0.803)T(0.232)S(0.882)S(0.082)AS(0.001)GQWSPTPEWVLSWK 217.84 4.3008999999999995e-25 379240000.0 290820.0 247190.0 225110.0 215860.0 192760.0 242710.0 245100.0 246040.0 318830.0 250810.0 True False 289254.2574331396 255417.56972048947 256803.53130880411 243187.85386737547 217306.84342196782 225932.0289778846 233243.57662707422 264400.754165805 240258.61860311832 234803.0910707556 1.231901403486957 1.087794749872019 1.093697404653923 1.0357097632675254 0.9254854458303726 0.9622191426338685 0.9933582030944753 1.1260531237475508 1.0232344791863015 1.0 17.841091875402224 4.908068694349723 1.0736780691308745 1.0174801584795654 1.3918321488318246 0.6205003309968342 0.05227456948753245 1.8921089059772325 1.4100282177821282 0.018069988672652457 0.8765804047855115 80922.38877089809 -4.908068694349723 0.3743519903522592 RPS(ph)TSQTVSTPAPVPVIESTEAIEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPSTSQTVSTPAPVPVIESTEAIEAK 26 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 RPS(0.638)T(0.134)S(0.212)QT(0.015)VSTPAPVPVIESTEAIEAK;RPS(0.458)T(0.086)S(0.123)QT(0.253)VS(0.067)T(0.013)PAPVPVIESTEAIEAK;RPS(0.496)T(0.09)S(0.131)QT(0.282)VSTPAPVPVIESTEAIEAK 219.93 1.9081999999999997e-34 528940000.0 200150.0 175465.0 160159.0 155066.0 184261.0 223412.0 191428.0 176197.0 276598.0 218056.0 True False 199072.41463875544 181305.24645416762 182707.99507301647 174697.33970072493 207725.54614948758 207968.05429527914 182167.89631402536 189345.7148502368 208434.12912331114 204139.47939286625 0.9751784183579735 0.8881439640847022 0.8950154845912734 0.8557743961153151 1.0175667478298989 1.018754701020104 0.8923697506029366 0.9275310949815893 1.021037820529462 1.0 17.639195692654578 3.240112541329177 24.999687615096274 0.9685416981529815 0.9018211650692979 0.3546815130168691 0.048876673776323605 55.49317079211347 893917.945432831 0.014689702188070726 0.01888406233183568 1738.2512138351553 -3.240112541329177 -0.06672053308368364 RPS(ph)TSSASGQWSPTPEWVLSWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSTSSASGQWSPTPEWVLSWK 22 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 1 RPS(0.898)T(0.036)S(0.06)S(0.002)AS(0.005)GQWSPTPEWVLSWK 208.58 4.1152e-23 3049700000.0 549080.0 498120.0 489590.0 492670.0 428900.0 492250.0 600110.0 514530.0 594110.0 547200.0 True False 546123.8142885236 514699.6230801009 558520.0164074327 555041.9714854062 483517.87271053164 458221.91613186005 571080.3866571755 552926.8413304004 447699.55116613384 512277.2275185098 1.0660708400683123 1.004728680939665 1.0902690699583208 1.0834796896478307 0.9438597828224972 0.8944803546148329 1.1147877672086077 1.0793508116860844 0.8739399823310658 1.0 18.966565234907144 3.258595509440926 24.97181832203752 0.9992861245267189 1.0591887583610042 0.19120787717232568 0.07354508005606089 546.0834118357988 680643.5375806909 0.022029072098593516 0.029789244673202927 1813.8255260092906 -3.258595509440926 0.05990263383428529 RPS(ph)VGSQSNQAGQGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPSVGSQSNQAGQGK 15 1 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y3N9 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 RPS(1)VGSQSNQAGQGK;RPS(0.997)VGS(0.003)QSNQAGQGK;RPS(1)VGSQSNQAGQGK;RPS(1)VGSQSNQAGQGK 239.06 5.287e-18 2326250000.0 1818250.0 1645400.0 1849570.0 1689070.0 1501350.0 2141210.0 2041130.0 1822280.0 2452060.0 1972080.0 True False 1808460.7440265657 1700166.1443346958 2109973.379249364 1902906.0888157496 1692538.0233013658 1993193.1925661755 1942392.7440261962 1958267.786950344 1847782.6689206238 1846220.1660173668 0.9795477144677414 0.9208902468020723 1.1428611917943465 1.0307037718695624 0.9167584963349624 1.0796075296186673 1.0520916084544192 1.0606902811459828 1.0008463253364996 1.0 20.816143177281575 RPS(ph)VSK ddPTM_BT-474_Trastuzumab_2h_R1 3 RPSVSK 6 1 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5;A0FGR8-4 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 RPS(0.999)VS(0.001)K;RPS(0.996)VS(0.004)K;RPS(0.999)VS(0.001)K 94.309 0.027335 2617270000.0 1737970.0 2097550.0 2313660.0 1778220.0 2543370.0 3164010.0 2718180.0 2185840.0 3168310.0 2398610.0 True False 1728612.962626621 2167365.683754251 2639403.2173067685 2003342.4696749947 2867253.0937649477 2945289.435978399 2586691.248944031 2348958.48027062 2387522.453678903 2245528.6562466617 0.7698022280044954 0.9651917278922381 1.1754039343761737 0.8921473632064556 1.2768721903364533 1.3116240702540702 1.1519297434696796 1.0460603447371892 1.063234017093142 1.0 21.09862370246867 4.879577988000501 1.2689005749462967 1.125202062007223 0.5098899420780527 0.43958270222512497 0.12001761642115186 1.7936294815880758 1.9942051737388131 0.034595960253377335 1.5601480634899396 75784.08091586755 -4.879577988000501 -0.6153121199291702 RPSASS(ph)PNNNTAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 RPS(0.114)AS(0.114)S(0.773)PNNNTAAK;RPS(0.172)AS(0.172)S(0.656)PNNNTAAK 137.27 1.3615e-05 400680000.0 241460.0 225310.0 240350.0 211514.0 196460.0 289140.0 277770.0 275480.0 367510.0 290840.0 True False 240160.00618872792 232809.3071472291 274189.19084034936 238291.6507129807 221478.01649034984 269152.4323623487 264333.2039155549 296037.71645909606 276942.08488169895 272278.3421993485 0.8820385942150876 0.8550415918750447 1.0070179971920126 0.8751766621912057 0.8134250219879581 0.9885194326814611 0.9708197933790248 1.0872613446513206 1.0171285848322666 1.0 18.054722705278873 2.36490505616312 2.2732188551222774 1.0363999356976743 0.891934931373006 0.5556418390599356 0.05533238672691271 0.21645679078917704 2.2934260323463183 0.023267407300476786 0.01774362452596258 231.68880851827825 -2.36490505616312 -0.14446500432466836 RPSDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSDIK 6 1 Q9NSD9;Q9NSD9-2 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit 0 97.602 0.065557 364880000.0 467770.0 511850.0 399700.0 453400.0 479260.0 446830.0 505720.0 490970.0 677920.0 579590.0 False True 465251.5782941327 528886.617830141 455974.2857453195 510800.39351185097 540290.9202034258 415941.6938246809 481256.39156199165 527608.6744951434 510855.6996625976 542600.0699880366 0.8574484303040925 0.9747264091613589 0.8403505840966311 0.9413938953659059 0.9957442877133028 0.7665713972979245 0.8869449492931368 0.9723711876903668 0.9414958233858338 1.0 19.04952970814466 1.7194784400346932 6.604027750689518 0.967253744156152 0.8964863259507789 0.22737996419424078 0.06437152252766354 0.21692568608440485 24.118979277560012 0.031922490288811445 0.01653344577914478 52.41775782718281 -1.7194784400346932 -0.07076741820537302 RPSDSSRPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPSDSSRPK 9 2 Q13573;G3V4X8 Q13573 SNW1 SNW domain-containing protein 1 0 ;;; 128.03 0.0002411 298017000.0 425440.0 465930.0 467760.0 434520.0 433381.0 459180.0 482660.0 438920.0 597200.0 463330.0 False True 423149.4783108275 481438.1983893668 533616.5421571942 489530.18744766124 488569.5014995634 427437.9673934537 459311.89185974636 471674.4391905996 450028.0620700125 433759.88272323005 0.9755385298755884 1.1099186844269757 1.2302118370353763 1.1285741419291573 1.1263593544710215 0.9854253111419937 1.058908188964124 1.0874090896311905 1.0375050344551175 1.0 18.726537102659975 2.7708005760341052 24.434796206709112 1.0452570980200175 1.121139590302596 0.2708241647248326 0.06399698308137527 743.2648666778795 563322.3407044993 0.02032544820770487 0.02155630997436366 589.9301275677991 -2.7708005760341052 0.07588249228257848 RPSGPDGAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSGPDGAAR 10 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C528 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 0 76.655 0.056675 27043000.0 40010.0 52566.0 49555.0 50729.0 50333.0 47715.0 46263.0 41078.0 60880.0 41276.0 False True 39794.59060552887 54315.627533181985 56531.91326021845 57151.286198638416 56742.609202935855 44416.57435902836 44025.08194817765 44143.44894985745 45876.93975020491 38641.730341838535 1.0298345921233787 1.4056209971108065 1.4629757197754079 1.479004322349381 1.4684282691528172 1.149445792569419 1.1393144550908063 1.1423776461185549 1.1872382355645343 1.0 15.237872077752545 2.7176850670581327 17.96520846689405 1.1344453380282271 1.3825102988958478 0.46851555938800193 0.1300985110326365 20.476494194589925 17620.7643519511 0.04238927551664326 0.04010943424970529 522.0175055520077 -2.7176850670581327 0.24806496086762064 RPSS(ph)EDFVFL ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSSEDFVFL 10 1 Q86TL0;K7EQ67;K7EN30;Q86TL0-2 Q86TL0 ATG4D Cysteine protease ATG4D;Cysteine protease ATG4D, mitochondrial 1 RPS(0.397)S(0.603)EDFVFL;RPS(0.381)S(0.619)EDFVFL 71.555 0.053634 49563000.0 112187.0 107618.0 95989.0 111474.0 117775.0 105616.0 72471.0 68307.0 103225.0 87196.0 True False 111582.99765714743 111200.0000735452 109503.4168486552 125586.59697031335 132772.94814288392 98315.01451332154 68965.30086389527 73404.41519591786 77786.58189413443 81631.07662774865 1.3669181182796906 1.3622263072755463 1.341442761413145 1.5384655226710926 1.6265000245966466 1.204382185986036 0.8448412505740744 0.8992214512942693 0.9529040300283462 1.0 16.31683086460867 2.4405200352449525 4.155195243438327 0.9148778411299083 1.441314761950909 0.8808717143106365 0.09043007670243636 0.07049195628014973 2.7021522061208625 0.034834791970451695 0.02950999678726733 275.75286620857463 -2.4405200352449525 0.5264369208210007 RPSS(ph)MYSTGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPSSMYSTGGK 11 1 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 1 RPS(0.47)S(0.53)MYSTGGK;RPS(0.296)S(0.704)MYSTGGK 134.91 8.0221e-05 918980000.0 1519580.0 726320.0 747400.0 898260.0 638180.0 828490.0 786560.0 914660.0 1450120.0 987010.0 True False 1511398.7501212081 750495.1221302887 852627.4234827415 1011979.623899327 719448.4402107884 771218.4363556834 748511.0878490071 982916.5737493694 1092757.3566124695 924018.1767782263 1.635680756184907 0.812208180521989 0.9227387998530473 1.0951944986924347 0.7786085363810579 0.8346355685823089 0.8100609995128455 1.0637415999504514 1.1826145676295958 1.0 19.817561706261994 4.745109912723504 24.951792371105398 0.9413244428877289 1.6356810775014015 0.7137590628306236 0.13131307841540074 408.99336938651425 1558158.6971693388 0.03236196692405779 0.3124933440219993 55604.49652138405 -4.745109912723504 0.6943566346136726 RPST(ph)S(ph)SASGQWSPTPEWVLSWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSTSSASGQWSPTPEWVLSWK 22 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 2 RPS(0.412)T(0.553)S(0.488)S(0.446)AS(0.097)GQWS(0.004)PT(0.001)PEWVLSWK 91.615 0.0019031 324220000.0 192400.0 156110.0 130020.0 131810.0 127100.0 157130.0 147290.0 151620.0 185690.0 164500.0 True False 191364.13977764963 161306.02697951224 148325.68584590073 148497.13248521637 143285.4316192784 146267.97294423403 140165.01999755928 162934.65431075956 139929.18761852098 154001.46916446462 1.2426124297118482 1.0474317411040202 0.9631446157666036 0.9642578950115732 0.9304160044490086 0.9497829711483359 0.9101537846231271 1.058007142365342 0.9086224201477243 1.0 17.232584588643853 4.725938524907826 2.0303551099333617 0.9630071574705322 1.3195140505013276 0.8071056005541555 0.04185800686436004 0.2930914472700327 1.3399778547056533 0.010801560418742319 0.19173501665797396 53203.29438055555 -4.725938524907826 0.3565068930307954 RPSTS(ph)SASGQWSPTPEWVLSWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RPSTSSASGQWSPTPEWVLSWK 22 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 1 RPS(0.128)T(0.18)S(0.268)S(0.268)AS(0.158)GQWSPTPEWVLSWK 171.31 3.7802e-12 3370900000.0 143160.0 138680.0 159660.0 135870.0 135910.0 143210.0 191630.0 147300.0 187890.0 156840.0 True False 142389.24246657116 143295.87996616962 182138.74021040203 153071.12806893513 153217.3328983173 133310.22978007863 182360.12480231022 158292.27397424442 141587.02709701075 146830.33692252048 0.9697535635412129 0.9759282922696287 1.2404707639301618 1.0425034177351769 1.0434991576649935 0.9079202062338374 1.241978521771956 1.0780624582900207 0.9642900102566916 1.0 17.163790551650475 2.263812739792133 24.999957406235445 1.0835102208814982 1.038301368804536 0.02605170496568432 0.10622379344539311 909.7705837577215 900682.8061533219 0.037501487649092606 0.03136396822834122 183.57466307367494 -2.263812739792133 -0.045208852076962236 RPT(ph)PQDSPIFLPVDDTSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPTPQDSPIFLPVDDTSFR 19 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 RPT(0.5)PQDS(0.5)PIFLPVDDTSFR 61.801 0.030236 31615000.0 11167.0 13489.0 9080.6 10473.0 12859.0 16084.0 12458.0 10969.0 12547.0 13326.0 True False 11106.878112770335 13937.973210727308 10359.069550009881 11798.880726179113 14496.517428735662 14972.150937663466 11855.358945818414 11787.56247945339 9454.959971186283 12475.52327103741 0.8902935669684928 1.1172255389948296 0.8303515071034344 0.945762391672247 1.1619967446487875 1.200122080043096 0.9502895139750378 0.9448551554401604 0.7578808331941054 1.0 13.60681270851466 1.6886982774669936 2.8212320218041125 0.8776280811165363 1.0230110496402804 0.1579969976651905 0.1244284083296586 0.3970845886420402 7.110946541521742 0.07968396944198504 0.034782400446566546 48.831299002052354 -1.6886982774669936 0.1453829685237441 RPTCPDTSVAGSLPT(ph)PPVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPTCPDTSVAGSLPTPPVPR 20 1 Q5JS13-2;Q5JS13-7;Q5JS13 Q5JS13-2 RALGPS1 Ras-specific guanine nucleotide-releasing factor RalGPS1 1 RPTCPDTSVAGS(0.005)LPT(0.995)PPVPR 91.618 0.0010366 182680000.0 60662.0 89841.0 72097.0 79384.0 61318.0 66601.0 69322.0 71140.0 71667.0 73364.0 True False 60335.402532181804 92831.30337496864 82247.63092164202 89434.00626057507 69126.48383973986 61997.0296318903 65968.63002424344 76448.8280416004 54005.6281385995 68681.84670991954 0.8784767070549331 1.3516133858054993 1.1975162995983217 1.3021491201059734 1.0064738668384712 0.9026698116277678 0.9604958687681262 1.1130863787702885 0.786315900425543 1.0 16.067641210436157 3.1219209747149055 6.634307630288826 0.9713274454233427 1.1947553240619413 0.37324506768054855 0.14014093777949788 0.22724679351305596 12.332265822176305 0.039300869995325984 0.04718530242001347 1324.1005766963506 -3.1219209747149055 0.2234278786385986 RPTELLS(ph)NPQFIVDGATR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPTELLSNPQFIVDGATR 18 1 P07384;E9PRM1;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PLX0 P07384 CAPN1 Calpain-1 catalytic subunit 1 RPT(0.247)ELLS(0.753)NPQFIVDGATR 94.301 0.0012184 201220000.0 98884.0 87089.0 81503.0 89362.0 75660.0 100310.0 96863.0 89148.0 137300.0 103650.0 True False 98351.61953104519 89987.70471858777 92977.91396322449 100675.2200375078 85294.85252804567 93375.80580434109 92177.36663740646 95800.67644437155 103464.25472574153 97034.9682607705 1.0135688329050239 0.9273739800352796 0.9581897704480807 1.0375148448233067 0.8790114951016977 0.9622902699715856 0.9499396793709481 0.9872799276536894 1.0662574181267628 1.0 16.566217121130663 1.4564144818826112 4.553640822514218 1.0329446656938177 0.9600405028675888 0.29959391835578986 0.0434503106876232 0.21830443235507055 8.922882434385599 0.027651786388751654 0.010607043174298912 28.603190718974187 -1.4564144818826112 -0.07290416282622891 RPTELLSNPQFIVDGATR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPTELLSNPQFIVDGATR 18 1 P07384;E9PRM1;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PLX0 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 216.3 1.4488999999999999e-18 9498600000.0 2584200.0 3365200.0 3226300.0 3185000.0 3019000.0 3198100.0 3171400.0 2783100.0 3459300.0 2893900.0 False True 2570286.9543316117 3477208.6476936396 3680534.9964976893 3588220.6734345905 3403451.75498507 2977022.8745176294 3017987.266075497 2990789.054295446 2606801.8672451344 2709208.8244075575 0.9487223469728935 1.2834775290730962 1.3585276126887482 1.3244533389629916 1.2562530153906935 1.0988532326106817 1.1139736586143234 1.1039344872019836 0.9622004194583202 1.0 21.36944016933366 2.0453829360843825 1.0073598938413577 1.0016865482608093 1.2445385301630278 0.40029247670428014 0.11144343139410202 0.5555505449560819 1.0418045801687676 0.09020431317762337 0.04390611050411057 111.01532536043594 -2.0453829360843825 0.24285198190221857 RPTETNPVTSNS(ph)DEECNETVK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPTETNPVTSNSDEECNETVK 21 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK 410.48 6.096299999999997e-152 6805800000.0 2768640.0 2432460.0 2387390.0 2128780.0 2119010.0 3029850.0 2923470.0 2514760.0 3748890.0 2875670.0 True False 2753733.9498648234 2513422.9606468775 2723513.760434124 2398283.329731269 2388853.363143726 2820403.600999728 2782050.587360073 2702424.1608925336 2825026.2920523304 2692142.2786150463 1.0228783120933203 0.9336144603545583 1.011652980627464 0.890845684042022 0.8873429098155446 1.0476428468894536 1.0333965665407845 1.0038192194963695 1.0493599519211316 1.0 21.36032322712834 2.7189611497469848 24.947198086544027 1.0256832612639126 0.9486175602236842 0.4411889245693168 0.043640993809347266 785.9881066839835 1000444.3178748951 0.014289007687170605 0.013488876887172969 523.5535994730135 -2.7189611497469848 -0.07706570104022847 RPTETNPVTSNS(ph)DEECNETVKEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPTETNPVTSNSDEECNETVKEK 23 2 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 RPTETNPVTS(0.002)NS(0.998)DEECNETVKEK;RPTETNPVTS(0.001)NS(0.999)DEECNETVKEK 222.63 8.2976e-33 798700000.0 332196.0 336000.0 322540.0 365840.0 321700.0 449910.0 469840.0 392930.0 770430.0 433540.0 True False 330407.49364644557 347183.55688371114 367950.8284320625 412155.30648958025 362666.5881347119 418808.7806742211 447112.04423690244 422252.43185811175 580567.849733088 405871.10602773237 0.814070005820689 0.8554034808774704 0.906570640204482 1.0154832417694166 0.8935511366752271 1.0318763135743019 1.1016109242483305 1.040360906669863 1.4304241940627795 1.0 18.630662112638834 2.62709034261757 0.7134246641276701 1.1726216725451546 0.8563307402285353 0.5120932564981056 0.11545705947787664 0.577627444013887 0.61749425040938 0.08350042882551527 0.07459618666653947 423.73110208889955 -2.62709034261757 -0.3162909323166193 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 5 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 1 RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHS(0.002)NIAT(0.002)EHIPS(0.997)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK 244.89 3.8945e-46 9695690000.0 1649310.0 1257000.0 1159931.0 1104800.0 1208430.0 1823960.0 1803040.0 1271665.0 2362150.0 2050040.0 True False 1640430.2982155692 1298838.4851274523 1323239.202499009 1244667.5667223036 1362316.39757423 1697873.9383400052 1715820.0669183224 1366563.099684027 1780029.7836883462 1919204.6920724555 0.8547448351869902 0.6767587066103408 0.6894726799933505 0.648532994872083 0.7098338198116487 0.8846757958404916 0.8940266111299947 0.7120465603949426 0.9274830303620083 1.0 20.872077159173926 2.7466122156895434 23.93116604748632 0.854214018336272 0.7084885121482601 0.46489621142422843 0.08700702286978851 349.1825680090113 1037848.3901459075 0.026965855679701233 0.028119523963780136 557.9717557038794 -2.7466122156895434 -0.14572550618801183 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK ddPTM_BT-474_Trastuzumab_2h_R1 4 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 1 RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK 249.27 6.743099999999999e-47 5763920000.0 1149920.0 814590.0 765220.0 721301.0 715649.0 1194120.0 1193500.0 954320.0 1689510.0 1232770.0 True False 1143728.958488122 841703.1357199462 872956.3245885252 812617.6326433419 806782.6581660506 1111573.2950561242 1135765.8453872437 1025536.2043387685 1273152.8987741251 1154093.5631725036 0.9910192682680855 0.7293196692009761 0.756399959626188 0.7041176370566752 0.6990617432682621 0.9631570008938488 0.9841193830638145 0.8886075072801359 1.103162637242632 1.0 20.138328758345043 2.722875843938795 22.578806615855772 0.9730465979711879 0.7683106862099718 0.5653313576850593 0.09229544167057524 174.30827434040663 250922.04099583236 0.029618634602189744 0.028046650027471816 528.2942014938491 -2.722875843938795 -0.20473591176121608 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic 0 ; 219.24 5.8261e-35 1621070000.0 291070.0 249040.0 275310.0 278710.0 279710.0 308590.0 302190.0 287400.0 381630.0 373510.0 False True 289502.91146091727 257329.14585214097 314071.2549625818 313994.6574232202 315329.410528941 287257.89964272344 287571.91522209585 308847.24738762935 287582.400080005 349672.27202200115 0.8279264174618396 0.7359152167374312 0.8981874746500363 0.8979684194217833 0.9017855739762537 0.8215060862036249 0.8224041144560699 0.8832477496762937 0.8224340992697028 1.0 18.41564387355402 -4.999999999999999 0.317422944018197 2.4079112154332165 0.8412737416842629 0.46429837606158175 0.04937350621137046 300.5311672286904 2.678261607531732 284.0233247369633 0.04636329277237552 1.0000000000000021e-05 4.999999999999999 -1.5666374737489535 RPTPQDS(ph)PIFLPVDDTSFR ddPTM_BT-474_Trastuzumab_2h_R1 5 RPTPQDSPIFLPVDDTSFR 19 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 RPTPQDS(1)PIFLPVDDTSFR;RPTPQDS(1)PIFLPVDDTSFR;RPTPQDS(1)PIFLPVDDTSFR;RPTPQDS(1)PIFLPVDDTSFR;RPTPQDS(1)PIFLPVDDTSFR 215.08 2.5401999999999997e-19 4195050000.0 890496.0 1021055.0 1026660.0 960701.0 989475.0 900059.0 874745.0 842072.0 1028561.0 959493.0 True False 885701.6684794058 1055040.1984342188 1171204.8041113096 1082325.6480971074 1115478.7761721916 837840.0398409885 832430.2424995939 904911.6885949759 775085.9235612764 898257.3352767144 0.9860221939702383 1.1745411442804488 1.3038633341641588 1.2049171274105872 1.2418254016579342 0.9327394355013934 0.9267168881433715 1.0074080701119035 0.8628773661197053 1.0 19.776769285932417 2.7334721084852265 24.977132022430027 0.9498789233208506 1.1898238474842975 0.6593381391691807 0.08480972522552882 261.76327725344186 1284871.5843807575 0.0276181056170045 0.02676644303825681 541.3424803521935 -2.7334721084852265 0.23994492416344693 RPTPQDSPIFLPVDDTSFR ddPTM_BT-474_Trastuzumab_2h_R1 8 RPTPQDSPIFLPVDDTSFR 19 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;;; 260.35 6.7061999999999995e-31 27594890000.0 4489070.0 5225790.0 5265330.0 5505080.0 5428310.0 5463120.0 5557070.0 4721580.0 5815590.0 5460800.0 False True 4464901.34590256 5399727.261093237 6006642.696931204 6202022.563551426 6119573.102385883 5085467.373201201 5288253.294031084 5073928.275297441 4382415.769413507 5112287.068773911 0.8733667115789304 1.0562253622405173 1.1749423723914212 1.2131600749562108 1.197032369282336 0.9947538752789282 1.0344202551402057 0.9924967450066002 0.8572319414888705 1.0 22.285537419120114 2.030149060258603 1.4359239048715133 0.9421096321122195 1.1039811846237797 0.277117420837658 0.10067825483025025 0.5607734923343608 2.1615473090988857 0.07205885796159373 0.03508226424354318 107.18871394251335 -2.030149060258603 0.16187155251156016 RPVGASFSFGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RPVGASFSFGGK 12 1 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;O94979-5;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 0 ; 79.00399999999998 0.038809 1556530000.0 2245500.0 2433700.0 2278100.0 2158400.0 2173800.0 2486900.0 2513000.0 2265800.0 3224800.0 2597400.0 False True 2233410.4774985053 2514704.233297282 2598836.678399832 2431653.2186942645 2450620.5448779534 2314986.456532905 2391436.589407744 2434885.5014992733 2430091.250106125 2431631.708253979 0.9184822150152805 1.034163284168947 1.068762456739764 1.0000088460930214 1.0078090923718086 0.9520300498940151 0.9834698985418736 1.0013381110446329 0.9993664919968657 1.0 21.213493305954756 2.9670776215380545 24.772715203214428 0.9873501446427906 1.0109371462183832 0.04949877387713031 0.037832792812125954 1584.1769404649274 1192026.993345364 0.011696656373046201 0.012412670573931502 926.9954906601613 -2.9670776215380545 0.02358700157559257 RPVINAGDGVGEHPTQALLDIFTIR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPVINAGDGVGEHPTQALLDIFTIR 25 1 F8VPD4;P27708;H7C2E4 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 136.4 1.959e-05 142520000.0 41590.0 69832.0 79902.0 64762.0 76804.0 71652.0 84884.0 64005.0 74296.0 71467.0 False True 41366.08406108341 72156.31590566458 91151.50707936577 72960.86255980244 86584.53414702653 66698.86589066543 80777.83663163034 68781.37811080462 55986.74631539468 66905.914874023 0.6182724522782704 1.0784743926083 1.3623833894356685 1.090499437862561 1.294123760358951 0.9969053710161886 1.2073347593217543 1.0280313517917352 0.8367981578431742 1.0 16.029846138730235 -0.18402810358056154 8.167810794553372 0.9999975204584196 1.0761648913146205 0.0 0.20552476068797082 0.0 0.0 0.1930561692436239 0.04550377547402143 0.65459381335128 0.18402810358056154 0.07616737085620084 RPVS(ph)FPETPYTVSPAGADR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPVSFPETPYTVSPAGADR 19 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 RPVS(1)FPETPYTVSPAGADR 111.88 0.00012716 215780000.0 38476.0 41269.0 43626.0 50927.0 42039.0 54121.0 57177.0 53486.0 50119.0 60233.0 True False 38268.84949108546 42642.61371736267 49768.1615960103 57374.35297833708 47392.41746532534 50379.74265713034 54411.130072648884 57477.3969164048 37767.844010192544 56388.878371934275 0.6786595264170484 0.7562238325809055 0.8825882520263212 1.017476400220319 0.8404568211612695 0.8934340265616137 0.9649266246042278 1.019303780743621 0.6697746984978203 1.0 15.783123026218743 4.301895948311397 2.7255304038919403 0.9227019173761789 0.6903251701268298 0.39009994494688116 0.09913178248140166 0.2576176612291989 3.7106380672580723 0.024600199851170207 0.08776072143322697 20039.91837713613 -4.301895948311397 -0.2323767472493491 RPWEEDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 RPWEEDFR 8 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 ;; 107.15 0.0065062 1099030000.0 998660.0 1211990.0 1222560.0 1228390.0 1127870.0 1231200.0 1298680.0 1041330.0 1316860.0 1219530.0 False True 993283.325521556 1252330.3544865726 1394685.8213179829 1383904.0480503365 1271497.5590907603 1146090.0419330564 1235857.886960624 1119039.3323665983 992337.498019955 1141698.551307837 0.8700048926082383 1.0969010629399545 1.22158850050247 1.2121448752519206 1.1136893864271231 1.003846453707232 1.0824730271794825 0.9801530632448625 0.8691764536998088 1.0 20.122750347921173 1.8437288094202886 1.3682641608527797 0.9334949683707714 1.105788991973546 0.2769401463765645 0.09967296652153397 0.5370698104524415 1.881883043436052 0.07964021168904388 0.033293784021861915 69.77965363639883 -1.8437288094202886 0.17229402360277457 RPWRPEEAVEDPDEEDEDNT(ph)SEAENGFSLEEVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 RPWRPEEAVEDPDEEDEDNT(0.5)S(0.5)EAENGFSLEEVLR 172.78 4.1403e-13 119060000.0 38133.0 45034.0 44646.0 43301.0 50577.0 43928.0 39058.0 48410.0 58788.0 50796.0 True False 37927.69616497458 46532.9294663721 50931.76873001138 48782.90216024842 57017.68115663454 40891.36075538923 37168.615323950515 52022.60002099907 44300.48511884112 47554.15579135646 0.7975684886801921 0.9785249825595689 1.0710266617595774 1.025838885128843 1.1990052227359316 0.8598903728792874 0.7816060385348352 1.093965378110125 0.9315796775619191 1.0 15.5372838042861 4.7296763949333185 4.699829008636461 0.9975433502331468 0.7870705315018541 0.21589757028023893 0.11228030488614553 0.27509760660771876 16.7488236166654 0.02761368407169732 0.18777966392907838 53663.17878804179 -4.7296763949333185 -0.21047281873129264 RPWRPEEAVEDPDEEDEDNTS(ph)EAENGFSLEEVLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 RPWRPEEAVEDPDEEDEDNT(0.437)S(0.563)EAENGFSLEEVLR;RPWRPEEAVEDPDEEDEDNT(0.069)S(0.93)EAENGFS(0.001)LEEVLR;RPWRPEEAVEDPDEEDEDNT(0.077)S(0.923)EAENGFS(0.001)LEEVLR;RPWRPEEAVEDPDEEDEDNT(0.132)S(0.868)EAENGFSLEEVLR 170.49 7.1517e-15 1241220000.0 234683.0 398538.0 405792.0 523633.0 425442.0 336667.0 342458.0 279893.0 246978.0 339470.0 True False 233419.4928037323 411803.096408691 462923.9863927062 589924.8841106993 479619.5169077029 313394.00271887286 325891.99822339736 300780.03692785586 186113.58123564563 317804.7339651107 0.7344745620729414 1.295773952989321 1.4566302415228563 1.856249517590454 1.509164167958419 0.9861212537925189 1.025447274360534 0.9464303227178364 0.5856224320940342 1.0 18.277781089422557 2.640583225823846 4.750476846978953 0.9095011659651098 1.3970678795690512 0.39802457660547585 0.283959124082711 0.24744056074562912 9.173012613138594 0.09966022508317517 0.09379419124987007 437.10243496973965 -2.640583225823846 0.48756671360394144 RPYDLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPYDLDR 7 1 Q15424;Q15424-3;Q15424-4;Q15424-2;K7EII0;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ;;; 102.0 0.013948 1343330000.0 717080.0 936270.0 1038820.0 839050.0 660700.0 752630.0 834330.0 697822.0 1084910.0 767640.0 False True 713219.320955078 967433.1809628321 1185076.8264146938 945273.6439702646 744836.2287242911 700602.4596004514 793970.270449885 749897.0211083168 817548.4675491918 718648.557990332 0.992445212649648 1.346183986882566 1.649035280511391 1.3153489747668587 1.0364401631963078 0.9748888407424824 1.1048102186000162 1.0434822595419515 1.1376192973035788 1.0 19.45492689378059 3.270420917764265 5.914261733200345 1.051083185836629 1.3532094930553162 0.4322304188530889 0.15410680552898756 0.16491674816929944 16.08240232360044 0.04444253644953178 0.059045953907131105 1863.8927444518674 -3.270420917764265 0.3021263072186873 RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCR ddPTM_BT-474_Trastuzumab_2h_R1 2 RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCR 32 1 P25786;P25786-2;F5GX11 P25786 PSMA1 Proteasome subunit alpha type-1 0 ; 218.93 4.7709999999999996e-36 1739220000.0 507150.0 653140.0 599470.0 564350.0 543230.0 591110.0 569060.0 517120.0 709890.0 583250.0 False True 504419.5607496623 674879.370068532 683870.1653133522 635796.6521358916 612407.1205235296 550247.9570232682 541532.3937796943 555710.1202821534 534947.1215386495 546026.4856545524 0.9238005371570693 1.2359828466187248 1.2524487058417304 1.164406249220176 1.1215703571400992 1.0077312575115387 0.9917694617515289 1.0177347342702483 0.979709108611057 1.0 19.05861140689281 2.808808075437982 3.076886645686254 0.9996977462261878 1.1574698953247955 0.40865548268648855 0.08408514624882109 0.2500847301725149 4.6584128880583915 0.02742409991695846 0.028637980398549454 643.8846554281162 -2.808808075437982 0.1577721490986077 RPYPDPEDEIPDEMIQCVVCEDWFHGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RPYPDPEDEIPDEMIQCVVCEDWFHGR 27 1 E9PCJ7;Q8N806;H0YJA0;H0YJM2 E9PCJ7 UBR7 Putative E3 ubiquitin-protein ligase UBR7 0 ;;; 189.78 4.4512999999999996e-18 207475000.0 58537.7 76317.0 66907.0 69779.2 66923.9 66942.0 67319.4 49630.5 79158.0 68367.0 False True 58222.53952734986 78857.16521039933 76326.9240339308 78613.2395653775 75446.26197596717 62314.457104517955 64062.90343691838 53334.17992857253 59650.57156285682 64003.75952806648 0.9096737434903104 1.232070831336391 1.1925381352084552 1.2282597170077887 1.1787785988240738 0.9736062000731731 1.000924069293554 0.8332976112939865 0.9319854333978501 1.0 15.965869029868308 2.588723003067452 2.6247043356656605 0.9210636948740376 1.1604844726758745 0.5059012399018519 0.09768209022982074 0.2094820480586096 2.826038827872596 0.03499566612106498 0.031851929107370384 387.9028791239474 -2.588723003067452 0.2394207778018369 RPYTVILIER ddPTM_BT-474_Trastuzumab_2h_R1 1 RPYTVILIER 10 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 88.803 0.019826 0.0 664150.0 688800.0 588300.0 490250.0 563760.0 667060.0 618650.0 600570.0 774740.0 662500.0 False True 660574.2901940027 711726.2916116073 671127.5264047332 552315.5997335346 635551.4943326871 620947.7122903382 588723.536027498 645387.5830326675 583815.7079841287 620218.6828052133 1.065066739373705 1.1475408776667455 1.0820820865460907 0.8905175142990583 1.0247216215063442 1.0011754394140913 0.94921928724355 1.0405806869822378 0.941306226609563 1.0 19.242417459246532 3.9465686608622397 10.667235501803042 0.9844578436605618 1.108441997872228 0.5953636880622986 0.04542133316317858 0.4641043665500103 91.85273432918657 0.010989276255099477 0.019884864188249043 8842.369537826376 -3.9465686608622397 0.1239841542116662 RQAVDVSPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RQAVDVSPLR 10 1 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed 0 ;;; 180.81 3.1367e-06 1566010000.0 754350.0 969260.0 958140.0 895350.0 752490.0 837860.0 895520.0 729960.0 1212780.0 904150.0 False True 750288.6634161632 1001521.233169957 1093037.7836978254 1008701.2181976965 848315.1411423355 779940.7103102903 852200.2763813857 784433.3218617736 913906.6194194073 846446.37291824 0.8863983442086709 1.1832069522810702 1.2913254975970039 1.1916894566162066 1.0022077810052545 0.921429561593297 1.0067977176667535 0.9267371766947646 1.0796981931278042 1.0 19.691059142704578 3.171856289980884 6.107040253272463 0.9784563188905334 1.1520346228239458 0.3198173391941259 0.10499359691250092 0.21645122882330786 14.728348359555842 0.03087251508275384 0.03733397202610645 1485.4440207697241 -3.171856289980884 0.17357830393341234 RQDLEDSLQAQQYFADANEAESWMR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQDLEDSLQAQQYFADANEAESWMR 25 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ; 220.83 1.9144e-33 428440000.0 161772.0 173235.0 196118.0 203705.0 198412.0 181341.0 208824.0 171584.0 202557.0 208676.0 False True 160901.0375265587 179001.02225223105 223729.7097117856 229494.0321136555 223678.5921199392 168805.3235007976 198722.38533485174 184388.46936589782 152639.54147474136 195358.11902348805 0.823620939487104 0.9162712210118569 1.1452286233616245 1.1747350622579615 1.144966962407363 0.8640814333419232 1.017221021210586 0.9438485090232092 0.7813319571140496 1.0 17.57576168916761 2.728440695643815 24.97132628827907 0.928050088705469 1.0472612984934542 0.19992767608842066 0.11898025487204046 1276.0946631186744 3148811.0422063866 0.04134094458273929 0.03936518972480488 535.1070781304862 -2.728440695643815 0.11921120978798516 RQDLEVEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQDLEVEVR 9 1 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 A0A499FIX8 ESYT2 Extended synaptotagmin-2 0 77.192 0.040124 0.0 45204.0 58073.0 54801.0 55179.0 61614.0 63040.0 48387.0 43636.0 52170.0 54705.0 False True 44960.62668663652 60005.9246991302 62516.504461169054 62164.655742369694 69460.1776852103 58682.19318019804 46046.3359537097 46892.33989911827 39313.4025421845 51213.68006469318 0.8779026742433311 1.1716776576752665 1.2206993206150805 1.213829110968851 1.3562817121805761 1.1458304325342492 0.8991022690723243 0.9156213699129571 0.7676347900116485 1.0 15.644241610191154 2.257610346729016 4.93537039182697 0.88975834247079 1.1805248986407828 0.5299878769410786 0.12377999440429471 0.14210655154485835 8.964505698887479 0.046044450945825 0.036423352882532053 180.97156693466738 -2.257610346729016 0.2907665561699928 RQDS(ph)AGPVLDGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQDSAGPVLDGAR 13 1 Q0VF96 Q0VF96 CGNL1 Cingulin-like protein 1 1 RQDS(1)AGPVLDGAR;RQDS(1)AGPVLDGAR 158.52 4.9125e-07 288440000.0 453620.0 541340.0 467830.0 551290.0 480490.0 478240.0 463250.0 367980.0 465870.0 466390.0 True False 451177.7603219201 559358.1746530593 533696.3975487442 621083.257474962 541677.5534126444 445180.39445586794 440840.82771314675 395440.53616457793 351062.5808381728 436624.59090343217 1.0333310805705551 1.281096361282986 1.2223232696180901 1.4224651346133788 1.2406024871202153 1.0195953313915112 1.0096564346066506 0.9056762821039485 0.8040375832056994 1.0 18.736033860320642 2.5299928702600925 2.056423873092127 0.9165178521346207 1.2527306470382409 0.6720568311886687 0.10332787620989833 0.18842720246579214 1.6002424778052915 0.041750185954213474 0.03557961292586782 338.83859343699754 -2.5299928702600925 0.3362127949036202 RQEAIAQNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQEAIAQNR 9 1 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 163.64 0.0001008 89048000.0 45078.0 50519.0 53415.0 49051.0 49012.0 45828.0 49034.0 42623.0 54912.0 48967.0 False True 44835.30505663664 52200.494375619615 60935.36770849702 55260.85157068765 55253.387683116256 42660.01822750819 46662.03809192968 45803.74469520851 41379.67338310204 45841.88413724214 0.9780423710859705 1.138707436617155 1.3292509427855927 1.2054664115734612 1.2053035934931866 0.9305904203193737 1.0178909303167416 0.9991680219355852 0.9026608343413403 1.0 15.48437872075583 2.7421115222409718 24.982478404809296 0.9764270569627874 1.1802076205040983 0.5685797153008276 0.0874124296610426 237.54723176259913 1671271.4697917055 0.028394259034824763 0.029044345757421288 552.2192251463043 -2.7421115222409718 0.2037805635413109 RQEEEESVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQEEEESVKK 10 2 Q9Y5A9;Q9Y5A9-2 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 0 131.17 0.00014464 319640000.0 217870.0 211330.0 189070.0 167700.0 185630.0 270200.0 258270.0 281010.0 401570.0 268520.0 False True 216697.01212763257 218363.9912983174 215689.4125740994 188930.80280533174 209268.8801847887 251521.7099823842 245776.49341278893 301980.393139867 302608.45426231576 251382.82370846215 0.8620199619483311 0.8686511993021533 0.8580117344224055 0.7515660776586777 0.8324708788675453 1.000552489115498 0.977698037547008 1.2012769555412612 1.2037753805059563 1.0 17.93952655220962 2.2735125057494985 1.5507203244793175 1.147604075406487 0.834610671623378 0.7505900886201601 0.07220916638907238 0.17567633022597468 0.8404624520331493 0.03904351232153751 0.02437529581424963 187.7208472851648 -2.2735125057494985 -0.3129934037831089 RQEELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQEELDR 7 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 157.68 0.011884 0.0 238160.0 279210.0 296010.0 318620.0 285950.0 253720.0 277910.0 270350.0 328430.0 299780.0 False True 236877.77302206343 288503.3360639905 337685.63503495645 358957.25933115545 322364.0375415636 236180.93359263687 264466.4315807029 290524.88980948325 247492.82723652752 280647.78374542977 0.8440393501804052 1.0279907869348661 1.203236421568412 1.2790311562080914 1.1486427337476282 0.8415563823118306 0.9423428471489208 1.0351939571096447 0.8818627531405112 1.0 18.09840114092675 2.755606401319792 24.441062110018763 0.9502426046967426 1.1121711041107696 0.30676478968737897 0.11945282164545143 833.7493850546674 1195468.1140919523 0.039443588108152614 0.041728870569367374 569.647769650187 -2.755606401319792 0.16192849941402698 RQEELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQEELQR 7 1 Q9NYJ1;Q9NYJ1-2 Q9NYJ1 COA4 Cytochrome c oxidase assembly factor 4 homolog, mitochondrial 0 139.97 0.0042586 94641000.0 48891.0 59506.0 40159.0 49102.0 44228.0 46670.0 41293.0 43049.0 59788.0 45394.0 False True 48627.77628830077 61486.621237863365 45813.03813171452 55318.30816545848 49860.17364010585 43443.812749362965 39295.499835421426 46261.53497839266 45054.04851815462 42496.91605624134 1.144266003301174 1.446849017384947 1.0780320640463548 1.3017017068308918 1.1732656923650606 1.0222815390149367 0.9246670930995772 1.0885856968343102 1.0601721889308182 1.0 15.375070530169225 2.864842628172023 3.4047283284730647 1.021641738180909 1.2452078899552743 0.5349754406371723 0.09918339863640327 0.18967482134086266 4.07285220650623 0.03005443497879964 0.03224018272265356 732.5590334633965 -2.864842628172023 0.22356615177436523 RQEHDISLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQEHDISLDR 10 1 Q92797;A0A087WUE9;M0R3C7;Q92797-2 Q92797 SYMPK Symplekin 0 ; 131.43 0.00016246 931060000.0 150147.0 201037.0 165575.0 187910.0 168523.0 161732.0 165603.0 156514.0 192238.0 176882.0 False True 149338.62523490013 207728.39501556716 188886.52079630052 211699.38673315366 189983.4051359217 150551.847516177 157592.1502251059 168193.86944198815 144863.52075722546 165593.23932370087 0.9018401104103876 1.2544497339622707 1.14066565499734 1.2784301315546145 1.1472896231261172 0.9091666310233775 0.9516822719860292 1.0157049293129872 0.87481542935486 1.0 17.337284247556223 2.7501910547089703 22.21154902293785 0.9567163141341397 1.1578651464374945 0.4723409983787542 0.10206281837220232 139.41933023309903 266258.8540452659 0.03011971194360231 0.03163006809019031 562.5887646541423 -2.7501910547089703 0.20114883230335479 RQEIEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQEIEQK 7 1 Q9H307 Q9H307 PNN Pinin 0 129.72 0.005825100000000001 184240000.0 183720.0 196600.0 174140.0 189730.0 181020.0 202320.0 232360.0 208890.0 291200.0 252580.0 False True 182730.87193321084 203143.7121527904 198657.39834798613 213749.79854654497 204071.82401039964 188334.09461005195 221119.85909860066 224478.43252192705 219437.66188008647 236460.12815538238 0.7727766763838297 0.859103451129405 0.8401306380813793 0.9039570443186344 0.8630284758887563 0.7964729448437671 0.9351253457551146 0.9493288964743268 0.9280112617374963 1.0 17.851237411650626 2.01241899240977 0.2853266252688627 1.0197710872041579 0.7912106195822136 0.6578006162077594 0.03953795190199221 1.1804641237289866 0.30520416391930055 0.07409518859101091 0.09937855030387187 102.90085715448147 -2.01241899240977 -0.22856046762194426 RQELVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQELVTK 7 1 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 92.491 0.043139 0.0 166150.0 231830.0 254370.0 186450.0 214720.0 286240.0 238610.0 198050.0 298240.0 244600.0 False True 165255.4668610003 239546.32140580585 290183.08497632487 210054.55088285077 242063.3192548505 266452.9025364831 227067.52272128224 212829.49667752278 224742.7482112534 228989.4185874042 0.7216729396512401 1.0461021425510635 1.2672335986807326 0.9173111673833695 1.0570939074307317 1.1636035594141625 0.9916070538194394 0.9294293945564421 0.981454730955047 1.0 17.804921408548633 2.008555911496709 24.97448265206829 0.9619696819053325 1.0400834700092199 0.03201854123237802 0.13657346722892397 577.7972864478947 1686567.4440165767 0.05134261610190438 0.037858441577789774 101.98960540093967 -2.008555911496709 0.07811378810388736 RQEQIAK ddPTM_BT-474_Trastuzumab_2h_R1 5 RQEQIAK 7 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 ;;;; 155.0 0.0026311 3003000000.0 2197173.0 2113997.0 2057473.0 1865153.0 1709424.0 1904575.0 2127044.0 1931369.0 2741340.0 2278885.0 False True 2185343.664696872 2184360.11220683 2347147.3145240964 2101281.1785615534 1927109.0138501443 1772916.213137306 2024150.7556228423 2075497.5620730645 2065773.489074028 2133444.608248394 1.0243264138416455 1.0238653976585963 1.1001679187964282 0.9849241786908883 0.9032852347792354 0.831011129270851 0.9487711786830574 0.9728387388398589 0.9682808173632755 1.0 21.024753222894482 3.490932210519658 5.968947099531175 0.9349621987193626 1.046755945660463 0.5258368684960546 0.04761743487467981 0.13465913280403263 18.211321222518233 0.013951905153181078 0.020514262800594717 3096.9358575269275 -3.490932210519658 0.11179374694110034 RQEQIQAMPLADSQAVR ddPTM_BT-474_Trastuzumab_2h_R1 4 RQEQIQAMPLADSQAVR 17 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 220.34 6.4728000000000006e-15 1870770000.0 459341.0 570204.0 522825.0 563862.0 576377.0 586579.0 537345.0 498315.0 584280.0 553451.0 False True 456867.9590935833 589182.8954444033 596434.2155236353 635246.871385926 649775.1944958683 546030.1743884421 511351.56949275936 535501.7956922987 440292.0229508825 518129.28334676044 0.8817644047109807 1.1371349089530034 1.1511301034195145 1.2260393145175392 1.2540792720665495 1.0538492842200715 0.9869188751305047 1.0335293003192634 0.84977251258006 1.0 18.982952597776368 2.446582397299399 4.263149467421504 0.9794702768871509 1.1386750357707274 0.34718361320109736 0.10380668235940388 0.248216734277715 10.340058119751264 0.037729477674192456 0.032089517975836486 279.6291208620148 -2.446582397299399 0.15920475888357644 RQEQPSIEST(ph)SPISR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 RQEQPS(0.02)IES(0.184)T(0.575)S(0.222)PISR 65.085 0.03668 1176300000.0 158790.0 192290.0 154920.0 197510.0 191050.0 220100.0 254270.0 206760.0 345950.0 261430.0 True False 157935.0922832275 198690.2564082404 176731.3894112209 222514.7457488437 215379.08505793227 204885.00505966973 241969.9886942727 222189.4811060065 260695.25799250003 244745.31357851665 0.6453038465742079 0.8118245595926341 0.7221032624778893 0.9091685658669776 0.8800131120338555 0.8371355596720779 0.9886603553560849 0.907839573543973 1.0651695600654125 1.0 17.90092170958033 6.223880645323662 0.23761012103188436 1.030540781035187 5.281385889899061e-10 0.7633860038813148 0.05927904377974207 9.90927050966121 0.2715788704188266 0.08034226885496157 3.3829653530932435 1674482.6242725616 -6.223880645323662 -1.0305407805070483 RQEQPSIESTS(ph)PISR ddPTM_BT-474_Trastuzumab_2h_R1 3 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 RQEQPSIES(0.14)T(0.053)S(0.807)PISR;RQEQPSIES(0.348)T(0.042)S(0.61)PISR;RQEQPSIES(0.199)T(0.199)S(0.602)PISR 148.7 2.1352e-06 2703550000.0 1261710.0 998720.0 938800.0 1020790.0 950110.0 1095860.0 1044460.0 984130.0 1439780.0 1159300.0 True False 1254917.0935491596 1031961.791461011 1070974.879804118 1150021.9093360442 1071100.8767568273 1020105.7775769646 993935.4795753334 1057570.7779108835 1084965.5110635697 1085312.4814733355 1.1562726080930923 0.950843014410099 0.9867894252448347 1.0596228542169388 0.986905518033649 0.9399189588164955 0.9158058131111182 0.9744389712308551 0.9996803036768777 1.0 20.04967905030423 3.03261002518309 6.423911068765191 0.9612228145231185 1.0282006163678907 0.2674286853795075 0.055470176938887596 0.256204861738105 31.92300623743903 0.01590073479028484 0.018847486811618613 1077.9783166598056 -3.03261002518309 0.0669778018447722 RQEQTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RQEQTLR 7 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 ;; 146.54 0.0035467 188925000.0 211430.0 245908.0 240307.0 223440.0 223328.0 232724.0 252265.0 196946.0 265580.0 250403.0 False True 210291.68437208148 254092.89912547462 274140.13681411184 251727.48109018066 251767.497031237 216636.33765336944 240061.97820411628 211643.1105915239 200131.36758967512 234422.06615920586 0.8970643754554385 1.0839120364757364 1.169429743989765 1.0738216125064863 1.0739923129090208 0.924129461030527 1.0240587933436271 0.9028293029709421 0.8537223942636761 1.0 17.838748851535318 2.7410569441994563 24.538412958581674 0.9392989585920037 1.067879096442775 0.3692147493176404 0.07718308675772059 181.19540657136108 1781119.228605684 0.024487851808630532 0.024904439325013503 550.8799224202726 -2.7410569441994563 0.12858013785077116 RQGS(ph)FSEDVISHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RQGSFSEDVISHK 13 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 1 RQGS(0.5)FS(0.5)EDVISHK;RQGS(0.611)FS(0.389)EDVISHK 144.97 2.5465e-05 597080000.0 371860.0 383940.0 347830.0 353830.0 364606.0 417130.0 391780.0 363990.0 510810.0 429870.0 True False 369857.9470775298 396719.21080336935 396801.44060744176 398624.84172099276 411036.4129109256 388294.7849184008 372828.1046550597 391152.78210376896 384927.72000332066 402435.32856977737 0.9190493995444561 0.9857961829874066 0.9860005134679453 0.9905314305721449 1.0213725876694668 0.9648625688464506 0.9264298588795885 0.9719643240415654 0.9564958458575759 1.0 18.618397434936057 3.5675282872462173 0.0011116802598566304 1.6904232010646658 0.2518747942307179 0.020940192770306565 0.029885596225349993 4112472.7386101596 1065.635946684461 685842.6218973182 693129.7237333234 3694.2670573668242 -3.5675282872462173 -1.4385484068339478 RQHEAEEGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQHEAEEGVR 10 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 116.23 0.00072537 79681000.0 27605.0 37799.0 34672.0 35549.0 31373.0 32108.0 28415.0 23407.0 36303.0 30436.0 False True 27456.377747203835 39057.11686502199 39553.516225573505 40049.499755078905 35368.16558766031 29888.449534102125 27040.45789415881 25153.749198337653 27356.612085277415 28493.54842242944 0.9635998065299171 1.3707354481085676 1.3881569132484013 1.405563784521583 1.2412692537732273 1.0489549806500986 0.9490028231398939 0.8827875287915078 0.9600984643858166 1.0 14.798347677331437 2.634855685622891 2.383504171302313 0.9337905163198253 1.2985479777773683 0.6225491407707077 0.12070549746628391 0.18383482185069477 2.055092311618372 0.04432815335813871 0.04124941892879183 431.37570852871636 -2.634855685622891 0.36475746145754295 RQIQAAYSILSEVQQAVSQGSSDSQILDLSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQIQAAYSILSEVQQAVSQGSSDSQILDLSNR 32 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 208.58 5.1392e-27 341000000.0 72667.0 93264.0 94685.0 102737.0 92716.0 111144.0 103563.0 98309.0 108727.0 105749.0 False True 72275.76894606274 96368.23586072147 108015.82498322634 115743.49366613818 104522.83302921354 103460.87688483401 98553.26204092104 105645.3167829869 81932.68771715729 99000.00828372626 0.7300582110955592 0.9734164423960214 1.091068847930411 1.1691261008223999 1.055786103872429 1.0450592750287784 0.9954874120664224 1.0671243226587992 0.82760283698507 1.0 16.59514102545776 4.704929973827172 3.192885849810375 1.039324299175595 0.6964718981731917 0.537266201057923 0.08321732338935847 0.22429838229310847 3.6958640685461734 0.02022409873888619 0.1827997104356137 50690.896706372834 -4.704929973827172 -0.34285240100240344 RQLEEAEEEAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQLEEAEEEAQR 12 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 252.37 7.4867e-21 389810000.0 187050.0 231210.0 211490.0 208200.0 221490.0 212120.0 235030.0 197020.0 271220.0 240840.0 False True 186042.9435832086 238905.6850806037 241265.953695966 234558.0986527728 249695.43862591687 197456.6436767702 223660.70099821014 211722.6328472887 204381.46516180318 225469.38500650213 0.8251361646187284 1.0595925698458533 1.0700608141943897 1.0403101895452838 1.1074471978477969 0.8757581153249516 0.9919781392571776 0.9390305155672599 0.9064710277890242 1.0 17.782572027217658 2.7328466140916854 24.995320836036104 0.9430698306494391 1.0265335764450347 0.19502533158232616 0.07861613946452731 753.0084543243479 3293950.149338626 0.024619007104027216 0.023804378070207535 540.563370836097 -2.7328466140916854 0.08346374579559568 RQLHGES(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQLHGESPTR 10 1 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;Q9UQ26-2;A0A0J9YXG4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 RQLHGES(0.987)PT(0.013)R;RQLHGES(0.98)PT(0.02)R 120.53 0.00033568 189021000.0 141781.0 211131.0 184903.0 187216.0 190032.0 172390.0 203408.0 156937.0 255218.0 211547.0 True False 141017.66684934995 218158.3677036152 210935.73519431302 210917.52640431104 214231.44879209084 160473.08506241027 193568.37794598116 168648.4358499385 192322.94364598885 198045.88934550152 0.7120454118759172 1.101554636779289 1.065085147141451 1.0649932048645265 1.0817263084837512 0.8102823320026425 0.9773915458971779 0.85156241519218 0.9711029311518368 1.0 17.595475231309713 2.751712725827876 24.8997450493316 0.91255616330595 1.01710261407309 0.10391945964915195 0.11765290311044961 1383.2040556603836 2618697.0632876223 0.03471333675135056 0.03660190079233246 564.5634076948418 -2.751712725827876 0.10454645076714009 RQLHGES(ph)PTRR ddPTM_BT-474_Trastuzumab_2h_R1 4 RQLHGESPTRR 11 2 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;Q9UQ26-2;A0A0J9YXG4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 RQLHGES(0.941)PT(0.059)RR;RQLHGES(0.989)PT(0.011)RR;RQLHGES(0.999)PT(0.001)RR;RQLHGES(0.997)PT(0.003)RR 107.46 0.0011446 271530000.0 66439.9 82230.0 75679.0 77705.0 87925.0 76845.0 75430.0 68394.3 91975.0 74937.0 True False 66082.19496056683 84966.97584091523 86333.9453863399 87542.44503272684 99121.72757769535 71532.88602367246 71781.16272941742 73498.22996521821 69308.99365185769 70154.45650320653 0.9419529172397827 1.2111415307883067 1.230626672767308 1.2478529432941379 1.4129070698903472 1.0196484954651872 1.0231874966651127 1.0476630228310422 0.9879485510473565 1.0 16.098247132302124 2.6030674514496783 22.668133355223937 1.0215978123392657 1.2127965957853215 0.4425473009673757 0.10827542173960505 7.216739590680431 1271.64685043482 0.035473820985012706 0.03344501645985879 400.92898215568283 -2.6030674514496783 0.1911987834460558 RQLHLEGASLELS(ph)DDDTESK ddPTM_BT-474_Trastuzumab_2h_R1 3 RQLHLEGASLELSDDDTESK 20 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 RQLHLEGASLELS(1)DDDTESK;RQLHLEGASLELS(1)DDDTESK;RQLHLEGASLELS(1)DDDTESK 323.61 3.215299999999998e-67 1232410000.0 1058270.0 993690.0 929770.0 865940.0 823520.0 1265960.0 1355470.0 1240540.0 1893500.0 1454160.0 True False 1052572.3919048514 1026764.3709517102 1060673.5342942846 975567.9152131716 928390.3906145407 1178447.1649492928 1289900.7377017557 1333115.3941344805 1426872.296600081 1361354.2638309873 0.7731803688944325 0.7542227605489642 0.779131165542056 0.7166157561866562 0.6819609085455516 0.8656432761543086 0.9475129082652195 0.97925678095205 1.0481270999840404 1.0 20.376611116081982 2.354272669547948 2.116104163291354 0.9995619003144806 0.7427602066485675 0.9216775946951034 0.03474478589475141 0.08425771082130763 0.7731307989525474 0.01585855648145485 0.011776582412578368 226.0854790718263 -2.354272669547948 -0.2568016936659131 RQLIPT(ph)LLSPQDLGPPGGSAPGPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQLIPTLLSPQDLGPPGGSAPGPTR 25 1 A0A087WTE6 A0A087WTE6 SRCIN1 1 RQLIPT(0.546)LLS(0.454)PQDLGPPGGSAPGPTR 71.472 0.021837 117560000.0 60030.0 84970.0 71831.0 81793.0 83060.0 71294.0 69029.0 81891.0 107070.0 89929.0 True False 59706.80514995996 87798.17508455037 81944.18043375538 92147.98541357469 93637.19866480945 66365.61358802408 65689.80355361218 88002.12225407218 80684.03316449486 84189.65422790968 0.7091940891968479 1.0428618087309407 0.9733283879741853 1.0945286123176254 1.1122174039499477 0.7882870430654797 0.7802598093084385 1.0452842817936012 0.9583604292526876 1.0 16.36135533598672 7.999922707390052 0.005445710445863768 1.848912407543029 8.732617664041846e-05 0.017166249329471306 0.13336469427031353 425747.2113950625 179.33185458704526 28072.38870826965 32995.327653731845 99982204.30247566 -7.999922707390052 -1.8488250813663887 RQLS(ph)APHITR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQLSAPHITR 10 1 A6ND36;A6ND36-2;K7EKG0 A6ND36 FAM83G Protein FAM83G 1 RQLS(1)APHITR;RQLS(1)APHITR 78.985 0.017371 445050000.0 291680.0 373240.0 352300.0 361350.0 337640.0 329960.0 321990.0 303090.0 410510.0 328120.0 True False 290109.6272886944 385663.06777165557 401900.77775350504 407096.87294994976 380636.45265092974 307150.64184229315 306414.11357875017 325708.11485983484 309345.31105217856 307179.1006823349 0.9444315275494842 1.255499045719532 1.3083597707681462 1.3252752939430714 1.2391352530345472 0.999907354243897 0.9975096381821371 1.0603199050206917 1.0070519458030571 1.0 18.228720538257527 2.7399125053777555 24.902861727722133 1.0189683701058325 1.228179828202797 0.500514233812597 0.10013559044620034 98.55324465741424 1815439.1931927358 0.03206080293972093 0.03234321152501233 549.4301724093767 -2.7399125053777555 0.2092114580969644 RQLS(ph)PQSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RQLSPQSK 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 RQLS(1)PQSK;RQLS(0.993)PQS(0.007)K;RQLS(1)PQSK;RQLS(1)PQSK 139.32 0.00040881 3243300000.0 1970070.0 1956560.0 1766140.0 1716990.0 1669340.0 1959100.0 2207880.0 1913580.0 2609950.0 2017420.0 True False 1959463.3620153517 2021682.9168345034 2014797.1604359238 1934360.7579530496 1881920.554046627 1823672.0282253467 2101076.409479336 2056381.0565623534 1966762.7940382278 1888666.528399841 1.0374850893744025 1.0704287318245427 1.0667829021902273 1.0241939108180853 0.9964281813375866 0.9655870958704603 1.1124655294545076 1.0888004979389387 1.041349949535323 1.0 20.8489365647012 2.2177513660151806 24.999850559594723 1.071862970372965 1.029115939983352 0.11920640766794954 0.04044133073415107 414.7563829706507 498277.7189209789 0.01592875573770265 0.011776615201990987 165.10163192707103 -2.2177513660151806 -0.04274703038961292 RQPPVS(ph)PLT(ph)LSPGPEAHQGFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQPPVSPLTLSPGPEAHQGFSR 22 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 2 RQPPVS(0.999)PLT(0.554)LS(0.447)PGPEAHQGFSR 83.559 0.0037016 71745000.0 34477.0 40294.0 36379.0 34788.0 31553.0 38433.0 34007.0 21505.0 34315.0 32507.0 True False 34291.379662754785 41635.16143176264 41500.84698806352 39192.15723310601 35571.08752071673 35776.21717155063 32361.951490644322 23109.81230017733 25858.528047442218 30432.375429357107 1.1268058828452485 1.3681206558591077 1.363707117914595 1.287844168592197 1.1688567526806493 1.1755972600495226 1.0634053712227083 0.7593824660129573 0.849704555842767 1.0 14.893319328794671 2.1539887533516056 1.7660732500665952 0.8448597743850104 1.2740586896216448 0.7639789281814379 0.09410708940987589 0.15508206869088867 0.9427479651981281 0.0524115660480606 0.03025155159709771 142.55706760257019 -2.1539887533516056 0.42919891523663445 RQPS(ph)MSETMPLYTLCK ddPTM_BT-474_Trastuzumab_2h_R1 5 RQPSMSETMPLYTLCK 16 1 A0A0A0MR03;Q9Y5B0;K7EJD2 A0A0A0MR03 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 RQPS(0.762)MS(0.238)ETMPLYTLCK;RQPS(0.982)MS(0.018)ETMPLYTLCK;RQPS(0.988)MS(0.012)ETMPLYTLCK;RQPS(0.783)MS(0.2)ET(0.017)MPLYTLCK;RQPS(0.988)MS(0.012)ETMPLYTLCK 310.17 7.5295e-58 2295490000.0 2853000.0 2892960.0 2708210.0 2572680.0 2593040.0 2993730.0 2848740.0 2705080.0 3911770.0 2983320.0 True False 2837639.7649981026 2989250.424768751 3089502.4278166913 2898381.024217179 2923248.273847786 2786780.4915823964 2710935.562956396 2906946.8057179144 2947766.6985325096 2792921.963451244 1.0160111174361637 1.0702950042595898 1.106190029025716 1.037759401138304 1.0466630690373806 0.9978010585511461 0.9706449368912777 1.0408263616953224 1.0554418408776172 1.0 21.41334383341296 3.108562897771653 2.3160085894881974 1.0146835565238226 1.0635012214274038 0.31408912480436235 0.031002831814495202 0.3641296021019955 3.980733587622732 0.010289385251200385 0.012852952507862949 1283.9937145702067 -3.108562897771653 0.04881766490358119 RQQEGFK ddPTM_BT-474_Trastuzumab_2h_R1 4 RQQEGFK 7 1 Q15233;Q15233-2;H7C367;Q8WXF1;Q8WXF1-2;A0A0U1RQF9 Q15233;Q8WXF1 NONO;PSPC1 Non-POU domain-containing octamer-binding protein;Paraspeckle component 1 0 ;;; 155.0 0.0026311 2724790000.0 2606860.0 2650140.0 2578920.0 2172240.0 1793240.0 2256560.0 2588160.0 2086740.0 4119510.0 2539510.0 False True 2592824.955409373 2738348.307856543 2942009.5196255194 2447245.3612752175 2021598.484633794 2100569.3185708723 2462960.8130686614 2242463.1350510153 3104311.9591058893 2377436.2976161013 1.090597025884246 1.1518072263817687 1.2374714403811895 1.0293631689434182 0.8503270883265674 0.8835438916605889 1.03597342041859 0.9432274325497486 1.305739279836284 1.0 21.180975254534268 3.572660620835591 6.280209210857862 0.9891155807124614 1.157506469971438 0.24920713090528335 0.12086807479852671 0.3081907502525485 16.882713314111196 0.03238132575707361 0.05030303698847595 3738.1835397353407 -3.572660620835591 0.1683908892589765 RQQEQQVPILEK ddPTM_BT-474_Trastuzumab_2h_R1 6 RQQEQQVPILEK 12 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;; 171.73 6.0375e-05 11445000000.0 5535980.0 5183200.0 5151040.0 4922910.0 5218470.0 6447290.0 6354140.0 5733040.0 7365280.0 6370780.0 False True 5506174.898785204 5355719.678689431 5876261.658357698 5546149.90124266 5883011.2222050065 6001604.017588174 6046765.973027978 6160868.556587251 5550205.43369562 5964191.366100829 0.9232056050516937 0.8979791810722542 0.9852570612936894 0.9299081066992206 0.9863887425951433 1.0062728791198736 1.0138450632882916 1.0329763380169679 0.9305880869688026 1.0 22.507895117773067 3.646467692637472 0.8908570950991282 1.0037158520282177 0.9105113548947767 0.4519309687755405 0.0323872744889055 0.5896350075544162 0.8854460460929228 0.013091522006119724 0.038946877840390574 4430.652534391393 -3.646467692637472 -0.09320449713344092 RQQEVETELK ddPTM_BT-474_Trastuzumab_2h_R1 5 RQQEVETELK 10 1 P08621;P08621-2;M0QYR1;P08621-3;M0QX04 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;;; 186.46 2.1436e-06 2844030000.0 2886610.0 2687040.0 2437520.0 2475300.0 2457820.0 3043680.0 2955030.0 2864890.0 4060530.0 2992930.0 False True 2871068.8124925196 2776476.5020500184 2780701.6286963522 2788672.7262017764 2770808.80835952 2833277.565652048 2812083.9095891644 3078682.63941665 3059866.7898143833 2801918.64502371 1.0246795771860193 0.99091974243475 0.9924276829503812 0.9952725540959375 0.9888969521940111 1.0111919454492486 1.0036279656382987 1.0987765989867269 1.0920612542583263 1.0 21.41798363639741 1.7540090672829693 24.99999999999999 1.0722519041875964 0.9999906737773812 0.5212262096047142 0.027109702686678606 3.34283710485293 5416.3951946200705 0.011678887969887676 0.0064764260390173965 56.75564548366893 -1.7540090672829693 -0.07226123041021526 RQS(ph)FAVLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RQSFAVLR 8 1 Q8TE77;Q8TE77-2;A0A087WWG1;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR 152.64 0.00027801 2932070000.0 1319120.0 543406.0 674370.0 877980.0 610810.0 519172.0 893790.0 741570.0 737210.0 727820.0 True False 1312018.00448801 561492.9402141357 769315.4342708823 989132.1779786826 688593.0329454876 483282.8616394321 850553.9630906272 796909.7190161604 555534.4736078943 681369.9044819478 1.9255590771734337 0.824064779675064 1.1290716381959962 1.4516816364684164 1.010600891551017 0.7092811972769428 1.2482998698589598 1.1695698823417489 0.8153199458233668 1.0 19.378078700688924 4.748545454970351 24.861374588794288 1.0638435121143024 1.9255595836389539 0.6080893834001273 0.21254609277893202 918.1454179078057 2286052.275393111 0.051209051187970735 0.6960810486232274 56046.10743571472 -4.748545454970351 0.8617160715246515 RQS(ph)GLYDSQNPPTVNNCAQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQSGLYDSQNPPTVNNCAQDR 21 1 Q96RU3-5;Q96RU3-2;Q96RU3;H0Y7W6;Q96RU3-3;B7ZL14;Q96RU3-4 Q96RU3-5 FNBP1 Formin-binding protein 1 1 RQS(1)GLYDSQNPPTVNNCAQDR;RQS(1)GLYDSQNPPTVNNCAQDR 205.87 2.7688e-22 478150000.0 132238.0 124179.0 134198.0 134947.0 125475.0 150037.0 154756.0 131422.0 159252.0 142905.0 True False 131526.0453010231 128312.22294720945 153091.9119300736 152031.2763635723 141453.49750140822 139665.29533910786 147269.86105466966 141229.3769873938 120006.47846747091 133784.68055287396 0.9831173850210885 0.959095035522384 1.1443157116151956 1.1363877817347479 1.0573220858833938 1.0439558158821465 1.1007976432433617 1.0556468528665175 0.897012109096021 1.0 17.02955339941664 1.2943800331893311 9.343930085612225 0.9488087509368108 1.0632138969316025 0.3531034493768692 0.060298857476086244 0.3283948674548242 51.875685993225545 0.042270675071813514 0.015384432199872544 19.696090594891004 -1.2943800331893311 0.11440514599479168 RQS(ph)IPEEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 RQSIPEEFK 9 1 F5H4N6;Q9Y3R0-3;Q9Y3R0-2;Q9Y3R0;F5H3G9 F5H4N6 GRIP1 Glutamate receptor-interacting protein 1 1 RQS(1)IPEEFK;RQS(1)IPEEFK 149.69 5.33e-05 1080150000.0 1134280.0 929920.0 789700.0 721930.0 726010.0 954010.0 835200.0 846480.0 1276270.0 1000870.0 True False 1128173.1625103538 960871.825051489 900882.8958045513 813326.2639788492 818463.070101592 888061.534197981 794798.1852261628 909648.6359383452 961750.3596418196 936993.6197120835 1.2040350529355957 1.0254838505162316 0.9614610781249202 0.8680168646492658 0.8734990856747635 0.947777568080839 0.8482428999574041 0.970816254029413 1.0264214605189557 1.0 19.8376796985848 4.690889341901768 1.7885715510667646 0.927988353365197 1.2778483200804076 0.6846153523376466 0.055302649505468524 0.43706059303178607 1.5290527778867955 0.014630218916854653 0.2505653103047978 49078.280891343624 -4.690889341901768 0.3498599667152106 RQS(ph)LELQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQSLELQK 8 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 RQS(1)LELQK 118.31 0.0018962 0.0 324720.0 422010.0 404090.0 340800.0 365320.0 485510.0 460710.0 462590.0 636110.0 444630.0 True False 322971.74359978363 436056.3477395674 460982.35958675557 383945.2450569887 411841.3365787157 451947.8364676069 438423.6972168889 497110.81478442444 479349.2139373008 416253.3327331054 0.775901880422583 1.0475744299185212 1.1074562612146812 0.9223835939907485 0.9894006947033417 1.0857518749462798 1.0532617104545774 1.1942506538516138 1.1515804829475116 1.0 18.66710229760756 2.5240480620098245 1.6535022361541158 1.1277186824531946 0.9759114260897712 0.2997699409924941 0.09553328557909313 0.44557592562285936 2.4629572832653057 0.0421267164465392 0.034202342386815736 334.2320263908264 -2.5240480620098245 -0.1518072563634234 RQS(ph)PEPSPVTLGR ddPTM_BT-474_Trastuzumab_2h_R1 5 RQSPEPSPVTLGR 13 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR 180.78 7.7241e-06 7251370000.0 2572630.0 3427290.0 3193500.0 3253580.0 3200590.0 3581270.0 3332130.0 3096680.0 3846870.0 3302380.0 True False 2558779.245926065 3541365.2758094477 3643117.0416003936 3665482.894402926 3608166.165116809 3333705.23430279 3170942.1419272693 3327769.9862224218 2898860.4339170605 3091619.281090238 0.8276501772313081 1.1454726322448765 1.1783847590430583 1.1856191080262375 1.167079720063207 1.078303934347046 1.025657383275556 1.0763841481312364 0.9376511692910641 1.0 21.5599312381661 1.68055928270125 1.2405468826252914 0.9794251239504201 1.1086703631378938 0.1551031991808005 0.1018826070147773 0.774159789312526 2.2572015541687342 0.0869375082406473 0.03271832544795417 47.92468673010561 -1.68055928270125 0.12924523918747366 RQS(ph)PLPPQK ddPTM_BT-474_Trastuzumab_2h_R1 12 RQSPLPPQK 9 1 Q01105;B2REB7 Q01105 SET Protein SET 1 RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK 115.91 0.0014815 24157910000.0 11032290.0 11019560.0 10078240.0 10232610.0 10149410.0 11403810.0 11253020.0 10449060.0 13883360.0 11489010.0 True False 10972893.376442637 11386339.393135317 11497168.590367554 11528057.376826873 11441877.203233855 10615491.456381248 10708668.431889044 11228821.916451583 10461991.955492867 10755771.54556366 1.0201865417054652 1.0586259985999555 1.0689301591859945 1.071801992817684 1.0637895342759662 0.9869576916367034 0.9956206662185899 1.0439810727555883 0.9726863304202509 1.0 23.358607681769747 2.7474520495908923 24.947723124876262 1.0056178311921167 1.058297826253771 0.6210886098004368 0.021940994543521875 477.90431444569265 1340910.359984636 0.007013784279332694 0.007332570813472677 559.051799311218 -2.7474520495908923 0.05267999506165433 RQS(ph)PLPPQKK ddPTM_BT-474_Trastuzumab_2h_R1 6 RQSPLPPQKK 10 2 Q01105;B2REB7 Q01105 SET Protein SET 1 RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK 102.97 0.0015009 11374390000.0 11880770.0 10586920.0 10041770.0 9309400.0 9970880.0 11987670.0 11593330.0 11769790.0 15535440.0 12197870.0 True False 11816805.254397653 10939299.232271727 11455563.93137047 10487969.085485715 11240612.465964055 11158990.588839844 11032516.337078582 12648111.495582616 11706938.976230673 11419391.49347809 1.034801658314853 0.9579581572730425 1.0031676326985584 0.9184350226958824 0.9843442597080466 0.9771966041459418 0.9661212108700834 1.107599428814248 1.0251806309396443 1.0 23.444982439892048 1.7604100893738195 24.99999999999915 1.0542793678707578 0.9756605242472086 0.3820423153957483 0.038271698782756935 8.90323066478076 10195.281656037054 0.01654785283688072 0.009176939314201105 57.59835621430129 -1.7604100893738195 -0.0786188436235492 RQS(ph)PS(ph)PSTRPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RQS(0.999)PS(0.951)PS(0.044)T(0.007)RPIR 66.02199999999999 0.031738 1760100000.0 45210.0 26017.0 38655.0 50559.0 10136.0 32038.0 35783.0 23343.0 48487.0 26749.0 True False 44966.59438330323 26882.960117391372 44097.28800471688 56959.764216068914 11426.759519221141 29823.28846933985 34052.03958566549 25084.973193352223 36538.02854251291 25041.855919028952 1.795657419669672 1.073521076245926 1.7609432842079398 2.2745823792072053 0.45630641579317244 1.1909376272178593 1.359804947994682 1.0017218082582493 1.4590782991746303 1.0 14.612053867776755 3.2414398608185624 24.999999983345145 1.0972044436556052 1.6820410719474104 0.4200298876810511 0.37128845117771914 83.02533665107116 720888.194844115 0.10490711288537112 0.13603427586807904 1743.571898613536 -3.2414398608185624 0.5848366282918052 RQS(ph)PSPS(ph)TRPIR ddPTM_BT-474_Trastuzumab_2h_R1 3 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RQS(1)PS(0.179)PS(0.705)T(0.117)RPIR;RQS(0.996)PS(0.105)PS(0.742)T(0.158)RPIR;RQS(0.999)PS(0.008)PS(0.84)T(0.153)RPIR 99.055 0.019731 27186700000.0 16087000.0 17955300.0 14970100.0 17818900.0 17206500.0 17287200.0 17092200.0 15687700.0 18937200.0 17600100.0 True False 16000389.379433738 18552931.306291927 17077759.9575582 20074770.912987005 19397645.7840843 16092176.553691618 16265384.987455236 16858395.834526505 14270380.805479307 16476846.54979628 0.9710832307066407 1.1260001269187832 1.0364701707906208 1.2183624367877124 1.1772668832874538 0.9766539067447091 0.9871661387570756 1.0231566934593406 0.8660868912234754 1.0 23.973936820428257 2.7181004145286756 23.777389569239585 0.9776572969051318 1.1093545111511254 0.4463796390385397 0.07504115172778456 425.7000366784743 494717.3438109354 0.024505288805151057 0.023134196575843768 522.5169877521031 -2.7181004145286756 0.13169721424599357 RQS(ph)PSPST(ph)RPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RQS(1)PS(0.012)PS(0.294)T(0.694)RPIR;RQS(0.998)PS(0.084)PS(0.411)T(0.507)RPIR 106.38 0.0021284000000000003 898860000.0 401480.0 466852.0 384988.0 455515.0 445679.0 505692.0 495444.0 433747.0 482667.0 471390.0 True False 399318.4762886215 482390.88660200656 439190.9640243156 513183.1522949954 502433.5789036074 470734.7023109243 471477.48094012396 466115.4036626375 363720.1852564419 441305.48662271723 0.9048572664359565 1.0930996808893387 0.9952084833239125 1.162875078264613 1.138516501910501 1.0666867206057804 1.0683698599541807 1.0562193713696808 0.824191396395203 1.0 18.751418158469903 1.3223705549161529 8.476453975482741 0.9129212671904904 1.0661565538980209 0.362238166106707 0.07866800661631385 0.23608169898663603 20.793355405075587 0.05079335865362281 0.018502493615996915 21.007315352112265 -1.3223705549161529 0.1532352867075305 RQS(ph)PSPSTR ddPTM_BT-474_Trastuzumab_2h_R1 3 RQSPSPSTR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RQS(0.983)PS(0.015)PS(0.001)TR;RQS(0.979)PS(0.021)PSTR;RQS(0.981)PS(0.019)PSTR 81.92 0.012201 283485000.0 49462.0 72070.0 69307.0 68503.0 63009.0 59578.9 71145.0 47488.4 62458.8 63626.0 True False 49195.7020877448 74468.80638276499 79064.82317275679 77175.4727762292 71032.8226663975 55460.35087664497 67703.44454970704 51032.22554920911 47066.66564504105 59565.334207040796 0.8259116270001507 1.2502037867179894 1.327363041361247 1.295644082310997 1.1925195016869594 0.9310843566137398 1.1366249421917 0.8567437122375275 0.790168749518703 1.0 15.862185335777287 2.262229767351186 1.2287350634488803 0.882242118686319 1.192142663361723 0.34971510817696894 0.15631651436877178 0.4856920237116912 1.4248882248184582 0.1004559617769577 0.0585976655173804 182.9067644682178 -2.262229767351186 0.30990054467540395 RQS(ph)SGS(ph)ATNVASTPDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQSSGSATNVASTPDNR 17 1 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 2 RQS(0.826)S(0.181)GS(0.939)AT(0.034)NVAS(0.019)TPDNR 176.48 3.432200000000001e-14 0.0 102850.0 91494.0 80514.0 89584.0 81941.0 101660.0 83659.0 80075.0 106790.0 112990.0 True False 102296.26702770927 94539.32248070912 91849.67135976652 100925.32521474549 92375.70064764192 94632.48348189933 79612.09456158485 86050.60311261096 80473.03541268695 105778.88146439429 0.9670764675474728 0.893744773738523 0.8683176650027594 0.954116018410702 0.8732905790721189 0.8946254882998843 0.7526274948216642 0.8134951128366397 0.7607665566001904 1.0 16.690692099546744 2.3730658349168983 7.617615045457694 0.8138301420877114 0.9077074600336287 0.20720836762431305 0.07060221732561715 0.2806716003623932 18.395830066520976 0.02269940269512145 0.018948015307916618 236.08360863749363 -2.3730658349168983 0.09387731794591725 RQS(ph)SGSATNVASTPDNR ddPTM_BT-474_Trastuzumab_2h_R1 3 RQSSGSATNVASTPDNR 17 1 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 RQS(0.69)S(0.265)GS(0.045)ATNVASTPDNR;RQS(0.839)S(0.137)GS(0.024)ATNVASTPDNR;RQS(0.872)S(0.122)GS(0.003)AT(0.003)NVASTPDNR 195.74 1.761e-11 2235775000.0 755908.0 741184.0 699881.0 809755.0 765487.0 778524.0 730771.0 654899.0 878147.0 840423.0 True False 751838.2753172745 765853.8613848102 798418.1613252952 912269.89997395 862967.2320530806 724706.46832837 695420.8149136831 703770.8888897392 661739.4384169391 786786.4846176703 0.9555810757001266 0.9733947854441958 1.0147837779817446 1.1594885242814725 1.096825185644145 0.9210967428863914 0.883874886655704 0.894487771014176 0.8410660977971726 1.0 19.58561264971653 2.6170680836870686 5.497317598764199 0.8964769688324244 1.0410901735194988 0.4970121322637948 0.06618392251039486 0.19685470188876403 8.076415354093387 0.023171073716466296 0.021758243249488638 414.06458200824915 -2.6170680836870686 0.1446132046870744 RQS(ph)STPSAPELGQQPDVNISEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQSSTPSAPELGQQPDVNISEWK 23 1 Q93100-4;Q93100-2;I3L213;Q93100-3;Q93100 Q93100-4 PHKB Phosphorylase b kinase regulatory subunit beta 1 RQS(0.492)S(0.492)T(0.015)PSAPELGQQPDVNISEWK 185.65 1.8195999999999998e-17 445530000.0 218140.0 210870.0 205550.0 232190.0 183890.0 240280.0 244790.0 227810.0 329650.0 302410.0 True False 216965.5584776322 217888.68047639306 234489.65332737193 261585.23019302264 207307.30149857685 223670.0091582799 232948.57251138927 244810.33899574063 248412.17458369012 283109.93489377317 0.7663650467054105 0.7696256952556185 0.8282635980802148 0.9239705073973229 0.7322501825178317 0.790046485801369 0.8228201973865553 0.8647182907501884 0.8774406828107175 1.0 18.111002851622853 0.9010872493115174 0.8631617392460551 0.9992865358666657 0.8032961943895698 0.6011007756106883 0.04872492221925993 0.5161864358554411 0.8109900715609475 0.0479849133912447 0.016757031819819204 7.963193140737838 -0.9010872493115174 -0.19599034147709593 RQS(ph)VS(ph)PPYKEPSAYQSSTR ddPTM_BT-474_Trastuzumab_2h_R1 6 RQSVSPPYKEPSAYQSSTR 19 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 RQS(1)VS(0.992)PPY(0.006)KEPS(0.002)AYQSSTR;RQS(1)VS(1)PPYKEPSAYQSSTR;RQS(1)VS(0.998)PPY(0.002)KEPSAYQSSTR;RQS(1)VS(0.998)PPY(0.002)KEPSAYQSSTR;RQS(1)VS(0.984)PPY(0.016)KEPSAYQSSTR;RQS(1)VS(0.999)PPY(0.001)KEPSAYQSSTR 121.1 1.9199e-05 13606400000.0 1448870.0 1379880.0 1090890.0 1209640.0 1268030.0 1597750.0 1482280.0 1431570.0 1844400.0 1558670.0 True False 1441069.4449045905 1425808.4716449261 1244477.82981414 1362780.2999728161 1429506.1042973537 1487301.3031989445 1410576.4535405126 1538401.022765165 1389872.3336937896 1459194.3461554765 0.9875788298531724 0.9771203372610977 0.852852694428917 0.9339265215516483 0.9796543606844818 1.019261969536492 0.9666816879169955 1.0542811016355522 0.9524929543180256 1.0 20.476740614034547 3.1025583484319115 3.727709720950021 1.0033144979012316 0.9347117298392441 0.3075109632899675 0.0425691371604067 0.2611807657292881 6.9591846940113955 0.012997137928315776 0.015796516246236174 1266.3633948276724 -3.1025583484319115 -0.0686027680619875 RQS(ph)VSGLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQSVSGLHR 9 1 Q8N1G4;J3KRP5 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 RQS(1)VSGLHR;RQS(1)VSGLHR 92.247 0.0036111 0.0 71440.0 64757.0 61547.0 78086.0 59844.0 62088.0 65685.0 63704.0 81163.0 68698.0 True False 71055.37497773023 66912.39759856694 70212.28262388594 87971.67959366208 67464.77867682217 57796.00269943105 62507.565608932615 68457.91596235751 61161.466178480296 64313.63482468322 1.1048259855227396 1.0404076488752012 1.0917169091015029 1.3678542634617041 1.0489965131146586 0.8986586259193868 0.9719177866299442 1.0644386085310131 0.9509875525649323 1.0 15.972837008372355 3.007868926676826 24.99236428839488 0.9862317840480378 1.1477118591538964 0.45407755894279933 0.08965125758883695 188.2049712207495 597748.9824820344 0.02714706854588835 0.032391312820921635 1018.2840159400436 -3.007868926676826 0.1614800751058586 RQSPEPS(ph)PVTLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQSPEPSPVTLGR 13 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 RQSPEPS(0.655)PVT(0.345)LGR;RQS(0.001)PEPS(0.805)PVT(0.195)LGR 156.57 5.0043e-05 717080000.0 254390.0 316940.0 288460.0 312010.0 290130.0 327050.0 289070.0 294750.0 353000.0 304220.0 True False 253020.39250538574 327489.1563057239 329072.66066073306 351510.4340088939 327076.3357647624 304441.8032928898 275086.5797453625 316745.7417101734 266007.8799576597 284804.41914415435 0.8884005145205242 1.1498738583124462 1.1554338294665725 1.2342169235477212 1.1484243704772434 1.068950419406224 0.9658789023428982 1.112151780025056 0.9340019398470754 1.0 18.119612006372773 2.498877722500762 5.472221321896234 1.0206084652317324 1.1249570721364839 0.22722004512175653 0.09451928116638028 0.2900635066886413 26.940696007962657 0.03220518198121024 0.028927102214701367 315.41164431496253 -2.498877722500762 0.10434860690475145 RQSPS(ph)PSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RQSPSPSTR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RQS(0.212)PS(0.52)PS(0.099)T(0.168)R 68.536 0.061219 132540000.0 63285.0 71320.0 68860.0 66554.0 61625.0 67670.0 62219.0 64615.0 60452.0 58923.0 True False 62944.28059162446 73693.84308614951 78554.88945815031 74979.72957606456 69472.5784700081 62992.13217804575 59209.229270338416 69436.89940832161 45554.41461529878 55162.48369348172 1.1410704590711218 1.3359413527432875 1.4240636787613092 1.3592522409378849 1.259417158517417 1.141937925204213 1.0733604672215815 1.2587703591114159 0.8258223989410709 1.0 15.751399795277354 1.9563419731721077 0.7127109121687256 0.9678998567939531 1.3223903157336485 0.5484123305631095 0.11652369250274505 0.5512547379760894 0.5374458508883393 0.1059420370473594 0.057273512346064745 90.43613077150759 -1.9563419731721077 0.35449045893969544 RQSS(ph)TPSAPELGQQPDVNISEWK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQSSTPSAPELGQQPDVNISEWK 23 1 Q93100-4;Q93100-2;I3L213;Q93100-3;Q93100 Q93100-4 PHKB Phosphorylase b kinase regulatory subunit beta 1 RQS(0.118)S(0.833)T(0.048)PS(0.001)APELGQQPDVNISEWK 218.98 1.3199e-32 432470000.0 258470.0 255920.0 243910.0 268410.0 264130.0 279360.0 316970.0 274870.0 360740.0 343980.0 True False 257078.42623871675 264438.1424930933 278250.4078962744 302390.6784793029 297765.3898788357 260048.50074270464 301636.95015701285 295382.1951615786 271840.4606683463 322026.90190390544 0.7983135095819738 0.8211678618452911 0.8640595125785666 0.9390230340741468 0.9246599837416394 0.8075365728926104 0.9366824584333111 0.9172593762049179 0.8441545071581161 1.0 18.296821689553653 7.999997504822711 0.02645955950381443 1.4892403764315185 0.04777730716643454 0.42889333300670685 0.04846247094184348 1774.1050437319232 3.6057783957059493 66.03059480201388 144.49038202397378 99999425.4658475 -7.999997504822711 -1.441463069265084 RQT(ph)IEER ddPTM_BT-474_Trastuzumab_2h_R1 4 RQTIEER 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 RQT(1)IEER;RQT(1)IEER;RQT(1)IEER;RQT(1)IEER 150.1 0.0011553 552329000.0 484177.0 408477.0 324094.0 396667.0 297455.0 317326.0 299554.0 310625.0 387617.0 432226.0 True False 481570.24482912215 422072.9100154392 369723.6181244526 446885.00152881583 335334.13109608594 295390.00052505574 285063.4286125932 333805.41482178925 292093.98415169463 404640.9666327042 1.19011737451252 1.0430800260482724 0.913707826474361 1.1043988087702867 0.8287201710855723 0.7300051771406121 0.7044848448855836 0.8249422138336948 0.7218596440751157 1.0 18.626282862958625 3.154182383334832 5.1872848807995755 0.7815862696340194 1.0503726195622156 0.6099410894031569 0.10182293216893945 0.13187420519284218 6.012289613227296 0.028553679974367988 0.034661645446631154 1426.206407727064 -3.154182383334832 0.26878634992819617 RQTESDWGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQTESDWGK 9 1 Q9NYV4-3;J3QSD7;A0A590UJE9;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 0 84.054 0.025257 96739000.0 129060.0 133380.0 118200.0 126190.0 132260.0 129970.0 140240.0 130230.0 171560.0 139830.0 False True 128365.155299914 137819.4726700873 134841.5325871825 142165.64106144765 149102.52703356236 120985.4798164712 133456.0554311749 139948.4238945407 129281.33678622147 130905.92968551406 0.9805908380796503 1.0528130620299798 1.0300643592778667 1.0860137612022902 1.1390051420265184 0.9242169556957767 1.0194805976458607 1.0690762766113817 0.9875896156637405 1.0 16.998170923393985 1.218917257830336 24.672118994969317 0.9937947441499563 1.0396478634925594 0.09095687952575349 0.055180268519385026 586.5821709829733 736726.6135097375 0.052389681314654275 0.013174347180513605 16.554545347571963 -1.218917257830336 0.045853119342603166 RQTIEER ddPTM_BT-474_Trastuzumab_2h_R1 3 RQTIEER 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;; 145.16 0.0036969 402534000.0 360745.0 489310.0 412924.0 473698.0 470590.0 397480.0 350521.0 374481.0 416853.0 450690.0 False True 358802.7890025377 505596.3875558593 471060.1100002512 533668.1182306494 530516.8470945425 370003.14316727687 333564.96010974614 402426.67379598774 314125.1636940236 421926.5783448779 0.8503915311759679 1.198304192021273 1.1164504304234943 1.264836456437772 1.2573676898375055 0.87693727334911 0.7905758424089937 0.9537836544325227 0.7445019579621299 1.0 18.68663244428517 2.7218604471435413 23.527383564198978 0.870428779943774 1.146757876672511 0.5156646539795736 0.12790575452678055 293.66336879172366 413715.1498282427 0.04049156952164663 0.03829111101831347 527.0604726411086 -2.7218604471435413 0.27632909672873707 RQVDEGVWPPPNNLLSQS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 RQVDEGVWPPPNNLLSQSPK 20 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;Q9C0H9-4 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 RQVDEGVWPPPNNLLS(0.001)QS(0.999)PK;RQVDEGVWPPPNNLLSQS(1)PK 228.46 1.8578e-25 888100000.0 695040.0 563900.0 507500.0 482100.0 476880.0 631020.0 627620.0 577130.0 868590.0 608400.0 True False 691297.9818662032 582669.0706152512 578951.5887309224 543133.8105691737 537607.8413107906 587399.0726613037 597259.6228587705 620198.371206759 654537.6330097001 569571.3911225541 1.2137161252143323 1.0229956765681 1.0164688707237932 0.9535833769647818 0.9438813986974183 1.0313001702975522 1.0486123990210365 1.088886100800157 1.1491757542802286 1.0 19.119517157745744 -0.3387380270053874 8.003867929671907 1.0000000122706094 1.046367302321713 0.033917412396482716 0.0782096412325361 0.0 0.0 0.07775360249367533 0.018326699861653698 0.4584183281925703 0.3387380270053874 0.04636729005110363 RQVEEAER ddPTM_BT-474_Trastuzumab_2h_R1 3 RQVEEAER 8 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 150.35 0.00078659 438630000.0 346552.0 430080.0 441650.0 404380.0 311588.0 326308.0 412450.0 281827.0 465305.0 383830.0 False True 344686.20253754687 444394.95281114953 503830.48110938293 455574.4665379843 351266.8848732313 303751.0960064096 392498.21778799244 302858.36182850896 350636.8175175611 359333.6407866042 0.9592372197131525 1.236719589733766 1.4021244434739424 1.2678313823907577 0.9775507912487285 0.8453177257255378 1.0922946622219643 0.8428333099164685 0.9757973585495496 1.0 18.454964481093583 3.195252211085824 6.156412879431944 0.943259970366163 1.2312799158520962 0.5168027174981438 0.1230598521445324 0.1411499462732153 13.127397470774348 0.03593028715251872 0.04380256006183187 1567.6612054358566 -3.195252211085824 0.2880199454859331 RQVEEEILALK ddPTM_BT-474_Trastuzumab_2h_R1 1 RQVEEEILALK 11 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 84.352 0.025697 304250000.0 479080.0 569520.0 495500.0 483960.0 488340.0 556070.0 586570.0 547980.0 753440.0 626860.0 False True 476500.68651079154 588476.1289178901 565262.0930367929 545229.286378463 550527.2043820497 517630.18974798115 558195.368184998 588873.0501860582 567764.8075787515 586853.2581181533 0.811958832841405 1.0027653775067056 0.9632085793464005 0.9290726068844454 0.9381002776527315 0.8820436499029622 0.9511668555354847 1.0034417327329521 0.9674732136605797 1.0 19.162640278877504 1.9553595204327126 5.907289967239366 0.9881164917198886 0.927017026803975 0.2871102399617679 0.048220358799014304 0.2892369137999809 25.46544058175559 0.020240984356022364 0.012606285540574974 90.23177909922678 -1.9553595204327126 -0.06109946491591356 RQVS(ph)ASELHTSGILGPETLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 RQVS(0.714)AS(0.286)ELHTSGILGPETLR;RQVS(0.537)AS(0.461)ELHT(0.002)SGILGPETLR 151.19 3.7024e-08 621070000.0 70855.0 170570.0 198364.0 257550.0 211610.0 145937.0 194590.0 124160.0 131475.0 175586.0 True False 70473.52455273051 176247.31933825777 226291.92698920314 290155.8035928038 238557.27918926446 135848.7186887463 185176.9382940125 133425.449671705 99074.74792474031 164379.9511532622 0.4287233574307576 1.0721947421308748 1.3766394587757016 1.7651532413601492 1.4512553235086552 0.8264311902738409 1.126517783919767 0.8116893132989418 0.6027179545294209 1.0 17.326674823726513 2.1993730872873534 1.5821943860824084 0.8093875338602471 1.2279116983011167 0.1648321622758665 0.3516534444149181 0.6871427890326606 3.3667899011863724 0.21420624460333296 0.12491428111747147 158.2607018117148 -2.1993730872873534 0.4185241644408696 RQYHES(ph)EEES(ph)EEEEAA ddPTM_BT-474_Trastuzumab_2h_R1 2 RQYHESEEESEEEEAA 16 1 Q8N9N8;E9PNH5 Q8N9N8 EIF1AD Probable RNA-binding protein EIF1AD 2 RQYHES(1)EEES(1)EEEEAA;RQYHES(1)EEES(1)EEEEAA 81.01 0.0093371 659670000.0 717010.0 732290.0 602880.0 754930.0 736220.0 814740.0 763990.0 684990.0 949210.0 793240.0 True False 713149.6978273003 756663.8299713469 687760.2636731 850504.0605952839 829973.253082182 758418.9414916651 727032.8849747807 736107.4321087413 715289.9142623518 742614.7440730679 0.9603225676827277 1.0189184042067667 0.9261333270881428 1.1452830251261485 1.1176363783594885 1.021281825528961 0.9790175737518698 0.991237297648259 0.9632045686827523 1.0 19.502254433569586 2.333637403759006 5.0219543129578685 0.9835464896890576 1.0362477620547788 0.13024497261052626 0.06125746744295705 0.4585432779929403 19.073499606872762 0.023327270714649462 0.019215697044696896 215.5943641417554 -2.333637403759006 0.0527012723657212 RRDEDMLYS(ph)PELAQR ddPTM_BT-474_Trastuzumab_2h_R1 6 RRDEDMLYSPELAQR 15 2 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR 209.9 1.125e-09 7594680000.0 1548568.0 1815898.0 1873152.0 1962919.0 1857391.0 1717445.0 1841512.0 1715643.0 2049826.0 1920900.0 True False 1540230.6819500779 1876339.0671964798 2136875.5198709443 2211424.3441373813 2093918.7342310273 1598722.069580668 1752431.0293010077 1843672.9925186287 1544673.8485611612 1798306.517434769 0.8564895177865292 1.04339224098071 1.1882710200701123 1.2297260354101995 1.1643836653708737 0.8890153341940825 0.9744896169318225 1.0252273317390705 0.8589602682220118 1.0 20.778207515367846 2.7413963913358526 24.98200092567379 0.9593266890866916 1.1060098190652918 0.31955510278566934 0.1062570932224247 330.0385926353206 2907513.752307453 0.03534871855995132 0.03601563437987955 551.3106617389824 -2.7413963913358526 0.14668312997860022 RRDEDMLYSPELAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRDEDMLYSPELAQR 15 2 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 0 ; 148.33 1.9974e-06 365630000.0 177372.0 251420.0 237040.0 272490.0 227650.0 242690.0 248140.0 202030.0 291880.0 264540.0 False True 176417.0488598817 259788.36271340022 270413.17161138484 306987.2060609708 256639.87811273613 225913.41153081003 236136.520213147 217106.5044875532 219950.08499161978 247656.8307159114 0.7123447730066882 1.0489852509313784 1.0918865868940129 1.2395668844406622 1.0362721568020437 0.9122034343965123 0.9534827669825937 0.8766425051146574 0.8881244436335608 1.0 17.91798288747079 2.748518906161846 8.466707545097375 0.9173436979666028 1.0427618462008172 0.12516723200823188 0.12691428758689818 0.30108770229684645 189.74245411453498 0.04071602183383869 0.04160615740242231 560.4268139196646 -2.748518906161846 0.1254181482342145 RRDELSEEINNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RRDELSEEINNLR 13 2 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;A0A087WYS2;B4DSP0;A0A087WZG9;Q86TG7-2 A0A087WXK2;B4DSP0 PEG10 Retrotransposon-derived protein PEG10 0 ;;; 248.77 1.0777e-17 2306230000.0 672020.0 911960.0 908000.0 1004820.0 891100.0 994860.0 998130.0 746520.0 968800.0 960110.0 False True 668401.918988441 942314.0373085396 1035838.5075225183 1132030.1089734836 1004576.3030365005 926087.6698485381 949846.6386731212 802229.1131517501 730052.2212549042 898834.9578084738 0.7436314233017024 1.0483727063821324 1.152423477217758 1.2594415683760039 1.117642671003633 1.0303200401845867 1.056753111816015 0.8925210420250379 0.8122205471791025 1.0 19.777696709853803 1.7481528218020337 4.135109761803684 0.8872521130347579 1.0719191735997426 0.22471530983567478 0.13122624677113892 0.27079289131709644 10.007892505889396 0.07228618688102514 0.03649466699437194 55.995460657203445 -1.7481528218020337 0.18466706056498472 RRDS(ph)DAPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRDSDAPGK 9 2 Q86YI8 Q86YI8 PHF13 PHD finger protein 13 1 RRDS(1)DAPGK 68.46300000000001 0.045676 84036000.0 104930.0 75635.0 66268.0 68872.0 69081.0 63763.0 82703.0 78365.0 111560.0 93941.0 True False 104365.06853881889 78152.46525267698 75597.95838821826 77591.18813839473 77878.05587483381 59355.21389195697 78702.33993385934 84212.99422940698 84067.53282741227 87945.60495306365 1.1867002176461037 0.8886454905209504 0.8595990490777191 0.8822633965597821 0.8855252734505281 0.6749082449729545 0.8948979312367297 0.9575577344012954 0.9559037415488688 1.0 16.424323860932255 4.73833760609267 6.808279596418123 0.8831192762913258 1.191717482251986 0.5373001273028659 0.08279517893915236 0.08775296944706248 28.5854705431218 0.020448073876624784 0.1250823805216578 54744.1360242139 -4.73833760609267 0.30859820596066023 RRDS(ph)DGVDGFEAEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 RRDSDGVDGFEAEGK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK 228.58 4.550600000000001e-13 22070700000.0 8946480.0 7753400.0 7212440.0 7151390.0 7373720.0 9336900.0 8767880.0 8753860.0 12445040.0 9540710.0 True False 8898313.145727372 8011467.23197073 8227888.8603477 8056755.2407514695 8312719.534537425 8691462.07969847 8343744.147845751 9407117.484400382 9378126.646992283 8931813.719587214 0.9962492977449388 0.8969586114857959 0.9211890349105886 0.9020290272157416 0.9306866214985952 0.9730903881972303 0.9341601168358624 1.0532146974551027 1.0499689023323804 1.0 23.090521732191885 1.7547757591036972 6.956951522557105 1.0378629638900005 0.9339757934827566 0.6712813996700673 0.03135372660230331 0.08045966605222837 11.572259058589541 0.015047834556214772 0.008075091822877111 56.85592886948658 -1.7547757591036972 -0.10388717040724393 RRDS(ph)DGVDGFEAEGKK ddPTM_BT-474_Trastuzumab_2h_R1 3 RRDSDGVDGFEAEGKK 16 3 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK 141.97 8.5829e-06 10869800000.0 1730080.0 1537360.0 1334100.0 1416670.0 1456400.0 1833400.0 1893750.0 1801980.0 3020320.0 1901540.0 True False 1720765.4415099586 1588530.098246256 1521929.6837949248 1596020.276745554 1641863.9072408923 1706661.3733593754 1802142.077672469 1936452.8978690316 2276002.6062145047 1780182.0892096995 0.9666232751919672 0.8923413553449882 0.8549292193309145 0.8965488903745218 0.9223011045851985 0.9587004518830076 1.0123358102499045 1.087783609107486 1.2785223601619997 1.0 20.76359338678778 1.993715495278477 1.5300327517607222 1.1417733050678258 0.9043421631757184 0.644804148499891 0.06948761666168414 0.22539973201365587 0.9838340902897456 0.04438110421707566 0.02124877478737506 98.56335891444712 -1.993715495278477 -0.23743114189210746 RRDS(ph)EEFGVK ddPTM_BT-474_Trastuzumab_2h_R1 4 RRDSEEFGVK 10 2 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 RRDS(1)EEFGVK;RRDS(1)EEFGVK;RRDS(1)EEFGVK;RRDS(1)EEFGVK 169.04 3.7436e-06 1921850000.0 2018910.0 1747770.0 1548490.0 1478140.0 1462640.0 1910910.0 1926660.0 1726050.0 2429780.0 1968400.0 True False 2008040.4128819867 1805943.4679007248 1766503.9322836394 1665272.3724428902 1648898.5342535116 1778813.2894982905 1833460.095244061 1854856.6157043045 1830993.2763839185 1842775.026767974 1.0896828878801716 0.9800129921817707 0.9586107401194243 0.90367643811822 0.8947910137166876 0.9652905339281348 0.9949451607555967 1.006556193111386 0.993606517229225 1.0 20.813448521151386 -0.5144920324991002 8.012088221091075 1.000008702787906 0.9742418714749419 0.01697458528159279 0.05179202945275331 0.0 0.0 0.05305904093212505 0.012506135882120076 0.30584963567075707 0.5144920324991002 -0.0257668313129642 RRDS(ph)GIGEETATGLGSHVEVTPHTAPPGVSAGPDAISEVLSTLSLEVNK ddPTM_BT-474_Trastuzumab_2h_R1 3 RRDSGIGEETATGLGSHVEVTPHTAPPGVSAGPDAISEVLSTLSLEVNK 49 2 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9;H0YAC6 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 RRDS(0.199)GIGEET(0.199)AT(0.199)GLGS(0.199)HVEVT(0.199)PHT(0.006)APPGVS(0.001)AGPDAISEVLSTLSLEVNK;RRDS(0.229)GIGEET(0.229)AT(0.229)GLGS(0.229)HVEVT(0.04)PHT(0.04)APPGVS(0.001)AGPDAIS(0.002)EVLSTLSLEVNK;RRDS(0.165)GIGEET(0.165)AT(0.165)GLGS(0.165)HVEVT(0.165)PHT(0.165)APPGVS(0.006)AGPDAIS(0.001)EVLSTLSLEVNK 114.92 1.4039e-08 668000000.0 98068.0 94698.0 84880.0 92951.0 95357.0 110578.0 99585.0 83491.0 120488.0 113425.0 True False 97540.01278437917 97849.96568385017 96830.36620981422 104718.58706951936 107500.14872478007 102934.00313261329 94767.69309835666 89721.52237870757 90795.34685648314 106186.11939197205 0.918575924451322 0.9214948831744187 0.9118928798252595 0.9861796218671907 1.012374774973718 0.9693734333830017 0.892467806913013 0.844945863851681 0.8550585272009432 1.0 16.696235664371994 -0.45946091215029555 5.277970302342304 0.9999999967678362 0.9219298088079648 0.1677707122693216 0.050929079500571295 3478062.1551593617 1317954.4372890573 0.062419683047361126 0.01396985129989464 0.3471675206347072 0.45946091215029555 -0.07807018795987142 RRDS(ph)YYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RRDSYYDR 8 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 RRDS(1)YYDR;RRDS(1)YYDR;RRDS(0.999)YYDR;RRDS(0.994)Y(0.003)Y(0.003)DR 151.79 0.0003682 2851010000.0 1316658.0 855297.0 699027.0 1118666.0 672343.0 809568.0 689600.0 774582.0 1272544.0 1079922.0 True False 1309569.2596224572 883765.043607046 797443.925548396 1260289.0009005896 757961.8957608223 753604.4696780858 656241.4134721768 832385.242087699 958942.5824159781 1011000.4533922599 1.2953201506768812 0.8741490081846208 0.7887671295029521 1.2465760986277301 0.7497146942096764 0.7454046802347906 0.6491010080858594 0.8233282579594852 0.9485085582290201 1.0 19.947352213554833 4.7370721927871955 5.330062800748683 0.8529478960826004 1.3128091252319352 0.3877206688617111 0.1595268122022467 0.15469593205065338 15.905929380412239 0.03893737468569427 0.2607238436012893 54584.858998068325 -4.7370721927871955 0.4598612291493348 RRDSLDS(ph)STEASGSDVVLGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRDSLDSSTEASGSDVVLGGR 21 2 Q9Y2I9 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 RRDS(0.033)LDS(0.48)S(0.48)T(0.008)EASGSDVVLGGR;RRDS(0.227)LDS(0.487)S(0.227)T(0.058)EASGSDVVLGGR 230.88 5.9568e-26 2739500000.0 207797.0 225020.0 265728.0 223128.0 245102.0 253997.0 247840.0 237173.0 259780.0 268015.0 True False 206678.24404041716 232509.65467253773 303140.19265081873 251375.98192217076 276314.28686662787 236438.78523462484 235851.03235925827 254872.05360009096 195760.69987365688 250910.05324081442 0.823714480033428 0.9266653594361297 1.2081628007143888 1.0018569550137122 1.101248368878354 0.9423248777030844 0.9399823933435499 1.0157905205793964 0.7802026955283965 1.0 17.9368107509635 RRDSLDSS(ph)TEASGSDVVLGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRDSLDSSTEASGSDVVLGGR 21 2 Q9Y2I9 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 RRDS(0.28)LDS(0.28)S(0.421)T(0.019)EASGSDVVLGGR;RRDS(0.03)LDS(0.262)S(0.701)T(0.007)EASGSDVVLGGR 155.61 1.795e-08 2547200000.0 216950.0 238700.0 277396.0 252510.0 238210.0 244240.0 259004.0 241976.0 258294.0 295440.0 True False 215781.96530541108 246644.98520280304 316450.9456307447 284477.7401095665 268544.6315187126 227356.26367911752 246474.9870286362 260033.4778492308 194640.90466227705 276584.76626109035 0.7801657633657139 0.8917518796750188 1.1441372925507454 1.0285372689001437 0.9709306667497803 0.8220129646059315 0.891137246495958 0.9401583513235308 0.7037296641223546 1.0 18.077362172339498 2.7646896093339093 21.430670159949265 0.8754565032124484 0.9728331576174364 0.13744372735893295 0.113329692889088 258.769205091904 212237.17088572736 0.03554047737110839 0.03767065962921615 581.6873366981573 -2.7646896093339093 0.097376654404988 RREDS(ph)YHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RREDSYHVR 9 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 RREDS(1)YHVR;RREDS(1)YHVR 123.67 0.00028760000000000005 209200000.0 41708.0 35985.0 29680.0 44777.0 33199.0 43904.0 34049.0 28668.0 49263.0 40006.0 True False 41483.44876219441 37182.73897160812 33858.68601681534 50445.76360891078 37426.69586411039 40869.019818899345 32401.91979018874 30807.351733154355 37122.79374038016 37452.78282914022 1.1076199317802928 0.9927897518653277 0.9040365884500182 1.346916298290693 0.9993034705819102 1.091214503481464 0.8651405140709159 0.8225650914565588 0.9911891970680665 1.0 15.19278529782341 2.2404593798875756 24.992247878126093 0.8946905129257993 1.071304003576845 0.274625541479634 0.11978386619802298 58.02300330734631 763733.1612892832 0.042634275310341654 0.03399370023250685 173.96399797002357 -2.2404593798875756 0.1766134906510458 RREEEGLQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RREEEGLQLR 10 2 C9JYI4;P52294;C9J352;C9JWD9;F2Z3G4;C9J4U1 C9JYI4 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed 0 ;; 215.87 4.4906e-09 821950000.0 202333.0 260646.0 246672.0 248165.0 243292.0 238970.0 258878.0 229469.0 305551.0 289437.0 False True 201243.66160930964 269321.44454616576 281401.27348854026 279582.6635550691 274273.79409533826 222450.56637487165 246355.08213000334 246593.14199997208 230252.0502236346 270964.8828605175 0.74269277806343 0.993934866035029 1.0385156575193364 1.031804050043591 1.0122115869772101 0.8209571809693909 0.909177158048254 0.9100557216003113 0.8497486751527124 1.0 18.047746364370823 2.7554147647404608 24.867531507990172 0.8949289522225373 0.9734295203879824 0.11214498360208047 0.09043925890927688 1502.956247991969 2217541.779685306 0.027579797786785824 0.029175269870185358 569.3964625925018 -2.7554147647404608 0.07850056816544504 RREEGPPPPSPDGASS(ph)DAEPEPPSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 Q9NTJ3;E9PD53;Q9NTJ3-2;C9JR83;C9JWF0;C9IYK2;C9JJ64;F8WCB7 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 RREEGPPPPSPDGAS(0.107)S(0.893)DAEPEPPSGR;RREEGPPPPS(0.001)PDGAS(0.202)S(0.797)DAEPEPPSGR;RREEGPPPPSPDGAS(0.119)S(0.881)DAEPEPPSGR 191.12 3.2493e-18 1728240000.0 201160.0 245873.0 212843.0 236123.0 237814.0 261333.0 269229.0 232068.0 272784.0 287703.0 True False 200076.9769109772 254056.73417163297 242809.4443354792 266016.1475897631 268098.2032659879 243267.66482171157 256205.36471534343 249386.09257742646 205560.03831832967 269341.54822506936 0.7428374056266553 0.9432511836582154 0.9014927178356487 0.9876535920387319 0.9953837610005773 0.9031939796322485 0.9512285289949066 0.9259102215044537 0.7631946859775155 1.0 18.03907726942601 4.7409310792065416 24.54767211609295 0.9306843677243727 0.7428373204219744 0.42624580839540405 0.06519172471617105 158.03485909817033 1636420.219346155 0.015042150097822253 0.10066045675616339 55072.0292367352 -4.7409310792065416 -0.18784704730239832 RRES(ph)ASSSSSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRESASSSSSVK 12 2 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 RRES(0.994)AS(0.005)S(0.001)SSSVK 100.23 0.0026398000000000003 227590000.0 73236.0 70084.0 68055.0 64809.0 65959.0 79481.0 79408.0 75304.0 99614.0 78015.0 True False 72841.7055132846 72416.70357332734 77636.55245533586 73013.81275498353 74358.48768037757 73986.66554814906 75566.73167198185 80923.5668659639 75065.46445921349 73036.01590799823 0.997339526365206 0.9915204529303594 1.0629899713195312 0.9996959972044113 1.0181071181928274 1.013016176037701 1.0346502438902405 1.107995361739083 1.0277869558735475 1.0 16.156320448451243 1.9926173093147506 17.741599529878492 1.0607759128929397 1.0153325037230336 0.11403115420567578 0.03229739718246417 9.243207985777152 22211.082730619368 0.01214788711371145 0.00853010382628587 98.31443988713187 -1.9926173093147506 -0.04544340916990608 RRES(ph)ASSSSSVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRESASSSSSVKK 13 3 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 RRES(0.999)ASSSSSVKK 140.22 0.0002169 111130000.0 165600.0 140800.0 127770.0 141040.0 132330.0 155620.0 169370.0 151240.0 265700.0 178460.0 True False 164708.4279998898 145486.4428846028 145758.90540325126 158895.64953884293 149181.44111864 144862.3556900763 161176.9260437684 162526.29678115886 200221.7951975926 167070.53001270728 0.9858616476967074 0.8708085314240469 0.8724393547573287 0.9510692850902994 0.8929249288147548 0.8670730599768742 0.9647238566341376 0.9728005098732685 1.1984267673201483 1.0 17.35009774970263 1.4970573410849155 3.129545871007932 1.0984740337065726 0.9108120042388733 0.5777265794611904 0.06098729235946563 0.14057627912350784 2.8176228732189137 0.040942210680822544 0.01485124132822229 31.40923371179198 -1.4970573410849155 -0.18766202946769928 RRES(ph)EKS(ph)LENETLNK ddPTM_BT-474_Trastuzumab_2h_R1 4 RRESEKSLENETLNK 15 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 RRES(1)EKS(0.996)LENET(0.004)LNK;RRES(1)EKS(0.999)LENET(0.001)LNK;RRES(1)EKS(1)LENETLNK;RRES(0.99)EKS(0.523)LENET(0.486)LNK 187.59 4.7967e-07 3794120000.0 2892310.0 1822060.0 1344934.0 1394460.0 1647850.0 2590430.0 2064230.0 2350700.0 3663450.0 2322520.0 True False 2876738.124325853 1882706.1656414727 1534289.0168241083 1570998.4930227941 1857693.9299278364 2411359.671316311 1964375.3087756245 2526121.170612735 2760641.835214987 2174294.7851905897 1.3230672050173224 0.865892784393742 0.7056490349304769 0.7225324292377802 0.8543891760127634 1.1090307016971213 0.9034539944423569 1.1618117229634555 1.2696722882371263 1.0 21.052116119763806 1.7223231090143778 5.092449167757692 1.1631825994119602 0.9113223677428021 0.22577286908638383 0.18173569389583377 0.22223329944279901 13.939670703133045 0.0975673429749848 0.049167588316647144 52.762225900951584 -1.7223231090143778 -0.25186023166915816 RRES(ph)EKSLENET(ph)LNK ddPTM_BT-474_Trastuzumab_2h_R1 2 RRESEKSLENETLNK 15 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 RRES(0.975)EKS(0.111)LENET(0.914)LNK;RRES(0.831)EKS(0.231)LENET(0.939)LNK 145.02 7.828300000000001e-06 1844990000.0 1049160.0 583280.0 603860.0 584446.0 600410.0 925220.0 776000.0 828710.0 1391630.0 951460.0 True False 1043511.4391326347 602694.1221997938 688878.2391547874 658436.8036754011 676868.6545911178 861261.7191336097 738461.9153921254 890552.5483041131 1048681.4333866239 890737.0082141119 1.1715146328373947 0.6766240951503393 0.7733800580891521 0.7392044987504647 0.7598973079025978 0.9669091002072555 0.8290459569797248 0.9997929131625859 1.1773188087123307 1.0 19.76464001061547 1.6039167114487087 3.1313936766005965 1.0912071782610273 0.832259478634841 0.34077179535251 0.13841693052405377 0.2137457377965636 4.912564750861654 0.08690141794761518 0.03566785390199142 40.1713763206715 -1.6039167114487087 -0.25894769962618636 RRESAS(ph)SSSSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRESASSSSSVK 12 2 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 RRES(0.407)AS(0.577)S(0.015)S(0.001)SSVK 63.894 0.053119000000000006 64065000.0 16869.0 18865.0 17459.0 15418.0 16430.0 19837.0 18062.0 18149.0 23188.0 17672.0 True False 16778.17917832209 19492.910120866673 19917.075443651574 17369.91721915685 18522.2631117604 18465.71488127519 17188.27205645948 19503.370538754647 17473.62810328108 16544.157830239616 1.0141452560162796 1.1782352611045146 1.2038736361210782 1.0499124462780391 1.1195651843882424 1.116147166314101 1.0389330320001264 1.1788675337167145 1.0561811778259615 1.0 14.014034233601798 1.000981496919639 24.358907200559393 0.999999994936575 1.1155447679862343 0.262503941275569 0.060180733576704754 22.208854349714947 551155.9470373323 0.055179814481134265 0.013794953652033972 10.022625358560775 -1.000981496919639 0.11554477304965927 RRESASS(ph)SSSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRESASSSSSVK 12 2 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 RRES(0.318)AS(0.04)S(0.329)S(0.146)S(0.021)S(0.146)VK 128.85 0.00019275 75374000.0 36637.0 28314.0 32446.0 26889.0 31993.0 35773.0 30184.0 30649.0 46772.0 37331.0 True False 36439.75046275334 29256.41437382557 37014.114774312344 30293.14464300871 36067.11891263238 33300.09671058413 28723.884605922543 32936.18401246851 35245.66731269029 34948.503619322946 1.0426698338696794 0.8371292428569035 1.0591044233964664 0.8667937538321298 1.0320075304366094 0.9528332621420901 0.8218916872321015 0.9424204358282788 1.0085029017723963 1.0 15.092943064987121 3.699816228744588 24.999527932687368 0.9402722629562104 0.965384341782424 0.021178416381906984 0.08210938364921523 2866.2860448406173 1849448.1417635393 0.020998423527312782 0.032530761903806396 5009.752016377103 -3.699816228744588 0.02511207882621369 RRET(ph)PS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 RRETPSPR 8 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RRET(1)PS(1)PR;RRET(1)PS(1)PR;RRET(1)PS(1)PR;RRET(1)PS(1)PR;RRET(1)PS(1)PR;RRET(1)PS(1)PR 75.416 0.04243 3947077000.0 2016393.0 2153425.0 1665806.0 1848390.0 1844842.0 1797121.0 1756562.0 1735372.0 1881616.0 1779538.0 True False 2005536.9641303218 2225100.4493521005 1900337.0053546864 2082395.9844803028 2079771.6934647746 1672890.2552377942 1671590.3853415234 1864874.2706804625 1417916.9491626425 1665966.3613008666 1.203828006805793 1.3356214753427764 1.1406814984372264 1.2499628040834319 1.248387567586172 1.0041560826783569 1.0033758328927274 1.1193949133668455 0.8511077907092103 1.0 20.66792783985094 2.738159809784502 24.99989171558394 1.0132030426609615 1.2367616637312355 0.7097278386043687 0.0763564317432277 20.930845460042704 1305508.2209321656 0.023584879095074566 0.02349681454598031 547.2172884753569 -2.738159809784502 0.22355862107027402 RRET(ph)PS(ph)PRPMR ddPTM_BT-474_Trastuzumab_2h_R1 10 RRETPSPRPMR 11 3 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR 98.943 0.0097427 20033620000.0 4496185.0 5594016.0 3795141.0 5591844.0 5780570.0 5669769.0 5655798.0 4923588.0 6249802.0 5768982.0 True False 4471978.039533114 5780209.440905913 4329463.864843076 6299770.877055322 6516691.325377283 5277831.214230615 5382205.443493493 5291011.138033274 4709622.040156212 5400800.629686019 0.8280213150162324 1.070250475297021 0.8016337135360565 1.1664512928746205 1.2066157912879922 0.9772312618282016 0.9965569574832449 0.9796716266382289 0.8720229393896383 1.0 22.364741861574057 5.28881203012345 2.2892719946377613 1.0096616574877215 5.554328719347154e-19 0.17220238033914959 0.1152826649358069 17.468751072333728 16.722981510917272 0.029346886220183124 67.36916454978378 194451.8279603055 -5.28881203012345 -1.0096616574877215 RRFS(ph)DSEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RRFSDSEER 9 2 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 RRFS(0.989)DS(0.011)EER;RRFS(0.974)DS(0.026)EER 90.793 0.0088125 588620000.0 173690.0 212325.0 182362.0 185571.0 196125.0 202835.0 205503.0 168714.0 190792.0 195242.0 True False 172754.872338773 219392.1092718272 208036.98448108073 209064.2695729769 221100.35622605015 188813.49387223128 195562.03479230378 181304.29539233274 143773.86808181828 182781.4884049139 0.9451442476279162 1.2002972028863788 1.138173161278885 1.1437934519377533 1.2096430451219922 1.0330011836535369 1.0699225424791228 0.9919182570102026 0.7865887806062589 1.0 17.47976044013494 1.7029259089445299 1.8060747701860156 0.8947570516476174 1.1217813111789736 0.4789631772012316 0.08886186555056 0.2555296103747429 1.691557668977561 0.0632319250299894 0.0247319612327401 50.45752092053521 -1.7029259089445299 0.2270242595313562 RRGDDWNDREWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRGDDWNDREWDR 13 3 C9JUL9;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5 C9JUL9;Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 95.631 0.0020184 193530000.0 24006.0 47745.0 40432.0 35792.0 41856.0 43482.0 47768.0 39027.0 38762.0 46231.0 False True 23876.75436331733 49334.16346253802 46124.47415875601 40323.26353016354 47186.113500051324 40476.19168561817 45457.27934851936 41939.392915090495 29209.624484189273 43280.4979996496 0.5516746679650183 1.1398705131104876 1.0657103381557542 0.9316728178703026 1.090239615552329 0.9352062373669053 1.050294738958119 0.96901364017184 0.6748911365212517 1.0 15.40142947893348 -0.4018164258410244 6.232200100209637 0.9999883045251334 0.9551776903316254 0.0 0.1778021075703141 0.0 0.0 0.15947958689556818 0.037589699118228515 0.39644557445415957 0.4018164258410244 -0.04481061419350807 RRGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 RRGDS(1)ES(0.858)EEDEQDS(0.143)EEVR;RRGDS(1)ES(0.997)EEDEQDS(0.003)EEVR 182.4 3.3728e-13 2101590000.0 658640.0 720970.0 577770.0 715110.0 709140.0 831500.0 773570.0 688920.0 884570.0 739400.0 True False 655093.9554217828 744967.0506144312 659114.9939331335 805642.8526781201 799444.7755979167 774020.3621404608 736149.4637756263 740330.7086648765 666579.5761307284 692210.8589678123 0.9463791949155836 1.07621404802185 0.9521881741583345 1.1638691335750664 1.1549151031666938 1.1181858130550544 1.0634757519888274 1.069516172815922 0.9629718567615309 1.0 19.400852048208492 5.628503690645994 1.0533725191089964 1.0744591613128964 0.38441453344534826 0.18540997761509204 0.07005335145459445 16.018684436316647 3.560376180033325 0.02072509847142762 19.36589243632546 425112.3194049999 -5.628503690645994 -0.6900446278675482 RRGS(ph)QEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RRGSQEK 7 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 RRGS(1)QEK;RRGS(1)QEK;RRGS(1)QEK;RRGS(1)QEK 91.095 0.013116999999999998 1684190000.0 1173240.0 987440.0 834690.0 1025620.0 1063740.0 1465250.0 1052870.0 1093440.0 1510300.0 1109260.0 True False 1166923.4061992192 1020306.3434799138 952207.0967444609 1155463.3868408126 1199200.9837190497 1363960.7163274933 1001938.6557460141 1175038.0451758143 1138106.8019831562 1038466.077114735 1.12369910959575 0.982512925520614 0.9169361597155534 1.1126635836301384 1.1547810854360299 1.3134379123072655 0.964825599821028 1.1315131722362368 1.0959499082967274 1.0 19.986022658710695 3.623023590059347 9.34685029942995 1.1182041760053085 1.0053349427592593 0.17869168012027858 0.0999878343182562 0.5425945029835949 40.49745982036892 0.026398831148820173 0.040921050820410296 4197.817851287012 -3.623023590059347 -0.11286923324604925 RRGS(ph)SGSVDETLFALPAASEPVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 RRGS(0.73)S(0.128)GS(0.128)VDET(0.013)LFALPAASEPVIR 191.99 6.4429e-18 287950000.0 48579.0 66363.0 76767.0 78688.0 74822.0 68884.0 75418.0 67254.0 109030.0 90967.0 True False 48317.456061634264 68571.85233771939 87575.12632927434 88649.89273193767 84350.13819526091 64122.211215494244 71769.74321526194 72272.83498889225 82161.0174271492 85161.40817923308 0.567363282203413 0.8051986669055677 1.0283428632950888 1.0409632088910816 0.9904737368566668 0.7529491654311404 0.8427496063030491 0.8486571151663536 0.9647681876540936 1.0 16.377912185098225 4.637342340718657 3.2420319178184465 0.919236787200425 0.5516844110617052 0.6043859138838954 0.08969988019422719 0.20858975774928573 3.5264876448521068 0.024233175878768807 0.16356667101051595 43385.27361362809 -4.637342340718657 -0.3675523761387198 RRHDS(ph)LHDPAAPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRHDSLHDPAAPSR 14 2 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 RRHDS(1)LHDPAAPSR 54.368 0.06705900000000001 68303000.0 22572.0 23489.0 22897.0 26845.0 26312.0 26240.0 25940.0 15777.0 32793.0 24501.0 True False 22450.474859984963 24270.817165599667 26120.69857570824 30243.574247520155 29662.677236557498 24426.090562315916 24685.18309957695 16954.359853982703 24711.604553687084 22937.325203638575 0.9787747551498994 1.0581363323806194 1.1387857277955271 1.3185309960519103 1.2932055927712125 1.064905796358556 1.0762014698933209 0.7391602858424492 1.0773533676789417 1.0 14.48540954333398 1.955385946671846 7.735524759216304 0.908575154138017 1.1464733942063383 0.3334308285105869 0.12623209034044763 0.2914126567713607 45.13693752038114 0.056111114062113325 0.035546109417270585 90.23726974950938 -1.955385946671846 0.23789824006832128 RRHES(ph)EEGDSHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRHESEEGDSHRR 13 3 Q6UN15;Q6UN15-5;Q6UN15-3;H0Y8P7 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 RRHES(1)EEGDSHRR 77.562 0.018278 6382300.0 2370.9 2933.1 3254.3 3297.1 3015.3 3693.4 3667.5 1926.8 3161.9 2633.0 True False 2358.135337831754 3030.7264604036095 3712.477153117323 3714.512521940719 3399.280581916685 3438.083951328416 3490.0890137894576 2070.5876000921517 2382.6921122893064 2464.959685775287 0.9566628417657328 1.229523743488882 1.5061005559405984 1.506926276878406 1.379041045390376 1.3947830348580563 1.4158807683265389 0.8400087076640783 0.9666251850037435 1.0 11.267348336292585 1.7429329014809256 8.911142878480872 0.9327240279776904 1.3532208556240246 0.588322834359837 0.15516347727778232 0.07539679407447847 23.963336118489266 0.07844487371587204 0.0422453034414789 55.32646232002825 -1.7429329014809256 0.4204968276463342 RRHS(ph)EQVANGPTPPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRHSEQVANGPTPPPR 16 2 A6ND36;A6ND36-2;K7EKG0 A6ND36 FAM83G Protein FAM83G 1 RRHS(1)EQVANGPTPPPR;RRHS(0.999)EQVANGPT(0.001)PPPR 107.57 0.00058313 75257000.0 22492.0 24585.0 18568.4 29273.0 26047.0 19781.9 18627.2 14049.4 27819.0 23500.0 True False 22370.905571096122 25403.296863053678 21182.66932057391 32978.958798571686 29363.93105733555 18414.42381458375 17726.131173185815 15097.837569407653 20963.380205501813 22000.209880637783 1.0168496433656564 1.1546842962353248 0.9628394199646529 1.4990292809704608 1.334711405784293 0.8370112791873929 0.805725548499719 0.6862587971351648 0.9528718280070375 1.0 14.425229666586247 2.7218039660666165 22.878590984261255 0.8205464176207058 1.1956052588896298 0.5095742588132595 0.16354272209772996 209.52517918712695 286072.7897663377 0.05505749766822543 0.052084835819299756 526.9919315735588 -2.7218039660666165 0.37505884126892397 RRHS(ph)EVETDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRHSEVETDSK 11 2 Q9NX58 Q9NX58 LYAR Cell growth-regulating nucleolar protein 1 RRHS(0.999)EVET(0.001)DSK 117.92 0.00041248 305340000.0 203060.0 115460.0 124170.0 127620.0 94293.0 144650.0 146920.0 117380.0 267330.0 185420.0 True False 201966.74752208692 119303.01630295615 141652.0566950121 143776.67891482654 106300.65463160223 134650.68596947414 139812.91831109676 126139.49164356287 201450.10353847378 173586.3368539513 1.1634944960674745 0.6872834490616218 0.8160322941441673 0.8282718647136068 0.612379157013028 0.7756986431643172 0.8054373451565479 0.7266671670690975 1.1605182020055296 1.0 17.405293870786068 1.2406468052813426 24.999743115600616 1.080259163006158 0.7894879694434204 0.378910194975437 0.14183690871137092 48.16462973625619 577239.3489694474 0.09957082713602114 0.032304036523196356 17.40390905829967 -1.2406468052813426 -0.2907711935627376 RRHSDKY(ph)NIPMSSEIAPNYEFYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRHSDKYNIPMSSEIAPNYEFYK 23 3 A0A0U1RQE0;A8MUV4;A0A0U1RQR8;A0A0U1RQY3;A0A0U1RQM2;O15409-2;O15409;O15409-9;O15409-4 A0A0U1RQE0 FOXP2 Forkhead box protein P2 1 RRHS(0.037)DKY(0.933)NIPMS(0.009)S(0.009)EIAPNY(0.009)EFY(0.002)K 46.982 0.09189 194240000.0 15757.0 46274.0 57566.0 60054.0 60889.0 45746.0 48738.0 46081.0 22339.0 60249.0 True False 15672.166062767275 47814.20211677632 65670.7924273583 67656.83024252465 68642.85323262206 42583.686694500924 46380.35674275952 49519.79821457669 16833.852777263935 56403.857238236014 0.27785628200163515 0.8477115654488114 1.164296125174224 1.199507153504748 1.2169886350625194 0.7549782724014408 0.822290513694131 0.8779505629449639 0.29845215560634236 1.0 15.783506205793948 1.4279071249559703 16.499687322988933 0.6288379550925881 0.9154882983229082 0.09223297018741372 0.304303908477461 6.540221995356439 2191.192928498457 0.18743781560752448 0.07567012830303331 26.78595438719533 -1.4279071249559703 0.2866503432303201 RRHT(ph)MDKDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RRHTMDKDSR 10 3 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 RRHT(1)MDKDSR;RRHT(1)MDKDSR;RRHT(1)MDKDSR 117.7 0.00048854 149434000.0 75199.8 77980.8 67752.5 64368.0 51504.6 67972.0 77442.0 56465.7 144044.0 81230.1 True False 74794.9326322833 80576.3437876109 77291.4630847129 72516.98220020019 58063.4055183186 63273.255628877276 73695.8346028311 60679.457261014824 108546.28629071145 76045.9254734125 0.983549508624672 1.0595747673000881 1.0163787553842825 0.9535945778653702 0.763530789543997 0.8320400499432299 0.969096426193103 0.7979317351095929 1.4273780694359735 1.0 16.214583330237183 -0.8334033037332567 5.71954446838821 1.0000000089605348 0.9578560265361034 0.0 0.17725545380027405 1.9645614085371318e-08 3.8641741536352876e-09 0.16479932110163437 0.038843564391901626 0.14675628054215525 0.8334033037332567 -0.0421439824244314 RRKDS(ph)AQDDQAK ddPTM_BT-474_Trastuzumab_2h_R1 5 RRKDSAQDDQAK 12 3 Q13045-3;Q13045;Q13045-2;J3KS54 Q13045-3 FLII Protein flightless-1 homolog 1 RRKDS(1)AQDDQAK;RRKDS(1)AQDDQAK;RRKDS(1)AQDDQAK;RRKDS(1)AQDDQAK;RRKDS(1)AQDDQAK 186.43 6.505600000000001e-05 786276000.0 558659.0 490683.0 377667.0 355866.0 395850.0 466436.0 668630.0 589569.0 1210007.0 692368.0 True False 555651.2420168496 507015.0870308633 430839.23085958854 400918.5991122371 446259.15111322934 434192.3771922402 636285.8124853563 633565.6325507209 911816.9881131114 648180.4814739336 0.8572477232781268 0.7822128273253979 0.6646902262158209 0.6185292685774277 0.6884797735631532 0.6698633939190919 0.9816491404345757 0.9774525007448865 1.4067331772158276 1.0 19.30603605216641 1.8487290869336765 1.6941129948817042 1.1768613085891035 0.709934016052825 0.6904673562092116 0.12625430654050074 0.1928033327945894 1.0478931411345338 0.08534180195760907 0.0372099378567224 70.587709049357 -1.8487290869336765 -0.4669272925362785 RRKEDEVEEWQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRKEDEVEEWQHR 13 3 P15311;E7EQR4 P15311 EZR Ezrin 0 ; 212.59 7.632600000000001e-09 384100000.0 94741.0 179490.0 154162.0 153795.0 154659.0 196626.0 205140.0 156757.0 329000.0 242880.0 False True 94230.92498271464 185464.21614600354 175866.66959987496 173265.43123104324 174353.9069142881 183033.70742781734 195216.5944890985 168455.00333591714 247922.35837413662 227379.19045997033 0.414421938929824 0.8156604646661989 0.7734510323662884 0.7620109425165109 0.7667979930862792 0.8049712335484811 0.8585508378941388 0.7408549700398961 1.0903476165633674 1.0 17.79474070054935 6.0544253531625625 0.17247333753137367 1.0222469928685916 8.779108166980142e-15 0.5636159127932863 0.11119690337933834 26.091725144723387 0.5147228652839752 0.30365104786077884 6.141950570924331 1133509.9928753194 -6.0544253531625625 -1.0222469928685827 RRLEEQAAQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRLEEQAAQHK 11 2 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 77.062 0.020206 76173000.0 40259.0 48555.0 40500.0 39977.0 39141.0 48511.0 53718.0 49615.0 78277.0 54528.0 False True 40042.250017195394 50171.12382288269 46202.047967689374 45038.084101065826 44125.374343117095 45157.54875261082 51119.455117312056 53317.52323986512 58986.68220806166 51047.97635623048 0.7844042580212522 0.9828229717231334 0.905071097143508 0.8822697257727605 0.8643902754380494 0.8846099684243267 1.001400227123261 1.044459096043239 1.1555146044660447 1.0 15.63956615047236 2.007513358913899 2.1403001192761555 1.0752483837814668 0.8875198163502971 0.6697527632713371 0.0583251822060081 0.1834703292411012 1.572345709466934 0.031227823390532573 0.016667461718401232 101.74506625182738 -2.007513358913899 -0.18772856743116972 RRLS(ph)DCESTDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRLSDCESTDVK 12 2 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 RRLS(0.999)DCESTDVK 71.692 0.045893 0.0 124080.0 114920.0 96277.0 111300.0 111200.0 144640.0 140410.0 119000.0 189030.0 143700.0 True False 123411.96706658386 118745.04272939301 109831.9647453144 125390.56858815387 125360.660865962 134641.3772459365 133617.83188171173 127880.38426975597 142446.08937222784 134528.9429722404 0.9173636865046173 0.8826728293992147 0.816418848752702 0.9320713135613338 0.9318489991542546 1.0008357627080986 0.9932273972395913 0.9505789716651805 1.0588508779231331 1.0 17.037557066478584 3.143206368758392 1.7112574188781244 0.993354037360402 0.875058318761699 0.6848943741397296 0.03675342048293494 0.21225216517402434 1.282773162163479 0.012445165018332366 0.01642816155358586 1390.613268114563 -3.143206368758392 -0.11829571859870291 RRLSES(ph)SALK ddPTM_BT-474_Trastuzumab_2h_R1 4 RRLSESSALK 10 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 RRLS(0.284)ES(0.712)S(0.004)ALK;RRLS(0.003)ES(0.989)S(0.008)ALK;RRLS(0.061)ES(0.655)S(0.284)ALK;RRLS(0.03)ES(0.86)S(0.109)ALK 128.73 0.00025351 1937930000.0 1336720.0 1241240.0 1114400.0 1112660.0 1089250.0 1323820.0 1375700.0 1268880.0 2011080.0 1471720.0 True False 1329523.248043553 1282553.9230545752 1271297.8334615577 1253522.6419164008 1227959.5310094343 1232307.439337082 1309152.1353156536 1363570.268842084 1515476.2810913615 1377793.5695971171 0.9649654907536845 0.9308752423845387 0.9227055935769101 0.9098043927458199 0.8912507345846474 0.8944064383298167 0.950180175175636 0.9896767548717823 1.099929854901634 1.0 20.39392831917492 1.613268825349682 2.5239360864103526 1.0491631190996933 0.9193694505927232 0.7247097688883901 0.03137415846260834 0.11864385912659967 1.7145711238529324 0.02150441557028083 0.008356636555526162 41.04580951561316 -1.613268825349682 -0.12979366850697005 RRNDLDDPER ddPTM_BT-474_Trastuzumab_2h_R1 4 RRNDLDDPER 10 2 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;;; 135.99 7.291100000000001e-05 523624000.0 109733.1 168066.4 136758.2 139688.8 139169.0 129020.09999999999 154480.9 164500.19999999998 156411.0 167771.0 False True 109142.30918209358 173660.3885257159 156012.5658364162 157373.38775738468 156891.34723071102 120101.24416764703 147008.06869265388 176776.04023909004 117865.6048500214 157063.7111440206 0.6948919542720776 1.1056684402832992 0.9933075227883763 1.0019716623980706 0.998902586013955 0.7646657734804152 0.9359773025982676 1.125505305786351 0.7504318087960099 1.0 17.260990365443565 -1.242668050102142 4.0340416104976775 1.0000245798842076 0.9498947855573419 0.004358404258542614 0.14192192374369497 5.361412433515409e-05 1.0065394253122398e-05 0.1308330511934742 0.030810511973483157 0.057191560927973124 1.242668050102142 -0.050129794326865706 RRNDS(ph)YTEEEPEWFSAGPTSQSETIELTGFDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRNDSYTEEEPEWFSAGPTSQSETIELTGFDDK 33 2 B1AKL4;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 RRNDS(0.398)Y(0.203)T(0.398)EEEPEWFSAGPTSQSETIELTGFDDK 222.61 2.0664e-36 385240000.0 131610.0 129330.0 99845.0 99276.0 111300.0 144810.0 140700.0 134920.0 200280.0 155040.0 True False 130901.42638324553 133634.6708683641 113902.30813170226 111844.33142100227 125473.39527321554 134799.6255460736 133893.80347380406 144988.41550987808 150923.67761450456 145145.21446357798 0.9018652586447711 0.9206963616557797 0.7847472515897818 0.7705685084716859 0.8644680138917099 0.9287224938435675 0.9224816950985505 0.9989197097935375 1.039811599523156 1.0 17.147137480548967 2.128744657992569 1.2268737350346508 1.01963149141594 0.8459571646610061 0.6903308644422554 0.046771748257532234 0.2888329560807378 0.8202855100738788 0.03565740786557356 0.018419081472278356 134.5069292476031 -2.128744657992569 -0.17367432675493377 RRPAS(ph)PELLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RRPASPELLR 10 2 Q99929 Q99929 ASCL2 Achaete-scute homolog 2 1 RRPAS(1)PELLR;RRPAS(1)PELLR;RRPAS(1)PELLR;RRPAS(1)PELLR 113.69 0.0011452 1796380000.0 298365.0 414849.0 344581.0 366290.0 301079.0 380158.0 378951.0 344199.0 441725.0 375281.0 True False 296758.635991468 428656.99818348367 393095.00964825583 412662.27644344 339419.62601495476 353878.57225567487 360619.6923965992 369884.87718710734 332867.7925617486 351330.2452857715 0.8446714735592574 1.220097056644852 1.1188760857423845 1.174570883038496 0.9660985086520841 1.0072533663244123 1.026440783950359 1.0528125094560064 0.9474498624250082 1.0 18.422468254941098 3.2262586156710333 24.99393464261652 1.0081414058476594 1.1009728428352905 0.16392401999020267 0.09667818106126716 378.9389560462164 769887.7480362285 0.026769094794436177 0.03221066742733986 1683.676365940971 -3.2262586156710333 0.09283143698763108 RRPENPKPQDGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RRPENPKPQDGK 12 3 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ;; 121.45 0.00045988 989450000.0 1314350.0 1042730.0 1008480.0 924460.0 977710.0 1325450.0 1291820.0 1282310.0 1888880.0 1369670.0 False True 1307273.6856380121 1077436.637706403 1150465.218134702 1041496.54121298 1102215.5731588101 1233824.761273691 1229329.7313683704 1378002.483638241 1423390.8336952527 1282256.4879665177 1.0195102913545544 0.8402660839057786 0.8972192606794148 0.8122372949460761 0.8595905604710742 0.9622292987812191 0.9587237365575105 1.0746699249099243 1.1100671722492546 1.0 20.290253440412023 2.1035753400507105 1.628431917807447 1.0694749407626833 0.8828956549435505 0.5922473707580084 0.06077423868834441 0.2403758803830222 1.2163116393678237 0.035575303862605843 0.019077598966339367 126.93323251550025 -2.1035753400507105 -0.18657928581913286 RRPES(ph)APAESSPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 RRPES(0.999)APAESSPSK 77.99600000000002 0.018203 139900000.0 88975.0 81851.0 68927.0 82447.0 76493.0 71069.0 57317.0 63054.0 74997.0 63834.0 True False 88495.96848605185 84575.36105502561 78631.32247577605 92884.78174651865 86233.93014046784 66156.16730843105 54544.357737796905 67759.40966172442 56514.994258313345 59760.05946896307 1.4808547593901416 1.4152489439698532 1.3157838726150188 1.5542953365827759 1.4430027497756126 1.107029810483871 0.9127226147779357 1.133857801746598 0.9456984273528865 1.0 15.866893963344863 2.6705187588537966 3.92753783590742 1.0189845865549032 1.4410727929801137 0.8785625596169415 0.0789972882681851 0.07657295288196014 2.3322285632599664 0.02608539513026045 0.024858672632930612 468.29417836858374 -2.6705187588537966 0.4220882064252105 RRPESAPAES(ph)SPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 RRPES(0.037)APAES(0.478)S(0.478)PS(0.008)K 113.54 0.00041699 89092000.0 52901.0 43415.0 43620.0 39792.0 43485.0 52878.0 41900.0 44326.0 68498.0 45290.0 True False 52616.18689385362 44860.04203007828 49761.31684816321 44829.66312003432 49022.556994211845 49222.66832142306 39873.136926456245 47633.83120286726 51617.585726175064 42399.553425280195 1.2409608744247265 1.0580310028296442 1.1736283245496084 1.0573145115558034 1.1562045595740347 1.160924216057301 0.9404140776322987 1.1234512478253178 1.2174087120313568 1.0 15.371761449183996 RRPGAQPLPPPPPSQS(ph)PEPTEPHPR ddPTM_BT-474_Trastuzumab_2h_R1 3 RRPGAQPLPPPPPSQSPEPTEPHPR 25 2 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;Q9UIS9-10;Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 K7EPZ6;Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 RRPGAQPLPPPPPS(0.001)QS(0.999)PEPTEPHPR;RRPGAQPLPPPPPS(0.003)QS(0.997)PEPTEPHPR;RRPGAQPLPPPPPS(0.118)QS(0.882)PEPTEPHPR 129.51 5.238100000000001e-05 332590000.0 58291.7 65749.0 62091.2 78204.3 87097.0 93309.0 72272.7 74475.0 113877.0 88286.0 True False 57977.86396401671 67937.41571889025 70833.10125361467 88104.95636153242 98188.2866856357 86858.76845575983 68776.5933924747 80032.70267638714 85813.53922362164 82651.51189455266 0.7014737254653641 0.8219742647365633 0.8570091415143622 1.065981182218872 1.1879793174371083 1.050903564432975 0.8321274688867194 0.968315047624215 1.0382573440774212 1.0 16.334753589663816 4.062668801021841 2.335833216823988 1.011818109531131 0.747892508755874 0.5886256610104994 0.08876438728843171 0.2418169641895664 2.614371314293785 0.026760375372886676 0.074236737433047 11552.309111076102 -4.062668801021841 -0.26392560077525695 RRPGGEGPQCEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RRPGGEGPQCEK 12 2 Q9NWY4 Q9NWY4 C4orf27 UPF0609 protein C4orf27 0 ;; 90.614 0.0049279 80563000.0 85334.0 86855.0 79294.0 78200.0 76852.0 91138.0 94195.0 76550.0 119265.0 90198.0 False True 84874.5712254987 89745.91617004377 90457.90596419651 88100.11198197344 86638.64666250824 84837.84457577542 89638.42799015627 82262.54971302379 89873.73881912278 84441.48641760703 1.0051288155415674 1.0628178159513155 1.071249569398094 1.0433273467768274 1.026019914358626 1.0046938794540896 1.0615448850207074 0.9741958982838452 1.064331558242005 1.0 16.36566435411841 3.2180519537240286 3.564493553537813 1.018790078707695 1.0492344018577213 0.12737110341426794 0.030126883730494675 0.3927014722753379 10.53453153524602 0.008522743350527624 0.010972940803856015 1652.1594307219827 -3.2180519537240286 0.03044432315002643 RRPPS(ph)PEPSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 RRPPSPEPSTK 11 2 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 1 RRPPS(0.986)PEPS(0.012)T(0.002)K;RRPPS(0.999)PEPSTK 93.494 0.0072518 469120000.0 309650.0 305070.0 277180.0 265070.0 280980.0 331290.0 328970.0 301040.0 430520.0 344480.0 True False 307982.8788053492 315224.0705312903 316204.5347082507 298627.8348217605 316761.13750106096 308388.7020727759 313056.4643125606 323505.1334501459 324424.11467244115 322494.991475834 0.9550005021657142 0.9774541585552391 0.9804944047695245 0.9259921633360871 0.9822203317064455 0.9562588884295429 0.9707327945774294 1.0031322718213054 1.005981870254105 1.0 18.298917229301118 1.7821537279459418 3.5975211128088866 1.0039758856383354 0.9635596874072866 0.5747147654466727 0.015474462415457227 0.15575718520478032 3.8601445047634244 0.008018786669418064 0.0040815728599262885 60.5555186206181 -1.7821537279459418 -0.040416198231048805 RRPS(ph)LLSEFQPGNER ddPTM_BT-474_Trastuzumab_2h_R1 1 RRPSLLSEFQPGNER 15 2 C9J0Q5;C9JE98;C9J330;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 RRPS(0.988)LLS(0.012)EFQPGNER 86.8 0.0058415 246040000.0 43575.0 56675.0 41986.0 34528.0 34397.0 48477.0 40298.0 38688.0 51980.0 54196.0 True False 43340.39704163765 58561.39311423899 47897.263851145835 38899.241259764385 38777.25406300805 45125.899092583415 38348.631786690545 41575.09501368338 39170.22549631493 50737.16488047001 0.854214009469032 1.1542109862110312 0.9440272030174607 0.7666814129525331 0.7642771162788083 0.8894052160560018 0.7558292205927313 0.8194209335824884 0.7720223545914471 1.0 15.630755285487334 3.9202169616021365 5.027542325331674 0.8140907703896161 1.0144884523552264 0.3649887750034301 0.09785240495803968 0.17698910543340576 7.840958288748587 0.023007021680215643 0.04343145838454959 8321.794012615554 -3.9202169616021365 0.20039768196561036 RRPS(ph)PQPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 RRPSPQPSPR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR 97.273 0.030355 12347910000.0 1871070.0 2060790.0 1694290.0 1992780.0 2059770.0 2018040.0 2048520.0 1827290.0 2139180.0 2023770.0 True False 1860996.3670154186 2129382.149376137 1932831.30496732 2245065.743675661 2322069.500286715 1878537.644755185 1949425.2614936524 1963651.6585906113 1612007.752543418 1894611.2659633332 0.9822576274342891 1.1239150677663856 1.020173024245453 1.1849743448739263 1.2256179101236562 0.9915161376389392 1.0289315262265415 1.036440400132517 0.8508382598072314 1.0 20.85347043766901 1.8476395709516138 1.2805746611210085 0.9437986157744388 1.0995462164512433 0.3392403310829052 0.08365434100552713 0.5127078601430705 1.5646353171178051 0.06615843006756801 0.027629426490139622 70.41084737311796 -1.8476395709516138 0.1557476006768045 RRPS(ph)PQPSPRDQQSSSSER ddPTM_BT-474_Trastuzumab_2h_R1 1 RRPSPQPSPRDQQSSSSER 19 3 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RRPS(1)PQPSPRDQQSSSSER 79.445 0.048113 41160000.0 2955.0 4413.6 4320.2 2887.4 2718.7 3056.1 2875.2 2394.7 2679.8 2267.3 True False 2939.090608331365 4560.50400792246 4928.446608148439 3252.9445439482065 3064.910330002615 2844.8390002855845 2736.1155916693792 2573.4046740402086 2019.399197480276 2122.5989728668096 1.3846659900912848 2.1485471661012747 2.3218924870636375 1.532529029520229 1.4439422468310665 1.340262120471729 1.289040288177444 1.2123838308300579 0.9513804648425177 1.0 11.05161611021195 3.2123102368649517 1.5409514653143916 1.1763296787970234 1.9598738668389153 0.6213334643960633 0.2613110134005603 0.25125718920106044 1.2406024525148434 0.09048320956558709 0.12870000903308815 1630.460330821995 -3.2123102368649517 0.7835441880418919 RRQEIEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RRQEIEQK 8 2 Q9H307 Q9H307 PNN Pinin 0 ; 90.709 0.0073141 63254000.0 46800.0 47761.0 47888.0 42153.0 36614.0 41642.0 46852.0 36612.0 66225.0 46507.0 False True 46548.03399996884 49350.6960128658 54630.21415004223 47489.56547795553 41276.57587181955 38763.38655472407 44585.58976797916 39344.173351968966 49904.736119535504 43538.88344335412 1.0691140956917222 1.1334855676093092 1.2547454098385042 1.090739167432748 0.9480393755508699 0.8903165053636902 1.0240407250219645 0.9036560021838262 1.1462107471006606 1.0 15.410016789570037 3.3917669198810776 4.584253047915746 0.9744402230498749 1.1539173510887129 0.4728247365664038 0.07970235466331779 0.16342283528861368 6.206682105753905 0.02190790441955143 0.03021813601920105 2464.716201542247 -3.3917669198810776 0.17947712803883797 RRS(ph)GT(ph)LVIDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSGTLVIDFR 11 2 D6RHX4;H7BY57;X6RKN2;D6RBU5;O94856-11;O94856-5;O94856-13;O94856-7;O94856-9;O94856-6;O94856-3;O94856-8;O94856-10;O94856-12;O94856-4;O94856-2;O94856 D6RHX4 NFASC Neurofascin 2 RRS(1)GT(1)LVIDFR 71.501 0.085814 48734000.0 5372.7 10048.0 7932.4 7533.8 9226.6 10792.0 9598.1 9709.0 12286.0 11742.0 True False 5343.773980163087 10382.44160585574 9049.212970343191 8487.578307542079 10401.552819657236 10045.974441635428 9133.803234697365 10433.534881303036 9258.279923965472 10992.615507168033 0.4861239781086252 0.9444923820982902 0.8232083587788918 0.7721163632083304 0.9462309322903745 0.9138839100744202 0.8309035487269996 0.9491403455801366 0.8422272131621777 1.0 13.424247071594483 4.7436379770742 24.95038126556437 0.8865075000229575 0.4861238075303094 0.7599120797475308 0.06828373942781467 243.18396451767532 1194977.9150090923 0.015620574684931249 0.13135489716326457 55416.3575933446 -4.7436379770742 -0.4003836924926481 RRS(ph)LEPAENVHGAGGGAFPASQTPSKPASADGHR ddPTM_BT-474_Trastuzumab_2h_R1 3 RRSLEPAENVHGAGGGAFPASQTPSKPASADGHR 34 3 P12931;P12931-2 P12931 SRC Proto-oncogene tyrosine-protein kinase Src 1 RRS(1)LEPAENVHGAGGGAFPASQTPSKPASADGHR;RRS(1)LEPAENVHGAGGGAFPASQTPSKPASADGHR;RRS(1)LEPAENVHGAGGGAFPASQTPSKPASADGHR 129.46 2.1622e-08 1019741000.0 240921.0 343036.0 348189.0 343420.0 376404.0 462113.0 443919.0 357710.0 530282.0 465704.0 True False 239623.9081048394 354453.74589035864 397210.98468695825 386896.9367883536 424336.8182787012 430168.21600699285 422444.9420347383 384404.1366145753 399601.1065147528 435982.37201074674 0.5496183412180087 0.8130001776347543 0.9110712042209982 0.8874141745777208 0.973288934416462 0.9866642406275762 0.9689495932746686 0.8816965118147023 0.9165533566685188 1.0 18.73391027841422 5.1182010351581315 1.1622110274341824 0.9425528286900476 0.00387924667093002 0.9122718238278655 0.03718488389065379 0.9600726275005558 0.6019412192117745 0.011392708471034895 1.3494765729949378 131280.7457693812 -5.1182010351581315 -0.9386735820191177 RRS(ph)PGLCSDSLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 RRSPGLCSDSLEK 13 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 RRS(0.996)PGLCS(0.004)DSLEK;RRS(0.998)PGLCS(0.002)DSLEK;RRS(0.943)PGLCS(0.057)DSLEK;RRS(0.868)PGLCS(0.066)DS(0.066)LEK 162.81 8.15e-06 1267720000.0 934260.0 994060.0 899320.0 900374.0 840290.0 1133940.0 1187240.0 1044590.0 1620830.0 1297510.0 True False 929230.047966043 1027146.6861780414 1025936.4389704302 1014361.2560825734 947295.9507109636 1055553.396807643 1129808.6655027661 1122542.6101205407 1221398.1645092752 1214701.8009458021 0.7649861449472763 0.8455957547591311 0.8445994219911473 0.8350701837214387 0.7798588509322794 0.8689815031028671 0.9301119539158206 0.9241301933087581 1.0055127633450935 1.0 20.21217075714793 1.9391424448747852 0.982138516439267 1.0008513181865895 0.8161262422307161 0.8503968640637842 0.03056472766645014 0.2017927263650955 0.35783333889190655 0.025435982339158697 0.011610027460757682 86.92454876191634 -1.9391424448747852 -0.1847250759558734 RRS(ph)PPADAIPK ddPTM_BT-474_Trastuzumab_2h_R1 9 RRSPPADAIPK 11 2 P18754-2;C9JW69;P18754;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;M0R1Q8 P18754-2 RCC1 Regulator of chromosome condensation 1 RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK 115.8 0.00084615 41733207400.0 6545326.0 6705879.0 5894112.0 5930829.0 6055243.0 7010927.0 7006948.0 6809543.0 9362345.0 7184848.0 True False 6510086.692070085 6929080.128725537 6723951.737060092 6681671.343298403 6826342.303812861 6526278.118436971 6667995.156099257 7317705.676818726 7055120.523745606 6726304.849382159 0.9678548382576007 1.0301466085590818 0.9996501627008054 0.9933643349382453 1.0148725721879661 0.97026201823672 0.9913310956626864 1.0879235837030028 1.0488850389220241 1.0 22.681382735450832 1.7578837444464626 24.999999999999996 1.0537979240121094 0.996566897773396 0.4172681123226687 0.026662923541934103 6.561542397140685 8497.265755674745 0.011611877210846487 0.006439458510374506 57.264272070803955 -1.7578837444464626 -0.057231026238713345 RRS(ph)PPPGPDGHAK ddPTM_BT-474_Trastuzumab_2h_R1 8 RRSPPPGPDGHAK 13 2 P57081;P57081-2;P57081-3 P57081 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK 159.54 2.3687e-05 7239080000.0 906883.0 885414.0 816925.0 811900.0 879515.0 926191.0 922215.0 872034.0 1230098.0 956328.0 True False 902000.4426921724 914884.4697459341 931940.9391606082 914686.4567540166 991516.0219561735 862165.5961890997 877603.9372465839 937109.6051789287 926956.830368718 895294.3282864068 1.0074904019760753 1.0218812303848979 1.0409324729492513 1.0216600595524004 1.107474928221577 0.96299682567998 0.9802406979683627 1.04670562023168 1.0353654670670296 1.0 19.77200252123112 2.699090060115019 24.99996115851166 1.0090584064454609 1.0379329733327018 0.2041023987041588 0.03381990961014659 1101.2239608406458 697494.56100882 0.011423729178515573 0.01077053698746778 500.138238429869 -2.699090060115019 0.028874566887240993 RRS(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSPPPR 7 2 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 RRS(1)PPPR 58.433 0.08630399999999999 21850000.0 5645.7 12441.0 8534.8 13636.0 9419.7 6721.9 7877.0 6080.2 8196.8 7988.4 True False 5615.304178496238 12855.091164256688 9736.425654188533 15362.316201869431 10619.242960063877 6257.2308746505905 7495.959416937844 6533.935398630002 6176.808471492767 7478.573472786677 0.7508523114641348 1.7189228949925133 1.301909473727552 2.0541773451541827 1.4199556905746251 0.8366877583565429 1.0023247674458815 0.873687398058726 0.8259340493169155 1.0 12.868547388998484 2.7802183308866413 6.025103864425197 0.9055261175744751 1.4931740912378517 0.42345896496574353 0.3141927546931276 0.18510556094218877 18.405686342115963 0.09389851134364027 0.098465584613454 602.862584266427 -2.7802183308866413 0.5876479736633766 RRS(ph)PQEGPTWSR ddPTM_BT-474_Trastuzumab_2h_R1 5 RRSPQEGPTWSR 12 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 RRS(1)PQEGPTWSR;RRS(1)PQEGPTWSR;RRS(1)PQEGPTWSR;RRS(1)PQEGPTWSR;RRS(1)PQEGPTWSR 127.2 0.00021577 2828820000.0 690740.0 1138520.0 962570.0 986140.0 986230.0 829560.0 928340.0 874100.0 772910.0 1061310.0 True False 687021.1325884281 1176414.9499501279 1098091.4891915752 1110985.2228887875 1111820.544656813 772214.4697741924 883432.6475968115 939329.7805898637 582436.6869633856 993576.2871667957 0.691462891639135 1.1840207592964005 1.1051909182764486 1.1181680131042437 1.1190087354310692 0.7772070245116042 0.8891442549579548 0.9454027765380582 0.5862022820856729 1.0 19.922271216840716 2.7405959799251356 24.94572999097641 0.8495051287687522 1.0589407602898298 0.2764179403493714 0.1636801280930123 232.11055203525441 2844795.758663269 0.049459095818987844 0.050096152686902415 550.2955234538988 -2.7405959799251356 0.20943563152107758 RRS(ph)PS(ph)LSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RRS(1)PS(0.982)LS(0.018)SK;RRS(1)PS(0.983)LS(0.016)S(0.001)K;RRS(1)PS(0.997)LS(0.003)SK;RRS(0.999)PS(0.936)LS(0.066)SK 109.6 0.011918000000000002 12198640000.0 8673900.0 6778510.0 4768890.0 6357260.0 5977560.0 7678300.0 7647700.0 7762700.0 10555600.0 8339400.0 True False 8627200.686160881 7004128.607654171 5440308.260065039 7162088.46417545 6738766.834226079 7147517.193774021 7277751.533948909 8341992.092191884 7954313.817793424 7807172.352280458 1.1050352543633668 0.8971402566267517 0.6968346559527325 0.917372915698911 0.8631507708751556 0.9155065203199013 0.9321878915383612 1.068503642007494 1.0188469600610246 1.0 22.896368688496832 1.9320556187063522 3.4141582113718494 1.0340407217855774 0.8900734278609437 0.27127906497427423 0.09413051752945654 0.3077737287800067 6.543682591540953 0.047585513776142896 0.02679865834815746 85.51762255582469 -1.9320556187063522 -0.1439672939246337 RRS(ph)PS(ph)PAPPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSPSPAPPPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RRS(1)PS(1)PAPPPR 97.949 0.028947000000000007 776300000.0 202660.0 259730.0 182320.0 239550.0 230810.0 247400.0 223800.0 198740.0 240590.0 229980.0 True False 201568.90107764254 268374.95603989944 207989.0712461512 269877.00543838495 260202.2853819488 230297.82031695722 212973.93900097618 213570.98798127178 181299.81824083117 215302.47950421588 0.9362126323013181 1.2465019290901587 0.9660319366739041 1.253478390308554 1.2085429112619845 1.0696477850476762 0.9891847947659418 0.9919578653857993 0.8420702755412582 1.0 17.71600540865556 2.2097202634432165 2.151161146449828 0.947632374496208 1.1280490936778553 0.3497892863582265 0.10768327603741276 0.34015321948003446 3.1738686713808906 0.04913717427456596 0.03204047705022708 162.0765797900285 -2.2097202634432165 0.18041671918164737 RRS(ph)PS(ph)PKPTK ddPTM_BT-474_Trastuzumab_2h_R1 7 RRSPSPKPTK 10 3 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BV80 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 2 RRS(1)PS(0.999)PKPT(0.001)K;RRS(1)PS(0.999)PKPT(0.001)K;RRS(1)PS(0.989)PKPT(0.012)K;RRS(1)PS(0.998)PKPT(0.002)K;RRS(1)PS(0.964)PKPT(0.037)K;RRS(1)PS(0.869)PKPT(0.131)K;RRS(1)PS(0.999)PKPT(0.001)K 107.35 0.0032959000000000005 14480190000.0 11153270.0 8093800.0 4112570.0 6632560.0 6779330.0 9461560.0 9768580.0 9278310.0 15043370.0 9571200.0 True False 11093222.033564776 8363197.24019457 4691584.108900755 7472241.415948308 7642637.491262972 8807504.627316527 9296036.465800514 9970704.60650352 11336133.034330493 8960357.821683409 1.238033374819027 0.9333552751605797 0.5235933879278197 0.833922212109212 0.8529388717901812 0.9829411729521573 1.037462638300536 1.1127574149299202 1.2651428949520165 1.0 23.095124915140598 2.281973530424826 1.6233902173884032 1.134183530223013 0.8580256295811484 0.27804116672164314 0.17354097176977823 0.4841989873307677 2.5538460305726858 0.09559001180125519 0.061052825412366944 191.41392576464423 -2.281973530424826 -0.27615790064186463 RRS(ph)PS(ph)PTPTPGPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSPSPTPTPGPSR 14 2 F8WD88;P49450-2;P49450 F8WD88 CENPA Histone H3-like centromeric protein A 2 RRS(0.976)PS(0.8)PT(0.22)PT(0.004)PGPSR 91.065 0.027071 565770000.0 168340.0 221050.0 184420.0 201410.0 233810.0 244610.0 235560.0 199220.0 237910.0 244380.0 True False 167433.67614433213 228407.51562245298 210384.732992624 226908.4853489672 263584.31759955565 227700.68645000365 224165.06287341376 214086.80801866204 179280.26833067113 228783.45917575565 0.7318434503418646 0.9983567712689672 0.91958017310597 0.9918045918461786 1.1521126507535904 0.9952672595752642 0.9798132420980926 0.9357617407742603 0.7836242575252992 1.0 17.803623224858455 4.742033564479432 24.53607411923623 0.974613266031495 0.7318433312412167 0.4124495260901758 0.08630082740696239 269.2755606338239 1902297.3990710634 0.02129214147404797 0.1553874724366693 55212.01082731115 -4.742033564479432 -0.2427699347902783 RRS(ph)PSLS(ph)SK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RRS(0.989)PS(0.43)LS(0.578)S(0.004)K 97.297 0.033382 675570000.0 1010400.0 783410.0 553200.0 733670.0 697400.0 930870.0 945960.0 847930.0 1217600.0 1012800.0 True False 1004960.1186659943 809485.328268655 631085.7514994014 826552.5467751208 786209.7561863471 866521.1479322793 900200.3008818742 911206.8423012967 917538.795004099 948162.2368982962 1.0599031258126246 0.8537413712200855 0.6655883634048319 0.8717416857678337 0.8291932810552117 0.9138954434284499 0.9494158972484299 0.9610241864115039 0.9677023185458482 1.0 19.85477440944959 2.4418469340267057 2.084234190438054 0.9685668473439072 0.8457422033284595 0.2575511696575927 0.0899144066861318 0.45131715307424775 3.9920757562042355 0.0384832753853075 0.030670807661211014 276.5966615777623 -2.4418469340267057 -0.12282464401544768 RRS(ph)PSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 8 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RRS(0.962)PS(0.038)LSSK;RRS(0.737)PS(0.263)LSSK;RRS(0.956)PS(0.044)LSSK;RRS(0.998)PS(0.002)LSSK;RRS(0.996)PS(0.004)LSSK;RRS(0.645)PS(0.355)LSSK;RRS(0.999)PS(0.001)LSSK;RRS(0.999)PS(0.001)LSSK 177.42 4.1066e-05 42228800000.0 6671910.0 8079110.0 7959710.0 6615010.0 6212590.0 7394070.0 8151200.0 6900600.0 11002340.0 7489400.0 True False 6635989.1778788855 8348018.292424878 9080367.980960421 7452469.587747745 7003726.51159413 6882935.344668572 7756895.315392131 7415557.8125368 8290960.730802716 7011420.080002063 0.9464543704642687 1.1906315977607809 1.2950825763327747 1.0629044477029186 0.9989027089633559 0.9816749340550919 1.1063230025991895 1.057639925710259 1.1824937938678288 1.0 22.741275243929316 RRS(ph)PSPT(ph)PTPGPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSPSPTPTPGPSR 14 2 F8WD88;P49450-2;P49450 F8WD88 CENPA Histone H3-like centromeric protein A 2 RRS(0.983)PS(0.361)PT(0.652)PT(0.005)PGPSR 73.928 0.038037 140570000.0 71256.0 79747.0 63504.0 81851.0 72606.0 86660.0 76496.0 68895.0 92247.0 87229.0 True False 70872.36561328579 82401.33068692058 72444.81121333709 92213.32820762787 81851.94373052199 80669.39817569734 72795.59623690209 74036.29474172143 69513.96289647106 81661.97053949589 0.8678747909837456 1.0090539101927145 0.8871303341657557 1.1292077278863704 1.0023263361117918 0.9878453537522892 0.8914259079958697 0.9066190082434236 0.8512403317876167 1.0 16.317376760402475 2.243079198337193 24.7642662873445 0.9042940105234649 0.9853651782118918 0.15875865430225466 0.07559435726768834 156.9147493302162 859981.7599246547 0.026075346829063532 0.021118940588843033 175.01658213580075 -2.243079198337193 0.08107116768842693 RRS(ph)PSPY(ph)YSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 RRS(0.906)PS(0.114)PY(0.436)Y(0.121)S(0.423)R;RRS(0.973)PS(0.091)PY(0.919)Y(0.014)S(0.003)R 78.529 0.048783 8924030000.0 3658000.0 3879310.0 3500810.0 3748120.0 3914310.0 3791500.0 4173510.0 3562590.0 3990570.0 4131140.0 True False 3638305.734442009 4008430.4882575837 3993693.618413992 4222631.607696596 4412774.176566937 3529402.529230976 3971621.3769435408 3828448.556265464 3007147.4943984137 3867487.1083531086 0.9407415286747545 1.0364431414910373 1.0326326905623808 1.0918282309400427 1.1409926013809075 0.9125828814291512 1.0269255632075722 0.9899059645206502 0.777545576791579 1.0 21.882965052014377 1.4280447597304164 6.6157952962913065 0.8852072565352884 1.0269572668243223 0.31748114660418747 0.07920525178586771 0.21166591116833874 17.861846056712185 0.0496585978394643 0.01922150704928455 26.79444462409474 -1.4280447597304164 0.1417500102890339 RRS(ph)PSPYYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 RRS(0.939)PS(0.308)PY(0.228)Y(0.093)S(0.432)R 86.54799999999999 0.06632 13218000000.0 1484100.0 1626100.0 1209300.0 1721900.0 1618000.0 1667000.0 1616000.0 1389900.0 1710200.0 1701200.0 True False 1476109.770499012 1680223.7555017925 1379558.9285759686 1939892.3634496168 1824042.7093626482 1551764.2136959077 1537827.9062805064 1493621.3957691914 1288744.1255059224 1592627.9595294052 0.9268390408863458 1.055000790013928 0.8662154399095223 1.2180448998414057 1.1453037091610663 0.9743419386875689 0.9655914283552505 0.9378344683905533 0.8091934577656947 1.0 20.602977859647012 2.154522989899274 1.9953794446992374 0.9124705988176828 1.041465014015378 0.20981284752261653 0.10367075872750953 0.5232333338324248 4.102807409624432 0.054799037479607265 0.032968170227833195 142.73253853462217 -2.154522989899274 0.12899441519769528 RRS(ph)QS(ph)IEQESQEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RRSQSIEQESQEK 13 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 2 RRS(1)QS(0.894)IEQES(0.106)QEK;RRS(0.982)QS(0.898)IEQES(0.12)QEK;RRS(0.998)QS(0.774)IEQES(0.228)QEK 209.23 1.9451e-07 7535730000.0 6741390.0 5709610.0 4635070.0 5276330.0 5343680.0 6796030.0 6602780.0 6681300.0 9071200.0 6841810.0 True False 6705095.105278846 5899650.917317872 5287647.567249333 5944312.837005692 6024165.973527186 6326236.442233838 6283378.306330951 7179892.532953964 6835724.307852472 6405159.828231766 1.0468271339186679 0.9210778615256746 0.8255293714831565 0.9280506648413647 0.9405176662375716 0.9876781550945755 0.9809869659514125 1.1209544688186295 1.0672215044069508 1.0 22.610803139972354 2.2095526378307784 1.6574940428136722 1.0719605051573615 0.9266340024984809 0.4390334763003604 0.059897848586154503 0.30842703452950093 1.670168318099156 0.03360491884199298 0.02008346133077362 162.0140348011493 -2.2095526378307784 -0.14532650265888059 RRS(ph)QSIEQES(ph)QEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSQSIEQESQEK 13 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 2 RRS(1)QS(0.002)IEQES(0.998)QEK 219.78 1.0771e-10 2289400000.0 1591900.0 1363400.0 1150000.0 1220000.0 1366000.0 1668000.0 1627300.0 1681000.0 2226500.0 1619700.0 True False 1583329.3872767184 1408779.9448072955 1311910.0040208097 1374451.8749105816 1539952.0030836712 1552695.0860496566 1548581.282110317 1806444.7559450392 1677808.9085714717 1516329.359305064 1.044185669531823 0.9290725238301404 0.8651880252599343 0.9064335966827781 1.0155788342642351 1.023982736020662 1.0212697344461061 1.191327428213179 1.1064937167347428 1.0 20.53215172219166 2.512731839498832 1.3343019411141173 1.111368366513868 0.9357814403140183 0.45971614005403993 0.06658403818352851 0.33095814944983526 1.1940928839535065 0.034721598930918945 0.026469465444859227 325.63557120098636 -2.512731839498832 -0.17558692619984972 RRS(ph)QSIEQESQEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RRSQSIEQESQEK 13 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 RRS(0.715)QS(0.109)IEQES(0.177)QEK;RRS(0.991)QS(0.009)IEQESQEK;RRS(0.827)QS(0.172)IEQES(0.001)QEK 227.0 7.7443e-12 874050000.0 384273.0 372149.0 356958.0 363845.0 408168.0 498754.0 481248.0 442314.0 643719.0 509698.0 True False 382204.11686474393 384535.7544961791 407214.58366544335 409907.7396941317 460145.7753987227 464276.30992062896 457968.1956941098 475321.7167049824 485083.0778426772 477168.6372655878 0.8009833149449269 0.8058697166263045 0.8533976289786861 0.8590416630126945 0.9643252709054506 0.9729816120798754 0.9597617276745051 0.9961294175342512 1.0165862547514501 1.0 18.86413969695793 3.4055747512803958 0.9021018000875819 0.9972504377113792 0.7927037888054836 0.9515299664680388 0.01749334319859571 0.12236447053995714 0.20799796841029553 0.0077274421303466165 0.016279629624317657 2544.33768985854 -3.4055747512803958 -0.20454664890589558 RRS(ph)S(ph)DEDAAGEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSSDEDAAGEPK 13 2 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 2 RRS(1)S(1)DEDAAGEPK 99.044 0.014959 146740000.0 178340.0 172670.0 119010.0 142290.0 141380.0 179370.0 165130.0 158710.0 237080.0 158180.0 True False 177379.83725543672 178417.21656878068 135765.57354653612 160303.89941067743 159383.90497508744 166970.57409156283 157142.0310421413 170553.74611305023 178654.81070924108 148084.81697528865 1.1978259546016565 1.2048312596324693 0.9168095441492272 1.0825140800047572 1.0763014617608253 1.1275333791946118 1.0611623409600732 1.1517301340995076 1.206435705957983 1.0 17.17606420421048 1.7097839925729004 11.156482917431799 1.1338923836058474 1.092667273516541 0.006603010347248861 0.08980941276470095 0.4370890460077707 120.87747321121496 0.04250857552096526 0.02315154959059633 51.26063627394164 -1.7097839925729004 -0.041225110089306405 RRS(ph)S(ph)PSARPPDVPGQQPQAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RRSSPSARPPDVPGQQPQAAK 21 3 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 2 RRS(0.958)S(0.967)PS(0.075)ARPPDVPGQQPQAAK;RRS(0.843)S(0.869)PS(0.288)ARPPDVPGQQPQAAK 151.84 8.3559e-08 590780000.0 225840.0 233850.0 209400.0 227790.0 228660.0 260050.0 244540.0 203210.0 255730.0 226300.0 True False 224624.10253318292 241633.5558846897 238881.699862572 256628.19064416536 257778.49562599685 242073.35559185417 232710.66596648245 218374.5620794714 192708.76810643758 211857.34025482237 1.0602611279033554 1.140548425624774 1.1275592319588488 1.2113254623865877 1.2167550830003833 1.1426243494829489 1.0984309804256849 1.0307623130584482 0.9096157247827578 1.0 17.69273358928814 1.6897550893477709 1.9479348477335618 0.9560922479287618 1.1529856147987387 0.7265360924040567 0.04749283897321816 0.15958920151936123 1.258362735758302 0.036051843235052 0.014175790464625037 48.95026974297239 -1.6897550893477709 0.19689336686997694 RRS(ph)S(ph)SPFLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RRSSSPFLSK 10 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 RRS(0.994)S(0.725)S(0.276)PFLS(0.004)K;RRS(0.998)S(0.865)S(0.137)PFLSK 123.1 0.0023172 3018940000.0 4230900.0 4586510.0 3003080.0 3681880.0 4031160.0 4713120.0 4575350.0 4607630.0 5973900.0 4811740.0 True False 4208121.304497176 4739169.212746157 3425887.560760706 4148005.630488342 4544504.331442724 4387313.1078910995 4354022.840965673 4951474.747671056 4501712.391158825 4504650.633662124 0.9341726244097469 1.052061435648646 0.7605223666314781 0.92082737770857 1.0088472338970713 0.9739519142962629 0.966561714781864 1.0991917354633292 0.9993477313243023 1.0 22.102983788875076 2.655015227421493 1.195114918292678 1.0336492684957514 0.9213751743634826 0.2315451106971419 0.07555229862995096 0.6425787116011843 1.8868251661739384 0.03906377820681189 0.033591534623228975 451.87178782178273 -2.655015227421493 -0.11227409413226885 RRS(ph)SS(ph)PFLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RRSSSPFLSK 10 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 RRS(0.989)S(0.017)S(0.992)PFLS(0.001)K;RRS(0.741)S(0.518)S(0.741)PFLSK 115.66 0.025649 606780000.0 1319810.0 1276670.0 902220.0 1156520.0 1175830.0 1361690.0 1348530.0 1325100.0 1817530.0 1373480.0 True False 1312704.2896046764 1319163.1891866894 1029244.7337631792 1302935.3134193344 1325564.9808095708 1267559.5753734745 1283296.45201513 1423985.6907214604 1369624.0851542377 1285823.3305046123 1.020905639571429 1.0259288021076685 0.8004557930670455 1.0133081913422792 1.0309075511091887 0.9857960617933644 0.998034816736067 1.1074505003441082 1.0651728372487521 1.0 20.294261002259024 2.4035273185362045 1.0877140913537808 1.0636133401003591 0.9651889097254184 0.17993200745096738 0.06886447637020666 0.75625732405839 1.7772721229877886 0.044612952384527435 0.029397590624976544 253.23709246429377 -2.4035273185362045 -0.09842443037494075 RRS(ph)TPAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSTPAPK 8 2 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 RRS(0.5)T(0.5)PAPK 61.958 0.06511 18529000.0 21904.0 22695.0 18435.0 19708.0 18028.0 17992.0 20105.0 21385.0 28265.0 22726.0 True False 21786.071297763192 23450.389355582785 21030.487760107495 22203.030779293225 20323.758939672316 16748.25538861235 19132.444341441576 22980.857290829685 21299.469481595625 21275.607223292514 1.0239929262235967 1.1022195093876954 0.9884788499518518 1.0435909323887766 0.9552610520757256 0.7872045771871731 0.8992666644313397 1.080150477005905 1.0011215782493383 1.0 14.376912687748879 3.2370122578330793 23.976967435219958 0.9547951583129194 1.0403960865952222 0.23354381060794893 0.07607273556288525 42.33681655480956 655612.7057506694 0.024502175512574394 0.030807165902177486 1725.8866039408122 -3.2370122578330793 0.08560092828230281 RRSS(ph)PSARPPDVPGQQPQAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSSPSARPPDVPGQQPQAAK 21 3 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 RRS(0.138)S(0.444)PS(0.418)ARPPDVPGQQPQAAK 147.52 5.4535e-07 697570000.0 108040.0 132130.0 116920.0 145350.0 134090.0 154200.0 164770.0 137490.0 224710.0 163630.0 True False 107458.32464437252 136527.86717572832 133381.3197131418 163751.29509692892 151165.56668630248 143540.51694775606 156799.44561747482 147750.20196007346 169333.23145973324 153186.99330930877 0.7014846516857809 0.8912497348913753 0.8707091694385816 1.0689634384708442 0.986804188924025 0.9370280977962995 1.023581978013446 0.9645087926084066 1.1054021480650296 1.0 17.224934281590247 5.4876968597617015 0.7566044005653406 1.0076081125421903 4.487185625441626e-16 0.7496469237522876 0.05462812573517969 3.5130248917451197 0.6740953870877398 0.01868398705498653 3.9017114402092323 307395.0429293627 -5.4876968597617015 -1.0076081125421898 RRSSPS(ph)ARPPDVPGQQPQAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRSSPSARPPDVPGQQPQAAK 21 3 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 RRS(0.077)S(0.36)PS(0.564)ARPPDVPGQQPQAAK 149.07 4.6528e-07 653720000.0 95841.0 136940.0 133860.0 124840.0 133670.0 159200.0 170850.0 140610.0 235190.0 205120.0 True False 95325.00270493602 141497.96511802182 152706.3244680222 140644.73119986642 150692.08217583777 148194.87871648988 162585.33278961942 151103.03220311276 177230.5758845384 192029.06598793282 0.49640923999977316 0.7368570189625023 0.7952250545113746 0.7324137649490239 0.784735797159516 0.7717314978025385 0.8466704347759331 0.7868758379140798 0.9229361970425647 1.0 17.550965171752626 6.383851792863648 0.12771067996706506 1.0563824863308773 1.6614725263744123e-13 0.7461179585990263 0.06326484401841483 30.82029182754665 0.39982108089058166 0.4095732477540737 5.584983966006568 2420202.9884286425 -6.383851792863648 -1.0563824863307112 down RRT(ph)AS(ph)PPPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTASPPPPPKR 12 3 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RRT(1)AS(1)PPPPPKR 77.74600000000002 0.05226 1396400000.0 224980.0 243940.0 170640.0 232920.0 248930.0 274490.0 267050.0 260720.0 339740.0 258480.0 True False 223768.73267762802 252059.39543515572 194664.62877053107 262407.6481181746 280629.759976294 255515.15237995776 254131.7712699317 280176.2503093347 256015.62928276343 241983.5851041383 0.9247269089815681 1.0416384042193658 0.8044538586646554 1.084402679649724 1.1597057703543165 1.0559193602739463 1.0502025216320579 1.1578316363432672 1.0579875869372974 1.0 17.884549660399248 3.6104388991631318 9.907969839460742 1.092234918084159 0.935568081321125 0.5023176845427394 0.07084243106744814 0.28416823265264246 21.335189210756702 0.01783323969029368 0.027637088254123386 4077.9218550316436 -3.6104388991631318 -0.15666683676303406 RRT(ph)NS(ph)SSSSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTNSSSSSPVVLK 14 2 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 2 RRT(0.567)NS(0.659)S(0.294)S(0.221)S(0.234)S(0.025)PVVLK 69.148 0.013822999999999998 0.0 286800.0 284480.0 230330.0 263480.0 248650.0 327340.0 325140.0 298400.0 390780.0 308090.0 True False 285255.90066647547 293948.74482820823 262758.46193575056 296836.54098478705 280314.10363598453 304711.7562754762 309411.73604458215 320668.12324449787 294477.5051837233 288427.4324308806 0.989004056453038 1.0191428129800058 0.9110037132085852 1.0291550234422366 0.9718704676371573 1.0564589980479682 1.0727541878969167 1.111780944488848 1.020976065632358 1.0 18.137848860755692 2.68284861406092 5.290810993445245 1.066060770459218 0.9844063293098587 0.3831081644141171 0.04166973481616241 0.1842217828899038 11.310427661947164 0.013247665351466162 0.012591264525845379 481.7798300172826 -2.68284861406092 -0.08165444114935927 RRT(ph)NSSS(ph)SSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTNSSSSSPVVLK 14 2 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 2 RRT(0.639)NS(0.367)S(0.16)S(0.441)S(0.254)S(0.14)PVVLK 125.03 0.0001033 126650000.0 205770.0 184430.0 153640.0 176230.0 182040.0 238610.0 217620.0 209150.0 279910.0 246040.0 True False 204662.15718319625 190568.64105971062 175271.1765371802 198540.6999307309 205221.71496438584 222115.4523275231 207092.88921086898 224757.83504218044 210929.9311018373 230337.51655455845 0.8885315785486441 0.8273452102387843 0.7609319539384065 0.8619555463675581 0.8909608735656243 0.964304276828096 0.8990844926550049 0.9757760629017792 0.9157428379752276 1.0 17.813389885737497 3.1104395451153435 2.1286325924595975 0.9475163873609086 0.8254045206670895 0.6508708902954932 0.04024063096363538 0.18696327765112242 1.7302395312311218 0.01267655468184654 0.015960591776959795 1289.5540362374754 -3.1104395451153435 -0.12211186669381913 RRT(ph)PT(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTPTPPPR 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RRT(1)PT(1)PPPR 65.295 0.077575 1550900000.0 71005.0 75134.0 58930.0 75286.0 79611.0 77154.0 75469.0 60034.0 73999.0 68872.0 True False 70622.71696939706 77634.78977053789 67226.83177125773 84817.1998807524 89748.98895863407 71820.5255809803 71818.27615042307 64514.041926475045 55762.93798579854 64476.529995714256 1.095324406789437 1.204078286714534 1.0426558590502044 1.3154740164582397 1.3919636953880687 1.1139018428217866 1.1138669552346694 1.0005817920220472 0.8648563747072786 1.0 15.976486482399768 1.8389986395544158 1.7440965509030162 0.9334134587403283 1.2027304116690578 0.5337582855771574 0.10112638271321824 0.28041919369141466 1.6218903344618467 0.07296513289190905 0.03179720423426158 69.02376416386448 -1.8389986395544158 0.2693169529287295 RRT(ph)S(ph)SKSEAGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTSSKSEAGAR 12 3 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 RRT(0.999)S(0.894)S(0.092)KS(0.015)EAGAR 66.335 0.046472 86917000.0 174810.0 136600.0 96992.0 120430.0 135770.0 145710.0 158080.0 148300.0 239940.0 166090.0 True False 173868.8423832168 141146.6484235561 110647.63053042289 135676.42565203377 153059.50472816234 135637.41066444563 150433.0664757567 159366.8990521414 180810.00203127728 155489.9940031968 1.1181995568129106 0.9077538997181657 0.711606114848445 0.8725733544580645 0.9843688380682265 0.8723224380705615 0.9674774730048794 1.0249334696666392 1.1628401119338903 1.0 17.246462218352608 1.7566803623855458 2.188419215619045 1.0819818505399381 0.9041597594041826 0.30079981114563026 0.10320955692017475 0.3436038987355522 3.32484892053407 0.06957561053752537 0.030145133972458948 57.10581872492327 -1.7566803623855458 -0.17782209113575553 RRTDEDAVLMDGMT(ph)ESDTASVNENGLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTDEDAVLMDGMTESDTASVNENGLGK 28 2 P51114-2;E7EU85;E9PFF5 P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 1 RRT(0.109)DEDAVLMDGMT(0.87)ES(0.015)DT(0.004)AS(0.003)VNENGLGK 89.751 0.0050135 215870000.0 94824.0 91633.0 85299.0 79377.0 84255.0 116100.0 99131.0 101350.0 139120.0 107510.0 True False 94313.4781199369 94682.94901168176 97308.35776780105 89426.12006129291 94984.37483148958 108074.2802700029 94335.65481280505 108913.25164487217 104835.740112492 100648.61975605813 0.9370568453747731 0.9407277441177498 0.9668126398916064 0.8884982255895294 0.9437225772365585 1.0737780660275553 0.9372771831491201 1.0821137131223957 1.0416013688670762 1.0 16.61896786244625 2.831974695792377 6.901024920377511 1.0284755248547337 0.9340576302192399 0.5458329135634685 0.041803111674795085 0.190875454802729 12.122227993337328 0.012397389678577559 0.013165191934241285 679.1640599084087 -2.831974695792377 -0.09441789463549377 RRTNS(ph)S(ph)SSSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRTNSSSSSPVVLK 14 2 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 2 RRT(0.455)NS(0.681)S(0.721)S(0.114)S(0.024)S(0.005)PVVLK 83.41799999999998 0.041997 464990000.0 277280.0 267540.0 210180.0 209360.0 224830.0 314920.0 307360.0 249330.0 375270.0 287640.0 True False 275787.1552887041 276444.90716865484 239771.51708269012 235864.9545338353 253460.76782818558 293150.32164194126 292491.82257077756 267936.27067208657 282789.7368603714 269282.5689390066 1.0241552447131133 1.026597853169139 0.8904086069418001 0.8759013086630925 0.9412446146322798 1.0886345996956854 1.08618921649187 0.9950004254927285 1.0501598301538198 1.0 18.038761319504175 2.7538642035285252 24.429472465071207 1.0431520610701608 0.9482128053231356 0.4256046707396197 0.05355460154618061 636.5876959723624 1016198.2431969789 0.018000268097260016 0.019024093376368557 567.3671716396132 -2.7538642035285252 -0.09493925574702522 RRVEHHDHAVVSGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RRVEHHDHAVVSGR 14 2 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 Apoptosis-inducing factor 1, mitochondrial 0 ;;; 146.47 4.9826e-06 555360000.0 244993.0 406071.0 417200.0 435168.0 452464.0 419456.0 366728.0 95512.8 463972.0 273772.0 False True 243673.9849092814 419586.82775989705 475938.13363259315 490260.2241812194 510082.6084357606 390459.9940132163 348987.9656029942 102640.45014017103 349632.31750627555 256299.6365719987 0.9507387063376871 1.637094899438253 1.8569598458985501 1.9128401067533212 1.9901807714521287 1.5234512199689747 1.3616405012145143 0.40047052548721684 1.3641545582451817 1.0 17.967471907353673 1.9893383409541565 4.622473931327002 0.8548646155409961 1.6709325627517333 0.4541107705304718 0.3508715907553977 0.1555382080746408 8.569631899368167 0.15351503786249887 0.09816800914759459 97.57495079643977 -1.9893383409541565 0.8160679472107372 RRVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_BT-474_Trastuzumab_2h_R1 7 RRVSEVEEEKEPVPQPLPSDDTR 23 3 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(0.997)EVEEEKEPVPQPLPS(0.003)DDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR 234.83 2.4583e-36 26304060000.0 8513790.0 7167930.0 7259010.0 6607940.0 6927520.0 9201150.0 8838710.0 8560110.0 13533250.0 9892830.0 True False 8467952.700611003 7406510.216944805 8281015.511554003 7444504.526472638 7809698.609372025 8565096.157677336 8411147.830148883 9198908.875557834 10198161.873759221 9261461.119722111 0.9143214651712626 0.7997129309513353 0.8941370486261323 0.8038153408234585 0.8432469249092258 0.9248104642406931 0.9081879977056211 0.9932459637463604 1.101139630337855 1.0 23.142808385259986 1.8551411881274962 1.3203771731745106 1.0511684408776474 0.8523719831223516 0.7416782880917087 0.04525141668165652 0.19834565054854916 0.6444773746270838 0.03310247938634362 0.013914973134281894 71.63762646206112 -1.8551411881274962 -0.19879645775529575 RRVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RRVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 34 3 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 RRVS(0.697)GPDPKPGS(0.101)NCS(0.101)PAQS(0.101)VLSEVPSVPTNGMAK 147.55 1.3313e-10 205280000.0 92733.0 98811.0 98868.0 102760.0 96363.0 136960.0 140830.0 109120.0 212200.0 141220.0 True False 92233.73583160482 102099.86440248926 112787.7550239385 115769.40546377993 108634.25686175076 127492.27756916109 134017.51487715592 117263.08850013261 159906.15333432134 132207.21869547534 0.6976452325500848 0.7722714796509331 0.8531134391665298 0.8756662957295993 0.821696862952527 0.9643367346137536 1.0136928694177463 0.8869643402016884 1.2095115146673452 1.0 17.01244142656108 3.802060920572822 0.3541074757342926 1.0576171464659399 0.5995577285734986 0.6584596094887771 0.0801981831017555 2.107890773721107 0.3434534253551959 0.08044704874426796 0.39215761832000884 6339.5863344232275 -3.802060920572822 -0.4580594178924412 RRVS(ph)HS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 RRVSHSPPPK 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK 77.91199999999998 0.016937 1545606000.0 1329897.0 1284659.0 800375.0 1097707.0 1123758.0 1304756.0 1323806.0 1197018.0 1797690.0 1430436.0 True False 1322736.982317448 1327418.0982222343 913060.8430157875 1236676.5936495666 1266861.920264493 1214561.288785254 1259768.4463499843 1286345.5614942422 1354673.3873118563 1339144.3498221256 0.9877478723583032 0.9912434745354757 0.6818240641026239 0.9234826654899679 0.9460234219206961 0.9069681613834836 0.9407264022861429 0.9605727430841219 1.0115962386667228 1.0 20.352880050186606 1.7633280180264772 0.9953763002223284 1.0083988930523176 0.8979305177745 0.18576789267447646 0.0816425135284829 0.9045657526350623 1.669089244006521 0.0725391780686929 0.02991376060563588 57.98664981024516 -1.7633280180264772 -0.11046837527781761 RS(ph)AS(ph)PERMD ddPTM_BT-474_Trastuzumab_2h_R1 2 RSASPERMD 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 RS(1)AS(1)PERMD;RS(1)AS(1)PERMD 99.732 0.0029138 1266400000.0 1599100.0 1870300.0 1420880.0 1697440.0 1752000.0 1878270.0 1836830.0 1757140.0 2140560.0 1860080.0 True False 1590490.6232767105 1932551.8048797753 1620927.5534896422 1912335.7299575554 1975106.8150824208 1748429.615871995 1747975.5155279844 1888266.709376126 1613047.6700344726 1741368.1019053925 0.9133569298394791 1.109789367776515 0.9308356755335273 1.0981800619094213 1.1342270556818361 1.0040551529334183 1.00379438076037 1.0843581591450988 0.9263105648194011 1.0 20.73178977096921 4.763659248057605 23.371862180015277 1.0370157656505776 0.9133565571805909 0.20803077165095285 0.06915091567790818 4576.882867988539 4261828.305858327 0.01565185464273813 0.9519001510645596 58030.89224689297 -4.763659248057605 -0.12365920846998668 RS(ph)ASASHQADIK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 RS(0.337)AS(0.337)AS(0.326)HQADIK 117.13 0.00046964 358770000.0 745370.0 754570.0 798380.0 695450.0 793950.0 1032500.0 901180.0 753780.0 1155800.0 1038000.0 True False 741357.0107383931 779685.4063028019 910784.9643566379 783493.8986939059 895054.8263896627 961125.705243567 857586.4805580865 810030.8912172826 870968.576926525 971753.9513234906 0.7629060933878313 0.8023485834463561 0.9372588226846772 0.8062677775858983 0.9210714555578944 0.9890628218537745 0.8825140143655578 0.8335761229620445 0.8962850891836356 1.0 19.89023154326649 4.374230763080255 5.066215362890893 0.8971778553076183 0.7720405082458532 0.4225790463039393 0.05825184355923751 0.19303683883206954 7.683377629573716 0.014429630483386113 0.04210239610812579 23671.77166819777 -4.374230763080255 -0.12513734706176505 RS(ph)ASPDDDLGSSNWEAADLGNEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 RS(0.646)AS(0.354)PDDDLGSSNWEAADLGNEER;RS(0.5)AS(0.5)PDDDLGSSNWEAADLGNEER 240.18 9.5446e-38 1976910000.0 327130.0 353400.0 320710.0 396330.0 392540.0 414230.0 416520.0 335260.0 457900.0 397860.0 True False 325368.76842755964 365162.7053651891 365863.18033870804 446505.33736336936 442527.6422331364 385595.25509253517 396371.3363390824 360278.8036157846 345056.6805456444 372468.2341749173 0.8735476976937611 0.9803861695054045 0.9822667996081851 1.1987742749457744 1.1880949880555935 1.0352433300700032 1.0641748744483264 0.9672739056898788 0.9264056606330624 1.0 18.50675786550828 -0.5012201685213008 5.864828700124929 0.9999999984203738 1.0291032150036512 0.0029014059070120446 0.09923131826120642 0.0 0.0 0.10248965861977928 0.024157044203846748 0.31534055778261727 0.5012201685213008 0.029103216583277414 RS(ph)ASPHDVDLCLVSPCEFEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR 167.78 5.4810000000000006e-12 996300000.0 92656.0 136149.0 112855.0 141321.0 124098.0 139194.0 145135.0 103289.0 168572.0 144801.0 True False 92157.15039104932 140680.6371611915 128744.00304675508 159212.2241100313 139901.1447135267 129571.84640743167 138114.26558045892 110996.94967091453 127029.68934907274 135559.6762096269 0.6798271651854587 1.0377764324521228 0.9497219722454029 1.1744807051901522 1.0320262531254962 0.955828827792892 1.018844758576154 0.818805066333081 0.937075780209422 1.0 17.04856857043359 -0.649859087150045 7.540337884666885 1.0000028861074446 0.9593965243842645 0.010148530955075175 0.12638960028179438 0.0 0.0 0.12131090483793212 0.02859325448092593 0.22394476404535693 0.649859087150045 -0.04060636172318011 RS(ph)DSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_BT-474_Trastuzumab_2h_R1 3 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 RS(0.424)DS(0.288)MT(0.288)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR;RS(0.457)DS(0.457)MT(0.087)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR;RS(0.407)DS(0.407)MT(0.185)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 251.47 2.8993999999999994e-52 2623520000.0 142995.0 190404.0 183366.0 210247.0 161932.0 177252.0 185308.0 119779.0 197265.0 169206.0 True False 142225.13080823806 196741.48203835162 209182.33895415635 236864.24864288932 182553.0803538397 164998.98644632706 176343.94409469588 128717.51720543773 148651.68396557457 158407.12821545507 0.8978455225499239 1.241998919207453 1.3205361482826716 1.495287815083182 1.1524297069860574 1.0416133939497103 1.113232378374061 0.8125740214819408 0.9384153708246527 1.0 17.27327773163275 2.3673417143967925 1.4994371171623357 0.914620622322048 1.2423344520038013 0.39217960732234614 0.15415277945371256 0.38177941045193436 1.7285825289025534 0.0834234862236491 0.056703010120878514 232.99237823502807 -2.3673417143967925 0.32771382968175333 RS(ph)ET(ph)PPHWR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSETPPHWR 9 1 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR 87.719 0.011487 2827230000.0 1272894.0 1315863.0 829106.0 1234923.0 1181975.0 1225013.0 1214681.0 1175991.0 1568781.0 1320397.0 True False 1266040.8801358189 1359660.704499019 945836.9180814581 1391264.125180493 1332492.510135301 1140330.7346804228 1155922.2394979652 1263749.419981301 1182175.9431384078 1236128.1330112533 1.0241987430960713 1.0999350861684831 0.7651609026787254 1.1255015463415778 1.0779566248438182 0.9225020483131756 0.9351152268350178 1.0223450031047843 0.9563538856271995 1.0 20.237396865380983 2.7261005962984766 24.628559553840063 0.9704157752051192 1.0149364619522545 0.06482560690892247 0.09654327045377285 2332.3442341826067 4610117.480893454 0.03119862996686205 0.029642658333371263 532.2315265966383 -2.7261005962984766 0.044520686747135274 RS(ph)FSKEVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 RSFSKEVEER 10 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 RS(0.5)FS(0.5)KEVEER 99.011 0.0026018 200530000.0 264630.0 176230.0 165100.0 201230.0 197110.0 258960.0 207210.0 215400.0 418170.0 301400.0 True False 263205.2614831572 182095.70901671526 188344.6449250744 226705.6973674234 222210.79013749806 241058.70472627005 197186.46068093064 231474.2417790375 315117.60669091943 282164.3939584778 0.9328082037235692 0.6453532512096892 0.6674996879754801 0.8034525341308105 0.7875224333591775 0.8543200697453814 0.6988353771877673 0.8203524141784534 1.1167872823007245 1.0 18.10617642161907 1.3325565483118704 4.998735635292144 1.0561661565198248 0.7668358086333474 0.635104662044501 0.0859690781676826 0.11748695619097903 4.429911136180721 0.06057429678438819 0.020918468786094428 21.505846829354766 -1.3325565483118704 -0.2893303478864774 RS(ph)GSPLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSGSPLEK 8 1 B1AKL4;Q9NRA8;Q9NRA8-3;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 RS(0.583)GS(0.417)PLEK 54.471 0.07965599999999999 536940000.0 118240.0 109570.0 95324.0 92592.0 89106.0 108500.0 117360.0 106710.0 171640.0 149420.0 True False 117603.40897769907 113216.97121353632 108744.7906289389 104314.13770632846 100453.12092735985 100999.65038152743 111682.84844126264 114673.24206240044 129341.62185816637 139883.88767510187 0.8407216222846763 0.8093639167113882 0.7773932540501914 0.7457194637641994 0.718117880457219 0.7220249026543498 0.7983968010716164 0.8197744855986819 0.9246355960493373 1.0 17.09387027175072 1.192762463225166 1.6108739779513008 0.9996931452267147 0.7687402329250561 0.8206270607553141 0.03580662626029366 0.15032034785576998 0.7303567042515753 0.03703473235301504 0.011038391906021136 15.586997409412948 -1.192762463225166 -0.2309529123016586 RS(ph)LSMDSQVPVYSPSIDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSLSMDSQVPVYSPSIDLK 19 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 RS(0.639)LS(0.356)MDS(0.005)QVPVYSPSIDLK 198.56 4.503300000000002e-16 247000000.0 396440.0 375430.0 387340.0 386740.0 312010.0 469600.0 457800.0 432340.0 695120.0 499120.0 True False 394305.6110886246 387925.96059777285 441874.10518036596 435701.2443466539 351742.6240718417 437137.6573194955 435654.4650341687 464603.4061780364 523816.99013078964 467265.7342818692 0.843857321775637 0.8302041689274906 0.9456591244797201 0.9324485242134734 0.752767854061517 0.9355226057637698 0.9323484113460979 0.9943023254039279 1.1210258996111342 1.0 18.833883719227437 1.809081646465054 1.5805229837526178 1.0579625463034839 0.8707980866083083 0.6012744645888937 0.06141284881577395 0.2548333721366191 1.2157761272065104 0.04507544101166888 0.018743105987242187 64.42903793900307 -1.809081646465054 -0.1871644596951756 RS(ph)NSPDKFK ddPTM_BT-474_Trastuzumab_2h_R1 5 RSNSPDKFK 9 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 RS(0.998)NS(0.002)PDKFK;RS(0.609)NS(0.391)PDKFK;RS(0.91)NS(0.09)PDKFK;RS(0.903)NS(0.097)PDKFK;RS(0.57)NS(0.43)PDKFK 131.69 0.00025674 15033500000.0 18940900.0 14951390.0 12471570.0 10966530.0 11009240.0 17466040.0 17653870.0 15378380.0 29068600.0 17000360.0 True False 18838924.298931826 15449037.977843883 14227458.65117026 12354891.573576348 12411201.457122149 16258653.76543569 16799884.863767467 16525992.805431372 21905033.02928393 15915382.470059557 1.1836928414615304 0.9706985054809097 0.8939438733524209 0.7762861870783627 0.7798242662700964 1.02156852315814 1.055575314974168 1.038366048476718 1.376343488476778 1.0 23.92391849168666 1.9362781181112718 1.528258618302452 1.1622698147147166 0.9202786784360881 0.29814116782773126 0.14269358237083898 0.48758212719689364 2.120820795920879 0.1012565060468993 0.04624145833278296 86.35313681233161 -1.9362781181112718 -0.24199113627862845 RS(ph)PERPTGDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 RSPERPTGDLR 11 2 Q5T200;Q5T200-2;Q5T9K0 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 RS(1)PERPTGDLR;RS(1)PERPTGDLR;RS(1)PERPTGDLR;RS(1)PERPTGDLR;RS(0.96)PERPT(0.04)GDLR 102.73 0.0022285 6954926000.0 5064950.0 5680340.0 5080940.0 5161450.0 5270910.0 5687570.0 5739110.0 5086740.0 6043180.0 5438810.0 True False 5037680.871968851 5869406.683061955 5796292.187677826 5814889.040784602 5942129.145368779 5294401.672999664 5461487.323770745 5466338.3687423505 4553919.26346326 5091700.489400493 0.9893906529765262 1.152739972683081 1.1383804290421435 1.1420328145556846 1.1670225217957424 1.0398101153084591 1.0726254097506414 1.0735781454784603 0.8943808208953483 1.0 22.279716126983477 1.3794420957644193 4.380954142482839 0.9488077350221271 1.1032483775347084 0.5193112764536998 0.05767662944638295 0.16275616575166257 4.817966600940461 0.042013174274141356 0.014569873541628219 23.95753304028627 -1.3794420957644193 0.15444064251258127 RS(ph)PESCSKPEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RSPESCSKPEK 11 2 Q03111 Q03111 MLLT1 Protein ENL 1 RS(0.98)PES(0.016)CS(0.004)KPEK;RS(0.793)PES(0.199)CS(0.008)KPEK;RS(1)PESCSKPEK 115.82 0.00055958 4435610000.0 2424320.0 1924260.0 1708210.0 1668750.0 1787440.0 2452950.0 2502390.0 2429570.0 3238820.0 2316690.0 True False 2411267.730487275 1988307.8308602653 1948711.1199725121 1880013.5788992094 2015059.8890130871 2283383.340123204 2381339.8356418833 2610876.850506481 2440656.2089644987 2168836.860781902 1.1117792094413097 0.9167622824998681 0.8985051643164941 0.8668303332973754 0.9290970314321495 1.0528147051595231 1.0979801564159004 1.203814310664757 1.1253295501832266 1.0 21.048490107353928 2.5001456909200943 2.47536897245243 1.1323108494802474 0.9362041884929236 0.4803800503779164 0.07830585732884997 0.21392058484710164 2.6396114859029 0.02990564201910436 0.025595980150907947 316.3338673943179 -2.5001456909200943 -0.19610666098732377 RS(ph)PGGGSEANGLALVSGFK ddPTM_BT-474_Trastuzumab_2h_R1 5 RSPGGGSEANGLALVSGFK 19 1 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 RS(0.991)PGGGS(0.009)EANGLALVSGFK;RS(0.983)PGGGS(0.017)EANGLALVSGFK;RS(0.971)PGGGS(0.029)EANGLALVSGFK;RS(0.981)PGGGS(0.019)EANGLALVSGFK;RS(0.961)PGGGS(0.039)EANGLALVSGFK 176.44 3.8442e-13 1914071000.0 1719815.0 1640775.0 1583466.0 1457699.0 1452155.0 1889020.0 1778970.0 1748807.0 2083630.0 1776660.0 True False 1710555.7071294081 1695387.2040055695 1806404.2490667948 1642243.5439387553 1637078.3316529782 1758436.4936747714 1692914.4247746519 1879311.858602011 1570147.3057115572 1663272.0377248474 1.028428103360193 1.0193084267349626 1.0860546008683791 0.987357153063875 0.9842517005770751 1.0572152082109776 1.0178217311284519 1.1298884463738594 0.9440111239165221 1.0 20.665592718334 1.1866672443049637 24.999999082825667 0.9720054450076125 1.0402110053928892 0.2725691660130294 0.04359161538821862 156.3573555553954 75322.34014536513 0.04298658576373018 0.010746680951315887 15.369765602070027 -1.1866672443049637 0.0682055603852767 RS(ph)PLGQK ddPTM_BT-474_Trastuzumab_2h_R1 4 RSPLGQK 7 1 A0A2R8Y6S3;C9J167;Q68D20;P54278-3;P54278 A0A2R8Y6S3 PMS2;PMS2CL Protein PMS2CL;Mismatch repair endonuclease PMS2 1 RS(1)PLGQK;RS(1)PLGQK;RS(1)PLGQK;RS(1)PLGQK 102.55 0.0052528 5721880000.0 6075300.0 5592400.0 5301820.0 4894910.0 4912060.0 5647300.0 6536200.0 5650100.0 8201800.0 6398800.0 True False 6042591.259829288 5778539.653322816 6048270.171754451 5514605.104113567 5537581.72493937 5256915.443314278 6220019.035291246 6071739.152626462 6180576.28848934 5990423.10571171 1.0087085925646617 0.9646296348939245 1.0096565910323738 0.9205702179626573 0.9244057768906895 0.8775532797177461 1.0383271641297962 1.0135743411575084 1.0317428634709165 1.0 22.514226474000125 2.198386061470405 24.999999768978668 1.021716665484706 0.9516286816329297 0.440897675256939 0.03860262963636624 153.63336735571727 95602.799874266 0.01527866494136352 0.011284199576297747 157.9014294003331 -2.198386061470405 -0.07008798385177639 RS(ph)PLPIDRPDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RSPLPIDRPDLR 12 2 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;Q9UQ26-2;D6RDY0;Q9UQ26-5;Q9UQ26-4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 RS(1)PLPIDRPDLR;RS(1)PLPIDRPDLR;RS(1)PLPIDRPDLR 90.453 0.0046187 606500000.0 312084.0 382307.0 339648.0 375896.0 338140.0 362595.0 355914.0 344148.0 416872.0 377697.0 True False 310403.7744197918 395031.85738553794 387467.4861266611 423484.3950585151 381200.1246871979 337529.66110681935 338697.08009648527 369830.0713081346 314139.48139861063 353592.0540973298 0.8778584553100564 1.117196647402041 1.0958037140167374 1.1976637770880074 1.0780788772540366 0.954573659661229 0.9578752581449567 1.0459230263311718 0.8884234749012221 1.0 18.43172632936078 2.749958070558036 20.956314198172475 0.9773337135997119 1.083915001319345 0.2699313971306474 0.08408394170528401 114.00960288503218 209625.70323977157 0.025814318806694186 0.027059892798906547 562.2870359447711 -2.749958070558036 0.10658128771963316 RS(ph)PPAPGLQPMR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSPPAPGLQPMR 12 1 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR 122.93 0.00021423 3777460000.0 2316420.0 3132350.0 2862860.0 2757680.0 2587440.0 2914260.0 2917240.0 2711950.0 3697580.0 2987240.0 True False 2303948.6520984587 3236608.376204441 3265925.8035747963 3106802.0052486984 2916935.147041591 2712804.0656301393 2776121.9562609824 2914329.4800030664 2786360.9540335517 2796591.785695165 0.823841600294822 1.1573402999894382 1.1678235702043895 1.1109243834371139 1.0430321514788086 0.9700393455728477 0.9926804371167477 1.0421004219887011 0.9963416785696272 1.0 21.415238250476985 2.99740774989814 8.011018578330262 1.0054797983855985 1.078791424382674 0.0938063920199752 0.09110657021923305 0.257118996857736 149.78212746166477 0.026843130284095976 0.030670968870393053 994.0489019112821 -2.99740774989814 0.07331162599707541 RS(ph)PPEEPPDFCCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPPEEPPDFCCPK 14 1 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9;Q9Y6K9-2;Q9Y6K9-3 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 RS(1)PPEEPPDFCCPK 83.39299999999999 0.0052356 197100000.0 208310.0 194800.0 156910.0 162110.0 160280.0 193650.0 195060.0 168590.0 254330.0 208720.0 True False 207188.48210541683 201283.80024091306 179001.56411383074 182633.10937848728 180690.70794601072 180263.4313030671 185624.20259843802 181171.0418826739 191653.77934739835 195399.31090581787 1.0603337398936956 1.0301152000373814 0.9160808361300168 0.9346660872643309 0.9247254102810185 0.9225387257888221 0.9499736807562672 0.9271836274284407 0.9808313983245066 1.0 17.576065853951338 4.338106233146453 4.939772150174384 0.9398835669866574 1.0525230280001951 0.7039201547174136 0.02620717381992822 0.09078058538781378 3.548029438752339 0.005960255277594368 0.01726423716757115 21782.425289684783 -4.338106233146453 0.11263946101353772 RS(ph)PPPGPDGHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPPPGPDGHAK 12 1 P57081;P57081-2;P57081-3 P57081 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 RS(1)PPPGPDGHAK 53.981 0.064755 39657000.0 74004.0 66310.0 62382.0 59710.0 58442.0 75658.0 72814.0 72642.0 91125.0 76477.0 True False 73605.57068661737 68517.08826475852 71164.84336593578 67269.27987779568 65884.24228712726 70427.94053977514 69291.70864350788 78062.91490860184 68668.46476244132 71596.17238474624 1.0280657224393637 0.9569937328012282 0.9939755296345653 0.9395653096690904 0.9202201750824891 0.9836830405025954 0.9678130315562884 1.090322461501215 0.9591080427236822 1.0 16.127594840933522 1.8898204874458742 24.999999807091054 1.0271529615366477 0.967891556275927 0.19538551236757662 0.04135479135774887 30.56519673927835 6910.56388520027 0.016574411706859245 0.010696965234187058 77.59263266729167 -1.8898204874458742 -0.059261405260720657 RS(ph)PPWEP ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPPWEP 7 1 F5H8F7;Q9UBL3-2;Q9UBL3-3;Q9UBL3;H0YAQ0 F5H8F7 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 1 RS(1)PPWEP 93.429 0.015828000000000002 3601800000.0 1289400.0 1516400.0 1273200.0 1342800.0 1287400.0 1474900.0 1472700.0 1302400.0 1489000.0 1396000.0 True False 1282458.0136658084 1566872.4573168429 1452455.4931472144 1512798.3423196157 1451342.758982371 1372943.6345411504 1401459.8747396665 1399591.7014531966 1122055.9015777772 1306906.084824269 0.9812931690789795 1.1989174092241905 1.111369447287038 1.1575417391396043 1.1105180210233114 1.0505296826479777 1.0723493378853703 1.0709198753492608 0.8585589390140859 1.0 20.31772404111826 1.3727213155792275 5.190881893221357 0.9311699487411145 1.1000673589962078 0.5160244285551991 0.06403449887385798 0.15115527756803593 5.760003475010768 0.043296944877536596 0.015371390842397893 23.589640129470663 -1.3727213155792275 0.1688974102550933 RS(ph)PQEGGSHVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSPQEGGSHVGR 12 1 Q8TC76 Q8TC76 FAM110B Protein FAM110B 1 RS(1)PQEGGSHVGR;RS(0.999)PQEGGS(0.001)HVGR 73.593 0.023753 190086000.0 41644.0 47196.0 46233.0 46019.0 45129.0 46618.0 44601.0 40756.0 49461.0 40956.0 True False 41419.793331083376 48766.890329415546 52742.20453556009 51845.000681565616 50875.91064946043 43395.40738696811 42443.479237634245 43797.41967477462 37271.99929344425 38342.15301580432 1.0802678011850426 1.2718871136243768 1.3755671079248 1.3521671738203 1.3268923794782677 1.1317937041532562 1.106966508118086 1.1422785688827042 0.9720893680143898 1.0 15.226643730066545 2.5906094654176504 3.5140655159286736 1.0792928445397911 1.2897326034679812 0.5845258397371109 0.08940806463240271 0.1962246234981096 4.456711292828855 0.031966698064935115 0.02953542671079667 389.59149320475876 -2.5906094654176504 0.2104397589281901 RS(ph)PRPDHPGTPPHK ddPTM_BT-474_Trastuzumab_2h_R1 5 RSPRPDHPGTPPHK 14 2 P30291 P30291 WEE1 Wee1-like protein kinase 1 RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK 138.77 6.405800000000001e-06 446532000.0 407928.0 443964.0 386774.0 420314.0 412637.0 447728.0 486691.0 329717.0 530876.0 436677.0 True False 405731.7609730612 458741.073358095 441228.4173001257 473525.70930423436 465183.8760588845 416777.6171983458 463147.8969898307 354322.15680900164 400048.7231739452 408807.9000020116 0.9924753434830019 1.1221433669844387 1.0793050166054876 1.1583086072991844 1.1379033430043681 1.0194950175774367 1.1329230599202014 0.8667204249410496 0.9785738562585916 1.0 18.64106355031998 1.7465228972177815 24.999999999999844 0.9402337224567787 1.0940315270471854 0.5516117364726074 0.059069039522160104 1.1726981171237296 3691.715389206685 0.026062699426579964 0.014453097527038846 55.78570131453354 -1.7465228972177815 0.1537978045904067 RS(ph)PS(ph)PYSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPSPYSLK 9 1 F6XDC4;E9PSF3;E9PI60;Q9ULD4-3;Q9ULD4-2;Q9ULD4;A8WI62;A8WI61 F6XDC4 BRPF3 Bromodomain and PHD finger-containing protein 3 2 RS(1)PS(1)PYSLK 88.552 0.044467 190960000.0 257070.0 244860.0 183130.0 222960.0 223440.0 277580.0 257550.0 247270.0 315100.0 257440.0 True False 255685.9636831617 253010.01707900417 208913.1122055052 251186.71313939642 251893.75956736106 258391.54795303583 245091.32256345602 265722.54301161837 237447.827123679 241009.9587945274 1.0608937695439644 1.049790715472913 0.866823567168914 1.042225451577896 1.045159132955633 1.0721197963994802 1.016934419595533 1.1025376060835712 0.9852199814121154 1.0 17.878733235857332 3.5218404168046398 24.998040838151535 1.0461319393651267 0.9909470044813329 0.10002196714380507 0.0585752438119734 820.8941480014535 458877.8901828301 0.015353508894852423 0.023784231117240994 3325.373387036774 -3.5218404168046398 -0.055184934883793835 RS(ph)PSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RSPSLSSK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RS(0.984)PS(0.016)LSSK;RS(0.999)PS(0.001)LSSK;RS(0.995)PS(0.005)LSSK;RS(0.998)PS(0.002)LSSK 87.713 0.0092665 978150000.0 890337.0 1041600.0 854297.0 822491.0 829950.0 978578.0 1027270.0 932100.0 1180150.0 1025370.0 True False 885543.5245177404 1076269.0263395035 974574.5919173622 926618.2762680968 935639.2130009452 910931.2061848326 977577.0255475106 1001658.0351078948 889317.8456998077 959930.0087365777 0.9225084292168948 1.1211953127249836 1.0152558864161974 0.9652977486219807 0.9746952428671304 0.9489558591711958 1.0183836494851946 1.0434698634187276 0.9264403004447096 1.0 19.872569693052082 3.9931325342377297 24.89365180359117 0.988292241923124 1.0334452853566913 0.07442562735801295 0.05493707896645113 663.7556747846749 2406063.5804562345 0.013414764850946313 0.027327616189378578 9843.114435935617 -3.9931325342377297 0.0451530434335673 RS(ph)PSPEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPSPEEK 8 1 P25686 P25686 DNAJB2 DnaJ homolog subfamily B member 2 1 RS(0.818)PS(0.182)PEEK 53.567 0.083159 311740000.0 448170.0 436620.0 404360.0 375540.0 426070.0 478430.0 483800.0 413130.0 592920.0 490150.0 True False 445757.10251636826 451152.6327576366 461290.37323987397 423083.3254950163 480327.4889852559 445357.26020307996 460396.74570452265 443959.8584316329 446802.81072095095 458868.2073614723 0.9714272973486354 0.9831856413670478 1.0052785654781562 0.9220149025529099 1.0467656753715322 0.9705559310023213 1.003331105355587 0.967510608295215 0.9737061830674687 1.0 18.807720327665855 4.72069174059763 5.493405534613235 0.9849074331339888 0.9710646388851385 0.01884824799344409 0.030658603665673013 0.7668398392834842 82.8524377478803 0.006747639494865777 0.03749961758384078 52564.40352258743 -4.72069174059763 -0.013842794248850265 RS(ph)PSPYYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 RS(0.774)PS(0.265)PY(0.206)Y(0.013)S(0.743)R 77.89399999999998 0.020926 146180000.0 219150.0 235290.0 197610.0 238880.0 249310.0 271040.0 248890.0 226730.0 280540.0 256190.0 True False 217970.1207498542 243121.48541419161 225431.77034308866 269122.1835070817 281058.1507238575 252303.64275953142 236850.2398478685 243649.7439116117 211404.6760434048 239839.73486470617 0.9088157175991349 1.0136830978041929 0.9399266992613002 1.1220917320430404 1.1718581613776495 1.0519676520733987 0.9875354472914004 1.0158856456752454 0.8814414182147857 1.0 17.87171116798205 -0.6794338280513329 5.330954719836411 0.9999999992655172 1.0166711483817892 0.0 0.08550460251344842 1.2699384423193073e-09 2.382197036480202e-10 0.08522411922931686 0.02008751589626659 0.20920216369241654 0.6794338280513329 0.016671149116271988 RS(ph)PSPYYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 RS(0.938)PS(0.061)PYYSR;RS(0.868)PS(0.131)PYYSR 69.229 0.034198 558750000.0 188786.0 318520.0 341540.0 408940.0 377650.0 345470.0 331970.0 267442.0 158480.0 327440.0 True False 187769.59715209625 329121.745650594 389625.8632811025 460711.76207043766 425741.4889930809 321588.47204890574 315911.34285144834 287399.8800829591 119424.72752320093 306542.4988645118 0.6125401790865163 1.0736578023266588 1.271033754615906 1.5029294919203582 1.3888498024583982 1.0490828294286336 1.0305629530053433 0.9375531325918579 0.3895862008223051 1.0 18.22572757657697 1.6474356190483368 2.217009773570762 0.6964059250526488 1.1678070380790666 0.2906292064707867 0.2671986252668853 0.3298424621932731 3.544246802573063 0.1977935466664795 0.0770203775908446 44.40538287833022 -1.6474356190483368 0.47140111302641785 RS(ph)PTEDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSPTEDFR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 RS(0.5)PT(0.5)EDFR;RS(1)PTEDFR;RS(0.968)PT(0.032)EDFR;RS(0.5)PT(0.5)EDFR 91.469 0.0093633 2012270000.0 1855020.0 2264730.0 2012498.0 2043823.0 1910860.0 2011100.0 1967915.0 1864905.0 2197070.0 1977810.0 True False 1845032.7784320975 2340110.168991804 2295840.2254538015 2302570.7822421067 2154196.6944454326 1872077.3906201825 1872719.4332846554 2004073.680895709 1655631.537729677 1851584.4725116666 0.9964615743019913 1.2638419708810014 1.2399327492412506 1.2435677747495253 1.163434197265261 1.0110677737973883 1.0114145269020967 1.0823560634947382 0.8941701349892073 1.0 20.820328938598077 2.790280579405598 4.037767936428809 1.0113538283841292 1.1959063533768566 0.5465151755147384 0.08229307889238098 0.1762474937785081 6.051198144903651 0.02580390155206601 0.02686037650607857 616.9934866767976 -2.790280579405598 0.18455252499272734 RS(ph)PVPAQIAITVPK ddPTM_BT-474_Trastuzumab_2h_R1 6 RSPVPAQIAITVPK 14 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK 121.99 6.8213e-05 5523460000.0 8265910.0 8084780.0 7754450.0 7549040.0 8055220.0 8982820.0 8538490.0 8850970.0 11369240.0 8852910.0 True False 8221407.258988935 8353877.014947287 8846209.157112315 8504747.689979492 9081004.519970465 8361858.796683787 8125450.618500641 9511474.325714985 8567443.142010838 8287909.70444243 0.9919759688721211 1.0079594629837119 1.0673631196018736 1.0261631693961184 1.0956929845776342 1.0089225262917283 0.9803980627522149 1.1476324748828655 1.033727857510148 1.0 22.982576854483927 4.357476372284365 5.063082115018892 1.051582664425655 0.9958700550785466 0.11936001328173662 0.04687969689705872 0.3554635262289693 13.864247536688824 0.011672363422542931 0.03386073608187342 22775.943263639787 -4.357476372284365 -0.05571260934710831 RS(ph)PVSTRPLPSASQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSPVSTRPLPSASQK 15 2 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 RS(1)PVSTRPLPSASQK;RS(1)PVSTRPLPSASQK 179.87 3.4049e-07 2323820000.0 1465460.0 1318920.0 1251430.0 1148850.0 1149120.0 1512380.0 1524180.0 1422250.0 1754790.0 1475470.0 True False 1457570.1261879124 1362819.4548960223 1427620.4663754464 1294294.292205755 1295453.6206321411 1407832.730359578 1450449.5904669696 1528385.5170391654 1322345.5174813082 1381304.2413865812 1.0552129520175613 0.9866178746602534 1.033530791842333 0.9370088452827134 0.9378481451209754 1.0192053916712562 1.0500580154673085 1.1064800000215311 0.9573166271855583 1.0 20.39759968703582 2.485370009196431 11.54476355481098 1.0438953469818617 0.9882409635615805 0.08875500634832789 0.05008066254998678 0.6180696724513022 848.8157226401382 0.017230847700158078 0.015234827619285199 305.7524946803471 -2.485370009196431 -0.05565438342028117 RS(ph)QSPINCIRPSVLGPLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSQSPINCIRPSVLGPLK 18 2 Q96E09 Q96E09 FAM122A Protein FAM122A 1 RS(0.5)QS(0.5)PINCIRPSVLGPLK 48.64100000000001 0.08504199999999999 609910000.0 330760.0 276610.0 301380.0 298860.0 238370.0 321920.0 304110.0 310960.0 404080.0 323090.0 True False 328979.2249108908 285816.79663572425 343811.6843580794 336695.6453571941 268725.0065703178 299666.4281181683 289399.03748698323 334165.4142228851 304499.8983945925 302470.1195887343 1.0876420631505705 0.9449422542112477 1.1366798308062853 1.1131534110377446 0.8884348871739813 0.9907306828377688 0.9567855425867399 1.104788184291548 1.006710675449919 1.0 18.206433102938508 RS(ph)S(ph)LSSHSHQSQIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSLSSHSHQSQIYR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 RS(0.991)S(0.869)LS(0.13)S(0.011)HSHQSQIYR;RS(1)S(0.994)LS(0.006)S(0.001)HSHQSQIYR 127.37 8.0132e-05 659730000.0 205345.0 266930.0 253730.0 367300.0 320020.0 339690.0 329200.0 209780.0 316070.0 315400.0 True False 204239.44533597433 275814.60368740757 289452.97853930475 413800.14233988273 360772.6500928518 316208.0298442491 313275.33833387546 225434.84884125573 238178.78362101302 295270.90197247494 0.6917019048325103 0.9341069568484568 0.9802963197717581 1.401425401472364 1.221836109426329 1.0709081989857772 1.060975992693919 0.7634848111862736 0.8066449556320181 1.0 18.17167966481176 1.751275491894475 24.9498951306893 0.8385986827644412 1.065089467342604 0.18825828536781364 0.18281691382731596 5.751973444684777 11304.827983084608 0.09090294484113051 0.050410301178715554 56.39953091514304 -1.751275491894475 0.22649078457816274 RS(ph)SAIGIENIQEVQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSAIGIENIQEVQEK 16 1 J3KPC5;P47736-3;P47736;P47736-4;F2Z357;X6R8W7;P47736-2;A0A0A0MQY8 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 RS(0.665)S(0.335)AIGIENIQEVQEK;RS(0.688)S(0.312)AIGIENIQEVQEK 241.6 4.0045e-20 3898900000.0 3318700.0 2526500.0 2390800.0 2544000.0 2271100.0 2914700.0 2789500.0 2979600.0 3833900.0 3144400.0 True False 3300832.487942233 2610593.0251985 2727403.8587938747 2866070.139157806 2560311.1231356678 2713213.649465786 2654561.2280751737 3201952.882102228 2889086.716627965 2943721.699943718 1.1213126865917191 0.886834181793888 0.9265155258549138 0.9736212968816323 0.8697531166701727 0.9216950262375891 0.9017704452584383 1.0877226886507128 0.9814401669434997 1.0 21.48920985447945 1.747404105965955 24.999999999999876 1.0289987834194385 0.9378046615406108 0.20664582154059108 0.07100965597058526 2.7777339715239737 7870.956086272486 0.03132011093505893 0.017368804075567994 55.8990086598967 -1.747404105965955 -0.0911941218788277 RS(ph)SDPALIGLSTSVSDSNFSSEEPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 RS(0.604)S(0.396)DPALIGLSTSVSDSNFSSEEPSR;RS(0.513)S(0.487)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR 326.82 4.5363999999999994e-95 5724010000.0 620419.0 700391.0 681369.0 776718.0 839579.0 796141.0 865037.0 748883.0 785457.0 679711.0 True False 617078.733039031 723703.0910397004 777299.8326344824 875050.419161309 946494.4090753905 741105.646584327 823191.8555477555 804768.4522108217 591891.6469345709 636331.2620501355 0.9697444866230891 1.1373055736851116 1.2215333097578351 1.3751491893421468 1.4874240282112963 1.1646538379972544 1.2936530147765983 1.2647004794609875 0.9301627662101829 1.0 19.27941847532361 1.2409117871336952 24.971395501282974 0.9650812907451559 1.2489402686576534 0.4048110312735006 0.1325735240479283 57.02157676809557 605673.1896189108 0.10395915643694462 0.033892292897856884 17.414531176341264 -1.2409117871336952 0.2838589779124975 RS(ph)SDPLGDTASNLGSAVDELMR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSSDPLGDTASNLGSAVDELMR 22 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR 155.8 1.011e-08 183072000.0 125608.0 153422.0 141113.0 145254.0 157596.0 150727.0 153207.0 121717.0 165525.0 163230.0 True False 124931.74048436063 158528.55852444252 160980.48382381594 163643.14150677205 177664.9164553251 140307.59726319343 145795.79210242417 130800.1406064024 124733.58167136437 152812.52165176618 0.817549106146281 1.0374055529670678 1.0534508696261369 1.0708752119128497 1.1626332353849465 0.9181681955548816 0.9540827579212916 0.8559517190906236 0.8162523615414911 1.0 17.221403238914892 2.5096682555920844 23.25813868499255 0.8980019571534087 1.033413806036328 0.28884336057939786 0.09333588823952964 327.7707094854519 234224.90138975045 0.030561814723451687 0.028783770832509787 323.3465679147374 -2.5096682555920844 0.13541184888291935 RS(ph)SDSWEVWGSASTNR ddPTM_BT-474_Trastuzumab_2h_R1 5 RSSDSWEVWGSASTNR 16 1 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 RS(0.496)S(0.496)DS(0.007)WEVWGSASTNR;RS(0.495)S(0.495)DS(0.011)WEVWGSASTNR;RS(0.5)S(0.5)DS(0.001)WEVWGSASTNR;RS(0.5)S(0.5)DSWEVWGSASTNR;RS(0.499)S(0.499)DS(0.002)WEVWGSASTNR 234.73 6.7556e-20 3036260000.0 1074421.0 1136974.0 1129762.0 1175588.0 1058455.0 1177528.0 1230868.0 969127.0 1336777.0 1362930.0 True False 1068636.4367153938 1174817.4922747025 1288822.6695326602 1324417.320264248 1193242.9702957002 1096128.2609627566 1171326.2124676206 1041448.1778671924 1007346.2202440808 1275946.6405369225 0.837524393861571 0.9207418672150236 1.0100913538126637 1.0379880146923142 0.9351825008870118 0.8590706116844371 0.9180056400906568 0.8162160899055682 0.7894893001326342 1.0 20.28313656688902 2.8150805805671792 4.4708363335566865 0.8646479236740799 0.9568528151330793 0.18245311728440072 0.07368870464220935 0.3234941506720181 12.125014768993145 0.023562634824500096 0.024880438331949434 653.2517480929951 -2.8150805805671792 0.09220489145899935 RS(ph)SFSMEEES ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSFSMEEES 10 1 P19532 P19532 TFE3 Transcription factor E3 1 RS(0.498)S(0.498)FS(0.003)MEEES 113.22 0.0016064 529860000.0 213820.0 285890.0 251360.0 245610.0 246360.0 260040.0 270230.0 245360.0 273620.0 278900.0 True False 212668.8168776355 295405.67582584586 286749.3031397138 276704.20081703964 277732.485709878 242064.04686831703 257157.94252115214 263670.009112835 206190.0173201556 261100.36322169667 0.81450984691684 1.1313874564587298 1.0982340261864707 1.0597618379492408 1.063700112412556 0.9270919575963357 0.9849007460123789 1.0098416021311944 0.7896964017054336 1.0 17.99424493904956 2.7405484469735133 24.9527556098696 0.9520304016312818 1.0440090661302848 0.16851608367803672 0.0987821041018283 312.7743955185909 3926199.590489005 0.030096502079029353 0.03049987407829889 550.2352976389213 -2.7405484469735133 0.09197866449900294 RS(ph)SGFISELPSEEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 RSSGFISELPSEEGK 15 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 RS(0.479)S(0.479)GFIS(0.042)ELPSEEGK;RS(0.488)S(0.488)GFIS(0.024)ELPSEEGK;RS(0.476)S(0.476)GFIS(0.048)ELPSEEGK;RS(0.499)S(0.499)GFIS(0.002)ELPSEEGK;RS(0.499)S(0.499)GFIS(0.002)ELPSEEGK;RS(0.498)S(0.498)GFIS(0.004)ELPSEEGK 136.68 1.3086e-05 1405120000.0 1250772.0 993404.0 1003784.0 1008422.0 1192206.0 1909330.0 1882660.0 1588640.0 2502500.0 1837820.0 True False 1244037.9825258318 1026468.8516146006 1145108.062153065 1136088.1218041636 1344026.3673414122 1777342.5111793696 1791588.5433403817 1707192.3837504645 1885792.4067819952 1720528.7541631367 0.7230556185217204 0.5966008118904551 0.6655558992444996 0.6603133595153169 0.7811705349819307 1.0330211028898886 1.0413011343200762 0.9922486791456392 1.0960539905066815 1.0 20.714420572495793 2.889878531188925 2.590787928604307 1.0323188666702567 0.6571616345780783 0.9515111235876668 0.03985815206758493 0.053860889668886545 0.7067415424368995 0.012784159191528909 0.013941986108965377 776.0300366669403 -2.889878531188925 -0.37515723209217844 RS(ph)SLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHK 49 3 Q93052;A0A087WZF1;C9JUT4 Q93052 LPP Lipoma-preferred partner 1 RS(0.388)S(0.388)LDAEIDS(0.074)LT(0.121)S(0.029)ILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHK;RS(0.382)S(0.306)LDAEIDS(0.114)LT(0.18)S(0.018)ILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHK 173.02 4.7497e-22 34185600000.0 1827730.0 1756230.0 1718840.0 1522200.0 1566900.0 2074470.0 2018380.0 2043490.0 2516600.0 2274700.0 True False 1817889.7047598949 1814685.0538865482 1960837.7315748923 1714910.3639253175 1766435.4272560778 1931066.7716771148 1920743.2484396338 2195985.6004319643 1896417.6507123157 2129526.69853135 0.8536590341946034 0.8521541688761471 0.9207856999056194 0.8053011803552512 0.829496727359332 0.90680561695183 0.901957815210438 1.0312082971049146 0.890534808518813 1.0 21.02210138683737 2.163713601532939 2.119347136716051 0.9750626193732942 0.8557371966979009 0.5424514743877474 0.045955054649569095 0.22682423873486104 2.02330302321971 0.022184800619376374 0.013750927739548632 145.7852552369073 -2.163713601532939 -0.11932542267539326 RS(ph)SLGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSLGAK 7 1 A0A590UJL1;F8W6W8;Q9UJD0;Q9UJD0-2;D6RA03 A0A590UJL1;D6RA03 RIMS2;RIMS3 Regulating synaptic membrane exocytosis protein 3 1 RS(0.618)S(0.382)LGAK 73.067 0.030564 227580000.0 225220.0 162630.0 154060.0 145910.0 141180.0 126150.0 163610.0 155100.0 236610.0 208190.0 True False 224007.44054429454 168043.04123808886 175750.30888647484 164382.1910395107 159158.43616058 117429.54742515845 155695.5592491049 166674.3495818419 178300.63591156367 194903.13595957347 1.1493270205296124 0.8621874676913568 0.9017315602501579 0.8434045467262601 0.8166027466771618 0.6025020933963603 0.7988355779016252 0.8551650478133572 0.9148166602539763 1.0 17.57239777794656 RS(ph)SLGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSLGEK 7 1 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 RS(0.625)S(0.375)LGEK;RS(0.712)S(0.288)LGEK 72.006 0.029652 247570000.0 408320.0 380800.0 319110.0 319360.0 321510.0 336800.0 368000.0 414920.0 588120.0 457080.0 True False 406121.65048861655 393474.6978015389 364037.91424615716 359790.94325528125 362452.3927609305 313517.8087419208 350198.43410348217 445883.43732106866 443185.70640424616 427908.76307412423 0.949084677703285 0.919529422521734 0.850737226391171 0.8408122812688383 0.8470319470838809 0.7326744292161455 0.8183950980289209 1.0420058568509165 1.0357014033093677 1.0 18.70694369841838 1.7159987451872016 6.700193778885865 1.0279719108987093 0.8487340920256978 0.673869050034072 0.05555474171497483 0.08151804040287906 9.119150610142674 0.030751998703511887 0.015927301634739426 51.99944941043669 -1.7159987451872016 -0.1792378188730115 RS(ph)SLLSLMTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSLLSLMTGK 11 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 RS(0.5)S(0.5)LLSLMTGK 172.57 0.00035777 0.0 533680.0 458370.0 429360.0 422190.0 364950.0 504510.0 438880.0 450740.0 655960.0 583500.0 True False 530806.7261774222 473626.56835948414 489810.15593597793 475639.21071188437 411424.21927187766 469634.4111887963 417649.6977155869 484376.5076113428 494307.44741367304 546260.530440517 0.9717098281828407 0.8670342116380637 0.8966603454600387 0.8707186117370003 0.753164829500121 0.8597260556424832 0.7645613666775167 0.8867133549274199 0.904893214626091 1.0 19.05922966061596 0.9316038224264803 2.04399622693903 0.9989329641666798 0.8533085338311662 0.34668024455807944 0.05926968876335573 0.4294432071782672 3.807581238673057 0.05657725920275577 0.015716699638005767 8.542870488469557 -0.9316038224264803 -0.14562443033551353 RS(ph)SLPSFETLDYGDEEDIETQLSSSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSLPSFETLDYGDEEDIETQLSSSGK 27 1 K7EQI2;A0A0C4DGP8;K7EJF0;Q96ST8-3;Q96ST8;K7EPU8 K7EQI2 CEP89 Centrosomal protein of 89 kDa 1 RS(0.412)S(0.412)LPS(0.087)FET(0.087)LDY(0.002)GDEEDIETQLSSSGK 61.82899999999999 0.025698 50151000.0 15154.0 14426.0 12565.0 15130.0 13205.0 17215.0 17105.0 15971.0 18311.0 17926.0 True False 15072.412547767686 14906.160689298844 14334.042783062161 17045.45644868615 14886.57847783299 16024.967569751094 16277.565802554496 17162.837119094744 13798.49940482921 16781.94733277927 0.898132513997798 0.8882259247818903 0.854134654270083 1.015701939154116 0.8870590630895285 0.9548932106615775 0.9699449938542238 1.0226963998135963 0.822222780897265 1.0 14.034622511557174 3.754423871960365 24.976771724018324 0.9565833069301094 0.8809705182972006 0.24717372459542708 0.05821174122508229 1097.0604302855163 1727321.4098030925 0.014518372027229515 0.026066877995653846 5680.988000603307 -3.754423871960365 -0.07561278863290877 RS(ph)SLSLEEADSEVEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSLSLEEADSEVEGR 16 1 Q5JTZ5 Q5JTZ5 C9orf152 Uncharacterized protein C9orf152 1 RS(0.499)S(0.499)LS(0.002)LEEADSEVEGR;RS(0.479)S(0.479)LS(0.041)LEEADSEVEGR 135.98 1.2197e-05 449250000.0 90542.0 127552.0 96102.0 98560.0 98169.0 98709.0 115758.0 97785.0 174276.0 92680.0 True False 90054.53193216184 131797.49121318787 109632.3262664415 111037.68589441552 110670.24025675036 91885.47916599242 110158.34330149688 105082.21324216879 131328.0149787568 86765.08305266002 1.037912127364707 1.5190153293946194 1.2635535218689613 1.2797508166623182 1.2755158684004448 1.0590144783267792 1.2696160647323862 1.2111117692170204 1.5136044403835858 1.0 16.404826953998707 2.976506921698305 24.49722358287615 1.2213387194516445 1.2899082375467406 0.030952753658212262 0.16732733653962528 2352.99661830277 2453570.9010871765 0.048356745211699026 0.051612491934908 947.3422829351383 -2.976506921698305 0.06856951809509604 RS(ph)SLSSHSHQSQIYR ddPTM_BT-474_Trastuzumab_2h_R1 3 RSSLSSHSHQSQIYR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 RS(0.5)S(0.5)LS(0.001)SHSHQSQIYR;RS(0.716)S(0.283)LSSHSHQSQIYR;RS(0.482)S(0.482)LS(0.018)S(0.018)HSHQSQIYR 243.16 2.732e-18 525642000.0 36943.4 78574.3 103410.5 120659.8 93607.6 73591.3 104397.1 50699.8 84342.6 86676.8 True False 36744.500839197615 81189.59807633265 117969.79953982071 135935.31830847202 105527.97300428608 68504.10664628653 99347.01343734948 54483.27652436791 63557.496362937505 81145.01241625808 0.45282513052934786 1.0005494565685178 1.4538145478943139 1.6752147083439999 1.300486251242999 0.8442183272444871 1.2243144769972885 0.671430996213043 0.7832581999852308 1.0 16.308214801698373 1.9895001506794006 1.7606888723733902 0.798840131844383 1.1798672471352902 0.1261722166398862 0.3324194444093856 0.6662381113409022 3.849110872827788 0.2209128367293203 0.10935915445999586 97.61131210946918 -1.9895001506794006 0.38102711529090727 RS(ph)SPAAFINPPIGTVTPALK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSPAAFINPPIGTVTPALK 20 1 F6VRR5;Q9BY77-2;Q9BY77;Q6R954;F8WEE2;Q8WUT1;F8WCX5 F6VRR5 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 1 RS(0.5)S(0.5)PAAFINPPIGTVTPALK;RS(0.5)S(0.5)PAAFINPPIGTVTPALK 198.67 9.387e-22 1911330000.0 858940.0 925890.0 840460.0 825440.0 798410.0 1005530.0 1008620.0 872860.0 1305810.0 1045720.0 True False 854315.5624772061 956707.6889376765 958789.4625907207 929940.6193657309 900082.7809531724 936020.0778630167 959829.1972974301 937997.2454932722 984010.6224575418 978981.2543140666 0.8726577334474 0.9772482207619018 0.9793746901338847 0.9499064617098347 0.9194075749528265 0.9561164462938047 0.9804367479640297 0.9581360637497495 1.0051373487707882 1.0 19.90092170958033 1.5768663951456388 0.867223501071816 1.0030843072383795 0.9442993172735523 0.34945188398403326 0.030312839257779695 0.6860172166272818 1.0220062535558363 0.027365895311300566 0.011079478412036313 37.74560537856628 -1.5768663951456388 -0.05878498996482717 RS(ph)SPPGHYYQK ddPTM_BT-474_Trastuzumab_2h_R1 3 RSSPPGHYYQK 11 1 D6RDK6;D6RBN5;Q9NX40;D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;Q9NX40-3;Q9NX40-2;Q9NX40-4 D6RDK6 OCIAD1 OCIA domain-containing protein 1 1 RS(0.5)S(0.5)PPGHYYQK;RS(0.94)S(0.06)PPGHYYQK;RS(0.5)S(0.5)PPGHYYQK 129.92 0.00014396 1024300000.0 530710.0 663300.0 689620.0 553460.0 703200.0 981210.0 664180.0 554970.0 724030.0 713060.0 True False 527852.7163274239 685377.5395266823 786712.5017155046 623527.9792524684 792748.3518070553 913381.2622198939 632051.0759860065 596384.6794805595 545602.5080049415 667551.9003186205 0.7907291044718492 1.0267030012191618 1.1785038756387467 0.9340516878985146 1.1875456446587582 1.3682550552008612 0.9468193794135414 0.8933907299131453 0.81731848526613 1.0 19.34852048115686 2.018680070925511 24.993394359425036 0.8988193438852807 1.0874684946995838 0.22786804396725768 0.1514386943895053 336.91350266110794 450778.67757142783 0.05839023748445721 0.04311745690592873 104.39508949326864 -2.018680070925511 0.1886491508143031 RS(ph)SPPPPPSGSSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSPPPPPSGSSSR 14 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 RS(0.5)S(0.5)PPPPPSGSSSR 74.732 0.019737 739520000.0 152520.0 185530.0 153510.0 134260.0 158850.0 129520.0 161150.0 138410.0 225140.0 200450.0 True False 151698.8492665651 191705.25389474674 175122.8736671605 151257.30223401217 179078.60592228462 120566.58725728503 153354.55884721753 148738.8570317389 169657.26372143778 187657.10938612086 0.8083831716411634 1.0215720284825258 0.933206710047046 0.8060302257069679 0.9542862858119314 0.6424834510756998 0.8172062297500126 0.7926097631915225 0.9040811950926578 1.0 17.517739422172017 3.7462471554661776 23.435344176851892 0.8290074969821497 0.9311057991394089 0.08231915748502372 0.10516744238295009 442.2493006871647 1348354.5864805062 0.025838040592249624 0.04539634761668911 5575.0293163230035 -3.7462471554661776 0.10209830215725924 RS(ph)SPSARPPDVPGQQPQAAK ddPTM_BT-474_Trastuzumab_2h_R1 6 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 RS(0.499)S(0.499)PS(0.001)ARPPDVPGQQPQAAK;RS(0.5)S(0.5)PS(0.001)ARPPDVPGQQPQAAK;RS(0.838)S(0.153)PS(0.009)ARPPDVPGQQPQAAK;RS(0.459)S(0.459)PS(0.081)ARPPDVPGQQPQAAK;RS(0.333)S(0.333)PS(0.333)ARPPDVPGQQPQAAK;RS(0.333)S(0.333)PS(0.333)ARPPDVPGQQPQAAK 171.29 4.1945e-12 16819852000.0 2800357.0 2630479.0 2689452.0 2498298.0 2508072.0 3079971.0 3054605.0 2891406.0 3592172.0 3352792.0 True False 2785280.1890609106 2718032.9033568664 3068103.4644641494 2814582.2706437353 2827460.102692584 2867059.8542418703 2906842.086425727 3107177.397982172 2706929.343238717 3138813.9440903515 0.8873670879106862 0.8659426623468024 0.9774722296747365 0.8967024872381913 0.9008052573539844 0.9134214086310753 0.9260956967196564 0.9899208597031552 0.8624051605018603 1.0 21.58178808378307 -4.999999893556148 0.07809942642680077 1.2620600720135116 0.8354146175794978 0.2776887800817627 0.04062377278041637 327.09182021994866 1.8158091551826983 15.018251237970976 1.4844593168859732 1.0000002450960568e-05 4.999999893556148 -0.4266454544340138 RS(ph)SPVPPVPER ddPTM_BT-474_Trastuzumab_2h_R1 5 RSSPVPPVPER 11 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RS(0.5)S(0.5)PVPPVPER;RS(0.5)S(0.5)PVPPVPER;RS(0.877)S(0.123)PVPPVPER;RS(0.5)S(0.5)PVPPVPER;RS(0.5)S(0.5)PVPPVPER 102.65 0.0017396 5274600000.0 2821770.0 3144530.0 2917000.0 3161700.0 3151940.0 3109540.0 3149320.0 3146010.0 3620990.0 3400080.0 True False 2806577.903848117 3249193.7801414705 3327688.244981479 3561970.895823598 3553320.875987952 2894584.8188698115 2996975.360029289 3380781.2413150826 2728645.533280131 3183083.983445059 0.8817165737520226 1.0207691022418015 1.045428980915519 1.1190313904217095 1.1163138938427206 0.9093648907550959 0.9415319783003827 1.062108715603556 0.8572332830272709 1.0 21.601993791299986 2.7293532970072087 24.81828758040039 0.9654603569927686 1.040833851281958 0.2044074417626165 0.07969967158127651 1133.7969252004855 3056137.4516923684 0.026701520011930255 0.025499785845343008 536.2327035141382 -2.7293532970072087 0.07537349428918938 RS(ph)SRSS(ph)PELTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RS(0.779)S(0.214)RS(0.101)S(0.867)PELT(0.039)R 121.39 0.010834 217840000.0 147410.0 178400.0 144130.0 173070.0 178730.0 163260.0 171310.0 159690.0 175100.0 173350.0 True False 146616.36093879063 184337.93615492273 164422.2511995821 194980.64425473328 201490.20608429288 151974.22047270183 163023.08083224838 171606.87868938927 131948.95121979114 162286.6545875981 0.9034406514286173 1.135878588558999 1.0131594099182768 1.2014582760992698 1.2415697803144603 0.9364554396595198 1.0045378114825378 1.0574306256141373 0.8130610095765363 1.0 17.30818484122408 2.701192512564936 24.996365238762106 0.9769354305273993 1.102056560090628 0.2858525106474603 0.1068205861070964 826.0572869705684 552567.8265731646 0.03478218689444657 0.03279340256935113 502.56531557950865 -2.701192512564936 0.12512112956322874 RS(ph)SSDTAAYPAGTTAVGTPGNGTPCSQDTSFSSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSDTAAYPAGTTAVGTPGNGTPCSQDTSFSSSR 35 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 RS(0.413)S(0.413)S(0.152)DT(0.021)AAYPAGTTAVGTPGNGTPCSQDTSFSSSR 97.997 0.0001338 181710000.0 7073.0 11199.0 8913.3 9071.8 8159.7 9872.1 8871.5 6200.2 7235.4 7430.7 True False 7034.91975388418 11571.751945061547 10168.215164207548 10220.28894984739 9198.78942866898 9189.664963423744 8442.351652578907 6662.89040797766 5452.332619392781 6956.466364257667 1.0112777645313729 1.6634525834146519 1.4616925651293091 1.4691782314019728 1.3223365063521866 1.3210248540322502 1.2135977104634217 0.9577981203519649 0.7837790530271048 1.0 12.764138939395169 1.9142231277868722 1.569929236403886 0.8756718389121915 1.4050565239125976 0.6167087216356422 0.16249322727504703 0.2307610780471756 1.0612851137742858 0.10741915494264065 0.04848279960043549 82.07731252187098 -1.9142231277868722 0.5293846850004061 RS(ph)SSSGDQSSDSLNSPTLLAL ddPTM_BT-474_Trastuzumab_2h_R1 3 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 1 RS(0.453)S(0.453)S(0.08)S(0.014)GDQSSDSLNSPTLLAL;RS(0.498)S(0.498)S(0.002)S(0.002)GDQSSDSLNSPTLLAL;RS(0.402)S(0.402)S(0.168)S(0.026)GDQS(0.001)S(0.001)DSLNSPTLLAL 226.72 2.4557e-25 728940000.0 608720.0 753000.0 727710.0 727560.0 755780.0 915800.0 885520.0 783700.0 953020.0 922710.0 True False 605442.7191551492 778063.1498018885 830165.2426312899 819669.0214015922 852024.103140979 852492.9015613155 842684.0145850951 842183.6735479654 718160.9908137376 863821.8578282251 0.7008883992323615 0.9007217665897612 0.9610375508654609 0.9488866413526053 0.9863423753632404 0.986885078023619 0.9755298583248707 0.9749506404773534 0.8313762661890725 1.0 19.720374296864378 4.765722115322139 2.185279437338967 0.960946257305537 0.6204384866509519 0.7459308611576143 0.044995983569628965 0.3303048632115171 1.694437717760607 0.010984436876956884 0.22458885366231227 58307.190451453214 -4.765722115322139 -0.34050777065458504 RS(ph)SSSSAAASTPPPGPPAPADPLGYLPLHGGYQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYK 35 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 RS(0.186)S(0.186)S(0.186)S(0.186)S(0.186)AAAS(0.056)T(0.013)PPPGPPAPADPLGYLPLHGGYQYK 61.228 0.0097893 156460000.0 128680.0 140100.0 114080.0 127020.0 112280.0 137550.0 140630.0 113610.0 179900.0 142030.0 True False 127987.20117769203 144763.14380776155 130141.47239886435 143100.71897634602 126578.19246430034 128041.49225787194 133827.1896412299 122088.15509989072 135566.05553649593 132965.52380199943 0.9625592974632982 1.088726909565897 0.9787610252463608 1.0762242338054415 0.9519625000897937 0.9629676069154594 1.0064803703591134 0.9181940672207156 1.0195579399842698 1.0 17.02069269694815 3.2181005358191426 24.999729169112342 0.9702573031573828 1.0275930444012071 0.2201196711947857 0.045212848934094454 293.16720249496746 358213.7505132135 0.012056122854857658 0.014426869716287656 1652.3442588962696 -3.2181005358191426 0.057335741243824345 RS(ph)STAKPEVEHPEPDHSK ddPTM_BT-474_Trastuzumab_2h_R1 3 RSSTAKPEVEHPEPDHSK 18 2 Q9NZI5-3;Q9NZI5;B7Z1S6;F8WFB0 Q9NZI5-3 GRHL1 Grainyhead-like protein 1 homolog 1 RS(0.445)S(0.445)T(0.11)AKPEVEHPEPDHSK;RS(0.447)S(0.447)T(0.106)AKPEVEHPEPDHSK;RS(0.475)S(0.475)T(0.05)AKPEVEHPEPDHSK 227.6 1.3667999999999998e-19 961300000.0 1100350.0 824630.0 850520.0 779080.0 771560.0 1129470.0 1095900.0 817290.0 1498930.0 1019310.0 True False 1094425.8378603773 852077.3110506391 970265.8231476351 877711.4481191285 869813.5926055909 1051392.3973863947 1042887.1302554517 878280.3299145295 1129538.7861329606 954256.763124805 1.146888217251482 0.8929224753518441 1.0167764700670363 0.9197854100032558 0.9115089630146327 1.101791926465902 1.0928789509863341 0.9203815617072669 1.1836843392486713 1.0 19.86401798075796 2.7362243014287637 24.999268315547074 1.046471257512231 0.9718404989145649 0.1534749252715224 0.09345496272526876 436.1491167473799 4666901.849065438 0.02885498734146768 0.028416823232667855 544.7839464638088 -2.7362243014287637 -0.0746307585976661 RS(ph)STAKPEVEHPEPDHSKR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSSTAKPEVEHPEPDHSKR 19 3 Q9NZI5-3;Q9NZI5;B7Z1S6;F8WFB0 Q9NZI5-3 GRHL1 Grainyhead-like protein 1 homolog 1 RS(0.468)S(0.468)T(0.065)AKPEVEHPEPDHSKR;RS(0.493)S(0.493)T(0.014)AKPEVEHPEPDHSKR;RS(0.489)S(0.489)T(0.022)AKPEVEHPEPDHSKR;RS(0.492)S(0.492)T(0.015)AKPEVEHPEPDHSKR 149.18 3.5852e-08 1773960000.0 1039490.0 833467.0 749536.0 700104.0 742547.0 1103610.0 978550.0 631821.0 1606650.0 996620.0 True False 1033893.5013381968 861208.44525356 855064.1537162976 788737.0946167192 837105.9590291133 1027320.0383185019 931213.7980759833 678970.6913420302 1210712.635507009 933014.8583506902 1.1081211537893747 0.9230382962774419 0.9164528796763347 0.8453639162949518 0.8972053891069676 1.1010757536428915 0.9980696338771167 0.7277169117566474 1.2976348925966847 1.0 19.831540530753042 RS(ph)STSGDTEEEEEEEVVPFSSDEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSTSGDTEEEEEEEVVPFSSDEQK 25 1 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;O15231-2;H7BZT5;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 1 RS(0.327)S(0.327)T(0.112)S(0.231)GDT(0.003)EEEEEEEVVPFSSDEQK;RS(0.298)S(0.298)T(0.083)S(0.154)GDT(0.166)EEEEEEEVVPFSSDEQK 146.57 1.5654999999999998e-07 810710000.0 810980.0 608230.0 606320.0 574090.0 494930.0 806770.0 756160.0 695090.0 1020160.0 895630.0 True False 806613.7737883477 628474.5678672002 691684.5857720841 646769.7351372266 557956.4018200588 750999.8888323021 719581.651988285 746961.1453955021 768755.237443645 838470.1266125795 0.9620065738621704 0.7495491466180655 0.8249364691935905 0.7713688473913523 0.665445773332681 0.8956787665964233 0.8582078587526976 0.8908619659632075 0.9168546535455202 1.0 19.67739985816008 1.462550774452903 0.8718408953413371 0.989376210505736 0.799406989641998 0.39644635779382287 0.0753934616592542 0.523274400654676 0.8166261736739289 0.06831600556731408 0.026577982846405796 29.010203444038364 -1.462550774452903 -0.18996922086373802 RS(ph)STSSEPTPTVK ddPTM_BT-474_Trastuzumab_2h_R1 4 RSSTSSEPTPTVK 13 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 RS(0.466)S(0.466)T(0.068)S(0.001)SEPTPTVK;RS(0.499)S(0.499)T(0.002)S(0.001)SEPTPTVK;RS(0.494)S(0.494)T(0.009)S(0.003)SEPTPTVK;RS(0.491)S(0.491)T(0.015)S(0.003)SEPTPTVK 167.28 1.9713e-05 3258060000.0 3797740.0 3448440.0 3138030.0 3039770.0 2976250.0 3790550.0 3646750.0 3308310.0 4625800.0 3997950.0 True False 3777293.3898085803 3563219.240774001 3579837.347754282 3424604.570325359 3355257.79588417 3528518.2004949194 3470342.7705621496 3555192.8914577872 3485833.5725443186 3742797.408182798 1.0092166307346384 0.9520203345721601 0.9564603576799963 0.9149852895692989 0.8964572297043494 0.9427489163000369 0.9272056144356127 0.9498758558732421 0.9313444443782384 1.0 21.835685528831046 6.8287706077028885 0.0007516065605300412 1.3765878401987994 0.5081222329556714 0.0 0.033364751440686784 12022501.34415621 1091.8769590799013 626724.1420469797 634939.8037128561 6741718.392517265 -6.8287706077028885 -0.868465607243128 RS(ph)SVFAAEIMDAFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSVFAAEIMDAFDR 15 1 Q9UMX3 Q9UMX3 BOK Bcl-2-related ovarian killer protein 1 RS(0.5)S(0.5)VFAAEIMDAFDR 85.80799999999998 0.004777399999999999 12933000.0 5887.7 6472.7 7432.5 6940.3 6277.1 10155.0 6682.2 6538.7 9124.0 9297.4 True False 5856.001277384962 6688.139906670222 8478.93139555189 7818.941268395007 7076.451477713397 9453.00875229872 6358.956457517082 7026.650996845826 6875.512455336235 8704.031972095396 0.6727917930631403 0.7683956042569694 0.9741383559636311 0.8983125628975241 0.8130084425700729 1.086049405908032 0.7305759535240122 0.8072869009871342 0.7899227021889068 1.0 13.087468140641281 4.4568158338112465 6.548375133460606 0.8738539926581923 0.6947086993432499 0.3040185343690519 0.10383914323696213 0.17112671071321423 28.688491743195442 0.02529151799114807 0.07508150295969362 28629.63648895687 -4.4568158338112465 -0.17914529331494244 RS(ph)SVKRSDS(ph)GDEQLPT(ph)ICR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSVKRSDSGDEQLPTICR 19 3 Q01668-3 Q01668-3 3 RS(0.48)S(0.48)VKRS(0.48)DS(0.56)GDEQLPT(0.999)ICR 55.33 0.08215599999999999 4437500000.0 1084200.0 1292500.0 1074200.0 1149400.0 1140900.0 1162100.0 1175300.0 1086000.0 1092300.0 1150100.0 True False 1078362.7876659443 1335520.0811672497 1225438.0228862213 1294913.9221493634 1286186.8523559007 1081766.762289151 1118446.2489179967 1167042.8345962598 823117.3010701186 1076699.6333498512 1.0015446780741613 1.2403831484665326 1.1381428811985492 1.202669604447249 1.1945642150488045 1.004706167609192 1.0387727591568527 1.0839075248547552 0.7644818253622119 1.0 20.038184407028925 1.9583706446651554 0.9702100894499227 0.9237066700102522 1.1565124275836527 0.44725445997120294 0.09836728218340907 0.5017884217626466 0.8686880795905781 0.07861543898566345 0.03643100104658882 90.85956320358153 -1.9583706446651554 0.2328057575734005 RS(ph)SVSTIQVEWPEPDLAPAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSVSTIQVEWPEPDLAPAIK 21 1 Q96B33 Q96B33 CLDN23 Claudin-23 1 RS(0.496)S(0.496)VS(0.006)T(0.001)IQVEWPEPDLAPAIK;RS(0.424)S(0.424)VS(0.064)T(0.089)IQVEWPEPDLAPAIK 208.89 1.7636999999999999e-22 194192000.0 229470.0 234220.0 262350.0 225030.0 272420.0 303240.0 256060.0 261030.0 342000.0 277730.0 True False 228234.55901651378 242015.87111102033 299286.59961292107 253518.77492715447 307111.0722401565 282277.7325501781 243673.3995558086 280509.38408348284 257718.68256521187 260005.0336233842 0.8778082325402601 0.9308122528949918 1.151080021190805 0.975053334138042 1.1811735640664756 1.08566256820649 0.9371872388777216 1.0788613596219798 0.9912065123266648 1.0 17.98818002812592 4.412832559134698 7.409570319156201 1.0513575702799938 0.8906711262395349 0.3942590169292953 0.0735096063138784 0.18047359412177438 17.25313018239452 0.017114767672207997 0.04764257888004905 25872.15230180871 -4.412832559134698 -0.16068644404045884 RS(ph)TPAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSTPAPK 7 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 RS(0.5)T(0.5)PAPK;RS(0.5)T(0.5)PAPK 63.283 0.049224 764080000.0 617890.0 534210.0 473350.0 477010.0 529450.0 355800.0 504080.0 573920.0 699160.0 606190.0 True False 614563.3488940328 551990.8569132355 539993.5655680441 537399.4170910631 596872.3192039898 331204.38346311013 479695.7246274001 616748.8247067089 526861.3862640153 567502.4352146302 1.0829263642923472 0.972666939666033 0.9515264288933276 0.946955261765208 1.0517528774625466 0.5836175545887273 0.8452751827328785 1.0867774064677866 0.9283861241313539 1.0 19.11426705761487 5.451822592613537 0.8908502970683285 0.9195238037014828 1.4895253633511556 0.12478691315168489 0.13069831721627276 16.214180385187795 4.0299034189222 0.04418626241928167 12.172730104442552 283023.5620820559 -5.451822592613537 0.5700015596496728 RS(ph)TSPIIGS(ph)PPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSTSPIIGSPPVR 13 1 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 2 RS(0.684)T(0.168)S(0.16)PIIGS(0.988)PPVR 124.43 0.00014163 816980000.0 694540.0 872150.0 775760.0 781380.0 745550.0 851690.0 880160.0 823810.0 914430.0 911010.0 True False 690800.6738106487 901178.9855241916 884980.2649732041 880302.6278833033 840491.3732789377 792814.6749626079 837583.2982622844 885286.8854224177 689080.9792342301 852868.5618450998 0.8099731948334071 1.0566446294779313 1.0376514090971225 1.0321668159263047 0.985487577899008 0.9295860000366633 0.9820778203504803 1.0380109257482582 0.8079568295300616 1.0 19.701963895012778 2.98381667769188 23.095750865634585 0.9628056129685604 0.9950786591246016 0.02102104031947649 0.08586893496588958 1187.123588085366 1694188.5921566018 0.025478978672516306 0.027777801404643275 963.4222625855608 -2.98381667769188 0.03227304615604121 RS(ph)TSPIIGSPPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSTSPIIGSPPVR 13 1 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 1 RS(0.333)T(0.333)S(0.333)PIIGSPPVR 63.145 0.043658 181510000.0 82414.0 123820.0 124590.0 114180.0 101540.0 113470.0 109010.0 97110.0 122760.0 125020.0 True False 81970.2921810561 127941.27384922931 142131.18904430658 128635.17629286094 114470.5171252679 105626.08597964894 103736.76984136035 104356.84131458834 92507.44289972333 117041.11656499292 0.7003546666913247 1.0931310090346202 1.2143697293367939 1.0990597156635107 0.9780367830112286 0.902469910401058 0.8863275820147815 0.8916254763909314 0.7903841454584378 1.0 16.83665591231271 2.8757774780190033 3.022709957541795 0.8862822857095702 1.0443918762595912 0.17646615100674312 0.13247227364464795 0.40577682457082553 7.0872532676261235 0.043374726286064695 0.0468381118506744 751.2378792838994 -2.8757774780190033 0.15810959055002094 RS(ph)YSPDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSYSPDGK 8 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 RS(0.645)Y(0.039)S(0.316)PDGK 58.676 0.06335700000000001 198180000.0 78479.0 115330.0 97879.0 83805.0 111860.0 95440.0 98615.0 82334.0 112380.0 113240.0 True False 78056.47778383666 119168.6893315428 111659.51242048075 94414.70440727966 126104.70795383543 88842.45744159425 93844.61570411643 88478.18116358071 84685.45481484939 106012.92625035837 0.7362920781895952 1.1240958395027791 1.0532631856306607 0.8905961541360669 1.189521999006316 0.8380341962430635 0.8852186145913427 0.8345980466064308 0.7988219720947767 1.0 16.693880659039632 RSAPGGGSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RSAPGGGSK 9 1 P06748;P06748-3;P06748-2;E5RI98 P06748 NPM1 Nucleophosmin 0 ;;; 145.28 0.00015643 582140000.0 549413.0 618115.0 516957.0 486347.0 520801.0 375270.0 608909.0 562663.0 916570.0 697297.0 False True 546455.021453523 638688.5841165924 589740.0521292053 547918.4803337186 587121.9203206286 349328.46819056035 579453.7454117318 604651.770204821 690693.6049087596 652794.9084740041 0.8371006182185688 0.9783908787058601 0.903407861295674 0.839342453841363 0.8993972114352193 0.5351274399599142 0.8876505283509071 0.9262507448446187 1.058056053965477 1.0 19.316270279374972 1.54008877934422 2.7483141655124412 1.0244650070121284 0.8385496844080983 0.314043281430485 0.11140107834984815 0.3086081909396769 5.055659145424267 0.08483599167821043 0.031085618046053313 34.680773833636536 -1.54008877934422 -0.1859153226040301 RSAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_BT-474_Trastuzumab_2h_R1 4 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 RS(0.003)AS(0.997)PDDDLGSSNWEAADLGNEER;RS(0.204)AS(0.796)PDDDLGSSNWEAADLGNEER;RS(0.011)AS(0.989)PDDDLGSSNWEAADLGNEER;RS(0.004)AS(0.996)PDDDLGSSNWEAADLGNEER 399.31 2.649899999999999e-138 10026700000.0 1516470.0 1756710.0 1606840.0 1649470.0 1585860.0 1727830.0 1941740.0 1664860.0 1980640.0 1957460.0 True False 1508305.4940156573 1815181.0303963793 1833069.105096346 1858292.7328760305 1787809.8708713546 1608389.178974326 1847810.6180328676 1789100.3071877814 1492537.8112162603 1832533.2269341813 0.8230712937953353 0.9905310330624497 1.0002924247998828 1.0140567742855853 0.9755947911855063 0.8776862298235939 1.0083367607605376 0.976298972860065 0.8144669844340385 1.0 20.80540792642737 RSAS(ph)PHDVDLCLVSPCEFEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 RS(0.146)AS(0.854)PHDVDLCLVSPCEFEHR;RS(0.191)AS(0.809)PHDVDLCLVSPCEFEHR;RS(0.218)AS(0.782)PHDVDLCLVSPCEFEHR;RS(0.211)AS(0.789)PHDVDLCLVSPCEFEHR 191.44 6.776e-18 2012250000.0 233702.0 345453.0 293564.0 334125.0 326400.0 311682.0 309492.0 259884.0 436407.0 343028.0 True False 232443.77439873328 356951.19427425135 334895.2594959699 376425.19074139156 367965.1052756295 290136.15696050884 294520.689585747 279277.8637442128 328860.3424041999 321135.65935895365 0.7238180115616377 1.1115277418483893 1.042846690288095 1.1721687697118597 1.145824496756779 0.9034691368117588 0.9171223469036884 0.869656967717952 1.0240542674727127 1.0 18.292823347298448 2.7155507036567084 24.76330774523747 0.9273741073653571 1.0508389161278568 0.12240586682031818 0.12371833845424071 1194.5337925210024 1285557.5011977619 0.03981414931706598 0.03755969825125467 519.4583164573784 -2.7155507036567084 0.12346480876249977 RSCFESS(ph)PDPELK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSCFESSPDPELK 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RS(0.134)CFES(0.367)S(0.499)PDPELK 91.317 0.0040347 258260000.0 436460.0 394060.0 355690.0 369150.0 377360.0 448250.0 494260.0 445420.0 636120.0 460590.0 True False 434110.1478552651 407176.04888569994 405768.06028709747 415884.35215019755 425414.5592120451 417263.53256700095 470350.7555434428 478659.5021969305 479356.7495712932 431194.7518690618 1.0067612047075394 0.9442973206903607 0.9410320012668302 0.9644930749910577 0.9865949373642379 0.9676915842744505 1.0908081638393208 1.110077291344868 1.1116943040087288 1.0 18.71798009339329 2.239406493356094 15.40478475492476 1.0898846355343816 0.9667714898942183 0.6999537510664882 0.03482714159815419 0.09214038789597258 1603.5301386087176 0.011959673510757792 0.00944464550375507 173.54275729318618 -2.239406493356094 -0.12311314564016329 RSDAEEVDFAGWLCSTIGLNQPS(ph)TPTHAAGV ddPTM_BT-474_Trastuzumab_2h_R1 4 RSDAEEVDFAGWLCSTIGLNQPSTPTHAAGV 31 1 Q02750;Q02750-2;H3BRW9 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 RSDAEEVDFAGWLCSTIGLNQPS(0.469)T(0.469)PT(0.062)HAAGV;RSDAEEVDFAGWLCSTIGLNQPS(0.458)T(0.458)PT(0.084)HAAGV;RSDAEEVDFAGWLCSTIGLNQPS(0.466)T(0.466)PT(0.068)HAAGV;RSDAEEVDFAGWLCSTIGLNQPS(0.465)T(0.465)PT(0.069)HAAGV 161.99 1.1336e-12 261726000.0 114906.5 125993.6 113403.2 116793.9 108101.7 118618.4 116363.7 88678.2 122808.6 111105.2 True False 114287.85617131238 130187.22081126053 129369.38484171547 131579.99576485157 121867.81072602492 110418.58920567902 110734.74327849822 95295.81758277549 92544.06608093002 104014.37101405274 1.098769862828586 1.2516272467164344 1.2437645258099688 1.265017463279902 1.17164397128893 1.0615705130857451 1.06461003608374 0.9161793380445541 0.8897238446832213 1.0 16.66642334471055 2.3551332875184667 1.2621892963683228 0.9295640453587842 1.2194515306187441 0.8036624207575583 0.057196289784886556 0.18030004810427624 0.5701422949497557 0.03355908320009584 0.021550050499338204 226.5339446851955 -2.3551332875184667 0.2898874852599599 RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV ddPTM_BT-474_Trastuzumab_2h_R1 4 RSDAEEVDFAGWLCSTIGLNQPSTPTHAAGV 31 1 Q02750;Q02750-2;H3BRW9 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 RSDAEEVDFAGWLCSTIGLNQPS(0.031)T(0.965)PT(0.004)HAAGV;RSDAEEVDFAGWLCSTIGLNQPS(0.139)T(0.835)PT(0.026)HAAGV;RSDAEEVDFAGWLCSTIGLNQPS(0.121)T(0.876)PT(0.003)HAAGV;RSDAEEVDFAGWLCSTIGLNQPS(0.153)T(0.733)PT(0.114)HAAGV 176.86 2.4337e-18 313034000.0 134963.6 146385.0 139005.0 158768.0 149295.0 139546.0 139820.0 128314.0 140865.0 133643.0 True False 134236.97097346565 151257.33623339873 158575.6957468806 178868.01252115014 168306.83330920676 129899.51347595027 133056.3724357305 137889.44224528986 106150.70824429406 125113.78932247139 1.0729190739118286 1.208958157629966 1.2674517861349692 1.4296426755977416 1.3452300839151194 1.038250972809592 1.0634828755189223 1.1021122690952168 0.8484333247288881 1.0 16.93288127825563 2.7246940990388357 22.673442565339563 1.028185664163664 1.271036540976992 0.5846141983472269 0.1066280380871137 184.14511928482568 301098.30572167895 0.03659957917134228 0.03472000738754685 530.5106405370535 -2.7246940990388357 0.24285087681332795 RSDLDLGYEPEGSAS(ph)PTPPYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSDLDLGYEPEGSASPTPPYLK 22 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 RSDLDLGYEPEGS(0.001)AS(0.595)PT(0.404)PPYLK;RSDLDLGYEPEGS(0.002)AS(0.499)PT(0.499)PPYLK 162.91 9.6116e-12 420590000.0 274196.0 289644.0 285102.0 312023.0 302707.0 343661.0 353192.0 349845.0 453230.0 376290.0 True False 272719.75920203957 299284.62544650445 325241.88344899216 351525.07980756107 341254.94216504256 319904.52396097756 336106.75363553537 375952.21037691395 341537.53947085066 352274.8500419227 0.7741675545943298 0.8495770430698867 0.9232617185424578 0.9978716328052587 0.968717869369418 0.9081105958115009 0.9541037448331516 1.0672127468996822 0.9695200762421892 1.0 18.426341954620334 5.99490743737302 0.5292043441827625 0.9974832568615375 2.525129313612982e-13 0.7519657830334892 0.039210317089884913 7.278561344653688 0.5575152027472058 0.02205712911524148 6.005708737562752 988342.4235002032 -5.99490743737302 -0.997483256861285 RSDS(ph)LLSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 RSDS(1)LLSFR 156.73 4.3021e-05 123560000.0 47804.0 22521.0 26457.0 32830.0 22660.0 27620.0 22263.0 23169.0 41235.0 30995.0 True False 47546.62857552372 23270.597870768004 30181.915631633543 36986.27463386427 25545.616683657376 25710.69441048651 21186.05363708103 24897.988429798123 31073.18677069153 29016.87256384544 1.6385855667562899 0.8019678144006048 1.0401505388020253 1.2746471747595767 0.8803711229544016 0.8860601484159125 0.7301287756103155 0.8580520996883936 1.0708661556245114 1.0 14.824604413779392 3.22120484672533 24.632727000653887 0.8819462063238241 1.1505836670749772 0.28718593156968875 0.21460019668179547 265.16571031440174 376343.9016004155 0.06001847213440603 0.07190296790997452 1664.1974289520886 -3.22120484672533 0.268637460751153 RSDS(ph)PEIPFQAAAGPSDGLDAS(ph)SPGNSFVGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 RS(0.084)DS(0.916)PEIPFQAAAGPSDGLDAS(0.677)S(0.321)PGNS(0.002)FVGLR 131.18 2.7776e-07 44877000.0 27698.0 39139.0 36268.0 39093.0 33913.0 39404.0 39761.0 38232.0 41961.0 37274.0 True False 27548.877045537083 40441.717954974854 41374.219152892816 44042.1697917044 38231.61953190081 36680.094227038746 37837.60852822975 41085.06597816232 31620.273798593124 34895.14140812309 0.7894760110966078 1.1589498228988577 1.18567277515779 1.2621289960284274 1.0956144032991664 1.0511519010064863 1.0843231178143813 1.1773864303240307 0.9061511867446502 1.0 15.0907385576932 1.234321192237837 24.999862855923023 0.9530755522991413 1.1112560205781536 0.1869271703090224 0.12144018995352625 172.3665393076449 1016378.0219105006 0.10086550290289606 0.02873401212056523 17.152253719836487 -1.234321192237837 0.15818046827901233 RSDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 RS(0.077)DS(0.923)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.133)DS(0.867)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.012)DS(0.988)PEIPFQAAAGPSDGLDASSPGNSFVGLR 220.36 4.0389999999999985e-36 1556170000.0 326948.0 475134.0 420785.0 479237.0 408938.0 460049.0 537354.0 409504.0 575568.0 484117.0 True False 325187.74829533766 490948.5479654317 480027.870471214 539908.3550627228 461013.8303345753 428246.89546885964 511360.1341283763 440063.26789917756 433726.97861606366 453220.238586584 0.7175049139673696 1.083244979298602 1.0591492382781327 1.1912715035552803 1.0171960364618677 0.9448979966216725 1.128281772506691 0.9709700283278658 0.9569894318238917 1.0 18.789852760697993 4.743155078265421 24.941091535680357 1.0408342807630895 0.7175047795373904 0.6253486536433748 0.07466825385772191 303.4924122053835 1647453.0672391765 0.018065057842881444 0.14502439816859475 55354.77352541128 -4.743155078265421 -0.32332950122569903 RSDS(ph)PENK ddPTM_BT-474_Trastuzumab_2h_R1 3 RSDSPENK 8 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;E9PMZ7;C9JMU2 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 RSDS(1)PENK;RSDS(1)PENK;RS(0.005)DS(0.995)PENK 132.55 0.00058631 789724000.0 1134770.0 852830.0 794280.0 733830.0 755590.0 766310.0 970100.0 901160.0 1365650.0 1108150.0 True False 1128660.524404798 881215.9310033773 906107.7199944777 826732.8027587155 851809.9077671958 713336.793399708 923172.5568581191 968409.1351977583 1029103.8562724607 1037426.9182650548 1.0879422005863488 0.849424586434563 0.8734183623361255 0.7969070285368202 0.8210794348692279 0.6876019706454694 0.8898675565523116 0.933472149360922 0.9919772064460085 1.0 19.984578278438985 1.6171363399503202 2.4950870280406616 0.9907082019554189 0.8470099828205321 0.2588741300128702 0.09421597623555988 0.34011682397485843 4.793134917195839 0.06768607113414254 0.026332019001702813 41.412966393619655 -1.6171363399503202 -0.14369821913488678 RSDS(ph)PENKYSDSTGHSK ddPTM_BT-474_Trastuzumab_2h_R1 4 RSDSPENKYSDSTGHSK 17 2 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;E9PMZ7;C9JMU2 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 RS(0.006)DS(0.831)PENKYS(0.16)DS(0.003)TGHSK;RSDS(0.331)PENKYS(0.132)DS(0.207)T(0.329)GHSK;RSDS(1)PENKYSDSTGHSK;RSDS(0.999)PENKYS(0.001)DSTGHSK 248.39 3.816800000000001e-21 856470000.0 365219.0 476085.0 433504.0 512146.0 475158.0 528830.0 662570.0 489399.0 974750.0 662700.0 True False 363252.7014836453 491931.20142554044 494537.5951156847 576983.6310884871 535666.5548178852 492273.2268319178 630518.957836804 525920.4384977674 734535.9234808194 620405.9186339858 0.5855081174651875 0.7929182921218387 0.7971194024140857 0.9300098754036612 0.8634130312575348 0.7934695850674806 1.0163006813750022 0.8477037737740202 1.1839602128524593 1.0 19.24285292409768 5.949680070921613 0.2807936197337979 1.018554092255421 5.862915453437272e-16 0.6053404156664066 0.0968850799278251 12.12533175714 0.46234861940297484 0.10851373523378943 4.806528078265378 890594.6274878463 -5.949680070921613 -1.0185540922554204 RSDS(ph)QQAVK ddPTM_BT-474_Trastuzumab_2h_R1 6 RSDSQQAVK 9 1 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 RS(0.011)DS(0.989)QQAVK;RSDS(1)QQAVK;RSDS(1)QQAVK;RSDS(1)QQAVK;RS(0.003)DS(0.997)QQAVK;RS(0.002)DS(0.998)QQAVK 145.31 5.9703e-05 1844920000.0 2120190.0 1526804.0 1241636.0 1667687.0 1247787.0 1026531.0 1367788.0 1462154.0 2178135.0 1830552.0 True False 2108775.1326152547 1577622.7481674915 1416447.5563064201 1878816.0032082004 1406685.2782370155 955569.3281640526 1301622.8689824278 1571267.35614757 1641362.814763678 1713724.6041455842 1.2305215946097896 0.9205812557928762 0.8265316100848198 1.0963348478881916 0.8208350833232916 0.5575979511833368 0.759528611443016 0.9168727299278991 0.9577751353940654 1.0 20.708703856046576 7.709699923110169 1.0030924704555664 0.8475565625268221 199.99999876698078 0.3698596803441667 0.13970324511483956 951.7388418398452 2.4721462029760244 0.04401893068133184 434043.8858697193 51250714.34941469 -7.709699923110169 199.15244220445396 RSDSAS(ph)SEPVGIYQGFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSDSASSEPVGIYQGFEK 18 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 RS(0.012)DS(0.285)AS(0.612)S(0.091)EPVGIYQGFEK;RS(0.002)DS(0.199)AS(0.652)S(0.147)EPVGIYQGFEK 228.48 1.4712999999999999e-19 438040000.0 401300.0 422130.0 376040.0 378560.0 412760.0 470430.0 422980.0 454730.0 600450.0 455730.0 True False 399139.4453886214 436180.3418670261 428983.16340172687 426485.65718536923 465322.53937980655 437910.28137310524 402518.8414594855 488664.2616721523 452477.143117782 426644.9212299176 0.9355307552659848 1.0223497811942073 1.0054805344103679 0.9996267058703306 1.0906552878641809 1.026404533565552 0.9434516185007377 1.1453652378269203 1.060547355898193 1.0 18.70267634875039 7.042364620735129 0.4734614389158274 1.0525535201978922 1.4314237648821405e-10 0.2270701261414968 0.052993504458711344 53.80810260871649 1.5253845809108575 0.030703898102169183 49.60153703329247 11024645.175303902 -7.042364620735129 -1.0525535200547498 RSECNMCNTPK ddPTM_BT-474_Trastuzumab_2h_R1 6 RSECNMCNTPK 11 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 ;;;;; 178.95 1.1730999999999997e-05 1117475000.0 1067881.0 1031578.0 975271.0 958291.0 978453.0 1103573.0 1128301.0 1042235.0 1494411.0 1176272.0 False True 1062131.647348733 1065913.4501279308 1112580.6795925042 1079610.5423442093 1103053.1898047035 1027285.5960414126 1073720.7701016117 1120011.8680620943 1126133.4331314634 1101201.3139028742 0.9645208682001379 0.9679551201679225 1.010333592546579 0.9803934382514101 1.0016816869708098 0.9328771979035424 0.9750449409619154 1.0170818486336088 1.022640836796884 1.0 20.07064680572883 1.7328290549115535 6.285786430427668 1.0146590172306305 0.9765717659540424 0.4061554841717189 0.020515425186414124 0.14171913623606106 15.02849241812158 0.010507492516233789 0.005463187322398565 54.054151548652555 -1.7328290549115535 -0.038087251276588074 RSEEEEEEDEDVDLAQALLDS(ph)EEENDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSEEEEEEDEDVDLAQALLDSEEENDR 27 1 H0YN21;H0YLH4;H0YMN6;H0YM86;H0YN92;Q8TEB1-2 H0YN21 DCAF11 1 RSEEEEEEDEDVDLAQALLDS(1)EEENDR 120.34 8.2414e-05 312550000.0 81496.0 88703.0 104260.0 85463.0 96000.0 95671.0 97573.0 93453.0 124680.0 102480.0 True False 81057.23459105681 91655.42573290426 118938.9017558344 96282.60703728115 108225.03096342043 89057.48895530979 92853.02122494298 100426.93740471864 93954.2846264053 95939.63866245793 0.8448774221074408 0.9553447043445024 1.2397263885295025 1.0035748349650333 1.1280533517974347 0.92826583669591 0.9678275061221094 1.0467721038438373 0.9793062172869166 1.0 16.549839385475533 1.21514128850992 24.196549417145846 0.9896530984286811 1.0193809806225615 0.0071045858399524375 0.10348327334061168 1318.342450354702 1362041.5918294427 0.09822329389875352 0.024622029399877916 16.411235911577055 -1.21514128850992 0.02972788219388045 RSEEVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSEEVVR 7 1 O14907;A0A087X282 O14907 TAX1BP3 Tax1-binding protein 3 0 73.208 0.079398 208640000.0 79771.0 98440.0 109870.0 83764.0 99664.0 95984.0 84125.0 76933.0 97442.0 97607.0 False True 79341.52179939134 101716.51589176325 125338.74099284036 94368.51381148367 112355.6196451911 89348.85200203245 80055.55236129186 82674.13111785837 73428.72475590456 91377.63769444302 0.8682816036971851 1.1131445117009078 1.3716566126600866 1.0327309415356285 1.2295745707598196 0.9777977879096129 0.8760956660861491 0.9047523355146448 0.8035743384113552 1.0 16.47955352585413 2.523304145250462 4.59839992752239 0.8921693720655481 1.1308281471268264 0.4091149978640799 0.12917699644908454 0.20047204771531782 9.38421771052325 0.04338876444713382 0.039467698344147505 333.659999838598 -2.523304145250462 0.2386587750612783 RSELIAK ddPTM_BT-474_Trastuzumab_2h_R1 6 RSELIAK 7 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 ;;;;; 118.74 0.0079175 10798280000.0 12091010.0 12822630.0 11218000.0 11109320.0 10420490.0 12477860.0 12667780.0 11795950.0 15986700.0 12815810.0 False True 12025913.345597494 13249423.488106476 12797396.891396025 12515758.772935754 11747477.634416798 11615294.90792301 12054991.085780984 12676223.687620398 12046991.995804872 11997894.033633037 1.0023353525115253 1.1043124277448273 1.066636932741845 1.0431629699221392 0.9791283038077966 0.9681111431191584 1.004758922856619 1.0565373933196807 1.0040922150199194 1.0 23.516277858889598 3.4313354885126417 6.242184597708558 1.0070944889489064 1.0613218164475724 0.3882769761882171 0.03189592247277122 0.21124005501317525 19.826722566741385 0.009525721361385011 0.013059621686362738 2699.824216601655 -3.4313354885126417 0.05422732749866599 RSES(ph)PPAELPSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSESPPAELPSLR 13 1 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3;H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 RS(0.021)ES(0.979)PPAELPSLR;RS(0.018)ES(0.982)PPAELPSLR 142.94 2.4856e-05 581170000.0 369690.0 626190.0 597080.0 705430.0 597040.0 564720.0 542760.0 449540.0 512310.0 581960.0 True False 367699.6301164201 647032.3556101511 681143.674087604 794737.3656706336 673069.5050666718 525682.23560789 516504.6252554507 483086.95751786715 386058.0651022911 544818.8145589775 0.674902592000365 1.1876101528063305 1.2502205428404294 1.4587186500047018 1.2354006269249553 0.9648753338913629 0.9480300816585295 0.8866928685436802 0.7085989961906863 1.0 19.05541700011103 2.566625288227722 3.3275760967247687 0.8839342968221049 1.1833343554565479 0.30293547419123334 0.19776730458320219 0.3096160437277587 6.543475770312324 0.07132821315480979 0.06505024266352423 368.65937987999473 -2.566625288227722 0.29940005863444297 RSET(ph)PPHWR ddPTM_BT-474_Trastuzumab_2h_R1 5 RSETPPHWR 9 1 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 RS(0.066)ET(0.934)PPHWR;RS(0.071)ET(0.929)PPHWR;RS(0.004)ET(0.996)PPHWR;RS(0.1)ET(0.9)PPHWR;RS(0.003)ET(0.997)PPHWR 92.99 0.0056854 6384690000.0 1760030.0 2207580.0 2059220.0 2153560.0 2253960.0 2065720.0 2122800.0 1856470.0 2230790.0 2304010.0 True False 1750554.1940377164 2281057.9657897074 2349140.276938897 2426200.47519052 2540988.4457324105 1922921.6385818315 2020112.054116498 1995009.2183636453 1681041.695554529 2156966.1092378004 0.8115816871393977 1.0575307400614453 1.0890946625809548 1.1248208605594912 1.178038187456877 0.8914936726851622 0.9365525241517763 0.9249144944000139 0.7793547095408713 1.0 21.04057207803456 2.708911635646837 24.675867627399867 0.9063367095199293 1.05859138291944 0.33090148208857506 0.10342869247080937 698.1915889610791 581080.9762045793 0.033858860036033264 0.0319268256630054 511.5777360483535 -2.708911635646837 0.1522546733995107 RSFS(ph)KEVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 RSFSKEVEER 10 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 RS(0.49)FS(0.51)KEVEER 132.97 0.00010939 248300000.0 183450.0 144310.0 155330.0 153610.0 170600.0 228480.0 196710.0 187540.0 387120.0 255510.0 True False 182462.3255832112 149113.27111276297 177199.11384743673 173057.01025001172 192324.89877457832 212685.71538406773 187194.385794826 201535.18710882397 291719.4631422363 239203.13304688345 0.7627923734069523 0.6233750754574648 0.7407892680599044 0.7234730082573493 0.8040233266379623 0.8891426825182163 0.7825749747104532 0.8425273722034543 1.2195469993491252 1.0 17.86787676030059 1.3883569279424606 4.363189776757459 1.1058493349149625 0.7637598855903982 0.740385540574424 0.08103897062762806 0.10766559255400047 3.2180237210273925 0.06129577040321739 0.02139336113045473 24.45439528531267 -1.3883569279424606 -0.3420894493245643 RSGS(ph)FGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSGSFGK 7 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 RS(0.345)GS(0.655)FGK;RS(0.106)GS(0.894)FGK 56.548 0.074081 654090000.0 1171960.0 918310.0 883440.0 899610.0 836140.0 771690.0 930490.0 838890.0 1323340.0 1129000.0 True False 1165650.2975769958 948875.3932198833 1007820.6730018655 1013500.5337609082 942617.4728099409 718344.8866628658 885478.643883013 901492.2315971055 997220.5888475064 1056946.2534144705 1.1028472770600741 0.8977517921602317 0.9535212124042216 0.9588950530708532 0.8918310365969984 0.6796418307385534 0.837770739072559 0.8529215451446372 0.9434922406186502 1.0 20.01147058568161 7.999999963897345 0.6590889375062118 0.8610579122475983 22.34466940510854 0.34352703117071537 0.08600729558682566 250.21889446204534 1.5508886982151668 0.03402157033394041 7859.81355182581 99999991.68705681 -7.999999963897345 21.48361149286094 RSGS(ph)PLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSGSPLEK 8 1 B1AKL4;Q9NRA8;Q9NRA8-3;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 RS(0.17)GS(0.83)PLEK;RS(0.156)GS(0.844)PLEK 77.062 0.020939 577220000.0 520020.0 398250.0 366110.0 353460.0 377290.0 439870.0 477070.0 442530.0 708510.0 525300.0 True False 517220.2700996535 411505.51050279144 417655.10571483383 398207.9997589301 425335.64512696787 409462.82224260306 453992.30151561985 475553.8357218081 533907.2040475968 491774.9042680432 1.051741895755098 0.8367761488668793 0.8492810472638308 0.8097363169672559 0.8648990451435025 0.832622443091208 0.9231709417773994 0.9670152575793218 1.085673952480888 1.0 18.90763858917596 1.6567032586125674 2.112078702912567 1.0402904371414599 0.8693088746436056 0.48399111523132565 0.06743844703410483 0.2268607769450464 2.1760362065601395 0.04770202269904866 0.018520691890006064 45.36315568596137 -1.6567032586125674 -0.17098156249785423 RSHS(ph)PSIDGTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSHSPSIDGTPK 12 1 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 RS(0.411)HS(0.576)PS(0.013)IDGTPK 67.902 0.025471 0.0 192110.0 184960.0 183450.0 186960.0 178330.0 181830.0 186750.0 171690.0 245990.0 188350.0 True False 191075.70110542767 191116.28178931875 209278.1654240154 210629.1168305592 201039.268455279 169260.52008177998 177716.18904572082 184502.37962415494 185369.06059712416 176329.34174545217 1.0836296399340233 1.0838597813471844 1.186859562636648 1.194521086199153 1.140135081689909 0.9599112570052198 1.0078650965661218 1.0463509804879854 1.0512661067193325 1.0 17.42791303796864 2.757358823373874 24.035442838496156 1.017991971558146 1.1406809032326375 0.6921336851933482 0.0415042844353825 316.1974840468996 404290.26766234526 0.013959387586903819 0.014778148208920271 571.9509996348373 -2.757358823373874 0.12268893167449146 RSIS(ph)QQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSISQQK 7 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 RS(0.097)IS(0.903)QQK;RS(0.005)IS(0.995)QQK 76.30199999999998 0.043565 240070000.0 146931.0 181070.0 149783.0 185145.0 175281.0 125841.0 163459.0 130071.0 182319.0 162911.0 True False 146139.93982156884 187096.80549087338 170871.14446282506 208584.33801665547 197601.99637811774 117141.90786785066 155551.8636959812 139777.5585071551 137388.92539943522 152513.88050487582 0.9582074715940153 1.2267526396385406 1.1203645458182565 1.3676416685888935 1.2956328678018292 0.7680737483045399 1.0199193881963307 0.9164907354297267 0.9008289930374104 1.0 17.218581024812366 2.7464380911851936 24.99841219780082 0.9242802489912791 1.2011420275549964 0.5651715831798747 0.11947394162375592 439.72274249740803 1395418.3940265328 0.036579988232773704 0.03817494708254156 557.7480893087271 -2.7464380911851936 0.2768617785637173 RSIS(ph)SPNVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSISSPNVNR 10 1 Q9NQT8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 RS(0.38)IS(0.551)S(0.069)PNVNR 78.809 0.030602 195120000.0 171110.0 144180.0 115810.0 152310.0 129720.0 133260.0 145080.0 146230.0 179400.0 168390.0 True False 170188.76277210817 148978.94414134964 132115.04136143465 171592.43038330376 146239.07308932176 124048.04986029801 138061.92614057916 157142.42514089437 135189.27383683895 157643.20603406802 1.079581969015074 0.9450387865694259 0.8380636545344268 1.0884860483376695 0.9276585827474116 0.7868911891673288 0.875787353060701 0.9968233271463318 0.8575648595196892 1.0 17.266303469816982 4.718148624360286 4.363914253647775 0.9224594514985025 1.0883393907605587 0.23754633888112664 0.08433741266531104 0.2738694261504993 12.2533617270067 0.020262632880635695 0.1346951930981551 52257.4994140064 -4.718148624360286 0.16587993926205624 RSISS(ph)PNVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSISSPNVNR 10 1 Q9NQT8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 RSIS(0.254)S(0.746)PNVNR 157.22 5.8482e-06 428700000.0 109650.0 76636.0 71578.0 72538.0 73276.0 81373.0 54654.0 70368.0 103400.0 90447.0 True False 109059.65658326013 79186.78293255981 81655.56023287098 81721.30336251127 82607.2642591208 75747.87604143807 52010.177221444865 75619.21748146386 77918.45548901428 84674.59502442743 1.287985570545663 0.9351893907460147 0.9643454475254886 0.9651218684770305 0.9755849937668998 0.8945761833237688 0.614235913457167 0.893056736316823 0.9202105479989116 1.0 16.36964156126714 7.999999999624426 0.7323197624281098 0.8685685707924996 62.43867391940707 0.5351445451122003 0.10512487913922924 268.2578706602937 1.2369818539320265 0.03869027467732311 27183.890494739007 99999999.91352084 -7.999999999624426 61.570105348614575 RSLSGS(ph)SPCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSLSGSSPCPK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RS(0.096)LS(0.096)GS(0.55)S(0.258)PCPK 62.89100000000001 0.047839 128210000.0 231470.0 258310.0 208430.0 172180.0 211280.0 266220.0 265090.0 296640.0 406980.0 301280.0 True False 230223.7912387348 266907.6921983075 237775.13229396316 193977.97034598675 238185.25564532785 247816.83801447222 252266.5839578589 318776.78310739883 306685.2322526019 282052.0524612149 0.8162457575819023 0.9463065057291512 0.8430186209216107 0.6877381981563873 0.8444726906501799 0.878620934866445 0.8943972637552361 1.1302055075498307 1.0873355807073033 1.0 18.105601909748113 1.8826936268295111 3.7469491008035716 1.0823981025448088 0.8375360709529766 0.7060924142027498 0.06803163959642274 0.12966116702393746 3.0046570022519172 0.03541246809461771 0.019606646250148657 76.32971254192525 -1.8826936268295111 -0.24486203159183229 RSNS(ph)PDKFK ddPTM_BT-474_Trastuzumab_2h_R1 3 RSNSPDKFK 9 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 RS(0.358)NS(0.642)PDKFK;RS(0.342)NS(0.658)PDKFK;RSNS(1)PDKFK 135.6 0.00011286 13634100000.0 10458400.0 7395900.0 6685200.0 5868500.0 6035500.0 8661300.0 9429000.0 8643700.0 14901900.0 8612800.0 True False 10402093.13643748 7642068.0605840385 7626418.051199925 6611451.498289136 6804085.149788788 8062564.717507125 8972883.247722087 9288736.785819236 11229526.4202296 8063123.730210932 1.290082291241903 0.9477800808079776 0.9458391445272312 0.8199615582627529 0.8438522559557439 0.9999306704544652 1.112829661053379 1.1520022632191758 1.3927017364442498 1.0 22.942907430040677 2.0860206428675405 2.175906319097182 1.1969757340320666 0.9566237016206819 0.28531415249073633 0.14912309140562446 0.3757460415045848 3.4363775350177304 0.07812623618281954 0.0452154333608411 121.90475412656416 -2.0860206428675405 -0.2403520324113847 RSNVSSPATPTAS(ph)SSSSTTPTRK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSNVSSPATPTASSSSSTTPTRK 23 2 Q12888;Q12888-2;A6NNK5;Q12888-3;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 RSNVSSPATPT(0.026)AS(0.139)S(0.139)S(0.139)S(0.139)S(0.139)T(0.139)T(0.139)PT(0.001)RK 68.689 0.013232 54593000.0 46554.0 37466.0 36324.0 40611.0 33144.0 52966.0 58006.0 42231.0 66496.0 57951.0 True False 46303.35843663567 38713.03316132472 41438.103466132095 45752.348436060376 37364.69194012093 49304.585088552805 55200.02817556136 45382.49166467282 50108.951800749455 54252.517565652786 0.8534785207083234 0.7135711833921216 0.7638005630980436 0.8433221256634575 0.6887181206826885 0.9087981037725609 1.0174648228768732 0.8365048056941128 0.9236244518995996 1.0 15.727402466327 2.620743754950473 6.807934768051578 0.9282479853829366 0.7731146007816587 0.6072543394004777 0.06616691870464407 0.17978354157090062 9.422305239765542 0.02091268566834446 0.01967626300634474 417.58390856916725 -2.620743754950473 -0.1551333846012779 RSPES(ph)CSKPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSPESCSKPEK 11 2 Q03111 Q03111 MLLT1 Protein ENL 1 RS(0.011)PES(0.987)CS(0.002)KPEK;RS(0.109)PES(0.89)CSKPEK 169.4 1.334e-05 4977500000.0 1989720.0 1497460.0 1422040.0 1355540.0 1360320.0 1920320.0 1891220.0 1839610.0 2724800.0 1750330.0 True False 1979007.5685986755 1547302.0508663147 1622250.8714067424 1527151.225013352 1533548.688751666 1787572.7983470466 1799734.4634380084 1976891.0395503016 2053309.5504493834 1638622.4408670955 1.2077263921464798 0.9442700235739128 0.9900089434563767 0.9319726051141121 0.935876777044608 1.0908997422256297 1.0983216258686526 1.2064347406985392 1.2530705666174398 1.0 20.64405204704585 2.319986043322564 2.1757695040178278 1.1682990580929902 0.9958088076561735 0.29127414005587515 0.09828942779232412 0.32177171639649 3.1221030467539426 0.04181244674832111 0.030348750728610353 208.9228989398544 -2.319986043322564 -0.17249025043681665 RSPPIPLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSPPIPLAK 9 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 83.86200000000002 0.025466 1636990000.0 1127070.0 1485970.0 1319450.0 1192710.0 1238680.0 1458910.0 1397770.0 1318410.0 1911840.0 1440100.0 False True 1121001.980349248 1535429.6131621664 1505217.0911350083 1343706.9637086883 1396418.555768432 1358058.9856047367 1330154.525100066 1416796.4489503296 1440692.6493434906 1348191.5850683593 0.8314856677379486 1.1388808758098823 1.1164712106244805 0.9966736023208129 1.0357716004418078 1.0073189898569772 0.9866212931692653 1.0508865836590218 1.0686112161651278 1.0 20.36259409491534 4.755741129295595 24.64943535345196 1.0431497014731717 0.8314854604317845 0.6318243639021897 0.04878966771714566 1982.407715146668 2844168.227064086 0.012143864147068285 0.3484834777032046 56982.45146924558 -4.755741129295595 -0.21166424104138715 RSPQQTVPYVVPLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPQQTVPYVVPLSPK 16 1 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 RSPQQTVPYVVPLS(1)PK 82.477 0.0028072 0.0 168950.0 141740.0 122860.0 130950.0 145680.0 193930.0 190640.0 165750.0 290420.0 190120.0 True False 168040.39197210953 146457.73021636048 140157.62008173624 147528.25657339397 164231.48448699038 180524.07556211596 181418.01488447757 178119.1066614457 218849.88242862205 177986.3788300791 0.9441193931617382 0.8228592051764897 0.7874626193476445 0.82887385845541 0.9227193989028771 1.014257814270493 1.0192803296350819 1.0007457190389457 1.2295878137818328 1.0 17.441407311436222 2.763782901486658 1.4617788601567856 1.0606729496208673 0.838282622360501 0.6531402419627979 0.07206330733331696 0.2528919853923595 1.0935312628550875 0.030159776323250523 0.02951295503203459 580.4741730248955 -2.763782901486658 -0.22239032726036634 RSPS(ph)PKPT(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPSPKPTK 9 2 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BV80 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 2 RS(0.491)PS(0.689)PKPT(0.82)K 76.07300000000002 0.040243 996100000.0 1513200.0 1130000.0 700480.0 865460.0 977320.0 1209300.0 1321000.0 1304400.0 2104300.0 1255300.0 True False 1505053.0993323233 1167611.3669005763 799101.4953186926 975027.1472623878 1101775.9089705213 1125703.9373859994 1257098.1832899451 1401740.9516089913 1585723.4611753642 1175185.6792835998 1.2806938732012227 0.9935547951982865 0.679978925377843 0.8296792281001673 0.937533471001936 0.9578945329492401 1.0697017547527294 1.192782533278912 1.3493386527157398 1.0 20.16445728987456 2.0332202628487654 2.188909149763442 1.201796465465366 0.9279011783552946 0.2920281004339689 0.16217889419884707 0.37068751537415856 3.3580757897334315 0.09100197585537927 0.050115896381404595 107.94940746927789 -2.0332202628487654 -0.2738952871100713 RSPS(ph)PY(ph)YSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 RS(0.165)PS(0.958)PY(0.847)Y(0.02)S(0.009)R 100.38 0.058349 860000000.0 565790.0 655310.0 464700.0 612560.0 604090.0 662550.0 624930.0 562260.0 567500.0 569420.0 True False 562743.8495051786 677121.5972067403 530125.7207551912 690110.0331928078 681017.2807780477 616749.4779749399 594699.7484355672 604218.6962984293 427647.22911040246 533079.1280950112 1.055647876359699 1.2702084203267778 0.9944597205477277 1.2945733509750335 1.2775163102177758 1.1569567170617416 1.1155937591493421 1.1334502974401557 0.8022209210077766 1.0 19.023990171093487 1.3445642727339144 5.575460110165354 0.9040125751377043 1.1677128334664895 0.5118742951608404 0.10213670984912054 0.14973614911874622 6.352069317600619 0.06889397708942865 0.024384053770808493 22.108754271468957 -1.3445642727339144 0.2637002583287852 RSPSKPLPEVTDEYKNDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RSPSKPLPEVTDEYKNDVK 19 3 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 SSB Lupus La protein 0 ; 208.86 1.0978e-16 972400000.0 1209040.0 897210.0 854740.0 774740.0 799680.0 1206130.0 1196270.0 1190620.0 2088280.0 1237860.0 False True 1202530.6629769707 927073.0924751026 975079.9624667355 872822.004564118 901514.5079252922 1122753.0720246218 1138401.8499048152 1279470.110245856 1573651.3755183641 1158858.7150147355 1.0376853083092876 0.7999880230984969 0.8414140134885527 0.7531737849104579 0.7779330614205452 0.9688437921531663 0.9823474036611441 1.1040777393036967 1.3579320370372796 1.0 20.144273256831315 1.9978184971117214 1.5272561920385028 1.1784044872566033 0.841012416400055 0.5757348494832957 0.11335437539871708 0.26339567337332986 1.1458965303762054 0.0734713618638696 0.03528265452773008 99.49894986191242 -1.9978184971117214 -0.3373920708565483 RSPT(ph)EDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPTEDFR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 RS(0.105)PT(0.895)EDFR 95.483 0.018605 1414800000.0 1058500.0 1161000.0 1076800.0 1184500.0 1025800.0 1271500.0 1158400.0 1086000.0 1263900.0 1118200.0 True False 1052801.1536104064 1199643.1831606806 1228404.0802866158 1334457.5785504782 1156429.5496070487 1183604.1977890502 1102363.7664822654 1167042.8345962598 952428.7803923126 1046835.5186608167 1.005698731886 1.1459710353497996 1.173445167258056 1.2747538221263328 1.1046907837884907 1.1306496356783893 1.0530439088391692 1.114829229418219 0.9098170279995126 1.0 19.99760334965051 1.3101441219562557 5.4846875318753545 0.955827903536078 1.1293794291148318 0.4830497737565693 0.07034975226251419 0.16073004514018766 8.165431086913475 0.052313409085634595 0.018145077458130307 20.42415614107739 -1.3101441219562557 0.17355152557875375 RSPTGS(ph)TTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSPTGSTTSR 10 1 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 RS(0.084)PT(0.084)GS(0.644)T(0.084)T(0.084)S(0.021)R 84.605 0.015685 100800000.0 132960.0 155400.0 147830.0 134890.0 142350.0 128220.0 144920.0 134670.0 161190.0 156160.0 True False 132244.15813324487 160572.3950587164 168643.1790386056 151967.06016941683 160477.428725447 119356.45319741413 137909.66595183857 144719.75924040377 121466.88433534052 146193.73510469784 0.9045815680031509 1.0983534618889186 1.1535595483474748 1.0394909197756277 1.0977038695298384 0.816426593875148 0.9433349921121683 0.9899176536994662 0.8308624459752055 1.0 17.157521962696773 2.7591274256136074 24.98775347274841 0.9239678639933706 1.0651373424970159 0.4284561407673849 0.08194960205693268 797.9640998697191 969489.5768373794 0.024779179036368292 0.026256233611681962 574.2849374678582 -2.7591274256136074 0.14116947850364525 RSQS(ph)IEQESQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSQSIEQESQEK 12 1 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 RS(0.058)QS(0.942)IEQESQEK 122.63 9.3589e-05 0.0 87579.0 87974.0 78659.0 81135.0 87805.0 104140.0 96011.0 85112.0 120320.0 105920.0 True False 87107.48439494158 90902.161408594 89733.50348371545 91406.68268104101 98986.44628899104 96941.04691919127 91366.58113236252 91463.4896299788 90668.74820539853 99160.09491732564 0.8784530154752991 0.9167212020559615 0.9049356352324031 0.9218091487029233 0.9982488053437284 0.9776215623836939 0.9214047365378086 0.9223820298501745 0.9143672994766016 1.0 16.597472031941102 3.4697957453257384 24.9958985545133 0.9494922938872079 0.903649621679869 0.39780439814421564 0.03047049895771437 218.1391896714231 744324.9632272403 0.009051013107134728 0.0122821607466799 2949.8215586797137 -3.4697957453257384 -0.04584267220733895 RSS(ph)AIGIENIQEVQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSAIGIENIQEVQEK 16 1 J3KPC5;P47736-3;P47736;P47736-4;F2Z357;X6R8W7;P47736-2;A0A0A0MQY8 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 RS(0.008)S(0.992)AIGIENIQEVQEK 309.91 1.734e-37 0.0 119470.0 105010.0 95575.0 92624.0 84919.0 111950.0 109680.0 109730.0 136280.0 113740.0 True False 118826.78679436487 108505.19437011452 109031.12924720782 104350.18890304722 95732.93129565321 104211.16000195389 104374.35938171178 117918.6097976499 102695.62005844174 106481.01582228683 1.1159433996448973 1.0190097599294692 1.0239489960273955 0.9799886683763809 0.8990610256332283 0.9786829999431893 0.9802156616904276 1.1074143957684628 0.9644500408395541 1.0 16.700236714086117 4.9512707094521 1.5646722266655688 0.995879596668443 1.2165411493099643 0.36427503234046443 0.04924223173668345 2.4801008024615743 3.792155967458732 0.014806759975232828 0.9777756294202341 89386.2482803657 -4.9512707094521 0.22066155264152132 RSS(ph)DPALIGLSTSVSDSNFSSEEPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 RS(0.142)S(0.858)DPALIGLSTSVSDSNFSSEEPSR;RS(0.373)S(0.627)DPALIGLSTSVSDSNFSSEEPSR 297.35 1.1704999999999999e-70 2472700000.0 364103.0 485601.0 380610.0 427129.0 434734.0 504831.0 501148.0 357673.0 497132.0 487262.0 True False 362142.709903646 501763.9357329972 434196.5796785746 481203.48760547664 490094.7980297045 469933.22121434845 476905.55666872807 384364.37548669317 374620.4798275108 456164.52199401404 0.7938861801891691 1.0999626484314393 0.9518420629920716 1.0548902082564657 1.074381663631736 1.030183625767624 1.045468320473608 0.8426003271945313 0.8212398416912104 1.0 18.799194720443175 1.736899504377941 9.189892186045636 0.8757524742914109 1.0139495555935436 0.25281308649044054 0.092654161373249 0.11413326849208473 37.67113458078786 0.04155248785924762 0.022379518528048942 54.56315874847387 -1.736899504377941 0.1381970813021327 RSS(ph)DSWEVWGSASTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSDSWEVWGSASTNR 16 1 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 RS(0.202)S(0.793)DS(0.004)WEVWGSASTNR;RS(0.018)S(0.578)DS(0.401)WEVWGS(0.002)ASTNR 160.45 9.2986e-09 677710000.0 368866.0 396612.0 362195.0 411288.0 391757.0 407254.0 391119.0 363233.0 445339.0 459350.0 True False 366880.06644086493 409812.99066298275 413188.90774462384 463357.0186296913 441644.9318243405 379101.489552798 372199.0797503255 390339.2909198007 335591.1706868682 430033.88973067916 0.8531422178624897 0.9529783592628936 0.9608287105078975 1.0774895413937764 1.027000295490509 0.8815618922271939 0.8655110414284456 0.9076942544325092 0.7803830784058475 1.0 18.714090833367354 2.7178490581053723 23.333626347573258 0.8818306960960547 0.9780896607401951 0.25850655498758546 0.0734873464940426 454.29478710455857 511806.5067414811 0.023967680375484225 0.022627696910238443 522.214658326469 -2.7178490581053723 0.09625896464414041 RSS(ph)DTEEESR ddPTM_BT-474_Trastuzumab_2h_R1 5 RSSDTEEESR 10 1 Q96IZ7-2;Q96IZ7;C9J713;C9J8Q2;C9JVB3;F8WDM0;C9J367 Q96IZ7-2 RSRC1 Serine/Arginine-related protein 53 1 RS(0.162)S(0.673)DT(0.162)EEES(0.002)R;RS(0.391)S(0.523)DT(0.085)EEES(0.001)R;RS(0.216)S(0.783)DTEEESR;RS(0.224)S(0.771)DT(0.005)EEESR;RS(0.236)S(0.764)DTEEESR 201.09 1.5202e-07 500361000.0 319203.0 412916.0 385622.0 435774.0 403617.0 283808.0 384321.0 323203.0 374338.0 385475.0 True False 317484.4465147875 426659.6594470069 439914.2257134895 490942.9437190856 455015.232524613 264189.0209721709 365729.92498120765 347322.04905157967 282087.4157722114 360873.65547824855 0.8797662054162435 1.1822964989826572 1.2190256036575802 1.360428882148414 1.2608712928118933 0.7320817603658374 1.0134569798300275 0.9624477813191723 0.7816791597002959 1.0 18.461134301800108 2.752969998443785 24.996323809454868 0.910850104665244 1.1927175894568 0.49587070693937696 0.14187768388853045 701.6958063987587 1217248.6527705807 0.044304927997424526 0.04680155935412515 566.2001739359316 -2.752969998443785 0.2818674847915561 RSS(ph)FSMEEES ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSFSMEEES 10 1 P19532 P19532 TFE3 Transcription factor E3 1 RS(0.282)S(0.667)FS(0.051)MEEES 154.88 1.4522e-05 437590000.0 329120.0 429870.0 345040.0 375640.0 367020.0 385240.0 394880.0 351630.0 407450.0 391210.0 True False 327348.0544886698 444177.9630880978 393618.63285855623 423195.98548476293 413757.8215020269 358609.26555741543 375778.1458119104 377870.4161409604 307039.40705027955 366242.6428682681 0.8938010383635525 1.2127969578022673 1.0747482318713357 1.1555071309295353 1.1297368822528109 0.9791575954916907 1.0260360259224977 1.0317488241719428 0.8383496925581025 1.0 18.482440253209724 2.0746181296233317 1.056311905467499 0.9468908787843623 1.0976581804523813 0.26820981308782477 0.09360209612725652 0.667184988640365 1.381754848088 0.06827945154140842 0.0337252561179411 118.74576497684006 -2.0746181296233317 0.150767301668019 RSS(ph)LPNGEGLQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSLPNGEGLQLK 13 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 RS(0.202)S(0.798)LPNGEGLQLK 148.55 2.6534e-05 617110000.0 590670.0 614910.0 504390.0 583590.0 545360.0 655840.0 662880.0 560900.0 899140.0 733360.0 True False 587489.8983496064 635376.9076290556 575403.7277635265 657472.4341631691 614808.3633980311 610503.3244812994 630813.9619524886 602757.2061924884 677558.9948587257 686556.336938916 0.8557053030330944 0.9254548730289938 0.8381012552138472 0.9576379952948646 0.8954958687574266 0.8892253871012145 0.9188087386463278 0.8779428194923452 0.98689496899802 1.0 19.3890185832835 1.2202921046989108 12.503225944386303 0.9935517579268627 0.8961301012231887 0.594217524209179 0.032593977219808265 0.5701037705245906 382.6354889638112 0.02687512668870243 0.007099995203866715 16.607035142997116 -1.2202921046989108 -0.09742165670367398 RSS(ph)LSSHSHQSQIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSLSSHSHQSQIYR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 RS(0.234)S(0.759)LS(0.005)S(0.002)HSHQSQIYR;RS(0.194)S(0.806)LSSHSHQSQIYR 211.13 7.2155e-10 543600000.0 29364.0 78747.0 83317.0 112635.0 77298.0 71461.0 86211.0 40592.0 72639.0 85744.0 True False 29205.907486647113 81368.04629143335 95047.30939565384 126894.57945127336 87141.4421188591 66521.06927109983 82040.64457199811 43621.181161999455 54738.09176273221 80271.74451086827 0.36383795648907097 1.0136573807788198 1.1840693132411624 1.5808125290474115 1.085580519644253 0.8286984377434741 1.0220363973887516 0.5434188758174233 0.6819098313643979 1.0 16.292604630957815 2.1495587317960627 1.8409125000816082 0.7130148274870841 1.0646840261444495 0.1080990200866685 0.3095684791544263 0.6237444807786615 4.127762238113641 0.17503833384620582 0.10197263496939174 141.1103054017586 -2.1495587317960627 0.35166919865736535 RSS(ph)PESDR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSPESDR 8 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 RS(0.019)S(0.981)PESDR;RS(0.341)S(0.659)PESDR 117.02 0.0020012 78037000.0 40981.0 49145.0 44526.0 50369.0 47238.0 34790.0 41571.0 38287.0 48720.0 50934.0 True False 40760.36284941712 50780.76161622017 50794.87377307008 56745.71023555008 53253.47929843807 32385.049186851025 39560.05191335828 41144.17035744663 36713.60881455294 47683.34851320869 0.854813349321014 1.0649579612084807 1.0652539168678448 1.1900529640830706 1.116815008989698 0.679168938353398 0.8296408106154669 0.862862438153842 0.7699461124124486 1.0 15.541197930655201 2.7527852451614185 24.990791780055307 0.823692897572601 1.0664413674857944 0.5255937156595863 0.10910412508874516 606.2084187358606 1065027.1782367702 0.03318878706291111 0.035049930126640025 565.9593578592563 -2.7527852451614185 0.24274846991319343 RSS(ph)PPGHYYQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSPPGHYYQK 11 1 D6RDK6;D6RBN5;Q9NX40;D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;Q9NX40-3;Q9NX40-2;Q9NX40-4 D6RDK6 OCIAD1 OCIA domain-containing protein 1 1 RS(0.402)S(0.598)PPGHYYQK 99.566 0.0028662 178430000.0 185630.0 223190.0 253240.0 187800.0 206530.0 340160.0 236780.0 180770.0 257820.0 257840.0 True False 184630.58870543164 230618.74422879572 288893.990798461 211575.46074443223 232830.37130078362 316645.5398505098 225326.046812561 194259.97533146036 194283.71561100258 241384.43045206988 0.764881928629993 0.9554002459764619 1.1968211464899132 0.8765083164153927 0.9645625066402749 1.311789411013334 0.9334738217811547 0.8047742556040013 0.8048726061044779 1.0 17.88097309819343 4.7232124844820955 5.227912041697151 0.9803443299431779 0.7576178908116405 0.15691824851694447 0.15236778614894764 0.2968238749409202 26.840241748527905 0.03887546891303528 0.22863543376804935 52870.38640616075 -4.7232124844820955 -0.22272643913153733 RSS(ph)PSARPPDVPGQQPQAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 RS(0.154)S(0.825)PS(0.021)ARPPDVPGQQPQAAK 149.62 7.6248e-08 908730000.0 378140.0 332480.0 342230.0 330080.0 318970.0 432310.0 421730.0 382950.0 451930.0 409800.0 True False 376104.1362553033 343546.39581159566 390413.0092835146 371868.09415613534 359588.9388166902 402425.4272482773 401329.3087349498 411527.6735806984 340557.90705174307 383646.2131525686 0.9803410625761448 0.8954770933056857 1.0176381152712042 0.9692995301591851 0.9372930749447764 1.0489493013404008 1.0460921937351404 1.072674926722245 0.8876873936881786 1.0 18.549416989032494 2.7401783138916946 24.99017650292887 1.0231687254941184 0.9601422977594032 0.15723171605414743 0.05570840155281488 221.38573028957865 3419996.619455824 0.017270579897394844 0.017447508830878665 549.766552274847 -2.7401783138916946 -0.06302642773471523 RSS(ph)PVPPVPER ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSPVPPVPER 11 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RS(0.186)S(0.814)PVPPVPER;RS(0.131)S(0.869)PVPPVPER 121.79 0.00024766 7235600000.0 2923900.0 3249000.0 3033600.0 3382600.0 3275700.0 3315000.0 3140700.0 3065200.0 3500300.0 3386800.0 True False 2908158.0472758305 3357141.0009380276 3460704.511476116 3810836.8131742124 3692840.978404964 3085841.852670631 2988772.342360886 3293940.7887702184 2637697.9666169863 3170651.5244146367 0.9172115020784987 1.0588173992276937 1.0914805631675428 1.2019096970543826 1.1646946849785813 0.9732516578719059 0.9426366534911688 1.0388845205492405 0.8319103964299439 1.0 21.596347893746277 2.648533014352491 7.860772604668364 0.9644141495063583 1.091767014957531 0.3600786852851685 0.08596065959614191 0.3635316140994099 28.467790343081468 0.029028963826928916 0.027346263729665567 445.1773032805321 -2.648533014352491 0.12735286545117264 RSS(ph)PVPPVPERR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSPVPPVPERR 12 2 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 RS(0.193)S(0.807)PVPPVPERR 59.15 0.079598 795090000.0 129150.0 176220.0 151660.0 170130.0 146770.0 157370.0 161470.0 128770.0 220340.0 152140.0 True False 128454.67074991378 182085.37617276062 173012.40974764884 191668.4405561779 165460.28952605437 146491.38230913336 153659.0792246988 138379.47128081063 166040.15940473296 142430.29494639274 0.9018774467767617 1.2784174619682778 1.2147163622231243 1.3456999483734635 1.161693090562858 1.0285128059607622 1.0788370499585942 0.971559255233539 1.1657643443568406 1.0 17.11989651484519 2.826869201772163 4.670618821583156 1.0434846967648101 1.1999340902706155 0.231209422750578 0.11849448061524256 0.2938404546510063 11.127373841511314 0.036018483530842964 0.03818591114867075 671.2266664274846 -2.826869201772163 0.15644939350580533 RSS(ph)QPS(ph)PTAVPASDSPPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSQPSPTAVPASDSPPTK 19 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 RS(0.137)S(0.864)QPS(0.974)PT(0.025)AVPASDSPPTK 126.59 8.7717e-05 287940000.0 198670.0 205790.0 219270.0 185780.0 184160.0 233560.0 189920.0 195660.0 272060.0 233470.0 True False 197600.38279431182 212639.5957473179 250141.31007099416 209299.7289515475 207611.68439816165 217414.54694110152 180732.84403514463 210261.1427413485 205014.45841722653 218569.74471627688 0.9040610037350542 0.9728683904688782 1.1444461830510897 0.9575878364283095 0.9498646972739079 0.9947147407035913 0.8268886632491247 0.96198649549729 0.9379818724835575 1.0 17.737734185745385 3.4968436905012195 24.793356944443445 0.9400739812059797 1.0115857576134408 0.12893338754241712 0.07119027301068005 1225.4406710193111 1540516.186225316 0.01899086970975469 0.028956506356577122 3139.3785781803012 -3.4968436905012195 0.07151177640746109 RSS(ph)RS(ph)S(ph)PELTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 RS(0.449)S(0.563)RS(0.983)S(0.97)PELT(0.034)R 55.414 0.08286 399210000.0 334790.0 432900.0 312480.0 363870.0 392340.0 501960.0 399780.0 388560.0 429250.0 367260.0 True False 332987.52783866605 447308.81480642396 356474.4678751498 409935.90469156846 442302.17341862863 467260.68668674125 380441.1140920927 417556.3202677004 323467.08915531286 343821.1523728945 0.9684905234612246 1.3009927158911123 1.0368020274928635 1.192294022233305 1.2864309550650497 1.3590225134838976 1.106508751618288 1.2144579162332505 0.9408004333732601 1.0 18.391298778661604 1.2392384338624947 24.999984728945503 0.9704001345553122 1.1891247154921947 0.35337564529782683 0.1148735813629555 17.865604450835495 659159.7878951535 0.08475142086974082 0.026730781487015885 17.347561422150466 -1.2392384338624947 0.21872458093688252 RSS(ph)RS(ph)SPELTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RS(0.402)S(0.604)RS(0.531)S(0.43)PELT(0.034)R;RS(0.407)S(0.551)RS(0.861)S(0.181)PELTR 117.03 0.023865 838310000.0 957840.0 1150170.0 916460.0 1083870.0 1091010.0 1067550.0 1085360.0 1011910.0 1168430.0 1091890.0 True False 952683.0958660276 1188452.7131575537 1045489.6019868794 1221087.8308683038 1229943.6565770966 993752.7812423932 1032856.9903221613 1087423.862574865 880486.0826598542 1022204.64538594 0.9319886190757194 1.162636775837431 1.0227791535736448 1.1945629834300686 1.2032264401544794 0.9721661760470629 1.0104209514056743 1.0638025051865239 0.8613598917146585 1.0 19.963252622084884 2.711062862214083 24.909736207324308 0.994354782449815 1.1069756165051519 0.3076058132521985 0.09002021255446288 942.6710518278278 853948.3534759562 0.02875555798452341 0.02711689980101646 514.1180625228873 -2.711062862214083 0.11262083405533685 RSS(ph)RSSPELT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 RS(0.408)S(0.59)RS(0.004)S(0.051)PELT(0.947)R 111.03 0.0018924 1314400000.0 722010.0 844340.0 739770.0 849390.0 873580.0 803020.0 868690.0 733300.0 862100.0 771320.0 True False 718122.7783828527 872443.3464856927 843923.1858038905 956922.6869100805 984825.2348856754 747509.1175057513 826668.1459819394 788022.5696219507 649647.0065481554 722093.6972397253 0.9945008260395405 1.2082134906047426 1.1687170086511909 1.3252057047001133 1.3638468783902524 1.035196845455346 1.1448211626025269 1.091302378949221 0.8996713432501842 1.0 19.46182652453072 1.652524074647979 1.2710843770466902 0.9550308190145141 1.2000044303850042 0.39574336583536296 0.10964415219913147 0.4386799349859466 1.3501334769121232 0.0958082860623141 0.035383940336497784 44.92872297348404 -1.652524074647979 0.24497361137049 RSS(ph)SLKER ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSLKER 8 2 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 RS(0.035)S(0.749)S(0.216)LKER 65.241 0.051018 198500000.0 330160.0 177980.0 129570.0 234070.0 122570.0 145150.0 153560.0 161240.0 296430.0 236270.0 True False 328382.4552442242 183903.95670881803 147812.32975737075 263703.2380002625 138178.562970692 135116.12214634742 146131.7161438333 173272.5475601301 223378.79845849625 221191.04631907624 1.4846100721930688 0.8314258636108163 0.6682563883899081 1.192196711343645 0.6247023343402622 0.6108571047285406 0.6606583701088556 0.7833614897330793 1.009890780733792 1.0 17.754933461761205 4.736603011513128 5.405531787425805 0.7979837105030001 1.510356687857811 0.5352331192774862 0.1849654973984514 0.10892725800569537 11.907687381471241 0.04363212938075903 0.28802524570394084 54525.921189718 -4.736603011513128 0.7123729773548109 RSS(ph)SSGDQSSDS(ph)LNSPTLLAL ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 2 RS(0.376)S(0.43)S(0.136)S(0.044)GDQS(0.012)S(0.012)DS(0.589)LNS(0.394)PT(0.006)LLAL 54.225 0.070749 51028000.0 72446.0 91427.0 76050.0 76141.0 90100.0 83118.0 68859.0 58245.0 65529.0 69328.0 True False 72055.95878550733 94470.09242621149 86757.17896155005 85780.44279308744 101573.7009354602 77372.24829872613 65528.027103075096 62591.537662117174 49380.2559936133 64903.42768531305 1.1102026711882402 1.4555485864976752 1.3367118202477042 1.3216627511415493 1.5649974825358144 1.1921134377350404 1.009623519743679 0.9643795388680368 0.7608266274168987 1.0 15.986007051518392 2.288168882589866 2.453386578835849 0.9193551932620349 1.3614796891628542 0.7204226447548736 0.12475801691873342 0.1458822974691668 1.802103560479204 0.05123042755972586 0.037343838945196196 194.16407699233454 -2.288168882589866 0.44212449590081937 RSS(ph)SSGDQSSDSLNS(ph)PTLLAL ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 2 RS(0.384)S(0.468)S(0.106)S(0.038)GDQS(0.002)S(0.002)DS(0.061)LNS(0.927)PT(0.011)LLAL 67.477 0.014356 327710000.0 203890.0 281820.0 247920.0 277500.0 248950.0 243780.0 217820.0 191110.0 227740.0 209860.0 True False 202792.27889430866 291200.2083362125 282824.9810407297 312631.4715472837 280652.30685774516 226928.0623963939 207283.21444679482 205371.59863691655 171616.5285596529 196466.55512981451 1.032197458546135 1.4821871750324278 1.4395578975457384 1.5912706940919978 1.42849914924352 1.1550467826264479 1.0550559829882151 1.045326002185044 0.8735152323827227 1.0 17.583924215139348 2.5130700188780186 2.365465042797116 0.9999729292095955 1.4134926613119747 0.6360957593137653 0.14313206791570654 0.19230945114777298 2.1601799017993644 0.05538810179550044 0.04756761139110589 325.88923807170715 -2.5130700188780186 0.41351973210237924 RSS(ph)SSGDQSSDSLNSPTLLAL ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 1 RS(0.162)S(0.773)S(0.034)S(0.03)GDQSSDSLNSPTLLAL 227.08 2.3145999999999997e-25 228930000.0 261380.0 295040.0 285760.0 298460.0 326800.0 370130.0 359600.0 310490.0 415490.0 379800.0 True False 259972.7591220482 304860.22804455337 325992.5241295538 336245.0053982065 368416.0429046438 344543.7842923015 342204.7741945983 333660.34043627395 313098.05678075954 355560.83883686055 0.731162520519673 0.8574066509738161 0.9168403505739467 0.9456750256810013 1.0361547242093259 0.9690149945067097 0.962436626356396 0.9384057634911952 0.8805752000276276 1.0 18.439736910170744 4.6610365659260085 1.3410001029985625 0.9607058157920679 0.6551205574914997 0.7775789696909263 0.038341236086703666 0.5370071077832582 0.9526946590705178 0.011194459728770903 0.215134635905455 45818.046212428875 -4.6610365659260085 -0.30558525830056826 RSS(ph)VTVEER ddPTM_BT-474_Trastuzumab_2h_R1 2 RSSVTVEER 9 1 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 RS(0.23)S(0.77)VTVEER;RS(0.225)S(0.775)VTVEER 145.14 5.9958e-05 357580000.0 165297.0 213530.0 177785.0 190595.0 180290.0 180102.0 190024.0 171345.0 192373.0 192746.0 True False 164407.05931822298 220637.21696838932 202815.58266507773 214724.30745785421 203248.8628374489 167651.97265450555 180831.81315782608 184131.6339722804 144965.251816133 180444.78526184714 0.9111211447848078 1.222740888013018 1.1239758598219831 1.1899723627161813 1.126377038507986 0.9291040049244002 1.0021448549783099 1.020432004754713 0.8033773411948201 1.0 17.461197925316288 2.7457391506824167 24.19026536681507 0.9621928828399794 1.1255139573978756 0.4165432749308141 0.09607806100072923 349.21195541056824 1176776.8608129423 0.02857171223451839 0.029704842146809584 556.8511881924037 -2.7457391506824167 0.16332107455789624 RSSKDEEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSKDEEPR 9 2 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 0 51.276 0.08760599999999999 12160000.0 27207.0 31273.0 28813.0 27124.0 24802.0 28571.0 31337.0 26158.0 41427.0 30827.0 False True 27060.52053498187 32313.902900072302 32869.61995291444 30557.895618913633 27960.3876870287 26595.95401889971 29821.1095910348 28110.042787632592 31217.870943359703 28859.594467677478 0.9376611499267408 1.1196935887738695 1.1389494744885678 1.0588470206377376 0.9688420160700496 0.9215636778502543 1.0333170005016603 0.9740276433584547 1.0817155098393179 1.0 14.8167634069052 3.342323153844715 5.827996429632871 0.9931735750845959 1.0750160891175868 0.20494431171125482 0.06371661936968108 0.2847766660800506 13.796001439621698 0.017613764171315726 0.023908501694220128 2199.4958852296418 -3.342323153844715 0.08184251403299092 RSSQPSPT(ph)AVPASDSPPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSQPSPTAVPASDSPPTK 19 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 RS(0.169)S(0.169)QPS(0.286)PT(0.376)AVPASDSPPTK 75.55 0.008344299999999999 950220000.0 840900.0 667240.0 621210.0 634810.0 598690.0 700770.0 668580.0 654760.0 846110.0 763270.0 True False 836372.6878327726 689448.6800449026 708670.9683458855 715176.8809114643 674929.6227863564 652327.4193351424 636238.2311763745 703621.5160039122 637597.5277931327 714557.4551316764 1.170476470193217 0.9648610830291501 0.9917620525214363 1.0008668663035274 0.9445421329513418 0.9129110817477001 0.8903947843622043 0.9846955076191194 0.8922970759232205 1.0 19.446690492617236 7.9999999999976605 0.9810117183212205 0.9439927512473988 193.36682062351446 0.7159651205377722 0.04085418431949025 782.2211297857474 1.1481206633950394 0.011980461750235379 338166.8891984301 99999999.99946132 -7.9999999999976605 192.42282787226705 RSSS(ph)LKER ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSLKER 8 2 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 RS(0.061)S(0.151)S(0.788)LKER 65.348 0.050801 169650000.0 303850.0 168930.0 137500.0 216980.0 120690.0 157900.0 146710.0 188230.0 296260.0 253260.0 True False 302214.10536090826 174552.73292965864 156858.80482857506 244449.64575253968 136059.15611432507 146984.744656619 139613.07681337465 202276.67841257303 223250.69268061305 237096.7299732053 1.2746447637428908 0.7362089428622028 0.6615814770887052 1.031012303628841 0.5738550511839676 0.6199357733581142 0.5888443793769427 0.8531398911972875 0.9416017365817022 1.0 17.85511623981273 4.740375755051685 24.463724755464796 0.7623835085734565 1.2746449925844445 0.452036169875919 0.16302614938040766 104.60566600814889 1409681.1116798574 0.03826136910898581 0.24617918380054749 55001.65467556878 -4.740375755051685 0.512261484010988 RSSS(ph)SGDQSSDSLNS(ph)PTLLAL ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 2 RS(0.046)S(0.178)S(0.768)S(0.008)GDQSSDSLNS(0.999)PT(0.001)LLAL 145.14 2.6221e-09 0.0 138790.0 183870.0 163720.0 172950.0 180160.0 147120.0 124690.0 103870.0 120930.0 129660.0 True False 138042.77006101873 189990.00179823805 186770.35292024937 194845.45226703698 203102.3081080192 136949.94068322855 118658.26833794343 111621.30684117276 91128.42187897961 121384.98779248915 1.1372309918340684 1.5651853268958678 1.5386610512293186 1.6051857466932438 1.6732077977816169 1.1282279890932485 0.977536600660972 0.9195643454031757 0.7507388148752469 1.0 16.88923048271455 2.511191336018033 3.179221130348221 0.9119885133790412 1.513618489598002 0.778350322887583 0.14936057678244619 0.11413423084077734 2.3464166167867284 0.05389075994298636 0.04749943944640855 324.4825423134076 -2.511191336018033 0.6016299762189609 RSSSSS(ph)AAAST(ph)PPPGPPAPADPLGYLPLHGGYQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYK 35 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 2 RS(0.171)S(0.179)S(0.21)S(0.223)S(0.236)AAAS(0.221)T(0.76)PPPGPPAPADPLGYLPLHGGYQYK 67.828 0.0057583 100510000.0 19807.0 23272.0 24769.0 22810.0 23082.0 29909.0 23545.0 23203.0 29465.0 30009.0 True False 19700.36131276458 24046.594451778936 28256.259903992548 25697.74366123801 26021.355882267402 27841.461228212906 22406.038399365432 24934.525682446638 22203.745560771808 28093.799928002503 0.701235196493595 0.8559395494167553 1.0057827697358988 0.9147122755588424 0.9262312662919838 0.9910179932783646 0.7975438871490007 0.8875454992328446 0.7903432649792674 1.0 14.777964154121099 4.679921107442429 3.6730968165261966 0.9072441366401868 0.6899836308532482 0.4364797712074876 0.07232428117240124 0.2206107286364589 5.2097903580632545 0.0174308500571644 0.11609110178234683 47854.315379548294 -4.679921107442429 -0.21726050578693856 RST(ph)SPIIGS(ph)PPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSTSPIIGSPPVR 13 1 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 2 RS(0.331)T(0.423)S(0.245)PIIGS(1)PPVR;RS(0.393)T(0.474)S(0.132)PIIGS(1)PPVR 83.42299999999999 0.008837600000000001 2120830000.0 949620.0 1134850.0 996490.0 1104940.0 1077580.0 1242680.0 1211510.0 1003840.0 1314320.0 1265930.0 True False 944507.3514327003 1172622.7962186872 1136787.1303536508 1244825.2907079502 1214803.4256829442 1156776.4565540673 1152904.632882363 1078751.6381962348 990423.4469856998 1185137.2635828007 0.7969603019462491 0.9894404911999131 0.9592029255050321 1.0503638092896566 1.0250318364055648 0.9760696014713135 0.9728026181515929 0.9102334989746669 0.8357035741088256 1.0 20.176622732263564 -0.08133393247098519 13.599355758673488 0.9999999949004622 0.9522867308185887 0.03844670144724416 0.07537382316189392 0.0 0.0 0.07337788266965518 0.01729533280827468 0.8292129339278418 0.08133393247098519 -0.047713264081873485 RSTAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_BT-474_Trastuzumab_2h_R1 1 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 RSTAPSAAASASASAAAS(0.087)S(0.913)PAGGGAEALELLEHCGVCR 65.967 0.0023147 350060000.0 33023.0 48108.0 31917.0 47185.0 39443.0 44943.0 45335.0 34928.0 62139.0 43215.0 True False 32845.20783720023 49709.24569809989 36410.63617246277 53158.61616201293 44465.83225302285 41836.196194442244 43141.97285348192 37534.50472079026 46825.67606994059 40456.98170177711 0.8118551225426061 1.2286938769808515 0.8999839988276584 1.3139540797646276 1.099089214830617 1.0340908894991676 1.0663665710778139 0.9277633461999346 1.157418920054625 1.0 15.304101071014912 2.6148193928771195 4.535339169285025 1.025004076323701 1.0832440879604979 0.006348791251616692 0.14533718513117 0.9612472395307952 31.33316552190307 0.04568923891035121 0.04278902566146568 411.926178505559 -2.6148193928771195 0.05824001163679693 RSVSDNDIR ddPTM_BT-474_Trastuzumab_2h_R1 6 RSVSDNDIR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 136.49 0.00030677 14102790000.0 10291500.0 14147880.0 12054820.0 12036130.0 11506950.0 12088950.0 12848770.0 11208920.0 15544450.0 12920770.0 False True 10236091.707493147 14618783.633225944 13752033.87362622 13559902.823907798 12972291.875463871 11253269.340827333 12227225.908032047 12045386.528142469 11713728.582458494 12096155.396572264 0.8462268689433164 1.2085479356001434 1.1368929567094672 1.1210093107559054 1.0724309873813196 0.9303178548794286 1.0108357165696569 0.9958028921781064 0.9683844327742235 1.0 23.52804524297907 2.88439457704324 6.075373345989414 0.9848964886512709 1.092224327793574 0.21423981789334756 0.09010332352970227 0.33179353146337137 15.456192248263743 0.026569372093364685 0.02830331551568369 766.2925036580817 -2.88439457704324 0.10732783914230304 RSYS(ph)PDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 RSYSPDGK 8 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 RS(0.006)Y(0.001)S(0.993)PDGK;RS(0.001)YS(0.999)PDGK;RS(0.032)YS(0.968)PDGK;RS(0.001)YS(0.999)PDGK 137.55 0.00078747 3316110000.0 1916170.0 1672000.0 1520870.0 1400550.0 1524250.0 1811920.0 1880260.0 1787030.0 2512940.0 1860420.0 True False 1905853.553626503 1727651.509254657 1734995.276360982 1577859.486398373 1718354.202562433 1686666.2352008927 1789304.6405092753 1920387.252954471 1893659.6086708268 1741686.4028143052 1.0942575830797832 0.9919417792221551 0.9961582484409873 0.9059377645991769 0.9866036731904373 0.968409831112818 1.0273403051307206 1.1026021962687496 1.087256354307501 1.0 20.732053453977016 1.992627248088538 5.095222025277371 1.073100254953271 0.9872955752869832 0.2930668726389096 0.04995570339695969 0.1913362263821394 14.775531060651792 0.021156022325730665 0.013832283075493586 98.31668982628509 -1.992627248088538 -0.08580467966628791 RSYS(ph)PDGKES(ph)PSDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RSYSPDGKESPSDKK 15 3 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 2 RS(0.318)Y(0.006)S(0.676)PDGKES(0.596)PS(0.404)DKK 113.17 0.0010141 113340000.0 157010.0 97803.0 80639.0 90918.0 87780.0 132410.0 136370.0 120430.0 256580.0 123850.0 True False 156164.67560545073 101058.31373183796 91992.27027324712 102428.2094779674 98958.26268717766 123256.80835961325 129773.26211601042 129417.09813114877 193349.2969958537 115945.78696668033 1.3468766713388922 0.8715997051352921 0.7934076147129279 0.8834146729919775 0.8534873519433317 1.0630555157216184 1.119258107699107 1.1161862928951418 1.6675836358885299 1.0 16.82309087326761 1.8888273236242634 1.524662687800391 1.3058199754020998 0.9427904687536287 0.2803267083330748 0.21474964835895485 0.4629122842179107 2.0133212441560286 0.14839139430290046 0.06522930057114973 77.41539314132949 -1.8888273236242634 -0.3630295066484711 RSYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSYSPR 6 1 P11274-2;P11274;O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 P11274-2;O75494-2;O75494-6;Q5JRI1 BCR;SRSF10 Breakpoint cluster region protein;Serine/arginine-rich splicing factor 10 1 RS(0.042)YS(0.958)PR;RS(0.005)YS(0.995)PR 91.783 0.045946 195830000.0 517030.0 639660.0 558720.0 587450.0 607320.0 551960.0 635130.0 516970.0 735200.0 624070.0 True False 514246.3679274337 660950.6964173641 637382.9195187009 661821.109767395 684658.6021323394 513804.30437408097 604406.3354677837 555548.9265204686 554019.8111752742 584241.3183067925 0.8801951382312135 1.1312974206153124 1.0909583070329905 1.1327872388167253 1.1718763816920195 0.879438492750141 1.03451487686532 0.9508894854107918 0.9482722187141707 1.0 19.156204865483772 2.73889201380197 24.999999949202614 0.9649078486761247 1.0875770221286971 0.3404551741301681 0.08242291968476974 33.820878317102384 2551464.101548074 0.02522978113073311 0.025294986099250627 548.1406542210087 -2.73889201380197 0.12266917345257244 RSYS(ph)SPDITQAIQEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 RSYSSPDITQAIQEEEKR 18 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 RS(0.002)YS(0.911)S(0.087)PDITQAIQEEEKR;RS(0.2)YS(0.747)S(0.054)PDITQAIQEEEKR 268.13 1.1155999999999995e-31 294550000.0 374870.0 293220.0 279920.0 295670.0 271540.0 344900.0 353950.0 335150.0 521390.0 402290.0 True False 372851.74157197215 302979.65044476715 319330.30289174354 333101.79168427177 306119.0094563247 321057.8748072701 336828.086279694 360160.5948572161 392900.4207680578 376615.50778220285 0.9900063429878535 0.8044800179072302 0.8478947263011076 0.884461167427298 0.8128157315108586 0.8524818234328743 0.8943553287627286 0.9563084562771041 1.0432401551432464 1.0 18.522732881026897 1.6261720474006949 2.106314971760491 1.0210529563169024 0.8611212848018942 0.6096017365686917 0.04960154165962815 0.17534218231433352 1.6765638295911414 0.03508468717672559 0.013186963270415072 42.28360892056109 -1.6261720474006949 -0.1599316715150082 RT(ph)ASPPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RTASPPPPPK 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RT(0.604)AS(0.396)PPPPPK;RT(0.61)AS(0.39)PPPPPK;RT(0.598)AS(0.402)PPPPPK;RT(0.602)AS(0.398)PPPPPK 79.46600000000002 0.015775 1922913000.0 2079850.0 2167700.0 1856130.0 1923710.0 1857880.0 2192690.0 2197180.0 2128760.0 2741510.0 2218870.0 True False 2068652.318693057 2239850.5840976792 2117456.970228824 2167251.4887575707 2094470.005482497 2041114.5013370598 2090894.0093573034 2287618.8808242483 2065901.5948519108 2077259.8169298188 0.9958563208287138 1.0782717529327501 1.0193510474575185 1.0433222994515723 1.0082850437929882 0.9825995211103724 1.006563546994153 1.1012675748021445 0.9945321129377569 1.0 20.986250244415515 RT(ph)GTPSDPR ddPTM_BT-474_Trastuzumab_2h_R1 7 RTGTPSDPR 9 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 RT(0.499)GT(0.499)PS(0.001)DPR;RT(0.497)GT(0.497)PS(0.005)DPR;RT(0.499)GT(0.499)PS(0.001)DPR;RT(0.499)GT(0.499)PS(0.003)DPR;RT(0.499)GT(0.499)PS(0.001)DPR;RT(0.499)GT(0.499)PS(0.003)DPR;RT(0.495)GT(0.495)PS(0.011)DPR 69.01 0.03308 4116415000.0 2271059.0 2699108.0 2415158.0 2555719.0 2420601.0 2442186.0 2465379.0 2261795.0 2895351.0 2545492.0 True False 2258831.8706823736 2788946.178134758 2755191.253470341 2879272.7633562265 2728850.1893238206 2273363.430107473 2346119.1991076306 2430581.6280622915 2181830.541765698 2383036.521254655 0.9478796697136272 1.1703329568219936 1.1561682873495154 1.2082369437797396 1.1451147160292352 0.953977586927858 0.9845082851992601 1.01995148055163 0.9155673957598338 1.0 21.184369631061855 2.742160367116437 24.73642000400697 0.9804808517697783 1.1343297789434688 0.5345691248129911 0.06999050489823562 213.54604539620942 1467427.6275051653 0.02170636360918739 0.022207818265102663 552.2813364493181 -2.742160367116437 0.15384892717369048 RT(ph)NSSSSSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTNSSSSSPVVLK 13 1 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 RT(0.479)NS(0.479)S(0.031)S(0.01)S(0.001)SPVVLK 90.379 0.0041124 172440000.0 165250.0 154170.0 167490.0 138440.0 158530.0 193480.0 187800.0 153080.0 228130.0 205700.0 True False 164360.31236100086 159301.45525226695 191071.13615082196 155966.48980542712 178717.85581907324 180105.1830029302 178715.3965343313 164503.60692448955 171910.4182853851 192572.0498913699 0.8535003519654939 0.8272304072274719 0.9922059626960682 0.8099123932751818 0.9280570878270661 0.9352612858643179 0.9280443171018059 0.8542444607994057 0.8927070069740647 1.0 17.55503879854618 RT(ph)NSTGGSSGSSVGGGSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RTNSTGGSSGSSVGGGSGK 19 1 G8JLD3;X6RLX0;Q8IUD2-3;Q8IUD2;Q8IUD2-2;X6RM00;Q8IUD2-4;Q8IUD2-5;K7EKH8;K7EIZ7 G8JLD3 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 RT(0.794)NS(0.165)T(0.037)GGS(0.001)S(0.001)GSSVGGGSGK;RT(0.546)NS(0.367)T(0.084)GGS(0.002)S(0.001)GSSVGGGSGK;RT(0.486)NS(0.486)T(0.022)GGS(0.002)S(0.003)GS(0.001)SVGGGSGK 133.15 7.181e-06 350231000.0 250651.0 251742.0 226354.0 246116.0 242721.0 272008.0 259519.0 248126.0 343024.0 307927.0 True False 249301.52286594425 260121.08028874767 258222.67569576198 277274.260365158 273630.0806299203 253204.7271979586 246965.0745111456 266642.42207829846 258490.33148610868 288274.83523043204 0.8648050138218463 0.9023371050782851 0.895751706836818 0.961839975187287 0.9491986368189042 0.8783448856906285 0.8567000803720326 0.9249590650712132 0.8966801811871121 1.0 18.13708537761431 -1.8045090539037214 2.3256748137276944 1.0333776282161398 0.9049102760785279 0.44612461504817646 0.032250603207458706 9111334.871028699 5478451.615060414 1710929.8424594777 0.008551805526414007 0.015685231977344272 1.8045090539037214 -0.12846735213761185 RT(ph)PDPAK ddPTM_BT-474_Trastuzumab_2h_R1 3 RTPDPAK 7 1 Q8N6N3;Q8N6N3-3;Q8N6N3-2 Q8N6N3 C1orf52 UPF0690 protein C1orf52 1 RT(1)PDPAK;RT(1)PDPAK;RT(1)PDPAK 64.297 0.043513 1116100000.0 2894050.0 2428250.0 2086210.0 1916070.0 2098270.0 2000170.0 2558880.0 2611590.0 3869110.0 2843380.0 True False 2878468.7563591814 2509072.8333418784 2379930.234337614 2158644.265540915 2365472.247079335 1861902.9557937295 2435097.1985291257 2806480.1071853135 2915619.6839177986 2661913.0540599106 1.081353409334307 0.9425825646390206 0.894067607019613 0.810937180028695 0.8886361797097586 0.6994604699631277 0.914792162281616 1.0543094572172114 1.0953098860501618 1.0 21.34403201866371 1.773079395645572 4.4088437789561805 1.0566279211620686 0.8804786537003383 0.38003538379544866 0.09337682548762072 0.20665565829305615 8.12348016297189 0.04967492530841071 0.026113600160520098 59.303373026835516 -1.773079395645572 -0.17614926746173032 RT(ph)PDSTFSETFK ddPTM_BT-474_Trastuzumab_2h_R1 6 RTPDSTFSETFK 12 1 Q9NZI5-3;Q9NZI5;B7Z1S6 Q9NZI5-3 GRHL1 Grainyhead-like protein 1 homolog 1 RT(0.982)PDS(0.018)TFSETFK;RT(0.995)PDS(0.005)TFSETFK;RT(0.982)PDS(0.018)TFSETFK;RT(0.991)PDS(0.009)TFSETFK;RT(0.987)PDS(0.013)TFSETFK;RT(0.961)PDS(0.039)TFSETFK 221.85 1.5353e-11 5934240000.0 4426980.0 4047190.0 3558730.0 3367810.0 3305010.0 4473120.0 4652320.0 4151500.0 5657310.0 4376480.0 True False 4403145.631563715 4181898.2725719768 4059768.2509643272 3794174.400690663 3725883.433170983 4163903.7429918726 4427269.508011716 4461306.010889852 4263141.75457017 4097169.299506965 1.0746799338005313 1.0206798808814679 0.9908714905807924 0.9260477474404675 0.9093799061755489 1.0162879389662853 1.080567871223792 1.0888751927890081 1.0405090546497988 1.0 21.96619607710767 2.444206025301502 6.058804647729349 1.0625715351091944 0.9814732942185194 0.29090114432918246 0.04901301534590824 0.20564131456590257 21.78926395881066 0.018402017299820047 0.015539817667321534 278.10322509588497 -2.444206025301502 -0.08109824089067508 RT(ph)PDYFL ddPTM_BT-474_Trastuzumab_2h_R1 2 RTPDYFL 7 1 P67775;P62714;P67775-2;H0YBN9 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 1 RT(1)PDYFL;RT(1)PDYFL 104.2 0.015872 171137000.0 460190.0 472530.0 424130.0 484300.0 418800.0 435140.0 413200.0 421600.0 539980.0 442250.0 True False 457712.38817191526 488257.87539958267 483843.81739595253 545612.3303436026 472131.697577922 405059.7960093803 393211.93742271414 453061.9328414214 406909.164361295 414025.2263707262 1.1055181158504355 1.1792949904998955 1.1686336642751074 1.3178238802653313 1.1403452434928836 0.9783456905755833 0.9497294183485925 1.0942858163810072 0.9828124917126201 1.0 18.65935914759907 2.8746194541086285 4.655729950792525 1.0105429761894102 1.1940703486653104 0.6919148061761679 0.060944318858179414 0.13901595224284796 4.6704522533200405 0.019543512214598276 0.020901050251031967 749.2374103564522 -2.8746194541086285 0.18352737247590012 RT(ph)PS(ph)DDEEDNLFAPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTPSDDEEDNLFAPPK 16 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 2 RT(1)PS(1)DDEEDNLFAPPK 159.77 7.803399999999999e-09 86355000.0 213800.0 162500.0 147360.0 183870.0 172350.0 206860.0 220000.0 207410.0 295810.0 218640.0 True False 212648.9245554133 167908.71426667552 168107.00712391877 207147.9231473844 194297.75090151557 192560.2550960621 209357.75951838595 222887.9874066396 222911.58915092167 204686.20801287872 1.0389020668262787 0.8203225605513724 0.821291325663435 1.012026775806755 0.949246912079638 0.94075832937384 1.022822991108484 1.088925285052013 1.0890405920114374 1.0 17.643054369657094 2.1855295524196436 2.1752168761192743 1.069463380578773 0.921178942471806 0.41703042422963255 0.0698225331381336 0.28424583170610856 2.695712474658114 0.03432807529104485 0.021937772323925513 153.2955515778021 -2.1855295524196436 -0.148284438106967 RT(ph)PSDDEEDNLFAPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTPSDDEEDNLFAPPK 16 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 RT(0.595)PS(0.405)DDEEDNLFAPPK 69.256 0.027378 206340000.0 138300.0 125080.0 112160.0 105510.0 122680.0 136670.0 132230.0 129320.0 181560.0 134110.0 True False 137555.40816657443 129243.21218754316 127951.15308780363 118867.55518181602 138302.57081867114 127222.32458657472 125833.52973234624 138970.51507365415 136816.9707793562 125550.98498265259 1.0956139307515627 1.0294081898712362 1.0191170790534432 0.9467672053567718 1.1015650003684196 1.0133120389629207 1.0022504383357302 1.1068851040304921 1.0897323569246409 1.0 16.937913821437416 1.7428656436214087 24.999999999907363 1.0751329223252528 1.02824105705397 0.08964618182971829 0.04939918262106626 1.4311983520309244 8349.541620203767 0.02218008604449108 0.012299966427413994 55.31789474328146 -1.7428656436214087 -0.04689186527128286 RT(ph)PTMPQEEAAACPPHILPPEK ddPTM_BT-474_Trastuzumab_2h_R1 7 RTPTMPQEEAAACPPHILPPEK 22 1 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 1 RT(0.996)PT(0.004)MPQEEAAACPPHILPPEK;RT(0.998)PT(0.002)MPQEEAAACPPHILPPEK;RT(0.999)PT(0.001)MPQEEAAACPPHILPPEK;RT(0.996)PT(0.004)MPQEEAAACPPHILPPEK;RT(0.999)PT(0.001)MPQEEAAACPPHILPPEK;RT(0.961)PT(0.039)MPQEEAAACPPHILPPEK;RT(0.996)PT(0.004)MPQEEAAACPPHILPPEK 229.85 1.4553999999999999e-26 5764570000.0 4410060.0 4233700.0 3838000.0 3839330.0 3797700.0 4691400.0 4497980.0 4206870.0 6006720.0 4532630.0 True False 4386316.726963727 4374616.145174308 4378357.039505969 4325388.784344623 4281314.584268556 4367094.560367717 4280395.523447775 4520808.001453018 4526444.341924294 4243353.672820226 1.0336910531543047 1.0309336629644734 1.031815252061235 1.0193326123273327 1.0089459692439684 1.0291611063061001 1.0087293809292428 1.065385624208031 1.066713899177751 1.0 22.016773497955075 1.7396874814260714 24.999999999999982 1.0498764261146332 1.0233851704167218 0.17816317736672338 0.01928475736354806 0.21071494329193083 4674.552469944794 0.008423092416117633 0.0046710888940020125 54.9145566158679 -1.7396874814260714 -0.02649125569791133 RT(ph)PTMPQEEAAEK ddPTM_BT-474_Trastuzumab_2h_R1 6 RTPTMPQEEAAEK 13 1 Q9NYV4-2 Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 RT(0.995)PT(0.005)MPQEEAAEK;RT(0.994)PT(0.006)MPQEEAAEK;RT(0.849)PT(0.151)MPQEEAAEK;RT(0.997)PT(0.003)MPQEEAAEK;RT(0.964)PT(0.036)MPQEEAAEK;RT(0.684)PT(0.316)MPQEEAAEK 193.48 1.0718e-06 5961930000.0 4670480.0 3992100.0 3810970.0 3593814.0 3521251.0 4673950.0 4674950.0 4452480.0 6139730.0 4479600.0 True False 4645334.654619105 4124974.6352245896 4347521.450454942 4048790.4839179455 3969661.4427601565 4350850.837794832 4448804.808456716 4784746.666835329 4626675.809666977 4193708.0928214933 1.1076914634498942 0.9836103381361815 1.036677173095747 0.9654440400485651 0.9465755257394178 1.037471073688301 1.0608284386965035 1.140934600342245 1.103242216020378 1.0 21.999795014045475 2.21689704538595 2.9004990425354755 1.0967176410683819 1.0056178832593505 0.23898724072699928 0.053957148160450996 0.27779668943363744 4.808408899552122 0.02203410396107909 0.015754506563441698 164.77717215572065 -2.21689704538595 -0.09109975780903135 RT(ph)QSSGQDGRPQEEPPAEEDLQQITVQVEPACSVEIVVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTQSSGQDGRPQEEPPAEEDLQQITVQVEPACSVEIVVPK 40 2 O60331-4;O60331;O60331-2;O60331-3 O60331-4 PIP5K1C Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma 1 RT(0.333)QS(0.333)S(0.333)GQDGRPQEEPPAEEDLQQITVQVEPACSVEIVVPK 111.42 0.00032924 44781000.0 35338.0 32808.0 29161.0 25066.0 23201.0 31423.0 32644.0 30633.0 38553.0 37459.0 True False 35147.74413442089 33899.99444714521 33266.615328044194 28239.353029925125 26155.509826899135 29250.801971785582 31064.885007809953 32918.990011222144 29052.129733732752 35068.33454973664 1.0022644241793583 0.9666839010864803 0.9486226179593129 0.8052664431461346 0.7458440830659738 0.8341086723208888 0.8858386178491402 0.9387098199526377 0.8284433836607998 1.0 15.097881295914632 3.9176301635471424 5.080353044418039 0.8606055292332906 0.9790220869810272 0.3672670589262995 0.06701260242359593 0.24026867227744336 10.631954139879934 0.0183940349370375 0.03463010038730224 8272.37404926508 -3.9176301635471424 0.11841655774773663 RT(ph)RS(ph)RS(ph)PLGFYVHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTRSRSPLGFYVHLK 15 3 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 3 RT(1)RS(1)RS(1)PLGFYVHLK 115.42 0.0008958999999999998 217990000.0 119690.0 156110.0 62301.0 144090.0 135280.0 194690.0 154040.0 142240.0 231740.0 152460.0 True False 119045.60233880926 161306.02697951224 71072.43927000035 162331.77922611934 152507.10613262013 181231.5385509638 146588.49671005533 152854.67108008472 174630.78215690705 142729.87227242696 0.834062277527918 1.1301490319533753 0.49795069622387916 1.13733570023995 1.0685016647498393 1.2697519843992373 1.027034455900468 1.070936788819741 1.2235054889111872 1.0 17.122927785908395 RT(ph)SDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 35 1 H7C3A2;Q8NHH9-2;Q8NHH9 H7C3A2 ATL2 Atlastin-2 1 RT(0.496)S(0.496)DPS(0.008)AAVNHVS(0.001)STTSLGENYEDDDLVNSDEVMK 260.69 4.0899999999999994e-60 471720000.0 74299.0 103670.0 112510.0 111030.0 122480.0 146390.0 115040.0 94967.0 133520.0 128290.0 True False 73898.98243939501 107120.59328016164 128350.43004554907 125086.38661583769 138077.10200416404 136270.40386499363 109475.07570452329 102053.91977265486 100615.78507633651 120102.42236540509 0.61529968325336 0.8919103476052553 1.0686747820543525 1.0414976163866967 1.1496612581557428 1.1346182798078654 0.9115143021133356 0.8497240751911012 0.8377498396345284 1.0 16.873905723726104 4.678946810033436 3.0298157022024053 0.9930311799849517 0.5789997811596928 0.5597885272331415 0.10245178405864491 0.27497285846114383 3.9468723356092856 0.0295261461233788 0.25276039270427125 47747.07921162247 -4.678946810033436 -0.41403139882525897 RT(ph)SEEDTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTSEEDTPK 9 1 A0A1B0GW41;Q8WYH8-2;Q8WYH8 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 RT(0.729)S(0.271)EEDTPK;RT(0.5)S(0.5)EEDTPK 142.12 6.1585e-05 684260000.0 858900.0 832670.0 739640.0 693400.0 734490.0 770080.0 859070.0 826690.0 1177830.0 801090.0 True False 854275.7778327602 860384.9175903549 843774.8829338704 781184.3689040955 828022.9478366941 716846.1821733327 817513.5021339086 888381.8056467617 887569.5786134024 749963.7503523455 1.1390894258974613 1.1472353392895747 1.125087555948472 1.041629503475444 1.1040839606549984 0.9558411081022867 1.0900706890830751 1.1845663276783511 1.1834833059549976 1.0 19.51646133877762 -0.7222520661164609 7.661542508934003 0.9999999600842084 1.1078794704107724 0.1987081406229918 0.06500166020202917 0.0 0.0 0.06776837525371203 0.01597315923063147 0.18956053855187813 0.7222520661164609 0.10787951032656395 RT(ph)SEEDTPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSEEDTPKK 10 2 A0A1B0GW41;Q8WYH8-2;Q8WYH8 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 RT(0.912)S(0.088)EEDTPKK 89.62899999999998 0.018301 123190000.0 52633.0 54457.0 53913.0 50856.0 48154.0 65367.0 71176.0 66336.0 83847.0 60974.0 True False 52349.62977607604 56269.568325048305 61503.481779803384 57294.36438561684 54286.1264688807 60848.33314736683 67732.94496127567 71286.32916738257 63184.03034223775 57082.58711753226 0.917085794802693 0.9857571488340225 1.0774473422721462 1.0037100152389473 0.9510102679317304 1.065970135902932 1.1865780508829158 1.2488279310222048 1.1068879939191036 1.0 15.800763102188137 2.428464294351379 3.9114769529301765 1.166404857700431 0.9934726709916781 0.45615402973551633 0.07318275764078763 0.16712065198046355 5.393967943136986 0.026193941199628736 0.022024282177332037 268.203409432158 -2.428464294351379 -0.17293218670875277 RT(ph)SFDDRLEDDDFDLIEENLGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSFDDRLEDDDFDLIEENLGVK 23 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 RT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK 111.13 0.047146 76330000.0 85414.0 87789.0 83850.0 69667.0 67472.0 100950.0 89101.0 79245.0 127310.0 94718.0 True False 84954.14051438749 90711.00379542877 95655.35116273476 78486.83505688162 76064.15926212395 93971.56411073894 84790.84423112587 85158.66429795639 95936.1563665997 88673.01614784033 0.9580607969029435 1.022983177251923 1.0787425004609419 0.8851264845443425 0.8578050298334927 1.0597537807224757 0.9562192413727993 0.9603672909464969 1.0819092496712852 1.0 16.436207528130396 -0.6336223751360968 8.70780728782063 0.9999999958100286 0.9811822421488534 0.0020950865270144003 0.07322868209582242 0.0 0.0 0.0704384089412098 0.016602492206106868 0.2324757325396474 0.6336223751360968 -0.01881775366117522 RT(ph)SFSTSDVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSFSTSDVSK 11 1 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 RT(0.484)S(0.484)FS(0.032)TSDVSK 89.46600000000002 0.0071562 434190000.0 544950.0 394050.0 420390.0 444200.0 406280.0 515460.0 494040.0 427050.0 790270.0 518330.0 True False 542016.0497496371 407165.71604174457 479577.25790461636 500435.6744551482 458017.3497897758 479827.463462323 470141.39778392395 458918.6395159605 595518.5475754669 485249.73563536105 1.1169837095118644 0.8390848796828765 0.9883101889312367 1.0312950996251518 0.9438796482600272 0.9888258111754797 0.9688648200258059 0.945737021196057 1.2272413642755016 1.0 18.888367901393973 1.2634685149420237 24.968580577140543 1.1136208724635228 0.97288253674171 0.2950028267376641 0.0836568826864202 204.60222582778857 205101.39283767145 0.05033364722807119 0.018363201579788758 18.342921815708422 -1.2634685149420237 -0.14073833572181282 RT(ph)SMGGTQQQFVEGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSMGGTQQQFVEGVR 16 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 RT(0.735)S(0.265)MGGTQQQFVEGVR 242.21 3.5985e-20 635700000.0 105020.0 126620.0 146070.0 138890.0 116480.0 149900.0 138630.0 118170.0 137590.0 142240.0 True False 104454.58398881888 130834.47015659376 166635.38633679968 156473.45975928754 131313.0375689501 139537.76582664475 131923.93728197215 126988.44545510132 103682.7881115424 133162.12142220914 0.7844166409577616 0.9825201698444317 1.251372271311741 1.1750598299884885 0.9861140402878062 1.047878813707246 0.990701679073502 0.9536378971649655 0.7786207294099919 1.0 17.022824233963654 1.7450834564326754 2.062013309779925 0.8887115463210745 1.0478226839296514 0.165851926927141 0.12724273254139806 0.507754593340236 4.382309800454245 0.09082341469533313 0.038237297179681856 55.60110931757241 -1.7450834564326754 0.15911113760857687 RT(ph)SPQVLGSILK ddPTM_BT-474_Trastuzumab_2h_R1 3 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 RT(0.5)S(0.5)PQVLGSILK;RT(0.5)S(0.5)PQVLGSILK;RT(0.5)S(0.5)PQVLGSILK 168.41 2.731e-05 2985820000.0 4462870.0 4771420.0 4395590.0 3929670.0 3786630.0 4546620.0 4663050.0 4199130.0 6457380.0 5099420.0 True False 4438842.403791475 4930233.830315697 5014450.864846804 4427165.819081862 4268834.885385588 4232322.8609922575 4437480.456919129 4512490.403350091 4866045.223458907 4773970.649766894 0.9298009412789786 1.0327323295455184 1.0503732076969623 0.9273550559633278 0.8941895957391419 0.8865414497675882 0.9295156553037888 0.9452279317155896 1.0192867909015126 1.0 22.186758266123856 3.719813823832 24.456465850525046 0.9363239877207593 1.0071451785565901 0.23881820094439288 0.04889032914943854 732.3326822908763 955377.5625835068 0.013212895370977957 0.020515164354079473 5245.825306082686 -3.719813823832 0.07082119083583083 RT(ph)SSEDNLYLAVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 RT(0.333)S(0.333)S(0.333)EDNLYLAVLR;RT(0.333)S(0.333)S(0.333)EDNLYLAVLR 198.85 1.2582e-08 170030000.0 50158.0 85454.0 68951.0 88515.0 70548.0 70577.0 87929.0 57710.0 94106.0 83625.0 True False 49887.95490107767 88298.28473196604 78658.70146716424 99720.98992435253 79531.86962924356 65698.17811038761 83675.53834860079 62016.61324544223 70914.8372557947 78287.9809050356 0.6372364483584325 1.1278651424038266 1.0047353445298115 1.2737713857420268 1.0158886295166665 0.8391860072375658 1.0688171719500643 0.7921600803662218 0.9058202349325547 1.0 16.256503215550072 2.8719233054907867 7.39905256952691 0.9116052631241786 1.0339738211862761 0.0608956669628139 0.1663441354479392 0.609118783134337 33.93480968195152 0.049789980789331924 0.05290610147447229 744.600469103102 -2.8719233054907867 0.12236855806209757 RT(ph)SSEELRDATSLLAAGEGGLLDEVEPLRPDELER ddPTM_BT-474_Trastuzumab_2h_R1 3 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.332)S(0.332)S(0.332)EELRDAT(0.003)S(0.003)LLAAGEGGLLDEVEPLRPDELER;RT(0.302)S(0.302)S(0.302)EELRDAT(0.046)S(0.046)LLAAGEGGLLDEVEPLRPDELER;RT(0.2)S(0.2)S(0.2)EELRDAT(0.2)S(0.2)LLAAGEGGLLDEVEPLRPDELER 137.19 7.3945e-09 76720000.0 11301.0 15303.599999999999 14634.8 14757.1 16514.0 17421.6 13469.1 10270.68 21283.2 15716.0 True False 11240.15667165913 15812.97107477844 16695.25263203804 16625.34734692044 18616.960013853375 16217.285798035184 12817.548176041319 11037.13029505628 16038.240540268753 14712.99142485546 0.7639613418567294 1.0747624747517166 1.1347286319921206 1.129977369444689 1.2653415934439225 1.1022425915805563 0.8711721366457086 0.7501622189768054 1.0900733968467131 1.0 13.84480298270521 2.2398039512413015 24.9873669079515 0.8889438963209854 1.0917205688562148 0.18147029727550434 0.14616588971958167 42.01440825830865 844388.3026894401 0.053751410449687315 0.04266542830067387 173.70165295622812 -2.2398039512413015 0.20277667253522946 RT(ph)SSLDTITGPYLTGQWPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 RT(0.405)S(0.298)S(0.298)LDTITGPYLTGQWPR;RT(0.747)S(0.126)S(0.126)LDT(0.001)ITGPYLTGQWPR 160.12 1.8804e-11 201133000.0 53439.0 55915.0 55725.0 72806.0 64228.0 66842.0 65910.0 31946.0 67929.0 65872.0 True False 53151.29036163109 57776.096973668704 63570.59562961705 82023.2321350326 72407.05509081842 62221.36986914332 62721.68149934919 34329.972738501056 51188.808151965655 61667.99256414353 0.8618942850514575 0.9368895365545311 1.0308523593255372 1.3300778689968982 1.1741432156317515 1.0089734930875882 1.0170864802208321 0.5566902912040306 0.830070933454206 1.0 15.912234263567793 1.8995746350101943 7.6025190503688 0.7531175643654544 1.0636460400186512 0.3477894175038023 0.1579752534922028 0.2688675844782395 18.045437640404778 0.07056384714288312 0.043982295910447146 79.35506194807299 -1.8995746350101943 0.31052847565319674 RT(ph)SSTLDSEGTFNSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSTLDSEGTFNSYR 16 1 Q92609;Q92609-2;C9J397;C9JWX0;C9JW04;C9JDR8;C9JNM0;C9JED7;F2Z3C3;C9K0P2 Q92609 TBC1D5 TBC1 domain family member 5 1 RT(0.489)S(0.489)S(0.017)T(0.005)LDSEGTFNSYR 104.06 0.00081515 201370000.0 41023.0 50113.0 60147.0 53232.0 43811.0 50340.0 51601.0 35044.0 56863.0 60228.0 True False 40802.13672608376 51780.98091105178 68615.17479290401 59971.16574200005 49390.071161858476 46860.11428761371 49104.86249503739 37659.16122982632 42849.87557516269 56384.197476215006 0.7236448961306161 0.9183598105283837 1.216922078599212 1.0636165526218258 0.8759559126950965 0.831085949345667 0.8708976041691768 0.6679027620409492 0.7599624982378864 1.0 15.783003261727188 2.9780676437573717 3.2264347657880355 0.7988197129428488 0.9922883621984296 0.19395427961002787 0.14132549810134246 0.34473730566118943 7.376216943432959 0.046541658014067636 0.052948997604496145 950.7528671195438 -2.9780676437573717 0.19346864925558083 RTAQEVETYR ddPTM_BT-474_Trastuzumab_2h_R1 4 RTAQEVETYR 10 1 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRX8;J3QR02;J3KTQ4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;; 198.81 4.6493e-07 3642880000.0 1388760.0 1911080.0 1710740.0 1881920.0 1633430.0 1733610.0 1781280.0 1644410.0 1825350.0 1773280.0 False True 1381283.0704657428 1974689.1425277446 1951597.321981358 2120170.8790423945 1841437.6284018739 1613769.6211789818 1695112.681249593 1767124.2243447842 1375516.950936869 1660107.752218611 0.8320442264182915 1.1894945613552608 1.1755847289871353 1.2771284732626198 1.1092277750892547 0.972087275071331 1.0210859379363781 1.064463569899697 0.8285708858949622 1.0 20.662845454598983 2.80493150209564 5.3340994797150865 0.9917957410002625 1.1345484761563662 0.23582584577529087 0.1225039627208466 0.32783097873757566 18.353997376820132 0.03797362780546174 0.04011067631391411 638.1628257735949 -2.80493150209564 0.14275273515610376 RTAS(ph)PPALPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTASPPALPK 10 1 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 RT(0.162)AS(0.838)PPALPK 83.204 0.0096549 189250000.0 311940.0 347650.0 303450.0 285130.0 326050.0 381270.0 353240.0 314220.0 433720.0 391480.0 True False 310260.54969979206 359221.32009113685 346173.1223653175 321227.42876496265 367570.5348502419 354913.70231304056 336152.4316921574 337668.6919768301 326835.5175502443 366495.41123710934 0.8465605303283447 0.980152299529703 0.9445496771618674 0.8764841766521875 1.002933525441706 0.9683987614333981 0.9172077504530579 0.9213449380908363 0.8917861111739636 1.0 18.483435609420972 4.7547932723249176 24.002110343091843 0.9405915232876743 0.8465604044798591 0.3316012493269709 0.04144732857272891 2205.0635452766323 3260380.7820604527 0.009707724156352843 0.2437207276039166 56858.22166982943 -4.7547932723249176 -0.09403111880781512 RTAS(ph)PPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTASPPPPPK 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RT(0.403)AS(0.597)PPPPPK;RT(0.162)AS(0.838)PPPPPK 83.204 0.0096549 1094960000.0 1244050.0 1296400.0 1192830.0 1112170.0 1091790.0 1354990.0 1353720.0 1223920.0 1634120.0 1395920.0 True False 1237352.17302695 1339549.8903096505 1360770.0957357774 1252970.6079666412 1230822.984953676 1261322.730603371 1288235.3918874054 1315255.12533983 1231413.0220861519 1306831.19049276 0.9468339767436896 1.0250366688941313 1.0412745774935774 0.9587853558149237 0.9418377782134019 0.9651764816906235 0.9857703131508955 1.0064460772809485 0.9422892803942255 1.0 20.317641362815657 3.713615772953881 24.91771412175681 0.9731807992718569 1.0064472469553214 0.19411067363933499 0.030503386449908052 1173.0980934008205 1171822.5787534977 0.008388804156897757 0.01300343439908122 5171.490996908879 -3.713615772953881 0.03326644768346454 RTAS(ph)PPPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTASPPPPPKR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RT(0.201)AS(0.799)PPPPPKR 78.486 0.015523 1120300000.0 57555.0 59049.0 57368.0 60045.0 58720.0 71236.0 62399.0 60610.0 83248.0 67526.0 True False 57245.13027496162 61014.41026912575 65444.91574840507 67646.69084344752 66197.64393929216 66311.62299150675 59380.52198267163 65133.02597134384 62732.64586604895 63216.432868082906 0.9055419244299672 0.9651669273470044 1.035251639158009 1.070080796627824 1.0471587993177391 1.0489617965297526 0.9393209848867006 1.030317957156178 0.9923471322236183 1.0 15.948012009718788 4.502851669740067 3.0322522611909553 1.021199203380711 0.9078867988493686 0.5181293060548652 0.035022158150176806 0.2237062615058375 3.8088236678548175 0.009141029497503624 0.04602085533616183 31831.101669073272 -4.502851669740067 -0.11331240453134228 RTDALT(ph)SSPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 RT(0.079)DALT(0.307)S(0.307)S(0.307)PGR 101.32 0.0065208 68449000.0 86316.0 111340.0 96406.0 95710.0 96365.0 116030.0 108950.0 94863.0 106720.0 109770.0 True False 85851.28424660924 115045.88459354868 109979.12682402619 107826.87618663268 108636.511549896 108009.1192052407 103679.67227058244 101942.15876455346 80420.28597473502 102764.38462117496 0.8354186575736987 1.1195112491321537 1.0702066404566841 1.0492630942531287 1.0571416541865912 1.051036500665086 1.0089066620968106 0.9919989220034499 0.7825696253735376 1.0 16.64898082619413 1.4452719002616654 5.044510883874124 0.8876246598628053 1.0329340346022675 0.27555026172095987 0.085919291323619 0.20688919593314808 10.294352364228688 0.05280914344187724 0.020347239848066676 27.878660313805657 -1.4452719002616654 0.14530937473946226 RTDALTS(ph)SPGR ddPTM_BT-474_Trastuzumab_2h_R1 4 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 RTDALT(0.103)S(0.589)S(0.308)PGR;RTDALT(0.011)S(0.495)S(0.495)PGR;RTDALT(0.138)S(0.431)S(0.431)PGR;RTDALT(0.143)S(0.56)S(0.298)PGR 173.25 7.5935e-06 14946090000.0 2265331.0 3133420.0 2854630.0 3017540.0 2751590.0 3034360.0 3263280.0 2607320.0 2979990.0 2965730.0 True False 2253134.7095979364 3237713.9905076083 3256537.0911112367 3399560.2546046525 3101988.6765483106 2824601.835315127 3105422.679459808 2801891.4581026887 2245611.3943201895 2776454.572310803 0.8115150638761163 1.1661325284400046 1.172912074120798 1.2244249513419005 1.1172481291370708 1.017341275266842 1.1184849593541917 1.0091616430701098 0.8088053796072736 1.0 21.40481236041388 1.499721457786223 4.117672146878075 0.9029731267279829 1.0982833348266843 0.28451408244428855 0.11604799798901225 0.21759488641442631 7.831248912755059 0.07434964884306225 0.0295969765179938 31.602501294257674 -1.499721457786223 0.19531020809870137 RTDALTSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 5 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 RTDALT(0.001)S(0.248)S(0.751)PGR;RTDALT(0.099)S(0.253)S(0.648)PGR;RTDALT(0.097)S(0.252)S(0.651)PGR;RTDALT(0.067)S(0.218)S(0.715)PGR;RT(0.012)DALT(0.158)S(0.207)S(0.623)PGR 191.69 1.8215e-06 19605709000.0 4936214.0 6373800.0 5865610.0 5754164.0 5862273.0 6363230.0 6816250.0 5395520.0 6406350.0 5702730.0 True False 4909637.972288936 6585948.079956538 6691436.903203908 6482640.572412277 6608798.718135656 5923354.887532226 6486521.946896357 5798161.10029542 4827590.883191945 5338776.889047214 0.9196184958321298 1.2336061642635718 1.25336515128245 1.214255756915364 1.237886290340014 1.109496615167475 1.2149827725904419 1.086046714593123 0.9042503523786517 1.0 22.348077828423833 1.4524203043338826 3.7362912622011235 0.9552030841042464 1.1760858009916728 0.4442562564380572 0.0956977650295803 0.18500810860529968 4.859562419013277 0.06644671690425934 0.02404513676505567 28.341335051152043 -1.4524203043338826 0.22088271688742644 RTDDIPVWDQEFLK ddPTM_BT-474_Trastuzumab_2h_R1 5 RTDDIPVWDQEFLK 14 1 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2;E5RGM3 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ;;;; 191.78 7.2082e-07 3111756000.0 3997710.0 4178092.0 4127291.0 3982243.0 3712023.0 4511803.0 4594759.0 4101322.0 5900220.0 4613439.0 False True 3976186.7735473346 4317157.266510049 4708377.697743525 4486394.555491424 4184727.1261659274 4199912.678251855 4372492.953486089 4407383.473731126 4446189.839897412 4319005.373256162 0.9206255676754643 0.9995720989935422 1.0901532391921545 1.0387564190755023 0.968909914323862 0.9724258979297076 1.0123842356300663 1.0204626048909808 1.029447628713035 1.0 22.042267680720972 4.707936145001776 4.427997100653353 1.0163988807978424 0.9162690766289012 0.4325977651934194 0.03267642638587853 0.17953440764821285 8.059216249575073 0.008465488725712771 0.05186772226921551 51042.99451431365 -4.707936145001776 -0.10012980416894113 RTDEAAFQK ddPTM_BT-474_Trastuzumab_2h_R1 4 RTDEAAFQK 9 1 P26447 P26447 S100A4 Protein S100-A4 0 ;;; 107.45 0.0044428 1643120000.0 631390.0 617900.0 569750.0 546410.0 474501.0 727160.0 687730.0 582760.0 893460.0 718260.0 False True 627990.6663940235 638466.4279715621 649965.8476442235 615585.44997532 534925.8897622292 676893.1407505209 654461.8725162701 626248.51039532 673278.7547506262 672420.0318666758 0.9339261720842641 0.9495053652687048 0.9666069076494966 0.915477559861535 0.7955234294214062 1.0066522540552925 0.9732932415761726 0.9313352974580769 1.0012770632093848 1.0 19.35900317855318 RTDEEGKDVPDHAVLEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTDEEGKDVPDHAVLEMK 18 2 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 ; 132.79 8.437e-06 711350000.0 1196140.0 875680.0 796980.0 691760.0 759850.0 1094900.0 904060.0 1012020.0 1961950.0 1069880.0 False True 1189700.1151436477 904826.479440261 909187.8565256569 779336.7450722493 856612.3935161983 1019212.1401173662 860327.1639554177 1087542.0713334328 1478453.7112830891 1001599.342429649 1.1878004155411181 0.9033816628167514 0.907736075704859 0.7780923090282369 0.8552445645963127 1.017584673772841 0.8589534033323768 1.0858054965324824 1.4760929332248776 1.0 19.933874089549 1.5108748082352284 4.845606241671049 1.252515495172121 0.9246348531343623 0.4038661948563732 0.14992298862543194 0.1365056555756812 7.0406875475648905 0.0859556629189583 0.03653527937977477 32.42461351641223 -1.5108748082352284 -0.3278806420377586 RTDKDTEITCSER ddPTM_BT-474_Trastuzumab_2h_R1 1 RTDKDTEITCSER 13 2 P16422;B5MCA4 P16422 EPCAM Epithelial cell adhesion molecule 0 85.45700000000002 0.0052174 528210000.0 39234.0 45236.0 40429.0 40208.0 49416.0 50218.0 40855.0 27096.0 51585.0 45272.0 False True 39022.76850330718 46741.652914260536 46121.05178483244 45298.328677380865 55708.83468842066 46746.547860456594 38878.68756874387 29118.041110700084 38872.56795358607 42382.70220069079 0.9207239387079751 1.102847399699274 1.0882046068332265 1.0687928406000162 1.3144238520854075 1.102962893661242 0.9173244165661103 0.6870265367418101 0.9171800271138091 1.0 15.37118795232929 2.1362985082303036 4.106189285264874 0.8273104495291574 1.107751587291021 0.44478000015562513 0.11759326333057779 0.16798654138132563 5.196681518850261 0.046778883315470116 0.03357259108666299 136.8669244306115 -2.1362985082303036 0.28044113776186363 RTDLCDHALHISHDEL ddPTM_BT-474_Trastuzumab_2h_R1 5 RTDLCDHALHISHDEL 16 1 Q9Y2B0;H0YI18 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ;;;; 159.22 3.7457e-09 3594940000.0 745602.0 1690430.0 1617260.0 2030070.0 1968960.0 1636020.0 1604363.0 27465.78 1486505.0 497703.0 False True 741587.7616761697 1746694.9406634865 1844956.1505240817 2287076.6538522355 2219695.3850597525 1522925.7881768313 1526753.832428164 29515.415972004885 1120175.7608964918 465939.1684350244 1.59159781343771 3.748761767614874 3.959650262331106 4.908530573924416 4.763916698643658 3.268507760985122 3.2767235207036927 0.06334607170103329 2.4041244797231536 1.0 18.8297820878447 1.885365324836217 5.47396507085344 1.1282694089511593 3.781031428777334 0.5639176607690579 1.0067863427031574 0.16114578732366125 6.5227954765145775 0.4616553803064305 0.2753298348893708 76.80072589108151 -1.885365324836217 2.6527620198261745 RTEEGPTLSYGR ddPTM_BT-474_Trastuzumab_2h_R1 6 RTEEGPTLSYGR 12 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;;; 236.12 7.335e-16 8544510000.0 2133080.0 2923630.0 2789660.0 2758420.0 2427210.0 2607980.0 2720460.0 2269040.0 3024820.0 2592720.0 False True 2121595.73428747 3020941.2571783466 3182419.8798405984 3107635.689172823 2736300.8062992087 2427696.4811245664 2588860.956633584 2438367.2867516596 2279393.6415114114 2427250.3898607288 0.8740737021404715 1.2445939940096922 1.3111213796213252 1.2803111298917675 1.1273253133378682 1.0001837846089967 1.066581745108764 1.0045800371224036 0.9390846741782577 1.0 21.210891510766476 2.877969008621355 3.7166311527801437 1.0079466443290297 1.1930522375913466 0.3373094555887818 0.11614104328848195 0.27583045510318155 6.8117266435429755 0.03721903363656855 0.04005058997240088 755.0383459902781 -2.877969008621355 0.1851055932623169 RTEEPDRDER ddPTM_BT-474_Trastuzumab_2h_R1 2 RTEEPDRDER 10 2 O95232;J3KPP4;H0YA81 O95232 LUC7L3 Luc7-like protein 3 0 ; 157.68 4.9181e-06 205266000.0 76433.0 105621.0 103589.0 113117.0 108028.0 91916.0 106195.0 98911.0 102386.0 92816.0 False True 76021.49322050471 109136.53113575719 118173.43078827098 127437.6006018526 121784.72546787893 85562.06326699043 101057.94214570458 106292.24107988107 77154.34220211046 86892.40341622454 0.8748922832339333 1.2559962303376595 1.3599972626169259 1.466613830341554 1.401557796537359 0.9846897991431814 1.1630239028103009 1.2232627583188038 0.8879296597716644 1.0 16.406942434232427 2.736488189962004 24.99418824277509 1.0877450625534097 1.2866544179696002 0.27196861919524173 0.1742793972180038 292.43284291096944 3526816.7853838326 0.057757680599201125 0.056917986939435755 545.1150718366316 -2.736488189962004 0.19890935541619048 RTETSLPETEVDHNMDVNT(ph)EEDDDGELALWSPEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTETSLPETEVDHNMDVNTEEDDDGELALWSPEVK 35 1 A0A2R8Y549;Q8NI35-3;Q8NI35;A0A0X1KG69;A0A087WUZ6;Q8NI35-4;Q8NI35-2;Q8NI35-5 A0A2R8Y549 INADL InaD-like protein 1 RT(0.001)ET(0.001)S(0.007)LPET(0.059)EVDHNMDVNT(0.932)EEDDDGELALWSPEVK 105.36 1.6346e-05 75460000.0 32663.0 36389.0 30185.0 32380.0 35245.0 45113.0 53755.0 38210.0 50307.0 49603.0 True False 32487.146037200444 37600.185867384986 34434.785627276666 36479.30468000381 39733.24183651827 41994.44449457923 51154.66528595836 41061.42422644857 37909.51392926347 46437.29407273517 0.6995917114876574 0.8096980372820919 0.7415329922829083 0.7855605157110561 0.8556321514833255 0.9043258297695584 1.1015858332708692 0.8842337833495139 0.8163592363905926 1.0 15.502996287550024 3.027569808579487 1.9645005419105745 0.9440414590741464 0.7573288723064627 0.5744722391577775 0.07445536973548499 0.25181470268512773 1.968948629295791 0.025641759711037868 0.030731929179397263 1065.5401250298364 -3.027569808579487 -0.18671258676768365 RTETTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTETTVK 7 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;E9PKL1 O60716-13 CTNND1 Catenin delta-1 0 ; 80.438 0.047962 236190000.0 282450.0 346780.0 355770.0 266680.0 286740.0 212530.0 313970.0 271060.0 376300.0 336890.0 False True 280929.3205831453 358322.36266706354 405859.3235917253 300441.6606566837 323254.639358866 197838.30134180633 298782.07161812537 291287.8736147902 283565.90716166404 315389.39177396003 0.890738014373317 1.1361268705063918 1.2868515371075169 0.9526054727674882 1.024938212222886 0.6272826750101896 0.9473434408734421 0.9235817095064396 0.8990977964309468 1.0 18.26677460985857 3.3044453597036467 2.4639007834141533 0.8860879691957916 1.103999508306775 0.28895127660925446 0.13691465861093677 0.3294023884589618 4.080777085181838 0.04079465977923987 0.05718864912698173 2015.7903402010681 -3.3044453597036467 0.2179115391109835 RTETVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTETVQK 7 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 ; 118.06 0.0081639 119058000.0 223580.0 238680.0 217470.0 190924.0 172256.0 145840.0 204630.0 179529.0 330260.0 230770.0 False True 222376.2701220731 246624.31951489302 248087.88571687433 215094.95882412113 194191.78055869738 135758.42407043264 194731.26513748788 192926.36560979023 248871.84825727146 216042.06102786286 1.0293193328376613 1.1415569650721207 1.1483314153574868 0.9956161212347462 0.898860988618566 0.6283888582831282 0.9013581161511576 0.8930037266442695 1.1519601649475772 1.0 17.720952691126215 3.4714599077049972 3.3172176700467926 0.8932957266291015 1.1083420178785475 0.3164996174493996 0.12566352818294768 0.26866154002358483 6.180504362989508 0.03668469151736706 0.054974521799247375 2961.146591801892 -3.4714599077049972 0.21504629124944596 RTFEDISEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTFEDISEK 9 1 A0A2R8Y430;P48637;A0A2R8Y5T7;P48637-2;A0A2R8Y6Q7;A0A2R8Y7I7 A0A2R8Y430 GSS Glutathione synthetase 0 ; 138.23 0.0022901 377800000.0 633410.0 921470.0 923220.0 784240.0 611500.0 591500.0 826360.0 580770.0 1426970.0 764620.0 False True 629999.7909384673 952140.5719096228 1053201.3512279063 883524.7035900609 689370.9003555368 550610.99724123 786385.8097982425 624110.0064903043 1075312.3639183622 715821.2969758841 0.8801076380376146 1.330137250640784 1.471318827306962 1.2342811080400513 0.963048882825795 0.7692017540793844 1.0985783925687471 0.8718796285147833 1.502207839388424 1.0 19.449239941611655 3.26743651060931 8.857575345609705 1.009623581258231 1.2540737602238468 0.1398103908326611 0.22864608412463652 0.4218751074767228 116.98211115029133 0.06276201153803185 0.08401235714155801 1851.128258493428 -3.26743651060931 0.24445017896561572 RTGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTGGPAYGPSSDVSTASETESEKR 24 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 RTGGPAYGPSSDVST(0.01)AS(0.983)ET(0.006)ESEKR 140.35 1.5492e-07 367660000.0 90126.0 64081.0 62741.0 52623.0 67327.0 92301.0 85032.0 84783.0 154170.0 88219.0 True False 89640.77162993992 66213.89734721745 71574.38744545174 59285.06640444228 75900.69437160638 85920.44912318308 80918.6773062154 91109.93797935058 116176.86927215988 82588.78789191422 1.0853866961609218 0.80172985991601 0.8666356447696353 0.7178343201020211 0.9190193524929716 1.0403403575268482 0.9797779985839659 1.1031756283744978 1.4066905718994582 1.0 16.333658316755034 2.083209550522488 1.203189951318883 1.1895337434188207 0.8693664390711114 0.44825314549439166 0.13452854003428896 0.4081851678490533 1.1045765184337164 0.09408834507642196 0.04670490098998587 121.11823976696107 -2.083209550522488 -0.32016730434770924 RTHEHVSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTHEHVSEK 9 1 P20810-6;P20810-10;P20810-7;P20810-9;H0YA91;P20810-5;F8W7E0;E9PSG1 P20810-6;P20810-5 CAST Calpastatin 0 72.643 0.029971 24947000.0 35414.0 50491.0 56565.0 55744.0 59043.0 63836.0 71489.0 25049.0 79996.0 58222.0 False True 35223.334958865285 52171.56241254594 64528.86032820615 62801.184684438915 66561.7760747211 59423.16757378048 68030.80395549949 26918.283576244685 60282.05769148152 54506.22211363799 0.6462259461943531 0.9571670974329389 1.1838806254756078 1.152183773689306 1.2211775737446806 1.090208883857174 1.2481291367738643 0.4938570778235879 1.105966536550666 1.0 15.734133308523617 1.762010743541561 24.999999999998334 0.8164465481178851 1.0808287131539451 0.1402151832533476 0.22118679786535 19.109022160156385 20387.12970617373 0.10149032610056179 0.056283870501147415 57.81103484755961 -1.762010743541561 0.26438216503606005 RTHS(ph)DAS(ph)DDEAFTTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTHSDASDDEAFTTSK 16 1 Q13017-2;Q13017;H0YK04 Q13017-2 ARHGAP5 Rho GTPase-activating protein 5 2 RT(0.013)HS(0.987)DAS(1)DDEAFTTSK;RT(0.032)HS(0.968)DAS(1)DDEAFTTSK 189.07 3.7673e-09 1050630000.0 949000.0 974450.0 754420.0 902770.0 862390.0 1242340.0 1105670.0 964800.0 1478620.0 1221900.0 True False 943890.6894438114 1006883.9791825357 860635.7784638075 1017060.5894369072 972210.2547140018 1156459.9599537954 1052184.518030426 1036798.2751551314 1114233.913492903 1143917.2958787777 0.8251389264279789 0.8802069719638511 0.7523583930100923 0.889103253444195 0.8498955809275813 1.0109646598755044 0.91980820800696 0.9063577226172145 0.9740511114808599 1.0 20.125551319745817 2.858378628454994 6.52518322517485 0.9486298904434011 0.8381667403613671 0.6295291187131333 0.046612026395943265 0.17740578961816586 8.816824295247528 0.014169282434335021 0.015064988210194346 721.7364322886368 -2.858378628454994 -0.110463150082034 RTIQEVLEEQS(ph)EDEDREAK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTIQEVLEEQSEDEDREAK 19 2 P18858;P18858-3;P18858-2;M0R0Q7 P18858 LIG1 DNA ligase 1;DNA ligase 1 RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK 182.17 1.557e-14 397190000.0 145465.0 134568.0 117971.0 111341.0 119499.0 157650.0 172619.0 147850.0 259300.0 200233.0 True False 144681.8326026809 139047.01453192602 134580.29137768614 125436.75918395021 134716.48932393512 146752.02656818234 164268.759501383 158883.31776708778 195398.9894419867 187453.95851190397 0.7718259659664274 0.7417662216138052 0.7179378469574428 0.6691603643888083 0.718664414416088 0.7828697122918483 0.8763152339135659 0.8475858233583162 1.0423839058569584 1.0 17.516176766134798 1.734367112898324 0.9724546405263527 1.018747090002195 0.7218478024834669 0.8639304736563248 0.04348138143846693 0.18201210997434322 0.32248537772477076 0.038865507240890836 0.01593073672855889 54.245924215977944 -1.734367112898324 -0.2968992875187282 RTLEGELHDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 RTLEGELHDLR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;; 169.89 1.0617e-05 3089870000.0 1446175.0 2025653.0 1920241.0 1891745.0 1814091.0 1823229.0 1858933.0 1602309.0 2211946.0 1915875.0 False True 1438388.954485148 2093075.6355719059 2190594.2417660193 2131239.7230350147 2045104.7358902353 1697193.470649417 1769009.308976324 1721881.4339402416 1666841.5468578641 1793602.2172368898 0.801955383786846 1.1669675781268636 1.2213378310496907 1.1882454774828881 1.1402220159165473 0.946248535120572 0.9862885382142023 0.9600129936240062 0.9293262078063746 1.0 20.774428536029465 2.737579321468147 24.97521265175056 0.9636163356995678 1.118485322390525 0.2804648022542757 0.11035740735162301 109.03364357488867 2775014.9173975945 0.035122522555525414 0.03483999457181333 546.486353455883 -2.737579321468147 0.15486898669095706 RTLLEQLDDDQ ddPTM_BT-474_Trastuzumab_2h_R1 3 RTLLEQLDDDQ 11 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;; 155.97 0.00064135 251260000.0 547810.0 702820.0 600200.0 610370.0 640970.0 604450.0 672830.0 597050.0 787450.0 666160.0 False True 544860.6518274125 726212.9388363376 684702.9429680778 687642.7794173546 722593.7301731628 562665.7942222509 640282.6424397988 641604.902758469 593393.4987894032 623645.0984717308 0.8736710240529703 1.1644650789623037 1.0979047933607944 1.1026187507966516 1.1586617644296568 0.9022211440466504 1.0266779038412055 1.0287981166383724 0.9514922834213555 1.0 19.250365733756915 2.7447062186746676 24.9993169348363 0.991087805050762 1.086497377829887 0.25068062510063893 0.083189538808094 724.4144704902131 2946803.9716958147 0.02483805871859074 0.025751749922514944 555.528339382407 -2.7447062186746676 0.09540957277912498 RTLS(ph)MDK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTLSMDK 7 1 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 1 RT(0.01)LS(0.99)MDK 84.054 0.013369 250510000.0 446370.0 393940.0 358180.0 335450.0 253120.0 342990.0 397470.0 353000.0 512670.0 438380.0 True False 443966.7935163692 407052.0547582409 408608.63064362947 377917.9356055369 285353.33164021873 319279.9086116137 378242.8576171489 379342.6524976793 386329.3479260439 410402.21308400005 1.081784599016037 0.9918368902044067 0.9956296959831368 0.9208477039284036 0.6953016395694079 0.7779682916725995 0.9216394199602699 0.9243192175965105 0.9413432374619555 1.0 18.64667898510084 3.720936285326015 3.2430372027801324 0.8713846983852447 1.0252989988807428 0.37058018173623386 0.08483307627737864 0.27804304400580765 6.061483258466971 0.024837306673771417 0.04417979394799465 5259.401008689532 -3.720936285326015 0.15391430049549815 RTLS(ph)MDKGF ddPTM_BT-474_Trastuzumab_2h_R1 3 RTLSMDKGF 9 2 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 1 RTLS(1)MDKGF;RTLS(1)MDKGF;RTLS(1)MDKGF 155.88 5.69e-05 1014640000.0 1418240.0 1417860.0 1397360.0 1388190.0 964900.0 1223790.0 1546670.0 1151880.0 2297450.0 1727260.0 True False 1410604.3534212771 1465052.6129855313 1594096.1419291452 1563934.7116656716 1087774.295589629 1139192.2777917918 1471851.6632468272 1237839.134728124 1731274.2317527647 1617024.788018315 0.8723455347583082 0.9060174116322437 0.9858204733414945 0.9671680503935217 0.67270106410843 0.7044989577357603 0.9102220783211372 0.765504118366121 1.070654107828776 1.0 20.62491036395331 3.586974677556034 0.005629328950660119 1.7305939699555826 6.082239526150027e-07 0.018891824458066364 0.12441642271393724 125277.5700803511 168.89794082961993 25281.22728504684 26646.96592033072 3863.4444977981443 -3.586974677556034 -1.73059336173163 RTMIIS(ph)PERLDPFADGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTMIISPERLDPFADGGK 18 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 RT(0.138)MIIS(0.862)PERLDPFADGGK;RT(0.004)MIIS(0.996)PERLDPFADGGK 151.84 2.3385e-08 110552000.0 89321.0 119952.0 90976.0 103154.0 107941.0 115059.0 122104.0 118009.0 184948.0 127274.0 True False 88840.10566049612 123944.52980748467 103784.63002243232 116213.2858233821 121686.64653356848 107105.24214975272 116197.36303742275 126815.43081755991 139370.04357623018 119151.26435524663 0.7456077460967723 1.0402284061203666 0.8710325533181162 0.9753424477049188 1.0212786846370565 0.8989014319681998 0.9752088126482914 1.0643229973579025 1.169690009840783 1.0 16.862434734981917 7.123370249485758 0.27466035797435223 1.0619066524495158 4.475600558270619e-14 0.41922971650772833 0.08421341863827528 33.4633973683666 0.723179475309077 0.09554044489193976 15.40567983019083 13285265.851015322 -7.123370249485758 -1.061906652449471 RTNPPGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RTNPPGGK 8 1 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BTV5;Q9H910-2;H3BU16;H3BMT0 A6NGP5;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein 0 ;; 107.57 0.0063765 431305000.0 515945.0 524935.0 468385.0 447337.0 463301.0 389818.0 544984.0 507307.0 686340.0 569109.0 False True 513167.2094468789 542407.1441450919 534329.5367245979 503969.8183335043 522299.63614982937 362870.79919286864 518621.04187894566 545164.8243927495 517200.70348481706 532787.9763812721 0.9631734051739331 1.0180544009817072 1.002893384257273 0.9459106448994918 0.9803142324969866 0.681079182112008 0.9734098081594312 1.0232303440770973 0.9707439477100728 1.0 19.023201999393205 -1.1484503559161423 5.182905421906418 1.0000017978888478 0.9534130685217401 0.023608213439395898 0.09340366871009438 2.0020381550078085e-06 3.2879136974169536e-07 0.09331329130645766 0.021993305018231924 0.07104763797226597 1.1484503559161423 -0.04658872936710767 RTNS(ph)SSSSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTNSSSSSPVVLK 13 1 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 RT(0.139)NS(0.807)S(0.047)S(0.005)S(0.001)SPVVLK 115.2 0.00041844 339470000.0 469230.0 444080.0 408430.0 474550.0 393850.0 461900.0 501230.0 459840.0 615170.0 473320.0 True False 466703.7178163541 458860.9343479717 465933.3938628 534627.9813432917 444004.46296815784 429969.94019564526 476983.59001545666 494155.59582020715 463569.596355676 443112.3123703611 1.0532402390712061 1.0355409261669253 1.0515017995558755 1.2065292848293507 1.002013373523801 0.9703407650660557 1.076439486557948 1.1151926543787463 1.0461672659824814 1.0 18.757312888710178 -1.4531365220661778 2.329133606212491 0.996545699098235 1.0649851331522335 0.08294811786439082 0.06095125556592189 2691129.565700348 2373412.4983874536 60270.050592294014 0.015992252827781484 0.03522601193729164 1.4531365220661778 0.06843943405399855 RTNSSSSS(ph)PVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTNSSSSSPVVLK 13 1 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 RT(0.178)NS(0.178)S(0.074)S(0.134)S(0.183)S(0.253)PVVLK 71.692 0.025467 367960000.0 152620.0 148560.0 153750.0 160720.0 141140.0 154270.0 135650.0 124870.0 183880.0 145660.0 True False 151798.31087767603 153504.7297935836 175396.6635810432 181067.1355210072 159113.34239767876 143605.6780125183 129088.09126667755 134188.43347701215 138565.23786576348 136363.85409419995 1.1131858356893753 1.1256995544254913 1.2862401458665096 1.3278235403637557 1.1668293145173463 1.0531066239394766 0.9466444911237526 0.9840469409460587 1.0161434552153594 1.0 17.057101754944092 2.6835784019429214 2.8199713238165693 0.9853483881313679 1.2146335674028579 0.7284246877227556 0.06340759377048853 0.15070701537139636 2.375225162652825 0.02410267508928998 0.023228005135578964 482.5900928080411 -2.6835784019429214 0.22928517927148995 RTPAPPEPGS(ph)PAPGEGPSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RTPAPPEPGSPAPGEGPSGR 20 1 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR 150.17 5.5442e-08 1199790000.0 305433.0 459630.0 410800.0 501820.0 427110.0 430270.0 391290.0 382000.0 532890.0 446910.0 True False 303788.5826647963 474928.5066977978 468637.0692623897 565350.3605472366 481499.92682069255 400526.44764663425 372361.8078270417 410506.7797566956 401566.3998601631 418387.821181099 0.7260932734782009 1.1351394152848087 1.1201020812208113 1.3512591235358282 1.1508459435110456 0.9573090500482483 0.8899919858467034 0.9811633106285088 0.959794667843224 1.0 18.67448133133391 2.728572357648489 22.56765730961628 0.9529262516781634 1.1142677828313405 0.17788603482163168 0.14686468336713862 296.27520704226305 669406.9605620115 0.04839015561235752 0.04623148981777613 535.2693273739113 -2.728572357648489 0.16134153115317718 RTPDGTENGDFLALDLGGTNFR ddPTM_BT-474_Trastuzumab_2h_R1 2 RTPDGTENGDFLALDLGGTNFR 22 1 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 138.93 1.1789e-06 317430000.0 109370.0 161333.0 141255.0 150593.0 160342.0 159722.0 148754.0 133595.0 185417.0 136608.0 False True 108781.16407214937 166702.87137714188 161142.47618952993 169658.05835935185 180760.60327850803 148680.79408514593 141558.2007245364 143564.5372816645 139723.4648105084 127889.56048400706 0.8505867379671913 1.3034908459005028 1.260012745212939 1.3265981814095613 1.413411717065934 1.162571780858836 1.1068784675527807 1.1225665076831477 1.0925322151527856 1.0 16.96453897749416 2.484999575014066 15.81799124738086 1.0996977158771792 1.2464194025580704 0.18820264981217238 0.14318031353335445 5.181940663564906 10407.887872165302 0.04805622662733857 0.04227554435066869 305.49181237741965 -2.484999575014066 0.14672168668089114 RTPS(ph)DDEEDNLFAPPK ddPTM_BT-474_Trastuzumab_2h_R1 11 RTPSDDEEDNLFAPPK 16 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 RT(0.01)PS(0.99)DDEEDNLFAPPK;RT(0.168)PS(0.832)DDEEDNLFAPPK;RT(0.023)PS(0.977)DDEEDNLFAPPK;RT(0.048)PS(0.952)DDEEDNLFAPPK;RT(0.015)PS(0.985)DDEEDNLFAPPK;RT(0.002)PS(0.998)DDEEDNLFAPPK;RT(0.038)PS(0.962)DDEEDNLFAPPK;RT(0.018)PS(0.982)DDEEDNLFAPPK;RT(0.047)PS(0.953)DDEEDNLFAPPK;RT(0.003)PS(0.997)DDEEDNLFAPPK;RT(0.055)PS(0.945)DDEEDNLFAPPK 278.72 2.3338999999999996e-35 9303820000.0 5787780.0 5361120.0 4874040.0 4665910.0 4776270.0 5963790.0 5936190.0 5550010.0 7391960.0 5929670.0 True False 5756619.235562804 5539561.63833452 5560262.466084855 5256613.727593472 5384499.673329757 5551527.234551609 5649033.811252029 5964179.928579736 5570310.505189304 5551233.383954102 1.0369982375812863 0.9978974500237516 1.0016265001858597 0.946927171678238 0.9699645647927015 1.0000529342899465 1.0176177833885744 1.074388251414408 1.0034365554311488 1.0 22.404376917223765 2.17853809634605 3.460581119861512 1.0362736154423597 0.9893766437174945 0.19077700961645117 0.02944129691625121 0.2783120904139805 6.763664748475674 0.01226850465139574 0.008804427684569087 150.8474928276076 -2.17853809634605 -0.04689697172486529 RTPS(ph)EADR ddPTM_BT-474_Trastuzumab_2h_R1 2 RTPSEADR 8 1 P49757-3;P49757;G3V3Z8;P49757-8;P49757-7;P49757-6;P49757-5;P49757-4;P49757-2;P49757-9 P49757-3 NUMB Protein numb homolog 1 RT(0.031)PS(0.969)EADR;RT(0.295)PS(0.705)EADR 95.094 0.0060603 95885000.0 78002.0 90681.0 86481.0 91735.0 88619.0 71389.0 79249.0 70316.0 85738.0 80600.0 True False 77582.04589883682 93699.26226717803 98656.77309367283 103348.64159419845 99904.10436403494 66454.04646163009 75415.4231094208 75563.33697741316 64609.01873033957 75456.03899486826 1.0281754374108234 1.241772872195829 1.3074735224357914 1.369653681413454 1.3240040915854248 0.8806988459353082 0.9994617278353264 1.0014219933086097 0.8562471551777799 1.0 16.203348748549214 2.740224050079268 24.984509561634006 0.9564575924480978 1.2628966114563966 0.71323813797193 0.09706038181916964 84.70224458282144 1272220.735317185 0.03161689112959101 0.03196626910530736 549.8244520438706 -2.740224050079268 0.30643901900829884 RTPS(ph)PGPVESK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTPSPGPVESK 11 1 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 RT(0.188)PS(0.812)PGPVESK 62.861 0.038438 0.0 645950.0 607770.0 556220.0 558120.0 532820.0 741870.0 699670.0 606230.0 931600.0 725410.0 True False 642472.2769717914 627999.2570452762 634530.9412490913 628777.9347746664 600671.4687284343 690586.273074136 665824.2891010408 651469.9609735643 702019.6628004424 679113.7127452533 0.9460452129212022 0.9247335832855565 0.9343515369231165 0.9258801920416108 0.8844932114539056 1.0168934305309576 0.9804312247053718 0.9592943696278171 1.0337291820578824 1.0 19.37329363812355 2.731374416443902 24.99971357177636 0.991107077220053 0.9239709175409102 0.7025595598626664 0.024175269783286903 354.1877458241523 1232163.5035098686 0.007905600936858005 0.007597813622714962 538.7340388362353 -2.731374416443902 -0.06713615967914277 RTQAPTKAS(ph)E ddPTM_BT-474_Trastuzumab_2h_R1 6 RTQAPTKASE 10 2 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 RTQAPTKAS(1)E;RTQAPTKAS(1)E;RTQAPTKAS(1)E;RTQAPTKAS(1)E;RTQAPTKAS(1)E;RTQAPTKAS(1)E 154.7 1.1048e-05 4162370000.0 2714765.0 2294791.0 2033283.0 2063536.0 2123054.0 2506867.0 2572697.0 2375238.0 3713760.0 2730947.0 True False 2700149.006878747 2371171.7312045484 2319551.572787345 2324779.446020889 2393412.342573058 2333573.1848201673 2448245.817453059 2552490.3207741766 2798553.609834444 2556655.6243786444 1.05612542461012 0.9274505758986703 0.907260074712282 0.9093048840263306 0.9361496791945688 0.9127444316585681 0.9575970240607071 0.9983707998978235 1.094615005301932 1.0 21.28582641529267 1.5979031704587516 2.846963058984552 1.0474380731162023 0.9383153046256147 0.4430805442122566 0.046400918169304715 0.18829408303291698 3.5290167916862063 0.030798585665831782 0.01219049079986837 39.618969064397795 -1.5979031704587516 -0.10912276849058755 RTQS(ph)LSALPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTQSLSALPK 10 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 RT(0.257)QS(0.74)LS(0.002)ALPK 130.2 0.00017331 489770000.0 1008700.0 679700.0 603690.0 704100.0 535830.0 716290.0 602810.0 620860.0 1136000.0 759220.0 True False 1003269.2712771051 702323.403612674 688684.304632454 793238.9878070012 604064.7743867667 666774.5582652927 573649.7773421734 667191.7258631992 856048.0216201189 710765.9295990561 1.4115325868856017 0.9881219320808686 0.9689326344341541 1.1160340623733445 0.8498786298430488 0.9381070905317886 0.8070867685874727 0.9386940173673811 1.2044021610644964 1.0 19.4390150022067 4.73979079066959 4.758229459660207 0.9649977751147081 1.4373966640926483 0.5800808726053048 0.10998784596586027 0.12573953454595244 8.066591990235532 0.0264423820544146 0.19764407177905638 54927.62115238754 -4.73979079066959 0.47239888897794025 RTS(ph)EEDTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSEEDTPK 9 1 A0A1B0GW41;Q8WYH8-2;Q8WYH8 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 RT(0.483)S(0.502)EEDT(0.015)PK 114.93 0.0016499000000000002 220070000.0 518580.0 496500.0 430450.0 415660.0 450800.0 475910.0 556130.0 503290.0 672720.0 494790.0 True False 515788.022899654 513025.70235941187 491053.61846152786 468282.5133814205 508206.70789906214 443011.4618716382 529227.8672770914 540848.0554548358 506937.16998616717 463212.07858896855 1.1135029649288113 1.1075395614082106 1.0601053840335293 1.0109462490872376 1.0971361313529555 0.9563901339126016 1.1425174164050718 1.167603524291424 1.094395404218287 1.0 18.821313347567955 RTS(ph)FSFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTSFSFQK 8 1 H0Y7F8;Q9BPZ7-4;Q9BPZ7-3;Q9BPZ7-2;Q9BPZ7 H0Y7F8 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 1 RT(0.349)S(0.651)FSFQK;RT(0.055)S(0.945)FSFQK 163.45 0.00020572 1000770000.0 1060310.0 754480.0 659800.0 863740.0 603730.0 714160.0 692280.0 729740.0 1064370.0 943520.0 True False 1054601.4087715163 779592.4107072082 752694.1049155912 973089.3954387436 680611.4369119356 664791.800151812 658791.7716335834 784196.9043446366 802070.2753272943 883303.7458118881 1.1939283782864296 0.882587008606701 0.8521350763929488 1.1016475363685105 0.7705293226016515 0.7526196999660282 0.7458269873270551 0.8877998175178601 0.9080345001708011 1.0 19.7525501039558 4.738419775709642 5.104305422375057 0.8672457433395422 1.2090224329729893 0.44277645272224975 0.10588666994034147 0.1499756522120731 12.818234658612978 0.025847254776317836 0.1808485163988952 54754.49473344967 -4.738419775709642 0.3417766896334471 RTS(ph)FSTSDVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSFSTSDVSK 11 1 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 RT(0.206)S(0.79)FS(0.004)TSDVSK 112.67 0.00091581 473570000.0 955580.0 701150.0 754330.0 664440.0 666080.0 1028100.0 871490.0 826960.0 1366700.0 1065500.0 True False 950435.2634549182 724487.353895874 860533.1072461024 748558.0358734322 750901.3398345326 957029.8668870811 829332.6992849002 888671.9544177926 1029895.0978417395 997498.8777795554 0.9528183786738674 0.7263039287909693 0.8626908023813115 0.7504349654404939 0.7527841449867574 0.9594295173719305 0.8314121627194256 0.8909002047160065 1.0324774501343785 1.0 19.927955692691313 1.4050883318485243 2.4850028563701154 1.0199795637670452 0.8285885928088854 0.47070751286974 0.07577008550545503 0.23297487279665097 2.5374893430955403 0.06199619978832308 0.019532671279866153 25.414895706086917 -1.4050883318485243 -0.19139097095815982 RTS(ph)LGEVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSLGEVSK 9 1 Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q9ULJ8 PPP1R9A Neurabin-1 1 RT(0.093)S(0.906)LGEVS(0.002)K 63.908 0.077309 98721000.0 235780.0 188280.0 166340.0 168640.0 152370.0 248800.0 190120.0 197190.0 266690.0 206870.0 True False 234510.58667762048 194546.78598233673 189759.2261468011 189989.80670895134 171773.416332254 231601.04161220303 180923.16927107077 211905.3191105311 200967.82296291325 193667.3794896824 1.2108935810230963 1.0045408085500593 0.9798202807660259 0.9810108816961248 0.8869506923927021 1.1958701678231853 0.9341953701640777 1.094171458657137 1.0376957828028017 1.0 17.56322144741949 2.759531251834615 24.928970123066204 1.0512511541419487 1.0086122895452867 0.03843556979423146 0.09828324795590591 2992.612464998945 3557478.081278872 0.02917925227342804 0.03092329156731434 574.8191813504636 -2.759531251834615 -0.042638864596661996 RTS(ph)MGGTQQQFVEGVR ddPTM_BT-474_Trastuzumab_2h_R1 3 RTSMGGTQQQFVEGVR 16 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 RT(0.013)S(0.971)MGGT(0.016)QQQFVEGVR;RT(0.01)S(0.977)MGGT(0.013)QQQFVEGVR;RT(0.277)S(0.717)MGGT(0.006)QQQFVEGVR 148.89 9.4124e-07 374851000.0 357797.0 322178.0 381160.0 361250.0 392470.0 482350.0 358780.0 327443.0 473730.0 435520.0 True False 355870.66070698394 332901.49996928626 434824.0148978888 406984.2129602032 442448.72814805905 449006.27982976724 341424.44072730234 351878.4593818636 356985.5891567772 407724.74073256843 0.8728208645557857 0.8164858952909124 1.066464630320521 0.9981837556116052 1.0851652694734717 1.1012485507330934 0.8373895587347905 0.86302945155998 0.8755553771776835 1.0 18.63723597663788 -1.153368068658791 6.516335626113076 1.0000001664078657 0.9452843369112575 0.023750574188034168 0.10319098499103344 2.7210653385908315e-07 3.543516721838182e-08 0.10912597896180216 0.025721161720965374 0.0702476711906312 1.153368068658791 -0.05471582949660825 RTS(ph)PQVLGSILK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 RT(0.312)S(0.688)PQVLGSILK 169.02 2.7542e-05 264470000.0 553180.0 603920.0 628190.0 583790.0 484650.0 590930.0 622330.0 547630.0 872870.0 657430.0 True False 550201.7403440754 624021.1121226504 716633.6916746375 657697.7541426626 546367.304754393 550080.3999995947 592225.5203685323 588496.9314087937 657762.8843587615 615472.2545458588 0.8939505173146353 1.0138899154489094 1.164363927669531 1.0686066663199316 0.8877204467284124 0.8937533673317002 0.9622294360052351 0.9561713417009032 1.0687124878506633 1.0 19.23133429600224 4.74474910197385 23.376826184839487 0.9968988153428067 0.8939503995918651 0.13785425298619747 0.08003854862324448 665.0744492309261 2512114.1112109246 0.021059305989234625 0.18803510675652502 55558.31963174564 -4.74474910197385 -0.1029484157509416 RTS(ph)SEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSEELR 8 1 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.229)S(0.764)S(0.007)EELR 89.9 0.008316500000000001 213260000.0 227820.0 281870.0 299240.0 306420.0 273110.0 241610.0 279910.0 265050.0 235380.0 261620.0 True False 226593.44243318168 291251.87255598715 341370.3909592931 345212.7405820493 307888.9396502061 224908.0693887636 266369.6839399608 284829.3768966289 177373.75293040797 244923.18761584905 0.9251612501001059 1.18915597739485 1.3937855140719349 1.4094734922505576 1.257083670383696 0.918280019046305 1.087564172804045 1.1629334881243294 0.7242015533809346 1.0 17.90196983908927 2.7524693021775515 24.0353940078368 1.0120898745801716 1.250910845206398 0.36332321969908754 0.16607112010066344 589.7398522999462 1019119.4888133301 0.05317016609177106 0.05609273212816166 565.5477802999885 -2.7524693021775515 0.23882097062622631 RTS(ph)SEELRDATSLLAAGEGGLLDEVEPLRPDELER ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.139)S(0.667)S(0.192)EELRDAT(0.001)S(0.001)LLAAGEGGLLDEVEPLRPDELER 168.48 4.6498000000000004e-14 28198000.0 3912.4 4749.4 6296.6 6684.2 5421.3 6977.8 6141.8 4182.5 6601.7 5529.0 True False 3891.3360731085045 4907.480907927074 7183.106548971682 7530.419034653534 6111.6704204374055 6495.441109974392 5844.697670045557 4494.619388304661 4974.799493247829 5176.134486384951 0.7517841901797728 0.9480976432964542 1.3877356872905393 1.4548345013950426 1.180740267957342 1.2548826014972525 1.129162637759734 0.8683351253965843 0.961103214441838 1.0 12.337659386598393 1.8586698025592228 5.198357002088338 0.9353800066074772 1.1782996429580015 0.20560618627578675 0.1925977570160605 0.3563507425320938 13.124939657809922 0.09634481033280337 0.0564103747845547 72.22204850036815 -1.8586698025592228 0.24291963635052427 RTS(ph)SPHKEESPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSPHKEESPK 12 2 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 RT(0.105)S(0.55)S(0.346)PHKEESPK 109.35 0.00083859 262610000.0 180500.0 158560.0 130980.0 120160.0 118710.0 179690.0 194460.0 158190.0 263310.0 184440.0 True False 179528.20805543542 163837.57374845582 149420.8455014312 135372.2436797176 133827.01485070444 167268.45324476156 185053.22689066036 169994.94107254368 198420.7786732334 172668.88129297152 1.0397253211528341 0.9488540872079236 0.865360592960032 0.7839990776915279 0.775049990760274 0.9687237908314995 1.071723089331169 0.9845140583502657 1.1491403499427786 1.0 17.397648575545812 2.486782366196786 6.500897588328424 1.0415486392678799 0.8787865987440902 0.4796853350779564 0.082602749524366 0.1431254421749016 28.589316940515978 0.029791822022346166 0.02642425126634089 306.7484424299576 -2.486782366196786 -0.16276204052378973 RTS(ph)SPHKEESPKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RTSSPHKEESPKK 13 3 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 RT(0.019)S(0.832)S(0.148)PHKEESPKK;RT(0.135)S(0.729)S(0.135)PHKEESPKK 77.222 0.018936 233920000.0 284490.0 209538.0 195186.0 183720.0 180034.0 263870.0 273830.0 261210.0 446010.0 268960.0 True False 282958.3374498101 216512.34566160408 222666.49221287438 206978.93316276398 202960.26275487975 245629.28798316693 260583.7967678167 280702.8165975039 336096.81172780716 251794.74253175897 1.1237658682016385 0.859876355973935 0.8843174800791933 0.8220145150038534 0.8060544104858753 0.9755139663100217 1.0349056304658513 1.1148080923973174 1.3348047236745428 1.0 17.941888634370052 2.0285724594598213 1.757881303660382 1.1683525112714646 0.8944282565072514 0.4763068057160318 0.11316274546856411 0.2895038908007626 1.6786570566118795 0.0672716954138922 0.034447744606765966 106.80029676390177 -2.0285724594598213 -0.2739242547642131 RTSEEDT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSEEDTPK 9 1 A0A1B0GW41;Q8WYH8-2;Q8WYH8 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 RT(0.014)S(0.042)EEDT(0.945)PK 130.36 0.00070289 435500000.0 632760.0 626030.0 542820.0 526320.0 582760.0 524690.0 633570.0 591560.0 884350.0 602550.0 True False 629353.2904662447 646867.0301068734 619244.3377239786 592952.0580351949 656971.0317108639 488419.4152874065 602921.798627563 635705.2110808144 666413.79218288 564094.743130991 1.1156872105792692 1.1467347249443547 1.0977665458941903 1.0511568584100468 1.164646612489891 0.8658464224935852 1.0688307344987185 1.126947589605873 1.1813862835947915 1.0 19.10557796678787 4.019030034881831 4.739533758787835 1.0703901237030227 1.130425480985221 0.08624212256515218 0.08489474048126847 0.5198110490068764 30.501168768513892 0.022027391432468037 0.04750806952793513 10447.924723455402 -4.019030034881831 0.06003535728219833 RTSS(ph)EDNLYLAVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 RT(0.115)S(0.115)S(0.769)EDNLYLAVLR 197.69 1.4146e-08 102470000.0 28433.0 42209.0 45754.0 49919.0 41510.0 44299.0 47473.0 35418.0 54144.0 48374.0 True False 28279.91988720328 43613.90104912068 52195.76549910273 56238.74028168964 46796.05245095401 41236.7143986293 45176.549625528794 38061.07100895984 40800.9366924293 45286.729904935004 0.6244637214161394 0.9630613899628899 1.1525620332638509 1.2418370767716036 1.0333281415811508 0.9105694865845378 0.9975670515482682 0.8404464417911578 0.9009468508341805 1.0 15.466800747591467 2.737734502897632 23.123993315733216 0.9192253364018993 1.0224009820646751 0.04249033743275488 0.15696046240055017 73.00662339564224 2043517.956252238 0.052540446932037035 0.05225511266604511 546.6816580014727 -2.737734502897632 0.10317564566277582 RTSS(ph)EELRDATSLLAAGEGGLLDEVEPLRPDELER ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.076)S(0.384)S(0.535)EELRDAT(0.004)S(0.001)LLAAGEGGLLDEVEPLRPDELER 192.15 4.6521e-20 33042000.0 5167.9 8474.3 3126.3 6937.2 5281.3 7705.7 4936.1 4972.4 7735.7 7004.5 True False 5140.0766006076665 8756.361952677471 3566.455865713268 7815.448808712863 5953.842250282418 7173.023096266685 4697.321985266837 5343.465737335587 5829.340388069318 6557.466813145845 0.7838509514532782 1.335326918486796 0.5438770743854234 1.1918396282303898 0.9079485142565522 1.0938710481747045 0.7163317968838288 0.8148673702203825 0.8889622401722503 1.0 12.67892288579801 2.239000823634605 24.999996743609536 0.8325584798971495 0.9795061067010075 0.06670984745701591 0.21517135835820872 27.450977101810835 1559096.5208570822 0.07127992208253724 0.05626196494712915 173.3807285897055 -2.239000823634605 0.14694762680385798 RTSS(ph)KSEAGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSKSEAGAR 11 2 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 RT(0.08)S(0.287)S(0.619)KS(0.014)EAGAR 81.52600000000002 0.016878999999999998 41184000.0 41745.0 52133.0 44167.0 54437.0 50510.0 36459.0 61663.0 54223.0 102160.0 66650.0 True False 41520.24955830553 53868.21538993603 50385.32969355403 61328.71861844866 56942.14910377468 33938.675145254456 58680.12511446471 58269.39559881496 76984.03687386551 62396.339938064106 0.6654276452676453 0.8633233206211571 0.8075045706778241 0.9828896803774839 0.9125879684657247 0.5439209283580204 0.9404417818851525 0.9338591920079665 1.2337909074519668 1.0 15.929173785110219 1.5716098364751618 2.463985541391748 1.1096304944225186 0.8150814439143134 0.4340545018293136 0.1349089174108931 0.2378399457977383 3.179198783123076 0.0978073164805521 0.03601738128090404 37.2914986137757 -1.5716098364751618 -0.29454905050820523 RTSS(ph)PHKEESPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSPHKEESPK 12 2 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 RT(0.276)S(0.214)S(0.51)PHKEESPK 95.428 0.003158 318910000.0 155470.0 119130.0 101860.0 100300.0 112550.0 144330.0 148690.0 140950.0 220270.0 130860.0 True False 154632.96679434078 123095.17003439424 116201.00261700855 112997.96971600929 126882.57536388517 134352.80681627497 141497.29664903993 151468.4047295976 165987.40996678107 122508.40276511751 1.2622233520652044 1.004789608353655 0.9485145507920628 0.9223691368555155 1.0357050822640645 1.0966823808311863 1.1550007465229088 1.2363919642312569 1.3549063265890817 1.0 16.902521180495793 2.290494035348861 1.975731466462579 1.218614877302904 1.0233279186802289 0.25936144677584316 0.11881455619217361 0.37824697038045063 3.005802440187622 0.05517581914129067 0.03786290205113948 195.2063923985271 -2.290494035348861 -0.1952869586226751 RTSS(ph)PPRK ddPTM_BT-474_Trastuzumab_2h_R1 1 RTSSPPRK 8 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RT(0.005)S(0.167)S(0.828)PPRK 76.22800000000002 0.018964 676520000.0 11307.0 17474.0 13785.0 13386.0 16496.0 8225.7 13875.0 13060.0 12780.0 18162.0 True False 11246.124368325796 18055.611526743935 15725.808178632054 15080.666227502501 18596.667820547755 7657.076720215023 13203.813242352742 14034.603517336252 9630.54024322633 17002.88561072951 0.6614244561657837 1.0619145443965177 0.9248905473261805 0.8869474613171536 1.0937359837798653 0.4503398361618746 0.7765630813878205 0.8254248036862548 0.5664062244322263 1.0 14.053491990795193 2.7604614361729083 24.99153326872471 0.726922637396997 0.9311383985278031 0.24894723424508847 0.1752939244261853 1110.5699593073944 1267295.4754566876 0.050710053215293864 0.053747893168050086 576.0516649209012 -2.7604614361729083 0.20421576113080608 RTSSEELRDAT(ph)SLLAAGEGGLLDEVEPLRPDELER ddPTM_BT-474_Trastuzumab_2h_R1 2 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.179)S(0.179)S(0.179)EELRDAT(0.232)S(0.232)LLAAGEGGLLDEVEPLRPDELER;RT(0.017)S(0.017)S(0.048)EELRDAT(0.459)S(0.459)LLAAGEGGLLDEVEPLRPDELER 146.02 1.0243e-10 82377000.0 9887.6 10852.2 9458.4 14637.8 12413.0 10213.3 10911.0 8721.7 17081.7 11571.2 True False 9834.366260215638 11213.408916706567 10790.060506113417 16490.943979152547 13993.721972384763 9507.278610522157 10383.193245932316 9372.557541895221 12872.143918053143 10832.716109397277 0.9078393784993978 1.0351428767692936 0.9960623353503323 1.5223277165776377 1.2918017818490917 0.8776449520609779 0.9585032175748607 0.8652084525472441 1.1882656009868737 1.0 13.403107397774349 2.7286852556175067 24.635938125211965 0.9594245902983034 1.1562808469849446 0.18326331636282012 0.18000106093515997 947.4368958535019 2363554.2638007794 0.06191364198390428 0.059037554690528606 535.4084925667701 -2.7286852556175067 0.1968562566866412 RTVQSLEIDLDSMR ddPTM_BT-474_Trastuzumab_2h_R1 4 RTVQSLEIDLDSMR 14 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;; 163.7 6.7953999999999985e-06 1100310000.0 538184.0 714910.0 655500.0 722350.0 677050.0 731810.0 800980.0 562460.0 916590.0 746070.0 False True 535286.4771418637 738705.3471777784 747788.7022918611 813799.4359357855 763268.304310248 681221.6971954426 762233.5373592585 604433.621314008 690708.6761767459 698455.1738573379 0.7663863010501486 1.0576274252478537 1.0706323473302808 1.1651419681544333 1.0927949750804602 0.9753262953630647 1.0913134670471316 0.8653864183952138 0.9889090982921486 1.0 19.413808002342247 1.746901973234667 24.99999999999992 0.9406602555056346 1.0391999652790558 0.10061219377907582 0.10620718027290406 3.690949489695757 11089.882541800105 0.04907864701751339 0.027216831255019485 55.83441538795674 -1.746901973234667 0.09853970977342119 RVAIFIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVAIFIEK 8 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 113.62 0.004510800000000001 1087990000.0 1417340.0 1635080.0 1322510.0 1303480.0 1181650.0 1547270.0 1367220.0 1476440.0 2593100.0 1820860.0 False True 1409709.1989212774 1689502.6493732668 1508707.91253701 1468500.4343511858 1332126.1233117266 1440310.8667818042 1301082.3453123993 1586619.4500104075 1954065.2507597941 1704651.1558833248 0.8269781145871966 0.9911134272500416 0.8850537585534444 0.8614668340105227 0.7814655325308707 0.8449299798441497 0.7632543120754802 0.9307590262878418 1.1463138625258649 1.0 20.70104510202262 1.4291483332845267 5.1860684494698415 1.068998742734193 0.8546062561199467 0.6319369090098104 0.06718657913998194 0.12502399486055982 6.11215253482791 0.045997800337430686 0.017307205234819135 26.862617817292477 -1.4291483332845267 -0.21439248661424626 RVATPVDWK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVATPVDWK 9 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ; 128.91 0.00064815 1029620000.0 1621450.0 1671580.0 1474390.0 1509160.0 1403950.0 1759050.0 1731360.0 1656850.0 2619100.0 2017300.0 False True 1612720.2933600321 1727217.5298085513 1681971.296372383 1700219.5012623398 1582734.7106363967 1637451.0138583016 1647607.5023625114 1780492.5603138243 1973657.899141949 1888554.186902577 0.8539444113091926 0.9145713381099039 0.890613204554638 0.900275731061164 0.8380668776214699 0.867039466071074 0.8724173835142941 0.9427807645985605 1.045062891406336 1.0 20.848850747888655 1.483084776121896 3.0497500076364967 1.0212054775028219 0.8779926628338359 0.855218570086823 0.023890276132548613 0.08232465609099095 1.5228088223342569 0.018016692524627384 0.006380381098793085 30.414786772497433 -1.483084776121896 -0.14321281466898594 RVDAENR ddPTM_BT-474_Trastuzumab_2h_R1 8 RVDAENR 7 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;; 179.21 0.0011295 2131418000.0 835454.4 1041716.0 1045252.6 1041740.1 825066.7 681917.4 951374.3 762279.5 1146903.2 883811.9 False True 830956.4063381095 1076388.8873293814 1192415.080581533 1173624.2898479823 930134.0536915333 634778.0551988956 905352.6905062401 819164.6670668703 864264.2740755131 827406.267872564 1.0042906835534056 1.3009194263139972 1.4411482325937457 1.4184377559353252 1.1241564027344197 0.7671902907274849 1.09420574349055 0.9900392332935976 1.0445464430644438 1.0 19.65823636093712 3.014445409876986 7.891282399590901 0.9847138423960498 1.299508318357687 0.53915691858767 0.13584540317788557 0.1206352106785649 43.29683754566265 0.04037149074115759 0.047394713696442596 1033.821143147622 -3.014445409876986 0.31479447596163723 RVDFCKDPSAIGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVDFCKDPSAIGK 13 2 P55212;P55212-2 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 0 72.265 0.022509 314580000.0 514400.0 535780.0 501930.0 483360.0 472910.0 594520.0 604060.0 542100.0 839870.0 656800.0 False True 511630.5275552129 553613.1134141511 572597.3811462309 544553.3264399822 533132.2853428241 553422.2317495451 574839.3100667096 582554.2547280232 632895.2921814162 614882.4616852292 0.8320785832026657 0.9003559995789193 0.9312306283332489 0.8856218226610438 0.8670474742142593 0.9000455635582156 0.9348767380536892 0.9474237614964607 1.029294754068637 1.0 19.22995113179905 1.6452011915782443 1.3362276694954125 1.014687460890741 0.887570864037849 0.7676861520103999 0.027208576166440616 0.1967722119780622 0.6738312216408826 0.023145561109585957 0.008469401981553545 44.17750569907603 -1.6452011915782443 -0.127116596852892 RVDIIPGFEFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 RVDIIPGFEFDR 12 1 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 ;;; 159.0 0.00011533 1983140000.0 711186.0 907826.0 821192.0 856445.0 899431.0 833234.0 808375.0 790398.0 967701.0 804135.0 False True 707357.053596193 938042.4396175938 936808.6956711804 964870.8491867154 1013968.2065047927 775634.4948018573 769270.8129576149 849381.5123197191 729224.0550790585 752814.4158453894 0.9396167750080223 1.2460473921241246 1.2444085500397473 1.2816848732940278 1.346903280758957 1.030313020680989 1.0218598326039565 1.1282747705699652 0.9686637765300502 1.0 19.5219347293225 2.711323354201057 24.639781287085924 1.0444894662578104 1.2193401973663678 0.41391142994113084 0.10733498835779451 651.2912892203058 589180.0025174824 0.035039669808252134 0.03304401207258176 514.4265255895168 -2.711323354201057 0.17485073110855742 RVDPVYIHLAER ddPTM_BT-474_Trastuzumab_2h_R1 3 RVDPVYIHLAER 12 1 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;; 113.72 0.00073672 1002819000.0 187874.0 277736.0 307768.0 251645.0 202416.0 246833.0 267487.0 215229.0 325996.0 250739.0 False True 186862.50725876368 286980.2748650426 351099.0592325883 283503.23119825654 228192.47778637212 229770.0156923831 254547.63191042945 231290.48089071692 245658.65392259863 234736.6223515422 0.7960517851318397 1.2225628535936763 1.4957148812799281 1.2077503218636303 0.9721213311343914 0.9788417903887145 1.0843967565027763 0.9853191145620885 1.0465288776060668 1.0 17.840683415416912 3.2456432294722024 24.663394243398802 1.0122890124938089 1.2060370027349105 0.2015311195103493 0.16194432861584113 206.1929486178793 718008.8719339523 0.04631940883895499 0.06138612353941737 1760.5291871570894 -3.2456432294722024 0.19374799024110168 RVEDVLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RVEDVLGK 8 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 94.692 0.016322 1288390000.0 1648340.0 1471430.0 1231660.0 1251450.0 1112210.0 1343620.0 1397920.0 1216920.0 1957780.0 1437370.0 False True 1639465.5205877905 1520405.658051781 1405067.0222193673 1409883.4416859392 1253843.3509148527 1250738.7119412706 1330297.2690270098 1307732.749794549 1475311.3519079527 1345635.81600563 1.2183575236978763 1.1298790058702033 1.04416589206889 1.0477451810631953 0.9317850610105988 0.9294778699142753 0.9886012643271113 0.9718325970814362 1.0963674824643492 1.0 20.359856579915455 4.424269838180103 1.162357421216846 0.9847092738516475 1.2622723832840304 0.7164617713577783 0.046354752076463605 0.4996470530170651 0.8306116072425093 0.014149339124209378 0.14826194197353126 26562.554482662887 -4.424269838180103 0.2775631094323828 RVEEDIQQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVEEDIQQQK 10 1 P15924 P15924 DSP Desmoplakin 0 ; 168.69 7.7955e-06 1152830000.0 1700250.0 1421330.0 1354390.0 1214430.0 1262080.0 1722250.0 1781600.0 1443140.0 2352660.0 1801450.0 False True 1691096.0429155317 1468638.1098378715 1545076.3394310838 1368176.7134816882 1422798.407065767 1603194.9112404187 1695417.2016270724 1550834.434916436 1772878.467028861 1686479.91870106 1.0027371355942543 0.8708304756863207 0.9161546024343494 0.8112617875316703 0.8436497768450261 0.9506160692830614 1.0052993710905824 0.9195688710666063 1.0512301079720805 1.0 20.685583709285385 2.5416794679957744 5.511052834578317 0.9805700564251805 0.8855233361329378 0.42873242766687814 0.05647468265720856 0.22697602373075113 13.62200392772003 0.018759681827695242 0.017410889523911347 348.0803187591684 -2.5416794679957744 -0.0950467202922427 RVEEELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVEEELEK 8 1 Q9NWB6;Q9NWB6-2;Q9NWB6-3 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 0 114.4 0.0042704 479650000.0 465310.0 496460.0 430920.0 504780.0 398670.0 429460.0 470690.0 457780.0 594640.0 463280.0 False True 462804.8226608016 512984.3709835921 491589.7903762151 568685.0962437411 449438.26139777916 399772.4410400988 447920.9264895862 491941.8681597391 448098.9397677703 433713.07376603666 1.0670760248063407 1.182773593909041 1.1334447129011371 1.3112011849347989 1.0362571215462721 0.9217440405214833 1.0327586452494486 1.1342564887151951 1.0331690854435576 1.0 18.726381406623638 3.087349970278229 24.999999999902517 1.035423049499955 1.171700437030374 0.47947566893558236 0.0748002553139411 21.652248413200542 6192.707475902801 0.022730009120101077 0.02716756197419397 1222.784627546081 -3.087349970278229 0.13627738753041907 RVEEELEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVEEELEKR 9 2 Q9NWB6;Q9NWB6-2;Q9NWB6-3 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 0 128.03 0.0002411 501770000.0 169430.0 180330.0 151900.0 159170.0 152000.0 197230.0 190700.0 158800.0 238080.0 182870.0 False True 168517.80770544283 186332.17503821285 173286.19966153125 179320.9056799323 171356.29902541585 183595.95432948045 181475.11245525538 170650.46237006123 179408.37410855424 171199.0800371161 0.9843382783885756 1.0883947215009326 1.0121911848122236 1.0474408252722818 1.0009183401468376 1.0724120380184092 1.0600238763894725 0.9967954403321797 1.0479517417363362 1.0 17.385315423667365 0.42053452876799036 0.747689950491601 0.9999706415883527 1.0362818114562145 0.07790062588979074 0.0332312179645979 4.859944158046586 4.057398509231237 0.03519562167803187 0.010928056551943417 2.633507313474414 -0.42053452876799036 0.03631116986786176 RVEEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVEEFK 6 1 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 81.78399999999998 0.097755 5869500000.0 262110.0 281190.0 200460.0 218970.0 241510.0 288220.0 226830.0 218990.0 354850.0 290660.0 False True 260698.82888315845 290549.2391670554 228683.0255704449 246691.57954850025 272264.86695808015 268296.0297969013 215857.36632525208 235332.14580868828 267401.97224638966 272109.82995345426 0.9580647230853523 1.0677645832080205 0.840407072429402 0.9065882683866954 1.000569758926579 0.985984335232559 0.7932729455682492 0.8648425007245898 0.9826986856451679 1.0 18.05382954924911 RVEELVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 RVEELVAK 8 1 Q9NWB6;Q9NWB6-2;Q9NWB6-3 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 0 ;; 131.11 0.002329 371350000.0 458780.0 442183.0 426984.0 418824.0 417183.0 452130.0 445885.0 414407.0 590136.0 515446.0 False True 456309.9794552503 456900.7938497321 487099.6357885405 471847.07545700774 470308.782212631 420875.31729953847 424315.83910388814 445332.1546561077 444704.8902172624 482549.79498447775 0.9456225744949877 0.9468469339302679 1.0094287488075901 0.9778204868415408 0.9746326433062924 0.8721904385288918 0.8793203178493468 0.9228729538066279 0.9215730580334559 1.0 18.88031829820708 2.7644657740814957 24.149140986349995 0.9118907314433607 0.9720639196311247 0.32357790077199533 0.03658613687183673 500.81239676438327 466863.0814769179 0.010923024002279803 0.011581231056804081 581.3876124558461 -2.7644657740814957 0.06017318818776396 RVEGPGSLGLEESGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVEGPGSLGLEESGSR 16 1 Q12972;A0A0A0MT09;Q12972-2;Q12972-3 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 ; 199.76 2.669e-12 0.0 190818.0 401610.0 382070.0 605510.0 450700.0 312010.0 373450.0 251439.0 228320.0 324090.0 False True 189790.65708987278 414977.34607162856 435862.1349880272 682167.5039156602 508093.97349180875 290441.48309253773 355384.7967824598 270202.6549613713 172053.59533125462 303406.2987325911 0.6255330159020392 1.367728184303027 1.4365625789864596 2.2483630259663543 1.6746322525743618 0.957269128247466 1.1713164765102 0.8905637624864078 0.5670732481493242 1.0 18.210891510766476 2.7246235845113485 22.03455768131008 0.930113735754067 1.506172782786831 0.32484323550301086 0.3969794397404828 206.250711567296 326082.0562619898 0.136093187434306 0.12915727225128792 530.4245107980813 -2.7246235845113485 0.576059047032764 RVEHHDHAVVSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 RVEHHDHAVVSGR 13 1 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 Apoptosis-inducing factor 1, mitochondrial 0 ;; 91.812 0.0041287 533583000.0 64452.9 77611.8 89168.4 78533.9 89160.0 95179.1 70565.3 19375.84 87029.3 53440.0 False True 64105.8927477904 80195.06184567622 101722.5356543732 88476.28368773774 100513.99750727674 88599.59284450165 67151.78685337612 20821.76356932193 65582.09514787307 50029.4134477142 1.2813640682553185 1.6029582663304291 2.033254612522762 1.7684853287397506 2.009098060130648 1.770950061949001 1.342246135337096 0.41619043947182754 1.3108707583872234 1.0 15.610488917607938 2.0061106313413135 4.6664550754407035 0.8462718534806842 1.755798254409647 0.6289511305692828 0.2864345358915007 0.10962663430252874 6.287440711364002 0.12080423146151273 0.07976765582657688 101.41697004735641 -2.0061106313413135 0.9095264009289629 RVEHNQSYSQAGITETEWTSGSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVEHNQSYSQAGITETEWTSGSSK 24 1 P42167 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 0 116.48 0.00057006 208850000.0 35630.0 40022.0 37354.0 33394.0 52110.0 73358.0 45087.0 40730.0 58548.0 54193.0 False True 35438.17203886517 41354.1080761901 42613.118513211586 37621.676976036026 58745.89961983166 68286.9341261574 42905.96956093392 43769.47942274925 44119.62990300586 50734.35634303841 0.6985044177805533 0.8151105297675579 0.8399262666325087 0.7415424120424136 1.1579115978652317 1.345970246758191 0.8456985099175566 0.8627187290364658 0.869620373316509 1.0 15.630675423414175 3.2592842359225513 24.997265443252477 1.0007760794376377 0.7814490526282787 0.38658249696832747 0.1473726595968772 316.01087842372874 381176.48545011226 0.046206731145391436 0.06249760502346678 1816.7042656548597 -3.2592842359225513 -0.219327026809359 RVEIMEEESEQ ddPTM_BT-474_Trastuzumab_2h_R1 2 RVEIMEEESEQ 11 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ; 164.48 0.000466 1136900000.0 352180.0 385770.0 364560.0 404340.0 362840.0 381810.0 387760.0 373000.0 459940.0 393400.0 False True 350283.9020108763 398610.12124711036 415886.87918767566 455529.4025420861 409045.523278828 355416.3733840645 369002.56741295115 400835.1540556222 346593.9498802442 368292.87519331474 0.9511014890717457 1.082318307238179 1.129228685103884 1.236867268482947 1.1106528277641061 0.9650373312204549 1.0019269778685345 1.0883597838954289 0.9410824189805983 1.0 18.490493962299777 2.757739806022483 23.08301260761663 1.0118338641447557 1.1099400274900493 0.31204762471349845 0.07467651213842123 419.0360356883922 504327.310816979 0.02419025024477393 0.025606279643769908 572.4529609101635 -2.757739806022483 0.09810616334529354 RVEISAPSNFEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVEISAPSNFEHR 13 1 O96013;O96013-4;O96013-2;O96013-3;M0R2X4;M0R0L9;M0R3G6 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 ; 109.44 0.00073811 342290000.0 178332.0 233410.0 218030.0 225450.0 207560.0 240740.0 223100.0 189465.0 267350.0 212989.0 False True 177371.880326548 241178.9107506752 248726.72884926715 253991.946884091 233991.5356954955 224098.2104410037 212307.80067523604 203603.84038377585 201465.1748064598 199395.85967094294 0.889546456076167 1.2095482381062754 1.2474016725308814 1.2738075269127773 1.173502479347589 1.1238859764231128 1.0647553114974468 1.021103651398666 1.0103779242905635 1.0 17.605275927832835 2.189849549042662 1.7822580340778742 1.0117180645758541 1.17198217849576 0.30034489249847696 0.09885756546864996 0.43625493274488497 2.733810915590897 0.05402762578014157 0.0324138143887416 154.82801612894795 -2.189849549042662 0.16026411391990592 RVELLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVELLK 6 1 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RG31;A0A3B3IRR8 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 ; 107.43 0.050146 2291400000.0 1168080.0 1234000.0 1050220.0 1011700.0 1057080.0 1344330.0 1270010.0 1168980.0 1701450.0 1418890.0 False True 1161791.1870658882 1275072.9440312472 1198081.847324118 1139781.1162680632 1191692.8721959635 1251399.63131243 1208574.7643906593 1256215.2235601628 1282150.4457619272 1328335.2254271552 0.8746219815802061 0.9599029820361947 0.9019423895341243 0.8580523157484902 0.8971326284091794 0.942081191071339 0.9098416884954743 0.9457064749270647 0.9652310811449148 1.0 20.3411878478093 1.3133416349577833 0.835055571466735 0.9999692765356899 0.9024907371831979 0.5865000589945559 0.027082735234728393 0.40522870025708674 0.6161855877047291 0.0258159378828256 0.00988327034500131 20.575084853513665 -1.3133416349577833 -0.09747853935249196 RVELSGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVELSGPK 8 1 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;K7ENL0;K7EPY1;K7EJV0 Q9UHD8 SEPT9 Septin-9 0 82.645 0.031646 344850000.0 496780.0 357640.0 376590.0 310240.0 249870.0 334280.0 296270.0 227770.0 491800.0 304260.0 False True 494105.39167744725 369543.8312020542 429610.59862104116 349516.3521903765 281689.4634044781 311172.01041047904 281938.28823869204 244767.35399262462 370602.4797823716 284841.8663099084 1.7346656166753935 1.2973648712159116 1.508242465149502 1.2270540026939094 0.9889327964801338 1.0924377600865858 0.9898063507698786 0.8593096133077479 1.3010814898226917 1.0 18.119801684921676 3.797870243716471 0.9688235638513076 1.0034874939058724 1.6202109541613203 0.6810805648261062 0.14482645055930302 0.3878965929049224 0.648226386393203 0.051717703799912404 0.18362251151593081 6278.707387793804 -3.797870243716471 0.6167234602554479 RVES(ph)EES(ph)GDEEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVESEESGDEEGK 13 1 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C118;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 RVES(1)EES(1)GDEEGK;RVES(1)EES(1)GDEEGK 178.22 9.8816e-06 574140000.0 1997000.0 1539860.0 1311130.0 1251330.0 1356620.0 1872060.0 1772610.0 1718730.0 2459500.0 1742890.0 True False 1986248.373887557 1591113.3092349719 1495725.7074537417 1409748.249698244 1529377.5156832864 1742648.8985552285 1686862.0822722078 1846990.3601340996 1853389.1806115126 1631657.2680367995 1.2173196006275262 0.9751516696575563 0.916691107105716 0.8639977753382271 0.9373154188951853 1.0680238630334258 1.033833584611694 1.1319720117181151 1.1358936811782168 1.0 20.637906618281374 2.623534115896004 4.697988273959529 1.085202064120254 0.9718172330426648 0.1810201397108876 0.09535195840989913 0.35257430573470255 12.175706146934996 0.03276904626149708 0.030747362947377992 420.27554102217545 -2.623534115896004 -0.11338483107758923 RVES(ph)EES(ph)GDEEGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVESEESGDEEGKK 14 2 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C118;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK 106.89 0.0045021 4897030000.0 6426600.0 3577700.0 2825900.0 2724740.0 2966500.0 4827800.0 4849600.0 4794500.0 7552500.0 4514900.0 True False 6391999.899662381 3696781.581734677 3223762.156836875 3069691.804626113 3344266.1911769416 4494065.549418778 4615006.320728933 5152289.935977698 5691287.573315091 4226755.216599644 1.5122711328442249 0.8746145429043032 0.7627037743222658 0.7262525619109852 0.7912135952522344 1.0632424446462696 1.0918555923476523 1.2189705038378427 1.3464909325630736 1.0 22.011119133544433 2.2915148975283426 2.1942905478055765 1.1990948868069864 0.9119100715349876 0.18290397149261817 0.2247868162770217 0.4623037644938724 4.556251666278775 0.10190626285509183 0.07226719659951601 195.66578856800987 -2.2915148975283426 -0.2871848152719988 RVES(ph)EES(ph)GDEEGKKHSSGIVADLSEQSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVESEESGDEEGKKHSSGIVADLSEQSLK 29 3 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C118;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 RVES(0.66)EES(0.696)GDEEGKKHS(0.328)S(0.316)GIVADLSEQSLK;RVES(0.999)EES(0.997)GDEEGKKHS(0.002)S(0.002)GIVADLSEQSLK 123.62 3.5904e-05 317156000.0 224794.0 250516.0 262223.0 274636.0 345109.0 463156.0 511493.0 514465.0 755625.0 507648.0 True False 223583.73408096132 258854.27361988035 299141.7191168252 309404.8894409365 389056.5855286983 431139.1158719509 486750.1294969898 552856.9907003364 569411.3436062514 475249.47002068086 0.4704555148083214 0.5446703046478223 0.6294414575650296 0.6510367900620121 0.8186365478992921 0.9071848430534589 1.0241992052633082 1.1632984896885386 1.1981314646841648 1.0 18.85832549247537 2.9027413062800402 0.8022607698039097 1.148818731695726 0.5072382494464468 0.9371160481550669 0.06148130153048378 0.13552122067970065 0.19272832253320663 0.037330261806761085 0.04298651610433869 799.35796416163 -2.9027413062800402 -0.6415804822492791 RVES(ph)GGAK ddPTM_BT-474_Trastuzumab_2h_R1 3 RVESGGAK 8 1 O15234 O15234 CASC3 Protein CASC3 1 RVES(1)GGAK;RVES(1)GGAK;RVES(1)GGAK 99.752 0.0040367 1281650000.0 2340860.0 1947090.0 1694560.0 1627450.0 1663210.0 1314050.0 1843900.0 2120180.0 2869850.0 2372390.0 True False 2328257.069853993 2011897.7136092405 1933139.318620437 1833485.003133792 1875009.9348819868 1223212.8164409783 1754703.512617962 2278398.597655896 2162613.9215198024 2220982.039094733 1.0483007196235523 0.9058595153832424 0.8703984474401153 0.8255289646021253 0.8442256181622416 0.5507531330327898 0.7900574978684541 1.0258518788312965 0.9737196805073123 1.0 21.082766295296086 -0.47375181510391284 6.892223784179502 0.9999999680112409 0.8680713330232234 0.07743087941879456 0.13383861090523091 0.0 0.0 0.13899551881259778 0.03276155796897676 0.3359295319892102 0.47375181510391284 -0.13192863498801755 RVESEESGDEEGKKHS(ph)S(ph)GIVADLSEQSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVESEESGDEEGKKHSSGIVADLSEQSLK 29 3 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C118;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 RVES(0.444)EES(0.499)GDEEGKKHS(0.535)S(0.516)GIVADLS(0.006)EQSLK 76.476 0.0024926 407720000.0 124030.0 145040.0 151730.0 155050.0 161590.0 250670.0 256050.0 241110.0 353100.0 265760.0 True False 123362.23626102858 149867.56872146868 173092.26513919787 174679.31410236532 182167.5286810325 233341.77291370922 243663.88329401205 259102.85253177193 266083.2362975912 248798.9692714169 0.49583097800719456 0.6023641060907164 0.6957113433632036 0.7020901839501038 0.7321876341147716 0.9378727476123694 0.9793605014022267 1.0414144933579466 1.0694708144362075 1.0 17.92462098309626 2.9805366900228747 0.7057271741557826 1.065565002920848 0.5451747995829549 0.9453636456291432 0.045091745216573845 0.15317481690157897 0.16943374771197375 0.03063929836088885 0.0405499700405429 956.1734709590139 -2.9805366900228747 -0.5203902033378932 RVEVNGEHATVR ddPTM_BT-474_Trastuzumab_2h_R1 3 RVEVNGEHATVR 12 1 Q15813-2;Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8Y7E7;A0A2U3TZJ6;A0A2R8YFL4;A0A2R8YER9;A0A2R8Y897;A0A2R8Y6L2;A0A2R8Y809;A0A2R8Y4V6;A0A2R8Y784;A0A2R8YFM3;A0A2R8YH53;A0A2R8Y4P2;A0A2R8Y6G3;A0A2R8Y787;A0A2R8Y5H6;A0A2R8YF12;A0A2R8Y597;A0A2R8Y3S1 Q15813-2 TBCE Tubulin-specific chaperone E 0 ;; 137.95 5.397600000000001e-05 288963000.0 143580.0 202544.0 210374.0 253891.0 226797.0 224511.0 214070.0 179205.0 234659.0 239832.0 False True 142806.98123323766 209285.55459956668 239992.83059641212 286033.5745679694 255678.2536188629 208991.08301204714 203714.61627318588 192578.18708455135 176830.4337195029 224525.71642949438 0.6360384169092806 0.9321228673833742 1.0688879403788685 1.2739457159589544 1.138748191898771 0.9308113401685751 0.9073108395454398 0.85771104596397 0.7875731855198478 1.0 17.776521170363186 2.509006426380343 6.53660637084854 0.8801741212282168 1.0249710750933057 0.10955684448457748 0.16154404155278226 0.4096510383810576 58.059348494461226 0.057597331167136674 0.0527446025986948 322.854189502206 -2.509006426380343 0.14479695386508884 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_BT-474_Trastuzumab_2h_R1 7 RVGDPPQPLPEEPMEVQGAERASPEPQR 28 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR 191.34 3.2148000000000004e-18 7782830000.0 1593140.0 1995841.0 2079121.0 2309820.0 2283979.0 2243994.0 2347510.0 1985028.0 2464760.0 2397660.0 True False 1584562.7112544926 2062271.3611736388 2371843.1647563064 2602242.975168817 2574830.187445852 2088871.9765736856 2233951.972940937 2133160.8691279464 1857352.924091904 2244639.2860600012 0.7059320047970219 0.9187540171737476 1.056670075894281 1.1593145461409593 1.1471019880283002 0.9306047477411247 0.9952387391660495 0.9503357097844741 0.8274616485716517 1.0 21.098052191562587 -0.279788145174344 7.4679734051916355 1.0000000689764237 0.9765384169005588 1.9194368606201273e-05 0.13071230387580254 0.0 0.0 0.13125600390577405 0.030937336811073607 0.5250635310043767 0.279788145174344 -0.023461652075864925 RVGELER ddPTM_BT-474_Trastuzumab_2h_R1 4 RVGELER 7 1 Q08379;B7ZC06;H0Y7B8 Q08379 GOLGA2 Golgin subfamily A member 2 0 ;;; 146.27 0.003576699999999999 500020000.0 359473.0 544194.0 476928.0 518716.0 481398.0 447099.0 467970.0 344921.0 496293.0 462859.0 False True 357537.63730920496 562307.1683177804 544075.3168675099 584385.3924148497 542701.1818305065 416192.09848783835 445332.50328099605 370660.75649334857 373988.2401354873 433318.9423464728 0.825114257348402 1.2976750226353393 1.2556001219823862 1.348626462647431 1.2524289358127667 0.9604752015550241 1.0277245228871565 0.8553993843107277 0.8630784477371267 1.0 18.72506977920259 2.6861052855688192 5.246088633748554 0.9305341743287701 1.2134193516085332 0.4391909023637125 0.1430127601925593 0.1862195949859005 11.608838882118318 0.046843236864210346 0.04459725019338711 485.40616242063214 -2.6861052855688192 0.28288517727976314 RVGMADANS(ph)PPKPLSKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVGMADANSPPKPLSKPR 18 3 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 RVGMADANS(1)PPKPLSKPR;RVGMADANS(1)PPKPLSKPR 166.27 1.4427e-10 2196500000.0 1558160.0 1291250.0 1149840.0 1008640.0 974490.0 1554500.0 1663760.0 1373790.0 2610100.0 1735420.0 True False 1549771.0396878514 1334228.4756728914 1311727.4774115558 1136333.7205818112 1098585.5252452448 1447041.0738993953 1583277.5726195893 1476309.1857642718 1966875.8285481278 1624664.0098321897 0.9539024871043498 0.8212334781827922 0.8073838464280644 0.699426905320062 0.6761924426200079 0.8906709726701333 0.9745261562008288 0.908685843245065 1.210635440094032 1.0 20.631709960407978 1.9072266990668891 1.278397309543405 1.0703407932833797 0.7940381779981792 0.5492166606562106 0.0995601743446091 0.3512677234847349 1.0634803380513662 0.07808179007496106 0.03400403878019945 80.76565119999277 -1.9072266990668891 -0.2763026152852005 RVIISAPSADAPMFVMGVNHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 RVIISAPSADAPMFVMGVNHEK 22 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;; 250.62 7.185399999999998e-32 11052650000.0 2958120.0 3117090.0 3051140.0 3058190.0 3006110.0 3768990.0 3699040.0 3090820.0 4137370.0 3749080.0 False True 2942193.8105980298 3220840.4563293024 3480713.991015697 3445356.540436718 3388920.289890084 3508448.5925481375 3520103.3034949526 3321472.683265946 3117770.6014176295 3509810.504651123 0.838277111171415 0.9176679060197455 0.9917099474182813 0.9816360558129871 0.9655564838612118 0.9996119699051613 1.0029325796450235 0.946339604051103 0.8883016895886626 1.0 21.74296171057196 4.58637513702505 2.7489199232199284 0.9713679545599919 0.8322641049420813 0.6103444462476535 0.033025284698188974 0.22450641738616278 2.7281287884438754 0.008442155338036697 0.0591933781548314 38581.1471907587 -4.58637513702505 -0.13910384961791067 RVIISAPSADAPMFVMGVNHEKYDNSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVIISAPSADAPMFVMGVNHEKYDNSLK 28 2 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 235.63 2.4488e-45 987760000.0 313480.0 344390.0 339710.0 314770.0 350740.0 515860.0 520260.0 348250.0 640690.0 476980.0 False True 311792.2585109025 355852.81296184857 387538.2151877474 354619.84972590517 395404.6600011469 480199.8124038221 495093.0362137974 374238.1833776685 482800.5343061565 446538.7280368767 0.6982423671999031 0.7969136619488489 0.8678714540427122 0.7941525056178765 0.885487943541804 1.0753822283566086 1.108734819912218 0.8380867321921573 1.081206408296763 1.0 18.768425779287835 2.9913843598930248 3.785834988027981 1.0034110428842744 0.7970188137953577 0.6444569388474051 0.08058394367428943 0.1658446498096906 5.253712189266532 0.026194799405895572 0.029898035781418766 980.3572386799423 -2.9913843598930248 -0.20639222908891675 RVIS(ph)DSESDIGGSDVEFKPDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVISDSESDIGGSDVEFKPDTK 22 2 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1 P52701 MSH6 DNA mismatch repair protein Msh6 1 RVIS(0.751)DS(0.249)ESDIGGSDVEFKPDTK 191.22 7.8378e-18 146360000.0 104920.0 147940.0 120900.0 70099.0 95415.0 152800.0 180450.0 153260.0 193740.0 183490.0 True False 104355.12237770784 152864.09346838164 137921.66911836172 78973.52621258756 107565.5346809871 142237.2956525104 171720.94411405787 164697.03943851098 145995.37298299433 171779.51110630744 0.6074945824774565 0.8898854845021662 0.8028994158273483 0.4597377516327545 0.6261837281305284 0.8280224733232908 0.9996590571723462 0.9587699858837448 0.849899804946142 1.0 17.39019844462633 2.495000578825228 4.093756768237141 0.9500371707890855 0.685396749655821 0.5601142218446191 0.11476766723612458 0.1777411248914675 6.852212168489069 0.042655368084907455 0.03771115393919608 312.6083533547622 -2.495000578825228 -0.26464042113326447 RVLVDVER ddPTM_BT-474_Trastuzumab_2h_R1 2 RVLVDVER 8 1 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ; 111.06 0.005301 548080000.0 512010.0 625680.0 409140.0 550050.0 479260.0 536670.0 401090.0 453450.0 622320.0 513780.0 False True 509253.3950496583 646505.3805684528 466743.35569136933 619686.2736021027 540290.9202034258 499571.26608529285 381687.74438740674 487288.741572444 468957.5746607676 480990.1205308121 1.0587606133940035 1.344113637625199 0.9703803379085618 1.288355513244696 1.1232890180928672 1.0386310336976878 0.7935459130973064 1.0130951152066925 0.9749837983017913 1.0 18.875647735983936 2.6383732773549675 3.2185552258664534 0.9462006901589622 1.1659645463192565 0.42812309424427597 0.11453385521205921 0.2243907324972438 4.4404224659372336 0.036631358727259145 0.03446343038647858 434.8838474997995 -2.6383732773549675 0.21976385616029426 RVNALK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVNALK 6 1 P55209;F8VY35;P55209-2;H0YIV4;F5H4R6;F8W0J6;F8VV59;B7Z9C2;F8W543;F8W118;F8VUX1;H0YHC3;H0YH88;F8W020;P55209-3;F8VXI6;F8VRJ2;F8VVB5 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 ; 114.6 0.040326 1200590000.0 1061000.0 1264350.0 896600.0 1045020.0 1152790.0 1435080.0 1344220.0 1348960.0 2047260.0 1668120.0 False True 1055287.6938881811 1306433.1254342855 1022833.4866130938 1177319.4248516848 1299590.9733783493 1335876.2974149513 1279194.9431809303 1449626.245080085 1542740.2048785235 1561659.1534506166 0.6757477722052437 0.8365673921531547 0.6549658959530686 0.7538901316912202 0.8321860570578377 0.8554211682256149 0.8191255693372284 0.9282603325296781 0.987885353516297 1.0 20.5746481756301 2.0884761217520396 0.5541090084786959 1.0132564899231378 0.7202978174767138 0.7747359422593201 0.052920574863998524 0.38706490015486283 0.245968463449363 0.04866561134915872 0.03553836169699474 122.59594954903629 -2.0884761217520396 -0.29295867244642393 RVNDAEPGS(ph)PEAPQGK ddPTM_BT-474_Trastuzumab_2h_R1 3 RVNDAEPGSPEAPQGK 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 RVNDAEPGS(1)PEAPQGK;RVNDAEPGS(1)PEAPQGK;RVNDAEPGS(1)PEAPQGK 166.27 4.1262e-09 2395600000.0 1432860.0 1534400.0 1298640.0 1329790.0 1402940.0 1671450.0 1652600.0 1511710.0 1987200.0 1641710.0 True False 1425145.6409657123 1585471.5764356116 1481477.2240187707 1498141.2776535596 1581596.0931231366 1555906.5956700807 1572657.4244549302 1624521.476507841 1497481.1871157556 1536934.6622613543 0.9272649488357805 1.0315803367352279 0.9639168537190861 0.9747592493289751 1.0290587700039702 1.0123440077672607 1.0232428632594022 1.0569879881019904 0.9743297642285267 1.0 20.551624404206386 3.2420494839710954 24.937605020068805 1.0217076589459364 0.9777186606209618 0.2865172222397325 0.03122590073647082 104.00152470314656 743372.5473723155 0.008418910193835238 0.010967845543198336 1746.0210850700837 -3.2420494839710954 -0.043988998324974604 RVNNGNTAPEDS(ph)SPAKK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVNNGNTAPEDSSPAKK 17 2 G3V167;Q9UGN5-2;Q9UGN5;E9PJ27 G3V167 PARP2 Poly [ADP-ribose] polymerase 2 1 RVNNGNTAPEDS(0.5)S(0.5)PAKK;RVNNGNTAPEDS(0.588)S(0.412)PAKK 80.316 0.0074687 101260000.0 134561.0 97495.3 77416.2 89366.5 88010.2 152231.0 141463.0 121496.6 234300.0 152076.0 True False 133836.53852713256 100740.37212334671 88315.72804632685 100680.28973704629 99217.77729267525 141707.62928322848 134619.894248861 130563.29323923383 176559.90445914926 142370.37948118613 0.9400588733053051 0.70759361947658 0.6203237525120002 0.7071716048235365 0.696899015471028 0.9953448870448138 0.9455611113732451 0.9170678178636689 1.2401449311475718 1.0 17.11928949559585 2.7341146842791306 23.62053059096196 1.0002982203811002 0.7250683015052553 0.6145931012478856 0.11228804806232057 125.35791338089052 666003.747215879 0.03611123101670709 0.03517296556996824 542.1440356449727 -2.7341146842791306 -0.2752299188758449 RVNNGNTAPEDSS(ph)PAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVNNGNTAPEDSSPAKK 17 2 G3V167;Q9UGN5-2;Q9UGN5;E9PJ27 G3V167 PARP2 Poly [ADP-ribose] polymerase 2 1 RVNNGNTAPEDS(0.389)S(0.611)PAKK 63.044 0.029699 235820000.0 330890.0 218920.0 219000.0 199490.0 188460.0 326610.0 331080.0 274040.0 555980.0 362520.0 True False 329108.5250053349 226206.61986006526 249833.29641787568 224745.41354582936 212459.26391006497 304032.219457241 315064.39555157855 294490.25634692376 418966.1787503115 339383.66323101317 0.9697241224640676 0.6665218287366117 0.7361382514391037 0.6622163583426485 0.6260149999189775 0.8958363421585529 0.9283428452391921 0.8677207781403103 1.234491297435044 1.0 18.372557594582982 1.889712358905914 1.1042375302221306 1.077307070130734 0.7331113103870166 0.5351263841449663 0.12282610189755211 0.3815792417197212 0.8565480546304923 0.09804789221640207 0.042415937603022646 77.57331643356055 -1.889712358905914 -0.3441957597437173 RVNSNGKES(ph)PGS(ph)SEFFQEAVSHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVNSNGKESPGSSEFFQEAVSHGK 24 2 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 RVNS(0.321)NGKES(0.746)PGS(0.497)S(0.436)EFFQEAVSHGK 100.95 0.0021554 364470000.0 218440.0 176690.0 163400.0 169360.0 162390.0 252280.0 250370.0 238770.0 301870.0 247080.0 True False 217263.94331096538 182571.01983863942 186405.29970173945 190800.9586351278 183069.40393906075 234840.4774032414 238258.64659371966 256588.22984949307 227478.18335076136 231311.14286416964 0.9392714100182669 0.7892876131170586 0.8058638999989733 0.8248671303620242 0.791442217924463 1.015257952969193 1.0300353179856525 1.1092774289743863 0.9834294212291405 1.0 17.819475240487296 2.6733004793460657 5.029861686593858 1.0433703416274944 0.8262498089171079 0.7866202118038577 0.0511691557320841 0.08890536823411889 4.489240659177869 0.0166274789202949 0.015766011471512447 471.3032985961308 -2.6733004793460657 -0.21712053271038656 RVNTTQK ddPTM_BT-474_Trastuzumab_2h_R1 5 RVNTTQK 7 1 P36578;H3BM89;H3BTP7 P36578 RPL4 60S ribosomal protein L4 0 ;;;; 125.49 0.0064841000000000005 1526640000.0 1142410.0 1062630.0 997591.0 833699.0 778636.0 616343.0 997896.0 871722.0 1660850.0 1164280.0 False True 1136259.3914936844 1097998.9971765997 1138043.141583587 939245.2079189153 877790.6792628525 573736.6591253622 949623.9581470883 936774.3221546236 1251555.771749799 1089974.653609743 1.0424640497195572 1.0073619542805714 1.0441005557465508 0.8617128892019215 0.8053312766088766 0.526376147578551 0.8712348998228115 0.8594459688142696 1.1482430051056112 1.0 20.055863156127575 3.7104394995412986 6.106837793047851 0.8457060773150779 1.0292592984415223 0.1938438538839451 0.14860700097043025 0.2715200354061589 35.22038747801161 0.04088193960621042 0.06575470364620906 5133.806547691417 -3.7104394995412986 0.18355322112644445 RVPDPS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVPDPSPVTK 10 1 A0A0J9YWL0;Q9Y4K1;A0A494C1M5 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 RVPDPS(1)PVTK;RVPDPS(1)PVTK 79.089 0.017182 485570000.0 757090.0 697590.0 679120.0 650400.0 630610.0 835520.0 870990.0 761030.0 1152050.0 843550.0 True False 753013.9115606068 720808.8614479402 774734.1929831415 732740.5733129863 710914.4455816932 777762.469002523 828856.8861950861 817821.9230320371 868142.7141790995 789713.9168005097 0.9535274680372973 0.9127468138946631 0.9810314551906875 0.9278557180322359 0.9002176996727258 0.9848661046187366 1.049566011896007 1.0355926439100955 1.099312922958659 1.0 19.590970589039884 2.4129424911300252 3.421723974803671 1.0477288705754815 0.9360489338352745 0.7419765122864053 0.030771801822762037 0.11430495605032606 2.729574014279851 0.01086557093763962 0.009024466975359738 258.78702091053054 -2.4129424911300252 -0.11167993674020693 RVPGS(ph)SGHLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVPGSSGHLHK 11 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 RVPGS(0.5)S(0.5)GHLHK;RVPGS(0.5)S(0.5)GHLHK 92.939 0.0045243 609330000.0 713340.0 731370.0 606750.0 615540.0 615880.0 639930.0 647100.0 299760.0 781020.0 497300.0 True False 709499.4566995245 755713.208327499 692175.1260344584 693467.3008872615 694308.6673932432 595693.1453331874 615797.3008379432 322129.61335043743 588548.086131818 465561.8882400501 1.5239637835941091 1.6232282483093694 1.4867521236565726 1.4895276404792401 1.4913348470552814 1.2795144112527523 1.3226969741140615 0.6919157720752755 1.2641672374787571 1.0 18.82861343582401 2.23835996765269 1.6239364853775509 0.9641308030812038 1.5239345199852474 0.6714125800168338 0.15392263833344802 0.1979334023442512 1.0346680438569664 0.08126137446136182 0.04966782928807144 173.12507225029128 -2.23835996765269 0.5598037169040436 RVPLS(ph)PLSLLAGPADAR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVPLSPLSLLAGPADAR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 RVPLS(1)PLSLLAGPADAR;RVPLS(0.658)PLS(0.342)LLAGPADAR 185.41 3.5581000000000004e-10 325740000.0 168255.0 257438.0 243972.0 287592.0 218404.0 263634.0 205627.0 178882.0 267999.0 217910.0 True False 167349.1337748879 266006.6682054425 278321.1369573608 324001.117712528 246216.45481807177 245409.60210768273 195680.0364385779 192231.08318439056 201954.23745261432 204002.7972378627 0.8203276427614987 1.3039363763982348 1.364300591588676 1.5882189955206836 1.2069268566498572 1.2029717505370312 0.9592027123550633 0.9422963105758468 0.9899581779613552 1.0 17.638229408660667 2.3481534191381397 2.8294129308009497 0.9614141881694003 1.2806242741960276 0.35722068158865516 0.17973186243739286 0.2817004938034086 4.587108996746818 0.07259750616514413 0.05700700054222981 222.92225067167928 -2.3481534191381397 0.31921008602662737 RVPPPALS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 RVPPPALSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R 77.597 0.019693 585380000.0 161526.0 202174.0 173395.0 183943.0 217861.0 204984.0 185751.0 166649.0 225543.0 216659.0 True False 160656.3619632258 208903.23937323628 197807.5088236418 207230.16493989932 245604.30698668462 190813.93856043305 176765.5144922715 179085.1946064755 169960.94977136108 202831.63712889788 0.7920675701154547 1.029934197299211 0.975230055940123 1.0216856101605403 1.2108777036128986 0.9407503743568973 0.8714888712353015 0.8829253519886954 0.8379410242759725 1.0 17.62992317199093 2.4832613710297062 24.70261336887641 0.8895226482031635 1.0133931632143869 0.19572079563977884 0.10247858591696166 346.8504446084262 1395440.5756681783 0.03480218776956922 0.03007759366204735 304.27156693941436 -2.4832613710297062 0.12387051501122337 RVPS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVPSPGK 7 1 D6RIF6;H0Y9L2 D6RIF6 SLAIN2 1 RVPS(1)PGK;RVPS(1)PGK 72.643 0.031268000000000004 282030000.0 707020.0 590630.0 524460.0 516800.0 487590.0 621030.0 730050.0 679660.0 959510.0 713260.0 True False 703213.482877307 610288.7625066261 598299.4093119595 582226.8270113029 549681.6963276475 578099.6578473728 694734.6924381708 730379.6804435499 723051.617275281 667739.136147392 1.0531260559843607 0.9139628478686552 0.8960077025946479 0.8719375508982992 0.8231982619726437 0.865756740248586 1.0404282972637087 1.0938099040556026 1.0828354639313513 1.0 19.348925073408346 2.1611972726719513 5.4466491434331425 1.068001570663599 0.8991412944656076 0.5900784902907941 0.06112039139805832 0.13702778798231616 7.030784036074184 0.024244755456926798 0.017846546029835604 144.94300889760746 -2.1611972726719513 -0.16886027619799138 RVPS(ph)PTPAPK ddPTM_BT-474_Trastuzumab_2h_R1 14 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RVPS(0.521)PT(0.479)PAPK;RVPS(0.988)PT(0.012)PAPK;RVPS(0.986)PT(0.014)PAPK;RVPS(0.967)PT(0.033)PAPK;RVPS(0.922)PT(0.078)PAPK;RVPS(0.978)PT(0.022)PAPK;RVPS(0.866)PT(0.134)PAPK;RVPS(0.978)PT(0.022)PAPK;RVPS(0.99)PT(0.01)PAPK;RVPS(0.986)PT(0.014)PAPK;RVPS(0.989)PT(0.011)PAPK;RVPS(0.904)PT(0.096)PAPK;RVPS(0.883)PT(0.117)PAPK;RVPS(0.99)PT(0.01)PAPK 145.31 1.8777e-05 45430753000.0 25815989.0 26474186.0 23914043.0 22760441.0 22787737.0 26723565.0 27163030.0 25571336.0 34469972.0 27024352.0 True False 25676998.583650023 27355363.27702661 27280932.389812 25641910.49691942 25689620.233450856 24876227.852055512 25849050.466048624 27479598.940933183 25975309.27456062 25299634.71864822 1.014915783140681 1.0812552663799182 1.0783132916027194 1.0135288822181654 1.0154146697823736 0.9832643090976876 1.0217163509872904 1.0861658378284063 1.0267068897802845 1.0 24.5926132193525 0.7235845027904314 0.003867241318336563 9.61950297180905e-09 2.0551594619381306 0.07763656990751844 0.033193984210498295 42266.24284813676 85.3448208989052 22841.590542284364 22508.794966956757 5.291569478354422 -0.7235845027904314 2.0551594523186276 RVPSPTPAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 69.65 0.090839 0.0 100010.0 128300.0 119530.0 99807.0 123080.0 141200.0 172160.0 128620.0 199770.0 185610.0 False True 99471.5572721556 132570.3879410122 136358.78502661525 112442.5559665577 138753.5084476854 131439.1763490475 163831.96308493312 138218.27751912616 150539.36028085477 173764.21089128414 0.5724513509539092 0.7629326387811531 0.7847345798492898 0.6470984755135082 0.7985160335145006 0.7564226009191424 0.9428406588709735 0.7954358196671618 0.8663427267830196 1.0 17.406771444468678 6.241528731732841 0.0911921442825344 1.166607729730432 1.1556232341504158e-12 0.6715378341990272 0.06852392692715427 62.06072801666633 0.595299195074723 1.3930933373581529 9.28545526638549 1743928.7271952897 -6.241528731732841 -1.1666077297292765 RVPVLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVPVLGK 7 1 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;Q9P2J5-3 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 126.2 0.0063733 1181340000.0 1653450.0 1935230.0 1810430.0 1677310.0 1621360.0 1948990.0 2023870.0 1832890.0 2848000.0 2262710.0 False True 1644548.0089155654 1999642.9606787588 2065322.8074603423 1889657.2740215291 1827830.585446369 1814260.9087289658 1925967.6761657982 1969669.5590268334 2146148.5612448044 2118301.9105965076 0.7763520396639143 0.9439839291442952 0.9749898242213989 0.892062299792482 0.8628753891515195 0.8564694671960501 0.9092035778901089 0.9298341984085641 1.0131457421196657 1.0 21.014476793158433 1.4145503220279432 2.3296934958860276 1.0089889552164903 0.8913115028369538 0.45925281264966467 0.05064580913662134 0.2763932138411395 2.6900106475004715 0.04385592949644894 0.01380947867693099 25.974686946151962 -1.4145503220279432 -0.11767745237953653 RVQVDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVQVDVK 7 1 Q13263;Q13263-2;M0R3C0 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 81.191 0.04469 245850000.0 377740.0 316690.0 281570.0 232860.0 217290.0 328430.0 242340.0 271790.0 400120.0 328510.0 False True 375706.28981085913 327230.8352068526 321212.6085496866 262340.052124326 244960.5935212671 305726.40714106004 230617.08837129842 292072.3499216553 301515.7873333111 307544.21054843883 1.221633433257833 1.0640123402853428 1.0444436849481677 0.853015739286716 0.7965052994638808 0.9940892940103242 0.7498664597198644 0.9496922390468909 0.9803981898915368 1.0 18.23043429221975 4.294143678847429 1.5066411413398826 0.8962746480139188 1.218565650176198 0.5770529160195019 0.08522485223811181 0.3641866043204961 1.3322205535785643 0.023094461883125618 0.13801814716852573 19685.3743868835 -4.294143678847429 0.3222910021622791 RVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_BT-474_Trastuzumab_2h_R1 6 RVSEVEEEKEPVPQPLPSDDTR 22 2 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR 247.41 3.7256999999999998e-31 16992030000.0 7019160.0 5974420.0 5711970.0 5195110.0 5405030.0 6873680.0 6843470.0 6685640.0 9509590.0 7069200.0 True False 6981369.622461984 6173274.95808685 6516165.726666737 5852810.393333375 6093328.532377252 6398518.680502278 6512425.211505853 7184556.405792039 7166078.96647751 6618037.603753392 1.054900265072917 0.93279538855834 0.9846069358945803 0.8843724898169179 0.9207153082541337 0.9668302091353161 0.9840417358481551 1.0856022337675066 1.0828102521528888 1.0 22.65797205840503 1.9077064527024987 3.6461185327488352 1.0634328233021773 0.9534538690335498 0.4573558809608581 0.04768071933970916 0.1924372016621413 4.426265462683656 0.023238816165939282 0.013006957761309062 80.85492017767231 -1.9077064527024987 -0.10997895426862747 RVS(ph)GDAAQDLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSGDAAQDLDR 12 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 RVS(1)GDAAQDLDR 79.51100000000002 0.013988999999999998 291710000.0 318990.0 328480.0 298470.0 292060.0 278530.0 349470.0 339820.0 315750.0 407870.0 334420.0 True False 317272.59328312066 339413.2582296468 340491.9816522529 329034.76605441316 313999.1445233491 325311.9614638925 323381.6083615362 339312.86834601255 307355.9036779909 313077.02928863355 1.0134010598095304 1.0841206044431104 1.0875661572039028 1.0509706406823855 1.0029453302173295 1.039079622682823 1.0329138777645759 1.0837999489039214 0.9817261406126088 1.0 18.256158135110493 3.471852183646698 24.934976430693297 1.0322192079670895 1.0648267414843886 0.19771740899473067 0.032690430914996293 240.7742238167304 1139414.931419165 0.00912690657293372 0.01239249477907955 2963.822452018913 -3.471852183646698 0.03260753351729906 RVS(ph)GPDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSGPDPK 8 1 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 RVS(1)GPDPK 60.754 0.095646 275100000.0 845810.0 682500.0 647780.0 559540.0 557440.0 792980.0 714440.0 710290.0 967600.0 741820.0 True False 841256.252938326 705216.5999200373 738981.7933953042 630377.7066290716 628426.6797942611 738163.159074134 679879.8077741616 763295.4465795382 729147.9451757265 694476.4124959448 1.211353240803176 1.0154651579677016 1.0640847984158417 0.9077021123921218 0.9048927630755648 1.0629060192572692 0.9789818567497158 1.0990948473487503 1.0499247088251313 1.0 19.405566169143093 4.742164355292688 5.3990525207469675 1.0114594562792159 1.2195200899899314 0.492209237972692 0.06155769881103174 0.14632148827555272 15.695044457569669 0.015826936793659957 0.11235084556812198 55228.64081357321 -4.742164355292688 0.2080606337107156 RVS(ph)GPDPKPGS(ph)NCSPAQSVLSEVPSVPTNGMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 RVS(0.998)GPDPKPGS(0.55)NCS(0.383)PAQS(0.059)VLS(0.011)EVPSVPTNGMAK 115.24 2.1282e-06 1318000000.0 193170.0 146530.0 134080.0 138300.0 130560.0 222780.0 177520.0 275370.0 275420.0 232160.0 True False 192129.99418320437 151407.16247074463 152957.29855574813 155808.76581978146 147186.04211025187 207379.7429677113 168932.679407745 295919.5077005273 207546.43143891962 217343.35003782404 0.8839929730988695 0.6966266161094664 0.7037588153910811 0.7168784588655057 0.677205178279608 0.9541572950431711 0.7772617813167314 1.3615300751047996 0.9549242311890405 1.0 17.72961642920063 1.764262472306921 24.999999999999865 1.1380257846082282 0.7683947838439313 0.572875710404881 0.13068232333324523 9.763681952902207 9503.352209471006 0.05810631980493464 0.03222524284550343 58.11155171901473 -1.764262472306921 -0.3696310007642969 RVS(ph)GPDPKPGSNCS(ph)PAQSVLSEVPSVPTNGMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 RVS(0.999)GPDPKPGS(0.198)NCS(0.78)PAQS(0.019)VLS(0.003)EVPSVPTNGMAK 117.19 1.8058e-06 192790000.0 198330.0 167460.0 152060.0 146230.0 155300.0 206620.0 192970.0 183000.0 280200.0 209020.0 True False 197262.21331653438 173033.8048682922 173468.72627078652 164742.70300670035 175076.53446478315 192336.84573116284 183635.30388301323 196656.38925517086 211148.4644876383 195680.16464897498 1.008084869871187 0.8842684958830271 0.8864911095203086 0.841897814743909 0.8947076203602338 0.9829143698656958 0.9384461844276926 1.0049888787039152 1.0790488901438295 1.0 17.57813799732603 1.9924909355191134 1.1789399842103996 1.0371659742101842 0.9015428741827554 0.5261153512337795 0.048589983315288965 0.3687009646949796 0.9470500726583062 0.03712501044742709 0.01716325470959603 98.28583588232377 -1.9924909355191134 -0.13562310002742883 RVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK ddPTM_BT-474_Trastuzumab_2h_R1 6 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 RVS(0.951)GPDPKPGS(0.013)NCS(0.018)PAQS(0.018)VLSEVPSVPTNGMAK;RVS(0.999)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK;RVS(0.927)GPDPKPGS(0.032)NCS(0.02)PAQS(0.02)VLS(0.001)EVPSVPTNGMAK;RVS(0.998)GPDPKPGS(0.001)NCS(0.001)PAQS(0.001)VLSEVPSVPTNGMAK;RVS(0.985)GPDPKPGS(0.001)NCS(0.007)PAQS(0.007)VLS(0.001)EVPSVPTNGMAK;RVS(0.997)GPDPKPGS(0.002)NCS(0.001)PAQS(0.001)VLSEVPSVPTNGMAK 197.31 3.6928e-27 24009330000.0 11025040.0 9354450.0 8951490.0 7980400.0 7740080.0 11268650.0 11435320.0 10368070.0 14229870.0 11318380.0 True False 10965682.409637108 9665807.213365568 10211781.98425411 8990717.821751155 8725733.308951585 10489674.749048825 10882149.884435408 11141788.031392686 10723109.208988983 10596031.298247369 1.0348858078072005 0.9122101418258679 0.9637364874472563 0.8484986094027733 0.8234907073552019 0.9899626052240771 1.0270024293185471 1.0515057683187088 1.0119929723841636 1.0 23.337020674428423 2.5019095974402616 12.488383401458025 1.026934890806365 0.9143082450235974 0.450568237092842 0.055783273152535146 1.369074526401071 688.8935731452463 0.018980371694121707 0.017571773976756227 317.6212842679967 -2.5019095974402616 -0.11262664578276749 RVS(ph)HS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 RVSHSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK 93.766 0.032115 46078000000.0 6686980.0 6424800.0 5001920.0 5785400.0 5863390.0 6875030.0 6892070.0 6337390.0 8432500.0 6767910.0 True False 6650978.042673313 6638645.584126383 5706146.858531967 6517831.046809577 6610057.961464693 6399775.358179829 6558674.243835825 6810318.222414361 6354423.364710951 6335976.18950073 1.0497163884066625 1.0477699703365684 0.9005947446563254 1.0287019477141024 1.0432580179859483 1.0100693510788157 1.0351481835907346 1.0748648698679864 1.0029114969277806 1.0 22.59513548312652 3.5072375012014954 24.99771645009882 1.0341945899684555 0.9976091743772648 0.07024412377567946 0.04371512616882893 1471.5976827608486 1221484.3446893443 0.011780331076572271 0.018223755370215443 3215.418463289419 -3.5072375012014954 -0.03658541559119066 RVS(ph)ISEGDDKIEYR ddPTM_BT-474_Trastuzumab_2h_R1 7 RVSISEGDDKIEYR 14 2 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299;M0R2U2;M0R1H0;M0R2B0 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 1 RVS(0.997)IS(0.003)EGDDKIEYR;RVS(0.999)IS(0.001)EGDDKIEYR;RVS(1)ISEGDDKIEYR;RVS(1)ISEGDDKIEYR;RVS(0.999)IS(0.001)EGDDKIEYR;RVS(0.976)IS(0.024)EGDDKIEYR;RVS(0.985)IS(0.015)EGDDKIEYR 289.68 1.008e-43 1991790000.0 2141660.0 1955460.0 1815860.0 1720760.0 1762370.0 2344980.0 2105390.0 2054720.0 3316360.0 2462480.0 True False 2130129.5405207966 2020546.3039994698 2071517.3042619347 1938608.0395665006 1986797.3731146182 2182877.05208916 2003544.2423291593 2208053.6400567507 2499087.514947269 2305322.4181648074 0.9240050431715854 0.8764701579607946 0.8985802974626875 0.8409270756624854 0.8618305871055744 0.9468857956219754 0.8690950239941344 0.957806865824222 1.0840511918227524 1.0 21.136537106772 1.4875291113211873 3.6420326502803255 1.0404213663499837 0.8881172519572279 0.7545051322976524 0.03493230677345428 0.09340583950543449 2.523074967604206 0.02339128098358077 0.008798362653191345 30.72763329667107 -1.4875291113211873 -0.15230411439275582 RVS(ph)LSEIGFGK ddPTM_BT-474_Trastuzumab_2h_R1 5 RVSLSEIGFGK 11 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 RVS(1)LSEIGFGK;RVS(0.986)LS(0.014)EIGFGK;RVS(0.884)LS(0.116)EIGFGK;RVS(0.975)LS(0.025)EIGFGK;RVS(0.943)LS(0.057)EIGFGK 190.82 1.2875e-06 5942030000.0 7893990.0 7314270.0 6273140.0 6761830.0 7041310.0 8475090.0 7980400.0 8187030.0 10690270.0 9455950.0 True False 7851489.634944734 7557721.055380415 7156343.58488966 7617876.984693952 7937979.09138585 7889226.976515931 7594357.563911488 8797987.75149597 8055796.200778964 8852463.175353898 0.8869271161504553 0.8537421625680219 0.8084013955362845 0.8605375513905382 0.8966972168250235 0.8911900360659271 0.857880729179976 0.9938462976034069 0.9100061803371371 1.0 23.077647506602347 1.7859729496731354 0.6618323890521904 0.9928517282251798 0.8499956363005059 0.6178458263427318 0.03543768473423673 0.4313642326409794 0.38300785145363636 0.03260500433904295 0.017223663711708928 61.09039731515293 -1.7859729496731354 -0.14285609192467386 RVS(ph)LVGADDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 RVSLVGADDLR 11 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 RVS(1)LVGADDLR;RVS(1)LVGADDLR;RVS(1)LVGADDLR;RVS(1)LVGADDLR 124.68 0.00021081 1300640000.0 908180.0 1055660.0 998160.0 1122460.0 926120.0 1119910.0 1162530.0 919120.0 1045370.0 1089540.0 True False 903290.4597882831 1090797.004940053 1138692.2518377495 1264563.3209115842 1044055.8924566966 1042493.2576845753 1106293.9826041325 987709.4015967924 787752.5707403368 1020004.6243978757 0.885574867193871 1.0694039799907447 1.1163598915151358 1.2397623409384788 1.0235795676642336 1.0220475797352144 1.084597026466615 0.9683381604077063 0.7723029404943719 1.0 19.960144262286395 1.5405288000356916 4.089170564955447 0.8808158460235077 1.0682658110285004 0.34374111505600524 0.09810940653740836 0.18206329460071866 6.746190083166632 0.06102325265347476 0.025496904780854923 34.71592968309754 -1.5405288000356916 0.18744996500499267 RVS(ph)PLNLSSVTP ddPTM_BT-474_Trastuzumab_2h_R1 3 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 RVS(0.998)PLNLS(0.002)SVTP;RVS(1)PLNLSSVTP;RVS(1)PLNLSSVTP 77.77600000000002 0.029143 3023180000.0 3489080.0 4156820.0 4249040.0 4231990.0 3541120.0 3795810.0 4049670.0 3369990.0 4186030.0 4463870.0 True False 3470295.18095323 4295177.240849243 4847267.898682246 4767759.500084293 3992060.642137373 3533414.5890756277 3853771.990858285 3621475.7662624777 3154438.996428222 4178981.9948886177 0.8304163993043774 1.0278046773359506 1.1599159567117112 1.1408901751469183 0.955271079660101 0.8455204146362454 0.9221796111043067 0.8665928139178309 0.7548343113912596 1.0 21.994720112157538 3.0052926588952817 6.069305141688126 0.8752973395046966 1.0482060780954072 0.3617210343931836 0.10109479553465736 0.16178737432632767 24.308533946788025 0.030726053364839342 0.035429722107293664 1012.2613590720971 -3.0052926588952817 0.17290873859071065 RVS(ph)QDLEVEKPDASPTSLQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSQDLEVEKPDASPTSLQLR 21 2 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 RVS(1)QDLEVEKPDASPTSLQLR 189.64 1.6439e-17 374530000.0 354260.0 302390.0 301380.0 277100.0 274370.0 351970.0 375350.0 312390.0 449670.0 376830.0 True False 352352.7035219865 312454.8683513852 343811.6843580794 312180.83158829686 309309.3931816007 327639.14234825963 357192.88652375486 335702.12808427773 338854.85376929434 352780.3867796061 0.9987876784718001 0.8856922891991338 0.9745770945391877 0.8849154978202539 0.8767760475721594 0.9287340074065595 1.01250778078801 0.9515895459743975 0.9605263400909769 1.0 18.4284108293165 2.379348393815677 8.225999351400178 0.9754864266810445 0.9206900866385971 0.31398067947109387 0.040256674889457965 0.3094491224645364 23.169376851858612 0.01358563050244919 0.011348264827721445 239.52364599352157 -2.379348393815677 -0.05479634004244738 RVS(ph)RT(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RVSRTPEPK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK 80.318 0.034554 43595090000.0 13184830.0 11540130.0 8890590.0 9702630.0 9712030.0 12125560.0 12607740.0 11882420.0 16615160.0 12063880.0 True False 13113844.340252323 11924236.2508941 10142307.793606415 10930981.96316693 10948799.452788206 11287348.577698005 11997855.449956056 12769146.518106174 12520576.449737439 11293952.849992704 1.1611385769386133 1.0558071570930814 0.8980299394124854 0.9678614837828008 0.9694390970292814 0.9994152381914094 1.062325618790219 1.1306180119314402 1.1086088826504643 1.0 23.42904717769104 2.108797062075279 4.0125725243718415 1.0947316271332124 1.0021865251169135 0.16045955494115605 0.07197691183199155 0.32786146240894787 9.756403415877283 0.030230815257462938 0.021357036070936957 128.4686209128695 -2.108797062075279 -0.09254510201629884 RVS(ph)S(ph)DEEHTVDSCISDMK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSSDEEHTVDSCISDMK 18 1 Q70CQ2-3;Q70CQ2-2;Q70CQ2;H7C150;H7C183 Q70CQ2-3 USP34 Ubiquitin carboxyl-terminal hydrolase 34 2 RVS(1)S(1)DEEHTVDSCISDMK 129.9 7.0724e-05 432490000.0 493690.0 496090.0 481280.0 484080.0 503950.0 642360.0 552480.0 533940.0 676950.0 586940.0 True False 491032.0278941158 512602.05575726216 549040.0406392487 545364.4783661588 568125.0453543303 597955.1651527918 525754.4317214445 573785.314092382 510124.7431652627 549480.9866953848 0.8936287874985721 0.9328840636326381 0.9991975226316965 0.9925083698455465 1.0339303071632597 1.0882181178805364 0.9568200619340199 1.044231425627964 0.9283756044648365 1.0 19.067710035911862 4.3770898101576705 1.8206081362532673 1.011788701481412 0.8867867426749934 0.44211971271911865 0.042295034802774766 0.3856813684671665 2.1160049873327553 0.010851983780025769 0.06513570510327665 23828.121733193173 -4.3770898101576705 -0.12500195880641862 RVS(ph)SDLQHATAQLSLEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 RVS(0.5)S(0.5)DLQHATAQLSLEHR 146.25 4.0031e-08 106200000.0 786830.0 426200.0 289510.0 290690.0 334730.0 516690.0 441860.0 287110.0 903250.0 404250.0 True False 782593.7947050314 440385.80935665953 330270.4915339695 327491.3241948831 377355.8813998513 480972.4364574324 420485.54373088223 308535.6061150394 680656.1404299053 378450.41890416224 2.06788988890831 1.1636552302725331 0.8726915734174583 0.8653480293222139 0.9971078443842649 1.2708994690774342 1.1110716826485132 0.815260310738808 1.7985345145100045 1.0 18.52974477838227 4.732023200092351 4.291281335618233 1.0650613660616242 2.1380057375250283 0.5353854120666398 0.2704179662566099 0.14540899647531094 6.3006130621536185 0.06249466694439321 0.47300770703264466 53953.94440431832 -4.732023200092351 1.0729443714634042 RVS(ph)SSSELDLPSGDHCEAGLLQLDVPLLR ddPTM_BT-474_Trastuzumab_2h_R1 8 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 RVS(0.841)S(0.108)S(0.026)S(0.026)ELDLPSGDHCEAGLLQLDVPLLR;RVS(0.709)S(0.189)S(0.051)S(0.051)ELDLPSGDHCEAGLLQLDVPLLR;RVS(0.855)S(0.048)S(0.048)S(0.048)ELDLPS(0.001)GDHCEAGLLQLDVPLLR;RVS(0.894)S(0.095)S(0.005)S(0.005)ELDLPSGDHCEAGLLQLDVPLLR;RVS(0.847)S(0.14)S(0.012)S(0.001)ELDLPSGDHCEAGLLQLDVPLLR;RVS(0.786)S(0.169)S(0.037)S(0.008)ELDLPS(0.001)GDHCEAGLLQLDVPLLR;RVS(0.249)S(0.249)S(0.249)S(0.249)ELDLPS(0.004)GDHCEAGLLQLDVPLLR;RVS(0.25)S(0.25)S(0.25)S(0.25)ELDLPS(0.001)GDHCEAGLLQLDVPLLR 335.59 1.2247e-105 5513670000.0 639863.0 790608.0 815317.0 872604.0 854594.0 815420.0 764264.0 669596.0 808263.0 832434.0 True False 636418.0487034621 816922.9093473718 930106.546737595 983075.5769298967 963421.4803245143 759051.9346922125 727293.6305479988 719564.6536595927 609077.4138193154 779307.3494373969 0.8166457677614738 1.0482679393914744 1.193504138526429 1.2614735093151703 1.2362535539027502 0.9740084386990482 0.9332564758603289 0.9233387240336768 0.7815625173547059 1.0 19.571832896510116 2.534406408928883 5.265365189113544 0.9109162861184711 1.1206320382113142 0.3621063617974478 0.1271551207331866 0.24001312216574805 14.105805005544356 0.04506372848082087 0.04159479533848083 342.29961362980424 -2.534406408928883 0.2097157520928431 RVS(ph)TDLPEGQDVYTAACNSVIHR ddPTM_BT-474_Trastuzumab_2h_R1 4 RVSTDLPEGQDVYTAACNSVIHR 23 1 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 RVS(0.835)T(0.165)DLPEGQDVYTAACNSVIHR;RVS(0.947)T(0.053)DLPEGQDVYTAACNSVIHR;RVS(0.786)T(0.214)DLPEGQDVYTAACNSVIHR;RVS(0.75)T(0.25)DLPEGQDVYTAACNSVIHR 242.9 1.4135e-37 1947470000.0 538563.0 572380.0 569999.0 553741.0 581970.0 677460.0 642467.0 546933.0 737949.0 656047.0 True False 535663.436647974 591431.3222889835 650249.9046798766 623844.553823656 656080.42989356 630628.7847693039 611388.4167477223 587747.9177294996 556091.3569599871 614177.5187899057 0.8721638618479141 0.9629647849277546 1.058732833401397 1.015739806062581 1.0682260581374166 1.0267858485146306 0.9954588014753801 0.9569674886301937 0.9054244741091079 1.0 19.22829617964558 -0.3131605913398401 6.432932589697257 1.000001221593579 0.9890402257242535 0.0011779180109648957 0.0597214541024813 0.0 0.0 0.06016481961429467 0.014180983979377726 0.48622737760748214 0.3131605913398401 -0.010960995869325418 RVS(ph)VCAETYNPDEEEEDTDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVSVCAETYNPDEEEEDTDPR 21 1 P13861-2;P13861 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 RVS(1)VCAETYNPDEEEEDTDPR;RVS(0.994)VCAET(0.005)Y(0.001)NPDEEEEDTDPR 162.91 1.1017e-11 1015010000.0 455460.0 265748.0 202219.0 393740.0 264309.0 229780.0 181489.0 287365.0 494950.0 327073.0 True False 453007.85396636353 274593.2615319418 230689.67748094257 443587.44362892845 297967.1844678195 213895.849443939 172709.68371469234 308809.6355099032 372976.20449020946 306198.9211187168 1.4794560748655519 0.8967806304760914 0.7533980741607562 1.44869041996704 0.9731163760446244 0.6985519369645627 0.5640440635247399 1.0085262037555454 1.2180846461754917 1.0 18.224109673997507 3.0062121504714954 24.99905564031268 0.8753334994054386 1.1129350638869604 0.1560680640012504 0.26494756309035067 322.48056947045194 1297718.4449962883 0.07867744176052721 0.09380687596480629 1014.4067968783795 -3.0062121504714954 0.2376015644815218 RVS(ph)VELTNSLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVSVELTNSLFK 12 1 P14923 P14923 JUP Junction plakoglobin 1 RVS(1)VELTNSLFK;RVS(1)VELTNSLFK 193.3 1.8252e-06 1745490000.0 2213700.0 2408900.0 2535700.0 2108900.0 2247400.0 3384400.0 3152200.0 2556800.0 3711400.0 2900900.0 True False 2201781.685165191 2489078.7802891987 2892704.519300494 2375886.523769614 2533593.068616573 3150444.394020653 2999716.0434266175 2747601.399167331 2796775.200212067 2715762.078414556 0.8107417445237237 0.9165305017228558 1.0651538815908481 0.8748507620213332 0.9329215871869261 1.1600590563735471 1.1045577472595949 1.0117238991610644 1.029830713979483 1.0 21.3729256632932 2.8503716267291517 8.649346894369922 1.0612356052839078 0.9246386813538569 0.479176027407498 0.07356004358880683 0.30668981878047613 21.699543872062176 0.023141488666673222 0.024565444545210178 708.5518343879137 -2.8503716267291517 -0.13659692393005096 RVSHS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVSHSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RVS(0.142)HS(0.858)PPPK;RVS(0.007)HS(0.993)PPPK 69.641 0.033484 374680000.0 263190.0 279340.0 235730.0 252200.0 264230.0 307480.0 305380.0 254690.0 376240.0 300390.0 True False 261773.0142831581 288637.66303540405 268918.7349981093 284128.4941413515 297878.1242860893 286224.6313300651 290607.60273511254 273696.26108961477 283520.69335770526 281218.85302318196 0.9308515822073249 1.0263809127036392 0.9562614031995261 1.0103465364675592 1.0592395249600641 1.0178002941590494 1.03338591851506 0.973250044039732 1.0081852276608694 1.0 18.10133379093584 4.746968597054489 24.608624065964193 1.0082765097559883 0.9308515338499799 0.4201843610332846 0.027661168469825463 912.1828506352526 2669717.770032693 0.006835193399875838 0.07842375070679336 55842.98143594914 -4.746968597054489 -0.07742497590600839 RVSQDLEVEKPDAS(ph)PTSLQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSQDLEVEKPDASPTSLQLR 21 2 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 RVS(0.404)QDLEVEKPDAS(0.406)PT(0.082)S(0.108)LQLR 76.79899999999998 0.0083867 428390000.0 314340.0 268070.0 258790.0 246520.0 225370.0 317330.0 301220.0 245870.0 379230.0 290290.0 True False 312647.6283664572 276992.5478982632 295225.3825569959 277729.4067237353 254069.53362735466 295393.7240144706 286648.8378278555 264218.0679025626 285773.8479216529 271763.44367022713 1.1504403393778053 1.0192413819806514 1.0863322107267628 1.0219527798622818 0.9348922364100477 1.0869516518671942 1.054773349780227 0.9722355013398325 1.051553674998418 1.0 18.05199187909745 7.999997169339112 0.98899580267072 1.0191820104267375 117.3997327103707 0.3922419577085643 0.04602177606921476 1656.593547072363 2.305864871842645 0.013439096266555255 436814.56475155166 99999348.21836773 -7.999997169339112 116.38055069994397 RVSS(ph)DLQHATAQLSLEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 RVS(0.146)S(0.854)DLQHATAQLSLEHR 112.47 0.00012924 337440000.0 2367700.0 1315900.0 922970.0 852390.0 945080.0 1549300.0 1323900.0 893830.0 2743700.0 1193100.0 True False 2354952.5662761973 1359698.9360216514 1052916.1534009448 960302.4866024841 1065430.3360719734 1442200.5376599112 1259857.8992108698 960532.1333767741 2067551.8986964065 1116955.3365357006 2.1083677110852204 1.2173261468438241 0.9426662991437268 0.8597501217738177 0.9538701335869572 1.2911890838294187 1.1279393705377598 0.859955722451641 1.8510604954975498 1.0 20.091140067547617 4.729912875604438 3.748933412242124 1.086200430768982 2.206368515472054 0.5305235175613043 0.2788723078428552 0.1822047638413103 4.923849532946507 0.06482780550158952 0.5591336944964842 53692.40725106124 -4.729912875604438 1.1201680847030717 RVSS(ph)SSELDLPSGDHCEAGLLQLDVPLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 RVS(0.213)S(0.262)S(0.262)S(0.262)ELDLPSGDHCEAGLLQLDVPLLR 99.709 0.00037744 75487000.0 23470.0 28542.0 22971.0 28422.0 27082.0 27785.0 28482.0 23876.0 28081.0 30691.0 True False 23343.64012776214 29492.003215996665 26205.11713248871 32020.22228582669 30530.732172409906 25864.288348854734 27104.21684819393 25657.748359871388 21160.813816121947 28732.274104112927 0.8124536207323937 1.026441663097422 0.9120446588227953 1.1144339696120018 1.0625936555449864 0.9001824309184198 0.943336985787493 0.892993999253215 0.7364823869995326 1.0 14.81038456347059 2.0764505408371567 1.6573050253696295 0.8669595388314757 0.9858762576876458 0.15386869279007254 0.10026138934670153 0.6200076206068551 3.228179216099293 0.05972310190535875 0.03139187006702474 119.24784539885113 -2.0764505408371567 0.11891671885617006 RVSSDLQHATAQLS(ph)LEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 RVSSDLQHAT(0.006)AQLS(0.994)LEHR 107.08 0.00020236 179340000.0 41602.0 46038.0 46655.0 53361.0 46108.0 40145.0 40603.0 37255.0 49686.0 44851.0 True False 41378.0194544167 47570.34699944133 53223.61846747035 60116.49712877337 51979.58049647283 37369.87064116512 38638.877771477375 40035.1572770568 37441.551058289784 41988.570781127004 0.9854591067199474 1.132935608773405 1.267573948751627 1.4317347794984843 1.237945934559806 0.8900010156564345 0.9202236954644036 0.9534774947627362 0.8917081568091617 1.0 15.357709061695415 2.7413831526434094 24.95915140273734 0.9294589039742445 1.222177370111925 0.6218627286354361 0.1090154640244383 170.80532285800223 1510404.1799990153 0.03685125574635704 0.03753339877723383 551.2938562732126 -2.7413831526434094 0.2927184661376805 RVT(ph)QHESDNENEIQIQNK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 RVT(0.696)QHES(0.304)DNENEIQIQNK 129.32 1.634e-05 465510000.0 130310.0 138660.0 129470.0 146990.0 131200.0 144830.0 158100.0 148220.0 199130.0 171920.0 True False 129608.42543880198 143275.21427825978 147698.25062658638 165598.91892877556 147907.54231667466 134818.24299314845 150452.0989993493 159280.9290459096 150057.07970529405 160947.91841188286 0.805281775108891 0.890196131096292 0.9176772963823666 1.0288975499825372 0.9189776654219505 0.8376513615300958 0.9347874796014843 0.9896426783122025 0.9323331496669749 1.0 17.29623439256167 4.603472603120463 1.9034140705726688 0.94523721894566 0.7846589837711846 0.43187185461102484 0.05000242165117714 0.6029469126014815 2.8466568281910205 0.013690263249953585 0.15534700419380615 40130.31817961957 -4.603472603120463 -0.16057823517447545 RVVLGDGVQLPPGDYST(ph)TPGGT(ph)LFSTTPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.013)S(0.108)T(0.45)T(0.421)PGGT(0.411)LFS(0.226)T(0.212)T(0.156)PGGT(0.003)R 58.131 0.022742 1037100000.0 35410.0 52168.0 49082.0 48237.0 44583.0 43961.0 40148.0 48328.0 71262.0 50104.0 True False 35219.356494420834 53904.38034377809 55992.31897160815 54343.79925414898 50260.38078585597 40922.079543062915 38205.88785974616 51934.480764611515 53700.43496187748 46906.319823807484 0.7508445903817232 1.1491922740103502 1.19370522313262 1.1585602848033834 1.071505523661784 0.8724214497487128 0.8145147179155721 1.107195809854432 1.1448443442928475 1.0 15.517494693851294 2.964738697358034 24.366952404570906 0.9875308588589642 1.0831169429859349 0.05806383813633975 0.1466628122519876 1200.2969033546246 829452.1588253141 0.046605997926494475 0.049453830749500084 922.0165091134004 -2.964738697358034 0.09558608412697067 RVVLGDGVQLPPGDYSTT(ph)PGGT(ph)LFSTTPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.073)S(0.286)T(0.299)T(0.342)PGGT(0.321)LFS(0.224)T(0.216)T(0.199)PGGT(0.04)R 42.46100000000001 0.085012 123400000.0 36625.0 45082.0 48497.0 60101.0 66160.0 51629.0 56791.0 44543.0 69261.0 63245.0 True False 36427.81506942005 46582.52711735553 55324.956056519324 67709.78043770565 74585.08383895726 48060.008751593305 54043.80236731204 47867.02484477097 52192.55459985122 59208.64995323136 0.6152448180830709 0.786752056568607 0.9344066466676787 1.1435791981608985 1.2596991131848416 0.8117058705029702 0.9127686986614454 0.8084464834543755 0.8815021899853801 1.0 15.85352033805609 4.46828778788163 2.493477364634765 0.9626081460128637 0.6165487612602947 0.4196868207124649 0.13371774082322202 0.36968915226286814 4.0425053333131435 0.03836106756909808 0.210234577646299 29395.96948505182 -4.46828778788163 -0.34605938475256903 RVVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.011)S(0.08)T(0.354)T(0.549)PGGT(0.031)LFS(0.371)T(0.325)T(0.273)PGGT(0.005)R;RVVLGDGVQLPPGDY(0.042)S(0.314)T(0.295)T(0.341)PGGT(0.138)LFS(0.305)T(0.285)T(0.234)PGGT(0.046)R 101.92 5.8453e-06 1566460000.0 345750.0 428460.0 418980.0 482710.0 439720.0 436850.0 439040.0 417220.0 544690.0 469120.0 True False 343888.52041643596 442721.03209046053 477968.7421605561 543821.0365066282 495715.73557536735 406651.58773428784 417801.957904328 448355.0750002317 410458.44797206175 439180.3599661611 0.7830234495070149 1.0080620001417464 1.0883199380714192 1.2382635611221997 1.1287292892914482 0.9259329988381548 0.9513220444022582 1.0208905403574458 0.9346011010230231 1.0 18.744454013267696 2.728732895241404 24.56504042921543 0.9709694167174732 1.059657791299202 0.11748436919339977 0.11124430325537621 1257.4329418115078 3143031.329294306 0.038435111521429345 0.03666931024295361 535.4672270414152 -2.728732895241404 0.08868837458172885 RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_BT-474_Trastuzumab_2h_R1 8 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.009)S(0.06)T(0.16)T(0.768)PGGT(0.005)LFS(0.069)T(0.185)T(0.637)PGGT(0.106)R;RVVLGDGVQLPPGDYS(0.008)T(0.033)T(0.909)PGGT(0.05)LFS(0.01)T(0.049)T(0.929)PGGT(0.011)R;RVVLGDGVQLPPGDYS(0.027)T(0.125)T(0.844)PGGT(0.006)LFS(0.273)T(0.163)T(0.56)PGGT(0.002)R;RVVLGDGVQLPPGDY(0.012)S(0.06)T(0.22)T(0.699)PGGT(0.037)LFS(0.228)T(0.176)T(0.469)PGGT(0.098)R;RVVLGDGVQLPPGDYS(0.04)T(0.239)T(0.707)PGGT(0.014)LFS(0.001)T(0.058)T(0.937)PGGT(0.004)R;RVVLGDGVQLPPGDY(0.007)S(0.036)T(0.175)T(0.692)PGGT(0.118)LFS(0.283)T(0.199)T(0.473)PGGT(0.017)R;RVVLGDGVQLPPGDYS(0.005)T(0.023)T(0.736)PGGT(0.236)LFS(0.05)T(0.032)T(0.838)PGGT(0.08)R;RVVLGDGVQLPPGDY(0.001)S(0.038)T(0.172)T(0.789)PGGT(0.003)LFS(0.077)T(0.066)T(0.854)PGGT(0.001)R 165.95 3.106e-14 11157690000.0 3197410.0 4009110.0 3782450.0 4437700.0 4298230.0 4026790.0 4136210.0 3646640.0 5091980.0 4416410.0 True False 3180195.499825645 4142550.802791829 4314986.082355229 4999512.364992373 4845584.112894818 3748427.485344064 3936125.720443376 3918770.794062711 3837129.758036273 4134550.932721171 0.7691755529378825 1.0019348824578134 1.043640809502691 1.2092032354531725 1.1719734964555577 0.9066105476361908 0.952008037751466 0.9478105017522559 0.9280644549977405 1.0 21.979299211340212 2.694512140018989 24.9852401837593 0.9445010441382636 1.0468092503408237 0.1427029448422409 0.11224768808340485 897.9019194849349 509308.5319715128 0.03871984349882219 0.03650561910447978 494.8939447085678 -2.694512140018989 0.10230820620256009 RVVLGDGVQLPPGDYSTTPGGTLFSTT(ph)PGGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 RVVLGDGVQLPPGDYSTTPGGTLFS(0.02)T(0.048)T(0.93)PGGT(0.002)R;RVVLGDGVQLPPGDYSTTPGGT(0.001)LFS(0.051)T(0.197)T(0.6)PGGT(0.151)R 167.32 2.563e-14 639040000.0 139071.0 203916.0 203185.0 214401.0 196369.0 182616.0 217203.0 172106.0 208943.0 238317.0 True False 138322.25718824053 210703.22079017488 231791.68188432022 241544.14461696995 221375.4281797493 169992.18575182496 206696.06109396342 184949.42365656016 157451.7973427572 223107.4050265514 0.6199805747002399 0.944402633185123 1.0389241982207418 1.0826361616649365 0.992237026616862 0.7619298235824788 0.9264419577170246 0.828970350108056 0.7057219697572086 1.0 17.767378872455403 2.75067640241036 24.861338765529858 0.8406267262566873 0.9500280439141261 0.09195655921572876 0.13911307787951654 1551.1211089066255 3182866.1271780804 0.043208900910154294 0.04552088986945342 563.2178396407053 -2.75067640241036 0.10940131765743877 RVVNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 RVVNGK 6 1 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 CBX3 Chromobox protein homolog 3 0 89.45700000000002 0.080404 404580000.0 411740.0 445550.0 395200.0 379950.0 397550.0 234040.0 414870.0 434000.0 586660.0 459950.0 False True 409523.23758861487 460379.86240933783 450840.72486002115 428051.63104284904 448175.63603653916 217861.36567089992 394801.1531426942 466387.2838073459 442085.50384124904 430595.5972169939 0.951062296585072 1.0691699250638982 1.0470165690821611 0.9940919828475095 1.0408272609686855 0.505953537562789 0.9168722478686621 1.0831213482480526 1.0266837531514863 1.0 18.715974042651474 RVWGSPGGEGTGDLDEFDF ddPTM_BT-474_Trastuzumab_2h_R1 3 RVWGSPGGEGTGDLDEFDF 19 1 Q13438-4;Q13438;Q13438-8;Q13438-6;Q13438-5;Q13438-3;Q13438-2;Q13438-7;B4E321 Q13438-4 OS9 Protein OS-9 0 ;; 150.22 1.595e-06 263804000.0 202321.0 277623.0 270812.0 278018.0 286905.0 263547.0 268801.0 265698.0 283725.0 259124.0 False True 201231.72621597638 286863.5137283526 308939.97565989866 313215.0502941725 323440.6511308349 245328.61621290664 255798.06871046207 285525.73394710635 213804.77547021836 242586.48447278244 0.8295257118438272 1.1825205940545214 1.2735250949009935 1.2911479836763717 1.333300376703897 1.011303728425282 1.0544613368151676 1.1770059431284663 0.8813548534448822 1.0 17.888139648443207 2.707542652232696 24.772270008450736 1.0498102346245417 1.1931807643249912 0.2112757114824637 0.14716873329217947 1089.355673398988 870004.8490701079 0.04909998557131934 0.046297548577240374 509.96767924287155 -2.707542652232696 0.1433705297004495 RVYATILNAGTNTDGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 RVYATILNAGTNTDGFK 17 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 248.75 1.0424e-20 2950200000.0 2357300.0 2293200.0 2135100.0 2043800.0 2100500.0 2810800.0 2598600.0 2363800.0 3401400.0 2764900.0 False True 2344608.5587206515 2369527.7757313265 2435703.5213781167 2302544.870444462 2367986.2243610877 2616496.0119114914 2472895.7903839867 2540198.759133185 2563170.5464248857 2588441.7148500145 0.9057992479681963 0.915426359472277 0.9409922222333107 0.8895486644472818 0.9148308075765573 1.0108382958366526 0.9553608165858496 0.9813621626324218 0.9902369181117169 1.0 21.30365240205129 2.7540041968106537 24.62245814045652 0.9833245105119616 0.9136532789109321 0.8074961752229882 0.018064737997473938 289.094756567147 460917.5311531607 0.005398319051972432 0.005706552603716541 567.5500899100878 -2.7540041968106537 -0.0696712316010295 RWDDDVVFK ddPTM_BT-474_Trastuzumab_2h_R1 3 RWDDDVVFK 9 1 Q9P013 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog 0 ;; 195.3 5.0374e-05 808080000.0 1640140.0 1800350.0 1625620.0 1609870.0 1633070.0 1949830.0 1925580.0 1718910.0 2385150.0 2023480.0 False True 1631309.668476683 1860273.561415441 1854493.1658576606 1813679.3769363102 1841031.7845357605 1815042.8415061159 1832432.3389700598 1847183.7926481222 1797361.7418725574 1894339.7740116145 0.8611494573764259 0.9820168414011432 0.9789654376154646 0.9574203117192166 0.9718593305133617 0.9581400688549274 0.9673197829181117 0.9751069042573969 0.9488064213878126 1.0 20.853263689105134 4.742481267113179 24.959893678896453 0.9698246297659928 0.8611494144425418 0.8502200983543068 0.013831976844369445 125.95106536297781 801805.1772469198 0.0030311774925929 0.023115543692885796 55268.9567682017 -4.742481267113179 -0.10867521532345104 RWDDSQK ddPTM_BT-474_Trastuzumab_2h_R1 6 RWDDSQK 7 1 Q16543;K7EKQ2 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ;;;;; 168.08 0.0017035 4348290000.0 3919190.0 3827850.0 3600410.0 3376290.0 3260810.0 3839690.0 4317980.0 3682360.0 5564000.0 4102070.0 False True 3898089.5165029457 3955257.673265809 4107316.4326752736 3803727.9678211915 3676054.8251649025 3574261.267958032 4109102.8111145487 3957156.4018452032 4192826.7537802267 3840272.380641183 1.0150554778752723 1.029941962763961 1.0695377893975073 0.9904839008284382 0.9572380448053369 0.9307311861460367 1.0700029591204365 1.0304363882606955 1.0918045227511128 1.0 21.8727772105477 -0.7261411625225995 5.336839135239471 0.9999999968416753 1.019853471920717 0.016019937415009178 0.04808669040408603 1.8103039844046129e-09 4.0705082086068886e-10 0.048594969951950166 0.0114539424694176 0.18787060653345486 0.7261411625225995 0.019853475079041782 RWDQTADQTPGAT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 RWDQTADQT(0.004)PGAT(0.996)PK;RWDQTADQT(0.085)PGAT(0.915)PK;RWDQTADQTPGAT(1)PK;RWDQTADQT(0.008)PGAT(0.992)PK;RWDQTADQTPGAT(1)PK 167.97 7.5037e-07 3654180000.0 2740830.0 2250960.0 1824769.0 2027510.0 1905158.0 2530500.0 2349940.0 2260530.0 3545060.0 2263950.0 True False 2726073.6758148386 2325881.842865946 2081680.6140235197 2284192.5581147145 2147768.5785438367 2355572.4911562656 2236264.4245574363 2429222.227338756 2671427.4643702586 2119462.772734888 1.2862097465846023 1.0973921659707668 0.982173709678979 1.0777224245214103 1.0133551795167526 1.1114007386488365 1.0551090839268817 1.146149986019412 1.2604266980934669 1.0 21.01526719574906 1.6368474977774703 6.407620704023171 1.1538523725897674 1.0829806726645563 0.03427263525531077 0.09653115908303099 0.3195842566937388 27.299010523756245 0.049280048899346014 0.02426159828821372 43.3358678050948 -1.6368474977774703 -0.07087169992521103 RWLPAGDALLQMITIHLPSPVTAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RWLPAGDALLQMITIHLPSPVTAQK 25 1 P13639 P13639 EEF2 Elongation factor 2 0 117.43 0.00066186 31235000.0 87726.0 99766.0 98847.0 101650.0 101900.0 95955.0 123730.0 100210.0 158860.0 114830.0 False True 87253.69296327488 103086.65100017955 112763.79840647403 114518.87957759082 114876.36099138057 89321.8567037739 117744.70720549964 107688.17905606929 119711.08161494002 107501.4510890908 0.8116513040457864 0.9589326465439753 1.0489514072979547 1.0652775233953298 1.0686028870082682 0.830889776824959 1.0952848172060472 1.0017369808973438 1.1135764252682563 1.0 16.713996608343695 4.661388713493428 2.6469230696908257 1.0258845597666681 0.7871442125425695 0.43502627404590155 0.0748268603418252 0.3546486796666795 3.631297928717401 0.018007004483095022 0.17174606979452783 45855.21282948885 -4.661388713493428 -0.23874034722409865 RWQS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 8 RWQSPVTK 8 1 A9Z1X7 A9Z1X7 SRRM1 1 RWQS(1)PVTK;RWQS(0.999)PVT(0.001)K;RWQS(1)PVTK;RWQS(1)PVTK;RWQS(1)PVTK;RWQS(1)PVTK;RWQS(0.995)PVT(0.005)K;RWQS(0.996)PVT(0.004)K 116.84 0.0013442 6868080000.0 8644530.0 8237280.0 7770470.0 7283690.0 7248250.0 8887590.0 9248350.0 7838380.0 11137720.0 9081760.0 True False 8597988.81097758 8511452.885259094 8864484.633863987 8205804.407186442 8171271.673756375 8273211.822436497 8800971.97837212 8423319.71808715 8392978.143801773 8502154.301514087 1.011271791367798 1.0010936738402114 1.0426162969408088 0.9651441406709274 0.9610824955624732 0.973072415418664 1.0351461131215671 0.9907276931667897 0.987159000667293 1.0 23.019397011318098 3.7352530986713437 24.999647507069326 0.9884880348461031 1.0166038952917142 0.292508434940875 0.021898790989388656 417.52945607771215 3155870.3773424174 0.006190467089138107 0.010040946752436887 5435.67019858619 -3.7352530986713437 0.028115860445611096 RWS(ph)APESR ddPTM_BT-474_Trastuzumab_2h_R1 2 RWSAPESR 8 1 P54253 P54253 ATXN1 Ataxin-1 1 RWS(1)APESR;RWS(0.923)APES(0.077)R 119.03 0.001086 755310000.0 545660.0 665420.0 598830.0 615640.0 581500.0 562650.0 552310.0 558200.0 623400.0 539840.0 True False 542722.2271885251 687568.1024451153 683140.0588763325 693579.9608770087 655550.5781794684 523755.32983563485 525592.655270908 599855.7184821666 469771.4231320263 505386.9490197229 1.073874638514548 1.3604785477321117 1.3517168581448127 1.372374103095293 1.2971260525247266 1.036345182343035 1.0399806648952397 1.1869236426577314 0.9295282041675621 1.0 18.94702888342145 2.743250082835991 23.756055620917365 1.0614229482494237 1.3028489188111831 0.6072196217505889 0.10050525803254222 143.00483057304479 724438.7828840254 0.0311523664281173 0.03203446344709372 553.6688404480157 -2.743250082835991 0.2414259705617594 RWS(ph)GNEPTDEFSDLPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 RWSGNEPTDEFSDLPLR 17 1 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 RWS(1)GNEPTDEFSDLPLR;RWS(1)GNEPTDEFSDLPLR 142.62 3.55e-07 163948000.0 78970.0 84515.0 84552.0 87457.0 76107.0 90697.0 88611.0 79582.0 87690.0 79468.0 True False 78544.83429439188 87328.03068460367 96456.18666084141 98529.04723283173 85798.7753284692 84427.32986777322 84324.54740310779 85520.81294920768 66079.97448579951 74396.2842040222 1.0557628668522316 1.1738224780839568 1.2965188744685525 1.3243812952086227 1.153266943993831 1.13483261658932 1.133451062849572 1.1495307039082476 0.8882160606917372 1.0 16.182942945851813 1.3392494360546576 4.482428953988452 0.9456012653628842 1.1844635140675175 0.5842119464817943 0.07877643127442546 0.15215852178710504 4.7105358152968195 0.06323597107783471 0.0214187576870296 21.839839179206283 -1.3392494360546576 0.23886224870463324 RYDEIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RYDEIVK 7 1 A0A2U3TZH3;Q05639;A0A2R8Y488 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ; 150.05 0.0031664 1601470000.0 1619450.0 1671360.0 1573250.0 1378980.0 1382300.0 1579880.0 1619700.0 1574810.0 2351900.0 1745060.0 False True 1610731.0611378085 1726990.207241543 1794749.9250658622 1553558.7266099942 1558327.7114660013 1470666.6142374878 1541348.9231451345 1692330.3189231453 1772305.7588453833 1633688.7767789697 0.9859473138534836 1.0571108963890474 1.098587411859709 0.950951459477513 0.9538706108628888 0.9002122283885053 0.9434776960297816 1.0358951735347017 1.084849075317586 1.0 20.639701740712972 3.7270714351568746 24.893315540251862 0.979492540183646 1.0482047788206452 0.2310984940205496 0.05499913625765177 1045.6036081421105 2265481.8769603046 0.016016725109272274 0.025068627374793682 5334.226285743652 -3.7270714351568746 0.06871223863699927 RYDFQNPSR ddPTM_BT-474_Trastuzumab_2h_R1 3 RYDFQNPSR 9 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 ;; 156.16 0.00011479 1241850000.0 339575.0 525060.0 470957.0 509100.0 496690.0 456180.0 509330.0 416856.0 489670.0 443092.0 False True 337746.7659303293 542536.3046945275 537263.6519683728 573552.007800801 559940.5273877219 424645.3503322131 484691.7620704523 447963.9114718779 368997.3897418342 414813.489209853 0.814213555527516 1.3079041998560947 1.2951932999858946 1.3826744373557307 1.349860942213597 1.0237018838058716 1.1684570889767958 1.079916451909919 0.889550121537054 1.0 18.66210328396822 1.7746529133242122 1.1518948358816021 0.953566201036365 1.229269362442988 0.25973176973309964 0.16343589196887795 0.620942918998704 1.533773624566369 0.1369623180134061 0.0549377762007078 59.518628254436045 -1.7746529133242122 0.275703161406623 RYDLEQGLGDLLTER ddPTM_BT-474_Trastuzumab_2h_R1 2 RYDLEQGLGDLLTER 15 1 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 0 ; 197.88 1.3152e-08 231370000.0 88567.0 124369.0 107031.0 134277.0 120440.0 109905.0 128356.0 105537.0 127604.0 118178.0 False True 88090.1651127188 128508.54698235203 122100.0344698707 151276.45443226895 135777.32009619128 102307.52603854172 122146.92991246337 113412.70684602726 96157.70400599793 110635.77886272401 0.7962176975499071 1.1615460053099496 1.1036215926257587 1.3673375465632285 1.2272460273874213 0.9247236932772361 1.1040454649306741 1.0250997282420622 0.8691374977827891 1.0 16.755458493286707 2.736600844625946 24.999020858988914 0.999324260070856 1.1444673193181125 0.19482654287094692 0.14625543400248076 316.1525121919693 4032850.0763601563 0.04745257684503923 0.046831767215754105 545.2564913646872 -2.736600844625946 0.14514305924725657 RYDQDLCYTDILFTEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 RYDQDLCYTDILFTEQER 18 1 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ; 200.26 2.4583e-15 601360000.0 181374.0 230340.0 199723.0 210903.0 226880.0 213610.0 199872.0 199626.0 232490.0 227295.0 False True 180397.50253654568 238006.72765652978 227842.26237656354 237603.29817562827 255771.82317688354 198843.64348385317 190203.42777481303 214523.10580028864 175195.9547063918 212788.83850296002 0.8477770911561991 1.1185113341986637 1.0707434843834354 1.1166154195269178 1.2019983048750258 0.9344646311469346 0.8938599839773419 1.0081501798192507 0.8233324451552695 1.0 17.6990629530074 2.6868375472996147 23.541328422389995 0.9355879978735051 1.0762670778448702 0.336181544186847 0.09757923501482807 207.8786565854337 94613.72838482713 0.030882894255601524 0.029116726519957923 486.2252936700735 -2.6868375472996147 0.14067907997136508 RYDVVADCSDNVPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 RYDVVADCSDNVPTR 15 1 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase 0 81.346 0.022887 225240000.0 80884.0 108210.0 101570.0 125460.0 103470.0 102530.0 113450.0 79693.0 103710.0 96510.0 False True 80448.52953105717 111811.70443567362 115870.17313773367 141343.22313629647 116646.29118526155 95442.34242965902 107961.99007891308 85640.09633285427 78152.06014280146 90350.64917363212 0.8904034477544763 1.2375307256597408 1.2824498130064255 1.5643852526689537 1.2910398790947872 1.0563548054451928 1.1949221291308734 0.947863652515376 0.8649861496026673 1.0 16.46324734650778 1.9539257494987963 1.4032411812593082 0.9184085836033642 1.2562760675560514 0.36703366423162165 0.16625576640739015 0.4473564274260291 1.6368153778772094 0.1239981004217739 0.05650564097528334 89.93438092855165 -1.9539257494987963 0.3378674839526872 RYEDDGIS(ph)DDEIEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 RYEDDGISDDEIEGK 15 1 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 RYEDDGIS(1)DDEIEGK;RYEDDGIS(1)DDEIEGK 215.98 1.3889999999999998e-12 1816970000.0 1464050.0 1372980.0 1034030.0 1012750.0 1062150.0 1485170.0 1393190.0 1283670.0 1863240.0 1390820.0 True False 1456167.7174712478 1418678.809316063 1179612.436050121 1140964.0461604025 1197408.5066437174 1382503.6936141287 1325796.0771973634 1379463.9737441821 1404069.4681368552 1302056.6768590917 1.1183597022703444 1.0895676313709286 0.9059608978740166 0.8762783267720052 0.9196285598966294 1.0617845737323022 1.0182322327132007 1.0594500210788194 1.0783474276433538 1.0 20.312360817861443 2.7128167061011146 24.62405614200647 1.0460786810283724 0.9778440017127332 0.14453946071935297 0.07447418983482597 1303.376743104913 1246678.7497169469 0.02681187255505081 0.02528621938759433 516.1984618342406 -2.7128167061011146 -0.0682346793156392 RYEDDGIS(ph)DDEIEGKR ddPTM_BT-474_Trastuzumab_2h_R1 1 RYEDDGISDDEIEGKR 16 2 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 RYEDDGIS(1)DDEIEGKR 125.45 6.0649e-05 670610000.0 218020.0 185560.0 181340.0 211020.0 187300.0 290950.0 256000.0 234100.0 374480.0 271210.0 True False 216846.20454429943 191736.2524266112 206871.09576446423 237735.11036363203 211151.54478592364 270837.3113226303 243616.30198503117 251569.73073571338 282194.4217749134 253901.1456054374 0.8540576058734237 0.7551610370619182 0.8147702337898943 0.9363294119715103 0.8316289565469441 1.0667037782630242 0.9594927246354812 0.9908176276079232 1.1114342202041252 1.0 17.95390737889665 3.0804894428753813 0.868815298546675 1.0289257423816098 0.7959701723759431 0.682808166300842 0.06178874499505595 0.3396218972761933 0.5676853314909368 0.03133190615869826 0.04382405625447251 1203.6201310216695 -3.0804894428753813 -0.2329555700056667 RYEEILDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 RYEEILDAR 9 1 Q13439-5;Q13439-3;Q13439-4;Q13439;H0Y6I0 Q13439-5 GOLGA4 Golgin subfamily A member 4 0 72.2 0.076039 154600000.0 152960.0 168050.0 177190.0 177100.0 168770.0 174650.0 179150.0 151170.0 197550.0 177410.0 False True 152136.48035545347 173643.44266162967 202136.81183691078 199520.84184152773 190261.85912183815 162576.8565818779 170483.83008054018 162451.07302570622 148866.44953437868 166087.54191165743 0.9160017578944929 1.0454934829127114 1.2170498130704355 1.2012992639005615 1.1455516586731058 0.9788624403168849 1.0264697045803781 0.9781051074385492 0.8963131600415959 1.0 17.3415843364407 2.7297118551355557 23.827403489971427 0.9791232385068657 1.1133350272798397 0.36253265627635123 0.0852123308739203 400.23196121009926 1077717.6060699164 0.029547411738004736 0.028281779492470023 536.6756057261479 -2.7297118551355557 0.13421178877297402 RYEEIVK ddPTM_BT-474_Trastuzumab_2h_R1 6 RYEEIVK 7 1 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;; 164.53 0.0019148 6909780000.0 5277530.0 5559420.0 4889250.0 4918460.0 4934360.0 5952660.0 6187010.0 5613740.0 8296950.0 6831740.0 False True 5249116.364868701 5744461.933959639 5577613.901877174 5541136.531698929 5562721.497756915 5541166.625254405 5887720.689626587 6032665.784794116 6252277.845934015 6395732.504253121 0.820721686120874 0.898171074249839 0.8720836742574986 0.866380282166915 0.8697551834848848 0.8663849874224047 0.9205701904686117 0.9432329730460791 0.9775702535677172 1.0 22.608678169984564 1.688166978187502 1.0635984763771607 0.9978513977048874 0.8651910128894278 0.8751574606967999 0.018839678746575505 0.1507146785334366 0.3206318539453128 0.015534087418114252 0.006053128938292033 48.77159718207497 -1.688166978187502 -0.1326603848154596 RYEPS(ph)DKDRQSPPPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYEPSDKDRQSPPPAK 16 3 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 RYEPS(0.5)DKDRQS(0.5)PPPAK 134.29 0.00016078 1449100000.0 401960.0 308960.0 280760.0 248830.0 286580.0 397550.0 382360.0 359060.0 526840.0 380520.0 True False 399795.8920219545 319243.546829736 320288.5675903324 280331.85248688556 323074.2643072605 370068.30423203844 363863.7860429544 385854.88046973594 397007.3412943161 356234.88782043743 1.1222816902298303 0.8961602519701911 0.8990937680190829 0.7869298097164158 0.9069135992938127 1.0388322898305622 1.0214153595937587 1.0831473661395812 1.114453847357113 1.0 18.44246928795888 2.68835507477802 4.399347358757305 1.0584660310981633 0.9117023376730224 0.37430880671289657 0.08305611218986089 0.22211109969737175 9.36344622973628 0.02797691788686441 0.026818291068067754 487.9272514577689 -2.68835507477802 -0.14676369342514084 RYEPSDKDRQS(ph)PPPAK ddPTM_BT-474_Trastuzumab_2h_R1 4 RYEPSDKDRQSPPPAK 16 3 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 RYEPS(0.003)DKDRQS(0.997)PPPAK;RYEPS(0.007)DKDRQS(0.993)PPPAK;RYEPSDKDRQS(1)PPPAK;RYEPS(0.017)DKDRQS(0.983)PPPAK 162.42 4.4677e-08 4812740000.0 1246890.0 1055830.0 900000.0 899550.0 893450.0 1261760.0 1152000.0 1192000.0 1702050.0 1213900.0 True False 1240176.8827825019 1090972.6632872857 1026712.1770597644 1013432.9377670607 1007225.561606958 1174537.5010635564 1096273.3589326402 1280953.0928533534 1282602.5838015168 1136427.862727925 1.091293977785386 0.9600016851650163 0.9034556532213186 0.8917705830745627 0.8863084007718495 1.0335345863873415 0.9646660337076773 1.1271750146802142 1.1286264846786742 1.0 20.116074678127784 1.773485591082772 7.700970081286888 1.0954973079412453 0.9562492504011101 0.40022987484200034 0.06882079949220234 0.178130527442244 28.724328251150997 0.03300354597958916 0.018424841246255555 59.35886539239458 -1.773485591082772 -0.13924805754013525 RYEVPLETPHVHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RYEVPLETPHVHSR 14 1 P10253;I3L0S5;I3L3L3 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase 0 104.95 0.00041803 303700000.0 30786.0 44794.0 43701.0 44839.0 48566.0 45832.0 38318.0 8466.3 38739.0 24572.0 False True 30620.25159664616 46284.94121145521 49853.720944098604 50515.61280255373 54750.59222676542 42663.74171692315 36464.41195102505 9098.0982970003 29192.292526005072 23003.793922852416 1.331095718355719 2.012056853173026 2.167195598747429 2.1959687594127915 2.380067931854281 1.8546393634025802 1.5851477401212761 0.3955042514948838 1.2690207808288911 1.0 14.489584198210444 1.980293194378484 3.859276390945234 0.8397626583166725 2.016652515968816 0.6839349354727694 0.33304058667865305 0.11786446876307029 3.742911282330774 0.15321290768896306 0.09330485502201073 95.56375239721571 -1.980293194378484 1.1768898576521432 RYGEDYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 RYGEDYSR 8 1 Q9H201;I6L9I8;Q9H201-2 Q9H201 EPN3 Epsin-3 0 79.48899999999998 0.044743 99030000.0 138130.0 146710.0 137720.0 151380.0 139590.0 130300.0 146050.0 140840.0 161750.0 135690.0 False True 137386.3234276858 151593.15366193233 157109.77891630062 170544.69247865898 157365.95908524835 121292.6676932074 138985.00353481932 151350.19597102894 121888.87983895611 127030.14802994643 1.0815253351928549 1.1933635913436498 1.2367912763453848 1.3425528909755684 1.2388079642964005 0.9548337113219261 1.0941103800182506 1.1914509926836363 0.9595271809824365 1.0 16.954811406486453 2.764496300633877 24.85967529623329 1.0677533200683584 1.2251017383433607 0.4837334993325729 0.08988372361021096 728.9892159483014 698743.7693799393 0.029125702828217172 0.03088196617332731 581.4284796183466 -2.764496300633877 0.15734841827500223 RYIGIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 RYIGIVK 7 1 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ; 132.09 0.005455399999999999 4718100000.0 5627900.0 6618600.0 5956500.0 5957200.0 6525400.0 7563500.0 8191300.0 7398100.0 10410800.0 8353500.0 False True 5597600.011718467 6838896.099971818 6795123.425173866 6711380.909194518 7356371.010923992 7040653.047563884 7795055.525195242 7950183.788790606 7845197.837572826 7820372.478208836 0.7157715348362194 0.874497489605276 0.8689002274646397 0.8581919758803714 0.9406676000947825 0.9002963819411914 0.9967626921755788 1.0165991211983167 1.0031744471805102 1.0 22.898805892926777 6.7023970175786145 0.25841134804976257 1.0327385692601097 1.5782155254225592e-14 0.8453264408162514 0.03506758965160944 9.497176703972997 0.23512662056494338 0.04516720458282593 3.761643428943407 5039611.027592502 -6.7023970175786145 -1.0327385692600939 RYLSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYLSPK 6 1 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;J3KS25;Q14240;Q14240-2;E7EQG2 P60842;Q14240 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 82.38600000000002 0.095213 386300000.0 420560.0 435660.0 465980.0 320250.0 271390.0 341060.0 402600.0 320290.0 784450.0 398300.0 False True 418295.75168860896 450160.679737969 531585.9336292327 360793.6171640277 305949.9078454448 317483.32496888196 383124.6999186458 344191.6661996656 591132.8085914635 372880.15299821395 1.121796771228563 1.2072529903197213 1.4256214211320035 0.9675860038755022 0.8205046725748105 0.851435300098696 1.0274741008285333 0.9230624462903881 1.585315828258349 1.0 18.508352484385433 3.714628557147465 24.489574886806775 1.0018054532753986 1.247126678643045 0.18650889955574435 0.21287484331798978 883.05709111043 903628.5632480225 0.05650897007577773 0.08759850746811176 5183.565099646115 -3.714628557147465 0.24532122536764644 RYPS(ph)SIS(ph)SSPQKDLTQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYPSSISSSPQKDLTQAK 18 2 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 2 RY(0.004)PS(0.534)S(0.467)IS(0.857)S(0.087)S(0.046)PQKDLT(0.004)QAK 109.08 0.0019948 0.0 325950.0 257050.0 220900.0 221860.0 276150.0 368240.0 360890.0 323950.0 750190.0 380860.0 True False 324195.1214164495 265605.75385999354 252000.79990277978 249947.4532521814 311316.06563071447 342784.4355437199 343432.3719663195 348124.79398476845 565315.7265309831 356553.18872934894 0.9092475727724828 0.744926037000355 0.7067691661960359 0.7010102872531329 0.8731265782256882 0.9613837328598944 0.9632009552073053 0.9763614658036944 1.5855018112321548 1.0 18.44375778081792 1.9086879646395676 1.097075056959837 1.2377659626562538 0.7812887691313647 0.525026855167177 0.16562319254411081 0.3862313044155034 0.8551864538520478 0.13017037828493436 0.05704705668073381 81.03786013591544 -1.9086879646395676 -0.45647719352488914 RYPSS(ph)ISS(ph)SPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYPSSISSSPQK 12 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 2 RYPS(0.443)S(0.542)IS(0.016)S(0.645)S(0.354)PQK 79.837 0.076851 636180000.0 1725200.0 1159100.0 1012100.0 989480.0 1097100.0 1549900.0 1379600.0 1355300.0 2470400.0 1538000.0 True False 1715911.7148877406 1197679.9428092546 1154594.882669097 1114748.0665463305 1236809.1819788385 1442759.0610721598 1312863.4774162062 1456439.3680739538 1861603.0216640339 1439843.5232519538 1.1917348567240653 0.8318125709273175 0.801889138662367 0.7742147313540154 0.8589886067518276 1.00202489907627 0.9118098294813611 1.0115261447191966 1.2929203705827121 1.0 20.457480602870437 1.51712073912354 3.7201395779727746 1.1504094850764468 0.9005590631518858 0.3333554069814506 0.13125817584558266 0.20315745223223913 6.054473015859025 0.0857456258487741 0.033763527618393116 32.894306832021506 -1.51712073912354 -0.24985042192456097 RYPSS(ph)ISSS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 RYPSSISSSPQK 12 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 2 RYPS(0.366)S(0.633)IS(0.005)S(0.012)S(0.985)PQK;RYPS(0.018)S(0.982)IS(0.021)S(0.016)S(0.963)PQK 221.34 1.4458e-07 441100000.0 1641480.0 1129140.0 994340.0 906420.0 1016170.0 1504790.0 1221460.0 1345810.0 2301690.0 1321160.0 True False 1632642.454065571 1166722.7423204565 1134334.429041783 1021172.6790626644 1145573.2261885293 1400767.4091946415 1162373.313369672 1446241.1760847087 1734469.3405658524 1236842.4376980173 1.3200084378606927 0.943307495570684 0.9171212067666276 0.8256287526511845 0.9262078913791507 1.1325350477153076 0.9397909369386245 1.169301062127541 1.4023365367330107 1.0 20.238230295321593 1.616457537982973 4.925003091572605 1.226021690948921 0.9912878077901393 0.2260348035082217 0.15905343973180794 0.1901735580844486 10.095215455682583 0.08686781332159511 0.040368838291640875 41.34828851540978 -1.616457537982973 -0.23473388315878174 RYPSS(ph)ISSSPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYPSSISSSPQK 12 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 RYPS(0.001)S(0.323)IS(0.031)S(0.323)S(0.323)PQK 214.11 8.1691e-10 377760000.0 452320.0 398890.0 437070.0 302080.0 178870.0 355460.0 446450.0 302950.0 794760.0 403210.0 True False 449884.7593774762 412166.81251590303 498605.65691945655 340323.2970270399 201648.03425444788 330887.8868628359 424853.50789537875 325557.66734892933 598902.0472383843 377476.79259455117 1.1918209760267264 1.0918997421878927 1.3208908910461423 0.9015740933048091 0.5341998189304278 0.876578092625269 1.1255089484447194 0.862457437744025 1.5865930276716813 1.0 18.526028424204462 3.72670652418078 24.040502258385036 0.9583045766305502 1.1905734629329905 0.12702027856910725 0.25497294123427233 847.1211027963144 1717990.930326609 0.06853956085093901 0.10719012431224614 5329.74614551376 -3.72670652418078 0.23226888630244025 RYPSSISS(ph)SPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYPSSISSSPQK 12 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 RYPSSIS(0.006)S(0.497)S(0.497)PQK 186.75 6.9587e-06 944470000.0 418710.0 368310.0 418020.0 250630.0 165290.0 330630.0 435890.0 275690.0 709940.0 349760.0 True False 416455.71188305464 380568.9757019038 476873.58250502544 282359.73230232694 186338.7017494143 307774.32631930296 414804.3354384963 296263.38772545394 534984.7997086146 327438.0173553988 1.2718612067304227 1.1622626437077312 1.45637817610968 0.8623303261571358 0.5690808393429883 0.9399468296476001 1.2668178814076765 0.9047922721932801 1.6338505956928822 1.0 18.32086231080579 3.7350726138900607 24.99675574825574 1.007757363157588 1.28337687136911 0.1719934090810077 0.2706810351914977 534.373654011778 3829591.1227397854 0.0726467109841973 0.11771873905675076 5433.411703574893 -3.7350726138900607 0.27561950821152204 RYPSSISSS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 4 RYPSSISSSPQK 12 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 RYPSSIS(0.001)S(0.127)S(0.872)PQK;RYPS(0.267)S(0.045)IS(0.003)S(0.254)S(0.43)PQK;RYPSSIS(0.002)S(0.475)S(0.523)PQK;RYPSSIS(0.006)S(0.098)S(0.897)PQK 168.93 4.789100000000001e-05 4623560000.0 2441570.0 2160470.0 2433280.0 1636410.0 1078780.0 1824060.0 2326070.0 1689590.0 4548930.0 2164200.0 True False 2428424.858403926 2232379.937918307 2775864.6735510947 1843579.3382151031 1216156.238569988 1697967.0255753824 2213549.107649693 1815675.7853641752 3427907.1540390863 2026078.9031351595 1.198583556961269 1.1018228038720095 1.3700674091496214 0.9099247494075102 0.6002511731838799 0.8380557257409591 1.0925285803156242 0.8961525548460102 1.6918922302259474 1.0 20.950258928529973 -0.132524628010259 7.6337277177425955 0.9999999907520261 1.049920346396772 0.0 0.28836858395894055 18891215.957007244 2474703.6354009877 0.27826440981512357 0.06748903254213805 0.7370133795323291 0.132524628010259 0.04992035564474584 RYPSSISSS(ph)PQKDLTQAK ddPTM_BT-474_Trastuzumab_2h_R1 4 RYPSSISSSPQKDLTQAK 18 2 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 RYPSSISSS(1)PQKDLTQAK;RYPSSISS(0.002)S(0.998)PQKDLTQAK;RYPSSISS(0.022)S(0.978)PQKDLTQAK;RYPSSISS(0.082)S(0.917)PQKDLTQAK 290.56 1.9234999999999997e-49 12839990000.0 7041710.0 6106670.0 5824050.0 6576730.0 5912540.0 8387240.0 8735580.0 7807130.0 13559440.0 9265530.0 True False 7003798.215767525 6309926.819390024 6644025.616449913 7409343.343672685 6665466.922629807 7807449.8402392855 8313006.622243731 8389737.684402857 10217897.699187232 8674195.942780664 0.8074290991312719 0.727436509506294 0.7659529090969618 0.8541821504319732 0.7684247585134762 0.9000776431315514 0.9583604840241656 0.9672063831328879 1.1779648242430303 1.0 23.048298602159168 2.1819877956825278 0.9608507805277329 1.0708732293947303 0.7739242928316399 0.7972518872822405 0.058774708792270126 0.23298052926976637 0.40524878596294683 0.042994623208699914 0.023371788499168936 152.0504800697665 -2.1819877956825278 -0.2969489365630904 RYS(ph)DFEWLK ddPTM_BT-474_Trastuzumab_2h_R1 2 RYSDFEWLK 9 1 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 RYS(1)DFEWLK;RYS(1)DFEWLK 140.01 6.7455e-05 288010000.0 580650.0 502130.0 428740.0 424900.0 459080.0 585370.0 514830.0 485000.0 750360.0 586410.0 True False 577523.84491628 518843.09350600454 489102.865325115 478692.29643402196 517541.1168196562 544904.7497127622 489925.7060584122 521193.16278009827 565443.8323088667 548984.8117491398 1.051985105154751 0.9450955334317909 0.8909223986848874 0.8719590891938224 0.9427239255867577 0.9925679874031889 0.8924212393006697 0.949376288060696 1.029980830448271 1.0 19.066406710521015 1.3040652679203184 5.998239741996676 1.0146430555256378 0.9374900632995046 0.24963442564611837 0.05023711246362992 0.2479552816107654 15.87034184229139 0.03612211525626835 0.01268352659379711 20.140269050329 -1.3040652679203184 -0.07715299222613325 RYS(ph)DFEWLR ddPTM_BT-474_Trastuzumab_2h_R1 3 RYSDFEWLR 9 1 O60493-4;O60493;O60493-3 O60493-4 SNX3 Sorting nexin-3 1 RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR 218.02 3.3376e-07 789833000.0 163239.0 178000.0 167095.0 167500.0 157419.0 171074.0 169905.0 154355.0 205422.0 177606.0 True False 162360.13936155778 183924.62239672785 190620.52358422353 188705.48282583794 177465.37655448637 159248.05704487953 161686.0460498699 165873.75389880853 154798.50061377452 166271.0330238532 0.9764788033659816 1.1061735712578513 1.1464445737633515 1.1349269887483426 1.0673258794815284 0.9577618791965636 0.9724246196670617 0.9976106534143703 0.9310010156222892 1.0 17.343177325245392 2.8456531877209383 4.279227239581417 0.9739625711157209 1.096427209215015 0.5993529246343812 0.04690049576534564 0.16032990381292073 4.977241418862085 0.014956673509109718 0.015920690492808927 700.8953645227207 -2.8456531877209383 0.12246463809929398 RYS(ph)DHAGPAIPSVVAYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 RYSDHAGPAIPSVVAYPK 18 1 H0YIY6;P27448-6;P27448-7;J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 H0YIY6;J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 RY(0.447)S(0.553)DHAGPAIPS(0.001)VVAYPK;RY(0.45)S(0.541)DHAGPAIPS(0.009)VVAYPK 123.03 1.6385e-05 487020000.0 841010.0 947240.0 948680.0 892960.0 901580.0 1188000.0 1155840.0 1065500.0 1405200.0 1209090.0 True False 836482.0956049958 978768.310781329 1082245.8979256186 1006008.6444427475 1016390.8689166727 1105876.3562511927 1099927.603462415 1145013.02049937 1058907.288715309 1131924.8410459727 0.7389908457455812 0.8646937281426592 0.9561110938474966 0.8887592249615528 0.8979314103376872 0.9769874431144127 0.9717320122120564 1.0115627636913622 0.9354925789390834 1.0 20.110346736813707 6.1034481153970175 0.4957641603025067 0.9792774715395034 6.10474124830846e-22 0.7849500397200246 0.03572836489007065 7.432612020510175 0.4889581952052236 0.020742242178899587 5.6851071508164726 1268960.534306669 -6.1034481153970175 -0.9792774715395034 RYS(ph)PPIQR ddPTM_BT-474_Trastuzumab_2h_R1 11 RYSPPIQR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RY(0.003)S(0.997)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RY(0.001)S(0.999)PPIQR;RYS(1)PPIQR;RY(0.007)S(0.993)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR 121.61 0.00087343 146902170000.0 4360239.0 5717968.0 5693937.0 6027558.0 5534253.0 5745171.0 6408712.0 5538388.0 6511162.0 6049555.0 True False 4336763.9576920895 5908287.108295346 6495593.837012384 6790646.224780558 6239007.315462525 5348020.851447839 6098698.116902706 5951690.635924421 4906573.370200785 5663467.220615395 0.7657436317289843 1.0432279164234923 1.146928830693677 1.1990263137856887 1.101623276418397 0.9443015458764712 1.0768488417665845 1.0508916895042446 0.8663550399551239 1.0 22.43325412246949 -0.4697997999346354 7.752899726299756 0.9999999987717049 1.0350681007796247 0.0 0.12454944511854 0.0 0.0 0.11999984107109254 0.02828423357682521 0.33900039174205326 0.4697997999346354 0.03506810200791988 RYS(ph)PS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 RYSPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RYS(1)PS(1)PPPK;RY(0.11)S(0.891)PS(0.998)PPPK;RY(0.102)S(0.9)PS(0.998)PPPK;RY(0.018)S(0.982)PS(1)PPPK 103.46 0.0022848000000000005 9500310000.0 4257570.0 4123210.0 3186730.0 3610980.0 3609160.0 4509840.0 4547380.0 4027550.0 5509460.0 4383940.0 True False 4234647.716180498 4260448.55231692 3635393.8844462875 4068129.697757879 4068765.132832696 4198085.375821445 4327405.856721448 4328106.232484502 4151727.405981669 4104153.1959201354 1.0317957235100494 1.038082242288654 0.8857841583643045 0.9912226721463354 0.9913774994747716 1.0228871037257299 1.0543967659451026 1.0545674164373284 1.011591723746771 1.0 21.96865315282014 2.6931052201006214 2.896093614400962 1.0376049788978163 0.9840596200922428 0.1844194079803384 0.04195757985489742 0.3951750664400384 6.612470339271524 0.014905928211654882 0.01445145740216509 493.29330370930245 -2.6931052201006214 -0.05354535880557354 RYS(ph)PS(ph)PPPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 RYSPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 RY(0.005)S(0.995)PS(1)PPPKR;RY(0.265)S(0.741)PS(0.995)PPPKR 72.681 0.025345 2129720000.0 1635640.0 1533360.0 1289840.0 1321160.0 1431640.0 1688020.0 1729360.0 1653660.0 2174520.0 1656710.0 True False 1626833.8959766887 1584396.9606643058 1471438.260509741 1488418.7205384134 1613950.868004908 1571331.1505716671 1645704.250003254 1777064.506315334 1638638.6830751565 1550977.3494192082 1.048908868066891 1.021547452809425 0.9487167952908842 0.9596650274072532 1.0406024746971847 1.0131232098006335 1.0610756182993375 1.145770766401449 1.056520060521048 1.0 20.564746186633577 2.1943897487076764 3.3805207311788337 1.0875681369999186 1.0020359742070293 0.2636190361640314 0.045691037119371274 0.2363900723266347 5.567587011845672 0.018785576300005685 0.013586216845647944 156.45510872009686 -2.1943897487076764 -0.08553216279288933 RYS(ph)PSPPPK ddPTM_BT-474_Trastuzumab_2h_R1 3 RYSPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 RY(0.181)S(0.791)PS(0.028)PPPK;RY(0.176)S(0.804)PS(0.019)PPPK;RY(0.025)S(0.969)PS(0.006)PPPK 70.488 0.032014 1139760000.0 1178150.0 1245320.0 1181840.0 1084260.0 1095000.0 1329430.0 1319320.0 1183030.0 1607200.0 1277690.0 True False 1171806.971304771 1286769.7233881645 1348232.799262568 1221527.2048283173 1234441.7594265155 1237529.6332416032 1255499.4513081664 1271313.7059046188 1211127.095376632 1196146.7303145584 0.9796515273645512 1.0757624384842606 1.127146666118474 1.0212185293580867 1.0320153273352062 1.0345968449173137 1.0496199333153715 1.0628409322076176 1.01252385236896 1.0 20.189962943904415 RYSPPIQR ddPTM_BT-474_Trastuzumab_2h_R1 4 RYSPPIQR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 0 ;;; 128.36 0.0018228 419580000.0 306522.0 428388.0 389831.0 373788.0 343481.0 381059.0 389611.0 327299.0 405110.0 386801.0 False True 304871.7196097955 442646.6356139857 444715.81632820563 421109.5224746528 387221.26937861036 354717.28824640036 370764.0274714445 351723.7133706463 305276.06869588536 362115.0290230035 0.8419195426170185 1.2223923343039884 1.2281064874000436 1.1629164456687096 1.0693322241370213 0.9795707435933758 1.0238846713205367 0.9713038266310204 0.8430361742221215 1.0 18.466088529314987 2.8260742296397274 2.332544829120075 0.963598716593124 1.129452553554884 0.29227237669344863 0.11050718489631907 0.37128284344863266 3.9691601290563012 0.03786484352229592 0.03978413368173245 669.9991159208809 -2.8260742296397274 0.16585383696176004 RYTCGEAPDYDR ddPTM_BT-474_Trastuzumab_2h_R1 1 RYTCGEAPDYDR 12 1 P21266;A0A0A0MTN3 P21266 GSTM3 Glutathione S-transferase Mu 3 0 98.339 0.0070781 167810000.0 129960.0 165500.0 180530.0 218050.0 151400.0 171400.0 230770.0 173690.0 203360.0 152940.0 False True 129260.30979991327 171008.5674531375 205947.05480511035 245655.1076428299 170679.89258189447 159551.5214322009 219606.77347299038 186651.62977994882 153244.6528843901 143179.23826147825 0.902786684504175 1.1943670711589938 1.4383863003168351 1.7157173807155415 1.1920715227594219 1.1143481650658253 1.5337892290775974 1.3036221734821636 1.0702994005634396 1.0 17.12746278387724 1.190324981423396 4.438114128839999 1.0128644771582103 1.31632627095775 0.1935572573476667 0.21550188058505274 0.3285862129501276 12.71498948193547 0.20390688777151567 0.054510085663824454 15.49976028069398 -1.190324981423396 0.30346179379953964 RYTMS(ph)RS(ph)LDGEVGTGQYATTK ddPTM_BT-474_Trastuzumab_2h_R1 1 RYTMSRSLDGEVGTGQYATTK 21 2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed 2 RY(0.182)T(0.166)MS(0.819)RS(0.817)LDGEVGT(0.014)GQY(0.001)AT(0.001)T(0.001)K 45.972 0.091712 657030000.0 234900.0 375920.0 369050.0 359700.0 363940.0 387800.0 378140.0 325960.0 330170.0 422490.0 True False 233635.3244998433 388432.2699515613 421009.03215989535 405237.98311912763 410285.60175861674 360992.29878300766 359847.9235649199 350284.79039134155 248804.027551333 395526.3264881126 0.5906947498900939 0.9820642620693808 1.0644273312930754 1.024553755289174 1.0373155319433527 0.9126884220028199 0.9097951247898413 0.885616877899199 0.629045428557107 1.0 18.59341419904586 1.5423681872007686 4.019674107581028 0.7995988680331104 0.9446117393432832 0.07547921180841832 0.15128562585220354 0.35957351212435873 12.900666527619002 0.09250741625816966 0.038519900318156525 34.86327544834823 -1.5423681872007686 0.14501287131017282 S(ph)AEDVSTVPTQPDNPFSHPDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SAEDVSTVPTQPDNPFSHPDK 21 0 A0A0U1RR07;Q9HCH5-7;Q9HCH5-13;Q9HCH5;Q9HCH5-15;Q9HCH5-12 A0A0U1RR07;Q9HCH5-12 SYTL2 Synaptotagmin-like protein 2 1 S(1)AEDVSTVPTQPDNPFSHPDK;S(1)AEDVSTVPTQPDNPFSHPDK;S(1)AEDVSTVPTQPDNPFSHPDK;S(1)AEDVSTVPTQPDNPFSHPDK 278.78 4.3663e-45 2200880000.0 2055240.0 1671380.0 1611350.0 1511650.0 1530280.0 2100700.0 1903630.0 1867370.0 2881610.0 2019690.0 True False 2044174.8161986317 1727010.8729294543 1838214.0738947212 1703024.735007033 1725152.087319823 1955483.553515895 1811544.144327203 2006722.6317127233 2171475.827095728 1890791.6550563988 1.0811211329032746 0.9133797837064924 0.9721928214454123 0.900694019064853 0.9123967110317952 1.0342141865744412 0.958087655761929 1.0613134590192945 1.1484479642633905 1.0 20.85055897186274 1.6678309224835746 4.1129723781242 1.083251849498015 0.9631833479854817 0.35616048549543833 0.06271196395606993 0.16598025068023423 6.561469122978317 0.03404850104028721 0.015876219833865557 46.54048689802517 -1.6678309224835746 -0.12006850151253334 S(ph)AEEGELAESK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEEGELAESK 11 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 S(1)AEEGELAESK;S(1)AEEGELAESK 237.27 1.4838e-15 1448770000.0 1491590.0 975530.0 909550.0 803150.0 820130.0 1079380.0 991350.0 953290.0 1471690.0 1013490.0 True False 1483559.445171228 1007999.9263296629 1037606.7340496756 904828.7076511746 924568.6942086448 1004765.0011872163 943394.6131752358 1024429.3405085355 1109011.719135661 948808.2005075575 1.563603101635936 1.0623853438349724 1.0935895510753555 0.9536476467711216 0.9744526804406349 1.0589758822170015 0.9942943291073731 1.0797011871951834 1.1688471058138028 1.0 19.855756953524416 4.741866666914116 4.7734950789082005 1.0402385132055707 1.5944422573136234 0.8689177219748516 0.060725506072062285 0.06160851746189475 3.9880478204439744 0.014923307382403123 0.11399183092875573 55190.79715732712 -4.741866666914116 0.5542037441080527 S(ph)AEKTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEKTEK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(1)AEKTEK;S(1)AEKTEK 113.93 0.0036457 316930000.0 1095720.0 656520.0 558200.0 642180.0 680500.0 2286990.0 881610.0 820090.0 1398100.0 783660.0 True False 1089820.7652659363 678371.871325279 636789.7080386227 723479.9221558007 767157.6413604965 2128895.764295384 838963.1562227457 881289.2801326403 1053556.9885801834 733646.1478749197 1.4854855687891395 0.9246581247516282 0.8679793520120682 0.9861428758965525 1.0456780064648963 2.901801870645605 1.1435528676227462 1.2012456995588183 1.4360560491347467 1.0 19.484724864755172 5.093097994577331 18.816532784185735 1.2903203155027898 12.506323698795844 0.011532066042585276 0.5653606870580503 1959.938181392608 395875.73302456853 0.13423595578962547 609.4302380954941 123907.61411870828 -5.093097994577331 11.216003383293055 S(ph)AGEEEDGPVLTDEQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SAGEEEDGPVLTDEQK 16 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F5H7X4;Q66PJ3-7;F5GYV5;F8WCT1;Q66PJ3-2;Q66PJ3 H7BZV4;F5GYV5;Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK 489.45 2.034999999999998e-231 3690540000.0 5069970.0 3640570.0 3137240.0 2902200.0 2904380.0 4851020.0 4471960.0 4250370.0 6401970.0 4280350.0 True False 5042673.844846616 3761744.1716789654 3578936.1226210874 3269618.2224307265 3274235.5773910354 4515680.405472779 4255634.210253818 4567554.192341536 4824290.275502945 4007174.398408 1.2584113750701758 0.938752297173155 0.8931321092595704 0.8159410840041563 0.8170933560295873 1.1268988959569122 1.062003743072557 1.139844124118024 1.2039132305845175 1.0 21.934153868771745 2.714970615268519 24.34604777539445 1.113366466167356 0.9343231170091909 0.289228597846486 0.1261267797054507 696.9882111721699 719325.15901317 0.041883302124139085 0.03951241930332633 518.7649376676162 -2.714970615268519 -0.179043349158165 S(ph)APASPT(ph)HPGLMSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 S(0.942)APAS(0.282)PT(0.776)HPGLMSPR;S(0.999)APAS(0.064)PT(0.83)HPGLMS(0.107)PR 134.83 5.8116e-05 2361800000.0 1004540.0 787480.0 716350.0 853130.0 737370.0 799660.0 762600.0 745440.0 954960.0 832940.0 True False 999131.6682548859 813690.7957582879 817205.8533741803 961136.1705266106 831269.6987655964 744381.3863971627 725710.124585096 801068.5180676222 719622.9038084056 779781.0560841892 1.28129769306298 1.0434862316922426 1.0479939811284034 1.232571839271306 1.0660296146971904 0.9546030652952864 0.9306588290684823 1.0272992807626435 0.9228525086543157 1.0 19.572709580922332 2.9401527107838787 4.385000950067284 0.9719293874250977 1.1379694238103362 0.5746261067215652 0.07426417382456874 0.17150485983954608 6.6617343731114635 0.02260363068909651 0.024714586266152753 871.2699003633637 -2.9401527107838787 0.16604003638523845 S(ph)APASPTHPGLMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 S(0.678)APAS(0.334)PT(0.034)HPGLMS(0.954)PR;S(0.615)APAS(0.318)PT(0.069)HPGLMS(0.997)PR 66.64399999999999 0.030615 152670000.0 185009.0 178439.0 173029.0 199023.0 207605.0 195422.0 189474.0 191732.0 226870.0 196776.0 True False 184012.93210043208 184378.2342463468 197389.97920497088 224219.29139371234 234042.2661787593 181912.93711390617 180308.4187590303 206040.01543536843 170960.92840225037 184217.58721159043 0.9988890576939145 1.000872050476765 1.0715045300113 1.217143785170611 1.2704664615433312 0.987489521860705 0.978779613218633 1.1184600697148042 0.9280380390927951 1.0 17.49105127621204 S(ph)APELPEGILK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAPELPEGILK 11 0 Q3KR16-2;Q3KR16;Q3KR16-3 Q3KR16-2 PLEKHG6 Pleckstrin homology domain-containing family G member 6 1 S(1)APELPEGILK 98.407 0.0058151 39527000.0 109340.0 117220.0 105300.0 114920.0 92991.0 125030.0 109670.0 99354.0 175920.0 146040.0 True False 108751.32558881596 121121.59683901379 120125.32471599246 129468.86021698694 104832.8526491608 116386.97038896197 104364.8431199154 106768.29998938953 132566.8732072282 136719.60216886544 0.7954333092228777 0.8859124435530011 0.878625470015799 0.9469663322826016 0.7667726572205747 0.851282248797139 0.7633495231430826 0.7809289838154855 0.9696259432022913 1.0 17.060860578568768 1.1444442363519334 6.058247811317135 0.9952410293246523 0.8331871596362219 0.5364070455965172 0.056384555116995125 0.17056306485637737 8.62650253227859 0.05729086860103328 0.014463782385721217 13.945825809803459 -1.1444442363519334 -0.16205386968843039 S(ph)APPNLWAAQR ddPTM_BT-474_Trastuzumab_2h_R1 9 SAPPNLWAAQR 11 0 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR 174.51 1.1459000000000003e-05 10431710000.0 871908.0 912373.0 873817.0 829654.0 701324.0 1040169.0 909653.0 832241.0 1285488.0 939848.0 True False 867213.7442060856 942740.7837638736 996842.8382464808 934688.1113336582 790633.4543269778 968264.5653244504 865649.6091780838 894347.049454168 968696.707056693 879866.0959956452 0.9856201394199167 1.0714593823473562 1.1329483460985803 1.0623072255966144 0.898583838978711 1.1004680936464255 0.9838424427509346 1.0164581332596254 1.1009592385310953 1.0 19.74692445575241 3.4452566797653588 24.9999651168223 1.0158001543382524 1.0697334632794995 0.11051223255742171 0.06364426035262695 375.1252086715063 294310.69222345337 0.017124622259996457 0.0231870405433476 2787.768328179507 -3.4452566797653588 0.05393330894124704 S(ph)AS(ph)PERMD ddPTM_BT-474_Trastuzumab_2h_R1 7 SASPERMD 8 1 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD 125.72 0.007481100000000002 6446211000.0 7952174.0 8737769.0 6042181.0 7037316.0 7663743.0 8348862.0 8399585.0 7800968.0 10257720.0 8155264.0 True False 7909360.378753589 9028600.359072095 6892867.565221277 7928239.484047727 8639675.244486423 7771724.821047192 7993264.98401928 8383115.844672859 7729842.352405917 7634788.069447218 1.0359633177514318 1.1825607046255302 0.9028236936667636 1.0384360917331599 1.1316195244581244 1.0179358942716388 1.0469530930408677 1.0980155268775944 1.012450153441598 1.0 22.86415667979737 1.066011104027103 8.590785129640038 1.0000452338937063 1.057882385441386 0.07789695959232812 0.0701504549512367 0.6131548977403739 69.0236230485834 0.06446018628228876 0.016135541110695237 11.641557941272305 -1.066011104027103 0.057837151547679655 S(ph)AS(ph)PPPATSSSSSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SASPPPATSSSSSSR 15 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 S(0.999)AS(0.841)PPPAT(0.033)S(0.019)S(0.022)S(0.026)S(0.022)S(0.019)S(0.017)R;S(1)AS(0.998)PPPAT(0.001)SSSSSSR;S(1)AS(1)PPPATSSSSSSR;S(1)AS(0.981)PPPAT(0.012)S(0.003)S(0.001)S(0.001)S(0.001)S(0.001)S(0.001)R;S(1)AS(0.999)PPPAT(0.001)SSSSSSR;S(1)AS(0.989)PPPAT(0.007)S(0.002)S(0.001)SSSSR 104.15 0.0037018 595996000.0 991033.0 1109023.0 866898.0 918256.0 1010225.0 1117330.0 1059892.0 960659.0 1262374.0 1076629.0 True False 985697.3884421169 1145936.1601364396 988949.7031875065 1034507.1154490912 1138871.1656773055 1040091.6070119084 1008620.9747793676 1032348.2527075585 951278.8426449609 1007917.6154715385 0.9779543221704423 1.1369343511278263 0.9811810886198689 1.0263806283067225 1.129924855162396 1.0319212513468354 1.00069783412556 1.0242387243371973 0.9438061484816097 1.0 19.94294629089216 1.858741780179852 1.4490790760497432 0.9811656829174251 1.0505414607793424 0.20837925893772402 0.053033786752868246 0.6217245703383222 2.4482311590092354 0.037900536837090215 0.016132657259143823 72.23401918437044 -1.858741780179852 0.06937577786191729 S(ph)AS(ph)PSTQQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SASPSTQQEK 10 0 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 2 S(1)AS(0.569)PS(0.373)T(0.058)QQEK;S(1)AS(0.568)PS(0.352)T(0.08)QQEK;S(0.987)AS(0.527)PS(0.408)T(0.077)QQEK;S(0.999)AS(0.536)PS(0.397)T(0.067)QQEK 143.94 4.8371e-05 512610000.0 1932960.0 1515270.0 1256887.0 1286427.0 1387040.0 1423107.0 1729630.0 1779900.0 2474080.0 1810300.0 True False 1922553.1581320437 1565704.8459499439 1433845.7645423498 1449288.5262996664 1563671.322369818 1324730.9627235408 1645961.189071754 1912725.1761490665 1864376.134973507 1694765.1041241963 1.1344068587756067 0.9238477014542101 0.8460439509009824 0.8551559875600667 0.922647816245825 0.7816605141915062 0.971203139046421 1.1286078356785056 1.1000793740894024 1.0 20.692653897789743 1.941174522481431 5.454260740422667 1.0836392208617274 0.9039467799485564 0.3923887917587121 0.09166080150491675 0.20213942968367363 12.449732325592088 0.04087100137368468 0.02493533917675241 87.3322244928456 -1.941174522481431 -0.17969244091317094 S(ph)AS(ph)PYPSHSLSS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASPYPSHSLSSPQR 15 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 S(0.999)AS(0.494)PY(0.009)PS(0.496)HS(0.001)LS(0.008)S(0.992)PQR 282.67 6.132999999999999e-28 0.0 299610.0 292920.0 180850.0 261310.0 259130.0 316010.0 289210.0 265250.0 360870.0 281900.0 True False 297996.9330498005 302669.6651261205 206312.1080236205 294391.8192072824 292128.6695161575 294164.97250752494 275219.80741051066 285044.30191220815 271938.42391025694 263908.9006532677 1.1291659065387825 1.146871759068778 0.7817550204366931 1.1155054584311432 1.1069299625478182 1.114645894016317 1.0428591333192798 1.0800859736318968 1.0304253598007242 1.0 18.00968048259167 S(ph)AS(ph)SILR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSILR 7 0 H0YMC3 H0YMC3 ACSBG1 2 S(0.998)AS(0.998)S(0.004)ILR 86.512 0.029271 555550000.0 102220.0 65866.0 76079.0 81468.0 90571.0 93367.0 98900.0 93546.0 119540.0 88414.0 True False 101669.65887770953 68058.30999316223 86790.26190947751 91781.84044689777 102104.67999362439 86912.75905227714 94115.82916531074 100526.87753696303 90080.96875393383 82771.3428249664 1.2283195536975486 0.8222448455026603 1.0485544748622695 1.1088601116570689 1.2335752509119189 1.0500344211651662 1.1370581405732916 1.2145130682432401 1.088311070951511 1.0 16.336843742437267 3.7672178092225397 3.8902464525331495 1.136372471309411 1.0080767318922448 0.09038430707108347 0.1131823697862417 0.3454503819830761 11.684087124952624 0.02813841772433136 0.05101941928654564 5850.834441213376 -3.7672178092225397 -0.1282957394171662 S(ph)ASASHQADIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 S(0.475)AS(0.475)AS(0.051)HQADIK 113.53 0.00088869 163240000.0 226400.0 294680.0 294020.0 208140.0 227730.0 286580.0 235020.0 235040.0 288260.0 326580.0 True False 225181.08755540478 304488.245662178 335415.4603323463 234490.5026589251 256730.06563853912 266769.3991367566 223651.18473641414 252579.87830893695 217222.1854861051 305737.38480079506 0.7365180012320797 0.9959143395583403 1.0970704827310804 0.7669670583847923 0.8397077963030692 0.872544256603005 0.7315140243059753 0.8261334428352843 0.710486176322982 1.0 18.221933446580135 3.7039150054568615 24.91122700352703 0.8121890305369367 0.9484424218603897 0.19333729258579035 0.11314604254545824 786.6654369664464 565635.8028311115 0.028832534551227244 0.04466937974634783 5057.256781772385 -3.7039150054568615 0.13625339132345304 S(ph)ASDNTLVAMDFSGHAGR ddPTM_BT-474_Trastuzumab_2h_R1 46 SASDNTLVAMDFSGHAGR 18 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 1 S(0.576)AS(0.42)DNT(0.003)LVAMDFSGHAGR;S(0.589)AS(0.411)DNTLVAMDFSGHAGR;S(0.556)AS(0.444)DNTLVAMDFSGHAGR;S(0.554)AS(0.43)DNT(0.017)LVAMDFSGHAGR;S(0.569)AS(0.427)DNT(0.004)LVAMDFSGHAGR;S(0.571)AS(0.429)DNTLVAMDFSGHAGR;S(0.582)AS(0.418)DNTLVAMDFSGHAGR;S(0.499)AS(0.499)DNT(0.002)LVAMDFSGHAGR;S(0.474)AS(0.474)DNT(0.053)LVAMDFSGHAGR;S(0.445)AS(0.445)DNT(0.109)LVAMDFSGHAGR;S(0.438)AS(0.438)DNT(0.123)LVAMDFSGHAGR;S(0.449)AS(0.449)DNT(0.102)LVAMDFSGHAGR;S(0.478)AS(0.478)DNT(0.044)LVAMDFSGHAGR;S(0.486)AS(0.486)DNT(0.028)LVAMDFSGHAGR;S(0.459)AS(0.459)DNT(0.082)LVAMDFSGHAGR;S(0.451)AS(0.451)DNT(0.097)LVAMDFSGHAGR;S(0.457)AS(0.457)DNT(0.085)LVAMDFSGHAGR;S(0.495)AS(0.495)DNT(0.01)LVAMDFSGHAGR;S(0.478)AS(0.478)DNT(0.044)LVAMDFSGHAGR;S(0.333)AS(0.333)DNT(0.333)LVAMDFSGHAGR;S(0.333)AS(0.333)DNT(0.333)LVAMDFSGHAGR;S(0.333)AS(0.333)DNT(0.333)LVAMDFSGHAGR;S(0.465)AS(0.465)DNT(0.069)LVAMDFSGHAGR;S(0.498)AS(0.498)DNT(0.003)LVAMDFSGHAGR;S(0.415)AS(0.415)DNT(0.171)LVAMDFSGHAGR;S(0.499)AS(0.499)DNT(0.001)LVAMDFSGHAGR;S(0.499)AS(0.499)DNT(0.002)LVAMDFSGHAGR;S(0.569)AS(0.431)DNTLVAMDFSGHAGR;S(0.491)AS(0.491)DNT(0.017)LVAMDFSGHAGR;S(0.574)AS(0.426)DNTLVAMDFSGHAGR;S(0.497)AS(0.497)DNT(0.006)LVAMDFSGHAGR;S(0.498)AS(0.498)DNT(0.004)LVAMDFSGHAGR;S(0.471)AS(0.471)DNT(0.057)LVAMDFSGHAGR;S(0.5)AS(0.5)DNTLVAMDFSGHAGR;S(0.578)AS(0.421)DNTLVAMDFSGHAGR;S(0.562)AS(0.433)DNT(0.005)LVAMDFSGHAGR;S(0.474)AS(0.474)DNT(0.052)LVAMDFSGHAGR;S(0.42)AS(0.42)DNT(0.16)LVAMDFSGHAGR;S(0.455)AS(0.455)DNT(0.089)LVAMDFSGHAGR;S(0.5)AS(0.5)DNTLVAMDFSGHAGR;S(0.594)AS(0.406)DNTLVAMDFSGHAGR;S(0.462)AS(0.462)DNT(0.077)LVAMDFSGHAGR;S(0.5)AS(0.5)DNTLVAMDFSGHAGR;S(0.49)AS(0.49)DNT(0.02)LVAMDFSGHAGR;S(0.333)AS(0.333)DNT(0.333)LVAMDFSGHAGR;S(0.577)AS(0.42)DNT(0.003)LVAMDFSGHAGR 292.44 2.114e-49 17305622100.0 2280806.0000000005 2524613.3000000003 2410651.8999999994 2505211.8000000003 2456554.5 2622848.6999999997 2681531.5999999996 2419080.0 2919586.1999999997 2738299.399999999 True False 2268526.3939173687 2608643.527529533 2750050.733758065 2822371.357014847 2769382.1544357273 2441537.3428907264 2551815.6720625116 2599604.033439343 2200093.30146074 2563538.7879159325 0.884919863358729 1.0175947170474722 1.0727556558618565 1.1009669018151804 1.0802965679669463 0.9524089724718428 0.9954269793347066 1.0140685390419741 0.858225087847935 1.0 21.289705296086343 2.7247699390979134 24.79819350028919 0.9715944736240302 1.0367176899354238 0.1875974315627379 0.0686539840804464 1321.187928869004 2375736.7912202138 0.022994420900585264 0.021777709885176723 530.6032907391456 -2.7247699390979134 0.06512321631139362 S(ph)ASDSGCDPASK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASDSGCDPASK 12 0 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 S(0.994)AS(0.006)DSGCDPASK;S(0.973)AS(0.027)DSGCDPASK 239.87 3.635e-16 744730000.0 2260500.0 1743710.0 1604970.0 1607600.0 1444340.0 1861950.0 1708800.0 1645460.0 2385900.0 1887310.0 True False 2248329.719165162 1801748.3332550463 1830935.825350679 1811121.9951690594 1628268.13772611 1733237.7790588464 1626138.8157500806 1768252.5806765782 1797926.914422041 1766860.259992616 1.2725000216907694 1.0197458022303225 1.0362652139554775 1.0250510672398214 0.9215602244248307 0.9809704922935387 0.9203550798957222 1.0007880196954388 1.0175829719717364 1.0 20.75275651176732 S(ph)ASDSGCDPASKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASDSGCDPASKK 13 1 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 S(0.998)AS(0.002)DSGCDPASKK;S(0.998)AS(0.001)DSGCDPASKK 115.5 0.00040376 1003260000.0 2008720.0 1532790.0 1339730.0 1445170.0 1257320.0 1722040.0 1723710.0 1543760.0 2585010.0 1700950.0 True False 1997905.2747097737 1583807.988558877 1528352.3388580864 1628128.3738233796 1417432.2492804967 1602999.4280461343 1640327.5620883508 1658963.2102544412 1947968.9228593498 1592393.91474344 1.254655180613189 0.9946081644089011 0.95978283055944 1.0224407156728534 0.890126642759036 1.0066601066510625 1.0301016268029595 1.0418045402551834 1.2232958847831308 1.0 20.602765832687076 -0.4352698845995109 7.6139094385703805 1.0000100472944686 1.0359363702326643 0.007743249854381684 0.10621538334293798 0.0 0.0 0.09993433964030017 0.02355474974435196 0.36705413033311424 0.4352698845995109 0.03592632293819564 S(ph)ASEPSLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASEPSLHR 9 0 Q96II5;P10398;P04049;P04049-2;H7C155 Q96II5;P04049 ARAF;RAF1 Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase 1 S(0.5)AS(0.5)EPSLHR 100.88 0.0028096 283350000.0 269800.0 359530.0 341050.0 351500.0 329360.0 353260.0 328700.0 299910.0 405930.0 332030.0 True False 268347.4267775982 371496.7387095259 389066.875540258 395999.8639598933 371302.0437303351 328839.96768459294 312799.525244061 322290.8071121217 305893.99068332236 310839.5611348151 0.8632988214174337 1.1951398250379173 1.251664601892533 1.2739686753969617 1.1945134730430809 1.0579089948655886 1.0063053882269377 1.0368397315177655 0.9840896363595502 1.0 18.245810604375666 2.589329169398209 3.8795775396451777 1.0141263432070735 1.1693548622269292 0.29861497860935693 0.1070533133679389 0.30045706337717837 7.978487248044662 0.03717666353076298 0.034463773691436564 388.4446724115875 -2.589329169398209 0.15522851901985568 S(ph)ASPHDVDLCLVSPCEFEHR ddPTM_BT-474_Trastuzumab_2h_R1 5 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.571)AS(0.429)PHDVDLCLVSPCEFEHR;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;S(0.569)AS(0.431)PHDVDLCLVSPCEFEHR;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;S(0.559)AS(0.441)PHDVDLCLVSPCEFEHR 204.65 1.5749000000000002e-21 5526170000.0 601404.0 693278.0 609107.0 651730.0 631161.0 704908.0 623889.0 653373.0 718791.0 648404.0 True False 598166.1076862665 716353.3391345985 694863.9711470456 734238.9511766182 711535.6121656606 656179.3691349464 593709.1055825737 702131.0110208674 541654.5893559392 607022.3015934062 0.9854104307471199 1.1801104131663749 1.1447091306580648 1.2095749188279805 1.1721737575339681 1.0809806615218338 0.9780680281830074 1.1566807499128204 0.8923141504589209 1.0 19.211389995542433 2.509861308497411 5.209263025975517 1.0322584575380322 1.1440499646646967 0.3355968344117931 0.08405481139971041 0.25227705242748766 18.242946493521252 0.02784728784823648 0.025245357131820106 323.4903341221818 -2.509861308497411 0.11179150712666441 S(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_BT-474_Trastuzumab_2h_R1 5 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;S(0.5)AS(0.5)PHDVDLCLVS(0.001)PCEFEHRK;S(0.539)AS(0.461)PHDVDLCLVSPCEFEHRK;S(0.542)AS(0.458)PHDVDLCLVSPCEFEHRK 121.35 1.4044e-05 1377961000.0 473012.0 562194.0 484153.0 530979.0 505030.0 590984.0 570248.0 536272.0 821060.0 608746.0 True False 470465.3559485736 580906.2874365498 552317.5340666838 598200.8869574973 569342.5769526694 550130.6671066969 542662.9256810937 576291.3397740383 618720.7646403292 569895.3091063283 0.8255294409886018 1.019321054506464 0.9691561331374903 1.0496680309503792 0.9990301163304439 0.9653188196431639 0.952215112161673 1.0112231677739896 1.0856744295905254 1.0 19.12033739212616 4.741832574172291 24.852754038675997 1.0027757160245634 0.8255293692606616 0.6673717001220714 0.03811508801382318 174.49822815020056 1325366.3198521212 0.00913789535630653 0.06514223013393107 55186.46477037639 -4.741832574172291 -0.17724634676390183 S(ph)ASPS(ph)TQQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASPSTQQEK 10 0 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 2 S(0.998)AS(0.044)PS(0.816)T(0.142)QQEK;S(0.998)AS(0.012)PS(0.844)T(0.146)QQEK 164.92 8.7875e-06 370190000.0 1499980.0 1132450.0 877010.0 939470.0 1021750.0 1062350.0 1317060.0 1295950.0 1780740.0 1342360.0 True False 1491904.2743434466 1170142.91366952 1000485.3848924268 1058406.80567397 1151863.8061132808 988912.2450029085 1253348.7761422077 1392660.3697007603 1341900.487693494 1256689.4355477835 1.187170220535143 0.9311313364860601 0.7961277914748452 0.8422182726574896 0.9165858910966258 0.7869185631944519 0.9973416985047545 1.1081977219723407 1.0678059747582485 1.0 20.261196731291356 2.005741414646513 24.506732623530855 1.066209844308148 0.902115803598018 0.27822876376665817 0.10795747093904459 137.89631225347756 588594.6370356295 0.04140015620142237 0.030480797267492397 101.3307867601432 -2.005741414646513 -0.16409404071013 S(ph)ASPTVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASPTVPR 8 0 Q92817;K7EKI0;K7EQ87 Q92817 EVPL Envoplakin 1 S(0.715)AS(0.252)PT(0.034)VPR;S(0.745)AS(0.247)PT(0.008)VPR 79.906 0.024682 476790000.0 1533670.0 1527050.0 1465880.0 1514560.0 1390980.0 1667930.0 1520040.0 1452830.0 1978710.0 1597010.0 True False 1525412.8911267538 1577876.936128781 1672263.1623426294 1706303.1407086658 1568113.0580156096 1552629.924984894 1446509.8580833077 1561247.551921258 1491083.4338555837 1495087.4545309518 1.0202833864359566 1.0553743403751605 1.1185052468166568 1.141273131238987 1.0488437002553592 1.0384876953381934 0.9675085251364883 1.0442516571119662 0.9973218819653434 1.0 20.511798446073907 2.768601370792074 2.673929387030232 1.0093124802476776 1.084239656312831 0.4754185277102615 0.03673035518169889 0.26337593439207185 3.7418245014018097 0.013094312748212386 0.013311732690502707 586.9503565746859 -2.768601370792074 0.07492717606515331 S(ph)ASPYPS(ph)HSLSS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASPYPSHSLSSPQR 15 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 S(0.995)AS(0.007)PY(0.024)PS(0.968)HS(0.009)LS(0.096)S(0.902)PQR;S(0.998)AS(0.028)PY(0.064)PS(0.909)HS(0.002)LS(0.129)S(0.87)PQR 202.26 4.0128e-09 853700000.0 667820.0 689810.0 486360.0 682380.0 668020.0 842060.0 709140.0 671340.0 868190.0 756130.0 True False 664224.5313217767 712769.9088510495 554835.2604830966 768769.2380340027 753088.3873352516 783850.3741960264 674836.1890221285 721438.7997954458 654236.2076499742 707873.1360445375 0.9383383794352459 1.006917585308964 0.7838060695217396 1.0860268583290802 1.063874794773776 1.1073317156461615 0.9533292826917923 1.01916397594449 0.9242280492599614 1.0 19.43313130028286 3.7082874916358346 24.999604455565464 1.023499011307989 0.919410258029517 0.3252703131936141 0.07370325215399529 821.4536752791045 678358.026852015 0.01954799566396177 0.03028771468408128 5108.430528680646 -3.7082874916358346 -0.10408875327847189 S(ph)ASQLSQTEAGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASQLSQTEAGGK 13 0 A0A590UJL1;F8W6W8;D6RA03 A0A590UJL1;D6RA03 RIMS2 1 S(0.998)AS(0.002)QLSQTEAGGK 145.46 2.635e-06 0.0 119390.0 119370.0 111780.0 127990.0 113400.0 129170.0 123910.0 119250.0 130470.0 128890.0 True False 118747.21750547587 123343.15828931131 127517.65239082271 144193.52087688982 127840.81782554038 120240.78193347364 117915.9999178327 128149.04053923026 98317.41670843019 120664.12985171919 0.9841136520969491 1.0222023598967174 1.0567983422043123 1.1949990527763739 1.0594765650955293 0.9964915180777768 0.9772249637297878 1.062030950678624 0.8148023511979057 1.0 16.880637340453838 2.7020274685834886 4.066081115669274 0.9803608128738183 1.0685948756813717 0.2632764724107388 0.0774319416048538 0.35423081470858375 13.108427011487368 0.026212978828794465 0.02541930536620042 503.5324555795955 -2.7020274685834886 0.08823406280755342 S(ph)ASQLSQTEAGGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASQLSQTEAGGKK 14 1 A0A590UJL1;F8W6W8;D6RA03 A0A590UJL1;D6RA03 RIMS2 1 S(0.998)AS(0.002)QLSQTEAGGKK;S(0.994)AS(0.006)QLSQTEAGGKK 165.3 2.441e-06 623280000.0 572030.0 332250.0 327050.0 350770.0 309350.0 428510.0 406450.0 426810.0 681000.0 498880.0 True False 568950.2540385076 343308.7404006336 373095.7972304401 395177.4460347416 348743.88883889717 398888.1123040394 386788.4607102179 458660.7294972656 513176.6749324825 467041.0512873442 1.218201810034177 0.7350718731347985 0.7988501143572819 0.8461300028027109 0.746709283643537 0.8540750565813238 0.8281680157324085 0.9820565627647094 1.0987828018928332 1.0 18.83318983783167 1.5912852379912976 3.6878010065164384 1.0481048006780667 0.8486907311228286 0.2603887197075331 0.12969698182619643 0.22451101186039193 7.063332760281123 0.07643134633620718 0.032552741193416786 39.01981787478102 -1.5912852379912976 -0.1994140695552381 S(ph)ATREPPYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SATREPPYR 9 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 S(0.98)AT(0.02)REPPYR 106.67 0.0017554000000000005 238800000.0 80023.0 76974.0 53244.0 64422.0 48154.0 68492.0 64595.0 51995.0 100300.0 81133.0 True False 79592.16505939119 79536.03305823448 60740.29239485565 72577.81859466349 54286.1264688807 63757.30925282558 61470.293073136985 55875.13092526021 75582.40895114247 75955.0224785441 1.0478854783023008 1.0471464619828392 0.7996876363510217 0.9555367930430855 0.7147141123447832 0.8394087339100696 0.8092985962909987 0.7356344465705861 0.9950942871815108 1.0 16.21285774474182 4.244857694022553 24.980982784678176 0.8370272448506018 1.0475160880459624 0.3743611426433918 0.09643645803093905 125.7209043918899 498730.51873951335 0.022332583801518847 0.058064530791188514 17573.47686638876 -4.244857694022553 0.21048884319536065 S(ph)AVLLVDETATTPIFANR ddPTM_BT-474_Trastuzumab_2h_R1 4 SAVLLVDETATTPIFANR 18 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR 223.76 5.2151e-19 288217000.0 84382.0 52281.0 61348.2 61484.8 56632.4 72337.0 62858.6 66887.0 87717.0 75551.0 True False 83927.69668772159 54021.14148046812 69985.4933118865 69268.76937582147 63844.200453466816 67336.513452982 59817.889374829145 71878.447585304 66100.32069758092 70729.27049753474 1.1866048680743408 0.7637734858632681 0.9894841671571578 0.9793508244685745 0.9026560008941714 0.9520317823061529 0.8457303313613858 1.016247546167033 0.9345539722466787 1.0 16.110019760956998 0.8998443983526208 1.2436920554830564 0.9969814477665395 0.9442479431845053 0.010896791463571587 0.10564190865687076 2.8585007879261366 8.780089483385217 0.09040422881077953 0.02775686399026586 7.94043688989031 -0.8998443983526208 -0.052733504582034185 S(ph)AVS(ph)SAQAST(ph)NRK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAVSSAQASTNRK 13 1 F6VGH2 F6VGH2 KIF6 3 S(0.666)AVS(0.666)S(0.666)AQAS(0.025)T(0.977)NRK;S(0.666)AVS(0.666)S(0.666)AQAS(0.107)T(0.894)NRK 52.79 0.08161900000000001 3362000000.0 1050720.0 8520100.0 832410.0 506120.0 894600.0 1171260.0 1374840.0 859920.0 14163500.0 1141000.0 True False 1045063.0402659673 8803686.377990786 949606.0925625749 570194.740106347 1008522.0072903737 1090293.553049471 1308333.7368011698 924091.5969852818 10673095.206176542 1068180.4031407542 0.9783581848095927 8.241759867626708 0.8889941153858121 0.5338000382985986 0.9441495128772557 1.02070169967891 1.2248246952989368 0.8651081729904327 9.991847046430179 1.0 20.026723891197292 -0.13715995114842183 10.73048319754973 1.0000000043648332 2.4916123052055683 0.019866368382564725 3.2682955156259905 0.0 0.0 3.044965178002137 0.7177051752807381 0.7291888996971039 0.13715995114842183 1.4916123008407352 S(ph)AVSPDLHITPIYEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAVSPDLHITPIYEGR 16 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 S(0.5)AVS(0.5)PDLHITPIYEGR 80.975 0.0090624 71489000.0 21220.0 27866.0 28827.0 27080.0 28659.0 29536.0 29282.0 28819.0 34249.0 29828.0 True False 21105.75387776364 28793.502964647272 32885.59103122424 30508.32522342503 32308.553774798598 27494.24584026536 27865.51779189717 30969.620119916817 25808.792863087532 27924.3515029644 0.7558189444622587 1.0311252156237398 1.1776671349998284 1.0925347799101555 1.157002832147016 0.9845974699661914 0.9978931037642546 1.1090542287662128 0.9242396501257233 1.0 14.769236156432761 4.727983641993304 4.566470943044493 1.0633299689494125 0.7386508564518335 0.573965103648481 0.07666495710276361 0.1219215314577746 6.623874531271283 0.018172664684558405 0.12490561634484441 53454.42250341031 -4.727983641993304 -0.32467911249757897 S(ph)CETLEGPQTVDTWPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCETLEGPQTVDTWPR 16 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 S(0.866)CET(0.134)LEGPQTVDTWPR;S(0.993)CET(0.007)LEGPQTVDTWPR 321.25 4.1224999999999996e-58 166188000.0 206701.0 191329.0 177684.0 164204.0 148523.0 191408.0 182239.0 160283.0 235060.0 183803.0 True False 205588.14478264 197697.27010417706 202700.36274298592 184992.2095637847 167436.5236852092 178176.41548596657 173423.40334941406 172244.1313605823 177132.61264262747 172072.53517833463 1.1947760551651667 1.1489182157936195 1.1779937020914397 1.0750827223650783 0.9730578067654974 1.0354727167894977 1.0078505740017103 1.000997231673665 1.0294066537640572 1.0 17.392657318915294 3.5589089530482507 3.1683472160698334 1.0088122786277482 1.1716704287291004 0.931720301721984 0.020058997628340614 0.05508161925439318 1.065482907238675 0.0052672771093263465 0.008424772241376315 3621.6706453939255 -3.5589089530482507 0.16285815010135218 S(ph)CETSSQDLGFSYYPAENLIEYK ddPTM_BT-474_Trastuzumab_2h_R1 5 SCETSSQDLGFSYYPAENLIEYK 23 0 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 S(0.25)CET(0.25)S(0.25)S(0.25)QDLGFSYYPAENLIEYK;S(0.925)CET(0.075)SSQDLGFSYYPAENLIEYK;S(0.862)CET(0.134)S(0.003)SQDLGFSYYPAENLIEYK;S(0.897)CET(0.101)S(0.001)SQDLGFSYYPAENLIEYK;S(0.965)CET(0.033)S(0.001)SQDLGFSYYPAENLIEYK 267.39 1.9054e-44 921146000.0 705998.0 558464.0 508597.0 510156.0 458129.0 686695.0 646426.0 653456.0 932768.0 675422.0 True False 702196.9852117524 577052.1366413827 580203.0367956283 574741.6972925266 516469.0126066755 639225.3909561555 615155.9047928738 702220.2049023345 702899.8248508403 632315.9897021332 1.1105159392577406 0.9126008926537129 0.9175840026897724 0.908946961096574 0.8167894233545635 1.010927133532203 0.9728615357056792 1.1105526609142546 1.1116274715462393 1.0 19.270286176587184 2.022091017846835 2.123765189909775 1.0831377165436886 0.933392187825745 0.33747090261186785 0.0782468156618063 0.32018805954087004 2.7150343626001128 0.04296257488874593 0.02318751857349919 105.21823632436137 -2.022091017846835 -0.14974552871794367 S(ph)CHDLDLLGQSPGWGQTQAVETNIVCK ddPTM_BT-474_Trastuzumab_2h_R1 4 SCHDLDLLGQSPGWGQTQAVETNIVCK 27 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK 342.28 4.132599999999998e-96 1438010000.0 841990.0 598252.0 590302.0 692719.0 513089.0 693690.0 613916.0 551478.0 963800.0 758520.0 True False 837456.8193938824 618164.4561690287 673411.3906030364 780417.1543739206 578427.8428332338 645736.8430706155 584218.537693134 592632.0887085424 726284.4042583355 710110.6041983563 1.1793329298881365 0.8705185537496295 0.9483190176595805 1.0990078866023039 0.8145602099354943 0.9093468528041315 0.8227148478548046 0.8345630739841784 1.022776451956013 1.0 19.437684225393504 3.2323479168082425 24.99999260277496 0.8837141462443543 1.0078837684106017 0.24476639773968267 0.10225086552420985 201.2433587345691 809805.3511225582 0.02843645725304783 0.034791823329211984 1707.4496929555803 -3.2323479168082425 0.12416962216624738 S(ph)CPELTSGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCPELTSGPR 10 0 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(1)CPELTSGPR 116.75 0.0025392 0.0 96586.0 92294.0 89032.0 80413.0 81643.0 100700.0 82690.0 98080.0 103820.0 107670.0 True False 96065.99170771331 95365.94999709885 101566.93171998336 90593.27755506942 92039.75211402634 93738.84602230234 78689.96879352425 105399.2276401486 78234.95211672604 100798.40841907529 0.9530506802082958 0.9461057123105489 1.0076243594810832 0.8987570238055997 0.913107196408952 0.9299635529221612 0.7806667786495805 1.0456437685200854 0.7761526530405087 1.0 16.62111333367112 3.7176769932972644 24.231789895303578 0.9100405069899509 0.9666448038992153 0.11261119740078296 0.0799775620384002 1228.8019938749856 1425809.2884777645 0.020038183936855202 0.031088288282390297 5220.078010645953 -3.7176769932972644 0.056604296909264384 S(ph)CSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 35 0 Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 S(0.521)CS(0.459)VT(0.02)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER 125.73 7.5191e-08 151470000.0 44971.0 63251.0 66772.0 66436.0 66063.0 78111.0 68786.0 69830.0 89392.0 86164.0 True False 44728.881132747825 65356.27129896306 76172.91720737172 74846.7907881634 74475.73146392129 72711.370423516 65458.558391962164 75041.06918955516 67362.53939143104 80664.93975128829 0.5545021327810943 0.8102190555211971 0.9443125779580734 0.9278726423020485 0.9232726348466881 0.9013999222921968 0.8114871044816808 0.9302811037971015 0.8350906800293644 1.0 16.299654135609067 4.690432638623466 2.730985242426426 0.9035629903560309 0.507258415882858 0.812196912902459 0.051386900223843957 0.1486209548764255 1.6023697938048318 0.012085509935774492 0.1257481031209685 49026.69738874772 -4.690432638623466 -0.3963045744731729 S(ph)CTPSPDQISHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.5)CT(0.5)PSPDQISHR 139.21 3.9118e-05 670770000.0 172760.0 200230.0 161990.0 159200.0 163330.0 180010.0 176920.0 160280.0 225500.0 188210.0 True False 171829.87935544027 206894.5345084089 184796.78395767914 179354.7036768562 184129.1073672442 167566.3323979609 168361.70369996724 172240.90748534873 169928.54654519062 176198.27666531224 0.9752074912845503 1.174214290991075 1.0488001781578133 1.0179140629027807 1.0450108301399368 0.9510100528182369 0.9555241225189136 0.9775402503653284 0.9644166206458935 1.0 17.426840288260596 3.1627844446497146 1.3506614657964502 0.9682975359640141 1.073737801601816 0.39343502319491375 0.04964976960764961 0.37328307797964816 1.429763871211687 0.017408368927645284 0.02431833964590753 1454.7368652191676 -3.1627844446497146 0.10544026563780184 S(ph)DDELLDDFFHDQSTATSQAGTLSSIPTALTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SDDELLDDFFHDQSTATSQAGTLSSIPTALTR 32 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 S(1)DDELLDDFFHDQSTATSQAGTLSSIPTALTR;S(1)DDELLDDFFHDQSTATSQAGTLSSIPTALTR;S(1)DDELLDDFFHDQSTATSQAGTLSSIPTALTR 224.75 2.7603000000000003e-36 359690000.0 45348.0 36410.0 31748.9 37660.3 37125.8 41233.3 36960.0 41912.0 55921.0 41215.1 True False 45103.85140663647 37621.88483969022 36218.869153614156 42428.09011860244 41853.55056814327 38382.93902374777 35172.103599088834 45039.68626482368 42140.018853009344 38584.71703197761 1.1689563867801867 0.9750462808502798 0.9386843273619778 1.0996086891978392 1.084718349326148 0.9947705199428413 0.9115553075052869 1.1672934189849422 1.0921427470385547 1.0 15.235741905068405 1.7157868698648484 24.999999984494213 1.0985280463186586 1.0235682178388696 0.09987427977652064 0.08250593986911642 1.7188499443900063 1878.9885917204006 0.03782746462844725 0.020977207737716816 51.97408709633348 -1.7157868698648484 -0.07495982847978899 S(ph)DEDRYQNGAER ddPTM_BT-474_Trastuzumab_2h_R1 2 SDEDRYQNGAER 12 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 S(1)DEDRYQNGAER;S(1)DEDRYQNGAER 174.87 1.7688e-05 624730000.0 195156.0 212570.0 180507.0 170757.0 174499.0 208644.0 206258.0 183486.0 229890.0 181260.0 True False 194105.30177987012 219645.26394872135 205920.81660502977 192374.8186918905 196720.41331339502 194220.93137514635 196280.51255792382 197178.65704302918 173236.68986817708 169691.83161550658 1.1438694481162794 1.2943773536866578 1.213498697283273 1.1336716497219488 1.1592803934082738 1.1445508574344263 1.1566880426081012 1.161980840007686 1.0208899757809353 1.0 17.372557594582982 1.143832080473777 0.30281111374012437 0.9695518689208241 1.2304920950455183 0.6285603102453815 0.04881292910995412 1.160498761720061 0.35850584577969696 0.11509478452339245 0.07641034599893536 13.926182443867942 -1.143832080473777 0.26094022612469414 S(ph)DEEDFVKVEDLPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDEEDFVKVEDLPLK 15 1 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;H0YBA1 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 S(1)DEEDFVKVEDLPLK;S(1)DEEDFVKVEDLPLK 191.95 9.3314e-08 143192000.0 477440.0 257040.0 205920.0 172276.0 196108.0 343290.0 313860.0 325810.0 494230.0 308630.0 True False 474869.5160885703 265595.4210160385 234911.74611127414 194086.1239361436 221081.19137681735 319559.1703177372 298677.39273836615 350123.59662965726 372433.638842703 288932.96916856326 1.6435283154257547 0.9192285040378704 0.8130319872711612 0.6717340859184329 0.7651642940333291 1.1059975995031106 1.033725550939526 1.2117813956544206 1.2889966829137645 1.0 18.140375308807236 2.20675717671365 2.020950893042864 1.176414639424193 0.9415373208609057 0.07861779056076679 0.26089170313528004 0.7145626604319408 5.850701425157524 0.1325069356446567 0.0843631568522207 160.97453406404705 -2.20675717671365 -0.2348773185632873 S(ph)DERPVHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDERPVHIK 9 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 S(1)DERPVHIK;S(1)DERPVHIK 92.856 0.0059305 954840000.0 1659670.0 1501880.0 1415880.0 1357530.0 1386610.0 1740890.0 1614700.0 1524080.0 2155100.0 1689510.0 True False 1650734.5211266724 1551869.1678943678 1615223.5969504227 1529393.1588093142 1563186.5644186288 1620546.3719142582 1536590.7922469913 1637814.5887214257 1624004.4818604896 1581684.0253377166 1.043656314840894 0.9811499281994818 1.0212049758835648 0.966939751751468 0.9883052110138507 1.0245702339746676 0.9714903657314886 1.0354878487008328 1.0267565808624368 1.0 20.593029989230573 1.6813222095310374 12.088897228243244 1.0231650669091525 0.9990245863816112 0.1312109822529628 0.02462132966584941 0.20459284604005262 37.99089258714959 0.010844808861735169 0.0059272920779860115 48.00895020768424 -1.6813222095310374 -0.024140480527541364 S(ph)DSASSEPVGIYQGFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDSASSEPVGIYQGFEK 17 0 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 S(0.951)DS(0.048)ASSEPVGIYQGFEK;S(0.864)DS(0.119)AS(0.017)SEPVGIYQGFEK 278.24 8.4358e-36 337706000.0 338720.0 279120.0 261550.0 240713.0 263480.0 320980.0 281240.0 291120.0 389580.0 323210.0 True False 336896.36915532954 288410.3404683967 298373.96656664595 271187.24111914024 297032.6162316878 298791.4081056463 267635.34675886744 312844.8526774066 293573.22910454735 302582.4610859976 1.1134034932037238 0.9531627822487273 0.9860914128854431 0.8962424330406433 0.9816584053339018 0.9874710088392274 0.8845038334287401 1.0339160159996594 0.970225531416741 1.0 18.20696883992411 4.741616225741984 24.744032933535742 0.9659653900869359 1.1134035557889295 0.5132084685125449 0.043091523521688914 198.98497224694165 1611266.5584374885 0.009886235124292106 0.07013600334917637 55158.979890594375 -4.741616225741984 0.14743816570199353 S(ph)DSDLLTCSPTEDATMGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSDLLTCSPTEDATMGSR 19 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.986)DS(0.014)DLLTCSPTEDATMGSR;S(1)DSDLLTCSPTEDATMGSR;S(0.894)DS(0.106)DLLTCSPTEDATMGSR;S(0.996)DS(0.004)DLLTCSPTEDATMGSR 517.96 1.2075999999999985e-295 1164611000.0 279197.0 266677.0 215930.0 208914.0 186311.0 242457.0 250119.0 227589.0 298332.0 258431.0 True False 277693.8343737026 275553.18273534917 246331.0671027941 235362.49097956505 210036.60149818566 225696.51827238695 238019.7884226327 244572.84685352552 224812.07604399027 241937.71232608933 1.1477906098385369 1.1389426645646386 1.0181590324818122 0.9728226687633467 0.8681432897699446 0.9328703495724052 0.9838060636938818 1.0108917890563687 0.9292146887004671 1.0 17.884276143073382 4.124387594817947 2.4145145938356696 0.9579343200330949 1.1521419196688603 0.7832146207808912 0.038815364018278196 0.14093646578846658 1.626278810973569 0.011421644818391143 0.0337098334548967 13316.4233871192 -4.124387594817947 0.1942075996357654 S(ph)DSEATISR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDSEATISR 9 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;H0Y4T4 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 S(0.998)DS(0.002)EATISR;S(0.999)DS(0.001)EATISR 147.3 9.7259e-05 626580000.0 552930.0 442340.0 382560.0 452540.0 339440.0 445800.0 433220.0 430210.0 591170.0 471400.0 True False 549953.0863162975 457063.0194998233 436421.1227288703 509831.5176000285 382665.67198149377 414982.8953003215 412263.4935388866 462314.45476211526 445484.0747721531 441314.84841415554 1.2461694599502566 1.0356846617381175 0.9889110332388076 1.1552557531931782 0.8671035505752529 0.9403329545596377 0.9341709099984656 1.047584182638361 1.0094472832105683 1.0 18.751448763271416 7.988691369675785 0.9667139018882431 0.9868184357598087 199.99118837858842 0.5259729729477569 0.07186842098332345 1042.1773635990285 1.6934225325503867 0.022241277252148695 458871.14677058364 97429700.98234488 -7.988691369675785 199.00436994282862 S(ph)DSELEVKPAESLLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SDSELEVKPAESLLR 15 1 Q92539 Q92539 LPIN2 Phosphatidate phosphatase LPIN2 1 S(0.995)DS(0.005)ELEVKPAESLLR;S(0.995)DS(0.005)ELEVKPAESLLR;S(0.982)DS(0.018)ELEVKPAESLLR;S(0.985)DS(0.015)ELEVKPAESLLR;S(0.963)DS(0.037)ELEVKPAESLLR 289.61 4.2897999999999997e-44 1893300000.0 1831430.0 1457410.0 1309030.0 1093980.0 1127660.0 1949270.0 1767800.0 1493060.0 2368720.0 1681860.0 True False 1821569.7843710014 1505919.0108270494 1493330.0457072689 1232477.7558317024 1271260.8168355294 1814521.552988017 1682284.7603481929 1604479.7188050572 1784980.6952218348 1574522.2548872125 1.1569031677494361 0.9564291683733125 0.9484337493941871 0.7827629949377808 0.8073946321746931 1.1524267423695427 1.0684413987331667 1.0190263832885555 1.1336649511820955 1.0 20.58648271853361 2.729949317472181 24.97111314176253 1.0706059132563555 0.9246331679493814 0.32483411046518584 0.10378837244011972 805.0041516537208 2334352.346796396 0.03512327799885865 0.03359538175752285 536.9691279690504 -2.729949317472181 -0.14597274530697402 S(ph)DSELEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDSELEVR 8 0 Q9BQK8-2;Q9BQK8 Q9BQK8-2 LPIN3 Phosphatidate phosphatase LPIN3 1 S(0.984)DS(0.016)ELEVR;S(0.986)DS(0.014)ELEVR 101.82 0.0077403 0.0 226602.0 217913.0 197648.0 199667.0 198585.0 222353.0 217313.0 206971.0 226344.0 221978.0 True False 225382.00000984903 225166.10247380994 225475.12041278716 224944.82172768103 223873.622644488 206982.26047266112 206800.73997372287 222416.22699744292 170564.55405421145 207811.17399507275 1.084551882735588 1.0835129706699442 1.0849999837743722 1.0824481542701574 1.0772934791744937 0.9960112177489008 0.995137730075218 1.0702804027405979 0.8207670009999345 1.0 17.66491370439533 2.2065014126959617 0.747085414587797 0.9523813791774985 1.088706389786201 0.46212335662151827 0.05799020688033935 0.6586125318850334 0.7037518501586191 0.04759045789257457 0.029044976368512315 160.87976110618783 -2.2065014126959617 0.1363250106087025 S(ph)DSELVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSELVSK 8 0 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 S(0.999)DS(0.001)ELVSK 136.96 0.0008062999999999999 375290000.0 249430.0 251310.0 181260.0 167510.0 184950.0 254620.0 225880.0 219690.0 314080.0 294880.0 True False 248087.09659427826 259674.70142989693 206779.83245983656 188716.74882481273 208502.28621546453 237018.7187110092 214953.32145460433 236084.38336321607 236679.1924563791 276060.5059405303 0.8986692817542031 0.9406441553281685 0.7490380840799504 0.6836064730877028 0.7552774907265463 0.8585752529268653 0.7786456839317326 0.8551907218994739 0.8573453549612967 1.0 18.074624980764597 0.7040597884720355 1.0359572969584194 0.999605138268224 0.8070229589190241 0.37779076023409697 0.0721529237371356 1.1382957959024895 2.123912741596716 0.0747479431957874 0.023884904833080905 5.05894302688701 -0.7040597884720355 -0.19258217934919986 S(ph)DSLILDHQWELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSLILDHQWELEK 14 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 S(0.5)DS(0.5)LILDHQWELEK 69.602 0.02998 9499000.0 12843.0 12675.0 12203.0 13475.0 12098.0 11777.0 14157.0 13123.0 20619.0 16404.0 True False 12773.854714991434 13096.879712800695 13921.076329622561 15180.93361837713 13638.608589536054 10962.88371007602 13472.171825008138 14102.304897243774 15537.723730444732 15357.082675829037 0.8317891480194073 0.8528234163520041 0.9064922435778348 0.9885297838677946 0.8880989233067202 0.7138649925568756 0.8772611380293202 0.9182932198079395 1.0117627194193601 1.0 13.90661655857374 1.4224569320496794 2.6986008984651346 1.0070544513119404 0.8670167562304959 0.4227515631202883 0.06485960338048977 0.2845759674537949 3.7124405208035833 0.057416208509128305 0.018584794342303906 26.451903644829965 -1.4224569320496794 -0.14003769508144448 S(ph)DSLLSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 S(0.999)DS(0.001)LLSFR;S(0.999)DS(0.001)LLSFR;S(0.999)DS(0.001)LLSFR;S(0.995)DS(0.005)LLSFR 157.66 0.00039157 164548000.0 150005.0 161952.0 147432.0 144333.0 144704.0 173266.0 169572.0 145503.0 215872.0 157767.0 True False 149197.38974712222 167342.47441794872 168189.14409808334 162605.54300120403 163131.19667219583 161288.52924429238 161369.1545320535 156361.1727092633 162673.23813660062 147698.1749888758 1.0101505300140596 1.133002993642626 1.1387354252058353 1.100931294604358 1.1044902666162422 1.0920143681967645 1.0925602468968039 1.0586533836388972 1.101389628875595 1.0 17.172292474197164 -0.1334016004839159 0.44770652233078523 0.9859140493924713 1.1014314632741782 0.37969518650721257 0.034947687925405445 5.095130127084413 1.1946802614628573 0.16062495123294016 0.01956933458802656 0.7355266272624755 0.1334016004839159 0.11551741388170689 S(ph)DSPEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.535)DS(0.465)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.5)DS(0.5)PEIPFQAAAGPSDGLDASSPGNSFVGLR 141.13 1.5738000000000002e-08 297016000.0 268900.0 282660.0 254070.0 245499.0 243500.0 289150.0 278500.0 265380.0 323950.0 297080.0 True False 267452.2722775983 292068.1672284218 289840.8475839715 276579.14822842064 274508.281662426 269161.7410858863 265027.89102668397 285184.003172335 244116.8632076031 278120.1000570161 0.961643089524163 1.05015123742781 1.042142756041554 0.9944594014302469 0.9870134578771916 0.9677896025159876 0.9529260595417297 1.0253987508053921 0.8777390169123261 1.0 18.085348488106256 3.324810702449241 2.3068210158878473 0.9711754932582459 1.020649382463578 0.21499274968268933 0.04233162708756045 0.4613202093037837 5.009921278501186 0.0124362918942072 0.01783952255939823 2112.568026247196 -3.324810702449241 0.04947388920533213 S(ph)DVRTEEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDVRTEEQK 9 1 Q16656-2;Q16656;Q16656-4;Q16656-3 Q16656-2 NRF1 Nuclear respiratory factor 1 1 S(0.5)DVRT(0.5)EEQK 103.22 0.002094 607950000.0 139820.0 362980.0 369740.0 474050.0 414510.0 287800.0 293390.0 268780.0 154490.0 385350.0 True False 139067.22465546234 375061.56987395685 421796.17816230847 534064.6813945591 467295.39150674426 267905.06340832805 279197.60484136 288837.72843718505 116418.00955994011 360756.63308526645 0.3854876443050548 1.0396525953420497 1.1691986771109903 1.480401557213587 1.2953203036360994 0.7426199239003527 0.7739223045009692 0.8006442624962545 0.32270511165466 1.0 18.46066639564322 2.690155789779003 11.607088387522381 0.7266331591936791 1.0999254232516582 0.23799911107077298 0.30783915080116586 1.7147198829717283 408.98816641395837 0.10278850211931356 0.09696057534970712 489.95454396187114 -2.690155789779003 0.3732922640579791 S(ph)EAEDEDDEDYVPYVPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEAEDEDDEDYVPYVPLR 18 0 Q9UJV9;D6RGI7;A0A499FJW5;D6RD33 Q9UJV9 DDX41 Probable ATP-dependent RNA helicase DDX41 1 S(1)EAEDEDDEDYVPYVPLR;S(1)EAEDEDDEDYVPYVPLR 319.33 1.800499999999999e-61 1155260000.0 699450.0 574090.0 471920.0 480370.0 522740.0 584880.0 542010.0 532620.0 770960.0 593910.0 True False 695684.2389162013 593198.2386052669 538362.2339978268 541184.7927465546 589307.8404772751 544448.622259426 515790.9056207283 572366.808989559 580967.2383347242 556006.1553280669 1.2512167936445209 1.066891495572122 0.9682666798538778 0.9733431681655267 1.0598944540992694 0.9792133001444535 0.9276712149281695 1.0294253103220388 1.04489353718023 1.0 19.08474132899013 4.687597621936048 2.7157759087260063 0.9977647156445741 1.285160063114148 0.8047463864071986 0.037594478876373884 0.16126206527161738 1.7179392108492952 0.009504317894273374 0.09830326639681589 48707.69994003362 -4.687597621936048 0.28739534746957385 S(ph)EALSSVLDQEEAMEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(1)EALSSVLDQEEAMEIK;S(1)EALSSVLDQEEAMEIK 251.75 5.9803e-27 48833000.0 52093.0 42569.0 43344.0 41104.0 45506.0 54147.0 50639.0 49465.0 62968.0 50555.0 True False 51812.53707607643 43985.88343149611 49446.45844719822 46307.762185511936 51300.91936480635 50403.94533832778 48189.39811023429 53156.32947818053 47450.38012797151 47328.53661768691 1.0947420051165035 0.9293734092564014 1.0447493622424793 0.9784321573172515 1.083932084763317 1.0649800086887025 1.0181890578933657 1.1231348627482336 1.0025744195572501 1.0 15.530422694673588 3.2357378065456643 24.987253848772394 1.0581150924726477 1.0082866844406784 0.08571005563439327 0.053777399029988224 125.69693391375843 1112659.0360188044 0.014304025398500397 0.0178148641610875 1720.8293575041484 -3.2357378065456643 -0.04982840803196931 S(ph)EDEDS(ph)LEEAGSPAPGPCPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-3;Q8TBB5;Q8TBB5-2 Q8TBB5-3 KLHDC4 Kelch domain-containing protein 4 2 S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR 419.69 9.112499999999996e-153 736730000.0 499860.0 417690.0 302360.0 382910.0 397810.0 509220.0 479440.0 447540.0 588460.0 490800.0 True False 497168.8092996667 431592.5591510632 344929.6598397666 431386.36673935346 448468.7454953989 474018.81997494295 456247.6555613408 480937.70736207283 443441.91796001256 459476.72380498 1.082032633084336 0.9393132160797945 0.7507010518038087 0.9388644612223074 0.9760423591897697 1.0316492553736742 0.9929722920088336 1.046707444458496 0.9651020279935372 1.0 18.809632253684153 3.1497872206512234 3.1804151925053294 1.0111895134267659 0.9150391577513771 0.18277579967797075 0.07759321364489427 0.3739365609108792 7.56620925274505 0.02416540053826458 0.03022332050638914 1411.8456518745538 -3.1497872206512234 -0.09615035567538877 S(ph)EDEDSLEEAGSPAPGPCPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-3;Q8TBB5;Q8TBB5-2 Q8TBB5-3 KLHDC4 Kelch domain-containing protein 4 1 S(1)EDEDSLEEAGSPAPGPCPR;S(1)EDEDSLEEAGSPAPGPCPR 475.54 1.4397999999999986e-224 236430000.0 84213.0 87419.0 80321.0 69175.0 63983.0 96160.0 87791.0 84795.0 95655.0 83822.0 True False 83759.60656494384 90328.68856909862 91629.49863735253 77932.5479073275 72130.8557930472 89512.6855362918 83544.2139358119 91122.83348028536 72082.10696133132 78472.4081963754 1.0673765274966118 1.1510885245557032 1.167665179945183 0.9931203807624088 0.9191874883276347 1.140689926480762 1.0646317075773235 1.1612085773161513 0.9185662657497078 1.0 16.25989785450071 S(ph)EDRRSS(ph)EEREAGEI ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDRRSSEEREAGEI 15 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 S(0.818)EDRRS(0.591)S(0.591)EEREAGEI 79.554 0.035726999999999995 22897000000.0 1005100.0 1046200.0 870010.0 1013200.0 1120100.0 1139200.0 1125200.0 1098300.0 1410600.0 1138600.0 True False 999688.6532771084 1081022.134558745 992499.8457375172 1141471.0161142626 1262738.0956471597 1060449.785388351 1070769.77731858 1180260.723054396 1062976.531071602 1065933.5731954977 0.9378526752658727 1.0141552548326385 0.9311085331163386 1.070865056527224 1.184631132183663 0.9948554131842313 1.0045370595735945 1.1072554169732771 0.9972258664158301 1.0 20.023686104412395 3.7295285205200757 24.752613958408865 1.058943868748406 0.9663504640071799 0.3103483814664375 0.060797820144649066 644.6179680650627 1766587.2130501003 0.016070087491266524 0.02531454406828844 5364.490993917926 -3.7295285205200757 -0.09259340474122613 S(ph)EEHS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEEHSPPR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 S(1)EEHS(1)PPR 103.43 0.0025214 145910000.0 42849.0 31215.0 34193.0 35904.0 39194.0 37689.0 33742.0 35626.0 34052.0 41605.0 True False 42618.30574497145 32253.972405134016 39007.07718911612 40449.44271867996 44185.123578961495 35083.64814036298 32109.770553042614 38284.59302516245 25660.340873422756 38949.73328016744 1.0941873578033454 0.8280922534983624 1.0014722542138146 1.0385037152302181 1.13441402181462 0.9007416787171426 0.8243899983107812 0.982923111431326 0.6588065876817846 1.0 15.249325828588711 2.503500513772879 23.468913149236734 0.8745620786730278 1.0096616713890683 0.28657600288927765 0.1153770251110683 484.7462217768739 431265.2737322153 0.036496797762691505 0.03428074691773497 318.78693469615104 -2.503500513772879 0.13509959271604044 S(ph)EEKET(ph)EENK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEKETEENK 10 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 S(1)EEKET(1)EENK;S(1)EEKET(1)EENK 109.01 0.052039 1907590000.0 239660.0 881910.0 803320.0 1023520.0 905650.0 475150.0 531400.0 399810.0 149516.0 533000.0 True False 238369.69718872945 911263.8412241474 916420.4734173877 1153097.5270561299 1020979.1592918923 442303.99888278975 505694.15185486444 429645.8523940431 112669.78521175488 498983.4836757416 0.4777105956148864 1.8262404889864474 1.836574763289986 2.3108931753850523 2.04611814357239 0.8864100984356742 1.013448677959617 0.861042231757 0.22579862640297726 1.0 18.928632537667784 2.6822696978382745 7.180082795181369 0.8089785125174245 1.7474248487614579 0.45138880372047885 0.4959124312516705 0.24824832137424746 27.494447131168815 0.16461128936345717 0.15555304863444 481.1380434890946 -2.6822696978382745 0.9384463362440334 S(ph)EEPSVSIPFLQTALLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEEPSVSIPFLQTALLR 17 0 Q5SW79;H0Y2V6;H0YB66 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 S(1)EEPSVSIPFLQTALLR;S(0.999)EEPS(0.001)VSIPFLQTALLR;S(1)EEPSVSIPFLQTALLR 138.05 5.1857e-06 198088000.0 79833.0 60116.0 55251.0 64799.0 61773.0 71422.0 58558.0 54605.0 99664.0 78170.0 True False 79403.18799828006 62116.924719110575 63029.86054969894 73002.54675600896 69639.42539274345 66484.76524930359 55725.32582671657 58679.902378571685 75103.14262917917 73181.12367529591 1.0850228038392988 0.8488107533675336 0.861285771305753 0.9975597953363043 0.9516036635585571 0.9084960972216822 0.7614713060975863 0.801844784987642 1.0262638622824547 1.0 16.159183947567676 2.4711282147174223 24.943977044814904 0.8640034328179411 0.9400302319043005 0.013174594392525552 0.09908994500477915 349.08527715303023 1452932.6008169397 0.03416440941719251 0.028656720855640975 295.88858755805046 -2.4711282147174223 0.07602679908635934 S(ph)EETQER ddPTM_BT-474_Trastuzumab_2h_R1 4 SEETQER 7 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(1)EETQER;S(1)EETQER;S(0.99)EET(0.01)QER;S(0.984)EET(0.016)QER 155.06 0.0017169000000000002 321967000.0 191145.0 168775.0 140535.0 141677.0 148083.0 120328.0 152799.0 170836.0 217155.0 197158.0 True False 190115.89655820603 174392.5738483582 160321.10644788222 159613.29367353008 166940.49229329368 112010.00858164446 145407.52862113557 183584.64980763075 163640.0599779195 184575.20764454402 1.0300185977541052 0.944832061000329 0.8685950214756335 0.8647602010607744 0.90445783279187 0.6068529463466945 0.7877955575765203 0.994633310456186 0.8865765996756101 1.0 17.49384925596683 4.558957003273092 1.6960790892692599 0.8576184281364182 1.0585113211025057 0.2008925554151778 0.10485311299916784 1.1153228819247256 4.16051404608153 0.029620683554357895 0.3257028125176914 36220.71368229004 -4.558957003273092 0.20089289296608748 S(ph)EGFSMDR ddPTM_BT-474_Trastuzumab_2h_R1 5 SEGFSMDR 8 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 S(1)EGFSMDR;S(1)EGFSMDR;S(1)EGFSMDR;S(1)EGFSMDR;S(1)EGFSMDR 182.46 0.00023962 2612470000.0 1530330.0 1663430.0 1592820.0 1512140.0 1555930.0 1570030.0 1518180.0 1518000.0 1647620.0 1516600.0 True False 1522090.8733156484 1718796.2619853318 1817075.2109603689 1703576.7689567946 1754068.4627803632 1461497.5215530836 1444739.8333891954 1631280.8682478105 1241586.1279768827 1419809.2895734156 1.072038959382329 1.2105824878084488 1.2798023116937856 1.1998630953236245 1.23542540231398 1.0293618532332558 1.0175590792361064 1.148943650550372 0.8744738727198493 1.0 20.43726572760046 2.7331182126244924 24.760150213484803 1.0338729420093 1.2046324833579314 0.5660797224485454 0.08020043763003691 322.6816082123728 1468031.27426973 0.025679319360897276 0.024868719094163293 540.9015334008305 -2.7331182126244924 0.17075954134863136 S(ph)EGS(ph)EYEEIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEGSEYEEIPK 11 0 P48634 P48634 PRRC2A Protein PRRC2A 2 S(1)EGS(1)EYEEIPK 116.51 0.00114 0.0 305180.0 250830.0 181790.0 192460.0 202370.0 280450.0 239360.0 242510.0 395820.0 230730.0 True False 303536.9447886852 259178.72492006328 207384.45185299413 216825.41626663186 228140.61995903554 261063.15160828878 227781.2423560036 260607.32764082812 298275.4647162634 216004.61386210858 1.4052336168266055 1.199875874343665 0.9600926949892963 1.003799929963752 1.0561840132946152 1.2085998856253335 1.0545202636338726 1.2064896345556428 1.380875433089935 1.0 17.720702603144503 1.5990921103594251 7.332241143366115 1.2235286322098176 1.1191469876364477 0.03320144760624377 0.14760621654247327 0.31200371047805486 37.04155007996062 0.07906397069316916 0.03800189319167814 39.72757995299901 -1.5990921103594251 -0.10438164457336985 S(ph)EGSEYEEIPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SEGSEYEEIPK 11 0 P48634 P48634 PRRC2A Protein PRRC2A 1 S(0.944)EGS(0.056)EYEEIPK;S(0.998)EGS(0.002)EYEEIPK;S(1)EGSEYEEIPK;S(1)EGSEYEEIPK 312.95 1.1869999999999999e-45 1756190000.0 2577340.0 2258490.0 2138160.0 1969640.0 2014880.0 2673490.0 2401300.0 2484980.0 3095410.0 2503160.0 True False 2563463.887809391 2333662.474363963 2439194.3427801174 2218996.222048261 2271463.0248705884 2488677.929018523 2285139.94514318 2670421.8260727604 2332587.681868954 2343406.1857369076 1.0939050615347268 0.9958420732042744 1.040875609881984 0.946910627595905 0.9692997478182828 1.0619917042831963 0.9751360899581285 1.1395471439506417 0.9953834277925013 1.0 21.160175609465945 S(ph)EGSEYEEIPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEGSEYEEIPKR 12 1 P48634 P48634 PRRC2A Protein PRRC2A 1 S(1)EGSEYEEIPKR 246.86 6.1004e-10 0.0 301360.0 260180.0 258880.0 237830.0 242200.0 325890.0 269770.0 262620.0 382920.0 346770.0 True False 299737.5112442437 268839.9340178686 295328.05377470213 267939.253614741 273042.7343681297 303361.9913625433 256720.19447852272 282218.0379573388 288554.49686511926 324638.84171526646 0.9232952830306634 0.8281200505688785 0.9097126277752303 0.8253456431739755 0.8410661303665241 0.9344599363393965 0.7907870577719912 0.8693292412768833 0.8888477279567305 1.0 18.308476097235747 0.7847674504403819 2.7228397035270047 0.9999405996151421 0.8625996326766839 0.45559196794628154 0.043935114763460716 0.8574909825063042 9.49542261215935 0.03863076731223688 0.010224507483972073 6.092105988429551 -0.7847674504403819 -0.1373409669384582 S(ph)EGVVAVLLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEGVVAVLLTK 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 S(1)EGVVAVLLTK;S(1)EGVVAVLLTK 139.46 4.096899999999999e-05 18152400.0 82128.0 75213.0 67984.0 64540.0 60062.0 80001.0 77076.0 76054.0 104115.0 81091.0 True False 81685.8319732786 77716.41923778142 77555.55627247885 72710.7573825647 67710.53968463505 74470.71917209748 73347.5394210868 81729.53567438688 78457.25331952336 75915.70295450215 1.0760070551178933 1.0237199447966447 1.0216009765326088 0.9577828374472375 0.8919174432885826 0.9809659434587509 0.9661708522286291 1.076582742352647 1.0334785856694815 1.0 16.212110713561835 -0.08658260344322466 7.143082824678504 1.0000046513555483 1.0028159067231026 0.00027642842426811587 0.05354929993619288 0.0 2.9604837241536026e-18 0.05656642139772092 0.013332833396934581 0.8192517854772218 0.08658260344322466 0.002811255367554333 S(ph)EPDDELLFDFLNSSQK ddPTM_BT-474_Trastuzumab_2h_R1 7 SEPDDELLFDFLNSSQK 17 0 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 1 S(1)EPDDELLFDFLNSSQK;S(1)EPDDELLFDFLNSSQK;S(1)EPDDELLFDFLNSSQK;S(1)EPDDELLFDFLNSSQK;S(1)EPDDELLFDFLNSSQK;S(1)EPDDELLFDFLNSSQK;S(1)EPDDELLFDFLNSSQK 166.35 2.4715e-09 133844000.0 193411.2 177171.9 143399.6 118919.8 140324.3 173427.1 157860.4 149292.9 186755.2 147932.8 True False 192369.89558920453 183068.95958882486 163589.0172283328 133975.03448687817 158193.76783771135 161438.49278048097 150224.08936671016 160433.89429198529 140731.88335146976 138491.6020523579 1.3890365389554633 1.3218776942129251 1.1812197620942144 0.9673874263959182 1.1422625306760832 1.1656915682111022 1.0847162365117036 1.1584377096838834 1.0161762970888655 1.0 17.079438970243775 4.1915812278724704 2.8970276300554767 1.092669511233106 1.3716404495342436 0.7329254713768765 0.0664866679774558 0.12778181606208874 2.138886800201879 0.01671919828432238 0.048732501782020106 15544.660017157117 -4.1915812278724704 0.2789709383011376 S(ph)EPDDELLFDFLNSSQKEPTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEPDDELLFDFLNSSQKEPTGR 22 1 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 1 S(1)EPDDELLFDFLNSSQKEPTGR;S(1)EPDDELLFDFLNSSQKEPTGR;S(1)EPDDELLFDFLNSSQKEPTGR 126.46 1.1910999999999997e-05 234471000.0 110846.0 120115.0 92994.0 101896.0 101948.0 113679.0 105644.0 102167.0 157124.0 109625.0 True False 110249.21745214843 124112.95516394931 106086.74688166192 114796.0231523677 114930.47350686238 105820.63830158192 100533.59612072901 109791.22033351402 118402.89555373191 102628.63864531566 1.0742539208102475 1.2093403634913584 1.0336953532853288 1.1185573994516531 1.1198674660789552 1.0311024261687598 0.9795861803075542 1.0697912569312376 1.153702291257434 1.0 16.647073847353344 2.743352177528785 24.316749206722957 1.0470224369007113 1.112707593437079 0.2226265990704499 0.06004682509353393 437.80060059404497 2221797.203855864 0.01850472667094446 0.01904035239913631 553.7990131700794 -2.743352177528785 0.06568515653636764 S(ph)ESDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SESDKDVK 8 1 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 S(0.969)ES(0.031)DKDVK;S(0.996)ES(0.004)DKDVK;S(0.814)ES(0.186)DKDVK;S(0.987)ES(0.013)DKDVK 125.72 0.00075694 3930530000.0 8257760.0 4398940.0 3537670.0 2940440.0 3125180.0 3387210.0 5232510.0 5384590.0 10165790.0 5047190.0 True False 8213301.137683387 4545356.058684612 4035743.1860211273 3312699.4025098924 3523153.1486069 3153060.1453346815 4979393.501170673 5786415.4481939925 7660567.269107035 4725074.01308324 1.7382375630395646 0.9619650498804869 0.8541121630786254 0.7010894206815325 0.7456291983684603 0.6673038637287342 1.053823387185735 1.2246190074847523 1.6212586824874529 1.0 22.17190549706463 1.7393432161551896 3.0550795807106823 1.3326484594408574 0.9203011748064807 0.17490652599407952 0.3197985779007927 0.3463343107575634 6.795108483202841 0.188195288037004 0.08838762256733405 54.87104309126895 -1.7393432161551896 -0.41234728463437675 S(ph)ESELIDELSEDFDR ddPTM_BT-474_Trastuzumab_2h_R1 6 SESELIDELSEDFDR 15 0 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0Y7F0;E7EQ12;E7EQA0;D6RC54;P20810-5;E9PCH5;P20810-2;P20810-3;A0A0C4DGB5;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 1 S(0.997)ES(0.003)ELIDELSEDFDR;S(0.999)ES(0.001)ELIDELSEDFDR;S(0.989)ES(0.011)ELIDELSEDFDR;S(0.999)ES(0.001)ELIDELSEDFDR;S(0.999)ES(0.001)ELIDELSEDFDR;S(1)ESELIDELSEDFDR 393.38 1.3002e-114 1326478000.0 573356.0 597825.0 553019.0 551607.0 528011.0 620636.0 595714.0 502782.0 701518.0 573614.0 True False 570269.1150018396 617723.2437321554 630879.2682726823 621440.3896424595 595250.0710836101 577732.8941399959 566897.0379715258 540302.145915265 528638.288759597 537005.463424347 1.061942855041695 1.1503109107923999 1.1748097761421756 1.1572328997915449 1.1084618530468053 1.0758417436871879 1.0556634458736562 1.0061390110817419 0.9844188276756168 1.0 19.0345772405155 2.244177061487365 1.1173195348696492 0.9913138310923585 1.1387500347723865 0.7954343027192396 0.029510260795279176 0.21657778033888286 0.5195323549536209 0.020756081120517692 0.011783415707300697 175.4595703199976 -2.244177061487365 0.14743620368002797 S(ph)ESELIDELSEDFDRSECK ddPTM_BT-474_Trastuzumab_2h_R1 3 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0Y7F0;E7EQ12;E7EQA0;D6RC54;P20810-5;E9PCH5;P20810-2;P20810-3;A0A0C4DGB5;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 1 S(0.959)ES(0.041)ELIDELSEDFDRSECK;S(1)ESELIDELSEDFDRSECK;S(0.964)ES(0.036)ELIDELSEDFDRSECK 226.16 9.4875e-20 340559000.0 186449.0 193313.0 287696.0 175195.0 202333.0 296238.0 368450.0 318751.0 403439.0 465159.0 True False 185445.1793004314 199747.30634482382 328201.09610154 197374.66903685202 228098.90822835156 275759.7643292435 350626.665884315 342537.81820478145 304016.8642556328 435472.1543773444 0.4258485357475689 0.45869134073665524 0.7536672386568899 0.4532429158853251 0.5237967707820412 0.6332431627540822 0.8051643770097197 0.7865894862888668 0.6981315824666868 1.0 18.732220945210248 2.0003055683977267 0.19006085393314762 1.1194678886934164 0.2895670561434595 0.6997058780063168 0.09801431635950726 2.081512509618399 0.3315706778936905 0.49020320731774425 0.6805258258681375 100.07038448200946 -2.0003055683977267 -0.8299008325499568 S(ph)ESETSTMAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SESETSTMAAK 11 0 Q96B23-2;Q96B23;A0A087WVF1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 S(0.996)ES(0.004)ETSTMAAK;S(0.979)ES(0.021)ETSTMAAK;S(0.998)ES(0.002)ETSTMAAK 285.32 1.0757e-27 2007930000.0 1684650.0 1399850.0 1226100.0 1247930.0 1247550.0 1533810.0 1488080.0 1594990.0 2161230.0 1541110.0 True False 1675580.0315822125 1446443.1610228056 1398724.2225477525 1405917.8100468556 1406418.0976918242 1427781.324900375 1416095.885382363 1714016.2529951097 1628623.8254982813 1442755.0403893492 1.161375274856106 1.0025563041058314 0.9694814319763427 0.9744674395089602 0.9748141980583765 0.9896214429547698 0.9815220503407205 1.1880161254072323 1.1288290665467178 1.0 20.460394940521848 1.7521285501522172 24.999999999994532 1.1223350755356705 1.0027866140177677 0.2858570097648817 0.06913149419752716 4.251123733404243 7844.4180092896295 0.03118096091204808 0.017291477152437708 56.51042195880762 -1.7521285501522172 -0.11954846151790277 S(ph)ESEVEEAAAIIAQRPDNPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SESEVEEAAAIIAQRPDNPR 20 1 Q16643;Q16643-3;Q16643-2;D6R9W4;D6R9Q9 Q16643 DBN1 Drebrin 1 S(0.988)ES(0.012)EVEEAAAIIAQRPDNPR;S(0.979)ES(0.021)EVEEAAAIIAQRPDNPR;S(0.652)ES(0.348)EVEEAAAIIAQRPDNPR;S(0.583)ES(0.417)EVEEAAAIIAQRPDNPR;S(0.996)ES(0.004)EVEEAAAIIAQRPDNPR 242.09 5.4527e-30 1523080000.0 562223.0 643035.0 589115.0 482984.0 511866.0 660423.0 645828.0 598095.0 793966.0 726986.0 True False 559196.0538368471 664438.0312521333 672057.2713206263 544129.7248785349 577049.1010325224 614769.5124785195 614586.8323374557 642727.8859648721 598303.7178993296 680589.1310759716 0.8216352984550176 0.9762689424700268 0.9874640082161509 0.7994981113176133 0.8478670532399504 0.9032902296082878 0.9030218148882716 0.9443698945775947 0.8790967862702221 1.0 19.376424586262797 -0.9133286292454345 5.5065109098507765 1.0000001033066515 0.9004828395021136 0.21526454967900532 0.059068005590978134 7.56185504806257e-08 1.490296025545568e-08 0.057666701870372 0.01359215790395572 0.12208754779767078 0.9133286292454345 -0.09951726380453785 S(ph)ESLDPDSSMDTTLILK ddPTM_BT-474_Trastuzumab_2h_R1 1 SESLDPDSSMDTTLILK 17 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 S(0.975)ES(0.025)LDPDSSMDTTLILK 129.38 3.5462e-05 36998000.0 65804.0 65352.0 55526.0 51767.0 55593.0 78000.0 66054.0 61903.0 104770.0 74424.0 True False 65449.71857551173 67527.20181388178 63343.57815935608 58320.6968922099 62672.439024473235 72608.04359225002 62858.715669215795 66522.51619706482 78950.83734607381 69674.19660240789 0.939368112832317 0.9691852236089952 0.9091396994618087 0.8370487172606218 0.8995071644974996 1.0421080849569602 0.9021807029640504 0.9547654575290194 1.1331431318340501 1.0 16.0883368415803 1.3767095589374847 6.2528575091996865 1.0648048963048247 0.9293417382215556 0.4663554278716441 0.058232948614409245 0.1805501815768296 9.056706806792235 0.04007926068438364 0.014523286384238084 23.807267894809666 -1.3767095589374847 -0.13546315808326903 S(ph)ESNEDLFGLVPFDEITGSQQQK ddPTM_BT-474_Trastuzumab_2h_R1 4 SESNEDLFGLVPFDEITGSQQQK 23 0 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 S(0.5)ES(0.5)NEDLFGLVPFDEITGSQQQK;S(0.5)ES(0.5)NEDLFGLVPFDEITGSQQQK;S(0.5)ES(0.5)NEDLFGLVPFDEITGSQQQK;S(0.579)ES(0.421)NEDLFGLVPFDEITGSQQQK 251.44 2.6323e-39 408592000.0 504281.0 407587.0 387587.0 371890.0 372807.0 540043.0 532048.0 485237.0 658620.0 542795.0 True False 501566.0071268861 421153.2869034555 442155.8806334027 418971.23586925917 420281.7616497904 502711.0985344811 506310.80561926495 521447.8489235596 496311.9260558469 508153.3583898202 0.9870366865550051 0.8287917022490202 0.8701229133552457 0.8244976225225561 0.8270766191165841 0.9892901232167707 0.9963740222510903 1.0261623588907598 0.9766971286552251 1.0 18.95490443599937 2.685093670652322 6.719415412112062 1.002121662360535 0.8631996058493963 0.6703182723509782 0.0455691172126715 0.13403655179826032 13.85221731331097 0.014514930748751325 0.0137377986724642 484.2768073932485 -2.685093670652322 -0.13892205651113865 S(ph)ESPEPGYVVTSSGLLLPVLLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SESPEPGYVVTSSGLLLPVLLPR 23 0 Q96Q42 Q96Q42 ALS2 Alsin 1 S(0.475)ES(0.475)PEPGY(0.049)VVT(0.001)SSGLLLPVLLPR 99.508 0.0017010000000000007 14973000.0 17569.0 19075.0 17046.0 17144.0 21259.0 22124.0 21030.0 20100.0 28397.0 20870.0 True False 17474.41045609941 19709.89984391901 19445.92863351193 19314.428642186085 23966.207638034964 20594.61995429413 20012.69855759843 21599.964065731903 21398.939850305007 19538.058732294066 0.8943780288272092 1.008795198846491 0.9952845827702494 0.988554129498119 1.2266422148901466 1.0540770829117068 1.0242930903119787 1.1055327636020336 1.0952439105393377 1.0 14.25399951029372 4.468836157304379 0.9313652686994852 1.08071485060542 0.8612168314986484 0.4040719061313176 0.06506838876357698 1.4175576205880918 1.2975871048449665 0.021517820836248456 0.2889939400621688 29433.110256529333 -4.468836157304379 -0.2194980191067717 S(ph)ESPKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 S(0.528)ES(0.472)PKEPEQLR 56.147 0.07318 341820000.0 151760.0 130960.0 106400.0 96651.0 117080.0 168160.0 152540.0 127630.0 206460.0 145190.0 True False 150942.9410221209 135318.92443300813 121380.195154621 108887.00669014982 131989.44401247136 156535.49500606104 145161.05744061174 137154.39869200802 155580.699422262 135923.84989658705 1.1104963634929457 0.9955495267089686 0.8930014507900483 0.8010883062317079 0.971054337505088 1.1516411220338127 1.067958695630329 1.0090532220530628 1.1446166330679286 1.0 17.052439095432785 2.9780433839309786 23.446863765622094 1.0683538152560357 0.9413188117637169 0.32640018327260667 0.0863150797322403 425.40535333556403 454279.2206745686 0.02760083403363891 0.029551072198447728 950.6997592485939 -2.9780433839309786 -0.12703500349231878 S(ph)ET(ph)PPHWR ddPTM_BT-474_Trastuzumab_2h_R1 5 SETPPHWR 8 0 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 S(1)ET(1)PPHWR;S(1)ET(1)PPHWR;S(1)ET(1)PPHWR;S(1)ET(1)PPHWR;S(1)ET(1)PPHWR 135.99 0.0014379000000000002 3435350000.0 4032640.0 3432290.0 2455803.0 2862400.0 2812760.0 3837640.0 3247320.0 3336910.0 4663740.0 3328740.0 True False 4010928.714308426 3546531.6977868844 2801558.716177668 3224779.546511517 3170948.313465315 3572352.9796328577 3090234.7256329292 3585927.1686856416 3514423.7679142733 3116296.963322304 1.287081674665674 1.1380596071325322 0.8990024856908722 1.034811375316927 1.0175372728550063 1.1463454932819848 0.9916367926432821 1.1507013647578253 1.127756375364023 1.0 21.57140128895564 1.6972126310910836 24.9999999968059 1.105754652176218 1.0684043605579252 0.0009075770231933289 0.10523354274189778 2.8657310337483843 1711.1145575680084 0.049583409144544455 0.02749645929349739 49.798083730923324 -1.6972126310910836 -0.03735029161829284 S(ph)ETPPVPPPPPYLASYPGFPENGAPGPPISR ddPTM_BT-474_Trastuzumab_2h_R1 2 SETPPVPPPPPYLASYPGFPENGAPGPPISR 31 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 S(0.5)ET(0.5)PPVPPPPPYLASYPGFPENGAPGPPISR;S(0.5)ET(0.5)PPVPPPPPYLASYPGFPENGAPGPPISR 134.67 1.4223e-06 347260000.0 238490.0 239990.0 226541.0 208198.0 231458.0 273137.0 273100.0 237044.0 315163.0 264703.0 True False 237205.9963387298 247977.9220729816 258436.00367032897 234555.84545297816 260932.80434095178 254255.68208533883 259889.10965668727 254733.42696504266 237495.30161783574 247809.42791636015 0.9572113471759873 1.0006799344078157 1.0428820478838097 0.946517037003712 1.0529575348885476 1.0260129496411026 1.0487458521731636 1.027940821731042 0.9583787978316725 1.0 17.91887155033114 3.219673608913314 24.99954217284997 1.0232314279414747 0.9918166180730525 0.15690020105564084 0.03499417921126818 447.5793201523746 592431.2882460554 0.00999881389416745 0.011969560713611119 1658.3401246626163 -3.219673608913314 -0.031414809868422156 S(ph)FDAVLEALSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFDAVLEALSR 11 0 Q6P1N0-2;Q6P1N0;K7EJY5 Q6P1N0-2 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 S(1)FDAVLEALSR;S(1)FDAVLEALSR 143.55 3.8951e-05 38431000.0 44006.8 36004.4 33153.4 41692.0 31357.0 25395.7 34947.8 32689.2 42270.1 37153.5 True False 43769.87227841514 37202.78468888059 37821.11054548133 46970.20292522293 35350.12808249973 23640.155034047497 33257.2414004393 35128.6340963942 31853.200245320906 34782.33182128832 1.2583938449930505 1.0695885738779263 1.0873655837626488 1.350404083502967 1.016324272453289 0.6796598674151766 0.9561533013748206 1.0099562696625741 0.9157867968422216 1.0 15.08606703428253 3.008427140843842 24.55972488878152 0.9169886711248472 1.1763087411731366 0.5706987377390735 0.11390406524027644 121.64717488838096 354519.75860084733 0.033561066773396694 0.04004891233414901 1019.5936941643984 -3.008427140843842 0.2593200700482894 S(ph)FDAVVFDVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFDAVVFDVLK 11 0 Q86X27;Q86X27-3;Q86X27-2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 S(1)FDAVVFDVLK 105.65 0.0025567 20798000.0 55714.0 42526.0 48020.0 44167.0 37684.0 55547.0 50891.0 50063.0 84882.0 55059.0 True False 55414.042014407336 43941.45220249015 54780.79860267763 49758.53767145549 42482.834029432684 51707.1666335733 48429.207907500815 53798.955274762986 63963.96846052717 51545.08748161855 1.0750596171588318 0.852485743052819 1.0627743841197856 0.9653400566872611 0.8241878344775814 1.0031444151106068 0.9395504067147255 1.0437261415832921 1.2409323872684725 1.0 15.653547317256832 1.52760163261333 4.386552381465031 1.127469327706924 0.9577055342665515 0.3237693409914676 0.09269605556477167 0.16948104130306516 7.161486725869801 0.052997464906293076 0.022307463148663276 33.69780653604513 -1.52760163261333 -0.16976379344037262 S(ph)FDEQNVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFDEQNVPK 9 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 S(1)FDEQNVPK;S(1)FDEQNVPK;S(1)FDEQNVPK;S(1)FDEQNVPK 159.44 6.9281e-05 988960000.0 1952530.0 1176790.0 996558.0 1025160.0 866114.0 1308830.0 1087968.0 1227580.0 1917980.0 1365760.0 True False 1942017.7954264767 1215958.7437654224 1136864.704162583 1154945.1508879778 976408.4840401254 1218353.6627544183 1035338.8313986334 1319188.2531249344 1445319.528615275 1278596.0275140377 1.5188673776832577 0.9510108881924181 0.8891508183182599 0.9032916777737272 0.7636567477364585 0.952883973152374 0.8097466354651774 1.0317474986136315 1.1303957602819994 1.0 20.28612908595831 4.73813239819718 5.492047738577964 0.9280186288537521 1.5403853887602539 0.751677292387287 0.10032283791944294 0.07116849222895093 8.325384080860882 0.024615792804418255 0.16411835960312052 54718.275057138235 -4.73813239819718 0.6123667599065018 S(ph)FDEVEGVFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFDEVEGVFGR 11 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JW88;Q6Y7W6-4;Q6Y7W6-5;E7ESB6 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 S(1)FDEVEGVFGR;S(1)FDEVEGVFGR 144.28 3.8588e-05 57174000.0 79034.0 54928.0 47856.0 52609.0 50348.0 50928.0 53909.0 38054.0 66284.0 52042.0 True False 78608.48972550292 56756.24527532279 54593.70882819119 59269.29400587774 56759.51936402385 47407.46723161685 51301.21571762119 40893.7827142966 49949.19636009504 48720.635004602205 1.6134537186979907 1.1649323796777593 1.120545921107847 1.2165131673731078 1.1649995809509108 0.9730469897844863 1.0529668940639878 0.8393524162900119 1.0252164479255408 1.0 15.572245316406592 7.999999999999999 0.4188586993255648 0.9632911047110784 11.56704648971084 0.7660995591156755 0.09489644738574024 37.93100422540926 0.4877347654660283 0.06593644848385097 336.64931691470895 99999999.99999979 -7.999999999999999 10.603755384999761 S(ph)FDGNTLLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFDGNTLLNR 10 0 Q05209;Q05209-2;Q05209-3 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 S(1)FDGNTLLNR;S(1)FDGNTLLNR;S(1)FDGNTLLNR 196.11 3.560800000000001e-07 1405120000.0 1033930.0 1114760.0 852000.0 1083410.0 860380.0 926850.0 945880.0 879120.0 1100200.0 1041460.0 True False 1028363.4357604219 1151864.1127133493 971954.1942832429 1220569.5949154715 969944.2931282041 862779.0410702187 900124.1707875045 944724.3984809066 829070.4519246953 974993.1311612349 1.054739159583229 1.1814074129337278 0.9968831197052921 1.2518750706087032 0.994821668100351 0.8849078147275077 0.9232107817164208 0.9689549272575103 0.8503346592167854 1.0 19.89503252953031 3.0109533017297316 24.35468828886858 0.9284578673416836 1.1174814091027594 0.6062672587283335 0.0744408427846528 100.74171536952358 223996.99759107627 0.019763058464171906 0.023598846874139223 1025.5416471714705 -3.0109533017297316 0.18902354176107583 S(ph)FDHLISDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFDHLISDTK 10 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 S(0.999)FDHLIS(0.001)DTK 52.6 0.096015 318850000.0 184180.0 316370.0 272140.0 303010.0 320610.0 211880.0 209910.0 183290.0 127200.0 213720.0 True False 183188.39534432162 326900.1842002961 310454.94651671563 341371.03493168467 361437.7830956478 197233.23431187135 199755.85136592883 196968.0305277614 95853.26439267509 200080.2066251022 0.915574800897565 1.63384569475591 1.5516524685444109 1.7061709435922585 1.8064644633883618 0.9857708447964304 0.9983788738294281 0.984445357440218 0.47907419734066425 1.0 17.61021892695666 2.624801594043703 5.667706329124083 0.8956365812970967 1.5390410832117722 0.588817235440068 0.26509895303163244 0.16696083085961283 7.245864910896382 0.08697591109513944 0.08174346302954051 421.5038968150724 -2.624801594043703 0.6434045019146756 S(ph)FDWGYEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SFDWGYEER 9 0 P18615;P18615-3;A0A0A0MT02;E9PD43;A0A0A0MSN9;A0A0G2JI50 P18615 NELFE Negative elongation factor E 1 S(1)FDWGYEER 141.71 0.0014274 0.0 42735.0 29567.0 34097.0 31955.0 34997.0 40118.0 26584.0 30544.0 40930.0 36938.0 True False 42504.91950830483 30551.119721371066 38897.5612235631 36000.49972358005 39453.66050652945 37344.737087613954 25298.03035925806 32823.34837928932 30843.349933900918 34580.58521578718 1.2291555866700583 0.8834760756860608 1.1248381420047535 1.041061031759076 1.140919399146477 1.0799336348583497 0.7315674446049767 0.9491842944376886 0.8919267774514097 1.0 15.07767466382085 2.279819889221177 24.949177786487468 0.8897699686439566 1.0767477529871459 0.4421396193528262 0.1044078059333159 126.08857997764298 76244.32968968242 0.033733757280460894 0.028223416743801088 190.46706483830772 -2.279819889221177 0.18697778434318924 S(ph)FDYNYR ddPTM_BT-474_Trastuzumab_2h_R1 12 SFDYNYR 7 0 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 1 S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR 179.36 0.00073663 70738710000.0 8376661.5 8057067.2 7344334.8 7210003.9 7180901.9 8265388.2 8031386.399999999 7481182.8 9580325.9 7746852.4 True False 8331562.485218582 8325241.811152025 8378353.301737532 8122789.654481645 8095347.19242485 7694021.368364984 7642877.5569565175 8039466.649212512 7219382.9517350225 7252441.647417979 1.1487941427539499 1.1479226191521286 1.1552458756728365 1.1200075849453441 1.1162236921005717 1.0608870422424173 1.0538350983737375 1.1085186258719821 0.9954417150402408 1.0 22.790035351981935 2.425214076853649 0.31139874937839657 0.991638620212028 1.184706321066573 0.7932088366747455 0.02580115835498652 0.9164230815996501 0.21298404455231595 0.037236801969870094 0.06311681210222361 266.2036934764908 -2.425214076853649 0.19306770085454494 S(ph)FDYNYRR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFDYNYRR 8 1 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.999)FDY(0.001)NYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR 117.28 0.0012917 1558420000.0 1168880.0 1776920.0 1725700.0 1983110.0 1699580.0 1683060.0 2027420.0 1814940.0 2876080.0 2331030.0 True False 1162586.8799547777 1836063.7080291768 1968663.5599467044 2234171.522667152 1916011.438800107 1566714.023697082 1929345.9491034811 1950380.0388785817 2167308.621497527 2182261.6697048107 0.5327440316137881 0.8413581806060575 0.9021207618117587 1.0237871808330679 0.8779934438656393 0.7179313303472941 0.8841038523874449 0.8937425176616903 0.9931479123631832 1.0 21.057392671421738 4.7440509928794485 2.8816455362771904 0.9014191731449418 0.46526266649527465 0.6529315776746978 0.08229882518086316 0.2698194759070264 3.1414955634825703 0.020919374940286183 0.27654069493610645 55469.08384055806 -4.7440509928794485 -0.43615650664966715 S(ph)FEDLTDHPVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFEDLTDHPVTR 12 0 P78536 P78536 ADAM17 Disintegrin and metalloproteinase domain-containing protein 17 1 S(1)FEDLTDHPVTR 98.421 0.0028136 332660000.0 634470.0 686390.0 619730.0 685560.0 701280.0 809310.0 762820.0 679330.0 969490.0 830640.0 True False 631054.0840162442 709236.0762184828 706982.5972102744 772351.8257079491 790583.8511877856 753364.3046108189 725919.4823446147 730025.054167844 730572.1800004296 777627.8440533173 0.8115116875534314 0.9120507729271262 0.9091528841420972 0.9932152399303664 1.0166609352192642 0.9687980058481099 0.9335050022910995 0.9387846123958886 0.9394881955260062 1.0 19.568720352020488 4.75887973526339 1.2912508470743123 0.9636237158524271 0.7432459040518848 0.7149287570690794 0.029904459274428825 0.8734290576664742 1.2228283768963664 0.009233512679793955 0.25802193958504355 57395.75000082372 -4.75887973526339 -0.22037781180054228 S(ph)FEEEGEHLGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFEEEGEHLGSR 12 0 Q9BXW6-4;Q9BXW6 Q9BXW6-4 OSBPL1A Oxysterol-binding protein-related protein 1 1 S(1)FEEEGEHLGSR;S(1)FEEEGEHLGSR 210.37 2.8546e-08 1414790000.0 762720.0 858800.0 639380.0 798580.0 916250.0 924300.0 813500.0 884300.0 919420.0 930540.0 True False 758613.6002661593 887384.6388444363 729399.1464094128 899680.1461197488 1032929.0064607707 860405.3165681625 774147.8971282141 950290.9563844147 692841.2605968036 871152.1405246253 0.8708164337509484 1.0186333678868487 0.8372810126715111 1.032747443607202 1.1857044922586313 0.9876636657863335 0.8886483326115766 1.0908438516975123 0.7953160284718588 1.0 19.732565171691363 3.711081938802477 24.600886416780583 1.0067777625009873 0.9198825435010124 0.11562507751015028 0.10854512914666178 1243.382832473685 1113165.5529069907 0.028435494580781828 0.044064539653484856 5141.406458954117 -3.711081938802477 -0.08689521899997488 S(ph)FEEKVENLK ddPTM_BT-474_Trastuzumab_2h_R1 8 SFEEKVENLK 10 1 H0YC42;P55327-2;P55327-4;P55327-3 H0YC42;P55327-2 1 S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK 182.89 1.0679e-06 15480590000.0 10104323.0 5946138.0 5193549.0 5810298.0 5290512.0 7723610.0 7286796.0 6988955.0 12364070.0 8588080.0 True False 10049922.447663821 6144051.608813675 5924755.556062844 6545881.1310567185 5964227.343878625 7189695.020122289 6934305.839216081 7510506.311294387 9317110.618549861 8039981.381774792 1.2499932487959746 0.7641872931125372 0.7369116014986317 0.8141662051475724 0.7418210392126613 0.8942427449421771 0.8624778478884192 0.9341447392302884 1.1588472878395084 1.0 22.938760729876105 1.461990378588577 3.561870228645697 1.077700870130281 0.8529017085405459 0.24700933933578584 0.14444242914271305 0.27983530669860035 6.812979667442411 0.10112386471293619 0.036546842494489536 28.972794003191094 -1.461990378588577 -0.22479916158973512 S(ph)FEERVETTVTSLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFEERVETTVTSLK 14 1 Q16890-5;E9PPQ1;J3KNE7;Q16890;E9PNK6 Q16890-5 TPD52L1 Tumor protein D53 1 S(1)FEERVETTVTSLK;S(1)FEERVETTVTSLK;S(1)FEERVETTVTSLK;S(1)FEERVETTVTSLK 171.35 1.8345e-06 343697000.0 257827.0 253434.0 221342.0 332592.0 306826.0 285176.0 301834.0 260848.0 549670.0 369081.0 True False 256438.88807927273 261869.39748591158 252505.02966084707 374698.1130985742 345898.4723998172 265462.4543520963 287233.1363021475 280313.8023193052 414211.1937006434 345525.934593858 0.7421697256407077 0.7578863734026826 0.7307845935143751 1.0844283325331456 1.001078176103907 0.7682851785471014 0.8312925530170994 0.8112670403418336 1.198784670642799 1.0 18.39843447537084 3.774964177671143 24.722598008912215 0.9280722365521106 0.7450407619444794 0.36281609881405397 0.12536111584471166 659.8062951566844 448089.21766584093 0.03347416126884621 0.06034393519446428 5956.130129826072 -3.774964177671143 -0.18303147460763114 S(ph)FEMTEFNQALEEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFEMTEFNQALEEIK 15 0 Q9BVS4-2;Q9BVS4;H0Y919 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 S(0.986)FEMT(0.014)EFNQALEEIK;S(0.994)FEMT(0.006)EFNQALEEIK 83.729 0.0090229 29549000.0 56442.0 42159.0 38347.0 31347.0 33802.0 50162.0 46458.0 48051.0 76054.0 52203.0 True False 56138.12254329571 43562.23682934632 43745.92428190088 35315.52698591966 38106.48433984933 46694.41900864676 44210.649053205314 51636.809618034014 57311.51077138781 48871.35984676314 1.1486916410617098 0.8913653511164075 0.8951239421016085 0.7226221471359098 0.7797303872724797 0.9554556933766073 0.9046330855500737 1.0565863069892465 1.1727013725643993 1.0 15.576701627716748 1.7043266787767974 3.0997331828520855 1.0955971247998404 0.8876323733391509 0.3392122413849098 0.11266419461151454 0.23670627679601927 5.0830860295252025 0.06928124586923864 0.031516393914798484 50.620528932486216 -1.7043266787767974 -0.2079647514606895 S(ph)FEVEEVETPNSTPPR ddPTM_BT-474_Trastuzumab_2h_R1 8 SFEVEEVETPNSTPPR 16 0 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;K7ENL0;K7EPY1;K7EJV0 Q9UHD8 SEPT9 Septin-9 1 S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR 344.48 7.644199999999997e-73 9268530000.0 1648996.0 1500422.0 1239606.0 1447266.0 1552762.0 1595406.0 1191081.0 1093708.0 1750614.0 1351509.0 True False 1640117.9887566804 1550362.639245749 1414131.7499514963 1630489.727208473 1750497.0367585714 1485119.3384017618 1133463.8616587212 1175326.0446966917 1319198.636725776 1265254.5385349325 1.2962751278930886 1.225336556422038 1.1176658189181063 1.2886653851457073 1.38351373849685 1.1737712003162746 0.895838605701573 0.9289245830784602 1.0426349770326107 1.0 20.270996218703488 2.3660502389305607 4.810753814417699 0.956442242739203 1.255775664208205 0.7832040505590411 0.07329044121500049 0.09705525450504514 3.695029240582946 0.02754570558959514 0.022777858880080788 232.30055047270403 -2.3660502389305607 0.299333421469002 S(ph)FEVEEVETPNSTPPRR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFEVEEVETPNSTPPRR 17 1 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;K7ENL0;K7EPY1;K7EJV0 Q9UHD8 SEPT9 Septin-9 1 S(1)FEVEEVETPNSTPPRR;S(1)FEVEEVETPNSTPPRR 198.49 8.6676e-12 850240000.0 36621.0 22580.1 29383.0 31134.0 27716.0 10342.0 26696.0 22251.0 42191.0 27911.0 True False 36423.8366049756 23331.6649785413 33519.87099838562 35075.56120775906 31245.468314397494 9627.081882449365 25404.612491376494 23911.48260828859 31793.593380435235 26129.69608419069 1.3939632702813254 0.8929175794225065 1.2828266693337556 1.3423639178482796 1.195783839724872 0.36843451417998163 0.9722505921814798 0.9151075669324683 1.2167609327714832 1.0 14.673402724246388 2.952294783161444 24.998674869725132 0.8864011484859666 1.2156325726326174 0.3250528239089846 0.23559469242007441 477.3048250484167 250118.90394247888 0.07116740097477187 0.07548613506936434 895.9727126071249 -2.952294783161444 0.32923142414665074 S(ph)FGHFPGPEFLDVEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SFGHFPGPEFLDVEK 15 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 S(1)FGHFPGPEFLDVEK;S(1)FGHFPGPEFLDVEK;S(1)FGHFPGPEFLDVEK 263.08 3.1443e-25 402684000.0 1150994.0 660817.0 637863.0 758604.0 511734.0 748305.0 742433.0 822563.0 1304921.0 841202.0 True False 1144797.1761914538 682811.8943726886 727668.5659954137 854643.188618579 576900.2916149476 696576.4366704968 706518.6794205176 883946.827950281 983340.7045955512 787515.768170734 1.4536815927516271 0.8670453620995363 0.924005074445258 1.085239462066608 0.7325571308305222 0.8845237959977945 0.8971486133688993 1.1224496875834498 1.2486616069665315 1.0 19.586949284837015 -0.22024656724120772 7.276533032455965 1.0000113526329408 1.0080876373001124 0.0 0.20147363138470226 0.0 9.930670536902434e-18 0.18974686122126233 0.04472376412953295 0.6022175847507405 0.22024656724120772 0.008076284667171585 S(ph)FGNPFEGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFGNPFEGSR 10 0 Q96RR4-6;Q96RR4-5;Q96RR4-2;Q96RR4-3;Q96RR4-4;Q96RR4-7;Q96RR4;F5GZ00 Q96RR4-6 CAMKK2 Calcium/calmodulin-dependent protein kinase kinase 2 1 S(1)FGNPFEGSR;S(1)FGNPFEGSR;S(1)FGNPFEGSR 122.34 0.00051506 353809000.0 271430.0 368053.0 371805.0 317289.0 354188.0 340413.0 358991.0 325462.0 320530.0 354038.0 True False 269968.6510387081 380303.4216122628 424151.9122130065 357457.7548676258 399291.74236324907 316881.05055600824 341625.23385120364 349749.62710254884 241539.67638195143 331442.99173281866 0.814525145417267 1.1474172967845744 1.279713020919513 1.078489404765505 1.20470715122293 0.9560650201089512 1.030720945599577 1.0552331345852908 0.7287517986702833 1.0 18.33840122224957 1.366633395051401 7.142818390473381 0.865697146040946 1.0801424749766118 0.2684753646254505 0.13609598438209208 0.2695694965836063 15.426413006213526 0.09056204538378947 0.03294493651716468 23.26126854061695 -1.366633395051401 0.2144453289356657 S(ph)FKPWLEIFKQNQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFKPWLEIFKQNQQK 15 2 Q96JM4-2;Q96JM4 Q96JM4-2 LRRIQ1 Leucine-rich repeat and IQ domain-containing protein 1 1 S(1)FKPWLEIFKQNQQK 58.487 0.053902 1070600000.0 789820.0 1055300.0 1134900.0 1079300.0 1170100.0 1174900.0 1193700.0 1167700.0 1041900.0 1482900.0 True False 785567.696877251 1090425.0225576775 1294684.0552723627 1215939.2693368767 1319105.2992739389 1093681.9284171113 1135956.17062317 1254839.703460456 785137.70574472 1388260.0524254357 0.5658649440389659 0.7854616436254798 0.9325947635030007 0.8758728360817581 0.9501860238428123 0.7878076780401009 0.8182589196012199 0.9038938355015832 0.565555210187747 1.0 20.404846411882176 4.690013132945061 3.320605691298672 0.8537270459994157 0.5414582701483989 0.3661870151919535 0.1136322501425012 0.27986340947218863 5.134971601313962 0.026040832630971893 0.20674094347159097 48979.36303684709 -4.690013132945061 -0.31226877585101687 S(ph)FLESNYFTKPNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFLESNYFTKPNLK 14 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 S(1)FLESNYFTKPNLK;S(1)FLESNYFTKPNLK 166.6 2.2891e-06 1178230000.0 1195290.0 981200.0 946100.0 839560.0 830330.0 1203860.0 1147960.0 1130360.0 1663140.0 1287100.0 True False 1188854.6914492035 1013858.6488520744 1079302.6563513817 945848.2099179728 936067.6037485102 1120639.9917816173 1092428.7891669376 1214713.203051777 1253281.4319342293 1204956.1760582516 0.9866372861279316 0.8414070727191834 0.8957194276409971 0.7849648217183355 0.776847840898786 0.9300255179798687 0.9066128800970815 1.0080974123270137 1.040105405355125 1.0 20.20054924629132 1.922399914537919 1.655130462292947 1.0248070094265467 0.8583244374351081 0.5529871960219667 0.05931741528549256 0.27230591392476583 1.3907887153773468 0.040438976561681834 0.01860878208620171 83.63728269994586 -1.922399914537919 -0.16648257199143857 S(ph)FNDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFNDFR 6 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 S(1)FNDFR;S(1)FNDFR 114.5 0.026469 1111940000.0 1448140.0 1825470.0 1622930.0 1786620.0 1716040.0 2029400.0 1990360.0 1816020.0 2258420.0 1954890.0 True False 1440343.3751434803 1886229.6654300815 1851424.437239558 2012805.9088137245 1934567.5222340396 1889112.3546937457 1894078.6828864322 1951540.6339627088 1701862.6522775579 1830127.2465344686 0.7870181583662647 1.0306549279575223 1.0116369999656678 1.0998174649468644 1.057067220816115 1.0322300584677766 1.034943710320177 1.0663415003837295 0.9299149310520387 1.0 20.80351253016252 4.73934743157348 6.072355466888682 1.035881492097731 0.7804997538750122 0.7381953379311204 0.043108881136325994 0.060708250072157806 11.173127233246593 0.009885106694167428 0.06386861143205205 54871.575691914004 -4.73934743157348 -0.2553817382227188 S(ph)FPLFDNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFPLFDNSK 9 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 S(1)FPLFDNSK;S(1)FPLFDNSK 144.1 0.00010527 53285000.0 278838.0 185461.0 185473.0 193923.0 129413.0 222130.0 218325.0 225406.0 404290.0 240304.0 True False 277336.76718981395 191633.9572714578 211585.98623978387 218473.6319166268 145892.9784590536 206774.6759377758 207763.78566750753 242226.9403084758 304658.14670844836 224967.59298539467 1.2327854137098724 0.8518291667186884 0.9405176249252951 0.9711337931717593 0.6485066427702111 0.9191309432341218 0.9235276197358611 1.0767192602900884 1.354231259113962 1.0 17.779357667849965 1.5889444192118904 3.6462789870006365 1.1873105457654487 0.9152823208472746 0.2956008896584381 0.15637522476943733 0.20300207450945928 6.2434315227163095 0.09380234469293781 0.0397273773475512 38.81006938817251 -1.5889444192118904 -0.27202822491817413 S(ph)FQGDDSDLLLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFQGDDSDLLLK 12 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 S(1)FQGDDSDLLLK;S(1)FQGDDSDLLLK;S(0.999)FQGDDS(0.001)DLLLK;S(0.997)FQGDDS(0.003)DLLLK 155.26 7.5718e-05 342978000.0 617400.0 547630.0 521133.0 542340.0 520800.0 663710.0 632770.0 557790.0 815630.0 616710.0 True False 614075.9869995882 565857.5335006738 594503.9966307622 611000.1883926264 587120.7929765558 617829.2899052857 602160.49768386 599415.1222002292 614628.9153820579 577351.039808006 1.0636093895384597 0.9800926896898735 1.0297097530619506 1.0582819571881434 1.0169216862791113 1.0701102921902426 1.0429711841934228 1.0382160607168223 1.0645670883115554 1.0 19.139089244599788 3.9981682751076604 24.999541256038132 1.0431509093254987 1.0176135885370743 0.07428596508595608 0.027408391717585218 133.5963994261205 1823453.6736024653 0.006200371072027061 0.013101341968817614 9957.911795837132 -3.9981682751076604 -0.02553732078842441 S(ph)FS(ph)PEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSPEER 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 S(1)FS(1)PEER 66.758 0.09796 438720000.0 663050.0 940840.0 757580.0 904760.0 902310.0 793330.0 731170.0 790800.0 733990.0 847300.0 True False 659480.2124717796 972155.2906502087 864240.6789965952 1019302.523232867 1017213.8300896228 738488.9643979458 695800.513759356 849813.5116010343 553107.9994621038 793224.588589974 0.8313915402497334 1.2255738218835346 1.0895283522827481 1.2850112539309533 1.2823780865111725 0.9309960571326646 0.8771797089601095 1.07134035407507 0.6972905371545549 1.0 19.59736987374714 2.712668295513943 22.785634770648727 0.9291410256147813 1.1523201191959256 0.35882151846091415 0.15117069841310926 282.59337857451175 248685.41470799255 0.04793023555625225 0.045213012761542194 516.0220925002379 -2.712668295513943 0.2231790935811443 S(ph)FS(ph)RS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSRSR 6 1 P84103;S4R363;Q8IZD2-6;Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-8;Q8IZD2-2;Q8IZD2-4 P84103;Q8IZD2-6 SRSF3;KMT2E Serine/arginine-rich splicing factor 3;Histone-lysine N-methyltransferase 2E 3 S(1)FS(1)RS(1)R 64.374 0.087353 2045200000.0 2436200.0 2777500.0 1598400.0 2102100.0 2319400.0 2775200.0 2554900.0 2532100.0 3255400.0 2424800.0 True False 2423083.7698872634 2869947.408465796 1823440.826458141 2368225.644466833 2614761.8418391403 2583356.956118105 2431309.726334201 2721058.1597432746 2453150.290125117 2270047.1880242787 1.0674155950018727 1.264267731352156 0.8032611991846571 1.0432495222832805 1.1518535190076298 1.138019055175022 1.07103928903358 1.1986791173762033 1.0806604827718145 1.0 21.114290856805578 3.2543665250772555 23.193383004726414 1.12100136299046 1.0430078550132262 0.05696392501112446 0.11535614853193386 260.7261099499993 382580.1454639014 0.0317806524478177 0.042846648287064894 1796.2489409106322 -3.2543665250772555 -0.07799350797723381 S(ph)FSEDVFQSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSEDVFQSVK 11 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 S(0.999)FS(0.001)EDVFQSVK 182.89 5.862000000000002e-06 76897000.0 101750.0 85721.0 76623.0 70743.0 61134.0 91821.0 85526.0 91353.0 144240.0 98399.0 True False 101202.18930548777 88574.1716655613 87410.85238094485 79699.05654655685 68919.05253039321 85473.63039338459 81388.78063895217 98170.22474113475 108693.98471697698 92119.09157637783 1.0986016858576917 0.9615180756762308 0.9488896480103771 0.865174147754993 0.7481516735675906 0.927860109459684 0.8835169696769215 1.065688154987284 1.179928968653111 1.0 16.49121256375102 1.644151496952331 4.737772319181477 1.0992660822398785 0.9137956061919739 0.3935538590504769 0.0923397269976909 0.15295425748415356 7.696983409462345 0.05320899604260021 0.025026146189947272 44.07085711044548 -1.644151496952331 -0.18547047604790468 S(ph)FSIS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSISPVR 8 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2;H7C2G8 P18583-7 SON Protein SON 2 S(0.998)FS(0.443)IS(0.559)PVR 84.507 0.025442 51502000.0 171470.0 202310.0 190350.0 179220.0 191240.0 218680.0 190460.0 176700.0 244910.0 184950.0 True False 170546.82457210805 209043.7660510222 217149.6254481402 201909.23362415942 215593.28043171382 203563.16631734924 181246.72217214465 189886.2512644195 184555.21212586566 173146.3326563385 0.9849866408121392 1.2073242490554683 1.2541393289521159 1.1661190308021692 1.2451507180323835 1.1756712556042535 1.0467834888070304 1.0966807575492024 1.0658915455759121 1.0 17.40163230514524 2.245700115310037 23.116104407619464 1.0637972059637364 1.1805867373200725 0.38222953367598755 0.07364205835076927 68.84885487770083 222917.93488788046 0.02562737194363188 0.02097742217912848 176.07598042643687 -2.245700115310037 0.11678953135633607 S(ph)FSKEVEER ddPTM_BT-474_Trastuzumab_2h_R1 6 SFSKEVEER 9 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 S(0.998)FS(0.002)KEVEER;S(1)FSKEVEER;S(0.999)FS(0.001)KEVEER;S(0.996)FS(0.004)KEVEER;S(0.994)FS(0.006)KEVEER;S(0.5)FS(0.5)KEVEER 160.52 3.9503e-05 2892300000.0 3580870.0 3738710.0 3067250.0 3662820.0 3571320.0 3776780.0 3866150.0 3591480.0 5883270.0 3823350.0 True False 3561590.9937920617 3863150.7022520746 3499092.13898507 4126532.6364426035 4026106.433127944 3515700.0881838207 3679129.5543727665 3859494.474765909 4433416.940279047 3579340.5296653807 0.9950411156116017 1.0792911907192095 0.9775801184561188 1.1528751182633015 1.124817937762499 0.9822200651337554 1.02787916485742 1.0782697099587557 1.2386127845437245 1.0 21.771262374070137 3.7534542400887347 24.85030884156148 1.0830213641344957 1.0235028548768574 0.14708027789732447 0.07548721198343486 1698.5817239779642 2834109.1419093716 0.019524614962557026 0.03504567647220495 5668.318435218156 -3.7534542400887347 -0.05951850925763824 S(ph)FSLDEPPLFIPDNIATIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSLDEPPLFIPDNIATIR 19 0 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 S(0.5)FS(0.5)LDEPPLFIPDNIATIR;S(0.5)FS(0.5)LDEPPLFIPDNIATIR 138.39 2.1105e-06 54852000.0 95143.0 64414.0 57269.0 72959.0 64138.0 64952.0 53647.0 52632.0 85822.0 69698.0 True False 94630.76065938093 66557.98105091469 65331.97740892849 82195.6019193453 72305.59412429026 60462.021120561876 51051.889658558386 56559.66709988065 64672.31805588186 65249.81396854014 1.4502839916908676 1.0200485948205964 1.0012592134044698 1.2597063029018822 1.108134870072611 0.9266236551986696 0.7824066698975233 0.8668172927994953 0.9911494626952236 1.0 15.99368616802052 2.7566854032148034 3.5947264411518507 0.8879775141209032 1.1601335750765625 0.480869148417856 0.13213564550677206 0.20284683921434848 5.692534626523986 0.042713144185405554 0.04329921302669877 571.0648155248474 -2.7566854032148034 0.27215606095565925 S(ph)FTLDDESLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFTLDDESLK 10 0 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 S(0.999)FT(0.001)LDDESLK;S(1)FTLDDESLK;S(1)FTLDDESLK;S(0.999)FT(0.001)LDDESLK 288.11 5.304399999999999e-25 419900000.0 1053020.0 792540.0 670490.0 629540.0 617351.0 924460.0 764090.0 805870.0 1324340.0 860710.0 True False 1047350.657321521 818919.2147994528 764889.1639964458 709239.6994518103 695966.9905239441 860554.2561447625 727128.0475927432 866008.1115249438 997974.1522468207 805778.7509090956 1.2997993011603732 1.0163077816032402 0.9492545728383661 0.8801916142013325 0.863719711817593 1.0679783441470354 0.9023916885030573 1.07474677204865 1.2385213076429311 1.0 19.620024235294036 -0.19711460012544219 7.57186004941738 0.9999984949051436 1.0193511047093016 0.0 0.13939470650585373 0.0 0.0 0.13454426436345984 0.031712387233719344 0.6351633050407391 0.19711460012544219 0.019352609804157983 S(ph)GAQASSTPLSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 S(1)GAQASSTPLSPTR 124.5 0.00010145 333390000.0 219870.0 147140.0 162910.0 139920.0 148090.0 211610.0 216690.0 215790.0 294930.0 239430.0 True False 218686.24434985366 152037.4659519917 185846.31196089598 157633.85765367936 166948.38370180124 196981.8987763594 206207.87686381364 231893.34555941744 222248.45335952594 224149.37241366372 0.9756272881561856 0.6782863780292422 0.8291181454566818 0.7032536203704771 0.7448086153625313 0.8787974583878503 0.9199574134129657 1.0345482704785913 0.9915194094292191 1.0 17.774100934490313 2.2560705300288606 1.8606652091364526 1.008923688471534 0.7794762456793836 0.5924787941191039 0.07923641297161187 0.21571984471120226 1.5048524519392488 0.03717320013486411 0.024181840636801614 180.33105772302753 -2.2560705300288606 -0.22944744279215046 S(ph)GDEEFKGEDELCDSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 SGDEEFKGEDELCDSGR 17 1 O43823;M0QYL4 O43823 AKAP8 A-kinase anchor protein 8 1 S(1)GDEEFKGEDELCDSGR;S(1)GDEEFKGEDELCDSGR;S(1)GDEEFKGEDELCDSGR;S(0.999)GDEEFKGEDELCDS(0.001)GR;S(1)GDEEFKGEDELCDSGR 236.59 2.0721e-20 4760430000.0 3883240.0 2419570.0 1965360.0 1638890.0 1825220.0 3069340.0 2544610.0 2847040.0 4376000.0 2626620.0 True False 3862333.067308528 2500103.9247890483 2242065.604784645 1846373.3059608235 2057650.9480734826 2857163.7502491944 2421517.4929458206 3059500.581776188 3297593.435395805 2458986.8628374836 1.5707009767639384 1.0167211393330173 0.9117842956661721 0.7508674950098144 0.8367881012992116 1.161927212149578 0.9847622732524783 1.2442118451359914 1.3410374350640626 1.0 21.229632596665716 1.7302343451258118 7.311251168616997 1.2173149636605125 1.0145592070044365 0.09083760350194314 0.2251999723042346 0.25257293690880905 38.951787151084 0.1128260223099124 0.059413672797586685 53.732165670639525 -1.7302343451258118 -0.20275575665607604 S(ph)GDEMIFDPTMSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK 180.28 1.367e-05 116546000.0 229333.0 289163.0 205204.0 206359.0 226000.0 237455.0 201723.0 267531.0 530390.0 241504.0 True False 228098.29660929184 298787.61565227504 234094.9395348576 232484.02824153486 254779.76039305198 221040.2947589455 191964.887833306 287495.5217148918 399682.4913618794 226091.0079580234 1.0088782330150923 1.3215369259964052 1.0354013706653926 1.0282763137784692 1.1268902849968938 0.9776607073200557 0.8490602504144998 1.271592020892175 1.7677947255473574 1.0 17.78654408911653 1.5185045302306281 6.439151178628681 1.426772115968064 1.059241450929659 0.30555278900872995 0.20678960437314717 0.12986098709070706 11.436122746845832 0.10846045304049183 0.04926569124356866 32.99928501279985 -1.5185045302306281 -0.3675306650384049 S(ph)GDET(ph)PGSEVPGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 2 S(1)GDET(1)PGSEVPGDK;S(1)GDET(1)PGSEVPGDK 279.19 1.7467999999999997e-32 524760000.0 1860950.0 1258910.0 1067760.0 1159990.0 1220240.0 1788710.0 1529670.0 1616730.0 1959200.0 1477980.0 True False 1850930.851970981 1300812.0583228334 1218091.3268637052 1306844.6150635455 1375630.3310708778 1665060.6878704315 1455674.018193133 1737378.6021885956 1476381.41193498 1383654.051037662 1.3377121619257994 0.9401281030813289 0.8803438445832655 0.9444879766611359 0.9942010649549526 1.2033793321543997 1.0520505592430853 1.2556452249647665 1.0670162898217064 1.0 20.40005184666231 2.7557186023928026 23.78028743540855 1.1361923946238217 1.0030877234504707 0.0969108069805441 0.1355407735324428 748.2458162835435 1037037.1199250378 0.04096015737729625 0.04332979466766886 569.7949585984237 -2.7557186023928026 -0.133104671173351 S(ph)GDETPGSEVPGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(1)GDETPGSEVPGDK;S(0.987)GDET(0.013)PGSEVPGDK;S(0.863)GDET(0.137)PGSEVPGDK;S(0.996)GDET(0.004)PGSEVPGDK 249.41 4.3815e-18 3291940000.0 4235970.0 3282720.0 2699200.0 2445490.0 2682980.0 3841260.0 3416890.0 3604480.0 4940770.0 3389180.0 True False 4213164.008180509 3391983.350753859 3079223.8981330204 2755088.7832582644 3024641.5997316455 3575722.7375534144 3251601.9769126233 3873464.60077857 3723183.436426085 3172879.6307770214 1.3278675835391611 1.0690551629666394 0.9704824186409287 0.8683243941981996 0.9532796549836109 1.1269645097370866 1.0248110093342315 1.2208041437203778 1.173439862108572 1.0 21.597361360237773 1.7565504454217054 24.999999999318362 1.1526351879272787 1.0388637535113268 0.07087933276371028 0.12722249078542822 14.915858498857569 20749.614750535875 0.060855196317269954 0.033747453435276194 57.08873836740999 -1.7565504454217054 -0.11377143441595194 S(ph)GDLGDMEPLK ddPTM_BT-474_Trastuzumab_2h_R1 11 SGDLGDMEPLK 11 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;H0YC95 O60716-13 CTNND1 Catenin delta-1 1 S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK;S(1)GDLGDMEPLK 228.78 3.1623e-12 11638270000.0 12563530.0 10701860.0 10018840.0 8316160.0 10061560.0 12986480.0 11621050.0 11740290.0 16579410.0 10297390.0 True False 12495889.350419406 11058064.940689012 11429405.586681604 9368985.00332491 11342840.026461594 12088755.204485688 11058895.414777897 12616410.055784645 12493636.55821199 9640201.754160881 1.2962269534479358 1.1470781652382074 1.185598172958203 0.9718660710893411 1.1766185309934851 1.2539940047694509 1.1471643121996573 1.3087288396572385 1.2959932662010436 1.0 23.200631909418576 2.9949095318366257 24.957824038692433 1.222041127346985 1.1427168334261881 0.02662819655265336 0.11114253677050709 528.7651432599819 2592477.1870939163 0.03181481892802379 0.03705735708647466 988.347189971604 -2.9949095318366257 -0.07932429392079676 S(ph)GDLGDMEPLKGTTPLMQK ddPTM_BT-474_Trastuzumab_2h_R1 5 SGDLGDMEPLKGTTPLMQK 19 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-27;O60716-29;O60716-32;O60716-31 O60716-13 CTNND1 Catenin delta-1 1 S(1)GDLGDMEPLKGTTPLMQK;S(1)GDLGDMEPLKGTTPLMQK;S(1)GDLGDMEPLKGTTPLMQK;S(1)GDLGDMEPLKGTTPLMQK;S(1)GDLGDMEPLKGTTPLMQK 255.2 3.8411e-31 1792300000.0 2786200.0 2729360.0 2518760.0 2323380.0 2097760.0 3840750.0 3575740.0 3115630.0 5348120.0 3253850.0 True False 2771199.4087759242 2820205.0976670417 2873379.514545611 2617519.6697784844 2364897.301602342 3575247.9926530053 3402767.7955466965 3348134.1314485734 4030147.487136431 3046186.507238861 0.9097274254844652 0.925814979143659 0.9432710399436813 0.8592775470439166 0.7763468507205566 1.1736799385582266 1.1170582587311928 1.0991231572630806 1.3230140300205901 1.0 21.53857284497447 2.7273041611898647 24.92426209867922 1.1423345363115263 0.8873153934764808 0.6931005384070692 0.08637624424287153 401.1620895504847 888259.4236665502 0.027310700985685946 0.025959804805243666 533.7085511574795 -2.7273041611898647 -0.25501914283504545 S(ph)GEGEVSGLMR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGEGEVSGLMR 11 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 S(1)GEGEVSGLMR;S(1)GEGEVSGLMR;S(1)GEGEVSGLMR 277.63 3.306000000000001e-27 11068100000.0 1126010.0 1013170.0 897850.0 904950.0 928400.0 1094730.0 920600.0 870530.0 1368140.0 948920.0 True False 1119947.6872714707 1046892.7509758028 1024259.4757478989 1019516.577213385 1046626.2369420773 1019053.8918172291 876067.0609664812 935493.3690617702 1030980.2291367499 888359.1131887154 1.2606925179744946 1.178456702287929 1.1529790830550235 1.1476401402062362 1.1781566951964626 1.147119308721213 0.986163194546277 1.0530576600985935 1.1605444395522706 1.0 19.760783468675484 2.4003907362287302 6.324457337421075 1.052212212840711 1.1780284659508293 0.5943576085078102 0.05220962024367085 0.15321237805078905 9.965161395204234 0.018341058605783816 0.015303263095625758 251.41474012601142 -2.4003907362287302 0.12581625311011835 S(ph)GGGDLTLGLEPS(ph)EEEAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGGGDLTLGLEPSEEEAPR 19 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 2 S(1)GGGDLTLGLEPS(1)EEEAPR 225.74 2.4329e-19 316810000.0 192350.0 218240.0 195600.0 210520.0 190660.0 256630.0 219650.0 180800.0 224410.0 193390.0 True False 191314.40897209413 225503.9864711341 223138.77981432184 237171.81041489803 214939.42086964293 238889.7721420402 209024.6903555156 194292.21408379727 169107.16243993884 181047.68463049125 1.0567072943382663 1.2455502368416134 1.2324862384721256 1.3099963741538765 1.187197844083579 1.3194853755219327 1.154528381747184 1.073154923137169 0.9340476393557732 1.0 17.46601020113509 1.6458789307145567 2.1710387083131404 0.9707204810387757 1.2280288613444552 0.664740540027842 0.07217729442023911 0.15587650150137297 1.5966725031750901 0.05047473704406184 0.019513978642745056 44.24650081660609 -1.6458789307145567 0.2573083803056795 S(ph)GGGDLTLGLEPSEEEAPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SGGGDLTLGLEPSEEEAPR 19 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 S(1)GGGDLTLGLEPSEEEAPR;S(0.983)GGGDLT(0.017)LGLEPSEEEAPR;S(0.997)GGGDLT(0.003)LGLEPSEEEAPR;S(1)GGGDLTLGLEPSEEEAPR;S(0.999)GGGDLT(0.001)LGLEPSEEEAPR 209.7 4.3349e-25 946580000.0 231910.0 262657.0 275371.0 277981.0 263694.0 349276.0 295234.0 249936.0 342962.0 315074.0 True False 230661.42232762335 271399.37946549046 314140.8432323606 313173.36609796627 297273.8678632103 325131.3722272663 280952.4035165959 268587.49346929224 258443.6105553514 294965.70757157734 0.7819940298370118 0.9201048545605316 1.0650080167577791 1.061728051970145 1.0078251818173571 1.1022683785991254 0.9524917517688698 0.9105719294644308 0.8761818880001047 1.0 18.17018771232761 -0.7933345138928528 6.483302250391603 1.000000000460515 0.9693506717599383 0.010443905290399846 0.09315501088119936 7.059816314248859e-10 1.0889229617942502e-10 0.0947552484616367 0.02233402574754211 0.16094055183472022 0.7933345138928528 -0.030649328700576683 S(ph)GGGDLTLGLEPSEEEAPRS(ph)PLAPSEGAGSDVFDGDLGMGAAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGGDLTLGLEPSEEEAPRSPLAPSEGAGSDVFDGDLGMGAAK 43 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 2 S(0.497)GGGDLT(0.497)LGLEPS(0.205)EEEAPRS(0.791)PLAPS(0.005)EGAGS(0.005)DVFDGDLGMGAAK;S(0.973)GGGDLT(0.027)LGLEPS(0.001)EEEAPRS(0.989)PLAPS(0.01)EGAGSDVFDGDLGMGAAK;S(0.454)GGGDLT(0.454)LGLEPS(0.147)EEEAPRS(0.908)PLAPS(0.018)EGAGS(0.018)DVFDGDLGMGAAK;S(0.972)GGGDLT(0.028)LGLEPSEEEAPRS(0.954)PLAPS(0.046)EGAGSDVFDGDLGMGAAK 176.12 4.5806e-21 623570000.0 191711.0 216712.0 228523.0 203876.0 196739.0 287526.0 249314.0 214050.0 264511.0 269619.0 True False 190678.84927709453 223925.12791482985 260697.05204247596 229686.68069612264 221792.54548658733 267650.0043834012 237253.729348031 230023.4979238763 199325.808315809 252411.68458756083 0.7554279810329012 0.8871424802727423 1.0328248173948578 0.9099684948081119 0.8786936541745086 1.060370896936644 0.9399474898941471 0.9113028911467919 0.7896853453575502 1.0 17.945419171232494 4.664797805188414 3.652188673550898 0.9378086336935886 0.7475584808167212 0.35795053610448846 0.07436780750777115 0.25466452926573285 5.740136941618979 0.01776582627466298 0.11293717608165302 46216.58004203469 -4.664797805188414 -0.19025015287686742 S(ph)GKDSEAWVPDSEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SGKDSEAWVPDSEER 15 1 Q96F63;M0QXS4 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 S(0.996)GKDS(0.004)EAWVPDSEER 129.46 3.9806e-05 430860000.0 185360.0 203340.0 181790.0 169690.0 200570.0 193310.0 207150.0 201600.0 296140.0 212550.0 True False 184362.04235543212 210108.04897837443 207384.45185299413 191172.7366012925 226111.4006284711 179946.93470279317 197129.36311015312 216644.4157040573 223160.26507269513 198984.87702679 0.9265128340914613 1.0558995845201185 1.0422121266284636 0.9607400293820032 1.1363245489154885 0.9043246772897536 0.9906751008199127 1.0887481447893637 1.1214935949260623 1.0 17.602299263660424 1.7248320090112157 7.69068597154833 1.0779797299735407 1.00577690542684 0.16303765584097263 0.06916739282924671 0.19479165209510038 32.24811652326563 0.032278787852204 0.017046547316030603 53.067913064791426 -1.7248320090112157 -0.0722028245467008 S(ph)GLSRSSNLRVT(ph)RT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SGLSRSSNLRVTRTR 15 3 Q9NSI6-3;Q9NSI6-2;Q9NSI6 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 3 S(0.938)GLS(0.021)RS(0.021)S(0.021)NLRVT(0.999)RT(0.999)R 48.44 0.06449099999999999 18252000.0 3687.5 3878.0 2628.1 2913.6 3881.4 3433.2 3121.0 2563.3 3078.2 2542.4 True False 3667.6469097197632 4007.0768856994964 2998.1136361452945 3282.4614612618616 4375.673283139792 3195.8709648834993 2970.0253066221944 2754.586462173661 2319.618855766767 2380.14185534185 1.5409362687725159 1.6835454057943016 1.259636533602611 1.3791032891148478 1.8384086113688096 1.3427228959949908 1.2478354178581605 1.15732028996147 0.9745716838518474 1.0 11.216831844707679 1.9503014542220356 1.3345452554487893 1.0053978507319732 1.5235338436546069 0.6553568907306186 0.15595901664948458 0.28126330166172947 0.929100918116043 0.11716181959492339 0.05287261393180212 89.18697915536941 -1.9503014542220356 0.5181359929226337 S(ph)GNLHLIHVTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGNLHLIHVTSK 12 0 E7ES84;P50748 E7ES84 KNTC1 Kinetochore-associated protein 1 1 S(0.999)GNLHLIHVT(0.001)SK;S(0.992)GNLHLIHVT(0.008)SK 52.344 0.06768500000000001 319180000.0 189236.0 213701.0 188186.0 181728.0 180678.0 242557.0 230506.0 169253.0 299780.0 215521.0 True False 188217.17440209625 220813.90860001728 214680.95305796532 204734.74616700815 203686.2723375925 225789.60550776165 219355.54416156825 181883.5183093197 225903.2358461965 201766.2652631885 0.9328475905354222 1.0944044997412357 1.064008162008305 1.0147124738615123 1.0095159965016922 1.1190651976099004 1.0871765102825088 0.90145653472877 1.119628375692652 1.0 17.622325454599963 S(ph)GNSDSIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SGNSDSIER 9 0 C9J8U3;A0A0A0MRW7;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-10;Q7Z2E3-8;Q7Z2E3-7;Q7Z2E3;A0A5F9ZI51;A0A5F9ZGW5;Q7Z2E3-13;Q7Z2E3-9;Q7Z2E3-11 C9J8U3 APTX Aprataxin 1 S(0.969)GNS(0.031)DSIER 167.18 6.3129e-05 186640000.0 186200.0 176820.0 173810.0 165830.0 179490.0 175610.0 197730.0 174880.0 219740.0 198340.0 True False 185197.51988876497 182705.3468100528 198280.9372163974 186824.06099706684 202346.98757941992 163470.49404147497 188165.04449804733 187930.43362264655 165588.0213651451 185681.77139258265 0.9973920353075809 0.9839702919666957 1.0678535417306885 1.0061518672291696 1.0897514929001964 0.8803798715160526 1.013373812016336 1.0121103014754722 0.8917839383115653 1.0 17.502472665518706 2.7555037965834983 24.953311310453056 0.9690711142463513 1.027407402693758 0.2977359679210201 0.05231952415603767 1231.7336503227525 1814051.755603264 0.015845449118974102 0.01676705916377299 569.5132027658523 -2.7555037965834983 0.05833628844740679 S(ph)GPSPTTPQPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGPSPTTPQPLR 12 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(0.996)GPS(0.004)PTTPQPLR 97.195 0.0053059 216500000.0 56869.0 53253.0 38649.0 45962.0 38627.0 46453.0 43121.0 50105.0 56341.0 65328.0 True False 56562.82362273987 55025.493912881684 44090.44325686981 51780.78448740998 43545.91948983379 43241.813448599896 41035.07249178326 53844.08952803471 42456.515480721 61158.711109885284 0.9248531009934483 0.8997163758735218 0.7209184506464088 0.8466624549097224 0.7120149967123051 0.707042589090969 0.670960387279166 0.8803993503278997 0.694202260156176 1.0 15.900270382471673 4.31723175294228 6.629386095064145 0.7724784313292136 0.9165662623009643 0.22658538371724513 0.09806111318897888 0.27183346907273215 18.306117531740636 0.02228750036130653 0.0619407964219446 20760.210508414373 -4.31723175294228 0.1440878309717507 S(ph)GS(ph)IKGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSIKGSR 8 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 S(1)GS(1)IKGSR 144.1 0.00033616 605660000.0 1146100.0 667000.0 447080.0 569560.0 620330.0 530810.0 849610.0 798400.0 1821600.0 904980.0 True False 1139929.5249436793 689200.6917899863 510024.9779109769 641666.237601698 699325.3485160271 494116.3540923364 808511.1184746175 857980.6621930514 1372691.0881894436 847223.4016076414 1.345488713815761 0.8134816513356449 0.6019958572239429 0.7573754884297458 0.8254320491962668 0.5832184913149592 0.9543068769588213 1.0126970767863561 1.6202232912649788 1.0 19.69238291376354 1.5375760007916277 3.1142760642989664 1.3127819043462345 0.8164584256410877 0.3520071175166196 0.24666223244759894 0.21305548366154925 4.529936258845958 0.16592133772977163 0.06305665456710423 34.48069419188711 -1.5375760007916277 -0.4963234787051468 S(ph)GS(ph)SSPDSEITELKFPSINHD ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSSSPDSEITELKFPSINHD 21 1 P17812;B4E1E0;P17812-2 P17812 CTPS1 CTP synthase 1;CTP synthase 2 S(0.804)GS(0.432)S(0.402)S(0.361)PDS(0.001)EITELKFPSINHD 77.053 0.005891899999999999 26150000.0 29594.0 32267.0 24745.0 31271.0 30560.0 41169.0 39543.0 37163.0 51564.0 40881.0 True False 29434.669192202495 33340.98758918662 28228.880912604283 35229.90539371213 34451.63485668885 38323.08393140187 37630.154021070615 39936.29176989029 38856.74312220049 38271.93958001504 0.7690926959858806 0.8711601229271568 0.7375868906143688 0.9205152856195611 0.9001800074611037 1.0013363407224214 0.9832309110542297 1.0434875318089274 1.0152802170102406 1.0 15.223999396614454 3.150645645501328 1.0558826644019965 1.0207476429008542 0.7956566957022838 0.8186314525427143 0.04258566504878223 0.18699952059693795 0.4501907066872856 0.017027776496361318 0.024756353180616135 1414.6390605254933 -3.150645645501328 -0.22509094719857037 S(ph)GSFDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSFDSR 7 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.765)GS(0.235)FDSR;S(0.781)GS(0.219)FDSR 103.56 0.0087566 432290000.0 992470.0 915450.0 831950.0 887400.0 859410.0 792860.0 984010.0 922660.0 1235140.0 995100.0 True False 987126.651793784 945920.199848789 949081.328560968 999744.7490128274 968850.7693778452 738051.4543916851 936409.6770167596 991513.5743725484 930756.2970280563 931591.8660520288 1.0596127851320822 1.015380484006888 1.0187737389583031 1.0731574474234324 1.0399948783191024 0.7922476368535246 1.0051715897704734 1.0643218457611274 0.9991030739378248 1.0 19.829338517530427 S(ph)GSGPTQDLNTILLTSAQLSSDVAVETPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSGPTQDLNTILLTSAQLSSDVAVETPK 29 0 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 S(0.286)GS(0.286)GPT(0.286)QDLNT(0.143)ILLTSAQLSSDVAVETPK;S(0.312)GS(0.312)GPT(0.312)QDLNT(0.063)ILLTSAQLSSDVAVETPK 136.16 3.2904000000000007e-06 50064000.0 95479.0 81052.0 72487.0 65115.0 73173.0 112247.0 100282.0 84732.0 129205.0 97277.0 True False 94964.9516727141 83749.76682303134 82692.53953170122 73358.55232360853 82491.14781964972 104487.6290910167 95430.97654555811 91055.1321003779 97364.15900829884 91068.69857697026 1.042783669434463 0.9196328500538191 0.908023731796391 0.8055298194648811 0.9058123055303037 1.147349536379999 1.0479009586911017 0.9998510303012523 1.0691286965741333 1.0 16.474667646884825 2.7686174511286166 24.48484788618557 1.048009427111088 0.9099184985190855 0.514722377529196 0.0660330242287262 454.68952198395135 370397.5230262707 0.020907137217359498 0.022172449446982895 586.9720896023825 -2.7686174511286166 -0.13809092859200256 S(ph)GSLDDSFSDFQELPASSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSLDDSFSDFQELPASSK 19 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 S(0.5)GS(0.5)LDDSFSDFQELPASSK;S(0.5)GS(0.5)LDDSFSDFQELPASSK 296.79 1.0532e-49 136717000.0 224429.0 183580.0 160482.0 182207.0 160352.0 229688.0 226426.0 210164.0 318543.0 233073.0 True False 223220.6992004062 189690.34932354648 183076.47066544995 205274.38751789558 180771.87671923317 213810.20918739433 215472.90934868212 225847.50487116812 240042.34590751497 218198.0815961653 1.023018614863611 0.8693492992052051 0.8390379481167143 0.9407708171230005 0.8284760131567084 0.9798904171078281 0.9875105581701361 1.0350572434874112 1.100112082340753 1.0 17.73527889193763 2.250183907928023 1.7285580545517005 1.0458228955761317 0.8980476543582062 0.5226856593607476 0.05882846784283502 0.27156571494081116 1.6223302673409092 0.02969541457906657 0.018741273761372742 177.9032606199272 -2.250183907928023 -0.1477752412179255 S(ph)GSMDPSGAHPSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGSMDPSGAHPSVR 14 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 1 S(0.5)GS(0.5)MDPSGAHPSVR;S(0.615)GS(0.385)MDPSGAHPSVR;S(0.631)GS(0.369)MDPSGAHPSVR 186.7 6.651600000000001e-07 5500660000.0 2772420.0 3261420.0 3334620.0 3870470.0 3742950.0 4025160.0 3541030.0 3391360.0 4160060.0 4310030.0 True False 2757493.598764822 3369974.393129981 3804105.51096337 4360471.105151766 4219592.496297235 3746910.1634074505 3369736.850851771 3644440.504177141 3134868.9549480514 4034960.1953976676 0.6834004464059046 0.8351939622536603 0.9427863787361239 1.0806726445840484 1.045758146786717 0.9286114315777462 0.8351350912198193 0.9032159743072661 0.7769268600279445 1.0 21.944123010810962 4.583232634366865 2.5644295311196603 0.9363588796254859 0.6692715323792325 0.45868597442923154 0.08609006648458788 0.3616350703545044 3.7380746209173643 0.023687780975236387 0.17763162544557282 38302.986231378796 -4.583232634366865 -0.2670873472462534 S(ph)GSPRPTEPTDFLMLFEGSPSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 S(0.491)GS(0.491)PRPT(0.015)EPT(0.003)DFLMLFEGSPSGK 87.339 0.0098637 35111000.0 54976.0 48968.0 40596.0 46338.0 44242.0 63077.0 62438.0 51175.0 83544.0 67512.0 True False 54680.01532440778 50597.870278218936 46311.56393324245 52204.38604885781 49875.95645712129 58716.635457286655 59417.63540367722 54993.93836138461 62955.70063224576 63203.32636006892 0.8651445813610522 0.8005570781190093 0.732739344594077 0.8259752936332777 0.789134992246742 0.9290117916069541 0.9401029791561184 0.8701114566041116 0.99608207760439 1.0 15.94771286828238 2.7343767162709898 23.067598973186833 0.9328532430362834 0.7999958588353071 0.6981417941554398 0.04698022969460991 74.47703624345229 410620.84416225494 0.014909048132233945 0.01454741335129048 542.4712374672794 -2.7343767162709898 -0.13285738420097626 S(ph)GSTESLNPRPQTTISPADLHGMWYPTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSTESLNPRPQTTISPADLHGMWYPTVR 29 1 Q96JB2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 1 S(0.491)GS(0.414)T(0.095)ES(0.001)LNPRPQTTISPADLHGMWYPTVR 168.48 2.0907e-12 395470000.0 138000.0 174910.0 171790.0 182540.0 170380.0 216700.0 183730.0 170870.0 211530.0 177990.0 True False 137257.0233332413 180731.77361467227 195976.53877455206 205649.5452837519 192076.88307862077 201720.03905693055 174842.27798324105 183621.1870602789 159401.26585678142 166630.5258150946 0.8237207598177522 1.0846258374964588 1.1761142672743046 1.2341648943240788 1.1527112582706684 1.2105827432890288 1.0492811993959548 1.1019660783165168 0.956615032432081 1.0 17.346293193315034 1.3180130706561652 3.779594726491593 0.977505461750149 1.1145824155432833 0.1668810805890979 0.10956219121909501 0.3858786947364196 9.111395965104466 0.0900423093149925 0.028689283273886573 20.79759279216918 -1.3180130706561652 0.13707695379313434 S(ph)GSYSGRSPS(ph)PYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSYSGRSPSPYGR 14 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(0.603)GS(0.376)YS(0.02)GRS(0.001)PS(1)PYGR 171.26 3.6391e-05 418940000.0 357630.0 416460.0 334620.0 422510.0 412330.0 456180.0 449530.0 412700.0 467610.0 431280.0 True False 355704.5598164286 430321.6193446134 381731.58743082016 475999.7226790735 464837.7814286161 424645.3503322131 427784.5165286366 443497.76964813675 352373.7811529787 403755.34116261516 0.8809903512165953 1.0657979609768147 0.9454527247407365 1.1789310856134567 1.1512857764063598 1.051739276338599 1.0595141981201521 1.0984319572617494 0.8727408537514747 1.0 18.623121819364982 5.5166797833355385 1.348134999088721 1.061255992672738 1.6268177184731352e-09 0.22786194403036397 0.08750992630648684 12.815132443510095 4.326648972548747 0.023251071522896148 30.9150859333846 328609.24934764934 -5.5166797833355385 -1.0612559910459203 S(ph)GTPDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGTPDPR 7 0 Q2YD98 Q2YD98 UVSSA UV-stimulated scaffold protein A 1 S(0.5)GT(0.5)PDPR 83.265 0.023504 392650000.0 221950.0 238930.0 197270.0 224450.0 214480.0 167710.0 256230.0 212000.0 250760.0 271770.0 True False 220755.04586096335 246882.6406137649 225043.90129842213 252865.3469866233 241792.75667744197 156116.6024468751 243835.17600634584 227820.51651418715 188963.55801184944 254425.40592599713 0.8676611718767299 0.970353725938729 0.8845181969126111 0.9938683051965825 0.9503483183899114 0.613604611845578 0.9583758945726844 0.8954314750330069 0.7427071102593107 1.0 17.9568832141368 S(ph)GTPTQDEMMDKPTSSSVDTMSLLSK ddPTM_BT-474_Trastuzumab_2h_R1 8 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 S(0.526)GT(0.464)PT(0.01)QDEMMDKPTSSSVDTMSLLSK;S(0.546)GT(0.454)PTQDEMMDKPTSSSVDTMSLLSK;S(0.54)GT(0.447)PT(0.014)QDEMMDKPTSSSVDTMSLLSK;S(0.295)GT(0.267)PT(0.295)QDEMMDKPT(0.029)S(0.044)S(0.055)S(0.014)VDT(0.001)MSLLSK;S(0.343)GT(0.311)PT(0.343)QDEMMDKPT(0.002)S(0.001)SSVDTMSLLSK;S(0.543)GT(0.455)PT(0.002)QDEMMDKPTSSSVDTMSLLSK;S(0.736)GT(0.264)PTQDEMMDKPTSSSVDTMSLLSK;S(0.481)GT(0.481)PT(0.037)QDEMMDKPTSSSVDTMSLLSK 312.18 5.302799999999998e-82 5058870000.0 5164644.0 3374781.0 3086314.0 2737035.0 2768492.0 4654702.0 4529749.0 4598410.0 7755100.0 4356464.0 True False 5136838.130549897 3487108.5454868055 3520840.1844778107 3083543.350365476 3121043.046062311 4332933.406729918 4310627.735548408 4941566.704452846 5843959.518015998 4078430.737763518 1.2595133915077288 0.855012324519461 0.8632830642132047 0.7560612276221695 0.7652558659789309 1.062402106430269 1.056932926587401 1.2116343324645118 1.432894143304893 1.0 21.959582720946173 2.1448089757187816 1.7466015635531333 1.2321845458004954 0.893243136875126 0.3764365317123829 0.16826929252200004 0.3505660227664175 2.0763165951323845 0.09379731857135438 0.053460975833867 139.57543039601373 -2.1448089757187816 -0.3389414089253694 S(ph)HDDGNIDLESDSFLKFDSEPSAVALELPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHDDGNIDLESDSFLKFDSEPSAVALELPTR 31 1 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;P18583-8 P18583-7 SON Protein SON 1 S(0.348)HDDGNIDLES(0.324)DS(0.324)FLKFDS(0.002)EPS(0.002)AVALELPTR 66.20100000000001 0.0036158 25469000.0 54472.0 42159.0 38630.0 41073.0 39156.0 53768.0 48867.0 19409.0 81236.0 39769.0 True False 54178.72880440815 43562.23682934632 44068.76822202074 46272.83758869044 44142.28450420512 50051.144716257724 46503.11651993165 20857.39813690501 61216.47630663017 37230.908372046106 1.4552083517007846 1.1700557073180071 1.1836608385066605 1.2428608275223616 1.1856354420121602 1.3443439041588727 1.249045982312034 0.5602172777649783 1.6442380533640975 1.0 15.184213195520208 1.934760728398441 24.999991070467797 0.9906229928147703 1.2550412312729797 0.08162486925702273 0.2603602747248803 328.898373474665 126034.29389892267 0.10193723025843793 0.06578860982344258 86.0519524160206 -1.934760728398441 0.26441823845820944 S(ph)HDRLPYQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHDRLPYQR 9 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 S(1)HDRLPYQR 95.498 0.0048474 318840000.0 90894.0 88459.0 72499.0 68735.0 75524.0 82845.0 67627.0 32676.0 88986.0 50735.0 True False 90404.63680327269 91403.30434040522 82706.22902739537 77436.84395244168 85141.5337341809 77118.12014615333 64355.62364977226 35114.44904536596 67056.59265130965 47497.048863581214 1.9033737667139832 1.9243996527643112 1.7412919540525624 1.6303506387281477 1.792564712361823 1.6236402469477287 1.354939416017434 0.7392974908024291 1.4118054543537313 1.0 15.53555025673741 2.1542685464937703 2.5820213301854142 1.0240574650973249 1.7834836557881613 0.7704131974082923 0.17766976312866606 0.1208710751688927 1.6175079109056134 0.07958683629951015 0.052171907126237226 142.64893923044153 -2.1542685464937703 0.7594261906908364 S(ph)HNNFVAILDLPEGEHQYK ddPTM_BT-474_Trastuzumab_2h_R1 4 SHNNFVAILDLPEGEHQYK 19 0 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK 171.72 1.626e-11 805171000.0 1419430.0 1064970.0 1062790.0 1083930.0 1172180.0 1432150.0 1192380.0 409464.0 1819920.0 945010.0 True False 1411787.9465934997 1100416.8826620413 1212421.59406372 1221155.4268621528 1321450.1749448145 1333148.8414184742 1134700.0240660592 440020.2828960621 1371425.1016785956 884698.6527362342 1.5957839906583569 1.243832438603387 1.3704345432355864 1.3803066423638268 1.4936726430607488 1.50689597785105 1.2825836464841558 0.49736741605194984 1.5501607213224444 1.0 19.75482660055046 1.9834992132583678 24.08725914346963 0.9424897969580573 1.4187710742796822 0.3361227279928237 0.2549185330580412 405.85116399124576 592446.2998684228 0.09760968261645164 0.06491560389302005 96.27182689695162 -1.9834992132583678 0.47628127732162484 S(ph)HS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 2 S(0.495)HS(0.531)GT(0.522)S(0.451)PDNTAPPPPPPRPQPSHSR 85.745 0.02281 489110000.0 39988.0 49214.0 23481.0 26417.0 19480.0 28961.0 24297.0 19475.0 53850.0 21178.0 True False 39772.70905108449 50852.05823950878 26786.920699489237 29761.389491403967 21960.662532994073 26958.994236860948 23121.66128644648 20928.323392046215 40579.38905303115 19826.401908601987 2.0060477556358065 2.564865701499062 1.351073221604941 1.5010988695075091 1.1076474003821188 1.3597522314507493 1.166205617793655 1.055578490162965 2.0467349164058435 1.0 14.275135260867383 4.2262453755290705 24.387801342541106 1.3040339489415682 2.2854565838966394 0.6052545164011756 0.31042333968416613 85.8193307357708 169948.97603710095 0.07332386410819235 0.16031784194761498 16836.250372337643 -4.2262453755290705 0.9814226349550712 S(ph)HSDNDRFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSDNDRFK 9 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.998)HS(0.002)DNDRFK 88.18700000000003 0.0078452 160880000.0 184210.0 149310.0 136620.0 141440.0 157390.0 167720.0 154020.0 75149.0 268020.0 140150.0 True False 183218.2338276549 154279.69309019897 155854.90847767214 159346.28949783024 177432.68357638275 156125.9111704127 146569.46418646257 80756.99997888999 201970.062284 131205.5070115484 1.396421827107672 1.1758629390199271 1.187868649933681 1.21447866882451 1.3523264961795052 1.189934132541181 1.117098417016611 0.6155000793661957 1.5393413499497628 1.0 17.001468749053743 2.1163958155198492 4.103604301130757 0.9798124523160469 1.2490381965387045 0.11604637594232614 0.22289236690549286 0.3216163538148591 9.855282834255394 0.08639386958229266 0.061479621380070945 130.73618735117986 -2.1163958155198492 0.26922574422265766 S(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.455)HS(0.455)DNDRPNCS(0.089)WNTQYSSAYYTSR;S(0.989)HS(0.011)DNDRPNCSWNTQYSSAYYTSR;S(0.976)HS(0.023)DNDRPNCSWNTQYSSAYYTSR;S(0.479)HS(0.479)DNDRPNCS(0.043)WNTQYSSAYYTSR 237.5 1.1647e-37 4587740000.0 319113.6 277301.0 237477.0 271122.0 263368.6 324710.0 255842.0 101334.0 289431.3 226586.0 True False 317395.5278344539 286530.7961530054 270911.69741291256 305446.01740123495 296907.0301020071 302263.5619851221 243465.94504864948 108896.05764362581 218104.83429572074 212125.08748996578 1.4962658664759196 1.3507633611067302 1.2771318122649098 1.4399334893176345 1.3996789989116765 1.424930759306912 1.1477470577833762 0.5133577500529114 1.0281897199266343 1.0 17.69455572923746 1.9787493435944592 5.572457367006383 0.7980762446807562 1.386229510118357 0.7455665521340812 0.14334627884882414 0.07600522390328915 7.4846706282923785 0.05831429435274343 0.03749648396554809 95.22464090412507 -1.9787493435944592 0.5881532654376008 S(ph)HSGTSPDNTAPPPPPPRPQPSHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.342)HS(0.303)GT(0.303)S(0.052)PDNTAPPPPPPRPQPSHSR;S(0.264)HS(0.236)GT(0.236)S(0.264)PDNTAPPPPPPRPQPSHSR 79.762 0.014741999999999996 87169000.0 18342.1 17876.699999999997 17907.8 20094.4 17415.0 21352.0 22266.0 7864.4 22063.2 17599.8 True False 18243.348171598886 18471.71515280665 20429.06258261204 22638.34897967474 19632.697023208 19875.986497201597 21188.908515619918 8451.281462614032 16626.019991733265 16476.565696053145 1.1072300203900478 1.121090128462355 1.2398859664975992 1.3739725496981214 1.1915527413525795 1.206318529228622 1.2860027330025203 0.5129273671781299 1.0090707188887014 1.0 14.008127944303567 1.7585161689811781 24.999999999999996 0.7978403874788456 1.219653398802103 0.5731119348382923 0.14785447433168958 5.342269868567458 6698.797646148486 0.06505177373348242 0.03607513698283104 57.34772169662559 -1.7585161689811781 0.42181301132325744 S(ph)HSLPSSIIF ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSLPSSIIF 10 0 Q86Z20-2;Q86Z20 Q86Z20-2 CCDC125 Coiled-coil domain-containing protein 125 1 S(0.881)HS(0.119)LPSSIIF;S(0.5)HS(0.5)LPSSIIF 87.258 0.013635 95208000.0 178149.0 214350.0 202629.0 214730.0 153159.0 176684.0 204930.0 87657.0 214780.0 162537.0 True False 177189.86557821473 221484.51017268852 231157.401917159 241914.79598323695 172662.8908054844 164470.25094939908 195016.75299137662 94198.41045322694 161850.3469045503 152163.74950507324 1.1644683188639953 1.4555668540837585 1.5191358169670501 1.5898319854110283 1.1347176404832724 1.0808766968765813 1.281624260874793 0.6190594721779401 1.063659034631991 1.0 17.21526517599587 2.5719779313600317 1.1601924974479112 0.8982846216115213 1.4285595431564624 0.5076194729177723 0.19098054846732004 0.35201424526715996 0.9677881016796641 0.10481259546681176 0.08251093572784682 373.23119160017154 -2.5719779313600317 0.530274921544941 S(ph)HTSSNYDSYKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHTSSNYDSYKK 12 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 S(0.276)HT(0.223)S(0.223)S(0.276)NYDS(0.001)YKK 82.55 0.0089738 86222000.0 42352.0 45921.0 53082.0 60729.0 53671.0 68827.0 61621.0 30987.0 95531.0 57726.0 True False 42123.981537749576 47449.452725169285 60555.48420298488 68417.28517331545 60505.68371705976 64069.15149133065 58640.15681492024 33299.407288797745 71988.66509981654 54041.877258284985 0.7794692500488902 0.8780126659625793 1.1205288801047584 1.2660049695595395 1.1196073635244383 1.1855463714763612 1.0850873394841278 0.6161778416698639 1.3320903853091113 1.0 15.721790170130483 -0.232418508286492 6.275205310291826 1.0000000091640497 1.0245930849273892 0.0 0.2118975502114271 14454090.941388154 2303365.654045204 0.2146298886218394 0.052055394160290105 0.5855736039831192 0.232418508286492 0.024593075763339467 S(ph)HWIFEARK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHWIFEARK 9 1 I3L3Y3;A0A087WYU4;A6NH52-2;A6NH52 I3L3Y3 TVP23A Golgi apparatus membrane protein TVP23 homolog;Golgi apparatus membrane protein TVP23 homolog A 1 S(1)HWIFEARK 63.32 0.047064 854580000.0 1264500.0 2218700.0 2087300.0 2276400.0 2337900.0 1719100.0 1780300.0 1685700.0 1175700.0 2022700.0 True False 1257692.0724991576 2292548.0882675257 2381173.696863163 2564592.0065954486 2635617.7071810486 1600262.6633261177 1694180.0875935566 1811495.4938111594 885964.4885728635 1893609.5542794068 0.6641770842658 1.2106762363373957 1.2574787085763799 1.3543404451037306 1.391848547249227 0.8450858624522947 0.8946829000544725 0.9566362240395988 0.4678707321531275 1.0 20.852707459700692 2.713990111099012 23.127666900391315 0.8459133201910035 1.192114334413866 0.3546039348465827 0.2304004143369634 344.53680581951284 324303.66382543615 0.0750911803296841 0.07084109435409645 517.5950461585519 -2.713990111099012 0.34620101422286254 S(ph)IAEELELSILK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIAEELELSILK 12 0 Q9UBT7-3;Q9UBT7-2;Q9UBT7 Q9UBT7-3 CTNNAL1 Alpha-catulin 1 S(1)IAEELELSILK;S(1)IAEELELSILK 136.99 0.00010509 20614000.0 28482.8 22244.3 19638.0 21757.3 22274.0 30633.3 32406.1 27380.9 34321.0 33934.4 True False 28329.45176953656 22984.688078536692 22402.859703444043 24511.771949173763 25110.461871658626 28515.69207403172 30838.493139676222 29424.20179539296 25863.04942783811 31768.677539298496 0.891741613559219 0.7235015700639149 0.7051870407803804 0.7715704224342422 0.7904157118468805 0.8976040012605885 0.9707200780242861 0.9262016575601747 0.8141053210617595 1.0 14.955317414605378 2.7403235500733443 3.0694061288586085 0.9250483134484675 0.7660527369223079 0.562741911734217 0.06439790600998657 0.18807040854006452 3.630437627984809 0.02140117387360233 0.021403523143542033 549.9504352175569 -2.7403235500733443 -0.1589955765261596 S(ph)IAIGS(ph)QPVLTVGT(ph)T(ph)HIS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 SIAIGSQPVLTVGTTHISK 19 0 Q96DZ1;Q96DZ1-3 Q96DZ1 ERLEC1 Endoplasmic reticulum lectin 1 5 S(0.999)IAIGS(0.999)QPVLT(0.036)VGT(0.989)T(0.989)HIS(0.987)K 50.723 0.044088 875200000.0 27525.0 41233.0 61422.0 62278.0 64472.0 56175.0 70640.0 44707.0 33451.0 68982.0 True False 27376.808458314976 42605.415479125164 70069.68371040534 70162.38841449292 72682.127044517 52291.75447172625 67222.8733289944 48043.26335754609 25207.449270435358 64579.50970153847 0.4239240679410544 0.6597358152149332 1.0850141791760317 1.0864496918412103 1.1254673096842278 0.809726718480808 1.0409319246874518 0.74393973536782 0.39033200138766067 1.0 15.978788867360368 -2.00903635914517 8.075850817266065 1.1878237084818952 0.8412279241997609 0.03642448161358425 0.2571158327370366 0.1490717249176119 0.00016680174980077654 0.042681620055602845 0.06033489994996489 0.00979407985914532 2.00903635914517 -0.34659578428213433 S(ph)IDKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIDKDR 6 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 S(1)IDKDR;S(1)IDKDR 137.13 0.0077934 676550000.0 1301440.0 950430.0 820020.0 768650.0 786440.0 723430.0 1073650.0 1062560.0 1614850.0 1100360.0 True False 1294433.1916435782 982064.4880029315 935471.6882583861 865961.0111885404 886588.4724049211 673420.9868710452 1021713.4477587037 1141853.622770354 1216891.8553813812 1030134.082734407 1.256567677294601 0.9533365650771609 0.9081067250733542 0.840629414852402 0.8606534695479099 0.6537216835729811 0.991825690347657 1.1084514549206996 1.1812946254056955 1.0 19.974400700816453 1.9979256219787593 24.988190852838784 1.0940088145918758 0.9011383468234633 0.24143091459362243 0.14569956845646187 110.3062976390576 1328771.808347494 0.05735745061123793 0.04169403958559808 99.52349571017871 -1.9979256219787593 -0.19287046776841255 S(ph)IDQDYER ddPTM_BT-474_Trastuzumab_2h_R1 5 SIDQDYER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER 178.53 0.00026133 5640980000.0 3143570.0 2699680.0 2581730.0 2680080.0 2218270.0 2844130.0 2752860.0 2559810.0 3688260.0 3117740.0 True False 3126645.3684034618 2789537.2168089803 2945215.1432005595 3019377.8532052045 2500753.535783609 2647521.987461873 2619693.6448535654 2750836.0206517996 2779337.7431519534 2918763.163968497 1.0712227038497764 0.955725785238493 1.009062735736358 1.0344716866646717 0.8567853557475553 0.907069823322756 0.897535530526464 0.9424663345797556 0.9522313346496487 1.0 21.476925720887113 3.256449705886863 24.999992279473034 0.9217183586432511 1.0125883937828875 0.5032835673175502 0.04434848726714208 198.9501715307041 278031.0702509728 0.011912563543828445 0.01609643169545534 1804.8857075764274 -3.256449705886863 0.09087003513963632 S(ph)IDRSMENNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIDRSMENNK 10 1 H0Y6U5;Q86XI2;Q86XI2-2 H0Y6U5 NCAPG2 Condensin-2 complex subunit G2 1 S(0.979)IDRS(0.021)MENNK 51.01300000000001 0.096252 50143000.0 8747.8 24787.0 23519.0 29230.0 22460.0 12561.0 13345.0 10939.0 12880.0 13418.0 True False 8700.702816771945 25612.02031094208 26830.27076918734 32930.51500298058 25320.147869150234 11692.68763541351 12699.451367149364 11755.323727116478 9705.896583157679 12561.65175227225 0.6926400276299727 2.0389054573423575 2.1358871666167683 2.621511537845638 2.0156702612433217 0.9308240561038037 1.0109698642817564 0.9358103503378912 0.7726608550027667 1.0 13.61673855859861 2.736758482955657 23.98199814654528 0.9337097110615296 1.9616749067617347 0.5242831330326879 0.46058407884195984 72.54873351402269 965439.0068431533 0.14938947124247912 0.14767757467241477 545.454442127395 -2.736758482955657 1.0279651957002052 S(ph)IEALLEAGQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SIEALLEAGQAR 12 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 S(1)IEALLEAGQAR;S(1)IEALLEAGQAR;S(1)IEALLEAGQAR;S(1)IEALLEAGQAR 201.48 1.5505e-07 302146000.0 147571.0 138175.0 144658.0 130349.0 131527.0 151298.0 141619.0 124772.0 147591.0 145092.0 True False 146776.4941326793 142774.0713464487 165024.58901012386 146851.17003501605 148276.1838283937 140839.1253771829 134768.347932883 134083.1202193782 111219.17566807645 135832.10434048937 1.0805729237968347 1.0511069679709737 1.214915942084339 1.0811226900152062 1.0916136840279735 1.0368618380831565 0.9921685936268804 0.9871239267800269 0.8187988856396139 1.0 17.051464979784015 2.1994689077141136 1.1246408342938599 0.9243841550176944 1.1096518797553974 0.6055354719266969 0.06028587256633251 0.33305463334335716 0.8019260688100173 0.041003982761190105 0.022376994349398605 158.29562346432897 -2.1994689077141136 0.18526772473770292 S(ph)IEEGDGAFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIEEGDGAFGR 11 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 S(1)IEEGDGAFGR 182.41 6.081e-06 526840000.0 206900.0 144850.0 128160.0 161350.0 209190.0 200240.0 96296.0 121050.0 213020.0 164020.0 True False 205786.07338875122 149671.24468632584 146203.8140133106 181776.89345641166 235829.10653372854 186397.8801142586 91637.79459355683 130083.36567944524 160524.07532175828 153552.10317541333 1.3401709851780237 0.9747261130988606 0.9521446531168103 1.1838124629836895 1.5358246592319509 1.213906395676803 0.5967863200732103 0.8471610807625467 1.0454046021003072 1.0 17.228368747219236 2.266920457116199 24.93838110762144 0.8488822350304404 1.1931030514005954 0.4080707128173011 0.1924496457068314 206.99256975628685 182019.33482683997 0.07109534435574823 0.05947194480802209 184.89299485708233 -2.266920457116199 0.344220816370155 S(ph)IEVENDFLPVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SIEVENDFLPVEK 13 0 Q5JPT1;Q5VSN0;Q5JPT2;Q96B97-2;Q96B97 Q5JPT1 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK 263.99 3.4517999999999996e-24 164765000.0 260093.0 218946.0 196620.0 218486.0 208137.0 332647.0 307179.0 285361.0 436531.0 354202.0 True False 258692.68818704897 226233.485254348 224302.38694832288 246146.30519812542 234642.01322534838 309651.8958568105 292319.57823226484 306656.08685379743 328953.7842657149 331596.52511241095 0.7801429405792246 0.682255295581445 0.6764316570334522 0.7423066484628632 0.7076130039233822 0.933821293066442 0.8815519949528082 0.9247867924726934 0.9920302516867443 1.0 18.33906936296722 2.7372096679430675 24.715341449323333 0.9350481189753254 0.7148467840552705 0.8781729634813834 0.0424761500298437 34.37930954284513 628957.7143137928 0.013356964628619886 0.013231803297342158 546.0214047443036 -2.7372096679430675 -0.2202013349200549 S(ph)IHEVDISNLEAALR ddPTM_BT-474_Trastuzumab_2h_R1 7 SIHEVDISNLEAALR 15 0 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR 353.12 1.2437999999999993e-82 1116344000.0 870324.0 477617.0 447018.0 660031.0 367286.0 456141.0 412932.0 460047.0 642833.0 594886.0 True False 865638.2722860868 493514.1931194266 509954.24884989037 743590.8569254966 414057.69502532145 424609.0463104176 392956.90160657367 494378.0432113311 484415.4206708848 556919.8661724722 1.5543318255736414 0.8861493782062183 0.9156689854765621 1.3351846505960596 0.7434780480556463 0.7624239537882109 0.7055896646446421 0.8877004991921539 0.8698117091784016 1.0 19.087110231099953 6.900200701759382 1.301119344899726 0.8792078541042732 199.99984184210282 0.5547114046630341 0.17229418406168492 344.24827216980924 2.541740911986376 0.048840390325713655 202564.33695004138 7946954.047526332 -6.900200701759382 199.12063398799856 S(ph)IPQLDLGWPDTIAYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SIPQLDLGWPDTIAYR 16 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR 259.34 1.0138e-26 777567000.0 253753.0 270214.0 235306.0 262516.0 228777.0 263597.0 241467.0 232635.0 305195.0 251688.0 True False 252386.8220426089 279207.9096421873 268435.0394835835 295750.4986836282 257910.39488248352 245375.1598305942 229786.3187164822 249995.40499659427 229983.78165347857 235625.05635906244 1.0711374500766322 1.18496697234402 1.1392465794237214 1.2551742299976039 1.0945796634185674 1.0413797395836963 0.975220217523544 1.0609882024415658 0.9760582563129989 1.0 17.8461334378958 2.8626012237356617 3.060718968866963 1.0141978749214382 1.1632535163966058 0.6714749659150421 0.04981672455984871 0.15257789868754024 2.726893839130722 0.015488771103171586 0.01661854684389639 728.7880179082659 -2.8626012237356617 0.1490556414751676 S(ph)IQDLTVTGTEPGQVSSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SIQDLTVTGTEPGQVSSR 18 0 O43318;O43318-3;Q9UG54;O43318-2;O43318-4 O43318 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR 339.55 2.782899999999999e-75 4391110000.0 1381390.0 1185940.0 1155290.0 1154470.0 1029500.0 1308110.0 1195960.0 1269590.0 1561880.0 1400910.0 True False 1373952.7497268566 1225413.295984131 1317944.7900393053 1300625.7836295248 1160600.722675432 1217683.4346597213 1138106.8457891303 1364333.2526473913 1176975.6021197448 1311502.724420607 1.0476171525559266 0.9343581779637489 1.0049119727307805 0.9917065053784867 0.884939620074491 0.9284642814582539 0.8677883961635846 1.0402824387956369 0.8974252056088611 1.0 20.32278937388019 7.9999959531790275 0.9219415865928716 0.9475736652588409 53.67754081005776 0.20767215660604776 0.055193997427888726 1803.9954489068548 3.5145905296136064 0.016952638485063537 200380.79304400267 99999068.18937685 -7.9999959531790275 52.72996714479891 S(ph)IQEIQELDKDDESLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIQEIQELDKDDESLR 16 1 P52565;J3KTF8;J3QQX2;J3KRE2;J3KRY1;P52565-2;J3KS60 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 1 S(1)IQEIQELDKDDESLR;S(1)IQEIQELDKDDESLR 141.1 9.912e-07 294190000.0 249586.0 189270.0 157792.0 146227.0 129833.0 187490.0 146619.0 155219.0 235366.0 200490.0 True False 248242.25670761117 195569.7375338688 180007.74204734925 164739.32320700772 146366.46296951824 174529.25760398697 139526.47883102816 166802.22996611145 177363.20304281777 187694.55655187537 1.322586340637969 1.041957428743102 0.9590461511205222 0.8776989926262286 0.7798119756822314 0.929857854219391 0.7433698738751945 0.8886897576063179 0.9449565629453819 1.0 17.518027284704203 4.876470292495465 1.1801303188984775 0.8673095701346313 1.6431936487223706 0.7705578453504777 0.07278952791466291 0.8519207308400291 0.8130607961186123 0.019822617030901546 0.8754953166747464 75243.7258651974 -4.876470292495465 0.7758840785877393 S(ph)IQFVDWCPTGFK ddPTM_BT-474_Trastuzumab_2h_R1 3 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 S(1)IQFVDWCPTGFK;S(1)IQFVDWCPTGFK;S(1)IQFVDWCPTGFK 183.58 1.0736e-05 596395000.0 569301.0 557974.0 631870.0 461750.0 303650.0 499299.0 567139.0 438052.0 1007210.0 503582.0 True False 566235.9466712871 576545.8272875944 720831.8036875044 520207.5026557055 342318.02762544376 464783.6353534215 539704.3198886268 470741.66462298506 758996.5914225347 471442.96562175854 1.2010698811138514 1.2229386571230771 1.528990474461405 1.1034367687926667 0.7261069791845988 0.9858745792090577 1.144792391115312 0.9985124372407411 1.6099436130551623 1.0 18.846723721070607 3.504591043443913 24.384239609488652 1.0593574319110717 1.3095303239121838 0.18754900234757255 0.22395308195976849 846.8908045622684 751761.1042571389 0.05962427062694749 0.09208498222188473 3195.884264670791 -3.504591043443913 0.25017289200111215 S(ph)IS(ph)RPRS(ph)S(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 SISRPRSSR 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 4 S(1)IS(1)RPRS(1)S(1)R;S(1)IS(1)RPRS(1)S(1)R 54.898 0.066821 560140000.0 1006490.0 1079180.0 639890.0 839960.0 860760.0 1142670.0 826370.0 840570.0 1061340.0 771670.0 True False 1001071.1696715526 1115099.853921913 729980.949976414 946298.8498769611 970372.6838757681 1063679.9124558512 786395.3260600393 903297.601727974 799786.9782273733 722421.3599400748 1.385716460203491 1.5435588089676793 1.0104642393698966 1.3098987687122885 1.3432225812872711 1.4723815925709671 1.0885549205317948 1.250374991407927 1.1070920969082587 1.0 19.462481024265614 -3.3968593165125838 0.06006399046017103 1.5160403570985668e-10 1.814231144659848 0.3479718250682262 0.14728085178475098 328.51294014282934 1.960814343387342 56.56933139894475 14.629457621211978 0.00040099659370308006 3.3968593165125838 1.814231144508244 S(ph)ISESFLTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SISESFLTVK 10 0 F5H527;Q76I76;J3KSQ9;K7EP00;Q76I76-3;Q76I76-4 F5H527 SSH2 Protein phosphatase Slingshot homolog 2 1 S(0.333)IS(0.333)ES(0.333)FLTVK 59.757 0.066035 72505000.0 204400.0 230090.0 186140.0 212970.0 202180.0 251090.0 214780.0 207300.0 293880.0 262810.0 True False 203299.53311097473 237748.40655765805 212346.89404211618 239931.980163694 227926.42458525373 233732.73930228315 204390.27086072255 222769.7786480709 221457.2117902468 246037.24079703924 0.8262957772261816 0.9663106519463092 0.863068100399017 0.9751856238772342 0.9263899393721234 0.9499892721325618 0.8307289993929331 0.9054311368734537 0.9000963068551522 1.0 17.90851717637071 S(ph)ISESSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 S(0.996)IS(0.004)ESSR;S(0.99)IS(0.01)ESSR;S(1)ISESSR;S(1)ISESSR 158.87 0.0014732 5579700000.0 2686250.0 2974200.0 2715260.0 2935070.0 2933570.0 2425890.0 3022850.0 2689750.0 3221340.0 2930830.0 True False 2671787.528470435 3073194.449058132 3097545.0065369946 3306649.5610604906 3307142.7508683475 2258193.9342308166 2876623.197091602 2890472.8032737537 2427483.9207445025 2743781.920190197 0.9737608914214395 1.120057839307105 1.1289326545027585 1.2051429950494301 1.2053227432299352 0.8230223829429856 1.048415391880779 1.0534630256158946 0.8847218880195227 1.0 21.387734387874577 2.7597560034078303 24.98555290895604 0.9797304631266134 1.130765823798455 0.4526308621473558 0.08944736476561446 836.4903340934962 986070.8593097514 0.028075264653471606 0.02975283775249501 575.1167327940143 -2.7597560034078303 0.15103536067184165 S(ph)ISKDSLASNIVNLTPQNQPHPTATK ddPTM_BT-474_Trastuzumab_2h_R1 1 SISKDSLASNIVNLTPQNQPHPTATK 26 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 S(0.5)IS(0.5)KDSLASNIVNLTPQNQPHPTATK 235.07 3.9994999999999996e-45 501860000.0 415420.0 257220.0 277200.0 283890.0 295220.0 405590.0 351930.0 359770.0 604600.0 442940.0 True False 413183.4248775007 265781.4122072266 316227.3505344072 319830.44489210245 332814.5170939686 377552.5179561634 334905.80139684345 386617.86427504313 455604.4312249329 414671.1899799869 0.9964121811728516 0.64094496707151 0.762597832151467 0.7712868716718377 0.8025986013400908 0.9104864940686741 0.8076418364463827 0.9323480232463275 1.0987125275014198 1.0 18.661608291353133 1.5381403365309811 2.628902899681472 1.0491752050935252 0.8049882738589854 0.5156298518996908 0.09149785033224914 0.18733957057256187 2.7818052999486476 0.06614730166429508 0.023880389161757436 34.52552860022346 -1.5381403365309811 -0.24418693123453983 S(ph)ISLLEPSLELESTSETSDMPEVFSSHESSHEEPLQPFPQLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SISLLEPSLELESTSETSDMPEVFSSHESSHEEPLQPFPQLAR 43 0 Q8TE77;Q8TE77-3 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 S(0.525)IS(0.472)LLEPS(0.003)LELESTSETSDMPEVFSSHESSHEEPLQPFPQLAR 139.65 2.3229e-13 27864000.0 18319.0 14884.0 15375.0 26075.0 13065.0 14609.0 15478.0 8321.8 17851.0 18385.0 True False 18220.37253943224 15379.40494243201 17539.666358104303 29376.092326470032 14728.750307677994 13599.114215886948 14729.270008298075 8942.814973244167 13451.860241145016 17211.653559809605 1.0586067443268823 0.8935460436145414 1.0190575993849091 1.7067559618481531 0.8557428986411066 0.7901108495259174 0.8557730933355487 0.5195790713639655 0.7815553685414651 1.0 14.071098086337182 3.0187567494935177 24.99998809200537 0.7534756859450333 1.1568126412345134 0.3796554423716456 0.22987932358857022 245.5514959058356 327281.75637719035 0.06862409766242537 0.08201014712177102 1044.135230055736 -3.0187567494935177 0.4033369552894801 S(ph)ISPPSGLPQPHGGALR ddPTM_BT-474_Trastuzumab_2h_R1 1 SISPPSGLPQPHGGALR 17 0 Q9P202-2;Q9P202 Q9P202-2 DFNB31 Whirlin 1 S(0.539)IS(0.444)PPS(0.017)GLPQPHGGALR 79.293 0.0089205 227470000.0 125360.0 130810.0 119230.0 137710.0 109390.0 136440.0 120070.0 120360.0 164530.0 133630.0 True False 124685.07568880543 135163.9317736851 136016.54763426192 155144.0718802754 123320.16809467242 127008.22394521283 114261.75538805728 129341.87437569597 123983.7860890475 125101.61899360105 0.9966703603986378 1.0804331139839105 1.087248500286948 1.2401443972376651 0.9857599692693046 1.0152404498594803 0.9133515321964121 1.0338944884663068 0.9910646008137535 1.0 16.932740934595426 3.1094643255338705 20.56998025840228 0.9903101673471236 1.1004654554345732 0.4295692963995955 0.06278891828986419 2.6990452517700314 494.2880553234914 0.018152289274829668 0.02169618480378445 1286.6615578128055 -3.1094643255338705 0.11015528808744957 S(ph)ISRPRS(ph)S(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SISRPRSSR 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 S(0.989)IS(0.015)RPRS(0.996)S(1)R 68.168 0.038851 445950000.0 520550.0 684570.0 408650.0 599330.0 697930.0 650920.0 665290.0 481150.0 575390.0 571540.0 True False 517747.4166385418 707355.4986186961 466184.36795052537 675205.1165493099 786807.2485447922 605923.4325008637 633107.3810453947 517055.8562301947 433592.8443309861 535063.8278799877 0.967636737265428 1.3220020897719005 0.8712687041425053 1.2619150863264024 1.4704923180141967 1.1324320593706243 1.183237116876078 0.9663442551870053 0.8103572354142373 1.0 19.02935147562039 1.6524845954647807 3.6166438811415516 0.900068129296572 1.1810338732858296 0.32206099495805096 0.16515108543656784 0.2119331318522589 6.53806878590481 0.09705209984740973 0.0434826202591503 44.924638950451566 -1.6524845954647807 0.28096574398925767 S(ph)ISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLR 45 1 O00257;O00257-3 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 S(0.216)IS(0.194)T(0.194)PT(0.198)CLGGS(0.198)PAAERPADLPPAAALPQPEVILLDSDLDEPIDLR 117.65 1.4212e-07 48584000.0 44414.0 52253.0 50515.0 58355.0 46757.0 56875.0 49241.0 48863.0 64660.0 56013.0 True False 44174.87995885929 53992.2095173945 57627.07291574887 65742.73701672703 52711.22679954841 52943.365119349 46859.02471111294 52509.405181286435 48725.409399609875 52438.202384858036 0.8424178928684091 1.0296350191627697 1.098952105428945 1.2537183585017548 1.005206593709803 1.0096334868762937 0.8936047114506708 1.0013578420538871 0.9291967913392801 1.0 15.678330609447368 2.7163668908001672 2.9609283283682997 0.9601157162851967 1.0616929589934376 0.14298057899453842 0.09967386851082875 0.49034853787644483 8.693418834667167 0.035265261978195024 0.03470262764576633 520.4354733490272 -2.7163668908001672 0.10157724270824098 S(ph)ITS(ph)TPLSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 2 S(0.957)IT(0.043)S(0.775)T(0.224)PLS(0.001)GK 168.85 7.035800000000001e-06 182050000.0 697740.0 501330.0 394540.0 398650.0 471770.0 682110.0 546430.0 553490.0 816180.0 584300.0 True False 693983.4453662013 518016.46598961495 450087.80259684427 449119.049125495 531847.1131001335 634957.3412142263 519997.0933346891 594794.2343652716 615043.3752516803 547009.4737556025 1.2686863366396925 0.9469972474755688 0.8228153701007714 0.821044370661405 0.972281356387909 1.1607794228037775 0.950618075706341 1.0873563674895672 1.12437426545646 1.0 19.061206293966286 2.97707276376547 23.590215647260163 1.0623381862235555 0.9463605302777843 0.12107079416957323 0.12860574305045339 724.0666608020799 745005.0694002695 0.03997766423332398 0.04272625750435412 948.5773791586934 -2.97707276376547 -0.11597765594577114 S(ph)ITST(ph)PLSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 2 S(0.803)IT(0.194)S(0.135)T(0.865)PLS(0.003)GK;S(0.976)IT(0.024)S(0.001)T(0.937)PLS(0.062)GK 226.42 1.6122e-08 440190000.0 1515890.0 1111620.0 884010.0 918360.0 1014910.0 1488760.0 1205080.0 1176690.0 1866750.0 1264590.0 True False 1507728.6166712118 1148619.5997115208 1008470.9240473368 1034624.2818384276 1144152.772657137 1385845.52536408 1146785.6765473464 1264500.5829107512 1406714.4756684464 1183882.783530032 1.273545521268208 0.9702139567285829 0.8518334231032041 0.8739245947588204 0.9664409252118435 1.1705935288896148 0.9686648817781844 1.0680960991259099 1.1882210766457706 1.0 20.175094815838886 2.792863090335753 24.919562036978974 1.0727759061753444 0.9724358915309488 0.11409650597736609 0.12410098246489532 644.4710536721958 295748.0739297766 0.03865873675982853 0.04100374988031949 620.6733385039211 -2.792863090335753 -0.10034001464439557 S(ph)KDAS(ph)PINR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDASPINR 9 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 S(1)KDAS(1)PINR 128.73 0.00023283 532600000.0 1427600.0 961210.0 813900.0 774940.0 758240.0 1098400.0 1096100.0 1136000.0 1630500.0 1055100.0 True False 1419913.9602212703 993203.2937862849 928490.0454543793 873047.3245436108 854797.369559415 1022470.193355482 1043077.4554913776 1220774.0884911173 1228685.122580637 987762.6146834434 1.437505266056584 1.005508083644758 0.9399931032538018 0.8838635027945491 0.8653874492236772 1.0351375706633335 1.0560001360505644 1.2358982516081043 1.2439072954531731 1.0 19.91380484036771 1.912533261192232 4.50257851220957 1.1816269565328203 1.0111346755509185 0.10716344712550308 0.1627617968735712 0.40413303418358076 13.796492772436736 0.07702520771572059 0.0449576159981684 81.75856517537352 -1.912533261192232 -0.17049228098190183 S(ph)KDAS(ph)PINRWS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 3 S(1)KDAS(1)PINRWS(0.985)PT(0.015)R;S(0.998)KDAS(0.991)PINRWS(0.885)PT(0.126)R;S(1)KDAS(1)PINRWS(0.98)PT(0.021)R 104.49 0.00069665 1153010000.0 1707770.0 1361810.0 803200.0 1189910.0 1340350.0 1828530.0 1727220.0 1709000.0 2748250.0 1683390.0 True False 1698575.5560710828 1407137.0226184705 916283.5784604477 1340552.4839957787 1511035.6276231315 1702128.0249966278 1643667.7699788467 1836534.2581261592 2070980.612163283 1575954.6089773118 1.0778074104388982 0.8928791569267388 0.5814149552537264 0.8506288673286769 0.9588065665188744 1.0800615800103495 1.04296644117528 1.1653471792045749 1.3141118407637449 1.0 20.587794551868217 2.756916916712586 1.5432592516018433 1.1478786660811133 0.8362125561793461 0.46736113528643086 0.13670923483578307 0.3394048801266906 1.6260710947619832 0.057704641076973866 0.05646771848457541 571.369319642879 -2.756916916712586 -0.31166610990176724 S(ph)KDEYEK ddPTM_BT-474_Trastuzumab_2h_R1 8 SKDEYEK 7 1 Q13247;Q13247-3;A0A590UJP7 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 S(1)KDEYEK;S(1)KDEYEK;S(0.998)KDEY(0.002)EK;S(1)KDEYEK;S(1)KDEYEK;S(1)KDEYEK;S(1)KDEYEK;S(1)KDEYEK 132.32 0.002047 8155611000.0 18611290.0 10412910.0 8313540.0 6079120.0 7066340.0 8013810.0 10030560.0 11693800.0 18945480.0 10533990.0 True False 18511088.88254871 10759497.41461299 9484014.169414926 6848735.968693778 7966196.513521415 7459834.177179605 9545343.492339725 12566450.735913217 14276620.310425615 9861701.739597434 1.8770684179406496 1.0910386157199077 0.9617015825305293 0.6944781082958762 0.8077912640102421 0.7564449193617697 0.9679205216694554 1.2742679780565127 1.447683238390903 1.0 23.233405189501408 4.739552388543022 3.5395658687194915 0.988646795347147 1.9834041536777112 0.6002989897198934 0.21607888831143027 0.22305364508542852 4.946886429271975 0.05943427983933871 0.5929194158656615 54897.477393397516 -4.739552388543022 0.9947573583305642 S(ph)KDEYEKS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDEYEKSR 9 2 Q13247;Q13247-3;A0A590UJP7 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 S(1)KDEYEKS(1)R 109.1 0.0013428 1452700000.0 2918200.0 1534500.0 1058000.0 1034700.0 1393300.0 2030600.0 2019500.0 2079400.0 3802100.0 2049600.0 True False 2902488.735442499 1585574.90487516 1206957.2036991452 1165692.913909818 1570728.4962638908 1890229.4015182431 1921809.069760821 2234575.3869792507 2865123.400529797 1918792.773249158 1.5126639916032283 0.8263398356406415 0.6290190480837402 0.6075137087033687 0.8186024661767524 0.9851138840373328 1.001571976168409 1.1645735892549602 1.4931906355255784 1.0 20.871767480362895 1.9240588125278133 1.702936393730056 1.2546121012025422 0.858351051309031 0.23074391833437236 0.26135526744373483 0.49340336515213146 2.66611375363278 0.17594806684537959 0.08168053974154484 83.95736746018599 -1.9240588125278133 -0.3962610498935112 S(ph)KDRDPNR ddPTM_BT-474_Trastuzumab_2h_R1 5 SKDRDPNR 8 2 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 S(1)KDRDPNR;S(1)KDRDPNR;S(1)KDRDPNR;S(1)KDRDPNR;S(1)KDRDPNR 82.029 0.0168 920534000.0 1913588.0 1454608.0 1216228.0 1184223.0 1228673.0 1070334.0 1502710.0 1532180.0 2441356.0 1812304.0 True False 1903285.4548276123 1503023.7479508964 1387462.3307567148 1334145.5103788814 1385137.2236345706 996344.329875222 1430018.1763903345 1646519.0518523932 1839716.526294373 1696641.207128485 1.1217960797078992 0.8858819069322968 0.8177700299434278 0.7863451063038149 0.8163996122544226 0.5872451557165144 0.8428524371458583 0.9704580113547271 1.0843285655003267 1.0 20.694250076205524 1.6264760692291311 3.413389656002288 1.0378546834828561 0.8255099788909609 0.31618555979631957 0.12413006405258799 0.23259826375240844 6.40304826353653 0.07998773869631073 0.034463309017816024 42.31321933748821 -1.6264760692291311 -0.21234470459189525 S(ph)KDVEFQDGWPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKDVEFQDGWPR 12 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 S(1)KDVEFQDGWPR;S(1)KDVEFQDGWPR;S(1)KDVEFQDGWPR 146.2 3.9085e-05 536610000.0 912200.0 591120.0 507340.0 489990.0 501640.0 669350.0 595840.0 572310.0 952160.0 720330.0 True False 907288.8165549474 610795.071860414 578769.0621216672 552022.6837601935 565520.8805467726 623079.4099804173 567016.9428701587 615018.6783312955 717512.9262903277 674357.9226944604 1.3454113698698604 0.9057431540507821 0.8582520389308116 0.8185900471881981 0.8386064158439496 0.9239595013443975 0.8408249147642387 0.9120063064936357 1.0639942115952867 1.0 19.363154994978572 4.738247350795327 6.44498582755417 0.8955087967489267 1.3546516512113889 0.761339092226821 0.07343128304694632 0.05342072608843903 13.190757210224596 0.017281086464750756 0.10741938724180314 54732.76025247174 -4.738247350795327 0.45914285446246217 S(ph)KEYHR ddPTM_BT-474_Trastuzumab_2h_R1 7 SKEYHR 6 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(0.803)KEY(0.197)HR;S(0.993)KEY(0.007)HR;S(0.993)KEY(0.007)HR;S(0.986)KEY(0.014)HR;S(0.962)KEY(0.038)HR;S(0.996)KEY(0.004)HR;S(0.999)KEY(0.001)HR 72.643 0.051511 2832877000.0 5647582.0 4171621.0 3411917.0 3514258.0 3578703.0 2818700.0 4254936.0 4432489.0 6890000.0 5124793.0 True False 5617176.046017347 4310470.883186848 3892285.256685803 3959162.7024750113 4034429.61441548 2623849.903506096 4049108.49024601 4763263.836903081 5192051.821269912 4797724.32318397 1.1708000851306843 0.8984407174787901 0.8112773878809945 0.825216797752053 0.8409048420977353 0.5468946789682989 0.843964391759561 0.9928173267241793 1.0821905285763167 1.0 22.193918832207384 -0.3335612898760316 7.161943913862693 1.0000025941560315 0.8807845721573639 0.037137520236470545 0.16120919333252073 0.0 0.0 0.16150659435033088 0.038067469357154646 0.46391531524144297 0.3335612898760316 -0.1192180219986676 S(ph)KGHYEVTGSDDETGKLQGSGVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKGHYEVTGSDDETGKLQGSGVSLASK 27 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 S(0.252)KGHY(0.231)EVT(0.252)GS(0.252)DDET(0.012)GKLQGSGVSLASK 52.707 0.045349 267320000.0 131320.0 119310.0 119920.0 120190.0 131260.0 197970.0 181600.0 167560.0 282770.0 192710.0 True False 130612.9877110236 123281.16122558185 136803.69363667446 135406.0416766418 147975.18296102676 184284.79987125326 172815.31422063147 180064.17805243967 213085.122423874 180411.08281266838 0.7239743017708445 0.6833347447595115 0.7582887453689634 0.7505417048975976 0.8202111569535795 1.021471613595974 0.9578974391505424 0.9980771427407876 1.1811088271397 1.0 17.46092844178705 2.8512842158462703 1.0433349265140353 1.0502776383312644 0.7059734298110494 0.8624683343154284 0.05773393793673083 0.17619105527318873 0.40916152282727025 0.0289264320267472 0.030210477271395832 710.0422897550524 -2.8512842158462703 -0.34430420852021504 S(ph)KGKNSDEEAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKGKNSDEEAPK 12 2 Q9UNL4-8;Q9UNL4-3;Q9UNL4-4;Q9UNL4-7;Q9UNL4-5;Q9UNL4-6;Q9UNL4-2;Q9UNL4 Q9UNL4-8 ING4 Inhibitor of growth protein 4 1 S(0.5)KGKNS(0.5)DEEAPK 92.935 0.0038902 73844000.0 286430.0 170520.0 148820.0 148280.0 139000.0 205300.0 219020.0 159330.0 414600.0 209330.0 True False 284887.89270536485 176195.65511848338 169772.5624333712 167052.23279650914 156700.82608245243 191108.09422421711 208425.16586234962 171220.01366134643 312427.38535537076 195970.38018357032 1.4537293464374732 0.899093296412634 0.866317462232512 0.8524361316237034 0.7996148496301679 0.9751886690488707 1.0635544293332115 0.8737035336715702 1.5942581989314522 1.0 17.580276090045203 1.264193394152089 24.999908571623415 1.2971297820869194 0.9577952824632692 0.25377448897655774 0.2211372841894218 234.92733378596134 229127.6455021936 0.13911017577784834 0.05075903095092503 18.37356347912699 -1.264193394152089 -0.33933449962365025 S(ph)KGSLEITESQSADAEPPPPPKPDLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKGSLEITESQSADAEPPPPPKPDLSR 27 2 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 S(0.612)KGS(0.388)LEITESQSADAEPPPPPKPDLSR 223.71 1.0698e-34 303820000.0 95887.0 123110.0 126120.0 82839.0 144100.0 209290.0 139570.0 115020.0 169420.0 153860.0 True False 95370.75504604715 127207.64192843343 143876.5997453083 93326.4089063259 162450.28085238437 194822.2749156667 132818.46589082322 123603.37645972539 127668.7111116904 144040.5230738267 0.6621105853466368 0.8831378782430154 0.998861963806988 0.6479177311685564 1.127809573206853 1.3525518427603338 0.9220909717381981 0.8581152985425744 0.8863388467858793 1.0 17.13611521814072 5.402942634559086 0.8655100924903383 0.9818694493626873 2.8768440757999955e-13 0.2357995798736937 0.17215831034344925 10.62796948345866 2.72194090931641 0.06011335085385071 13.014648985065659 252896.39265498618 -5.402942634559086 -0.9818694493623996 S(ph)KLSPSPSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKLSPSPSLR 10 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.712)KLS(0.152)PS(0.136)PSLR;S(0.737)KLS(0.102)PS(0.161)PSLR 89.9 0.029457 430560000.0 501170.0 518040.0 489970.0 470100.0 443380.0 530510.0 529960.0 472210.0 652590.0 555750.0 True False 498471.7564052213 535282.6482382074 558953.5171044146 529614.6117995605 499841.8148808471 493837.09238621267 504323.81015619915 507448.70803379384 491767.93875798676 520281.5591984871 0.9580807691380325 1.0288326364340687 1.0743289036911152 1.0179384651177168 0.9607140711480757 0.9491727770382385 0.9693286283933041 0.9753347952895683 0.9451957888255225 1.0 18.9889330479356 3.2721088641767158 6.21979569823906 0.9654404447904589 1.0248458426588187 0.42778897239312363 0.029923780774002626 0.16105110980021045 17.65878689236632 0.00845357371107104 0.011258970465760024 1871.15112122127 -3.2721088641767158 0.059405397868359855 S(ph)KPLTR ddPTM_BT-474_Trastuzumab_2h_R1 10 SKPLTR 6 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 S(1)KPLTR;S(0.955)KPLT(0.045)R;S(1)KPLTR;S(0.983)KPLT(0.017)R;S(1)KPLTR;S(0.999)KPLT(0.001)R;S(1)KPLTR;S(0.999)KPLT(0.001)R;S(1)KPLTR;S(0.884)KPLT(0.116)R 122.44 0.011641 19806130000.0 13898280.0 9349510.0 8250210.0 8687160.0 7593348.0 7027298.0 8736150.0 10245360.0 16041130.0 11002140.0 True False 13823453.204724085 9660702.788451852 9411767.855889147 9786953.565285424 8560315.858500281 6541517.429740155 8313549.049166123 11009920.78808393 12088008.451629529 10299974.005794046 1.3420862224456076 0.9379346766329134 0.9137661755840105 0.9501920645411306 0.8311007244955031 0.6351003823951744 0.8071427213786657 1.0689270460188072 1.173596015371462 1.0 23.29613736067252 4.739453304306907 4.751813407097652 0.9151233953845754 1.3668040086044326 0.44463207466652666 0.14001223060274018 0.18283044567623996 11.67196209367133 0.03681672036330308 0.27441867494671607 54884.953968905014 -4.739453304306907 0.4516806132198572 S(ph)KS(ph)ISSSNPDLAVAPGSVDDEVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSISSSNPDLAVAPGSVDDEVSR 24 1 K7ESB7;K7EKT0;K7EP20;Q96HP0 K7ESB7;Q96HP0 DOCK6 Dedicator of cytokinesis protein 6 2 S(0.559)KS(0.559)IS(0.442)S(0.227)S(0.213)NPDLAVAPGSVDDEVSR 73.797 0.015119 408950000.0 289870.0 218070.0 179400.0 248460.0 218640.0 267250.0 243650.0 237810.0 353100.0 294990.0 True False 288309.3721275846 225328.32812390104 204657.96062724612 279915.0105248223 246482.5080191903 248775.63653883137 231863.71866661258 255556.58977471173 266083.2362975912 276163.48564635485 1.0439807835304604 0.8159236822946553 0.7410753820268761 1.013584434849115 0.8925238883131242 0.9008274064783662 0.8395886158662157 0.9253815332486367 0.9634989784215279 1.0 18.075163053412258 1.240391564988242 2.3671527316855743 0.9954284436967478 0.8886141491846665 0.15332392226993086 0.08356671020021288 0.5032554806534008 4.764004555005404 0.07505355528331238 0.021564010345414518 17.393683568619586 -1.240391564988242 -0.10681429451208124 S(ph)KS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKSPFR 6 1 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 2 S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR 79.148 0.038643 1723060000.0 906390.0 666390.0 544520.0 559520.0 593060.0 785730.0 774820.0 754090.0 1167960.0 763990.0 True False 901510.096949396 688570.3883087392 621183.6829473146 630355.1746311223 668582.6756579807 731414.3345094702 737338.9965001629 810364.0249914315 880131.9078621767 715231.504115254 1.260445173013694 0.9627237955080085 0.8685071607908585 0.8813302699954131 0.9347780009844809 1.022626003330536 1.0309095618099988 1.1330094106996265 1.2305552856636335 1.0 19.448050759377832 1.9849006762360986 2.060542534807448 1.1356948228928083 0.9724673937276527 0.20055520560723372 0.11540950853000498 0.4552178104184499 3.5912892044939024 0.06775512608632839 0.03501709366840013 96.58299670461938 -1.9849006762360986 -0.16322742916515565 S(ph)KS(ph)PPKS(ph)PEEEGAVS(ph)S ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPPKSPEEEGAVSS 16 2 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 4 S(1)KS(1)PPKS(1)PEEEGAVS(0.556)S(0.444);S(1)KS(1)PPKS(1)PEEEGAVS(0.555)S(0.445) 129.85 2.6896e-05 1471810000.0 2272700.0 1252040.0 1267300.0 812440.0 951760.0 1877230.0 1610980.0 1688190.0 3226700.0 1382550.0 True False 2260464.03572071 1293713.3945258374 1445724.824430931 915294.8206986513 1072960.994476512 1747461.5086240957 1533050.742858769 1814171.3102551224 2431523.020564822 1294314.4753393936 1.7464565828393244 0.9995355990951128 1.1169811139227463 0.7071657144672231 0.8289801396180488 1.3501058219764392 1.1844499710603749 1.4016464660023311 1.8786184245735418 1.0 20.30375675612301 2.031339572792237 1.7006662691780619 1.4645969629440672 1.074855494256799 0.13696144137276733 0.3330968903314472 0.6238849435153542 3.386372208124547 0.20393788388392398 0.10368482254144362 107.48294879434135 -2.031339572792237 -0.3897414686872682 S(ph)KS(ph)PPKS(ph)PEEEGAVSS ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPPKSPEEEGAVSS 16 2 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 3 S(1)KS(1)PPKS(1)PEEEGAVSS 77.959 0.014838 1027400000.0 1395000.0 797080.0 690450.0 510060.0 580670.0 1031700.0 1002200.0 960150.0 1970500.0 831320.0 True False 1387489.4749990692 823610.3259549653 787659.3585010158 574633.5437023701 654614.8825992636 960381.0073605685 953719.7572242117 1031801.2685429103 1484896.6783472223 778264.4458711412 1.782799512890505 1.0582653882294042 1.0120716199740547 0.7383525570915177 0.8411214029783002 1.234003445044412 1.2254443361557865 1.325772074025527 1.90795903143837 1.0 19.569900925178146 1.8955152779109217 1.8655870439548934 1.4634031090285842 1.0739775117265749 0.13561447565143547 0.3344703804602246 0.5838491982491805 3.7911619746483365 0.2153193625194197 0.10014810788806243 78.61678470166082 -1.8955152779109217 -0.3894255973020093 S(ph)KS(ph)PPKSPEEEGAVS(ph)S ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPPKSPEEEGAVSS 16 2 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 3 S(0.915)KS(0.583)PPKS(0.514)PEEEGAVS(0.805)S(0.182) 102.39 0.00093987 571390000.0 1855400.0 954280.0 970910.0 648570.0 704820.0 1485000.0 1309300.0 1364200.0 2668100.0 1097200.0 True False 1845410.732554317 986042.6329255578 1107605.6886989956 730678.8955006205 794574.6492045629 1382345.4453139903 1245964.1569882839 1466003.5312672353 2010582.5057083063 1027175.7566398212 1.7965871182466093 0.9599551260352742 1.07830201554044 0.7113474892465095 0.7735527674483269 1.3457730445625278 1.2129999651317518 1.4272178074596915 1.9573889791611547 1.0 19.970251626869526 2.0635320504603736 1.715154817951943 1.5007200644975058 1.055632937667124 0.15848658360478807 0.35867282312678495 0.5808019195986999 3.2318779718394803 0.2131158545590769 0.11181873806225408 115.75294533547894 -2.0635320504603736 -0.44508712683038176 S(ph)KS(ph)PPKSPEEEGAVSS ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPPKSPEEEGAVSS 16 2 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 2 S(1)KS(0.999)PPKS(0.002)PEEEGAVSS 85.932 0.034338 739570000.0 919200.0 542120.0 474120.0 366440.0 397440.0 904110.0 718220.0 749690.0 1405500.0 641280.0 True False 914251.129332721 560164.136481539 540871.9748750841 412831.26642805996 448051.62818856066 841611.0037460155 683476.9547331602 805635.674648685 1059133.3577351032 600352.9613725697 1.522856033294972 0.9330580050789653 0.9009233062472185 0.6876475889853457 0.7463136804792186 1.4018603353298442 1.1384585380749128 1.3419367047124802 1.7641844479514803 1.0 19.195451418329093 2.727210642153537 24.83090653406214 1.3334361071463108 0.9385569286965729 0.3044063969496088 0.2796889614779087 825.1774829874698 1805278.8872873192 0.09088843812699274 0.08640656111866186 533.5936371119517 -2.727210642153537 -0.39487917844973786 S(ph)KS(ph)PTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 S(0.999)KS(0.689)PT(0.312)LR;S(0.973)KS(0.847)PT(0.18)LR 97.597 0.0067602 1553270000.0 4455400.0 3394100.0 2401940.0 2723080.0 2884160.0 3363000.0 3727500.0 3726800.0 6041300.0 3763300.0 True False 4431412.621441472 3507070.5667232242 2740112.2739632535 3067821.6487963186 3251440.680244365 3130523.7256504763 3547186.5845671976 4004912.7403069516 4552502.564272548 3523122.9720767774 1.2578081028007049 0.9954436999557552 0.7777509600659888 0.8707676890959977 0.922885946932399 0.8885649892047692 1.0068301937460433 1.1367507668760632 1.2921781613512575 1.0 21.74842340127005 1.8001975707553004 3.0533136460253494 1.1643365824952183 0.9418763325908099 0.27965773459185084 0.13495650445700558 0.28853847060596444 5.032023993132483 0.0764096573929782 0.03793116052242828 63.12444470884374 -1.8001975707553004 -0.22246024990440838 S(ph)KSDGEAKPEPSPSPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKSDGEAKPEPSPSPR 16 2 P26358;K7EJL0;K7ENQ6;K7ERQ1 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 S(0.64)KS(0.36)DGEAKPEPSPSPR;S(0.506)KS(0.494)DGEAKPEPSPSPR;S(0.711)KS(0.289)DGEAKPEPSPSPR 164.94 3.7575e-09 1011440000.0 786450.0 536530.0 497100.0 462200.0 391078.0 672980.0 602890.0 565030.0 951720.0 550060.0 True False 782215.8405828088 554388.0767107665 567087.3591293426 520714.4726095662 440879.46519908885 626458.4766245183 573725.9074365435 607195.4077642041 717181.3583946293 514954.69986994076 1.51899932320332 1.076576399537251 1.1012373695639028 1.0111850085863479 0.8561519397928388 1.216531234267285 1.1141288885827165 1.1791239266629863 1.3927076664719515 1.0 18.974085999650175 4.7411989243946415 24.584612305547093 1.1072657589377837 1.5189995103640546 0.4564343292933992 0.13542544653116498 182.9996647769067 1705128.1211459166 0.033005009323195424 0.22625822159081044 55106.004634191224 -4.7411989243946415 0.4117337514262709 S(ph)KSDLSER ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSDLSER 8 1 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 S(0.508)KS(0.492)DLSER;S(0.736)KS(0.264)DLSER 129.84 0.00065016 2188070000.0 2039660.0 1752950.0 1694900.0 1734950.0 1546150.0 1662330.0 1906280.0 1887990.0 2616550.0 1982490.0 True False 2028678.6971875282 1811295.8810693491 1933527.187665105 1954594.4921115674 1743043.0377509652 1547417.0398039098 1814065.953703223 2028881.4008189642 1971736.3124736992 1855965.7909049198 1.0930582379960776 0.975931717031384 1.0417903159316144 1.0531414434953346 0.9391568779406777 0.8337529966268561 0.9774242405721996 1.0931674553277921 1.0623775083226792 1.0 20.82373868833133 -0.8594509179288005 5.8200656057177556 0.9999999983877826 1.0070064091649382 0.0008500209407820147 0.07595657202567536 1.1802941812379158e-09 4.0559480009573434e-10 0.07920818339412668 0.018669543555750064 0.13821305994568028 0.8594509179288005 0.007006410777155581 S(ph)KSDSYTLDPDTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 S(0.682)KS(0.314)DS(0.004)YTLDPDTLR 197.09 1.4491e-08 933530000.0 2069700.0 1459300.0 1414400.0 1427000.0 1224100.0 1765000.0 1529700.0 1657100.0 2596100.0 1895600.0 True False 2058556.9651652891 1507871.9183345232 1613535.2258148126 1607658.053686395 1379981.8791908624 1642989.7043630965 1455702.5669785226 1780761.2165833004 1956325.9409577346 1774621.1850951926 1.1599979660193598 0.8496866435490227 0.9092279746047666 0.9059161849238031 0.7776205371496445 0.9258255892369305 0.820289185773716 1.0034599110726712 1.1023907284487844 1.0 20.75907966565385 1.5524463753662425 5.557783421264766 1.0517412169246985 0.9006482294899377 0.2678807879217099 0.09877533447327601 0.16882238075789052 10.92805012422383 0.053476644893079246 0.024271372301985835 35.68176883985148 -1.5524463753662425 -0.15109298743476074 S(ph)KSEDMDNVQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 S(0.791)KS(0.209)EDMDNVQSK 228.84 5.8211e-12 1425200000.0 1918200.0 1300800.0 1057700.0 1109000.0 1071500.0 1661000.0 1623400.0 1598700.0 2324300.0 1610900.0 True False 1907872.6243320561 1344096.341649796 1206614.9663067912 1249399.2862916694 1207949.1737219275 1546178.9795734268 1544869.9400097616 1718003.1120341106 1751507.4090243317 1508090.9828391233 1.2650911954531459 0.8912567987903542 0.8000942781550386 0.8284641314806866 0.8009789777058738 1.0252557684965393 1.024387757495505 1.1391906268147085 1.1614069899993393 1.0 20.52429203807085 2.3277474552247135 2.278465454197773 1.1045104025328827 0.9059444734569438 0.24149907552404315 0.13417406646472257 0.38725301240523147 4.124702255880523 0.05844534199126782 0.043233362025942884 212.69018804543686 -2.3277474552247135 -0.19856592907593884 S(ph)KSEEAHAEDSVMDHHFR ddPTM_BT-474_Trastuzumab_2h_R1 11 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.7)KS(0.3)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.661)KS(0.339)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.637)KS(0.363)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR 305.61 2.2883e-50 44472410000.0 16141860.0 13821157.0 12096448.0 13360843.0 12003453.0 14072140.0 14231936.0 7747156.0 20134632.0 14066422.0 True False 16054954.019289259 14281185.855679153 13799522.73418914 15052324.353881909 13532021.58951001 13099366.084054446 13543482.884404808 8325288.119981065 15172721.73384606 13168690.905090228 1.2191761607133913 1.0844802994167706 1.0479039134296235 1.1430387775343396 1.0275904937733287 0.9947356330606116 1.0284608380601985 0.6322031688634295 1.1521814767465757 1.0 23.650608599129804 2.586102518048611 1.4259238732394592 0.893014580398036 1.1136309302343932 0.20741608935875422 0.13415890922357188 0.4874042889350689 2.008272424503898 0.0625930945382187 0.052019040400932144 385.5693630902529 -2.586102518048611 0.22061634983635714 S(ph)KSKDQAEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKSKDQAEEK 10 2 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 S(1)KSKDQAEEK;S(1)KSKDQAEEK;S(0.645)KS(0.355)KDQAEEK;S(0.899)KS(0.101)KDQAEEK 168.93 2.4982e-06 678740000.0 1445580.0 737302.0 661102.0 612040.0 698200.0 765722.0 1114542.0 1033291.0 2426860.0 1167086.0 True False 1437797.1578990365 761842.6513615292 754179.4151984045 689524.2012461252 787111.6314443756 712789.4404557041 1060627.345496094 1110400.4213653826 1828792.8712579233 1092601.5722874042 1.3159391258141353 0.6972739841171762 0.690260232391484 0.6310847602045632 0.7204013351331049 0.6523781939682289 0.9707356939599027 1.016290338152009 1.6737966681022376 1.0 20.05933597355693 1.5923151486328806 2.5476565084438842 1.3333720010054935 0.7790695548473706 0.4009204745610885 0.24933395512582857 0.2165580053066765 3.1676665524241012 0.16990142804990896 0.0646373887755131 39.11246149750453 -1.5923151486328806 -0.5543024461581229 S(ph)KSKPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSKPPK 7 2 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BV80;H3BTY0 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 1 S(0.997)KS(0.003)KPPK;S(0.884)KS(0.116)KPPK 90.108 0.0090689 954610000.0 1621420.0 735900.0 643110.0 561890.0 548580.0 644390.0 932820.0 1018650.0 1736130.0 1204550.0 True False 1612690.454876697 760393.9866390567 733654.2979876716 633025.2163881207 618438.4113115962 599844.8360308979 887695.9328815496 1094666.8355998895 1308284.0244501203 1127674.587732862 1.4301026842494846 0.6743026710992875 0.6505904327086504 0.5613545106667597 0.5484192142300007 0.5319307915210348 0.7871915732944036 0.9707293642225875 1.16016095306392 1.0 20.104919379618558 1.6828032298238897 2.8487860145905777 1.075599916409123 0.7083120275072736 0.24010985929242168 0.24906975641978876 0.3073225055983509 5.655844171448391 0.15773775011086888 0.06860586059554716 48.17294861412175 -1.6828032298238897 -0.3672878889018494 S(ph)KSLDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSLDSR 7 1 Q9P2M7;Q9P2M7-2;A6PVU7 Q9P2M7 CGN Cingulin 1 S(0.5)KS(0.5)LDSR 76.465 0.024639 237470000.0 1216400.0 826600.0 808300.0 811050.0 767320.0 631750.0 935720.0 954020.0 1249600.0 982530.0 True False 1209851.0375547442 854112.8813097476 922101.6141304519 913728.84684117 865033.6537380402 588078.6094795379 890455.6488024736 1025213.816815401 941652.8237821306 919824.0942137474 1.3153069648484341 0.9285611093280082 1.002476038550231 0.9933734641102356 0.9404337842198608 0.6393381225594217 0.9680716719685653 1.1145759534509032 1.0237314174587284 1.0 19.810998463139022 4.741738533376403 24.390153989706594 0.9601721566207435 1.3153071513091616 0.4581335316853612 0.11693770297493018 219.3283511192266 1683205.7667906326 0.03055438946784006 0.21765609932205018 55174.51615616051 -4.741738533376403 0.35513499468841814 S(ph)KSLTNLVAAGDDVLEDQEILMHHPPQVDELDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSLTNLVAAGDDVLEDQEILMHHPPQVDELDR 33 1 Q7Z5Y7-2;Q7Z5Y7-3;Q7Z5Y7 Q7Z5Y7-2 KCTD20 BTB/POZ domain-containing protein KCTD20 1 S(0.333)KS(0.333)LT(0.333)NLVAAGDDVLEDQEILMHHPPQVDELDR 61.519 0.01186 31847000.0 6782.6 5642.8 5857.4 3412.6 3709.6 4694.4 3472.5 3792.5 8283.6 3364.4 True False 6746.083235217707 5830.617186855369 6682.071006566512 3844.63481009824 4181.995571478171 4369.887177428959 3304.521908761797 4075.5156079247904 6242.21777455318 3149.6811115922437 2.1418305524292873 1.85117698594822 2.1215071525728377 1.2206425583682914 1.3277520559419635 1.3874062238700318 1.0491607853886127 1.2939454705192406 1.9818570685073513 1.0 11.62099005549276 3.738401110427047 24.999746631075617 1.319463666712441 2.019472133429624 0.6111664881707473 0.26128403038791215 9.297511928176244 1457285.9988605285 0.06666286509450067 0.11093182925944214 5475.21415233623 -3.738401110427047 0.7000084667171831 S(ph)KSPASTSSVNGTPGSQLSTPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 S(0.582)KS(0.39)PAS(0.019)T(0.008)SSVNGTPGSQLSTPR;S(0.635)KS(0.364)PAS(0.001)TSSVNGTPGSQLSTPR;S(0.645)KS(0.354)PASTSSVNGTPGSQLSTPR;S(0.5)KS(0.5)PAS(0.001)TSSVNGTPGSQLSTPR 192.35 6.6823999999999984e-18 3410440000.0 882670.0 802070.0 728870.0 702220.0 697580.0 960230.0 893760.0 802700.0 1052570.0 920530.0 True False 877917.8027938564 828766.4150884469 831488.5605483901 791120.979999762 786412.6781194037 893851.5602382849 850525.4143052391 862601.5500280091 793178.2272153933 861780.9872946165 1.0187249611411109 0.9616902987036045 0.9648490426305143 0.9180070013882796 0.9125435461139424 1.0372142962266402 0.986939172300944 1.0009521708479188 0.9203942056152952 1.0 19.71696174434212 2.744212821028262 24.993801829351742 0.9899604840977096 0.9539994968701079 0.16344489325937994 0.03831896600022301 880.9157773505749 3895372.167147536 0.012082601672428762 0.0124721115016076 554.8975675295758 -2.744212821028262 -0.03596098722760177 S(ph)KSPASVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPASVDR 9 1 Q13243;Q13243-3 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 1 S(0.682)KS(0.317)PAS(0.001)VDR 94.191 0.0053832 384310000.0 322300.0 361960.0 399710.0 336700.0 323040.0 368810.0 400970.0 381650.0 485220.0 422470.0 True False 320564.772610896 374007.6197905593 455985.6936583987 379326.1854773708 364177.2291919095 343315.0327853562 381573.5492458508 410130.66097943176 365644.03261488915 395507.6029052354 0.8105148175563747 0.945639520057905 1.1529125870373065 0.9590869624022329 0.9207843958417335 0.8680364935174592 0.964769188867595 1.036972887415517 0.9244930563382832 1.0 18.593345902556504 4.7003084518922105 4.5349696157129324 0.9793255599420422 0.8043839965723147 0.31635231543489484 0.0732775712566509 0.2138370921188818 9.870776007200876 0.018420036753792158 0.1057721218502821 50154.332164708154 -4.7003084518922105 -0.17494156336972744 S(ph)KSPIPGQGYLGTERPSSVSSVHSEGDYHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPIPGQGYLGTERPSSVSSVHSEGDYHR 30 2 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KRE4 O75376 NCOR1 Nuclear receptor corepressor 1 1 S(0.596)KS(0.404)PIPGQGYLGTERPSSVSSVHSEGDYHR 129.94 4.5693e-06 1217800000.0 124210.0 146700.0 161020.0 171020.0 157620.0 200490.0 222630.0 118170.0 222250.0 156880.0 True False 123541.26716102843 151582.8208179773 183690.2163890704 192671.11446492415 177691.97271306592 186630.59820269523 211860.53637081047 126988.44545510132 167479.465497422 146867.7840882747 0.8411733582551645 1.0321039549889897 1.250718239737747 1.311867784082038 1.2098771273505726 1.2707388442009933 1.4425255864381528 0.8646446614784837 1.140341747082932 1.0 17.164158445326034 1.7064906378826912 16.611503172630574 1.0024199563073652 1.1981573659022067 0.2209776321854695 0.1654826893972752 0.2871273342194839 138.11629124771858 0.08019242835141446 0.044330229257063876 50.87338527143172 -1.7064906378826912 0.19573740959484143 S(ph)KSPLPPEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.55)KS(0.45)PLPPEEEAK 142.01 3.694e-05 190050000.0 422210.0 292010.0 268300.0 201150.0 254790.0 393080.0 301470.0 335250.0 499110.0 323350.0 True False 419936.8682719408 301729.3763262277 306074.307894594 226615.56937562596 287235.9962413529 365907.30481079087 286886.7443727625 360268.0573650056 376111.02823135286 302713.52616613754 1.3872418374904987 0.9967489069537985 1.0111021855251092 0.7486139527549657 0.9488707025391059 1.2087576972360687 0.9477169652977817 1.1901287065952928 1.2424652211442073 1.0 18.207593615069126 1.6913506067896467 8.531545954439363 1.160937041161346 1.0256130266968875 0.0742595729256057 0.16959221942257757 0.2702299940430402 36.12023399941078 0.08303775525710352 0.044049180114265625 49.13043470611446 -1.6913506067896467 -0.13532401446445852 S(ph)KSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_BT-474_Trastuzumab_2h_R1 26 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.53)KS(0.468)PLPPEEEAKDEEEDQT(0.001)LVNLDT(0.001)Y(0.001)T(0.001)S(0.001)DLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.487)KS(0.404)PLPPEEEAKDEEEDQT(0.108)LVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.529)KS(0.459)PLPPEEEAKDEEEDQT(0.012)LVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.499)KS(0.499)PLPPEEEAKDEEEDQT(0.001)LVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQT(0.001)LVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.487)KS(0.487)PLPPEEEAKDEEEDQT(0.025)LVNLDT(0.001)YTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.497)KS(0.497)PLPPEEEAKDEEEDQT(0.004)LVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.494)KS(0.494)PLPPEEEAKDEEEDQT(0.009)LVNLDT(0.001)YT(0.001)S(0.001)DLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.571)KS(0.429)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 334.16 2.2427999999999996e-129 24450952000.0 2824969.8 1842333.8 1589721.8 1446010.3 1491491.0 2286137.1 2194379.9000000004 2091175.1 3709564.7 2209491.5999999996 True False 2809760.476480449 1903654.7668187001 1813540.8113304095 1629075.0557172233 1681423.5380902395 2128101.823264877 2088229.3608917282 2247229.204733996 2795392.1853053053 2068479.9544470732 1.3583696909605916 0.9203157916643033 0.8767504888947248 0.7875711109575111 0.8128788168699957 1.0288240012621932 1.0095477872058636 1.0864157517710655 1.351423386673594 1.0 20.980139545867527 1.731182950516059 2.09565374863901 1.1795822920962615 0.9463546507221228 0.18628753222848848 0.17034621206204292 0.43792755716445697 3.955457456879714 0.11724948846132721 0.048950229703628 53.84965813443171 -1.731182950516059 -0.23322764137413876 S(ph)KSPPKVPIVIQDDSLPAGPPPQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-5;Q7Z422;Q7Z422-4;Q7Z422-2;Q7Z422-3 Q7Z422-5 SZRD1 SUZ domain-containing protein 1 1 S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR;S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR 162.12 1.0342e-11 7196500000.0 2176230.0 1509000.0 1506740.0 1251070.0 1240870.0 1964150.0 1952840.0 1628420.0 2928860.0 2179130.0 True False 2164513.4194818805 1559226.1527902363 1718875.895181143 1409455.333724903 1398887.4392872858 1828372.933611771 1858373.668626749 1749940.969349213 2207081.697713291 2040056.0577529457 1.0610068342269088 0.7643055429112435 0.8425630700925091 0.6908904921354815 0.6857102940730531 0.896236614020138 0.910942452568527 0.8577906291833545 1.0818730638923317 1.0 20.96017736521262 1.5175181489301608 1.2877803064720357 1.034735299017937 0.8128686599846255 0.332334987502779 0.10899145454537983 0.47194572631828663 1.500062937788204 0.09697374443708447 0.033368933257828956 32.9244211982445 -1.5175181489301608 -0.2218666390333115 S(ph)KSPRDPDANWDSPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPRDPDANWDSPSR 16 2 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.5)KS(0.5)PRDPDANWDSPSR;S(0.615)KS(0.385)PRDPDANWDSPSR 130.05 4.0999e-05 511460000.0 340099.0 353537.0 321693.0 374461.0 322961.0 390319.0 404645.0 350087.0 523348.0 438833.0 True False 338267.9447725514 365304.26532737043 366984.5781943182 421867.72420564876 364088.1690101791 363337.1662420954 385070.77545598726 376212.26964576525 394375.89790391346 410826.3022361667 0.8233843425587085 0.889193957005636 0.8932840380394006 1.0268761321010424 0.8862338341737432 0.8844058042642756 0.937307989678388 0.9157453347022964 0.9599577625806524 1.0 18.64816902437663 S(ph)KSPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 S(0.806)KS(0.195)PS(0.999)PPR 104.22 0.055261000000000005 465370000.0 512780.0 408450.0 320810.0 346250.0 374180.0 449090.0 466940.0 458570.0 654720.0 439060.0 True False 510019.2494552136 422045.0113367607 365977.2594694918 390085.2144981881 421829.60506138223 418045.4653441483 444352.3283159781 492790.8219712777 493373.02879852505 411038.814901822 1.2408055662019009 1.026776537971402 0.8903715323257407 0.9490228181768218 1.0262524846032792 1.0170462014493689 1.081047123060904 1.1988912095539748 1.2003076374097879 1.0 18.648915110247188 2.0207305557974875 3.8002963526016527 1.1532665183370545 1.0162087649485976 0.18042947009086918 0.09949873651479207 0.30206415149746413 9.430405466805956 0.04432488803093014 0.02850264396345602 104.88914753761237 -2.0207305557974875 -0.13705775338845694 S(ph)KSQEEPKDTFEHDPSESIDEFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSQEEPKDTFEHDPSESIDEFNK 24 2 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 S(0.573)KS(0.426)QEEPKDTFEHDPSESIDEFNK 139.81 1.5964e-07 173960000.0 172810.0 85427.0 65815.0 71726.0 76090.0 142190.0 127780.0 122650.0 254790.0 111380.0 True False 171879.61016099592 88270.38605328796 75081.17992576488 80806.5042457676 85779.61047923595 132360.73997925676 121598.7932329972 131802.76580408047 192000.4185110826 104271.63304278445 1.64838321934088 0.8465426643607769 0.7200537455374635 0.7749615296867106 0.822655289613035 1.2693839744980964 1.1661732887898966 1.2640328146582256 1.8413485327529253 1.0 16.669987202430896 2.3066106056637703 1.5434542797103474 1.3732672437078028 0.9404080546944859 0.2129532507868711 0.3197420488144355 0.5660060248508999 2.6984934151041453 0.17045997226585413 0.10989206089789826 202.58654864305336 -2.3066106056637703 -0.432859189013317 S(ph)KTPPPPPQTAQTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKTPPPPPQTAQTK 14 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 S(0.5)KT(0.5)PPPPPQTAQTK 65.423 0.035252 273350000.0 183960.0 113660.0 106670.0 131050.0 123150.0 160890.0 166580.0 155220.0 228670.0 180270.0 True False 182969.5797998773 117443.10439107899 121688.2088077389 147640.91656314078 138832.42253276287 149768.05299432197 158521.8890026033 166803.30459118943 172317.34252101462 168765.01426308806 1.0841677144923278 0.6958972207829565 0.7210511570723951 0.8748312984644028 0.8226374591853307 0.8874354299573507 0.9393053986620904 0.9883760880152535 1.0210489613231617 1.0 17.364656332388904 2.1832966608595163 1.2886748678941558 1.010281954185959 0.8244166259784625 0.3405609597012652 0.09887859153059188 0.47922937275288907 1.524686664655222 0.06282634551315645 0.03430419002255663 152.50941698751922 -2.1832966608595163 -0.18586532820749635 S(ph)KTPTGPELDTSYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKTPTGPELDTSYK 14 1 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;H0Y325;Q8NF91-2;Q8NF91-8;Q8NF91-11;Q8NF91-3;Q8NF91-9;A0A5F9ZH87;A0A5F9ZHE1;Q5JV20;F8WAI0;H0Y326;A0A5F9ZH86 Q8NF91 SYNE1 Nesprin-1 1 S(0.499)KT(0.499)PT(0.003)GPELDTSYK;S(0.499)KT(0.499)PT(0.001)GPELDTSYK 131.11 3.5203e-05 903840000.0 263557.0 204597.0 211495.0 170343.0 197709.0 284610.0 265582.0 261461.0 436100.0 272760.0 True False 262138.03839593547 211406.88746350165 241271.65765250544 191908.40633433868 222886.0692369469 264935.5805998757 252734.78403823648 280972.54749205615 328628.99844061065 255352.22327841536 1.0265743334066115 0.8279030616976486 0.9448582610907694 0.7515439022635699 0.8728573668768492 1.0375299545013612 0.9897496908130499 1.1003332725468635 1.2869635291261994 1.0 17.96212909467289 2.186844241693932 1.3294909857520765 1.1386714436207555 0.8815258160479067 0.5068622171489465 0.09994843003273486 0.33830717892545603 1.1493947949484657 0.06191083653263024 0.034113597978877586 153.76030850473234 -2.186844241693932 -0.25714562757284876 S(ph)LDFFR ddPTM_BT-474_Trastuzumab_2h_R1 8 SLDFFR 6 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 S(1)LDFFR;S(1)LDFFR;S(1)LDFFR;S(1)LDFFR;S(1)LDFFR;S(1)LDFFR;S(1)LDFFR;S(1)LDFFR 160.52 0.0092162 566204000.0 473264.0 343466.0 308927.0 376507.0 265524.0 296424.0 295807.0 322917.0 497241.0 363495.0 True False 470715.9992085732 354898.0581804181 352421.2363583795 424172.747595868 299336.90751595027 275932.9065870404 281497.6853175233 347014.70627930097 374702.61823803623 340296.43789627403 1.3832527960579253 1.0429085310866368 1.0356301069063827 1.2464801283790117 0.8796357357322422 0.8108604024563657 0.8272131411593758 1.0197423999632778 1.1011064957202097 1.0 18.376432524193223 7.9999999999942855 0.6574440542328446 0.9568840341062423 38.40596091197966 0.48302492156347043 0.12232587056186446 209.18750367162656 1.3050471308312914 0.05073605000138067 11421.400878714663 99999999.99868418 -7.9999999999942855 37.449076877873416 S(ph)LDGSGSEPAVCEMCGIVGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDGSGSEPAVCEMCGIVGTR 21 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 S(1)LDGSGSEPAVCEMCGIVGTR 248.91 1.4652e-30 42141000.0 68602.0 61146.0 57117.0 65202.0 57023.0 70621.0 60243.0 66346.0 88466.0 77299.0 True False 68232.6544543987 63181.207646462484 65158.57713013619 73456.56651468821 64284.54104819924 65739.13649395248 57328.81593939144 71297.07541816168 66664.73968366669 72365.71164099661 0.9428865260511519 0.8730821021964369 0.9004067762559328 1.0150741953468694 0.8883287345685518 0.9084293514597312 0.792209661722079 0.9852328375054695 0.921219983496988 1.0 16.143018660241403 1.0036725846043018 1.4844291796704456 0.9954643968869056 0.9087281445470138 0.17112640662196743 0.057724107969585395 0.7315190078646024 3.2917875696005097 0.05355159926898127 0.015874446025429038 10.084922952412061 -1.0036725846043018 -0.0867362523398918 S(ph)LDGVTNDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDGVTNDR 9 0 Q9UBM7;E9PRL8;E9PQ71;E9PIP9;E9PJ54;E9PM00 Q9UBM7 DHCR7 7-dehydrocholesterol reductase 1 S(1)LDGVTNDR;S(1)LDGVTNDR 177.47 5.4639e-05 744110000.0 271870.0 350260.0 291840.0 266150.0 383420.0 364360.0 211850.0 225990.0 347500.0 316840.0 True False 270406.2821275966 361918.1923633585 332928.5352812464 299844.5627110257 432246.2642916115 339172.6508111826 201602.00615440938 242854.52135396784 261863.28126143556 296618.9999396289 0.911628325166738 1.2201450090419699 1.1224113605298638 1.010874430741299 1.4572440213863136 1.1434623233178411 0.6796665291011081 0.818742297032207 0.8828270654096091 1.0 18.17825148706668 2.25666906532986 24.403857355988126 0.8235998107893989 1.1549079218919784 0.47729728179184383 0.15236335891011937 139.78586349637115 188381.9320307413 0.05202001757521148 0.0434346928007259 180.57975743969098 -2.25666906532986 0.3313081111025795 S(ph)LDLFNCEVTNLNDYR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLDLFNCEVTNLNDYR 16 0 Q92688;Q92688-2;P39687;H0YN26 Q92688;P39687 ANP32B;ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A 1 S(1)LDLFNCEVTNLNDYR;S(1)LDLFNCEVTNLNDYR;S(1)LDLFNCEVTNLNDYR 172.5 4.7744e-09 113114000.0 35037.4 34196.2 29529.8 38201.0 23309.8 30776.0 31607.1 29268.2 31114.800000000003 37461.6 True False 34848.76253142112 35334.399844960586 33687.33916237715 43037.242683163204 26278.16486199102 28648.527558911395 30078.14382215261 31452.3417049082 23446.9744569592 35070.768615510664 0.9936697685036946 1.0075171215190684 0.9605532040571912 1.2271542478863502 0.7492896762567399 0.8168776645015153 0.857641420748618 0.8968249897721903 0.6685617504997984 1.0 15.097981428778166 3.2188067878731776 24.99970178017802 0.8324085750635476 1.03819675574858 0.49954518340719034 0.10560600817969978 199.55876501474526 252553.45993555558 0.02930056669397921 0.035064675376636975 1655.0334961713784 -3.2188067878731776 0.20578818068503246 S(ph)LDLPSIGGSSVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDLPSIGGSSVGK 14 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 S(0.999)LDLPS(0.001)IGGSSVGK;S(0.996)LDLPS(0.004)IGGSSVGK 257.81 2.4482e-24 897590000.0 1825200.0 1356990.0 1260720.0 1029780.0 1081190.0 1544810.0 1489690.0 1490960.0 1833070.0 1573110.0 True False 1815373.3259987852 1402156.5918322224 1438218.4176253185 1160150.0424142792 1218873.1377847986 1438020.920791589 1417628.0035315666 1602223.0061414738 1381334.4603795698 1472712.772992769 1.232673036650371 0.9520910102401258 0.9765776762448031 0.7877639575683747 0.8276380568818379 0.9764435721361463 0.962596393219798 1.0879399130120402 0.9379523867186234 1.0 20.490044654562013 -3.1862791916434916 9.832197603717523 0.9999982533669729 0.9712970171959819 0.0 0.11776244694171814 0.0 0.0 0.0 0.02680805920349741 0.0006512096212127898 3.1862791916434916 -0.028701236170990962 S(ph)LDLPSIGGSSVGKEDSEDALSVQFDMK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDLPSIGGSSVGKEDSEDALSVQFDMK 28 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 S(0.981)LDLPS(0.012)IGGS(0.004)S(0.004)VGKEDSEDALSVQFDMK 60.527 0.022695 17313000.0 16874.0 23794.0 19135.0 18454.0 21426.0 20149.0 23871.0 22751.0 22122.0 21367.0 True False 16783.152258877653 24585.96890622327 21829.041675598433 20790.274507868748 24154.47409814841 18756.1470556442 22716.268533924514 24448.79514723714 16670.3295196129 20003.339766790952 0.8390175068035701 1.2290932010783662 1.0912698544389305 1.0393401677046072 1.207522062803186 0.9376507760360442 1.135623790765055 1.2222356582587484 0.8333773116871497 1.0 14.287953272686188 1.2306655365809607 24.999995727172156 0.9166886610211709 1.0983413868255139 0.22706927562863333 0.12499574617580303 256.0662858266196 810808.6023907203 0.10505574222405163 0.028154339575129667 17.008481288873913 -1.2306655365809607 0.181652725804343 S(ph)LDLSGLELLSEHLDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDLSGLELLSEHLDPK 17 0 Q9UFC0 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 S(1)LDLSGLELLSEHLDPK;S(1)LDLSGLELLSEHLDPK 240.21 1.6724e-20 44836000.0 52141.0 47549.0 51827.0 43055.0 23389.0 35467.0 48253.0 40338.0 64095.0 52124.0 True False 51860.27864940969 49131.63972102252 59123.79111164048 48505.75858547137 26367.450512535837 33015.2497703376 45918.81804563942 43348.22639221361 48299.64607899777 48797.401694398446 1.0627672140044053 1.0068495045846353 1.211617607878237 0.9940233885657778 0.5403453789950995 0.6765780271888429 0.941009489259559 0.8883306259560464 0.9897995467357473 1.0 15.574516710485074 3.4675696588051195 24.950903358588562 0.8313115186839124 1.0880161653051537 0.4000692101447505 0.1414092227910653 200.0616526991202 522603.7455367651 0.04127027027146234 0.05594767657095138 2934.740184816898 -3.4675696588051195 0.25670464662124126 S(ph)LDNFFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDNFFAK 8 0 Q9UKY7;Q9UKY7-2 Q9UKY7 CDV3 Protein CDV3 homolog 1 S(1)LDNFFAK;S(1)LDNFFAK 128.01 0.001208 50547000.0 196610.0 146340.0 113183.0 120191.0 94971.0 166794.0 138908.0 152758.0 277020.0 183588.0 True False 195551.47360542466 151210.83843560173 129118.1825957281 135407.16827653916 107064.99391278134 155263.9233708431 132188.48935990903 164157.57764940654 208752.13287782122 171871.2566624053 1.1377788084108371 0.8797913122414333 0.7512494241509267 0.7878406832301809 0.6229371681565209 0.903373410923603 0.769113416209888 0.9551194355426736 1.2145843169568398 1.0 17.3909687665599 1.4856530261813012 4.306774225434798 1.1059723523083254 0.8281956488554938 0.39041371323844243 0.1346701498426912 0.1801086835312591 6.98404185997577 0.08814545846718426 0.03487673329289506 30.595180955643297 -1.4856530261813012 -0.27777670345283156 S(ph)LDNNYSTPNER ddPTM_BT-474_Trastuzumab_2h_R1 3 SLDNNYSTPNER 12 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-27;O60716-29;O60716-25;O60716-26;H0YC95 O60716-13 CTNND1 Catenin delta-1 1 S(1)LDNNYSTPNER;S(1)LDNNYSTPNER;S(1)LDNNYSTPNER 196.48 6.9725e-06 495450000.0 425035.0 466823.0 447621.0 465762.0 436282.0 510165.0 483162.0 458434.0 640646.0 487999.0 True False 422746.6587858278 482360.92135453736 510642.1460085208 524727.4214443468 491839.92665398895 474898.4943492342 459789.6082019204 492644.67296068306 482767.37751658686 456854.4860230363 0.9253420327900892 1.055830545856159 1.1177347747062996 1.148565763274322 1.0765789582926162 1.039496182872741 1.006424632500459 1.0783404520095752 1.0567202299338787 1.0 18.80137519612617 0.9374819440257313 19.46478511783897 0.9999999990675817 1.0601574774413518 0.07509324023840513 0.05765369888903538 4074.223012201604 1268502.0703275437 0.05693404045352318 0.014233510069763497 8.659283212804553 -0.9374819440257313 0.06015747837377006 S(ph)LDTITLS(ph)GDER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDTITLSGDER 12 0 Q8N9U0;Q8N9U0-2;H0YJ73 Q8N9U0 TC2N Tandem C2 domains nuclear protein 2 S(1)LDT(0.006)IT(0.146)LS(0.848)GDER;S(1)LDTIT(0.442)LS(0.558)GDER 202.32 2.0195e-07 615700000.0 925070.0 924580.0 880120.0 753740.0 863670.0 924750.0 791010.0 765430.0 932460.0 816660.0 True False 920089.5259049385 955354.0863795882 1004033.2458598223 849163.4067172959 973653.255126846 860824.2091273486 752745.8243483566 822550.2733747837 702667.7273238524 764540.0596221971 1.2034549587363772 1.2495801552265073 1.313251324405385 1.110685301613778 1.2735150275944778 1.1259373505591468 0.9845734240797419 1.0758759636234794 0.9190724782571638 1.0 19.54423257092694 2.4530677576376663 3.3396294146247967 1.0087010610707237 1.228768761670814 0.7618540157472817 0.061638513143146764 0.11898304699419311 2.7885027336707204 0.021793900250199602 0.018528925888676155 283.83618286576007 -2.4530677576376663 0.2200677006000904 S(ph)LDTITLSGDER ddPTM_BT-474_Trastuzumab_2h_R1 3 SLDTITLSGDER 12 0 Q8N9U0;Q8N9U0-2;H0YJ73 Q8N9U0 TC2N Tandem C2 domains nuclear protein 1 S(1)LDTITLSGDER;S(1)LDTITLSGDER;S(0.998)LDT(0.002)ITLSGDER 209.67 5.5027e-08 754280000.0 381338.0 466460.0 410032.0 392050.0 386157.0 431210.0 383295.0 384910.0 410380.0 410580.0 True False 379284.918578635 481985.8391189757 467760.94153796637 441683.4898022076 435331.8050181412 401401.46765915566 364753.55652090797 413633.9387333765 309247.34781026805 384376.4328847775 0.9867538332984408 1.253942224037076 1.2169344983702073 1.149090974405834 1.1325663276256022 1.0442926082814283 0.9489488046480941 1.0761168046360672 0.8045429463230632 1.0 18.552160357888337 2.615753838144342 1.5951782121583384 0.9690942693818283 1.165082324774709 0.48816341485045445 0.09119662827846158 0.3313024132230337 1.6963443567217258 0.03816943963310615 0.0333353530021766 412.81344944361894 -2.615753838144342 0.19598805539288078 S(ph)LDTPQSLASLSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDTPQSLASLSSR 14 0 Q9ULE0;Q9ULE0-2 Q9ULE0 WWC3 Protein WWC3 1 S(1)LDTPQSLASLSSR 86.944 0.0074882 117070000.0 54947.0 52535.0 63496.0 46539.0 57407.0 56185.0 71872.0 56346.0 79253.0 73220.0 True False 54651.171457185614 54283.59571692187 72435.6848828742 52430.832628248834 64717.441172052895 52301.06319526373 68395.27678229735 60550.824639190534 59722.16008579163 68547.03691320417 0.7972798521748822 0.7919174651656643 1.0567296289494457 0.7648883888976552 0.9441318558233175 0.7629952445864077 0.9977860438942244 0.8833470761961801 0.8712580845969053 1.0 16.06480668343843 -4.999999999719879 0.09048648577348482 1.3759891982902164 0.7817899110492372 0.1573510594952886 0.09395288122785948 399.95448904917896 2.513719114085186 29.34507972765644 2.0350167034313555 1.000000000645002e-05 4.999999999719879 -0.5941992872409791 S(ph)LDYLNLDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLDYLNLDK 9 0 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 S(1)LDYLNLDK;S(1)LDYLNLDK;S(1)LDYLNLDK;S(1)LDYLNLDK 146.36 9.963e-05 543270000.0 1254490.0 753550.0 680540.0 705560.0 610410.0 863080.0 851390.0 769380.0 1285780.0 1012570.0 True False 1247735.9652269415 778631.4562194056 776354.1166402793 794883.8236573037 688142.0953164729 803417.3110717845 810205.0130743572 826795.0424324776 968916.747569292 947946.9156952082 1.3162508834282909 0.8213871930248019 0.8189848015602375 0.8385320005755273 0.7259289353895952 0.8475340736591477 0.8546944978244552 0.872195508781333 1.0221213145239307 1.0 19.85444674599962 4.741176097643427 24.87663973721776 0.8558130916868789 1.3162510591203993 0.7251296814454904 0.08276259461222818 111.87788648545771 1064040.8561095232 0.019284368631151245 0.1323234918416901 55103.108309108844 -4.741176097643427 0.4604379674335204 S(ph)LEDLRAPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SLEDLRAPK 9 1 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK 164.9 3.7492e-05 5071210000.0 7506470.0 7031420.0 6136130.0 6431110.0 6062010.0 8152100.0 8103330.0 7188400.0 12175800.0 8076150.0 True False 7466055.999567213 7265456.564116847 7000043.767801926 7245287.86660343 6833971.0411517145 7588564.514979249 7711340.970173284 7724834.9099555835 9175237.237361114 7560723.192660124 0.9874790822675781 0.9609473034497653 0.9258431487873408 0.9582797414984171 0.9038779581014242 1.0036823623362052 1.0199210807848882 1.0217058227253681 1.2135396315352935 1.0 22.850092805961538 1.8996922494649382 1.4214142906841598 1.0945540980640072 0.9505926871216593 0.4935613538215803 0.05721539576180113 0.3254220483221301 1.2252152026905863 0.0398436573257617 0.017445412076489548 79.37655558120689 -1.8996922494649382 -0.14396141094234782 S(ph)LEELLLDANQLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLEELLLDANQLR 13 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JPP5;Q14160-3;Q5T0G3;Q9BTT6-2;Q9BTT6 A0A0G2JNZ2 SCRIB;LRRC1 Protein scribble homolog;Leucine-rich repeat-containing protein 1 1 S(1)LEELLLDANQLR;S(1)LEELLLDANQLR;S(1)LEELLLDANQLR;S(1)LEELLLDANQLR;S(1)LEELLLDANQLR;S(1)LEELLLDANQLR 232.53 6.1788e-13 161865000.0 92983.0 98503.0 94504.0 98098.0 91522.0 128729.0 101989.6 87059.0 122242.0 103743.5 True False 92482.38985938247 101781.61280867907 107809.34175650663 110517.19674178534 103176.78420660595 119830.26722547118 97055.97340989269 93555.78465664454 92117.09705887902 97122.50101072105 0.9522241385564569 1.0479714973304046 1.1100346535001802 1.1379154736716026 1.0623365660159079 1.2338054104706744 0.9993150135124607 0.963276106803687 0.9484629833483231 1.0 16.567517952598013 2.0202460466749272 24.993288380152077 0.9701982895811223 1.0926767621845868 0.402592949502629 0.06805853551468491 227.58950705530953 280952.9993410825 0.025840068120216206 0.01908202067753081 104.77219599058084 -2.0202460466749272 0.12247847260346445 S(ph)LEGIFDDIVPDGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLEGIFDDIVPDGKR 15 1 Q13009 Q13009 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 1 S(1)LEGIFDDIVPDGKR;S(1)LEGIFDDIVPDGKR 214.54 1.5075e-12 119882000.0 123651.0 98744.0 85838.0 96418.0 83573.0 102834.0 90413.0 101043.0 166444.0 116372.0 True False 122985.27675491766 102030.63434799142 97923.24428272885 108624.50891403973 94215.5261740202 95725.32762519812 86039.37777879924 108583.34174595767 125426.10643533371 108945.03932891838 1.1288744995869897 0.9365330902304645 0.8988316024843188 0.9970578704927451 0.8647986797230116 0.8786570569421859 0.7897503026185144 0.9966799995191272 1.151278729237565 1.0 16.733240981138426 1.4751816813247103 7.78594187569316 1.0756928442480853 0.9234910833083931 0.2963963924690457 0.09119604040006504 0.13399926400131043 24.226315048740947 0.050909260683058725 0.02290750845946683 29.86631775326483 -1.4751816813247103 -0.15220176093969218 S(ph)LEGLNQELEEVFVK ddPTM_BT-474_Trastuzumab_2h_R1 6 SLEGLNQELEEVFVK 15 0 Q9C073;D6RJ87;D6RFX7;K7ENS5 Q9C073 FAM117A Protein FAM117A 1 S(1)LEGLNQELEEVFVK;S(1)LEGLNQELEEVFVK;S(1)LEGLNQELEEVFVK;S(1)LEGLNQELEEVFVK;S(1)LEGLNQELEEVFVK;S(1)LEGLNQELEEVFVK 328.83 8.698999999999997e-69 1204361000.0 518637.0 431730.0 406469.0 356464.0 375345.0 536181.0 491388.0 469817.0 608869.0 516190.0 True False 515844.7160179874 446099.87206370366 463696.3021081174 401592.3058509229 423142.96090588556 499116.0695043112 467617.6851555481 504877.1302223858 458821.3933766017 483246.3122675069 1.0674571184982686 0.9231314564419472 0.9595444193507526 0.8310302544608278 0.8756258457936242 1.0328398931020075 0.9676590866495689 1.0447614754748606 0.9494565850356981 1.0 18.882399197470985 2.7285960665465807 24.899960425412893 1.0026413023526863 0.9268929665546181 0.22212675318045672 0.06277096315806455 948.4060062341413 2369925.6523530656 0.020560552721565952 0.01960375178661935 535.2985494636956 -2.7285960665465807 -0.07574833579806828 S(ph)LEGLNQELEEVFVKEQGEEELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLEGLNQELEEVFVKEQGEEELLR 24 1 Q9C073;D6RJ87;D6RFX7;K7ENS5 Q9C073 FAM117A Protein FAM117A 1 S(1)LEGLNQELEEVFVKEQGEEELLR;S(1)LEGLNQELEEVFVKEQGEEELLR 120.42 0.0001016 48149000.0 16655.300000000003 17593.800000000003 18044.4 19216.0 20703.7 25540.0 26491.0 19781.5 36421.0 24288.0 True False 16565.62971537779 18179.39899732332 20584.894675263575 21648.743629739143 23340.193474555916 23774.479914693184 25209.52912455256 21257.695978421663 27445.532566396407 22737.91904599704 0.7285464286272991 0.799519030767407 0.9053112834829755 0.9520987204653785 1.0264876670261918 1.0455873233869493 1.1086999242787188 0.9349006800234885 1.2070380104211045 1.0 14.47281260566199 4.178471428661013 0.8296227892603737 1.0533783417558822 0.6631115290799143 0.7487911054274157 0.0669300402513614 0.5997243507525016 0.5397433010993739 0.02448180001276724 0.18552231262587363 15082.433830524904 -4.178471428661013 -0.39026681267596786 S(ph)LELSSLAGPGEDPLSADSLGKPTR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLELSSLAGPGEDPLSADSLGKPTR 25 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 S(1)LELSSLAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR;S(0.998)LELS(0.002)SLAGPGEDPLSADSLGKPTR 304.03 1.0393999999999999e-63 1360651000.0 814723.0 710233.0 686747.0 637595.0 637045.0 1006169.0 956145.0 882994.0 1184682.0 960111.0 True False 810336.6218922348 733872.6760600858 783435.0082880696 718314.4616259123 718168.9046884605 936614.90529706 909892.6135213951 948887.4960326815 892732.9950254976 898835.8939876185 0.9015401224101507 0.8164701487435201 0.871610728419421 0.7991608550913156 0.7989989157001259 1.0420310443342864 1.012301154869021 1.0556849168795572 0.9932102189032017 1.0 19.77769821248818 2.7346867980119383 24.99999999888923 1.0259636749153418 0.8361435554197405 0.8768913371745863 0.03426981541478572 101.76385619351456 656738.8800527394 0.010673799777430859 0.01041418078432789 542.8586945897646 -2.7346867980119383 -0.1898201194956013 S(ph)LENETLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLENETLNK 9 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(1)LENETLNK;S(1)LENETLNK 109.72 0.0026273000000000004 0.0 263750.0 179445.0 165563.0 140362.0 159466.0 220710.0 172310.0 184461.0 264360.0 182556.0 True False 262329.9993053801 185417.7183482068 188872.83130060617 158131.81480835978 179773.04987096688 205452.83719545556 163974.70701187762 198226.41649397882 199212.02024251258 170905.1197859453 1.5349452353091724 1.0849161135748198 1.1051326697360793 0.925260840672393 1.0518880305992497 1.2021455966490675 0.9594487702723717 1.1598623654004796 1.1656293298411482 1.0 17.38283609075547 4.739059418686759 6.204484831016663 1.0754013538254892 1.546010348676169 0.7209313278492546 0.08628406901350066 0.06529931748150553 13.332199431181769 0.020266254728779545 0.1292944272245418 54835.198343316144 -4.739059418686759 0.47060899485067975 S(ph)LENFFLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLENFFLR 8 0 Q6ZMT1;J3QKZ0 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR 124.67 0.0013583 122344000.0 87764.5 78885.8 72217.5 73601.2 67195.8 67021.7 72486.3 67784.0 81384.8 74132.9 True False 87291.98568355262 81511.46616552696 82385.09627423719 82919.10437349892 75752.7868292897 62388.64763111162 68979.86074444353 72842.38628017773 61328.606540448 69401.67485363118 1.2577792375710282 1.1744884592113296 1.18707648551693 1.1947709410237741 1.0915123732828218 0.8989501732154145 0.9939221335785159 1.049576777992794 0.8836761745273531 1.0 16.08268285897938 3.0320726639993234 3.375200027930316 0.9775184074478702 1.1999090173506788 0.8286979896023074 0.05084155025306493 0.10060609085990788 2.397419321491847 0.01589884645221337 0.018700413019704536 1076.6453375201745 -3.0320726639993234 0.22239060990280857 S(ph)LEPAENVHGAGGGAFPASQTPSKPASADGHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLEPAENVHGAGGGAFPASQTPSKPASADGHR 32 1 P12931;P12931-2 P12931 SRC Proto-oncogene tyrosine-protein kinase Src 1 S(1)LEPAENVHGAGGGAFPASQTPSKPASADGHR;S(1)LEPAENVHGAGGGAFPASQTPSKPASADGHR;S(1)LEPAENVHGAGGGAFPASQTPSKPASADGHR 231.5 4.4138e-37 2539940000.0 549603.0 574824.0 607321.0 496773.0 573300.0 745667.0 633901.0 606319.0 701988.0 709764.0 True False 546643.9985146337 593956.6693515548 692826.5178712375 559664.4108647169 646306.3567846764 694120.7954013118 603236.7868930193 651565.602605497 528992.4635572744 664466.2538604672 0.8226813556575663 0.8938853792810991 1.0426812706379 0.8422766507902176 0.9726699482926574 1.044629116028926 0.9078516529444314 0.980584941402187 0.7961163723272525 1.0 19.341836405880443 4.476555394852187 24.99694242932869 0.9490566297857642 0.8404823264426564 0.20518826531040202 0.07671631811919664 23.30859857922116 1029736.8871074198 0.01755257474913547 0.049055783094977386 29960.937238885726 -4.476555394852187 -0.1085743033431078 S(ph)LESCLLDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLESCLLDLR 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 S(1)LESCLLDLR;S(1)LESCLLDLR;S(1)LESCLLDLR;S(1)LESCLLDLR 172.17 3.9832e-06 227432000.0 162255.0 167603.0 161749.0 159323.0 161245.0 174396.0 176254.0 161277.0 235512.0 181772.0 True False 161381.43710822533 173181.56453684694 184521.85325248857 179493.27546424477 181778.59497600776 162340.41500402606 167727.92066433447 173312.30868801224 177473.22329911753 170171.15533716115 0.94834777837924 1.0176904787049323 1.084330966002401 1.0547808476037766 1.068210382751699 0.9539831511537898 0.9856424864250002 1.01845878841586 1.0429101391918552 1.0 17.376626989846674 2.7563979898816044 24.820133668096393 1.0015330154967914 1.037604643336136 0.15194189981623396 0.04036439469808743 1526.0535710620197 2123454.895536511 0.013062863758773715 0.013821099219230764 570.6870134797406 -2.7563979898816044 0.03607162783934448 S(ph)LESVLSLGPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLESVLSLGPR 11 0 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 1 S(1)LESVLSLGPR;S(1)LESVLSLGPR;S(1)LESVLSLGPR;S(0.986)LES(0.014)VLSLGPR;S(1)LESVLSLGPR 303.33 5.268999999999998e-36 586336000.0 157746.0 137472.0 135624.0 125992.0 139025.0 147931.0 137940.0 126636.0 160244.0 141077.0 True False 156896.71306322832 142047.67241642112 154718.68033505927 141942.57428174932 156729.0096842658 137704.8781621172 131267.31521802788 136086.2213645785 120754.01335958985 132073.34507790374 1.1879513839123441 1.0755211229989974 1.1714602991527028 1.0747253671664345 1.186681609311999 1.0426394370559153 0.9938971042234115 1.0303836953952197 0.9142951084366254 1.0 17.010979807000876 2.5252697657728147 4.106035964586747 0.9935993224801368 1.1336864473629673 0.7080795187127849 0.0468152230281546 0.12347248982045499 4.372003747837857 0.014983134838760124 0.013549053445390058 335.173570471425 -2.5252697657728147 0.14008712488283048 S(ph)LESVLSLGPRPTGGGS(ph)SPPEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 S(1)LESVLSLGPRPT(0.032)GGGS(0.525)S(0.442)PPEIR;S(0.972)LES(0.104)VLS(0.026)LGPRPT(0.197)GGGS(0.366)S(0.335)PPEIR;S(1)LES(0.015)VLSLGPRPT(0.005)GGGS(0.779)S(0.2)PPEIR;S(0.997)LES(0.005)VLS(0.007)LGPRPT(0.281)GGGS(0.43)S(0.279)PPEIR 156.52 9.5411e-09 1110202000.0 615351.0 614133.0 565820.0 646632.0 577853.0 683607.0 664358.0 623325.0 810466.0 685996.0 True False 612038.0185879231 634574.0456537624 645482.5378043952 728495.5448993266 651439.1543469314 636350.8571277859 632220.4654459805 669840.6766802161 610737.513988002 642215.1479692757 0.9530108726385939 0.9881019587599655 1.0050876872734178 1.1343481186995898 1.0143627978985275 0.9908686507005743 0.9844371741231907 1.0430160029676878 0.9509858431698349 1.0 19.292697168840913 4.451455831832881 2.679530729850801 1.0196962084573953 0.9556851340349622 0.14964239791075573 0.04591990598513745 0.5426514342459093 7.129915700460509 0.011800790253252496 0.05769630746385435 28278.46501709662 -4.451455831832881 -0.06401107442243303 S(ph)LESVLSLGPRPTGGGSS(ph)PPEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 S(0.999)LES(0.144)VLS(0.016)LGPRPT(0.023)GGGS(0.378)S(0.439)PPEIR 74.568 0.010382 300500000.0 158190.0 144960.0 148170.0 162790.0 130860.0 156120.0 158050.0 147330.0 187410.0 162520.0 True False 157338.32261656117 149784.90596982941 169031.04808327268 183399.19730876523 147524.24533201256 145327.79186694996 150404.51769036788 158324.512726581 141225.31666534027 152147.83445962757 1.0341147685431624 0.9844695226968534 1.1109658489955376 1.2054012990729106 0.9696112064687856 0.9551748954107703 0.9885419547675371 1.0405965572161489 0.9282111517848413 1.0 17.21511427436497 S(ph)LGDEGLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLGDEGLNR 9 0 Q01970;Q01970-2 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 1 S(1)LGDEGLNR;S(1)LGDEGLNR;S(1)LGDEGLNR;S(1)LGDEGLNR 116.75 0.0013257999999999998 2015290000.0 903255.0 945300.0 877880.0 1041940.0 873180.0 900155.0 893217.0 887350.0 1028720.0 1176550.0 True False 898391.9754410657 976763.7390540818 1001477.8733302504 1173849.497167485 984374.2972566617 837929.403586947 850008.6812896999 953568.5628719991 775205.7401417684 1101461.571704868 0.8156362405367567 0.886788757906664 0.9092263398532728 1.065719882855807 0.8936982665069505 0.7607432025885209 0.7717097928110525 0.8657302146238687 0.7037973544023753 1.0 20.07098773183649 2.939426311866038 7.865244855371837 0.8137597150426902 0.9240280544039328 0.20244627779077662 0.09354157196593701 0.4442604954273277 52.74007486370885 0.027875647013523394 0.029720020351222766 869.8138364480435 -2.939426311866038 0.11026833936124258 S(ph)LGDLGPFPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGDLGPFPR 10 0 Q5SZD1 Q5SZD1 C6orf141 Uncharacterized protein C6orf141 1 S(1)LGDLGPFPR;S(1)LGDLGPFPR 94.465 0.0084811 108430000.0 139607.0 127754.0 108479.0 113764.0 122351.0 141887.0 113837.0 115423.0 181183.0 141806.0 True False 138855.37142379588 132006.21466107608 123751.90028362899 128166.51073551433 137931.6746188067 132078.6856560718 108330.2694104294 124036.45036611798 136532.8773778151 132755.8196737755 1.0459456449066338 0.994353505446756 0.932176838557646 0.9654304500583206 1.0389877819123106 0.9948994023812466 0.8160114537850947 0.9343202480382113 1.0284511648025758 1.0 17.018415580893457 S(ph)LGGAVGSVASGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLGGAVGSVASGAR 14 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 S(1)LGGAVGSVASGAR;S(1)LGGAVGSVASGAR;S(1)LGGAVGSVASGAR;S(1)LGGAVGSVASGAR 200.63 1.9901e-08 2202230000.0 337105.0 314000.0 370789.0 380923.0 330917.0 445582.0 444254.0 321176.0 528675.0 534357.0 True False 335290.0641358861 324451.3001829915 422992.86824423616 429147.8127430854 373057.3184512725 414779.9651272053 422763.73680491414 345143.7840186825 398390.1301320562 500253.87877395534 0.6702398089498677 0.648573282386478 0.8455563988447747 0.8578600405755176 0.7457359838280078 0.829138928705094 0.845098368534478 0.6899372471925183 0.7963758943927604 1.0 18.93230092270727 -4.999999999999999 0.30736229073061705 2.9915936337591025 0.7582063085757714 0.4748630624913528 0.07341465345234431 275.2726288965321 2.5081029742875947 354.8191761031079 0.07466274332101347 1.0000000000000021e-05 4.999999999999999 -2.233387325183331 S(ph)LGSPLLHER ddPTM_BT-474_Trastuzumab_2h_R1 1 SLGSPLLHER 10 0 E7EV32;E7EMT6;E7ENY2;E7EVA2;E7EW82;H7C3L4;E7EQA9;Q92844 E7EV32 TANK TRAF family member-associated NF-kappa-B activator 1 S(0.572)LGS(0.428)PLLHER 94.122 0.0053588 111330000.0 71904.0 73956.0 70132.0 73232.0 69744.0 70934.0 61569.0 59796.0 83949.0 76915.0 True False 71516.87685328537 76417.58075265394 80005.97600172821 82503.16369135388 78625.48499492486 66030.49954067527 58590.672253579556 64258.281157935584 63260.89380896767 72006.21884975549 0.9932041703579637 1.061263623800369 1.1110981423516295 1.1457783092804912 1.0919263120728613 0.9170110664809542 0.8136890561609945 0.8923990480879664 0.8785476424052293 1.0 16.135833890496897 2.6872263504511045 4.577885023680465 0.8837243564636575 1.0853420997831895 0.7137472413063112 0.05684067727489744 0.10637345546399202 4.886988601223932 0.01864225666550743 0.017834991945219588 486.6607829096479 -2.6872263504511045 0.20161774331953197 S(ph)LGSVQAPSYGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGSVQAPSYGAR 13 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 1 S(0.999)LGS(0.001)VQAPSYGAR;S(0.985)LGS(0.015)VQAPSYGAR 221.73 1.9558e-11 731220000.0 387000.0 166971.0 179476.0 192186.0 159772.0 202861.0 181322.0 193388.0 364230.0 240556.0 True False 384916.434999742 172528.528798899 204744.66076664272 216516.7278947254 180118.0171571625 188837.69655342886 172550.76214269426 207819.59456436636 274470.39693195035 225203.51012964715 1.7091937633571959 0.7661005314685204 0.9091539499041267 0.9614269678571135 0.7998011090212163 0.8385202186445366 0.7661992570335991 0.9228079724189331 1.2187660697381706 1.0 17.780869788565298 4.744233239331871 24.99798865974158 0.8974573275205324 1.7091941113830236 0.7757789229672237 0.12888737026939645 274.84804151919417 1211159.2530194886 0.030250750935028208 0.26733552898603874 55492.36565862482 -4.744233239331871 0.8117367838624912 S(ph)LHS(ph)AHSLASR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 S(1)LHS(1)AHSLASR;S(1)LHS(1)AHSLASR;S(1)LHS(1)AHSLASR;S(1)LHS(1)AHSLASR 139.66 2.058e-05 8112320000.0 4090860.0 4736010.0 3666650.0 4903950.0 4617480.0 4751540.0 3997120.0 2274390.0 4733480.0 3524510.0 True False 4068835.2642972698 4893645.229871503 4182882.4489068706 5524789.567186678 5205488.708051822 4423077.223722053 3803764.0351187782 2444116.53091841 3566977.279382395 3299572.7543151737 1.2331400357746487 1.48311481341686 1.2677042636615623 1.6743954380037145 1.5776250731989758 1.3404999838047402 1.152805020026979 0.7407372750675069 1.0810421666615808 1.0 21.653847798299694 2.1297054615870614 2.78612457326133 0.9168106123307018 1.448592058333918 0.6832620512165851 0.1499783663131166 0.14088925842261418 2.1821614346194176 0.06718522656276023 0.04406285064904892 134.8048326450784 -2.1297054615870614 0.5317814460032162 S(ph)LHSAHSLASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 S(1)LHSAHSLASR 207.97 1.3623e-08 560160000.0 230820.0 316780.0 313060.0 360680.0 284950.0 267550.0 298680.0 96553.0 261680.0 125240.0 True False 229577.29076651277 327323.8308024462 357136.1268336999 406342.05101864645 321236.69346902805 249054.89824495517 284231.70733159786 103758.27514619967 197192.47033235274 117247.07597664166 1.958064103980298 2.7917440846683177 3.046013078440009 3.4656902752918053 2.739826906498085 2.124188566498432 2.4242114778898487 0.8849540534969992 1.6818540563999913 1.0 16.839192418272557 2.0359840720915994 1.431616833219963 1.1416395485786557 2.8232161400695426 0.6755642982302745 0.459583845801655 0.2352962941839756 0.9021847842105823 0.31274726190226 0.15292117577191194 108.63857792920331 -2.0359840720915994 1.681576591490887 S(ph)LLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR 40 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 S(1)LLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR;S(1)LLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR;S(1)LLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR;S(1)LLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR;S(1)LLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR 94.642 0.00033036 118900000.0 9310.8 11236.2 10602.0 10360.099999999999 13914.9 19384.8 12429.93 6306.000000000001 15032.5 10536.9 True False 9260.671687327127 11610.190124573666 12094.669445764017 11671.687597755019 15686.880034926024 18044.77440291089 11828.64679895623 6776.585741219177 11327.941800179955 9864.426020906049 0.9387947831633222 1.1769757409065418 1.2260895281825146 1.183210008673467 1.5902476232960976 1.829277685763766 1.1991216492360868 0.6869721286223146 1.1483629940730684 1.0 13.268019392287707 1.9871786678359036 24.578124444964786 0.9185097747624453 1.3349461575905301 0.3078891571586214 0.2528615288290167 568.3250630908205 1089462.1767400675 0.10799912980311467 0.0734763959684133 97.09093151434338 -1.9871786678359036 0.4164363828280848 S(ph)LLGLSNSEPNGSVETK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLGLSNSEPNGSVETK 17 0 Q13033-2;Q13033;G3V340;G3V3G7 Q13033-2 STRN3 Striatin-3 1 S(0.999)LLGLS(0.001)NSEPNGSVETK 188.04 7.984099999999999e-18 0.0 44019.0 36278.0 37843.0 33084.0 31014.0 39747.0 37119.0 39708.0 58318.0 38058.0 True False 43782.00659497066 37485.4912994859 43170.965462747394 37272.43100782107 34963.44906562001 36999.38344437392 35323.41216164986 42671.212593138414 43946.31032116377 35629.10585690691 1.2288269812553623 1.0521030600665249 1.2116769260539402 1.0461231095024968 0.9813170503363093 1.0384594997407541 0.9914201131938374 1.1976503919159216 1.2334384841893113 1.0 15.120768657800548 7.283856012651894 1.3240933055294353 1.0855725925295627 145.49284678529813 0.17478845709040336 0.09139939275445569 3381.898887118925 7.278629771782524 0.025986916529285364 1482257.7552827103 19224542.467580043 -7.283856012651894 144.40727419276857 S(ph)LPAFPTSSLLTQSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLPAFPTSSLLTQSQK 16 0 Q99698 Q99698 LYST Lysosomal-trafficking regulator 1 S(0.983)LPAFPT(0.014)S(0.001)S(0.001)LLTQSQK;S(0.999)LPAFPTSSLLTQSQK 136.01 2.0705e-05 129132000.0 179692.0 126640.0 129939.0 136588.0 112935.0 159403.0 152978.0 159039.0 179623.0 161690.0 True False 178724.55823765812 130855.13584450344 148233.2817499652 153880.02679531675 127316.6028318114 148383.84580430048 145577.86970728915 170907.29776367827 135357.31847488604 151370.80577022664 1.1807069225023028 0.8644674590894035 0.9792725948422045 1.016576651041278 0.8410908707526581 0.9802672652052853 0.961730163002958 1.12906380390884 0.8942101998211711 1.0 17.207727460263435 S(ph)LPAGDALYLSFNPPQPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLPAGDALYLSFNPPQPSR 19 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(0.994)LPAGDALY(0.006)LSFNPPQPSR;S(1)LPAGDALYLSFNPPQPSR;S(1)LPAGDALYLSFNPPQPSR;S(1)LPAGDALYLSFNPPQPSR 228.94 9.6356e-20 309972000.0 142736.0 125182.0 113755.0 144731.0 118511.0 148984.0 143682.0 126969.0 171698.0 154286.0 True False 141967.52523546037 129348.60719588306 129770.7152238149 163053.92976039607 133602.67338026993 138685.08675061277 136731.55274145794 136444.0715155181 129385.32853532674 144439.33538910974 0.9828868628688268 0.8955220324673103 0.8984444221805745 1.1288748270762938 0.9249743016357242 0.9601614849376355 0.9466365403379381 0.9446462152982569 0.895776266117339 1.0 17.140104161556845 -0.03935446061367989 8.023365868226454 0.9999999988934947 0.9534254521452786 0.044655136275712715 0.06505967464751797 8316639.015692235 1036552.3184942976 0.06115341263381488 0.014831881143259354 0.9133674688147262 0.03935446061367989 -0.04657454674821604 S(ph)LPAPQDNDFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPAPQDNDFLSR 13 0 O43353-2;O43353 O43353-2 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 1 S(1)LPAPQDNDFLSR 78.814 0.013263 0.0 44034.0 48031.0 35175.0 39358.0 36704.0 45065.0 46661.0 38331.0 54588.0 37509.0 True False 43796.92583663732 49629.68279964736 40127.33425341911 44340.71876453337 41378.036838347725 41949.76262159935 44403.82916767003 41191.45386087409 41135.51884172449 35115.14350692946 1.2472375580066941 1.4133413064324702 1.1427358753496357 1.2627235527539102 1.17835306098585 1.1946345203835256 1.2645207945371941 1.1730395990762663 1.171446696027513 1.0 15.099805710671333 -4.999999999763825 0.10158026035643533 0.2551494097879519 1.3834639083644036 0.5710472192094624 0.06579868113984498 126.96347560468331 0.8749809925238775 19.88521211771917 1.0068955986730355 1.0000000005438122e-05 4.999999999763825 1.1283144985764517 S(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPEEDVAEIQHAEEFLIKPESK 23 1 O60832;O60832-2;C9IYT0;H7C0M1;H7C2Q9 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 S(1)LPEEDVAEIQHAEEFLIKPESK 184.75 1.9591e-17 15741000.0 69145.0 55463.0 51522.0 51474.0 48716.0 66087.0 56182.0 55451.0 89949.0 73214.0 True False 68772.73100273176 57309.05242690847 58775.849762747974 57990.60312225189 54919.69383764574 61518.5612420645 53464.26202391802 59589.035194472606 67782.27420484861 68541.41983834113 1.0033747647033895 0.8361229248252394 0.8575230846016056 0.8460665574046474 0.801262856345506 0.8975384721699602 0.7800285163338686 0.8693872308892457 0.9889242791397814 1.0 16.064688457203403 1.2442849326835954 5.153942964413816 0.9983055178623219 0.8551408892211724 0.46250711065458594 0.05727787964354533 0.13448893046685736 9.778727188191446 0.04437966364835269 0.01345384342725186 17.550315683858553 -1.2442849326835954 -0.14316462864114954 S(ph)LPGS(ph)PEFLHQEACPFVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLPGSPEFLHQEACPFVGR 19 0 Q96S53-3;Q96S53-2;Q96S53 Q96S53-3 TESK2 Dual specificity testis-specific protein kinase 2 2 S(1)LPGS(1)PEFLHQEACPFVGR;S(1)LPGS(1)PEFLHQEACPFVGR 137.62 1.8567e-06 134242000.0 150599.0 135989.0 126198.0 138487.0 130466.0 154433.0 154402.0 136039.0 164385.0 139428.0 True False 149788.19171712187 140515.31165791347 143965.58146732027 156019.44000060798 147080.07176743328 143757.41020617896 146932.98538708105 146190.92097204478 123874.51939614714 130529.58566968374 1.1475420759870767 1.0765016293968745 1.1029344859152275 1.1952802822451953 1.1267949025719883 1.1013396653994547 1.1256680593387274 1.1199830308355792 0.9490148824161764 1.0 16.994017317717184 1.24545982076384 24.994590624278562 0.9745074239113567 1.123733141810502 0.7795706642487418 0.03190243372035346 61.43544866633938 222575.6414176038 0.02240617081685613 0.0077824086296749495 17.597858477285623 -1.24545982076384 0.1492257178991454 S(ph)LPGSPEFLHQEACPFVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLPGSPEFLHQEACPFVGR 19 0 Q96S53-3;Q96S53-2;Q96S53 Q96S53-3 TESK2 Dual specificity testis-specific protein kinase 2 1 S(0.99)LPGS(0.01)PEFLHQEACPFVGR;S(1)LPGSPEFLHQEACPFVGR;S(0.5)LPGS(0.5)PEFLHQEACPFVGR;S(0.992)LPGS(0.008)PEFLHQEACPFVGR 349.33 6.740899999999998e-91 2685840000.0 178880.0 190030.0 203102.0 208859.0 170839.0 216985.0 205167.0 190455.0 208878.0 217171.0 True False 177916.92995543632 196355.03367443907 231696.99620576898 235300.5279852045 192594.33400791456 201985.33767774852 195242.28839594853 204667.71921089385 157402.81572180215 203310.96085055268 0.8750975806278212 0.9657867576493985 1.139618814629881 1.1573430522428465 0.9472894781579653 0.9934798243672727 0.9603136376865822 1.00667331635572 0.7741973923260531 1.0 17.63332846993658 1.355968581000882 13.250773104549433 0.8871093325796114 1.0092758821324588 0.19796551447359634 0.09528456492080208 0.7837112177443457 86.10546791027564 0.06465236736780637 0.023639345919387166 22.69700644634809 -1.355968581000882 0.12216654955284734 S(ph)LPLSPELESSP ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPLSPELESSP 12 0 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 S(0.999)LPLS(0.001)PELESSP 126.19 0.00030611 33318000.0 60995.0 62041.0 68002.0 62393.0 73398.0 89268.0 90990.0 69299.0 91699.0 91747.0 True False 60666.609697181564 64105.99718042351 77576.09051602014 70291.94740270167 82744.80023597013 83097.11327426902 86588.46608444511 74470.44327319172 69101.01015364728 85891.62791144152 0.7063157512829051 0.7463590892295107 0.9031857050841426 0.8183794988165333 0.9633628125116463 0.9674646446327251 1.008112992965066 0.8670279640056933 0.8045139186894188 1.0 16.3902298943907 4.3709473299475885 1.1097953882308482 0.9253497011661092 0.6538966206059935 0.5674097461006351 0.06695025450943974 0.7288403093736286 1.1372010346985364 0.02115703784796111 0.2010545287093019 23493.4788105531 -4.3709473299475885 -0.27145308056011563 S(ph)LPNLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLPNLSR 7 0 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 S(1)LPNLSR;S(1)LPNLSR;S(1)LPNLSR 91.636 0.017054 500270000.0 703000.0 823490.0 811960.0 799040.0 646406.0 772060.0 839490.0 693450.0 942240.0 782060.0 True False 699215.126110643 850899.3668397836 926276.9103171629 900198.3820725838 728721.9725514664 718689.3094337521 798880.6615367711 745198.7602677502 710037.5773691381 732148.2612447484 0.9550184889080872 1.1621954348332983 1.2651493684385322 1.2295301781392312 0.9953202255954869 0.9816171771164022 1.0911460203136574 1.0178249402666262 0.9698002644464125 1.0 19.48177630068379 3.226672861378972 24.944070721539212 1.0150010896884094 1.161644660465588 0.420538738227321 0.08221457546681972 212.6642242106278 446232.27983073215 0.024683866927435346 0.029722594223443283 1685.2830832081404 -3.226672861378972 0.1466435707771785 S(ph)LPSHMEEAPNVFQLYQR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLPSHMEEAPNVFQLYQR 18 0 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 S(1)LPSHMEEAPNVFQLYQR;S(0.5)LPS(0.5)HMEEAPNVFQLYQR;S(1)LPSHMEEAPNVFQLYQR;S(1)LPSHMEEAPNVFQLYQR;S(1)LPSHMEEAPNVFQLYQR 330.15 4.574499999999999e-75 1209339000.0 885012.0 723349.0 723626.0 747526.0 686053.0 794544.0 731450.0 669534.0 775000.0 800940.0 True False 880247.193726077 747425.234191296 825506.2509300548 842162.7149544327 773417.7829952864 739619.0434353951 696066.9690896523 719498.026904764 584011.6344679497 749823.3234807668 1.1739394683535147 0.9968017942168849 1.1009343469044934 1.1231481984916336 1.0314666919201596 0.986391087439102 0.9283079724146599 0.9595567440670832 0.7788656556545881 1.0 19.5161911762254 2.598934618429073 1.3099638389105497 0.909936566174792 1.0926543250889875 0.5919885981565642 0.06755113198377957 0.3048807666485319 1.0649938556293925 0.031640837723320825 0.026153350914512 397.1317581207817 -2.598934618429073 0.1827177589141955 S(ph)LPSHMEEAPNVFQLYQRPTSASR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLPSHMEEAPNVFQLYQRPTSASR 24 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 S(0.994)LPS(0.006)HMEEAPNVFQLYQRPTSASR;S(1)LPSHMEEAPNVFQLYQRPTSASR 232.8 4.067e-35 775940000.0 43906.0 51782.0 50313.0 54802.0 44520.0 48798.0 54659.0 54595.0 75975.0 62400.0 True False 43669.61497441518 53505.532567119975 57396.633071564356 61739.927581024385 50189.35810928624 45424.70911813615 52014.93535234295 58669.15612779269 57251.97926284196 58417.578576672204 0.7475423671848955 0.9159149329836525 0.9825233169538536 1.056872418975594 0.8591482107293005 0.777586305781519 0.8903986885398566 1.0043065384983443 0.9800471135190855 1.0 15.834114938883495 1.7402600001523125 6.923857742751458 0.9932090926118232 0.8953989745927198 0.24158376434932893 0.08459339054796412 0.22649622265956873 32.048138457829836 0.04499044684155854 0.023738994601332986 54.986996735241 -1.7402600001523125 -0.09781011801910344 S(ph)LPSS(ph)PERR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLPSSPERR 9 1 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 2 S(1)LPS(0.054)S(0.946)PERR;S(1)LPS(0.073)S(0.927)PERR 110.8 0.0077971 1046380000.0 708120.0 583810.0 606530.0 611460.0 619780.0 675870.0 657950.0 583980.0 678780.0 679570.0 True False 704307.5605995278 603241.7629294018 691924.1519467314 688870.773305593 698705.3092761325 629148.6977268471 626122.444886918 627559.5529903537 511503.76418600726 636199.260790852 1.10705498105108 0.9481962650813502 1.0875903110711074 1.082790904926965 1.0982491686764615 0.9889176811440484 0.9841609122723474 0.9864198084893113 0.8039993060510048 1.0 19.27911917002692 2.005820900151291 1.3028172138379523 0.9183313764338422 1.0575044765487023 0.43482753996474743 0.06576870702813563 0.42669609424400673 1.3455628068620713 0.04592039312931014 0.021576462303721625 101.34933423467038 -2.005820900151291 0.13917310011486006 S(ph)LPTTVPES(ph)PNYR ddPTM_BT-474_Trastuzumab_2h_R1 7 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(0.999)LPTTVPES(0.995)PNY(0.005)R 349.2 9.779999999999998e-76 13500046000.0 3184581.0 2800930.0 2398083.0 3145624.0 2814595.0 2897128.0 2838842.0 2933892.0 3874945.0 3300778.0 True False 3167435.569736214 2894157.2618520586 2735712.241888898 3543859.6758719007 3173016.9898384227 2696856.3604657496 2701516.3670304273 3152833.9190417067 2920016.726352793 3090119.5221017795 1.025020406842337 0.936584245739325 0.8853095235708464 1.1468357940606468 1.0268266218001365 0.8727352910386627 0.8742433254468295 1.0202951363179866 0.944952680783917 1.0 21.559231210239812 2.777864618813014 24.99629194217455 0.9443767116086764 1.0016921867232986 0.1383124075256369 0.0767695663483893 1282.401368727221 815570.8187970116 0.024812249401683816 0.026317006861004993 599.6041344996862 -2.777864618813014 0.057315475114622205 S(ph)LPTTVPESPNYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 S(0.982)LPT(0.018)TVPESPNYR;S(0.996)LPT(0.004)TVPESPNYR;S(0.979)LPT(0.02)T(0.001)VPESPNYR;S(0.994)LPT(0.006)TVPESPNYR 193.28 2.097e-06 2951390000.0 548779.0 595147.0 491673.0 644003.0 512130.0 559433.0 543681.0 558072.0 634452.0 624805.0 True False 545824.4348390789 614956.1081210416 560896.2847016724 725533.713768885 577346.7198676715 520760.7134736319 517381.0729668886 599718.1664721962 478099.80582123826 584929.4099775268 0.9331458215787949 1.0513338834247854 0.9589127767113339 1.2403782429007293 0.9870365723102441 0.8902966829683598 0.884518822513586 1.025282976445376 0.8173632538661495 1.0 19.15790300337184 3.001829086803302 24.99428263353468 0.9309851939421359 1.04931084082945 0.2718914344450507 0.09410457249012291 81.46603408773215 1113193.3912410773 0.02673452639480045 0.031748496873025285 1004.2205093762745 -3.001829086803302 0.11832564688731417 S(ph)LPVSICR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLPVSICR 8 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 S(0.998)LPVS(0.002)ICR;S(0.999)LPVS(0.001)ICR;S(1)LPVSICR 89.08 0.014853 640710000.0 355840.0 437056.0 427826.0 455632.0 414009.0 508660.0 475861.0 343700.0 541830.0 449370.0 True False 353924.19697754073 451603.1447540684 488060.18206974544 513314.96448299807 466730.5921264039 473497.53145684494 452841.78546444786 369348.6392732369 408303.2566500254 420690.8218749876 0.8412928891581875 1.07347990797923 1.1601398383128436 1.2201715316611652 1.1094384946318068 1.1255237976110384 1.0764242096990988 0.8779574453920282 0.9705542298979764 1.0 18.68240081790629 1.8448493648577649 6.391671821641929 0.9405880161134655 1.0977342399245162 0.29032000072502706 0.09727793035842211 0.27389515049019864 13.798567589706218 0.04448878142298261 0.026878802648950092 69.95992977353112 -1.8448493648577649 0.1571462238110507 S(ph)LPVSVPVWGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLPVSVPVWGFK 12 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK 240.6 3.4087e-16 1476670000.0 7283200.0 1074750.0 846610.0 2284340.0 826400.0 1209970.0 1056900.0 1952160.0 3747700.0 2089360.0 True False 7243988.060439584 1110522.4040499046 965805.3291339624 2573537.2097813417 931637.1415434448 1126327.62186301 1005773.7092499187 2097840.0920676203 2824129.551607145 1956015.2560089077 3.703441493202032 0.5677473121123996 0.49376165455100324 1.3157040579695876 0.4762933922327251 0.5758276262942812 0.5141952273430215 1.0725070193716661 1.4438177529195528 1.0 20.89948619200827 4.741537480358485 24.98496841850044 0.8145208303298667 3.7034425532228346 0.8636798481599909 0.3425653696647174 94.48477704903688 792975.8268214221 0.08256163592854014 0.5828825924222008 55148.97948430079 -4.741537480358485 2.888921722892968 S(ph)LQEEHVAVAQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQEEHVAVAQLR 13 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR 186.97 4.7377e-06 1115300000.0 1045620.0 729220.0 704000.0 891440.0 665720.0 761220.0 644470.0 632270.0 962520.0 853170.0 True False 1039990.4980993029 753491.646877201 803117.080722305 1004296.2125985984 750495.4959684197 708598.6531191365 613294.5239855192 679453.1980020062 725319.8431072156 798719.9601644139 1.3020715018630864 0.943374003977686 1.0055052093063832 1.2573821397825933 0.939622813249756 0.8871678291015461 0.7678467480132517 0.850677624060056 0.9081028136042961 1.0 19.60733024179623 3.0464688305337564 7.386197088667638 0.8670693552713735 1.105481256755434 0.5076890432816974 0.11310094171039234 0.17780418078569138 23.257794902310177 0.0322586147436817 0.03850666338982654 1112.9325143811507 -3.0464688305337564 0.23841190148406044 S(ph)LQLPASPAPDPSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQLPASPAPDPSPR 15 0 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 S(1)LQLPASPAPDPSPR;S(1)LQLPASPAPDPSPR 246.03 4.0244e-18 325740000.0 418800.0 305770.0 218000.0 240832.0 215463.0 307930.0 280910.0 271330.0 328900.0 327810.0 True False 416545.2273330546 315947.36960813176 248692.50511003187 271321.3065069388 242900.93590074443 286643.5238892511 267321.3101195896 291578.0223858227 247847.00203420492 306888.8851477389 1.3573161085078926 1.02951714740673 0.810366608716732 0.8841027474042354 0.7914947319900812 0.9340303209458318 0.8710687257079998 0.9501094255839686 0.807611529869807 1.0 18.227356869890553 4.661045036002244 2.7272395105677605 0.8816788590310136 1.4080088447818788 0.8321117246610809 0.06479082847221146 0.12743562026810626 1.409640163080226 0.015079092483439353 0.13805526026611628 45818.9398137639 -4.661045036002244 0.5263299857508652 S(ph)LQQLAEER ddPTM_BT-474_Trastuzumab_2h_R1 4 SLQQLAEER 9 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 S(1)LQQLAEER;S(1)LQQLAEER;S(1)LQQLAEER;S(1)LQQLAEER 139.78 0.00011609 2630130000.0 966290.0 863330.0 821650.0 826560.0 787650.0 909690.0 863910.0 799320.0 1127430.0 895300.0 True False 961087.6020049107 892065.4171559945 937331.1780901719 931202.4112508931 887952.558732689 846805.2714799223 822119.3728433123 858969.3172647166 849589.9832880017 838161.1874951058 1.146662021987892 1.0643124860290711 1.1183185192474032 1.111006361477852 1.059405484267755 1.0103131523074338 0.9808607044908207 1.024825928568462 1.013635558366824 1.0 19.676868190960487 2.9671368223447208 2.552979318126193 1.0065133846272472 1.1075539649721882 0.8365483486329237 0.02167823251079592 0.10854511914015906 1.4132317220498523 0.006820605297492042 0.007779167065126551 927.1218625660554 -2.9671368223447208 0.10104058034494101 S(ph)LQTLPTDSSTFDTDTFCPPRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLQTLPTDSSTFDTDTFCPPRPK 23 1 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 S(0.997)LQT(0.002)LPTDSSTFDTDTFCPPRPK 94.152 0.0026285 674460000.0 245300.0 167450.0 147150.0 151160.0 141650.0 234150.0 217430.0 210370.0 354140.0 224780.0 True False 243979.33205539203 173023.4720243374 167867.44094927135 170296.84050121586 159688.28787467192 217963.7616298123 206912.08023673948 226068.8776372151 266866.94223287754 210434.3479561598 1.159408311547223 0.8222206769228744 0.7977188257510295 0.8092635168888596 0.7588508692884115 1.0357803454938883 0.9832619163476387 1.0742964721914716 1.2681719729921395 1.0 17.683010680880827 2.167603693326539 1.4685405977157708 1.1209193202866397 0.8653445901497153 0.38293716115920184 0.12739075878058073 0.4068887280099074 1.6920761448141781 0.07717352554663606 0.04272916772550138 147.09695861613287 -2.167603693326539 -0.25557473013692433 S(ph)LQTLPTDSSTFDTDTFCPPRPKPVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 S(0.98)LQT(0.02)LPTDSSTFDTDTFCPPRPKPVAR;S(0.997)LQT(0.003)LPTDSSTFDTDTFCPPRPKPVAR 139.36 1.2332e-07 326420000.0 269250.0 240104.0 242870.0 279370.0 246320.0 298440.0 259780.0 267290.0 438460.0 326140.0 True False 267800.3879164872 248095.71649406676 277063.98493611685 314738.2133555483 277687.3919469762 277809.545252194 247213.4489440285 287236.5370711185 330407.4080629903 305325.46597749786 0.8770981059805334 0.8125614930277422 0.9074381792854977 1.0308285695983974 0.9094799579129814 0.9098800336316141 0.8096718960292943 0.940755256531034 1.0821482152010895 1.0 18.219988398430413 7.999999999988798 0.0693512627490299 1.1180741082260721 0.46262161095798665 0.2465925075086871 0.07298080726200569 420.7924092941755 2.1549330208471407 3.5867331478447477 26.97220046156843 99999999.99742071 -7.999999999988798 -0.6554524972680855 S(ph)LQTLPTDSSTFDTGETSYLLPEPGSHPCWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLQTLPTDSSTFDTGETSYLLPEPGSHPCWR 31 0 Q9NQG6-2 Q9NQG6-2 MIEF1 Mitochondrial dynamics protein MID51 1 S(0.993)LQT(0.007)LPTDSSTFDTGETSYLLPEPGSHPCWR 138.78 1.8242e-07 77115000.0 23616.0 21608.0 16890.0 22458.0 18262.0 24965.0 17530.0 19839.0 26935.0 22784.0 True False 23488.85407998426 22327.209217688163 19267.965189488234 25301.180497329395 20587.557452645677 23239.22831128876 16682.00692889684 21319.486920400763 20297.230160508698 21329.905613636234 1.1012169723323955 1.0467561189494599 0.9033310103899476 1.1861834250759329 0.9651968379777558 1.089513884038563 0.7820947373640517 0.9995115452724361 0.9515855591753136 1.0 14.380589961212921 S(ph)LS(ph)GSSPCPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.999)LS(0.968)GS(0.029)S(0.003)PCPK;S(1)LS(0.998)GS(0.001)S(0.001)PCPK;S(1)LS(0.976)GS(0.022)S(0.002)PCPK 122.86 0.00069781 3810890000.0 11314200.0 9408400.0 7550800.0 7669200.0 8348800.0 11627400.0 11146100.0 10093400.0 15238100.0 10442700.0 True False 11253285.604325794 9721552.906502107 8613887.007269856 8640119.933659207 9411970.192785464 10823625.205955492 10606920.5607631 10846620.761246689 11482874.435078803 9776237.94555472 1.1510854857458426 0.9944063310081892 0.8811044754886118 0.8837878109940942 0.962739475573537 1.107136023717285 1.0849695578027634 1.1094882123014072 1.1745698600042866 1.0 23.220847968913525 2.739277629840523 24.41025066735469 1.1016481058913055 0.9654816253774776 0.35441430546747577 0.08068829701185701 49.47342755152805 1684323.075242391 0.02622579933967588 0.02633119801526672 548.6275719789295 -2.739277629840523 -0.13616648051382785 S(ph)LS(ph)PGVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 S(1)LS(1)PGVSR;S(1)LS(0.999)PGVS(0.001)R;S(1)LS(1)PGVSR 116.55 0.0032902 2215430000.0 2162380.0 2237800.0 1705360.0 1782080.0 1989710.0 2367470.0 2098180.0 2012460.0 2485670.0 2217050.0 True False 2150737.9863430057 2312283.8202213366 1945459.8647451547 2007691.1452792198 2243087.774564865 2203812.3713249294 1996683.0175740325 2162639.984264818 1873109.9347715483 2075555.9708879993 1.0362225912042453 1.1140551508384793 0.9373198757501179 0.967302820757108 1.0807165916153008 1.0617937565817883 0.9619991200332594 1.0419569573638436 0.9024617794191129 1.0 20.985066406509624 1.2542934659839096 24.99972676212356 0.9512308622191521 1.024100721332652 0.21161853288159127 0.057056194986501135 321.1555505183413 510325.0754665339 0.038204712039781416 0.013847389000510121 17.95946792744193 -1.2542934659839096 0.07286985911349997 S(ph)LS(ph)PKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSPKPR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR 125.71 0.0022889 4906500000.0 4951400.0 3600590.0 2380000.0 3030500.0 3094190.0 4307070.0 4171410.0 4028650.0 6342100.0 3851940.0 True False 4924742.21255225 3720433.461547384 2715083.312669152 3414160.989275838 3488216.7557990155 4009332.3886522152 3969622.961966319 4329288.320070191 4779174.434786044 3606105.891388249 1.3656676650325328 1.0317038860206964 0.7529128080107269 0.9467722502074064 0.9673084653806853 1.1118177084668845 1.100805988932878 1.2005438693325607 1.32530063695556 1.0 21.78201033069168 2.3274255309847476 1.8111643940434772 1.1868701918256814 0.997849488222939 0.14380428111976917 0.16131214403148716 0.588361651038808 3.922947754625923 0.07949948998100809 0.05502439888434087 212.53258816967818 -2.3274255309847476 -0.18902070360274248 S(ph)LS(ph)PLGGRDDS(ph)PVSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSPLGGRDDSPVSHR 16 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 S(1)LS(1)PLGGRDDS(0.995)PVS(0.005)HR;S(1)LS(1)PLGGRDDS(0.999)PVS(0.001)HR 178.11 4.779199999999999e-09 962000000.0 621830.0 703280.0 462230.0 663010.0 691550.0 826230.0 758750.0 726360.0 993330.0 765900.0 True False 618482.1363718079 726688.2496582629 527307.9662248162 746946.9980200529 779614.7933620142 769114.664836216 722046.3637935235 780564.6715813454 748537.131440064 717019.6062800207 0.862573534886394 1.0134844895363522 0.7354163841635376 1.0417385960968333 1.0872991289690732 1.072654998691696 1.0070106277003807 1.0886238880286743 1.0439562947567917 1.0 19.451653043149523 3.5761652927759138 10.706757679847552 1.0555116272057263 0.8849091433028315 0.5821966737422317 0.06881007129200953 0.3513035002465291 36.22288876751856 0.016930241540582657 0.02623190902425664 3768.471999941684 -3.5761652927759138 -0.17060248390289479 S(ph)LS(ph)PSHLTEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPSHLTEDR 11 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(0.989)LS(0.696)PS(0.312)HLT(0.003)EDR 89.43299999999998 0.017889 200380000.0 375240.0 429330.0 393520.0 405790.0 416290.0 435520.0 499880.0 473790.0 638720.0 517520.0 True False 373219.7495330833 443619.9895145347 448924.19546284253 457162.9723934143 469302.06395585736 405413.52750380425 475698.8946729585 509146.61565687193 481316.0144095084 484491.4305288364 0.7703330255515627 0.9156405285235091 0.9265885156582209 0.9435935159769652 0.9686488436825407 0.836781626996547 0.9818520301870343 1.0508887950837926 0.9934458776373776 1.0 18.88611162254799 7.1449405348884945 0.296457081199074 1.0100701324657488 9.071274802250453e-18 0.5604569482643298 0.05200795811185737 26.310322704141583 0.5943349227404602 0.058457052622910156 12.736616202331797 13961771.78530536 -7.1449405348884945 -1.0100701324657488 S(ph)LS(ph)PVAAPPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPVAAPPLR 11 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 2 S(1)LS(1)PVAAPPLR 77.185 0.048697 31265000.0 104020.0 111180.0 100190.0 79875.0 75508.0 102990.0 117400.0 88636.0 116700.0 120570.0 True False 103459.96787770845 114880.5590902707 114295.8811329087 89987.16681023179 85123.49622902041 95870.54371238242 111720.9134884478 95250.46840448813 87940.8486998837 112875.11937482962 0.9165878933349709 1.017766888988011 1.0125870233045875 0.7972276557370208 0.7541387039099989 0.8493505410525475 0.9897744880114013 0.8438570779109035 0.7790986108094775 1.0 16.784367987913786 3.7471706203332515 24.71418306106005 0.8553128804793128 0.9858592384632135 0.32781955660912854 0.08070365087724131 617.8075865194053 1773350.5889585004 0.021123849732318685 0.03732692900120051 5586.896428178792 -3.7471706203332515 0.1305463579839008 S(ph)LS(ph)RS(ph)PLPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSRSPLPSR 10 1 Q9NYV4;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 3 S(1)LS(0.986)RS(0.923)PLPS(0.091)R;S(1)LS(0.991)RS(0.65)PLPS(0.359)R 88.075 0.010144 1040540000.0 779090.0 845730.0 540560.0 716310.0 718570.0 957150.0 757590.0 819470.0 996280.0 764390.0 True False 774895.4660050359 873879.6117954183 616666.1493682511 806994.7725550807 810075.6302019279 890984.473388746 720942.4774251551 880623.0125843453 750760.143468039 715605.9757727962 1.0828521452300786 1.2211742793954445 0.8617397985005671 1.1277082638718774 1.132013506912253 1.2450769048239925 1.0074573184588012 1.230597622711778 1.0491250337272255 1.0 19.44880590931375 S(ph)LSDLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSDLFR 7 0 O75410-3;E7ET87;E7EVI4;O75410-2;O75410;O75410-9;O75410-7;H0YAY0;O75410-6;O75410-4;O75410-5;O75410-10;B4E3H6;H0YBT8;O75410-8 O75410-3 TACC1 Transforming acidic coiled-coil-containing protein 1 1 S(0.992)LS(0.008)DLFR 119.41 0.0050233000000000005 62439000.0 26776.0 28741.0 30707.0 32157.0 30464.0 31409.0 34174.0 26935.0 36251.0 36033.0 True False 26631.840991093282 29697.626810698617 35030.278689971296 36228.07290286853 34343.4098257254 29237.76975883311 32520.873062642382 28945.026473158643 27317.426788513138 33733.343090596645 0.7894812239501117 0.8803641765045515 1.0384466963707542 1.0739544196841642 1.0180849770356386 0.8667320544041571 0.9640572230063896 0.8580538962717641 0.8098049077183821 1.0 15.041887681042938 2.726015230293304 24.60570608139592 0.8937313787837652 0.9663199892650174 0.09470462276232916 0.09132997561740457 1421.2734088662635 2787588.304602559 0.03147560656532876 0.029860436515962853 532.1269201231949 -2.726015230293304 0.0725886104812522 S(ph)LSDS(ph)ESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 S(0.803)LS(0.197)DS(1)ESDDSK 309.26 2.1069e-45 1056100000.0 4134300.0 3102300.0 2343500.0 2614300.0 2707000.0 3797300.0 3616200.0 3626900.0 5853100.0 3637100.0 True False 4112041.388163911 3205558.1801200444 2673444.4299328392 2945270.111949784 3051720.4043539525 3534801.5888827126 3441270.5907744863 3897557.695025022 4410681.932521759 3404977.1641220287 1.207656084009068 0.9414330920914107 0.7851578148901287 0.8649896812771196 0.8962528255724255 1.0381278400714793 1.0106589339379066 1.1446648559330368 1.2953631463367097 1.0 21.699213691990778 2.037981367794791 1.6189178744202477 1.1632435337830966 0.932624017667573 0.31528035731594817 0.12495666895697576 0.42113412463293787 2.0723472809431023 0.07992725301404002 0.04031800585515559 109.13935122201579 -2.037981367794791 -0.23061951611552367 S(ph)LSDSESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 S(0.604)LS(0.198)DS(0.198)ESDDSK;S(0.998)LS(0.002)DSESDDSK;S(0.986)LS(0.014)DSESDDSK;S(0.616)LS(0.384)DSESDDSK;S(0.792)LS(0.208)DSESDDSK 357.85 3.649099999999998e-71 13404380000.0 5723710.0 4446110.0 3760960.0 3700020.0 3886550.0 4907880.0 5222710.0 5008960.0 7549120.0 4858320.0 True False 5692894.181323966 4594096.08361975 4290470.477149652 4168442.1526284055 4381479.1051133545 4568609.807506823 4970067.564610316 5382754.030183507 5688740.529025408 4548257.85818299 1.2516647821718387 1.0100781940835413 0.9433217312933259 0.916492046537942 0.9633312889748378 1.0044746691938797 1.0927409394057173 1.183476002904966 1.2507515418877408 1.0 22.11688261778835 2.0529985789305747 3.193505785576481 1.1619417175654183 1.0045791539346292 0.23262693003280255 0.10443928219052441 0.30910928802472887 6.303541083339596 0.04757046719467352 0.030204926396497352 112.97922178360399 -2.0529985789305747 -0.15736256363078915 S(ph)LSGSS(ph)PCPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.999)LS(0.001)GS(0.045)S(0.955)PCPK;S(1)LSGS(0.001)S(0.999)PCPK;S(1)LSGS(0.001)S(0.999)PCPK;S(1)LSGSS(1)PCPK;S(1)LSGS(0.004)S(0.996)PCPK;S(1)LSGS(0.001)S(0.999)PCPK 266.97 1.2767e-17 5495190000.0 11640780.0 9701950.0 8075350.0 8424600.0 8590800.0 11513530.0 11311790.0 10603420.0 15734850.0 10792060.0 True False 11578107.333892249 10024873.540797386 9212289.08779952 9491153.49620629 9684787.458339078 10717626.771034338 10764595.502465831 11394701.043475758 11857207.053687774 10103301.491252592 1.1459726648676711 0.9922373938337772 0.911809777801394 0.9394110929406295 0.9585765075628139 1.060804409361992 1.0654532591931247 1.1278195601053038 1.1735972705509885 1.0 23.26832346874845 2.418779388062825 2.174643806478923 1.107601565453226 0.9833480168455604 0.29993056853410427 0.0723996714500907 0.3439400900515339 3.3216257777234413 0.030445444760744653 0.024025760650072024 262.2885837253793 -2.418779388062825 -0.12425354860766569 S(ph)LSGSSPCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.5)LS(0.5)GSSPCPK 228.13 2.3443000000000003e-09 1901400000.0 677700.0 681530.0 637380.0 589110.0 587550.0 679580.0 756820.0 675580.0 863150.0 617290.0 True False 674051.3384995477 704214.3140564146 727117.5637937256 663691.2655971904 662371.0098183096 632602.2341592475 720209.7252668402 725995.2101257296 650438.2481174336 577894.0237114424 1.1663926443996575 1.2185872931055735 1.2582195592263028 1.148465355870489 1.1461807574411753 1.0946682405477208 1.2462660898297502 1.256277414781223 1.1255320550645018 1.0 19.14044542480292 0.9664271056970142 7.753531603542484 1.00000421163517 1.1944123719284867 0.5669977406479929 0.05132828686258466 0.30269576538934784 67.94836036215055 0.05378397363806071 0.013473206579538105 9.256080130945305 -0.9664271056970142 0.19440816029331676 S(ph)LSIEIGHEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSIEIGHEVK 11 0 A0A3B3IU16;C9JTT8;Q68DU7;H7C1N3;O15155-2;O15155 A0A3B3IU16 BET1;DKFZp781C0425 BET1 homolog 1 S(0.5)LS(0.5)IEIGHEVK 134.04 9.6025e-05 265110000.0 477580.0 491190.0 375680.0 416950.0 458670.0 548290.0 396340.0 390630.0 628390.0 556550.0 True False 475008.76234412595 507538.9622193746 428572.47853090276 469735.82724915317 517078.90574991785 510388.00283583073 377167.5200341688 419780.7941789477 473531.7044946005 521030.5025135727 0.9116716968633753 0.9741060451756437 0.8225477711254315 0.9015514926343812 0.9924158053231213 0.9795741331334729 0.7238876000821923 0.8056741249386115 0.9088368189773403 1.0 18.991008308623766 2.265218329642328 24.999999517507167 0.8350944768561481 0.9289191714215924 0.12539385775056466 0.08177119613371372 321.8846999698254 301867.20295905415 0.028284629639514804 0.02365842614278416 184.1697631766458 -2.265218329642328 0.09382469456544429 S(ph)LSLSLADSGHLPDVHGFNSYGSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSLSLADSGHLPDVHGFNSYGSHR 25 0 Q9Y446;Q9Y446-2;E9PKC4;E9PRW6 Q9Y446 PKP3 Plakophilin-3 1 S(0.489)LS(0.489)LS(0.023)LADSGHLPDVHGFNSYGSHR 167.62 2.0679e-11 195540000.0 56636.0 70352.0 64115.0 84223.0 70674.0 79946.0 64639.0 40576.0 91549.0 77429.0 True False 56331.078068851144 72693.62379131792 73141.8347024298 94885.62316442124 79673.91498238305 74419.5211926414 61512.16462504066 43603.98716075313 68987.97564375012 72487.41492969799 0.777115284404664 1.0028447539730851 1.0090280467770372 1.3089944407101037 1.099141348324463 1.0266543684143967 0.8485909545084248 0.6015387250744493 0.9517234917351957 1.0 16.145442919579683 2.2027910312164196 4.208528441243906 0.789453004752068 1.051249614391314 0.2177458539583833 0.1596418092640641 0.23660866354332802 9.158504269639344 0.06343004311730599 0.04722455641185614 159.51114453230954 -2.2027910312164196 0.2617966096392459 S(ph)LSNPDIASETLTLLSFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSNPDIASETLTLLSFLR 19 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.5)LS(0.5)NPDIASETLTLLSFLR 77.468 0.012079 2334800000.0 148550.0 171250.0 144230.0 152680.0 154840.0 174460.0 182120.0 141970.0 183230.0 175840.0 True False 147750.22330545666 176949.9527271889 164536.33033036653 172009.27234536692 174557.95619141686 162399.99083466595 173310.1598340385 152564.52230905258 138075.4216562097 164617.74065580222 0.8975352396215077 1.0749142347735898 0.9995054583721574 1.0449011853772163 1.0603836226643308 0.9865278808207352 1.052803659821885 0.9267805626615202 0.8387639212283347 1.0 17.328760296083118 1.630540666627187 5.453452587038392 0.9082886911350924 1.0195771269189444 0.33829928373398777 0.06016886336671219 0.13307439063101875 8.495307690190645 0.030021766540853718 0.014331435491965014 42.711091153768955 -1.630540666627187 0.11128843578385206 S(ph)LSPILPGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 S(0.679)LS(0.321)PILPGR 90.15 0.0097771 0.0 52377.0 66637.0 60928.0 57134.0 62532.0 73908.0 64964.0 56111.0 69116.0 64631.0 True False 52095.00805163174 68854.97226208287 69506.13280433023 64367.158541918994 70495.07954379811 68798.9139207182 61821.44313342007 60298.28774588474 52083.28790695074 60506.194246617044 0.8609863618144256 1.1379822036308722 1.1487440859530904 1.063811058411062 1.1650886396270008 1.1370557143339883 1.0217374254517184 0.9965638807179824 0.8607926602467277 1.0 15.884795223613276 1.740463702944432 2.1828821610326643 0.9341701463821527 1.0917548442490925 0.30711910444186985 0.08927830334727414 0.31778770912972804 3.1057449451432504 0.05797245973039268 0.02471793046102992 55.01279405139248 -1.740463702944432 0.15758469786693985 S(ph)LSPNHNTLQTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 S(0.592)LS(0.408)PNHNTLQTLK 181.72 7.6098e-06 954820000.0 1235200.0 1455100.0 1482200.0 1398100.0 1311700.0 1762100.0 1705000.0 1568200.0 2106000.0 1830900.0 True False 1228549.8204436228 1503532.1238734736 1690880.8764866467 1575099.3166495787 1478737.2199449851 1640290.1745372291 1622522.6362674888 1685227.0471582462 1587004.518954198 1714050.3944876476 0.7167524504498904 0.8771808161001586 0.9864825922997867 0.9189340766847155 0.8627151364397307 0.9569672979349791 0.9466014776960407 0.9831840724041155 0.9258797314582894 1.0 20.708978095815795 4.667865200525112 2.8152452437007893 0.945178564309628 0.6927921479886041 0.7698555098694109 0.03816301665797195 0.16292747880029723 1.9441573955461942 0.009609014991846557 0.08671438477876643 46544.16039554555 -4.667865200525112 -0.2523864163210239 S(ph)LSPSHLTEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPSHLTEDR 11 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.589)LS(0.411)PSHLTEDR 262.24 1.04e-20 1060100000.0 320440.0 403080.0 375640.0 430340.0 368070.0 342250.0 421960.0 350600.0 374310.0 355490.0 True False 318714.78664423095 416496.27413299464 428526.84687858855 484820.9998762455 414941.5327781891 318591.06306984107 401548.1827562638 376763.55231072695 282066.31599703006 332802.3238496991 0.9576699554182488 1.251482469578829 1.2876317746871286 1.4567836975056743 1.246810803417304 0.9572981924661195 1.2065666432594138 1.1320941150665813 0.8475491178493617 1.0 18.344305981818255 2.786202971581637 11.767696939126138 1.0594982769474965 1.2554639865838562 0.3285721447179816 0.14701778782670838 1.6666064231473077 409.7332516619167 0.04619628255871266 0.048972062814821464 611.2276210988233 -2.786202971581637 0.19596570963635962 S(ph)LSPVFNHTMVYDGFGPADLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPVFNHTMVYDGFGPADLR 21 0 A0A087X1N4;Q8IYJ3-2;Q8IYJ3 A0A087X1N4 SYTL1 Synaptotagmin-like protein 1 1 S(0.499)LS(0.499)PVFNHT(0.001)MVYDGFGPADLR 87.419 0.0016794 187330000.0 118730.0 121380.0 143870.0 119040.0 118970.0 169920.0 150920.0 131840.0 174040.0 131010.0 True False 118090.77087214317 125420.0599242404 164125.64545954237 134110.45179455372 134120.124309564 158173.8303486556 143619.42302961266 141678.57026995506 131150.17401651887 122648.82963669597 0.9628365082809641 1.022594836785261 1.3381753902235096 1.0934507258798047 1.0935295893719306 1.2896481019606136 1.1709807868125175 1.1551563165309282 1.0693145169424376 1.0 16.904173941635296 4.457681148347311 24.98929501302211 1.1597664931545646 0.9777759683469655 0.3104129979570699 0.0956876006520566 203.85784297486492 262049.23816389148 0.021908893557427894 0.06001691498497018 28686.7367706723 -4.457681148347311 -0.18199052480759914 S(ph)LSQSFENLLDEPAYGLIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSQSFENLLDEPAYGLIQK 20 0 Q8TC07-2;Q8TC07-3;C9JA93 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 S(0.333)LS(0.333)QS(0.333)FENLLDEPAYGLIQK;S(0.379)LS(0.379)QS(0.243)FENLLDEPAYGLIQK 161.53 1.4447e-11 71974000.0 93009.0 87333.0 79424.0 82769.0 75088.0 96223.0 85665.0 86258.0 116651.0 104421.0 True False 92508.24987827132 90239.82611108676 90606.20883421625 93247.54691350316 84650.01171855546 89571.33049457792 81521.05667792054 92695.00996924881 87903.92409331727 97756.7623806841 0.9463104917287049 0.9231057157936051 0.9268536173628359 0.9538731095694315 0.8659248696157881 0.9162673590372143 0.8339173136735183 0.9482209487286023 0.8992106730274276 1.0 16.576908884686876 -1.3719255811188251 2.91266974005197 1.0012943038964817 0.9124584801716078 0.3460009717532726 0.03603438904415199 8718770.974870792 10638827.118138587 95749.85241370421 0.008294379157959183 0.04246923312084875 1.3719255811188251 -0.08883582372487386 S(ph)LSS(ph)SPQAQPPRPAELSDEEVAELFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 2 S(0.839)LS(0.174)S(0.494)S(0.494)PQAQPPRPAELSDEEVAELFQR;S(0.75)LS(0.265)S(0.487)S(0.497)PQAQPPRPAELSDEEVAELFQR 105.98 0.0011294 284990000.0 90532.0 82806.0 83853.0 89167.0 91986.0 94497.0 93422.0 90512.0 119597.0 88419.0 True False 90044.58577105078 85562.14765271598 95658.77353665815 100455.53305750161 103699.87185626237 87964.64481201096 88902.82095330291 97266.46505062311 90123.92186769476 82776.02372068567 1.0878099928415468 1.033658586228201 1.155633832562956 1.2135824909453563 1.2527766760841381 1.0626826568624925 1.0740165685330711 1.1750560207969531 1.0887684357949277 1.0 16.336925327607528 -3.215716755178387 9.24547057181472 1.011218523411285 1.1236563076627464 0.0 0.07778030892238015 0.0 0.0 0.0 0.017369165848800574 0.0006085317534365812 3.215716755178387 0.11243778425146145 S(ph)LSS(ph)SPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 S(0.991)LS(0.056)S(0.859)S(0.093)PVKK 114.24 0.0058455 469090000.0 1945000.0 987330.0 830750.0 771010.0 676300.0 1255600.0 1109400.0 1217000.0 2417600.0 1419800.0 True False 1934528.3361098128 1020192.682196412 947712.3789915537 868619.7869465642 762422.7962558458 1168803.3273644764 1055734.0836804428 1307818.7198007815 1821814.8741802818 1329187.1484480663 1.4554220888823153 0.7675312565183688 0.7130014611547251 0.6534969796847255 0.5736007883811066 0.8793369155947295 0.7942704568826879 0.9839236869900267 1.3706232988389921 1.0 20.34211281850507 1.5053610007863694 3.94181265041904 1.1880836403186692 0.8133593804836253 0.2461337400889485 0.24167905124915792 0.24407529383891555 8.069488653694751 0.1575014498683701 0.06227906443245989 32.0155524880872 -1.5053610007863694 -0.37472425983504387 S(ph)LSSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSSLR 6 0 O94915;H0Y9X0;A0A286YEZ9;A0A2C9F2R7;C9J1G1;Q70YC5-2;Q70YC5;Q70YC5-4;Q70YC5-3;Q8TF61 O94915;Q8TF61 FRYL;ZNF365;FBXO41 Protein furry homolog-like;Protein ZNF365;F-box only protein 41 1 S(1)LSSLR;S(0.999)LS(0.001)SLR;S(0.999)LS(0.001)SLR;S(0.999)LS(0.001)SLR 176.41 0.0040937 977850000.0 536900.0 391709.0 424210.0 488295.0 388639.0 424255.0 453275.0 407684.0 539580.0 476350.0 True False 534009.3900551978 404746.7972719089 483935.0807005812 550113.0969339854 438129.8730061745 394927.2504388469 431348.3565713475 438107.45025740546 406607.7390015697 445948.935176247 1.1974675751701205 0.907607946438858 1.085180482624813 1.2335786758108769 0.9824664629662537 0.8855885041697983 0.9672595280463467 0.9824161819878717 0.9117809393151058 1.0 18.766518993582846 3.0216524821785185 24.98949515101363 0.9508059875552166 1.092521150737131 0.4239934283723641 0.08638518662950462 245.74881894355906 283620.8750091703 0.024822154315463776 0.029666039240152067 1051.1204418269763 -3.0216524821785185 0.14171516318191446 S(ph)LSSS(ph)PVKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 S(0.988)LS(0.015)S(0.154)S(0.842)PVKK;S(1)LS(0.017)S(0.121)S(0.862)PVKK;S(0.999)LS(0.017)S(0.118)S(0.866)PVKK 122.42 0.0020515 1453910000.0 6972900.0 3231950.0 2707130.0 2850970.0 2417000.0 4635120.0 4050130.0 4264510.0 8773800.0 4998700.0 True False 6935358.681162028 3339523.501994969 3088270.3732042233 3211902.5096834563 2724790.6233186186 4314705.064298847 3854209.7389009134 4582749.390942997 6611614.552896656 4679678.686397617 1.482015998517372 0.713622392858282 0.6599321406789901 0.6863510776967373 0.5822601947519912 0.9220088286916716 0.8236056355971432 0.9792871900080741 1.4128351530019745 1.0 22.15797804497588 1.4948645052324274 3.874210467735324 1.2094279646338544 0.8167234174598951 0.24051213878529487 0.25504376551000824 0.2514712717205481 7.866880909843084 0.16746073807759068 0.06490513627516774 31.25104219274378 -1.4948645052324274 -0.3927045471739593 S(ph)LSSSPDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSSSPDKR 9 1 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 Q9BVI0 PHF20 PHD finger protein 20 1 S(0.276)LS(0.276)S(0.224)S(0.224)PDKR;S(0.283)LS(0.283)S(0.217)S(0.217)PDKR 74.944 0.024291 359370000.0 178557.0 157105.0 138680.0 132846.0 128658.0 179138.0 178870.0 145670.0 278180.0 191783.0 True False 177595.66895154785 162334.1449530221 158204.93857183115 149664.28997899278 145041.8336842889 166754.6117054935 170217.37475024388 156540.63509727205 209626.2664210249 179543.24474631308 0.989152608902011 0.9041506695637215 0.8811522750152363 0.833583520173438 0.8078378771043533 0.9287712937410184 0.9480578063003915 0.8718826225874289 1.1675530689958167 1.0 17.45397184754892 1.2504045930314327 24.984859092004832 1.0837765402992772 0.8930991143391719 0.5916378836542369 0.06251629755717612 124.2287167338341 262063.837739798 0.042093318503760954 0.015103512696282977 17.799368446332345 -1.2504045930314327 -0.19067742596010528 S(ph)LSTSGESLYHVLGLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 S(0.292)LS(0.292)T(0.138)S(0.138)GES(0.138)LYHVLGLDK 89.04899999999998 0.00267 18926000.0 28974.0 42732.0 45713.0 40016.0 45559.0 49991.0 39424.0 36571.0 40816.0 40157.0 True False 28818.007203314042 44154.30878796054 52148.99305548109 45082.0214970671 51360.668600650744 46535.239836156055 37516.910505694774 39300.11372377521 30757.443706379192 37594.145879862604 0.7665557104397597 1.174499586426617 1.387157277681758 1.1991766388610892 1.366187936940528 1.237832081219932 0.9979455478410216 1.045378550409531 0.8181445006004111 1.0 15.198220404015252 2.201713479245034 6.634995338563066 0.9766411655823152 1.2055548858608909 0.29230382959219936 0.1686107815758876 0.24937841704264144 30.677255918381483 0.06466377803069133 0.048312633522504464 159.11586322145627 -2.201713479245034 0.2289137202785757 S(ph)LSVEHLETK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSVEHLETK 10 0 J3KN34;P26045-2;P26045 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 S(0.581)LS(0.419)VEHLETK 125.54 0.00026172 177070000.0 601320.0 558120.0 472400.0 517980.0 469870.0 647090.0 594830.0 580700.0 831850.0 671940.0 True False 598082.5599329327 576696.6868093348 538909.8138255912 583556.2148903138 529705.1593623164 602358.1913860147 566055.8004287338 624034.7827348509 626851.713718922 629056.2139232234 0.9507617072930289 0.9167649473052035 0.8566957958567522 0.9276694228181284 0.8420633126866578 0.9575586061368003 0.899849310602027 0.9920175159592567 0.9964955433942021 1.0 19.262829419879267 1.700902607858274 4.591321214563728 0.9974198923077989 0.9057617428444262 0.5817053292618044 0.034463942602094566 0.11370781805245342 5.638983080233794 0.0179489160086551 0.008755585096756944 50.22299499715671 -1.700902607858274 -0.0916581494633727 S(ph)LT(ph)RS(ph)PPAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR 70.26 0.011988 0.0 222420.0 252220.0 199866.0 248130.0 230450.0 288770.0 259800.0 256350.0 316420.0 250840.0 True False 221222.51543318492 260614.99022979036 228005.39553358508 279543.2325586579 259796.44151583582 268808.00959146256 247232.48146762088 275480.1387189243 238442.53081077253 234831.1764450717 0.9420491724399723 1.1097972346561473 0.9709332422772101 1.1904008521800535 1.1063115445261316 1.1446862110080098 1.052809448942355 1.1730986612987506 1.0153785132807762 1.0 17.841264429379216 5.7891993827174195 1.0201381154458382 1.1012108879291371 4.650316759544516e-16 0.2310512327278612 0.07229364924664117 16.946321802218836 2.7361776263967785 0.019775352256687487 33.545184322319415 615459.3625901955 -5.7891993827174195 -1.1012108879291367 S(ph)LTELVQQPCPPIEASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLTELVQQPCPPIEASK 17 0 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 S(0.937)LT(0.063)ELVQQPCPPIEASK 212.78 1.3246e-12 121170000.0 359290.0 303420.0 286900.0 261550.0 265680.0 392610.0 367780.0 353360.0 536010.0 430660.0 True False 357355.6225608715 313519.1512787368 327293.0262204959 294662.20318267436 299512.7731912662 365469.7948045296 349989.0763439634 379729.5175257225 403917.5176660207 403174.9100934237 0.8863538221613667 0.7776256493889666 0.8117891714656936 0.7308545145192573 0.742885446720539 0.9064795096496528 0.8680824812805538 0.9418480863249442 1.0018418992700338 1.0 18.62104633596795 1.930375843204392 1.071092648140496 1.0019551399110518 0.7914784245287535 0.7322023173551749 0.04865068230122711 0.2625387104811925 0.5536995633195272 0.03989582037489596 0.01778972400638531 85.18749412048614 -1.930375843204392 -0.21047671538229829 S(ph)LTNLVAAGDDVLEDQEILMHHPPQVDELDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLTNLVAAGDDVLEDQEILMHHPPQVDELDR 31 0 Q7Z5Y7-2;Q7Z5Y7-3;Q7Z5Y7 Q7Z5Y7-2 KCTD20 BTB/POZ domain-containing protein KCTD20 1 S(0.5)LT(0.5)NLVAAGDDVLEDQEILMHHPPQVDELDR 93.411 0.00075362 13190000.0 6678.4 4906.8 3727.9 3611.0 2367.6 4875.9 3322.8 2070.4 4520.8 5680.1 True False 6642.444236439993 5070.119871776761 4252.755916512327 4068.1522297558295 2669.0998261353575 4538.840509633999 3162.063469671331 2224.903761278177 3406.7094156163985 5317.591155021727 1.2491453447238279 0.9534617694308327 0.7997523300557224 0.7650366700181574 0.5019377662411604 0.8535519894845045 0.594642080876263 0.4184044422401794 0.6406489924294451 1.0 12.37655714397556 5.054510634984648 0.7531521942872054 0.6224262132246529 1.9282576743795699 0.5366720500247346 0.16199682746038452 2.809162290423197 0.875848623366336 0.0583132541126651 3.4458173233295963 113373.26005607874 -5.054510634984648 1.3058314611549169 S(ph)LTNSHLEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLTNSHLEK 9 0 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 S(0.996)LT(0.004)NSHLEK;S(0.98)LT(0.02)NSHLEK;S(0.992)LT(0.007)NS(0.002)HLEK;S(0.988)LT(0.012)NSHLEK 133.15 0.00018364 2622520000.0 2392780.0 2265560.0 2851090.0 2077810.0 2994350.0 4465210.0 2668150.0 2301620.0 4004920.0 3226670.0 True False 2379897.538342848 2340967.795040058 3252498.6898814724 2340860.53295734 3375662.7235970623 4156540.5426737303 2539081.391177186 2473378.5717895445 3017961.12917856 3020741.1581088332 0.787852190497781 0.7749647098216271 1.0767220756901044 0.7749292012900769 1.1174948619928864 1.3760002347490032 0.8405491428357947 0.8187985803252434 0.9990796864793229 1.0 21.52647113673608 4.253758987706999 24.918323482348868 0.9862321903889012 0.7814082727303245 0.21667116564006716 0.16482767762980804 398.82047691481034 653869.5825825786 0.043083473442994194 0.11700882148232403 17937.37913361469 -4.253758987706999 -0.20482391765857666 S(ph)LTRS(ph)PPAIR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.692)LT(0.311)RS(0.996)PPAIR;S(0.999)LT(0.029)RS(0.972)PPAIR;S(0.91)LT(0.092)RS(0.998)PPAIR 128.71 0.00018349 947390000.0 596730.0 803270.0 701430.0 731050.0 860180.0 847180.0 929810.0 703540.0 917450.0 825440.0 True False 593517.271982936 830006.3563630304 800185.2470611441 823600.8550437551 969718.8243136978 788616.4406472105 884831.5380808656 756041.7273037321 691356.7407001557 772759.7125052625 0.7680489321302372 1.0740807820741276 1.0354903783311489 1.065791657763404 1.2548775623536326 1.0205196102816243 1.1450280388094636 0.978365868547506 0.8946593999560344 1.0 19.55966035628656 4.740605032629998 24.750513138496927 1.0572522345121378 0.7680488176069337 0.4602384531847299 0.09212852854865834 144.05946510980087 1743899.691280655 0.0222353499644491 0.14565322117515578 55030.69942763227 -4.740605032629998 -0.2892034169052041 S(ph)LTS(ph)SLENIFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTSSLENIFSR 12 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 S(1)LTS(0.844)S(0.156)LENIFSR;S(1)LTS(0.795)S(0.205)LENIFSR 192.32 6.2012e-06 101419000.0 259890.0 236380.0 228970.0 250320.0 220703.0 273850.0 273180.0 258360.0 394000.0 306250.0 True False 258490.78111649354 244247.76540527237 261206.9857570823 282010.48633411207 248808.21884083137 254919.39407356025 259965.2397510574 277640.1351254974 296903.9793295127 286704.8628061838 0.9015918969300379 0.8519135776583846 0.9110657670765131 0.9836264497709437 0.8678200167432422 0.8891352297916518 0.9067346720477402 0.9683830696418488 1.0355735735470368 1.0 18.129206848798542 1.5709100890064926 2.7571203260060524 1.016664821889417 0.9010725168531901 0.6617790597145965 0.03376615147274927 0.1443858902922486 2.4715760183936273 0.0247378745024889 0.009399516128922944 37.23146188310454 -1.5709100890064926 -0.11559230503622686 S(ph)LTSSLENIFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTSSLENIFSR 12 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 S(0.999)LT(0.001)SSLENIFSR;S(0.999)LT(0.001)SSLENIFSR 117.48 0.00076489 72478000.0 48085.0 49010.0 51595.0 44015.0 46047.0 54584.0 61975.0 47125.0 58223.0 54984.0 True False 47826.11570274574 50641.26822282934 58859.127528220604 49587.29448704041 51910.81250804815 50810.736556915115 58977.03248250893 50641.706795901264 43874.721798228995 51474.87404582926 0.929115740237947 0.983805578188346 1.1434535512572013 0.9633300791157198 1.0084689563656002 0.9870978316853608 1.145744085357068 0.9838140983271526 0.8523521934053947 1.0 15.651580774272354 1.468475658370115 19.264490970242765 0.9234775080901889 1.0249259787651763 0.20952888130534275 0.07478412184857645 0.5019149578717073 1112.9336457575387 0.039031321951612935 0.018070968359958296 29.408688573277285 -1.468475658370115 0.10144847067498741 S(ph)LVGTPYWMAPELISR ddPTM_BT-474_Trastuzumab_2h_R1 14 SLVGTPYWMAPELISR 16 0 O96013;O96013-4;O96013-2;O96013-3;M0R1R1 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(0.999)LVGT(0.001)PYWMAPELISR 401.77 1.0526999999999997e-139 13319840000.0 3635174.6 2932348.9 3011222.0 3446669.0 2645325.4 3069343.0 2990504.6 2972256.0 3975305.0 3462163.0 True False 3615603.223859471 3029950.360494159 3435175.8835891723 3883016.9420050653 2982191.909617945 2857166.542866251 2845842.4676610315 3194060.8355301484 2995644.349107893 3241204.7932331283 1.1155121180272218 0.9348222509173075 1.0598453669947083 1.19801653697165 0.9200874674269454 0.8815137349023244 0.8780199491258559 0.9854548043982271 0.9242379115821662 1.0 21.628098748525936 3.1867658790662308 24.999974707444096 0.9286416887009188 1.0656616696744783 0.49942904268790855 0.07095887851912916 88.99429777800071 42954.85379810669 0.0208838861479289 0.024961043518288654 1537.32567017488 -3.1867658790662308 0.1370199809735595 S(ph)LVGTPYWMAPEVISR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLVGTPYWMAPEVISR 16 0 Q9NQU5-2;Q9NQU5 Q9NQU5-2 PAK6 Serine/threonine-protein kinase PAK 6 1 S(1)LVGTPYWMAPEVISR;S(1)LVGTPYWMAPEVISR;S(0.999)LVGT(0.001)PYWMAPEVISR;S(0.999)LVGT(0.001)PYWMAPEVISR 313.32 1.0397999999999997e-57 558491000.0 181699.0 166121.0 146311.0 181882.0 139844.0 157376.0 177191.0 153012.0 193936.0 163709.0 True False 180720.75277265662 171650.2370627349 166910.3170419901 204908.24255121857 157652.30447967252 146496.9675432559 168619.59439464708 164430.5324191924 146143.07140925995 153260.9514616735 1.179170239053684 1.1199867639191843 1.0890596427213879 1.3369892369646463 1.0286527845228546 0.9558662278035699 1.1002123684245453 1.072879496381778 0.9535571195106827 1.0 17.2256306416967 3.089613433177354 24.99998429963802 1.0281933043458686 1.1718970055869402 0.5297028953521001 0.074595849500797 17.59397548843874 4903.38507429008 0.0216131039960067 0.025832599737227083 1229.1741921008183 -3.089613433177354 0.14370370124107157 S(ph)LY(ph)S(ph)FIKGDT(ph)SGDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLYSFIKGDTSGDYR 15 1 P09525;Q6P452;P09525-2 P09525 ANXA4 Annexin A4;Annexin 4 S(0.777)LY(0.816)S(0.833)FIKGDT(0.797)S(0.777)GDYR 44.382 0.091281 4419600000.0 510470.0 1119000.0 1016600.0 1138400.0 1037800.0 769400.0 863790.0 700580.0 440260.0 792080.0 True False 507721.6862385484 1156245.2385502148 1159728.4435543958 1282521.323277219 1169957.678477477 716213.1889727851 822005.1777017576 752860.8370731564 331763.8221817544 741528.7762661938 0.6846958641242085 1.559272243448508 1.5639695729597374 1.7295637935119321 1.5777643645450192 0.9658602766289397 1.108527684981809 1.0152820243389915 0.44740518884820446 1.0 19.500143154400583 2.725765050947197 20.681313366688368 0.9340118356234794 1.4554779015863042 0.39949525538014263 0.3139969999749127 80.72563955254253 130474.23346905927 0.1021455410639942 0.09722008980884798 531.8204717724477 -2.725765050947197 0.5214660659628247 S(ph)MDDLLSACDTSSPLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMDDLLSACDTSSPLTR 17 0 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 S(1)MDDLLSACDTSSPLTR 99.055 0.0017574 109790000.0 38991.0 36817.0 36578.0 37347.0 36010.0 42109.0 42090.0 37674.0 57570.0 40656.0 True False 38781.07678830736 38042.43158865352 41727.864458324504 42075.12637072581 40595.66005200803 39198.10394392384 40053.945900585764 40485.42518469568 43382.64489847729 38061.29927264721 1.0189110074909455 0.9995042816626271 1.096333158766135 1.1054569122647673 1.0665862917922548 1.0298677316066716 1.052353615510193 1.0636900462772845 1.1398098784729156 1.0 15.216037190299877 4.248261827569815 24.999823138908454 1.0700653132026043 1.0092076188036463 0.29337126053182017 0.03726476841103585 237.17877190453663 611191.386837887 0.008896640088303156 0.02370417873703389 17711.764438156406 -4.248261827569815 -0.06085769439895805 S(ph)MDELNHDFQALALEGR ddPTM_BT-474_Trastuzumab_2h_R1 9 SMDELNHDFQALALEGR 17 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38 Q5T1Z4 PUM1 Pumilio homolog 1 1 S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR 278.52 5.042e-36 1536506000.0 510218.0 442126.0 455415.0 496129.0 459642.0 543156.0 471581.0 474705.0 683581.0 596211.0 True False 507471.04297854926 456841.89663918875 519533.4734618584 558938.8805307479 518174.68418842246 505608.9041716942 448768.82541563583 510129.8976031469 515121.6220661111 558160.3035380816 0.9091851207650887 0.8184779421670567 0.9307961712229007 1.0013948985403138 0.9283617643601718 0.9058489128781227 0.8040142277603188 0.9139487247113809 0.9228918982608477 1.0 19.09031999775655 2.3302471330824956 0.007804053607378189 1.8200557147143064 6.716147383612392e-07 0.11575333023232515 0.05712903417009442 9229.931414973387 39.37277975616134 4525.7045678962195 4653.209703818062 213.91790322510008 -2.3302471330824956 -1.8200550430995681 S(ph)MDLGIADETK ddPTM_BT-474_Trastuzumab_2h_R1 5 SMDLGIADETK 11 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(1)MDLGIADETK;S(1)MDLGIADETK;S(1)MDLGIADETK;S(1)MDLGIADETK;S(1)MDLGIADETK 246.63 5.144e-16 1878370000.0 3639940.0 2716040.0 2513540.0 2451810.0 2067280.0 3076310.0 3136100.0 2955610.0 5137120.0 3241520.0 True False 3620342.9674753537 2806441.7495191456 2867424.583918669 2762208.8946102583 2330535.8542714585 2863651.930554807 2984394.861934589 3176172.62648348 3871145.6098812823 3034643.4183951067 1.1930044055686775 0.9248011586822128 0.944896710610938 0.9102251941254675 0.7679768371283567 0.9436535156638833 0.9834416932955201 1.0466378379846757 1.2756509006677845 1.0 21.533095573865737 1.6047374986670517 2.9461650350944235 1.1424478929097774 0.9407873622707222 0.28313112843126087 0.11653309032081306 0.24932888615110116 5.046162543873279 0.07651671040081785 0.03084633676357813 40.24736929504705 -1.6047374986670517 -0.2016605306390552 S(ph)MDSSDLSDGAVTLQEYLELK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMDSSDLSDGAVTLQEYLELK 21 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 S(0.77)MDS(0.107)S(0.107)DLS(0.016)DGAVTLQEYLELK 118.46 5.2911e-05 25126000.0 12485.0 10267.0 8527.7 7741.2 8628.0 11419.0 11065.0 10917.0 13219.0 11895.0 True False 12417.782147213898 10608.730888467442 9728.326035902834 8721.235126276877 9726.724657837407 10629.631407434666 10529.743677595186 11731.681975402753 9961.354575524945 11135.850916178146 1.1151174922046923 0.9526645936912729 0.873604191465022 0.7831673746284338 0.8734603876302293 0.9545414613976159 0.9455715379861626 1.0535056605651019 0.8945301666218525 1.0 13.44292418155902 2.2695708145731164 2.565358027304221 0.9882343141371847 0.9125387456038709 0.06693895177159814 0.08791710853459725 0.6382759938232109 8.62567156870204 0.039307386338972086 0.028526990914731067 186.02478641497683 -2.2695708145731164 -0.07569556853331372 S(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SMDSSDLSDGAVTLQEYLELKK 22 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 S(0.997)MDS(0.002)SDLSDGAVTLQEYLELKK;S(0.934)MDS(0.061)S(0.006)DLSDGAVTLQEYLELKK;S(0.999)MDS(0.001)SDLSDGAVTLQEYLELKK 225.3 3.7954e-26 1700260000.0 1041110.0 808050.0 738460.0 655417.0 670720.0 1088310.0 1025040.0 963620.0 1609430.0 1118210.0 True False 1035504.7794381961 834945.4557734594 842428.7491906151 738392.7249985808 756132.2163310971 1013077.6913061762 975454.8991669376 1035530.2175632123 1212807.5417571 1046844.8804522534 0.9891673530378654 0.7975827855343285 0.8047312117786474 0.7053506577589447 0.722296331051871 0.9677438465081004 0.9318046229977509 0.9891916528414859 1.1585360585927003 1.0 19.997616251533803 2.1519116781265235 1.3387750831537766 1.054871425164371 0.803748778263703 0.5648156395547257 0.0901958722029214 0.32954416698731925 1.1266296011821362 0.060095608791823366 0.03210663294780079 141.87689592493444 -2.1519116781265235 -0.251122646900668 S(ph)MGETESGDAFLDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SMGETESGDAFLDLK 15 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5;B1AKL6 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 S(1)MGETESGDAFLDLK;S(1)MGETESGDAFLDLK 129.38 6.9485e-05 45557000.0 68186.0 63830.0 53780.0 53607.0 55776.0 76059.0 66693.0 62089.0 105087.0 67911.0 True False 67818.89415217686 65954.54296395015 61351.7565358601 60393.64070355042 62878.74298974728 70801.2203536276 63466.80479799874 66722.3964615536 79189.71694365618 63576.86183846781 1.0667228955793215 1.0373985292247265 0.9650013347896735 0.9499311377934142 0.9890192936780323 1.113631882830502 0.9982689136065146 1.0494760913345764 1.245574485020298 1.0 15.956214186182386 1.439838047530399 9.511044579099478 1.1312588637731786 1.017521785513777 0.2535391479486031 0.07132325672826136 0.2908319064446661 64.00685537349828 0.040652619477395714 0.017044570928640677 27.532018172035407 -1.439838047530399 -0.1137370782594016 S(ph)MGYDDLDYGMMSDYGTAR ddPTM_BT-474_Trastuzumab_2h_R1 5 SMGYDDLDYGMMSDYGTAR 19 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR 343.26 4.0358999999999976e-76 2890524000.0 560340.0 490139.0 514909.0 425237.0 318315.0 450623.0 485158.0 370893.0 872600.0 431941.0 True False 557323.1916996266 506452.9803197171 587403.7115307399 479071.9605994684 358850.52844917926 419472.4926624423 461689.0540564591 398570.91901649314 657559.4222409471 404374.1555767048 1.3782364278567483 1.2524365697838202 1.4526242674757601 1.184724478537042 0.8874220162200986 1.0373375421686006 1.1417372937645178 0.9856488440713148 1.6261163409495298 1.0 18.625331268876554 3.488108171097405 23.68377342402425 1.0967082654956959 1.3449731633499713 0.24483199406000777 0.1930209963994478 353.3395628823365 761670.0725264773 0.05090439873816789 0.07380717579789056 3076.8630833081834 -3.488108171097405 0.2482648978542754 S(ph)MPVLGSVSSVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMPVLGSVSSVTK 13 0 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-7 A0MZ66 KIAA1598 Shootin-1 1 S(1)MPVLGSVSSVTK 183.96 1.0394e-05 72078000.0 313780.0 74496.0 96678.0 123240.0 67322.0 108220.0 90038.0 125020.0 219540.0 164700.0 True False 312090.6433442351 76975.55432621708 110289.42205975999 138842.1713639182 75895.05765124358 100739.00612247825 85682.51796143834 134349.62723869656 165437.3086852825 154188.70499323573 2.024082395386397 0.49922952741313964 0.715288594353253 0.9004691450648685 0.4922219020814339 0.6533488048096499 0.5556990569782477 0.8713324834305501 1.0729534870439457 1.0 17.2343375597476 4.745076290044621 24.90099877974041 0.7369069722818714 2.024083008190565 0.7915198430233459 0.19586094950308827 301.1322441978046 1150807.2953997066 0.046121777078450506 0.4402762610757118 55600.191839099396 -4.745076290044621 1.287176035908694 S(ph)MSAPSDLEMIGNEDLEFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-4;Q9Y4D8;Q9Y4D8-2 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 S(0.5)MS(0.5)APS(0.001)DLEMIGNEDLEFTR 131.67 5.449e-05 42054000.0 62287.0 60916.0 49490.0 59687.0 55558.0 65311.0 62408.0 49450.0 70127.0 70365.0 True False 61951.6537127363 62943.55223550039 56457.76182520857 67243.368080154 62632.98198193449 60796.204295557014 59389.086618288304 53140.21010201206 52845.140503656745 65874.24545749262 0.9404533332030726 0.9555107887515258 0.8570536395994042 1.0207838831876237 0.9507961957962819 0.922913103191256 0.9015524383745834 0.8066917462652746 0.8022124600691888 1.0 16.007426911351022 2.0645941508691585 3.199507975369151 0.8491089585452832 0.9423723918543802 0.17929926205563418 0.06407921115048382 0.3018317387452769 6.160215606600017 0.027295872264879666 0.01755859332481429 116.03637445887925 -2.0645941508691585 0.09326343330909692 S(ph)MSDVSAEDVQNLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SMSDVSAEDVQNLR 14 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 S(0.999)MS(0.001)DVSAEDVQNLR;S(1)MSDVSAEDVQNLR;S(0.999)MS(0.001)DVSAEDVQNLR;S(0.997)MS(0.003)DVSAEDVQNLR;S(0.987)MS(0.013)DVSAEDVQNLR 396.88 2.0278e-114 1939428000.0 1567391.0 896849.0 767509.0 902564.0 745398.0 900726.0 911307.0 905804.0 1180977.0 1002751.0 True False 1558952.3410095114 926700.0768083301 875567.5958921806 1016828.5098580284 840320.016979913 838460.931700936 867223.59887919 973399.6940595142 889941.0426310402 938754.5726816771 1.6606601835836146 0.9871590549605402 0.9326906322181798 1.08316757057526 0.8951434607444066 0.8931630866050123 0.9238022632495421 1.0369054089173368 0.9480018191430007 1.0 19.84038850446091 4.73837117704377 5.849733140350511 0.9658595349645208 1.681132508887995 0.9284260164997844 0.05783637918046773 0.031915611451074924 4.956770367227342 0.014066575092059523 0.09109962168565874 54748.3679079318 -4.73837117704377 0.7152729739234741 S(ph)MSIDDTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SMSIDDTPR 9 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0C4DGY6;A0A1B0GVW2 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 S(1)MSIDDTPR;S(0.999)MS(0.001)IDDTPR 181.87 4.928100000000001e-05 323350000.0 530470.0 537070.0 549530.0 524200.0 539480.0 562440.0 566400.0 470540.0 649170.0 516140.0 True False 527614.008460758 554946.0502843289 626899.0473996138 590563.6662525631 608179.5802515218 523559.8466413485 539001.0681418815 505654.0841537063 489190.75193233485 483199.5033103143 1.0919175306393483 1.1484822448750291 1.297391746276309 1.2221942742215501 1.258651087356239 1.0835272864614567 1.1154834896337444 1.0464706207054428 1.0123991199928302 1.0 18.882259446127712 2.1227197554312314 1.2058572848200717 1.0137496322466688 1.2038695217379964 0.6263570777231531 0.05954256770621731 0.3257365447908481 0.8916658409485576 0.04383263272985844 0.022488828099122265 132.65381836877947 -2.1227197554312314 0.19011988949132763 S(ph)MSVDLSHIPLKDPLLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSVDLSHIPLKDPLLFK 18 1 A0A0C4DGH6;A0JNW5 A0A0C4DGH6 UHRF1BP1L UHRF1-binding protein 1-like 1 S(0.5)MS(0.5)VDLSHIPLKDPLLFK 141.47 7.2275e-08 48515000.0 726970.0 368280.0 307420.0 351110.0 317730.0 458520.0 348840.0 354270.0 767240.0 504780.0 True False 723056.0742939597 380537.9771700392 350702.06385745876 395560.489999881 358191.03216674586 426823.591639981 331965.2765017898 380707.4263466094 578163.982489278 472564.50823609997 1.5300685127472808 0.8052614416398723 0.7421252712491964 0.8370507795355917 0.7579727760422256 0.9032070420039541 0.7024761079516687 0.80562001528139 1.223460442781325 1.0 18.850151754796936 4.7404490143602285 24.821806756380212 0.8423423936189369 1.5300687687118928 0.6492799348078939 0.14604356254523546 86.7201030820336 1139784.814617972 0.033282029267624726 0.21611158658598068 55010.93345581382 -4.7404490143602285 0.6877263750929559 S(ph)NENLDKIDMSLDDIIK ddPTM_BT-474_Trastuzumab_2h_R1 4 SNENLDKIDMSLDDIIK 17 1 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 S(1)NENLDKIDMSLDDIIK;S(0.999)NENLDKIDMS(0.001)LDDIIK;S(1)NENLDKIDMSLDDIIK;S(1)NENLDKIDMSLDDIIK 231.29 3.1187000000000003e-16 388490000.0 697491.0 394350.0 344206.0 329590.0 294554.0 539011.0 492615.0 479568.0 951398.0 510507.0 True False 693735.7859545349 407475.70136039064 392667.21290781436 371316.06020637625 332063.70594166016 501750.4382654138 468785.33047795366 515355.7993569608 716938.7109800498 477926.0061929685 1.451554795020781 0.8525916063999817 0.821606708611019 0.7769321095626941 0.6948014998949134 1.0498496247614235 0.9808742868214537 1.0783171300138028 1.5001039945304357 1.0 18.86642774795301 1.5526998537872871 3.367627950628243 1.2601857822140774 0.9262482868718561 0.2112993545685795 0.2273192208193966 0.27168821837560786 6.9266502684526605 0.14821819435919786 0.058867401463768426 35.7026007840044 -1.5526998537872871 -0.3339374953422213 S(ph)NGDLSPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SNGDLSPK 8 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 S(0.998)NGDLS(0.002)PK;S(1)NGDLSPK;S(0.997)NGDLS(0.003)PK;S(1)NGDLSPK;S(0.999)NGDLS(0.001)PK;S(1)NGDLSPK 151.55 0.00049446 11513720000.0 18572600.0 15003780.0 14557560.0 13106530.0 13153430.0 15379910.0 16865070.0 16189170.0 24684500.0 16892400.0 True False 18472607.185209863 15503171.747323459 16607137.911420166 14765815.354157185 14828441.344012333 14316733.022113873 16049242.133276097 17397288.07233953 18601335.7303537 15814312.569688732 1.1680942250133768 0.9803253653300342 1.0501334053084952 0.9336994756546548 0.9376595586224837 0.9053022671092724 1.014855502732231 1.1000976486126173 1.1762342275949986 1.0 23.914727509105358 -0.40659434889695 6.158900653371461 1.0000000022610411 1.024412568700795 0.0066138157716322254 0.09058767035702862 0.0 0.0 0.0913886589759104 0.021540513495137036 0.3921079530520582 0.40659434889695 0.02441256643975387 S(ph)NIDISSGLEDEEPKRPLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SNIDISSGLEDEEPKRPLPR 20 2 Q9BZ71;Q9BZ71-3 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 S(1)NIDISSGLEDEEPKRPLPR;S(1)NIDISSGLEDEEPKRPLPR;S(1)NIDISSGLEDEEPKRPLPR 302.57 2.9586e-55 685770000.0 687906.0 447987.0 430084.0 480740.0 361410.0 466351.0 424256.0 519759.0 824512.0 562035.0 True False 684202.390529542 462897.9764811403 490636.08884285716 541601.6347086179 407433.4212551018 434113.25304217206 403733.1164646923 558546.0558627238 621322.0654947589 526165.4451176282 1.30035599425687 0.8797574617954168 0.9324749342541333 1.0293371405025256 0.774344695258384 0.825050860086646 0.7673121072677715 1.0615407397911825 1.180849239075093 1.0 19.005156979887836 -0.6388695776062447 6.561104472179108 1.0000051344435223 0.9583015171983138 0.0 0.1664758650268655 0.0 3.6229284377798944e-10 0.15952053716103995 0.037599351188364015 0.2296838304985024 0.6388695776062447 -0.041703617245208546 S(ph)NPSIQATLNK ddPTM_BT-474_Trastuzumab_2h_R1 3 SNPSIQATLNK 11 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 S(0.964)NPS(0.036)IQATLNK;S(1)NPSIQATLNK;S(1)NPSIQATLNK 218.58 1.102e-11 1005350000.0 1889890.0 1495100.0 1255020.0 1292490.0 1166710.0 1606090.0 1422840.0 1491510.0 2269620.0 1540640.0 True False 1879715.0422265183 1544863.499692963 1431715.9071706072 1456119.1014780158 1315283.602868046 1495064.7786291908 1354011.793423363 1602814.0499343178 1710302.5623498703 1442315.0361917368 1.3032624600445717 1.0710999060038875 0.9926513079631234 1.0095707698664274 0.9119253213506652 1.0365729685358709 0.9387767300814335 1.111278749590214 1.1858037387350013 1.0 20.45995488751659 4.725840124559729 3.225192835851652 1.0235852556098672 1.3392310947206616 0.5563570517508916 0.07460298011431321 0.24679026211225227 4.141356572654433 0.01899620899078889 0.1922630850260997 53191.2412003653 -4.725840124559729 0.31564583911079436 S(ph)NSAPLIHGLSDTSPVFQAEAPSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR 246.52 4.1803999999999995e-39 2971020000.0 139134.0 187829.0 182722.0 175338.0 172413.0 199811.0 195126.0 197453.0 217023.0 206109.0 True False 138384.9180032405 194080.77471997167 208447.66935190494 197535.77282218964 194368.77357808547 185998.53587450113 185687.00992629337 212187.94550601795 163540.58960921026 192954.94716120744 0.7171877168177736 1.0058346654248964 1.0802919148673282 1.0237403898079642 1.0073272359049537 0.9639480024272482 0.9623335014632096 1.099676108997309 0.8475584172121668 1.0 17.55790450796845 4.738441343367037 9.580291492469039 1.0071164710688054 0.7162838971144904 0.6192187612469873 0.06601281790005004 0.04599968948714024 114.15001204978203 0.015069645577069609 0.0873735156600074 54757.21398399545 -4.738441343367037 -0.29083257395431505 S(ph)NSDNNLNASAPDWAVCSTATSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SNSDNNLNASAPDWAVCSTATSHR 24 0 Q9UPX8;Q9UPX8-3;A0A2R8Y2H5;A0A087X158 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 S(0.617)NS(0.383)DNNLNASAPDWAVCSTATSHR 200.8 9.6079e-25 1347100000.0 146530.0 147110.0 99511.0 122920.0 116890.0 154780.0 122090.0 134950.0 184400.0 151840.0 True False 145741.09876101362 152006.4674201272 113521.28383488246 138481.65939672853 131775.2486386897 144080.42291292918 116184.04027090796 145020.65426221496 138957.09083340663 142149.4412032358 1.0252667722600661 1.0693427011281633 0.7986052064220027 0.9741977050668577 0.9270191111781173 1.0135841667286796 0.8173372986025021 1.020198553259693 0.9775422939210506 1.0 17.117048902154995 1.6035721061708856 24.99999999999999 0.9991540938673966 0.9462977894213351 0.08090154584035414 0.08149219392161842 1.1161801077549287 6462.663195758961 0.04113315671624379 0.02008143374712035 40.13951366036233 -1.6035721061708856 -0.052856304446061486 S(ph)NSELEDEILCLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SNSELEDEILCLEK 14 0 Q96PC5;Q96PC5-11;Q96PC5-10;Q96PC5-9;Q96PC5-13;Q96PC5-6;G3V599;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5-8;Q96PC5-5;Q86UF2;A4D2H0;A0A5F9ZHA4;G3V5K6;A0A2R8YE69;Q8IX94;P0CG41;A4FU28 Q96PC5 MIA2;CTAGE6;CTAGE15;CTAGE5;CTAGE4;CTAGE8;CTAGE9 Melanoma inhibitory activity protein 2;cTAGE family member 6;cTAGE family member 15;cTAGE family member 4;cTAGE family member 8;cTAGE family member 9 1 S(0.5)NS(0.5)ELEDEILCLEK;S(0.984)NS(0.016)ELEDEILCLEK;S(0.94)NS(0.06)ELEDEILCLEK 258.38 2.3346e-24 72282000.0 142728.0 143806.0 142595.0 120369.0 144821.0 184353.0 152237.0 162940.0 216133.0 165536.0 True False 141959.56830657166 148592.49577743723 162671.13654204117 135607.70305828843 163263.09592868233 171609.11103028295 144872.71470818407 175099.41019255525 162869.91818382146 154971.3507575002 0.9160374973353016 0.9588384888633731 1.0496852208289107 0.8750501456910441 1.0535050196739726 1.1073602326588583 0.9348354647491038 1.129882454638674 1.050967920120158 1.0 17.241642006450277 3.192737611044637 24.602937336105455 1.052908010426024 0.9576684079936463 0.33700719612905927 0.06531614663999845 118.60893470466306 63682.11516179247 0.018195128643717508 0.021747431467190912 1558.6105480534331 -3.192737611044637 -0.09523960243237772 S(ph)NSFSDER ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 S(0.549)NS(0.314)FS(0.137)DER;S(0.714)NS(0.277)FS(0.008)DER 80.763 0.025811 48264000.0 145982.0 131804.0 126807.0 115533.0 110359.0 161544.0 145686.0 141485.0 175971.0 149796.0 True False 145196.0491321248 136191.0164627993 144660.3233737974 130159.46595413476 124412.5645009594 150376.8435136725 138638.61160543436 152043.32914627268 132605.3049405933 140235.8910331922 1.0353701043462447 0.9711566380004993 1.0315499285383227 0.9281466035205462 0.8871663565179074 1.0723135311920973 0.9886100525622233 1.0841969771510618 0.9455874952098189 1.0 17.097496104733594 2.7081648764176802 24.99996172481025 1.0258628629738904 0.9717234015298681 0.1477289103029915 0.05544421078461069 1191.2734806482313 979800.4772102638 0.017846288770060222 0.016827341261611884 510.69884589887835 -2.7081648764176802 -0.05413946144402226 S(ph)NSGRELTDEEILASVMIK ddPTM_BT-474_Trastuzumab_2h_R1 10 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 S(0.457)NS(0.457)GRELT(0.086)DEEILASVMIK;S(0.484)NS(0.484)GRELT(0.032)DEEILASVMIK;S(0.606)NS(0.355)GRELT(0.039)DEEILASVMIK;S(0.612)NS(0.375)GRELT(0.014)DEEILASVMIK;S(0.619)NS(0.379)GRELT(0.002)DEEILASVMIK;S(0.444)NS(0.299)GRELT(0.256)DEEILASVMIK;S(0.607)NS(0.391)GRELT(0.002)DEEILASVMIK;S(0.496)NS(0.496)GRELT(0.008)DEEILASVMIK;S(0.499)NS(0.499)GRELT(0.002)DEEILASVMIK;S(0.47)NS(0.47)GRELT(0.06)DEEILASVMIK 206.94 2.0644999999999998e-16 1365398000.0 1720134.0 1833318.0 1721197.0 1875814.0 1792821.0 2170110.0 2314575.0 1963417.0 3155760.0 2327798.0 True False 1710872.9896688526 1894338.8813658678 1963526.5766874833 2113291.8600684567 2021126.1274674004 2020095.4035894617 2202610.164714854 2109937.146569511 2378065.2330175187 2179235.9387118663 0.7850792836502778 0.8692674564120857 0.9010160587972464 0.9697398168449862 0.9274471348256473 0.9269741599358573 1.0107258812998487 0.9682004179027456 1.0912380760493419 1.0 21.055390970083902 6.896129586740379 0.29272945191058386 1.0245185247761448 7.09210760568675e-18 0.776870047984394 0.03771792632018152 12.74296853180813 0.3237706300900382 0.039264963961988884 5.972863644796413 7872806.669970248 -6.896129586740379 -1.0245185247761448 S(ph)NSLDKHQQSSTLGNSVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSLDKHQQSSTLGNSVVR 19 1 A0A0A0MSY4;Q9BZ29-5;X6RGR3;Q6ZSL5;A0A088AWN3;Q9BZ29-3;Q9BZ29;Q9BZ29-4 A0A0A0MSY4 DOCK9 Dedicator of cytokinesis protein 9 1 S(0.835)NS(0.165)LDKHQQSSTLGNSVVR;S(0.5)NS(0.5)LDKHQQSSTLGNSVVR 144.29 8.2605e-08 437150000.0 364700.0 267600.0 297610.0 284150.0 276300.0 394790.0 361130.0 345070.0 470270.0 376150.0 True False 362736.49572197907 276506.90423238376 339510.9011275075 320123.3608654437 311485.16724159475 367499.0965356978 343660.7622494303 370820.8756299555 354378.25979515194 352143.78496178344 1.0300806409556402 0.7852102352520344 0.9641257793726307 0.9090700291648913 0.8845397265080195 1.043605232378532 0.9759103438009739 1.0530382516056587 1.0063453479197737 1.0 18.425805095048663 2.7384889488777704 24.999999744089873 1.018508817011485 0.9098602913460928 0.40289508469464297 0.06140385897257705 5.842431080409801 2037739.1240505842 0.017806072337518925 0.017805498871024086 547.6321656547425 -2.7384889488777704 -0.10864852566539229 S(ph)NSLPHSAVSNAGSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SNSLPHSAVSNAGSK 15 0 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 S(0.672)NS(0.328)LPHSAVSNAGSK;S(0.593)NS(0.407)LPHSAVSNAGSK;S(0.711)NS(0.289)LPHSAVSNAGSK 248.65 1.3099e-18 2375110000.0 1924800.0 1703690.0 1776210.0 1827060.0 1876080.0 2402060.0 2407620.0 2140770.0 2848010.0 2347540.0 True False 1914437.090665386 1760396.2917476476 2026284.928905916 2058365.608667319 2114987.6676026443 2236011.2460410274 2291154.222598439 2300525.1280097957 2146156.096878799 2197717.987369889 0.871102253186034 0.8010110040799163 0.9219949695779053 0.9365922381745897 0.9623562621579796 1.017424100312782 1.0425151160274069 1.0467790413650575 0.9765384408793977 1.0 21.067574839903415 3.584357046010286 0.9704675853551468 1.0251008833669317 0.8306003188819111 0.8224956993445567 0.03114080256441513 0.22688416377873316 0.419352536574456 0.012023435242504751 0.031258119779571006 3840.228319861476 -3.584357046010286 -0.19450056448502062 S(ph)NSPDKFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNSPDKFK 8 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 S(0.933)NS(0.067)PDKFK 99.752 0.0039912 1113300000.0 3525400.0 2105000.0 1793300.0 1673100.0 1668500.0 2536800.0 2741900.0 2493500.0 4150600.0 2302300.0 True False 3506419.6381087606 2175063.6525006266 2045781.052356971 1884914.2884531904 1880973.5850256972 2361436.986984872 2609263.82192483 2679577.6317364415 3127740.2451905464 2155365.242901804 1.626833154917173 1.0091392443409277 0.949157484604652 0.8745219839935338 0.8726936611881666 1.0956087348822745 1.2105900986006133 1.243212787512933 1.4511416361987994 1.0 21.039500934914255 2.246123316127836 3.293204062328707 1.250613236782994 1.0415131559948232 0.09450425498186577 0.22639666017772925 0.4780010337795474 10.86778888403945 0.09020109619188409 0.06763371898931599 176.24764232831924 -2.246123316127836 -0.20910008078817088 S(ph)NTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPK 39 0 Q9BRQ0;Q5T171 Q9BRQ0 PYGO2 Pygopus homolog 2 1 S(0.473)NT(0.473)QGPAY(0.004)S(0.037)HLT(0.013)EFAPPPTPMVDHLVASNPFEDDFGAPK;S(0.44)NT(0.44)QGPAYS(0.066)HLT(0.054)EFAPPPTPMVDHLVASNPFEDDFGAPK 218.55 2.8897e-39 172044000.0 131872.0 97985.0 92814.0 99380.0 80252.0 115104.0 91374.0 95449.0 146450.0 134215.0 True False 131162.0158043565 101246.37149181671 105881.4044462499 111961.49781033913 90471.61650912941 107147.13140567117 86953.8905374226 102571.88906020134 110359.3598294598 125649.28379275739 1.0438739628686755 0.8057855041880685 0.8426741581821341 0.8910635574732402 0.7200328866048366 0.8527476494207227 0.692036499633711 0.8163348485883988 0.8783126851043864 1.0 16.93904292224446 4.740866141903927 24.077160147319802 0.8200698040626538 1.0438740970867482 0.357413348741892 0.08306860170671244 120.74890663485094 1260870.1429997596 0.018385335881104532 0.12222623523344255 55063.795280686885 -4.740866141903927 0.22380429302409433 S(ph)PAGGESATVAAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPAGGESATVAAK 13 0 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 S(1)PAGGESATVAAK;S(1)PAGGESATVAAK;S(1)PAGGESATVAAK;S(1)PAGGESATVAAK 243.3 5.8992e-17 2245620000.0 1512080.0 1311180.0 1108280.0 1011370.0 1168150.0 1410170.0 1301760.0 1340960.0 1599820.0 1395470.0 True False 1503939.1292878813 1354821.8336749522 1264316.190657551 1139409.338301898 1316906.9783324965 1312688.2670831203 1238788.8955938814 1441029.2444569075 1205565.7974897 1306409.9098780274 1.151200031411501 1.0370572233346307 0.9677790876338296 0.8721683215096544 1.0080350496234747 1.0048058095377423 0.9482390528632323 1.1030452490914193 0.9228082153803144 1.0 20.317176209057838 4.652336314588274 2.799474180164212 0.9852600864978471 1.1661565823572853 0.4495390616062297 0.057915578034406265 0.3439292673331293 4.095034220718685 0.01500526943622455 0.1282566118663188 44909.30297903696 -4.652336314588274 0.18089649585943812 S(ph)PAGS(ph)PELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPAGSPELR 9 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 S(1)PAGS(1)PELR;S(1)PAGS(1)PELR 91.784 0.015378 942030000.0 631090.0 678790.0 502330.0 560500.0 523820.0 598690.0 578060.0 537350.0 610580.0 607170.0 True False 627692.2815606903 701383.1148127798 573053.6976693682 631459.2425306399 590525.3720756129 557303.9694646696 550097.0293963547 577449.7856080122 460110.740352827 568419.8907756108 1.1042757154472587 1.2339172611566078 1.0081520843463705 1.11090278995869 1.0388893521474751 0.9804441725363032 0.9677652705744436 1.0158859585650322 0.8094557347826171 1.0 19.11659751427655 3.278145381962636 0.6018406157428151 0.9380778057364465 1.1715464110293805 0.5395980689873754 0.07122191014242721 0.7525070366251354 0.5626609287567371 0.04695160772650994 0.09731819494700691 1897.340958034628 -3.278145381962636 0.233468605292934 S(ph)PAKEEAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAKEEAAK 9 1 Q9HCM7;A0A3B3IRR3 Q9HCM7 FBRSL1 Fibrosin-1-like protein 1 S(1)PAKEEAAK 101.39 0.0045369 0.0 715180.0 431720.0 357930.0 330900.0 329930.0 359600.0 597080.0 512160.0 912520.0 555510.0 True False 711329.5503439686 446089.53921974875 408323.4328166683 372791.9060720587 371944.6298516802 334741.698407348 568196.959332899 550379.9798957835 687641.6731415404 520056.8762039613 1.3677918375700737 0.8577706778456222 0.7851514930388648 0.7168291068337943 0.7151999076843416 0.6436636331985841 1.0925669582148887 1.058307283451685 1.3222432095520527 1.0 18.988309887171788 2.12572746594132 8.281229012998807 1.1185884222808862 0.8337245282066685 0.2985092902685472 0.2028082156789759 0.3129923729501062 21.562586561313964 0.0779361880614433 0.05751916265143164 133.57570220570847 -2.12572746594132 -0.28486389407421764 S(ph)PAKSPNPSTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPAKSPNPSTPR 12 1 O76021;J3QSV6;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 S(0.999)PAKS(0.001)PNPSTPR;S(0.988)PAKS(0.012)PNPSTPR 115.8 0.00055137 314930000.0 243050.0 238830.0 216612.0 216690.0 191238.0 275640.0 281090.0 242960.0 424210.0 325550.0 True False 241741.44580539363 246779.31217421612 247109.086774744 244122.93178227352 215591.02574356852 256585.65558676686 267492.6028319232 261090.90892588155 319669.12962277356 304773.1202826222 0.7931849291079933 0.809714819815385 0.8107968529035461 0.8009988924085346 0.7073820209067212 0.8418907000355866 0.8776778036851542 0.8566730185515268 1.0488757319751099 1.0 18.217376143196542 1.4796454610535614 1.3442708844225304 1.0270428591799947 0.7944969191821162 0.7848622141980225 0.04444878257343014 0.1768998773964134 0.6110022200958674 0.03945474479811281 0.013239899935685017 30.174873704450476 -1.4796454610535614 -0.23254593999787854 S(ph)PALSDANK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPALSDANK 9 0 P52701;P52701-3;P52701-2;A0A087WWJ1;F8WAX8;F8W7G9 P52701 MSH6 DNA mismatch repair protein Msh6 1 S(1)PALSDANK;S(1)PALSDANK 133.91 0.00027658 810380000.0 926040.0 738700.0 641750.0 627700.0 556840.0 842680.0 820160.0 809300.0 1300600.0 912520.0 True False 921054.3035327173 763287.1829464204 732102.8218090037 707166.7556404684 627750.2733507394 784427.515055351 780485.7274845436 869694.0755421306 980084.5571471181 854282.1923523225 1.0781616563919392 0.8934836635710018 0.8569800803094235 0.8277905848572567 0.7348277641398417 0.918229973746003 0.9136158221154353 1.0180407403171667 1.147260900345342 1.0 19.704353183930053 1.7030986956033078 2.3746419224795954 1.0768099783125868 0.876650939858819 0.4364543633740332 0.08774978595577695 0.23831948440242895 2.8913174954359104 0.05973688425488993 0.02517286880635585 50.47759974118475 -1.7030986956033078 -0.2001590384537678 S(ph)PAMSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPAMSR 6 0 Q9BQI6 Q9BQI6 ANKRD32 Ankyrin repeat domain-containing protein 32 1 S(1)PAMSR;S(1)PAMSR 91.064 0.050683 230040000.0 62525.0 104618.0 97815.0 96951.0 86131.0 63494.0 92185.0 74045.0 77974.0 75016.0 True False 62188.37234718053 108100.14688708363 111586.50177677858 109224.98665939 97099.27231156632 59104.809228799044 87725.65936910182 79570.61389289142 58758.35249806958 70228.41465557127 0.885515822223492 1.5392650883157586 1.5889081694929923 1.5552819637902093 1.3826208777142512 0.8416081940432956 1.2491476534013215 1.1330259166911014 0.8366749098102878 1.0 16.09976724752189 2.8501113451525435 7.001133881314755 1.0500661689013957 1.4224227134967198 0.4162522464821471 0.22040260135791945 0.26305651046766093 14.67598596224902 0.06756560138957408 0.07178780578056954 708.1273119888334 -2.8501113451525435 0.3723565445953241 S(ph)PAPGLASGDRPPSVSSVHSEGDCNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAPGLASGDRPPSVSSVHSEGDCNR 26 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(1)PAPGLASGDRPPSVSSVHSEGDCNR 142.37 1.6979e-07 575530000.0 76937.0 69540.0 94707.0 72901.0 81111.0 92787.0 111130.0 45942.0 103060.0 81950.0 True False 76522.77974050424 71854.59686218227 108040.92239199889 82130.25912529217 91440.00506743742 86372.85308710397 105754.21734217378 49370.425328749 77662.24393324771 76719.88083907508 0.997430899312992 0.9365837912718079 1.4082519577763908 1.0705212029404179 1.1918684448850847 1.1258210015768484 1.3784460583821827 0.6435154068123055 1.0122831668123846 1.0 16.227312859120705 1.7381481511872077 24.999999999974165 0.8621682575915504 1.1561483083776292 0.35215020701484545 0.16889086046831134 0.07105451779857658 3449.078323081301 0.07534820706996266 0.04178438010619285 54.72025986723935 -1.7381481511872077 0.2939800507860788 S(ph)PAPGLASGDRPPSVSSVHSEGDCNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPAPGLASGDRPPSVSSVHSEGDCNRR 27 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.987)PAPGLAS(0.013)GDRPPSVSSVHSEGDCNRR;S(0.998)PAPGLAS(0.002)GDRPPSVSSVHSEGDCNRR 105.49 0.001069 670200000.0 15523.0 29670.6 18548.1 27628.7 27996.0 29837.0 39711.0 12259.0 29870.0 22670.0 True False 15439.425892767427 30658.167984743533 21159.511257024675 31126.49058716558 31561.124654707466 27774.438418743153 37790.02721924828 13173.828829940665 22508.93873749378 21223.181191236527 0.727479342217682 1.4445604411747142 0.9969999815937989 1.4666270012347784 1.4871062151483532 1.3086840360299883 1.7806014507783845 0.6207282834385074 1.0605826965652145 1.0 14.37335330087467 1.7077002213942905 13.92479995923144 0.8829361151486049 1.3207157253793795 0.30617852430998793 0.29100946624107377 0.15245944907485134 58.63496252619061 0.13026490958897458 0.07169583638886656 51.01527374507449 -1.7077002213942905 0.4377796102307746 S(ph)PAQSDSTTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAQSDSTTQR 11 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.999)PAQS(0.001)DSTTQR 74.613 0.04232 31784000.0 28194.0 34302.0 29937.0 30905.0 32535.0 26556.0 26465.0 24437.0 24133.0 22059.0 True False 28042.206636647894 35443.72133400314 34151.869382931276 34817.569831238965 36678.13939994672 24720.2462260999 25184.786843882197 26260.613028571654 18185.745515632312 20651.17573433994 1.35789879459588 1.71630525012023 1.653749395301577 1.6859848697787383 1.7760799613436167 1.1970381998635398 1.2195328327967068 1.2716279870159657 0.880615503425891 1.0 14.333936300555674 2.6765556396114554 6.166342978203439 1.1472141121187789 1.6454546557956862 0.7545951172468383 0.1489135802718399 0.11788384052483966 9.129678573440671 0.04812955750725371 0.04550874654178949 474.8491223115852 -2.6765556396114554 0.4982405436769073 S(ph)PARTPPSEEDS(ph)AEAER ddPTM_BT-474_Trastuzumab_2h_R1 1 SPARTPPSEEDSAEAER 17 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 S(0.983)PART(0.022)PPS(0.434)EEDS(0.561)AEAER 108.13 0.008017100000000001 238290000.0 198510.0 200600.0 158360.0 169350.0 169410.0 179990.0 174850.0 183070.0 208230.0 179750.0 True False 197441.24421653437 207276.84973473923 180655.71151020454 190789.69263615317 190983.359328261 167547.71495088594 166391.8375081354 196731.6130106238 156914.5066390467 168278.20110828252 1.173302560380273 1.2317510430323777 1.0735538549877737 1.133775446728154 1.1349263188603276 0.995659056535038 0.988790208192603 1.169085548306 0.932470787099016 1.0 17.360488775347907 5.65217262304945 0.2529999075919808 1.0002382533625696 1.5019309501324207 0.46418854242087715 0.0690973297419631 15.17538519800965 0.5688739017212959 0.09479514309813233 2.567630807533978 448923.792372103 -5.65217262304945 0.5016926967698512 S(ph)PASPLNNQGIPTPAQLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPASPLNNQGIPTPAQLTK 19 0 A0A2U3U043;J3QLL6;J3KSG1;J3QRK1;Q719H9 A0A2U3U043 KCTD1 BTB/POZ domain-containing protein KCTD1 1 S(0.998)PAS(0.002)PLNNQGIPTPAQLTK 148.83 9.6092e-08 253580000.0 464280.0 502930.0 440550.0 407070.0 440340.0 612140.0 514170.0 536370.0 672400.0 559630.0 True False 461780.36806635757 519669.7210223949 502575.6106707547 458605.0202621721 496414.68890033953 569824.2026225631 489297.6327798571 576396.6530316728 506696.0296983865 523913.9342766523 0.8814050130274161 0.9918990258197328 0.959271318799034 0.8753441934987859 0.9475119030489618 1.0876294088442167 0.9339275036756016 1.1001743136064541 0.9671360056455878 1.0 18.998970307591883 2.9161315759838615 8.214761662873231 1.0229787460571726 0.931161525903851 0.37303928642156636 0.056382325760636495 0.32699436555398126 29.28467622341067 0.01634431494944245 0.01737071698852434 824.387837760512 -2.9161315759838615 -0.09181722015332161 S(ph)PATSAGPELAGLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPATSAGPELAGLPR 15 0 A1L020 A1L020 MEX3A RNA-binding protein MEX3A 1 S(1)PATSAGPELAGLPR;S(1)PATSAGPELAGLPR 124.16 0.00062962 0.0 43773.0 35241.0 35804.0 39062.0 36676.0 42606.0 42177.0 36044.0 43982.0 45498.0 True False 43537.33103163747 36413.97538136563 40844.89198605313 44007.24519488293 41346.47120431676 39660.74750373597 40136.73737821348 38733.78630772343 33143.225428605685 42594.278687202444 1.0221403524957067 0.8549029706261065 0.9589290685259352 1.0331726830745702 0.9707048100978738 0.9311285159913305 0.9423034880567813 0.9093659407210737 0.7781144897885933 1.0 15.378372038546892 1.6495619579580894 3.4052695372848674 0.8777870787067376 0.9577768160413057 0.14975847680479737 0.06825930068431585 0.31218879521235365 8.55137890353941 0.03962145618976859 0.01744709497783675 44.62332812287542 -1.6495619579580894 0.07998973733456816 S(ph)PCPQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPCPQEK 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(1)PCPQEK;S(1)PCPQEK 81.263 0.029029000000000006 5882200000.0 2759640.0 2014690.0 1754780.0 1439960.0 1535300.0 1397870.0 1969420.0 2006070.0 2549610.0 2162510.0 True False 2744782.404864826 2081747.738744179 2001837.7711788141 1622258.7883575766 1730811.3545639531 1301238.537132033 1874151.6306849965 2155773.1300170566 1921292.7785236544 2024496.760382041 1.3557850319043534 1.0282791158190514 0.9888075942393946 0.8013145884468797 0.8549341191523236 0.6427466630702225 0.925737036166621 1.0648439514470955 0.9490224020714604 1.0 20.949131903726787 4.83780138552393 1.5259022185453301 0.8975821893883706 1.6114894046880315 0.6066713464672902 0.11093466535778698 1.069163532913773 1.937421322498079 0.03324467783409592 1.2281711167391038 68833.74292442654 -4.83780138552393 0.7139072152996608 S(ph)PDALESAQSEEEVDELSLIDHNEIMSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDALESAQSEEEVDELSLIDHNEIMSR 28 0 Q13905-2;Q13905;Q13905-4;Q13905-3;H0Y6R4 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 S(1)PDALESAQSEEEVDELSLIDHNEIMSR;S(1)PDALESAQSEEEVDELSLIDHNEIMSR 131.9 1.3119e-05 80585000.0 10298.3 8993.5 6199.0 6271.599999999999 9293.4 7613.5 6864.299999999999 6794.8 8688.7 8578.900000000001 True False 10242.855097048687 9292.843210814444 7071.765317326089 7065.583916958367 10476.859403702616 7087.196665251231 6532.247584827524 7301.862479295285 6547.486307615076 8031.387257234194 1.2753531574290027 1.1570657612660884 0.8805160417281914 0.8797463863536291 1.304489382486903 0.8824374218622701 0.8133398845814171 0.9091657823769117 0.815237280672463 1.0 12.971433489873272 2.532493411488133 24.992575842351453 0.8742866122569561 1.0797884842351553 0.36391059030175 0.1409453438172179 352.61361589732377 159153.76481599765 0.04675493039788078 0.04408078445088477 340.79515469103575 -2.532493411488133 0.20550187197819914 S(ph)PDASSAFSPASPATPNGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPDASSAFSPASPATPNGTK 20 0 Q53GS7-2;Q53GS7 Q53GS7-2 GLE1 Nucleoporin GLE1 1 S(0.952)PDAS(0.048)SAFSPASPATPNGTK 256.14 3.7051999999999996e-36 280850000.0 339800.0 424620.0 368520.0 442040.0 407450.0 405700.0 397280.0 325620.0 387340.0 405430.0 True False 337970.5545553295 438753.2200117893 420404.4127667379 498002.21867661714 459336.3423546428 377654.913915075 378062.0486430195 349919.4178648565 291885.24709008523 379555.11029391404 0.8904386883201679 1.1559670996710711 1.1076241667282298 1.3120682745938577 1.210196701077082 0.9949936219344601 0.9960662849467674 0.92191992249529 0.7690194102881651 1.0 18.53394985039464 2.2867340447210167 1.7896134445595848 0.8985822043506989 1.1410111859439278 0.42927122780405547 0.11608963465913716 0.33240306874408304 2.150569589305024 0.058852036905078585 0.03897469881418904 193.5236491858578 -2.2867340447210167 0.2424289815932289 S(ph)PDEVTLTSIVPTR ddPTM_BT-474_Trastuzumab_2h_R1 5 SPDEVTLTSIVPTR 14 0 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR 272.77 5.707399999999999e-33 442652000.0 131539.0 133999.0 119208.0 112731.0 120910.0 135398.0 117133.0 110510.0 130263.0 123607.0 True False 130830.80863935694 138459.07571089407 135991.4502254894 127002.73304143013 136307.1718102829 126038.2549526087 111466.82929848669 118756.81735840945 98161.42908477233 115718.29543472313 1.1305974405158672 1.1965184519071925 1.1751940323231116 1.0975164520382394 1.1779223959203062 1.0891817450223942 0.9632602077289092 1.026257921552261 0.8482792519195493 1.0 16.82025745164185 2.3677205120768723 2.2599497775297817 0.9633229443185954 1.1567887797365122 0.7672327779238364 0.05080317396179727 0.14469788605606118 1.515084337287951 0.02076005246835404 0.01584699707041696 233.19568607499 -2.3677205120768723 0.19346583541791673 S(ph)PDKPGGSPSASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 S(1)PDKPGGSPSASR 62.646 0.04546 227400000.0 369550.0 301540.0 252790.0 234260.0 236220.0 355280.0 325930.0 323030.0 425540.0 304700.0 True False 367560.3838608647 311576.57661522104 288380.63470993115 263917.2919807809 266301.21681436646 330720.3298391616 310163.52072648914 347136.1389131035 320671.36894385976 285253.7851332053 1.288538147492853 1.0922785002475033 1.0109616409656605 0.9252017176828666 0.9335589243452509 1.1593898033104968 1.0873248205335881 1.2169378883123354 1.1241616611471623 1.0 18.12188650470773 2.6804962983419727 24.994888947859913 1.1353763975194267 1.0433359522396712 0.07519823015077043 0.10842727024216288 559.708731781526 240936.33220108258 0.0367413930574691 0.03464012393324674 479.17736867877477 -2.6804962983419727 -0.09204044527975541 S(ph)PDLEASLDTLENNCHVGSDIDFRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDLEASLDTLENNCHVGSDIDFRPK 26 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(0.978)PDLEAS(0.021)LDTLENNCHVGSDIDFRPK;S(0.457)PDLEAS(0.408)LDT(0.135)LENNCHVGSDIDFRPK 128.65 5.1994e-05 370000000.0 235367.0 179186.0 177744.0 153765.0 168607.0 244990.0 225444.0 187804.0 281280.0 221991.0 True False 234099.81022373182 185150.09768977566 202768.8102214566 173231.63323411916 190078.10203801494 228054.4179444273 214538.41244028628 201818.88812938897 211962.31295889712 207823.34432394328 1.1264365463142114 0.8909013484124004 0.975678699046398 0.833552331657677 0.914613816154031 1.0973474548121454 1.0323114236188786 0.9711078838901038 1.019915802281106 1.0 17.664998192436332 2.767215312979802 24.791895687772033 1.0187936074744395 0.9402044740905802 0.19008124851277142 0.0770603646172278 1069.8698704899975 925643.7065437898 0.023375995362424812 0.024790740409293067 585.0800811817611 -2.767215312979802 -0.07858913338385931 S(ph)PDNSIK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPDNSIK 7 0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 S(1)PDNSIK;S(1)PDNSIK;S(1)PDNSIK;S(1)PDNSIK;S(1)PDNSIK;S(1)PDNSIK 183.43 0.00067423 8551450000.0 11590910.0 10031440.0 8570100.0 7398600.0 7477250.0 7356780.0 10130470.0 10397530.0 15405450.0 10974860.0 True False 11528505.828431156 10365330.416266456 9776695.58735543 8335262.001404455 8429433.466367042 6848223.114597354 9640420.463946465 11173446.48618754 11608983.269953905 10274435.038749639 1.1220573963387608 1.0088467518821238 0.951555540570649 0.8112623195307901 0.8204279295723566 0.6665303823294948 0.9382920255554673 1.0874998424776947 1.1298901814232187 1.0 23.29255573070216 1.805248260718118 4.516338078391543 1.0807566959550208 0.8907359350778864 0.29876226262170225 0.11937942187304075 0.2719792216917481 9.720452027237249 0.06424924148900625 0.03517179119618441 63.862844834549634 -1.805248260718118 -0.19002076087713438 S(ph)PDPFGAVAAQK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPDPFGAVAAQK 12 0 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 S(1)PDPFGAVAAQK;S(1)PDPFGAVAAQK;S(1)PDPFGAVAAQK;S(1)PDPFGAVAAQK;S(1)PDPFGAVAAQK;S(1)PDPFGAVAAQK 198.52 1.913e-07 5551670000.0 7058150.0 6035250.0 5761800.0 4733710.0 4855560.0 6320180.0 5719510.0 5454750.0 6664510.0 5474620.0 True False 7020149.704634184 6236129.647864338 6573011.357536605 5332997.200641773 5473886.784841097 5883280.832703423 5442835.450650018 5861811.143659264 5022130.810358713 5125225.064542005 1.3697251566964135 1.2167523512299854 1.2824824812106033 1.0405391243278668 1.0680285677035433 1.14790682528381 1.0619700368487905 1.143717801626548 0.9798849313181325 1.0 22.28918392855089 7.999999999995518 0.37104552615211733 1.0489356904042033 5.420973960395375 0.7193537064323015 0.06371416025102206 35.98523358808209 0.49784459861781205 0.048633252463225536 112.20448670832769 99999999.99896803 -7.999999999995518 4.3720382699911715 S(ph)PDPGIVPQEAPVGNSLSELSEENFDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPDPGIVPQEAPVGNSLSELSEENFDGK 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 S(1)PDPGIVPQEAPVGNSLSELSEENFDGK;S(1)PDPGIVPQEAPVGNSLSELSEENFDGK;S(1)PDPGIVPQEAPVGNSLSELSEENFDGK;S(1)PDPGIVPQEAPVGNSLSELSEENFDGK 166.35 4.0155e-12 432514000.0 389297.0 369982.0 351748.0 332447.0 294806.0 426026.0 390724.0 371800.0 518262.0 429673.0 True False 387201.0682069626 382296.6272111577 401271.0609515755 374534.7561134409 332347.7966479386 396575.8253773322 371823.1874093718 399545.60396214505 390543.27445500455 402250.90127843764 0.9625859556221167 0.9503934633735783 0.9975641065719232 0.931097369634452 0.8262201416868619 0.9858917012166565 0.9243563811234227 0.9932746022253907 0.970894715745263 1.0 18.617736127873975 1.7106150956192 7.6651695231571715 0.9860992196648665 0.939478261944322 0.19746865833699434 0.04450086781483635 0.21347346495355027 29.56435898492594 0.02246274881082566 0.011808283245795513 51.35882693259176 -1.7106150956192 -0.04662095772054442 S(ph)PDPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDPYR 6 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-6 P18583-7 SON Protein SON 1 S(1)PDPYR;S(1)PDPYR 111.65 0.029024 1512750000.0 1078860.0 1170530.0 1071710.0 1043770.0 964430.0 1048410.0 1128890.0 1063090.0 1339620.0 1119120.0 True False 1073051.5376326155 1209490.3834496732 1222597.4525296884 1175911.174979851 1087244.4438755382 975935.8843916786 1074281.2779214128 1142423.1740616374 1009488.6009883293 1047696.8034731629 1.0242004500494803 1.1544278644739177 1.1669382291486639 1.1223773624980544 1.0377472187289996 0.931506024602162 1.0253742059345043 1.090413915814625 0.9635312407576584 1.0 19.998789840194934 3.1830700813947486 4.536172072509462 1.013929186390069 1.1236837568344198 0.5015962069594906 0.05323651376631192 0.18621723952110927 7.852668270327726 0.016397323172531873 0.020284143429762237 1524.298707557394 -3.1830700813947486 0.10975457044435077 S(ph)PDREASGSGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDREASGSGGR 12 1 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 S(1)PDREASGSGGR;S(0.983)PDREAS(0.007)GS(0.01)GGR 86.288 0.010117 47106000.0 139541.0 166907.0 159443.0 173738.0 175163.0 130814.0 166191.0 148732.0 201443.0 169777.0 True False 138789.72676046262 172462.39859758783 181891.18849659982 195733.21298624162 197468.96977755838 121771.13608303342 158151.7064187278 159831.13708579305 151800.07184790625 158941.68650659747 0.8732116149698816 1.0850671235983715 1.1443894455533523 1.231478143263045 1.2423988578311813 0.7661371837650587 0.995029748927215 1.0055960811713085 0.9550677055487593 1.0 17.278138032281877 2.753302726222611 24.996251979086065 0.9540014868114969 1.121698339521882 0.3541992875953901 0.1148816596748637 981.1189990803555 1663552.474555217 0.03665165802514036 0.03873099434789151 566.6341253645745 -2.753302726222611 0.16769685271038515 S(ph)PDTLAPVASER ddPTM_BT-474_Trastuzumab_2h_R1 1 SPDTLAPVASER 12 0 O43310;O43310-2 O43310 CTIF CBP80/20-dependent translation initiation factor 1 S(0.997)PDT(0.003)LAPVASER 98.406 0.0045911 406800000.0 77206.0 83260.0 71591.0 58741.0 76630.0 71154.0 73186.0 67268.0 74456.0 62593.0 True False 76790.33147439292 86031.2587682672 81670.39051987293 66177.60457714956 86388.37627840528 66235.29145849947 69645.71358232999 72287.87973998275 56107.31645928483 58598.2611514366 1.3104540982187545 1.4681537826853768 1.3937340275133863 1.1293441695501085 1.4742481189868444 1.130328616532261 1.1885286732714346 1.2336181709072869 0.9574911500238144 1.0 15.838570234206879 1.9846999405190555 0.4380604146574729 0.9751684969239389 1.4029020350728307 0.5688481354703725 0.11346378626128495 0.7597739275803768 0.3489437920245509 0.11688164927339045 0.10503587364268209 96.5383652897598 -1.9846999405190555 0.4277335381488918 S(ph)PDVISSASTALSQDIPEIASEALSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDVISSASTALSQDIPEIASEALSR 26 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 S(0.889)PDVIS(0.028)S(0.028)AS(0.028)T(0.028)ALSQDIPEIASEALSR;S(0.975)PDVIS(0.021)S(0.003)AS(0.001)T(0.001)ALSQDIPEIASEALSR 146.5 1.3333e-07 709510000.0 60500.0 49520.0 62358.0 35364.0 62551.0 69835.0 53762.0 56164.0 73595.0 72398.0 True False 60174.27472218191 51168.24326452787 71137.46437454764 39841.078774047404 70516.49908117617 65007.47082390748 51161.32666921577 60355.242875013246 55458.49837247593 67777.49765695383 0.8878208373337335 0.7549444141993654 1.0495734843236586 0.5878216244526666 1.0404116634415363 0.9591305827331301 0.7548423656500504 0.8904908702958131 0.818243521665129 1.0 16.048518753099813 S(ph)PEAQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPEAQPK 7 0 P55265-5;P55265;P55265-4 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 S(1)PEAQPK;S(1)PEAQPK 90.657 0.017809000000000002 2146410000.0 3781900.0 2798800.0 2591600.0 2353700.0 2411100.0 2257840.0 3218100.0 3229600.0 4777500.0 3665400.0 True False 3761538.670608592 2891956.366089672 2956474.7534089815 2651678.1786697004 2718139.2932906533 2101760.8351836684 3062428.208664169 3470609.1515765013 3600149.140220173 3431471.0338931778 1.0961883791106743 0.8427745236737729 0.8615764854802551 0.7727526044890541 0.7921207162884853 0.6124955782590752 0.8924534633736043 1.0114056383681371 1.0491562087107644 1.0 21.710395745822648 1.8164735931060532 3.7570805394921725 1.0230334148267202 0.8230961510341821 0.35822691537834683 0.11271675789154346 0.24837819424498317 6.096404172491946 0.05968421241632557 0.03162663231987705 65.53504366151692 -1.8164735931060532 -0.19993726379253807 S(ph)PEASASASPHTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPEASASASPHTPR 14 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 S(0.995)PEAS(0.005)ASASPHTPR 173.77 1.7053e-06 305920000.0 179450.0 269710.0 293460.0 289890.0 279160.0 297150.0 268830.0 96758.0 198850.0 189010.0 True False 178483.86113876943 278687.1343068623 334776.61719995405 326590.04427690874 314709.37128904613 276608.71991586045 255825.66586967162 103978.57328716856 149846.08195348634 176947.21998039776 1.0086841780195355 1.5749732283883031 1.8919574844806302 1.84569186400944 1.7785493963901196 1.5632272716491573 1.44577386351711 0.5876247917242629 0.8468405548845939 1.0 17.432959570181307 1.8731493153916288 4.341245957322317 0.7858386925479848 1.6313361640802657 0.6706993560353947 0.2502348062855851 0.1305337121844347 3.7601077401128666 0.12446368491229033 0.07071905792211952 74.67054401214511 -1.8731493153916288 0.8454974715322809 S(ph)PEASQTDS(ph)PVESPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPEASQTDSPVESPR 15 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 2 S(1)PEAS(0.003)QT(0.073)DS(0.923)PVESPR 248.46 3.1605e-18 169640000.0 112670.0 117680.0 102050.0 97942.0 108290.0 127450.0 141940.0 116850.0 134310.0 122380.0 True False 112063.39723881373 121596.90766093765 116417.75296549869 110341.44715778048 122080.08961488337 118639.68148502914 135073.81993654402 125569.94035227713 101211.100161794 114569.60362521074 0.9781250322328467 1.0613365483808008 1.016131236225044 0.9630953033471099 1.0655539144068398 1.0355249362050056 1.1789673321940461 1.096014443438694 0.8834027260221992 1.0 16.805864808968643 3.1993287988742747 24.995665596581105 1.0601092233929552 1.0095379404744693 0.030230489733483412 0.07533859209513515 401.59418155292434 255865.5010859762 0.022297642668069932 0.026651151627840618 1582.4456355011366 -3.1993287988742747 -0.050571282918485894 S(ph)PEAVGPELEAEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPEAVGPELEAEEK 14 0 Q96N64-3;Q96N64-2;Q96N64 Q96N64-3 PWWP2A PWWP domain-containing protein 2A 1 S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK 254.45 3.1054e-24 1462560000.0 1447020.0 1284750.0 1155650.0 1033350.0 1018960.0 1458510.0 1428860.0 1403360.0 2086250.0 1461830.0 True False 1439229.4050990366 1327512.1271022253 1318355.4749101307 1164172.004048239 1148718.5161509041 1357686.636663241 1359740.5830247316 1508085.849317688 1572121.641817756 1368534.7578643726 1.0516571806659734 0.9700244144137311 0.9633335706923896 0.850670395734014 0.839378400548265 0.9920731854716937 0.99357402156642 1.101971170736714 1.1487626695511082 1.0 20.384200645869768 2.005768460918696 2.1649937914206525 1.0935721765095738 0.9358590713879337 0.4496074420342331 0.0683413870711646 0.278293636727212 2.439588594999926 0.039958091993023956 0.02136890501878722 101.33709746749288 -2.005768460918696 -0.15771310512164016 S(ph)PEAVGSECPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPEAVGSECPSR 12 0 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 S(1)PEAVGSECPSR 120.59 0.00020675 0.0 36667.0 34686.0 27214.0 25161.0 33241.0 36096.0 36199.0 31408.0 44024.0 33706.0 True False 36469.5889460867 35840.50254187022 31045.49465167158 28346.380020184548 37474.04431515684 33600.76848084435 34447.916076391164 33751.82444659242 33174.87509137684 31554.854222841564 1.155752097237943 1.1358158173941557 0.9838579646867367 0.8983207407646807 1.1875841368340265 1.0648367520114168 1.0916835753104321 1.0696238432361553 1.0513398305406396 1.0 14.945574337991172 0.8575357575278146 2.6753658378958396 1.0000657617620212 1.071044827825973 0.07260161133629306 0.07928148977455857 1.7413568210916612 23.841655301353097 0.07723463453283007 0.020525555251040065 7.203370575687381 -0.8575357575278146 0.07097906606395177 S(ph)PEDQLGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPEDQLGK 8 0 Q9UK61-3;Q9UK61;Q9UK61-2 Q9UK61-3 FAM208A Protein FAM208A 1 S(1)PEDQLGK;S(1)PEDQLGK;S(1)PEDQLGK;S(1)PEDQLGK 130.01 0.0011186 1425690000.0 1694040.0 1388720.0 1199470.0 1145550.0 1190390.0 1565570.0 1631060.0 1443960.0 2101920.0 1554540.0 True False 1684919.4768655377 1434942.7057010331 1368344.9500198613 1290576.5125441134 1341979.1105056864 1457345.8308553724 1552159.3965457191 1551715.62748031 1583929.9802849987 1455327.926291348 1.157759324497582 0.9859926960638603 0.9402313563148975 0.8867943019776477 0.9221145875524347 1.0013865634868746 1.0665358428880902 1.0662309156910013 1.0883663754885615 1.0 20.472912838835192 2.365184763295558 4.134993319376167 1.0614567187177373 0.9709422130951196 0.2011168543350801 0.07084775299438476 0.32255492569471045 10.02220299840873 0.02673821541466297 0.021962936195905475 231.83807563597776 -2.365184763295558 -0.09051450562261765 S(ph)PEIHR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPEIHR 6 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 E9PK91;Q9NYF8;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR 86.794 0.055776 3880690000.0 994770.0 1107850.0 908440.0 924470.0 921630.0 928280.0 926970.0 865190.0 964560.0 968030.0 True False 989414.2688493377 1144724.1175405325 1036340.4556979693 1041507.8072119543 1038994.1175710113 864110.1885360763 882128.9197307187 929754.8711458006 726857.1124418142 906249.4966278203 1.0917680754924288 1.2631445554453635 1.1435487242246436 1.1492506325106209 1.1464769044696161 0.9535014273127372 0.9733841762264642 1.0259369793919273 0.8020496730166138 1.0 19.78954876311354 2.7664605256790735 4.904172012262063 0.9598687504156906 1.1650474618227828 0.6960662870327087 0.06854450607345072 0.11241255197771033 7.345067360976504 0.021062693183912785 0.021704132020693784 584.0641173502811 -2.7664605256790735 0.2051787114070922 S(ph)PEIHRR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPEIHRR 7 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 E9PK91;Q9NYF8;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 S(1)PEIHRR;S(1)PEIHRR;S(1)PEIHRR;S(1)PEIHRR 100.76 0.0058555 1420490000.0 407732.0 560389.0 491402.0 530180.0 517846.0 491663.0 453000.0 442501.0 632087.0 530872.0 True False 405536.8162152836 579041.2091026965 560587.1302572468 597300.7336394202 583790.6185862857 457675.49406021135 431086.65937194956 475522.6715945492 476317.62838186236 496991.2944576143 0.8159837420449416 1.1650932633229047 1.1279616695681502 1.2018333928590792 1.1746495866157955 0.9208923761123224 0.8673927776590352 0.9568028190785622 0.9584023577348293 1.0 18.92286105549434 2.7273251460851444 24.47875646954815 0.9335314988417754 1.1084140714483075 0.34914113973448146 0.10598901439054405 571.6333525474765 1245417.1905297588 0.03399854214243747 0.032330360766180025 533.734340314634 -2.7273251460851444 0.17488257260653206 S(ph)PEIMSTISGTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPEIMSTISGTR 12 0 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 S(1)PEIMSTISGTR;S(0.998)PEIMS(0.001)T(0.001)ISGTR;S(0.999)PEIMS(0.001)TISGTR;S(0.988)PEIMS(0.008)T(0.004)ISGTR 132.14 0.00019532 1011565000.0 388371.0 327741.0 259236.0 266828.0 306389.0 439803.0 385516.0 323913.0 496586.0 388231.0 True False 386280.05368807423 338649.6610613817 295734.1754802945 300608.3974415091 345405.8230401192 409400.453794902 366867.1182658641 348085.0328568868 374209.034211486 363453.7651987189 1.062803830019136 0.9317544444097986 0.8136775672652653 0.8270884118565976 0.9503432241271955 1.1264168733292987 1.0093914368042904 0.9577147527047101 1.0295918492050473 1.0 18.47141232562169 2.9942796448233064 24.89703666714316 1.0177239466604566 0.9018022669743613 0.3471017187536458 0.07490422609252742 294.81953324829016 1283170.2521253866 0.023380652941083237 0.02712931986507268 986.9147614181397 -2.9942796448233064 -0.11592167968609535 S(ph)PENSPPVKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPENSPPVKPK 11 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 S(0.981)PENS(0.019)PPVKPK;S(0.996)PENS(0.004)PPVKPK 117.2 0.00053667 305280000.0 558930.0 428350.0 396524.0 330008.0 347010.0 580060.0 529180.0 482490.0 695820.0 508060.0 True False 555920.7829829614 442607.37080695713 452351.1325516065 371786.97896351735 391199.6666105884 539961.8175143666 503581.54173608805 518495.85383457615 524344.4845103084 475635.1758279507 1.1687966139494528 0.9305606340752632 0.9510464228474838 0.7816641784669057 0.8224784172651167 1.1352436593328927 1.0587558854525223 1.090112506780048 1.1024089704836655 1.0 18.859495888670825 2.727682490540683 24.931699092386058 1.0818321219068383 0.9237172222129265 0.34316784491882524 0.1009256043052155 790.9386954983804 1812758.126716736 0.03359447093738313 0.03196225269881521 534.1736862039704 -2.727682490540683 -0.1581148996939118 S(ph)PENSTLEEILGQYQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPENSTLEEILGQYQR 16 0 Q86SQ7-3;Q86SQ7-4;Q86SQ7;Q86SQ7-2 Q86SQ7-3 SDCCAG8 Serologically defined colon cancer antigen 8 1 S(0.945)PENS(0.05)T(0.005)LEEILGQYQR;S(0.906)PENS(0.076)T(0.018)LEEILGQYQR;S(0.991)PENS(0.006)T(0.003)LEEILGQYQR;S(1)PENSTLEEILGQYQR 270.94 4.0541999999999996e-35 629250000.0 95724.0 91396.0 81087.0 94220.0 99695.0 100504.0 93960.0 99964.0 101186.0 96394.0 True False 95208.63261993621 94438.0606099512 92503.34477916131 106148.24233940565 112390.56731143944 93556.39504096807 89414.79583794334 107423.82128690672 76250.06612293415 90242.0523929445 1.055036206461324 1.0464972604871157 1.0250580779830936 1.1762613939363902 1.245434521170383 1.0367272525406646 0.9908329151092552 1.1903964774553992 0.8449504870624562 1.0 16.461512259159512 1.2353685607934641 24.99935591825808 0.9224752396999513 1.0968923413971694 0.3954588342600852 0.0857016284052942 86.94457757230151 680870.5532025412 0.07245461872642578 0.021051635416805953 17.193668961676426 -1.2353685607934641 0.17441710169721814 S(ph)PENTEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPENTEGK 8 0 Q15651;A0A087WZE9;Q15651-2 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 S(1)PENTEGK 144.17 0.00061854 129510000.0 358740.0 342010.0 323400.0 334690.0 331710.0 339200.0 363130.0 348990.0 469480.0 385600.0 True False 356808.583699761 353393.5961005894 368931.9089568083 377061.7196834613 373951.30230079324 315751.9023909132 345564.0146086887 375033.40593531216 353782.94470969477 360990.677871231 0.9884149524410661 0.9789549087099929 1.0219984381103882 1.0445192709878315 1.035902933854113 0.8746815963584109 0.9572657572391796 1.0389005282543344 0.9800334645646798 1.0 18.46160205625121 S(ph)PEPDGPAPAFLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SPEPDGPAPAFLR 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR 227.48 9.4672e-12 2456050000.0 986304.0 1006503.0 879365.0 811653.0 813574.0 903967.0 850268.0 820622.0 1060606.0 810818.0 True False 980993.8488526762 1040003.8439110889 1003171.9484223983 914408.1865793434 917177.8264691014 841477.8889994292 809137.2885008134 881860.9806740825 799233.8626922773 759070.9010637859 1.2923612899373176 1.370101057033796 1.3215787181625873 1.2046413389024173 1.2082900624747168 1.1085629653569324 1.065957458475701 1.1617636500598492 1.0529106853815708 1.0 19.533875121389585 3.259505633231182 0.8645991667423523 1.0791880672339178 1.3508004147011479 0.8454293515969389 0.04604941455096399 0.2396336189674922 0.38893867392786263 0.022416378785064087 0.0394707024073541 1817.630632418886 -3.259505633231182 0.27161234746723006 S(ph)PEPDTLPLAAGSDHPLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPEPDTLPLAAGSDHPLPR 19 0 H3BVB1;H3BME1;H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2 H3BVB1 FBXL19 F-box/LRR-repeat protein 19 1 S(1)PEPDTLPLAAGSDHPLPR;S(1)PEPDTLPLAAGSDHPLPR 247.55 5.9238999999999995e-25 739200000.0 163332.0 192382.0 169104.0 179183.0 168065.0 168730.0 172523.0 181507.0 186817.0 199519.0 True False 162452.63865989106 198785.3185726253 192912.37332168283 201867.5494279532 189467.08155070056 157066.09224769703 164177.40338813854 195051.97401387081 140778.45356954724 186785.52660319026 0.8697281936892663 1.064243692686787 1.0328015067864895 1.0807451364087937 1.0143563315438622 0.8408900577257808 0.8789621250308075 1.0442563594782261 0.7536903748898004 1.0 17.51102314411624 2.847793886654019 8.652779729550307 0.9157975234959281 1.0207450878502173 0.2506583039870057 0.09235489604424894 0.4839003418118505 34.985374329771815 0.027803532093573453 0.029513820891050993 704.3587055541199 -2.847793886654019 0.1049475643542892 S(ph)PEPEATLTFPFLDK ddPTM_BT-474_Trastuzumab_2h_R1 8 SPEPEATLTFPFLDK 15 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK 245.56 4.3631e-18 4053934000.0 1684664.0 1278246.0 1196338.0 1099403.0 1100103.0 1385236.0 1343504.0 1254488.0 1791439.0 1327043.0 True False 1675593.9562077676 1320791.6453939748 1364771.9916436926 1238587.3070756702 1240194.5962286647 1289477.895814798 1278513.5788363172 1348104.2647209906 1349962.8625027488 1242349.9796013278 1.3487294109711891 1.0631397489279302 1.0985406802048245 0.9969713264479104 0.9982650755358368 1.0379344926850593 1.0291090271089265 1.0851243907562984 1.0866204247340627 1.0 20.244640218494084 4.904067220870947 2.154134829093663 1.0422161124508684 1.5420830577380216 0.8611782492902953 0.03668404044443551 0.45657886986875984 1.5805820429511823 0.00966985165043557 0.5150118089763626 80180.21581451694 -4.904067220870947 0.49986694528715314 S(ph)PEPEVLSTQEDLFDQSNK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPEPEVLSTQEDLFDQSNK 19 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.999)PEPEVLS(0.001)TQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK;S(0.996)PEPEVLS(0.003)T(0.001)QEDLFDQSNK 296.78 6.4747e-50 789782000.0 994072.0 776283.0 666791.0 605264.0 632483.0 899516.0 781899.0 836130.0 1119722.0 894976.0 True False 988720.0268037813 802121.1103820174 760669.3769487303 681890.3603408844 713025.9610295532 837334.5761529034 744075.558225757 898526.26638211 843781.5166060935 837857.8654524965 1.180056985285696 0.9573474731884519 0.9078740062169381 0.8138496855580872 0.8510106432485108 0.9993754438298309 0.8880689540628814 1.072408941219223 1.0070699952794475 1.0 19.67634599974712 1.7357578668560276 14.931501675717477 1.0293499499809982 0.9354713343188532 0.13496645777310046 0.09619380759305526 0.1344978336810132 302.69980802079453 0.046222697505328716 0.0254977568031164 54.419915970944615 -1.7357578668560276 -0.09387861566214495 S(ph)PEPGPS(ph)SSIGSPQASSPPRPNHYLLIDTQGVPYTVLVDEESQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPEPGPSSSIGSPQASSPPRPNHYLLIDTQGVPYTVLVDEESQR 44 1 K7EM32;Q9P0T4 K7EM32 ZNF581 Zinc finger protein 581 2 S(0.728)PEPGPS(0.211)S(0.211)S(0.211)IGS(0.204)PQAS(0.202)S(0.202)PPRPNHY(0.031)LLIDTQGVPYTVLVDEESQR 83.566 0.00020345 123710000.0 17502.0 21245.0 17703.0 19976.0 19308.0 21887.0 21920.0 19393.0 25202.0 19876.0 True False 17407.771176654995 21952.126982126305 20195.42852276556 22504.959551814576 21766.75935251793 20374.003206456124 20859.64585746827 20840.204135658634 18991.304789498434 18607.49666330028 0.9355246163224356 1.1797463882082895 1.0853382853265356 1.209456594782107 1.169784401759356 1.0949352067674927 1.1210345074848205 1.1199896747401783 1.0206265320447505 1.0 14.183596356796633 1.1969215307052947 4.287089903022027 1.0022340538831038 1.12074267186764 0.255828780988581 0.07073812816966996 0.25503503727080473 9.29674643321644 0.06092135105335447 0.016481002801074195 15.736984994256748 -1.1969215307052947 0.11850861798453627 S(ph)PEPGQTWTR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPEPGQTWTR 10 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(0.999)PEPGQT(0.001)WTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR 163.71 6.6908e-06 10894680000.0 911061.0 986472.0 880385.0 780073.0 865302.0 1014792.0 867063.0 839725.0 914193.0 865623.0 True False 906155.948804393 1019306.1241850831 1004335.5555564013 878830.1618173141 975493.0806532261 944641.8176034177 825119.8501876824 902389.5435371506 688902.3847085927 810378.1990428645 1.1181889516211705 1.2578153328766528 1.2393417749177105 1.0844691563214535 1.2037503992646623 1.1656801956409137 1.0181910756758132 1.1135412386500037 0.8500998490855917 1.0 19.62823583742605 1.845398564903433 1.005511355870774 0.9492156181627973 1.1882420080170153 0.5926665947862173 0.07525587867792043 0.3582599272410002 0.6680996244870339 0.06112107415574633 0.026242672666936594 70.04845565243005 -1.845398564903433 0.23902638985421798 S(ph)PERPTGDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPERPTGDLR 10 1 Q5T200;Q5T200-2;Q5T9K0 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.992)PERPT(0.008)GDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR 116.51 0.00065442 4857690000.0 3462660.0 4220270.0 3744480.0 3602490.0 3689140.0 3968490.0 3798580.0 3399540.0 4367360.0 3891350.0 True False 3444017.423297693 4360739.135742908 4271670.236396387 4058564.8646283755 4158930.1117540887 3694157.627120621 3614828.173415229 3653230.9373143376 3291082.647625739 3643000.7114476557 0.9453792892423316 1.1970184694281978 1.172569146904973 1.1140719385189422 1.1416220970490596 1.0140425214610065 0.9922666668870259 1.0028081866233336 0.9033988484503833 1.0 21.796695846151206 2.6067965896394907 3.390543944998093 0.9798802169674581 1.122119952335159 0.4825237773180736 0.06858456439287193 0.21209588891483924 4.5226491600597045 0.02295908322977081 0.021324353852604443 404.38644499204685 -2.6067965896394907 0.14223973536770096 S(ph)PESCSKPEK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPESCSKPEK 10 1 Q03111 Q03111 MLLT1 Protein ENL 1 S(0.991)PES(0.007)CS(0.002)KPEK;S(0.999)PESCSKPEK;S(0.999)PES(0.001)CSKPEK;S(1)PESCSKPEK;S(0.999)PES(0.001)CSKPEK;S(1)PESCSKPEK 138.63 0.00015707 9243060000.0 11523130.0 8736660.0 7768300.0 7405000.0 7590030.0 9915190.0 10812970.0 10451450.0 15404920.0 10857370.0 True False 11461090.74842009 9027454.446677499 8862009.116725955 8342472.240748248 8556575.330867602 9229776.253146702 10289905.331543267 11231390.270387748 11608583.881352276 10164443.351137875 1.1275669854697021 0.8881405636115731 0.8718636929324697 0.8207505273581299 0.8418144540999112 0.9080454220951962 1.0123432219622088 1.1049685538490834 1.1420776800386943 1.0 23.277027873339836 2.0713297935934145 2.8402170223910503 1.090774368106118 0.8991763601917097 0.45023264059582047 0.08589255163832771 0.22751292617357455 3.615981291358416 0.0407215037914839 0.025384114438553335 117.85005609902807 -2.0713297935934145 -0.19159800791440829 S(ph)PESDRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPESDRPR 8 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 S(1)PESDRPR;S(1)PESDRPR 143.96 0.00035916 871560000.0 210473.0 234830.0 177389.0 172840.0 182188.0 178212.0 184247.0 167308.0 182235.0 191613.0 True False 209339.83675374842 242646.17459226743 202363.82930717187 194721.5262783156 205388.5618871215 165892.62390592406 175334.2687181094 179793.37253280942 137325.62607389284 179384.09429185747 1.166992188355078 1.3526627070819486 1.1281035261572658 1.0855005124451234 1.1449652919224533 0.9247900409498803 0.9774237198134245 1.0022815748663092 0.7655395904302663 1.0 17.45269244884354 3.2476034715761797 0.7128011522676063 0.9203331861636999 1.268124773745461 0.6583195128885997 0.08827775514197655 0.4622671234637489 0.5081065728495863 0.050460436943844625 0.09352231610027374 1768.4935148542822 -3.2476034715761797 0.3477915875817612 S(ph)PETALEAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPETALEAFK 10 0 Q68DA7-5;Q68DA7-3 Q68DA7-5 FMN1 Formin-1 1 S(1)PETALEAFK;S(1)PETALEAFK 127.87 0.00036158 60282000.0 128934.0 117999.0 109174.0 102478.0 97876.0 148794.0 135374.0 114026.0 159596.0 131604.0 True False 128239.83366991398 121926.52538309824 124544.7502425808 115451.70429269382 110339.92844349738 138508.22100340066 128825.4424410999 122535.19913229586 120265.70427683489 123204.92004814692 1.0408661733622284 0.9896238343034589 1.0108748107941656 0.9370705670485948 0.8955805368842246 1.1242101447675419 1.045619301491828 0.994564170687426 0.9761436818418987 1.0 16.91070034400317 2.7512263897242684 24.998731175548205 1.0264695210539463 0.9755342860912566 0.20338673155202436 0.052686820169975085 1449.088345099414 2860094.352746277 0.01703646195635636 0.017976346499201802 563.9315463606412 -2.7512263897242684 -0.0509352349626897 S(ph)PEYTEVELK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPEYTEVELK 10 0 Q5T481 Q5T481 RBM20 RNA-binding protein 20 1 S(1)PEYTEVELK 137.4 9.6806e-05 103120000.0 123350.0 122250.0 111600.0 107210.0 118090.0 136650.0 119580.0 128780.0 141540.0 129170.0 True False 122685.89730547322 126319.01734831455 127312.30995541078 120782.77500751105 133128.06152573248 127203.70713949975 113795.45856003894 138390.2175315898 106659.36353883064 120926.26001199924 1.0145513248594586 1.0445954198515706 1.0528094554712752 0.9988134504079267 1.1009028271652699 1.0519113642221103 0.9410318201253166 1.1444182389983586 0.8820198650669182 1.0 16.88376804470843 1.2240338981474181 24.99998834609087 0.9410099726537592 1.044509677585494 0.3316741204327074 0.05825684347971983 289.73889651854535 498616.47589186934 0.05104008325700819 0.01298317520039197 16.750736160629522 -1.2240338981474181 0.10349970493173488 S(ph)PFEGAVTESQSLFSDNFR ddPTM_BT-474_Trastuzumab_2h_R1 7 SPFEGAVTESQSLFSDNFR 19 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6;O95628-5 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR 390.22 5.674699999999998e-127 2063566400.0 239547.5 259676.8 243040.8 235084.6 220672.6 245433.6 257274.0 237661.7 286918.0 255313.9 True False 238257.80287622934 268319.98531005933 277258.8320914965 264846.286256233 248773.94758102606 228467.3529205498 244828.6737378783 255397.2228756594 216210.90340422612 239019.5483167728 0.9968130412516139 1.1225859441189079 1.1599839178176554 1.1080528271488155 1.0408100481025333 0.9558521657724909 1.0243039762312942 1.068520230559474 0.9045741443611199 1.0 17.866769088903787 3.0889886657359926 4.047244290899138 1.0032208560266602 1.102837910983806 0.43078806934560143 0.05633764827873909 0.2287488039206516 7.098109397105474 0.017154240267456388 0.020705361194039158 1227.4071977356027 -3.0889886657359926 0.09961705495714579 S(ph)PFEHSVEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPFEHSVEHK 10 0 O14646;O14646-2 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 S(1)PFEHSVEHK 107.09 0.001501 246540000.0 204500.0 194340.0 162240.0 164730.0 166480.0 217610.0 186440.0 111410.0 247790.0 195900.0 True False 203398.99472208574 200808.48941898925 185081.98178463997 185584.8011098526 187680.24119573156 202567.13289884038 177421.184930036 119723.97992851699 186725.4747158882 183397.4942815719 1.109060925389773 1.094935839803166 1.00918489922486 1.0119265905831978 1.0233522651491864 1.1045250846657542 0.9674133533015428 0.6528114268818942 1.0181462699223514 1.0 17.484614402288834 1.9927185739001787 23.150359798158654 0.8413351213570908 1.052929004971269 0.32682189000603445 0.10199262707396321 104.36175559015626 331804.9529698557 0.038097308699034604 0.02694405982675876 98.33736656982545 -1.9927185739001787 0.2115938836141782 S(ph)PFLKPDER ddPTM_BT-474_Trastuzumab_2h_R1 6 SPFLKPDER 9 1 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER 108.56 0.0015691 4223470000.0 7179160.0 6463070.0 5781030.0 5427880.0 5207420.0 7196580.0 6825350.0 6395180.0 10248030.0 7509270.0 True False 7140508.200239654 6678189.3779416755 6594948.774386454 6115049.051466925 5870554.070203485 6699097.363527112 6495181.745130975 6872420.80566604 7722540.323066567 7030021.959590509 1.015716343602372 0.9499528474205041 0.938112115765084 0.8698477880463292 0.8350690942287524 0.9529269470329403 0.9239205485368516 0.9775816982037352 1.0985087055853802 1.0 22.74509776515724 1.4961594480707123 3.55408818812542 1.048851595502863 0.9236689393458933 0.4724910380335239 0.05121191957719551 0.1800758039215121 4.700117448224119 0.036879995369368784 0.013919265221153353 31.3443629865482 -1.4961594480707123 -0.12518265615696966 S(ph)PGAAGLTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGAAGLTSR 10 0 Q53T59;F6TR53 Q53T59 HS1BP3 HCLS1-binding protein 3 1 S(1)PGAAGLTSR;S(1)PGAAGLTSR 72.152 0.041011 0.0 153568.0 185658.0 173930.0 182253.0 171888.0 177196.0 168766.0 145701.0 177627.0 168525.0 True False 152741.20695100876 191837.5142973691 198417.83217333863 205326.21111317907 193776.91794000432 164946.8575945172 160602.1438312724 156573.94847468694 133853.20592985628 157769.59021848853 0.9681283112891643 1.215934667965489 1.2576430723979066 1.3014308449989085 1.2282273007849658 1.0454920835256603 1.0179537362609687 0.9924215956817419 0.8484094161903353 1.0 17.26745962992231 2.4903436523402833 2.196548416568152 0.9637877084360401 1.204798230031132 0.5717707456888355 0.09386049431658867 0.23181403325071903 2.259093843450847 0.038396211910129374 0.03209771008824219 309.2741716272549 -2.4903436523402833 0.24101052159509184 S(ph)PGAFDMSGVR ddPTM_BT-474_Trastuzumab_2h_R1 9 SPGAFDMSGVR 11 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR 181.87 6.3324e-06 5929639000.0 1517297.0 1807067.0 1693341.0 1495946.0 1544286.0 1645037.0 1480515.0 1251141.0 1572878.0 1266619.0 True False 1509128.0415395426 1867214.1326999306 1931748.6940161767 1685332.610217199 1740941.6683997577 1531319.4641905695 1408896.8333334683 1344507.494585267 1185263.2923853952 1185782.2910129183 1.2726855958106913 1.5746685937643072 1.629092210818935 1.4212833358959636 1.4681798518955882 1.2914001801144175 1.1881580995192307 1.1338569523051003 0.9995623154170401 1.0 20.177407725491886 2.1945279767952943 0.9316811224043524 1.0066554391426026 1.501865662715994 0.8082479841150307 0.09267341642800209 0.23425721845525557 0.38387411038397995 0.07062394884659684 0.03901823987026459 156.50491348023888 -2.1945279767952943 0.4952102235733915 S(ph)PGAPGPLTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGAPGPLTLK 11 0 Q15942;Q15942-2;H0Y2Y8;C9JJK5 Q15942 ZYX Zyxin 1 S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK 136.38 0.0001054 6448600000.0 9437300.0 9942300.0 9023800.0 8873000.0 8886200.0 10182900.0 8691500.0 7910900.0 10807400.0 9081000.0 True False 9386490.625382608 10273223.445252724 10294272.60372433 9996320.89023082 10017804.897366121 9478980.090968248 8271058.940245695 8501251.528736252 8144061.081740545 8501442.805364754 1.1041056018702322 1.2084094053740977 1.2108853566865414 1.1758381628966246 1.1783652641930946 1.1149848688021082 0.9729006157668111 0.9999775006863093 0.9579622269059216 1.0 23.01927627545728 2.384152726665225 2.9150042095385618 0.9827163615646309 1.1785993798847123 0.8991427650641214 0.030449519764775865 0.07327953615437686 1.2650980437213555 0.011535045972622806 0.009304483424519793 242.18805904030503 -2.384152726665225 0.19588301832008137 S(ph)PGASNFSTLPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGASNFSTLPK 12 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 S(1)PGASNFSTLPK;S(0.993)PGAS(0.007)NFSTLPK;S(1)PGASNFSTLPK;S(0.927)PGAS(0.073)NFSTLPK;S(0.999)PGAS(0.001)NFSTLPK;S(0.998)PGAS(0.002)NFSTLPK 164.65 5.9505e-05 2790393000.0 1887760.0 1873100.0 1821150.0 1545100.0 1574800.0 1874650.0 1749590.0 1552830.0 2036070.0 1795010.0 True False 1877596.5099098515 1935445.0011871404 2077552.0902804318 1740709.5015773275 1775341.4454291114 1745059.8579514301 1664955.6476171506 1668710.059710968 1534307.8304402044 1680450.9250146237 1.1173170736262423 1.1517414596146553 1.236306314784142 1.0358585756154584 1.0564672963678852 1.0384473786024095 0.9907790955589267 0.9930132649940054 0.9130334052610626 1.0 20.680416980894915 3.1255155576125535 0.9132140555599022 0.9729847697746088 1.1674403107411548 0.7239503209697631 0.046364961661302086 0.3004881507183711 0.5512107060639644 0.022833361902817005 0.03334816887635199 1335.105415822224 -3.1255155576125535 0.19445554096654605 S(ph)PGDFTSAAQLASTPFHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGDFTSAAQLASTPFHK 18 0 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 S(1)PGDFTSAAQLASTPFHK 158.37 2.9431e-11 195740000.0 400950.0 358780.0 334190.0 304840.0 297770.0 442080.0 441110.0 414410.0 593750.0 418380.0 True False 398791.32974973303 370721.7754129101 381241.04716844705 343432.7127440506 335689.24447893404 411520.0501443831 419771.8240961599 445335.3785313417 447428.2683423812 391678.6302068614 1.0181595292526302 0.9464947710246966 0.9733516657957524 0.8768226966139813 0.8570527432187017 1.0506573971805473 1.071725112688587 1.1369917687266777 1.1423351539655768 1.0 18.57931089214184 2.5393494275672084 4.528981396098198 1.0988411053952043 0.9342250989578724 0.6257349940705847 0.056635824078520094 0.13725706082811215 5.632487944279348 0.019685672552522748 0.018057283163266418 346.21782805471946 -2.5393494275672084 -0.16461600643733187 S(ph)PGDGHNAPVEGPEGEYVELLEVTLPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGDGHNAPVEGPEGEYVELLEVTLPVR 28 0 Q8TER5;Q8TER5-4;Q8TER5-3;G3V485;G3V3N2;G3V5C1 Q8TER5 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 S(0.999)PGDGHNAPVEGPEGEY(0.001)VELLEVTLPVR 66.461 0.0090141 11168000.0 1168.3 2339.1 1875.5 3062.7 2581.3 2062.8 2661.5 3089.7 3169.3 993.55 True False 1162.0100026103328 2416.9555294841903 2139.554097861764 3450.437505974293 2910.013254436221 1920.2034913088899 2532.7530770826543 3320.2691031786985 2388.2684814442255 930.1407883790502 1.2492839977863561 2.5984835410736067 2.3002475803586147 3.709586278854996 3.128572890032573 2.064422413573772 2.7229781864490272 3.569641439942558 2.567641921828032 1.0 9.861305292364777 4.946163573558104 1.691433939631286 2.808174807958173 7.282708395827416e-12 0.20876434325142001 0.7500169064158897 2.298442910078197 4.192740937138614 0.18665725661412916 12.318747068107427 88341.25680750271 -4.946163573558104 -2.8081748079508904 S(ph)PGEPGGAAPER ddPTM_BT-474_Trastuzumab_2h_R1 3 SPGEPGGAAPER 12 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 S(1)PGEPGGAAPER;S(1)PGEPGGAAPER;S(1)PGEPGGAAPER 92.538 0.0080544 815361000.0 45687.4 55129.8 47805.4 48646.0 48068.6 52778.0 47464.5 44532.8 57648.7 51125.0 True False 45441.424114747344 56964.76206633219 54535.98478801426 54804.57861221326 54189.851285086166 49129.581086048376 45168.46080300193 47856.063668976385 43441.95033800325 47862.1587296854 0.9494227866191783 1.1901837187924644 1.1394384673708748 1.1450502874669126 1.132206584979548 1.0264806768019197 0.9437196733666599 0.9998726538695542 0.9076471160307147 1.0 15.546597847850359 2.547869075093019 3.319909958227991 0.9666077970481183 1.1188335976718164 0.5393015962363468 0.06448082198045824 0.18285978306242087 3.9364243588951435 0.021662536907642714 0.019567537623699796 353.0767132139439 -2.547869075093019 0.15222580062369817 S(ph)PGETSKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGETSKPR 9 1 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 1 S(1)PGETSKPR;S(1)PGETSKPR 115.33 0.00090479 618260000.0 688650.0 490000.0 483900.0 391870.0 428620.0 471280.0 531020.0 518130.0 682540.0 608510.0 True False 684942.3849162082 506309.3537887451 552028.9138658 441480.7018206636 483202.2163702221 438701.52287378995 505332.53390660643 556795.49161083 514337.1625674256 569674.3708283791 1.2023401788643129 0.888769759911275 0.9690253627929227 0.7749702714880686 0.8482077501004381 0.7700917319412879 0.88705506124804 0.977392559895539 0.9028616853861863 1.0 19.119777976466818 4.738762184089181 8.873851451011845 0.8878961563449601 1.2038528699796927 0.6106794169844879 0.0745581551356692 0.05814595131362056 85.40461760195807 0.018527934021581958 0.10887564702449318 54797.681537302546 -4.738762184089181 0.31595671363473254 S(ph)PGETSKPRPFAGGGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGETSKPRPFAGGGYR 17 2 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 1 S(0.998)PGET(0.001)SKPRPFAGGGYR;S(0.999)PGET(0.001)S(0.001)KPRPFAGGGYR 79.568 0.010446 1275170000.0 498690.0 506090.0 425230.0 441070.0 438660.0 585540.0 533900.0 483560.0 758210.0 595120.0 True False 496005.1084496682 522934.8997121343 485098.68783458165 496909.4167760736 494520.7508584798 545062.9980128985 508073.2173039377 519645.7026679266 571359.3049934764 557138.9320921337 0.8902718512007418 0.9386077145038878 0.8706960865451802 0.8918949801445576 0.8876076008572692 0.9783250938255412 0.911932712000672 0.9327039859099151 1.0255239260482896 1.0 19.087677607472706 1.3453364047630654 3.7145929391844272 1.013132260255014 0.9113151668108084 0.6502968977336803 0.0295893540091379 0.14108450109536785 3.1216793659072675 0.023698153478795652 0.007704659198965276 22.14809638185881 -1.3453364047630654 -0.10181709344420553 S(ph)PGEYINIDFGEPGAR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGEYINIDFGEPGAR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR 244.08 5.1568e-20 776610000.0 463019.0 491171.0 397911.0 406902.0 462011.0 462798.0 422783.0 437774.0 574808.0 460185.0 True False 460526.15715024696 507519.3298158599 453933.410095587 458415.7514793982 520845.3622962587 430805.8635693095 402331.3711020987 470442.918851329 433154.2704325855 430815.5993157999 1.0689635145097622 1.1780430667363881 1.0536605703611979 1.0640648857827608 1.2089751697093598 0.9999774015924543 0.9338830157057023 1.091982090709954 1.0054284736218924 1.0 18.71671096352065 2.6951379463774403 24.974368478631195 1.0124773431386576 1.1120495122385547 0.46067784840420234 0.058461637175389235 457.095214396218 262895.90770376014 0.018871557523581443 0.017792385125686573 495.6075872660236 -2.6951379463774403 0.09957216909989719 S(ph)PGGGSEANGLALVSGFK ddPTM_BT-474_Trastuzumab_2h_R1 7 SPGGGSEANGLALVSGFK 18 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 S(1)PGGGSEANGLALVSGFK;S(1)PGGGSEANGLALVSGFK;S(1)PGGGSEANGLALVSGFK;S(1)PGGGSEANGLALVSGFK;S(1)PGGGSEANGLALVSGFK;S(1)PGGGSEANGLALVSGFK;S(1)PGGGSEANGLALVSGFK 287.38 5.7868e-40 5323906000.0 2189041.0 2113951.0 1888488.0 1778376.0 1839151.0 2255770.0 2321249.0 2037399.0 2539340.0 2363469.0 True False 2177255.4464813164 2184312.581124634 2154370.695368046 2003518.2192590013 2073355.9783479776 2099833.9294114118 2208961.3178377002 2189440.0590824955 1913553.6824127033 2212630.3849523854 0.9840122694184956 0.9872017468347472 0.9736694885957677 0.9054915962848968 0.9370548250843961 0.9490215553812884 0.9983417623026251 0.9895191144315824 0.8648320548367964 1.0 21.07733104155113 3.9876582647738847 24.225699285309155 0.9524760943523014 0.9843141784336678 0.12296153243866004 0.03985168221010965 905.7524460705276 1777927.669225695 0.01036090482096499 0.020004286868170136 9719.820949221668 -3.9876582647738847 0.03183808408136635 S(ph)PGGPGSHVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGGPGSHVR 10 0 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 1 S(1)PGGPGSHVR;S(1)PGGPGSHVR;S(1)PGGPGSHVR;S(1)PGGPGSHVR 126.5 0.00034198 426906000.0 405254.0 485967.0 424859.0 480569.0 407365.0 417800.0 432889.0 389667.0 483610.0 426208.0 True False 403072.15749195236 502142.1178217454 484675.454259372 541408.9861261504 459240.51810847654 388918.4693954109 411948.50527342985 418745.93022893264 364430.7955419938 399007.04054497357 1.0101880832514296 1.2584793419582456 1.21470401524091 1.3568908092114884 1.1509584329169595 0.9747158066790415 1.032434176376388 1.0494700285413492 0.9133442734349884 1.0 18.606054677700733 2.8788057574912322 4.439193369308121 1.0053637716560282 1.2178849499254787 0.5781874486139298 0.0877225402457468 0.16683607215186053 5.295593232232874 0.026999454023481886 0.02892871187144181 756.4944696998399 -2.8788057574912322 0.2125211782694505 S(ph)PGHMVILDQTK ddPTM_BT-474_Trastuzumab_2h_R1 15 SPGHMVILDQTK 12 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK 270.07 4.0121000000000006e-23 20682180000.0 23127360.0 17955530.0 18200390.0 17798210.0 12951620.0 17726990.0 17274390.0 18003210.0 30214740.0 19798740.0 True False 23002844.86345125 18553168.961702924 20762846.711374205 20051461.561108425 14600932.036733907 16501564.906145908 16438761.761121847 19346700.94864801 22768722.183773115 18535167.462645907 1.2410378762322538 1.0009712077915291 1.120186626488148 1.0818063339065223 0.7877421159619571 0.8902841012578744 0.886895777675116 1.0437834450450796 1.2284066075830784 1.0 24.143761813975424 7.9999848365990625 0.8301827751135977 0.9839547906557017 77.17006786290654 0.2549795560495729 0.1206259305158588 881.9752750742382 2.6540404956157513 0.041700613584945936 126718.50830197046 99996508.55885644 -7.9999848365990625 76.18611307225083 S(ph)PGKAEAESDALPDDTVIESEALPSDIAAEAR ddPTM_BT-474_Trastuzumab_2h_R1 5 SPGKAEAESDALPDDTVIESEALPSDIAAEAR 32 1 G3V529;Q9GZR7;Q9GZR7-2;A0A1W2PRR2;F5GYL3 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 S(0.948)PGKAEAES(0.052)DALPDDTVIESEALPSDIAAEAR;S(0.994)PGKAEAES(0.006)DALPDDTVIESEALPSDIAAEAR;S(1)PGKAEAESDALPDDTVIESEALPSDIAAEAR;S(0.997)PGKAEAES(0.003)DALPDDTVIESEALPSDIAAEAR;S(0.896)PGKAEAES(0.104)DALPDDTVIESEALPSDIAAEAR 193.97 1.0430999999999999e-20 952671000.0 434414.0 446973.0 415358.0 388690.0 342858.0 539725.0 501005.0 464691.0 786520.0 539342.0 True False 432075.16329193243 461850.2261041153 473836.7960435442 437898.114146716 386518.93402142054 502415.0811259898 476769.47412504087 499368.6020730863 592692.6848280417 504920.73180608306 0.8557287036846661 0.914698480397297 0.9384379887683503 0.8672611096406567 0.7655041864469625 0.9950375365433488 0.9442461837913723 0.989003957684334 1.1738331335851502 1.0 18.945697389416992 1.8289991308126186 1.3462088421848093 1.0764135068709104 0.882467398748608 0.552985969191631 0.06916575791752633 0.3200229530650505 1.0862613681798376 0.05335589451467092 0.02204368594785099 67.45266777137802 -1.8289991308126186 -0.1939461081223024 S(ph)PGLCSDSLEK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGLCSDSLEK 11 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 S(1)PGLCSDSLEK;S(1)PGLCSDSLEK;S(1)PGLCSDSLEK;S(1)PGLCSDSLEK;S(1)PGLCSDSLEK;S(1)PGLCSDSLEK 260.05 1.3229e-20 4156370000.0 4643580.0 4107020.0 3620240.0 3319310.0 3312330.0 4689950.0 4549430.0 4202060.0 5633960.0 4533580.0 True False 4618579.481230244 4243719.677953981 4129938.3243098245 3739534.3056634753 3734135.5917819412 4365744.795454791 4329356.690389684 4515639.05482833 4245546.049196194 4244243.043006887 1.0881986338742171 0.9998766882462662 0.973068290967597 0.88108392186093 0.879811913206659 1.0286274257191983 1.0200539051417041 1.0639445029588055 1.0003070055546075 1.0 22.017075842660052 2.5529253032847996 24.999512950783 1.029469494909055 0.9614292071719027 0.19489490851149016 0.05813518192189186 196.62607981743324 64844.486573580165 0.020367699805099296 0.01920284131968043 357.21139410036477 -2.5529253032847996 -0.06804028773715232 S(ph)PGLLDTTPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGLLDTTPIR 11 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 S(1)PGLLDTTPIR;S(1)PGLLDTTPIR 129.22 0.00026174 569770000.0 230510.0 393510.0 328510.0 319060.0 341110.0 336440.0 318200.0 272740.0 303970.0 351440.0 True False 229268.95977206848 406607.7424681813 374761.35253989213 359452.9632860413 384548.3365826285 313182.69469457207 302807.45035795635 293093.24374565773 229060.66648931964 329010.79831707827 0.6968432675912194 1.235849232146844 1.1390548713198239 1.0925263399398366 1.168801566847137 0.9518918415338692 0.9203571794811765 0.8908316846889456 0.696210178088339 1.0 18.327775409226646 2.389573708744087 2.2894183105715404 0.8647958376552076 1.0807773636660296 0.2490492436322902 0.1531833454388314 0.3816269275231378 4.096080285835119 0.06064316334716865 0.047248558207361444 245.2300624561264 -2.389573708744087 0.215981526010822 S(ph)PGLLSSDNPQLSALLMGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGLLSSDNPQLSALLMGK 19 0 H0Y6I7;F5H5V6;F5H6S1;F8W8R6;A0A087X0R0;O15550 H0Y6I7 KDM6A Lysine-specific demethylase 6A 1 S(0.999)PGLLS(0.001)SDNPQLSALLMGK;S(1)PGLLSSDNPQLSALLMGK;S(1)PGLLSSDNPQLSALLMGK;S(0.999)PGLLS(0.001)SDNPQLSALLMGK 247.73 9.2093e-25 1009436000.0 538101.0 556695.0 514912.0 429113.0 440243.0 581933.0 544192.0 539694.0 655871.0 550615.0 True False 535203.924004641 575224.2565457658 587407.1339046642 483438.661802053 496305.3365253034 541705.3414329343 517867.35394468 579968.7067906033 494240.38027113443 515474.2792947821 1.0382747413447106 1.1159126258107919 1.1395469327941892 0.9378521513497107 0.9628129985540624 1.0508872376213199 1.0046424714986204 1.125116674267542 0.9588070639475986 1.0 18.975540917433452 3.756905378656766 24.974393087044746 1.0174542803821185 1.0997115512004823 0.34834632447076963 0.05618116554598035 1086.003253853762 1478471.1148313829 0.015443873866060389 0.027777298897161254 5713.541400727788 -3.756905378656766 0.08225727081836376 S(ph)PGLVPPS(ph)PEFAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGLVPPSPEFAPR 14 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 2 S(1)PGLVPPS(1)PEFAPR;S(1)PGLVPPS(1)PEFAPR;S(1)PGLVPPS(1)PEFAPR;S(1)PGLVPPS(1)PEFAPR 162.41 6.4949e-06 3603450000.0 2678220.0 3188850.0 2782310.0 2909720.0 2898650.0 2992990.0 2988940.0 2646920.0 3242410.0 2916450.0 True False 2663800.761098218 3294988.9445494716 3174035.063727945 3278090.2536596847 3267775.8958553993 2786091.646040623 2844353.553340385 2844446.6111874143 2443361.5015680366 2730319.6641015327 0.975636954207996 1.2068143477381996 1.1625140841420216 1.2006250757961732 1.1968473650980818 1.0204269055643502 1.0417657649168994 1.0417998480494544 0.8948994265006968 1.0 21.38063844018204 2.6894280511721966 7.329485368904995 1.0085813724006933 1.1553278750591238 0.5026777522312882 0.0735497584688729 0.22850837326117993 29.818223758684887 0.023506473033935295 0.02224718529216049 489.1342243870388 -2.6894280511721966 0.14674650265843048 S(ph)PGMLEPLGSSR ddPTM_BT-474_Trastuzumab_2h_R1 15 SPGMLEPLGSSR 12 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR 224.8 2.0144000000000003e-11 31038670000.0 5882860.0 5881500.0 5314660.0 5446930.0 4850720.0 6429670.0 5084030.0 5292590.0 6809390.0 5398590.0 True False 5851187.3354071975 6077262.172058175 6062917.932147167 6136510.779513687 5468430.439530024 5985202.046715155 4838096.046019363 5687549.941027459 5131307.075651249 5054047.3642345695 1.1577230907675424 1.2024545347684075 1.1996163658955716 1.2141775367875 1.0819903426762232 1.1842394056434824 0.9572716077527477 1.125345595547032 1.0152867011028457 1.0 22.26900775395236 2.6392051929871676 1.040145726996605 1.0373904232168871 1.1943333924463833 0.5750541754460409 0.05848491761412156 0.37489269212416576 0.8411294394020089 0.031154115590218176 0.025993630821185942 435.71769047682756 -2.6392051929871676 0.15694296922949613 S(ph)PGNLTER ddPTM_BT-474_Trastuzumab_2h_R1 3 SPGNLTER 8 0 Q9H0F6-2;Q9H0F6 Q9H0F6-2 SHARPIN Sharpin 1 S(1)PGNLTER;S(1)PGNLTER;S(1)PGNLTER 98.898 0.0075482 1615030000.0 1376551.0 1615564.0 1577240.0 1813346.0 1601828.0 1972330.0 2106512.0 1658486.0 2626380.0 2063350.0 True False 1369139.802365193 1669337.071110939 1799301.6823841569 2042915.4176734458 1805811.3010216008 1835987.4694654183 2004611.966902703 1782250.6469412653 1979143.8406889492 1931665.2364771916 0.7087873077128596 0.8641958449049564 0.9314769704431664 1.0575928888170825 0.9348469221897306 0.9504687638390893 1.0377636502681726 0.9226498532383303 1.0245791057969988 1.0 20.881413661675303 4.613944594294773 1.620174587129379 0.9822726247749871 0.650033795206909 0.7994651570055217 0.04335915680760421 0.32085667186228595 0.9832967618879268 0.0111551898736358 0.1555173184363415 41109.7271469159 -4.613944594294773 -0.33223882956807815 S(ph)PGNLTEREELAGSLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGNLTEREELAGSLAR 17 1 Q9H0F6-2;Q9H0F6 Q9H0F6-2 SHARPIN Sharpin 1 S(1)PGNLTEREELAGSLAR;S(1)PGNLTEREELAGSLAR;S(0.996)PGNLT(0.004)EREELAGSLAR;S(1)PGNLTEREELAGSLAR 249.51 2.8778e-21 1760730000.0 69582.0 87315.0 127073.0 125859.0 99072.0 110656.0 117201.0 95453.0 118325.0 110739.0 True False 69207.37824328696 90221.22699196795 144963.7738616839 141792.7364953859 111688.23195425 103006.61117620544 111531.53987870149 102576.1875605127 89165.38922376806 103671.54221157219 0.66756389233652 0.8702602958085168 1.3982986147330847 1.3677112684020485 1.0773277755077417 0.9935861759053437 1.0758163474706364 0.9894343748757581 0.8600758445533676 1.0 16.661660403837345 1.5904976213043889 3.1191367421375342 0.9275676061243171 1.07978448050589 0.06253332235526687 0.20393898836544058 0.6106986547868313 13.812157927380003 0.14625547223120342 0.05908290289586815 38.94911743965945 -1.5904976213043889 0.15221687438157294 S(ph)PGNTSQPPAFFSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGNTSQPPAFFSK 14 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(0.908)PGNT(0.091)S(0.001)QPPAFFSK 246.03 1.1156e-17 7545550000.0 5792800.0 5662600.0 5034820.0 4782020.0 4825880.0 5966220.0 6177660.0 5281490.0 6595710.0 5882870.0 True False 5761612.20844058 5851076.217886015 5743678.892560042 5387423.241688445 5440427.212768241 5553789.254371204 5878822.9848470595 5675621.602662811 4970285.648485941 5507420.200021601 1.0461544605617676 1.0623987285123198 1.0428982507159186 0.9782117663125314 0.9878358678255388 1.0084193783415003 1.0674367982352249 1.030540869687145 0.9024707518170569 1.0 22.392945255416077 3.903411243574559 5.919692480691646 1.003904950822642 1.053937730161295 0.265298359047317 0.04016102466639903 0.3466417997688866 17.29162314264198 0.010788647328193412 0.01988316515310677 8005.919954231409 -3.903411243574559 0.05003277933865302 S(ph)PGPAADGPIDLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGPAADGPIDLSK 14 0 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 S(1)PGPAADGPIDLSK;S(1)PGPAADGPIDLSK 173.33 2.8493e-06 401520000.0 622620.0 582220.0 511040.0 476460.0 507840.0 591310.0 622350.0 602730.0 806330.0 664000.0 True False 619267.8830995852 601598.8407405774 582989.9899606915 536779.7871474556 572510.413796494 550434.1314940185 592244.5528921245 647708.7732009252 607620.7757684414 621622.9515209997 0.9962114197751997 0.9677873689646966 0.9378514556681342 0.8635134623553585 0.9209930431231085 0.8854790997456016 0.9527391989678125 1.0419640581418337 0.9774748089363536 1.0 19.245680246255535 1.9412032838112783 6.3571520791653535 1.0085772389186642 0.9268250199714431 0.4538544626489963 0.0381219248135943 0.20985595855292077 17.744352725941173 0.017602611288538232 0.010898806061037918 87.33800829667832 -1.9412032838112783 -0.08175221894722118 S(ph)PGPGPGPGAGAEPGATGGSSHFISSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPGPGPGPGAGAEPGATGGSSHFISSR 27 0 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 S(1)PGPGPGPGAGAEPGATGGSSHFISSR;S(1)PGPGPGPGAGAEPGATGGSSHFISSR;S(1)PGPGPGPGAGAEPGATGGSSHFISSR 266.61 1.179e-53 1272610000.0 101118.0 151574.0 153871.0 164381.0 152750.0 161417.0 154925.0 134469.0 166769.0 191523.0 True False 100573.59192326602 156619.04896158192 175534.6993292924 185191.61774563623 172201.80707981728 150258.6227247467 147430.68587902715 144503.75959974638 125671.01454011044 179299.8381689103 0.5609240529738804 0.8735035712304334 0.9790008798777 1.0328599269073269 0.9604125069962067 0.8380298847966322 0.8222577743775727 0.8059335751525659 0.7008986501243879 1.0 17.452014660506926 -0.31073045862445237 7.782180923452726 1.0000056946780713 0.8514858287850866 0.1122318024886666 0.13104176712490465 0.0 0.0 0.1305705166988998 0.030775765926941135 0.48895573163065803 0.31073045862445237 -0.14851986589298471 S(ph)PGPPALK ddPTM_BT-474_Trastuzumab_2h_R1 8 SPGPPALK 8 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK 103.55 0.0049845 7335370000.0 6003130.0 5250790.0 4499720.0 4258580.0 4166110.0 5691200.0 5321150.0 5422040.0 7205950.0 5633440.0 True False 5970809.81509044 5425559.370980415 5133241.46373262 4797715.791357951 4696639.414031412 5297780.739643765 5063745.645733001 5826660.1573612485 5430140.177283009 5273909.036169362 1.1321412208935753 1.028754825646595 0.9733276453059732 0.9097077250393215 0.8905423627561764 1.0045263775523405 0.9601503573544736 1.104808618692705 1.0296234045832393 1.0 22.33044125728829 1.7537044668151667 24.999999999998263 1.0540588278160725 0.9809349111307303 0.1325112059894843 0.06748009610254514 8.999948456437327 14876.384624826967 0.03303212310954624 0.01831782945581463 56.71585281822141 -1.7537044668151667 -0.07312391668534224 S(ph)PGPPALKHPATK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGPPALKHPATK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 S(1)PGPPALKHPATK;S(1)PGPPALKHPATK 145.62 2.4507e-05 964840000.0 1330770.0 1501760.0 1308440.0 1406850.0 1374040.0 1737090.0 1662690.0 1655600.0 2792290.0 2104650.0 True False 1323605.282182447 1551745.1737669106 1492656.9788356423 1584957.0657524192 1549015.849426856 1617009.0569700215 1582259.332607385 1779149.278966456 2104167.544269048 1970329.4351184797 0.6717685167723518 0.7875562056319791 0.7575672129903932 0.8044122152888168 0.7861709934479615 0.8206795412731515 0.8030430365631932 0.9029704613124618 1.0679267673542727 1.0 20.9100054348825 1.5334839100940818 2.1042057827744562 1.0361571506544065 0.7756562246886252 0.8544606630122793 0.0426979192325134 0.10060518880574808 0.9126801239326868 0.033584128414244026 0.01150882532029178 34.15732957152251 -1.5334839100940818 -0.26050092596578134 S(ph)PGPPPPVGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGPPPPVGVK 11 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 S(1)PGPPPPVGVK 96.64 0.007197199999999998 540460000.0 518250.0 512690.0 422990.0 447260.0 454110.0 559510.0 462060.0 442580.0 547090.0 484500.0 True False 515459.79958298797 529754.5767223503 482543.3153050109 503883.0701413995 511938.2167791544 520832.3906448701 439708.39255938824 475607.5669757027 412267.00013041456 453578.79519868083 1.1364283450622983 1.1679438772932544 1.06385774734827 1.1109052616110149 1.1286643515927821 1.1482732353410177 0.9694200813924361 1.048566582058521 0.9089203562742159 1.0 18.79099367032369 2.2382334221117697 24.999995435784513 0.9919176685672001 1.1245268124038663 0.7428981367615279 0.041404243761231606 4.712451886069802 360024.02810078167 0.014866554217649718 0.011667485538161312 173.07463409067734 -2.2382334221117697 0.13260914383666622 S(ph)PGRPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGRPPK 7 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 S(1)PGRPPK;S(1)PGRPPK;S(1)PGRPPK;S(1)PGRPPK 68.735 0.037333 1030090000.0 1202650.0 1638010.0 1622250.0 1274990.0 1529520.0 1450850.0 1487460.0 1430190.0 1708230.0 1692140.0 True False 1196175.0660269766 1692530.1726520434 1850648.6991502268 1436403.6032723298 1724295.305824696 1350556.15443354 1415505.877150993 1536918.0401576667 1287259.6056092721 1584146.17648606 0.7550913443356106 1.0684179261830495 1.168231017200269 0.9067367800985061 1.0884698214210975 0.8525451593295087 0.8935449885634017 0.9701870086047524 0.8125889041784394 1.0 20.595274035020374 2.72874426627934 24.970423053273834 0.9084657345799362 1.0057903568353586 0.13275618317387106 0.11599001344147693 1341.4666918500243 3412361.5450831763 0.036443161170903716 0.0347343385070916 535.4812472468697 -2.72874426627934 0.09732462225542238 S(ph)PGSGSQSSGWHEVEPGMPS(ph)PTTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGSGSQSSGWHEVEPGMPSPTTLK 25 0 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 2 S(0.993)PGS(0.007)GSQSSGWHEVEPGMPS(0.903)PT(0.078)T(0.019)LK;S(0.789)PGS(0.04)GS(0.048)QS(0.058)S(0.064)GWHEVEPGMPS(0.968)PT(0.027)T(0.005)LK 121.14 9.8086e-05 428510000.0 312890.0 369110.0 347440.0 366340.0 348670.0 412260.0 418490.0 362700.0 401210.0 419790.0 True False 311205.43500534707 381395.60321829293 396356.5319973823 412718.60643831384 393071.0577709982 383761.43655565375 398246.0399129518 389766.5157532813 302337.17143856303 392998.6427996995 0.7918740705777955 0.9704756242954246 1.0085442768294601 1.050178197812925 1.000184262649822 0.9764955772410805 1.013352201615431 0.9917757297496177 0.7693084364992474 1.0 18.584164804657274 4.736358436026598 4.897794984457835 0.9822954793534515 0.7821844395995868 0.3649542111720011 0.07237904595063582 0.1753701421013949 12.666518156361917 0.016954439784545947 0.11929843239097106 54495.22324184188 -4.736358436026598 -0.20011103975386468 S(ph)PGSGSQSSGWHEVEPGMPS(ph)PTTLKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPGSGSQSSGWHEVEPGMPSPTTLKK 26 1 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 2 S(0.919)PGS(0.07)GS(0.002)QS(0.004)S(0.005)GWHEVEPGMPS(0.864)PT(0.11)T(0.026)LKK;S(0.994)PGS(0.002)GSQS(0.001)S(0.003)GWHEVEPGMPS(0.768)PT(0.121)T(0.11)LKK;S(0.893)PGS(0.023)GS(0.025)QS(0.028)S(0.03)GWHEVEPGMPS(0.963)PT(0.019)T(0.018)LKK 164.26 1.425e-11 1019290000.0 528539.0 536669.0 557116.0 514367.0 585494.0 716497.0 701803.0 610838.0 790732.0 684546.0 True False 525693.404750203 554531.7032417383 635553.0902609194 579485.8094607627 660053.1904051763 666967.2488425185 667854.1077421904 656421.8333325152 595866.6938659495 640857.6882106839 0.8202966343713111 0.865296170184096 0.9917226584819865 0.9042347780499045 1.029952831256636 1.0407415891424106 1.0421254516067089 1.0242864295898322 0.9297956548350819 1.0 19.289644495387947 4.55010102922092 0.827256439643835 1.0135034762243502 0.732801562749497 0.6663246053002887 0.043676109984969576 1.0762420921987128 0.6876996899051878 0.015578489973059087 0.2626973265205286 35489.59384981005 -4.55010102922092 -0.2807019134748532 S(ph)PGSGSQSSGWHEVEPGMPSPTTLK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGSGSQSSGWHEVEPGMPSPTTLK 25 0 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 S(0.999)PGS(0.001)GSQSSGWHEVEPGMPSPTTLK;S(0.954)PGS(0.042)GS(0.002)QS(0.002)S(0.002)GWHEVEPGMPSPTTLK;S(0.999)PGS(0.001)GSQSSGWHEVEPGMPSPTTLK;S(0.998)PGS(0.002)GSQSSGWHEVEPGMPSPTTLK;S(0.78)PGS(0.176)GS(0.028)QS(0.008)S(0.008)GWHEVEPGMPSPTTLK;S(0.777)PGS(0.199)GS(0.014)QS(0.005)S(0.005)GWHEVEPGMPSPTTLK 282.32 1.5243e-53 10535190000.0 4938850.0 6230320.0 6376760.0 6302770.0 6499270.0 7755260.0 7559510.0 7504710.0 7812690.0 7667940.0 True False 4912259.780357823 6437692.434892027 7274552.38020847 7100700.035762441 7326913.5103086475 7219157.130118372 7193827.621167421 8064749.568345212 5887357.234182466 7178565.504346279 0.6842954595014399 0.8967937160975004 1.013371317125138 0.9891530601013957 1.020665410919849 1.0056545595004345 1.0021260677794055 1.1234486282060658 0.820130042780546 1.0 22.775264147839003 4.701143759080999 1.9372946448486166 1.0094737466938353 0.5998155531873675 0.6406275788858347 0.07065894484908276 0.40667240030537444 1.71958956076939 0.017535640776123778 0.29040093223999336 50250.890124352714 -4.701143759080999 -0.4096581935064678 S(ph)PGSGSQSSGWHEVEPGMPSPTTLKK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPGSGSQSSGWHEVEPGMPSPTTLKK 26 1 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 S(0.895)PGS(0.026)GS(0.026)QS(0.026)S(0.026)GWHEVEPGMPSPTTLKK;S(0.929)PGS(0.043)GS(0.009)QS(0.009)S(0.009)GWHEVEPGMPSPTTLKK;S(0.969)PGS(0.024)GS(0.004)QS(0.002)SGWHEVEPGMPSPTTLKK;S(0.633)PGS(0.154)GS(0.154)QS(0.048)S(0.011)GWHEVEPGMPSPTTLKK 186.01 6.365599999999999e-18 3717590000.0 813205.0 1088040.0 1099530.0 1053400.0 1142480.0 1318600.0 1342640.0 1266580.0 1470250.0 1375060.0 True False 808826.7946355698 1124254.7536659304 1254334.2667139145 1186760.3319924644 1287968.0559905053 1227448.2856505252 1277691.3738171184 1361098.6311629196 1107926.5878406516 1287302.493551907 0.6283113710157325 0.8733415489345495 0.9743896815215304 0.9218970194938192 1.000517021012491 0.9535041622297858 0.9925339073116609 1.0573261824479152 0.8606575326236464 1.0 20.295919670799915 4.947486511820639 1.4216107322713407 0.9799263111212846 0.3270998078733981 0.807456603617673 0.05031412681355301 0.7868357554170807 0.9905274966342151 0.013400478318911366 0.8389015629480642 88610.77027820105 -4.947486511820639 -0.6528265032478865 S(ph)PGSISYLPSFFTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPGSISYLPSFFTK 14 0 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 S(0.878)PGS(0.105)IS(0.015)Y(0.001)LPSFFTK;S(0.99)PGS(0.009)ISYLPSFFTK;S(0.949)PGS(0.051)ISYLPSFFTK 233.19 3.6854999999999997e-17 1872236000.0 1715224.0 1707816.0 1620985.0 1375165.0 1478168.0 1815817.0 1856302.0 1598525.0 2218546.0 1836481.0 True False 1705989.4245633 1764659.6231634275 1849205.598145803 1549260.7480011561 1666403.9330118478 1690293.8447634438 1766505.5804977203 1717815.0526454763 1671815.065293334 1719275.2102895123 0.9922724496655919 1.0263974101425406 1.075572768733408 0.901112712338982 0.969247926706998 0.983143265631575 1.027471093589638 0.9991507132567856 0.9723952601002218 1.0 20.713369069777173 3.7735249178650507 24.99981011322343 0.9826552355163154 1.0309125090654125 0.3039219369041096 0.03608855200623888 860.43244786616 615214.7688770124 0.009662726759361709 0.01741895484767411 5936.424077469743 -3.7735249178650507 0.048257273549097146 S(ph)PGSNSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 S(0.995)PGS(0.004)NS(0.001)KVPEIEVTVEGPNNNNPQTSAVR 200.86 2.0138e-25 249510000.0 20769.0 28518.0 26567.0 40191.0 33091.0 35410.0 40103.0 27242.0 69141.0 48062.0 True False 20657.182011652832 29467.20439050496 30307.402675496396 45279.176479123904 37304.94270427654 32962.19004617404 38163.06468166286 29274.93637207307 52102.12699193365 44994.642012051634 0.4591031529069592 0.6549047413825915 0.6735780377445537 1.0063237411022419 0.8290974444087045 0.7325803378398976 0.8481690924764116 0.6506316099644018 1.1579629187399314 1.0 15.457465594261384 4.344058799854496 1.6146546462740734 0.8494722979615831 0.45910889681722067 0.46107787341159345 0.14571004054919787 0.5030914056877754 2.103469251457957 0.03919976772745429 0.24571429762388836 22083.036987018848 -4.344058799854496 -0.3903634011443624 S(ph)PGSPVGEGTGSPPKWQIGEQEFEALMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGSPVGEGTGSPPKWQIGEQEFEALMR 28 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;P35611-5;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 S(0.492)PGS(0.492)PVGEGT(0.008)GS(0.008)PPKWQIGEQEFEALMR 54.375 0.043772000000000005 39088000.0 11850.0 15433.0 11674.0 17419.0 16102.0 14863.0 19767.0 15056.0 27698.0 20420.0 True False 11786.200916658769 15946.678075554499 13317.597727772983 19624.243613989696 18152.494255968704 13835.555793738633 18810.794692726984 16179.555172818877 20872.199034184876 19116.778117558442 0.6165369940572434 0.8341718451451681 0.696644468323927 1.0265455556009804 0.9495582437762324 0.723738890970906 0.9839939856522989 0.8463536623861436 1.0918261908900908 1.0 14.222551776011686 5.686809879618481 0.5069229705397664 0.9419288349213549 2.4550321532157245e-21 0.4474893222491786 0.11198784234255536 10.642092137119128 1.0123029654169364 0.05943067277321481 7.3257181862542975 486194.31860951864 -5.686809879618481 -0.9419288349213549 S(ph)PGSTPTTPTSSQAPQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 S(0.66)PGS(0.34)TPTTPTSSQAPQK;S(0.791)PGS(0.207)T(0.002)PTTPTSSQAPQK;S(0.873)PGS(0.127)TPTTPTSSQAPQK 340.57 1.7897999999999992e-72 2064720000.0 435430.0 425660.0 415140.0 391150.0 445370.0 587760.0 577530.0 567040.0 720050.0 606350.0 True False 433085.69326082076 439827.83578309615 473588.10353843373 440669.54989448737 502085.22958519385 547129.5346382168 549592.6675211518 609355.4041707766 542603.325675674 567652.2238776471 0.7629419476284285 0.7748191890778139 0.8342926947477474 0.7763019880099513 0.8844944289224071 0.9638463686458599 0.9681855269884614 1.073466074013159 0.9558728088285052 1.0 19.114647797562224 2.8470132643881216 1.3648280476550247 1.0148123289121254 0.7830942741798698 0.8835913525088498 0.03516855597594005 0.12328504986915077 0.47084536095736385 0.014517244053707329 0.015193253558099062 703.093793715381 -2.8470132643881216 -0.2317180547322556 S(ph)PGVAAAVAEDGGLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGVAAAVAEDGGLKK 16 1 E9PM04;Q9BTE7;E9PLH8;E9PM78;H0YD80;E9PLS2;E9PQV9 E9PM04 DCUN1D5 DCN1-like protein;DCN1-like protein 5 1 S(1)PGVAAAVAEDGGLKK 104.82 0.00081568 349390000.0 285620.0 259160.0 242200.0 194120.0 223710.0 314540.0 295090.0 312280.0 465790.0 329940.0 True False 284082.253655365 267785.9839344717 276299.6547598612 218695.57209642787 252198.14246694575 292796.5901475169 280815.3693467295 335583.9193257092 351002.29576622776 308882.94672415475 0.9197084418812613 0.8669497192203869 0.89451249313096 0.7080208681501995 0.8164845134431106 0.947920865339958 0.9091319942551223 1.08644366056699 1.1363602280047118 1.0 18.236700697116085 1.9805535176914082 1.662350769760925 1.087686283783854 0.8453748308985034 0.6579236798127158 0.06925151652631029 0.21993405013395806 1.1323210266175256 0.04582295452852711 0.022154141309035116 95.62105206629093 -1.9805535176914082 -0.2423114528853505 S(ph)PGVLFLQFGEETR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGVLFLQFGEETR 14 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 S(1)PGVLFLQFGEETR 86.31299999999997 0.007751100000000001 24160000.0 3529.8 3765.5 4652.9 3145.8 4853.0 3739.7 2812.0 3796.1 4466.1 5640.3 True False 3510.7959489976465 3890.83239120718 5307.987876268199 3544.0579574538574 5471.000784015409 3481.183341306891 2675.972817116822 4079.384258205217 3365.489497673953 5280.331225096224 0.6648817658088615 0.7368538497575551 1.0052376735460322 0.6711809934592263 1.036109393670794 0.6592736691898439 0.5067812421308964 0.7725621905718382 0.6373633308604846 1.0 12.366412714589737 S(ph)PGYEPR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGYEPR 7 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 S(1)PGYEPR;S(0.994)PGY(0.006)EPR;S(1)PGYEPR;S(1)PGYEPR;S(1)PGYEPR;S(1)PGYEPR 120.12 0.004855399999999999 2979810000.0 2098090.0 2636360.0 2315470.0 2478270.0 2375550.0 2356850.0 2384880.0 2162750.0 2722340.0 2453410.0 True False 2086794.1165597122 2724109.6488867253 2641468.049573972 2792018.727897253 2678062.2115120175 2193926.5069281347 2269514.243273673 2324145.387221975 2051455.7844870714 2296831.273330021 0.9085535105651056 1.1860295009555586 1.150048799947018 1.2155959213535492 1.1659812553968212 0.9551970718978012 0.9881066448486906 1.011892085504545 0.8931678213841122 1.0 21.13121344864743 2.7362110549426517 24.988238775960006 0.9753878318007971 1.135016735145745 0.4580315905503385 0.08416267180877239 187.49622168220102 1994064.8736912657 0.02639975548067475 0.025960336027860614 544.7673301741085 -2.7362110549426517 0.15962890334494784 S(ph)PGYESESSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGYESESSR 10 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 S(1)PGYESESSR;S(1)PGYESESSR 141.44 3.9344e-05 683440000.0 102723.0 126037.0 136913.0 112811.0 124459.0 130444.0 135488.0 126411.0 136472.0 143940.0 True False 102169.95078159831 130232.06535402458 156189.16033087045 127092.86103322764 140308.11592371188 121426.71331214719 128933.92782557753 135844.43072205142 102840.30423110985 134753.62596676615 0.7581981564399325 0.9664457221072722 1.159072041366745 0.9431498419535823 1.0412195955180874 0.901101639684963 0.956812307650824 1.0080948081913157 0.7631728162659832 1.0 17.039964568148477 2.717531739362665 24.79255484388068 0.9357222373677325 0.9818291045026134 0.03688342258808952 0.11290346638464883 3061.043282880934 3608892.4196519083 0.036671605022544865 0.034601358029711295 521.8332397666953 -2.717531739362665 0.04610686713488088 S(ph)PHEAGFCVYLK ddPTM_BT-474_Trastuzumab_2h_R1 8 SPHEAGFCVYLK 12 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK 183.96 9.6165e-06 11138902000.0 4947548.0 5238706.0 4716236.0 4133015.0 4002873.0 5022216.0 4693851.0 4437505.0 5857826.0 4860770.0 True False 4920910.951292264 5413073.162345351 5380241.0345418155 4656254.275232429 4512615.149662909 4675042.028944814 4466791.494877882 4768654.156293817 4414243.27314691 4550551.497085439 1.081387817376429 1.1895422270932092 1.182327249342806 1.0232285643212016 0.9916633516955412 1.027357240532078 0.9815934393312099 1.0479288410092864 0.9700457792806361 1.0 22.1176099704366 3.691690790862543 6.332028963234093 1.0085361615516508 1.1548715481598824 0.7865300869681001 0.03462877724223914 0.08561176945623411 8.798663717640562 0.008824094368748142 0.013922967673572735 4916.893378821331 -3.691690790862543 0.14633538660823153 S(ph)PHKDLGHR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPHKDLGHR 9 1 O94888;C9JAT7 O94888 UBXN7 UBX domain-containing protein 7 1 S(1)PHKDLGHR;S(1)PHKDLGHR;S(1)PHKDLGHR;S(1)PHKDLGHR;S(1)PHKDLGHR;S(1)PHKDLGHR 113.52 0.001079 3342106000.0 1106114.0 1508370.0 1470570.0 1617760.0 1441210.0 1349780.0 1410790.0 843230.0 1441284.0 1222090.0 True False 1100158.8051248186 1558575.1836210804 1677613.4735764205 1822568.2501273314 1624739.5507790742 1256472.8856403502 1342544.6979588347 906156.1044351787 1086098.870416136 1144095.1699161106 0.9615972814617217 1.3622775662407185 1.4663233598822285 1.5930215405602743 1.4201087405151849 1.0982240976792863 1.1734554373280635 0.7920286076390144 0.949308151083072 1.0 20.125775634950315 2.277181926978687 1.6744396758184645 0.9087014550928424 1.3731033861103312 0.5263718110593434 0.17328444831199374 0.27804326071888774 1.5631011223280118 0.09328891235744478 0.0598831023213097 189.31364918888394 -2.277181926978687 0.46440193101748883 S(ph)PHLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPHLWK 6 0 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 S(1)PHLWK;S(1)PHLWK 97.798 0.026191 510370000.0 1157460.0 1145190.0 888490.0 876520.0 846370.0 1080450.0 1008940.0 937440.0 1187750.0 1019550.0 True False 1151228.3639658948 1183306.9568680269 1013581.6691064779 987487.3421283807 954150.2026719811 1005761.0346057261 960133.7176749096 1007396.5330238666 895044.9275345902 954481.4461193293 1.2061296410176299 1.2397380396225006 1.0619186713659385 1.0345799241496465 0.9996529597838754 1.0537250762651136 1.0059218244404446 1.05543857046114 0.9377289953341761 1.0 19.8643576282192 4.151484894078859 3.810267220197302 1.019350674803255 1.224829238958469 0.8574589844998951 0.0336595418015029 0.06896813797228193 1.8994589745607933 0.008134576945318925 0.02012919732829558 14173.754104858854 -4.151484894078859 0.20547856415521393 S(ph)PHPDILIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPHPDILIR 9 0 H0Y4T1;Q5T0A6;Q5T0A3;Q86SQ9-3;Q86SQ9-4;Q86SQ9;Q86SQ9-2 H0Y4T1 DHDDS Dehydrodolichyl diphosphate syntase complex subunit DHDDS 1 S(1)PHPDILIR;S(1)PHPDILIR;S(1)PHPDILIR;S(1)PHPDILIR 76.679 0.022383 847880000.0 0.0 0.0 0.0 0.0 0.0 2682.6 0.0 0.0 0.0 0.0 True False 0.0 0.0 0.0 0.0 0.0 2497.1581761611546 0.0 0.0 0.0 0.0 0.0 S(ph)PHQLLSPSSFSPSATPSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPHQLLSPSSFSPSATPSQK 20 0 A0A3B3ITS5;Q14181;E9PIQ6 A0A3B3ITS5 POLA2 DNA polymerase alpha subunit B 1 S(1)PHQLLSPSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK 247.13 2.7238e-30 1287610000.0 1399320.0 1325190.0 1316350.0 1225060.0 1217890.0 1703240.0 1724650.0 1561950.0 1985940.0 1733030.0 True False 1391786.216599067 1369298.1480557285 1501680.6380806908 1380152.47039177 1372981.0725004177 1585499.0277956915 1641222.0906971998 1678510.6404213922 1496531.6972326203 1622426.54167837 0.8578423619471178 0.843981599708801 0.9255769672796589 0.8506717776966518 0.8462516096908119 0.977239330759174 1.011584838225949 1.0345680357799154 0.9224033623639356 1.0 20.62972172837727 2.660093465957145 4.714945033139809 0.9988738095387881 0.866339439022762 0.7591988713765343 0.03491420371055911 0.10428439106344882 4.242326098553839 0.011608066364308679 0.010975245917379218 457.1865716677077 -2.660093465957145 -0.13253437051602612 S(ph)PHS(ph)PSPIATPPSQSSSCSDAPMLSTVHSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPHSPSPIATPPSQSSSCSDAPMLSTVHSAK 31 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 S(1)PHS(0.989)PS(0.011)PIATPPSQSSSCSDAPMLSTVHSAK 205.81 3.0450000000000006e-26 539200000.0 62689.0 81709.0 65877.0 74835.0 85437.0 87481.0 84482.0 74861.0 117170.0 101740.0 True False 62351.48938940268 84428.63467086639 75151.90898685124 84309.10332699463 96316.89552522666 81433.64437812343 80395.28290741945 80447.50795645562 88295.02349756096 95246.86609600371 0.6546303510559155 0.8864190301628074 0.7890223801285196 0.8851640666267759 1.0112342743974843 0.8549745279392469 0.8440727364865247 0.844621049005107 0.9270123744393263 1.0 16.539384003996513 5.382607471185703 1.2244941490166554 0.8911660541544799 7.493253090729275e-23 0.5343930647354642 0.0665355624172616 5.150251671632929 2.136438831898577 0.018511741776201626 8.545959412928081 241327.8652382697 -5.382607471185703 -0.8911660541544799 S(ph)PHSPS(ph)PIATPPSQSSSCSDAPMLSTVHSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPHSPSPIATPPSQSSSCSDAPMLSTVHSAK 31 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 S(0.703)PHS(0.352)PS(0.718)PIAT(0.17)PPS(0.025)QS(0.01)S(0.01)S(0.006)CS(0.005)DAPMLSTVHSAK 54.282 0.031216000000000008 398760000.0 80478.0 86165.0 86486.0 75187.0 83512.0 102310.0 94182.0 83680.0 102440.0 97371.0 True False 80044.71538994633 89032.94993715752 98662.47705021208 84705.66649090321 94146.75818559549 95237.5505118346 89626.05684982103 89924.62651843025 77195.03462567329 91156.69941649272 0.8781001934287243 0.9767022117635936 1.0823392869834574 0.9292313898278075 1.0328013057541856 1.0447674292889497 0.9832086662146661 0.9864840115323488 0.8468388513385184 1.0 16.47606106828536 1.4245921298667388 19.063379440256046 0.9211609147275243 0.9929480920221911 0.14123519939308293 0.06450761467329694 14.067860729354376 5105.3088324909995 0.03846976676816916 0.015133538722484274 26.582273977531074 -1.4245921298667388 0.07178717729466688 S(ph)PHSTVPEHHPHPISPYEHLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPHSTVPEHHPHPISPYEHLLR 22 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.991)PHS(0.004)T(0.004)VPEHHPHPISPYEHLLR;S(1)PHSTVPEHHPHPISPYEHLLR;S(0.992)PHS(0.003)T(0.004)VPEHHPHPISPYEHLLR;S(0.999)PHS(0.001)T(0.001)VPEHHPHPISPYEHLLR 189.51 1.0376e-17 1799600000.0 157633.0 173511.0 156476.0 150565.0 155634.0 191885.0 155735.0 45605.1 140020.0 79260.0 True False 156784.32144267272 179286.2087453856 178506.4606862263 169626.5135622229 175453.06738501036 178620.4415987038 148201.50308452654 49008.3841400055 105513.94717187407 74201.55894210003 2.1129518527368485 2.4162054180732757 2.405696904906217 2.2860235819921737 2.3645469163514146 2.4072330035287064 1.9972828764981765 0.6604764756795348 1.421990975340657 1.0 16.17916187710187 1.8943387047845264 4.611135137204279 1.0249337919901336 2.330236635706715 0.901312537811187 0.19297594390434902 0.05776556664615246 1.9006153225603697 0.08407481312308848 0.04882721341743819 78.40408751894272 -1.8943387047845264 1.3053028437165815 S(ph)PIALPVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPIALPVK 8 0 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK 107.15 0.0042564 774740000.0 1743770.0 1825550.0 1715260.0 1456520.0 1388810.0 1756600.0 1799190.0 1614570.0 2331350.0 1810160.0 True False 1734381.736071061 1886312.3281817227 1956753.6986928103 1640915.2826596408 1565666.7213782067 1635170.376591623 1712156.3061267496 1735057.412020337 1756820.030989493 1694634.039044055 1.0234550328337721 1.1131089572860189 1.1546762626086617 0.9683006742773107 0.9238966557413193 0.964910617229207 1.0103398531358305 1.0238537477974212 1.0366958237074697 1.0 20.692542322296116 3.7272316237086622 24.882638796668967 0.9903055179404703 1.0986829727942278 0.5691895560199689 0.0427957453333036 504.50883802050254 1108087.5311628855 0.012391201820453961 0.019394749171204893 5336.194166123205 -3.7272316237086622 0.1083774548537575 S(ph)PIEPSALEPAYYQGVYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPIEPSALEPAYYQGVYSR 19 0 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 S(1)PIEPSALEPAYYQGVYSR;S(1)PIEPSALEPAYYQGVYSR;S(1)PIEPSALEPAYYQGVYSR;S(1)PIEPSALEPAYYQGVYSR 224.86 1.9599e-19 1596860000.0 344111.0 288521.0 306465.0 250921.0 263030.0 341343.0 297043.0 269774.0 303311.0 287575.0 True False 342258.3446103258 298124.24707037216 349612.60815846745 282687.57287249056 296525.3113990467 317746.7618449929 282673.8952755449 289905.90576461493 228564.06820917205 269221.71729465545 1.2712880225622136 1.1073558629153373 1.2986047770278 1.050017716672898 1.101416759311836 1.1802419397586272 1.0499669124618443 1.076829568869146 0.8489807973366994 1.0 18.038435266887127 1.7390707456487389 1.1707467161603748 0.9369959607953342 1.167512840354523 0.5241187080433418 0.0855525768810257 0.3641194923973318 0.9341221330566998 0.06873345081861282 0.026948650011912247 54.83662853488544 -1.7390707456487389 0.23051687955918876 S(ph)PIINESR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPIINESR 8 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 S(1)PIINESR 73.157 0.046463 135300000.0 94031.0 90797.0 81242.0 86386.0 84213.0 101490.0 84560.0 82092.0 110770.0 98022.0 True False 93524.7475438262 93819.12325705453 92680.16743187714 97322.45874264392 94937.02638044293 94474.23518176243 80469.50974943044 88218.12189472953 83472.21774195464 91766.15203914374 1.0191638797705316 1.022371769680776 1.009960267183738 1.0605485419191392 1.0345538553250726 1.0295106973807024 0.8768975048131624 0.9613361782577441 0.9096188070122931 1.0 16.48567449299177 2.2632227833232013 24.98659804342724 0.9346676298049263 1.029807379164965 0.661432300756525 0.03236430125607703 120.4645156575149 122048.85902789028 0.0104067093115735 0.008703133427305103 183.3254599675179 -2.2632227833232013 0.09513974936003855 S(ph)PILEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPILEEK 7 0 Q12830-4;Q12830;F5GXF5;E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-2;A0A0A0MR81 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 1 S(1)PILEEK;S(1)PILEEK;S(1)PILEEK;S(1)PILEEK;S(1)PILEEK 118.18 0.0053129 5784350000.0 6903940.0 6437010.0 5702120.0 5464940.0 5468720.0 7070190.0 7261700.0 6972980.0 9927850.0 7204800.0 True False 6866769.954139849 6651261.98659529 6504928.932284464 6156800.843667073 6165129.0763570415 6581444.406737067 6910423.828612104 7493339.175674996 7481264.393874373 6744983.495660393 1.018055857150401 0.9861050054273073 0.9644099109315278 0.9127970213163982 0.9140317512005153 0.9757539675184462 1.024527907749241 1.1109499645916232 1.1091597775869564 1.0 22.685383482363093 2.079206790948339 2.879827393840087 1.0835915885841207 0.958014201957867 0.5920043349056143 0.04147958737524332 0.16843844583920373 2.7592653290604345 0.019726588976657147 0.012452874980379254 120.00705852449708 -2.079206790948339 -0.12557738662625373 S(ph)PILLPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPILLPK 7 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK 103.56 0.0087566 2288971000.0 2935050.0 2720280.0 2619890.0 2214430.0 2164350.0 2768800.0 2792000.0 2718030.0 3586410.0 2800600.0 True False 2919248.016914714 2810822.875356016 2988747.739507892 2494776.6109493785 2439967.1433924926 2577399.3730541295 2656940.293524241 2920863.2004766813 2702587.310931874 2621863.3102857075 1.1134249468545332 1.072070715635331 1.1399327065537237 0.9515280987999026 0.9306233219025467 0.9830410925477527 1.0133786468199637 1.114040991007419 1.0307887906777908 1.0 21.3221610425599 3.7479026400236437 24.874376988326535 1.0111168334902236 1.1048355834901347 0.48344475288040223 0.049301587379984635 709.6293724919004 1889477.818523428 0.015273510580813833 0.027071215341392015 5596.321293076782 -3.7479026400236437 0.09371874999991103 S(ph)PIPGQGYLGTERPSSVSSVHSEGDYHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPIPGQGYLGTERPSSVSSVHSEGDYHR 28 1 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KRE4 O75376 NCOR1 Nuclear receptor corepressor 1 1 S(1)PIPGQGYLGTERPSSVSSVHSEGDYHR 155.71 1.064e-08 213220000.0 11517.0 16049.0 18594.0 17599.0 17714.0 17195.0 15416.0 13711.0 21042.0 17601.0 True False 11454.993751658989 16583.18126317462 21211.873578054732 19827.03159553388 19969.772900896154 16006.350122676151 14670.269185161082 14734.18444304727 15856.481048354348 16477.689111025764 0.6951820534102732 1.0064021205545304 1.2873087624806059 1.2032653038869972 1.2119280055802073 0.971395322173288 0.8903110798069811 0.894189976747901 0.9623000495709229 1.0 14.008226307639044 2.5265246323781883 8.348266348905089 0.9238205486839117 1.0949129190739215 0.1622157016566559 0.15471187486913104 0.5778372403035423 91.77144293084176 0.053497793381724355 0.05007929848751492 336.1434339390248 -2.5265246323781883 0.1710923703900098 S(ph)PIRQDR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPIRQDR 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR 122.98 0.0025969 16572860000.0 1104280.0 1238090.0 1149780.0 1151480.0 1155080.0 954190.0 1153050.0 1060700.0 1215170.0 1093870.0 True False 1098334.6791770414 1279299.077208789 1311659.0299330843 1297257.2499360966 1302172.5913044563 888229.0912216557 1097272.5664212487 1139854.8201254637 915707.635943766 1024058.2800907756 1.072531417918599 1.2492444054017982 1.2808441232629992 1.2667806853933194 1.2715805502681232 0.8673618567323341 1.0714942574596273 1.1130761229960697 0.8941948458857194 1.0 19.96586639208919 2.7570987147946875 24.982857246158588 1.0126840473605765 1.2344340553285127 0.6364499450309031 0.08936901963934481 576.3707590313845 776744.7479818942 0.027960329989164756 0.029608761475472936 571.6085480810248 -2.7570987147946875 0.2217500079679362 S(ph)PISPELHSAPLTPVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPISPELHSAPLTPVAR 17 0 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A3B3IT55;A0A0G2JQF4;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5;Q7Z3B3-4 KANSL1 KAT8 regulatory NSL complex subunit 1 1 S(0.995)PIS(0.005)PELHSAPLTPVAR;S(0.998)PIS(0.002)PELHSAPLTPVAR;S(0.975)PIS(0.025)PELHSAPLTPVAR;S(0.977)PIS(0.023)PELHSAPLTPVAR 229.96 6.069899999999998e-16 2044280000.0 400509.0 509029.0 405540.0 454359.0 449529.0 474389.0 535339.0 463773.0 501783.0 501347.0 True False 398352.70404473285 525971.7225504711 462636.5069831301 511880.80281352234 506773.85358286946 441595.6050215891 509442.60737642326 498382.09625157574 378125.30319771834 469350.6052352388 0.8487316296206292 1.1206371456298725 0.9856949193689788 1.0906149839882862 1.0797341005427576 0.9408651019002332 1.085420156475755 1.0618545937568065 0.805635060400533 1.0 18.84030649411672 1.2589441263893466 24.998270538726825 0.9028174328609103 1.0337223984416124 0.23101873609631796 0.08967256828956457 256.74786006106797 314876.40644681215 0.054774737123022374 0.0199508726799463 18.152821049120455 -1.2589441263893466 0.13090496558070208 S(ph)PISVPGGSALISNLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPISVPGGSALISNLGK 17 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 S(1)PISVPGGSALISNLGK;S(1)PISVPGGSALISNLGK 239.18 2.9706e-20 784380000.0 784110.0 645500.0 623430.0 584140.0 585910.0 727450.0 647990.0 638260.0 824100.0 690770.0 True False 779888.43888281 666985.0772870092 711203.5250492994 658092.0641067759 660522.1655393511 677163.0937331069 616644.2481378138 685890.2022186085 621011.5973742425 646684.4672020493 1.2059798532924133 1.0313918318972353 1.0997689926377832 1.0176401281974234 1.021397913571625 1.0471305993523032 0.9535473316775215 1.0606257564623238 0.9603007786179196 1.0 19.302702432959766 7.999999999999607 0.6879141140967666 1.0110345921364432 21.71578921023936 0.664020361324547 0.04013484415335684 155.6864202131462 0.8612680871871276 0.013792294515423043 4947.688710170155 99999999.99990961 -7.999999999999607 20.704754618102918 S(ph)PKPGPAPHDQELGFFLETGLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPKPGPAPHDQELGFFLETGLQR 23 1 Q86TV6;Q86TV6-2;G3V3H1 Q86TV6 TTC7B Tetratricopeptide repeat protein 7B 1 S(1)PKPGPAPHDQELGFFLETGLQR;S(1)PKPGPAPHDQELGFFLETGLQR;S(1)PKPGPAPHDQELGFFLETGLQR 233.63 2.8788000000000003e-37 331936000.0 222808.0 192672.0 184076.0 171736.0 169400.0 228436.0 230694.0 214704.0 310411.0 224060.0 True False 221608.426484296 199084.97104731645 209992.30078272568 193477.75999151127 190972.08588753545 212644.75700050293 219534.4498833386 230726.3027248208 233914.36834429798 209760.29897258282 1.0564841276912074 0.9491070141606648 1.0011060329875539 0.9223754968846617 0.9104300805392009 1.0137512105105129 1.0465967628699524 1.0999522018939265 1.1151508149541314 1.0 17.678382121392275 2.287695736129371 2.610190913151152 1.0796995757421128 0.9662726469056627 0.4653770167346789 0.048566581010947726 0.21583200420659912 3.0193698539218548 0.019833105292975172 0.014670517539482729 193.95265818666556 -2.287695736129371 -0.11342692883645011 S(ph)PLAEHRPDAYQDVSIHGTLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLAEHRPDAYQDVSIHGTLPR 22 1 O75815 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 S(1)PLAEHRPDAYQDVSIHGTLPR;S(1)PLAEHRPDAYQDVSIHGTLPR 249.09 1.7146e-31 307820000.0 88468.0 113916.0 112006.0 113269.0 108685.0 136288.0 135768.0 114221.0 140799.0 158941.0 True False 87991.69811771884 117707.62519632377 127775.47122639544 127608.84378626787 122525.39052353497 126866.73134744329 129200.38315587377 122744.75102248578 106100.97305993922 148797.24930376376 0.5913529889123638 0.791060491689791 0.8587219980494856 0.8576021692831123 0.8234385453820062 0.8526147623095492 0.8682981961051998 0.8249127695358613 0.713057355269641 1.0 17.1829883311751 7.999999999999745 0.039527161155658644 1.322575581481077 4.8611181016890954e-12 0.3690188635477062 0.08072009185668906 1005.7044231903266 3.0269294015366786 27.928438493763775 89.62156134593617 99999999.9999413 -7.999999999999745 -1.3225755814762157 S(ph)PLAQMEEERR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLAQMEEERR 11 1 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRM2 E7EPK1 SEPT7 Septin-7 1 S(1)PLAQMEEERR;S(1)PLAQMEEERR 127.05 0.00018054 1175360000.0 264730.0 320670.0 322370.0 306380.0 242380.0 299980.0 312460.0 257490.0 348560.0 357910.0 True False 263304.72309426806 331343.30710089166 367756.8939097289 345167.67658615054 273245.6563011859 279243.08867696364 297345.11608688603 276705.21130772645 262662.0584647083 335067.8773778326 0.7858250249317625 0.9888841320567981 1.0975593864374984 1.030142546899323 0.8154934410291617 0.8333925975305617 0.8874175537620718 0.825818378870456 0.7839070116784804 1.0 18.354093857878432 3.235538170152816 24.998971502407066 0.8485068930574545 0.9852626340136923 0.2768788281913329 0.09213235561113 90.6678338385076 749924.9208932176 0.026284543010591913 0.032727690207303026 1720.038508822402 -3.235538170152816 0.13675574095623777 S(ph)PLDNMIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPLDNMIR 8 0 P41212 P41212 ETV6 Transcription factor ETV6 1 S(1)PLDNMIR;S(1)PLDNMIR;S(1)PLDNMIR;S(1)PLDNMIR 99.283 0.0072623 312133000.0 200057.0 238869.0 230884.0 254616.0 233204.0 236814.0 220018.0 188475.0 217910.0 244125.0 True False 198979.91534042227 246819.61026564016 263390.4603202965 286850.35949363303 262901.14709159883 220443.605580194 209374.8887896195 202539.96155665748 164209.00034440117 228544.7334940724 0.8706388123600454 1.0799619247058334 1.152467861733195 1.2551169090976795 1.1503268663087243 0.9645534255372001 0.9161221332411491 0.8862158338114171 0.7184982906143411 1.0 17.802117048795402 2.4694357941856073 2.5285792462000436 0.871155956499198 1.1109232480797362 0.4636598473907044 0.11215656393251285 0.2540944575032154 3.2979669077053164 0.04449538671361654 0.03737825789082263 294.7377705987779 -2.4694357941856073 0.23976729158053822 S(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_BT-474_Trastuzumab_2h_R1 4 SPLDPDSGLLSCTLPNGFGGQSGPEGER 28 0 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 1 S(0.995)PLDPDS(0.005)GLLSCTLPNGFGGQSGPEGER;S(1)PLDPDSGLLSCTLPNGFGGQSGPEGER;S(1)PLDPDSGLLSCTLPNGFGGQSGPEGER;S(0.995)PLDPDS(0.005)GLLSCTLPNGFGGQSGPEGER 208.89 1.1016e-25 321480000.0 226758.0 221663.0 214899.0 202986.0 206589.0 226503.0 221113.0 208226.0 230196.0 226833.0 True False 225537.16012318202 229040.91895688677 245154.91126440695 228684.0067873764 232896.88460106336 210845.3807407107 210416.9194563128 223764.88147020343 173467.28026836689 212356.32373849823 1.062069431946444 1.078568864466379 1.1544507220152194 1.0768881414098341 1.0967268621953512 0.9928848693027473 0.9908672167230882 1.0537236543318296 0.8168689173672998 1.0 17.696127545638397 2.324007113144571 0.8876517149116886 0.9501581416059377 1.1004245724349062 0.5012899681346075 0.06126809916241471 0.5270236809501667 0.8056434914722611 0.045041105948882755 0.02799390195158162 210.86626866366873 -2.324007113144571 0.1502664308289685 S(ph)PLDSHGEESSLDVNVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLDSHGEESSLDVNVLK 18 0 Q96CN9 Q96CN9 GCC1 GRIP and coiled-coil domain-containing protein 1 1 S(1)PLDSHGEESSLDVNVLK 174.2 4.1309e-12 54067000.0 81860.0 82251.0 73539.0 65507.0 71580.0 74782.0 86380.0 70872.0 97443.0 88232.0 True False 81419.27485550092 84988.67481322061 83892.65198755341 73800.17948341611 80695.2887121003 69612.4963578929 82201.46939635527 76160.82852072398 73429.4783193038 82600.95822078444 0.9856940719485966 1.0289066451996118 1.0156377576555033 0.8934542779292622 0.9769292082109936 0.842756523136516 0.9951636296595813 0.9220332325583124 0.8889664224358493 1.0 16.33387089742123 3.7535544217989574 24.406669212117418 0.9298240058212269 1.011962221635216 0.36068584379870494 0.04799689469877649 576.4522830148852 938335.9160504355 0.011395526252120309 0.02043090976311561 5669.626136236556 -3.7535544217989574 0.08213821581398906 S(ph)PLFIFMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLFIFMR 8 0 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 S(1)PLFIFMR;S(1)PLFIFMR 102.62 0.0051711000000000005 216840000.0 48940.0 60484.0 66313.0 47096.0 48502.0 48720.0 61104.0 48972.0 68467.0 44168.0 True False 48676.51247774517 62497.173376649895 75649.29399707128 53058.3487711383 54678.44220612307 45352.10107454388 58148.166080052026 52626.539314777256 51594.22526079637 41349.160425872724 1.1772067915383264 1.5114496336313656 1.8295243051594465 1.2831783819711846 1.3223591880213859 1.0968082690783358 1.4062719891083433 1.2727353777623045 1.2477695974816738 1.0 15.335570416038461 3.512005838444546 24.69725318306403 1.2513093188914755 1.51489128098145 0.32020923338343965 0.18154797330160455 625.3714310801289 442742.7640098732 0.04714193081391868 0.07299160560913472 3250.916677308923 -3.512005838444546 0.26358196208997464 S(ph)PLHVGETR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLHVGETR 9 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 S(1)PLHVGETR 108.24 0.0017023 405940000.0 157360.0 181680.0 151100.0 145990.0 149730.0 151310.0 139550.0 146730.0 164190.0 148840.0 True False 156512.79124433952 187727.1089721208 172373.56661525616 164472.31903130808 168797.22798075978 140850.2958454276 132799.43336723073 157679.737679843 123727.57453328106 139340.903771665 1.1232365156810933 1.347250548049733 1.2370636471378216 1.180359209531362 1.21139753950042 1.0108323689089602 0.953054198534885 1.1316112743048479 0.8879487012372966 1.0 17.088259300259658 2.755583381984126 5.072291575473644 1.0108272804995397 1.2272355035804796 0.6701781118850996 0.07793383163818501 0.11635395165706905 9.123622721412097 0.024343205845736304 0.024839447680617303 569.6175768518549 -2.755583381984126 0.21640822308093988 S(ph)PLIESTANMDNNQSQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPLIESTANMDNNQSQK 17 0 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 S(0.546)PLIES(0.453)T(0.001)ANMDNNQSQK;S(0.875)PLIES(0.115)T(0.01)ANMDNNQSQK;S(0.983)PLIES(0.017)TANMDNNQSQK 334.3 4.2279999999999976e-72 1054550000.0 792070.0 608210.0 558930.0 529380.0 532800.0 742720.0 645040.0 632490.0 830460.0 676540.0 True False 787805.5831272498 628453.9021792915 637622.4856933496 596399.4537214456 600648.9218469841 691377.5145748198 613836.950907908 679689.6155191427 625804.2605938768 633362.6379849649 1.2438459989266863 0.9922497231265638 1.0067257641245422 0.9416397778354638 0.9483491539032692 1.0915981984261474 0.9691713942281509 1.0731444748328802 0.9880662720883964 1.0 19.27267223983952 4.740378100491395 24.775023245688118 1.0046401568519288 1.243846090168546 0.7147330421596083 0.04593952499340462 77.67856728555967 1058779.6515520343 0.011043159585542448 0.07166403830376607 55001.95171690528 -4.740378100491395 0.23920593331661721 S(ph)PLPTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLPTKR 7 1 D6R9T3;Q96FZ2;E7EMP6 D6R9T3 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 1 S(1)PLPTKR 59.35 0.06373999999999999 487090000.0 344710.0 387040.0 334080.0 338460.0 378400.0 433730.0 355430.0 301880.0 495110.0 392430.0 True False 342854.1196608813 399922.392429379 381115.5601245844 381309.00129691424 426586.9970474821 403747.2659905983 338236.49302554474 324407.8185155795 373096.7746340997 367384.781423774 0.9332289659146308 1.0885654840668895 1.0373743807448903 1.0379009163612545 1.1611449864479253 1.0989765673632534 0.9206600548741646 0.88301920743249 1.015547713185585 1.0 18.486932339810426 2.2333867392180435 24.999469849873055 0.9375399069367991 1.0634799884642112 0.36812458358211564 0.06555363618571396 116.61314308869204 563452.9082232384 0.024414242551598967 0.018577204944043163 171.1538761871116 -2.2333867392180435 0.1259400815274121 S(ph)PLQSVVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLQSVVVR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(1)PLQSVVVR;S(1)PLQSVVVR 88.155 0.013611000000000002 173347000.0 85688.0 78837.0 62567.0 63522.0 60936.0 66703.0 59626.0 51293.0 87473.0 69185.0 True False 85226.66532883172 81461.04188702711 71375.88975788688 71563.87868694264 68695.83840403112 62091.978611972496 56741.66258656033 55120.744120576455 65916.45122814839 64769.55406774144 1.3158445593078272 1.2577057702424246 1.1019975478484223 1.1048999752583617 1.060619289306566 0.9586599677223575 0.8760545506800175 0.851028618522316 1.0177073499565463 1.0 15.983028190846206 3.896068490771551 0.656896047854438 0.9113963265781874 1.37945071083104 0.827040705386219 0.058988063833513224 0.5280042517153604 0.34301640222549973 0.03228518442006643 0.1610474815139252 7871.699211921539 -3.896068490771551 0.46805438425285273 S(ph)PLS(ph)PTETFSWPDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 2 S(1)PLS(0.996)PT(0.004)ETFSWPDVR;S(1)PLS(0.967)PT(0.018)ET(0.013)FS(0.002)WPDVR 183.0 7.656199999999998e-07 25844800.0 28484.0 27233.0 23227.5 24374.0 26431.6 29476.0 27438.0 24274.8 24830.0 27291.0 True False 28330.645308869898 28139.43394230385 26497.730102950754 27459.74590087746 29797.507587632757 27438.393499040547 26110.71911666125 26086.30884093675 18710.979204953826 25549.26501499939 1.1088634170978158 1.1013793909838046 1.0371229891503548 1.0747763540264845 1.1662765081554918 1.0739406195415835 1.0219753523763695 1.0210199324959865 0.7323490203717813 1.0 14.64099416877625 1.4616905161227358 3.837549219181907 0.8648068932197678 1.0824511500457354 0.5777165565705736 0.07217866766833392 0.1324676902506711 3.7683997634006037 0.0475516861279855 0.017549720186057778 28.952796385902474 -1.4616905161227358 0.21764425682596766 S(ph)PLSPTETFSWPDVR ddPTM_BT-474_Trastuzumab_2h_R1 5 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR 274.24 1.8849e-33 324336000.0 113175.2 102672.9 87696.1 102903.2 90077.5 114511.6 122244.9 107999.9 159166.3 148695.5 True False 112565.87729814673 106090.30540942131 100042.9486118341 115930.73456909732 101548.33569382827 106595.68262331164 116331.44716613246 116059.40095038002 119941.89808414991 139205.62588537773 0.8086302301520039 0.762112197223813 0.7186702978097288 0.8328020784487187 0.7294844231183834 0.7657426339297724 0.8356806445590071 0.8337263685444986 0.8616167437292397 1.0 17.08685799218181 0.8727795893331639 0.6201658843556819 1.0023616592971323 0.7652305268778153 0.8006822402133562 0.03439390035752869 0.38882375044167283 0.336437037206973 0.03501316744289264 0.014222691045717951 7.460700210946011 -0.8727795893331639 -0.23713113241931694 S(ph)PLTQEQLIPNLAMK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLTQEQLIPNLAMK 15 0 Q9UNE7;Q9UNE7-2;H3BTA3 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 S(0.997)PLT(0.003)QEQLIPNLAMK;S(0.886)PLT(0.114)QEQLIPNLAMK 240.24 1.4587000000000001e-13 49487000.0 163077.0 144792.0 136387.0 126806.0 128938.0 179732.0 168344.0 170401.0 197339.0 179872.0 True False 162199.01155155807 149611.31419138765 155589.1041029446 142859.626598288 145357.4900245992 167307.54988361918 160200.55758346894 183117.1878987456 148707.44765712376 168392.41496383306 0.9632204133802275 0.8884682497339375 0.9239674134750172 0.8483732870567304 0.8632068733963982 0.9935575181314024 0.9513525749831218 1.0874432078076384 0.8831006294972539 1.0 17.36146762982144 2.7260011019745507 24.097193938048566 0.9939999378584572 0.8956954267198779 0.35943565046355885 0.0562061820331149 460.3198706249504 883186.3326197442 0.01797197016488431 0.017060516909763665 532.1096094347754 -2.7260011019745507 -0.0983045111385793 S(ph)PLWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLWEK 6 0 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 S(1)PLWEK 90.657 0.051169 138160000.0 205810.0 216840.0 191960.0 167630.0 177230.0 244370.0 200860.0 178670.0 186090.0 189130.0 True False 204701.94182764066 224057.3883174521 218986.29945376914 188851.9408125087 199799.18997548943 227477.27708510458 191143.63444028638 192003.2626678768 140230.61297824632 177059.56147766075 1.1561191054540565 1.2654351250368423 1.2367945431820027 1.0666012003894845 1.128429260233414 1.284750030931286 1.0795442666020756 1.0843992895131025 0.791996838848711 1.0 17.433875227930915 1.5265406395672105 2.392844773724366 0.9011917061086244 1.1807612638787852 0.6130284397387277 0.08573069113694472 0.1682967683245082 2.007460151174356 0.06476468592266542 0.022562650696595268 33.61558237134106 -1.5265406395672105 0.2795695577701608 S(ph)PMQEEEDLAAGVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMQEEEDLAAGVGR 15 0 Q92560;F8W6N3 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 S(1)PMQEEEDLAAGVGR 127.83 0.00032056 0.0 24272.0 34390.0 26435.0 29537.0 33257.0 27823.0 27879.0 28062.0 28930.0 34554.0 True False 24141.322248872708 35534.65036080599 30156.81822286096 33276.381171503155 37492.081820317435 25899.661498297093 26530.38626187765 30156.1289359487 21800.589142139102 32348.73413683225 0.7462833675888855 1.0984865809740065 0.9322410606640841 1.0286764554911807 1.1589968764072587 0.8006391034883729 0.8201367679383216 0.932219752661448 0.6739240258961776 1.0 14.98142163766379 2.703410631948825 24.99631132447204 0.8467507367403655 0.9974143655216661 0.24421171832666788 0.12965729310697421 842.4448349854537 599089.6159093681 0.03989952919511017 0.037618930057133036 505.1386880467158 -2.703410631948825 0.15066362878130057 S(ph)PMSTNSSVHTGSDVEQDAEKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMSTNSSVHTGSDVEQDAEKK 22 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 S(0.868)PMS(0.053)T(0.065)NS(0.012)S(0.001)VHTGSDVEQDAEKK 117.08 6.7109e-05 236250000.0 97629.0 100180.0 99058.0 81900.0 90088.0 153390.0 136480.0 124860.0 183580.0 154600.0 True False 97103.37631160166 103514.4307399112 113004.50537242906 92268.53160260373 101560.17280658968 142786.510341221 129877.94099576959 134177.68722623322 138339.16884596943 144733.29564028102 0.6709124937840262 0.7152081370218027 0.780777532028909 0.6375072936356483 0.7017056604515282 0.9865491538042598 0.8973604893138563 0.927068554838393 0.9558213141901811 1.0 17.143037323946096 2.7448706020361078 24.933006652477108 0.9424505941286306 0.7028792274625593 0.8917354932552464 0.04384291224697147 154.0760726296626 608809.7006495887 0.013469677128243046 0.01397617115343903 555.7386503679982 -2.7448706020361078 -0.23957136666607137 S(ph)PNELVDDLFK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPNELVDDLFK 11 0 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4 Q9UNZ2 NSFL1C NSFL1 cofactor p47 1 S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK 194.55 4.8852e-07 295978000.0 724061.0 569477.0 481531.0 402672.0 440667.0 592666.0 575617.0 557714.0 803020.0 582329.0 True False 720162.7360267395 588431.6976888833 549326.3792575173 453650.23391311016 496783.33041205845 551696.3944056982 547772.2066395214 599333.4506943083 605126.4809167136 545164.2646630607 1.3210013618039267 1.0793658642548116 1.0076346064190929 0.8321349422884297 0.9112543917732684 1.0119819477651837 1.0047837727919906 1.099363053564648 1.1099892640445035 1.0 19.05633147149728 4.715268761311797 2.4372331142074493 0.9986762814846679 1.3844360285982062 0.620073096838702 0.07632676058884434 0.37996870591415227 2.8943354000824595 0.02194144895287032 0.3003445259713299 51912.11955119149 -4.715268761311797 0.38575974711353833 S(ph)PNREWEVLQPAPHQVITNLPEGVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPNREWEVLQPAPHQVITNLPEGVR 25 1 O75376;O75376-2;A0A088AWL3 O75376 NCOR1 Nuclear receptor corepressor 1 1 S(1)PNREWEVLQPAPHQVITNLPEGVR;S(1)PNREWEVLQPAPHQVITNLPEGVR;S(1)PNREWEVLQPAPHQVITNLPEGVR;S(1)PNREWEVLQPAPHQVITNLPEGVR 207.39 1.9877e-25 2992670000.0 445247.0 427019.0 439620.0 421696.0 463752.0 528570.0 438347.0 373677.0 452427.0 522720.0 True False 442849.83962359186 441232.0692765635 501514.67475446005 475082.67036253476 522808.0683265437 492031.20001994434 417142.48096184456 401562.67523335776 340932.4280612017 489359.56207689253 0.9049579776148471 0.9016520846224584 1.0248388171388334 0.9708253545639015 1.0683515942913064 1.005459457932554 0.8524253193121409 0.820588185768935 0.6966910519010792 1.0 18.900535364571947 2.15588436238235 4.883704066705667 0.8237075884901185 0.9814357178205477 0.3873678766387294 0.08355389986951867 0.19438840947008465 8.185174022698328 0.0317135451830374 0.023230978932910904 143.18066078761004 -2.15588436238235 0.15772812933042923 S(ph)PNSHDSEPWTLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPNSHDSEPWTLLR 14 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 S(1)PNSHDSEPWTLLR;S(1)PNSHDSEPWTLLR 196.31 1.6116999999999998e-08 487740000.0 66950.0 136319.0 136121.0 146314.0 145280.0 130712.0 140796.0 121836.0 113651.0 124159.0 True False 66589.54863884425 140856.29550842431 155285.65361505796 164837.33739808752 163780.5468579761 121676.1871029513 133985.15958704852 130928.02099067214 85643.23389537682 116235.06632213216 0.5728869156773994 1.2118227309997591 1.3359621887658375 1.4181377669735202 1.4090459277071954 1.0468113535182206 1.1527085915340214 1.1264072463968846 0.736810642478806 1.0 16.826685847629882 1.3743947483591692 5.30638477732702 0.8720115280024929 1.1825032714238424 0.19260902754486842 0.2361923061216147 0.32006039049429624 12.638651830989215 0.168150805556753 0.05992481006179077 23.680711581556455 -1.3743947483591692 0.31049174342134944 S(ph)PPACSSSSSSLFSAVVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPACSSSSSSLFSAVVAR 19 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 S(0.993)PPACS(0.005)S(0.001)S(0.001)SSSLFSAVVAR 63.727 0.037764 93407000.0 8200.3 10934.0 7881.0 8373.6 9388.2 6924.1 9723.3 11972.0 15695.0 12738.0 True False 8156.1504959389795 11297.931580257422 8990.576297120004 9433.69690143545 10583.731621778994 6445.453264578191 9252.946832386919 12865.4114325842 11827.177552225136 11925.049934449537 0.683951056035177 0.9474116789749893 0.7539235765502068 0.791082381481945 0.887520947916898 0.5404969622775601 0.7759252064560883 1.0788559799165378 0.9917927067171716 1.0 13.541707686873057 1.7621064279892902 8.464444720716694 1.0245569149390044 0.7714094509596078 0.5515299928835884 0.10528879865138646 0.1194141690022558 28.902230126847765 0.049493952442705456 0.027063108380256364 57.823773269493614 -1.7621064279892902 -0.2531474639793966 S(ph)PPADAIPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPADAIPK 9 0 P18754-2;C9JW69;P18754;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;M0R1Q8 P18754-2 RCC1 Regulator of chromosome condensation 1 S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK 96.113 0.0079591 2649090000.0 1601550.0 1610070.0 1436560.0 1394530.0 1425590.0 1647580.0 1584530.0 1591540.0 2001620.0 1695260.0 True False 1592927.4327489329 1663660.2066421316 1638815.161196639 1571077.3550156164 1607130.4363660677 1533686.6725861465 1507880.230407581 1710308.796476364 1508347.5713338554 1587067.0554148958 1.0036925833184187 1.0482608160543114 1.032606124363293 0.9899250001159533 1.0126417978892057 0.9663653891329788 0.950104927994606 1.0776537706084826 0.9503993962873476 1.0 20.597931654315673 3.7446303204488927 23.69499908620533 0.9976757634388033 1.0301939431847649 0.15813768972229525 0.03633025185638353 497.16170231730746 1940816.1645757763 0.009646192042463142 0.01681832310403164 5554.312625532122 -3.7446303204488927 0.032518179745961606 S(ph)PPAPGLQPMR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPPAPGLQPMR 11 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR 105.46 0.0025833 9271870000.0 371746.0 464303.0 402542.0 390890.0 371070.0 385894.0 339834.0 284696.0 430479.0 383492.0 True False 369744.56084086304 479757.04467790975 459216.41464221326 440376.63392114587 418323.56499579555 359218.0560767659 323394.9311280511 305941.4611769953 324393.2185730692 359017.2122359803 1.0298797613018946 1.3363065288428781 1.2790930322871887 1.2266170504150882 1.1651908341398223 1.0005594267738158 0.9007783474054862 0.8521637702871511 0.903558959061403 1.0 18.45369348676432 2.6731079355484315 1.9809175125393006 0.8953778230905626 1.2305511408587277 0.7452411656705747 0.0819087299927135 0.14770375597546262 1.1476301502603028 0.030167433858037707 0.028407442839355687 471.09439330827905 -2.6731079355484315 0.33517331776816517 S(ph)PPAS(ph)PESWK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 S(1)PPAS(0.953)PES(0.047)WK;S(1)PPAS(0.999)PES(0.001)WK;S(1)PPAS(1)PESWK;S(1)PPAS(1)PESWK 126.34 0.00056295 1269330000.0 1727200.0 1305800.0 1113590.0 1040360.0 1036880.0 1534640.0 1416970.0 1287980.0 1916470.0 1473140.0 True False 1717900.94710996 1349262.763627232 1270373.7925022044 1172069.4693294873 1168920.5219307435 1428553.9489539845 1348425.747748943 1384095.6078299207 1444181.647882312 1379122.9439813935 1.245647427306624 0.9783484275390576 0.921146151651106 0.8498658328066365 0.847582535720988 1.0358423483477757 0.9777415085678797 1.0036056711769088 1.047173969648493 1.0 20.39531964312026 S(ph)PPEGDTTLFLSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPPEGDTTLFLSR 13 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR 179.46 1.4403e-05 10809900000.0 482840.0 483872.0 367415.0 375576.0 365011.0 419607.0 375412.0 327535.0 508598.0 445396.0 True False 480240.44308856723 499977.38701319974 419143.8383715705 423123.88309132477 411492.98726030265 390600.55573863134 357251.8873468921 351977.32488902943 383260.83776403987 416970.4459573 1.1517373659085335 1.1990715214008238 1.0052123416307857 1.0147574898741263 0.9868636764305394 0.936758371068416 0.8567798768728002 0.8441301495144186 0.9191558813817894 1.0 18.66958560635175 3.8711864027761353 0.7404991961142188 0.8891779418335828 1.2223393274784078 0.7522228919587126 0.05399905727183066 0.49290274648390564 0.4284595409839417 0.024697043697859203 0.11409920378227707 7433.381162924689 -3.8711864027761353 0.333161385644825 S(ph)PPGAGGS(ph)PPGAAVAPSALQLSPAAAAAAAHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPPGAGGSPPGAAVAPSALQLSPAAAAAAAHR 32 0 P78415 P78415 IRX3 Iroquois-class homeodomain protein IRX-3 2 S(1)PPGAGGS(0.995)PPGAAVAPS(0.005)ALQLSPAAAAAAAHR;S(1)PPGAGGS(1)PPGAAVAPSALQLSPAAAAAAAHR;S(1)PPGAGGS(1)PPGAAVAPSALQLSPAAAAAAAHR 162.1 3.5881e-14 858090000.0 143272.0 137086.0 118080.9 132538.0 109277.0 147454.3 130903.0 146692.0 153746.0 143862.0 True False 142500.63947101578 141648.82463976316 134705.66434241825 149317.29721057267 123192.77821447588 137261.13131108615 124570.72179197846 157638.90192688283 115857.35839085084 134680.60399354514 1.0580635610889109 1.0517388580062499 1.000186072441985 1.1086770684346576 0.9147031908201136 1.0191603485655936 0.924934386230914 1.1704647681446247 0.8602378884223266 1.0 17.039182570692276 3.259515908414575 24.99993671512889 1.0000556565492689 1.0505657871335123 0.13625641387805343 0.08237364147721088 673.21208353897 803146.0734197275 0.022675890264759756 0.03066955826838472 1817.6736371306815 -3.259515908414575 0.05051013058424347 S(ph)PPGAGGSPPGAAVAPSALQLSPAAAAAAAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPGAGGSPPGAAVAPSALQLSPAAAAAAAHR 32 0 P78415 P78415 IRX3 Iroquois-class homeodomain protein IRX-3 1 S(0.999)PPGAGGS(0.001)PPGAAVAPSALQLSPAAAAAAAHR 130.19 5.7257e-08 225300000.0 27899.0 38444.0 32103.0 32323.0 29679.0 45781.0 47903.0 31980.0 37799.0 40558.0 True False 27748.794883870305 39723.58530011127 36622.8233557218 36415.08848584815 33458.44472878496 42616.267226882075 45585.74888276926 34366.50999114956 28483.942930650403 37969.553716549235 0.7308169880273269 1.0461957387399454 0.9645313091936485 0.9590602185554906 0.8811914140092175 1.1223799875295228 1.2005869024186202 0.9051070299035602 0.7501785020516457 1.0 15.21255542157453 4.747453145755064 24.15716496740407 0.9846618872396136 0.7308167755364253 0.28265845994453864 0.11945284710647383 993.7764447472596 2699566.2236183537 0.029488822980979594 0.34732615294794483 55905.32103660472 -4.747453145755064 -0.25384511170318824 S(ph)PPGPAGSSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPGPAGSSPK 11 0 Q9H9D4 Q9H9D4 ZNF408 Zinc finger protein 408 1 S(1)PPGPAGSSPK;S(1)PPGPAGSSPK 128.57 0.00027599 254398000.0 181176.0 203828.0 174338.0 159387.0 168809.0 199278.0 207920.0 207060.0 253020.0 195127.0 True False 180200.5685465461 210612.29176337196 198883.2750269391 179565.37785768253 190305.82554066717 185502.38090995388 197862.1152684671 222511.86862937539 190666.61129429785 182673.8278033704 0.9864607903246736 1.1529417995777396 1.0887343710836153 0.982983605352411 1.0417793716213788 1.0154841727498485 1.0831442995843135 1.2180829148053247 1.043754398684473 1.0 17.47891042420385 1.998184795942922 24.80605006122398 1.1212863047972583 1.0487591568494383 0.011094035179808337 0.07204626313690765 108.76121893035183 1486310.3191913462 0.02702501943048726 0.019663255973802047 99.58290608270428 -1.998184795942922 -0.07252714794782 S(ph)PPGS(ph)GASTPVGPWDQAVQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPGSGASTPVGPWDQAVQR 20 0 Q8TE77;Q8TE77-2;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 2 S(1)PPGS(1)GASTPVGPWDQAVQR;S(1)PPGS(1)GASTPVGPWDQAVQR;S(1)PPGS(1)GASTPVGPWDQAVQR;S(1)PPGS(0.962)GAS(0.038)TPVGPWDQAVQR 242.1 1.3152999999999996e-29 843360000.0 373032.0 375895.0 317764.0 350348.0 376402.0 382161.0 327363.0 327818.0 388584.0 337011.0 True False 371023.6371597518 388406.4378416742 362502.4091457986 394702.02087800985 424334.5635905559 355743.1095802297 311527.2010418973 352281.44378607464 292822.67995883105 315502.6694503669 1.175976221710286 1.2310717957420518 1.1489678035919928 1.2510259313038938 1.3449476174949124 1.1275438974889345 0.9873995728296207 1.116571990974845 0.9281147461254563 1.0 18.267292686257992 2.472004300733718 5.77090117181668 1.0295807362383902 1.2283331557869392 0.7114461835159984 0.06616255380155207 0.09489905002222468 11.653801448913452 0.02286223867195867 0.019842830665075556 296.4860749817857 -2.472004300733718 0.19875241954854905 S(ph)PPGSGAS(ph)TPVGPWDQAVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPGSGASTPVGPWDQAVQR 20 0 Q8TE77;Q8TE77-2;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 2 S(0.916)PPGS(0.084)GAS(0.93)T(0.07)PVGPWDQAVQR 132.51 1.8178e-05 192060000.0 128340.0 164520.0 150370.0 136730.0 138340.0 147060.0 149200.0 140090.0 175390.0 149420.0 True False 127649.03169991447 169995.9487455598 171540.78896052967 154040.0039807574 155956.7789945789 136894.08834200387 141982.62600065098 150544.22716260602 132167.48460559192 139883.88767510187 0.9125356309541209 1.2152646853824727 1.2263084177282446 1.101199048303082 1.1149016629907254 0.9786265639110475 1.015003431491865 1.0762084873724995 0.9448370845437734 1.0 17.09387027175072 2.8119571876908434 6.145647549943775 1.014429315810816 1.1261185847122588 0.2838517634448152 0.08628967367219673 0.31230953990169974 20.82052063437504 0.02641336611994099 0.02799445052302946 648.570494975785 -2.8119571876908434 0.11168926890144282 S(ph)PPGSGAST(ph)PVGPWDQAVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPGSGASTPVGPWDQAVQR 20 0 Q8TE77;Q8TE77-2;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 2 S(1)PPGSGAS(0.007)T(0.993)PVGPWDQAVQR 328.73 4.8340999999999986e-79 162640000.0 114090.0 119450.0 111940.0 94777.0 96386.0 110470.0 116610.0 88168.0 105780.0 97950.0 True False 113475.75211659077 123425.8210409503 127700.17900007773 106775.75848229516 108660.18577541932 102833.46891840853 110969.12880654093 94747.54386803246 79711.93637938044 91698.74714078596 1.2374842149410217 1.3459924468919238 1.392605493333714 1.1644189458593293 1.1849691425837292 1.1214271963882705 1.2101487999194687 1.0332479649102038 0.869280539427632 1.0 16.484614402288834 2.31282296911484 0.5800406212178325 0.9416772903947198 1.3227877496435059 0.7222747194412087 0.07911418053834382 0.4518846762588122 0.3079341162716008 0.07300719528054028 0.05869980196498368 205.50527268014523 -2.31282296911484 0.38111045924878606 S(ph)PPGSGASTPVGPWDQAVQR ddPTM_BT-474_Trastuzumab_2h_R1 8 SPPGSGASTPVGPWDQAVQR 20 0 Q8TE77;Q8TE77-2;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 S(1)PPGSGASTPVGPWDQAVQR;S(1)PPGSGASTPVGPWDQAVQR;S(0.851)PPGS(0.149)GASTPVGPWDQAVQR;S(1)PPGSGASTPVGPWDQAVQR;S(0.714)PPGS(0.286)GASTPVGPWDQAVQR;S(1)PPGSGASTPVGPWDQAVQR;S(1)PPGSGASTPVGPWDQAVQR;S(0.998)PPGS(0.002)GASTPVGPWDQAVQR 324.79 3.216199999999998e-67 35844550000.0 316182.0 345375.0 314069.0 306950.0 327650.0 353775.0 380280.0 316022.0 352519.0 373326.0 True False 314479.71124312235 356870.59809140384 358287.1852633143 345809.83852770727 369374.28536629933 329319.3669467729 361884.4035893264 339605.16636720044 265645.4159625901 349500.0150595307 0.8997988489057911 1.0210889348048175 1.025142116810172 0.9894415554425803 1.0568648625190573 0.9422585200480739 1.0354345865412518 0.9716885600401338 0.7600726881723952 1.0 18.4149329922015 1.4344461065913754 13.14410124132971 0.875233118571551 0.9976430268514437 0.30276556614732253 0.06912197438602646 0.8110697206848311 247.30835542633292 0.03674768212589022 0.015403887421233449 27.19231024472895 -1.4344461065913754 0.12240990827989273 S(ph)PPHHSGFQQYQQADASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPHHSGFQQYQQADASK 18 0 E9PD50;B1ALB4;Q92540-2;Q92540;Q92540-5;Q92540-4 E9PD50 SMG7 Protein SMG7 1 S(0.499)PPHHS(0.499)GFQQY(0.002)QQADASK 165.8 4.5563e-11 258200000.0 186490.0 234160.0 279070.0 217600.0 283500.0 341200.0 310460.0 179840.0 279070.0 285770.0 True False 185485.958560987 241953.8740472906 318360.63028007635 245148.1376889691 319602.0445638508 317613.6470984066 295441.8637276278 193260.57400901642 210296.9378464143 267531.9139399938 0.6933227360777251 0.9043925656718462 1.1899912260616623 0.9163323136990478 1.194631473520337 1.1871990986826562 1.104323814593178 0.7223832520121838 0.7860629961836364 1.0 18.02935147562039 1.7440117289008132 19.048778317623828 0.815992937054494 1.0370431960779605 0.21731730979579733 0.1640517033142099 0.29661010040686264 1035.3623077264701 0.07821528532378977 0.04331668751584443 55.46406918215372 -1.7440117289008132 0.22105025902346642 S(ph)PPKADEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPKADEK 8 1 Q13427;E9PG73;C9JM79;Q13427-2 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(1)PPKADEK 55.776 0.073757 487500000.0 1084800.0 711850.0 549120.0 518310.0 558460.0 615760.0 787050.0 794750.0 1422700.0 848260.0 True False 1078959.557332611 735543.4969275884 626431.322963397 583927.9928564789 629576.5707482472 573193.9605431268 748977.3846770261 854058.280658728 1072094.648203293 794123.3205680759 1.3586801059573186 0.9262333416948612 0.7888338079723934 0.7353114783718556 0.7927944620715581 0.7217946453619983 0.94314996837172 1.0754731142359322 1.3500354673331725 1.0 19.59900353741843 1.6657062018079114 3.0171685107180237 1.1818413645932688 0.8728766202520132 0.26634414482083 0.1898079084033505 0.265104914204427 5.60403399048064 0.12022735282041737 0.052155665530145424 46.31335060793215 -1.6657062018079114 -0.30896474434125565 S(ph)PPKADEKER ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPKADEKER 10 2 Q13427;E9PG73;C9JM79;Q13427-2 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(1)PPKADEKER 72.089 0.025584 152960000.0 203150.0 175380.0 134380.0 152790.0 155280.0 191940.0 188490.0 153800.0 307110.0 202480.0 True False 202056.26297208702 181217.41728055142 153299.53594810117 172133.19833408832 175053.9875833325 178671.63957815996 179372.0185982755 165277.33698057555 231426.85556316393 189557.55304815076 1.06593622740404 0.9560020920639295 0.8087229101821152 0.9080788159908544 0.9234872721682891 0.9425719877950439 0.9462667971490011 0.8719111126033178 1.220879104217903 1.0 17.53227641724457 1.2499574118198835 24.999805809548548 1.1104395851779632 0.9229706650056766 0.45859336737204326 0.07920395383289089 154.6422706216885 339225.064502848 0.05198100193381798 0.018615794343851372 17.781050353375242 -1.2499574118198835 -0.18746892017228656 S(ph)PPKEYIDEEGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPKEYIDEEGVR 13 1 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 S(1)PPKEYIDEEGVR;S(1)PPKEYIDEEGVR 85.63600000000002 0.0055682 428640000.0 383310.0 357660.0 298190.0 283598.0 288974.0 323450.0 281190.0 286630.0 447670.0 356940.0 True False 381246.3015497442 369564.4968899645 340172.5600860567 319501.4777220421 325773.12601691065 301090.6628194008 267587.765449886 308019.7860776483 337347.7269706679 334159.7836082919 1.140910188033423 1.1059514490324625 1.0179937166969593 0.9561338419364298 0.9749022533447286 0.9010379991517611 0.8007778870348958 0.9217739572117829 1.0095401766423004 1.0 18.350178588805047 4.09045668521423 1.0672048416186264 0.916885640990265 1.1665421980512125 0.6343434948871765 0.05631437932579034 0.4612701665363107 0.8187492112571506 0.019105314276264867 0.10304241144243466 12315.631484532403 -4.09045668521423 0.24965655706094747 S(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPKVPIVIQDDSLPAGPPPQIR 23 1 Q7Z422-5;Q7Z422;Q7Z422-4;Q7Z422-2;Q7Z422-3 Q7Z422-5 SZRD1 SUZ domain-containing protein 1 1 S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR 244.62 1.1219e-37 1224270000.0 737934.0 537597.0 488599.0 432132.0 469975.0 681704.0 631616.0 603871.0 882288.0 688231.0 True False 733961.0453361743 555490.5911607505 557389.4922213594 486839.86689250794 529823.530489932 634579.4070386062 601062.3210725676 648934.9204148054 664859.9444534958 644307.5083557961 1.139147124343102 0.8621513546820261 0.8650985515344339 0.7556017283344583 0.8223146923151416 0.9849014621263457 0.9328811371551674 1.007181993068524 1.0318984892014487 1.0 19.29738988155772 2.2854511676048137 1.7473339385875268 1.0054269963105689 0.8824985375255043 0.20130672232268765 0.0970013506058565 0.5631554546588708 3.465748900410444 0.0502990472345076 0.03301003811691704 192.95283663843279 -2.2854511676048137 -0.12292845878506453 S(ph)PPLGLISR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPLGLISR 9 0 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 S(1)PPLGLISR;S(1)PPLGLISR;S(1)PPLGLISR;S(1)PPLGLISR 94.801 0.0088912 1470650000.0 90148.0 108053.0 101552.0 119895.0 107649.0 89314.0 100138.0 77423.0 92267.0 97128.0 True False 89662.65318438434 111649.47878558218 115849.63889419247 135073.6947068888 121357.46206438806 83139.93340254124 95293.94237569146 83200.69740602787 69529.03416445725 90929.20788453551 0.9860709806054895 1.2278725547390432 1.2740640943590054 1.4854819243384283 1.3346367453073078 0.9143369367971915 1.0480014573171956 0.9150051929593237 0.7646501688736493 1.0 16.4724561646371 2.734016343592704 24.602240044190914 0.9325275630319034 1.2728776424618673 0.6060151286768389 0.13416676715585166 223.08906403266408 1207777.6963865836 0.04513939545132148 0.04389692895276329 542.0212876409353 -2.734016343592704 0.34035007942996387 S(ph)PPLLESPDATR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPLLESPDATR 12 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 S(0.943)PPLLES(0.057)PDATR;S(0.963)PPLLES(0.037)PDATR 149.41 7.0541e-05 651550000.0 187931.0 198877.0 188635.0 188365.0 199824.0 224813.0 204849.0 174953.0 220350.0 196777.0 True False 186919.20037709683 205496.50072131492 215193.1683551876 212211.98968650136 225270.40195035955 209272.20646287865 194939.67127082674 188008.88125333318 166047.6950387262 184218.52339073457 1.0146601814880147 1.115504005454701 1.1681407732204792 1.151957934416788 1.2228433808067845 1.1359998039882464 1.058197990531887 1.020575335166264 0.9013626424880883 1.0 17.491058607855003 1.7970232858861832 1.80475394233081 0.9560380572078744 1.1393270863225833 0.6280570168237245 0.056003031327674146 0.21731936724766895 1.3730824784979494 0.04035119573142815 0.01713390518962832 62.66474631888345 -1.7970232858861832 0.1832890291147089 S(ph)PPLPAVIR ddPTM_BT-474_Trastuzumab_2h_R1 8 SPPLPAVIR 9 0 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR 103.88 0.003515 32426650000.0 355282.0 455427.0 436655.0 476748.0 398043.0 355825.0 415536.0 372810.0 442477.0 422148.0 True False 353369.2011875412 470585.6123835646 498132.22852670104 537104.2479179266 448731.4166643 331227.6552719537 395434.9361783277 400630.97529082105 333434.47223803226 395206.15322091396 0.8941389153675788 1.190734528165392 1.2604364189852404 1.3590482929998662 1.1354363109156003 0.8381136087392919 1.0005788952311323 1.0137265627715941 0.8436975728251065 1.0 18.592245883789033 2.9015017175346576 6.193227891469828 0.9524722950627791 1.1906374539437126 0.4571257591637028 0.12433778101030613 0.22117826009015853 11.62951991011462 0.03906111034325825 0.04164626223147978 797.0796428504831 -2.9015017175346576 0.23816515888093348 S(ph)PPPETIK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPPETIK 8 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 S(1)PPPETIK;S(1)PPPETIK;S(1)PPPETIK;S(1)PPPETIK 89.88600000000002 0.014253 2009710000.0 1576100.0 1620000.0 1331340.0 1280970.0 1336780.0 1707300.0 1689700.0 1497120.0 2090970.0 1629390.0 True False 1567614.4527211713 1673920.720689321 1518781.0997852737 1443140.6706591875 1507011.0092841776 1589278.369551906 1607962.7557191683 1608842.6966213195 1575678.4610625177 1525400.9352090398 1.0276737194384549 1.097364425346919 0.9956602652647129 0.9460730207703856 0.9879442017502487 1.0418758326866453 1.0541246688686567 1.0547015276353195 1.0329602038998278 1.0 20.5407570586977 2.651346604855564 10.368749562581575 1.0427736518983257 1.0113022871780595 0.09025135391731853 0.038623027676607184 1.2667142080496272 145.03956257976327 0.013758838254659544 0.01296804274145094 448.0707610437645 -2.651346604855564 -0.03147136472026624 S(ph)PPPGPDGHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPPGPDGHAK 11 0 P57081;P57081-2;P57081-3 P57081 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 S(1)PPPGPDGHAK;S(1)PPPGPDGHAK 175.21 6.4993e-06 405510000.0 762920.0 758820.0 608470.0 543350.0 629700.0 718000.0 666910.0 710770.0 956100.0 691720.0 True False 758812.5234883812 784076.864983624 694137.28708395 612138.0542890687 709888.5624756862 668366.3499902003 634649.015456395 763811.2666169279 720481.9660836216 647573.8373887141 1.1717776100223993 1.2107914491192953 1.0719044640268345 0.9452791619214619 1.0962279843457712 1.032108327114218 0.9800411610443724 1.1794967963760414 1.1125865877919086 1.0 19.30468517497536 4.200812246161224 6.84135731397655 1.0577484465444318 1.1913415451352218 0.41759231812556896 0.06549598188467444 0.17431051354864116 22.962320484156564 0.017311692962267488 0.038964514736680576 15878.60137781852 -4.200812246161224 0.13359309859079005 S(ph)PPPPHRPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SPPPPHRPR 9 1 O43281-3;O43281-2;O43281 O43281-3 EFS Embryonal Fyn-associated substrate 1 S(1)PPPPHRPR;S(1)PPPPHRPR;S(1)PPPPHRPR;S(1)PPPPHRPR;S(1)PPPPHRPR 81.525 0.01274 1915760000.0 33369.7 37333.0 36037.600000000006 35566.5 43075.100000000006 43314.700000000004 41892.5 32272.800000000003 44765.4 48873.1 True False 33190.0412429222 38575.60633672493 41111.38083556554 40069.2152532846 48560.45865887951 40320.45674083635 39865.999730109026 34681.16021395784 33733.56699562784 45753.97691563395 0.7254023252256634 0.8431093631020258 0.8985313104338685 0.8757537148556175 1.0613385312586148 0.8812448547409003 0.8713122315819277 0.7579922566710791 0.7372816369127733 1.0 15.481609526817309 -0.24032284552284455 8.025772290463951 0.9999997867847313 0.8532729124956551 0.18960632805469746 0.09270351750097851 0.0 0.0 0.095581151664385 0.022528693498502173 0.57501232616445 0.24032284552284455 -0.14672687428907627 S(ph)PPPPPPPPSDEALLHCVLEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPPPPPPPSDEALLHCVLEGK 22 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 S(1)PPPPPPPPSDEALLHCVLEGK;S(1)PPPPPPPPSDEALLHCVLEGK;S(1)PPPPPPPPSDEALLHCVLEGK;S(1)PPPPPPPPSDEALLHCVLEGK 290.71 1.4351e-55 724565000.0 679412.0 592470.0 537508.0 463729.0 503390.0 648795.0 631844.0 570919.0 725088.0 621458.0 True False 675754.1212817691 612190.0057943214 613184.4542967108 522437.04385279486 567493.7326737101 603945.3287491524 601279.2918415236 613523.8748479404 546399.778081416 581796.018383038 1.161496641314021 1.0522416559256562 1.0539509294011833 0.8979728759656741 0.9754170099873188 1.0380705774296515 1.033488151934478 1.0545343306973505 0.9391603943939024 1.0 19.150153897587472 4.693417562417466 1.6789683713263401 1.0016701142302868 1.20568129914509 0.5274175256951757 0.04749049258242171 0.7630360429870431 2.260500477011425 0.01333843307968128 0.2445269690282174 49364.820527617034 -4.693417562417466 0.2040111849148032 S(ph)PPPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPPPPPR 8 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 S(1)PPPPPPR 65.404 0.06751 336070000.0 29106.0 33785.0 41473.0 33690.0 36581.0 37682.0 31831.0 26606.0 39642.0 23608.0 True False 28949.296529980602 34909.513301536215 47312.0379102218 37955.15054568647 41239.373517425876 35077.13203388676 30291.21292377157 28591.47482253049 29872.76027558516 22101.317228174325 1.3098448491149934 1.5795218421205346 2.140688603388279 1.7173252686180165 1.8659237859748348 1.5871059481093335 1.3705614290336021 1.2936547866062318 1.3516280485537735 1.0 14.43184473567853 2.194720873724029 1.779369540409755 1.2378470077800081 1.739374527267613 0.5210901058018056 0.21534942790290376 0.3069732326450766 1.9199634686336273 0.11857870788485221 0.07145091425393271 156.5744423917512 -2.194720873724029 0.501527519487605 S(ph)PPPPPPRR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPPPPPPRR 9 1 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 S(1)PPPPPPRR;S(1)PPPPPPRR;S(1)PPPPPPRR 65.241 0.041109 404960000.0 309982.0 381398.0 355278.0 405902.0 379819.0 371481.0 396394.0 393044.0 497316.0 417597.0 True False 308313.09135423775 394092.60187004006 405298.05426826567 457289.1515819301 428186.6982864099 345801.3928422137 377218.9078478686 422374.93911699107 374759.1354929844 390945.60193722066 0.7886342494364412 1.008049713098767 1.0367121468048892 1.1697002071796248 1.095259023671456 0.884525599287196 0.9648884805933785 1.0803931212527553 0.9585966273465444 1.0 18.57660835236539 4.738707396691017 4.0575985160397705 1.028706491528327 0.7677451336098287 0.4596433553710304 0.07592710705988082 0.2151594917874054 7.6038620638041605 0.019352458756477547 0.16490811319615722 54790.76910078596 -4.738707396691017 -0.2609613579184984 S(ph)PPPTVDESADNAFHLGPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPPTVDESADNAFHLGPLR 20 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 S(1)PPPTVDESADNAFHLGPLR;S(0.999)PPPT(0.001)VDESADNAFHLGPLR 202.58 7.3863e-22 601830000.0 33332.0 36422.0 41034.0 54201.0 40610.0 39305.0 39266.0 32700.0 38973.0 41591.0 True False 33152.54421553332 37634.28425243606 46811.2305260782 61062.84104264623 45781.44278567194 36587.9378640178 37366.55356931338 35140.240047235464 29368.62636144444 38936.62677215344 0.8514488019091383 0.9665522509862415 1.2022415500963861 1.5682622277468818 1.1757937597823382 0.9396791889066423 0.9596761883861255 0.9024983148351963 0.7542673517483078 1.0 15.248840282871054 2.699363510372983 4.984803283666115 0.906433356218921 1.1687255622745463 0.3009513478200718 0.18371231959832052 0.27327062841591415 17.076998633166035 0.06581861532399975 0.06325870411590287 500.4532458751179 -2.699363510372983 0.2622922060556253 S(ph)PPPVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPPVSK 7 0 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 S(1)PPPVSK;S(1)PPPVSK 80.455 0.031329 4084500000.0 4951500.0 4893200.0 3989700.0 3624100.0 3984700.0 3941400.0 4415600.0 4501000.0 5629900.0 4737500.0 True False 4924841.674163367 5056067.203998138 4551415.080905939 4082910.688412653 4492127.925832723 3668940.2950576227 4202000.558769927 4836887.475614894 4242486.581794986 4435148.6940221945 1.1104118517607295 1.1399994797948563 1.0262147663821175 0.9205803390347889 1.012847197634507 0.8272417788388274 0.9474317207072426 1.0905806793206672 0.9565601684365433 1.0 22.080551042854427 4.086422271357645 3.943591961376129 0.9712004440611034 1.12440205631216 0.49010852832022156 0.06448364773711486 0.19852576435845495 5.878343233841951 0.01780763578495886 0.04177068250636181 12201.754180925376 -4.086422271357645 0.15320161225105655 S(ph)PPREGSQGELTPANSQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPREGSQGELTPANSQSR 19 1 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;J3QQX0 Q13098-7 GPS1 COP9 signalosome complex subunit 1 1 S(0.993)PPREGS(0.007)QGELTPANSQSR;S(0.984)PPREGS(0.016)QGELTPANSQSR 61.602 0.032224 1114110000.0 102252.0 87453.0 75019.0 65097.0 93512.0 93619.0 96017.0 111282.0 128770.0 118332.0 True False 101701.4865932653 90363.82023854519 85581.02312316281 73338.27352545423 105420.19891095179 87147.33888542121 91372.29088944022 119586.42791854621 97036.35892959726 110779.95045087789 0.918049576474236 0.8157055484386985 0.7725316970701408 0.6620175693071277 0.9516180363133243 0.7866706794029857 0.824808916392832 1.0794952284400352 0.8759379159735694 1.0 16.757337272769146 1.761069930471941 24.99999999999946 0.9897954806072154 0.8147210411814229 0.43094525650850946 0.08747522082559132 10.186066794134852 11322.023300296614 0.03939879967228518 0.021849290882651685 57.68593423030163 -1.761069930471941 -0.1750744394257926 S(ph)PPRPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPRPPR 7 1 P21127-2;P21127;P21127-9;P21127-3;P21127-8;P21127-6;A0A0D9SER5;A0A0D9SEI3;A0A0D9SEN2;P21127-10;Q9UQ88-9;Q9UKB5;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q5QPR4;J3KS35;E7ESP2 P21127-2;Q5QPR3 CDK11B;CDK11A;AJAP1 Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A;Adherens junction-associated protein 1 1 S(1)PPRPPR;S(1)PPRPPR;S(1)PPRPPR;S(1)PPRPPR 87.639 0.011624 5131350000.0 180963.0 210006.0 175664.0 173021.0 189217.0 191505.0 206856.0 178670.0 185950.0 185353.0 True False 179988.7153148796 216995.92275869212 200395.96430114025 194925.44085975725 213312.66337297444 178266.7101042803 196849.58501334203 192003.2626678768 140125.11410234252 173523.61285131285 1.0372577677316257 1.2505267680464294 1.154862793646727 1.123336689784018 1.2293004961564258 1.027334016247297 1.1344253486816027 1.1064964560898038 0.8075276430672954 1.0 17.404772470528812 1.3462984762330643 6.056919150599932 0.906450181474108 1.1380574690892575 0.5734484964721083 0.07925349897853814 0.12926317914432223 6.085463382719759 0.05141000130017209 0.018393536184675006 22.197214368192576 -1.3462984762330643 0.23160728761514948 S(ph)PPSSSEIFTPAHEENVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 S(0.986)PPS(0.014)SSEIFTPAHEENVR;S(0.997)PPS(0.003)SSEIFTPAHEENVR;S(0.977)PPS(0.023)SSEIFTPAHEENVR;S(0.997)PPS(0.002)SSEIFTPAHEENVR 261.17 5.785e-31 5263100000.0 445370.0 478380.0 452320.0 411511.0 382899.0 427186.0 388312.0 347130.0 402113.0 379186.0 True False 442972.1774052592 494302.5891131833 516002.7243640804 463608.2504068263 431658.9180298203 397655.63730767876 369527.86506410694 373034.6032904239 303017.63918814337 354986.02484253305 1.2478580744178749 1.3924564758076017 1.4535860238243805 1.3059901459852585 1.2159884835502983 1.1202008233537457 1.040964542838058 1.0508430675711726 0.8536044181529621 1.0 18.437402703878817 2.675044594508182 0.976930634245539 0.9669649979938855 1.373310784194439 0.8553776238695049 0.06790946826485254 0.19352235758214692 0.38714688283242354 0.04028742464590566 0.034881275104296436 473.19984588096645 -2.675044594508182 0.4063457862005535 S(ph)PPSTGSTYGSSQK ddPTM_BT-474_Trastuzumab_2h_R1 8 SPPSTGSTYGSSQK 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.991)PPS(0.007)T(0.001)GSTYGSSQK;S(0.999)PPS(0.001)TGSTYGSSQK;S(1)PPSTGSTYGSSQK;S(1)PPSTGSTYGSSQK;S(0.992)PPS(0.004)T(0.004)GSTYGSSQK;S(0.967)PPS(0.026)T(0.007)GSTYGSSQK;S(0.998)PPS(0.002)TGSTYGSSQK;S(0.998)PPS(0.002)T(0.001)GSTYGSSQK 245.93 1.1358e-17 16985040000.0 1873012.0 1574846.0 1400803.0 1166418.0 1332063.0 1758769.0 1637508.0 1697947.0 1855146.0 1581267.0 True False 1862927.911503195 1627263.7970954895 1598023.8864020542 1314086.3992044677 1501693.3272940288 1637189.4387268992 1558295.48215197 1824656.4271401642 1397970.125982814 1480349.1862692125 1.2584381636322983 1.099243213823444 1.079491177638572 0.887686777817765 1.0144183150994313 1.105948146499784 1.0526539931292822 1.2325851522495699 0.9443516022770203 1.0 20.497506089691548 4.743300337798996 2.33049656956297 1.0545047574387283 1.309064513677392 0.34586267876678 0.08912560345298226 0.7793565112219847 4.983416321019242 0.024096999619646724 0.40559976322510344 55373.291268055866 -4.743300337798996 0.25455975623866367 S(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.751)PPS(0.097)T(0.097)GS(0.017)T(0.017)Y(0.015)GS(0.004)S(0.004)QKEESAASGGAAYTK;S(0.961)PPS(0.019)T(0.019)GS(0.001)TYGSSQKEESAASGGAAYTK;S(0.828)PPS(0.163)T(0.009)GSTYGSSQKEESAASGGAAYTK;S(0.34)PPS(0.34)T(0.277)GS(0.034)T(0.008)YGSSQKEESAASGGAAYTK;S(0.969)PPS(0.009)T(0.009)GS(0.002)T(0.002)Y(0.002)GS(0.002)S(0.002)QKEES(0.001)AASGGAAYTK 177.1 1.3427999999999997e-17 7640454000.0 811896.0 683768.0 643652.8 574224.5 604629.2 887073.0 774777.0 758397.0 1075675.0 870198.0 True False 807524.8421461255 706526.8045335151 734273.5195095695 646921.2628234363 681625.1447019603 825751.7314552325 737298.0765744378 814992.4352019352 810589.3095565327 814661.2186260106 0.9912400684889344 0.8672645614886731 0.9013237683610112 0.7940985136306344 0.836697671519916 1.0136136501599118 0.9050364246108932 1.000406569710638 0.9950017148522848 1.0 19.63584070577989 2.7380075856365695 24.999851804587358 0.9778192309801256 0.8741422543181029 0.47395520469220365 0.05493917232420834 46.80496354486164 2115779.095386347 0.017511889483522638 0.017456545680228124 547.0255174720374 -2.7380075856365695 -0.10367697666202269 S(ph)PPSTGSTYGSSQKEESAASGGAAYTKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPSTGSTYGSSQKEESAASGGAAYTKR 28 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.867)PPS(0.058)T(0.064)GS(0.005)T(0.005)YGSSQKEESAASGGAAYTKR;S(0.998)PPS(0.001)T(0.001)GSTYGSSQKEESAASGGAAYTKR 114.23 0.00022285 614692000.0 181875.0 242503.0 215523.0 235204.0 260052.0 267479.0 284870.0 243567.0 491180.0 339810.0 True False 180895.80520821194 250574.56575884102 245866.76504050163 264980.8022839907 293168.08075103577 248988.80630783926 271089.74979092105 261743.20634816535 370135.2704747976 318123.0348740225 0.5686347273778748 0.7876655830913634 0.7728669039570351 0.8329506927686761 0.9215556517846344 0.7826808467561598 0.8521537898010852 0.8227735110468072 1.1634972318850538 1.0 18.27922531376264 6.375458649961707 0.19198582877117326 1.0286174535897161 1.4163409763022652e-13 0.5844404997648246 0.09571715964894671 23.54971060548662 0.4741885083538003 0.20345354937803672 6.379755436163415 2373879.3902134066 -6.375458649961707 -1.0286174535895745 S(ph)PPSVQSLAMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPSVQSLAMR 11 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 S(0.999)PPS(0.001)VQSLAMR 66.664 0.06513 510420000.0 27029.0 28649.0 29560.0 27665.0 24469.0 31634.0 24756.0 21814.0 33661.0 29203.0 True False 26883.4788672042 29602.564646313785 33721.79105987402 31167.38616344364 27584.982110874313 29447.21603842613 23558.457702896183 23441.871449247537 25365.697584291207 27339.239538053833 0.9833294313027525 1.0827866885291233 1.2334575368468546 1.1400238883770473 1.0089886396612615 1.0771044307007216 0.8617085954459293 0.8574441661633821 0.9278128438424329 1.0 14.73868549338088 2.270977925690815 7.447311151623281 0.8939313418987048 1.0934435076751665 0.5645140571552663 0.07493526985294625 0.13364740597989383 23.866691288901855 0.02768709363017012 0.022771865685436668 186.62848289447433 -2.270977925690815 0.1995121657764617 S(ph)PPTQVAISSDSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPTQVAISSDSAR 14 0 Q6ZUT6;Q6ZUT6-4;H0YM82;Q6ZUT6-3 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 S(0.997)PPT(0.003)QVAISSDSAR 59.976000000000006 0.091776 0.0 75054.0 95393.0 92892.0 91312.0 76737.0 115790.0 142130.0 127920.0 130580.0 119750.0 True False 74649.9176032834 98568.09833871377 105970.3861682618 102872.08983756961 86509.00209416667 107785.70984034138 135254.6289106737 137466.03996459843 98400.30868235491 112107.4524768671 0.6658782797574238 0.8792287770436393 0.9452572851044702 0.9176204397187318 0.7716614746197845 0.9614499969355964 1.2064731284352654 1.2261989450965713 0.877732091028109 1.0 16.77452266064479 2.451412350939579 5.350650965860177 1.1129536717643949 0.8499167690756785 0.4616956484828616 0.12017604670010791 0.14757166053375323 11.895051803173498 0.04255261330535319 0.03621189767995695 282.7563396254271 -2.451412350939579 -0.2630369026887164 S(ph)PPTTMLLPASPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPTTMLLPASPAK 14 0 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 S(0.99)PPT(0.009)T(0.001)MLLPASPAK 121.92 0.00011721 210670000.0 533210.0 589490.0 614780.0 602190.0 539590.0 612110.0 674420.0 701410.0 744370.0 735000.0 True False 530339.2566051999 609110.8182957703 701335.6802364464 678427.1922560688 608303.5880994998 569796.2764519512 641795.728065409 753752.7758878125 560929.9875469786 688091.6707348406 0.7707392476337193 0.8852175432457663 1.0192474492351609 0.9859546643422515 0.8840443998542638 0.8280819267052645 0.9327183504198063 1.0954249381958798 0.8151965957500098 1.0 19.392241254632335 4.60544423965486 3.3995395640745567 0.9507502219734236 0.7686194655404106 0.2894194157013571 0.08247322243267856 0.3333416660911585 6.270251443565443 0.0211093116981062 0.12489325167728736 40312.91841796267 -4.60544423965486 -0.18213075643301302 S(ph)PPVQPHT(ph)PVTISLGTAPSLQNNQPVEFNHAINYVNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK 37 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 2 S(1)PPVQPHT(0.998)PVT(0.002)ISLGTAPSLQNNQPVEFNHAINYVNK 130.56 2.5003e-08 212300000.0 41725.0 35180.0 42794.0 42504.0 33193.0 58915.0 38451.0 33364.0 56131.0 41073.0 True False 41500.35723608332 36350.945033240896 48819.02322788393 47885.00204196669 37419.931799675156 54842.344720992514 36590.978232915695 35853.791098959155 42298.26716686517 38451.68597563556 1.0792857629800554 0.9453667403888149 1.269619835624828 1.2453290623539481 0.973167517892085 1.426266321735351 0.951609202678424 0.9324374260644246 1.100036736845998 1.0 15.230759236393576 S(ph)PPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK 37 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 S(1)PPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK 178.33 9.3512e-23 7295100000.0 319340.0 325400.0 313310.0 296960.0 287210.0 340310.0 365560.0 321310.0 394230.0 327340.0 True False 317620.70892200933 336230.7422915458 357421.3246606612 334555.10555200523 323784.491072958 316785.1707035723 347876.4662251873 345287.78377912013 297077.2989113549 306448.8809501264 1.0364557636407266 1.0971837823296418 1.1663326149291127 1.0917158663289523 1.0565693373364053 1.0337292462005372 1.1351859571052019 1.12673860223792 0.9694187754586819 1.0 18.225286910993994 1.233684531974133 24.994327625967383 0.9847093283559213 1.0959422271193662 0.5252916679656381 0.04109699784762484 102.10143781988599 523331.6510365465 0.037193192143726114 0.01046015073192942 17.127127547483163 -1.233684531974133 0.11123289876344489 S(ph)PPVTLGPNLAPTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPVTLGPNLAPTSR 15 0 B4DF95;Q15735;C9K0M5 B4DF95 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 1 S(1)PPVTLGPNLAPTSR;S(1)PPVTLGPNLAPTSR 151.8 3.0857e-06 441410000.0 50116.0 35344.0 33177.0 52021.0 35065.0 35965.0 38385.0 29426.0 50072.0 25325.0 True False 49846.18102441105 36520.40367410083 37848.03322034645 58606.8532661667 39530.31990346184 33478.8242025035 36528.17090506019 31621.917542200335 37732.426530424804 23708.73681817667 2.102439341525598 1.5403774546985523 1.5963749359826573 2.4719517414877563 1.6673313389330513 1.4120880610069635 1.5407050651916347 1.3337664416586255 1.5914988141205675 1.0 14.533131178822385 2.998839149281911 24.99918939288819 1.4179533695765432 1.900591606675956 0.44982143150969356 0.28574285461679294 44.99119522090098 968935.0153474606 0.08216724032424856 0.09701539172272416 997.3306116116038 -2.998839149281911 0.4826382370994129 S(ph)PPYTAFLGNLPYDVTEESIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPYTAFLGNLPYDVTEESIK 21 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VYE9;F8VRU1 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.519)PPY(0.401)T(0.08)AFLGNLPYDVTEESIK;S(0.552)PPY(0.43)T(0.018)AFLGNLPYDVTEESIK 139.11 3.3882e-07 226680000.0 139491.0 108252.0 100807.0 82662.0 83696.0 114796.0 106720.0 109883.0 154186.0 111750.0 True False 138739.9959549069 111855.10238028417 114999.74936984862 93127.00072447426 94354.18949494214 106860.42272071722 101557.5458900097 118083.02743456805 116188.9262865489 104618.0193260116 1.3261577388744483 1.0691762575978456 1.099234626221372 0.890162147251814 0.9018923327243921 1.021434198517158 0.9707462112576913 1.1287063948954785 1.1106014722423672 1.0 16.674771836091928 4.9455926063587405 1.612350153778285 1.0139760927781587 1.5809375032161892 0.5970736984395243 0.0766911674796369 1.3976139747241243 2.3052357273803543 0.022393535927044943 1.448093405323408 88225.19082027095 -4.9455926063587405 0.5669614104380305 S(ph)PQALSNGTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQALSNGTK 10 0 Q8NC74 Q8NC74 RBBP8NL RBBP8 N-terminal-like protein 1 S(1)PQALSNGTK;S(1)PQALSNGTK;S(1)PQALSNGTK 167.73 5.4054999999999985e-06 836980000.0 510606.0 454628.0 434078.0 403749.0 430227.0 533137.0 544936.0 477329.0 604440.0 552728.0 True False 507856.9540296596 469760.0181515708 495192.4093263869 454863.5820026822 485013.85829478625 496282.4940595056 518575.3638223236 512949.7138075494 455483.8610810427 517452.4258257518 0.9814563207800607 0.9078322850683842 0.9569815206415502 0.879044254699956 0.9373110146711555 0.9590881582351012 1.002170127997332 0.9912983072578759 0.8802429718136512 1.0 18.98106670288396 2.6890869015346888 3.7246064411455913 0.9720593156666298 0.9292321807814319 0.1425697519855138 0.04129258376071993 0.3955567810000536 11.396276681875362 0.013480698072908286 0.012995091032439806 488.75014757307315 -2.6890869015346888 -0.04282713488519796 S(ph)PQEGGSHVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQEGGSHVGR 11 0 Q8TC76 Q8TC76 FAM110B Protein FAM110B 1 S(1)PQEGGSHVGR;S(1)PQEGGSHVGR;S(1)PQEGGSHVGR 172.57 8.5028e-06 408553000.0 198078.0 213172.0 196279.0 244391.0 205758.0 196842.0 244619.0 203433.0 250494.0 223548.0 True False 197011.5700565347 220267.3011548047 223913.37711234848 275330.87554202636 231960.06167678602 183234.77585622662 232785.844434673 218614.20347184245 188763.11014763196 209280.9752509282 0.9413735281972837 1.0524955786865189 1.0699174965324776 1.3156039396887569 1.1083666893212132 0.8755443519724039 1.1123124983317878 1.0445966395642208 0.9019601993028975 1.0 17.675081643370916 S(ph)PQEGPTWSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQEGPTWSR 10 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(1)PQEGPTWSR 74.15 0.031334 0.0 33802.0 39941.0 29800.0 35201.0 34581.0 42369.0 43848.0 32917.0 51539.0 44411.0 True False 33620.01378775523 41270.412040155614 33995.58097375662 39657.442990760144 38984.685372354616 39440.130755898 41726.90472437357 35373.43368913918 38837.90403721766 41576.65195782999 0.8086272512239574 0.9926343295274235 0.8176603784315623 0.9538392612994321 0.9376581214835592 0.9486124759612917 1.003613873639849 0.850800437827881 0.9341277425755646 1.0 15.343485966550181 4.759749122850783 23.67198672053718 0.9296185855447971 0.8086269992202292 0.2964609395719787 0.05846293650972457 3301.508823631598 3688351.715074741 0.013282651664254833 0.5545960062382258 57510.76212526354 -4.759749122850783 -0.12099158632456797 S(ph)PQGQLDTSESKPDSFFLEPLMPAVLKPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQGQLDTSESKPDSFFLEPLMPAVLKPAK 30 2 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 S(0.999)PQGQLDTSES(0.001)KPDSFFLEPLMPAVLKPAK;S(1)PQGQLDTSESKPDSFFLEPLMPAVLKPAK 237.88 8.8407e-46 1772970000.0 930300.0 700290.0 742320.0 622730.0 604480.0 946670.0 863450.0 833810.0 1240150.0 876760.0 True False 925291.3681660476 723598.729315755 846832.2036388925 701567.5541500538 681456.9449663368 881228.9311214783 821681.6248006831 896033.1362013881 934531.6496586167 820804.4261680001 1.1272982194867713 0.8815726453790476 1.0317100842065454 0.8547316897709549 0.8302305923809163 1.0736162026264593 1.0010687060214554 1.0916524175979412 1.1385558116707075 1.0 19.64667898510084 2.6974085671299495 24.89861688936768 1.0636341205627995 0.9413690809362236 0.2932834909337736 0.08979210669054126 589.2338692369078 356509.23183217976 0.028619041332753347 0.026982524048687184 498.20555673446614 -2.6974085671299495 -0.12226503962657587 S(ph)PQKPIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQKPIVR 8 1 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y467;A0A2R8YES9;H7C5K3 P15056 BRAF Serine/threonine-protein kinase B-raf 1 S(1)PQKPIVR;S(1)PQKPIVR 78.488 0.018468 1793580000.0 2562990.0 2830680.0 2740450.0 2548230.0 2369020.0 3002600.0 3137600.0 2872000.0 4046700.0 3058600.0 True False 2549191.1466149604 2924897.4726178027 3126281.5395815927 2870835.6567240907 2670700.6547183576 2795037.3293601326 2985822.301204034 3086323.2237205026 3049445.008001874 2863397.5294007966 0.8902679842531023 1.0214779619614591 1.0918084225056268 1.0025976579384877 0.9327034151898694 0.9761261929792301 1.0427550734909157 1.0778535610339637 1.0649743798025872 1.0 21.44929654489457 2.1348773202288203 5.220558956985346 1.0570125603837774 0.9907688234547827 0.22525314322741885 0.0536387924468322 0.3150057043125029 13.413672662542902 0.02152984394916754 0.015750936121532437 136.4197722747457 -2.1348773202288203 -0.06624373692899477 S(ph)PQLSDFGLER ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQLSDFGLER 11 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER 195.78 6.5792e-08 577140000.0 520356.0 574700.0 451040.0 456289.0 389365.0 566290.0 562300.0 419878.0 614470.0 517060.0 True False 517554.4611129869 593828.542086514 514542.5114900403 514055.14061563474 438948.32480283524 527143.7052032728 535099.4008054014 451211.428457283 463042.10197615647 484060.78812266246 1.0691931133695487 1.2267643995490005 1.0629708584444433 1.0619640202820386 0.906804136119376 1.089003113116638 1.105438436525054 0.9321379453337267 0.9565784160538535 1.0 18.884828706267875 3.8487432349328556 2.3931764577686887 1.0032014669077731 1.1460172130465045 0.3722105936910345 0.07146352127662912 0.3002149342278285 3.34011691853715 0.01971539693646937 0.04268407434024962 7059.000862063496 -3.8487432349328556 0.14281574613873138 S(ph)PQMVSAIVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPQMVSAIVR 10 0 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y7Z0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 S(1)PQMVSAIVR;S(1)PQMVSAIVR;S(1)PQMVSAIVR;S(0.999)PQMVS(0.001)AIVR 82.831 0.01766 1544350000.0 237398.0 245606.0 267003.0 222933.0 273623.0 263458.0 286400.0 282250.0 279457.0 333389.0 True False 236119.87554539737 253780.84723803776 304594.7015683201 251156.29494216433 308467.26715941663 245245.76857342361 272545.7378457534 303312.9282364592 210588.56688194824 312111.82859131735 0.7565233160534115 0.813108712936161 0.9759152767233303 0.8046997003469264 0.9883228987239925 0.7857624931432865 0.8732310437443489 0.971808500835835 0.6747215183494222 1.0 18.25170350880595 S(ph)PQNQYPAELMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQNQYPAELMR 12 0 P33993;P33993-2;C9J8M6 P33993 MCM7 DNA replication licensing factor MCM7 1 S(1)PQNQYPAELMR;S(1)PQNQYPAELMR 146.48 6.7943e-05 196587000.0 102578.0 98573.0 92329.0 91577.0 101548.0 114840.0 111586.0 110185.0 140155.0 119778.0 True False 102025.73144548708 101853.94271636325 105328.12066194549 103170.63881039855 114479.53587784819 106901.38110428197 106188.15888008462 118407.56420809311 105615.67823078138 112133.66549289502 0.9098581679018742 0.9083261683157668 0.9393086384803792 0.9200683698058155 1.0209203041267014 0.9533388624583528 0.9469783977302775 1.0559501795256627 0.9418730562898916 1.0 16.774859952830496 3.533254426489113 0.8719739192161929 0.9938892062477085 0.9022410695413865 0.4093929365462251 0.03626368411913617 0.64459506899977 0.9747533809816218 0.015691779621557767 0.04005200394737805 3413.928541749423 -3.533254426489113 -0.09164813670632199 S(ph)PQPNK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQPNK 6 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 S(1)PQPNK;S(1)PQPNK;S(1)PQPNK 77.318 0.076298 1070770000.0 1577690.0 1347270.0 1256950.0 1408100.0 1464590.0 2898030.0 1606740.0 1463350.0 1861070.0 1543600.0 True False 1569195.892337839 1392113.0675080873 1433917.634394744 1586365.3156242536 1651096.8551949577 2697696.0073288274 1529015.8478571423 1572552.6077407352 1402434.2355603466 1445086.1264575534 1.0858839923849557 0.9633426285260084 0.9922714003972984 1.097765238057491 1.1425594813801263 1.866806384711401 1.0580793904688104 1.0882068403740404 0.9704848796785819 1.0 20.462724048562503 3.37242201423854 3.1681990038020307 1.206700436914349 1.0133773773022683 0.09286096655610476 0.24131023164548498 0.5973782492039001 11.937996144947912 0.07336104469133752 0.10378418437948483 2357.3388533216125 -3.37242201423854 -0.19332305961208074 S(ph)PQPNKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQPNKR 7 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 S(1)PQPNKR;S(1)PQPNKR;S(1)PQPNKR 54.608 0.08123999999999999 870880000.0 993880.0 973700.0 855070.0 866120.0 836980.0 695250.0 966450.0 919340.0 1191180.0 996210.0 True False 988529.0605104495 1006109.0158859193 975456.4235983249 975770.7031947164 943564.4418308721 647189.0039424606 919699.1213024736 987945.8191139289 897629.6499942361 932631.0249017081 1.059935852567882 1.0787857030511667 1.0459189084998863 1.0462558902086223 1.0117231966739646 0.6939389604915505 0.9861339551720387 1.059310480495811 0.9624702867769589 1.0 19.830946897603088 2.9927383090248774 24.53039961319573 0.9469350293819747 1.0547108338326678 0.2723373693416722 0.09054541853235497 426.62459862224785 1441170.4109422 0.029030251592885664 0.03337435324092798 983.4183529868983 -2.9927383090248774 0.10777580445069312 S(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 30 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0;M0R0K8;M0QYI8 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 S(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;S(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK 165.48 5.0795e-12 104126000.0 154318.0 143590.0 138280.0 121801.0 133830.0 154735.0 124156.0 141436.0 232790.0 174350.0 True False 153487.16903434173 148369.30634801195 157748.6220486934 137220.99411146223 150872.45722744346 144038.53365701053 118150.09995802141 151990.6725174555 175422.02372618596 163222.833731455 0.9403535370968314 0.9089984713298076 0.9664617286833278 0.8406972907799609 0.924334259970445 0.8824655862426225 0.7238576690342834 0.9311851108253678 1.0747394817002252 1.0 17.31648336879795 1.394280849318755 5.9847186730818125 1.032324936918991 0.8832758866154218 0.46055195703343244 0.06542444272717085 0.18560218324419675 9.612149489408155 0.04543293340925202 0.01659113550299655 24.790246737122796 -1.394280849318755 -0.1490490503035693 S(ph)PQPPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQPPSR 7 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 S(1)PQPPSR;S(1)PQPPSR 71.922 0.055598 4159700000.0 1198050.0 1425040.0 1206610.0 1296250.0 1334800.0 1283960.0 1258500.0 1203910.0 1378340.0 1310250.0 True False 1191599.8319158691 1472471.5949451274 1376490.1999578702 1460355.1170924925 1504778.8680205585 1195202.8673167375 1197621.5470631307 1293751.8775311098 1038666.5758097485 1226628.723238537 0.9714429552650741 1.2004215840124122 1.1221734611950631 1.1905437150019385 1.2267598495881062 0.9743803032438135 0.9763521140294009 1.0547216553965528 0.8467652486299748 1.0 20.226267208546524 2.7220258747956914 24.80971568802212 0.9809994452507295 1.1470646351530969 0.5240222084585482 0.08150551355153272 605.4591680583278 908466.0333653492 0.02567948001494591 0.0242719931120397 527.2612741437068 -2.7220258747956914 0.1660651899023674 S(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_BT-474_Trastuzumab_2h_R1 27 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 30 0 Q00839;Q5RI18;A0A1W2PRI6;Q00839-2;A0A1W2PPS1;A0A1W2PP35 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK 317.56 2.942599999999999e-92 23902854700.0 1435258.7999999998 1297532.5 1175168.8000000003 1043437.9 991362.8 1274540.8 1142536.0 1098484.5 1673347.9000000001 1300248.5 True False 1427531.5260930432 1340720.0848875393 1340622.3522896795 1175537.0311539026 1117606.9763123244 1186434.794442323 1087267.1687686287 1180458.9913812687 1260973.7317580802 1217265.5275312536 1.1727363453627342 1.101419579018774 1.1013392903753767 0.9657194790835973 0.918129160018975 0.9746721381723027 0.8932046001283913 0.9697629355982564 1.0359068775367948 1.0 20.21521247317579 3.802194734880608 3.013987944124545 0.9576417180327065 1.1322502490426942 0.7638251209997586 0.040878766964069536 0.11794079406750031 2.111532002479063 0.0110129343265027 0.021409462252155717 6341.539981311654 -3.802194734880608 0.17460853100998774 S(ph)PQQSAALPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQQSAALPR 10 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 S(1)PQQSAALPR;S(1)PQQSAALPR;S(1)PQQSAALPR 95.273 0.007903199999999999 1148130000.0 153490.0 215935.0 193135.0 221643.0 210952.0 184475.0 183866.0 190692.0 200952.0 216862.0 True False 152663.62689434216 223122.26593953627 220326.72924048593 249702.9810744312 237815.48678953596 171722.67745744038 174971.69914367047 204922.4053543554 151430.07221884344 203021.6814951011 0.7519572578164561 1.0990070828711966 1.0852374367995883 1.229932582744649 1.1713797513556425 0.8458341798414473 0.8618375035372393 1.0093621717900123 0.7458812827461359 1.0 17.631274281232265 2.7311298739351457 24.980073279588037 0.9002726136861033 1.0792621918121459 0.2856043414865139 0.13742811860069787 755.9464971226582 2541274.6772888075 0.04458209458362626 0.042806731208061645 538.4307738977354 -2.7311298739351457 0.17898957812604255 S(ph)PQQTVPYVVPLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 2 S(1)PQQTVPYVVPLS(1)PK;S(1)PQQTVPYVVPLS(1)PK;S(1)PQQTVPYVVPLS(1)PK 156.73 3.0341000000000007e-06 281068000.0 787010.0 619670.0 548690.0 531520.0 544380.0 755330.0 716020.0 717850.0 1126790.0 765800.0 True False 782772.8256050311 640295.3413515743 625940.7827010239 598810.3775020266 613703.5662069459 703115.8149555683 681383.3771379766 771419.6121684394 849107.7027124419 716925.988365635 1.0918460738039446 0.8931121925308435 0.8730898207888533 0.8352471345991032 0.8560208113057756 0.9807369608102092 0.9504235976872809 1.0760101107884688 1.1843728871485597 1.0 19.45146466487141 1.832882029503542 2.0347753017252543 1.1039713633099986 0.9105449457240422 0.4536622282842184 0.08087656701466009 0.2626859239358729 2.069742604992263 0.052180381864747376 0.02364025786764772 68.05844615885071 -1.832882029503542 -0.19342641758595636 S(ph)PQQTVPYVVPLSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 S(0.999)PQQT(0.001)VPYVVPLSPK;S(1)PQQTVPYVVPLSPK;S(0.988)PQQT(0.012)VPYVVPLSPK 231.06 2.5628e-13 400865000.0 543699.0 542613.0 499878.0 491837.0 490989.0 661066.0 634015.0 637096.0 827080.0 696126.0 True False 540771.7849946371 560673.5456885145 570256.4773825337 554103.5137708159 553513.5388301965 615368.0634019799 603345.2722774971 684639.3386279368 623257.216304197 651698.6426965473 0.8297881099722323 0.8603263977482041 0.8750309422511168 0.8502450020121111 0.8493397140431531 0.9442524858664095 0.9258040952502564 1.0505459023132073 0.9563580088571803 1.0 19.313845464669626 2.3721250875161854 1.4538223714006966 1.0039431858129484 0.8529582543739469 0.8080714422655602 0.030549493057728812 0.15597361960452283 0.6628076788427968 0.015541934423999496 0.010521019979016426 235.57276938366473 -2.3721250875161854 -0.1509849314390015 S(ph)PQREPQR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPQREPQR 8 1 O96013;O96013-4;O96013-2;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 S(1)PQREPQR;S(1)PQREPQR;S(1)PQREPQR;S(1)PQREPQR;S(1)PQREPQR;S(1)PQREPQR 116.84 0.0013291 1268329000.0 231678.0 271357.0 269519.0 289130.0 232172.0 239004.0 282681.0 186370.0 297386.0 288908.0 True False 230430.67138984543 280388.95370622945 307464.93249885633 325733.8283548336 261737.72800874227 222482.21603489906 269006.6400837129 200277.87576768422 224099.2050682399 270469.6440934172 0.8519650039183593 1.0366743914869287 1.1367816655708 1.204326753365079 0.9677157260514639 0.8225773978467475 0.9945908753841557 0.7404818993236464 0.8285558470688804 1.0 18.04510715805118 2.998928579734563 24.968612851754802 0.8646001006096677 1.0646713890906776 0.3640954585774143 0.11154932041267618 39.83365124188223 928332.5357788573 0.033256872550659386 0.039270167514370506 997.5360043016384 -2.998928579734563 0.20007128848100986 S(ph)PQRPGWSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPQRPGWSR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR 114.76 0.00096008 12854230000.0 620654.0 777098.0 719977.0 698453.0 691576.0 740456.0 748894.0 638386.0 870024.0 761173.0 True False 617312.4678251415 802963.2371643389 821343.5034477308 786877.078186001 779644.1043079011 689270.0195659375 712667.1361671002 686025.604978425 655618.2429243153 712594.2874670092 0.8662888247665347 1.1268168315221212 1.1526102831490301 1.1042427535913006 1.0940925545154558 0.9672685168667571 1.0001022302611349 0.9627155550418102 0.920044202507964 1.0 19.442721392547302 2.734350539778533 24.48369862508862 0.9698518687455482 1.078656869323084 0.29140079739583524 0.0762521956385563 323.9850647110225 1884127.9830985626 0.024210553677455404 0.023610000767932716 542.4385417575398 -2.734350539778533 0.10880500057753584 S(ph)PQRPS(ph)DWSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQRPSDWSK 10 1 Q5UIP0-2;Q5UIP0;H7BZN3 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 2 S(1)PQRPS(1)DWSK 56.139 0.07172200000000001 2001800000.0 1369100.0 2347800.0 2258800.0 2345300.0 2184000.0 2151000.0 2068200.0 2061600.0 1966900.0 2393800.0 True False 1361728.917721309 2425945.103724927 2576819.4061584417 2642214.739530974 2462119.454417815 2002306.4329093592 1968153.2647087537 2215447.0605926807 1482183.8501096922 2241025.634564713 0.6076364753345649 1.0825155528379897 1.1498393264291917 1.179020310512506 1.0986574256193398 0.8934777014713972 0.8782377293470983 0.9885862198193905 0.6613863881113458 1.0 21.09572772091584 2.7230557838420513 22.65228445133758 0.8918825230081652 1.042465682142878 0.13448676618799837 0.1727345952649413 464.4276031593444 678517.4708090292 0.05600179057071836 0.05303708148642056 528.5131333647322 -2.7230557838420513 0.15058315913471276 S(ph)PQTLAPVGEDAMK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPQTLAPVGEDAMK 14 0 Q92797 Q92797 SYMPK Symplekin 1 S(0.516)PQT(0.484)LAPVGEDAMK;S(0.957)PQT(0.043)LAPVGEDAMK;S(0.951)PQT(0.049)LAPVGEDAMK;S(0.996)PQT(0.004)LAPVGEDAMK;S(1)PQTLAPVGEDAMK;S(0.982)PQT(0.018)LAPVGEDAMK 268.17 4.1921e-25 2580450000.0 2869950.0 2329580.0 2081031.0 1958952.0 1942539.0 2607550.0 2505830.0 2424060.0 3315220.0 2482700.0 True False 2854498.508081423 2407118.6620391547 2374022.0761542893 2206955.1223441246 2189909.8273192896 2427296.2060124604 2384613.429699807 2604955.666327268 2498228.452672048 2324251.960453592 1.228136431268988 1.035653063005007 1.0214133908661884 0.9495335100904568 0.9421998408864052 1.0443343696432803 1.025970277867136 1.1207716334759572 1.0748526817137776 1.0 21.14833504185038 -0.020636716458005078 7.685570426101308 1.0000041580444647 1.0461837295713194 0.03334865794040587 0.0779630889252768 5292096.92122378 688575.5948202357 0.07793400866926778 0.018901773509778338 0.9535935031324622 0.020636716458005078 0.0461795715268547 S(ph)PQVPAAQQMLNFPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQVPAAQQMLNFPEK 16 0 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 S(1)PQVPAAQQMLNFPEK 68.044 0.052547 43212000.0 41337.0 44536.0 47164.0 49730.0 41508.0 51326.0 43583.0 34204.0 57916.0 46539.0 True False 41114.446184972454 46018.35383741949 53804.281243163045 56025.81290106823 46793.797762808885 47777.954428408055 41474.7237867719 36756.47616439271 43643.37783463978 43568.841175957525 0.9436662779009263 1.05622166198016 1.2349256898036047 1.2859146901521172 1.0740197925812858 1.0966083361146 0.9519354352178361 0.8436413540573106 1.0017107790033073 1.0 15.411009121172224 2.256288684428504 3.374152808995393 0.9230312233130685 1.1274948244858947 0.3985165807255998 0.09839682375641096 0.22199612297922372 5.307674412941732 0.041174867882797936 0.03123412513092953 180.42166420675795 -2.256288684428504 0.20446360117282614 S(ph)PRPAS(ph)PASNVVVLPSGSTVYVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPRPASPASNVVVLPSGSTVYVK 23 1 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 2 S(0.992)PRPAS(0.893)PAS(0.115)NVVVLPSGSTVYVK;S(1)PRPAS(0.995)PAS(0.005)NVVVLPSGSTVYVK 162.49 9.4224e-12 438360000.0 381990.0 359620.0 276038.0 277940.0 291610.0 390600.0 342180.0 343310.0 422820.0 370420.0 True False 379933.4082830792 371589.7343051193 314901.75103469274 313127.17550216994 328744.8049921147 363598.74137349887 325627.44614546065 368929.5354928565 318621.67649772734 346779.478467483 1.0956052242829155 1.071544763684633 0.9080749311531726 0.9029576285366361 0.9479938272152993 1.0485013213017822 0.93900437126355 1.0638736096012973 0.9188019945868972 1.0 18.40365900047871 4.362731153818396 6.938992677320631 0.9720286887923992 1.0892352344750273 0.43534638145813187 0.053400883481262505 0.1994222046765644 11.078976178780119 0.013582323537818481 0.037789029090428576 23053.19659044477 -4.362731153818396 0.11720654568262812 S(ph)PRPDHPGT(ph)PPHK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 2 S(1)PRPDHPGT(1)PPHK;S(1)PRPDHPGT(1)PPHK;S(1)PRPDHPGT(1)PPHK;S(1)PRPDHPGT(1)PPHK 129.15 0.0023947 1143940000.0 791760.0 729300.0 578070.0 553830.0 593270.0 792140.0 779470.0 516720.0 1055160.0 817180.0 True False 787497.2521328066 753574.309628841 659457.2313254862 623944.8212145314 668819.4179132129 737381.2262969875 741764.0582354368 555280.2702509948 795129.9564196162 765026.8727770038 1.029372013134959 0.9850298550865401 0.8620053161422868 0.8155854956436333 0.8742430386601149 0.9638631694339518 0.9695921602634371 0.7258310655616047 1.0393490538879242 1.0 19.54515090007373 4.3706234466762695 4.524011284882849 0.8893626473840669 1.0194799635472227 0.15507814637349526 0.08952561313240873 0.2931767845025385 10.006377536687241 0.021832861638581672 0.06566875354550632 23475.96463880416 -4.3706234466762695 0.1301173161631558 S(ph)PRPDHPGTPPHK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 1 S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK 156.49 2.4905e-05 2014610000.0 1485945.0 1486140.0 1279144.0 1170132.0 1268290.0 1554360.0 1445920.0 974076.0 1789650.0 1462020.0 True False 1477944.8372240108 1535605.2715093996 1459236.3566810386 1318270.5912236634 1429799.2137562134 1446910.7517698682 1375975.3256492035 1046766.4973777052 1348614.737581377 1368712.6319017054 1.0798065297099926 1.1219340245116403 1.0661378602559972 0.9631463614038857 1.0446306846526532 1.0571326062502349 1.005306222488359 0.7647817905525688 0.9853162060085584 1.0 20.38438814663633 1.9698185872681022 12.973797468216437 0.8891588915381207 1.0523685025270058 0.41591356001064805 0.07129279588852563 1.6261034998931085 697.5814689214858 0.029042687206640112 0.01885964715364618 93.28645448514068 -1.9698185872681022 0.1632096109888851 S(ph)PRPQQDPARPQEPTMPPPETPSEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPRPQQDPARPQEPTMPPPETPSEGR 26 2 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;P29590-14;P29590-10;P29590-12;P29590-13;P29590-11;H3BT57 P29590-2;P29590-12 PML Protein PML 1 S(1)PRPQQDPARPQEPTMPPPETPSEGR;S(1)PRPQQDPARPQEPTMPPPETPSEGR 83.28299999999999 0.0076431 1099770000.0 171988.0 192719.0 199654.0 214258.0 210431.0 220560.0 203010.0 196653.0 234590.0 204028.0 True False 171062.03571766315 199133.53541390432 227763.5477763222 241383.04083163256 237228.1405277452 205313.2063423933 193189.63072648871 211328.24544370026 176778.43784495015 191006.7583628411 0.8955810631198167 1.0425470654584137 1.1924371144169517 1.2637408377618526 1.241988202726842 1.0749002187261631 1.011428246740364 1.1063914557528691 0.9255088111025764 1.0 17.543264160258346 2.483847356476345 20.84007790377717 1.0305002475456357 1.136224816991062 0.1962757360373104 0.1074093444046793 66.88587131043013 207248.5565677839 0.039401830238407265 0.03429247337469691 304.68239198824256 -2.483847356476345 0.1057245694454263 S(ph)PRPSPVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPRPSPVPK 9 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(1)PRPSPVPK;S(0.983)PRPS(0.017)PVPK;S(0.989)PRPS(0.011)PVPK;S(0.998)PRPS(0.002)PVPK 88.021 0.0079132 1785500000.0 1736660.0 1620350.0 1349380.0 1217040.0 1399160.0 1654980.0 1514210.0 1644560.0 1892040.0 1542900.0 True False 1727310.015521064 1674282.3702277418 1539360.974978781 1371117.1392140766 1577334.7325289517 1540575.1280038713 1440961.8774560688 1767285.4181064707 1425772.0940370837 1444430.8010568535 1.195841305971345 1.1591295124714258 1.0657215104056694 0.9492439085422887 1.0920112831814828 1.0665620858241678 0.9975984148231631 1.2235168460914796 0.9870823115886772 1.0 20.462069659094862 4.299884684229436 3.921490033282086 1.0599179590825376 1.1863952774634088 0.3316601678771769 0.07281293947108065 0.2732134772195868 8.260163381437206 0.0187935660527503 0.05609681967693892 19947.32594521116 -4.299884684229436 0.12647731838087117 S(ph)PRPTGSDLLPGAPILSLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SPRPTGSDLLPGAPILSLR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 S(0.964)PRPT(0.035)GS(0.001)DLLPGAPILSLR;S(0.999)PRPT(0.001)GS(0.001)DLLPGAPILSLR;S(1)PRPTGSDLLPGAPILSLR;S(0.992)PRPT(0.007)GS(0.001)DLLPGAPILSLR;S(0.916)PRPT(0.077)GS(0.007)DLLPGAPILSLR 127.49 1.92e-05 505290000.0 444701.0 508601.0 517141.0 449910.0 495488.0 527877.0 477421.0 489552.0 603835.0 532602.0 True False 442306.7792269254 525529.4768292035 589949.9577298482 506868.5598696886 558585.4598125342 491386.1054787974 454326.32230466994 526084.8561346856 455027.95522445743 498610.8843764865 0.887078066456633 1.0539871737585087 1.1831870827841662 1.0165613622805856 1.1202833257662355 0.985510186151023 0.9111841248167006 1.0551010269111059 0.9125913001146585 1.0 18.92755485077723 2.584611224987406 8.8655538840166 0.9767328972877434 1.0574850529943265 0.19219108201748025 0.08097314024216469 0.5786936258953371 43.68306272045669 0.026111850313222558 0.024594211879672978 384.24765432320726 -2.584611224987406 0.08075215570658312 S(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSPAPAPAPAAAAGPPTR 19 0 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 2 S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR 212.37 1.2466e-16 1414240000.0 568769.0 607406.0 478881.0 507919.0 520536.0 661730.0 580849.0 554167.0 775020.0 604249.0 True False 565706.8109001758 627623.1415253194 546303.2822917304 572221.4933218922 586823.1741414058 615986.1626448666 552751.114811341 595521.7555430077 584026.7057359373 565685.3114964045 1.000038005943118 1.109491671023013 0.9657370824188402 1.0115544485470158 1.0373668225343973 1.0889202002000045 0.9771353499512854 1.0527438903578337 1.032423317110735 1.0 19.109640185092506 4.24313544671437 24.999992485686505 1.0244349209577723 1.0547647938966473 0.09000170206347513 0.04198394360062318 294.64465935659643 1610083.88423901 0.009774911163467941 0.02490209117756735 17503.925116952978 -4.24313544671437 0.030329872938875013 S(ph)PS(ph)PAPEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPAPEKK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(1)PS(1)PAPEKK;S(1)PS(1)PAPEKK 98.943 0.0037911 155860000.0 826790.0 548357.0 397469.0 424796.0 453163.0 590201.0 650890.0 635355.0 1063720.0 689490.0 True False 822338.6545050052 566608.7312561932 453429.18033751956 478575.130044685 510870.62194246374 549401.7940537127 619403.9640587375 682768.4163673187 801580.4591177403 645486.1578979121 1.273983406837151 0.877801521106834 0.7024615087241458 0.7414181143763191 0.7914509330551149 0.8511441916010913 0.9595929463086958 1.0577584166805682 1.241824397486949 1.0 19.30002663248491 1.8227334787565235 2.1655264904620286 1.1233936917593 0.856966767902426 0.29055746639384716 0.15740453048055966 0.36153046751344325 3.235310960251144 0.10190204360998376 0.04664732302209945 66.4865011403601 -1.8227334787565235 -0.26642692385687394 S(ph)PS(ph)PAPPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSPAPPPR 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR 82.831 0.025352 1756500000.0 1717420.0 1726380.0 1387940.0 1491330.0 1473030.0 1792960.0 1758230.0 1580030.0 2037000.0 1653320.0 True False 1708173.6015432982 1783841.5146812536 1583349.8878092535 1680132.2250904895 1660611.639167158 1669016.895373854 1673177.697809143 1697939.861829769 1535008.6444015682 1547803.7021215346 1.1036112649181216 1.1524985450262124 1.0229655644569118 1.0854943832913537 1.0728825863970997 1.0783130270887553 1.0810012248425052 1.0969994835278187 0.9917334105723946 1.0 20.56179108477735 -4.999999994248506 0.07372323991974178 0.7052733566941883 1.1773827401736665 0.4100274482478996 0.03628806895229987 299.74787363143815 1.5823653651609118 14.481536703834287 1.6237409157397842 1.0000000132433053e-05 4.999999994248506 0.4721093834794782 S(ph)PS(ph)PAPPPRR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSPAPPPRR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(1)PS(1)PAPPPRR;S(1)PS(1)PAPPPRR;S(1)PS(1)PAPPPRR;S(1)PS(1)PAPPPRR 122.39 0.0017139 1639533000.0 807477.0 802963.0 598375.0 754350.0 760907.0 856686.0 821930.0 703953.0 1056820.0 776878.0 True False 803129.6335511279 829689.1380536155 682620.998831262 849850.6326547511 857803.9962008678 797465.3132419281 782170.105822486 756485.5474609045 796380.8716624759 727296.980921282 1.1042664202095094 1.1407845210668017 0.9385725731551532 1.168505651677844 1.1794411618679759 1.0964782395105814 1.075448030640379 1.0401329406079052 1.0949871820637616 1.0 19.472185061985083 1.02115589215931 0.7206872344409583 1.0048190501318053 1.1023717871441179 0.16411272406420874 0.06488361881631938 1.353878995534105 1.6195615121603457 0.06431174648030509 0.025156179608342145 10.499192347392269 -1.02115589215931 0.0975527370123126 S(ph)PS(ph)PEPIYNSEGK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPSPEPIYNSEGK 13 0 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 2 S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK 244.86 6.681600000000001e-17 3561530000.0 7049270.0 5218380.0 4422030.0 3977260.0 4404270.0 6126980.0 5434440.0 5677860.0 7093220.0 5330660.0 True False 7011317.513567527 5392070.623722681 5044613.387026206 4480780.708202346 4965127.678346498 5703436.293959541 5171555.375623173 6101570.7447888795 5345190.975278388 4990452.714992365 1.4049461870471311 1.0804772495937636 1.0108528574714537 0.8978705869191271 0.9949253027546409 1.1428695189967886 1.0362898259884796 1.2226487441627256 1.0710833827200317 1.0 22.250739266660016 4.736271779408723 4.85784412685042 1.0584434012727149 1.422990806904747 0.6162568828441695 0.0838204489523508 0.13068103461513916 9.1318063313899 0.022732482823577187 0.16080246765476458 54484.3506638397 -4.736271779408723 0.36454740563203214 S(ph)PS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 2 S(0.978)PS(0.573)PGPNHT(0.349)S(0.073)NS(0.014)S(0.013)NASNATVVPQNSSAR;S(0.999)PS(0.981)PGPNHT(0.008)S(0.007)NS(0.002)S(0.002)NASNATVVPQNSSAR 100.88 0.00069583 1044100000.0 62689.0 124147.0 133197.0 146948.0 140662.0 129763.0 154033.0 140964.0 115924.0 133581.0 True False 62351.48938940268 128279.15784655379 151949.97983092166 165551.60173308197 158574.47193100682 120792.78923924541 146581.83532679785 151483.44948068832 87356.08350201645 125055.74621555202 0.4985895592668784 1.0257757978225626 1.2150579595839879 1.3238224291407559 1.2680302723369492 0.9659115466077123 1.172131947252887 1.2113273805074438 0.698537141599598 1.0 16.932211824208533 4.723064625468682 3.3820938969229983 1.1301705509834374 0.42704810146455213 0.5168218127083795 0.17405265565991673 0.21818182451679669 4.2449469605569865 0.0416124831253286 0.38850558816205605 52852.38932605097 -4.723064625468682 -0.7031224495188853 S(ph)PS(ph)PKPTK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPSPKPTK 8 1 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BV80 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 2 S(0.992)PS(0.537)PKPT(0.471)K;S(0.979)PS(0.665)PKPT(0.356)K;S(0.989)PS(0.675)PKPT(0.335)K;S(1)PS(0.984)PKPT(0.016)K;S(1)PS(0.996)PKPT(0.004)K 71.555 0.027562 19933320000.0 6972090.0 4941820.0 3481220.0 3905730.0 4085520.0 4410910.0 5600160.0 5560240.0 9156340.0 5651630.0 True False 6934553.042112014 5106305.49130672 3971345.5166933266 4400195.01753648 4605786.755225765 4105994.1738652843 5329258.866111294 5975173.343126631 6899882.6956700245 5290938.134796117 1.3106471603790983 0.9651039874620436 0.7505938295848851 0.831647414018769 0.8705047456396399 0.7760427488013911 1.0072427101468375 1.1293220957982115 1.304094381730265 1.0 22.33509211820822 1.8292306938834293 3.0485952009440465 1.164941720168048 0.9057634561165374 0.2735000677220082 0.16264944984890073 0.30515464474362597 5.0897512470905415 0.09042680560586133 0.045917225536014225 67.48864269714048 -1.8292306938834293 -0.2591782640515107 S(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPLRGNVVPSPLPTR 17 1 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 S(1)PS(1)PLRGNVVPS(1)PLPTR;S(1)PS(1)PLRGNVVPS(0.998)PLPT(0.002)R 127.16 6.9286e-05 418820000.0 240380.0 310790.0 191900.0 286200.0 290580.0 338930.0 358120.0 288600.0 377070.0 373520.0 True False 239085.82078872892 321134.45727347804 218917.85197529852 322432.89065525326 327583.64059740317 315500.56685540156 340796.3674487469 310136.79748110555 284146.1509791358 349681.6338134395 0.6837242727946211 0.9183623794345692 0.6260490423471726 0.9220755666775342 0.9368053935946034 0.9022508943770433 0.9745904116616173 0.8869118863891154 0.8125852875954364 1.0 18.415682498376075 3.697571945029163 24.728713615052797 0.9163031138781562 0.7602769138589436 0.47414638600250203 0.08458332557983396 376.45010615794655 227114.56456023394 0.020911635877673182 0.0323965792938683 4983.93012695222 -3.697571945029163 -0.15602620001921264 S(ph)PS(ph)PLRGNVVPSPLPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPLRGNVVPSPLPTR 17 1 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 S(1)PS(1)PLRGNVVPSPLPTR 99.366 0.00090969 162130000.0 80771.0 115200.0 83322.0 98930.0 92791.0 107360.0 117620.0 97841.0 124540.0 118640.0 True False 80336.13791050174 119034.36236012931 95053.01335219303 111454.52785647857 104607.38383465352 99938.45589825607 111930.2712479661 105142.39224653099 93848.78575050143 111068.29362718589 0.7233039717001475 1.0717222572958804 0.8558069116578843 1.0034774481238464 0.9418293953968611 0.8997928448753479 1.007760789264248 0.9466463273439141 0.8449646851109118 1.0 16.761087507588517 4.759935514109584 24.430469203890826 0.9498578079625118 0.7233036579225162 0.5062875045082296 0.06783982543834152 3132.2596073990326 3579942.351444218 0.01469385579079393 0.6684706942560144 57535.449991286536 -4.759935514109584 -0.22655415003999568 S(ph)PS(ph)PSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 S(1)PS(0.922)PS(0.078)FR;S(1)PS(0.992)PS(0.008)FR 102.01 0.012714 865600000.0 613230.0 669820.0 498040.0 625090.0 627190.0 644010.0 600900.0 612450.0 734560.0 637010.0 True False 609928.4378162582 692114.5537852589 568159.7029587169 704226.3299080776 707058.928853621 599491.1045364747 571832.1713390823 658154.1289580854 553537.5305997131 596355.4764283015 1.022759850331631 1.1605738207192775 0.9527198548784107 1.1808834793063985 1.185633329114953 1.005257984930319 0.9588780416068374 1.1036272072152487 0.92820063280875 1.0 19.185813025260938 2.6879197420678635 24.91701523212966 1.0102930996735562 1.1001049530375449 0.2831100717209625 0.0796408387636742 514.6187316206352 253209.00603467677 0.025485835867313893 0.024028283273265266 487.43840281265983 -2.6879197420678635 0.08981185336398867 S(ph)PS(ph)PSPTPEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPSPTPEAK 11 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 S(1)PS(0.894)PS(0.106)PTPEAK 151.16 4.9042e-05 247250000.0 686930.0 539120.0 416820.0 425590.0 464100.0 629840.0 604340.0 572750.0 843490.0 553850.0 True False 683231.6452050983 557064.2832950776 475504.6329356126 479469.6503632737 523200.3840637858 586300.6432838825 575105.7653970055 615491.5133655695 635623.1916869316 518502.8188251586 1.317700927360796 1.0743707904178668 0.9170724163332945 0.9247194671953229 1.0090598644174609 1.1307569062253944 1.1091661308613516 1.1870552888413823 1.2258818440508161 1.0 18.98399230666533 2.650202217780148 5.061236421368852 1.1455573319267347 1.0360390362928786 0.09755227790695353 0.11784070249273493 0.44242388643353825 18.941988342161288 0.04038257753252334 0.03806299694194267 446.89162702301576 -2.650202217780148 -0.10951829563385607 S(ph)PS(ph)PYYSR ddPTM_BT-474_Trastuzumab_2h_R1 7 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 S(0.999)PS(0.699)PY(0.302)YSR;S(1)PS(0.996)PY(0.004)YSR;S(0.994)PS(0.927)PY(0.078)YSR;S(1)PS(0.995)PY(0.005)YSR;S(0.999)PS(0.939)PY(0.061)Y(0.001)SR;S(1)PS(0.997)PY(0.003)YSR;S(1)PS(0.988)PY(0.012)YSR 121.61 0.0020847 9668640000.0 6159800.0 6367260.0 4617470.0 5456850.0 5115560.0 6145540.0 5794450.0 5312180.0 6740660.0 5755230.0 True False 6126636.321218123 6579190.40001005 5267569.640231271 6147686.650496559 5766996.243700358 5720713.284845084 5514150.316551412 5708601.8463034695 5079514.663216431 5387926.294099707 1.137104701659964 1.2210988125830324 0.9776617853885199 1.1410116462114306 1.070355444545663 1.0617653198244026 1.02342719917864 1.0595174348533558 0.942758750946349 1.0 22.36129868444062 7.739069623536297 0.19255243329309532 0.9756623153677523 1.8021172786953452 0.44063931153350944 0.05979197220976403 42.83204740570678 0.5506723913894205 0.11100462897876213 10.357266400082075 54836486.850415066 -7.739069623536297 0.8264549633275929 S(ph)PS(ph)YGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSYGR 6 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 S(1)PS(1)YGR 92.491 0.068267 1061900000.0 921860.0 766360.0 534440.0 641540.0 633540.0 503520.0 666990.0 721210.0 870710.0 774350.0 True False 916896.8081882749 791867.8293255977 609684.5065642456 722758.898221422 714217.5637142236 468712.8475585866 634725.1455507646 775030.3524301739 656135.1874162434 724930.3200456108 1.2648068136129085 1.092336473491377 0.8410249781329132 0.9970046475307418 0.9852223640877468 0.6465626207069066 0.8755671103821804 1.0691101351387964 0.9051010411248367 1.0 19.467482805073637 4.49279635151473 3.3436290300129397 0.9193968490788009 1.2518861053247272 0.5005238188253249 0.11127061350509569 0.21307328401282594 4.670891971275046 0.0291022895770062 0.13202093860480998 31102.575394641677 -4.49279635151473 0.3324892562459263 S(ph)PSAGDVHILTGFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSAGDVHILTGFAK 15 0 A0A3B3ITL0;A0A3B3IRJ9;Q9Y2H2-4;Q9Y2H2 A0A3B3ITL0 INPP5F Phosphatidylinositide phosphatase SAC2 1 S(0.993)PS(0.007)AGDVHILTGFAK 192.24 9.1562e-08 118480000.0 157910.0 151270.0 133630.0 123860.0 141440.0 161500.0 157060.0 146160.0 176070.0 171500.0 True False 157059.83010545027 156304.93050535396 152443.942467218 139540.66330034813 159451.5456194396 150335.88513010766 149462.40777253514 157067.20138544167 132679.90771712517 160554.72317146283 0.978232387082875 0.9735305658895481 0.9494827648540554 0.8691159035622207 0.9931289623236739 0.9363529279020832 0.9309125562934591 0.9782782984073493 0.8263843323714057 1.0 17.29270558108142 4.15818812845826 4.394624571246454 0.9357985350455076 0.9761644290559559 0.0967197194388354 0.05070897954659165 0.4802075086173389 17.010689815437622 0.012053825405338005 0.028673293888041716 14394.219746023768 -4.15818812845826 0.04036589401044832 S(ph)PSAIPEQNHSLNDQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSAIPEQNHSLNDQAK 17 0 Q13129 Q13129 RLF Zinc finger protein Rlf 1 S(0.957)PS(0.043)AIPEQNHSLNDQAK;S(0.91)PS(0.09)AIPEQNHSLNDQAK 83.404 0.0035674 765160000.0 273358.0 230061.0 228490.0 231985.0 206276.0 314571.0 287315.0 262415.0 410783.0 315769.0 True False 271886.270900929 237718.44131018894 260659.4059293175 261354.27721404182 232544.02590635957 292825.4471904831 273416.4758001137 281997.7398163699 309551.0338601911 295616.35207655793 0.9197267640678978 0.804145101041722 0.881748942838631 0.8840995275740261 0.7866412810822316 0.9905590307624389 0.9249030842830542 0.953931465006844 1.0471377232204815 1.0 18.173366549087568 2.1298716399403417 0.9242150803864412 1.0111854883009017 0.8567287592613665 0.5760229951734 0.051547488064894176 0.40903266523119475 0.6524860098078097 0.03910096525444681 0.020612816442413036 134.85642420901488 -2.1298716399403417 -0.15445672903953522 S(ph)PSAMQQQDGLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSAMQQQDGLDR 13 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47;O60343-4;O60343-5 O60343-2 TBC1D4 TBC1 domain family member 4 1 S(1)PSAMQQQDGLDR;S(0.999)PS(0.001)AMQQQDGLDR 223.26 1.6869e-11 624370000.0 174400.0 165694.0 163070.0 163555.0 137946.0 144643.0 132407.0 138674.0 159697.0 145204.0 True False 173461.04977766168 171209.02462586178 186028.8385701507 184261.0462303281 155512.60543000008 134644.16986299798 126001.96756614056 149022.55805230388 120341.81418016546 135936.95640460108 1.2760404114196462 1.2594737233653912 1.368493480289913 1.355488978890301 1.1440053502973413 0.9904898081007841 0.9269147323786614 1.0962622821181531 0.8852766559079164 1.0 17.05257820113461 2.99260602564883 3.0083517385269762 0.9912676990503462 1.3141315672740497 0.8702690824099641 0.06076787476662006 0.09010187552692477 1.665998101456172 0.019561503439244895 0.02251636930684423 983.1188555377078 -2.99260602564883 0.3228638682237035 S(ph)PSAQCPFPGGTVLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSAQCPFPGGTVLSR 16 0 P78411-3;P78411-2;P78411;H0YML8 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 S(0.943)PS(0.057)AQCPFPGGTVLSR;S(0.997)PS(0.003)AQCPFPGGTVLSR 243.37 5.6418e-20 624900000.0 74573.0 78842.0 71706.0 61814.0 76733.0 85484.0 78206.0 80449.0 83812.0 96407.0 True False 74171.50725383921 81466.20830900459 81801.58152027498 69639.64606206777 86504.49271787642 79574.69228769104 74422.87700406772 86452.51289174467 63157.655623261744 90254.22272181479 0.8218065040840652 0.9026304349227297 0.9063463077224333 0.7715943250291335 0.9584536890257651 0.8816727892384534 0.8245916341605081 0.957877762220745 0.6997750766513033 1.0 16.46170681246121 S(ph)PSASSLSSMSSVASSVSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSASSLSSMSSVASSVSSR 20 0 J3KP58;P30622-2;P30622-1;P30622;F5H0N7;F5H6A0;F5H1T5 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 S(0.953)PS(0.047)ASSLSSMSSVASSVSSR;S(0.77)PS(0.23)AS(0.001)SLSSMSSVASSVSSR 212.41 1.8408e-22 419400000.0 44519.0 50508.0 53567.0 47632.0 59027.0 63178.0 56316.0 49546.0 42816.0 54165.0 True False 44279.314650525885 52189.12824726923 61108.7679872893 53662.206316181015 66543.73856956055 58810.65356501507 53591.77993198827 53243.37410949021 32264.570505006144 50708.143327010424 0.8732190087295085 1.0292060569188686 1.2051075818967885 1.0582561852071808 1.312288997458029 1.1597871605306582 1.0568673277264686 1.0499965215868858 0.6362798633137876 1.0 15.62992983080368 1.3976291992977512 6.207066558994565 0.8180379143570852 1.1039009022353268 0.3959704784154493 0.13660813103298775 0.1969546049847449 11.09864899481304 0.09134157613174076 0.033528785540856386 24.982114774878603 -1.3976291992977512 0.2858629878782416 S(ph)PSASSLSSMSSVASSVSSRPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSASSLSSMSSVASSVSSRPSR 23 1 J3KP58;P30622-2;P30622-1;P30622;F5H0N7;F5H6A0;F5H1T5 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 S(0.944)PS(0.055)AS(0.001)SLSSMSSVASSVSSRPSR 82.65 0.0051279 241940000.0 0.0 0.0 7593.8 9257.2 7055.1 7162.2 6892.7 7917.9 11592.0 13590.0 True False 0.0 0.0 8662.941033507153 10429.160570837905 7953.525166146122 6667.093972005305 6559.273768328995 8508.77390428152 8735.306924841914 12722.67456501564 0.0 0.0 0.6809056530714227 0.8197302004026449 0.6251456897291425 0.5240324224230527 0.5155577732346824 0.6687881436249767 0.6865935994984853 1.0 13.635114365901277 4.23934408744252 24.99999999999972 0.6658825688489843 1.047526975786304e-05 0.8076571694245592 0.13429264920299577 7.715955437606642 246168.64641530535 0.03238119906459908 0.07881536282385779 17351.7821871055 -4.23934408744252 -0.6658720935792265 S(ph)PSDSSTASTPVAEQIER ddPTM_BT-474_Trastuzumab_2h_R1 7 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-3;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 S(0.998)PS(0.002)DSSTASTPVAEQIER;S(0.99)PS(0.01)DSSTASTPVAEQIER;S(1)PSDSSTASTPVAEQIER;S(0.911)PS(0.089)DSSTASTPVAEQIER;S(0.997)PS(0.003)DSSTASTPVAEQIER;S(0.781)PS(0.219)DS(0.001)STASTPVAEQIER;S(0.964)PS(0.036)DSSTASTPVAEQIER 387.62 1.638299999999999e-126 9304710000.0 1014766.0 1132460.0 969744.0 915806.0 992595.0 1092669.0 969273.0 1010234.0 1100070.0 1080172.0 True False 1009302.6126071025 1170153.2465134745 1106275.5260340488 1031746.9457002956 1118996.0896785033 1017135.3638961571 922385.5620075649 1085622.790944309 828972.4886827847 1011234.4981782254 0.9980895770717838 1.157153210873983 1.0939851518387111 1.020284560662264 1.10656439400991 1.0058353089501617 0.9121381476495067 1.073561862159664 0.8197628642774826 1.0 19.947686156209027 2.5510564552004427 4.85475766546573 0.9671240533355718 1.077076776899691 0.3792820402327509 0.07367238658546962 0.2496280169516518 10.883944842493415 0.023607343699862 0.021848170257747702 355.6775511213568 -2.5510564552004427 0.10995272356411911 S(ph)PSELFAQHIVTIVHHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSELFAQHIVTIVHHVK 18 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.874)PS(0.126)ELFAQHIVTIVHHVK;S(0.984)PS(0.016)ELFAQHIVTIVHHVK 240.41 9.932e-24 2542600000.0 1400870.0 1909650.0 1737580.0 1501870.0 1431140.0 1742300.0 1665520.0 1082460.0 2270500.0 1647190.0 True False 1393327.8715712873 1973211.5458421991 1982216.1606838964 1692006.5880097982 1613387.1959686417 1621858.9019330423 1584952.4346957358 1163238.6618205057 1710965.698141267 1542064.9239696923 0.9035468286150263 1.2795904473091955 1.2854297700910904 1.097234339300135 1.046251147335189 1.0517448887676784 1.0278117412953272 0.7543383185359114 1.1095289644075286 1.0 20.55643207615775 2.7086743129645336 1.2412869938024576 0.9335045688254814 1.1603823945988772 0.21645172531051915 0.13291887210751058 0.5300144618106923 1.6794732986909586 0.06384639655272818 0.058197330108237834 511.29825786176235 -2.7086743129645336 0.22687782577339577 S(ph)PSFASEWDEIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.561)PS(0.439)FASEWDEIEK 182.33 1.1851e-05 33725000.0 53594.0 44152.0 33444.0 42612.0 45071.0 48186.0 53460.0 47217.0 72214.0 49259.0 True False 53305.45585885318 45621.57262955239 38152.62449954084 48006.67483089324 50810.52469325337 44855.015237643136 50873.935562967774 50740.57230306785 54417.827318023934 46115.24844724837 1.1559182191077155 0.9892947379810672 0.8273320817773313 1.0410152053242971 1.1018161324963036 0.9726720932438035 1.1031911846070375 1.1002992288138798 1.1800397731841985 1.0 15.492956249981917 2.2230081597207567 24.112274143716135 1.1037810746521761 1.0101638046437007 0.15784133642039055 0.09080928876829561 270.2186146950894 418938.27286732843 0.03461378470688973 0.02566476742811577 167.1122011810416 -2.2230081597207567 -0.09361727000847542 S(ph)PSFGDPQLS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSFGDPQLSPEAR 14 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 2 S(0.998)PS(0.002)FGDPQLS(1)PEAR;S(0.989)PS(0.011)FGDPQLS(1)PEAR 152.89 9.5627e-06 281980000.0 252940.0 303620.0 274640.0 291790.0 291180.0 337230.0 327890.0 271720.0 281690.0 305370.0 True False 251578.19914427577 313725.80815783434 313306.92478632636 328730.58408209705 328260.0470409248 313918.0838540318 312028.70803856134 291997.1261662025 212271.27395261556 285881.0251595894 0.880010133599582 1.0973998990758513 1.0959346623702177 1.1498859845580427 1.148240065452675 1.098072471507303 1.0914635130623842 1.0213938683170694 0.7425161352843123 1.0 18.125055341287172 1.4339366739438404 5.278589848400581 0.8697928040117971 1.084826053242649 0.4435915559186374 0.09187670890667196 0.15773867645707793 8.241022423118222 0.05875225404955429 0.022356734340331724 27.160432038372505 -1.4339366739438404 0.21503324923085188 S(ph)PSFGDPQLS(ph)PEARPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSFGDPQLSPEARPR 16 1 O95425-2;O95425-3 O95425-2 SVIL Supervillin 2 S(0.896)PS(0.105)FGDPQLS(1)PEARPR;S(0.987)PS(0.015)FGDPQLS(0.998)PEARPR;S(0.989)PS(0.011)FGDPQLS(1)PEARPR 130.89 0.00056833 1064190000.0 428020.0 490755.0 411926.0 486080.0 486086.0 533079.0 512160.0 569420.0 573757.0 555003.0 True False 425715.5878774921 507089.48350733746 469921.60027502273 547617.6781610948 547986.1708425547 496228.50346298807 487384.86415880226 611913.0118561721 432362.27529990673 519582.2333780259 0.8193420800971837 0.9759561642639939 0.9044219953785984 1.0539576663366614 1.054666875885772 0.9550528705279139 0.938032197502415 1.1777019546605056 0.8321344486491292 1.0 18.986992574476574 5.785529460217577 0.8255623716875432 1.0124981930845418 1.1903200619048956e-09 0.23159517741053992 0.09005019701906017 15.29258113240747 2.173340952130729 0.029237573418715183 21.149657242825953 610280.4534063168 -5.785529460217577 -1.0124981918942217 S(ph)PSGHPHVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSGHPHVR 9 0 Q8WX93-8;Q8WX93-3;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93;Q8WX93-4;Q8WX93-7 Q8WX93-8 PALLD Palladin 1 S(0.999)PS(0.001)GHPHVR;S(0.999)PS(0.001)GHPHVR;S(0.984)PS(0.016)GHPHVR;S(0.981)PS(0.019)GHPHVR 137.89 9.7801e-05 1247210000.0 217614.0 282078.0 254730.0 292143.0 289323.0 276243.0 278583.0 74922.4 298605.0 235929.0 True False 216442.39040318847 291466.79571024806 290593.769847149 329128.2738459034 326166.56909822585 257146.97161607587 265106.87599959306 80513.48993623833 225017.7988520032 220871.80923102074 0.9799457484264127 1.3196197229741915 1.315667086980768 1.4901325569423478 1.476723400029164 1.164236271307549 1.2002748423285865 0.3645258768719791 1.0187710221391177 1.0 17.752849767833588 1.9147097193007787 7.7361583336282855 0.734056334533072 1.300530476675277 0.504775752481025 0.21850537319698793 0.2037870094256621 16.52462886923273 0.09167186686028268 0.0573004669553677 82.16932498687922 -1.9147097193007787 0.566474142142205 S(ph)PSGVLSEPSQESK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSGVLSEPSQESK 14 0 Q68DA7-5;Q68DA7-3 Q68DA7-5 FMN1 Formin-1 1 S(0.999)PS(0.001)GVLSEPSQESK 162.7 4.6115e-06 207760000.0 534950.0 573990.0 528890.0 524910.0 526090.0 649900.0 589340.0 501850.0 641190.0 568020.0 True False 532069.8886385328 593094.9101657171 603353.1148057091 591363.5521797654 593084.4431202695 604973.9427000425 560831.3727025706 539300.5953426645 483177.3160058126 531768.4772936114 1.0005668093499176 1.115325438589781 1.134616173332465 1.1120695893623818 1.1153057551262162 1.1376641687732298 1.0546532873796362 1.014164280830235 0.9086234642280806 1.0 19.02043873264012 1.6923950978170217 2.1729080869963937 0.9564363625008759 1.1045422554645001 0.6406073038565228 0.043479585605625364 0.16338836496455306 1.6438095389299388 0.029345716466942628 0.011913951125324628 49.24873705271865 -1.6923950978170217 0.1481058929636242 S(ph)PSHSGEPFGLPGLEPEPGGPQAGEPPPPLAGDKPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSHSGEPFGLPGLEPEPGGPQAGEPPPPLAGDKPHK 37 1 A0A087WVT1;Q96MX3 A0A087WVT1 ZNF48 Zinc finger protein 48 1 S(0.484)PS(0.484)HS(0.031)GEPFGLPGLEPEPGGPQAGEPPPPLAGDKPHK;S(0.654)PS(0.173)HS(0.173)GEPFGLPGLEPEPGGPQAGEPPPPLAGDKPHK 100.89 4.6721e-05 428300000.0 156324.0 135876.0 141890.0 111528.0 113202.0 186531.0 175528.0 150669.0 219890.0 160563.0 True False 155482.36895322904 140398.55052122354 161866.87867001106 125647.43336477639 127617.60369917827 173636.55101674376 167037.04005792376 161912.6858616796 165701.0558750421 150315.73187509988 1.0343718984944452 0.9340243284574052 1.0768458939780783 0.8358901080904769 0.8489969885867841 1.1551455649434057 1.1112412385199835 1.0771506338153338 1.1023533851581562 1.0 17.197636482430042 2.729756202740408 24.996732975559432 1.0943006065663152 0.9465082199557361 0.46056644168921346 0.07736231038937127 582.9062744782717 1654934.5953650274 0.025208305261061242 0.02410254886908959 536.7304106889144 -2.729756202740408 -0.14779238661057914 S(ph)PSHTRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSHTRPR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 S(0.491)PS(0.41)HT(0.098)RPR 50.284 0.094804 2208600000.0 270110.0 200210.0 249220.0 181190.0 223770.0 162500.0 211310.0 162990.0 237310.0 219590.0 True False 268655.7577720419 206873.86882049934 284308.0097409268 204128.63542217054 252265.78311129802 151266.75748385425 201088.12801740944 175153.14144645003 178828.13029108307 205575.57819954233 1.306846660118697 1.0063153932598785 1.3829853343034875 0.9929615045228412 1.2271194142839075 0.7358206592858364 0.9781712875554842 0.8520133713375102 0.8698899541340616 1.0 17.64930936103509 2.750313656384063 24.99439072254748 0.8836097858376148 1.1739415195538558 0.5617699385889406 0.1305986403366577 526.3960166544204 1119450.1243370306 0.03643267726830085 0.03838196908968833 562.7476063260465 -2.750313656384063 0.290331733716241 S(ph)PSIDSIQKDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSIDSIQKDPR 12 1 A0A0D9SF60;Q99569-2;Q99569;B4DRK2;E9PHB5;E7EPC8;Q9UQB3-2;Q9UQB3 A0A0D9SF60;E7EPC8 PKP4;CTNND2 Plakophilin-4;Catenin delta-2 1 S(0.541)PS(0.458)IDS(0.001)IQKDPR 52.265 0.090764 127580000.0 495650.0 580200.0 558750.0 497670.0 538230.0 738410.0 625870.0 565510.0 869870.0 612700.0 True False 492981.4754718915 599511.6062616939 637417.1432579368 560674.9709727447 606770.4001608524 687365.4547301709 595594.2770444191 607711.2278015941 655502.1941608205 573596.9614411389 0.8594562185847284 1.0451791877618137 1.1112631100005348 0.9774720032757354 1.0578340558784805 1.1983422175096488 1.038349777076944 1.059474280119519 1.1427923057923772 1.0 19.129677855998576 4.728483443850535 3.7540093283129714 1.0735367391995634 0.8392799095198747 0.5152720155939192 0.06177852697162902 0.19372418529992244 5.259672303150287 0.01457697641728105 0.12413647924699026 53515.97520528725 -4.728483443850535 -0.23425682967968864 S(ph)PSKPLPEVTDEYKNDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSKPLPEVTDEYKNDVK 18 2 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 SSB Lupus La protein 1 S(0.957)PS(0.043)KPLPEVTDEYKNDVK;S(0.971)PS(0.029)KPLPEVTDEYKNDVK;S(0.879)PS(0.121)KPLPEVTDEYKNDVK 151.94 2.2987000000000003e-08 1513640000.0 1834350.0 1037770.0 975370.0 921760.0 897420.0 1591120.0 1491410.0 1456360.0 3059480.0 1511180.0 True False 1824474.063415445 1072311.5471047882 1112693.6179319813 1038454.7214898188 1011701.1175749257 1481129.619493602 1419264.8005605259 1565040.9784462343 2305512.1489316183 1414735.19861371 1.2896223019001969 0.757959191342337 0.7865030989702545 0.7340276275782167 0.7151169480806621 1.0469306347540879 1.0032017312860062 1.1062430481547416 1.6296421769888634 1.0 20.43210061291322 1.8111647625149008 1.6058437469831257 1.3007489918199286 0.8596566754866077 0.3538155308971914 0.22005923140201414 0.37155086248644137 1.831316862631861 0.1558531434512575 0.06512032628698422 64.73881751040975 -1.8111647625149008 -0.4410923163333209 S(ph)PSKPPGPNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSKPPGPNR 10 1 Q92766;Q92766-2;Q92766-5;Q92766-3;C9JU34;Q92766-6;C9JPJ6;C9JE09 Q92766 RREB1 Ras-responsive element-binding protein 1 1 S(0.981)PS(0.019)KPPGPNR 57.802 0.069788 78556000.0 90750.0 96269.0 85540.0 60275.0 61361.0 121080.0 102420.0 88894.0 127380.0 119470.0 True False 90261.41208327297 99473.25546916068 97583.28847299147 67905.80881986507 69174.95963485865 112710.02459166205 97465.55331760486 95527.7216745857 95988.90580455161 111845.32231658709 0.8070200006020891 0.8893823488441807 0.8724843064672316 0.6071403561040511 0.6184877311100541 1.0077312332528967 0.8714316459451104 0.8541056496237445 0.8582290597084371 1.0 16.771145394564012 2.7284433838861237 24.981115273319265 0.9009391236542161 0.7640306209158915 0.379383160188677 0.10061137176582774 951.3350757197736 2348998.3513275837 0.03543811158150343 0.03376015250098282 535.1103904036078 -2.7284433838861237 -0.13690850273832467 S(ph)PSLDNPTPFPNLGPSENPLKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSLDNPTPFPNLGPSENPLKR 22 1 M0R0R8;M0R0X9;M0QXC8;M0QX56;M0R3C2;M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653-3;Q14653-2;Q14653;Q14653-4 M0R0R8 IRF3 Interferon regulatory factor 3 1 S(0.5)PS(0.5)LDNPTPFPNLGPSENPLKR;S(0.625)PS(0.375)LDNPTPFPNLGPSENPLKR;S(0.928)PS(0.072)LDNPTPFPNLGPSENPLKR 227.51 2.6883999999999995e-26 2717040000.0 1339810.0 1106160.0 1029500.0 929720.0 1024580.0 1211150.0 1172420.0 1162580.0 1507740.0 1367150.0 True False 1332596.6118268843 1142977.8669121584 1174444.6514255872 1047422.4566736612 1155054.1898385542 1127426.0512404332 1115705.5655206644 1249337.6230616218 1136177.6796809123 1279897.3165239973 1.0411746275443488 0.893023098146896 0.917608495824647 0.8183644446714665 0.9024584823534925 0.8808722673959092 0.8717149033101717 0.9761233240605809 0.8877100256500222 1.0 20.287596639796348 -0.8653546025534615 4.178843030263929 1.0000015873817327 0.9090932351335574 0.1802926059142701 0.0576158170916931 4960117.485519091 3561111.9601798374 63.340283354348074 0.013199790791720971 0.13634694057173097 0.8653546025534615 -0.09090835224817528 S(ph)PSLDVTVPEAELNLETPEISVGGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSLDVTVPEAELNLETPEISVGGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 S(0.492)PS(0.492)LDVT(0.016)VPEAELNLETPEISVGGK;S(0.457)PS(0.457)LDVT(0.086)VPEAELNLETPEISVGGK;S(0.484)PS(0.484)LDVT(0.032)VPEAELNLETPEISVGGK;S(0.497)PS(0.497)LDVT(0.006)VPEAELNLETPEISVGGK 166.39 9.0433e-12 174079000.0 506269.0 392291.0 259710.0 361766.0 330357.0 421510.0 216684.0 214474.0 580840.0 310830.0 True False 503543.30395577365 405348.1687900824 296274.9105602128 407565.5385072966 372426.00577065255 392372.0058278124 206202.16710673625 230479.13895690485 437699.7648572441 290992.56328504824 1.7304335831514588 1.3929846323701909 1.0181528600440215 1.4006046543122708 1.2798471602376806 1.348391867470014 0.7086166216033031 0.7920447737735961 1.5041613432178524 1.0 18.150622757986604 2.264125978800903 24.486583051007532 0.953492084232994 1.3455835586155407 0.314612659043493 0.25619380775288697 199.02318287736523 190624.2256442495 0.0902399148142135 0.07547152298668489 183.70711579891068 -2.264125978800903 0.39209147438254666 S(ph)PSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPSLSSK 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3;Q9UPU5 A9Z1X7;Q8IYB3;Q9UPU5 SRRM1;USP24 Serine/arginine repetitive matrix protein 1;Ubiquitin carboxyl-terminal hydrolase 24 1 S(0.994)PS(0.006)LSSK;S(0.995)PS(0.005)LSSK;S(0.975)PS(0.025)LSSK;S(0.981)PS(0.019)LSSK;S(0.986)PS(0.014)LSSK;S(0.994)PS(0.006)LSSK 115.86 0.0058588 14460000000.0 5720090.0 5703630.0 5371870.0 4336640.0 4338990.0 4763470.0 5909000.0 5298280.0 7621150.0 5360620.0 True False 5689293.671001744 5893471.876632856 6128182.602868928 4885658.17935428 4891534.657291367 4434182.53090225 5623159.095427921 5693664.5577207 5743019.700677956 5018500.642142317 1.1336640316883722 1.1743491327156685 1.2211182263101006 0.9735294518700452 0.9747004147444424 0.8835671940871505 1.1204858774367885 1.1345349863879197 1.1443696255514184 1.0 22.258824969506893 3.7444421937558507 24.988444918225635 1.0411114049786536 1.1761743332623344 0.39641557417749695 0.08062817001359449 589.97036930678 2506537.04439235 0.02394581092966953 0.04178604991345284 5551.90714209695 -3.7444421937558507 0.13506292828368083 S(ph)PSMAQDSGASELLPNGDLEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSMAQDSGASELLPNGDLEKR 22 1 F8WE91;Q9Y6K1;Q9Y6K1-3 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 1 S(0.553)PS(0.447)MAQDSGASELLPNGDLEKR;S(0.839)PS(0.161)MAQDSGASELLPNGDLEKR 132.53 6.3975e-06 240790000.0 136763.0 117312.0 125145.0 118871.0 122494.0 157876.0 149897.0 126072.0 187702.0 161317.0 True False 136026.68320379758 121216.65900339837 142764.32822016013 133920.0564118817 138092.88482117932 146962.40372012916 142645.9094478522 135480.13282064453 141445.35717793962 151021.61094956775 0.9007100530083898 0.8026444575795019 0.9453238336057409 0.8867608785910981 0.9143915493478224 0.9731216797124875 0.9445397155476475 0.8970910319973137 0.9365901759925866 1.0 17.204395486099102 3.831735420202826 1.079941112014422 0.9380006050494575 0.8553492573312494 0.3480145789842004 0.04160244375043387 0.7129492677177522 1.493104611016916 0.013742323394189503 0.047577781090657835 6787.899758964994 -3.831735420202826 -0.08265134771820803 S(ph)PSMPSLNQTWPELNQSSEDTAIVHPVPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSMPSLNQTWPELNQSSEDTAIVHPVPIR 30 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.828)PS(0.171)MPS(0.001)LNQTWPELNQSSEDTAIVHPVPIR;S(0.59)PS(0.409)MPS(0.001)LNQTWPELNQSSEDTAIVHPVPIR 195.96 1.8992999999999998e-25 261490000.0 88597.0 90551.0 89250.0 92759.0 91709.0 106681.0 101259.0 95502.0 123530.0 112799.0 True False 88120.00359605212 93564.9352957645 101815.62422509336 104502.27988920553 103387.59754817007 99306.39357006187 96360.71532305575 102628.84418932971 93087.68671719477 105600.0712479174 0.8344691680100547 0.8860309864384657 0.9641624576754376 0.9896042555110158 0.9790485586458262 0.9404008197771018 0.9125061582281474 0.9718633991106679 0.8815115900694112 1.0 16.688251282513693 4.431635008086637 3.1965909905191414 0.9541100481281922 0.8399799794589806 0.5681104117237759 0.0343044605496874 0.17152846283632964 3.40506162954747 0.008438246528366534 0.03377008554567431 27016.868447207155 -4.431635008086637 -0.1141300686692116 S(ph)PSMSISEPISVTLPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSMSISEPISVTLPPR 17 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.981)PS(0.019)MSISEPISVTLPPR;S(0.989)PS(0.011)MSISEPISVTLPPR;S(0.99)PS(0.01)MSISEPISVTLPPR 231.13 5.933500000000002e-16 172921000.0 71892.0 73182.0 64851.0 76014.0 63715.0 79104.0 73430.0 67057.0 81460.0 75047.0 True False 71504.94145995213 75617.81863054684 73981.4571050032 85637.364606109 71828.72758160759 73635.72667078655 69877.91037015941 72061.13384854657 61385.27450807648 70257.43620903073 1.0177562023073232 1.0762962998758998 1.0530053628044826 1.218908192882526 1.0223647695868368 1.048084454031381 0.9945980687689465 1.0256726936939382 0.8737192505209315 1.0 16.100363311133886 2.0852887519780916 1.1309000102789555 0.9565992809520533 1.0834729013656275 0.3945622933194174 0.0629238050798088 0.516625530916268 1.2315938790126706 0.0458334456849714 0.02274575863312349 121.69948824033663 -2.0852887519780916 0.1268736204135742 S(ph)PSPAHLPDDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 S(0.5)PS(0.5)PAHLPDDPK 79.771 0.007042699999999998 0.0 383500.0 319740.0 322180.0 300570.0 292080.0 421040.0 350010.0 340580.0 456690.0 392010.0 True False 381435.278610856 330382.3526130888 367540.14356123883 338622.1311818633 329274.65670620627 391934.4958215509 333078.6791319559 365995.80903019715 344144.8688324753 366991.58618335426 1.0393570124528289 0.9002450329965468 1.0014947410200585 0.9226972604562188 0.8972267188210029 1.067965889620518 0.9075921401793255 0.9972866485482323 0.9377459369341933 1.0 18.485387461999316 S(ph)PSPAVPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;E9PQ59;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 S(0.892)PS(0.108)PAVPLR;S(0.844)PS(0.156)PAVPLR;S(0.983)PS(0.017)PAVPLR 149.72 9.121e-05 2086360000.0 1007280.0 1290950.0 1136370.0 1207710.0 1123310.0 1179100.0 1133870.0 1097330.0 1368640.0 1193240.0 True False 1001856.9163993299 1333918.4903542446 1296361.0184948943 1360605.9621707052 1266356.8701199973 1097591.5923028481 1079020.3762959652 1179218.3367288364 1031357.0108364082 1117086.4016158383 0.8968481891375352 1.1941050293198125 1.1604841099307446 1.2179952778966978 1.133624819251441 0.98254852150667 0.9659238307217674 1.0556196324860152 0.9232562578369725 1.0 20.091309345442596 2.7408781542329232 23.9960513293631 0.9927766366700188 1.1323198257962381 0.36714719470761137 0.08778365867632593 126.2677378297377 1307393.107231204 0.027010137607170023 0.027407128949521933 550.6531833382227 -2.7408781542329232 0.13954318912621932 S(ph)PSPFTHTHLAQGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPFTHTHLAQGYR 15 0 P38398-7;P38398;P38398-4;P38398-8;Q5YLB2 P38398-7 BRCA1 Breast cancer type 1 susceptibility protein 1 S(0.827)PS(0.17)PFT(0.003)HTHLAQGYR;S(0.609)PS(0.39)PFT(0.001)HTHLAQGYR 86.005 0.003685 138260000.0 113386.0 112607.0 107191.0 97630.0 84787.0 120689.0 118820.0 82139.0 142157.0 100017.0 True False 112775.54237436892 116355.05592263104 122282.56107912591 109989.94798977046 95584.12187807835 112346.05350134699 113072.22266352086 88268.62927339063 107124.31215620691 93633.82943113829 1.2044315933623984 1.24266044259359 1.3059656090329717 1.1746817219588466 1.0208289296591717 1.1998446948489951 1.2076001093886508 0.9427001951074379 1.1440770158288784 1.0 16.514742241995705 2.749588989589161 0.3975860647659343 1.0039519615902541 1.2826881822400351 0.4165640784556406 0.08510847651021515 1.4252093648150397 0.45433785787223085 0.09142379184468169 0.15407716968788165 561.8093847330118 -2.749588989589161 0.278736220649781 S(ph)PSPGPNHTSNSSNASNATVVPQNSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.755)PS(0.245)PGPNHTSNSSNASNATVVPQNSSAR 121.83 3.0779e-05 332840000.0 9084.9 20739.0 26986.0 27291.0 26180.0 27336.0 24692.0 21258.0 14424.0 24525.0 True False 9035.987907827284 21429.285078009754 30785.394233483108 30746.037801790728 29513.867818982773 25446.326662022402 23497.553627399946 22844.37990593675 10869.398471697703 22959.793503091147 0.393557019866522 0.9333396258605141 1.3408393341751257 1.3391251884583062 1.2854587657771936 1.108299456552015 1.0234218188520032 0.9949732301756607 0.4734101145219064 1.0 14.486822046240487 1.4254839459509094 5.859269187794277 0.7294006706054318 1.080476644083932 0.16314102208607095 0.2854004404850145 0.32595317390154466 20.419670226468973 0.19442541575593633 0.07389793112292456 26.636916294173968 -1.4254839459509094 0.35107597347850017 S(ph)PSPKPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPKPTK 8 1 Q15287;H3BTC0;H3BMM9;Q15287-2;Q15287-3;H3BMS0;H3BUL0;H3BV80 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 1 S(0.997)PS(0.003)PKPTK;S(0.987)PS(0.013)PKPTK 81.017 0.014505 287220000.0 464170.0 485100.0 400380.0 357972.0 441380.0 408860.0 547390.0 482740.0 718500.0 533680.0 True False 461670.9602941355 501246.26025085774 456750.0238346535 403291.21849630424 497587.1267357756 380596.4705529151 520910.6544671326 518764.51010405086 541435.3024067383 499620.0854935647 0.9240440360560364 1.003254822623247 0.9141946793100587 0.8071957677560159 0.9959309907331272 0.7617717573882793 1.0426135169336423 1.0383179643219782 1.0836940269762476 1.0 18.93047195110143 2.0814366156566453 24.999998342128105 1.0438207704101454 0.9060044578813458 0.47415575571088964 0.07214122946012012 24.360566669141743 7476.303152403176 0.026097412343720264 0.019274217987221988 120.6248026050471 -2.0814366156566453 -0.13781631252879967 S(ph)PSPLVSLQAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPLVSLQAVK 12 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 S(0.844)PS(0.156)PLVSLQAVK 192.65 4.0056e-06 167150000.0 289450.0 277080.0 261220.0 228360.0 233490.0 260850.0 320680.0 245630.0 379060.0 301790.0 True False 287891.63336091844 286302.4403016033 297997.50543505716 257270.35258572188 263223.5674963444 242818.05347485145 305167.4832834361 263960.157883867 285645.74214376905 282529.5038245816 1.0189790073735665 1.0133541326691466 1.054748270184481 0.9105964124209032 0.9316675389051615 0.8594431738556182 1.0801260723301664 0.9342746662230219 1.0110297801716392 1.0 18.10804200673935 3.7495883726774135 24.753579241592327 0.9587845921806002 1.0274598366105638 0.2229970666165232 0.05804693871912762 956.0727842849519 2146053.5099653667 0.014742442180186681 0.02625572424809025 5618.085866879582 -3.7495883726774135 0.06867524442996364 S(ph)PSPS(ph)PTPEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPSPTPEAK 11 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 S(0.994)PS(0.32)PS(0.685)PT(0.001)PEAK 150.89 4.9229e-05 260000000.0 458270.0 390700.0 307400.0 305440.0 308770.0 450810.0 423370.0 410530.0 558270.0 392440.0 True False 455802.72523858404 403704.21331686224 350679.2480313019 344108.6726825315 348090.0292768266 419646.5657925932 402889.9756695415 441165.8332291002 420691.8389347384 367394.1432152126 1.240636884544954 1.0988313797925184 0.9545041871445418 0.9366199190632146 0.9474566639265176 1.1422244299272133 1.0966151287652295 1.200797131299596 1.145069530104907 1.0 18.486969102460062 2.7074658179120323 24.138534152667674 1.1333908130394348 1.0291167992831476 0.1370314209758795 0.09710590359010829 743.9841534946789 577545.2330575972 0.03320740815571413 0.031312044604732255 509.87746498515054 -2.7074658179120323 -0.1042740137562872 S(ph)PSPSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 S(0.993)PS(0.007)PSFR;S(0.534)PS(0.465)PS(0.001)FR 114.99 0.0060646 1404140000.0 902370.0 1104640.0 1127180.0 1035010.0 1052420.0 1160160.0 994980.0 960900.0 1187820.0 952890.0 True False 897511.7401827308 1141407.2746310201 1285877.1463758051 1166042.1598780344 1186439.448817947 1079960.869922883 946849.0162072893 1032607.2373513328 895097.6769725421 892075.7443898278 1.006093648243537 1.2794959192750308 1.441443907047752 1.30711115867812 1.3299761329453716 1.2106156643251937 1.0613997994698599 1.1575331398093638 1.0033875291439307 1.0 19.766806686170106 2.3858297379083595 3.446908796147207 1.0773086482385683 1.2841388237760367 0.45468767187502157 0.11107394499582832 0.23743949827509245 5.599509560068411 0.04211768391626358 0.03451359743092322 243.12506675167222 -2.3858297379083595 0.2068301755374684 S(ph)PSPVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 S(0.503)PS(0.497)PVLR 98.629 0.021327 0.0 255930.0 272520.0 250160.0 258460.0 227730.0 297520.0 258410.0 256990.0 277640.0 237450.0 True False 254552.10131649583 281590.66345818155 285380.3535703004 291181.00949949934 256730.06563853912 276953.1426867471 245909.72107793708 276167.898768778 209219.34218539592 222295.7377088275 1.1451056324342084 1.266738923384222 1.283786889086033 1.3098812082528577 1.154903230645003 1.2458769814539232 1.1062277829188079 1.2423445524201393 0.9411756803877201 1.0 17.762120760879586 1.2395819581138134 24.99997000046256 0.9705877451330318 1.2202700568658214 0.712125777807491 0.06326549681865734 13.412388741040438 328376.80269768165 0.04826099926144016 0.015329286168011637 17.361288664396543 -1.2395819581138134 0.24968231173278954 S(ph)PSPVQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPVQGK 8 0 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 S(0.609)PS(0.391)PVQGK 87.895 0.015734 1991200000.0 1747300.0 1602800.0 1528800.0 1439300.0 1349200.0 1396000.0 1641800.0 1648400.0 2096600.0 1675600.0 True False 1737892.7309432805 1656148.229086939 1744041.7514321841 1621515.2324252452 1521012.6226650714 1299497.8058305262 1562379.8617149373 1771411.9784055972 1579921.0230006522 1568661.7734466658 1.1078823748759938 1.055771395160633 1.1118022896676911 1.0336933428692214 0.9696243310137534 0.8284117250943572 0.9959953688946432 1.1292504275879995 1.0071776145403528 1.0 20.58110288888777 3.5219757243019183 4.665883770592833 0.9972204705965545 1.0872530993292648 0.29971793679707925 0.06990462069467131 0.34563157446100135 16.859092040940734 0.02237228271775034 0.03418211687278527 3326.4095918903263 -3.5219757243019183 0.09003262873271034 S(ph)PSPYYSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 S(0.997)PS(0.003)PYYSR;S(1)PSPYYSR;S(0.998)PS(0.002)PYYSR;S(0.917)PS(0.083)PYYSR;S(0.999)PS(0.001)PYYSR;S(0.998)PS(0.002)PYYSR 134.23 0.00092897 5370670000.0 1153920.0 1510900.0 1453098.0 1380235.0 1481659.0 1351159.0 1605901.0 1296830.0 1579741.0 1495553.0 True False 1147707.4229325643 1561189.3931416615 1657681.5678457655 1554972.6094813184 1670339.4911690683 1257756.5586161658 1528217.433492433 1393606.039769307 1190434.9979948832 1400105.5271326595 0.8197292280411228 1.1150512321302617 1.183969019278574 1.1106110070616022 1.1930097116249754 0.8983298288893862 1.0915016074696455 0.9953578589346311 0.8502466242189829 1.0 20.417104137732604 2.732779952927647 24.871085514285905 0.9795530497992027 1.0931523247622312 0.2035469812085935 0.11414090113306422 767.5014814874617 3302138.1710275384 0.03663103742528976 0.03538026139204396 540.4804045087518 -2.732779952927647 0.11359927496302857 S(ph)PSQDFSFIEDTEILDSAMYR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPSQDFSFIEDTEILDSAMYR 21 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 S(0.431)PS(0.431)QDFS(0.139)FIEDTEILDSAMYR;S(0.472)PS(0.472)QDFS(0.055)FIEDTEILDSAMYR;S(0.47)PS(0.47)QDFS(0.06)FIEDTEILDSAMYR;S(0.365)PS(0.365)QDFS(0.269)FIEDTEILDSAMYR;S(0.497)PS(0.497)QDFS(0.007)FIEDTEILDSAMYR;S(0.484)PS(0.484)QDFS(0.032)FIEDTEILDSAMYR 228.63 4.176e-25 269592000.0 111147.5 122085.0 113376.0 114802.0 120031.0 121200.9 109990.0 102097.3 130524.0 113139.0 True False 110549.09420964828 126148.52542305914 129338.35531814216 129335.92142908591 135316.23637052407 112822.56705922993 104669.36349739674 109716.31896558448 98358.10913199329 105918.37215682876 1.0437197245248728 1.1909975847842191 1.2211135111351263 1.2210905322221512 1.2775520772748203 1.0651841107619973 0.9882078185871035 1.0358572996489435 0.9286217974192305 1.0 16.692593329306767 2.528856080475616 4.742466593720587 0.9982332219927583 1.1938158976050688 0.709309187021252 0.061336624532203794 0.11931163352067724 5.797624441168653 0.021038059813252942 0.019241611166080842 337.95282449115865 -2.528856080475616 0.19558267561231046 S(ph)PSQDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSQDVK 7 0 Q9UHK0 Q9UHK0 NUFIP1 Nuclear fragile X mental retardation-interacting protein 1 1 S(0.981)PS(0.019)QDVK 72.275 0.060936 0.0 505740.0 464430.0 343090.0 297350.0 340560.0 302310.0 403670.0 397960.0 565830.0 451710.0 True False 503017.15203299664 479888.2717961364 391394.08980826056 334994.4795120172 383928.297342734 281412.02126119356 384142.93993084884 427657.795999934 426388.77823354886 422881.48107161286 1.1894991257557888 1.1348055974928581 0.9255408603290904 0.7921710798569768 0.9078862861760496 0.6654630998455519 0.9083938576771021 1.011294689273736 1.0082938064656988 1.0 18.689893857335708 4.254293812528347 3.8281099848506646 0.8952023792196413 1.1759996693020207 0.5198496945310056 0.10064282912042671 0.17202454186421498 5.40963795650812 0.027249372566526448 0.07707722290046573 17959.48225817018 -4.254293812528347 0.2807972900823794 S(ph)PSSDLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 S(0.333)PS(0.333)S(0.333)DLDTDAEGDDFELLDQSELSQLDPASSR;S(0.333)PS(0.333)S(0.333)DLDTDAEGDDFELLDQSELSQLDPASSR 248.2 1.8823999999999998e-47 320920000.0 115493.0 125992.0 117868.0 115666.0 128234.0 156934.0 148474.0 139332.0 174981.0 148233.0 True False 114871.19852047869 130185.56755622778 134462.78987297814 130309.30374049796 144563.83979753393 146085.52196289971 141291.74539424008 149729.66135356016 131859.27717527267 138772.64303134382 0.827765444335692 0.9381212659243182 0.9689430635302361 0.9390129127328483 1.0417315447748738 1.0526968339855296 1.0181527303067024 1.0789566162528268 0.9501820697144922 1.0 17.082363664449524 5.7980384652892285 0.5658726006647202 1.0314286861507422 0.2798876201423656 0.6776817149929599 0.03947257745745292 6.182749029279729 0.6058026114078777 0.01844696380536262 3.9777935146226704 628113.988155422 -5.7980384652892285 -0.7515410660083766 S(ph)PSSDSWTCADTSTER ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSSDSWTCADTSTER 16 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 S(0.981)PS(0.019)SDSWTCADTSTER;S(0.895)PS(0.092)S(0.013)DSWTCADTSTER 174.21 4.1434e-09 712220000.0 291300.0 289360.0 304160.0 308730.0 290010.0 324810.0 295290.0 204746.0 320170.0 283760.0 True False 289731.6731664729 298991.1726781865 346983.08419388684 347815.1863452002 326941.0544760579 302356.6492204968 281005.6945826557 220025.18619912144 241268.39355819838 265650.1938608417 1.090651088770694 1.1255070750477607 1.3061653716528083 1.3092976944236672 1.2307201802657928 1.1381759027771818 1.0578034613814655 0.8282515551800408 0.9082183982315651 1.0 18.019168240069074 2.1089340096516347 2.2701592753306024 0.8971189387768885 1.213923466166475 0.7300331105027669 0.07845504265461492 0.1535633107950233 1.5486218501184394 0.041928334351142196 0.0251874766511911 128.5091377538628 -2.1089340096516347 0.31680452738958653 S(ph)PSSESSPQHPTPPARPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-2;O14733-3 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 S(0.244)PS(0.132)S(0.177)ES(0.223)S(0.223)PQHPTPPARPR 105.77 0.00028363 303480000.0 31087.0 44248.0 37391.0 35721.0 42157.0 48600.0 44501.0 34041.0 51959.0 43926.0 True False 30919.63104609039 45720.767931519185 42655.327791601834 40243.27493744337 47525.44406588455 45240.396392094284 42348.31661967131 36581.31227669552 39154.40066492932 41122.60507305935 0.7518889183007224 1.1118159428443464 1.0372720238861184 0.97861686695058 1.1557012008711456 1.1001344956555932 1.0298062718651781 0.8895669963443302 0.9521381389959788 1.0 15.327644040164373 1.7594787739192455 24.99999999990912 0.9374360061884817 1.0338172747848495 0.08944732449954951 0.10691960170216423 19.131374177043984 22884.17162811756 0.04804304499346854 0.026643080764545045 57.474972734823425 -1.7594787739192455 0.09638126859636786 S(ph)PSSGSGGGGPKPYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSSGSGGGGPKPYK 15 1 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 S(0.851)PS(0.143)S(0.005)GS(0.001)GGGGPKPYK;S(0.972)PS(0.023)S(0.004)GSGGGGPKPYK 148.36 2.1476e-06 1467670000.0 796800.0 882850.0 937570.0 718650.0 707740.0 1074910.0 1094940.0 1000580.0 1450250.0 1044950.0 True False 792510.117332802 912235.128555904 1069571.7064954701 809631.0163151557 797866.493896366 1000604.0017659686 1041973.5691230074 1075248.3604422903 1092855.3198543794 978260.3963732952 0.8101218451353799 0.9325074713622603 1.093340495496591 0.8276232170051049 0.8155972549377409 1.022840141004898 1.0651290525364372 1.0991433001157551 1.1171415339984343 1.0 19.899859011754547 2.530994544693512 5.066333624509458 1.0770418726071387 0.9051392069497765 0.5057225802051882 0.08218903243427744 0.18424010727594167 10.254889204185119 0.02866188386534428 0.026350734298106263 339.6210064797535 -2.530994544693512 -0.17190266565736223 S(ph)PSSKPSLAVAVDSAPEVAVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSSKPSLAVAVDSAPEVAVK 21 1 O60508;Q5SRN1 O60508 CDC40 Pre-mRNA-processing factor 17 1 S(0.787)PS(0.095)S(0.095)KPS(0.024)LAVAVDSAPEVAVK;S(0.896)PS(0.101)S(0.004)KPSLAVAVDSAPEVAVK;S(0.939)PS(0.052)S(0.004)KPS(0.005)LAVAVDSAPEVAVK;S(0.975)PS(0.025)SKPSLAVAVDSAPEVAVK 264.85 4.5231999999999985e-37 3555610000.0 6035200.0 4597020.0 4090630.0 3321680.0 3706610.0 5905000.0 5359100.0 5152960.0 7155700.0 5762500.0 True False 6002707.153773756 4750029.031742727 4666555.147606648 3742204.3474204754 4178624.8127012877 5496801.248874834 5099859.859249917 5537500.041400693 5392273.6164675 5394732.316475539 1.1126978692606229 0.8804939250157261 0.8650207042442061 0.6936774853483954 0.7745750053139332 1.018920110658239 0.945340669392422 1.0264642834064521 0.9995442405917844 1.0 22.363119945112672 2.722334290822426 24.616200922632302 0.9974988768835882 0.856588169528101 0.29673503129516365 0.10174950216646293 866.4809646359266 1314495.6696687874 0.03472015864357787 0.03282662827825942 527.6358439087481 -2.722334290822426 -0.14091070735548716 S(ph)PSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK 35 2 O60508;Q5SRN1 O60508 CDC40 Pre-mRNA-processing factor 17 1 S(0.675)PS(0.099)S(0.099)KPS(0.126)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.794)PS(0.164)S(0.04)KPS(0.001)LAVAVDSAPEVAVKEDLETGVHLDPAVK 190.83 6.152100000000001e-21 433860000.0 323000.0 260288.0 221759.0 211793.0 214702.0 327590.0 356790.0 290920.0 558480.0 360730.0 True False 321261.0038886739 268951.52873258165 252980.73963621835 238605.97208437446 242043.02706154474 304944.47436391277 339530.7046298401 312629.9276618273 420850.0872485952 337707.9025635089 0.9512984488962558 0.796402828275548 0.7491111037552435 0.7065454206820124 0.7167230178039037 0.9029829389514074 1.0053975700671927 0.9257406335140012 1.24619555554952 1.0 18.36541641408954 2.1522794327379726 1.3348808368912193 1.0686295770352623 0.7801254132585337 0.6003531689352907 0.09971124537267369 0.31477324789973443 1.0697453629949727 0.06586756800739652 0.035182507452724665 141.99708621529564 -2.1522794327379726 -0.2885041637767286 S(ph)PSSVTGNALWK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSSVTGNALWK 12 0 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 S(0.742)PS(0.205)S(0.045)VT(0.009)GNALWK;S(0.906)PS(0.061)S(0.033)VTGNALWK;S(0.997)PS(0.003)SVTGNALWK;S(0.972)PS(0.028)SVTGNALWK 261.41 2.4302e-21 2008790000.0 1002510.0 1034460.0 919460.0 907980.0 957650.0 1123370.0 1149620.0 1052990.0 1338620.0 1230240.0 True False 997112.5975493322 1068891.3757557254 1048911.9759104114 1022930.1749027139 1079601.0510637457 1045714.0760285371 1094008.4886251206 1131569.4607748762 1008735.0375890161 1151725.0299385455 0.8657557764482524 0.9280786194364118 0.9107312497726823 0.8881722184654578 0.9373774321127255 0.9079546322652509 0.9498868741990398 0.9824996690705378 0.8758471087867569 1.0 20.13536488914662 4.288354684701432 0.01397066690793946 1.804833496175353 8.656830141060903e-08 0.4170290753944784 0.03192977906700797 2503.0071034261546 6.30523679324833 372.4573006840219 443.9724993888278 19424.716304392092 -4.288354684701432 -1.8048334096070515 S(ph)PSTLLPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSTLLPK 8 0 E7EVA0;P27816-4;H0Y2V1;F8W9U4;H7C4C5;B5MEG9;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 S(0.697)PS(0.303)TLLPK;S(0.535)PS(0.465)TLLPK;S(0.618)PS(0.382)TLLPK;S(0.711)PS(0.282)T(0.007)LLPK 128.58 0.0011827 4717610000.0 1896220.0 1830120.0 1625470.0 1527460.0 1585520.0 2056100.0 1961870.0 1893910.0 2881210.0 2030090.0 True False 1886010.9622098452 1891034.4378690976 1854322.0471614816 1720836.2793859977 1787426.573886691 1913966.6465387866 1866966.8530287987 2035243.1812801172 2171174.401736004 1900527.9181525097 0.9923616192090583 0.9950048193490151 0.975687875695115 0.9054517236762357 0.9404895117900904 1.007071050237105 0.982341188044038 1.0708830750871385 1.1424059499460486 1.0 20.85796878741242 1.7556390755759792 3.165027032023477 1.0827127964281054 0.9682372779471469 0.5362424120485996 0.04242306538320311 0.16298051198051142 3.3277226819485413 0.02416696636222222 0.01163491972114318 56.96906288577646 -1.7556390755759792 -0.1144755184809585 S(ph)PSVAAMASPQLCR ddPTM_BT-474_Trastuzumab_2h_R1 7 SPSVAAMASPQLCR 14 0 P25325-2 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase 1 S(1)PSVAAMASPQLCR;S(0.987)PS(0.013)VAAMASPQLCR;S(1)PSVAAMASPQLCR;S(1)PSVAAMASPQLCR;S(1)PSVAAMASPQLCR;S(1)PSVAAMASPQLCR;S(0.845)PS(0.155)VAAMASPQLCR 336.95 1.2195999999999996e-68 4823060000.0 730391.0 705393.0 732721.0 656598.0 623454.0 772595.0 755623.0 731078.0 947638.0 775561.0 True False 726458.6560100687 728871.5795859277 835881.7478748965 739723.2394774898 702847.1713986286 719187.3261430049 719070.6287298247 785634.7526988625 714105.3125986321 726064.0329888223 1.0005435099430857 1.003866803022246 1.1512507298206367 1.0188126747339898 0.9680236721069598 0.9905287873612061 0.9903680612986578 1.0820460964920944 0.9835293860502048 1.0 19.469737262329627 3.498697837127751 24.983235410537542 1.0088133447313414 1.0534094397974327 0.1664919257086387 0.04820844105111517 1553.2971489930176 1798538.8061813193 0.013537071198569377 0.020757440461749647 3152.810274298562 -3.498697837127751 0.0445960950660913 S(ph)PSVPNNQDHAHHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSVPNNQDHAHHVK 15 0 Q7Z2Y5;Q7Z2Y5-2 Q7Z2Y5 NRK Nik-related protein kinase 1 S(0.958)PS(0.042)VPNNQDHAHHVK 107.34 0.0019478 332440000.0 449930.0 433720.0 398300.0 357060.0 420070.0 493750.0 469580.0 297160.0 549570.0 400210.0 True False 447507.62687192234 448156.1080107232 454377.17791433784 402263.7593898131 473563.4245500422 459618.224662481 446864.62143019855 319335.5881479055 414135.83736071194 374668.25516298093 1.1944103102016375 1.196141124408245 1.2127453331125784 1.0736531687607964 1.263953959334083 1.2267338327410384 1.192694110782917 0.8523155718356611 1.1053400752635492 1.0 18.515254220827952 1.7608354978620293 24.999999999990003 0.974778444785159 1.1943933275255978 0.6295045921171931 0.07313353488982041 6.423542194575037 7215.118132535566 0.031921715938202914 0.017702628525666734 57.65480370632105 -1.7608354978620293 0.21961488274043883 S(ph)PSWQRPNQGVPSTGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSWQRPNQGVPSTGR 16 1 Q96HC4;Q96HC4-4;Q96HC4-7;H0Y8Y3;A0A0A0MSP3;Q96HC4-6 Q96HC4;Q96HC4-6 PDLIM5 PDZ and LIM domain protein 5 1 S(0.997)PS(0.003)WQRPNQGVPSTGR;S(0.839)PS(0.161)WQRPNQGVPSTGR;S(0.961)PS(0.039)WQRPNQGVPSTGR;S(0.957)PS(0.043)WQRPNQGVPSTGR 176.3 1.9481e-09 3322520000.0 230977.0 224590.0 236970.0 228297.0 200378.0 207815.0 254230.0 212842.0 262979.0 196828.0 True False 229733.445495957 232065.34238247803 270333.31621983566 257199.3767921812 225894.95056654446 193449.23819389057 241931.92364708747 228725.35082977684 198171.34918806082 184266.26852707143 1.2467471520008873 1.259402191391227 1.4670797774369633 1.3958028175644899 1.225915911643683 1.0498353265642324 1.312947429722028 1.2412762935836719 1.0754618887772536 1.0 17.491432472249496 3.0747101027605557 5.505581952311549 1.1695804469346192 1.3438646356511927 0.44148699004560854 0.10596457707156824 0.22493333491899434 12.05507243396451 0.03198871226684814 0.03835473417531589 1187.70915139969 -3.0747101027605557 0.17428418871657358 S(ph)PSYGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSYGR 6 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR 172.03 0.0055052 18665100000.0 1443420.0 1714130.0 1622240.0 1506130.0 1671840.0 1138350.0 1736650.0 1349950.0 1651070.0 1512910.0 True False 1435648.7870990394 1771183.7808365321 1850637.291237147 1696805.9035730103 1884738.9142279653 1059658.543887665 1652641.6048527483 1450690.1239072015 1244185.921704514 1416354.7885325835 1.013622292043398 1.2505226763638577 1.3066198569883063 1.198009084525346 1.3306968914057558 0.7481589729262157 1.1668274208081508 1.024242044191619 0.8784422743354825 1.0 20.433751266625915 2.7604986473982027 24.998735449250404 0.9868809881119949 1.2251980013898067 0.49212702574141987 0.12907373221402918 724.819733939166 825942.2528748938 0.038471081171999565 0.04077558874725784 576.1010243015203 -2.7604986473982027 0.23831701327781185 S(ph)PSYTNDSTATFIIDGMHCK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSYTNDSTATFIIDGMHCK 20 0 Q04656-5;Q04656;Q04656-2;Q04656-3 Q04656-5 ATP7A Copper-transporting ATPase 1 1 S(0.819)PS(0.178)Y(0.003)TNDSTATFIIDGMHCK;S(0.978)PS(0.019)Y(0.002)TNDSTATFIIDGMHCK 208.53 3.6013e-22 914770000.0 655450.0 717770.0 721570.0 643850.0 761180.0 872780.0 765220.0 628030.0 886890.0 767440.0 True False 651921.1300273403 741660.5405488731 823160.7840011274 725361.3439845728 858111.7611326699 812446.7729031286 728203.3851757238 674896.7876717224 668327.8432171355 718461.3221615596 0.9073851436650385 1.0322901423802697 1.1457273462189577 1.009603887655711 1.1943743311761843 1.1308149065823123 1.0135596206972621 0.9393641200353428 0.9302210468427268 1.0 19.45455096678029 1.9872235098965896 4.790528345460697 0.9543992972656833 1.074884587174776 0.30246324503083266 0.07716822204499288 0.23004525944913715 14.163356396519216 0.03418669183457291 0.021907773210702374 97.10095692889666 -1.9872235098965896 0.1204852899090928 S(ph)PT(ph)PDGSER ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTPDGSER 9 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 2 S(1)PT(1)PDGSER 106.0 0.015949 60921000.0 134890.0 121370.0 108760.0 107060.0 117250.0 112590.0 117460.0 104050.0 145430.0 133220.0 True False 134163.767227688 125409.72708028555 124072.46264113324 120613.78502289102 132181.09250480265 104806.91830835176 111778.01105922561 111814.73935519418 109590.72516216007 124717.78554461981 1.0757388502515444 1.0055480582231648 0.994825734752517 0.9670937027641457 1.0598415609096326 0.8403526237310827 0.8962475606114352 0.8965420518566748 0.8787096778827284 1.0 16.92830769170832 2.7417028624958215 24.999692365241824 0.8956267891306221 1.015367290739776 0.6036635339831438 0.04765271997092507 181.06377164313824 1440547.1312214185 0.014051949214268557 0.014322671920346922 551.6998457025502 -2.7417028624958215 0.11974050160915384 S(ph)PTAALNESLVECPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTAALNESLVECPK 15 0 Q53EZ4 Q53EZ4 CEP55 Centrosomal protein of 55 kDa 1 S(0.886)PT(0.114)AALNESLVECPK;S(0.888)PT(0.112)AALNESLVECPK 170.47 4.4515e-09 158710000.0 217530.0 209090.0 189538.0 200995.0 166788.0 249000.0 232460.0 207470.0 255450.0 224570.0 True False 216358.8426498548 216049.43425242585 216223.30290617043 226440.94639151855 188027.46317007282 231787.21608295199 221215.02171656385 222952.4649113131 192497.77035462944 210237.75033595032 1.0291150961429298 1.0276433890069159 1.028470398682708 1.0770708211521303 0.894356331675037 1.1025004582315336 1.0522136075137427 1.0604777902876397 0.9156194358388386 1.0 17.681662217631054 1.2461417693006125 24.999368561176922 0.9578097099088173 1.0348319450370282 0.2318286925671491 0.0554447994267764 212.02792906420822 699193.1649092294 0.03695107126693315 0.012912188868608567 17.625513124984046 -1.2461417693006125 0.07702223512821094 S(ph)PTATFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTATFEK 8 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 S(0.993)PT(0.007)ATFEK 66.758 0.063835 108230000.0 225590.0 233340.0 211730.0 211350.0 175080.0 245020.0 233390.0 226990.0 315490.0 214770.0 True False 224375.448505405 241106.58084299118 241539.7436098488 238106.88832979626 197375.4002195382 228082.34411504 222100.0340636186 243929.1464318652 237741.71684941117 201063.1947261521 1.115944908818365 1.1991582107873007 1.2013125720936928 1.1842390580439033 0.9816585302365424 1.134381379076802 1.104627997014166 1.2131964120240728 1.1824228555266674 1.0 17.617289490213764 -2.2790100358373717 2.3755695794023657 0.31734424295725455 1.1483752377623802 0.3091219767094938 0.06556244909409448 5300574.974146751 1620729.6753857394 19154589.053208858 0.017098832096190668 0.005260051111297811 2.2790100358373717 0.8310309948051255 S(ph)PTDDKVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTDDKVK 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 S(0.999)PT(0.001)DDKVK 112.71 0.0018099 417390000.0 944470.0 653560.0 549090.0 486950.0 532670.0 586160.0 714860.0 755580.0 1372900.0 796210.0 True False 939385.0784604818 675313.3495146374 626397.0992241624 548597.8200718921 600502.3671175533 545640.1388722219 680279.4907696063 811965.2163574987 1034567.1909174831 745395.1961303244 1.2602510498286608 0.9059802813601258 0.8403556965165141 0.7359825001823269 0.8056160949722057 0.7320145631537215 0.9126427085943638 1.089308356926324 1.3879445377276083 1.0 19.507645995755666 1.6401045923264692 3.313936387795964 1.2040955734978878 0.8677799511528675 0.3709774142061161 0.16571769295309594 0.1922635997883862 4.993040116958759 0.10212015876327317 0.044238335341689666 43.66209722005688 -1.6401045923264692 -0.3363156223450202 S(ph)PTEDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPTEDFR 7 0 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 S(0.985)PT(0.015)EDFR;S(0.992)PT(0.008)EDFR;S(0.991)PT(0.009)EDFR;S(0.993)PT(0.007)EDFR 134.48 0.0033258000000000003 7631190000.0 7639960.0 8070390.0 6903750.0 7189780.0 7201700.0 8106040.0 8193300.0 7226530.0 9044180.0 7830060.0 True False 7598827.30423936 8339008.052496222 7875737.991529277 8100005.410815244 8118793.807179836 7545688.534365684 7796958.777554502 7765810.364175807 6815363.024803024 7330338.867148365 1.036627015743331 1.1376019858874884 1.074402989311336 1.104997402932655 1.1075605035894056 1.029377859757948 1.0636559808302097 1.0594067347935374 0.9297473347851276 1.0 22.80544846217907 1.363792086033889 4.615107526815852 0.9660964984872378 1.0797505619887933 0.6243500729681157 0.034811135652620374 0.128685367385448 4.075605378843733 0.024870714005497483 0.008615503399784058 23.109581781157438 -1.363792086033889 0.11365406350155549 S(ph)PTESVNTPVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTESVNTPVGK 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 S(0.981)PT(0.019)ESVNTPVGK 103.85 0.002309 148660000.0 122830.0 105900.0 108460.0 96635.0 100430.0 132290.0 111210.0 110420.0 139700.0 122760.0 True False 122168.69692769588 109424.81748209821 123730.22524877994 108868.98109179035 113219.16520475328 123145.10367716372 105830.34743654399 118660.10110139873 105272.80688409372 114925.35169987632 1.063026522178808 0.9521381998278102 1.076613849065237 0.9473017004646461 0.9851539588969135 1.0715225305444616 0.9208616364552564 1.0324971761781123 0.9160103086654902 1.0 16.81033755560037 2.2326629002388008 24.999605480696793 0.9749843857013776 1.0112944526824426 0.15388198608624903 0.05402669440364262 345.4271525457576 1464200.8829740016 0.018696320908261944 0.01415964246270282 170.86885146878078 -2.2326629002388008 0.03631006698106498 S(ph)PTFSEELPVLGDGQQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 S(0.938)PT(0.062)FSEELPVLGDGQQLR;S(0.923)PT(0.077)FSEELPVLGDGQQLR;S(0.991)PT(0.009)FSEELPVLGDGQQLR;S(0.854)PT(0.125)FS(0.022)EELPVLGDGQQLR 282.55 2.2750999999999995e-39 643184000.0 125977.0 130875.0 125017.0 127963.0 121837.0 132717.0 139049.0 126425.0 144282.0 137878.0 True False 125298.75382936044 135231.09525939188 142618.30693275624 144163.10267965813 137352.21976552354 123542.58617221362 132322.66865123657 135859.4754731419 108725.63437974815 129078.5079967052 0.9707174011692076 1.0476654662203233 1.104895843205723 1.1168637205144791 1.0640982910108439 0.9571119785128529 1.0251332363914074 1.052533667933393 0.8423217471844611 1.0 16.97788928152836 2.7563586978495596 22.723446624863918 0.9889075572543966 1.0656748707962787 0.2933203391749599 0.06440831656270388 369.47922448049894 471725.3142575993 0.020193371251100017 0.021358826589821356 570.6353839080447 -2.7563586978495596 0.07676731354188204 S(ph)PTGPSNSFLANMGGTVAHK ddPTM_BT-474_Trastuzumab_2h_R1 18 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 S(0.84)PT(0.16)GPSNSFLANMGGTVAHK;S(0.545)PT(0.453)GPS(0.002)NSFLANMGGTVAHK;S(0.962)PT(0.038)GPSNSFLANMGGTVAHK;S(0.995)PT(0.005)GPSNSFLANMGGTVAHK;S(0.796)PT(0.204)GPSNSFLANMGGTVAHK;S(0.938)PT(0.062)GPSNSFLANMGGTVAHK;S(0.971)PT(0.029)GPSNSFLANMGGTVAHK;S(0.954)PT(0.046)GPSNSFLANMGGTVAHK;S(0.918)PT(0.082)GPSNSFLANMGGTVAHK;S(0.572)PT(0.427)GPSNSFLANMGGTVAHK;S(0.708)PT(0.292)GPSNSFLANMGGTVAHK;S(0.679)PT(0.321)GPSNSFLANMGGTVAHK;S(0.907)PT(0.091)GPS(0.001)NS(0.001)FLANMGGTVAHK;S(0.961)PT(0.039)GPSNSFLANMGGTVAHK;S(0.868)PT(0.132)GPSNSFLANMGGTVAHK;S(0.87)PT(0.13)GPSNSFLANMGGTVAHK;S(0.967)PT(0.033)GPSNSFLANMGGTVAHK;S(0.995)PT(0.005)GPSNSFLANMGGTVAHK 364.26 3.898499999999998e-112 86160650000.0 11802666.0 11504288.0 11274322.0 10177781.0 10712150.0 13153484.0 12623154.0 11869329.0 14960245.0 12919122.0 True False 11739121.757655483 11887201.271591062 12861648.53943644 11466287.03104861 12076278.80661254 12244214.611050809 12012523.815888857 12755078.601211421 11273493.07676255 12094612.573343188 0.9706075069761875 0.9828509346211498 1.0634196392353914 0.9480491385330175 0.9984841377415383 1.0123693121049075 0.9932127832159539 1.0546082831395456 0.9321086565112136 1.0 23.52786122042738 2.995237225977576 24.643981350971227 1.005704524523902 0.9929741038218042 0.0 0.03952784229477733 944.9321464732791 4889417.388757504 0.011389203453927034 0.013243906788398417 989.0932224835261 -2.995237225977576 -0.012730420702097844 S(ph)PTHLTVSSTNTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTHLTVSSTNTLR 14 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 S(0.721)PT(0.268)HLT(0.01)VS(0.001)STNTLR;S(0.862)PT(0.138)HLTVSSTNTLR 184.22 8.486100000000002e-07 396220000.0 177943.0 249154.0 204907.0 196170.0 199602.0 217532.0 224925.0 177297.0 235439.0 204399.0 True False 176984.97465932585 257446.94027322636 233756.12451642763 221005.10188623663 225020.13156625658 202494.52485524825 214044.51845305896 190527.80243592392 177418.2131709673 191354.0808252121 0.9249082846630725 1.3453956098714468 1.2215894404151573 1.154953690734762 1.1759358911806848 1.0582190041727522 1.1185782792297643 0.9956819400677276 0.9271723519344529 1.0 17.545885142746688 2.051821193792474 1.0182953594577293 0.9596971779058336 1.1781637351877972 0.36404369906336564 0.10295907223914541 0.5236513221863357 1.0042268128488645 0.07677708924130788 0.037472720813599154 112.67334658978278 -2.051821193792474 0.2184665572819635 S(ph)PTKTDPK ddPTM_BT-474_Trastuzumab_2h_R1 7 SPTKTDPK 8 1 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-3 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 S(0.984)PT(0.016)KTDPK;S(0.976)PT(0.024)KTDPK;S(0.999)PT(0.001)KTDPK;S(0.954)PT(0.046)KTDPK;S(0.896)PT(0.102)KT(0.001)DPK;S(0.901)PT(0.099)KTDPK;S(0.803)PT(0.188)KT(0.009)DPK 112.13 0.0048239 7069980000.0 15990150.0 9796980.0 8442870.0 6984670.0 7818790.0 7760750.0 11658360.0 12557340.0 20552180.0 12787500.0 True False 15904060.809072673 10123066.556900539 9631552.709258422 7868928.505845658 8814466.560900865 7224267.619340438 11094400.587539867 13494432.475680504 15487370.624102613 11971390.802070446 1.3285056909446205 0.8456048862050146 0.8045475140275806 0.6573111375233637 0.7362942791389291 0.6034610129084588 0.9267428297154158 1.1272234528795642 1.2936985251057112 1.0 23.513087434428662 1.8049154250107213 3.3586618146271463 1.161481481381295 0.8145798216515407 0.3271854107530334 0.19689587696805583 0.2573954623303991 5.299603660149521 0.10759036951980928 0.054951179146092086 63.81392021530591 -1.8049154250107213 -0.3469016597297543 S(ph)PTKTDPKNEEEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTKTDPKNEEEEK 14 2 Q5BKZ1;A0A0A0MRN4;Q5BKZ1-3 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 S(0.983)PT(0.017)KTDPKNEEEEK;S(0.979)PT(0.021)KTDPKNEEEEK 143.46 4.7591e-06 1046000000.0 1099660.0 707630.0 537690.0 614120.0 604190.0 1065040.0 1125680.0 953640.0 2554300.0 990880.0 True False 1093739.5527437103 731183.0367786313 613392.0783147389 691867.5290328584 681130.0151853012 991416.2916344877 1071226.5578848037 1024805.4592857999 1924826.9908664345 927641.1900649519 1.179054535802931 0.788217518378453 0.6612385099801252 0.7458352824807348 0.7342602101763178 1.0687497517925766 1.154785459461754 1.1047433751988145 2.074969300071358 1.0 19.823207355851412 1.9502131918844166 1.3217057944208128 1.4614043826957912 0.8201284485344579 0.4102603291424831 0.2970175784118062 0.409781268884524 1.3271852591528637 0.21033524202315731 0.0948121817995549 89.16885538971417 -1.9502131918844166 -0.6412759341613333 S(ph)PTLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTLLR 6 0 P55197-1;P55197;Q5JT35;H0Y5P4 P55197-1 MLLT10 Protein AF-10 1 S(0.99)PT(0.01)LLR 99.375 0.040772 312650000.0 80439.0 85625.0 71810.0 78095.0 73977.0 72284.0 81498.0 72624.0 83001.0 84475.0 True False 80005.92536161299 88474.97636359445 81920.22381629069 87981.81899273934 83397.53245396826 67287.17721823334 77555.6303874064 78043.5716571997 62546.515706418555 79083.73317731384 1.0116609591789438 1.11875063061609 1.035866928950068 1.1125147417544778 1.0545472387726367 0.8508346092788587 0.9806774069898638 0.9868473391641491 0.7908897720620099 1.0 16.271093355185048 2.864295347614412 6.820672960799642 0.9317661155799679 1.0721560086903192 0.5345337940508457 0.0673161576782057 0.20104751250064726 10.323793358804977 0.01993984149615579 0.021197021291613032 731.6364732413476 -2.864295347614412 0.14038989311035133 S(ph)PTLSQVHSPLVT(ph)SPSANLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTLSQVHSPLVTSPSANLK 20 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 2 S(0.933)PT(0.016)LS(0.048)QVHS(0.002)PLVT(0.454)S(0.303)PS(0.243)ANLK;S(0.756)PT(0.239)LS(0.005)QVHSPLVT(0.746)S(0.24)PS(0.014)ANLK 124.82 4.6508e-05 359410000.0 272870.0 270570.0 252400.0 232730.0 231340.0 256670.0 224830.0 227420.0 254060.0 251090.0 True False 271400.8982387074 279575.7588869812 287935.72609987186 262193.5941376558 260799.7777403926 238927.0070361902 213954.11396599413 244391.23521536076 191450.31722958383 235065.22123103592 1.154577001299391 1.1893539904493047 1.2249184485563336 1.1154078547415422 1.109478366789374 1.0164285715467822 0.9101904264931963 1.0396741548387487 0.8144561591330229 1.0 17.842701577149015 2.847510535914625 1.2253009918100808 0.9465539855026293 1.1871421373586626 0.7512098032336112 0.06046971339378414 0.21832989950806203 0.6824524842054968 0.026001167704410688 0.02708981735595156 703.8993042137878 -2.847510535914625 0.24058815185603333 S(ph)PTLSQVHSPLVTSPSANLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTLSQVHSPLVTSPSANLK 20 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 S(0.954)PT(0.043)LS(0.002)QVHSPLVTSPSANLK 135.86 4.1365e-06 516260000.0 186440.0 170650.0 169840.0 140810.0 142760.0 195980.0 178920.0 181250.0 218520.0 180720.0 True False 185436.22775543152 176329.98208989677 193751.99572425615 158636.53156242543 160939.63979518646 182432.36388729714 170264.9560592255 194775.79536885128 164668.67401798264 169186.29487782394 1.096047572230022 1.04222379370168 1.1451991183102157 0.9376441021832359 0.9512569556027413 1.0782928015477773 1.0063755825031837 1.1512504337866523 0.9732979502677587 1.0 17.36825318052697 7.375089743996242 0.00521936300964824 0.1220662386446948 2.0205663324291385 0.044399337022651864 0.07153760339642914 229596.81036786665 102.62581632062317 17400.74794618951 20011.615363965808 23718637.845179595 -7.375089743996242 1.8985000937844436 S(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_BT-474_Trastuzumab_2h_R1 14 SPTMEQAVQTASAHLPAPAAVGR 23 0 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.983)PT(0.017)MEQAVQTASAHLPAPAAVGR;S(0.97)PT(0.03)MEQAVQTASAHLPAPAAVGR;S(0.974)PT(0.026)MEQAVQTASAHLPAPAAVGR;S(0.973)PT(0.027)MEQAVQTASAHLPAPAAVGR;S(0.847)PT(0.153)MEQAVQTASAHLPAPAAVGR;S(0.926)PT(0.074)MEQAVQTASAHLPAPAAVGR;S(0.969)PT(0.031)MEQAVQTASAHLPAPAAVGR;S(0.966)PT(0.034)MEQAVQTASAHLPAPAAVGR;S(0.823)PT(0.177)MEQAVQTASAHLPAPAAVGR;S(0.789)PT(0.211)MEQAVQTASAHLPAPAAVGR;S(0.906)PT(0.094)MEQAVQTASAHLPAPAAVGR;S(0.897)PT(0.103)MEQAVQTASAHLPAPAAVGR;S(0.761)PT(0.239)MEQAVQTASAHLPAPAAVGR;S(0.815)PT(0.185)MEQAVQTASAHLPAPAAVGR 277.72 5.343e-52 45277180000.0 1652582.0 1794246.0 1696357.0 1749258.0 1808144.0 2067022.0 1923774.0 1843866.0 2155953.0 1922871.0 True False 1643684.6821311223 1853966.393465387 1935189.320600634 1970713.8834445355 2038400.4206908622 1924133.6343864114 1830713.7020896499 1981464.6438818334 1624647.2714401032 1800151.7265273132 0.9130811908293793 1.0298945173037652 1.0750145624301475 1.0947487672310017 1.132349229596972 1.0688730322183857 1.016977444240933 1.1007209085115799 0.9025057429876886 1.0 20.7796870791477 -0.4470385596406836 9.376571429090859 1.0000000000051315 1.0466845757907426 0.007747936797902755 0.07325657679457385 0.0 0.0 0.06903149544469395 0.016270879514797124 0.35724111842883877 0.4470385596406836 0.04668457578561114 S(ph)PTNSLLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPTNSLLK 8 0 Q14106-2;Q14106 Q14106-2 TOB2 Protein Tob2 1 S(0.999)PT(0.001)NSLLK;S(0.997)PT(0.003)NSLLK;S(0.999)PT(0.001)NSLLK 127.51 0.0012305 862990000.0 1204110.0 1140460.0 1004070.0 903470.0 950900.0 1123810.0 1136700.0 1013350.0 1541170.0 1259040.0 True False 1197627.205549197 1178419.5216773702 1145434.3284671071 1017849.2093651337 1071991.4785741295 1046123.659864186 1081713.4783843157 1088971.322687036 1161369.3041199616 1178686.9892816264 1.0160689109490502 0.9997730800401732 0.971788387318345 0.8635449602998346 0.9094793514497649 0.8875330510789521 0.9177275122410462 0.9238850794057976 0.9853076471369049 1.0 20.168749218120027 3.9760871616149918 5.734684643990398 0.9205864659064817 1.0035401720650208 0.41042994483413053 0.03895872424033364 0.14606300541762088 15.82501889075948 0.00973863292219117 0.019059290275546918 9464.27087416988 -3.9760871616149918 0.08295370615853903 S(ph)PTPALCDPPACSLPVASQPPQHLSEAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTPALCDPPACSLPVASQPPQHLSEAGR 29 0 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 S(0.783)PT(0.217)PALCDPPACSLPVASQPPQHLSEAGR 217.08 1.6397999999999994e-34 436170000.0 67758.0 154710.0 176110.0 167960.0 173890.0 191850.0 194640.0 160970.0 119680.0 193750.0 True False 67393.19845662144 159859.42882583005 200904.75722443874 189223.71877867336 196033.86077322043 178587.8610663227 185224.51960299394 172982.39878909773 90186.4676298377 181384.70912227937 0.371548399987723 0.8813280325524122 1.1076168338368593 1.0432175881546297 1.0807628808504768 0.9845805742419489 1.0211694276727923 0.9536768541635047 0.49721097255799585 1.0 17.468693315070208 4.721936976601818 3.759878810854417 0.9708779159346727 0.3191009360300443 0.5371919657588231 0.16277664743119338 0.17923115398445502 4.882002116790439 0.03902842270867875 0.3160554954846607 52715.33570967617 -4.721936976601818 -0.6517769799046284 S(ph)PTPESSTIASYVTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTPESSTIASYVTLR 16 0 Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;B4DJX4;Q9HAU0-5;Q9HAU0-8;H0YGJ6 Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 S(0.95)PT(0.049)PESSTIASYVTLR;S(0.998)PT(0.002)PESSTIASYVTLR 159.34 9.6131e-09 337320000.0 57833.0 59602.0 69862.0 74963.0 73124.0 70410.0 75849.0 61070.0 68265.0 85680.0 True False 57521.63355385033 61585.81653983017 79697.96234861028 84453.3081138704 82435.90796009534 65542.72242731182 72179.89409868211 65627.3535071764 51442.005454135026 80211.8290456615 0.7171215796750562 0.7677897047425728 0.9935936294787805 1.0528784733956682 1.0277275676280584 0.8171204073902973 0.8998659544042173 0.818175502142175 0.6413269223028323 1.0 16.29152738988414 -0.640980795566479 7.509073680486424 1.0000026052186213 0.8683651859187888 0.09328613975241562 0.1287623563512405 0.0 0.0 0.13129032587408973 0.03094542657658684 0.22856998744288354 0.640980795566479 -0.13163741929983253 S(ph)PTPPPSSKPSSIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTPPPSSKPSSIPR 15 1 B4E2D5;R4GND2;F6S7C4;Q8NEM7-2;Q8NEM7;Q8NEM7-3;H7C5F9 B4E2D5 SUPT20H Transcription factor SPT20 homolog 1 S(0.606)PT(0.394)PPPSSKPSSIPR 82.449 0.0066587 399180000.0 313390.0 360280.0 303180.0 304640.0 291150.0 331200.0 319420.0 288590.0 388810.0 320530.0 True False 311702.74306090194 372271.70200614113 345865.1087121993 343207.3927645572 328226.2267187487 308304.92356093915 303968.4342971038 310126.05123032694 292992.98528707586 300073.50098046113 1.038754645253391 1.2406017218774046 1.152601304620763 1.1437444214272845 1.0938194330599045 1.027431354496757 1.0129799309299765 1.033500293151578 0.9764040621039499 1.0 18.194956396865038 2.9131207757324677 1.7819706323103597 1.0104265541417212 1.1537211417059845 0.6407422492540076 0.047546550646070135 0.20970235066472953 1.334941818938865 0.01622494635977309 0.018017472498551783 818.6924318988478 -2.9131207757324677 0.14329458756426328 S(ph)PTPPPTLHLVPEPAAPPPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPTPPPTLHLVPEPAAPPPPPPR 23 0 A0A087WWH3;Q9NZM4-2;Q9NZM4 A0A087WWH3 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein 1 S(0.924)PT(0.076)PPPTLHLVPEPAAPPPPPPR;S(0.998)PT(0.002)PPPTLHLVPEPAAPPPPPPR;S(0.747)PT(0.252)PPPTLHLVPEPAAPPPPPPR 219.64 1.3227e-32 1279130000.0 677730.0 799870.0 707690.0 721100.0 684760.0 726790.0 728350.0 652260.0 811600.0 749440.0 True False 674081.1769828816 826493.1894183742 807326.6006482504 812391.1860639515 771960.1271094978 676548.7179796342 693116.9279328019 700934.9533091683 611592.0548828235 701610.0975721353 0.9607632206484552 1.1779950036044047 1.1506769977255722 1.157895516149447 1.100269408580069 0.9642801896962088 0.987894744290706 0.9990377215702807 0.8716979088516372 1.0 19.4203099856351 2.777522711024225 4.64092394579775 0.9688460459059489 1.1200161704307365 0.5482953261502032 0.06553038317239349 0.15510019827264032 8.014691156429768 0.020203497999587185 0.02096267467707454 599.1322688544606 -2.777522711024225 0.15117012452478762 S(ph)PTQIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTQIVK 7 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.997)PT(0.003)QIVK;S(0.999)PT(0.001)QIVK 120.99 0.004701100000000001 643810000.0 667270.0 603020.0 571180.0 474880.0 523870.0 621680.0 615970.0 595130.0 669970.0 604560.0 True False 663677.492460666 623091.156166712 651597.1792144399 534999.7593094561 590581.7392792399 578704.7248773079 586173.1778660913 639541.6226089061 504864.8706380547 565976.4632101443 1.1726238379178777 1.1009135479461827 1.1512796407092023 0.9452685651891027 1.0434740270461738 1.022489030011903 1.0356847253707226 1.1299791849673568 0.8920244982883693 1.0 19.110382532589284 3.7623073724043654 24.619936338562038 1.0250460813705775 1.1375364856129278 0.47200045463732987 0.06238429829672918 653.6246718532914 677656.1292259068 0.016052659639693448 0.028916220683351056 5785.053403502763 -3.7623073724043654 0.11249040424235024 S(ph)PTTTQSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPTTTQSPK 9 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 S(0.877)PT(0.121)T(0.002)TQSPK;S(0.944)PT(0.049)T(0.005)T(0.002)QSPK;S(0.977)PT(0.018)T(0.004)T(0.001)QSPK 136.5 0.00026502 290660000.0 390820.0 400438.0 392737.0 318006.0 323892.0 335148.0 368655.0 376478.0 468777.0 365950.0 True False 388715.868544184 413766.33676011703 448030.95586880035 358265.52699411014 365137.7263417105 311980.007613531 350821.74925113865 404572.7000765477 353253.1896399771 342594.75769444223 1.1346229322366832 1.207742755740449 1.3077577686357824 1.0457414159081926 1.0658006818288042 0.9106385915332181 1.0240137695394453 1.1809074452837458 1.0311109020384983 1.0 18.38614355024257 3.717137532109166 24.231435773554153 1.047667940430616 1.2158113051315738 0.5491508297423147 0.07421523740795889 443.77340411262725 501947.6389628099 0.02161302851194226 0.03352249075515438 5213.59788862314 -3.717137532109166 0.1681433647009578 S(ph)PTVEPSTLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTVEPSTLPR 11 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 S(0.853)PT(0.147)VEPSTLPR;S(0.97)PT(0.03)VEPSTLPR 87.667 0.014217 1551290000.0 308440.0 402270.0 355460.0 351150.0 358750.0 337160.0 358650.0 364190.0 372630.0 410150.0 True False 306779.39331090567 415659.31377265014 405505.6782862929 395605.55399577983 404434.6860221573 313852.9227892696 341300.72932395065 391367.70711934817 280800.32948618353 383973.8758529185 0.7989590245676448 1.0825197752043652 1.0560762171268707 1.0302928893717678 1.0532869850163358 0.8173809275230256 0.8888644535147651 1.0192560789454903 0.7313006096116402 1.0 18.55064863314489 2.753756316820649 24.90296077548469 0.9028801670595666 1.0129051982163078 0.21225068838404249 0.10692878024795842 1262.5327936076842 2069056.9017906403 0.03195666260476838 0.0337758030922891 567.2262447421476 -2.753756316820649 0.11002503115674112 S(ph)PTVLCQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPTVLCQK 8 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 S(0.999)PT(0.001)VLCQK;S(1)PTVLCQK;S(1)PTVLCQK 157.99 0.00038601 938320000.0 1204400.0 1090460.0 1012680.0 923060.0 910080.0 1178730.0 1189840.0 1035710.0 1348420.0 1169000.0 True False 1197915.6442214195 1126755.301903009 1155256.541627646 1039919.3013565253 1025973.2935332259 1097247.1695319598 1132282.8935698015 1112999.9394288156 1016119.9589022874 1094393.4191687482 1.0945932452072875 1.0295706115985614 1.0556135676557035 0.9502243737415755 0.9374812344106646 1.0026076092136766 1.034621438449285 1.017001674109298 0.9284777677794209 1.0 20.061700029440267 3.7605644617053873 23.338449629070542 0.9863756756211096 1.0568903270127148 0.4959365496714534 0.035963817672244595 343.3030575450118 364122.61786075466 0.009939086920412782 0.017893794620128158 5761.883350191033 -3.7605644617053873 0.07051465139160518 S(ph)PVEMDEDFDVIFDPYAPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPVEMDEDFDVIFDPYAPK 19 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425;A0A0J9YWY6 O95425-2 SVIL Supervillin 1 S(1)PVEMDEDFDVIFDPYAPK;S(1)PVEMDEDFDVIFDPYAPK;S(1)PVEMDEDFDVIFDPYAPK;S(1)PVEMDEDFDVIFDPYAPK 152.94 3.2693e-08 49210000.0 110963.0 113822.0 95767.0 88609.0 71390.0 106008.0 99425.0 90377.0 157457.0 98283.0 True False 110365.58753714824 117610.4964631479 109250.1611783137 99826.89031471449 80481.09333831853 98679.91647599047 94615.43290961599 97121.39066510719 118653.83216570335 92010.49479569026 1.1994891211292316 1.2782291490150397 1.1873663044732474 1.0849511301551042 0.8746947130001548 1.072485445221327 1.0283113151354093 1.0555468795246206 1.2895684609584455 1.0 16.48951080513409 3.7854878445487263 3.3438080171442865 1.0504895934112324 1.2359678311219957 0.3771984251662961 0.09780555392072696 0.2478275725120076 5.633162576164663 0.02627574891112706 0.04941212684059652 6102.219769265892 -3.7854878445487263 0.18547823771076333 S(ph)PVGKS(ph)PPSTGSTYGSSQK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 S(1)PVGKS(0.507)PPS(0.409)T(0.058)GS(0.023)T(0.003)YGSSQK;S(1)PVGKS(0.985)PPS(0.013)T(0.002)GSTYGSSQK;S(1)PVGKS(0.614)PPS(0.332)T(0.05)GS(0.004)TYGSSQK;S(1)PVGKS(0.787)PPS(0.174)T(0.027)GS(0.005)T(0.006)YGSSQK 137.42 2.2221000000000003e-06 5416700000.0 3307510.0 2053770.0 1872580.0 1515580.0 1806790.0 2842150.0 2382490.0 2574550.0 3602000.0 2456510.0 True False 3289702.7336589033 2122128.4929198157 2136222.98724286 1707452.2726040815 2036873.996816649 2645678.860201456 2267239.856704358 2766675.994300005 2714335.3643271686 2299733.4286759812 1.4304713288239126 0.9227715118884812 0.9289002632243082 0.7424566044539814 0.8857000430651358 1.1504284919338 0.9858707224209327 1.2030420394823131 1.1802826060105083 1.0 21.133035211617514 1.7510652402545008 24.999850693919807 1.1447544398283773 0.9911558692618491 0.07987522191191299 0.18042498628395318 7.77617079600181 15571.347966119432 0.08454025545973987 0.046882030963895545 56.37223325320617 -1.7510652402545008 -0.15359857056652826 S(ph)PVGKSPPSTGSTYGSSQKEESAASGGAAYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.208)PVGKS(0.188)PPS(0.158)T(0.158)GS(0.158)T(0.047)Y(0.025)GS(0.026)S(0.026)QKEES(0.003)AAS(0.001)GGAAYTK 49.148 0.042586 416640000.0 184150.0 150170.0 155470.0 171340.0 163840.0 217120.0 236200.0 201140.0 338930.0 246230.0 True False 183158.5568609885 155168.31767031798 177358.82463053497 193031.62643211416 184704.05284423748 202111.00544550433 224774.10362837595 216150.0881682244 255405.24292931927 230515.39059189087 0.7945610763372244 0.6731364759285471 0.769401228157189 0.8373914901580749 0.8012656004008049 0.8767787908935146 0.9750936935326829 0.9376818077665838 1.1079747962750734 1.0 17.814503551292496 2.480000466638101 0.7008105517596582 1.0399481169992222 0.7362576793988771 0.8262508320696745 0.05088437058852915 0.272259318999912 0.27132429705181493 0.03909960762722081 0.03077717069579378 301.99549652631686 -2.480000466638101 -0.3036904376003451 S(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_BT-474_Trastuzumab_2h_R1 6 SPVIGSEVFLPNSNHVASGAGEAEER 26 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;H3BVD2;P29590-12;P29590-13;P29590-11 P29590-2;P29590-12 PML Protein PML 1 S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER 348.58 4.685699999999997e-110 9561870000.0 333465.0 398459.0 431590.0 448039.0 421557.0 442865.0 432300.0 393780.0 390907.0 423735.0 True False 331669.66149144457 411721.466941448 492354.12055247114 504760.69146152603 475239.78518590203 412250.78494207474 411387.99745362817 423165.86317432334 294573.207735436 396691.86952221475 0.8360888815062317 1.0378873341602268 1.2411500168770142 1.272425099282907 1.1980073747372042 1.0392216645090295 1.0370467081896935 1.0667369202297856 0.7425743514487128 1.0 18.597659303177416 1.378874340796803 5.965724551902901 0.8727160488800851 1.101375836986703 0.30701833080216334 0.13196802773400199 0.25140209047365175 11.917866877568862 0.09527520847180004 0.034441100004626406 23.92623372184182 -1.378874340796803 0.2286597881066179 S(ph)PVLEEAPFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPVLEEAPFSR 11 0 K7EL81;Q9BZL4-3 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 S(1)PVLEEAPFSR 71.176 0.039863 0.0 110230.0 91370.0 74640.0 104450.0 90613.0 115510.0 95728.0 98610.0 113720.0 90822.0 True False 109636.53392770428 94411.19521566869 85148.66321748978 117673.35929050008 102152.0284446709 107525.06558129237 91097.27092352754 105968.77893143409 85695.22976992938 85025.6622033738 1.2894522793067282 1.1103847093815693 1.0014466340035293 1.3839746288483576 1.2014258495315493 1.2646189726120804 1.071409131817533 1.24631524395501 1.007874887995039 1.0 16.375610716634323 1.2273894630209226 24.873484671610512 1.0039372156816546 1.1920474884391405 0.3444872418462839 0.10592705426503345 255.23489721901618 568281.8543032769 0.0949512516028261 0.024632417814682256 16.880661568558292 -1.2273894630209226 0.18811027275748593 S(ph)PVLQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPVLQEK 7 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 S(1)PVLQEK;S(1)PVLQEK;S(1)PVLQEK;S(1)PVLQEK 99.53 0.010972 1551980000.0 2240310.0 2070320.0 1876940.0 1522480.0 1642670.0 2033990.0 2001250.0 2114650.0 2535120.0 1940870.0 True False 2228248.419881843 2139229.349665131 2141196.83734506 1715225.8118966077 1851854.2876321005 1893385.0587974456 1904441.8919825912 2272455.920975123 1910373.6448676004 1817002.0149375945 1.2263323879464012 1.1773401086396722 1.1784229294971915 0.943986741784388 1.0191811965028024 1.0420379522047336 1.0481231590973221 1.2506623010284175 1.0513877415448065 1.0 20.793128588752484 3.967138426611509 24.209738942500053 1.0695930700603942 1.1958476245941196 0.41043476222903863 0.07666230692406528 514.6578240225246 379159.07367321214 0.02253653720874567 0.04067360689740715 9271.252873241905 -3.967138426611509 0.12625455453372547 S(ph)PVPAQIAITVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPVPAQIAITVPK 13 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK 187.37 7.3621e-06 2284020000.0 867006.0 892673.0 720876.0 748121.0 842959.0 916923.0 792190.0 882549.0 1216490.0 917540.0 True False 862338.1360294227 922385.0811727757 822369.0748334833 842833.0418934262 950304.8320405617 853538.2712145724 753868.7432403192 948409.2878730156 916702.3396308599 858981.8116544841 1.0039073288041733 1.0738121211160112 0.9573765866468336 0.9812001027938487 1.106315429671532 0.9936627989486448 0.8776306238525508 1.1041086959062443 1.067196449556016 1.0 19.7122680580547 1.6248555122885737 24.999999999957332 1.0642444963347275 1.002704281923595 0.1463033313795863 0.06305668708616634 1.546388493771799 2270.0977010357656 0.029348308557293444 0.01622154712420353 42.15562303401488 -1.6248555122885737 -0.061540214411132554 S(ph)PVPSAFSDQSR ddPTM_BT-474_Trastuzumab_2h_R1 10 SPVPSAFSDQSR 12 0 Q9UQ35;Q9UQ35-2;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(1)PVPSAFSDQSR;S(0.996)PVPS(0.004)AFSDQSR;S(0.999)PVPS(0.001)AFSDQSR;S(1)PVPSAFSDQSR;S(0.999)PVPS(0.001)AFSDQSR;S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR;S(0.999)PVPS(0.001)AFSDQSR 162.13 6.6603e-05 72802780000.0 8719261.0 8287859.0 7806686.0 6821326.0 7134828.0 8125176.0 8036584.0 7769038.0 9165235.0 8164697.0 True False 8672317.467576962 8563715.376698438 8905799.531868875 7684905.172193693 8043406.05436124 7563501.707726984 7647823.729187761 8348803.065935611 6906585.642106921 7643619.04731122 1.1345826386556517 1.1203744356818617 1.165128648712765 1.0054013844262681 1.0523033663210428 0.989518402331626 1.000550090454602 1.092257870814801 0.9035753351073189 1.0 22.865824446507872 3.733722022176836 24.956064219240368 1.0155427248589715 1.1380631629047506 0.6261456546601916 0.04698645592345683 259.77606477530423 1339849.4388172252 0.012144482696456458 0.019474514090416804 5416.540841984968 -3.733722022176836 0.12252043804577917 S(ph)PVPTTLPGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPVPTTLPGLR 11 0 F8VV64;Q63HR2-5;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4 F8VV64 TNS2 Tensin-2 1 S(1)PVPTTLPGLR 92.866 0.01015 140780000.0 34366.0 36637.0 33339.0 36932.0 32134.0 39483.0 41319.0 39900.0 34497.0 34582.0 True False 34180.97727442156 37856.4403974658 38032.84141221722 41607.58741327674 36226.074426859916 36753.633142984734 39320.24211609177 42877.54060809467 25995.67658611726 32374.947152860266 1.0557848052394962 1.1693128090286706 1.1747614979151275 1.2851785430513294 1.1189539323667872 1.1352492088851986 1.214526835532391 1.3244049605902297 0.8029565720486618 1.0 14.982590217372003 1.2344152734291503 24.999995529775703 0.9014782297269145 1.1914491111456464 0.6337703817405317 0.08602065035188303 67.65657871757531 408000.70798938064 0.0739420669117009 0.021088228711924412 17.15596981417316 -1.2344152734291503 0.28997088141873195 S(ph)PVQLEEAPFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPVQLEEAPFSR 12 0 Q9BZL4-5;Q9BZL4-2;Q9BZL4-4;Q9BZL4 Q9BZL4-5 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 S(1)PVQLEEAPFSR;S(1)PVQLEEAPFSR 151.3 7.2216e-05 323500000.0 73592.0 87779.0 79176.0 82117.0 81161.0 83833.0 61545.0 66101.0 74665.0 66368.0 True False 73195.7888488398 90700.670951474 90323.2925898709 92513.00378035434 91496.3722710643 78037.82203165513 58567.83322526844 71033.79227407675 56264.811209741325 62132.33741949645 1.1780626947067303 1.4597981456756386 1.4537243622437492 1.4889670600308813 1.4726047026576814 1.2559936624429602 0.9426304507077903 1.1432660547515008 0.9055640516122936 1.0 15.923056709059747 2.438428311247869 3.838690855430031 1.022864836140326 1.4178096099034831 0.7804700286410723 0.10269656330685911 0.10290375921108617 3.258920011529189 0.036523119046480555 0.030882582860775474 274.4279309406803 -2.438428311247869 0.39494477376315706 S(ph)PVREPIDNLTPEER ddPTM_BT-474_Trastuzumab_2h_R1 2 SPVREPIDNLTPEER 15 1 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;H0Y4X3;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 1 S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER 153.36 1.6149e-06 572330000.0 90876.0 123448.0 101798.0 91914.0 103682.0 107382.0 113203.0 88332.0 122539.0 98492.0 True False 90386.73371327276 127556.89205410828 116130.27355592212 103550.30297584532 116885.288128639 99958.93509003849 107726.93841254464 94923.78238080743 92340.90538847503 92206.15623675639 0.9802678845129177 1.3833880215826622 1.2594633405793005 1.1230302530989442 1.2676516720696434 1.0840809244165368 1.168326962203432 1.0294733698374003 1.0014613899680695 1.0 16.492575456405135 1.9086468704022306 0.9671780354785056 0.9869582903476309 1.2113017522800813 0.3629142056888499 0.10391234522945603 0.5368637061707091 0.9240749765389372 0.08215419943077064 0.0369795106718367 81.03019245500943 -1.9086468704022306 0.22434346193245036 S(ph)PVS(ph)PLAAQGIPLPAQLTK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 2 S(1)PVS(1)PLAAQGIPLPAQLTK;S(1)PVS(1)PLAAQGIPLPAQLTK;S(1)PVS(1)PLAAQGIPLPAQLTK;S(1)PVS(1)PLAAQGIPLPAQLTK;S(1)PVS(1)PLAAQGIPLPAQLTK 202.52 8.020899999999999e-16 2324680000.0 2261208.0 2037743.0 1806642.0 1825988.0 1894985.0 2328174.0 2374456.0 2252988.0 2980809.0 2429521.0 True False 2249033.907371827 2105568.043913345 2061001.4899862276 2057157.893577231 2136300.1072939304 2167232.8113120906 2259594.4919772223 2421117.4050012548 2246228.56274423 2274466.8897624263 0.9888180467673214 0.9257413477376567 0.9061470620930887 0.9044571731673379 0.939253113294198 0.9528530932092238 0.9934611500162319 1.0644768740749382 0.9875846392201622 1.0 21.11709700227283 2.224699887416779 2.5838394607077815 1.0252549078155082 0.9306403906329689 0.6170859730395273 0.02933432725606944 0.16296127187950227 2.2260102075085166 0.012878540503962118 0.009007581895424723 167.76443069367514 -2.224699887416779 -0.09461451718253933 S(ph)PVSPLAAQGIPLPAQLTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 1 S(0.953)PVS(0.047)PLAAQGIPLPAQLTK;S(0.904)PVS(0.096)PLAAQGIPLPAQLTK;S(0.769)PVS(0.231)PLAAQGIPLPAQLTK 296.53 1.0782999999999999e-49 2522535000.0 1751080.0 1581280.0 1442879.0 1450760.0 1466438.0 1768500.0 1588540.0 1714470.0 2366460.0 1778660.0 True False 1741652.3798432772 1633911.9488960558 1646023.8214709074 1634426.0672502248 1653180.1870410051 1646247.757601208 1511696.2513878928 1842412.4573022593 1783277.6419393895 1665144.3960125616 1.0459467563377238 0.9812434001571896 0.9885171672874489 0.9815521531730843 0.9928149120279258 0.9886516517987243 0.9078469440895796 1.1064580715727672 1.0709447458188706 1.0 20.667215857959203 1.7022898933434936 11.890007664283454 1.0658241867328817 0.9843588293938613 0.42682047713688187 0.03974873946325128 0.09851425005250594 25.264097748790086 0.017846062769378494 0.009753607732047564 50.383680969949474 -1.7022898933434936 -0.08146535733902038 S(ph)PVSSLQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPVSSLQIR 9 0 P55197-1;P55197;Q5JT35 P55197-1 MLLT10 Protein AF-10 1 S(1)PVSSLQIR;S(1)PVSSLQIR 115.89 0.0014719000000000002 542020000.0 111786.0 95258.0 88580.0 102066.0 110759.0 118884.0 106251.0 111562.0 168773.0 132991.0 True False 111184.15659659206 98428.60494532307 101051.29404883765 114987.54513493738 124863.50212997386 110665.82890283407 101111.2332117638 119887.32294035741 127181.15559233456 124503.40052067644 0.8930210430527764 0.7905696112209956 0.8116348117901883 0.9235695141984596 1.0028923034053003 0.8888578821142773 0.8121162377004484 0.962924084314047 1.021507485421761 1.0 16.925825621126304 2.9636131765054423 0.22252578604783213 1.0262007611343562 0.767653886154072 0.3750087959176853 0.06441945419959015 5.887032602455419 0.5859324913055229 0.16231342218269057 0.4591908780970332 919.6300978355217 -2.9636131765054423 -0.25854687498028417 S(ph)PVSTRPLPSASQK ddPTM_BT-474_Trastuzumab_2h_R1 8 SPVSTRPLPSASQK 14 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.976)PVS(0.021)T(0.002)RPLPSASQK;S(0.996)PVS(0.003)T(0.001)RPLPSASQK;S(0.999)PVS(0.001)TRPLPSASQK;S(1)PVSTRPLPSASQK;S(0.335)PVS(0.333)T(0.333)RPLPSASQK;S(0.946)PVS(0.049)T(0.005)RPLPSASQK;S(0.999)PVS(0.001)TRPLPSASQK;S(0.995)PVS(0.004)T(0.001)RPLPSASQK 219.89 1.2737e-11 58246610000.0 10226450.0 10278950.0 9161080.0 8749240.0 8898850.0 11152770.0 11715460.0 10517930.0 13458040.0 10823500.0 True False 10171391.92946542 10621078.63699351 10450880.434465174 9856892.886920217 10032065.79988368 10381805.260696653 11148738.442396691 11302831.345566344 10141486.370496837 10132734.96353544 1.0038150574419538 1.0481946557583386 1.0313977886596897 0.9727771349386033 0.9900649563998234 1.0245807571260415 1.1002694220778035 1.1154768565685096 1.000863676686787 1.0 23.272520294005083 2.393899515944574 6.468121559182173 1.0703281163482399 1.0103028014892133 0.17273731680845805 0.04056845134518404 0.2578298470813597 16.260390781060387 0.014526348065458048 0.012116263923816654 247.68489151486952 -2.393899515944574 -0.060025314859026624 S(ph)PVVELSK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPVVELSK 8 0 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 1 S(1)PVVELSK;S(1)PVVELSK;S(1)PVVELSK;S(1)PVVELSK;S(0.999)PVVELS(0.001)K 123.75 0.0013995999999999998 1447900000.0 2790160.0 2602840.0 2388790.0 2102240.0 2190710.0 2667520.0 2437580.0 2382600.0 3004030.0 2334730.0 True False 2775138.088575919 2689473.9559499943 2725110.8682651054 2368383.3684524745 2469683.9331445294 2483120.621066651 2319664.942940126 2560401.7105976515 2263727.058439684 2185725.5325370855 1.2696644877248937 1.2304719489771352 1.246776334767855 1.0835685145258693 1.1299149396300636 1.136062412275691 1.0612791534935178 1.171419591564939 1.0356867890050487 1.0 21.05968081859187 7.999999999999999 0.17346887804788005 1.0108460348102049 2.116187105106176 0.7257957479333992 0.04602205826492739 32.641276933593126 0.357523932667467 0.11444137388333969 9.426893251828451 99999999.99999979 -7.999999999999999 1.105341070295971 S(ph)PYCKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPYCKR 6 1 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 S(0.89)PY(0.11)CKR 65.331 0.063901 116730000.0 111310.0 123750.0 110590.0 110210.0 110620.0 107980.0 123800.0 115610.0 170220.0 137110.0 True False 110710.71932770366 127868.9439415453 126160.11073448813 124162.5746999142 124706.80130389136 100515.59675757893 117811.32103807366 124237.40525568495 128271.56183114141 128359.52241422335 0.8625049177920278 0.996178090542477 0.9828652238776833 0.9673031837812128 0.9715430453336804 0.7830786128450173 0.9178229929672841 0.9678861600525741 0.9993147327021202 1.0 16.96983080136056 1.5202639231769328 3.524039487236976 0.9971739810763316 0.9289501606449874 0.1961448406993338 0.06048833398693567 0.3834184061190865 10.25910811047679 0.043176969303008926 0.01675615374365879 33.133241286723035 -1.5202639231769328 -0.06822382043134423 S(ph)PYKFPS(ph)SPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPYKFPSSPLR 11 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 2 S(0.998)PY(0.002)KFPS(0.564)S(0.436)PLR;S(0.994)PY(0.008)KFPS(0.541)S(0.458)PLR 85.988 0.0084246 630180000.0 755360.0 670000.0 634330.0 568580.0 602030.0 814010.0 808320.0 704620.0 1122120.0 889330.0 True False 751293.2256883862 692300.5449764468 723638.150304801 640562.1697021793 678694.9519886259 757739.4046734301 769218.4735177342 757202.3223878612 845588.5616376476 832572.1980062808 0.9023760671896932 0.8315201331899676 0.8691596380922414 0.7693773239559303 0.8151784957675298 0.9101185536677191 0.923906029242561 0.9094734657259705 1.015633915788368 1.0 19.667215857959203 1.7810481171739483 0.9216343131340754 1.0048388906157897 0.838503507109659 0.6915432668760325 0.04071967638613155 0.32343180666888116 0.5132626261741 0.036770436252421386 0.015734364500026708 60.40155468998066 -1.7810481171739483 -0.16633538350613064 S(ph)PYNGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPYNGVR 7 0 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 S(0.997)PY(0.003)NGVR 67.507 0.068155 513500000.0 122080.0 169430.0 163280.0 133900.0 152350.0 183430.0 162450.0 143260.0 181670.0 136320.0 True False 121422.73484436305 175069.37512740234 186268.404744798 150851.72627092362 171750.86945080297 170749.9158477748 154591.6728807356 153950.78865953974 136899.8627532807 127619.9408905763 0.9514401432647046 1.3718026658350364 1.4595556418922648 1.1820388351399307 1.3457996317210752 1.337956393461888 1.211344181809999 1.2063223629882418 1.0727152966687328 1.0 16.961494245359724 1.2817898408170556 1.3774364157321983 0.9991548477669062 1.2837492387437537 0.3309661975901721 0.1302865863653304 0.4233697731311159 1.5324438224747867 0.11655912885539879 0.03653697150157902 19.13329822674398 -1.2817898408170556 0.28459439097684747 S(ph)PYQEFTDHLVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPYQEFTDHLVK 12 0 P15880;H0YEN5;E9PQD7 P15880 RPS2 40S ribosomal protein S2 1 S(1)PYQEFTDHLVK;S(0.994)PY(0.005)QEFT(0.001)DHLVK;S(1)PYQEFTDHLVK 164.93 3.6052e-05 213370000.0 332440.0 299050.0 270299.0 252522.0 248428.0 350100.0 309748.0 296454.0 433170.0 341940.0 True False 330650.17997755617 309003.6984704572 308354.74971897487 284491.25930833584 280063.83325188153 325898.4110467531 294764.305887732 318576.90284290974 326421.057680622 320117.0964504377 1.0329038456362147 0.9652833350570481 0.963256112023108 0.8887099828870976 0.8748793374590744 1.0180599994827535 0.9208015103103657 0.9951886555744567 1.0196926727753208 1.0 18.288240203196633 1.5840677680932447 5.587839748387906 1.0089700119481173 0.95014756096128 0.2111716693551735 0.04730623154666791 0.21940797489007785 14.432749052121467 0.02706351421359339 0.012538453547844865 38.376712453372704 -1.5840677680932447 -0.05882245098683736 S(ph)PYSGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPYSGPK 7 0 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23 Q14498-2 RBM39 RNA-binding protein 39 1 S(1)PYSGPK;S(1)PYSGPK 118.33 0.005276 2173800000.0 3371200.0 2791900.0 2499500.0 2351500.0 2260100.0 2829900.0 2810500.0 2966100.0 4222500.0 3216600.0 True False 3353049.8337755306 2884826.7037608097 2851407.873956533 2649199.65889527 2547910.3383377786 2634275.67386806 2674545.377847382 3187445.443550618 3181921.45360119 3011313.8341301917 1.1134840200885432 0.9579960318530143 0.9468982746463399 0.8797487757234984 0.8461125205416307 0.8747928043936218 0.8881656064984391 1.0584899545919635 1.0566555426861637 1.0 21.52196164050505 1.710170266797294 7.5533584037988195 1.0420239671074043 0.9242167747805705 0.32147335900150165 0.07188488278416243 0.14216517099255233 19.064187657773076 0.037531322381283476 0.019691267008864994 51.30624926604665 -1.710170266797294 -0.11780719232683379 S(ph)QDDAMVDYFFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQDDAMVDYFFQR 13 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38;E9PMX1;E9PM68;E9PL65 Q5T1Z4 PUM1 Pumilio homolog 1 1 S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR 186.85 7.8216e-06 154994000.0 106802.0 107210.0 86071.0 116634.0 120125.0 145857.0 125325.0 114232.0 172968.0 133776.0 True False 106226.98989881769 110778.42004018644 98189.04865745667 131399.85244124653 135422.2067133426 135774.24890044637 119262.55096200781 122756.5718983425 130342.35405245463 125238.30114860425 0.8481989050040828 0.8845410631108759 0.7840177306537264 1.049198617644383 1.0813162225240855 1.0841272011454424 0.9522849628924159 0.9801839435100849 1.0407547280427738 1.0 16.934316318071488 3.731971591860339 24.948573729815784 1.0233818410170692 0.8434814139649167 0.7812258508120807 0.04552618700068302 248.2943680541944 940138.2869989988 0.013369888903427727 0.021266826886928575 5394.753331147484 -3.731971591860339 -0.17990042705215248 S(ph)QDIPFVSTDIINTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQDIPFVSTDIINTLK 16 0 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 S(1)QDIPFVSTDIINTLK;S(1)QDIPFVSTDIINTLK 176.42 3.3307e-09 117101000.0 208163.0 169015.0 163685.0 165584.0 166487.0 175580.0 181946.0 189494.0 268220.0 182684.0 True False 207042.2735370833 174640.56210327495 186730.42522447486 186546.9174222901 187688.13260423942 163442.56787086246 173144.57687878312 203635.0045110347 202120.774963863 171024.9507163589 1.2105968905113635 1.021140841565933 1.0918314809759142 1.0907584924943148 1.097431291855865 0.9556650487912044 1.012393666266506 1.1906742475766525 1.1818203958969462 1.0 17.3838472887228 -1.137431050869837 3.982507875318567 0.9999662548905891 1.0919177872226005 0.11455358855303444 0.07864481409718799 2.4180681678661905e-05 5.237243698266975e-06 0.07814142468886547 0.018411353021596563 0.07287338600205255 1.137431050869837 0.09195153233201137 S(ph)QDQDS(ph)EVNELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 S(1)QDQDS(1)EVNELSR;S(1)QDQDS(1)EVNELSR 239.39 1.2097e-16 382060000.0 729360.0 664720.0 494950.0 529250.0 572700.0 643840.0 537400.0 581830.0 708590.0 554210.0 True False 725433.2067995131 686844.8033682746 564634.6578174786 596252.9957347753 645629.9503411545 599332.8562363366 511403.9089326391 625249.1090728753 533967.4891195417 518839.8433169477 1.3981833048167855 1.3238089021407256 1.0882638738917279 1.1492043323483498 1.2443723408241674 1.1551403847568769 0.9856681508174651 1.205090775364614 1.0291566771470033 1.0 18.984929747296693 7.999999999999999 0.4187558596316007 1.085635637735225 7.034697182010602 0.6031766904746205 0.0823920282874219 55.45443331196179 0.7131985116982841 0.05415732944450548 276.03801989337114 99999999.99999979 -7.999999999999999 5.949061544275377 S(ph)QDVELWEGEVVK ddPTM_BT-474_Trastuzumab_2h_R1 5 SQDVELWEGEVVK 13 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK 274.52 3.7572999999999995e-32 1251843000.0 1496278.0 836105.0 823918.0 909508.0 1015333.0 1202333.0 891404.0 948462.0 1572002.0 1215682.0 True False 1488222.2055001124 863934.2494888542 939918.4927763628 1024651.619546045 1144629.6391998187 1119218.549697447 848283.3830260328 1019241.0506324474 1184603.1708475961 1138096.1339622778 1.3076419127432337 0.759104809961062 0.8258691552742911 0.9003207980144207 1.0057407323007017 0.9834130143302495 0.7453530134337045 0.8955667453890412 1.040863891456519 1.0 20.118190995275242 S(ph)QEADVQDWEFR ddPTM_BT-474_Trastuzumab_2h_R1 8 SQEADVQDWEFR 12 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 S(1)QEADVQDWEFR;S(1)QEADVQDWEFR;S(1)QEADVQDWEFR;S(1)QEADVQDWEFR;S(1)QEADVQDWEFR;S(1)QEADVQDWEFR;S(1)QEADVQDWEFR;S(1)QEADVQDWEFR 281.99 4.313e-28 10685800000.0 8077234.0 7030048.0 6561118.0 7480347.0 7263779.0 8040167.0 6448485.0 6469857.0 8688057.0 7497651.0 True False 8033747.069609069 7264038.8979262365 7484866.38414 8427358.163222745 8188778.1998587735 7484369.1798073165 6136547.144945085 6952670.582608156 6547001.766349317 7019144.494118034 1.144547897018114 1.0348894945834812 1.0663502354755963 1.2006246872798785 1.166634795268979 1.0662794000150781 0.8742585581601069 0.9905296277109579 0.9327350037936436 1.0 22.742863772317595 2.4189929422497194 6.10009831969536 0.9512317751340553 1.1188322156581707 0.6925340036491003 0.05450184466999183 0.11852118355816388 8.971502203160805 0.019765519306164017 0.01653423631929543 262.4175897370182 -2.4189929422497194 0.16760044052411538 S(ph)QEDLNEPIKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SQEDLNEPIKR 11 1 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(1)QEDLNEPIKR;S(1)QEDLNEPIKR;S(1)QEDLNEPIKR;S(1)QEDLNEPIKR 136.39 6.131e-05 3621120000.0 4069200.0 3064700.0 2802760.0 2703050.0 2775600.0 4013750.0 3610200.0 3452160.0 5441940.0 4067110.0 True False 4047291.8793306206 3166706.6868497245 3197364.245973358 3045255.852850039 3129056.2077298956 3736288.909851207 3435560.8336967137 3709777.708913285 4100846.8052600226 3807543.5577719477 1.062966665494686 0.8316928326101093 0.8397446273324718 0.799795407890757 0.8218044416965039 0.9812859270446701 0.9023037508485112 0.9743231174180257 1.0770321450136493 1.0 21.860429110362976 1.8111364253833666 1.1985718529788572 1.0356335954419975 0.8716952177590277 0.3645086796208391 0.07811607740829309 0.47933385903008763 1.2799352775937347 0.06360734524133149 0.02597353981821468 64.73459352734027 -1.8111364253833666 -0.16393837768296982 S(ph)QEELREDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SQEELREDK 9 1 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 S(1)QEELREDK;S(1)QEELREDK;S(1)QEELREDK;S(1)QEELREDK 166.62 0.00017576 1853450000.0 3087210.0 2189060.0 2090460.0 1949630.0 1978990.0 2933000.0 2842610.0 2605510.0 4128470.0 2577030.0 True False 3070588.804381273 2261921.538785287 2384778.5973959477 2196452.958099933 2231002.646107287 2730248.6135393553 2705102.0944752702 2799946.3867116994 3111063.8871637373 2412561.739093616 1.2727503527163095 0.9375600641147018 0.9884839665458235 0.9104235230577461 0.9247442707706458 1.1316803086519527 1.1212571478032143 1.1605698380028282 1.2895271597619482 1.0 21.202134431723334 2.6226141570175683 5.981717754066543 1.1517992471351148 0.9969643602441355 0.24484234752022127 0.1164090095038485 0.3018095398253226 13.814692877586063 0.03725808475371673 0.03502580374701232 419.38622048538747 -2.6226141570175683 -0.15483488689097935 S(ph)QEEPKDTFEHDPSESIDEFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQEEPKDTFEHDPSESIDEFNK 22 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 S(0.792)QEEPKDT(0.206)FEHDPS(0.001)ES(0.001)IDEFNK;S(0.987)QEEPKDT(0.013)FEHDPSESIDEFNK 71.92699999999998 0.0095715 1026300000.0 380940.0 346140.0 297890.0 304340.0 287270.0 359350.0 349700.0 345490.0 465950.0 373560.0 True False 378889.06136641256 357661.0606539517 339830.3226937032 342869.41279531684 323852.1317173104 334508.98031891085 332783.6750162708 371272.2181626721 351122.86591011786 349719.0809791932 1.083409747919802 1.0227095978078218 0.9717237096191547 0.980413799084975 0.9260350645167634 0.9565076614701864 0.9515742580716378 1.0616298576649903 1.0040140358569916 1.0 18.41583698732422 -0.38806255828517466 8.28492890142522 0.9999999999999984 0.9948021961122783 0.0007738346214732905 0.04688774099187175 0.0 0.0 0.04838826069494477 0.01140522242240598 0.40920171170685826 0.38806255828517466 -0.005197803887720176 S(ph)QESDGVEYIFISK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQESDGVEYIFISK 14 0 S4R337;Q5T2T1-2;Q5T2T1;U5GXS2 S4R337 MPP7 MAGUK p55 subfamily member 7 1 S(0.994)QES(0.006)DGVEYIFISK 100.77 0.001732 31529000.0 54071.0 49658.0 43878.0 47612.0 46871.0 57330.0 50107.0 40970.0 67400.0 52505.0 True False 53779.88774385286 51310.83651110513 50055.641005587015 53639.674318231686 52839.74402381749 53366.91204030384 47683.132982671676 44027.38944144459 50790.17311372887 49154.08594820795 1.094108184628211 1.04387734043452 1.0183414062124765 1.0912556562388334 1.0749817233809007 1.0857065289859078 0.9700746552975034 0.8957015188490091 1.0332848660281226 1.0 15.585023725560017 2.1923693871351007 6.695131580277591 0.9577769507093721 1.0660321436709899 0.5509710326070896 0.04012177621563353 0.13106177898110616 14.050359071883413 0.015155909750882397 0.011264549453735404 155.72896138504714 -2.1923693871351007 0.10825519296161779 S(ph)QESGYYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQESGYYDR 9 0 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 S(0.989)QES(0.011)GYYDR;S(0.999)QES(0.001)GYYDR 140.01 0.00011551 789910000.0 247340.0 266330.0 224996.0 215005.0 192391.0 229560.0 227590.0 216910.0 280410.0 193370.0 True False 246008.3489220572 275194.63305011555 256673.4810997098 242224.6109550409 216890.8534592021 213691.05752611428 216580.60222177042 233096.92564666187 211306.7128014943 181028.96104761373 1.3589447097216272 1.520169101438607 1.4178586653447138 1.3380434243962305 1.1981003050785675 1.1804247027077057 1.1963864840654197 1.287622291470553 1.1672536348806475 1.0 17.465860992836177 7.9999999988343005 0.09545045924671323 0.8464166973504184 2.6415246843592524 0.7518087183932043 0.0703210602778488 72.76125149437179 0.49493030251845743 1.1278813513861001 17.098090104762054 99999999.73158777 -7.9999999988343005 1.795107987008834 S(ph)QGGEEEGPLSDK ddPTM_BT-474_Trastuzumab_2h_R1 3 SQGGEEEGPLSDK 13 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 S(1)QGGEEEGPLSDK;S(1)QGGEEEGPLSDK;S(1)QGGEEEGPLSDK 253.36 9.2626e-24 2708470000.0 1773120.0 1499200.0 1393240.0 1260990.0 1326210.0 1840760.0 1737810.0 1820160.0 2507310.0 1699150.0 True False 1763573.7189321497 1549099.9657144623 1589396.0817408294 1420631.204707783 1495094.982437476 1713512.593882951 1653745.4912211206 1955989.5817852034 1889417.0467326927 1590708.7922844975 1.108671635868305 0.9738425871712957 0.9991747637593786 0.8930806264467442 0.9398923232770308 1.0772006807242755 1.0396280571543788 1.2296339790616908 1.1877831164931232 1.0 20.601238318016215 2.191512450559841 1.9831226322670878 1.1568681550724331 0.9825470139635007 0.35790624944634697 0.08128903421033153 0.29184533735656104 2.287019634256247 0.040340946888833114 0.02513327165533329 155.42198472433856 -2.191512450559841 -0.17432114110893238 S(ph)QKGESDITNAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQKGESDITNAEK 13 1 Q8IY51 Q8IY51 TIGD4 Tigger transposable element-derived protein 4 1 S(0.659)QKGES(0.171)DIT(0.171)NAEK 54.524 0.082768 359730000.0 265790.0 364190.0 352220.0 326920.0 325010.0 308850.0 276800.0 343280.0 227520.0 325100.0 True False 264359.01617204526 376311.8439924958 401809.5144488775 368308.03848013753 366398.0970148046 287499.926454698 263410.12652131455 368897.2967405195 171450.744611804 304351.83966788725 0.8685967413915333 1.2364368962025407 1.3202138514665702 1.2101390248931636 1.2038635856928712 0.9446301582024993 0.8654790022256844 1.21207513364488 0.5633307319544817 1.0 18.215380560711605 2.735951815922227 24.08093905797502 0.9491639534305566 1.1824744546801713 0.3018318020966583 0.18687528671962841 189.7028294369229 1751072.2210329066 0.05848879169221943 0.05752586273235639 544.4422447463386 -2.735951815922227 0.23331050124961472 S(ph)QLDLFDDVGTFASGPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLDLFDDVGTFASGPPK 18 0 Q8N6H7;G5E9L0;A0A0D9SF70;Q8N6H7-2;E9PQP3;Q8N6H7-3;H0YDN9 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 S(1)QLDLFDDVGTFASGPPK;S(1)QLDLFDDVGTFASGPPK 138.28 2.4351e-06 23768000.0 65563.0 53893.0 53552.0 56969.0 48656.0 55572.0 50025.0 57761.0 91999.0 54216.0 True False 65210.01609273416 55686.79592599352 61091.65611767169 64181.269558836815 54852.05319329361 51730.43844241695 47605.09963594208 62071.41912441492 69327.07917344126 50755.88846334713 1.284777354253683 1.0971494660409147 1.2036368186479178 1.2645088383229601 1.080703241613128 1.0192007274145851 0.9379226938430925 1.2229402539025436 1.3658923382555925 1.0 15.631287586360763 4.748686308902542 22.56672751626836 1.135533748772308 1.284777688358369 0.11671603304329292 0.1254632308231249 856.6979746886012 1909128.1148163527 0.030904463347555925 0.38619682437266173 56064.28771489856 -4.748686308902542 0.14924393958606097 S(ph)QPLLIPTTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SQPLLIPTTGR 11 0 Q14451;Q14451-3;Q14451-2;J3QL76 Q14451 GRB7 Growth factor receptor-bound protein 7 1 S(1)QPLLIPTTGR;S(1)QPLLIPTTGR;S(1)QPLLIPTTGR 119.79 0.00056522 986790000.0 284487.0 259888.0 264212.0 268078.0 256579.0 312333.0 304493.0 286390.0 336100.0 322302.0 True False 282955.3536014771 268538.2149743863 301410.75302812696 302016.6473133437 289252.8147871196 290742.15486279805 289763.5103137812 307761.8760589531 253272.65850926194 301732.41042337497 0.9377691750264717 0.8899879684704328 0.9989339647179543 1.000942016436252 0.9586401884413258 0.9635761516465666 0.9603327329245154 1.0199828239436324 0.8393949398869122 1.0 18.20291014555094 4.240828325981299 24.999731866378657 0.9713007660206573 0.9138785689083901 0.16057724633500525 0.04869981424398402 91.14749453305465 1004766.9945953718 0.011341783099560989 0.028139888915296587 17411.184835893062 -4.240828325981299 -0.05742219711226715 S(ph)QPWDLTPMLSSSEPWGR ddPTM_BT-474_Trastuzumab_2h_R1 9 SQPWDLTPMLSSSEPWGR 18 0 Q9H201 Q9H201 EPN3 Epsin-3 1 S(1)QPWDLTPMLSSSEPWGR;S(0.999)QPWDLT(0.001)PMLSSSEPWGR;S(1)QPWDLTPMLSSSEPWGR;S(1)QPWDLTPMLSSSEPWGR;S(1)QPWDLTPMLSSSEPWGR;S(0.951)QPWDLT(0.049)PMLSSSEPWGR;S(0.997)QPWDLT(0.003)PMLSSSEPWGR;S(0.994)QPWDLT(0.006)PMLSSSEPWGR;S(1)QPWDLTPMLSSSEPWGR 254.62 1.617e-30 1242469000.0 942280.0 858342.0 817505.0 897579.0 707641.0 987293.0 901711.0 855250.0 1210395.0 979228.0 True False 937206.8691771497 886911.3945913049 932602.5981191586 1011212.4093691508 797754.8868331847 919043.7587477356 858091.794059469 919073.0978715029 912109.3707120456 916732.8306807306 1.0223337027007267 0.9674698722557133 1.0173112240636606 1.1030611924504363 0.8702152471629084 1.0025208304858997 0.9360325771493129 1.0025528344927217 0.9949565895166513 1.0 19.80614181565876 4.7656047748404085 21.73621280963894 0.9878206085275265 1.0223339685880206 0.03189978298779794 0.05631132908431474 5951.424881120036 4782879.268714215 0.012978572657454262 0.7991331820253106 58291.43876704497 -4.7656047748404085 0.0345133600604941 S(ph)QS(ph)IEQESQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSIEQESQEK 11 0 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 2 S(1)QS(1)IEQESQEK;S(1)QS(1)IEQESQEK 300.71 1.1720999999999999e-35 651000000.0 2553600.0 1727660.0 1390850.0 1334430.0 1439490.0 2191520.0 1868530.0 2017570.0 3010500.0 1834440.0 True False 2539851.7013316345 1785164.1187074766 1586669.5905150815 1503368.7011778096 1622800.518974314 2040025.3806831783 1778142.065422224 2168131.318412874 2268602.613633247 1717364.468656899 1.4789241000880722 1.0394788941357345 0.9238979957212984 0.875392922478215 0.9449365866078848 1.1878814415431707 1.035390039723401 1.262475937975185 1.3209791253032361 1.0 20.711764817938537 1.7507415397005301 10.701970638290312 1.2172527037913852 1.0549623068727523 0.08529311536331663 0.17877268086479556 0.2344596996055885 136.07343533685906 0.08525689548003468 0.046532044898910524 56.33023197267105 -1.7507415397005301 -0.1622903969186329 S(ph)QS(ph)T(ph)PHQEKVITESK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSTPHQEKVITESK 15 1 Q9ULI3-2;Q9ULI3 Q9ULI3-2 HEG1 Protein HEG homolog 1 3 S(0.999)QS(0.999)T(0.999)PHQEKVIT(0.002)ESK;S(0.999)QS(0.999)T(0.999)PHQEKVIT(0.002)ESK 82.87700000000002 0.0081391 1107000000.0 461600.0 480650.0 458320.0 410860.0 380420.0 613910.0 710940.0 546830.0 731800.0 654260.0 True False 459114.7968885813 496648.14469093975 522847.4722111461 462874.8338735754 428864.2320740041 571471.8466886961 676549.1161454598 587637.2313464766 551457.6956176076 612504.5666598327 0.7495695899742741 0.8108480682834871 0.8536221616475236 0.7557083800987278 0.7001812809539146 0.9330083036035142 1.1045617501839715 0.9594005715762006 0.9003323822136843 1.0 19.224361074915993 2.5677409885683136 5.477538912942098 0.992307683779106 0.7806121689166272 0.7457178850747364 0.06062112346941446 0.11749028628340684 5.534844699414476 0.0206522292855866 0.019291092895322094 369.60768154302696 -2.5677409885683136 -0.21169551486247884 S(ph)QSDRTEYNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSDRTEYNQK 11 1 Q9NXL2-1;Q9NXL2 Q9NXL2-1 ARHGEF38 Rho guanine nucleotide exchange factor 38 1 S(0.589)QS(0.411)DRTEYNQK 58.07899999999999 0.065768 341110000.0 90359.0 60828.0 71761.0 57551.0 63804.0 77277.0 88584.0 73436.0 101870.0 99244.0 True False 89872.51718382875 62852.62320869751 81864.32504220639 64836.95069916302 71929.06120406334 71935.02288049113 84298.85349625765 78916.16722045219 76765.50348806463 92910.16295293682 0.9673055597734042 0.6764881387683626 0.8811127054386327 0.6978456246170384 0.7741786142437254 0.7742427802750648 0.9073157426164328 0.8493814316139643 0.8262336546212905 1.0 16.503548793594103 0.5190297746764592 0.5137079315638897 1.0071403386786957 0.7925684799369312 0.2992538023360204 0.0852434023545079 2.088320939701124 1.0142463738549716 0.12339719855564261 0.04027692627503356 3.3039219152814705 -0.5190297746764592 -0.21457185874176443 S(ph)QSFTHSPSGDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(0.5)QS(0.5)FTHSPSGDPK;S(0.529)QS(0.418)FT(0.051)HS(0.001)PSGDPK 161.91 2.6635e-05 1568410000.0 2326380.0 1649040.0 1565250.0 1673440.0 1558620.0 2159150.0 1827010.0 1867630.0 3118440.0 2131590.0 True False 2313855.028565117 1703927.299534268 1785623.5946031075 1885297.3324183326 1757101.0183354844 2009893.042592393 1738630.54644403 2007002.0342329796 2349942.2469551447 1995550.1012539864 1.1595073594549747 0.8538634527208988 0.8948026879811423 0.9447506886615515 0.8805095984467327 1.007187462409184 0.8712537687485219 1.0057387348840787 1.177591204289214 1.0 20.928355069633295 1.4715657857276718 5.906569108574926 1.0911698245088983 0.9393237285820388 0.27535897544602095 0.0929393891193368 0.1695739444849697 13.860167696742808 0.051750583047075915 0.021872527646482245 29.61868587082096 -1.4715657857276718 -0.1518460959268595 S(ph)QSKSPTGTPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 S(0.997)QS(0.003)KSPTGTPAR 94.461 0.0039951 17295000.0 22142.0 22294.0 23254.0 20927.0 21651.0 23624.0 27518.0 26447.0 33810.0 28326.0 True False 22022.789932207455 23036.042312992413 26527.961072608625 23576.356054306347 24408.12651446892 21990.92848491432 26186.849211031564 28420.60943514484 25477.9785307889 26518.21042889131 0.8304779838466724 0.8686876655860188 1.0003676961438805 0.8890628618219333 0.9204288720733781 0.8292764907301374 0.9875043899078977 1.0717393434732265 0.9607729224077244 1.0 14.694695798571672 2.06636636707999 6.88641424807459 1.0214941677884686 0.8955596088394858 0.533951857731425 0.05262896328395232 0.1567530846137417 13.150957818960537 0.019991963294351343 0.014677155814130984 116.51084904301418 -2.06636636707999 -0.12593455894898276 S(ph)QSLPHSATVTLGGTSDPSTLSSSALSER ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7;F8WDP1 A0A0A0MRY0 TBC1D22A TBC1 domain family member 22A 1 S(0.5)QS(0.5)LPHS(0.001)ATVTLGGTSDPSTLSSSALSER;S(0.594)QS(0.405)LPHS(0.001)AT(0.001)VTLGGTSDPSTLSSSALSER 189.29 2.9291e-18 1770030000.0 394480.0 348330.0 322950.0 382660.0 350270.0 362550.0 334340.0 323290.0 415600.0 416500.0 True False 392356.16351084807 359923.9534800685 368418.55286827876 431104.71676498634 394874.80828705546 337487.7718509008 318166.6968971687 347415.5414333562 313180.94875468384 389918.6134164102 1.0062514330184968 0.9230745624746332 0.9448601328370784 1.1056274359095337 1.0127108445201418 0.8655338838376603 0.8159823254125735 0.890995016599366 0.8031956874554869 1.0 18.572813500274158 2.734317478374735 24.148925208308075 0.8654767556354934 0.9972853002295932 0.4528907377228705 0.06737084599468875 198.14976656972462 1127722.9489465682 0.02130628826998774 0.02075693632872196 542.3972492755728 -2.734317478374735 0.13180854459409974 S(ph)QSTTFNPDDMSEPEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSTTFNPDDMSEPEFK 17 0 F5GZP6;Q86W92-3;Q86W92-4;Q86W92;Q86W92-2 F5GZP6;Q86W92-2 PPFIBP1 Liprin-beta-1 1 S(0.489)QS(0.489)T(0.011)T(0.011)FNPDDMSEPEFK 143.14 5.876300000000001e-07 73595000.0 111030.0 65129.0 48871.0 49613.0 45809.0 56729.0 70061.0 71332.0 86178.0 75762.0 True False 110432.22681659274 67296.77939368814 55751.612005653034 55894.00071306453 51642.50461878467 52807.45775570196 66671.88177098923 76655.15605655653 64940.586626037475 70926.80429688847 1.556988615394834 0.948820126055509 0.7860443249675474 0.7880518693483076 0.7281098469150993 0.7445345702403033 0.9400096681631277 1.0807642726392983 0.9156000650220525 1.0 16.11404332602989 4.733160057853239 4.0138623506353674 0.8767177977138 1.6142340692771606 0.7785515357962822 0.10873084259347816 0.11916711099378144 4.065078820415395 0.030987319711969618 0.25400091653208434 54095.365296439384 -4.733160057853239 0.7375162715633606 S(ph)QSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR 36 0 A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H0Y764 A0A494C1V1 NBEAL2 Neurobeachin-like protein 2 1 S(0.478)QS(0.478)VPAS(0.022)T(0.022)GLGWGSGLVAPLQEGSIDSTLAGTQDTR 64.612 0.004220300000000001 87014000.0 14094.0 6947.5 7067.7 9948.0 8313.0 8597.1 6075.8 5656.7 9876.9 9331.1 True False 14018.119469990608 7178.743337647564 8062.770726450333 11207.41578000858 9371.611274988683 8002.802712396576 5781.890342190043 6078.831678140581 7442.870338679354 8735.581209243373 1.60471514535949 0.8217819931719628 0.9229804558303322 1.282961661228641 1.0728091297545614 0.9161156562689357 0.6618781514013121 0.6958703184750193 0.8520177605130425 1.0 13.092687978622447 2.5962617099733225 2.9385996245049344 0.7655916844785451 1.1209868024203715 0.3473424835565615 0.21702272093272412 0.2898536610628465 4.821091647500809 0.07475490736756503 0.06874002583912213 394.69507742189415 -2.5962617099733225 0.35539511794182643 S(ph)QTNDNYEGDLTSGVYLLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQTNDNYEGDLTSGVYLLSR 20 0 A0A1B0GV68 A0A1B0GV68 1 S(0.857)QT(0.143)NDNYEGDLTSGVYLLSR;S(0.5)QT(0.5)NDNYEGDLTSGVYLLSR 133.16 1.1815e-05 208804000.0 46140.0 54756.0 66993.0 43481.0 54223.0 80808.0 60802.0 49119.0 67795.0 60544.0 True False 45891.587366635904 56578.520359299044 76425.03208640522 48985.69014179263 61127.977645099425 75221.93316157116 57860.77497380411 52784.50920122813 51087.83065645767 56680.030085673745 0.809660603518898 0.9982090742326484 1.348359059987905 0.8642495437590476 1.0784746859291088 1.3271329081489673 1.0208317618453207 0.9312717216529807 0.9013373948326548 1.0 15.790552903585917 1.9959659320679035 24.993798444777713 0.9464378331116782 1.079813095910374 0.10712984985205376 0.16264317151248586 367.3141217730911 2275767.775587692 0.06270672206389892 0.045243045193332 99.07542228104214 -1.9959659320679035 0.13337526279869583 S(ph)QTPPRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQTPPRR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.597)QT(0.403)PPRR 57.96 0.068869 67522000.0 43471.0 41340.0 35705.0 36477.0 39125.0 34658.0 42530.0 34060.0 47932.0 36742.0 True False 43236.95696608216 42715.97690944226 40731.953646576534 41094.98445992894 44107.3368379565 32262.17403615646 40472.66141962251 36601.730153175544 36119.80085589394 34397.0941035912 1.256994466912484 1.2418484183808578 1.1841684510879642 1.1947225639516583 1.2822983448869745 0.9379331271122742 1.1766302495709078 1.0640936714870393 1.0500829153507734 1.0 15.069999069493717 2.7540131372098373 24.993890616713962 1.0617444080537615 1.227824234973312 0.6836633948263314 0.06284778909470681 501.60587596694745 811328.2489404731 0.018525540767903817 0.019587906820111273 567.5617736334606 -2.7540131372098373 0.16607982691955048 S(ph)QVNGEAGSYEMTNQHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQVNGEAGSYEMTNQHVK 18 0 Q05D32-2;Q05D32;H0YMH7 Q05D32-2 CTDSPL2 CTD small phosphatase-like protein 2 1 S(0.982)QVNGEAGS(0.009)Y(0.009)EMTNQHVK 52.731 0.083694 167510000.0 281500.0 178010.0 101650.0 130070.0 113480.0 135870.0 129850.0 103830.0 286830.0 117940.0 True False 279984.4352775902 183934.95524068284 115961.43644236127 146536.84866362248 127931.0053513432 126477.62670357725 123568.6594248291 111578.32183805683 216144.58982508682 110412.96822648602 2.5357930302468503 1.6658818089500493 1.0502519613864005 1.3271706305643092 1.1586592354706295 1.1454961200222278 1.1191498735126593 1.0105544994423152 1.957601478312923 1.0 16.7525501039558 4.646820789778908 2.4906846006297307 1.205019672512805 2.694133410935301 0.6917024818151821 0.26702294179203984 0.21369185060804416 1.9028666953552769 0.06327975982032852 0.6157223227351276 44342.56280143994 -4.646820789778908 1.4891137384224957 S(ph)RAS(ph)PATHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRASPATHR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)RAS(0.966)PAT(0.034)HR 51.463 0.087933 133840000.0 9636.2 8922.2 8692.4 13325.0 8632.4 6909.1 8183.2 7063.5 9326.8 7616.6 True False 9584.319769882472 9219.170033416212 9916.214364304775 15011.943633756962 9731.684971756566 6431.4901792719875 7787.347353140251 7590.614237726234 7028.335112717004 7130.502067100671 1.3441297232215157 1.2929201824304095 1.3906754771248246 2.105313692148042 1.3647965991984572 0.9019687700458225 1.0921176769683847 1.0645273174729823 0.9856718428208507 1.0 12.799787946775188 2.9104485621803002 5.47884467379688 1.0283813626318743 1.5315863421414524 0.5697867169677286 0.21633745379450414 0.17910875086697267 8.506204503079967 0.069969910951172 0.07491861212571908 813.67048397445 -2.9104485621803002 0.5032049795095781 S(ph)RAS(ph)PVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)RAS(0.999)PVS(0.001)R;S(1)RAS(0.994)PVS(0.006)R;S(1)RAS(0.998)PVS(0.002)R 86.699 0.0090177 666450000.0 67123.0 84110.0 67254.0 93800.0 73581.0 86067.0 83178.0 67803.0 77656.0 83713.0 True False 66761.61722606645 86909.55050443132 76722.7786177527 105675.07038246944 82951.10420124419 80117.3908699254 79154.36236918322 72862.80415665774 58518.71933708789 78370.3646696949 0.8518732496326198 1.1089593734918328 0.9789769250291711 1.3484060056100902 1.0584498943045064 1.02229192383618 1.0100037520916563 0.9297239391924524 0.7466944882000344 1.0 16.258020589670732 1.8305042196910484 1.8289122065784267 0.8699700542792368 1.0738303436043248 0.2522435645981773 0.13070045294042562 0.4329554998047491 2.7653460132219774 0.08745867849399463 0.038334273626850005 67.68683694746947 -1.8305042196910484 0.20386028932508804 S(ph)RASPVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.676)RAS(0.323)PVS(0.001)R 64.439 0.040564 1116300000.0 162200.0 225450.0 194410.0 184960.0 214510.0 194340.0 230230.0 183690.0 213930.0 203850.0 True False 161326.733222114 232953.96696259733 221781.2381579874 208375.91703562377 241826.5769996181 180905.73322715238 219092.89533599108 197397.8805589199 161209.81801513367 190840.11847523475 0.8453502047214948 1.220676075994093 1.1621311070752027 1.0918873803920042 1.2671684493373432 0.9479439369066859 1.1480442219722404 1.034362597005703 0.8447375703974623 1.0 17.542004961509797 1.455130276275949 4.766135931729752 0.9233784686160857 1.1045038325954253 0.24178932741182013 0.12222191959443347 0.23758479593901172 10.75108632739742 0.07571819368125049 0.02931709159264063 28.518736220420134 -1.455130276275949 0.18112536397933954 S(ph)RDKEER ddPTM_BT-474_Trastuzumab_2h_R1 8 SRDKEER 7 2 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 S(1)RDKEER;S(1)RDKEER;S(1)RDKEER;S(1)RDKEER;S(1)RDKEER;S(1)RDKEER;S(1)RDKEER;S(1)RDKEER 94.616 0.011081 7072088000.0 11975953.0 8238296.0 6690197.0 6265360.0 7070109.0 6269763.0 8741669.0 9236869.0 14224790.0 10361117.0 True False 11911475.799701469 8512502.702204902 7632118.585365229 7058553.933598172 7970445.473330803 5836349.041244566 8318801.074051486 9926171.068650402 10719281.106920457 9699861.64246145 1.2280047116918253 0.8775901158157918 0.7868275720506558 0.7276963521519862 0.8217071301759529 0.6016940505311709 0.8576205909613878 1.0233312014676863 1.1050962892085454 1.0 23.209532738360195 1.7178163507289137 3.961463760285776 1.0540091043050488 0.8264351574146543 0.2637930426935775 0.1522083477340261 0.24648389181904856 8.80052269895011 0.08609251684424636 0.04175794552643331 52.217533102902614 -1.7178163507289137 -0.22757394689039445 S(ph)RDREQDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRDREQDRK 9 3 O95232;J3KPP4;H0YA81;H0YBV7;H0YAR4;H0YAX1;H0YAY6 O95232 LUC7L3 Luc7-like protein 3 1 S(1)RDREQDRK 105.65 0.01693 404280000.0 107370.0 108230.0 82371.0 101060.0 95542.0 79917.0 95344.0 102930.0 216190.0 124110.0 True False 106791.93184992849 111832.37012358334 93968.12081843309 113854.18563808466 107708.70737819902 74392.52589438266 90731.84647054985 110611.15926794962 162912.87129758214 116189.19354408332 0.9191210352054865 0.9625023353067086 0.8087509513763916 0.9799033986313647 0.9270114034945365 0.6402706105895933 0.7808974630340755 0.9519917979806157 1.4021344526827393 1.0 16.82611636809018 1.4172697100796074 6.422870368883509 1.2003138980374457 0.8622003615739712 0.513770098659867 0.130884471029408 0.15475855795675053 11.01372726870114 0.08505167311136844 0.03209664809689947 26.137840898646893 -1.4172697100796074 -0.33811353646347453 S(ph)RECDITK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRECDITK 8 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(1)RECDITK;S(1)RECDITK;S(1)RECDITK;S(1)RECDITK 140.78 0.00039005 2635610000.0 3452370.0 2755610.0 2458940.0 2394040.0 2367960.0 3184600.0 3067070.0 2896050.0 4935500.0 2965650.0 True False 3433782.8235143656 2847328.813048581 2805137.3785103713 2697125.2185335504 2669505.6700014696 2964456.0977420444 2918704.106754802 3112167.956843924 3719212.157311702 2776379.6779792984 1.2367843097070705 1.0255545506372965 1.01035798553028 0.9714540269566334 0.9615059824758501 1.0677416065441134 1.0512625956400496 1.1209446537618437 1.3395906139244669 1.0 21.404773443465963 1.5884142040563325 3.961541876743369 1.1857604774745447 1.0391888245180827 0.17837767991469533 0.10517626586250346 0.23483989074059486 8.417712305258132 0.060861236452754236 0.0263876566185566 38.76271642457076 -1.5884142040563325 -0.14657165295646202 S(ph)REDLSALTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SREDLSALTR 10 1 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 S(0.999)REDLS(0.001)ALTR;S(1)REDLSALTR;S(1)REDLSALTR 168.0 3.0710000000000008e-06 3952700000.0 1132590.0 1429500.0 1165570.0 1354770.0 1248720.0 1314370.0 1254430.0 1148400.0 1273320.0 1148190.0 True False 1126492.2612825776 1477080.043349001 1329672.1246839452 1526283.7430923025 1407737.0902566924 1223510.6955941748 1193748.428512039 1234099.4394570393 959527.3476138462 1074911.5311850861 1.0479860235945408 1.3741410343979896 1.2370061033934452 1.419915684976958 1.3096306527707142 1.1382431577836538 1.1105550493033929 1.1480939627621718 0.8926570417901933 1.0 20.035786495396827 1.8855532083812665 0.9846043050912667 0.9703466176434983 1.282479252434188 0.5326828298018358 0.10890578526843761 0.41258123691753595 0.7362268049139885 0.08951720125778256 0.03955091509086165 76.83395844397826 -1.8855532083812665 0.31213263479068964 S(ph)REDLSAQPVQTK ddPTM_BT-474_Trastuzumab_2h_R1 5 SREDLSAQPVQTK 13 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.94)REDLS(0.06)AQPVQTK;S(1)REDLSAQPVQTK;S(1)REDLSAQPVQTK;S(0.999)REDLS(0.001)AQPVQTK;S(1)REDLSAQPVQTK 238.05 5.5609e-17 19374400000.0 11211600.0 8733780.0 8250060.0 8023110.0 7213320.0 10285320.0 9689630.0 9932250.0 13954600.0 10409500.0 True False 11151237.991325859 9024478.587618493 9411596.73719298 9038834.903372008 8131893.545302704 9574320.037439004 9220905.578918818 10673444.929943575 10515675.812059956 9745156.79797869 1.1442851277301986 0.9260475510758659 0.9657717091986763 0.9275207254999546 0.8344548696219435 0.982469572929281 0.9462039216066169 1.0952563566917084 1.0790668667579657 1.0 23.216253967721286 1.754496932210687 10.959565049874088 1.0644954062310399 0.9544710468501327 0.24965685356438883 0.07633845839815148 0.1772542671999659 98.79074547000177 0.035447398286877325 0.019395780811485634 56.81943779081795 -1.754496932210687 -0.11002435938090716 S(ph)REDLTAVVSVSTK ddPTM_BT-474_Trastuzumab_2h_R1 6 SREDLTAVVSVSTK 14 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.736)REDLT(0.264)AVVSVSTK;S(0.674)REDLT(0.326)AVVSVSTK;S(0.954)REDLT(0.046)AVVSVSTK;S(0.999)REDLT(0.001)AVVSVSTK;S(0.984)REDLT(0.016)AVVSVSTK;S(0.999)REDLT(0.001)AVVSVSTK 209.33 1.7853e-08 3140420000.0 6485770.0 4813210.0 4551950.0 4393260.0 4004450.0 5608020.0 5210370.0 5459800.0 8045380.0 6126960.0 True False 6450851.334956793 4973414.785203114 5192824.993741326 4949446.265548908 4514392.971265298 5220350.777259112 4958324.4975536885 5867238.000302632 6062703.901568721 5735932.167245635 1.1246387068162382 0.8670630405295261 0.9053149239445929 0.8628843789004581 0.7870373706725836 0.9101137574585192 0.8644322061316584 1.022891803673482 1.0569692466359832 1.0 22.451596532248757 1.6687084963760803 5.56832146283288 1.032142279438724 0.8962175059380529 0.3136860919415949 0.08313972355150553 0.16106780900462067 10.878939583665884 0.043381134336472255 0.02131810443327041 46.63462580828854 -1.6687084963760803 -0.13592477350067111 S(ph)REDMIDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SREDMIDIK 9 1 P20340-2;P20340;P20340-4;P20340-3;F5H3K7 P20340-2 RAB6A Ras-related protein Rab-6A 1 S(1)REDMIDIK;S(1)REDMIDIK 131.53 0.00020011 504340000.0 1621560.0 1221270.0 1071430.0 952690.0 1131000.0 1534770.0 1255120.0 1290100.0 2176500.0 1325790.0 True False 1612829.7011322519 1261919.2336766964 1222278.0309634919 1073300.4563184942 1275026.1460377963 1428674.9623599688 1194405.0505759832 1386373.8129950603 1640130.7386057985 1241176.947134075 1.2994357531827652 1.016711788428327 0.9847733909220426 0.8647441114635476 1.0272718559443763 1.1510646936029822 0.9623164959145513 1.1169832119394825 1.3214318412801036 1.0 20.243277375811818 1.5159047555242282 6.405513996684997 1.1791723075666294 1.037328947373204 0.11363001898407044 0.13146679963072527 0.2246179545089344 19.81724978235891 0.07223776283587896 0.03274166330175672 32.80233469127102 -1.5159047555242282 -0.14184336019342547 S(ph)REEENEHHGPSMPALIAPEDSPHCDLFPGASYLVTQIPGTQTESR ddPTM_BT-474_Trastuzumab_2h_R1 1 SREEENEHHGPSMPALIAPEDSPHCDLFPGASYLVTQIPGTQTESR 46 1 A0A2R8YF49;A0A5F9ZH52;A5YM69 A0A2R8YF49;A0A5F9ZH52;A5YM69 ARHGEF35 Rho guanine nucleotide exchange factor 35 1 S(0.489)REEENEHHGPS(0.489)MPALIAPEDS(0.022)PHCDLFPGASYLVTQIPGTQTESR 89.51 1.4631e-05 84460000.0 14450.0 13790.0 7928.3 14864.0 15721.0 16914.0 8956.3 6572.1 20143.0 11885.0 True False 14372.202805545925 14248.991813768967 9044.535725981037 16745.78087595975 17722.976164332635 15744.7749912733 8523.04955261145 7062.543474447592 15179.027552371506 11126.489124739574 1.2917104977516725 1.280636834676498 0.8128831677793721 1.505037275300595 1.592863298174253 1.4150712605528946 0.7660142797120597 0.6347504046666561 1.364224364235541 1.0 13.44171081307632 2.239194949500582 24.999973493250142 0.8760607031292339 1.3130012772879869 0.31378047459488745 0.2648100301482422 18.67292351429936 735967.5719753648 0.1000714835723859 0.07909262414327832 173.45824559475943 -2.239194949500582 0.436940574158753 S(ph)RENLSAVMLYNPGLEFER ddPTM_BT-474_Trastuzumab_2h_R1 7 SRENLSAVMLYNPGLEFER 19 1 Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2;A0A1B0GTU3 Q96L93-5 KIF16B Kinesin-like protein KIF16B 1 S(0.5)RENLS(0.5)AVMLYNPGLEFER;S(0.968)RENLS(0.032)AVMLYNPGLEFER;S(0.997)RENLS(0.003)AVMLYNPGLEFER;S(0.624)RENLS(0.376)AVMLYNPGLEFER;S(0.974)RENLS(0.026)AVMLYNPGLEFER;S(0.978)RENLS(0.022)AVMLYNPGLEFER;S(0.8)RENLS(0.2)AVMLYNPGLEFER 203.74 2.9769e-16 3261845000.0 760342.0 676513.0 632786.0 668899.0 562682.0 762621.0 685239.0 671748.0 951270.0 731383.0 True False 756248.4031539386 699030.3262442555 721876.7685254889 753581.5448162406 634336.2174224926 709902.8052867355 652091.371702815 721877.2468272278 716842.2548649377 684705.5107715114 1.1044870988431423 1.0209211336076487 1.0542879488615386 1.1005922005317603 0.9264365591387401 1.0368001923729697 0.9523676404591116 1.0542886474125672 1.0469351328240595 1.0 19.385124098274392 7.999999999280159 0.5533833368042063 1.0134191267970305 4.753029607669719 0.21954321557421874 0.04820853175797828 221.54367454283795 2.0022034551824057 0.022022894724975955 986.0309948247117 99999999.83425047 -7.999999999280159 3.739610480872688 S(ph)REPTGVEENKTDSLFVLPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SREPTGVEENKTDSLFVLPSR 21 2 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 S(0.983)REPT(0.017)GVEENKTDSLFVLPSR;S(0.959)REPT(0.041)GVEENKTDSLFVLPSR 206.4 2.2088999999999995e-22 367770000.0 151074.0 107251.0 93362.0 83871.0 86521.0 131397.0 114076.0 115256.0 179951.0 120289.0 True False 150260.63436989923 110820.78470040148 106506.5580829486 94489.06000051265 97538.93649985516 122313.83466526764 108557.70806736092 123856.98797810929 135604.48726986066 112612.05303540599 1.3343210635069078 0.9840934581448282 0.9457829354151125 0.8390670221668426 0.8661500600578542 1.0861522489676247 0.9639972377843927 1.0998555184778296 1.2041738305510308 1.0 16.781001723913544 -0.17713380753853095 8.243645542667084 1.0000000026750677 1.024657235878963 7.070794928842883e-05 0.14445372102000115 0.0 0.0 0.1408902556559845 0.03320815172581767 0.66506821495762 0.17713380753853095 0.024657233203895235 S(ph)RERPSQPEGLRK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRERPSQPEGLRK 13 3 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 S(0.963)RERPS(0.037)QPEGLRK;S(0.997)RERPS(0.003)QPEGLRK;S(0.999)RERPS(0.001)QPEGLRK;S(1)RERPSQPEGLRK 156.67 0.00026134 7324800000.0 1907640.0 1794020.0 1657900.0 1610580.0 1728310.0 2238540.0 2272580.0 2070890.0 3454690.0 2347740.0 True False 1897369.4781987283 1853732.871192009 1891317.9092748684 1814479.2628635135 1948400.0340040557 2083794.998756353 2162646.623301333 2225430.3275663434 2603327.9399743043 2197905.223198663 0.8632626458011879 0.8434089202873944 0.8605093110076827 0.8255493656923293 0.8864804603214435 0.9480822816025513 0.9839580890362427 1.0125233354364673 1.1844586893449482 1.0 21.067697745889152 2.2255807114082966 1.0572575441782124 1.0783642050644877 0.8479329454540433 0.7874818385086 0.047932831812171624 0.2221399644382355 0.4736005799477744 0.03277020820664839 0.018285732829797247 168.10503112829588 -2.2255807114082966 -0.23043125961044442 S(ph)RESLNVDVVK ddPTM_BT-474_Trastuzumab_2h_R1 6 SRESLNVDVVK 11 1 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;H0YG16;G5E9S8;H0YJU9;H0YJT3;H0YJL0;H0YGB8 Q07866-6 KLC1 Kinesin light chain 1 1 S(0.998)RES(0.002)LNVDVVK;S(0.999)RES(0.001)LNVDVVK;S(0.994)RES(0.006)LNVDVVK;S(0.999)RES(0.001)LNVDVVK;S(0.998)RES(0.002)LNVDVVK;S(0.998)RES(0.002)LNVDVVK 166.62 1.224e-05 11123710000.0 11719270.0 8995460.0 8774540.0 8265210.0 8217020.0 11157770.0 11002340.0 10163330.0 15916700.0 11934130.0 True False 11656174.752453309 9294868.448229589 10009918.962331088 9311584.738548925 9263408.790906727 10386459.622465396 10470114.781179622 10921769.292944035 11994242.557852942 11172483.606077269 1.0432930728233905 0.8319429032926616 0.8959439382740464 0.8334391051139151 0.8291270873620167 0.9296464410845665 0.9371340473916119 0.9775596615781241 1.0735520391659987 1.0 23.413446592010168 1.7922407386885637 1.4928133843947102 1.033789935801918 0.8844080520264133 0.4477177715880365 0.06247079843993141 0.33285025840234184 1.4143802775298504 0.04612380118588263 0.01874966774469573 61.97845396545243 -1.7922407386885637 -0.14938188377550476 S(ph)RGQNRPTNVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRGQNRPTNVK 11 2 Q9BX40;Q9BX40-2;Q5TBQ1;Q5TBQ0;Q5TBP9;Q9BX40-3 Q9BX40 LSM14B Protein LSM14 homolog B 1 S(1)RGQNRPTNVK;S(1)RGQNRPTNVK;S(1)RGQNRPTNVK 105.58 0.0019266 493400000.0 289419.0 170543.0 171729.0 175208.0 158013.0 209421.0 225302.0 223233.0 334241.0 244296.0 True False 287860.8002614739 176219.42065957937 195906.95050477382 197389.3148355191 178135.01893357257 194944.21919400775 214403.28152277914 239891.78001420532 251871.78414993838 228704.82012767164 1.2586564642615716 0.7705103047727943 0.8565930110061134 0.8630745723912987 0.7788861591729064 0.8523835181312862 0.9374672619627831 1.0489144036417277 1.1012963522558643 1.0 17.80312724639981 1.837089721131291 3.0173308802054173 1.0582794960469717 0.8828143508945502 0.20909541704967582 0.1312484166824017 0.34852089633404143 5.662738829676369 0.06911873802206829 0.03521111336675123 68.72103965168155 -1.837089721131291 -0.1754651451524215 S(ph)RGSDSPAADVEIEYVTEEPEIYEPNFIFFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGSDSPAADVEIEYVTEEPEIYEPNFIFFK 31 1 Q13435;E9PPJ0;H0YCG1 Q13435 SF3B2 Splicing factor 3B subunit 2 1 S(0.332)RGS(0.332)DS(0.332)PAADVEIEY(0.003)VTEEPEIYEPNFIFFK 138.51 2.4745e-07 14723000.0 6714.2 8036.5 4820.7 5022.0 6282.6 6609.6 8329.5 6425.4 11590.0 9564.0 True False 6678.051493217747 8303.99004433316 5499.412657724453 5657.784685082736 7082.651870112346 6152.693909324822 7926.570263219976 6904.8959755200885 8733.799798043281 8953.61733184765 0.7458495539522547 0.9274452700581929 0.6142112683510906 0.631899317939156 0.7910380360929256 0.6871740974946452 0.8852924990467809 0.7711850662814967 0.9754493043808689 1.0 13.128254944958151 1.3085516470019558 1.0928651563097878 1.0096201693623084 0.7389128335674833 0.48712226896351374 0.09434783103104477 0.39646427310032906 0.9593225695953282 0.08728005411398918 0.029501740925431123 20.349401798379375 -1.3085516470019558 -0.2707073357948251 S(ph)RGSPSSYNSSSSSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGSPSSYNSSSSSPR 16 1 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 S(0.492)RGS(0.492)PS(0.012)S(0.003)YNSSSSSPR 68.411 0.029719 271200000.0 28787.0 31556.0 37357.0 28976.0 29742.0 28248.0 42723.0 34031.0 34421.0 38775.0 True False 28632.01399053637 32606.322383995175 42616.5408871351 32644.35862902379 33529.467405354706 26295.282248639498 40656.32527229094 36570.56602591652 25938.405767769433 36300.346303052334 0.7887531912644269 0.8982372264931658 1.1739981908533932 0.8992850469384881 0.9236679762070303 0.7243810301178434 1.1199982758531515 1.0074439984844294 0.7145498158949626 1.0 15.147695691057338 S(ph)RKSPHKDLGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRKSPHKDLGHR 12 3 O94888;C9JAT7 O94888 UBXN7 UBX domain-containing protein 7 1 S(0.5)RKS(0.5)PHKDLGHR;S(0.5)RKS(0.5)PHKDLGHR 98.507 0.0030827 718470000.0 797970.0 946920.0 667280.0 861170.0 734460.0 946210.0 1099830.0 410280.0 1647760.0 805770.0 True False 793673.8181828007 978437.6597747728 761227.2238982656 970194.0337022503 827989.1275145188 880800.7298387561 1046627.0211413916 440897.17695962597 1241691.6268527876 754345.0687455954 1.0521362849267448 1.2970690739740929 1.0091233514180913 1.2861408841918875 1.0976264866308287 1.1676363594494554 1.387464523207971 0.5844767802257875 1.6460525537969029 1.0 19.524865097515438 S(ph)RLTPVSPESSSTEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 1 S(0.547)RLT(0.449)PVS(0.005)PESSSTEEK 195.56 2.9168000000000003e-11 1983400000.0 1185500.0 986170.0 851390.0 915400.0 1006300.0 1256400.0 1115300.0 1161100.0 1965100.0 1351500.0 True False 1179117.3997214313 1018994.0722976457 971258.3115854586 1031289.5461419227 1134446.3401926048 1169548.0252474737 1061348.6781402538 1247747.1779463352 1480827.4359909291 1265246.1129226375 0.9319273046393682 0.805372221175084 0.7676437822376818 0.8150900726813615 0.8966210831283302 0.924364053208504 0.8388476102002055 0.9861695406153979 1.1703868685044307 1.0 20.270986611443305 1.5585980317308938 3.4863662982965735 1.0857645961267375 0.852051540840712 0.6869249371101236 0.0632342962556587 0.10712808392822576 2.947583640383465 0.04162843124628374 0.01683974835231458 36.190787367533595 -1.5585980317308938 -0.23371305528602548 S(ph)RNHIMGRY(ph)FS(ph)NQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRNHIMGRYFSNQSK 15 2 A4D0V7 A4D0V7 CPED1 Cadherin-like and PC-esterase domain-containing protein 1 3 S(0.999)RNHIMGRY(0.977)FS(0.981)NQS(0.043)K 50.053 0.055783000000000006 234290000.0 388850.0 463530.0 454090.0 398250.0 421050.0 506340.0 514370.0 472900.0 461130.0 544880.0 True False 386756.47480529646 478958.3158401974 518021.9249789645 448668.40916650783 474668.2217411267 471337.9075961524 489487.95801578235 508190.19933754264 347490.69032542675 510105.2919047622 0.7581894972332589 0.9389401040160547 1.0155196058536093 0.8795603893681527 0.9305298911302968 0.9240012112717941 0.9595821995651259 0.996245691629529 0.6812136549845949 1.0 18.9604355419726 4.74023287332696 23.659791356726256 0.9310699128376296 0.7581893708635252 0.2314692014057793 0.09062975256140075 95.65049558893756 1353037.7157093915 0.020331055477391842 0.1294938770502533 54983.562254409466 -4.74023287332696 -0.1728805419741044 S(ph)RPTS(ph)FADELAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRPTSFADELAAR 13 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 2 S(0.997)RPT(0.007)S(0.996)FADELAAR;S(0.973)RPT(0.068)S(0.959)FADELAAR 112.82 0.010413 649620000.0 1037200.0 896210.0 872010.0 1000720.0 991950.0 961040.0 874630.0 870820.0 1124870.0 967770.0 True False 1031615.8304437543 926039.8080796155 994781.4283532044 1127411.0493938662 1118268.9527517185 894605.5668448197 832320.8054889367 935805.0103343602 847660.8609857588 906006.0900504186 1.1386411656309567 1.0221121229197057 1.0979853659679544 1.2443746921514915 1.2342841455839304 0.98741672563706 0.9186702105309453 1.0328904194035642 0.9356017253025165 1.0 19.789161222341885 2.6562797721379643 8.03797260138441 0.976182651360964 1.1429760075484992 0.6278444017134854 0.06639968703224364 0.23839470642872054 21.17017475898609 0.02358601423545476 0.022224142426447914 453.18943013632804 -2.6562797721379643 0.1667933561875351 S(ph)RPTSEGSDIES(ph)TEPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 S(0.607)RPT(0.355)S(0.038)EGS(0.044)DIES(0.955)T(0.001)EPQK 218.11 5.685399999999998e-14 627950000.0 1341700.0 1155900.0 999490.0 1006200.0 1081500.0 1388700.0 1263600.0 1306500.0 1763400.0 1412300.0 True False 1334476.4362768845 1194373.4327436953 1140209.504277183 1133584.816831989 1219222.614447283 1292702.437648177 1202474.8405792373 1403997.6642725735 1328833.6983493986 1322165.8048691368 1.009310958854337 0.903346182714134 0.8623801191031686 0.8573696374973085 0.9221404834077958 0.9777158302593705 0.90947355933037 1.0618922824218224 1.0050431598334384 1.0 20.33447167723116 1.752825623972841 16.931474650608536 1.0249154241646812 0.9172366562461215 0.5046592599672628 0.046248480270779345 0.37001557275272345 442.4374332390937 0.022419034707873348 0.012400763825396375 56.601198074429036 -1.752825623972841 -0.10767876791855968 S(ph)RPTSFADELAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRPTSFADELAAR 13 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 S(1)RPTSFADELAAR;S(1)RPTSFADELAAR;S(1)RPTSFADELAAR;S(1)RPTSFADELAAR 202.53 5.6411e-08 1200750000.0 387391.0 435516.0 405365.0 425434.0 409331.0 389919.0 394686.0 358336.0 416772.0 416035.0 True False 385305.32989918656 450011.8867850181 462436.86850425723 479293.9007792697 461456.8765550819 362964.8173005973 375593.5303330617 385076.85191333847 314064.12505867955 389483.29011451686 0.9892730694194817 1.1554074287826428 1.1873086220676896 1.2305891239604823 1.184792488579942 0.9319137085287471 0.9643379828249595 0.9886864512213533 0.8063609737052844 1.0 18.571201908536217 2.7358833746856845 24.925328679574207 0.9440066841559331 1.156412080092829 0.6499969507328398 0.07735387339270146 145.6553588317385 1356056.650279291 0.024874623438486985 0.02443527622420694 544.3564518890785 -2.7358833746856845 0.2124053959368959 S(ph)RS(ph)AS(ph)LRR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSASLRR 8 2 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 S(1)RS(1)AS(1)LRR;S(1)RS(1)AS(1)LRR 75.911 0.024541 1727670000.0 819830.0 838660.0 527990.0 691220.0 762080.0 1055130.0 794980.0 782860.0 1154300.0 785720.0 True False 815416.1263716759 866574.2911193247 602326.4026286491 778728.3811276158 859126.3707979525 982191.3466088563 756523.7802814844 841280.9884825307 869838.2318275544 735574.676911265 1.1085429555509867 1.1780915226148585 0.8188514661187961 1.0586666528510151 1.1679662143964644 1.3352707446824486 1.0284799137705314 1.1437057512843356 1.1825287888920708 1.0 19.488512288439807 3.317879383646198 5.702888420793321 1.1503099518690276 1.0327078911355978 0.14517500521653492 0.1207909084464429 0.3748250182405789 20.307727363863318 0.03390497862199894 0.04589624907871612 2079.1191743525314 -3.317879383646198 -0.11760206073342983 S(ph)RS(ph)AS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSASPR 7 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 S(1)RS(1)AS(1)PR 68.563 0.050641000000000005 73818000.0 100920.0 107370.0 61589.0 70667.0 77971.0 95455.0 88100.0 83759.0 122230.0 77760.0 True False 100376.65793326599 110943.74554346442 70260.19585881545 79613.43495434932 87900.14467967564 88856.42052690047 83838.26642531724 90009.52189958394 92108.0542980872 72797.29022631467 1.3788515701781159 1.5240092756002148 0.9651485053961238 1.0936318468289739 1.2074645142203604 1.2206006604182744 1.1516674063646877 1.2364405545832724 1.2652676220740988 1.0 16.151597128739667 4.2538313609042255 24.99961895458974 1.158698747812512 1.4514305364590026 0.5983577507021292 0.10053672590475514 164.95096401823398 270035.183618473 0.024495379376705904 0.06653638106750026 17940.368565224384 -4.2538313609042255 0.29273178864649063 S(ph)RS(ph)HS(ph)PMSNR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSHSPMSNR 10 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 S(1)RS(0.999)HS(0.997)PMS(0.003)NR;S(1)RS(0.999)HS(0.9)PMS(0.101)NR;S(1)RS(1)HS(0.923)PMS(0.077)NR;S(1)RS(1)HS(0.998)PMS(0.002)NR 94.532 0.0090672 858177000.0 831621.0 1169446.0 474732.0 922039.0 965735.0 1200866.0 886591.0 754406.0 1170068.0 826022.0 True False 827143.6449377798 1208370.3031649631 541570.139155485 1038769.0428612116 1088715.6278901969 1117852.9599545 843703.2062234784 810703.6065160477 881720.4195079291 773304.5687669865 1.0696220846808628 1.5626059278192 0.7003322636758814 1.3432857955533628 1.4078742992895088 1.445553285346402 1.0910361069878853 1.048362623550373 1.1401981251886417 1.0 19.560677211107993 2.0353575142055766 24.484308849856816 1.0685950752513524 1.2557713337308318 0.13838692339150582 0.2267960509199349 284.65328786449135 197114.84165321616 0.08384404668137614 0.06192263971645654 108.48195774875047 -2.0353575142055766 0.18717625847947938 S(ph)RS(ph)KEYHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSKEYHR 8 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 2 S(0.996)RS(0.998)KEY(0.006)HR 51.01300000000001 0.081481 101420000.0 40880.0 35660.0 19729.0 32002.0 40732.0 44819.0 42794.0 27843.0 77681.0 43377.0 True False 40659.90662219496 36846.9215430748 22506.67171245789 36053.44991876099 45918.978762521256 41720.76802257765 40723.890731044565 29920.786043889228 58537.558422070826 40608.64272308191 1.0012623888826482 0.9073664883197647 0.5542335375731512 0.8878270117180805 1.1307686168102573 1.0273864188734287 1.0028380167430995 0.7368083254573363 1.4415049235023591 1.0 15.30949918791481 3.4667582546046765 22.06687627261076 1.017090959512018 0.8115012623448802 0.22083753009518636 0.19585594972204468 85.09725204751668 181202.236977099 0.054752765769369806 0.0742703629442428 2929.2622487387325 -3.4667582546046765 -0.2055896971671377 S(ph)RS(ph)PATAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPATAK 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.994)RS(0.96)PAT(0.046)AK;S(0.978)RS(0.9)PAT(0.123)AK 76.32600000000002 0.020537 4901300000.0 3620300.0 2400250.0 1826730.0 1878970.0 2009040.0 1912100.0 2685300.0 2818230.0 4213100.0 2844560.0 True False 3600808.7070531435 2480140.8702682373 2083917.7057782025 2116847.4093448645 2264879.335486979 1779921.0275992467 2555401.7801578282 3028540.6332819685 3174837.9576476417 2663017.7454496566 1.3521534782131686 0.9313272036981713 0.7825399246171107 0.7949054838113481 0.8504935197510481 0.6683849668822627 0.9595887164192902 1.1372589005300047 1.1921955695085176 1.0 21.344630611536584 1.855627257197635 4.2747502558896295 1.1209971260532061 0.8817500177306798 0.2213004852370246 0.1757910393118577 0.31782429033516146 8.948924749118564 0.0870186145138938 0.0488203050482086 71.71784928139654 -1.855627257197635 -0.23924710832252627 S(ph)RS(ph)PAYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPAYSR 8 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(0.996)RS(0.966)PAY(0.036)S(0.002)R;S(0.996)RS(0.969)PAY(0.027)S(0.008)R 50.372 0.08875599999999999 799340000.0 112289.0 111117.0 91165.0 94056.0 97444.0 109294.0 105388.0 117960.0 124584.0 119779.0 True False 111684.44850048087 114815.46217335504 104000.23957961494 105963.47995622114 109852.91580416179 101738.76303040225 100289.97981874383 126762.77418874299 93881.94254007116 112134.60167203871 0.995985599762735 1.0239075224002407 0.9274589469161854 0.9449668378555772 0.9796522586797054 0.9072914293480857 0.8943713922671525 1.1304519060003213 0.8372254517356623 1.0 16.77487199752166 -0.8755847768533499 5.422182428381889 1.0000000250092145 0.9687471634331264 0.01279330723457417 0.07676502226320044 2.2810481541614626e-08 4.7077012479789436e-09 0.07289448913260761 0.01718138203370538 0.13317270559350639 0.8755847768533499 -0.03125286157608809 S(ph)RS(ph)PGSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPGSYK 8 1 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 2 S(0.999)RS(0.999)PGS(0.001)YK 53.569 0.077248 272270000.0 230510.0 184270.0 129100.0 162040.0 170210.0 203950.0 195490.0 200340.0 262200.0 201820.0 True False 229268.95977206848 190403.31555643267 147276.15784268384 182554.24738566455 191885.23458628968 189851.4165466592 186033.40185567853 215290.38810590695 197584.32329999554 188939.67481320514 1.2134505894473187 1.0077466034842844 0.7794877279654903 0.9662038826209819 1.015589948357838 1.0048255705656075 0.9846179847594217 1.1394662784232765 1.045753484520056 1.0 17.527566154702857 1.767919541310767 24.999999999987793 1.0757148171274997 0.9880622877668879 0.07004630495765707 0.1033991315325922 49.20730121758534 41924.9797037194 0.049264490492895066 0.02732458973501172 58.602958487010405 -1.767919541310767 -0.08765252936061185 S(ph)RS(ph)PHEAGFCVYLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 2 S(1)RS(1)PHEAGFCVYLK;S(0.999)RS(0.999)PHEAGFCVY(0.001)LK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK 157.97 2.9308e-06 2262450000.0 2862820.0 2810510.0 1820140.0 2263900.0 2324360.0 3220860.0 2841100.0 2650510.0 3892220.0 2867420.0 True False 2847406.8952092063 2904056.1263608243 2076399.8910595113 2550509.507877105 2620353.4684389154 2998209.5292889057 2703665.1389440256 2848304.5152170714 2933034.53407593 2684418.8006782304 1.0607163436978597 1.0818193217940142 0.7735007259429488 0.9501160948629578 0.9761343750747355 1.116893358268611 1.007169648141688 1.0610507252063033 1.0926143615649262 1.0 21.356178335693826 2.895621453194504 7.098478244094386 1.0551742882531259 0.9612460218724035 0.21169953035123268 0.08391148789485886 0.41576646254569755 24.768326491022354 0.02655377302031958 0.028242640042026104 786.3600709611412 -2.895621453194504 -0.09392826638072238 S(ph)RS(ph)PLAIR ddPTM_BT-474_Trastuzumab_2h_R1 6 SRSPLAIR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR 95.417 0.0054994 18244180000.0 551971.0 616416.0 530455.0 552300.0 551965.0 582676.0 575984.0 529279.0 633661.0 549485.0 True False 548999.2494657432 636933.0339286592 605138.4532024858 622221.1233714059 622254.4709971292 542396.9795917677 548121.453447445 568776.4866043038 477503.7371723821 514416.39686222357 1.0672273528108047 1.238166275052172 1.1763591846870316 1.2095670495084465 1.2096318756413746 1.054392867140738 1.0655209608224223 1.1056733223778625 0.9282436175926799 1.0 18.97257710329008 2.0298098794604016 0.840580041665696 0.9871471355366556 1.1841646171170788 0.5927437012808756 0.061383483696904224 0.4317336533208989 0.5671393496580756 0.05106809672411366 0.026064251159732255 107.1050330261298 -2.0298098794604016 0.1970174815804232 S(ph)RS(ph)PLDKDTYPPSASVVGASVGGHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPLDKDTYPPSASVVGASVGGHR 25 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 2 S(0.955)RS(0.958)PLDKDT(0.024)Y(0.063)PPSASVVGASVGGHR;S(1)RS(1)PLDKDTYPPSASVVGASVGGHR;S(0.993)RS(0.996)PLDKDT(0.004)Y(0.007)PPSASVVGASVGGHR 142.47 1.86e-07 2864390000.0 403688.0 411000.0 410669.0 482880.0 457600.0 596080.0 591490.0 560000.0 782980.0 566250.0 True False 401514.5886619534 424679.88654525304 468487.6256010623 544012.5584891983 515872.64759230416 554874.3926213906 562877.368988773 601790.0436223809 590025.0703944721 530111.4402089851 0.7574154379759562 0.8011143588560021 0.8837530942859317 1.0262230112874624 0.973140001258853 1.0467127296906538 1.061809510782998 1.1352142171939132 1.1130208209841073 1.0 19.015936149842208 4.076694119049772 0.6703129988738102 1.0919303603086212 0.6665076858382738 0.8774153873190486 0.04235162550438251 0.48016041918232205 0.28537657355211526 0.02052854188358183 0.13824939347734166 11931.474545212646 -4.076694119049772 -0.42542267447034743 S(ph)RS(ph)PLGFYVHLK ddPTM_BT-474_Trastuzumab_2h_R1 5 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 S(1)RS(1)PLGFYVHLK;S(0.998)RS(0.998)PLGFY(0.004)VHLK;S(1)RS(1)PLGFYVHLK;S(1)RS(1)PLGFYVHLK;S(1)RS(1)PLGFYVHLK 137.27 5.4163e-05 4607680000.0 2840630.0 2657610.0 1769217.0 2086175.0 2119270.0 2993060.0 2841220.0 2516590.0 4229070.0 2632860.0 True False 2825336.363703665 2746066.9422908328 2018307.3752901591 2350284.5410996587 2389146.472602581 2786156.8071053866 2703779.334085581 2704390.7247850895 3186872.3651346765 2464828.6206951495 1.1462607744739843 1.1141005582434231 0.8188428835757924 0.9535285826228412 0.9692951682493756 1.1303653258941848 1.096944149132381 1.0971921950591343 1.2929387213281753 1.0 21.233055908962417 2.733311707509105 24.0853420807847 1.1244843362595345 0.9940308824430586 0.24519944586064346 0.10767773032563878 386.8763857355236 1775231.557985248 0.03541376413144447 0.034327186213710476 541.1425795181957 -2.733311707509105 -0.13045345381647588 S(ph)RS(ph)PLLNDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSPLLNDR 9 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 S(1)RS(1)PLLNDR;S(1)RS(1)PLLNDR;S(1)RS(1)PLLNDR;S(1)RS(1)PLLNDR 93.237 0.005425500000000001 3303230000.0 1221260.0 1188350.0 999630.0 1040900.0 1076850.0 1209160.0 1169500.0 1001330.0 1238860.0 1080110.0 True False 1214684.8718547428 1227903.5113772568 1140369.21506028 1172677.8332741177 1213980.4645099936 1125573.615256476 1112926.817076146 1076054.329250713 933559.5528735033 1011176.455071305 1.201259054008617 1.214331588931893 1.1277648024150886 1.159716315973184 1.2005624324237132 1.1131327372304214 1.1006257231312468 1.0641607840590326 0.9232409914129889 1.0 19.947603345638406 1.774673724737337 1.094326981139471 0.9646625610387337 1.1772627214482527 0.8292680582547776 0.03681346130371918 0.18849067656491103 0.4193466891917878 0.030975149212505975 0.012534456553287103 59.52148045839396 -1.774673724737337 0.212600160409519 S(ph)RS(ph)PPPVSK ddPTM_BT-474_Trastuzumab_2h_R1 10 SRSPPPVSK 9 1 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 2 S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK 92.457 0.0057261000000000005 94222476000.0 10264943.0 8334874.0 6239350.0 6694065.0 7000755.0 9741811.0 9317005.0 9203375.0 12784852.0 8685891.0 True False 10209677.687430382 8612295.242552279 7117796.246597607 7541532.942642056 7892259.652524179 9068382.535326429 8866305.873734543 9890177.576291306 9634196.532839801 8131550.00001459 1.2555635379985444 1.059120984626157 0.8753308098191409 0.9274410097249017 0.9705726033179428 1.115209589230855 1.0903586491774182 1.2162721223227504 1.184792140836927 1.0 22.95509894797082 2.5747237565227947 3.478966206810184 1.1443629596286444 1.0073740736226284 0.16709092737590425 0.10973902250052295 0.3723387334471491 8.4350583183077 0.03966551033564028 0.0363942823897386 375.5984198589729 -2.5747237565227947 -0.136988886006016 S(ph)RS(ph)PQAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPQAFR 8 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 2 S(1)RS(1)PQAFR 84.169 0.010039 478260000.0 67584.0 87155.0 63750.0 83553.0 53391.0 75138.0 40893.0 78993.0 88995.0 67931.0 True False 67220.13525328833 90055.90148869003 72725.44587506658 94130.8012331178 60190.027376749764 69943.88691582682 38914.8493635698 84887.85877832644 67063.3747219036 63595.585421344964 1.0569937332588315 1.416071585661731 1.1435612298123023 1.4801467839232143 0.9464497728571554 1.0998229901088565 0.611911174427346 1.3348074118024398 1.0545287739327063 1.0 15.956639001792084 3.21895806693924 24.99960775486883 1.0226030954260426 1.2749967028788407 0.29363699409382216 0.2015492993885154 316.3682551015454 403471.25699425465 0.056906670452650944 0.06810503296138684 1655.6100992448523 -3.21895806693924 0.25239360745279815 S(ph)RS(ph)PQWR ddPTM_BT-474_Trastuzumab_2h_R1 6 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR 100.69 0.0054688 9955410000.0 737221.0 630134.0 586871.0 605902.0 614612.0 744548.0 746302.0 591967.0 882195.0 624726.0 True False 733251.8840489526 651107.6292659539 669497.3356258229 682609.1310754681 692879.1951092683 693079.1492374695 710200.5211095026 636142.583487519 664789.8630573587 584855.4518251625 1.2537318097329662 1.1132795757208687 1.144722740527626 1.167141605580054 1.1847016095122227 1.1850434959177907 1.214318031734465 1.0876919784235648 1.1366737900497366 1.0 19.15772057827253 0.8370855978033169 0.9145641453106378 1.001964580185696 1.1745237464897524 0.6054507128205515 0.04238989153059853 0.5190903562761362 0.8699364549138643 0.0393765667311267 0.013312750311036266 6.872038719568252 -0.8370855978033169 0.17255916630405643 S(ph)RS(ph)PS(ph)PAPEKK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSPSPAPEKK 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 S(1)RS(1)PS(1)PAPEKK;S(1)RS(1)PS(1)PAPEKK;S(1)RS(1)PS(1)PAPEKK;S(1)RS(1)PS(1)PAPEKK 96.773 0.0044655 2727030000.0 5008890.0 3841130.0 2138230.0 2637840.0 2944740.0 5041330.0 4219490.0 4335960.0 7078270.0 4119440.0 True False 4981922.692779991 3968979.690037877 2439274.198171666 2971790.273536169 3319735.1841585725 4692834.723114332 4015377.1486828784 4659531.352758756 5333925.202458654 3856533.8123699813 1.2918135650205584 1.0291572388934387 0.6325042944904565 0.7705858208747027 0.8608080067936636 1.216852995833171 1.041188109333672 1.2082174251430466 1.3830878871980539 1.0 21.878873329179598 2.739130706954458 24.858891322696074 1.1739091703942797 0.8992696681734469 0.3084378519461306 0.1883614467788285 59.42351904534377 2591223.5232632062 0.062184701258160544 0.0624098479161578 548.4420013199617 -2.739130706954458 -0.2746395022208328 S(ph)RS(ph)PSS(ph)PELNNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(1)RS(0.995)PS(0.008)S(0.997)PELNNK;S(1)RS(0.946)PS(0.066)S(0.988)PELNNK 213.91 2.5836e-09 1058610000.0 2518640.0 2579440.0 1310030.0 1878210.0 2191820.0 3426100.0 2720780.0 2763060.0 4277600.0 2734310.0 True False 2505079.922087212 2665295.10109559 1494470.8370151161 2115991.1934227915 2470935.2850650423 3189261.7711718986 2589165.477011061 2969253.5677343872 3223442.796903357 2559803.9948394345 0.9786217722675071 1.0412106186523755 0.5838223707861889 0.8266223498707832 0.9652830021542463 1.2459007711533583 1.0114702071841513 1.1599534861733176 1.2592537566945823 1.0 21.287601916073285 2.967349298318547 4.524370097051799 1.1353342083868663 0.8540274755778016 0.48079150484218913 0.1366219506798605 0.1814256172085742 8.774551991066629 0.042794916921012435 0.047557093527145995 927.5755623597149 -2.967349298318547 -0.2813067328090647 S(ph)RS(ph)PSSPELNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.858)RS(0.721)PS(0.269)S(0.153)PELNNK 95.954 0.0032756 592750000.0 643770.0 475630.0 406200.0 399220.0 435720.0 647910.0 565550.0 533030.0 836070.0 540400.0 True False 640304.0138495715 491461.05702559307 463389.4292463064 449761.21106705116 491206.3592852243 603121.5067160858 538192.1858891965 572807.4052714969 630031.7512640253 505911.2093402831 1.2656450421103318 0.9714373746857017 0.9159501127689464 0.8890121483047341 0.9709339311255146 1.1921489296561874 1.0638075930181667 1.13222912379911 1.2453405649690932 1.0 18.94852467934693 2.750067619687063 24.68475063873741 1.129270157593111 0.9897408519061093 0.22345759963402956 0.11438275539815154 883.3848656128118 1895029.5254529496 0.03515061397238713 0.036996686690735706 562.4288885982322 -2.750067619687063 -0.13952930568700173 S(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPTPPSSAGLGSNSAPPIPDSR 24 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 3 S(0.905)RS(0.96)PT(0.567)PPS(0.456)S(0.112)AGLGSNSAPPIPDSR;S(1)RS(0.999)PT(0.993)PPS(0.007)S(0.002)AGLGSNSAPPIPDSR 147.74 1.4470000000000002e-07 1107420000.0 518400.0 501640.0 359400.0 479440.0 470840.0 561990.0 548660.0 501400.0 657350.0 486720.0 True False 515608.9919996539 518336.78415221587 410000.3960391993 540137.0548419094 530798.6831126761 523140.9540821614 522119.219715262 538817.0140576109 495354.9005387192 455657.1128980435 1.1315723543089409 1.1375588561660344 0.8998002762022939 1.1854024430927055 1.1649081471300244 1.1481022445911382 1.145859912938723 1.182505438422016 1.087122062877922 1.0 18.797589062858382 S(ph)RS(ph)PTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPTIK 7 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 2 S(0.999)RS(0.997)PT(0.004)IK 59.245 0.059573 758900000.0 416360.0 335560.0 288040.0 315330.0 313720.0 328400.0 352000.0 1218900.0 603840.0 574180.0 True False 414118.36402194464 346728.9117496963 328593.5283114383 355250.7456684869 353670.3824358775 305698.48097044765 334972.4152294177 1309860.5074487864 455031.72304145445 537535.3408197697 0.7704021160550902 0.645034633854802 0.6112966038852736 0.6608881662119385 0.6579481488538252 0.568703967453082 0.6231635202228138 2.4367895615033985 0.846514988851723 1.0 19.036000083742298 1.7880117156230497 24.999999969104877 1.5816257619758243 0.6444681760871999 0.424525995793552 0.404176593566758 82.15188024966413 41544.23256855133 0.1717155984659983 0.0966742204163578 61.377856236637726 -1.7880117156230497 -0.9371575858886244 S(ph)RS(ph)PVDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 S(1)RS(1)PVDLR;S(1)RS(1)PVDLR 98.902 0.004093199999999999 2411900000.0 1310680.0 1248500.0 1015930.0 1194000.0 1104070.0 1424030.0 1379430.0 1157770.0 1693100.0 1192410.0 True False 1303623.4445102378 1290055.5677658124 1158964.1133781392 1345160.2775764226 1244666.7701644124 1325590.157906051 1312701.7009656695 1244168.6764369372 1275858.1913776614 1116309.3729264382 1.1677976339952698 1.1556434076907312 1.0382105010368947 1.2050067035180803 1.1149837136111125 1.187475613889165 1.1759300179701824 1.1145375167596345 1.1429252699302894 1.0 20.090305479047903 0.08055420876681613 1.0994373824457806 0.9992911225924257 1.1450868037974868 0.4830156414197765 0.04494949210311317 6.085897502443162 6.440385813038698 0.05399296057527354 0.01273120777807427 1.2037996390440762 -0.08055420876681613 0.14579568120506115 S(ph)RS(ph)RS(ph)PPPVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSRSPPPVSK 11 2 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 3 S(1)RS(1)RS(1)PPPVSK;S(1)RS(1)RS(1)PPPVS(0.001)K 104.78 0.0016866 2320350000.0 1551770.0 1469760.0 733520.0 1103030.0 1186150.0 1834380.0 1493760.0 1471090.0 2156550.0 1434550.0 True False 1543415.442737853 1518680.0731113176 836793.2401298657 1242673.4849037868 1337199.171638137 1707573.6282660477 1421501.1220826535 1580870.205843661 1625097.1487894938 1342995.7908199537 1.149233268851524 1.13081521438284 0.623079570203991 0.9252996125513424 0.995683814334014 1.2714661058047727 1.0584553814682987 1.1771222342241856 1.2100537916036995 1.0 20.357023352441953 2.924536954350601 6.592312139763402 1.1486116049616508 0.9472561245433386 0.2588956727343582 0.15166199239709618 0.329746092161066 23.931446734921643 0.047748617386239374 0.050972973261071905 840.4985225277277 -2.924536954350601 -0.2013554804183122 S(ph)RS(ph)RT(ph)PLISR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSRTPLISR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(1)RS(0.992)RT(0.988)PLIS(0.02)R 72.428 0.07685700000000001 2048600000.0 1375500.0 1616800.0 953270.0 1350200.0 1376900.0 1942000.0 1513900.0 1555000.0 2066400.0 1563700.0 True False 1368094.4608324177 1670614.2106237598 1087482.130028623 1521135.1815608765 1552240.0534743087 1807754.1109762767 1440666.873340385 1671041.9961300055 1557163.4083413822 1463903.3272490753 0.934552463517725 1.141205282840042 0.7428647163963947 1.0390953782579002 1.060343278535498 1.2348862642271303 0.9841270571108302 1.1414975053511076 1.0637064479302458 1.0 20.481388853886457 3.4881688946766363 24.138971227752595 1.0882475736434567 0.9482527412269146 0.24095730262769088 0.11133315555116798 450.2132499947769 983709.6551980749 0.028702346960281774 0.04162242845137804 3077.293324100053 -3.4881688946766363 -0.1399948324165421 S(ph)RS(ph)RT(ph)PLLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSRTPLLPR 10 2 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(1)RS(1)RT(1)PLLPR;S(1)RS(1)RT(1)PLLPR 92.265 0.015341999999999996 1817400000.0 1569820.0 1748640.0 949050.0 1461750.0 1475520.0 2109740.0 1666890.0 1682780.0 2339000.0 1636740.0 True False 1561368.2635434002 1806842.4253247995 1082667.9907095209 1646807.400123397 1663418.7259077716 1963898.6395937654 1586256.1625618292 1808357.5885836997 1762584.7909942383 1532281.8519163865 1.0189824160552683 1.1791841188127543 0.7065723511346527 1.0747418290334616 1.08558273650985 1.2816823726898328 1.0352247927350562 1.1801729468518027 1.1503006374380913 1.0 20.547250264081683 3.4877667852101943 24.208140688087273 1.1310069952616277 0.9728929265227697 0.21657798316086252 0.13019215688210062 479.1788845923934 1089661.0392212442 0.034205676417685536 0.049478737621714716 3074.445403732771 -3.4877667852101943 -0.15811406873885803 S(ph)RS(ph)RTS(ph)PVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSRTSPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.992)RS(0.933)RT(0.153)S(0.921)PVS(0.001)R 58.07899999999999 0.074907 83660000.0 153510.0 162040.0 88996.0 147900.0 140040.0 186510.0 147690.0 153920.0 206570.0 156910.0 True False 152683.5192165644 167433.40344475154 101525.86323290088 166624.12483547145 157873.26391788956 173617.00269731475 140545.67046941115 165406.29198992322 155663.59139618633 146895.86946259046 1.0393996766222746 1.1398101529831737 0.6911417155861974 1.1343009537644293 1.0747290886766199 1.1819052729833854 0.9567707450426542 1.1260105038695234 1.0596866471853297 1.0 17.16443430403 S(ph)RS(ph)S(ph)SPVTELASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.895)RS(0.895)S(0.715)S(0.479)PVT(0.016)ELASR 53.924 0.09404 0.0 232420.0 292610.0 203730.0 231990.0 260670.0 305450.0 286290.0 269220.0 343400.0 249070.0 True False 231168.67654428957 302349.34696351946 232413.41314709515 261359.9102135293 293864.77938786236 284334.96045195905 272441.05896599434 289310.5634714597 258773.6713242504 233174.13936044503 0.9913992914409115 1.296667579830292 0.9967375189399802 1.1208786314399737 1.260280321796752 1.2194103567052461 1.168401692028333 1.2407489280972017 1.1097871832357582 1.0 17.831048266897696 4.773970833844434 23.0341308294976 1.1673681774334157 0.9913981952919431 0.19797433912430507 0.09800457999594359 9184.877492899775 5974386.762432469 0.022291767824372113 3.9351456621153265 59425.22487473681 -4.773970833844434 -0.17596998214147264 S(ph)RS(ph)VS(ph)PCSNVESR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(1)RS(0.999)VS(0.978)PCS(0.023)NVESR 87.38799999999998 0.006841 514730000.0 241230.0 290870.0 229150.0 238290.0 240250.0 285580.0 249440.0 244940.0 314480.0 260780.0 True False 239931.24448317286 300551.43211537215 261412.32819249443 268457.4895675759 270844.4134266852 265838.5267830103 237373.63424666476 263218.6665801178 236980.61781610467 244136.7971350092 0.9827737862493926 1.2310779679360064 1.0707616846793142 1.0996191181254713 1.1093961115452273 1.0888916783650597 0.9722976504660035 1.0781605627215474 0.9706878299261577 1.0 17.897330233887157 2.3714450336580297 6.652984269292256 1.0178130074980063 1.1040099520372066 0.3263413894630368 0.06346423542727779 0.25899409848730715 14.496613633107724 0.02067429062333868 0.017230570390276128 235.20417891343874 -2.3714450336580297 0.08619694453920035 S(ph)RS(ph)YS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSYSPR 7 1 Q8IYB3;P62995;P62995-3;H7BXF3;H7C2L4;J3KTL2;Q07955;J3KSR8;Q13595;Q13595-3;Q13595-4 Q8IYB3;P62995;J3KTL2;Q13595 SRRM1;TRA2B;SRSF1;TRA2A Serine/arginine repetitive matrix protein 1;Transformer-2 protein homolog beta;Serine/arginine-rich splicing factor 1;Transformer-2 protein homolog alpha 3 S(0.999)RS(0.932)Y(0.071)S(0.998)PR;S(0.999)RS(0.976)Y(0.027)S(0.998)PR 102.28 0.007042100000000002 840960000.0 1216230.0 1376680.0 804510.0 1049050.0 1177710.0 1468720.0 1188800.0 1133420.0 1621860.0 1131590.0 True False 1209681.9528158556 1422501.961579368 917778.0150737234 1181859.6224384801 1327684.3876659374 1367190.8433949945 1131293.2023429885 1218001.5557901426 1222174.3348105687 1059370.9573970593 1.1418870267957126 1.3427798370785473 0.8663424352587137 1.1156239598472504 1.2532761809216868 1.2905685528271116 1.06789146374434 1.1497403693063746 1.1536792907873625 1.0 20.014776432200325 -1.458108949166476 5.1520334455808205 0.9997537145334455 1.1525040676254439 0.11969846775053028 0.12488048085713223 0.00034695720268657245 3.649289766995028e-05 0.11875196032504302 0.02794521478680804 0.034824994045076205 1.458108949166476 0.15275035309199836 S(ph)RS(ph)YT(ph)PEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSYTPEYR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 S(0.999)RS(0.58)Y(0.504)T(0.911)PEY(0.005)R 110.14 0.016791999999999998 718470000.0 959790.0 1102500.0 679710.0 906840.0 960900.0 1283500.0 1040400.0 1034300.0 1274700.0 958550.0 True False 954622.5972826928 1139196.0460246764 775407.2598547692 1021645.8510195999 1083264.9192994866 1194774.666034012 990071.8772860406 1111484.7180689792 960567.2651048981 897374.5183440577 1.0637950797224285 1.2694767042492543 0.8640843304595309 1.138483242097026 1.2071491859368326 1.3314114024975352 1.1032984077963781 1.2385962553516932 1.0704195912287005 1.0 19.77535069257119 5.0506353782399 15.315205359218528 1.1470724927752929 0.5672864900657655 0.02038831316079992 0.13058624141242342 3873515.283900451 31707291.352155745 0.030489309227329668 65988425.62304612 112366.11826580236 -5.0506353782399 -0.5797860027095274 S(ph)RSASLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSASLR 7 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 S(0.845)RS(0.155)ASLR 54.982 0.07896 106310000.0 37170.0 40795.0 35354.0 41580.0 41394.0 31640.0 46587.0 38299.0 46306.0 39240.0 True False 36969.88084997523 42152.836913901745 40331.535897523216 46844.02373670654 46665.28053853987 29452.801272548608 44333.40883037748 41157.065858381415 34894.5067686102 36735.669604945804 1.006375581214338 1.14746341545457 1.0978848713320661 1.2751645537012295 1.27029889587904 0.8017494056671097 1.206821852089196 1.1203570344840086 0.9498807873618362 1.0 15.164893951353124 S(ph)RSDIDVNAAAGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 S(0.5)RS(0.5)DIDVNAAAGAK 164.01 2.5377000000000003e-06 255920000.0 559420.0 440870.0 365940.0 410220.0 376640.0 464210.0 422920.0 433740.0 657210.0 518990.0 True False 556408.1448774051 455544.0914384573 417461.1711924997 462153.8099391954 424602.87147982 432120.25533280015 402461.7438887083 466107.88128709205 495249.40166281513 485867.6138703066 1.1451846737533902 0.9375889201786897 0.859207650962991 0.9511928697156564 0.8739065114826936 0.8893785940796348 0.8283362224594333 0.9593310358230853 1.019309349964233 1.0 18.890203745406378 4.731298034092773 4.4479415331791285 0.915620728280816 1.1596121469343572 0.5601290023596919 0.0585822599946595 0.13285089990316376 6.570701725985181 0.01389937092130003 0.1009145189340044 53863.92963152042 -4.731298034092773 0.24399141865354124 S(ph)RSDIDVNAAASAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSDIDVNAAASAK 14 1 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(0.5)RS(0.5)DIDVNAAASAK;S(0.5)RS(0.5)DIDVNAAASAK;S(0.5)RS(0.5)DIDVNAAASAK;S(0.5)RS(0.5)DIDVNAAASAK 266.83 3.931e-25 6162400000.0 4987310.0 3965670.0 3701160.0 3461330.0 3409590.0 4383190.0 4292530.0 4136020.0 6257630.0 4798340.0 True False 4960458.877102228 4097664.9286518632 4222251.156940577 3899534.023101841 3843781.0762767564 4080190.3922194135 4084883.924842988 4444670.814684008 4715520.934446039 4492105.833134447 1.1042613556682344 0.9121924284211809 0.9399269104028267 0.8680859641236172 0.8556746477174357 0.9083023739385917 0.9093472141088642 0.9894403604428571 1.0497350484629386 1.0 22.098960487075956 1.583293398254039 3.80563585320501 1.023973044759797 0.9223659123460467 0.2672945071192876 0.06529743740637446 0.2295585032186781 7.623656064469915 0.04048007292182081 0.017270604002700602 38.30834573111691 -1.583293398254039 -0.1016071324137503 S(ph)RSESETSTMAAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSESETSTMAAK 13 1 Q96B23-2;Q96B23;A0A087WVF1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 S(0.521)RS(0.307)ES(0.172)ETSTMAAK;S(0.485)RS(0.485)ES(0.03)ETSTMAAK;S(0.389)RS(0.389)ES(0.222)ETSTMAAK;S(0.494)RS(0.494)ES(0.011)ETSTMAAK 182.17 5.6778e-06 2656530000.0 2764260.0 2373180.0 2346140.0 2292710.0 2231140.0 2660980.0 2705610.0 2813010.0 3567840.0 2781610.0 True False 2749377.5312981606 2452169.861682395 2676456.118985549 2582966.8509231447 2515262.4539971463 2477032.715873151 2574729.30786609 3022931.090375345 2688593.6386066247 2604085.2683438687 1.0557939729242023 0.9416626603943395 1.0277912753170737 0.9918902742251007 0.9658909731465086 0.951210294833579 0.9887269588155813 1.1608418230858668 1.0324522285387763 1.0 21.312345258304987 1.78326694879513 24.999999999998302 1.0815470816290373 0.9864362967937904 0.30127187999135885 0.05056803373709052 73.07811024571993 40879.337730896346 0.021875853284851667 0.012198030756479994 60.7109388256244 -1.78326694879513 -0.09511078483524693 S(ph)RSGEGEVSGLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 S(0.5)RS(0.5)GEGEVSGLMR;S(0.5)RS(0.5)GEGEVSGLMR 129.03 0.00024038 1021963900.0 809602.2 781264.5 837742.2 765471.4 785654.0 746076.4 852111.6 890482.3 1170425.7 928322.1 True False 805243.3917104607 807268.4165981362 955689.0199742632 862380.0007544499 885702.3799639076 694501.8945429364 810891.706525577 956934.6110034978 881989.9691358646 869075.7888014646 0.9265514033257851 0.928881493421228 1.099661309507018 0.992295507327101 1.01913134777966 0.799126961643608 0.9330506234029039 1.1010945458775219 1.0148596710445816 1.0 19.729122468922196 1.750307403761313 24.999999998987256 1.0466050600124657 0.9590457321294624 0.18988867074279703 0.07671570916056686 5.431897029389661 11580.24716768124 0.037434503481052026 0.020759677971875425 56.27395043968185 -1.750307403761313 -0.08755932788300325 S(ph)RSGS(ph)QGRTDSVEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSGSQGRTDSVEK 14 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 2 S(0.979)RS(0.364)GS(0.657)QGRT(0.001)DSVEK 122.49 0.00053341 736170000.0 829270.0 881110.0 734260.0 912630.0 908890.0 1020700.0 1102500.0 930430.0 1774800.0 1253700.0 True False 824805.3024605584 910437.2137077576 837637.4256976696 1028168.8644259382 1024631.7540869084 950141.4114693552 1049167.8630410023 999863.4112278072 1337424.321101571 1173687.7926534298 0.7027467676015179 0.7757064693068632 0.7136799334037291 0.8760156413499813 0.8730019690930405 0.8095350547365844 0.8939071102282512 0.8518989611090297 1.1395060334383915 1.0 20.162617264064814 2.5848177599011977 0.3365800773005179 1.0424025768124905 0.6808908826093852 0.6420250035258055 0.07449505410199525 1.2364026092953007 0.3035171347485805 0.09140319961103399 0.1618588670945958 384.43043221466115 -2.5848177599011977 -0.36151169420310525 S(ph)RSGS(ph)S(ph)PGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSGSSPGLR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.92)RS(0.358)GS(0.827)S(0.895)PGLR 69.352 0.046667 196400000.0 191820.0 250050.0 118660.0 218030.0 221720.0 266570.0 213460.0 215300.0 267350.0 224270.0 True False 190787.2624332057 258372.76309158324 135366.29658879066 245632.5756448805 249954.72776259977 248142.6433382835 203134.12430361187 231366.77927124745 201465.1748064598 209956.89659279276 0.908697287535326 1.230599076689022 0.6447337467143597 1.1699190625839742 1.1905049646803554 1.1818742197335448 0.9675039381896869 1.101972752626358 0.9595549280631516 1.0 17.679733652544524 5.037415567462896 14.80258730006981 1.0520151791961578 0.39572311599739457 0.06222918002247291 0.16389230542557567 2415333.8408647217 28948671.508472204 0.03757756523427252 40952161.64950568 108997.25668381946 -5.037415567462896 -0.6562920631987632 S(ph)RSGSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSGSIK 7 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 S(0.939)RS(0.061)GSIK 63.426 0.048147 131220000.0 87800.0 139860.0 126650.0 81325.0 121200.0 95009.0 153260.0 125280.0 149950.0 149140.0 True False 87327.29455549696 144515.1555528448 144481.21913846562 91620.7366615598 136634.1015913184 88441.25145712936 145846.22828994464 134629.02975895003 112996.83172705688 139621.75751482195 0.6254562047482212 1.0350475321692136 1.0348044725273409 0.6562067280368787 0.9786017883123526 0.6334345952330576 1.044580951321014 0.9642410477798068 0.809306756613928 1.0 17.091164251320123 -1.0830642916069104 4.444722788910229 1.0000089889721806 0.8794613721791982 0.05057716680228075 0.16505499968528373 1.5556991667574122e-05 3.2092185924894193e-06 0.15006133575370048 0.0353668241468785 0.08259156745342444 1.0830642916069104 -0.12054761679298243 S(ph)RSGSSQELDVKPSASPQER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSGSSQELDVKPSASPQER 20 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.499)RS(0.499)GS(0.002)S(0.001)QELDVKPSASPQER 112.74 7.778699999999999e-05 276920000.0 65644.0 77479.0 64463.0 61679.0 70531.0 98172.0 83329.0 100130.0 127990.0 90305.0 True False 65290.579997734065 80057.8416779555 73538.83007755941 69487.55507590967 79512.70478001052 91385.60071203035 79298.05792230717 107602.2090498376 96448.57947813298 84541.65758599971 0.7722888557196486 0.9469632363964112 0.8698531845410328 0.8219327259490233 0.9405150910262967 1.0809535005753663 0.937976143200664 1.2727714611034167 1.1408408852171013 1.0 16.367374778736913 2.5804681030858885 1.1769654248589918 1.1424030637309106 0.8572315929615792 0.5762964138400921 0.0936131851961822 0.30712299343351485 0.8692996905432582 0.049119422509506044 0.039089340729195086 380.59940331487104 -2.5804681030858885 -0.28517147076933136 S(ph)RSHDSASSSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSHDSASSSLSSK 14 1 Q4ZG55;Q4ZG55-4 Q4ZG55 GREB1 Protein GREB1 1 S(0.572)RS(0.336)HDS(0.092)ASSSLSSK 130.36 3.7869e-05 326000000.0 120280.0 220560.0 247890.0 281760.0 262640.0 285500.0 280300.0 270310.0 238290.0 293700.0 True False 119632.4258443643 227901.20626866448 282790.75730149425 317430.78711049614 296085.6472107578 265764.0569947104 266740.8181500165 290481.9048063676 179566.62242241023 274955.8145507792 0.43509691198863676 0.8288648364865745 1.0284952793724902 1.1544792665291048 1.0768481026469665 0.9665700557339142 0.9701224852648259 1.056467582913112 0.6530744684042593 1.0 18.068840270346097 4.67525363409922 2.4953831151559465 0.9996774388772055 0.35352489123120345 0.6386199809930817 0.12547368909071427 0.2624899014766892 2.2644809607615426 0.030945420955535277 0.33840638474008794 47342.76666713683 -4.67525363409922 -0.646152547646002 S(ph)RSHSDNDRPNCSWNTQYSSAYYTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.634)RS(0.151)HS(0.216)DNDRPNCSWNTQYSSAYYTSR 144.26 1.2899000000000002e-07 1076300000.0 79123.0 85239.0 88097.0 121970.0 113430.0 108980.0 108950.0 114030.0 122580.0 143470.0 True False 78697.01055939167 88076.12858693642 100500.29184714891 137411.389494134 127874.6381477166 101446.4691113257 103679.67227058244 122539.49763260734 92371.80148784691 134313.62176915328 0.5859198011550112 0.6557497849199101 0.7482509258806243 1.0230636899234606 0.9520600849219638 0.7552954627765394 0.7719222436632537 0.912338570120741 0.6877321917996346 1.0 17.03524610133351 4.11134605757316 3.2016004884366813 0.8646098578292587 0.6153071947562988 0.47913662103031496 0.10442464298314841 0.20857201703483394 4.197355278674029 0.026899586100150575 0.06842276004181412 12922.485620335921 -4.11134605757316 -0.2493026630729599 S(ph)RSHTSEGAHLDITPNSGAAGNSAGPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 S(0.235)RS(0.235)HT(0.235)S(0.235)EGAHLDIT(0.062)PNSGAAGNSAGPK;S(0.249)RS(0.249)HT(0.249)S(0.249)EGAHLDIT(0.006)PNSGAAGNSAGPK;S(0.25)RS(0.25)HT(0.25)S(0.25)EGAHLDITPNSGAAGNSAGPK 127.3 3.8761e-05 961640000.0 183409.0 279021.0 310664.0 303673.0 289339.0 543040.0 499580.0 252590.0 412128.0 483630.0 True False 182421.54632265578 288308.04531324364 354402.79086010467 342117.9706637059 326184.6066033869 505500.9229786597 475413.40681906976 271439.54842603096 310564.5766322675 452764.31934352557 0.40290618878085044 0.6367728926415155 0.7827533569207976 0.7556204321925177 0.7204291342487638 1.1164769425991832 1.0500240114070465 0.5995162092710795 0.6859298830847866 1.0 18.78840074370549 4.968722252250966 0.949225881468794 0.8420480270652506 4.847662201364967e-18 0.4457236976455822 0.1566228388237834 3.139793173550895 1.6778897433901656 0.05350114317814947 3.0036368597154937 93051.25871358746 -4.968722252250966 -0.8420480270652506 S(ph)RSKDSVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSKDSVPK 9 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 S(0.626)RS(0.368)KDS(0.006)VPK;S(0.575)RS(0.404)KDS(0.021)VPK 56.729 0.062628 1347910000.0 4394800.0 2768000.0 2072530.0 1805390.0 1595600.0 2762800.0 2283500.0 2064570.0 4684600.0 2610100.0 True False 4371138.885108182 2860131.2067086636 2364324.209246302 2033952.1888891906 1798790.202137851 2571814.1389316497 2173038.381182883 2218638.697074038 3530143.1004239474 2443521.1833809675 1.7888688319288786 1.1704957690406659 0.967588996292193 0.8323857401861855 0.7361467600002398 1.0525033121968561 0.8893061357365307 0.9079678589093417 1.4446951082042514 1.0 21.22053018097903 4.73289066297441 2.248557175466333 0.9571610631639943 1.9953302771024863 0.647204684510215 0.17907612609551457 0.3579872207526662 2.1201125265528025 0.0444801547436454 0.7348663626366762 54061.82009596693 -4.73289066297441 1.0381692139384922 S(ph)RSPAPPADK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPAPPADK 10 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.5)RS(0.5)PAPPADK 71.344 0.031047 220630000.0 344850.0 272640.0 275400.0 238790.0 243310.0 351780.0 293620.0 291880.0 394380.0 295620.0 True False 342993.3659164365 281714.65758563974 314173.9261802882 269020.78951630957 274294.0862886442 327462.27660104807 279416.47886267514 313661.56773660827 297190.333421252 276753.2785069848 1.2393470739237507 1.0179270833047411 1.135213023943848 0.9720599913670758 0.9911141351907108 1.1832281748119686 1.0096230128512211 1.1333617055188452 1.0738457554126188 1.0 18.078240882167226 4.748142743570941 24.442809464751996 1.0640756693367994 1.2393472031247712 0.38407696546850456 0.06866192661355486 1000.863561542833 2553004.7508961656 0.015663423232243748 0.19910488333798265 55994.16124247861 -4.748142743570941 0.17527153378797178 S(ph)RSPAPPADKEAEKPVFFPAFAAEAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPAPPADKEAEKPVFFPAFAAEAQK 27 3 C9J0Q5;C9JE98 C9J0Q5 NCOR2 1 S(0.592)RS(0.408)PAPPADKEAEKPVFFPAFAAEAQK;S(0.554)RS(0.446)PAPPADKEAEKPVFFPAFAAEAQK 166.07 5.044699999999999e-11 1804430000.0 1420760.0 1170990.0 1082510.0 980480.0 960610.0 1652220.0 1479340.0 1307120.0 2256720.0 1395690.0 True False 1413110.7860212752 1209965.694271596 1234917.9986544058 1104608.6674691201 1082937.989518451 1538005.9203075306 1407778.6725724048 1404663.9318208704 1700581.5944987268 1306615.869289674 1.0815043803114803 0.9260301537049134 0.9451270474204129 0.845396641378332 0.8288112941006733 1.1770911072308106 1.0774235225979052 1.0750396997585059 1.3015161031399591 1.0 20.317403636299307 2.7318255909905385 24.94967071046706 1.1220525498881715 0.922064576484535 0.5148854963344676 0.09740534457406573 433.4651377865822 1605752.002677427 0.03109871016013459 0.029926977112279592 539.2940030881426 -2.7318255909905385 -0.1999879734036365 S(ph)RSPAPPADKEAFAAEAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPAPPADKEAFAAEAQK 19 2 Q9Y618;Q9Y618-4;Q9Y618-5 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.605)RS(0.395)PAPPADKEAFAAEAQK 139.47 9.6359e-08 242180000.0 363780.0 281270.0 253100.0 242670.0 236370.0 343110.0 356620.0 336320.0 509400.0 363170.0 True False 361821.4488997574 290631.90191869467 288734.2800153628 273391.9971184846 266470.31842524663 319391.61329406314 339368.9281793039 361417.90619835554 383865.19561028905 339992.1796745199 1.064205209796693 0.8548193731894697 0.8492380039204809 0.8041126045316901 0.7837542577607021 0.9394087052232258 0.9981668652031565 1.0630182921982112 1.1290412502363127 1.0 18.375142037051134 2.2064152618763284 2.136244447238665 1.0666451160799775 0.8658945461656612 0.5368259980162391 0.07786992934703002 0.23623907867958643 2.170758438482443 0.037978464866380374 0.024626880144155858 160.8478506185892 -2.2064152618763284 -0.20075056991431628 S(ph)RSPATAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPATAK 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.5)RS(0.5)PATAK;S(0.629)RS(0.371)PATAK 70.942 0.030297 800640000.0 1153930.0 1002000.0 849740.0 685980.0 853130.0 746910.0 1051940.0 1018030.0 1531700.0 1117860.0 True False 1147717.3690936766 1035350.9642782101 969376.0059275165 772824.9976648863 961771.0486023219 695277.8697370195 1001053.6433989587 1094000.5680515952 1154233.0587284637 1046517.2177519053 1.096701850313716 0.9893300814508507 0.926287680206446 0.7384732755042904 0.9190207598001756 0.664373082394758 0.9565572609969953 1.0453727368209882 1.1029279204865354 1.0 19.997164616953103 1.8560514406314925 3.9814693564229535 1.0531508159694032 0.8850496202001277 0.2694196700817535 0.11643644687820608 0.31169878266704354 7.883105222946908 0.05991900724086693 0.033089773095728296 71.78793164789005 -1.8560514406314925 -0.1681011957692755 S(ph)RSPES(ph)QVIGENTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 S(0.91)RS(0.09)PES(0.999)QVIGENT(0.001)K;S(0.995)RS(0.005)PES(1)QVIGENTK;S(0.986)RS(0.032)PES(0.982)QVIGENTK 231.17 7.6248e-12 1450260000.0 4339770.0 3263550.0 2539980.0 2574010.0 2722000.0 3992650.0 3670570.0 3602830.0 5008160.0 3416420.0 True False 4316405.160513772 3372175.288892363 2897587.106098066 2899879.40208081 3068630.565441986 3716647.5031871456 3493010.5061609196 3871691.469400042 3773966.07390582 3198381.150655684 1.3495593418029266 1.0543381573522126 0.9059542842490946 0.9066709893179306 0.9594324193703122 1.162040209755868 1.092118275348401 1.210515972621439 1.1799613292281121 1.0 21.608910444163268 2.724892365070899 24.394916419670633 1.1443541584320545 1.0219349442311663 0.10558317305291309 0.12982925040786467 1078.641227773023 1925141.0291926214 0.043502032144184334 0.04123574660861634 530.7528868856358 -2.724892365070899 -0.1224192142008882 S(ph)RSPGRPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPGRPPK 9 2 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 S(0.711)RS(0.289)PGRPPK;S(0.862)RS(0.138)PGRPPK 62.088 0.066873 570100000.0 421830.0 636270.0 665860.0 478450.0 667240.0 909430.0 677820.0 578230.0 851310.0 671580.0 True False 419558.9141497188 657447.8623166629 759607.3002411281 539021.7209434167 752209.0589586736 846563.2446679492 645031.257076147 621380.4587924457 641516.0574695631 628719.1894314354 0.6673232202903416 1.0456939653952784 1.2081821471491234 0.857333019262329 1.1964149839913631 1.3464886373732523 1.0259449177294286 0.9883274906152836 1.0203538690296698 1.0 19.26205627139298 4.731917928694516 4.766990851564381 1.080596070161521 0.6458692293811706 0.468546568629982 0.1311474601748969 0.15460592164379863 9.989883693582339 0.03229476496339283 0.22167763852470798 53940.86774998324 -4.731917928694516 -0.4347268407803503 S(ph)RSPHEAGFCVYLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 S(0.5)RS(0.5)PHEAGFCVYLK;S(0.5)RS(0.5)PHEAGFCVYLK 114.96 0.00027072 943610000.0 296650.0 317770.0 284290.0 263250.0 292680.0 337000.0 294510.0 281570.0 379350.0 329440.0 True False 295052.86936091323 328346.7823539784 324315.5609070227 296577.4230083694 329951.06314972765 313703.9832126703 280263.42616254446 302582.1831834893 285864.27552957006 308414.85715222586 0.9566752785041173 1.0646269942563584 1.0515562184702036 0.9616184698326197 1.069828691770423 1.0171493880329956 0.9087221956503005 0.981088219865304 0.926882310953245 1.0 18.23451273976614 2.349634757884668 8.32565927677195 0.9542348201127169 1.0237957486359939 0.35975664362183146 0.04309540131627665 0.25070099395057477 17.464089807188607 0.014134598986183926 0.011804150162335655 223.68391632224737 -2.349634757884668 0.069560928523277 S(ph)RSPIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPIER 7 1 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 S(0.5)RS(0.5)PIER 73.84100000000002 0.028948 933830000.0 165510.0 191260.0 167040.0 197780.0 187360.0 173950.0 203640.0 150010.0 202530.0 196800.0 True False 164618.9125498896 197625.9734808887 190557.7800622922 222818.92772115985 211219.18543027557 161925.24593425525 193789.1552196551 161204.50793534535 152619.19526296 184240.05551104306 0.893502295650484 1.0726547651796778 1.034290722143592 1.2093945971906441 1.1464346601741846 0.8788818776954271 1.0518296614822702 0.8749699270780072 0.8283714138037277 1.0 17.491227225360486 2.733343817886395 24.883912169334966 0.9259626617250577 1.076953956547403 0.3573010391976381 0.0967089389783737 462.4644286430321 2205927.3744974053 0.0316749031245511 0.03070050055075475 541.1825913891964 -2.733343817886395 0.1509912948223452 S(ph)RSPIIHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 S(0.756)RS(0.246)PIIHS(0.998)PK;S(0.816)RS(0.186)PIIHS(0.998)PK;S(0.833)RS(0.168)PIIHS(0.999)PK;S(0.5)RS(0.5)PIIHS(1)PK 73.279 0.02587 2701350000.0 5045510.0 4110140.0 3312980.0 3779210.0 3693100.0 4786050.0 4656330.0 4168790.0 6324660.0 4585800.0 True False 5018345.534768861 4246943.525267905 3779418.78706162 4257657.598508871 4163394.3942813324 4455201.628649852 4431085.52899203 4479886.278486687 4766032.289102021 4293130.317899092 1.1689245755821043 0.9892416979660218 0.8803410349097288 0.9917373299286242 0.9697805764067167 1.0377513140178964 1.0321339444362472 1.0435011161457093 1.110153183384927 1.0 22.03359853575846 2.6031570036447027 5.098492030843392 1.0472113536254695 0.9924475010161222 0.08560686381444493 0.07119757437362352 0.5322157154674013 19.91343718348156 0.023921992248777883 0.022409210519131466 401.01166285711724 -2.6031570036447027 -0.05476385260934724 S(ph)RSPIIHSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 S(0.5)RS(0.5)PIIHSPK 77.527 0.019768 304030000.0 427640.0 438370.0 428730.0 412700.0 409920.0 439010.0 426800.0 377160.0 544070.0 427140.0 True False 425337.633755271 452960.880449739 489091.45741203683 464947.7776849152 462120.8822138056 408662.27201838087 406154.05346566887 405305.5943796738 409991.23866448767 399879.5595070474 1.0636643550363192 1.1327432715193737 1.2230969195198815 1.1627195404988464 1.1556501732258742 1.0219633944834798 1.0156909594637855 1.0135691728762415 1.0252868117837917 1.0 18.609206011770144 2.7284720493257115 7.02562166016197 1.0156553199347373 1.151944563932052 0.7607557953622116 0.037051316159751484 0.07395764684882981 22.50339480404224 0.012427680019965923 0.012204373911806324 535.145711323968 -2.7284720493257115 0.13628924399731468 S(ph)RSPITTNHRPS(ph)PDPEQRPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 2 S(0.5)RS(0.5)PIT(0.166)T(0.107)NHRPS(0.727)PDPEQRPLR;S(0.5)RS(0.5)PIT(0.051)T(0.006)NHRPS(0.944)PDPEQRPLR 99.446 0.0011994000000000002 1204000000.0 226987.0 264780.0 204901.0 267250.0 209350.0 274410.0 216664.0 214470.0 278900.0 249900.0 True False 225764.92721262647 273593.0422371097 233749.27976858075 301083.82259824034 236009.48158533426 255440.68259165838 206183.13458314366 230474.8404565929 210168.83206853058 233951.16804984593 0.965008762702671 1.169445079149242 0.9991370494836675 1.286951568175505 1.0087980476979272 1.0918547007947994 0.8813084213335238 0.9851407983032068 0.8983448717971425 1.0 17.83584790610795 2.2540592411776275 24.610628511995778 0.9427063309243308 1.0921781077995454 0.36972624716658076 0.09301011044605938 194.77996797033393 309295.1352235099 0.030147565344038507 0.025134268253785667 179.49784592905212 -2.2540592411776275 0.14947177687521462 S(ph)RSPITTNHRPSPDPEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPITTNHRPSPDPEQR 18 2 P41212 P41212 ETV6 Transcription factor ETV6 1 S(0.498)RS(0.498)PIT(0.002)T(0.001)NHRPSPDPEQR;S(0.498)RS(0.498)PIT(0.003)T(0.001)NHRPSPDPEQR 67.979 0.015265 326240000.0 63015.0 73477.0 58405.0 56386.0 51903.0 72873.0 59428.0 59560.0 75019.0 59705.0 True False 62675.73424162466 75922.6375272156 66627.91633463946 63524.461818613156 58512.539396816755 67835.46103459023 56553.240602993836 64004.669639551845 56531.57265309834 55894.575783977816 1.1213205103095292 1.3583185212934172 1.1920283032855286 1.1365049457414873 1.046837525397042 1.2136322725976438 1.0117840561410043 1.1450962591954905 1.0113963986699246 1.0 15.770420664956898 3.3171780564076663 0.2936340697100208 1.0012662589742047 1.3147519262694813 0.41218456789711067 0.08213859620024375 3.323999246809861 0.4492408140563438 0.10455311543463486 0.35851089178466744 2075.7643857220223 -3.3171780564076663 0.3134856672952766 S(ph)RSPITTNHRPSPDPEQRPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 1 S(0.5)RS(0.5)PITTNHRPSPDPEQRPLR 102.07 0.0003357 216090000.0 95327.0 112350.0 92832.0 100840.0 90853.0 108260.0 96117.0 90012.0 124500.0 104180.0 True False 94813.77002382532 116089.50183299092 105901.93868979103 113606.33366064193 102422.59102207959 100776.24101662819 91467.45350740316 96729.15251167475 93818.64321452873 97531.14320701471 0.9721384052945874 1.1902813605556244 1.085826898029985 1.1648211014968504 1.0501526758963804 1.03327242666197 0.937828169544357 0.9917770809510794 0.9619352355523402 1.0 16.57357534688459 2.7087979387684413 2.089307023748343 0.9742169133738635 1.1069433232092705 0.4855733421032672 0.058030840948477935 0.24365474725249803 2.0996419527564534 0.019799912252980712 0.019193239610957574 511.4438241957815 -2.7087979387684413 0.13272640983540696 S(ph)RSPLDKDTYPPSASVVGASVGGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPLDKDTYPPSASVVGASVGGHR 25 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 S(0.498)RS(0.498)PLDKDT(0.004)YPPSASVVGASVGGHR 95.963 0.0049668 848620000.0 139200.0 174140.0 171940.0 192970.0 204170.0 223050.0 217170.0 208550.0 231270.0 229710.0 True False 138450.562666574 179936.14463014723 196147.65747072882 217399.98221434004 230169.83928959974 207631.07850322273 206664.65743003582 224113.05999544216 174276.6073592295 215049.71113537482 0.6438072478015034 0.8367188390077704 0.9121037942118088 1.010928966454113 1.070309920782487 0.9655027082204168 0.961008765549745 1.0421453663537448 0.8104014947944829 1.0 17.714310667826595 4.637398163988123 1.4321088965642215 0.9858943966267116 0.548612687741477 0.7037648159350354 0.0668694614565358 0.5084236188252763 1.099644986768813 0.01788712065570693 0.30192498815335483 43390.850620891026 -4.637398163988123 -0.43728170888523465 S(ph)RSPLGFYVHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 S(0.604)RS(0.393)PLGFY(0.002)VHLK 87.429 0.006391399999999999 851570000.0 744610.0 837660.0 746680.0 588670.0 570580.0 715030.0 802080.0 624680.0 1053800.0 742420.0 True False 740601.1024939475 865541.0067238379 851806.0537410951 663195.5616423051 643239.9809073791 665601.6590995708 763280.3261568503 671296.7936607661 794105.1101965505 695038.1199822598 1.0655546526179753 1.245314439366189 1.2255530009819269 0.9541858821487842 0.9254743911367007 0.9576477030016133 1.098184839381662 0.9658416917879271 1.1425346140968775 1.0 19.406732580332235 3.7402117103414807 24.996927428118948 1.002946573255042 1.1854580781365367 0.5096857903646193 0.07742051558294157 110.85622239633267 1678311.3430399902 0.019992129779624702 0.033820297747131293 5498.088299407514 -3.7402117103414807 0.1825115048814947 S(ph)RSPLLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPLLK 7 1 A0A0U1RQD2;Q6ZUS6-6;Q6ZUS6;Q6ZUS6-5;Q6ZUS6-4 A0A0U1RQD2 CCDC149 Coiled-coil domain-containing protein 149 1 S(0.596)RS(0.404)PLLK;S(0.617)RS(0.383)PLLK;S(0.648)RS(0.352)PLLK 80.755 0.017595 809640000.0 1048790.0 1092170.0 977480.0 976760.0 983620.0 1161280.0 1260060.0 1129970.0 1525660.0 1215790.0 True False 1043143.4311715232 1128522.2182192924 1115100.6875915318 1100417.715850541 1108878.1766274972 1081003.4469590792 1199106.0839033513 1214294.0992713978 1149681.5357966113 1138197.2413098128 0.916487400699633 0.9914996955366131 0.9797077757000167 0.9668075759735668 0.9742407874327864 0.949750542107345 1.053513433685225 1.066857355825265 1.0100898983673363 1.0 20.11831915719898 2.2365706816531508 24.999999156927803 1.0418058785814812 0.9658062311211894 0.6113367786764885 0.02670948604268728 31.177568436941467 391681.6423628629 0.00947993177606138 0.007353100155462923 172.4132671684423 -2.2365706816531508 -0.07599964746029186 S(ph)RSPLLVTVVESDPRPQGQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR;S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR;S(0.582)RS(0.418)PLLVTVVESDPRPQGQPR 116.35 6.8855e-05 1162699000.0 443118.0 535363.0 518493.0 541082.0 551817.0 591870.0 498593.0 496567.0 650638.0 553424.0 True False 440732.30192303855 553182.2338212329 591492.3075780538 609582.9257216132 622087.6240743934 550955.4200121155 474474.1517797758 533623.3510561346 490296.983002527 518104.00650987565 0.8506637593713294 1.0677049914121608 1.1416478161644543 1.1765647786203597 1.200700276890323 1.0634069860288056 0.9157893894239395 1.0299541102775918 0.9463292637038918 1.0 18.982882214460975 2.426322322284669 7.9774036666857 0.9799998861535741 1.098042075135084 0.2459158120498196 0.09427771000196125 0.36101554958145105 49.68436887941133 0.03417832626667172 0.028602098263775553 266.883867365015 -2.426322322284669 0.11804218898150975 S(ph)RSPNRFDAHDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPNRFDAHDPR 13 2 Q96T58;A0A669KB49;F6WRY4 Q96T58 SPEN Msx2-interacting protein 1 S(0.5)RS(0.5)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR;S(0.582)RS(0.418)PNRFDAHDPR 84.14 0.005155699999999999 2640820000.0 1226060.0 1524230.0 1429260.0 1607760.0 1402500.0 1422760.0 1562400.0 1234760.0 1698880.0 1610190.0 True False 1219459.029188071 1574963.074133507 1630487.384649376 1811302.2511526537 1581100.0617312223 1324407.9500167922 1486820.7430523932 1326904.0611842354 1280213.7878256922 1507426.2956469858 0.8089675977588545 1.0448027068928996 1.0816365545418407 1.2015859457826723 1.0488738761536702 0.8785888595955251 0.9863306400756737 0.8802447356901981 0.849271232379707 1.0 20.523656033801725 2.7487557208485143 23.614681368275445 0.9146341228622291 1.0492014212820016 0.2524178831135103 0.10059162624876188 434.3831768935446 1006150.1458464599 0.03168487514216225 0.0332179853595397 560.7324901299075 -2.7487557208485143 0.13456729841977244 S(ph)RSPPPVS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPPPVSK 9 1 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 2 S(0.999)RS(0.043)PPPVS(0.957)K 125.03 0.006133100000000001 15403000000.0 1191000.0 966420.0 712500.0 789310.0 777540.0 1141000.0 1035200.0 1026800.0 1527300.0 958520.0 True False 1184587.7883325391 998586.7054867736 812813.8068389791 889236.5650702226 876555.110159354 1062125.3556250948 985123.4211519691 1103425.029984752 1150917.379771486 897346.4329697415 1.3201008493589046 1.1128218364695344 0.9057971113218736 0.990962389104641 0.976830216239252 1.18362910532783 1.0978183953902088 1.2296533305793609 1.2825786535558612 1.0 19.775305539445608 2.7173552694234107 23.94203485311757 1.1723277618710344 1.0516176948702534 0.12444349629170792 0.1253725401715244 859.7221809119424 970672.9096057185 0.04181831513741737 0.03947151715369268 521.6212426607361 -2.7173552694234107 -0.12071006700078102 S(ph)RSPPPVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPPPVSK 9 1 Q01130;Q01130-2 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 S(0.5)RS(0.5)PPPVSK;S(0.5)RS(0.5)PPPVSK 78.324 0.018225 1195630000.0 615800.0 749760.0 639670.0 592550.0 725870.0 775580.0 751360.0 693150.0 1060900.0 788070.0 True False 612484.6012218114 774715.3083605088 729729.9758886886 667566.7692444791 818305.2419314365 721965.9801189394 715013.8463260662 744876.372744382 799455.4103316751 737774.6978993289 0.8301783769025193 1.0500703135609843 0.9890959638036569 0.9048382536636818 1.1091533014908248 0.9785724316306837 0.9691493193815539 1.0096258042804582 1.0836037242913996 1.0 19.49282078686193 4.747274165693307 24.695988164000813 1.0071110524141342 0.8301782696363323 0.4829635138563495 0.05586229200419247 818.0869862351263 2318566.0611859346 0.012807481374639199 0.15079215849391905 55882.28626019356 -4.747274165693307 -0.1769327827778019 S(ph)RSPQWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.688)RS(0.312)PQWR 90.696 0.010265 751000000.0 122970.0 116430.0 144000.0 130900.0 133310.0 146330.0 125420.0 95785.0 115900.0 137530.0 True False 122307.94318325135 120305.3021665786 164273.94832956244 147471.92657852054 150286.23830972493 136214.5515237685 119352.95544907264 102932.9630863746 87337.99798043288 128752.7176546432 0.9499445558215024 0.9343903908053939 1.2758872303588866 1.1453888451045233 1.1672471156130595 1.0579547679074266 0.9269936792263773 0.7994624498915385 0.6783390639932113 1.0 16.974243358814203 2.0928149499379676 2.4207736623863503 0.8075165752834472 1.0992748175502194 0.4995545142526362 0.11921442547273982 0.23443401779718231 2.685776852728988 0.060499809898480576 0.036547901263000594 123.82688557786292 -2.0928149499379676 0.29175824226677216 S(ph)RSPRPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPRPSK 8 2 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 S(0.657)RS(0.343)PRPSK 48.74100000000001 0.086774 98674000.0 75092.0 90391.0 78209.0 73454.0 86040.0 70586.0 97867.0 86437.0 106060.0 84861.0 True False 74687.71301550553 93399.60979248672 89220.1473951857 82753.26886859165 96996.68400096546 65706.5559615714 93132.799321754 92887.36785819243 79922.93413118809 79445.0983268427 0.9401173211245212 1.175649747555654 1.1230415629687784 1.0416409647847487 1.2209272320604891 0.8270687222419945 1.1722913217200532 1.1692020000535124 1.0060146669134897 1.0 16.277670589208743 1.105097408200461 11.082159649163401 1.0000914751401355 1.0909258107669602 0.07031746015037532 0.1151743441678349 0.8862026499873895 83.44417901912742 0.10465296071060746 0.026171287128121053 12.737887479113656 -1.105097408200461 0.09083433562682464 S(ph)RSPSLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPSLNR 8 1 Q9UPX8;Q9UPX8-3;A0A2R8Y2H5;A0A087X158 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 S(0.638)RS(0.361)PS(0.001)LNR 56.043 0.07273500000000001 116650000.0 48963.0 47885.0 54516.0 60958.0 51120.0 61721.0 53627.0 47465.0 66690.0 72109.0 True False 48699.38864830073 49478.82327790625 62191.378938433445 68675.27654983544 57629.82898802139 57454.37254560596 51032.85713496581 51007.07932238634 50255.14310021624 67506.94188437922 0.7213982338543694 0.732944226130845 0.9212590172570716 1.0173068818234612 0.8536874487178726 0.8510883613126701 0.7559645824628084 0.7555827282140465 0.7444440778592732 1.0 16.042748244782807 -0.3977828815828326 10.208413634461575 0.9999999999857349 0.8183393411268035 0.26736727641508173 0.09081957161287926 0.0 0.0 0.09704580392678763 0.022873915347443877 0.4001447455801111 0.3977828815828326 -0.18166065885893135 S(ph)RSPSS(ph)PELNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.984)RS(0.016)PS(0.066)S(0.934)PELNNK 209.93 5.9128e-07 700500000.0 1660000.0 1261600.0 1004000.0 1075000.0 1126000.0 1548600.0 1415300.0 1354500.0 2047900.0 1374800.0 True False 1651062.7444433381 1303591.593346696 1145354.4730755591 1211094.8897777656 1269389.4256751188 1441548.9270122882 1346836.5320289615 1455579.668011636 1543222.4854540857 1287059.0869745042 1.2828181403267966 1.012845180566694 0.889900459634646 0.9409784694692549 0.9862712897347071 1.1200332149481529 1.0464449889359597 1.1309346111166303 1.1990300220650678 1.0 20.295646856393546 2.735341845015789 24.6041019306373 1.1047962536947364 1.0101202619517413 0.1043635536065225 0.10879164914606024 463.6517565684341 3544111.5260080425 0.03543419683841901 0.034701890164258356 543.6781069598901 -2.735341845015789 -0.09467599174299512 S(ph)RSPVDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 S(0.5)RS(0.5)PVDLR;S(0.5)RS(0.5)PVDLR;S(0.634)RS(0.366)PVDLR;S(0.5)RS(0.5)PVDLR 79.82 0.016380000000000002 2003780000.0 1703120.0 3057330.0 2631980.0 2544200.0 2819550.0 2403520.0 2627920.0 2238790.0 2366730.0 2533320.0 True False 1693950.5911544191 3159091.3808549866 3002539.906419732 2866295.459137299 3178602.9797178335 2237370.3196775005 2500797.469970715 2405859.87814527 1783481.104057204 2371641.3487156294 0.7142524277845738 1.332027451185148 1.2660176919439223 1.2085703686561002 1.3402544956636115 0.9433847663725192 1.0544585383135738 1.0144282057859093 0.7520028713544965 1.0 21.177454424253987 2.714926256007836 24.301504212495384 0.9672544959837677 1.1883323874076008 0.2617539556274928 0.18240893952536139 756.815900399302 778177.5630977594 0.05756915941509357 0.05430898720702374 518.7119532184314 -2.714926256007836 0.22107789142383316 S(ph)RSS(ph)S(ph)PVTELASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.993)RS(0.559)S(0.763)S(0.671)PVT(0.013)ELAS(0.001)R 106.19 0.0011359000000000002 770230000.0 491450.0 583140.0 393150.0 448100.0 514170.0 655370.0 499320.0 506190.0 672020.0 517650.0 True False 488804.08780522743 602549.4623844256 448502.1026789398 504829.41405527183 579646.501775645 610065.8144750375 475165.98401236604 543964.4681807377 506409.6756066477 484613.13381753775 1.0086480404579121 1.2433618082899343 0.9254848277550106 1.0417163275755248 1.1961015113426297 1.258871813211596 0.9805057908134849 1.1224715762357906 1.0449771998901636 1.0 18.886473979177918 0.9458272090294911 1.330375883387241 0.9995023841931062 1.1014184384163708 0.07636707032845358 0.10609750490112092 1.3946884077098762 4.993440282798326 0.09865366298232456 0.029863970180850127 8.827286229131277 -0.9458272090294911 0.10191605422326455 S(ph)RSSPSTDHYK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSPSTDHYK 11 1 Q13796 Q13796 SHROOM2 Protein Shroom2 1 S(0.377)RS(0.377)S(0.23)PS(0.01)T(0.004)DHY(0.002)K 58.11600000000001 0.065625 252290000.0 346700.0 314710.0 310100.0 290100.0 311760.0 417520.0 447460.0 381930.0 482650.0 398770.0 True False 344833.40572199086 325184.9321037879 353759.38456248096 326826.63025537704 351460.788053708 388657.82513636176 425814.65033680404 410431.55600124353 363707.374678653 373320.1571958268 0.9236935083071522 0.8710618107160247 0.9476032240523108 0.8754593716833207 0.9414460518116293 1.0410844891305708 1.14061521224915 1.0994090409802055 0.9742505666198695 1.0 18.510053882626003 2.7611318928252864 3.1541040017005892 1.0706237855742313 0.9057433535111186 0.6618494449893084 0.0495822748751487 0.13818118604882043 2.8221886732144172 0.016393610059895272 0.016633805091030483 576.9416507684477 -2.7611318928252864 -0.16488043206311276 S(ph)RSSSPVT(ph)ELASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.775)RS(0.216)S(0.015)S(0.417)PVT(0.572)ELAS(0.005)R 139.46 0.00097505 328510000.0 398900.0 411900.0 326780.0 326110.0 369200.0 404500.0 380150.0 356580.0 444420.0 407670.0 True False 396752.3667219565 425609.8425011919 372787.7835773221 367395.49256318866 416215.4315801545 376537.8670905789 361760.6921859747 383189.81027655106 334898.645922899 381652.15157615294 1.0395653871816062 1.1151773696113116 0.9767736983475066 0.9626448876179869 1.0905622563930575 0.9865996183580965 0.9478806570118098 1.0040289533127165 0.8774970730279639 1.0 18.541898799028353 3.8487552241990066 0.4159742602784488 0.9557368919647623 1.1008281564868139 0.2852075403932228 0.05536708813286467 3.4993421318860745 0.811058275961072 0.0480316878363232 0.23699639536263467 7059.195737687812 -3.8487552241990066 0.14509126452205157 S(ph)RST(ph)PVRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 S(0.982)RS(0.349)T(0.669)PVRDR 66.485 0.070184 493510000.0 330740.0 456250.0 329540.0 399970.0 440950.0 374820.0 398090.0 401670.0 466090.0 413110.0 True False 328959.33258866845 471436.0054410505 375936.367586972 450606.16099015204 497102.36878458556 348909.5756313745 378832.8658485196 431644.6550389322 351228.3647860222 386744.96611873474 0.8505846524390818 1.2189842059801104 0.9720523872870672 1.165124825055412 1.2853492930324786 0.9021696626925342 0.9795418144685404 1.1160963757868612 0.9081653170844154 1.0 18.561022988081902 S(ph)RSTERPDTNLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSTERPDTNLMR 13 2 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4 A0A590UJL1 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 S(0.459)RS(0.459)T(0.081)ERPDTNLMR 69.485 0.037472000000000005 632690000.0 100730.0 125500.0 110600.0 113770.0 125540.0 115490.0 131400.0 117000.0 142220.0 131000.0 True False 100187.68087215505 129677.19163364795 126171.51864756669 128173.27033489922 141526.77486612287 107506.44813421757 125043.6800032542 125731.13411396185 107171.78665036366 122639.46784525755 0.8169285355883033 1.0573854723282914 1.028800278282076 1.0451225252919725 1.154006759428349 0.8766056313116564 1.0196039023997576 1.025209390769742 0.8738768076325111 1.0 16.90406381644606 0.1540433573031809 7.704943972031266 0.9999998943202804 0.9985268921897544 0.0 0.09760253544759766 12104264.393286666 1570973.856041917 0.08911920987049073 0.021614583289776553 1.4257499246441936 -0.1540433573031809 -0.0014730021305259244 S(ph)RSTTPAPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSTTPAPK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.83)RS(0.119)T(0.051)TPAPK;S(0.652)RS(0.249)T(0.098)T(0.001)PAPK 110.31 0.001398 191951000.0 105044.0 210263.0 182707.0 156306.0 197632.0 196193.0 202400.0 173737.0 233670.0 183650.0 True False 104478.45477548557 217261.47684833242 208430.55748228717 176094.32357358473 222799.26374336143 182630.63969864525 192609.13875691514 186702.13715860993 176085.15951758178 171929.2997693247 0.6076826632555531 1.2636675490438762 1.2123038816649387 1.024225212397469 1.2958772241979017 1.0622426773311962 1.1202810632936697 1.0859239083106007 1.0241719110927163 1.0 17.391455900752906 4.748169369044042 24.795637214798248 1.1251753131164175 0.6076823531232948 0.7084860930451755 0.09874070526109945 609.0560249404925 1571648.849057569 0.022535753721545298 0.29316584390279726 55997.59420512897 -4.748169369044042 -0.5174929599931227 S(ph)RSWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSWDR 6 1 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06;Q86U06-4;G3V5J5;A0A0B4J267;G3V2B6;G3V5Y2 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 S(0.59)RS(0.41)WDR 60.019 0.07964199999999999 188780000.0 96294.0 149020.0 130320.0 142410.0 139900.0 132070.0 126300.0 96098.0 140990.0 125570.0 True False 95775.56380326924 153980.04061550784 148667.92323825398 160439.09139837377 157715.4357477347 122940.31175933935 120190.38648714621 103269.32073575644 106244.90366920819 117556.01509411442 0.8147227832331002 1.3098439964321063 1.264656029036299 1.3647884480426415 1.3416194451765737 1.045801966500092 1.0224094989177945 0.8784690485899835 0.9037810917982321 1.0 16.842988834988184 2.41939277296672 2.5100592923460066 0.9312387766934376 1.2331827591101758 0.4056935828248913 0.15170869112430282 0.26391521749423047 3.3974406036669054 0.0595567233390491 0.04823935145049555 262.65929422661594 -2.41939277296672 0.30194398241673825 S(ph)RSY(ph)SPAHNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 S(0.508)RS(0.556)Y(0.729)S(0.208)PAHNR 80.905 0.052307000000000006 530000000.0 343880.0 516410.0 414350.0 457900.0 587240.0 520440.0 549790.0 450260.0 476080.0 451660.0 True False 342028.58828865987 533598.3946735628 472686.87840523757 515870.09305045515 662021.5331558237 484463.20778398216 523194.557298243 483860.68757395295 358756.46314516384 422834.6721144193 0.8088943760886921 1.2619551561494722 1.117899996330784 1.220027890501043 1.565674663918479 1.1457509039204008 1.2373501791656911 1.1443259493228597 0.8484556418970395 1.0 18.689734155879783 1.3673305361868346 4.734909615061691 0.9277642353337403 1.2053026181379687 0.26139674863310747 0.17748144117643885 0.26865278360364586 8.86577259156097 0.1267084979380941 0.04420075361984906 23.298638137272892 -1.3673305361868346 0.2775383828042284 S(ph)RSY(ph)T(ph)PEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSYTPEYR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 S(0.998)RS(0.507)Y(0.676)T(0.82)PEYR 100.69 0.0096655 861940000.0 742770.0 888780.0 592080.0 751520.0 740580.0 1020400.0 884500.0 897020.0 915000.0 730910.0 True False 738771.0088495051 918362.5050211439 675439.7175483839 846662.3549449176 834888.4732384365 949862.1497632302 841713.3558818749 963960.1873752655 689510.5103718388 684262.6980364668 1.0796599185801785 1.3421197847792092 0.9871058578621908 1.2373352476679884 1.2201285787376681 1.3881542169241683 1.2301026466841203 1.408757470108202 1.0076692947758674 1.0 19.384190776733305 4.782719292728878 21.65010664541951 1.2254085350075188 1.0796570591287191 0.03692878319646853 0.15130241982988066 13724.045625335917 6727747.12166003 0.034582034408244824 11.667949482893109 60634.42908303087 -4.782719292728878 -0.14575147587879966 S(ph)RT(ph)PLLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)RT(1)PLLPR;S(1)RT(1)PLLPR 85.885 0.037639 2088180000.0 164106.0 134456.0 112007.0 110992.0 132677.0 180622.0 148605.0 145764.0 197044.0 129671.0 True False 163222.4715298905 138931.28667963162 127776.61201770339 125043.57581973395 149572.62951180973 168136.02627845365 141416.40842377144 156641.6498545942 148485.14645432628 121395.28576307153 1.3445536249937542 1.1444537224516715 1.0525665079539115 1.030052979683106 1.2321123392199285 1.385029288588739 1.1649250424746753 1.2903437631038932 1.2231541407969195 1.0 16.88935287182699 3.0457560871242397 24.976486814737463 1.2390373656104954 1.1358789504069386 0.05975298315183808 0.12189688638602987 245.99194309118894 134275.87937030144 0.03442083512073583 0.04114074784434524 1111.107520526007 -3.0457560871242397 -0.10315841520355673 S(ph)RT(ph)PPVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTPPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)RT(1)PPVTR;S(0.999)RT(0.996)PPVT(0.005)R 77.279 0.077055 9682200000.0 735030.0 593800.0 512900.0 521870.0 593410.0 609450.0 586110.0 591750.0 970210.0 618620.0 True False 731072.6801495111 613564.2740403197 585111.8617932812 587938.6884914632 668977.2460833687 567320.1559909845 557757.6201423691 635909.3898456151 731114.7456479359 579139.1419727716 1.2623437567338225 1.0594419019068246 1.0103130998885073 1.0151941837132903 1.1551235231736776 0.9795921478532308 0.9630805098795968 1.0980252304816804 1.26241639126217 1.0 19.143550481231088 4.738393736925117 8.946649536836569 1.0581638855941673 1.2632752009790098 0.3271303586529858 0.0868578155009915 0.0962347216066667 151.91764854867532 0.02064378516724509 0.1202712892221022 54751.211943063914 -4.738393736925117 0.2051113153848425 S(ph)RT(ph)SPAPWK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.908)RT(0.556)S(0.536)PAPWK 74.987 0.090599 7887600000.0 3459000.0 2587700.0 1745600.0 2228700.0 2043600.0 2756200.0 2623700.0 2753300.0 3713100.0 2729500.0 True False 3440377.1283310265 2673830.030202318 1991365.3069728073 2510853.1914862394 2303840.346633811 2565670.3813969223 2496781.6074926755 2958765.2269741115 2798056.257990902 2555300.9731574846 1.3463686526444234 1.0463855562573405 0.7793075367212637 0.9826056569702931 0.9015925602638685 1.004057998783065 0.9770988363877547 1.157893045889652 1.0950006623029827 1.0 21.28506179665503 -0.17194918108874846 8.052911116946861 1.0000000020487134 1.026257269152203 0.002960639315418123 0.14362115441547849 0.0 0.0 0.14192561525779204 0.033452188324285904 0.6730554091661158 0.17194918108874846 0.026257267103489523 S(ph)RT(ph)SVQT(ph)EDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 3 S(0.975)RT(0.917)S(0.109)VQT(1)EDDQLIAGQSAR 202.28 8.2638e-16 428190000.0 334220.0 321690.0 222970.0 253540.0 263710.0 412590.0 308910.0 314100.0 465030.0 290710.0 True False 332420.596655333 332397.25718428846 254362.2379100176 285638.138003958 297291.90536837064 384068.6244323902 293966.843149203 337539.73696748196 350429.5875827501 272156.63891064696 1.2214311507736968 1.22134539328074 0.934617060704988 1.0495358083024284 1.0923558821064658 1.411204319577468 1.0801384244229906 1.2402406875633898 1.2876025695548117 1.0 18.054077703616283 S(ph)RT(ph)SVQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.997)RT(0.576)S(0.427)VQTEDDQLIAGQSAR 346.04 2.940799999999998e-90 3542600000.0 383670.0 360450.0 359230.0 389210.0 375300.0 507930.0 395700.0 376640.0 561060.0 421580.0 True False 381604.3633497445 372447.360353374 409806.46151686524 438483.94609339925 423092.2304226222 472817.99463861005 376558.47927920584 404746.7893391678 422794.2808188238 394674.4034672032 0.9668839934826309 0.9436825826084355 1.0383406116959382 1.1110017326721229 1.0720032176035972 1.1979950827439472 0.9540990648776574 1.0255207476934887 1.071248292528191 1.0 18.59030343099141 4.156655187248898 4.755013290218237 1.0608252191652574 0.9552932271356153 0.31339462924060335 0.06188704089730294 0.2374256839070054 9.477793202032482 0.016086321833809234 0.03745439974973631 14343.501634851 -4.156655187248898 -0.10553199202964214 S(ph)RTGSESSQTGTSTTSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.495)RT(0.495)GS(0.01)ESSQTGTSTTSSR;S(0.491)RT(0.491)GS(0.018)ESSQTGTSTTSSR 142.22 6.9207e-08 539180000.0 45805.0 66877.0 52011.0 59478.0 54954.0 58199.0 64617.0 49371.0 65529.0 60467.0 True False 45558.39096941394 69102.96051699985 59333.696712283796 67007.90870158319 61952.066162123025 54175.840115709754 61491.22884908881 53055.31472085821 49380.2559936133 56607.944291596774 0.8048056070493431 1.2207290227859044 1.0481514115164865 1.1837191676916317 1.0944058636540095 0.9570359919208715 1.0862650042958182 0.9372415017857142 0.8723202478303668 1.0 15.788716912921581 1.6787504375964757 5.161715381009184 0.926184841874603 1.06493711553221 0.1868323978250347 0.11304215441494783 0.21735966872616225 13.13278150826787 0.05710422608673459 0.02788748717647705 47.725494569820526 -1.6787504375964757 0.138752273657607 S(ph)RTPLISR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTPLISR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.919)RT(0.081)PLISR;S(0.976)RT(0.024)PLISR;S(0.944)RT(0.056)PLISR 110.08 0.0021168000000000003 681270000.0 88506.0 155014.0 180741.0 161597.0 165982.0 146432.0 210971.0 145842.0 142013.0 150458.0 True False 88029.49352994109 160173.54728205813 206187.76177106533 182055.1636310862 187118.82384760893 136309.50050385096 200765.52674251547 156725.4706106701 107015.7990267059 140855.6416264255 0.6249624971601148 1.137146836524072 1.4638232405196263 1.2924946528867425 1.3284439422304555 0.9677248204609956 1.4253282610786848 1.1126673294800236 0.759755149250827 1.0 17.10385782290981 1.3927363282987546 6.305258486411417 0.8873451062365475 1.194706094362892 0.19341841639043522 0.237045151715052 0.32157391728286 17.93951524056875 0.15956923640132192 0.058386741464214555 24.70223951165807 -1.3927363282987546 0.3073609881263445 S(ph)RTPLLPR ddPTM_BT-474_Trastuzumab_2h_R1 6 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.981)RT(0.019)PLLPR;S(0.962)RT(0.038)PLLPR;S(0.984)RT(0.016)PLLPR;S(0.964)RT(0.036)PLLPR;S(0.944)RT(0.056)PLLPR;S(0.944)RT(0.056)PLLPR 136.02 0.00048978 2241740000.0 291530.0 480774.0 451310.0 409750.0 378658.0 377951.0 466939.0 315989.0 440526.0 374431.0 True False 289960.43487202795 496776.27195598016 514850.52514315833 461624.3079873864 426877.85181819607 351824.13697095565 444351.37668979843 339569.70373962953 331964.2700459719 350534.49301349296 0.8271951566856692 1.4171965437274614 1.4687585256362787 1.3169155024342136 1.2177912882364033 1.0036790786161323 1.2676395206354036 0.9687197993566888 0.9470231222956816 1.0 18.419196888575897 2.1578108346488425 0.9288785857241418 0.9652314938938037 1.273746576708316 0.25603839992958777 0.18114156137794954 0.7430512412824122 1.202485955167305 0.1410154753234494 0.07579570494357704 143.81720182058993 -2.1578108346488425 0.30851508281451234 S(ph)RTPPSAPSQSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.5)RT(0.5)PPSAPSQSR;S(0.5)RT(0.5)PPSAPSQSR;S(0.5)RT(0.5)PPS(0.001)APSQSR;S(0.5)RT(0.5)PPSAPSQSR 77.068 0.017816 25059606000.0 878466.0 915567.0 833856.0 841606.0 866239.0 871778.0 903214.0 802423.0 952306.0 844170.0 True False 873736.4366627485 946041.0941230608 951255.6767937191 948153.2333081926 976549.4020491914 811514.0388046738 859522.0882074528 862303.8788814333 717622.9465466279 790294.3478697021 1.1055835575921436 1.197074351693373 1.2036726307835812 1.1997469498092843 1.235678079542836 1.026850364034832 1.0875974129441255 1.0911173554585558 0.9080451460661898 1.0 19.592030564587475 2.0243536748924718 0.8654576231412897 0.9771824751512725 1.1877670793815565 0.6398689050436858 0.06021591236161884 0.3934742454891073 0.546357583139551 0.05079903663884404 0.025509662583431528 105.76784965590029 -2.0243536748924718 0.2105846042302839 S(ph)RTPS(ph)ASNDDQQE ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 S(0.762)RT(0.238)PS(0.563)AS(0.436)NDDQQE 129.88 0.0017766 140990000.0 180560.0 151110.0 142950.0 155790.0 178610.0 172290.0 145930.0 148870.0 211600.0 156350.0 True False 179587.885022102 156139.6050020761 163076.11745632585 175512.99802649126 201354.92479558868 160379.99782703546 138870.80839326375 159979.4353465426 159454.0152947334 146371.60914203065 1.2269311383182253 1.0667342247400393 1.1141239644232244 1.199091811965963 1.375641942968635 1.0957042746685381 0.948755084454332 1.0929676614493435 1.089378030544218 1.0 17.15927622394629 2.486349205580358 24.98586801737814 1.040284887331597 1.189943275517143 0.45370042926490206 0.0848828718272979 464.0732070515493 1256542.034990511 0.03004653385090054 0.02642869652138857 306.4426473767187 -2.486349205580358 0.149658388185546 S(ph)RTPSAS(ph)NDDQQE ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 S(0.999)RT(0.001)PS(0.266)AS(0.734)NDDQQE 180.7 0.00015162 153090000.0 229550.0 186080.0 169670.0 189440.0 200020.0 212650.0 177180.0 182320.0 249980.0 181380.0 True False 228314.12830540247 192273.56031226474 193558.06120192257 213423.08457627904 225491.36138857665 197950.00602425632 168609.12650667096 195925.64420220087 188375.77856038493 169804.17311276935 1.3445731286814477 1.132325294411776 1.139889895835351 1.256877735475569 1.327949468231412 1.1657546595912864 0.9929622070871913 1.153832915944203 1.1093707245656554 1.0 17.373512389482748 2.4727662192193463 24.595436339264886 1.0817673318004184 1.2313821842201798 0.5229390157431326 0.07842078938152547 94.88178258013083 535843.4216236148 0.027415480883627052 0.02302871011066376 297.0066813963632 -2.4727662192193463 0.14961485241976136 S(ph)RTPSLPTPPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTPSLPTPPTR 12 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 1 S(0.899)RT(0.097)PS(0.003)LPTPPTR 51.76 0.092934 236910000.0 246400.0 233630.0 224220.0 235420.0 241160.0 247370.0 243070.0 237970.0 322790.0 284180.0 True False 245073.40977761347 241406.2333176829 255788.22704482282 265224.14786184375 271870.2965326922 230269.89414634503 231311.77548242756 255728.52978717486 243242.7296643998 266043.3891012613 0.921178348409679 0.9073942191655023 0.9614530468466738 0.9969206480108939 1.0219020944332247 0.865535110360137 0.8694513186884182 0.9612286576677146 0.9142972147743048 1.0 18.02130202894688 2.7318972844521285 24.999886300957964 0.9188214220821921 0.9606840547176706 0.14336732505685623 0.0481118306409899 1084.1261781769217 4067476.9364413945 0.016200024936077386 0.01557860224373354 539.3830372504524 -2.7318972844521285 0.041862632635478514 S(ph)RTPSLPTPPTREPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTPSLPTPPTREPK 15 2 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 1 S(0.699)RT(0.299)PS(0.002)LPTPPTREPK 100.97 0.0010191 200220000.0 224800.0 196100.0 171030.0 174860.0 171370.0 214900.0 245490.0 197800.0 382800.0 291790.0 True False 223589.70177762813 202627.06995504667 195109.53738059066 196997.25807120014 193192.953710431 200044.46882018636 233614.71083712953 212560.84040804824 288464.06925720186 273167.71238601254 0.8185070622902685 0.7417680083241862 0.7142481652622324 0.7211586477424676 0.7072320224925799 0.732313738958666 0.8552061617992731 0.7781331056712848 1.0559962110367351 1.0 18.059427445863673 1.2871855665896905 4.450658371443535 1.031038807664908 0.7554296095482491 0.8375728526570507 0.04734416544435305 0.07588201823108157 2.8523244687184683 0.039816393971194255 0.012789300628711068 19.37249540659768 -1.2871855665896905 -0.27560919811665885 S(ph)RTS(ph)PAPWK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.926)RT(0.357)S(0.717)PAPWK;S(0.964)RT(0.201)S(0.835)PAPWK;S(0.999)RT(0.007)S(0.995)PAPWK;S(0.957)RT(0.05)S(0.994)PAPWK 115.37 0.017774 8260100000.0 10219500.0 7472200.0 5141850.0 6352800.0 5931200.0 8464300.0 7815200.0 8042200.0 10796900.0 8396900.0 True False 10164479.347493181 7720907.659959709 5865777.786238603 7157063.828632748 6686503.163023326 7879182.863819009 7437148.9190367665 8642349.801464135 8136148.666047752 7861002.6530522285 1.2930258131316839 0.9821784829142471 0.7461869745026826 0.9104517762570454 0.8505916430936613 1.0023127088959474 0.9460814666115283 1.099395354879893 1.0350013891534169 1.0 22.906281906023313 1.7542164396972173 24.99984302764189 1.0525352438543978 0.9493925583558023 0.06907338763549697 0.13409101779020893 13.10129774435123 20946.29410866333 0.06369819852644397 0.03532416111992298 56.78275235723497 -1.7542164396972173 -0.10314268549859551 S(ph)RTS(ph)PITR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.973)RT(0.031)S(0.99)PIT(0.006)R;S(0.965)RT(0.036)S(1)PITR 97.195 0.004782 2242500000.0 311290.0 288450.0 267460.0 257030.0 247480.0 291700.0 327840.0 316480.0 378600.0 276990.0 True False 309614.0492275706 298050.88387829263 305116.04319600505 289569.9716461204 278995.11107111786 271535.46558794036 311981.1267295803 340097.34465287736 285299.102980085 259312.26105693047 1.1939815262325628 1.1493898617191007 1.1766356205155244 1.116684457826493 1.075904046858263 1.0471370095698112 1.203109816165178 1.3115359191527431 1.1002144743069024 1.0 17.98433089716419 S(ph)RTS(ph)PVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.767)RT(0.234)S(0.999)PVSR;S(0.803)RT(0.198)S(0.998)PVSR;S(0.618)RT(0.392)S(0.989)PVSR 85.417 0.0095351 1042460000.0 61011.0 78237.0 56626.0 78883.0 65793.0 73315.0 73494.0 75462.0 78453.0 69901.0 True False 60682.52355495938 80841.07124973478 64598.44859798466 88869.57971194379 74171.34856433664 68246.90661494626 69938.81444565575 81093.35762827171 59119.30936634078 65439.858334743054 0.9273021840076642 1.2353491176006257 0.9871422439141853 1.3580344147041272 1.1334277067797058 1.0428950849166632 1.068749478152891 1.2392043578923515 0.9034143849139936 1.0 15.997882004663083 1.226513064295278 24.994912111333637 0.9517071164078367 1.1310966634655735 0.23580230434821192 0.12355089179461506 331.30967491298554 687342.7418447393 0.10740740877875511 0.027688195474399397 16.846631034602975 -1.226513064295278 0.1793895470577368 S(ph)RTS(ph)PVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.798)RT(0.203)S(0.997)PVT(0.002)R;S(0.984)RT(0.018)S(0.998)PVTR;S(0.735)RT(0.274)S(0.99)PVT(0.001)R 93.772 0.0061634 4742000000.0 285727.0 238216.0 158375.0 254906.0 217171.0 224651.0 275382.0 264809.0 245786.0 216838.0 True False 284188.6775792541 246144.87555538694 180672.8233798226 287177.0734638989 244826.43957663522 209121.4051415713 262060.7205986007 284570.3922528557 185215.33366366423 202999.2131956481 1.3999496505701063 1.2125410324529464 0.8900173578785864 1.4146708696211607 1.2060462487639032 1.0301586979059998 1.290944513888484 1.4018300257084757 0.9123943425591311 1.0 17.631114610118512 1.2207286113170626 24.998584260274523 0.9561969040878463 1.2290959849724197 0.3198252470182943 0.1601513357514103 337.6714704356552 473367.0267833005 0.1534083974492292 0.03867954437787421 16.623735159399093 -1.2207286113170626 0.2728990808845734 S(ph)RTS(ph)VQT(ph)EDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 3 S(0.642)RT(0.406)S(0.946)VQT(0.996)EDDQLIAGQS(0.01)AR 143.75 1.022e-06 428390000.0 701060.0 659070.0 385730.0 567900.0 549060.0 935860.0 610840.0 640820.0 1006400.0 640650.0 True False 697285.570855089 681006.746533771 440037.4311747365 639796.0817719015 618979.536466413 871166.2009774755 581291.3355645951 688641.2424180255 758386.2050690914 599763.1685119398 1.1626015191714925 1.1354594318010607 0.7336853182673828 1.0667478687617422 1.03203992669665 1.4525170045685003 0.9692014549790131 1.1481886160609016 1.2644761213842257 1.0 19.194033403384545 2.9626710264966563 24.997468471651363 1.1655990081366114 1.0164632177048145 0.15138952090771518 0.16625437167389168 1054.4350106469626 706105.6998202417 0.05019172140042498 0.05324954981123247 917.6372325968708 -2.9626710264966563 -0.14913579043179692 S(ph)RTS(ph)VQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.993)RT(0.449)S(0.558)VQTEDDQLIAGQSAR 300.72 3.6632999999999996e-50 4087700000.0 518540.0 619980.0 456330.0 543080.0 583970.0 805180.0 587940.0 591030.0 749740.0 628820.0 True False 515748.2382552102 640615.6595141761 520577.29750853527 611833.8723167528 658335.1180386319 749519.8017898458 559499.0960510896 635135.659789529 564976.6230012914 588688.1692401125 0.8760975083310163 1.0882088225776514 0.8843005936071455 1.0393174252278878 1.1183087285216222 1.273203439364744 0.9504167491140503 1.0788999898016833 0.9597213814073615 1.0 19.167144108796958 3.4943911133893484 22.34854484793206 1.070639826478323 0.9631372400742549 0.1945070813924369 0.10225120006102283 307.8166300369549 398336.5069913435 0.02705390371812047 0.04075109228656423 3121.6996334235255 -3.4943911133893484 -0.10750258640406807 S(ph)RTSPAPWK ddPTM_BT-474_Trastuzumab_2h_R1 5 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.796)RT(0.182)S(0.022)PAPWK;S(0.825)RT(0.156)S(0.018)PAPWK;S(0.43)RT(0.43)S(0.14)PAPWK;S(0.995)RT(0.004)S(0.001)PAPWK;S(0.333)RT(0.333)S(0.333)PAPWK 103.43 0.0020734 11788220000.0 7395110.0 9532280.0 8628050.0 7557980.0 8580810.0 10475300.0 10601420.0 8713540.0 10481420.0 8626610.0 True False 7355295.549433966 9849556.177415054 9842804.443644987 8514819.49306285 9673525.291054448 9751167.167203812 10088588.813242769 9363788.601259582 7898414.484832348 8076052.364187602 0.9107538210190718 1.219600336061696 1.2187643169937654 1.0543294061367054 1.1978036861116292 1.207417526221639 1.249198043586189 1.1594511995467376 0.9780043675616852 1.0 22.94521883429134 1.2412172371183032 24.49116634258403 0.9890021032382795 1.1613388988002444 0.3122083034109584 0.09610078424688742 54.639980503540976 503775.0531274454 0.0686381448831004 0.02247763149340548 17.42678355238145 -1.2412172371183032 0.1723367955619649 S(ph)RTSPVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.451)RT(0.274)S(0.274)PVSR 72.652 0.027615 1051700000.0 95601.0 141930.0 161480.0 117790.0 154110.0 126660.0 149840.0 157510.0 149950.0 123490.0 True False 95086.29483826969 146654.05425150334 184214.98039067845 132702.20192271928 173734.99501846582 117904.29232556916 142591.66675561326 169264.19601957384 112996.83172705688 115608.76247489192 0.8224834588893785 1.268537532207854 1.5934344114330135 1.147855915779219 1.502783969824068 1.0198560195744313 1.233398435404769 1.4641121693205121 0.9774071558944133 1.0 16.818891224351365 2.716335575343904 24.8179338532138 1.199705575095712 1.2786175126585895 0.03712790281124556 0.2381826221603655 3780.436380378553 4221476.44239424 0.07776736980675016 0.07337550488774933 520.3979479200555 -2.716335575343904 0.07891193756287751 S(ph)RTSPVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.382)RT(0.382)S(0.235)PVTR;S(0.505)RT(0.181)S(0.313)PVTR;S(0.549)RT(0.291)S(0.16)PVTR 82.417 0.01231 21766900000.0 770990.0 1079220.0 884780.0 1096870.0 1125400.0 1022670.0 1007870.0 919030.0 973240.0 973410.0 True False 766839.0755050427 1115141.1852977327 1009349.333354375 1235733.6295353854 1268713.019231599 951975.2300062361 959115.4776627077 987612.6853397811 733398.0427478559 911286.1404217717 0.8414909889336467 1.2237003679015799 1.1076096613158373 1.356032506939532 1.3922224457889802 1.0446501793230745 1.0524855312940447 1.0837569469482802 0.8047944659933227 1.0 19.797544600417794 1.7866441882869406 1.3416594496728211 0.9276891718399889 1.1805927843676074 0.26120550984095114 0.15731890404615803 0.5724353993763251 1.9417992130629467 0.12683478075635973 0.050864693440750494 61.18489066227784 -1.7866441882869406 0.2529036125276185 S(ph)RTSVQT(ph)EDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.871)RT(0.13)S(0.075)VQT(0.924)EDDQLIAGQSAR 248.95 1.5087999999999995e-23 998340000.0 676470.0 691460.0 588480.0 658510.0 677810.0 808440.0 722420.0 687950.0 920460.0 693720.0 True False 672827.9606828823 714474.8281036038 671332.8688401441 741877.298481448 764125.0858053756 752554.4456630603 687473.7846876009 739288.3223393168 693624.96653209 649446.1956764271 1.036002620636036 1.1001293607693652 1.0337005179326997 1.1423229567289246 1.1765795086527613 1.1587633443279184 1.0585538713820108 1.1383365200396858 1.0680252977841356 1.0 19.308850482871918 3.7384331700221747 24.999999984455542 1.115259979123532 1.0609626858366585 0.13598807462520057 0.05343162017330577 19.90231669466545 3904009.6730090515 0.013477071180737215 0.02235124365519199 5475.618347266993 -3.7384331700221747 -0.054297293286873494 S(ph)RTSVQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 S(0.556)RT(0.291)S(0.154)VQTEDDQLIAGQSAR;S(0.528)RT(0.236)S(0.236)VQTEDDQLIAGQSAR 275.67 1.1568e-39 1303210000.0 174429.0 249817.0 225090.0 225134.0 265060.0 279270.0 250990.0 214750.0 268730.0 261440.0 True False 173489.8936448839 258132.00782743463 256780.71548264698 253635.94131649105 298813.8198662941 259964.7222308676 238848.65482508973 230775.73547840444 202505.09229751275 244754.6753699551 0.708831785879669 1.054656085475218 1.0491350781941717 1.036286399567696 1.220870732763845 1.0621440503145527 0.9758696313525442 0.9428859127188438 0.8273798733013755 1.0 17.90097689327957 -1.111893031148962 5.61603217852191 1.0000000346108064 0.9966191728844682 0.0 0.13306513121066058 5.798777984875667e-08 9.253134128728166e-09 0.12916061473621207 0.030443135833836024 0.0772870923535576 1.111893031148962 -0.0033808617263382246 S(ph)RWSGSHQFEQLSGSILWMAPEVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRWSGSHQFEQLSGSILWMAPEVIR 25 1 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y492;H7C4S5 P15056 BRAF Serine/threonine-protein kinase B-raf 1 S(0.552)RWS(0.356)GS(0.092)HQFEQLSGSILWMAPEVIR 235.35 1.2569999999999998e-38 359470000.0 109170.0 104740.0 92965.0 116430.0 81329.0 154980.0 131790.0 111400.0 153570.0 137560.0 True False 108582.24084992713 108226.20758333291 106053.66393373437 131170.026062163 91685.76607525027 144266.59738367848 125414.81421330957 119713.23367773804 115724.73123257191 128780.80302895897 0.8431554882097623 0.8403908427174202 0.8235207533989833 1.0185526334438741 0.7119521226671717 1.1202492451552521 0.9738626508262067 0.9295891224627486 0.8986178724677534 1.0 16.974558025660677 2.7390878301093693 24.999986796213154 0.9750957424117009 0.8552877698186286 0.37114466626965115 0.08842499452204926 59.975119853259656 2844006.562568066 0.027146176609761607 0.027243987773117876 548.3878576388046 -2.7390878301093693 -0.1198079725930723 S(ph)RWSGSQQVEQPTGSVLWMAPEVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRWSGSQQVEQPTGSVLWMAPEVIR 25 1 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 S(0.409)RWS(0.296)GS(0.296)QQVEQPTGSVLWMAPEVIR 132.51 4.2267e-05 91567000.0 17630.0 17790.0 15328.0 16831.0 17760.0 19371.0 21178.0 18816.0 29434.0 19133.0 True False 17535.082038877135 18382.129395717897 17486.049166635625 18961.80287427869 20021.630728232787 18031.928364429194 20153.539232183524 20220.145465712 22180.3850953931 17911.915559414592 0.9789618525563342 1.0262514544993016 0.9762244081954077 1.058613904882567 1.1177827777168878 1.0067001658542054 1.1251470656688487 1.1288656089652116 1.2383033529730425 1.0 14.128632011696894 3.193671036462505 0.7264707553118284 1.1293075231669176 0.9850793415408053 0.3437198866230262 0.065293974241701 0.779650106397713 0.9022786296853793 0.03749166794050848 0.0642092792675539 1561.964058927485 -3.193671036462505 -0.14422818162611228 S(ph)RYMELYDLNR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRYMELYDLNR 11 1 J3QKP7;J3QLW0;H3BRL0;Q9BXC9 J3QKP7 BBS2 Bardet-Biedl syndrome 2 protein 1 S(0.382)RY(0.309)MELY(0.309)DLNR;S(0.382)RY(0.309)MELY(0.309)DLNR;S(0.401)RY(0.3)MELY(0.3)DLNR 84.65799999999999 0.023963 2434210000.0 872700.0 1060830.0 961460.0 968390.0 984460.0 1107140.0 1060500.0 806810.0 1132090.0 916570.0 True False 868001.4801660847 1096139.0852647224 1096825.210839867 1090988.0747087363 1109825.1456484252 1030606.0177272271 1009199.563496582 867018.2590981678 853101.5887288034 858073.7178849425 1.0115698244500635 1.2774416258390768 1.2782412372953462 1.271438632799408 1.2933913747923922 1.2010693210223915 1.1761222170796095 1.0104239775986525 0.9942054755290782 1.0 19.710742070714645 1.821964855546165 2.267626018849737 0.9915747163931159 1.232915485388826 0.6217575743153811 0.0769832271208827 0.18232277387865642 1.7832155035294528 0.047242402558801265 0.02191766239240017 66.36893604312517 -1.821964855546165 0.2413407689957101 S(ph)S(ph)KSFSLDEPPLFIPDNIATIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSKSFSLDEPPLFIPDNIATIR 22 1 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 2 S(0.659)S(0.695)KS(0.621)FS(0.026)LDEPPLFIPDNIATIR 88.001 0.0015641 26548000.0 33688.0 18597.0 19297.0 19094.0 21298.0 31306.0 23838.0 26359.0 51490.0 27220.0 True False 33506.627551088655 19215.989902876106 22013.849867469187 21511.298442248077 24010.174056863845 29141.889906397177 22684.86486999673 28326.04242828991 38800.979430651314 25482.79629578556 1.3148724795414273 0.7540769733364826 0.8638710450748265 0.8441498410363111 0.942211120717342 1.143590741304037 0.8902031239698933 1.1115751230556505 1.52263428943504 1.0 14.63723597663788 1.5069041144065665 5.035486036625339 1.279514736114287 0.9562777753794686 0.2747333693955617 0.19214702878515727 0.17228454654762856 9.643382666590737 0.10890048618876844 0.0465632365118983 32.12951089760663 -1.5069041144065665 -0.32323696073481833 S(ph)S(ph)QDVS(ph)LDS(ph)NSNSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSQDVSLDSNSNSK 14 0 Q96Q89-3;Q96Q89;Q96Q89-2;Q96Q89-4 Q96Q89-3 KIF20B Kinesin-like protein KIF20B 4 S(0.995)S(0.996)QDVS(0.996)LDS(0.996)NS(0.016)NS(0.001)K;S(0.976)S(0.98)QDVS(0.98)LDS(0.98)NS(0.08)NS(0.005)K 57.53 0.052419000000000014 1241680000.0 269510.0 400480.0 680130.0 425880.0 487220.0 565170.0 581640.0 826070.0 594240.0 860760.0 True False 268058.9881053763 413809.73470472806 775886.3922040646 479796.3643335403 549264.5790208101 526101.1281670764 553503.8511194274 887715.5380984648 447797.514408045 805825.559866288 0.33265138443840847 0.5135227216835766 0.9628465896922018 0.5954097117658489 0.6816172213648206 0.6528722274016392 0.6868780027420217 1.1016224631119482 0.5557003112216357 1.0 19.620108041287825 5.150480075859594 0.23806749766675708 0.9445249820982713 4.3536112650124735e-30 0.33277830115100504 0.18696624616415328 15.983814455925947 0.668324763680538 0.291264502724675 4.604829457090663 141409.9848882665 -5.150480075859594 -0.9445249820982713 S(ph)S(ph)SPFLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPFLSK 8 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(0.967)S(0.548)S(0.484)PFLSK 70.363 0.074581 0.0 789390.0 655950.0 536220.0 550220.0 544520.0 740050.0 649800.0 702920.0 1039500.0 644620.0 True False 785140.011949474 677782.8992198517 611715.115092207 619877.795584672 613861.3943771013 688892.0853903164 618366.6915229424 755375.4597554357 783329.1535863671 603479.7997130522 1.3010211979304016 1.1231244186501848 1.0136463811764214 1.0271724022567397 1.0172028867726566 1.1415329655075062 1.0246684177614043 1.251699659399715 1.2980205036835222 1.0 19.202945954876018 1.7274534778314878 11.610629881989974 1.2049448347424419 1.0872415815352054 0.11451381182406617 0.10984418797300335 0.15352405349048198 83.91775763736725 0.05083967274505517 0.02777244157014529 53.38920793230564 -1.7274534778314878 -0.1177032532072364 S(ph)S(ph)TPLHSPSPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 S(0.998)S(0.564)T(0.436)PLHS(0.002)PSPIR 79.82 0.032169 95203000.0 107940.0 153520.0 144290.0 150510.0 122070.0 133270.0 127850.0 106640.0 95004.0 161220.0 True False 107358.86303326138 158629.82039520025 164604.77780883716 169564.5505678619 137614.89093442427 124057.35858383558 121665.40706557117 114598.01830694769 71591.5371883783 150930.80157261362 0.7113118191558166 1.0510102559740437 1.0905976519951424 1.1234588884514967 0.9117747305424401 0.8219485836636925 0.8061005825046075 0.759275224890487 0.4743335120627132 1.0 17.203527731868206 2.6388318063941827 1.7721154073800875 0.7403239864139116 1.0038341136681443 0.3011480040683484 0.1595926996818133 0.4020275754113148 2.5204212989147434 0.06330739187143453 0.057346641368744136 435.34324126425014 -2.6388318063941827 0.26351012725423273 S(ph)SDEDAAGEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDEDAAGEPK 11 0 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 S(0.994)S(0.006)DEDAAGEPK;S(0.99)S(0.01)DEDAAGEPK 225.33 1.8958e-05 0.0 856580.0 568500.0 481340.0 461730.0 450670.0 650070.0 664290.0 626520.0 944400.0 658480.0 True False 851968.2684549853 587422.178834493 549108.4881177186 520184.9706577559 508060.15316963196 605132.1910001797 632155.7548657662 673274.1038040969 711665.2743116551 616455.2426469093 1.3820439985177841 0.9529032088562418 0.8907515909183932 0.8438325034340008 0.824163893858936 0.9816319971615277 1.0254690221328033 1.092170294331866 1.154447598265102 1.0 19.23363662688266 2.0179766372088546 2.631911728883863 1.090482082156447 0.9608044219476463 0.07775804183947088 0.1507999917443718 0.6355237580104863 8.411006060299519 0.07824803858995227 0.044991129603460855 104.22613596285572 -2.0179766372088546 -0.12967766020880067 S(ph)SDEENGPPSS(ph)PDLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 S(0.723)S(0.277)DEENGPPSS(1)PDLDR 513.07 3.740599999999996e-259 728050000.0 743870.0 764250.0 576430.0 590540.0 605410.0 738790.0 772000.0 720540.0 746050.0 712230.0 True False 739865.0865717274 789687.5992511191 657586.3335806221 665302.3034505689 682505.374953795 687719.1862245959 734655.4106736094 774310.3536279832 562195.9740578244 666774.8716292192 1.1096175306725602 1.1843391718130754 0.9862194296162579 0.9977915061870102 1.0235919258416855 1.03141137359331 1.1018042849733205 1.1612770465329751 0.8431571104113996 1.0 19.346840209746418 4.242052407721841 24.999978016058517 1.0348150613189029 1.1469783657888055 0.2721136821853841 0.08067623813260008 128.24015316760983 918113.8510661637 0.020434489430418812 0.051541826516733606 17460.328396464054 -4.242052407721841 0.11216330446990264 S(ph)SDELDAWTDFR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSDELDAWTDFR 12 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 S(0.987)S(0.013)DELDAWTDFR;S(0.997)S(0.003)DELDAWTDFR;S(0.992)S(0.008)DELDAWTDFR;S(0.991)S(0.009)DELDAWTDFR;S(0.803)S(0.197)DELDAWTDFR 240.37 3.4796e-16 3476820000.0 1221530.0 1093080.0 988850.0 1086230.0 974570.0 1238260.0 1019860.0 1107870.0 1441770.0 1248460.0 True False 1214953.4182047423 1129462.5070191852 1128071.484761721 1223746.6066263302 1098675.7127710497 1152662.0007505063 970525.4755564604 1190544.8850498693 1086465.1022282029 1168782.2139396176 1.0395036848734165 0.9663583972689853 0.9651682506010484 1.0470270611848582 0.9400174811590778 0.9862076843770792 0.8303732414656683 1.0186199540433596 0.9295701879018605 1.0 20.15657469838901 3.2023584489873653 24.99982343760743 0.9496673897956704 0.9989785766561499 0.18716317931592685 0.0543224607725226 307.01904171237044 212014.67171793914 0.015117399081980532 0.018069355508670146 1593.5234137933014 -3.2023584489873653 0.04931118686047942 S(ph)SDIVSSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSDIVSSVR 9 0 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 S(0.991)S(0.009)DIVSSVR;S(0.991)S(0.009)DIVSSVR;S(0.988)S(0.012)DIVSSVR 192.21 3.6722e-05 1779370000.0 1154710.0 1169130.0 998350.0 1331940.0 1116140.0 1153290.0 935070.0 842030.0 1253770.0 1159080.0 True False 1148493.1696603403 1208043.7852959915 1138909.0021862397 1500563.467433116 1258273.8131199188 1073565.7768526427 889837.0917857144 904866.5543417025 944795.1831572675 1085106.522061686 1.05841513833888 1.1132951104198752 1.0495826714066097 1.3828720378364956 1.1595855222851463 0.9893644126411515 0.8200458422229712 0.8338965216267152 0.8706934885638424 1.0 20.04940524453473 2.538493357670297 3.240671363362635 0.8634636331396277 1.1566757651832422 0.6285604983890317 0.09824531156161793 0.15690650400171727 3.2592419102413204 0.035701626404043264 0.03203215428928187 345.53604472625386 -2.538493357670297 0.2932121320436145 S(ph)SDKFCSPISSELAQNHEFYK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSDKFCSPISSELAQNHEFYK 21 1 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 S(0.985)S(0.015)DKFCSPISSELAQNHEFYK 246.77 1.5153999999999996e-30 326380000.0 253590.0 240660.0 237910.0 203060.0 199730.0 293160.0 224650.0 212280.0 337300.0 209050.0 True False 252224.69961649796 248670.22261795815 271405.66004920955 228767.37517978915 225164.43160754108 272894.5392244106 213782.82125366072 228121.4115359985 254176.93458843825 195708.25002329034 1.288779086147272 1.2706169647338068 1.3867870159633577 1.168920447413763 1.1505106789353299 1.3943946624219197 1.0923546719579753 1.1656198014588082 1.2987543169906728 1.0 17.578345048065383 -4.999999994581465 0.10827148560103418 0.2355808271705879 1.3817060461031643 0.3935833344158747 0.09434717750637774 170.0530249017842 1.229973813814068 28.955886252475448 1.214378301722462 1.0000000124766378e-05 4.999999994581465 1.1461252189325764 S(ph)SDPLGDTASNLGSAVDELMR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSDPLGDTASNLGSAVDELMR 21 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 S(0.5)S(0.5)DPLGDTASNLGSAVDELMR;S(0.5)S(0.5)DPLGDTASNLGSAVDELMR;S(0.5)S(0.5)DPLGDTASNLGSAVDELMR 225.29 2.9984e-25 127872000.0 35574.0 41027.0 32250.3 33322.8 40598.0 44295.0 39607.0 34046.9 47796.0 40868.0 True False 35382.473536642945 42392.55889365478 36790.861915367226 37541.463063336356 45767.91465680148 41232.99090921432 37691.05809656686 36587.6525646551 36017.316233587284 38259.7692511449 0.924795790178064 1.108019199367916 0.9616069996100743 0.9812255483535869 1.196241262104107 1.0777114372685468 0.9851355309843899 0.9562956933818998 0.9413887469410048 1.0 15.223540552208048 2.0813958123628935 5.550142710277334 0.9632653113322812 1.045001757868744 0.1809297820898229 0.07436244494306793 0.33386140955230403 17.209370116074165 0.02903465213461109 0.021135645110638326 120.613470068592 -2.0813958123628935 0.08173644653646284 S(ph)SDQDSTNKEAEAAGVKPAGVRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDQDSTNKEAEAAGVKPAGVRPR 24 3 Q92625;A0A3B3ISP1;A0A3B3ITU5 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.498)S(0.498)DQDS(0.002)T(0.002)NKEAEAAGVKPAGVRPR;S(0.729)S(0.17)DQDS(0.05)T(0.05)NKEAEAAGVKPAGVRPR 148.05 9.2653e-07 277108000.0 189100.0 144664.0 123143.0 115401.0 123945.0 181548.0 176795.0 170518.0 283740.0 187566.0 True False 188081.90661098494 149479.05378876536 140480.46402185602 130010.75476766878 139728.66107042853 168998.0140780235 168242.75042751365 183242.91903285947 213816.0789212082 175595.37729666854 1.0711096698930769 0.8512698687746225 0.8000237032693301 0.7403996435966279 0.7957422525671438 0.9624286053527549 0.9581274462781978 1.043552067565369 1.2176634841586162 1.0 17.421895339589373 2.0218227649544125 1.4473705900333855 1.1025495971362527 0.8482716845871068 0.4967095233161639 0.09967320156410024 0.3384815529477242 1.3244693354381265 0.06883967830149282 0.03333530427620844 105.15326570596733 -2.0218227649544125 -0.2542779125491459 S(ph)SDYQFPSSPFTDTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSDYQFPSSPFTDTLK 16 0 Q9UK61-3;Q9UK61 Q9UK61-3 FAM208A Protein FAM208A 1 S(0.5)S(0.5)DYQFPSSPFTDTLK 104.45 0.0014266 29921000.0 46221.0 44778.0 40810.0 37109.0 34341.0 43960.0 43388.0 42999.0 54693.0 43053.0 True False 45972.15127163587 46268.40866112738 46555.69327312107 41806.99559512852 38714.122794946044 40921.148670709146 41289.156681744236 46207.80372449784 41214.64299865238 40305.320680472265 1.1405975810511082 1.1479479105979227 1.155075619970866 1.0372574858431485 0.9605213937350672 1.0152790743217 1.024409581282618 1.1464442645381383 1.0225608505980868 1.0 15.298682680155032 3.7365922280631056 24.47571504081581 1.0383824368253354 1.1478811299876759 0.5872092578385812 0.045053659292412965 110.32173675138019 1371792.6734254248 0.013777267794874088 0.02258802943096027 5452.456733819342 -3.7365922280631056 0.10949869316234051 S(ph)SEDLAGPLPSSVSSSSTTSSKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSEDLAGPLPSSVSSSSTTSSKPK 24 1 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 S(0.974)S(0.026)EDLAGPLPSSVSSSSTTSSKPK;S(0.875)S(0.125)EDLAGPLPSSVSSSSTTSSKPK 189.12 9.0428e-18 1391570000.0 827090.0 634730.0 589460.0 503750.0 500670.0 872460.0 845060.0 831100.0 1251900.0 853390.0 True False 822637.0393383371 655856.6043476119 672450.8443218311 567524.6983493493 564427.3567964139 812148.8937499288 804181.2193573054 893120.9022402872 943386.0196005513 798925.919576063 1.0296787464034913 0.8209229269913179 0.8416936136940658 0.7103596021149208 0.7064827200698633 1.0165509390168268 1.0065779562941592 1.117902023649711 1.1808178912271912 1.0 19.607702209861525 2.5618792708254605 4.349466238895573 1.0802380752469005 0.8172577578741776 0.6139455077294801 0.09677442837787376 0.15465795319568298 5.256404725825966 0.033962257170752 0.03136976569145071 364.6525633610071 -2.5618792708254605 -0.26298031737272287 S(ph)SEHLLRPSQVCPQRPLSQER ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEHLLRPSQVCPQRPLSQER 21 2 Q0VF96 Q0VF96 CGNL1 Cingulin-like protein 1 1 S(0.823)S(0.177)EHLLRPSQVCPQRPLSQER 154.45 1.7561e-08 481100000.0 30056.0 37899.0 39814.0 35231.0 27817.0 39271.0 39360.0 36486.0 37711.0 51634.0 True False 29894.181835535524 39160.44530457069 45419.46513050829 39691.2409876842 31359.330065723603 36556.28820399042 37456.00643019848 39208.77059215396 28417.629351510826 48338.673913908555 0.6184319803389151 0.8101265949975306 0.9396092497572566 0.8211073613308987 0.6487420428945723 0.7562534352741528 0.7748662385093111 0.8111263180695647 0.5878859937722491 1.0 15.56089027540699 -1.0886950775902235 4.598215010775502 1.0000152844536312 0.7630667078304824 0.34296614598299824 0.10194293075060715 0.3223593074887304 62110734.737128206 1992.081677323197 0.023720911434498584 0.08152764967334687 1.0886950775902235 -0.23694857662314883 S(ph)SELEGDTITLKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSELEGDTITLKPR 14 1 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 S(0.959)S(0.041)ELEGDTITLKPR 104.78 0.00062856 130140000.0 188760.0 214170.0 170150.0 178600.0 176850.0 204640.0 190260.0 169950.0 217670.0 192400.0 True False 187743.73713320776 221298.51898150114 194105.6410296876 201210.74168772952 199370.7992279261 190493.71847074453 181056.39693621846 182632.53198861398 164028.14512856625 180120.86727807278 1.0423208591560171 1.2286112227066828 1.0776410527161462 1.117087346559896 1.1068723032525434 1.057588281410271 1.005193899364816 1.0139443294299915 0.9106559812158667 1.0 17.45860580379129 2.3255292101842513 1.0236765574323698 0.9662401994648135 1.1258226744756792 0.6056073126530166 0.05078051977501783 0.3357664353274327 0.6851546829016272 0.032495525091543846 0.0198430629684814 211.60660048002543 -2.3255292101842513 0.15958247501086564 S(ph)SEMLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSEMLVK 7 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 S(0.996)S(0.004)EMLVK;S(0.992)S(0.008)EMLVK 122.13 0.0045843 183850000.0 514140.0 388130.0 337050.0 356700.0 290880.0 445470.0 391700.0 394890.0 657500.0 518890.0 True False 511371.9273663234 401048.6724204607 384503.7103088816 401858.18342672486 327921.8438191639 414675.7074235848 372751.97456068965 424358.6970107901 495467.93504861626 485773.9959559209 1.052695145527562 0.8255869514613784 0.7915279811391375 0.8272533869087333 0.675050222015012 0.8536391632235755 0.767336205033324 0.8735722795859505 1.0199556566909667 1.0 18.889925737342757 1.3454135596691543 3.7037431400646597 1.0114575911565575 0.8213330484224799 0.3888009774839728 0.08966091762807882 0.22271299888267201 4.901405447931994 0.06978742002098717 0.022674211498459638 22.15203146777102 -1.3454135596691543 -0.19012454273407764 S(ph)SEREESQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEREESQSR 10 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(0.847)S(0.131)EREES(0.014)QS(0.007)R 111.52 0.0045823 50142000.0 53381.0 62762.0 57735.0 53997.0 61225.0 52319.0 62408.0 59832.0 69235.0 58197.0 True False 53093.602627186665 64850.995229569846 65863.58615838389 60833.014663562855 69021.64084099399 48702.3106756786 59389.086618288304 64296.96766073987 52172.961951469115 54482.81763504157 0.9745017774748602 1.190301787693517 1.2088872972682414 1.1165541230091787 1.266851529290246 0.8939022023771925 1.0900516749356073 1.1801329382676082 0.957603960590929 1.0 15.733513695289066 2.7558203824328946 24.99637503762265 1.0528045470570855 1.1548351388292564 0.2559606186096711 0.10267135159642307 1425.5424150949343 2064532.238612705 0.031747344037831665 0.033610882311680974 569.9285097999818 -2.7558203824328946 0.10203059177217089 S(ph)SFSHYSGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSFSHYSGLK 10 0 Q8NC51;Q8NC51-3 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 S(0.49)S(0.49)FS(0.019)HYSGLK;S(0.485)S(0.485)FS(0.029)HYSGLK 167.71 3.323e-06 686690000.0 834890.0 881710.0 900230.0 991910.0 857930.0 1066380.0 874030.0 1080720.0 1349770.0 1137800.0 True False 830395.0450049988 911057.1843450486 1026974.5590605688 1117485.7042971754 967182.300150492 992663.6605885088 831749.8297811577 1161368.8141849642 1017137.2694913629 1065184.6298804102 0.7795785084678029 0.8553044784802559 0.9641282180121852 1.049100477935583 0.9079949832350462 0.9319169961173366 0.7808503863546542 1.0902981338693862 0.9548929274407183 1.0 20.022672085716007 4.4134534697523105 3.0519471165467706 0.960879911917014 0.7878169868079656 0.35931973352190816 0.07902938907234683 0.27903444043145537 4.971850229461227 0.02016337331932039 0.08051510509258215 25909.16816032413 -4.4134534697523105 -0.17306292510904842 S(ph)SFSITR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSFSITR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.855)S(0.145)FSITR 100.98 0.0098527 110670000.0 168200.0 139630.0 103940.0 152670.0 132400.0 139310.0 128100.0 115790.0 195690.0 154160.0 True False 167294.4298887768 144277.5001418825 118573.84853732432 171998.0063463923 149260.3552037172 129679.82760046603 121903.31361047839 124430.83776970618 147464.8216116558 144321.37681698383 1.1591798358529066 0.9996959793755504 0.8215958796435933 1.191770825222279 1.0342220847365984 0.898548991567029 0.8446656780794565 0.8621788435922341 1.0217808675610005 1.0 17.138925481429606 2.740927567148661 23.060427810029132 0.9057760402842092 1.0351364829288592 0.21496649220265462 0.10714486606793747 102.83019712414183 1001842.673618173 0.03372140795738815 0.034224241806919894 550.7158388138238 -2.740927567148661 0.12936044264464996 S(ph)SFSQHAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 S(0.686)S(0.313)FSQHAR;S(0.459)S(0.459)FS(0.082)QHAR;S(0.892)S(0.104)FS(0.004)QHAR 156.64 0.00025104 4157864000.0 1096551.0 1565769.0 1511491.0 1633027.0 1290829.0 1438678.0 1628206.0 1276689.0 1574414.0 1407494.0 True False 1090647.2912542694 1617884.6746376534 1724295.79468471 1839768.050761971 1455208.421807095 1339225.576143732 1549443.4554290597 1371962.0160753843 1186420.7657667387 1317666.52790376 0.8277111607208772 1.2278407627243155 1.3085980088056464 1.396231908302936 1.1043829307269013 1.0163615359299365 1.1758995334684772 1.0412057884311605 0.9003953129584185 1.0 20.329553871830946 3.009410845687234 24.998512517814653 1.0444597199242371 1.2073874576849002 0.19643512530231755 0.1520808899893845 339.9578397938878 903040.0024397412 0.04500700881297494 0.05372954148908581 1021.9057567425742 -3.009410845687234 0.16292773776066305 S(ph)SGASHQPSPTELRPTLTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGASHQPSPTELRPTLTPK 20 1 Q8TBP0 Q8TBP0 TBC1D16 TBC1 domain family member 16 1 S(0.794)S(0.17)GAS(0.036)HQPSPTELRPTLTPK 140.66 1.2075e-07 124720000.0 226160.0 196250.0 192000.0 193770.0 190540.0 214980.0 194290.0 185770.0 267670.0 231740.0 True False 224942.3796887381 202782.06261436958 219031.931106083 218301.26213231412 214804.13958093888 200118.93860848606 184891.45044012356 199633.100720946 201706.31509424056 216950.15479740445 1.0368389914208498 0.9346942517913135 1.0095956433431568 1.006227731601166 0.9901082568091754 0.922418971285658 0.8522300922660395 0.9201795726182832 0.9297357509728486 1.0 17.727004089977815 2.7252594121822495 5.004185779605737 0.9134673351742274 0.9938696944720198 0.40636426476922427 0.041617000668467435 0.16204547564930685 12.362643725814804 0.012821470208264619 0.012621134633420253 531.2016461224748 -2.7252594121822495 0.08040235929779238 S(ph)SGPTSLFAVTVAPPGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGPTSLFAVTVAPPGAR 18 0 Q00839;A0A1X7SBS1;A0A1W2PP22;Q00839-2;A0A1W2PPS1;A0A1W2PP35 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(0.926)S(0.074)GPTSLFAVTVAPPGAR 196.22 2.0743e-15 83734000.0 32897.0 38545.0 27221.0 28852.0 26513.0 32536.0 30352.0 34263.0 41808.0 32753.0 True False 32719.886207200318 39827.94702405546 31053.480190826478 32504.660241737787 29889.273395137145 30286.862901505752 28883.757804100238 36819.87904398866 31504.978598498154 30662.67549874591 1.0670916896517575 1.2989064514505397 1.0127452900219536 1.060072538127575 0.9747770835053061 0.9877436462693698 0.941984263743768 1.2008045105357676 1.0274699805562204 1.0 14.904195965664437 4.212660785825918 24.99948001097802 1.0351457307317398 1.1829991827166662 0.35284970757909884 0.08443907193109694 219.7712877377372 212131.59100191924 0.02151320290012206 0.04649799756641189 16317.769188329585 -4.212660785825918 0.1478534519849264 S(ph)SGPYGGGGQYFAKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-2;P09651;P09651-3;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 S(0.977)S(0.023)GPYGGGGQYFAKPR 161.95 4.9972e-09 369260000.0 138020.0 108240.0 103610.0 111100.0 86741.0 131040.0 118820.0 107720.0 170550.0 135010.0 True False 137276.9156554635 111842.70296753816 118197.38740573576 125165.24860866026 97786.95219581311 121981.51323498008 113072.22266352086 115758.61339107665 128520.23775291469 126393.54621212372 1.0861070028454969 0.8848766912500012 0.935153660514972 0.9902819594807314 0.7736704533291537 0.965092893511042 0.8946044007164262 0.9158585771207125 1.0168259504106467 1.0 16.94756327430095 -0.6282084084482937 7.86514513042969 0.9999999931006024 0.9324457120350862 0.03969025436278062 0.080205680775301 0.0 0.0 0.0718624395907975 0.01693813932288821 0.23539194182376416 0.6282084084482937 -0.0675542810655162 S(ph)SGSETEQVVDFSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 S(0.858)S(0.14)GS(0.002)ETEQVVDFSDR 423.9 3.510899999999998e-153 1887500000.0 912030.0 991050.0 908340.0 897290.0 816960.0 1080900.0 1060500.0 1015200.0 1095700.0 1085700.0 True False 907119.7318160598 1024036.5001476234 1036226.3765671847 1010886.821998783 920995.0134987078 1006179.9271649125 1009199.563496582 1090959.3790811447 825679.4166277846 1016409.6964854652 0.8924744962121992 1.0075036707033886 1.0194967444232788 0.9945662910283333 0.9061257647219604 0.9899353879091028 0.9929062729194592 1.0733460954312586 0.8123490158376229 1.0 19.955050613114942 S(ph)SGSPYGGGYGSGGGSGGYGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 S(0.333)S(0.333)GS(0.333)PYGGGYGSGGGSGGYGSR;S(0.333)S(0.333)GS(0.333)PY(0.001)GGGYGSGGGSGGYGSR 78.794 0.0087114 32322000.0 13974.2 15357.5 12275.3 15915.7 14881.900000000001 16310.1 15866.5 17970.9 20417.7 14681.3 True False 13898.96445987957 15868.665103695204 14003.55554117969 17930.625988126518 16777.021753067987 15182.621176845623 15098.976779083954 19311.979812381178 15386.03141816293 13744.326864706705 1.0112510126319791 1.1545610970911546 1.0188607764516022 1.3045837867963965 1.2206506668688717 1.1046463989322195 1.0985606590786035 1.4050873500375882 1.1194459772105585 1.0 13.74654863141815 3.752856085967862 24.925430981131193 1.2017223473765697 1.0708579754121188 0.15861048450587056 0.11536307287583401 1233.9401352519578 2151478.8465142963 0.029658959572956056 0.05317418902217358 5660.516829729745 -3.752856085967862 -0.1308643719644509 S(ph)SIDSQASLSGPLSGGAPGAGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSIDSQASLSGPLSGGAPGAGAR 23 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 S(0.5)S(0.5)IDSQASLSGPLSGGAPGAGAR 233.29 5.096699999999998e-37 106680000.0 152880.0 117760.0 115150.0 120500.0 119630.0 160450.0 169190.0 127560.0 171770.0 165680.0 True False 152056.91106656467 121679.57041257664 131362.11909825762 135755.28764485658 134864.17139743752 149358.4691586734 161005.63333143506 137079.1749365553 129439.58510007733 155106.1605542158 0.9803408873202989 0.7844921825013182 0.8469174830250621 0.8752411068637385 0.8694959047116448 0.9629435002774545 1.038035064217563 0.8837764692695146 0.8345225272650149 1.0 17.2428964633544 2.7549151564804992 19.9297764199772 0.9402403334901362 0.8653395084693857 0.21126442536257217 0.06944867221297661 92.79959716679193 113084.27293280578 0.021494942299701312 0.02267171204601111 568.7418109178793 -2.7549151564804992 -0.07490082502075057 S(ph)SLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHK 48 2 Q93052;A0A087WZF1;C9JUT4 Q93052 LPP Lipoma-preferred partner 1 S(0.345)S(0.345)LDAEIDS(0.099)LT(0.099)S(0.104)ILADLECS(0.001)S(0.001)PY(0.001)KPRPPQS(0.001)S(0.001)T(0.001)GS(0.001)T(0.001)AS(0.001)PPVSTPVTGHK 63.313 0.0008477000000000001 285210000.0 81781.0 57045.0 66160.0 42930.0 44679.0 75455.0 74169.0 65651.0 85357.0 67097.0 True False 81340.70018272333 58943.7083405693 75474.75292697112 48364.93359828794 50368.60581681939 70238.97345196441 70581.16211690535 70550.21098902322 64321.911075201155 62814.81201536815 1.2949286573176828 0.9383727571476015 1.2015438796267608 0.7699606517401512 0.8018587368294011 1.1181912545528254 1.1236388337775667 1.123146097639559 1.0239927337435042 1.0 15.938817172765713 0.9958937569930484 24.589794914469678 0.9999999610116703 1.0430048787104456 0.008273048449654818 0.15837617823558015 1055.971049188869 6323614.422456108 0.15343848213480413 0.03835962051316503 9.905895837887611 -0.9958937569930484 0.043004917698775236 S(ph)SLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHKR 49 3 Q93052;A0A087WZF1;C9JUT4 Q93052 LPP Lipoma-preferred partner 1 S(0.484)S(0.484)LDAEIDS(0.009)LT(0.009)S(0.01)ILADLECS(0.001)S(0.001)PYKPRPPQSSTGSTASPPVSTPVTGHKR 40.579 0.047857 110240000.0 26840.0 21444.0 24566.0 24837.0 24265.0 31867.0 28571.0 25205.0 38372.0 33999.0 True False 26695.49642220435 22157.75057682826 28024.67926850019 27981.361653405034 27355.003920077033 29664.109296849132 27188.911578180927 27085.92508839664 28915.73475845702 31829.154711991665 0.8387120758864135 0.6961463720078092 0.8804719924887564 0.8791110510661168 0.8594323087622245 0.9319791733480485 0.8542140633077346 0.85097846089491 0.9084669391978226 1.0 14.95806122332785 7.999964565612082 0.034521024824196785 1.426570730302333 3.2912867961259446e-06 0.5073275804713645 0.05174172099753509 883.4977488116825 2.331028300172768 28.657822905564696 79.4543031332556 99991841.26350306 -7.999964565612082 -1.4265674390155367 S(ph)SLSSHSHQSQIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLSSHSHQSQIYR 14 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 S(0.5)S(0.5)LSSHSHQSQIYR 223.68 2.2098e-12 815690000.0 49278.0 104770.0 132100.0 114220.0 114880.0 125010.0 119590.0 72848.0 90955.0 104340.0 True False 49012.69272330052 108257.20611519765 150698.53176621665 128680.24028875964 129509.28705289307 116368.35294188699 113804.97482183542 78284.28767464873 68540.35898455797 97680.93187003168 0.501763156687672 1.1082736829255286 1.5427630437302438 1.3173527097384141 1.325840003504576 1.191310839424829 1.165068480031061 0.8014285508538048 0.7016759327782992 1.0 16.575789343161627 1.7536594636905447 4.8828520946609615 0.8128839930747854 1.1919857253328086 0.24427461491843816 0.26235027397832894 0.23970476739791352 12.990644296297786 0.13796470038710054 0.07181084969874528 56.70997602618401 -1.7536594636905447 0.3791017322580231 S(ph)SLVTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLVTSK 7 0 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7 A6NMQ3 ENSA Alpha-endosulfine 1 S(0.505)S(0.495)LVTSK 125.04 0.0042883 481340000.0 2128400.0 1274700.0 1179700.0 1280500.0 822880.0 1232500.0 1548500.0 1485100.0 2237500.0 2042500.0 True False 2116940.930887468 1317127.6189275775 1345791.505863781 1442611.1687073787 927668.8904081188 1147300.1759929273 1473593.1391555474 1595925.7031849988 1686098.1059639198 1912145.9013277718 1.1071021983298917 0.6888217149188142 0.7038121436911687 0.7544461788745547 0.4851454534740034 0.6000066078620128 0.7706489019129249 0.8346254865158598 0.8817831865199789 1.0 20.866761177941655 1.3600701868508984 1.4747672140827706 0.9789575931148511 0.7132441864899685 0.25021388237764053 0.15069312871215557 0.5117805501856638 2.074806179769828 0.13939483139425812 0.0439356200848628 22.91237912548653 -1.3600701868508984 -0.26571340662488263 S(ph)SMEMEGIFNHK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSMEMEGIFNHK 12 0 O75962-5;O75962;E7EPJ7;O75962-4;O75962-2;E7EWP2 O75962-5 TRIO Triple functional domain protein 1 S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK 241.83 1.8593e-16 609618000.0 556087.0 530046.0 532722.0 555464.0 565042.0 735823.0 748726.0 666884.0 873660.0 756385.0 True False 553093.089379074 547688.2606904274 607724.6270973689 625785.6854469931 636996.749433677 684957.2879510288 712507.262968922 716650.2704483366 658358.199444219 708111.8617262222 0.7810815201298194 0.773448787251329 0.8582325193873591 0.8837384589511947 0.8995707936325453 0.967300966094894 1.0062072131258821 1.0120579942006616 0.929737566942157 1.0 19.433617757923166 3.5474030851154916 0.7320755318171241 0.9964713721515394 0.7549699251146774 0.8951285523334986 0.027128362820899834 0.2581347992508789 0.2671255150212254 0.014363780395961034 0.040252397161013656 3526.9807157991863 -3.5474030851154916 -0.24150144703686194 S(ph)SPAAFINPPIGTVTPALK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPAAFINPPIGTVTPALK 19 0 F6VRR5;Q9BY77-2;Q9BY77;Q6R954;F8WEE2;Q8WUT1;F8WCX5 F6VRR5 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 1 S(0.5)S(0.5)PAAFINPPIGTVTPALK 112.72 5.4167e-05 0.0 228150.0 209700.0 190480.0 175190.0 179450.0 227920.0 226090.0 221780.0 267310.0 238800.0 True False 226921.66574984815 216679.73773367336 217297.9283181598 197369.0360373646 202301.89381651886 212164.42686596964 215153.16295232676 238330.34977602074 201435.03227048757 223559.57955303433 1.0150388822681438 0.9692259135881544 0.9719911298482778 0.882847590033794 0.9049126600657585 0.9490285645113166 0.9623974216738347 1.0660708445261786 0.9010351185720573 1.0 17.770299841286054 1.9839484914961294 24.141082241021973 1.000840930549217 0.9466473862147782 0.09718639743687241 0.050856870026406126 778.0133106505665 1170112.3888369894 0.020898880700234088 0.013927676125134545 96.37147176653644 -1.9839484914961294 -0.05419354433443879 S(ph)SPAPHSGPCPSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPAPHSGPCPSR 13 0 P85299;P85299-5;P85299-2;P85299-4;P85299-3 P85299 PRR5 Proline-rich protein 5 1 S(0.5)S(0.5)PAPHSGPCPSR;S(0.5)S(0.5)PAPHSGPCPSR;S(0.5)S(0.5)PAPHSGPCPSR 135.72 5.2002e-05 383675000.0 221949.0 263612.0 247678.0 245755.0 269850.0 318171.0 282428.0 245104.0 339843.0 291598.0 True False 220754.05124485222 272386.1660631807 282548.90954423114 276867.55780217226 304213.79797373945 296176.5876639717 268765.8786602667 263394.905092893 256093.24631289215 272987.96599039197 0.808658544503833 0.9977955074868303 1.0350233151089732 1.0142115854730271 1.1143853791139149 1.0849437505036243 0.9845337968843877 0.9648590337574199 0.9381118518678789 1.0 18.058477829286534 4.736428390053582 4.080818070686465 1.017070787561096 0.7912086067516206 0.6094769852774743 0.04972652121866479 0.16890095456823528 6.101846797313089 0.01352421123423176 0.11216131429757253 54504.00177234268 -4.736428390053582 -0.2258621808094754 S(ph)SPATADKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPATADKR 9 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 S(0.994)S(0.006)PATADKR;S(0.983)S(0.017)PATADKR 140.39 6.6893e-05 658610000.0 683820.0 467130.0 414050.0 385130.0 325510.0 409450.0 428140.0 459300.0 666050.0 476520.0 True False 680138.3890995441 482678.13966395136 472344.6410128834 433887.41851173097 366961.7690510728 381145.6852416254 407429.23254637176 493575.2982781421 501910.9021127463 446108.08563070267 1.5246044871344846 1.0819757704717374 1.0588121045712224 0.9726060398531126 0.822584886647518 0.8543796840238075 0.9132971261221433 1.1064029417452295 1.1250881081950135 1.0 18.76703377137951 5.075078206462344 1.430084602156966 0.9733029624767264 2.235886480558321 0.7527815010203804 0.09330745472666684 1.534373090346178 1.5149399900256506 0.02866205838315679 3.489483401026356 118871.62686648518 -5.075078206462344 1.2625835180815945 S(ph)SPATSLFVELDEEEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPATSLFVELDEEEVK 17 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 1 S(0.5)S(0.5)PATSLFVELDEEEVK;S(0.5)S(0.5)PAT(0.001)SLFVELDEEEVK;S(0.5)S(0.5)PATSLFVELDEEEVK;S(0.5)S(0.5)PATSLFVELDEEEVK 188.47 4.2933e-10 123497000.0 246861.0 218326.0 201395.0 154308.0 219351.0 352615.0 231913.0 221114.0 318113.0 244570.0 True False 245531.92780483575 225592.84892914593 229749.6654432791 173843.37697844434 247284.04965476278 328239.5550164265 220694.48219630672 237614.64947414125 239718.3136458104 228961.33321308854 1.0723728952797693 0.9852879775083785 1.003443080187941 0.7592695873091055 1.08002537452305 1.4336025669056627 0.9638941174006527 1.0377937887573325 1.0469816465591184 1.0 17.804744452270526 3.0318004799337452 24.956783382202616 1.100038648474036 0.9555716079919985 0.18651212688405228 0.14207363750216256 332.74260585219633 261131.79587908526 0.042388869762647045 0.050664013639667424 1075.9707862497428 -3.0318004799337452 -0.14446704048203762 S(ph)SPELTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.9)S(0.1)PELTR;S(0.885)S(0.115)PELTR;S(0.877)S(0.123)PELTR;S(0.896)S(0.104)PELTR 221.16 1.9499e-08 2774100000.0 3563850.0 3770140.0 3413150.0 3194010.0 3531450.0 3663610.0 3787820.0 3566520.0 4503500.0 3896270.0 True False 3544662.627580954 3895626.830802244 3893691.852368375 3598371.33851078 3981159.224955952 3410353.2639102987 3604588.675722425 3832671.832821601 3393672.768808276 3647606.7128354292 0.9717776357598452 1.0679953014380816 1.06746482252788 0.9865020057805584 1.0914442094173138 0.9349564063224612 0.9882065034693489 1.0507360399724435 0.9303834091724872 1.0 21.79851875495917 2.739547741187018 24.999771246448418 0.9901109424404315 1.0376396674052726 0.25285156732955505 0.046952132737821 147.87703893884014 3745193.8265658813 0.014551055892864906 0.0146475019333297 548.96889942332 -2.739547741187018 0.04752872496484106 S(ph)SPEQPIGQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPEQPIGQGR 11 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 S(0.985)S(0.015)PEQPIGQGR;S(0.647)S(0.353)PEQPIGQGR 190.78 2.2222e-06 667980000.0 342930.0 396960.0 392270.0 364690.0 407510.0 437300.0 355060.0 351220.0 409890.0 436500.0 True False 341083.70298310503 410172.5736326122 447498.2063280369 410859.7166074916 459403.9829989943 407070.48029347346 337884.3913390821 377429.81985902315 308878.1017446039 408642.1962935488 0.8346756797922233 1.0037450301338045 1.0950856528937012 1.005426557350308 1.1242206193238564 0.9961538088471258 0.826846552812579 0.9236193013897561 0.7558644323718366 1.0 18.64047865853805 2.3329327774656896 6.132820038464946 0.8748732560338874 1.0201845842133923 0.3301326214181919 0.0927470393231036 0.22878314657806406 12.31969974283241 0.03182158586519772 0.026420019117051247 215.24485408877044 -2.3329327774656896 0.14531132817950487 S(ph)SPEQPRPSTSK ddPTM_BT-474_Trastuzumab_2h_R1 5 SSPEQPRPSTSK 12 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;H3BVD2;H3BRN3;P29590-12;P29590-13;P29590-11;H3BT57;H3BUJ5 P29590-2;P29590-12 PML Protein PML 1 S(0.923)S(0.077)PEQPRPSTSK;S(0.615)S(0.385)PEQPRPSTSK;S(0.5)S(0.5)PEQPRPSTSK;S(0.752)S(0.248)PEQPRPSTSK;S(0.786)S(0.214)PEQPRPSTSK 199.8 4.4048e-07 5199176000.0 4652280.0 4039952.0 3691865.0 3637429.0 3599139.0 4689160.0 4631680.0 4294470.0 5634490.0 4291880.0 True False 4627232.6413969025 4174419.3601174443 4211647.501734162 4097927.138445998 4057468.017881814 4365009.406295322 4407627.943664176 4614945.1582768 4245945.437797831 4017968.5439366675 1.1516348599542043 1.0389377901967076 1.0482032041016762 1.0199002539803335 1.009830707610878 1.0863722198329198 1.096979206150214 1.1485767267245042 1.0567393426225782 1.0 21.938034838800004 2.5061475699099325 22.446162578430705 1.0943855597421024 1.050438209089303 0.0026001238531246917 0.05121409380701321 390.543778136939 302008.45752459095 0.016459423061790088 0.01547917012615875 320.73589751697676 -2.5061475699099325 -0.04394735065279942 S(ph)SPGAGPSDHHSASR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 S(0.5)S(0.5)PGAGPSDHHSASR;S(0.5)S(0.5)PGAGPSDHHSASR 250.31 5.7107e-19 560890000.0 101538.0 252424.0 253888.0 313801.0 291090.0 267192.0 283876.0 180644.0 204245.0 266479.0 True False 100991.33068993222 260825.78024646977 289633.22356594354 353528.1744252587 328158.58607439615 248721.64594231365 270143.83336836984 194124.57257164558 153911.55649278272 249472.08207585016 0.40482017005504667 1.0455108967550428 1.160984512398797 1.4171051585554613 1.3154120627197954 0.9969919033533045 1.0828619824731915 0.7781414696038951 0.616949019754391 1.0 17.92851884990195 1.7260414456318682 4.887106294842494 0.7710321500963495 1.0858398052541425 0.16067447183153982 0.26792064209617766 0.27319144529307304 15.580566218056456 0.14465388441216157 0.07282829689222793 53.21590418953768 -1.7260414456318682 0.31480765515779296 S(ph)SPGPDTLVVLEFNPASK ddPTM_BT-474_Trastuzumab_2h_R1 5 SSPGPDTLVVLEFNPASK 18 0 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK 273.88 5.3163999999999997e-39 460539000.0 772318.0 724199.0 677211.0 628452.0 627779.0 784182.0 775107.0 751263.0 936332.0 828257.0 True False 768159.9257005964 748303.5259274592 772556.4223764661 708013.9587633644 707722.9345123455 729973.3441058706 737612.1132137153 807326.0598962156 705585.5248059934 775396.9291535068 0.9906667112277439 0.9650586658169705 0.9963367061820304 0.9130987396820055 0.9127234167472905 0.9414189257916914 0.951270356485625 1.0411777884877176 0.9099668805450059 1.0 19.56457549595384 S(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_BT-474_Trastuzumab_2h_R1 11 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.602)S(0.398)PGQTPEEGAQALAEFAALHGPALR;S(0.495)S(0.495)PGQT(0.011)PEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR 300.62 8.431799999999997e-71 29774421000.0 1018626.3 1054298.4 1038071.4 1030809.0 962964.6 1094226.1 1202733.0 1024960.9 1198378.6 1136786.7 True False 1013142.1291808216 1089390.0849071578 1184222.8300416407 1161309.3137087722 1085592.433871643 1018584.8252381781 1144552.2099037578 1101448.6870039909 903054.2514805351 1064235.9995539403 0.9519900939316712 1.023635815142281 1.112744570318981 1.0912140861571296 1.020067385736485 0.9571042754286679 1.0754684208986363 1.034966574580871 0.8485469875657634 1.0 20.021386680343998 1.2697682541555906 23.536204273879676 0.9242736602140872 1.036624855135694 0.34709262160243237 0.059736260534565 94.03573529389968 70920.19385401084 0.03952384614211997 0.014428141559484927 18.61093764979114 -1.2697682541555906 0.11235119492160683 S(ph)SPIMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPIMR 6 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 S(0.834)S(0.166)PIMR 150.02 0.011082 494010000.0 505050.0 559920.0 480340.0 514880.0 488740.0 489160.0 535740.0 436080.0 534350.0 563520.0 True False 502330.8669163301 578556.5987212119 547967.6968098752 580063.7552081646 550978.1420110638 455345.52055878256 509824.2094744553 468622.503969372 402666.6024231603 527555.6711462551 0.9521855121467705 1.0966740201354366 1.038691699814864 1.0995308873238376 1.0443981026948628 0.8631231649342774 0.9663894018364478 0.8882901456658876 0.7632684557219523 1.0 19.008963818965093 2.7481848930456536 23.170804297956288 0.8951957212135272 1.0516298784528666 0.5342336457245817 0.06997569332799067 185.98189536664185 447757.3677741367 0.020707640044431676 0.021670673184320463 559.9959589365118 -2.7481848930456536 0.1564341572393394 S(ph)SPLKLEFDFTEDTGNIEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPLKLEFDFTEDTGNIEAR 20 1 O75410-3;E7ET87;E7EVI4;O75410-2;O75410;O75410-9;O75410-7;H0YAY0;E5RFM9;R4GMT7 O75410-3 TACC1 Transforming acidic coiled-coil-containing protein 1 1 S(0.81)S(0.19)PLKLEFDFTEDTGNIEAR;S(0.5)S(0.5)PLKLEFDFTEDTGNIEAR;S(0.5)S(0.5)PLKLEFDFTEDTGNIEAR 183.31 2.6754e-17 495790000.0 343515.0 281334.0 243348.0 208693.0 225096.0 315370.0 257518.0 275057.0 344530.0 275394.0 True False 341665.55340810405 290698.03212000564 277609.28318126604 235113.51240222488 253760.64135148018 293569.2142011269 245060.87052570784 295583.1500511455 259625.1979654746 257818.11914333442 1.3252193233872538 1.1275314283027236 1.0767640540691739 0.9119355659852328 0.984262247334143 1.138667891832368 0.950518417169376 1.1464793515416796 1.0070091226642435 1.0 17.97599413254931 4.698533648597697 1.8638470963776972 1.0316929844322067 1.4016612503540458 0.6227024173876783 0.07121963993858348 0.504766461465044 1.9389156391199793 0.018602323743203635 0.3164921929196902 49949.78791850851 -4.698533648597697 0.36996826592183907 S(ph)SPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPLLR 6 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UQL6-2;Q9UKV0-5;Q9UKV0-7;Q9UQL6;Q9UQL6-3 P56524-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 S(0.992)S(0.008)PLLR;S(0.99)S(0.01)PLLR 107.59 0.032658 751150000.0 211415.0 253030.0 221095.0 285230.0 253192.0 249260.0 256950.0 228370.0 273340.0 240221.0 True False 210276.76513041466 261451.9505901352 252223.25420780975 321340.0887547095 285434.500413441 232029.2428949263 244520.34685567865 245412.1290393628 205979.019568348 224889.89011645483 0.9350209785843505 1.1625776083342272 1.1215410976331612 1.4288774323661675 1.2692189064863446 1.031745992560068 1.0872891917420502 1.0912546086988657 0.9159105349808557 1.0 17.778859280920734 2.721099074543145 23.832561832116802 1.0409817158293793 1.1924835659190556 0.2807795567777005 0.12492554265544228 663.187762664169 905156.4318975563 0.04248218483639763 0.04015900937883989 526.1372791180214 -2.721099074543145 0.15150185008967632 S(ph)SPLPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 S(0.654)S(0.346)PLPAK;S(0.639)S(0.361)PLPAK 96.027 0.013672 2736500000.0 4843500.0 4003900.0 3607200.0 3349400.0 3712700.0 4566200.0 4469100.0 4364800.0 5830600.0 4714300.0 True False 4817423.134163442 4137167.391091336 4115062.40565554 3773433.6965782815 4185490.3381030275 4250549.3416786175 4252912.559380081 4690523.540005302 4393726.7560372 4413429.337884713 1.091537388581451 0.9374042438106 0.9323956702630305 0.8549890363457884 0.9483533138675031 0.9630944592659636 0.9636299199067804 1.0627843295783672 0.9955357658774806 1.0 22.073468668668077 1.9012022095210694 6.287076837517711 1.0244391951086704 0.9492244599450683 0.2022591019593084 0.05715270956238104 0.33682873969004007 17.88981137620035 0.02547166800449045 0.015555098490338556 79.65301322083566 -1.9012022095210694 -0.07521473516360211 S(ph)SPLSFPSVPQEETLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPLSFPSVPQEETLR 16 0 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 S(0.5)S(0.5)PLSFPSVPQEETLR;S(0.5)S(0.5)PLSFPSVPQEETLR 187.16 1.4515e-09 263352000.0 229921.0 263651.0 302367.0 282662.0 252217.0 310556.0 291535.0 264813.0 368224.0 325153.0 True False 228683.13088262477 272426.464154605 344937.64537892194 318446.980218012 284335.33994271886 289087.99469019024 277432.3382781485 284574.690753167 277480.12914880813 304401.45716251107 0.7512550465897984 0.8949578188423863 1.1331668665264298 1.0461414448748925 0.9340800881610777 0.9496932024732542 0.9114027930885872 0.9348663879793481 0.9115597925691583 1.0 18.21561573944153 4.61429242584958 3.967042916506509 0.9718583019247788 0.7535558175631133 0.5168517730442408 0.06636707985823052 0.19721608948803285 4.849735283398552 0.01746865315810935 0.09153018939026107 41142.665599185355 -4.61429242584958 -0.21830248436166555 S(ph)SPNPFITGLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 S(0.583)S(0.417)PNPFITGLTR 109.44 0.00049533 0.0 75071.0 69149.0 61710.0 60845.0 64134.0 82103.0 69681.0 64925.0 95810.0 86311.0 True False 74666.82607717229 71450.58266354687 70398.23160706446 68547.97076142157 72301.08474800012 76427.41285967325 66310.26382273028 69770.03318246981 72198.90928822487 80802.55808543527 0.9240651267280985 0.8842613941504148 0.8712376597363419 0.8483391168005286 0.8947870768095454 0.9458538772852211 0.8206456007570726 0.8634631728948432 0.8935225690736984 1.0 16.302113346768508 -1.8916005512106142 2.2415434018003 1.0686959909881024 0.8797953347211503 0.5139980290601798 0.03403650539803434 5538181.622349035 2627556.935204435 2008694.5090789725 0.008940440555911425 0.012835105677948587 1.8916005512106142 -0.18890065626695207 S(ph)SPPFWALPPSAPSER ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPPFWALPPSAPSER 16 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 S(0.5)S(0.5)PPFWALPPSAPSER 70.26 0.046073 165890000.0 40626.0 38577.0 41634.0 43398.0 41776.0 47348.0 40981.0 40370.0 44055.0 39658.0 True False 40407.27412997292 39861.01212471106 47495.7053107847 48892.18235030282 47095.92597424849 44074.9442052033 38998.59246737714 43382.61439470634 33198.23555675557 37126.99248707799 1.0883530128123529 1.073639674384739 1.2792769392057688 1.3168904636517407 1.2685090501375833 1.1871401708755036 1.0504107619530605 1.1684925572629028 0.8941805767949069 1.0 15.180180832374397 1.5429595115798167 1.2664115547299657 0.9597821498412951 1.2030692717678046 0.4732226158195528 0.0931810692592776 0.39460824202451483 1.2126429405165593 0.0875169759985126 0.030567395647202608 34.91077673310428 -1.5429595115798167 0.2432871219265096 S(ph)SPPLPPPAEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 S(0.857)S(0.143)PPLPPPAEER 121.71 0.0003896 1019800000.0 331400.0 394130.0 328540.0 386440.0 387910.0 426310.0 430970.0 327340.0 430830.0 415760.0 True False 329615.77922200155 407248.3787933838 374795.57627912797 435363.2643774139 437308.0391772958 396840.193125797 410122.3346347217 351767.77299883985 324657.71932622837 389225.84084995586 0.8468496811573885 1.0463035493842647 0.9629257283141418 1.1185363834700885 1.1235329037310124 1.0195628128369216 1.0536873238917899 0.9037626387566702 0.8341114213210266 1.0 18.570247968801787 1.6900014648173394 5.845365388509144 0.9009787472304563 1.030090553100586 0.2674412839831537 0.08364491888327866 0.16731379128838425 12.80832966722886 0.043002060593740656 0.021563390732916566 48.978047132983846 -1.6900014648173394 0.1291118058701296 S(ph)SPPLRTPDVLESSGPAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPPLRTPDVLESSGPAVR 19 1 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 S(0.574)S(0.426)PPLRTPDVLESSGPAVR;S(0.576)S(0.424)PPLRTPDVLESSGPAVR 190.8 6.6869e-15 962620000.0 80950.0 96590.0 98398.0 88647.0 102387.0 92777.0 101899.0 74602.0 134216.0 98674.0 True False 80514.17419439048 99804.93976011204 112251.58310925173 99869.70111081826 115425.37755470554 86363.5443635665 96969.75607801827 80169.18006128007 101140.26520225857 92376.5408409385 0.8715868061462313 1.0804143438534288 1.2151524844661126 1.0811154022619456 1.249509632033683 0.9349077544727977 1.0497227455722633 0.8678521552276128 1.0948695879012202 1.0 16.495238903165923 2.6988036337955523 24.998806826471053 0.9770150567033756 1.1038900308431894 0.19431608334536687 0.11045948738365906 770.7437281662677 484635.66843379696 0.03543379196760695 0.03340764346464508 499.80849552013706 -2.6988036337955523 0.12687497413981375 S(ph)SPPSAGNSPSSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPPSAGNSPSSLK 14 0 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 1 S(0.646)S(0.354)PPSAGNSPSSLK 196.74 2.5612e-08 387000000.0 444430.0 486750.0 461830.0 422950.0 446910.0 607000.0 577920.0 548660.0 714110.0 573280.0 True False 442037.23826081457 502951.1795034115 526851.6497016794 476495.4266339595 503821.3394568979 565039.5187243049 549963.8017312075 589603.7952390283 538127.1590837528 536692.7795902994 0.8236317965713216 0.937130512333992 0.9816633831069378 0.8878364769462833 0.9387518495059783 1.0528174408376518 1.0247274095079852 1.0985871576083437 1.002672626776437 1.0 19.033736953344622 2.805517588372196 4.089151920446105 1.0459464128765377 0.9149459866793971 0.6337825971555682 0.04628366297790581 0.14244543057341116 4.720010988374712 0.014576402920910768 0.015299905824425341 639.0246165055725 -2.805517588372196 -0.13100042619714058 S(ph)SPPVAFTEVLQAPAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPPVAFTEVLQAPAIR 17 0 A0A494C178;Q6ZSY5-2;Q6ZSY5 A0A494C178 PPP1R3F Protein phosphatase 1 regulatory subunit 3F 1 S(0.5)S(0.5)PPVAFTEVLQAPAIR 67.952 0.039766 26157000.0 23898.0 30924.0 27935.0 26631.0 34225.0 39732.0 29711.0 32741.0 36633.0 30902.0 True False 23769.335823317397 31953.286646047265 31868.005184627244 30002.48186946205 38583.35088253191 36985.420359067706 28273.765422958033 35184.29967542928 27605.288007050887 28929.807903466735 0.8216209351486587 1.1045108475199457 1.101562972383526 1.0370785028913647 1.3336884576377834 1.2784537139852783 0.9773229575979975 1.2161954131473185 0.9542160839492776 1.0 14.820269123223598 4.753998573907307 3.564208319739781 1.127640247068476 0.7804659059321368 0.32816459647237106 0.12285597951478865 0.34522423090049514 7.618647736589182 0.029059941564770375 0.32708628116975347 56754.27417655129 -4.753998573907307 -0.34717434113633927 S(ph)SPPVLQGPAPAGFSQHPGLLVPHTHAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPPVLQGPAPAGFSQHPGLLVPHTHAR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR;S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR;S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR 133.94 6.714199999999998e-06 1510740000.0 251201.0 408656.0 413960.0 406090.0 400467.0 435390.0 427370.0 79471.7 456110.0 263971.0 True False 249848.56172705462 422257.86792223115 472241.96979517787 457500.952362654 451464.0986961265 405292.51409781724 406696.4803880568 85402.28180311582 343707.80206087325 247124.14478305716 1.0110244870908471 1.7086872199109424 1.9109503452596461 1.8513000935796067 1.8268716684581883 1.6400360816771318 1.6457173002867986 0.34558453152397517 1.3908305170367063 1.0 17.91487644769781 1.766115380127868 24.999999999885663 0.855057946364008 1.6816006892504611 0.5055820090094593 0.3351936365531533 13.428672797619534 12191.02116436973 0.14983659170442137 0.08310076389349173 58.360013022180844 -1.766115380127868 0.8265427428864531 S(ph)SPQLDPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPQLDPLR 9 0 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.5)S(0.5)PQLDPLR 63.734 0.07775399999999999 3242800000.0 892780.0 1016100.0 980460.0 873620.0 773060.0 960040.0 1002700.0 842200.0 1103600.0 969720.0 True False 887973.3716771823 1049920.2742545796 1118500.245688907 984220.2024257239 871504.6087143928 893674.6944910735 954195.5703140248 905049.2406049459 831632.5674823609 907831.6393809398 0.9781256051867733 1.1565143014518986 1.2320569114022337 1.0841439753045778 0.9599848373963714 0.9844057595310073 1.0510710674995873 0.9969351158790949 0.9160647540875091 1.0 19.792065243812587 3.392465367764493 5.076546941134204 0.990588404694689 1.1305756842858325 0.47088612025664545 0.06686688855283611 0.1765623354476289 7.821682693455019 0.018926188038677905 0.025951127912682802 2468.6832351974517 -3.392465367764493 0.13998727959114354 S(ph)SPQLDPLRK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPQLDPLRK 10 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.537)S(0.463)PQLDPLRK;S(0.549)S(0.451)PQLDPLRK;S(0.5)S(0.5)PQLDPLRK 142.38 2.1955e-05 31639585700.0 7288634.0 6774021.0 6388981.0 5439013.0 5313181.0 7457982.0 7721406.0 7443539.0 9655311.0 7177284.0 True False 7249392.804387356 6999490.194002834 7288493.990781627 6127591.488125439 5989783.106658929 6942429.258541234 7347892.093144642 7999013.67770518 7275888.978588884 6719223.590338025 1.0789033445488692 1.0417111590195958 1.0847226458220842 0.9119493354762997 0.8914397662360868 1.033218967221774 1.0935626705011896 1.1904669594873196 1.082846683216692 1.0 22.679863107821976 2.262866361923498 3.8036724538940683 1.1178844672763564 1.0006471331142137 0.2165518509355937 0.07456467834697787 0.26718333094782265 8.33253594457357 0.02992436522190264 0.023185164323909963 183.17506820644905 -2.262866361923498 -0.11723733416214266 S(ph)SPQSTDTAMDLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPQSTDTAMDLLK 14 0 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 S(0.5)S(0.5)PQSTDTAMDLLK;S(0.5)S(0.5)PQSTDTAMDLLK 110.44 0.00074434 84079000.0 156048.0 169602.0 161017.0 147300.0 153745.0 189370.0 185345.0 163985.0 208415.0 174753.0 True False 155207.85490656277 175247.1000434261 183686.7940151468 165948.16489699093 173323.51443199025 176279.29762903063 176379.15426334192 176222.39339895739 157053.91586791992 163600.11392642962 0.9487026089502553 1.0711917971049463 1.122779132646265 1.0143523798010141 1.0594339470321714 1.077501068906974 1.078111439107304 1.0771532437819937 0.9599865922987467 1.0 17.319814227368294 1.2398765636698066 24.999486971810576 0.9799932764576976 1.0601822596768078 0.3109418258445289 0.045031303065584484 37.03834023744033 703748.8292234984 0.03316275702870211 0.010603169004843094 17.373069765713005 -1.2398765636698066 0.08018898321911017 S(ph)SPRPTAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPRPTAEK 9 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.5)S(0.5)PRPTAEK 64.64 0.041676 851090000.0 802790.0 709620.0 649220.0 578920.0 569570.0 690650.0 782000.0 690050.0 1021100.0 769470.0 True False 798467.8678383547 733239.2727256521 740624.5328786002 652211.2126419959 642101.3633941179 642906.9911152247 744171.6724698994 741545.0350029011 769463.5870389998 720361.7658235894 1.1084262182147695 1.0178764441882058 1.0281285987351707 0.905393988944323 0.8913595832782764 0.892477948743142 1.0330527073700089 1.0294064318573222 1.0681627253762869 1.0 19.458362084719692 2.0634522967664473 24.999950609486774 1.0346523872876394 0.9708030680832881 0.15855830298499785 0.06596812929443169 120.14156390476174 47334.1220953686 0.02719281686086239 0.020083225400623368 115.731690454852 -2.0634522967664473 -0.06384931920435133 S(ph)SPRPTAEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPRPTAEKK 10 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.5)S(0.5)PRPTAEKK;S(0.5)S(0.5)PRPTAEKK 75.479 0.020283 328010000.0 433200.0 406870.0 376910.0 338110.0 354270.0 418040.0 468820.0 417980.0 669850.0 450880.0 True False 430867.69933304464 420412.4219918916 429975.6518395511 380914.6913328002 399384.1845771979 389141.8787603108 446141.38553368044 449171.79005943384 504774.4430301381 422104.4523822108 1.0207608493617566 0.9959914415003916 1.0186475158291224 0.9024180843936852 0.9461738257514517 0.9219089648643347 1.0569454622328989 1.064124738614967 1.1958519749824164 1.0 18.68724052144352 2.0850225248049536 4.852569521055423 1.0865249822514675 0.9675521944819055 0.4785954688155196 0.05754816164493701 0.18062071705042193 7.502743111220017 0.022634678933752015 0.016283673941937478 121.62490801097589 -2.0850225248049536 -0.118972787769562 S(ph)SPSDTRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSDTRPK 9 1 A0A0D9SGE8;Q8IWS0-3;Q5JRC6;Q8IWS0-2;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 1 S(0.758)S(0.241)PS(0.001)DTRPK 60.691 0.05696900000000001 1569900000.0 3448400.0 2381200.0 1948000.0 2012500.0 2057600.0 2020600.0 2540500.0 2601200.0 4227500.0 2778700.0 True False 3429834.1975532607 2460456.8025342054 2222261.467680469 2267282.293653728 2319623.163649312 1880920.677980777 2417606.3093475406 2795314.7526259627 3185689.270597755 2601360.98703524 1.3184768337216544 0.9458344362034803 0.8542687765196214 0.8715754195413455 0.8916959911407669 0.7230525434013118 0.92936209983793 1.0745585739762211 1.2246240665846502 1.0 21.310835183164468 1.6640380537863302 4.004165358236016 1.1213800505834783 0.918552432439983 0.19738649187233515 0.1522354938215288 0.2559434728316501 9.60804037322499 0.08789371694802013 0.040648095326851666 46.13579979372913 -1.6640380537863302 -0.20282761814349537 S(ph)SPSHSTTSGETDPTTIFPCK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPSHSTTSGETDPTTIFPCK 21 0 Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5;Q96PN7 Q05GC8;Q96PN7 BCAR2;TRERF1 Transcriptional-regulating factor 1 1 S(0.485)S(0.485)PS(0.004)HS(0.006)T(0.006)T(0.006)S(0.006)GET(0.001)DPTTIFPCK;S(0.5)S(0.5)PSHSTTSGETDPTTIFPCK 172.02 3.9577e-12 516900000.0 558870.0 630200.0 631810.0 570150.0 604140.0 832390.0 755290.0 615990.0 840690.0 743080.0 True False 555861.1060162938 651175.8260360555 720763.3562090321 642330.9315412028 681073.6479816749 774848.8385352955 718753.7372120068 661958.3017338411 633513.214168853 695655.998217205 0.7990459471934819 0.9360601039951624 1.036091628701788 0.9233456380557902 0.9790379867737773 1.1138390821340463 1.0332028172746237 0.9515598276019716 0.9106702390152479 1.0 19.408014544370793 4.668517122720169 2.9069033797384525 0.9929567000245515 0.7801363403047041 0.5184167821139654 0.05655622314040962 0.2789952423024877 3.6134306142213353 0.014687280859015092 0.12727983665098894 46614.08059495029 -4.668517122720169 -0.21282035971984736 S(ph)SPSIICMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPSIICMPK 10 0 Q9NZN8;Q9NZN8-5;F8VP97;F8VV52;F8VUB4;Q9NZN8-4;F8VX63;F8VVY1;F8VQD8;A0A087X050 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 1 S(0.644)S(0.356)PSIICMPK;S(0.656)S(0.328)PS(0.016)IICMPK 136.49 0.00012203 766530000.0 3254700.0 3045800.0 2784400.0 2527400.0 2561200.0 3481100.0 3534100.0 3053800.0 4179500.0 3223100.0 True False 3237177.0568311624 3147177.611775017 3176419.317561344 2847368.5808598395 2887353.6385782557 3240459.7506279694 3363142.081426944 3281690.062882195 3149518.2274307045 3017398.99856526 1.0728369229161951 1.0430100935512556 1.0527011240713264 0.9436500052574194 0.9569015035635529 1.0739248445991971 1.1145831502648742 1.0875890342783976 1.043785799931751 1.0 21.52487404976338 2.61398725370474 12.56718996647489 1.075155586728386 1.0137113399035678 0.20221870736625347 0.047277962315449035 0.8955156399167513 86.99455221102414 0.016136957158944757 0.0152121352921099 411.13765427186496 -2.61398725370474 -0.061444246824818194 S(ph)SPSPANSTAGTIDSDGWDAGFSDIASSVPLPVSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSPANSTAGTIDSDGWDAGFSDIASSVPLPVSDR 36 0 Q86YI8 Q86YI8 PHF13 PHD finger protein 13 1 S(0.437)S(0.437)PS(0.106)PANS(0.01)T(0.01)AGT(0.001)IDSDGWDAGFSDIASSVPLPVSDR 57.025 0.00017768 0.0 6042.7 6777.6 5416.5 5044.5 4814.0 6364.8 6385.9 6550.6 4927.1 8636.3 True False 6010.166774607083 7003.188318854286 6179.096118938015 5683.133182775765 5427.034365186519 5924.816357127609 6076.9896204930055 7039.439035272806 3712.8822247574703 8085.123940091573 0.7433611184121207 0.8661819374379272 0.7642549656286444 0.7029123146269787 0.6712370033408606 0.7328046423318656 0.7516260314030729 0.8706655689427906 0.4592239095243131 1.0 12.981054174178583 -0.9555890103200715 4.949456409329592 1.0000017441744815 0.7424526752127253 0.35077637020239405 0.10920371896936422 0.005769246741203743 69179111.17281012 290.3376292839691 0.024545468794342492 0.11076715205809298 0.9555890103200715 -0.2575490689617562 S(ph)SPSPQKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSPQKR 8 1 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3;O14617-4 O14617-5 AP3D1 AP-3 complex subunit delta-1 1 S(0.5)S(0.5)PSPQKR 92.062 0.007377199999999999 104630000.0 70847.0 57369.0 50517.0 48694.0 55519.0 42068.0 55844.0 61256.0 92305.0 64575.0 True False 70465.56762384163 59278.492484707145 57629.35449836455 54858.65540729167 62589.01556310565 39159.93817742022 53142.6123752034 65827.23377166534 69557.66957363117 60453.76821456105 1.1656108412257602 0.9805590988855708 0.9532797739559896 0.9074480719314081 1.0353203350528328 0.6477667039453142 0.8790620327684276 1.0888855354397913 1.1505927856599238 1.0 15.883544648139248 -0.8986656788382351 5.950080962310595 1.0000000078462998 0.9719654557812041 0.0 0.1433219379452267 1.5910978869918883e-08 2.852349551365198e-09 0.1423689886372888 0.03355668293139302 0.12627992670888366 0.8986656788382351 -0.028034552065095752 S(ph)SPSTDHYK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSTDHYK 9 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 S(0.423)S(0.423)PS(0.039)T(0.116)DHYK 77.14 0.021543 184110000.0 148160.0 194060.0 201000.0 172410.0 173270.0 162760.0 194420.0 191160.0 202040.0 204930.0 True False 147362.32302212337 200519.16978825285 229299.0528766809 194237.08832240434 195334.90744824862 151508.78429582866 185015.16184347545 205425.3298908115 152249.94919729626 191851.19195060016 0.7681074145219163 1.045180734868119 1.19519222448054 1.012436182165699 1.018158425090971 0.7897203178953442 0.9643680602782759 1.0707534720123426 0.7935835459208361 1.0 17.54962820271282 2.941448412713266 24.99925792214251 0.9393295279285715 1.0208584339232574 0.08890865892603872 0.1265475212861128 706.1631738789504 301503.5307856426 0.039652009972426766 0.0420574324760763 873.8731841703953 -2.941448412713266 0.08152890599468587 S(ph)SPSTENMHFPSSISSQTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.406)S(0.406)PS(0.183)T(0.005)ENMHFPSSISSQTR 165.47 1.4021e-11 488490000.0 207860.0 246170.0 252300.0 312630.0 283180.0 299550.0 286690.0 231500.0 307250.0 313650.0 True False 206740.90485541703 254363.61963709266 287821.6469690876 352208.92594532366 319241.2944606398 278842.81356485304 272821.70943784574 248775.70553318106 231532.3544390678 293632.5884707251 0.7040802450850202 0.8662649502286169 0.9802101615086336 1.1994885437603209 1.0872134326890894 0.9496316979566232 0.9291261261521924 0.8472346575318351 0.7885104158394577 1.0 18.163652567331983 -0.8658659438657285 7.202433504938483 1.0000000004428586 0.9347184808737923 0.022796714890873093 0.1351262991816616 1.0537017523813245e-09 0.0 0.14142545519423996 0.03333429946674711 0.13618649921633083 0.8658659438657285 -0.06528151956906636 S(ph)SPVKKPSLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPVKKPSLLK 11 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 S(0.566)S(0.433)PVKKPSLLK 71.692 0.025221 892590000.0 1309200.0 861730.0 893350.0 816850.0 825240.0 1382300.0 1296300.0 1234500.0 2150200.0 1347800.0 True False 1302151.4126657941 890412.1621232153 1019125.9148626012 920263.1262464835 930329.4224193018 1286744.8545841966 1233593.0166531089 1326624.658663982 1620312.0212038523 1261782.2500903648 1.0319937632444411 0.7056781485549085 0.8076876297709963 0.7293359263696864 0.7373137657885698 1.0197836072682462 0.9776591932282792 1.0513895393353119 1.2841455180462482 1.0 20.267031530500507 2.351801372679516 1.4575923092463967 1.1069869579393412 0.7949717053375562 0.5570043932794756 0.11685833256622162 0.29333632069084126 1.2499852502911306 0.06115280273348066 0.04058287838125518 224.80262217134563 -2.351801372679516 -0.312015252601785 S(ph)SPVKVGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPVKVGEK 9 1 P49916-3;P49916;P49916-4;P49916-2 P49916-3 LIG3 DNA ligase 3 1 S(0.874)S(0.126)PVKVGEK;S(0.946)S(0.054)PVKVGEK 132.79 0.00017875 2407670000.0 3444000.0 2629300.0 2296200.0 2418500.0 2365400.0 3716700.0 4110100.0 3534700.0 7111900.0 4113200.0 True False 3425457.8866643705 2716814.661054588 2619485.001071814 2724681.8520256076 2666619.669175776 3459773.2771707126 3911278.7608932634 3798477.262842916 5359267.539577571 3850692.054512309 0.8895694171779741 0.7055393219177255 0.6802634342058735 0.7075823808950854 0.6925040048453067 0.8984809037420921 1.0157339786000177 0.9864401538917643 1.3917673664133923 1.0 21.87668632263513 2.1595683080530628 1.2589876613895734 1.1485534121740355 0.7274550691283254 0.683653492245905 0.11783062129276524 0.2572556373163918 0.7756740593133411 0.07665156250801813 0.04081079010953786 144.40037067045705 -2.1595683080530628 -0.42109834304571014 S(ph)SPVNNHHSPGQTPTLGQPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPVNNHHSPGQTPTLGQPEAR 22 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 Q5SW79 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 S(0.393)S(0.393)PVNNHHS(0.214)PGQTPTLGQPEAR 158.2 3.5161e-11 624220000.0 174830.0 205520.0 140650.0 201200.0 171880.0 204580.0 197000.0 150300.0 268910.0 211230.0 True False 173888.7347054392 212360.60896053666 160452.2974482841 226671.89937049896 193767.89918742384 190437.86612951953 187470.35738691821 161516.14920793558 202640.7337093892 197749.12055689865 0.8793401164856555 1.0738890183809127 0.8113932289378598 1.146259961774537 0.9798673118835475 0.96302762608102 0.9480211940208204 0.8167730342014963 1.0247364597056858 1.0 17.593311753099368 2.194081244053155 3.611764132827982 0.9181230915332323 0.981403103419111 0.0 0.10196601954808407 0.6405943758108205 17.322527493386247 0.03867898210918101 0.02822966280967364 156.34400901273938 -2.194081244053155 0.06328001188587862 S(ph)SPVRPSSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPVRPSSEK 10 1 B3KV94;A0A3B3ISE6;A0A3B3ITA8;A0A3B3ITJ7;A0A3B3ITE7;A0A3B3IT25;A0A3B3IS40;Q9UGL1;Q9UGL1-2 B3KV94 KDM5B Lysine-specific demethylase 5B 1 S(0.936)S(0.064)PVRPSSEK;S(0.985)S(0.015)PVRPSSEK;S(0.953)S(0.047)PVRPSSEK;S(0.941)S(0.059)PVRPSSEK 156.0 7.0921e-06 2429770000.0 4100720.0 3271180.0 2925680.0 2689360.0 2739250.0 3773060.0 3656400.0 3458470.0 4604000.0 3687930.0 True False 4078642.1791528263 3380059.2488299287 3337590.313533568 3029832.7002537088 3088077.250693221 3512237.2430278845 3479525.9631955745 3716558.593154814 3469405.8904392812 3452563.1500042775 1.1813374591418475 0.9789999782699821 0.9666992806574538 0.8775604003796296 0.8944303453767081 1.0172839975493375 1.0078095061610282 1.0764636102746477 1.0048783294333032 1.0 21.71923637203771 2.4999111861654826 23.6690763611741 1.0304757556193203 0.9716028154114346 0.05565011364173422 0.07942266109672332 936.2772891832274 972395.5299283146 0.0269321016467661 0.025203550988861314 316.1631036043627 -2.4999111861654826 -0.05887294020788569 S(ph)SPYGTLKPEEMSGPGLAEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 S(0.5)S(0.5)PYGTLKPEEMSGPGLAEPK;S(0.5)S(0.5)PYGTLKPEEMSGPGLAEPK 218.86 3.1948e-25 720910000.0 405920.0 252490.0 247520.0 227695.0 287450.0 377290.0 364990.0 372390.0 598230.0 368300.0 True False 403734.57182195137 260893.97701657173 282368.6645175919 256521.16365390562 324055.05365036655 351208.8303451288 347334.0393027983 400179.63275810477 450804.23237130616 344794.77868250635 1.170941663805524 0.7566645237885342 0.8189470432137905 0.7439821584134696 0.9398490745382274 1.0186025196991995 1.0073645564761586 1.1606313595792523 1.307456667684679 1.0 18.395378401920986 2.280330829973183 1.3135582589922126 1.1671560346953387 0.8658744398694187 0.41163633037921576 0.13517000375748325 0.39221097325440846 1.3278106334690356 0.07982620826114095 0.04799848988829213 190.69127826503845 -2.280330829973183 -0.30128159482592 S(ph)SQRHSPPFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSQRHSPPFSK 11 1 Q8WV28-3;Q8WV28;Q8WV28-2 Q8WV28-3 BLNK B-cell linker protein 1 S(0.333)S(0.333)QRHS(0.333)PPFSK 107.35 0.0013342 454480000.0 313720.0 421820.0 399440.0 391750.0 409030.0 468750.0 490550.0 388560.0 546580.0 490690.0 True False 312030.96637756855 435860.0237044253 455677.68000528077 441345.5098329675 461117.5459892491 436346.4158188109 466820.22241701925 417556.3202677004 411882.68279676465 459373.74409915536 0.6792529403034776 0.9488135299486019 0.9919541241933131 0.960754756888551 1.0037960417035008 0.9498723456093433 1.0162100651452481 0.9089686244183153 0.8966178152050853 1.0 18.809308875035033 4.737429003976293 5.087136236028353 0.9636182786884809 0.6661610621259809 0.8377557497534003 0.037662037879646566 0.06066858619303658 5.118101880420657 0.009155453758524857 0.06345671099443727 54629.72369765605 -4.737429003976293 -0.2974572165625 S(ph)SREKEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSREKEQR 8 2 H7C1L9 H7C1L9 TRIP12 1 S(0.5)S(0.5)REKEQR 51.927 0.076257 3930000.0 2950.7 4863.1 3732.2 6503.0 6460.6 4722.4 7492.3 5973.8 4962.8 8211.0 True False 2934.8137590535907 5024.965343693969 4257.661319136059 7326.279133232388 7283.319115023689 4395.951603333868 7129.868825634558 6419.595290341753 3739.7844381129585 7686.966950209228 0.38179086472769463 0.6536993558372456 0.553880528785176 0.9530780060180923 0.9474893234483657 0.5718707562823874 0.9275269260056456 0.835127213623186 0.4865097589643165 1.0 12.908198750332636 4.4189985063420005 1.3321495187259684 0.807921894308126 0.36147392519289306 0.3628807120027221 0.17164101365500972 0.8406859591839038 1.9939122977101802 0.047563689333120183 0.4373835365000984 26242.095179916665 -4.4189985063420005 -0.44644796911523293 S(ph)SS(ph)EDAESLAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 2 S(0.998)S(0.038)S(0.964)EDAESLAPR;S(0.994)S(0.114)S(0.892)EDAESLAPR 98.582 0.0062539 692680000.0 710310.0 898500.0 750660.0 849000.0 800250.0 997770.0 903130.0 852900.0 937870.0 893020.0 True False 706485.7698828602 928406.0293452803 856346.403146313 956483.3129500699 902157.0940466365 928796.5083979403 859442.1516083636 916547.7289384449 706744.5053141376 836026.6990471126 0.8450516839810251 1.1104980623267893 1.0243050899239945 1.1440822572296452 1.0791008170850263 1.1109651276168153 1.0280080200643587 1.0963139454554605 0.8453611662398719 1.0 19.673189490867134 -3.174600305182869 9.17192227353237 1.0009893029655892 1.0421791252286696 0.0 0.10196712545271507 0.0 0.0 0.0 0.02100474233721354 0.0006689592985473729 3.174600305182869 0.04118982226308043 S(ph)SS(ph)PFLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSPFLSK 8 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(0.998)S(0.002)S(1)PFLSK;S(0.983)S(0.017)S(1)PFLSK;S(0.998)S(0.014)S(0.989)PFLSK;S(0.99)S(0.017)S(0.992)PFLSK 166.86 0.00046196 4209120000.0 7944750.0 6013630.0 4662020.0 4977270.0 5406420.0 7629540.0 6662680.0 6995270.0 9924000.0 6705280.0 True False 7901976.348744697 6213790.039233903 5318391.892995734 5607391.871669012 6094895.540638082 7102127.85780533 6340380.714490729 7517292.568661306 7478363.174787022 6277343.289720979 1.2588090190453693 0.9898757726710371 0.8472361073042622 0.893274688489795 0.9709355151276096 1.131390706229962 1.0100420547133329 1.1975277154223378 1.1913261438214935 1.0 22.581722677215307 2.7404215034091517 24.64344178965874 1.116652349106529 0.9783766547208248 0.18074716628867005 0.11856552884430134 209.9388073566412 2780203.86334868 0.03831433494515411 0.03877450276118609 550.0744882676875 -2.7404215034091517 -0.1382756943857042 S(ph)SS(ph)PFLSKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPFLSKR 9 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(0.927)S(0.083)S(0.935)PFLS(0.054)KR 69.65 0.036518 213080000.0 621340.0 626640.0 428170.0 531380.0 552330.0 700890.0 703350.0 635740.0 1030600.0 678610.0 True False 617994.7744773631 647497.33358812 488452.61427964305 598652.6535163806 622665.9515836035 652439.1240175917 669326.2734420758 683182.1470223083 776622.4393324767 635300.5288127491 0.9727597356675792 1.0191984804391148 0.7688528375577843 0.9423141117718631 0.9801124402450017 1.0269771461340844 1.0535585019784481 1.0753684532563517 1.2224489105712384 1.0 19.27707969444945 2.546348320043838 1.2475806974804096 1.1021433464101291 0.9233693140316137 0.46242983722405373 0.07918595342879937 0.40242096820388806 1.2733173403624236 0.04159854099886238 0.03232005190676999 351.8425179508869 -2.546348320043838 -0.1787740323785154 S(ph)SS(ph)PVTELASR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.998)S(0.012)S(0.99)PVTELASR;S(0.999)S(0.001)S(1)PVTELASR;S(0.952)S(0.066)S(0.979)PVT(0.004)ELASR;S(0.999)S(0.02)S(0.981)PVTELASR 215.14 1.906e-11 6027400000.0 2796020.0 2758290.0 2312280.0 2466230.0 2363450.0 2818690.0 2708530.0 2568100.0 3357310.0 2671270.0 True False 2780966.538987023 2850098.0152284857 2637828.925301945 2778454.4651317396 2664421.3482343336 2623840.5947825583 2577508.0563106104 2759744.662547564 2529945.9361491557 2500787.261610694 1.1120364301583463 1.1396803154670618 1.0547994088881376 1.1110319169421101 1.065433029484582 1.0492058381217955 1.0306786570283881 1.1035503518880219 1.0116597980908144 1.0 21.253950904062823 7.999999995471066 0.09410309430869541 0.9580231791123516 1.4263033863040309 0.5696700728018582 0.02927654077961275 109.3702431868723 0.7348890048563628 0.45143056288044936 6.609439416735445 99999998.9571745 -7.999999995471066 0.4682802071916793 S(ph)SSAPLIHGLSDLSQVFQPYTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSAPLIHGLSDLSQVFQPYTLR 23 0 G1UD79;Q7Z309-4;Q7Z309;Q7Z309-2;Q7Z309-3 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 S(0.332)S(0.332)S(0.332)APLIHGLS(0.004)DLSQVFQPYTLR;S(0.333)S(0.333)S(0.333)APLIHGLSDLSQVFQPYTLR 195.73 2.1057e-24 40760000.0 14602.099999999999 12918.8 14264.2 14705.900000000001 15361.8 15704.8 17959.3 16914.0 17525.5 16890.5 True False 14523.483916045818 13348.794448420482 16272.475373350992 16567.665432170095 17318.034173477827 14619.16414112269 17090.540047811584 18176.2085675517 13206.575354668468 15812.533829315415 0.9184792312741313 0.8441907282229923 1.0290871500418786 1.0477552561155452 1.0952093042401156 0.924530141653813 1.0808223547403155 1.1494810865703373 0.8351966545794408 1.0 13.948780945859694 4.22838091506253 24.545205759110562 1.0349559223422733 0.8813349894647616 0.2795611758259767 0.08667606835580048 158.4544780698938 382067.89499573264 0.0213191839632338 0.046918089644243856 16919.24249778392 -4.22838091506253 -0.15362093287751166 S(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSAPNVHINTIEPVNIDDLIR 22 0 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y492;A0A2R8Y679 P15056 BRAF Serine/threonine-protein kinase B-raf 1 S(0.366)S(0.366)S(0.268)APNVHINTIEPVNIDDLIR 219.95 6.806e-26 141180000.0 46753.0 44796.0 45018.0 44767.0 44974.0 47191.0 52629.0 43481.0 50658.0 52740.0 True False 46501.28704274662 46287.00778024619 51356.14309652942 50434.49760993609 50701.172318217374 43928.797245665046 50083.13420769603 46725.77301204422 38174.01468242251 49374.08804701432 0.9418156138593953 0.9374757005369174 1.0401436285289518 1.0214770460552516 1.0268781525633324 0.8897135923571038 1.0143606938118341 0.9463622491123612 0.7731588813564105 1.0 15.591466480998445 1.4503153457752513 8.739453536746161 0.8774876695258771 0.9810861138345011 0.23415796436226677 0.06784134212398442 0.20321614543176053 45.251590627984854 0.03717904461858914 0.016094083625492927 28.204301318079107 -1.4503153457752513 0.10359844430862397 S(ph)SSDALSASFNGEMLGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSDALSASFNGEMLGNR 18 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.333)S(0.333)S(0.333)DALSASFNGEMLGNR 84.14 0.0040639000000000005 82253000.0 35966.0 37865.0 35156.0 38274.0 30346.0 39794.0 39256.0 36191.0 42868.0 41781.0 True False 35772.36305219825 39125.31363512416 40105.6592185701 43119.484475678364 34210.383225166195 37043.134445 37357.03730751708 38891.7561941743 32303.755801770447 39114.50080948628 0.9145550195420754 1.0002764403332296 1.0253399222429407 1.1023912764654475 0.8746214963037261 0.9470435178356178 0.955068747763669 0.9943053187257356 0.8258767243153964 1.0 15.255415932545077 3.224789244162313 24.99976205108463 0.9389162603310703 1.0109503368003505 0.2540907830498481 0.06481697553618727 354.10058772324373 642812.8227933374 0.018729245663668057 0.022498874042184296 1677.9895202993916 -3.224789244162313 0.07203407646928017 S(ph)SSDPPAVHPPLPPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 1 S(0.364)S(0.364)S(0.272)DPPAVHPPLPPLR;S(0.35)S(0.35)S(0.299)DPPAVHPPLPPLR;S(0.333)S(0.333)S(0.333)DPPAVHPPLPPLR 148.44 5.9993e-07 777070000.0 864570.0 987800.0 958950.0 956590.0 891540.0 1017820.0 1022400.0 916420.0 1106360.0 1085280.0 True False 859915.2511827572 1020678.3258622898 1093961.824657179 1077694.1959186166 1005072.3344284159 947460.4990905648 972942.606052718 984807.9138864703 833712.4024644658 1016016.5012450444 0.84635953267393 1.0045883355354295 1.0767165920205224 1.0607054064554968 0.989228357213473 0.9325247158186212 0.957605122417261 0.969283385338397 0.8205697461043399 1.0 19.95449240260657 2.828126691193257 4.590048336960567 0.9388907568387487 1.0054505368717483 0.13929484736520137 0.07250465690207279 0.44214431914427066 16.19464149436537 0.022981052191231137 0.024367177786211235 673.1730038234169 -2.828126691193257 0.06655978003299967 S(ph)SSEAKPTSLGLAGGHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSEAKPTSLGLAGGHK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 S(0.789)S(0.027)S(0.183)EAKPT(0.001)S(0.001)LGLAGGHK;S(0.783)S(0.115)S(0.102)EAKPTSLGLAGGHK 153.76 9.8533e-08 514540000.0 594500.0 448981.0 425141.0 374255.0 346194.0 449260.0 413973.0 406037.0 722290.0 515250.0 True False 591299.2780551596 463925.06117025355 484997.157408183 421635.6446267702 390279.75384740013 418203.71364428604 393947.5444595672 436337.54275410855 544291.3076901372 482366.3038722814 1.2258303975804268 0.9617692144870247 1.005454057455469 0.8740984626040729 0.8090941483979289 0.8669836808398125 0.8166978938974035 0.904577163146205 1.1283775490135646 1.0 18.879769604447866 5.426370297955425 1.1349600061839697 0.9034443535530172 2.2044573359817585 0.4763443798464857 0.09297916519354149 5.481368530747402 1.9106671076073327 0.026715052470654352 12.410052202208847 266913.3511377159 -5.426370297955425 1.3010129824287413 S(ph)SSEDAESLAPR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 S(0.796)S(0.102)S(0.102)EDAESLAPR;S(0.821)S(0.135)S(0.044)EDAESLAPR;S(0.956)S(0.043)S(0.001)EDAESLAPR;S(0.733)S(0.134)S(0.134)EDAESLAPR;S(0.972)S(0.014)S(0.014)EDAESLAPR;S(0.797)S(0.102)S(0.102)EDAESLAPR 311.92 2.7004e-46 16417660000.0 2998353.0 2960330.0 2728719.0 2849720.0 2716240.0 3290400.0 3121570.0 2924757.0 3409480.0 3199700.0 True False 2982210.200596332 3058862.794492728 3112898.9167492683 3210494.259811625 3062137.0635841805 3062942.3927684557 2970567.7335445806 3143017.218955116 2569259.33869134 2995492.40659901 0.9955659356794171 1.0211552490515798 1.0391943941809414 1.0717751287698043 1.0222483144468515 1.022517161459283 0.9916792734978995 1.0492489355109402 0.8577085133086343 1.0 21.514361745682887 1.257668478845361 24.99999033652203 0.9288541963584844 1.0274511271263387 0.5035584000828457 0.038843868101112504 150.99558012405214 197557.97559535623 0.024005714313598908 0.008734427178249921 18.09957923502419 -1.257668478845361 0.09859693076785425 S(ph)SSETILSSLAGSDIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 S(0.332)S(0.332)S(0.332)ET(0.004)ILSSLAGSDIVK 83.314 0.005832899999999999 66297000.0 42173.0 37403.0 30287.0 33198.0 36795.0 45061.0 36394.0 35516.0 45685.0 40210.0 True False 41945.94525386078 38647.93624440904 34551.14634067677 37400.86339613238 41480.6251489485 41946.03913218437 34633.48318141879 38166.38426659374 34426.543897636555 37643.76337448701 1.114286710299788 1.0266756769224248 0.9178451685862458 0.9935474044946512 1.1019255629755105 1.1142892041610595 0.9200324323813907 1.0138833327291854 0.9145351264472426 1.0 15.200123245934245 2.2237170364148278 24.999984399787913 0.9671483866435451 1.0384410601081013 0.2839337789471128 0.0636274260466991 392.5437855026359 661128.8172200716 0.02537571929500651 0.01881645522340813 167.38519262340535 -2.2237170364148278 0.07129267346455626 S(ph)SSFSDTLEESSPIAAIFDTENLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSFSDTLEESSPIAAIFDTENLEK 25 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 S(0.244)S(0.244)S(0.244)FS(0.244)DT(0.026)LEESSPIAAIFDTENLEK;S(0.199)S(0.199)S(0.199)FS(0.199)DT(0.199)LEES(0.004)S(0.004)PIAAIFDTENLEK 153.77 6.120099999999999e-08 58761000.0 94537.0 84361.0 85498.0 76737.0 73439.0 99448.0 105274.0 88208.0 114577.0 100468.0 True False 94028.02329604811 87168.90488769858 97535.37523806194 86451.89633197819 82791.02134294405 92573.3938354113 100181.4944342663 94790.52887114824 86341.03360314119 94056.04622501766 0.9997020613762297 0.9267761976636522 1.036992082409252 0.9191529923036795 0.8802307205735247 0.9842365010106922 1.0651255124481231 1.0078089891677289 0.9179743043480773 1.0 16.52123306735402 2.485192778782053 24.958243220053962 1.0046358538753057 0.9517975319366334 0.13921460062993596 0.052504552074892456 666.7238426955873 2061606.8198612374 0.018053271916536114 0.015770809812918077 305.6277461785343 -2.485192778782053 -0.05283832193867233 S(ph)SSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 44 0 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 S(0.325)S(0.325)S(0.325)IS(0.024)GVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 80.22 0.00073665 155640000.0 8629.1 10844.0 10569.0 9121.0 10283.0 12182.0 10272.0 5460.6 8601.4 7108.2 True False 8582.64188438314 11204.935984663574 12057.023332605162 10275.717664802798 11592.479097883881 11339.887013343472 9775.10411714936 5868.097700364956 6481.700222855002 6654.5485903638055 1.2897406590149978 1.6838010621620538 1.8118469147651084 1.5441644951969646 1.7420383877984604 1.704080578773491 1.4689357188411412 0.8818175448988863 0.974025530783696 1.0 12.700125089261821 1.848825165655206 3.6572701850515177 0.9443540030440996 1.6385741774379823 0.8275342914271474 0.13812789006542464 0.08717729475573961 1.9384872821126349 0.06936629224047412 0.0373827250600166 70.60332685562797 -1.848825165655206 0.6942201743938827 S(ph)SSLDGEHHDGYHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSLDGEHHDGYHR 14 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 S(0.456)S(0.456)S(0.089)LDGEHHDGYHR;S(0.373)S(0.373)S(0.253)LDGEHHDGYHR;S(0.468)S(0.468)S(0.064)LDGEHHDGYHR 176.29 3.7579e-06 2015200000.0 586201.0 707380.0 712210.0 679160.0 689350.0 712170.0 608790.0 288640.0 705180.0 498929.0 True False 583044.9589490537 730924.7156797597 812482.9773597051 765141.5863641563 777134.6364024355 662939.3641678558 579340.5018963551 310179.7824842218 531397.837927883 467086.9240653921 1.2482579342500015 1.5648580125472114 1.7394684704253411 1.6381139075882942 1.6637901777221165 1.4193061933693618 1.2403269542506985 0.6640729305468561 1.137685108593379 1.0 18.833331532398585 2.1164062565833377 2.6114166027561416 0.9037759533818477 1.5744147937858972 0.7168430421047687 0.17170329319491803 0.13377808651057918 1.8090891910923899 0.07972103241872286 0.050573959246833514 130.73933047479292 -2.1164062565833377 0.6706388404040495 S(ph)SSLEGFHNHFK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSLEGFHNHFK 12 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 S(0.487)S(0.487)S(0.026)LEGFHNHFK;S(0.438)S(0.438)S(0.123)LEGFHNHFK;S(0.333)S(0.333)S(0.333)LEGFHNHFK 190.27 1.1462e-05 1557400000.0 1374460.0 1458000.0 1343830.0 1394030.0 1384140.0 1752570.0 1704890.0 302889.0 2043200.0 1218600.0 True False 1367060.0600768628 1506528.6486203892 1533029.5832202472 1570514.055066882 1560402.0245594676 1631418.9610060211 1622417.9573877323 325492.1152191775 1539680.7374773095 1140827.904704051 1.198305243446425 1.3205573271905604 1.3437868909929402 1.3766441446523858 1.3677803796044599 1.4300307296824382 1.4221408423636108 0.2853121964119692 1.3496170028175523 1.0 20.121649745038557 1.7788831564050016 24.999999999994408 0.8044067515132035 1.354482346359984 0.4140702183671435 0.25329432122012957 44.53941693756563 27624.94060717175 0.10895354861749805 0.06054313786041329 60.101201806184896 -1.7788831564050016 0.5500755948467805 S(ph)SSLESLQTAVAEVTLNGDIPFHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLESLQTAVAEVTLNGDIPFHR 24 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(0.329)S(0.329)S(0.329)LES(0.011)LQT(0.001)AVAEVTLNGDIPFHR 91.819 0.005754 51843000.0 12035.0 10385.0 8478.2 10125.0 8050.5 11892.0 10349.0 6263.4 8621.3 10805.0 True False 11970.204897214207 10730.658447134936 9671.856866164555 11406.823961860358 9075.683455948083 11069.934030756895 9848.379332980794 6730.806712900759 6496.696134501338 10115.415649374096 1.183362633047598 1.0608222953051771 0.9561502167993476 1.1276673502354964 0.8972131023117822 1.0943627443961594 0.9736010535157965 0.6654009035523158 0.6422569630051069 1.0 13.304267981993393 1.8735359164153171 4.730084805711352 0.740331454545697 1.0445773338774775 0.5266783924542995 0.11910524157257407 0.15415145871114194 5.012968847411512 0.05253554677562732 0.03038226863118904 74.73704396212175 -1.8735359164153171 0.3042458793317805 S(ph)SSLESLQTAVAEVTLNGDIPFHRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSLESLQTAVAEVTLNGDIPFHRPR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(0.333)S(0.333)S(0.333)LES(0.001)LQTAVAEVTLNGDIPFHRPR;S(0.332)S(0.332)S(0.332)LES(0.005)LQTAVAEVTLNGDIPFHRPR 168.72 5.4268e-12 292160000.0 48963.0 55409.0 49186.7 49991.0 46705.6 53864.0 53595.0 47295.0 55022.0 42705.0 True False 48699.38864830073 57253.2550695522 56111.75982153944 56319.85547430727 52653.28131422009 50140.50846221743 51002.40509721771 50824.393059143804 41462.56535702653 39979.53033841006 1.2181080727082259 1.4320642234895522 1.4035122310486585 1.4087172860106951 1.3170059995335615 1.2541545145177777 1.2757129627462755 1.2712603832245275 1.0370948584453892 1.0 15.286973903597307 1.3041723711449398 0.8930920227167978 0.9834894661820829 1.3571687376650854 0.7574527324437047 0.06877027885130722 0.25083023086683953 0.4290027442329937 0.06462464945199788 0.023816618099059706 20.145236540951434 -1.3041723711449398 0.3736792714830025 S(ph)SSLESLQTAVAEVTLNGDIPFHRPRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLESLQTAVAEVTLNGDIPFHRPRPR 28 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(0.325)S(0.325)S(0.325)LES(0.024)LQTAVAEVTLNGDIPFHRPRPR 54.647 0.033591 101970000.0 15813.0 15426.0 25985.0 22964.0 21696.0 27801.0 22927.0 17570.0 28896.0 24055.0 True False 15727.864564989455 15939.445084786083 29643.46213433108 25871.240045448038 24458.85699773302 25879.18230651469 21817.9334203547 18881.162618652226 21774.967986562435 22519.78930547839 0.6984019411390913 0.7077972563850096 1.3163294617112475 1.1488224731815915 1.0861050548009752 1.1491751523722764 0.9688338165334012 0.8384253672417356 0.9669259197405208 1.0 14.458905709216108 4.313595344778937 13.036660154453916 1.0452128777849525 0.7022450745709929 0.5675000502378984 0.12390582911235327 0.7007986787950096 119.63502090229836 0.03464467093524903 0.09490332154780565 20587.108092063412 -4.313595344778937 -0.3429678032139596 S(ph)SSLKER ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSLKER 7 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 S(0.485)S(0.485)S(0.029)LKER;S(0.678)S(0.297)S(0.025)LKER 108.98 0.004319 1834200000.0 4304300.0 1937880.0 1416070.0 2319600.0 1221380.0 1215590.0 1672810.0 2102300.0 2989600.0 2731700.0 True False 4281126.127052686 2002381.164326801 1615440.347298912 2613261.1221660534 1376915.5033135677 1131559.124491069 1591889.7895452327 2259184.301263092 2252853.1385875912 2557360.567273966 1.674040877081396 0.7829874245934946 0.6316826684400239 1.0218586911863097 0.5384127373095844 0.4424714836739902 0.6224737371477176 0.8834046830053703 0.8809290201064739 1.0 21.286224152643324 4.737399669814306 5.268204298777608 0.7383629868183017 1.712630218546842 0.6886182697371164 0.18508903759859344 0.08674113241014163 8.480623486560553 0.045264295145980106 0.3065119218666417 54626.03389013676 -4.737399669814306 0.9742672317285404 S(ph)SSLSDLTHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSLSDLTHR 10 0 Q5T9C2-3;Q5T9C2;Q5T9C2-2 Q5T9C2-3 FAM102A Protein FAM102A 1 S(0.333)S(0.333)S(0.333)LSDLTHR;S(0.333)S(0.333)S(0.333)LSDLTHR 151.13 1.3109e-05 1140900000.0 647620.0 735670.0 727950.0 707380.0 660230.0 719710.0 711540.0 648110.0 746370.0 713520.0 True False 644133.2858773466 760156.3312280946 830439.0325451727 796934.2354706943 744306.3770101996 669958.1417151069 677120.0918532386 696475.2592358962 562437.1143456057 667982.5427247939 0.9642965866291014 1.1379883194661211 1.2432046938797174 1.193046501215269 1.1142602229903646 1.0029575608102785 1.0136793232517296 1.0426548819597539 0.8419937324280158 1.0 19.349450873762684 2.7629476840755 3.2372687779084632 0.988279139213074 1.143848029066311 0.4462849604997904 0.08354950502488814 0.25121195313343464 5.441206166528098 0.028469488126391513 0.02893499367775565 579.3589015677 -2.7629476840755 0.1555688898532369 S(ph)SSMSSIDLVSASDDVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSMSSIDLVSASDDVHR 18 0 Q9Y5P4-3;Q9Y5P4;A0A2U3TZL3;A0A2R8YFA1;A0A0A0MRE4 Q9Y5P4-3 COL4A3BP Collagen type IV alpha-3-binding protein 1 S(0.33)S(0.33)S(0.33)MS(0.005)S(0.006)IDLVSASDDVHR;S(0.333)S(0.333)S(0.333)MSSIDLVSASDDVHR 257.37 8.187999999999997e-31 262160000.0 160781.0 166113.0 138125.0 189904.0 155749.0 156672.0 158278.0 124061.0 159367.0 152771.0 True False 159915.3729604485 171641.97078757087 157571.79939597764 213945.82692870425 175582.71195335189 145841.63340621797 150621.48845932318 133319.06178899336 120093.13825839195 143021.02398616663 1.118124933687483 1.2001170597420177 1.1017387164786234 1.4959047346031982 1.2276706393203751 1.0197216419057673 1.0531422881847894 0.9321640838055273 0.8396887038790022 1.0 17.125867712147755 2.5482339148276476 2.258993631426777 0.948820723579582 1.2345960065705437 0.5737797885363112 0.11269137355376672 0.23291049639703115 2.37027203726693 0.04481890821562733 0.03921632235067169 353.3734485918311 -2.5482339148276476 0.28577528299096167 S(ph)SSPAGETEGDREPQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPAGETEGDREPQAR 17 1 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(0.333)S(0.333)S(0.333)PAGETEGDREPQAR 85.23100000000002 0.003081 61149000.0 29472.0 24543.0 21338.0 19956.0 25750.0 26258.0 22036.0 22505.0 26441.0 19280.0 True False 29313.326026647042 25359.898918443203 24342.204926779155 22482.42755386522 29029.109867792464 24442.846264683365 20970.034494305237 24184.437378074465 19924.96984124784 18049.53389356156 1.624048920016898 1.405016831348167 1.3486334367593975 1.2455960185146342 1.6083024658131158 1.3542092781355624 1.1618047655948307 1.3398926266290614 1.103904951714862 1.0 14.139673961363847 2.2165328976093104 0.04931518860551867 2.105269844378433e-10 2.6000331756118196 0.6001211593125074 0.12078388177580475 45.85855873552526 1.3923273620226277 33.42399282652412 38.793785017847526 164.63906749491062 -2.2165328976093104 2.6000331754012924 S(ph)SSPAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(0.315)S(0.315)S(0.315)PAGET(0.055)EGDREPQARPGEGTAPLPPPGQK;S(0.333)S(0.333)S(0.333)PAGETEGDREPQARPGEGTAPLPPPGQK 222.52 2.7449e-35 787959000.0 75805.0 78184.0 79129.0 91620.0 82854.0 103068.0 94093.0 91166.0 128444.0 107800.0 True False 75396.8743027272 80786.3071767739 90269.67539840241 103219.08260598971 93404.96578586701 95943.15175597488 89541.36211983403 97969.26985156782 96790.69726142111 100920.11170777677 0.7470946377967318 0.8004975996330433 0.8944666615093169 1.0227801065546758 0.9255337137985882 0.9506841612877607 0.8872499307086487 0.9707606164294251 0.9590823436827661 1.0 16.622854182773754 4.214381013384598 2.6143581453569738 0.9535402802387766 0.7580003890134698 0.803607027690461 0.03648129516065078 0.11073963127396245 1.4959383180463588 0.009175789903945577 0.02928972811246568 16382.531564240056 -4.214381013384598 -0.1955398912253068 S(ph)SSPAPADIAQTVQEDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 S(0.333)S(0.333)S(0.333)PAPADIAQTVQEDLR;S(0.333)S(0.333)S(0.333)PAPADIAQTVQEDLR;S(0.366)S(0.366)S(0.267)PAPADIAQTVQEDLR;S(0.333)S(0.333)S(0.333)PAPADIAQTVQEDLR;S(0.333)S(0.333)S(0.333)PAPADIAQTVQEDLR;S(0.333)S(0.333)S(0.333)PAPADIAQTVQEDLR 107.34 0.00044372 111495000.0 93152.2 98468.2 85231.5 96223.0 95902.9 108577.0 100104.0 99366.1 123442.0 110786.0 True False 92650.67890538248 101745.65451171604 97231.35435452155 108404.8219340335 108115.56585397717 101071.32755276581 95261.58708558405 106781.3029528319 93021.37313805509 103715.54263133346 0.8933152790292765 0.9810068185573732 0.9374810359922566 1.045212888866315 1.0424239521966732 0.9745051222653603 0.9184890197624498 1.0295593142909734 0.8968894225305093 1.0 16.662272584565834 5.303078329367785 1.4182332093233534 0.9854080063094897 0.6460728985321783 0.22015836848327186 0.04868351928788058 7.942392811901913 4.677684725322798 0.012869201489158932 5.692017837038743 200945.52053375347 -5.303078329367785 -0.33933510777731135 S(ph)SSPELVTHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 S(0.333)S(0.333)S(0.333)PELVTHLK;S(0.462)S(0.462)S(0.075)PELVTHLK;S(0.399)S(0.399)S(0.202)PELVTHLK 241.15 6.6435e-16 3204080000.0 5134400.0 5381370.0 5029000.0 4640950.0 4693520.0 5903400.0 5902650.0 5149090.0 6546760.0 5284890.0 True False 5106756.960885466 5560485.647343137 5737039.487148393 5228493.794152671 5291211.951327426 5495311.853108835 5617116.269187274 5533341.242349224 4933398.72008955 4947603.795578032 1.032167726415296 1.1238744808775663 1.1595591975808424 1.0567729369974384 1.0694494082279784 1.1107016810885955 1.13532055137633 1.118388106843701 0.9971288979321308 1.0 22.238298543154805 1.2341495152224928 24.87183633357793 0.9985643679473031 1.103738220810697 0.5560623560289153 0.03645534808175091 78.34156638639604 441695.57337388454 0.03136136923562466 0.008900886540869395 17.145474757833963 -1.2341495152224928 0.10517385286339387 S(ph)SSPGKPQAVSSLNSSHSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR;S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR;S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR 263.16 1.8132999999999999e-31 6498400000.0 2401770.0 2869950.0 3041880.0 2991190.0 3159420.0 3727000.0 3789000.0 3437690.0 3982300.0 3783760.0 True False 2388839.1371817347 2965474.5508285915 3470150.2635050616 3369874.347306377 3561753.40965052 3469361.2624143083 3605711.59461438 3694227.884036113 3000915.525086088 3542277.197360089 0.674379503377668 0.8371661464096134 0.97963825814965 0.9513299382153952 1.0054982180121155 0.9794155197678708 1.0179078015976746 1.0428963286072774 0.8471712849921923 1.0 21.756245682489386 4.608657134298732 1.660254974493417 0.9878946134738507 0.6060815809324965 0.7780837254880457 0.05098324813365134 0.31305389817139 1.0296775029184995 0.013225265386660792 0.1766397096597494 40612.25779506472 -4.608657134298732 -0.3818130325413541 S(ph)SSPPPRK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPPPRK 8 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.854)S(0.058)S(0.087)PPPRK;S(0.333)S(0.333)S(0.333)PPPRK 103.55 0.0029106 4296580000.0 1037480.0 1004380.0 956410.0 889950.0 919270.0 685670.0 1025080.0 1090570.0 1451950.0 1186810.0 True False 1031894.3229548648 1037810.1811394684 1091064.2147352535 1002617.5787513714 1036333.5855598279 638271.2467935652 975492.9642141236 1171953.871202252 1094136.3776332124 1111066.7697208386 0.9287419541978865 0.9340664390495845 0.9819969820620134 0.9023918328538295 0.9327374499916077 0.574467047515006 0.8779787055095 1.0548005782737178 0.9847620390159989 1.0 20.083514087626916 1.7628275286001842 11.713854047766628 1.0144272764889557 0.8739349984845205 0.2554608541653298 0.10723029327665264 0.3932688160457028 184.06308301910133 0.05345800285741949 0.02945408315010629 57.9198633551152 -1.7628275286001842 -0.1404922780044352 S(ph)SSPTLTPSQEGSPVFAGFEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPTLTPSQEGSPVFAGFEGR 22 0 P0C860 P0C860 MSL3P1 Putative male-specific lethal-3 protein-like 2 1 S(0.333)S(0.333)S(0.333)PT(0.001)LTPSQEGSPVFAGFEGR 126.26 2.0939e-05 88499000.0 40185.0 45512.0 40601.0 49089.0 44879.0 52112.0 49126.0 42325.0 43411.0 51092.0 True False 39968.648424973246 47026.839407415006 46317.26788978165 55303.66236679146 50594.07463132655 48509.62009845306 46749.58770045559 45483.50642199519 32712.94072759769 47831.264817938136 0.8356176358101203 0.9831820167502355 0.9683471274715552 1.1562241261504538 1.0577615880304356 1.0141822567957792 0.9773855631541467 0.9509158203346848 0.6839238069934829 1.0 15.545666321039684 1.4582762077116944 5.332701036230855 0.8327867025126977 1.0029576661718838 0.25829385089243917 0.10377727120338241 0.20660227167739037 12.447132720973299 0.06462996019953253 0.025885258772500197 28.726069555359313 -1.4582762077116944 0.17017096365918605 S(ph)SSPVTELASRS(ph)PIRQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.536)S(0.12)S(0.343)PVT(0.001)ELAS(0.261)RS(0.739)PIRQDR 76.471 0.074662 614970000.0 245990.0 330020.0 309830.0 372350.0 325600.0 327840.0 372040.0 276810.0 399090.0 366320.0 True False 244665.6171720585 341004.51619869715 353451.37090936326 419489.47182209423 367063.2300176012 305177.1924523497 354043.00386918284 297466.9678126991 300739.6170320186 342941.14397766953 0.7134332566056577 0.9943528858727476 1.0306473198572468 1.2232112687225687 1.070338851034749 0.8898821206248183 1.032372493316918 0.8673994737478001 0.8769423625985254 1.0 18.387601474807433 2.084362003675209 1.678834575775116 0.9096296703330861 1.0098691601005088 0.04329851695900855 0.12927251069097903 0.993730601064438 5.323761642040351 0.08061022944728091 0.04284227154933911 121.4400685429919 -2.084362003675209 0.1002394897674227 S(ph)SSQRSPS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 2 S(0.283)S(0.283)S(0.283)QRS(0.283)PS(0.582)PGPNHT(0.114)S(0.114)NS(0.029)S(0.029)NASNATVVPQNSSAR;S(0.27)S(0.27)S(0.27)QRS(0.27)PS(0.576)PGPNHT(0.082)S(0.082)NS(0.082)S(0.082)NAS(0.015)NAT(0.001)VVPQNSSAR 89.954 0.00040295 240466000.0 30276.0 64806.0 69853.0 86885.0 80469.0 74699.0 85924.0 66935.0 65467.0 80918.0 True False 30112.99737997981 66963.02853394568 79687.69522683964 97884.63209148018 90716.2501728695 69535.23395253188 81767.52785844446 71930.029589043 49333.5350628559 75753.74396261472 0.3975116714342316 0.8839566869063612 1.0519307833308722 1.2921424997791169 1.1975150722271752 0.9179115158565399 1.079385962742615 0.9495244172293482 0.6512356021268404 1.0 16.209029571934632 4.7152084460864625 2.724244520354091 1.0262085798364293 0.2948418526745097 0.5665831632459023 0.1622291962359166 0.31139410295896724 3.232236351935718 0.042115558829087095 0.49992967341172395 51904.91044791159 -4.7152084460864625 -0.7313667271619196 S(ph)SSSELLLTGPGAEEDPLPLIVQDQYVQEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSSELLLTGPGAEEDPLPLIVQDQYVQEAR 31 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.25)S(0.25)S(0.25)S(0.25)ELLLT(0.002)GPGAEEDPLPLIVQDQYVQEAR 45.511 0.068213 54263000.0 8491.4 5240.0 5075.0 6915.9 4519.3 6525.2 5458.3 5073.9 8066.8 6612.0 True False 8445.683245883234 5414.410232353107 5789.51588730923 7791.452230896799 5094.8060670102695 6074.128282668592 5194.261176269116 5452.540182742144 6078.845229582015 6190.016499182001 1.3644039958535352 0.874700452425064 0.9352989427531094 1.25871267579439 0.8230682531595092 0.9812782055542625 0.8391352716031577 0.8808603633710325 0.9820402304881293 1.0 12.595727539538837 3.216872411940144 24.985958108598627 0.9073308697928373 1.0792392386261123 0.2853450265810564 0.1442821845294559 322.1066233011258 371083.004907057 0.040377579839003266 0.04829961775518041 1647.6782615986683 -3.216872411940144 0.17190836883327498 S(ph)SSSGDQSSDSLNSPTLLAL ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSGDQSSDSLNSPTLLAL 20 0 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 1 S(0.225)S(0.225)S(0.225)S(0.225)GDQS(0.045)S(0.045)DS(0.009)LNSPTLLAL;S(0.248)S(0.248)S(0.248)S(0.248)GDQS(0.003)S(0.004)DS(0.001)LNSPTLLAL 84.17299999999999 0.0029656999999999995 30639000.0 68176.0 64543.0 63157.0 64709.0 69123.0 88944.0 89657.0 91656.0 108019.0 96277.0 True False 67808.94799106571 66691.27473793254 72048.95662951509 72901.15276523685 77925.40432588027 82795.51063165502 85319.9483869996 98495.83613973754 81399.16483044317 90132.51943311338 0.7523250034232781 0.739924670445095 0.7993669441691579 0.8088218683306219 0.8645648076409101 0.9185975400709497 0.9466056083155964 1.092789114952351 0.9031053979451761 1.0 16.45976009780122 2.863476707004886 0.9129228948723628 1.0121896192400115 0.752593721683236 0.807374914679584 0.04681943648356189 0.22182046080502216 0.40204454552976304 0.02639239154886479 0.028248691787445275 730.2586450553898 -2.863476707004886 -0.2595958975567755 S(ph)SSSGSDDYAYTQALLLHQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSGSDDYAYTQALLLHQR 20 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 S(0.517)S(0.241)S(0.241)S(0.001)GSDDYAYTQALLLHQR;S(0.328)S(0.328)S(0.328)S(0.016)GS(0.001)DDYAYTQALLLHQR 316.96 1.1279999999999996e-66 930010000.0 184171.0 170333.0 170284.0 192897.0 195241.0 202160.0 171250.0 152894.0 211295.0 190491.0 True False 183179.4437993218 176002.43093652735 194258.50706493872 217317.7404218249 220103.78406592878 188185.1550334523 162965.98326147083 164303.72666000074 159224.17845794273 178333.70129244996 1.027172331823727 0.9869274829209116 1.0892977920442173 1.2186016375303337 1.2342242799356244 1.0552416826971303 0.9138260580047203 0.9213274073785895 0.8928440182869896 1.0 17.444219841971 2.3473835718794636 4.308574420591664 0.9247030278198614 1.1119537273247762 0.5555133691168985 0.07547451575427766 0.17555503627162347 5.782351687806369 0.03058174668704089 0.025052745599747517 222.52744006760045 -2.3473835718794636 0.1872506995049148 S(ph)SSSPELQTLQDILGDPGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSPELQTLQDILGDPGDK 20 0 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 S(0.247)S(0.247)S(0.247)S(0.247)PELQT(0.012)LQDILGDPGDK;S(0.235)S(0.235)S(0.235)S(0.235)PELQT(0.061)LQDILGDPGDK 159.04 4.372e-11 32491000.0 212600.0 155534.0 157455.0 140214.0 138728.0 194046.0 183188.0 180674.0 238230.0 181694.0 True False 211455.38522208075 160710.85516771142 179623.2953766057 157965.07802353488 156394.1884947227 180632.0567551508 174326.49659388216 194156.81132398237 179521.4086184514 170098.13336394035 1.2431375996916605 0.9448125737150566 1.0559980396274273 0.9286702616868482 0.9194350661103564 1.0619285066972028 1.0248583752585623 1.1414399881071375 1.0553990515248577 1.0 17.37600778356649 2.1619968623116796 2.6103801156556417 1.0793261591268155 1.012398325764274 0.011309447795984084 0.0944821329946011 0.7183351253950064 9.854956350668937 0.041631512194540005 0.027582387160119647 145.21011264178262 -2.1619968623116796 -0.0669278333625416 S(ph)SSSPELQTLQDILGDPGDKADVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 S(0.326)S(0.326)S(0.326)S(0.021)PELQT(0.001)LQDILGDPGDKADVGR;S(0.33)S(0.33)S(0.33)S(0.009)PELQTLQDILGDPGDKADVGR 92.632 0.0072783 141122000.0 78040.0 66875.0 53827.0 71123.0 63898.0 81804.0 84918.0 85679.0 110749.0 82637.0 True False 77619.84131105909 69100.89394820885 61405.37372732885 80127.16450759454 72035.0315468817 76149.08202590284 80810.19192173766 92072.8020491465 83456.39291056915 77363.03591090493 1.0033194845203581 0.8932029765195465 0.7937301452084468 1.0357293191010875 0.9311298438422294 0.984308347381815 1.04455817911286 1.1901394634406806 1.0787631577266645 1.0 16.239356790285445 2.265411646810404 2.213703205748612 1.111234751128199 0.9282093364217451 0.4487342336536262 0.07585161064900454 0.23953197792431016 2.3971126096684157 0.03424201669268173 0.023768056543874008 184.2517607698221 -2.265411646810404 -0.18302541470645395 S(ph)SSSQTLTQFDSNIAPADPDTAIVHPVPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSQTLTQFDSNIAPADPDTAIVHPVPIR 30 0 Q96D71;Q96D71-3;H0YE73 Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.309)S(0.309)S(0.309)S(0.071)QT(0.001)LTQFDSNIAPADPDTAIVHPVPIR;S(0.458)S(0.458)S(0.084)S(0.001)QTLTQFDSNIAPADPDTAIVHPVPIR 201.99 1.2705999999999994e-25 1037920000.0 26640.9 14445.900000000001 17992.0 19869.4 27579.1 27635.5 27587.0 15295.6 19058.9 28110.6 True False 26497.468354482262 14926.72304876904 20525.117210732526 22384.864002744525 31091.13491086739 25725.12293196959 26252.51141742595 16437.035341483028 14362.089471175774 26316.557441304536 1.0068744140863113 0.5671989234177397 0.7799316934409442 0.850600009240224 1.1814286492529233 0.9775261444946186 0.9975663221140747 0.6245891157361131 0.5457434735986437 1.0 14.683683157103218 -2.3979037901097024 2.2062853834600142 2.256557509644351 0.8335801249881009 0.05640231560494191 0.19982377722800898 14584891.882203247 1826715.1063965552 91133099.67734712 0.05166201639444618 0.00400033359919717 2.3979037901097024 -1.4229773846562503 S(ph)SSTGNLLDKDDLAIPPPDYGAASR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSTGNLLDKDDLAIPPPDYGAASR 25 1 Q9UQB8;Q9UQB8-2;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;Q9UQB8-6;B4DWA1;I3L3C6 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 S(0.352)S(0.352)S(0.281)T(0.015)GNLLDKDDLAIPPPDYGAASR;S(0.35)S(0.35)S(0.29)T(0.01)GNLLDKDDLAIPPPDYGAASR;S(0.312)S(0.312)S(0.312)T(0.065)GNLLDKDDLAIPPPDYGAASR;S(0.343)S(0.343)S(0.305)T(0.009)GNLLDKDDLAIPPPDYGAASR;S(0.403)S(0.403)S(0.195)TGNLLDKDDLAIPPPDYGAASR;S(0.348)S(0.348)S(0.298)T(0.005)GNLLDKDDLAIPPPDYGAASR 213.84 9.839e-27 2512390000.0 2938930.0 1903075.0 1590054.0 1887867.0 1386316.0 1905291.0 1745428.0 2072484.0 3162791.0 2364670.0 True False 2923107.1274258182 1966417.7009418702 1813919.782202872 2126870.768632638 1562855.1252613033 1773582.7177425865 1660994.9794575325 2227143.279940515 2383363.5372780925 2213754.736104157 1.3204295307663596 0.8882726116274475 0.8193860650503098 0.960752667829671 0.7059748308033755 0.8011649569020458 0.7503066859071342 1.0060478894152112 1.0766158953418747 1.0 21.07806396280466 4.738184197919981 7.016611990476578 0.8805921194803951 1.326821466180254 0.5565900702597539 0.11505241455359246 0.08072785075094836 30.83910545683165 0.028372295228325812 0.17168872042980968 54724.80187393768 -4.738184197919981 0.4462293466998589 S(ph)SSVPHPFQVTLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSVPHPFQVTLLR 14 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 S(0.499)S(0.499)S(0.001)VPHPFQVTLLR 147.92 5.09e-06 296240000.0 462110.0 417370.0 344590.0 443170.0 355840.0 471760.0 442380.0 431610.0 644510.0 503050.0 True False 459622.0511052473 431261.9081445067 393105.27677002636 499275.27656075585 401154.1147710786 439148.3416035887 420980.389344289 463818.92987117154 485679.146491534 470944.918317227 0.975957130501719 0.915737470287364 0.8347160389258769 1.0601564156266055 0.8518068656616493 0.9324834487496897 0.8939057901899219 0.9848687433096891 1.031286521207098 1.0 18.845198806636713 1.5684923032930995 4.466805418093657 1.0138095407450964 0.9228560168505754 0.2883470380714255 0.0600404708477384 0.196107996640121 8.658809663956132 0.0335035647915015 0.01473705792981936 37.0247643693817 -1.5684923032930995 -0.09095352389452105 S(ph)SSYLDNLVWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSYLDNLVWR 11 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 S(0.361)S(0.361)S(0.279)YLDNLVWR 72.29 0.048985 19222000.0 34440.0 45963.0 34560.0 39989.0 41209.0 45968.0 38055.0 40281.0 56442.0 43241.0 True False 34254.57886664374 47492.85066977974 39425.74759909497 45051.603299835464 46456.72188512077 42790.340357032735 36214.13426578263 43286.97276277347 42532.62538405167 40481.322359517384 0.8461823100151346 1.1732040334056406 0.9739244002197412 1.112898509088441 1.1476088027099376 1.0570390951414286 0.8945887178329412 1.0693072814751186 1.0506728265029617 1.0 15.304968797307914 -0.35137323696040235 7.861356596404271 1.000004730041194 1.0404473347271763 0.010109368748103198 0.09950315293451202 0.0 0.0 0.08987220224161145 0.021183081215070773 0.4452734115533781 0.35137323696040235 0.040442604685982264 S(ph)STAKPEVEHPEPDHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTAKPEVEHPEPDHSK 17 1 Q9NZI5-3;Q9NZI5;B7Z1S6;F8WFB0 Q9NZI5-3 GRHL1 Grainyhead-like protein 1 homolog 1 S(0.499)S(0.499)T(0.002)AKPEVEHPEPDHSK 173.43 8.9288e-10 229770000.0 208830.0 120190.0 119300.0 110340.0 115900.0 175250.0 155190.0 101580.0 237160.0 139200.0 True False 207705.6824831941 124190.45149361085 136096.40302581099 124309.032686585 130659.17800687953 163135.379994126 147682.86681662875 109160.41541278835 178715.095781186 130316.13682488432 1.5938600356324557 0.9529936546576344 1.0443557209549117 0.9539036048438765 1.0026323768518106 1.251843278728738 1.1332661511834212 0.8376584671127527 1.3713965141656943 1.0 16.991656215869977 4.744821911267372 24.928324437788074 1.0497332234985426 1.5938602878497166 0.5369090613137191 0.14816608330745581 511.41238762217284 2036047.5853466128 0.03430480369792387 0.32130621692881856 55567.634742284754 -4.744821911267372 0.544127064351174 S(ph)STGPEPPAPTPLLAER ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTGPEPPAPTPLLAER 17 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.863)S(0.137)TGPEPPAPTPLLAER 342.74 9.4446e-73 127590000.0 311390.0 270900.0 209320.0 224390.0 243230.0 236510.0 229470.0 238540.0 301780.0 272590.0 True False 309713.510838681 279916.7427374922 238790.4365579443 252797.7509927748 274203.8987628411 220160.6203846549 218369.65943947283 256341.06608157678 227410.36264482353 255193.0728239596 1.2136438791672506 1.0968822140818366 0.9357246022217446 0.9906136878847132 1.0744958541723262 0.8627217735511528 0.8557037110098644 1.0044985282904175 0.8911306256408399 1.0 17.96122964233991 6.65109421008841 0.6528105782538959 0.9390607858450686 4.616223962615974 0.6105827497041436 0.06714727467547485 22.13649512683862 0.9080709760721934 0.026739876273114492 102.18636547457525 4478104.357010446 -6.65109421008841 3.6771631767709057 S(ph)STPGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPGLK 7 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 S(0.369)S(0.316)T(0.316)PGLK 137.06 0.0030621 2856600000.0 6033600.0 4949400.0 4519800.0 4069400.0 4092600.0 4814600.0 6023000.0 5433900.0 7292700.0 5214500.0 True False 6001115.7679959815 5114137.787024517 5156148.5531941345 4584585.622755017 4613768.351259318 4481778.034349319 5731644.479905636 5839405.210785108 5495511.80217344 4881706.145641948 1.2293070473636283 1.0476127883260788 1.0562185431413542 0.939135926247388 0.9451139035433694 0.9180761603912481 1.1741068202194953 1.1961812195513095 1.1257358878676988 1.0 22.218954024012177 2.2162914013691934 24.993990668268232 1.147541342760401 1.017930626091171 0.19235119834789915 0.09686294632541904 315.2978247538104 353874.31700801634 0.03748396134032049 0.02770538095003649 164.5475428152855 -2.2162914013691934 -0.12961071666923019 S(ph)STPLHSPSPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 S(0.333)S(0.333)T(0.333)PLHSPSPIR 135.81 7.795e-05 162550000.0 139440.0 155340.0 128760.0 134640.0 117490.0 139180.0 145120.0 143140.0 191230.0 159540.0 True False 138689.27053324055 160510.39799498717 146888.28879801705 151685.41019504995 132451.65508221125 129558.81419447922 138099.99118776433 153821.83365019227 144103.9288507177 149358.02061093424 0.9285692858404643 1.0746687545699605 0.9834643509413489 1.0155826220419617 0.886806443607319 0.8674379431685802 0.9246238710373902 1.0298866644121236 0.9648221652996927 1.0 17.18841518771271 5.0614805776178144 21.772538727494695 0.9711127869013078 0.00029233361820927845 0.04334762225399502 0.060991499494915266 3087.232946828044 1188468.639611155 0.01520374262440197 12505.648042017967 115207.4535956105 -5.0614805776178144 -0.9708204532830985 S(ph)STPPLHVHVDENTPVHVHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-9;Q5BJF6-3;Q5BJF6-4 Q5BJF6-9 ODF2 Outer dense fiber protein 2 1 S(0.832)S(0.143)T(0.025)PPLHVHVDENTPVHVHIK;S(0.839)S(0.138)T(0.023)PPLHVHVDENTPVHVHIK 243.39 1.9346e-30 1645430000.0 1635860.0 1517110.0 1254790.0 1372380.0 1413380.0 1637350.0 1603230.0 84807.0 2157860.0 384670.0 True False 1627052.711521134 1567606.0892376394 1431453.5251698014 1546123.1672867094 1593365.5652404085 1524163.8484073181 1525675.6399666434 91135.72898122008 1626084.3168425958 360120.031267444 4.518084444774469 4.353009977591202 3.9749344687430868 4.293355084539791 4.424540227969412 4.2323773077632385 4.236575329056318 0.2530704239374508 4.515395356152739 1.0 18.4581183244689 1.768497779403507 24.999999971040097 1.8803754802789496 4.283726057202379 0.5273262602084279 1.0269552137406732 16.644707859244612 13907.313600204869 0.43344081388472816 0.2404092235690752 58.681036918373735 -1.768497779403507 2.4033505769234296 S(ph)SVEKENQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVEKENQK 9 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(0.98)S(0.02)VEKENQK 137.4 0.00010043 879080000.0 1511500.0 1089300.0 900740.0 822360.0 871910.0 976450.0 1305600.0 1355800.0 2008400.0 1456200.0 True False 1503362.2519434374 1125556.6920042436 1027556.3626275691 926470.69168153 982942.5702845419 908950.3098160587 1242443.1401236576 1456976.680612901 1513456.7311812027 1363264.069284457 1.102766724228648 0.8256336518830281 0.7537471175096014 0.6795973814286846 0.7210214018186981 0.6667455926518652 0.9113737889210157 1.0687413491192732 1.1101713639204018 1.0 20.378633613893538 1.9295708612775901 3.539979995178458 1.0625831507112613 0.7828747788581563 0.5026717516500978 0.11869031527256728 0.20046452207895804 4.567507652179807 0.06077975504638046 0.0344060317059662 85.02974199010069 -1.9295708612775901 -0.27970837185310504 S(ph)SVEMDCFFPLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVEMDCFFPLVK 13 0 H7BXZ5;O60229-5;O60229 H7BXZ5 KALRN Kalirin 1 S(0.5)S(0.5)VEMDCFFPLVK 115.8 0.00066633 18609000.0 29216.0 30482.0 22842.0 25651.0 21870.0 29610.0 26560.0 26619.0 40269.0 35941.0 True False 29058.70430220275 31496.574943241878 26057.955053776812 28898.413969943704 24655.014866354224 27563.130394442644 25275.191330946956 28605.444948543176 30345.244526954684 33647.2146093618 0.8636288215702 0.9360826834824675 0.7744461274523033 0.8588649701156298 0.732750545701764 0.8191801524864897 0.7511822783664993 0.8501578891640014 0.9018649798878628 1.0 15.03819945985057 1.0082414389059662 2.160130175603009 0.9984890463598934 0.8197373832382867 0.49559283850338065 0.05638113861169387 0.25714109223406895 2.58294149840466 0.05407580202997038 0.0149787766854039 10.191578146908505 -1.0082414389059662 -0.17875166312160673 S(ph)SVKTPEPVVPTAPEPHPTTSTDQPVTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVKTPEPVVPTAPEPHPTTSTDQPVTPK 29 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.467)S(0.332)VKT(0.201)PEPVVPTAPEPHPTTSTDQPVTPK 222.21 1.0388e-34 1679100000.0 584860.0 520930.0 492980.0 488550.0 513500.0 756750.0 649030.0 695300.0 1056300.0 749010.0 True False 581711.1787440546 538268.8401411645 562387.2989410255 550400.3799078405 578891.1812470463 704437.6536978872 617633.9393646268 747186.8166618597 795989.0186948342 701207.5405402763 0.82958488765801 0.7676312775051327 0.8020268842341732 0.7849322035010636 0.8255632573503332 1.0046065008872012 0.8808147426491498 1.065571565425775 1.1351689374040805 1.0 19.419481984854812 2.389349644648068 0.9439466495906194 1.0705991398413797 0.7874272647982214 0.777776044053444 0.05849414141318463 0.2457765359639165 0.43179622115714206 0.03980235911026715 0.025930085853345792 245.10357436426378 -2.389349644648068 -0.2831718750431582 S(ph)TCGDSEVEEESPGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 STCGDSEVEEESPGKR 16 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 S(0.975)T(0.025)CGDSEVEEESPGKR;S(0.974)T(0.026)CGDSEVEEESPGKR 153.04 2.9962e-07 682240000.0 265440.0 250320.0 228090.0 240950.0 213345.0 238140.0 223451.0 209464.0 239080.0 251060.0 True False 264010.9005331564 258651.74987836447 260203.0894061794 271454.2452948396 240513.22115511374 221677.94232126197 212641.8214642857 225095.26731663992 180161.93750786767 235037.13585672004 1.1232731354167749 1.100471842185994 1.1070722439572303 1.1549419384531627 1.0232988088390083 0.9431613498574885 0.90471584709028 0.9577008607433817 0.7665254124679914 1.0 17.842529194987197 2.889332969983416 2.216274966045784 0.910956044793792 1.1191374042203837 0.736021947639496 0.058412909413723874 0.1539964776874116 1.4930887952262992 0.01899543466928633 0.020744092085219108 775.0557989293026 -2.889332969983416 0.20818135942659166 S(ph)TDKEAQGQQFHHHR ddPTM_BT-474_Trastuzumab_2h_R1 4 STDKEAQGQQFHHHR 15 1 A6ND36 A6ND36 FAM83G Protein FAM83G 1 S(0.5)T(0.5)DKEAQGQQFHHHR;S(0.866)T(0.134)DKEAQGQQFHHHR;S(0.99)T(0.01)DKEAQGQQFHHHR;S(0.5)T(0.5)DKEAQGQQFHHHR 288.57 3.3088e-35 550503000.0 484086.0 406926.0 285226.0 391429.0 365278.0 406055.0 359689.0 51029.100000000006 573979.0 267872.0 True False 481479.73476301075 420470.28591803845 325383.34157116467 440983.8712658804 411793.9881276699 377985.3736006549 342289.468924585 54837.15056251943 432529.56637455453 250776.1796232429 1.9199580099129374 1.6766755381222327 1.2975049785829296 1.7584759123789138 1.6420777633120274 1.5072618705992191 1.3649201827654778 0.21866969440600295 1.7247633607959552 1.0 17.936040792387367 1.9790237517090479 14.526892538746687 0.8686696821707962 1.6105576213186799 0.3665951367039815 0.37473852481826386 3.2768235094536604 2267.7583627382974 0.14623874440366175 0.09663745270482015 95.28482741863638 -1.9790237517090479 0.7418879391478836 S(ph)TDSPGADAELPESAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 STDSPGADAELPESAAR 17 0 A0A0J9YWL0;Q9Y4K1;A0A494C1M5 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 S(0.994)T(0.006)DSPGADAELPESAAR;S(0.99)T(0.01)DSPGADAELPESAAR;S(0.991)T(0.009)DSPGADAELPESAAR;S(0.998)T(0.002)DSPGADAELPESAAR 383.24 1.157699999999999e-121 1386100000.0 725470.0 736500.0 669361.0 710590.0 729854.0 719370.0 582327.0 519144.0 664440.0 667090.0 True False 721564.1501272949 761013.9572763488 763601.2106098904 800550.6211415649 822796.5807164194 669641.6451148322 554157.6183048325 557885.1614398167 500697.6650398517 624515.745075517 1.155397851562642 1.2185664865572385 1.2227093017767792 1.2818742000568162 1.3174953349125347 1.0722574256856543 0.8873397070842838 0.8933084006910934 0.801737456562135 1.0 19.252378419458225 2.435385510586864 3.1500424430629645 0.8869033853669551 1.238643237230351 0.8751945481012947 0.060986645866262415 0.07859455612038294 1.6103468026317649 0.022520581012547374 0.018871334472654138 272.51192438884357 -2.435385510586864 0.35173985186339596 S(ph)TEDLSPQK ddPTM_BT-474_Trastuzumab_2h_R1 3 STEDLSPQK 9 0 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 Q96RT1-7 ERBB2IP Protein LAP2 1 S(0.989)T(0.011)EDLSPQK;S(0.993)T(0.007)EDLSPQK;S(0.988)T(0.012)EDLSPQK 196.88 3.0333e-05 896270000.0 1616420.0 1455500.0 1291940.0 1186300.0 1180340.0 1621110.0 1537570.0 1404830.0 1750900.0 1469390.0 True False 1607717.374321144 1503945.4376316692 1473833.9222562131 1336485.458365922 1330649.3025767063 1509046.4813824696 1463191.8650122022 1509665.5481821958 1319414.1558579784 1375612.2721919282 1.1687285776822671 1.0932916694871095 1.071402132744699 0.9715568008391924 0.9673142130786773 1.0969998682680584 1.0636658996075419 1.0974498982745076 0.9591468341261578 1.0 20.39164246101354 4.514043464859744 1.8491438096347739 1.0340632178523952 1.1790438484928392 0.44550468128482956 0.049846476048783714 0.5621999101855205 2.778967056223659 0.013990858881459619 0.12110997486544413 32662.051922056693 -4.514043464859744 0.14498063064044397 S(ph)TELLLGVK ddPTM_BT-474_Trastuzumab_2h_R1 5 STELLLGVK 9 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 S(0.994)T(0.006)ELLLGVK;S(0.993)T(0.007)ELLLGVK;S(0.992)T(0.008)ELLLGVK;S(0.995)T(0.005)ELLLGVK;S(0.986)T(0.014)ELLLGVK 164.64 6.5146e-05 393282000.0 925185.0 789882.0 698869.0 621416.0 623092.0 850384.0 801625.0 805051.0 1057013.0 858599.0 True False 920203.9067577176 816172.7448762475 797263.6805217566 700087.2018847812 702439.0728443702 791598.9556686159 762847.3362451195 865127.9935861466 796526.3093985443 803802.4767364128 1.1448134751884769 1.0153896865185839 0.9918651703572687 0.8709692021941325 0.8738951336607012 0.9848177613020732 0.9490482529270389 1.0762942621161442 0.9909478167230696 1.0 19.616481497180366 1.7550517626169209 24.999999999906223 1.0290686796343356 0.970358865176705 0.06852302044307146 0.07569670530297769 14.904513721853323 22620.722686772402 0.03731650532225494 0.020694151098411342 56.89207352309613 -1.7550517626169209 -0.05870981445763057 S(ph)TELVLSPDMPR ddPTM_BT-474_Trastuzumab_2h_R1 5 STELVLSPDMPR 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 S(0.99)T(0.01)ELVLSPDMPR;S(0.993)T(0.007)ELVLSPDMPR;S(0.992)T(0.008)ELVLSPDMPR;S(0.991)T(0.009)ELVLSPDMPR;S(0.993)T(0.007)ELVLSPDMPR 324.96 2.7698e-47 2461960000.0 1384670.0 1377350.0 1220441.0 1222645.0 1216030.0 1366800.0 1346690.0 1213593.0 1735900.0 1447180.0 True False 1377215.090571298 1423194.2621243438 1392268.4845366618 1377431.7316393855 1370884.2125255014 1272316.3331011222 1281545.4598446137 1304157.4721603885 1308110.7048682773 1354819.7334068671 1.0165301380044967 1.0504676209177586 1.0276411320313625 1.01669004198489 1.0118572816165277 0.9391037801772494 0.9459158500902581 0.9626059024700785 0.965523805575865 1.0 20.369669474762308 2.8935715676729075 4.083031272636825 0.9593369817446672 1.028177790396708 0.7572472593330363 0.017640061594935738 0.10496902094091583 3.032922858417877 0.0054233055087815835 0.005847016905672756 782.6571690292076 -2.8935715676729075 0.06884080865204079 S(ph)TENVNKLPELSSFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 STENVNKLPELSSFGK 16 1 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 S(0.973)T(0.027)ENVNKLPELSSFGK 183.09 1.2348e-09 205700000.0 357190.0 243870.0 217940.0 204550.0 216230.0 339830.0 280470.0 298390.0 413630.0 283380.0 True False 355266.9287275395 251987.06552747163 248624.05763156107 230446.0090270159 243765.6088043789 316338.35197377385 266902.594600553 320657.3769937183 311696.4288580364 265294.44578617625 1.3391419774158402 0.9498392051922935 0.9371626944348044 0.8686424185930839 0.9188492736137065 1.1924047299080596 1.0060617507826488 1.208684848427486 1.17490748038223 1.0 18.01723494600561 2.7375664112030713 24.99991140061737 1.1264989543511945 0.9886972791840808 0.1394236472630871 0.1379194538372699 156.81236196489283 3943092.7192961867 0.0435160200139677 0.0432750721050357 546.4701083063077 -2.7375664112030713 -0.13780167516711372 S(ph)TENVNKLPELSSFGKPSSSVQGTGLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 STENVNKLPELSSFGKPSSSVQGTGLIR 28 2 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 S(0.976)T(0.024)ENVNKLPELSSFGKPSSSVQGTGLIR;S(0.995)T(0.005)ENVNKLPELSSFGKPSSSVQGTGLIR 251.08 6.8831e-47 6075800000.0 3897000.0 2813800.0 3290500.0 2533300.0 2634500.0 4004900.0 3789000.0 3510600.0 5762800.0 4089200.0 True False 3876018.984997401 2907455.632021981 3753773.7984612784 2854015.5202548974 2969987.959095117 3728050.689520544 3605711.59461438 3772578.798465592 4342635.157563745 3828223.7550597456 1.012484962477568 0.7594790216165421 0.9805523497679395 0.745519515802272 0.7758135754655662 0.9738330170991695 0.9418758738563094 0.9854645495784806 1.1343733897017132 1.0 21.868243725397054 1.9933194839449109 1.2996376982780733 1.053179209625983 0.856743345130871 0.4014289883072525 0.09413468193922311 0.42967362167459316 1.346892048918375 0.06560336433943662 0.03051528599448843 98.47352489977983 -1.9933194839449109 -0.19643586449511208 S(ph)TNTAVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 STNTAVSR 8 0 Q9NWB6;Q9NWB6-2 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 1 S(0.98)T(0.019)NTAVSR 101.71 0.005455300000000001 555280000.0 279120.0 263520.0 213560.0 270930.0 282910.0 209300.0 236350.0 206810.0 247780.0 221540.0 True False 277617.2489331471 272291.10389879596 243627.39170320384 305229.7102209214 318936.9115610549 194831.58363920462 224916.84755532062 222243.21235990126 186717.93908189528 207401.12753006353 1.3385522645864378 1.3128718591914423 1.1746676337036268 1.471687805442028 1.5377780986982523 0.939395006958017 1.0844533500557663 1.071562218617574 0.9002744647799943 1.0 17.662064211777967 2.727938607661273 24.998948303285296 1.0162578059239749 1.3592166849676857 0.7563076542734383 0.10416369059540909 395.4606641002111 930716.85709377 0.03561773282777046 0.033899851609662 534.4887981405082 -2.727938607661273 0.3429588790437108 S(ph)TPDSTYSESFK ddPTM_BT-474_Trastuzumab_2h_R1 1 STPDSTYSESFK 12 0 Q6ISB3;Q6ISB3-2 Q6ISB3 GRHL2 Grainyhead-like protein 2 homolog 1 S(0.683)T(0.317)PDSTYSESFK 201.66 1.5292e-07 599090000.0 1063200.0 990600.0 938070.0 851790.0 889470.0 1261500.0 1205800.0 1050900.0 1581500.0 1283600.0 True False 1057475.8493326248 1023571.5221696551 1070142.102149393 959626.5266640045 1002738.7321982671 1174295.474251584 1147470.8473966792 1129323.4943620714 1191760.5160142744 1201679.5490547512 0.8799982076456591 0.8517840908375307 0.8905386656460731 0.7985710728112606 0.834447696964659 0.9772118325349651 0.9548892200914022 0.9397875625414484 0.9917456920621815 1.0 20.196620794303055 2.7373870515804697 24.99813097820888 0.9651503175169703 0.8503840548517595 0.8165922799267678 0.02871543018281329 46.6896025127793 994527.2320085987 0.00928952052149093 0.009220898178177811 546.2444677797075 -2.7373870515804697 -0.11476626266521084 S(ph)TPPPNNLVNPVQELETER ddPTM_BT-474_Trastuzumab_2h_R1 1 STPPPNNLVNPVQELETER 19 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 S(0.5)T(0.5)PPPNNLVNPVQELETER 81.632 0.0058763 35293000.0 13816.0 12823.0 10516.0 11650.0 12798.0 13067.0 13993.0 11678.0 15814.0 16532.0 True False 13741.616191101904 13249.805803332807 11996.561393289425 13124.88880549859 14427.749440310994 12163.709046409385 13316.10513154897 12549.471659682444 11916.851596743443 15476.913606242717 0.8878783290202725 0.8561012964489515 0.7751262104642447 0.8480301137175423 0.9322110213557996 0.785926015733723 0.8603850528814627 0.8108510507302005 0.7699759719493879 1.0 13.917830178621063 4.626631517635831 4.493549854259488 0.8397960242047483 0.8868962454617347 0.017517408884141328 0.06897251405058134 0.7255057936894096 21.749185270991163 0.015346749779924455 0.07456476372985918 42328.36735363792 -4.626631517635831 0.04710022125698643 S(ph)TPVRDR ddPTM_BT-474_Trastuzumab_2h_R1 2 STPVRDR 7 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 S(0.5)T(0.5)PVRDR;S(0.5)T(0.5)PVRDR 76.827 0.024045 122282000.0 228902.0 262510.0 254120.0 261010.0 263160.0 196596.0 265850.0 248320.0 315020.0 265940.0 True False 227669.61706540303 271247.48665935424 289897.88714936364 294053.83923804155 296671.8661284764 183005.78125720503 252989.81985437704 266850.89934341 237387.542051734 248967.48151731116 0.914455235992628 1.0894896193119659 1.164400609198461 1.1810933598474604 1.191608897356534 0.7350589729304882 1.0161560791495825 1.0718303359021422 0.9534881447367978 1.0 17.92559779376875 S(ph)TS(ph)PAGQHHS(ph)PISSR ddPTM_BT-474_Trastuzumab_2h_R1 3 STSPAGQHHSPISSR 15 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 S(0.992)T(0.199)S(0.81)PAGQHHS(0.985)PIS(0.011)S(0.004)R;S(0.994)T(0.099)S(0.906)PAGQHHS(0.637)PIS(0.313)S(0.051)R;S(0.997)T(0.058)S(0.946)PAGQHHS(0.969)PIS(0.03)S(0.001)R 140.48 2.3266e-06 1364320000.0 609400.0 821410.0 582320.0 834260.0 791750.0 814970.0 842980.0 572300.0 825360.0 772010.0 True False 606119.0581107044 848750.1352971701 664305.5943838252 939877.2304613945 892574.6694300846 758633.042133026 802201.8369036765 615007.9320805155 621961.0872573771 722739.6608489859 0.8386409255563892 1.1743511270713476 0.9191492184107906 1.300436770492631 1.2349878078941972 1.0496629467405691 1.1099457804229924 0.8509397856457465 0.860560338596575 1.0 19.463116539815253 1.7523581048815347 8.645020813828133 0.8939645691327016 1.0985415236797689 0.28240391020576316 0.1347944719776598 0.14829970761938563 42.50803993888859 0.06323819950682426 0.034201430007744865 56.54029952834545 -1.7523581048815347 0.20457695454706726 S(ph)TSATDTHHVEMAR ddPTM_BT-474_Trastuzumab_2h_R1 3 STSATDTHHVEMAR 14 0 H3BTL2;H3BS02;O14874-2;O14874-3;O14874;H3BQP2;H3BNP3 H3BTL2 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial 1 S(0.961)T(0.031)S(0.008)ATDTHHVEMAR;S(0.456)T(0.456)S(0.089)ATDTHHVEMAR;S(0.901)T(0.086)S(0.009)AT(0.004)DTHHVEMAR 188.62 5.233e-07 2564120000.0 527855.0 596327.0 576562.0 532089.0 687052.0 1110570.0 584785.0 348689.0 768308.0 576068.0 True False 525013.0873302036 616175.3837077167 657736.9180332574 599451.4128436856 774543.9997237492 1033798.9099005802 556496.7154543612 374709.94378686487 578968.7881997444 539302.8470433725 0.9735032741037624 1.142540572677826 1.2196058701324826 1.1115302211550828 1.4361949023077527 1.916917211856363 1.0318816570415879 0.6948043123472135 1.0735504019195024 1.0 19.04073612446276 2.0103366793366164 24.95938929423364 0.8824913348187401 1.3024811033801758 0.31168907294780124 0.25653212519492213 231.7648793257289 559626.9288516345 0.10187477188847331 0.07516201153408168 102.40865901663147 -2.0103366793366164 0.41998976856143566 S(ph)TSGSPRPAGAKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 STSGSPRPAGAKPK 14 2 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 S(0.276)T(0.276)S(0.239)GS(0.208)PRPAGAKPK 51.88800000000001 0.083977 144150000.0 348250.0 268700.0 267470.0 239790.0 244820.0 356250.0 326630.0 326420.0 515160.0 382620.0 True False 346375.06069421244 277643.51706742 305127.4511090835 270147.3894137776 275996.3758381726 331623.2760222957 310829.6590522288 350779.11792717414 388205.72079033416 358200.8640225372 0.9669855533135154 0.7751056598510921 0.851833375504883 0.7541784974499128 0.7705072867183468 0.9258025575321636 0.8677523989240631 0.9792804908061414 1.0837654505654937 1.0 18.450409291714696 1.775533112234213 1.4215096256736517 1.0449821932834125 0.8269621831399518 0.6063275550761547 0.06644198625246402 0.25495320862952253 0.9798183670886509 0.05064938687634002 0.02022386228386482 59.639378939188376 -1.775533112234213 -0.21802001014346062 S(ph)TSQSIVSLLTGTAGEDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 STSQSIVSLLTGTAGEDEK 19 0 V9GZ20;V9GXZ5;Q70EL4-2;Q70EL4-3;Q70EL4-4;Q70EL4 V9GZ20 USP43 Ubiquitin carboxyl-terminal hydrolase 43 1 S(0.333)T(0.333)S(0.333)QS(0.001)IVSLLTGTAGEDEK 118.46 8.277700000000001e-05 23458000.0 95401.0 52188.0 46770.0 57163.0 53659.0 71718.0 68214.0 73523.0 102500.0 72803.0 True False 94887.37161604759 53925.04603168783 53354.80946787241 64399.829938945535 60492.15558818936 66760.30346601272 64914.228217214484 79009.65960222912 77240.24842963212 68156.65021021587 1.3921953517871848 0.7911927283011498 0.7828261703488937 0.9448796227560604 0.8875459020009511 0.9795126852640733 0.9524269167718664 1.1592362499996591 1.1332753031641032 1.0 16.05656681071373 1.7616290762319275 13.607764531647963 1.10952506409509 0.9452879270721317 0.1194732363198121 0.16415050675675588 0.7018672660629197 414.9165090502016 0.07408372357756854 0.04089136494156173 57.7602515876246 -1.7616290762319275 -0.16423713702295828 S(ph)TSQSSESSVK ddPTM_BT-474_Trastuzumab_2h_R1 3 STSQSSESSVK 11 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 1 S(0.167)T(0.167)S(0.167)QS(0.167)S(0.167)ES(0.167)SVK;S(0.167)T(0.167)S(0.167)QS(0.167)S(0.167)ES(0.167)SVK;S(0.167)T(0.167)S(0.167)QS(0.167)S(0.167)ES(0.167)S(0.001)VK 74.53 0.042558 1929690000.0 832800.0 3340940.0 3200380.0 4293780.0 3654550.0 1883460.0 2114530.0 1512750.0 446574.0 1978110.0 True False 828316.2973327774 3452141.1682591243 3650965.6857983633 4837372.107748822 4119935.2802850856 1753260.8433879397 2012242.1056109676 1625639.0865888533 336521.8214850199 1851865.3262548265 0.4472875460160739 1.8641426670267982 1.9715071252951204 2.612161931630213 2.2247488636860844 0.9467539666794764 1.0866028307147386 0.8778387194475483 0.1817204613715591 1.0 20.82054775420259 2.6540478610152314 5.84706620570441 0.8278313770725046 1.876262045433295 0.4375329154117362 0.5690841308186604 0.22681881510821691 12.434239510239903 0.1931928919208677 0.18206203077597027 450.8663891103802 -2.6540478610152314 1.0484306683607905 S(ph)TSTPNVHMVSTTLPVDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 S(0.329)T(0.329)S(0.329)T(0.012)PNVHMVSTTLPVDSR;S(0.369)T(0.369)S(0.259)T(0.002)PNVHMVSTTLPVDSR;S(0.362)T(0.362)S(0.275)T(0.001)PNVHMVSTTLPVDSR;S(0.364)T(0.364)S(0.27)T(0.001)PNVHMVSTTLPVDSR 235.76 2.3167e-24 1739740000.0 659742.0 602534.0 559256.0 666411.0 628855.0 650746.0 662429.0 573235.0 761427.0 713885.0 True False 656190.0223762274 622588.9799505054 637994.3836597063 750778.56427134 708935.9567343924 605761.4607113132 630384.7785454773 616012.706528349 573783.518449068 668324.2481123017 0.9818438044551763 0.9315672470496519 0.9546180397639876 1.1233747187715133 1.0607664748612662 0.9063885717483712 0.943231942168812 0.9217273026802365 0.8585406261552437 1.0 19.35018869337436 2.7232965384473915 24.586940632912565 0.9227128561666643 1.0092261602808081 0.32910058920157403 0.06019045817453526 826.9093165975618 1331959.6851188259 0.020841151173734824 0.019716587765661334 528.806200054414 -2.7232965384473915 0.08651330411414382 S(ph)TSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 STSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 41 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.167)T(0.167)S(0.167)T(0.167)S(0.167)S(0.167)PVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 197.72 2.1679999999999996e-35 164420000.0 225760.0 232200.0 219790.0 202580.0 201280.0 276890.0 283670.0 233240.0 296230.0 280280.0 True False 224544.53324429423 239928.63663213563 250734.52155107303 228226.60722900456 226911.81491997128 257749.24602895023 269947.7983753659 250645.5531687218 223228.08577863337 262392.29044021945 0.8557588825021213 0.914389047900774 0.9555712217398308 0.8697915889453359 0.8647808003020132 0.9823049510963927 1.028794702475711 0.9552321554425628 0.8507417859119271 1.0 18.001365806027483 2.7314059070181664 24.93300994286662 0.9656940699240232 0.89559035976783 0.3278993677484172 0.05090229446386449 695.8334920829503 2424861.1561397905 0.016912121887087926 0.016247889957606277 538.7731037105218 -2.7314059070181664 -0.07010371015619321 S(ph)TTELDDYSTNK ddPTM_BT-474_Trastuzumab_2h_R1 4 STTELDDYSTNK 12 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 S(0.989)T(0.009)T(0.002)ELDDYSTNK;S(0.888)T(0.11)T(0.002)ELDDYSTNK;S(0.933)T(0.059)T(0.008)ELDDYSTNK;S(0.992)T(0.008)TELDDYSTNK 285.5 2.1622999999999997e-28 1200550000.0 3415610.0 2142410.0 1938760.0 1978270.0 1644510.0 2756560.0 2397640.0 2335280.0 3433990.0 2617910.0 True False 3397220.7352699493 2213718.821735808 2211720.555995987 2228718.77916341 1853928.6007255702 2566005.495444266 2281656.9933257406 2509550.4519115626 2587729.177608509 2450832.7424944886 1.3861495631122567 0.9032516921096203 0.9024363505707328 0.9093720434365471 0.7564484383534954 1.046993314130671 0.9309721360273003 1.0239582687137232 1.0558571104181862 1.0 21.224840599915137 4.7419468097185 24.904825422731143 0.9458668216819276 1.3861497369620008 0.7046994508570477 0.08514012875447675 174.4354864455496 1282880.0246667576 0.020951683466670777 0.1519629338205353 55200.982765442684 -4.7419468097185 0.44028291528007324 S(ph)TTPANLDSESEHFFR ddPTM_BT-474_Trastuzumab_2h_R1 1 STTPANLDSESEHFFR 16 0 Q13315 Q13315 ATM Serine-protein kinase ATM 1 S(0.363)T(0.363)T(0.275)PANLDSESEHFFR 123.02 5.8066e-05 85053000.0 21432.0 29485.0 27640.0 32849.0 25123.0 30577.0 20341.0 28033.0 32906.0 23116.0 True False 21316.612493319048 30466.39040094113 31531.471748813194 37007.68003191616 28322.265134312624 28463.283960515793 19357.02811983403 30124.96480868968 24796.75721780951 21640.717089396734 0.9850233892555951 1.4078272117825845 1.4570437577719 1.7100949048517784 1.3087489207180494 1.3152652864013412 0.8944725833192636 1.392050211841176 1.1458380568155542 1.0 14.401460684822126 2.4635603396514543 24.88735793601425 1.1521363538524088 1.39025976650835 0.2620019374717131 0.20616939355357786 338.9189581700148 621988.9678212292 0.07244781002646127 0.06064434470164484 290.77719290179675 -2.4635603396514543 0.23812341265594128 S(ph)TTPAPK ddPTM_BT-474_Trastuzumab_2h_R1 6 STTPAPK 7 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.996)T(0.004)TPAPK;S(0.723)T(0.139)T(0.139)PAPK;S(0.85)T(0.135)T(0.015)PAPK;S(0.979)T(0.019)T(0.002)PAPK;S(0.976)T(0.022)T(0.002)PAPK;S(0.886)T(0.086)T(0.028)PAPK 103.8 0.0087008 7121630000.0 6235020.0 8170920.0 7427360.0 5956840.0 7185160.0 5921570.0 9162880.0 8201710.0 10665100.0 8596220.0 True False 6201451.345095852 8442884.13277455 8473067.728229567 6710975.33323144 8100147.536220096 5512225.803776412 8719636.48879921 8813763.247639498 8036829.010018237 8047601.8800057825 0.7705961897175009 1.0491180178471358 1.052868650135496 0.8339099564436477 1.0065293558252257 0.6849525965581751 1.0835074372233913 1.095203686645737 0.9986613564949938 1.0 22.940127505189754 S(ph)TTPPPAEPVSLPQEPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 S(0.465)T(0.465)T(0.07)PPPAEPVSLPQEPPK 201.57 1.456e-15 601780000.0 234530.0 196220.0 179750.0 167500.0 173150.0 234070.0 253920.0 238170.0 352590.0 244750.0 True False 233267.31653873276 202751.06408250533 205057.2375849917 188705.48282583794 195199.62615954428 217889.29184151278 241636.91953140244 255943.45480275463 265698.9189639415 229129.84545898283 1.0180573206055368 0.8848740925756019 0.8949390123064503 0.8235744341721674 0.8519170681083862 0.9509424291935715 1.0545850936501353 1.117023643471936 1.15959978252377 1.0 17.805805864512305 2.260898517214343 2.5294369570373805 1.102184150277889 0.890660265011107 0.6829852400053439 0.060706067500972544 0.15021439962235755 1.9721629040584976 0.025858179588202548 0.01856189204527099 182.3469557387336 -2.260898517214343 -0.21152388526678212 S(ph)TTPPPAEPVSLPQEPPKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 S(0.595)T(0.34)T(0.065)PPPAEPVSLPQEPPKPR;S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPKPR;S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPKPR;S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPKPR 197.4 1.0041000000000002e-21 2689445000.0 1517456.0 1491093.0 1269782.0 1291510.0 1445814.0 1773329.0 1538303.0 1583107.0 2110992.0 1642781.0 True False 1509286.1855012097 1540723.1291202456 1448556.268457001 1455015.033578497 1629929.8428890277 1650742.9401974522 1463889.407001872 1701246.4831944604 1590766.307443572 1537937.3101244264 0.9813704209953144 1.0018113995788254 0.9418825194765618 0.9460821478222537 1.059815528343713 1.0733486529850162 0.9518524567710998 1.1061871455975156 1.034350553154128 1.0 20.552565266241665 3.2360642240616784 24.999710119073644 1.042875377870876 0.9683666661908907 0.39161789183759677 0.04231521696150775 63.47891162318141 635698.6563032285 0.011941513072123672 0.014914751045536752 1722.1232260933384 -3.2360642240616784 -0.07450871167998518 S(ph)VASNQS(ph)EMEFSSLQDMPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVASNQSEMEFSSLQDMPK 19 0 Q8N163-2;Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 2 S(0.913)VAS(0.512)NQS(0.574)EMEFSSLQDMPK 101.47 0.00024871 47428000.0 132380.0 107770.0 93737.0 97306.0 97148.0 141230.0 121030.0 125240.0 181110.0 131070.0 True False 131667.2807888006 111357.05930165926 106934.35482339017 109624.92962299117 109519.22195869121 131467.10251965994 115175.31652050118 134586.04475583415 136477.8672496652 122705.00038532753 1.073039243513541 0.9075185114866338 0.8714751190871343 0.8934023004664738 0.8925408224177553 1.0714078652607228 0.9386358841026766 1.096826081522325 1.1122437294412377 1.0 16.90483451629926 2.3537746533181263 1.3411605053250664 1.0659636636296972 0.9243349558865409 0.34710605114950377 0.0732195834245431 0.4458132862764636 1.598510049426638 0.04125037826021126 0.026823836809175088 225.8263698499417 -2.3537746533181263 -0.14162870774315628 S(ph)VASSQPAKPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVASSQPAKPTK 12 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.998)VAS(0.001)S(0.001)QPAKPTK;S(0.998)VAS(0.002)SQPAKPTK 174.59 1.815e-05 1170230000.0 1348380.0 588370.0 588250.0 650360.0 512670.0 863180.0 678820.0 860850.0 1703990.0 1036610.0 True False 1341120.4718991006 607953.5397728246 671070.4868393398 732695.509317087 577955.485666841 803510.39830716 645982.8832557766 925090.9983077267 1284064.496796183 970452.6623135299 1.3819535191978451 0.6264638795708816 0.6915025460794018 0.7550038634242736 0.5955524757786872 0.8279748508202507 0.665651101121999 0.9532572110239129 1.3231603628506845 1.0 19.88829831590626 1.4837405360016924 4.671824638437847 1.1607592462571827 0.775675882067266 0.3011299628284194 0.22323623566633585 0.19140057186447926 8.904040671853439 0.13451381298636278 0.054410039342692604 30.46074605377733 -1.4837405360016924 -0.38508336418991673 S(ph)VDALDDLTPPSTAESGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVDALDDLTPPSTAESGSR 19 0 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 S(1)VDALDDLTPPSTAESGSR;S(1)VDALDDLTPPSTAESGSR 272.31 2.5087e-39 719040000.0 372050.0 337360.0 339800.0 324500.0 358310.0 372270.0 315690.0 326790.0 429900.0 359520.0 True False 370046.92413864075 348588.8236615731 387640.88640545367 365581.66672826506 403938.6546302411 346535.85112932004 300418.8686470875 351176.7292059967 323956.9053648668 336575.125799442 1.0994482235123457 1.0356939563896645 1.1517217307271859 1.0861814754133299 1.200144109493521 1.0295943596729529 0.8925759677977532 1.0433828951912967 0.9625099436430303 1.0 18.36056903431379 2.4857165999604565 24.64278545818086 0.9795201163556433 1.111145214011573 0.6073616895637379 0.053260368298527476 234.13661050571295 671270.837562504 0.017388324591167067 0.015236606373361631 305.9965992953663 -2.4857165999604565 0.13162509765592967 S(ph)VDEVFDEVVQIFDK ddPTM_BT-474_Trastuzumab_2h_R1 3 SVDEVFDEVVQIFDK 15 0 P30085;P30085-3;A0A494BXC7;P30085-2 P30085 CMPK1 UMP-CMP kinase 1 S(1)VDEVFDEVVQIFDK;S(1)VDEVFDEVVQIFDK;S(1)VDEVFDEVVQIFDK 292.44 6.271499999999998e-44 1561830000.0 1071151.0 795717.0 689420.0 634730.0 506049.0 738730.0 792996.0 814636.0 873622.0 899216.0 True False 1065384.0420320628 822201.9593239152 786484.3434539359 715086.7529196662 570491.3405625824 687663.3338833707 754635.7539411004 875428.2749577892 658329.564035045 841827.265022451 1.265561340548467 0.9766872534141402 0.9342585778959782 0.8494459405524187 0.6776821852489746 0.8168698763457503 0.8964258884166394 1.0399143759431955 0.7820245214052169 1.0 19.683164710744055 4.861478531054445 1.576775452820377 0.873310999143575 1.501946022291318 0.5919545877679777 0.09841889078613301 1.1146404887480186 2.0824281365508726 0.028602362571598722 1.1778924599441793 72690.64643779748 -4.861478531054445 0.6286350231477429 S(ph)VDFDSLTVR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVDFDSLTVR 10 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR 224.66 4.053199999999999e-09 908416000.0 1954750.0 574681.0 429407.0 1086130.0 226353.0 512945.0 379693.0 606307.0 1825990.0 879328.0 True False 1944225.8431931431 593808.909683 489863.77312744746 1223633.9466365834 255177.7128506572 477486.31949265033 361325.79902188445 651552.7071045627 1375999.2315124278 823208.534209424 2.3617658981879948 0.7213347347683535 0.5950664415765474 1.4864203853422289 0.3099794307838651 0.5800308180128486 0.4389237769125985 0.7914795340773372 1.6715074909104064 1.0 19.650898413177188 4.740473979744464 24.627285253247244 0.8056708407093716 2.361766554356945 0.5430735376066683 0.41637146188103097 101.39580585570558 1304962.9993037542 0.09714905802053819 0.6303636046075747 55014.09584590365 -4.740473979744464 1.5560957136475735 S(ph)VDIHDSIQPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVDIHDSIQPR 11 0 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 S(1)VDIHDSIQPR;S(1)VDIHDSIQPR;S(1)VDIHDSIQPR;S(1)VDIHDSIQPR;S(1)VDIHDSIQPR 185.95 2.7336e-06 5159800000.0 1808540.0 2905610.0 3309040.0 3508280.0 3573950.0 3857510.0 3411850.0 3272580.0 3376470.0 3299560.0 True False 1798803.021587682 3002321.4723716658 3774924.069308712 3952427.88828795 4029071.3480387097 3590849.4133018004 3246805.7809672956 3516796.5374245197 2544384.2108799987 3088979.2559045586 0.5823292656139677 0.9719461426077086 1.2220619682352918 1.279525552246075 1.3043374572157365 1.162471197059003 1.0510934234216862 1.138497945786522 0.8236974094327209 1.0 21.558698751877905 4.6644499895062195 2.855952219939499 1.1363710454476217 0.5285335732077677 0.590485788556413 0.13512280783197195 0.23242355298551434 2.884554685863584 0.03421392120930487 0.29864596188708376 46179.581146748875 -4.6644499895062195 -0.607837472239854 S(ph)VDRLDETNLAPVLQSPDGNWVALK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVDRLDETNLAPVLQSPDGNWVALK 25 1 Q8NFW9-5;Q8NFW9-2;Q8NFW9;Q8NFW9-4;Q8NFW9-3;Q8NFW9-6 Q8NFW9-5 MYRIP Rab effector MyRIP 1 S(1)VDRLDETNLAPVLQSPDGNWVALK;S(0.999)VDRLDET(0.001)NLAPVLQSPDGNWVALK 327.98 5.433399999999997e-88 302300000.0 319970.0 218350.0 186592.0 200001.0 148540.0 244760.0 212965.0 229770.0 322100.0 256950.0 True False 318247.31707200926 225617.64775463784 212862.53171326173 225321.10609343546 167455.6885344426 227840.31730306585 202663.0693446955 246916.60414841882 242722.7709188733 240551.23101403756 1.322991845564231 0.9379193230629186 0.8848947927472463 0.9366865642033928 0.696133159778636 0.9471592240148213 0.8424944178850157 1.026461611140164 1.009027348958813 1.0 17.875984656826404 4.737791058550826 4.838371908449763 0.9143709606473179 1.3449670712790598 0.6350633080024216 0.09170636614186162 0.11146333241831881 7.659203353420512 0.02241002989379127 0.16170138791810418 54675.285382081915 -4.737791058550826 0.43059611063174186 S(ph)VEDDAEGHLIYHVGDWLQER ddPTM_BT-474_Trastuzumab_2h_R1 6 SVEDDAEGHLIYHVGDWLQER 21 0 B1AVT0;P49760-3;P49760 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER 310.14 2.7630999999999993e-66 402376000.0 139696.5 124503.5 110975.1 122789.8 122574.7 131787.3 116210.3 69895.29999999999 154417.0 125912.5 True False 138944.3895657404 128647.5237335448 126599.42946713902 138334.97609007815 138183.86148783308 122677.15414493503 110588.76382254304 75111.24220714184 116362.9994317903 117876.65645088519 1.1787269316010278 1.0913740481530152 1.0739991553788963 1.1735570065793068 1.1722750343314086 1.040724752793188 0.9381735718693486 0.6372020081723127 0.9871589756218987 1.0 16.846918518819148 2.2363148117557845 2.8267713290451097 0.8279401424815046 1.1303136416179551 0.5406470057361412 0.10373014945854743 0.16375658565532267 2.695462744198398 0.04232993078569574 0.030581114614716673 172.31171770416984 -2.2363148117557845 0.3023734991364505 S(ph)VEDDEEGHLICQSGDVLSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVEDDEEGHLICQSGDVLSAR 21 0 F8WBF5;P49759;P49759-3 F8WBF5 CLK1 Dual specificity protein kinase CLK1 1 S(1)VEDDEEGHLICQSGDVLSAR 216.67 3.9277e-25 100250000.0 47951.0 47187.0 43033.0 46416.0 50811.0 48783.0 43005.0 52166.0 64996.0 46435.0 True False 47692.83714385693 48757.59076985616 49091.67235045868 52292.260840860305 57281.47966960787 45410.746032829935 40924.6838549463 56058.89181358059 48978.60670177924 43471.47854499642 1.0971063957369445 1.1215995499069165 1.1292846250822803 1.2029096453835515 1.317679581804815 1.04461011110598 0.9414145831866753 1.2895556739703529 1.1266837094368094 1.0 15.407781544713608 0.9665345900154576 23.505166523947914 0.9999999959393738 1.1473899552110272 0.14215126334880346 0.10430868568143452 4567.985717832876 3208430.8724167575 0.10215876245724134 0.0255396906812259 9.2583712182805 -0.9665345900154576 0.14738995927165333 S(ph)VEDDKEGHLVCR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVEDDKEGHLVCR 13 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BQG1 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 S(1)VEDDKEGHLVCR;S(1)VEDDKEGHLVCR;S(1)VEDDKEGHLVCR 158.98 2.7993e-05 1329270000.0 1218040.0 892680.0 808340.0 695310.0 736230.0 1048640.0 995730.0 1032080.0 1485320.0 1058680.0 True False 1211482.2079769655 922392.3141635447 922147.245782767 783336.1747082602 829984.5265229058 976149.9850330403 947562.7358420118 1109099.0503960487 1119282.7882683054 991114.1360184522 1.2223437886213444 0.9306620505575878 0.930414785008776 0.7903591990475619 0.8374257780815805 0.9849016874630336 0.9560581384184499 1.1190427117219524 1.1293177522063582 1.0 19.918691681178725 1.8015439664554849 5.0759535814278 1.0930518631438668 0.9383591723303669 0.22072461646876007 0.11219457612115341 0.2859712185158325 13.16540691253823 0.05522207875925042 0.03085499524488148 63.32044618727878 -1.8015439664554849 -0.1546926908134999 S(ph)VEDVRPHHTDANNQSACFEAPDQK ddPTM_BT-474_Trastuzumab_2h_R1 5 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.966)VEDVRPHHT(0.017)DANNQS(0.017)ACFEAPDQK;S(0.891)VEDVRPHHT(0.109)DANNQSACFEAPDQK;S(0.799)VEDVRPHHT(0.198)DANNQS(0.003)ACFEAPDQK;S(0.848)VEDVRPHHT(0.152)DANNQSACFEAPDQK;S(0.969)VEDVRPHHT(0.031)DANNQSACFEAPDQK 186.17 9.5931e-18 6690740000.0 4134750.0 3430030.0 3507620.0 3508720.0 3354410.0 4493290.0 4407410.0 1720520.0 6030830.0 3808580.0 True False 4112488.965413911 3544196.475053083 4001462.40722041 3952923.592242831 3781574.2303542458 4182679.4383669416 4194206.7403587704 1848913.9390235345 4544612.755481735 3565513.1637106175 1.153407315185469 0.9940214247770859 1.122268302904287 1.1086548866163872 1.060597467103101 1.1730932537110708 1.1763262531315053 0.5185547925727965 1.2746027140598668 1.0 21.76567829969925 S(ph)VELCCASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVELCCASR 9 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(1)VELCCASR 80.834 0.024116 308010000.0 88406.0 153330.0 125890.0 204260.0 178800.0 124620.0 152630.0 111430.0 77181.0 129510.0 True False 87930.03191883005 158433.49636005767 143614.21774450413 230119.29505675053 201569.1201693707 116005.31272392574 145246.70379677837 119745.47243007502 58160.776722414026 121244.5609209107 0.7252286721231798 1.3067266288621868 1.1845002914249112 1.89797623339871 1.6625003104333618 0.956787767160932 1.1979646979094143 0.9876358289440006 0.47969802752927615 1.0 16.887560503316497 1.8131546939715044 1.4564335064639853 0.7592565130501566 1.3381991405778502 0.2956616238000015 0.33201678845932386 0.49909712613965634 2.003567157954636 0.26136402981975015 0.10757459619471721 65.03613052072707 -1.8131546939715044 0.5789426275276935 S(ph)VENLFLSLATHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVENLFLSLATHVK 14 0 Q4VX76 Q4VX76 SYTL3 Synaptotagmin-like protein 3 1 S(1)VENLFLSLATHVK;S(0.985)VENLFLS(0.014)LAT(0.002)HVK 111.33 0.00075999 0.0 144459.0 141304.0 140491.0 131751.0 134139.0 192112.0 162591.0 149471.0 211920.0 169926.0 True False 143681.2487949038 146007.21821992818 160270.91163033692 148430.66309126548 151220.80654585676 178831.74962300458 154725.85217206314 160625.28501835876 159695.15558251366 159081.1771990323 0.9031945282573495 0.9178158019113297 1.0074787882026803 0.9330498158531881 0.950588933325901 1.1241540499745084 0.972621996494783 1.0097064143383512 1.003859528790846 1.0 17.27940361766015 2.960862917094549 24.990625742955313 1.0194484097847512 0.9433468236547331 0.43811442219229946 0.04511665052057804 527.8854936931397 337076.4750126943 0.013611050833362812 0.01443918906761179 913.8247516788225 -2.960862917094549 -0.07610158613001805 S(ph)VENLPECGITHEQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVENLPECGITHEQR 15 0 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;F8W860;Q9UBF8-3 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR 214.42 1.5955e-12 4819310000.0 1974670.0 1821750.0 1680510.0 1860080.0 1755430.0 2060700.0 1900490.0 1750710.0 2256990.0 2058810.0 True False 1964038.5961264614 1882385.8474788687 1917111.2007452254 2095565.9372817008 1978973.605251222 1918248.659366024 1808556.0381231697 1881356.8701252474 1700785.0566165394 1927414.9831640783 1.0190014155136748 0.9766375502532988 0.9946540923937729 1.0872416970846532 1.0267501407519952 0.9952442396276245 0.9383324576808115 0.976103686315014 0.8824176793647732 1.0 20.87823579466676 2.408197561608764 3.7361951772180255 0.9500892268150964 1.0201577820483632 0.43081625553195524 0.038771755111966275 0.2297438071689834 6.46176766147372 0.014245245153817828 0.011842654891131892 255.97500585774966 -2.408197561608764 0.07006855523326672 S(ph)VHS(ph)EHS(ph)AR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVHSEHSAR 9 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 3 S(1)VHS(1)EHS(1)AR 58.508 0.051131 63114000.0 91896.0 99234.0 51445.0 86048.0 91402.0 69197.0 78817.0 55413.0 95622.0 75233.0 True False 91401.24214660545 102536.94370178023 58688.00883204398 96941.66797729977 103041.50291790167 64413.57426221698 75004.320599821 59548.19944151253 72057.23936915402 70431.56552978823 1.2977312297275052 1.4558379177076985 0.8332628756806855 1.3763951894026747 1.4630017399559496 0.9145554805958982 1.064924796653835 0.8454760162377378 1.0230816087522323 1.0 16.103934530386315 2.7213272978152236 24.83784609281848 0.958621698005561 1.2746768280541036 0.44762388566265043 0.1749060972210661 717.4112648651827 1033981.0247487243 0.05681315315491327 0.05368157440496028 526.4138387620349 -2.7213272978152236 0.3160551300485427 S(ph)VHS(ph)EHSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVHSEHSAR 9 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 S(1)VHS(1)EHSAR;S(1)VHS(1)EHSAR 132.79 0.00015590000000000002 228630000.0 89693.0 118407.0 74833.0 100034.0 103730.0 64882.0 82983.0 50522.0 98372.0 71734.0 True False 89210.1028538292 122348.10541645714 85368.83593990373 112698.29414328291 116939.40064412083 60396.86005579959 78968.79526415555 54292.208185517775 74129.5387172661 67155.87470543275 1.3284035573229205 1.8218526071340035 1.2712042887440433 1.6781598726487272 1.7413130445706295 0.899353337600316 1.1759030108763835 0.8084506146880053 1.1038429481027845 1.0 16.035225989740887 2.7336111992348973 24.96653016899016 0.9859794698847234 1.5718898318797223 0.7044029066359234 0.18475829864132642 210.02545366856165 1059435.882327199 0.055614211096226183 0.053949141102965156 541.515882947123 -2.7336111992348973 0.5859103619949989 S(ph)VHSEHSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVHSEHSAR 9 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 S(1)VHSEHSAR;S(1)VHSEHSAR 130.56 0.0002304 95511000.0 27570.0 50381.0 38317.0 41480.0 47203.0 31255.0 28244.0 26225.7 26613.0 29702.0 True False 27421.56618331496 52057.90112904237 43711.70054266555 46731.36374695977 53214.02225589934 29094.41541635612 26877.72981744224 28182.794905406223 20054.58274592976 27806.392930838454 0.9861604937943351 1.8721558477046472 1.5720018289099067 1.6805978345768366 1.9137333773659928 1.0463210920136714 0.9666025321692736 1.01353652649245 0.7212220152326334 1.0 14.763128988732282 2.6192457205617656 5.758963170781053 0.9462000602854321 1.6203012494862419 0.6357546020357078 0.24874812934008134 0.1435144693803325 6.231673916118803 0.07799311247539345 0.07328228775843322 416.1459961826259 -2.6192457205617656 0.6741011892008097 S(ph)VPISR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVPISR 6 0 A7KAX9;A7KAX9-2 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(1)VPISR 113.5 0.027364 661040000.0 193310.0 207870.0 177750.0 177770.0 153410.0 208930.0 238080.0 181430.0 253980.0 205890.0 True False 192269.2404387601 214788.8272899315 202775.6549693033 200275.6637728315 172945.85416769076 194487.16086831797 226563.16084607856 194969.2278828727 191390.03215763893 192749.9239287027 0.9975061806503209 1.1143393621746949 1.0520141893509076 1.039044061293184 0.8972551098472166 1.0090129059675161 1.175425422890871 1.0115139031390277 0.9929447869895566 1.0 17.556370765198626 1.9912496285104502 0.004105065105379705 3.960654213210698e-06 2.0604251733617875 0.017859603589024386 0.07045969437714253 48109.88930762556 151.239427951123 37795.22355693383 38105.56402140688 98.00531491613609 -1.9912496285104502 2.0604212127075745 S(ph)VPNTPLRPNQQSVVNSSFSELFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVPNTPLRPNQQSVVNSSFSELFVK 25 1 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 1 S(0.849)VPNT(0.151)PLRPNQQSVVNSSFSELFVK;S(0.987)VPNT(0.013)PLRPNQQSVVNSSFSELFVK 187.68 8.050499999999999e-18 1849150000.0 477208.0 247927.0 237360.0 256739.0 207848.0 292058.0 277610.0 301848.0 516984.0 369875.0 True False 474638.76515079313 256179.1003199638 270778.2248298949 289242.13107595715 234316.21078838542 271868.71789058176 264180.94372681435 324373.43051308685 389580.22043068206 346269.2608340808 1.370721628617858 0.7398262834618611 0.7819874746538407 0.8353098694906999 0.6766878764345788 0.7851367379123237 0.7629350150529242 0.9367664624106337 1.1250788461334262 1.0 18.40153479610253 -0.2940391566182927 7.120042928811336 0.9999999999906163 0.8707949306358338 0.017839479267772296 0.20047110320604142 0.0 0.0 0.186288429904859 0.04390860434125148 0.5081136282360117 0.2940391566182927 -0.1292050693547825 S(ph)VPSIAAATGTHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVPSIAAATGTHSR 14 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 S(1)VPSIAAATGTHSR;S(0.997)VPS(0.003)IAAATGTHSR 226.79 1.4621e-12 869340000.0 533010.0 293760.0 339480.0 387070.0 214740.0 303610.0 270040.0 307050.0 448910.0 369660.0 True False 530140.3333829786 303537.6240183302 387275.83318694314 436073.0223128186 242085.86613630116 282622.1553210644 256977.13354702215 329963.6301683072 338282.14558581635 346067.9823181517 1.53189650724638 0.8771040359904722 1.1190744390531562 1.2600790728797393 0.6995326886777513 0.8166665792885762 0.7425625792529245 0.9534647728981781 0.9775020021205615 1.0 18.400695946169723 3.246222769566209 24.999906584471898 0.8583344601461714 1.168617214821975 0.45610396562998134 0.17647913433193085 166.3879144272497 542883.4839796124 0.04783818003219204 0.06357142996426136 1762.8800766088536 -3.246222769566209 0.31028275467580346 S(ph)VQEGENPDDGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVQEGENPDDGVR 13 0 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 S(1)VQEGENPDDGVR;S(1)VQEGENPDDGVR 238.83 9.0802e-17 7202700000.0 2558700.0 2723800.0 2690700.0 2390200.0 2136370.0 2673100.0 2743500.0 2192000.0 2701300.0 2649500.0 True False 2544924.243498298 2814460.0364281265 3069527.172016344 2692799.074927275 2408424.05624294 2488314.88880056 2610786.4238122334 2355578.1707504652 2035600.8105655138 2480406.6416489254 1.0260108970706845 1.1346768667564642 1.2375096568745612 1.0856280698946827 0.9709795223906783 1.0031882865570694 1.0525638739931102 0.9496741909965711 0.8206722141383586 1.0 21.242145226951944 3.333238107281178 3.8780979724445723 0.9698690097414054 1.1367581123626738 0.519368072627518 0.07368753493730225 0.18545777787723156 5.276152130084675 0.02174864099027925 0.029762054030369092 2153.962347351467 -3.333238107281178 0.16688910262126833 S(ph)VS(ph)GS(ph)PEPAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 S(1)VS(1)GS(1)PEPAAK;S(1)VS(1)GS(1)PEPAAK 167.32 1.2962e-05 714910000.0 2640360.0 2685020.0 1521330.0 1874910.0 2073710.0 3219030.0 2596980.0 2632060.0 4055210.0 2537060.0 True False 2626144.5951315714 2774389.2675711317 1735520.0403625919 2112273.413761147 2337784.676657859 2996506.0328815477 2471354.155972989 2828477.6825298667 3055857.832530036 2375142.6587136537 1.1056786780773231 1.1680937384509378 0.7307013892388792 0.8893248605560082 0.9842712681199421 1.2616109697193585 1.0405076709419392 1.1908664400233262 1.2865997001565577 1.0 21.179582738278373 2.8349984532960537 7.198972175976478 1.1595009506364715 0.9664903914609326 0.30005497621065913 0.13743143769797234 0.3385443604673414 22.051968939637565 0.043358399026490274 0.04604392679918525 683.9092115908917 -2.8349984532960537 -0.1930105591755389 S(ph)VS(ph)PCSNVESR ddPTM_BT-474_Trastuzumab_2h_R1 7 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)VS(1)PCSNVESR;S(1)VS(1)PCSNVESR;S(1)VS(0.997)PCS(0.003)NVESR;S(1)VS(1)PCSNVESR;S(1)VS(0.897)PCS(0.103)NVESR;S(1)VS(1)PCSNVESR;S(1)VS(0.999)PCS(0.001)NVESR 206.7 3.7294e-08 16673410000.0 7038930.0 7499690.0 6040630.0 6418600.0 6587200.0 7981450.0 7152600.0 6820770.0 8338110.0 7209140.0 True False 7001033.182978651 7749312.647991659 6891098.197902796 7231194.101886114 7426040.874606698 7429711.147812368 6806601.41241458 7329770.492568261 6283294.51544975 6749046.51314473 1.0373366325662656 1.1482085110687514 1.0210476671751187 1.071439363738616 1.1003096304260795 1.1008534514233896 1.0085278563657478 1.0860453366697782 0.9309899558718612 1.0 22.68625226586943 1.2453278627208837 24.999044704518624 0.9654949668852499 1.0720320005251358 0.5028766542080608 0.0422457529010281 105.76789550883194 390730.1596613761 0.02779980859096673 0.009641596552570995 17.592512274866372 -1.2453278627208837 0.10653703363988587 S(ph)VS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSPPPK 7 0 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 S(1)VS(1)PPPK;S(1)VS(1)PPPK;S(1)VS(1)PPPK;S(1)VS(1)PPPK 86.624 0.029151 3516380000.0 8353100.0 7224700.0 5438700.0 5862300.0 6194700.0 7597300.0 7757700.0 7389200.0 11412400.0 8142300.0 True False 8308127.837716661 7465169.772076628 6204421.685972156 6604466.578924844 6983558.326136467 7072116.533120529 7382430.413708099 7940619.625597327 8599966.938325217 7622651.443026254 1.0899262415202693 0.9793403027638498 0.8139453485897488 0.8664264171447957 0.9161586855090331 0.9277764549487051 0.9684858961329097 1.041713593353658 1.1282120142320138 1.0 22.86186147758741 1.8015396341580197 2.3676720357873116 1.0690859455111401 0.9258608804755533 0.3603209705688377 0.07382701443731896 0.29977366784761805 3.2425819749895877 0.04775157400312573 0.02206275728423177 63.319814538359225 -1.8015396341580197 -0.14322506503558685 S(ph)VS(ph)PPPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 S(1)VS(1)PPPKR;S(1)VS(1)PPPKR 94.363 0.036439 9048000000.0 2943840.0 2745240.0 1951520.0 2224980.0 2428700.0 2859390.0 2880440.0 2625340.0 3937210.0 3006240.0 True False 2927990.692531368 2836613.6538673746 2226277.0530840764 2506662.2398676625 2737980.5489672846 2661727.0995800504 2741102.112850635 2821256.2020063954 2966937.3514110455 2814379.189428451 1.0403682288192266 1.0079003087154859 0.7910366383629324 0.8906625835222722 0.9728541765984698 0.9457599422203653 0.9739633248948599 1.002443527369651 1.0542066835043562 1.0 21.424385289459813 1.9205235734922184 1.423977185943409 1.0267819084228587 0.934295373893926 0.22249415626401114 0.06498893663276538 0.6445131682512218 2.4317143143802964 0.05014142527584929 0.022314813019987986 83.27671273346301 -1.9205235734922184 -0.09248653452893263 S(ph)VS(ph)PYSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVSPYSR 7 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(1)VS(0.996)PY(0.004)SR;S(0.999)VS(0.727)PY(0.272)S(0.003)R;S(1)VS(0.739)PY(0.26)S(0.001)R;S(1)VS(0.994)PY(0.005)S(0.001)R;S(1)VS(0.967)PY(0.032)S(0.001)R 99.53 0.015291999999999997 4096720000.0 4154520.0 4330550.0 3275520.0 4053370.0 4057180.0 4338440.0 4287490.0 4023970.0 5127580.0 4227730.0 True False 4132152.525930567 4474689.738877241 3736684.744669781 4566526.226398613 4573837.824210108 4038533.8543892545 4080087.7288976554 4324259.074705631 3863956.615051835 3957912.6518582427 1.0440231731719796 1.1305680878976374 0.9441049041128801 1.153771350728174 1.1556186875581218 1.020369626523506 1.030868563251908 1.0925605123385904 0.9762612151730293 1.0 21.916308342871428 1.2349635119642535 24.989306063060514 0.9881305666027019 1.0720384704663535 0.220413164127228 0.06269851863538818 141.18454029045517 980743.5066008664 0.05113244442294968 0.01474516436699551 17.177640600429037 -1.2349635119642535 0.08390790386365155 S(ph)VS(ph)RS(ph)PVPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSRSPVPEK 10 1 Q13243;Q13243-3 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 3 S(1)VS(1)RS(1)PVPEK;S(1)VS(1)RS(1)PVPEK 97.273 0.005031600000000001 2214800000.0 2366600.0 2235000.0 1422440.0 1600240.0 1749030.0 2609300.0 2170390.0 2109840.0 2859500.0 2089580.0 True False 2353858.4885539804 2309390.623913969 1622707.187929877 1802830.2199236955 1971758.6031869927 2428925.232631516 2065399.9440050423 2267286.9743504366 2154814.54033691 1956221.2154205586 1.203268050667744 1.1805365393798186 0.8295110875694184 0.9215881137124432 1.0079425515089784 1.2416413918245608 1.0558110339075388 1.1590135903229142 1.1015188483546106 1.0 20.899638093164683 S(ph)VSEESANSLVSVGVEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSEESANSLVSVGVEAK 18 0 Q8NEZ4;Q8NEZ4-3;H0YMU7;C9J4Z5 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 S(0.617)VS(0.383)EESANSLVSVGVEAK 128.26 2.4858e-05 49156000.0 86643.0 93871.0 85488.0 89251.0 94954.0 114720.0 98947.0 93957.0 132630.0 108500.0 True False 86176.52371494219 96995.43948878221 97523.96732498342 100550.16744888884 107045.82906354808 106789.67642183245 94160.55559575329 100968.54844397875 99945.11365094747 101575.43710847663 0.8483992406836576 0.9549103823712494 0.9601136859576939 0.989906322938164 1.0538554606388688 1.0513336635488688 0.927001234512979 0.9940252419110955 0.9839496289266463 1.0 16.63219204735309 5.068582820420927 1.1526397103008228 0.9978039936613391 0.6715935450519069 0.6288323841099175 0.03461018526944655 2.1393997619798397 1.4355247662946293 0.010615146552145986 1.0067612391162357 117106.99053075365 -5.068582820420927 -0.32621044860943216 S(ph)VSENSLVAMDFSGQTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSENSLVAMDFSGQTGR 18 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 S(0.499)VS(0.499)ENS(0.003)LVAMDFSGQTGR;S(0.5)VS(0.5)ENSLVAMDFSGQTGR 92.211 0.0024933000000000004 35395000.0 36437.0 36452.0 33689.0 37380.0 34365.0 40571.0 38704.0 38111.0 43281.0 46704.0 True False 36240.82724053129 37665.282784300696 38432.11836996267 42112.30416734224 38741.179052686886 37766.42226386125 36831.739656361846 40955.03634373673 32614.977485686934 43723.31073469393 0.8288674080614536 0.8614462663371404 0.8789846359797095 0.9631545155140008 0.8860531922608097 0.8637594369973919 0.8423822221480657 0.9366865330085672 0.7459402533259526 1.0 15.416115025748791 4.491210247249434 2.5161420698694212 0.8889204657729708 0.8291378988486465 0.0786006329731802 0.06592607322297392 0.9000773107481692 9.860939124710209 0.01563133670213807 0.09048217398731359 30989.19160654604 -4.491210247249434 -0.059782566924324265 S(ph)VSGS(ph)PEPAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(0.994)VS(0.006)GS(1)PEPAAK 153.81 4.7221e-05 300260000.0 598230.0 518130.0 452290.0 457260.0 499870.0 619880.0 632910.0 567810.0 791540.0 624390.0 True False 595009.196149602 535375.6438338014 515968.5006248457 515149.0691160765 563525.4815383849 577029.1546405641 602293.725349007 610182.8654807582 596475.5730925957 584540.8956328264 1.0179085853444738 0.9158908261742773 0.8826901667269251 0.8812883289515168 0.9640480003170863 0.9871493319827862 1.0303705520842326 1.0438668535247166 1.020417181328004 1.0 19.15694443651239 2.6947008341803063 2.0206937622583463 1.0283424262853276 0.921947247103285 0.5668941178555889 0.038032584769778596 0.22666020500918385 1.8294752850852913 0.014668265048245107 0.014048194274986625 495.10901510785874 -2.6947008341803063 -0.10639517918204255 S(ph)VSHGSNHTQKPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.76)VS(0.24)HGSNHTQKPDEQR;S(0.987)VS(0.013)HGSNHTQKPDEQR;S(0.972)VS(0.027)HGS(0.001)NHTQKPDEQR;S(0.583)VS(0.417)HGSNHTQKPDEQR;S(0.573)VS(0.427)HGSNHTQKPDEQR 256.4 7.3998e-27 1568761000.0 447928.0 668884.0 732839.0 807717.0 802652.0 934842.0 795063.0 371926.0 836419.0 845633.0 True False 445516.4054174788 691147.3995910836 836016.3612492225 909973.8893829102 904864.9745088676 870218.5729213617 756602.7652543933 399681.00672196015 630294.7448903847 791663.9779571643 0.5627594760179742 0.873031259265507 1.0560242533789481 1.1494446061964783 1.1429912181223791 1.09922719379869 0.9557120019616857 0.5048619336619434 0.7961644870047239 1.0 19.594528682264137 1.9218710048293801 9.908639516910176 0.7157989964410039 0.9969215763066646 0.17513319566495644 0.19852792014476306 0.6853390386322898 83.82844583997857 0.08602849683833146 0.05466757839380697 83.53548623090616 -1.9218710048293801 0.2811225798656607 S(ph)VSPER ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSPER 6 0 Q14966;Q14966-3;Q14966-4;A0A096LPI0;Q14966-2;Q14966-6;A0A096LPB4;A0A096LNR2;A0A096LNX0;A0A096LNQ0 Q14966 ZNF638 Zinc finger protein 638 1 S(0.5)VS(0.5)PER 75.243 0.08203200000000001 392200000.0 154640.0 229520.0 185490.0 192800.0 224820.0 143660.0 203580.0 170490.0 208290.0 204960.0 True False 153807.43542211904 237159.4344522302 211605.37969201748 217208.46023177064 253449.4943874604 133729.1223392648 193732.05764887732 183212.82953067828 156959.72044300553 191879.27732491586 0.8015844001834109 1.2359825290077566 1.1028047564182697 1.1320058281435155 1.3208799716203097 0.6969440588043108 1.0096559688455782 0.9548338522269793 0.8180128809700495 1.0 17.549839385475533 2.740960039105413 24.999609050384972 0.9077727193354741 1.1250314128131564 0.3492745272699258 0.1514707454578113 246.44673204865876 2567740.246332056 0.0453558750811571 0.0460985543147282 550.7570170700685 -2.740960039105413 0.21725869347768234 S(ph)VSPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 S(0.807)VS(0.193)PPPKR 91.584 0.0075851 794720000.0 1286000.0 1584800.0 1326800.0 1281900.0 1504700.0 1682300.0 1589400.0 1541100.0 1936700.0 1414400.0 True False 1279076.3188880319 1637549.1099681677 1513601.9072476611 1444188.4085638311 1696314.6259443632 1566006.5607082357 1512514.649902377 1656104.7075472344 1459426.2354504257 1324131.781071238 0.9659735814612381 1.2366964779316538 1.1430900827885422 1.0906681866630117 1.2810768914344952 1.1826666976011393 1.1422689731672593 1.2507098849386626 1.102175973957617 1.0 20.33661527941268 4.750216443841858 24.565706787203087 1.1713452797741206 0.9659734240468698 0.33017247266402494 0.08064422166830072 1423.9179364021172 3000962.7367137442 0.017758511861479392 0.28062860420109254 56262.165491415224 -4.750216443841858 -0.2053718557272508 S(ph)VSPSPVPLLFQPDQNAPPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 S(0.499)VS(0.499)PS(0.001)PVPLLFQPDQNAPPIR 165.9 1.4799e-11 29590000.0 27139.0 33579.0 33671.0 33653.0 28546.0 34317.0 37120.0 33994.0 40267.0 39150.0 True False 26992.886639426364 34696.65671606585 38411.58412642146 37913.46634948015 32181.163894602065 31944.746563528784 35324.363787829476 36530.80489803432 30343.737400156082 36651.41348199871 0.7364760066534374 0.9466662652207688 1.0480246319909943 1.0344339480413571 0.8780333645360717 0.8715829357909595 0.9637926735125506 0.9967093060674557 0.8279008779582093 1.0 15.161581217312289 4.736106499992899 6.169520211657425 0.9553713640706967 0.7313634849701347 0.46571280496319023 0.0691872366402989 0.11011432328119138 22.102395125710554 0.016968125383991783 0.10402686989042383 54463.61950399595 -4.736106499992899 -0.22400787910056197 S(ph)VSRS(ph)PVPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSRSPVPEK 10 1 Q13243;Q13243-3 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 2 S(0.983)VS(0.104)RS(0.913)PVPEK;S(0.665)VS(0.56)RS(0.775)PVPEK 71.279 0.016114 0.0 1218920.0 1300800.0 1184270.0 1072220.0 1290810.0 1450760.0 1352470.0 1229720.0 1426690.0 1301360.0 True False 1212357.4701547425 1344096.341649796 1351004.9221406295 1207962.9420628059 1455187.0022697153 1350472.3759217006 1287045.8591628694 1321487.9507916337 1075101.366166556 1218306.0906496493 0.9951173021783591 1.1032501207747147 1.1089207650765498 0.9915102217199554 1.1944346444937755 1.1084836448626594 1.056422412266334 1.0846928870617103 0.882455874117209 1.0 20.216445214870408 1.2533465853091719 24.984535581164817 0.9412279588661884 1.0827115333064115 0.44966428616617327 0.061521382387464144 167.8081409318907 283555.91544027213 0.03932110567241932 0.014228030166603668 17.920354033545753 -1.2533465853091719 0.14148357444022308 S(ph)VSSSPWLPQDGFDPSDYAEPMDAVVKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSSSPWLPQDGFDPSDYAEPMDAVVKPR 29 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 S(0.25)VS(0.25)S(0.25)S(0.25)PWLPQDGFDPSDYAEPMDAVVKPR 53.408 0.04309 34776000.0 31489.0 22799.0 19414.0 20058.0 22808.0 21302.0 19174.0 19762.0 36238.0 21648.0 True False 31319.466722756777 23557.85093271347 22147.322450486965 22597.34074340692 25712.463606392626 19829.442879514238 18246.48036820696 21236.740789402673 27307.63046432206 20266.40610621474 1.54538829226128 1.162408905123509 1.0928095654658492 1.1150147009280245 1.2687233973125525 0.9784390372713143 0.900331330211114 1.0478789716391983 1.347433300270644 1.0 14.306802654223059 4.779268887840894 2.4557310448078216 1.0858521121583107 1.6789296974817185 0.5343384599431162 0.12556405916720512 0.4953947400863745 3.3768167721580244 0.03217825229118538 0.6439397226283501 60154.606171620355 -4.779268887840894 0.5930775853234078 S(ph)WASPVYTEADGTFSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SWASPVYTEADGTFSR 16 0 E9PMS6;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 S(1)WASPVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(0.999)WAS(0.001)PVYTEADGTFSR;S(1)WASPVYTEADGTFSR 325.46 7.839899999999998e-59 2765220000.0 1182260.0 865571.0 841909.0 914394.0 743094.0 908570.0 949595.0 892782.0 1138522.0 1100953.0 True False 1175894.8435214353 894381.007486281 960442.4691957874 1030156.1866450721 837722.616236792 845762.6944437263 903659.4620448247 959405.9262951362 857948.5085131864 1030689.2369667152 1.1408820441184149 0.8677504095399454 0.9318448614272312 0.9994828214921387 0.8127790474480768 0.820579728699582 0.8767525939285686 0.9308391820590235 0.8324027046581963 1.0 19.97517798072162 4.742457608333737 24.62904084010128 0.8948296254501176 1.1408821622314045 0.5609844476132055 0.06471664919842045 229.0883035401476 1447768.64654709 0.015282264764126419 0.1153360281869571 55265.94599901908 -4.742457608333737 0.2460525367812869 S(ph)WDSSSPVDRPEPEAASPTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 S(1)WDSSSPVDRPEPEAASPTTR 169.6 5.6303e-12 336150000.0 39568.0 37190.0 30860.0 23097.0 29954.0 31667.0 25398.0 26356.0 30141.0 30082.0 True False 39354.97028441806 38427.846668170256 35204.819760071485 26021.077831811235 33768.46434873226 29477.934826099783 24169.401710218026 28322.818553056204 22713.15441870774 28162.141005504072 1.3974424130866483 1.3645214921926507 1.250076112934417 0.9239737073514978 1.1990730513753367 1.046722080552702 0.8582231622764158 1.0057054450341942 0.8065137666297684 1.0 14.781469397495105 4.328622792639563 0.527162876237697 0.9209866082997327 1.6524103503433896 0.7291885997523682 0.10222881890883484 1.450832193879566 0.4195277647321247 0.0615573888543593 0.6223600348979712 21311.930569581094 -4.328622792639563 0.7314237420436569 S(ph)WGEQCPETSGTDSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SWGEQCPETSGTDSGR 16 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 S(1)WGEQCPETSGTDSGR;S(1)WGEQCPETSGTDSGR;S(1)WGEQCPETSGTDSGR 251.35 5.6418e-20 822500000.0 321752.0 324130.0 297688.0 299403.0 302239.0 300107.0 299246.0 296188.0 335484.0 289517.0 True False 320019.72298200795 334918.47110927704 339599.8828495186 337307.38910151896 340727.34513909597 279361.30946588947 284770.3277492678 318291.0525721889 252808.46345528503 271039.7771920257 1.1807112826663855 1.235680144733866 1.252952191622116 1.2444940465787948 1.2571119585067332 1.0307022547025197 1.0506588025547052 1.1743333612124642 0.9327356525834798 1.0 18.04814506825405 2.7401234006359245 24.99841450575341 1.0598395422104023 1.2358875189659353 0.7142204949998263 0.061350215190005865 86.89325343825544 1389960.0154615818 0.019536282349314996 0.01975018402798309 549.6970428428326 -2.7401234006359245 0.17604797675553296 S(ph)WGQQAQEYQEQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SWGQQAQEYQEQK 13 0 Q5VZK9;Q5VZK9-2 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 S(1)WGQQAQEYQEQK;S(1)WGQQAQEYQEQK;S(1)WGQQAQEYQEQK 297.45 9.9666e-41 455120000.0 225677.0 179334.0 183918.0 180958.0 213179.0 393896.0 377675.0 305081.0 434732.0 358839.0 True False 224461.98010707166 185303.02378030765 209812.05575608657 203867.2642459582 240326.08203907317 366666.8966514484 359405.41739139246 327847.6933899278 327598.1237103496 335937.5878024758 0.6681657196367398 0.5515995545257708 0.6245566538968294 0.6068605349569511 0.7153890804871167 1.0914732675494496 1.0698577070295427 0.9759184601358015 0.9751755552372734 1.0 18.357833701096947 2.873127177737676 3.894754367110872 1.020580567946458 0.6134398638008061 0.9489827441002938 0.04550902156290911 0.05052295452744167 1.3362893747908486 0.015208096471613638 0.016322343501198863 746.6673786538813 -2.873127177737676 -0.40714070414565184 S(ph)WHEESPFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SWHEESPFEK 10 0 Q9BY84 Q9BY84 DUSP16 Dual specificity protein phosphatase 16 1 S(1)WHEESPFEK;S(1)WHEESPFEK;S(0.999)WHEES(0.001)PFEK 237.87 2.2315e-12 1193650000.0 1639440.0 1621820.0 1498770.0 1488650.0 1537930.0 2059520.0 2011610.0 1688270.0 2446550.0 2059340.0 True False 1630613.4371989085 1675801.2982891083 1709783.7884576248 1677112.937365277 1733776.2694747194 1917150.2299886025 1914300.7392035488 1814257.2802613515 1843630.534590406 1927911.1581103238 0.8457928314483034 0.8692315987898916 0.8868581839287136 0.8699119408640846 0.8993029902758127 0.9944183485445103 0.9929403287856295 0.9410481767425568 0.9562839692247401 1.0 20.878607140234987 2.9009067789875664 3.891809446516481 0.97173123189388 0.8704544707760391 0.8724771479001516 0.019826925245069467 0.08904352928993815 2.4229005480904355 0.0066906274240760314 0.007244013659245179 795.98847369919 -2.9009067789875664 -0.1012767611178409 S(ph)WRT(ph)S(ph)QRDT(ph)SDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SWRTSQRDTSDVK 13 2 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9;Q8NFP9-3 Q5T321 NBEA Neurobeachin 4 S(0.999)WRT(0.999)S(1)QRDT(0.58)S(0.423)DVK 69.516 0.018096 529710000.0 1597600.0 1781800.0 701910.0 1154600.0 1161300.0 1680800.0 1417500.0 1353500.0 3012000.0 1485200.0 True False 1588998.6991100463 1841106.1358791564 800732.8268889093 1300772.2416161948 1309184.6714356274 1564610.2521776133 1348930.1096241442 1454505.0429337395 2269732.9587322176 1390413.2644563061 1.1428247555818543 1.3241431040282006 0.5758955609518155 0.9355292234822259 0.9415795324331564 1.1252843252969278 0.9701648740754907 1.046095488381647 1.6324160713611662 1.0 20.407082319875986 1.424753909204632 14.871983400833894 1.3240518520629903 1.0005613217945057 0.22510271655821812 0.230124191201029 2.4310844022643723 688.4425740893012 0.1391225230204833 0.05466837995748336 26.592178003362953 -1.424753909204632 -0.3234905302684845 S(ph)WSYNGYYSDLSTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SWSYNGYYSDLSTAR 15 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 S(0.993)WS(0.007)YNGYYSDLSTAR 88.565 0.0058893 0.0 61275.0 70104.0 59476.0 55554.0 59901.0 81959.0 47678.0 55992.0 73394.0 73840.0 True False 60945.102208292505 72437.36926123704 67849.70382534059 62587.130703920026 67529.03728895672 76293.36724073366 45371.632992352745 60170.407361614925 55307.03212921393 69127.46798239552 0.881633654277822 1.0478811299682558 0.981515825845374 0.9053872871469688 0.9768770542290676 1.1036621109883997 0.6563473871762148 0.8704268956724748 0.8000731654643968 1.0 16.07697146277966 2.2478639902001496 24.999964832344467 0.820341648246702 0.9819332740024366 0.358338447950836 0.09859146111383255 191.32470218015234 514126.6518655333 0.032426723940394364 0.02678449112334481 176.95546927662252 -2.2478639902001496 0.1615916257557346 S(ph)WTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 S(0.999)WT(0.004)S(0.997)PK;S(1)WT(0.009)S(0.991)PK 90.601 0.071408 1073830000.0 4855600.0 3487600.0 2607000.0 2766700.0 2932200.0 4010000.0 3793900.0 3930500.0 5974900.0 3828900.0 True False 4829457.989107882 3603682.6577012753 2974042.9395497837 3116963.9363238616 3305598.289488974 3732798.1385246487 3610374.562894565 4223813.868674594 4502465.954558139 3584536.3239137875 1.3473034034803202 1.0053413697218676 0.8296869304151911 0.8695584741405534 0.9221829522094913 1.041361504309986 1.0072082514015552 1.1783431626835377 1.256080437662327 1.0 21.773355081151294 1.7846707588906359 4.6617115247469965 1.1628783867177643 0.988393306979294 0.1581270307387539 0.14535943334335097 0.32093637441610257 13.561937996839545 0.07416674448288323 0.039947804849585586 60.90749789755903 -1.7846707588906359 -0.17448507973847038 S(ph)WTSPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.97)WT(0.027)S(0.003)PK;S(0.907)WT(0.02)S(0.074)PK;S(0.999)WT(0.001)SPK;S(0.993)WT(0.007)SPK;S(0.992)WT(0.008)SPK;S(0.984)WT(0.016)SPK 128.61 0.017363999999999997 19043230000.0 6754910.0 5621180.0 5024370.0 4818850.0 4891990.0 6264370.0 6162230.0 5745040.0 8272550.0 6378440.0 True False 6718542.315101053 5808277.578224935 5731757.623393081 5428915.915912183 5514955.929403569 5831328.846640818 5864139.392895386 6173764.057522005 6233890.898990771 5971362.498342771 1.125127191150369 0.9726888260153194 0.9598743377217197 0.9091586580816132 0.923567432212352 0.9765491289901063 0.9820437788733906 1.0338953729965994 1.0439645726952365 1.0 22.509628721137503 1.8182744819202041 3.8980945861688254 1.0293168038381726 0.9717484054938077 0.12586885956520044 0.05572662343967604 0.42183796945199953 10.996274818993182 0.029199125272472457 0.01563162888972143 65.80736203091534 -1.8182744819202041 -0.05756839834436489 S(ph)Y(ph)KCKECGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYKCKECGK 9 2 A0A0A0MR41;A6NNF4-3;A6NNF4;F5H2M4;A0A087X0A2;A0A087WZJ7;A0A494C0U8;O75437-2;O75437;Q8N7M2;A0A087WTN2;Q96JC4 A0A0A0MR41;A0A087WTN2 ZNF726;ZNF254;ZNF283;ZNF479 Zinc finger protein 726;Zinc finger protein 254;Zinc finger protein 283;Zinc finger protein 479 2 S(1)Y(1)KCKECGK 87.913 0.031066000000000007 92637000.0 82094.0 83797.0 77202.0 75840.0 74618.0 99542.0 90691.0 51929.0 116060.0 84882.0 True False 81652.01502550076 86586.13248864377 88071.37054818666 85441.33622394953 84120.16000446356 92660.89583666365 86303.92985673602 55804.20567011902 87458.56812432293 79464.75808886364 1.0275248674914628 1.089616763091589 1.1083072882408884 1.075210423825898 1.05858448484036 1.1660627687690568 1.0860654701826977 0.7022509979545202 1.1005956631305664 1.0 16.278027559405018 1.9329246084124423 24.997209278717815 0.8994383925072728 1.08999058843475 0.31133116453928555 0.10034397529042935 161.60632071835084 60225.758677303296 0.03905643872955086 0.02520730676062558 85.6889080190834 -1.9329246084124423 0.1905521959274773 S(ph)Y(ph)SSIVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSSIVLK 8 0 O94769 O94769 ECM2 Extracellular matrix protein 2 2 S(0.404)Y(0.596)S(0.519)S(0.481)IVLK 78.192 0.019506 0.0 148610.0 251910.0 229040.0 246900.0 211740.0 197970.0 194170.0 207820.0 162590.0 249080.0 True False 147809.9002721231 260294.67206718953 261286.84114863176 278157.5146847728 238703.83391869394 184284.79987125326 184777.2552985682 223328.5836885771 122521.87309437944 233183.50115188354 0.6338780382916005 1.1162653909105138 1.1205202763399764 1.192869621181284 1.023673770826585 0.7902994807133451 0.7924113600910982 0.9577375010898072 0.5254311410933619 1.0 17.83110618901116 2.7580670426528764 9.721165780524393 0.8211339728030214 1.0385342918440736 0.23015549394038792 0.18450408580389824 0.582620608759824 280.8741584683857 0.05578696849323414 0.0581442520438149 572.8844611439238 -2.7580670426528764 0.21740031904105228 S(ph)YDNLTTACDNTVPLASR ddPTM_BT-474_Trastuzumab_2h_R1 4 SYDNLTTACDNTVPLASR 18 0 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 S(1)YDNLTTACDNTVPLASR;S(1)YDNLTTACDNTVPLASR;S(0.998)YDNLT(0.002)TACDNTVPLASR;S(1)YDNLTTACDNTVPLASR 310.55 4.0213999999999994e-61 2615150000.0 1087070.0 1113550.0 1117330.0 970030.0 1046360.0 1131220.0 1136090.0 1053990.0 1263680.0 1165360.0 True False 1081217.335904831 1150613.8385948096 1274640.3519935415 1092835.6985405828 1179607.7437383821 1053021.4240054495 1081132.986414742 1132644.0858527755 952262.9964444629 1090985.727085109 0.9910462704160419 1.054655262694421 1.1683382470998223 1.001695688045724 1.0812311421250698 0.9652018334088637 0.9909689554814877 1.0381841464406405 0.8728464294292053 1.0 20.057200796926825 2.737669952405949 24.987000621397137 0.982417659358242 1.061977169392784 0.33253717473129396 0.060163493331201794 102.00565306527035 2861660.375305757 0.01883552378954038 0.018736254017508662 546.6004091049397 -2.737669952405949 0.07955951003454198 S(ph)YDVPPPPMEPDHPFYSNISK ddPTM_BT-474_Trastuzumab_2h_R1 6 SYDVPPPPMEPDHPFYSNISK 21 0 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 S(1)YDVPPPPMEPDHPFYSNISK;S(0.994)Y(0.006)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK 221.85 2.6737e-25 2677850000.0 3236220.0 2764720.0 2665800.0 2418320.0 2147370.0 3652290.0 3588250.0 3050950.0 4409570.0 3583050.0 True False 3218796.5510978396 2856742.0338914683 3041121.468451025 2724479.064044065 2420824.841040834 3399815.7888658815 3414672.639053853 3278627.3814101866 3322890.5587107637 3354376.6813965645 0.9595811254440639 0.8516461641696392 0.9066129887311527 0.8122161947863746 0.721691411243935 1.0135462149261063 1.0179753090914598 0.9774177717110649 0.9906134207107915 1.0 21.677613275480144 2.7022744075822938 24.99317985296519 0.9982870042045481 0.8514288048284946 0.6202278242351497 0.05850599443617958 408.06845541135056 281068.6358986402 0.019526899614005246 0.018410629931068997 503.81884456813555 -2.7022744075822938 -0.1468581993760535 S(ph)YEDMIGEEVPSDQYYWAPLAQHER ddPTM_BT-474_Trastuzumab_2h_R1 10 SYEDMIGEEVPSDQYYWAPLAQHER 25 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(0.955)Y(0.045)EDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER;S(1)YEDMIGEEVPSDQYYWAPLAQHER 295.78 3.568199999999998e-63 8851130000.0 1681744.0 1519131.0 1399851.0 1426749.0 1160417.0 1700845.0 1496970.0 1412387.0 1820504.0 1566455.0 True False 1672689.6771633222 1569694.3570009177 1596937.8530769872 1607375.2771121305 1308189.2266195766 1583269.5885084693 1424555.8421192637 1517786.4898958665 1371865.182703795 1466482.5007904023 1.1406134585729995 1.0703805576642655 1.0889580013510372 1.0960753205345377 0.8920592137406965 1.0796375597084324 0.9714100518427319 1.0349843854787306 0.9354800906007329 1.0 20.483928425162627 3.3573954638045493 22.681325330697927 0.9938604082595552 1.0962724352185778 0.5387481935168009 0.05104152797477792 3.1112443685756777 591.5153363962444 0.013094582838632405 0.017730155659055533 2277.1700531160404 -3.3573954638045493 0.10241202695902252 S(ph)YELPDGQVITIGNER ddPTM_BT-474_Trastuzumab_2h_R1 4 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;A0A2R8YEA7;Q562R1;Q9BYX7;P63261;P68133;P68032;P63267;P62736;Q6S8J3;A5A3E0 P60709;P63261;P68133;Q6S8J3 ACTB;ACTG2;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;POTEE;POTEF Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F 1 S(1)YELPDGQVITIGNER;S(1)YELPDGQVITIGNER;S(1)YELPDGQVITIGNER;S(1)YELPDGQVITIGNER 236.43 1.0404000000000002e-19 664030000.0 670686.0 692539.0 562600.0 556999.0 521200.0 713400.0 628447.0 566854.0 753040.0 673020.0 True False 667075.1010962198 715589.741966334 641809.1897931364 627515.0162896058 587571.7306055696 664084.3371629639 598046.6177093225 609155.523906288 567463.3822190257 630067.287398589 1.058736288072387 1.1357354306090843 1.0186359498888242 0.9959492086638541 0.9325539388523497 1.0539895507110424 0.949178968136129 0.966810269457662 0.9006393341923191 1.0 19.265146382434367 3.9772582094346687 2.676284721584863 0.9698915946452612 1.0969804090285245 0.564578441897102 0.04339258678115298 0.18190968099063065 2.592329019084613 0.01108644232839036 0.02611669948715409 9489.825123957595 -3.9772582094346687 0.12708881438326325 S(ph)YENLAAEIMPVEYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SYENLAAEIMPVEYR 15 0 Q9UJC3;Q9UJC3-2 Q9UJC3 HOOK1 Protein Hook homolog 1 1 S(1)YENLAAEIMPVEYR;S(0.997)Y(0.003)ENLAAEIMPVEYR;S(0.981)Y(0.019)ENLAAEIMPVEYR;S(0.889)Y(0.111)ENLAAEIMPVEYR 159.18 1.8677e-06 138968000.0 99643.0 96271.0 87380.0 96383.0 89305.0 100151.0 90517.0 81755.0 120818.0 104938.0 True False 99106.53315937803 99475.32203795151 99682.34447942466 108585.07791762832 100677.46239779434 93227.79710009527 86138.34690148055 87855.97324347816 91044.0227782565 98240.76699805826 1.008812697495907 1.0125666266420503 1.0146739233153066 1.1052955024239024 1.024803301869419 0.9489726103414677 0.8768085748270174 0.8942924198180847 0.9267438107446372 1.0 16.584034203897357 2.650310893758619 3.3683305211176817 0.9122430687373934 1.0357113448657997 0.6217959734417537 0.0403157303820008 0.1467923268507137 3.194224107707426 0.013695722010682922 0.01295903011722669 447.0034692496372 -2.650310893758619 0.12346827612840638 S(ph)YKCNECGKVFSHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYKCNECGKVFSHK 14 2 Q6PDB4 Q6PDB4 ZNF880 Zinc finger protein 880 1 S(0.946)Y(0.013)KCNECGKVFS(0.041)HK 51.265 0.086563 536930000.0 421550.0 237270.0 151290.0 122250.0 128540.0 184200.0 154890.0 145590.0 325570.0 175440.0 True False 419280.4216386078 245167.3885172564 172590.3169637463 137726.83746542523 144908.80708372992 171466.68756015977 147397.37896273998 156454.66509104028 245337.63591449137 164243.26899825913 2.5528012453469366 1.4927088946327232 1.050821248361634 0.8385539225165145 0.8822815569097437 1.0439799975119664 0.8974333003826312 0.9525788548004278 1.4937454509450356 1.0 17.325474721807478 4.716066414957081 1.9534635689099824 0.995139949650965 2.9792174580969166 0.8773710297328254 0.17399560469434666 0.22166733222072108 0.9326819612926662 0.04432881019820529 0.7798927699988021 52007.552356887136 -4.716066414957081 1.9840775084459517 S(ph)YS(ph)PAHNR ddPTM_BT-474_Trastuzumab_2h_R1 4 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 S(0.996)Y(0.007)S(0.997)PAHNR;S(0.998)Y(0.014)S(0.988)PAHNR;S(0.997)Y(0.23)S(0.773)PAHNR;S(0.997)Y(0.008)S(0.995)PAHNR 110.39 0.0018146 3649300000.0 1878150.0 1870450.0 1307318.0 1616390.0 1758460.0 1799860.0 1719610.0 1660220.0 2019070.0 1676860.0 True False 1868038.2490820815 1932706.7975390996 1491377.0109882401 1821024.808267799 1982389.4577910013 1675439.9146147063 1636425.8947518698 1784114.0468263389 1521497.2526518786 1569841.3591679267 1.1899535186614079 1.231147839399202 0.95001765769423 1.1600056258124125 1.262796043825562 1.0672670234034034 1.0424148180292787 1.1364932108630292 0.9692044637289514 1.0 20.582187343787822 1.544760786329725 0.7924216712664448 0.9902493489100554 1.1471641089012983 0.28530484966379543 0.08895057143863323 0.8415341543874312 1.083386090372819 0.08362392218569534 0.03528321255523113 35.05587295698733 -1.544760786329725 0.15691475999124282 S(ph)YS(ph)PDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYSPDGK 7 0 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 2 S(1)Y(0.028)S(0.972)PDGK;S(0.997)Y(0.252)S(0.751)PDGK 73.067 0.079998 303070000.0 1845140.0 1399500.0 876100.0 1106750.0 1135690.0 1497610.0 1532490.0 1574360.0 2302600.0 1569640.0 True False 1835205.9712543264 1446081.5114843852 999447.2648022877 1246864.4365223667 1280313.389737989 1394083.7456947395 1458357.6040196863 1691846.7376380914 1735155.0832592277 1469464.231363586 1.248894618926077 0.9840875882650763 0.6801439895375017 0.8485163571251692 0.8712790433489662 0.9487020615677748 0.9924417164386552 1.1513357736296488 1.1808079749236866 1.0 20.486858811700685 1.9725742520414982 2.6667814507337297 1.125047922836799 0.9145945345650248 0.2392022156321023 0.14102998628970692 0.372273301224565 4.9319253175405855 0.07700018907162724 0.042458514772261695 93.88025315638049 -1.9725742520414982 -0.2104533882717743 S(ph)YSHDVLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYSHDVLPK 9 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 S(0.499)Y(0.001)S(0.499)HDVLPK;S(0.92)YS(0.08)HDVLPK 86.31299999999997 0.0091613 578010000.0 1894910.0 1923430.0 1758660.0 1667020.0 1773900.0 2327770.0 2006670.0 1902630.0 2778920.0 2075920.0 True False 1884708.0151042927 1987450.204812014 2006264.0414532514 1878064.5610765866 1999795.6502709514 2166856.7388811787 1909599.7058761797 2044613.9119593785 2094092.4016202274 1943433.0083154694 0.9697828569547254 1.0226491967092284 1.0323299197188396 0.9663644453093123 1.0290015872501497 1.1149634330639309 0.9825909602777532 1.0520629747518855 1.077522298252692 1.0 20.890175947010643 3.0079395657029657 24.853135468734568 1.0464713948822297 1.001482767188989 0.2433159944432668 0.0394520335673049 257.9730568629255 807522.92372783 0.011043664559972705 0.013179163908474957 1018.4496557176017 -3.0079395657029657 -0.044988627693240746 S(ph)YSLDLDGQHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSLDLDGQHFR 12 0 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 S(0.559)YS(0.441)LDLDGQHFR 92.38 0.005003199999999999 152670000.0 105630.0 91289.0 77874.0 97989.0 81297.0 81898.0 62719.0 67494.0 105870.0 81615.0 True False 105061.29981659616 94327.49917963418 88837.98230705792 110394.39735296156 91649.69106492901 76236.58402715517 59685.042360152926 72530.74500758751 79779.7570853185 76406.26082588309 1.3750352219959179 1.2345519615806164 1.1627055341643353 1.444834443665967 1.1995049891759932 0.9977792814764934 0.7811538179595651 0.9492775097694256 1.0441520920271579 1.0 16.221403238914892 2.7674314451918653 3.2493279740276306 0.9316049087077808 1.2911413461299468 0.7469747775928125 0.09687063325864945 0.12158582103458215 2.647069050895033 0.03183075103492814 0.032451214808094576 585.3713262437176 -2.7674314451918653 0.359536437422166 S(ph)YSPAHNR ddPTM_BT-474_Trastuzumab_2h_R1 3 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.837)Y(0.001)S(0.162)PAHNR;S(0.5)Y(0.001)S(0.5)PAHNR;S(0.558)Y(0.004)S(0.438)PAHNR 90.15 0.0086314 798676000.0 671561.0 971834.0 796604.0 856040.0 948921.0 800902.0 891247.0 768199.0 865549.0 835970.0 True False 667945.3901934406 1004180.9072039403 908758.9189939074 964414.5762282404 1069760.4646545833 745537.529860516 848133.977715832 825525.9102154814 652246.0467123865 782617.6788900747 0.8534759796644706 1.2831053198646003 1.1611786233640018 1.2322933690892262 1.3669004592021747 0.9526203534244887 1.0837143098002513 1.0548265551402571 0.8334159376995112 1.0 19.577948174707416 2.708088344953937 24.98808872761132 1.0020205040648906 1.187079969673845 0.32142753003663804 0.13996334451718112 857.7093965925937 703344.3897862765 0.044319329245056376 0.041789475875928274 510.6088583712966 -2.708088344953937 0.18505946560895437 S(ph)YSPDGKESPSDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSPDGKESPSDKK 14 2 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 S(0.498)Y(0.004)S(0.498)PDGKESPSDKK 58.159 0.057954999999999986 7841800.0 17718.0 13040.0 12723.0 15340.0 12196.0 15418.0 14650.0 17111.0 36460.0 17579.0 True False 17622.608256654865 13474.028517153547 14514.287809701535 17282.042427154356 13749.088308644534 14352.189950068105 13941.323531565238 18387.90970789745 27474.921538969626 16457.093169860917 1.0708214430558394 0.8187368436261591 0.881947234538516 1.0501272763530458 0.8354505966961558 0.8720975084684046 0.8471315916894125 1.117324275806652 1.6694881201308667 1.0 14.00642191337884 1.505582947371824 4.777868888793914 1.3546627238398465 0.9104112494784673 0.4930605725430681 0.17153713351285557 0.11326242451202033 5.664214975576655 0.09541694316764847 0.04012312411715348 32.031918246483286 -1.505582947371824 -0.44425147436137924 S(ph)YSPDHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SYSPDHR 7 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 S(0.742)Y(0.007)S(0.252)PDHR;S(0.509)YS(0.49)PDHR;S(0.562)Y(0.002)S(0.436)PDHR 86.833 0.020755000000000003 552789000.0 952353.0 1371376.0 1298859.0 1362249.0 1190109.0 1168852.0 1243646.0 1118299.0 1341067.0 1179952.0 True False 947225.6372643659 1417021.421145702 1481727.0573151887 1534709.5837254634 1341662.3268213056 1088052.012421651 1183486.0917909204 1201752.1499872606 1010579.0072271369 1104646.4531522696 0.857492127514029 1.282782755606579 1.3413586338749965 1.389321967536261 1.214562653048563 0.9849776001332698 1.0713709245285408 1.0879065845528093 0.9148438437866726 1.0 20.075153272064203 2.789454216662143 6.432291700229609 1.0280918564178854 1.238411568774028 0.33561158597945173 0.14204576305255295 0.2710009255289294 26.85171897501478 0.04453140063537341 0.046975231943554845 615.8206058657752 -2.789454216662143 0.21031971235614266 S(ph)YSSTSIEEAMK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSSTSIEEAMK 12 0 Q8NFH8-3;Q8NFH8-2;Q8NFH8-4;Q8NFH8 Q8NFH8-3 REPS2 RalBP1-associated Eps domain-containing protein 2 1 S(0.858)YS(0.093)S(0.046)T(0.004)SIEEAMK 166.48 5.4343999999999987e-05 60320000.0 134080.0 104960.0 94713.0 91762.0 88455.0 113620.0 101820.0 109600.0 158610.0 111720.0 True False 133358.12817768854 108453.53015034024 108047.767139846 103379.05979143019 99719.21993613904 105765.71683271101 96894.57760982755 117778.9085375233 119522.69076511172 104589.93395169587 1.2750570072955496 1.0369404210583855 1.0330608602329465 0.9884226510667373 0.9534303748790363 1.0112418359644262 0.926423547170205 1.1261017584342166 1.1427743210958756 1.0 16.674384483413835 6.334880800901945 7.424016794614745 1.0449561478569143 1.166556023932927 0.0 0.09903830129987473 0.0 0.0 0.021861927099992677 0.0 2162125.012334436 -6.334880800901945 0.12159987607601264 S(ph)YT(ph)PEYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SYTPEYR 7 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 S(0.994)Y(0.007)T(0.999)PEYR;S(0.991)Y(0.011)T(0.998)PEYR;S(0.999)Y(0.01)T(0.988)PEY(0.003)R;S(0.996)Y(0.016)T(0.989)PEYR 105.52 0.04195 5542250000.0 9137730.0 7918710.0 6185350.0 6651240.0 7065870.0 8350820.0 7390100.0 7466690.0 9147480.0 7236180.0 True False 9088533.476977248 8182279.47538873 7056193.515974006 7493286.302033007 7965666.661807319 7773547.469115822 7032612.630076472 8023892.322883562 6893206.123952112 6774360.797194614 1.3416075330296808 1.2078304832504878 1.0416028503967643 1.1061244782144042 1.175855095451374 1.1474953433739445 1.0381219484189275 1.1844500998834313 1.0175434008189694 1.0 22.69165339501983 4.544710844272591 3.2242104880184512 1.1029104326200387 1.3386724005040196 0.6027737039574799 0.06378584254787042 0.17841291461302425 3.2977322999017047 0.014964752275215465 0.08044601992504889 35051.841909341725 -4.544710844272591 0.23576196788398085 SAAAGALGS(ph)PGLPLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAAAGALGSPGLPLRK 16 1 O75145-2;O75145;A0A0C4DGR8;A0A0C4DGR7 O75145-2 PPFIA3 Liprin-alpha-3 1 SAAAGALGS(1)PGLPLRK 153.11 2.9598000000000003e-07 403390000.0 331650.0 324810.0 355550.0 306890.0 274600.0 370080.0 427780.0 353740.0 452940.0 369440.0 True False 329864.4332497788 335621.10449820873 405608.3495039996 345742.2425338591 309568.68231828423 344497.24067461427 407086.6471217047 380137.87505532376 341319.00608504977 345862.022906503 0.9537457465775339 0.9703901621744035 1.1727461318112045 0.9996536758455372 0.8950641059598788 0.9960539690931673 1.1770203727506463 1.0991026764395193 0.9868646554967923 1.0 18.399837082908 SAAEMYGSSFDLDYDFQR ddPTM_BT-474_Trastuzumab_2h_R1 7 SAAEMYGSSFDLDYDFQR 18 0 B4DY08;G3V4W0;G3V5X6;G3V3K6;G3V251;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ;;;;;; 264.28 1.379e-30 2091430000.0 1535725.0 1698485.0 1593215.0 1610961.0 1951563.0 1938343.0 1471311.0 1426501.0 1870033.0 1745438.0 False True 1527456.8272350882 1755018.0464691347 1817525.8235269678 1814908.4974244456 2200082.9802298513 1804349.9107786263 1400138.0659761617 1532953.7482453042 1409188.4243083948 1634042.6524953458 0.9347716994427958 1.0740344162920394 1.112287871281343 1.110686122331568 1.3464048670150106 1.1042244876675675 0.8568552747616542 0.9381357003774236 0.8623939051752558 1.0 20.640014211155634 2.278524499853042 8.292726374705031 0.9105162739600632 1.1228054143068908 0.48133781968319966 0.10112389654999417 0.21305082877237858 39.35519879700558 0.03672368796557928 0.030462941168961564 189.89979672451904 -2.278524499853042 0.21228914034682766 SAAEMYGSVTEHPS(ph)PSPLLSSSFDLDYDFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V555;G3V575 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 SAAEMYGSVTEHPS(0.992)PS(0.008)PLLSSSFDLDYDFQR 199.76 7.1452e-26 205150000.0 62011.0 56659.0 48135.0 59386.0 73004.0 67168.0 63867.0 58503.0 63620.0 57475.0 True False 61677.139666069794 58544.860563911214 54911.98960307973 66904.26151101622 82300.626671391 62524.8342564648 60777.509214367026 62868.79093221463 47941.703464323866 53806.896293176884 1.1462683023010736 1.088054963157857 1.0205381351840392 1.2434142483609518 1.5295553607656671 1.162022687868607 1.1295486898781424 1.168415115223564 0.8909955185503468 1.0 15.715503470739428 1.2855754045267582 6.761563343043205 0.9459993768943289 1.1870034813993675 0.35250085203734893 0.13035126375472644 0.2104252356940521 22.54690604762619 0.09880432794908736 0.034812378789123376 19.300804179668237 -1.2855754045267582 0.24100410450503862 SAAEMYGSVTEHPSPS(ph)PLLSSSFDLDYDFQR ddPTM_BT-474_Trastuzumab_2h_R1 10 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V555;G3V575 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 SAAEMYGSVTEHPS(0.008)PS(0.992)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.017)PS(0.983)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.023)PS(0.977)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.001)PS(0.999)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.002)PS(0.998)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.361)PS(0.639)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.108)PS(0.892)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.107)PS(0.893)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.009)PS(0.991)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.229)PS(0.758)PLLS(0.004)S(0.006)S(0.002)FDLDYDFQR 339.26 3.010999999999999e-106 1784051000.0 572607.0 703718.0 666681.0 753856.0 857798.0 718877.0 589118.0 575979.4 664038.0 714027.0 True False 569524.1475346185 727140.8282234865 760543.8899048669 849294.0923054037 967033.4907329177 669182.7250444349 560620.1116906934 618961.9075921307 500394.73255332815 668457.1855507295 0.8519979436908859 1.0877896803882938 1.1377600635383534 1.2705287797986433 1.4466648150938741 1.0010853941125752 0.8386776652401587 0.9259559489695356 0.748581574661453 1.0 19.350475633601043 2.4838342234156037 21.273941079071093 0.8821019700784584 1.166402652353724 0.43222013157559946 0.1519132421961922 42.55474126875217 134864.4962680963 0.05387888614274558 0.04686556032641284 304.67317853509786 -2.4838342234156037 0.2843006822752657 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V555;G3V575 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 193.6 4.1531000000000005e-19 283580000.0 58384.0 88694.0 84995.0 103552.0 125923.0 115754.0 91120.0 86974.0 101548.0 104743.0 False True 58069.66703107224 91646.1261733448 96961.55721021624 116661.67258257436 141958.54764590404 107752.19843560674 86712.17748779696 93464.44152502315 76522.85607348576 98058.21206500602 0.592195858033552 0.9346093941891329 0.9888162874715402 1.1897185368343806 1.4476966758459253 1.098859505659498 0.88429286708096 0.9531526177844493 0.7803819227578435 1.0 16.581350836171364 -1.5091555502201097 4.087217123793916 1.0000059720147783 0.9993942289459907 0.0 0.2192177567267939 1.2700048489993498e-05 1.5248464189125957e-06 0.22594914400701535 0.05273667703778015 0.030963101025751366 1.5091555502201097 -0.0006117430687875292 SAALPIFSSFVSNWDEATKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAALPIFSSFVSNWDEATKR 20 1 O76021;J3QSV6;O76021-2;I3L3U9 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 0 ; 224.89 8.7781e-25 420270000.0 237805.0 228481.0 249340.0 249850.0 233239.0 284950.0 282600.0 276900.0 407700.0 319780.0 False True 236524.68430261922 236085.85196531867 284444.9046978688 281480.98438230203 262940.60413413774 265252.0772001498 268929.5583631629 297563.6840697093 307227.7979001079 299371.3666225684 0.7900711646909674 0.7886053186341072 0.950140649411144 0.9402401691180385 0.8783091285601784 0.8860302178951056 0.89831422890291 0.9939617386483788 1.0262430952103863 1.0 18.1915767158496 7.856599378606498 0.19549158984733933 1.0193465203966334 2.034050959684494e-12 0.6479350086671639 0.046627417559501214 34.30391365677397 0.42859315582548874 0.09761680198027314 10.529144155769998 71878561.76214789 -7.856599378606498 -1.0193465203945993 SAAMLGNSEDHTALSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAAMLGNSEDHTALSR 16 0 O60749;O60749-2 O60749 SNX2 Sorting nexin-2 0 ; 178.99 2.6997e-09 1397470000.0 759190.0 946610.0 909530.0 844010.0 877480.0 851690.0 954650.0 846120.0 1025370.0 927410.0 False True 755102.6053939385 978117.341612171 1037583.9182235189 950861.5794617054 989221.8767685649 792814.6749626079 908469.932382851 909261.7709103029 772681.3027540679 868221.8998043521 0.8697115398311143 1.126575293519529 1.1950676646803442 1.0951826712456523 1.1393652670952892 0.9131475203991782 1.046356850233297 1.047268873447213 0.8899583193284878 1.0 19.72770428765265 2.7511217145077818 24.89695340594821 0.9932167832200081 1.0941407185200303 0.23541496550230456 0.09301503345796208 1144.3144673821068 2268107.0388568076 0.028620920238540445 0.030170952835142727 563.7956419318264 -2.7511217145077818 0.1009239353000222 SAAPLIICPMSGIDGFS(ph)GHVGNHGHSMETSP ddPTM_BT-474_Trastuzumab_2h_R1 1 SAAPLIICPMSGIDGFSGHVGNHGHSMETSP 31 0 A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551;P14373 A0A140T9B9 TRIM27 Zinc finger protein RFP 1 SAAPLIICPMS(0.045)GIDGFS(0.239)GHVGNHGHS(0.239)MET(0.239)S(0.239)P 60.176 0.047947 86611000.0 17385.0 25050.0 21332.0 29847.0 29021.0 30356.0 26438.0 5710.7 29240.0 20579.0 True False 17291.401091655076 25883.774106955232 24335.360178932115 33625.62713971813 32716.652329056524 28257.561170337725 25159.0929370322 6136.861432347022 22034.193795926294 19265.630601431694 0.8975258297732592 1.3435207309036499 1.2631489039929829 1.7453686222562215 1.698187461697996 1.4667342977207198 1.3059054986324996 0.31853934912937504 1.1437047793436286 1.0 14.233741788524796 1.9151180681747684 8.16798953892337 0.7574780247383092 1.4194556140110943 0.4300789829802062 0.2982564577941401 0.26676006348499876 23.39498166217986 0.12807250341402368 0.08039955644765395 82.24662168824429 -1.9151180681747684 0.6619775892727852 SAAS(ph)PVVSSMPER ddPTM_BT-474_Trastuzumab_2h_R1 4 SAASPVVSSMPER 13 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;H7C1M2 P18583-7 SON Protein SON 1 SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER 278.54 2.7164e-32 3869280000.0 1429480.0 1542760.0 1423370.0 1510380.0 1461810.0 1599750.0 1628050.0 1473100.0 1895360.0 1644580.0 True False 1421783.8385101592 1594109.8339818867 1623768.1238461721 1701593.9531372508 1647962.83867331 1489163.0479064356 1549295.0017450368 1583030.2022502315 1428273.9245228046 1539621.4964042255 0.9234632290018844 1.0353907357781886 1.0546541001398528 1.10520277685867 1.0703688163110965 0.9672267186346545 1.0062830412302008 1.0281944009923132 0.9276786066306086 1.0 20.554144288830088 2.7367649041694886 24.992475933477728 0.992669937294222 1.0423603658139535 0.20124823384393387 0.05044021078851831 297.5319340252545 4141015.0674503865 0.016617832458464994 0.016405997821092762 545.4625069443504 -2.7367649041694886 0.04969042851973149 SAATLITHPFHVITLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAATLITHPFHVITLR 16 0 E9PIE4;Q9Y6C9 E9PIE4 MTCH2 Mitochondrial carrier homolog 2 0 144.29 7.693399999999998e-07 375030000.0 73152.0 79848.0 109600.0 85937.0 103170.0 153030.0 91665.0 39389.0 107870.0 93692.0 False True 72758.15775995131 82505.69241086466 125030.72733972249 96816.6153886808 116308.08796350085 142451.39629387207 87230.81375569483 42328.40719328928 81286.88388394564 87712.49634624324 0.8295073198320569 0.9406378320960697 1.42546082426119 1.1037950055200716 1.3260150241805582 1.6240718509657754 0.9945083926394368 0.48258126215218844 0.9267423374095679 1.0 16.420494776751323 1.9977819187391153 24.99963649420431 0.7438488401580695 1.215123034880611 0.3398297122678502 0.2505070627375808 83.13554109291901 937012.3800473607 0.09746855630238872 0.0708246767937 99.49056993412285 -1.9977819187391153 0.4712741947225415 SAATWDER ddPTM_BT-474_Trastuzumab_2h_R1 1 SAATWDER 8 0 Q01082;A0A087WUZ3;Q01082-2;Q01082-3 Q01082;Q01082-3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 97.798 0.020022 0.0 270410.0 354600.0 335040.0 325680.0 302640.0 330850.0 335620.0 281320.0 368070.0 306200.0 False True 268954.14260537515 366402.64663977333 382210.71978011535 366911.0546072777 341179.41011218267 307979.11823712767 319384.7784070939 302313.52691401495 277364.0803853142 286658.05384899117 0.9382403145283953 1.2781871701145047 1.333333268150423 1.2799607395666024 1.1901964920612795 1.0743780406719996 1.1141664227419295 1.0546137561977273 0.9675781882319868 1.0 18.128971287521036 2.228035281444757 1.0480084810572694 1.0022918125358622 1.2195101541504287 0.3854992561083459 0.10458984971415362 0.5487240097560317 1.149574707224241 0.07593657483271347 0.042474179552382585 169.05782661558527 -2.228035281444757 0.21721834161456655 SAAVETASLS(ph)PSLVPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAAVETASLSPSLVPAR 17 0 Q2KHT3;Q2KHT3-3 Q2KHT3 CLEC16A Protein CLEC16A 1 SAAVETASLS(0.811)PS(0.188)LVPAR;SAAVETAS(0.005)LS(0.986)PS(0.009)LVPAR 285.9 2.4459e-36 210460000.0 184380.0 189787.0 182537.0 195816.0 205208.0 195899.0 165010.0 166525.0 190045.0 164734.0 True False 183387.31856654366 196103.94556633572 208236.62295995373 220606.28552253332 231340.02243689136 182356.96322664348 157027.83590058572 178951.94109681612 143210.95622253124 154220.53508412713 1.1891238638648614 1.2715812810489941 1.3502522400558452 1.4304598632224486 1.500059783288235 1.1824428123477069 1.0182031583208242 1.1603638970594807 0.9286114598448891 1.0 17.234635353123906 2.4910481176995845 5.166383557740435 1.055800058632627 1.349201176615953 0.7089213389734741 0.09642875922572648 0.11143543274549801 8.908741401291357 0.034802869667084166 0.030912531803085584 309.77624971026495 -2.4910481176995845 0.293401117983326 SACGVCPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SACGVCPGR 9 0 P49207 P49207 RPL34 60S ribosomal protein L34 0 ;; 112.17 0.004666399999999999 173952000.0 160854.0 180019.0 166745.0 173553.0 152265.0 159643.0 184844.0 157108.0 178489.0 170286.0 False True 159987.97993655948 186010.82359121647 190221.24662647845 195524.7920052098 171655.04520463772 148607.2551691998 175902.3895473478 168832.19673825926 134502.7775800645 159418.20169082077 1.0035741103568823 1.166810449612084 1.1932216309615498 1.226489760462955 1.0767593874728894 0.9321849926359854 1.103402169148143 1.0590521969736943 0.8437102925105264 1.0 17.2824568339404 3.001454507335783 20.085525221791567 1.0063363115441226 1.1520983029638368 0.4285118847709638 0.08584150188685956 4.223808220427314 58294.80671283544 0.02532340054770845 0.02990501326521683 1003.3547415007945 -3.001454507335783 0.14576199141971413 SACMLS(ph)SPESSLTPPLSTNLHLESELDALASLENHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SACMLSSPESSLTPPLSTNLHLESELDALASLENHVK 37 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 S(0.009)ACMLS(0.503)S(0.441)PES(0.024)S(0.024)LTPPLSTNLHLESELDALASLENHVK 165.92 1.07e-17 145660000.0 33435.0 40794.0 38310.0 38078.0 36795.0 41163.0 38491.0 35415.0 55845.0 49556.0 True False 33254.98967497772 42151.80362950623 43703.71500351065 42898.67089577472 41480.6251489485 38317.49869727935 36629.043280100894 38057.84713372613 42082.74803466151 46393.29365297386 0.7168059660460437 0.9085753631722212 0.9420265638050728 0.9246739672475242 0.8941082187272028 0.8259275356455137 0.789533150073145 0.8203307878591755 0.9070868809066321 1.0 15.501628652297557 2.7520576037837046 23.77677806877843 0.8479867635708465 0.8852136754032208 0.0 0.08064737661381026 1505.4384626271299 2652029.3790699313 0.024386363013628676 0.025711818573839685 565.0119116741223 -2.7520576037837046 0.037226911832374365 SACMLSS(ph)PESSLTPPLSTNLHLESELDALASLENHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SACMLSSPESSLTPPLSTNLHLESELDALASLENHVK 37 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 S(0.007)ACMLS(0.131)S(0.628)PES(0.106)S(0.106)LT(0.023)PPLSTNLHLESELDALASLENHVK;S(0.001)ACMLS(0.116)S(0.677)PES(0.095)S(0.095)LT(0.016)PPLSTNLHLESELDALASLENHVK 111.23 2.2485e-05 217308000.0 19653.9 26768.0 22250.7 26108.6 22578.0 28869.0 29762.0 24361.9 38923.0 23887.4 True False 19548.085586153575 27658.95669840231 25383.405153448548 29413.946083024937 25453.174469709455 26873.35398031626 28322.29835811909 26179.908685221595 29330.94819147877 22362.88568096795 0.8741307300421464 1.2368241332084262 1.135068412707186 1.3153019025651878 1.1381882836065076 1.2016943771790136 1.2664867478271344 1.1706856198572864 1.3115904901504292 1.0 14.448818743446383 4.7420511411424044 24.640898360566222 1.2042416816583144 0.8741305767537223 0.5366551524157329 0.0898829045158552 186.91965655391348 1319462.809868662 0.018907226104809365 0.13817937467353789 55214.245399899104 -4.7420511411424044 -0.33011110490459206 SACMLSSPESSLT(ph)PPLSTNLHLESELDALASLENHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SACMLSSPESSLTPPLSTNLHLESELDALASLENHVK 37 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 SACMLSSPESS(0.003)LT(0.997)PPLSTNLHLESELDALASLENHVK;SACMLS(0.001)S(0.003)PES(0.026)S(0.083)LT(0.88)PPLS(0.002)T(0.002)NLHLES(0.002)ELDALAS(0.002)LENHVK;SACMLSSPESSLT(1)PPLSTNLHLESELDALASLENHVK;SACMLSSPESSLT(1)PPLSTNLHLESELDALASLENHVK 268.95 7.4138e-63 665352000.0 285894.9 290607.1 284089.7 285734.4 269748.4 366396.1 350628.7 290724.0 432405.9 355493.8 True False 284355.6736243092 300279.78164779796 324087.0604080618 321908.3457429917 304099.2598159704 341068.00001064606 333667.4502492925 312419.3011465596 325845.25988720666 332805.88133044523 0.8544190159367121 0.9022670526355516 0.9738020828011555 0.9672555799077562 0.9137436471984344 1.024825639039706 1.0025888031647847 0.9387433295878457 0.979085040758858 1.0 18.344321403382445 4.431333251796095 2.3971757196386605 0.972501963704197 0.8532984853297458 0.633368206171637 0.030340541567338997 0.21833421763792632 2.2328655972041767 0.00789560602713089 0.0408617891318513 26998.103119213036 -4.431333251796095 -0.11920347837445111 SADCSVPS(ph)PALDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SADCSVPSPALDK 13 0 O43439-2;O43439-5;O43439;O43439-4;Q68DC6 O43439-2 CBFA2T2;DKFZp313F2116 Protein CBFA2T2 1 SADCS(0.003)VPS(0.997)PALDK 94.547 0.00173 0.0 61969.0 49517.0 43371.0 38866.0 42856.0 55739.0 57780.0 47913.0 66967.0 52721.0 True False 61635.36578940313 51165.143411341385 49477.25981251002 43786.43161497923 48313.45757258696 51885.894125492676 54984.96065896519 51488.51135728423 50463.88016182608 49356.30064328105 1.248784146827942 1.036648669865548 1.0024507341039028 0.8871497872468678 0.9788711257306101 1.0512516831537695 1.1140413674105127 1.0432003753566048 1.0224404889367615 1.0 15.590946645114593 4.737323512341712 4.140684516107444 1.0165633939751022 1.2677147476416994 0.6219540361081415 0.05486218975733501 0.16592777834218092 6.311783097590671 0.015050357724429876 0.12401200925679312 54616.45555996938 -4.737323512341712 0.25115135366659724 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(ph)PHNIGTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGSPHNIGTSR 44 1 Q8IZD4;Q8IZD4-2;F5GZK9 Q8IZD4 DCP1B mRNA-decapping enzyme 1B 1 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(0.999)PHNIGTSR;SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(0.999)PHNIGTSR 250.85 1.6799999999999995e-56 1597140000.0 152378.0 217540.0 215402.0 245120.0 227190.0 245280.0 244950.0 179587.0 243320.0 240060.0 True False 151557.61377878737 224780.6873942928 245728.72929225257 276152.16686728003 256121.2998393695 228324.37092701427 233100.83270012998 192988.6938643084 183357.04632095713 224739.165274294 0.6743711697683463 1.0001847569378846 1.0933952210436522 1.2287674314810082 1.1396380311672583 1.0159527408066347 1.0372060980809934 0.8587230162075481 0.8158660111475006 1.0 17.777892039200644 1.7556279084307522 6.5112885239965905 0.8790976386519413 1.0405504512006971 0.15297440392838157 0.1426517073380235 0.2607095292150676 30.72389371434614 0.07253911453758573 0.0388331519185996 56.96759804188343 -1.7556279084307522 0.16145281254875576 SADTLWGIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SADTLWGIQK 10 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 ; 171.36 9.4115e-06 205310000.0 567350.0 648370.0 561960.0 450760.0 348770.0 654130.0 783000.0 500880.0 825650.0 677410.0 False True 564295.4506385105 669950.6035020583 641079.0833561163 507826.16978253645 393183.79217825166 608911.5327563917 745123.2986495282 538258.2090171037 622179.6206431784 634177.113840121 0.8898073398163846 1.0564093040906488 1.0108833468842828 0.8007639485876524 0.6199905099025304 0.960160055397239 1.174945109793693 0.8487506049497728 0.9810817941311467 1.0 19.2745262888935 1.0202495055835206 23.86568750868322 1.0000002070937555 0.9234915648467401 0.03780545056769857 0.14274932879966157 486.01242749124276 572801.6981808852 0.14389340565316258 0.035973351418033796 10.477303044486774 -1.0202495055835206 -0.07650864224701537 SAEAFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEAFGK 7 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 110.63 0.015726 596580000.0 650110.0 699400.0 635680.0 650610.0 656950.0 686140.0 723930.0 676140.0 897040.0 762860.0 False True 646609.879994012 722679.106203772 725178.2185703893 732977.1592914542 740608.6884522827 638708.756799826 688910.740218841 726597.0001693515 675976.5117201682 714173.6216826951 0.9053959154505128 1.0119095472905268 1.0154088537487087 1.0263290844661208 1.0370149022128579 0.8943326068175648 0.9646264147864616 1.0173954597446278 0.9465156527728802 1.0 19.445915322768016 SAEHYTETALDEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEHYTETALDEIR 14 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBM8 H3BLV9 SRPK1 SRSF protein kinase 1 0 ; 251.84 3.4475999999999994e-24 554950000.0 328740.0 470290.0 458340.0 501710.0 494880.0 496850.0 488810.0 442240.0 487250.0 495850.0 False True 326970.1003664475 485943.3183536913 522870.2880373032 565226.4345585145 557900.0346164324 462503.92895909585 465164.3928644651 475242.1944492176 367173.766315495 464204.4284814576 0.7043666115725309 1.0468304232756842 1.126379362100784 1.2176239602184067 1.2018412586917349 0.9963367442918962 1.0020679776497345 1.0237778127276114 0.7909742858693163 1.0 18.82440076040607 1.4019474623447468 5.80960506085405 0.8947071697253496 1.052739443765373 0.1375617791309287 0.1428846506870277 0.3819113715539631 19.77525143668078 0.0999084714582743 0.0366635717843203 25.23175519364121 -1.4019474623447468 0.1580322740400234 SAEPPRS(ph)PLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAEPPRSPLLK 11 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;Q9Y2H9;O15021-2;H7C1I9;O15021-3;O15021-6;O15021 Q6P0Q8;O15021-2 MAST2;MAST1;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4 1 SAEPPRS(1)PLLK 98.439 0.0033428000000000004 296320000.0 394480.0 319810.0 313270.0 294160.0 280510.0 404360.0 352440.0 363210.0 541320.0 402750.0 True False 392356.16351084807 330454.6825207728 357375.6930083467 331400.6258390954 316231.28578696976 376407.5449610547 335391.1307484544 390314.57454300905 407918.9393163757 377046.15018837724 1.0406051442636974 0.8764303318192568 0.9478301073483898 0.8789391581734046 0.8387071068859248 0.9983062942639688 0.8895227562485085 1.0351904517470945 1.0818806639785978 1.0 18.52438159361518 1.6594574264125044 5.494474097186773 1.046458864950692 0.9213907185596092 0.43211565470187885 0.06002171286641912 0.12270558663979514 8.026126060775981 0.03047270410263172 0.01485476386604407 45.651749591447654 -1.6594574264125044 -0.12506814639108288 SAEPPRS(ph)PLLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAEPPRSPLLKR 12 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;Q9Y2H9;O15021-2;H7C1I9;O15021-3;O15021-6;O15021 Q6P0Q8;O15021-2 MAST2;MAST1;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4 1 SAEPPRS(1)PLLKR 95.067 0.0032641 145930000.0 114900.0 115900.0 105090.0 107630.0 100860.0 145360.0 137160.0 130620.0 217170.0 150010.0 True False 114281.39116659013 119757.66143697055 119885.75854134506 121255.94696444742 113703.92315594369 135311.60534063424 130525.04679791721 140367.5276749206 163651.36342890942 140436.23336997756 0.8137600135252644 0.8527547240708916 0.8536668612117179 0.8634235200897199 0.8096480546896475 0.9635092176258918 0.9294257163252916 0.9995107694545184 1.1653072679453875 1.0 17.099555681868036 2.025204934115017 1.077483119602998 1.0730084900227825 0.8421535027524032 0.7550503935694354 0.05195680864524442 0.2395915157582378 0.5137262579464329 0.038664238836398274 0.01838132354631935 105.97536819090949 -2.025204934115017 -0.23085498727037934 SAEPS(ph)PTVMSTSLGSNLSELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEPSPTVMSTSLGSNLSELDR 22 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 S(0.004)AEPS(0.794)PT(0.202)VMSTSLGSNLSELDR;S(0.009)AEPS(0.989)PT(0.002)VMSTSLGSNLSELDR 153.04 3.859e-08 134632000.0 54577.0 66688.0 58053.0 67071.0 55184.0 69555.0 61610.0 55833.0 65174.0 67123.0 True False 54283.16349607475 68907.66976625267 66226.35779427832 75562.18172305549 62211.35529880619 64746.82656485833 58629.68892694437 59999.541974229345 49112.740986857025 62839.15267310856 0.8638430212205062 1.0965722298120846 1.053902781579346 1.2024697741570858 0.9900094551311315 1.0303580460684052 0.9330120861421864 0.9548114419420808 0.7815627502544982 1.0 15.939376106926531 2.1932811981113702 1.5519710797363704 0.903127349111953 1.054228205635357 0.28134798818183837 0.0952169713818428 0.47844823387402646 2.2479299290202106 0.0537473779161191 0.0309772674044276 156.05626128832668 -2.1932811981113702 0.15110085652340388 SAEPSANTTLVS(ph)ETEEEGSVPAFGAAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEPSANTTLVSETEEEGSVPAFGAAAK 28 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 SAEPSANTTLVS(0.767)ET(0.233)EEEGSVPAFGAAAK;SAEPSANT(0.013)T(0.009)LVS(0.943)ET(0.035)EEEGSVPAFGAAAK 169.3 2.8764e-12 395930000.0 835920.0 676330.0 636750.0 565340.0 664980.0 822670.0 755590.0 822920.0 877700.0 817440.0 True False 831419.4995994422 698841.2351998814 726398.8652697831 636911.9860343834 749661.2613547437 765800.7592568769 719039.225065896 884330.4691030898 661402.5955774452 765270.279354406 1.086439029490131 0.9131953168094216 0.9492056399767471 0.832270641127854 0.9796032611996505 1.0006931928715674 0.9395885930294964 1.1555792678230294 0.8642732031033725 1.0 19.545609845533583 2.5632588531734988 1.88315265388926 1.0171121427212098 0.9429660649893802 0.018015628359969837 0.09115679955515826 0.7844281742979701 5.577990503182333 0.03670118949686481 0.03162652582208827 365.8127625623351 -2.5632588531734988 -0.07414607773182957 SAEPSPTVMS(ph)TSLGSNLSELDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAEPSPTVMSTSLGSNLSELDR 22 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 SAEPSPTVMS(0.557)T(0.066)S(0.377)LGSNLSELDR 285.34 5.5489999999999995e-46 275150000.0 247510.0 235310.0 231300.0 220090.0 233090.0 277980.0 236440.0 265660.0 338170.0 264480.0 True False 246177.4336609462 243142.15110210143 263865.0295043593 247953.3714336639 262772.62986732967 258763.89689453426 225002.49391148705 285484.8981941459 254832.53474584108 247600.65996728025 0.9942519284620561 0.9819931462793031 1.065687908664009 1.0014245174727332 1.061275967124055 1.0450856509378013 0.9087313981360975 1.153005400841306 1.0292078170531391 1.0 17.9176556344262 4.254484689509938 24.81084912741967 1.038221757815631 0.988122500561993 0.08094014385796955 0.05852125240811592 508.3647496569326 792052.6583366946 0.014006416204832967 0.038099294787723295 17967.377373926836 -4.254484689509938 -0.05009925725363795 SAEPSPTVMST(ph)SLGSNLSELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEPSPTVMSTSLGSNLSELDR 22 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 SAEPSPTVMS(0.251)T(0.566)S(0.183)LGSNLSELDR;SAEPSPTVMS(0.148)T(0.563)S(0.289)LGSNLSELDR 238.79 1.6172e-29 198341000.0 226426.0 197588.0 184300.0 196978.0 215454.0 249757.0 219828.0 228862.0 337132.0 224587.0 True False 225206.94757429365 204164.5971355319 210247.83803568303 221915.39460339086 242890.7898040915 232491.88645473841 209194.07981548947 245940.84457768826 254050.33593735372 210253.66538139584 1.0711201974328146 0.9710394192899395 0.9999722842134418 1.0554650459997492 1.1552273743408592 1.1057685298042386 0.994960441883454 1.1697339217918348 1.2083039573959942 1.0 17.681771425839795 3.467359377345497 5.149742453077656 1.1102535326101572 1.0118043118637707 0.269212031187701 0.0678302550512104 0.21830873723755606 17.233483808158308 0.018801640870962765 0.026923056037048927 2933.3195541223286 -3.467359377345497 -0.09844922074638651 SAEPSPTVMSTS(ph)LGSNLSELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAEPSPTVMSTSLGSNLSELDR 22 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 SAEPSPTVMS(0.011)T(0.004)S(0.984)LGSNLSELDR;SAEPSPTVMS(0.025)T(0.181)S(0.793)LGSNLSELDR 293.01 2.0206e-55 561770000.0 787880.0 694600.0 673990.0 755100.0 748010.0 802950.0 777550.0 748810.0 1087270.0 820280.0 True False 783638.1416216965 717719.341105433 768881.9335739005 850695.5825778523 843264.6396973752 747443.9564409893 739936.9359705502 804690.0045801343 819326.8771715724 767929.0281229592 1.020456465276661 0.9346167612126172 1.0012408769769656 1.107778911102239 1.0981023099993472 0.9733242644414142 0.9635485948215425 1.047870278516531 1.0669304677467975 1.0 19.550613457900987 3.9947435921191383 24.504569237193657 1.0363610517387618 0.9751346520909367 0.19554847247854057 0.049267258756833604 288.1493699600609 1343341.380414087 0.01307420948740979 0.027020177443356545 9879.696242143966 -3.9947435921191383 -0.06122639964782506 SAEVGPS(ph)SEPEVQTLPYLPHYIPGVDPETSHGGHPHGNMPGLDRPLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAEVGPSSEPEVQTLPYLPHYIPGVDPETSHGGHPHGNMPGLDRPLSR 48 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 S(0.004)AEVGPS(0.309)S(0.291)EPEVQT(0.292)LPY(0.069)LPHY(0.022)IPGVDPET(0.002)S(0.002)HGGHPHGNMPGLDRPLS(0.008)R 64.90899999999999 0.00024553 402150000.0 31426.0 17912.0 19253.0 25578.0 22980.0 25269.0 27664.0 7500.0 32311.0 11896.0 True False 31256.805907756847 18508.190091967354 21963.655049924044 28816.17217742857 25906.366786868755 23522.213506827782 26325.786633257398 8059.688084228318 24348.38699521799 11136.787095322006 2.806626870050001 1.6618967331917207 1.972171584311767 2.5874762560139777 2.326197543791664 2.1121184508149806 2.363858302033583 0.7236995746837775 2.1863026370905034 1.0 13.443045462298942 1.7567024473247739 24.99999999965606 1.2997434691059917 2.2365738875751293 0.4785855485413776 0.4577814264616457 6.025068126194687 8311.224099544821 0.19896879417173288 0.11033953738925285 57.108722769658385 -1.7567024473247739 0.9368304184691376 SAFS(ph)PYQTPVAHFPPPPEEPTATAAFGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SAFSPYQTPVAHFPPPPEEPTATAAFGAR 29 0 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 S(0.037)AFS(0.962)PYQTPVAHFPPPPEEPTATAAFGAR;S(0.048)AFS(0.947)PYQT(0.004)PVAHFPPPPEEPTATAAFGAR;S(0.021)AFS(0.978)PYQT(0.001)PVAHFPPPPEEPTATAAFGAR 166.88 2.6626e-12 555220000.0 134888.0 169771.0 139268.0 113461.0 150550.0 154491.0 142467.0 137953.0 161136.0 149507.0 True False 134161.77799546556 175421.7251062635 158875.7238608435 127825.15096658157 169721.650120239 143811.40080269624 135575.3269332087 148247.7533711401 121426.19191177769 139965.3352606176 0.9585357527680284 1.253322651495283 1.1351076576569081 0.9132629213409819 1.2125977464649706 1.027478700600525 0.9686350315295238 1.059174781349257 0.8675447508890701 1.0 17.094710038463674 2.18510873183453 1.043009371053335 0.9634564898190525 1.0992679827392853 0.20077461264830498 0.10727819118065539 0.866011479507257 1.780665978920135 0.07604268414830208 0.04102491596321711 153.14708393146717 -2.18510873183453 0.13581149292023276 SAGGRPGS(ph)GPQLGTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SAGGRPGSGPQLGTGR 16 1 O14908;O14908-2;K7EM11;K7ESN1 O14908 GIPC1 PDZ domain-containing protein GIPC1 1 SAGGRPGS(1)GPQLGTGR;S(0.015)AGGRPGS(0.985)GPQLGTGR;SAGGRPGS(1)GPQLGTGR 189.15 6.445399999999999e-10 916820000.0 149268.7 197892.0 147570.0 179078.0 190492.0 221074.0 231496.0 184943.0 271146.0 200685.0 True False 148465.05390451173 204478.7155917596 168346.57329856616 201749.25643871905 214750.02706545725 205791.67473221937 220297.65407940117 198744.38578152514 204325.7014702539 187877.11148492753 0.7902242733619117 1.0883641651482594 0.8960462079068732 1.0738362690598657 1.1430345366081787 1.0953525584127848 1.172562492249486 1.057842459950048 1.0875497278796835 1.0 17.51942979261287 5.678697246255592 0.7356660974361199 1.0945530453426058 1.1311712042340575e-15 0.5441054130122858 0.07458571110861886 7.203736281737332 1.0603648659281908 0.025871660054694778 8.982960976865382 477196.4962427578 -5.678697246255592 -1.0945530453426047 SAGGRPGSGPQLGTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAGGRPGSGPQLGTGR 16 1 O14908;O14908-2;K7EM11;K7ESN1 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 ; 143.28 1.3014e-06 148349000.0 72760.0 89107.0 77467.0 81081.0 74473.0 74292.0 91248.0 75541.0 106068.0 82561.0 False True 72368.26824439589 92072.87262868098 88373.68024476533 91345.8462865777 83956.69511394601 69156.36890455704 86833.98563878944 81178.25300942562 79928.96263838258 77291.88629597178 0.9362983841185865 1.1912359374450865 1.1433759024376546 1.1818296934401298 1.086229087390271 0.8947429312274561 1.1234553819307547 1.0502816906107308 1.0341184109844688 1.0 16.2380293549552 2.9923715720703976 24.88879815804608 1.0299827285514775 1.122555656804962 0.2079223792428435 0.08468217172229074 529.3540351399389 1727100.7788281995 0.024348056076966433 0.02798526493382294 982.5882627302474 -2.9923715720703976 0.0925729282534844 SAGGSSPEGGEDS(ph)DREDGNYCPPVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3;B7Z7F3;K7EID7;K7ENB9 Q9H6Z4 RANBP3 Ran-binding protein 3 1 SAGGSSPEGGEDS(1)DREDGNYCPPVKR 155.5 2.3711000000000003e-08 481680000.0 158840.0 158620.0 120210.0 140540.0 108950.0 157920.0 146030.0 152750.0 198410.0 151680.0 True False 157984.82308878322 163899.57081218497 137134.52311594933 158332.34959010905 122824.13670275678 147003.36210369412 138965.97101122665 164148.98064878336 149514.5140577886 141999.65254021852 1.1125718990336066 1.154225153936653 0.9657384413465995 1.1150192747497367 0.8649608256468749 1.0352374775146609 0.9786359932948946 1.155981565534405 1.0529216894769629 1.0 17.115527874032143 4.253710303935615 24.999124603708434 1.0292870394712055 1.1333985769110397 0.24880387697784057 0.07702455818513015 360.22627512607517 594413.658462212 0.01907625191432562 0.05181654916096197 17935.36849254591 -4.253710303935615 0.10411153743983426 SAHATAPVNIAGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SAHATAPVNIAGSR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ;; 182.57 1.5072e-06 1109720000.0 117086.0 193154.0 153120.0 216987.0 194037.0 172066.0 176050.0 136918.0 178220.0 185887.0 False True 116455.62198547767 199583.01412594147 174677.96505710133 244457.53195182153 218746.46180259588 160171.48241979617 167533.78892369015 147135.51641551655 134300.06902564902 174023.53251413236 0.6691946790358388 1.14687370864474 1.003760597969219 1.4047383616464013 1.2569935723194885 0.9204012819748314 0.9627076666202303 0.8454920681693883 0.7717351043586165 1.0 17.40892288364792 2.5868666185362343 6.825400237980879 0.8883061813643179 1.110788714712652 0.21476420165219723 0.1868355935615219 0.3740799886330865 20.478589073832083 0.06222730974380717 0.05849099230059718 386.24833340958196 -2.5868666185362343 0.22248253334833412 SAIDLT(ph)PIVVEDKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAIDLTPIVVEDKEEK 16 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38;A0A2R8Y7X1 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 S(0.001)AIDLT(0.999)PIVVEDKEEK 74.77600000000002 0.050669 96596000.0 38227.0 33004.0 27135.0 32916.0 26818.0 34877.0 39602.0 38303.0 53193.0 29628.0 True False 38021.19007941895 34102.51818866068 30955.3721383519 37083.16222504651 30233.11333726051 32466.035081626986 37686.2999656687 41161.36435869301 40084.29789968216 27737.11567419303 1.3707694241183972 1.2294904268070708 1.1160270772909953 1.336950916621412 1.089987642997422 1.170490669000375 1.3586957060835463 1.4839814219396315 1.4451501868659367 1.0 14.759530152110461 2.1829947266195533 7.14218171254834 1.3764717377721065 1.2143782110083414 0.056797957873380045 0.15000196143376537 0.3381710814730732 35.283014053488856 0.05363986609505099 0.0397223072066942 152.4034248240502 -2.1829947266195533 -0.1620935267637651 SAIVHLINYQDDAELATR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAIVHLINYQDDAELATR 18 0 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 JUP Junction plakoglobin 0 ; 204.78 1.0349000000000001e-15 1017940000.0 259219.0 311613.0 370117.0 314032.0 373867.0 401696.0 334525.0 332021.0 435700.0 357145.0 False True 257823.39370593822 321984.8503309637 422226.25648536487 353788.41900157323 421476.74636667786 373927.70101067313 318342.7477403999 356798.09298847616 328327.5730808852 334351.7003327819 0.7711143489006497 0.9630124506933585 1.2628207245996386 1.0581325551790102 1.2605790428078576 1.1183663807855653 0.9521194222238194 1.067134076582692 0.9819826630284793 1.0 18.35100692854473 4.567501054818132 3.9168575544324096 1.0892314471475686 0.7831701019559797 0.48003766242023393 0.1010294650264524 0.19914623681611504 5.199942204468244 0.024867060632503733 0.12268940863561108 36940.354156765825 -4.567501054818132 -0.3060613451915889 SAKPGDDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SAKPGDDVR 9 1 P55809;E9PDW2 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial 0 ;; 101.11 0.003838 466930000.0 1416750.0 1461010.0 1460910.0 1225890.0 1614590.0 2590900.0 1495690.0 1309000.0 2131200.0 1691910.0 False True 1409122.375415722 1509638.8346508062 1666593.429542644 1381087.5483066677 1820198.4660753042 2411797.1813225714 1423337.7606093397 1406684.226967315 1605994.3166168996 1583930.8552829723 0.8896362936019574 0.9530964243897542 1.052188246717944 0.8719367664947304 1.1491653565585236 1.5226656979869864 0.898611044706909 0.8880969912768119 1.0139295609150727 1.0 20.595077926889633 4.470651217289537 1.166340487771402 1.0506340602459634 0.8571033277552882 0.08423212983807415 0.17805634773164924 3.2580132253139586 5.19444539267057 0.058211737816370304 0.6878792707147088 29556.378348719485 -4.470651217289537 -0.1935307324906752 SAKS(ph)EESLTSLHAVDGDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAKSEESLTSLHAVDGDSK 19 1 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.042)AKS(0.863)EES(0.094)LTS(0.001)LHAVDGDSK;S(0.002)AKS(0.782)EES(0.191)LT(0.024)S(0.001)LHAVDGDSK 258.83 2.9189e-31 1607840000.0 1681460.0 1290480.0 1375590.0 1367830.0 1256790.0 1952940.0 1881750.0 1799240.0 2863200.0 1900660.0 True False 1672407.2061877693 1333432.8466883656 1569261.1151573788 1540997.13775323 1416834.7569220553 1817937.854526266 1790722.5635169232 1933508.4251555966 2157602.724914371 1779358.2515631076 0.9398934726711806 0.7493897564006511 0.8819253311011622 0.8660409652747078 0.7962616610103179 1.0216817512320904 1.0063867475500408 1.086632454963509 1.2125735348792117 1.0 20.762925577804218 2.4227388100859257 1.5565761161828644 1.0991501710880143 0.8426935001439143 0.6843039456799114 0.0740573418794876 0.20640666341668445 1.0132399196379813 0.034467858183937425 0.025032337980185723 264.69077777149596 -2.4227388100859257 -0.25645667094409996 SAKSEESLT(ph)SLHAVDGDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAKSEESLTSLHAVDGDSK 19 1 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.268)AKS(0.179)EES(0.189)LT(0.356)S(0.007)LHAVDGDSK 122.73 5.2728e-05 191750000.0 172140.0 133670.0 136830.0 132550.0 138070.0 185330.0 176430.0 171750.0 275360.0 186460.0 True False 171213.2173665518 138119.1251447788 156094.4746523193 149330.81640934222 155652.39609499442 172518.5733198935 167895.40687194932 184566.85712882873 207501.2176349611 174559.96316356258 0.980827529197661 0.7912417179841019 0.8942169316686832 0.8554700270497843 0.8916844004438075 0.9883055094268306 0.9618208197869028 1.0573263982411 1.1887102510472725 1.0 17.413363176766932 2.1662023720916688 1.1351278868517585 1.0928775474144492 0.8752083652861967 0.6166400407467105 0.06582065255667945 0.29867116370137153 0.7279771499478657 0.043998031167168446 0.02333818247097736 146.62309145534928 -2.1662023720916688 -0.21766918212825248 SALIAALCDKDVETLEAPEGRPDSGVPSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SALIAALCDKDVETLEAPEGRPDSGVPSLR 30 2 Q8WZA9;M0QZP8 Q8WZA9 IRGQ Immunity-related GTPase family Q protein 0 216.71 9.553499999999999e-35 455590000.0 250610.0 217790.0 242500.0 222570.0 181000.0 267920.0 262580.0 250390.0 325930.0 299470.0 False True 249260.74360538824 225039.00849316487 276641.8921522143 250747.33917938385 204049.27712894898 249399.3210158416 249878.00224698975 269075.373254657 245608.91873824425 280357.5682108341 0.8890815582261704 0.8026856914521792 0.9867466532744872 0.8943840566872701 0.7278179734227831 0.8895758463288163 0.891283241760311 0.9597578370073011 0.8760559606278999 1.0 18.096908490104653 1.2129700326186224 0.7450987310039481 0.9897173234659908 0.8645529863390543 0.2309715187714082 0.06817571430494967 0.9219604292132674 1.1800957378150732 0.06624510384639168 0.026522925397351405 16.32939267203745 -1.2129700326186224 -0.12516433712693653 SALLDHIWVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SALLDHIWVTR 11 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30 E9PP16 PPFIBP2 Liprin-beta-2 0 ; 144.1 3.6871e-05 757690000.0 669130.0 825100.0 780110.0 759150.0 721870.0 785640.0 790290.0 697180.0 871310.0 769910.0 False True 665527.478427332 852562.9547165174 889942.7071623245 855258.3121625975 813795.8656412945 731330.5559976337 752060.6534990235 749207.1118083076 656587.3254558321 720773.6846468861 0.9233515215714074 1.182844175469858 1.2347047708856296 1.1865837091175113 1.1290587919285384 1.0146465826591873 1.0434074793774766 1.0394484812182778 0.9109479708287359 1.0 19.459186813942207 2.756339626974606 4.181570326706083 1.0094671460521332 1.1444963031055422 0.3626869864217769 0.0849474704140497 0.2417843418125306 10.235091211029461 0.027707896439886887 0.028163418649534176 570.6103265389801 -2.756339626974606 0.135029157053409 SALS(ph)PSKS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 2 SALS(0.771)PS(0.231)KS(0.998)PAK 118.51 0.015298 0.0 211320.0 128170.0 102540.0 101200.0 104140.0 175410.0 182330.0 159060.0 319270.0 180970.0 True False 210182.2765998593 132436.0609695989 116976.74070634235 114011.90962373029 117401.61171386039 163284.3195707255 173510.00133176055 170929.86489031443 240590.18649881642 169420.33966378815 1.2405964774770404 0.7817010710308814 0.6904527575524919 0.6729529042969989 0.692960549759503 0.9637822701498563 1.024139142183803 1.0089099409759295 1.4200785276210852 1.0 17.370247561447982 2.044419048850097 1.405629509030293 1.1666756311248863 0.8056999943350639 0.3589543434917092 0.18872143027323168 0.45589661156127914 1.6861272674868144 0.12861312964465027 0.06310834668370008 110.7692075749083 -2.044419048850097 -0.36097563678982236 SALS(ph)PSKSPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 1 SALS(0.998)PS(0.002)KSPAK;SALS(0.99)PS(0.01)KSPAK 127.32 0.00017505 280170000.0 606960.0 502190.0 448660.0 407420.0 417810.0 687930.0 643340.0 573130.0 1121610.0 668670.0 True False 603692.1947995954 518905.0905697342 511827.4281773709 458999.3302262862 471015.6269461114 640375.0183130327 612219.1864025387 615899.8708951708 845204.2443039975 625994.9081228114 0.9643723726282443 0.8289286124160172 0.8176223504951539 0.7332317312335662 0.752427249541948 1.0229716088799243 0.9779938757623727 0.9838736112759882 1.3501775067764294 1.0 19.255791396681214 2.0800207303027047 1.1587048860973668 1.1308519841844382 0.8220834010180679 0.5305194116100752 0.11624816332292873 0.38751003021740266 0.9701500881268144 0.08481325748640613 0.04192331328523491 120.2321824019177 -2.0800207303027047 -0.30876858316637035 SALSGHLETVILGLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SALSGHLETVILGLLK 16 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YNP5;H0YKS4;H0YMM1;H0YMW4;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 117.08 0.00037777 637580000.0 691540.0 999100.0 1022710.0 860800.0 754330.0 1201970.0 1016940.0 998120.0 1542420.0 1064270.0 False True 687816.8254773178 1032354.4395312961 1166698.6784453236 969777.1917401886 850389.4542358017 1118880.643033036 967746.7271119419 1072604.7827506622 1162311.2583691045 996347.3774326124 0.6903383709903307 1.0361390644610986 1.1709758111188815 0.9733324076579699 0.8535069931403694 1.122982474160937 0.9712944993197367 1.0765369659671808 1.1665723067030576 1.0 19.926289301393115 4.73800685360528 7.886492072256519 1.040863733017237 0.6873360237213257 0.5604884700400985 0.09323276942291175 0.06846430197842558 50.30662409949765 0.02218821488529314 0.13050261436889915 54702.45954261123 -4.73800685360528 -0.35352770929591126 SALSPSKS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 1 SALSPS(0.004)KS(0.996)PAK;SALSPS(0.001)KS(0.999)PAK 114.64 0.00082038 403380000.0 1223670.0 964530.0 949150.0 800010.0 630460.0 992820.0 1145240.0 845370.0 1967250.0 953880.0 True False 1217081.8966825188 996633.7979793019 1082782.0698403057 901291.183973127 710745.3439708136 924188.6902468934 1089840.3659583463 908455.8021018793 1482447.5972994524 893002.5617422455 1.3629097483303916 1.1160480839325615 1.2125184363724568 1.0092817451886258 0.7959051568498878 1.0349227760823037 1.2204224407061843 1.0173048107829439 1.6600709346311409 1.0 19.768304788425564 -0.4420856292515727 7.761195618186228 1.0000013809571313 1.1341867856964918 0.03356992185310126 0.22278246096979332 0.0 0.0 0.20925570429044923 0.04932204250191454 0.361338610973694 0.4420856292515727 0.13418540473936047 SALSS(ph)SLRDLSEAGVHH ddPTM_BT-474_Trastuzumab_2h_R1 1 SALSSSLRDLSEAGVHH 17 1 A0A0C4DGT3 A0A0C4DGT3 IQSEC1 1 SALS(0.003)S(0.776)S(0.222)LRDLSEAGVHH 170.38 1.1212e-09 245250000.0 117490.0 151360.0 150460.0 181780.0 148630.0 157070.0 172720.0 53611.0 180930.0 151920.0 True False 116857.44689436627 156397.92610094787 171643.46017823555 204793.32936167647 167557.1495009706 146212.1206030093 164364.87374552558 57611.72505114193 136342.22583778857 142224.33553474428 0.8216417145138915 1.0996565778487402 1.2068501465159203 1.4399317007998753 1.1781187014935128 1.0280386971278261 1.155673346108708 0.40507642264264854 0.9586420307408028 1.0 17.117808815283382 1.7721466504566987 24.99999999944249 0.7276729338789193 1.1439358885320718 0.34922852251154535 0.21064700400606462 29.66857517729537 22094.490599956425 0.09674026604218426 0.05367063007190039 59.17614235723268 -1.7721466504566987 0.41626295465315255 SALSSS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 4 SALSSSLR 8 0 A0A0C4DGT3;A0A3B3IU98;Q6DN90-2;A0A3B3IRZ4;Q6DN90-3;A0A2R8Y7T6;Q6DN90 A0A0C4DGT3;A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 SALSS(0.003)S(0.997)LR;SALSS(0.003)S(0.997)LR;SALS(0.023)S(0.107)S(0.869)LR;S(0.001)ALS(0.021)S(0.107)S(0.871)LR 118.04 0.0020592 936140000.0 2365760.0 2142940.0 2078550.0 2161060.0 2054910.0 2290150.0 2066730.0 2022410.0 2433990.0 2157700.0 True False 2353023.0110206483 2214266.4624654143 2371191.7729195263 2434649.9744215254 2316590.6080941884 2131837.3209332232 1966754.3742246968 2173332.5037898934 1834165.7782950257 2019993.7387000897 1.1648664874252879 1.0961749138343089 1.1738609518886134 1.2052760005029897 1.146830588487351 1.0553682816388863 0.9736437972774838 1.0759105150437152 0.9080056750449887 1.0 20.945919390439695 2.6224384231428206 2.9208007062552444 1.0037492714060925 1.1586815549282032 0.7402616574754906 0.046807353869184 0.14775160386884617 2.432262024390581 0.01643421396770167 0.015313192847104489 419.2165534518789 -2.6224384231428206 0.15493228352211075 SALSSS(ph)LRDLSEAGVHH ddPTM_BT-474_Trastuzumab_2h_R1 1 SALSSSLRDLSEAGVHH 17 1 A0A0C4DGT3 A0A0C4DGT3 IQSEC1 1 SALS(0.001)S(0.124)S(0.875)LRDLSEAGVHH 186.6 3.1059e-10 223820000.0 65401.0 99625.0 108340.0 129690.0 105150.0 96026.0 89574.0 43116.0 100370.0 91078.0 True False 65048.888282734224 102940.95790041577 123593.33029183876 146108.7407025849 118540.22922712135 89387.94864088987 85240.96341409045 46333.53485861179 75635.15838909446 85265.3240642012 0.7628996781124664 1.2073015499584048 1.4495145787375205 1.7135774983106988 1.390251318787759 1.0483505413476704 0.99971429593005 0.5434041958689395 0.8870564818606023 1.0 16.379671521189678 2.327282673730958 2.175265526523358 0.7728940115688766 1.323751609511089 0.39795358829071403 0.25568799281877413 0.2860945090786891 2.775212172097439 0.11822283750437741 0.08636130282367335 212.4626889881887 -2.327282673730958 0.5508575979422125 SAMDSPVPASMFAPEPS(ph)SPGAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR 187.73 2.4550999999999998e-17 500698000.0 422380.0 483972.0 462074.0 472820.0 429685.0 465018.0 444504.0 426018.0 498200.0 480593.0 True False 420105.95301082946 500080.715452748 527130.0027807924 532678.9635206736 484402.83780747146 432872.4001946273 423001.64334982086 457809.62643557135 375425.2855379775 449921.1432836318 0.9337324090723899 1.111485252288967 1.171605314952909 1.1839385000514877 1.076639417903733 0.9621072640316951 0.9401684043178188 1.0175330349989056 0.8344246344993574 1.0 18.7793126399617 2.7871014780410053 3.9692049179835034 0.9556020603549186 1.1082113968578877 0.4605869020612723 0.07819315616696984 0.20951725259995196 7.000019152906102 0.02528408862514792 0.026254299129957043 612.493491352337 -2.7871014780410053 0.15260933650296915 SAMDSPVPASMFAPEPSS(ph)PGAAR ddPTM_BT-474_Trastuzumab_2h_R1 6 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 SAMDSPVPASMFAPEPS(0.004)S(0.996)PGAAR;SAMDSPVPASMFAPEPS(0.08)S(0.92)PGAAR;SAMDSPVPASMFAPEPS(0.209)S(0.791)PGAAR;SAMDSPVPASMFAPEPS(0.372)S(0.628)PGAAR;SAMDSPVPASMFAPEPS(0.191)S(0.809)PGAAR;SAMDSPVPASMFAPEPS(0.118)S(0.882)PGAAR 359.02 4.916699999999996e-102 3102950000.0 1271212.0 1542210.0 1394479.0 1475687.0 1361419.0 1546822.0 1495772.0 1261769.0 1547622.0 1487248.0 True False 1264367.9358369298 1593541.5275643668 1590809.5221712496 1662508.8228944025 1534787.6398873853 1439893.8359673275 1423415.79395607 1355928.6099131592 1166231.2951723326 1392330.5593429285 0.9080946527767177 1.144513791549899 1.1425516099581896 1.1940474995240908 1.1023155597559287 1.0341609083455334 1.0223260449212659 0.9738553828431747 0.8376109303545725 1.0 20.40907033777321 2.034736489284541 1.3602348839045961 0.9253550809232801 1.1054791353210507 0.4147242056903947 0.08152954886820696 0.40239006138584044 1.389977886223673 0.05622375017393546 0.027206044730364063 108.32694345152241 -2.034736489284541 0.18012405439777057 SAMPFTAS(ph)PASSTTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 SAMPFT(0.002)AS(0.85)PAS(0.136)S(0.012)T(0.001)TAR;SAMPFT(0.001)AS(0.998)PASSTTAR 254.72 1.4412e-26 727520000.0 549010.0 543770.0 505400.0 534130.0 549950.0 684030.0 668790.0 592490.0 826040.0 704970.0 True False 546054.1911607456 561869.0557340938 576555.9269844496 601750.8032344176 619982.8726909697 636744.616133421 636438.0726740975 636704.6124032589 622473.5103689099 659978.2110448184 0.8273821499292855 0.8513448570439818 0.8735984269415469 0.9117737421691234 0.9393990018389673 0.9647964212718234 0.9643319461509884 0.9647358075583816 0.943172819877592 1.0 19.332058869610197 3.7517752133543323 0.8312441051692491 0.9686494353379789 0.8180393296605187 0.9408862473748166 0.013010396822972621 0.17542999242631774 0.21393663114052713 0.005213020379516186 0.018865493116488326 5646.446445293591 -3.7517752133543323 -0.15061010567746014 SAMQSVVDDWIESYKHDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAMQSVVDDWIESYKHDR 18 1 Q8N3U4;Q8N3U4-2;B1AMT4;B1AMT1;B1AMT2;B1AMT3;B1AMT0 Q8N3U4 STAG2 Cohesin subunit SA-2 0 ; 175.21 2.3497e-12 247490000.0 359660.0 411060.0 377420.0 384960.0 397420.0 460050.0 485720.0 429560.0 579330.0 481660.0 False True 357723.6305219823 424741.88360898296 430557.45540655166 433695.89652916155 448029.0813071103 428247.8263412131 462223.86796941055 461615.94846148277 436561.8841242804 450920.0464301269 0.7933194218221877 0.9419450010519761 0.9548421251510482 0.961802208534913 0.9935887411839328 0.9497200883650955 1.025068349985268 1.0237201741551167 0.9681580749857583 1.0 18.782512123339853 5.75559014642061 0.8189268595209992 0.9956661535000632 1.819799468216769e-19 0.8533921716061055 0.024009023501981346 3.991102275859612 0.5881429431590289 0.008401834962294056 5.316041871153017 569626.4491080936 -5.75559014642061 -0.9956661535000632 SANGGS(ph)ESDGEENIGWSTVNLDEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SANGGSESDGEENIGWSTVNLDEEK 25 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 S(0.096)ANGGS(0.496)ES(0.408)DGEENIGWSTVNLDEEK 61.37 0.043669 36406000.0 72701.0 60413.0 54458.0 55320.0 48586.0 70595.0 72465.0 63516.0 93426.0 66993.0 True False 72309.58589384047 62423.81018457029 62125.21304257848 62323.50632791261 54773.13910821608 65714.93381275513 68959.59110681746 68255.88644771284 70402.41414426154 62717.449384407024 1.1529420696087533 0.9953180621546491 0.9905570722718869 0.9937187647080502 0.8733317385485692 1.0477934682894383 1.0995279907534374 1.08830775354654 1.122533120132994 1.0 15.936579268159281 2.4833591911246073 24.444204750167284 1.084310109866768 0.9959161130568829 0.20872696938370117 0.06966688124261264 291.53149539270294 1142416.276186199 0.023585999611535843 0.020393742556800036 304.3401085097997 -2.4833591911246073 -0.08839399680988513 SANMDHWQQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SANMDHWQQR 10 0 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4;H7C0X7 Q9NZL9 MAT2B Methionine adenosyltransferase 2 subunit beta 0 ; 133.42 0.00019763 633490000.0 319270.0 359600.0 391710.0 347910.0 326800.0 336970.0 368040.0 310760.0 441900.0 378510.0 False True 317551.085794232 371569.0686172098 446859.3631956446 391955.37032798387 368416.0429046438 313676.0570420575 350236.4991506669 333950.4892073057 332999.66615662863 354353.1677412857 0.8961429294349558 1.0485840185531896 1.2610564935654758 1.1061150456940507 1.0396860433137864 0.8852074303201187 0.9883825827863788 0.942422756754143 0.9397394928884979 1.0 18.434828420508165 2.9528744862057756 5.359803027883018 0.9506066805030563 1.0875938939909249 0.32005617960079136 0.0877475412537386 0.23928300677040107 16.241220156300514 0.027966701610559922 0.03044664404152624 897.1694694977367 -2.9528744862057756 0.13698721348786858 SANPTRPSS(ph)PVTSHISK ddPTM_BT-474_Trastuzumab_2h_R1 2 SANPTRPSSPVTSHISK 17 1 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 S(0.05)ANPT(0.026)RPS(0.369)S(0.522)PVT(0.031)SHISK;SANPTRPS(0.144)S(0.854)PVT(0.002)SHISK 147.17 2.4795e-07 2672800000.0 798560.0 1078070.0 1162740.0 1118010.0 1160490.0 1423700.0 1383810.0 1205310.0 1485140.0 1397190.0 True False 794260.6416883576 1113952.908242923 1326443.6852827447 1259549.951367853 1308271.5227368711 1325282.970029314 1316869.8236324433 1295256.352640165 1119147.1468564295 1308020.1380054606 0.6072235576582856 0.851632842550527 1.014085063938983 0.9629438529046521 1.000192187202709 1.0131976806184166 1.006765710534455 0.9902419045437951 0.8556039118502909 1.0 20.318953321763352 4.652050081221636 2.3526543468558976 0.9831504729038706 0.5544296290252806 0.8619632742209486 0.04554680466169936 0.1477825224510662 1.127522282499532 0.011192969360137127 0.11951439710999123 44879.71405634308 -4.652050081221636 -0.42872084387859 SANTS(ph)PESSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SANTSPESSSR 11 0 P20749;H7C0A2 P20749 BCL3 B-cell lymphoma 3 protein 1 S(0.002)ANT(0.293)S(0.702)PES(0.002)SSR;SANT(0.245)S(0.755)PESSSR 80.37100000000002 0.025798 21889000.0 124449.0 137249.0 113602.0 123107.0 119580.0 114549.0 134549.0 115854.0 136735.0 126670.0 True False 123778.98041158359 141817.24999622733 129596.17415371469 138692.33357755496 134807.80419381047 106630.4972493417 128040.35084290589 124499.61377469174 103038.49140512937 118585.81215235693 1.0437924922464972 1.1959040244546546 1.0928472116648478 1.1695525043026693 1.1367953867922398 0.8991842726712092 1.0797274017772205 1.0498693858480883 0.8688939219199964 1.0 16.855571887677833 2.7682729976094667 24.394164048209568 0.9965160827991673 1.1319432862818728 0.5146454358344528 0.0709730767081297 453.90203293482296 372657.2983269151 0.021243421003087702 0.022528845476481443 586.5067269237693 -2.7682729976094667 0.13542720348270554 SANYCHTSQGDPIGLILLGEVALGNMYELK ddPTM_BT-474_Trastuzumab_2h_R1 1 SANYCHTSQGDPIGLILLGEVALGNMYELK 30 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 88.51799999999999 0.00088918 7928900.0 3585.6 5395.9 6300.2 5343.5 6209.2 5702.5 5724.1 6117.5 6661.4 5735.4 False True 3566.2955279976086 5575.49926960957 7187.213397679921 6019.986552118598 6999.904815188231 5308.2995972411045 5447.203414814515 6574.01891403557 5019.787228186841 5369.361861677018 0.6641935522080353 1.0383914165673624 1.338560071538023 1.121173559764208 1.3036753706523225 0.9886276496148013 1.014497356509547 1.224357583525261 0.9348945661522254 1.0 12.390534921532014 4.703307849239722 3.8760337528467446 1.1285868189837196 0.6342543988132893 0.5100583218591713 0.1311734021561867 0.16227652679803434 4.718408022867065 0.030505677843196823 0.21170554628969734 50501.91530728973 -4.703307849239722 -0.49433242017043033 SAPAAAGGDKEAAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAPAAAGGDKEAAAR 15 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 95.197 0.0038105 119430000.0 152370.0 153760.0 148660.0 158130.0 153860.0 132350.0 160250.0 169450.0 201840.0 198610.0 False True 151549.65684989857 158877.80865011708 169590.03582411614 178149.24178656566 173453.1590003319 123200.95601838842 152498.09528555142 182095.21944966505 152099.23651743354 185934.53976142412 0.8150699544278035 0.8544824907409672 0.9120953860521025 0.9581288232684045 0.9328721776109631 0.662603925964857 0.8201708810058874 0.9793512258847368 0.8180257240671622 1.0 17.504435268975627 -0.2686691301438318 0.7389716849467828 1.0068135997956364 0.865476853660357 0.17506437133774833 0.08783675121829522 17.872633228165398 8.251283044955743 0.45656336387918 0.0322432644959112 0.5386800228311075 0.2686691301438318 -0.14133674613527947 SAPAS(ph)PNHAGVLSAHSSGAQTPESLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAPASPNHAGVLSAHSSGAQTPESLSR 27 0 Q01167;Q01167-2 Q01167 FOXK2 Forkhead box protein K2 1 S(0.151)APAS(0.849)PNHAGVLSAHSSGAQTPESLSR 191.16 8.690100000000001e-18 383610000.0 35576.0 63456.0 93870.0 97841.0 89936.0 87162.0 91703.0 73742.0 59374.0 80130.0 True False 35384.462768865196 65568.09460003792 107086.08006733349 110227.66056813614 101388.81650756432 81136.6960972783 87266.97555052061 79245.0024942886 44742.07327083881 75016.03479725555 0.4716919904457511 0.8740543908678671 1.4275092032890444 1.4693879897284148 1.351561926481265 1.0815913733185838 1.1633109612681536 1.0563741833124425 0.5964334610828523 1.0 16.19491138649015 1.411465560870606 6.016670393110528 0.7985937969364283 1.1393820012876796 0.15815049528107528 0.28968620832911224 0.36605090879579993 21.71084605816649 0.20588412042521081 0.07663154278729785 25.790844374344445 -1.411465560870606 0.34078820435125134 SAPAS(ph)PTHPGLMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 S(0.005)APAS(0.895)PT(0.101)HPGLMS(0.999)PR;S(0.002)APAS(0.995)PT(0.05)HPGLMS(0.953)PR;S(0.022)APAS(0.961)PT(0.017)HPGLMS(1)PR 203.31 7.9984e-09 2065930000.0 1307400.0 1153260.0 1001590.0 1107730.0 1044070.0 1077940.0 1024800.0 993840.0 1366950.0 1219100.0 True False 1300361.1036657963 1191645.5619396095 1142605.1660236537 1247968.5044218856 1177026.1258122758 1003424.5449978224 975226.5088838271 1068005.3874172636 1030083.4886915683 1141295.9942759785 1.1393723540497716 1.0441161345664514 1.0011470922129238 1.0934661215678572 1.0313066301077871 0.8791974650137804 0.8544904334852209 0.9357829982526055 0.9025559485513117 1.0 20.122241571375316 2.840906315480142 4.620993847927475 0.9079092331980418 1.0624827315056709 0.6940469788568526 0.04918441542531673 0.12535270020036277 4.393997800249045 0.014978898385157088 0.01592748935503658 693.2762387066496 -2.840906315480142 0.154573498307629 SAPAS(ph)PTHPGLMSPR ddPTM_BT-474_Trastuzumab_2h_R1 11 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 S(0.001)APAS(0.973)PT(0.026)HPGLMSPR;S(0.005)APAS(0.976)PT(0.02)HPGLMSPR;S(0.002)APAS(0.882)PT(0.116)HPGLMSPR;S(0.007)APAS(0.95)PT(0.043)HPGLMSPR;S(0.053)APAS(0.93)PT(0.017)HPGLMSPR;SAPAS(0.985)PT(0.015)HPGLMSPR;SAPAS(0.975)PT(0.025)HPGLMSPR;SAPAS(0.973)PT(0.027)HPGLMSPR;SAPAS(0.986)PT(0.013)HPGLMSPR;S(0.007)APAS(0.96)PT(0.033)HPGLMSPR;SAPAS(0.994)PT(0.006)HPGLMSPR 182.7 3.4516e-07 26082360000.0 4227320.0 6211080.0 5834590.0 5660040.0 5771640.0 6043050.0 6067420.0 5252970.0 6730140.0 5851790.0 True False 4204560.5788194025 6417812.043122852 6656049.556834592 6376600.48366303 6506624.142809541 5625308.177309573 5773915.714804756 5644973.295441178 5071587.176255649 5478323.752230528 0.7674903435758965 1.1714919258851408 1.2149792268345854 1.1639692672538318 1.1877034722820707 1.0268301823197652 1.0539566436638355 1.03041980553683 0.9257552867682795 1.0 22.38530309676502 1.8778295794291848 1.3046533413025385 0.9720638684617164 1.1089468417698947 0.12782936073595275 0.12263385339958889 0.8331664167586889 2.635083448118606 0.09406891241105851 0.04015778976694443 75.4795981664251 -1.8778295794291848 0.13688297330817822 SAPGGGGKR ddPTM_BT-474_Trastuzumab_2h_R1 8 SAPGGGGKR 9 1 Q14847;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;;;; 138.06 0.00023592 3598520000.0 1520167.0 1712125.0 1638923.0 1515018.0 1560173.0 1697932.0 2926625.0 3613378.0 4354196.0 4533502.0 False True 1511982.5897784322 1769112.04562358 1869669.1126259123 1706819.1234617059 1758851.7836801317 1580557.957342005 2785052.9679568033 3883026.6147217005 3281162.739037174 4244170.021033669 0.356249297809749 0.41683345315009607 0.4405264405902744 0.40215616127602954 0.4144159576462403 0.37240684268276786 0.6562067386919864 0.9149083555743104 0.77309879735639 1.0 22.01705102095596 2.0092908761788237 2.7844047306768376 0.8834099416704378 0.4029796374593088 0.9347251197084478 0.05879907412344188 0.059022215347872976 0.87842138485312 0.027504180886752803 0.015940939778299253 102.16235044810931 -2.0092908761788237 -0.48043030421112903 SAPGTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAPGTSPR 8 0 Q03111 Q03111 MLLT1 Protein ENL 1 SAPGT(0.065)S(0.935)PR 92.732 0.012136 757550000.0 1459100.0 1694800.0 1557300.0 1639200.0 1616900.0 1242200.0 1694300.0 1499200.0 1957500.0 1740800.0 True False 1451244.3677212496 1751210.3934717656 1776554.3037057444 1846722.5519290373 1822802.6308828604 1156329.6378242713 1612340.2361454612 1611077.916783347 1475100.3541561454 1629700.6536261365 0.8904975060862766 1.074559545383544 1.0901108125304202 1.1331667247110813 1.1184892310296777 0.7095349905219714 0.9893474808137017 0.9885729095086553 0.9051357688750996 1.0 20.636175561271585 SAPTAPT(ph)PPPPPPPATPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 SAPT(0.273)APT(0.727)PPPPPPPATPR;SAPTAPT(1)PPPPPPPATPR 214.46 1.1227e-17 575510000.0 561600.0 653640.0 589260.0 653750.0 656890.0 736870.0 654650.0 579070.0 754910.0 697040.0 True False 558576.4079996253 675396.0122662769 672222.6860602632 736514.6829695023 740541.0478079302 685931.9113054022 622982.0784941419 622283.1438578791 568872.545775743 652554.310434033 0.855984550355816 1.0350035260927954 1.0301405956741718 1.1286641911531083 1.134834351665495 1.0511491539289177 0.9546823437267287 0.9536112686834913 0.871762758562378 1.0 19.315738452951795 2.2000544480469757 5.105182742452465 0.9413832895771747 1.0472906013456476 0.2598745658756455 0.07735599848513665 0.2591736236034743 15.940638473001721 0.030575535607262536 0.022858386072432266 158.5091904975851 -2.2000544480469757 0.1059073117684729 SAQGSSS(ph)PVPSMVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SAQGSSSPVPSMVQK 15 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 SAQGSS(0.002)S(0.998)PVPSMVQK;SAQGSS(0.036)S(0.964)PVPSMVQK 300.29 3.0532999999999996e-44 1164620000.0 3092800.0 2810900.0 2593600.0 2615610.0 2677420.0 3181600.0 3096900.0 2873100.0 3876400.0 3370300.0 True False 3076148.708442387 2904459.107275067 2958756.3360246746 2946745.9578154655 3018373.5666883485 2961663.4806808056 2947091.1156931357 3087505.3113061856 2921113.161098788 3155204.5685409997 0.9749442996860362 0.9205295708031127 0.9377383531720845 0.9339318240078717 0.9566332391829911 0.9386597338917744 0.9340412171930589 0.9785436234753809 0.9258078510102887 1.0 21.589302115087307 -4.87993067095414 0.25076046392800905 1.3137033194175503 0.9403452222433447 0.4203699339396133 0.018997501424485783 156.54421942323185 1.6413155689707093 25.1020101976758 0.025881374088774365 1.3184671966232845e-05 4.87993067095414 -0.37335809717420554 SAQNLPGGGPASHSNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAQNLPGGGPASHSNPR 17 0 Q9BYV8-5;Q9BYV8-2;Q9BYV8 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 0 ; 81.51 0.0091448 64719000.0 80903.0 83392.0 76484.0 73637.0 67982.0 82974.0 84959.0 82099.0 96816.0 90078.0 False True 80467.42723716827 86167.65230847147 87252.28238915444 82959.43664982822 76639.10473911725 77238.20267978664 80849.20859510254 88225.64427027486 72956.99406793425 84329.1449203443 0.9542066068993853 1.0218015656374055 1.0346634306747835 0.9837575932756121 0.9088092238040487 0.9159135047882244 0.9587338834215756 1.0462058444160807 0.8651456638964861 1.0 16.363743705441095 3.4733512634463173 24.97692995117593 0.9561050026356994 1.0060197877947084 0.18428329351890993 0.0509232957491553 201.5419930952933 1335244.7897876482 0.014733906863472897 0.020052524541055116 2974.070529018555 -3.4733512634463173 0.049914785159008934 SAQSLEYCAELLGLDQDDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SAQSLEYCAELLGLDQDDLR 20 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;;; 264.03 3.6452999999999996e-36 262987000.0 211144.0 261292.0 227489.0 239135.0 231029.0 262523.0 244321.0 230018.0 275914.0 266334.0 False True 210007.22416430357 269988.94626565074 259517.47383016537 269409.4664809358 260449.17373383386 244375.40292267012 232502.25983314376 247183.11116773754 207918.6917581805 249336.33609999067 0.8422648196774856 1.082830326653143 1.0408329483356642 1.0805062378589507 1.0445696676532001 0.9801034487996524 0.9324844644380433 0.9913641751301357 0.8338884536861063 1.0 17.927733618362577 2.5042522028551133 3.863039943630189 0.9445559425907752 1.0261444550574212 0.18603730083379755 0.07632448069519329 0.3640490425140516 11.838055931503899 0.025769072380752576 0.0228803545317166 319.33917785388286 -2.5042522028551133 0.081588512466646 SAS(ph)ASHQADIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 SAS(0.5)AS(0.5)HQADIK;SAS(0.922)AS(0.078)HQADIK 221.96 8.4213e-12 912280000.0 581670.0 547290.0 567480.0 482530.0 523640.0 786910.0 678100.0 566140.0 862460.0 706790.0 True False 578538.3533496127 565506.2168062087 647376.2513754171 543618.248525084 590322.4501425567 732512.7638868921 645297.7124064435 608388.2416006696 649918.2893719071 661682.0570866374 0.8743449322124535 0.8546494660836241 0.9783796378366247 0.8215701826926 0.8921542360415899 1.1070464372452835 0.975238342184563 0.9194570641364849 0.9822214195039145 1.0 19.33577863278386 2.9589285462585386 24.97917587561079 0.9856295545839785 0.8833490806445276 0.4839363612896749 0.057618696502227514 489.0787330423845 297451.8909368113 0.018116675660226608 0.01921774051513073 909.7635784450298 -2.9589285462585386 -0.10228047393945094 SAS(ph)ASPLTPCSVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SASASPLTPCSVTR 14 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 SAS(0.793)AS(0.207)PLTPCSVTR;S(0.005)AS(0.995)ASPLTPCSVTR;SAS(1)ASPLTPCSVTR 172.85 1.384e-07 0.0 378450.0 218562.0 191975.0 235609.0 189959.0 272251.0 274498.0 292941.0 475210.0 296995.0 True False 376412.4672497478 225836.70404648097 219003.41132338674 265437.07524246495 214149.15267479568 253430.92917991884 261219.48305580835 314801.74494425737 358100.8629877613 278040.52482978767 1.3538043329481628 0.8122438417375845 0.7876672346862293 0.9546704582181379 0.7702084176610393 0.9114891771085007 0.939501474526863 1.132215331333353 1.2879448533877766 1.0 18.084935647709628 1.7216354478409956 3.759334037229438 1.1638004021169612 0.9145120283000815 0.2355562867157176 0.1686356477731888 0.2442469171409034 7.723460700531628 0.09037436157066085 0.043614590697345496 52.67874838515007 -1.7216354478409956 -0.24928837381687974 SAS(ph)DNTLVAMDFSGHAGR ddPTM_BT-474_Trastuzumab_2h_R1 11 SASDNTLVAMDFSGHAGR 18 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 1 S(0.356)AS(0.643)DNT(0.001)LVAMDFSGHAGR;S(0.037)AS(0.963)DNTLVAMDFSGHAGR;S(0.232)AS(0.768)DNTLVAMDFSGHAGR;S(0.131)AS(0.869)DNTLVAMDFSGHAGR;S(0.046)AS(0.954)DNTLVAMDFSGHAGR;S(0.02)AS(0.98)DNTLVAMDFSGHAGR;S(0.275)AS(0.725)DNTLVAMDFSGHAGR;S(0.005)AS(0.995)DNTLVAMDFSGHAGR;SAS(0.958)DNT(0.042)LVAMDFSGHAGR;S(0.17)AS(0.83)DNTLVAMDFSGHAGR;S(0.155)AS(0.845)DNTLVAMDFSGHAGR 383.92 2.0818999999999996e-126 25381070000.0 4004803.0 4598129.0 4209018.0 4420195.0 4121387.0 4574862.0 4763592.0 4369480.0 5192310.0 4865320.0 True False 3983241.585623438 4751174.944137324 4801611.148959708 4979791.233787202 4646221.205075395 4258612.558006775 4533158.856271399 4695552.785369862 3912734.773889398 4554811.112189984 0.8745130121780766 1.0431113008005566 1.0541844723503937 1.09330356652109 1.0200689096943607 0.934970178370186 0.9952462889491428 1.030899563058326 0.8590333775681268 1.0 22.118959796094167 2.8840454042496995 8.777133378312788 0.9740138538300963 1.0252977109270554 0.11536397680000032 0.0690081513608436 0.7538216073590108 52.59179732215828 0.021224949307902353 0.02253423266790743 765.6766520375947 -2.8840454042496995 0.05128385709695904 SAS(ph)EPSLHR ddPTM_BT-474_Trastuzumab_2h_R1 7 SASEPSLHR 9 0 Q96II5;P10398;P04049;P04049-2;H7C155 Q96II5;P04049 ARAF;RAF1 Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase 1 S(0.097)AS(0.903)EPSLHR;S(0.116)AS(0.884)EPSLHR;S(0.014)AS(0.986)EPSLHR;S(0.115)AS(0.885)EPSLHR;S(0.084)AS(0.916)EPSLHR;S(0.002)AS(0.857)EPS(0.141)LHR;S(0.127)AS(0.873)EPSLHR 139.15 7.505100000000001e-05 6376920000.0 3520210.0 4160910.0 3896090.0 4301540.0 3998010.0 4296450.0 4255360.0 3924460.0 4812830.0 4543790.0 True False 3501257.5804921 4299403.374026792 4444625.606578638 4846114.522953172 4507132.875438167 3999446.5242554173 4049511.979746177 4217323.133204088 3626772.53511792 4253801.432065666 0.8230890972247084 1.0107202798930326 1.044859680819729 1.139243239334723 1.0595541299748639 0.9402052700690515 0.9519748498884949 0.9914245412146885 0.8525956354659325 1.0 22.020321259026066 2.7256191245515127 24.175116714312352 0.9508402465849232 1.0237345823040256 0.13952631812034255 0.08326446127333809 1008.8798152311372 1884616.2829145114 0.02780788903290448 0.026394137653508083 531.6418058877407 -2.7256191245515127 0.07289433571910242 SAS(ph)EPSLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASEPSLNR 9 0 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0 P15056 BRAF Serine/threonine-protein kinase B-raf 1 SAS(0.805)EPS(0.195)LNR 135.55 0.00022841 1093700000.0 794630.0 825030.0 741240.0 838770.0 734480.0 937630.0 757010.0 673830.0 1059700.0 879130.0 True False 790351.800371692 852490.6248088332 845600.1490264212 944958.1959989741 828011.674395969 872813.8450436093 720390.5342409696 724114.6162394093 798551.1342524993 823023.1707389408 0.9603032192423997 1.0358039179424747 1.0274317650950338 1.1481550332909285 1.0060611946715294 1.0604972934844161 0.8752979987114775 0.8798228798215636 0.9702656773751952 1.0 19.650573522142768 2.2445830225960752 24.999283360290896 0.915240414506396 1.0423731574549517 0.4516754425700281 0.057358960234874704 111.29336063458702 461984.8794556287 0.020116942674962987 0.016425742929848088 175.62365958756118 -2.2445830225960752 0.1271327429485557 SAS(ph)FNTDPYVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASFNTDPYVR 11 0 Q9UKV8-2;Q9UKV8 Q9UKV8-2 AGO2 Protein argonaute-2 1 S(0.001)AS(0.992)FNT(0.007)DPYVR 143.91 3.8774e-05 261720000.0 421190.0 463670.0 390880.0 441380.0 373970.0 410830.0 385240.0 381860.0 474320.0 443350.0 True False 418922.3598386084 479102.975655566 445912.5064101345 497258.6627442885 421592.8628061499 382430.289089796 366604.46944028605 410356.3322457907 357430.191562372 415055.023428969 1.0093176475198142 1.1543119553100842 1.0743455234591235 1.1980547991834811 1.0157517413550825 0.9213966040703606 0.8832671543439959 0.9886793535364053 0.8611633913245271 1.0 18.66294308021222 2.994444736600835 4.774705483606275 0.933324818182317 1.11042659734124 0.6565584866357079 0.06061442740385733 0.10841011903313487 6.767012761045869 0.01727629230921492 0.019663135806774455 987.2899964053787 -2.994444736600835 0.1771017791589229 SAS(ph)LETK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASLETK 7 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.001)AS(0.999)LETK;S(0.001)AS(0.999)LETK 99.855 0.010722 405180000.0 1369810.0 992320.0 790400.0 970740.0 983630.0 805680.0 1029670.0 930080.0 1555920.0 1186110.0 True False 1362435.0951601989 1025348.771329893 901681.4497200423 1093635.584467785 1108889.4500682203 749985.2379667186 979860.9283786202 999487.2924505445 1172484.364259835 1110411.4443201404 1.2269642051414216 0.9233953563561048 0.8120246367526454 0.9848922127575633 0.9986293420698199 0.6754120211953543 0.8824305021266681 0.9001053596511605 1.0559008287038139 1.0 20.082662911390116 4.7347368852973775 5.2003021351660745 0.9032694409538625 1.2403431853399243 0.44330582436490784 0.10446821347437793 0.1355398283495266 12.543146162105788 0.024684842631923713 0.1634108447512037 54292.130622199875 -4.7347368852973775 0.33707374438606175 SAS(ph)LETKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASLETKK 8 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.006)AS(0.994)LETKK 77.744 0.019858 465590000.0 700840.0 443670.0 408820.0 459230.0 430810.0 512410.0 551250.0 491200.0 989450.0 630800.0 True False 697066.7553106436 458437.28774582094 466378.3024728583 517368.4709140867 485671.0998890742 476988.3027833961 524583.9315205012 527855.8382630608 745613.3054507271 590541.8039449499 1.1803851152519322 0.7762994671729562 0.7897464656309647 0.8760911885626909 0.8224161213392241 0.8077130181081318 0.8883095625342092 0.8938500792608872 1.2625919121556939 1.0 19.17167966481176 1.3365271315482927 7.068025352177109 1.1289442243839867 0.8685316744735857 0.39751553258235606 0.12370177267240082 0.18491686531996362 11.09874700528832 0.07907226859199462 0.02860402375377129 21.703367861292108 -1.3365271315482927 -0.26041254991040097 SAS(ph)MKLPDNTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASMKLPDNTVK 12 1 O00515;E9PDI4 O00515 LAD1 Ladinin-1 1 S(0.001)AS(0.999)MKLPDNTVK 93.909 0.004183 344960000.0 998200.0 164480.0 112510.0 296150.0 101980.0 192110.0 187000.0 208730.0 612410.0 312980.0 True False 992825.8021104466 169954.6173697404 128350.43004554907 333642.5596350568 114966.54851718343 178829.8878782971 177954.0955906281 224306.49250946383 461489.76137357135 293005.3484443409 3.3884221137316306 0.5800393005523066 0.4380480790777457 1.1386910218754431 0.3923701363390723 0.6103297732541817 0.6073407756392274 0.7655371947999541 1.5750216295496586 1.0 18.160567473909257 1.2527220522503217 24.967181321607477 1.287511004733089 0.9056603175590451 0.011650272473896606 0.8466251230123824 851.1454756390897 1500618.9509898792 0.5486715902560224 0.19825826903629917 17.894602358880547 -1.2527220522503217 -0.381850687174044 SAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_BT-474_Trastuzumab_2h_R1 5 SASPDDDLGSSNWEAADLGNEER 23 0 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 S(0.161)AS(0.839)PDDDLGSSNWEAADLGNEER;S(0.129)AS(0.871)PDDDLGSSNWEAADLGNEER;S(0.13)AS(0.827)PDDDLGS(0.043)SNWEAADLGNEER;S(0.095)AS(0.905)PDDDLGSSNWEAADLGNEER;S(0.04)AS(0.96)PDDDLGSSNWEAADLGNEER 351.71 7.556699999999996e-102 2808574000.0 1074563.0 1224529.0 1102691.0 1212065.0 1188478.0 1218542.0 1162044.0 1194569.0 1240574.0 1176049.0 True False 1068777.6722031732 1265286.7075215888 1257940.3080380082 1365512.3047241753 1339823.6286389993 1134307.0596793278 1105831.4922808341 1283713.804678472 934851.1605399254 1100992.5459537941 0.9707401527203682 1.1492236820054635 1.1425511577358134 1.2402557217508012 1.2169234329177996 1.030258618778089 1.0043950763743346 1.1659604866501487 0.8490985374747113 1.0 20.07037327078604 2.715239584049883 23.571178079409425 1.031701745767187 1.1495062735120851 0.30201840037854444 0.09894867243244815 555.5491979778708 561506.5154190436 0.03244437799360054 0.030612221191388997 519.0863204975338 -2.715239584049883 0.11780452774489802 SAS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 S(0.001)AS(0.999)PDDDLGSSNWEAADLGNEERK;S(0.004)AS(0.996)PDDDLGSSNWEAADLGNEERK;S(0.006)AS(0.994)PDDDLGSSNWEAADLGNEERK 240.68 9.126799999999996e-38 4376340000.0 1621520.0 1894380.0 1701380.0 1795380.0 1811190.0 2146750.0 2072710.0 1967180.0 3244380.0 2394140.0 True False 1612789.9164878067 1957433.2931231083 1940919.5153399368 2022674.9239155427 2041834.310735809 1998350.2254059345 1972445.0987788814 2113980.960737638 2444846.0214646845 2241343.935473624 0.7195637808915765 0.8733301757677266 0.86596237401191 0.9024384396802207 0.9109866087126622 0.8915857105989662 0.88002785630581 0.9431756221255384 1.090794671344386 1.0 21.09593261751635 7.792379731301094 0.1787900609357955 1.0304889451623966 1.5964806653647592e-14 0.6687006275317882 0.052338424729307 34.50269858445257 0.4120539865555954 0.12276713469378375 9.50953907464765 61998292.867978625 -7.792379731301094 -1.0304889451623807 SAS(ph)PDGGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASPDGGPR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 S(0.02)AS(0.98)PDGGPR 96.009 0.008033499999999999 165520000.0 327840.0 377080.0 370750.0 361860.0 364710.0 290210.0 370560.0 316250.0 416950.0 388740.0 True False 326074.9458664483 389630.8798503266 422948.37738323066 407671.43889765785 411153.65669446974 270148.46578085737 352634.5971233323 339850.1808849608 314198.2593437572 363930.2803829421 0.895981904894913 1.070619568782079 1.1621686904925508 1.1201910389778216 1.1297594040865115 0.7423082945903712 0.9689619581868153 0.9338332070839414 0.8633473944876066 1.0 18.4733025683228 2.7662888678449296 24.99771486132256 0.9062987758181352 1.082730074052318 0.46381460137393105 0.09335394137194758 657.2788719590895 592552.390033133 0.028463300975665486 0.03018404338999948 583.833307671336 -2.7662888678449296 0.1764312982341828 SAS(ph)PDYNR ddPTM_BT-474_Trastuzumab_2h_R1 6 SASPDYNR 8 0 Q14669-3;Q14669;Q14669-2;G5E9G6;C9JLD7;C9JLJ5;C9JSX9;F8W9P3 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 SAS(1)PDYNR;SAS(1)PDYNR;S(0.137)AS(0.862)PDY(0.001)NR;S(0.006)AS(0.994)PDYNR;S(0.016)AS(0.984)PDYNR;SAS(1)PDYNR 163.38 0.00040564 968660000.0 1818590.0 2568280.0 2440620.0 2378050.0 2267090.0 2402270.0 2449950.0 2309510.0 2811680.0 2461650.0 True False 1808798.9135043458 2653763.647241952 2784238.081750668 2679110.8861730383 2555790.473404803 2236206.729235314 2331436.5587821337 2481857.3636541557 2118779.138581736 2304545.3894754057 0.7848831798952292 1.1515345539998414 1.2081506810262725 1.1625333562134337 1.1090215385111548 0.9703461426482696 1.01166875229689 1.0769401093111524 0.9193913681448659 1.0 21.136050752067604 2.7498737939094307 23.719058250590123 1.008049584219523 1.0983660374977178 0.1159890308277729 0.1146680764546362 815.2955942967584 1709337.2038487794 0.03550655381596804 0.03730370423584222 562.1779323956155 -2.7498737939094307 0.09031645327819482 SAS(ph)PHDVDLCLVSPCEFEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.012)AS(0.988)PHDVDLCLVSPCEFEHR;S(0.137)AS(0.863)PHDVDLCLVSPCEFEHR;S(0.231)AS(0.769)PHDVDLCLVSPCEFEHR 255.67 2.3512e-36 8722000000.0 287406.0 322366.0 259613.0 332300.0 305677.0 303053.0 292964.0 292111.0 351836.0 315003.0 True False 285858.63802980847 333095.75743563817 296164.2538033518 374369.1459285132 344603.15406047367 282103.65942002775 278792.2120888381 313909.80612960266 265130.7321608593 294899.2388523635 0.9693434243583076 1.129523964632534 1.0042896514616695 1.269481560499839 1.1685454170771652 0.95661033415301 0.9453812535216847 1.064464619682374 0.8990553288392604 1.0 18.16986257318323 2.730248168534096 24.912904184990406 0.9819871093368048 1.1126026243795415 0.3719172081572142 0.08733297574152665 687.2417914949476 2059701.4251937182 0.028445597669430802 0.027234659621092023 537.3387596979375 -2.730248168534096 0.13061551504273672 SAS(ph)PHDVDLCLVSPCEFEHRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.115)AS(0.885)PHDVDLCLVSPCEFEHRK 180.37 2.5451e-17 646100000.0 236940.0 337700.0 262030.0 298380.0 268080.0 331020.0 334470.0 247760.0 512570.0 329150.0 True False 235664.3413665088 348940.14035603934 298921.54639441095 336154.87740640936 302218.39896535134 308137.3665372642 318290.4083005203 266249.10929978796 386253.9915861126 308143.36520050716 0.7647879785215019 1.1323954359003834 0.9700729600324328 1.0909041549139806 0.9807720467020262 0.9999805328820269 1.032929617333836 0.8640429727459527 1.25348793843015 1.0 18.233242202439733 4.755302763675246 24.04870927830876 1.021323188660962 0.764787633975078 0.3885914773780821 0.10056439803861977 2029.0281044394733 2914449.2291460056 0.022661306319321773 0.5944305794974032 56924.96387427187 -4.755302763675246 -0.25653555468588396 SAS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SASPPK 6 0 P52701;P52701-3;P52701-2;A0A087WWJ1;F8WAX8;F8W7G9 P52701 MSH6 DNA mismatch repair protein Msh6 1 SAS(1)PPK;SAS(1)PPK;S(0.001)AS(0.999)PPK;SAS(1)PPK 98.629 0.041662 3047240000.0 10696900.0 7905500.0 6428200.0 5903900.0 6274300.0 5947400.0 9048100.0 8989000.0 14332700.0 9990400.0 True False 10639309.078937305 8168629.788524327 7333234.685083975 6651333.134659495 7073294.914310304 5536270.2366737 8610408.8359014 9659804.825217128 10800598.133340372 9352804.118788231 1.137552860490759 0.8733883105832299 0.7840680283630365 0.7111592470217644 0.7562753185540612 0.5919369385222397 0.9206232405321648 1.0328244559096649 1.1547978548640576 1.0 23.156967541999155 1.8303640530210081 3.1314659047968245 1.0730851674431117 0.8022157718111588 0.39830504106363296 0.13759484347559156 0.24898857719412298 4.346770239862366 0.07738135308303296 0.03960262266154697 67.66499483782837 -1.8303640530210081 -0.2708693956319529 SAS(ph)PPKAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASPPKAK 8 1 P52701;P52701-3;P52701-2;A0A087WWJ1;F8WAX8;F8W7G9 P52701 MSH6 DNA mismatch repair protein Msh6 1 SAS(1)PPKAK 109.16 0.0022241 658970000.0 672030.0 570550.0 607570.0 640110.0 577410.0 664160.0 892130.0 774870.0 1550400.0 949450.0 True False 668411.8651495524 589540.4118452417 693110.5749068896 721147.8603680427 650939.7409227978 618248.1824644724 848974.2636324438 832694.7341101327 1168324.6942956261 888855.2881349592 0.7519917742201295 0.6632580350421776 0.7797788730730387 0.8113220115742253 0.7323348914181883 0.6955554978603005 0.9551321513919373 0.9368169883506399 1.3144149670831837 1.0 19.7615890317549 1.7649515570983003 1.6275375718415324 1.1365102357482944 0.7425390257967167 0.7218369864719161 0.09773459354822141 0.17637671991011872 0.9084304579465609 0.06862873717162969 0.027702448072834875 58.20382913269708 -1.7649515570983003 -0.39397120995157764 SAS(ph)PSNIK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASPSNIK 8 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 SAS(1)PSNIK;SAS(1)PSNIK;SAS(0.592)PS(0.408)NIK 160.33 0.00037128 738140000.0 1305850.0 1202940.0 1078090.0 1080960.0 1131120.0 1163940.0 1259390.0 1310190.0 1839330.0 1409790.0 True False 1298819.448693573 1242979.1307074132 1229875.7010737346 1217809.4251666737 1275161.4273265016 1083479.5674200451 1198468.494363001 1407963.0308100132 1386051.767259271 1319815.9952180567 0.9840913077273209 0.9417821387306731 0.931853914128793 0.9227115215901519 0.9661660655323567 0.8209322900659614 0.9080572585157927 1.0667873672628077 1.0501856109345538 1.0 20.331905376718083 1.743246945177298 8.629464353962877 1.0423790757742168 0.9234579920604025 0.5861796091931992 0.04377307924308246 0.07570408808935405 21.590245184321795 0.021592558426720695 0.011604708788647698 55.36648403567245 -1.743246945177298 -0.11892108371381438 SAS(ph)PSTQQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SASPSTQQEK 10 0 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 SAS(1)PSTQQEK;SAS(1)PSTQQEK;SAS(0.985)PS(0.013)T(0.003)QQEK;SAS(1)PSTQQEK 244.73 1.8195e-12 809246000.0 1570660.0 1453710.0 1232760.0 1120342.0 1316590.0 1244830.0 1559310.0 1494730.0 2018970.0 1635780.0 True False 1562203.741076733 1502095.8585637466 1406321.8926579948 1262177.1823287478 1484249.9324596855 1158777.832114625 1483880.2181573375 1606274.3426851477 1521421.8963119453 1531383.1199382844 1.0201260029166905 0.9808752878406299 0.9183344614081095 0.8242073233637408 0.9692218185867829 0.7566870870049321 0.9689803935001835 1.0489043021121203 0.9934952765923523 1.0 20.546403829359217 2.0037667012161493 24.99919053077345 1.016910858588335 0.9094442660723219 0.2865319789520343 0.07311851222874306 132.35521135854486 878421.6772538115 0.02788806578555133 0.020502618240769068 100.87108708098178 -2.0037667012161493 -0.1074665925160132 SAS(ph)PSVPGPTKPKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASPSVPGPTKPKPK 15 2 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ6 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 S(0.155)AS(0.69)PS(0.155)VPGPTKPKPK 81.723 0.006863299999999999 723970000.0 1254600.0 1096100.0 1267900.0 1007500.0 1120400.0 1920500.0 1477200.0 1567100.0 2516400.0 1581700.0 True False 1247845.372999164 1132583.0258935592 1446409.2992156397 1135049.3966986986 1263076.2988689207 1787740.3553707204 1405742.1925479975 1684044.9595725588 1896266.9380324518 1480754.5518385028 0.8427091251888039 0.7648688464184329 0.9768055734961476 0.7665344639929844 0.8529950472214904 1.207317143243669 0.9493418006398359 1.1372883895454862 1.2806085489847385 1.0 20.497901090307494 2.755130556224543 22.546142315128108 1.1106056069818258 0.8399970097178889 0.6367040938565701 0.1035082553254145 143.7627329904385 195612.12486242398 0.03072722721211963 0.032472683232045524 569.0239633072583 -2.755130556224543 -0.2706085972639368 SAS(ph)PTVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASPTVPR 8 0 Q92817;K7EKI0;K7EQ87 Q92817 EVPL Envoplakin 1 S(0.052)AS(0.946)PT(0.002)VPR;S(0.023)AS(0.938)PT(0.039)VPR 117.81 0.0021055 331510000.0 1266210.0 1413470.0 1311650.0 1345870.0 1301800.0 1504630.0 1356230.0 1261110.0 1601770.0 1434740.0 True False 1259392.8660491565 1460516.4944893431 1496318.9189338202 1516257.0040048405 1467576.5136268823 1400618.469618041 1290623.973598275 1355220.4319868227 1207035.2461183597 1343173.6648572874 0.9376247457792194 1.087362366239159 1.114017463328396 1.128861474637342 1.092618588366094 1.0427679653523114 0.9608764729134295 1.008968882762316 0.8986442168270233 1.0 20.35721441856505 2.3833058120240644 3.5302449606815207 0.9718009347326951 1.0779746018845007 0.4347160239705008 0.05628122021336262 0.22805986773520784 5.5981155758660375 0.02096872101641427 0.017188640766776953 241.7162299997464 -2.3833058120240644 0.10617366715180554 SAS(ph)QDCIETTPGAQEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASQDCIETTPGAQEGK 17 0 Q99767;Q99767-2 Q99767 APBA2 Amyloid beta A4 precursor protein-binding family A member 2 1 SAS(1)QDCIETTPGAQEGK 289.72 6.216900000000001e-46 424610000.0 428570.0 342900.0 282630.0 303710.0 297020.0 393040.0 321720.0 318350.0 508310.0 357510.0 True False 426262.62673860346 354313.21921257314 322421.8473360013 342159.654859912 334843.73642453225 365870.0699166403 306157.1745102503 342106.8935485447 383043.81150503695 334693.40572028974 1.273591350929812 1.058620257097865 0.963334926310009 1.0223077270481449 1.0004491594446534 1.0931499206841426 0.9147391889940976 1.0221500863224373 1.1444617819125922 1.0 18.352480601116003 4.720006092096407 3.595353043974469 1.0171434849515575 1.2981130761813797 0.6120203986643902 0.06011720769925425 0.16132805047144635 3.802594246237395 0.014045934455290987 0.1187054433029027 52481.482207498666 -4.720006092096407 0.28096959122982224 SAS(ph)QDCIETTPGAQEGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASQDCIETTPGAQEGKK 18 1 Q99767;Q99767-2 Q99767 APBA2 Amyloid beta A4 precursor protein-binding family A member 2 1 S(0.011)AS(0.989)QDCIETTPGAQEGKK 109.68 0.00018523 0.0 219530.0 190440.0 136830.0 154250.0 142530.0 206200.0 186910.0 190080.0 366560.0 235170.0 True False 218348.07487207578 196778.68027658915 156094.4746523193 173778.03418439114 160680.35065850345 191945.87934258953 177868.44923446162 204264.7348066826 276226.19965235103 220161.24926083363 0.9917643345736574 0.8937934397504157 0.7090006764423292 0.7893216211655373 0.7298303002820409 0.8718422519268308 0.8079007992170952 0.9277960380969776 1.254654034621211 1.0 17.74820103589622 1.4465262313495026 4.295490081111457 1.1255935252992508 0.8244605698884651 0.5996117705595054 0.09636215848146684 0.12961972845159236 4.500678382492953 0.06593353950908183 0.024540581906034253 27.959295963890543 -1.4465262313495026 -0.3011329554107858 SAS(ph)QSS(ph)LDKLDQELK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 S(0.066)AS(0.933)QS(0.026)S(0.974)LDKLDQELK;S(0.09)AS(0.747)QS(0.174)S(0.989)LDKLDQELK;S(0.013)AS(0.979)QS(0.032)S(0.976)LDKLDQELK 218.64 2.2842e-11 512080000.0 4601640.0 2473120.0 2126100.0 1970430.0 1965550.0 3608790.0 3345200.0 3313040.0 5788530.0 3205500.0 True False 4576865.281530266 2555436.304167391 2425436.3996075154 2219886.2359672585 2215851.1417724085 3359322.8414778966 3183379.896095024 3560275.86807624 4362024.343828087 3000922.2456333824 1.5251529053077018 0.8515503218671479 0.8082303375693083 0.739734672965085 0.7383900549228409 1.1194301506365318 1.0608005258140674 1.1863939071586305 1.4535612677653456 1.0 21.51697450828958 2.1735904800018067 1.7287767966731515 1.2239675818703497 0.9182369831956438 0.1793384259436691 0.2406781086605123 0.5644108177313356 3.3023770691707237 0.13357400877456493 0.078064972510992 149.13874356198218 -2.1735904800018067 -0.30573059867470587 SAS(ph)QSSLDKLDQELK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 S(0.006)AS(0.981)QS(0.011)S(0.002)LDKLDQELK;S(0.14)AS(0.845)QS(0.013)S(0.002)LDKLDQELK;S(0.001)AS(0.601)QS(0.35)S(0.048)LDKLDQELK 167.05 8.073399999999998e-07 1223480000.0 1363950.0 929250.0 916550.0 822850.0 867140.0 1405010.0 1270530.0 1134340.0 1707350.0 1275920.0 True False 1356606.6447490924 960179.5245065131 1045592.2732045855 927022.7256312894 977565.1390585455 1307884.9657377864 1209069.6100040688 1218990.2108618075 1286596.4698178787 1194489.6932299288 1.135720678410205 0.8038407781570427 0.8753464170773034 0.7760826492563512 0.8183956250096942 1.0949319807031854 1.0122059795549307 1.0205112842502881 1.0771097290416052 1.0 20.18796297473816 2.7394015391090876 24.99926699791211 1.0379924516258139 0.8713015696208153 0.4011561119988417 0.09671437731609968 74.49397513726439 2214612.4987768363 0.029738152734052652 0.029909265035036436 548.7841241403365 -2.7394015391090876 -0.1666908820049986 SAS(ph)SDTSEELNSQDSPPK ddPTM_BT-474_Trastuzumab_2h_R1 7 SASSDTSEELNSQDSPPK 18 0 O14745;O14745-2;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 SAS(0.875)S(0.122)DT(0.003)SEELNSQDSPPK;S(0.001)AS(0.995)SDT(0.003)SEELNSQDSPPK;S(0.015)AS(0.492)S(0.492)DTSEELNSQDSPPK;S(0.047)AS(0.953)SDTSEELNSQDSPPK;S(0.001)AS(0.998)S(0.001)DTSEELNSQDSPPK;S(0.003)AS(0.894)S(0.099)DT(0.003)SEELNSQDSPPK;S(0.005)AS(0.994)S(0.001)DTSEELNSQDSPPK 503.59 6.959499999999993e-267 11257870000.0 6423400.0 4804630.0 4516266.0 3928008.0 4203410.0 6206420.0 6114930.0 5896880.0 6835280.0 6222150.0 True False 6388817.128106823 4964549.205089837 5152116.996712218 4425293.410052268 4738689.347936993 5777384.793741195 5819127.474598924 6336935.129349901 5150816.83205947 5825047.059949383 1.0967837791446682 0.8522762398305803 0.8844764589347348 0.7597008855909091 0.813502328679585 0.9918177028069192 0.9989837703816746 1.087877070199149 0.8842532565057472 1.0 22.473838274521366 2.6359863923504876 6.2503016892072605 1.0074554536207707 0.8734539768110628 0.2503156883811942 0.0942602219397667 0.29715064779170136 15.373044096124815 0.031171928431564556 0.02933280317607788 432.5002793905284 -2.6359863923504876 -0.13400147680970786 SAS(ph)SGLGEFNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSGLGEFNAR 12 0 Q86YS3-2;Q86YS3 Q86YS3-2 RAB11FIP4 Rab11 family-interacting protein 4 1 SAS(0.5)S(0.5)GLGEFNAR 157.67 7.786e-05 117470000.0 56865.0 61532.0 59932.0 60643.0 68333.0 66959.0 59935.0 70173.0 78735.0 65750.0 True False 56558.845158295466 63580.05542312052 68369.9046617175 68320.39758213308 77034.80250857725 62330.28193453168 57035.715076065724 75409.66559127392 59331.8142449472 61553.778708593 0.9188525277392883 1.0329188029888512 1.1107344844805274 1.1099301946282536 1.2515040363853904 1.012615037488028 0.9265997355919182 1.2251021330189533 0.9639020623873475 1.0 15.909559804200914 4.649679965566413 2.7417071823738315 1.0873663788478096 0.9029749472477302 0.17006107254648684 0.10074896716708286 0.56866199080377 6.441490712090546 0.024541856156245396 0.21338665504727708 44635.45493530882 -4.649679965566413 -0.18439143160007943 SAS(ph)TDLGTADVVLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASTDLGTADVVLGR 15 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 SAS(0.986)T(0.014)DLGTADVVLGR;SAS(0.987)T(0.013)DLGTADVVLGR 241.3 7.441e-18 300727000.0 608650.0 586940.0 400540.0 557620.0 625050.0 564760.0 401880.0 318780.0 610170.0 445030.0 True False 605373.0960273729 606475.9430872777 456932.55044390884 628214.6348259327 704646.412538395 525719.470502041 382439.52906931285 342568.9823320404 459801.7793591088 416627.8043906481 1.4530309538816788 1.4556780337171638 1.0967404134541854 1.5078557604784621 1.6913091375862384 1.2618444207557111 0.9179404855819971 0.8222422476893382 1.1036272051780274 1.0 18.668399597823914 2.361161330280906 4.018414238342366 0.932110417661619 1.4303852184655659 0.6818038438951706 0.15365208715332573 0.12869535091303297 3.827877967411306 0.05827065355766185 0.047728254883217656 229.7001772282621 -2.361161330280906 0.4982748008039469 SAS(ph)TLCLPSVGAARPQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASTLCLPSVGAARPQVK 18 1 Q8IUC4;Q8IUC4-2;A8MT19 Q8IUC4 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 SAS(0.707)T(0.293)LCLPSVGAARPQVK 244.72 2.212e-24 907250000.0 594790.0 292150.0 324470.0 342210.0 245720.0 393220.0 309610.0 381300.0 616920.0 408070.0 True False 591587.7167273808 301874.0361415956 370152.5556562017 385533.75091241783 277010.98550345487 366037.62694031536 294632.981474943 409754.54220216797 464888.3323044753 382026.62323369575 1.5485510190882454 0.790191096071677 0.968918219685882 1.0091803226933131 0.7251091119217624 0.9581469056841112 0.7712367765916363 1.0725811168178987 1.2169003520471684 1.0 18.54331365685709 4.747497310267311 24.906986498323466 0.9422486531508024 1.548551347810359 0.6195485555431159 0.14167405210892267 743.6922208153136 2072658.9705381156 0.0337304095638329 0.4105776684468051 55911.00648020059 -4.747497310267311 0.6063026946595566 SAS(ph)VNKEPVSLPGIMR ddPTM_BT-474_Trastuzumab_2h_R1 6 SASVNKEPVSLPGIMR 16 1 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 SAS(1)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;S(0.034)AS(0.966)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;S(0.014)AS(0.986)VNKEPVSLPGIMR 232.49 2.2338e-16 4999570000.0 4083720.0 2292758.0 2289418.0 2429605.0 1904930.0 2812063.0 2776767.0 2577936.0 4507120.0 3262121.0 True False 4061733.705263942 2369071.064028519 2611748.154422015 2737192.7438869886 2147511.5440952955 2617671.7036942793 2642444.1719299527 2770314.674813766 3396400.668313791 3053929.6449377043 1.3300023829942538 0.7757451347825155 0.8552090120187725 0.896285462379348 0.7031961419461913 0.8571486602624979 0.8652603298540804 0.9071311382061247 1.112141097927314 1.0 21.54223539568008 -0.288943415839948 8.707648541931565 0.9999999932247983 0.9044350231544297 0.00857803312615768 0.16958039603613675 0.0 0.0 0.1545050104900716 0.03641717994361364 0.5141106306125586 0.288943415839948 -0.09556497007036857 SAS(ph)VSSISLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASVSSISLTK 11 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 SAS(0.5)VS(0.5)S(0.001)ISLTK 184.43 5.1491e-06 268450000.0 370910.0 249190.0 213210.0 227280.0 201490.0 226310.0 201500.0 190050.0 334330.0 259110.0 True False 368913.06177197467 257484.13851146417 243228.1147454582 256053.62469645642 227148.55717520372 210665.7223764375 191752.6751952487 204232.49605434574 251938.8512924773 242573.37796476803 1.5208307888821853 1.0614690724588163 1.002699128759238 1.0555718308612014 0.9364117327343124 0.8684618408827828 0.790493486152876 0.8419410974439618 1.0386088259407822 1.0 17.88806170013963 7.999999949527712 0.7657769426628054 0.9006181611441106 121.10359162111975 0.8192626674829415 0.08160917377031197 165.1872901961079 0.6607102760926836 0.02951309388873457 34322.07213363296 99999988.37832695 -7.999999949527712 120.20297345997564 SAS(ph)WGSADQLK ddPTM_BT-474_Trastuzumab_2h_R1 6 SASWGSADQLK 11 0 Q86VQ1;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 SAS(1)WGSADQLK;SAS(1)WGSADQLK;SAS(1)WGSADQLK;SAS(1)WGSADQLK;S(0.2)AS(0.796)WGS(0.003)ADQLK;S(0.003)AS(0.997)WGSADQLK 247.95 3.777e-16 2042320000.0 3088150.0 2476610.0 2427580.0 2263720.0 2019700.0 3116930.0 3132530.0 2711500.0 4093820.0 3179890.0 True False 3071523.743525723 2559042.4667076385 2769362.1630963804 2550306.7198955603 2276896.8233002126 2901463.9655640023 2980997.556473314 2913845.8987180153 3084952.915377529 2976946.6977592055 1.03176981497106 0.8596198476223541 0.930269314254408 0.8566853823130982 0.76484299333074 0.9746442446376281 1.0013607427762001 0.9788035173459144 1.0362808704971511 1.0 21.50540195967174 2.5007785815917765 24.28425382013938 0.9983143695777666 0.8857811798491848 0.42520386972977486 0.06425196625112377 513.6786586302154 527291.1164630153 0.02076034819115284 0.01945475953326044 316.7951919349279 -2.5007785815917765 -0.11253318972858184 SAS(ph)WGSTDHRK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASWGSTDHRK 11 1 Q9C073;D6RJ87 Q9C073 FAM117A Protein FAM117A 1 S(0.387)AS(0.537)WGS(0.038)T(0.038)DHRK;S(0.01)AS(0.975)WGS(0.008)T(0.008)DHRK;S(0.123)AS(0.728)WGS(0.123)T(0.026)DHRK 84.29700000000003 0.009841 1236340000.0 899920.0 900470.0 778689.0 760904.0 808664.0 973044.0 1019670.0 906440.0 1341890.0 1041310.0 True False 895074.9307105121 930441.5996043903 888321.6427138781 857234.3683827559 911642.5670729525 905779.758579197 970344.6665823306 974083.1556090552 1011199.189904772 974852.704289656 0.9181642793541046 0.9544432666700898 0.9112367835725189 0.8793475820610204 0.935159294385132 0.929145248911434 0.9953756729734773 0.9992106000453047 1.0372840793846907 1.0 19.894824725253788 2.192523088033873 1.9624617960376822 1.013360428874553 0.9185022436646889 0.8134253647850733 0.02045671410975636 0.1429010437560569 1.095958543528269 0.010714164822190727 0.006658115102206828 155.78408508188957 -2.192523088033873 -0.09485818520986411 SAS(ph)WGSTDQLK ddPTM_BT-474_Trastuzumab_2h_R1 5 SASWGSTDQLK 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 SAS(1)WGSTDQLK;SAS(0.999)WGS(0.001)TDQLK;SAS(1)WGSTDQLK;SAS(1)WGSTDQLK;S(0.026)AS(0.974)WGSTDQLK 229.03 2.9755e-12 1481730000.0 2762860.0 2284340.0 2204950.0 2229320.0 2090910.0 2823830.0 2831840.0 2597160.0 4010720.0 2914080.0 True False 2747985.0687426003 2360372.8759873086 2515387.794231033 2511551.6834226707 2357174.994705471 2628625.2786808126 2694853.080520664 2790973.267311257 3022331.7968945764 2728100.919530592 1.0072886413657416 0.8652073165949609 0.9220288649233112 0.920622717965587 0.8640351160876616 0.9635366711921729 0.987812826581339 1.023046195736587 1.107851903592559 1.0 21.379465583705795 2.0650241862820593 1.5896002649390957 1.0502805705220792 0.9144925452391187 0.5892277311665337 0.04589024599930064 0.2487263793854341 1.186176355642229 0.027200457207434726 0.013985646024958954 116.15132978443258 -2.0650241862820593 -0.13578802528296052 SASDNT(ph)LVAMDFSGHAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASDNTLVAMDFSGHAGR 18 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 1 SAS(0.075)DNT(0.925)LVAMDFSGHAGR 237.14 8.584899999999998e-23 1645300000.0 55372.0 58717.0 58737.0 58868.0 56210.0 62685.0 62286.0 52347.0 68471.0 67771.0 True False 55073.88330440755 60671.35984982396 67006.65904884374 66320.68276412798 63368.01031722775 58351.73349461789 59272.98822437355 56253.39895268002 51597.239514393565 63445.79675832773 0.868046208233309 0.9562707531426878 1.056124479042792 1.0453124738389057 0.9987739701434238 0.9197099961859774 0.9342303391688991 0.8866371269156825 0.8132491378575216 1.0 15.9532369691985 2.538084198644843 2.3697666538420874 0.898086591256102 0.9904157097077384 0.2337212866013082 0.06539952921071154 0.40222088375970916 4.505835255434025 0.025554982088389848 0.022330093045466418 345.21066040803163 -2.538084198644843 0.09232911845163638 SASDNTLVAMDFSGHAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASDNTLVAMDFSGHAGR 18 0 Q14451;Q14451-3;Q14451-4;Q14451-2 Q14451 GRB7 Growth factor receptor-bound protein 7 0 ; 180.05 8.055499999999998e-14 839960000.0 564330.0 652940.0 581950.0 617310.0 635230.0 660500.0 645470.0 584740.0 796480.0 662370.0 False True 561291.7099829566 674672.7131894358 663883.5015999224 695461.3827057789 716122.7751968085 614841.1896497591 614246.1501651482 628376.2680495564 600198.1762852035 620096.9795165122 0.905167624619933 1.088011610241153 1.0706123776276903 1.1215364784521737 1.1548560932439427 0.9915242453352199 0.9905646543288665 1.013351602743654 0.9679101755231516 1.0 19.242134336591604 SASLSSLLITPFPS(ph)PNSSLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASLSSLLITPFPSPNSSLTR 21 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40;Q8TF40-2 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 SASLSSLLITPFPS(0.96)PNS(0.013)S(0.013)LT(0.013)R;SASLSSLLITPFPS(1)PNSSLTR 329.59 4.9736999999999985e-80 144594000.0 125144.0 184632.0 158479.0 158910.0 164261.0 189233.0 211076.0 180181.0 170899.0 187133.0 True False 124470.23860880545 190777.3645075989 180791.46567583812 179027.9897065906 185178.66469877513 176151.76811656763 200865.44749137663 193627.02116057894 128783.23137927524 175190.01172737812 0.7104870727590324 1.0889739810308194 1.0319735919487047 1.0219075159672055 1.057016109953465 1.0054897900839583 1.146557646242717 1.1052400719162663 0.7351060149461102 1.0 17.418560997993723 4.744505929511238 24.747247253689814 1.034591702378539 0.7104869084645085 0.4306928569098507 0.1062500761133803 514.0146721995554 2139506.3141053487 0.02444012328051154 0.2211773554175274 55527.219831251154 -4.744505929511238 -0.32410479391403046 SASNKS(ph)PLVLEANR ddPTM_BT-474_Trastuzumab_2h_R1 2 SASNKSPLVLEANR 14 1 Q92560;F8W6N3 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 S(0.001)AS(0.119)NKS(0.88)PLVLEANR;SAS(0.013)NKS(0.987)PLVLEANR 151.58 4.1779e-06 1146550000.0 688130.0 601740.0 587990.0 500600.0 502090.0 744590.0 681240.0 650500.0 880550.0 662400.0 True False 684425.1845384304 621768.5521404888 670773.8810993013 563975.9086723259 566028.185379414 693118.2458763269 648285.8186104778 699043.6131720692 663550.2512654893 620125.0648908289 1.1036889545158464 1.00265025128431 1.0816751637307047 0.9094551093038178 0.9127645654494896 1.1177071934648348 1.045411410236428 1.1272623100553654 1.070026497610293 1.0 19.242199677520574 2.7112613602396687 24.879359218499495 1.08152750680628 1.0013601222032915 0.20902897959084277 0.0668603738350437 1011.0571377062345 921432.724282454 0.022017470034926455 0.020763345267896468 514.353098310527 -2.7112613602396687 -0.08016738460298845 SASPS(ph)NIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASPSNIK 8 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 SAS(0.397)PS(0.603)NIK 96.171 0.009577 84024000.0 248960.0 232700.0 224610.0 219030.0 206110.0 242470.0 245140.0 243400.0 349620.0 268820.0 True False 247619.62702205635 240445.27882987936 256233.13565488215 246759.1755423483 232356.88679031856 225708.61961298564 233281.64167425947 261563.7439601564 263460.8356679803 251663.67745161906 0.983930734579923 0.9554230521649419 1.0181570032256306 0.9805116814673678 0.9232833643026928 0.8968660948554121 0.9269579306656462 1.0393384798664105 1.0468766821490527 1.0 17.941137482187795 1.6924539116956887 7.225197407708421 1.0319238289725297 0.9550931671276764 0.48528552127829905 0.03465194913485029 0.11513279012235286 12.35185983434898 0.01923325986132714 0.009976994980605254 49.255406963351774 -1.6924539116956887 -0.07683066184485321 SASQS(ph)S(ph)LDKLDQELK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 S(0.102)AS(0.112)QS(0.898)S(0.888)LDKLDQELK;SAS(0.254)QS(0.751)S(0.995)LDKLDQELK 182.35 6.5792e-06 506320000.0 2444330.0 1301088.0 1026713.0 993595.0 1100113.0 1931440.0 1694890.0 1782770.0 3099070.0 1780240.0 True False 2431169.9988705907 1344393.9275556956 1171265.2660506251 1119384.025124409 1240205.8696693878 1797924.0989207106 1612901.695591442 1915809.3501226285 2335345.7239104426 1666623.5590598546 1.4587397289895614 0.8066572203707901 0.7027773366598382 0.6716477869518751 0.7441427687299645 1.078782361587954 0.9677660482018404 1.149515341786804 1.4012436769031487 1.0 20.668496848329465 2.0300167054763265 1.5056672141550833 1.203898707168525 0.865026144453583 0.21140407527440597 0.23495127743531527 0.5714756574584755 2.4252175460478753 0.1563627209665555 0.07690920605353861 107.15605228570115 -2.0300167054763265 -0.33887256271494204 SASQS(ph)SLDKLDQELK ddPTM_BT-474_Trastuzumab_2h_R1 2 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 SASQS(0.5)S(0.5)LDKLDQELK;SAS(0.129)QS(0.61)S(0.261)LDKLDQELK 206.74 2.268e-09 1800610000.0 1214160.0 805280.0 708190.0 640270.0 676570.0 1057650.0 1146050.0 984450.0 1541200.0 990360.0 True False 1207623.0974658562 832083.2579979594 807896.9963021716 721328.1163516387 762727.1791554315 984537.1449402989 1090611.1831638466 1057914.6579358105 1161391.9110219416 927154.3769101452 1.3025048767934497 0.897459235182579 0.8713726822868342 0.77800216912695 0.8226539162736983 1.0618912766408857 1.1762994495031573 1.141033989896526 1.2526413507235132 1.0 19.822450050892407 2.5115688271850574 4.812874003142759 1.1511531270507271 0.9206320824909188 0.3104102349987041 0.14590299733593481 0.22726207614674648 12.921009396994979 0.04994829448916161 0.04515540176773189 324.76470694661435 -2.5115688271850574 -0.23052104455980837 SASQS(ph)SLDKLDQELKEQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 SASQS(0.727)S(0.273)LDKLDQELKEQQK 172.8 3.9922e-12 331690000.0 301590.0 244150.0 198040.0 188750.0 184990.0 386930.0 377640.0 279930.0 645970.0 291220.0 True False 299966.27294979873 252276.38515820823 225922.3106054618 212645.73064702636 208547.3799783661 360182.4398352476 359372.11047510605 300819.79805573757 486779.3490545315 272634.09027401404 1.1002522562322055 0.9253295686707959 0.8286649346690136 0.7799675030855617 0.7649350811879877 1.3211203319190277 1.318148108748671 1.103382917937354 1.7854676521387634 1.0 18.056606443015276 2.7315204504106894 24.752422672102625 1.2955576040421117 0.8739672220373794 0.5058639048011198 0.21025706590713653 402.335430937959 1414562.3269915825 0.06556436780621375 0.06304816798375916 538.9152216527218 -2.7315204504106894 -0.4215903820047323 SASQSS(ph)LDKLDQELK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 SASQS(0.148)S(0.851)LDKLDQELK;SASQS(0.211)S(0.789)LDKLDQELK;SASQS(0.188)S(0.812)LDKLDQELK 288.98 2.9713999999999997e-36 1434380000.0 2140050.0 1296080.0 1239040.0 1079040.0 1187810.0 1978220.0 2040960.0 1854070.0 3016800.0 1857360.0 True False 2128528.2085819067 1339219.2393030936 1413486.062071257 1215646.353363536 1339070.5627985457 1841470.3076289871 1942230.9675756588 1992430.1181766961 2273350.0630489206 1738821.6946341007 1.2241210327375238 0.7701877906376736 0.8128987960256018 0.699120765007101 0.7701022864683809 1.0590334324167072 1.11698109907949 1.1458507357742407 1.3074083846919684 1.0 20.72967857013665 2.5627945460002004 3.6258647541703684 1.1486003412040036 0.8403828829676016 0.45025828586573113 0.1507679688964366 0.21067861370818175 5.219903103730184 0.0515879642168577 0.047193392496561945 365.42187864475676 -2.5627945460002004 -0.308217458236402 SASS(ph)DTSEELNSQDSPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSDTSEELNSQDSPPK 18 0 O14745;O14745-2;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 SAS(0.085)S(0.691)DT(0.223)SEELNSQDSPPK 502.2 7.931599999999991e-267 169100000.0 138800.0 108940.0 98043.0 92579.0 95584.0 133290.0 119810.0 129780.0 152450.0 134320.0 True False 138052.71622212976 112566.00204437935 111846.60219496714 104299.49190766137 107756.05582924554 124075.97603091033 114014.3325813536 139464.84260948678 114880.7402253407 125747.58260286249 1.0978558264466165 0.8951742825934605 0.8894532990602484 0.8294353636766225 0.8569234779610992 0.9867066504393055 0.9066920430704026 1.1090856756264358 0.913582097145823 1.0 16.940171140070916 1.775911827750273 24.999999999959268 1.0184937757505048 0.9170928815576196 0.1705003607586597 0.08350655294180447 66.44571537268645 44492.11431735923 0.03827791562056573 0.02124886293865669 59.69140863311338 -1.775911827750273 -0.10140089419288523 SASS(ph)GAEGDVSSER ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSGAEGDVSSER 14 0 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 S(0.009)AS(0.041)S(0.95)GAEGDVSSER 62.162 0.083111 101010000.0 111420.0 122310.0 98786.0 112420.0 96538.0 115120.0 102560.0 115260.0 128390.0 116660.0 True False 110820.12709992562 126381.0144120437 112694.21013669543 126652.36047331759 108831.54207444447 107162.02536333125 97598.78098275299 123861.28647842092 96750.00483785827 109214.65892234896 1.0147001162061784 1.157179957883675 1.0318597452821825 1.1596644784045587 0.9964920748580383 0.9812055123435663 0.89364176884117 1.1341086233349467 0.8858701367794136 1.0 16.73680698394765 3.1531129175440307 9.883148284310506 0.9920350337245765 1.09128605815227 0.3182298445372602 0.07729368068681679 0.43785886745000796 46.94787734475942 0.02166233930176486 0.025915506083561298 1422.6986438925771 -3.1531129175440307 0.09925102442769362 SASS(ph)GAEGDVSSEREP ddPTM_BT-474_Trastuzumab_2h_R1 2 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 SAS(0.205)S(0.795)GAEGDVSSEREP;S(0.001)AS(0.297)S(0.702)GAEGDVSSEREP 271.45 9.8822e-35 2526100000.0 1686390.0 1847870.0 1763140.0 1772760.0 1805480.0 1946580.0 1848220.0 1670040.0 2063420.0 1990160.0 True False 1677310.6636155422 1909375.2358889969 2011374.7865123916 1997191.2342348236 2035397.1760816267 1812017.5063564398 1758814.5377139614 1794666.8650912882 1554917.7894114302 1863146.2849383005 0.9002570958463885 1.0248123034269567 1.0795581660830245 1.071945477593544 1.092451619357967 0.9725578291972099 0.9440023856055972 0.9632452800938923 0.8345655958318499 1.0 20.82930952125791 2.5171506717428183 4.948067235563063 0.9379805842197806 1.0380720885852301 0.3490854427721658 0.0634581637491006 0.22943497740364122 13.523146989657329 0.021691561183500026 0.019730625232390067 328.9657406482223 -2.5171506717428183 0.10009150436544956 SASS(ph)GLGEFNAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSGLGEFNAR 12 0 Q86YS3-2;Q86YS3 Q86YS3-2 RAB11FIP4 Rab11 family-interacting protein 4 1 SAS(0.233)S(0.767)GLGEFNAR 111.72 0.00027873 0.0 63069.0 66259.0 78990.0 70421.0 85680.0 78529.0 75324.0 79167.0 89883.0 89584.0 True False 62729.44351162464 68464.39076058872 90111.105406612 79336.29137957218 96590.84013485275 73100.47506738208 71680.2903543769 85074.84354188053 67732.53902049389 83866.6724232789 0.7479662862385466 0.8163480054990836 1.0744566679814975 0.9459811518353599 1.1517190004553228 0.8716272263485151 0.8546933875306657 1.014405854956352 0.8076216339983622 1.0 16.355809994959515 4.40815980850051 6.597437334124029 0.9646672624984057 0.7642810107047597 0.3642448654373044 0.09842957933688101 0.185542635265449 13.716634949093564 0.02344463632009617 0.06596866438571022 25595.27549830937 -4.40815980850051 -0.200386251793646 SASSASSLFS(ph)PSSTLFSSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSASSLFSPSSTLFSSSR 20 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 SASSAS(0.001)S(0.003)LFS(0.937)PS(0.021)S(0.014)T(0.014)LFS(0.004)S(0.004)S(0.004)R 84.208 0.0029605 64365000.0 26450.0 29231.0 25084.0 27566.0 29914.0 31007.0 25750.0 26298.0 39818.0 34008.0 True False 26307.596138871246 30203.93616448736 28615.609165963473 31055.852773594353 33723.37058583083 28863.559072626904 24504.374125447444 28260.49029853817 30005.387433864307 31837.580324286348 0.8263063923486447 0.9486881809748333 0.898799747797885 0.975446389369745 1.0592315823732987 0.9065877110833451 0.7696682309350945 0.8876456693846329 0.9424518800813387 1.0 14.958443073885697 2.4838173099015766 24.971420499247973 0.8799688539183969 0.9457085248509989 0.03866484784040791 0.07795817574260576 636.0805578345019 2372129.006087585 0.02664259525357479 0.02306611095573816 304.66131332853473 -2.4838173099015766 0.06573967093260202 SASSGAEGDVSS(ph)EREP ddPTM_BT-474_Trastuzumab_2h_R1 1 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 SASSGAEGDVS(0.023)S(0.977)EREP 167.41 1.6671e-08 433590000.0 415480.0 455200.0 381580.0 403000.0 416630.0 426850.0 427230.0 432640.0 514810.0 442730.0 True False 413243.1018441675 470351.05682578875 435303.147247183 454019.75867947855 469685.36094051966 397342.86419681984 406563.25272290874 464925.7937014056 387941.9736005749 414474.59235977725 0.9970287912979217 1.1348127617374166 1.0502529112069816 1.0954103509567477 1.1332066418508415 0.9586663972201063 0.9809123652385399 1.1217232666890111 0.9359849330977297 1.0 18.66092414045209 2.7421009841599617 24.999461229897285 1.0148632005812914 1.084033909143053 0.30613417056373105 0.06000786035055131 472.83780993236337 3338847.5837970152 0.018856290476193565 0.019255228528400364 552.2058258042209 -2.7421009841599617 0.06917070856176166 SAST(ph)DLGTADVVLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SASTDLGTADVVLGR 15 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 SAS(0.362)T(0.638)DLGTADVVLGR 255.91 1.0865999999999999e-23 279860000.0 554890.0 540850.0 403870.0 524700.0 602400.0 550110.0 338300.0 322720.0 560980.0 400820.0 True False 551902.5338940747 558851.8652992704 460731.3854990299 591126.9662012965 679112.0692954626 512082.1905196503 321935.1365684996 346803.00513895525 422733.99574687885 375239.3244407332 1.4708014271069407 1.4893211582559964 1.227833426535762 1.5753332012371788 1.809810499759399 1.3646815703094857 0.8579461575577678 0.924218179040376 1.1265716789596427 1.0 18.51745150219084 2.3578802672829537 4.926068824105178 0.9640316921334305 1.507957135216794 0.7458910762238203 0.14821233573942358 0.10764613937348522 4.195658287483847 0.05574194827507076 0.04607054642547341 227.9713480272399 -2.3578802672829537 0.5439254430833634 SAST(ph)LCLPSVGAARPQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SASTLCLPSVGAARPQVK 18 1 Q8IUC4;Q8IUC4-2;A8MT19 Q8IUC4 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 SAS(0.373)T(0.627)LCLPSVGAARPQVK 237.76 1.1884e-23 1104000000.0 481650.0 259810.0 226920.0 262970.0 223490.0 325240.0 250120.0 239980.0 502870.0 342830.0 True False 479056.8499163461 268457.6187915382 258868.3635760021 296261.97503707866 251950.12677098814 302756.92433260765 238020.74004881218 257888.5261937483 378944.4266127717 320950.29588846996 1.4926200600320307 0.836446085984688 0.8065683904711486 0.9230774323387118 0.785012913209903 0.9433140527086957 0.741612464914269 0.803515464847443 1.180695052994918 1.0 18.291990365468298 4.740546491653433 24.906183585429265 0.8717619248372864 1.4926202830490207 0.6762577116103244 0.12420021722805075 89.64859054182875 1124256.522395916 0.02809157763385555 0.1834783513750235 55023.28203251416 -4.740546491653433 0.6208583582117343 SASYKPVFVTEITDDLHFYVQDVETGTQLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SASYKPVFVTEITDDLHFYVQDVETGTQLEK 31 1 Q7KZF4;H7C597 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;; 466.11 5.229399999999996e-246 1773720000.0 970306.0 837815.0 822850.0 776217.0 798733.0 1053712.0 1018010.0 978881.0 1424180.0 1017471.0 False True 965081.9803071315 865701.1658051373 938700.1276595863 874485.9926126787 900446.9130886002 980871.3696112443 968764.9671241445 1051930.0708770012 1073209.9220342785 952535.1296792511 1.0131720607848924 0.9088390956212254 0.9854755991788738 0.9180616707618394 0.9453162251263209 1.0297482361007881 1.017038571008251 1.1043477957933368 1.1266880229348206 1.0 19.861412774895225 2.335312322285217 1.5992761005210527 1.0828676155945671 0.9517715672207601 0.5667947438797187 0.044773651183954724 0.23984333375638764 1.2366860404515991 0.021700621627684023 0.014560194471960467 216.4274399193867 -2.335312322285217 -0.13109604837380706 SAT(ph)FPNAGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SATFPNAGPR 10 0 Q86X27;Q86X27-3 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 S(0.016)AT(0.984)FPNAGPR 124.06 0.0049808 177190000.0 186610.0 102450.0 117900.0 115750.0 67872.0 117120.0 148220.0 92688.0 137410.0 122780.0 True False 185605.31249431998 105859.98631766718 134499.29519482897 130403.93813188522 76515.09689113827 109023.77007082471 141050.0323446144 99604.84922012719 103547.14669966594 114944.07528275347 1.614744492378101 0.9209694893561052 1.1701281241679589 1.1344989971088262 0.6656723863576012 0.9484940376668805 1.227118770564227 0.8665505288124422 0.9008480554125824 1.0 16.810572579636222 6.653119239835076 1.5077098752552716 0.9745918431558707 199.97430244807555 0.5727921065294059 0.16072442594638858 333.33081095388997 3.1059559818872797 0.042736826279532396 227290.3919058851 4499033.6334476415 -6.653119239835076 198.99971060491967 SAT(ph)PEPVTDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SATPEPVTDNR 11 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 SAT(0.999)PEPVTDNR;S(0.006)AT(0.994)PEPVT(0.001)DNR 165.09 0.0025744 364350000.0 816530.0 868950.0 661340.0 711680.0 688380.0 790560.0 883400.0 709690.0 1282170.0 804960.0 True False 812133.8932050114 897872.4754586319 754450.9235296714 801778.6150298059 776041.112652076 735910.4479780676 840666.5670842817 762650.6715328 966196.3836977708 753586.7636390716 1.0776912923512822 1.191465294749611 1.0011467291256906 1.063949970615216 1.0297966340392872 0.9765437551269543 1.115553785770734 1.0120276898839873 1.2821302473944831 1.0 19.523414099419387 -1.049626330985555 4.842355813390197 0.9999981137175066 1.075478291228162 0.06698161713021855 0.08906619839340016 1.706613438906887e-06 3.349789342228276e-07 0.081113044830439 0.019118049980041473 0.08920181046214112 1.049626330985555 0.07548017751065539 SATDGNTST(ph)TPPTSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAX4;Q13620-1;K4DI93;Q13620;A0A669KAU9 A0A669KAX4 CUL4B Cullin-4B 1 SATDGNT(0.017)S(0.101)T(0.592)T(0.29)PPTSAK 185.26 1.8891e-08 263490000.0 545580.0 459660.0 439040.0 398490.0 427730.0 641600.0 619570.0 552910.0 798600.0 687210.0 True False 542642.6578996358 474959.5052296626 500853.0157959099 448938.7931418999 482198.88014566485 597247.7021639443 589599.0321127563 594170.9518200911 601795.7306917493 643351.6694499194 0.8434619566054875 0.7382579820392228 0.7785058150609151 0.6978124320805028 0.7495105756979789 0.9283378446419591 0.9164490590610842 0.9235554674601546 0.9354071175509634 1.0 19.295248034823043 2.735748463566853 22.610655502672852 0.933045070952677 0.757623457108928 0.827214190257959 0.04086404370249658 25.602565327483042 205851.68229277333 0.012574597533042532 0.012365577115971879 544.1873769056533 -2.735748463566853 -0.175421613843749 SATDGNTSTT(ph)PPTSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAX4;Q13620-1;K4DI93;Q13620;A0A669KAU9 A0A669KAX4 CUL4B Cullin-4B 1 SATDGNT(0.007)S(0.321)T(0.184)T(0.486)PPT(0.002)SAK 135.47 0.00025387 233850000.0 485690.0 414430.0 377340.0 356740.0 358840.0 577460.0 539570.0 454130.0 716720.0 596700.0 True False 483075.0990052313 428224.0520217746 430466.192101924 401903.24742262403 404536.1469886856 537541.5493946249 513468.93774243403 488019.4866254144 540093.9595559606 558618.0951394277 0.8647680825388563 0.7665774806576798 0.7705912068503299 0.7194597721047891 0.7241730092680149 0.9622702058379576 0.9191770589069 0.8736191879061986 0.9668393563605497 1.0 19.091502781576146 2.7365948248547056 24.99886540014025 0.9293628359828535 0.7662965041496569 0.7562875523022043 0.0493673458873475 94.85740715137705 1206288.904166931 0.01609451179363593 0.015897470765749686 545.2489335974714 -2.7365948248547056 -0.16306633183319663 SATEYKNEEYQR ddPTM_BT-474_Trastuzumab_2h_R1 3 SATEYKNEEYQR 12 1 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 ;; 107.17 0.0016811 554820000.0 296607.0 319367.0 279569.0 288023.0 275977.0 318760.0 329285.0 300337.0 465050.0 351658.0 False True 295010.1008681359 329996.9375335715 318929.88514269 324486.68226833676 311121.03510616533 296724.8714803287 313356.2265591441 322749.6720203839 350444.6588507363 329214.8853704392 0.8961019503604298 1.00237550669148 0.9687590060936146 0.9856379425347607 0.9450393919949448 0.9013106170653489 0.9518288524729049 0.9803617222751622 1.0644860679868984 1.0 18.328670042774153 1.4519708032438938 4.09568234968011 1.0317329768380463 0.9528076059257886 0.4666816567521592 0.03453254157892733 0.18101411501798184 5.765308756661512 0.023904746072763834 0.008860441050578047 28.31201653333001 -1.4519708032438938 -0.07892537091225771 SATLSGS(ph)ATNLASLTAALAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SATLSGSATNLASLTAALAK 20 0 Q9NQT8;H0YBA8;Q9NQT8-2 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 SATLSGS(0.998)AT(0.002)NLASLTAALAK;SATLSGS(0.959)AT(0.041)NLASLTAALAK 296.75 1.2643e-54 437320000.0 575740.0 334170.0 318400.0 329720.0 318210.0 436400.0 330600.0 381080.0 708500.0 438960.0 True False 572640.2798107278 345292.6464399689 363227.9524175876 371462.518193047 358732.15732156305 406232.6951751023 314607.61498535646 409518.12468503055 533899.6684136033 410945.1969874367 1.393471158705949 0.8402401317042892 0.883884165286137 0.9039222770242118 0.8729440323219793 0.9885325297706826 0.7655707313084245 0.9965273415704388 1.2991991932927387 1.0 18.648586485603758 1.447575037716006 13.5216458588465 1.1491272674772628 0.9357307778250926 0.16703920088990032 0.1740085624235125 0.7710412293127794 347.8170402189583 0.09079048046784405 0.04086836315313312 28.02689830619048 -1.447575037716006 -0.21339648965217017 SATREPPYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SATREPPYR 9 1 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;; 125.48 0.0014906 147151000.0 215525.0 308027.0 276028.0 300737.0 306418.0 229131.0 290566.0 255748.0 295128.0 298212.0 False True 214364.6373470788 318279.49248874636 314890.34312161367 338810.2733647405 345438.51601822244 213291.71328635685 276510.212510088 274833.21442203014 222397.65891258977 279179.85484786157 0.76783705423121 1.1400517872687914 1.1279121242226178 1.2135914088406357 1.2373332460054052 0.763993925717132 0.9904375538155201 0.9844306802573556 0.7966106975511713 1.0 18.090835317275054 2.7434233093200717 24.989092683860147 0.9196195344238582 1.107874004931783 0.30828943663149844 0.14143025135270373 531.9014485001951 2733415.18953697 0.04402982215917571 0.04535122455828488 553.8897256788606 -2.7434233093200717 0.18825447050792476 SATRPS(ph)PS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 7 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 SAT(0.004)RPS(0.995)PS(1)PER;S(0.159)AT(0.011)RPS(0.835)PS(0.995)PER;S(0.077)AT(0.085)RPS(0.839)PS(1)PER;S(0.007)AT(0.009)RPS(0.984)PS(1)PER;S(0.002)AT(0.003)RPS(0.995)PS(1)PER;S(0.176)AT(0.046)RPS(0.79)PS(0.989)PER;S(0.003)AT(0.004)RPS(0.993)PS(1)PER 120.9 0.005056399999999999 22623961000.0 3072241.0 3130541.0 2656819.0 2798718.0 2922706.0 3247029.0 3197564.0 2877034.0 3456179.0 3074612.0 True False 3055700.395814064 3234739.1647330015 3030876.0217152704 3153035.411840978 3294895.284864317 3022569.5279141054 3042885.6134393085 3091732.8863626346 2604449.99587588 2878387.629852232 1.0616014202266895 1.123802482745892 1.0529770175085371 1.0954172325993652 1.144701724914468 1.0500912026464189 1.0571493505186864 1.0741197100410536 0.904829484696467 1.0 21.45682946091879 1.2937635102582694 8.008608717623355 0.9528962195621854 1.0829356486198884 0.669820470820026 0.03652759269033178 0.11957171194863232 15.198854871066883 0.02393419653613917 0.008641631505512835 19.66814993033823 -1.2937635102582694 0.13003942905770305 SATRPS(ph)PS(ph)PERS(ph)STGPEPPAPTPLLAER ddPTM_BT-474_Trastuzumab_2h_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.001)AT(0.003)RPS(0.997)PS(1)PERS(0.852)S(0.121)T(0.027)GPEPPAPTPLLAER 115.45 0.00023454 958380000.0 357260.0 334140.0 284560.0 313260.0 331900.0 400040.0 355270.0 358110.0 462560.0 423700.0 True False 355336.5518553177 345261.64790810476 324623.57456014067 352918.68388072844 374165.4976745753 372386.17639286834 338084.23283680424 384833.98664573376 348568.28598644526 396659.10325218 0.8958235143021764 0.8704241124868405 0.8183943640737724 0.889727932592932 0.9432923500477333 0.9388065806121689 0.8523294437588234 0.9701882132302198 0.8787603338195406 1.0 18.597540133385138 -4.999999999723162 0.06879041990927884 1.369682549464678 0.762573305939399 0.40345995393275236 0.04112690011572961 304.83012698375614 1.5132607001746938 17.873067904685627 2.311351547303234 1.0000000006374434e-05 4.999999999723162 -0.6071092435252791 SATRPS(ph)PS(ph)PERSS(ph)TGPEPPAPTPLLAER ddPTM_BT-474_Trastuzumab_2h_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.047)AT(0.258)RPS(0.697)PS(0.998)PERS(0.329)S(0.572)T(0.1)GPEPPAPTPLLAER 147.51 5.2545000000000005e-08 1309300000.0 417150.0 428520.0 362420.0 418260.0 436400.0 449710.0 445360.0 427050.0 529640.0 473840.0 True False 414904.1107497221 442783.0291541893 413445.58578888874 471211.6731148356 491972.9532545493 418622.60620347154 423816.23535958334 458918.6395159605 399117.3188123938 443599.1255251658 0.9353131845301264 0.998160284085298 0.9320252498230716 1.062246623135201 1.1090485191378927 0.9436957426547556 0.9554036763662191 1.03453459014974 0.8997252155082337 1.0 18.758896995928882 5.018792182386866 1.2784540585645017 0.9989009603167875 0.8749121855392461 0.06960594888544269 0.060464887708172994 7.3411167000390725 6.534343214299843 0.01698916844501364 1.4109970111264936 104422.0421655126 -5.018792182386866 -0.12398877477754144 SATRPSPS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SATRPS(0.008)PS(0.992)PER;SATRPS(0.005)PS(0.995)PER 104.95 0.0015325999999999998 1178080000.0 530820.0 619060.0 629580.0 472670.0 390700.0 484680.0 544100.0 430560.0 789120.0 500230.0 True False 527962.1240996459 639665.0378703282 718219.3915925407 532509.9735360536 440453.32913967007 451175.21241399716 517779.80433615396 462690.57353937975 594651.9496662574 468304.8931315507 1.1273897237527624 1.3659157682357186 1.533657670732018 1.137101024025532 0.9405268567542878 0.9634219480326001 1.1056467953468625 0.9880114009601138 1.2697965756663891 1.0 18.837088586699164 3.516921475757703 8.335871017177906 1.0403821419797694 1.3438617934971613 0.5247038798052137 0.1267046597179724 0.243249726636843 47.3019660468913 0.0333493717168791 0.051056647411104265 3287.921769988031 -3.516921475757703 0.30347965151739187 SATTT(ph)PSGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP60;A0A096LP25;Q2M2I8;Q2M2I8-2 A0A096LNZ0;A0A096LP25;Q2M2I8 AAK1 AP2-associated protein kinase 1 2 SATT(0.003)T(0.996)PS(0.002)GS(1)PR 139.77 0.0030847 0.0 186710.0 203580.0 171590.0 197810.0 185960.0 169020.0 196810.0 177190.0 195710.0 187300.0 True False 185704.77410543128 210356.03723329125 195748.3805129835 222852.72571808388 209640.9037287258 157336.04523028352 187289.54841278872 190412.81755258894 147479.89287964193 175346.35364440258 1.0590740568351669 1.1996601746272255 1.1163527295808824 1.2709287708943344 1.1955817692900053 0.8972872372889861 1.0681120224068452 1.0859240217720223 0.8410776147574016 1.0 17.419847904264294 2.755990555006578 24.78622061313723 0.9996767080134951 1.1728741331381212 0.5399843205619906 0.08645944167962108 630.5041324542091 896606.6310645707 0.026587043743393463 0.02813967573153432 570.1518725394027 -2.755990555006578 0.1731974251246261 SATTTGS(ph)PGTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SATTTGSPGTEK 12 0 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 SATTT(0.001)GS(0.999)PGTEK;SATTT(0.486)GS(0.514)PGTEK 306.21 3.8699e-37 425580000.0 897540.0 798100.0 722550.0 660750.0 676240.0 792280.0 877270.0 835800.0 1153550.0 903450.0 True False 892707.744366069 824664.2760383617 824278.7594828133 744400.8822517765 762355.1556114941 737511.5484265112 834833.0986031562 898171.6401064036 869273.0592780696 845791.0475175409 1.0554707891343047 0.9750212874194072 0.9745654815124046 0.8801238608952507 0.9013516492626196 0.8719784284678374 0.9870441417575333 1.061930890309851 1.027763372323992 1.0 19.689941764325397 2.000054890258012 24.999918655605786 1.0337063600811573 0.9402341338579662 0.3563921327312761 0.05236436762367163 2.0427772818238155 929917.7944979907 0.02126581850490838 0.015552115439392616 100.01263974773376 -2.000054890258012 -0.09347222622319118 SATTTPSGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP60;A0A096LP25;Q2M2I8;Q2M2I8-2 A0A096LNZ0;A0A096LP25;Q2M2I8 AAK1 AP2-associated protein kinase 1 1 SATTTPS(0.067)GS(0.932)PR;SATTTPSGS(1)PR 224.49 6.4731e-12 193030000.0 185595.0 248890.0 232073.0 262222.0 248081.0 213960.0 246142.0 202948.0 240000.0 228918.0 True False 184595.77714154296 257174.15319281784 264746.86118532304 295419.27831377287 279672.6448587113 199169.4488076645 234235.17110624805 218093.01030906278 180855.21583523616 214308.25725343995 0.8613563448618821 1.2000198055303342 1.2353553921734086 1.3784782821709542 1.3050017224859969 0.9293596586534117 1.0929824828412589 1.0176603230511412 0.8439022282811885 1.0 17.709327912267835 2.732890414357419 24.786059868482628 0.9908521412610329 1.2085826744438715 0.37646438901979584 0.14004498159497203 477.93918847854195 2089201.3525604142 0.0464784054922703 0.044935319439979485 540.6178914765017 -2.732890414357419 0.21773053318283853 SAVADKHELLSLASSNHLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAVADKHELLSLASSNHLGK 20 1 A0A087WZK9;B3KS98;O15372;E5RJT0 A0A087WZK9 EIF3H Eukaryotic translation initiation factor 3 subunit H 0 280.81 6.381600000000001e-45 458980000.0 646820.0 1016100.0 1052800.0 1039900.0 1106000.0 1380600.0 1310300.0 1135900.0 1482900.0 1434100.0 False True 643337.5929884586 1049920.2742545796 1201025.0888983542 1171551.2333766518 1246842.5442244068 1285162.3715828252 1246915.7831679124 1220666.6259833276 1117459.164841965 1342574.5102052188 0.47918204025050454 0.7820201160337048 0.8945686662223103 0.8726154298859544 0.9286952305044293 0.9572372794314277 0.9287497816246455 0.9091984219160716 0.8323256224126855 1.0 20.356570726451523 4.961956656777541 1.3642043942537254 0.9180864294716745 0.08435096432316713 0.9082823377733714 0.04219512661077099 0.5568787678188615 0.6261118171167698 0.011158889449449295 0.7373888795359697 91612.90545440897 -4.961956656777541 -0.8337354651485074 down SAVCIADPLPTPS(ph)QEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAVCIADPLPTPSQEK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 SAVCIADPLPT(0.002)PS(0.998)QEK 156.5 1.6482e-07 44512000.0 121140.0 99400.0 96590.0 86644.0 88047.0 118910.0 115550.0 107730.0 169330.0 123050.0 True False 120487.79569991933 102708.46891143109 110189.03242466964 97613.12151619047 99259.26355454462 110690.0315840315 109960.40505613403 115769.35964185563 127600.89040575233 115196.84365159494 1.0459296616175224 0.8915909989866206 0.9565282253559734 0.8473593409504756 0.8616491598914597 0.960877295551656 0.9545435584042722 1.0049698930292936 1.1076769671890716 1.0 16.81374166247941 1.727884295026853 1.8782130402709796 1.0537505784186258 0.9210795623471139 0.42109211554656634 0.05883814285781983 0.28884041605768185 2.06187912881332 0.041857824050629024 0.01690226390186258 53.44219594382596 -1.727884295026853 -0.132671016071512 SAVDEDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SAVDEDRK 8 1 A0A0A0MTN0;Q13617;Q13617-2 A0A0A0MTN0 CUL2 Cullin-2 0 78.113 0.050455 305740000.0 214790.0 188250.0 184450.0 191250.0 190050.0 234380.0 220350.0 213280.0 277520.0 226330.0 False True 213633.59450541218 194515.78745047213 210418.95673185965 215462.2303906958 214251.74098539646 218177.8622711738 209690.82868125598 229196.03661389538 209128.91457747802 211885.42562913816 1.0082505385685838 0.9180234406066795 0.9930789534347433 1.0168808437434393 1.0111679005256362 1.0296973547064499 0.9896425299599257 1.0816979786757768 0.9869905584894506 1.0 17.692924830926078 3.945443204386205 3.922384573690209 1.0218942577933923 0.961397403810406 0.2842637834138242 0.03271485604493379 0.2216967839674056 6.915893534499665 0.008224566291373445 0.016639227960998513 8819.484562561824 -3.945443204386205 -0.06049685398298632 SAVDQAGGAQIVIDHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SAVDQAGGAQIVIDHLR 17 0 P52306-4;P52306;P52306-5;D6RHH8;D6REZ0 P52306-4 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 0 58.56399999999999 0.093413 189230000.0 43693.0 47017.0 52525.0 54964.0 42209.0 43098.0 56370.0 42459.0 60439.0 51410.0 False True 43457.761742748684 48581.932422623315 59920.06344451571 61922.4367644141 47584.065957656385 40118.73670177941 53643.16774568825 45627.506182433404 45544.61829110768 48128.96978568461 0.9029439428324244 1.009411434297383 1.2449895294109998 1.2865938548061795 0.9886782569738216 0.8335673271301197 1.1145712859543437 0.948025822817524 0.9463036190866979 1.0 15.554617921884212 3.033000362140192 24.99995917090501 0.9695784599916094 1.1163431766999208 0.2448322275519994 0.11998435745541818 278.89569028518196 211280.18082544152 0.03657639389390017 0.04371693869511378 1078.9476219192154 -3.033000362140192 0.14676471670831137 SAVENCQDSWR ddPTM_BT-474_Trastuzumab_2h_R1 4 SAVENCQDSWR 11 0 P52209-2;P52209 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 320.73 1.1155999999999997e-45 6551170000.0 1997280.0 2235430.0 2183000.0 2204120.0 1883240.0 2289130.0 2298870.0 2006930.0 2286280.0 2102560.0 False True 1986526.8663986705 2309834.9362040283 2490347.425023848 2483161.3660064866 2123059.4511619997 2130887.831132404 2187664.875563783 2156697.3075840482 1722856.9285824324 1968372.8207078225 1.0092228695193626 1.1734743092893434 1.265180761908877 1.261530000761516 1.0785860426575857 1.082563124584367 1.1114077844140846 1.0956752119796618 0.8752696188737746 1.0 20.908572070309074 1.4005386412796657 3.7825104812529475 0.939528677757929 1.1442636551855903 0.48813336027803633 0.08100982830465281 0.19495129344979703 4.638091382831145 0.0644187865456994 0.022059852554383086 25.150037750856 -1.4005386412796657 0.20473497742766122 SAVGHEYQSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SAVGHEYQSK 10 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;;;; 201.09 2.4825e-07 6556190000.0 9034000.0 9746600.0 9576100.0 8921400.0 8731500.0 10554200.0 10905400.0 9561700.0 12256600.0 10321900.0 False True 8985361.947771756 10071009.689055873 10924331.643046677 10050848.325268252 9843404.769344848 9824612.995914422 10377864.139326392 10275242.607328795 9236125.160025656 9663147.504976824 0.9298587176842755 1.042208005607799 1.1305148387127801 1.0401215877219872 1.0186540942560574 1.0167094097295357 1.0739631299202943 1.0633432431862107 0.9558091869412904 1.0 23.204061753230548 1.239886084588758 24.99995778965743 0.9779045823322434 1.0437589574273543 0.19646050775076362 0.04914231563988699 51.17897606683094 965462.8906989915 0.0375579523296704 0.012008654627420234 17.373450634936944 -1.239886084588758 0.06585437509511083 SAYQEYDS(ph)DS(ph)DVPEELKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SAYQEYDSDSDVPEELKR 18 1 Q96JG6;Q96JG6-3;H0Y7Q2 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 2 SAYQEYDS(1)DS(1)DVPEELKR;SAYQEYDS(1)DS(1)DVPEELKR 102.27 0.0019927 928610000.0 1467370.0 1088990.0 837030.0 919390.0 992090.0 1380360.0 1275050.0 1262530.0 2008450.0 1372890.0 True False 1459469.842960132 1125236.3738416429 954876.5484048156 1035784.6797328185 1118426.780921874 1284938.9622179281 1213370.960335991 1356746.3995974383 1513494.4093511691 1285270.9848097365 1.1355347317485602 0.8754857046805704 0.7429379171320588 0.805888168311953 0.8701875278756402 0.999741671137268 0.9440584706855504 1.055611163429697 1.177568331689381 1.0 20.293641136700327 2.0688890017929507 1.3014532803400622 1.0883937238993562 0.8782587393079809 0.3438272164522068 0.10770670001011877 0.48870043853079675 1.5500877965665798 0.07692892136369582 0.03804372164911833 117.18958108367946 -2.0688890017929507 -0.21013498459137525 SAYQEYDS(ph)DSDVPEELKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SAYQEYDSDSDVPEELKR 18 1 Q96JG6;Q96JG6-3;H0Y7Q2 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 SAYQEYDS(0.999)DS(0.001)DVPEELKR;SAYQEYDS(0.998)DS(0.002)DVPEELKR;SAYQEYDS(0.999)DS(0.001)DVPEELKR;SAYQEYDS(1)DSDVPEELKR 197.33 1.1361e-15 5010950000.0 3256750.0 2706180.0 2230310.0 2364220.0 2352920.0 3091610.0 3052720.0 3011830.0 4055500.0 3357980.0 True False 3239216.0198589386 2796253.565379647 2544318.2617979604 2663530.0095910626 2652550.415150531 2877894.2775671296 2905048.2710771263 3236588.048362852 3056076.365915838 3143670.841488681 1.030392869733465 0.8894867517540371 0.809346267496982 0.8472674602057739 0.8437748571330769 0.9154566182903255 0.9240942889877888 1.0295569134172362 0.9721362445403596 1.0 21.584018737234935 2.025608865049978 2.322920402894417 1.0025183521123793 0.880249818167968 0.4195963617247839 0.057639861114794126 0.28314743419037935 2.8907163902382647 0.031660157735916294 0.0176393986770901 106.0739801799398 -2.025608865049978 -0.12226853394441128 SCAADS(ph)DPEPER ddPTM_BT-474_Trastuzumab_2h_R1 2 SCAADSDPEPER 12 0 Q13207 Q13207 TBX2 T-box transcription factor TBX2 1 SCAADS(1)DPEPER;SCAADS(1)DPEPER 145.06 6.6691e-05 321650000.0 580950.0 692310.0 586270.0 664430.0 683600.0 628610.0 626850.0 588700.0 666610.0 577390.0 True False 577822.2297496124 715353.1198397677 668811.7200498087 748546.7698744575 770652.4079853562 585155.6702887738 596526.8707004559 632631.7833580291 502332.89761636156 540540.4758715514 1.06897125292597 1.32340343003242 1.2373018301200045 1.3848116899433347 1.4257071253411302 1.0825381195465265 1.103574842824922 1.1703689392325198 0.9293159717714291 1.0 19.04404312598196 2.709525769985941 22.601771379016114 1.079926432203431 1.292561243345877 0.5251716489595247 0.10865218254077331 190.53472258194125 148318.3419022151 0.03538632998919915 0.03337195662934732 512.3016681066825 -2.709525769985941 0.2126348111424461 SCAHDWVYE ddPTM_BT-474_Trastuzumab_2h_R1 4 SCAHDWVYE 9 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12;O60361 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 ;;; 143.12 0.00023892 9307600000.0 3381060.0 4501860.0 4488620.0 4428830.0 3333160.0 4371930.0 4103720.0 3332510.0 5224840.0 4123940.0 False True 3362856.7486310815 4651701.688668162 5120578.68021556 4989519.423901832 3757618.168812857 4069708.769516226 3905207.3858672264 3581198.8183428994 3937248.1912690657 3860746.6185173304 0.8710379314979606 1.204871012865016 1.3263182451952913 1.2923716360899105 0.9732879518148543 1.0541248032172452 1.0115161060134452 0.9275922955332957 1.0198152275481664 1.0 21.880448442380462 3.222033381079192 24.99429844867228 0.9931540002414486 1.186784698415474 0.34391947980300597 0.11838356224336227 256.36916363898484 387708.82673980476 0.03541170515193625 0.04243631483922048 1667.3753667240692 -3.222033381079192 0.19363069817402534 SCATFSSSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 SCATFSSSHR 10 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-5;D6RCQ9;D6RE64;D6RBT0;D6RHE8 D6REX3 SEC31A Protein transport protein Sec31A 0 ;;; 168.74 4.8456e-06 424510000.0 220954.0 404903.0 497859.0 457356.0 335993.0 358225.0 448264.0 327706.0 478373.0 419003.0 False True 219764.40821429726 418379.951585968 567953.2197319969 515257.2227062328 378779.7169634641 333461.7489209456 426579.75778522587 352161.0857773503 360484.38401978987 392261.8698134838 0.5602492241185533 1.0665832796465868 1.4478930108655537 1.3135541900904921 0.9656297134961644 0.8500998301963508 1.0874871880564376 0.8977703745327045 0.918989103353829 1.0 18.581457578129747 3.037951837369602 24.824887579117096 0.9477211222757393 1.1224063847335135 0.08669377586315452 0.22287531863397317 347.0263726081248 226993.03852124535 0.0674792137421852 0.08065290582285194 1091.3193040040867 -3.037951837369602 0.17468526245777416 SCCTSVNEVICHGIPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCCTSVNEVICHGIPDR 17 0 P53582;H0Y955 P53582 METAP1 Methionine aminopeptidase 1 0 200.48 1.2351e-11 390120000.0 254610.0 257470.0 292120.0 264710.0 281850.0 296930.0 293180.0 288660.0 349140.0 317060.0 False True 253239.20804983005 266039.7333060981 333247.9568474425 298222.25885867194 317741.9268441671 276403.9279980359 278997.76334363833 310201.2749857794 263099.1252363097 296824.95935127704 0.8531600866830559 0.8962849144746409 1.1227086750917759 1.0047074865619412 1.070469031777533 0.9312017715832519 0.9399403741295854 1.0450646591975852 0.8863780384618716 1.0 18.179252884516558 4.456357641163102 24.680601134466677 1.001542349852973 0.8639412271332714 0.37368924796309677 0.0659245069525304 165.07790267766146 196219.29418994123 0.01560871512584722 0.042755822050473985 28599.447361371032 -4.456357641163102 -0.1376011227197016 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 3 S(0.095)CDEPLT(0.907)PPPHS(0.781)PT(0.11)S(0.11)MLQLIHDPVS(0.998)PR;S(0.021)CDEPLT(0.976)PPPHS(0.522)PT(0.248)S(0.248)MLQLIHDPVS(0.984)PR;S(0.002)CDEPLT(0.998)PPPHS(0.978)PT(0.013)S(0.013)MLQLIHDPVS(0.997)PR 109.27 0.002102 245194000.0 134248.0 153943.0 141414.0 153447.0 150112.0 172902.0 151904.0 117528.0 165230.0 162918.0 True False 133525.223684355 159066.89969449144 161323.86200747712 172873.3744667245 169227.87341646865 160949.69170752834 144555.82319036764 126298.53615509166 124511.28046856714 152520.43375888283 0.8754579330363231 1.042921894294884 1.0577196643861602 1.1334440258674934 1.1095423035840453 1.0552664173639263 0.9477800425016734 0.8280761668613862 0.8163580275768496 1.0 17.218643013556694 2.056822951158075 3.41628752164008 0.8656968946785168 1.052863540870994 0.46067435515908484 0.07969866333199392 0.19030875600099936 4.479899552578132 0.035436516347419914 0.023074658876682676 113.9785036641684 -2.056822951158075 0.18716664619247725 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVSPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 S(0.001)CDEPLT(0.511)PPPHS(0.653)PT(0.422)S(0.401)MLQLIHDPVS(0.013)PR;S(0.002)CDEPLT(0.923)PPPHS(0.766)PT(0.149)S(0.161)MLQLIHDPVSPR;S(0.001)CDEPLT(0.629)PPPHS(0.699)PT(0.337)S(0.323)MLQLIHDPVS(0.01)PR;SCDEPLT(0.995)PPPHS(0.975)PT(0.017)S(0.013)MLQLIHDPVSPR;S(0.003)CDEPLT(0.996)PPPHS(0.342)PT(0.342)S(0.316)MLQLIHDPVSPR 105.71 0.003586 1409604000.0 471066.0 595401.0 588183.0 618848.0 593799.0 582264.0 524666.0 445425.0 589764.0 530743.0 True False 468529.8329963527 615218.5623574955 670994.0538217141 697194.0933480843 669415.7829275841 542013.4601820244 499285.90116124327 478664.8753223195 444424.5646327172 496870.5273480571 0.9429616111404978 1.238186868601558 1.3504404404966524 1.4031705544484847 1.3472640176515427 1.090854519133804 1.0048611734450779 0.9633593642132359 0.894447426786895 1.0 18.922510443151467 2.461259572312651 2.865285148092207 0.9628011314577779 1.2678174603673986 0.559047286397508 0.12136519584520113 0.20315542841463258 3.4170674796005853 0.047814404471833924 0.040465601200770814 289.24081215502974 -2.461259572312651 0.3050163289096207 SCDEPLT(ph)PPPHSPTSMLQLIHDPVSPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 S(0.001)CDEPLT(0.951)PPPHS(0.016)PT(0.016)S(0.016)MLQLIHDPVSPR;SCDEPLT(1)PPPHSPTSMLQLIHDPVSPR;SCDEPLT(1)PPPHSPTSMLQLIHDPVSPR;SCDEPLT(0.981)PPPHS(0.006)PT(0.006)S(0.006)MLQLIHDPVSPR 179.8 3.5306e-17 1025611000.0 643640.0 800443.0 716990.0 805881.0 771313.0 754334.0 754380.0 626950.0 839521.0 728227.0 True False 640174.7137551269 827085.2613769884 817935.9598112004 907905.45197116 869535.138619675 702188.6660912362 717887.757388546 673736.1925875922 632632.2985550552 681750.9293934983 0.9390155350791255 1.213178047461971 1.1997577480955626 1.3317260202033814 1.2754440091386952 1.0299783041233543 1.0530059093974333 0.9882438930988532 0.9279522348694995 1.0 19.37888523632539 2.6202799434629345 5.206376513573936 0.9988428722335614 1.200662271012399 0.4808678253622314 0.0998838347862114 0.20568249101305916 7.9850639430957875 0.03401725805867444 0.0319350405688792 417.1381814489901 -2.6202799434629345 0.2018193987788377 SCDEPLTPPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 SCDEPLTPPPHS(0.983)PT(0.006)S(0.011)MLQLIHDPVS(1)PR;SCDEPLT(0.031)PPPHS(0.931)PT(0.026)S(0.027)MLQLIHDPVS(0.985)PR 115.2 0.00042085 338870000.0 170337.0 191738.0 170342.0 188465.0 174242.0 224630.0 199809.0 158914.0 235320.0 223330.0 True False 169419.9245182197 198119.88342193124 194324.67296079348 212324.6496762482 196430.68588675317 209101.85682214302 190143.47532549634 170772.9696289413 177328.53912644894 209076.88819756743 0.8103235416347222 0.9475934194826816 0.9294411957057931 1.0155338139317043 0.939514106892273 1.000119423169107 0.9094428225171405 0.8167950609039542 0.8481498871309111 1.0 17.67367406661009 -0.451898465785674 6.148954984325748 1.0000000000230833 0.913585935006137 0.13326938142267053 0.066552400355638 0.0 0.0 0.06979818601748268 0.016451590093253463 0.3532657505508091 0.451898465785674 -0.08641406501694626 SCDEPLTPPPHS(ph)PTSMLQLIHDPVSPR ddPTM_BT-474_Trastuzumab_2h_R1 5 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 SCDEPLT(0.001)PPPHS(0.944)PT(0.027)S(0.027)MLQLIHDPVSPR;SCDEPLTPPPHS(0.448)PT(0.448)S(0.105)MLQLIHDPVSPR;SCDEPLTPPPHS(0.89)PT(0.055)S(0.055)MLQLIHDPVSPR;SCDEPLTPPPHS(0.939)PT(0.03)S(0.03)MLQLIHDPVSPR;SCDEPLTPPPHS(0.688)PT(0.156)S(0.156)MLQLIHDPVSPR 150.23 1.1764e-07 2511880000.0 1147020.0 1341560.0 1271704.0 1364640.0 1393650.0 1397840.0 1360330.0 1035438.0 1534030.0 1415100.0 True False 1140844.5717659025 1386213.0136098545 1450748.8693506795 1537403.2840803093 1571123.0666892799 1301210.6109614223 1294525.6409347553 1112707.6414076262 1155988.861448864 1324787.1064719378 0.8611531363738165 1.0463666251262824 1.095080758458008 1.1604908264653881 1.185943808642102 0.9822035590508558 0.9771574878791112 0.8399143046997914 0.8725846257119733 1.0 20.337329106272 2.2385062234676085 2.3375193992959793 0.8929690378156505 1.0735695798822396 0.34820308083264917 0.09326710082488059 0.29837489509287246 3.3256624428398998 0.04338561860359465 0.029857601504278106 173.18338478617292 -2.2385062234676085 0.18060054206658904 SCELFSIIDVDADQEPSQS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCELFSIIDVDADQEPSQSPPR 22 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 SCELFSIIDVDADQEPS(0.142)QS(0.858)PPR 127.17 1.1969e-05 15992000.0 15292.0 17252.0 13184.0 15538.0 18691.0 17128.0 15212.0 12222.0 14374.0 16560.0 True False 15209.669571100925 17826.22239094578 15040.192602617703 17505.10920685297 21071.18805976346 15943.981674975124 14476.137444516764 13134.067702058477 10831.720301732023 15503.12662227071 0.9810711053118649 1.1498469196102592 0.9701393124798459 1.1291341181272654 1.359157321820107 1.0284365253181325 0.933755996272478 0.8471883138199356 0.6986797286536981 1.0 13.92027158263321 2.174673294751862 2.5253039013949494 0.8405353947541405 1.1163801966352593 0.48116925357838813 0.1221893539729993 0.2378013272878099 3.0607380916325195 0.055904766435936545 0.03710401020438417 149.51105111910496 -2.174673294751862 0.2758448018811188 SCFES(ph)S(ph)PDPELK ddPTM_BT-474_Trastuzumab_2h_R1 2 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 SCFES(1)S(1)PDPELK;SCFES(1)S(1)PDPELK 166.6 7.5243e-05 1102140000.0 3323000.0 2681620.0 2114610.0 2240430.0 2322250.0 3352700.0 3083640.0 3111240.0 4819500.0 3271200.0 True False 3305109.3372200048 2770876.100626479 2412328.7074803878 2524068.2082835385 2617974.772445864 3120935.740406885 2934472.5525512532 3343416.5273566004 3631798.802991335 3062429.215384778 1.0792443203637394 0.9047967824713731 0.7877173765720137 0.8242045875226548 0.8548686641617378 1.0191046130072776 0.9582172668054801 1.0917530797316788 1.1859208972884026 1.0 21.546245067547613 2.1458080831174082 1.400537498317151 1.1004292916750849 0.8862512798865213 0.4507658512599474 0.09040750155978915 0.3725208022731952 1.3962823444011756 0.0590163797265062 0.031650065110417874 139.89689746382575 -2.1458080831174082 -0.21417801178856355 SCFESS(ph)PDPELK ddPTM_BT-474_Trastuzumab_2h_R1 8 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SCFESS(1)PDPELK;SCFES(0.001)S(0.999)PDPELK;SCFES(0.001)S(0.999)PDPELK;SCFES(0.007)S(0.993)PDPELK;SCFES(0.196)S(0.804)PDPELK;SCFES(0.038)S(0.962)PDPELK;SCFES(0.004)S(0.996)PDPELK;SCFES(0.058)S(0.942)PDPELK 245.72 1.8223e-16 95135860000.0 161422000.0 138590430.0 122962330.0 118506190.0 118105490.0 159066000.0 160958200.0 150151500.0 216743800.0 151632600.0 True False 160552921.88767037 143203328.68286586 140274357.25626802 133509061.50328673 133145524.08541593 148070141.82108802 153172036.94596484 161356567.38386795 163330194.70812201 141955277.64879984 1.131010586903866 1.0087918607517625 0.9881588031077616 0.9405008655866307 0.9379399363708096 1.0430759903651943 1.079016148486677 1.1366718452206286 1.1505750079416148 1.0 27.08086124603518 2.2983843366736427 2.825705463988081 1.1088135485363948 0.9974676803036263 0.29770835823630526 0.06323641691482082 0.27932812460349643 4.569932380968297 0.025733268567018793 0.019518740111469514 198.78533255491286 -2.2983843366736427 -0.11134586823276849 SCFHSHMNTAVEDAS(ph)DDESIPIMYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCFHSHMNTAVEDASDDESIPIMYR 25 0 Q8IYH5-2;Q8IYH5;Q8IYH5-3 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 1 S(0.001)CFHS(0.001)HMNT(0.001)AVEDAS(0.992)DDES(0.005)IPIMYR 80.83 0.038034 115240000.0 116420.0 143790.0 120550.0 124750.0 123030.0 160080.0 160940.0 119900.0 159370.0 151980.0 True False 115793.20765547792 148575.9632271095 137522.39216061632 140543.33720909446 138697.14124405853 149014.0463877872 153154.71734949568 128847.54683986347 120095.39894858985 142280.50628337587 0.81383747275158 1.0442467988636135 0.9665582148457994 0.9877905335055419 0.9748147857150545 1.047325809278471 1.0764279756248685 0.9055881947962824 0.8440748637019846 1.0 17.118378487567544 1.6078748771169211 24.99999999486377 0.9061124482849773 0.9905659776420658 0.14791386373345583 0.07629193328132224 0.05802349327120898 3818.6406940452543 0.03633896632107719 0.018505162009990646 40.53917227996772 -1.6078748771169211 0.0844535293570885 SCGTDSQSENEAS(ph)PVKRPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SCGTDSQSENEASPVKRPR 19 2 H0Y398;C9JQ48;Q9H8U3 H0Y398 ZFAND3 AN1-type zinc finger protein 3 1 SCGTDSQSENEAS(1)PVKRPR;SCGTDSQSENEAS(1)PVKRPR;SCGTDSQSENEAS(1)PVKRPR 207.13 1.7319e-16 481550000.0 570158.0 449609.0 406437.0 390622.0 380869.0 606699.0 619472.0 506174.0 737250.0 629793.0 True False 567088.3326785096 464573.9637706205 463659.796786266 440074.70514862385 429370.4095625732 564759.3261458272 589505.772747152 543947.2741794911 555564.6161438669 589599.0715470861 0.9618202606569425 0.7879489405429281 0.7863984513571907 0.7463965368769733 0.7282413258147119 0.9578701076715057 0.9998417589096786 0.9225714564851563 0.9422752561093523 1.0 19.16937472703216 2.7214912474301407 23.85479609500015 0.9596593068454777 0.7973978094512522 0.6240863704891662 0.06289012546407012 304.34874770480155 425332.6171146996 0.02072236426629198 0.01958930367995243 526.6126016804596 -2.7214912474301407 -0.16226149739422557 SCLLLQFTDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCLLLQFTDKR 11 1 P61019;E9PKL7;A0A3B3ITL1;Q8WUD1;E9PE37;H0YD31;H0YDL5 P61019 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B 0 ; 184.31 7.955e-06 1910920000.0 859150.0 1050290.0 1047780.0 926250.0 887780.0 1084930.0 983190.0 928550.0 1467900.0 1083020.0 False True 854524.4318605383 1085248.267736289 1195298.3165329767 1043513.1550294488 1000833.5207156817 1009931.3427505109 935629.3435494638 997843.1160813603 1106155.7138522633 1013900.7363799296 0.8428087693392604 1.0703693456334802 1.1789105911893467 1.029206427796126 0.9871119378895971 0.9960850273730039 0.9228017201073065 0.9841625321667069 1.090990147419879 1.0 19.951484984838633 3.3227214784911956 5.264453408061596 0.9902527467504534 1.0451150780841103 0.02256537642486478 0.08627063350651058 0.586634736672055 27.348847430201715 0.024644313061226567 0.03339860782736579 2102.4296782232927 -3.3227214784911956 0.05486233133365692 SCLLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCLLLR 6 0 Q9H0U4;E9PLD0;Q92928;P62820;E7END7;P62820-2;P62820-3 Q9H0U4;P62820 RAB1B;RAB1C;RAB1A Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A 0 126.04 0.092348 0.0 263560.0 322480.0 255750.0 311290.0 271450.0 320690.0 270860.0 258250.0 346020.0 283630.0 False True 262141.02224426853 333213.5518567237 291757.3769811498 350699.2820827175 306017.54848979664 298521.4551230601 257757.46701431813 277521.9263669286 260748.00743045198 265528.4905721404 0.9872425428978533 1.2549069636133612 1.0987799326260372 1.320759521236526 1.1524847967553822 1.1242539528614388 0.9707337486042351 1.045168169219603 0.9819963457353003 1.0 18.018507141499846 2.3906523136552673 3.8461930940351907 1.0067792485471907 1.170991748112528 0.45000297426296465 0.08521356577539001 0.2000692185878844 5.74125405681623 0.029375760821518493 0.024259731309421776 245.8398677705947 -2.3906523136552673 0.16421249956533734 SCMLTGT(ph)PESVQSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SCMLTGTPESVQSAK 15 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4;C9JSZ1 FUBP1 Far upstream element-binding protein 1 1 SCMLTGT(1)PESVQSAK 259.48 8.1752e-24 365260000.0 1286100.0 1210600.0 1168300.0 1114800.0 1111200.0 1508500.0 1489700.0 1374700.0 1839600.0 1487300.0 True False 1279175.780499143 1250894.0891768455 1332786.484954357 1255933.5656969815 1252704.7334015914 1404220.945627042 1417637.519793362 1477287.094585156 1386255.2293770844 1392379.2406584066 0.918697825381443 0.8983860521974905 0.9572007726315495 0.9020053797290852 0.8996864480751896 1.0085046549265098 1.0181403732527723 1.0609804078137501 0.9956017648766249 1.0 20.4091207791459 2.658657433231519 4.515605550611799 1.0257829323238608 0.9158725908099314 0.8234804390399364 0.023376723186217502 0.08558446935866042 3.2058704059171603 0.007835661625549648 0.007410528181295343 455.67734082020314 -2.658657433231519 -0.10991034151392931 SCNITECQDPDLLHNWPDAFTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCNITECQDPDLLHNWPDAFTLR 23 0 Q6ZN28 Q6ZN28 MACC1 Metastasis-associated in colon cancer protein 1 0 140.87 1.8976e-07 71301000.0 46743.0 44086.0 38587.0 53897.0 41038.0 49836.0 49067.0 41748.0 46843.0 53212.0 False True 46491.34088163553 45553.375859450214 44019.71419578349 60720.3546738161 46263.94604871718 46390.95462132531 46693.44175585745 44863.44775204854 35299.170314041534 49815.96460291478 0.9332618820536756 0.9144332790212567 0.8836467294504191 1.2188934844044614 0.9286971840752078 0.9312467396969953 0.9373188319859488 0.9005837407677847 0.7085915247333412 1.0 15.604320538760494 1.6358536358286637 3.083192342631377 0.8434524726038329 0.9672560391783283 0.13630783951744763 0.11011280338211467 0.36411331173758504 8.155422089218758 0.06891306555287469 0.029134359733996123 43.23680915310813 -1.6358536358286637 0.12380356657449532 SCS(ph)PLAFSAFGDLTIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SCSPLAFSAFGDLTIK 16 0 E9PLZ8;Q96EY5;Q96EY5-2 E9PLZ8 MVB12A Multivesicular body subunit 12A 1 S(0.003)CS(0.997)PLAFSAFGDLTIK;S(0.002)CS(0.998)PLAFSAFGDLTIK 281.99 1.5778e-35 272520000.0 433960.0 402470.0 408410.0 357900.0 354270.0 440350.0 445480.0 396290.0 571210.0 393830.0 True False 431623.6075774891 415865.9706517469 465910.5780366429 403210.1033036868 399384.1845771979 409909.64097240206 423930.43050113844 425863.1721198451 430442.94932185585 368695.43222517346 1.1706779359118382 1.1279390366782873 1.2636733122098927 1.0936129608935166 1.0832360524967988 1.1117838875802992 1.1498119950730263 1.1550541040057083 1.1674756769402321 1.0 18.49207001740255 -1.583759760278453 2.7094851716435944 0.9891224849645913 1.1461775949702713 0.4561216194949007 0.04815742034089417 8466359.194212155 7870967.8008914655 657240.911814856 0.012089812572077528 0.026075956010316766 1.583759760278453 0.15705511000567995 SCS(ph)VTDAVAEQGHLPPPSAPAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SCSVTDAVAEQGHLPPPSAPAGR 23 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-4 Q96PU5-7 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 S(0.084)CS(0.908)VT(0.008)DAVAEQGHLPPPSAPAGR;S(0.065)CS(0.796)VT(0.139)DAVAEQGHLPPPSAPAGR;S(0.034)CS(0.965)VT(0.001)DAVAEQGHLPPPSAPAGR;S(0.149)CS(0.849)VT(0.002)DAVAEQGHLPPPSAPAGR 271.77 8.152199999999995e-52 4308140000.0 1661180.0 1261090.0 1324900.0 1335620.0 1408690.0 1520840.0 1265710.0 1343390.0 1935490.0 1484390.0 True False 1652236.3914544478 1303064.6183049965 1511434.4037627568 1504709.3550557964 1588078.321540216 1415707.910472277 1204482.7718182544 1443640.5833961966 1458514.4237372568 1389654.9593497843 1.1889544093934832 0.9376893231933607 1.0876328642542699 1.0827934984378034 1.142786064163203 1.0187477840792099 0.866749522040945 1.0388482217713035 1.0495514832111215 1.0 20.40629528664103 2.4881012846844293 24.829891507512837 0.9863400254565222 1.079460907587803 0.27741651537310597 0.07577417373726018 680.0742502538588 1537903.1327438082 0.024915270571625136 0.022182356258902143 307.68142952559356 -2.4881012846844293 0.09312088213128078 SCSSISTALPQVNEDLVSLPHQLPEASEPPQS(ph)PSEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SCSSISTALPQVNEDLVSLPHQLPEASEPPQSPSEKR 37 1 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 SCSSISTALPQVNEDLVSLPHQLPEAS(0.065)EPPQS(0.929)PS(0.006)EKR;SCSSISTALPQVNEDLVSLPHQLPEAS(0.063)EPPQS(0.932)PS(0.005)EKR;SCSSISTALPQVNEDLVSLPHQLPEAS(0.001)EPPQS(0.969)PS(0.03)EKR;SCSSISTALPQVNEDLVSLPHQLPEAS(0.026)EPPQS(0.868)PS(0.106)EKR 314.29 4.2699999999999985e-110 716570000.0 346278.0 329581.0 325255.0 299877.0 332730.0 382186.0 358357.0 361546.0 478422.0 389582.0 True False 344413.6777231024 340550.9043490787 371048.07683285995 337841.3974529181 375101.19325478043 355766.3813890732 341021.90285331925 388526.39841338835 360521.3086263561 364718.543222069 0.9443273014868251 0.9337361937797741 1.0173545703349036 0.9263071585784823 1.0284675682815219 0.9754546019132759 0.9350275964599876 1.0652773368225024 0.9884918530365009 1.0 18.47642402627545 5.8333931702961745 0.2795571414948594 1.0137393287459002 0.8153546341466253 0.18366818513059513 0.04021072019613549 23.494189463911475 0.9386465323691445 0.04619716271974518 1.7824872717419389 681385.9437407918 -5.8333931702961745 -0.19838469459927488 SCSSSCAVHDLIFWR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCSSSCAVHDLIFWR 15 0 O95197-3;B7Z4M1;O95197-6;O95197-5 O95197-3 RTN3 Reticulon-3;Reticulon 0 ; 167.03 1.3342e-06 1397360000.0 544460.0 708480.0 780060.0 733020.0 861220.0 1047760.0 756510.0 708750.0 790550.0 841700.0 False True 541528.6878551923 732061.3285147956 889885.6675969335 825820.2568417655 970891.2621491344 975330.8173617421 719914.7211511553 761640.5239595757 595729.5453272748 787981.9853843763 0.6872348580291916 0.9290330770159643 1.1293223501332317 1.048019208762662 1.232123678151773 1.237757760269072 0.913618248264879 0.9665709852339438 0.7560192445728046 1.0 19.587803122019853 2.083859166192351 24.999999492310415 0.9128320456277632 1.0533489128367102 0.14382395073482668 0.1601055359011659 52.188088255801496 15551.81860666544 0.06362529592101762 0.046990389693974906 121.29954343051034 -2.083859166192351 0.14051686720894696 SCT(ph)PS(ph)PDQISHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 S(0.329)CT(0.671)PS(0.995)PDQIS(0.005)HR;S(0.423)CT(0.589)PS(0.988)PDQISHR 114.88 0.00044767 0.0 399460.0 389430.0 317440.0 380330.0 364450.0 440570.0 422230.0 398750.0 504420.0 415480.0 True False 397309.35174417787 402391.942134594 362132.7927620575 428479.7390038868 410860.54723560996 410114.4328902263 401805.1218247641 428506.7498114727 380112.44988170813 388963.71068967594 1.0214560917256372 1.0345230957949993 0.9310194828200188 1.1015930978346145 1.0562953199595626 1.054377109275947 1.0330144195516824 1.10166254083622 0.977243993296255 1.0 18.569276036202954 3.7247463984892986 24.937764874936022 1.053342683554271 0.9995519027269517 0.19887946761572106 0.04485740177880337 1012.2910054842912 1827413.0645749946 0.011367722851643482 0.01771301989694569 5305.745305628172 -3.7247463984892986 -0.05379078082731925 SCT(ph)PSPDQISHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.312)CT(0.475)PS(0.213)PDQISHR 89.46600000000002 0.034613 767560000.0 206720.0 190050.0 165690.0 162110.0 171040.0 207500.0 163320.0 179700.0 239270.0 194230.0 True False 205607.04248875097 196375.699362349 189017.71179670264 182633.10937848728 192820.93016649387 193156.01340246017 155419.58765701271 193110.12649811065 180305.11455373748 181834.07511133098 1.1307398921949288 1.079971942784182 1.0395065483791932 1.00439430434954 1.0604224210915143 1.062265217804733 0.8547330172403299 1.0620128618900264 0.9915914519505908 1.0 17.472263055638997 7.99999999999868 0.4115196698477737 0.9927281872448059 3.4989556507742456 0.36341739106952464 0.056109699549716056 82.03316575117483 1.069082591893787 0.03717840434991237 168.1418255800556 99999999.99969609 -7.99999999999868 2.5062274635294397 SCTAPTAQPHDRPLTASSSLAPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCTAPTAQPHDRPLTASSSLAPGQR 25 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4;A8MXE8;Q7Z5J4-4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 0 49.902 0.08445 54773000.0 22257.0 22407.0 21571.0 21957.0 21074.0 24587.0 27065.0 23444.0 34719.0 25660.0 False True 22137.170784985155 23152.803449682462 24608.00930150686 24736.75394869808 23757.648984615873 22887.358561572477 25755.762551659598 25193.510326219846 26162.967660764873 24022.35683136875 0.9215236848067343 0.9638023284813249 1.0243794759294125 1.029738843792232 0.988980771178654 0.9527524181842901 1.0721580206496366 1.0487526475055016 1.0891091096690764 1.0 14.552090080223568 2.230986203714214 24.994641370146937 1.0562871494352473 0.9841106345220124 0.47701445690996636 0.03687045862014586 157.47835037232903 519654.628643759 0.014077620475917353 0.010599792669628743 170.21044365768267 -2.230986203714214 -0.07217651491323485 SCTKPS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 5 SCTKPSPSK 9 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 S(0.022)CT(0.07)KPS(0.887)PS(0.021)K;SCTKPS(0.997)PS(0.002)K;SCTKPS(0.992)PS(0.008)K;SCTKPS(0.979)PS(0.021)K;SCTKPS(0.999)PS(0.001)K 107.17 0.0017064 3854660000.0 5988870.0 3557970.0 3281430.0 2834180.0 2848850.0 5239120.0 5881520.0 4457200.0 8850690.0 5607250.0 True False 5956626.589346015 3676394.8806117116 3743426.821299136 3192986.8974049743 3211634.1610431275 4876951.965961917 5597008.408011716 4789818.897202999 6669556.042669863 5249390.504391748 1.134727276311903 0.7003469979107029 0.713116469077183 0.6082585958757794 0.6118108680152883 0.9290510892420288 1.0662206218663182 0.9124523872239526 1.270539129655143 1.0 22.323718493562502 2.5201536792674815 4.893245934384266 1.0369119465915895 0.7409977742496244 0.4416752786064828 0.16262642960400603 0.1991960449920922 11.141580067446785 0.054943611436794985 0.05005699840627232 331.24831613961305 -2.5201536792674815 -0.29591417234196504 SCTPS(ph)PDQISHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.001)CT(0.003)PS(0.997)PDQISHR;S(0.017)CT(0.017)PS(0.967)PDQISHR;S(0.022)CT(0.006)PS(0.972)PDQISHR 144.4 4.0594e-05 1161890000.0 1019350.0 1201990.0 1000590.0 1134820.0 1102590.0 1114560.0 1125430.0 1018600.0 1245040.0 1077510.0 True False 1013861.9328604308 1241997.5105317002 1141464.37471581 1278488.0956442824 1242998.30093706 1037513.0905920294 1070988.6513398958 1094613.1043459964 938216.5746812616 1008742.3892972769 1.0050751744126867 1.2312335871965454 1.131571734098526 1.2674079221900443 1.2322257041294493 1.0285213564930042 1.0617067971992153 1.0851265059938047 0.9300854059824473 1.0 19.94412635810406 2.7268365787328723 24.679731694280555 1.0345386927745568 1.1795975333962754 0.4815660424722915 0.07832500075880341 572.1015871967237 1204302.5721266426 0.024872854995126353 0.023638785118939507 533.1342439213214 -2.7268365787328723 0.1450588406217186 SCTVNIMFGTPQEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SCTVNIMFGTPQEHR 15 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 123.42 0.00077097 0.0 140880.0 146220.0 114130.0 166250.0 165160.0 144150.0 140030.0 140440.0 169250.0 144500.0 False True 140121.51773323937 151086.84430814345 130198.51196425657 187297.2329540033 186192.14701998467 134185.24979260063 133256.21393345261 150920.34593987002 127540.60533380721 135277.88628732602 1.0358050497301947 1.1168628402963046 0.9624522938488186 1.3845369564408316 1.3763679499287735 0.991923022123478 0.9850554114248988 1.1156320525242382 0.9428045398559446 1.0 17.04556649740929 SCTWPLQRPELQASPAKPSGETAADSMIPEEEDDEDDEDGGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCTWPLQRPELQASPAKPSGETAADSMIPEEEDDEDDEDGGGR 43 2 O43524;A0A2Z4LIS9 O43524 FOXO3 Forkhead box protein O3 0 ; 98.22 2.7985e-05 675830000.0 188328.0 182138.0 190068.0 172668.0 159318.0 231660.0 207510.0 198724.0 234870.0 210451.0 False True 187314.06297320788 188200.35322525373 216827.92229932785 194527.75109595116 179606.2029482313 215645.88946898282 197471.94853481947 213553.79398002522 176989.43559675818 197019.83700383417 0.9507370720724055 0.9552355543852734 1.1005385325494317 0.9873510914140361 0.9116148184851864 1.0945389700265875 1.0022947513197695 1.0839202652262334 0.8983330728941463 1.0 17.5879813696325 2.7335306461867486 24.987162263088724 1.0250279924758732 0.9866420226763007 0.04991023014741969 0.06809729311150274 1271.3425465182854 6315575.119613312 0.021586004045356478 0.0209086186569906 541.4154517612211 -2.7335306461867486 -0.03838596979957243 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAK 40 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 SCVEEPEPEPEAAEGDGDKKGNAEGS(1)S(1)DEEGKLVIDEPAK 113.05 2.7251e-06 260650000.0 61850.0 41294.0 31676.0 26560.0 34545.0 62622.0 64461.0 58479.0 176690.0 55725.0 True False 61517.00647218098 42668.44582724989 36135.70546727233 29922.493276741847 38944.10098574334 58293.08853633186 61342.77516506668 62842.999930345075 133147.1170246995 52168.58279142724 1.1791964278218796 0.817895437141557 0.6926717869976419 0.5735730525088933 0.7465048675261876 1.117398353897991 1.1758566532335823 1.2046138991659927 2.552247155285562 1.0 15.670893621281 1.537828041380892 3.1808133867929453 1.797695857811268 0.8784740215741335 0.4069615782757283 0.4067298631612854 0.18247065392016826 4.05578151618163 0.26581427457348916 0.10176559552456158 34.50071069471226 -1.537828041380892 -0.9192218362371346 SCYDLSCHAR ddPTM_BT-474_Trastuzumab_2h_R1 6 SCYDLSCHAR 10 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;;;; 174.41 3.1133e-06 6887760000.0 3186600.0 4938660.0 5587600.0 5260240.0 4512510.0 4539720.0 4807710.0 4241680.0 6069910.0 5045360.0 False True 3169443.699664541 5103040.312616986 6374285.511710149 5926185.844655443 5087151.400757759 4225899.841751407 4575142.700064273 4558215.700414617 4574062.013126908 4723360.805249985 0.6710145234176743 1.0803833378438907 1.349523310737806 1.254654490520505 1.077019438172799 0.8946807190876349 0.9686202025852081 0.9650365255493903 0.9683914063992035 1.0 22.171382312744758 2.892364665272709 5.971216849120579 0.9594748061692168 1.113661200822444 0.11982623811990412 0.16695306666460843 0.46427125843851874 21.98129377008481 0.05377882726153033 0.057336191156719174 780.4851876587077 -2.892364665272709 0.15418639465322725 SCYLSSLDLLLEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SCYLSSLDLLLEHR 14 0 Q9BQ69 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 0 ; 202.13 1.6878e-08 988300000.0 795950.0 914160.0 991180.0 925990.0 875440.0 1203790.0 1037900.0 791570.0 1266520.0 971550.0 False True 791664.6936383592 944587.2629786106 1130729.5285089982 1043220.2390561061 986922.0948605924 1120574.8307168568 987692.8118369678 850640.9729110142 954403.1164985152 909544.847214197 0.8703965462100219 1.0385274193699665 1.2431817210248153 1.1469695444389985 1.0850724929984383 1.2320171282911598 1.0859198585557672 0.9352380759633824 1.0493194694266177 1.0 19.794785249486065 1.8999396873063727 6.785358236265796 0.991493827014887 1.1114179259927637 0.1816152140105589 0.1019280079656301 0.4015129433281243 23.361617786734875 0.045727661967359556 0.028174020794349518 79.42179299633625 -1.8999396873063727 0.1199240989778767 SDAEEDGGTVS(ph)QEEEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDAEEDGGTVSQEEEDR 17 0 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 SDAEEDGGTVS(1)QEEEDR;SDAEEDGGTVS(1)QEEEDR 349.47 1.3163999999999996e-87 1214750000.0 865930.0 1018900.0 1053470.0 801150.0 968910.0 1088740.0 746580.0 700560.0 752570.0 799330.0 True False 861267.9290938667 1052813.4705619444 1201789.4190746122 902575.5078562389 1092294.9453204968 1013477.9664182877 710465.0731874384 752839.3445716 567109.207421349 748316.0750591571 1.1509413706310938 1.406910135504861 1.6059917181113694 1.2061420807843624 1.4596705613121392 1.3543447751515543 0.9494184300815315 1.006044597548015 0.7578471535260244 1.0 19.51328824134626 2.241451172187278 5.670518460348286 0.9351893870803629 1.3759691516849206 0.7154252786795869 0.13455255850875336 0.08603568002256157 9.200641777883547 0.04835493601252638 0.03784917874542926 174.36173112132516 -2.241451172187278 0.4407797646045577 SDAEEDGGTVS(ph)QEEEDRKPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SDAEEDGGTVSQEEEDRKPK 20 2 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 1 SDAEEDGGTVS(1)QEEEDRKPK;SDAEEDGGT(0.045)VS(0.955)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK 333.68 3.3227999999999985e-80 7454990000.0 4151690.0 3117030.0 3277560.0 2079520.0 3473920.0 5481430.0 3655920.0 3687210.0 6340200.0 3888780.0 True False 4129337.7623361186 3220778.459265577 3739011.958937778 2342787.018782013 3916303.120462974 5102511.645998294 3479069.1826293482 3962368.333473 4777742.664327351 3640594.7310479362 1.134248129054315 0.8846847004963071 1.0270332830651305 0.6435176645184144 1.0757316894033069 1.401559916154015 0.9556320985027374 1.0883849003243604 1.3123522438742008 1.0 21.795742719046657 3.014149011724617 24.99756635045335 1.1452745051325706 0.9187136417801998 0.28838496245334244 0.16999458482374724 299.7328792398697 529545.0078998896 0.04798281784493098 0.05732766335603378 1033.1158195727644 -3.014149011724617 -0.2265608633523708 SDALETLGFLNHYQMK ddPTM_BT-474_Trastuzumab_2h_R1 4 SDALETLGFLNHYQMK 16 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0;M0R076 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;; 256.81 1.1895e-26 14002170000.0 2512750.0 2546180.0 2564170.0 2290220.0 2328650.0 2816590.0 2957730.0 2469690.0 3536960.0 2711980.0 False True 2499221.63319277 2630928.062101684 2925182.8478348167 2580161.6171784555 2625189.7745100916 2621885.762839685 2814653.30027416 2653990.8086317135 2665323.600835824 2538899.1145571065 0.9843721709394279 1.0362475795185866 1.1521461530562214 1.0162521237589808 1.0339874315833293 1.0326860755540714 1.1086117144773424 1.0453313380648777 1.0497950019178968 1.0 21.275771638661762 SDDDFADFHSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDDDFADFHSSK 12 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 0 ;; 166.7 5.1196e-05 929800000.0 1099010.0 1437580.0 1524980.0 1538920.0 1477290.0 1830960.0 1884620.0 1473290.0 1946070.0 1810200.0 False True 1093093.0522714898 1485428.9812645393 1739683.9286362221 1733747.1142109775 1665414.1249161588 1704390.0448162335 1793453.7306524562 1583234.381015033 1466487.124501994 1694671.486209808 0.6450176693042913 0.8765291641194443 1.0265611611410812 1.023057936785473 0.9827356738272123 1.0057347743710265 1.0582899076584915 0.9342426505068496 0.8653518610747644 1.0 20.692574201889105 4.655596770648752 2.6205704900719056 0.9870555980739857 0.6067100993541156 0.80026682449262 0.05187860830668833 0.16683602836144065 1.6752904651442193 0.013478434507608309 0.12721718077390345 45247.72732871721 -4.655596770648752 -0.3803454987198701 SDDHPDVVYETMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDDHPDVVYETMR 13 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 0 135.58 8.227e-05 318380000.0 351150.0 415100.0 367910.0 364520.0 335510.0 387040.0 386480.0 340540.0 465810.0 366340.0 False True 349259.4474164331 428916.3525667512 419708.53006895306 410668.1946249224 378235.20977642905 360284.8357941596 367784.48590302607 365952.8240270819 351017.3670342138 342959.8675605468 1.018368271193638 1.2506313220191265 1.22378321712775 1.1974234698245627 1.102855597848208 1.0505160220548377 1.0723834497577087 1.0670427027805984 1.0234940010065303 1.0 18.387680239584615 3.0403866712961727 3.1962162912176417 1.051588781158136 1.181602516688661 0.49166819932713646 0.06146553552339846 0.20682100863084535 4.356678475552333 0.018521000697763808 0.02191456415318485 1097.4548731710279 -3.0403866712961727 0.1300137355305251 SDDIYNQVSAYPLPEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDDIYNQVSAYPLPEHR 17 0 Q12768;E7EQI7;E5RFU6 Q12768 KIAA0196 WASH complex subunit strumpellin 0 99.021 0.0016838 148490000.0 151080.0 174720.0 169970.0 159050.0 149460.0 171570.0 155630.0 166810.0 197080.0 156660.0 False True 150266.60206656592 180535.44957952978 193900.29859427575 179185.71369223623 168492.8450811753 159709.76973233782 148101.58233566562 179258.2092440169 148512.27473670137 146661.82467662598 1.0245788390938684 1.2309641583799438 1.3220911373617892 1.2217611098683794 1.1488527805561157 1.0889661988351855 1.0098168535828198 1.222255414040174 1.0126171214912636 1.0 17.16213386816788 2.9807433113544684 3.1491571899496833 1.0878717744932114 1.210098923417537 0.3030873660207435 0.0923088455834341 0.3509560527099941 7.130210336086153 0.02955552844089695 0.03371321151244237 956.6284913398142 -2.9807433113544684 0.12222714892432562 SDDNSYDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDDNSYDEK 9 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 117.7 0.0025809 219360000.0 549180.0 506960.0 417720.0 423770.0 438510.0 491300.0 497520.0 486640.0 671720.0 575710.0 False True 546223.2758996343 523833.85713620886 476531.3451126719 477419.23854988243 494351.64924759837 457337.5873958013 473453.05688903324 522955.5479078498 506183.60658685403 538967.6949098709 1.0134619960682 0.9719206959589799 0.8841556731751058 0.8858030695693535 0.9172194436074069 0.8485435986516405 0.8784442209810119 0.9702910820940785 0.9391724427407487 1.0 19.039839276561043 1.6549763713584047 7.905294693217008 0.9661493925568088 0.9119066231812649 0.22147102674111163 0.04737958646941359 0.20408555379010196 23.555595120817934 0.025321189262293715 0.013108130729494074 45.18313609363387 -1.6549763713584047 -0.05424276937554384 SDEAVKPFGLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SDEAVKPFGLK 11 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 165.7 1.9417e-05 13544680000.0 18150700.0 15805370.0 14778960.0 13043120.0 13981110.0 20357400.0 20000500.0 17862600.0 26118400.0 19078000.0 False True 18052978.647932347 16331442.185902087 16859709.106976878 14694377.654658793 15761521.485968627 18950140.85416504 19032999.405670334 19195597.91644492 19681870.28862932 17860425.70650243 1.0107809827489058 0.9143926608622948 0.9439701709259247 0.822733897619754 0.8824829679300613 1.0610128316967202 1.0656520577077289 1.0747559006645846 1.1019821482454226 1.0 24.09026313197977 2.7303807032693688 23.857141190207876 1.066420943166524 0.9113432642270971 0.6755143141853557 0.05042009860395155 187.32107728843337 546329.9862973535 0.016485988411720786 0.015807738619896906 537.5027657374615 -2.7303807032693688 -0.1550776789394268 SDEDDWSKPLPPSER ddPTM_BT-474_Trastuzumab_2h_R1 3 SDEDDWSKPLPPSER 15 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ;; 174.62 2.5396e-11 869030000.0 600280.0 548360.0 489150.0 466715.0 498266.0 637170.0 539130.0 549480.0 702690.0 581590.0 False True 597048.159177377 566611.8311093805 558018.0682319817 525801.071146633 561717.2216460382 593123.9376368456 513050.2222233969 590484.9878029032 529521.465063593 544472.4282757506 1.096562705788656 1.0406621192991194 1.024878468133139 0.9657074331784871 1.0316724823420331 1.0893553223900903 0.9422887102807714 1.0845085207948295 0.9725404585508495 1.0 19.054499468104463 4.698263162317986 2.2441030230991488 1.018270183861443 1.1122561642866378 0.2315206765837382 0.04540515123286033 0.8363823053599669 5.244416976059531 0.010832200435422185 0.1504712576156771 49918.68799350108 -4.698263162317986 0.09398598042519479 SDEDYLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDEDYLYR 8 0 E7EMD0;P16435;H0Y4R2 E7EMD0;P16435 POR NADPH--cytochrome P450 reductase 0 ; 144.35 0.0013652 938160000.0 946140.0 1347640.0 1394390.0 1102960.0 1518650.0 1663820.0 1243320.0 1186420.0 1424020.0 1319760.0 False True 941046.0873660356 1392495.3827344184 1590707.9917448491 1242594.6229109627 1712041.075756232 1548804.0396109947 1183175.8616563603 1274956.6849186884 1073089.3518903882 1235531.786896619 0.7616526724332475 1.1270413254458285 1.2874682858142839 1.0057164340806513 1.385671412029389 1.2535525641968677 0.9576247848938269 1.0319092543309598 0.8685242769720639 1.0 20.236700697116085 2.2190699223002013 24.954561027079013 0.9737685383991864 1.1486002551991792 0.2046210732018392 0.16508073675149143 391.82736179706404 501666.0955595728 0.06245993494890809 0.04619585889874882 165.60365672828402 -2.2190699223002013 0.17483171679999276 SDEGHPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDEGHPFR 8 0 Q9NQC3-5;Q9NQC3;Q9NQC3-4;Q9NQC3-2;F8W914;A0A0U1RQR6;H7C106;Q9NQC3-3;Q9NQC3-6 Q9NQC3-5;Q9NQC3-2 RTN4 Reticulon-4;Reticulon 0 ;;; 105.14 0.004446 2661580000.0 1895300.0 2877410.0 2813040.0 2373570.0 3288000.0 3155830.0 2299930.0 2286550.0 2670380.0 2679740.0 False True 1885095.9153876277 2973182.852418925 3209091.580617997 2674063.7186323833 3706707.3104971466 2937674.9001247548 2188673.5993141867 2457183.9718656354 2012300.6302587443 2508716.698959159 0.7514184109228972 1.1851409342682928 1.2791765534742987 1.0659090042896533 1.4775312461686174 1.1709871032243562 0.8724275643488342 0.979458530684272 0.802123504456931 1.0 21.25851813051233 2.2451595473428503 24.466112415005682 0.917634912912396 1.1726476660663958 0.30189194987599977 0.1786844274961471 141.77017665865316 525626.7457844788 0.06257106266075864 0.05118849536718891 175.85695433412508 -2.2451595473428503 0.25501275315399985 SDEGQLS(ph)PATR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDEGQLSPATR 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 SDEGQLS(0.976)PAT(0.024)R;SDEGQLS(1)PATR 137.62 7.8125e-05 2206600000.0 1369510.0 1322760.0 1170780.0 1148850.0 1267440.0 1288450.0 1163660.0 1166570.0 1444100.0 1217630.0 True False 1362136.7103268653 1366787.2669746955 1335615.6473978125 1294294.292205755 1428840.9712945588 1199382.4841850603 1107369.3201871137 1253625.3771224313 1088220.904948604 1139919.8109345094 1.1949408171178129 1.1990205397467384 1.1716750902880362 1.1354257376619228 1.2534574428732763 1.0521639089698802 0.9714449293405027 1.0997487411809308 0.9546468922726044 1.0 20.120500909121084 2.6088798591224127 5.576732665614618 1.0212929048158685 1.1866531257878123 0.7845063674951492 0.04609445378044469 0.1092257919431153 4.511519606930154 0.014665626082200007 0.013764909484432517 406.3309084303989 -2.6088798591224127 0.1653602209719438 SDEMNVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDEMNVK 7 0 F8VPF3;P60660;F8W1R7;J3KND3;G3V1V0;B7Z6Z4;P60660-2;G8JLA2 F8VPF3;P60660;P60660-2 MYL6 Myosin light polypeptide 6 0 76.774 0.092701 165140000.0 308540.0 246130.0 228310.0 230040.0 219850.0 277260.0 307970.0 242310.0 368440.0 289010.0 False True 306878.8549220168 254322.28826127283 260454.06349390527 259163.0404134671 247846.5943469579 258093.66879983692 293072.3145403513 260392.4026252487 277642.8988430601 270565.1343660903 1.1342143385954229 0.9399669652822306 0.9626298085454568 0.9578582289276212 0.9160330096767276 0.9539058659739257 1.083185811161491 0.9624019119659473 1.0261591889640636 1.0 18.045616416789265 SDES(ph)PKPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDESPKPGK 9 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 SDES(1)PKPGK;SDES(1)PKPGK;SDES(1)PKPGK 115.14 0.00092349 1287160000.0 3986950.0 1933950.0 1506250.0 1467020.0 1420920.0 2638680.0 3271680.0 2663910.0 5774100.0 3567970.0 True False 3965484.704191788 1998320.356652535 1718316.907440302 1652744.5815830494 1601865.7395473262 2456274.2623845926 3113416.339368691 2862704.491260886 4351150.423975988 3340259.0999072 1.187178774335787 0.5982530986018578 0.514426233428431 0.49479532340139915 0.4795633187832135 0.7353544108158656 0.9320882740668798 0.8570306690700786 1.3026385959391213 1.0 21.671528584494503 1.8660293658237206 1.3631340726225007 1.1068866851804735 0.6390506779938454 0.40786903996998913 0.21552728814329372 0.4152105551526521 1.4394291250557152 0.16490441959012567 0.07004125485696965 73.45635356866995 -1.8660293658237206 -0.4678360071866281 SDESDQQESLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDESDQQESLHK 12 0 P49770;G3V5E5;H0YJJ8 P49770 EIF2B2 Translation initiation factor eIF-2B subunit beta 0 ; 222.79 2.3967e-11 810290000.0 493350.0 495170.0 519170.0 497230.0 529170.0 656470.0 605420.0 564120.0 798740.0 666950.0 False True 490693.8584163383 511651.4341134143 592264.6232934648 560179.2670178601 596556.6628636785 611089.7740641595 576133.5216710059 606217.4989433178 601901.2295676521 624384.6799953766 0.7858838855879227 0.8194490520126197 0.9485572632849517 0.8971701019666403 0.9554312941632326 0.9787071874804558 0.9227220656267094 0.9709038648222545 0.9639910280503824 1.0 19.252075613985426 4.977241513833104 0.6792394798616374 0.9651295672080535 0.5922135176644014 0.8232336783941183 0.028168187287516324 1.5103299930845342 0.42168709620995604 0.010756476235417159 0.4670669554874197 94894.60313211891 -4.977241513833104 -0.3729160495436521 SDFFELLSNHHLDSQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDFFELLSNHHLDSQSR 17 0 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 ; 169.25 1.1544e-09 793370000.0 466660.0 712280.0 763310.0 893520.0 856020.0 903030.0 836830.0 588690.0 847710.0 843590.0 False True 464147.5544107996 735987.8092176483 870777.4131905431 1006639.5403853311 965029.0729719498 840605.6616039692 796349.335898958 632621.03710725 638803.229232033 789751.3639662656 0.5877135204677225 0.9319234417290431 1.1025969095100399 1.2746284290410292 1.2219403688338186 1.0643927949453669 1.0083544926083525 0.8010382330080692 0.8088662563668831 1.0 19.591038998065393 -1.0529725537177956 4.256825677493494 1.0000012177970448 0.9865270168046594 0.0 0.19657995781316712 2.5232000030279974e-06 5.615832819086343e-07 0.20539434726894548 0.048407408264393895 0.08851715486038819 1.0529725537177956 -0.013474200992385388 SDGDSIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDGDSIKK 8 1 Q9P2I0;H0YJF4 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 0 67.563 0.094237 161320000.0 159470.0 157990.0 122500.0 116120.0 137630.0 131120.0 170730.0 140270.0 243530.0 176110.0 False True 158611.4312387826 163248.6016430281 139746.9352109124 130820.78009394821 155156.36470307875 122055.98302327981 162471.13764806394 150737.6596766275 183515.29463481274 164870.5090246432 0.9620364016409687 0.990162537914087 0.8476163265197685 0.7934759276711788 0.941080158125111 0.7403142244501477 0.9854469341377443 0.9142790943533554 1.1130874509969682 1.0 17.330973836287438 1.44616057855371 2.4491857921516935 1.0528064115898068 0.8877344600711915 0.35211996220940966 0.08361078022632472 0.2972829304729659 3.32104072769548 0.06782447783647237 0.022020137471074352 27.935765634599246 -1.44616057855371 -0.1650719515186153 SDGSLEDGDDVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDGSLEDGDDVHR 13 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 0 ; 233.37 1.2356e-16 799600000.0 958780.0 1388780.0 1344600.0 1255660.0 1391700.0 1312130.0 1259210.0 1155240.0 1221670.0 1226280.0 False True 953618.0350104726 1435004.7027647626 1533907.9925272886 1414626.427254281 1568924.7457478363 1221425.5415217835 1198297.201650666 1241449.874989857 920605.798039305 1148017.7605288727 0.8306648797586168 1.2499847581658317 1.336136116762377 1.2322339217144045 1.3666380431475718 1.0639430708450826 1.043796745007351 1.08138560018265 0.8019090206541728 1.0 20.130713530874992 1.9688056272936703 1.2649095467001374 0.937838760873054 1.2076675317733756 0.31219064334154534 0.15360491097618406 0.544870443526675 1.613972689856347 0.11421718616535327 0.052013304330276865 93.06912423511187 -1.9688056272936703 0.26982877090032165 SDGTETSTNLHQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDGTETSTNLHQK 13 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ;; 178.15 1.4841e-05 951740000.0 517760.0 544071.0 508899.0 474947.0 532507.0 668409.0 648882.0 552962.0 756720.0 626758.0 False True 514972.4376885442 562180.0743371357 580547.5557705963 535075.2415025872 600318.6100337302 622203.4590955429 617493.098690043 594226.832324142 570236.4955284992 586757.7678454795 0.8776576398459548 0.9581127087612475 0.9894160547755736 0.9119184624812624 1.0231114830197217 1.0604094111616396 1.0523816343453292 1.0127293832105337 0.9718431127420011 1.0 19.16240551055973 3.2259491890637384 24.782206735518383 1.0241923112850233 0.9399173865292656 0.5728224586220612 0.03606382640688661 151.5764661293275 297856.2438568721 0.010680436943536296 0.012847599634513415 1682.477205603208 -3.2259491890637384 -0.08427492475575771 SDHLIQTDTVNLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDHLIQTDTVNLHR 14 0 P51151 P51151 RAB9A Ras-related protein Rab-9A 0 ; 198.87 1.24e-08 323130000.0 131077.0 214744.0 222905.0 194798.0 227620.0 240149.0 200726.0 113190.0 193490.0 168171.0 False True 130371.29599602365 221891.62422451074 254288.08647500724 219459.40682691094 256606.05779055983 223548.06487993943 191016.1165322162 121636.81256717391 145806.9821331659 157438.18280156344 0.8280792732493925 1.4093888806134471 1.615161468139621 1.3939401670020521 1.629884524988379 1.4199100936124338 1.2132769391334675 0.7726004607185164 0.9261221105234834 1.0 17.26442594830649 1.9462857092585346 3.7639884441375404 0.8855857143963961 1.4032940106748637 0.5022336516880133 0.21385874746118524 0.1813496760029417 4.931305728983368 0.1030235276888085 0.059931104442021495 88.36610432235707 -1.9462857092585346 0.5177082962784676 SDHLTVVNAFEGWEEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDHLTVVNAFEGWEEAR 17 0 Q9H2U1-2;Q9H2U1;E7EWK3;H7C514 Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 0 165.9 2.1583000000000003e-09 0.0 23505.0 29935.0 27929.0 26934.0 26153.0 29208.0 27804.0 19064.0 26297.0 27576.0 False True 23378.45169165099 30931.368378910385 31861.160436780156 30343.841638394744 29483.429529024335 27188.91970823643 26459.01429840545 20486.652485030492 19816.456711746698 25816.07607099861 0.9055772700450782 1.1981436796918266 1.2341596898442866 1.1753855061065055 1.1420569666722347 1.0531778583802691 1.024904568209307 0.7935618266962301 0.7676014223559019 1.0 14.655982113613792 2.0351234591872585 2.0712773263203577 0.8337675115003025 1.136405378244089 0.5538207079989106 0.10462677160664828 0.21463020132883984 1.7375935842479944 0.057337217315742865 0.031078645241667768 108.42350914542496 -2.0351234591872585 0.30263786674378657 SDHPGISITDLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 SDHPGISITDLSK 13 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 ;;; 194.12 1.2839e-06 2594820000.0 4473500.0 5218430.0 4837170.0 4918290.0 4865280.0 6042300.0 5999700.0 5379740.0 7098900.0 6214000.0 False True 4449415.173052569 5392122.287942451 5518201.490564651 5540945.009716367 5484844.569226151 5624610.023044263 5709471.589920277 5781203.516566203 5349471.215386494 5817417.199926942 0.7648437476872807 0.9268928293487647 0.948565540500336 0.9524750966435678 0.9428315660934603 0.9668569108495262 0.9814444097273923 0.9937749550846734 0.9195612127412275 1.0 22.47194734103045 5.489045038211678 1.1757421950363638 0.9675157458815877 1.9530571340035994e-12 0.8702716871218801 0.022903533609496086 2.5009502688384084 0.8009591704031569 0.006487222268638316 4.550338695992358 308350.7706722989 -5.489045038211678 -0.9675157458796346 SDHTLT(ph)SPGGGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDHTLTSPGGGGK 13 0 C9J0Q5;Q9Y618;Q9Y618-4 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 SDHT(0.068)LT(0.81)S(0.122)PGGGGK 108.91 0.0017369 0.0 242580.0 258910.0 247400.0 255770.0 234160.0 320120.0 325360.0 235460.0 346910.0 297370.0 True False 241273.97623317147 267527.66283559974 282231.76956065063 288150.45577531104 263978.8880249427 297990.857881424 309621.0938041004 253031.2208416536 261418.6788558406 278391.592008734 0.8666712040125191 0.9609760873353049 1.0137941578055853 1.035054448649695 0.9482286663911204 1.070401788111744 1.1121783225205546 0.9089039615597126 0.9390322350239626 1.0 18.08675611396225 4.6700742123252965 2.57771103349372 1.002393642156484 0.8489935693506667 0.3379768815791582 0.058025839465636574 0.5057919809354913 4.785653500051089 0.015297865737521262 0.15673574031755055 46781.50747881874 -4.6700742123252965 -0.15340007280581736 SDIDEIVLVGGSTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDIDEIVLVGGSTR 14 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;; 249.2 1.0667e-17 546340000.0 403993.0 530310.0 407630.0 418142.0 447623.0 476750.0 437000.0 461910.0 636280.0 460910.0 False True 401817.94657584216 547961.0477708357 465020.76081652456 471078.7343269346 504625.13578061626 443793.3946487847 415860.64049788495 496380.0697314542 479477.3197151834 431494.3291950962 0.9312241653914387 1.2699148301508272 1.0776984292794023 1.091737949849025 1.1694826597650478 1.028503423154207 0.9637684955758882 1.1503744919600565 1.1112019029533806 1.0 18.718982073711558 2.722378204320454 24.767967990937393 1.0601741085144922 1.1144180777092005 0.07954942551157174 0.09343020123506252 2056.4583749626704 3147504.8801829237 0.029275315803008666 0.02768734368120639 527.6891982754856 -2.722378204320454 0.05424396919470831 SDIVQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDIVQLR 7 0 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7BZC3 Q00341 HDLBP Vigilin 0 102.72 0.019862 60653000.0 119040.0 137320.0 122630.0 121870.0 131650.0 145730.0 143360.0 132130.0 168180.0 137510.0 False True 118399.10186658725 141890.6131883071 139895.23808093223 137298.72950438724 148414.8471493158 135656.02811152049 136425.12911161737 141990.2115425451 126734.29249654179 128733.99407176595 0.9197190122181927 1.1022000382370383 1.086700052225088 1.066530487882219 1.1528800004960484 1.053770055762394 1.0597443984808224 1.102973713869152 0.9844664061762166 1.0 16.974033542781125 4.74494931840733 24.54084483224495 1.0745507930675113 0.9197189217880359 0.4643713887116203 0.047163360649240774 451.6630336388993 1734907.5973305355 0.010474506188261123 0.09844507420397025 55583.93877626675 -4.74494931840733 -0.1548318712794754 SDIYVCMISFAHNVAAQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDIYVCMISFAHNVAAQGK 19 0 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ; 307.22 4.7444e-51 671120000.0 884720.0 871060.0 841780.0 805330.0 701270.0 1005560.0 967300.0 953010.0 1151210.0 1113890.0 False True 879956.7658216326 900052.7055331104 960295.3071170754 907284.695427655 790572.577747061 936048.0040336278 920508.0035551566 1024128.4454867234 867509.7209236764 1042800.5865507928 0.843839922196641 0.8631110464850804 0.9208810577038368 0.8700462074236309 0.7581244083895169 0.897628958121069 0.8827267796231917 0.9820942361321161 0.8319037523684991 1.0 19.992031868792523 2.1194398091072273 2.616139734605919 0.9346667671022874 0.8566327459326947 0.26717124783350066 0.05769189607092019 0.3812881163564111 5.180530144346822 0.02640316469269932 0.01680948674693758 131.6557432256772 -2.1194398091072273 -0.07803402116959268 SDKNNEFIVIHNGIITNYK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDKNNEFIVIHNGIITNYK 19 1 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 197.45 4.7292e-16 862560000.0 336190.0 293830.0 318230.0 294270.0 310720.0 406120.0 387680.0 343150.0 556840.0 423260.0 False True 334379.99039422045 303609.9539260144 363034.0178952544 331524.5518278168 350288.3502182709 378045.8803036488 368926.4373185808 368757.5954803935 419614.24327372026 396247.1844288828 0.843867170630291 0.7662135299803131 0.9161806876142249 0.8366609653154969 0.8840147362135757 0.9540657830756128 0.9310512523901469 0.9306251500862764 1.058970914527801 1.0 18.596041158521867 2.712630517143786 0.4396471657769543 1.0176253980174228 0.798229467589083 0.6991573633071022 0.04394642209462197 0.7021756460930194 0.2781244652740525 0.041589024602259585 0.061028735961166855 515.9772067681718 -2.712630517143786 -0.21939593042833982 SDKS(ph)PDLAPTPAPQSTPR ddPTM_BT-474_Trastuzumab_2h_R1 9 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2 F8WAE5 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed 1 SDKS(1)PDLAPTPAPQSTPR;S(0.001)DKS(0.999)PDLAPTPAPQSTPR;S(0.009)DKS(0.991)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;S(0.002)DKS(0.998)PDLAPTPAPQSTPR;S(0.001)DKS(0.999)PDLAPTPAPQSTPR;S(0.056)DKS(0.944)PDLAPTPAPQSTPR 260.25 5.9868e-31 21022380000.0 11244714.0 8284439.0 8267080.0 7089045.0 7487140.0 11365533.0 11551600.0 10067043.0 15062301.0 10500236.0 True False 11184173.709229173 8560181.54406588 9431013.005252475 7986517.370143834 8440582.899244418 10579860.455296895 10992804.976602655 10818296.868068563 11350398.743042909 9830101.948775694 1.1377474788674113 0.8708130992610937 0.9594013423662484 0.8124551924040347 0.8586465270887312 1.076271691832716 1.1182798544598789 1.1005274334327677 1.154657276413757 1.0 23.228774948273593 2.6435710355562465 5.746658349800211 1.101054113607653 0.9204050309067777 0.4480357653061391 0.089619162428919 0.19588500810351095 9.60047671579625 0.02870991367315171 0.027026120318951474 440.1199303470252 -2.6435710355562465 -0.18064908270087532 SDKTEEIAEEEETVFPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDKTEEIAEEEETVFPK 17 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ;; 151.57 2.2358e-07 497569000.0 1172720.0 993234.0 957115.0 846112.0 788749.0 1259830.0 1270590.0 1174363.0 2062520.0 1246940.0 False True 1166406.2058214417 1026293.193267367 1091868.4726072852 953229.6924461832 889191.5098684047 1172740.9174208273 1209126.7075748465 1261999.9303544832 1554239.582352048 1167359.221640955 0.999183613919481 0.8791579954495141 0.9353320317909063 0.8165692914184802 0.7617119849522151 1.0046101454291914 1.0357794628761994 1.08107248133997 1.3314150036586476 1.0 20.154817147107966 2.112468552357867 1.6128281066248695 1.1500455569996113 0.8815412550889805 0.5472671025554241 0.10081947987017963 0.2831982351784494 1.4084192559441158 0.05984052057393307 0.03226853684247498 129.55928791102093 -2.112468552357867 -0.2685043019106308 SDKVPDNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDKVPDNK 8 1 Q9Y678;H0Y8X7 Q9Y678 COPG1 Coatomer subunit gamma-1 0 ; 101.65 0.0047853 1035200000.0 2531600.0 2004180.0 1885830.0 1736030.0 1822360.0 2304700.0 2328500.0 2384700.0 3658100.0 2574600.0 False True 2517970.1468872027 2070887.9197476073 2151338.4720717934 1955811.2200008347 2054426.7440260313 2145381.5136802425 2215861.5592661877 2562658.4232612364 2756610.2710286556 2410286.823774044 1.0446765596737353 0.8591873379222962 0.8925653373913452 0.8114433521809706 0.8523577873645741 0.8900938645637987 0.9193352166264496 1.0632172063441843 1.1436855746123757 1.0 21.20077340649079 1.7631234018739117 3.1774640449949385 1.0825236670708713 0.8860069176474916 0.5935860203931524 0.06580460233001427 0.14460992371664225 2.9290856202327995 0.03635467584088724 0.01764501009665781 57.9593360610679 -1.7631234018739117 -0.1965167494233797 SDKVPENK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDKVPENK 8 1 Q9UBF2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 ; 105.4 0.0040091 383090000.0 919730.0 680510.0 633610.0 570720.0 634390.0 815140.0 885220.0 878640.0 1298730.0 880530.0 False True 914778.2758716095 703160.3639730179 722816.780563152 642973.09348276 715175.8061758773 758791.2904331628 842398.5267312063 944208.5784435172 978675.3935904023 824333.82154034 1.1097182378884638 0.8530043843877486 0.8768495986401548 0.7799911597480114 0.8675803266685197 0.9204903045410594 1.0219143079160709 1.14542016082657 1.1872318810863074 1.0 19.652869162759036 2.090680186234003 2.4531779682526906 1.1241341694384812 0.8882737921914835 0.5167487017727024 0.09119641470666724 0.21162421826234448 2.4906345092248556 0.044356304742696626 0.02685822698907193 123.21971110538132 -2.090680186234003 -0.2358603772469977 SDLDYIRS(ph)PLPFQNR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDLDYIRSPLPFQNR 15 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;H7BYL6 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 1 SDLDYIRS(1)PLPFQNR;SDLDYIRS(1)PLPFQNR;SDLDYIRS(1)PLPFQNR;SDLDYIRS(1)PLPFQNR 189.77 1.4783e-07 1137350000.0 1091480.0 1246830.0 1125470.0 1223380.0 1061380.0 1208400.0 1041920.0 999060.0 1346630.0 1061050.0 True False 1085603.5929548296 1288329.9828253489 1283926.393239392 1378259.7825640235 1196540.4517078656 1124866.1522676295 991518.3490790768 1073614.9303238876 1014771.0804175172 993332.8805893916 1.0928900212290258 1.296977083916644 1.2925439380176134 1.3875104806217997 1.2045714735607074 1.1324161056666049 0.998173289593275 1.0808208922741598 1.0215820902006236 1.0 19.921917741735164 2.6423689252881575 2.308484039896849 1.036699090143542 1.2714807772369994 0.6811741950288954 0.07398890017824815 0.17738492061406075 1.8627638133613826 0.027126677635037486 0.025314329166772207 438.90337992267155 -2.6423689252881575 0.23478168709345737 SDLEDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SDLEDKR 7 1 P11233;H7C3P7 P11233 RALA Ras-related protein Ral-A 0 ;; 103.92 0.013257 987950000.0 646310.0 639260.0 622540.0 476210.0 608660.0 783860.0 619760.0 579930.0 923920.0 713620.0 False True 642830.3387717921 660537.3826591696 710188.2207853168 536498.1371730882 686169.243189536 729673.6032079635 589779.8410868854 623207.32142487 696232.2958937152 668076.1606391796 0.9622111619081968 0.988715690778732 1.0630348194221548 0.8030493658983361 1.027082365179811 1.092201228239982 0.8828033027291612 0.9328387362731496 1.042145097989423 1.0 19.34965305365299 SDLESR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDLESR 6 0 P61019;P61019-2;A0A3B3ITL1;Q8WUD1;H7C125;Q8WUD1-2 P61019 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B 0 118.69 0.050377 177780000.0 213090.0 292950.0 262920.0 280710.0 265960.0 217870.0 237820.0 242230.0 298590.0 243860.0 False True 211942.74711652484 302700.6636579853 299936.8506583922 316247.8572181554 299828.4295315761 202809.15971081442 226315.73803937517 260306.43261901665 225006.49540101324 228296.64602095028 0.9283655752747034 1.3259093768298598 1.3138031411590148 1.385249686012181 1.3133282278008653 0.8883580343629011 0.9913230964357079 1.1402113747879103 0.9855882656303452 1.0 17.80055013906081 2.7512252948230564 24.778513630534693 1.0196641868537075 1.2680516903664696 0.4778464713842894 0.13066626234209383 629.6007482588942 1231816.3690245417 0.040851296903678995 0.04306200733527773 563.9301246328022 -2.7512252948230564 0.24838750351276206 SDLNGLPS(ph)PVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SDLNGLPSPVEER 13 0 E7EWN3;Q9C0A6 E7EWN3 SETD5 SET domain-containing protein 5 1 SDLNGLPS(1)PVEER 152.02 4.722300000000001e-05 237410000.0 283170.0 265000.0 231150.0 243260.0 226800.0 270490.0 254310.0 249070.0 335280.0 241810.0 True False 281645.4441831446 273820.36480411695 263693.910808183 274056.69105799013 255681.63565108075 251791.6629649708 242008.05374145802 267656.86815183336 252654.7365218253 226377.47877604325 1.2441407409691063 1.2095742309905715 1.1648416275059639 1.2106181787151904 1.1294481987937868 1.112264631297842 1.0690465105006235 1.18234759746851 1.11607717290543 1.0 17.788370912843956 7.999999999986938 0.025803652931541462 0.28242503869344077 2.341075467115306 0.7292573218600729 0.0364317423163268 1046.3015493628168 2.0745544003050638 56.19012074977292 120.60598444551434 99999999.99699226 -7.999999999986938 2.058650428421865 SDLPNPDTLSAELHCWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDLPNPDTLSAELHCWR 17 0 O43422 O43422 PRKRIR 52 kDa repressor of the inhibitor of the protein kinase 0 88.264 0.0041784 0.0 20390.0 31734.0 28450.0 27682.0 31685.0 32084.0 25220.0 27246.0 28539.0 34436.0 False True 20280.22250554198 32790.2470063919 32455.512708167 31186.538361700605 35719.8969382914 29866.108597612205 24000.01225024407 29279.234872384663 21505.945853007543 32238.264997857128 0.6290730132930542 1.017121951462694 1.0067388152037435 0.9673764504316088 1.1079968770238007 0.9264179880523161 0.744457316541053 0.9082137290679523 0.6670937736394015 1.0 14.976486482399768 2.4333617991036736 10.523538530983181 0.8294007819792841 0.9605098994336949 0.12565643238352509 0.14348077359201558 0.9117599106741197 213.89576169636996 0.0478830297052326 0.04007389873413593 271.24503606805706 -2.4333617991036736 0.13110911745441078 SDLYSSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 SDLYSSGR 8 0 P38159;P38159-2;H3BUY5 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 ;;;; 259.66 8.4454e-13 3855740000.0 1815830.0 2257100.0 2047960.0 2077790.0 1989360.0 2132310.0 2126670.0 1933630.0 2530560.0 2128380.0 False True 1806053.7730376767 2332226.2090542396 2336294.966812569 2340838.0009593936 2242693.2041394827 1984908.428617831 2023794.8474316616 2077927.2893741864 1906937.3957667318 1992544.9662022074 0.9064055284433641 1.1704760738722324 1.1725180643052435 1.1747980801763451 1.1255420791903423 0.9961674452953845 1.0156834007560775 1.0428508889988655 0.9570360659922051 1.0 20.92618085152483 2.7410779636171663 24.53126474201416 1.0092147604827122 1.120389543396442 0.3262831316796716 0.07625813642821505 204.90042688526893 1996737.170823367 0.023682610357662656 0.02406552827913242 550.9065851016895 -2.7410779636171663 0.11117478291372973 SDNKDDDIDIDAI ddPTM_BT-474_Trastuzumab_2h_R1 1 SDNKDDDIDIDAI 13 1 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 88.596 0.06390599999999999 94388000.0 460340.0 357950.0 323290.0 290490.0 292250.0 479690.0 440350.0 393080.0 674890.0 484580.0 False True 457861.5805885822 369864.14936465584 368806.42191294534 327266.00421538955 329466.305198538 446530.1593688006 419048.5881996425 422413.62561979616 508572.40256267745 453653.68953019014 1.0092755578881103 0.8153006531208687 0.812969078450318 0.7214005127001405 0.7262506903442971 0.9842974270334564 0.923719122914254 0.9311367577705659 1.1210586716254018 1.0 18.791231866558334 2.72016604821613 24.181020137545012 0.9774476068603128 0.8114033198879768 0.4827252338257434 0.08985191148876846 511.5551437185513 672475.8972963702 0.030011383904152037 0.02835061526022431 525.0081535754783 -2.72016604821613 -0.16604428697233609 SDPDGGDS(ph)PLPASGGPLTCK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDPDGGDSPLPASGGPLTCK 20 0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 1 SDPDGGDS(1)PLPASGGPLTCK;SDPDGGDS(1)PLPASGGPLTCK 342.3 1.6667999999999996e-80 534030000.0 534130.0 456540.0 439210.0 352410.0 360570.0 582330.0 527270.0 484030.0 684040.0 508290.0 True False 531254.3034274221 471735.65791574214 501046.9503182436 397025.0698665889 406486.4522341718 542074.8977573712 501763.9357329972 520150.77645453735 515467.50766639557 475850.49703103723 1.1164311201565713 0.991352664038456 1.0529503561400355 0.8343483349155629 0.8542314335497244 1.139170603245192 1.0544571012610917 1.0930970540115053 1.0832551628768696 1.0 18.86014885244328 2.720029569247035 24.843202889592703 1.0791315555854206 0.9681440475561552 0.2744368415168281 0.08443018152709532 1024.2456236218675 1373128.763250465 0.028544615276785798 0.02695892371171731 524.8431933534134 -2.720029569247035 -0.11098750802926538 SDPEGENIHAGLLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDPEGENIHAGLLK 14 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ;; 159.52 4.8997e-06 1114030000.0 2372140.0 2304780.0 2077660.0 1963370.0 2041070.0 2485760.0 2404520.0 2217690.0 2998770.0 2521540.0 False True 2359368.66180953 2381493.2090310697 2370176.4686555443 2211932.440691138 2300988.166130297 2313925.2620496363 2288204.1814415874 2383185.289001641 2259763.3149592998 2360613.158400994 0.9994728079071173 1.0088451809885781 1.0040511975545492 0.937016059924631 0.974741735189223 0.9802221316164389 0.9693261995504363 1.0095619777939122 0.9572781151868158 1.0 21.170730210982892 -0.8825225914889919 7.62484087461329 0.9999977607201226 0.9834532434973073 0.04999374223390751 0.022660034969674447 0.0 0.0 0.022247095133523263 0.005243690571136975 0.13106218635824152 0.8825225914889919 -0.016544517222815247 SDPES(ph)PIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDPESPIKK 9 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 SDPES(1)PIKK 84.71799999999998 0.0093731 328080000.0 941420.0 741920.0 590170.0 561860.0 606430.0 892260.0 867620.0 773430.0 1389700.0 885020.0 True False 936351.4993215938 766614.3586998894 673260.8061504018 632991.4183911966 683655.2659077811 830580.1663541171 825649.9059697359 831147.273997962 1047227.0560259493 828537.2658962581 1.1301259917484934 0.9252623753388033 0.8125896490873127 0.7639866599198377 0.8251352039889805 1.0024656711797377 0.9965151115763046 1.0031501396607436 1.2639468363479425 1.0 19.660207062788338 1.9603545280836 1.3376843878117803 1.108203473047565 0.889468936079546 0.3388893657145027 0.11668696169930134 0.5013827873769633 1.6644100185653337 0.0878050450344366 0.03994253466639082 91.27556461127783 -1.9603545280836 -0.21873453696801892 SDPMVQCIIEESGEHIIAGAGELHLEICLK ddPTM_BT-474_Trastuzumab_2h_R1 11 SDPMVQCIIEESGEHIIAGAGELHLEICLK 30 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;;;;;;; 346.42 2.930699999999998e-120 1887292000.0 798514.0 813768.0 815881.1 774962.0 758337.9 920504.0 896509.0 659700.0 1154552.0 911569.0 False True 794214.8893472459 840853.7759468565 930750.0671143509 873072.1097413552 854907.7365441177 856871.7251133416 853141.43467304 708930.1638887238 870028.129804182 853391.8859865151 0.9306567151492646 0.9853079104154305 1.0906478985775805 1.0230611798377833 1.001776265491264 1.0040776566826668 0.9997065225043879 0.8307205347625323 1.0194942605980317 1.0 19.702848867958416 1.9638821622294376 24.957377617334046 0.9272504367770247 1.008798367262612 0.1147669018816867 0.060623206731316666 746.3520408464431 515727.3453830807 0.024675089069970287 0.015933739755574515 92.01998586748616 -1.9638821622294376 0.08154793048558728 SDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACK 41 0 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 354.52 1.6418999999999993e-154 1249300000.0 234800.0 250680.0 251430.0 245350.0 223230.0 281230.0 338720.0 98010.0 358030.0 265590.0 False True 233535.8628887325 259023.7322607401 286829.158531263 276411.2848436975 251657.01731212885 261789.23204421133 322334.81956394366 105324.00388469578 269798.3038562066 248639.8188169613 0.9392536722392492 1.0417628740769918 1.1535930161790182 1.1116935580104346 1.0121348161751544 1.0528853877460798 1.2963925935018223 0.42360071040041697 1.0850969291238959 1.0 17.923697832008205 1.756736774684437 24.999999999996557 0.7809830293793142 1.0844321393206067 0.26076190808774635 0.18648033356960111 7.5731996493646445 10427.024147101323 0.08069582333290187 0.04475067956456251 57.1132369166864 -1.756736774684437 0.3034491099412925 SDPVVSYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDPVVSYR 8 0 P13639 P13639 EEF2 Elongation factor 2 0 98.009 0.018208 619430000.0 616980.0 419490.0 334170.0 395490.0 328180.0 346620.0 393100.0 447250.0 667540.0 519710.0 False True 613658.2482329227 433452.4710629405 381218.2313422901 445558.9934494966 369971.7777247431 322658.9752557147 374084.25121217046 480626.0660894822 503033.711577723 486541.6628538837 1.2612655710374678 0.8908845925351171 0.783526387249546 0.9157673997248312 0.7604112987048586 0.6631682338632825 0.7688637577672645 0.9878415411956653 1.0338964779030488 1.0 18.89220382357295 -0.4360935954694214 10.166343333901791 0.9999999999990146 0.8842648105999626 0.030921059078699575 0.16247233751415804 0.0 0.0 0.15975239408790506 0.037654000390114475 0.3663586116335219 0.4360935954694214 -0.11573518939905192 SDPYLEFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SDPYLEFHK 9 0 O75131;A0A087WYQ3 O75131 CPNE3 Copine-3 0 ; 127.4 0.00044656 562020000.0 903140.0 981020.0 1158120.0 824530.0 777610.0 1442140.0 1008420.0 898570.0 1819690.0 1104810.0 False True 898277.5945882867 1013672.6576608862 1321173.2294405045 928915.4134590335 876634.02424443 1342448.2562324058 959638.8720615039 965625.8562460062 1371251.7820967536 1034300.079924571 0.8684883739482994 0.9800566366917528 1.2773596899817068 0.8981101630841767 0.8475625606722962 1.2979291815681842 0.9278147519156028 0.9336031921378436 1.3257775076230833 1.0 19.980223382647434 SDPYSTGHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDPYSTGHLR 10 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 0 107.55 0.0022684000000000003 157700000.0 73359.0 97910.0 98519.0 101480.0 92961.0 104930.0 107530.0 86338.0 112760.0 114940.0 False True 72964.04329495107 101168.87516215515 112389.61885750096 114327.3575950211 104799.03232698468 97676.43607865123 102328.36309550934 92780.97997548064 84971.80890658853 107604.43079491526 0.6780765694863833 0.9401924661910463 1.0444701768062494 1.062478159592881 0.9739285971106765 0.9077361903880526 0.9509679326359558 0.8622412598632966 0.7896683089987014 1.0 16.715377958969295 -0.4310533455875194 8.565428098158021 1.0000000126295652 0.9205594339421079 0.05028823714239761 0.10915542513299384 0.0 0.0 0.10796770444752717 0.02544823198799715 0.3706351928447223 0.4310533455875194 -0.07944057868745724 SDQDYILK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDQDYILK 8 0 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3;H0YIN7;F8VZ69 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;; 128.12 0.0026686 1123430000.0 725334.0 770024.0 703787.0 671108.0 749246.0 825937.0 855527.0 805278.0 1084616.0 861098.0 False True 721428.882336183 795653.7833506624 802874.0921737346 756070.2039897459 844658.0369710302 768841.9192365672 814141.8905794817 865371.9334788283 817326.9199097949 806141.9884169118 0.8949154028720337 0.9869896305899586 0.9959462522854136 0.9378871400489931 1.0477782439167516 0.9537301496308438 1.009923688726697 1.0734733408170827 1.0138746420030147 1.0 19.62067444215257 7.606250312366018 0.35438288453021666 1.0283788801527936 2.3018449443853466e-17 0.4209250822227302 0.03764205041023666 44.484998433173004 0.8181582271814315 0.03137208632097805 29.359663749304353 40387810.7313282 -7.606250312366018 -1.0283788801527936 SDQGWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDQGWR 6 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 105.27 0.077053 238770000.0 388310.0 418920.0 383260.0 419620.0 376500.0 393570.0 447210.0 332830.0 434010.0 392360.0 False True 386219.38210529694 432863.4989575125 437219.6766443609 472743.8489753923 424445.043309665 366363.4322641262 425576.74379189743 357667.4646764948 327054.05093604524 367319.24888370396 1.0514542411785692 1.1784394645066922 1.1902988421464074 1.2870108234514728 1.155520829903601 0.9973978586135017 1.158601802342894 0.9737237178924294 0.890380920493478 1.0 18.486674975029707 2.0094358248798403 1.0441421500851489 0.9417895467169166 1.1737225489133847 0.5406165032883965 0.07938785314449114 0.3979911682730032 0.7997249445605135 0.0637936005440787 0.030105547545114773 102.19645350966583 -2.0094358248798403 0.23193300219646806 SDQWKPLNLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDQWKPLNLEEK 12 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 108.71 0.0015287 1575300000.0 376280.0 304770.0 262110.0 239320.0 289410.0 394060.0 304260.0 433180.0 566770.0 379640.0 False True 374254.1502886379 314914.0852126444 299012.80969903845 269617.8874619676 326264.6480325364 366819.5597174627 289541.78141392756 465506.0912434698 427097.12782890344 355411.05017384345 1.0530177666270581 0.8860559767587681 0.8413154558722394 0.7586086232549282 0.9179924143409425 1.0320994790061788 0.8146673584636802 1.3097681994292951 1.2016990682197302 1.0 18.43912901169303 1.7448913809498652 16.637252376951395 1.1909568092976452 0.8979752834812715 0.5525960806425905 0.11083551253059516 0.09768999662551485 246.65504447952682 0.050681756289500175 0.02802158788915805 55.576524044045605 -1.7448913809498652 -0.2929815258163737 SDRPELTGAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SDRPELTGAK 10 1 H0YL12;P13804-2;P13804;H0YK49;H0YNX6;H0YKF0;H0YLU7 H0YL12 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial 0 ;; 117.98 0.00080835 1138240000.0 775200.0 795770.0 816050.0 627960.0 794040.0 1428840.0 841220.0 694080.0 1226140.0 929010.0 False True 771026.4093328167 822256.7233968758 930942.7467662459 707459.6716138099 895156.2873561912 1330067.6539275735 800526.9748275307 745875.774066826 923974.2264342366 869719.7864345236 0.8865227874068414 0.9454271780659079 1.0703938915575442 0.8134340308780253 1.0292467773165725 1.5293059611536237 0.9204424083639011 0.8576046971687229 1.06238151741049 1.0 19.730191130756022 4.438060610311297 4.489064593292171 1.0247199698328797 0.8972761989872476 0.06390018366263805 0.18505190928096693 0.6254269422417708 27.967135422146367 0.048196897607500934 0.15691473037272397 27419.56813814161 -4.438060610311297 -0.12744377084563208 SDS(ph)DSSTLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSDSSTLPR 10 0 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 S(0.003)DS(0.997)DSSTLPR;SDS(0.999)DS(0.001)STLPR;SDS(0.996)DS(0.004)STLPR;SDS(0.992)DS(0.008)S(0.001)TLPR 206.27 1.6104e-07 1835160000.0 1906440.0 1993460.0 1782280.0 2007540.0 1983230.0 2007490.0 1936840.0 1868950.0 2279910.0 2241330.0 True False 1896175.938865397 2059811.1110279814 2033209.5321445302 2261694.358162287 2235782.5849748375 1868716.9414231563 1843147.6497526858 2008420.5393358052 1718056.7297288065 2098286.400500848 0.9036783245665565 0.981663470981043 0.9689857074130661 1.0778768606718485 1.0655278442643341 0.8905919330064309 0.8784061362227472 0.9571717849652972 0.8187903850107007 1.0 21.000780177831544 2.719211308374281 24.832132777367768 0.9080788488191915 1.001206817545056 0.33332695574620375 0.06400449202580161 887.0570119467387 1138412.1947973194 0.020890892626199208 0.019725184048675445 523.8552592522532 -2.719211308374281 0.09312796872586437 SDS(ph)ENVYEVIQDLHVPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSENVYEVIQDLHVPPR 18 0 A0A0G2JRG8;A0A0G2JNY3;A0A0G2JP16 A0A0G2JRG8 1 S(0.42)DS(0.58)ENVYEVIQDLHVPPR;S(0.132)DS(0.61)ENVY(0.258)EVIQDLHVPPR;S(0.048)DS(0.951)ENVY(0.001)EVIQDLHVPPR;S(0.137)DS(0.549)ENVY(0.314)EVIQDLHVPPR 171.58 8.3168e-12 153956000.0 179348.0 169573.0 145239.0 150567.0 142136.0 169297.0 148121.0 142444.0 172418.0 156496.0 True False 178382.41029543613 175217.13479595684 165687.38875998103 169628.76676201774 160236.17709392426 157593.8968722713 140955.82135283094 153073.89459597584 129927.89418283243 146508.29129703357 1.21755846523239 1.1959537118668488 1.1309079321938402 1.1578100137562133 1.0937004020411276 1.0756653802805096 0.962101326177196 1.0448138684904258 0.8868296328664038 1.0 17.16062278737533 2.8598178289417944 0.6541947724981577 0.9599414632420118 1.2084973088631437 0.8178270623939268 0.04267167448428982 0.3064508833492244 0.2864658929406292 0.029768248874239435 0.03559342979960983 724.1321487299343 -2.8598178289417944 0.24855584562113187 SDS(ph)FENPVLQQHFR ddPTM_BT-474_Trastuzumab_2h_R1 6 SDSFENPVLQQHFR 14 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 S(0.003)DS(0.997)FENPVLQQHFR;S(0.002)DS(0.998)FENPVLQQHFR;SDS(1)FENPVLQQHFR;S(0.005)DS(0.995)FENPVLQQHFR;S(0.001)DS(0.999)FENPVLQQHFR;S(0.002)DS(0.998)FENPVLQQHFR 302.9 3.337199999999999e-44 9586730000.0 3119160.0 3692880.0 3022220.0 3385590.0 2221691.0 2710150.0 3488140.0 2825030.0 3109980.0 3477420.0 True False 3102366.7891312568 3815795.2784069 3447722.3063928485 3814205.3468676344 2504610.1798557565 2522803.709506876 3319405.3422111943 3035848.0838116747 2343567.1005969476 3255488.0784309544 0.9529651819909298 1.1721115809602338 1.0590492802709157 1.171623195962052 0.7693501310755535 0.7749387031153836 1.0196336961587174 0.9325323916636367 0.7198819483088003 1.0 21.634442424710357 3.2431434194633786 24.999997467214804 0.8765786716931202 1.0927434793325523 0.4933880528450968 0.10881431567847068 100.89231655401274 550381.5186028718 0.030572748040947548 0.04005094750910973 1750.4246455787365 -3.2431434194633786 0.21616480763943213 SDS(ph)LILDHQWELEK ddPTM_BT-474_Trastuzumab_2h_R1 9 SDSLILDHQWELEK 14 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 SDS(1)LILDHQWELEK;S(0.003)DS(0.997)LILDHQWELEK;SDS(1)LILDHQWELEK;S(0.001)DS(0.999)LILDHQWELEK;S(0.001)DS(0.999)LILDHQWELEK;SDS(1)LILDHQWELEK;S(0.071)DS(0.929)LILDHQWELEK;S(0.001)DS(0.999)LILDHQWELEK;SDS(1)LILDHQWELEK 287.65 4.8272e-34 20883583000.0 11519993.0 8991260.0 8790068.0 8160325.0 8785451.0 11115765.0 10803732.0 10916356.0 15301900.0 10992904.0 True False 11457970.637679532 9290528.653768564 10027633.169759296 9193421.308303032 9904226.109402213 10347358.329246242 10281114.208895877 11730989.91685259 11530951.779955 10291327.455221387 1.113361778403644 0.9027531865245373 0.974377038665862 0.8933173439776884 0.9623856740052738 1.0054444749007017 0.9990075870804861 1.1398908418661557 1.1204532972182009 1.0 23.294925748440164 1.9000078279395136 4.388311911066518 1.0989858875643974 0.9697193952071398 0.35329262877682943 0.06662463437404002 0.20889693538490167 6.485848171836002 0.03015885881044937 0.01740559175783356 79.4342552220065 -1.9000078279395136 -0.12926649235725762 SDS(ph)LLSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 SDS(0.998)LLS(0.002)FR;S(0.001)DS(0.992)LLS(0.007)FR;SDS(0.989)LLS(0.011)FR;SDS(0.996)LLS(0.003)FR 188.87 0.00020421 256756000.0 1009520.0 479098.0 398140.0 467388.0 409553.0 457719.0 360288.0 458950.0 748210.0 583460.0 True False 1004084.856488215 495044.48730914335 454194.6513050827 526559.2728776289 461707.1469391843 426077.96288463 342859.493006183 493199.1795008781 563823.6710003425 546223.0832747623 1.8382321934628643 0.9063045895849207 0.8315185959957184 0.9640004038656821 0.8452721261267814 0.7800438610726076 0.6276913288809457 0.9029262852532873 1.0322223433328004 1.0 19.05913075782296 4.738725668108126 4.987381077316642 0.8583976100247477 1.88700750246135 0.8705142717173764 0.1112080566169609 0.05456477689159952 4.23620280654242 0.02721234942020534 0.19413342598529626 54793.074278716995 -4.738725668108126 1.0286098924366023 SDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;A6NNK5;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.14)DS(0.86)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.152)DS(0.848)PEIPFQAAAGPSDGLDASSPGNSFVGLR 215.47 5.6945e-35 1340770000.0 855550.0 845240.0 756350.0 720090.0 746740.0 873750.0 827470.0 853850.0 964210.0 971660.0 True False 850943.8138605405 873373.3024416292 862837.5056879469 811253.32016751 841832.9127252563 813349.7190862623 787442.1148576312 917568.6227624477 726593.365252054 909647.8269200224 0.9354651203221714 0.9601224524427051 0.9485401714303319 0.8918323071405926 0.9254492648826737 0.8941369341145837 0.8656560171465834 1.0087075411032909 0.7987633716580484 1.0 19.79494858381912 3.788051330682371 15.353749383069541 0.9151341834198604 0.9492543916830478 0.0735254088291668 0.05774726533283533 16.011248522722294 4963.336600636549 0.014078642805411356 0.02537882063694899 6138.345519867173 -3.788051330682371 0.0341202082631874 SDS(ph)PENKYSDSTGHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSPENKYSDSTGHSK 16 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;E9PMZ7;C9JMU2 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.007)DS(0.993)PENKYSDSTGHSK 164.99 4.3383e-09 322580000.0 285220.0 307190.0 266940.0 289150.0 293070.0 392300.0 459190.0 362300.0 662620.0 402960.0 True False 283684.4072109211 317414.63344972336 304522.8317159263 325756.3603527829 330390.72733801726 365181.2243748684 436977.2254238531 389336.66572212265 499326.17965310055 377242.747808587 0.7519943295367539 0.8414068535275848 0.8072330972163346 0.8635192120858787 0.8758040525822316 0.9680271562441312 1.1583449329702566 1.0320587154658096 1.323620354675337 1.0 18.52513364079207 2.5815341211346 1.2803312114016592 1.1354785108359202 0.8106908327809045 0.7282679754531641 0.08651269812805149 0.22019589997791014 0.7349645308489807 0.04080608039418395 0.03300665092005305 381.5347690738669 -2.5815341211346 -0.32478767805501574 SDS(ph)RS(ph)ESPEPGYVVTSSGLLLPVLLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSRSESPEPGYVVTSSGLLLPVLLPR 27 1 Q96Q42 Q96Q42 ALS2 Alsin 2 S(0.101)DS(0.84)RS(0.65)ES(0.409)PEPGYVVTSSGLLLPVLLPR 127.83 3.4926e-05 18622000.0 8913.7 7886.8 6570.5 7939.5 8515.3 9371.3 8884.2 7669.6 9040.8 11225.0 True False 8865.709629605177 8149.307370328726 7495.569288190203 8944.639885944729 9599.672980862644 8723.484088667354 8454.437305060203 8241.944497439676 6812.815980513349 10508.610889794003 0.8436614241959974 0.7754885451361949 0.7132787926775292 0.8511724318036927 0.913505417750873 0.8301272337659423 0.8045247267905961 0.7843038993330963 0.6483079497338681 1.0 13.359284354762394 -2.304014445331822 2.351804058362423 2.0457478856429963 0.7984508493420093 0.42967166706254 0.070445709964808 4087741.3095371523 1041293.9998117554 22469065.169181842 0.017495829566554245 0.004965758042670335 2.304014445331822 -1.247297036300987 SDS(ph)YSQSLK ddPTM_BT-474_Trastuzumab_2h_R1 7 SDSYSQSLK 9 0 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 1 SDS(1)YSQSLK;SDS(0.999)YS(0.001)QSLK;SDS(1)YSQSLK;SDS(1)YSQSLK;SDS(1)YSQSLK;SDS(1)YSQSLK;S(0.001)DS(0.998)YS(0.001)QSLK 285.24 9.9986e-22 15337630000.0 6671120.0 4876790.0 5014170.0 5020250.0 4620120.0 6916520.0 7166040.0 6833610.0 9780230.0 6505080.0 True False 6635203.431151107 5039111.007068187 5720121.552053068 5655813.135262168 5208464.896403316 6438397.252136782 6819391.26826879 7343568.678568473 7370023.364867717 6089920.225120813 1.089538645150229 0.8274510700948009 0.9392769265609865 0.9287171138846843 0.8552599547886508 1.0572219362707753 1.1197833495648961 1.2058563014136676 1.210200313374632 1.0 22.53799189900317 2.452761090250254 2.8262948750370906 1.1570775235770878 0.9235469611707574 0.5554746947679428 0.08596614568654923 0.16881651355407473 2.7614482428419205 0.0303707664966268 0.025526529972398685 283.6358290052685 -2.452761090250254 -0.2335305624063304 SDSAFFWEER ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSAFFWEER 10 0 O75116;C9JFJ0;D6REE7;Q13464;A0A0U1RQV4 O75116;Q13464 ROCK2;ROCK1 Rho-associated protein kinase 2;Rho-associated protein kinase 1 0 ;;; 239.6 7.0477e-12 753790000.0 639880.0 697880.0 656210.0 628870.0 584240.0 655930.0 666480.0 603470.0 724510.0 650840.0 False True 636434.9571773508 721108.5139226317 748598.6641204304 708484.8775205067 658639.500938216 610587.1029931355 634239.8161991545 648503.9957585686 545964.2184366132 609302.8339878422 1.0445297833458789 1.1834977185368227 1.228615102970894 1.1627795539428651 1.0809723247592153 1.0021077679827743 1.0409270740595469 1.0643377309016564 0.8960473970936875 1.0 19.216799925067264 3.0294318765380863 2.854718966972798 1.0131794891940724 1.162332799324263 0.5876898339541401 0.0602569539426641 0.19788818935316724 3.2890879599794096 0.019226476897040788 0.02267182291767928 1070.1185108832574 -3.0294318765380863 0.1491533101301905 SDSDMWINQSSSLDSSTSS(ph)QEHLNHSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSDMWINQSSSLDSSTSSQEHLNHSSK 28 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 SDSDMWINQSSSLDSST(0.001)S(0.336)S(0.643)QEHLNHS(0.016)S(0.004)K 214.01 8.698899999999999e-27 289110000.0 84083.0 127810.0 151530.0 136220.0 139330.0 195490.0 201140.0 36269.0 147990.0 133640.0 True False 83630.30647049953 132064.07858722334 172864.10687762903 153465.4380330487 157072.84962638916 181976.2364339612 191410.08977058227 38975.57695025025 111519.84746440257 125110.9807850396 0.6684489718307747 1.0555754399698156 1.381686130129831 1.2266344414382502 1.2554681342980205 1.454518502629478 1.5299223822683878 0.31152802660236867 0.8913673825002719 1.0 16.932848892468854 1.7434616330407846 24.999999999990173 0.6840676272817486 1.234257167396572 0.38544690982440866 0.28139203637823523 0.8487594834362928 4347.491711118637 0.1309394208519679 0.072612539487346 55.39386050743943 -1.7434616330407846 0.5501895401148235 SDSFENPVLQQHFR ddPTM_BT-474_Trastuzumab_2h_R1 6 SDSFENPVLQQHFR 14 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;;;; 291.51 1.7359999999999996e-43 14633870000.0 5628335.0 6874350.0 6790660.0 7045010.0 6515410.0 6791850.0 7363930.0 6068116.0 8228028.0 7070306.0 False True 5598032.6697268 7103158.584117667 7746725.902525173 7936907.543658846 7345108.843639376 6322345.395795179 7007708.572955587 6520949.629188694 6200340.749326534 6619073.01788649 0.8457426975951817 1.07313494879465 1.1703641705706322 1.1990965384746803 1.109688444860926 0.9551708190422625 1.0587144988458204 0.9851756600308472 0.9367385331105382 1.0 22.6581977552177 2.745204178371739 24.362152864998865 0.992133856884262 1.0909264512548944 0.19009083902884827 0.09368720785086311 633.8311657956399 2324282.3431293434 0.03028731288715762 0.03143390501669162 556.1656704731793 -2.745204178371739 0.09879259437063237 SDSILLTHDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSILLTHDGR 11 0 O96013;O96013-4;O96013-2;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 ;;; 217.83 1.1063e-11 1716460000.0 1267140.0 1695390.0 1513090.0 1581360.0 1348200.0 1508400.0 1523620.0 1267390.0 1835080.0 1531180.0 False True 1260317.8590324898 1751820.0312651014 1726119.919985956 1781560.0138595067 1519885.2785925353 1404127.8583916675 1449916.6798063791 1361969.077476017 1382849.122812188 1433458.7814908477 0.8792145789652318 1.2220930618201291 1.204164320784118 1.2428400710668648 1.0602922792183818 0.9795383561230306 1.0114812497771402 0.9501278272260616 0.964694025854009 1.0 20.45106899040509 2.9785377282487064 4.429684203922032 0.980378718840442 1.1490497843857093 0.3639445952882314 0.0963735306519745 0.20585745610292955 9.812669506372409 0.029199014062230595 0.03279396727607383 951.7825282521708 -2.9785377282487064 0.16867106554526723 SDSKSS(ph)PQAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDSKSSPQAGR 11 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 SDS(0.008)KS(0.036)S(0.956)PQAGR;SDS(0.054)KS(0.084)S(0.862)PQAGR;SDS(0.02)KS(0.034)S(0.946)PQAGR;SDS(0.021)KS(0.03)S(0.949)PQAGR 133.48 9.7428e-05 1178840000.0 1115150.0 933750.0 861100.0 844840.0 852520.0 707570.0 1111080.0 980600.0 1372090.0 1118980.0 True False 1109146.1563048118 964829.3042862052 982335.3951846246 951796.657376603 961083.3687180737 658657.3513406208 1057332.8156622197 1053777.3513859068 1033956.8045640395 1047565.7383930251 1.0587842993092267 0.9210202939304427 0.93773150379234 0.9085794069942258 0.9174444461999911 0.6287503754666575 1.0093235936526306 1.0059295686802532 0.9870089930109189 1.0 19.998609350220416 SDSPES(ph)DAER ddPTM_BT-474_Trastuzumab_2h_R1 1 SDSPESDAER 10 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 SDS(0.016)PES(0.984)DAER 161.7 7.3344e-06 103360000.0 129570.0 137290.0 121630.0 108840.0 110370.0 121240.0 108520.0 116630.0 117380.0 123540.0 True False 128872.40951658036 141859.61465644257 138754.44677308784 122619.13284038349 124424.96528575757 112858.96416826143 103270.47301334208 125333.52283514 88453.2718114169 115655.57143208482 1.1142775736684396 1.2265696576471914 1.1997212503901475 1.0602094764832648 1.075823358486645 0.9758195197239969 0.8929139490178776 1.083679076444132 0.7647990556456535 1.0 16.819475240487296 3.1855727558650826 1.163183906531977 0.9506275366818598 1.1862909317943477 0.5860415761059472 0.08450830664228418 0.3373956464212194 0.9729221437681919 0.03267409096797099 0.04828198618653176 1533.1080211794729 -3.1855727558650826 0.2356633951124879 SDSQASLTVPLS(ph)PQVVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SDSQASLTVPLSPQVVR 17 0 Q8TEV9;Q8TEV9-2 Q8TEV9 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 SDSQASLTVPLS(1)PQVVR;SDSQASLT(0.003)VPLS(0.996)PQVVR;SDSQASLTVPLS(1)PQVVR 321.67 1.3206999999999995e-58 533360000.0 526960.0 598290.0 568600.0 540480.0 596000.0 603630.0 567840.0 567860.0 612610.0 587730.0 True False 524122.90591076005 618203.7209760571 648653.9376402014 608904.7125833369 671897.0672312346 561902.4788921782 540371.4098405465 610236.5967346525 461640.47405343375 550220.5682190321 0.9525687264059473 1.1235561821635904 1.178898018552416 1.1066556718413036 1.221141313211987 1.0212313231236672 0.9820996179580026 1.1090763086336117 0.8390098457200234 1.0 19.06965054559396 2.5117678726635693 21.59581089105537 1.0036017746535157 1.1199972530803586 0.3273554834352309 0.08978479399130243 154.27580214934616 96162.20860621458 0.028714012022252856 0.027045455086048945 324.9135869462593 -2.5117678726635693 0.11639547842684284 SDSVLPASHGHLPQAGS(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 3 SDSVLPASHGHLPQAGSLER 20 0 Q8N4C8;Q8N4C8-4;Q8N4C8-2;Q8N4C8-3;Q8N4C8-5 Q8N4C8 MINK1 Misshapen-like kinase 1 1 SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER 205.77 5.354400000000001e-22 1744170000.0 646510.0 720490.0 720810.0 784440.0 824270.0 939040.0 871360.0 552190.0 859400.0 809830.0 True False 643029.2619940134 744471.0741045972 822293.7826071644 883750.0235695546 929235.8986689437 874126.3750623922 829208.9878815498 593397.2217640049 647612.3853700092 758145.9560696548 0.8481602478335122 0.981962731772718 1.084611447207424 1.1656726735720528 1.2256688718439461 1.1529790115797725 1.093732652984521 0.7826952277636187 0.854205420717841 1.0 19.53211609305403 1.7504795020711743 24.999999999999996 0.8631495348975688 1.0872791788908063 0.4018250064740222 0.11100128195430604 3.206195663281987 6736.394720195124 0.0551946284727844 0.030608353848578063 56.2962545934078 -1.7504795020711743 0.22412964399323743 SDTALEEAVAEVLDHRPIEPK ddPTM_BT-474_Trastuzumab_2h_R1 5 SDTALEEAVAEVLDHRPIEPK 21 1 A0A3B3ITN0;Q86TP1 A0A3B3ITN0 PRUNE Protein prune homolog 0 ;;;; 249.5 6.553199999999999e-31 188717700.0 307919.0 283646.0 262877.0 236637.0 256274.0 329320.0 316631.0 299663.0 436203.0 342136.0 False True 306261.19831701706 293086.9856423723 299887.79663215554 266595.2199370615 288908.9748449956 306554.8835358946 301314.3488821185 322025.3747178812 328706.61547073995 320300.5875626333 0.9561680815122734 0.9150373025308935 0.9362698923351611 0.832328226325623 0.9019932715187441 0.9570849865392432 0.9407236845083771 1.005384901627477 1.0262441851014803 1.0 18.289066919046192 1.9721224099016244 1.4028770660836292 1.0165682109577148 0.9089458890580892 0.6226825203964883 0.03309862503045717 0.2772114920733915 1.0141207066309488 0.0242290440562518 0.011200602855251868 93.78263046625256 -1.9721224099016244 -0.10762232189962562 SDTS(ph)SPEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SDT(0.036)S(0.482)S(0.482)PEVR 134.59 0.00025657 213280000.0 465910.0 490140.0 491660.0 469360.0 485060.0 492240.0 512370.0 498970.0 562720.0 498350.0 True False 463401.592327467 506454.01360411366 560881.4544146714 528780.9278754346 546829.5158241324 458212.6074083227 487584.70565652504 536205.6751183202 424045.1960616835 466544.87634109997 0.9932626330862653 1.08554190451303 1.202202580839405 1.1333977816291196 1.1720834233839807 0.9821404770359424 1.0450971179459325 1.1493121076016057 0.9089054827635829 1.0 18.831656333136337 2.7409507322595785 24.996697744492742 1.0387384174574452 1.1211448453060053 0.2718538803493954 0.0779514087449567 367.79102758140647 3846500.509157678 0.025271394712353897 0.025666318485878036 550.745214581339 -2.7409507322595785 0.08240642784856012 SDTSGHFER ddPTM_BT-474_Trastuzumab_2h_R1 3 SDTSGHFER 9 0 P20073-2;P20073 P20073-2 ANXA7 Annexin A7 0 ;; 121.83 0.00060287 1695700000.0 597190.0 905700.0 621350.0 788820.0 895550.0 785870.0 586690.0 1089700.0 1203430.0 816490.0 False True 593974.7953940463 935845.6769927888 708830.6791289827 888684.5311204629 1009592.984159282 731544.6566389953 558309.5633265537 1171018.9473844795 906860.8016358265 764380.909167742 0.7770664969128627 1.224318485415521 0.927326507801925 1.162619998042681 1.320798272236452 0.9570420295236064 0.7304075188565884 1.5319835089281402 1.1863990724509546 1.0 19.54393222110257 4.748596480235491 23.743644653055796 1.1298836182503542 0.7770660984421328 0.18098401090024085 0.21416602634119739 1196.9562959960542 2831735.0358523903 0.0523030324828688 0.6789370083423649 56052.692680553875 -4.748596480235491 -0.3528175198082214 SDVEAIFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SDVEAIFSK 9 0 B4DY08;G3V4W0;G3V5X6;G3V3K6;G3V251;B4DSU6;G3V4M8;G3V2H6;P07910;G3V2Q1;G3V576;G3V555;G3V575;P07910-2;G3V4C1;B2R5W2;P07910-4;A0A0G2JNQ3;O60812;B2RXH8;A0A0G2JPF8;P0DMR1;B7ZW38 B4DY08;P07910;P07910-2 HNRNPC;HNRNPCL1;HNRNPCL2;HNRNPCL4;HNRNPCL3 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 3 0 96.948 0.011958 0.0 122470.0 126790.0 117660.0 132890.0 134930.0 162140.0 142310.0 132160.0 183180.0 136170.0 False True 121810.63512769605 131010.12850382659 134225.50528094635 149713.86037448142 152112.53570723263 150931.6434365054 135425.9216230068 142022.45029488186 138037.7434862439 127479.51401899786 0.9555310597555542 1.02769554396248 1.0529182379918953 1.174415054266445 1.1932312174061457 1.1839678288545448 1.0623347811227515 1.1140805751245388 1.0828229504049771 1.0 16.959905898792936 4.237083538414986 2.0380062914336796 1.1217406730991943 0.9691172244312806 0.4263774227001347 0.058257717497760375 0.3194433272734405 2.497096896744577 0.0156742751034411 0.06242892905295713 17261.69896275633 -4.237083538414986 -0.15262344866791377 SDVEDHSVHLLFSANR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDVEDHSVHLLFSANR 16 0 P23919-2;P23919;H7C312;G5E9E9;H7C3A4;H7BZ20 P23919-2 DTYMK Thymidylate kinase 0 ;;; 218.2 7.8369e-15 915470000.0 601210.0 818320.0 749600.0 752800.0 687770.0 860430.0 851500.0 74284.4 886980.0 503150.0 False True 597973.1521607108 845557.2865151139 855137.1643599994 848104.402813676 775353.4327678302 800950.4993343552 810309.6919541166 79827.87913653997 668395.6639230739 471038.536231613 1.2694781979933019 1.7950915296224241 1.8154293090353912 1.8004989774268851 1.6460509557684753 1.7003927231561413 1.7202619947759041 0.16947207711533824 1.4189829759372787 1.0 18.84548556772708 1.7657044179598906 24.999999999757044 0.7879853389011208 1.6922726097096725 0.5687299347650132 0.3232429698169941 10.920703630323908 10064.417354153815 0.13856922285551504 0.07685106113647744 58.304814500364934 -1.7657044179598906 0.9042872708085518 SDVLELTDDNFESR ddPTM_BT-474_Trastuzumab_2h_R1 6 SDVLELTDDNFESR 14 0 H7BZJ3 H7BZJ3 PDIA3 0 ;;;;; 416.46 1.0118999999999993e-132 15070170000.0 5382019.0 6433150.0 6317770.0 6260719.0 6177500.0 6718540.0 6814250.0 6292240.0 7941210.0 6467600.0 False True 5353042.8077025255 6647273.508828704 7207257.10095874 7053325.383474018 6964168.008088849 6254103.143542 6484618.694537095 6761798.900147308 5984205.202262241 6054832.230809064 0.8840943239458242 1.0978460270137784 1.1903314288851379 1.1649084755122163 1.1501834803370392 1.0329110543672833 1.0709823901546156 1.1167607362828247 0.9883354276626448 1.0 22.529655555150796 2.7235985960298055 24.53502150441269 1.0569635704916693 1.1063987330779095 0.07714061768527525 0.08612956266662923 1964.6417574081624 3221653.940197206 0.028859881480410538 0.02732870821446722 529.1741197242093 -2.7235985960298055 0.049435162586240144 SDVLVEYQGEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDVLVEYQGEGR 12 0 H7C3P4;F6S8M0;P15586-2;P15586;H0YFA9 H7C3P4 GNS N-acetylglucosamine-6-sulfatase 0 ; 172.17 8.4849e-05 410040000.0 289640.0 344970.0 336370.0 333190.0 334790.0 333730.0 338290.0 310840.0 319590.0 301430.0 False True 288080.61042202916 356452.11791123153 383727.9722195474 375371.8198372597 377423.5220442037 310660.03061591793 321925.6203067037 334036.45921353746 240831.3267865962 282192.4793327934 1.0208656556090987 1.263152436783628 1.3598093511450806 1.3301978164860258 1.3374683936884904 1.1008799077510225 1.1408015588078537 1.1837185030703945 0.853429288250381 1.0 18.106320013846606 1.3480870629218782 4.189333375530653 0.9285260901516157 1.2275323067923365 0.526468744851301 0.10975446025924414 0.17222856905276776 4.698794129964576 0.08750557499767764 0.02936370081038108 22.28881927969266 -1.3480870629218782 0.2990062166407208 SDVQIHVPTFTFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDVQIHVPTFTFR 13 0 O75569;G5E9Q4;O75569-3;O75569-2;F8WEG8;C9JMM3 O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 0 ; 107.74 0.0012716 1334950000.0 1356350.0 1700340.0 1661390.0 1643020.0 1627370.0 1648090.0 1800890.0 1573540.0 2030330.0 1691000.0 False True 1349047.562304651 1756934.7890227665 1895299.270939248 1851026.1635373656 1834605.9233223097 1534161.417486558 1713774.0706321169 1690965.5450742159 1529982.376528146 1583078.9322620637 0.8521669607320179 1.1098213444810865 1.19722348160559 1.1692570255435284 1.1588846809431281 0.9690997626343195 1.082557562801561 1.0681498632907664 0.9664599441936556 1.0 20.594301759318594 2.7432981932677865 24.987845214934126 1.0307229116339318 1.1076867943108137 0.1365564128459953 0.09627176569415742 902.2156534156319 4758644.202607379 0.03071227570493878 0.031659612835669045 553.7301783732378 -2.7432981932677865 0.07696388267688192 SDYAQLLEDMQNAFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SDYAQLLEDMQNAFR 15 0 P38606;P38606-2 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 ;;; 350.25 5.692799999999998e-82 593892000.0 533192.0 536903.0 504288.0 513493.0 551477.0 561536.0 601825.0 532591.0 576899.0 550064.0 False True 530321.3535152003 554773.4917902835 575287.3670501277 578501.1611503763 621704.3270897309 522718.33803356136 572712.4255552385 572335.6448622996 434729.9715005501 514958.44458651694 1.0298332983761804 1.0773170099885163 1.1171529918536467 1.1233938723247479 1.2072902845372795 1.0150689701831672 1.1121527019817974 1.1114210299470928 0.8442039859150463 1.0 18.97409649079511 1.2524535870108184 24.999594946692408 0.9221020037711696 1.1017648435212988 0.5722965610741549 0.06120916394147945 131.6895017926543 236970.0602775931 0.039543893108817625 0.014278771704484718 17.883543977160926 -1.2524535870108184 0.1796628397501292 SDYDGIGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDYDGIGSR 9 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ; 163.2 0.00014702 1110700000.0 1133060.0 1584560.0 1423230.0 1524430.0 1463290.0 1408310.0 1402190.0 1324020.0 1451600.0 1355490.0 False True 1126959.7308548014 1637301.121713252 1623608.4130630775 1717422.6816966718 1649631.3079006595 1310956.84450515 1334360.7128140265 1422825.0956373322 1093872.6304434533 1268981.4677066256 0.8880821032725609 1.2902482529333343 1.279457938812419 1.353386732117132 1.299964853609695 1.0330780061543252 1.0515210401185433 1.1212339437933174 0.86200835731696 1.0 20.275239569438593 2.7265633578992357 23.55198675795142 1.0324383271630935 1.2364729169881672 0.3679610950514334 0.13496798639997185 394.4331870123721 774314.9791595415 0.04365754003034995 0.041499803239237014 532.7989470691008 -2.7265633578992357 0.20403458982507372 SDYDMVDYLNELR ddPTM_BT-474_Trastuzumab_2h_R1 8 SDYDMVDYLNELR 13 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ;;;;;;; 327.32 5.812299999999997e-62 1606051000.0 1605344.0 1761738.0 1554764.0 1611988.0 1613847.0 1729941.0 1660788.0 1557626.0 1870777.0 1707653.0 False True 1596701.006274487 1820376.384336892 1773661.256949053 1816065.5155191475 1819360.84942941 1610354.2505130877 1580449.3396137308 1673863.961584565 1409749.0754774832 1598669.1235447135 0.9987689026820867 1.1386823937029504 1.1094611329055577 1.1359858577192028 1.1380471559964571 1.0073092842016396 0.9886031551728577 1.0470358981307668 0.8818266736469272 1.0 20.608439944529707 2.6572938595217113 5.447499637972223 0.9916185024503785 1.1079868895928802 0.5420744319718972 0.05466612211028 0.1808215512784957 9.147595426462567 0.017525549319491768 0.016530677756786762 454.24887408054974 -2.6572938595217113 0.11636838714250164 SDYLNTFEFMDK ddPTM_BT-474_Trastuzumab_2h_R1 5 SDYLNTFEFMDK 12 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;;; 251.24 2.4372e-17 1083895000.0 785055.0 728278.0 693736.0 664382.0 665219.0 795958.0 811606.0 788648.0 1130011.0 816619.0 False True 780828.3511078111 752518.2929766529 791407.9987385924 748492.6930793797 749930.6965880793 740935.2969435919 772345.5171439967 847500.918433399 851534.9304216289 764501.6762773006 1.021355969956812 0.9843252360688074 1.035194589228778 0.9790595839163156 0.9809405523344646 0.9691741953419071 1.010260070200096 1.108566461960239 1.1138431174776908 1.0 19.544160139337865 1.8437652201061472 5.456708665442361 1.083702100449795 0.9947711515339857 0.5030575030292721 0.03484657661503697 0.15302354213359579 6.252916573543622 0.015173557546869222 0.008907524748220867 69.78550411726441 -1.8437652201061472 -0.08893094891580944 SDYMFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SDYMFQR 7 0 A0A2R8Y430;P48637;A0A2R8YF34 A0A2R8Y430 GSS Glutathione synthetase 0 ; 115.46 0.013204 423000000.0 342480.0 497970.0 613530.0 435550.0 325830.0 405100.0 485890.0 390190.0 813450.0 481780.0 False True 340636.12573310523 514544.6304207787 699909.6911016413 490690.58534205204 367322.5191542842 377096.390502827 462385.6444199475 419307.9591446735 612986.1471715538 451032.3879273902 0.7552365081771972 1.1408152589334961 1.551794748749433 1.0879276044829096 0.8144038631953364 0.8360738620915493 1.0251717100510862 0.9296626370259159 1.3590734580910757 1.0 18.782871509302243 3.473607985120527 24.985614676143147 0.9788948214252542 1.1770064263693407 0.08190943745497825 0.2273032414178386 209.5460160235537 1490235.0255118941 0.06376951847567833 0.0867642177771127 2975.8290917118234 -3.473607985120527 0.19811160494408653 SEAAAPHTDAGGGLS(ph)S(ph)DEEEGTSSQAEAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR 30 0 Q01831-2;Q01831 Q01831-2 XPC DNA repair protein complementing XP-C cells 2 SEAAAPHTDAGGGLS(1)S(1)DEEEGTSSQAEAAR;SEAAAPHTDAGGGLS(1)S(1)DEEEGTSSQAEAAR 141.16 2.7881e-08 3735100000.0 945070.0 1540540.0 1555940.0 1525200.0 1403530.0 1538530.0 1468130.0 1263360.0 1567060.0 1429450.0 True False 939981.8481271492 1591815.9426239037 1775002.8275270767 1718290.163617721 1582261.2261259328 1432175.0424100568 1397110.9430987625 1357638.3384120932 1180879.060528189 1338221.277186285 0.7024113755712618 1.189501295309563 1.3263896321086444 1.2840104943111954 1.1823614323729488 1.0702079445495867 1.0440059255643415 1.0145096043209192 0.8824243648338036 1.0 20.351885257130746 2.0719322358629375 1.444239695363658 0.957818231475961 1.154404307117013 0.16474337924953697 0.16282237753219564 0.7174075051619959 2.8176275352039277 0.10965438571219144 0.055403330690282124 118.01364814131294 -2.0719322358629375 0.1965860756410519 SEAALDQEQITAAYSVEHNQLEAHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEAALDQEQITAAYSVEHNQLEAHPK 26 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 236.82 3.4249999999999996e-45 612140000.0 88464.0 79414.0 101650.0 81141.0 70701.0 107920.0 105400.0 75816.0 115380.0 97336.0 False True 87987.71965327441 82057.2469832232 115961.43644236127 91413.44228042578 79704.35327234163 100459.74441635411 100301.39933289943 81473.77490584736 86946.1450127898 91123.93314645793 0.9655829880812665 0.9005015932679026 1.2725683850364924 1.0031770921641687 0.874680783853323 1.1024518032479051 1.1007141139495276 0.8940985325435804 0.9541526798788039 1.0 16.475542398417563 1.7258688532129838 16.08865752298114 0.9433992809441211 1.0312447974572534 0.10400861166187725 0.10981348730331543 0.3166917629544728 354.6281586805882 0.051898754069417664 0.028674260950885037 53.19475992632639 -1.7258688532129838 0.08784551651313233 SEADSDKNATILELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEADSDKNATILELR 15 1 P15924 P15924 DSP Desmoplakin 0 ; 149.97 2.9768e-06 1324370000.0 1079830.0 1112820.0 1007560.0 1021740.0 920390.0 1373350.0 1392290.0 1039290.0 1642210.0 1377300.0 False True 1074016.3152603905 1149859.5409861046 1149415.690131484 1151092.1792386377 1037596.2109210691 1278413.547018162 1324939.6136356962 1116847.0972076862 1237509.3499865977 1289399.5348341463 0.8329585099459027 0.8917790878015243 0.891434857140174 0.8927350663165092 0.8047127231626726 0.991479764402585 1.0275632787521685 0.8661761285274115 0.9597563180025319 1.0 20.29826793745477 2.7268017952135093 24.85709626885043 0.9578728734520686 0.8676005396266694 0.5433161258544494 0.04807503042139835 663.9841849569594 1403600.9896576253 0.01630387642756938 0.015481486705327056 533.091545836348 -2.7268017952135093 -0.09027233382539923 SEAEDLAEPLSSTEGVAPLSQAPS(ph)PLAIPAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEAEDLAEPLSSTEGVAPLSQAPSPLAIPAIK 32 0 Q6P4R8-3;Q6P4R8;E9PQ59;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 SEAEDLAEPLSSTEGVAPLS(0.03)QAPS(0.97)PLAIPAIK 75.82 0.001335 147560000.0 56604.0 63901.0 49723.0 58594.0 54758.0 75523.0 67129.0 69660.0 92760.0 80516.0 True False 56299.250353295625 66027.9061560299 56723.5661999363 66011.99439222192 61731.10672390603 70302.27277201925 63881.71381231698 74858.3829263127 69900.54092031882 75377.39994678428 0.7468982797634617 0.8759642306930853 0.7525274981623483 0.8757531360703044 0.8189604147594318 0.9326704399681068 0.8474916069991384 0.9931144212875742 0.9273408338529576 1.0 16.201844411370846 2.3985110309321875 0.4550450562540221 1.0020529251400399 0.7797086272862467 0.6473020404595974 0.050008658819073896 0.6289729049405908 0.2787106018238109 0.04516393008662828 0.05025792238737306 250.32892302710624 -2.3985110309321875 -0.22234429785379317 SEAEEAITSFNGHKPPGSSEPITVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SEAEEAITSFNGHKPPGSSEPITVK 25 1 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 0 ;;; 254.48 4.6439e-45 1305470000.0 764123.0 804201.0 774317.0 757934.0 724661.0 1019870.0 981640.0 965760.0 1234640.0 989660.0 False True 760009.0466700457 830968.3441352292 883334.1031159839 853888.3666872767 816942.282947742 949368.7874157439 934154.3229710384 1037829.915229913 930379.5153284003 926499.0515094455 0.8203020234417342 0.8968906582056632 0.9534106933804869 0.9216289701496488 0.8817518826563131 1.0246840359620868 1.0082625788435735 1.1201629548773828 1.0041883084636005 1.0 19.82142997375107 2.6523369826376246 3.7018673663149615 1.0472397476219568 0.8993008093981113 0.6826879984820584 0.046024793309100434 0.13811313011969967 3.5774544339057885 0.016008050647504445 0.015149618108999296 449.09372060397726 -2.6523369826376246 -0.14793893822384552 SEAHLTELLEEICDR ddPTM_BT-474_Trastuzumab_2h_R1 8 SEAHLTELLEEICDR 15 0 Q9Y2B0;F8VXJ7;F8W031;F8W1K5 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ;;;;;;; 287.48 1.8731e-34 3458399000.0 1116251.0 1888019.0 1718675.0 1864848.0 1767155.0 1810735.0 1687788.0 1645155.0 1972062.0 1717316.0 False True 1110241.2286431447 1950860.5710834116 1960649.5010090997 2100937.565592825 1992191.7145016987 1685563.1514617035 1606143.246463718 1767924.8200278212 1486073.7443769495 1607715.4226118028 0.6905707397143147 1.2134364973088052 1.2195252178547495 1.3067844819077257 1.2391444944064154 1.0484213361114827 0.9990221054510189 1.09965034555416 0.9243387999368438 1.0 20.616580630865595 2.5612606851471496 7.317205981150112 1.0227765314938713 1.1524284217447314 0.11295761828883888 0.16418862229751183 0.6049693272008124 46.0953977874745 0.05387660344122187 0.05062234552776473 364.13354160313145 -2.5612606851471496 0.1296518902508601 SEAHTADGISIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEAHTADGISIR 12 0 P49916-3;P49916;P49916-4;P49916-2 P49916-3 LIG3 DNA ligase 3 0 ; 174.9 2.9125e-05 609700000.0 302630.0 328760.0 264670.0 292630.0 293910.0 351130.0 340250.0 310110.0 416900.0 346000.0 False True 301000.67370535387 339702.5778603829 301933.23544712004 329676.9279959701 331337.69635894714 326857.2095711124 323790.8076187766 333251.98290667264 314160.5811737913 323917.9837744965 0.9292496520196388 1.0487302183779807 0.9321286577818363 1.0177790197208776 1.02290614586443 1.009073981513364 0.9996073816148214 1.0288159336613871 0.9698769346270751 1.0 18.305269042545333 SEALKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEALKDR 7 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 83.005 0.020932 369880000.0 597020.0 597410.0 561600.0 513350.0 506140.0 574200.0 655770.0 544080.0 874780.0 713260.0 False True 593805.710655158 617294.4307080292 640668.3984852924 578340.0573650391 570593.9288731832 534506.9055214097 624047.8998153275 584682.0123822592 659202.1904514506 667739.136147392 0.8892779807413977 0.9244544722503311 0.9594591118048169 0.8661167603592138 0.8545162294444792 0.8004726345760067 0.9345684055840328 0.8756144139695905 0.9872151485006609 1.0 19.348925073408346 1.218502880421126 8.802494124918685 0.9943469776957437 0.8885385182551324 0.4961020047673854 0.042547800470085766 0.20650507726393533 74.91982646668873 0.039708333999099274 0.01076322067329514 16.53875753924891 -1.218502880421126 -0.10580845944061124 SEALS(ph)SVLDQEEAMEIK ddPTM_BT-474_Trastuzumab_2h_R1 3 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SEALS(0.987)S(0.013)VLDQEEAMEIK;SEALS(0.984)S(0.016)VLDQEEAMEIK;SEALS(0.989)S(0.011)VLDQEEAMEIK 272.48 1.2937e-35 143066000.0 233924.0 206297.0 200392.0 179001.0 182874.0 231677.0 250508.0 221746.0 314486.0 241666.0 True False 232664.57917539947 213163.47093582986 228605.4517615116 201662.50824661407 206161.91992088093 215661.71429899658 238389.97100650799 238293.81252337218 236985.13919650044 226242.6689793278 1.0283850532043468 0.9421895166702926 1.0104435772122176 0.8913548852495209 0.9112424320795045 0.953231834082995 1.0536914724440867 1.053266448802129 1.0474820698749545 1.0 17.78751151923587 2.2421605075511226 24.89192386921816 1.0445237101282536 0.952989637780296 0.4897893585116633 0.04098218456144804 68.17022261757981 471374.8331820094 0.014717091395663575 0.011861512338464691 174.6467497124168 -2.2421605075511226 -0.09153407234795763 SEALSS(ph)VLDQEEAMEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.005)EALS(0.102)S(0.893)VLDQEEAMEIK;SEALS(0.024)S(0.976)VLDQEEAMEIK 153.72 1.039e-08 21414000.0 152930.0 105390.0 95200.0 96370.0 105285.0 129645.0 129755.0 134382.0 179707.0 133092.0 True False 152106.64187212038 108897.84244039965 108603.33250676616 108570.43211896134 118692.4206769138 120682.94630150327 123478.25493776432 144410.26721796943 135420.61780042818 124597.954614206 1.2207796054364604 0.8739938209867186 0.8716301390583484 0.8713660866675472 0.9526032834521435 0.9685788717413154 0.9910134987375304 1.1590099345138412 1.0868606809777297 1.0 16.926920859876077 1.9318881270216541 5.171186697257102 1.0962273146618349 0.9496548640793144 0.21373117854449153 0.10256395165483849 0.276825810853138 13.940258412243596 0.04546560151796973 0.027389595362244796 85.48464785870395 -1.9318881270216541 -0.14657245058252044 SEANDAVNS(ph)STK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEANDAVNSSTK 12 0 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 SEANDAVNS(0.923)S(0.071)T(0.006)K;SEANDAVNS(0.881)S(0.11)T(0.009)K 288.22 4.9188e-29 692080000.0 1868710.0 1410570.0 1235020.0 1083060.0 1223460.0 1667600.0 1477330.0 1518830.0 2092500.0 1546490.0 True False 1858649.0729932 1457519.969742428 1408900.081013724 1220175.2849513555 1379260.378984443 1552322.7371081554 1405865.9039513492 1632172.8070624673 1576831.4130634665 1447791.684183298 1.2837821167909715 1.0067193959361755 0.9731372934418305 0.8427837362801671 0.9526649407179641 1.072200340744341 0.9710415657929413 1.1273533512407063 1.0891286573129892 1.0 20.465422604192796 -0.025867077006310184 8.157776851397774 1.0000000000000078 1.0299690451680745 0.006715018447472132 0.11289164136185523 0.0 5.812031863171944e-18 0.11105139368746696 0.026175064533246608 0.9421779214996598 0.025867077006310184 0.029969045168066755 SEAPAEVTHFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEAPAEVTHFSPK 13 0 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 SEAPAEVTHFS(1)PK;SEAPAEVTHFS(1)PK 155.1 2.9606e-05 1158950000.0 2016760.0 1615340.0 1496300.0 1493810.0 1397660.0 2007520.0 2010700.0 1727160.0 2655900.0 1902650.0 True False 2005901.988243101 1669105.615406349 1706966.033927249 1682926.1928362094 1575643.716420147 1868744.8675937662 1913434.7593800852 1856049.4495407734 2001389.032236683 1781221.2480593834 1.1261385919511706 0.9370568744476955 0.9583121893402998 0.9448159203522498 0.8845861894679226 1.0491368602467204 1.0742263272823331 1.04200949296047 1.123604961717793 1.0 20.76443529612503 2.545563260994845 12.038973648135297 1.0615660129989903 0.9662867424696379 0.3147887243974833 0.06464407820980388 1.2895563066013163 225.17550356250757 0.020396294151569926 0.01922228926040207 351.20707895655516 -2.545563260994845 -0.09527927052935248 SEASLHPVLMSEAPWNTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEASLHPVLMSEAPWNTR 18 0 O96019-2;O96019;H7C5S0 O96019-2 ACTL6A Actin-like protein 6A 0 122.49 3.5995e-05 918600000.0 677230.0 933200.0 967220.0 934600.0 940360.0 1034900.0 1039500.0 924800.0 1132900.0 1059300.0 False True 673583.8689273257 964260.9978686873 1103396.168773049 1052920.2641733019 1060109.2720496054 963359.798892559 989215.4137243736 993813.2720392481 853711.9750822473 991694.5670876432 0.6792251276574718 0.972336674890212 1.1126371015759875 1.0617384617377335 1.0689876774891274 0.9714279283809165 0.9975000837500297 1.0021364490861606 0.860861805050908 1.0 19.919536326502005 4.726072218346413 4.223122901821051 1.012560365888568 0.6565948996506226 0.7021180804647833 0.06403286942732825 0.1097133397946793 4.4588742760581255 0.015803336386585022 0.11555386726208045 53219.67503148008 -4.726072218346413 -0.35596546623794545 SECDS(ph)SPEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SECDS(0.701)S(0.299)PEPK 103.22 0.0041404 0.0 408150.0 310680.0 260390.0 262100.0 254610.0 336660.0 331460.0 316750.0 480560.0 340760.0 True False 405952.56574972766 321020.79598997434 297050.64864954696 295281.83312628156 287033.0743082963 313387.48661239655 315426.01349983714 340387.4934239099 362132.4271740877 319012.40506068675 1.2725290907496278 1.0062956515089296 0.9311570457363189 0.9256123851049277 0.8997552125087208 0.9823677124805847 0.9887578304042209 1.0670039409883039 1.1351672268205308 1.0 18.28325299990522 -0.13170316075975386 7.56266620707858 1.000000764814638 1.014493691495908 0.0 0.10661759627460352 0.0 0.0 0.1046087109250354 0.024656509622091944 0.7384087583087734 0.13170316075975386 0.014492926681269891 SECDSS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SECDS(0.048)S(0.952)PEPK;SECDS(0.049)S(0.951)PEPK;SECDS(0.058)S(0.942)PEPK;SECDS(0.43)S(0.57)PEPK 212.2 4.7112e-08 1703380000.0 5693720.0 4480770.0 3721350.0 3427170.0 3450570.0 4661630.0 4872830.0 4682850.0 7060500.0 4878360.0 True False 5663065.644151768 4629909.720767339 4245283.733445949 3861049.3706043386 3889979.636369265 4339382.49039668 4637112.5968817165 5032308.046030478 5320534.38085285 4567018.888225874 1.2399917282478483 1.013770653041003 0.9295524799318472 0.8454200573942054 0.8517546635066328 0.9501564579870563 1.0153478035390984 1.1018802788410083 1.1649906670124788 1.0 22.12282132573487 1.915888202146527 3.083679464153603 1.0991531101671475 0.9611950549738308 0.1781158336973876 0.11016614113328674 0.4123198601340568 6.997358300903116 0.060192327765063204 0.03270201783602318 82.3925989328805 -1.915888202146527 -0.1379580551933166 SECEAEVGWNLTYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SECEAEVGWNLTYSR 15 0 Q9Y365;F5H0V7;F5H8G1;F5H1Z6;F5H3G8;F5H5A8 Q9Y365 STARD10 PCTP-like protein 0 134.68 7.8245e-05 91161000.0 191300.0 178740.0 169130.0 177130.0 164820.0 198730.0 199490.0 184260.0 247410.0 221960.0 False True 190270.06205542808 184689.2528493884 192942.03389568639 199554.63983845213 185808.85003532257 184992.26286010057 189839.90657419447 198010.41685332134 186439.12062414893 207794.32277048336 0.9156653536949059 0.8888079827541036 0.928524087295677 0.9603469294917539 0.8941959893704865 0.8902662035883987 0.9135952515116584 0.9529154320160675 0.89722913570684 1.0 17.664796712785016 -4.999999999755058 0.30769699030966147 1.7217576504933547 0.9136177091951634 0.5155809996142504 0.024223034989799837 246.18017595558644 2.241448145528647 114.99278472252084 0.023993310888692353 1.0000000005639995e-05 4.999999999755058 -0.8081399412981913 SEDDSAKFDS(ph)NEEDSASVFSPSFGLK ddPTM_BT-474_Trastuzumab_2h_R1 10 SEDDSAKFDSNEEDSASVFSPSFGLK 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 SEDDS(0.004)AKFDS(0.996)NEEDSASVFSPSFGLK;SEDDS(0.007)AKFDS(0.993)NEEDSASVFSPSFGLK;SEDDS(0.001)AKFDS(0.999)NEEDSASVFSPSFGLK;SEDDS(0.001)AKFDS(0.999)NEEDSASVFSPSFGLK;SEDDS(0.002)AKFDS(0.998)NEEDSASVFSPSFGLK;S(0.092)EDDS(0.084)AKFDS(0.657)NEEDS(0.084)AS(0.084)VFSPSFGLK;SEDDSAKFDS(1)NEEDSASVFSPSFGLK;SEDDS(0.001)AKFDS(0.998)NEEDSASVFSPSFGLK;SEDDS(0.001)AKFDS(0.999)NEEDSASVFSPSFGLK;SEDDS(0.001)AKFDS(0.999)NEEDSASVFSPSFGLK 323.51 1.0910999999999997e-82 13138603000.0 4199985.0 4485574.0 4151843.0 3688319.0 3788393.0 6055254.0 5814745.0 5907352.0 9192800.0 5152517.0 True False 4177372.747422202 4634873.61900326 4736386.4059337145 4155259.807228135 4270822.392985467 5636668.543514705 5533463.5698669795 6348188.603165646 6927357.617209003 4823678.9537682645 0.866013842848897 0.9608586440817107 0.9819033255174752 0.8614295949323162 0.8853869492390439 1.1685413970412215 1.1471459072839478 1.316047080249077 1.4361149826933117 1.0 22.201702459311015 2.5269338704164745 2.047809513868608 1.262104360905598 0.9133969090135892 0.632863966786269 0.11390958078024582 0.1920813936515591 1.618693197236293 0.044154446554739754 0.03751536713855765 336.4603329985659 -2.5269338704164745 -0.3487074518920088 SEDES(ph)ET(ph)EDEEEKSQEDQEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDESETEDEEEKSQEDQEQK 21 1 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 2 SEDES(1)ET(1)EDEEEKSQEDQEQK 325.32 2.614599999999999e-67 746090000.0 2155700.0 1143600.0 1083800.0 900790.0 955350.0 1958100.0 1721800.0 1683600.0 3430400.0 1675400.0 True False 2144093.950720784 1181664.0346792014 1236389.6194415244 1014829.9216399199 1077008.1596969143 1822741.1558715994 1638509.956085257 1809238.7811475717 2585023.885004977 1568474.5376178967 1.3669931511780247 0.7533842637151386 0.7882752252512033 0.6470171477448282 0.6866596389461371 1.1621107720625592 1.0446519320445748 1.1535021689898346 1.648113388522681 1.0 20.58093067819931 2.1801530368844055 1.4076861387888893 1.2802706097517829 0.8411366532775849 0.3160561468708334 0.25202912351467455 0.4845151558785783 1.8510248931648046 0.15479663050627654 0.08582794037873441 151.40946918100707 -2.1801530368844055 -0.43913395647419795 SEDES(ph)ETEDEEEKSQEDQEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEDESETEDEEEKSQEDQEQK 21 1 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 1 S(0.004)EDES(0.977)ET(0.019)EDEEEKSQEDQEQK;SEDES(0.98)ET(0.019)EDEEEKSQEDQEQK 162.72 3.0932e-13 662150000.0 1316090.0 624030.0 575730.0 466890.0 535440.0 844470.0 893960.0 829930.0 1272770.0 770180.0 True False 1309004.317671345 644800.4613158992 656787.779665131 525998.2261286897 603625.1101984773 786093.7765685562 850715.7395411659 891863.5908991491 959112.8877442235 721026.4530157287 1.8154733605076068 0.8942812827726214 0.9109066344488246 0.7295130767098436 0.8371747079095163 1.090242630184621 1.1798675845844564 1.2369360197103527 1.3302048541113665 1.0 19.459692664463972 2.3437225986439207 3.4902956699913545 1.2105928527657333 1.002624806368086 0.045652672193795873 0.2905334594521921 0.6006345336483292 14.314075360206047 0.10897587471840467 0.08765211432874645 220.65948418989086 -2.3437225986439207 -0.2079680463976472 SEDES(ph)ETEDEEEKSQEDQEQKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEDESETEDEEEKSQEDQEQKR 22 2 P25205;P25205-2;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 MCM3 DNA replication licensing factor MCM3 1 SEDES(0.972)ET(0.028)EDEEEKSQEDQEQKR;SEDES(1)ETEDEEEKSQEDQEQKR;S(0.003)EDES(0.968)ET(0.029)EDEEEKSQEDQEQKR 270.71 1.3729999999999999e-45 2718850000.0 2050430.0 1089070.0 894480.0 931280.0 927870.0 1549930.0 1661490.0 1517670.0 2496500.0 1641020.0 True False 2039390.7127041917 1125319.036593283 1020415.0090404637 1049179.9525137097 1046028.7445836342 1442786.9872427708 1581117.3811918315 1630926.2419721063 1881271.0263861143 1536288.6986520947 1.3274788224983411 0.7324919057079654 0.6642078470900378 0.6829315046281579 0.6808803224949819 0.9391379292893581 1.0291798556996927 1.0616014056492407 1.2245556632921268 1.0 20.551017921435722 2.355460811612002 2.5372948649928118 1.0876224834490933 0.7974886343225339 0.29117053317714003 0.19003342955669517 0.344789822359278 4.5450709471718245 0.07749579705953817 0.06002556076169825 226.7048501705172 -2.355460811612002 -0.2901338491265594 SEDHLTESHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDHLTESHQR 11 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 0 136.96 5.1119e-05 40642000.0 50261.0 80619.0 74151.0 78431.0 77083.0 66161.0 73114.0 41231.0 57918.0 56688.0 False True 49990.40036052206 83302.35467978533 84590.81626795397 88360.35655828832 86899.06314326396 61587.44579624183 69577.19649739671 44307.86658677573 43644.884961438394 53070.12330696146 0.941968799872085 1.5696657457899323 1.5939442193995768 1.6649736434039464 1.6374385007668713 1.160491854145798 1.3110426764030136 0.8348928516803287 0.8224002930800292 1.0 15.695612280364836 2.0528562888726594 1.5271937901762416 0.8631872379302815 1.4877223414346983 0.5477372112821108 0.2196669535163699 0.28287090800074133 1.2403393044371824 0.1414654878440219 0.07121474850229106 112.94221190328594 -2.0528562888726594 0.6245351035044168 SEDLLDYGPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEDLLDYGPFR 11 0 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ;;; 233.46 4.1662e-15 276725000.0 467473.0 713880.0 795550.0 572680.0 728580.0 856750.0 684880.0 523750.0 849650.0 698530.0 False True 464956.1773091324 737641.0642504279 907556.5249554388 645181.2292817963 821360.3443680091 797524.8890725683 651749.7379043285 562834.884548611 640265.1422267021 653949.2173583785 0.7109973755872335 1.1279791223393796 1.3878088708806848 0.986592249300335 1.2560001947641841 1.2195517142663803 0.9966366204046627 0.8606706294751404 0.979074712885271 1.0 19.31881908155188 2.0482466847104313 6.503074738337333 0.930286926494127 1.1277192894449233 0.16331335798068725 0.17270322026490723 0.29902282479798276 29.586023994997 0.06576476776606663 0.0479285058155153 111.74978203128283 -2.0482466847104313 0.19743236295079625 SEDMPFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SEDMPFSPK 9 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK 216.04 6.4762e-07 4364320000.0 8501900.0 7173500.0 6094200.0 5824100.0 5948300.0 7825600.0 7744500.0 7622100.0 11532900.0 7277100.0 True False 8456126.715049883 7412265.611027671 6952210.388264026 6561430.462841566 6705780.74666368 7284634.691480921 7369868.948136993 8190899.806239568 8690771.327942483 6812669.247761238 1.2412354699046506 1.088011958523228 1.0204825943294755 0.9631218284958962 0.9843103345824864 1.0692776100754897 1.08178874977071 1.2023040468214774 1.2756778601571508 1.0 22.699788735550317 1.8682371726572924 4.13660895870197 1.178970432279036 1.053977567537086 0.16128674536311138 0.09631015785085853 0.3331286725968707 8.911095237664618 0.047145121237809735 0.02644417031224189 73.83073172293295 -1.8682371726572924 -0.12499286474195004 SEDPDQQYLILNTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDPDQQYLILNTAR 15 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 148.62 8.146e-06 95478000.0 60214.0 66899.0 61584.0 66371.0 63995.0 68879.0 88193.0 63876.0 80547.0 88837.0 False True 59889.8145144043 69125.69277370053 70254.49190227609 74773.56179482806 72144.38392191753 64117.55685372562 83926.76766002277 68642.75147575574 60697.27112450329 83167.3466028179 0.7201121228553792 0.8311638593428253 0.8447364833916164 0.8990735528923868 0.8674604501506739 0.7709462844826791 1.0091312406638586 0.8253569974231926 0.7298209405955334 1.0 16.34372958410589 SEDPPT(ph)TPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDPPTTPIR 10 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0;H7C151 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SEDPPT(0.5)T(0.5)PIR 144.17 0.00036526 1142900000.0 1706300.0 2098200.0 1799000.0 1891400.0 1965700.0 1863100.0 1794200.0 1513300.0 1836500.0 1731400.0 True False 1697113.4703877522 2168037.318611313 2052283.5628116848 2130851.0460703904 2216020.243383287 1734308.2822656545 1707407.6914904006 1626230.1303816945 1383919.182839214 1620900.5696738814 1.0470188623162768 1.337551086830399 1.266137850284423 1.3146093510838293 1.367153719878784 1.0699658663298455 1.0533697892609934 1.0032880244522866 0.8537964689084248 1.0 20.62836416416603 2.5083170171351767 2.9107360872840826 0.9830801371439587 1.2725043527726638 0.6724677183524499 0.09534036200498705 0.15672612018330465 2.680547716283067 0.03432853742380967 0.03000540700966434 322.3420897576806 -2.5083170171351767 0.28942421562870513 SEDPPTT(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDPPTTPIR 10 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0;H7C151 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SEDPPT(0.147)T(0.853)PIR 145.41 0.00034082 1185700000.0 1025300.0 1239900.0 1132600.0 1139400.0 1115200.0 1147500.0 1086600.0 983810.0 1132900.0 999470.0 True False 1019779.898721539 1281169.321964623 1292060.2352643227 1283647.9231746867 1257214.1096917344 1068176.0259244475 1034037.0067848997 1057226.8978859552 853711.9750822473 935682.968910683 1.0898775895309512 1.3692344143616864 1.3808739479019612 1.3718833898078777 1.3436325672950704 1.1416003725791999 1.1051147035290383 1.1298986227319847 0.9123944791643842 1.0 19.835660268500884 2.160080616076298 1.0462495762663784 0.9948734796531443 1.321866770415122 0.6520807763062245 0.09534449357974328 0.3330375237231308 0.6858106200910948 0.07120018557541025 0.037623752597344275 144.57081059503335 -2.160080616076298 0.3269932907619776 SEDRRS(ph)S(ph)EER ddPTM_BT-474_Trastuzumab_2h_R1 1 SEDRRSSEER 10 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 SEDRRS(1)S(1)EER 88.441 0.059972 450940000.0 62371.0 61866.0 49370.0 58089.0 56680.0 46042.0 47947.0 52042.0 62823.0 53067.0 True False 62035.20146606951 63925.17241121328 56320.86686826726 65443.061444000676 63897.8620313195 42859.22491120997 45627.620434672965 55925.6383039214 47341.113435071005 49680.21862705555 1.2486901865662385 1.2867329125721685 1.133667854625649 1.3172861000325948 1.2861831891480668 0.8627020189454057 0.9184263212928866 1.125712403235372 0.9529167693575592 1.0 15.600383901970059 2.751028396356229 24.998424794355053 0.9872885009310898 1.2530759906407722 0.7636855606991152 0.0783564531038574 410.15238837989585 822372.4172315832 0.0255219664965537 0.026899854859417004 563.6745104939027 -2.751028396356229 0.26578748970968247 SEDRRS(ph)S(ph)EEREAGEI ddPTM_BT-474_Trastuzumab_2h_R1 3 SEDRRSSEEREAGEI 15 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 S(0.031)EDRRS(0.971)S(0.998)EEREAGEI;SEDRRS(1)S(1)EEREAGEI;S(0.433)EDRRS(0.713)S(0.854)EEREAGEI 143.52 8.016900000000001e-06 29706000000.0 3736500.0 4251100.0 3636500.0 4325900.0 4320000.0 4913500.0 5168000.0 4431300.0 5924900.0 4836100.0 True False 3716383.099164176 4392595.293655786 4148487.5909753684 4873558.49645548 4870126.393353917 4573841.310134882 4918004.096322815 4761986.107685457 4464787.784592465 4527455.957606489 0.8208546110581936 0.9702127054987412 0.9162955155876397 1.0764452580190231 1.0756871936372376 1.010245345943225 1.0862621618792723 1.051801751861316 0.98615819268021 1.0 22.110269176252956 4.748663411214003 0.9416439423657451 1.0450378772493392 0.7140181694855009 0.6771292196515624 0.04473306691733541 1.1541208952607627 0.7968898038979131 0.013922067518431166 0.39372430144124637 56061.33186625115 -4.748663411214003 -0.33101970776383827 SEDSGIGLSASS(ph)PELSEHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEDSGIGLSASSPELSEHLR 20 0 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 1 SEDSGIGLSAS(0.043)S(0.957)PELSEHLR;SEDSGIGLSAS(0.034)S(0.966)PELSEHLR;SEDSGIGLSAS(0.002)S(0.998)PELSEHLR;SEDSGIGLSAS(0.014)S(0.986)PELSEHLR 283.64 4.18e-45 3132950000.0 1368540.0 1756590.0 1709160.0 1657600.0 1703600.0 1796950.0 1837150.0 1597660.0 1716730.0 1769280.0 True False 1361171.9326990887 1815057.0362689234 1949794.871714963 1867451.9900424425 1920543.3619716964 1672731.076065304 1748280.035905466 1716885.5019530961 1293664.894503438 1656363.0356431836 0.821783572446442 1.0958087069143736 1.177154301175187 1.1274412371302953 1.159494217537841 1.009881916023177 1.0554932694610575 1.0365393727145154 0.7810273875141713 1.0 20.659587481485755 1.394395464886215 6.283996679749167 0.8910486131311481 1.0705666909642648 0.29069605126014864 0.10635192885371873 0.24520331470871107 13.769277410871599 0.07111872003007198 0.02605139168722821 24.79679004651705 -1.394395464886215 0.17951807783311668 SEDSTKDDIDLDALAAEIEGAGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEDSTKDDIDLDALAAEIEGAGAAK 25 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 ; 217.93 1.3503999999999998e-33 178768000.0 340070.0 270810.0 228240.0 191542.0 206130.0 339510.0 309680.0 314310.0 496800.0 318470.0 False True 338239.1009053288 279823.7471418984 260374.20810235612 215791.19756075647 232379.4336717691 316040.4728205749 294699.595307517 337765.4082338403 374370.2967789389 298144.9719441153 1.134478635342302 0.9385492745936662 0.8733141008702338 0.7237794290262412 0.7794175838569118 1.0600228162821874 0.9884439552539422 1.1328898355433326 1.2556653038210934 1.0 18.185654481121897 2.197838096050355 1.6702579488217253 1.134611655391818 0.8892983694660881 0.3750050252631971 0.12458338468871981 0.38844369918269056 2.130458213170246 0.07207463967673187 0.042676978744457236 157.70232495842825 -2.197838096050355 -0.24531328592572987 SEDVWLEAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEDVWLEAAR 10 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 ; 200.07 6.2081e-07 250050000.0 255520.0 300660.0 319010.0 312800.0 266060.0 292740.0 312180.0 264230.0 337470.0 302400.0 False True 254144.30871094106 310667.286347192 363923.8351153728 352400.4479278938 299941.1639388294 272503.57283583714 297078.66075658984 283948.1843327532 254305.04036632145 283100.573102335 0.8977173939491573 1.0973742756603049 1.2854931063096855 1.2447888892139696 1.0594862477738851 0.9625680720092812 1.0493749888990938 1.0029940286631345 0.898285148558832 1.0 18.110955144242322 3.0034790653385026 24.566689457130174 0.9921634201286813 1.141453992498721 0.31354498185622504 0.10291589297403365 107.47857732882198 758920.9475170335 0.03153171847777422 0.03750746950571122 1008.043016649353 -3.0034790653385026 0.14929057237003973 SEEAHAEDSVMDHHFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEEAHAEDSVMDHHFR 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;; 181.26 8.112899999999999e-10 4530940000.0 2772300.0 3346880.0 3090910.0 3077530.0 3132100.0 3477050.0 3475410.0 1579750.0 3861100.0 3138270.0 False True 2757374.2448314843 3458278.8775683185 3526083.261328659 3467144.982453736 3530954.3695888426 3236689.7175952974 3307291.1409445144 1697638.966807959 2909583.641089296 2937982.9217918753 0.9385263012862451 1.1770929136167732 1.2001714629362452 1.180110665973213 1.2018294399871168 1.1016707052950603 1.1257012817921346 0.5778246545329029 0.9903337488819511 1.0 21.486394578997203 1.7736274239654766 24.999999999961393 0.8134151356234912 1.1398533439275673 0.4694507018089613 0.13202063859910784 25.653428722103765 18297.1958281184 0.057720721159198476 0.0320285234866504 59.378254111910245 -1.7736274239654766 0.3264382083040761 SEEDNEIES(ph)EEEVQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEDNEIESEEEVQPK 16 0 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;C9J7Y7 P52701 MSH6 DNA mismatch repair protein Msh6 1 SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK 440.31 6.768099999999994e-182 1862870000.0 1108900.0 918940.0 792490.0 615020.0 734780.0 1031640.0 987540.0 1063120.0 1250620.0 1068220.0 True False 1102929.8056103734 949526.3623890388 904065.7035534362 692881.4689405792 828349.8776177297 960325.1550193438 939768.91743085 1142455.412813976 942421.4584494301 1000045.2850508473 1.1028798616397606 0.9494833649865767 0.9040247647459975 0.6928500931888796 0.8283123674500522 0.9602816686151529 0.9397263618747699 1.142403679005284 0.9423787827783345 1.0 19.93163390036321 2.1190137068495267 2.6198203096791084 1.0417822282789215 0.892143196716778 0.1807563222901133 0.10939121521427483 0.40602563775556083 5.531787855920415 0.05394886574477782 0.034347828951182026 131.52663429046902 -2.1190137068495267 -0.14963903156214353 SEEEFIHINNK ddPTM_BT-474_Trastuzumab_2h_R1 4 SEEEFIHINNK 11 0 Q15046;Q15046-2;H3BVA8;J3KRL2 Q15046 KARS Lysine--tRNA ligase 0 ;;; 154.24 3.2096e-05 5747830000.0 6678700.0 6575700.0 5983300.0 5710600.0 5701400.0 7191200.0 6689800.0 6492600.0 9091200.0 7484300.0 False True 6642742.62127333 6794568.199405405 6825696.632224096 6433561.374478986 6427439.495154643 6694089.270263952 6366188.81648227 6977110.780754776 6850795.575838742 7006645.566368406 0.948063172077407 0.9697319687496448 0.9741746699714829 0.9182084798694258 0.9173347551653067 0.9553914504246211 0.9085929573831591 0.9957847467331021 0.9777568325594009 1.0 22.74029248816514 1.651932796945438 8.700655292535458 0.9900571529443039 0.9427829092331739 0.5255074330318867 0.021500593028736577 0.09931602791824781 13.482787055884451 0.011054299124267251 0.005799691532244667 44.867595610645964 -1.651932796945438 -0.04727424371112998 SEEELEDYMVEIDILASCDHPNIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEEELEDYMVEIDILASCDHPNIVK 25 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 195.71 8.9558e-25 70617000.0 63426.0 59971.0 55646.0 64037.0 58334.0 69028.0 70118.0 56999.0 88607.0 78496.0 False True 63084.52146329108 61967.09848176498 63480.47311629735 72144.07763413843 65762.48912729346 64256.25683443384 66726.12446322804 61252.554815057345 66770.99212296994 73486.31807619338 0.8584526087955948 0.8432467444826283 0.8638407091028619 0.9817348252410298 0.8948943265753013 0.8743975547640112 0.9080074524082685 0.8335232519276363 0.9086180104130305 1.0 16.165188048804126 -2.9492639193409946 1.3460315026501484 3.20954704433894 0.883445374168274 0.4217576067834765 0.040283383894437204 391594.49487210193 8577.905621372853 2640331.330636149 0.011801152144940211 0.001123921762803715 2.9492639193409946 -2.326101670170666 SEEEQSSSS(ph)VKKDETNVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEEQSSSSVKKDETNVK 18 2 B4DY08;G3V4W0;P07910;G3V2Q1;P07910-3;G3V5V7;P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4 B4DY08;P07910;P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 S(0.001)EEEQS(0.041)S(0.182)S(0.14)S(0.636)VKKDETNVK;SEEEQSSS(0.006)S(0.994)VKKDETNVK 142.79 5.7467e-08 565890000.0 678190.0 311340.0 235991.0 259510.0 284490.0 468430.0 387270.0 403150.0 725940.0 382400.0 True False 674538.7003939924 321702.7636909955 269216.48152945674 292363.9393918401 320718.1151956609 436048.5366656113 368536.2705849336 433235.10015421995 547041.8140976311 357994.9046108892 1.8842131318242086 0.8986238618135075 0.752012048389551 0.8166706721974589 0.8958734078750504 1.2180300083867392 1.0294455754489074 1.2101711353269415 1.5280715089848005 1.0 18.449579528001998 1.6123107696475965 4.217385454827586 1.2934027425402266 1.0413174396901688 0.05138487827949545 0.32557943914444065 0.41238025228537384 16.68875370515658 0.18800830832297433 0.08443832992688007 40.95536206414468 -1.6123107696475965 -0.2520853028500578 SEEHNDKEHSSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEEHNDKEHSSDK 13 1 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 0 90.412 0.0045177 39942000.0 57702.0 59757.0 70739.0 65939.0 60572.0 69646.0 97526.0 41301.0 115040.0 78387.0 False True 57391.33884329491 61745.9756211307 80698.43632558959 74286.87063912208 68285.48516162806 64831.535949049314 92808.29479450038 44383.09034222854 86689.93345702327 73384.27454951292 0.7820659016608871 0.8414060914299866 1.0996693340770405 1.0122995845520033 0.9305193187616148 0.8834527062784683 1.2646891362519628 0.6048038304484831 1.1813148523875225 1.0 16.16318332190879 4.4315068455546545 10.216244807833982 0.9721974837610557 0.7968013564800166 0.14974913731349881 0.1710910194193389 0.7321278686286129 159.48890421347915 0.04019529610413945 0.11053460873031737 27008.896806873767 -4.4315068455546545 -0.17539612728103915 SEEHNDKEHSSDKGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEHNDKEHSSDKGR 15 2 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 0 ; 99.481 0.00081266 56930000.0 19620.9 44424.0 40296.0 49715.0 40378.0 38784.4 48667.9 20207.1 49606.2 41939.7 False True 19515.263254486916 45902.6259851249 45969.32654088916 56008.91390260619 45519.898960843675 36103.325716657244 46313.647747567506 21715.056411574693 37381.41669902455 39263.07243961637 0.497038617762273 1.1691042787270318 1.1708030901449828 1.4265035928796366 1.1593565182869943 0.9195237018748704 1.1795726842007686 0.5530656431681653 0.9520756878238282 1.0 15.260885451486553 1.758288069895116 24.999999999999854 0.7934853326991103 1.092731082681868 0.14889595567512903 0.2541188324687646 13.166870907299932 16701.36852989295 0.11658012660151346 0.06465099551813891 57.317609574834215 -1.758288069895116 0.29924574998275766 SEEHS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEHSPPR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 SEEHS(1)PPR;SEEHS(1)PPR 133.81 0.00058203 115375000.0 182267.0 248270.0 214541.0 219530.0 243770.0 213822.0 240390.0 213890.0 220800.0 238440.0 True False 181285.69472376737 256533.51686761578 244746.50797619877 247322.47549108183 274812.66456201044 199040.9884228475 228761.41732102205 229851.55791141253 166386.79856841732 223222.55506124548 0.8121298256532727 1.1492275805069554 1.096423736880208 1.1079636438317089 1.2311151285165167 0.8916705947041808 1.024813183677863 1.029696832599861 0.7453852435421046 1.0 17.76812328310471 2.712907883727552 24.96587343609716 0.9547866371558249 1.0857886310822416 0.23029893894553743 0.1268977442333781 1216.368241755508 1183798.0893748992 0.040402938096974955 0.03810496803363361 516.306846106709 -2.712907883727552 0.13100199392641665 SEEITTGSAWFSFLESHNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEITTGSAWFSFLESHNK 19 0 Q15121-2;Q15121 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 ; 250.08 3.458e-25 516700000.0 1327500.0 1197080.0 1084550.0 1011720.0 1072870.0 1370470.0 1302920.0 1082720.0 1592990.0 1370110.0 False True 1320352.887499114 1236924.0841498591 1237245.2129224066 1139803.64826601 1209493.6351013002 1275732.634639372 1239892.7819622513 1163518.0643407598 1200418.9594723885 1282668.406789813 1.0293797527948907 0.9643365951809478 0.9645869551109559 0.8886191023591542 0.9429511389684492 0.9945927005656906 0.9666510653874932 0.9071074473976827 0.9358762975044551 1.0 20.290716824934464 4.798295559814708 1.8444765660534526 0.9447541855869727 1.064781123522212 0.3320520541661618 0.03315409185091538 1.1251568876481488 3.479364936420519 0.008775567899616877 0.24503997673253858 62848.59304247946 -4.798295559814708 0.12002693793523933 SEEITTGSAWFSFLESHNKLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEITTGSAWFSFLESHNKLDK 22 1 Q15121-2;Q15121 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 ; 163.62 8.943e-12 532100000.0 460560.0 391260.0 317410.0 351920.0 370780.0 419790.0 473050.0 441000.0 595510.0 437770.0 False True 458080.3961330269 404282.8525783349 362098.5690228222 396473.03591682937 417996.6352147608 390770.90537936764 450166.7642735115 473909.6593526256 448754.5399251733 409831.1438062468 1.1177295895052588 0.9864620068246084 0.8835311188405173 0.9674058253227025 1.0199240383067967 0.9534924597241196 1.098420095878155 1.1563534555994426 1.0949742270863827 1.0 18.64467009594456 2.2254588769556274 21.38845578685619 1.106381536586557 0.9837708496067055 0.33223091556578044 0.06670800142811183 38.727182479933 63219.12302079818 0.025059334151137903 0.018675956231527846 168.0578785330589 -2.2254588769556274 -0.12261068697985156 SEEITTGSAWFSFLESHNKLDKDNLSYIEHIFEISR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEEITTGSAWFSFLESHNKLDKDNLSYIEHIFEISR 36 2 Q15121-2;Q15121 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 71.903 0.0014239 513160000.0 130760.0 148570.0 140270.0 166870.0 166030.0 198140.0 254350.0 160800.0 317970.0 204840.0 False True 130056.00268880176 153515.06263753845 160018.7967513034 187995.72489043343 187172.93636309073 184443.04817139028 242046.1187886428 172799.71252585502 239610.55407970847 191766.93582765275 0.6781982625288823 0.8005293612007623 0.834444144714903 0.9803344047765948 0.9760438396497569 0.9618083919177565 1.262189009507758 0.9010923169839654 1.2494883596359612 1.0 17.54899446888278 4.215855172317211 0.6052931683864994 1.0816527762277413 0.5630931788836728 0.6142665378007801 0.10780224973085706 1.3832400406402514 0.5869185318712173 0.053475648686157645 0.4609037296512715 16438.234527402616 -4.215855172317211 -0.5185595973440684 SEEKIS(ph)DSEGFK ddPTM_BT-474_Trastuzumab_2h_R1 4 SEEKISDSEGFK 12 1 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 1 SEEKIS(1)DSEGFK;SEEKIS(1)DSEGFK;SEEKIS(1)DSEGFK;SEEKIS(0.989)DS(0.011)EGFK 183.31 9.5436e-06 823010000.0 2685200.0 1524090.0 1342120.0 1253520.0 1333510.0 2193790.0 2039560.0 2092900.0 4066260.0 2120830.0 True False 2670743.1815537666 1574818.4143181408 1531078.8300838356 1412215.5034736993 1503324.594166987 2042138.460926184 1940898.6909241797 2249082.825530863 3064184.7080924483 1985476.813666084 1.3451394461879271 0.793168876855488 0.7711391135597171 0.7112727248957965 0.7571604885131713 1.028538055377981 0.9775479006175887 1.1327671066468128 1.5432991647152927 1.0 20.921054082538973 1.7686874989073618 1.8909101365188041 1.276786887648626 0.8759842685422924 0.3194268872730608 0.2135969815248798 0.3455428479141196 2.444108815096355 0.14663453810320012 0.06152972510145065 58.70667705361289 -1.7686874989073618 -0.4008026191063335 SEENTKEEKPDSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SEENTKEEKPDSK 13 2 P50502;Q3KNR6;Q8NFI4;F6VDH7;Q8IZP2 P50502 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 0 ;; 130.98 7.6352e-05 3708730000.0 2310910.0 1410290.0 1333430.0 1255830.0 1220060.0 2120550.0 2125680.0 1995780.0 3957660.0 2130310.0 False True 2298468.317326237 1457230.6501116913 1521165.3536186668 1414817.9492368505 1375427.409137819 1973961.3697377665 2022852.73751383 2144715.237965492 2982347.722927007 1994351.791949851 1.1524889072248659 0.7306788381035707 0.7627367246635278 0.7094124291149266 0.6896613800482422 0.9897759150143972 1.0142908315769676 1.0753946453291636 1.4953970182016914 1.0 20.927488484444595 2.0306035857941107 1.4114318459283115 1.219522710008104 0.8042015823678105 0.462104301338478 0.1750679797136886 0.3552368662494024 1.3223030111751708 0.11634338139540233 0.05647259505895978 107.30095463014858 -2.0306035857941107 -0.4153211276402936 SEEPAGQILSHLS(ph)SELK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEEPAGQILSHLSSELK 17 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SEEPAGQILSHLS(0.98)S(0.02)ELK 198.64 9.0269e-12 148920000.0 216080.0 182940.0 191070.0 144880.0 185920.0 230270.0 220520.0 197020.0 314240.0 229710.0 True False 214916.64928874504 189029.04731043457 217970.99518978814 163221.79314511907 209595.8099658242 214351.97689727484 209852.60513179292 211722.6328472887 236799.7626002694 215049.71113537482 0.999381250753943 0.8790016332151215 1.0135842268236035 0.758995640047013 0.9746388816764449 0.9967554746555286 0.9758330016992662 0.9845287944330616 1.1011396451083946 1.0 17.714310667826595 3.013645638863359 24.999975830932602 1.0035618550652041 0.9111942947396601 0.28741999025733633 0.07291983323578477 306.63160061473025 561771.1791195843 0.020159377605383173 0.024084275677961325 1031.9190712274335 -3.013645638863359 -0.09236756032554405 SEEPAGQILSHLSSELK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEPAGQILSHLSSELK 17 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 212.55 1.4680000000000002e-12 115588000.0 126041.0 186212.0 192126.0 200566.0 208237.0 247110.0 243440.0 247430.0 270310.0 237650.0 False True 125362.40926047163 192409.95385246904 219175.67081087118 225957.63503550485 234754.7476326018 230027.8673343707 231663.87716889044 265894.483024082 203695.72246842788 222482.9735375988 0.5634696771044633 0.8648300172954695 0.9851345805292885 1.015617651286555 1.0551582617756101 1.0339122301217214 1.0412656460191554 1.1951228392726727 0.9155564546336129 1.0 17.763335406323584 5.059552405367889 1.0279835130679327 1.0586071089844162 1.8678633070378297e-11 0.8231172654172425 0.06643316009773946 1.2169415127961076 0.6690180369419914 0.020078737394452484 1.649813363233469 114697.09155511648 -5.059552405367889 -1.0586071089657376 SEEQLKEEGIEYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEQLKEEGIEYK 13 1 E9PEX6;P09622-2;P09622;P09622-3 E9PEX6 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial 0 ; 185.12 8.1368e-06 1835890000.0 1689310.0 1359740.0 1446050.0 1027130.0 1486290.0 2970010.0 1616790.0 1486590.0 2948730.0 1890500.0 False True 1680214.9426599836 1404998.1239198134 1649641.270708082 1157164.5526859874 1675560.2215689821 2764700.199351521 1538579.6909624133 1597526.894551064 2222055.002457653 1769846.6714615186 0.9493562181137882 0.7938530193463497 0.9320814606758153 0.6538219221727352 0.9467262043583268 1.562112833801848 0.8693293694712392 0.9026357595326859 1.2555070663961563 1.0 20.755192948895843 2.995891751018944 24.993934407725035 1.0919088731553157 0.8321137527384604 0.310693186882985 0.19966484925709235 241.81545346271224 1471181.7622780362 0.05989160729751032 0.07001543988502291 990.5850083392746 -2.995891751018944 -0.25979512041685526 SEESSHYSTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEESSHYSTEK 11 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 194.17 6.3293e-07 1173050000.0 982650.0 1582140.0 1765960.0 1646300.0 1755390.0 2070840.0 1937240.0 1964700.0 2065820.0 2092720.0 False True 977359.5215826785 1634800.5734761734 2014591.818000512 1854721.4112010594 1978928.5114883177 1927687.7050330166 1843528.3002245363 2111315.89054445 1556726.341569784 1959160.8179322693 0.4988664088403932 0.8344391938184885 1.0282932363494006 0.9466917642618858 1.0100898779595395 0.9839354112173038 0.9409785472181026 1.0776633909883762 0.7945883397222995 1.0 20.901804395572235 4.679776247512868 2.5060819942142594 0.9796296869379686 0.4270007160177528 0.798855726879578 0.07176287058997978 0.16627940633141583 1.4420507340513427 0.016638811088919424 0.18466255353159874 47838.356123671736 -4.679776247512868 -0.5526289709202158 down SEESSHYSTEKESEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEESSHYSTEKESEK 15 1 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 109.79 0.00058405 49277000.0 20939.0 32783.0 30772.0 39977.0 42981.0 39533.0 51014.0 37464.0 64314.0 51072.0 False True 20826.266750541614 33874.16233725802 35104.43012498119 45038.084101065826 48454.375581653876 36800.176760672104 48546.257927595194 40259.7539183373 48464.67646344746 47812.54123506094 0.43558167402467435 0.7084786012674452 0.7342096700611912 0.9419721884190375 1.0134239747566958 0.7696762357756992 1.015345695367395 0.8420333426832126 1.0136394178502335 1.0 15.545101466468868 4.85494013873 0.8855390480336531 0.9347827881792528 0.08481456645309236 0.7804059917370628 0.08427287129726314 1.1604739129037693 0.619870739728252 0.02639595937140685 1.0037055621069977 71604.47069101816 -4.85494013873 -0.8499682217261604 down SEEVPAFGVAS(ph)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEEVPAFGVASPPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK 44 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK 245.02 4.9474999999999994e-55 448212000.0 181018.0 178509.0 173547.0 176439.0 155710.0 202069.0 198392.0 201108.0 254500.0 218656.0 True False 180043.41920099064 184450.56415403073 197980.90910243453 198776.15930930164 175538.74553452292 188100.4456492614 188795.02102896202 216115.70016573192 191781.88512528155 204701.18687918037 0.8795426247687399 0.9010722749883123 0.9671703038013535 0.9710552358771821 0.8575365302504581 0.9189025648409302 0.9222956833190881 1.0557618324572229 0.9368870207795907 1.0 17.643159941721162 1.7677572407499613 24.999999999322682 1.0022724166452115 0.9180177506118151 0.43321872590422283 0.04220784907783759 19.963253119457836 17103.45758845024 0.019498531381316273 0.010814079112012834 58.58106201719966 -1.7677572407499613 -0.08425466603339637 SEEWADNHLPLTDAELAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEEWADNHLPLTDAELAR 18 0 O60664-4;O60664;O60664-3;O60664-2;K7ERZ3 O60664-4 PLIN3 Perilipin-3 0 57.93600000000001 0.087877 721100000.0 363360.0 498040.0 425630.0 443280.0 423100.0 408810.0 396760.0 361580.0 379790.0 447230.0 False True 361403.7101330912 514616.9603284626 485555.0043577195 499399.20254947705 476979.27708982443 380549.92693522805 377567.20302961225 388562.93566603644 286195.8434252683 418687.39850713324 0.8631826785848056 1.2291197732804346 1.1597077105473166 1.1927734255440428 1.139225299807293 0.9089118236949866 0.9017878359269024 0.9280502280495945 0.6835549492192141 1.0 18.675513971486 2.7056303824036965 4.927250258490621 0.8832322142161433 1.1302938248971055 0.48604518936221663 0.11921350107539716 0.1630263133857908 10.396796583822551 0.037486814045958765 0.0362156689887115 507.7271442568542 -2.7056303824036965 0.24706161068096222 SEFLVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEFLVR 6 0 Q96QR8;Q00577 Q96QR8;Q00577 PURB;PURA Transcriptional activator protein Pur-beta;Transcriptional activator protein Pur-alpha 0 ;; 118.42 0.050903 953890000.0 610290.0 953870.0 844640.0 979380.0 912240.0 763300.0 773530.0 718550.0 795450.0 791790.0 False True 607004.2664495938 985618.9863234079 963557.9702575095 1103369.4075819075 1028408.3567299021 710534.8676149291 736111.398728442 772171.8497229684 599422.0059839111 741257.284314476 0.818884723690721 1.3296584157482116 1.2998967978420881 1.488510711368344 1.3873838119256894 0.958553639404759 0.9930578954231891 1.0417055805894475 0.8086558050330178 1.0 19.499614851488687 2.727750676626446 24.21747103064881 0.97220939256819 1.2828371824987368 0.430168823890407 0.17433866985471502 459.9038342878737 1030318.321052819 0.0569261343584332 0.05419631779248444 534.257560334882 -2.727750676626446 0.31062778993054685 SEFYANEACKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEFYANEACKR 11 1 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753;P49753-2 Q86TX2 ACOT1;ACOT2 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial 0 88.803 0.020374 199020000.0 88448.0 109640.0 99323.0 99762.0 100280.0 137040.0 95300.0 74144.0 152200.0 105690.0 False True 87971.80579549662 113289.30112122044 113306.81506900761 112391.8589711716 113050.06359387301 127566.74735746093 90689.97491864636 79677.00177560336 114692.34937551238 98944.77371423865 0.8891000756600552 1.14497508932013 1.145152096625617 1.135904957403504 1.1425571998413147 1.2892722128597223 0.9165716542095201 0.8052674111491495 1.1591552041622142 1.0 16.594335885350006 2.2054746168965202 24.97792568992681 0.9367453559248393 1.127703447260738 0.2530778774098814 0.12453412560382444 210.41206271949244 158847.14563611185 0.0464590723418134 0.03431451709404027 160.49984484032902 -2.2054746168965202 0.19095809133589858 SEGEGKPQGEGKPASQAKPESQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEGEGKPQGEGKPASQAKPESQPR 24 3 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 0 ; 163.15 7.5065e-12 790090000.0 751238.0 517690.0 516577.0 455267.0 477034.0 758635.0 701460.0 657128.0 996520.0 663675.0 False True 747193.418078388 534920.9986997871 589306.5514322241 512903.75552042224 537781.4522979616 706192.3480847008 667527.6999625773 706166.228188371 750940.9986838729 621318.6932992458 1.2025928499120775 0.8609446399549305 0.9484770984484067 0.8255083277743783 0.8655484827638202 1.136602448470961 1.074372471264237 1.1365604090206571 1.2086245058817136 1.0 19.244973935000665 2.7297451672559405 24.62334165076211 1.1178577453852325 0.9302302360924738 0.3766522790111354 0.10917253669105079 509.4786612202847 1423074.0065219672 0.034235408632764926 0.0327269940082354 536.7167724662228 -2.7297451672559405 -0.18762750929275873 SEGEIAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEGEIAR 7 0 P50395;P50395-2;Q5SX91 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;; 154.11 0.0039561 1289710000.0 1169280.0 1323620.0 1286970.0 1341040.0 1307360.0 1149580.0 1321840.0 1201400.0 1411660.0 1341540.0 False True 1162984.7263992217 1367675.8915548138 1468164.1894562293 1510815.5265000695 1473844.5466701817 1070112.240420241 1257897.5492808342 1291054.5685855886 1063775.308274873 1255921.768649822 0.9260009304954462 1.0889817548310616 1.168993345050925 1.202953531193484 1.1735162041618543 0.8520532624979217 1.0015731717375487 1.0279737168450676 0.8470076200832828 1.0 20.26031517089765 2.7503858334697546 24.849252950954195 0.9587842953038854 1.1190147760853044 0.45108389430020046 0.09103442089433444 703.4710143467579 1478257.7594713694 0.02907455544500036 0.030605800441692074 562.8411393071751 -2.7503858334697546 0.160230480781419 SEGFDTYR ddPTM_BT-474_Trastuzumab_2h_R1 6 SEGFDTYR 8 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 ;;;;; 208.22 0.0001327 15363880000.0 11096900.0 12520500.0 11554640.0 11791490.0 11472930.0 13315000.0 13291700.0 11842700.0 15409100.0 13206700.0 False True 11037155.523381505 12937237.273697928 13181432.877268696 13284291.424991302 12933939.63011619 12394565.390138594 12648729.691775126 12726462.410012089 11611733.77636141 12363837.09917527 0.8926966147198541 1.0463772023137465 1.066127996635281 1.074447302923251 1.046110485472099 1.00248533612315 1.0230424091092933 1.0293295121836414 0.9391691012441412 1.0 23.559623215289946 1.2571151346271752 24.904951677568988 0.9695845573599832 1.0267486602675755 0.1482476833288472 0.05001530862079748 342.99821906940986 460394.9965478178 0.03297985180339053 0.011993825312443345 18.076532845325296 -1.2571151346271752 0.05716410290759233 SEGGFIWACK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEGGFIWACK 10 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ; 192.14 1.6645e-06 1488400000.0 816970.0 873700.0 875490.0 827950.0 819480.0 900690.0 1033240.0 843830.0 1146120.0 999700.0 False True 812571.5242939005 902780.576337197 998751.3821045024 932768.385108373 923835.9205614974 838427.420296202 983258.2338398955 906800.8794819178 863674.0832211717 935898.2901137695 0.8682263156983894 0.9646139819610668 1.0671580369946956 0.9966557209918441 0.9871114525160574 0.8958531382659981 1.0506037293009358 0.9689096444141228 0.9228290000574549 1.0 19.835992226124166 4.705440648354957 4.270594627868711 0.9863352365452667 0.8624135603392826 0.3427422961526556 0.048577070417898646 0.20865442818006993 8.23691167994704 0.011541055184886333 0.07243443853537948 50750.53774814006 -4.705440648354957 -0.12392167620598404 SEGSMSTDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEGSMSTDKR 10 1 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 0 ;; 123.75 0.00072767 692370000.0 362197.0 380747.0 375535.0 347311.0 323833.0 380920.0 396648.0 372345.0 564610.0 442362.0 False True 360246.9715958696 393419.9337285784 428407.0637912656 391280.5369894012 365071.2130414308 354587.8969892299 377460.6208974947 400131.2746295995 425469.4308863864 414130.07843483787 0.8698884489563908 0.9499912085967497 1.0344746399739573 0.9448252067761073 0.8815375459352771 0.8562234801426606 0.9114542520651202 0.9661970850846057 1.0273811370920085 1.0 18.659724464473456 1.4866225395009223 3.4997868797313134 1.0120963017727562 0.9238735838894894 0.3701726538917569 0.048248362818721406 0.26440372537026374 6.553340902061533 0.03772460244581325 0.013994090288081972 30.663557530427592 -1.4866225395009223 -0.08822271788326685 SEGTYLNSVIESHTEFIFTTIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEGTYLNSVIESHTEFIFTTIK 22 0 A0A0A0MSX9;P41252;J3KR24;Q5TCC6 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 229.15 3.0527e-26 75134000.0 107670.0 108540.0 96095.0 88827.0 101070.0 109750.0 115490.0 121010.0 140060.0 124640.0 False True 107090.31668326157 112152.68828618448 109624.34072728675 100072.48909236255 113940.66541117617 102163.24082371098 109903.30748535643 130040.38067632915 105544.08970784649 116685.36849032744 0.917769880395405 0.9611546823497524 0.939486605266829 0.8576267135039986 0.9764777442565236 0.8755445703732746 0.9418773656653173 1.1144531860231368 0.9045186305136064 1.0 16.832264143195555 1.9749825625089 24.357640776814176 1.0213220628625874 0.9223478399274511 0.2895568021011078 0.05822470358296117 538.7846078364694 524574.1873053443 0.022566233085485075 0.014643869905742428 94.40229717687534 -1.9749825625089 -0.09897422293513636 SEHPGLSIGDTAK ddPTM_BT-474_Trastuzumab_2h_R1 6 SEHPGLSIGDTAK 13 0 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ;;;;; 220.31 2.101e-11 11623220000.0 9310460.0 10729980.0 10265940.0 9519310.0 9390180.0 13040370.0 12388080.0 10559450.0 14630140.0 11665580.0 False True 9260333.51784936 11087120.897890113 11711295.11884991 10724453.669963168 10585963.763042614 12138919.915629111 11788821.243338743 11347449.778800633 11024738.030832183 10921072.696994485 0.8479325955222177 1.0152043856407371 1.0723575827924758 0.9819963631333186 0.9693153829070202 1.1115135163389016 1.0794563474138457 1.0390416851563937 1.009492229995523 1.0 23.380611232797907 2.765992260544967 24.830107196759275 1.0519611265580657 0.9849987318635621 0.24813552180942722 0.060464050177398865 1050.9721070248586 951299.1805578431 0.018751574111604826 0.01988464629957182 583.434706934838 -2.765992260544967 -0.0669623946945036 SEHPPLCGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEHPPLCGR 9 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;; 90.709 0.011247 1316220000.0 1130160.0 1692530.0 1624610.0 1671170.0 1583460.0 1644500.0 1669040.0 1321230.0 1779480.0 1662250.0 False True 1124075.3441325813 1748864.8378940106 1853340.9666367376 1882739.9506510792 1785104.2450972658 1530819.5857366049 1588302.1588480296 1419826.8916699972 1340950.9978103603 1556163.7818761757 0.7223374282476549 1.1238308321155672 1.1909678070018266 1.209859767062031 1.1471184883541437 0.9837136704794563 1.020652310088535 0.9123891123839131 0.8617029990208704 1.0 20.56956247724842 2.194844146547067 1.7096128597485423 0.9211166361566322 1.0904383601044358 0.16993338280962667 0.13485817756357693 0.5833680554205335 3.3562227073313227 0.07529778195732827 0.044785936938012305 156.61889175480619 -2.194844146547067 0.16932172394780365 SEIDLFNIR ddPTM_BT-474_Trastuzumab_2h_R1 6 SEIDLFNIR 9 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ;;;;; 241.52 4.8783e-10 987773000.0 1609319.0 1753187.0 1465752.0 1348037.0 1183368.0 1431239.0 1335508.0 1229922.0 1757960.0 1480087.0 False True 1600654.6053161514 1811540.769471077 1672117.1410552259 1518698.3459826538 1334062.9004283415 1332300.8167042094 1270904.3759040032 1321705.0250573694 1324734.3134571342 1385626.5804937659 1.1551846852892795 1.3073802097716236 1.2067588516231909 1.0960372494019768 0.962786741542552 0.9615150542431469 0.9172055399306199 0.9538681226700932 0.956054345453641 1.0 20.402107080005727 3.486885065421876 2.0669162072040157 0.950967462824623 1.2361900016378196 0.8991677333731287 0.039865013469524535 0.08191567261651782 0.6992957158089326 0.011240468887291693 0.018590173644420005 3068.2098894790042 -3.486885065421876 0.2852225388131966 SEIDLLDIR ddPTM_BT-474_Trastuzumab_2h_R1 5 SEIDLLDIR 9 0 P12429;D6RA82 P12429 ANXA3 Annexin A3;Annexin 0 ;;;; 155.07 0.00017261 422963000.0 1406750.0 1681400.0 1434800.0 1457740.0 1288930.0 1469040.0 1533360.0 1274656.0 1731080.0 1584970.0 False True 1399176.2143046192 1737364.3825722353 1636807.3684948317 1642289.7345345523 1453067.595413349 1367488.7225481914 1459185.5187959645 1369777.3032920193 1304478.5292835862 1483815.8576389141 0.9429581218595576 1.170876004342462 1.1031068040338654 1.1068015792389534 0.9792775754031282 0.9216027147224148 0.9834006768992603 0.9231450764191482 0.8791377464851372 1.0 20.500880633146213 3.1223582744148084 4.091756563435156 0.9399863528628264 1.0888519803958556 0.5285784553764508 0.06211554193465275 0.15789483782082991 4.81132254995499 0.01760733930633898 0.02146080558650965 1325.4345112145302 -3.1223582744148084 0.14886562753302923 SEIPS(ph)PQSQLLEDAEANLVGR ddPTM_BT-474_Trastuzumab_2h_R1 5 SEIPSPQSQLLEDAEANLVGR 21 0 Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q9ULJ8 PPP1R9A Neurabin-1 1 SEIPS(0.997)PQS(0.003)QLLEDAEANLVGR;SEIPS(0.999)PQS(0.001)QLLEDAEANLVGR;SEIPS(0.992)PQS(0.008)QLLEDAEANLVGR;SEIPS(1)PQSQLLEDAEANLVGR;S(0.004)EIPS(0.966)PQS(0.03)QLLEDAEANLVGR 233.59 9.827599999999999e-30 293665000.0 130419.7 127585.3 129575.4 133482.1 160535.4 138084.1 144574.9 118094.6 152895.0 142859.0 True False 129717.53482619072 131831.8995835576 147818.49003043314 150380.92017377212 180978.6316221363 128538.67118200807 137581.25975724866 126907.41872422793 115216.07593803531 133741.61631225664 0.9699115234507815 0.9857208490419296 1.1052542514912498 1.1244138086582298 1.3531960852005247 0.961097037154831 1.0287094140991038 0.9488999925642263 0.8614826044051364 1.0 17.029088932426717 2.575767965508269 23.925277984757255 0.9619246592016016 1.107259160827974 0.33008163449128225 0.10516155158778025 39.83672797404912 9654.177361474847 0.03606590885044526 0.03400324570008822 376.50258775024173 -2.575767965508269 0.1453345016263724 SEISQVFEIALKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEISQVFEIALKR 13 1 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5;Q5JW28 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 117.48 0.00080683 201730000.0 109980.0 136250.0 112880.0 96699.0 104980.0 103630.0 114820.0 98242.0 132900.0 135300.0 False True 109387.8798999267 140784.99888513572 128772.52282945145 108941.08348522826 118348.58073479027 96466.30201878039 109265.71794500497 105573.31690276795 100148.57576876208 126665.03816384233 0.8635996284817956 1.1114748073026204 1.0166382507451115 0.860072243015567 0.9343429130120764 0.7615858599750343 0.8626351795960367 0.8334842702704431 0.7906568159654207 1.0 16.950658843997786 3.7301779576339187 9.703734523742256 0.8538724889972378 1.0087174941731778 0.33583967132595527 0.08517822707002448 0.19089336608768007 199.52099516299995 0.02107885917245419 0.03425625645449999 5372.518970041792 -3.7301779576339187 0.15484500517594002 SEKPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEKPLR 6 1 O15371-2;O15371;O15371-3;B0QYA5;B0QYA4 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ; 105.2 0.03026 503900000.0 1093600.0 1471650.0 1548270.0 1560230.0 1578090.0 1374650.0 1484660.0 1299050.0 1321100.0 1516760.0 False True 1087712.1791103822 1520632.9806187872 1766252.9581959143 1757754.9580260138 1779050.4074277522 1279623.6810780335 1412841.32384803 1395991.707442242 995532.6068330444 1419959.0782364341 0.7660165675065107 1.0708991575358555 1.243875957601237 1.2378912779719797 1.25288850551757 0.9011694074080678 0.9949873524543791 0.9831210834442079 0.7010995049726924 1.0 20.437417922662544 2.718858010697154 24.64978484158593 0.9273008596566812 1.1259656035972845 0.2877298331805831 0.15490890870378463 944.1103159326817 1181167.5992646709 0.05212428190997688 0.04920861566438252 523.4292773562269 -2.718858010697154 0.1986647439406033 SELDMLDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SELDMLDIR 9 0 P08133;P08133-2 P08133 ANXA6 Annexin A6 0 98.033 0.01145 0.0 63421.0 91581.0 86369.0 76185.0 94732.0 117840.0 70888.0 87218.0 123860.0 88388.0 False True 63079.5483827355 94629.21822311652 98529.00446719419 85830.01318857603 106795.55867944518 109693.99816552234 67458.87662154244 93726.65004403015 93336.3626389682 82747.00216722612 0.7623182318467076 1.1435969369848256 1.1907259705683801 1.0372582805491775 1.290627525860315 1.3256552538766075 0.8152425448019566 1.1326893735027994 1.1279727385209883 1.0 16.336419425163328 4.740878878723575 24.418288085855924 1.1202988339592614 0.7623180561210937 0.3732587280050199 0.13832035588055477 166.19067771387915 1750332.0512456032 0.03286556116647056 0.22070663219326161 55065.41019393865 -4.740878878723575 -0.35798077783816773 SELEEQQMHLNVGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SELEEQQMHLNVGLR 15 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8Y5T0 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 176.56 7.9238e-07 610270000.0 431380.0 419030.0 454320.0 425080.0 402850.0 501420.0 457490.0 440980.0 484740.0 442190.0 False True 429057.49801082327 432977.16024101584 518284.3069797695 478895.0844155658 454150.5596209789 466758.0156157179 435359.46091848396 473888.1668510671 365282.3221832184 413969.05562209483 1.0364482373351656 1.0459167282210418 1.2519880409923736 1.1568378793335239 1.0970640279827222 1.1275190966008175 1.0516715078238024 1.144742971522179 0.8823904038776228 1.0 18.659163404071897 1.244587694092968 24.999991402412256 0.941195180585367 1.1159535413570691 0.5217999748634269 0.06615949625813744 99.88254101891299 414320.622215861 0.047070486163202765 0.016194854365710915 17.562554869697138 -1.244587694092968 0.17475836077170215 SELHLMDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SELHLMDR 8 0 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial 0 ;;; 128.38 0.0018756 568250000.0 703630.0 900450.0 1051020.0 839500.0 1043790.0 1760820.0 885710.0 708120.0 1094170.0 1112460.0 False True 699841.7342606428 930420.9339164805 1198994.4803703919 945780.6139241256 1176710.4694719655 1639098.6579244316 842864.8235592259 760963.5101605009 824526.4646268351 1041461.8503750769 0.6719801920815425 0.8933797561393098 1.151261066296937 0.9081279487899704 1.129864208706425 1.573844166576163 0.8093093599690403 0.7306686364809657 0.7917010731885055 1.0 19.99017856253593 -2.8027228066319734 2.059446088552475 2.653078897491377 0.9632645372789339 0.0019992694188696314 0.25217319576852554 15352941.072906626 2083082.4255685501 124662633.48792656 0.06938707752787353 0.001574987797513208 2.8027228066319734 -1.6898143602124431 SELIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SELIAK 6 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 99.511 0.090068 333940000.0 587660.0 581110.0 497650.0 491020.0 443820.0 509780.0 570720.0 512630.0 743730.0 584000.0 False True 584496.1038551644 600451.8950615877 567714.7943486578 553183.0816545846 500337.8462727629 474540.1084930412 543112.0932378783 550885.0536823948 560447.706971418 546728.6200124454 1.069079032010176 1.0982631475336326 1.0383849931538882 1.0118056041075594 0.9151484446915794 0.867962808462888 0.9933851518976915 1.0076023707517905 1.0250930470013813 1.0 19.060465373788627 3.773679194130545 2.2981212134305484 0.9689910733006614 1.0808135835222963 0.4946388849684601 0.04570389906413857 0.27836645932610304 2.8686592976743035 0.014316244782356413 0.029284699129194673 5938.533273107753 -3.773679194130545 0.11182251022163492 SELNEIKENQRS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 6 SELNEIKENQRSPVR 15 2 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR 135.81 1.3935999999999997e-05 4230410000.0 1535390.0 1700490.0 1606520.0 1889920.0 1774000.0 1984430.0 2240220.0 1743920.0 2959290.0 2243000.0 True False 1527123.6308378647 1757089.7816820887 1832704.0518778372 2129183.6782221394 1999908.384678209 1847251.024945755 2131852.0001285365 1874060.165846328 2230012.631954402 2099849.8196710856 0.727253738115933 0.8367692609356769 0.8727786314570376 1.013969503093154 0.9524054367809356 0.8797062569146508 1.0152402234472482 0.8924734275234385 1.0619867245095198 1.0 21.00185471999488 4.415339515231241 1.3714429128446675 0.9629330872796515 0.7021963950825288 0.6649399312227797 0.056098422849756545 0.43425937395541725 1.1145317835544752 0.015135166617490441 0.13412313943125773 26021.930657072495 -4.415339515231241 -0.2607366921971227 SELNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SELNLR 6 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;K7ERC6;K7EPY4;K7EP41;A0A2R8YF08;K7ELR7;K7ENA0;K7ERK8;A0A0J9YXM3;A0A0J9YXH9;K7EIL4;A0A0J9YYI8 P06744 GPI Glucose-6-phosphate isomerase 0 ;; 160.69 0.020314 2256870000.0 1564320.0 1793700.0 1924120.0 1733330.0 1639920.0 1845750.0 2112750.0 1641910.0 2128580.0 1941900.0 False True 1555897.8749322905 1853402.2201854524 2195019.371249146 1952769.4002776702 1848754.091432628 1718157.6469281472 2010548.2110112258 1764437.661650045 1604019.980510697 1817966.2794557684 0.8558452885045088 1.019492078115053 1.2074037874378247 1.0741505067202108 1.0169353042049143 0.9450987437690537 1.1059326202756132 0.9705557697023138 0.8823155845282681 1.0 20.793894009278024 1.5363425037511018 6.447164933778988 0.9365973141169208 1.0362916241878233 0.14451364508430253 0.09170771466198302 0.23172039675634162 19.326752751820617 0.052191875243415765 0.023913188772185293 34.3828999692629 -1.5363425037511018 0.09969431007090246 SELVAMLEEEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 SELVAMLEEEELR 13 0 B4DZG7;F8VYN9;P40616-2;P40616 B4DZG7 ARL1 ADP-ribosylation factor-like protein 1 0 ;;; 184.55 2.1887e-05 108338000.0 139444.0 158938.0 149023.0 145654.0 149918.0 162597.0 164000.0 137643.0 154179.0 149331.0 False True 138693.2489976849 164228.15524995013 170004.1430688637 164093.78146575906 169009.16866639646 151357.05210216774 156066.69345916042 147914.6195969917 116183.6513427536 139800.56773129865 0.9920792973048431 1.1747316760944928 1.2160475871286682 1.1737704941309879 1.2089304886889853 1.0826640732466912 1.116352358161562 1.058040192521167 0.8310670924174103 1.0 17.09301069395893 1.4862941175271833 3.1473215238832615 0.916922941825689 1.1437773386815855 0.5789155001976308 0.07413477597481698 0.15176402370972067 3.0141715988382245 0.05334739241430812 0.019140096891004526 30.640377914572127 -1.4862941175271833 0.22685439685589648 SELVAMLEEEELRK ddPTM_BT-474_Trastuzumab_2h_R1 6 SELVAMLEEEELRK 14 1 B4DZG7;F8VYN9;P40616-2;P40616 B4DZG7 ARL1 ADP-ribosylation factor-like protein 1 0 ;;;;; 313.88 1.315e-55 1862753000.0 1532815.0 1372114.0 1371821.0 1287369.0 1263943.0 1643988.0 1654369.0 1453542.0 2197970.0 1666468.0 False True 1524562.4943517572 1417783.9850295705 1564961.4727181136 1450349.7834030828 1424898.6490729018 1530342.979091488 1574340.8511666944 1562012.6849767223 1656309.7447890602 1560112.5855049642 0.9772131245632504 0.9087703017091385 1.003108036726452 0.9296443070059881 0.9133306546666327 0.9809182960960214 1.0091200249225123 1.001217924584041 1.061660395652125 1.0 20.573218714237846 2.3962111563492576 3.039934828174987 1.0166563596413973 0.9464246879371321 0.5388694332624806 0.031074820769946405 0.19895746358598143 3.73405793103159 0.011363512821177308 0.009273391602099805 249.0067708530237 -2.3962111563492576 -0.07023167170426525 SELVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SELVQK 6 0 P31946-2;P31946;Q4VY19;A0A0J9YWE8;Q4VY20 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ; 113.25 0.061180999999999985 393120000.0 746460.0 764740.0 657970.0 641560.0 647660.0 745650.0 816150.0 802220.0 980930.0 777590.0 False True 742441.1422995032 790193.9086049072 750606.456822237 722781.4302193715 730135.6620184266 694104.9705712986 776669.7065042299 862085.7299906184 739192.9452885762 727963.5404717079 1.0198878117143257 1.085485556176172 1.0311044648415453 0.992881360172271 1.0029838328789258 0.9534886460406113 1.066907425062746 1.1842430040273741 1.015425779166896 1.0 19.473506670330764 2.0092990035915963 24.83306300852726 1.0966645857714175 1.0162644181846 0.10319119926123044 0.05770842747105615 231.9288605766566 619364.933573995 0.021744438718075552 0.016037255931192092 102.16426233830327 -2.0092990035915963 -0.08040016758681756 SEMT(ph)PEELQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEMTPEELQKR 11 1 P62316;K7ERG4 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 1 SEMT(1)PEELQKR;S(0.001)EMT(0.999)PEELQKR 74.789 0.023359 691710000.0 676790.0 673470.0 636040.0 621000.0 663870.0 798230.0 748970.0 712550.0 1192350.0 809360.0 True False 673146.2378384384 695886.0418287878 725588.9034412134 699618.5363274349 748409.9094342291 743050.2389313042 712739.4597567517 765724.0992555848 898511.3191714328 757705.9518720416 0.8884003565965345 0.9184117402133147 0.9576127805892543 0.9233377863786185 0.9877313324320008 0.9806577830033829 0.9406544293281681 1.010582135937738 1.185831148549787 1.0 19.531278554916735 1.499773966047771 4.209808624098561 1.096007129225554 0.9455830280061076 0.5828668475291792 0.05052612030847866 0.11614160573372523 4.386059027072527 0.030884598426933287 0.012384310913694595 31.606322417460763 -1.499773966047771 -0.15042410121944638 SENEEFVEVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SENEEFVEVGR 11 0 P10644;P10644-2;K7EM13 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 0 ; 224.58 1.4201e-11 493200000.0 325790.0 408440.0 365920.0 351550.0 364150.0 418590.0 395550.0 356870.0 403200.0 421350.0 False True 324035.9828386722 422034.6784928058 417438.3553663428 396056.1939547661 410522.3440138493 389653.85855487135 376415.7353522618 383501.4515491414 303836.7626031969 394459.08226411603 0.8214691901090745 1.069907368009912 1.0582551502435447 1.0040488653005097 1.0407222509810987 0.9878181947753271 0.9542580010877452 0.9722211220183344 0.7702617996757352 1.0 18.5895161298688 1.4192041171409346 8.478168636349052 0.8797376245074424 0.9949007196146287 0.1972900702514716 0.08371853168092099 0.3578557485129783 44.70616878204135 0.05088310512077885 0.01948410703731068 26.254522083394612 -1.4192041171409346 0.11516309510718625 SENFEELLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SENFEELLK 9 0 P29373;Q5SYZ4 P29373 CRABP2 Cellular retinoic acid-binding protein 2 0 ;;; 217.64 1.2997999999999998e-06 852430000.0 979130.0 869460.0 836870.0 682020.0 729000.0 1028990.0 1050410.0 815100.0 1247450.0 1010980.0 False True 973858.4728715686 898399.4505003318 954694.0217955618 768363.6620709139 821833.8288784745 957858.3432819156 999597.6553441264 875926.900993935 940032.662473607 946458.3908564757 1.0289501179130525 0.9492223421331243 1.0087015245663715 0.81183036623047 0.8683253662475061 1.0120448532503619 1.0561453783927717 0.9254785096271217 0.9932107650532277 1.0 19.852179556568082 2.7068814290359495 24.86341404936661 0.9921418290376547 0.931713496766845 0.1896087912095653 0.06563396837757983 1225.2511862692509 961637.3034023321 0.02262885176649865 0.021336454440414824 509.19183265909334 -2.7068814290359495 -0.06042833227080968 SENLGQGDKPDYFSSVATVVYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SENLGQGDKPDYFSSVATVVYLR 23 1 P27694 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 93.21 0.0042312 601850000.0 1081800.0 846790.0 709950.0 706890.0 695160.0 993590.0 975740.0 953030.0 1448600.0 1079700.0 False True 1075975.70899928 874974.8932546361 809904.7890039765 796382.2015209352 783684.505463868 924905.4619592791 928539.7285112279 1024149.937988282 1091611.9402455124 1010792.6216223241 1.0644871024803653 0.865632449760367 0.8012571240419996 0.7878789224269763 0.7753168045548778 0.9150298905771632 0.9186253526672166 1.0132146951612284 1.0799563796711071 1.0 19.94705560766713 1.9008367081776927 1.7346555531362438 1.042756470152782 0.8552117007201612 0.4551298941931067 0.07983571175190105 0.31946628775933295 1.796176997206637 0.055160522477059805 0.025248742997978146 79.58600560930668 -1.9008367081776927 -0.18754476943262088 SENQEFYQDTFGQQWK ddPTM_BT-474_Trastuzumab_2h_R1 3 SENQEFYQDTFGQQWK 16 0 O60506-2;O60506 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;; 374.47 4.0882999999999995e-104 485227000.0 675380.0 665480.0 626340.0 615520.0 635330.0 777120.0 723540.0 689800.0 883640.0 755530.0 False True 671743.8291217721 687630.0995088452 714523.2277551257 693444.7688893132 716235.5096040611 723399.5235437093 688539.606008786 741276.3787334266 665878.7621693673 707311.4285582241 0.9497143719154197 0.9721744506666645 1.0101960733359026 0.9803952557402097 1.0126169049240838 1.0227454192536929 0.9734603149454232 1.0480197955297235 0.9414223145336239 1.0 19.43198604662795 4.445060052602358 3.115074991152384 1.0021122954810993 0.9514702316022957 0.2352598836623655 0.027809335752859324 0.3121585498976766 5.8557441564266375 0.006508314737012898 0.027442049728151185 27865.064495898754 -4.445060052602358 -0.050642063878803545 SENSEDGAAWMQEPGRYS(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SENSEDGAAWMQEPGRYSPPPR 22 1 P35548 P35548 MSX2 Homeobox protein MSX-2 1 SENSEDGAAWMQEPGRYS(1)PPPR;SENSEDGAAWMQEPGRYS(1)PPPR;SENSEDGAAWMQEPGRYS(1)PPPR 190.6 1.0429e-17 1480020000.0 1256180.0 1464900.0 1445970.0 1459720.0 1431630.0 1698160.0 1571890.0 1414500.0 1626060.0 1573800.0 True False 1249416.8664547189 1513658.310949251 1649550.0074034538 1644520.402331536 1613939.5945641818 1580770.19623866 1495851.6754970727 1520057.1726854625 1225339.3010876845 1473358.7366020323 0.8480058762445156 1.0273521806645411 1.1195847735004216 1.1161710732609826 1.0954152267670854 1.072902448648961 1.0152664373830065 1.0316952246070972 0.831663919076254 1.0 20.49067731300739 -0.4977855331467445 5.971695366167762 0.9999999969949249 1.0279926363105611 0.0 0.09687286914625891 0.0 0.0 0.09342045787512467 0.022019412924293547 0.3178443288017766 0.4977855331467445 0.027992639315636225 SEPFS(ph)PSLRPEPPKHPESIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEPFSPSLRPEPPKHPESIK 20 2 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 SEPFS(0.966)PS(0.034)LRPEPPKHPESIK;S(0.027)EPFS(0.942)PS(0.031)LRPEPPKHPESIK 156.88 6.954199999999998e-09 2116630000.0 1013730.0 773710.0 728250.0 737030.0 668190.0 919330.0 907280.0 863670.0 1384540.0 959210.0 True False 1008272.1903159916 799462.4696324278 830781.2699375264 830337.9224306106 753280.0358275822 855778.8809700428 863391.4002538243 928121.4410273955 1043338.668885492 897992.3965790024 1.122807046203411 0.8902775487610644 0.9251540136670156 0.9246603040224742 0.8388490133071089 0.9529912326988775 0.9614684974427464 1.0335515585245187 1.1618569075419811 1.0 19.77634370396425 1.6639790289193213 2.765492098980277 1.0847919390958674 0.9358844824468807 0.33816370538334284 0.07796230915857365 0.23124880835229797 4.054220893798305 0.04850744513353027 0.020498231386194794 46.12952991345889 -1.6639790289193213 -0.14890745664898664 SEPHS(ph)PGIPEIFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEPHSPGIPEIFR 13 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR 162.81 2.564e-05 164462000.0 123289.0 175495.0 148705.0 166308.0 189458.0 175054.0 136821.0 142103.0 180891.0 175246.0 True False 122625.22572269576 181336.24498603216 169641.37143296908 187362.57574805658 213584.35329445524 162952.92901279163 130202.44552302294 152707.44744441297 136312.83686521562 164061.65024435084 0.7474338185679571 1.1052933133121166 1.0340099053027194 1.1420254243999235 1.3018542296529754 0.9932420451098237 0.7936190165654281 0.930793072098037 0.8308634995575958 1.0 17.323878519697992 2.472986708627357 24.170641800660054 0.8860299401522755 1.078413744055627 0.2638648630350764 0.1388488556622748 99.97813530727629 584461.0909445833 0.04791709654483496 0.04026765297422756 297.1575086727557 -2.472986708627357 0.1923838039033514 SEPHSLSSEALMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEPHSLSSEALMR 13 0 Q9NR28-2;Q9NR28;H7BZK7;A0A2U3TZH2 Q9NR28-2 DIABLO Diablo homolog, mitochondrial 0 160.38 4.3958e-05 353880000.0 301930.0 350540.0 379170.0 346120.0 364980.0 414740.0 362920.0 315960.0 407800.0 358080.0 False True 300304.4424275763 362207.5119940957 432553.8401952782 389938.75651151664 411458.0395940538 386069.99999294657 345364.1731109668 339538.53961237083 307303.15424003894 335227.02783228847 0.8958240759089876 1.080484214940167 1.2903310421965186 1.1632079878314585 1.2274011503628017 1.1516672819892508 1.0302396419054547 1.0128614682651405 0.9167016043640144 1.0 18.35477894611028 2.010461985855613 2.198012144467888 0.974001071391465 1.1449432585217199 0.3368388095473085 0.10036615966638113 0.37279398591409024 3.3758237418418866 0.05805540953272171 0.03133053598889242 102.43821113980844 -2.010461985855613 0.17094218713025489 SEPQPEEGS(ph)PAGGQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SEPQPEEGSPAGGQK 15 0 F8WE91;Q9Y6K1;Q9Y6K1-3 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 1 SEPQPEEGS(1)PAGGQK;SEPQPEEGS(1)PAGGQK;SEPQPEEGS(1)PAGGQK 270.95 2.3039e-33 1029880000.0 1173570.0 955740.0 928100.0 868510.0 875490.0 1286260.0 1230460.0 1058780.0 1415490.0 1158850.0 True False 1167251.6295158854 987551.2281429687 1058768.4128101864 978463.2769496631 986978.4620642174 1197343.8737303528 1170937.9489863338 1137791.5399759025 1066661.456094245 1084891.2008585988 1.0759158416918722 0.9102767423695631 0.9759212831408914 0.9018999104935987 0.9097487944257527 1.1036534103906064 1.0793137118815568 1.0487609624591274 0.9831967069601758 1.0 20.04911893747585 2.743407684508826 24.999574583529835 1.0492026307740434 0.950521424695345 0.36994789850687637 0.05715282328610531 405.0547307409284 2089140.6284623093 0.017434157952877068 0.017971503468047118 553.869798493287 -2.743407684508826 -0.09868120607869846 SEPRPPISS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEPRPPISSPR 11 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 S(0.004)EPRPPIS(0.121)S(0.876)PR 111.72 0.0042688000000000005 403540000.0 191180.0 258330.0 228920.0 227110.0 237350.0 215900.0 215030.0 223970.0 244250.0 195270.0 True False 190150.70812209466 266928.3578862175 261149.94619169022 255862.10271388714 267575.115616332 200975.34117393324 204628.17740562948 240683.77869661534 184057.8602823187 182807.70142094194 1.0401679286161163 1.4601592592183805 1.4285500236686068 1.399624308631979 1.4636971721459395 1.0993811508583962 1.119363001750362 1.3165953995691084 1.0068386553283009 1.0 17.479967324743935 2.7309573468675628 24.914504323004024 1.1442815283045848 1.3702738713532774 0.4246283394492225 0.14215187491854395 601.6003044908238 1971328.116632408 0.04524429264738742 0.04340894315007597 538.2169203089856 -2.7309573468675628 0.22599234304869253 SEPTQALELTEDDIKEDGIVPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEPTQALELTEDDIKEDGIVPLR 23 1 O43396;K7ER96 O43396 TXNL1 Thioredoxin-like protein 1 0 ;;; 255.79 1.3427999999999996e-43 713192000.0 681705.0 563464.0 469074.0 466094.0 468177.0 608963.0 647505.0 578171.0 916971.0 593457.0 False True 678034.7760245457 582218.5586188196 535115.5419357015 525101.4526103061 527796.5658475138 566866.8211547104 616182.7094406937 621317.0559128496 690995.7838318853 555582.0661758996 1.2204043602261938 1.047943398580628 0.9631620142437818 0.9451375135713196 0.9499884859141786 1.0203115897107413 1.1090759528685141 1.118317335527778 1.24373306105441 1.0 19.083640505259588 2.1882172461180565 3.781069342144771 1.129367392543046 1.0151612682159958 0.19232134951821123 0.09220344592671624 0.33581387501607374 9.900144104789463 0.037285120647880525 0.027246440528579125 154.24718470997857 -2.1882172461180565 -0.11420612432705024 SEPVINNDNPLES(ph)NDEKEGQEATCSRPQIVPEPMDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFR 37 2 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;H7C4B4 P23497 SP100 Nuclear autoantigen Sp-100 1 SEPVINNDNPLES(1)NDEKEGQEATCSRPQIVPEPMDFR;SEPVINNDNPLES(1)NDEKEGQEATCSRPQIVPEPMDFR;SEPVINNDNPLES(1)NDEKEGQEATCSRPQIVPEPMDFR;SEPVINNDNPLES(1)NDEKEGQEATCSRPQIVPEPMDFR 290.21 2.839699999999999e-92 932160000.0 357062.0 269463.0 261215.0 250008.0 250448.0 367118.0 352575.0 310102.0 450355.0 331726.0 True False 355139.61786531773 278431.9130611769 297991.8014785181 281658.98716610204 282341.06827840355 341739.99676281615 335519.6002827042 333243.3859060497 339371.044697824 310554.9626750828 1.1435644589485485 0.8965624334668432 0.9595460942296747 0.9069537473815446 0.9091500771597781 1.1004171172120685 1.0803871797525921 1.0730576740282352 1.0927889922431862 1.0 18.244489096703884 2.7322704551030346 24.959392664743547 1.0746209943572962 0.9561329275015223 0.3576796021059997 0.07065151033534486 490.4106888647004 1945946.6748009431 0.021748383763295583 0.02095662308165763 539.846705173325 -2.7322704551030346 -0.11848806685577384 SEPVKEES(ph)SELEQPFAQDTSSVGPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 SEPVKEES(0.75)S(0.249)ELEQPFAQDTSSVGPDR;S(0.001)EPVKEES(0.952)S(0.048)ELEQPFAQDTSSVGPDR 227.77 7.4555e-35 1008590000.0 582370.0 424930.0 431090.0 346790.0 457190.0 621990.0 582820.0 577530.0 854630.0 628030.0 True False 579234.5846273899 439073.5381743907 491783.72489854915 390693.57844281977 515410.43652256444 578993.2953069694 554626.7700113889 620628.2212379175 644017.8879552826 587948.5877164663 0.9851789709659468 0.746789000513988 0.8364400139280683 0.6645029626829018 0.8766250098913703 0.9847685790958725 0.943325286596068 1.0555824679303605 1.0953642910455552 1.0 19.165330480707055 2.7277776717761983 2.265774225411754 1.0254190431809307 0.8034745266078829 0.5777139360991865 0.08439207480858905 0.21360841740630182 2.163408109135315 0.02973473971779376 0.02931360133678557 534.2907700847063 -2.7277776717761983 -0.2219445165730478 SEPVKEESSELEQPFAQDT(ph)SSVGPDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 SEPVKEESSELEQPFAQDT(0.385)S(0.385)S(0.23)VGPDRK 124.32 0.0038129 563480000.0 151730.0 68269.0 74743.0 64937.0 77211.0 103760.0 89240.0 102860.0 195190.0 119820.0 True False 150913.10253878782 70541.29239551803 85266.16472219783 73158.01754185946 87043.3631845484 96587.31542476751 84923.12027009444 110535.93551249668 147088.039911999 112172.98501693686 1.3453604940262724 0.6288616852343467 0.7601310129112068 0.652189272941372 0.7759743860913199 0.8610568347644838 0.7570728393941911 0.9854060270911664 1.3112608164059318 1.0 16.775365743299012 1.5153971586292232 4.126334478080342 1.1575846555304534 0.8099778330035609 0.2988081254869781 0.2009683137296283 0.19707592012720368 7.275815585105702 0.12142206709443974 0.04939357077172652 32.76401820931319 -1.5153971586292232 -0.34760682252689257 SEPVKEESSELEQPFAQDTSSVGPDR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ;; 271.44 1.525199999999999e-60 1252730000.0 889026.0 778879.0 744586.0 690358.0 682803.0 871027.0 903918.0 853681.0 1183360.0 937996.0 False True 884239.5827960753 804803.5166727026 849417.2367424676 777757.2520159994 769753.9147595448 810814.953667011 860192.0330379108 917387.0111242831 891736.7842116044 878132.2922212214 1.0069548638957413 0.91649461453805 0.9672998525015867 0.8856948536178701 0.8765808085846208 0.9233403222378576 0.9795699812633801 1.04470251151312 1.0154925312631091 1.0 19.74407877519321 2.0464164760255117 3.5599523457642652 1.0233535180158282 0.9263691326410802 0.5508085888226257 0.03682270941787652 0.167066639714659 4.344177602973733 0.01649187299512681 0.010749053681553903 111.27983576626045 -2.0464164760255117 -0.09698438537474796 SEPVKEESSELEQPFAQDTSSVGPDRK ddPTM_BT-474_Trastuzumab_2h_R1 3 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ;; 285.55 1.0252999999999999e-61 1102150000.0 725450.0 564360.0 528740.0 492703.0 560600.0 745840.0 710960.0 687320.0 1094490.0 752870.0 False True 721544.2578050725 583144.3814371763 603181.9961095325 555079.1492820231 631989.0870634745 694281.8363185104 676568.1486690526 738611.3085402414 824767.6049146157 704821.1920355643 1.0237266784235175 0.827364994166849 0.8557943531287816 0.7875460550198873 0.8966658412160586 0.9850467667031751 0.9599145943882372 1.0479414025663578 1.1701799183033064 1.0 19.42689777722093 2.185115788957164 1.2101951589277666 1.0806551017557193 0.8700335872685618 0.5527304019971533 0.07331946078883744 0.33692809058998685 0.9412470083059578 0.048871206889583164 0.026486192352193363 153.14957253442805 -2.185115788957164 -0.2106215144871575 SEPVS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEPVSPSR 8 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 SEPVS(0.993)PS(0.007)R;S(0.005)EPVS(0.98)PS(0.014)R;SEPVS(0.912)PS(0.088)R;S(0.001)EPVS(0.568)PS(0.431)R 139.02 0.0007137000000000001 1188880000.0 1506690.0 1648970.0 1550800.0 1560970.0 1561650.0 1602080.0 1625580.0 1502150.0 1778420.0 1519160.0 True False 1498578.1484489953 1703854.9696265857 1769139.1602047575 1758588.6419501388 1760516.870875267 1491331.9804906673 1546944.4850813523 1614248.0607631411 1340152.220607088 1422205.9081816894 1.0536998474186827 1.1980367679705315 1.2439402410208147 1.2365218227777717 1.2378776242928937 1.048604827128975 1.0877078179622688 1.1350311874508947 0.9423053391196298 1.0 20.439698924019243 2.7320444910080433 24.907753498388292 1.061671506241101 1.1993737642043298 0.5233229329383317 0.07096006256482032 451.97449299693255 1727659.50280272 0.023236980047279168 0.022389769187517998 539.565895151536 -2.7320444910080433 0.13770225796322877 SEPVS(ph)PSRER ddPTM_BT-474_Trastuzumab_2h_R1 2 SEPVSPSRER 10 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 SEPVS(0.989)PS(0.011)RER;SEPVS(0.992)PS(0.008)RER 96.756 0.0039508 260260000.0 52928.0 72960.0 56830.0 68999.0 69682.0 66744.0 70277.0 64970.0 78971.0 75188.0 True False 52643.041528853646 75388.42949474868 64831.170024784915 77734.2663253731 78555.58966242781 62130.144378476216 66877.43302578913 69818.39131097523 59509.65520718519 70389.43746831457 0.7478826855598986 1.0710190648800735 0.9210354899336753 1.104345610950006 1.1160138862849869 0.882662891097031 0.9501060873784315 0.991887331709443 0.8454344479450222 1.0 16.10307133603477 4.751540308404382 24.32632992954997 0.9875426387786858 0.7478824603844753 0.40903229080097714 0.08620288609580609 1482.4009059738137 2778219.763083182 0.020444227604862086 0.37170082805825994 56433.93172392153 -4.751540308404382 -0.2396601783942105 SEQFINLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEQFINLR 8 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;; 241.03 2.0952e-08 1679180000.0 1209010.0 1546640.0 1386110.0 1364450.0 1236170.0 1388610.0 1549530.0 1213650.0 1641150.0 1471570.0 False True 1202500.8244936387 1598118.9774363765 1581262.2397159003 1537189.2300997886 1393588.9221463676 1292618.6591363396 1474573.3141205662 1304218.725789826 1236710.5727833242 1377653.142725538 0.872861816374636 1.16003000165533 1.147794165799632 1.1158027971094566 1.0115673379072052 0.9382758395767407 1.0703516497652539 0.9466960044888875 0.897693718708198 1.0 20.393781269950193 3.0676016959029404 4.941660764255671 0.9739098838825104 1.0848263557089584 0.24051466621316864 0.08566900723011588 0.27578966511350766 12.999166485165714 0.024955761198918357 0.029880924516453626 1168.4273008212658 -3.0676016959029404 0.11091647182644793 SERPPTILMTEEPSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SERPPTILMTEEPSSPK 17 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 SERPPTILMTEEPS(0.015)S(0.985)PK;SERPPTILMTEEPS(0.028)S(0.972)PK;SERPPTILMTEEPS(0.008)S(0.992)PK 149.73 1.9019e-07 1408970000.0 1041680.0 763350.0 704990.0 634010.0 674930.0 871770.0 824740.0 701130.0 1105770.0 769360.0 True False 1036071.7106215288 788757.6432951805 804246.4641170708 714275.6009934902 760878.3348764717 811506.5918258439 784844.1753872443 753451.8808660005 833267.8000588724 720258.7861177644 1.4384714641330707 1.0951031191811331 1.1166076410563552 0.9916930064032624 1.0563957698838342 1.1266875287976843 1.0896696999943574 1.046084956390673 1.1569005697941332 1.0 19.458155828726802 4.7475264996747715 4.042300003252757 1.0739159996284566 1.4735920383565062 0.8258465559579589 0.050091005838729344 0.09185040140913651 3.157175873051062 0.01162120811487061 0.10851778452498852 55914.764446427405 -4.7475264996747715 0.3996760387280496 SES(ph)APTLHPYSPLSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 S(0.073)ES(0.89)APT(0.037)LHPYSPLSPK;S(0.267)ES(0.726)APT(0.008)LHPYSPLSPK 137.89 6.1758e-06 898640000.0 372490.0 270430.0 255270.0 287430.0 244220.0 323690.0 321730.0 352360.0 526140.0 379840.0 True False 370484.55522752996 279431.0990716129 291209.79715338454 323818.6085291382 275319.9693946515 301314.0721843006 306166.69077204674 378654.8924478252 396479.84691479657 355598.28600261477 1.0418626011735213 0.7858055285158437 0.8189291360961263 0.910630397489478 0.7742443657127949 0.8473439947404161 0.8609903445085656 1.064838913326598 1.1149655735738873 1.0 18.43988884477579 1.7297637371469916 4.791604390243565 1.0690917937671804 0.8552819383445296 0.5839750361028483 0.07591266748498549 0.10740389012410761 5.833383544823648 0.037749802158583874 0.019038340785343607 53.67397222974818 -1.7297637371469916 -0.21380985542265085 SES(ph)ELIDELSEDFDR ddPTM_BT-474_Trastuzumab_2h_R1 8 SESELIDELSEDFDR 15 0 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0Y7F0;E7EQ12;E7EQA0;D6RC54;P20810-5;E9PCH5;P20810-2;P20810-3;A0A0C4DGB5;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 1 SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;S(0.137)ES(0.863)ELIDELSEDFDR;S(0.014)ES(0.986)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR 420.62 4.2869999999999985e-153 1010694100.0 678062.0 746819.0 713603.0 707822.0 762235.0 861230.0 783593.0 718384.0 888172.0 759618.0 True False 674411.3895317708 771676.4189533808 814072.0996515317 797432.1926253753 859301.1091291964 801695.197217354 745687.6129740474 771993.461960037 669293.9114950562 711138.5288983104 0.9483544515251664 1.0851281256675196 1.1447447530549146 1.121345785976117 1.2083455954220597 1.1273404050534757 1.0485827763111923 1.0855739502063018 0.9411582754936939 1.0 19.439771096851967 1.3543659535894697 3.519166567707767 0.9708603739380671 1.103316642421876 0.3599044011749135 0.06591023471162481 0.25449393785613605 5.092116489884577 0.05432497147504611 0.017566803724234057 22.613404619225637 -1.3543659535894697 0.13245626848380898 SES(ph)ELIDELSEDFDRSECK ddPTM_BT-474_Trastuzumab_2h_R1 2 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0Y7F0;E7EQ12;E7EQA0;D6RC54;P20810-5;E9PCH5;P20810-2;P20810-3;A0A0C4DGB5;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 1 S(0.13)ES(0.87)ELIDELSEDFDRSECK;S(0.014)ES(0.986)ELIDELSEDFDRSECK 146.89 6.7139e-08 65387000.0 49741.0 55773.0 47099.0 51987.0 59500.0 70918.0 67048.0 63748.0 109575.0 70914.0 True False 49473.19998274462 57629.37058950957 53730.12980815312 58568.548869652805 67076.97231586992 66015.60558301528 63804.632091766995 68505.19946578488 82571.70947977513 66388.20780747017 0.7452106573839122 0.8680663704108151 0.8093324339161821 0.8822131339876677 1.0103748019587637 0.9943875239781218 0.961083815921109 1.031888067598603 1.2437707268621876 1.0 16.018639385451184 3.3393663020949904 0.5424927418945444 1.0865354439785893 0.7439618698163156 0.6915356617076795 0.07327534055267171 0.7080902250421891 0.4044758220078534 0.05485098829605152 0.12938678289730823 2184.571693974123 -3.3393663020949904 -0.34257357416227363 SES(ph)LDPDSSMDTTLILK ddPTM_BT-474_Trastuzumab_2h_R1 9 SESLDPDSSMDTTLILK 17 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 S(0.009)ES(0.985)LDPDS(0.006)SMDTTLILK;SES(1)LDPDSSMDTTLILK;SES(1)LDPDSSMDTTLILK;S(0.002)ES(0.998)LDPDSSMDTTLILK;S(0.002)ES(0.998)LDPDSSMDTTLILK;S(0.101)ES(0.899)LDPDSSMDTTLILK;S(0.078)ES(0.922)LDPDSSMDTTLILK;S(0.001)ES(0.999)LDPDSSMDTTLILK;SES(0.996)LDPDS(0.003)SMDTTLILK 343.7 5.697399999999997e-73 1399387000.0 3440625.0 2616930.0 2045532.0 2482011.0 2291958.0 2833687.0 2442262.0 2441411.0 3764760.0 3044563.0 True False 3422101.0572893717 2704032.9330824097 2333525.125517129 2796233.338113678 2583825.265800619 2637800.8874716996 2324120.456713147 2623601.4860538584 2836985.343199436 2850256.382758477 1.2006292058461996 0.9486981414862925 0.8187070958363207 0.981046250796388 0.9065238065706896 0.9254609176311491 0.8154075088725402 0.9204791196765036 0.9953439137477882 1.0 21.44266026596932 4.724852857785775 4.21249696844698 0.912685594580356 1.2200212311414709 0.6464061890304722 0.06152079595655292 0.11295209909426297 4.540736165429249 0.014081279502399999 0.10223347609027077 53070.46070828989 -4.724852857785775 0.30733563656111484 SES(ph)LELPQAAPPQIYHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SESLELPQAAPPQIYHEK 18 0 H0YGT9;Q15040;B0QY58;B0QY55;B0QY57;B0QY56 H0YGT9 JOSD1 Josephin-1 1 S(0.022)ES(0.978)LELPQAAPPQIYHEK;S(0.006)ES(0.994)LELPQAAPPQIYHEK 182.02 4.542e-14 936840000.0 1343090.0 1146110.0 1095170.0 1044780.0 867810.0 1350370.0 1299650.0 1278570.0 1737760.0 1398590.0 True False 1335858.952671327 1184257.5785118737 1249360.4166117124 1177049.0408762943 978320.4595871444 1257022.1003290599 1236780.9643548636 1373983.3858469063 1309512.3327909992 1309330.7888068594 1.020260856989884 0.9044754684116457 0.9541976918989313 0.8989699554448665 0.7471912124503302 0.960049294704613 0.9445901485917798 1.0493783523558338 1.0001386540251644 1.0 20.320398194554535 2.043722900355526 2.483363941279928 1.0193307999773662 0.9064425657814797 0.3098601294250485 0.0673567499728668 0.33786208952199503 4.000454688731599 0.03505187510654348 0.020316383426578453 110.59179328468508 -2.043722900355526 -0.11288823419588645 SES(ph)LSNCSIGK ddPTM_BT-474_Trastuzumab_2h_R1 6 SESLSNCSIGK 11 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.001)ES(0.989)LS(0.01)NCSIGK;SES(0.997)LS(0.003)NCSIGK;SES(1)LSNCSIGK;SES(1)LSNCSIGK;SES(0.969)LS(0.03)NCS(0.001)IGK;S(0.002)ES(0.734)LS(0.261)NCS(0.003)IGK 285.36 1.064e-27 5516370000.0 6797890.0 4793940.0 4346740.0 4347000.0 3876990.0 5465750.0 4980500.0 4934570.0 8030010.0 5821250.0 True False 6761290.9155565845 4953503.394902078 4958723.209458622 4897329.754292049 4370701.695779911 5087915.567491547 4739574.187642373 5302812.670638742 6051121.632121269 5449732.841177129 1.2406646550578728 0.908944261904797 0.909902072995481 0.8986366666066218 0.8020029280620388 0.9336082548943022 0.8696892720742319 0.9730408490067097 1.11035197659602 1.0 22.3777540766163 -0.36890296605683215 6.901219614020798 0.9999999999873372 0.9480764729624344 0.0 0.12070156410387832 0.0 0.0 0.11337138542592837 0.026721892008156174 0.4276584267345124 0.36890296605683215 -0.05192352702490288 SES(ph)LSNCSIGKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SESLSNCSIGKK 12 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 SES(0.976)LS(0.024)NCSIGKK 102.65 0.0014279000000000002 541250000.0 247840.0 198310.0 150620.0 200170.0 175280.0 212820.0 202570.0 225770.0 407330.0 252360.0 True False 246505.65697761287 204910.62846907327 171825.9867874906 225511.5014761077 197600.86903404523 198108.25432439294 192770.9152074518 242618.10383683033 306948.9794423613 236254.16874373425 1.0433917771203371 0.867331271057234 0.7272929307498098 0.9545291948719891 0.8363910363350396 0.8385386610438256 0.8159471480757281 1.0269368160864034 1.2992320138710862 1.0 17.849980260586822 1.5385600762966918 4.28168682949067 1.155064060573776 0.8655899226946827 0.5424004869931376 0.1043682639667121 0.1146358383745901 4.641452811033579 0.06067920111604839 0.025660012247468035 34.5589131887479 -1.5385600762966918 -0.2894741378790934 SES(ph)PFRETEPLVSPHQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SESPFRETEPLVSPHQDK 18 1 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 S(0.032)ES(0.968)PFRETEPLVSPHQDK 170.65 9.1918e-12 91662000.0 100030.0 103790.0 93414.0 95588.0 93983.0 123790.0 133550.0 118340.0 164230.0 123690.0 True False 99491.4495943777 107244.58740761995 106565.87923095652 107689.4309991415 105951.17796911599 115232.68867031593 127089.67628945666 127171.13171834403 123757.71706925343 115795.99830366329 0.8591959225868189 0.9261510672103009 0.9202898268686132 0.9299926817569021 0.9149813423713464 0.995135327285921 1.0975308141148095 1.0982342531807585 1.0687564240753065 1.0 16.821225871743106 2.510291531966173 2.756094898576782 1.0775877976436798 0.912304506587332 0.8332210326183527 0.03269022244828815 0.09558194093711235 1.4598582752619407 0.011676914687322569 0.010172464004319592 323.8109508845399 -2.510291531966173 -0.16528329105634787 SES(ph)PIPVAEQGTLMR ddPTM_BT-474_Trastuzumab_2h_R1 6 SESPIPVAEQGTLMR 15 0 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 SES(1)PIPVAEQGTLMR;SES(1)PIPVAEQGTLMR;SES(1)PIPVAEQGTLMR;SES(1)PIPVAEQGTLMR;SES(1)PIPVAEQGTLMR;SES(1)PIPVAEQGTLMR 301.75 2.4523999999999997e-44 3625731000.0 2053154.0 2360598.0 2054957.0 2032416.0 2137677.0 2413622.0 2372332.0 1896564.0 2628889.0 2322230.0 True False 2042100.0469908554 2439169.0774183725 2344277.083593557 2289719.657211693 2409897.4949457482 2246773.9921950474 2257573.2379716863 2038095.2362368538 1981034.5312578264 2174023.2932388694 0.9393183841873772 1.1219608754902013 1.0783127719395513 1.0532176285013297 1.1084966303905017 1.0334636244158146 1.038431025551867 0.9374762646634253 0.9112296714661564 1.0 21.051935967306772 1.8334177121704558 3.1423328930108325 0.9422118407296691 1.061018477871226 0.45948878575775576 0.05133486980016718 0.1931081591277329 3.3798699934589616 0.026238710315113725 0.013471424296400563 68.1424449780739 -1.8334177121704558 0.11880663714155681 SES(ph)PKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 11 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 SES(1)PKEPEQLR;SES(1)PKEPEQLR;SES(1)PKEPEQLR;S(0.009)ES(0.991)PKEPEQLR;S(0.124)ES(0.876)PKEPEQLR;S(0.003)ES(0.997)PKEPEQLR;S(0.058)ES(0.942)PKEPEQLR;S(0.011)ES(0.989)PKEPEQLR;SES(1)PKEPEQLR;S(0.019)ES(0.981)PKEPEQLR;SES(1)PKEPEQLR 221.56 2.1891e-11 56159988000.0 44891436.0 31761659.0 28859165.0 26453597.0 28191541.0 38254478.0 37459818.0 36874494.0 55463704.0 35808659.0 True False 44649745.49648345 32818826.619486704 32922284.583641052 29802619.66785159 31781566.64199521 35610035.977215014 35647743.49293863 39626255.987166524 41795417.32475692 33523319.72528463 1.3319010725183886 0.9789849838389791 0.9820711329734373 0.8890115869214844 0.948043538123233 1.0622467067411734 1.0633715212294943 1.1820504744725153 1.246756516575927 1.0 24.99866168657992 1.9874728942092958 2.5556637456750226 1.1602969644309304 1.0164772052195867 0.12116052386626286 0.12612836257450746 0.47739961265131925 5.8374012717245725 0.06604839389411307 0.036504970988997784 97.15673108756248 -1.9874728942092958 -0.1438197592113437 SES(ph)PKEPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 10 SESPKEPEQLRK 12 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 1 S(0.024)ES(0.976)PKEPEQLRK;S(0.006)ES(0.994)PKEPEQLRK;S(0.002)ES(0.998)PKEPEQLRK;SES(1)PKEPEQLRK;S(0.05)ES(0.95)PKEPEQLRK;S(0.017)ES(0.983)PKEPEQLRK;SES(1)PKEPEQLRK;SES(1)PKEPEQLRK;S(0.01)ES(0.99)PKEPEQLRK;S(0.062)ES(0.938)PKEPEQLRK 160.04 5.4442e-05 40727800000.0 12975280.0 8862480.0 8203570.0 7442760.0 7638860.0 11491830.0 11770320.0 11198830.0 19304020.0 10755210.0 True False 12905422.534169128 9157462.289317703 9358561.349291293 8385012.652876618 8611623.541929515 10697426.840958046 11200944.654611139 12034543.561106484 14546802.931615474 10068803.289801458 1.281723573569149 0.9094886478309852 0.9294611365355048 0.8327715232424566 0.8552777618222119 1.062432796933605 1.1124405087897993 1.1952307751702822 1.444740006625188 1.0 23.263388888721664 2.1428238990553594 1.8590097021181287 1.2310263115951106 0.9528254471330606 0.32377539888423845 0.15494123064174103 0.37035957553371945 2.4955531257357366 0.08275669321149165 0.048047677698055104 138.93891371735018 -2.1428238990553594 -0.27820086446204995 SES(ph)PPAELPSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SESPPAELPSLR 12 0 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3;H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 SES(1)PPAELPSLR;SES(1)PPAELPSLR;SES(1)PPAELPSLR 241.35 3.1751e-16 2583680000.0 1484270.0 2053620.0 1834040.0 1750980.0 1718060.0 1939320.0 1935270.0 1858170.0 2174830.0 1804220.0 True False 1476278.8552379003 2121973.500260497 2092256.890238545 1972653.8884679743 1936844.7572605626 1805259.373068238 1841653.596650665 1996836.0809960735 1638872.2877289464 1689073.1349295455 0.8740171308801727 1.2562946247730171 1.2387011828980496 1.1678913409218705 1.146690878687945 1.068786978927078 1.0903338396460163 1.1822081825245332 0.9702790565059263 1.0 20.687800365856532 2.7532353743405396 18.550243276696364 1.0847692487444254 1.150759820369826 0.07587489719783536 0.11217950546651993 77.69870914194087 98214.51857935188 0.0338924806880906 0.03563081744986021 566.5462566090645 -2.7532353743405396 0.06599057162540056 SES(ph)PPPLSDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SESPPPLSDPK 11 0 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK 257.54 1.6454999999999998e-20 6054820000.0 3478370.0 3000650.0 2612870.0 2360880.0 2428050.0 3450760.0 3391530.0 3060620.0 4612860.0 3204300.0 True False 3459642.84240324 3100524.8213187726 2980739.3845268283 2659767.165933523 2737247.7753201337 3212217.0834152945 3227468.736997234 3289019.0059134485 3476082.4621572015 2999798.830660752 1.1532916164385598 1.0335775818126558 0.9936464252405467 0.8866485108095292 0.9124771125793167 1.0708108325743144 1.0758950580317195 1.0964131902101553 1.1587718571753496 1.0 21.516434324798894 2.539667150636659 10.249173567040259 1.0887078945107407 0.991718560863545 0.23339608093614383 0.07627749793125287 0.920199542577697 148.04613505872098 0.026168213061011088 0.02463723999538599 346.47120829112265 -2.539667150636659 -0.09698933364719564 SES(ph)VEGFLSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 S(0.244)ES(0.756)VEGFLSPSR 112.08 0.0013763 51765000.0 91091.0 61740.0 68412.0 76682.0 55749.0 57560.0 43094.0 61469.0 88712.0 72549.0 True False 90600.57617716148 63794.97857738186 78043.8149522363 86389.93333761742 62848.30469978885 53581.01268166556 41009.37858493328 66056.1289132575 66850.11627989779 67918.86070767615 1.333953120431566 0.9392822245937906 1.1490742650725267 1.2719579279964817 0.9253439183894581 0.7888974008601098 0.6037995655056448 0.9725741601815749 0.9842643940631122 1.0 16.051524638423157 3.0973839876211775 5.7106619342820455 0.8550342011104185 1.1536190589785593 0.4944598523662441 0.14561250304555468 0.18083058943334285 8.805224663631284 0.043078656051609966 0.05177545333613423 1251.3649532952156 -3.0973839876211775 0.2985848578681408 SES(ph)WER ddPTM_BT-474_Trastuzumab_2h_R1 2 SESWER 6 0 O43598;H0Y8X4;O43598-2 O43598 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 SES(1)WER;SES(1)WER 127.46 0.017883 634330000.0 702810.0 712450.0 650270.0 680770.0 692420.0 738110.0 711500.0 678340.0 877610.0 712720.0 True False 699026.1490495313 736163.4675648811 741822.3637518372 766955.4121990796 780595.5827051202 687086.193024048 677082.0268060527 728961.175340725 661334.7748715075 667233.5994097082 1.0476483043838762 1.1033069500938715 1.111788082027219 1.149455622255225 1.1698984934147527 1.0297535879966224 1.0147600891277917 1.092512691185855 0.9911592813320264 1.0 19.347832413820804 2.715465030433149 24.5558926598395 1.0354432565474387 1.117269056952071 0.5599326909264484 0.03976461551839509 545.3529290794462 579833.7529658083 0.013409993946635092 0.012650852488399488 519.3558530805644 -2.715465030433149 0.08182580040463217 SESAPTLHPYSPLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 SESAPTLHPYSPLS(1)PK;SESAPTLHPYS(0.294)PLS(0.706)PK;SESAPTLHPYSPLS(1)PK 254.62 8.9055e-27 2560940000.0 2642520.0 2385110.0 2112310.0 2095640.0 1979040.0 2787400.0 2606370.0 2214160.0 3496850.0 2642690.0 True False 2628292.9659315706 2464496.9445205596 2409704.8874723455 2360947.809129189 2231059.0133109125 2594713.5988338217 2480289.925799706 2379391.862476665 2635098.17288936 2474031.261679261 1.0623523666178751 0.9961462422458519 0.9739993688829729 0.9542918255312116 0.9017909546529215 1.0487796330724806 1.0025297433453597 0.9617468862788908 1.065103021819043 1.0 21.238432299543344 1.245321778925098 24.999551780792547 1.032551514311045 0.9851979390628385 0.1304129011328855 0.04595886704019263 277.7041501254249 1026848.1234865853 0.0324478298265314 0.011257008762956176 17.59226583263226 -1.245321778925098 -0.0473535752482066 SESELIDELSEDFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SESELIDELSEDFDR 15 0 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;E9PDE4;H0Y7F0;E7EQ12;E7EQA0;D6RC54;P20810-5;E9PCH5;P20810-2;P20810-3;A0A0C4DGB5;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 0 ;;; 300.78 6.322199999999998e-44 659549000.0 632783.0 656840.0 620011.0 643862.0 644194.0 723532.0 699498.0 654639.0 785732.0 718054.0 False True 629376.1666368009 678702.5223318347 707303.1595677802 725374.8631833413 726228.2874630167 673515.9358511271 665660.6093981452 703491.4863694865 592098.8768693827 672227.1789630419 0.9362551624402605 1.009632671173429 1.0521787599526182 1.0790620877636687 1.080331635182135 1.0019171448706867 0.9902316214363335 1.0465085441125306 0.8808017518463583 1.0 19.358589348178402 -0.47314876458515964 6.839596912963151 1.000004902965055 1.015430534030807 0.0 0.0598517025313917 0.0 0.0 0.056879702101203286 0.013406674355877191 0.3363963193940658 0.47314876458515964 0.015425631065751899 SESEVEEAAAIIAQRPDNPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SESEVEEAAAIIAQRPDNPR 20 1 Q16643;Q16643-3;Q16643-2;D6R9W4;D6R9Q9 Q16643 DBN1 Drebrin 0 ;; 166.06 1.4364e-11 2757780000.0 1455150.0 1873650.0 1712010.0 1618410.0 1578460.0 1728470.0 1809740.0 1545770.0 1991850.0 1988380.0 False True 1447315.6340823653 1936013.307604655 1953046.126942321 1823300.540060686 1779467.5247345895 1608984.9372807245 1722195.9623218344 1661123.2066610134 1500985.2569225645 1861479.8860622365 0.7775080702827298 1.0400398747794617 1.049190024327248 0.9794897885884145 0.9559423865163886 0.8643579494615768 0.9251757030611583 0.892366992036075 0.8063397666346747 1.0 20.828018596776 2.8805807128117102 5.064331865194763 0.8937828828236856 0.972801872667247 0.11772184060702873 0.08328660361832352 0.4123348244332734 15.435951931192495 0.025076191597872017 0.026793270853969316 759.5925784011263 -2.8805807128117102 0.07901898984356148 SESGGLGVSMVEYVLSS(ph)SPADKLDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01 Q8TB72-3 PUM2 Pumilio homolog 2 1 SESGGLGVSMVEYVLS(0.02)S(0.659)S(0.322)PADKLDSR 151.41 7.1994e-08 235850000.0 182940.0 171000.0 169620.0 171870.0 164400.0 234520.0 233880.0 194070.0 301030.0 244720.0 True False 181955.0713665446 176691.63162831726 193501.02163653038 193628.72437777178 185335.3655248574 218308.18440069846 222566.33089163658 208552.48886749215 226845.19009533827 229101.7600846671 0.7942107092468478 0.7712364652415543 0.8446073114629059 0.845164717661768 0.8089652626691504 0.9528874170151301 0.9714736840493269 0.9103050486841274 0.9901503594363706 1.0 17.805629016692087 2.7363802418929377 23.05421033045469 0.9559679445562083 0.8140867607940909 0.8568474758365497 0.030979115170616196 25.606019446906632 270743.25662988826 0.010166240878798074 0.010029999244460278 544.9795950821588 -2.7363802418929377 -0.14188118376211734 SESGGLGVSMVEYVLSS(ph)SPGDSCLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SESGGLGVSMVEYVLSSSPGDSCLR 25 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 SESGGLGVSMVEYVLS(0.023)S(0.555)S(0.418)PGDS(0.005)CLR;SESGGLGVSMVEYVLS(0.002)S(0.6)S(0.398)PGDSCLR 138.35 6.662300000000001e-06 60256000.0 87806.0 114616.0 96969.0 113874.0 100806.0 115796.0 113775.0 94026.0 113555.0 116265.0 True False 87333.26225216371 118430.924273165 110621.39233034254 128290.43672423565 113643.04657602665 107791.29507446411 108271.26858729267 101042.69757435372 85570.89180904273 108844.86816052551 0.80236453705253 1.0880708137613055 1.016321616258444 1.1786539769153987 1.044082725227107 0.9903204156165858 0.9947301183516811 0.928318434134487 0.7861729565682593 1.0 16.73191386309391 1.7697451277309635 2.184454292576026 0.8864305991824906 1.0302268467402933 0.2033943636758957 0.10137244384758141 0.4000511382899764 3.8093493912427694 0.06453678606489124 0.028283863303933676 58.84981849545559 -1.7697451277309635 0.14379624755780274 SESGGLGVSMVEYVLSSS(ph)PADK ddPTM_BT-474_Trastuzumab_2h_R1 2 SESGGLGVSMVEYVLSSSPADK 22 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01 Q8TB72-3 PUM2 Pumilio homolog 2 1 SESGGLGVSMVEYVLS(0.094)S(0.318)S(0.588)PADK;SESGGLGVSMVEYVLS(0.018)S(0.322)S(0.66)PADK 81.35600000000002 0.0035369 34995000.0 111703.0 83616.0 81383.0 72513.0 78755.0 109073.0 101954.0 104737.0 136413.0 98601.0 True False 111101.60345936997 86399.10801306072 92841.0190062831 81693.13836507456 88783.98243254356 101533.04024022438 97022.09551789782 112553.0067837095 102795.84399055025 92308.19976343679 1.2035940874602262 0.9359851912883187 1.0057721767319892 0.8850041337002994 0.9618211888009416 1.099935222444253 1.0510669232694558 1.2193175370352274 1.1136155211995327 1.0 16.494171188120507 2.635893816543705 4.24242722593083 1.1183127463326492 0.9892924611933788 0.19411815911981878 0.09466415992582834 0.29937617545510026 9.28295736343416 0.0313128007492826 0.0294440655194954 432.40809586798105 -2.635893816543705 -0.12902028513927044 SESGGLGVSMVEYVLSSS(ph)PADKLDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01 Q8TB72-3 PUM2 Pumilio homolog 2 1 SESGGLGVSMVEYVLS(0.005)S(0.384)S(0.612)PADKLDSR;SESGGLGVSMVEYVLS(0.002)S(0.286)S(0.712)PADKLDSR;SESGGLGVSMVEYVLS(0.001)S(0.07)S(0.93)PADKLDSR 189.93 4.8043e-18 611810000.0 245705.0 258052.0 233316.0 207565.0 223257.0 315226.0 331653.0 289438.0 428520.0 321147.0 True False 244382.15158039183 266641.10482427187 266164.8647809733 233842.7077178813 251687.45560208734 293435.16858218756 315609.67735250556 311037.3332963834 322916.98787381395 300651.1235122204 0.8128429680405255 0.8868787906373277 0.8852947618210203 0.777787573138327 0.8371412441831675 0.9759989091484651 1.0497538597745408 1.0345457208435838 1.07405880976423 1.0 18.19773082423133 2.5906597361366464 3.0548189426804973 1.0407938137489432 0.8412374880442061 0.8818768833721287 0.034761549089192594 0.0855226340677563 1.5275682793782464 0.012589934071226782 0.011564642128025118 389.63659204632364 -2.5906597361366464 -0.19955632570473714 SESGGLGVSMVEYVLSSS(ph)PGDSCLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SESGGLGVSMVEYVLSSSPGDSCLR 25 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 SESGGLGVSMVEYVLSS(0.2)S(0.799)PGDS(0.001)CLR;SESGGLGVSMVEYVLS(0.005)S(0.148)S(0.819)PGDS(0.028)CLR;SESGGLGVSMVEYVLS(0.006)S(0.187)S(0.806)PGDS(0.001)CLR;SESGGLGVSMVEYVLS(0.007)S(0.176)S(0.816)PGDSCLR 126.97 8.1308e-05 179644000.0 225657.0 282787.0 265181.0 265234.0 257869.0 277002.0 289365.0 255659.0 282793.0 280392.0 True False 224442.08778484954 292199.3943466487 302516.17980542826 298812.59720494517 290707.08864069055 257853.50373257024 275367.3094683532 274737.57279009715 213102.45438205823 262497.14250433166 0.8550267848387945 1.1131526673355194 1.1524551350132743 1.138346095329454 1.1074676313319998 0.9823097549654858 1.049029741204932 1.046630718220346 0.8118277111475287 1.0 18.001942192387883 1.3544076411884958 7.4072983864806945 0.9071623857121813 1.0628023864311578 0.2929839790490043 0.09267828702980337 0.2541141415298134 14.958889676727136 0.061826518294962274 0.022478269528980598 22.61557536702367 -1.3544076411884958 0.15564000071897643 SESGVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SESGVLK 7 0 A0A0G2JML4;A0A140T9Y3;A0A0G2JNW1;A0A087WYQ2;A0A0G2JN18;A0A140T9M2;A0A0G2JP41;A0A0G2JM93;A0A140T8X9;E9PLW3;A0A140T960;A0A0G2JKA5;A0A0G2JN90;A0A0G2JPA5;A0A0G2JM37;F8VVU2;A0A0G2JMH0;A0A0G2JMA0;A0A0G2JQ19;Q5SRN2-2;Q5SRN2;Q5SRN2-3 A0A0G2JML4 C6orf10 Uncharacterized protein C6orf10 0 82.26299999999998 0.058079 116840000.0 187450.0 184650.0 175590.0 161090.0 144280.0 184360.0 192550.0 194920.0 240820.0 198700.0 False True 186440.79002765278 190795.96362671774 200311.54574435993 181483.97748307025 162653.20278544078 171615.62713675937 183235.6208875691 209465.92018370485 181473.13782267316 186018.79588437142 1.0022685564718077 1.025681102383416 1.076834976766933 0.9756217194088279 0.8743912248875398 0.9225714332837366 0.9850382055019197 1.1260470706084351 0.9755634475533117 1.0 17.505088877270918 -0.09404456445943365 7.193380846184322 0.9999997280091756 1.0016619474926958 0.0 0.06766731205213054 0.0 0.0 0.0735205251383593 0.017328953974898472 0.8052958027706105 0.09404456445943365 0.0016622194835201887 SESHTDLTFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SESHTDLTFSR 11 0 O15226;O15226-2 O15226 NKRF NF-kappa-B-repressing factor 0 ; 142.08 3.7822e-05 423280000.0 158089.0 348330.0 337590.0 440160.0 371040.0 272460.0 265090.0 225710.0 189978.0 245030.0 False True 157237.86638933924 359923.9534800685 385119.7376151173 495884.210869378 418289.74467362004 253625.48150185205 252266.5839578589 242553.62633215636 143160.46747477716 229391.97561926284 0.6854549552784593 1.569034629517548 1.6788718810911074 2.1617330315530743 1.8234715645323332 1.10564234349161 1.0997184329436291 1.05737624726132 0.6240866407305814 1.0 17.807455399631976 2.604922313736452 4.695265044854888 0.9813024012798361 1.6182525738865308 0.40394227376138736 0.36945698564732016 0.24661337370097383 8.362721358004968 0.12871343366635338 0.12041271903085914 402.64500305413566 -2.604922313736452 0.6369501726066946 SESIRPDEFSLEIFER ddPTM_BT-474_Trastuzumab_2h_R1 4 SESIRPDEFSLEIFER 16 1 Q01970;Q01970-2 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 0 ;;; 238.12 8.0364e-20 416189000.0 186395.0 252773.0 216823.0 227154.0 219410.0 252171.0 280614.0 215735.0 278037.0 251233.0 False True 185391.47003043114 261186.39650049468 247349.79374069892 255911.6731093758 247350.5629550423 234739.01231668325 267039.62877042 231834.24118013273 209518.50685492344 235199.09484860755 0.7882320727031858 1.1104906533276184 1.0516613335604565 1.0880640219899675 1.0516646040421898 0.9980438592579599 1.1353769407246548 0.9856935943114887 0.8908134063601982 1.0 17.843522982485503 -0.4085057479318337 6.316954865187785 0.999999995582864 1.0213151479982148 0.0 0.10021408507261825 0.0 0.0 0.0910696308273977 0.0214653178394028 0.3903860156746707 0.4085057479318337 0.021315152415350758 SESPKEPEQLR ddPTM_BT-474_Trastuzumab_2h_R1 10 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ;;;;;;;;; 160.52 2.4971e-05 33112200000.0 7062280.0 7041460.0 6276690.0 6383470.0 6485520.0 8223500.0 8157990.0 7735130.0 10572240.0 8135380.0 False True 7024257.469173068 7275830.739447547 7160393.394032503 7191616.647488073 7311412.529311272 7655028.801036774 7763356.857151801 8312364.678794272 7966853.1127579855 7616173.083350775 0.9222817538808755 0.9553132078041624 0.9401563377919256 0.9442559365160966 0.959985080340976 1.0051017377442406 1.0193251613625713 1.091409634185625 1.046044125516765 1.0 22.86063483468936 2.5191882858966284 1.536390975267078 1.0543973094093753 0.9413831449759874 0.7851291793955728 0.02356944604056064 0.15443337709867844 0.7380671382952101 0.01071515525858786 0.008508916779195465 330.5128019205534 -2.5191882858966284 -0.11301416443338785 SESPKEPEQLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 SESPKEPEQLRK 12 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ; 166.48 2.9139e-05 5724700000.0 7521500.0 7509600.0 7094400.0 7652400.0 7628800.0 10494200.0 10187500.0 9500600.0 16992000.0 10791700.0 False True 7481005.0797172105 7759552.496350939 8093229.8543697605 8621193.055381743 8600282.460559806 9768760.654689634 9694691.70497072 10209583.015069282 12804549.281134719 10102964.466760792 0.7404762339143184 0.7680470936901953 0.8010747618678509 0.8533330077271732 0.8512632592993 0.9669202229533022 0.959588815428055 1.0105531944271673 1.2674051584821726 1.0 23.26827534273011 2.5296936436752806 0.6974012300006449 1.1076305159761148 0.7600144293424963 0.755447240946814 0.07295762632011964 0.34626635590121324 0.3457570755683484 0.05592002826735717 0.046147014319310765 338.60521585809084 -2.5296936436752806 -0.34761608663361854 SESSEKPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SESSEKPAR 9 1 A0A087WVI0;E9PBL8;Q8WTW3 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 0 ; 111.39 0.0023712 82655000.0 276140.0 264890.0 264160.0 240540.0 247510.0 225678.0 277630.0 270100.0 384620.0 304690.0 False True 274653.2929220383 273706.7035206139 301351.43188011914 270992.3393368784 279028.9313932937 210077.41104886925 264199.97625040665 290256.23354000936 289835.5546439527 285244.4233417671 0.9628699825376112 0.9595514622652965 1.0564673915431937 0.9500355385114313 0.9782099440344667 0.7364820969599252 0.9262231077305026 1.0175702302591112 1.016095428784894 1.0 18.121839155882153 1.7161076644548954 6.777177764431649 1.0120829944475538 0.9381207134264564 0.16027215014603025 0.07606738561197421 0.26045151439289926 29.854606703390008 0.04082394532700566 0.021174812112370385 52.01249229370427 -1.7161076644548954 -0.07396228102109736 SESVVSGLDS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SESVVSGLDSPAK 13 0 O14578-4;H7BYJ3;O14578;O14578-2 O14578-4 CIT Citron Rho-interacting kinase 1 SESVVSGLDS(1)PAK;SESVVSGLDS(1)PAK 290.64 1.6574e-40 420640000.0 1154560.0 821070.0 707020.0 638100.0 621010.0 1213930.0 1137620.0 952800.0 1599790.0 1265720.0 True False 1148343.9772436754 848398.8186027044 806562.2704719943 718883.3945741324 700091.9424853513 1130013.8763838466 1082588.9744695728 1023902.774220366 1205543.19058772 1184940.6659625885 0.9691151719489821 0.7159842201157863 0.680677348360546 0.6066830308251311 0.5908244712967383 0.9536459578470775 0.9136229395841773 0.8640962401173032 1.017386967311477 1.0 20.17638338957458 2.7233117427549995 24.73444340668749 0.9320517566660552 0.7051776290190139 0.5566015291254502 0.10510987760366229 579.4235503969912 939852.7699929418 0.035243120138101304 0.033343287373041486 528.8247134668719 -2.7233117427549995 -0.2268741276470413 SETEDSILHQLFIVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SETEDSILHQLFIVR 15 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 0 ;;; 193.16 1.0446e-07 183162000.0 219817.0 272271.0 229687.0 260121.0 249506.0 283203.0 279110.0 218194.0 304343.0 272996.0 False True 218633.52969596442 281333.37564370496 262024.93312480653 293052.29192919296 281279.11016207485 263625.8431981537 265608.382996258 234476.74424668183 229341.7456372637 255573.16155636535 0.8554635720141761 1.1007938937346453 1.0252443235007611 1.1466473636926144 1.1005815651736193 1.0315083226765671 1.0392655526847228 0.9174544886434376 0.8973624000291734 1.0 17.963376817284722 1.779451958445613 5.14322908522138 0.9307378437691238 1.0508688043594523 0.27279035753552994 0.07716726474512134 0.22487400843818264 12.287077990716524 0.036901779734127955 0.020072513403094818 60.179968827612356 -1.779451958445613 0.12013096059032846 SETELKDTYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SETELKDTYAR 11 1 Q13200;Q13200-3;Q13200-2;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;;; 158.01 2.7652e-05 3077550000.0 3733880.0 3955160.0 3524150.0 3555850.0 3529480.0 4216580.0 4485590.0 3864580.0 5644040.0 4238830.0 False True 3713777.2049530717 4086805.109655286 4020319.687539071 4006020.245410484 3978938.357133054 3925097.7493616664 4268604.875082163 4152974.5835396154 4253141.96826128 3968304.240355057 0.9358599996407503 1.0298618407568534 1.0131077266342259 1.0095043128679195 1.0026797634792854 0.9891121022037552 1.0756748012597535 1.046536336933691 1.0717781981052787 1.0 21.92009120725293 2.246884255595793 24.997434737321612 1.0525818764886448 0.9997968533736546 0.4100548593809332 0.03014780551279316 167.03620313795474 501641.2001789552 0.009931996106020071 0.008180466019873593 176.5567214294325 -2.246884255595793 -0.052785023114990115 SETITADVNHNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SETITADVNHNLK 13 0 Q16222;Q16222-3 Q16222 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 ; 141.38 3.9819e-05 504150000.0 246540.0 219940.0 210738.0 207114.0 213970.0 271570.0 253780.0 218660.0 296720.0 250090.0 False True 245212.65603316913 227260.56994346212 240408.07863246746 233334.61116412331 241217.8112004485 252797.00510701758 241503.69186625438 234977.51953298188 223597.3318442971 234129.04208717894 1.0473397654865182 0.970663732775367 1.0268187000182167 0.9966068672387947 1.0302771883832764 1.0797336496720793 1.03149822727387 1.003623973507255 0.9550174974065784 1.0 17.83694437632121 1.49002187093509 4.363070538990196 0.977330209240386 1.0248159600918407 0.30936299231985454 0.02894474857268888 0.22698586736225745 9.133937956974927 0.019193216193321202 0.007675636121938035 30.90451062749537 -1.49002187093509 0.04748575085145468 SETS(ph)PVAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SETSPVAPR 9 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8T6;H0Y8H7 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 S(0.001)ET(0.173)S(0.826)PVAPR 87.895 0.013794999999999998 173870000.0 861100.0 890680.0 935450.0 875560.0 823010.0 1118900.0 1030400.0 1033200.0 1265800.0 1072900.0 True False 856463.9332772031 920325.7453725698 1067153.228922841 986405.8062268106 927815.4451375487 1041553.0766072912 980555.615489749 1110302.6304832923 953860.5508510087 1004426.603444097 0.8526894153743619 0.9162697823980844 1.0624501832823419 0.9820586221477063 0.9237264743448105 1.0369628532696074 0.9762342137568875 1.105409421331688 0.949656796803568 1.0 19.93794071506194 4.427862199839983 4.932015750729308 1.0090904138473111 0.8656945263851933 0.48736663848255335 0.05090174675658065 0.1382584855280971 7.229456682428347 0.01272597532300783 0.039031860624923906 26783.18368685322 -4.427862199839983 -0.14339588746211784 SEVELAAALSDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SEVELAAALSDKR 13 1 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 162.13 6.5703e-05 612200000.0 282890.0 313900.0 290770.0 277640.0 281890.0 361320.0 309150.0 324490.0 416310.0 379520.0 False True 281366.95167203347 324347.97174344276 331707.88858185307 312789.1955329296 317787.0206070683 336342.798855792 294195.233432314 348705.0915268335 313715.9787681965 355298.70867658075 0.7919166177666987 0.9128881243379028 0.93360285439089 0.8803555653157568 0.8944221097531251 0.9466479630860583 0.8280222422652044 0.9814420458371289 0.8829640274706544 1.0 18.438672919679888 SEVLSESSELLQQELEELRK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEVLSESSELLQQELEELRK 20 1 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 ; 231.42 1.61e-25 164794000.0 106816.0 111958.0 87865.0 101470.0 98532.0 122824.0 115045.0 115265.0 159303.0 133599.0 False True 106240.9145243734 115684.4543499597 100235.62826372901 114316.09159604643 111079.46615508066 114333.46597659634 109479.83383542151 123866.65960381042 120044.910200836 125072.59744014166 0.8494339823334932 0.9249384494899051 0.8014195780310763 0.9139979015048186 0.8881199273745158 0.9141368158705991 0.875330296772779 0.9903580971290823 0.9598018483488212 1.0 16.93240621383931 1.7614590555457246 1.0393609468794256 0.9984989949425377 0.8753473991392375 0.5928849877285051 0.037423921286505124 0.3266204112090694 0.656415079008181 0.030124862737713014 0.012252899155572112 57.73764362002926 -1.7614590555457246 -0.12315159580330015 SEVQQPVHPKPLS(ph)PDSR ddPTM_BT-474_Trastuzumab_2h_R1 8 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 SEVQQPVHPKPLS(0.917)PDS(0.083)R;SEVQQPVHPKPLS(0.846)PDS(0.154)R;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(0.997)PDS(0.003)R;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(0.999)PDS(0.001)R;SEVQQPVHPKPLS(0.997)PDS(0.003)R;SEVQQPVHPKPLS(0.996)PDS(0.004)R 214.87 3.5109000000000003e-15 19231280000.0 8835890.0 7311000.0 6995200.0 6582550.0 6853490.0 9612150.0 8997860.0 8307800.0 12167300.0 9195780.0 True False 8788318.549999665 7554342.215407166 7980063.356631623 7415900.15507595 7726241.3276822185 8947684.695067264 8562599.13663683 8927770.222153613 9168831.948466951 8608897.447496649 1.0208413567006993 0.8775040313209755 0.92695532793832 0.8614227548072829 0.8974716419614112 1.0393531517406018 0.9946220394490493 1.0370399086063788 1.0650413719509604 1.0 23.037397050978505 2.737751025900487 24.998816606694046 1.027372350127466 0.9121370781336512 0.6087771792514043 0.04415931716973199 47.40016975678612 1463616.1870558122 0.013533735154854303 0.013470067017028846 546.7024572397869 -2.737751025900487 -0.11523527199381489 SEVQQPVHPKPLSPDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;;; 159.88 1.8983e-09 3455120000.0 2201700.0 2388200.0 2319240.0 2222270.0 2288020.0 2734550.0 2692190.0 2477440.0 3109770.0 2715180.0 False True 2189846.291831867 2467689.793302613 2645768.8328045416 2503609.154145524 2579385.7848429694 2545516.9949383033 2561958.4845354715 2662319.1529854145 2343408.8522830973 2541894.887817448 0.8615015130354736 0.9708071742578821 1.040864768045654 0.9849381129584011 1.0147491925040661 1.001424963376029 1.0078931653760281 1.0473757847915444 0.9219141450397357 1.0 21.277472942719815 4.6893869659694065 3.161375404246709 1.006359243230261 0.8476013476341897 0.6214221941560543 0.03275986175333099 0.1744311555437665 2.799943008718291 0.0075407866300054435 0.06384221122965304 48908.79534140084 -4.6893869659694065 -0.15875789559607134 SEWLDPS(ph)QKSPLHVGETR ddPTM_BT-474_Trastuzumab_2h_R1 1 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 SEWLDPS(0.785)QKS(0.215)PLHVGETR 169.9 1.0348e-11 1134100000.0 288660.0 288850.0 253930.0 227820.0 260190.0 331260.0 361830.0 280580.0 379000.0 339660.0 True False 287105.8866331408 298464.1976364875 289681.13680087356 256661.98864108932 293323.65423304535 308360.7759021637 344326.9005751705 301518.3043563707 285600.5283398103 317982.6080024438 0.9028980812401359 0.9386179939570585 0.9109967951412212 0.8071573167269475 0.9224518789744346 0.9697410114322789 1.082848218455156 0.9482226284339847 0.8981639912130521 1.0 18.278588334176643 2.8067935955985037 3.8769696499258846 0.9832704660311943 0.8924604924250048 0.3825863875367175 0.05378103707247301 0.25697661126581917 7.6221531951840955 0.017861836789096003 0.018732183455119504 640.9049053559144 -2.8067935955985037 -0.09080997360618948 SEWLDPSQKS(ph)PLHVGETR ddPTM_BT-474_Trastuzumab_2h_R1 3 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 SEWLDPS(0.017)QKS(0.983)PLHVGETR;SEWLDPS(0.205)QKS(0.795)PLHVGETR;SEWLDPS(0.066)QKS(0.934)PLHVGETR 195.71 1.2317e-15 3760400000.0 1185060.0 1124960.0 1129740.0 1030550.0 1019490.0 1377430.0 1396270.0 1268450.0 1649490.0 1302160.0 True False 1178679.7686325435 1162403.613547319 1288797.572123887 1161017.524335327 1149316.0085093481 1282211.5062214492 1328727.085830622 1363108.1800585901 1242995.2915335991 1219055.0339647364 0.9668798666120263 0.9535284143545434 1.0572103278490446 0.9523913949638075 0.9427925536482338 1.0518077285250271 1.0899648078308646 1.118167877643185 1.0196383730855874 1.0 20.217331826894927 2.596979448005946 5.121735541769835 1.0728527898400058 0.9771103322125654 0.4432407554116967 0.04406397893163903 0.18574047162596594 7.040741017325743 0.014614879315093171 0.013681861252344801 395.3479106888832 -2.596979448005946 -0.09574245762744038 SEWMNHINK ddPTM_BT-474_Trastuzumab_2h_R1 2 SEWMNHINK 9 0 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 0 ; 145.17 9.7804e-05 652390000.0 665870.0 688470.0 683920.0 621600.0 527450.0 624870.0 723760.0 556420.0 926860.0 653680.0 False True 662285.029905112 711385.3077610965 780209.9912607934 700294.4962659167 594617.6310589185 581674.2076857606 688748.9637683048 597942.8858435096 698447.7722876967 611961.5827563964 1.0822330168538503 1.1624672656033013 1.274932958612488 1.1443438869342932 0.9716584305515434 0.9505077182554247 1.1254774534473926 0.9770921944973346 1.1413261746623855 1.0 19.22308156182126 3.3661419816346663 5.896358671643906 1.0268590671726925 1.177826868672605 0.46231396136414493 0.07339299050524457 0.17677898597905164 8.50632534852784 0.020177706780515007 0.02743369107563503 2323.496280749542 -3.3661419816346663 0.1509678014999125 SEWNTVER ddPTM_BT-474_Trastuzumab_2h_R1 1 SEWNTVER 8 0 B5MCF9;O00541-2;O00541 B5MCF9 PES1 Pescadillo homolog 0 138.26 0.0016587 317910000.0 241230.0 225850.0 197410.0 189800.0 161440.0 192430.0 201510.0 210520.0 256020.0 236290.0 False True 239931.24448317286 233367.28072079198 225203.61208151994 213828.6605393675 181998.42707015225 179127.76703149593 191762.1914570454 226230.07139889945 192927.30149223813 221209.7699019534 1.084632223023049 1.0549591947237553 1.018054546963892 0.966632986572621 0.8227413606135897 0.8097642663381937 0.8668793948026797 1.0226947548436545 0.8721463865621718 1.0 17.75505557916782 3.728906444117082 2.3132464576372804 0.9026108736147433 1.0637995404761966 0.5220692575777298 0.06581463515438794 0.2696622437909434 2.8207738229112174 0.020402026307293736 0.039924639574239904 5356.812484242253 -3.728906444117082 0.16118866686145328 SEYSELDEDESQAPYDPNGKPER ddPTM_BT-474_Trastuzumab_2h_R1 1 SEYSELDEDESQAPYDPNGKPER 23 1 P19387 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 0 126.32 4.609e-05 169010000.0 59109.0 67759.0 75800.0 65214.0 61962.0 71771.0 58783.0 60183.0 63293.0 73635.0 False True 58790.76371162727 70014.31735381961 86471.981134589 73470.08571345796 69852.49342245261 66809.63970076125 55939.441717133086 64674.16106308177 47695.288232748375 68935.55125790476 0.8528366371029171 1.015648907947061 1.254388766850883 1.0657793311696078 1.01330144095196 0.9691608826164317 0.8114744960528414 0.9381829822629532 0.6918823069145937 1.0 16.07296057722109 2.554365487975453 2.1930260317064962 0.8618232995887131 1.055683010178068 0.331383924544962 0.11887941053189104 0.3577482815317051 3.4317410028684017 0.046094860263800295 0.04035831143563253 358.3979261494753 -2.554365487975453 0.19385971058935503 SFAGAVSPQEEEEFRR ddPTM_BT-474_Trastuzumab_2h_R1 5 SFAGAVSPQEEEEFRR 16 1 P33992;B1AHB1 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 ;;;; 276.22 4.389199999999999e-35 3294150000.0 1023656.0 1228021.0 1175952.0 1174136.0 1153419.0 1322283.0 1346087.0 1083547.0 1501488.0 1352607.0 False True 1018144.7498348727 1268894.9366306306 1341515.8200419827 1322781.4972131231 1300300.072799972 1230876.688529375 1280971.6292582967 1164406.7792801806 1131466.4013084043 1266282.4632348858 0.8040423676356437 1.0020631047744837 1.0594127763681598 1.044618033984221 1.0268641559468366 0.9720395916918394 1.0116002285824013 0.9195474257027533 0.8935339737849041 1.0 20.27216782468633 -0.6356778069102816 7.666819151224359 1.0000059336346132 0.9756230984815452 0.009658328059164556 0.07465653304525761 0.0 0.0 0.07316040849012287 0.01724407365258125 0.2313780694294744 0.6356778069102816 -0.02438283515306805 SFAHFDVQSMLFDLNEAAANR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFAHFDVQSMLFDLNEAAANR 21 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 0 97.57 0.0010035 0.0 50838.0 69291.0 58737.0 63118.0 67906.0 65705.0 67824.0 66525.0 91957.0 75075.0 False True 50564.293856632816 71597.30904770597 67006.65904884374 71108.73232836567 76553.42658960455 61162.9680029333 64543.09400715907 71489.43330710522 69295.42951067009 70283.64922505878 0.7194318225383882 1.018690831183803 0.9533747861366499 1.0117393321548354 1.0892067704747233 0.8702303975008514 0.9183230341452876 1.0171559686405205 0.9859395503038799 1.0 16.100901479578397 4.743219510881226 24.996382828325203 0.9834972893096564 0.7194317158095934 0.6605019799458169 0.057101966021794646 296.8778170822659 1592785.4267335762 0.013803417106675119 0.11132885220839367 55362.98665634985 -4.743219510881226 -0.264065573500063 SFANDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFANDDR 7 0 Q96SI9;Q5JPA5;E9PKQ0 Q96SI9 STRBP;DKFZp434P151 Spermatid perinuclear RNA-binding protein 0 120.62 0.01051 311470000.0 427340.0 492610.0 458420.0 481960.0 471270.0 455740.0 478480.0 448320.0 589370.0 489330.0 False True 425039.24892193713 509006.22606096667 522961.55134193046 542976.0865835283 531283.441063866 424235.76649656467 455334.09442889655 481775.91492283234 444127.66065338807 458100.5404635103 0.9278296168170388 1.1111233912667937 1.141586846443781 1.1852771141333738 1.159752923509561 0.9260756734041812 0.9939610504894523 1.0516816121530157 0.9694982245688155 1.0 18.8053047393743 2.745600341224563 24.975874285812537 0.996877515562162 1.1119276126370328 0.39570072907684317 0.07157099825179793 611.3969897189289 2169145.8644597307 0.023021962547995874 0.023963418142137562 556.6732355281533 -2.745600341224563 0.1150500970748708 SFATASHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFATASHR 8 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 95.605 0.0095314 65958000.0 231250.0 297170.0 302790.0 231810.0 216380.0 155510.0 276760.0 250520.0 339750.0 285420.0 False True 230004.97569429033 307061.1238069418 345420.20010214037 261157.12223198544 243934.7104152598 144759.95973116436 263372.06147412973 269215.0745147839 256023.1649167562 267204.25123964436 0.8607833693783878 1.1491625690174796 1.2927197022488515 0.9773688892313487 0.9129147806727256 0.5417576968164896 0.9856582006171837 1.00752541647751 0.9581552828182351 1.0 18.027583435817498 3.4964982816854264 12.668088085331243 0.9019541179511954 1.1106224465244539 0.23612489316469465 0.16057684132019884 2.0684563054599443 1348.3884584932946 0.04519196928076761 0.06762782812089833 3136.8827188518108 -3.4964982816854264 0.20866832857325845 SFCPIELNINGS(ph)PGAESDLATFCTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFCPIELNINGSPGAESDLATFCTSK 26 0 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 SFCPIELNINGS(1)PGAESDLATFCTSK 193.97 1.3733e-18 39712000.0 23353.0 25543.0 23421.0 22588.0 22332.0 28700.0 28913.0 25007.0 31677.0 25780.0 True False 23227.270042762208 26393.183313930444 26718.473221018594 25447.638484000196 25175.84782786567 26716.03655253305 27514.367731614064 26873.14932297303 23870.62780005325 24134.698328631577 0.9624015070122975 1.0935783391425105 1.1070564403666825 1.0544005206732188 1.043139113862424 1.1069554791509106 1.1400336294642268 1.1134653086213537 0.9890584698850347 1.0 14.558821173495536 2.7475639864124006 23.88869210313858 1.0856806880038763 1.0575979491916492 0.0 0.05820502857213365 1280.907247564329 3398639.5135358446 0.017925864058200312 0.01872072295913623 559.1959101608605 -2.7475639864124006 -0.028082738812227115 SFDFEIETK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFDFEIETK 9 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 145.72 0.00022448 88271000.0 185970.0 184230.0 179230.0 153180.0 149730.0 208430.0 201680.0 189400.0 250630.0 211150.0 False True 184968.75818320934 190361.98418061336 204464.02610491274 172572.57229410094 168797.22798075978 194021.72469144486 191923.96790758226 203533.9897537126 188865.59476993847 197674.22622538998 0.9357252167629899 0.9630086218906498 1.034348432818859 0.8730150388818626 0.8539162196506874 0.9815226213164456 0.9709104296113383 1.0296435384633364 0.9554386445635668 1.0 17.59276525182255 2.5026022569525983 24.872343282973038 0.9924984519985397 0.9342925735283323 0.239702481828852 0.04932406725139621 1091.540133083248 1065466.3175132568 0.017165455344924887 0.016121494920230774 318.1282650123721 -2.5026022569525983 -0.05820587847020742 SFDFIHLDPFGTSVNYLDSAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFDFIHLDPFGTSVNYLDSAFR 22 0 Q7Z2T5-2;Q7Z2T5 Q7Z2T5-2 TRMT1L TRMT1-like protein 0 ; 208.46 6.863899999999999e-23 231230000.0 256950.0 392030.0 395130.0 383730.0 360750.0 365940.0 444000.0 329170.0 412840.0 396390.0 False True 255566.609749829 405078.48156286095 450760.8694684724 432310.1786552763 406689.3741672288 340643.42913010216 422522.02375528775 353734.33689139166 311101.1137725789 371092.05083344766 0.6886879122736358 1.0915849063677923 1.2146874837552946 1.1649674998004858 1.0959258578938351 0.9179486016071755 1.1385908774017979 0.953225314573374 0.8383394714973463 1.0 18.501417571818266 1.5610007691960661 6.091771375174767 0.9121974318620152 1.0546580686251712 0.11286710327870864 0.14621592356594199 0.2605981683753407 19.63486381968579 0.08136157101744912 0.03751891963485197 36.3915680672035 -1.5610007691960661 0.142460636763156 SFDWGYEER ddPTM_BT-474_Trastuzumab_2h_R1 5 SFDWGYEER 9 0 P18615;P18615-3;A0A0A0MT02;E9PD43;A0A0A0MSN9;A0A0G2JI50 P18615 NELFE Negative elongation factor E 0 ;;;; 148.14 0.00021104 1103410000.0 1040640.0 1314590.0 1189100.0 1281150.0 1147210.0 1224070.0 1250270.0 1132540.0 1365180.0 1194490.0 False True 1035037.3098659721 1358345.3334635654 1356514.9441575166 1443343.458640732 1293300.3934536004 1139452.9220508407 1189789.663604784 1217055.8857215913 1028749.6814747818 1118256.6255456596 0.9255812004341311 1.2146991150629252 1.2130622910421813 1.290708613451268 1.1565327348921606 1.0189547694339287 1.0639683561223878 1.0883511511749122 0.9199584942971366 1.0 20.092819875499057 2.7790415013767866 5.773630173118687 1.032700317575117 1.1743053923035942 0.333333103418883 0.09837802864546451 0.24588065223453853 22.363447988954384 0.030747894846425816 0.03217885183638385 601.231188662065 -2.7790415013767866 0.14160507472847716 SFEAPATINSASLHPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFEAPATINSASLHPEK 17 0 Q9Y3F4;Q9Y3F4-2 Q9Y3F4 STRAP Serine-threonine kinase receptor-associated protein 0 ; 243.09 1.9405e-20 859440000.0 425370.0 515330.0 512830.0 490950.0 504440.0 631480.0 539060.0 560440.0 694110.0 598940.0 False True 423079.8551830496 532482.4475264372 585032.0064017315 553104.219661763 568677.4439498731 587827.2739440266 512983.60839082283 602262.8786566564 523055.89109748264 560715.1364216682 0.7545361765744909 0.9496487840948893 1.0433676004098034 0.9864264110855363 1.014200272136433 1.0483527833676485 0.9148738371226163 1.0740977718207048 0.9328371166069875 1.0 19.096908490104653 4.707338193655138 3.0187906023373103 1.0048959135876623 0.7229844881059527 0.7115121805075588 0.0470414983122244 0.15917235010595682 2.230958924703333 0.010479107574783143 0.10366637103903886 50972.76514947631 -4.707338193655138 -0.28191142548170955 SFEEEFGTASDKER ddPTM_BT-474_Trastuzumab_2h_R1 4 SFEEEFGTASDKER 14 1 Q5JY65;Q9BZJ0-2;Q9BZJ0-3;Q9BZJ0 Q5JY65 CRNKL1 Crooked neck-like protein 1 0 ;;; 166.64 3.4414e-06 705960000.0 525864.0 690803.0 493862.0 493516.0 463130.0 598069.0 591298.0 578792.0 1008630.0 646941.0 False True 523032.8066529827 713795.9602557678 563393.4768745431 555995.0749986642 522106.86031342554 556725.8977329924 562694.6567622845 621984.3980862236 760066.65144956 605652.6715059441 0.8635854034168979 1.178556611466647 0.9302253641079065 0.9180097787997744 0.8620565629062884 0.9192164485111637 0.9290715342890417 1.0269654991196042 1.2549546748628522 1.0 19.208131151385423 1.4905581356114086 4.705798457515998 1.1331883089982597 0.9480444197567327 0.34208491590909995 0.10163923261448636 0.18245639774322644 8.718300557224737 0.062447731867471955 0.025587621462908668 30.942694934273007 -1.4905581356114086 -0.18514388924152703 SFEEKVENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFEEKVENLK 10 1 H0YC42;P55327-2;P55327-4;P55327-3 H0YC42;P55327-2 0 ; 104.07 0.0024903000000000004 1021670000.0 1438390.0 1549040.0 1493300.0 1461150.0 1416490.0 1955410.0 2189330.0 1802600.0 3036600.0 2098450.0 False True 1430645.8680601513 1600598.8599855462 1703543.6600037175 1646131.4401849143 1596871.605305995 1820237.109240023 2083423.7438472165 1937119.1654173308 2288270.6183553287 1964525.1244265698 0.7282400465495427 0.8147510256213949 0.8671529006283232 0.8379284233717336 0.8128537453915791 0.9265532349815768 1.060522829635662 0.9860495757124824 1.1647958022543783 1.0 20.905749187949908 2.4762127879891227 2.2316389018269738 1.0483790139021492 0.8149537804892663 0.8017158588444171 0.05620820786817664 0.1359280151521682 1.3708335082895173 0.022086899335337588 0.018315962650967417 299.3731093150728 -2.4762127879891227 -0.2334252334128829 SFEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFEELR 6 0 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;H3BN59;H3BTB3;H3BMQ5 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 ; 133.82 0.033265 1380240000.0 792330.0 1062140.0 993340.0 1031710.0 977460.0 1064750.0 969060.0 822030.0 990790.0 955250.0 False True 788064.183316138 1097492.6878228108 1133193.6377339389 1162324.3802163908 1101933.7371406762 991146.3386519019 922182.8656313037 883374.052783761 746623.0804058069 894285.12716933 0.8812225087658431 1.2272290508695938 1.2671502670751364 1.2997246011408936 1.2321950837185607 1.108311329954872 1.0311955746712216 0.9877991100890768 0.8348825869094837 1.0 19.770375357266122 2.1149366375521255 1.5914333594619199 0.932369839254323 1.1934990369253757 0.4494566595535153 0.11621912346438336 0.3485145294488018 1.687399933855552 0.07124045707987438 0.03835817134307502 130.29766636401257 -2.1149366375521255 0.2611291976710527 SFEHMK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFEHMK 6 0 Q96EK6;G3V5E4;G3V4W4 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase 0 74.717 0.07959 78521000.0 174230.0 237860.0 242690.0 189050.0 154410.0 196060.0 220330.0 163100.0 305540.0 208370.0 False True 173291.96503877282 245777.02631059368 276858.6425007048 212983.7106162667 174073.19824022657 182506.83367559675 209671.79615766325 175271.35020501853 230243.76102624202 195071.64820546782 0.8883503401593522 1.2599320740434723 1.4192664338853138 1.0918229920933062 0.8923551927796104 0.9355887201166382 1.0748450535303684 0.8984973050538141 1.180303560995843 1.0 17.57364458572226 3.478876039208031 24.92481126317794 0.9884602805973955 1.2061390056486143 0.25575658626217723 0.14622957837643522 75.09790480088289 1066693.4766575028 0.03967299113729156 0.054537900048030497 3012.1461437817807 -3.478876039208031 0.21767872505121877 SFELPPYT(ph)PPPILS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFELPPYTPPPILSPVR 17 0 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 2 SFELPPY(0.027)T(0.973)PPPILS(1)PVR;SFELPPY(0.053)T(0.95)PPPILS(0.997)PVR 124.68 0.00026241 334040000.0 226320.0 352910.0 334850.0 320810.0 326100.0 335270.0 294700.0 253890.0 278000.0 274360.0 True False 225101.51826651563 364656.39601139986 381993.9694316246 361424.5131066093 367626.9020538692 312093.57404068863 280444.2351366744 272836.5610272973 209490.62500914856 256850.1099085862 0.8763925323864179 1.4197245083569647 1.487225251986762 1.4071417498526337 1.4312896427597748 1.2150805547708887 1.0918595099549908 1.0622403904144746 0.8156143093873192 1.0 17.97056716546464 2.049634840416955 1.4251867911982223 0.9388143617310937 1.3412294746442515 0.46908664474533446 0.17038477965474416 0.3624820310194284 1.3800568764454155 0.11425736143016152 0.05646755747891412 112.10754453310963 -2.049634840416955 0.4024151129131578 SFELPPYTPPPILS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFELPPYTPPPILSPVR 17 0 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 SFELPPYTPPPILS(1)PVR;SFELPPYTPPPILS(1)PVR;SFELPPYTPPPILS(1)PVR 175.39 1.0335e-13 269040000.0 383134.0 524902.0 489543.0 523723.0 521795.0 484357.0 479055.0 411658.0 472815.0 426333.0 True False 381071.2491141891 542373.0457600398 558466.3992159652 590026.2781014713 588242.5003287286 450874.5406437366 455881.2794821836 442378.01031696826 356296.0786464054 399124.0629379554 0.9547689164845654 1.358908410000709 1.3992300917792067 1.47830294610223 1.4738337147569378 1.129660129546802 1.1422044467237529 1.108372186484123 0.892695058332758 1.0 18.60647773508191 2.055804540383343 1.261961478525575 0.9830289879880916 1.3370545688399726 0.4635627205167985 0.15156920381142266 0.42093561956923387 1.2509290968281528 0.11092668329865163 0.05406530609631152 113.71153977567532 -2.055804540383343 0.35402558085188107 SFEVNLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SFEVNLR 7 0 Q7Z4W1;J3KS22;J3QS36;J3QL34;J3QS45;J3KRZ4;J3KSZ5 Q7Z4W1 DCXR L-xylulose reductase 0 ;;;;; 193.98 0.0011370999999999998 3575070000.0 2674540.0 3364740.0 3128590.0 3212410.0 3128510.0 3348810.0 3199520.0 2834360.0 3452500.0 3147460.0 False True 2660140.573809326 3476733.336871714 3569068.2778082346 3619100.7766241794 3526907.2043684395 3117314.6469508065 3044746.994246664 3045874.3357884507 2601677.636129802 2946586.408123922 0.9027872274422881 1.1799190165562916 1.211255257259075 1.2282350745412025 1.1969468109418195 1.0579410257089954 1.03331332346206 1.0336959158539474 0.882946323568457 1.0 21.490613142910277 2.1305979102885244 1.3706319509570108 0.9667207293610347 1.1512151490557931 0.3798565691307323 0.09442498982855875 0.4570114877618095 1.6323183916642316 0.06240934638272836 0.032856522903677764 135.08213318362297 -2.1305979102885244 0.18449441969475844 SFFDNISCDDNR ddPTM_BT-474_Trastuzumab_2h_R1 7 SFFDNISCDDNR 12 0 Q8ND56-2;Q8ND56;Q8ND56-3;A0A140TA76;A0A0G2JQ95;A0A096LP11 Q8ND56-2 LSM14A Protein LSM14 homolog A 0 ;;;;;; 262.23 4.8919e-21 2386187000.0 2031344.0 2374090.0 2237410.0 2166100.0 2098190.0 2413370.0 2395680.0 2170640.0 2701370.0 2358150.0 False True 2020407.4696075357 2453110.150482287 2552417.880083655 2440328.037904766 2365382.0595535343 2246539.4123619027 2279791.8060136666 2332624.179086582 2035653.5600034653 2207650.84808621 0.9151843333192866 1.1111857441627888 1.156169184224181 1.10539582833955 1.0714475351045931 1.017615359924059 1.032677702631281 1.0566091921232517 0.922090357616175 1.0 21.074080589463154 1.7396542797654344 0.9594990103947423 0.9752140442752948 1.0760374044232455 0.2117163021190377 0.0662786745697664 0.8179117154134745 1.4110202833752057 0.058651316904924956 0.024220517600129953 54.91035857776943 -1.7396542797654344 0.10082336014795068 SFFQDEHVADSENAENRPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFFQDEHVADSENAENRPFR 20 1 Q5JSZ5;A0A494C0D3;H0Y412 Q5JSZ5 PRRC2B Protein PRRC2B 0 70.917 0.010835 86668000.0 53916.0 70079.0 58450.0 58749.0 55829.0 66764.0 71001.0 38176.0 74678.0 56724.0 False True 53625.722246630736 72411.53715134991 66679.25194349237 66186.61737632938 62938.49222559167 62148.761825551126 67566.41037984053 41024.88697380004 56274.607533932394 53103.82575614032 1.0098278510645735 1.3635841885267008 1.2556393253038336 1.2463625065408082 1.1851969482314404 1.1703255074492434 1.2723454368450642 0.7725410813562033 1.059709102548519 1.0 15.696528180326329 1.7516443160140418 24.99999999999791 0.9291653393886522 1.2204215991297758 0.5607948231387482 0.10945106881496453 2.4700452220995697 4726.856141860457 0.04706603310750406 0.026100657915045258 56.447448499940165 -1.7516443160140418 0.29125625974112357 SFGEKS(ph)YLNVHR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFGEKSYLNVHR 12 1 Q6ZN11-3;Q6ZN11-2;Q6ZN11 Q6ZN11-3 ZNF793 Zinc finger protein 793 1 S(0.002)FGEKS(0.553)Y(0.445)LNVHR;S(0.001)FGEKS(0.555)Y(0.445)LNVHR;SFGEKS(0.586)Y(0.414)LNVHR;S(0.001)FGEKS(0.55)Y(0.449)LNVHR 91.313 0.0050535 12880400000.0 25071200.0 14462200.0 9852600.0 8615010.0 8352000.0 11112900.0 10048300.0 9039200.0 19014000.0 11264800.0 True False 24936219.444872208 14943565.584415501 11239760.439665591 9705669.382683128 9415577.693817569 10344691.379952773 9562225.340766344 9713751.00412756 14328254.474546583 10545870.819719505 2.364548160237701 1.4170063183850914 1.0657972804529898 0.9203288707590367 0.8928212619683882 0.9809233923678877 0.9067269554341721 0.9210952011629062 1.3586601542429741 1.0 23.330174894043864 4.768677942942051 1.7255028262496463 0.9793200649433474 2.9155639596232623 0.9109390563601399 0.12897778211098243 0.2547033584112881 0.707215202327809 0.03317207599381115 0.8322268179165525 58705.38531996001 -4.768677942942051 1.9362438946799148 up SFGS(ph)PNR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFGSPNR 7 0 D6RAD4;P50613;D6REC6;D6R9G1 D6RAD4 CDK7 Cyclin-dependent kinase 7 1 S(0.004)FGS(0.996)PNR;S(0.012)FGS(0.988)PNR;S(0.002)FGS(0.998)PNR;SFGS(1)PNR 111.82 0.006810899999999999 3491250000.0 2373840.0 3009850.0 2956640.0 2894910.0 2269070.0 2427210.0 3194430.0 2395670.0 3723720.0 2656040.0 True False 2361059.5091984174 3110031.037757254 3372909.2124244245 3261405.3091781936 2558022.6146684196 2259422.6857377635 3039903.216992355 2574447.0603657714 2806059.1012916043 2486529.2532497505 0.9495402099583782 1.2507518396144437 1.3564727654083404 1.3116295756085414 1.0287522703886276 0.9086652339942626 1.2225487446083236 1.0353576403740745 1.1285043590877712 1.0 21.24570197342688 3.2276604273909646 24.9977860727098 1.0591984896055933 1.2294577024484885 0.2817417586563298 0.12682232182649605 272.5786821131836 625113.0612859039 0.0371303178260352 0.04478450440848157 1689.1197012214552 -3.2276604273909646 0.17025921284289525 SFGTEDRPTDRPAPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFGTEDRPTDRPAPPR 16 2 Q9BX40;Q9BX40-2;Q5TBQ1;Q5TBQ0;A0A0C4DFV2 Q9BX40 LSM14B Protein LSM14 homolog B 0 ;;; 278.84 1.2247e-35 1804830000.0 611840.0 718120.0 671990.0 667470.0 675790.0 716710.0 744520.0 673200.0 756670.0 705740.0 False True 608545.9214218139 742022.1900872925 766600.3509582126 751971.6335627598 761847.8507788536 667165.5246538664 708504.7232574036 723437.6024403346 570198.8173585337 660699.0689855872 0.9210636884295186 1.1230864775192824 1.1602867128831016 1.1381454414901917 1.153093573975466 1.0097872934469359 1.0723561701777715 1.094957805148831 0.8630234915178491 1.0 19.333633786200853 1.253250479679413 24.890029926403184 0.9315117642160453 1.0891782108998722 0.39410815106783725 0.07546671164815971 182.0010611301489 308379.8151167223 0.04991158532879204 0.018055355804015412 17.916388852230998 -1.253250479679413 0.1576664466838269 SFGTEDRPTDRPIPPRDEVFEYIIFR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFGTEDRPTDRPIPPRDEVFEYIIFR 26 3 Q8ND56-2;Q8ND56;Q8ND56-3;A0A140TA76;K7EMZ9;I3L4Q1 Q8ND56-2 LSM14A Protein LSM14 homolog A 0 ;; 208.65 9.4128e-26 817550000.0 139786.0 156307.0 135388.0 154565.0 143508.0 171914.0 165542.0 142715.0 169930.0 169049.0 False True 139033.4077076845 161509.5840054233 154449.4535864083 174132.91315209336 161782.89316144312 160029.98982202666 157534.1010281483 153365.11799208604 128053.02844534047 158260.14808986973 0.8785118008908527 1.0205322436176942 0.9759213260605727 1.1002954012984374 1.0222592049488854 1.0111831168712917 0.9954123190804223 0.9690697237626493 0.8091299672778278 1.0 17.27193848675723 -0.6010048519501444 4.943719655491756 0.9999999863667303 0.9831369283408152 0.0007398277696105682 0.07685514611978407 9688783.637102813 1959816.4161849592 0.2863997655083929 0.017710823638336766 0.250608125486558 0.6010048519501444 -0.016863058025915034 SFGTRPLS(ph)SGFSPEEAQQQDEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 S(0.001)FGT(0.003)RPLS(0.785)S(0.158)GFS(0.052)PEEAQQQDEEFEK;SFGT(0.003)RPLS(0.96)S(0.036)GFSPEEAQQQDEEFEK;SFGTRPLS(0.642)S(0.318)GFS(0.04)PEEAQQQDEEFEK 273.33 3.3565e-53 5319450000.0 587960.0 486297.0 470878.0 492670.0 528889.0 771110.0 786720.0 707330.0 970000.0 733660.0 True False 584794.4886884964 502483.1016722556 537173.5294550526 555041.9714854062 596239.8791792964 717804.980697692 748663.3480377484 760114.5563489628 730956.49733408 686837.1906820724 0.8514310183287523 0.7315898272387643 0.7820973248720058 0.8081128672345402 0.868094924485951 1.0450875264702346 1.0900157390928098 1.1066881157004929 1.0642354654793726 1.0 19.389608634568827 2.830313376881968 2.150803268874224 1.0797697155694193 0.7869321376352993 0.9158203039028651 0.03880335367057233 0.07518628683584745 0.6852124965935102 0.013088425264589676 0.013770028275416573 676.5709973259725 -2.830313376881968 -0.2928375779341199 SFGTRPLSS(ph)GFSPEEAQQQDEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 SFGTRPLS(0.333)S(0.628)GFS(0.039)PEEAQQQDEEFEK;S(0.001)FGT(0.206)RPLS(0.277)S(0.502)GFS(0.014)PEEAQQQDEEFEK 330.67 4.5826999999999985e-88 3128310000.0 672360.0 485690.0 489230.0 501340.0 544660.0 812210.0 790420.0 698110.0 962260.0 757120.0 True False 668740.0884662189 501855.8980441944 558109.331536609 564809.5925964515 614019.2225472563 756063.8344366857 752184.3649023761 750206.5131307509 725123.9166233941 708799.9533969573 0.9434821281537201 0.7080360200914606 0.787400350214251 0.7968533150849896 0.8662799984742382 1.06668155212654 1.0612082595342973 1.0584178364224641 1.0230304236734264 1.0 19.435018983473675 2.8602521687066735 3.3752407368042077 1.0485982699096243 0.8021065271085155 0.7886324729392786 0.05769836974984063 0.10120315376354252 2.144924413749636 0.01764179410560825 0.01889175079018951 724.8567186447452 -2.8602521687066735 -0.24649174280110886 SFGTRPLSSGFS(ph)PEEAQQQDEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 SFGTRPLS(0.024)S(0.016)GFS(0.959)PEEAQQQDEEFEK 299.0 2.4525999999999993e-63 2150100000.0 415220.0 300340.0 390980.0 376750.0 378460.0 570310.0 583120.0 498630.0 738960.0 566110.0 True False 412984.50165527884 310336.63534063596 446026.5855409186 424446.5113709521 426654.63769183477 530885.812065335 554912.2578652782 535840.3025918355 556853.2095566929 529980.3751288455 0.7792448947847865 0.5855625036402318 0.8415907578322752 0.8008721290250859 0.8050385593770509 1.0017084348383078 1.047043030094032 1.0110568763259684 1.05070533870488 1.0 19.015579412926822 2.9604742862976754 1.0962088897774558 1.0387112697417944 0.7165293947497999 0.80009613041845 0.06511878017498293 0.19824984500467532 0.5094456494445394 0.0291178938660655 0.03410003816141957 913.0073763633598 -2.9604742862976754 -0.32218187499199447 SFGTRPLSSGFSPEEAQQQDEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 269.25 4.7147e-46 273390000.0 103870.0 97725.0 88419.0 83037.0 91547.0 129160.0 108610.0 103210.0 134310.0 119820.0 False True 103310.77546104188 100977.71754899003 100867.62664827483 93549.47568602455 103204.96780841933 120231.47320993622 103356.11936950851 110912.05428976068 101211.100161794 112172.98501693686 0.9209951526692733 0.9001964023132979 0.8992149636835015 0.8339750936635915 0.9200518983500041 1.0718398301675098 0.9213993846548961 0.9887590516826685 0.9022769621982715 1.0 16.775365743299012 2.990335977347279 24.92959730956823 0.9749357081438166 0.8885364437698502 0.4370061756067031 0.047576924914021074 413.0767376547371 1065589.3316318148 0.013500757297521662 0.015300263949893483 977.9935202324 -2.990335977347279 -0.08639926437396639 SFGWETLDSFMQHDVQELCR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFGWETLDSFMQHDVQELCR 20 0 Q93009;A0A669KBL1;Q93009-3;H3BND8;F5H2X1 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ;; 293.13 1.6021999999999992e-54 724390000.0 360137.0 453156.0 367154.0 401617.0 399641.0 464547.0 411628.7 380613.7 480391.0 425366.0 False True 358198.0624069824 468239.02352141275 418846.0918402226 452461.67102128104 450532.9124922116 432433.9593160128 391716.6472066631 409017.0270112071 362005.07495960384 398218.77770584566 0.8995006826914989 1.1758336114106838 1.0517989489426183 1.1362138009360856 1.131370336395862 1.0859205630816362 0.9836719640981232 1.0271163739881142 0.9090607857447848 1.0 18.603201726294767 2.240676141858303 22.53187864950231 0.9870838426683687 1.0880514304780853 0.29312471654289796 0.07526000924869344 19.43525850276201 207006.83886665953 0.025442753359113796 0.020288741961638775 174.05084731451635 -2.240676141858303 0.1009675878097166 SFHPEQDAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFHPEQDAGK 10 0 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0;K7EML4 U3KQC1 WDR18 WD repeat-containing protein 18 0 115.57 0.0012049 372980000.0 247750.0 359570.0 354020.0 369740.0 361620.0 427540.0 399910.0 313480.0 452980.0 428340.0 False True 246416.1415276129 371538.07008534507 403862.93880299747 416549.04608970415 407670.16351033445 397985.1661209053 380564.8254954439 336873.4694191863 341349.14862102177 401002.9744796762 0.6144995354394855 0.9265219804602111 1.007132027703865 1.0387679708116875 1.016626283232211 0.9924743491923304 0.9490324254807536 0.8400772334826155 0.8512384454602646 1.0 18.613253412491478 4.7344091532200405 4.395033987123347 0.9559058250123822 0.5914572073087802 0.7233136563188163 0.06396730785669337 0.12150542171006898 5.756366238237663 0.01816235565887733 0.1373340376554983 54251.17555253192 -4.7344091532200405 -0.36444861770360204 SFIKDYPVVSIEDPFDQDDWGAWQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFIKDYPVVSIEDPFDQDDWGAWQK 25 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 125.11 0.00013241 712680000.0 223340.0 244390.0 213490.0 209190.0 225520.0 288750.0 259220.0 227870.0 342130.0 307920.0 False True 222137.56225540687 252524.37341312523 243547.53631165455 235673.43255126628 254238.63523823526 268789.3921443873 246680.53828343633 244874.8165004143 257816.64580712217 288268.2819764246 0.7705931458445154 0.8760047122831827 0.8448641475289763 0.8175489545205681 0.8819514706755965 0.9324279116020459 0.8557325023486647 0.849468470209431 0.8943635561966097 1.0 18.137052580944722 -4.999999999980252 0.13107478897247996 1.4663644142433037 0.8006615399464 0.6286461494146393 0.03626078312596445 102.08885770470879 0.8421095355942552 12.547961740848113 0.27865737817332775 1.0000000000454708e-05 4.999999999980252 -0.6657028742969037 SFKDEWTQLDMFYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFKDEWTQLDMFYR 14 1 Q9NRN7;E9PLW6;E9PNF3 Q9NRN7 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0 ; 104.41 0.00096592 392040000.0 390540.0 458820.0 443590.0 434310.0 410500.0 432330.0 461390.0 409640.0 591190.0 503660.0 False True 388437.3760330727 474091.5463374531 506043.6162466005 489293.6014691919 462774.7417758755 402444.0446953524 439070.80301903706 440209.4169097723 445499.1460401391 471515.98759497976 0.8238053136105546 1.0054622935599922 1.0732268460879404 1.0377030988172615 0.9814614009936546 0.8535109206965885 0.9311896405858198 0.9336044344012806 0.944822991713298 1.0 18.846947163328604 2.975520812510274 24.573059116738506 0.9277575851957243 0.9949029007282119 0.11330258182379827 0.06958527782771246 1088.7307839435296 1092907.1473849455 0.02143228965496663 0.02284369858967371 945.1936874716263 -2.975520812510274 0.06714531553248759 SFKPDFGAESIYGGFLLGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFKPDFGAESIYGGFLLGVR 20 1 P35606;P35606-2;H0Y938 P35606 COPB2 Coatomer subunit beta 0 ; 219.34 8.4603e-25 1150350000.0 856350.0 886400.0 768710.0 834330.0 830460.0 879360.0 944250.0 826780.0 1115180.0 876820.0 False True 851739.5067494285 915903.2881598844 876937.686252902 939956.0924542167 936214.1584779399 818571.912990782 898573.0201147096 888478.5219037714 840358.8316464117 820860.5969166314 1.0376177269913873 1.115784204529074 1.0683149971467882 1.1450861400643901 1.1405275901835303 0.997211848230447 1.0946718888566298 1.0823744314700092 1.0237534056367437 1.0 19.64677771079626 1.1593209392586528 3.0968382818854496 1.0007399632658567 1.0875008524965117 0.32963295277353577 0.04243003217522425 0.2683646117276525 4.602425516747442 0.03923745589970316 0.01063773420801015 14.431814541513715 -1.1593209392586528 0.08676088923065506 SFLDDPIWR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFLDDPIWR 9 0 Q7L576;Q7L576-2;Q7L576-3;H0YL50 Q7L576 CYFIP1 Cytoplasmic FMR1-interacting protein 1 0 ;; 138.54 0.00031079 389732000.0 815150.0 1029910.0 905850.0 946670.0 916960.0 998440.0 970950.0 839490.0 973810.0 994790.0 False True 810761.3229716782 1064189.931756258 1033385.8062106539 1066518.3249357368 1033729.4207522719 929420.1928749507 923981.4391108048 902137.0066438437 733827.5738854649 931301.6505174311 0.8705679008742434 1.1426909113336094 1.1096144902529752 1.1451910606441849 1.1099834518471345 0.9979797548501765 0.9921398062565882 0.9686839985117781 0.7879590608239021 1.0 19.828889009802566 2.0705645180964076 1.3613852194879408 0.9079972418215627 1.0817252596282418 0.34805679733313943 0.09090516396714088 0.4541870042438466 1.5803065698908179 0.060100170308081236 0.02997562126832941 117.64257396375969 -2.0705645180964076 0.17372801780667912 SFLEDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFLEDIR 7 0 P52209-2;P52209;K7ELN9 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;; 117.93 0.01191 1185640000.0 2447670.0 2829840.0 2781320.0 2494790.0 2104980.0 2597430.0 2730700.0 2270490.0 3132430.0 2645930.0 False True 2434492.016681705 2924029.513725596 3172905.680333178 2810630.158203419 2373036.725806049 2417875.777792539 2598605.6087129856 2439925.4931146074 2360484.5989115397 2477064.4821053576 0.982813339849971 1.1804414196114688 1.2809136392107148 1.1346616846302484 0.9580036139346316 0.976105303378089 1.0490665977755755 0.9850068541779807 0.9529362743537738 1.0 21.240199994146955 3.300399985257241 5.999809657402123 0.9899078455077526 1.1592654784574288 0.5282073617931542 0.07272015708639855 0.1550981612642649 10.791073634075227 0.020661338256498116 0.027872968075043976 1997.1007982336885 -3.300399985257241 0.1693576329496762 SFLEDIRK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFLEDIRK 8 1 P52209-2;P52209;K7ELN9 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ;;; 103.56 0.0076141 4088410000.0 4141560.0 4522260.0 4484300.0 3694050.0 2814510.0 3960300.0 4818270.0 3592900.0 7230480.0 4549650.0 False True 4119262.3011305747 4672780.690336105 5115650.461765667 4161716.3512405218 3172921.1655922527 3686533.7825434394 4585191.872521155 3861020.4423765214 5448625.087468162 4259287.441848664 0.9671247497075911 1.097080381198216 1.201057813450908 0.9770921563899446 0.7449417793261461 0.8655282914983002 1.0765161861278463 0.9064944536123437 1.279233947428373 1.0 22.022180664071875 3.5144518563456253 23.28931876881007 0.9619465580373742 1.0892517256822971 0.104731655427444 0.14219174764165343 501.3450723163246 312770.11844057037 0.038160643657079836 0.05909119575149645 3269.278032893026 -3.5144518563456253 0.12730516764492295 SFLEEVLASGLHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFLEEVLASGLHSR 14 0 A0A2R8YE10;Q9NRW7;A0A087WU65 A0A2R8YE10 VPS45 Vacuolar protein sorting-associated protein 45 0 ; 224.42 5.6674e-12 136960000.0 329340.0 442740.0 442150.0 424670.0 411570.0 470570.0 429390.0 403120.0 514390.0 440150.0 False True 327566.8700331138 457476.3332580184 504400.8767633056 478433.1784576042 463980.99993348954 438040.60350263 408618.7652709074 433202.8614018828 387625.4769728629 412059.25016862643 0.7949508957730328 1.1102197877387925 1.2240979338696811 1.1610786028024263 1.1260055434834073 1.0630524695741481 0.9916505092500384 1.0513120654969006 0.9407032527827867 1.0 18.652492272472873 2.404356437016244 4.100578868926162 1.005658330922341 1.0969193685230942 0.11756187186422828 0.10914145404577795 0.48030849887156973 15.893267240350223 0.040259746505557976 0.03348937034031963 253.7210131953392 -2.404356437016244 0.09126103760075321 SFLEYYDFYEVACK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFLEYYDFYEVACK 14 0 Q9H832-2;Q9H832;I3L286 Q9H832-2 UBE2Z Ubiquitin-conjugating enzyme E2 Z 0 234.26 7.699699999999999e-17 150790000.0 76756.0 79803.0 82022.0 76567.0 56042.0 94334.0 78223.0 84725.0 123250.0 82791.0 False True 76342.75422439333 82459.19461306774 93569.98465199547 86260.37434940868 63178.616513041765 87812.91261835027 74439.0546491214 91047.60972483252 92876.68896538686 77507.20749905877 0.984976193669736 1.0638906660915257 1.2072423671454267 1.1129335855695253 0.8151321477271516 1.1329644745544039 0.9604146124091153 1.1746986204597576 1.1982974482278275 1.0 16.24204285431906 1.684814853220591 10.38828927546985 1.139007207956389 1.0449041379432267 0.10048983870999895 0.11260076570246529 0.24924633797930373 40.12713766700443 0.05340489316697314 0.02888610922295602 48.39660010451169 -1.684814853220591 -0.09410307001316243 SFLHIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFLHIGK 7 0 O60547;O60547-2 O60547 GMDS GDP-mannose 4,6 dehydratase 0 ; 81.297 0.027584 931160000.0 2020900.0 2495900.0 2292300.0 2270700.0 2221200.0 2760100.0 2659300.0 2406400.0 3083400.0 2774900.0 False True 2010019.6989430985 2578974.522696587 2615035.91497122 2558170.3871798865 2504056.6539161406 2569300.7835765313 2530659.499487472 2585977.787451606 2323537.3854431966 2597803.506288587 0.7737381576694999 0.9927519600514741 1.0066334534697938 0.9847436039666744 0.9639130318572938 0.9890281452607719 0.9741535467795862 0.9954478008793373 0.894423839146623 1.0 21.308860881086197 4.740843058948798 24.866182548819847 0.979336890913234 0.7737380804128856 0.8028096702029188 0.03034754559006258 75.23417408007874 819585.2676428327 0.006849423871524644 0.04576892419816869 55060.868691952215 -4.740843058948798 -0.20559881050034834 SFLIWVNEEDHTR ddPTM_BT-474_Trastuzumab_2h_R1 5 SFLIWVNEEDHTR 13 0 P12532;P12532-2;F8WCN3 P12532 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial 0 ;;;; 247.32 2.8988e-17 2221360000.0 1568510.0 1975400.0 2005690.0 1774520.0 1967430.0 2381450.0 2006890.0 1674090.0 2310440.0 1844170.0 False True 1560065.3164378437 2041149.9948454816 2288073.7182299974 1999174.0500543658 2217970.548628771 2216825.9668303067 1909809.0636357 1799019.096656773 1741063.0203098452 1726473.4917266294 0.9036138254735886 1.1822654704093645 1.3252874887419888 1.1579523575858737 1.284682654704765 1.2840196953231413 1.1061907829964528 1.042019530144996 1.0084504793459788 1.0 20.719396752546388 1.8854012364529285 2.8126810822928325 1.0174258476383715 1.1980604483611805 0.32412120427077085 0.11046054098655272 0.3180240176602846 4.479678852920597 0.061003220838376386 0.03164060650774264 76.80707677137106 -1.8854012364529285 0.180634600722809 SFLLDLLNATGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFLLDLLNATGK 12 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 104.52 0.004952600000000001 22693000.0 146950.0 134370.0 127440.0 148120.0 115620.0 163410.0 191670.0 151650.0 223130.0 200920.0 False True 146158.8375276797 138842.42422161964 145382.44427166248 166871.9768129142 130343.52166656962 152113.85132576412 182398.18984949557 162966.89306309674 168142.60128881797 188097.11358373382 0.7770392365038351 0.7381422371471542 0.77291161731168 0.8871586258479666 0.6929586487702564 0.8086984878587661 0.9697022265485148 0.8663976281090031 0.8939137772253328 1.0 17.521118184805715 1.8451092447691482 0.4359655978011263 0.9963161591320083 0.7500080776703392 0.5800997729233276 0.06136713682861756 0.7351062170021485 0.35077403328380774 0.06786415356034788 0.056745542249468955 70.00180601640827 -1.8451092447691482 -0.24630808146166916 SFLSEPSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 6 SFLSEPSSPGR 11 0 Q69YN4-3;Q69YN4;H0YC41 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 SFLSEPS(0.195)S(0.805)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR 244.16 7.697999999999999e-16 12556800000.0 8787510.0 10623800.0 9668300.0 10107500.0 9698300.0 10489200.0 10073300.0 9344260.0 11020500.0 10464600.0 True False 8740199.022544155 10977406.760777289 11029512.601629917 11387108.463654667 10933321.01867229 9764106.292920904 9586015.99525707 10041576.13039085 8304645.442134257 9796740.268805206 0.892153796337207 1.1205162594471922 1.125834951116353 1.1623364661318534 1.1160162175051416 0.9966688944496962 0.9784903684525429 1.0249915640169875 0.8476947652249107 1.0 23.22387036137463 2.6282562027075422 4.444631999341792 0.9735730081576265 1.0919302907050352 0.32623999931556924 0.08170885891254041 0.28193178531160307 9.154590530121014 0.027212874260055926 0.02554640220563067 424.8701330453408 -2.6282562027075422 0.11835728254740874 SFLVASVLPGPDGNINS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFLVASVLPGPDGNINSPTR 20 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 SFLVASVLPGPDGNINS(0.989)PT(0.011)R;SFLVASVLPGPDGNINS(0.955)PT(0.045)R 184.62 6.4941e-17 219170000.0 363430.0 407660.0 353490.0 345600.0 391200.0 416090.0 395670.0 365870.0 517880.0 420470.0 True False 361473.33326086856 421228.71666432626 403258.3194098403 389352.92456483375 441017.00117593777 387326.6776705045 376529.9304938175 393173.0772502155 390255.4132364675 393635.24461752205 0.9182951430380585 1.0700990890020927 1.0244466798232676 0.98912109596068 1.1203697006462277 0.9839735718961159 0.9565452678397103 0.9988258994243373 0.9914137988727646 1.0 18.586499874378482 -0.3266900130694278 8.71719688080864 0.9999999999782823 1.0077545424305046 1.1393107641088918e-05 0.053602703471497294 0.0 0.0 0.05000655123731233 0.0117866571612187 0.471313616491419 0.3266900130694278 0.0077545424522222905 SFLVIVDGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SFLVIVDGSPK 11 0 Q9H116;Q9H116-4 Q9H116 GZF1 GDNF-inducible zinc finger protein 1 1 SFLVIVDGS(1)PK;SFLVIVDGS(1)PK;SFLVIVDGS(1)PK 138.02 6.9485e-05 280748000.0 1036180.0 884230.0 850200.0 819734.0 774310.0 1065880.0 1071140.0 1015270.0 1549810.0 1019120.0 True False 1030601.3220104212 913661.0610216785 969900.769929125 923512.2403507787 872913.7888050624 992198.2244116339 1019324.8660478354 1091034.6028365977 1167880.0918900308 954078.8890874705 1.0802055614039847 0.9576368070522453 1.0165834094251758 0.9679621370032333 0.9149283133598748 1.0399540706331136 1.0683863543220933 1.1435475779996753 1.2240917446638513 1.0 19.863749036464004 2.1498923492530095 2.1815776501701976 1.1347130899281477 0.9870192929514625 0.42830233855631383 0.0662536411268336 0.25532394688298804 2.4073556125355253 0.031391195272780975 0.01938123380433327 141.21874552624305 -2.1498923492530095 -0.14769379697668517 SFNYSPNS(ph)STSEVSSTSASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFNYSPNSSTSEVSSTSASK 20 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 S(0.011)FNY(0.035)S(0.21)PNS(0.724)S(0.019)T(0.001)SEVSSTSASK 168.99 7.3611e-12 300380000.0 121520.0 113580.0 106260.0 106060.0 89305.0 123600.0 114340.0 111560.0 141000.0 134100.0 True False 120865.74982214125 117360.44163944022 121220.4843715229 119487.18512542312 100677.46239779434 115055.82292310389 108808.93737878281 119885.17369020148 106252.43930320117 125541.6231912138 0.9627543977032169 0.9348329156194457 0.9655800306715063 0.9517734603720305 0.8019448836060643 0.9164755082691668 0.8667160310095301 0.9549436325799538 0.8463522822336536 1.0 16.93780624192572 3.416936432059853 24.999958275015782 0.8965384508674225 0.9534776815289476 0.2150348097862642 0.052391857218653956 105.03459488805356 43629.20288028146 0.01367507083986901 0.01851613525158702 2611.779038777561 -3.416936432059853 0.056939230661525175 SFPAAIEHTIQWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFPAAIEHTIQWAR 14 0 A0AVT1;A0AVT1-2;H0Y8S8 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ; 185.87 1.1281e-06 2360500000.0 1676030.0 1960060.0 1804030.0 1830330.0 1798140.0 1990220.0 2174500.0 1711970.0 2073320.0 2028400.0 False True 1667006.4407044377 2025299.4122187083 2058021.7430901423 2062049.5903320347 2027122.4705892173 1852640.775873948 2069311.1276033176 1839725.8946075141 1562378.0670646338 1898945.7753993908 0.8778588953409314 1.0665388335234283 1.0837706741032636 1.0858917706053715 1.067498870610388 0.9756154177094899 1.0897157540836546 0.9688143381664379 0.8227607587878757 1.0 20.856767279087883 1.5094330139792997 5.3789939911122415 0.9060085038630659 1.0387724357782462 0.31490341430888125 0.07365126506974765 0.15274404583978995 9.80000638578524 0.04131703443372442 0.01802303206777095 32.31714702003991 -1.5094330139792997 0.13276393191518032 SFPIKPVPS(ph)PSWSGSCR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFPIKPVPSPSWSGSCR 17 1 Q9P0U3-2;Q9P0U3 Q9P0U3-2 SENP1 Sentrin-specific protease 1 1 SFPIKPVPS(0.994)PS(0.006)WSGSCR 187.07 2.9538e-10 1138000000.0 1632200.0 1692200.0 1530200.0 1488300.0 1495600.0 1620800.0 1544900.0 1409800.0 1950900.0 1556300.0 True False 1623412.4165544664 1748523.8540434965 1745638.859263169 1676718.6274011638 1686055.7948842873 1508757.9109528086 1470167.2849088819 1515006.4348193465 1470126.8357206753 1456975.6015845363 1.1142344558062067 1.2001051027497553 1.198124977085887 1.1508213490861794 1.1572299447229002 1.0355409584841067 1.0090541552720573 1.039829653407853 1.0090263928385872 1.0 20.474545287654728 2.7329811664729533 3.488648034008515 1.0196546632929937 1.169310328348732 0.8957403673928378 0.024863328415487596 0.07101653173414249 1.8624324015143057 0.00817351421053024 0.008135841037148768 540.7308732109676 -2.7329811664729533 0.14965566505573835 SFPIKPVPSPS(ph)WSGSCR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFPIKPVPSPSWSGSCR 17 1 Q9P0U3-2;Q9P0U3 Q9P0U3-2 SENP1 Sentrin-specific protease 1 1 SFPIKPVPS(0.417)PS(0.581)WS(0.001)GSCR 119.79 6.2408e-05 1486400000.0 631300.0 587690.0 580440.0 546940.0 515130.0 592160.0 539220.0 474680.0 678830.0 551960.0 True False 627901.1509440235 607250.9063838936 662160.9067250768 616182.5479209789 580728.7520852789 551225.3729947023 513135.8685795645 510103.03197620035 511541.442355973 516733.4402432688 1.2151355070970808 1.1751724566113058 1.281436143194726 1.1924572708723693 1.1238458881466666 1.0667499528097026 0.9930378578517957 0.9871686100594786 0.9899522703913811 1.0 18.979060724779895 2.807858043154978 1.3578938034624466 0.9881240485752184 1.2219602359699853 0.9334862421517718 0.026835351234667335 0.09569443306295666 0.3610455108988793 0.011554819800788162 0.011672134709120515 642.477677780717 -2.807858043154978 0.23383618739476686 SFQSLACS(ph)PGLPAADR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFQSLACSPGLPAADR 16 0 Q96JY6;Q96JY6-5;Q96JY6-3;Q96JY6-4;C9JS55;C9JSR2;C9K0F0;C9J0X3;A0A087WXJ0 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 1 SFQSLACS(1)PGLPAADR;SFQSLACS(1)PGLPAADR 149.52 8.6821e-07 137791000.0 261500.0 265790.0 231550.0 254620.0 237890.0 335800.0 255000.0 230495.0 315560.0 245970.0 True False 260092.1130553814 274636.6594765522 264150.22733132023 286854.8658932232 268183.88141550124 312586.93638817413 242664.67580540167 247695.7073298942 237794.466287363 230271.98401448852 1.129499596611877 1.1926620628728866 1.1471227316767294 1.245721954066173 1.164639643694681 1.3574683769107858 1.0538176272026796 1.075665840940118 1.0326678136946141 1.0 17.812979371099406 2.06182637205107 24.999998841445162 1.0495737484109422 1.2030327833969816 0.6254777003485098 0.06261911111423073 44.55063038170464 18014.03381584931 0.02264905465108347 0.016727434093330436 115.29922073049309 -2.06182637205107 0.1534590349860394 SFS(ph)ADNFIGIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7;Q8N7R7-2 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 SFS(1)ADNFIGIQR;SFS(1)ADNFIGIQR 174.44 3.187e-05 181674000.0 196009.0 221060.0 223080.0 225400.0 247490.0 244630.0 214300.0 185510.0 249420.0 207873.0 True False 194953.70932264693 228417.84846640826 254487.72495388045 253935.6168892175 279006.38451184315 227719.30389707888 203933.4902945006 199353.69820069295 187953.7830567691 194606.36717097118 1.00178484474442 1.1737429344525612 1.3077050286350629 1.3048679782718655 1.433696073606484 1.1701534086858338 1.04792814982942 1.024394530861115 0.9658151775252172 1.0 17.570199387719814 2.289643689734746 3.2162190074767603 1.0090911531103337 1.251103945255357 0.5244989075859754 0.10557492807050395 0.20819227220632117 4.415992021465469 0.04393367064574624 0.03388433054175669 194.82455356320992 -2.289643689734746 0.24201279214502325 SFS(ph)ASQSTDR ddPTM_BT-474_Trastuzumab_2h_R1 5 SFSASQSTDR 10 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 SFS(0.874)AS(0.126)QSTDR;SFS(0.93)AS(0.07)QSTDR;SFS(0.996)AS(0.004)QSTDR;S(0.005)FS(0.993)AS(0.002)QSTDR;SFS(0.995)AS(0.005)QSTDR 213.59 1.1482e-06 3012940000.0 1667610.0 1662510.0 1588540.0 1624640.0 1523580.0 1632290.0 1733960.0 1467130.0 1904760.0 1667490.0 True False 1658631.7730488903 1717845.6403414817 1812192.6241627957 1830319.257421909 1717598.882033834 1519453.6342973579 1650081.7304295467 1576614.690535188 1435357.4204763526 1561069.3605899864 1.0624971669561378 1.1004287725513 1.1608661792438872 1.1724778562883091 1.1002707025040126 0.9733415264284603 1.0570201248494937 1.0099581289196058 0.9194706248887476 1.0 20.57410320911029 2.841462027636533 4.761825708718636 0.9996472632072084 1.1260213145370106 0.6834213620989699 0.043316358288583205 0.14369923667031154 5.237534237857384 0.014069663237789144 0.01496227894190319 694.1639051186314 -2.841462027636533 0.12637405132980217 SFS(ph)EDTLMDGPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFSEDTLMDGPAR 13 0 Q9BRG2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 S(0.002)FS(0.994)EDT(0.004)LMDGPAR;SFS(0.997)EDT(0.002)LMDGPAR;S(0.045)FS(0.955)EDTLMDGPAR 246.64 3.5283000000000006e-17 1268548000.0 1513150.0 1471740.0 1403050.0 1349070.0 1292380.0 1471540.0 1486730.0 1339620.0 1648910.0 1497440.0 True False 1505003.3685267686 1520725.9762143837 1600587.2444707786 1519862.1236767366 1456956.9324635975 1369815.9034325609 1414811.1900398622 1439589.246852525 1242558.2247619962 1401872.0971771162 1.0735668193677035 1.0847822560108 1.141749841297081 1.084166042492187 1.0392937668118247 0.9771332963905156 1.0092298668964172 1.0269048437096067 0.8863563425394351 1.0 20.41892329728484 3.06202130809499 2.3579627607661653 0.9876161677294718 1.100123698282475 0.6585742176225952 0.03925073939972304 0.19137501752314567 2.159475967700621 0.012691856475323872 0.015388743048597242 1153.5098518962175 -3.06202130809499 0.11250753055300311 SFS(ph)FEKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFSFEKPR 8 1 P78314;P78314-3;P78314-4;H0YAD9 P78314 SH3BP2 SH3 domain-binding protein 2 1 S(0.018)FS(0.982)FEKPR;S(0.309)FS(0.691)FEKPR;SFS(1)FEKPR;S(0.001)FS(0.999)FEKPR 151.83 0.00028276 902900000.0 1256250.0 1173570.0 912390.0 1193620.0 1125840.0 1252400.0 996770.0 964280.0 1601840.0 1310140.0 True False 1249486.4895824962 1212631.568011955 1040846.5813639528 1344732.169615383 1269209.0506235126 1165824.5358324882 948552.427068825 1036239.4701146254 1207087.9955563112 1226525.7435327128 1.0187201501239187 0.9886719250745287 0.8486137260894698 1.0963750061553579 1.0348001722066271 0.9505096342084192 0.7733652816260893 0.8448574973485566 0.9841521891579578 1.0 20.22614608424473 2.467960359920334 24.941668640734296 0.876864119954219 0.9940256774751317 0.20406191042466326 0.08504743848360834 251.10786641037038 683666.814940728 0.02964713489984482 0.024835363803677468 293.7381531235061 -2.467960359920334 0.11716155752091273 SFS(ph)KEVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSKEVEER 9 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 S(0.117)FS(0.883)KEVEER 113.95 0.0010404 1878100000.0 3204800.0 2477100.0 2015100.0 2424300.0 2778600.0 3533900.0 3357900.0 2940100.0 5564600.0 3727300.0 True False 3187545.7128867498 2559548.7760614282 2298808.564436814 2731216.131430922 3132438.2399475016 3289609.8109057997 3195465.5485763107 3159505.1915252917 4193278.89181982 3489420.522897919 0.9134885554692427 0.7335168573880444 0.6587937880664732 0.7827133799175005 0.8976958263964274 0.9427381392752917 0.9157582262176063 0.9054526878581441 1.2017121078709525 1.0 21.73455604181804 2.3877565698660437 0.7159704313704324 1.0480662545733965 0.7598276424497911 0.5635171852731001 0.09407130569751336 0.553153560109518 0.562960816864242 0.07844263222175234 0.05636938033985524 244.2061348195302 -2.3877565698660437 -0.28823861212360546 SFS(ph)LDEPPLFIPDNIATIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSLDEPPLFIPDNIATIR 19 0 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 S(0.303)FS(0.697)LDEPPLFIPDNIATIR;S(0.071)FS(0.929)LDEPPLFIPDNIATIR 302.84 4.7121e-50 174377000.0 211198.0 134933.0 134191.0 167214.0 138072.0 146019.0 116847.0 139399.0 203413.0 159293.0 True False 210060.93343430353 139424.16333627907 153083.92639091867 188383.27525516256 155654.6507831394 135925.05022175348 111194.66421111296 149801.6612337793 153284.59174455373 149126.78436240155 1.4086063367652482 0.9349371002157226 1.0265354211547983 1.2632423884187134 1.0437739367119598 0.9114730851530616 0.7456384490990728 1.0045255241991786 1.0278810235192093 1.0 17.18617987489134 2.9465987512724707 4.547450552242834 0.9297258289749185 1.1355465369544944 0.34676082837914146 0.14068888002435234 0.25857593010393015 11.280563693332756 0.043175519917631994 0.047272028768132295 884.2982209079532 -2.9465987512724707 0.20582070797957586 SFS(ph)LDIK ddPTM_BT-474_Trastuzumab_2h_R1 3 SFSLDIK 7 0 Q9BY84;Q13202 Q9BY84 DUSP16;DUSP8 Dual specificity protein phosphatase 16;Dual specificity protein phosphatase 8 1 S(0.001)FS(0.999)LDIK;S(0.006)FS(0.994)LDIK;S(0.032)FS(0.968)LDIK 93.111 0.015919 536440000.0 1553590.0 1398470.0 1069990.0 1131800.0 1074560.0 1532690.0 1464840.0 1448160.0 2187510.0 1535160.0 True False 1545225.6440600762 1445017.228557032 1220635.2914801962 1275085.7639539302 1211398.8465838868 1426738.747864178 1393980.092967785 1556229.052807478 1648427.4716322403 1437184.7744834016 1.0751753507933661 1.0054498587883007 0.8493238400183828 0.8872107376814243 0.8428970777395871 0.9927316050067546 0.9699379771601417 1.0828315749217892 1.1469836731500098 1.0 20.45481412596556 1.8911406969445352 2.1690838393930925 1.0883241039114464 0.933236211362797 0.3822751993475668 0.07580879051028436 0.31109238721926563 2.702060524950575 0.04791471398444718 0.023217535137698513 77.82886497972947 -1.8911406969445352 -0.1550878925486494 SFS(ph)LEGLTGGAGVGNKPSSSLEVSSANAEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELR 32 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;H0YMW2;A0A087WY36;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 S(0.194)FS(0.806)LEGLTGGAGVGNKPSSSLEVSSANAEELR 115.32 1.2363e-06 128140000.0 40829.0 35989.0 25976.0 34166.0 37246.0 50654.0 62754.0 39735.0 54019.0 41765.0 True False 40609.18120052834 37186.8721091901 29633.195012560496 38491.41209688108 41989.05732566204 47152.40820669018 59718.34927643995 42700.22747024166 40706.74126751511 39099.52194318457 1.0386106832594388 0.9510825263599454 0.7578914917584012 0.9844471283514123 1.0739020642420194 1.2059586885795495 1.5273421849816107 1.0920907813729608 1.0411058561448907 1.0 15.254863347838773 3.10475903654372 2.503694822101363 1.1984374278802719 0.9169011874615128 0.35532767601140147 0.15099633901808035 0.2883618198012009 3.6757950455833353 0.048865248247656944 0.06057413206008141 1272.796688001215 -3.10475903654372 -0.281536240418759 SFS(ph)MQDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSMQDLR 8 0 Q9H6H4;E5RGS2 Q9H6H4 REEP4 Receptor expression-enhancing protein 4;Receptor expression-enhancing protein 1 S(0.003)FS(0.997)MQDLR;SFS(1)MQDLR 152.7 0.00047513 312440000.0 806430.0 565440.0 581180.0 733190.0 493700.0 597600.0 526480.0 570420.0 812560.0 759740.0 True False 802088.270482797 584260.3285843014 663005.0922928825 826011.7788243354 556569.7686108397 556289.3185990857 501012.15105109 612987.6369340686 612315.4757461651 711252.7427538619 1.1277120245290495 0.8214524787941551 0.9321652521518976 1.161347758922017 0.7825203829174516 0.7821260786218109 0.7044080408199869 0.8618422117581919 0.8608971733105354 1.0 19.440002785230043 3.2026211702947003 24.99236066812945 0.8167601628736093 0.9915467564223359 0.35791425136514843 0.11505819609639353 187.14000234668475 130136.99341089762 0.03251895329681939 0.03886879591575183 1594.487688558428 -3.2026211702947003 0.1747865935487266 SFS(ph)PEER ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSPEER 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.001)FS(0.999)PEER;SFS(1)PEER 185.47 0.00064306 1349620000.0 1470750.0 1687150.0 1465320.0 1625100.0 1511680.0 1587090.0 1692430.0 1433030.0 1639360.0 1613900.0 True False 1462831.6454156872 1743305.767846289 1671624.3192102355 1830837.493374745 1704183.4875706595 1477378.2039080008 1610560.6951895554 1539969.9753788942 1235361.6942985537 1510899.5202706938 0.9681859222204302 1.1538197904344805 1.1063768945473926 1.2117533090795678 1.1279264204580175 0.9778136693321027 1.065961484256085 1.0192404952931564 0.8176332560336147 1.0 20.52697628910734 1.5139752126564379 3.086610595601578 0.9085291306591227 1.092946977124571 0.4210670131185399 0.08178276613084402 0.20501306836335187 4.117924549675328 0.05867363400340042 0.0216199283393679 32.65691927142652 -1.5139752126564379 0.18441784646544834 SFS(ph)PTMK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFSPTMK 7 0 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 SFS(0.998)PT(0.002)MK;SFS(0.97)PT(0.03)MK;SFS(0.996)PT(0.004)MK;SFS(0.996)PT(0.004)MK 181.41 0.00070524 3244300000.0 3778060.0 3470660.0 3122460.0 3067120.0 3069180.0 3728570.0 3780370.0 3563510.0 4806600.0 3943390.0 True False 3757719.344741926 3586178.820041727 3562075.227091147 3455417.0775211 3460021.8805449028 3470822.732009689 3597499.0606841864 3829437.211337125 3622077.8351401966 3691719.474093966 1.017877813065457 0.9714115184555995 0.9648824218869889 0.9359912370831318 0.937238569946887 0.9401642666420393 0.9744779054662859 1.0373044967824805 0.9811357175315003 1.0 21.815861499147044 1.9551861700742554 8.298882474197974 1.0093436164059004 0.9594424153754004 0.3738764850700016 0.02582127005460606 0.3324512095945225 57.24657478965311 0.011302687077137663 0.007181520803733527 90.19576991515329 -1.9551861700742554 -0.0499012010305 SFS(ph)SQRPVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSSQRPVDR 10 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.168)FS(0.526)S(0.307)QRPVDR 66.00399999999999 0.040739 466830000.0 594590.0 211780.0 258980.0 342660.0 234390.0 289740.0 288260.0 312390.0 497100.0 358580.0 True False 591388.793505159 218828.96927628637 295442.1329054865 386040.72086627845 264238.177161626 269710.9557745967 274315.7625398634 335702.12808427773 374596.3657987328 335695.11740421696 1.7616842272777424 0.6518681920916657 0.8800906465068985 1.1499741904242218 0.7871373858662701 0.8034402104509389 0.8171574393486174 1.0000208840691964 1.1158826756114957 1.0 18.356792028011 4.749496294548353 24.9449821784763 0.9106807565871636 1.7616847286638497 0.7482431783358721 0.1479049153412079 777.8874522141715 1774376.2076852696 0.03540974141029499 0.5324393093336698 56168.948593437635 -4.749496294548353 0.8510039720766861 SFS(ph)VER ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSVER 6 0 Q8NFH8-3;Q8NFH8-2;Q8NFH8-4;Q8NFH8 Q8NFH8-3 REPS2 RalBP1-associated Eps domain-containing protein 2 1 S(0.105)FS(0.895)VER 77.282 0.076395 592140000.0 653090.0 637960.0 575550.0 630800.0 599230.0 679900.0 724270.0 637650.0 766000.0 719570.0 True False 649573.8360051202 659194.1129450356 656582.4372297195 710659.2153226193 675538.3885855254 632900.1133124465 689234.2931199146 685234.6809210917 577229.5638741297 673646.4265451288 0.9642652442120601 0.9785461437475241 0.974669220168028 1.0549439399052627 1.002808538672282 0.9395137988905332 1.0231395372417098 1.0172022798894587 0.8568731921202584 1.0 19.36163204431131 -0.11423013023964235 7.456187293487774 0.9999999948441666 0.9851133983825987 0.002539230055020547 0.05174633831614143 0.0 0.0 0.0481043430550063 0.011338302313122545 0.7687229902901448 0.11423013023964235 -0.01488659646156787 SFSAS(ph)QSTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSASQSTDR 10 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 SFS(0.023)AS(0.977)QSTDR 203.78 2.0882e-07 490210000.0 245030.0 335420.0 301490.0 287730.0 271480.0 273150.0 286020.0 235830.0 329130.0 275970.0 True False 243710.78570539234 346584.2519343282 343937.17140194273 324156.58849837835 306051.36881197273 254267.7834259373 272184.1198974942 253428.83212047553 248020.32161604735 258357.35833019612 0.9433088621146041 1.3414917003887803 1.3312458898978619 1.2546830119082069 1.1846048078136053 0.9841708595772523 1.0535179708318068 0.9809236081311002 0.9599893853190068 1.0 17.979008448485267 2.8221577827260926 3.648135155205524 0.9973103128362326 1.2334351274763007 0.5085755071248754 0.10554290600565291 0.1906041844627868 4.834995631568776 0.03326181657444666 0.03507835624416704 663.9842574808681 -2.8221577827260926 0.23612481464006807 SFSEFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSEFGK 7 0 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 89.55 0.041389 105600000.0 139250.0 144840.0 147350.0 134060.0 138860.0 144010.0 172380.0 155280.0 193220.0 149980.0 False True 138500.29347212942 149660.91184237108 168095.59921084042 151031.98225451852 156542.99791229758 134054.92766307603 164041.32084445184 166867.78209586313 145603.52001535136 140408.14799566183 0.9864120811308518 1.065899052005124 1.1971926245764173 1.0756639440838214 1.1149139145196494 0.9547517688732559 1.1683176737686207 1.1884479959170091 1.0370019268386763 1.0 17.09926713324061 SFSERFPEDGPELEEILTQLATADAR ddPTM_BT-474_Trastuzumab_2h_R1 5 SFSERFPEDGPELEEILTQLATADAR 26 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33;Q9NY33-2 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;;;; 164.96 1.2038e-11 839014000.0 161373.0 228075.0 205664.0 219221.0 208907.0 213031.0 219386.0 180297.0 231767.0 206824.0 False True 160504.1856982258 235666.33850075118 234619.7035364662 246974.35612276473 235510.0681612008 198304.6683910339 208773.46104409354 193751.67766961505 174651.12836868846 193624.31524906505 0.8289464341901699 1.2171319402607372 1.2117264468290951 1.275533787195445 1.2163248601202632 1.024172341867024 1.078239893453163 1.0006577811282955 0.90201030869511 1.0 17.562900611380513 2.1082369284803804 1.3553125400578003 0.9628305769311042 1.1575900493802833 0.2684643705448583 0.12194931322872221 0.5607686376032489 1.9474489109538937 0.08145351512180904 0.0419429445463227 128.30303463840872 -2.1082369284803804 0.19475947244917913 SFSKEELMS(ph)SDLEETAGSTSIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 SFSKEELMS(0.5)S(0.5)DLEETAGSTSIPK;S(0.003)FS(0.003)KEELMS(0.497)S(0.497)DLEETAGSTSIPK 205.81 8.9805e-25 712570000.0 518590.0 620130.0 590490.0 672950.0 627220.0 749420.0 747230.0 689320.0 1132960.0 809700.0 True False 515797.96906076605 640770.6521734993 673625.8593689105 758145.4010008821 707092.7491757974 697614.3593449235 711083.6302041969 740760.5586960352 853757.1888862057 758024.2527809528 0.6804504831718317 0.8453168217543345 0.8886600354772145 1.0001598210340696 0.9328101925257619 0.9203061205305709 0.9380750386223851 0.9772254066785032 1.1262927086488839 1.0 19.531884482209254 5.586772157131826 0.6304241389213756 0.989105579691577 2.1096181593967942e-21 0.7560809559816034 0.05452799508954692 4.519987723891848 0.6160890404357462 0.023564104093061526 4.109218501647707 386164.33143873344 -5.586772157131826 -0.989105579691577 SFSKEELMSS(ph)DLEETAGSTSIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 S(0.066)FS(0.059)KEELMS(0.137)S(0.737)DLEET(0.001)AGSTSIPK;S(0.001)FS(0.006)KEELMS(0.187)S(0.806)DLEETAGSTSIPK 228.47 1.0385999999999999e-32 689720000.0 286980.0 320760.0 321890.0 381030.0 302360.0 474790.0 483680.0 408580.0 648220.0 435520.0 True False 285434.9315664754 331436.3026964857 367209.31408196373 429268.3589321137 340863.75377187255 441968.8848354411 460282.5505629682 439070.31432720117 488474.8667029871 407724.74073256843 0.7000677247439728 0.8128923010680845 0.9006304435246935 1.0528386336351268 0.8360143982418992 1.0839883889345183 1.1289051278467133 1.0768792532391176 1.1980505912526502 1.0 18.63723597663788 4.860505725061638 0.4390770053539008 1.1144799158541627 0.35898574056824506 0.7091468670427984 0.08160006603886663 2.9707707309934626 0.4139090097801069 0.05731750345919591 1.205332441580504 72528.00389899753 -4.860505725061638 -0.7554941752859177 SFSLASSSNS(ph)PISQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFSLASSSNSPISQR 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR 483.24 1.385899999999999e-223 8092800000.0 5344230.0 6046460.0 5770890.0 5952360.0 6374520.0 6344010.0 6114300.0 5815460.0 7335000.0 6612080.0 True False 5315457.259479766 6247712.76593775 6583381.15052491 6705928.16569078 7186277.337259825 5905463.520893213 5818527.950105763 6249439.155507523 5527387.533964403 6190091.3935135035 0.8587041646993689 1.009308646474045 1.0635353716139844 1.0833326584996488 1.1609323482348273 0.9540187931766974 0.9399744818312221 1.009587542125179 0.8929411833493223 1.0 22.561529279570713 SFSQPEAGGSHHK ddPTM_BT-474_Trastuzumab_2h_R1 4 SFSQPEAGGSHHK 13 0 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5;Q8WVV9-3;Q8WVV9-2 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 ;;; 113.35 0.00047945 593490000.0 490674.0 724565.0 758775.0 732719.0 763419.0 873356.0 869840.0 544642.0 921800.0 816230.0 False True 488032.26570300595 748681.7080162079 865603.9246094694 825481.1502726282 860635.8845110767 812982.9553788871 827762.5160885138 585285.951676038 694634.7414871699 764137.5025903395 0.6386707419131137 0.979773542691285 1.1327855545306573 1.0802782843066079 1.1262840543666797 1.0639223341649469 1.0832638278876414 0.7659432362526181 0.9090441695799995 1.0 19.543472741566823 -0.44267320443664904 8.456411811602644 0.9999999992322934 0.9795193010994099 0.001649585986371438 0.15486409956631675 0.0 0.0 0.15696917900239474 0.036997990303292795 0.36085007139783176 0.44267320443664904 -0.020480698132883557 SFSSPPS(ph)PSNK ddPTM_BT-474_Trastuzumab_2h_R1 3 SFSSPPSPSNK 11 0 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 SFSS(0.001)PPS(0.999)PSNK;SFS(0.003)S(0.02)PPS(0.918)PS(0.059)NK;SFSS(0.011)PPS(0.989)PSNK 216.81 1.2385999999999998e-11 1138190000.0 1865130.0 1789880.0 1682550.0 1560580.0 1599520.0 2074810.0 2009500.0 1978320.0 2304210.0 1962140.0 True False 1855088.3473154225 1849455.0737946907 1919438.4150132285 1758149.2679901288 1803209.3909021902 1931383.2682773883 1912292.8079645296 2125952.284105409 1736368.3203321223 1836914.545327431 1.009893656748606 1.006826952565191 1.0449252633421156 0.9571208810242927 0.9816512126211985 1.0514279356055283 1.0410352581881606 1.1573495835792713 0.9452635261389438 1.0 20.808853082055446 2.6466170437416365 5.564980784545808 1.058534325635762 1.0006848017019283 0.058526859965651545 0.0554003531695273 0.38531050958824303 18.47555542844592 0.01828200273145811 0.017215841086106635 443.21764695780854 -2.6466170437416365 -0.05784952393383369 SFSSPPS(ph)PSNKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SFSSPPSPSNKR 12 1 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 SFSSPPS(0.992)PS(0.008)NKR;SFSSPPS(0.554)PS(0.446)NKR;SFSSPPS(0.812)PS(0.188)NKR;SFSSPPS(0.977)PS(0.023)NKR 163.62 6.3033e-05 4688850000.0 3365900.0 3837030.0 3442630.0 3186190.0 3421770.0 4135100.0 3899610.0 3823030.0 4599340.0 3956390.0 True False 3347778.368386645 3964743.2240163824 3927322.3801236167 3589561.327312578 3857512.1270802366 3849250.2699783775 3710970.966343148 4108323.9115529917 3465894.284998479 3703889.802964111 0.9038547436555805 1.0704268849584884 1.0603237647569048 0.9691328625489778 1.0414759434779044 1.0392453541403794 1.0019118180496003 1.1091917227843076 0.9357444387856325 1.0 21.820609745923903 SFSSQRPGMER ddPTM_BT-474_Trastuzumab_2h_R1 1 SFSSQRPGMER 11 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 0 105.38 0.0022554000000000003 176620000.0 96815.0 114870.0 111530.0 105310.0 94903.0 113350.0 119170.0 89809.0 137950.0 115680.0 False True 96293.75879715772 118693.37850961862 127232.45456386174 118642.2352023225 106988.33451584881 105514.38129719939 113405.29182639121 96511.00362086143 103954.07093529511 108297.2033613692 0.8891620079591709 1.0959967092922904 1.174845246366232 1.0955244597262008 0.9879141029971668 0.9743038418556016 1.047167316481638 0.8911680138112225 0.9598961719114592 1.0 16.724636462085 3.14736169332054 5.118511302077002 0.9690151295130341 1.0738423435294409 0.23213358770817982 0.07656046753122621 0.2753347276904792 11.922308875065474 0.02307604282043436 0.02799175432886663 1403.9824960404353 -3.14736169332054 0.10482721401640671 SFSSQRPVDR ddPTM_BT-474_Trastuzumab_2h_R1 3 SFSSQRPVDR 10 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 0 ;; 113.69 0.0013271 592550000.0 383528.0 537151.0 504662.0 505064.0 499093.0 520126.0 513543.0 438022.0 605280.0 521729.0 False True 381463.1278619664 555029.746320363 575714.0229992615 569005.0506146218 562649.5351940254 484170.9138649064 488700.9631652293 470709.42587064824 456116.8543364655 488431.8085453306 0.7809956706096945 1.1363505337078217 1.178698874493614 1.164963134381559 1.1519510509967263 0.9912763775702607 1.0005510587459492 0.9637157483099555 0.9338393740057451 1.0 18.897797631634173 2.6170321405627215 5.883137059861365 0.9746757654572109 1.0951797541374912 0.18408555723091446 0.10892623379312565 0.37303891258844984 16.494769524221667 0.03603037456660166 0.03385612039973338 414.03031457098916 -2.6170321405627215 0.12050398868028034 SFVTHAVHDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SFVTHAVHDHR 11 0 Q15911;E5RI93;Q86UP3-3;E7EVZ1;Q86UP3;Q86UP3-4;Q86UP3-2;Q86UP3-5 Q15911;E7EVZ1 ZFHX3;ZFHX4 Zinc finger homeobox protein 3;Zinc finger homeobox protein 4 0 72.652 0.026433 34353000.0 49760.0 60518.0 59988.0 60633.0 60668.0 55631.0 62938.0 55743.0 81330.0 72370.0 False True 49492.097688855734 62532.30504609644 68433.7889749568 68309.13158315844 68393.71019259155 51785.35991128801 59893.44849349173 59902.8257172186 61287.311266165656 67751.28464092588 0.730496815686348 0.9229685514822421 1.0100736736970837 1.0082337470822742 1.009482116170497 0.7643450627651497 0.8840193778010293 0.884157784382935 0.9045926079628077 1.0 16.04796068140374 2.7762432067286125 24.990666728490545 0.8804313908264262 0.9436133480570128 0.058798222778124076 0.09335928619769743 1429.5933637187698 948087.1533372796 0.028968154027791678 0.03072471187310388 597.3697224786102 -2.7762432067286125 0.06318195723058662 SGAFGHLFRPDNFIFGQSGAGNNWAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGAFGHLFRPDNFIFGQSGAGNNWAK 26 1 Q13509;A0A0B4J269;Q13509-2;G3V2A3;G3V542 Q13509 TUBB3 Tubulin beta-3 chain 0 ; 248.79 6.7587999999999994e-46 6955400000.0 1685930.0 1809360.0 1776330.0 1695940.0 1943170.0 2142470.0 2189240.0 1976970.0 2297690.0 2063570.0 False True 1676853.1402044313 1869583.4538187836 2026421.8238628546 1910645.830111355 2190621.1814290616 1994366.091731898 2083338.097491051 2124501.5402502473 1731455.0869685991 1931871.1958888397 0.8679942761054127 0.9677578183252544 1.0489425113719928 0.9890130533429694 1.1339374933954502 1.032349411273408 1.0784042445089217 1.0997117948501633 0.89625803762345 1.0 20.881567477552178 4.6931137769946965 1.5385211222190411 1.0473107186373918 0.8072156259889062 0.388338979925099 0.0633012508044378 0.9073178990706111 2.1568344656156593 0.01635197407264729 0.321427772173996 49330.302315154186 -4.6931137769946965 -0.2400950926484856 SGAGS(ph)SPETK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGAGSSPETK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SGAGS(0.735)S(0.265)PETK 110.08 0.0027326 0.0 231900.0 167130.0 150360.0 150910.0 153420.0 163900.0 194950.0 193240.0 306420.0 220410.0 True False 230651.47616651206 172692.82101778153 171529.38104745134 170015.19052684892 172957.12760841625 152569.9787790997 185519.52371867857 207660.55005283732 230906.8968176377 206343.24509750548 1.1178048307688482 0.836920156684447 0.8312817847097288 0.8239435724998407 0.8382010640895322 0.7393989500698424 0.8990821271179152 1.0063840469054819 1.1190426742999262 1.0 17.654686685140177 1.6924530360542864 3.0593602541422804 1.0591161001904619 0.8568973311390236 0.40797788675633406 0.09620572905356115 0.20020487512888296 4.247703351467256 0.05770395792990682 0.0258423305071268 49.25530765278731 -1.6924530360542864 -0.20221876905143832 SGAGSS(ph)PETK ddPTM_BT-474_Trastuzumab_2h_R1 8 SGAGSSPETK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SGAGS(0.001)S(0.999)PETK;SGAGS(0.019)S(0.981)PETK;SGAGS(0.013)S(0.987)PET(0.001)K;SGAGS(0.027)S(0.973)PETK;SGAGS(0.004)S(0.996)PETK;SGAGS(0.195)S(0.805)PETK;SGAGS(0.018)S(0.982)PETK;SGAGS(0.009)S(0.991)PETK 244.42 2.2647e-08 535097000.0 8314430.0 6164568.0 5226485.0 5096779.0 5235030.0 5503962.0 7156900.0 6994190.0 10503770.0 7444260.0 True False 8269666.032700023 6369751.9193199575 5962328.658578001 5742030.698815476 5901680.040046199 5123486.061872919 6810693.404986985 7516131.973577193 7915256.626807007 6969160.953448367 1.1866085584675958 0.9139912195840706 0.8555303426631032 0.8239199434724345 0.8468279150772124 0.7351654088772047 0.9772616030078956 1.0784844866953722 1.135754602265357 1.0 22.73255354375875 1.9592836240693083 4.73907780881372 1.0717780585391234 0.8851328645745462 0.3250787779681631 0.11409262999687925 0.23876913288107876 12.232485257978752 0.05242911265595397 0.032079652801459434 91.05077024580648 -1.9592836240693083 -0.18664519396457724 SGAHSS(ph)ASPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGAHSSASPPR 11 0 P18615;P18615-3;A0A0A0MT02;E9PD43;A0A0A0MSN9;P18615-4;A0A0G2JI50 P18615 NELFE Negative elongation factor E 1 SGAHS(0.053)S(0.632)AS(0.316)PPR 53.00100000000001 0.090676 1456500000.0 15266.0 21429.0 17987.0 23308.0 19941.0 14688.0 17776.0 15419.0 15501.0 18774.0 True False 15183.809552212057 22142.25131089595 20519.413254193307 26258.790410176924 22480.368150432994 13672.653131832933 16916.10696908558 16569.64407609553 11680.986252758326 17575.827246769943 0.86390298101061 1.2598127530506547 1.1674792296313865 1.494028704395847 1.2790503590415296 0.7779237324004576 0.9624643398901406 0.9427518741196477 0.664605203997157 1.0 14.1013049742086 2.7438084254874457 24.796274861334314 0.880211754880766 1.2285634992740748 0.5001400371825073 0.171079171972211 332.24877623643397 1569900.166233595 0.05323849564519532 0.054943321325645486 554.381112292493 -2.7438084254874457 0.34835174439330885 SGAHSSAS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGAHSSASPPR 11 0 P18615;P18615-3;A0A0A0MT02;E9PD43;A0A0A0MSN9;P18615-4;A0A0G2JI50 P18615 NELFE Negative elongation factor E 1 SGAHSS(0.022)AS(0.977)PPR;SGAHSS(0.011)AS(0.989)PPR;SGAHSS(0.048)AS(0.952)PPR;SGAHS(0.016)S(0.347)AS(0.637)PPR;SGAHSS(0.014)AS(0.985)PPR;SGAHSSAS(1)PPR 134.04 9.6025e-05 933228000.0 130909.0 164214.0 157398.0 168996.0 166837.0 161532.0 172084.0 150836.0 194437.0 183167.0 True False 130204.20048935732 169679.76372054056 179558.27027205878 190390.87627244965 188082.70302962666 150365.67304542763 163759.63949528144 162092.1482496884 146520.60667231595 171477.1252428417 0.7593094431981253 0.9895183598409657 1.0471266649576307 1.1102989742965585 1.0968384428142737 0.876884732190859 0.9549940801921485 0.9452698021391337 0.8544615292845449 1.0 17.387656610602978 2.7210107482987103 24.87347651383041 0.9272497843868135 1.0086788786559024 0.12265963910785249 0.09815857771948829 1654.6218790858027 2345096.58285356 0.032906816246204805 0.0310898750187024 526.0302848860005 -2.7210107482987103 0.08142909426908895 SGAMS(ph)PMSWNSDASTSEAS ddPTM_BT-474_Trastuzumab_2h_R1 1 SGAMSPMSWNSDASTSEAS 19 0 Q13158 Q13158 FADD FAS-associated death domain protein 1 S(0.001)GAMS(0.999)PMSWNSDASTSEAS 234.69 4.0275999999999985e-24 63445000.0 87330.0 82107.0 99932.0 90503.0 84261.0 100930.0 98438.0 89051.0 94601.0 98372.0 True False 86859.82498327506 84839.88186027028 114001.55697548472 101960.67052051835 94991.13889592476 93952.9466636641 93676.17787032208 95696.43781181547 71287.85113845485 92093.81473949364 0.9431667612963585 0.9212332239712016 1.2378850555595038 1.107139179856271 1.0314605727282207 1.0201873701228406 1.01718207824602 1.0391190557423708 0.7740785995249219 1.0 16.49081664396255 1.3093276084250103 12.07864641736765 0.8871916382051817 1.042423072215904 0.2842376537406621 0.09680612058009211 0.7247765816007113 120.97940018412135 0.06491334722628396 0.0237325933835811 20.385792925338638 -1.3093276084250103 0.15523143401072237 SGAQASST(ph)PLSPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 SGAQAS(0.011)S(0.26)T(0.729)PLSPTR 200.46 2.1476e-07 213620000.0 307780.0 271640.0 227450.0 284260.0 213060.0 295880.0 225490.0 232970.0 352550.0 268690.0 True False 306122.9466775729 280681.37319015263 259472.9829691595 320247.28685416584 240191.92809444127 275426.5120266023 214582.1872445495 250355.40439768956 265668.77642796864 251541.97416291753 1.2169855456382188 1.115843087914871 1.03152956413193 1.2731365726133228 0.9548781228013854 1.094952494283182 0.8530671191503408 0.9952828160422266 1.056160814957672 1.0 17.9404396333702 3.2152819564222974 24.99382096657836 0.987535617634113 1.1471326911510416 0.483448350092601 0.0840898618136934 200.3888349280002 215152.77733933568 0.023706066212060586 0.028350254045467895 1641.6552369185283 -3.2152819564222974 0.15959707351692853 SGAQASSTPLS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 8 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 SGAQASSTPLS(1)PTR;SGAQASSTPLS(0.988)PT(0.012)R;SGAQASSTPLS(0.797)PT(0.203)R;SGAQASSTPLS(0.997)PT(0.003)R;SGAQASSTPLS(0.991)PT(0.009)R;SGAQASSTPLS(0.925)PT(0.075)R;SGAQAS(0.007)S(0.004)T(0.003)PLS(0.886)PT(0.1)R;SGAQAS(0.005)S(0.006)T(0.003)PLS(0.968)PT(0.018)R 243.1 1.702e-17 23346997000.0 3325827.0 3734374.0 3289691.0 3428392.0 3131256.0 3438729.0 3570110.0 3171624.0 4098233.0 3518510.0 True False 3307921.116966117 3858670.3811132447 3752850.898293234 3862426.0756790508 3530002.8911916274 3201017.758127366 3397410.1401553843 3408306.6880603456 3088278.3906586994 3293955.6794520365 1.0042397162782724 1.1714396781911622 1.139314327057836 1.1725798558168765 1.0716607127448838 0.9717853151745712 1.0314073626881821 1.0347154059545003 0.9375591814800761 1.0 21.651389712893323 2.9739620230040202 4.917537408727931 1.0041965570970528 1.1267276850318837 0.5725209350482732 0.05149545157646188 0.14104599791122477 9.00281186041498 0.01537167439243717 0.01711173630747108 941.807236338699 -2.9739620230040202 0.1225311279348309 SGAVQGAGSLGPGS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGAVQGAGSLGPGSPVR 17 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR 288.3 5.6667e-37 711030000.0 488100.0 470590.0 424080.0 436240.0 445110.0 563280.0 568120.0 468280.0 580240.0 616440.0 True False 485472.1238330081 486253.30367233825 483786.77783056104 491467.9392713047 501792.12012633466 524341.7794184946 540637.8651708432 503225.43147765804 437247.62681765587 577098.2714391638 0.8412295580479577 0.8425831920440916 0.8383091784768247 0.8516191497952077 0.8695089640018654 0.908583174423473 0.9368211480214697 0.8719926161322885 0.7576658057340054 1.0 19.138457484202 3.1514130202986 2.7609381154939987 0.889380052266871 0.8419161795807412 0.14985965744156138 0.05711006765015376 0.5808210533825333 8.985027243082312 0.0172705670810496 0.021836878135820883 1417.14086064973 -3.1514130202986 -0.04746387268612984 SGCSEAQPPES(ph)PETR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGCSEAQPPESPETR 15 0 Q9Y6A5;A0A494BZT8;A0A494C117;H0Y8F2 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 1 SGCSEAQPPES(0.994)PET(0.006)R;SGCSEAQPPES(0.994)PET(0.006)R 208.85 2.8149000000000003e-09 315020000.0 302380.0 301130.0 272800.0 270210.0 292230.0 335160.0 332230.0 265650.0 358690.0 324400.0 True False 300752.0196775762 311152.9300130713 311207.86877989286 304418.5582947443 329443.75831708696 311991.1780817765 316158.7656581518 285474.1519433672 270295.65569975344 303696.51426718687 0.9903044834191934 1.024552194034484 1.0247330942563853 1.0023775183238428 1.0847795178421051 1.0273123444785148 1.0410352137924141 0.939998118293225 0.8900189597235616 1.0 18.21227082423852 1.69061108199904 5.447311363754433 0.935338129868917 1.0287799001118514 0.5562467160212595 0.03433384913616258 0.09627599484429536 6.540959578737304 0.017279685434646194 0.00857441064797444 49.04684566895941 -1.69061108199904 0.09344177024293443 SGDAAIVDMVPGKPMCVESFSDYPPLGR ddPTM_BT-474_Trastuzumab_2h_R1 11 SGDAAIVDMVPGKPMCVESFSDYPPLGR 28 1 P68104;A0A087WVQ9;Q5VTE0 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 ;;;;;;;;;; 277.82 1.1594999999999996e-61 16560310000.0 6311877.0 5963897.0 5889059.0 5802126.0 5865897.0 6829911.0 6804709.0 6575830.0 8275455.0 7078367.0 False True 6277894.555547456 6162401.7063931385 6718187.318581554 6536674.55669462 6612884.213054535 6357775.328451135 6475539.229157249 7066551.825988155 6236080.000665766 6626619.557965131 0.9473751285452158 0.9299465062825273 1.0138181707604386 0.986426714181532 0.9979272470993018 0.9594296568314613 0.9772009955473777 1.0663886411728933 0.9410650401938436 1.0 22.65984166429425 4.243596661877341 24.99701466955737 0.9967442048643923 0.9386607976124667 0.3071851621139612 0.032072857142627004 137.4654347137092 682303.7409425671 0.00807899782563203 0.020740790236993163 17522.5239347627 -4.243596661877341 -0.05808340725192562 SGDAAIVEMVPGKPMCVESFSQYPPLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGDAAIVEMVPGKPMCVESFSQYPPLGR 28 1 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ; 178.42 1.5390999999999998e-17 2567800000.0 1149940.0 1186940.0 1000460.0 1052970.0 1049190.0 1204520.0 1216580.0 1118450.0 1510050.0 1301920.0 False True 1143748.8508103443 1226446.5803796172 1141316.071845791 1186275.8940365545 1182798.1274636572 1121254.3675350917 1157729.3776130814 1201914.4183740227 1137918.411133326 1218830.350970209 0.9383987278458412 1.0062488018971183 0.9364027331098906 0.9732904116575857 0.9704370477172072 0.9199429326998254 0.9498691730900117 0.9861211754509387 0.9336150927219067 1.0 20.217065900494205 -1.3365964645011732 4.89057504192061 1.0000231100556778 0.9594279698318433 0.19793905855617278 0.02550925038597342 6.0803548313523975e-06 8.248095455401437e-07 0.02336449409608888 0.005503929349677516 0.04606844311486077 1.3365964645011732 -0.04059514022383448 SGDEEFKGEDELCDS(ph)GR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGDEEFKGEDELCDSGR 17 1 O43823;M0QYL4 O43823 AKAP8 A-kinase anchor protein 8 1 SGDEEFKGEDELCDS(1)GR 188.47 1.0767e-09 442810000.0 420220.0 270400.0 215820.0 193890.0 209790.0 328970.0 294220.0 293990.0 484710.0 299620.0 True False 417957.58221083117 279400.1005397482 246205.58005893158 218436.45412001028 236505.5129772497 306229.07821208314 279987.4545704525 315929.0266509709 365259.7152812386 280497.99508241226 1.4900555067712065 0.9960859094827345 0.8777445271457097 0.7787451530832944 0.8431629356486584 1.0917335723633637 0.998179878213355 1.1263147408884286 1.3021829805732579 1.0 18.09763093334575 1.6672410418557182 3.7073851080856053 1.16884859630089 0.9920974258758378 0.08031348759658274 0.1962874685864782 0.40727350235548077 13.157302691330402 0.11677711308601163 0.05331735020462698 46.477316176394716 -1.6672410418557182 -0.17675117042505228 SGDET(ph)PGSEVPGDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 SGDET(1)PGSEVPGDK;SGDET(1)PGSEVPGDK;SGDET(1)PGSEVPGDK;SGDET(1)PGSEVPGDK 300.9 8.173399999999999e-43 2020960000.0 3366440.0 2834060.0 2438940.0 2191310.0 2516910.0 3394350.0 3063410.0 2857050.0 4194400.0 3195340.0 True False 3348315.461086647 2928389.9738745554 2782321.552353488 2468729.621319923 2837423.5696056527 3159706.5739404396 2915221.154937359 3070257.5788059374 3160746.3220804813 2991410.665531794 1.119309862623427 0.9789327849955917 0.9301035074897896 0.8252727215843659 0.9485235853102882 1.056259713969672 0.9745305746642143 1.026357769657857 1.0566072918372054 1.0 21.512394548807535 2.757370810507123 23.505552012834354 1.0204975728509844 0.9522631207702943 0.15651233186606694 0.07099139466334416 707.2279709158956 883762.3171565853 0.022882120250969144 0.024222263232897334 571.9667864977829 -2.757370810507123 -0.06823445208069012 SGDGEGTPVEHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGDGEGTPVEHVR 13 0 Q7L576;Q7L576-2;Q7L576-3 Q7L576 CYFIP1 Cytoplasmic FMR1-interacting protein 1 0 ; 132.79 0.00011472 1146750000.0 615970.0 742970.0 724570.0 705950.0 685840.0 731330.0 717270.0 647580.0 788010.0 735470.0 False True 612653.6859607002 767699.3073151503 826583.157924659 795323.1976173164 773177.6587078357 680774.8784656448 682572.9098625121 695905.7079446107 593815.4942930188 688531.6749324542 0.8897973880733986 1.1149803781946015 1.2005012812311762 1.155100377474048 1.1229369495363961 0.9887342924817941 0.9913456921636515 1.0107097948876207 0.8624374388458931 1.0 19.393163499482363 2.6955513337630155 5.654383457963794 0.9753340784642135 1.106759256365206 0.3474314108282146 0.08573878614521856 0.2369792927694544 19.74898435304939 0.028534735800748567 0.027240976518322572 496.0795607120849 -2.6955513337630155 0.1314251779009925 SGDLGDMEPLKGT(ph)TPLMQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGDLGDMEPLKGTTPLMQK 19 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-27;O60716-29;O60716-32;O60716-31 O60716-13 CTNND1 Catenin delta-1 1 SGDLGDMEPLKGT(0.5)T(0.5)PLMQK;SGDLGDMEPLKGT(0.5)T(0.5)PLMQK 147.67 1.6674e-07 345340000.0 741850.0 540150.0 525410.0 463960.0 477810.0 844760.0 752880.0 718630.0 1124560.0 726790.0 True False 737855.9620272832 558128.5662224296 599383.1610544116 522697.28842910915 538656.2712982491 786363.729551143 716460.3181191011 772257.8197292008 847427.2563319715 680405.6399637762 1.084435399545726 0.8202879774073354 0.8809203302405338 0.7682142206477547 0.7916693214461397 1.155727823762613 1.0529899754464769 1.1349962057491392 1.2454735918665918 1.0 19.37603557415952 2.7337954565207268 24.988427575501852 1.1213632453336135 0.8614446795256482 0.6031495372850537 0.10076342177245791 264.32989558366904 1386137.671491794 0.031661119037538606 0.03074819178004588 541.7456795951125 -2.7337954565207268 -0.25991856580796535 SGDPMILSCLMEHLYTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGDPMILSCLMEHLYTEK 18 0 Q92896;Q92896-3;Q92896-2;H3BM42 Q92896 GLG1 Golgi apparatus protein 1 0 168.89 1.9589e-11 98304000.0 156020.0 186710.0 220220.0 168240.0 170060.0 227750.0 229760.0 192120.0 273240.0 204570.0 False True 155180.0056554515 192924.52948142172 251225.0618134461 189539.16674996412 191716.1329754093 212006.17856583258 218645.63103156514 206456.9699655928 205903.66322841638 191514.16745881175 0.8102795094197169 1.0073642699196825 1.3117831706496397 0.9896874433100498 1.001054572198378 1.1069999748787671 1.1416681801287023 1.078024527924258 1.0751354114452099 1.0 17.547091595394047 4.653985689144249 3.9705060730904895 1.0904912075319007 0.8047132602836372 0.46281605401181547 0.08957578802489426 0.17869056458009733 4.6828721632606385 0.02100805197665872 0.11823642429044866 45080.18494907908 -4.653985689144249 -0.28577794724826344 SGEDGEKDTK ddPTM_BT-474_Trastuzumab_2h_R1 5 SGEDGEKDTK 10 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;; 121.08 0.00047845 2871290000.0 6513420.0 3690040.0 3090520.0 2714220.0 3090110.0 3402330.0 4561860.0 5015540.0 8942120.0 5263030.0 False True 6478352.47042899 3812860.7507237145 3525638.3527186033 3057839.9737047506 3483617.191983075 3167134.9353233376 4341185.403802474 5389825.063196068 6738454.344269103 4927138.919493325 1.3148304880949413 0.7738488427104881 0.7155548910484458 0.6206116822902974 0.7070263795893352 0.6427939189603822 0.8810763152277618 1.0939056420496303 1.367620124857783 1.0 22.232318717986388 1.7245882248297018 2.9125312508437986 1.1931586792160918 0.7795073429538263 0.3829439919506398 0.20313500167650636 0.22193854164417431 4.0462053783438705 0.12179702766857564 0.055667116334065264 53.03813260948169 -1.7245882248297018 -0.41365133626226547 SGEGEVSGLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGEGEVSGLMR 11 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 200.56 1.0799000000000003e-07 1187580000.0 620020.0 724580.0 661720.0 624530.0 599960.0 672430.0 748400.0 634440.0 856330.0 614520.0 False True 616681.8812106976 748697.2072821409 754884.4242266534 703595.4339654963 676361.3497584758 625946.496829958 712197.032834364 681785.134421042 645298.9457341153 575300.8074829589 1.0719294553205794 1.3014012800674162 1.3121560310846843 1.223004426230251 1.1756655665367033 1.0880334056344938 1.2379559068417614 1.1850933034562747 1.1216722405751705 1.0 19.133956969603936 -0.23764538616223332 0.314992158600168 0.93582045204755 1.2315814692452631 0.40621787327900805 0.07419351348312986 6.78549207272762 0.8542630693952541 0.5740626423079038 0.08200158411184778 0.5785682720915559 0.23764538616223332 0.2957610171977131 SGEHDFGAAFDGDGDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGEHDFGAAFDGDGDR 16 0 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 ;;; 167.71 6.2302e-09 2209200000.0 1429100.0 1609950.0 1407920.0 1423310.0 1314580.0 1886440.0 1758350.0 1465240.0 1739260.0 1682060.0 False True 1421405.8843879357 1663536.2125146717 1606142.898139981 1603500.9000647385 1481983.9708738865 1756034.8430021042 1673291.8929506976 1574583.6491379626 1310642.6778899701 1574709.4907159815 0.9026464200337407 1.0564083231366714 1.0199614008865265 1.0182836323261546 0.9411157928565382 1.1151484469707988 1.0626035486646448 0.9999200858451919 0.8323076006191169 1.0 20.586654267802626 1.4204163725788914 10.924033949301736 0.9157946681411477 1.0198479492481454 0.2528108662580246 0.06800398858444982 0.6003244600991241 111.30891909594887 0.04114706483356278 0.0158220048801316 26.32790926606981 -1.4204163725788914 0.10405328110699763 SGEISLPIKEEPS(ph)PISK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGEISLPIKEEPSPISK 17 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5;I3L2A0 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 SGEISLPIKEEPS(0.954)PIS(0.046)K;SGEISLPIKEEPS(0.999)PIS(0.001)K 121.25 3.687e-05 386650000.0 681580.0 565050.0 491770.0 509640.0 449770.0 578560.0 511920.0 436850.0 796400.0 476150.0 True False 677910.4490106563 583857.3476700626 561006.9414585334 574160.371745434 507045.54350435006 538565.508983746 487156.4738756915 469449.9652793524 600137.891213259 445761.699347476 1.520791153665757 1.309797025012998 1.2585355410295636 1.28804330337468 1.1374811793982835 1.208191528729633 1.0928630131050083 1.0531410975114108 1.346320000331489 1.0 18.765913137388793 7.999999999999892 0.35978625624399746 1.1054770281231883 6.0618701536686155 0.6194937471116159 0.09148184988562745 39.71131950002494 0.5559477618883464 0.07048634870579243 134.72340760976533 99999999.99997506 -7.999999999999892 4.956393125545427 SGEIWAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGEIWAR 7 0 Q12996;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 ;; 98.418 0.026236 818710000.0 2675270.0 1347440.0 879210.0 963330.0 969160.0 1652550.0 1737120.0 1566940.0 3773810.0 1396040.0 False True 2660866.643570442 1392288.7258553207 1002995.1257696833 1085287.4792275499 1092576.7813386319 1538313.108184267 1653088.8691571753 1683873.0195600956 2843805.0919632185 1306943.5319900238 2.035946143379937 1.0653013628946506 0.7674357010990888 0.8304012014773368 0.8359785672415507 1.1770310426816584 1.264851027373839 1.288405335306368 2.17592039927929 1.0 20.317765378492826 1.5233436878105597 3.9067767587987867 1.6253526316015119 1.1044737630220944 0.13143615457878788 0.43300646770656864 0.3031352012761025 10.083876215692303 0.27388038087533945 0.11050536417783008 33.36903810011756 -1.5233436878105597 -0.5208788685794175 SGELAQEYDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGELAQEYDKR 11 1 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 142.97 5.9978e-05 360070000.0 285710.0 247160.0 258310.0 210150.0 216360.0 279550.0 260030.0 273730.0 380630.0 297720.0 False True 284171.76910536503 255386.57118862498 294677.80272923067 236754.9684528353 243912.1635338091 260225.3664899171 247451.35548893583 294157.1225727759 286828.83668069186 278719.2547090843 1.0195627474749525 0.9162860723604725 1.0572567117288085 0.8494388688716552 0.8751177373389384 0.9336468941176298 0.887815790650041 1.0553885948059276 1.0290958799386574 1.0 18.088453145747472 1.7133379008124447 8.942251540879537 1.0304533786617558 0.9327246832932465 0.3316728639053085 0.06099587090913775 0.12524447856875726 24.303036114265566 0.02944071348318041 0.01575307000014693 51.68183209871173 -1.7133379008124447 -0.09772869536850926 SGELTALEFSAS(ph)PGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGELTALEFSASPGLR 16 0 A0A2R8YF49;H0Y895;Q12774-2;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 SGELTALEFS(0.036)AS(0.964)PGLR;SGELTALEFSAS(1)PGLR 198.95 4.1327e-11 82590000.0 133485.0 134468.0 125180.0 124334.0 134616.0 158335.0 141034.0 130772.0 169867.0 147715.0 True False 132766.33159157756 138943.6860923776 142804.2559159346 140074.67165174775 151758.54966845614 147389.67413049904 134211.64661780026 140530.87068676075 128005.55395118365 138287.70223482596 0.9600733069244829 1.0047436167276662 1.0326605591684435 1.0129221137385545 1.0974117525704157 1.0658190985068003 0.9705248149245826 1.01622102627843 0.9256466907940792 1.0 17.077313339430702 1.7983216327072502 1.8747325442783154 0.972578662896457 1.0282871948556132 0.21237468695242623 0.04218284725154075 0.5209472418923458 3.556790859621974 0.029837734532879648 0.012816078579597621 62.852366274399635 -1.7983216327072502 0.05570853195915615 SGEQAEGS(ph)PGGPGDSQGR ddPTM_BT-474_Trastuzumab_2h_R1 7 SGEQAEGSPGGPGDSQGR 18 0 P38936 P38936 CDKN1A Cyclin-dependent kinase inhibitor 1 1 SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR 307.63 2.3410999999999993e-51 999263800.0 566042.0 621009.3 608470.4 574475.5 646903.6 796560.6 755492.7 664752.6 852597.9 703140.0 True False 562994.4927651781 641679.2191424513 694137.7434004736 647204.0393977006 729282.9389619604 741496.24062396 718946.6318386177 714359.8145573061 642486.5717715389 658265.0032115596 0.8552702787151476 0.9748037887656351 1.0544958945316814 0.9831967919304618 1.1078865432674025 1.1264403196377293 1.0921841937988548 1.0852161531785371 0.9760302744896957 1.0 19.32830897306629 5.184271899657048 0.9306567150472579 1.0682805059709595 0.5362635955063759 0.5922607015844525 0.05038653786958057 2.7815506171803697 1.0743692352180694 0.01581921718936915 1.8166592188120712 152852.27241632997 -5.184271899657048 -0.5320169104645835 SGES(ph)S(ph)SQLSQEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGESSSQLSQEQK 13 0 Q6ZMI0-4;Q6ZMI0-3;Q6ZMI0-5;Q6ZMI0-2;Q6ZMI0 Q6ZMI0-4 PPP1R21 Protein phosphatase 1 regulatory subunit 21 2 S(0.254)GES(0.483)S(0.527)S(0.483)QLS(0.254)QEQK 81.709 0.020952 271300000.0 206640.0 460950.0 424190.0 493940.0 418400.0 377280.0 393840.0 308710.0 221760.0 468150.0 True False 205527.47319986214 476292.4420998414 483912.2648744233 556472.7533551904 471680.75994890777 351199.52162159095 374788.4545850959 331747.50779761706 167110.21943175828 438272.26619662065 0.4689493017284763 1.0867501296241362 1.1041361778920487 1.2696964792783438 1.0762277158037172 0.801327276921587 0.8551498314907195 0.7569438757249273 0.3812931648218602 1.0 18.741467862661615 2.3039729882110125 1.657961678314177 0.7054131034877215 1.0200033559414534 0.1889380458559723 0.24455153667207208 0.5628234666230664 3.114218827394847 0.12559774403418794 0.08257380465491733 201.35990062656157 -2.3039729882110125 0.31459025245373196 SGEWTEDEVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGEWTEDEVLR 11 0 Q13938-4;Q13938 Q13938-4 CAPS Calcyphosin 0 ; 196.52 1.4007e-07 663290000.0 581400.0 553150.0 470920.0 475970.0 428020.0 571400.0 598340.0 454930.0 630550.0 600350.0 False True 578269.8069996132 571561.2633637638 537221.4426899827 536227.7531976965 482525.8099266997 531900.4629309198 569396.0083192321 488879.1866877326 475159.4014371174 562035.1490145059 1.028885485211332 1.0169493213475373 0.9558502588885543 0.9540822386961721 0.8585331553956705 0.9463829154877139 1.0130967953118823 0.86983738925395 0.8454264867068906 1.0 19.10030083214856 4.112848344246197 1.6466693420131853 0.9206316031158882 1.033498085345536 0.3366731827908098 0.0533859556546274 0.4732175659322492 2.3666539955816632 0.01524255642964928 0.05835349406505588 12967.263747023038 -4.112848344246197 0.11286648222964779 SGEWTEDEVLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGEWTEDEVLRR 12 1 Q13938-4;Q13938 Q13938-4 CAPS Calcyphosin 0 194.39 2.5369e-06 364610000.0 93739.0 161020.0 151120.0 178710.0 186910.0 153800.0 163730.0 140990.0 138800.0 165870.0 False True 93234.31963938198 166379.45336135465 172396.38244141272 201334.66767645106 210711.88059763476 143168.1680062573 155809.75439066073 151511.38973271352 104594.59982471165 155284.03459154864 0.6004114968072595 1.0714524116982846 1.1102003042030402 1.2965574226998398 1.356944911638088 0.9219760961443312 1.0033855367069442 0.9757048761081041 0.6735695662456997 1.0 17.244549982206912 1.7968144184935946 1.5841468916687467 0.8529429384557146 1.0858604658487865 0.12904150776479717 0.20982856967005437 0.7206465118875536 3.4677110603265473 0.1600965755902685 0.06595595818531849 62.634615898551786 -1.7968144184935946 0.23291752739307192 SGFEPPGDFPFEDYSQHIYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGFEPPGDFPFEDYSQHIYR 20 0 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 0 ;;; 199.15 1.4849e-21 561432000.0 646580.0 801550.0 754620.0 752480.0 798310.0 875830.0 860030.0 730690.0 851790.0 829380.0 False True 643098.8851217906 828229.1072027928 860863.9367253769 847743.8908464871 899970.0465459178 815285.9335820553 818427.063266352 785217.7981686384 641877.7679012334 776448.2583320576 0.8282572318511937 1.066689374745935 1.1087202881678921 1.0918227734422183 1.1590856659002697 1.0500196566007212 1.0540651672327426 1.011294429142541 0.8266845356573992 1.0 19.56653026262324 1.4492274827047187 4.713249163604172 0.9119845382054996 1.0579941951108431 0.2599284724253226 0.09072811011704583 0.23574766618155824 10.172013124799003 0.05983060350796367 0.0228662278804851 28.133740850413723 -1.4492274827047187 0.1460096569053435 SGFGEISS(ph)PVIR ddPTM_BT-474_Trastuzumab_2h_R1 5 SGFGEISSPVIR 12 0 P57740;G3V1T4 P57740 NUP107 Nuclear pore complex protein Nup107 1 SGFGEIS(0.021)S(0.979)PVIR;SGFGEIS(0.004)S(0.996)PVIR;SGFGEISS(1)PVIR;SGFGEIS(0.01)S(0.99)PVIR;SGFGEIS(0.023)S(0.977)PVIR 263.2 1.9413e-21 522020000.0 1288520.0 1444550.0 1230000.0 1302480.0 1302050.0 1427700.0 1424670.0 1223270.0 1632720.0 1482310.0 True False 1281582.751488031 1492630.973501086 1403173.3086483455 1467373.8344537155 1467858.3496450167 1329006.4594443007 1355753.2693320864 1314556.619039198 1230358.033327111 1387707.7067305623 0.9235249939682459 1.0756090538819034 1.0111447114134864 1.057408435030491 1.0577575829014376 0.9576991271277425 0.9769732219231091 0.9472863865087928 0.8866118040274008 1.0 20.404272293971232 2.676484711852677 7.37747259386034 0.9518682901360617 1.0288500631004935 0.35993916201330367 0.047434197017897535 0.2865206077472198 30.128280035628144 0.014771371110832774 0.013941322388931454 474.77157761485046 -2.676484711852677 0.07698177296443187 SGFSLDNGELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGFSLDNGELR 11 0 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 ; 102.53 0.0066443 222240000.0 347950.0 391650.0 357130.0 384660.0 366430.0 389230.0 374940.0 323070.0 455890.0 392200.0 False True 346076.67586087954 404685.8334925758 407410.79977039335 433357.9165599219 413092.688499231 362323.44624886545 356802.7197901075 347179.1239162188 343542.0181130244 367169.4602206866 0.9425529989691155 1.1021772705424357 1.1095988199168845 1.1802667800841955 1.1250736601321425 0.9868016965002795 0.9717657878616914 0.9455555582088645 0.935649762119483 1.0 18.486086540213396 2.6290209224075616 4.375763220047344 0.9601262788802121 1.0981188928581485 0.5267611195037902 0.05877691521920178 0.18022792874020355 5.739270978394909 0.020236214438083575 0.01899858501972488 425.61891709665906 -2.6290209224075616 0.13799261397793638 SGFSSPS(ph)PSQTSSLGTAFTQHHRPVITGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGFSSPSPSQTSSLGTAFTQHHRPVITGPR 30 1 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2;B1AKN6 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 S(0.001)GFS(0.015)S(0.076)PS(0.452)PS(0.452)QT(0.004)SSLGTAFTQHHRPVITGPR 118.74 3.4291e-05 387880000.0 91507.0 113530.0 106550.0 118180.0 127220.0 119490.0 137500.0 90629.0 87650.0 112150.0 True False 91014.33647938342 117308.7774196658 121551.31385079768 133141.57588273176 143420.71290798264 111229.93754920455 130848.59969899117 97392.1961847371 66049.83194982696 104992.49098355434 0.8668651979467712 1.1173063551567763 1.1577143537801866 1.2681056962786663 1.36600924089369 1.0594085015720527 1.2462662660274137 0.9276110631568145 0.6290910076623744 1.0 16.67992662510752 1.5713031522810303 4.536498877220883 0.8036930512564876 1.1609851515428034 0.462529583241991 0.15174782662900282 0.13016563892252797 5.910587106804424 0.08802566948040298 0.03895142343254806 37.26517390435509 -1.5713031522810303 0.35729210028631575 SGGGDLTLGLEPS(ph)EEEAPR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGGGDLTLGLEPSEEEAPR 19 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 SGGGDLTLGLEPS(1)EEEAPR;SGGGDLTLGLEPS(1)EEEAPR;SGGGDLTLGLEPS(1)EEEAPR;SGGGDLTLGLEPS(1)EEEAPR;SGGGDLTLGLEPS(1)EEEAPR;SGGGDLTLGLEPS(1)EEEAPR 355.3 6.469099999999998e-91 2171864000.0 1289590.0 1707370.0 1616110.0 1459300.0 1657200.0 1839950.0 1639589.0 1371019.0 1487003.0 1387979.0 True False 1282646.9907269196 1764198.7783230408 1843644.2405200615 1644047.230374602 1868234.5970060471 1712758.5872764152 1560275.8162317781 1473331.399673417 1120551.03546935 1299396.9919113938 0.9871094043708419 1.357705758367141 1.4188460124169504 1.265238599603215 1.437770449397379 1.3181180177714376 1.2007691459533358 1.133857788531716 0.8623623437984382 1.0 20.309410839803117 1.577341908419094 1.9096305343821762 0.9337903754873066 1.305931037389635 0.5536088100545938 0.12520372258556978 0.2197424084105544 1.6525973014020927 0.09809974137096755 0.03453388849692833 37.78695604435083 -1.577341908419094 0.3721406619023283 SGGGDLTLGLEPSEEEAPRS(ph)PLAPSEGAGSDVFDGDLGMGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGGGDLTLGLEPSEEEAPRSPLAPSEGAGSDVFDGDLGMGAAK 43 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 SGGGDLT(0.007)LGLEPS(0.141)EEEAPRS(0.851)PLAPS(0.001)EGAGSDVFDGDLGMGAAK;SGGGDLTLGLEPSEEEAPRS(1)PLAPSEGAGSDVFDGDLGMGAAK 271.26 5.352899999999996e-81 212022000.0 191470.0 235683.0 244180.0 202110.0 243085.0 327298.0 270342.0 208819.0 272422.0 280361.0 True False 190439.14679431694 243527.5661816182 278558.4215493927 227697.105277195 274040.43387232354 304672.65963661904 257264.5246532707 224402.13414139638 205287.24836777814 262468.1209508719 0.7255705801694784 0.9278367418464547 1.06130382821437 0.8675228993612323 1.0440903561145916 1.1607987230329082 0.9801743683051886 0.8549691037846054 0.7821416468562415 1.0 18.00178267992406 -1.556143767462366 3.078323575518167 1.0025278633312524 0.941179489068106 0.021186907505085784 0.1263287385014969 55330068.97934387 66632563.379556045 1154461.6442578367 0.03141964552677584 0.027787932326217197 1.556143767462366 -0.06134837426314643 SGGGGGGGGSSWGGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGGGGGGGSSWGGR 15 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 ;;; 190.66 4.8263e-07 294168000.0 147431.0 181347.0 186355.0 186404.0 185103.0 210001.0 217552.0 190904.0 234891.0 194040.0 False True 146637.24787712411 187383.0252684235 212592.16417330244 210002.72728756734 208674.7698585627 195484.125159181 207028.1786306542 205150.22587086965 177005.26042814372 181656.20107399824 0.8072240144303743 1.0315256190571354 1.170299515878912 1.1560449136664597 1.1487346351229617 1.0761213985728455 1.1396703080139863 1.1293323578164065 0.9743970169013942 1.0 17.470851089328704 4.683674460412256 3.05866308045695 1.109765284957548 0.7774892253519057 0.6498656370525661 0.0637857734673072 0.1730074703148682 2.543048199745699 0.01496740122811454 0.12915834360325085 48269.68452412669 -4.683674460412256 -0.3322760596056422 SGGGLHSVAEGVRLS(ph)PEPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGGGLHSVAEGVRLSPEPGR 20 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR 236.5 8.6357e-30 806380000.0 351139.0 491470.0 443250.0 507880.0 506410.0 464550.0 481590.0 458210.0 585490.0 533670.0 True False 349248.5066392102 507828.28185011103 505655.7472019335 572177.5559258907 570898.3117727689 432436.75193307456 458293.651847543 492403.9569432351 441203.8346640524 499610.7237021262 0.6990412536609929 1.016447921868235 1.01209946707111 1.14524674667918 1.1426862649032032 0.8655473780240523 0.9173014711365225 0.9855752360447975 0.8830952053925555 1.0 18.930444917887566 -0.01885934865615399 7.933273086825428 0.99999999398065 0.9728622479144692 0.002230530641664785 0.12641085500937685 16643151.868351992 2097892.373772429 0.12242218852406356 0.02969174196935001 0.9575041199859182 0.01885934865615399 -0.0271377460661808 SGGGPGPSGSET(ph)PPPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGGPGPSGSETPPPPR 17 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 SGGGPGPSGS(0.095)ET(0.904)PPPPR;SGGGPGPSGS(0.001)ET(0.999)PPPPR;SGGGPGPS(0.005)GS(0.01)ET(0.985)PPPPR;SGGGPGPSGSET(1)PPPPR 238.05 3.4523000000000004e-19 864832000.0 1114749.0 1178370.0 1049927.0 1083544.0 1114255.0 1197659.0 1126696.0 1095101.0 1209410.0 1038934.0 True False 1108747.3152442577 1217591.333110292 1197747.5954709186 1220720.559301731 1256148.769543187 1114867.6523160336 1072193.4100833056 1176822.997430204 911367.1107637212 972628.3426438518 1.1399496258050632 1.2518567264866747 1.2314545473917975 1.2550740152024578 1.2914992443348448 1.1462422010914664 1.1023670225040025 1.2099410903771313 0.9370147576477085 1.0 19.89152910713614 1.4075669014982086 1.0782186682311294 0.9715443645019207 1.2245842982687742 0.6299604532622419 0.06704771146700064 0.29582570707614947 0.6828138359152081 0.06092269544920626 0.021224374443620308 25.560356188040732 -1.4075669014982086 0.2530399337668535 SGGGPGPSGSET(ph)PPPPRR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGGPGPSGSETPPPPRR 18 1 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 SGGGPGPS(0.001)GS(0.009)ET(0.991)PPPPRR;SGGGPGPSGSET(1)PPPPRR;SGGGPGPS(0.001)GS(0.007)ET(0.993)PPPPRR;SGGGPGPSGS(0.012)ET(0.988)PPPPRR 118.02 6.7194e-05 1482130000.0 442062.0 500623.0 463834.0 514282.0 502418.0 497901.0 502960.0 454989.0 515467.0 465574.0 True False 439681.98730970593 517285.9339220056 529137.7954825988 579390.0484694786 566397.9542352058 463482.2758028832 478629.9033062154 488942.58956732793 388437.0647539243 435860.6687220453 1.0087672939126735 1.1868148953166644 1.2140067536583294 1.3293010589100989 1.2994931520109376 1.0633725616074172 1.0981259325590689 1.121786443821417 0.8911954957827045 1.0 18.733507497812653 1.7153714915972418 1.0912883472187462 0.9621283294818939 1.2011625036029148 0.44118929065552215 0.09807331112628406 0.4700587942882916 1.0482306127684622 0.0882733013674894 0.03463245495115745 51.924400567582644 -1.7153714915972418 0.2390341741210209 SGGGYGGDR ddPTM_BT-474_Trastuzumab_2h_R1 5 SGGGYGGDR 9 0 Q92804-2;Q92804;A0A075B7F4;A0A075B7C1 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ;;;; 116.3 0.0031067 3196030000.0 1302690.0 1483871.0 1390278.0 1395902.0 1407642.0 1084872.0 1441802.0 1332421.0 1645382.0 1399480.0 False True 1295676.4617824652 1533260.7492160378 1586017.0578869942 1572623.0500749454 1586896.8649522006 1009877.3521539952 1372056.5290414914 1431853.0209167444 1239899.6530892204 1310163.9882448926 0.9889422037299048 1.1702815548075074 1.2105485054673475 1.2003253517764942 1.2112200298513942 0.7708022516378549 1.0472403007195388 1.0928807643651293 0.9463698164610684 1.0 20.32131596904173 SGGIVIS(ph)PFR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGGIVISPFR 10 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR 151.7 2.0284e-05 2150781000.0 1187100.0 1175657.0 1079390.0 1046545.0 1015343.0 1198771.0 1188775.0 1101214.0 1296646.0 1210574.0 True False 1180708.78549921 1214788.0325453351 1231358.7297739324 1179037.4896953246 1144640.912640543 1115902.7823734006 1131269.4116884964 1183392.1805313863 977104.9674662327 1133314.1308954544 1.041819521447516 1.0718899548049459 1.0865114059779797 1.0403448236930948 1.009994388525041 0.9846367851177354 0.9981958054248009 1.0441872630639168 0.8621660498437466 1.0 20.112116370704292 3.2451459776417466 2.0796301579877268 0.9876372288863975 1.0672585486184962 0.4227882907294326 0.045181460062691976 0.334809497623066 2.975930219840538 0.014103866257815643 0.019485208564452364 1758.5145970058427 -3.2451459776417466 0.07962131973209874 SGGIVIS(ph)PFRLEELTNR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGGIVISPFRLEELTNR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR 303.17 9.0922e-47 709149000.0 321998.0 392807.0 330423.0 384968.0 393360.0 409774.0 451711.0 344932.0 535767.0 458118.0 True False 320264.398545341 405881.3435381544 376943.68631179834 433704.90932834195 443452.0643726155 381447.2878842399 429860.01322640764 370672.5773692054 403734.40175998723 428880.5170254481 0.7467450393097194 0.9463739373222005 0.878901398753518 1.0112488026650266 1.0339757735982742 0.889402229156533 1.0022838440126705 0.8642793567309824 0.9413680168083532 1.0 18.710216253853517 5.3738010852383775 1.5069774077475053 0.950238841999675 7.396966982216473e-11 0.5341917026068299 0.05713242749969522 5.527968366850692 2.9237736471972395 0.015208310585763583 12.57215112246263 236483.63114118326 -5.3738010852383775 -0.9502388419257053 SGGLQT(ph)PECLS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 SGGLQT(1)PECLS(1)R;SGGLQT(1)PECLS(1)R 153.92 0.00064609 236190000.0 1511040.0 1283690.0 901830.0 1070100.0 835370.0 1019690.0 869980.0 918380.0 1281050.0 924250.0 True False 1502904.728532328 1326416.845643008 1028799.825153119 1205574.550280176 941749.4178740894 949201.2303920696 827895.7437536615 986914.179039148 965352.3926905384 865263.573709765 1.7369328539842668 1.5329627710503013 1.1890016596240176 1.3933032510675891 1.088396006128394 1.0970081940725032 0.9568133559628644 1.1405936977189661 1.115674370240329 1.0 19.722780143095854 6.318453906549962 0.45406814705822524 1.044176799955784 4.551650884384221 0.8509857581774121 0.09161100190229125 6.528843583380986 0.3359922108039592 0.054660561504157636 16.720667375378557 2081871.4359618241 -6.318453906549962 3.5074740844284373 SGGLQT(ph)PECLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 SGGLQT(1)PECLSR;SGGLQT(1)PECLSR;SGGLQT(1)PECLSR;SGGLQT(1)PECLSR 221.59 2.9987e-10 2550270000.0 1772420.0 1963350.0 1828360.0 1765270.0 1805520.0 1892490.0 1864420.0 1688890.0 2184210.0 1779420.0 True False 1762877.487654373 2028698.917879864 2085777.1956099896 1988753.0010027913 2035442.2698445306 1761666.6207422721 1774230.8818239518 1814923.5478096479 1645940.7124145061 1665855.8921618948 1.0582412896271398 1.2178117731702969 1.2520754078572391 1.1938325580022717 1.2218597535486688 1.0575144158814584 1.0650566415570386 1.0894841242565692 0.9880450765032602 1.0 20.66783217251523 2.729566860401098 23.41105532490452 1.05119975748896 1.1941767824610001 0.6341643118672824 0.056092154936135286 184.8055957583047 481053.63757912134 0.017962047127450965 0.01718770256447819 536.4964596585758 -2.729566860401098 0.14297702497204012 SGGMERPFVLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGMERPFVLAR 12 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 153.74 6.4664e-05 3395270000.0 2235750.0 2829260.0 2568090.0 2430400.0 2330090.0 2500160.0 2737190.0 2392280.0 3507170.0 2360330.0 False True 2223712.970415177 2923430.208776212 2929654.7497615647 2738088.390805473 2626813.149974543 2327329.8239435903 2604781.6626187772 2570804.081351698 2642874.947170271 2209691.7186198207 1.0063453429621911 1.3230036498494886 1.325820577176003 1.2391268735512528 1.1887690612404782 1.0532373381917939 1.178798671629059 1.1634220555243013 1.1960378567291812 1.0 21.07541367783607 3.006172446680443 5.574706631025355 1.1345995370273754 1.2359717545732682 0.18832383629538474 0.09986575498605366 0.2825596316129901 30.218363923466292 0.029201185540991676 0.03367248327682675 1014.3140626710489 -3.006172446680443 0.10137221754589287 SGGPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGGPPPKR 8 1 P38159;P38159-2;H3BUY5;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 ;;; 103.83 0.0075308000000000016 426654000.0 645734.0 644011.0 607228.0 573739.0 607142.0 485874.0 719862.0 641026.0 903820.0 735227.0 False True 642257.4398917924 665446.5168221288 692720.424279608 646374.2985732154 684457.9348874276 452286.674004371 685039.5249201106 688862.6151840717 681085.6715675136 688304.1834004974 0.9331011715180696 0.9667913298660447 1.0064161180269058 0.9390823333077366 0.9944119931189902 0.6571028985613516 0.9952569538888197 1.00081131539956 0.9895126137439387 1.0 19.39268675288109 2.062693166814951 24.999999999953975 0.997180055170061 0.9187411645935084 0.15370136928447353 0.0921283312492644 131.463039912498 52422.01691366011 0.03541826645416651 0.026158119822668177 115.52957263612623 -2.062693166814951 -0.07843889057655262 SGGPS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGGPSPKR 8 1 Q96E39 Q96E39 RBMXL1 RNA binding motif protein, X-linked-like-1 1 S(0.005)GGPS(0.995)PKR;S(0.003)GGPS(0.997)PKR;S(0.001)GGPS(0.999)PKR 73.885 0.025975 651710000.0 600640.0 574890.0 531230.0 599750.0 526630.0 436652.0 694640.0 601090.0 1041790.0 699740.0 True False 597406.2209773778 594024.8661216564 606022.5664660651 675678.2885062463 593693.2089194382 406467.27500824584 661037.6094175071 645946.3880731732 785054.813770794 655081.9941224463 0.9119564059727646 0.906794678301939 0.9251094853826632 1.0314407884335013 0.9062883948058363 0.6204830519769561 1.0090914043562424 0.9860542556027491 1.1984069487705282 1.0 19.32131596904173 1.6612042972557186 2.5105363910074883 1.0910825997949067 0.8940151886342063 0.3254651518947359 0.11322459977460729 0.2909126307618465 4.1240054634140915 0.07710743876179556 0.03157895306519857 45.83574527696802 -1.6612042972557186 -0.19706741116070048 SGGTEGLLAEKLEALITQTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGGTEGLLAEKLEALITQTR 20 1 Q9UHB9;Q9UHB9-4 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 124.2 2.4913e-05 116530000.0 85376.0 93347.0 96557.0 94513.0 92533.0 92797.0 119060.0 96045.0 136780.0 113730.0 False True 84916.34510216533 96453.99846554681 110151.38631151065 106478.33610936375 104316.52906393934 86382.16181064135 113300.61294663181 103212.36560662783 103072.4017580984 106471.65403084822 0.797548848800286 0.9059124641531447 1.034560675460121 1.0000627592252262 0.9797586974061239 0.8113160502382512 1.064138751087731 0.9693882052092845 0.9680736407855094 1.0 16.700109867025684 4.581271327862767 3.3247311867825555 0.9763999231341141 0.7974036833313439 0.4360469842282144 0.06332057573178128 0.246168528770866 4.559077317472036 0.015318563014763805 0.08768765431219296 38130.39707439846 -4.581271327862767 -0.17899623980277013 SGGYGGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGGYGGDR 8 0 Q92804-2;Q92804;A0A075B7F4;A0A075B7C1 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ; 91.069 0.02966 572050000.0 676630.0 783950.0 710400.0 740310.0 733560.0 518620.0 743590.0 686530.0 837700.0 803760.0 False True 672987.0992606609 810043.3018422179 810418.1450925071 834033.1700943052 826974.5178492359 482769.020100163 707619.7109103474 737762.3547287032 631260.0596049064 752463.3486664427 0.8943785773132552 1.0765219372848147 1.0770200921131576 1.1084037137123357 1.0990229880496454 0.641584764169249 0.9404042232281883 0.9804628438530681 0.8389246608803744 1.0 19.521261786561755 SGIETFS(ph)PPPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGIETFSPPPPPPK 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 SGIET(0.003)FS(0.997)PPPPPPK;SGIET(0.01)FS(0.99)PPPPPPK 141.32 1.0134e-05 0.0 365370.0 385020.0 338140.0 326680.0 357520.0 400820.0 368900.0 339970.0 509890.0 383980.0 True False 363402.8885164235 397835.15795049554 385747.172834432 368037.65450474457 403048.0528129383 373112.25682879053 351054.89766514837 365340.2877326808 384234.44167595287 359474.0676581831 1.0109293582255738 1.1067144858103903 1.0730876231139752 1.0238225441472024 1.1212159348200572 1.0379392851880924 0.9765792006976137 1.0163188964164052 1.0688794442922485 1.0 18.455528173306206 2.481597850924705 24.962491005387804 1.014308618143962 1.0685044868541886 0.29600420796508564 0.03765785326439983 220.454647100576 1229313.7846677692 0.012379193524995431 0.010606204838909334 303.108315444795 -2.481597850924705 0.054195868710226636 SGILPILVHCLER ddPTM_BT-474_Trastuzumab_2h_R1 2 SGILPILVHCLER 13 0 O00629 O00629 KPNA4 Importin subunit alpha-3 0 ; 161.63 3.9019e-05 422450000.0 410790.0 473940.0 466000.0 506030.0 469960.0 486210.0 510770.0 391730.0 609690.0 486940.0 False True 408578.35228305956 489714.8063972195 531608.7494553895 570093.3461155748 529806.620328845 452599.4471152301 486062.10376911797 420962.8817646352 459440.0689274385 455863.0723096921 0.8962742917800776 1.074258557325148 1.1661588352878016 1.2505802306537346 1.162205610655208 0.9928407774336131 1.0662458384848292 0.9234415054322554 1.0078466470197358 1.0 18.798241021271785 2.725030781273311 22.852440013074997 0.9932831259853326 1.1188572294147276 0.26920097285889155 0.09135562506129379 334.1730424465571 564429.5508341016 0.03155802228966566 0.0299429075610631 530.9220727963426 -2.725030781273311 0.125574103429395 SGISTNHADYSSS(ph)PAGS(ph)PGAQVSLYNSPSVASPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGISTNHADYSSSPAGSPGAQVSLYNSPSVASPAR 35 0 Q8WV41 Q8WV41 SNX33 Sorting nexin-33 2 SGISTNHADYS(0.042)S(0.337)S(0.621)PAGS(1)PGAQVSLYNSPSVASPAR 236.31 1.5275e-47 489620000.0 66779.0 110580.0 131320.0 140180.0 120520.0 130660.0 130040.0 121430.0 126500.0 130260.0 True False 66419.46928384432 114260.58845297841 149808.71454609805 157926.77362702068 135867.50762199395 121627.78174055627 123749.46839895853 130491.7232090459 95325.77001315578 121946.6952788034 0.5446598543075833 0.936971585755133 1.2284770341959206 1.2950475883414225 1.1141548962139876 0.9973848119662612 1.0147832880262437 1.0700718286027042 0.7817003141841202 1.0 16.895891136470187 4.679738265030494 3.353321810618592 1.070770401650684 0.5062581208512938 0.5762190599956385 0.13283205434211573 0.1923395797209491 3.5960973879847145 0.033805426872634346 0.2530563169385361 47834.17246456493 -4.679738265030494 -0.5645122807993902 SGISTNHADYSSSPAGS(ph)PGAQVSLYNSPSVASPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGISTNHADYSSSPAGSPGAQVSLYNSPSVASPAR 35 0 Q8WV41 Q8WV41 SNX33 Sorting nexin-33 1 SGISTNHADYS(0.019)S(0.085)S(0.34)PAGS(0.556)PGAQVSLYNSPSVASPAR 282.13 1.3494999999999993e-74 499330000.0 51621.0 69243.0 77948.0 70522.0 64526.0 83564.0 68907.0 78011.0 69596.0 78801.0 True False 51343.07827163228 71547.71139672256 88922.40086383837 79450.07796921636 72743.00362443416 77787.4173684972 65573.70515969727 83832.57695183138 52444.99833862126 73771.85271506972 0.6959711106881852 0.9698510849803719 1.2053703084736787 1.076970077952058 0.9860536362749449 1.0544322055857385 0.8888716054477269 1.136376190464124 0.7109079738200486 1.0 16.170782847674158 4.715334975853179 4.363740380912438 1.0191743336481258 0.6786835363502899 0.33614945666308105 0.1292252716650213 0.19148102975596393 8.476098013916413 0.02938420854897086 0.19154014664896588 51920.034915951976 -4.715334975853179 -0.34049079729783593 SGITS(ph)PVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGITSPVEK 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 S(0.001)GIT(0.092)S(0.908)PVEK;SGIT(0.039)S(0.961)PVEK;SGIT(0.023)S(0.977)PVEK;SGIT(0.025)S(0.975)PVEK 171.67 5.9556e-05 1396660000.0 4140590.0 3401800.0 2977710.0 2927690.0 2918360.0 3883570.0 3716230.0 3526620.0 4850250.0 3625330.0 True False 4118297.5235027964 3515026.856568476 3396945.6852807 3298335.253817181 3289995.8475250825 3615107.9468404483 3536461.757522779 3789794.2922135 3654970.877520224 3393958.3355988287 1.2134201767612935 1.0356717758434963 1.000880196333154 0.9718254992176337 0.9693683664341733 1.0651597896538703 1.0419873810556979 1.1166295863042262 1.076905051892849 1.0 21.69453742371745 -0.06201264971227849 8.040107936375797 1.0000000051897928 1.0520278904952618 0.05263962516808118 0.0687470803226135 0.0 0.0 0.06863975246415731 0.016178544808790562 0.8669366240936714 0.06201264971227849 0.05202788530546898 SGITS(ph)PVEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGITSPVEKR 10 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 S(0.001)GIT(0.176)S(0.823)PVEKR;S(0.003)GIT(0.032)S(0.965)PVEKR 98.902 0.0030998 914950000.0 456140.0 514580.0 469630.0 458240.0 465180.0 516710.0 508300.0 458540.0 785980.0 612800.0 True False 453684.19292191823 531707.4842298209 535749.8219028633 516253.1370155947 524417.9156621244 480991.0539045073 483711.5871054344 492758.5832189404 592285.7605924126 573690.5793555243 0.7908168780313257 0.9268192704630663 0.9338654689165664 0.8998807991505561 0.9141128241137373 0.8384154650837141 0.8431576262744789 0.8589274444291874 1.0324132588298345 1.0 19.129913301946203 1.2379343825326592 24.99998886072208 1.0162066898444957 0.8776315173180848 0.6296944285005976 0.04306495173363652 10.781808778450204 430255.23757970415 0.03502371318587887 0.010755054330655135 17.295550213468914 -1.2379343825326592 -0.13857517252641094 SGKNS(ph)QEDS(ph)EDS(ph)EDKDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 S(0.413)GKNS(0.589)QEDS(0.999)EDS(1)EDKDVK 46.178 0.087344 0.0 379710.0 168160.0 115010.0 95778.0 114930.0 238590.0 204350.0 179410.0 405500.0 168020.0 True False 377665.6835497472 173757.1039451332 131202.40831515944 107903.48497966037 129565.6542565198 222096.83488044798 194464.8098071915 192798.48522552036 305569.9584216176 157296.81975084066 2.400974693245372 1.1046447361133285 0.8341071899799694 0.6859864373010229 0.8237016772605623 1.4119601097609666 1.2362920630895475 1.225698558501784 1.9426327811690196 1.0 17.26312997687463 SGKPAELLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGKPAELLK 9 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 78.908 0.022473 0.0 2947400.0 2546500.0 3124100.0 2131300.0 1321870.0 2547300.0 2845700.0 2210500.0 5023400.0 2386300.0 False True 2931531.525886923 2631258.7131082434 3563946.1248360146 2401122.36147289 1490202.3091626707 2371211.1466992153 2708042.6193703236 2375458.734691563 3785450.380111361 2234004.2909857864 1.3122318241355493 1.1778216916258306 1.5953174929952227 1.0748065127544406 0.6670543629551838 1.061417453971355 1.212192219279651 1.0633187878271075 1.6944687149374171 1.0 21.0912005262188 3.6803405555845137 24.998385758274498 1.0971087670236923 1.3433945298541474 0.16512154769697063 0.2567535365810231 470.40378885684265 201980.43178560087 0.06907294381887044 0.1070073780660943 4790.055612344325 -3.6803405555845137 0.2462857628304551 SGKPAELLKMFGIDRDAIAQAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGKPAELLKMFGIDRDAIAQAVR 23 3 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 162.03 7.4873e-12 820500000.0 887130.0 1010180.0 472290.0 411470.0 758870.0 631620.0 569420.0 722970.0 889420.0 757740.0 False True 882353.790649409 1043803.2306332947 538784.3267817284 463562.0598110305 855507.5963251137 587957.5960735519 541874.9792043604 776921.6925672735 670234.3586173999 709380.384466148 1.2438373120697919 1.4714295087519516 0.7595139907726607 0.6534745955230905 1.205992743891467 0.8288326107523059 0.7638708245536764 1.0952116940080807 0.9448165938811406 1.0 19.436199912371784 4.241491797678099 24.999972839906654 0.9109091434077031 1.357633502097487 0.5433560940495743 0.16540189822250115 54.062617546597735 461075.3957369346 0.04074388371703487 0.1020470264417785 17437.804231689024 -4.241491797678099 0.4467243586897839 SGKYDLDFK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGKYDLDFK 9 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ;;; 103.91 0.0030515 19810420000.0 32293300.0 24704200.0 21765500.0 20259600.0 21376000.0 30801400.0 29655400.0 26837800.0 43361300.0 29863900.0 False True 32119436.46092292 25526464.362995762 24829893.21088255 22824463.28273642 24098106.894521613 28672171.71669657 28220855.007370677 28840572.91558705 32675488.62665182 27957960.33422887 1.1488476296891788 0.9130302803865047 0.8881153315209251 0.8163851371801426 0.8619408070701908 1.0255459044196902 1.0094032136106847 1.0315692765425952 1.1687364970844203 1.0 24.736755777320116 2.605464318102862 5.271810894893574 1.0471199419443684 0.9171808508299899 0.2985365555909194 0.09302313515480133 0.296021642087368 11.49082616117401 0.0314878825090056 0.029520956731489332 403.1478222139787 -2.605464318102862 -0.1299390911143785 SGKYDLDFKSPDDPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 71.558 0.022669 699580000.0 1743100.0 1467200.0 1428000.0 1104600.0 1084500.0 1797700.0 1716400.0 1478800.0 2372300.0 1758500.0 False True 1733715.3432766171 1516034.8650588708 1629049.9876014937 1244442.2467428118 1222604.6466648895 1673429.2303306165 1633371.17471526 1589155.565194247 1787678.452191379 1646271.024472407 1.0531165995782705 0.9208902073367451 0.9895393670817767 0.7559157807212379 0.7426508931338975 1.0164968012280438 0.9921642004473223 0.965306162576442 1.085895594113545 1.0 20.650770434533918 SGLDLHHR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGLDLHHR 8 0 K7ENM7;Q9UK11 K7ENM7 ZNF223 Zinc finger protein 223 0 ;;; 89.296 0.014006 100263000.0 386911.0 582009.0 550814.0 573201.0 588469.0 495156.0 535807.0 369515.0 493001.0 508403.0 False True 384827.9141658529 601380.8177331304 628363.823438886 645768.1878283777 663407.0390209695 460927.0311918486 509887.9684284898 397090.08565915085 371507.50942494697 475956.2852742935 0.8085362586273582 1.2635211180929249 1.320213311348037 1.3567804603236233 1.393840273878615 0.9684230368472106 1.0712915958965463 0.8342994891438568 0.7805496448289306 1.0 18.860469548150427 2.323252355343075 1.8157862051493265 0.8771486088254533 1.2366362132068267 0.41002007861690315 0.17331576929276088 0.32674445977587296 2.1892153029854695 0.08422951008239146 0.058106573399162996 210.5001236801184 -2.323252355343075 0.3594876043813734 SGLEPAS(ph)SPSKGSEPRPLVPPVSGHATIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGLEPASSPSKGSEPRPLVPPVSGHATIAR 30 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.007)GLEPAS(0.451)S(0.451)PS(0.09)KGSEPRPLVPPVSGHATIAR 72.348 0.0028923 640010000.0 166610.0 201490.0 196380.0 204760.0 229200.0 280860.0 305770.0 249000.0 327470.0 297120.0 True False 165712.99027211138 208196.47284672267 224028.59703444032 230682.59500548418 258387.26142516654 261444.8092733252 290978.73694516753 267581.64439638006 246769.4063731865 278157.54722277017 0.5957522703469755 0.7484839973800271 0.805401828105066 0.8293235157870286 0.9289241439069419 0.9399162880306098 1.0460932656705129 0.9619787313629131 0.8871569685490303 1.0 18.085542725069306 4.901561250215561 0.5154937034118546 0.9827342804407374 0.2826727992568962 0.8829391191897842 0.04336486884049773 1.6001964613195792 0.2888878431295559 0.02585889936621049 0.7032266726627946 79718.89132707077 -4.901561250215561 -0.7000614811838413 SGLIHVGDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGLIHVGDELR 11 0 S4R337;Q5T2T1-2;Q5T2T1 S4R337 MPP7 MAGUK p55 subfamily member 7 0 ; 132.76 0.0001757 374490000.0 262240.0 332350.0 306560.0 317150.0 290190.0 331330.0 337000.0 281060.0 353930.0 319980.0 False True 260828.12897760284 343412.0688401827 349720.9833327124 357301.15748187836 327143.97640911443 308425.9369669259 320698.0225349821 302034.1243937615 266708.6939190216 299558.6024513395 0.8707081914630442 1.1463936139038664 1.1674543160199224 1.192758794299418 1.0920867360577833 1.0296013349075057 1.0705685629144186 1.0082638986901542 0.8903389578416327 1.0 18.192478738538036 1.73036549863877 1.4743861461525207 0.9464043994331254 1.097645459409641 0.26617341845965914 0.08896477158716737 0.49173764912769174 2.0634506666125367 0.07088858914631534 0.027473519642968274 53.74839481188154 -1.73036549863877 0.1512410599765156 SGLS(ph)LEELR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGLSLEELR 9 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 S(0.012)GLS(0.988)LEELR;SGLS(1)LEELR;S(0.001)GLS(0.999)LEELR 128.01 0.00045024 155980000.0 593330.0 677200.0 614370.0 663770.0 645500.0 652060.0 612420.0 626020.0 752730.0 644140.0 True False 590135.5772051607 699740.1926239557 700867.9558002303 747803.2139421278 727700.598821748 606984.6269841364 582794.9049284084 672736.7912651486 567229.7775652388 603030.4337240002 0.9786165742262665 1.160372932262683 1.162243091898425 1.2400754126522051 1.2067394249538124 1.0065572034826122 0.9664436027372155 1.1155934321766787 0.9406320905933796 1.0 19.201871288294733 2.7282519896641073 24.668023775910292 1.0181293236511388 1.1559352079862095 0.4588963707980024 0.0773311720169733 576.430266234501 1379365.348616441 0.02556023579014624 0.024340765264964325 534.8746184176034 -2.7282519896641073 0.13780588433507068 SGLSCQVGSATSHPVSCQEPIDEDQRIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGLSCQVGSATSHPVSCQEPIDEDQRISPK 30 1 Q8TEP8;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1;K7ELX0;Q8TEP8-2 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 SGLSCQVGSATSHPVSCQEPIDEDQRIS(1)PK 140.94 3.2303e-08 155370000.0 96169.0 71325.0 74027.0 78480.0 79439.0 129320.0 110960.0 92333.0 194980.0 120530.0 True False 95651.23678938026 73699.00950812695 84449.35814578134 88415.55995326441 89555.08577815784 120380.4127865356 105592.44089163691 99223.3573174738 146929.7915981431 112837.67220907533 0.8476888517528918 0.6531418812998118 0.7484145719463826 0.7835641964453189 0.7936630030103996 1.0668459427582344 0.9357906701228839 0.8793460142781414 1.3021341961565724 1.0 16.78388928362374 2.8323606662106484 4.7285226718326125 1.0082764089543237 0.7545876495571221 0.5773225362300608 0.11497755533748309 0.18125806018302837 6.8040086521538425 0.0358679372302348 0.03807654231385532 679.767921496108 -2.8323606662106484 -0.2536887593972016 SGLSLEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGLSLEELR 9 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 0 ; 80.165 0.024883 2438400000.0 297505.0 992320.0 972500.0 1154450.0 1013020.0 624260.0 679560.0 474220.0 253429.0 591180.0 False True 295903.2661359132 1025348.771329893 1109419.5468784661 1300603.2516315763 1142022.0923600432 581106.3755499749 646687.0866287018 509608.7044403678 190974.81872461693 553450.386265338 0.5346518377783727 1.852648036346866 2.0045510390999755 2.34999068373228 2.063458840577137 1.0499701327724393 1.1684644236902992 0.9207848021919143 0.3450622196025694 1.0 19.078094467690935 2.622500372490514 4.574076940077935 0.8963535389864222 1.8101427950302098 0.435976556338289 0.4919039383444534 0.2260829121706463 7.530611926881527 0.16888944727385524 0.15840388618795193 419.2763562940525 -2.622500372490514 0.9137892560437876 SGLTVPTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 SGLTVPTSPK 10 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 SGLTVPT(0.02)S(0.98)PK;SGLTVPT(0.005)S(0.995)PK;SGLTVPT(0.097)S(0.903)PK;SGLTVPT(0.164)S(0.836)PK;SGLTVPT(0.003)S(0.997)PK 186.36 1.4143000000000004e-06 5480830000.0 13041100.0 10006400.0 8650900.0 8519600.0 8040490.0 12110100.0 12212300.0 10398300.0 15381000.0 10100300.0 True False 12970888.166602412 10339456.975003475 9868871.525029242 9598180.486465728 9064398.74178201 11272957.291109068 11621544.393483564 11174273.947497524 11590558.644840693 9455690.206698127 1.3717547723183892 1.093464014681796 1.0436965794457214 1.0150692627034952 0.958618413213354 1.1921876716227064 1.229052997659675 1.181751273913564 1.2257760556315909 1.0 23.17275133912667 SGMS(ph)PEQSR ddPTM_BT-474_Trastuzumab_2h_R1 12 SGMSPEQSR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.001)GMS(0.999)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR 160.62 6.8348e-05 24288472000.0 15827894.0 17299984.0 16160770.0 16335889.0 16269702.0 16853934.0 17508424.0 15899168.0 19728200.0 17049061.0 True False 15742678.37734833 17875803.50937884 18436065.944069017 18404010.87244356 18341552.111621097 15688861.21247316 16661474.642445173 17085644.65049924 14866449.454336293 15960975.330544537 0.9863230818496128 1.119969371493852 1.155071388951269 1.1530630485484044 1.1491498314968789 0.9829512850915425 1.0438882522774213 1.07046369640096 0.9314248751381973 1.0 23.92804547752285 2.7399037625690745 24.999999999867402 1.018231996096075 1.1177129998440172 0.45336475995877434 0.05779356338200382 126.30840373126219 2351008.9099214855 0.0185945321062698 0.01875652594343849 549.4191119084239 -2.7399037625690745 0.09948100374794211 SGMS(ph)PPPCK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGMSPPPCK 9 0 Q9H6T0-2;Q9H6T0 Q9H6T0-2 ESRP2 Epithelial splicing regulatory protein 2 1 SGMS(1)PPPCK;SGMS(1)PPPCK;SGMS(1)PPPCK;SGMS(1)PPPCK 144.17 0.0001051 3907940000.0 3577710.0 3199910.0 2856960.0 2638260.0 2600210.0 3441120.0 3483960.0 3071730.0 3980900.0 3362320.0 True False 3558448.0068809516 3306417.0699635576 3259195.134858517 2972263.4454931067 2931331.3308478696 3203243.473925171 3315427.5447803442 3300958.0905288905 2999860.536327051 3147733.858973026 1.1304793118824616 1.0504118893464214 1.0354100063344798 0.9442550033320899 0.9312513262491133 1.017634786624005 1.0532744168727244 1.0486776323605247 0.9530222918229116 1.0 21.585882135401064 4.603766916146534 1.7580325552287996 1.0006003402703525 1.1518769217548859 0.5126415673278164 0.040512222727378214 0.648616545803411 2.4911848293486893 0.012115287999868125 0.14996113121759033 40157.522942237556 -4.603766916146534 0.15127658148453338 SGMSHEEDQLIPNLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGMSHEEDQLIPNLYR 16 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;; 182.57 2.1231e-09 1363250000.0 745380.0 914340.0 800260.0 876300.0 870210.0 915980.0 882440.0 776220.0 966380.0 886100.0 False True 741366.9568995024 944773.2541697976 912929.6520153857 987239.4901509376 981026.0853612305 852660.4585849909 839753.0059518391 834145.4779652939 728228.5978285656 829548.3393716218 0.8936995250464653 1.1389007841127836 1.1005141095296807 1.1900927809689377 1.1826026752152288 1.027861087915475 1.0123014730979358 1.0055417368409831 0.8778615582308256 1.0 19.661966526672522 2.1667231607880315 1.6542436073217885 0.9609844068007165 1.1057957719359892 0.3303578117071171 0.08489026173168578 0.43775420086418154 2.331635680347596 0.04869482523248771 0.027874333685114105 146.79902150713397 -2.1667231607880315 0.1448113651352727 SGNFGGSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGNFGGSR 8 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;; 142.04 0.0014512 2746430000.0 1796890.0 2144600.0 2044300.0 1825410.0 1819820.0 1609250.0 2042660.0 1789490.0 2462450.0 1962880.0 False True 1787215.743893247 2215981.7145619253 2332119.670625862 2056506.7188364943 2051563.290081787 1498006.3352670325 1943848.7320810275 1923030.8306460972 1855612.1926394878 1837607.317893886 0.9725776157343596 1.2059060132072725 1.2691066518491805 1.1191219684483475 1.1164318242012226 0.8151939321747608 1.057815080051437 1.0464862715338534 1.009797999044887 1.0 20.809397076400906 2.9777432000722346 24.522465182183865 0.9961221844570755 1.1506689867186102 0.3880829488227543 0.09437691076954231 637.3034784885012 702179.5457315478 0.029065804231742563 0.031080611435462785 950.0428636902893 -2.9777432000722346 0.15454680226153472 SGNLTEDDKHNNAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGNLTEDDKHNNAK 14 1 P13797;A0A0A0MSQ0;P13797-3;P13797-2 P13797 PLS3 Plastin-3 0 147.51 4.8154000000000005e-06 114220000.0 77950.0 60345.0 62597.0 52691.0 53455.0 97622.0 75814.0 70964.0 133150.0 88200.0 False True 77530.32586105922 62353.54684567715 71410.1134971222 59361.67519747007 60262.177397392064 90873.62091746982 72146.58718239504 76259.69402789054 100336.96661859033 82571.00048818103 0.9389534510019251 0.7551506761093715 0.864832847790716 0.7189167485740581 0.7298225410992545 1.1005512877426888 0.8737521255143553 0.9235650964263915 1.2151598748394998 1.0 16.33334756557877 2.744676128633867 24.980994835719052 0.9977014497837196 0.7978849461642749 0.5068229942311124 0.10761422886541705 455.7483577518527 1861667.9008626575 0.0333329109603829 0.0345374735735188 555.4898510017589 -2.744676128633867 -0.1998165036194447 SGNS(ph)DSIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SGNSDSIER 9 0 C9J8U3;A0A0A0MRW7;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-10;Q7Z2E3-8;Q7Z2E3-7;Q7Z2E3;A0A5F9ZI51;A0A5F9ZGW5;Q7Z2E3-13;Q7Z2E3-9;Q7Z2E3-11 C9J8U3 APTX Aprataxin 1 S(0.388)GNS(0.612)DSIER 165.07 6.4804e-05 169500000.0 198510.0 186600.0 174650.0 183170.0 175150.0 174630.0 205700.0 206580.0 232220.0 179890.0 True False 197441.24421653437 192810.8681979179 199239.20191498645 206359.30321915692 197454.31430461557 162558.2391348031 195749.50514969087 221996.0485919849 174992.49258857715 168409.26618842268 1.1723894337003382 1.1448946519498149 1.1830655546712618 1.22534411490324 1.1724670427795594 0.9652570954909735 1.16234402999345 1.3181937883608335 1.039090642392497 1.0 17.36161199476692 2.9736043403318666 24.976817974076912 1.1315690796340456 1.1814283391524365 0.10751514387004979 0.09625275453958591 2614.2086898879384 2473687.6972442144 0.032009529771231296 0.034050018023809345 941.0318881368767 -2.9736043403318666 0.049859259518390875 SGPFGQIFRPDNFVFGQSGAGNNWAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGPFGQIFRPDNFVFGQSGAGNNWAK 26 1 Q5JP53;P07437;Q5ST81;P68371;M0QY85;M0QZL7;Q13885;Q9BVA1;P04350;M0R278;M0R1I1 Q5JP53;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain 0 ; 291.15 2.7839999999999992e-70 38227000000.0 1009810.0 1033870.0 974260.0 893310.0 984810.0 1136890.0 1162570.0 1047550.0 1365520.0 1165430.0 False True 1004373.2951604374 1068281.7379623866 1111427.339580273 1006402.9544068623 1110219.7160738143 1058299.4702511954 1106332.0476513174 1125723.5003511177 1029005.89303055 1091051.259625179 0.9205555525461571 0.9791306581960093 1.018675639458126 0.9224158310880857 1.0175687954892425 0.9699814384658377 1.0140055638003553 1.031778745883901 0.9431324916705158 1.0 20.057287453084516 3.2046886295750565 24.998345341374574 0.9999926228012732 0.9657241110709923 0.18645371873566208 0.035424289768683476 317.1578180028985 234069.10539141175 0.010150999511372888 0.012133354141963728 1602.0963448040059 -3.2046886295750565 -0.03426851173028089 SGPIS(ph)PGIHSCDLTVEGLATVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGPISPGIHSCDLTVEGLATVTR 23 0 Q9BUB4-2;Q9BUB4 Q9BUB4-2 ADAT1 tRNA-specific adenosine deaminase 1 1 S(0.006)GPIS(0.994)PGIHSCDLTVEGLATVTR 270.18 8.484699999999999e-46 434700000.0 224390.0 256530.0 245000.0 279600.0 263640.0 246080.0 244940.0 201090.0 289390.0 225950.0 True False 223181.9091720725 265068.4459743403 279493.8704218248 314997.33133196615 297212.9912832935 229069.06881001178 233091.31643833363 216096.35691433 218073.71212732908 211529.6775544725 1.0550855641265722 1.2531028697194542 1.3212986170692307 1.4891401290528086 1.4050652122171183 1.0829169290017122 1.101931980103873 1.0215888352530653 1.030936720787897 1.0 17.69050056169225 2.6375831250984074 5.501689946009098 1.0472055141670302 1.3123998787580473 0.5879307350320455 0.10783921589929414 0.1767272407478226 7.862296318550893 0.03832885945977172 0.03605769749108847 434.09334229351566 -2.6375831250984074 0.2651943645910171 SGPKPFSAPKPQT(ph)SPSPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGPKPFSAPKPQTSPSPKR 19 3 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 SGPKPFSAPKPQT(0.59)S(0.405)PS(0.005)PKR 91.733 0.0010748 1412700000.0 1348300.0 1348300.0 1431700.0 1510100.0 1262500.0 1685400.0 1958800.0 1616100.0 3678500.0 2019600.0 True False 1341040.9026102119 1393177.3504354376 1633270.9154405182 1701278.50516596 1423271.8915762336 1568892.2650048495 1864045.3606573364 1736701.5883895175 2771982.96437465 1890707.3989334484 0.7092799781535184 0.7368550793323873 0.8638411825975026 0.8998105714959672 0.7527721594463025 0.8297911490111398 0.9858983794683661 0.9185459312050052 1.4661089103149068 1.0 20.850494682072352 1.4354102433935407 3.939361003207316 1.2331252025019397 0.8299393239164401 0.5856503850807564 0.13292851714900986 0.13784127256217626 3.857979854909771 0.0910553939956075 0.03269211325790602 27.252744421915807 -1.4354102433935407 -0.4031858785854996 SGPKPFSAPKPQTS(ph)PSPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGPKPFSAPKPQTSPSPKR 19 3 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 SGPKPFSAPKPQT(0.193)S(0.771)PS(0.036)PKR 90.694 0.012133 1717400000.0 346080.0 324220.0 258620.0 365920.0 277730.0 365200.0 412790.0 323900.0 765890.0 392010.0 True False 344216.7437331029 335011.46670487133 295031.4480346625 412245.4344813767 313097.26926532027 339954.58358832996 392821.7706890657 348071.0627308742 577146.6719002048 366991.58618335426 0.9379417858400909 0.912858712072747 0.8039188339518514 1.1233103155542454 0.8531456334502786 0.9263280042024826 1.070383587739274 0.9484442582206039 1.5726427897228523 1.0 18.485387461999316 1.2823115931296207 24.728359623648952 1.2863212729518294 0.9492745765576406 0.43285321283897216 0.15532758596335408 85.69822257121459 48437.11291916578 0.09350168395089932 0.03414367225426792 19.156298384481087 -1.2823115931296207 -0.3370466963941888 SGPKPFSAPKPQTSPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 SGPKPFSAPKPQT(0.003)S(0.003)PS(0.993)PK;SGPKPFSAPKPQTS(0.003)PS(0.997)PK 191.62 1.129e-14 74436000000.0 2579000.0 1555520.0 1500600.0 1452370.0 1304090.0 2511300.0 2516100.0 2508200.0 4932300.0 2520400.0 True False 2565114.95055384 1607294.5428683043 1711871.4365509814 1636239.8930851505 1470158.13155299 2337699.7419643314 2394386.6305645923 2695374.620381533 3716800.7544338987 2359545.9141769987 1.087122287022138 0.681188076574862 0.7255088473868821 0.6934554158298145 0.6230682449193942 0.990741365920702 1.014765856505804 1.1423276844017975 1.57521866054906 1.0 21.17007781433611 2.081583222900089 1.457384053587498 1.2689297268844615 0.7588432057061215 0.5460840399479145 0.18454493579899092 0.2927197753908891 1.17345890385141 0.11584105712301566 0.059148657737187874 120.66552947540119 -2.081583222900089 -0.51008652117834 SGPLFNFDVHDDVR ddPTM_BT-474_Trastuzumab_2h_R1 8 SGPLFNFDVHDDVR 14 0 Q14320;B0S8I6 Q14320 FAM50A Protein FAM50A 0 ;;;;;;; 182.35 1.5325e-06 3578787000.0 2665846.0 3101633.0 2821088.0 2864775.0 2899911.0 3082796.0 3154152.0 2692922.0 3395681.0 3013784.0 False True 2651493.3813393363 3204868.9794282597 3218272.669063531 3227455.2212680043 3269197.4767308687 2869689.5686412053 3001573.617729257 2893881.514020838 2558860.9173442097 2821441.7248897017 0.9397654248708578 1.1358976338784907 1.1406482865384513 1.1439028468306127 1.1586975013133298 1.0171004218608803 1.0638439175441758 1.0256747422752346 0.9069338185406765 1.0 21.4280011212524 1.7977537195364366 1.245706253099027 0.959901527284926 1.1030769733304926 0.37161781400174954 0.06777904624297255 0.4571939857467938 1.3247972176978233 0.05456520667545168 0.022045500902090717 62.77022993633139 -1.7977537195364366 0.14317544604556665 SGPPS(ph)PPSTATSFGGPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGPPSPPSTATSFGGPR 17 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 SGPPS(0.98)PPS(0.005)T(0.015)ATSFGGPR;SGPPS(0.992)PPS(0.005)T(0.003)ATSFGGPR 143.75 5.638800000000001e-07 401550000.0 286950.0 278940.0 239780.0 254060.0 263480.0 286440.0 264680.0 249630.0 291720.0 271200.0 True False 285405.0930831424 288224.349277209 273538.9397948783 286223.96995064133 297032.6162316878 266639.0770072322 251876.41722421115 268258.65819545544 219829.51484772944 253891.78381399866 1.1241210282418215 1.135225192983647 1.0773839770855806 1.127346327049044 1.1699181902211304 1.050207584513929 0.9920621039424262 1.0565866061738411 0.865839420029349 1.0 17.953854183157592 2.1629460801205163 1.171743789082507 0.9645865714293426 1.1249892195835132 0.6535364579334384 0.050191459894941316 0.31335759832313637 0.8149511554680864 0.03452248705300461 0.0182922319600096 145.52783891157912 -2.1629460801205163 0.1604026481541706 SGPPS(ph)PPSTATSFGGPRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 SGPPS(1)PPSTATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR;SGPPS(0.996)PPS(0.004)TATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR 285.95 2.6665999999999997e-40 5990410000.0 531680.0 708810.0 680312.0 645220.0 639868.0 722734.0 671521.0 690910.0 829380.0 707350.0 True False 528817.4939552012 732402.3123653063 776094.0162220913 726904.785844103 721351.3970052283 672773.0997128369 639036.9637706636 742469.2125698922 624990.4121226174 662206.3174071974 0.7985690864830967 1.1060032094422692 1.1719821992348394 1.0977013760458008 1.0893151847744484 1.0159569337046084 0.9650118806971654 1.1212052694950965 0.9438001355373726 1.0 19.336921248458587 1.2200241832101832 24.989865375316104 0.9719000399578398 1.0533600119158482 0.07593901338148967 0.10020302833588685 680.945746162324 917991.199295742 0.09290321678127894 0.023390887400045295 16.596793222807275 -1.2200241832101832 0.08145997195800836 SGPS(ph)PLS(ph)SPNGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SGPSPLSSPNGK 12 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 2 SGPS(1)PLS(0.595)S(0.405)PNGK;S(0.001)GPS(0.999)PLS(0.689)S(0.311)PNGK;SGPS(1)PLS(0.593)S(0.407)PNGK 162.48 9.146e-05 799870000.0 2662710.0 2130390.0 1787700.0 1682760.0 1766990.0 2704960.0 2643850.0 2381590.0 3528330.0 2720920.0 True False 2648374.2652148907 2201298.7433020514 2039392.6210330434 1895797.2434627316 1992005.7027297297 2517972.4819909334 2515956.875012202 2559316.339268975 2658820.348699748 2547268.5561031913 1.0396918137545619 0.8641800794925196 0.8006193992175304 0.7442471030078274 0.7820163672797413 0.9884990241637203 0.9877077424694907 1.0047296870747757 1.0437927097750574 1.0 21.28051963892199 2.664844368548992 6.426504319113002 1.0049896863176986 0.8391925539290411 0.5262997268280114 0.07523606016635963 0.2022258789135192 14.444772540114522 0.02606290552075343 0.024582297475689057 462.21535469145755 -2.664844368548992 -0.16579713238865745 SGPS(ph)PLSS(ph)PNGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGPSPLSSPNGK 12 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 2 S(0.001)GPS(0.998)PLS(0.259)S(0.741)PNGK 99.991 0.0019405 0.0 229270.0 189470.0 169420.0 166540.0 166870.0 235150.0 227120.0 217540.0 314920.0 233790.0 True False 228035.63579429156 195776.39441296618 193272.86337496122 187623.94692426926 188119.9053840205 218894.63398355892 216133.33791734467 233773.93944573696 237312.1857118027 218869.32204231102 1.041880304039177 0.8944898836718624 0.8830514097247417 0.8572418700506528 0.8595078726823755 1.0001156486482972 0.9874994626956562 1.06809824814345 1.0842642701014369 1.0 17.73971022685851 2.3664797883346 1.9514484808154045 1.04972122767017 0.9037916600609791 0.5315308683169555 0.05647729415779019 0.24688392344563376 1.9217632313785644 0.02564416959034387 0.018835274042429427 232.53042658351833 -2.3664797883346 -0.14592956760919085 SGPS(ph)PLSSPNGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SGPSPLSSPNGK 12 0 O75179-6;O75179-2;O75179;O75179-4;H0YM23;O75179-7 O75179-6 ANKRD17 Ankyrin repeat domain-containing protein 17 1 SGPS(1)PLSSPNGK;SGPS(1)PLSSPNGK;SGPS(0.995)PLS(0.004)S(0.001)PNGK 154.1 7.4696e-05 260280000.0 789400.0 663100.0 551940.0 579870.0 562970.0 764310.0 685040.0 582350.0 882490.0 778750.0 True False 785149.9581105846 685170.8826475849 629648.3544515182 653281.4825445892 634660.8925153828 711475.0486922138 651901.9980930681 625807.9141133819 665012.1642601566 729049.5082785826 1.0769501236815389 0.9398139287761087 0.8636565107056056 0.8960728662818862 0.8705319533291116 0.975894010781428 0.8941806978682784 0.8583887747089045 0.9121632436600503 1.0 19.475657262819976 4.701314847966311 3.238873463338325 0.9013495749290472 1.0947990502894718 0.5540919295917884 0.04454536162655499 0.19596424570025536 3.3652199579501985 0.01038892473917428 0.09030078338297108 50270.69019736918 -4.701314847966311 0.19344947536042456 SGQGFHGNSEVNAILS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGQGFHGNSEVNAILSPR 18 0 Q8TB72-3;Q8TB72;Q8TB72-4;Q8TB72-2;A0A0A0MR59;C9JW01 Q8TB72-3 PUM2 Pumilio homolog 2 1 SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR 258.83 7.262499999999998e-31 5599750000.0 961860.0 1136781.0 1168887.0 1165527.0 1285532.0 1242855.0 1200420.0 1118177.0 1356130.0 1267540.0 True False 956681.4526326912 1174618.0683863747 1333456.1294520625 1313082.5986958249 1449236.8802548733 1156939.3592159734 1142351.0985502757 1201621.045727756 1021929.9327109965 1186644.51200441 0.806207286979924 0.989865167287783 1.123719964962099 1.1065509387287715 1.221289834987656 0.9749671005192109 0.9626733929108083 1.0126209101140566 0.8611929877675099 1.0 20.178456374918508 2.5163002008269593 24.9767790572612 0.9662493136396924 1.0579646296293692 0.13890605002954215 0.10757223862050681 1099.9047836654079 701193.3007087848 0.036504619349927304 0.03441099566630125 328.3221634322807 -2.5163002008269593 0.09171531598967686 SGS(ph)AAQAEGLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSAAQAEGLCK 12 0 F8WF93;H7BZZ2;F8WE30;H7C0X4;Q92685 F8WF93 ALG3 Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase 1 S(0.006)GS(0.994)AAQAEGLCK;S(0.002)GS(0.998)AAQAEGLCK 149.3 0.00032393 0.0 374080.0 383050.0 352420.0 252891.0 352740.0 521970.0 430800.0 346220.0 580500.0 442450.0 True False 372065.99484419485 395799.58769138483 402037.67271044693 284906.97467050195 397659.3481462177 485887.4424852155 409960.5581841849 372056.6944695369 437443.5533014781 414212.46219949774 0.8982491566489764 0.9555472705713893 0.9706073800281098 0.6878281091728279 0.9600371414095514 1.1730391690899846 0.9897349683958446 0.8982267034987051 1.0560849641718204 1.0 18.66001143427951 3.007513694320469 24.999310056569836 1.0107251606586618 0.8819197329094003 0.3317519491741997 0.09635330339525087 249.89711180746113 831441.2009787794 0.029385776676015104 0.035060021979829645 1017.45144829793 -3.007513694320469 -0.12880542774926151 SGS(ph)FDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSFDSR 7 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.059)GS(0.941)FDSR 103.8 0.0086999 167130000.0 613110.0 606930.0 556160.0 567700.0 577840.0 493680.0 628080.0 629860.0 751310.0 651740.0 True False 609809.0838829254 627131.2981530674 634462.4937706203 639570.7617924077 651424.4988739884 459553.06359771796 597697.3709013992 676863.3515642736 566159.7175382135 610145.395217314 0.9994488013233817 1.0278391069881032 1.0398545965337416 1.0482268108646684 1.067654536083112 0.753186153988821 0.9795982655716328 1.1093476356126506 0.9279095146437444 1.0 19.218793546562175 5.166736513597179 16.000995245596716 1.0011062352701712 0.22532556022568548 0.0 0.09373753294404702 9504.307623787146 1425023.9815723866 0.022446072785117465 152443.85761490394 146803.53505619586 -5.166736513597179 -0.7757806750444857 SGS(ph)FGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGSFGK 6 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 SGS(1)FGK;SGS(1)FGK;SGS(1)FGK;SGS(1)FGK 107.9 0.032388 3018130000.0 9091200.0 4445170.0 3777960.0 4185570.0 3278120.0 3323290.0 4483860.0 4922700.0 9500100.0 6341700.0 True False 9042253.989327265 4593124.796287995 4309863.929383005 4715462.732843838 3695569.1510604965 3093558.78448319 4266958.56179141 5290056.870964095 7158927.649818025 5936967.276597466 1.5230425852219736 0.7736483262074436 0.7259369520818767 0.7942544590790326 0.6224674954210735 0.5210671779643257 0.7187101365053918 0.8910368921547902 1.2058223190882864 1.0 22.501294730599753 1.423591100455431 4.6479467927018625 1.0982062748733115 0.7888351099162583 0.16046155626359604 0.2587850513019985 0.3461305591309819 13.05310072239029 0.18054279129810466 0.06613598313562052 26.521073580766988 -1.423591100455431 -0.3093711649570532 SGS(ph)GGGSAKEPQEER ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSGGGSAKEPQEER 15 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 S(0.203)GS(0.796)GGGS(0.001)AKEPQEER;S(0.009)GS(0.991)GGGSAKEPQEER 142.88 1.2732e-05 541270000.0 761760.0 696380.0 604730.0 715380.0 693140.0 845480.0 906780.0 777180.0 1221590.0 967090.0 True False 757658.7687994931 719558.5873294013 689870.7275926125 805947.0346504353 781407.2704373467 787033.9576458416 862915.587164009 835177.1180400747 920545.5129673586 905369.4882325956 0.836850345242522 0.7947678783985503 0.7619770011681463 0.8901857695952993 0.8630810741841543 0.8692958707745265 0.9531087565680367 0.9224710230410504 1.0167622445112312 1.0 19.78814716171921 2.3639921999467757 0.5480521316335777 1.008498268235279 0.794401195492615 0.8136810235550258 0.034161724483725224 0.3612822426725035 0.22294712838940173 0.03070325593856319 0.027102926989318963 231.2023265202969 -2.3639921999467757 -0.21409707274266399 SGS(ph)GSESTGAEER ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSGSESTGAEER 13 0 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3;H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 S(0.001)GS(0.984)GS(0.015)ESTGAEER;S(0.01)GS(0.966)GS(0.024)ESTGAEER 246.68 3.4961999999999996e-17 127521000.0 123877.0 168965.0 151680.0 144893.0 140063.0 150929.0 159002.0 159621.0 202045.0 151730.0 True False 123210.05999602856 174588.89788350047 173035.22557380542 163236.4389437862 157899.19283155786 140495.63347865033 151310.4658133744 171532.7295590144 152253.7170142929 142046.46149741157 0.8673926734758807 1.2290971281018634 1.218159352578864 1.1491763837197786 1.1116024374492086 0.9890822481432281 1.0652181280568658 1.2075818556179954 1.0718585694376297 1.0 17.1160033676065 2.9952558299596292 24.58734232547713 1.0859344516824918 1.1312195049399487 0.025208532308229614 0.1092044318942479 716.324220146606 3712504.6892817533 0.03250398060007125 0.037933307006839945 989.1355934264186 -2.9952558299596292 0.04528505325745691 SGS(ph)IVELIAGGGS(ph)SCSPVLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 S(0.354)GS(0.646)IVELIAGGGS(0.539)S(0.066)CS(0.395)PVLSR 199.94 1.1317e-21 153470000.0 138850.0 122500.0 115230.0 114310.0 115940.0 151550.0 131340.0 117790.0 191540.0 131370.0 True False 138102.44702768515 126577.33844718628 131453.38240288498 128781.63427953159 130704.27176978087 141073.70521032708 124986.58243247648 126580.0879255006 144337.53350450468 122985.85412848444 1.1229132651581886 1.029202417986623 1.068849611480963 1.0471255836056743 1.062758580618816 1.1470726142450993 1.0162679547023503 1.0292247740399578 1.1736108557144624 1.0 16.908132860307692 -1.1704804719364754 4.999024004472019 0.9999949639392031 1.0706541568819088 0.15988677313483868 0.0511689031883361 2.746298266837104e-06 4.555923910966949e-07 0.04734532199149774 0.01115860359513797 0.06753354197884119 1.1704804719364754 0.07065919294270573 SGS(ph)IVELIAGGGSSCS(ph)PVLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 S(0.336)GS(0.664)IVELIAGGGSS(0.001)CS(0.999)PVLSR;S(0.399)GS(0.601)IVELIAGGGS(0.12)S(0.294)CS(0.585)PVLSR;S(0.387)GS(0.613)IVELIAGGGS(0.076)S(0.229)CS(0.695)PVLSR 220.66 6.723100000000001e-25 172270000.0 274254.0 220197.0 213225.0 212120.0 209000.0 301016.0 261835.0 226141.0 341112.0 274456.0 True False 272777.44693648367 227526.12403310277 243245.22661507584 238974.37025084623 235614.91115994667 280207.47243544523 249169.04074316646 243016.78974073046 257049.51826662125 256939.98310639663 1.0616387673051604 0.8855224526845483 0.9467005628094484 0.9300785629455304 0.9170036843288052 1.0905561253945195 0.969755807292895 0.9458114957534628 1.0004263064039327 1.0 17.971071883713883 SGS(ph)IVELIAGGGSSCSPVLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 S(0.173)GS(0.827)IVELIAGGGSSCSPVLSR 113.54 0.00020829 63747000.0 32135.0 30934.0 39037.0 27977.0 32570.0 36175.0 50294.0 38517.0 51305.0 64646.0 True False 31961.988730534125 31963.619490002136 44533.07028431338 31518.885331453555 36717.59644248546 33674.30739679036 47861.087078262295 41391.33412536299 38661.57020177833 60520.236933774904 0.5281206807816857 0.5281476264704443 0.7358376724969583 0.5207991066846537 0.6066994827311102 0.5564140046847293 0.7908278206285766 0.6839255135543508 0.6388205360809193 1.0 15.885130015195854 -4.9999999999725695 0.14507277705315003 2.3477047839863068 0.4971783251378618 0.6998168507714391 0.07886615838488799 73.56859119229786 0.644143939237988 28.436214558746315 0.42934351946181654 1.0000000000631611e-05 4.9999999999725695 -1.850526458848445 SGS(ph)LDDSFSDFQELPASSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SGSLDDSFSDFQELPASSK 19 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 S(0.096)GS(0.904)LDDSFSDFQELPASSK;S(0.136)GS(0.781)LDDS(0.049)FS(0.035)DFQELPASSK;S(0.126)GS(0.874)LDDSFSDFQELPASSK 374.68 3.8068999999999994e-108 378400000.0 367030.0 281736.0 277176.0 259509.0 263346.0 365150.0 329535.0 334157.0 504560.0 374990.0 True False 365053.95126086654 291113.4124469919 316199.9715430192 292362.81279194244 296881.55212596763 339908.0399706423 313594.13310405106 359093.4921548648 380217.9487576112 351057.81715490884 1.039868458760973 0.8292463469586672 0.9007062543304422 0.8328053058648557 0.8456770868456827 0.9682394846677163 0.8932834358896317 1.0228898905174078 1.083063615671703 1.0 18.421349127911128 1.684555837172137 3.7494853601902527 1.0456088665761727 0.8957177609553932 0.48026831387583224 0.06369663279573447 0.14755681706904294 4.840955605830085 0.03520250483067288 0.01636806906310116 48.36774466365927 -1.684555837172137 -0.14989110562077945 SGS(ph)MDNTSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSMDNTSAR 10 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 S(0.004)GS(0.996)MDNTSAR 117.79 0.0026175 0.0 178270.0 146240.0 140450.0 148500.0 133990.0 157470.0 177480.0 144260.0 225850.0 162660.0 True False 177310.21412765878 151107.50999605318 160224.1391867156 167300.08477395182 151052.8322790491 146584.46954450797 168894.61436055964 155025.41373743713 170192.29373495048 152278.89953976765 1.1643780895681755 0.9923076043545445 1.0521755783037625 1.09864259119013 0.9919485413644038 0.9626052590840232 1.1091137043346757 1.018036078576679 1.1176354324159319 1.0 17.216356523692752 4.752986526079988 23.906607695909923 1.0394566805539647 1.1643782506435556 0.34669789626198977 0.051990994472859396 1515.723033679981 2511777.2596587692 0.011888686274643961 0.23850355500189757 56622.17218232515 -4.752986526079988 0.12492157008959093 SGS(ph)MDPSGAHPSVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGSMDPSGAHPSVR 14 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 1 S(0.282)GS(0.627)MDPS(0.087)GAHPS(0.004)VR;S(0.04)GS(0.947)MDPS(0.013)GAHPSVR;S(0.026)GS(0.934)MDPS(0.034)GAHPS(0.006)VR;S(0.488)GS(0.51)MDPS(0.001)GAHPSVR 142.45 9.8568e-06 391626000.0 596200.0 554188.0 557478.0 617392.0 617909.0 677494.0 573408.0 596449.0 779330.0 733799.0 True False 592990.1254440467 572633.8125662792 635966.0567143593 695553.7638973715 696596.0485164186 630660.4344293318 545670.0644087214 640959.0530866535 587274.5639869777 686967.3195830686 0.8631999056431706 0.8335677640587325 0.9257588222687758 1.0124990579166329 1.014016283830203 0.9180355694534198 0.7943173552126137 0.9330269938832924 0.8548799153115522 1.0 19.38988194320816 4.764735483483329 0.006464652962900263 1.7968058215974518 1.799496712833134e-05 0.06222477915499047 0.07147619276761658 74382.09858312318 74.07765479803284 9811.182515402419 10794.604114162315 58174.87830721879 -4.764735483483329 -1.7967878266303234 SGS(ph)PAPETTNESVPFAQHSSLDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSPAPETTNESVPFAQHSSLDSR 24 0 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 S(0.035)GS(0.952)PAPET(0.013)T(0.001)NESVPFAQHSSLDSR;S(0.031)GS(0.967)PAPET(0.003)TNESVPFAQHSSLDSR 249.87 1.5206000000000001e-38 1079730000.0 88973.0 218513.0 252750.0 214109.0 278485.0 233380.0 259110.0 223634.0 202231.0 243360.0 True False 88493.9792538297 225786.07311110216 288335.00305761676 241215.1774469094 313948.4140400848 217246.98991742748 246575.85940367685 240322.70467044218 152393.8798065652 227828.55644902174 0.38842356126516064 0.9910349985543775 1.2655788525883662 1.058757432371666 1.3780029111949055 0.953554696142922 1.0822868882060004 1.0548401324932948 0.6688971838377268 1.0 17.797589062858382 4.727102636712968 4.2312857992812285 1.0709345959335286 0.3417356685867883 0.5579794922724615 0.1771569515893082 0.1414295485976985 5.796173708996431 0.04162118207848937 0.30628737754770513 53346.09532933032 -4.727102636712968 -0.7291989273467403 SGS(ph)PLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSPLEK 7 0 B1AKL4;Q9NRA8;Q9NRA8-3;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 S(0.031)GS(0.969)PLEK 73.985 0.049731 193560000.0 389300.0 306960.0 302720.0 241800.0 260190.0 309940.0 365380.0 328500.0 518860.0 410180.0 True False 387204.0520552961 317176.9780387614 345340.344710591 272411.8552076876 293323.65423304535 288514.57732028206 347705.1735128538 353014.33808920055 390993.9053677945 384001.96122723405 1.008338735609132 0.8259774950760504 0.8993192212011518 0.7094022497621757 0.7638597815896842 0.7513362077584622 0.9054775980873141 0.9193034768911076 1.0182080948707004 1.0 18.550754153731106 1.6464565622030944 1.8261053763278063 1.005318389996466 0.8236867603959701 0.4221595287230725 0.08137748423633548 0.3143045891230689 2.1609437857509746 0.06482967140383131 0.024141341848752138 44.305389836616406 -1.6464565622030944 -0.18163162960049584 SGS(ph)PRPTEPTDFLMLFEGS(ph)PSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 2 S(0.32)GS(0.369)PRPT(0.156)EPT(0.156)DFLMLFEGS(0.819)PS(0.181)GK 48.69300000000001 0.082977 15428000.0 7388.0 4201.9 4230.8 3600.6 5608.5 6680.0 6318.9 6449.6 9700.3 6847.0 True False 7348.22382888397 4341.757701397811 4826.459865227165 4056.4355908221664 6322.709230816082 6218.227323028601 6013.230666457855 6930.9019024052 7309.7910423605945 6410.018597988377 1.1463654459895054 0.6773393298360104 0.7529556726624519 0.6328274292519489 0.9863792334082002 0.9700794510923938 0.938098786225824 1.0812608101605647 1.140369708857723 1.0 12.646112827338658 3.093043150558245 7.845800501678665 1.0228651206779171 0.7903684569646533 0.36993329192276103 0.13910817391558603 0.24762180174597467 18.28209458917424 0.039969402235054165 0.047861680695603946 1238.9196767885953 -3.093043150558245 -0.23249666371326383 SGS(ph)PRPTEPTDFLMLFEGSPSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 S(0.013)GS(0.987)PRPTEPTDFLMLFEGSPSGK;S(0.163)GS(0.837)PRPTEPTDFLMLFEGSPSGK;S(0.156)GS(0.842)PRPT(0.002)EPTDFLMLFEGSPSGK 323.72 3.8208999999999995e-74 624528000.0 522319.0 388334.0 370381.0 340109.0 394362.0 567103.0 540505.0 474138.0 689462.0 556215.0 True False 519506.89253909595 401259.4624371398 422527.4253906363 383166.76452783874 444581.6631332964 527900.5044268687 514358.7082203867 509520.5851839791 519553.328417474 520716.8825003812 0.9976762997284145 0.7705904608092787 0.8114340817254508 0.7358447121743902 0.8537876878477643 1.013795638604981 0.9877895753072883 0.9784983016824044 0.9977654765535543 1.0 18.99013965647655 2.817238661074707 4.757590697631737 0.9922562310209595 0.8208829104316466 0.6068205848602088 0.06498999127273478 0.14532086257483143 5.995582322787848 0.019787422741740987 0.020931415673510406 656.5059417814196 -2.817238661074707 -0.17137332058931287 SGS(ph)PSDNS(ph)GAEEMEVSLAKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749;P31749-2 P31749 AKT1 RAC-alpha serine/threonine-protein kinase 2 S(0.102)GS(0.707)PS(0.191)DNS(1)GAEEMEVSLAKPK 157.62 2.2142e-09 305000000.0 588860.0 361660.0 379990.0 340360.0 339220.0 567490.0 513740.0 491600.0 832070.0 562020.0 True False 585689.6431884968 373697.6344719133 433489.28906771046 383449.5411021026 382417.6562855363 528260.7520277695 488888.4335226157 528285.6882942187 627017.4976667714 526151.4024304705 1.1131580006876332 0.7102473408712361 0.8238869782828241 0.7287817524211094 0.7268205587194492 1.004009016392535 0.9291782389332718 1.0040564101015208 1.1917054573462438 1.0 19.00511847567654 2.141148079900415 1.2825798026847846 1.072257214390176 0.8165789479505466 0.3881008074470461 0.12583035217312485 0.44697546884957545 1.3949328158439414 0.08215814718115484 0.04314929620693713 138.4038209290752 -2.141148079900415 -0.25567826643962943 SGS(ph)PSDNSGAEEMEVSLAKPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749;P31749-2 P31749 AKT1 RAC-alpha serine/threonine-protein kinase 1 S(0.075)GS(0.419)PS(0.419)DNS(0.086)GAEEMEVSLAKPK;S(0.001)GS(0.684)PS(0.314)DNSGAEEMEVSLAKPK;S(0.003)GS(0.885)PS(0.112)DNSGAEEMEVSLAKPK;S(0.009)GS(0.987)PS(0.004)DNSGAEEMEVSLAKPK;S(0.019)GS(0.979)PS(0.003)DNSGAEEMEVSLAKPK;S(0.01)GS(0.938)PS(0.051)DNSGAEEMEVSLAKPK 256.0 1.1859e-36 7647880000.0 5708150.0 4125320.0 3934580.0 3299880.0 3531920.0 5872570.0 5130870.0 4626820.0 7547170.0 5394600.0 True False 5677417.954635086 4262628.7823914 4488534.664017568 3717644.4696556847 3981689.07667004 5466613.058442824 4882670.216273185 4972096.802915906 5687271.0803967435 5050312.009450582 1.1241717232541293 0.8440327596423348 0.888763833921198 0.7361217411318164 0.7884045716817413 1.0824307583795265 0.9668056561923914 0.9845127971522724 1.1261227167260615 1.0 22.267941089977136 2.7344195354248004 24.996169504120836 1.0217281262893383 0.8674112343247682 0.35195410339511835 0.10481604912522169 421.60604662268423 2544868.213149514 0.033930075297133856 0.03305499503728971 542.5247249174952 -2.7344195354248004 -0.1543168919645701 SGS(ph)PTVPIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSPTVPIK 9 0 E9PF82;E9PBG7;Q13557;D6R938;Q13557-8;Q13557-6;Q13557-11;Q13557-10;Q13557-3;Q13557-4;Q13557-9;Q13557-5;H0Y9J2 E9PF82;Q13557 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 S(0.009)GS(0.958)PT(0.032)VPIK;S(0.043)GS(0.934)PT(0.023)VPIK 99.568 0.005505899999999999 816860000.0 1527340.0 1246880.0 1166680.0 1100140.0 1154360.0 1575340.0 1472650.0 1417060.0 2085790.0 1524490.0 True False 1519116.9711434264 1288381.6470451222 1330938.4030356512 1239417.6112001056 1301360.9035722297 1466440.4537514767 1401412.2934306855 1522808.2128848769 1571775.0026540721 1427195.7430184467 1.0644068822196533 0.9027364699955315 0.932554913750502 0.8684286071221038 0.9118307071319575 1.0274977773196194 0.9819341882752323 1.0669932420511672 1.1013030345296908 1.0 20.444751786489217 2.344615475607553 1.578268508581344 1.0551230919455714 0.932157493349902 0.41097028027460836 0.05796893235563682 0.3511631119120369 1.763622619964954 0.029543377687167253 0.01992820236455934 221.1136102456796 -2.344615475607553 -0.12296559859566936 SGS(ph)S(ph)PGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.138)GS(0.878)S(0.984)PGLR;S(0.068)GS(0.937)S(0.995)PGLR 74.42399999999998 0.05996 854540000.0 1965490.0 1925960.0 1520400.0 1721380.0 1716370.0 1769920.0 1822260.0 1744600.0 2282200.0 1832600.0 True False 1954908.0202264665 1990064.4143325954 1734459.1044462954 1939306.5315029337 1934939.5457779781 1647569.5963435294 1734110.322090792 1874790.910899296 1719782.389913234 1715641.8990322046 1.1394615748946397 1.159953260325009 1.0109680262674312 1.1303679005490006 1.127822505890932 0.960322545907118 1.0107647307220728 1.0927635376338545 1.0024133771058896 1.0 20.710317024024093 2.7603611367238816 24.974706629821682 1.0248249132757348 1.1115005052516838 0.5060452047763293 0.048939875853337936 802.3878623636664 919215.0820672215 0.015665611549396982 0.016602936661336144 575.9186422929268 -2.7603611367238816 0.08667559197594898 SGS(ph)SPEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSSPEVK 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.004)GS(0.498)S(0.498)PEVK;SGS(0.5)S(0.5)PEVK 135.63 0.0008657999999999999 2672500000.0 7372600.0 5499700.0 4654000.0 4205100.0 4512500.0 3760800.0 5964200.0 6178900.0 9302600.0 6556700.0 True False 7332906.740772859 5682754.18986114 5309242.74670682 4737465.228841383 5087140.127317028 3500824.7479709466 5675688.860543442 6640000.893818448 7010098.878453616 6138245.792526714 1.1946257918998031 0.9257944992655504 0.8649446317660983 0.7717946444258106 0.8287612290649224 0.5703298411792478 0.9246434653127719 1.0817424258087904 1.142036196560975 1.0 22.549394985829064 1.8217756961940879 4.1659051276959 1.0826566882475552 0.8503845795557082 0.28924379759302865 0.14887394430998696 0.27670838112589236 8.014984608192727 0.07708056937552128 0.04203022986816939 66.3400349821825 -1.8217756961940879 -0.232272108691847 SGS(ph)SQELDVKPSAS(ph)PQER ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.085)GS(0.913)S(0.002)QELDVKPS(0.33)AS(0.67)PQER 112.48 0.00015633 358390000.0 328690.0 270790.0 226150.0 193680.0 212630.0 296320.0 285430.0 284990.0 401450.0 284360.0 True False 326920.3695608924 279803.0814539882 257989.95426896214 218199.86814154196 239707.17014325116 275836.09586225037 271622.66045151325 306257.4009498974 302518.02665439853 266211.901347156 1.2280456580134973 1.0510539913431916 0.9691150281539369 0.8196473074169456 0.900437467033673 1.0361523826184762 1.0203250082996902 1.1504271574640075 1.1363805491922663 1.0 18.022215544675017 1.9456245578977118 3.511187067988851 1.1096687910826963 0.9900934593511652 0.1256601579060881 0.10712253733736417 0.4322691492107039 10.04067434474429 0.05565440171492989 0.031923999378035466 88.23168188667569 -1.9456245578977118 -0.11957533173153112 SGS(ph)SQELDVKPSASPQER ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.171)GS(0.804)S(0.026)QELDVKPSASPQER;S(0.032)GS(0.56)S(0.408)QELDVKPSASPQER 78.27199999999998 0.0073845 1672400000.0 533240.0 471370.0 427030.0 392800.0 459920.0 618500.0 522510.0 498570.0 712490.0 532760.0 True False 530369.095088534 487059.2655008177 487152.1121887014 442528.4397253086 518488.0858405867 575744.5507923928 497234.1951179626 535775.825087162 536906.3863768643 498758.80068121676 1.0633779180721086 0.9765426992678233 0.9767288547557202 0.8872594110036608 1.039556765980717 1.1543546700449738 0.996943200679022 1.0742182881893743 1.076485037744787 1.0 18.927982772588095 3.0169968217942835 24.970797922309604 1.0640437856832292 0.9744883759745973 0.32982429794421264 0.0570420363369312 256.29174034550635 376527.17301487253 0.016079990474149052 0.01921577974857857 1039.9125556284694 -3.0169968217942835 -0.08955540970863196 SGS(ph)TESLNPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSTESLNPR 10 0 Q96JB2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 1 S(0.011)GS(0.949)T(0.04)ESLNPR 120.86 0.00055643 464770000.0 240350.0 240290.0 242820.0 213220.0 212380.0 256440.0 247170.0 266140.0 271300.0 235400.0 True False 239055.98230539548 248287.90739162778 277006.9453707247 240213.630138061 239425.33412511676 238712.90639482826 235213.44281890677 286000.71823153656 204441.7502337484 220376.57046392074 1.0847613328501855 1.1266529235342493 1.2569709419998225 1.0900143769021395 1.0864373359704071 1.0832045615933998 1.0673250896125324 1.2977818723173187 0.9276927660838559 1.0 17.749611325059693 1.2088772297354227 24.999999909714926 0.9638460889704996 1.139699621327073 0.450079531588372 0.07634167080984207 218.0131327276475 183610.31272512025 0.07525540884736953 0.018824689461605797 16.176226888926927 -1.2088772297354227 0.1758535323565733 SGS(ph)TESLNPRPQTTISPADLHGMWYPTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSTESLNPRPQTTISPADLHGMWYPTVR 29 1 Q96JB2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 1 S(0.133)GS(0.84)T(0.026)ES(0.001)LNPRPQTTISPADLHGMWYPTVR 173.04 9.3893e-13 356580000.0 212640.0 205110.0 218840.0 247230.0 222530.0 230820.0 254420.0 216580.0 308650.0 231030.0 True False 211495.16986652507 211936.96235838652 249650.76980862112 278529.2926509368 250867.87646135353 214863.95669183537 242112.7326212173 232742.29937095608 232587.34319810715 216285.46760526585 0.977851966700401 0.9798946027441122 1.1542651134760888 1.287785516682377 1.159892429385051 0.9934276170786249 1.119412854233405 1.0760884767150651 1.0753720338834472 1.0 17.722577207151616 0.6347425963315029 0.8203615346235867 0.9999034635968483 1.101585772961517 0.08664968102869242 0.09114509508594879 3.401760212068707 4.013007098201714 0.09826700545151228 0.033417402365507255 4.312633939031208 -0.6347425963315029 0.10168230936466871 SGS(ph)TGSSLSVSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSTGSSLSVSVR 13 0 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 S(0.005)GS(0.947)T(0.048)GSSLSVSVR;S(0.019)GS(0.944)T(0.036)GS(0.001)S(0.001)LSVSVR 94.781 0.0052423 359300000.0 315980.0 372420.0 353450.0 390340.0 371130.0 348300.0 349970.0 299543.0 421630.0 365450.0 True False 314278.7987886781 384815.77456735546 403212.6877575264 439757.00397753855 418391.20564014855 324222.84081000905 333040.61408477055 321896.4197085337 317724.93605254445 342126.66812251374 0.9186036286307167 1.1247757349028253 1.1785479628648476 1.2853631270277472 1.2229131623563612 0.9476690098121979 0.9734424267841947 0.9408691274345918 0.9286763227085497 1.0 18.38417103825784 2.72717786262016 24.28163402091648 0.9546837108226489 1.154405425200742 0.5165706348005448 0.09067987372995656 414.77685757499023 884797.6881232074 0.031004856925694355 0.029479150698221452 533.5533642300827 -2.72717786262016 0.19972171437809316 SGS(ph)VSNYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSVSNYR 8 0 Q13131-2;Q13131 Q13131-2 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 S(0.039)GS(0.94)VS(0.021)NYR;S(0.037)GS(0.907)VS(0.056)NYR 83.86200000000002 0.018735 1019490000.0 611520.0 797550.0 674710.0 815480.0 785110.0 753270.0 711200.0 657250.0 827860.0 709620.0 True False 608227.6442662587 824095.9696208438 769703.3033155488 918719.6843869514 885089.1047884488 701198.2179068485 676796.5389521647 706297.3324478754 623844.9957556608 664331.444063753 0.9155484806585337 1.240489181995966 1.1586133852211333 1.3829236785287342 1.332300484490556 1.055494548952221 1.0187633672917271 1.063170106968616 0.9390568538191806 1.0 19.341543675954505 2.576138673407824 6.459104951813963 1.0188467062701585 1.214644066379993 0.38876816213623366 0.12008213648628398 0.2647781926039283 14.63997815952502 0.04004747558609868 0.03759204746924809 376.82410247088785 -2.576138673407824 0.1957973601098344 SGS(ph)YS(ph)GRSPS(ph)PYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSYSGRSPSPYGR 14 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 3 S(0.015)GS(0.971)Y(0.017)S(0.6)GRS(0.402)PS(0.974)PY(0.02)GR;S(0.287)GS(0.71)Y(0.004)S(0.8)GRS(0.199)PS(1)PYGR 153.68 5.158e-06 806500000.0 909190.0 872880.0 542520.0 789380.0 815130.0 953710.0 868310.0 902190.0 1143280.0 938100.0 True False 904295.022060506 901933.2831328985 618902.1003316261 889315.4270630447 918931.9738459683 887782.2724918566 826306.5280336804 969515.9990279933 861533.9631671202 878229.6548521827 1.0296794432575958 1.0269902389992802 0.7047155569300325 1.0126228625389881 1.046345871798916 1.0108771294466043 0.9408775067755579 1.103943591145502 0.9809893783558554 1.0 19.744238724667444 3.520280305352216 24.99990380033466 1.0204219419745406 0.9190403791899232 0.17311951137355452 0.09266478489635363 755.3731203165452 437548.24629796535 0.02457912464006564 0.03807478498326501 3313.4491140973273 -3.520280305352216 -0.10138156278461741 SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK 39 0 P28072;A0A087X2I4 P28072 PSMB6 Proteasome subunit beta type-6;Proteasome subunit beta type 0 373.67 5.478599999999997e-162 548270000.0 213610.0 224270.0 196220.0 203990.0 209630.0 258600.0 267770.0 228540.0 290330.0 263210.0 False True 212459.94749430218 231734.6913759219 223846.07042518564 229815.113084434 236325.1379256441 240723.59067892164 254816.94211926454 245594.81530260548 218782.06172268366 246411.7124545815 0.8622152956039487 0.9404369989865443 0.9084230136440647 0.9326468729719715 0.9590661725107871 0.9769161874693425 1.034110511959663 0.9966848282338585 0.8878720071514843 1.0 17.910711306356593 3.308236623420837 1.4141222573863312 0.9849002125814752 0.9039105955053603 0.41623429287616853 0.03914399843293557 0.4002318465852851 1.6635491887404963 0.01365144830246159 0.02167237990765568 2033.4646333471353 -3.308236623420837 -0.08098961707611485 SGSALLQSQS(ph)STEDPKDEPAELKPDSEDLSSQSSASK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSALLQSQSSTEDPKDEPAELKPDSEDLSSQSSASK 37 2 Q5VTR2 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A 1 SGSALLQS(0.026)QS(0.5)S(0.385)T(0.089)EDPKDEPAELKPDSEDLSSQSSASK;SGSALLQS(0.346)QS(0.372)S(0.271)T(0.011)EDPKDEPAELKPDSEDLSSQSSASK 191.39 6.9306e-24 2686100000.0 910250.0 451920.0 435130.0 421130.0 378810.0 773820.0 681360.0 729390.0 1355170.0 769400.0 True False 905349.3151382827 466961.8840085916 496392.5217822395 474445.0148205678 427049.2081172215 720327.6447763456 648400.0137520331 783820.7855673725 1021206.5118476542 720296.2332835199 1.256912466432298 0.6482914423693621 0.6891505173078583 0.6586804052240807 0.5928799685241839 1.0000436091310412 0.9001852068505997 1.0881922594461886 1.4177590617021751 1.0 19.458230834317863 1.9285167477793024 1.4614139309547733 1.203786185559861 0.76688826090696 0.37937397330145783 0.20916056188421137 0.39368158206089293 1.5650648452737013 0.14563465717561472 0.06550978229954141 84.82360925087218 -1.9285167477793024 -0.436897924652901 SGSDRLPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSDRLPSR 9 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 0 85.355 0.013563 87169000.0 129540.0 137900.0 151910.0 138090.0 125320.0 129430.0 145110.0 107950.0 203160.0 144500.0 False True 128842.57103324689 142489.9181376898 173297.6075746097 155572.1798413134 141278.75917016502 120482.80874544787 138090.474925968 116005.77715899298 153093.94020452743 135277.88628732602 0.95242891923658 1.0533127183481092 1.2810490489667392 1.1500192981348254 1.044359599691655 0.8906319580537068 1.0207911929719846 0.8575368845769834 1.1316996769106864 1.0 17.04556649740929 2.9974351604170364 5.521392655684703 0.9651383908743376 1.1160246597544874 0.24782863089020934 0.10408140247690079 0.2066263088489076 21.6925270109688 0.031682703311512427 0.03613346985365986 994.1116433395612 -2.9974351604170364 0.15088626888014978 SGSGSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 SGSGSVGNGS(0.003)S(0.009)RYS(0.978)PS(0.009)QNS(1)PIHHIPSR;SGSGSVGNGS(0.01)S(0.012)RY(0.003)S(0.975)PS(0.002)QNS(0.998)PIHHIPSR;SGSGSVGNGSSRY(0.001)S(0.997)PS(0.002)QNS(1)PIHHIPSR;SGSGSVGNGS(0.014)S(0.016)RY(0.001)S(0.968)PSQNS(1)PIHHIPSR 215.72 5.0904e-34 3977610000.0 224479.0 359255.0 287543.0 409429.0 372944.0 334897.0 362694.0 234176.0 461111.0 403202.0 True False 223270.43000596162 371212.58550076646 328026.5550314399 461262.6694202993 420436.2077877276 311746.35865274054 345149.10559437016 251651.4022416336 347476.3726208403 377469.30316140025 0.5914929456144266 0.9834245656316097 0.8690151815899599 1.2219872332852195 1.1138288710273092 0.8258853264140593 0.914376620042106 0.6666804429763954 0.9205420671578812 1.0 18.525999799728815 2.620515112834475 20.002996380429213 0.8344670173545601 0.9677247513762659 0.046422625802955086 0.17520302286712336 10.12839893205036 1680.7454042762968 0.057979243024474554 0.05466321021304948 417.364121894481 -2.620515112834475 0.13325773402170582 SGSGSVGNGSSRYS(ph)PSQNSPIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 SGSGS(0.004)VGNGS(0.054)S(0.054)RY(0.069)S(0.512)PS(0.3)QNS(0.006)PIHHIPSR;SGSGSVGNGSSRYS(0.879)PS(0.121)QNSPIHHIPSR;S(0.024)GS(0.016)GS(0.003)VGNGS(0.039)S(0.039)RYS(0.763)PS(0.116)QNSPIHHIPSR;SGSGS(0.001)VGNGS(0.041)S(0.041)RY(0.003)S(0.902)PS(0.013)QNSPIHHIPSR 197.83 3.5112000000000007e-25 2799180000.0 92757.0 157478.0 186162.0 221836.0 201289.0 182213.0 190411.0 121542.0 194677.0 182505.0 True False 92257.60661827149 162719.5600325386 212371.9914508887 249920.4148546424 226921.9610166241 169617.04419326506 181200.09248934255 130612.08121777058 146701.46188815107 170857.3746496083 0.5399685369593907 0.952370714850567 1.2429781967937756 1.4627429185727299 1.3281367660131276 0.9927405506558502 1.060534219614137 0.7644509432831205 0.8586194314936899 1.0 17.38243299402608 1.8935457024770854 4.560759692211649 0.8548739022383777 1.1098199877930819 0.1295260793186156 0.24146782993884058 0.42961017076277486 13.865102676479887 0.12223414191787614 0.07081996177513732 78.26105578495303 -1.8935457024770854 0.2549460855547042 SGSIVELIAGGGSSCS(ph)PVLSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 SGSIVELIAGGGSSCS(1)PVLSR;SGSIVELIAGGGSSCS(1)PVLSR;SGSIVELIAGGGSS(0.264)CS(0.735)PVLSR;SGSIVELIAGGGSSCS(1)PVLSR;SGSIVELIAGGGSSCS(1)PVLSR;SGSIVELIAGGGSSCS(1)PVLSR 349.58 2.6322999999999996e-95 2255920000.0 2691040.0 3382570.0 3028270.0 3156410.0 3057360.0 3641130.0 3459060.0 2957960.0 3388240.0 3504340.0 True False 2676551.739642649 3495156.797643256 3454624.0938053033 3556011.1823659926 3446696.6736075333 3389427.253398067 3291732.0529075833 3178697.995416536 2553253.65208992 3280690.020983579 0.815850239590815 1.065372459844706 1.0530175273217606 1.0839217236683245 1.0506011392609973 1.0331446225394643 1.003365765083985 0.9689114104305212 0.778267265654203 1.0 21.645567855251095 1.5018785651674909 4.114895034613845 0.8839313398166562 1.0219083495715229 0.23866247717665867 0.08710779125516431 0.22303653490433525 8.042142466050942 0.05391778836961287 0.021523016856547374 31.759858962506538 -1.5018785651674909 0.1379770097548667 SGSMDPS(ph)GAHPSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSMDPSGAHPSVR 14 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 1 S(0.002)GS(0.085)MDPS(0.913)GAHPSVR 227.47 2.1154e-12 155470000.0 176840.0 191400.0 198120.0 218370.0 213690.0 233820.0 219280.0 198160.0 277040.0 261180.0 True False 175887.91308877093 197770.63329625674 226013.57391008962 246015.61961001946 240902.15486013854 217656.57375307565 208672.5886690531 212947.70543609123 208767.20414580783 244511.268792552 0.7193448136658175 0.8088405670335346 0.9243482929281424 1.0061524805171405 0.9852394781220677 0.8901699084377972 0.8534272866012359 0.8709116209149448 0.8538142441317496 1.0 17.89954143064294 4.445782464379589 2.981068675602288 0.9163186483729868 0.7263880878182115 0.5857727492372061 0.055569672082430195 0.2097598351645912 3.5493746140241202 0.015566246086659916 0.06820568454274435 27911.45422268948 -4.445782464379589 -0.1899305605547753 SGSMDPSGAHPSVR ddPTM_BT-474_Trastuzumab_2h_R1 12 SGSMDPSGAHPSVR 14 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 0 ;;;;;;;;;;; 179.5 1.4109e-06 5505665000.0 3382614.0 6060860.0 6577505.0 7265269.0 7166952.0 7011357.0 7119383.0 6320184.0 6184703.0 6901327.0 False True 3364402.382067744 6262592.061232754 7503560.531301643 8185051.310475184 8079620.855347366 6526678.393549082 6774991.245605842 6791828.223324064 4660565.816424307 6460878.402336693 0.5207345151165431 0.9693096930856607 1.161383958037013 1.2668635440522935 1.2505452590510333 1.0101843723275445 1.0486176683275055 1.0512236572766447 0.7213517305539645 1.0 22.62329889222235 4.71404129141216 3.273043252628414 1.0751298577885224 0.4586947363391373 0.5519979547538005 0.1456322174492478 0.225107052391021 3.978400422553728 0.036875226285216986 0.3395410308723257 51765.60467897714 -4.71404129141216 -0.6164351214493851 SGSPS(ph)DNS(ph)GAEEMEVSLAKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749;P31749-2 P31749 AKT1 RAC-alpha serine/threonine-protein kinase 2 S(0.102)GS(0.291)PS(0.639)DNS(0.946)GAEEMEVS(0.022)LAKPK 47.68 0.054047000000000005 0.0 77469.0 55758.0 53169.0 58138.0 49225.0 81568.0 69758.0 70985.0 106250.0 73240.0 True False 77051.91551161496 57613.87132357725 60654.733046767375 65498.264838976575 55493.51197056635 75929.39615041872 66383.53903856162 76282.26115452629 80066.11117705773 68565.76049608129 1.123766657791518 0.8402717465209188 0.8846213125607197 0.9552619903154136 0.8093472830909234 1.1073952305211912 0.9681733063014099 1.1125416038940605 1.1677273116752451 1.0 16.06520070093122 2.720449931168241 24.741538614838408 1.0722848034359727 0.9177756620198535 0.37748389449221553 0.09525084347196881 730.3237748818963 997715.3367264895 0.029695968248726626 0.02805019376002436 525.3514450348906 -2.720449931168241 -0.15450914141611916 SGSPSDNS(ph)GAEEMEVSLAKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749;P31749-2 P31749 AKT1 RAC-alpha serine/threonine-protein kinase 1 SGS(0.001)PS(0.137)DNS(0.862)GAEEMEVSLAKPK 134.97 4.459e-06 4135500000.0 192100.0 145430.0 151750.0 123840.0 135670.0 196970.0 170890.0 169710.0 283920.0 213100.0 True False 191065.75494431626 150270.5496357086 173115.0809653546 139518.13130239883 152946.77032090898 183353.92751750624 162623.39783680456 182374.62196991846 213951.72033308446 199499.77555591115 0.9577241598989609 0.7532366851891232 0.8677457429862518 0.6993397908024109 0.7666513403071203 0.9190683398343977 0.8151557934521498 0.9141595345745477 1.0724409074491568 1.0 17.60602759780395 1.4777381151647244 2.864316239044052 1.035478583324765 0.8207479556630843 0.5513562998675514 0.07517354467465048 0.1755532406963734 2.8276454230109116 0.05605210213013661 0.01939205102506255 30.04264148621079 -1.4777381151647244 -0.21473062766168072 SGSS(ph)PEVK ddPTM_BT-474_Trastuzumab_2h_R1 5 SGSSPEVK 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SGS(0.065)S(0.935)PEVK;SGS(0.001)S(0.999)PEVK;S(0.001)GS(0.03)S(0.969)PEVK;SGS(0.051)S(0.949)PEVK;SGS(0.087)S(0.912)PEVK 162.8 0.00035623 2915900000.0 8172210.0 6193670.0 5215640.0 4868090.0 5127760.0 4623550.0 6806440.0 7005080.0 10909880.0 7476680.0 True False 8128211.729377891 6399822.561797414 5949956.7768444335 5484389.6948634805 5780749.841385302 4303934.871166003 6477186.494074198 7527834.6406754935 8221286.258902202 6999511.881292214 1.1612540798883968 0.9143241229295423 0.8500531005236301 0.7835388792641039 0.8258789954819092 0.6148907158325208 0.9253768839775744 1.0754799432222328 1.174551368485488 1.0 22.73882288695423 1.7928781745794387 3.721810838889706 1.095530918741993 0.8507518435805071 0.3567614445332855 0.13361026587545732 0.2360588186049377 6.067083955506571 0.07248500939422069 0.037557988715818634 62.0694896573088 -1.7928781745794387 -0.2447790751614859 SGSS(ph)PGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.122)GS(0.073)S(0.805)PGLR 111.95 0.0032890000000000003 237390000.0 207500.0 230390.0 199520.0 205780.0 213060.0 220500.0 225530.0 204220.0 235560.0 251390.0 True False 206382.84305541727 238058.3918763039 227610.68174107157 231831.72690090103 240191.92809444127 205257.35400116863 214620.25229173418 219459.93340814754 177509.39434228453 235346.07497419277 0.8769334397357105 1.0115248019428773 0.9671318366623729 0.985067318103023 1.0205903290325955 0.8721511672700573 0.9119347000593432 0.9324988038666578 0.7542483738543317 1.0 17.844424266862802 2.7281402825905365 24.49666888658945 0.8950915644586581 0.9748592860298502 0.2474414481677416 0.06800067653874863 752.8853117072457 1769918.7470664645 0.020840398328465782 0.01985356664649835 534.7370583119786 -2.7281402825905365 0.07976772157119205 SGSS(ph)SPDSEITELKFPSINHD ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSSSPDSEITELKFPSINHD 21 1 P17812;B4E1E0;P17812-2 P17812 CTPS1 CTP synthase 1;CTP synthase 1 S(0.049)GS(0.049)S(0.349)S(0.349)PDS(0.167)EIT(0.037)ELKFPSINHD 73.783 0.008571299999999999 929570000.0 133610.0 137360.0 111300.0 131990.0 118460.0 152240.0 165080.0 139790.0 184970.0 146690.0 True False 132890.65860546668 141931.94456412655 126970.07256305747 148699.92046676023 133545.17883257056 141716.00713441215 157094.44973315968 150221.83963923677 139386.62197101535 137328.1186123727 0.9676871710488415 1.033524277462424 0.9245744705892883 1.0828075267417447 0.9724532760076616 1.0319518578305502 1.1439350609366472 1.0938898832748039 1.014989671302882 1.0 17.0672675291224 2.471245912676914 24.986445967115788 1.0775639472476743 0.9994225746365439 0.23297950693020286 0.05482340814309347 180.43987998341206 767359.4780730869 0.018095035388381173 0.01517998291678362 295.9687870629711 -2.471245912676914 -0.07814137261113041 SGSSHAPQDVSLSYPQHHVGNS(ph)SPTSTSPSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSR 32 0 J3KPD3;I3L521;F5GXV8 J3KPD3 RBM7 1 SGSSHAPQDVSLSYPQHHVGNS(0.497)S(0.497)PT(0.004)S(0.001)TSPSSR;SGSSHAPQDVSLSYPQHHVGNS(0.393)S(0.283)PT(0.086)S(0.164)T(0.049)S(0.015)PS(0.005)S(0.005)R;SGSSHAPQDVSLSYPQHHVGNS(0.55)S(0.39)PT(0.01)S(0.034)T(0.01)S(0.003)PS(0.001)S(0.001)R 194.23 2.375e-20 490000000.0 128275.0 199710.0 245234.0 257899.0 262867.0 276222.0 268028.0 147616.0 229319.0 250689.0 True False 127584.38165269223 206357.22662275576 279760.8155878601 290548.98695701984 296341.554315223 257127.4232966476 255062.46167360907 158631.85549885983 172806.40516716902 234689.81339434942 0.5436298227324938 0.8792764527705069 1.192044987132773 1.2380127742008564 1.2626945755727375 1.0956053847322136 1.0868067002338422 0.6759213499919173 0.7363183031587414 1.0 17.840395698128354 1.7483079552689402 24.994528237534997 0.779383323388172 1.0600710306276486 0.20323482674768778 0.21277760419730304 3.493542380259257 8977.286159244217 0.10455963837278644 0.05798368940555395 56.01546625704747 -1.7483079552689402 0.28068770723947667 SGSSQELDVKPSAS(ph)PQER ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SGSSQELDVKPS(0.026)AS(0.974)PQER;SGSSQELDVKPS(0.001)AS(0.999)PQER 234.99 5.3426e-24 1069050000.0 1107250.0 893420.0 901300.0 772620.0 831640.0 1101920.0 1026150.0 1026130.0 1386890.0 1067570.0 True False 1101288.6890270386 923156.9446162052 1028195.2057599623 870433.6127814867 937544.4244835307 1025746.8640406705 976511.2042263253 1102705.0311825604 1045109.5428738792 999436.768607339 1.1019093189473355 0.9236771886055126 1.0287746439354004 0.8709241446003521 0.9380727765198673 1.026324922456068 0.9770615159446663 1.1033264592807808 1.0456985131037182 1.0 19.930755769268362 1.7597215794626557 24.99999999991888 1.0590599851566112 0.9764617631634894 0.18465667269820463 0.06479557676972723 13.801065014752185 16318.651911378282 0.028950478020954514 0.01605476932664222 57.507114851169476 -1.7597215794626557 -0.08259822199312172 SGSSS(ph)PDSEITELKFPSINHD ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSSSPDSEITELKFPSINHD 21 1 P17812;B4E1E0;P17812-2 P17812 CTPS1 CTP synthase 1;CTP synthase 1 S(0.006)GS(0.028)S(0.132)S(0.827)PDS(0.006)EITELKFPSINHD;S(0.001)GS(0.007)S(0.085)S(0.644)PDS(0.263)EITELKFPSINHD 238.7 4.0632e-30 1033670000.0 456610.0 546580.0 502020.0 469410.0 523690.0 669290.0 632760.0 608500.0 715670.0 679420.0 True False 454151.66249414015 564772.5848854132 572700.0523639361 528837.2578703084 590378.817346184 623023.5576391924 602150.9814220627 653909.3599003907 539302.7179866813 636058.8339192735 0.7140088908061288 0.8879250703985856 0.9003884889626756 0.8314282102045716 0.9281827181117541 0.9795061783832792 0.9466906979527712 1.0280642686323933 0.8478818141139564 1.0 19.278800691955688 6.292994175947564 0.42205284089804307 0.9709313716119858 5.905131280525769e-11 0.5816772174235609 0.05691742934604285 13.22072408755417 0.6543265290643241 0.03821200831652845 8.50324902413934 1963333.9476124267 -6.292994175947564 -0.9709313715529345 SGSSSPDS(ph)EITELKFPSINHD ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSSSPDSEITELKFPSINHD 21 1 P17812;B4E1E0;P17812-2 P17812 CTPS1 CTP synthase 1;CTP synthase 1 S(0.002)GS(0.01)S(0.061)S(0.393)PDS(0.509)EIT(0.026)ELKFPSINHD;SGS(0.001)S(0.005)S(0.028)PDS(0.956)EIT(0.009)ELKFPSINHD 186.82 1.8771999999999998e-17 922490000.0 369614.0 403010.0 393780.0 370749.0 425290.0 525290.0 538020.0 450940.0 613770.0 531770.0 True False 367624.03929197625 416423.94422531064 449220.8012028817 417685.7853862482 479448.1606086774 488977.9386996549 511993.91716400924 484591.4326269221 462514.607596637 497831.98332879844 0.7384500225032248 0.8364748713830205 0.9023542404791397 0.8390095441304405 0.9630722345374519 0.9822147934932983 1.0284472157463964 0.9734035756133179 0.9290576400977522 1.0 18.92529939400367 5.064910493535551 0.4679506682919495 0.992957446114798 0.49280594889564483 0.8052185567030183 0.03786863533460903 2.757052296144282 0.37330642238004846 0.02533035002670418 0.8128679449314875 116120.92683005292 -5.064910493535551 -0.5001514972191532 SGSTGS(ph)SLSVSVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSTGSSLSVSVR 13 0 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 SGST(0.001)GS(0.977)S(0.022)LSVSVR;SGST(0.001)GS(0.916)S(0.083)LSVSVR 198.98 4.459600000000001e-07 0.0 299260.0 354470.0 308210.0 353120.0 331440.0 340320.0 350700.0 295380.0 386620.0 327550.0 True False 297648.8174109116 366268.31966836023 351603.2889906558 397824.955793791 373646.91940120864 316794.4794271099 333735.30119589966 317422.7555092486 291342.6814425794 306645.47857033607 0.970661034360039 1.1944357418084295 1.1466116853570618 1.2973449262925976 1.218498055615401 1.0330968547264783 1.0883424818518885 1.0351457226408787 0.950096126644024 1.0 18.226212153306353 2.725576197871079 23.387691133374933 1.0300233944333377 1.1733914786026787 0.42147229191159796 0.08389594038705848 335.39267603252955 604111.2587157949 0.027576903054307697 0.026174885657093003 531.5892597674844 -2.725576197871079 0.143368084169341 SGSTS(ph)PLGFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSTSPLGFAR 11 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 SGST(0.001)S(0.999)PLGFAR;SGST(0.003)S(0.996)PLGFAR 168.71 1.8609e-05 1152290000.0 1647330.0 1977690.0 1763130.0 1934810.0 1898510.0 2018300.0 1931640.0 1730690.0 2112400.0 1959350.0 True False 1638460.9583155676 2043516.216111151 2011363.3785993154 2179756.7476194613 2140273.9951496185 1878779.6715671576 1838199.1936186156 1859842.876065747 1591827.3247098064 1834302.6055160684 0.8932337300227504 1.1140562140433867 1.0965275699608092 1.1883299631503286 1.166805296309039 1.024247398393994 1.002124288593839 1.013923695290447 0.8678106436325738 1.0 20.80680022977571 2.438977981137893 3.140731383747381 0.9771390072583029 1.0987033347621573 0.3110736858962265 0.08374721658185201 0.31879559687688397 6.500141883374675 0.03148466463716799 0.026438193141993013 274.7754837566131 -2.438977981137893 0.12156432750385437 SGSYS(ph)GRSPS(ph)PYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGSYSGRSPSPYGR 14 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 SGSYS(0.735)GRS(0.265)PS(0.991)PY(0.009)GR;S(0.007)GS(0.008)Y(0.006)S(0.926)GRS(0.055)PS(0.998)PYGR 129.42 0.00081328 2789700000.0 1874220.0 2217200.0 1825010.0 2350320.0 2299480.0 2374400.0 2474800.0 2212390.0 2654600.0 2292400.0 True False 1864129.4077654164 2290998.1616742956 2081955.5447287129 2647870.271016264 2592305.147914229 2210263.3167363945 2355084.469345917 2377489.776088789 2000409.3998175748 2146097.0693776202 0.8686137427632871 1.0675184241963005 0.9701124774064815 1.2338073187827243 1.2079160746750432 1.0298990424405094 1.0973802177684835 1.1078202426222379 0.9321150605725883 1.0 21.033283900937054 5.185633536960214 1.3597948550753585 1.088991736531338 0.47907116858484033 0.29642410099840333 0.09214468572620273 4.5681362993220045 3.2857618602331407 0.02495895680593169 5.15534144073969 153332.26002482587 -5.185633536960214 -0.6099205679464976 SGSYSGRS(ph)PSPYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGSYSGRSPSPYGR 14 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 SGSYS(0.011)GRS(0.987)PS(0.002)PYGR 134.08 2.4724e-05 461440000.0 176360.0 304500.0 297000.0 314000.0 337420.0 294750.0 333690.0 256520.0 310760.0 289370.0 True False 175410.49735543824 314635.0984258626 338815.01842972194 353752.36780485447 380388.43695497187 274374.6262668684 317548.1398804099 275662.8249821664 234177.36197065833 270902.15885787876 0.6475049814847081 1.1614344446436364 1.250691466831284 1.3058307445620643 1.4041543210976477 1.012818160710234 1.1721875573793512 1.0175733783162104 0.8644352003614446 1.0 18.047412365064762 1.5728562042263399 3.3932386446020013 0.9319655447524208 1.1539583085484661 0.1486889769018801 0.19540856230098724 0.3535745589471619 9.346444721004719 0.12895120300137217 0.052511800448988004 37.39867400105704 -1.5728562042263399 0.22199276379604538 SGT(ph)FDLLEMDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SGTFDLLEMDR 11 0 H0YA26;E9PHT6;Q9NVE7;H0YA31 H0YA26 PANK4 Pantothenate kinase 4 1 S(0.097)GT(0.903)FDLLEMDR;S(0.011)GT(0.989)FDLLEMDR;S(0.031)GT(0.969)FDLLEMDR;S(0.007)GT(0.993)FDLLEMDR 231.66 1.0099e-11 299063000.0 527507.0 404675.0 354789.0 353329.0 340194.0 529563.0 427653.0 435671.0 782417.0 446876.0 True False 524666.9609235378 418144.36274379696 404740.2073187298 398060.4151723611 383515.68941218563 492955.5562672143 406965.7905968918 468182.9823125116 589600.8142006592 418355.9910902077 1.2541160449412732 0.999494142904804 0.9674540724611207 0.9514873066238213 0.9167209208902911 1.1783159958642044 0.9727739037186157 1.1191018947582372 1.4093280047554688 1.0 18.674371569866594 1.4934767270289837 5.9541460073661705 1.2237549130388048 1.0296877081149407 0.19898258853875528 0.13575988800998046 0.18020975561339603 14.841557550681982 0.07471384287762084 0.03277138113669054 31.15133957714378 -1.4934767270289837 -0.1940672049238641 SGT(ph)PPRQGS(ph)ITSPQANEQSVTPQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.436)GT(0.468)PPRQGS(0.338)IT(0.301)S(0.057)PQANEQS(0.269)VT(0.131)PQRR 48.76 0.042531 0.0 60945.0 67359.0 58988.0 71934.0 76969.0 75464.0 84414.0 67147.0 129950.0 83656.0 True False 60616.87889162605 69601.00359562473 67292.99766711272 81040.83702444081 86770.54591899492 70247.35130314826 80330.57232720463 72157.85010555724 97925.56374078742 78317.00245849509 0.7739938581504138 0.8887087274887788 0.8592386781245279 1.0347796069875026 1.107940079358628 0.8969616953914519 1.0257105073674986 0.9213561275381811 1.2503742567609644 1.0 16.257037927164415 3.770421778711265 5.596652591793571 1.021627966056784 0.8433261601130866 0.4541095066285069 0.09647050150959297 0.18481730012354058 17.305425396433105 0.02444729972066273 0.04359552513600873 5894.158071319422 -3.770421778711265 -0.17830180594369738 SGT(ph)PPRQGSITSPQANEQSVTPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGTPPRQGSITSPQANEQSVTPQR 24 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.148)GT(0.852)PPRQGSITSPQANEQSVTPQR 118.61 0.00079902 473300000.0 33881.0 35761.0 41141.0 48048.0 52152.0 54626.0 50722.0 34169.0 35231.0 56079.0 True False 33698.588460533 36951.283267019004 46933.29519601753 54130.87187352754 58793.24807087814 50849.833195772495 48268.38308314351 36718.86428666634 26548.792121213373 52499.99020835263 0.6418779951538283 0.7038340982612248 0.8939676942749323 1.0310644184637474 1.11987160069078 0.968568431993391 0.9193979444869329 0.6994070692383568 0.5056913728145709 1.0 15.68002953325464 -1.0510682229762887 19.408444215758873 1.0000000000000628 0.8415545197123239 0.06944923642869028 0.18170339922940212 0.0 0.0 0.19098067432997773 0.045014576631435634 0.0889061444929254 1.0510682229762887 -0.15844548028773897 SGT(ph)PTQDEMMDKPTSSSVDTMSLLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 S(0.189)GT(0.804)PT(0.007)QDEMMDKPTSSSVDTMSLLSK;S(0.028)GT(0.943)PT(0.028)QDEMMDKPT(0.001)SSSVDTMSLLSK 206.11 5.0684e-25 1899810000.0 1703890.0 1079830.0 972980.0 929620.0 898400.0 1603140.0 1540910.0 1548680.0 2584800.0 1414860.0 True False 1694716.4455599757 1115771.4887789798 1109967.126706233 1047309.7966839139 1012805.9147660101 1492318.705185638 1466370.2964521642 1664250.3656376977 1947810.6745454923 1324562.4234774117 1.2794538147253098 0.842369879291693 0.8379877814985907 0.7906836085039929 0.7646343402276669 1.1266503403197947 1.107060166030122 1.2564529509062272 1.4705314298678722 1.0 20.33708440542065 2.3674283198247412 2.015924853243558 1.2469201151116094 0.8930322654067889 0.3925145663891836 0.17780697023797906 0.30522462792208394 2.5381746737186304 0.07751496223319541 0.05749388074609972 233.03884536171873 -2.3674283198247412 -0.35388784970482046 SGTHNMYR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGTHNMYR 8 0 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 0 ;; 116.73 0.002216 339036000.0 238201.0 390072.0 452110.0 371773.0 290296.0 286030.0 355137.0 264917.0 452328.0 317688.0 False True 236918.55228261917 403055.31071649666 515763.1581894329 418839.4236812558 327263.4748808032 266257.41934219585 337957.6665549135 284686.4517612684 340857.82528467005 297412.8798536193 0.7965981580865824 1.355204626359398 1.734165509050184 1.4082760097256048 1.1003675262546657 0.8952450864711792 1.1363249188174014 0.9572095596578918 1.146076207097801 1.0 18.182107600975044 3.1386994324725066 4.964838411222831 1.0257839321386015 1.3541448324072027 0.27577143854525166 0.22549597734752944 0.26101201197316615 10.533391473188988 0.06784740974864946 0.08228144053648788 1376.256656336167 -3.1386994324725066 0.3283609002686012 SGTICSSELPGAFEAAGFHLNEHLYNMIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGTICSSELPGAFEAAGFHLNEHLYNMIIR 30 0 A0A0C4DGQ5;K7ELJ7;P04632;K7EKD8;U3KQE2;A0A075B7C0 A0A0C4DGQ5 CAPNS1 Calpain small subunit 1 0 ; 178.15 1.0313e-13 1150350000.0 475580.0 513740.0 488310.0 528070.0 568060.0 569210.0 582080.0 346072.0 613620.0 577900.0 False True 473019.5301219053 530839.5253376113 557059.8035333923 594923.6078557634 640399.0738445901 529861.8524762138 553922.5666384634 371897.64995800884 462401.5730867403 541017.9272349179 0.8743139668946929 0.9811865718584831 1.0296512841643948 1.0996375127462992 1.183692890026026 0.9793794730320278 1.0238525171790511 0.6874035613916458 0.8546880792842171 1.0 19.04531687459685 1.7647667174455308 24.999999999999428 0.8169326457057534 1.0303343607884214 0.3649893349330414 0.10461138938072104 14.852758058374052 14178.34424030816 0.04861932193001156 0.02696389895102208 58.1790623283539 -1.7647667174455308 0.21340171508266803 SGTNS(ph)PPPPFSDWGR ddPTM_BT-474_Trastuzumab_2h_R1 7 SGTNSPPPPFSDWGR 15 0 D6RAU6;D6REP2;D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAU6 FBXO4 F-box only protein 4 1 SGT(0.001)NS(0.998)PPPPFSDWGR;SGTNS(0.992)PPPPFS(0.008)DWGR;SGTNS(1)PPPPFSDWGR;SGTNS(1)PPPPFSDWGR;SGTNS(1)PPPPFSDWGR;SGTNS(1)PPPPFSDWGR;S(0.008)GT(0.002)NS(0.99)PPPPFSDWGR 242.24 6.758500000000001e-18 3564580000.0 2183070.0 2318740.0 2117300.0 2160410.0 2201100.0 2413720.0 2351910.0 2125690.0 2473990.0 2263550.0 True False 2171316.593681876 2395917.859192073 2415397.436098487 2433917.6844881736 2481397.0380581734 2246865.2176857153 2238139.128131305 2284319.7818351085 1864308.3142675683 2119088.301077349 1.0246465862597487 1.1306361598872416 1.139828592735137 1.1485683174461228 1.1709738743763654 1.060298061455676 1.0561802106091709 1.0779729097054405 0.8797690560227008 1.0 21.015012274482203 1.378513337009577 4.34150018138425 0.9415214974616122 1.1063670855581427 0.6064783289585909 0.05188244061423031 0.14127892980320156 4.11465200459909 0.03889383528054671 0.013454563448171612 23.90635349671352 -1.378513337009577 0.1648455880965305 SGTS(ph)QEELR ddPTM_BT-474_Trastuzumab_2h_R1 5 SGTSQEELR 9 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 SGT(0.261)S(0.738)QEELR;SGT(0.014)S(0.985)QEELR;S(0.002)GT(0.038)S(0.959)QEELR;SGT(0.014)S(0.986)QEELR;SGT(0.047)S(0.953)QEELR 142.51 0.00010926 8814140000.0 7396150.0 7841870.0 7190660.0 7555780.0 7666990.0 7934410.0 7917600.0 7317430.0 8825610.0 7932930.0 True False 7356329.950189524 8102881.902439482 8203042.425662842 8512340.973288422 8643335.730689948 7385922.912292121 7534595.439830788 7863493.78375665 6650656.672615083 7426643.615676936 0.9905322418677819 1.0910557072289118 1.1045423545499076 1.1461895054880085 1.1638279925597468 0.9945169439262095 1.0145357485481028 1.058822018489963 0.8955131034665756 1.0 22.824278918304746 2.7172684647914465 24.791384890901455 1.0032789967355773 1.1016794995394956 0.45542826989601304 0.05764642884704011 751.3819757405827 874866.1189938457 0.019168580352508752 0.01809092369803456 521.5169940066622 -2.7172684647914465 0.09840050280391832 SGTSSPQS(ph)PVFR ddPTM_BT-474_Trastuzumab_2h_R1 6 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 SGTSSPQS(1)PVFR;SGTSSPQS(1)PVFR;SGTSSPQS(1)PVFR;SGTS(0.008)S(0.063)PQS(0.929)PVFR;SGTSSPQS(1)PVFR;SGTSS(0.002)PQS(0.998)PVFR 281.6 4.5523e-28 7684230000.0 2961180.0 3209270.0 3027170.0 3080060.0 2948020.0 3245370.0 3352830.0 2909920.0 3529350.0 3155250.0 True False 2945237.3358980264 3316088.6119053145 3453369.2233666764 3469995.2801943305 3323432.8727164883 3021025.2106792377 3190640.803845593 3127073.0066743586 2659588.983367043 2953879.2436545687 0.9970743869184542 1.1226215895686436 1.1690962759513939 1.1747248258873366 1.12510790001175 1.022731452942401 1.080152755296151 1.0586326483697122 0.9003716008636065 1.0 21.494179418398556 1.4349740274365186 3.38972164996086 0.9514129573533542 1.1024853206128002 0.49378992517666465 0.05858715858638289 0.19480068869237718 4.038052020576823 0.046121073000555964 0.015934187204980594 27.225384844155897 -1.4349740274365186 0.15107236325944606 SGTT(ph)PKPVINSTPGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SGTTPKPVINSTPGR 15 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 S(0.21)GT(0.136)T(0.655)PKPVINSTPGR;S(0.002)GT(0.044)T(0.953)PKPVINSTPGR;S(0.001)GT(0.027)T(0.972)PKPVINSTPGR 141.6 7.6551e-06 2406610000.0 2746310.0 2242920.0 2065300.0 1933570.0 1917780.0 2752130.0 2610780.0 2648310.0 3849600.0 2678110.0 True False 2731524.1721037277 2317574.236326228 2356076.2880905895 2178359.7637466 2161997.915427382 2561881.730917171 2484486.5972518697 2845940.340045694 2900917.6619971925 2507190.726954673 1.0894760190109423 0.9243709349313204 0.9397275854447529 0.8688448550511819 0.8623188863072356 1.0218136591582436 0.990944394673005 1.1351112260623581 1.1570390839474567 1.0 21.257640318334236 2.073912010597827 1.9355644774309018 1.1082657366798114 0.9369618255178809 0.4274331602447681 0.0745166738132413 0.2861929086417178 2.045175738040995 0.04149069487861846 0.022827673775234564 118.55285320948346 -2.073912010597827 -0.17130391116193056 SGVS(ph)ITIDDPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGVSITIDDPVR 12 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 S(0.001)GVS(0.997)IT(0.002)IDDPVR 135.94 0.00012464 150460000.0 427650.0 310090.0 307450.0 356630.0 379370.0 378730.0 296370.0 316540.0 490170.0 403290.0 True False 425347.57991638215 320411.15819663653 350736.2875966935 401779.3214339025 427680.5207978414 352549.2865345243 282033.4508566549 340161.8221575515 369374.1714414903 377551.68692606007 1.1265943038937671 0.8486550829777806 0.9289755541878479 1.064170378114579 1.1327734336983604 0.9337775428972398 0.7470061997415695 0.9009675600368036 0.9783406728992545 1.0 18.526314637728703 2.4856107402607326 24.940540804217214 0.8866030678079448 1.0105929174861212 0.20921061861776358 0.1025224255197662 580.6814497063912 1705941.216483938 0.035404526296478805 0.03102049934899953 305.9220214181163 -2.4856107402607326 0.12398984967817639 SGVSDHWALDDHHALHLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGVSDHWALDDHHALHLTR 19 0 Q9HCC0-2;Q9HCC0;D6R9R1;D6RDF7;D6RD67 Q9HCC0-2 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial 0 ; 270.42 9.255499999999999e-40 340120000.0 159158.0 249950.0 292020.0 270950.0 329780.0 439270.0 253830.0 16873.8 279520.0 135655.0 False True 158301.1110121162 258269.43465203434 333133.8777166582 305252.2422188705 371775.52824079996 408904.2988303546 241551.273175236 18133.008639420255 210636.0413761054 126997.38175991132 1.2464911387809916 2.0336595217395343 2.623155478484179 2.403610515340782 2.9274267161164156 3.2197852677261376 1.9020177410577561 0.14278253919990827 1.6585857004069031 1.0 16.95443922843481 1.9620108099290359 7.774481784460413 0.8786632805116706 2.4366971007366076 0.5441617693105998 0.6028435200492334 0.19773867105023388 35.790068482675636 0.26009847110095796 0.16592948015298506 91.62432958498084 -1.9620108099290359 1.5580338202249369 SGVSS(ph)DNEDDDDEEDGNYLHPSLFASK ddPTM_BT-474_Trastuzumab_2h_R1 4 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872-2;Q12872 Q12872-2 SFSWAP Splicing factor, suppressor of white-apricot homolog 1 S(0.026)GVS(0.146)S(0.828)DNEDDDDEEDGNYLHPSLFASK;S(0.001)GVS(0.143)S(0.856)DNEDDDDEEDGNYLHPSLFASK;SGVS(0.029)S(0.97)DNEDDDDEEDGNYLHPSLFASK;S(0.001)GVS(0.108)S(0.892)DNEDDDDEEDGNYLHPSLFASK 325.11 2.910299999999999e-83 3993910000.0 1133990.0 1520130.0 1511040.0 1598800.0 1646930.0 2006920.0 1967290.0 1886130.0 1855430.0 1961030.0 True False 1127884.7238381344 1570726.6081120116 1723781.2978048753 1801207.9160713418 1856656.773381103 1868186.3441815188 1872124.6669223902 2026882.5981740735 1398184.137988218 1835875.3864777496 0.6143579962701374 0.8555736515023257 0.9389424306799307 0.9811166538525692 1.0113196064702539 1.0175997553765128 1.0197449569353327 1.1040414905625944 0.7615898923677649 1.0 20.808036705738274 5.05918465119194 1.0692963320748883 1.0020398732188023 0.1646032504215651 0.642169817040203 0.08326511789857226 1.818858933889109 1.076895736421535 0.023831427309869313 2.0281712141160786 114600.00885583734 -5.05918465119194 -0.8374366227972372 SGWSSQSDYYASYYSSQYDYGDPGHWDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SGWSSQSDYYASYYSSQYDYGDPGHWDR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 ; 166.85 5.9312e-12 1040790000.0 179224.0 203740.0 193320.0 215980.0 195035.0 202165.0 207223.0 181927.0 194599.0 210701.0 False True 178259.07789765848 210521.3627365691 220537.7756324372 243323.04585507177 219871.55118698644 188189.80939522115 197198.83182126595 195503.31654658736 146642.68394300487 197253.88178979827 0.9037037764743133 1.067260937155646 1.1180402313575315 1.2335526360610063 1.114662734096612 0.9540486995118496 0.9997209181992627 0.9911253191707711 0.7434210298546786 1.0 17.589694165974848 2.731399599628282 21.14476106826114 0.9467967268167082 1.0961397208790806 0.3415696939027085 0.103238302287709 83.17548797140859 245594.6776568674 0.034139493062639324 0.03294979456928316 538.7652790028885 -2.731399599628282 0.1493429940623724 SGYHDDS(ph)DEDLLE ddPTM_BT-474_Trastuzumab_2h_R1 4 SGYHDDSDEDLLE 13 0 Q99523;Q99523-2 Q99523 SORT1 Sortilin 1 S(0.001)GYHDDS(0.999)DEDLLE;S(0.05)GY(0.025)HDDS(0.925)DEDLLE;SGYHDDS(1)DEDLLE;SGYHDDS(1)DEDLLE 168.61 3.1385e-05 6241070000.0 6339870.0 6860390.0 6174560.0 6590880.0 6398900.0 7889900.0 7110160.0 5834850.0 7203840.0 6730340.0 True False 6305736.844345768 7088733.933956673 7043884.377762379 7425284.732221846 7213761.985748238 7344489.783826839 6766214.397351129 6270276.135767955 5428550.158510452 6300803.9390660245 1.0007829009325553 1.1250522953119289 1.1179342264705514 1.1784662408210886 1.1448954856413993 1.165643282167501 1.07386525001984 0.9951549352125065 0.861564684603586 1.0 22.587104487604485 1.6915986392444433 2.4955252125541008 0.9307708368708193 1.1246144464949157 0.6509185565940351 0.05619704944394337 0.14369175144774823 1.9645280248030734 0.0361733706003591 0.015285435890623802 49.158501889300425 -1.6915986392444433 0.1938436096240964 SGYLLPDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SGYLLPDTK 9 0 P14625;H0YIV0 P14625 HSP90B1 Endoplasmin 0 82.287 0.041223 0.0 217490.0 221380.0 200450.0 181530.0 193950.0 241420.0 250220.0 220810.0 310720.0 214140.0 False True 216319.05800541042 228748.4994729638 228671.6176573662 204511.67938730976 218648.38286828526 224731.20364155152 238115.90266677516 237287.96345046096 234147.21943468592 200473.40186552255 1.079041189466706 1.1410416411570057 1.1406581398302356 1.020143707265945 1.0906603112115316 1.1210025946100375 1.1877680552680159 1.1836381347468408 1.167971497743884 1.0 17.613051311904066 2.4595075305241405 6.17065596933183 1.1552567609238114 1.0962303017163026 0.05297869973605229 0.060194200753856814 0.2804475790692765 39.45450619553917 0.020125748779994714 0.017194455821230168 288.0763000829328 -2.4595075305241405 -0.05902645920750871 SGYSS(ph)PGSPGT(ph)PGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SGYSSPGSPGTPGSR 15 0 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 2 SGYSS(1)PGS(0.171)PGT(0.829)PGSR 246.38 1.9073e-17 332870000.0 336800.0 360370.0 321200.0 390790.0 342300.0 464230.0 451840.0 353820.0 461560.0 419900.0 True False 334986.70622199774 372364.6976017347 366422.1680795514 440263.97393139894 385889.8760289459 432138.8727798748 429982.77300357947 380223.84506155504 347814.722587132 393101.62250552373 0.8521631228252959 0.947247928483181 0.9321308972068733 1.119974959974154 0.9816542439316019 1.0993057470115186 1.0938209063167565 0.9672405894387075 0.8847959475981166 1.0 18.584542792856265 4.328430628820992 1.7045330958198701 1.0210190536849668 0.8600946032331646 0.33933304973369616 0.07062798495059798 0.5478914117757958 2.657195492702777 0.019632143980923163 0.1121663655882 21302.50269007876 -4.328430628820992 -0.16092445045180226 SGYSS(ph)PGSPGTPGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SGYSSPGSPGTPGSR 15 0 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 1 SGYS(0.008)S(0.98)PGS(0.013)PGTPGSR;SGYS(0.208)S(0.791)PGSPGTPGSR;SGYS(0.002)S(0.789)PGS(0.209)PGTPGSR;SGYS(0.05)S(0.944)PGS(0.006)PGTPGSR;SGYS(0.088)S(0.91)PGS(0.002)PGTPGSR 333.86 6.017699999999998e-69 1338029000.0 1417188.0 1636602.0 1515615.0 1538637.0 1533487.0 1983030.0 1902058.0 1601573.0 1898700.0 1929288.0 True False 1409558.0172723904 1691075.3082232012 1729000.4180382614 1733428.2864399957 1728767.4797604454 1845947.803650508 1810048.187972829 1721090.5098829074 1430790.8262765112 1806159.1880934406 0.7804173776954303 0.9362825377580807 0.9572801940361485 0.959731732322986 0.9571512251837065 1.0220294068315583 1.0021531877727199 0.9529007859488118 0.7921731571107176 1.0 20.784493621474063 4.749532636708283 3.167475496681581 0.9582734397083112 0.7515963843716347 0.43434568618358416 0.05946563990169495 0.3423644354001465 5.244619484710834 0.014447902917835211 0.1778544661036801 56173.64905915678 -4.749532636708283 -0.20667705533667657 SHAIACVNQFIMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHAIACVNQFIMDR 14 0 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 0 174.59 2.5172e-06 712520000.0 219860.0 283130.0 256050.0 270710.0 225850.0 299550.0 263830.0 124120.0 348530.0 281790.0 False True 218676.2981887425 292553.81089430087 292099.6143735026 304981.8582434786 254610.658782172 278842.81356485304 251067.53497152627 133382.4646685892 262639.4515627286 263805.9209474437 0.8289286965333426 1.1089736342672325 1.1072519271911856 1.156084204433903 0.9651438370592765 1.0569998298878402 0.951713039911431 0.5056083054904674 0.9955783047608417 1.0 18.00911741971487 1.9864790407754258 22.99121522873214 0.7662624675781367 1.0423464458711555 0.2180699317813033 0.15762926798010926 215.32250417523355 366136.3659828293 0.06052704646982653 0.04100817839745958 96.93464871240697 -1.9864790407754258 0.2760839782930189 SHCFVTYSTVEEAVATR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHCFVTYSTVEEAVATR 17 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 290.27 5.7472e-46 385450000.0 127410.0 170290.0 145530.0 140280.0 137290.0 173450.0 153030.0 67299.0 180130.0 144680.0 False True 126724.03871658187 175957.999707521 166019.3590305638 158039.4336167676 154773.0677184167 161459.80975738156 145627.35426862986 72321.19311739752 135739.3751183381 135446.3985332203 0.9356028664394563 1.2990969240453052 1.2257199957210012 1.1668042511887537 1.1426886900979967 1.1920568690335542 1.0751659390405464 0.5339469627880851 1.002163044483209 1.0 17.04736250778966 1.9510381580490181 9.905378609251922 0.7958282015901168 1.1662090881033054 0.4555894900118258 0.15114487385245418 0.4197952278667933 83.12960397727619 0.059583702899650745 0.03802163212697802 89.33839749261848 -1.9510381580490181 0.37038088651318857 SHDDGNIDLESDSFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHDDGNIDLESDSFLK 16 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;P18583-8 P18583-7 SON Protein SON 0 228.51 4.0397e-15 256030000.0 141070.0 139660.0 114850.0 109990.0 114070.0 165410.0 138820.0 68392.0 162820.0 112410.0 False True 140310.49479435035 144308.49867374718 131019.88170590448 123914.72272247131 128596.1383541393 153975.5960332577 132104.7462561016 73495.75832753917 122695.19267622141 105235.89756095721 1.3332949881771703 1.3712858636489267 1.2450113007304573 1.177494805426965 1.2219797743412681 1.4631470781542804 1.255320183681436 0.6983905685316859 1.165906268867532 1.0 16.683267388184156 1.8783500537494195 7.968370956603284 0.9300911758216854 1.2983251757027172 0.5868998224199156 0.13089251893321832 0.17570997669940702 10.723972028509415 0.054357053957626696 0.033973099440017016 75.57010989059965 -1.8783500537494195 0.3682339998810318 SHDPEEAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHDPEEAIR 9 0 Q9NTI5-2;Q9NTI5;Q9NTI5-3;Q29RF7;Q29RF7-3 Q9NTI5-2;Q29RF7 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A 0 147.2 9.2968e-05 280190000.0 357630.0 395560.0 372700.0 395850.0 356670.0 404050.0 399530.0 177430.0 416930.0 346050.0 False True 355704.5598164286 408725.97547893075 425172.9204335269 445964.56941258546 402089.81035128294 376118.9745313926 380203.20754718524 190670.72757128396 314183.1880757713 323964.7927316897 1.0979728902548556 1.2616370193579676 1.31240471178502 1.376583441836956 1.2411528023179266 1.1609871904904723 1.173594217881795 0.5885538547677897 0.9698065812231035 1.0 18.305477509425387 1.8937469792027237 6.6395441481150375 0.8182642857982989 1.2451337172956034 0.6538546144483386 0.1264583679145716 0.13067786192699307 7.048105825296252 0.0542524572944892 0.033313669367257895 78.29733480872484 -1.8937469792027237 0.4268694314973045 SHEAEVLK ddPTM_BT-474_Trastuzumab_2h_R1 6 SHEAEVLK 8 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 ;;;;; 119.27 0.0017256 8383750000.0 9070280.0 8768880.0 8132040.0 7197070.0 6509340.0 9091600.0 9808380.0 3427140.0 12115900.0 7543630.0 False True 9021446.620282836 9060746.869900098 9276960.547041211 8108218.324067797 7338265.865119068 8463119.091324374 9333911.187749749 3682890.5894643026 9130098.789742235 7062189.074973433 1.2774292113266272 1.2829940934333004 1.3136097672485652 1.14811685696737 1.0390922399860376 1.198370505445043 1.3216739298055202 0.521494192574865 1.292814266626893 1.0 22.751684016005797 2.6446015616855454 0.7146794200185743 0.9317341104403166 1.2861102577733239 0.1654276382085017 0.21261080583581288 1.0016100350452835 1.0789436602526865 0.16140765450948413 0.14658452366805502 441.165519567266 -2.6446015616855454 0.35437614733300726 SHEGETAYIR ddPTM_BT-474_Trastuzumab_2h_R1 5 SHEGETAYIR 10 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;;;; 158.79 7.8813e-06 12187630000.0 2731780.0 3011050.0 2792550.0 2759050.0 2737130.0 2770510.0 2963970.0 1725310.0 3494810.0 2570460.0 False True 2717072.4000092903 3111270.9790318417 3185716.7667202754 3108345.4471082278 3085687.2812594487 2578991.1647790386 2820591.447635046 1854061.393146662 2633560.9035547567 2406411.0421184734 1.1290973788157685 1.292909201535598 1.3238456402343233 1.291693477425124 1.2822777269767585 1.0717168096555254 1.1721154026753264 0.7704674557653489 1.094393624971199 1.0 21.198451661454445 2.3006371367306375 1.5868352356798905 0.944610873293076 1.2687148181675825 0.5665565841810106 0.107052546697346 0.24095642393719305 1.2159962123607369 0.054905585678888744 0.03548339369184793 199.81916357912854 -2.3006371367306375 0.32410394487450644 SHEGETSYIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SHEGETSYIR 10 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 ;;; 185.33 1.4614e-06 2988210000.0 417960.0 600780.0 562245.0 700105.0 549663.0 566444.0 577593.0 362399.0 596139.0 483532.0 False True 415709.7497997211 620776.5991208202 641404.2088788527 788738.2212166176 619659.3249421511 527287.0595457505 549652.619970469 389443.0536048343 449228.5313033417 452672.5737874272 0.9183453424658689 1.3713589801275077 1.4169274791983595 1.7424033769428344 1.3688908072286703 1.164831028162448 1.2142388379566003 0.8603195248752022 0.9923917580089514 1.0 18.788108374661853 2.1732701472803124 1.6306473312614873 0.9438156920487166 1.378861020011963 0.42112823607830385 0.198132159725029 0.35448914027879114 1.8360393481329678 0.11755946824223816 0.06742878796768431 149.02878037564915 -2.1732701472803124 0.43504532796324646 SHELDIDENPAS(ph)DFDDSGSLLGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHELDIDENPASDFDDSGSLLGFK 24 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 SHELDIDENPAS(1)DFDDSGSLLGFK 234.48 1.5043e-37 30490000.0 20766.0 16005.0 16140.0 13510.0 13995.0 20780.0 18473.0 5077.3 27378.0 16383.0 True False 20654.198163319492 16537.716749773186 18412.371708605107 15220.364614788494 15777.180295136135 19343.527510858414 17579.390416287017 5456.193908006997 20631.058746404582 15337.422913808026 1.34665375528798 1.0782591601412097 1.200486666637376 0.9923677987053388 1.0286721820086346 1.261198026523984 1.1461762849650956 0.3557438520584104 1.3451450652658723 1.0 13.904768472441942 1.8938151467396784 23.85359972775201 0.8092670528874015 1.143243513590925 0.14474686103773737 0.25058365568836743 27.104135809574363 6073.928815443994 0.09846274972648018 0.06354293307362947 78.30962544465663 -1.8938151467396784 0.3339764607035234 SHELDIDENPASDFDDSGSLLGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHELDIDENPASDFDDSGSLLGFK 24 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 0 164.27 1.5720000000000002e-11 67480000.0 37515.0 40140.0 36334.0 35774.0 31566.0 40645.0 38299.0 23157.0 56303.0 34387.0 False True 37313.02340830833 41476.03563485757 41449.51137921054 40302.98473200912 35585.7429936597 37835.30681803853 36446.33105361211 24885.09292886337 42427.880071547115 32192.392219808156 1.1590633946535174 1.2883800418329006 1.2875561125186101 1.2519412803131316 1.1054084688917152 1.1752872094655413 1.1321411221868278 0.7730116096669397 1.3179474138439766 1.0 14.974432167157822 2.53503338974899 1.2549750895465777 1.0076764160317977 1.244941853189021 0.24201406136177994 0.13608207054893529 0.5158877956880964 1.6500201301631312 0.07129614115904859 0.05483292684149853 342.7941404855437 -2.53503338974899 0.23726543715722337 SHESSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHESSPK 7 0 P78356 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 68.915 0.061157 25903000.0 43740.0 54300.0 59242.0 53718.0 61836.0 48912.0 66295.0 27730.0 72481.0 57061.0 False True 43504.508699970866 56107.34267495687 67582.75865930515 60518.693292169366 69710.44806931331 45530.828566463286 63088.05757850637 29799.353410086867 54619.02874564061 53419.318127620085 0.8143965558683753 1.050319334681791 1.2651370520651022 1.132899022551892 1.3049670140448686 0.8523288982777542 1.1809970585507554 0.5578385208679651 1.0224583663751452 1.0 15.705073940318814 1.7637076480890026 24.999999999142084 0.8168239996063618 1.092645864861005 0.21730115227782487 0.19082417979663077 18.250408613812915 18156.059224734065 0.08552455467238511 0.047430594320923676 58.0373598711376 -1.7637076480890026 0.27582186525464314 SHFEQWGTLTDCVVMR ddPTM_BT-474_Trastuzumab_2h_R1 7 SHFEQWGTLTDCVVMR 16 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8W646 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ;;;;;; 241.8 6.407500000000001e-20 4716550000.0 2196774.0 2434821.0 2179475.0 2198207.0 2124985.0 2261294.0 2184849.0 1203095.0 2510500.0 2146675.0 False True 2184946.8128685364 2515862.545104623 2486326.1356637026 2476499.7808127566 2395589.2439771253 2104976.068293505 2079159.5069363005 1292876.0580926219 1891820.9139765026 2009672.3636390707 1.0872154349140188 1.2518769679197628 1.237179841176458 1.23229031041078 1.1920297493862357 1.0474225084539952 1.0345763541134656 0.6433267837507156 0.9413578791275383 1.0 20.93852888770279 2.252750635516813 1.9223655126344945 0.8301269044818438 1.2032304789656034 0.6297489407879482 0.10673804901473587 0.18018742752237782 1.3443780108201124 0.05100375319728028 0.03342904767814856 178.9578013810985 -2.252750635516813 0.37310357448375964 SHFEQWGTLTDCVVMRDPNTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHFEQWGTLTDCVVMRDPNTK 21 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;Q32P51;F8W646 F8W6I7 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 0 ; 292.14 5.645399999999998e-55 1025640000.0 820030.0 907440.0 871140.0 1005160.0 946070.0 994060.0 1002930.0 533790.0 1372190.0 914690.0 False True 815615.0495938984 937643.5918409373 993788.939915381 1132413.1529386241 1066546.4067037837 925342.9719655409 954414.444335341 573624.1203306975 1034032.1609039712 856313.701094493 0.9524722640212624 1.0949767481735875 1.1605430797675838 1.3224279273953412 1.2455089826784072 1.0806121293899869 1.1145616882171347 0.669876144218553 1.207538965664485 1.0 19.707779883335764 1.9690805494576054 24.478129041703305 0.914898116237859 1.1495106208303552 0.20688997254008057 0.15449906767597585 608.358884030915 481621.03398621606 0.06355665515151271 0.041077449245131015 93.12805859053734 -1.9690805494576054 0.23461250459249616 SHFGGPDYEEGPNSLINEEEFFDAVEAALDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHFGGPDYEEGPNSLINEEEFFDAVEAALDR 31 0 Q9Y5P4-3;Q9Y5P4;Q9Y5P4-2;A0A2R8Y7C5;A0A2R8YE18;A0A2R8Y7Q9;A0A2R8Y5S9;A0A2R8YEA4;A0A2R8YE59;A0A2R8YFA1 Q9Y5P4-3 COL4A3BP Collagen type IV alpha-3-binding protein 0 ; 289.76 3.6256999999999983e-81 79337000.0 26154.9 26943.1 22082.1 26724.5 29961.1 30146.8 23770.0 6847.0 25551.2 15356.4 False True 26014.084924482562 27839.88479605212 25191.067738946025 30107.81895987527 33776.468491647254 28062.822673933893 22620.154289781967 7357.957908361508 19254.44912853871 14376.341404724504 1.8095066186960154 1.9365069326263415 1.7522585913734263 2.09426154487267 2.3494481343179063 1.9520142075028626 1.5734291258795714 0.5118101818271691 1.3393149610519899 1.0 13.811408954573837 1.972623890711042 4.395340655810867 0.9146211348016722 1.9816870427197408 0.7821201165327908 0.24312114625389253 0.08815411395339331 3.932771730444333 0.1097192803502484 0.06767851352143621 93.89098402537671 -1.972623890711042 1.0670659079180687 SHFTDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHFTDK 6 0 B7Z7P8;P62495-2;P62495 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 ; 117.7 0.022498 449360000.0 858440.0 768690.0 596350.0 636170.0 622430.0 717660.0 655250.0 423630.0 959630.0 697280.0 False True 853818.2544216495 794275.3819670823 680310.8964328787 716709.0567720197 701692.7710683525 668049.853389925 623553.0542019197 455243.42174955294 723142.0448831986 652778.9934285579 1.3079744645843816 1.216760021328735 1.0421764537178446 1.0979352338035346 1.0749316049263278 1.0233936142478495 0.9552284317956736 0.6973928792630123 1.1077900057492298 1.0 19.316235106249792 4.421008916448465 0.46078519685982405 0.898733335394533 1.498526887041188 0.5063269026109739 0.10820002648920692 2.858124691338827 0.5853918375634912 0.0825923734055631 0.91012654655729 26363.85512587811 -4.421008916448465 0.599793551646655 SHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILDFR 37 1 O00625 O00625 PIR Pirin 0 84.713 0.00057437 100450000.0 80097.0 71803.0 80625.0 95753.0 68572.0 87650.0 77369.0 49936.0 96451.0 66069.0 False True 79665.7666516133 74192.91944916983 91976.29919493728 107875.31998222363 77304.23774191321 81590.96180590673 73626.36589171819 53662.47788987009 72681.94342718489 61852.41985548333 1.2879975728961037 1.1995152270924854 1.4870283072163977 1.7440759833531443 1.249817515992627 1.3191231967405967 1.1903554632744264 0.8675889805968976 1.1750864977797875 1.0 15.916542418489382 2.1622075007997843 2.1117952167098464 1.0009510603623835 1.4002565597621026 0.5150297753417816 0.15985776718041436 0.25703017677960094 2.2745667969961785 0.08412520339875024 0.05200183159169822 145.28055852255332 -2.1622075007997843 0.39930549939971915 SHGLEPAAPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 SHGLEPAAPSPR 12 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR 123.1 0.00020897 300530000.0 260465.0 319562.0 270744.0 307172.0 272943.0 292881.0 266495.0 89260.0 278511.0 218462.0 True False 259062.68538038168 330198.42799069156 308862.4018509652 346059.94370494556 307700.67319009226 272634.8258377153 253603.6187402375 95921.03445309606 209875.69590619797 204519.56812527197 1.266688990961007 1.6145077511039874 1.510185087334926 1.6920627540782676 1.5045048061201653 1.3330500760236375 1.2399968426732675 0.4690066350733866 1.026188827944548 1.0 17.641879359103612 2.0248937903533535 3.1549642812239767 0.7820358055925903 1.5043616577367296 0.701124683622151 0.18844191418240472 0.118570023312583 2.3544571290235425 0.08529009412016694 0.05223666455333101 105.89947092031302 -2.0248937903533535 0.7223258521441392 SHHAASTTTAPTPAAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SHHAASTTTAPTPAAR 16 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ;; 111.83 0.00045463 79761000.0 20841.3 42876.5 40911.1 47049.4 45692.2 41385.5 40037.9 5720.8 31264.3 18477.2 False True 20729.09275648612 44303.6183831084 46671.027274344124 53005.84921591633 51510.830831112464 38524.61779598801 38101.113817369005 6147.715145633784 23559.63218515656 17297.969276873206 1.1983541203417565 2.561203438044073 2.6980639476994384 3.064281614072661 2.977854221303346 2.227117945428086 2.2026350727948683 0.3554009749487224 1.3619883240661657 1.0 14.078315059830699 1.8689176360301538 5.076874414845626 0.8798344143938679 2.49860449366528 0.6250867068354271 0.5381888724175127 0.14038940173909056 4.996850989615831 0.2523208258406232 0.1476693857868526 73.94650221813612 -1.8689176360301538 1.6187700792714121 SHHAPMS(ph)PGSSGGGGQPLAR ddPTM_BT-474_Trastuzumab_2h_R1 8 SHHAPMSPGSSGGGGQPLAR 20 0 O14497;O14497-2 O14497 ARID1A AT-rich interactive domain-containing protein 1A 1 S(0.128)HHAPMS(0.765)PGS(0.104)S(0.003)GGGGQPLAR;S(0.032)HHAPMS(0.823)PGS(0.144)S(0.001)GGGGQPLAR;S(0.029)HHAPMS(0.953)PGS(0.018)SGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.999)PGS(0.001)SGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR 201.61 8.0032e-22 3521680000.0 893855.0 1474862.0 1396555.0 1635785.0 1492286.0 1455526.0 1386516.0 360383.9 1114411.0 777793.0 True False 889042.5839966272 1523951.890097093 1593177.8049263319 1842875.2132791835 1682319.776627905 1354908.913559659 1319444.9240745206 387277.5766103643 839779.3413923404 728153.5848379101 1.2209547580467266 2.09289897327956 2.187969458779743 2.53088805940496 2.3103913949725263 1.8607460593100933 1.8120420630329441 0.5318624870830978 1.1532997418110338 1.0 19.47388325551263 1.8806736155036516 4.562386366921691 0.8740395880565502 2.06273741640385 0.6720401131488567 0.3561578617582476 0.12949239202630294 4.046734406539519 0.17243029628686746 0.09932407562969216 75.97550850564875 -1.8806736155036516 1.1886978283472995 SHHCTLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHHCTLAR 8 0 Q9HCN6-3 Q9HCN6-3 0 ; 88.734 0.033511 1194380000.0 849600.0 1067290.0 1068910.0 1086680.0 962560.0 1012670.0 999320.0 891930.0 1102710.0 1054010.0 False True 845025.8479994336 1102814.1024595716 1219403.2368677242 1224253.5765801908 1085136.3104598967 942666.5064687688 950979.0738268801 958490.3457287683 830961.8960569719 986742.1794166398 0.8563795747527599 1.1176314598323478 1.2357870802570061 1.2407025889011527 1.099716149867463 0.9553321284249463 0.963756383039283 0.9713685760300892 0.842126660226722 1.0 19.91231365428963 2.7638797905049075 4.376890034620923 0.9473339568680107 1.1267292805179645 0.3691749480488389 0.10626140658940351 0.22733330166675958 10.730419692041675 0.035196726194216016 0.036054519361410825 580.6036884785027 -2.7638797905049075 0.1793953236499538 SHHGEHERPEFIAYPHLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SHHGEHERPEFIAYPHLR 18 1 P12074;H0YIV9 P12074 COX6A1 Cytochrome c oxidase subunit 6A1, mitochondrial 0 ;;; 219.58 2.4374e-19 6904900000.0 840583.0 1285170.0 1190370.0 1421610.0 1692790.0 2254950.0 1120070.0 40961.0 898474.0 303329.0 False True 836057.39452555 1327946.106548328 1357963.7491184792 1601585.6802390444 1908356.7725475887 2099070.6140813394 1065887.935017084 44017.7178157435 677057.1216347831 283970.283526978 2.9441721300606516 4.6763558850416445 4.782062870284344 5.639976339590791 6.7202692790433805 7.391867163036873 3.7535192829985733 0.15500818349382564 2.3842534268923274 1.0 18.115380439197143 1.9515630956301055 5.203830850554377 1.2286509896883522 5.3972333150653515 0.6947016900801846 1.2380160809645882 0.11997561665905729 7.363968044356462 0.5833128282480636 0.3575008838583825 89.44644730265104 -1.9515630956301055 4.168582325376999 SHIEIIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SHIEIIR 7 0 P00390-5;P00390-4;P00390-2;P00390-3;P00390 P00390-5 GSR Glutathione reductase, mitochondrial 0 ;;; 158.08 0.0014337999999999998 794550000.0 1024170.0 1536840.0 1723300.0 1360340.0 825830.0 1074420.0 1468770.0 445466.0 2479630.0 979970.0 False True 1018655.9825159849 1587992.7903606007 1965925.6608078778 1532558.9045211964 930994.5554220998 1000147.8743126319 1397719.983853726 478708.9349505143 1868558.411839693 917427.475605473 1.110339519582956 1.7309191544678513 2.142867652301812 1.6704959740929453 1.0147881769157534 1.0901655999048492 1.52352095508288 0.5217948531948877 2.036736920928277 1.0 19.80723458910128 3.250390782511286 22.450640684693667 1.147316127306838 1.702690323803093 0.20701344156663182 0.43736450782072256 85.99870883032122 163199.827828057 0.11848367546907745 0.15879246987379672 1779.8802437234115 -3.250390782511286 0.5553741964962551 SHILEQHPHTLDLS(ph)PSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHILEQHPHTLDLSPSEK 18 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 SHILEQHPHTLDLS(1)PSEK;SHILEQHPHTLDLS(0.998)PS(0.002)EK 227.6 4.8107e-19 346000000.0 244980.0 233090.0 181040.0 214965.0 224543.0 280550.0 241800.0 51728.0 372420.0 114398.0 True False 243661.0548998365 240848.2597441193 206528.85837211073 242179.54695914217 253137.2200793676 261156.2388436634 230103.2102342988 55588.20602946168 280642.0811723275 107097.02169894466 2.2751431462284777 2.2488791557729435 1.928427654623993 2.2613098209203386 2.3636252069730714 2.4385014139588983 2.1485491060725384 0.5190453025456024 2.6204471116034123 1.0 16.708558834637888 1.945317016411646 16.8094366412335 1.3281910224185105 2.2473727434618977 0.3743671170048275 0.5084378471461831 8.457422257094047 2598.9281105328014 0.19643856478748795 0.1265776016699872 88.16922358176434 -1.945317016411646 0.9191817210433872 SHISDQS(ph)PLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHISDQSPLSSK 12 0 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin 1 SHISDQS(0.998)PLS(0.002)SK 159.6 7.3747e-05 103880000.0 90264.0 92536.0 95333.0 92569.0 86983.0 115670.0 117310.0 47522.0 128710.0 105560.0 True False 89778.02865327313 95616.0048208068 108755.05775070951 104288.22590868665 98059.76946136671 107674.00515789191 111635.26713228102 51068.33295182644 96991.14512563848 98823.07042553721 0.9084723664897714 0.9675473997021078 1.1005027194804275 1.0553024254317964 0.9922760853221451 1.0895634460075174 1.1296478307299482 0.516765293083119 0.9814625745586494 1.0 16.592560260460154 1.7677559807542038 24.999999999992106 0.7834771422198449 1.035966665246773 0.2854839229725049 0.1400885718187029 21.027729094737563 18016.222510903805 0.06155504715915037 0.03414070751235424 58.580892059289496 -1.7677559807542038 0.25248952302692806 SHKDEVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHKDEVVK 8 1 P46940;H0YLE8;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 ; 109.29 0.0021911 499960000.0 1325390.0 1217800.0 1145120.0 1022160.0 854950.0 1145610.0 1327650.0 561510.0 1890440.0 1039700.0 False True 1318254.2475046727 1258333.7368243537 1306342.9424385303 1151565.3511955745 963822.8148143375 1066416.6771758671 1263426.4973844774 603412.7274900058 1424566.3925981824 973345.4558680472 1.3543539342144764 1.2927925324335632 1.3421164444369957 1.1831003517333807 0.9902165865199245 1.0956199268684286 1.2980247555147115 0.6199368619354896 1.4635773804766246 1.0 19.892592405871124 3.5025321135710636 3.2421280714001255 1.0455286519249554 1.324823488663624 0.21764614859943443 0.20751064456768667 0.3362495811953139 7.227173580430502 0.05773242558607333 0.08877252500113997 3180.768879139532 -3.5025321135710636 0.27929483673866873 SHKEPPS(ph)PADVPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHKEPPSPADVPEK 14 1 F8VW41;Q86VP3-4;Q86VP3;Q86VP3-3;Q86VP3-2 F8VW41 PACS2 Phosphofurin acidic cluster sorting protein 2 1 S(0.005)HKEPPS(0.995)PADVPEK;S(0.016)HKEPPS(0.984)PADVPEK 116.82 0.00020503 423090000.0 1135660.0 840250.0 768610.0 752660.0 771060.0 1129340.0 999070.0 253720.0 1427460.0 641640.0 True False 1129545.7327436882 868217.213308148 876823.6071221163 847946.6788280309 869249.9205693218 1051271.3839804078 950741.1672819715 272653.87476405443 1075681.6099840254 600689.9858643588 1.8804137896827693 1.4453665513648153 1.459694064751915 1.411621133666618 1.4470857530919556 1.7501063921811313 1.5827484886632643 0.4539011489790711 1.7907433706193396 1.0 19.19626108725366 1.849981902519718 22.5008650139833 1.0199609864560855 1.5555918392419588 0.30341660499201417 0.33359703111779226 11.256848062921962 2255.2735158497344 0.13019991438989764 0.08401448354717747 70.79162841982821 -1.849981902519718 0.5356308527858733 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPS(ph)PPQEEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 SHLEPSGNPLPATPTTSAPSAPPAS(0.053)S(0.053)QGPDT(0.197)APRPS(0.698)PPQEEAR;SHLEPSGNPLPATPTTSAPSAPPAS(0.023)S(0.023)QGPDT(0.157)APRPS(0.797)PPQEEAR;SHLEPSGNPLPATPT(0.003)T(0.008)S(0.002)APS(0.016)APPAS(0.209)S(0.209)QGPDT(0.209)APRPS(0.344)PPQEEAR 232.7 2.4231999999999995e-46 3195900000.0 265581.0 310253.0 293689.0 337744.0 325350.0 318287.0 254114.0 96009.9 270227.0 234602.0 True False 264151.14140482305 320579.58355310105 335037.8584094504 380502.35577032744 366781.39399946743 296284.56885700667 241821.53501025029 103174.64626639376 203633.17670628513 219629.4995071229 1.202712486244391 1.4596380917523522 1.5254683872672787 1.7324738098671812 1.670000591098065 1.3490199154572027 1.1010430545665733 0.4697667958900378 0.927166783894078 1.0 17.74471231718779 2.133526971583843 2.7377230453416894 0.7472554874165396 1.519600761409486 0.7190942092691646 0.19389317728342037 0.12884901300474916 1.928827281324902 0.0886406574411364 0.0580283394961979 135.99626202794465 -2.133526971583843 0.7723452739929464 SHLEVPLEENVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHLEVPLEENVNR 13 0 Q96CT7;M0R2F5 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 0 ; 140.82 3.9547e-05 295320000.0 204608.0 246990.0 212868.0 207991.0 230150.0 275430.0 216160.0 84823.0 247190.0 186578.0 False True 203506.41326208593 255210.9128413922 242837.9641181757 234322.6392742023 259458.23829407486 256390.17239248025 205703.51498861046 91152.92298246658 186273.33667630015 174670.43230253764 1.165087934915069 1.461099680565023 1.3902637150262993 1.3415129062504645 1.485415905106828 1.4678510209924944 1.1776664904127678 0.521856628971899 1.0664274097270552 1.0 17.414275888182406 1.9664163714986005 6.624536953336919 0.8165462430937829 1.386770417529634 0.6782929346183164 0.16006962019710128 0.09894403008559934 13.934645629622773 0.0644447527007066 0.04105531148086936 92.55851356744988 -1.9664163714986005 0.5702241744358512 SHLGNVHDQDN ddPTM_BT-474_Trastuzumab_2h_R1 5 SHLGNVHDQDN 11 0 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 ;;;; 140.63 3.850800000000001e-05 569562000.0 834490.0 734193.0 581716.0 795433.0 1030952.0 886611.0 745406.0 459522.9 626235.0 600919.0 False True 829997.1985605544 758630.1701759595 663616.5564338866 896134.736242418 1162237.6262687515 825321.6684278004 709347.8640525553 493814.83220800554 471907.77536907967 562567.8349473602 1.4753726519722155 1.3485132335142214 1.1796205101132056 1.5929363190952248 2.0659510801528542 1.4670616006779453 1.260910809305209 0.8777871778862225 0.8388459951913823 1.0 19.101667542751525 1.9521674834448577 2.6014432072453006 0.8920430500858922 1.5249842081036915 0.6179859944980598 0.21670591971311845 0.2054346702897586 2.554968563402334 0.12879794536141229 0.0692052761731241 89.571012497902 -1.9521674834448577 0.6329411580177993 SHLLDCCPHDILAGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHLLDCCPHDILAGTR 16 0 Q9NQ29-3;Q9NQ29;Q9NQ29-2 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 0 110.12 0.00053149 168610000.0 150360.0 217770.0 207830.0 207300.0 193030.0 184150.0 177500.0 110060.0 178130.0 167540.0 False True 149550.47846656654 225018.3428052552 237090.65750925668 233544.15874505223 217611.2263215525 171420.14394247258 168913.64688415232 118273.23607335599 134232.24831971084 156847.45376178934 0.9534772473494851 1.4346317865446498 1.5116002958475563 1.4889891620411342 1.3874068153637202 1.0929099569752365 1.0769294804153366 0.7540653879723315 0.8558140097293186 1.0 17.259002583311943 2.3527136835049864 1.7089722056397327 0.8588302568872956 1.3750049280788672 0.6088148575727153 0.16497645693119692 0.22643687594698303 1.3419725986085147 0.0811287149956623 0.056537609130147465 225.2753553942537 -2.3527136835049864 0.5161746711915716 SHLLNCCPHDVLSGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHLLNCCPHDVLSGTR 16 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ; 196.66 2.6209e-11 3795800000.0 3425600.0 3079100.0 2763000.0 2711900.0 2758800.0 3685100.0 3466600.0 2133230.0 4786400.0 2597800.0 False True 3407156.9502199413 3181585.9821447465 3152006.3835734776 3055226.2619426255 3110116.827311292 3430357.7107923157 3298907.314301981 2292422.454922453 3606855.8544740607 2432006.179911522 1.4009655807469599 1.3082145960091658 1.2960519630292016 1.2562576062425042 1.2788276826765463 1.4105053429252035 1.3564551527669215 0.9426055220821242 1.4830784083802289 1.0 21.213715464107473 -4.9999999956191274 0.11928999338005028 0.048927556721005176 1.4278432132121035 0.2786637825190874 0.1401125401856091 196.4897541266546 1.5233318350898055 44.82906510710669 1.3811542198072932 1.0000000100873319e-05 4.9999999956191274 1.3789156564910983 SHLSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHLSEK 6 0 Q9H3M0 Q9H3M0 KCNF1 Potassium voltage-gated channel subfamily F member 1 0 81.381 0.062027 30636000.0 134040.0 157100.0 135100.0 150580.0 161390.0 130930.0 152540.0 129110.0 138420.0 151020.0 False True 133318.34353324393 162328.97853104456 154120.905689749 169643.41256068466 181942.0598665253 121879.11727606795 145161.05744061174 138744.84380729578 104308.24573297259 141381.77430527308 0.9429669714384932 1.1481605696965016 1.0901044809139928 1.1998959087497993 1.2868848248691094 0.8620567811866983 1.0267310489906456 0.9813488654323745 0.7377771728041062 1.0 17.10923662701602 2.7241073291048266 24.900034239265164 0.9342894606709767 1.13567774103812 0.47103692250338547 0.1119242229939217 725.9999761151819 1250746.6064210807 0.036364908639221045 0.03442882829609235 529.7943581234191 -2.7241073291048266 0.2013882803671433 SHLVGVKPFEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHLVGVKPFEADR 13 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 ; 127.36 0.00010688 1911170000.0 1884240.0 1899400.0 1749830.0 1672460.0 1812720.0 2027740.0 1991210.0 527850.0 2402900.0 1340990.0 False True 1874095.4611987465 1962620.380788451 1996190.8542049848 1884193.2645188118 2043559.1471667865 1887567.1065865294 1894887.565139113 567240.847367989 1810737.4922103721 1255406.8701207011 1.4928191853996795 1.5633341090444686 1.5900748209328033 1.5008626361409476 1.6278062481610511 1.5035500852445145 1.5093812294948878 0.4518382532934933 1.4423511096735344 1.0 20.25972357842069 1.8535762302385845 9.753586903678974 0.915006729452628 1.5460359000726775 0.5726444410550426 0.2271041434401785 0.22141907671928374 17.43850579224674 0.08820331264449857 0.055881216353170414 71.37994849317062 -1.8535762302385845 0.6310291706200496 SHMDDLNSENAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHMDDLNSENAK 12 0 Q14789;Q14789-2;Q14789-4;Q14789-3 Q14789 GOLGB1 Golgin subfamily B member 1 0 75.479 0.01829 0.0 80841.0 93957.0 98846.0 90466.0 89755.0 100500.0 98891.0 63312.0 144200.0 102150.0 False True 80405.7610382794 97084.30194679413 112762.657615166 101918.98632431196 101184.76723043538 93552.67155155308 94107.2645296942 68036.66293182185 108663.84218100434 95630.69954498517 0.8407944459347609 1.0152001648918734 1.1791470537358337 1.0657559424875769 1.058078291927976 0.978270283462116 0.9840696029356731 0.7114521095792785 1.136286178999332 1.0 16.545186208754476 2.265006031477217 2.7666058721751483 0.9074664662165218 1.0378524407518894 0.020154680916353085 0.12823784603518876 0.48901183874529647 7.702937501977159 0.05330746507706635 0.039235517207232916 184.0797566268758 -2.265006031477217 0.1303859745353676 SHMMDVQGSTQDSAIKDFVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHMMDVQGSTQDSAIKDFVLK 21 1 P13667 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 289.96 6.434999999999998e-55 1688620000.0 1027530.0 979790.0 853360.0 911370.0 867560.0 1226720.0 1273820.0 405300.0 1622350.0 906250.0 False True 1021997.8926493163 1012401.7178544381 973505.6704619112 1026749.3485551281 978038.6235690106 1141919.7337882696 1212200.460135047 435545.54407169885 1222543.5808762303 848412.3491203403 1.2046004442402976 1.1932897003492782 1.1474440128921644 1.2102008529457322 1.1527868784360231 1.3459489774898334 1.4287869116849765 0.5133653989398972 1.4409780599537485 1.0 19.69440609469827 SHMS(ph)GSPGPGGSNTAPSTPVIGGSDKPGMEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEK 32 1 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 S(0.117)HMS(0.451)GS(0.406)PGPGGS(0.026)NTAPSTPVIGGSDKPGMEEK 81.384 0.00040483 96899000.0 81285.0 84573.0 114130.0 85201.0 117500.0 194240.0 123560.0 23207.0 145360.0 92138.0 True False 80847.37059161259 87387.96117954186 130198.51196425657 95987.43786414471 132462.92852293645 180812.6459917777 117582.9307549626 24938.82418275822 109537.97572420807 86257.67395668947 0.9372774256839638 1.0131036135222 1.5094136671205634 1.1127988208022004 1.5356654364392777 2.096191998900468 1.3631590716670814 0.2891200636279639 1.2698925289732226 1.0 16.396365192116242 1.78161969003454 24.999999999684093 0.7792523988250366 1.3834619158847286 0.26504423693250556 0.3855667763862892 85.00719810381838 49372.28103390236 0.18363637637510222 0.10221857363026433 60.48110121697865 -1.78161969003454 0.604209517059692 SHNVAAGSYEAPLPPGS(ph)FHGDFAYGTYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 SHNVAAGS(0.096)Y(0.002)EAPLPPGS(0.901)FHGDFAYGTYR 117.94 0.00013429 318460000.0 52799.0 20038.0 19894.0 26444.0 22442.0 24659.0 19762.0 8021.0 36306.0 16914.0 True False 52514.7360505204 20704.9527167732 22694.902278252157 29791.807688635592 25299.85567584461 22954.38137104224 18806.036561828823 8619.567749812717 27358.872775475375 15834.534039196053 3.3164686703459614 1.307582064967693 1.4332535597242253 1.8814451764030673 1.5977644566754254 1.4496404702672057 1.1876596125454184 0.5443524721647159 1.727797780961064 1.0 13.9507867935381 4.738790093703495 24.23867569387567 1.3203811673250414 3.3164694065746243 0.7266353721101231 0.3619135576844608 6.94642448020327 733026.162248926 0.09707933490405614 0.565681992567567 54801.20318301552 -4.738790093703495 1.996088239249583 SHNVAAGSYEAPLPPGSFHGDFAYGT(ph)YR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 SHNVAAGS(0.05)Y(0.006)EAPLPPGS(0.329)FHGDFAY(0.007)GT(0.598)Y(0.01)R 108.9 0.001383 558280000.0 117610.0 46309.0 54615.0 70714.0 54466.0 67189.0 44303.0 17282.0 69868.0 46470.0 True False 116976.80082769955 47850.367070618355 62304.31727791003 79666.38514953028 61401.92225472558 62544.38257589352 42159.894636104764 18571.67059621784 52649.967583234495 43504.24481503138 2.6888594739445355 1.0999011079048848 1.432143404461142 1.8312324576199592 1.4114007153966337 1.4376616084663878 0.9690984136227985 0.4268932991522943 1.2102259861557954 1.0 15.40886855464461 2.3178353300652117 2.271883573397624 0.7887664118238741 1.6493897108463837 0.42242323677221794 0.43286612019116033 0.27430121978928285 2.9043420101802186 0.1802734509642436 0.1321259604705207 207.89082851898692 -2.3178353300652117 0.8606232990225097 SHPDLLQLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHPDLLQLPR 10 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 71.221 0.051633000000000005 131520000.0 19347.0 22596.0 23070.0 24925.0 22581.0 26771.0 28558.0 4251.1 31226.0 16442.0 False True 19242.837901653773 23348.09420042956 26318.055471965283 28080.502444382182 25456.556501927043 24920.383782155488 27176.540437845757 4568.3386686484055 23530.770706962852 15392.657483295588 1.250130974624523 1.5168332190700253 1.7097798414943066 1.824279041800007 1.6538116650456878 1.6189786467476182 1.7655522100285976 0.29678687215680954 1.528700988279568 1.0 13.909954708486229 1.762510431134723 24.999999999999925 0.8804567186605907 1.6285305795217369 0.48934725461040995 0.3154788081857333 9.639423761622245 10069.392435431706 0.13781337238709757 0.07642829533075306 57.877588955447095 -1.762510431134723 0.7480738608611461 SHPFIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHPFIK 6 0 O14579;M0QXB4;O14579-3;O14579-2 O14579 COPE Coatomer subunit epsilon 0 ; 106.84 0.03178 1344350000.0 3402000.0 3782500.0 3492000.0 3481900.0 3540400.0 3961100.0 3754200.0 3300400.0 4848500.0 3790600.0 False True 3383684.009997735 3908398.2259304645 3983643.246991887 3922708.1829927526 3991248.954405147 3687278.4804264354 3572595.003563292 3546692.6070916206 3653652.14157143 3548680.66270407 0.9535047899800009 1.1013665633560537 1.1225702241565965 1.1053990358218584 1.1247134734754756 1.0390561537923095 1.0067389385330037 0.9994397761305086 1.0295804240631143 1.0 21.758851324883494 2.50362571972709 4.777373956252692 1.0089107848329755 1.086266532195564 0.3497987680039619 0.04653204629525515 0.2119568140315892 12.365803820102801 0.015971484291225028 0.014331114145392444 318.87885337833245 -2.50362571972709 0.07735574736258855 SHPLDPIDTVDFER ddPTM_BT-474_Trastuzumab_2h_R1 6 SHPLDPIDTVDFER 14 0 P47897;A0A1B0GVU9;P47897-2;A0A0U1RQT0;C9J165;A0A0U1RQE9;A0A0U1RQL2;A0A0U1RRI9;A0A0U1RQM8;A0A0U1RQU2 P47897 QARS Glutamine--tRNA ligase 0 ;;;;; 230.36 9.426e-13 3386010000.0 1617052.0 1890290.0 1691040.0 1807935.0 1708400.0 1919870.0 1955040.0 1472547.0 2053650.0 1801610.0 False True 1608345.9717033654 1953207.1599455667 1929123.7332168273 2036819.3856282507 1925954.613519871 1787153.9057878598 1860467.2462219317 1582435.9345821543 1547555.475000138 1686629.7073640788 0.9535857009283574 1.1580533364363088 1.1437743120460782 1.2076268885429866 1.141895346151478 1.0596006331353451 1.1030679929914977 0.9382236822184509 0.9175431146761367 1.0 20.68571183993361 1.7671138685111445 4.321671222919571 0.9448887595893896 1.1173083199186356 0.5330937072582387 0.06729117637689955 0.14639260566679108 5.629829376909502 0.03494104013527456 0.018172708063118333 58.49434314913253 -1.7671138685111445 0.172419560329246 SHPPPPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHPPPPEK 8 0 A0A0U1RRE5 A0A0U1RRE5 0 93.551 0.010989 91905000.0 110500.0 114200.0 96217.0 98306.0 103640.0 116580.0 115090.0 95212.0 140440.0 116600.0 False True 109905.08027770415 118001.0779646423 109763.51726684377 110751.52952045867 116837.93967759269 108521.09899980144 109522.65701350475 102317.2029167395 105830.4437995857 109158.48817371762 1.0068395240395633 1.0810068913454751 1.0055426664774185 1.014593838494775 1.0703513911960176 0.9941608830922812 1.0033361477048637 0.9373270428032062 0.9695118132376881 1.0 16.736064793221743 2.2601563600684393 2.039657915574041 0.9647258489280285 1.034661147631056 0.45690592438230937 0.029497427769156617 0.2478372880069117 2.0937685061905493 0.013289407186110153 0.008945853227705223 182.03561277615393 -2.2601563600684393 0.06993529870302762 SHQGLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHQGLDR 7 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 94.806 0.032408 87149000.0 88279.0 103341.0 93271.0 97461.0 97845.0 92145.0 99143.0 35131.0 105204.0 85086.0 False True 87803.71567271887 106780.64271404632 106402.74607393485 109799.55260709861 110304.9807772487 85775.23303599861 94347.07432696069 37752.653611603346 79277.88386137577 79655.73863421039 1.1022898937128067 1.3405266782396816 1.3357825550090023 1.3784261434234208 1.3847713004556226 1.0768242753970274 1.1844353708175985 0.473947693649148 0.9952564023720906 1.0 16.281490681047483 1.9089336529441692 7.012785998474629 0.7750260614763067 1.2737375091692735 0.5770691863746604 0.1702370795400519 0.15880366260911322 10.525374741648434 0.07210676565283695 0.04463651518396474 81.08371770053509 -1.9089336529441692 0.4987114476929668 SHRPQQNVGVQGAATR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHRPQQNVGVQGAATR 16 1 O75362 O75362 ZNF217 Zinc finger protein 217 0 ; 136.01 1.186e-05 67816000.0 71243.0 74182.0 64382.0 69698.0 67003.0 75028.0 65800.0 19250.2 71894.0 52570.0 False True 70859.43560384143 76651.10302603399 73446.42598162417 78521.75965370312 75535.43489210482 69841.49095691463 62617.00261958991 20686.74767453494 54176.68703024361 49214.93759255862 1.4397952952917183 1.5574763837072052 1.4923604412480123 1.5954863196976956 1.5348070847401807 1.4191116431990514 1.2723170176092575 0.42033473344610744 1.1008179565066687 1.0 15.58680864470576 1.952619289221822 5.662951306653592 0.7859908840432224 1.5022901372140374 0.7428240586172459 0.17427103222279658 0.08880117993037609 6.8004952176691456 0.07324853019120268 0.045319064791165535 89.66424361206191 -1.952619289221822 0.716299253170815 SHS(ph)GT(ph)SPDNTAPPPPPPRPQPSHSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 2 S(0.472)HS(0.542)GT(0.562)S(0.424)PDNTAPPPPPPRPQPSHSR;S(0.467)HS(0.544)GT(0.572)S(0.418)PDNTAPPPPPPRPQPSHSR;S(0.266)HS(0.735)GT(0.569)S(0.429)PDNTAPPPPPPRPQPSHSR 123.24 0.0025054 1151080000.0 75335.0 88879.0 46721.6 73756.2 60225.7 84250.0 73948.0 17956.8 80863.0 45732.0 True False 74929.40473050535 91837.28378650987 53299.595168572785 83093.72735760635 67895.085909309 78425.99580316758 70370.85273120721 19296.82759878281 60935.39715868628 42813.344606864965 1.7501413500521212 2.1450621209300262 1.2449294877099228 1.940837094616583 1.5858393342720125 1.831811939088549 1.6436663236051756 0.4507199280032103 1.4232804682331572 1.0 15.385772923779847 1.8705992697348977 7.359929085789003 0.9188601664760202 1.7443083510666686 0.5687961195317449 0.3103048643044079 0.16450853748861916 9.05126821622606 0.12460746096323086 0.07720142084946822 74.23338588030113 -1.8705992697348977 0.8254481845906484 SHS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.055)HS(0.315)GT(0.315)S(0.315)PDNTAPPPPPPRPQPSHSR;S(0.018)HS(0.367)GT(0.307)S(0.307)PDNTAPPPPPPRPQPSHSR;S(0.019)HS(0.366)GT(0.308)S(0.308)PDNTAPPPPPPRPQPSHSR;S(0.066)HS(0.38)GT(0.277)S(0.277)PDNTAPPPPPPRPQPSHSR 121.26 0.00011138 6671000000.0 155625.0 177283.0 152836.0 166808.0 153744.0 167422.0 166312.0 34937.3 143907.0 109848.0 True False 154787.13229156315 183183.7574851634 174353.98032567344 187925.87569679067 173322.387087918 155848.51120899623 158266.85318646283 37544.4987340147 108443.04810500551 102837.40659439558 1.5051637085916043 1.7812949932475886 1.6954334623912557 1.8274077684397014 1.6854021588810049 1.5154846506746666 1.539000821079516 0.3650860127394616 1.0545097518135529 1.0 16.65000560756834 1.8636248957284218 6.202561965477043 0.7627951241116413 1.669254706728495 0.7928127036678521 0.1979282040612882 0.08932673920334255 4.0653725889535615 0.08403099857011206 0.050833766023536724 73.05078643424534 -1.8636248957284218 0.9064595826168538 SHS(ph)LPSSIIF ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSLPSSIIF 10 0 Q86Z20-2;Q86Z20 Q86Z20-2 CCDC125 Coiled-coil domain-containing protein 125 1 S(0.112)HS(0.888)LPSSIIF 98.044 0.005921899999999999 47059000.0 117090.0 130810.0 127220.0 128680.0 101100.0 120760.0 124890.0 48261.0 133690.0 94111.0 True False 116459.60044992194 135163.9317736851 145131.47018393673 144970.87480614235 113974.48573335206 112412.14543846303 118848.59357386908 51862.48088439239 100743.89085421964 88104.75540751917 1.3218310397804347 1.5341275411128346 1.6472603494856386 1.645437571849499 1.2936246767404915 1.2758919188699023 1.3489464107146947 0.5886456485181532 1.143455769081243 1.0 16.42693226949756 2.1973519502075267 1.4768217097895306 0.8829240118101847 1.508901235840374 0.5954853419420655 0.19235912689585144 0.2508108677201172 1.0635748056323011 0.11482200344900095 0.06551934262045932 157.52589297727798 -2.1973519502075267 0.6259772240301893 SHS(ph)PSASQSGSQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SHSPSASQSGSQLR 14 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 SHS(0.951)PS(0.049)ASQSGSQLR;SHS(0.962)PS(0.036)AS(0.002)QSGSQLR;S(0.007)HS(0.993)PSASQSGSQLR 306.65 1.2217e-44 693110000.0 430870.0 475050.0 484860.0 544400.0 473950.0 543480.0 532800.0 234075.0 492940.0 422840.0 True False 428550.243794157 490861.7520762104 553124.0735213307 613320.9841814112 534304.7231782618 505910.506814309 507026.42850634607 251542.86510876613 371461.5420575894 395853.98918846337 1.0825967541030064 1.2400070871649458 1.397293165228132 1.5493616356848516 1.3497520241582888 1.2780230100787198 1.2808420335634265 0.6354435523675076 0.9383801911889768 1.0 18.594608864544934 1.7568561579093382 24.99999999999999 0.8314937330914253 1.3210796001893874 0.6775567511395006 0.14279978710645483 3.985862462862198 5452.0091842495685 0.06760978642124525 0.03749357935577417 57.12893893439014 -1.7568561579093382 0.48958586709796215 SHSAHFFEFLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSAHFFEFLTK 12 0 P30046;J3KQ18;B5MC82;P30046-2;A6NHG4 P30046 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein 0 ; 72.887 0.023527 521100000.0 570510.0 1133460.0 1215520.0 1464210.0 1394090.0 1045750.0 984780.0 314700.0 845260.0 741380.0 False True 567438.4375496196 1171186.5309089618 1386654.6505107624 1649578.8358711668 1571619.098081194 973459.7639307113 937142.4291750737 338184.5120142202 636956.9989037161 694064.4936726482 0.8175586602147219 1.6874318475962058 1.9978757927426418 2.376693882066213 2.264370404204022 1.4025494356866473 1.350223844784476 0.4872522872114001 0.9177201898533272 1.0 19.404710201186496 2.15298224889763 2.15197432091458 0.7693412027920025 1.846081886449903 0.49199873112587267 0.4335126228504222 0.25498327469119453 2.3392607942196024 0.22734977564171155 0.1401461713597448 142.22706528637417 -2.15298224889763 1.0767406836579005 SHSDASVGSHSSTESEHGSS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSDASVGSHSSTESEHGSSSPR 23 0 Q6XZF7;A0A1C7CYY6;A0A1B0GTX1;Q6XZF7-2 Q6XZF7 DNMBP Dynamin-binding protein 1 SHSDASVGSHSS(0.001)TES(0.002)EHGS(0.161)S(0.719)S(0.118)PR 242.56 4.0095e-37 224970000.0 20367.0 80638.0 83244.0 116770.0 120330.0 121460.0 96826.0 12280.0 54658.0 44579.0 True False 20257.346334986425 83321.98708329973 94964.03163018107 131553.07002730202 135653.31224821243 113063.75608608584 92142.15646876018 13196.395956576509 41188.26827967643 41733.93005399792 0.48539273221515983 1.9965046899607255 2.2754634300510586 3.1521850412144405 3.2504322519517292 2.7091566967164846 2.207847579883826 0.3162030496409564 0.9869252243051281 1.0 15.348933164096147 1.7928255847804746 6.866149259547037 0.7352886669033497 2.3753370277903354 0.4679960095840964 0.7440535226072231 0.19418171928773725 18.59083817131161 0.36316933777828886 0.21036574110580486 62.06197396348701 -1.7928255847804746 1.6400483608869858 SHSDNDRPNCS(ph)WNTQYSSAYYTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.212)HS(0.212)DNDRPNCS(0.576)WNTQYSSAYYTSR 159.78 1.2914e-11 1447400000.0 167090.0 147790.0 134540.0 153130.0 154350.0 146220.0 140420.0 56654.0 163690.0 120920.0 True False 166190.40600544412 152709.10080905823 153482.06255735634 172516.24229922734 174005.55759587433 136112.1555648565 133627.3481435081 60881.809163182814 123350.79283362436 113202.78207517971 1.4680770468615738 1.3489871716018584 1.3558152877852996 1.5239576195632423 1.5371137917822069 1.2023746507790094 1.1804245946425957 0.537811951677568 1.0896445349877109 1.0 16.788549888761594 2.1632872060478605 2.2997234940323166 0.8348716567786221 1.4292102510006592 0.6705065111735333 0.1645764460509334 0.15327112091693906 1.6202162679541545 0.07623831412782792 0.04855972258130143 145.64219178246225 -2.1632872060478605 0.5943385942220372 SHSESASPSALSSS(ph)PNNLS(ph)PTGWSQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 2 SHSESASPSALS(0.002)S(0.022)S(0.976)PNNLS(0.996)PT(0.004)GWSQPK;SHSESASPSALS(0.012)S(0.109)S(0.879)PNNLS(0.994)PT(0.006)GWSQPK 248.39 5.5427e-46 746200000.0 412220.0 401010.0 391540.0 408080.0 414350.0 542060.0 536520.0 244570.0 571430.0 470000.0 True False 410000.65332194744 414357.37543433585 446665.42867331096 459742.8861586152 467115.0164551386 504588.6680719887 510566.4778945657 262821.05530129606 430608.7332697044 440004.19761275547 0.9318107771389628 0.9417123238424393 1.0151390170746006 1.044860227818171 1.0616149095610292 1.146781487107706 1.1603672889137107 0.5973148818289297 0.9786468756570365 1.0 18.74715776147361 1.7565342734442422 24.99999999999983 0.8204107563011226 1.0429606615513562 0.3016928153492189 0.12464229783217558 7.1300222484535425 9927.586532039893 0.05700863869408082 0.031614499197845355 57.08661257341652 -1.7565342734442422 0.22254990525023366 SHSESASPSALSSS(ph)PNNLSPTGWSQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 SHSESASPSALSS(0.004)S(0.996)PNNLSPTGWSQPK;SHSESASPSALS(0.001)S(0.033)S(0.966)PNNLSPTGWSQPK 279.93 3.0737999999999996e-61 1024580000.0 274460.0 261060.0 254690.0 257180.0 277730.0 376780.0 363090.0 180416.0 449070.0 360480.0 True False 272982.3378553724 269749.2242858972 290548.13819483476 289738.9616307408 313097.26926532027 350734.0854447181 345525.9495615031 193879.5580538851 338402.71572970675 337473.8577775453 0.8088992126771367 0.7993188748377348 0.8609500602750604 0.8585523143595015 0.9277674760564906 1.03929260700221 1.0238598978806397 0.5745024498510515 1.0027523849055406 1.0 18.364416223369314 6.390658710597454 12.97774717850996 0.8722529781398982 0.7867266158650076 0.0 0.1362431929390775 0.0 0.0 0.031181953229248698 0.0 2458434.888965101 -6.390658710597454 -0.08552636227489063 SHSGTS(ph)PDNTAPPPPPPRPQPS(ph)HSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 2 S(0.175)HS(0.21)GT(0.278)S(0.337)PDNT(0.002)APPPPPPRPQPS(0.546)HS(0.452)R 63.848 0.069125 247960000.0 66878.0 54527.0 47091.0 52074.0 56511.0 70656.0 51543.0 23583.0 65756.0 47622.0 True False 66517.93627884431 56341.898232732434 53721.00347769041 58666.56306073251 63707.340883061 65771.71702633366 49049.66817661892 25342.88321204753 49551.314885257474 44582.72318875456 1.4920115130074119 1.2637608069429007 1.2049735779989517 1.315903535375121 1.428969258188571 1.4752736558480073 1.1001945298171265 0.5684462814160254 1.111446572598692 1.0 15.444197121111726 2.0009302690803863 6.7143206123428145 0.8414480930671352 1.3485563454970968 0.6439919315133509 0.15644752963978772 0.0747855363561326 17.95237590211517 0.061366140616059696 0.04230420156249971 100.21443194886793 -2.0009302690803863 0.5071082524299616 SHSGTS(ph)PDNTAPPPPPPRPQPSHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.241)HS(0.241)GT(0.241)S(0.277)PDNTAPPPPPPRPQPSHSR 74.579 0.019595 329250000.0 30081.0 32131.0 31828.0 38635.0 33646.0 34951.0 38136.0 16201.0 39137.0 27082.0 True False 29919.047238313295 33200.46091140033 36309.10574606466 43526.18703866419 37930.618664533795 32534.91963580427 36291.21598633258 17410.000887011083 29492.21075893185 25353.603573933284 1.1800707994454036 1.3094967275395366 1.4321082855217877 1.7167653076115232 1.4960642006539566 1.28324636539061 1.431402675383177 0.6866874302992877 1.1632354616940364 1.0 14.629903195368277 1.7561265139473714 24.999999999999996 0.9295416567046401 1.4148135693855954 0.5926115248664537 0.17332395768645387 4.475481745724435 6376.340546819579 0.08173533728415043 0.04532697027078244 57.03303905331553 -1.7561265139473714 0.4852719126809554 SHSPSASQSGSQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSPSASQSGSQLR 14 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 0 ; 111.12 0.00067027 14601000.0 14418.9 15568.9 18191.6 18529.7 17438.2 16308.0 20813.7 13509.4 16041.599999999999 18283.2 False True 14341.270244490386 16087.101424901202 20752.819155778223 20875.558120107045 19658.851405690806 15180.666344902742 19806.86181494469 14517.540027343211 12088.362626427193 17116.350522964964 0.8378696279471924 0.9398674912223361 1.212455840275894 1.2196267009195894 1.1485422303846007 0.8869102280030361 1.1571895415655267 0.8481679554216341 0.7062464986451562 1.0 14.063087508643656 1.6404922290981805 6.266873537530021 0.8283599005427624 1.0615507733392422 0.29985209298516924 0.14298272882279853 0.1545933612354673 12.620663170044645 0.07730737156835342 0.03803363649763571 43.70108594942495 -1.6404922290981805 0.23319087279647976 SHSS(ph)SPQSVLWNRPQPSEDRLPSQQGLAEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEAR 31 2 Q8NCE2;Q8NCE2-2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 S(0.006)HS(0.024)S(0.473)S(0.473)PQS(0.024)VLWNRPQPSEDRLPSQQGLAEAR;S(0.004)HS(0.112)S(0.406)S(0.156)PQS(0.322)VLWNRPQPSEDRLPSQQGLAEAR 96.133 0.00019052 692880000.0 93603.0 144021.0 159676.0 167313.0 188583.0 195777.0 166472.0 83275.0 138472.0 151112.0 True False 93099.05184827086 148814.6519224671 182156.99287132765 188494.8086450116 212597.9272309866 182243.39679948633 158419.11337520316 89489.40336188192 104347.43102973682 141467.90278650782 0.6580931081502536 1.0519322686719008 1.287620649513866 1.332421029309193 1.5027997379152682 1.2882314165250168 1.1198237215283864 0.6325774369959541 0.7376049900676743 1.0 17.110115236020455 1.8595794477716014 5.238089964980322 0.7619355143677673 1.2055587960073162 0.37701933621274497 0.22733436748733626 0.22451522658188977 8.342531732833487 0.11055750925261035 0.06485222641176049 72.37347867784399 -1.8595794477716014 0.4436232816395489 SHSSS(ph)PQSVLWNRPQPSEDRLPSQQGLAEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEAR 31 2 Q8NCE2;Q8NCE2-2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 SHS(0.006)S(0.035)S(0.858)PQS(0.101)VLWNRPQPSEDRLPSQQGLAEAR 155.9 1.6087e-09 376410000.0 37897.0 80390.0 65401.0 80181.0 76042.0 83386.0 89027.0 34633.0 54428.0 60661.0 True False 37692.966762752505 83065.73255321886 74608.8923243174 90331.90637885679 85725.49796375437 77621.72208953025 84720.42389383337 37217.490322810576 41014.94869783432 56789.56304550504 0.663730529719861 1.4626936376787918 1.3137782423952422 1.5906427437463204 1.5095290994766624 1.3668307683109404 1.4918308814235381 0.6553579271773669 0.7222268758252173 1.0 15.793338190863057 1.732564403197155 8.447267762325444 0.7742670456394015 1.3629970363505726 0.4880382696212423 0.2570739468142366 0.08368195240998437 19.786049208875866 0.1213049522023492 0.0648072662899849 54.021221897029776 -1.732564403197155 0.588729990711171 SHT(ph)SEGAHLDITPNSGAAGNSAGPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 S(0.001)HT(0.981)S(0.018)EGAHLDITPNSGAAGNSAGPK;SHT(0.983)S(0.017)EGAHLDITPNSGAAGNSAGPK;S(0.004)HT(0.969)S(0.027)EGAHLDITPNSGAAGNSAGPK;S(0.399)HT(0.543)S(0.058)EGAHLDITPNSGAAGNSAGPK 348.83 2.5712999999999992e-102 14166000000.0 4538810.0 4668570.0 4484610.0 4669270.0 4376330.0 10325040.0 8442750.0 539144.0 7622730.0 3643850.0 True False 4514373.5512692025 4823960.530239845 5116004.107071097 5260399.103248968 4933629.684959854 9611294.287329825 8034341.928062965 579377.6629977596 5744210.33084888 3411296.373343065 1.3233601121690648 1.4141135809646381 1.499724312155681 1.5420527938748942 1.4462624014473726 2.8174902545658242 2.355216624051144 0.1698409049196656 1.683879001465816 1.0 21.701888671029476 1.74425599237192 24.99999999999761 0.8993338908564187 1.7659386861542525 0.3079828070233548 0.5615745000480084 1.3539435250648688 5964.813522105784 0.2703275492676088 0.1499103100206928 55.49527302481591 -1.74425599237192 0.8666047952978339 SHTDQLVLIFAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHTDQLVLIFAGK 13 0 Q9UMX0;Q9UMX0-2;Q9UMX0-4 Q9UMX0 UBQLN1 Ubiquilin-1 0 97.551 0.003726300000000001 168180000.0 528130.0 516960.0 462550.0 416490.0 422540.0 529280.0 502140.0 223110.0 641830.0 458810.0 False True 525286.6067607591 534166.7010910806 527673.0194433263 469217.591296318 476347.96440920536 492692.11939110426 477849.56983891956 239759.60112962412 483659.5965813735 429528.35299299646 1.2229381438978582 1.2436122024750023 1.228494034832504 1.092401905547708 1.1090023768861013 1.1470537764456674 1.1124983170708431 0.5581927233882357 1.1260248437878084 1.0 18.712393840660408 1.9695106151013773 22.169394152403157 0.8430731125936165 1.169315494625969 0.41703365776778667 0.1441495791625616 128.3487214854671 93323.91666892363 0.057188695151814295 0.03698851847208846 93.22032551374964 -1.9695106151013773 0.32624238203235245 SHTEEDCTEELFDFLHAR ddPTM_BT-474_Trastuzumab_2h_R1 5 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH Cytochrome b-c1 complex subunit 6, mitochondrial 0 ;;;; 390.34 7.2368999999999965e-127 1191440000.0 181730.0 221684.0 218747.0 194638.0 265620.0 439516.0 200848.0 36929.200000000004 269654.0 133961.0 False True 180751.58587210134 229062.61792919235 249544.67621699136 219279.15084331617 299445.132546914 409133.2934293768 191132.21492613087 39685.04442667797 203201.38487847813 125411.49429021768 1.4412680982320476 1.8264882276190184 1.9898070557991612 1.7484772993444855 2.3877008582160815 3.262326916244151 1.5240406472139414 0.3164386538194168 1.6202772004952355 1.0 16.93631005539611 1.9991924429466252 24.9995276367688 0.9072753200536264 2.1127936275638763 0.46701382452868323 0.5425705192533475 24.099535213684078 746062.1745643909 0.21128695609791803 0.1541608163160784 99.81422589082678 -1.9991924429466252 1.2055183075102498 SHTGDRPYQCEHAGCGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHTGDRPYQCEHAGCGK 17 1 E7EN86;P52747-2;P52747-3;P52747 E7EN86 ZNF143 Zinc finger protein 143 0 ; 85.493 0.0032405000000000003 175609000.0 145837.0 137495.0 138397.0 150890.0 141306.0 166272.0 168180.0 34822.0 188264.0 111710.0 False True 145051.82979601386 142071.4379575173 157882.09463171122 169992.65852889992 159300.4815137196 154778.0080021872 160044.49089000974 37420.594462533154 141868.85980835385 104580.57216025717 1.3869863857097602 1.3584878627342933 1.509669447875805 1.6254707257520697 1.5232320709587506 1.4799881546355331 1.5303462926628548 0.3578159278493006 1.356550809369802 1.0 16.67425534273963 1.7681507082425942 24.99999999998445 0.8445155025154898 1.4899769152972646 0.5509647545410694 0.23931367136115456 14.3188727511729 12104.412598713072 0.10335446863427102 0.05732519778075624 58.634160062762405 -1.7681507082425942 0.6454614127817748 SHTGEKPYGCNECGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHTGEKPYGCNECGK 15 1 Q15072;Q3ZCT1 Q15072 ZNF146;ZNF260 Zinc finger protein OZF;Zinc finger protein 260 0 121.79 6.7828e-05 89191000.0 106460.0 94268.0 97947.0 86656.0 79586.0 132620.0 116670.0 50277.0 167810.0 105540.0 False True 105886.83118881799 97405.65339379064 111737.08622941416 97626.64071496026 89720.80535682067 123452.29155390007 111026.2263773185 54028.92504143298 126455.47403879577 98804.34684266012 1.0716819104875648 0.9858438065372082 1.1308924131379425 0.9880804219112416 0.908065365784924 1.2494621491753828 1.1236977919010078 0.5468274096024413 1.2798573957496868 1.0 16.592286893327003 SHTLEFQSLEDLIMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SHTLEFQSLEDLIMEK 16 0 Q96KN1 Q96KN1 FAM84B Protein FAM84B 0 ; 122.31 9.4032e-05 190961000.0 180877.0 175071.0 158890.0 161038.0 175147.0 208625.0 187161.0 75183.0 239931.0 155222.0 False True 179903.17832932377 180898.1324023456 181260.33090336205 181425.39428840167 197450.9322723977 194203.2448004253 178107.30740554832 80793.53723153842 180803.2199606837 145315.59906775996 1.2380169746637852 1.2448638244129158 1.2473563200798645 1.248492215923797 1.3587731361195936 1.3364239355326835 1.2256585566047713 0.5559866783046793 1.2442106774536712 1.0 17.14883005345547 1.940244211092425 13.538724356386087 0.8856291647558961 1.278474032937114 0.4707078662218769 0.16271615734689404 1.5697914432882007 354.7610651225351 0.06357524422569791 0.04083928851678329 87.14534851584055 -1.940244211092425 0.3928448681812179 SHTPS(ph)PTSPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SHTPSPTSPK 10 0 P40123;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;B7Z385 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 1 SHT(0.001)PS(0.979)PT(0.02)SPK;SHT(0.001)PS(0.998)PTSPK;SHTPS(0.998)PT(0.002)SPK;SHT(0.006)PS(0.986)PT(0.008)SPK 184.58 1.6193e-06 292613000.0 821960.0 763540.0 678384.0 679159.0 748080.0 855640.0 786106.0 402145.0 1219310.0 716129.0 True False 817534.6586883409 788953.9673303232 773894.5705805673 765140.4597642586 843343.5537824533 796491.6207599085 748079.0495634557 432155.1019509329 918827.3884169244 670425.0341111177 1.2194274036503847 1.1767966993898982 1.1543342375432544 1.1412766839453112 1.2579237213309007 1.1880397960018543 1.1158280366951028 0.6445986948024774 1.3705147356783158 1.0 19.354716495660302 1.9840618348652523 24.634811403825655 0.9442149125308875 1.185316479821223 0.16732799552160316 0.1685313519309468 702.698290472234 1086124.3543316503 0.06494317921299822 0.043287916067398235 96.39662634077733 -1.9840618348652523 0.2411015672903355 SHTPSPTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 SHTPSPTSPK 10 0 P40123;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;B7Z385 P40123 CAP2 Adenylyl cyclase-associated protein 2;Adenylyl cyclase-associated protein 1 SHTPSPT(0.017)S(0.983)PK;SHTPSPT(0.065)S(0.935)PK;SHTPSPT(0.017)S(0.983)PK;SHTPS(0.004)PT(0.082)S(0.914)PK 128.46 0.00021190000000000005 3695930000.0 5905720.0 4774490.0 4141710.0 4224510.0 4466550.0 5441460.0 4921970.0 2041510.0 8041630.0 3977700.0 True False 5873924.259707172 4933406.013409853 4724826.767611325 4759332.532851229 5035338.667184015 5065304.678019041 4683875.507348686 2193857.8427777276 6059878.038821295 3723839.7805196936 1.57738372376682 1.3248169374036156 1.2688050630771055 1.2780712418800746 1.3521899340366599 1.3602370071120875 1.2578080109276377 0.5891386235934017 1.627319754872909 1.0 21.828359571108574 1.981289452277312 24.586446936701936 1.0007444482933856 1.3469350382839524 0.19279757957280141 0.25033245949308663 752.6451686948359 989006.4535798717 0.09709919048606144 0.06390632987064901 95.78322427779041 -1.981289452277312 0.34619058999056684 SHVAGQMLHGGGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SHVAGQMLHGGGSR 14 0 P43155-2;P43155 P43155-2 CRAT Carnitine O-acetyltransferase 0 ;;;; 136.39 1.5803e-05 1431816000.0 753413.0 1001302.0 966171.0 1062096.0 1027477.0 1339066.0 937794.0 58823.1 891700.0 447196.0 False True 749356.7081200534 1034629.7317701584 1102199.478691122 1196557.2447008428 1158320.1056166901 1246499.519242307 892429.3214990238 63212.77841964944 671952.4831678338 418655.5684162419 1.7899121966891336 2.4713148703219767 2.63271185633742 2.858094660552046 2.766761493221196 2.9773866951245083 2.1316552049577413 0.15098993824155016 1.6050245926736493 1.0 18.6754042885577 1.9213567353480465 5.809890879934339 0.873940108092406 2.5982007266792686 0.7353503293274182 0.44621876882728234 0.10596632553004896 5.99270721874703 0.19344439193474358 0.11759626996015822 83.43662629226 -1.9213567353480465 1.7242606185868627 SHVEDGDIAGAPAS(ph)SPEAPPAEQDPVQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 SHVEDGDIAGAPAS(0.5)S(0.5)PEAPPAEQDPVQLK 122.11 1.7656e-05 448490000.0 301720.0 224640.0 236750.0 235770.0 213230.0 296430.0 281430.0 135870.0 319080.0 247410.0 True False 300095.5730442431 232117.0066022523 270082.34213211015 265618.4578259571 240383.5765867725 275938.49182116287 267816.15573299734 146009.30933388037 240447.0094529468 231620.081981642 1.2956371074423003 1.0021454297760317 1.1660575362093026 1.1467850954608063 1.0378356424458268 1.1913409643082395 1.156273469215956 0.6303827720147899 1.0381095084492908 1.0 17.82140081808915 1.7697290834169004 24.999999999999993 0.8529267652912739 1.135861305983382 0.44351429349122096 0.1276683607545389 19.89468660940231 15965.690450096165 0.054578808303157644 0.030274519507594543 58.847644423324844 -1.7697290834169004 0.2829345406921081 SHVEDGDIAGAPASS(ph)PEAPPAEQDPVQLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 SHVEDGDIAGAPAS(0.122)S(0.878)PEAPPAEQDPVQLK;SHVEDGDIAGAPAS(0.167)S(0.833)PEAPPAEQDPVQLK;SHVEDGDIAGAPAS(0.203)S(0.797)PEAPPAEQDPVQLK 186.76 4.1312e-18 1861010000.0 1083040.0 991830.0 931700.0 858180.0 888390.0 1177520.0 1134370.0 521830.0 1189390.0 952420.0 True False 1077209.0329770567 1024842.4619761036 1062875.2615184258 966825.5000088229 1001521.2005999287 1096120.8139839282 1079496.1893857804 560771.6043990484 896280.7715094656 891635.7401922133 1.208126799341667 1.1493958976511802 1.192050984059138 1.0843278891000945 1.1232403048177801 1.2293370090207838 1.2106919235349058 0.6289245474594375 1.0052095616044405 1.0 19.766094920963422 1.7594454771648296 24.999999999999993 0.8451152547626473 1.1680719941302826 0.6092629516680987 0.10652648688384042 5.454115896463616 6534.401606186046 0.0460533919316975 0.02553960864200501 57.47056637745 -1.7594454771648296 0.32295673936763536 SHVSSEPYEPIS(ph)PPQVPVVHEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SHVSSEPYEPISPPQVPVVHEK 22 0 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK 198.99 3.043e-22 3175860000.0 962160.0 1333930.0 1388460.0 1496960.0 1437980.0 1678720.0 1615440.0 549080.0 1517250.0 1287650.0 True False 956979.8374660263 1378329.0536722862 1583943.0992893334 1686474.9825132333 1621098.2294247858 1562674.037681821 1537294.9956199154 590055.1377717456 1143344.0676083846 1205471.0745873724 0.7938637912100848 1.1433945473507794 1.3139619296394236 1.3990173784057875 1.344784013154095 1.2963181536452193 1.275264938352938 0.4894809591127841 0.948462465596486 1.0 20.201165603051827 1.7583869017646174 24.99999999999512 0.7685668493207873 1.2383576957446056 0.45409491119153045 0.20444588792519178 6.905942800403808 8716.048483113684 0.09497370817859586 0.052668848097147114 57.330654758139985 -1.7583869017646174 0.4697908464238183 SHYEEGPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SHYEEGPGK 9 0 D6R9Z7;P15954 D6R9Z7 COX7C Cytochrome c oxidase subunit 7C, mitochondrial 0 93.649 0.0067705 0.0 434590.0 643080.0 769230.0 600330.0 626580.0 943030.0 569730.0 263780.0 475060.0 540280.0 False True 432250.215727488 664484.5290499309 877530.897732981 676331.7164467787 706371.2489693755 877840.55575384 542169.9833200458 283464.60304769955 357987.8284778635 505798.867843021 0.8545891325752049 1.3137327330992747 1.7349404151005934 1.337155457328315 1.396545729692309 1.7355526308261435 1.0719082579843038 0.5604294929653247 0.7077671605009762 1.0 18.94820428217919 1.994185411873794 6.0802793809727 0.7299457302076225 1.405942768635832 0.5642537434529082 0.2524141394131297 0.10434969462528214 16.048873732251987 0.10363106110457986 0.06958012863415848 98.6700644490661 -1.994185411873794 0.6759970384282094 SIAAELDELADDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIAAELDELADDR 13 0 H3BU86;O14662;H0YEW0 H3BU86 STX16-NPEPL1;STX16 Syntaxin-16 0 134.13 1.2954000000000003e-05 0.0 16132.0 18619.0 17912.0 14080.0 16924.0 21748.0 19116.0 17445.0 19554.0 18787.0 False True 16045.147104433694 19238.722159576817 20433.853906105007 15862.52655634508 19079.17108359299 20244.611949285318 18191.286049788487 18746.83448391509 14735.178710175875 17587.99757564008 0.9122782190200388 1.0938551746347203 1.1618067274700177 0.901894970597174 1.0847835861666384 1.1510470059038858 1.0343011460829388 1.0658879388225544 0.8377974039855766 1.0 14.102303618349088 1.258471236558845 24.905438387447866 0.9188986927893775 1.0550386314445674 0.2556236926459743 0.08974666978089242 248.4513232367081 310780.0793295006 0.05739731538113906 0.020897537314912402 18.133065761081 -1.258471236558845 0.13613993865518992 SIAVLELICDVHNPGQDLVIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIAVLELICDVHNPGQDLVIHR 22 0 Q9UKN8;F2Z356 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 0 79.88 0.0041128 253270000.0 95889.0 127050.0 119390.0 119620.0 137560.0 149200.0 145980.0 101350.0 84021.0 116870.0 False True 95372.74427826935 131278.78244665317 136199.0742435168 134763.879735085 155077.45061800134 138886.1551790221 138918.38970224527 108913.25164487217 63315.15037371824 109411.25654255906 0.8716904210049999 1.199865412345283 1.2448360301075398 1.2317186000205036 1.4173811316907683 1.2693954860576693 1.2696901040361277 0.9954483211926812 0.5786895459800314 1.0 16.739401648789425 1.5292095582989367 4.003238891363793 0.7848461440965431 1.2241898294808486 0.5291403567071787 0.16103191294598065 0.12985030781616802 4.569301652500338 0.10044273157511721 0.04114776978628934 33.82280005790227 -1.5292095582989367 0.43934368538430557 SICEVLDLER ddPTM_BT-474_Trastuzumab_2h_R1 3 SICEVLDLER 10 0 H0Y993;A0A494C028;P35659;B4DFG0;P35659-2;H0Y8X0;D6RDA2 H0Y993 DEK Protein DEK 0 ;; 144.65 7.4045e-05 237699000.0 268598.0 314127.0 319561.0 306581.0 242824.0 270910.0 308974.0 248733.0 372490.0 317988.0 False True 267151.89821204334 324582.5273012186 364552.4111259946 345394.12316554214 273746.19706939184 252182.62935354456 294027.7472246993 267294.71950058173 280694.8306102801 297693.7335967765 0.8974051787529334 1.090323680581274 1.2245887970882772 1.1602330992743548 0.9195564641618511 0.8471210539323064 0.9876853760817057 0.897884937889321 0.9428980154163363 1.0 18.183469327843447 3.228002934850133 24.947157933648125 0.9253999228598926 1.102326052067331 0.4427725908561402 0.0878109771485506 176.76495840495437 417683.9939781984 0.026011592129450953 0.03140151937577403 1690.452355245826 -3.228002934850133 0.17692612920743844 SIDCIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIDCIR 6 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 112.66 0.062352 158880000.0 162480.0 223350.0 195860.0 210570.0 202380.0 206130.0 192570.0 184030.0 212090.0 192080.0 False True 161605.22573322494 230784.06973207401 223435.38555436154 237228.1404097716 228151.8933997605 191880.71827782688 183254.65341116174 197763.25308540498 159823.26136039675 179821.2899520387 0.8986990682600916 1.28340793125012 1.2425413343100555 1.3192439030608902 1.268770196569118 1.0670634068357792 1.0190931978078834 1.099776634558409 0.8887894275645795 1.0 17.456204313364303 2.5981113707370938 4.520261901871986 1.0224147722619827 1.2150845846052063 0.3809337365562976 0.11997382241952624 0.2518325141613359 8.184090106757365 0.039684933658783096 0.0370491684074511 396.379669063014 -2.5981113707370938 0.19266981234322356 SIDQFANLVLHQTVER ddPTM_BT-474_Trastuzumab_2h_R1 2 SIDQFANLVLHQTVER 16 0 O15116 O15116 LSM1 U6 snRNA-associated Sm-like protein LSm1 0 ; 252.76 1.5464e-26 948440000.0 321870.0 393370.0 429160.0 457750.0 444910.0 382940.0 456000.0 358830.0 462060.0 473560.0 False True 320137.0876831186 406463.0826528131 489581.99767440965 515701.10306583566 501566.6513118274 356468.2591437982 433941.5379108361 385607.71670181945 348191.50428678864 443336.9953648863 0.7221077668459213 0.9168264478318028 1.1043111736512348 1.163225962321034 1.1313440036715534 0.8040571007398306 0.9788074138809072 0.8697846575705845 0.7853878830937882 1.0 18.75804423126093 2.729675307572576 24.850102089232116 0.886488000597696 1.0165449822047028 0.1667304888166179 0.13331805704365166 1117.3839082628201 3125050.2661827323 0.04559313290107427 0.04353746985377024 536.630444295286 -2.729675307572576 0.13005698160700685 SIDTGMGLER ddPTM_BT-474_Trastuzumab_2h_R1 2 SIDTGMGLER 10 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 184.36 0.0070476 0.0 436010.0 575800.0 542370.0 524160.0 494700.0 499910.0 489230.0 414160.0 636690.0 545510.0 False True 433662.5706052646 594965.1549215503 618730.9816354492 590518.6022566641 557697.1126833757 465352.3983615609 465564.07585990854 445066.72226186655 479786.28070890193 510695.0847653923 0.8491614341745318 1.1650105369525354 1.211546772414478 1.15630367292049 1.0920354029637385 0.9112137795008124 0.9116282685073884 0.8714920811629219 0.9394769893454339 1.0 18.962102648194957 2.7594066112795548 5.236163752786134 0.9131490354877586 1.109947914761403 0.4233303746094792 0.09675577711658265 0.1598934209463118 13.610367585994133 0.030552893754174134 0.03133267555574789 574.6542345118938 -2.7594066112795548 0.19679887927364448 SIEAVHEDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIEAVHEDIR 10 0 P23919-2;P23919;H7C312;H7BZ20 P23919-2 DTYMK Thymidylate kinase 0 ; 130.94 0.00026331 1051060000.0 698280.0 889830.0 808360.0 823490.0 834620.0 944160.0 872870.0 784760.0 1051980.0 926530.0 False True 694520.5380662008 919447.4536364055 922170.0616089242 927743.7495656689 940903.9098196862 878892.4415135756 830645.9434127891 843322.7761305353 792733.6248098 867398.0621577575 0.8006941315253773 1.0600063497365546 1.0631451715662297 1.0695709271678497 1.0847429235420172 1.0132515621803726 0.9576294663910788 0.9722442473904864 0.9139213694319068 1.0 19.72633469453601 2.2917992380492525 4.874966515581082 0.9598519645834758 1.0258784706459128 0.09412639675638856 0.07909655628969017 0.42157405748168764 20.96034599487039 0.02843857953479534 0.023057916368934925 195.79393647547377 -2.2917992380492525 0.06602650606243698 SIEDFAHSSFQMALSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIEDFAHSSFQMALSK 16 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 193.69 3.3395e-10 852210000.0 177530.0 446000.0 547860.0 569780.0 524000.0 507210.0 538930.0 498490.0 438680.0 561560.0 False True 176574.19820543713 460844.84038730664 624993.9259155138 641914.0895791403 590728.2940086705 472147.76654391194 512859.8969874718 535689.8550809298 330573.19201083935 525720.7600242964 0.33587069720677704 0.8765962378316743 1.1888325009014853 1.2210171984638272 1.1236541124633728 0.8980961043313022 0.9755367031040771 1.0189627190224955 0.628799958357288 1.0 19.00393718060919 4.7040978317387605 3.4570801407661094 1.0147835200503907 0.27548597621124876 0.6144777651766358 0.1584887515037719 0.17419491146786278 3.6131764253504692 0.03957766001548507 0.31963499479638546 50593.86198874383 -4.7040978317387605 -0.739297543839142 SIEDRISNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIEDRISNLK 10 1 A0A0U1RQY8;F5H562;E7ET55;A0A669KB88;F5H748;B7ZLR4;P35670-2;P35670-4;P35670;P35670-5;P35670-3 A0A0U1RQY8 ATP7B Copper-transporting ATPase 2;WND/140 kDa 0 ; 131.28 0.00023183 438570000.0 297990.0 1160880.0 1037170.0 1432070.0 1204330.0 650760.0 743450.0 407850.0 168201.0 610670.0 False True 296385.65494980174 1199519.1890332203 1183194.5207567513 1613369.9151665543 1357694.2868768363 605774.4929242652 707486.4832451994 438285.8380203363 126750.11732792723 571696.5177791093 0.5184318003215799 2.098174733848366 2.0696199538754425 2.8220740637603887 2.3748514196852586 1.0596085057112816 1.237521064486449 0.7666407340085988 0.2217087447380616 1.0 19.124889977235835 2.604600705122576 4.235487314619747 0.8341004079659202 2.032281422676812 0.46481644769419894 0.6021326410797501 0.215558673600085 6.409878504954229 0.2088307692517386 0.1949168698918456 402.3469422421002 -2.604600705122576 1.1981810147108918 SIEEIVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SIEEIVR 7 0 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ;; 138.85 0.0063879 559720000.0 523480.0 671570.0 581360.0 614950.0 608580.0 682170.0 635750.0 530520.0 645880.0 663820.0 False True 520661.641844095 693922.801477362 663210.4347282932 692802.6069477559 686079.0556637332 635013.1935554517 604996.3436991534 570110.0963259749 486711.52834859275 621454.439275105 0.8378114451180368 1.1166109011736849 1.0671907589909477 1.1148083643201179 1.1039893068653746 1.0218177768528973 0.9735168106689379 0.9173803585520756 0.7831813526287091 1.0 19.245289101207334 1.9830004908691123 1.9161544996275781 0.887200314287525 1.0556957469352697 0.334821856853708 0.09046027208438931 0.3479970967432652 2.3759044336539272 0.05250564485164149 0.026499347399826935 96.161336526377 -1.9830004908691123 0.1684954326477447 SIEEQQKPLTDSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIEEQQKPLTDSQR 14 1 Q9UKV8-2;Q9UKV8 Q9UKV8-2 AGO2 Protein argonaute-2 0 111.43 0.0005945 384870000.0 176480.0 175510.0 158760.0 166570.0 164750.0 196650.0 191030.0 173550.0 248850.0 186830.0 False True 175529.85128877117 181351.74425196435 181112.02803334262 187657.7449211932 185729.93595024513 183056.0483643076 181789.14909453294 186501.18226904358 187524.2519191607 174906.34944678983 1.0035647753437964 1.036850547882113 1.0354800074793207 1.0729041313522045 1.0618821817371933 1.0465946430377993 1.0393513424155993 1.066291663275387 1.0721409057605968 1.0 17.416223137333457 4.728183075094422 1.390212185657285 1.053716013475769 0.9843783139785047 0.3030371968413429 0.020728101126891045 1.3281444478512676 2.3258415260887997 0.005343316906606486 0.12858760366698704 53478.975035848795 -4.728183075094422 -0.06933769949726432 SIEHLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIEHLDK 7 0 Q9Y316-2;Q9Y316;Q9Y316-3 Q9Y316-2 MEMO1 Protein MEMO1 0 ; 76.899 0.039508 437930000.0 1039390.0 1408110.0 1300920.0 1282610.0 1254700.0 1384630.0 1445670.0 1243650.0 1505780.0 1494060.0 False True 1033794.0397270855 1454978.0901295317 1484078.228200655 1444988.294491035 1414478.607810456 1288913.787168427 1375737.4191042949 1336457.4781267403 1134700.6954182598 1398707.8116708784 0.7391065032318139 1.0402301881702036 1.0610352039342614 1.0330880277024195 1.0112752613576512 0.9215032449334125 0.9835774188326414 0.9554943977400293 0.8112492730434964 1.0 20.415663186094307 1.440062248079244 10.214481278542173 0.8981210663421048 0.9768875944070404 0.060503691471539334 0.09644478726928728 0.6657240256498976 166.73474279297986 0.054866302651130676 0.023214672295207912 27.546234993604035 -1.440062248079244 0.07876652806493567 SIEIPRPVDGVEVPGCGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIEIPRPVDGVEVPGCGK 18 1 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ; 143.39 9.6508e-08 1353710000.0 781610.0 846160.0 741490.0 698440.0 713080.0 859250.0 811040.0 782260.0 1129320.0 908300.0 False True 777401.8986050345 874323.9240854784 845885.3468533834 786862.4323873343 803886.5112437059 799852.0699569348 771806.8967263266 840636.2134357928 851014.2181127043 850331.5163652472 0.9142339001240936 1.028215357491143 0.9947712516515099 0.9253596006305725 0.9453801203087578 0.940635569261166 0.9076541112170284 0.9885982081777974 1.0008028653934589 1.0 19.69766588483037 1.557314104100504 8.137068806362066 0.9982628235308066 0.9535593327814716 0.26847836268463565 0.03459436801604081 0.17857170139384007 20.875814829499767 0.019658239119640392 0.009168504929699018 36.0839526367791 -1.557314104100504 -0.044703490749334995 SIEVIENR ddPTM_BT-474_Trastuzumab_2h_R1 4 SIEVIENR 8 0 P49321;P49321-3;P49321-4;P49321-2;Q5T624;H0YF33;E9PRH9;H0YDS9 P49321 NASP Nuclear autoantigenic sperm protein 0 ;;; 176.09 0.00061035 1395360000.0 1197980.0 1442420.0 1300750.0 1359220.0 1295590.0 1441800.0 1481010.0 1208360.0 1467980.0 1567930.0 False True 1191530.2087880904 1490430.077738696 1483884.2936783186 1531297.1126360341 1460575.7069364367 1342131.7596321313 1409367.8882923857 1298533.959127752 1106215.9989242076 1467863.3650275907 0.8117446331700593 1.0153738510332542 1.010914455004759 1.0432150219971266 0.9950351931489093 0.9143437949395951 0.9601492358697122 0.8846422562656874 0.7536232767165046 1.0 20.48528625155753 1.7008779493341384 3.4690214788325244 0.8605219183135754 0.9714133887429529 0.17194724954847584 0.08304963528741573 0.2812316302390737 7.713905254214395 0.04647223620820072 0.021616475730921368 50.22014349931663 -1.7008779493341384 0.11089147042937753 SIFEMYEPSELESSHLTDQDNEIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SIFEMYEPSELESSHLTDQDNEIR 24 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 ;;; 344.32 4.684999999999999e-88 431975000.0 319300.0 444938.0 417483.0 443965.0 437501.0 447047.0 441350.0 381629.0 449433.0 473356.0 False True 317580.9242775647 459747.4923592987 476260.9775727134 500170.92347924295 493214.15907840984 416143.69312544394 420000.2143792715 410108.0938527962 338676.25924365746 443146.0148195396 0.71665075089729 1.0374627706999004 1.074726978570842 1.1286819846116078 1.1129834018235711 0.9390667617645355 0.9477693589330963 0.9254468733512197 0.7642543268307966 1.0 18.757422613730135 2.2464622187310748 1.9498511884126575 0.8957876056420943 1.0229285128175634 0.13348282592928873 0.12198147160778954 0.6236652408959621 4.786245776922295 0.06059740393828931 0.03965603662723667 176.38523121989905 -2.2464622187310748 0.1271409071754691 SIFKPFIFVDDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIFKPFIFVDDVK 13 1 Q12765;Q12765-2;Q12765-3 Q12765 SCRN1 Secernin-1 0 ; 153.24 4.1599e-05 1765140000.0 2569000.0 2398400.0 2326600.0 2087000.0 2071700.0 2729400.0 2918400.0 2560700.0 4167700.0 2832300.0 False True 2555168.7894427325 2478229.2941365843 2654165.0568302763 2351213.9860150674 2335518.7150720637 2540723.002316504 2777225.8426293526 2751792.4369711266 3140626.179318808 2651540.189145972 0.96365455817048 0.9346376510833845 1.000989940750304 0.8867351872091986 0.880815883776706 0.9582064841848914 1.0474009988601616 1.0378090621577358 1.1844535459710925 1.0 21.338399184761982 2.1719043717778637 2.2740638126020225 1.076175126272087 0.9330317280244789 0.5829571088201246 0.05440186335299403 0.2176522992242809 2.254186921226208 0.025869115912130564 0.016555647238599192 148.56084869894207 -2.1719043717778637 -0.14314339824760802 SIFKTGCETCEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIFKTGCETCEYK 13 1 REV__O43296 0 63.727 0.060981 643930000.0 543550.0 789640.0 738310.0 724800.0 728690.0 713450.0 804630.0 707210.0 550660.0 871410.0 False True 540623.5871940824 815922.6900525395 842257.6304944393 816559.6056845807 821484.3522159872 664130.880780651 765706.9729149034 759985.6013396145 414957.2214659634 815795.8677483649 0.6626946869518094 1.0001554583802006 1.0324367452597059 1.0009361875518243 1.006972926307316 0.8140895376360309 0.9386011907957941 0.9315879515756933 0.5086532524505976 1.0 19.637848673901104 1.3880287683262953 24.91049070509644 0.7429155526277237 0.932017230378001 0.1618474738585095 0.15249646987505264 29.748738544089328 8311.48413440131 0.09419897225010589 0.0343992254529744 24.435924146069627 -1.3880287683262953 0.1891016777502773 SIFQHIQSAQSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIFQHIQSAQSQR 13 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ; 112.72 0.00087827 1425250000.0 1326080.0 1551150.0 1761760.0 1456680.0 961560.0 1319930.0 1537300.0 1221540.0 2372700.0 1465460.0 False True 1318940.5326213387 1602779.0900600222 2009800.494507569 1641095.5386432353 1084008.9663873613 1228686.3458810078 1462934.9259437039 1312697.517654435 1787979.877551105 1371933.088156572 0.9613738046026443 1.1682633095566135 1.4649406096095265 1.1961921122904975 0.7901325332446888 0.8955876612991084 1.06633110504639 0.9568232802215374 1.303255889799672 1.0 20.387778689509307 3.437507404519413 24.412450140288943 0.9962438588295011 1.2177608280187697 0.24262815789359837 0.16811674605250485 157.45012799473557 97029.68045113557 0.047390654688704924 0.06416735731792854 2738.466323446571 -3.437507404519413 0.22151696918926866 SIGGSAS(ph)S(ph)HAQRPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIGGSASSHAQRPSR 15 1 REV__Q08AD1-2 2 SIGGS(0.558)AS(0.764)S(0.678)HAQRPSR 98.582 0.034345 174850000.0 336460.0 196030.0 198840.0 239020.0 208240.0 267360.0 183850.0 225610.0 315850.0 273320.0 True False 334648.53674422053 202554.7400473628 226834.94365173715 269279.9074927269 234758.12966481972 248878.03249774323 174956.4731247968 242446.163824367 238012.99967316393 255876.48359897538 1.3078518667964085 0.7916113946790767 0.886501723258188 1.0523823983557559 0.9174666087437188 0.9726491039629865 0.6837536246550848 0.947512488894223 0.9301870821634076 1.0 17.965088036608524 2.4093299348277255 24.999968891812703 0.8782138017438934 0.9744158642569437 0.08727381778090837 0.1489288835641962 133.45849776145388 49214.497199218786 0.04946339761571483 0.04138404970099051 256.6433023006412 -2.4093299348277255 0.0962020625130503 SIGSLPCLEHVSLLNNPLSIIPDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIGSLPCLEHVSLLNNPLSIIPDYR 25 0 Q9Y2I1;C9J715;Q9Y2I1-4;Q9Y2I1-3 Q9Y2I1 NISCH Nischarin 0 74.0 0.033345 83812000.0 15637.0 23318.0 27599.0 35394.0 23659.0 23265.0 37137.0 27812.0 27483.0 30823.0 False True 15552.812129434024 24094.12553397135 31484.699305191607 39874.8767709714 26671.83341212047 21656.745309919213 35340.54143288316 29887.472666474416 20710.18290333248 28855.849751102047 0.5389829883224991 0.8349823603115746 1.0911028292968277 1.3818645825686877 0.9243128738948967 0.7505149041432096 1.2247271086353455 1.0357509109685106 0.717711766659775 1.0 14.816576195869622 4.583246678162411 2.8997441397737176 1.0274964747541622 0.5250092272688117 0.37496279607851424 0.18847331631343717 0.32294119218935086 4.452880814043831 0.04757189003844926 0.3122160972756967 38304.22485638395 -4.583246678162411 -0.5024872474853505 SIGTANRPMGAGEALR ddPTM_BT-474_Trastuzumab_2h_R1 6 SIGTANRPMGAGEALR 16 1 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EQR9;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ;;;;; 189.81 8.7378e-10 3845920000.0 1560122.0 1852634.0 1897370.0 1819499.0 1407899.0 1648193.0 1816797.0 1424939.0 2411180.0 1759047.0 False True 1551722.476497848 1914297.802749098 2164503.203764318 2049847.3868425651 1587186.5923788417 1534257.2973389917 1728911.5882714763 1531275.1838736306 1816976.997156686 1646783.1144640937 0.9422749497907131 1.1624468249251272 1.3143826802406242 1.2447585652526192 0.9638103393447496 0.9316693156878033 1.049872064563954 0.9298584436675789 1.1033493003406085 1.0 20.651219130283383 3.230449150980893 24.994145928369694 0.9894000655939416 1.176315615682797 0.3985722631368741 0.10148935417415078 169.83378739763577 523314.4748743962 0.029961051100994788 0.0364022660630802 1700.0008987555025 -3.230449150980893 0.1869155500888554 SIHEIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIHEIPR 7 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;O75376;O75376-2;A0A088AWL3 C9J0Q5;Q9Y618;O75376 NCOR2;NCOR1 Nuclear receptor corepressor 2;Nuclear receptor corepressor 1 0 102.71 0.0085387 119300000.0 104730.0 114120.0 102270.0 114430.0 104820.0 105250.0 116440.0 107150.0 126790.0 107020.0 False True 104166.14531659691 117918.41521300317 116668.72705322441 128916.82626722779 118168.20568318467 97974.31523185021 110807.35235600393 115146.07709667538 95544.30339895676 100189.89197556832 1.0396871706578765 1.176949220004729 1.1644760240052412 1.2867248753862779 1.1794423903760713 0.9778862248473291 1.1059733688806124 1.149278383539471 0.9536321630355246 1.0 16.612377438735248 2.7690979195341097 24.039447416348075 1.0606925794679354 1.1761105421115399 0.3927759293580708 0.07930589291532006 515.2684945469769 405626.3232525759 0.024972657196259997 0.026483885886773122 587.6218275479815 -2.7690979195341097 0.11541796264360449 SIHEVDISNLEAALR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIHEVDISNLEAALR 15 0 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 0 ; 231.13 2.3576999999999996e-13 128769000.0 79313.0 148984.0 143388.0 144934.0 138457.0 155384.0 163440.0 137349.0 149928.0 156890.0 False True 78885.98762050271 153942.84237727028 163575.78404916174 163282.6295395821 156088.6782510657 144642.6698145923 155533.78279856796 147598.67982409027 112980.25333227198 146877.14587971312 0.5370882389361472 1.048106166927724 1.1136911945655874 1.1116952781292773 1.062715899850726 0.9847867682086443 1.0589379434561201 1.0049124997633605 0.7692160182959885 1.0 17.16425040408827 4.74025150923771 24.80829181377977 1.0245812604546518 0.5370880570800306 0.705156291370777 0.09300731147482226 72.2374700312299 1059747.7835538927 0.02239528360309788 0.14326222890917625 54985.921692041295 -4.74025150923771 -0.4874932033746212 SIIDEFLHINDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIIDEFLHINDFK 13 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 0 ; 173.06 2.2325e-05 165112000.0 363870.0 358370.0 333030.0 335990.0 361340.0 401970.0 377590.0 370060.0 549330.0 388530.0 False True 361910.9643497576 370298.12881076033 379917.729251348 378526.2995501691 407354.5071700245 374182.76003559935 359324.52916612447 397675.75632660446 413954.98214487656 363733.6827627316 0.9949888654822132 1.018047396650672 1.0444942199625034 1.0406688120689853 1.119925171834436 1.0287272742889852 0.9878780717718593 1.0933157284364388 1.1380716215245454 1.0 18.47252300403765 4.323328297872969 1.448915292217021 1.0611647167285139 0.9903786818251903 0.1753643277119915 0.0457519518451093 1.0559317147559486 3.4144756157493092 0.01314559914062197 0.087447342424893 21053.693582110627 -4.323328297872969 -0.07078603490332358 SIIECVDDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIIECVDDFR 10 0 Q9Y6Y8;Q9Y6Y8-2;H7C0V8 Q9Y6Y8 SEC23IP SEC23-interacting protein 0 ; 153.24 3.8618e-05 180722000.0 224180.0 285100.0 255210.0 279650.0 253670.0 252080.0 253010.0 205482.0 269270.0 265250.0 False True 222973.0397887393 294589.3811534106 291141.34967491415 315053.6613268392 285973.370880113 234654.3029324925 240770.93970794024 220816.1102564541 202912.01653314216 248321.51790804966 0.897920734647343 1.1863224082839785 1.1724370571168952 1.268732826623183 1.15162541405697 0.9449616163323471 0.9695935404079428 0.8892346990977219 0.8171342469333565 1.0 17.921849755823374 2.6940868787556767 4.204381680814232 0.9153770740258481 1.1485446832445396 0.526144763906811 0.09995921199247047 0.1683565172416096 6.557934788182785 0.03325946142876724 0.03204345073278896 494.4095816193275 -2.6940868787556767 0.2331676092186915 SIIPLPHPVRPEDIE ddPTM_BT-474_Trastuzumab_2h_R1 4 SIIPLPHPVRPEDIE 15 1 P61599;A8MZB2 P61599 NAA20 N-alpha-acetyltransferase 20 0 ;;; 151.9 2.6664e-06 883390000.0 1028480.0 1414440.0 1269290.0 1356850.0 1317780.0 1235500.0 1242660.0 1081200.0 1226170.0 1261990.0 False True 1022942.77795487 1461518.780352965 1447994.9991335422 1528627.0708790363 1485591.4719060021 1150092.7930541665 1182547.7883778058 1161884.6342223561 923996.8333362143 1181448.7177560024 0.8658376471031325 1.237056470067458 1.225609692043009 1.2938581657462467 1.2574320404931978 0.9734597666148453 1.0009302736591825 0.9834405986145505 0.7820879733918691 1.0 20.17212557803096 2.683721836037253 6.985705154241092 0.9533644160343814 1.1884938223261028 0.44847588771815317 0.12598310208673447 0.23652083884536898 25.620338072708535 0.0410701635238392 0.03883557628538658 482.7495037783272 -2.683721836037253 0.2351294062917214 SIKDTICNQDER ddPTM_BT-474_Trastuzumab_2h_R1 1 SIKDTICNQDER 12 1 Q9ULV4;Q9ULV4-2;Q9ULV4-3;B4E3S0;H0YHL7 Q9ULV4 CORO1C Coronin-1C;Coronin 0 104.17 0.0019758 207920000.0 274580.0 258870.0 251380.0 267230.0 218400.0 313410.0 332990.0 274100.0 350890.0 318560.0 False True 273101.6917887061 267486.3314597807 286772.1189658705 301061.2906002909 246211.9454417816 291744.70438778354 316882.00155467 294554.7338515977 264417.86118510837 298229.22806706274 0.9157442198364736 0.8969152124808877 0.9615828764489313 1.0094962608178408 0.8255795283298523 0.9782565789365856 1.0625450885833791 0.9876789601097088 0.8866262468601797 1.0 18.18606213085439 2.5023727612454643 24.955196897270433 0.9907389182926807 0.9249892357569172 0.20589924493484701 0.0594366454974536 1137.9736849342294 1124619.276908033 0.01943739759919376 0.01825280656424295 317.9601998230557 -2.5023727612454643 -0.06574968253576352 SIKPSDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIKPSDSPR 9 1 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 S(0.001)IKPS(0.008)DS(0.991)PR;SIKPS(0.014)DS(0.986)PR 85.845 0.008805200000000001 1071480000.0 2428500.0 2367900.0 2181000.0 1990200.0 2113500.0 2629000.0 2682000.0 2453800.0 3436400.0 2477700.0 True False 2415425.2258317163 2446714.120074222 2488065.8424081644 2242159.1159401992 2382641.697304052 2447263.418000327 2552261.413765047 2636915.0161439297 2589545.2654008577 2319571.06473431 1.0413240889898692 1.0548131752775056 1.0726404895437658 0.9666266104233466 1.0271906446535046 1.0550499854078164 1.100316111270939 1.1368114804648028 1.1163897087574126 1.0 21.145426616059122 2.3467223987360146 3.3382075972911243 1.104178314964011 1.032905450619468 0.24136311476557248 0.043179923218455284 0.261809442590551 5.773835322716763 0.01600269493065299 0.012830194871073246 222.1889203886184 -2.3467223987360146 -0.07127286434454305 SILAKPSSS(ph)PDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(0.005)ILAKPS(0.038)S(0.171)S(0.786)PDPR 76.82 0.016733 783750000.0 2082600.0 2076800.0 1791600.0 1753500.0 1826300.0 2480800.0 2238900.0 2309200.0 3559600.0 2604500.0 True False 2071387.512998612 2145925.032547888 2043841.7071336382 1975492.9202095934 2058868.4796718224 2309308.135175051 2130595.8535714285 2481524.229880005 2682384.276196278 2438278.580175366 0.8495286510082182 0.8800983817007278 0.8382314161110505 0.8101998419177812 0.8443942773445291 0.9471059434927084 0.8738114959030612 1.0177361397734663 1.100113948424776 1.0 21.217431536659312 1.786055179732678 1.5884841036139221 1.0588101703902324 0.8540786257710583 0.7884674481399274 0.04168059011050374 0.15755100247871798 0.7651078140634758 0.031025813694625343 0.012679662911200706 61.101965370525456 -1.786055179732678 -0.2047315446191741 SILDADPEAQALLEISGHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SILDADPEAQALLEISGHSR 20 0 Q6P9B6 Q6P9B6 TLDC1 TLD domain-containing protein 1 0 123.61 2.8381e-05 44631000.0 53200.0 70772.0 70114.0 85341.0 71432.0 74097.0 71775.0 63751.0 89526.0 79772.0 False True 52913.577111075654 73127.60323742265 79985.44175818705 96145.16184979022 80528.4417893651 68974.84879557631 68302.96904287333 68508.4233410186 67463.51688693906 74680.88266375485 0.7085290803178522 0.9792011104993801 1.0710296786168902 1.28741330338417 1.0783006161287414 0.9235944506190489 0.9145977739765396 0.9173488702520123 0.9033572512886404 1.0 16.18845135862798 2.7255720340226928 22.85971528299987 0.9245535216647255 1.0395036327561884 0.0998520484879738 0.13543716356540675 533.8581976914031 939578.4519402914 0.046600950513653754 0.04424898436916841 531.5841631186372 -2.7255720340226928 0.11495011109146291 SILEKDPSIHQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SILEKDPSIHQAR 13 1 Q99614;H0YB37 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 78.486 0.013879 116190000.0 216370.0 295150.0 270400.0 293260.0 294360.0 325400.0 308460.0 286490.0 382310.0 343190.0 False True 215205.08796096672 304973.8893280572 308469.96964106685 330386.6859313744 331845.00119158754 302905.8639092071 293538.61136836995 307869.33856674284 288094.8231915385 321287.32038025896 0.6698212917530053 0.949224790343752 0.9601062664906224 1.0283215831248675 1.0328605585767687 0.942788104898455 0.9136327291750976 0.9582368149554259 0.896689053432188 1.0 18.29350452033957 4.740015397420955 4.678352793459873 0.9650979882417784 0.6518325843553684 0.8159149310556482 0.04207933829668033 0.07975363047086323 4.785345659564677 0.010801339831923712 0.08200656862895658 54956.03575547886 -4.740015397420955 -0.31326540388641 SILPYPVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SILPYPVSPK 10 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 SILPYPVS(1)PK;SILPYPVS(1)PK 152.47 1.8858e-05 1051150000.0 2121400.0 1854590.0 1686030.0 1704710.0 1616570.0 2195100.0 2131630.0 1976470.0 3148800.0 2029310.0 True False 2109978.618109696 1916318.9070266704 1923408.3687645255 1920526.111212147 1822430.6073389207 2043357.903709591 2028514.9132826207 2123964.227711299 2372820.4317582976 1899797.6984203008 1.1106333163073956 1.0086962988849324 1.0124279918666377 1.0109108526708301 0.9592761423252004 1.0755660486422642 1.0677531165393817 1.1179949472922273 1.248985843982925 1.0 20.857414369446346 2.0555539513328673 1.806578017973091 1.1340159270722818 1.021087857499832 0.2745362552731563 0.06759438748492261 0.39988523712235124 2.467440436041229 0.037956384901905914 0.020082970712620062 113.64594684566542 -2.0555539513328673 -0.11292806957244972 SILS(ph)PGGSCGPIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SILSPGGSCGPIK 13 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 SILS(1)PGGSCGPIK;SILS(1)PGGSCGPIK 173.72 2.2239e-05 1384860000.0 1261130.0 1279570.0 1132760.0 1058360.0 836850.0 1158890.0 1148580.0 1040680.0 1847660.0 1490560.0 True False 1254340.2162047145 1322159.7139335994 1292242.7618735775 1192348.2674839036 943417.8871014419 1078778.6620336242 1093018.7973983071 1118340.8260659631 1392328.9503755518 1395431.1846673822 0.8988907729647031 0.9474918781098848 0.9260526610501393 0.8544658314828432 0.676076253324034 0.7730790840042493 0.7832839121040865 0.8014302950614746 0.9977768632907758 1.0 20.412279549344753 3.6318166690843574 4.386301158311046 0.8167543028229124 0.9262165379143064 0.11208733904550328 0.09539949797385103 0.35596071811316893 11.391054949857619 0.025417254618779934 0.04046611244784912 4283.6765323131885 -3.6318166690843574 0.10946223509139397 SILTDNPTWIIDPIDGTTNFVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SILTDNPTWIIDPIDGTTNFVHR 23 0 E5RG94;E5RHE9;E5RI82;E5RIP7;E5RGY4;H0YBL1;P29218-2;P29218;P29218-3 E5RG94 IMPA1 Inositol monophosphatase 1 0 58.324 0.075411 44674000.0 46740.0 57706.0 52170.0 52727.0 58161.0 65646.0 57914.0 55823.0 79637.0 64832.0 False True 46488.357033302156 59626.70932598635 59515.08253023103 59402.23279377887 65567.45860274474 61108.04653406219 55112.47856703544 59988.79572345038 60011.52843112794 60694.366254532244 0.7659418806408695 0.9824092911017722 0.9805701287108645 0.9787108171566602 1.080289039147 1.006815793706373 0.9080328532620606 0.9883750243288985 0.9887495682788628 1.0 15.88927498904766 4.739260698431091 5.578045989592225 0.9893339388009986 0.7580823708863844 0.7455486705039742 0.03936153834945066 0.07549119703432318 9.432602596363223 0.009925111130160369 0.06659761910438995 54860.6183595322 -4.739260698431091 -0.2312515679146142 SILYDER ddPTM_BT-474_Trastuzumab_2h_R1 4 SILYDER 7 0 A0A024RA52;P25787 A0A024RA52 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 0 ;;; 124.08 0.0097275 4712500000.0 6639340.0 8415040.0 8017160.0 7936790.0 6746690.0 7537620.0 7982290.0 6617480.0 9452280.0 7726630.0 False True 6603594.531140021 8695129.519400906 9145906.441596065 8941586.800222585 7605840.980735404 7016562.07104893 7596156.1373909805 7111309.96048257 7122892.24806287 7233509.858299253 0.9129170569337777 1.2020623030498379 1.2643801723865289 1.2361339066903458 1.051473092555333 0.9700079502896632 1.050134206795288 0.9831064171874352 0.9847076160255085 1.0 22.786264413798673 3.06136860390902 5.782836265015508 1.0006953158606107 1.1644512983838406 0.39127386357488014 0.09157341868609416 0.19879739505621963 13.121687100265117 0.027155095797167943 0.03247564697038219 1151.7775360282515 -3.06136860390902 0.16375598252322998 SIMEECGGVHIHFPVEGSGSDTVVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIMEECGGVHIHFPVEGSGSDTVVIR 26 0 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7BZC3;H7C2D1 Q00341 HDLBP Vigilin 0 188.07 6.128400000000001e-18 127830000.0 55929.0 77300.0 85663.0 70446.0 71898.0 78884.0 77906.0 14503.0 90830.0 43564.0 False True 55627.88447829607 79872.88377116331 97723.6058038562 79364.4563770089 81053.78412716671 73430.93475296226 74137.389150179 15585.287504741775 68446.16355964386 40783.708222983165 1.3639731868949487 1.9584507454413356 2.396143216540208 1.9459843117523095 1.9874059436677176 1.800496765803683 1.8178187413669211 0.38214493443141284 1.6782721959812337 1.0 15.315705336652032 1.8778372469520939 7.721389568401684 0.9743802996665136 1.9270502645567085 0.5334808715074638 0.37496815937647004 0.18757884714253023 11.042049790951243 0.15539479365458891 0.09683057527573717 75.48093077985017 -1.8778372469520939 0.9526699648901948 SINHQIES(ph)PSER ddPTM_BT-474_Trastuzumab_2h_R1 2 SINHQIESPSER 12 0 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;D6RD46;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 SINHQIES(0.987)PS(0.013)ER;SINHQIES(0.993)PS(0.007)ER 201.65 1.5297e-07 1279350000.0 373150.0 633150.0 549080.0 639850.0 585340.0 509770.0 493200.0 441150.0 451100.0 584220.0 True False 371141.001860862 654224.0150027424 626385.6913110844 720854.944394702 659879.5794180055 474530.799769504 469342.0317930363 474070.85311431024 339932.44943031255 546934.5794240941 0.6785839034929233 1.1961650252423626 1.1452662071040562 1.3179911666103483 1.2065055021988904 0.8676189394884685 0.8581319401805598 0.86677798579401 0.6215230526990109 1.0 19.061008752454885 2.671794491576735 6.113103138516369 0.8363860753976455 1.127051384613842 0.3513535507939699 0.1799941538984323 0.24631243971190356 17.64463325209028 0.0583319843291798 0.05510397621558331 469.6718070168741 -2.671794491576735 0.2906653092161964 SINKLDS(ph)PDPFK ddPTM_BT-474_Trastuzumab_2h_R1 4 SINKLDSPDPFK 12 1 P42566;B1AUU8;P42566-2 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 SINKLDS(1)PDPFK;SINKLDS(1)PDPFK;SINKLDS(1)PDPFK;SINKLDS(1)PDPFK 149.3 4.0669e-05 1650610000.0 4398940.0 3169230.0 2876220.0 2752950.0 2755710.0 4524960.0 4383990.0 3921570.0 6769700.0 3998790.0 True False 4375256.595808175 3274715.9047100125 3281166.775447595 3101473.1877336795 3106633.334127162 4212160.165810098 4171919.6552318614 4214217.466728964 5101398.144332495 3743583.798663636 1.1687347822613268 0.8747542677898655 0.87647744832609 0.8284770301764919 0.8298554276349178 1.1251678584872953 1.1144186639340437 1.125717412345179 1.36270440804706 1.0 21.835988618299705 2.6659238875066142 6.179879013533777 1.1503199026489153 0.9066939991096825 0.4635403721723008 0.12354506044711054 0.20414754440570743 13.859940006766202 0.039820509910354684 0.03757410486384778 463.36570523489917 -2.6659238875066142 -0.24362590353923275 SINNAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SINNAEK 7 0 P62244;I3L3P7;I3L246;H3BN98;H3BV27;H3BT37;I3L303 P62244 RPS15A 40S ribosomal protein S15a 0 ; 101.64 0.020724 159842000.0 195843.0 192765.0 172755.0 171841.0 177197.0 144472.0 200873.0 196764.0 261440.0 226570.0 False True 194788.60304820267 199181.06649609664 197077.4023866216 193596.05298074536 199761.98762109573 134484.99069050702 191156.0055806216 211447.5288273469 197011.61511651747 212110.10862366366 0.91833719907148 0.9390456107374573 0.9291278179310453 0.9127148830244255 0.9417843822593265 0.6340338589384111 0.9012112002628792 0.9968762460185603 0.9288176617082654 1.0 17.69445385208847 1.8457919569865802 6.117490348669414 0.9721088990265807 0.8793239292756236 0.19388874815738444 0.08729469502551589 0.41516684189489145 19.63846585578931 0.040814313654289405 0.02449035460319374 70.1119356030375 -1.8457919569865802 -0.09278496975095707 SINPLGGFVHYGEVTNDFVMLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SINPLGGFVHYGEVTNDFVMLK 22 0 P39023;G5E9G0 P39023 RPL3 60S ribosomal protein L3 0 ;; 262.78 2.2391999999999997e-37 3252100000.0 2694125.0 2912045.0 2816803.0 2775815.0 2927981.0 3361680.0 3204433.0 3115054.0 3791550.0 3434220.0 False True 2679620.1303454265 3008970.657456625 3213384.3783094203 3127232.894389278 3300842.0248469478 3129294.9741435302 3049422.3336671847 3347515.147403705 2857173.3066670387 3215045.1394163338 0.8334626775510501 0.9359030828422147 0.9994834408119025 0.9726870879819132 1.0266860593584666 0.9733284723683939 0.9484850760822547 1.0412031564855166 0.8886883955805784 1.0 21.616407562539894 4.666849471117183 2.4434982840267194 0.9849867885175878 0.81169811744164 0.5489080154899697 0.04047067151003864 0.30269832637346855 2.498656383990707 0.009467698635703787 0.10253782015762627 46435.429954403466 -4.666849471117183 -0.1732886710759478 SINQQSGAHVELQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SINQQSGAHVELQR 14 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 ;;; 211.7 3.4659e-09 858800000.0 431985.0 514114.0 493280.0 558198.0 544599.0 531183.0 562970.0 500875.0 583030.0 576971.0 False True 429659.2407580453 531225.9737015247 562729.5363333785 628865.8095666697 613950.4545588312 494463.56948028377 535736.9903457528 538252.8358917143 439350.0687017412 540148.2168102752 0.795446929909909 0.9834818614019706 1.0418057837096126 1.164246756714845 1.136633308139715 0.9154220158315584 0.9918333036614062 0.9964909984712091 0.8133879832025088 1.0 19.042995811929114 -0.635914424942494 7.576405389645296 0.9999796202799623 0.99268929335001 0.0 0.1138806292066164 0.0 0.0 0.11199627803772032 0.026397775889375353 0.23125204132147212 0.635914424942494 -0.007290326929952351 SIPLDEGEDEAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIPLDEGEDEAQR 13 0 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 170.52 6.201e-05 133450000.0 140770.0 142210.0 113930.0 131750.0 144710.0 160970.0 146650.0 127690.0 175070.0 138650.0 False True 140012.10996101738 146943.37388223968 129970.35370268782 148429.53649136808 163137.96073663092 149842.52278262176 139555.97924259666 137218.8761966819 131926.34431781183 129801.23829576277 1.0786654410953176 1.1320644996268614 1.0013028797655974 1.1435140252911857 1.2568290016225245 1.154399794254607 1.0751513704715736 1.0571461258637413 1.016372001145373 1.0 16.985944621060725 1.689326551093818 1.8196559373668066 1.0110796796761718 1.1271402930359715 0.3701359567456878 0.06116957897445915 0.39020124441377646 2.6390995485609956 0.05003132706195206 0.019360468604898862 48.90199209292456 -1.689326551093818 0.11606061335979967 SIPLDEGEDEAQRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIPLDEGEDEAQRR 14 1 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 194.12 1.4855000000000002e-07 0.0 296080.0 374530.0 314410.0 340010.0 316140.0 544210.0 345210.0 250210.0 391830.0 392080.0 False True 294485.9381775803 386996.0046418343 358676.1950992893 383055.23113798926 356398.5550914139 506590.0436325444 328510.87346973625 268881.94074063585 295268.74675300275 367057.11872342415 0.8022891347313008 1.0543209350843132 0.9771672494643815 1.0435848035591966 0.9709621116487829 1.3801395417541478 0.8949857030760046 0.7325343305580654 0.8044217962041117 1.0 18.485645056543643 2.010651423881322 24.99998732594988 0.8153901653524636 1.0419396503266325 0.25686791168695056 0.14908621645518108 238.0113861857567 558634.8496518796 0.054712140936206195 0.04036933685377431 102.48290414479429 -2.010651423881322 0.22654948497416894 SIPLECPLSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIPLECPLSSPK 12 0 Q92667-2;Q92667;I3L2A2;I3L2N7 Q92667-2 AKAP1 A-kinase anchor protein 1, mitochondrial 1 SIPLECPLS(0.03)S(0.97)PK;SIPLECPLS(0.025)S(0.975)PK 161.48 6.8457e-05 421030000.0 403440.0 393700.0 360680.0 330030.0 387180.0 539820.0 322830.0 331080.0 454670.0 367290.0 True False 401267.92386639817 406804.0665033248 411460.60891323973 371811.76416126126 436485.07800434454 502503.51399959513 307213.4795696386 355786.87079017545 342622.67076586233 343849.23774721095 1.1669879697723802 1.1830884639110255 1.1966308595272643 1.0813220543900337 1.2694083048258407 1.4614065085379735 0.8934540078739218 1.0347176370701765 0.9964328349558524 1.0 18.3914166218343 2.211843758541768 24.99986546940578 0.9862381608774535 1.2184993592911024 0.599795625493931 0.09800588017337747 166.4310167806209 155734.1157506549 0.038007173603190454 0.02807799092875863 162.87099837412805 -2.211843758541768 0.2322611984136489 SIPSLVDGFKPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIPSLVDGFKPGQR 14 1 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 121.56 0.00010384 850780000.0 242480.0 369600.0 359720.0 349080.0 346580.0 422030.0 378150.0 373790.0 474240.0 368050.0 False True 241174.5146220604 381901.9125720822 410365.44925770967 393273.4922080212 390714.90865939885 392856.0594517604 359857.43982671615 401684.10786716023 357369.9064904267 344560.7338965419 0.6999477621686158 1.108373285177505 1.190981469702019 1.14137640630318 1.1339507675204663 1.1401649137702374 1.0443948030792367 1.1657860816716576 1.0371753694886514 1.0 18.39439877599831 4.737959977406824 6.751728219661104 1.1173253072675071 0.6928618293509896 0.8104041425940516 0.05887435258320837 0.040621649167033605 12.713471512839307 0.012993028415096463 0.07920030744726472 54696.55547273757 -4.737959977406824 -0.4244634779165175 SIQEIQELDKDDESLR ddPTM_BT-474_Trastuzumab_2h_R1 9 SIQEIQELDKDDESLR 16 1 P52565;J3KTF8;J3QQX2;J3KRE2;J3KRY1;P52565-2;J3KS60 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ;;;;;;;; 305.43 1.9883999999999996e-46 34693150000.0 20692055.0 18155259.0 17057945.0 16233431.0 15949322.0 20926945.0 20644180.0 19770369.0 27809720.0 20773658.0 False True 20580651.274983425 18759545.820729166 19459555.385684136 18288581.700148832 17980373.61766212 19480314.54887972 19645542.144973952 21245734.326679606 20956387.137156192 19447865.361216594 1.0582473136628074 0.9646069361493992 1.0006010955058777 0.9403901847562338 0.9245422715399408 1.0016685218177126 1.0101644463330959 1.0924455682960643 1.0775674732378562 1.0 24.213108474857748 2.029172563158505 2.8558618272807337 1.0651764969344515 0.9770251663501414 0.38237397050675515 0.04163647091603301 0.2352838689903036 3.739721399891488 0.01998442062641662 0.011927529113853504 106.94797433408591 -2.029172563158505 -0.08815133058431013 SIQEIQELDKDDESLRK ddPTM_BT-474_Trastuzumab_2h_R1 5 SIQEIQELDKDDESLRK 17 2 P52565;J3KTF8;J3QQX2;J3KRE2;J3KRY1;P52565-2;J3KS60 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ;;;; 272.76 6.8181e-36 15219830000.0 5439850.0 4217530.0 3788110.0 3578960.0 3586060.0 5348610.0 5191530.0 5008210.0 7906790.0 5407650.0 False True 5410562.4520241525 4357907.936499273 4321442.961157626 4032055.9690409647 4042723.484757117 4978873.179973652 4940395.860329482 5381948.06137508 5958267.55005787 5062529.147277917 1.0687469236465277 0.8608163646509546 0.853613448029476 0.7964509145016914 0.7985580659680466 0.9834754596229345 0.9758750451809043 1.063094730875557 1.176934962095297 1.0 22.271426878482824 2.127462208166194 1.5928532695629682 1.0872261578515634 0.8730805940002414 0.49925587481680356 0.08545534297317679 0.31033945065177987 1.5106451062941963 0.0516656702278241 0.028155714978767055 134.11032289821924 -2.127462208166194 -0.214145563851322 SIQFVDWCPTGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 273.44 8.957399999999997e-32 1014600000.0 1406500.0 1686700.0 1369000.0 1382200.0 1323500.0 1678700.0 1636600.0 1529500.0 1976000.0 1598700.0 False True 1398927.560276842 1742840.7898683199 1561743.3004386865 1557186.37827984 1492039.8800009047 1562655.4202347472 1557431.405580865 1643639.0566436276 1489041.2770434453 1496669.5972840702 0.9346936443523702 1.164479316631382 1.0434790038313748 1.0404342956558927 0.9969066537520593 1.044088436800225 1.0405980106812192 1.0981976647526317 0.99490313676815 1.0 20.51332433850244 4.023731397110553 24.998161684787483 1.0384529557226165 1.0631845764155339 0.0 0.05956640969043904 986.0737546676118 1038693.6285393772 0.01399872835966509 0.0302385623710748 10561.640897386424 -4.023731397110553 0.024731620692917344 SIQGSSTSSS(ph)ASSTLSHGEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIQGSSTSSSASSTLSHGEVK 21 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 SIQGSSTS(0.001)S(0.209)S(0.781)AS(0.009)STLSHGEVK 189.64 1.3444999999999999e-17 228300000.0 174520.0 178650.0 161630.0 155190.0 159160.0 204800.0 212100.0 173340.0 243370.0 208940.0 True False 173580.40371099464 184596.25725379467 184386.09908685536 174837.0380880109 179428.08258477075 190642.65804734366 201839.91269931648 186275.5110026848 183394.72449092267 195605.2703174662 0.8874014663780514 0.9437182186052351 0.9426438192979044 0.8938258044082933 0.9172967696297755 0.9746294552183167 1.0318735909913443 0.9523031291557775 0.9375755785786043 1.0 17.577585716702618 2.7254458293815693 6.786615611330992 0.9789190043740467 0.9185274948753129 0.5336060034163749 0.029112122832020026 0.13550952113051126 33.47369132615857 0.009568459583989653 0.009357814647684598 531.4297088383439 -2.7254458293815693 -0.06039150949873373 SIQPQVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIQPQVSPR 9 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 SIQPQVS(1)PR;SIQPQVS(1)PR 124.06 0.00056671 3007100000.0 1923510.0 2255970.0 2241500.0 2262000.0 2113600.0 2249710.0 2273600.0 2117400.0 2577500.0 2334800.0 True False 1913154.035882053 2331058.597687338 2557083.7165327333 2548368.9680719133 2382754.4317113087 2094192.8429477068 2163617.2820045534 2275411.139939342 1942309.6617305062 2185791.0650771507 0.8752684858351387 1.0664599352294726 1.169866487876085 1.1658794881119916 1.0901107931956917 0.9580937887463591 0.9898554882820813 1.0410012083469782 0.8886071925003269 1.0 21.059724072903485 2.7457721877049526 24.43329389331488 0.984442182009519 1.0836089772053554 0.2447413758828202 0.08443919529093522 633.3913953439303 2145975.785215328 0.027174599984949834 0.028259144144715257 556.8935497828949 -2.7457721877049526 0.09916679519583638 SIRDEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIRDEIK 7 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 0 113.71 0.015395 0.0 148610.0 115040.0 123140.0 105610.0 95085.0 119470.0 127740.0 112540.0 171860.0 129290.0 False True 147809.9002721231 118869.03685685151 140477.04164793275 118980.21517156264 107193.51113705043 111211.32010212976 121560.7281858119 120938.30626654062 129507.40580601532 121038.60150926221 1.2211798420424766 0.9820754319253707 1.1605970318252814 0.982993967940533 0.8856142569430437 0.9188086999965838 1.0043137203341674 0.9991713780441034 1.0699677969767774 1.0 16.88510769817393 7.999999999998927 0.7825747806561965 0.9846710581431741 49.94139089713667 0.4565399882344634 0.07180141258119403 432.8153385555492 1.608919054705802 0.025087659516500778 37501.07507324286 99999999.99975295 -7.999999999998927 48.9567198389935 SIRDT(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SIRDTPAK 8 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 S(0.001)IRDT(0.999)PAK;SIRDT(1)PAK;S(0.009)IRDT(0.991)PAK 74.53 0.065863 4348450000.0 7395000.0 3844220.0 3339900.0 3747640.0 2849940.0 4211940.0 4163000.0 4257740.0 8281400.0 5475000.0 True False 7355186.141661736 3972172.538819936 3810128.8890687875 4222090.839745809 3212862.9660821925 3920778.501640282 3961619.785795638 4575474.179165637 6240559.935074696 5125580.812616677 1.434995644504689 0.7749702295284052 0.7433555392766632 0.8237292502252785 0.6268290528506921 0.7649432610620908 0.7729113890944933 0.8926742834496052 1.2175322491674476 1.0 22.28928406428451 -0.30705908458123643 8.91108675364193 0.9999999997799037 0.8689084230252784 0.007282113160017145 0.23405422575920165 0.0 0.0 0.21900527996086727 0.05162003990992846 0.49310671356615854 0.30705908458123643 -0.13109157675462535 SIRPDNMSEYSK ddPTM_BT-474_Trastuzumab_2h_R1 4 SIRPDNMSEYSK 12 1 Q92769;Q92769-3;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;Q13547;Q5TEE2 Q92769;Q13547 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase 1 0 ;;; 113.07 0.0012652000000000002 2971310000.0 1001640.0 1014720.0 913030.0 816153.0 815260.0 958380.0 1024960.0 956420.0 1456580.0 1031660.0 False True 996247.2815326647 1048494.341788807 1041576.6878009748 919477.8861179467 919078.5285753983 892129.4463838547 975378.7690725669 1027792.9170023529 1097625.3761720338 965818.5755514362 1.03150561270149 1.0856017561995708 1.078439278522143 0.952019260545873 0.9516057692829613 0.9237029282383511 1.0098985397083218 1.064167684303993 1.1364715941038328 1.0 19.881392685512328 -0.451076311801343 6.6522389530665365 1.0000013534983134 1.0240798134428324 0.013569091417431123 0.06461875200052893 0.0 0.0 0.06784108533799714 0.015990297161851016 0.353935144111925 0.451076311801343 0.02407845994451896 SIS(ph)AAGRS(ph)QASPPKQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SISAAGRSQASPPKQAK 17 2 Q5VTL7 Q5VTL7 FNDC7 Fibronectin type III domain-containing protein 7 2 S(0.425)IS(0.525)AAGRS(0.525)QAS(0.525)PPKQAK 63.037 0.030557 1043200000.0 291020.0 592660.0 588340.0 746030.0 650380.0 554850.0 651860.0 513290.0 363110.0 628420.0 True False 289453.18065536144 612386.3298294651 671173.1580570466 840477.3215078199 733202.0378957225 516494.52547641 620327.0414529783 551594.3062338076 273626.405924719 588313.6975825704 0.49200482981230675 1.0409180210248565 1.140842310513851 1.4286210315371046 1.2462773532360547 0.8779236784707355 1.05441543177042 0.9375853536988076 0.46510289841809316 1.0 19.16622610104056 1.4678134547371928 5.047941015572001 0.7194547361489015 1.056450108746797 0.17478547432307634 0.26041648720170685 0.27033990328058627 14.632245442369735 0.16763518806527775 0.0674500501687365 29.363880956395214 -1.4678134547371928 0.33699537259789547 SIS(ph)ADDDLQESSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SISADDDLQESSR 13 0 P18615;P18615-3;A0A0A0MT02;E9PD43;A0A0A0MSN9;P18615-4;A0A0G2JI50;A2ABK4 P18615 NELFE Negative elongation factor E 1 SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR 375.22 1.907e-91 3182600000.0 1957390.0 1602630.0 1502533.0 1843930.0 1722110.0 1730020.0 1359394.0 1398823.0 2089240.0 1728576.0 True False 1946851.629726473 1655972.5707397084 1714076.586149042 2077371.3489375997 1941410.5007543336 1610427.7894290315 1293634.9188306227 1503210.275339267 1574374.796381706 1618256.7997716314 1.2030548118204805 1.0233064189647771 1.0592117310373315 1.2837093279822822 1.199692472188781 0.9951620717158707 0.799400267629452 0.9289071274419488 0.9728831645285729 1.0 20.626009135287124 2.5583679092872726 4.707244813559732 0.9138186991058821 1.146991631464641 0.6192798072969539 0.08506197774019908 0.15029095121876196 5.932588757115289 0.02972393683756593 0.0275332610153222 361.7161579922303 -2.5583679092872726 0.2331729323587588 SIS(ph)ADSFDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SISADSFDQR 10 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 S(0.03)IS(0.969)ADS(0.001)FDQR;SIS(1)ADSFDQR 171.49 4.2019e-06 951080000.0 788290.0 1035010.0 971990.0 1102300.0 1017110.0 1002290.0 916030.0 778210.0 903290.0 1034550.0 True False 784045.9342272525 1069459.6821732433 1108837.7433114678 1241851.0669786336 1146632.9296167141 933004.0514368768 871718.1293255768 836283.9818703096 680686.2829658769 968524.1332771837 0.8095264818794814 1.1042158325518694 1.144873633204685 1.2822097295362138 1.1838971175006923 0.96332555832128 0.900047917624886 0.8634622030951209 0.7028077665578106 1.0 19.88542847218174 2.4529803930270657 2.770727810595052 0.8556638806562621 1.1159140215412577 0.4173448027707921 0.13214076563391403 0.2573931395700698 4.040293782354217 0.05116939731793573 0.042933324396605826 283.77909085877053 -2.4529803930270657 0.26025014088499565 SIS(ph)EQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SISEQLR 7 0 H3BRG5;H3BUW7 H3BRG5 STARD13 1 S(0.044)IS(0.956)EQLR 78.098 0.044617 0.0 199730.0 234710.0 224190.0 195730.0 207210.0 226510.0 215090.0 178350.0 277160.0 226040.0 True False 198654.67587208893 242522.18046480857 255754.0033055871 220509.39793135112 233596.96527010776 210851.89684718693 204685.27497640727 191659.3826429494 208857.63175372512 211613.93367741973 0.9387599030927442 1.1460596013233457 1.208587727949208 1.0420362879671783 1.1038827227048222 0.9963989288560061 0.9672580222832851 0.9057030381331663 0.986974856164735 1.0 17.69107509898465 2.5857528904981004 2.357990313988687 0.9515531386975474 1.0969726398196655 0.40498665723663985 0.07008715777523947 0.26724947616500944 2.9363472967031976 0.0261047417392917 0.023525690260293004 385.2590864699432 -2.5857528904981004 0.1454195011221181 SIS(ph)ESSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 S(0.021)IS(0.973)ES(0.006)SR;S(0.003)IS(0.996)ES(0.001)SR 125.47 0.0042443 666440000.0 979070.0 1021080.0 893300.0 981650.0 864100.0 932450.0 1064540.0 1054570.0 1328600.0 1150170.0 True False 973798.795904903 1055066.0305441057 1019068.875297207 1105926.7893491588 974138.0130780385 867991.9262512003 1013044.1332622853 1133267.3683979537 1001184.332327896 1076765.1658899225 0.9043743489789436 0.9798478479493874 0.9464170160584358 1.0270826215251259 0.9046893825478975 0.8061107043092578 0.9408217923032705 1.0524740252544604 0.9298075049636653 1.0 20.038272212941184 1.9693748633299395 23.368098167535294 0.999105246700637 0.9296056518790426 0.19264738637186196 0.06038899333528999 495.1830945975623 377841.18390891026 0.0262344559325809 0.016960102014197034 93.1911912575404 -1.9693748633299395 -0.0694995948215944 SIS(ph)LGDSEGPIVATLAQPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SISLGDSEGPIVATLAQPLR 20 0 O43379-4;O43379 O43379-4 WDR62 WD repeat-containing protein 62 1 S(0.001)IS(0.999)LGDSEGPIVATLAQPLR;SIS(1)LGDSEGPIVATLAQPLR;S(0.001)IS(0.999)LGDSEGPIVATLAQPLR;S(0.004)IS(0.996)LGDSEGPIVATLAQPLR 349.47 4.829799999999997e-95 358710000.0 152424.0 164663.0 139617.0 150989.0 138404.0 168221.0 182293.0 160030.0 193837.0 184259.0 True False 151603.36611989833 170143.70841411458 159273.86002728104 170104.19191874913 156028.92901522128 156592.27821963964 173474.79116311405 171972.25121587445 146068.46863272777 172499.43286793365 0.8788629829059587 0.9863435814561626 0.9233297604475131 0.9861144995704518 0.90451850432852 0.9077843075549553 1.0056542695762203 0.9969438644330917 0.8467765151701018 1.0 17.396232093139417 2.251241937158589 24.99974253495111 0.9673793475147893 0.9345985176534407 0.07134188457991475 0.053044205662169976 609.7995974527456 1202146.0609126794 0.018094851245322834 0.015047134108690715 178.33719732290427 -2.251241937158589 -0.03278082986134856 SIS(ph)NEGLTLNNSHVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SISNEGLTLNNSHVSK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 S(0.039)IS(0.948)NEGLT(0.013)LNNSHVSK 68.23 0.031934 524820000.0 224410.0 266080.0 306290.0 322360.0 342710.0 328630.0 350800.0 360910.0 367540.0 385800.0 True False 223201.80149429463 274936.3119512436 349412.96967959474 363170.7429476847 386352.0870986855 305912.58161180926 333830.463813863 387842.93686384615 276964.69178367814 361177.913700002 0.6179829746723889 0.7612212749520683 0.9674261809093361 1.0055175833629129 1.0697002016009025 0.8469858482706207 0.9242826074108892 1.0738279450442598 0.7668372878794792 1.0 18.46235014807035 4.416912143489618 2.7115608384105307 0.9662221650185642 0.6260813186003595 0.6005527053012061 0.0903821780450623 0.18147128877807098 2.487405951391245 0.02240926407756366 0.09968913265779088 26116.329752022455 -4.416912143489618 -0.34014084641820463 SIS(ph)PSALQDLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SISPSALQDLLR 12 0 Q92793-2;Q92793 Q92793-2 CREBBP CREB-binding protein 1 SIS(1)PSALQDLLR;S(0.001)IS(0.997)PS(0.002)ALQDLLR 175.15 2.985e-05 85082000.0 82555.0 99726.0 92106.0 91861.0 74688.0 80994.0 94155.0 72181.0 81349.0 92673.0 True False 82110.53305272272 103045.31962435997 105073.7242002962 103490.59318127936 84199.07408954104 75395.07541936802 89600.3629429711 77567.51274769127 61301.62897075263 86758.529798653 0.9464260545134036 1.1877255165976754 1.2111054030554533 1.1928578483459518 0.9704990885040136 0.8690220499856671 1.0327556627678378 0.8940620931187745 0.7065775447442447 1.0 16.40471798500127 3.105341393315567 4.56028300444056 0.9062507472195651 1.142911661323655 0.5153941880922682 0.10700513442471853 0.1722549006658792 6.169357421068719 0.03163464473434124 0.038244867114144716 1274.5045590088669 -3.105341393315567 0.23666091410408985 SIS(ph)QDSLDELSMEDYWIELENIKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SISQDSLDELSMEDYWIELENIKK 24 1 Q8N392;Q8N392-2 Q8N392 ARHGAP18 Rho GTPase-activating protein 18 1 S(0.147)IS(0.852)QDS(0.001)LDELSMEDYWIELENIKK;S(0.001)IS(0.999)QDSLDELSMEDYWIELENIKK 204.14 6.856300000000001e-25 52216000.0 49506.0 44293.0 34853.0 46057.0 39960.0 45189.0 49526.0 48209.0 77634.0 58253.0 True False 49239.46519663365 45767.26572931609 39759.99945229329 51887.81147766939 45048.669138523765 42065.19079346396 47130.23817230718 51806.600380341755 58502.14094230299 54535.243667097544 0.9028925495814927 0.8392236405634437 0.7290698047486946 0.951454655532686 0.8260469030544139 0.771339558877646 0.86421614726812 0.9499655066471804 1.0727400669449796 1.0 15.73490125954012 1.5887652380968282 2.6239004543314994 1.0340662678065407 0.8360939887513867 0.6290168777546487 0.06101175819379927 0.14904210098021584 2.322978421997435 0.04247764139398658 0.01623245080740625 38.794060441595356 -1.5887652380968282 -0.1979722790551539 SIS(ph)REPS(ph)PALGPNLDGSGLLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SISREPSPALGPNLDGSGLLPR 22 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 S(0.456)IS(0.544)REPS(1)PALGPNLDGSGLLPR;S(0.459)IS(0.542)REPS(0.999)PALGPNLDGSGLLPR 149.84 3.4346e-08 832170000.0 355403.0 391006.0 319585.0 381967.0 345825.0 389921.0 368916.0 364815.0 398846.0 389627.0 True False 353489.5497369858 404020.39834188134 364579.79011738295 430323.98303604155 389863.76388463425 362966.679045304 351070.12368402176 392039.34779303375 300555.74756258563 364760.6712835431 0.9690999539317225 1.1076314694788465 0.9995041100085608 1.179743368499104 1.0688207215782248 0.9950817278849546 0.9624670402339535 1.0747851362744254 0.8239806843894955 1.0 18.476590660071807 2.70538210590928 4.881598445584522 0.982421804554941 1.0702996334235537 0.252600189390927 0.0793817765053514 0.30832984129284297 19.104842431495854 0.025098475181543633 0.02425049532667945 507.43697089361234 -2.70538210590928 0.08787782886861273 SIS(ph)SPNVNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SISSPNVNR 9 0 Q9NQT8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 S(0.01)IS(0.964)S(0.026)PNVNR;S(0.182)IS(0.752)S(0.066)PNVNR 121.58 0.0006399 1424670000.0 1164770.0 766580.0 729720.0 888470.0 729420.0 806810.0 743330.0 855750.0 1095320.0 949160.0 True False 1158499.0077381127 792095.1518926037 832458.2331600559 1000950.2109031196 822307.3133889395 751037.1237264532 707372.2881036445 919610.410410451 825393.0625360466 888583.7961832399 1.303758871942351 0.8914130049353964 0.9368370622283889 1.126455619832964 0.9254133565354447 0.8452068639473339 0.7960670576506588 1.0349169255173014 0.9288860162444799 1.0 19.761148307682962 4.743610147761037 24.911924997562775 0.9432615719301441 1.303759028845842 0.5953028641703905 0.08928366885746175 372.0065977627742 1835236.5982910714 0.022069120372323104 0.1857440631846936 55412.806662297626 -4.743610147761037 0.3604974569156979 SISASKAS(ph)PPGDLQNPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SISASKASPPGDLQNPK 17 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 SIS(0.017)AS(0.072)KAS(0.911)PPGDLQNPK;SIS(0.023)AS(0.141)KAS(0.836)PPGDLQNPK 92.565 0.0019848 986060000.0 1891910.0 1622400.0 1554170.0 1601720.0 1651870.0 2123400.0 2131500.0 1935160.0 3023800.0 2265800.0 True False 1881724.1667709607 1676400.603238491 1772983.6269121936 1804497.5877719484 1862225.8530994286 1976614.3559459483 2028391.2018792704 2079571.4657433704 2278625.006844112 2121194.704151027 0.887105819700832 0.7903096306802457 0.8358420014167445 0.8506987049518251 0.8779136820656704 0.9318401333351695 0.9562494182687961 0.9803774550604889 1.0742177520927265 1.0 21.01644562103701 2.370900379141067 0.8527802414696041 1.0289530169407275 0.8312050514015445 0.854502298245954 0.0311796774232066 0.20621038161897012 0.29428927225996365 0.022375805541504062 0.014642602602640904 234.90939109491896 -2.370900379141067 -0.19774796553918295 SISFIPPDGEFELMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SISFIPPDGEFELMR 15 0 A0A087WY71;Q96CW1-2;Q96CW1;E9PFW3;C9JJ47 A0A087WY71 AP2M1 AP-2 complex subunit mu 0 99.671 0.0073488 0.0 26768.0 35736.0 31670.0 32536.0 33730.0 33601.0 33359.0 33634.0 36554.0 36797.0 False True 26623.884062204397 36925.45115713183 36128.86071942525 36655.05426400876 38025.3155666268 31278.2419582461 31745.297726244724 36143.93986999137 27545.756498505114 34448.58395650335 0.7728585911055489 1.0719004068136997 1.0487763666873362 1.0640511177554182 1.103828117133628 0.9079688731977983 0.9215269273862767 1.0492140958719427 0.7996194134796912 1.0 15.072157060275305 2.7140556404398 24.813912158385087 0.9466840888255076 1.020498446893726 0.11032975700112369 0.1052248716697397 1693.4207227361476 1714767.9152098487 0.03356627724124108 0.0316581529560092 517.6731503541545 -2.7140556404398 0.07381435806821834 SISLLEPSLELEST(ph)SETSDMPEVFSSHESSHEEPLQPFPQLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SISLLEPSLELESTSETSDMPEVFSSHESSHEEPLQPFPQLAR 43 0 Q8TE77;Q8TE77-3 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 SIS(0.001)LLEPS(0.051)LELES(0.203)T(0.323)S(0.323)ET(0.047)S(0.047)DMPEVFS(0.001)S(0.001)HES(0.001)S(0.001)HEEPLQPFPQLAR;SISLLEPS(0.001)LELES(0.137)T(0.804)S(0.056)ET(0.002)S(0.001)DMPEVFSSHESSHEEPLQPFPQLAR 167.6 9.4154e-20 536094000.0 41572.0 48495.0 62479.0 78194.0 68754.0 71866.0 63468.0 32918.0 57120.0 56524.0 True False 41348.18097108342 50109.12675915342 71275.50012279677 88093.35238258849 77509.41436311461 66898.0725743673 60397.81036869507 35374.508314217055 43043.54136878624 52916.58992736893 0.7813840806415565 0.9469455009843054 1.346940538319391 1.6647586797165443 1.4647469625215979 1.2642173780696897 1.1413775991913793 0.6684956147546659 0.8134224338315448 1.0 15.691432473414924 1.9019286082076612 4.617702375077181 0.8030085363764451 1.261196104577546 0.36550690922132956 0.24474526787981588 0.2477364490112321 8.409288032230522 0.1265268175766642 0.07376053717310305 79.78635191526011 -1.9019286082076612 0.45818756820110085 SISLLEPSLELESTSETSDMPEVFSSHESSHEEPLQPFPQLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SISLLEPSLELESTSETSDMPEVFSSHESSHEEPLQPFPQLAR 43 0 Q8TE77;Q8TE77-3 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 131.99 1.8012999999999996e-09 58625000.0 4670.2 16806.0 14248.0 15733.0 18200.0 17458.0 16876.0 7309.6 12822.0 16069.0 False True 4645.0561621080005 17365.377550558474 16253.994554163903 17724.796186859177 20517.662120148467 16251.169551711566 16059.643407419459 7855.079469396714 9662.189905997497 15043.462662636959 0.3087757297822662 1.1543471034556687 1.0804689663991727 1.1782391185030674 1.3638922487644836 1.0802811770241008 1.0675496571215854 0.5221590032530318 0.6422849660799981 1.0 13.876849060344101 1.7532494534343648 24.999999999999282 0.6810215120218979 1.0599190620459598 0.19377658731147773 0.2844138791146535 6.435572021811558 10967.650707503146 0.1295342667058039 0.07183351549268495 56.656462337983534 -1.7532494534343648 0.3788975500240619 SISS(ph)PSVSSETMDKPVDLSTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 S(0.005)IS(0.12)S(0.619)PS(0.197)VS(0.025)S(0.025)ET(0.008)MDKPVDLSTR;SIS(0.017)S(0.888)PS(0.09)VS(0.003)S(0.002)ETMDKPVDLSTR;SIS(0.019)S(0.979)PS(0.001)VSSETMDKPVDLSTR 223.15 2.2172e-25 1046910000.0 524890.0 554850.0 467460.0 447368.0 484976.0 517070.0 468550.0 404010.0 542520.0 451525.0 True False 522064.05056076177 573317.8468360924 533274.3047648415 504004.7429303254 546734.8189220391 481326.1679518556 445884.4464651802 434159.2777212108 408823.2153955517 422708.2879299984 1.2350456933723923 1.3562966783632957 1.261565765308943 1.1923228318953374 1.2934092719104193 1.1386721805453799 1.0548277835967574 1.0270895795473702 0.9671521166465841 1.0 18.689302873624275 2.3699400845414607 1.1883787885918624 0.9886913833087626 1.2780062927183102 0.8875121520125562 0.04304953530396783 0.14279866693903914 0.3997577087144002 0.025868358091944557 0.016670083547853248 234.39054267851046 -2.3699400845414607 0.2893149094095476 SISSS(ph)NPDLAVAPGSVDDEVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SISSSNPDLAVAPGSVDDEVSR 22 0 K7ESB7;K7EKT0;K7EP20;Q96HP0 K7ESB7;Q96HP0 DOCK6 Dedicator of cytokinesis protein 6 1 SISS(0.223)S(0.777)NPDLAVAPGSVDDEVSR;SISS(0.006)S(0.993)NPDLAVAPGSVDDEVSR;SISS(0.038)S(0.962)NPDLAVAPGSVDDEVSR;SISS(0.089)S(0.911)NPDLAVAPGSVDDEVSR 467.25 2.4929999999999983e-224 1806630000.0 533613.0 665610.0 654171.0 571335.0 671538.0 682667.0 629881.0 655010.0 754740.0 688850.0 True False 530740.0868979774 687764.4264802588 746272.5906437361 643665.9524197025 757054.3837824325 635475.8371152637 599411.2496509113 703890.1722733856 568744.4399978594 644887.0032458447 0.8229970277376607 1.0664882731681729 1.1572144994202045 0.9981065662356406 1.1739333867360127 0.9854064881394526 0.9294826018107902 1.0914938101257525 0.881928829601551 1.0 19.298686868867048 SITHDIEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SITHDIEEK 9 0 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4;K7EL40;K7EK18;K7EIE4;K7EQD7;K7ER52;K7ELJ9;K7EJZ2;K7ENQ5;K7EN52;K7EKN4;K7EIR4 Q9UHD8 SEPT9 Septin-9 0 ;;; 169.41 5.849100000000001e-05 3165510000.0 5532010.0 5853580.0 5896530.0 5918020.0 5543030.0 6996320.0 7507190.0 5923550.0 8076000.0 6577380.0 False True 5502226.27282409 6048412.871736169 6726710.170442458 6667240.725211746 6248902.014387166 6512680.86596579 7144038.5394492345 6365595.380177427 6085778.012855705 6157605.97722168 0.8935658262607283 0.9822669547402936 1.09242296362028 1.0827650794603156 1.0148265474444467 1.0576644381042908 1.160197415339108 1.0337776408112413 0.9883350827201867 1.0 22.553938122173697 4.524028151352762 3.1617695518437854 1.0587929829824185 0.896558973548746 0.5148882053092552 0.0483389216090851 0.204438134825923 3.7415063915233784 0.012020650067064716 0.06208530582993317 33421.67035465606 -4.524028151352762 -0.1622340094336725 SITS(ph)PTTLYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SITSPTTLYDR 11 0 Q08999;F5H837 Q08999 RBL2 Retinoblastoma-like protein 2 1 SIT(0.02)S(0.959)PT(0.016)T(0.005)LYDR;SIT(0.134)S(0.521)PT(0.298)T(0.048)LYDR 171.26 1.5469e-05 721270000.0 1027180.0 961300.0 887420.0 902270.0 809530.0 980750.0 1054380.0 829750.0 1035020.0 1123110.0 True False 1021649.7770104265 993296.2893818795 1012361.0224070841 1016497.2894881731 912618.8470397682 912953.0609371706 1003375.6112772538 891670.1583851259 779953.1895574422 1051432.158257154 0.9716744622914192 0.9447079220292823 0.9628400790833391 0.9667740153326785 0.8679769206912201 0.8682947860853664 0.9542942009120604 0.848052964123859 0.741800774716922 1.0 20.003924335129955 3.239031501866124 24.999399882999416 0.8755057859824322 0.9603955428461063 0.2786222523062438 0.06392634210495689 16.063739220618636 852787.553718805 0.017725076026740193 0.02259985590156317 1733.9297650494336 -3.239031501866124 0.08488975686367406 SITSPT(ph)TLYDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SITSPTTLYDR 11 0 Q08999;F5H837 Q08999 RBL2 Retinoblastoma-like protein 2 1 SIT(0.006)S(0.28)PT(0.672)T(0.042)LYDR 229.0 3.1923000000000004e-11 463820000.0 1295300.0 1245300.0 1170600.0 1165800.0 989910.0 1251100.0 1325100.0 1109300.0 1360700.0 1355200.0 True False 1288326.2487213588 1286749.0577002517 1335410.3049624008 1313390.160467832 1115969.1708437458 1164614.4017726162 1260999.850626424 1192081.5989112647 1025373.7174458571 1268709.975754906 1.0154615895999248 1.0142184441598736 1.05257334653478 1.0352170200966069 0.8796093608231649 0.9179516390888698 0.9939228623753081 0.9396013444301595 0.8082018247202168 1.0 20.274930879353445 3.2531907059122416 24.9990152121685 0.9261682008154374 1.0299431049626593 0.4965063565226555 0.052316832840151956 206.76634545676055 353307.8945795407 0.014495982157569873 0.019544201557514393 1791.3923114337663 -3.2531907059122416 0.1037749041472219 SITST(ph)PLSGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 SITS(0.05)T(0.949)PLSGK;SITS(0.057)T(0.943)PLSGK;SITS(0.063)T(0.937)PLSGK 196.24 3.7679e-06 553110000.0 1282960.0 1088580.0 999070.0 964680.0 1057830.0 1513440.0 1491190.0 1417150.0 2145770.0 1647670.0 True False 1276052.6859102552 1124812.727239493 1139730.371927887 1086808.3890891306 1192538.3802503648 1408819.4550545493 1419055.4428010078 1522904.9291418884 1616973.7353448945 1542514.2899587434 0.8272550174847229 0.7292073302410558 0.7388783231034901 0.7045694138225447 0.7731133435932454 0.9133266798405025 0.9199625909714991 0.9872874041138514 1.0482714785015979 1.0 20.556852423987113 2.450544257107565 1.2979454423983192 1.0076617936880994 0.7436272655074861 0.8944529464012111 0.03872340433987911 0.13241104440495527 0.4496075675408534 0.02148236216710358 0.015285382083510405 282.19171380385137 -2.450544257107565 -0.26403452818061324 SIVDYKPNLDLLEQQHQLIQEALIFDNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIVDYKPNLDLLEQQHQLIQEALIFDNK 28 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ; 365.13 1.3955999999999993e-127 3098200000.0 3818600.0 2553400.0 2409500.0 2040560.0 2114200.0 3061500.0 2827500.0 2805100.0 3861900.0 3029300.0 False True 3798041.081886346 2638388.3754371027 2748736.65625056 2298894.686776672 2383430.8381548296 2849865.7109958148 2690723.022901071 3014430.8060091836 2910186.491808749 2835967.4804857904 1.3392399976447389 0.9303309694457981 0.9692412466519934 0.8106209618394074 0.8404295375582223 1.004900701649669 0.948784864923825 1.0629285514560354 1.0261706143789227 1.0 21.435409558879435 4.740849069089897 24.89548634129928 0.9554680384674091 1.3392401391930702 0.7034945812639012 0.07486926988788369 120.21361041883004 1307685.6231542702 0.019948174481705355 0.13315667457657115 55061.630676949724 -4.740849069089897 0.38377210072566104 SIVEEIEDLVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIVEEIEDLVAR 12 0 P04844-2;P04844;F2Z3K5;Q5JYR4;Q5JYR7 P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 0 164.64 0.00013202 109760000.0 69649.0 60006.0 63417.0 49555.0 66530.0 63408.0 75148.0 64409.0 94233.0 60642.0 False True 69274.01752273139 62003.263435607034 72345.56236955451 55828.65791901136 75002.20114579546 59024.75420637687 71512.8041467622 69215.5266422749 71010.53980750764 56771.775641771754 1.2202193209500511 1.0921494481138976 1.274322699118183 0.9833875598904738 1.3211177613865235 1.0396848352748618 1.2596541738980633 1.2191890399733636 1.2508070956875132 1.0 15.792886244810592 SIVEGIIEEEEEDEEGSESISKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SIVEGIIEEEEEDEEGSESISKR 23 1 Q9Y570;Q9Y570-4;Q9Y570-2 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 ;; 303.84 6.020399999999997e-62 470782000.0 250999.0 318246.0 265424.0 270508.0 277868.0 335499.0 315920.0 281322.0 402633.0 316283.0 False True 249647.6492726104 328838.6257262308 302793.3920932345 304754.28506419016 313252.84274733014 312306.743809696 300637.74266840186 302315.6761641703 303409.49215578625 296097.54815650015 0.8431263643583465 1.110575307946912 1.022613641951521 1.0292360979062027 1.0579379825926916 1.0547427553997462 1.015333441766637 1.0210002684803847 1.024694375366531 1.0 18.17571301872768 4.752561024247371 24.92919902805263 1.036718614473961 0.8431262283082122 0.7963305165661904 0.029465429897707302 984.7467219831602 1753413.8692762554 0.006756598871505288 0.14104971693236734 56566.7235400835 -4.752561024247371 -0.19359238616574892 SIVEHVASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SIVEHVASK 9 0 C9JBI3;P78330 C9JBI3 PSPH Phosphoserine phosphatase 0 70.399 0.052521000000000005 626090000.0 1561200.0 1385400.0 1195600.0 1349500.0 1258400.0 1724400.0 1513800.0 1681800.0 2379900.0 1928700.0 False True 1552794.6726656274 1431512.2015080159 1363930.0876585047 1520346.5616326474 1418649.7808788356 1605196.2868009731 1440571.7107224208 1807304.4560073582 1793405.5340261636 1805608.714756856 0.859984037502127 0.7928141849386144 0.7553851930993655 0.8420133051015861 0.7856905924769374 0.8890056154924626 0.7978316115495758 1.000939152118974 0.993241514271083 1.0 20.78405385614011 1.7121324510977434 5.673176807361805 0.9982652227969173 0.8165624564697396 0.8325712629475681 0.03702129964944991 0.05433862199100764 4.238127347268962 0.018850729009754964 0.009539768778124694 51.53858029380726 -1.7121324510977434 -0.18170276632717774 SIVIRPLEPQPAPHLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SIVIRPLEPQPAPHLAR 17 1 Q15029;Q15029-3;Q15029-2;K7EP67 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ; 145.55 2.8258000000000003e-07 2148900000.0 1630180.0 2072980.0 2009350.0 2132100.0 2060690.0 2079700.0 2075680.0 1881760.0 2294400.0 2068100.0 False True 1621403.2920100251 2141977.8861571285 2292249.014416706 2402023.6413908615 2323106.6568334466 1935935.2340872101 1975271.4285323794 2022186.4865836676 1728975.8633848582 1936112.0874105098 0.8374532149006941 1.106329483755229 1.1839443745648621 1.240642862058412 1.199882316700233 0.9999086554314445 1.0202257613990955 1.044457343008627 0.8930143428303834 1.0 20.884731046353167 2.712023375905282 22.99665887256185 1.000794408224673 1.1242040731951217 0.23329794210221444 0.10922529020359807 433.4234654133269 375594.8866416478 0.03689896956148308 0.0348033982305633 515.2563775155938 -2.712023375905282 0.1234096649704488 SIVTDLVSQMDPHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SIVTDLVSQMDPHGR 15 0 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;C9JMB8;A0A2R8YE78;A0A2R8YFD1;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8Y4G4 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 167.55 1.3045e-06 261930000.0 196670.0 239500.0 266030.0 221770.0 264700.0 336620.0 260190.0 215990.0 303070.0 270270.0 False True 195611.15057209105 247471.61271919293 303484.71162578784 249846.0592614097 298407.97600018105 313350.25171824667 247603.61567767645 232108.2705749969 228382.45942993773 253021.13721021163 0.7731020132502844 0.9780669530134626 1.1994441056268383 0.9874513331818439 1.1793796332211635 1.2384350776904192 0.9785886602508064 0.9173473534037585 0.9026220573824869 1.0 17.948898386133347 2.012566826620834 24.856521421301 0.9350965944037092 1.0678751352131075 0.1509034850849834 0.12877931322760477 367.9713306088348 727824.8361053056 0.05018876070987412 0.03704251714953105 102.93589065616604 -2.012566826620834 0.13277854080939833 SIYGEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SIYGEK 6 0 P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37;P62937-2 P62937;P62937-2 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D 0 ;;;; 113.25 0.061180999999999985 10570300000.0 6535380.0 6092530.0 5546970.0 4826670.0 4953290.0 6259920.0 6077310.0 5993920.0 7220000.0 5875800.0 False True 6500194.240228982 6295316.17803784 6327935.160872451 5437725.927110378 5584062.121050002 5827186.464666644 5783327.297721276 6441216.74690905 5440727.743043359 5500801.413474534 1.1816813136184805 1.144436183901694 1.150366044004389 0.9885334005678429 1.0151361049630907 1.0593340909185724 1.0513608587204546 1.1709596952783852 0.989079105767385 1.0 22.391210389964762 3.8491415288515607 7.484062862082442 1.0540374764594855 1.158911539006768 0.5103498387607543 0.05234687107772202 0.2677541568964599 16.197593428440396 0.014718445179542756 0.026709993543563442 7065.477681075394 -3.8491415288515607 0.10487406254728238 SIYGEKFEDENFILK ddPTM_BT-474_Trastuzumab_2h_R1 11 SIYGEKFEDENFILK 15 1 P62937;F8WE65;C9J5S7;P62937-2 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;;;;;;;;;; 263.99 3.8895e-25 29238572000.0 24121515.0 21200951.0 19280627.0 21313039.0 19430902.0 25540476.0 27573933.0 23866324.0 42308690.0 28094090.0 False True 23991647.443392277 21906611.83778947 21995171.691385876 24011267.552124858 21905312.19372073 23774923.009933557 26240076.518136747 25647350.287617665 31882280.256900437 26301101.12363948 0.9121917493343478 0.8329161480657463 0.8362833019039105 0.9129377298406524 0.8328667340103184 0.9039516215754408 0.9976797699375451 0.9751435944469176 1.2122032498572686 1.0 24.64861986495952 1.9167166028847424 1.3095333325808827 1.0868272765046718 0.8641545364584616 0.6620785103445885 0.06334340940289954 0.24896830355993327 0.7916271096280373 0.04493401069406786 0.01973622599553637 82.54990976715871 -1.9167166028847424 -0.22267274004621018 SIYNLNEDEELTHYGQSLADIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SIYNLNEDEELTHYGQSLADIEK 23 0 P78316;E9PFK5;P78316-2 P78316 NOP14 Nucleolar protein 14 0 ; 207.44 1.1938e-24 136544000.0 117267.0 114063.0 119406.0 118260.0 102094.0 144637.0 136401.0 117034.0 152137.0 128895.0 False True 116635.64750158855 117859.51800246032 136217.32690444237 133231.70387452914 115095.06574145255 134638.58462887534 129802.76252757893 125767.67136661045 114644.87488135544 120668.81074743863 0.9665765890881982 0.9767189820834631 1.1288528167361074 1.1041105240805331 0.9538095637848623 1.115769549686502 1.0756943879993794 1.0422550001743516 0.9500787665945315 1.0 16.880693305503826 1.290994134251494 8.216919636402695 0.9752789538889196 1.0485233201748902 0.17569338077638474 0.06076469465345203 0.3840897406441642 53.690498871935645 0.04183019194666647 0.015110121436065094 19.543130598924055 -1.290994134251494 0.07324436628597064 SIYVGNVDYGATAEELEAHFHGCGSVNR ddPTM_BT-474_Trastuzumab_2h_R1 3 SIYVGNVDYGATAEELEAHFHGCGSVNR 28 0 Q92843-2;Q86U42-2;Q86U42;B4DEH8;G3V4T2 Q92843-2 PABPN1 Polyadenylate-binding protein 2 0 ;; 187.26 4.6993e-18 445569000.0 67576.0 91877.0 76809.0 89847.0 85479.0 97717.0 101681.0 23451.5 92650.0 74678.0 False True 67212.17832439943 94935.07040418059 87623.03956420385 101221.62098777966 96364.24397627299 90962.05379107568 96762.30157085917 25201.57001430407 69817.64894639436 69911.98610494759 0.9613827623707418 1.3579226638143262 1.2533335762006463 1.4478435905944937 1.378365132291005 1.3010938303845212 1.3840588282759632 0.36047566974385503 0.9986506296872811 1.0 16.09325220012496 1.7581202162382512 24.999999999993044 0.7310124031070399 1.3073297574090852 0.5522771978537141 0.20908206286441308 5.206048965413644 6660.287963404044 0.09040497859872774 0.05013489603272741 57.29546075238645 -1.7581202162382512 0.5763173543020453 SIYYITGESK ddPTM_BT-474_Trastuzumab_2h_R1 4 SIYYITGESK 10 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 ;;; 192.91 1.4685e-06 2917040000.0 3291470.0 3173190.0 2929390.0 2916850.0 2804380.0 3272920.0 3449810.0 3361890.0 4501400.0 3410650.0 False True 3273749.0912366984 3278807.7109161406 3341822.6492856676 3286122.9109286354 3161501.1701374715 3046670.744024965 3282929.5107460157 3612771.3031315124 3392090.2856697147 3192979.396995629 1.0252960273771474 1.026880321871563 1.046615788510909 1.0291713482462956 0.9901414250001812 0.9541780153331617 1.0281712164616605 1.1314734152468626 1.062358964439744 1.0 21.60647181313474 1.978991891724855 24.038468722425883 1.0793698106786427 1.0121669562504911 0.24504636306040917 0.03875085762873056 491.1065270032293 561946.1840285931 0.016000492046493463 0.01046092183485986 95.27783754915394 -1.978991891724855 -0.06720285442815155 SKADVER ddPTM_BT-474_Trastuzumab_2h_R1 3 SKADVER 7 1 P49792;O14715;Q99666;F8W705;Q99666-2;F8WBP7;C9J1W9;C9JF75 P49792 RANBP2;RGPD8;RGPD5;RGPD6 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 0 ;; 84.476 0.019624000000000003 391210000.0 661160.0 683580.0 612180.0 623560.0 578580.0 485490.0 704250.0 680660.0 933990.0 727860.0 False True 657600.3880217819 706332.5470671635 698369.622836052 702502.632064953 652258.733487664 451929.2190205319 670182.7370037428 731454.305521446 703820.6793248012 681407.3516477025 0.965062068132442 1.0365789939882357 1.0248929970410992 1.0309583986234376 0.9572229179953011 0.6632291505627692 0.9835273062187874 1.0734464542431565 1.032892700119688 1.0 19.378157987072814 -0.9827415389357075 5.656803501027947 1.0000000403276643 0.9770895142756072 0.004339481330475903 0.10964205282448117 5.8988357492680985e-08 1.0576829888483212e-08 0.11310384941222895 0.0266587862893145 0.10405392362499538 0.9827415389357075 -0.022910526052057123 SKAECEILMMVGLPAAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKAECEILMMVGLPAAGK 18 1 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;M0QYZ0 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 90.793 0.0023994 0.0 334940.0 285070.0 284580.0 239150.0 294360.0 337910.0 273430.0 294940.0 483600.0 364170.0 False True 333136.72025533253 294558.38262154564 324646.3903862971 269426.3654793983 331845.00119158754 314551.0770545796 260203.14629596492 316949.92047497374 364423.2599080012 340928.3588183772 0.9771458185817992 0.8639890903838415 0.9522422584952693 0.7902726731598465 0.9733569901363687 0.9226310129928219 0.7632194259163492 0.9296672226783649 1.0689144815381593 1.0 18.379109083961577 1.3706398517535945 5.60754626855035 1.0312638216603847 0.8900581628974793 0.39161795403617194 0.06985270847421614 0.19438440826324152 8.233429493854421 0.04635030628142149 0.016592520388474395 23.47685143867197 -1.3706398517535945 -0.14120565876290536 SKAELMEISEDKTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKAELMEISEDKTK 14 2 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 SSB Lupus La protein 0 ; 203.99 8.0256e-09 3567400000.0 5625100.0 4257700.0 3992800.0 3777000.0 3665000.0 5555900.0 5804000.0 5178200.0 9324600.0 5779700.0 False True 5594815.086607359 4399414.970666 4554951.533960255 4255167.81273547 4131716.025843083 5171833.710181823 5523238.346566878 5564623.578366807 7026677.27323852 5410834.597749882 1.034002238570365 0.813075116451631 0.8418205087722419 0.7864161684973698 0.7636005039890286 0.9558292009762323 1.0207738282858876 1.0284224139249938 1.2986309498650341 1.0 22.367419709987878 2.103858910846345 1.483659894145415 1.122875302892498 0.8445869257420485 0.5536295018004804 0.10221582903464405 0.29578581329924397 1.2361785502094496 0.06345844768764707 0.033196505801708145 127.01614011171547 -2.103858910846345 -0.2782883771504495 SKAEMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKAEMR 6 1 P22059 P22059 OSBP Oxysterol-binding protein 1 0 77.741 0.065319 73013000.0 180290.0 226860.0 248760.0 195970.0 161130.0 139410.0 224550.0 187430.0 321990.0 223970.0 False True 179319.33867210228 234410.89796023432 283783.2457393187 220779.78190674327 181648.9504076659 129772.91483584094 213687.65863569826 201416.9783502551 242639.8789449487 209676.04284963565 0.8552209219281052 1.1179670065041083 1.3534366725092544 1.0529566416181864 0.8663314508369049 0.6189210415846345 1.0191324470432679 0.9606103568765683 1.1572131734618452 1.0 17.677802505940512 3.4337416696375347 6.88754449775886 0.9297036337785441 1.1249089657579117 0.17307580732226935 0.17068760570448316 0.3151818492280939 38.09937141258173 0.049338851395338466 0.06741175927343997 2714.8239361449278 -3.4337416696375347 0.1952053319793675 SKAEVACIAVYETDVFVVGTER ddPTM_BT-474_Trastuzumab_2h_R1 1 SKAEVACIAVYETDVFVVGTER 22 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5;C9J6M0;Q86UP8-4;A0A087WW90;A0A0D9SF80;A0A494C0I1;A0A494C1N8;Q86UP8-3;Q86UP8;Q6EKJ0;Q86UP8-2;Q6EKJ0-2;Q86UP8-5 A0A494C1K3;A0A087WW90 GTF2I;GTF2IRD2;GTF2IRD2B General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B 0 159.73 1.7606e-11 70650000.0 118770.0 128260.0 111090.0 103090.0 111600.0 139680.0 126930.0 113730.0 166780.0 152830.0 False True 118130.55551658753 132529.05656519264 126730.50638841033 116141.18342994408 125811.59849497626 130024.25037135232 120789.91098031246 122217.11010923819 125679.30373750292 143076.25855565426 0.82564750231176 0.9262826544603909 0.8857549649938203 0.8117432242244936 0.8793324606404749 0.9087758631930892 0.844234481665085 0.8542095756697313 0.8784078155679181 1.0 17.126424771898673 0.9442821626909955 18.893985797607066 1.0000000004256089 0.8676504188220713 0.5838587088717992 0.03348448568755625 479.9078451867079 162738.76886942686 0.031591648659292586 0.007897912162489876 8.79593806494281 -0.9442821626909955 -0.1323495816035376 SKCEELSGLHGQLQEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKCEELSGLHGQLQEAR 17 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ; 157.11 2.2737e-08 312800000.0 266350.0 296650.0 326410.0 341860.0 269780.0 358220.0 348540.0 297780.0 398100.0 365210.0 False True 264916.00119426666 306523.815921288 372365.69079341914 385139.4409483047 304134.8838886624 333457.094559177 331679.7886479014 320001.8556962011 299993.5892666981 341901.9851279882 0.7748302517023922 0.8965254056847412 1.0891006984180776 1.1264615524362367 0.889538221823462 0.9753002587403816 0.9701019680354876 0.9359461764353635 0.8774257018554542 1.0 18.38322327370999 4.55073701769713 4.095588712537173 0.9800723714194993 0.7860584827996578 0.4272974386128259 0.07436865799533707 0.229498832808672 6.949332872248139 0.019111381361608157 0.08936494487861216 35541.60350774954 -4.55073701769713 -0.19401388861984148 SKDAS(ph)PINR ddPTM_BT-474_Trastuzumab_2h_R1 5 SKDASPINR 9 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 S(0.001)KDAS(0.999)PINR;SKDAS(1)PINR;SKDAS(1)PINR;SKDAS(1)PINR;SKDAS(1)PINR 127.17 0.00027424 4090410000.0 3362880.0 3180710.0 2856250.0 2644620.0 2887160.0 3228280.0 3215440.0 3247810.0 3785690.0 3165510.0 True False 3344774.6277310904 3286578.0095702014 3258385.1730299485 2979428.6208410044 3254822.7124619647 3005116.602153709 3059896.883026355 3490178.0742450105 2852757.4251470664 2963484.4416705375 1.1286627932642754 1.1090248908874087 1.0995114829059718 1.0053802135574834 1.098309364036073 1.0140483816610502 1.032533473096781 1.1777278210637652 0.9626362079157555 1.0 21.49886305268302 7.999928156274933 0.009970488716952447 4.542707213093202e-09 2.2820717937350596 0.21030168307739183 0.05817645479376105 24653.0754777875 18.99881345300752 1873.885178592904 2518.766637941365 99983458.73918101 -7.999928156274933 2.2820717891923525 SKDAS(ph)PINRWS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 S(0.311)KDAS(0.689)PINRWS(0.599)PT(0.401)R;S(0.073)KDAS(0.927)PINRWS(0.605)PT(0.395)R 86.74799999999998 0.035496 2531400000.0 1502600.0 1629920.0 1588170.0 1780260.0 1894810.0 2151790.0 2255700.0 1897190.0 2804500.0 2190370.0 True False 1494510.1685545552 1684170.9018925529 1811770.5313788943 2005640.7334658299 2136102.8220812376 2003041.822068818 2146583.1733891973 2038767.9515356182 2113368.553374665 2050578.7113298955 0.7288236049155586 0.8213149256778784 0.8835410810462755 0.9780852216909434 1.0417073045178917 0.9768178178197082 1.0468182282049727 0.9942402797176132 1.03062054711572 1.0 20.967599691807077 4.180509895594759 1.1589064339540063 1.0162660345140828 0.7105412904172751 0.9465546422359002 0.02313490200420658 0.13606250655873217 0.27880932765701383 0.0067338185333767385 0.040335931012990545 15153.39330992352 -4.180509895594759 -0.3057247440968077 SKDDQVTVIGAGVTLHEALAAAELLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKDDQVTVIGAGVTLHEALAAAELLK 26 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ;; 260.97 5.027899999999998e-53 2479640000.0 1773460.0 1472040.0 1716030.0 1125320.0 618673.0 1320740.0 1851900.0 1320670.0 3241180.0 1462710.0 False True 1763911.888409931 1521035.9615330289 1957632.1079998529 1267785.3966183402 697457.3393878358 1229440.3524875431 1762316.5220549942 1419225.101626376 2442434.6185868764 1369358.595510967 1.288130000565512 1.1107652637660366 1.4295978529052686 0.9258242514228163 0.5093314064513424 0.8978220580919387 1.2869649541268608 1.0364159587407429 1.7836340507107988 1.0 20.38506886560641 -0.10880581274177897 8.519221602182382 1.0000152948803798 1.1166745985929274 0.011717866185925851 0.3257014040882118 0.0 0.0 0.31768583102481956 0.0748792684681779 0.7783845143997978 0.10880581274177897 0.11665930371254762 SKDDQVTVIGAGVTLHEALAAAELLKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKDDQVTVIGAGVTLHEALAAAELLKK 27 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ;; 254.85 4.588199999999998e-53 941556000.0 791351.0 709484.0 880438.0 636812.0 481952.0 779783.0 943238.0 718166.0 1848278.0 851527.0 False True 787090.4541433617 733098.7460478656 1004396.0174957168 717432.3339061954 543325.730446692 725878.4366217382 897609.9744209235 771759.1936930559 1392794.6525563279 797181.8178310575 0.9873412018914932 0.9196129786833991 1.2599334242575175 0.899960733999376 0.6815581066875714 0.910555685523136 1.125978985400228 0.9681093778491204 1.747148042520327 1.0 19.60454927991721 1.2940887582252407 24.935041346155483 1.3735747672740901 0.9709963529838782 0.35187662585351653 0.2195469871107577 74.98318073276121 33671.07647675523 0.1391331983736427 0.05080694071851905 19.682885143530093 -1.2940887582252407 -0.4025784142902119 SKDEEEDEES(ph)DDADDTPILKPVSLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDEEEDEESDDADDTPILKPVSLLR 26 2 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ITI3 A0A3B3IS53 KAT6A Histone acetyltransferase KAT6A 1 SKDEEEDEES(1)DDADDTPILKPVSLLR 167.3 5.5181e-12 563970000.0 487100.0 376630.0 299870.0 255720.0 304510.0 492630.0 410990.0 407140.0 691160.0 431140.0 True False 484477.50772189803 389165.90187235724 342089.08948323526 288094.12578043755 343287.54352782434 458575.6476262842 391108.8435657337 437522.85421502887 520832.87906950846 403624.27608247526 1.2003180592212483 0.9641786308037537 0.8475433955645767 0.7137680829722178 0.8505126273863619 1.1361448624378092 0.96899236924445 1.083985478925026 1.2903903702835833 1.0 18.62265342274269 2.7375576250125473 24.99914305065376 1.0889995304969835 0.9030251363152635 0.2883367595851941 0.1410338933151084 124.41047161435957 3100838.7544342102 0.046820267528307785 0.0465010145786041 546.4590528079781 -2.7375576250125473 -0.18597439418172002 SKDEYEKS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 6 SKDEYEKSR 9 2 Q13247;Q13247-3;A0A590UJP7 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 SKDEYEKS(1)R;SKDEYEKS(1)R;SKDEYEKS(1)R;SKDEYEKS(1)R;SKDEYEKS(1)R;SKDEYEKS(1)R 100.69 0.0035343 9299130000.0 6288020.0 4688190.0 3908100.0 3632280.0 4012200.0 4820770.0 5807110.0 5503510.0 8298280.0 5278500.0 True False 6254165.998984702 4844233.570079294 4458326.510185854 4092126.2755739437 4523129.887827451 4487521.516771947 5526197.903985519 5914209.862457523 6253280.085255105 4941621.6108487835 1.26561005505852 0.9802922909848693 0.9021990879265404 0.828093811673102 0.9153128758174078 0.9081070689265422 1.1182964498644257 1.1968156059285335 1.2654307791447894 1.0 22.23655311437943 2.1145422428019547 4.717418086847827 1.1717334989258412 0.9561570279999211 0.3217416577827089 0.12608929573121838 0.22643028120419992 8.384047756947623 0.05002881040587654 0.03619556074401071 130.1793931852747 -2.1145422428019547 -0.21557647092592014 SKDFVQVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDFVQVMR 9 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 58.699 0.097693 637960000.0 989220.0 1303800.0 1316500.0 1233800.0 1048300.0 1260000.0 1449100.0 1243900.0 1835100.0 1517500.0 False True 983894.1494326749 1347196.1948362566 1501851.7567768674 1389998.953495637 1181794.7912391012 1172899.165720962 1379001.496900422 1336726.134396213 1382864.1940801751 1420651.8508028854 0.6925652818293407 0.9482944002606162 1.0571567945574363 0.9784233573553403 0.8318679841026544 0.8256063334997203 0.9706822231788003 0.9409245014116292 0.9734011843215814 1.0 20.438121616051653 4.739246362123098 23.97397150541419 0.9435429299319178 0.6925651465870821 0.5624794145397305 0.06734239377100018 25.854078802795954 903526.7939691633 0.017253021639691238 0.10308633100466975 54858.80740919083 -4.739246362123098 -0.25097778334483567 SKDGVCVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKDGVCVR 8 1 E9PLK3;P55786;P55786-2 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 ;; 109.48 0.0032928 619330000.0 471839.0 618720.0 540470.0 574740.0 647840.0 789040.0 789540.0 712580.0 971240.0 817550.0 False True 469298.671250241 639313.7211758618 616563.4781505447 647502.0250705797 730338.5839514816 734495.522000372 751346.9338643027 765756.3380079231 731890.9159492289 765373.2590602299 0.6131631405916551 0.8352966524605898 0.8055722758168967 0.845995097693406 0.9542253734448916 0.9596566293709144 0.9816738760730294 1.0005005125841 0.9562535759975302 1.0 19.545803970824547 5.672837327930714 0.41451481979480564 1.0016341944497498 6.18059136364696e-16 0.9057396494174111 0.03560654750768897 3.1257637446698245 0.23274257826239517 0.02521008307234159 1.8121804498603284 470800.9472059107 -5.672837327930714 -1.001634194449749 SKDILVDLGHLEGADAGEEDLEQQFHYHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDILVDLGHLEGADAGEEDLEQQFHYHLR 30 1 Q9NPA3 Q9NPA3 MID1IP1 Mid1-interacting protein 1 0 126.36 4.4595e-06 85455000.0 97051.0 127070.0 109950.0 117040.0 118550.0 113090.0 133940.0 28841.0 160530.0 83450.0 False True 96528.48819937976 131299.44813456276 125430.00429746784 131857.2519996184 133646.63979909883 105272.35448522522 127460.81049951195 30993.26187163055 120969.53249179378 78124.14955486057 1.2355780990818368 1.6806512311837873 1.605521532229775 1.6877911983800247 1.7106956115438938 1.3475008058974205 1.6315161345853249 0.39671807050989233 1.5484268716019263 1.0 16.253480959383847 1.7702201105940334 24.999999999995943 0.9246470013799796 1.56653585412266 0.43612448707321827 0.29753108416418245 21.505187435658964 16990.29473649594 0.12811132730887145 0.07106418703284136 58.914217072384176 -1.7702201105940334 0.6418888527426804 SKDKEEGKEER ddPTM_BT-474_Trastuzumab_2h_R1 2 SKDKEEGKEER 11 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 0 ; 59.57 0.043435 224300000.0 381350.0 236092.0 219015.0 213067.0 198190.0 275810.0 369200.0 303020.0 616560.0 304590.0 False True 379296.8539719679 243950.17949937232 249850.4082874939 240041.26035374822 223428.32173583636 256743.90388690392 351340.3855190368 325632.891104382 464617.0494807217 285150.8054273817 1.3301623097416149 0.8555128544481639 0.8762044628035335 0.841804602283961 0.7835444174915228 0.900379374703495 1.2321213155700215 1.141967285052294 1.6293730918429545 1.0 18.121365582138115 2.2266044669701013 7.6184602320092365 1.2496770888141238 0.9142559657596374 0.36762419843364147 0.2046393651606295 0.15032445964616095 48.81725163659172 0.07333195540745518 0.0562211067901825 168.50176990749665 -2.2266044669701013 -0.33542112305448635 SKDLAEVGEGGGHSQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDLAEVGEGGGHSQAR 17 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 120.56 3.9294e-05 387080000.0 387440.0 360420.0 400440.0 392800.0 352340.0 568070.0 508100.0 381490.0 620510.0 463210.0 False True 385354.0660886311 372416.36182150914 456818.47131312406 442528.4397253086 397208.41051720333 528800.6579929428 483521.2618695083 409958.72096696845 467593.62490801036 433647.5412259671 0.8886342696633186 0.8587996619758271 1.0534326333815944 1.0204795315435993 0.9159706276536319 1.2194250116072787 1.115009808432311 0.9453731014085128 1.0782803554842582 1.0 18.726163403940276 4.23800545989774 24.99999726791487 1.0411912056637953 0.8737169182006661 0.4104848605833068 0.08134739465801943 13.69004027475216 616631.8686181314 0.02065076006197337 0.04939627009369832 17298.38106394013 -4.23800545989774 -0.1674742874631292 SKDPGSAER ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDPGSAER 9 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;A0A087WYS3;A0A087WV57;Q5TH12;Q5TH08;Q5TH07 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 0 84.054 0.014366 97251000.0 95883.0 98081.0 89680.0 82304.0 72100.0 81400.0 102180.0 94118.0 113920.0 123750.0 False True 95366.77658160268 101345.56679378348 102306.1644874663 92723.67796118087 81281.5076298188 75773.00959498924 97237.16303449395 101141.56308152007 85845.94244979204 115852.1690522947 0.8231764442714483 0.8747835074890737 0.8830750889203132 0.8003620365478542 0.7015967702178196 0.6540491232476272 0.8393210401662994 0.8730226107019681 0.7409955562510177 1.0 16.821925529875582 -0.4728735069316077 16.71354994037461 0.9999999999999979 0.8035153096352033 0.39885382905632716 0.07386134456227489 0.0 0.0 0.0783466473629512 0.018466481877857984 0.3366095963647806 0.4728735069316077 -0.19648469036479455 SKDQDDQKPGPSER ddPTM_BT-474_Trastuzumab_2h_R1 2 SKDQDDQKPGPSER 14 2 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 0 ; 157.37 2.9901e-06 658900000.0 355017.0 266338.0 242753.0 216502.0 229607.0 331254.0 345896.0 333954.0 492796.0 309888.0 False True 353105.6279180964 275202.8993252792 276930.5123530989 243911.1310015499 258846.09046268804 308355.19066804106 329163.6890289619 358875.34326405165 371353.0289280877 290110.68253153516 1.2171410746990112 0.948613463398972 0.9545684768881146 0.8407519808410938 0.8922321929133077 1.0628880949067525 1.1346141622798795 1.2370290543335707 1.280039141225768 1.0 18.14624389424546 2.3269082678164104 2.5522978413751307 1.1934790878234185 0.9624207054999808 0.3694242174651766 0.115964247536302 0.26039654687199204 3.476801912612306 0.04739325171797921 0.035970784822607155 212.27960352054976 -2.3269082678164104 -0.23105838232343767 SKDVVDYSEENFAIVFAAMGVNMETAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKDVVDYSEENFAIVFAAMGVNMETAR 27 1 P21281 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform 0 ; 174.31 1.8966e-12 105595000.0 233400.0 279710.0 245810.0 253540.0 210926.0 292210.0 301640.0 275130.0 352660.0 280600.0 False True 232143.400333178 289019.9782617345 280417.91138117854 285638.138003958 237786.17584365036 272010.2104883511 287048.52082329977 295661.597681832 265751.66840189364 262691.8677662537 0.8837098853008343 1.100224307358109 1.0674784635156565 1.0873505161496744 0.9051904722655338 1.0354725207191757 1.092719478772441 1.125507234753514 1.0116478696567897 1.0 18.003012013641147 2.418092259459398 7.033907155250132 1.0741137775413516 1.0165511634042455 0.06348134338355305 0.0755312957417537 0.4976690221599284 48.0921888374528 0.026268185906235114 0.021964594091125472 261.87392616781545 -2.418092259459398 -0.05756261413710617 SKDYDVYS(ph)DNDICSQESEDNFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKDYDVYSDNDICSQESEDNFAK 23 1 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 S(0.002)KDYDVYS(0.998)DNDICSQESEDNFAK 275.73 5.9049e-52 635510000.0 468600.0 335440.0 271220.0 265830.0 305250.0 479050.0 330730.0 431960.0 680740.0 477850.0 True False 466077.109666354 346604.91762223816 309405.4185134991 299484.05074383615 344121.77814150054 445934.4010624031 314731.3263887083 464195.0486484356 512980.7484486609 447353.20389203297 1.0418548601226516 0.7747902878681293 0.6916356378396988 0.6694577084466696 0.7692395519862043 0.9968284505011117 0.703541013343603 1.0376477570963534 1.146701854341624 1.0 18.77105482327036 1.6276987222404027 5.537333882130204 1.078578105084445 0.8022772462232804 0.4794231117366513 0.12167922154294483 0.11784975912534204 7.730730099839725 0.0666413010060411 0.03182461747538288 42.432509999756896 -1.6276987222404027 -0.2763008588611645 SKEDS(ph)RR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKEDSRR 7 2 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 S(0.09)KEDS(0.91)RR 72.848 0.039766 2468400000.0 2464700.0 1653500.0 1318900.0 1398400.0 1459500.0 1600800.0 1923900.0 1492500.0 3140800.0 2285800.0 True False 2451430.3290539146 1708535.747938141 1504589.6559156918 1575437.2966188192 1645358.67386575 1490140.4638778714 1830833.606988285 1603877.9287614361 2366791.9245637897 2139918.2870281655 1.145571933243472 0.7984116768827133 0.7031061256106217 0.73621376394083 0.7688885523525104 0.6963539088902876 0.855562391370969 0.7495042864411607 1.106019766694315 1.0 21.029124277562758 1.2394438458491548 24.999861940670034 1.053009960191267 0.7959816120074729 0.3807034729507599 0.12506287404338906 21.894608589420198 619889.3571592806 0.09363162407162275 0.029678817081669584 17.355768387797198 -1.2394438458491548 -0.25702834818379416 SKEEVNDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKEEVNDKR 9 2 R4GMX3;P35226;Q5T8Z2 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 0 ; 115.78 0.00079882 396340000.0 740220.0 668640.0 572030.0 548880.0 571620.0 706080.0 787370.0 715660.0 1100550.0 815560.0 False True 736234.7377661737 690895.2781985844 652566.8518261076 618368.1517220658 644412.4187428158 657270.3515335377 749281.905054507 769066.1832478446 829334.1991144549 763510.2625639556 0.9642761516967858 0.9048932438425625 0.8546929672362396 0.8099015586843772 0.8440127793158988 0.8608533293663244 0.9813645497551425 1.0072768120565028 1.0862122485812502 1.0 19.542288023273766 2.057411087220233 2.402660403219609 1.0323630990201136 0.8688729451741659 0.7230928011093988 0.044641660754819505 0.1651553236349116 1.8352219123445979 0.024385924673189768 0.014177509799451753 114.13296171517764 -2.057411087220233 -0.16349015384594767 SKEGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_BT-474_Trastuzumab_2h_R1 14 SKEGHSLEMENENLVENGADSDEDDNSFLK 30 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;S(0.002)KEGHS(0.002)LEMENENLVENGADS(0.849)DEDDNS(0.147)FLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(0.998)DEDDNS(0.002)FLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK 426.51 1.3716999999999988e-196 13027885000.0 3095640.0 2989469.0 2848084.0 2905300.0 2936712.0 4186205.0 4139464.0 3692827.0 5649446.0 4264686.0 True False 3078973.41819794 3088971.6684928266 3249069.4712100923 3273110.682112878 3310684.86594425 3896822.5016166107 3939222.312031892 3968404.5025355485 4257215.731997964 3992510.088298623 0.7711873859058977 0.7736916376357029 0.8137911738113248 0.8198127518088975 0.8292239199713763 0.9760332260743795 0.9866530640904557 0.9939622980956958 1.0663005572547328 1.0 21.928864622375837 2.745831506837952 1.3104770344805623 1.0180923862572238 0.7855325421600204 0.9456382687032944 0.024575387566551348 0.09072262410142677 0.3191156661921484 0.011123653510094526 0.01057771488815506 556.9696195928256 -2.745831506837952 -0.23255984409720332 SKEGLTER ddPTM_BT-474_Trastuzumab_2h_R1 5 SKEGLTER 8 1 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 ;;;; 133.23 0.00084675 1840800000.0 2676350.0 2991510.0 2834840.0 2750620.0 2788530.0 3173350.0 3155310.0 2992260.0 3891610.0 3362380.0 False True 2661940.8289704416 3091080.601944017 3233960.8311290056 3098848.209972578 3143632.7665877766 2953983.7837623945 3002675.6008452675 3215557.6355884043 2932574.8604023517 3147790.029721652 0.8456538726650162 0.9819843676858429 1.0273750156756718 0.9844520062370863 0.9986793073570275 0.9384310121928955 0.9538995843095619 1.021528629682058 0.9316297569764108 1.0 21.585907879806747 4.7380647200543615 7.809263339969205 0.9838273685936988 0.8444122878665263 0.6378986269232777 0.030792454302897777 0.057649159422445986 39.951561358983355 0.007262754645446669 0.04283706841620012 54709.748716469694 -4.7380647200543615 -0.13941508072717246 SKEIEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKEIEAK 7 1 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;; 98.033 0.010543 1215100000.0 1600340.0 1370630.0 1213150.0 1142660.0 1181410.0 1235820.0 1721970.0 1556490.0 2489380.0 1707770.0 False True 1591723.9472544899 1416250.5909866674 1383950.9751111716 1287320.6388404306 1331855.560734317 1150390.6722073646 1638671.7325357953 1672643.1874960735 1875905.654983 1598778.6565045426 0.9955874384353638 0.885832810705053 0.8656301292743955 0.8051900327809843 0.8330456222415381 0.7195434261816441 1.0249522195389273 1.0462005986200886 1.1733366888224217 1.0 20.608538787525053 2.086419942426353 7.020871095724292 1.0678437339386524 0.8505519290412374 0.6486848592372372 0.07637875443840508 0.13846628127917388 9.43537958859384 0.02954047970016582 0.021738291894408877 122.0168874843173 -2.086419942426353 -0.21729180489741495 SKEINQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKEINQTR 8 1 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;H7C0P8 Q92878-2 RAD50 DNA repair protein RAD50 0 ; 105.98 0.0039075 171988000.0 380150.0 360230.0 332110.0 346090.0 316980.0 368310.0 380840.0 371150.0 537140.0 422120.0 False True 378103.31463863567 372220.0377863663 378868.2012481318 389904.9585145928 357345.5241123436 342849.5966084828 362417.31424991885 398847.09766151226 404769.0443072452 395179.9402048857 0.9567877216708003 0.9419001318573621 0.9587232617417351 0.9866516967243883 0.9042602818530557 0.8675784414328532 0.9170944103640973 1.0092797156017719 1.0242651590497938 1.0 18.592150190333495 1.6778346528173904 5.620875972084818 1.0135837283488125 0.9331013059748403 0.5623201264366556 0.03144109246755195 0.11678708434933315 8.132070696585929 0.0185570110652469 0.009183459796202513 47.62496316871082 -1.6778346528173904 -0.08048242237397218 SKEITVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKEITVR 7 1 P17844;P17844-2;J3KTA4;J3QRQ7;J3KRX8;J3QR02;J3KTQ4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;; 105.57 0.007202600000000002 2109680000.0 4669220.0 6782230.0 4714390.0 5807360.0 7476000.0 7296510.0 8971450.0 9127340.0 12629210.0 10580230.0 False True 4644081.438319111 7007972.425605392 5378135.133787532 6542571.180557959 8428024.286276368 6792119.437837041 8537466.689232826 9808468.458493415 9516910.41824386 9904990.663209375 0.4688627779901768 0.7075193368566687 0.5429722567799908 0.6605327963467319 0.85088664622179 0.685726990441835 0.8619358644066153 0.9902551947802962 0.9608197263217035 1.0 23.239724184504773 2.6918739312178737 0.5073938048596159 1.0303117574020098 0.529240126278657 0.8021693727437178 0.07930922037055338 0.4261389359057758 0.22844008703227178 0.06991926337993497 0.08674078823381724 491.89672515726556 -2.6918739312178737 -0.5010716311233527 SKENMAQESSIQEQGVTSNTS(ph)DSESSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKENMAQESSIQEQGVTSNTSDSESSSK 28 1 Q92796-2;Q92796-3 Q92796-2 DLG3 Disks large homolog 3 1 SKENMAQESSIQEQGVTS(0.002)NT(0.183)S(0.814)DS(0.001)ESSSK;SKENMAQESSIQEQGVT(0.113)S(0.113)NT(0.034)S(0.737)DS(0.002)ESSSK 221.65 1.4084e-34 1020350000.0 738960.0 589350.0 602220.0 539030.0 538440.0 855010.0 827150.0 783580.0 1039710.0 841130.0 True False 734981.5214661749 608966.158480401 687007.3414099229 607271.1427320086 607007.1424160841 795905.1711770472 787137.5944801503 842054.7185386176 783487.4019002223 787448.363272376 0.9333710700874833 0.7733410682952445 0.8724474815782799 0.7711885262017559 0.7708532657221641 1.010739507882812 0.9996053470846846 1.0693459505577172 0.9949698779540371 1.0 19.586825796675335 2.726313872054767 22.465882260895093 1.022042008652039 0.821143413926476 0.7728918189803421 0.05159881273724232 83.82221179204642 153765.81676692865 0.016164082410144356 0.015372398886838059 532.492962011371 -2.726313872054767 -0.20089859472556293 SKEPHELVGS(ph)SPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKEPHELVGSSPHR 14 1 Q3T8J9-3;Q3T8J9 Q3T8J9-3 GON4L GON-4-like protein 1 SKEPHELVGS(0.894)S(0.106)PHR;SKEPHELVGS(0.665)S(0.335)PHR 159.95 2.9176e-06 275500000.0 473670.0 521230.0 459380.0 489540.0 501300.0 589610.0 563910.0 410600.0 654330.0 551930.0 True False 471119.8133496842 538578.8254598116 524056.7109974604 551515.713806333 565137.5835621111 548851.6484926486 536631.5189546046 441241.05698455294 493079.1390727928 516705.35486895306 0.9117765258484106 1.0423325796505556 1.0142273658657395 1.0673698435856322 1.0937327787234592 1.0622139742133088 1.0385638815194884 0.8539510048167792 0.9542752642806414 1.0 18.978982309627593 1.7619135810293682 24.999999999999982 0.9224891752456329 1.0373280494477906 0.36709210951455107 0.05722104256495926 11.22422352685352 12024.825973429213 0.02614717112066925 0.014500336182731546 57.79810252324903 -1.7619135810293682 0.11483887420215766 SKEPHELVGSS(ph)PHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKEPHELVGSSPHR 14 1 Q3T8J9-3;Q3T8J9 Q3T8J9-3 GON4L GON-4-like protein 1 SKEPHELVGS(0.327)S(0.673)PHR 150.23 4.3903e-06 336500000.0 368280.0 416260.0 376110.0 396660.0 404260.0 511430.0 426380.0 358960.0 554720.0 460620.0 True False 366297.221399755 430114.9624655167 429063.01879327535 446877.11532953364 455740.1147632541 476076.0478767242 405754.37047022465 385747.4179619468 418016.68886717584 431222.8372433781 0.8494383640285272 0.9974308531873136 0.9949914098615241 1.0363020617976233 1.0568552391070112 1.1040139963831075 0.9409389657190644 0.8945431100724255 0.969375118301657 1.0 18.718074058615645 -0.8297091948632539 5.00015971238917 1.0000000246642118 0.9824729760956776 0.0052850479265622585 0.07135086379684455 9911511.269316139 1982238.945326125 2.6742977495937383 0.018101977353357487 0.1480099136096697 0.8297091948632539 -0.017527048568534154 SKEQAELEAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKEQAELEAAR 11 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 162.31 2.3058e-05 3697470000.0 4734800.0 4908800.0 4705400.0 4372470.0 4122800.0 5334700.0 5148000.0 4679390.0 6198700.0 5110300.0 False True 4709308.36288573 5072186.440567733 5367879.4199300185 4926024.253680554 4647814.142249892 4965924.745533035 4898971.572730228 5028589.843260951 4671113.44332449 4784156.278852049 0.9843550436892754 1.0602050068867725 1.1220117209921145 1.0296537083154287 0.9715013204721497 1.0379938396838075 1.0239990684220979 1.0510923034620336 0.9763714166221419 1.0 22.189833086586432 3.4907434921817835 24.887696581285 1.0160730021035773 1.0592988132538947 0.2040033885682968 0.03891167920484014 970.3670789144817 1772848.1597390864 0.010625307331290605 0.015673928084874618 3095.590407268814 -3.4907434921817835 0.04322581115031743 SKEQLLVLSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKEQLLVLSLR 11 1 O15327;D6RJC3;E7EQN9;E9PHC0;E9PG59 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 164.48 0.00098854 0.0 648710.0 713650.0 769730.0 620160.0 559850.0 686770.0 751130.0 615410.0 1001950.0 752500.0 False True 645217.4174384569 737403.4088394658 878101.2933869029 698672.1924135629 631143.5790090726 639295.2063826866 714794.972304751 661335.0191886595 755032.8479421454 704474.8057523378 0.9158843044066033 1.0467420592166703 1.2464623095344654 0.9917632067301853 0.8959065304472433 0.9074777425148041 1.014649447316135 0.9387631946360274 1.0717669983042397 1.0 19.426188586555675 3.4967848502897376 24.978117675730044 0.9645717133445473 1.0760194676028754 0.19341317781665257 0.08913230617327308 1084.638759984139 1377783.863992724 0.023877577278299065 0.036412038082384864 3138.953269560802 -3.4967848502897376 0.11144775425832809 SKESDEPHHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKESDEPHHSK 11 1 Q8IVM0-2;Q8IVM0 Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 0 118.87 0.00042772 11042000.0 19666.0 30377.0 32155.0 37991.0 37608.0 36004.0 41278.0 26354.0 52884.0 42749.0 False True 19560.120441098017 31388.080081715725 36682.14450372967 42800.65670469501 42397.15587991995 33515.12822429965 39281.22544272696 28320.669302900413 39851.44680929432 40020.72222073978 0.48874981149044466 0.7842956933308316 0.9165787739012874 1.0694623767312874 1.0593800793017334 0.8374443629338414 0.9815221531002358 0.7076501305172326 0.995770305930218 1.0 15.288459582147379 4.668283297770145 2.2041134447663717 0.9302866295997122 0.41218545477024593 0.6466091248328633 0.1031541890089052 0.3698568046411634 2.321182989445344 0.028517605733030506 0.35323298782137513 46588.99024293988 -4.668283297770145 -0.5181011748294663 SKESSQVTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKESSQVTSR 10 1 A0A2R8YE10;Q9NRW7;A0A087WU65 A0A2R8YE10 VPS45 Vacuolar protein sorting-associated protein 45 0 60.434 0.089487 36155000.0 12150.0 14441.0 16502.0 14652.0 16173.0 15513.0 17760.0 17377.0 22574.0 20224.0 False True 12084.585749991904 14921.659955231149 18825.338162044693 16506.941697696595 18232.53568511873 14440.622823674048 16900.880950211525 18673.75997861807 17010.940176102587 18933.28700536248 0.6382719359068071 0.7881177711511416 0.9942984626342372 0.8718476455261747 0.9629883960431554 0.7627108182316165 0.8926543470990899 0.9862925530748621 0.898467348605901 1.0 14.208637278423625 4.521991059864522 3.4119454640801874 0.9168296366967237 0.6472632046439738 0.6231748107384003 0.06913682084460246 0.1594174609961584 3.509681037098471 0.01692745128520693 0.0822132742267396 33265.27054269745 -4.521991059864522 -0.2695664320527499 SKESVPEFPLS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 5 SKESVPEFPLSPPK 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK 172.37 1.7373e-06 25154640000.0 20652400.0 14758090.0 13191150.0 11938800.0 12554020.0 21807200.0 21891700.0 18827000.0 35841200.0 23389300.0 True False 20541209.77309733 15249304.104196204 15048349.260468785 13450250.855887244 14152700.03349375 20299719.592627116 20832714.836584784 20231966.341568857 27008616.50747448 21896574.84941282 0.9381015028315336 0.6964241763412203 0.6872467207295812 0.6142627761824551 0.6463430984446076 0.9270728290717793 0.951414318442751 0.9239785893779363 1.233463073253155 1.0 24.384201879507078 2.5690104473754354 3.3106806107579265 1.004960052395317 0.708539943172797 0.6251215207224416 0.11367959720878816 0.17789625870868594 3.716275600215156 0.04044636742067223 0.036917839848425435 370.6896389745021 -2.5690104473754354 -0.29642010922252005 SKESVPEFPLSPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKESVPEFPLSPPK 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 ; 115.31 0.00083118 613680000.0 1515730.0 1466100.0 1303580.0 1201000.0 1275200.0 1742010.0 1767300.0 1537140.0 2383500.0 1822810.0 False True 1507569.4780934341 1514898.252223835 1487112.7330795198 1353046.4768586964 1437589.1612974356 1621588.948950457 1681808.9472583802 1651849.1922387616 1796118.3622636904 1706476.7052138445 0.8834398228158147 0.8877345044296974 0.8714521144858901 0.7928889229631421 0.8424311664525689 0.950255543480888 0.9855446266098469 0.9679881285175601 1.0525302553360156 1.0 20.702589289942114 2.5670698766152857 3.0261462429074415 0.9943367738764142 0.8548134031389457 0.8186084921616703 0.032511040988733454 0.11997347853737368 2.129525706235008 0.012437978644549338 0.01128345060018735 369.036970680744 -2.5670698766152857 -0.13952337073746846 SKETQEELNK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKETQEELNK 10 1 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 0 ;; 110.08 0.0017637 332478000.0 387864.0 327386.0 301732.0 276322.0 335737.0 394270.0 373510.0 369667.0 533080.0 379748.0 False True 385775.7833197411 338282.8451009841 344213.2428984411 311304.3368680667 378491.1168808948 367015.0429117496 355441.8943532383 397253.428670991 401709.5769060325 355512.1575213804 1.0851268378818821 0.9515366435271341 0.9682179233989775 0.8756503266680689 1.0646362124989563 1.0323558144131189 0.999802360716348 1.1174116560193874 1.129946102847056 1.0 18.43953937126012 2.3929821382005816 1.2018451352858872 1.0853071462219588 0.9766850310477715 0.2391249019705597 0.06580738326479466 0.5764930185889323 1.658735123859001 0.03888479879947646 0.025689963958900865 247.16224892621383 -2.3929821382005816 -0.1086221151741873 SKEVWK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKEVWK 6 1 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 68.915 0.08653200000000001 361250000.0 341840.0 328140.0 296620.0 292470.0 275340.0 372660.0 353510.0 308390.0 459440.0 365290.0 False True 339999.5714219948 339061.94153518096 338381.51773274137 329496.67201237555 310402.91693196027 346898.89134728105 336409.3707606575 331403.62777269003 346217.16818058764 341976.8794594968 0.9942180066657512 0.9914762134536025 0.9894865356615979 0.9635056982014499 0.9076722304225946 1.0143928206361892 0.9837196341821736 0.9690819692152344 1.0123993432766352 1.0 18.383539264411517 1.2375713151689005 24.998097260548803 1.006199681706179 0.976137349910993 0.16120148464357165 0.026898040911648272 48.39658993131161 1222604.9797804882 0.021788483445873683 0.0066239632921505165 17.281097288037028 -1.2375713151689005 -0.030062331795185915 SKEYFSK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKEYFSK 7 1 Q06830;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 ;;; 104.2 0.0074828 25858230000.0 8277800.0 8058220.0 7890650.0 6895180.0 6683080.0 8330870.0 9476540.0 8423440.0 11945800.0 8337990.0 False True 8233233.244550033 8326432.981403139 9001584.933240706 7768109.081021265 7534130.624281422 7754976.565658572 9018123.556301666 9052039.866161631 9001917.655519016 7805852.339687625 1.0547513437692713 1.0666910696053913 1.1531841164191088 0.9951647485727523 0.9651900005814001 0.99348235505681 1.1553028630134905 1.1596478478254018 1.1532267411401296 1.0 22.896124741450862 2.229222460102779 24.995010894525148 1.1343788276519877 1.0393464001376223 0.24239941813293786 0.06556526077870627 244.21635195514926 653677.3305393653 0.02526725364921947 0.01890492760326325 169.52059190386805 -2.229222460102779 -0.09503242751436547 SKFDNLYGCR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKFDNLYGCR 10 1 P23526;P23526-2 P23526 AHCY Adenosylhomocysteinase 0 105.46 0.0023221 676930000.0 1157100.0 1346000.0 1246600.0 1087700.0 936070.0 1098000.0 1196100.0 914140.0 1653800.0 1236800.0 False True 1150870.3021658945 1390800.7963258175 1422110.444358557 1225402.7084756077 1055272.9659784264 1022097.8444139821 1138240.073454279 982357.7687088648 1246243.1497846402 1157866.3651222482 0.9939577975774303 1.2011755745050734 1.2282163876557635 1.058328271195812 0.9113944387416505 0.8827424953362977 0.983049605499252 0.848420679881436 1.0763272751713977 1.0 20.143037323946096 3.4244440055895953 4.166309128029551 0.9364676177759557 1.1475073865529846 0.5085445817998644 0.08392327621281355 0.14799404197960503 5.3774442087810845 0.022939393106356294 0.03235954018520363 2657.3209140462186 -3.4244440055895953 0.2110397687770289 SKFDS(ph)DEEEEDTENVEAASSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKFDSDEEEEDTENVEAASSGK 22 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 S(0.022)KFDS(0.978)DEEEEDTENVEAASSGK;S(0.141)KFDS(0.859)DEEEEDTENVEAASSGK;S(0.016)KFDS(0.984)DEEEEDTENVEAASSGK;S(0.37)KFDS(0.63)DEEEEDTENVEAASSGK 283.73 4.6062e-46 5135830000.0 3394920.0 2403840.0 2202960.0 2109160.0 2142420.0 3300360.0 3314180.0 3139560.0 4930310.0 3214370.0 True False 3376642.127931074 2483850.3612480354 2513117.619528422 2376179.4397429554 2415244.487881784 3072213.8814117764 3153860.4520029253 3373849.9095626497 3715301.1632692693 3009226.154639389 1.122096497375324 0.8254116618714847 0.835137503924022 0.7896313928016172 0.8026131516098082 1.0209315363935934 1.0480636183294334 1.1211686115252961 1.2346367379338736 1.0 21.520961104016735 2.424428414689033 2.2618447295599173 1.1168360769783348 0.8663530607216259 0.5027067803746105 0.10560370879322334 0.23676712128903687 2.472580897936598 0.04264858285771218 0.0340715462416141 265.7225519597954 -2.424428414689033 -0.2504830162567089 SKFEDMAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKFEDMAK 8 1 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 ; 111.06 0.0030158000000000003 4594200000.0 3407200.0 3134000.0 3716500.0 2462100.0 1390260.0 2640900.0 3445000.0 2439300.0 5994300.0 2826600.0 False True 3388856.0137755033 3238313.295456993 4239750.895602901 2773801.6075551985 1567301.370283384 2458340.799009911 3278352.1888220003 2621332.952514419 4517085.084504823 2646203.968025989 1.2806480735132133 1.223758007540403 1.6022010951656396 1.0482191248561972 0.5922829038203571 0.9290065424713954 1.2388886980876157 0.9906012477450393 1.7070056348961156 1.0 21.335492837410325 3.696060816889754 22.83429686265249 1.0528512422881193 1.3543579849191796 0.1886028878313981 0.2793911484113236 278.72200745736 149751.31925756668 0.07551050013724549 0.11698257889200411 4966.618671536602 -3.696060816889754 0.30150674263106025 SKFENEEFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKFENEEFFR 10 1 Q13951-2;A0A494C0A9;Q13951;H3BSC0;J3KRT0 Q13951-2 CBFB Core-binding factor subunit beta 0 ; 127.78 0.00031659 1301130000.0 1636690.0 1717340.0 1666540.0 1656140.0 1595790.0 1732390.0 1824070.0 1635640.0 2100540.0 1754770.0 False True 1627878.2428933547 1774500.6237460459 1901174.346174643 1865807.154192142 1799004.3975116333 1612633.9569074116 1735832.7654759174 1757699.7624116293 1582890.062793947 1642779.076265819 0.990929496493019 1.0801821434076466 1.1572915516407594 1.1357626726250285 1.0950981927532997 0.9816499249388239 1.0566440676987545 1.0699550461812768 0.9635440855455715 1.0 20.647707046565213 2.799355681112189 11.485651567183599 1.0264120990077743 1.0973207099824969 0.3508695604326608 0.05114242425861171 1.327160652710297 248.68629006700917 0.016404410923578458 0.017399166062419296 630.0219507992732 -2.799355681112189 0.07090861097472256 SKFGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKFGGR 6 1 P25391 P25391 LAMA1 Laminin subunit alpha-1 0 74.517 0.073068 487330000.0 950960.0 944890.0 817170.0 868500.0 851740.0 625800.0 841120.0 803070.0 1128700.0 951430.0 False True 945840.1370215885 976340.0924519332 932220.4330310298 978452.0109506893 960204.0403414974 582539.9189747444 800431.8122095678 862999.1613068323 850547.0088051308 890708.9228397966 1.0618958817724877 1.0961382191379914 1.0466050233996582 1.0985092726265124 1.078022253645033 0.6540182814352701 0.8986457771834109 0.9688902167448611 0.9549101698604076 1.0 19.764594521016775 2.8965296410683674 22.59979873668699 0.896578206908751 1.077021075478378 0.5051976106935809 0.0895275103893509 13.836086588645472 3014.76942883088 0.027805892536882527 0.02949263012274443 788.0062118927359 -2.8965296410683674 0.180442868569627 SKGGVVGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKGGVVGIK 9 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 112.13 0.0022143 0.0 1823100.0 1770800.0 1804100.0 1550900.0 1483200.0 2519700.0 2380700.0 1931000.0 2963000.0 2313300.0 False True 1813284.6321654518 1829740.0075287973 2058101.5984816873 1747243.780982639 1672076.7283848464 2345519.0697358004 2265536.4458428267 2075101.0254193165 2232808.3521658564 2165663.2134842314 0.8372883746998433 0.8448866823503072 0.9503331753834922 0.8067938588528649 0.7720852983852103 1.0830488577964104 1.0461166961403543 0.9581827001072739 1.0310044231547888 1.0 21.046377473390326 2.736717215636982 24.999998904128645 1.017760547181333 0.8464542150188065 0.7516792978858371 0.05204612718740124 91.87611377527756 1246005.2360861425 0.01749605210077003 0.017272966609264456 545.4026146835362 -2.736717215636982 -0.17130633216252644 SKGHYEVTGS(ph)DDETGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKGHYEVTGSDDETGK 16 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 SKGHYEVTGS(1)DDETGK;SKGHYEVTGS(1)DDETGK;SKGHYEVT(0.011)GS(0.989)DDETGK;SKGHYEVT(0.006)GS(0.879)DDET(0.115)GK 211.96 3.4723e-12 2963460000.0 2736310.0 2409130.0 2178080.0 2059120.0 2121560.0 3562890.0 3286680.0 2956290.0 4549900.0 3237260.0 True False 2721578.010992623 2489316.4357001614 2484734.7317892583 2319804.3808736703 2391728.0905286926 3316595.800440923 3127690.732063132 3176903.371536447 3428638.110536421 3030655.2952422737 0.8980163515346463 0.8213789405901943 0.8198671540408973 0.7654464645040481 0.7891785298985958 1.0943493988404216 1.0320179721439093 1.048256255511395 1.1313190635434283 1.0 21.531198339584 2.739577219678681 24.99999664996506 1.0603608756273044 0.8160197089453043 0.8757944575980283 0.045638411018186206 29.72360697096922 730962.494822108 0.014349462586493198 0.014449784870715065 549.0061629047335 -2.739577219678681 -0.24434116668200012 SKGHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKGHYEVTGSDDETGKLQGSGVSLASK 27 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 SKGHYEVT(0.058)GS(0.942)DDETGKLQGSGVSLASK;SKGHYEVT(0.01)GS(0.99)DDETGKLQGSGVSLASK 284.48 1.2447999999999995e-61 2468700000.0 1127880.0 1139160.0 1201970.0 1185630.0 1130010.0 1792300.0 1842150.0 1488280.0 2715000.0 1847900.0 True False 1121807.6193992477 1177076.2519632373 1371196.9282894717 1335730.6364346168 1273910.0754059853 1668402.519620381 1753038.1668036112 1599343.0109327114 2045924.6291361118 1729965.4399332148 0.6484566648005148 0.6804044894727367 0.7926152145226708 0.7721140582358584 0.7363789160176313 0.9644137860261472 1.0133371027754676 0.9244941974068881 1.1826390180459874 1.0 20.722311786298896 2.7179893921613987 0.7655783032994127 1.0556125418951656 0.6832004943820253 0.8013757485483239 0.07261906592295775 0.29292234652811605 0.3680456555897046 0.050131970591309596 0.047631572673766435 522.3834293924161 -2.7179893921613987 -0.3724120475131403 SKGQENDHVHEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SKGQENDHVHEK 12 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 0 ;;;; 231.06 2.7942e-12 1020811000.0 876981.0 803910.0 722798.0 677144.0 738959.0 883733.0 937881.0 17384.6 1242633.0 376464.0 False True 872259.4317377481 830667.6583761425 824561.6757271594 762870.3609708606 833061.0484968562 822642.6177937175 892512.1129766519 18681.927129210097 936402.7475791129 352437.7452129545 2.4749319378680625 2.356920249487539 2.339595253138769 2.16455351713225 2.3637112080418436 2.334150155502356 2.532396501507994 0.05300773649519821 2.6569309340385985 1.0 18.427008916048866 1.7732055032255225 24.999999998467402 1.147599542147594 2.3560661504023104 0.4259341106745337 0.5983902110816992 29.43264665926341 21248.50903324035 0.25420235134509683 0.1410466967455787 59.320595651267055 -1.7732055032255225 1.2084666082547164 SKGQESFK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKGQESFK 8 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 0 ;;; 120.45 0.0013671 20315100000.0 11345700.0 10218600.0 11355300.0 8923300.0 7879770.0 9929700.0 12795900.0 11277700.0 18374600.0 12401700.0 False True 11284616.01182576 10558719.923725856 12954027.537963033 10052988.865073446 8883212.00244407 9243283.21099955 12176913.43191508 12119299.241000235 13846426.037025552 11610212.888370449 0.9719559942892324 0.9094337912013796 1.115744186821814 0.8658746365575415 0.7651205096628398 0.7961338263020336 1.0488105213051069 1.0438481496872225 1.1926074198772911 1.0 23.468891090349594 2.098419385663689 7.623904270523827 1.074404086102599 0.9061083897943172 0.3980464768622225 0.10118022343026864 0.26155301564832417 17.762907386615215 0.04096722933993481 0.030201734251087357 125.43518817335443 -2.098419385663689 -0.16829569630828178 SKGYAFIEFASFEDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKGYAFIEFASFEDAK 16 1 P19338;H7BY16 P19338 NCL Nucleolin 0 ; 174.49 3.5143e-09 850780000.0 743400.0 855200.0 766760.0 875190.0 858380.0 972320.0 1074660.0 892190.0 1722890.0 1121940.0 False True 739397.6169995052 883664.8150206839 874713.1432026059 985988.9642647482 967689.6049831348 905105.806995084 1022674.5902001305 958769.7482490226 1298306.8450432085 1050336.8286588402 0.7039623831372563 0.841315653140548 0.8327929853888056 0.938735972462989 0.9213136001512615 0.86172909708479 0.9736634594694435 0.9128212227626654 1.236086186467438 1.0 20.00242062398708 6.654254769313986 0.22115565787345803 1.0634020441908187 1.2120868688480612e-18 0.5656274965473667 0.086789286750872 21.516664668799006 0.4604494473365211 0.13506284341983468 7.248126035708287 4510812.438397697 -6.654254769313986 -1.0634020441908187 SKHDSSAPDPAPDS(ph)ADEVMPEAVPEVASEPGLESASHPNVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKHDSSAPDPAPDSADEVMPEAVPEVASEPGLESASHPNVDR 42 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(0.055)KHDS(0.047)S(0.047)APDPAPDS(0.851)ADEVMPEAVPEVASEPGLESASHPNVDR;S(0.001)KHDS(0.002)S(0.002)APDPAPDS(0.996)ADEVMPEAVPEVASEPGLESASHPNVDR 87.199 0.00011992 804170000.0 86482.0 154522.0 184631.0 187727.0 195695.0 203031.0 206860.0 178736.0 210227.0 231254.0 True False 86016.3905210535 159665.17135947858 210625.4399585794 211493.21895191708 220615.59827485983 188995.9448535656 196853.39151806038 192074.18792301766 158419.37274747598 216495.17173349 0.39731320487341604 0.7374999178089279 0.972887470293627 0.9768957767440171 1.0190324177134176 0.8729799530412784 0.9092738186345835 0.8871984829272079 0.7317455233712717 1.0 17.723975324821495 4.6387546968435505 2.5724074376074837 0.9181610459880257 0.34435333466873563 0.8017306689318199 0.07956151166791213 0.16429005043928174 1.6036461694267772 0.02030429121145948 0.1838115758640502 43526.59523666034 -4.6387546968435505 -0.5738077113192901 down SKHEEEEWT(ph)DDDLVESL ddPTM_BT-474_Trastuzumab_2h_R1 4 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 S(0.011)KHEEEEWT(0.989)DDDLVESL;S(0.005)KHEEEEWT(0.995)DDDLVESL;S(0.411)KHEEEEWT(0.589)DDDLVESL;S(0.136)KHEEEEWT(0.864)DDDLVESL 143.4 8.9028e-07 1642710000.0 2080020.0 2039780.0 1652540.0 1788090.0 2035700.0 2501830.0 2165440.0 1781370.0 2665120.0 2242340.0 True False 2068821.4034319478 2107672.844226952 1885203.2678648247 2014462.0106629995 2294934.3284607786 2328884.3807743452 2060689.3944158822 1914304.8750135726 2008336.886778354 2099231.941436139 0.985513493100059 1.0040209481497497 0.8980442945123579 0.9596185971164548 1.0932257094424518 1.1093983160246195 0.9816396910415298 0.9119072729542916 0.9567008042972129 1.0 21.001430146279684 1.9951007606935787 24.996006251584593 0.9465043211979766 1.0081421466775273 0.12473546591446427 0.060547376741130844 404.06163077996166 2061533.6829071108 0.025712806632252096 0.01847276560402077 98.878247553892 -1.9951007606935787 0.06163782547955077 SKIEDYFPEFAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKIEDYFPEFAR 12 1 P63092-4;P63092;P63092-3;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJY2;A0A0A0MR13;P63092-2;A0A590UJB0;Q5JWF2 P63092-4;P63092-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas 0 89.992 0.0083094 221160000.0 254860.0 332690.0 324890.0 293790.0 343740.0 475090.0 402260.0 357030.0 466500.0 390630.0 False True 253487.86207760774 343763.38553464826 370631.68800549617 330983.783877033 387513.2514933971 442248.1465415657 382801.14701757254 383673.3915616054 351537.3257797402 365699.65896483115 0.6931585957590005 0.940015603262314 1.013486556303131 0.9050699823290326 1.059648927730238 1.2093206425005065 1.046763751711308 1.049148890780078 0.9612733213228045 1.0 18.48029975572376 5.341700237058663 0.9186402080689736 1.0489240942580833 1.3308217707790044e-17 0.6586360056244518 0.07365605141508876 3.503432863593884 1.0630793322194054 0.02417610332758291 4.778408466387061 219634.33680962873 -5.341700237058663 -1.0489240942580833 SKIETEIK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKIETEIK 8 1 Q9HB71;B2ZWH1;Q9HB71-2 Q9HB71 CACYBP Calcyclin-binding protein 0 ;;; 123.75 0.0012169 2924070000.0 5326900.0 4572710.0 3738480.0 3790980.0 3604160.0 5342400.0 5490400.0 5149400.0 8265500.0 5639300.0 False True 5298220.562274226 4724909.888088437 4264825.488549324 4270917.679302066 4063128.412470011 4973092.462656887 5224808.376635214 5533674.376123383 6228578.277025611 5279395.045952373 1.0035658472529512 0.8949718380538597 0.8078246563153285 0.8089786125356369 0.7696200752366781 0.941981499654904 0.9896604310073349 1.0481644824753096 1.1797901507296678 1.0 22.331941193186953 2.1270051282947073 1.7394630523430743 1.0827526574035897 0.8553218619099782 0.6167143385761903 0.07449940217044036 0.24265863073995614 1.416828876512012 0.043977250168909125 0.0246026226897323 133.96925068703794 -2.1270051282947073 -0.22743079549361156 SKIGS(ph)TENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKIGSTENLK 10 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 1 SKIGS(0.712)T(0.288)ENLK;S(0.001)KIGS(0.976)T(0.023)ENLK 114.69 0.00080057 373990000.0 804410.0 667250.0 577740.0 564820.0 628680.0 945420.0 907270.0 848870.0 1695270.0 1052790.0 True False 800079.1459383528 689459.0128888567 659080.7701938975 636326.1540877013 708738.6715216995 880065.3406792963 863381.883992028 912216.9898745188 1277493.4239541702 985600.0408611351 0.8117685803252508 0.6995322486862571 0.6687101693076715 0.6456231003518756 0.7190935898323043 0.8929234011702847 0.8759961933825376 0.9255447971344438 1.2961580468665597 1.0 19.910642790281067 1.9442647211439852 1.0301262627610772 1.1166742602426587 0.7057486297598662 0.7178757664710567 0.0987334360529245 0.2761529136739252 0.5385227568213288 0.0796311443909508 0.03606698300891943 87.95584821479963 -1.9442647211439852 -0.4109256304827925 SKLEVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKLEVGR 7 1 P41223;C9JCD9 P41223 BUD31 Protein BUD31 homolog 0 ;; 109.71 0.0063531 494670000.0 837650.0 883870.0 832980.0 744460.0 709260.0 857210.0 882850.0 735130.0 1161000.0 933720.0 False True 833140.1854716649 913289.0786393016 950256.3436080466 838708.5596687954 799580.056886621 797953.0903552911 840143.1726854853 789989.1335145013 874887.1066029562 874129.1902020902 0.9531087564746018 1.0447987424240552 1.0870891331158459 0.9594789523902001 0.9147161150192982 0.9128548723682505 0.9611201434552853 0.9037441403047797 1.000867053073346 1.0 19.73748699019269 3.5570552168495913 7.224570151501602 0.9403236142095048 1.0295891414429297 0.38506988596940095 0.04449896313194424 0.2341659807129944 18.433983138211115 0.011475960752938583 0.01778434711826114 3606.2449044378454 -3.5570552168495913 0.08926552723342485 SKLPKPVQDLIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKLPKPVQDLIK 12 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 134.88 7.7347e-05 738640000.0 2000000.0 1768600.0 1920300.0 1423600.0 1284200.0 1914600.0 2121500.0 1867800.0 4207600.0 2047000.0 False True 1989232.2222208893 1827466.7818587245 2190661.548453185 1603827.614035004 1447735.257950256 1782248.2084836136 2018874.9400829822 2007184.7204962233 3170693.358951419 1916358.7074751293 1.038027074191018 0.9536141510095868 1.143137524257898 0.836914095351232 0.7554615178792382 0.9300180605706063 1.053495325383483 1.0473951002319188 1.6545406382341228 1.0 20.86993620193202 1.423521105719698 6.601208852239417 1.3401141268643555 0.9617887634474952 0.3942473145398949 0.17949705880420294 0.18146959532250936 14.556098949476297 0.11192751815059715 0.04285657422787785 26.51679955466188 -1.423521105719698 -0.3783253634168603 SKLS(ph)PS(ph)PSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKLSPSPSLR 10 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(0.06)KLS(0.94)PS(0.995)PS(0.005)LR;S(0.109)KLS(0.886)PS(0.578)PS(0.427)LR;S(0.06)KLS(0.94)PS(0.907)PS(0.094)LR;S(0.002)KLS(0.998)PS(0.983)PS(0.017)LR 119.17 0.00041432 2631690000.0 6521000.0 5516010.0 4286220.0 5033400.0 5099250.0 6857600.0 6425500.0 6553500.0 9629500.0 6973300.0 True False 6485891.660551205 5699607.058351546 4889682.519507893 5670627.923913872 5748609.261877312 6383550.253054033 6114674.01720631 7042555.447998709 7256438.753689203 6528258.023857513 0.9935103111501598 0.8730670628400925 0.7490026438352395 0.8686280326529017 0.8805732311543178 0.9778336318395128 0.9366471108924064 1.0787801925508607 1.11154288436066 1.0 22.63826664905747 2.216368107321804 1.228787816540638 1.0703195316955794 0.8648605855736651 0.5793814762449314 0.06667603012441255 0.3182832619612895 0.9242037801492134 0.04462559285477486 0.024932830987853493 164.57660809530756 -2.216368107321804 -0.2054589461219143 SKLS(ph)PS(ph)PSLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKLSPSPSLRK 11 2 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(0.126)KLS(0.873)PS(0.968)PS(0.033)LRK 54.09 0.071798 114380000.0 451160.0 328530.0 258210.0 270710.0 311240.0 423150.0 431780.0 450210.0 701420.0 449090.0 True False 448731.0046885878 339464.92244942096 294563.7235984464 304981.8582434786 350874.5691359891 393898.6364879563 410893.15184022166 483806.9563200577 528564.4395464644 420428.69171470695 1.0673177486019108 0.8074256803571672 0.7006270728029438 0.7254068626944046 0.8345638060641313 0.9368976101070825 0.9773194835119486 1.150746763611361 1.2572035400122878 1.0 18.68150160230509 2.1406885111460596 1.5666029219524988 1.1528493859932385 0.8161246890276834 0.5779891967936042 0.11213415619396644 0.2638485296564485 1.2456003340939719 0.06822324765802355 0.037470461300962966 138.25744000035374 -2.1406885111460596 -0.33672469696555507 SKLS(ph)PSPS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKLSPSPSLR 10 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(0.002)KLS(0.998)PS(0.187)PS(0.814)LR 150.9 0.00024805 253390000.0 831570.0 707580.0 527340.0 589920.0 650360.0 853750.0 774290.0 743990.0 1194200.0 816810.0 True False 827092.9195161132 731131.3725588577 601584.8882785505 664603.8115141402 733179.4910142721 794732.2720113273 736834.6346249589 799510.3117046697 899905.4114601635 764680.4864937763 1.0816189691311613 0.9561266247439522 0.7867140575757934 0.8691261556333036 0.9588050224428466 1.0392997938986843 0.963584984368443 1.0455482071611315 1.1768384669869405 1.0 19.544497533560772 2.248070509394009 1.099272444902565 1.0756993285955891 0.921401691281137 0.31335065112283744 0.08596458848930989 0.6216653077175973 1.4431905015237885 0.06184218409658999 0.03520683238513118 177.03963657042706 -2.248070509394009 -0.15429763731445212 SKLS(ph)PSPSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKLSPSPSLR 10 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.04)KLS(0.856)PS(0.104)PSLR;SKLS(0.977)PS(0.023)PSLR;SKLS(0.77)PS(0.23)PSLR;S(0.001)KLS(0.997)PS(0.002)PSLR 170.95 2.5258e-06 3802310000.0 5140640.0 5410090.0 4895230.0 4798160.0 4740440.0 5928730.0 5804160.0 5390620.0 7373450.0 6087930.0 True False 5112963.365418801 5590161.575181531 5584435.833898072 5405606.564033577 5344106.935210794 5518890.849829244 5523390.6067556115 5792895.437413715 5556362.046668007 5699393.095260895 0.8971066357346511 0.980834534791048 0.9798299118096607 0.9484530148531772 0.9376624573683952 0.9683295673039749 0.9691190824069266 1.0164056664613235 0.9749041615129478 1.0 22.4423768701675 2.064170706072486 2.5440580409712243 0.9981785665402487 0.953233479140687 0.39634013161630366 0.024623140497378362 0.2907199845063792 3.6543862868828008 0.011920067700234979 0.007111552900944003 115.92329208027968 -2.064170706072486 -0.04494508739956171 SKLSPS(ph)PSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKLSPSPSLR 10 1 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.001)KLS(0.125)PS(0.842)PS(0.031)LR 118.13 0.00052457 1130100000.0 1319700.0 1447500.0 1295700.0 1233400.0 1171400.0 1521800.0 1554700.0 1464300.0 1992300.0 1593400.0 True False 1312594.8818324546 1495679.1624677707 1478123.297573707 1389548.3135366498 1320570.8465682373 1416601.5479318753 1479493.221469247 1573573.5015647358 1501324.3604522538 1491707.8478216284 0.8799275835072289 1.002662260342695 0.9908932903532289 0.9315150520699048 0.8852744513590205 0.949650797909636 0.9918116497340825 1.054880487397487 1.006446646134274 1.0 20.508533579602002 2.1045093854785732 3.4585468282861394 1.0260175523951005 0.9421441922089436 0.46567042268709524 0.039087863470629196 0.21167347842583106 4.939387776092738 0.017088542840354774 0.01165836025427401 127.2065240216348 -2.1045093854785732 -0.08387336018615688 SKLTFSCLGGSDNFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKLTFSCLGGSDNFK 15 1 A0A087WYT3;Q15185-4;Q15185;Q15185-3;Q15185-2 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 163.56 1.3965e-06 479070000.0 482060.0 557380.0 551170.0 556590.0 525500.0 632790.0 668180.0 545550.0 1077200.0 746020.0 False True 479464.64252190077 575932.0563566746 628769.9451444778 627054.2369315411 592419.3101174737 589046.7167274347 635857.580704523 586261.7112467686 811738.493740485 698408.3649001452 0.6865104523632848 0.8246351064810319 0.9002898257588539 0.8978332283021754 0.8482420026601124 0.8434130321615685 0.9104380941878246 0.839425385935332 1.162269145869327 1.0 19.413711312796615 7.999999997831709 0.13794272492596976 1.05534698582392 0.009960241055825582 0.48099334100073554 0.08492137882158193 74.98972941781567 0.6908273310738313 0.37491303541266646 15.428560171093634 99999999.50073247 -7.999999997831709 -1.0453867447680945 SKNVGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKNVGWR 7 1 P27695 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ; 93.429 0.013627 1271010000.0 944910.0 1332410.0 1235240.0 1442760.0 1315950.0 1279890.0 1480510.0 1216730.0 1811130.0 1429280.0 False True 939822.7095493698 1376758.4613911463 1409151.055101448 1625413.2680704857 1483528.4322532618 1191414.2168369868 1408892.0752025722 1307528.5710297497 1364801.2793986313 1338062.1267318274 0.7023759889571464 1.0289196845843276 1.0531282718114539 1.2147517186219925 1.1087141640252018 0.8904027645913398 1.0529347233253994 0.9771807638135197 1.0199834911493335 1.0 20.351713671736363 4.738418083724825 5.763939748065895 1.0396885162693534 0.6919021260868673 0.6141540353870216 0.07995327619562013 0.09694892331834479 14.069995141339502 0.020334317403779226 0.13270393169594322 54754.28141369279 -4.738418083724825 -0.34778639018248614 SKPAGS(ph)DGER ddPTM_BT-474_Trastuzumab_2h_R1 2 SKPAGSDGER 10 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.013)KPAGS(0.987)DGER;SKPAGS(1)DGER 107.69 0.0013631 1877550000.0 2717540.0 2375860.0 2003910.0 1937850.0 1912960.0 1588170.0 2396170.0 2294260.0 3206080.0 2460760.0 True False 2702909.0665870747 2454939.063862304 2286043.109702037 2183181.6113077644 2156564.1169977593 1478383.5460500482 2280258.1028416827 2465469.3312162207 2415984.543270977 2303712.1900373707 1.1732841794543911 1.065644864180052 0.992330170230576 0.9476798450557963 0.9361256698315147 0.6417396897248983 0.989819002869752 1.0702158637169976 1.0487354078860802 1.0 21.135529056962813 4.49301686578802 1.5814337687863884 0.948146776370657 1.2015364054040003 0.2933657227377676 0.11125547529178784 0.9416617407305895 3.1933162469050362 0.033382223449562216 0.3202254346733167 31118.371826828734 -4.49301686578802 0.2533896290333433 SKPAGS(ph)DGERR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKPAGSDGERR 11 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 SKPAGS(1)DGERR;S(0.001)KPAGS(0.999)DGERR;SKPAGS(1)DGERR;S(0.001)KPAGS(0.999)DGERR 119.32 0.00031443 5728380000.0 7274500.0 7060300.0 6222100.0 6068780.0 6431580.0 6508200.0 7645500.0 7181400.0 8982400.0 7254700.0 True False 7235334.900272929 7295297.817458522 7098117.596537284 6837086.925753973 7250603.590038696 6058303.452654902 7275657.95635373 7717312.534410299 6768807.877993449 6791698.83493885 1.0653203382711645 1.0741491922358193 1.0451166591813685 1.0066828774240741 1.067568478263359 0.8920159152948437 1.0712574472420988 1.136286034167147 0.9966295683154202 1.0 22.6953410560459 -0.5106187500643622 6.425276121806956 0.9999977856531334 1.0443948308300974 0.0301611391203902 0.0616030655922674 0.0 7.152077243692627e-11 0.061678513227751454 0.014537764985615745 0.30858957472737086 0.5106187500643622 0.04439704517696408 SKPAGSDGER ddPTM_BT-474_Trastuzumab_2h_R1 5 SKPAGSDGER 10 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;;; 117.23 0.00089818 1924097000.0 2732960.0 2508500.0 2383050.0 2180290.0 2293720.0 1789480.0 2566360.0 2463670.0 3358550.0 2648920.0 False True 2718246.047020403 2591993.9060797277 2718562.7261580788 2456314.4904498328 2585811.6460564216 1665777.4595828168 2442215.3623527507 2647521.565662774 2530880.3547643027 2479863.6577454917 1.0961272159178426 1.0452162956556155 1.096254916139057 0.9905038459585846 1.042723311815961 0.6717213885448922 0.9848184010942892 1.0676077119778853 1.0205723797997797 1.0 21.24182937312116 3.4959375377276607 2.271424825039781 0.9626193616045196 1.0755560695436366 0.19371370694081425 0.10449758680584308 0.5775461631483854 5.939664529652341 0.03300010050445311 0.05364720033563997 3132.8351128504664 -3.4959375377276607 0.11293670793911703 SKPAGSDGERR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKPAGSDGERR 11 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;; 138.94 2.6532e-05 598410000.0 699973.0 813950.0 700971.0 728250.0 762210.0 685882.0 837880.0 782040.0 1044320.0 844830.0 False True 696204.4231423121 841041.8337068341 799661.6238508441 820446.3753308457 859272.9255273814 638468.5917325598 797348.5433875683 840399.7959186564 786961.3291710586 790912.226104648 0.8802549766757496 1.063382011236672 1.011062413068626 1.037341879732543 1.0864327256128272 0.8072559389770796 1.008137840167954 1.0625702425384693 0.9950046328743101 1.0 19.593158070538276 4.7547375807708265 23.80887267757798 1.0095378916313287 0.8802547836999988 0.2144944258849889 0.07322701673017225 2530.7214928301373 3724534.4560871357 0.017587548142977697 0.42576075074226266 56850.93094927123 -4.7547375807708265 -0.1292831079313299 SKPCGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 SKPCGSPR 8 1 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 SKPCGS(1)PR;SKPCGS(1)PR;SKPCGS(1)PR;SKPCGS(1)PR;SKPCGS(1)PR 96.015 0.0055964 787210000.0 1998000.0 1847710.0 1726850.0 1549050.0 1554400.0 1267820.0 1997550.0 1786600.0 2552510.0 2066890.0 True False 1987242.9899986673 1909209.910385719 1969975.4699507244 1745159.5711723263 1752343.6263493835 1180178.5875272616 1900920.8751179636 1919925.164170974 1923478.112381664 1934979.3106464432 1.0270099422069603 0.9866823380906771 1.0180860638208011 0.901900894531683 0.9056136242428121 0.6099179360904816 0.9823985531312471 0.9922199961557006 0.9940561647344246 1.0 20.883886710067323 3.737483787391665 24.44978000334983 0.9087692626990109 1.0082017408511716 0.1457867348776567 0.10875016444795564 148.86978773691453 3380178.8788228165 0.03058127682508154 0.05045680877358115 5463.661531553038 -3.737483787391665 0.09943247815216072 SKPDLESS(ph)LESLVFDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKPDLESSLESLVFDLR 17 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 SKPDLES(0.061)S(0.938)LES(0.001)LVFDLR;SKPDLES(0.092)S(0.907)LESLVFDLR;SKPDLES(0.022)S(0.978)LESLVFDLR 217.84 2.932e-15 184044000.0 140396.0 180046.0 172926.0 147456.0 172234.0 240134.0 200003.0 221306.0 303179.0 226279.0 True False 139640.123535462 186038.7222698948 197272.47770026312 166123.91448099568 194166.97898910166 223534.10179463323 190328.09080434448 237820.97748909786 228464.59784046296 211837.6804928016 0.6591845379472377 0.8782135540622884 0.9312435693279156 0.7842038021495458 0.9165837661052921 1.0552140736936981 0.898461927838244 1.122656634720749 1.0784889511109728 1.0 17.692599705056303 5.430590125292899 0.3030849132792645 1.0778998965868496 0.2579154385808911 0.6271380349536753 0.08149966667828469 7.587290178414764 0.4115674124794926 0.08896379116003517 2.484920285306208 269519.4584215746 -5.430590125292899 -0.8199844580059585 SKPDPEVGPLLGVQPLPGS(ph)PTADR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKPDPEVGPLLGVQPLPGSPTADR 24 1 A0A6E1W9L1;Q9H5J0 A0A6E1W9L1 ZBTB3 Zinc finger and BTB domain-containing protein 3 1 SKPDPEVGPLLGVQPLPGS(0.955)PT(0.045)ADR 99.372 0.0029477 184480000.0 184650.0 173000.0 157090.0 162200.0 183940.0 203970.0 193200.0 183310.0 250700.0 219820.0 True False 183655.86491654348 178758.20041929148 179206.90654924285 182734.50336925918 207363.6687022039 189870.03399373378 183854.17790432816 196989.52302931927 188918.34420789056 205790.89940262976 0.8924391965323059 0.8686399687167466 0.8708203670300534 0.8879620231006389 1.0076425600166945 0.9226357168606042 0.8934028591061142 0.9572314597056568 0.9180111693776698 1.0 17.65081965843255 7.999999955332613 0.07465673460103513 1.0682349572454533 0.5534441279570362 0.43398646868212654 0.0360753591160065 214.76029840629332 1.1760232175035208 1.320859833945729 11.501914502979066 99999989.71495456 -7.999999955332613 -0.514790829288417 SKPGAAMVEMADGYAVDR ddPTM_BT-474_Trastuzumab_2h_R1 10 SKPGAAMVEMADGYAVDR 18 1 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;;;;;;;; 258.81 1.0307e-30 14856800000.0 9520210.0 10039220.0 9878210.0 9680999.0 10034980.0 11678353.0 10988180.0 10438120.0 12601450.0 11691350.0 False True 9468954.247154757 10373369.368863357 11268976.105059478 10906612.480784805 11312875.221013587 10871055.944995964 10456639.754476069 11217065.518099377 9495991.4982789 10945198.033531692 0.8651240679378923 0.9477552929680686 1.0295817463088253 0.996474659240639 1.0335925568779551 0.9932260623966248 0.9553632307465907 1.0248389735603496 0.867594306579652 1.0 23.38379472191993 4.625967940276322 3.1956722459100306 0.990686713932133 0.860200122753441 0.39109859705074457 0.04611049157388825 0.2608439714635042 4.283424561387441 0.010690488070157024 0.07105615819960732 42263.741391790805 -4.625967940276322 -0.130486591178692 SKPIPIMPAS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKPIPIMPASPQK 13 1 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 1 SKPIPIMPAS(1)PQK;SKPIPIMPAS(1)PQK 143.93 7.8401e-06 158210000.0 748680.0 513720.0 460670.0 419840.0 469550.0 638910.0 626380.0 597300.0 846840.0 635590.0 True False 744649.1900661684 530818.8596497016 525528.3317845799 472991.7009528354 529344.4092591044 594743.6555323648 596079.6063960306 641873.5590279443 638147.6290746318 595026.1020440249 1.251456343693429 0.8920934019973923 0.8832021485768318 0.7949091633594245 0.889615442819581 0.9995253208040963 1.0017705178787735 1.0787317679392379 1.072469975489271 1.0 19.182593431031346 2.3161531306481784 2.2107045355825674 1.0530284978215818 0.9297282950134409 0.12579234984259047 0.11541022862652474 0.548040577051492 5.491208618327181 0.051247409231229744 0.0372326997433074 207.08714017694496 -2.3161531306481784 -0.12330020280814091 SKPIPIMPAS(ph)PQKGHAVNLLDVPVPVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKPIPIMPASPQKGHAVNLLDVPVPVAR 28 2 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 1 S(0.017)KPIPIMPAS(0.983)PQKGHAVNLLDVPVPVAR;S(0.258)KPIPIMPAS(0.742)PQKGHAVNLLDVPVPVAR 175.3 4.1267e-13 3228400000.0 973040.0 979390.0 1005070.0 975670.0 1012500.0 1112570.0 1317310.0 1087680.0 1765610.0 1182910.0 True False 967801.2607549067 1011988.4040962425 1146575.1197749525 1099189.7219623 1141435.873442325 1035660.654608073 1253586.6826871126 1168848.204727127 1330499.0734618807 1107415.6710597964 0.8739277274528012 0.9138288634905898 1.035361111223648 0.9925719408597278 1.0307203548510122 0.9352049837049408 1.1319929051459336 1.055473780327255 1.2014450474487088 1.0 20.07876541205398 6.03211289575212 0.34839006666320926 1.0907004993216791 0.3829419127484878 0.47579345292811737 0.06789567018263902 13.12224844484833 0.6306912990610308 0.057806870344392164 4.670681021511263 1076745.0793710102 -6.03211289575212 -0.7077585865731912 SKPLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKPLTR 6 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ;; 94.407 0.0406 2062479000.0 2889180.0 3034130.0 2685380.0 2738300.0 2870740.0 2421510.0 2999660.0 2985160.0 3935020.0 3018640.0 False True 2873624.975898075 3135119.1828796836 3063458.16225861 3084968.4992357777 3236311.722790934 2254116.7133214055 2854554.9859860055 3207927.797535335 2965287.0475665443 2825987.8108122726 1.016856819022199 1.1093887846524566 1.0840309185120234 1.0916425355525743 1.1451966319206177 0.7976385123450004 1.0101087396995962 1.1351527367746437 1.0492922284453283 1.0 21.430323812307204 SKPNLPS(ph)ESR ddPTM_BT-474_Trastuzumab_2h_R1 6 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 SKPNLPS(0.999)ES(0.001)R;SKPNLPS(1)ESR;SKPNLPS(1)ESR;SKPNLPS(0.998)ES(0.002)R;SKPNLPS(1)ESR;SKPNLPS(0.97)ES(0.03)R 141.65 2.2498e-05 2688700000.0 4484380.0 4167640.0 3686660.0 3330770.0 3871380.0 4475140.0 4090730.0 4185060.0 5100930.0 4241860.0 True False 4460236.596341459 4306357.378008422 4205709.682976832 3752445.1404884597 4364377.2955329865 4165784.1051464356 3892845.761793848 4497370.428504075 3843874.1504601305 3971140.863160946 1.1231625243309056 1.0844131513835678 1.0590683705007569 0.9449287420898969 1.099023541577176 1.0490144390976244 0.9802839778126691 1.1325134472626743 0.9679521031647531 1.0 21.921122105955725 4.351176053797734 2.573952507638894 1.0358314772509127 1.11743357188205 0.23323901984319628 0.05580052488815815 0.4617242345581189 5.774409744596031 0.013923166392888495 0.05655298353746937 22447.917304528066 -4.351176053797734 0.08160209463113732 SKPNLPSES(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 5 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 SKPNLPS(0.003)ES(0.997)R;SKPNLPS(0.004)ES(0.996)R;SKPNLPS(0.007)ES(0.993)R;SKPNLPS(0.156)ES(0.844)R;SKPNLPS(0.005)ES(0.995)R 131.06 0.00068437 2372630000.0 2003540.0 1890420.0 1698190.0 1496600.0 1717950.0 1913480.0 1827690.0 1895210.0 2291220.0 1886100.0 True False 1992753.1632542212 1953341.486916976 1937280.391067914 1686069.406550144 1936720.7494125846 1781205.6314474193 1739277.6522461753 2036640.193881382 1726579.531775042 1765727.4832285512 1.1285734532548386 1.106253091414413 1.09715706951884 0.9548865397208657 1.0968401227302529 1.0087658760289369 0.985020434221246 1.153428381913997 0.9778289957961525 1.0 20.751831268520863 3.9768828445518225 24.350437731441428 1.0374665042812952 1.1134862581223088 0.30806468006710264 0.057102070037012766 704.9220592556468 742532.1351352866 0.014681715602914555 0.026702099980658093 9481.626520731612 -3.9768828445518225 0.07601975384101367 SKPNLPSESR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 0 ;;; 134.98 0.00014262 1362930000.0 1415430.0 1399000.0 1362720.0 1253350.0 1340040.0 1568690.0 1530450.0 1404590.0 1843060.0 1530930.0 False True 1407809.4821490552 1445564.869286642 1554579.1310254228 1412023.981491128 1510686.150960644 1460250.1525990628 1456416.2866132443 1509407.6381635 1388862.5587387106 1433224.7367048836 0.9822670835180668 1.0086100471654775 1.0846722717049555 0.9852076546888954 1.0540469420265879 1.0188563699760813 1.0161813770823411 1.0531548887676667 0.9690472981451843 1.0 20.450833418357696 4.478723551704802 24.999965558314162 1.0266266539582984 0.9888528062108074 0.11213630925209273 0.032829347331868985 88.02322502375853 1373352.1824255472 0.007326627123158095 0.020701366493790615 30110.887183776744 -4.478723551704802 -0.03777384774749104 SKPPPTYES(ph)EEEDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKPPPTYESEEEDK 14 1 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 SKPPPTYES(1)EEEDK;SKPPPTYES(1)EEEDK;SKPPPTYES(1)EEEDK;SKPPPTYES(1)EEEDK 202.97 9.5029e-09 3342050000.0 4080380.0 2485340.0 2317880.0 1877680.0 1982070.0 3512570.0 3145270.0 3094480.0 5028310.0 3042750.0 True False 4058411.687452841 2568063.0394802457 2644217.3566258764 2115394.09547713 2234474.8658506977 3269754.303600386 2993121.27400179 3325405.8110510516 3789150.3764019823 2848559.0899706655 1.4247244165451505 0.9015305487332164 0.9282648781749887 0.7426189974170113 0.7844228591634055 1.1478625509692544 1.0507492312657671 1.1673992731129537 1.3301989731380306 1.0 21.44180090283604 2.7023084769853183 22.862289496480706 1.143514158143404 0.9398388596231575 0.18407246320970927 0.19089462784777705 342.1196500956142 215755.49307918167 0.06265660929990366 0.05907661230136674 503.8583695477741 -2.7023084769853183 -0.20367529852024657 SKPPPTYES(ph)EEEDKCKPMSYEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKPPPTYESEEEDKCKPMSYEEK 23 3 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 SKPPPT(0.002)YES(0.998)EEEDKCKPMSYEEK;SKPPPT(0.012)Y(0.005)ES(0.983)EEEDKCKPMSYEEK 139.93 1.4283e-07 1292380000.0 671830.0 391970.0 321420.0 321340.0 382140.0 625680.0 553600.0 561790.0 1024270.0 543450.0 True False 668212.9419273298 405016.4844991315 366673.14216727705 362021.6110522673 430803.26387876587 582428.214292295 526820.2530426291 603713.6225118177 771852.3830148225 508766.5557290472 1.3133979315322735 0.7960752921715836 0.7207099956518278 0.7115672344725985 0.8467601870202291 1.1447847892786367 1.0354852281666027 1.1866220680459512 1.5171051916114675 1.0 18.956644311195692 2.364716126763702 1.4250984610418442 1.2326387146605264 0.8582821782801217 0.33635472224315355 0.20633247671349966 0.4532223551152617 1.8462446288670182 0.11189914155600744 0.07476305938023099 231.5880397784255 -2.364716126763702 -0.3743565363804048 SKQEALKNDLVEALK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKQEALKNDLVEALK 15 2 P47756-2;B1AK88 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 126.88 4.5898e-05 427180000.0 735100.0 596300.0 581350.0 511740.0 514390.0 762970.0 710560.0 650600.0 1102780.0 736150.0 False True 731142.3032772875 616147.4850290377 663199.0268152158 576526.2315301152 579894.517471602 710227.679738193 676187.4981972012 699151.0756798588 831014.6454949236 689168.2767502773 1.0609053375540378 0.894045047944511 0.9623179841394941 0.8365536415121756 0.8414411066714391 1.0305577080349952 0.9811645733110554 1.0144852850404762 1.2058225451315208 1.0 19.39449676852957 1.897527921889743 1.3564011244361902 1.0899028847026533 0.9234940598932678 0.36576369657482444 0.08317983154738258 0.4434635155708241 1.5171565544616645 0.06145961337280138 0.026703468059407032 78.9819627267332 -1.897527921889743 -0.16640882480938546 SKQPPPAS(ph)SPTKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKQPPPASSPTKR 13 2 A0A0J9YWL0;Q9Y4K1;A0A494C1M5 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 SKQPPPAS(0.497)S(0.497)PT(0.005)KR;SKQPPPAS(0.597)S(0.4)PT(0.003)KR 75.018 0.016974 721310000.0 502330.0 375150.0 380830.0 322610.0 335580.0 519480.0 501840.0 439350.0 679920.0 526210.0 True False 499625.5110941097 387636.6409670363 434447.5537663003 363452.3929220515 378314.1238615067 483569.57032438525 477564.0819850311 472136.52797409456 512362.8264612238 492626.8272889533 1.014206866978138 0.7868768396156908 0.8818999082067296 0.7377844095950264 0.767952744156185 0.9816143651485398 0.9694236195238977 0.9584060425055982 1.0400627779061131 1.0 18.910135670164188 2.721499770021833 23.57362538935521 0.9832595279579407 0.8318179763819377 0.5108871917205635 0.0741844891620216 322.4723839842526 445571.19628875423 0.023712480820709897 0.02242060616567987 526.6229360236501 -2.721499770021833 -0.15144155157600303 SKRPPKS(ph)PEEEGQMSS(ph) ddPTM_BT-474_Trastuzumab_2h_R1 2 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 S(0.001)KRPPKS(0.999)PEEEGQMS(0.4)S(0.6);S(0.002)KRPPKS(0.998)PEEEGQMS(0.023)S(0.977) 151.01 9.8253e-07 799540000.0 977310.0 724730.0 404470.0 643280.0 720290.0 976220.0 998730.0 910180.0 1598050.0 1006240.0 True False 972048.2715493483 748852.1999414638 461415.86028373695 724719.1820430156 812014.662006689 908736.2091746978 950417.6143808988 978102.2534003924 1204231.9902729131 942020.9017145933 1.0318754815101252 0.7949422338490166 0.48981488568237036 0.7693238873192071 0.861992192029628 0.96466671548443 1.0089135099348883 1.0383020712386812 1.278349544135447 1.0 19.845399545384687 2.5305284330005913 1.247992426362027 1.1016076060675917 0.7571055830785002 0.5003088239262117 0.14099680776273182 0.38531160493002814 1.2183326917034123 0.07740964104090861 0.059198413709575404 339.25669974809244 -2.5305284330005913 -0.3445020229890915 SKS(ph)DGEAKPEPSPSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSDGEAKPEPSPSPR 16 2 P26358;K7EJL0;K7ENQ6;K7ERQ1 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 S(0.005)KS(0.995)DGEAKPEPSPSPR 149.71 4.225e-07 308930000.0 392290.0 254110.0 230500.0 204340.0 193170.0 297060.0 244570.0 247820.0 409750.0 235800.0 True False 390177.9542275163 262567.8977372611 262952.3964580842 230209.42304854802 217769.0544917073 276524.94140402344 232739.21475187104 266313.5868044616 308772.6028687005 220751.0421214631 1.767502207363669 1.189429935251627 1.1911717105888033 1.042846370446037 0.9864916260367412 1.25265520265074 1.0543063014117584 1.2063978690434847 1.398736784666256 1.0 17.75206072300101 4.747455564482219 3.8347106877805524 1.1443115061598934 1.8351232487801576 0.7037248918786756 0.12113425103189923 0.14392354886618083 4.1191634550842755 0.028855085969497003 0.28325476745380196 55905.63239237886 -4.747455564482219 0.6908117426202642 SKS(ph)DLSER ddPTM_BT-474_Trastuzumab_2h_R1 3 SKSDLSER 8 1 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 S(0.259)KS(0.732)DLS(0.009)ER;SKS(1)DLSER;S(0.295)KS(0.705)DLSER 156.02 0.00024205 3135960000.0 3599150.0 3142640.0 2875900.0 2779680.0 2864500.0 3192730.0 3388980.0 3079020.0 4489950.0 3400400.0 True False 3579772.5763031556 3247240.8726339997 3280801.7222290817 3131587.202992989 3229277.0957783107 2972024.089978006 3225042.090239179 3308792.107346759 3383461.9847475826 3183383.5607710974 1.1245181449124662 1.0200595720383234 1.0306020809614242 0.9837291495701631 1.0144165898111557 0.9336054023154237 1.0130862425695226 1.0393947333651758 1.062850869258124 1.0 21.60212956477875 4.963294129594719 1.8821848873957294 1.009020890333643 1.2242583208771014 0.520015670399457 0.03283199571290638 1.507429281935995 3.3020337339621038 0.008912357535254094 0.6924657301029957 91895.47556245793 -4.963294129594719 0.21523743054345834 SKS(ph)DSYTLDPDTLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 S(0.201)KS(0.599)DS(0.201)YTLDPDTLR;S(0.025)KS(0.941)DS(0.033)YT(0.001)LDPDTLR;S(0.005)KS(0.495)DS(0.495)YT(0.004)LDPDTLR 232.01 8.6326e-13 1318680000.0 2414160.0 1703810.0 1510060.0 1717720.0 1312350.0 1869540.0 1803500.0 1873340.0 2787350.0 2161360.0 True False 2401162.430798392 1760520.2858751072 1722663.322323184 1935183.1758781993 1479469.993592134 1740303.1002237864 1716257.81496095 2013138.1434277722 2100444.9410764426 2023420.154366609 1.1866850419655068 0.8700715380717371 0.8513621447357922 0.9563921619056768 0.73117290563672 0.8600799475423597 0.8481964614502865 0.9949184992960322 1.0380666301774308 1.0 20.948364489657383 -0.31735487517741756 7.05547188969128 0.9999984431232868 0.9177640446930347 0.02852222852314712 0.11995970178669293 0.0 0.0 0.1141417251391225 0.02690346262073486 0.4815541443347706 0.31735487517741756 -0.08223439843025204 SKS(ph)EDMDNVQSK ddPTM_BT-474_Trastuzumab_2h_R1 9 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 S(0.225)KS(0.775)EDMDNVQSK;S(0.462)KS(0.538)EDMDNVQSK;S(0.173)KS(0.827)EDMDNVQSK;S(0.027)KS(0.973)EDMDNVQSK;SKS(1)EDMDNVQSK;SKS(1)EDMDNVQSK;S(0.001)KS(0.999)EDMDNVQSK;S(0.003)KS(0.997)EDMDNVQSK;SKS(1)EDMDNVQSK 245.39 4.8237e-16 5413050000.0 7792890.0 5120240.0 4681400.0 4317460.0 4081532.0 6489640.0 6727640.0 6340620.0 9786730.0 6585390.0 True False 7750933.9461114695 5290664.093149564 5340500.42854176 4864049.993320852 4601290.907064497 6041026.461769359 6402198.351119424 6813789.261415974 7374921.526963257 6165104.772163972 1.2572266380788313 0.858162884276908 0.8662464995979665 0.788964692908788 0.7463443164566737 0.9798740954160522 1.0384573478825456 1.1052187291578357 1.1962362035211018 1.0 22.555693981875564 2.2495725597095704 2.5125037033265833 1.1035161270076683 0.8916879583534204 0.2753480636847717 0.13774939231662547 0.3470395692045646 4.4906335483732605 0.0600722561690587 0.04262442286723919 177.65300570863664 -2.2495725597095704 -0.21182816865424792 SKS(ph)EEAHAEDSVMDHHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 S(0.249)KS(0.751)EEAHAEDSVMDHHFR 196.41 9.8326e-16 1973300000.0 797960.0 725530.0 642930.0 668210.0 661210.0 625620.0 838700.0 600480.0 909900.0 922950.0 True False 793663.87202169 749678.8274578538 733448.9555522602 752805.3174868848 745411.1742012834 582372.3619510707 798128.8768548651 645290.8667756557 685667.3370353389 864046.540822751 0.9185429655976145 0.8676370913353864 0.848853529178955 0.8712555191414324 0.8626979438995239 0.6740057791291333 0.9237105169067413 0.7468242001885746 0.7935537087880032 1.0 19.720749497943412 4.321642079624872 0.8214322415095037 0.8181013476161674 0.9308003116896288 0.05077715736417343 0.08624292485776398 3.333289060737325 2.5948891382458763 0.030163721629550104 0.3061143891825216 20972.107714725058 -4.321642079624872 0.11269896407346147 SKS(ph)HESQLGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSHESQLGNR 11 1 A8MY87;A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QLI1 A8MY87 KSR1 Kinase suppressor of Ras 1 1 S(0.182)KS(0.816)HES(0.001)QLGNR;S(0.206)KS(0.794)HESQLGNR 70.529 0.0312 120494000.0 74145.0 91674.0 80099.0 85223.0 86415.0 98913.0 108686.0 94720.0 118960.0 116846.0 True False 73745.81155828391 94725.31367189664 91376.24296701119 96012.22306188889 97419.43802816638 92075.37712615685 103428.44295916044 101788.48737841414 89643.9019823322 109388.78824310646 0.6741624323910661 0.8659508455416691 0.8353346301262241 0.8777153911652317 0.8905797348413869 0.8417259081573135 0.9455122834828401 0.9305202938366831 0.8194980803983944 1.0 16.73910535173571 5.588025807974962 0.8816800309277674 0.9011939674607855 1.1180493374957903e-32 0.6174499848124961 0.051611770087506025 5.582220349316429 1.124438092408682 0.015710359780727313 6.926691053187069 387280.65841357526 -5.588025807974962 -0.9011939674607855 SKS(ph)LENFFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKSLENFFLR 10 1 Q6ZMT1;J3QKZ0 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 SKS(1)LENFFLR;S(0.002)KS(0.998)LENFFLR;SKS(1)LENFFLR;S(0.25)KS(0.75)LENFFLR 218.68 5.058600000000001e-09 1326520000.0 2137080.0 1789020.0 1623070.0 1740700.0 1611060.0 1839510.0 1761750.0 1424595.0 2411790.0 1975350.0 True False 2125574.198731911 1848566.4492145735 1851584.148022658 1961072.4415220104 1816218.941499253 1712349.0034407682 1676527.4219614381 1530905.512846833 1817436.670830269 1849281.4718177782 1.1494054480752174 0.9996133511236114 1.0012451734578924 1.0604510299853627 0.9821214180629703 0.9259536904123037 0.9065831500022931 0.827838020429636 0.9827799058862539 1.0 20.818533397684632 2.913318513519092 2.039285303664812 0.906171674833197 1.046512440403861 0.4655761930230641 0.06017403370609166 0.2584443443568036 2.1367406982070465 0.020649540592417588 0.022912108703218994 819.0652740505457 -2.913318513519092 0.140340765570664 SKS(ph)MSDVSAEDVQNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSMSDVSAEDVQNLR 16 1 E9PMS6;E9PJ10 E9PMS6 LMO7 1 S(0.121)KS(0.876)MS(0.003)DVSAEDVQNLR;S(0.004)KS(0.942)MS(0.052)DVS(0.001)AEDVQNLR 172.02 2.8584e-09 1087180000.0 914450.0 491580.0 508180.0 645700.0 466380.0 622030.0 704940.0 668490.0 937120.0 759600.0 True False 909526.7028049465 507941.94313361496 579727.3268202569 727445.5537948873 525770.728549167 579030.5302011193 670839.359067686 718376.118323438 706179.3327646533 711121.6776737211 1.2790029208225855 0.7142827438410201 0.8152294396603236 1.0229551097001657 0.7393541007906141 0.8142495839745609 0.943353831178639 1.0102014055786461 0.9930499307442917 1.0 19.439736910170744 2.0012287079245317 6.196151538399115 0.9966226703142561 0.8833220931470986 0.07941806440621912 0.15329894085295806 0.34699294626575233 58.12757108894142 0.05928508138014747 0.04054415984329426 100.2833210526883 -2.0012287079245317 -0.11330057716715747 SKS(ph)PASTSSVNGTPGSQLSTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 S(0.007)KS(0.587)PAS(0.13)T(0.26)S(0.014)S(0.002)VNGTPGSQLSTPR 228.44 2.1975e-26 2344200000.0 601760.0 519470.0 478980.0 458020.0 462250.0 644540.0 631290.0 569360.0 757010.0 633660.0 True False 598520.1910218213 536760.2449237542 546416.2206312068 516005.2850381515 521114.7975295954 599984.4668839595 600752.090938009 611848.5343514986 570455.0289143007 593219.2762963804 1.008935843687575 0.9048260337642526 0.9211032791156465 0.8698390387104484 0.8784522323398664 1.011404198848385 1.0126981960004027 1.0314036626918555 0.9616259142416903 1.0 19.17820595248114 2.7261334846784866 24.633216943867442 1.0082751388456253 0.913624313626426 0.5515478671047367 0.038962508636330793 448.8852520373479 889784.2538161634 0.01274873495664692 0.012097706386772862 532.2718331080702 -2.7261334846784866 -0.09465082521919921 SKS(ph)PASVDR ddPTM_BT-474_Trastuzumab_2h_R1 3 SKSPASVDR 9 1 Q13243;Q13243-3 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 1 S(0.11)KS(0.888)PAS(0.001)VDR;S(0.326)KS(0.673)PASVDR;S(0.022)KS(0.751)PAS(0.227)VDR 119.69 0.00047627 3616390000.0 2024200.0 2121540.0 1891550.0 1849560.0 2005850.0 1974890.0 2225440.0 2041760.0 2704580.0 2104480.0 True False 2013301.9321097622 2192154.176401988 2157863.798352661 2083714.1063603393 2261283.1078955904 1838370.5026910093 2117786.96519362 2194126.4990472035 2038072.4985152637 1970170.2846640255 1.0218923449315407 1.1126724392637044 1.0952676604401446 1.0576314761115568 1.147760234482071 0.9331023399353056 1.0749258486328086 1.11367353173808 1.0344651497283228 1.0 20.909888898611545 SKS(ph)PLPPEEEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.006)KS(0.994)PLPPEEEAK;S(0.034)KS(0.966)PLPPEEEAK 145.33 3.6492e-05 1014030000.0 1265970.0 814830.0 704660.0 581340.0 665860.0 1020660.0 855290.0 1003660.0 1429740.0 970360.0 True False 1259154.1581824892 841951.123974863 803870.0029854807 654937.5843938671 750653.324138575 950104.1765752054 813916.3551749112 1078558.2056822143 1077399.7345344601 908430.7940330066 1.3860760406331398 0.9268192244309497 0.8848995523551937 0.7209548472991006 0.8263186684876966 1.0458740311490196 0.8959585700100547 1.1872761389933975 1.1860008947421417 1.0 19.793017085859987 1.7384821548879528 9.482711466933862 1.1374639997566895 0.941001177811754 0.16212307490604683 0.17317543172992236 0.15810490003371677 59.63418634032273 0.08384106373065872 0.04527667003350152 54.762359870671446 -1.7384821548879528 -0.19646282194493558 SKS(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.126)KS(0.873)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.192)KS(0.808)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 203.29 1.7093999999999998e-30 5228850000.0 381660.0 249855.0 235584.0 213168.0 221928.0 352117.0 367859.0 322109.0 600635.0 324663.0 True False 379605.1849664124 258171.27263446274 268752.1794671639 240155.04694339228 250189.21532968694 327775.98058426025 350064.2548121541 346146.40921636036 452616.5523466548 303942.72938202124 1.248936553732437 0.8494076274151339 0.8842198002682709 0.7901325602743564 0.8231459125157349 1.0784136249967122 1.1517441312839019 1.1388540529334192 1.489150779381755 1.0 18.213439982907307 2.430727195619689 2.513416142318483 1.2028501254498372 0.9071286656085893 0.37963271773674345 0.16530673237324106 0.2886756188452967 3.722771891442718 0.06346680125657354 0.05183571005189421 269.6045365248356 -2.430727195619689 -0.29572145984124787 SKS(ph)PRDPDANWDSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPRDPDANWDSPSR 16 2 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.295)KS(0.705)PRDPDANWDSPSR 91.166 0.0040981 728660000.0 225080.0 222600.0 189290.0 194190.0 192120.0 222930.0 230290.0 194320.0 291170.0 248910.0 True False 223868.1942887387 230009.10643545838 215940.38666182515 218774.43408925054 216585.3432155453 207519.37382077318 219149.99290676852 208821.14513696614 219415.05497810716 233024.35069742752 0.9607072978369643 0.9870603898135766 0.926685927953576 0.9388479505874479 0.9294536925746975 0.8905480186928125 0.9404596225710579 0.896134436216547 0.9415971091493718 1.0 17.830121196676057 4.228566495709479 24.901859929534726 0.9267018419308986 0.9738838429000488 0.2171167497160318 0.029202012161368675 191.77786934242894 477847.4116305433 0.00672370131216958 0.014796765574821055 16926.47389273635 -4.228566495709479 0.04718200096915026 SKS(ph)PSGQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPSGQKR 9 2 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 S(0.002)KS(0.499)PS(0.499)GQKR;S(0.002)KS(0.575)PS(0.423)GQKR 103.43 0.0017861 2640530000.0 2450660.0 1977470.0 1891380.0 1784650.0 1701080.0 1519280.0 2232350.0 2242360.0 3627550.0 2559940.0 True False 2437465.9188539246 2043288.8935441433 2157669.863830329 2010586.5070157128 1917702.454908907 1414255.7496004314 2124362.7020948594 2409696.2896733633 2733588.9091796284 2396562.4375250996 1.0170675633934518 0.8525915542823171 0.9003186522686752 0.8389460151482724 0.8001888141455202 0.5901184661230507 0.8864207620180605 1.0054802879084705 1.1406291221031453 1.0 21.192535096234696 1.69262466198345 3.2383263253539507 1.068071116977068 0.830432573452241 0.4576463482245049 0.10538674582178623 0.1875164402200319 4.489815904659694 0.0651931778694922 0.029612566243621713 49.27477637471028 -1.69262466198345 -0.23763854352482705 SKS(ph)PTISDK ddPTM_BT-474_Trastuzumab_2h_R1 4 SKSPTISDK 9 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 S(0.06)KS(0.929)PT(0.011)ISDK;S(0.003)KS(0.935)PT(0.062)ISDK;S(0.001)KS(0.789)PT(0.209)ISDK;S(0.022)KS(0.848)PT(0.13)ISDK 124.38 0.0003218 1942047000.0 1927288.0 1495667.0 1259509.0 1202317.0 1133077.0 1675240.0 1724424.0 1701503.0 2580100.0 1703762.0 True False 1916911.6955498261 1545449.3719452058 1436836.9193515184 1354530.2089236602 1277367.6396764535 1559434.6018907842 1641007.0231806037 1828477.7939171651 1944268.9265687186 1595026.4504959641 1.2018055844489435 0.9689177075807472 0.9008232552536933 0.8492211577447364 0.8008441736369096 0.977685731422126 1.0288274671998965 1.1463620514560187 1.2189571689950092 1.0 20.60514891788043 2.0247962188796285 2.4825565445531668 1.1352940935693343 0.9363052713328668 0.3159863998665876 0.11210884669422227 0.3234069971311433 3.79290271859189 0.05989371549908249 0.03405169201868501 105.87568151646873 -2.0247962188796285 -0.19898882223646752 SKS(ph)PTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 S(0.055)KS(0.93)PT(0.015)LR;S(0.245)KS(0.748)PT(0.007)LR 98.033 0.0070009 709280000.0 403582.0 519330.0 557180.0 472960.0 515047.0 572910.0 560400.0 514160.0 608400.0 595930.0 True False 401409.15935417503 536615.5851083857 635626.1009046218 532836.687506319 580635.1825272582 533306.0801850763 533291.3110641066 552529.2300515783 458467.97214232374 557897.2371986584 0.7195037590968381 0.9618538134421794 1.139324697315691 0.9550803480974835 1.0407565117955642 0.9559217085622069 0.9558952357281705 0.9903781435197022 0.8217785311940351 1.0 19.089639881370992 4.729510578957204 5.157123813557663 0.9850954916423837 0.7090919175787151 0.5203402880988487 0.0751858080469085 0.11387695919635506 10.063502660652532 0.017506849648052398 0.11028017339312074 53642.69380776626 -4.729510578957204 -0.2760035740636686 SKS(ph)PVGNPQLIQFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPVGNPQLIQFSR 15 1 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 S(0.007)KS(0.993)PVGNPQLIQFSR;S(0.013)KS(0.987)PVGNPQLIQFSR 188.32 1.8417e-07 1919180000.0 329580.0 297430.0 344920.0 302530.0 297240.0 386990.0 339250.0 347900.0 479790.0 396910.0 True False 327805.5778997801 307329.77774976817 393481.7379016153 340830.26698090025 335091.7521204909 360238.2921764722 322839.1814391471 373862.06460040464 361552.1833566164 371578.86398825253 0.882196512420964 0.8270916554594031 1.0589454246085839 0.917248799683277 0.9018052009844263 0.9694800406835334 0.8688308532246163 1.0061445922613734 0.973016009242245 1.0 18.503308915644578 7.999999999999999 0.1635449276920034 1.0001441329193632 0.5392059882230794 0.20061925229546573 0.061432555621953065 104.20244633168093 1.093300051663009 0.1699395840834756 11.649657469783785 99999999.99999979 -7.999999999999999 -0.4609381446962838 SKS(ph)YDEGLDDYREDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSYDEGLDDYREDAK 16 2 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 S(0.396)KS(0.604)YDEGLDDYREDAK 174.63 1.984e-09 278720000.0 703510.0 436060.0 416140.0 388770.0 369460.0 600760.0 532600.0 531590.0 973390.0 571220.0 True False 699722.3803273084 450573.99349616363 474728.89484627766 437988.2421385142 416508.5410390141 559230.8752369257 506836.1032704192 571259.9451593251 733511.0772577532 534764.2505539543 1.3084688806375455 0.8425656595956457 0.887734911887833 0.8190305198689118 0.7788638462791018 1.0457521695917908 0.9477748423635186 1.0682463245580935 1.3716531658537758 1.0 19.028543497698255 1.5577767800691222 3.645037561450754 1.1954164835154248 0.9337272998082526 0.24662240727596607 0.16498487427138145 0.22954823763690607 6.891046170590434 0.1020217963119825 0.04184809227995476 36.12241518858015 -1.5577767800691222 -0.2616891837071722 SKSEEAHAEDSVMDHHFR ddPTM_BT-474_Trastuzumab_2h_R1 6 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;;;; 135.09 3.4665e-06 6341880000.0 5607500.0 7408750.0 7517250.0 7930210.0 7814260.0 9065320.0 9014930.0 3742260.0 11095760.0 8083970.0 False True 5577309.843051814 7655345.765066049 8575613.458891686 8934173.772897242 8809359.692252273 8438655.765867908 8578843.395523105 4021526.4440112333 8361358.623566583 7568044.113565088 0.7369552501755309 1.0115355632434118 1.1331347082822383 1.1805129091258175 1.1640206584502104 1.1150378670153787 1.1335614944614611 0.5313825320868548 1.1048242449564405 1.0 22.85148906738786 SKSPAST(ph)SSVNGTPGSQLSTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 S(0.183)KS(0.14)PAS(0.21)T(0.313)S(0.096)S(0.058)VNGTPGSQLSTPR 99.971 0.0014981 394730000.0 193970.0 170690.0 160590.0 196390.0 157620.0 213690.0 191780.0 203350.0 244600.0 211830.0 True False 192925.68707209273 176371.31346571623 183199.67612669722 221252.95386367978 177691.97271306592 198918.11327215272 182502.8687292547 218525.0095903773 184321.60747207818 198310.82804321276 0.9728449473775249 0.8893680451340972 0.9238006715739053 1.11568771129062 0.8960275869270542 1.0030622898150958 0.9202869582566946 1.101931809506437 0.9294581102344736 1.0 17.597403927282233 SKSPLPPEEEAKDEEEDQT(ph)LVNLDTYTSDLHFQVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.06)KS(0.282)PLPPEEEAKDEEEDQT(0.658)LVNLDTYTSDLHFQVSK 94.642 0.021895 3843800000.0 201380.0 130060.0 101950.0 114020.0 104590.0 198970.0 170030.0 163810.0 296650.0 161220.0 True False 200295.7924554215 134388.96847706984 116303.67383471443 128454.92030926596 117908.91654650158 185215.67222500016 161804.99932232345 176034.33401032546 223544.582406345 150930.80157261362 1.3270703552121408 0.8904012108649313 0.7705761357052099 0.851084861213472 0.7812117561025141 1.227156221892136 1.0720475717110545 1.1663247804699055 1.4811064413435617 1.0 17.203527731868206 2.7269920054419123 24.72010410995319 1.186877144848101 0.9096163970377457 0.33273260592711507 0.18724516701034585 741.1642568730867 1583735.917449338 0.060440845616729265 0.05743591905829983 533.3250778690789 -2.7269920054419123 -0.27726074781035537 SKSPS(ph)GQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SKSPSGQKR 9 2 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 S(0.061)KS(0.285)PS(0.654)GQKR;S(0.008)KS(0.428)PS(0.564)GQKR 75.589 0.029796 3053530000.0 3286000.0 2545400.0 2253100.0 2242100.0 2271800.0 1972820.0 2810600.0 2946000.0 4650300.0 3505800.0 True False 3268308.5411089235 2630122.1002732054 2570316.8957037292 2525949.6301123076 2561100.263986445 1836443.5969187561 2674640.540465341 3165845.479484887 3504295.875827499 3282056.8425336103 0.995811071506588 0.8013639697485743 0.7831421023529721 0.7696239740206268 0.7803339146342703 0.5595404604574425 0.8149281590140378 0.9645919103098126 1.0677133407361494 1.0 21.64616879468744 1.6748362235179843 3.269372883485976 1.0278108359571367 0.7758384765185228 0.5222065325848744 0.09966604944474503 0.16229430075826137 4.036918065973591 0.061703854478824156 0.027585274715987068 47.29728628675353 -1.6748362235179843 -0.25197235943861396 SKSPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 SKS(0.051)PS(0.949)PPR;S(0.001)KS(0.152)PS(0.847)PPR;S(0.002)KS(0.211)PS(0.787)PPR;S(0.001)KS(0.06)PS(0.939)PPR 80.706 0.014991999999999997 1277138000.0 761773.0 692352.0 628186.0 642247.0 620638.0 745458.0 790703.0 751998.0 932919.0 728496.0 True False 757671.6988089371 715396.5177843772 716629.128509406 723555.4043489307 699672.5704903686 693926.2430793786 752453.6751112113 808115.909328471 703013.6129241356 682002.7615831961 1.110951071591094 1.048964253639767 1.0507715934255581 1.0609273819790328 1.0259087058037037 1.0174830399051515 1.1033000414316079 1.1849158901534604 1.0308075751660668 1.0 19.379418055496107 2.178055310546335 11.713068218891383 1.1051385299986562 1.0514466758951109 0.0 0.05328201273118192 1.1526258469782642 219.40212151949416 0.019787730099736348 0.014617457593485145 150.67989557226682 -2.178055310546335 -0.05369185410354538 SKTDLLVNDNPDPAPLS(ph)PELQDFK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKTDLLVNDNPDPAPLSPELQDFK 24 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 SKTDLLVNDNPDPAPLS(1)PELQDFK;SKTDLLVNDNPDPAPLS(1)PELQDFK;SKTDLLVNDNPDPAPLS(1)PELQDFK 248.82 2.2933e-38 798840000.0 895770.0 726500.0 672006.0 584081.0 595904.0 838040.0 820477.0 832460.0 1085730.0 831064.0 True False 890947.2738494038 750681.1133214751 766618.6036191375 658025.5947128267 671788.8422002711 780108.2673339655 780787.392983485 894582.3923462277 818166.3895366291 778024.7840103135 1.1451399648955058 0.9648550132967539 0.9853395667778306 0.8457643101303877 0.8634542960669566 1.0026779138228898 1.0035507981621508 1.1498122048697732 1.0515942504034468 1.0 19.569456587487952 2.072687535998757 2.991478618097635 1.082239983293982 0.9575367588943712 0.19624516073282106 0.08507990213673085 0.33991260624389963 6.0226079688347465 0.04011002647975008 0.02546515946745873 118.21906930832861 -2.072687535998757 -0.12470322439961079 SKTPEIYLAYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKTPEIYLAYR 11 1 Q92922;F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 Q92922;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 0 107.97 0.0019392 1158800000.0 987580.0 1148700.0 1053400.0 956790.0 828960.0 1160100.0 1343200.0 1055000.0 1641200.0 1251000.0 False True 982262.9790104539 1186933.7850961857 1201709.5636830614 1077919.5158981124 934523.1423691362 1079905.0175816587 1278224.284477709 1133729.4571814518 1236748.2509532913 1171160.1089650148 0.8387093886578033 1.0134684199115274 1.0260847807948683 0.920386126240842 0.7979465277339398 0.922081455229891 1.0914171979502527 0.9680396800599352 1.0560027117438608 1.0 20.15950688907443 2.2684061308994425 24.438136351683625 1.022299031136325 0.9233597466319264 0.35726160138847507 0.07136611905473146 205.13507666335232 167968.0387249191 0.026109290001035717 0.021841555017688984 185.5265765998482 -2.2684061308994425 -0.09893928450439848 SKTPSS(ph)PCPASK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKTPSSPCPASK 12 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 S(0.029)KT(0.029)PS(0.199)S(0.744)PCPASK;SKTPS(0.194)S(0.806)PCPASK 91.657 0.0049506 410310000.0 442730.0 438650.0 393400.0 345780.0 327760.0 685960.0 672840.0 542540.0 1036120.0 753390.0 True False 440346.3908719272 453250.200080475 448787.30050590105 389555.7125463776 369498.293214278 638541.1997761525 640292.158701595 583027.0897622977 780782.1092966866 705308.0051903703 0.6243320473203376 0.6426273298261203 0.6362997402599571 0.5523199930805157 0.5238821769994606 0.9053366686286275 0.9078192137189387 0.8266276371057668 1.107008716122462 1.0 19.42789388871704 2.726665183444196 21.821221167932514 0.9260376379352162 0.5983128464168004 0.8362971676357003 0.07784779975558326 56.76101655049077 104122.85829219267 0.025527227831131198 0.024307202364303813 532.9238828119596 -2.726665183444196 -0.3277247915184158 SKVDDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SKVDDLR 7 1 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ;;; 89.29799999999999 0.016394 2537330000.0 7872000.0 8374000.0 7717500.0 7134500.0 7072500.0 8550900.0 8955600.0 8090300.0 11374900.0 8823700.0 False True 7829618.0266614305 8652723.527810106 8804056.918287488 8037726.968483244 7973140.953008242 7959796.409653469 8522383.414285714 8694039.267710997 8571708.310850961 8260563.911650362 0.9478309362898163 1.0474737100704055 1.0657936930759175 0.9730240035001922 0.9652054070743583 0.9635899552120524 1.0316951125172087 1.0524752741697547 1.0376662419815883 1.0 22.97780884065074 2.060782671649956 12.81151179060147 1.0374291150834876 0.997296290139187 0.175482217317128 0.03746861222467228 1.589845875376929 332.18664471695735 0.01494846608366162 0.011039536687351293 115.02246529102953 -2.060782671649956 -0.040132824944300594 SKVDEAVAVLQAHHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SKVDEAVAVLQAHHAK 16 1 B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y5F5;H0Y6X6;H0YER0 B1ANR0 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 112.5 0.0004736000000000001 821570000.0 2116700.0 2002100.0 1758000.0 1766200.0 1832400.0 2222300.0 2151000.0 1425500.0 3191500.0 2167000.0 False True 2105303.9223874765 2068738.6882049923 2005511.1191900733 1989800.7389074329 2065745.2785142856 2068677.6317315067 2046947.9123820378 1531878.048542329 2404997.588908988 2028700.2047379583 1.0377599989740294 1.0197360277154435 0.9885694862682384 0.9808254242102027 1.0182604968885052 1.0197059313644188 1.0089947778392603 0.7551032158249315 1.1854869355719493 1.0 20.95212425300228 1.920647651557867 24.99997563767999 0.9352518559395077 1.0096221128437861 0.0 0.10079993442672001 248.35023131736114 78240.68573740883 0.04009142989841572 0.02587436126506117 83.3005083146751 -1.920647651557867 0.07437025690427845 SKVDEAVAVLQAHQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKVDEAVAVLQAHQAK 16 1 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;Q9H361;H0YB75;H0YAS6;H0YAS7;H0YC10 P11940-2 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 ; 225.13 4.3019e-15 3830300000.0 9388900.0 7542500.0 6910500.0 6371800.0 6681800.0 8862600.0 8122500.0 8173500.0 11880500.0 9402100.0 False True 9338351.205604853 7793547.552962466 7883438.332857226 7178469.22668463 7532687.623868564 8249949.322316347 7729583.644036773 8783448.074192017 8952709.96554385 8802049.928457202 1.0609291337252902 0.8854241473643284 0.8956366297548385 0.8155451610739558 0.8557878772665485 0.9372759061095639 0.8781572141560883 0.997886645222831 1.0171164715391536 1.0 23.069408124575528 1.6670754129781966 5.128747154309344 1.0080990107818428 0.899164877181209 0.3617978157134748 0.06113597949806245 0.15943443048180192 9.375147907327474 0.03316877142479872 0.016059663732600645 46.45959428880977 -1.6670754129781966 -0.10893413360063386 SKVGS(ph)TENIK ddPTM_BT-474_Trastuzumab_2h_R1 5 SKVGSTENIK 10 1 E7EVA0;H0Y2V1;F8W9U4;H7C4C5;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 SKVGS(0.957)T(0.043)ENIK;SKVGS(0.5)T(0.5)ENIK;SKVGS(0.955)T(0.045)ENIK;SKVGS(0.5)T(0.5)ENIK;SKVGS(0.565)T(0.435)ENIK 202.61 5.8014e-07 8476810000.0 8133220.0 6323670.0 5386710.0 5294700.0 5541530.0 7919380.0 8152520.0 7856770.0 13357900.0 8235170.0 True False 8089431.647205695 6534149.533210756 6145111.945877343 5965008.477122183 6247210.998278372 7371931.900815294 7758151.4619492395 8443082.073269684 10066024.531689588 7709594.400116255 1.0492681232470171 0.84753479808383 0.7970733124150707 0.7737123598917519 0.8103164283433859 0.956202300435433 1.0062982641255749 1.095139592965146 1.305649040569216 1.0 22.87822353162621 2.078740400836644 1.5588879458842086 1.1508546644061108 0.8505767948267897 0.5808073606805705 0.10146503572855 0.26534458937388467 1.2199483485130054 0.06327975701665899 0.03276967587560083 119.87825176943619 -2.078740400836644 -0.3002778695793211 SKVGST(ph)ENIK ddPTM_BT-474_Trastuzumab_2h_R1 3 SKVGSTENIK 10 1 E7EVA0;H0Y2V1;F8W9U4;H7C4C5;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 SKVGS(0.343)T(0.657)ENIK;SKVGS(0.221)T(0.779)ENIK;SKVGS(0.282)T(0.718)ENIK 208.08 7.6592e-07 7140240000.0 6436270.0 4840490.0 4631160.0 4349910.0 4361820.0 6442930.0 6692220.0 6466280.0 11116500.0 6992030.0 True False 6401617.83745682 5001602.783512004 5283187.073235658 4900608.15999368 4917271.922467363 5997545.414125843 6368491.751836966 6948826.648704515 8376987.528468353 6545792.659221946 0.977974428878066 0.7640942883312333 0.8071118882435904 0.7486653511839438 0.7512110722816334 0.9162443307268963 0.9729137605458381 1.0615714567302648 1.2797514318860304 1.0 22.64213647444902 2.0425481673280435 1.5069307368219163 1.1334623984744723 0.8068239390136831 0.6697351267694659 0.09200401687132623 0.22241228320881043 0.9473725893956377 0.05825679852684547 0.02897090663561624 110.29305524006891 -2.0425481673280435 -0.3266384594607892 SKWDEEWDKNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SKWDEEWDKNK 11 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ; 147.26 1.9901e-05 1537820000.0 2752740.0 2054380.0 2026710.0 1840500.0 1715620.0 2625260.0 2815710.0 2541090.0 4905600.0 2744200.0 False True 2737919.5536981663 2122758.7964010625 2312053.151520885 2073507.1112892812 1934094.037723575 2443781.9553973125 2679503.350243247 2730719.039193569 3696680.61167223 2569062.8065721756 1.0657269828880873 0.82627750126257 0.8999597618268388 0.8071064304013261 0.7528403092270755 0.9512348040482429 1.0429886507206219 1.0629242041914446 1.4389218520525784 1.0 21.292810729949284 1.9159789482311365 1.5936741204489373 1.200255132776526 0.869607009547197 0.4940412172454488 0.13141502653775194 0.2971280827379741 1.4080516232204765 0.0867915834546477 0.03936415646074171 82.40981671312271 -1.9159789482311365 -0.330648123229329 SKYDEER ddPTM_BT-474_Trastuzumab_2h_R1 3 SKYDEER 7 1 Q15075 Q15075 EEA1 Early endosome antigen 1 0 ;; 107.9 0.0067258 635650000.0 1021120.0 1025390.0 887330.0 863790.0 868060.0 985780.0 1069290.0 911570.0 1363900.0 1023640.0 False True 1015622.4033770979 1059519.4862886546 1012258.3511893785 973145.7254336165 978602.2956052775 917635.3488765171 1017564.3576155223 979595.9822586692 1027785.1203236625 958310.4188177057 1.0598052399660849 1.1056119869757999 1.0562948407033181 1.0154806901027056 1.0211746386026006 0.9575554338735349 1.0618316754511756 1.0222115538170022 1.0724970741648303 1.0 19.87013352825659 3.9486531134478597 4.010451950479194 1.0225301031725273 1.0829143284543925 0.38369528536400765 0.03148893567198239 0.21438351016333407 7.1035713031432 0.00806075376901171 0.016269954356683713 8884.911646584955 -3.9486531134478597 0.060384225281865156 SKYNDDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SKYNDDIR 8 1 Q9Y3D6 Q9Y3D6 FIS1 Mitochondrial fission 1 protein 0 60.43600000000001 0.08418099999999999 416420000.0 1237300.0 1245400.0 1138400.0 1025900.0 940390.0 1296000.0 1283500.0 1114800.0 1604600.0 1199200.0 False True 1230638.5142769543 1286852.3861398026 1298676.824849818 1155778.8348121035 1060143.0923717802 1206410.5704558487 1221412.2015538553 1197992.0368396984 1209167.8305384184 1122666.0293132272 1.0961750708977787 1.1462468379193889 1.1567793011820822 1.0294947959894472 0.9443085162381778 1.0745943485916742 1.087956854186667 1.0670956504959457 1.0770503417459842 1.0 20.098497387969108 3.735713143590162 24.76020610314455 1.0446184134696856 1.1343850489740592 0.490383456320142 0.04326389327382874 200.03867584444598 1739440.7234464476 0.01225438785747316 0.0199582144325799 5441.4312144143005 -3.735713143590162 0.08976663550437358 SLAALDALNT(ph)DDENDEEEYEAWK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLAALDALNTDDENDEEEYEAWK 23 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK 212.77 9.1289e-25 1168502000.0 330168.0 263325.0 233610.0 234332.0 244035.0 307773.0 306040.0 270648.0 387670.0 296105.0 True False 328390.4121731135 272089.61344167613 266500.2574254794 263998.40717339877 275111.4107412321 286497.3769297123 291235.6760136677 290845.12808269716 292133.92301185883 277207.32539175503 1.1846382908858035 0.9815383235531513 0.9613752343984988 0.9523500390918993 0.9924391801422963 1.033513008809664 1.050605988142945 1.0491971223042857 1.0538463317988052 1.0 18.080605856611502 2.5701634714971076 5.131540702692581 1.043390707809642 1.0064112923845958 0.02236632458112975 0.06294047977177679 0.6786468526183139 28.62931892277756 0.020980496154106795 0.019563334554798435 371.67510389345466 -2.5701634714971076 -0.036979415425046236 SLADELALVDVLEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLADELALVDVLEDK 15 0 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 ; 146.07 9.1868e-06 40873000.0 119084.0 82524.0 73558.0 67436.0 74183.0 94174.0 86748.0 89554.0 137755.0 98361.0 False True 118442.86497547622 85270.76145318849 83914.32702240229 75973.39068563106 83629.76533291064 87663.97304175077 82551.66783045881 96236.9742259978 103807.12607242908 92083.51676891129 1.2862547949022753 0.9260154742697351 0.9112849939581474 0.8250487530389453 0.9081947374228136 0.9520050506080082 0.8964869145650336 1.0451053304959002 1.1273149605367359 1.0 16.490655312152775 1.6028397546213469 5.691480174351098 1.070259620329412 0.9479221074388926 0.12288362194729185 0.11996866901418937 0.2539685742128961 17.470059679382153 0.06543088251516953 0.03079163301880308 40.07188336636737 -1.6028397546213469 -0.1223375128905193 SLAEDFAEQPIKDAVITVPVFFNQAER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLAEDFAEQPIKDAVITVPVFFNQAER 27 1 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2;J3QL06;J3KTF1 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ; 278.97 4.810599999999998e-61 535490000.0 426880.0 552280.0 481370.0 503430.0 529840.0 519910.0 588030.0 590560.0 741430.0 549220.0 False True 424581.72551082645 570662.3059396901 549142.7118569539 567164.1863821597 597311.9833922782 483969.8454364966 559584.7424072567 634630.5860029171 558714.5111529962 514168.3093891013 0.825764088835589 1.109874520694811 1.0680213109777357 1.1030710684134237 1.1617051702427215 0.9412673566200834 1.088329895461889 1.2342856889739873 1.0866373927572892 1.0 18.971881167268585 4.7399458696198415 24.55582116402312 1.099172098476444 0.8257639735198414 0.5106856033699654 0.0763608994577791 76.18446595603626 1350309.7217189055 0.018978085494193532 0.11884316537282218 54947.23834578848 -4.7399458696198415 -0.2734081249566025 SLAGSSGPGASSGTSGDHGELVVR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692;P29692-2;E9PRY8;E9PK01;E9PQ49;A0A087X1X7;E9PI39;E9PPR1;E9PL12;E9PMW7;H0YCK7;E9PIZ1 P29692 EEF1D Elongation factor 1-delta 0 ;;;; 490.42 4.748499999999995e-257 5437800000.0 664340.0 981910.0 1044820.0 1142410.0 1152850.0 1078830.0 1124290.0 1024780.0 974010.0 1143950.0 False True 660763.2672551123 1014592.2807728702 1191921.5742617592 1287038.988866065 1299658.6140226994 1004253.0213926557 1069903.7974951179 1101254.287327401 733978.2865653274 1070942.1316151307 0.6169925038420039 0.9473829171728663 1.1129654339625004 1.2017820112511868 1.2135656779723776 0.9377285585712287 0.999030447967859 1.0283041957332983 0.6853575603178347 1.0 20.030449095455825 -3.0004881633453437 10.4239346701566 0.9999913949053753 0.9924254025735603 0.0 0.18679199408689603 0.0 0.0 0.0 0.0416852885432214 0.0009988765938517459 3.0004881633453437 -0.007565992331814986 SLAKPETDKEQDSEMEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLAKPETDKEQDSEMEK 17 2 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 0 ;;; 130.27 1.7344000000000002e-05 2935330000.0 2025930.0 1227600.0 1057398.0 1019436.0 937627.0 1853480.0 1744140.0 1672870.0 3182720.0 1597170.0 False True 2015022.6179819852 1268459.9239001286 1206270.4473318215 1148496.4930748725 1057028.2406993657 1725353.29022261 1659769.2849381703 1797708.0540617364 2398381.3022630103 1495237.2431939663 1.347627359573862 0.8483335535373502 0.8067418416860158 0.7681031878403302 0.7069301179533588 1.1538993548188343 1.1100374154624106 1.202289511075623 1.604013886879813 1.0 20.511942978446367 2.3186188645966945 1.8203115840633828 1.2668695517293203 0.8863396002928136 0.33194697641419113 0.22119442123117877 0.3867745526006346 2.60354870388963 0.10589945180804754 0.07278123959483909 208.26623432587598 -2.3186188645966945 -0.3805299514365067 SLALDIDRDAEDQNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLALDIDRDAEDQNR 15 1 H7BXT7;A0A0C4DH16;B8ZZS0;Q9NYM9;E9PQJ6 H7BXT7 BET1L BET1-like protein 0 91.076 0.0052602 207390000.0 69992.0 123320.0 123930.0 128440.0 149210.0 136810.0 103990.0 103250.0 121830.0 128710.0 False True 69615.17084884224 127424.63165148582 141378.26678112938 144700.49083075012 168211.0090630412 127352.64671609916 98959.60641962262 110955.03929287662 91806.62893836173 120495.61760582493 0.5777402716551324 1.0575042825899914 1.1733062960315908 1.2008776228203264 1.3959927539714079 1.0569068755073359 0.8212714153916149 0.9208221966697725 0.7619084474813602 1.0 16.878621151403955 2.3289696826101918 5.736673596623444 0.873907393375199 1.1036849174231336 0.18597302644233893 0.2031195671941576 0.3322306336772741 16.82446199298679 0.07410863225697453 0.06136408136426532 213.2896013955679 -2.3289696826101918 0.2297775240479346 SLANGT(ph)PPMGAASK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLANGTPPMGAASK 14 0 A0A1B0GV68 A0A1B0GV68 1 SLANGT(1)PPMGAASK;SLANGT(1)PPMGAASK 155.0 2.6248000000000007e-05 211320000.0 783960.0 954660.0 1021630.0 836430.0 1003960.0 1645420.0 1154980.0 961560.0 1526930.0 1253510.0 True False 779739.2464661446 986435.2809958444 1165466.6238328526 942321.9522389 1131808.355062872 1531675.9883020532 1099109.2049479322 1033316.4899027459 1150638.561313739 1173509.918616095 0.6644504951314607 0.8405853801041022 0.9931459507451561 0.8029944504859132 0.9644642427885047 1.3052092393972594 0.936599842499923 0.8805349435148555 0.9805102991124882 1.0 20.16239860503083 5.380431875731469 0.8242122014361248 0.9890019852597727 6.130600060761771e-10 0.40892698158172813 0.12157736718450712 6.803436295348678 1.6764858216113558 0.04354288685589035 7.8605713514933955 240121.95784164773 -5.380431875731469 -0.9890019846467126 SLAPDRS(ph)DDEHDPLDNTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLAPDRSDDEHDPLDNTSR 19 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 SLAPDRS(1)DDEHDPLDNTSR 119.02 4.1117e-05 174170000.0 69110.0 80415.0 74585.0 54085.0 58791.0 83361.0 68756.0 62552.0 76571.0 56392.0 True False 68737.91943884281 83091.56466310604 85085.91969555829 60932.155454539985 66277.68536844231 77598.45028068674 65430.00960657345 67219.94787261997 57701.10304883286 52793.014280379844 1.3020267998675117 1.5739121131029346 1.6116889867980104 1.1541707986388834 1.255425291998793 1.469862089490989 1.239368702440051 1.273273534176695 1.092968526903702 1.0 15.688059420310912 1.5786063175101313 0.2877636673727593 0.9453334796401272 1.5156411868897488 0.5014852485503114 0.13423717384232073 1.3662566216635839 0.4281724800867095 0.28490398644109516 0.2752416401684901 37.897129650500084 -1.5786063175101313 0.5703077072496217 SLAPDRS(ph)DDEHDPLDNTSRPR ddPTM_BT-474_Trastuzumab_2h_R1 9 SLAPDRSDDEHDPLDNTSRPR 21 2 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(0.999)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(0.809)DDEHDPLDNT(0.052)S(0.138)RPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR 239.25 3.3519999999999996e-30 28370880000.0 4591740.0 5524400.0 4963550.0 5343340.0 5053030.0 5104890.0 5236740.0 4638020.0 5865020.0 5293370.0 True False 4567018.582030269 5708276.31442968 5662374.696049986 6019806.29613501 5696503.418844716 4752000.969918482 4983418.879910512 4984132.603788354 4419664.408241576 4955542.59471794 0.9215980883502455 1.151897336229956 1.1426346535867637 1.2147622951624828 1.1495216335980156 0.958926470530914 1.0056252740562224 1.0057692994306795 0.8918628634031818 1.0 22.240611599662664 2.737347785776887 24.98789253217245 0.9783007119404856 1.1250297975602652 0.4558819467219656 0.07803006330838397 100.77668374741566 2076278.6102304782 0.024819777212510143 0.0246398156151957 546.195082490963 -2.737347785776887 0.1467290856197796 SLAVPTIEELEDEEERNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLAVPTIEELEDEEERNHR 19 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 0 155.03 1.7977e-08 33293000.0 32032.0 39671.0 39649.0 43822.0 37906.0 38327.0 42110.0 34909.0 49922.0 45390.0 False True 31859.543271089748 40991.42525337407 45231.23456471399 49369.860706829095 42733.1044135356 35677.54470205346 40072.97842417835 37514.086844310215 37619.39202052777 42493.1713396659 0.7497567789521505 0.964659119596235 1.0644353701718703 1.1618304577033072 1.005646391321368 0.8396065432929858 0.9430451331546443 0.8828262438791457 0.885304410909227 1.0 15.374943398071778 2.765642580903524 23.27108748177312 0.9041100170860145 1.001661662203613 0.11773671189642732 0.10493517194149105 598.9026700706648 514625.28747417644 0.03344990174779308 0.035465722136344774 582.9651335543758 -2.765642580903524 0.0975516451175985 SLAYLTAATHGLDEEAESLKETFDPEKETIPDIDPNAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLAYLTAATHGLDEEAESLKETFDPEKETIPDIDPNAK 38 2 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITI7 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 71.207 0.0022034000000000003 234000000.0 112800.0 72796.0 73191.0 73621.0 76790.0 114160.0 101660.0 101110.0 188860.0 90538.0 False True 112192.69733325808 75218.97085388876 83495.65661242357 82941.41105146873 86568.75133001096 106268.38790373414 96742.31742108692 108655.34162617681 142317.98359434464 84759.78732651846 1.3236547763040079 0.8874369937258597 0.9850857257436819 0.9785467102690474 1.021342243303701 1.2537594920378754 1.1413704596545104 1.2819208855209367 1.6790743356409787 1.0 16.371092347352004 2.311771434251267 1.2833684337557256 1.333142414781718 1.0251894971254774 0.2566221356086059 0.19329911309350495 0.5466441481116311 1.7746319079237227 0.11109537174795815 0.06856242000322556 205.00829524232225 -2.311771434251267 -0.30795291765624055 SLCEQVSHHPPAAAHHAESK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLCEQVSHHPPAAAHHAESK 20 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 26.956 0.096188 32963000.0 14078.0 23238.0 24030.0 26009.0 22292.0 16698.0 17651.0 10352.0 10355.0 18514.0 False True 14002.205612212847 24011.462782332357 27413.215127495703 29301.736733237158 25130.754064964258 15543.706562863992 16797.153696631955 11124.51880639088 7803.148999891128 17332.42066936715 0.8078620914711564 1.3853496427518381 1.5816149198331584 1.6905738264836976 1.4499275400913658 0.8967995215080093 0.9691175870384214 0.6418329567809332 0.4502053780452145 1.0 14.081185536864119 2.522743441015003 2.0975062364695547 0.718543455177685 1.4118605989480977 0.5532263198440933 0.264754476571705 0.23591627021941508 2.0857222114860643 0.10887250144234684 0.09256740527399782 333.22949964738467 -2.522743441015003 0.6933171437704126 SLCLS(ph)PSEASQMK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLCLSPSEASQMK 13 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 SLCLS(0.996)PS(0.004)EASQMK;SLCLS(0.989)PS(0.01)EAS(0.001)QMK;SLCLS(0.964)PS(0.036)EASQMK;SLCLS(0.965)PS(0.035)EASQMK 180.11 3.7428e-06 431874000.0 545990.0 472820.0 425760.0 422504.0 438984.0 564240.0 535870.0 519840.0 707250.0 605570.0 True False 543050.4505051919 488557.5278742746 485703.3072277394 475992.96307968907 494886.0103379812 525235.4168780915 509947.92087780696 558633.100494033 532957.7141644622 566922.004145439 0.957892702231182 0.861772032663843 0.856737441263854 0.8396092577094205 0.8729349129497228 0.9264685671705677 0.8995027837144669 0.9853791110756046 0.940090012854284 1.0 19.112790740516758 1.9915895666659624 1.1539658174478413 0.981328100773877 0.8749149589408631 0.5591155116248607 0.035565981536298405 0.3443426472309389 0.8466160357070384 0.026919495105232484 0.012439798039717117 98.08205728680875 -1.9915895666659624 -0.10641314183301387 SLDADEFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLDADEFR 8 0 Q13938-4;Q13938;K7ES72;A0A499FJ41;Q13938-3 Q13938-4 CAPS Calcyphosin 0 ;;; 159.46 0.00083534 1973930000.0 4083670.0 4108630.0 3567100.0 3632600.0 3188780.0 3814180.0 3811540.0 3231590.0 4228400.0 3789790.0 False True 4061683.9744583857 4245383.265830722 4069316.6742109796 4092486.7875411315 3594852.231620168 3550514.7142139524 3627161.2487032167 3472747.655481521 3186367.4776571393 3547922.357597539 1.144806330319116 1.1965829118947984 1.1469576456477195 1.1534882601862635 1.0132274241915504 1.0007306689253956 1.0223338853331994 0.9788116270484221 0.8980939142689623 1.0 21.758543007504684 3.199928053035789 2.818593031343717 0.9828688016001581 1.166185650344442 0.8679742281890156 0.033592200192696486 0.09070103093104777 1.4735239502759858 0.010440981950104424 0.013545812394940432 1584.6306544508918 -3.199928053035789 0.183316848744284 SLDAFPEDFCR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDAFPEDFCR 11 0 E9PS17;Q96KG9-2;Q96KG9;Q96KG9-3;E9PK59;Q96KG9-4;E9PPN3;Q96KG9-5;Q96KG9-6 E9PS17 SCYL1 N-terminal kinase-like protein 0 77.66199999999998 0.074451 58175000.0 21371.0 28678.0 25810.0 27325.0 24645.0 27799.0 29949.0 26421.0 22778.0 27840.0 False True 21255.940910541325 29632.52989378292 29443.823655458367 30784.34219830462 27783.394667640598 25877.320561807188 28500.252453709727 28392.669183119517 17164.66710956254 26063.227364976843 0.8155529095795927 1.136947833774509 1.1297075087110773 1.1811408375185302 1.0659997811696673 0.9928670843189792 1.0935043482760582 1.0893765682017156 0.6585779600199482 1.0 14.669728120982613 1.2644011375523936 24.999012616477536 0.8292888966769937 1.071758656508808 0.36599284940211274 0.12269409987556594 180.52730513035573 174648.84095887796 0.07675086138182163 0.028006861097912315 18.382354517879023 -1.2644011375523936 0.2424697598318143 SLDEMEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLDEMEK 7 0 P23246;P23246-2;H0Y9K7 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ;;;; 157.21 0.0034697 944153000.0 1869509.0 1909960.0 1677310.0 1657486.0 1596632.0 1939080.0 1940420.0 1879770.0 2578520.0 1926080.0 False True 1859443.771265978 1973531.8640047985 1913460.6685601235 1867323.5576541298 1799953.6212207056 1805035.963703336 1846554.471475757 2020047.9826786518 1943078.2963978066 1803155.925399951 1.031216294205695 1.0944876348211856 1.0611731584642112 1.0355862914295368 0.9982240558710778 1.0010426376759225 1.0240681049622373 1.120284693200114 1.0775985975626705 1.0 20.782092726535215 1.7687514007444325 24.999999999998124 1.078609359098273 1.0356887562863608 0.09301083240077546 0.03844874694946929 40.5519727573462 33597.96665997297 0.018426835572379886 0.010221210849509636 58.71531575540641 -1.7687514007444325 -0.042920602811912234 SLDFLIELLHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDFLIELLHK 11 0 E7EX90;Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2;Q6AWB1 E7EX90 DCTN1;DKFZp686E0752 Dynactin subunit 1 0 ; 174.77 1.0616e-05 460500000.0 887130.0 906700.0 835480.0 807990.0 793470.0 1001090.0 1002850.0 914480.0 1241140.0 1042120.0 False True 882353.790649409 936878.9613882761 953108.321877657 910281.4511549195 894513.7012348449 931887.0046123791 954338.3142409688 982723.1412353483 935277.6774239383 975611.0093961796 0.9044114735805525 0.9602997017921361 0.9769347749238194 0.9330372888250886 0.9168753659191207 0.9551829526699767 0.9781955154766275 1.0072899257702828 0.9586583878371727 1.0 19.895946512923157 2.2585226812204064 3.1451398010277902 0.9898464761072481 0.9411169187380983 0.4966686436162958 0.022600226097210546 0.21310795656485695 4.37842916468069 0.009135670306126449 0.006862706065347697 181.35213853499565 -2.2585226812204064 -0.048729557369149745 SLDFYTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLDFYTR 7 0 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 ;;; 139.68 0.0062246 2403580000.0 1204850.0 1306920.0 1229920.0 1138160.0 1042320.0 1376770.0 1305220.0 1111210.0 1511380.0 1335320.0 False True 1198363.221471419 1350420.0421501761 1403082.0453437183 1282250.9393018254 1175053.2736853375 1281597.130467976 1242081.5221753998 1194134.132810048 1138920.6504544138 1250098.7343750305 0.9586148585859693 1.0802507074173624 1.12237698252304 1.025719732404072 0.9399683731963693 1.0251967266479096 0.993586736807922 0.9552318548718784 0.9110645576517613 1.0 20.253610614585845 3.4410179646845416 6.63727743329721 0.9723026676474367 1.0593175598234343 0.3765354424713877 0.048654606529541164 0.18222250858005398 23.189380187469713 0.013609323864241882 0.018682278279370607 2760.69205047823 -3.4410179646845416 0.08701489217599767 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 2 A0A2R8Y4N6;A0A2R8YD30;A0A2U3TZH6;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8YCW8;A0A2R8Y6G5;A0A3B3ITP0;A0A2R8YFR9;Q4VB86;A0A3B3IUD6;A0A2R8Y7Y3;A0A2R8Y7N0;A0A2R8Y420;P11171-3;P11171-7;P11171-5;P11171-4;P11171-6;P11171-2;P11171 A0A2R8Y4N6 EPB41 Protein 4.1 1 SLDGAAAVDS(0.051)ADRS(0.949)PRPTSAPAITQGQVAEGGVLDASAK;SLDGAAAVDSADRS(1)PRPTSAPAITQGQVAEGGVLDASAK 298.64 5.999499999999998e-93 892170000.0 301869.0 291359.0 278381.0 265866.0 281210.0 374334.0 313270.0 315536.0 423443.0 349469.0 True False 300243.7708447987 301056.7081847655 317574.62506897165 299524.6083401452 317020.4266377445 348457.1716674529 298115.933292385 339082.8985793424 319091.1464954998 327165.58922453644 0.917711949953083 0.9201967385944975 0.9706846793444942 0.9155137893630342 0.9689907407107253 1.0650789176617956 0.9112080949558102 1.0364259254252655 0.9753200122660362 1.0 18.319661490241607 3.0074064602997868 11.526413876811306 0.997800461923123 0.9342070770456499 0.37754613743076093 0.0402184399377925 0.3051978974948617 452.75391955433855 0.010994544242887325 0.012922584322397563 1017.2002548211574 -3.0074064602997868 -0.06359338487747312 SLDGAEFSRPAS(ph)VSENHDAGPDGDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDGAEFSRPASVSENHDAGPDGDKR 26 2 Q9H4G0-2;A0A1B0GTW6;Q9H4G0-3;A0A0C4DH22;Q9H4G0;Q9H4G0-4;H7C2K6 Q9H4G0-2 EPB41L1 Band 4.1-like protein 1 1 SLDGAEFS(0.006)RPAS(0.994)VS(0.001)ENHDAGPDGDKR 123.19 6.760800000000001e-05 296410000.0 56385.0 55605.0 54477.0 43982.0 50091.0 66653.0 54101.0 48971.0 70830.0 51931.0 True False 56081.42942496244 57455.7788110677 62146.88807742754 49550.116690423965 56469.79193738219 62045.434994285155 51483.92794411 52625.46468969935 53374.89557337409 48616.71911963404 1.153542041513734 1.1818111104882019 1.2783027979428025 1.019199106556184 1.1615302916353452 1.2762160038320618 1.0589757778064053 1.082456110627308 1.0978711961626064 1.0 15.569164916487813 1.4870455455231388 0.7319590089531783 1.0088100713295463 1.1761920864991697 0.33532820895718807 0.0752130717692762 0.7089862364449827 0.8156899760490046 0.07065230031893904 0.030851003615464678 30.693438611010652 -1.4870455455231388 0.16738201516962348 SLDGALYDDEDDDDIER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDGALYDDEDDDDIER 17 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 0 ; 194.12 2.1371e-10 281290000.0 243466.0 286600.0 225953.0 268390.0 273630.0 314060.0 283940.0 241200.0 333850.0 284290.0 False True 242155.20610761526 296139.30774664175 257765.21838131652 302368.1464813536 308475.15856792405 292349.77141771896 270204.73744386574 259199.56878878284 251577.1408608066 266146.3688070858 0.9098572608485959 1.1126933990269696 0.9685092437543482 1.1360972078507783 1.15904327363384 1.0984548567319605 1.0152486342570453 0.973898572994102 0.9452585883039434 1.0 18.02186035728955 1.9883079087875892 3.5072470935811415 0.9725632144435125 1.0693462965557556 0.23960628381476734 0.07246475843401125 0.33158433301622037 8.319370408578944 0.03400603259883726 0.020486378297940765 97.34371326584774 -1.9883079087875892 0.09678308211224318 SLDGIPFTVDAGGLIHCIEDFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDGIPFTVDAGGLIHCIEDFHK 23 0 Q93052;A0A087WZF1 Q93052 LPP Lipoma-preferred partner 0 ; 271.54 7.415899999999997e-52 387080000.0 254245.0 258073.0 192194.0 220226.0 198073.0 239602.0 247081.0 182328.0 338990.0 234754.0 False True 252876.17316927479 266662.803796577 219253.2446198049 248106.5890197196 223296.42247934963 223038.87770243996 235128.74808891976 195934.24120282425 255450.45673327817 219771.79873698897 1.1506306751936963 1.213362248154981 0.9976404883603621 1.1289282357680486 1.0160376525223727 1.0148657788862203 1.0698767969329366 0.8915349573004486 1.1623441142190745 1.0 17.745646745016053 4.250977799094305 0.7519072013759214 1.0116562483608587 1.2280953049059493 0.28467788598989696 0.07874784639500759 1.7103227887380819 1.1500162334139736 0.030834581300554866 0.27911920607633717 17822.876555109477 -4.250977799094305 0.21643905654509066 SLDGIPFTVDAGGLIHCIEDFHKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDGIPFTVDAGGLIHCIEDFHKK 24 1 Q93052;A0A087WZF1 Q93052 LPP Lipoma-preferred partner 0 ; 92.29 0.0035302 301580000.0 206700.0 265543.0 250234.0 244989.0 223581.0 276992.0 244931.0 218399.0 426112.0 296676.0 False True 205587.150166529 274381.43823086657 285464.7721270812 276004.58228071174 252052.71508158883 257844.1950090323 233082.75180271693 234697.04238765084 321102.4072082678 277741.88368289784 0.7402093895253156 0.987900832933545 1.0278059914542839 0.9937449066768425 0.907507041211549 0.9283590634224147 0.8392063476779436 0.8450185448285072 1.1561180580703316 1.0 18.08338522748585 1.2409006737144748 24.999995778825525 1.0780590388621016 0.9119034832451702 0.37109026786888033 0.08810274036056974 63.920880500491386 682962.3707904941 0.06760138932989557 0.02202457125049207 17.41408555127041 -1.2409006737144748 -0.1661555556169314 SLDLFNCEVTNLNDYR ddPTM_BT-474_Trastuzumab_2h_R1 8 SLDLFNCEVTNLNDYR 16 0 Q92688;Q92688-2;P39687;H0YN26 Q92688;P39687 ANP32B;ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ;;;;;;; 365.6 8.556899999999998e-104 2585233000.0 583882.0 674795.0 608209.0 627024.0 618422.0 648953.0 646525.0 626208.0 745524.0 704412.0 False True 580738.4441873891 697255.143652809 693839.5405526024 706405.1741097815 697174.3760256292 604092.406581045 615250.1157846561 672938.8207797937 561799.5997097866 659455.823082546 0.8806328246110526 1.0573189579152924 1.0521395312112551 1.0711940806099436 1.0571964817397055 0.9160468153231077 0.9329663856916819 1.0204456420359185 0.8519139266732421 1.0 19.330916491071406 2.741824885748579 24.857140028047326 0.9508156659784233 1.0297832339065358 0.2565276706981051 0.0667432905243094 379.30842371425905 2888408.790418681 0.020580310034550034 0.02100025578149082 551.8548779925133 -2.741824885748579 0.07896756792811255 SLDLFNCEVTNLNDYRENVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDLFNCEVTNLNDYRENVFK 21 1 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 ; 208.34 2.8963e-22 813650000.0 146356.0 213423.0 180566.0 194497.0 193872.0 224698.0 272030.0 192899.0 352210.0 263360.0 False True 145568.03555768012 220526.65553807202 205988.1232921924 219120.30025777343 218560.45003062772 209165.1561421974 258870.86964448413 207294.10290127457 265412.56487220206 246552.1393261602 0.5904148143087508 0.8944422714837633 0.8354748973388293 0.8887381827496634 0.886467465372496 0.8483607431428364 1.0499639968730008 0.8407718686514752 1.07649670206711 1.0 17.91153324555551 5.292260072081067 1.031090921926721 0.9300224788872745 9.642272690999732e-59 0.5981201194938448 0.0825029506673689 3.499540452620747 1.3554194498584613 0.022946323949848992 4.711084262936669 196001.80556204208 -5.292260072081067 -0.9300224788872745 SLDLLAALPT(ph)PPHNQTEDVR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLDLLAALPTPPHNQTEDVR 20 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 SLDLLAALPT(0.999)PPHNQT(0.001)EDVR;SLDLLAALPT(1)PPHNQTEDVR;SLDLLAALPT(1)PPHNQTEDVR;SLDLLAALPT(1)PPHNQTEDVR;SLDLLAALPT(1)PPHNQTEDVR;SLDLLAALPT(1)PPHNQTEDVR 215.42 4.4024e-24 1066691000.0 608976.0 711090.0 661016.0 721275.0 671746.0 691754.0 694387.0 663857.0 799814.0 718444.0 True False 605697.3408795948 734758.2007870176 754081.3071459301 812588.3410460078 757288.871349519 643934.674193761 660796.8479940615 713397.3803375413 602710.5566585156 672592.2888291454 0.9005416073591894 1.092427333750869 1.121156634814594 1.2081440042385392 1.125925592557438 0.9573922937991576 0.9824627177102826 1.0606683903251848 0.8961009019412332 1.0 19.359372713111412 2.740019875770973 24.978951948469028 0.9897354412166641 1.0981285290986376 0.3043269652983708 0.08214786505874028 176.8036440182689 3026460.4596501244 0.02665441843873076 0.026938427886375182 549.5660245306051 -2.740019875770973 0.10839308788197344 SLDNEWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDNEWDR 8 0 P49750;P49750-1;H0YIQ2;P49750-3 P49750 YLPM1 YLP motif-containing protein 1 0 73.985 0.098059 344950000.0 337350.0 411860.0 349840.0 346620.0 353970.0 382950.0 369390.0 361220.0 415350.0 389170.0 False True 335533.74508310854 425568.5111253725 399094.4311362086 390502.05646025104 399045.9813554372 356477.56786733575 351521.19449316594 388176.07063799363 312992.55790485576 364332.8374148005 0.9209538933244615 1.168076185899362 1.095411640542934 1.0718277804195189 1.095278658346997 0.9784393040078313 0.9648353329539489 1.0654435471487493 0.8590841279247834 1.0 18.47489750586253 2.7338289891514242 24.540842938078928 0.9841260399142776 1.0772200059902162 0.2866042183418217 0.0750096934995601 415.74522553226234 2156280.0047970177 0.022977128754473084 0.022301978464953895 541.7875103341644 -2.7338289891514242 0.09309396607593856 SLDPADERDDVLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDPADERDDVLAK 14 1 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 0 ; 109.07 0.00071939 383720000.0 957665.0 984670.0 923268.0 918353.0 885694.0 1210110.0 1103758.0 1113533.0 1536260.0 1234180.0 False True 952509.038046584 1017444.1457044142 1053256.1092106823 1034616.3956391443 998481.8809803716 1126457.9439925347 1050365.0087749755 1196630.4868660034 1157669.3078293328 1155413.5757653413 0.8243879577195082 0.8805887061093802 0.9115836366324584 0.8954511331181293 0.8641770374897848 0.9749391625819988 0.9090814153531285 1.0356728637824426 1.0019523157000274 1.0 20.139977920451418 2.2796116996346756 0.9068947504052962 1.0184734953947674 0.873012439227391 0.7162224861025173 0.03499746380889441 0.2996256358840389 0.47333236503873666 0.02543267667875571 0.015145859791641647 190.37578171529844 -2.2796116996346756 -0.14546105616737637 SLDQEIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLDQEIAR 8 0 P48681 P48681 NES Nestin 0 ;;; 125.25 0.0029544000000000003 1724790000.0 1596190.0 1775470.0 1653920.0 1544200.0 1577250.0 1860630.0 1869630.0 1435030.0 1973130.0 1680810.0 False True 1587596.2903933825 1834565.4456557191 1886777.559869648 1739695.561669607 1778103.4384068216 1732009.0275519006 1779188.854219816 1542119.2255346903 1486878.5500874172 1573539.2667861602 1.0089333796136737 1.1658847569801585 1.1990660796938701 1.1055939933566508 1.1300025845802175 1.1007091237636564 1.1306923772253108 0.980032248374937 0.9449262445952549 1.0 20.585581750051915 1.7014302375781534 4.6633254510397935 0.9691519177407187 1.1242881465668677 0.6541839889288088 0.048235027874279406 0.09507628134222121 4.8699507866354566 0.02559854270966206 0.012520112807592144 50.284048612793974 -1.7014302375781534 0.15513622882614897 SLDS(ph)DES(ph)EDEEDDYQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDSDESEDEEDDYQQK 17 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 S(0.007)LDS(0.996)DES(0.997)EDEEDDYQQK;S(0.004)LDS(0.997)DES(0.999)EDEEDDYQQK 270.77 7.188899999999999e-36 1432500000.0 1122060.0 832290.0 737610.0 674640.0 725240.0 1092040.0 1028230.0 943720.0 1335830.0 1009080.0 True False 1116018.953632585 859992.2695200713 841459.0765789471 760049.3548276027 817595.015165741 1016549.8451856521 978490.5866799541 1014145.1785130597 1006632.5957049316 944679.6504831489 1.1813729162704056 0.9103533341490262 0.8907348392109321 0.8045577719800374 0.8654733006555063 1.0760789063951424 1.0357909013701236 1.0735334226733722 1.0655809037382116 1.0 19.849465655608693 2.72957354924974 24.634288398263767 1.0550262453951664 0.9201734679655348 0.2813300201240253 0.09478519973736137 662.0474708809526 1814722.6179364168 0.03126218682171666 0.029886112248482574 536.5047226492425 -2.72957354924974 -0.13485277742963164 SLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;S(0.001)LDS(0.999)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;S(0.002)LDS(0.998)DES(1)EDEEDDYQQKR 269.83 1.6596e-31 18686480000.0 11416320.0 9732080.0 7825320.0 8890380.0 9223630.0 12561370.0 12402550.0 11613130.0 17497610.0 12041110.0 True False 11354855.801592384 10056006.399633398 8927057.037099242 10015901.196448792 10398204.607761813 11693032.058184389 11802591.274158 12479760.730879255 13185558.47146162 11272636.05088709 1.0072937465854603 0.8920723027194736 0.79192275851013 0.8885145542919041 0.9224288410290277 1.0372934959843947 1.0470125373407408 1.1070845075227256 1.169696104082416 1.0 23.42632158636312 2.6322612887828076 1.7066773527749097 1.094588065793262 0.8866438899591794 0.6545031402230039 0.06315409219076726 0.2133874592278242 1.2442232186815048 0.026323198856474144 0.023584401028634953 428.8064297584119 -2.6322612887828076 -0.20794417583408265 SLDS(ph)DESEDEEDDYQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLDSDESEDEEDDYQQK 17 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 SLDS(1)DESEDEEDDYQQK;SLDS(1)DESEDEEDDYQQK 505.23 1.5298999999999983e-258 597800000.0 637930.0 559870.0 555630.0 473440.0 582890.0 625420.0 728360.0 631410.0 832610.0 677530.0 True False 634495.4557606856 578504.9345014385 633857.8743774627 533377.4554571037 657117.5864402927 582186.1874803207 693126.4441945982 678529.0204350143 627424.4219024004 634289.4553373837 1.0003247735266108 0.9120519498368881 0.9993195835808252 0.8409054430416093 1.035990084512388 0.9178556928250544 1.092760471362272 1.0697466507213165 0.9891768129247369 1.0 19.27478183291074 2.2428393745030832 24.999435787335962 1.048271335664031 0.950345889289248 0.3355253660338391 0.05915510356862642 105.09815827731589 614059.0014294748 0.019684762868379547 0.015933517983924794 174.91996207143046 -2.2428393745030832 -0.09792544637478295 SLDSEPSVPSAAKPPS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLDSEPSVPSAAKPPSPEK 19 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK 285.43 3.1184999999999996e-40 10064140000.0 10655770.0 6486230.0 5537680.0 4883930.0 5003760.0 9140550.0 8929520.0 8272530.0 15734520.0 8350060.0 True False 10598400.518287338 6702120.2445411645 6317337.209622578 5502235.037239381 5640959.176390877 8508685.293040266 8497565.003520979 8889868.19565618 11856958.377765998 7817152.021953976 1.3557879504610377 0.8573608682188455 0.8081379499695972 0.7038669609835785 0.7216130837098473 1.088463582279603 1.0870410322910578 1.1372259578283177 1.516787487881326 1.0 22.898211663791095 2.232327427522219 1.7187179474339567 1.2226035814846765 0.8787279917837436 0.2974967942389677 0.21246930408426712 0.4427417728859237 2.602267274803521 0.11368884090567163 0.07033733538760246 170.7369140239976 -2.232327427522219 -0.3438755897009329 SLDSESIS(ph)PGDFHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 SLDSESIS(1)PGDFHR 158.45 3.2646e-06 239420000.0 129730.0 146940.0 151450.0 149940.0 140170.0 151490.0 152170.0 132900.0 134860.0 147190.0 True False 129031.54809435806 151830.80907289428 172772.8435730015 168922.38862630565 158019.81864731907 141017.85286910212 144808.95575414904 142817.67285252587 101625.56003141652 137796.20818430118 0.9363940401159626 1.101850414271356 1.2538287217738198 1.2258856092786927 1.1467646369192466 1.0233797774790145 1.0508921664990112 1.0364412398163274 0.7375062156680919 1.0 17.07217666357502 1.4822986810633072 3.282324592865443 0.8690310291229674 1.1132137372379036 0.4218454846768436 0.10711942999991414 0.20769102128027161 4.462896757116085 0.07979269692165702 0.028857851290921673 30.35978425816419 -1.4822986810633072 0.24418270811493625 SLDTITLS(ph)GDER ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDTITLSGDER 12 0 Q8N9U0;Q8N9U0-2;H0YJ73 Q8N9U0 TC2N Tandem C2 domains nuclear protein 1 SLDTIT(0.005)LS(0.995)GDER 166.6 0.00017265 0.0 221140.0 288500.0 215290.0 231450.0 250810.0 241530.0 243350.0 202430.0 227100.0 210790.0 True False 219949.4068109638 298102.5480980671 245600.96066577395 260751.5462688968 282749.16683266097 224833.5996004635 231578.2308127239 217536.3545187119 171134.24798409225 197337.2017336016 1.1145866307959909 1.5106251911917512 1.2445750649557035 1.321350176136086 1.432822419435959 1.1393371225765179 1.1735153269546534 1.1023585649723484 0.8672173643929418 1.0 17.59030343099141 1.8907785971747464 1.0640777866573796 0.9459964052441927 1.3252120190965975 0.6013748597907661 0.1161589151337296 0.3231571463975585 0.6730224002778417 0.08938872142482228 0.03891575941893944 77.76400099914075 -1.8907785971747464 0.37921561385240476 SLDTITLS(ph)GDERDFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLDTITLSGDERDFGR 16 1 Q8N9U0;Q8N9U0-2;H0YJ73 Q8N9U0 TC2N Tandem C2 domains nuclear protein 1 SLDTITLS(1)GDERDFGR 161.55 5.0807000000000005e-09 125830000.0 46035.0 91290.0 79547.0 87446.0 104110.0 72134.0 73481.0 64673.0 56624.0 69270.0 True False 45787.152674969315 94328.53246402959 90746.52616508117 98516.6546339597 117367.7913916844 67147.54636517135 69926.44330532054 69499.22766283981 42669.77392272676 64849.129294969396 0.7060565526902334 1.454584409837975 1.399348413026738 1.5191669603743165 1.8098591710897356 1.03544252783638 1.0782942510647557 1.0717064117656725 0.6579853019867272 1.0 15.984799583629158 2.5119360268545696 24.411907880980447 0.9847566224972012 1.3942724977088992 0.34652844569100494 0.2808801877904311 535.6815491305057 375615.95215391344 0.09141498939891902 0.08614291150587793 325.0394143793892 -2.5119360268545696 0.40951587521169797 SLEAEILQLQEELASSER ddPTM_BT-474_Trastuzumab_2h_R1 3 SLEAEILQLQEELASSER 18 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;; 163.23 7.8251e-11 44483000.0 30698.6 33804.8 33100.1 33737.1 28991.6 32592.1 35522.4 31133.8 36558.1 34926.4 False True 30533.32214853509 34929.97233256686 37760.306368773236 38008.21340085718 32683.508413323972 30339.084840550942 33804.04580325414 33457.162250233036 27548.84610844229 32697.367250004554 0.9338159220917347 1.0682808822340886 1.1548424091780043 1.1624242744146898 0.9995761482392568 0.9278754649748358 1.0338461058588573 1.0232371919861032 0.842540192848048 1.0 14.996886855998387 3.0570230023866634 9.775597339254693 0.9759432875378619 1.0841804967135658 0.32251170016243424 0.07762341395540132 0.4960354077057367 81.15966584749494 0.02322274017339859 0.027764898686277264 1140.31018243655 -3.0570230023866634 0.1082372091757039 SLEAQVAHADQQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLEAQVAHADQQLR 14 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4;Q14980-5;H0YFY6;K4DIE0 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 165.34 3.9794e-06 487280000.0 829380.0 1511420.0 1445820.0 1618780.0 1459820.0 1311240.0 1367730.0 1068770.0 889410.0 1291770.0 False True 824914.7102327802 1561726.7010273167 1649378.888707274 1823717.3820227492 1645719.4239689647 1220597.0651269476 1301567.6746640096 1148527.0445040937 670226.8229834058 1209328.1326600625 0.682126453486434 1.291400289838715 1.3638803598153852 1.5080418066610786 1.360854328551017 1.009318341451379 1.0762733781782245 0.949723250031214 0.554214199506929 1.0 20.20577432022331 1.9706262389227402 1.3714294561571378 0.8008319834881219 1.2499821872387582 0.33350333241836116 0.23808882801489153 0.47811738145795535 1.6702582014198277 0.17288510179340463 0.0795431214191741 93.46009947272205 -1.9706262389227402 0.4491502037506363 SLEDQVEMLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLEDQVEMLR 10 0 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;; 215.93 1.8513e-08 2246518000.0 1339616.0 1833010.0 1682370.0 1748800.0 1667040.0 1662410.0 1719890.0 1561010.0 1813440.0 1616490.0 False True 1332403.656301331 1894020.6297720545 1919233.072577815 1970197.9006914957 1879327.6626797935 1547491.5095922097 1636692.350082165 1677500.4928481663 1366542.0108510456 1513324.2242532824 0.8804482443005742 1.2515630156562243 1.2682233204353943 1.3019007223410093 1.2418539481234483 1.022577637224955 1.08152127868683 1.1084871741056634 0.9030067641488635 1.0 20.529289682200154 2.734147151675953 24.843889639396355 1.04112657283829 1.2029808247456166 0.30664978137019194 0.12215648646174901 452.2954482875037 2546012.2512835134 0.039268284374630716 0.038197728974039016 542.1845672755682 -2.734147151675953 0.16185425190732672 SLEDVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLEDVVR 7 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 128.57 0.008712899999999999 78552000.0 135840.0 173620.0 148060.0 150120.0 156290.0 158820.0 150630.0 122240.0 186340.0 149220.0 False True 135108.65253324274 179398.83674449354 168905.56103940966 169125.17660784943 176192.60509659373 147841.14722206598 143343.45143752027 131362.1695221427 140419.00382807452 139696.65184633073 0.967157413921882 1.2842028378878834 1.2090881120415782 1.2106602010325251 1.2612514528294445 1.0583012926086044 1.026105132392157 0.9403387109566796 1.005170861092207 1.0 17.09193791807195 2.4909522637719497 2.9876324997932824 0.984358254764651 1.1940772722879012 0.5431773690158976 0.08367545991716653 0.18114139003779328 3.302959632480681 0.029377661027050053 0.02544224251479818 309.707885973508 -2.4909522637719497 0.20971901752325017 SLEEFNDVYLVTHLMGADLNNIVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLEEFNDVYLVTHLMGADLNNIVK 24 0 Q16539-2;Q16539;B4E0K5;Q16539-5;Q16539-3;Q16539-4;E7EX54;B5TY33 Q16539-2 MAPK14 Mitogen-activated protein kinase 14 0 62.735 0.05131 66006000.0 45078.0 42718.0 44727.0 34055.0 41979.0 51097.0 50158.0 39484.0 55715.0 45017.0 False True 44835.30505663664 44139.84280642368 51024.17282594676 38366.359508262176 47324.77682097317 47564.784659400044 47731.66591783272 42430.49657568948 41984.78479275077 42143.976519007265 1.0638603368719979 1.0473582811179734 1.2107109257460424 0.910364011116954 1.1229309792261613 1.1286259292107368 1.1325857183008197 1.0067986004252112 0.996222669538915 1.0 15.363038826442894 1.6271221208185087 6.637292015563638 0.999177809470644 1.0870889956249297 0.22861503023100238 0.07331342014278319 0.19002124419557184 17.686344594064384 0.037430391736787756 0.018366816011526343 42.37621084804726 -1.6271221208185087 0.08791118615428561 SLEEIYLFSLPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLEEIYLFSLPIK 13 0 P15880;H0YEN5;E9PQD7;E9PPT0;E9PMM9;H3BNG3;H0YE27 P15880 RPS2 40S ribosomal protein S2 0 199.49 2.7325e-07 50772000.0 141460.0 156010.0 136160.0 145920.0 143410.0 141570.0 161880.0 139740.0 189750.0 157870.0 False True 140698.39507768353 161202.69853996343 155330.14447606407 164393.45703848542 161672.4134423347 131783.59911993388 154049.24595834687 150168.10838534206 142988.6550197335 147794.601440693 0.9519860245649295 1.0907211560406747 1.0509865919452746 1.1123102971014351 1.0938993161208979 0.8916672045887684 1.0423198442749868 1.0160594969066006 0.9674822600141588 1.0 17.17323404691827 2.815665075302925 24.99999660451097 0.9920050477103564 1.0640960445527896 0.31725312296323593 0.05523181183326484 152.2515636978485 49364.33089415844 0.016589550629257148 0.017595873901027178 654.1315181029669 -2.815665075302925 0.07209099684243325 SLEELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLEELR 6 0 P41229-4;P41229-3;P41229-2;P41229-5;P41229;J3KSH6;Q9BYE0;Q9BYE0-2;P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P41229-4;P52948-6;REV__O94964-2 KDM5C;HES7;NUP98 Lysine-specific demethylase 5C;Transcription factor HES-7;Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 ; 114.59 0.058529 355240000.0 594160.0 723160.0 666470.0 697900.0 682740.0 717160.0 696230.0 606600.0 774110.0 676560.0 False True 590961.1085773825 747229.9434405478 760303.1829389116 786254.0684427 769682.8920829757 667584.4172130524 662550.6950431181 651867.572252387 583340.9630425618 633381.3615678418 0.9330257321032399 1.1797472877807624 1.2003876796388413 1.2413596549422363 1.2151966236861464 1.0540007296086926 1.0460533499171367 1.0291865403787464 0.9209948357157014 1.0 19.27271488842546 2.484674075005319 2.7680691447159016 1.004945761081865 1.1622151465177997 0.41752383551532335 0.08580921021236178 0.27696158492060724 4.310781438829129 0.03271258924819558 0.028034571564181873 305.2629346521916 -2.484674075005319 0.1572693854359346 SLENETLNKEEDCHS(ph)PTSKPPKPDQPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLENETLNKEEDCHSPTSKPPKPDQPLK 28 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SLENETLNKEEDCHS(0.64)PT(0.188)S(0.171)KPPKPDQPLK;SLENETLNKEEDCHS(0.776)PT(0.098)S(0.126)KPPKPDQPLK 138.59 1.5205e-06 3758370000.0 4537430.0 2479650.0 2182720.0 2039070.0 2022480.0 3589130.0 3538370.0 3169650.0 6209010.0 3195810.0 True False 4513000.981035864 2562183.6512699216 2490028.0034576524 2297216.0529294447 2280030.8398218574 3341021.8910032418 3367205.5252139606 3406185.378156572 4678882.68197142 2991850.669729404 1.508431228435622 0.8563875454056858 0.8322701492594419 0.7678244359492764 0.7620804283082996 1.1167074362389278 1.1254590876751562 1.1384877636505308 1.56387574062799 1.0 21.512606738059997 2.2064211410381716 1.717809150933819 1.2417685231780282 0.9299463803673692 0.1982504858694335 0.24344013735235384 0.555489745944897 3.2387243995388153 0.13131096720836544 0.07913531392410725 160.85002807417777 -2.2064211410381716 -0.311822142810659 SLENYHFVDEHGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLENYHFVDEHGK 13 0 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ;;; 162.37 2.3455e-05 2535100000.0 2654490.0 2465240.0 2089020.0 1979190.0 1864390.0 2541730.0 2123220.0 1681250.0 2950170.0 2275140.0 False True 2640198.5207815673 2547294.023130949 2383135.857912654 2229755.25106908 2101809.015394702 2366026.1876888457 2020511.7371119438 1806713.412214515 2223140.1337526636 2129938.617354648 1.2395655439407236 1.19594715189241 1.1188753696913918 1.0468636198720143 0.9867932335088216 1.1108424291716983 0.948624397270842 0.8482467041507638 1.0437578414883009 1.0 21.022380423383698 4.192226051727211 0.5561892031548413 0.9471413338958997 1.3492916542729831 0.6723294214589013 0.06349803647714451 1.3558283043734678 0.4865496759299999 0.04011443628945836 0.32821527093652103 15567.757277196577 -4.192226051727211 0.4021503203770834 SLENYHFVDEHGKDQGINIR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLENYHFVDEHGKDQGINIR 20 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ;; 238.96 7.726599999999997e-30 2043510000.0 1211810.0 1259020.0 1256050.0 1213900.0 1160190.0 1427120.0 1369770.0 1051420.0 1782180.0 1403080.0 False True 1205285.7496047476 1300925.7196063374 1432890.9222176846 1367579.6155360306 1307933.3195151123 1328466.5534791262 1303508.992070452 1129882.2994025787 1342985.618988504 1313534.2331627768 0.9175899030074119 0.9904010773087503 1.0908668278614377 1.0411450124471604 0.995735997200333 1.0113680480792608 0.992367735199268 0.8601848896484455 1.0224214832641347 1.0 20.325022369621067 1.9815963853745329 24.16968893329377 0.9405694048770387 1.0109668980082054 0.0855271797121494 0.057760283483135624 721.571896330467 947648.0322286914 0.023677097055428212 0.01560034336126493 95.85094199951098 -1.9815963853745329 0.07039749313116672 SLEPEPQQSLEDGS(ph)PAKGEPSQAWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLEPEPQQSLEDGSPAKGEPSQAWR 25 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 1 SLEPEPQQSLEDGS(1)PAKGEPSQAWR 144.2 1.8677e-07 810400000.0 650390.0 630840.0 558020.0 565880.0 563690.0 697860.0 749800.0 684490.0 876590.0 807050.0 True False 646888.3725051216 651837.1280491668 636584.3656032112 637520.3499790169 635472.5802476088 649618.580785739 713529.3094858441 735570.1195697921 660566.1402042068 755543.378049733 0.8561895865925262 0.8627395156737911 0.8425517105932581 0.8437905334100522 0.8410802062588911 0.8598031557930992 0.944392248301694 0.9735643788825237 0.8742928062043389 1.0 19.527155061727257 2.251645433928193 4.752378366913517 0.9496284348506593 0.8495807532195833 0.7123731161421394 0.03027456506679961 0.09674714237931381 5.55812900631193 0.01063766668901352 0.00834084698328265 178.5029648474103 -2.251645433928193 -0.10004768163107602 SLEPSPS(ph)PGPQEEDGEVALVLLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLEPSPSPGPQEEDGEVALVLLGR 24 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 SLEPS(0.112)PS(0.887)PGPQEEDGEVALVLLGR;SLEPS(0.398)PS(0.602)PGPQEEDGEVALVLLGR;SLEPS(0.008)PS(0.992)PGPQEEDGEVALVLLGR;SLEPS(0.03)PS(0.97)PGPQEEDGEVALVLLGR 224.06 4.6036999999999995e-33 449919000.0 327641.0 368156.0 338997.0 342662.0 324810.0 348410.0 322118.0 295966.0 292021.0 302800.0 True False 325877.0172603374 380409.849904998 386724.8309852543 386042.9740660734 366172.6282002979 324325.2367689214 306535.9217297427 318052.4858048957 220056.33743092284 283475.0447598777 1.149579207356249 1.3419518117625857 1.364228838248658 1.361823487471631 1.2917279138644127 1.1441050729655815 1.0813506423092696 1.1219770194385448 0.7762811630114574 1.0 18.11286221000698 2.059951079978818 0.968131111638891 0.9297224533656461 1.3138744136348193 0.7082349676637227 0.09565808970190853 0.3039506418493513 0.5271780247376195 0.07593119958741933 0.03764241620739823 114.80242978731495 -2.059951079978818 0.3841519602691732 SLEQYDQVLDGAHGAS(ph)LTDLANLSEGVSLAER ddPTM_BT-474_Trastuzumab_2h_R1 6 SLEQYDQVLDGAHGASLTDLANLSEGVSLAER 32 0 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4;M0R2S2;M0R3I1 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 SLEQYDQVLDGAHGAS(0.999)LT(0.001)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.998)LT(0.002)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.992)LT(0.008)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.997)LT(0.003)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.778)LT(0.222)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.998)LT(0.002)DLANLSEGVSLAER 341.81 8.471499999999994e-118 2412820000.0 989961.0 911083.0 923202.0 993233.0 936952.0 1076107.0 970864.0 886478.0 1123478.0 1069222.0 True False 984631.1599710062 941407.8468936974 1053180.8169843662 1118976.195961525 1056267.283450404 1001718.2559734031 923899.5992593558 952631.4898040743 846611.9007339143 1000983.3365529898 0.9836638873147536 0.9404830355473769 1.0521462031637059 1.117876946698092 1.0552296375759773 1.0007341974572166 0.9229919874999304 0.9516956526814712 0.8457802141335613 1.0 19.932986527042072 2.3507945293432106 3.7012363230088376 0.9283585023845131 1.0309191531554955 0.412181367228585 0.05626039525373533 0.24215955320147786 6.3455110590756325 0.022047525574312228 0.01788553019697046 224.28205636594726 -2.3507945293432106 0.10256065077098242 SLESINSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLESINSR 8 0 E5RI99;P62888;E5RJH3;A0A0C4DH44 E5RI99 RPL30 60S ribosomal protein L30 0 93.649 0.025402 380750000.0 188350.0 279240.0 226250.0 301180.0 273840.0 233560.0 198150.0 206530.0 205880.0 231220.0 False True 187335.94452765226 288534.33459585573 258104.03339974623 339309.35711931915 308711.9008231569 217414.54694110152 188564.7274934916 221942.3173380901 155143.63265066 216463.34164259883 0.8654395848557184 1.3329477980260178 1.192368331012371 1.5675141783570474 1.426162501606711 1.0043943020156882 0.8711162179360123 1.0253113328747256 0.7167201220926203 1.0 17.723763197733362 2.589328302046137 5.08196118804391 0.9192285402865303 1.289983808930804 0.47629128655814157 0.18686802623351603 0.20359156276888116 7.786441776261428 0.062245159202037756 0.058203515429624555 388.4438966293267 -2.589328302046137 0.37075526864427366 SLESVLSLGPRPTGGGS(ph)SPPEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 1 SLESVLS(0.001)LGPRPT(0.033)GGGS(0.559)S(0.407)PPEIR 108.57 0.00074954 177180000.0 58300.0 137100.0 123470.0 107970.0 137960.0 143970.0 158790.0 106230.0 99408.0 124760.0 True False 57986.1192777389 141663.29062129997 140853.5027795212 121638.99092958657 155528.3882470156 134017.6927689263 151108.72106329317 114157.4220250099 74910.23039895487 116797.70998759026 0.496466234516926 1.2128944192172233 1.2059611681983051 1.0414501358161106 1.331604774302 1.1474342500650538 1.2937644160947028 0.9773943516284618 0.6413672871404248 1.0 16.833652462508038 1.4784439210560045 6.2943903340170815 0.8149638625161276 1.1207464188678642 0.18653436323554173 0.23484653722997587 0.20051557348707827 19.48547630318937 0.13148277052203872 0.05715976226763766 30.091505825808433 -1.4784439210560045 0.30578255635173657 SLETCMYDHK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLETCMYDHK 10 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 136.5 0.00011603 995980000.0 804850.0 830080.0 746860.0 765770.0 698480.0 963410.0 921140.0 817530.0 1168420.0 988790.0 False True 800516.7770272411 857708.7110060434 852011.396176506 862716.4034838331 787427.287784687 896811.7343231997 876580.9391034824 878538.239933224 880478.5470258618 925684.5756542897 0.8647835321890528 0.9265669252399503 0.9204122209493334 0.9319766432038152 0.8506431980117201 0.9688092012220446 0.9469542457093444 0.9490686817507553 0.9511647597709236 1.0 19.820161157489373 7.999458021627843 0.03467338133383907 1.2597384133111929 0.42453873428674765 0.525985946559786 0.029333655745568694 810.9149830798468 2.1489115626260795 15.364333505149936 42.78483992953451 99875282.70469739 -7.999458021627843 -0.8351996790244451 SLETEHK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLETEHK 7 0 P04843;B7Z4L4 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ;; 114.78 0.005827399999999999 814330000.0 1026050.0 1384930.0 1399720.0 1139580.0 1397220.0 1474090.0 1412060.0 1199000.0 1650800.0 1385760.0 False True 1020525.8608048711 1431026.5578421354 1596788.4094156576 1283850.7111562311 1575147.6850282317 1372189.6279346135 1343753.263206964 1288475.468398634 1243982.4595866988 1297319.6103911763 0.7866418210522197 1.1030639993259972 1.2308365622671684 0.9896179020751225 1.2141554574614677 1.0577113125738244 1.0357919917681555 0.993182757801776 0.9588866533911448 1.0 20.307102518091025 1.905906769400517 2.198667784647209 0.9801333555583629 1.076052515972687 0.08030339744938586 0.11669456884271881 0.7230438932959355 6.427639140672534 0.06827084945118776 0.03361996251621716 80.52055680468852 -1.905906769400517 0.09591916041432413 SLETENR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLETENR 7 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;; 163.34 0.0028812 7023500000.0 3694590.0 4169940.0 3867150.0 3958120.0 4199170.0 4020250.0 4205790.0 3962100.0 4637710.0 3906970.0 False True 3674698.7379475385 4308733.93211804 4411611.106129631 4459217.586164811 4733909.409069437 3742339.580150559 4002339.8700219686 4257772.021136141 3494808.5126301395 3657623.829674697 1.0046683062742294 1.1780145068940158 1.2061412850435176 1.2191569701582479 1.2942581384839846 1.0231614169255334 1.0942458974459193 1.1640814417798728 0.9554860410401914 1.0 21.80247527727877 2.716703667559237 24.990384053617877 1.0701387128634232 1.1838905915837212 0.3545523485489187 0.08703614676749402 1065.7504771095553 1218536.0405366048 0.02887043369289354 0.027238423387543616 520.8392052735711 -2.716703667559237 0.11375187872029802 SLETENRR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLETENRR 8 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;; 160.88 0.00056246 9412700000.0 3327230.0 4172290.0 3836140.0 3908070.0 3888000.0 3523930.0 3915440.0 3551170.0 4471350.0 3712410.0 False True 3309316.5633700024 4311162.150447431 4376235.167673381 4402831.261296561 4383113.754018526 3280329.0135389506 3726035.2087666816 3816176.3378758756 3369445.7055203454 3475480.8154458916 0.9521895642935463 1.2404505676703972 1.2591740251375625 1.266826518428557 1.2611532005985733 0.9438489773732491 1.0720920087394137 1.0980283133533206 0.9694905207203849 1.0 21.728781150634926 2.7456000681015467 24.970443549960166 1.0335326802655793 1.205879598917258 0.45464623480976574 0.09699448847074328 534.7208467921581 1896770.4951795624 0.030283285031533436 0.03150692591429622 556.672885442597 -2.7456000681015467 0.17234691865167862 SLETVYLER ddPTM_BT-474_Trastuzumab_2h_R1 3 SLETVYLER 9 0 Q15435;H7C003;C9J177;Q15435-2;H7C3Q5 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 0 ;; 128.38 0.00097451 589720000.0 360276.0 426202.0 407981.0 401240.0 402561.0 431507.0 398302.0 382111.0 493709.0 437496.0 False True 358336.31404642685 440387.8759254504 465421.17856557743 452036.94285993587 453824.75718401594 401677.9367482183 379034.6105986008 410626.0631403425 372041.03231166094 409574.6307208297 0.8748987050681676 1.0752323090675588 1.1363525561787378 1.1036741754839032 1.1080392269055053 0.9807197678266507 0.9254347856739075 1.0025671326802208 0.9083595623510381 1.0 18.64376683121334 2.614823227435346 5.634704755836557 0.9617780038243576 1.0668613831747205 0.3073871483224021 0.07223213508180215 0.2815305506924519 11.82464340572994 0.02396822015260045 0.022508826449089952 411.9298155812198 -2.614823227435346 0.10508337935036283 SLFDYHDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLFDYHDTR 9 0 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599-2;Q92599-4;Q92599;Q92599-3;C9J4G8;C9JV02 A0A087X142 SEPT8 Septin-8 0 ; 112.36 0.0019756 518410000.0 655350.0 867000.0 819400.0 844340.0 787980.0 836380.0 885250.0 742500.0 835440.0 834810.0 False True 651821.6684162304 895857.570887432 934764.3976475229 951233.3574278705 888324.582276625 778563.0192267451 842427.0755165961 797909.1203386029 629557.0063224573 781531.7110832011 0.8340309921817594 1.146284351847701 1.1960671389161441 1.2171398088370122 1.13664560206445 0.9962014441457002 1.0779179700194048 1.0209555274893487 0.8055424973733859 1.0 19.575944887001878 1.4907033023469125 3.5836388176767104 0.9021472219842834 1.0954074466214043 0.2853078895045923 0.11310285884934494 0.2501786489375612 6.573146539187295 0.07912640922268716 0.029732332509115136 30.953039529938547 -1.4907033023469125 0.1932602246371209 SLFNYHDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLFNYHDTR 9 0 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2 D6RGI3 SEPT11 Septin-11 0 ; 110.38 0.0022961 1485880000.0 2587600.0 2881900.0 3004000.0 2607900.0 2486600.0 2931300.0 3083800.0 2541400.0 3996100.0 3029700.0 False True 2573668.6491093836 2977822.299354664 3426937.0887639206 2938059.8726059906 2803253.7707670997 2728666.130537982 2934624.81273999 2731052.172967717 3011314.6999966125 2836341.9521433297 0.9073901146385215 1.0498812729912281 1.2082242362118212 1.0358623615131441 0.9883342058417088 0.9620370803583889 1.0346512734553714 0.9628783196976484 1.0616895814417093 1.0 21.435600045103957 3.472896740492852 21.364791795479338 0.9989239786615586 1.0658711605547817 0.09446740900651884 0.07322944145750256 37.91722817311186 191752.52689948207 0.02050113687985653 0.027946870712214283 2970.9595611143336 -3.472896740492852 0.06694718189322313 SLFS(ph)PQNTLAAPTGHPPTSGVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLFSPQNTLAAPTGHPPTSGVEK 23 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 SLFS(1)PQNTLAAPTGHPPTSGVEK;SLFS(0.999)PQNT(0.001)LAAPTGHPPTSGVEK 264.55 3.7619e-44 722430000.0 839020.0 793210.0 750500.0 767050.0 713020.0 862690.0 835410.0 819100.0 1194460.0 910050.0 True False 834502.8095438844 819611.5153444294 856163.8765370584 864158.4513525926 803818.8705993542 803054.2708538236 794998.0267238847 880225.4013055235 900101.3379439852 851969.8298669972 0.9794980764449844 0.9620194126737805 1.0049227643081162 1.0143064003657245 0.9434827882635703 0.942585338942331 0.933129318497104 1.0331649906463676 1.0564943808919876 1.0 19.700442816775322 1.639307769194289 7.354816669695512 1.0343255084206577 0.9696662966649849 0.49936654875009967 0.027986706054963607 0.10245510024632103 11.281492233752186 0.015264015487820437 0.007707599643149196 43.58206149866303 -1.639307769194289 -0.0646592117556728 SLFSDHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLFSDHGK 8 0 P50135;P50135-3;P50135-2 P50135 HNMT Histamine N-methyltransferase 0 ; 135.83 0.00081697 654740000.0 399630.0 596130.0 617260.0 579670.0 630820.0 750700.0 755430.0 681940.0 777520.0 787560.0 False True 397478.4364830667 615971.826681805 704164.8426798999 653056.1625650963 711151.1878369258 698805.8759577189 718886.9648771553 732829.8256211547 585910.6142342207 737297.2465359605 0.5391020220820536 0.8354457168744654 0.9550623523799575 0.8857433899737811 0.9645379677980943 0.9477939585979938 0.9750300414855716 0.9939408143244872 0.7946735417594482 1.0 19.49188684361821 4.755871755313518 2.06747982179396 0.9441754576879836 0.41175838658349123 0.8137425412324648 0.05765472345305898 0.2824320930712846 1.2774586743337137 0.014068695968928065 0.28641091385935036 56999.59308755225 -4.755871755313518 -0.5324170711044924 SLGCDRPINYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGCDRPINYK 11 1 Q8N4Q0-2;Q8N4Q0;J3KTQ8 Q8N4Q0-2 ZADH2 Zinc-binding alcohol dehydrogenase domain-containing protein 2 0 ; 109.6 0.0012307 364100000.0 666930.0 642700.0 689500.0 549480.0 576490.0 823830.0 722480.0 656860.0 941650.0 682070.0 False True 663339.3229828891 664091.8809796459 786575.6067585641 619044.1116605457 649902.5843760656 766880.5711872237 687530.8822583789 705878.228667495 709592.9749635417 638539.7086504942 1.0388380142948463 1.0400165752935777 1.2318350700866085 0.9694684657416983 1.0177950964859899 1.2009912003874719 1.0767237697893899 1.1054570594510333 1.111274624507242 1.0 19.284416813537643 SLGDDISSETSGDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGDDISSETSGDFR 15 0 P12429;D6RA82;D6RFG5 P12429 ANXA3 Annexin A3;Annexin 0 ; 204.0 4.2051e-11 201910000.0 183468.0 188139.0 168706.0 172592.0 170355.0 190006.0 178648.0 178456.0 226797.0 207474.0 False True 182480.22867321092 194401.09288257288 192458.3383811606 194442.12950374337 192048.69947680717 176871.33244601384 170006.1137383664 191773.2929012064 170905.9182741001 194232.8316925722 0.9394921913203477 1.000866286036889 0.9908640918430298 1.0010775614469878 0.9887550822549814 0.9106150124298359 0.8752697072730148 0.9873371624666488 0.8799023150967935 1.0 17.567427558389703 2.7498761220917136 24.034634278905546 0.9300344480487477 0.9864429822871602 0.2996022021624989 0.04088982007294573 524.5802489731178 1114230.7441511883 0.012067338988124964 0.0126911575061879 562.1809461484143 -2.7498761220917136 0.05640853423841252 SLGDDISSETSGDFRK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLGDDISSETSGDFRK 16 1 P12429;D6RA82;D6RFG5 P12429 ANXA3 Annexin A3;Annexin 0 ;;; 276.1 4.4306999999999987e-35 1857750000.0 1078749.0 1229144.0 1051120.0 1087005.0 1052340.0 1303156.0 1292762.0 1139558.0 1621216.0 1397002.0 False True 1072941.1352442799 1270055.3150067609 1199108.559501176 1224619.7215468665 1186349.261292145 1213071.8930192587 1230226.1632295798 1224597.6045182757 1221689.0399814092 1307844.136326413 0.8203891468734577 0.9711060207634553 0.9168589178136601 0.9363651887347108 0.9071029401289871 0.9275355214931355 0.9406519699550336 0.936348277676293 0.9341243394744242 1.0 20.318759185735406 SLGGQQGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLGGQQGSPK 10 0 A0A0C4DGT3;A0A3B3IU98;Q6DN90-2;A0A3B3IRZ4;Q6DN90-3;A0A2R8Y7T6;Q6DN90;A0A2R8Y695 A0A0C4DGT3;A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 SLGGQQGS(1)PK;SLGGQQGS(1)PK;SLGGQQGS(1)PK;SLGGQQGS(1)PK 141.13 3.9932e-05 978170000.0 1815340.0 1395420.0 1218980.0 1264870.0 1224540.0 1481500.0 1678270.0 1528010.0 2358500.0 1577570.0 True False 1805566.411143234 1441865.7111507985 1390601.788435901 1425002.4123099567 1380477.9105827801 1379087.3920758795 1597085.6684860066 1642037.8652775611 1777279.277280851 1476888.1319743735 1.2225478504790122 0.9762863414869781 0.9415755725363432 0.9648682127365642 0.9347207013826379 0.9337791821999752 1.081385674317084 1.1118227777227838 1.2033946504160071 1.0 20.494129121521656 2.08313347040218 5.653789182429041 1.1126408783422805 0.9884481384107305 0.232190592140315 0.09196977193090884 0.26629328220720316 13.918293868299589 0.035047497719505945 0.025554789596656767 121.0970240168999 -2.08313347040218 -0.12419273993155 SLGGSSLTETEAAPSLTLPSVDYIPQDS(ph)PTPSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLGGSSLTETEAAPSLTLPSVDYIPQDSPTPSVR 34 0 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 SLGGSSLTETEAAPSLTLPSVDY(0.001)IPQDS(0.76)PT(0.19)PS(0.048)VR 116.49 2.886000000000001e-06 71429000.0 36992.0 36630.0 38939.0 34937.0 39146.0 44646.0 40130.0 35871.0 43096.0 38685.0 True False 36792.83918219755 37849.207406697395 44421.27273614461 39360.02061782869 44131.011063479746 41559.72710537946 38188.758588512865 38547.876169247225 32475.568256813927 36216.090180105195 1.0159252144343618 1.0450936922917573 1.2265617993337894 1.0868103216578184 1.218547083465197 1.1475486972420263 1.0544693918807206 1.0643853595886772 0.8967165725320048 1.0 15.144343183644255 1.548390437732979 1.9970614762076768 0.9524428984171455 1.1229237261679446 0.44697282520669024 0.07105893964564858 0.2731794217817237 2.2342516474015057 0.05776246338359624 0.01992404900667449 35.35008299185451 -1.548390437732979 0.1704808277507991 SLGLSLS(ph)GGDQEDAGR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLGLSLSGGDQEDAGR 16 0 C9JEV6;Q9UJ70;Q9UJ70-2;H7C3G9;H0YEB7;H0YE82;H7C1L7 C9JEV6 NAGK N-acetyl-D-glucosamine kinase 1 SLGLSLS(1)GGDQEDAGR;SLGLS(0.002)LS(0.998)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR;SLGLS(0.001)LS(0.999)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR 327.02 2.0238999999999996e-71 2908273000.0 1795078.0 1939685.0 1774162.0 1894222.0 1874774.0 1834069.0 1803519.0 1668243.0 2101840.0 1762337.0 True False 1785413.4994999145 2004246.2426606582 2023948.5883074505 2134030.3109810436 2113515.35624391 1707284.1269640315 1716275.8958583644 1792735.7638263076 1583869.695213052 1649863.1438473836 1.0821585451848057 1.2147954514499149 1.2267372574841098 1.2934589871524802 1.2810246499084261 1.0348034825377974 1.040253491484215 1.086596649250406 0.9600006528538854 1.0 20.6539149272005 2.727695300907461 24.672154717109787 1.0356574684949276 1.2238620198713392 0.7140575261507498 0.061557870751558524 352.4931052425016 800413.6840083444 0.020601520084223227 0.01960941436667236 534.1894429359871 -2.727695300907461 0.18820455137641168 SLGNILQAKPTSS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGNILQAKPTSSPAK 16 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 SLGNILQAKPT(0.005)S(0.019)S(0.976)PAK;SLGNILQAKPTS(0.088)S(0.912)PAK 240.46 4.4089999999999996e-20 3218300000.0 5099700.0 3265900.0 2986300.0 2250550.0 2281700.0 4287100.0 4041500.0 3717500.0 7344700.0 4342300.0 True False 5072243.781829936 3374603.5072217565 3406745.082615084 2535469.3992459094 2572260.970304544 3990742.867747885 3845997.2049707165 3994918.7270825044 5534697.098937742 4065170.696369937 1.2477320537509735 0.830125905963842 0.838032480568945 0.623705519059753 0.6327559560048703 0.981691339876942 0.9460850459256397 0.982718568410875 1.361491930432354 1.0 21.954884501608745 1.6800476798142483 1.7207421020094003 1.1677991341484688 0.8399657460726824 0.28322692595669896 0.18860330520842247 0.4200227127861506 2.5099558133986397 0.1480597222043422 0.05623165171557649 47.86826424875949 -1.6800476798142483 -0.32783338807578644 SLGNILQAKPTSS(ph)PAKGPPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGNILQAKPTSSPAKGPPQK 21 2 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 SLGNILQAKPT(0.002)S(0.039)S(0.959)PAKGPPQK;SLGNILQAKPT(0.037)S(0.15)S(0.813)PAKGPPQK 147.22 7.994e-08 1672300000.0 912910.0 655960.0 596920.0 582140.0 600810.0 961080.0 901060.0 818620.0 1619970.0 1081320.0 True False 907994.993993836 677793.2320638062 680961.1474783488 655838.8643118413 677319.5922201324 894642.8017389709 857472.2854165308 879709.5812681315 1220750.0999858638 1012309.2318353732 0.8969541770824221 0.6695515666047311 0.672680961571128 0.6478641542394796 0.6690836860117477 0.8837643415707407 0.8470458022613165 0.8690127024458414 1.2059063195270636 1.0 19.949218629207003 1.7699596878454706 1.0678545450054664 1.080460263191934 0.7136925811998334 0.6382359041957663 0.10217340055352113 0.3100302742670014 0.6569082901318496 0.08655958701103379 0.0351244608251037 58.878900014865955 -1.7699596878454706 -0.36676768199210064 SLGS(ph)ADELFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLGSADELFK 10 0 Q15075 Q15075 EEA1 Early endosome antigen 1 1 S(0.012)LGS(0.988)ADELFK 62.408 0.089461 22497000.0 61361.0 58027.0 53779.0 53527.0 48493.0 73694.0 65346.0 51192.0 74446.0 72280.0 True False 61030.63919384797 59958.39361693774 61350.6157445523 60303.512711753014 54668.296109470306 68599.70723701631 62184.96433403839 55012.20698770886 56099.78082529161 67667.02851797863 0.9019258053814582 0.8860798963709074 0.9066544975926036 0.8911801512863952 0.8079015335355733 1.0137833556381137 0.9189847063775869 0.8129839331291534 0.8290563669481409 1.0 16.046165415998484 -1.08274667347919 4.755843385979289 1.0000050388710156 0.8839496407100407 0.2645364359059411 0.057282142432219206 3.129607554909703e-06 6.036493744277774e-07 0.05672071684084603 0.01336862069784281 0.08265199229176777 1.08274667347919 -0.11605539816097488 SLGS(ph)PLLHER ddPTM_BT-474_Trastuzumab_2h_R1 3 SLGSPLLHER 10 0 E7EV32;E7EMT6;E7ENY2;E7EVA2;E7EW82;H7C3L4;E7EQA9;Q92844 E7EV32 TANK TRAF family member-associated NF-kappa-B activator 1 S(0.392)LGS(0.608)PLLHER;S(0.091)LGS(0.909)PLLHER;S(0.282)LGS(0.718)PLLHER 99.941 0.0028032 451440000.0 226578.0 335036.0 310748.0 338122.0 328978.0 262138.0 296730.0 235680.0 265687.0 305430.0 True False 225358.12922318207 346187.4707264609 354498.6173299643 380928.21053156984 370871.398294626 244017.01706647745 282376.0362813211 253267.63835879054 200211.99887340175 285937.19590822124 0.7881385578654008 1.2107115677163545 1.2397779036895555 1.3322093661918626 1.2970379635871736 0.8533937541473299 0.9875456580051124 0.8857456881548323 0.7001957133889809 1.0 18.12533877842775 2.729691732770275 24.8711928466466 0.8875736061047542 1.1881291627760024 0.44781445286143684 0.1595952630742687 559.6405412733224 1569408.4557585334 0.05212204350220282 0.04981947629295782 536.6507402653884 -2.729691732770275 0.3005555566712482 SLGSASPGPGQPPLSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 SLGSASPGPGQPPLS(0.064)S(0.934)PT(0.002)R;SLGSASPGPGQPPLS(0.014)S(0.984)PT(0.002)R;SLGSASPGPGQPPLS(0.003)S(0.994)PT(0.003)R;SLGSASPGPGQPPLS(0.007)S(0.991)PT(0.002)R 351.16 9.593099999999998e-91 1092230000.0 847540.0 1088260.0 1059520.0 1140480.0 1044290.0 1133850.0 1044820.0 955900.0 1000750.0 1071870.0 True False 842976.9388105453 1124482.076232938 1208691.2064870696 1284864.6510639526 1177274.1415082319 1055469.6182958041 994278.0650000002 1027234.1119618483 754128.5718629688 1003462.338925923 0.8400683375051657 1.1206021717133412 1.2045207474162085 1.280431363711402 1.1732120836426727 1.0518278338433191 0.9908474154239277 1.0236897510885858 0.7515265322963354 1.0 19.936555041067663 1.9691551147914077 1.359705612617185 0.9048849462969101 1.1317487106095074 0.32102360842415056 0.1267442854768647 0.513537387938742 1.7628388602167215 0.09351936804597495 0.04292506913022717 93.1440494014446 -1.9691551147914077 0.22686376431259736 SLGSVQAPSYGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGSVQAPSYGAR 13 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ; 244.71 1.0864e-16 942680000.0 342500.0 417200.0 431480.0 403280.0 346810.0 398430.0 376650.0 347820.0 501290.0 416160.0 False True 340656.0180553273 431086.2497972745 492228.6335086084 454335.2066507705 390974.1977960818 370887.47190333554 358430.00055727334 373776.094594173 377753.7964418565 389600.3125074983 0.8743730616200955 1.1064833265219152 1.2634195038001539 1.1661571925510874 1.0035263967827466 0.9519691334852237 0.9199941300108042 0.9593834568266145 0.9695931556384113 1.0 18.571635309076875 3.0736659831183517 4.911262031384101 0.9563574376188019 1.1136134865893654 0.34174513771091386 0.09278828313830965 0.22473066044373802 10.09298784525761 0.028550819745088343 0.03424053570161113 1184.857121316667 -3.0736659831183517 0.15725604897056356 SLGTADVHFER ddPTM_BT-474_Trastuzumab_2h_R1 8 SLGTADVHFER 11 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 ;;;;;;; 213.69 1.6712e-09 21996130000.0 9448540.0 11238900.0 11153060.0 10930750.0 10179930.0 11211450.0 11076920.0 9215460.0 11432460.0 10325170.0 False True 9397670.110471474 11612979.992441492 12723313.90386463 12314581.829244947 11476283.744327623 10436428.850414505 10541087.061656363 9903164.420357708 8615083.420115437 9666208.81077722 0.9722188186120765 1.2013996614157292 1.3162672308174148 1.2739825996221967 1.1872580004202145 1.079681709211427 1.090508933544215 1.0245138103489235 0.8912577401090441 1.0 23.204518729723883 2.06802791259091 1.1432762942594332 0.9571943379604528 1.199820303667511 0.5034747791994896 0.09211799470533416 0.41306093181314213 1.0043671998843662 0.07095644908746752 0.03473855553159458 116.9574558466106 -2.06802791259091 0.2426259657070582 SLGTIQQCCDAIDHLCR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLGTIQQCCDAIDHLCR 17 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ;;; 266.44 1.1889999999999999e-27 3406720000.0 1984670.0 2306370.0 2224570.0 2461700.0 2298540.0 2394060.0 2179420.0 2065570.0 2647260.0 2323740.0 False True 1973984.757237565 2383136.131219891 2537770.119690933 2773350.9675962124 2591245.444486047 2228564.267211057 2073993.1284070944 2219713.3221519347 1994878.2444666154 2175436.923746097 0.9073969167712609 1.0954747091063144 1.1665565165276772 1.2748477960098743 1.191137934729879 1.0244214589193763 0.9533685420929987 1.0203528762073202 0.9170011884469811 1.0 21.052873756224244 2.561803729623893 4.904616905159107 0.9793962479672225 1.1350310367106669 0.38887869851747947 0.09159052594491617 0.24652790726822366 10.204910595707178 0.03245269430317226 0.030148614417105365 364.5891411938467 -2.561803729623893 0.15563478874344439 SLGVLPFTLNSGS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGVLPFTLNSGSPEK 16 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 SLGVLPFTLNS(0.001)GS(0.999)PEK;SLGVLPFTLNS(0.021)GS(0.979)PEK 236.27 1.0514e-19 392700000.0 596750.0 465800.0 410140.0 415900.0 374590.0 684620.0 692820.0 583620.0 1082360.0 694140.0 True False 593537.164305158 481303.87141795416 467884.14699921256 468552.89735681284 422291.8161311214 637293.8308221317 659305.6497705833 627172.6879623107 815626.8808809422 649839.3909168472 0.9133597818189301 0.7406505024863003 0.7199996699785818 0.721028770964068 0.6498402867442634 0.9806943680699086 1.0145670745511137 0.9651195306542493 1.2551207148741605 1.0 19.30972367171758 2.604425461258557 4.735350737229988 1.0396613594325517 0.7462041010554856 0.7007049136132522 0.09669729096191189 0.13338591932338748 4.570893867803968 0.032094981076706566 0.030027924060692084 402.184622406049 -2.604425461258557 -0.29345725837706604 SLGYAYVNFQQPADAER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGYAYVNFQQPADAER 17 0 P11940-2;E7EQV3;P11940;A0A087WTT1;E7ERJ7;H0YBN4;E5RGH3;B1ANR1;E5RJB9;E5RHG7;E5RH24;B1ANR0;Q13310-2;Q13310;Q13310-3 P11940-2;B1ANR0 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 ; 189.1 8.698699999999998e-10 227810000.0 197344.0 208878.0 198993.0 192781.0 176523.0 226860.0 224780.0 189662.0 266590.0 237280.0 False True 196281.5218309794 215830.37796058285 227009.4847218374 217187.0548337188 199002.15771620683 211177.70217099838 213906.53265701243 203815.54152412186 200892.46662298182 222136.58725437179 0.8836073528320422 0.9716111183135824 1.0219364919921345 0.9777185177739982 0.8958549340110579 0.9506660059073284 0.9629504770056857 0.9175235112923102 0.9043646033552185 1.0 17.761087507588517 3.2953364034620005 24.999995448569624 0.9355893306066375 0.9684406320499176 0.0704792449282331 0.04261395714743422 186.05859671732162 81925.1450749494 0.011778475436759746 0.015948123969442188 1973.9511619072405 -3.2953364034620005 0.03285130144328008 SLGYHGS(ph)SYSPEGVEPVS(ph)PVSSPSLTHDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 2 S(0.004)LGY(0.001)HGS(0.666)S(0.138)Y(0.004)S(0.186)PEGVEPVS(0.997)PVS(0.003)S(0.001)PSLTHDK 147.43 2.7263e-08 414950000.0 57695.0 130300.0 132610.0 136180.0 152700.0 157890.0 163630.0 162210.0 139100.0 176140.0 True False 57384.37653051714 134636.95673198655 151280.33533321694 153420.37403715015 172145.4398761907 146975.43593308175 155714.59177269752 174314.9338856902 104820.66884450572 164898.59439895896 0.34799797257022236 0.816483349798866 0.9174143411265608 0.9303922486201539 1.0439472847154694 0.8913079973106771 0.9443051491146038 1.0571038189928361 0.6356674489953534 1.0 17.331219575684635 4.809042579770261 2.038359618975954 0.9408907583377787 0.10342553470282988 0.7071959346078365 0.11128629096555448 0.4539083449395583 1.7630640461838103 0.026853839328581226 0.7500310671816593 64423.24252492271 -4.809042579770261 -0.8374652236349488 down SLGYHGSSYS(ph)PEGVEPVS(ph)PVSSPSLTHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 2 SLGYHGS(0.008)S(0.054)YS(0.938)PEGVEPVS(0.999)PVSSPSLTHDK;S(0.044)LGY(0.003)HGS(0.405)S(0.087)Y(0.002)S(0.459)PEGVEPVS(0.999)PVS(0.001)SPSLTHDK 214.01 1.9002e-27 516080000.0 82675.0 146686.0 173512.0 188043.0 182883.0 205937.0 210354.0 183628.0 163201.0 218264.0 True False 82229.88698605598 151568.35483644065 197940.98140665985 211849.2245195166 206172.06601753365 191701.05991355388 200178.37338968436 197331.25380409067 122982.30033135985 204334.20465478834 0.4024283997139831 0.7417669258678802 0.9687119282895906 1.0367780806812275 1.0089943891961226 0.9381741066671756 0.9796615976648402 0.9657279560094758 0.601868397604463 1.0 17.64057119958177 4.624054755504703 2.3546031399166205 0.9454577307765708 0.3411569802976233 0.6616725827076506 0.11723928806093326 0.2505082162047626 1.9896003222134155 0.029107279642583046 0.27823774599876794 42077.967660897826 -4.624054755504703 -0.6043007504789475 SLGYHGSSYSPEGVEPVS(ph)PVS(ph)SPSLTHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 2 SLGYHGSSYSPEGVEPVS(1)PVS(0.876)S(0.123)PSLTHDK;SLGYHGSSYSPEGVEPVS(1)PVS(0.543)S(0.452)PS(0.004)LT(0.001)HDK 153.69 1.0019e-08 330393000.0 63933.0 109298.0 116584.0 127483.0 123953.0 143374.0 141227.0 132735.0 120161.0 154824.0 True False 63588.79183162403 112935.91785796387 132998.01383370612 143622.3347288735 139737.67982300895 133462.89284609308 134395.3104704686 142640.35971467287 90548.9316249077 144942.99976850487 0.4387158533574206 0.7791746965244201 0.9175883902370129 0.9908883834214783 0.9640871242225594 0.9207957132062452 0.9272287084241221 0.9841134786950066 0.6247209714820829 1.0 17.145126132478158 4.7114315158877345 2.1259820548876323 0.924258725150765 0.32301485230854865 0.6638247140472902 0.10267548339479199 0.3491422753615296 1.851768972329661 0.024925479452085647 0.39252355612817524 51455.46602362607 -4.7114315158877345 -0.6012438728422164 SLGYHGSSYSPEGVEPVS(ph)PVSSPSLTHDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 SLGYHGSSYSPEGVEPVS(0.997)PVS(0.003)SPSLTHDK 128.33 6.0637e-12 0.0 5581.0 19978.0 23498.0 24566.0 27378.0 20205.0 24565.0 23179.0 19924.0 25554.0 True False 5550.952516107389 20642.955653043988 26806.314151722607 27676.053081191276 30864.426017880476 18808.275907454015 23376.697102587048 24908.7346805771 15013.997167921865 23923.1218421199 0.2320329492421923 0.8628872013141389 1.1205190663923492 1.1568746446989133 1.2901504336085212 0.7861965520879258 0.9771591373760092 1.0411991731247172 0.6275935585249449 1.0 14.546118045518016 4.716687147130959 3.221123558331949 1.0097630043585772 0.13960794907555268 0.6268660496260285 0.17667526203815165 0.195533932756884 3.2910091465147113 0.04330478418080762 0.41403998352120414 52081.93930875093 -4.716687147130959 -0.8701550552830246 SLHDAIMIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLHDAIMIVR 10 0 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 183.67 1.6427000000000004e-06 1573220000.0 128122.0 169644.0 182594.0 166957.0 162040.0 157896.0 155112.0 107799.0 181872.0 141479.0 False True 127432.20538769249 175290.49798803643 208301.6480645006 188093.739081513 182674.83351367345 146981.02116720402 147608.6399746176 115843.50877223046 137052.08255994192 132449.68909373408 0.962117814391465 1.323449675023277 1.5726850662298377 1.4201146138470726 1.3792016784908816 1.1097120889667484 1.1144506339320706 0.8746227308261064 1.0347482391064786 1.0 17.0150849316328 2.4345337749451237 1.9074601802622448 0.9721963605903653 1.349091832978762 0.4988115994173883 0.1543860801841423 0.2722833203598884 2.017555933378535 0.0697623677033656 0.0541468341333492 271.9779994308209 -2.4345337749451237 0.3768954723883967 SLHDALCVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLHDALCVIR 10 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 185.6 1.4316999999999996e-06 1595150000.0 250630.0 368280.0 379910.0 353580.0 297400.0 295890.0 372870.0 269860.0 417980.0 352100.0 False True 249280.6359276106 380537.9771700392 433398.02576308313 398343.19174662564 335272.12717209646 275435.8207501398 354832.8535982748 289998.32352131425 314974.4296450502 329628.67655202386 0.7562468124288565 1.1544443922492906 1.314806801084498 1.2084603679308734 1.0171206300346927 0.8355942317617775 1.0764623312203636 0.8797727386911529 0.9555431673595278 1.0 18.33048223188438 3.023814738977053 7.966263013517216 0.9454146231338614 1.125288464644367 0.20250302126298636 0.14714343225331677 0.2821196133633666 75.1577961861792 0.04343263326031594 0.05143323267334137 1056.3667889131218 -3.023814738977053 0.17987384151050567 SLHDALCVLAQTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLHDALCVLAQTVK 14 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 177.38 2.1043e-06 496840000.0 512280.0 636390.0 675350.0 598750.0 492120.0 562620.0 693810.0 556130.0 918490.0 748910.0 False True 509521.941399659 657571.856444121 770433.4097525692 674551.6886087798 554788.5649762341 523727.4036650218 660247.7596884158 597631.2445709202 692140.4466354428 701113.9226258905 0.7267320259328759 0.9378958757248881 1.0988705043355231 0.9621142396978414 0.7912958894017933 0.746993301321844 0.9417125211486057 0.852402477378576 0.9872011156805456 1.0 19.419289358407067 -1.9409737527752606 7.808680388961339 1.0363651826544875 0.8948999621532977 0.07696090812532552 0.11017167675213746 0.06740623652261697 0.0005095274910924924 0.10309103865334181 0.02572363495100459 0.011455821742943163 1.9409737527752606 -0.14146522050118981 SLHDALCVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLHDALCVVK 10 0 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 93.096 0.009019 525930000.0 717500.0 879850.0 924970.0 813820.0 667170.0 827810.0 938160.0 747450.0 1231100.0 1016000.0 False True 713637.0597217445 909135.2753694436 1055197.7360166346 916849.5285571549 752130.1448735954 770585.4431551343 892777.6166807673 803228.5144741941 927711.90089483 951158.0101586374 0.75028234226059 0.9558193966298143 1.1093821686268983 0.9639297769297444 0.7907520483879987 0.8101550267411546 0.9386217717199972 0.8444743206654265 0.9753499323841083 1.0 19.859325501680775 4.745655860106042 24.147994609296884 0.9223173775640412 0.750282210572077 0.25836662971261304 0.09105463313502486 835.0384156304333 2841856.748511562 0.02339567937903042 0.23156722525587842 55674.44034849528 -4.745655860106042 -0.1720351669919642 SLHDPDGLVATYISEVHEHDGHLYLGSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLHDPDGLVATYISEVHEHDGHLYLGSFR 29 0 Q9HDC9;H0Y512 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein 0 ; 110.61 0.00010549 72951000.0 8977.5 16988.4 21139.9 18829.0 18524.5 18105.4 18443.3 4874.5 18585.3 11615.3 False True 8929.16613749402 17553.848624295348 24116.21416869524 21212.749469419126 20883.485271686262 16853.816313527233 17551.12711875202 5238.259942209461 14005.201845260899 10874.001609641364 0.8211481346091609 1.6142952019366394 2.217786518195174 1.950776745389754 1.9204967979009728 1.5499185045718502 1.614044925576471 0.4817233002398116 1.2879528942540597 1.0 13.408595326355343 1.8564060308610917 6.879550872988922 0.889049344253875 1.711000125536498 0.43257519307355097 0.3904794849371401 0.21716784252140453 11.332205416036345 0.17430028222106186 0.10683645658413254 71.84656857479705 -1.8564060308610917 0.8219507812826229 SLHINNIS(ph)PGNTISR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLHINNISPGNTISR 15 0 Q8IZ41 Q8IZ41 RASEF Ras and EF-hand domain-containing protein 1 SLHINNIS(1)PGNTISR 157.14 5.2669e-09 0.0 83624.0 124660.0 114580.0 119940.0 133480.0 130680.0 118240.0 107640.0 107430.0 108670.0 True False 83173.77767549986 128809.23274143864 130711.86805278652 135124.39170227468 150477.8868020559 121646.39918763124 112520.27947933623 115672.64338484494 80955.3159882476 101734.58756293217 0.8175565426463174 1.2661301905977485 1.28483214198838 1.328205037629782 1.4791221983277962 1.1957231272243747 1.1060179450743055 1.1370041021033364 0.7957501762924956 1.0 16.6344507221889 1.551542713126296 1.783205059991672 0.9076619170584939 1.2397355331918414 0.3254279873403304 0.17103376095682224 0.3734482934990685 2.3776011490096933 0.14314863219049365 0.04901283505331073 35.60760086057795 -1.551542713126296 0.3320736161333475 SLHLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLHLLK 6 0 Q16236-3;Q16236-2;Q16236 Q16236-3 NFE2L2 Nuclear factor erythroid 2-related factor 2 0 ; 99.511 0.038715 2055330000.0 4357800.0 4454900.0 4471500.0 4530600.0 3893800.0 4722300.0 5604700.0 3981000.0 5938200.0 5363300.0 False True 4334338.0889971 4603178.653456081 5101048.333025262 5104173.49546712 4389652.349639235 4395858.516098491 5333579.248966813 4278082.435108392 4474810.17780333 5021009.602247857 0.8632403505176846 0.9167834794411234 1.0159407643318532 1.0165631814729117 0.8742569119314233 0.8754929514834046 1.0622523499216219 0.8520362982761747 0.8912172117336724 1.0 22.25954605336244 3.222459578672158 24.9990272771072 0.9211240823880482 0.9550220013503525 0.029638437043142174 0.07312274059303935 892.7252656870205 1386073.6618728905 0.021583383898613504 0.025868496463190657 1669.0124590723353 -3.222459578672158 0.03389791896230432 SLHLS(ph)PQEQSASYQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLHLSPQEQSASYQDR 16 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 SLHLS(1)PQEQSASYQDR;SLHLS(1)PQEQSASYQDR;SLHLS(1)PQEQSASYQDR 226.23 3.9579e-15 968340000.0 362161.0 411189.0 441035.0 391338.0 387950.0 483361.0 478338.0 366407.0 448776.0 514887.0 True False 360211.1654158701 424875.17729600094 503128.89445505873 440881.35067521123 437353.13294019795 449947.391779405 455198.9635113897 393750.15091704624 338181.16809030826 482026.4708430617 0.7472850293592024 0.8814353629851418 1.0437785575864518 0.9146413679400472 0.907321816113687 0.9334495489271564 0.9443443276367149 0.8168641656305293 0.7015821506624548 1.0 18.878752849741417 -0.7782678450677127 5.434158593290768 1.000000018160188 0.8836502929576079 0.12885453417671666 0.09462302409736134 3.070162951916034e-08 7.0621856955339934e-09 0.09365231906614911 0.02207405836123833 0.166621927808861 0.7782678450677127 -0.11634972520258013 SLHPWYGITPTS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 SLHPWYGITPT(0.005)S(0.725)S(0.27)PK 120.9 0.0004882 0.0 118380.0 146340.0 128430.0 170190.0 150750.0 154570.0 172550.0 149040.0 230370.0 165130.0 True False 117742.65523325453 151210.83843560173 146511.82766642823 191736.03655002607 169947.11893474607 143884.9397186423 164203.09729498863 160162.121609785 173598.40029984753 154591.26202509442 0.761638489076709 0.9781331522544661 0.9477367979740364 1.240277322523585 1.0993319849291288 0.9307443243155995 1.062175799226828 1.036036057353528 1.1229509224891878 1.0 17.238099250430952 4.78899123744478 1.4909916786761062 1.061501055713415 0.6245452211276098 0.540045614249958 0.08292316873676546 1.0052418144231654 1.883676945674647 0.022512880900565576 0.6716785108663931 61516.44607010552 -4.78899123744478 -0.4369558345858052 SLHQVEISHCDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLHQVEISHCDAK 13 0 Q9Y2I1;C9J715;Q9Y2I1-4;Q9Y2I1-3 Q9Y2I1 NISCH Nischarin 0 130.72 8.0273e-05 202170000.0 157470.0 155530.0 170700.0 154050.0 171530.0 165970.0 182700.0 150470.0 261770.0 209060.0 False True 156622.19901656176 160706.72203012952 194733.07624900198 173552.71420489767 193373.32876203672 154496.8845513559 173862.10301822328 161698.8354711783 197260.29103829066 195717.6118147291 0.8002458111170088 0.8211152820639273 0.9949696117963103 0.8867506229801473 0.9880221149698498 0.7893867246735378 0.8883314148693232 0.8261843886805966 1.0078821686472543 1.0 17.578414058375646 1.225430822650429 24.950118593771304 1.003941230092458 0.8761573758209801 0.36974637769124175 0.06763150735360458 274.7036511511734 521994.4476311611 0.06296994907042394 0.01612669906606963 16.804702277749474 -1.225430822650429 -0.12778385427147787 SLHS(ph)AHSLASR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 SLHS(1)AHSLASR;S(0.001)LHS(0.999)AHSLASR;S(0.004)LHS(0.995)AHSLASR;S(0.001)LHS(0.997)AHS(0.002)LASR 159.58 1.8354e-05 1369340000.0 537449.0 801019.0 743640.0 806620.0 769794.0 770088.0 770554.0 425629.0 739121.0 655824.0 True False 534555.4343001968 827680.4331887894 848338.048165248 908738.009295389 867822.7029734916 716853.6291521619 733279.359217866 457391.5972802693 556974.5332639817 613968.750840825 0.8706557680144594 1.3480823446719203 1.381728381132519 1.480104660132751 1.4134639617814682 1.1675734769407025 1.1943268419013933 0.7449753699253836 0.9071708169205839 1.0 19.22780570307095 1.9075947305497991 3.815884420296701 0.8651911377808877 1.2947627277865024 0.5110831608090338 0.17086430182404488 0.17848912163201425 4.458626098426195 0.08474949344744155 0.04786116018105288 80.8341229437463 -1.9075947305497991 0.4295715900056146 SLIEEGGDWDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLIEEGGDWDR 11 0 Q15008;Q15008-4;Q15008-3;Q15008-2;C9J0E9;H7C531 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ;;; 196.37 1.4123e-07 1438290000.0 1475920.0 1622370.0 1441300.0 1485920.0 1478460.0 1542830.0 1490050.0 1432300.0 1512410.0 1524960.0 False True 1467973.8107101277 1676369.6047066231 1644222.5119958203 1674037.3196451906 1666733.117481025 1436177.7935311676 1417970.5889562324 1539185.4990720314 1139696.8207557057 1427635.7472160603 1.0282551509183824 1.1742278154463437 1.1517101019655132 1.172594145887438 1.1674778533188266 1.0059833513778038 0.9932299549947 1.0781360035803929 0.7983106496024315 1.0 20.445196500568535 2.684353101651748 5.46667952199598 0.9881444338102211 1.143407951589292 0.523622233212931 0.07759508180861108 0.18206224152887496 12.204448665131256 0.02492663791217368 0.023686314364670905 483.4517110612186 -2.684353101651748 0.155263517779071 SLIEEGGDWDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 SLIEEGGDWDRR 12 1 Q15008;Q15008-4;Q15008-3;Q15008-2;C9J0E9;H7C531 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ;;;; 247.13 2.116e-16 6449410000.0 2797730.0 3517740.0 3194800.0 3454520.0 3316690.0 3297680.0 3403370.0 2894720.0 3573400.0 3440790.0 False True 2782667.3325370224 3634825.849381267 3644600.0703005926 3891861.8778000837 3739050.811938197 3069719.1435037353 3238735.9909640416 3110738.705490318 2692783.451106807 3221195.8363914783 0.863861582428433 1.1284088375865886 1.1314431830333638 1.2082040569628683 1.1607648220875766 0.9529750128270892 1.0054452307352453 0.9657092780099644 0.8359576964197801 1.0 21.619164943053967 2.7263255363502306 24.139672161619977 0.9557056890024621 1.1081168609947978 0.3654134641082929 0.09606711206847449 525.9349888378975 1037661.5352717597 0.03148446416476144 0.029906998453202736 532.5072639168994 -2.7263255363502306 0.15241117199233567 SLIGS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLIGSPGR 8 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 SLIGS(1)PGR;SLIGS(1)PGR;S(0.001)LIGS(0.999)PGR;S(0.001)LIGS(0.999)PGR 99.864 0.006829699999999999 3480180000.0 2723380.0 3618030.0 3030020.0 3236860.0 3087100.0 3288710.0 3535840.0 2870430.0 3436880.0 3150850.0 True False 2708717.6246759626 3738453.941404678 3456620.478594029 3646646.144117271 3480223.886324744 3061369.218490624 3364797.9109794977 3084636.0623482014 2589906.97583253 2949760.055421596 0.9182840549004647 1.2673756072238755 1.1718310688494253 1.2362517884852409 1.1798328748564368 1.0378366921281927 1.1407022428129607 1.0457243994062182 0.8780059825789343 1.0 21.4921661743301 1.5240782365229366 2.9534779147534684 0.9396822772820607 1.1446068156101794 0.38613045985632133 0.09827813898113887 0.21957497160546233 4.090495446452474 0.06865121692587638 0.025243587349317146 33.425524943291194 -1.5240782365229366 0.20492453832811874 SLIGVEYKPVSATGAEDKDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLIGVEYKPVSATGAEDKDK 20 2 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 153.56 2.8958e-08 417910000.0 516310.0 345000.0 332600.0 239160.0 291360.0 450060.0 438300.0 433080.0 855480.0 487710.0 False True 513530.2443274334 356483.1164430956 379427.1889889752 269437.6314783725 328462.96897398075 418948.4115272833 417097.75453140296 465398.6287356797 644658.4168446991 456583.9302504617 1.1247225543959323 0.7807614171780964 0.8310130161191575 0.5901163261058509 0.719392311494188 0.9175715214012609 0.9135182534843083 1.0193057571701718 1.411916570281105 1.0 18.800520558362226 1.6499416769809632 2.1372740596969924 1.2046545549569712 0.8162927053151184 0.4449153531951776 0.16244645075702116 0.2423104962642468 2.392263583159084 0.11705489129809335 0.04526543789556519 44.662360938004 -1.6499416769809632 -0.3883618496418527 SLIGVEYKPVSATGAEDKDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLIGVEYKPVSATGAEDKDKK 21 3 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 187.86 1.1940999999999997e-17 861840000.0 1326910.0 823030.0 654700.0 651130.0 618010.0 1104130.0 1148040.0 1064930.0 2039540.0 1078860.0 False True 1319766.0639935604 850424.0560178587 746876.0692455859 733562.9912381364 696709.9102677444 1027804.0919424488 1092504.919261308 1144400.4842049698 1536922.6954358227 1010006.2311414852 1.3066910116999892 0.841998821192152 0.7394766945165123 0.7262955104832184 0.6898075366132538 1.0176215356422593 1.0816813654967106 1.1330627959706698 1.5216962510209755 1.0 19.945932762904402 2.119697904539675 1.6661210971591554 1.2363896990255323 0.8503024728945927 0.35802039734658 0.204988825072511 0.3956801311172635 2.108661211573514 0.12082914600876817 0.06623563879440603 131.73400773571436 -2.119697904539675 -0.3860872261309396 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETER ddPTM_BT-474_Trastuzumab_2h_R1 6 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 SLIPDIKPLAGQEAVVDLHADDS(0.514)RIS(0.486)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.572)RIS(0.427)EDET(0.002)ER;SLIPDIKPLAGQEAVVDLHADDS(0.638)RIS(0.362)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.5)RIS(0.5)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.565)RIS(0.409)EDET(0.025)ER;SLIPDIKPLAGQEAVVDLHADDS(0.71)RIS(0.29)EDETER 266.5 4.5783999999999987e-60 10816890000.0 1385697.0 1351167.0 1220908.0 1197735.0 1224110.0 1475397.0 1563374.0 1436681.0 1786375.0 1612455.0 True False 1378236.56131741 1396139.7767973011 1392801.2340774247 1349368.1281934637 1379993.1526315894 1373406.278100961 1487747.6269513518 1543893.4315382957 1346146.8174486242 1509546.741407822 0.9130135049889543 0.9248734991108947 0.9226618798027288 0.8938895969097495 0.9141771597907534 0.9098136814366578 0.985559165636607 1.0227529821954646 0.8917556379825583 1.0 20.52568399828784 2.2385693613942195 24.99999862026652 0.9821332520419991 0.9132222713039125 0.4556438034572382 0.032802770749171734 0.19085736739396733 540665.5873220515 0.011612392978622056 0.00913662242145893 173.20856409459137 -2.2385693613942195 -0.06891098073808655 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETERNGDDGTHDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDK 41 3 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 SLIPDIKPLAGQEAVVDLHADDS(0.333)RIS(0.333)EDET(0.333)ERNGDDGTHDK 113.4 2.9945e-06 127010000.0 102840.0 100310.0 103590.0 98589.0 86063.0 101950.0 123550.0 94185.0 162610.0 111360.0 True False 102286.32086659811 103648.75771132449 118174.57157957891 111070.35729144217 97022.61291463384 94902.43646448586 117573.41449316632 101213.56296173917 122536.94436236577 104252.9094599075 0.9811363672870378 0.9942049411214241 1.1335373966232114 1.0653933580065356 0.9306465730047158 0.9103097165934007 1.1277710627191797 0.9708464107724766 1.1753815312894433 1.0 16.669728120982615 1.262171893513401 24.99979228063629 1.087691081337224 1.0163611229613463 0.11475905796092523 0.08143901968505819 446.845064886623 473124.9777961049 0.05391082553249042 0.019659211746947836 18.288239203987924 -1.262171893513401 -0.07132995837587774 SLIPDIKPLAGQEAVVDLHADDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLIPDIKPLAGQEAVVDLHADDSR 24 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 ;;; 148.02 1.0103e-07 1093510000.0 955900.0 931890.0 859155.0 837623.0 885324.0 985860.0 910180.0 917370.0 1206670.0 1029950.0 False True 950753.5406104752 962907.3953105998 980116.5560908685 943665.9859165796 998064.7636735344 917709.8186648171 866151.1161747487 985828.8077104711 909302.3470496032 964217.7092154417 0.9860361737019724 0.9986410601129614 1.0164888559123886 0.9786855985920602 1.0351031246725733 0.951766193354334 0.8982941382392913 1.022413090206167 0.9430467189712564 1.0 19.87899940153944 2.7170916478607707 24.697559705529613 0.9638907962154253 1.0021488902709734 0.25294825067755167 0.0342450064709535 1048.5405352811624 1206221.9246001383 0.010999590036807928 0.010378557920110896 521.304708866187 -2.7170916478607707 0.03825809405554814 SLIPDIKPLAGQEAVVDLHADDSRIS(ph)EDETER ddPTM_BT-474_Trastuzumab_2h_R1 7 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 SLIPDIKPLAGQEAVVDLHADDS(0.011)RIS(0.989)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.077)RIS(0.923)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.001)RIS(0.999)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.337)RIS(0.662)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.277)RIS(0.722)EDET(0.001)ER;SLIPDIKPLAGQEAVVDLHADDS(0.002)RIS(0.998)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.098)RIS(0.902)EDETER 278.02 7.894199999999996e-74 16908014000.0 2581271.0 2388197.0 2399199.0 2295236.0 2177635.0 2830180.0 2771489.0 2544446.0 3277253.0 2717477.0 True False 2567373.7237421707 2467686.6934494297 2736985.3649884537 2585812.6422641515 2454943.9093961264 2634536.318127104 2637421.4889538693 2734325.4809549917 2469617.9110903116 2544045.2913108924 1.0091698180496063 0.9699853622408913 1.0758398737383104 1.016417691578021 0.9649764954188949 1.035569738921426 1.0367038267604356 1.0747943404521905 0.9707444751574253 1.0 21.278692924289203 SLKDMEESIR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLKDMEESIR 10 1 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;;; 188.96 9.6978e-07 5805760000.0 5876730.0 8675880.0 8020670.0 8495950.0 7731510.0 8170250.0 9686990.0 7883580.0 12296330.0 8690400.0 False True 5845090.338646082 8964651.421119783 9149910.619086597 9571536.398890631 8716071.970249945 7605459.848199758 9218393.285804592 8471892.771608084 9266064.233880388 8135771.2317742435 0.7184433008413621 1.101880960726667 1.124651905568784 1.176475607070785 1.0713270717604912 0.9348173186700045 1.133069382506992 1.0413140352965087 1.1389288083337183 1.0 22.955847682218582 4.740494290182861 24.990539303989497 1.0816928380295674 0.7184431773569425 0.7142341317499588 0.06865592424731598 91.35629392075712 1180589.8552967554 0.016269176140053562 0.1065718185185254 55016.668723476665 -4.740494290182861 -0.3632496606726249 SLKEEGVQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLKEEGVQR 9 1 P40222 P40222 TXLNA Alpha-taxilin 0 97.456 0.0060909 167290000.0 273570.0 270210.0 281590.0 263250.0 220070.0 300780.0 295820.0 287930.0 373000.0 312280.0 False True 272097.12951648404 279203.7765046055 321235.4243758436 296577.4230083694 248094.61004291597 279987.7865599611 281510.0564578586 309416.7986789146 281079.1479439299 292350.02304364095 0.9307238175789929 0.9550325106795937 1.0988041698491358 1.0144600637301726 0.8486218248249678 0.9577142619830256 0.9629212733663297 1.0583778836669564 0.9614473261114518 1.0 18.15733717947002 -1.2327387227988231 4.463983912531858 1.0000070017022 0.9813685790465362 0.006509107925487645 0.06556940184454885 4.766627815184523e-06 8.193374801708637e-07 0.0662327137771281 0.015605335819623903 0.058514200730484606 1.2327387227988231 -0.018638422655663844 SLKES(ph)EQES(ph)EEEILAQK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLKESEQESEEEILAQK 17 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 S(0.408)LKES(0.602)EQES(0.99)EEEILAQK;SLKES(1)EQES(1)EEEILAQK;SLKES(1)EQES(1)EEEILAQK;S(0.008)LKES(0.992)EQES(1)EEEILAQK 216.87 2.9327e-15 1816640000.0 4049520.0 2608500.0 2331670.0 1972540.0 2288020.0 3659420.0 3364910.0 3560620.0 5279660.0 3558350.0 True False 4027717.8342639664 2695322.345628454 2659948.8687610477 2222263.3617509147 2579385.7848429694 3406452.9087480977 3202136.448095512 3826331.5448620077 3978558.5368194263 3331253.056543292 1.2090699103007707 0.8091016503037094 0.79848298031167 0.6670953314056749 0.774298962300839 1.0225740437392161 0.9612408285242193 1.1486162954046004 1.1943129114747641 1.0 21.667633520920663 2.26141108337999 1.698747473466424 1.1177327173481746 0.8417450685023642 0.3447046506737119 0.14641593197842243 0.3851946012668748 2.2244905458219675 0.07780491940509378 0.04938312904275124 182.5622936267784 -2.26141108337999 -0.2759876488458104 SLLDS(ph)DDSSDLLDFALSASRPESR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLDSDDSSDLLDFALSASRPESR 24 1 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 SLLDS(1)DDSSDLLDFALSASRPESR;SLLDS(1)DDSSDLLDFALSASRPESR 140.8 1.7527e-07 71164000.0 17144.6 19902.3 17638.1 20732.4 18407.8 24952.0 23778.0 18102.5 25647.0 19727.6 True False 17052.295378544124 20564.7360243056 20121.391166886464 23357.119714259145 20751.92421842135 23227.126970690046 22627.76729921901 19453.400472632424 19326.640502192942 18468.567678351897 0.9233144483928838 1.1134992373236796 1.0894938642411311 1.2646957858912582 1.1236347387537753 1.2576571922204849 1.2252042331221147 1.0533248063105027 1.04646125453718 1.0 14.172784362628539 4.913144542058176 1.8468776932389193 1.1436504979875413 0.7700474226552483 0.33465359712361387 0.08702439948079492 1.6666642379705996 3.9826434545624108 0.02264503527718118 1.246645377789667 81873.7235238984 -4.913144542058176 -0.373603075332293 SLLDSDDSSDLLDFALSASRPESR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLDSDDSSDLLDFALSASRPESR 24 1 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 0 ; 236.6 1.8663999999999998e-37 141246000.0 84407.0 107590.0 90379.0 97168.0 101580.0 96783.0 107860.0 96587.0 101860.0 103398.0 False True 83952.5620904994 111171.06811047152 103103.57761164929 109469.45883714056 114515.6108881692 90092.61901267608 102642.39973478681 103794.81239884823 76757.9678540716 96799.05111651863 0.8672870355872011 1.148472705343496 1.0651300443796892 1.1308939248316634 1.1830241057872029 0.9307179974753067 1.0603657634126438 1.0722709696183765 0.7929619863905149 1.0 16.56270528493979 1.260943385399263 24.970860021124956 0.8964809935088994 1.0634900846211965 0.2836207962430959 0.10183305744666529 228.48901009105097 254910.00743633462 0.06420904588712127 0.023409618161064058 18.236579548898618 -1.260943385399263 0.16700909111229711 SLLEAVSFLHANNIVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLEAVSFLHANNIVHR 17 0 J3KNN3;P15735-2;P15735;H3BTI9;H3BP07;H3BTW6 J3KNN3 PHKG2 Phosphorylase b kinase gamma catalytic chain, liver/testis isoform 0 128.64 2.0971e-05 124690000.0 32226.0 40497.0 35523.0 38518.0 41485.0 39510.0 41066.0 29997.0 48987.0 41269.0 False True 32052.498796645188 41844.918164046554 40524.3296285489 43394.37485066047 46767.86884914057 36778.76669653589 39079.48069264562 32235.52846167959 36914.81024216965 38635.1770878315 0.829619564672331 1.0830782027714838 1.0488972144846826 1.1231830192471908 1.2104996631132443 0.9519502554090711 1.0114999758847762 0.8343569485496797 0.9554714906120181 1.0 15.237627390241236 2.3166390407267716 2.4444021534444422 0.9213352847174648 1.0621996102300675 0.17960400576498237 0.10304644427016481 0.392112303459231 4.80771440123745 0.04314836540086755 0.03217297713154038 207.3189691461529 -2.3166390407267716 0.14086432551260264 SLLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHR 40 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;J3QLU9 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 0 ;;;;; 199.86 2.8028e-31 639210000.0 108152.4 151834.8 176868.1 153983.6 206599.4 232190.0 152265.7 80947.6 184820.5 152515.4 False True 107570.11949526115 156888.52953192507 201769.59111491562 173477.9079717057 232908.60897941768 216139.25181646828 144900.02637953946 86988.32095558404 139273.9642428179 142781.73659699666 0.7533885079355719 1.0987997013563788 1.4131330513538503 1.2149866790130825 1.6312212929361218 1.5137737988614341 1.0148358594945632 0.6092398301689643 0.97543262578407 1.0 17.123451928551667 2.0154527967103766 8.566878026766775 0.8163230780371779 1.2822842924971973 0.3576990051465142 0.2474586631812423 0.17313039894772203 76.69618491450457 0.09937595043253884 0.07185346066984234 103.62219717678292 -2.0154527967103766 0.4659612144600195 SLLENDQLLSHGGQDLSADAFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLENDQLLSHGGQDLSADAFHR 23 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 ; 327.1 1.1331999999999996e-86 519850000.0 147644.0 192136.0 168851.0 182367.0 171381.0 150342.0 173308.0 137711.0 209262.0 165828.0 False True 146849.10110879046 198531.1306113351 192623.75312079804 205454.6435014902 193205.35449522865 139949.21140700084 164924.4299391474 147987.69410228892 157692.18406713827 155244.7150675064 0.9459201303241453 1.278826983095728 1.2407749470701002 1.323424397488511 1.2445212992353105 0.9014748833552596 1.0623513326520126 0.9532543123154831 1.0157652323209045 1.0 17.244184630639875 2.7480040371019805 24.640777843081 0.9875111137708478 1.219079434523127 0.533326173587518 0.10262686442660308 411.2448259327391 1073063.4442653721 0.03088236530831693 0.0323442669890139 559.762804897684 -2.7480040371019805 0.2315683207522793 SLLENQSLSSS(ph)CESLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLENQSLSSSCESLK 16 0 Q14789;Q14789-2;Q14789-4;Q14789-3;E7EU81 Q14789 GOLGB1 Golgin subfamily B member 1 1 SLLENQSLS(0.001)S(0.063)S(0.936)CESLK;SLLENQS(0.013)LS(0.018)S(0.071)S(0.898)CESLK 366.7 3.608299999999998e-104 83166000.0 227433.0 223736.0 191844.0 178207.0 184557.0 241736.0 246567.0 206284.0 272774.0 220037.0 True False 226208.52599818178 231182.91750873203 218853.9676620594 200767.9879280248 208059.23999495796 225025.3593053353 234639.61223259053 221677.95956892747 205552.5026843365 205994.05027684642 1.0981313571638018 1.1222795862212183 1.0624285864952403 0.974630032557746 1.0100254823638646 1.0923876636383996 1.1390601423548194 1.076137681020411 0.9978565031761039 1.0 17.65224314310721 4.153240683263421 5.70810023087336 1.050572090766845 1.1098370072334243 0.22460537087689791 0.048288847778051154 0.3403826026211924 17.42514642547069 0.01337250547114508 0.030031905091195438 14231.172512288682 -4.153240683263421 0.059264916466579276 SLLGDSAPTLHLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLGDSAPTLHLNK 14 0 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 0 169.09 3.3869e-06 271550000.0 312450.0 344560.0 343390.0 337720.0 274610.0 366030.0 363840.0 368170.0 460340.0 331480.0 False True 310767.8039164581 356028.47130908136 391736.3272006135 380475.31737278827 309579.9557590092 340727.2076419399 346239.6691962256 395644.7149293792 346895.37523996946 310324.66260569385 1.0014279925644431 1.147277397547548 1.2623435208511393 1.2260556868992059 0.9976002331222029 1.097970121939281 1.1157336522626506 1.2749380329854578 1.1178466201403505 1.0 18.243418831970647 SLLGDSAPTLHLNKGT(ph)PS(ph)QSPVVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 SLLGDSAPTLHLNKGT(1)PS(0.585)QS(0.415)PVVGR 233.86 3.4555999999999997e-37 1091700000.0 929080.0 960950.0 904530.0 841430.0 934600.0 1257500.0 1250600.0 1069300.0 1590500.0 1250400.0 True False 924077.9365104913 992934.6398434581 1031879.9616842993 947954.9517262375 1053615.7701917982 1170571.9848365963 1190103.7002440603 1149096.5957953802 1198542.5866080972 1170598.4014787013 0.7894064568541995 0.8482282553856061 0.8814978393792673 0.8098037298947101 0.9000659567456009 0.9999774332152926 1.0166626733307682 0.981631782807699 1.0238717096265437 1.0 20.15881478302091 2.8940987984774313 2.8719940599426224 1.003341919345455 0.8371384676508178 0.9105423485902597 0.025501247557368396 0.07489995253460126 1.1954384399768065 0.008221970458123652 0.008968785491703088 783.607886938998 -2.8940987984774313 -0.16620345169463713 SLLGDSAPTLHLNKGT(ph)PSQS(ph)PVVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 SLLGDSAPTLHLNKGT(0.955)PS(0.155)QS(0.89)PVVGR 241.22 2.023e-37 1561000000.0 684070.0 588200.0 622890.0 636040.0 612740.0 820380.0 808040.0 718650.0 1127800.0 939480.0 True False 680387.0431273215 607777.8814255912 710587.4977430634 716562.5987853492 690768.8070054824 763669.0615667963 768952.0181874385 772279.3122307581 849868.8017457471 879521.5820707062 0.7735876606068595 0.6910323678410099 0.8079250267743152 0.8147186076984106 0.7853915368161487 0.8682777968550222 0.8742844221935434 0.8780674948447977 0.9662853295138638 1.0 19.74635945402644 2.2521644325617185 0.32298531784854284 1.0166215683559874 0.7038664780623335 0.8605470844182599 0.03252721251085235 0.5664767544430288 0.1520893824439035 0.04340245080410479 0.0633934685203618 178.71641027812657 -2.2521644325617185 -0.3127550902936539 SLLGDSAPTLHLNKGTPS(ph)QS(ph)PVVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 SLLGDSAPTLHLNKGT(0.416)PS(0.587)QS(0.997)PVVGR 147.54 1.3309e-07 772940000.0 595800.0 546880.0 585230.0 574780.0 667950.0 847010.0 775050.0 673400.0 1130200.0 936210.0 True False 592592.2789996023 565082.570204059 667625.2970896511 647547.0890664787 753009.4732501744 788458.1923470743 737557.8705214771 723652.5274559128 851677.3539040996 876460.2762702937 0.6761199509478412 0.6447326655906443 0.7617290996126794 0.7388208075123076 0.8591484333489086 0.8995937564932146 0.8415188805362581 0.8256535373575149 0.9717238498569999 1.0 19.741329179766698 6.405199367277788 0.16700927313608088 1.026315791683504 5.368497432353941e-10 0.8387452523055076 0.04492372080243755 14.511225830853661 0.2478635210641596 0.1394842345359212 3.3689991650602273 2542139.432567607 -6.405199367277788 -1.0263157911466543 SLLHGDFHAFSAGPGLFSYIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLHGDFHAFSAGPGLFSYIR 21 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 152.04 3.2562000000000004e-08 145200000.0 41634.0 78205.0 77220.0 70436.0 81499.0 69959.0 71845.0 49102.0 94308.0 66072.0 False True 41409.847169972265 80808.00614907911 88091.90479172769 79353.19037803423 91877.41456758126 65122.89899577214 68369.58287544739 52766.240574903844 71067.05706245608 61855.22839291491 0.6694639765442282 1.306405428426728 1.424162630718182 1.2828857388411743 1.4853621424523782 1.0528277186546047 1.105316149528253 0.8530603143152867 1.1489256269660193 1.0 15.916607925563241 2.5064953297962114 22.900267273785236 1.0103348200300384 1.2528242676922292 0.17117304740920802 0.21922260452433928 380.2239503709353 296425.14800306276 0.07113738047130053 0.06692226986515064 320.9928285927658 -2.5064953297962114 0.24248944766219083 SLLIDFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLIDFFR 8 0 Q9H7B2;Q5VXN0 Q9H7B2 RPF2 Ribosome production factor 2 homolog 0 ; 105.57 0.01015 114117000.0 203593.0 270560.0 257590.0 236640.0 181429.0 201272.0 216875.0 199401.0 292400.0 220340.0 False True 202496.87790930865 279565.42604302656 293856.43298758316 266598.59973675443 204532.90773606673 187358.54038332507 206383.92770704508 214281.31515776133 220341.93795926287 206277.71255743504 0.9816711432308827 1.3552866307123976 1.4245670525639704 1.2924256160855183 0.991541476780326 0.9082830038226152 1.0005149133577893 1.0388001326032632 1.0681810226973107 1.0 17.654228426927077 3.238418912011684 24.999998620685886 1.0012734899857239 1.2815503975563738 0.5564163076880675 0.11426532826696108 2.717317471016168 479420.6864757009 0.032896892350752 0.04177096249913052 1731.485711419023 -3.238418912011684 0.28027690757064994 SLLLAGAAEYDNFFQHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLLAGAAEYDNFFQHLR 18 0 Q7Z460;C9J151;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 0 ; 174.59 5.4496e-12 216416000.0 172898.0 189740.0 186524.0 189501.0 177992.0 238230.0 203215.0 192676.0 255352.0 231142.0 False True 171967.13637877378 196055.38119974776 212784.95790432813 213491.80717002452 200658.22615876183 221761.7208330992 193384.7140933128 207054.46150890365 192423.92114149686 216390.31966937793 0.794708084176417 0.9060265796515303 0.9833386180557503 0.986605165592518 0.9272976095480929 1.0248227424033027 0.8936846823313754 0.9568563964657083 0.8892445902178099 1.0 17.72327643535126 4.657952594103339 2.884114523614078 0.9550431609727642 0.7804584799698708 0.5783684795109769 0.04214948668899622 0.22483806937348305 2.872320766961476 0.009840024594389644 0.08262917469355324 45493.83981333695 -4.657952594103339 -0.17458468100289337 SLLLEPPRGT(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLLEPPRGTPDR 13 1 Q53GT1-3;Q53GT1 Q53GT1-3 KLHL22 Kelch-like protein 22 1 SLLLEPPRGT(1)PDR 100.45 0.0015218 0.0 322880.0 514560.0 469450.0 573430.0 465850.0 510450.0 484220.0 358100.0 400100.0 457360.0 True False 321141.6499553408 531686.8185419111 535544.4794674509 646026.1792048968 525173.2361907235 475163.7929700524 460796.42869996716 384823.2403949552 301500.7160653248 428170.8932344036 0.7500314828255519 1.2417631066080836 1.2507727356755782 1.5088045203745963 1.2265505303818391 1.109752672304893 1.0761974622308168 0.8987608603845064 0.7041597661807133 1.0 18.707827200067637 1.9326075824015219 1.7365411211511903 0.8413899113531664 1.209827862181195 0.3546470902982217 0.18854566556582164 0.37672507549769657 2.114292392941067 0.12498368354632185 0.058741792418861 85.62637970922734 -1.9326075824015219 0.36843795082802866 SLLNEIESIYDER ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLNEIESIYDER 13 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 0 192.68 5.8344e-06 94716000.0 65395.0 67123.0 69552.0 63895.0 61536.0 72969.0 72267.0 63224.0 76512.0 68631.0 False True 65042.9205860675 69357.14847828972 79344.3170431785 71984.10044869805 69372.24484755243 67924.82478054988 68771.16912325083 67942.09592496685 57656.642808273325 64250.910822044745 1.0123268254704805 1.0794733894183646 1.2349134981593932 1.1203592218026583 1.0797083490332489 1.0571807296036744 1.0703532174621744 1.057449537379253 0.8973669333336688 1.0 15.971429285671267 1.423667489158865 3.6207389633176144 0.9499716889326253 1.0961566986259017 0.4721269064484319 0.05966604378552751 0.19940508239778007 4.586346596908325 0.04651928913922941 0.01614225026054837 26.525738822186323 -1.423667489158865 0.1461850096932764 SLLNEIESVYDEHQEQHSEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLNEIESVYDEHQEQHSEGR 21 0 O75182-2;O75182;M0QYC5 O75182-2 SIN3B Paired amphipathic helix protein Sin3b 0 ; 173.36 2.5467e-12 86091000.0 47110.0 53601.0 51804.0 54298.0 52899.0 53136.0 51869.0 28063.0 69111.0 42927.0 False True 46856.36499441307 55385.07688251128 59097.55291156003 61172.12123270063 59635.37409306227 49462.83338868974 49359.898311177974 30157.20356102658 52079.52008995421 40187.362108346315 1.1659477640778442 1.3781714941426482 1.470550685865653 1.5221730918237126 1.4839335294584288 1.2308056760564796 1.2282442967543437 0.7504151051199098 1.2959178547112966 1.0 15.294454261795416 2.2051895207232755 2.2587154957207307 0.993777912137365 1.4056441411651273 0.4892887429895668 0.1623202401875079 0.22409387355215504 2.3107799017846142 0.07503870894505035 0.04949998005910091 160.3945179764364 -2.2051895207232755 0.41186622902776227 SLLNHT(ph)PPSGRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLNHTPPSGRPR 13 1 B3KRP1;Q9UKI8;Q9UKI8-2;F8W7X8 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 SLLNHT(0.999)PPSGRPR 72.446 0.057942 78707000.0 49223.0 62688.0 58888.0 57658.0 57062.0 61981.0 65738.0 62454.0 73936.0 72779.0 True False 48957.98883718941 64774.5321843038 67178.9185363281 64957.496888192094 64328.507467028125 57696.39935758019 62558.00179645291 67114.63461498616 55715.4634916418 68134.18191076326 0.7185525306711791 0.9506906866386146 0.9859796749935841 0.9533760451291287 0.9441444171338329 0.8468054908642823 0.9181588454145734 0.9850361849634826 0.8177314518080439 1.0 16.056091138154002 4.741171438625564 24.845230949985748 0.9345853774497963 0.7185524472950656 0.5667056829133014 0.05639109624237419 157.90803734851116 1502598.8935971581 0.013093407040609937 0.0896978987904006 55102.51717797646 -4.741171438625564 -0.21603293015473068 SLLQDAAIEEVEMEDFDANIEEQKEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLQDAAIEEVEMEDFDANIEEQKEEK 27 1 P49750;P49750-1;H0YIQ2;P49750-3;F8VU51;H0YI23;U3KQT9 P49750 YLPM1 YLP motif-containing protein 1 0 171.29 4.2562e-12 35106000.0 35810.0 22702.0 24501.0 21632.0 20531.0 33704.0 35402.0 30251.0 52728.0 36130.0 False True 35617.20293886502 23457.62234635121 27950.52783349033 24370.60898202106 23145.501153229 31374.121810681994 33689.470011226826 32508.483231465445 39733.89091900139 33824.152467550775 1.0530109504749428 0.6935169290303814 0.8263482096204684 0.7205090801728445 0.6842891680858421 0.9275656453116092 0.996018157248636 0.9611026695392436 1.1747194835737607 1.0 15.045766164566329 2.47828649851143 3.5625245609619047 1.0196724142840599 0.7874200219137588 0.4968235354850169 0.11199332770298334 0.19646522668043528 5.373437458169535 0.03879373303845229 0.03365729182373672 300.80600269388884 -2.47828649851143 -0.23225239237030104 SLLS(ph)PLHR ddPTM_BT-474_Trastuzumab_2h_R1 7 SLLSPLHR 8 0 Q9BY84 Q9BY84 DUSP16 Dual specificity protein phosphatase 16 1 SLLS(1)PLHR;SLLS(1)PLHR;SLLS(1)PLHR;SLLS(1)PLHR;SLLS(1)PLHR;SLLS(1)PLHR;SLLS(1)PLHR 128.03 0.00074125 2555953000.0 1557076.0 1917528.0 1770226.0 1854707.0 1817122.0 1983270.0 1944851.0 1599652.0 2019428.0 1979650.0 True False 1548692.875823408 1981351.7603098454 2019458.4337197768 2089512.7160326047 2048521.7157740896 1846171.2130154066 1850771.1270776931 1719026.1551082653 1521767.028348831 1853307.0421363658 0.8356375066908398 1.0690898568139462 1.089651303214109 1.127450912625874 1.1053331526829433 0.9961496778684155 0.9986316810970786 0.9275452561420634 0.8211089656221464 1.0 20.821670485482453 1.945445664331856 1.8130407367125947 0.9043451084241053 1.050161851317274 0.2763054644557883 0.08689938125272875 0.41848398276396787 2.555247074523753 0.055201541454071676 0.026543532071229232 88.19534518329267 -1.945445664331856 0.1458167428931686 SLLSHEFQDET(ph)DTEEETLYSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLSHEFQDETDTEEETLYSSK 22 0 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 1 S(0.033)LLS(0.163)HEFQDET(0.689)DT(0.115)EEETLYSSK;SLLSHEFQDET(0.934)DT(0.066)EEETLYSSK 143.89 3.8361e-07 132512000.0 69689.0 104964.0 62658.0 53187.0 69255.0 81983.0 70986.0 61229.0 125548.0 65291.0 True False 69313.8021671757 108457.66328792209 71479.70176690072 59920.46874661401 78074.21374345494 76315.70817722361 67552.13598714607 65798.2188945621 94608.37765700923 61124.07248156263 1.1339853408505038 1.7743854243454915 1.1694198188195288 0.9803088425544343 1.2773071324232383 1.248537688653572 1.105164188913008 1.0764698133359711 1.5478088061875581 1.0 15.899453047812235 4.094368757608647 24.999999993247993 1.1689204611941204 1.4586310230294481 0.21817594675252117 0.2105848148551335 20.138366957168998 5324.829055994588 0.0486433238509217 0.1050815939073092 12427.070370376137 -4.094368757608647 0.28971056183532773 SLLSHEFQDETDT(ph)EEETLYSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLSHEFQDETDTEEETLYSSK 22 0 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 1 S(0.001)LLS(0.001)HEFQDET(0.272)DT(0.727)EEETLYSSK 121.3 0.00010117 70251000.0 21346.0 25876.0 24725.0 21000.0 23324.0 29380.0 25352.0 26588.0 31171.0 28714.0 True False 21231.075507763566 26737.267017627673 28206.06508644741 23658.59784682148 26294.17314782103 27349.029753080864 24125.62690595508 28572.13157112836 23489.324720000626 26881.447936707795 0.7898040149381835 0.9946364154408798 1.0492762574716368 0.8801087613481798 0.9781531563973228 1.0173942198900143 0.8974824184604461 1.0628940687421775 0.8738117371990564 1.0 14.714323228783979 4.742076774377968 24.56076308384856 0.9761665403240847 0.7898039242801572 0.4201082535512508 0.06432288007958455 240.2627577284285 1678167.0471117238 0.014254930733158911 0.10419233579001526 55217.504390253795 -4.742076774377968 -0.18636261604392745 SLLSNVS(ph)IEDEEEELVAIVR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLLSNVSIEDEEEELVAIVR 20 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR 244.74 6.818799999999999e-30 291548000.0 82542.8 98381.8 91434.40000000001 91056.0 101984.5 100644.3 83829.59999999999 78015.3 97249.09999999999 95848.6 True False 82098.39873616713 101656.37873994603 104307.5687579482 102583.68026381802 114971.6215655098 93686.99643219866 79774.44198782943 83837.19783966633 73283.36237617688 89731.46028788498 0.9149343883713834 1.1328956244978337 1.1624414494459219 1.1432298096420066 1.2812855290290266 1.0440819321520363 0.8890353698902201 0.9343121974243134 0.8166964199742459 1.0 16.453326269307468 2.3991235723600375 4.359106527570304 0.9084616048274554 1.13307134758423 0.5384807919995751 0.09435950052845032 0.15977907856745976 5.776076631880926 0.03359963148739292 0.027927724540990736 250.68224324768434 -2.3991235723600375 0.2246097427567746 SLLSS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLLSSPTK 8 0 Q92667-2;Q92667;I3NI36 Q92667-2 AKAP1 A-kinase anchor protein 1, mitochondrial 1 SLLS(0.096)S(0.901)PT(0.002)K;SLLS(0.059)S(0.941)PTK 148.9 0.000539 608440000.0 2059000.0 2031400.0 1908870.0 1659870.0 1521280.0 2408200.0 2100200.0 1999990.0 3023100.0 2238600.0 True False 2047914.572776408 2099013.9209927684 2177622.303804522 1870009.3718096935 1715005.9906670023 2241726.802293037 1998605.3024568816 2149239.409543441 2278097.512464597 2095730.6314381147 0.9771840627109148 1.0015666562798677 1.0390754761790222 0.8922947175355601 0.8183332175138106 1.069663614524133 0.9536556237122017 1.025532278482091 1.087018282927582 1.0 20.999021865559182 1.7972084680397562 1.591726138408063 1.0456617378490622 0.9598968165496543 0.1804157981890412 0.07014669706851374 0.6568386522929591 3.1922293025037525 0.05384465407112502 0.02220991288731441 62.69147211797772 -1.7972084680397562 -0.08576492129940794 SLLWLSLAHNRIQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLLWLSLAHNRIQDK 15 1 Q8N4P6-2;Q8N4P6 Q8N4P6-2 LRRC71 Leucine-rich repeat-containing protein 71 0 65.805 0.055134 1347700000.0 547430.0 629510.0 518880.0 581180.0 584980.0 671380.0 675250.0 644580.0 867230.0 714110.0 False True 544482.6977051906 650462.8598031687 591933.7938141889 654757.3284102726 659473.7355518921 624969.080858524 642585.5777945003 692681.8327109196 653512.7867866325 668534.8884196706 0.8144417099790809 0.9729677105420453 0.885419450903218 0.9793914121042113 0.986446252806345 0.9348339057305887 0.9611848071437062 1.0361191984285654 0.9775298164789149 1.0 19.35064332576017 6.715125157544332 0.44773002367270137 0.9942456618837943 8.525579708533418e-18 0.6006996494980749 0.03794691938805904 18.829961736924176 0.7001593399868548 0.023066585541400748 14.432421886822272 5189495.713284784 -6.715125157544332 -0.9942456618837943 SLMS(ph)S(ph)PEDLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLMSSPEDLTK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 SLMS(1)S(1)PEDLTK 115.8 0.0011213 0.0 97951.0 81980.0 59985.0 71601.0 78288.0 85027.0 82339.0 83774.0 127160.0 85447.0 True False 97423.64269937923 84708.65474204358 68430.3666010334 80665.67925858402 88257.51275066931 79149.28362202889 78355.9480044745 90025.64127575245 95823.12185670277 79993.69930514284 1.217891453272443 1.0589415851230375 0.8554469563909013 1.0084004110233462 1.103305804298454 0.9894439725822297 0.9795264962754003 1.125409151692584 1.197883366928403 1.0 16.28759875030944 1.6645571616885102 7.2405378679963555 1.121423330446589 1.0253859236199023 0.10748677182477806 0.09874503135496816 0.23752041022046724 23.655576272431034 0.05017885170479083 0.025737938045932864 46.1909784299421 -1.6645571616885102 -0.09603740682668671 SLNFQEDDDTSRET(ph)FASDTNEALASLDESQEGHAEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 SLNFQEDDDT(0.293)S(0.293)RET(0.391)FAS(0.022)DT(0.001)NEALASLDESQEGHAEAK 131.16 1.6089e-08 84896000.0 24372.0 24611.0 22317.0 21275.0 23653.0 32252.0 29112.0 30489.0 46822.0 39741.0 True False 24240.783859983752 25430.162257336327 25459.039617158633 23968.412818625093 26665.069347685243 30022.495153041666 27703.741341360215 32764.244000004976 35283.34548265595 37204.69535601814 0.6515517363606801 0.6835202388835796 0.6842964140288395 0.6442308582093529 0.7167124765442264 0.8069544681323482 0.7446302429373051 0.8806480925721412 0.9483573281550496 1.0 15.183197085274585 1.7494977093291162 0.659739655701985 1.0098662128491827 0.6630030348095953 0.9323784103529127 0.03143212177272302 0.15929973653954393 0.1420926447144126 0.02935119851388824 0.015303494254032818 56.16913157268486 -1.7494977093291162 -0.3468631780395873 SLNS(ph)TPPPPPAPAPAPPPALAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLNSTPPPPPAPAPAPPPALAR 22 0 Q8TE68;B4DKV7;Q8TE68-2;K7ELW3;Q8TE68-4 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 SLNS(0.5)T(0.5)PPPPPAPAPAPPPALAR 233.29 2.1698e-30 492340000.0 221550.0 214580.0 247520.0 240950.0 241380.0 256720.0 285060.0 213460.0 231620.0 224160.0 True False 220357.19941651882 221722.16558365096 282368.6645175919 271454.2452948396 272118.31222865015 238973.55065387752 271270.55876505066 229389.4691279168 174540.3545489891 209853.9168869688 1.0500504478799282 1.0565548114266299 1.345548697428797 1.2935390929160016 1.2967035176913952 1.13876144986416 1.2926637862621455 1.0930911966321324 0.8317231202455934 1.0 17.679025865564704 1.453792432678153 4.330154477546079 0.920472370114623 1.2126678564882611 0.5561608417661361 0.10440151846183959 0.14821174915576524 5.361356367522185 0.0738344351699477 0.02784067899660063 28.43101946489555 -1.453792432678153 0.2921954863736381 SLNST(ph)PPPPPAPAPAPPPALAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLNSTPPPPPAPAPAPPPALAR 22 0 Q8TE68;B4DKV7;Q8TE68-2;K7ELW3;Q8TE68-4 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 SLNS(0.235)T(0.765)PPPPPAPAPAPPPALAR;S(0.001)LNS(0.324)T(0.675)PPPPPAPAPAPPPALAR;SLNS(0.227)T(0.773)PPPPPAPAPAPPPALAR 183.21 4.848200000000002e-16 818720000.0 583080.0 576020.0 534390.0 531360.0 532010.0 658600.0 598780.0 507490.0 627910.0 632420.0 True False 579940.7620662779 595192.4774885568 609627.4669988528 598630.1215184322 599758.3200296798 613072.5321776401 569814.7238382684 545361.4807820048 473169.9940629305 592058.4141579979 0.9795330126184368 1.0052935035726431 1.0296745260614881 1.0110997617858033 1.0130053144884907 1.0354933187623516 0.9624299059217601 0.9211278274924888 0.7991947800215865 1.0 19.175379997687283 1.8314921015571002 2.4979835333818796 0.8927901467180165 1.0121188333685682 0.4870321238859724 0.04800400313450989 0.20177239620840998 2.347300138499878 0.026269976685413966 0.012644340180644534 67.84097822580168 -1.8314921015571002 0.11932868665055174 SLNST(ph)PPPPPAPAPAPPPALARPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLNSTPPPPPAPAPAPPPALARPR 24 1 Q8TE68;B4DKV7;Q8TE68-2;K7ELW3;Q8TE68-4 Q8TE68 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 S(0.023)LNS(0.433)T(0.544)PPPPPAPAPAPPPALARPR 65.775 0.060901 333770000.0 139670.0 195020.0 158590.0 180030.0 169710.0 174530.0 182060.0 152290.0 231080.0 169110.0 True False 138918.03223879577 201511.12280792042 180918.09351100892 202821.7795411084 191321.56255002168 162465.1518994282 173253.06226326077 163654.65311295076 174133.43031335992 158317.25501764473 0.8774661499993359 1.2728310807654015 1.1427566343974653 1.2811097534409852 1.2084694275977599 1.0261999039922791 1.0943409942520252 1.0337133062009645 1.0999017781981657 1.0 17.27245897799625 2.7353146707410168 24.950881626471 1.0549034815874307 1.1691442568274553 0.18587967844888043 0.10884558027995048 437.2071458359649 3360699.8674310003 0.033134735916375675 0.03244990372503066 543.6440894978292 -2.7353146707410168 0.11424077524002452 SLPIYSPEKVEEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPIYSPEKVEEYR 14 1 E9PDF6;O43795;O43795-2;E7EQD9;C9JUP5;C9JYW1;C9K0I9 E9PDF6 MYO1B Unconventional myosin-Ib 0 167.55 3.3108e-06 141190000.0 140390.0 167900.0 165130.0 176530.0 161790.0 181170.0 187790.0 175920.0 244260.0 193380.0 False True 139634.15583879544 173488.45000230672 188378.86866430994 198878.6798999711 182392.99749553966 168646.14432830687 178705.88027253482 189048.04370365955 184065.39591631165 181038.32283905262 0.7712961192362212 0.9582968251232756 1.0405469168634711 1.0985446439248057 1.007482806044836 0.9315494182866315 0.9871163048246343 1.044243233913119 1.0167206204177563 1.0 17.465935598914587 4.702774506206971 2.850799237314369 1.0165681245281364 0.7378817192965595 0.7628201337209038 0.04088132242932364 0.18590654062385134 2.226195831341941 0.011023659929491976 0.11509555049605247 50439.93360212655 -4.702774506206971 -0.27868640523157684 SLPLSPELESS(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPLSPELESSP 12 0 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 SLPLSPELES(0.004)S(0.996)P 236.77 1.1977e-06 0.0 53188.0 61533.0 51489.0 53719.0 60808.0 64555.0 56667.0 54685.0 61609.0 57767.0 True False 52901.641717742365 63581.08870751598 58738.20364958914 60519.819892066815 68551.53836274653 60092.4647961244 53925.80072103809 58765.87238480346 46426.28746830444 54080.2606031831 0.9782061167550778 1.1756801464779492 1.0861301886206494 1.1190741171928578 1.2675889057885137 1.1111718790901577 0.9971438768892338 1.0866418121761892 0.8584701136882437 1.0 15.722814483277794 1.7060281037582137 1.3964266255129574 0.9490901299227362 1.1260935686704008 0.37740700443646247 0.08578114363209424 0.4147365621190934 1.5526310426283036 0.06841235044022383 0.025990365129134805 50.81923272800077 -1.7060281037582137 0.17700343874766455 SLPS(ph)SPERR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPSSPERR 9 1 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 S(0.107)LPS(0.632)S(0.261)PERR 69.672 0.03343 248410000.0 19060.0 41871.0 45815.0 33069.0 36261.0 44885.0 42826.0 31445.0 43385.0 39255.0 True False 18957.383077765084 43264.650923446 52265.35376888119 37255.53200935904 40878.623414214475 41782.20559792495 40754.34276879271 33791.58557447463 32693.348079215524 36749.712292103664 0.5158511970674236 1.1772786295456847 1.422197631193737 1.013763909584785 1.1123522026320185 1.1369396654270572 1.1089703898865493 0.9195061258135444 0.8896218783797194 1.0 15.165445334903076 1.719449313897087 6.405697743517763 0.9292671523846525 1.0894164547346759 0.06871964675240927 0.21522315182543617 0.32877195842567364 34.203231449446555 0.10732629465472764 0.05538636224964003 52.41424252662763 -1.719449313897087 0.16014930235002334 SLPSSSQLKGS(ph)PQAISR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 SLPSS(0.001)S(0.001)QLKGS(0.991)PQAIS(0.007)R 70.538 0.019636 461510000.0 86754.0 93957.0 103240.0 109080.0 78769.0 137030.0 99982.0 103400.0 156300.0 146220.0 True False 86286.9261032755 97084.30194679413 117775.29462183332 122889.51681577577 88799.76524955904 127557.4386339236 95145.48869166944 111116.23305456113 117781.95931269758 136888.11441475982 0.6303463706266941 0.7092237508118244 0.8603763381894778 0.8977369389677657 0.648703253961867 0.9318372101133262 0.6950602621596961 0.8117303209969567 0.8604250253300141 1.0 17.062637661578382 -4.999999999994995 0.11498268921039557 1.686737781170626 0.6701448742420808 0.3777767916292577 0.09501391492491122 183.04793410575496 1.3830853829462046 29.53773596744547 1.0263562713212926 1.0000000000115241e-05 4.999999999994995 -1.016592906928545 SLPTTVPES(ph)PNYR ddPTM_BT-474_Trastuzumab_2h_R1 9 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR 324.7 1.6285999999999993e-51 60796600000.0 5984250.0 7625320.0 7077990.0 7096570.0 7445530.0 7216110.0 7373670.0 6492010.0 7280130.0 6839490.0 True False 5952031.462912686 7879124.166596721 8074509.46900805 7994995.034372281 8393674.112386202 6717277.300595786 7016977.411945165 6976476.751958812 5486039.510244071 6402987.892618016 0.9295709382450595 1.2305386639385243 1.2610533713982381 1.2486350385871703 1.3108995758157285 1.0490848043520609 1.0958910948488618 1.0895658197326858 0.8567936723055353 1.0 22.610313851304326 1.7825604539821054 1.1542725142667538 0.9465926315247205 1.1936398673939206 0.3877572273717126 0.11337406798239344 0.47910034947249075 1.187345761514164 0.09455284225166226 0.038091812845786326 60.61225671818307 -1.7825604539821054 0.24704723586920008 SLQALGEVIEAELR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLQALGEVIEAELR 14 0 K7ER00;Q9Y285;Q9Y285-2;K7ER16;K7EK06 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 ;;; 177.42 4.884e-06 101624000.0 97611.3 123575.0 107775.0 112116.0 124681.0 119291.0 107740.0 103721.0 138820.0 118010.0 False True 97085.77160643507 127688.1191723351 122948.78320290662 126309.87410448762 140558.3863078147 111044.69395080915 102528.20459323146 111461.18770456607 104609.67109269796 110478.50076655604 0.8787752452540956 1.1557734607762593 1.112875196077295 1.1432982275111037 1.272269132297679 1.0051249173397951 0.9280376171095609 1.0088948250672451 0.9468780836711472 1.0 16.75340612138174 2.4997171800775435 24.414699756015064 0.9731781047413025 1.1189157505820002 0.3442777522259305 0.09375428479365223 616.3434740205903 665953.491894009 0.030015928521243632 0.028087917380253267 316.0219001784515 -2.4997171800775435 0.1457376458406977 SLQDIIAILGMDELSEEDKLTVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQDIIAILGMDELSEEDKLTVSR 24 1 P06576;F8W079 P06576 ATP5B ATP synthase subunit beta, mitochondrial 0 ; 124.36 0.00011178 290290000.0 247126.0 224079.0 219084.0 223958.0 268178.0 388130.0 255378.0 238148.0 348770.0 312410.0 False True 245795.50107427983 231537.3340563839 249929.1228877346 252311.05983706904 302328.87868446007 361299.4866597442 243024.39050130147 255919.81305104104 262820.306778564 292471.72633234225 0.8404077349855583 0.7916571525046588 0.85454114153836 0.8626853029559591 1.0337029239568851 1.2353313299391935 0.8309329368307805 0.8750241134769846 0.8986178256421112 1.0 18.157937638443343 3.39338481434402 5.907612931827262 0.967413386020753 0.8303357653553115 0.3015604661717547 0.10554651727835641 0.31129840950088356 17.18469738600606 0.03282200193751149 0.04473266438672596 2473.915230704429 -3.39338481434402 -0.1370776206654415 SLQEEHVAVAQLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLQEEHVAVAQLR 13 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 156.6 4.1828e-05 3034740000.0 2228710.0 2849310.0 2723430.0 2696990.0 2677750.0 2727490.0 2846080.0 2423110.0 2898200.0 2737980.0 False True 2216710.8729929607 2944147.560905733 3106865.271522084 3038428.6574713863 3018745.5902322833 2538945.0361208497 2708404.2373185805 2603934.7725032666 2183977.4438903388 2563239.772297389 0.8648082387572193 1.1486040411533343 1.2120853090296162 1.1853860455466065 1.177707065432522 0.9905218636043697 1.0566331977952585 1.0158763923085523 0.8520379043326393 1.0 21.289537007815085 1.9915775141686596 1.1809154900816763 0.9432708080474169 1.1208837766249597 0.28500442498726997 0.10403056345559639 0.6043073766323408 1.5574522650082971 0.07978665713042171 0.036861472251492326 98.07933536107151 -1.9915775141686596 0.17761296857754283 SLQELFLAHILSPWGAEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQELFLAHILSPWGAEVK 19 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 225.29 1.7703e-19 1120300000.0 1891440.0 2232200.0 2048090.0 2087280.0 2022470.0 2484900.0 2536600.0 2195810.0 3388900.0 2432400.0 False True 1881256.6971987414 2306497.4276066064 2336443.2696825946 2351529.4339863593 2280019.5663811364 2313124.7118254127 2413894.967246991 2359672.4922972503 2553751.0039334646 2277162.1495175883 0.8261408602796605 1.0128823843726862 1.0260328936951482 1.0326578783528988 1.0012548148423042 1.0157927103765725 1.0600452707148542 1.036233846060168 1.1214620814220326 1.0 21.118805594209302 4.764560395169852 2.9772722658716697 1.0367927796755545 0.7836683695426735 0.7828580751324749 0.03305007684793776 0.19089515834640122 2.3400581194559686 0.007976503076669314 0.11856503755824689 58151.42949815089 -4.764560395169852 -0.253124410132881 SLQFELIAAHLNPSDTEEWVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLQFELIAAHLNPSDTEEWVR 21 0 A0A494C1S7;Q9Y5Q9;Q9Y5Q9-2 A0A494C1S7 GTF3C3 General transcription factor 3C polypeptide 3 0 102.48 0.00068632 0.0 70336.0 96007.0 81175.0 94090.0 108330.0 93463.0 98806.0 77358.0 90407.0 110560.0 False True 69957.31879106419 99202.53495754287 92603.73441425148 106001.78435273506 122125.18337778485 87002.1227982367 94026.37630442555 83130.84677596457 68127.40624173422 103503.9661448218 0.6758902233097093 0.9584418709012522 0.8946877869847151 1.0241325844887754 1.179908248220251 0.8405680095051056 0.9084325925526825 0.8031658097009409 0.6582105863113591 1.0 16.659326525522143 2.0120038913689813 2.096325416067148 0.8029780491879982 0.9460084320288944 0.09408697672867161 0.14389067181953505 0.6303978812616036 5.188028553556646 0.08106988427601364 0.043169099198018195 102.8025509407813 -2.0120038913689813 0.1430303828408962 SLQLPAS(ph)PAPDPSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQLPASPAPDPSPR 15 0 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 SLQLPAS(1)PAPDPSPR;SLQLPAS(1)PAPDPSPR 183.71 5.1845e-07 428410000.0 240446.0 249522.0 228588.0 211918.0 254465.0 278760.0 245755.0 215739.0 256730.0 244326.0 True False 239151.46545206208 257827.18893076555 260771.2034774859 238746.79707155784 286869.6094177791 259489.97733045704 233866.8917747316 231838.53968044443 193462.33150575092 228732.90550198776 1.045549021148528 1.1271976297635276 1.140068600559178 1.0437798468374855 1.2541685193400653 1.1344671933448682 1.0224453331779115 1.0135775575081378 0.8458001750170995 1.0 17.803304401138163 1.80805832972446 1.826879804033976 0.9327305194849641 1.1253836950796485 0.5591767064100779 0.06887739116857441 0.23878817538016603 1.5383415289988822 0.04641751778088957 0.01995994984687708 64.27740419575964 -1.80805832972446 0.19265317559468442 SLQSLEASLHAMESTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQSLEASLHAMESTR 16 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 195.27 7.9406e-11 429010000.0 100374.0 162618.0 144261.0 146772.0 151002.0 153976.0 144467.0 150968.0 173923.0 161061.0 False True 99833.59753659986 168030.64182534313 164571.6948609097 165353.3201511277 170231.20964102508 143332.00154051653 137478.57929246678 162233.99875997103 131062.00709879913 150781.9490887406 0.6621057635874186 1.1143949447586134 1.0914548847226622 1.0966386968098636 1.1289893164919753 0.9505912505227034 0.9117708062757279 1.0759510653658582 0.8692154988768876 1.0 17.202104200663374 1.2402155535802164 24.999283508965494 0.934607771117186 1.0143544362200236 0.0353173699621252 0.13670375628215953 140.2580088020728 2119007.3248146838 0.09966003844427355 0.03205191595932392 17.386635663188056 -1.2402155535802164 0.07974666510283768 SLQSVAEER ddPTM_BT-474_Trastuzumab_2h_R1 4 SLQSVAEER 9 0 P61313;A0A2R8YEM3;E7EQV9;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ;;; 236.89 7.1197e-10 2774350000.0 1934660.0 2263050.0 2089900.0 2264760.0 2145600.0 2170990.0 2208860.0 1985440.0 2407230.0 2257600.0 False True 1924244.005520931 2338374.2512073866 2384139.754263556 2551478.383788926 2418829.442032445 2020914.571260756 2102009.003135371 2133603.6146600368 1814000.421729399 2113518.0351713994 0.9104459831897678 1.1063895421255547 1.1280432504424833 1.2072186474538456 1.1444564947070754 0.9561851555701849 0.9945545617096686 1.0095033868433532 0.8582848083348811 1.0 21.011214992618513 2.732638553276923 24.6137450369834 0.9706207744265337 1.107295178456347 0.4064399850955043 0.08143841544914157 412.0108662793241 1712425.6696890634 0.026795052814455596 0.02586965509798361 540.3044609871245 -2.732638553276923 0.13667440402981323 SLQYER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLQYER 6 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 ; 104.76 0.078057 595170000.0 594920.0 815350.0 796170.0 725040.0 679940.0 681050.0 707630.0 601800.0 866600.0 688670.0 False True 591717.0168218258 842488.4318605178 908263.8155663033 816829.9896599741 766526.3286798769 633970.6165192558 673399.2334908878 646709.3718784811 653038.0418450652 644718.4909999499 0.9177912919855618 1.3067539455147772 1.408775811839363 1.2669560452548547 1.1889318196706358 0.9833293528404556 1.0444856831179985 1.0030879847659455 1.0129041604378552 1.0 19.29830983607066 2.8479220190927026 3.9114891245926677 1.0113709095852257 1.2425501096000224 0.4357382624820201 0.11852725752678264 0.21993739231849543 5.958802627589542 0.0378625160495328 0.040333292506079255 704.5665472776294 -2.8479220190927026 0.23117920001479675 SLRDDYEVSCPELDQLVEAALAVPGVYGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLRDDYEVSCPELDQLVEAALAVPGVYGSR 30 1 P51570;P51570-2;K7EII7 P51570 GALK1 Galactokinase 0 ; 179.17 7.075e-18 227500000.0 157923.0 185360.0 172084.0 189006.0 163346.0 195844.0 196544.0 167922.0 216116.0 191293.0 False True 157072.7601148946 191529.5955475139 196311.93141905827 212934.14022077818 184147.14487240475 182305.76524718737 187036.41584900726 180453.19233063853 162857.1076060331 179084.5169658231 0.877087326007478 1.0694927668373801 1.0961971182384398 1.189014794960834 1.0282694896932258 1.0179873075346821 1.0444030506819397 1.0076426225337873 0.9093868658512401 1.0 17.450281086678608 1.5293265831313447 3.2074075643739994 0.9543896033471232 1.052608763406834 0.17957974754669492 0.07607696301218214 0.34556004119942463 7.714649825309155 0.05386239659194372 0.020470382285278397 33.83191516526906 -1.5293265831313447 0.09821916005971076 SLRQS(ph)FR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLRQSFR 7 1 J3QRV5;Q6P1M3;Q6P1M3-2;A0A087WW77;Q15334 J3QRV5;A0A087WW77 LLGL2;LLGL1 Lethal(2) giant larvae protein homolog 2;Lethal(2) giant larvae protein homolog 1 1 SLRQS(1)FR;SLRQS(1)FR;S(0.001)LRQS(0.999)FR 103.26 0.005097399999999999 1373490000.0 1718640.0 1378410.0 1264150.0 1724100.0 1138280.0 1222380.0 1134350.0 1061920.0 1789740.0 1517860.0 True False 1709387.033198856 1424289.5435835598 1442131.3318112248 1942370.8832240426 1283233.210885858 1137879.7477730091 1079477.1568621874 1141165.862720498 1348682.5582873148 1420988.875294674 1.2029559575857878 1.0023227967130999 1.0148786924965663 1.3669149118575952 0.9030564793265892 0.8007661196763727 0.7596661561747509 0.8030786746897308 0.9491154939602432 1.0 20.43846382930949 3.022415763489066 24.472353021540158 0.8394448749979242 1.1280245459164828 0.5683945663775807 0.11759039958329018 127.21803981544112 138888.74436928547 0.033446770375389685 0.039973710883109234 1052.9694315442991 -3.022415763489066 0.28857967091855863 SLS(ph)DPIPQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSDPIPQR 9 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.162)LS(0.838)DPIPQR;S(0.049)LS(0.951)DPIPQR 65.5 0.069632 655330000.0 562050.0 620920.0 544460.0 617330.0 584890.0 626590.0 625240.0 567040.0 714750.0 640300.0 True False 559023.9852496255 641586.946845934 621115.2354688431 695483.9147037297 659372.2745853642 583275.3081342048 594994.7525512521 609355.4041707766 538609.4396593126 599435.5058115905 0.9325840391999289 1.0703185590871427 1.036166909445746 1.160231431006238 1.0999886863435355 0.9730409735147304 0.9925917747325863 1.0165487333716667 0.8985277555924487 1.0 19.193245014646692 2.726792117967163 24.479138396476394 0.981799283848422 1.0646992096131598 0.31592512427498987 0.06110480005540121 730.579028218703 1519642.566553758 0.02009794295045302 0.0190868994680821 533.0796672586707 -2.726792117967163 0.08289992576473781 SLS(ph)DSES(ph)DDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 S(0.001)LS(0.999)DS(0.391)ES(0.609)DDSK 198.03 8.0474e-08 1131700000.0 2477900.0 1793500.0 1492100.0 1526400.0 1591100.0 2171600.0 2215500.0 2135200.0 3634900.0 2152300.0 True False 2464559.261720569 1853195.5633063533 1702174.710434303 1719642.083494682 1793717.1538114392 2021482.4033965422 2108327.8009681115 2294539.4663259075 2739127.600164581 2014938.3713232614 1.2231437431518215 0.9197281612585066 0.8447775548174415 0.8534464914504305 0.8902094373404876 1.0032477579296797 1.0463485290537788 1.1387640927295581 1.3594101135538583 1.0 20.942304282645154 1.9669171432607049 1.8097136595947791 1.1881520186099355 0.9380498830104984 0.34388003794441047 0.12976996721428644 0.36097848976783664 2.197412602388723 0.0804165111765015 0.039355869948730166 92.66530153029332 -1.9669171432607049 -0.25010213559943706 SLS(ph)DSESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 8 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 S(0.007)LS(0.992)DSESDDSK;SLS(0.779)DS(0.221)ESDDSK;SLS(0.989)DS(0.01)ESDDSK;SLS(1)DSESDDSK;SLS(0.999)DS(0.001)ESDDSK;SLS(0.993)DS(0.007)ESDDSK;S(0.027)LS(0.972)DS(0.001)ESDDSK;S(0.031)LS(0.956)DS(0.011)ES(0.001)DDSK 341.59 4.590799999999998e-58 2853802000.0 3470196.0 2735973.0 2395672.0 2293449.0 2441216.0 3015305.0 3126453.0 3134604.0 4591691.0 3047773.0 True False 3451512.8503110185 2827038.2073743977 2732961.794045689 2583799.4082473754 2752090.3873791406 2806864.062614484 2975214.5241797115 3368524.0676765894 3460130.2785571283 2853261.5178102576 1.2096728003256745 0.9908093561448286 0.9578378206786692 0.9055599678189745 0.9645419356762078 0.98373880034965 1.042741615378827 1.1805872145437868 1.2126930030628995 1.0 21.44418055359292 1.9166593977734772 4.09499950659255 1.1472957795373553 0.9943376470975634 0.27614711628849864 0.09157640820003472 0.25522434151906204 7.461491440262303 0.0434680396208758 0.02502708448119331 82.53903703914743 -1.9166593977734772 -0.15295813243979184 SLS(ph)ELESLKLPAESNEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSELESLKLPAESNEK 17 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 S(0.007)LS(0.993)ELESLKLPAESNEK;SLS(1)ELESLKLPAESNEK;SLS(1)ELESLKLPAESNEK 288.92 4.943199999999998e-38 467073000.0 1353880.0 925328.0 835479.0 762231.0 813355.0 1242341.0 1163698.0 1190897.0 1923620.0 1380550.0 True False 1346590.860510209 956126.9831074128 953107.1810863502 858729.3664466944 916930.9381172167 1156460.890826147 1107405.4819819387 1279767.7813924341 1449569.6261874053 1292442.1170516794 1.0418964553569747 0.7397832138808126 0.7374467053585189 0.6644238493292287 0.7094560955727137 0.8947873762147794 0.8568317817653246 0.9901934984228478 1.1215741169857303 1.0 20.30166823917778 1.8621894825397773 1.4279416528011255 1.062310791497354 0.7761548712758599 0.5183676108065229 0.10461119110084527 0.3159663493979741 1.2063719993681412 0.07872612413817931 0.0335267004430005 72.80974039056609 -1.8621894825397773 -0.28615592022149405 SLS(ph)ESSVIMDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 SLS(0.999)ESS(0.001)VIMDR 162.49 2.6298e-05 486560000.0 173970.0 209480.0 192910.0 218460.0 196930.0 187520.0 202190.0 207940.0 262450.0 215940.0 True False 173033.3648498839 216452.41516666583 220070.0511962214 246117.01360079157 222007.8682044415 174557.18377459917 192409.29725919288 223457.53869792513 197772.71414982417 202158.5243244649 0.8559291052805913 1.0707063473576766 1.0886013930484002 1.217445637888478 1.0981870240016116 0.8634668479001879 0.9517743459107146 1.105357983021657 0.9783050940379764 1.0 17.62512751277977 SLS(ph)FEMQQDELIEKPMSPMQYAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSFEMQQDELIEKPMSPMQYAR 23 1 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 S(0.004)LS(0.996)FEMQQDELIEKPMSPMQYAR;S(0.005)LS(0.995)FEMQQDELIEKPMSPMQYAR 210.7 3.7311e-25 598200000.0 310110.0 250207.0 225285.0 228420.0 244750.0 306630.0 272040.0 262670.0 445660.0 355460.0 True False 308440.40221646 258534.9887416745 257003.16978767654 257337.9485795696 275917.4617530953 285433.38982938026 258880.38590628043 282271.7692112335 335833.0645380475 332774.238475383 0.9268758411996992 0.7769080621329395 0.7723048844319971 0.7733109081958163 0.8291430941806702 0.8577388416155753 0.7779459945347635 0.8482380442202245 1.009191895612709 1.0 18.344184226838994 1.2928137317316206 3.9955629455155592 1.008798578721754 0.8138517227673951 0.7212725183983197 0.04608232983238086 0.10409967249540589 2.9475793102648447 0.03646748464405849 0.011469356739531086 19.62518375041741 -1.2928137317316206 -0.1949468559543588 SLS(ph)FSDEMSSCR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSFSDEMSSCR 12 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 SLS(0.999)FS(0.001)DEMSSCR;SLS(0.833)FS(0.167)DEMSSCR 271.6 1.0680999999999999e-27 321350000.0 248339.0 242172.0 208856.0 244440.0 210442.0 247460.0 242962.0 196222.0 244680.0 231145.0 True False 247001.97041705652 250232.54862393468 238261.1093911044 275386.0789370021 237240.5413125431 230353.67265818242 231208.99985502783 210865.08203512657 184381.89254402323 216393.12820680955 1.1414501581630343 1.1563793670230802 1.1010567265490767 1.2726193350918809 1.096340458121246 1.0645147309762564 1.0684673851290627 0.9744536889064251 0.8520690747989336 1.0 17.723295160018502 2.0719094609052253 1.1354748021709546 0.9273415673074207 1.1573012012244444 0.6975206060648897 0.05942854139276914 0.26645497203783763 0.6392250542562898 0.043170119342841484 0.02119965088788521 118.0074595170397 -2.0719094609052253 0.22995963391702368 SLS(ph)GSSPCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.039)LS(0.959)GS(0.002)SPCPK 84.31 0.015743 194900000.0 290010.0 295470.0 238870.0 258900.0 281690.0 307380.0 301240.0 268220.0 343470.0 288460.0 True False 288448.61838314007 305304.5403346132 272500.8197047399 291676.71345438476 317561.5517925617 286131.54409468983 286667.8703514478 288235.93839356303 258826.4207622025 270050.2358369693 1.0681294814986868 1.130547208701299 1.0090745481490713 1.080083165083668 1.1759351026239253 1.0595493212878693 1.0615353453144571 1.0673419243654079 0.9584380474989007 1.0 18.042868282644054 1.340701365276356 4.123298549818139 0.9795509666244523 1.083451470388821 0.4730202992235676 0.04321632984260284 0.18682311914710736 5.003098463675612 0.033116667003372686 0.011006695126956541 21.9129761110923 -1.340701365276356 0.10390050376436866 SLS(ph)IEIGHEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSIEIGHEVK 11 0 A0A3B3IU16;C9JTT8;Q68DU7;H7C1N3;O15155-2;O15155 A0A3B3IU16 BET1;DKFZp781C0425 BET1 homolog 1 S(0.032)LS(0.968)IEIGHEVK;S(0.013)LS(0.987)IEIGHEVK 168.89 1.1298e-05 660740000.0 1610240.0 1667320.0 1303120.0 1524250.0 1614680.0 1782780.0 1239100.0 1324570.0 2117130.0 1792450.0 True False 1601570.646754481 1722815.7382837767 1486587.9690779124 1717219.8937151262 1820299.9270418282 1659540.6148127122 1179159.9991783265 1423416.139430175 1595391.6795885565 1678054.3064063485 0.9544212250104933 1.0266746026672326 0.8858997968078444 1.0233398806935237 1.0847681866387906 0.9889671677948942 0.7026947785161772 0.8482539176449564 0.9507390037961174 1.0 20.67835797539711 2.4275978791616835 24.99938172458459 0.8542939084894312 0.9967483129519984 0.29351934669022095 0.08773817161335148 114.84554200750023 57973.30749586897 0.030150647952276094 0.025225846822870032 267.6688784223345 -2.4275978791616835 0.14245440446256719 SLS(ph)KSDSDLLTCSPTEDATMGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.09)LS(0.5)KS(0.405)DS(0.004)DLLTCSPTEDATMGSR 159.65 1.2029000000000002e-11 436850000.0 114970.0 94400.0 86637.0 88086.0 78406.0 94930.0 110840.0 101050.0 126860.0 108590.0 True False 114351.01429436782 97542.04693399495 98834.73653769653 99237.67856833895 88390.53935122846 88367.71254118338 105478.24575008138 108590.86412150285 95597.05283690855 101659.69323142365 1.1248412291984096 0.9594957827773977 0.9722116346810508 0.9761752707873012 0.8694747794488367 0.8692502380468365 1.0375621093992973 1.0681801279323233 0.9403633809841058 1.0 16.63338825686176 -2.918544858047411 11.104784383424207 0.99999491952859 0.9822648644501728 0.0 0.07680364421579662 0.0 0.0 0.0 0.017929498462489115 0.0012062994837260801 2.918544858047411 -0.017730055078417184 SLS(ph)LDPGQSLEPHPEGPQR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSLDPGQSLEPHPEGPQR 19 0 P98174 P98174 FGD1 FYVE, RhoGEF and PH domain-containing protein 1 1 S(0.049)LS(0.951)LDPGQSLEPHPEGPQR;S(0.013)LS(0.987)LDPGQSLEPHPEGPQR;S(0.009)LS(0.508)LDPGQS(0.483)LEPHPEGPQR 189.39 9.085700000000002e-15 982880000.0 1486445.0 1340218.0 1215014.0 1613550.0 1174787.0 1417588.0 1267933.0 1169414.0 1496741.0 1406260.0 True False 1478442.145279566 1384826.3459511122 1386077.4101089905 1817825.264558991 1324389.160941916 1319593.4782032117 1206598.2368155697 1256681.6108439702 1127889.235851865 1316511.2828402424 1.1229999807445432 1.0518909818710303 1.0528412693271159 1.3807897343934747 1.0059839047369787 1.0023411841608525 0.9165118845107455 0.9545543796121553 0.8567258409047251 1.0 20.32828845502863 3.0151653286909 24.999992551901677 0.9479939009759395 1.144817012240575 0.5185148495495824 0.09395539921901262 199.73138514291833 329254.1285010671 0.027438818949936394 0.03278572985144551 1035.5363031130498 -3.0151653286909 0.19682311126463548 SLS(ph)LESTDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSLESTDR 9 0 Q5VT25-2;H0Y5V1;A0A0A0MRJ1;A0A0A0MRJ0;Q5VT25;Q5VT25-4;Q5VT25-3;Q5VT25-5;Q5VT25-6;H0Y7V8 Q5VT25-2;Q5VT25-3 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 SLS(1)LESTDR;SLS(1)LESTDR 174.98 5.6918e-05 752320000.0 775020.0 871820.0 824460.0 897580.0 909080.0 842100.0 890920.0 860210.0 1005650.0 863600.0 True False 770847.3784328178 900838.0016736818 940536.801665214 1011213.5359690482 1024845.9494606892 783887.6090901766 847822.7959550916 924403.2382578729 757821.0325196056 808484.3086348419 0.9534475440029558 1.1142306561209367 1.1633334025410438 1.2507522102395812 1.2676139023541255 0.9695767756010035 1.0486570820238605 1.1433780821532142 0.9373354862003651 1.0 19.624860248043753 2.724855857064532 24.86447975443032 1.0404596215536688 1.1542471960152814 0.3031345475898206 0.09598175849167898 1128.6104005792452 2047629.678561735 0.03296818491826265 0.03122941804403898 530.7082721917521 -2.724855857064532 0.11378757446161258 SLS(ph)LGDK ddPTM_BT-474_Trastuzumab_2h_R1 6 SLSLGDK 7 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 SLS(1)LGDK;SLS(1)LGDK;SLS(1)LGDK;SLS(1)LGDK;S(0.002)LS(0.998)LGDK;SLS(1)LGDK 142.55 0.0026031999999999995 3897320000.0 11011640.0 9279190.0 8380660.0 8070460.0 8317850.0 11463020.0 10451330.0 10290520.0 14158450.0 10922130.0 True False 10952354.553748205 9588042.229761189 9560584.081997432 9092179.408517096 9377078.893740477 10670608.408446588 9945759.239942243 11058450.856601771 10669289.71101 10225070.31249407 1.0711275540438547 0.9376993934257359 0.9350140184674625 0.8892045854596533 0.9170674241997704 1.0435731082854376 0.9726837015281417 1.0815036492305965 1.0434441412078248 1.0 23.285607428076627 2.731666554263454 24.90085145216304 1.0325776964904148 0.9451253841144325 0.35643989168749357 0.052182030541380826 544.7447714572547 1967573.8004890108 0.0170786227705212 0.016424514855848157 539.0965521537486 -2.731666554263454 -0.08745231237598228 SLS(ph)LGDKEISR ddPTM_BT-474_Trastuzumab_2h_R1 7 SLSLGDKEISR 11 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 SLS(1)LGDKEISR;SLS(1)LGDKEISR;SLS(1)LGDKEISR;SLS(1)LGDKEISR;SLS(1)LGDKEISR;SLS(0.847)LGDKEIS(0.152)R;S(0.002)LS(0.998)LGDKEISR 214.45 8.2015e-12 7329350000.0 7664230.0 7299350.0 7244290.0 7548330.0 7235270.0 9264330.0 9347920.0 8266670.0 12375700.0 9336590.0 True False 7622966.637256012 7542304.452199747 8264223.06350254 8503947.804052288 8156638.747694869 8623908.672987055 8895725.397077769 8883570.892699704 9325874.560883882 8740720.832743144 0.8721210507833664 0.862892728932141 0.9454853005423053 0.9729114985798547 0.933176897394975 0.9866358665387751 1.0177336134285369 1.0163430525571113 1.0669457061194227 1.0 23.059320830622305 4.008129865053492 0.44681600888533707 1.0350914614422033 0.8011257442289319 0.8183881631682615 0.026253879909897804 1.0769135174599378 0.26892720103394663 0.020923216205404795 0.12607394731358035 10188.960182302542 -4.008129865053492 -0.23396571721327142 SLS(ph)LLDAFPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSLLDAFPR 10 0 A0A0J9YXY1;A0A087X1Q5 A0A0J9YXY1 SOCS7 1 S(0.005)LS(0.995)LLDAFPR;SLS(1)LLDAFPR 137.89 8.2952e-05 58769000.0 127244.0 112896.0 97557.0 118092.0 102667.0 101197.0 87117.0 98317.0 142664.0 128441.0 True False 126558.93244213755 116653.67511292676 111292.17761935505 133042.4350917544 115741.03389501548 94201.48958211446 82902.81789074202 105653.9137836101 107506.36879965881 120243.7854161276 1.0525195294222909 0.9701430698411851 0.9255545077378117 1.1064391779694436 0.9625531456321884 0.7834208583513187 0.68945615446021 0.878664235477731 0.8940700629775716 1.0 16.875602807259412 2.8790388379809557 5.066710000233135 0.8323661201690137 1.0074412470522867 0.4366490989596914 0.08780917027097175 0.2009260922881431 7.506556209593716 0.02706554027300996 0.02891294410992839 756.900579914845 -2.8790388379809557 0.17507512688327298 SLS(ph)LSLADSGHLPDVHGFNSYGSHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSLSLADSGHLPDVHGFNSYGSHR 25 0 Q9Y446;Q9Y446-2;E9PKC4;E9PRW6 Q9Y446 PKP3 Plakophilin-3 1 S(0.172)LS(0.818)LS(0.01)LADSGHLPDVHGFNSYGSHR;S(0.264)LS(0.735)LS(0.001)LADSGHLPDVHGFNSYGSHR;S(0.164)LS(0.827)LS(0.009)LADSGHLPDVHGFNSYGSHR 321.94 8.382599999999998e-75 1139660000.0 228390.0 213056.0 223865.0 296590.0 210898.0 228807.0 232220.0 97576.0 301128.0 244197.0 True False 227160.3736165145 220147.4401649285 255383.24613053768 334138.2635899419 237754.61020961936 212990.11064374316 220986.6314334524 104857.61660088829 226919.03930847105 228612.13839243 0.9936496601356161 0.9629735398696494 1.1171027397160909 1.461594585220004 1.0399911915503612 0.9316657992942157 0.9666443478784672 0.4586703809265467 0.9925940105548874 1.0 17.802542481373482 2.3928497652476586 1.9490162562266375 0.7654785870808127 1.1228982736490294 0.2599521680646293 0.19769219461338755 0.3592656583630314 2.787944989202766 0.0899626925896265 0.06765625785843002 247.08692535557324 -2.3928497652476586 0.35741968656821665 SLS(ph)MDSQVPVYSPSIDLK ddPTM_BT-474_Trastuzumab_2h_R1 8 SLSMDSQVPVYSPSIDLK 18 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 S(0.321)LS(0.679)MDSQVPVYSPSIDLK;S(0.053)LS(0.947)MDSQVPVYSPSIDLK;S(0.04)LS(0.96)MDSQVPVYSPSIDLK;S(0.006)LS(0.993)MDSQVPVYSPSIDLK;S(0.034)LS(0.965)MDS(0.001)QVPVYSPSIDLK;S(0.028)LS(0.972)MDSQVPVYSPSIDLK;S(0.146)LS(0.854)MDSQVPVYSPSIDLK;S(0.162)LS(0.828)MDS(0.01)QVPVYSPSIDLK 410.07 2.500499999999998e-147 2420850000.0 5665770.0 4833710.0 4300900.0 4169090.0 3600040.0 5530640.0 4878820.0 5030130.0 7222960.0 5539220.0 True False 5635266.12384622 4994597.115310599 4906429.335907042 4696896.36653357 4058483.7548911646 5148319.8745261775 4642812.837697689 5405503.843082594 5442958.29070533 5185702.237235171 1.0866929619257777 0.9631476870090285 0.9461455963817492 0.9057396957365191 0.78262953968892 0.99279126316961 0.8953103408754663 1.0423860830784248 1.0496087206131832 1.0 22.306107938416037 1.6844859173978437 7.161451005910785 1.0341985619674623 0.9350747745480762 0.2423440272972477 0.07381736201760358 0.17605978659579705 17.90230354668893 0.03781255439216559 0.01953327384053075 48.35995826592231 -1.6844859173978437 -0.0991237874193861 SLS(ph)MVDLQDAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSMVDLQDAR 11 0 Q5VWQ8;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8-5;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4 Q5VWQ8 DAB2IP Disabled homolog 2-interacting protein 1 SLS(1)MVDLQDAR;S(0.001)LS(0.999)MVDLQDAR;S(0.001)LS(0.999)MVDLQDAR 210.91 1.1702e-08 447730000.0 864520.0 785770.0 763890.0 867740.0 635440.0 788460.0 766140.0 690320.0 1032350.0 832430.0 True False 859865.5203772009 811923.8794420044 871439.0721490915 977595.7950286133 716359.5174520399 733955.6160351987 729078.8812609833 741835.1837739326 777941.1752812753 779303.6047208215 1.1033768035568627 1.0418582366661435 1.1182279497619887 1.2544479315976322 0.919230339899004 0.9418095997363334 0.9355517886025553 0.9519206369380113 0.9982517347137971 1.0 19.5718259640758 3.2155396851621934 24.9999955261492 0.952965017849569 1.122415689066427 0.700277904371801 0.05489266944398005 130.48839234577977 141705.8367443067 0.016285933444513 0.01947746403577992 1642.6297537988323 -3.2155396851621934 0.16945067121685797 SLS(ph)NPDIASETLTLLSFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSNPDIASETLTLLSFLR 19 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.085)LS(0.915)NPDIASETLTLLSFLR 168.27 1.7184e-11 2270600000.0 301100.0 295190.0 262920.0 276890.0 299190.0 337260.0 307050.0 268190.0 317160.0 311130.0 True False 299478.91105535487 305015.22070387675 299936.8506583922 311944.24560982856 337290.07306193496 313946.01002464443 292196.81845509243 288203.69964122574 239000.16772626468 291273.417028206 1.0281711050423605 1.0471783653169422 1.0297433034520527 1.0709670961137552 1.1579844000294501 1.0778395544219639 1.003170222110578 0.9894610451640254 0.8205354617140385 1.0 18.152014514838598 1.6985326205593938 2.079195243337582 0.9137700002478604 1.0674300052059462 0.5315051437354825 0.05611890748227785 0.21720185906663805 1.9731898425037617 0.03935575482008571 0.0158785436503919 49.9496696802242 -1.6985326205593938 0.15366000495808585 SLS(ph)PFRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSPFRR 7 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;H0YMW2;A0A087WY36;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 SLS(1)PFRR 137.13 0.0017840999999999996 152890000.0 46268.0 61681.0 55683.0 48056.0 58803.0 59760.0 65691.0 54612.0 54996.0 61067.0 True False 46018.89822885809 63734.014798048134 63522.68239468762 54139.88467270734 66291.21349731267 55628.93185990852 62513.27536601039 58687.424754116924 41442.97270864437 57169.651777910956 0.8049532714949776 1.1148225118746218 1.1111259281665125 0.9470039258420978 1.1595525149398596 0.9730500384366915 1.093469584332226 1.0265485782929398 0.724912106682745 1.0 15.802961882348473 1.3541408008565985 10.080312607954134 0.8631095045592427 1.0374179854336119 0.24673333749151716 0.11562574498067746 0.35153477028665486 29.02486357712984 0.07032150623028185 0.025719098216614892 22.60168411506115 -1.3541408008565985 0.17430848087436912 SLS(ph)PGGAALGYR ddPTM_BT-474_Trastuzumab_2h_R1 8 SLSPGGAALGYR 12 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 S(0.01)LS(0.99)PGGAALGYR;SLS(1)PGGAALGYR;S(0.003)LS(0.997)PGGAALGYR;SLS(1)PGGAALGYR;SLS(1)PGGAALGYR;SLS(1)PGGAALGYR;S(0.004)LS(0.996)PGGAALGYR;SLS(1)PGGAALGYR 254.82 4.2293e-21 43246830000.0 12211890.0 14313120.0 13742440.0 13629640.0 13009050.0 13311490.0 13800240.0 12135530.0 15500760.0 13763820.0 True False 12146142.541108524 14789523.54673626 15677256.100570224 15355151.02652154 14665675.406819614 12391298.028176932 13132669.669163678 13041144.871572716 11680805.397542479 12885401.223800842 0.9426281983888232 1.1477736152614544 1.216668059323795 1.1916703841676874 1.138162107030893 0.9616540310199078 1.019189813422814 1.0120868295109196 0.9065146823652387 1.0 23.61923412454261 2.7443086119891915 24.040536496019932 0.9865187675977862 1.1370455208388395 0.4887927948469595 0.07493986713828467 243.89675428025112 1020078.2779269323 0.023774685555810676 0.024572983161663817 555.019973030638 -2.7443086119891915 0.15052675324105325 SLS(ph)PGVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 S(0.001)LS(0.999)PGVSR;S(0.002)LS(0.998)PGVSR 147.78 0.00055787 1479940000.0 1878920.0 2086380.0 1921270.0 1936720.0 1983940.0 2063750.0 2048240.0 1802690.0 2127370.0 1907390.0 True False 1868804.1034876353 2155823.8970566588 2191768.1160217933 2181908.5534236236 2236582.999266337 1921087.8200449517 1949158.8061633557 1937215.8816743414 1603108.1687975256 1785658.7372012644 1.046562853558843 1.2072989380017647 1.2274283267905046 1.2219067999764712 1.252525442107614 1.075842645642331 1.0915628868808112 1.084874641114583 0.8977685015615818 1.0 20.768024958187276 1.829818160929021 1.0662153146513018 0.9630748160031732 1.1896819762983577 0.6006092948834637 0.06905428258601401 0.34321331914114767 0.7203646943924401 0.058011266327315486 0.02434509092603664 67.57999587483579 -1.829818160929021 0.22660716029518446 SLS(ph)PIIGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSPIIGK 8 0 Q9H4G0-2;A0A1B0GTW6;Q9H4G0-3;A0A0C4DH22;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-2 EPB41L1 Band 4.1-like protein 1 1 S(0.003)LS(0.997)PIIGK;SLS(1)PIIGK;SLS(1)PIIGK 126.39 0.0012811 684490000.0 1915680.0 1833650.0 1753310.0 1624250.0 1570540.0 2250200.0 2078180.0 1878370.0 2654790.0 2086990.0 True False 1905366.1917320553 1894681.9317851665 2000160.8079562827 1829879.8834618947 1770538.9596801067 2094648.9704010412 1977650.4939814534 2018543.5075695938 2000552.5768634456 1953796.5114379667 0.975212198700126 0.9697437377399692 1.0237303609904558 0.93657649235699 0.9062043817331903 1.072091672873041 1.012209041424652 1.033139068348512 1.0239308777304894 1.0 20.89784878728216 2.7299947172010457 24.986935205486667 1.029181843307432 0.9646917828583325 0.4998526001030482 0.03295018435641888 567.7153380188126 1656036.6717277397 0.010830611383708966 0.010360453356323662 537.0252639046663 -2.7299947172010457 -0.06449006044909955 SLS(ph)PILPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 S(0.009)LS(0.991)PILPGR;S(0.303)LS(0.697)PILPGR 132.57 0.00031619 810180000.0 937160.0 986130.0 885990.0 913770.0 902480.0 991500.0 997790.0 899390.0 1242830.0 1017070.0 True False 932114.4346882643 1018952.7409218267 1010729.6908368677 1029453.188309051 1017405.4785819555 922959.9387399487 949523.0857720461 966507.0488098807 936551.1995687789 952159.7218425655 0.978947558172792 1.0701489650812022 1.061512756369237 1.0811769965619966 1.06852396214905 0.9693331040656592 0.9972308888834144 1.0150681935374783 0.9836072437053083 1.0 19.860844075892466 2.746599869735556 24.95297423649701 0.9960686167363442 1.0552094145519924 0.5129028592434673 0.028597641318537873 501.04577031807946 1555191.0854159633 0.008837354974945219 0.009222065114346983 557.9558941260889 -2.746599869735556 0.05914079781564818 SLS(ph)PNHNTLQTLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 S(0.001)LS(0.972)PNHNT(0.027)LQTLK;S(0.019)LS(0.981)PNHNTLQTLK;S(0.039)LS(0.961)PNHNTLQTLK 241.32 4.4874999999999996e-17 1228940000.0 2045580.0 2189070.0 2355560.0 2042420.0 1987100.0 2675880.0 2507210.0 2174980.0 3245290.0 2653120.0 True False 2034566.8245653023 2261931.87162924 2687202.373105443 2300990.1625859584 2240145.4065355505 2490902.713943976 2385926.6738276915 2337288.0519246543 2445531.764158055 2483795.610149688 0.8191361705654546 0.9106755251463395 1.0818935189854437 0.9264007687199701 0.9019040847731211 1.0028613883385757 0.9605970250039622 0.9410146480546343 0.9845946076097112 1.0 21.244115029373898 4.561682672720262 4.399572045743543 0.9688929044516887 0.8284111003784183 0.49998070503278036 0.0477174757043412 0.1844504238444644 6.081453809415186 0.011349014654679617 0.05222599188462455 36448.75283859072 -4.561682672720262 -0.1404818040732705 SLS(ph)PQLLQQMPSKPEGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSPQLLQQMPSKPEGAAK 19 1 Q9UPX8;Q9UPX8-3;A0A2R8Y2H5;A0A087X158 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 S(0.404)LS(0.596)PQLLQQMPSKPEGAAK;S(0.428)LS(0.572)PQLLQQMPSKPEGAAK 200.74 3.8295e-16 6099600000.0 4645600.0 3579300.0 3251900.0 3168000.0 3118800.0 4625900.0 4733000.0 4396100.0 5938900.0 5004800.0 True False 4620588.605774677 3698434.8367674584 3709739.253978494 3569068.475177644 3515960.693424121 4306122.421197305 4504046.708184184 4724159.304943481 4475337.672182854 4685389.379175152 0.986169607655558 0.7893548513183671 0.7917675466775361 0.7617442620758165 0.7504094983121968 0.9190532680883365 0.9612961364967936 1.0082746432859238 0.9551687832123621 1.0 22.1597375173286 2.4991510722545343 3.443369743258514 0.9826422719350058 0.810417933462677 0.6014724380267777 0.06349783095789897 0.16094119757331998 3.9991964413165437 0.0227880445814813 0.020029728264286024 315.6102303845156 -2.4991510722545343 -0.17222433847232876 SLS(ph)PSHLTEDR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLSPSHLTEDR 11 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.005)LS(0.995)PS(0.001)HLTEDR;S(0.005)LS(0.995)PSHLTEDR;S(0.118)LS(0.881)PS(0.001)HLTEDR;S(0.008)LS(0.815)PS(0.151)HLT(0.026)EDR;S(0.153)LS(0.842)PS(0.005)HLTEDR;SLS(0.786)PS(0.128)HLT(0.087)EDR 252.22 2.3321e-20 5943870000.0 2376596.0 3022180.0 2979910.0 3236420.0 3052580.0 2936190.0 3034310.0 2728303.0 2921150.0 2877180.0 True False 2363800.6712006372 3122771.4343536072 3399455.42615796 3646150.4401623826 3441307.968940816 2733218.0963478032 2887528.8331101495 2931902.8239019187 2201271.7239045827 2693555.9091222724 0.8775762415753643 1.1593490314337673 1.2620697475203748 1.3536568622221488 1.277607773904425 1.0147248427594195 1.0720136988175921 1.088487829033894 0.8172363218634261 1.0 21.361080580287826 2.7215176336438125 23.209058630295957 1.0170348572670258 1.1981030276488167 0.31354298881650944 0.13681820907681302 436.3364923312309 594199.4003105426 0.04637653279198754 0.043855457858184184 526.6445977921605 -2.7215176336438125 0.1810681703817909 SLS(ph)PSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSPSVR 7 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.005)LS(0.994)PS(0.001)VR;S(0.002)LS(0.987)PS(0.011)VR;S(0.008)LS(0.641)PS(0.35)VR 122.52 0.004545399999999999 1911600000.0 1629280.0 2027360.0 1733790.0 1890340.0 1774390.0 1935260.0 1960540.0 1888190.0 2641640.0 2034090.0 True False 1620508.1375100242 2094839.452034999 1977892.561627165 2129656.8501790753 2000348.0488664967 1801480.0313120265 1865701.1902098903 2029096.325834543 1990643.2181624728 1904272.6347279383 0.8509853620521858 1.100073284587365 1.0386603921920794 1.1183571151214582 1.050452552006706 0.9460200175430249 0.9797447887373759 1.0655492752614375 1.0453562068053739 1.0 20.860808613417607 4.750625678851464 24.370583469423742 1.0388123915751686 0.8509851985634913 0.5621497909543417 0.04957748688414174 1060.6965081642045 2142476.5320297964 0.012440736318385902 0.20860292707135353 56315.20622795203 -4.750625678851464 -0.18782719301167727 SLS(ph)PVAAPPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSPVAAPPLR 11 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 SLS(1)PVAAPPLR;SLS(1)PVAAPPLR;SLS(1)PVAAPPLR;SLS(1)PVAAPPLR 153.25 3.4158e-05 748420000.0 1281630.0 1475880.0 1158220.0 1138560.0 1184900.0 1380520.0 1266710.0 1335120.0 1397720.0 1275020.0 True False 1274729.846482478 1525003.7736116983 1321287.30857129 1282701.5792608142 1335789.9915474674 1285087.9017945256 1205434.3979978834 1434753.4340019878 1053270.6344884427 1193647.1320004577 1.0679285463084323 1.2776001656837337 1.1069329227616185 1.07460701313889 1.1190828141217828 1.0766061990538363 1.0098750004766242 1.2019912715724077 0.8823969883991132 1.0 20.186944976987782 2.417416619330549 0.27777636347150597 0.9796374060178922 1.19378646431732 0.2585004490807964 0.08894928495276923 3.5223757506959457 0.6883492086068089 0.1462871518514693 0.2656909968475443 261.4668406917481 -2.417416619330549 0.21414905829942776 SLS(ph)PVAAPPLREPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 S(0.013)LS(0.987)PVAAPPLREPR;S(0.009)LS(0.991)PVAAPPLREPR;S(0.035)LS(0.965)PVAAPPLREPR;S(0.046)LS(0.954)PVAAPPLREPR 131.82 3.2691e-05 9930200000.0 6865700.0 8908500.0 7928500.0 8368600.0 7840600.0 8275600.0 8523400.0 7791100.0 9609900.0 8297700.0 True False 6828735.834050972 9205014.037198039 9044763.8842426 9428063.901948111 8839053.93512286 7703527.250666981 8111090.579450045 8372511.444404169 7241668.91106266 7768133.681981621 0.8790703293238109 1.1849711158484948 1.164341945507729 1.2136845589844494 1.137860687905676 0.9916831463052063 1.0441492012764817 1.0778021835314726 0.9322276376190449 1.0 22.88913659766527 2.7455197261986592 24.50927892897816 1.022128653408541 1.1279324238289894 0.23654278490292902 0.09329879693570897 629.9022587490165 2218451.571424124 0.028664537972345392 0.02976979931547276 556.5699137858784 -2.7455197261986592 0.10580377042044842 SLS(ph)RS(ph)PLPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSRSPLPSR 10 1 Q9NYV4;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 S(0.437)LS(0.564)RS(0.998)PLPS(0.001)R;S(0.127)LS(0.873)RS(1)PLPSR 101.3 0.0019478 1586940000.0 1013090.0 1275330.0 1008140.0 1088270.0 1194470.0 1250690.0 1184160.0 1123220.0 1347370.0 1097660.0 True False 1007635.6360048812 1317778.5880967346 1150077.349090035 1226044.8704171623 1346578.6743216324 1164232.74410758 1126877.656869509 1207040.3799955917 1015328.7173330099 1027606.3990459952 0.9805657467103608 1.2823767829006594 1.1191807973925998 1.1931074695091355 1.3104031617278398 1.1329559111235834 1.09660435933026 1.1746135301572456 0.9880521552567368 1.0 19.970856348563416 1.2380418321153701 24.998353239538638 0.9940259869515858 1.166071079863616 0.36417252170046444 0.08818574375671745 13.46895145270908 648718.9766802785 0.06574425165132235 0.020240220587346383 17.299829866203662 -1.2380418321153701 0.17204509291203018 SLS(ph)SPGGPSKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSPGGPSKPK 12 1 Q9BZE9;Q9BZE9-2;J3KRY8;Q9BZE9-3;J3QL04;J3QR12;Q9BZE9-4 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 1 S(0.003)LS(0.554)S(0.444)PGGPSKPK 79.652 0.013601 490670000.0 487020.0 455170.0 385800.0 379480.0 377180.0 508390.0 459440.0 420160.0 646830.0 512450.0 True False 484397.9384330094 470320.05829392513 440117.2865662852 427522.1290910387 425211.6372789889 473246.19592133316 437215.13196876063 451514.4727292492 487427.4135779408 479745.0022694818 1.0096987694327537 0.9803542633462131 0.917398377230125 0.8911445185850868 0.8863284354552579 0.9864536236596414 0.9113490081198776 0.9411551357352652 1.0160135306717455 1.0 18.871908251699384 1.244787344199603 22.636325776102275 1.008006799139727 0.9378775285543592 0.3194340174496164 0.03927544003837865 48.57371611956081 176601.71049611055 0.029163242686559034 0.00999048023066924 17.570630431741563 -1.244787344199603 -0.07012927058536778 SLS(ph)SPTVTLSAPLEGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 SLS(0.902)S(0.098)PTVTLSAPLEGAK;S(0.004)LS(0.961)S(0.034)PTVTLSAPLEGAK;S(0.003)LS(0.945)S(0.053)PTVTLSAPLEGAK;SLS(0.948)S(0.052)PTVTLSAPLEGAK 421.18 2.100299999999999e-160 7342308000.0 9280890.0 7119595.0 6708662.0 7039981.0 6589166.0 8269484.0 8564328.0 8193428.0 12049790.0 8796083.0 True False 9230922.719443806 7356566.415688943 7653183.296864578 7931241.872774481 7428257.233053297 7697834.035351478 8150038.735729908 8804863.202744348 9080280.71341364 8234709.452234461 1.1209773426722451 0.8933607747013786 0.9293810961099437 0.9631477490225675 0.9020667063168408 0.9348033564514769 0.9897178258691838 1.0692378709676487 1.1026838003312596 1.0 22.973286317124586 1.8874565590913135 3.3200881752879017 1.0640815110357404 0.9512692882545122 0.32109436711708406 0.06421704603572852 0.255569319862161 4.844518546511067 0.031544649063641156 0.017057534714820223 77.17143199276927 -1.8874565590913135 -0.11281222278122827 SLS(ph)SSLDDTEVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSSSLDDTEVKK 13 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 1 S(0.009)LS(0.965)S(0.025)S(0.001)LDDTEVKK;SLS(0.983)S(0.017)S(0.001)LDDTEVKK 168.1 1.8852e-05 1065530000.0 710310.0 692850.0 667640.0 521310.0 698110.0 1121800.0 664750.0 631000.0 1294210.0 813470.0 True False 706485.7698828602 715911.0934133299 761637.9087690902 587307.7925488817 787010.170477848 1044252.6064331551 632593.5029083949 678088.4241530764 975269.2870255057 761553.648153295 0.9276900867010881 0.9400665273541207 1.0001106430466185 0.7711968736188906 1.0334270899841174 1.3712134515610053 0.830661772079199 0.8904013864254804 1.280631101158078 1.0 19.53858614634107 3.034242413937022 24.970752809107488 1.049768068441491 0.9163744950028221 0.1817553542023409 0.16164302723517932 391.43907429766 285448.40900588344 0.0489203093982645 0.05847065313341672 1082.0377532131856 -3.034242413937022 -0.13339357343866887 SLS(ph)TEVEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSTEVEPK 9 0 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 SLS(0.912)T(0.088)EVEPK 166.14 6.3952e-05 192560000.0 531490.0 490580.0 359870.0 406330.0 439390.0 493370.0 423640.0 395710.0 566150.0 485880.0 True False 528628.5168940903 506908.6587381273 410536.56795388635 457771.3363380466 495343.71203143056 459264.49316805706 403146.9147380408 425239.88957466494 426629.9185213295 454870.72241720377 1.1621511142439203 1.114401595346457 0.9025346053759545 1.0063767874648621 1.0889769062276673 1.0096593835002274 0.8862889934874237 0.9348587821060911 0.9379146590358656 1.0 18.7950970535315 7.9999999998868425 0.5276850098568088 0.9547204940662046 9.402374671308651 0.4901301251918788 0.06297147959350592 104.04855240345573 1.0191096717328785 0.033116058655229895 987.0502545619071 99999999.97394453 -7.9999999998868425 8.447654177242446 SLS(ph)TSGESLYHVLGLDK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 S(0.049)LS(0.423)T(0.423)S(0.071)GES(0.033)LYHVLGLDK;S(0.081)LS(0.83)T(0.081)S(0.008)GES(0.001)LYHVLGLDK;S(0.008)LS(0.877)T(0.102)S(0.012)GES(0.001)LYHVLGLDK;SLS(0.521)T(0.012)S(0.407)GES(0.061)LYHVLGLDK;S(0.02)LS(0.957)T(0.02)S(0.002)GESLYHVLGLDK 365.74 1.3353999999999993e-104 5694930000.0 4999150.0 6131330.0 6633900.0 5410400.0 6375000.0 8280890.0 6666440.0 6017210.0 8071980.0 6712870.0 True False 4972235.131857776 6335407.61258275 7567895.457107532 6095356.085259187 7186818.462414645 7708451.565418304 6343958.828926123 6466244.764973271 6082748.68799046 6284448.889422851 0.7911966855560527 1.0081087019811181 1.204225794539408 0.9699109965741117 1.143587701780906 1.2265914960963633 1.0094693966886152 1.0289278946728957 0.9679048704219926 1.0 22.583354803332277 4.691461833981036 3.7465237731312437 1.0708838588326244 0.774196453604192 0.4634868918807522 0.08909418854598793 0.19730070656769294 5.046423059317572 0.02157407976902839 0.14719997641936305 49143.01911675348 -4.691461833981036 -0.2966874052284324 SLS(ph)VEHLETK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSVEHLETK 10 0 J3KN34;P26045-2;P26045 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 S(0.024)LS(0.976)VEHLETK;S(0.272)LS(0.728)VEHLETK 158.01 5.2519000000000005e-06 369270000.0 1137100.0 1024110.0 846700.0 863120.0 842760.0 1151960.0 1069130.0 1041850.0 1463660.0 1149680.0 True False 1130977.9799436866 1058196.882262433 965908.0003516683 972390.9035023134 950080.4905701275 1072327.71662216 1017412.0974267805 1119598.1374071029 1102960.6050391742 1076306.4381094326 1.0507955168699783 0.9831743496036225 0.8974284331591635 0.9034517206924357 0.8827230395824585 0.9963033562316497 0.9452810662490304 1.0402224661721002 1.0247644778345473 1.0 20.037657459300092 1.7559897427830542 8.731408576511699 1.023660445046918 0.9476792586327736 0.30150293724600596 0.04879657876206068 0.16948587819652847 48.544848361139906 0.024684632912793866 0.013403303053413093 57.01508062345119 -1.7559897427830542 -0.07598118641414442 SLS(ph)VPDSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSVPDSGR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 S(0.002)LS(0.998)VPDSGR 118.6 0.0017617000000000004 0.0 378780.0 283560.0 281750.0 316890.0 289300.0 319480.0 311480.0 303190.0 438090.0 374550.0 True False 376740.6905664138 292998.1231843599 321417.9509850985 357008.2415085363 326140.64018455794 297395.09957502637 296412.5224308496 325815.57736762456 330128.5896052444 350645.89833161165 1.0744192142527897 0.8355954670465494 0.9166454035664441 1.018144638814248 0.9301139461101618 0.848135115767916 0.8453329237307301 0.9291869059865498 0.9414870990250007 1.0 18.419655326670615 4.758047758921745 24.173412145834835 0.9146450098753877 1.0744194450886557 0.38638076415786793 0.05886379803779581 3005.8381513613876 3728587.8074565055 0.014279514725454126 0.5099458782654017 57285.90242454201 -4.758047758921745 0.15977443521326806 SLS(ph)VPVDLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSVPVDLSR 10 0 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 SLS(1)VPVDLSR;SLS(1)VPVDLSR;SLS(1)VPVDLSR;SLS(1)VPVDLSR 249.22 8.9811e-09 364700000.0 1384690.0 1165780.0 1073110.0 1158410.0 989530.0 981230.0 1003400.0 1025050.0 1270830.0 1283030.0 True False 1377234.9828935226 1204582.2825711076 1224194.5603606703 1305064.5872255466 1115540.780096181 913399.8796669682 954861.7086397657 1101544.436098432 957650.9747495562 1201145.9269427522 1.1466008850389775 1.0028608977071602 1.0191888703120222 1.0865162658023544 0.9287304357227769 0.760440392111076 0.7949589531308259 0.917077943145648 0.7972811240238246 1.0 20.195980003704623 3.066440259391507 4.360690927006881 0.848909087000449 1.0550796337600932 0.6402914327437208 0.0739393901352844 0.13100406394260444 4.953367762236573 0.021259667829524116 0.025442939198756946 1165.3067427395004 -3.066440259391507 0.2061705467596442 SLS(ph)YEEPR ddPTM_BT-474_Trastuzumab_2h_R1 6 SLSYEEPR 8 0 Q8IZD4;Q8IZD4-2;F5GZK9 Q8IZD4 DCP1B mRNA-decapping enzyme 1B 1 SLS(1)YEEPR;S(0.001)LS(0.999)YEEPR;S(0.003)LS(0.997)YEEPR;SLS(1)YEEPR;SLS(1)YEEPR;S(0.004)LS(0.996)YEEPR 137.95 0.00076162 4767840000.0 6120390.0 6933570.0 6165440.0 6729920.0 6458890.0 6642250.0 6346830.0 5772230.0 7091020.0 6507660.0 True False 6087438.500279254 7164349.686018419 7033480.361034839 7581927.181965762 7281391.3566596545 6183086.891674659 6039809.585654894 6202983.1133900285 5343533.135799901 6092335.567311968 0.9991961921698818 1.1759611083240842 1.1544801305385284 1.2445025554150533 1.195172405756421 1.014895982560385 0.9913783505395043 1.0181617615864322 0.877091072341826 1.0 22.538563977328607 2.633045727584445 4.454716217374591 0.9814268853316793 1.1598398855776473 0.6151314842221471 0.06892364132062008 0.15899019266018086 5.243835607548592 0.023176362866704162 0.021779300107738826 429.58165574691117 -2.633045727584445 0.17841300024596796 SLS(ph)YS(ph)PVER ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.001)LS(0.969)Y(0.369)S(0.662)PVER;SLS(0.984)Y(0.076)S(0.939)PVER;SLS(0.999)Y(0.012)S(0.989)PVER;SLS(0.989)Y(0.018)S(0.993)PVER 190.53 5.401600000000001e-05 7237300000.0 7635300.0 8556500.0 6703000.0 8032900.0 7834000.0 8469000.0 8477100.0 7530000.0 8992600.0 8358700.0 True False 7594192.3931615725 8841297.92998653 7646724.136479549 9049864.316368219 8831613.464244114 7883557.963881621 8067030.2873332305 8091926.836565241 6776494.22466644 7825240.609756898 0.9704739792528241 1.1298435883189026 0.9771870946620138 1.1564966200635924 1.128605994968694 1.0074524678579224 1.0308986892076977 1.0340802590115665 0.8659790238548283 1.0 22.899703681901865 1.3994062258161284 5.147964923387615 0.9335151705365874 1.0591935434693402 0.3377839558777528 0.0682567564667832 0.2159731436162569 8.89378533744968 0.04556657815966041 0.01647888857114324 25.084544878722266 -1.3994062258161284 0.12567837293275286 SLSALIGQCIHIER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSALIGQCIHIER 14 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;B4DSP0;A0A087WZG9;Q86TG7-2 A0A087WXK2;B4DSP0 PEG10 Retrotransposon-derived protein PEG10 0 ; 148.33 7.7883e-06 1254780000.0 1211810.0 1406020.0 1290540.0 1369130.0 1367570.0 1626870.0 1583040.0 1239440.0 1588770.0 1549600.0 False True 1205285.7496047476 1452818.5257429632 1472236.814425232 1542461.717619937 1541721.9332775525 1514408.306140049 1506462.3073999349 1331933.3065487943 1197238.9219272858 1450703.2013206955 0.830828627459756 1.0014581372815212 1.0148435690256508 1.0632510607377899 1.0627411119476369 1.043913258591666 1.0384359157879277 0.9181294322203363 0.8252817811647069 1.0 20.468320958624503 4.73926228173435 23.38873917208031 0.998290865861689 0.8308285121755064 0.3360705196344512 0.06979371980063538 29.97110736835581 998496.8964369706 0.018080532806453626 0.10812008374271613 54860.81836473087 -4.73926228173435 -0.16746235368618267 SLSDS(ph)ESDDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 S(0.002)LS(0.009)DS(0.989)ESDDSK 221.56 8.7289e-12 107720000.0 241320.0 181820.0 171910.0 186220.0 183820.0 217840.0 231880.0 229840.0 330150.0 236580.0 True False 240020.7599331727 187871.76878748892 196113.4337314936 209795.43290643345 207228.38741349947 202781.23354020226 220663.0785323787 246991.8279038717 248788.95628334707 221481.26185367187 1.0837068469103697 0.8482513022325652 0.8854628698163266 0.9472378437370517 0.9356474930615621 0.9155683503111683 0.9963058575951508 1.115181599728532 1.1232957325650277 1.0 17.75682512096286 1.9599613675936718 3.5753265741100226 1.0889524494637801 0.9307725066048544 0.4872307026368793 0.0654180619397747 0.17534536546531354 4.386243415107513 0.02991012350836609 0.017481636921342483 91.19297155844521 -1.9599613675936718 -0.15817994285892567 SLSEEIKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSEEIKR 8 1 P15924 P15924 DSP Desmoplakin 0 ; 118.26 0.0030786 618600000.0 749000.0 658140.0 711680.0 622320.0 600420.0 891860.0 797590.0 675590.0 973860.0 818070.0 False True 744967.4672217226 680045.7920459688 811878.3579665481 701105.648192093 676879.9280318433 830207.8174126174 759007.524610316 726005.9563765082 733865.2520554296 765860.0722150367 0.972720075440298 0.8879504451500206 1.0600870673652123 0.9154487531440834 0.8838167082847873 1.0840202375500172 0.9910524809252667 0.9479616221233971 0.9582236738532784 1.0 19.546721300579062 2.773921266554756 24.99630662076687 0.9889032737282474 0.9457531014269162 0.16255604049750672 0.05804097949925832 1395.7097204747095 986619.01895244 0.017961160717170688 0.019050298184962317 594.1844288838257 -2.773921266554756 -0.043150172301331224 SLSEGHPTAQHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSEGHPTAQHEK 13 0 P49748;P49748-3;P49748-2;G3V1M7;J3QRJ8 P49748 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial 0 119.69 0.00019018 150470000.0 114270.0 160810.0 175850.0 157960.0 192180.0 302100.0 172510.0 105280.0 197380.0 197290.0 False True 113654.78301659055 166162.46363830206 200608.1514843997 177957.71980399612 216652.98385989742 281216.5380669074 164165.03224780355 113136.52820100765 148738.3437564955 184698.78329153312 0.6153520937774399 0.8996402719991237 1.0861368326815388 0.9635023936411279 1.1730070983625647 1.5225684384884564 0.8888257373557323 0.6125461477590254 0.8053022391691841 1.0 17.494814836994017 -2.742064769433386 2.1670461160625822 3.016689955058933 0.9502806485946954 0.0031645726205947744 0.2548242005383911 29610405.9097831 2949599.339257433 292347654.251903 0.07291190452326063 0.0018110699746962887 2.742064769433386 -2.0664093064642373 SLSFPILNPALSQPSQPS(ph)SPLPGSHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSFPILNPALSQPSQPSSPLPGSHGR 27 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 SLSFPILNPALSQPSQPS(0.483)S(0.483)PLPGS(0.034)HGR 201.63 2.8734e-25 405750000.0 389320.0 446880.0 413700.0 404770.0 396940.0 496750.0 450650.0 376610.0 546510.0 446540.0 True False 387223.9443775186 461754.13065533544 471945.3640551381 456013.8404979966 447487.95615229284 462410.8417237208 428850.3378498212 404714.55058683094 411829.9333588127 418041.4348978724 0.9262812536085508 1.104565461957478 1.1289439865462965 1.090834071530256 1.0704392406977894 1.106136385348232 1.025856056480596 0.9681206617370424 0.9851414213507875 1.0 18.673286419037435 2.0098842666578207 4.566240546259961 0.9835925692547669 1.0760132069586938 0.3524440122036725 0.05268753708075305 0.19996202792707315 10.643390865731677 0.022003067776047644 0.014557914700150654 102.3020335490217 -2.0098842666578207 0.09242063770392694 SLSFPILNPALSQPSQPSS(ph)PLPGSHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSFPILNPALSQPSQPSSPLPGSHGR 27 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 SLSFPILNPALSQPS(0.002)QPS(0.211)S(0.726)PLPGS(0.062)HGR 127.2 4.1686e-05 609140000.0 168930.0 187570.0 179360.0 180030.0 162280.0 209920.0 179220.0 175210.0 236130.0 196220.0 True False 168020.4996498875 193813.15406154055 204612.3289749326 202821.7795411084 182945.396091082 195408.7244985276 170550.4439131142 188285.05989835245 177938.92547989308 183697.0716076063 0.9146607410748202 1.055069372447826 1.1138573260002924 1.1041100316196342 0.9959080702269987 1.0637552509053516 0.9284331123003718 1.0249758379412084 0.9686541212806421 1.0 17.486969102460062 2.2649917869763456 24.99598107540644 0.9852031922695892 1.0459557904003813 0.20505279496045314 0.0578213730087325 358.16788297333244 338718.6263066888 0.0203222941173999 0.016998002476059607 184.07371906167145 -2.2649917869763456 0.060752598130792146 SLSGS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSGSPLK 8 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 SLS(0.007)GS(0.993)PLK;SLS(0.005)GS(0.995)PLK;SLS(0.03)GS(0.97)PLK 95.573 0.009598700000000002 947920000.0 1603620.0 1798030.0 1683000.0 1373650.0 1223110.0 2232330.0 2235490.0 2088720.0 3641340.0 2360850.0 True False 1594986.2880989294 1857876.3416179107 1919951.7711017595 1547553.9491564934 1378865.8085590529 2078014.2814395828 2127350.8082988937 2244590.8927052524 2743980.548456164 2210178.5317746275 0.7216549546421758 0.8406001211703737 0.868686281899664 0.7001940915216065 0.6238707818105149 0.9402020024921129 0.9625244195050485 1.015569946244566 1.2415198632179858 1.0 21.075731480344892 2.184083944537535 1.5419019474034246 1.0903147001544597 0.7633620929511413 0.6930448274317429 0.09552536879350283 0.23636498809913434 1.0927896266697033 0.05764721866837819 0.03286501318705353 152.7861349164593 -2.184083944537535 -0.3269526072033184 SLSGS(ph)SPCPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SLS(0.311)GS(0.689)S(0.001)PCPK 184.9 1.5819e-06 724600000.0 516950.0 478910.0 469960.0 431930.0 469690.0 543640.0 523700.0 501660.0 632920.0 534870.0 True False 514166.79863854387 494850.2298427914 536126.2830344526 486612.29371321946 529502.2374292602 506059.4463909078 498366.630271721 539096.4165778644 476945.3466934908 500734.13867475465 1.0268259320192152 0.9882494354238845 1.0706805101273242 0.9717977188475503 1.0574518422703179 1.0106350003022504 0.9952719253188937 1.0766120680420144 0.9524921707071473 1.0 18.93368529218684 SLSGSS(ph)PCPK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SLSGS(0.03)S(0.97)PCPK;SLSGS(0.031)S(0.969)PCPK;SLSGS(0.012)S(0.988)PCPK;SLSGS(0.016)S(0.984)PCPK;SLSGSS(1)PCPK 211.64 2.9699e-07 6768020000.0 13432030.0 11897140.0 10747930.0 9949180.0 9819110.0 13971110.0 13754500.0 12726010.0 17760760.0 13222770.0 True False 13359713.442918828 12293129.112927012 12261145.121317718 11208745.167887602 11069515.456075322 13005320.050155407 13089142.28770746 13675689.487569384 13383858.679990964 12378881.498017043 1.0792342947187032 0.9930726871322124 0.9904889325648537 0.905473177821689 0.8942258198245563 1.0506054244269736 1.0573768146826668 1.1047597062594126 1.081184813194545 1.0 23.561377628992844 2.5464129569385454 8.516851140952108 1.070604180211001 0.9708477146759237 0.3851471966050811 0.054048845829314206 0.360396214493076 41.57002665080685 0.018516692373632442 0.0174127397266225 351.89488725601666 -2.5464129569385454 -0.09975646553507722 SLSKS(ph)DSDLLTCSPTEDATMGSR ddPTM_BT-474_Trastuzumab_2h_R1 8 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.005)LS(0.134)KS(0.827)DS(0.034)DLLTCSPTEDATMGSR;S(0.007)LS(0.075)KS(0.912)DS(0.007)DLLTCSPTEDATMGSR;S(0.011)LS(0.125)KS(0.863)DS(0.002)DLLTCSPTEDATMGSR;S(0.033)LS(0.162)KS(0.804)DSDLLTCSPTEDATMGSR;SLS(0.025)KS(0.974)DSDLLTCSPTEDATMGSR;SLS(0.051)KS(0.948)DS(0.001)DLLTCSPTEDATMGSR;SLS(0.232)KS(0.767)DS(0.001)DLLTCSPTEDATMGSR;S(0.002)LS(0.041)KS(0.954)DS(0.003)DLLTCSPTEDATMGSR 298.18 5.5719e-62 7051610000.0 3310890.0 2803300.0 2691464.0 2861580.0 2342086.0 3258770.0 3082020.0 3073990.0 4800330.0 3564080.0 True False 3293064.5361144585 2896606.145869367 3070398.7365755374 3223855.734595591 2640336.7694686847 3033498.900219449 2932930.9181402554 3303386.743204938 3617352.992626496 3336617.3630375993 0.9869470118433086 0.8681265577400059 0.9202130189061591 0.9662048067929037 0.7913214139319131 0.9091539634792896 0.8790132637415053 0.9900406261141047 1.0841377955706974 1.0 21.669954819794153 1.5690340106487222 3.90295204047411 1.0415863401158745 0.9009766456975222 0.5251287054724021 0.0543049577951482 0.13038591134381633 4.500756246553185 0.03222555044709336 0.013665466798703216 37.07097518209503 -1.5690340106487222 -0.14060969441835225 SLSNS(ph)NPDISGTPTSPDDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 SLSNS(1)NPDISGTPTSPDDEVR;SLSNS(1)NPDISGTPTSPDDEVR 405.34 1.7334999999999992e-122 0.0 281620.0 340670.0 302390.0 277330.0 280850.0 321300.0 371130.0 314940.0 372090.0 319940.0 True False 280103.7892109234 352008.99501063616 344963.88357900264 312439.9495647144 316614.5827716314 299089.2872588458 353177.02404572105 338442.42203291575 280393.4052505543 299521.1552855849 0.9351719712213731 1.175239173590278 1.1517179254002587 1.0431314918868144 1.0570691825415417 0.9985581384849851 1.1791388281371205 1.1299449673603874 0.9361389013848026 1.0 18.19229837911276 1.2364561937079634 24.99945249202626 0.9680694166147413 1.0906017725669321 0.2650215618471854 0.07637592924271615 70.37130515852304 835872.3278215657 0.06140349100404607 0.01826908146009777 17.23678218774698 -1.2364561937079634 0.12253235595219081 SLSNS(ph)PQLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSNSPQLK 9 0 A0A1W2PRG7;B7ZM68;Q6ZNL6 A0A1W2PRG7 FGD5 FYVE, RhoGEF and PH domain-containing protein 5 1 SLSNS(1)PQLK;SLSNS(1)PQLK;SLS(0.001)NS(0.999)PQLK 177.1 5.5082e-05 402010000.0 757480.0 725060.0 649400.0 673600.0 682520.0 868640.0 844760.0 679830.0 962250.0 744410.0 True False 753401.8118439391 749193.1837919741 740829.8753140118 758877.6909342358 769434.8763870184 808592.9613586172 803895.7315034164 730562.3667067923 725116.3809894007 696901.1164785355 1.0810741926356835 1.075035132068194 1.0630344216658023 1.0889316618817746 1.1040804185750173 1.1602692867597404 1.1535291198348603 1.048301329173281 1.0404867546395073 1.0 19.410594440592902 -1.6875153719344684 6.430424183291548 0.99910661444142 1.0912951354260445 0.3385945244038281 0.03794342380071096 0.0005328154255341125 2.5892010051973535e-05 0.040279343844505947 0.00940355261239315 0.020534523428408346 1.6875153719344684 0.09218852098462449 SLSQS(ph)FENLLDEPAYGLIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSQSFENLLDEPAYGLIQK 20 0 Q8TC07-2;Q8TC07-3;C9JA93 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 S(0.135)LS(0.156)QS(0.709)FENLLDEPAYGLIQK;S(0.013)LS(0.078)QS(0.909)FENLLDEPAYGLIQK 294.07 9.6542e-55 467190000.0 723840.0 602510.0 566940.0 566070.0 507080.0 612080.0 598140.0 610360.0 820770.0 717570.0 True False 719942.9258661845 622564.1811250135 646760.2240691805 637734.4039595352 571653.6323013667 569768.3502813395 569205.683083306 655908.1625452791 618502.2312545292 671774.0682574158 1.0717039550718577 0.9267463728392302 0.9627644987054632 0.9493287015585766 0.8509611479708321 0.8481547252327267 0.8473171412523074 0.9763820807294737 0.9206997716641937 1.0 19.357616580341915 7.999991257441841 0.9608250388790182 0.9099993246551376 121.66924578028365 0.42518411268511935 0.0526177745934812 1308.1713664001104 2.126230261944244 0.01657987146664413 347361.18635086546 99997986.97185248 -7.999991257441841 120.75924645562851 SLSS(ph)PGGPSKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSSPGGPSKPK 12 1 Q9BZE9;Q9BZE9-2;J3KRY8;Q9BZE9-3;J3QL04;J3QR12;Q9BZE9-4 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 1 SLS(0.121)S(0.878)PGGPSKPK;SLS(0.02)S(0.98)PGGPSKPK;SLS(0.026)S(0.974)PGGPSKPK 155.06 4.3617e-05 2221970000.0 2465860.0 2139790.0 1861970.0 1699790.0 1856160.0 2388990.0 2313390.0 2235010.0 3175090.0 2391980.0 True False 2452584.0837428016 2211011.6166196303 2124119.19146663 1914983.239716605 2092530.9736777365 2223844.744377557 2201482.487691992 2401797.795350819 2392631.613526252 2239321.788522891 1.0952352164449681 0.9873577026542779 0.9485546929223374 0.8551621520102177 0.9344485390186013 0.993088512680644 0.9831023388309643 1.0725558995856068 1.0684626147921725 1.0 21.09463042638872 1.9054656486336372 3.2668297560194715 1.0534656325010605 0.9629528773480429 0.2506077314469759 0.059379952919924595 0.32994489173228947 6.176517108702799 0.03219404948953376 0.017575529007067797 80.43881213935272 -1.9054656486336372 -0.0905127551530176 SLSS(ph)PPSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLSSPPSSK 9 0 A0A1B0GW37;O00712;O00712-4;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWJ4;Q5VW27;O00712-5;Q5VW26;A0A2R8Y7V8;Q5VW30;A0A1B0GWI9;Q5VW31;A0A1B0GVN4;A0A1B0GWB8;O00712-6 A0A1B0GW37 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 SLS(0.003)S(0.993)PPS(0.002)S(0.001)K;SLS(0.048)S(0.94)PPS(0.01)S(0.003)K;SLS(0.018)S(0.98)PPS(0.001)SK 84.31 0.016341 656030000.0 1826570.0 1805750.0 1540750.0 1543130.0 1474430.0 1892920.0 1865440.0 1738780.0 2342950.0 1931700.0 True False 1816735.9500710054 1865853.2971510729 1757674.2075609246 1738490.0997793158 1662189.920868709 1762066.895854386 1775201.5405271698 1868536.5929459352 1765561.3664215268 1808417.2521884271 1.004599988123599 1.0317603942857438 0.9719406323036917 0.9613324013999036 0.9191407120548294 0.9743696559641029 0.9816327168848551 1.0332441756374287 0.9763019924107453 1.0 20.78629615538057 1.966904400347824 20.306130936354144 1.0070166126449485 0.9762336447634229 0.12681516219686995 0.030119644073736688 126.27053545462009 77472.47554916181 0.013616021258719276 0.008803549898507644 92.6625826181492 -1.966904400347824 -0.03078296788152557 SLSS(ph)PSGLHPAEEDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSPSGLHPAEEDGR 16 0 A0A1B0GW72;Q96PX9 A0A1B0GW72 PLEKHG4B Pleckstrin homology domain-containing family G member 4B 1 SLS(0.021)S(0.979)PSGLHPAEEDGR 210.63 1.4662e-12 0.0 85300.0 83595.0 75404.0 79014.0 72594.0 100240.0 94455.0 91882.0 125220.0 90178.0 True False 84840.7542777209 86377.40904075546 86020.22777668264 89017.16429851203 81838.41560165158 93310.64473957877 89885.8507968597 98738.70140734215 94361.20886203441 84422.76283473003 1.0049511699091056 1.0231530708116239 1.018922206385023 1.0544213587605065 0.969388028224832 1.1052782638996081 1.064711077660707 1.1695743907438527 1.1177223499159858 1.0 16.3653444235186 2.7161829195986233 23.53911257650749 1.1051589588003445 1.0171669009637272 0.4007532071298271 0.04567329102214295 327.5540235032506 344553.5266277033 0.01436505565589842 0.013556045268865159 520.215058706562 -2.7161829195986233 -0.08799205783661734 SLSS(ph)PTVTLSAPLEGAK ddPTM_BT-474_Trastuzumab_2h_R1 5 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 SLS(0.306)S(0.694)PTVTLSAPLEGAK;S(0.001)LS(0.053)S(0.946)PTVTLSAPLEGAK;SLS(0.245)S(0.754)PTVTLSAPLEGAK;SLS(0.025)S(0.973)PT(0.003)VTLSAPLEGAK;SLS(0.453)S(0.547)PTVTLSAPLEGAK 449.01 1.1611999999999992e-182 14699650000.0 15764560.0 12422980.0 11208910.0 11901500.0 10990740.0 15180490.0 12995960.0 13974830.0 21196530.0 15267990.0 True False 15679685.360567283 12836471.379449999 12787027.09840775 13408228.679711714 12390345.591780255 14131098.457329683 12367295.765411632 15017702.777348869 15972929.200450255 14293573.806616107 1.0969744566827355 0.8980589146647387 0.8945997181257064 0.9380599184722724 0.8668472811218914 0.9886329793035232 0.8652346804748822 1.0506611558823435 1.1174902383794891 1.0 23.76886334120963 1.620653002571442 6.458241253764737 1.0667020031713814 0.9322762670000971 0.38307616296659797 0.06985561536387892 0.11667580753455772 10.349398350622456 0.03490229448612463 0.01695177426201051 41.74966572329069 -1.620653002571442 -0.13442573617128428 SLSS(ph)SLDDTEVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSSLDDTEVKK 13 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 1 SLS(0.028)S(0.647)S(0.324)LDDTEVKK 253.46 5.3777e-24 560250000.0 441780.0 434190.0 465910.0 349660.0 452390.0 706270.0 445000.0 438340.0 748420.0 537160.0 True False 439401.50556637265 448641.75167660235 531506.0782376827 393926.92014855286 509999.18497439317 657447.2172807491 423473.649934917 471051.15664541884 563981.9193141974 502877.9889141869 0.8737735897232796 0.8921483174185227 1.0569284994662613 0.7833449242809752 1.014160882395315 1.307369246167063 0.8421001898478007 0.9367106276862734 1.1215084607937325 1.0 18.939848882140037 3.0358655340622556 24.869703682446065 1.027476206766633 0.9103229338807088 0.20333596039658142 0.13031598377056383 324.064546978956 224709.1099284252 0.038908664973848615 0.046504634129214635 1086.0892973845719 -3.0358655340622556 -0.11715327288592414 SLSS(ph)SPQAQPPRPAELSDEEVAELFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 1 S(0.002)LS(0.072)S(0.525)S(0.401)PQAQPPRPAELSDEEVAELFQR 127.23 3.9089e-05 101900000.0 19616.0 32308.0 32368.0 39734.0 38016.0 27276.0 27738.0 21233.0 24150.0 26112.0 True False 19510.389635542484 33383.35224940156 36925.133052300516 44764.320325981214 42857.112261514514 25390.474320797617 26396.206970549956 22817.51427898932 18198.55609342064 24445.509804392066 0.7981175189906287 1.365623074197604 1.5105077925462722 1.8311878412099434 1.7531690934019497 1.038655954568629 1.0797977698876795 0.9334030855388319 0.7444539401731335 1.0 14.577281872218018 2.5913345649822124 5.964923790670893 0.9529974008243668 1.4700633948689161 0.4528688282277923 0.27162841260990694 0.229941867420653 10.547419282285452 0.09513182213871631 0.08926950989534253 390.2424998154541 -2.5913345649822124 0.5170659940445493 SLSS(ph)SPVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 SLS(0.092)S(0.697)S(0.211)PVKK;SLS(0.001)S(0.585)S(0.414)PVKK 111.86 0.00126 1911830000.0 3139100.0 2325800.0 1987440.0 1985480.0 2090610.0 3405900.0 3281700.0 3021000.0 4888700.0 3550400.0 True False 3122199.4343867986 2403212.847024211 2267254.276861844 2236841.564424151 2356836.79148371 3170458.149626216 3122951.6336885775 3246442.36032717 3683945.390223828 3323810.4323496344 0.9393434126084276 0.7230294554811167 0.6821250257822615 0.6729750718192751 0.7090767778286438 0.9538625063478688 0.9395697189267597 0.976723079249808 1.1083500293425612 1.0 21.66440667221826 2.660555199556746 4.092255885011241 0.9933968569584262 0.7362546399380613 0.7039418629248149 0.08132463783638381 0.13361753013921332 4.243050018735765 0.02795573053328219 0.026503185600343725 457.67290218283205 -2.660555199556746 -0.2571422170203649 SLSSS(ph)LDDTEVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSSLDDTEVKK 13 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 1 SLS(0.001)S(0.005)S(0.994)LDDTEVKK 172.43 1.4333e-05 930970000.0 997190.0 1102500.0 1077200.0 795160.0 1117000.0 1719600.0 1231800.0 1092100.0 1636600.0 1128400.0 True False 991821.2398382251 1139196.0460246764 1228860.396809753 895827.1744704088 1259243.3290222979 1600728.0995029898 1172213.1280670362 1173598.0475714346 1233281.859316448 1056384.5459281565 0.9388827616431997 1.0783914346491696 1.163269948946533 0.8480123814035169 1.192031191554309 1.5152892056903051 1.1096462292877551 1.1109572286863516 1.1674554158049204 1.0 20.01070367060682 3.0886495795438513 24.999965383512105 1.1929700685228344 1.0229572437278471 0.2506410549137813 0.146929192154557 31.21975253814478 8796.734136776395 0.043403561957612365 0.05187717819751883 1226.449243134522 -3.0886495795438513 -0.17001282479498725 SLSSS(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 1 SLS(0.007)S(0.041)S(0.952)PQAQPPRPAELSDEEVAELFQR;SLSS(0.003)S(0.997)PQAQPPRPAELSDEEVAELFQR;SLS(0.015)S(0.111)S(0.874)PQAQPPRPAELSDEEVAELFQR;SLS(0.005)S(0.13)S(0.865)PQAQPPRPAELSDEEVAELFQR 312.65 2.8268e-82 3744280000.0 666724.0 772905.0 785201.0 732144.0 849373.0 792376.0 815126.0 669751.0 847724.0 805084.0 True False 663134.4320639997 798630.6756940611 895750.4757105599 824833.3553315845 957535.6169218064 737600.9121724709 775695.2412962895 719731.2205466665 638813.7791196235 753702.8498529107 0.879835378350253 1.0596094679088957 1.188466351010044 1.0943747333482357 1.2704418155094872 0.9786362255581464 1.0291791273545943 0.9549270255341691 0.8475671536127155 1.0 19.52363632214799 2.0724213978140167 1.6603751709519392 0.9289244732696178 1.0968902454769147 0.28360805784948473 0.10467663847145105 0.47234401208692905 2.4660342211280875 0.06445431779274659 0.03377192267064677 118.14664616792001 -2.0724213978140167 0.16796577220729692 SLSSS(ph)PVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 SLS(0.002)S(0.195)S(0.804)PVKK;SLSS(0.037)S(0.962)PVKK 85.81299999999997 0.008919 2129430000.0 3880900.0 3249000.0 3030300.0 2765700.0 3018800.0 4513500.0 4676700.0 4109300.0 6570400.0 4888300.0 True False 3860005.665608527 3357141.0009380276 3456939.90016023 3115837.3364263903 3403226.2861705576 4201492.36863616 4450470.154271075 4415956.832602594 4951212.958849322 4576324.50891581 0.8434728914193658 0.7335889302424878 0.7553965837486519 0.6808602253524569 0.7436593011575627 0.918093190386874 0.9724988133163328 0.964957101271822 1.0819191141718942 1.0 22.125757927123214 2.5724157210315206 2.474627545697808 0.9978260769678109 0.7453028605734638 0.8614266818664698 0.048224383148706515 0.10487501310757681 1.2678831764193632 0.018210001740730307 0.016340003584065357 373.6076162409132 -2.5724157210315206 -0.25252321639434705 SLSSSPQAQPPRPAELSDEEVAELFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 0 175.11 1.2805e-12 158860000.0 22924.0 20603.0 19004.0 24388.0 26379.0 24553.0 17465.0 22135.0 28447.0 23356.0 False True 22800.57973109584 21288.758400223498 21679.59801427085 27475.518299442017 29738.209289417387 22855.708901545095 16620.15122722096 23786.82609925253 21436.618020270686 21865.40008392238 1.0427698392704507 0.9736276637296526 0.9915024619289655 1.2565751458462795 1.3600578619772834 1.0452911363991408 0.7601119194449019 1.087875182157905 0.9803899282882558 1.0 14.416362126039004 2.4763423212955327 24.999584188824898 0.9618923783710069 1.125032664468445 0.2594304002581641 0.13358240907893937 41.94699027520474 1346188.496456281 0.04993565788880231 0.042122184911574705 299.46241409328206 -2.4763423212955327 0.16314028609743803 SLST(ph)EVEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSTEVEPK 9 0 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 SLS(0.297)T(0.703)EVEPK 186.82 0.00046111 148410000.0 496820.0 448790.0 358090.0 373120.0 452070.0 522570.0 407630.0 397300.0 557720.0 489630.0 True False 494145.1763218917 463727.70385071554 408505.95942592307 420356.95374314446 509638.4348711822 486445.96589746367 387911.3796021806 426948.54344852216 420277.37906511617 458381.39420666714 1.078021888687524 1.0116634525563617 0.8911922791563893 0.9170462829772299 1.111821817622478 1.061225372681997 0.8462633617002477 0.9314264253405253 0.9168726837015306 1.0 18.80618896043709 2.2447800726496006 24.999903501422377 0.9168132246935512 1.0065744093086533 0.2581230849631214 0.07254902037785657 218.0643411053063 876539.2971315666 0.027123251514712468 0.022170512301611267 175.7033624276732 -2.2447800726496006 0.08976118461510207 SLSTSGES(ph)LYHVLGLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 S(0.001)LS(0.132)T(0.011)S(0.011)GES(0.844)LYHVLGLDK 281.49 5.8883999999999996e-36 1413000000.0 897480.0 1113600.0 1215200.0 890350.0 1126100.0 1416600.0 1186700.0 1032400.0 1433600.0 1066900.0 True False 892648.0673994016 1150665.5028145853 1386289.59729225 1003068.2187103585 1269502.160082373 1318673.7763177103 1129294.7873657665 1109442.9304209747 1080308.4892558113 998809.5285809552 0.893712005999401 1.1520369699009354 1.3879419024584214 1.0042637660209888 1.2710152674314197 1.3202454908406789 1.130640782903019 1.1107652647218937 1.0815960984980235 1.0 19.9298500589898 1.2722281038344483 1.4455718736054068 1.0105629636074662 1.1765915362167247 0.12521426782272782 0.13684832310841064 0.7534189524234417 2.965727266478615 0.12522591930558283 0.038736597606491376 18.71664933992526 -1.2722281038344483 0.16602857260925852 SLSYS(ph)PVER ddPTM_BT-474_Trastuzumab_2h_R1 6 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SLSYS(1)PVER;SLSYS(1)PVER;SLSYS(1)PVER;SLSYS(1)PVER;SLSYS(1)PVER;SLSYS(1)PVER 210.08 7.7364e-06 6249360000.0 3363190.0 4151240.0 3534240.0 3752070.0 3698360.0 3726520.0 3847340.0 3341470.0 3869400.0 3574100.0 True False 3345082.958725536 4289411.513922429 4031830.271835227 4227081.677291599 4169324.224102867 3468914.4436845114 3661229.465933941 3590827.459040851 2915838.217303597 3345997.878059039 0.9997265630861566 1.2819528494174208 1.2049709589696538 1.263324673637768 1.2460630209728127 1.0367353985582246 1.0942115325123167 1.0731708715618893 0.8714405458604263 1.0 21.674005099782725 2.0138024018549414 0.9991914130457533 0.960233895701326 1.2022897597540096 0.4978006623636101 0.09203649591509025 0.44364397239073694 0.8162728793582775 0.0722458122408815 0.034461077648565236 103.22916201006052 -2.0138024018549414 0.24205586405268364 SLT(ph)NLVAAGDDVLEDQEILMHHPPQVDELDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLTNLVAAGDDVLEDQEILMHHPPQVDELDR 31 0 Q7Z5Y7-2;Q7Z5Y7-3;Q7Z5Y7 Q7Z5Y7-2 KCTD20 BTB/POZ domain-containing protein KCTD20 1 S(0.467)LT(0.533)NLVAAGDDVLEDQEILMHHPPQVDELDR 92.238 0.0009106 8628400.0 2975.8 1983.4 1482.3 1681.9 0.0 2059.8 1765.8 0.0 2990.9 2111.2 True False 2959.7786234424602 2049.4162700093807 1690.9949556174322 1894.8283675509078 0.0 1917.4108742476499 1680.3815079889366 0.0 2253.8327710067 1976.4614085107435 1.4975139968316622 1.0369118573145368 0.8555668976565501 0.9586973767318099 0.0 0.9701231028297244 0.8501969736181685 0.0 1.1403373530601617 1.0 10.948704070685428 4.738758772275568 0.9422065094243139 0.6089500448998881 1.9621868225911092 0.27434694426299056 0.38367876480533347 2.394630838090149 1.6750646356950716 0.12113882071536784 3.3288111424148883 54797.25104889147 -4.738758772275568 1.353236777691221 SLT(ph)RS(ph)PPAIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.409)LT(0.591)RS(1)PPAIR 87.727 0.029054000000000007 508370000.0 220260.0 329220.0 264270.0 252250.0 320960.0 321520.0 324920.0 287070.0 303810.0 311370.0 True False 219074.1446331864 340177.888682307 301476.9189239822 284184.8241362249 361832.35352103575 299294.0791766701 309202.3782850633 308492.62111192325 228940.0963454299 291498.1000227313 0.7515457034406152 1.166998648209987 1.0342328780203807 0.9749114114776869 1.2412854611842057 1.026744528191885 1.0607354842482728 1.0583006238732489 0.7853913844638333 1.0 18.153126954443316 1.2641806812877214 24.963140216560312 0.8926956600282037 1.0489685190609301 0.16626728087310905 0.12993334835397302 288.96918339498296 281560.5333014742 0.0801568563735656 0.029249764577909718 18.373025647744164 -1.2641806812877214 0.15627285903272647 SLTAEIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTAEIDR 8 0 P54136;E5RH09;E5RJM9 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ; 160.63 0.00081944 284830000.0 404930.0 532540.0 435330.0 444410.0 447150.0 443040.0 463410.0 411830.0 535220.0 464780.0 False True 402749.90187195205 550265.2719727716 496620.6800438082 500672.260433616 504091.90203430696 412413.6876039802 440993.0879018873 442562.845830367 403322.20258056297 435117.3424818225 0.9256121568833524 1.264636497442663 1.1413488536475769 1.150660319760829 1.1585194447986544 0.9478217651625992 1.0135038180426243 1.0171114837806208 0.9269274358960129 1.0 18.731044993990285 2.74301370651821 24.985811888024774 0.9877293287214299 1.1377209762411389 0.4374423873485218 0.08287252787700938 341.1143804733913 1913956.4416582724 0.024274179288529783 0.02494811318264607 553.3675734556728 -2.74301370651821 0.14999164751970895 SLTDPSQESHTEAIS(ph)DAETSSSDISFSGIATR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLTDPSQESHTEAISDAETSSSDISFSGIATR 32 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 SLTDPSQES(0.001)HT(0.003)EAIS(0.996)DAETSSSDISFSGIATR;SLTDPS(0.001)QES(0.004)HT(0.001)EAIS(0.995)DAETSSSDISFSGIATR;SLTDPSQESHTEAIS(1)DAETSSSDISFSGIATR;SLTDPSQESHTEAIS(1)DAETSSSDISFSGIATR 346.33 1.0849999999999992e-131 728620000.0 214119.0 267406.0 233025.0 247935.0 235794.0 270615.0 257505.0 231076.0 305185.0 266395.0 True False 212966.20709485744 276306.4470596595 265832.89451039035 279323.5455786515 265820.968239466 251908.02200918933 245048.4993853726 248320.06450015272 229976.24601948593 249393.443027766 0.8539366733517009 1.1079138396950443 1.0659177373833124 1.1200115856596649 1.0658699162747076 1.0100827790454112 0.9825779555803731 0.9956960435102786 0.922142311471604 1.0 17.928064009228773 2.4642117612318093 2.916394267237307 0.9769820251684702 1.0516078976921186 0.1587126646738133 0.07164335521642552 0.44992720143203013 7.8525456534120215 0.026070039575299915 0.022139214101567307 291.213672472677 -2.4642117612318093 0.07462587252364838 SLTEISTDFDRSS(ph)PPLQPPPVNSLTTENR ddPTM_BT-474_Trastuzumab_2h_R1 4 SLTEISTDFDRSSPPLQPPPVNSLTTENR 29 1 J3KRR7;Q9NQC7-2;Q9NQC7 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 1 SLTEISTDFDRS(0.146)S(0.854)PPLQPPPVNSLTTENR;SLTEISTDFDRS(0.135)S(0.865)PPLQPPPVNSLTTENR;SLTEISTDFDRS(0.426)S(0.573)PPLQPPPVNSLTTENR;SLTEISTDFDRS(0.005)S(0.995)PPLQPPPVNSLTTENR 172.4 1.1029e-12 2137770000.0 397048.0 396429.0 422340.0 415102.0 448362.0 506115.0 424782.0 393165.0 447198.0 484657.0 True False 394910.3376841802 409623.8996186089 481801.8009549126 467653.8706386331 505458.24305022 471128.46131656016 404233.6718351777 422504.96875141724 336992.04504619126 453725.77532426716 0.8703722802654247 0.9028005943146172 1.0618788421499312 1.0306971657151545 1.1140170352653669 1.0383550746700596 0.8909206701917725 0.9311901411143391 0.7427218451615427 1.0 18.79146109329727 2.228797272771385 24.390992598508717 0.8905666433796979 1.0074434814185065 0.2694195814283743 0.0900223212549751 208.667850442648 521293.40666289855 0.03484443734212688 0.026068559511309104 169.35470737312912 -2.228797272771385 0.11687683803880855 SLTELQELEAVYER ddPTM_BT-474_Trastuzumab_2h_R1 1 SLTELQELEAVYER 14 0 A0A6I8PIQ6;A0A0A0MS45;J3KNI1;Q9H9E3;Q9H9E3-2;E9PRT5;H3BSD2;H3BMV9;J3QLW1 A0A6I8PIQ6 COG4 Conserved oligomeric Golgi complex subunit 4 0 150.49 1.6748e-05 35006000.0 50289.0 65351.0 58691.0 59885.0 59851.0 62339.0 67943.0 57644.0 65356.0 71380.0 False True 50018.249611633124 67526.1685294862 66954.18264868295 67466.43485985257 67472.67008533004 58029.651660221534 64656.33752253504 61945.687990300954 49249.88952553206 66824.46728850744 0.7485020328809314 1.0105006634463578 1.0019411357162862 1.0096067742459285 1.0097000817683148 0.8683892893554207 0.9675548514795975 0.9269911232192413 0.7370038479005148 1.0 16.028088811182908 1.4431124922345067 13.52924931225294 0.8563216912108498 0.9506549274984271 0.08256570983247291 0.09796585288566322 1.2543311300475322 493.74369912221806 0.05216941692812661 0.023084439209186975 27.74038551228212 -1.4431124922345067 0.09433323628757728 SLTNDWEDHLAVK ddPTM_BT-474_Trastuzumab_2h_R1 18 SLTNDWEDHLAVK 13 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 ;;;;;;;;;;;;;;;;; 242.4 6.2349e-17 183956944000.0 47414928.0 48290854.0 45087813.0 44869862.0 43888170.0 52902610.0 53979011.0 49510848.0 66051174.0 53301073.0 False True 47159651.29594169 49898185.882952265 51435785.16010388 50550381.92858946 49477068.303936034 49245577.0900488 51367840.01808323 53205598.88875194 49773747.20808642 49899352.88779553 0.9450954484717592 0.9999766128261044 1.0307906251963466 1.013046843358026 0.9915372733428217 0.9868981106986132 1.0294289814457065 1.0662582941384207 0.9974828194667865 1.0 25.572517770523135 2.1861041908242824 7.54740723038411 1.0330748822966334 0.9971770582297683 0.1683568426484634 0.027769317438462313 0.31936297533094316 38.708278064562116 0.010645094368147872 0.007885726960879599 153.4985194223611 -2.1861041908242824 -0.035897824066865036 SLTPAVPVESKPDKPSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLTPAVPVESKPDKPSGK 18 2 P20810-6;P20810-10;P20810-7;P20810-9;P20810;P20810-8;B7Z574;E7ES10;P20810-4;H0YA91;E7EQK6;P20810-5;E9PCH5;P20810-2;P20810-3;F8W7E0;E9PSG1;A0A0C4DGB5;H0Y944;E7EVY3 P20810-6;P20810-5;A0A0C4DGB5;E7EVY3 CAST Calpastatin 0 123.55 1.8969e-05 424640000.0 335440.0 278610.0 234530.0 196280.0 228570.0 356750.0 311750.0 337040.0 519720.0 314770.0 False True 333634.02831088775 287883.3654266982 267549.7854286963 221129.0278749581 257677.03465946857 332088.71219916973 296669.4614993493 362191.63625444146 391641.9698912038 294681.1091118452 1.1321866858599956 0.9769318647346106 0.9079298847322741 0.7504010981274993 0.874426716514319 1.1269426574376256 1.0067474715074096 1.2290968951015209 1.3290365679415082 1.0 18.168795052156245 2.2443329198612205 1.5642202967087864 1.1950044367292876 0.9273187304245796 0.3803223377391285 0.12942745630426225 0.3806439066788518 1.8422656498763457 0.0737424392046139 0.04482107090624311 175.52255005405615 -2.2443329198612205 -0.267685706304708 SLTSS(ph)LENIFSR ddPTM_BT-474_Trastuzumab_2h_R1 9 SLTSSLENIFSR 12 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 SLTS(0.002)S(0.998)LENIFSR;SLTS(0.039)S(0.961)LENIFSR;SLTS(0.037)S(0.963)LENIFSR;SLT(0.007)S(0.244)S(0.749)LENIFSR;SLTS(0.022)S(0.978)LENIFSR;SLTS(0.408)S(0.592)LENIFSR;SLTS(0.225)S(0.774)LENIFSR;SLT(0.002)S(0.248)S(0.75)LENIFSR;SLTS(0.028)S(0.972)LENIFSR 296.1 2.9410999999999996e-36 13929610000.0 6526130.0 7312820.0 6658870.0 7343740.0 7198870.0 7166710.0 7380500.0 6972310.0 8319290.0 7665310.0 True False 6490994.041201207 7556222.793006953 7596381.016064399 8273456.731029381 8115603.423454571 6671292.206320707 7023477.018752027 7492619.176872791 6269112.45227468 7176103.353197939 0.904529062880425 1.0529701735189778 1.0585662778503837 1.1529177220311941 1.1309206436997532 0.9296538633808459 0.978731307656279 1.0441069209982603 0.8736095543385576 1.0 22.774769238019527 2.7304165732718313 24.960937027750756 0.9753705126108161 1.0646758792729623 0.281202548548921 0.07468885885751632 889.9187316495296 2727534.4007761395 0.02491077961291435 0.023884816349518622 537.5471619307563 -2.7304165732718313 0.08930536666214617 SLTTECHLLDS(ph)PGLNCSNPFTQLER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTTECHLLDSPGLNCSNPFTQLER 25 0 Q15398-1;Q15398 Q15398-1 DLGAP5 Disks large-associated protein 5 1 SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER 111.79 0.0016031 97721000.0 50006.0 55046.0 54570.0 46185.0 49974.0 65323.0 69135.0 44749.0 64921.0 72021.0 True False 49736.7732521889 56878.17283399034 62252.98166905705 52032.016264545244 56337.89268089557 60807.374763801934 65790.67592865271 48088.39761081777 48922.08944683071 67424.55811971973 0.7376655426332313 0.8435824337624412 0.9232983263830965 0.7717071897179758 0.8355693274379558 0.9018579648061132 0.975767254000154 0.713217838601649 0.7255826483870187 1.0 16.04098654105181 4.737362769597782 7.800386526283561 0.8456750111116436 0.7367051960671464 0.11698920422432946 0.09352205406337465 0.22273553870552926 155.07223391033955 0.022424686885530027 0.13063484614150614 54621.39273780484 -4.737362769597782 -0.10896981504449721 SLTVSDDAESS(ph)EPER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTVSDDAESSEPER 15 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 SLTVS(0.092)DDAES(0.02)S(0.888)EPER;SLTVSDDAES(0.034)S(0.966)EPER 324.38 5.194699999999998e-57 539250000.0 609640.0 575970.0 501420.0 533980.0 511420.0 558340.0 583810.0 555460.0 672280.0 558600.0 True False 606357.7659773718 595140.8132687823 572015.5775792294 601581.8132497978 576546.3055761724 519743.26999098563 555568.8799292216 596911.2457687283 506605.60209046904 522949.6697584791 1.159495456336007 1.1380460638662306 1.0938252965020727 1.1503627366810163 1.102489090092449 0.9938686264607943 1.062375429333013 1.1414315378464774 0.9687463849521916 1.0 18.996312578301197 7.999999983957112 0.11063577490548648 0.958070706398458 1.5733212592193109 0.4847310282041182 0.04847603046172247 105.98126458078661 0.8168129582837885 0.4498097852798974 9.966827950984003 99999996.30598861 -7.999999983957112 0.6152505528208528 SLTWPPS(ph)GSPSHAGTTPPENGLSEHPCETEQINAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497 SP100 Nuclear autoantigen Sp-100 1 SLTWPPS(0.455)GS(0.455)PS(0.09)HAGTTPPENGLSEHPCETEQINAK;SLTWPPS(0.46)GS(0.46)PS(0.08)HAGTTPPENGLSEHPCETEQINAK;SLTWPPS(0.464)GS(0.464)PS(0.072)HAGTTPPENGLSEHPCETEQINAK 303.12 2.381999999999999e-90 761250000.0 396637.0 480180.0 475010.0 461362.0 455267.0 577060.0 565280.0 460138.0 555390.0 568130.0 True False 394501.5504625139 496162.5010250604 541887.2791390647 519770.38189548854 513242.55387107783 537169.2004531256 537935.246820696 494475.8340934198 418521.5763447157 531871.4569994358 0.7417234846331157 0.9328616801965117 1.0188312834009432 0.9772481208669934 0.9649748019315545 1.009960571081549 1.0114008558674483 0.9296904874027566 0.786884821204383 1.0 19.020718090920266 4.723685340229304 3.908529157214611 0.9636483949070875 0.7237592839592458 0.5101854621819483 0.06439669297808519 0.1839588640753583 5.704578014459134 0.01570854291431342 0.12296816712688384 52927.98253498758 -4.723685340229304 -0.2398891109478417 SLTWPPSGS(ph)PSHAGTTPPENGLSEHPCETEQINAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497 SP100 Nuclear autoantigen Sp-100 1 SLTWPPS(0.189)GS(0.803)PS(0.008)HAGTTPPENGLSEHPCETEQINAK;S(0.011)LT(0.009)WPPS(0.183)GS(0.626)PS(0.162)HAGT(0.009)TPPENGLSEHPCETEQINAK 341.45 5.340399999999998e-118 325780000.0 237486.0 259104.0 258588.0 241481.0 263858.0 335369.0 322670.0 256466.0 330487.0 307224.0 True False 236207.40176317515 267728.1200083244 294994.94271281175 272052.469840395 297458.7522911063 312185.73040370917 307061.2193808977 275604.79522796045 249042.9071489153 287616.7012923007 0.8212575997911922 0.930850395006221 1.0256530354021849 0.9458855087970429 1.0342193306389509 1.0854228179414356 1.0676056640703762 0.9582364097412662 0.8658847209843235 1.0 18.133787926889948 4.619226615976829 2.4369705869640472 1.0005063468229498 0.80284337061157 0.4437285393574102 0.06062181277988777 0.39430394751368397 3.4386640293671618 0.016111558608163372 0.1450842959154179 41612.76903509898 -4.619226615976829 -0.19766297621137985 SLVASLAEPDFVVTDFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SLVASLAEPDFVVTDFAK 18 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 161.21 8.995200000000001e-11 26367000.0 93473.0 96650.0 90778.0 87669.0 86628.0 102150.0 93423.0 92132.0 130050.0 111070.0 False True 92969.75175382661 99866.93682384134 103558.75334347908 98767.88641109482 97659.56231561652 95088.6109352353 88903.77257948264 99007.35767681655 98000.92008071874 103981.41750818887 0.8940996764782991 0.9604306155566354 0.9959351952027726 0.9498609345589709 0.9392020675994874 0.9144769634223034 0.854996736051239 0.9521639543817472 0.9424849403788985 1.0 16.665966202186414 3.067750840984828 3.5098257092683225 0.9253875770335444 0.9539861001194859 0.01810466036406133 0.04131099568371449 0.613171752937372 15.285086182880786 0.0125431404891344 0.015040668742172308 1168.8286301476983 -3.067750840984828 0.028598523085941574 SLVDTVYALKDEVQELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLVDTVYALKDEVQELR 17 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 0 ; 180.31 7.9044e-10 458580000.0 578410.0 567890.0 508170.0 469420.0 496300.0 693290.0 609500.0 572150.0 788550.0 668490.0 False True 575295.9048273918 586791.8753532461 579715.9189071781 528848.5238692824 559500.8631994331 645364.4941291165 580016.1564838914 614846.7383188311 594222.4185286475 625826.3958769162 0.9192579741244049 0.9376272385108103 0.9263206581353484 0.8450402976823196 0.8940192789654599 1.0312196775030928 0.9268004039221853 0.982455745506387 0.9495004084895063 1.0 19.255402983762895 2.7685397256234032 24.85108246497801 0.9731260465416653 0.9042102429045692 0.5209304369667811 0.03510740653088119 562.688924519782 466438.1713323907 0.010777362069351296 0.011429648810602551 586.8670488482013 -2.7685397256234032 -0.06891580363709615 SLVEIIEHGLVDEQQK ddPTM_BT-474_Trastuzumab_2h_R1 6 SLVEIIEHGLVDEQQK 16 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;;;;; 295.66 1.1390999999999996e-45 1215394000.0 1514302.0 1374336.0 1268030.0 1252365.0 1257597.0 1562741.0 1589094.0 1449601.0 2077816.0 1587818.0 False True 1506149.1662867675 1420079.9429563452 1446557.6020856579 1410914.2805921244 1417744.5235885896 1454712.392966623 1512223.452291409 1557777.5875447264 1565766.0881079487 1486482.0958406187 1.0132306137431322 0.9553293288428594 0.9731416248694317 0.949163319585252 0.9537582239003307 0.9786275913023832 1.0173169636706814 1.047962563359224 1.053336661429813 1.0 20.503470655914832 2.179681122527063 2.8235127645833997 1.038172819845475 0.967233182772731 0.648575803794702 0.02152030697868502 0.14405866993305586 2.3319782383578147 0.008971271599001997 0.006174891411687 151.24503353072606 -2.179681122527063 -0.07093963707274398 SLVESVSS(ph)SPNKESNEEEQVWHFLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 1 SLVES(0.002)VS(0.077)S(0.46)S(0.46)PNKESNEEEQVWHFLGK;S(0.001)LVES(0.031)VS(0.087)S(0.427)S(0.427)PNKES(0.026)NEEEQVWHFLGK;S(0.002)LVES(0.057)VS(0.071)S(0.435)S(0.435)PNKESNEEEQVWHFLGK 201.76 2.9241e-25 1893680000.0 1107430.0 904674.0 861180.0 800661.0 770217.0 1205070.0 1159430.0 1101010.0 1587530.0 1026280.0 True False 1101467.7199270388 934785.5272030192 982426.658489252 902024.600506378 868299.5695161755 1121766.3473296517 1103343.9414472834 1183172.9570154957 1196304.5033121346 960781.931757487 1.1464284282617656 0.9729424506277773 1.0225282408175307 0.9388442587137036 0.9037426088226489 1.1675556234469229 1.1483812350936058 1.2314687838177862 1.245136345480419 1.0 19.873849494746622 2.6834673579659354 9.792281788630126 1.1768174774782239 0.9938203416719005 0.4571403794406258 0.08688835274409841 0.45899089544563687 79.76750195308195 0.027518389611754308 0.025957718352803225 482.46671598661277 -2.6834673579659354 -0.18299713580632337 SLVESVSSS(ph)PNKESNEEEQVWHFLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 1 S(0.001)LVES(0.031)VS(0.058)S(0.388)S(0.523)PNKESNEEEQVWHFLGK;SLVES(0.008)VS(0.058)S(0.401)S(0.533)PNKESNEEEQVWHFLGK;SLVES(0.001)VS(0.037)S(0.271)S(0.689)PNKES(0.002)NEEEQVWHFLGK 261.94 4.532299999999998e-53 16730020000.0 3327010.0 2614910.0 2410550.0 2386350.0 2311740.0 3413020.0 3433990.0 2973900.0 4476050.0 3091160.0 True False 3309097.7478255625 2701945.6986035216 2749934.487123797 2688461.6653220253 2606126.3862435133 3177085.9607848916 3267874.7845842782 3195827.5191582153 3372987.453497124 2893879.5223247753 1.143481517560629 0.9336759453043625 0.9502588016914605 0.9290164447351529 0.9005649219805468 1.0978639353419262 1.1292366386970585 1.1043402099168498 1.1655590453839837 1.0 21.464573430322144 2.665155642875051 7.587771127773014 1.1087329580767835 0.9659255318934792 0.4278964144691796 0.07350112794398019 0.2533884016076418 23.430651640790757 0.023171455780113856 0.021842714285554597 462.5467596523526 -2.665155642875051 -0.14280742618330433 SLVGS(ph)WLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLVGSWLK 8 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 SLVGS(1)WLK;SLVGS(1)WLK 129.88 0.0011244000000000002 434930000.0 1368800.0 1168170.0 1104280.0 1042220.0 939660.0 1288290.0 1315240.0 1075250.0 1671800.0 1288730.0 True False 1361430.5328879773 1207051.832276322 1259753.0254261733 1174164.9451387767 1059320.1311988307 1199233.5446084603 1251616.816495282 1155490.615008867 1259807.2909722824 1206482.1480627381 1.1284299026504798 1.0004721861939678 1.044153887771131 0.9732136915777382 0.8780238753634215 0.9939919513389261 1.0374101419610868 0.9577353604976678 1.044198866096087 1.0 20.202375137930552 5.813861766421631 1.0939025015556547 0.9837402778077957 2.2453327991900793 0.43269353356244744 0.04696658670508331 14.337265901297876 2.261682450868688 0.013765771842032036 35.96122316661943 651421.0172820599 -5.813861766421631 1.2615925213822836 SLVIELDKELYGPDNHLVEWHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLVIELDKELYGPDNHLVEWHR 22 1 J3KMX2;B9EGA3;Q92925-3;Q92925-2;Q92925 J3KMX2 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 0 ; 181.26 3.2455e-17 737810000.0 623210.0 677900.0 615550.0 540020.0 561120.0 733190.0 721410.0 340190.0 874930.0 585200.0 False True 619854.7066051405 700463.4917007963 702214.0895434861 608386.4766305024 632575.3059811926 682506.3010436132 686512.642246176 365576.7052498179 659315.2249613462 547852.0349850733 1.131427223085936 1.278563274333518 1.2817586587272942 1.1104941440019995 1.154646265023781 1.2457858280333096 1.253098644171105 0.6672909506665945 1.203454916397837 1.0 19.063426774159733 1.772095845198951 24.999999999999584 0.9239831140222664 1.209175905935399 0.4151233584168428 0.13486391816916898 26.173205888980018 19521.00256360703 0.05873044819777006 0.03258278819952402 59.16922013407731 -1.772095845198951 0.2851927919131326 SLVLQRPQTWADCVTWACHHWHTQYSNNIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLVLQRPQTWADCVTWACHHWHTQYSNNIR 30 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 159.65 1.5507e-12 1083500000.0 24993.0 0.0 0.0 21426.0 0.0 18592.0 27507.0 24265.0 27647.0 0.0 False True 24858.440464983345 0.0 0.0 24138.52940314274 0.0 17306.778800860433 26176.381323055648 26075.777515173348 20833.76730081991 0.0 0.0 SLVPAAELLESR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLVPAAELLESR 12 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 143.5 0.00014485 97624000.0 77140.0 88975.0 81905.0 83563.0 83011.0 90466.0 93281.0 67052.0 93331.0 92222.0 False True 76724.68681105977 91936.47908847673 93436.51206897772 94142.06723209258 93581.95880525516 84212.29835405758 88768.6416619752 72055.76072315696 70330.82562132682 86336.3130047735 0.8886722647840856 1.064864549907217 1.08223884964617 1.090411021222177 1.0839235027337923 0.9753983627885697 1.028172718668994 0.83459390626483 0.8146146525557357 1.0 16.397679863322804 1.769154950998417 7.589459075747521 0.8692982496314864 1.0363196030034736 0.4490246688635441 0.07416375098266768 0.14152744064774375 23.302456563466894 0.0344712875404125 0.01904641428745139 58.76989989955425 -1.769154950998417 0.1670213533719872 SLVQDSLSTNSSDLVAPS(ph)PDAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SLVQDSLSTNSSDLVAPSPDAFR 23 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SLVQDSLSTNSSDLVAPS(1)PDAFR;SLVQDSLSTNSSDLVAPS(1)PDAFR 119.06 0.00014318 182665000.0 176120.0 218296.0 198135.0 208141.0 215779.0 183787.0 173509.0 154348.0 170143.0 171836.0 True False 175171.78948877152 225561.8503972812 226030.68577970704 234491.6292588225 243257.17662766553 171082.2372780623 165115.70680125296 165866.23152326295 128213.5374493942 160869.27936379894 1.0889076533539264 1.4021437237073886 1.4050581109930156 1.4576532585101585 1.5121418930307378 1.0634860674123316 1.0263967580028186 1.0310621902405843 0.7970044868507481 1.0 17.295529320441638 2.6015321369847486 4.7046761794440215 0.982536037235605 1.3800676438910797 0.719688413844435 0.12235988100191972 0.12674768350989857 4.316408060693581 0.04132196034400834 0.03863756197544484 399.51412351734706 -2.6015321369847486 0.3975316066554747 SLYGER ddPTM_BT-474_Trastuzumab_2h_R1 2 SLYGER 6 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 0 ; 129.16 0.037954 684090000.0 519950.0 660440.0 549460.0 560450.0 566110.0 517610.0 511290.0 518470.0 614260.0 567210.0 False True 517150.6469718761 682422.346155589 626819.1920080652 631402.9125357675 638200.752903146 481828.8390228795 486556.9493825253 557160.8641373144 462883.8536623006 531010.1721870877 0.9738996992126762 1.2851398747125227 1.1804278427028356 1.1890599193894709 1.2018616334119725 0.9073815611447826 0.9162855532098912 1.0492470640299019 0.8717043060697064 1.0 19.018379972421613 2.7422205452365587 24.999485736036693 0.957300077347961 1.174766370343004 0.6088209712971612 0.08676316485372428 210.9336501414829 1440804.403257787 0.02590920347076981 0.026539134866389487 552.3578687487661 -2.7422205452365587 0.21746629299504305 SLYQSAGVAPES(ph)FEYIEAHGTGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SLYQSAGVAPESFEYIEAHGTGTK 24 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 SLYQSAGVAPES(1)FEYIEAHGTGTK;SLYQS(0.005)AGVAPES(0.937)FEY(0.058)IEAHGTGTK 184.43 1.6735999999999998e-17 340420000.0 160287.0 206851.0 172227.0 185213.0 181455.0 207496.0 239143.0 218756.0 248964.0 255627.0 True False 159424.03260155997 213735.91049093017 196475.06457607998 208660.9468096834 204562.21868195286 193152.28991304536 227574.73947502443 235080.68354046016 187610.15814668243 239312.66600671483 0.666174654529513 0.8931241043670166 0.8209973498459422 0.871917689487562 0.8547906055094179 0.8071126912589981 0.9509515032047612 0.982316094936087 0.7839541520189254 1.0 17.868537230283128 7.917122008936614 0.19213922545323125 0.9700019649020954 3.308358689294696e-23 0.4057701241960706 0.07380629508229594 53.516987153241715 0.6471704732587907 0.14332468426303835 15.361574967140516 82627004.59410131 -7.917122008936614 -0.9700019649020954 SLYQSAGVAPESFEYIEAHGTGTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SLYQSAGVAPESFEYIEAHGTGTK 24 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 333.45 6.5305e-87 5839080000.0 3057590.0 3138240.0 3075500.0 3005650.0 3038470.0 4070310.0 4026410.0 3516310.0 4106250.0 3731730.0 False True 3041128.2751701856 3242694.4212938556 3508503.6672747824 3386164.981823761 3425401.1440773373 3788939.0501791253 3831637.165920109 3778714.9076603893 3094319.708430993 3493567.7965052086 0.8704935619719127 0.9281899222158179 1.0042752485824133 0.9692569828503435 0.9804879548935441 1.0845471652129928 1.096769087965915 1.0816206032813869 0.8857190953976609 1.0 21.73626970694141 4.759478144890498 0.705056747930962 1.0370076848102678 0.7615425848129932 0.36701646165268864 0.06086972131685026 3.038386864608851 1.1224264897899714 0.02529561303679159 0.6756462255683348 57474.889488580586 -4.759478144890498 -0.27546509999727464 SLYSTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SLYSTSPR 8 0 F5H4N6;Q9Y3R0-3;Q9Y3R0-2;Q9Y3R0;F5H4P8;H0YFK8;H0YGM4 F5H4N6 GRIP1 Glutamate receptor-interacting protein 1 1 SLYS(0.001)T(0.009)S(0.991)PR 70.363 0.053617999999999985 0.0 222740.0 275600.0 230050.0 248570.0 235600.0 265420.0 271610.0 253110.0 304260.0 262270.0 True False 221540.7925887402 284773.17939628166 262439.0403695542 280038.9365135437 265602.26348939433 247072.1401314746 258471.1866490402 271998.35346653743 229279.1998751206 245531.704059356 0.9022899647011935 1.1598224371360173 1.0688600943612192 1.1405408421140015 1.0817432498460011 1.006273878471296 1.0526998443612647 1.107793205397146 0.9338069018561186 1.0 17.905549797698 2.7671497294146605 22.80600030700575 1.0361252355853212 1.079388528037086 0.0732158712463703 0.07730828401828047 713.5413700926167 569200.3971403271 0.022863953269258913 0.02424347513479986 584.9917338918971 -2.7671497294146605 0.043263292451764856 SLYVAEYHSEPVEDEKP ddPTM_BT-474_Trastuzumab_2h_R1 4 SLYVAEYHSEPVEDEKP 17 1 P26196 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 ;;; 241.93 3.5336999999999997e-20 2210290000.0 2136844.0 1887142.0 1696527.0 1658169.0 1675113.0 2213870.0 2152103.0 2084674.0 3012860.0 2200388.0 False True 2125339.4693296854 1949954.380668573 1935383.2551229687 1868093.0253841018 1888428.7113773737 2060830.3777894175 2047997.556058166 2240242.9596400806 2270381.0232556234 2059957.3539930563 1.0317395480104923 0.9465993928897355 0.9395258845390119 0.9068600482252501 0.9167319448224553 1.0004238067330224 0.9941941526548076 1.0875190961101964 1.102149526957283 1.0 20.974183039829956 2.1003951283680875 1.8856181547526645 1.0704853914870993 0.947885821004573 0.5469963237483898 0.042939337607578745 0.23519961780517662 1.6078409581765187 0.02384716082443744 0.013344603859814329 126.00713243516454 -2.1003951283680875 -0.12259957048252634 SMDELNHDFQALALEGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SMDELNHDFQALALEGR 17 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;Q14671-4;E9PR38 Q5T1Z4 PUM1 Pumilio homolog 1 0 ;;; 255.24 4.6296e-27 599590000.0 422386.0 565900.0 530960.0 546020.0 545210.0 555660.0 519960.0 471833.0 558560.0 530620.0 False True 420111.9207074959 584735.6394062255 605714.5528129467 615146.0760153087 614639.2617871509 517248.5320829445 494807.5483599094 507043.5743794267 420910.3723205395 496755.3773133622 0.8457118732757708 1.1771098333523702 1.219341713196697 1.2383279660549373 1.2373077169518498 1.041254016977968 0.9960788970942048 1.0207107915403089 0.8473192068840388 1.0 18.9221760589854 2.5027563173991223 3.9853077814360853 0.9767749643342193 1.15487288098913 0.33979239637783165 0.11577455367834302 0.25998924771482407 9.180636121092684 0.0409223083265475 0.03635538535616004 318.2411369889728 -2.5027563173991223 0.1780979166549107 SMDFEEAER ddPTM_BT-474_Trastuzumab_2h_R1 6 SMDFEEAER 9 0 O43396;K7ER96 O43396 TXNL1 Thioredoxin-like protein 1 0 ;;;;; 235.15 7.961e-10 6862640000.0 4134570.0 5025890.0 4597100.0 4680430.0 4460220.0 4839230.0 4920970.0 4095800.0 5085820.0 4719460.0 False True 4112309.934513913 5193173.710435333 5244331.721290488 5272971.9581047045 5028202.579204863 4504705.420422109 4682923.881169056 4401449.394050985 3832487.807496509 4418260.02226701 0.9307532634541247 1.1753888825607675 1.1869676512609642 1.1934498946486045 1.1380503985423862 1.0195654845390343 1.0599022822487134 0.996195192647942 0.8674201582029251 1.0 22.075046895621778 2.0700864433974435 1.165219103606195 0.9440959022924401 1.131295005811207 0.4289797055682971 0.08150244749908706 0.4475611851810638 1.1317795963349275 0.05979998516882398 0.029330739675539362 117.51314336758028 -2.0700864433974435 0.1871991035187669 SMDS(ph)SDLSDGAVTLQEYLELKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMDSSDLSDGAVTLQEYLELKK 22 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 S(0.382)MDS(0.498)S(0.12)DLSDGAVTLQEYLELKK 134.69 4.3919e-06 247840000.0 191990.0 159490.0 146970.0 124910.0 120230.0 190370.0 185250.0 187110.0 243540.0 181410.0 True False 190956.34717209445 164798.5282362589 167662.09851385964 140723.59319268924 135540.5778409587 177210.16998277762 176288.74977627746 201073.09832532835 183522.83026880576 169832.2584870851 1.124382074837777 0.9703605763965684 0.9872217446051894 0.8286034375700807 0.7980849989771871 1.0434423445899919 1.038016872334553 1.1839511534295408 1.0806123165509323 1.0 17.373750989506593 2.3952542736280487 3.0838090515130965 1.100644820846721 0.9388282778437431 0.28561048440848547 0.09638019066261554 0.28733055126294 5.5413894180483565 0.03804309933225611 0.031068421810643 248.4587372302776 -2.3952542736280487 -0.16181654300297788 SMDSS(ph)DLSDGAVTLQEYLELKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMDSSDLSDGAVTLQEYLELKK 22 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 S(0.341)MDS(0.063)S(0.595)DLS(0.001)DGAVTLQEYLELKK 165.24 7.9951e-12 40240000.0 96700.0 69362.0 61332.0 57151.0 51511.0 84447.0 93019.0 86416.0 133830.0 87185.0 True False 96179.37794437994 71670.67223978562 69967.01249269943 64386.31074017596 58070.620520382836 78609.37765685565 88519.31560291242 92864.80073155664 100849.38973012372 81620.7786571662 1.1783687870507165 0.8780934636855859 0.8572205955861267 0.7888470534031462 0.7114685926275993 0.9631049709417817 1.0845193718957562 1.1377593090800933 1.2355847541435978 1.0 16.316648853432326 2.2912936875634617 3.0622925675406063 1.131812716137288 0.8734836709855051 0.42959313593111004 0.12528037725940686 0.22759156189656218 4.374276904099507 0.05026934127099347 0.03850080698110229 195.56615064343524 -2.2912936875634617 -0.2583290451517829 SMDSYLNQSYGMDNHSGGGGGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SMDSYLNQSYGMDNHSGGGGGSR 23 0 Q5BKZ1;Q5BKZ1-2 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 0 ;; 203.72 1.8522999999999998e-24 839880000.0 431600.0 600910.0 564150.0 588560.0 584420.0 554650.0 532190.0 517520.0 487810.0 547060.0 False True 429276.31355526793 620910.926092234 643577.4163202962 663071.6356535836 658842.4228712723 516308.35100566084 506445.93653677125 556139.9703133117 367595.7618191104 512146.16243837064 0.8381910185784612 1.212370552843792 1.2566284071253613 1.294692188059448 1.2864343642339688 1.0081269545152378 0.9888699236279344 1.0859008835787871 0.7177555720987078 1.0 18.96619607710767 2.6112644354075947 5.69012447599317 0.9739245143309854 1.189847747898316 0.33984753166723636 0.1510879840758384 0.2865196571367666 12.112555166847264 0.05002085208352742 0.046968611996224596 408.56808159923236 -2.6112644354075947 0.21592323356733067 SMEAEMIQLQEELAAAER ddPTM_BT-474_Trastuzumab_2h_R1 6 SMEAEMIQLQEELAAAER 18 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;;; 290.32 8.695399999999997e-49 386031000.0 262039.0 314683.0 286917.0 298672.0 276154.0 309241.0 316776.0 288493.0 332799.0 312911.0 False True 260628.21113927002 325157.0334251093 327312.4196727289 336483.84457646956 311320.5750070043 287863.89754501276 301452.33467816474 310021.812597771 250785.14572812803 292940.7520834151 0.8896959855727274 1.1099754169147507 1.1173331717927946 1.148641294129864 1.062742458305547 0.982669346950551 1.0290556453283288 1.0583089255860587 0.8560951111940778 1.0 18.160249380317165 2.8170368174514078 5.438800660633984 0.9983053433542709 1.0765798818765442 0.17916100722522343 0.08245845156334794 0.41414925306337136 21.413080266639202 0.025583689980635073 0.027108943524444377 656.2008935822702 -2.8170368174514078 0.07827453852227328 SMEMLVEHQAHDILT ddPTM_BT-474_Trastuzumab_2h_R1 4 SMEMLVEHQAHDILT 15 0 Q9UNM6;J3KNQ3;A0A087WUL9;Q9UNM6-2;H0YD73 Q9UNM6 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ;;; 116.86 0.00041527 1694760000.0 1690470.0 1869160.0 1833700.0 2076000.0 1913730.0 2000360.0 2095350.0 779930.0 2283370.0 1683680.0 False True 1681368.6973488734 1931373.8606689197 2091869.0211938755 2338821.3871429255 2157432.17193361 1862079.8215409396 1993989.9154856822 838132.3370042936 1720664.059090431 1576226.1009290286 1.0667052755679365 1.2253152384233246 1.3271376612536276 1.4838108477993246 1.3687326777941426 1.1813532464939063 1.2650405384801224 0.5317335733181285 1.0916353041459412 1.0 20.588043065598487 1.7685661832783717 24.999999972070746 0.8300309221304769 1.282332371584933 0.5257695345502906 0.17222529699818576 16.087711117471393 13411.2559389648 0.0783512261188217 0.04345793286043632 58.690280246587655 -1.7685661832783717 0.45230144945445616 SMGFIGHYLDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SMGFIGHYLDQK 12 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 151.78 6.6333e-05 2876600000.0 4504000.0 4446700.0 4479000.0 4118000.0 3709800.0 4478800.0 5185700.0 4436800.0 6355300.0 4928300.0 False True 4479750.964441443 4594705.721413089 5109604.267834093 4639338.377771953 4182221.040292678 4169191.0979611524 4934847.879702242 4767896.5456138905 4789121.471656992 4613771.674670089 0.9709520280415199 0.9958675993088966 1.107467952063202 1.0055413888906177 0.9064646747157749 0.9036405335899664 1.0695908310319913 1.0334053962379537 1.0380057378976044 1.0 22.137515179332983 -0.8275433240241683 6.017746975525143 0.99999999866414 1.0055469530356178 0.0 0.06149137246812038 4.724745360375468e-10 7.851352369035834e-11 0.06341445356759376 0.014946928822631971 0.1487498977867116 0.8275433240241683 0.005546954371477786 SMGTGDTPGLEVPS(ph)SPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR 148.7 8.3147e-08 440140000.0 610680.0 682700.0 626350.0 672550.0 665490.0 708390.0 662930.0 600510.0 777330.0 743700.0 True False 607392.1667329266 705423.2567991359 714534.6356682036 757694.7610418949 750236.2068317352 659420.6666706936 630861.5432614713 645323.105527993 585767.4371883507 696236.4292863972 0.8723935450425498 1.0131949825178708 1.0262815986238483 1.088272214969402 1.077559540515116 0.9471217519407341 0.9061024627913662 0.9268735136272782 0.8413340821432298 1.0 19.409217776829127 2.5345061100596005 5.906536081701636 0.9150666500583967 1.0198974194010584 0.33264451435392994 0.06537330235677384 0.2401284877356314 18.002058303310932 0.021862300785711615 0.020295397166732246 342.378204488298 -2.5345061100596005 0.10483076934266167 SMGTGDTPGLEVPS(ph)SPLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SMGTGDTPGLEVPS(0.5)S(0.5)PLRK;SMGTGDTPGLEVPS(0.5)S(0.5)PLRK 85.51799999999999 0.0012977 1873780000.0 771420.0 780030.0 736310.0 715800.0 704790.0 886120.0 861390.0 800740.0 1240040.0 941920.0 True False 767266.7604328197 805992.8270119067 839976.0478787491 806420.2066073735 794540.8288823855 824864.6101021102 819721.2748706479 860495.2848753309 934448.7576846926 881805.8591817156 0.870108485267739 0.9140252569424286 0.9525634686281365 0.9145099209883939 0.9010382734581635 0.9354265471399285 0.9295938174320139 0.9758330316310665 1.0596989665637147 1.0 19.750101537446632 1.5649074674564127 2.532565439634774 1.0294908248842494 0.9171658813565513 0.7680113881861333 0.02500298207656662 0.11324166908259242 1.599140056406541 0.018039691646386722 0.006642175337531678 36.72040541776694 -1.5649074674564127 -0.11232494352769806 SMGTGDTPGLEVPSS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SMGTGDTPGLEVPS(0.003)S(0.997)PLR;SMGTGDTPGLEVPS(0.028)S(0.972)PLR;SMGTGDTPGLEVPS(0.001)S(0.999)PLR;SMGTGDTPGLEVPS(0.003)S(0.997)PLR;SMGTGDTPGLEVPS(0.221)S(0.779)PLR 386.09 1.8210999999999996e-126 1244490000.0 1342690.0 1520610.0 1369980.0 1423890.0 1365950.0 1507600.0 1474260.0 1328950.0 1658160.0 1484700.0 True False 1335461.106226883 1571222.584621843 1562861.2759203734 1604154.3280052675 1539895.635880042 1403383.1605086683 1402944.4115798888 1428122.9972713639 1249528.6862056477 1389945.1748843798 0.960801282207387 1.130420546805051 1.124404979534806 1.15411338302513 1.1078822846434468 1.0096679968872917 1.009352337725544 1.027467142644788 0.8989769587923405 1.0 20.406596547609407 2.678971317032864 4.197156637135751 0.9936319828302786 1.1025710529093753 0.4492539120108352 0.05874170005845004 0.21436606606059927 7.745246129704727 0.019463167601885475 0.018590815370653286 477.4977362913741 -2.678971317032864 0.10893907007909664 SMIEISR ddPTM_BT-474_Trastuzumab_2h_R1 2 SMIEISR 7 0 P49368;P49368-2;B4DUR8;Q5SZX6;E9PRC8;Q5SZW8;E9PM09;Q5SZX9 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 151.29 0.0043996 335580000.0 382970.0 462310.0 413770.0 428950.0 407230.0 438130.0 407660.0 380140.0 512410.0 445720.0 False True 380908.1320719668 477697.7088777034 472025.21944668767 483255.026018766 459088.3266586842 407843.10434708366 387939.92838756926 408507.97711180715 386133.4214422228 417273.7679999098 0.9128494558806033 1.1448064688260169 1.1312123014806665 1.1581246248359194 1.1002089320380748 0.9773993373750056 0.9297012132994976 0.9789927103970155 0.9253719046204367 1.0 18.670634702572322 2.7017936049411277 4.681630663262663 0.9582255998368594 1.099091375542041 0.468773617472231 0.06743307798022387 0.17090432682068152 9.17651014598597 0.02170407727985842 0.02094362118728034 503.2613809081121 -2.7017936049411277 0.14086577570518166 SMIGSTAQQFLTFLSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMIGSTAQQFLTFLSHR 17 0 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 0 70.96 0.031528 52391000.0 27111.0 30892.0 31543.0 28480.0 33379.0 38533.0 37875.0 30733.0 38850.0 29411.0 False True 26965.03738831526 31920.221545391643 35983.98022332903 32085.565079879816 37629.617797166786 35869.30440692531 36042.84155344941 33026.45251901186 29275.938063328857 27533.964799976093 0.9793372507085748 1.1593034921516046 1.306894248058321 1.1653085675444632 1.3666617964587309 1.3027293623530911 1.309032019735883 1.199480451105993 1.0632663430787228 1.0 14.748924747761656 1.190046623923217 3.019311196291247 1.0048124526336402 1.234869530696057 0.35876188310513 0.10431651821455117 0.26143933133320274 4.192716643794384 0.098880704676544 0.027308214600307384 15.489829018988877 -1.190046623923217 0.23005707806241693 SMNLRPEEDDIPWEDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SMNLRPEEDDIPWEDLR 17 1 Q14CX7;Q14CX7-2 Q14CX7 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit 0 ;;;; 219.23 4.0085e-15 899384000.0 783348.0 967742.0 884588.0 892511.0 890302.0 930101.0 926085.0 848751.0 1043104.0 926501.0 False True 779130.541406145 999952.7074576063 1009130.3014232691 1005502.8010887845 1003676.6824666162 865805.3070922486 881286.7305617464 912089.1094902488 786044.996077493 867370.9129625859 0.8982668541938446 1.1528547850909308 1.1634357186091135 1.159253539704711 1.1571481905456862 0.9981949984177013 1.0160436756538558 1.0515560250630538 0.9062385933518144 1.0 19.72628953808025 2.726350027910208 24.342014802686432 1.0038364044646504 1.1149122942023395 0.3139044243107749 0.08153372184397986 672.4002278393986 1340438.335992725 0.026272617252363326 0.02495028864962798 532.5372949255486 -2.726350027910208 0.11107588973768912 SMQGFPFYDKPMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMQGFPFYDKPMR 13 1 P09012;M0R221;M0R2B8;M0QZG7 P09012 SNRPA U1 small nuclear ribonucleoprotein A 0 93.51 0.0050899 398470000.0 353220.0 397450.0 408140.0 423010.0 380060.0 421650.0 392070.0 405690.0 475390.0 401620.0 False True 351318.3027664313 410678.88298640185 465602.5643835248 476563.02262780716 428458.3882078911 392502.3279573365 373104.07624715235 435964.6478520784 358236.5043996372 375988.2677558191 0.9343863436573787 1.0922651534784382 1.2383433322603157 1.2674943967594892 1.1395525471186991 1.043921743356743 0.9923290385471819 1.1595166265539174 0.952786390218669 1.0 18.520328119545646 2.7486201327021598 7.605087110338705 1.046195897208999 1.1453873281276228 0.20694961560541558 0.09875640139747044 0.2739685679329722 116.06604357597277 0.03267149671576398 0.03331941678791782 560.557454951843 -2.7486201327021598 0.0991914309186237 SMQHS(ph)PNLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SMQHSPNLR 9 0 O76041-2;O76041 O76041-2 NEBL Nebulette 1 SMQHS(1)PNLR;SMQHS(1)PNLR;SMQHS(1)PNLR;SMQHS(1)PNLR;S(0.001)MQHS(0.999)PNLR;SMQHS(1)PNLR 174.05 3.5406e-05 6869422000.0 2243988.0 2739096.0 2914449.0 3058678.0 2741371.0 2508293.0 2540424.0 2146976.0 2454404.0 2310123.0 True False 2231906.617938503 2830265.1545415036 3324778.0863551726 3445906.321186677 3090468.3474710733 2334900.6087966114 2417533.9857578934 2307194.2512432253 1849549.0215286152 2162688.972344197 1.0320053629899817 1.3086787747725477 1.5373352936420424 1.5933434558791717 1.428993436870042 1.0796284804031482 1.117837107726805 1.0668174114479325 0.8552080512639962 1.0 21.04439476799378 2.683758966462885 4.689925564387767 1.0342353993698252 1.3970963131727017 0.5659596997866467 0.15573823229153885 0.17430215946836528 8.2598086396872 0.05502730237050898 0.05250713927184389 482.7907786771854 -2.683758966462885 0.36286091380287644 SMQHSPNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SMQHSPNLR 9 0 O76041-2;O76041 O76041-2 NEBL Nebulette 0 ; 79.148 0.027762 183563000.0 102707.0 124518.0 127811.0 132219.0 105367.0 105382.0 125420.0 107188.0 155500.0 131742.0 False True 102154.03692382034 128662.50635727934 145805.67784687266 148957.91184328066 118784.86289086174 98097.19038254475 119352.95544907264 115186.91284963525 117179.10859324687 123334.11276999928 0.8282707405883983 1.0432029182162827 1.1822007275373982 1.2077592200388723 0.9631144232770276 0.7953775981303906 0.9677205500448126 0.933942039737559 0.950094876117278 1.0 16.912212361910157 3.018605276153318 24.46701679432138 0.9243166433819057 1.0737861942512728 0.26265414889646643 0.10766149262327757 243.44359423088179 320139.591490474 0.03230420762886995 0.038604304790263305 1043.7711198047311 -3.018605276153318 0.14946955086936708 SMS(ph)AEDLLER ddPTM_BT-474_Trastuzumab_2h_R1 5 SMSAEDLLER 10 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 SMS(1)AEDLLER;S(0.002)MS(0.998)AEDLLER;SMS(1)AEDLLER;S(0.019)MS(0.981)AEDLLER;S(0.003)MS(0.997)AEDLLER 218.75 6.9593e-09 4232410000.0 3285480.0 3058810.0 3030480.0 3228720.0 2450150.0 2783720.0 2648160.0 2557320.0 3420340.0 3309720.0 True False 3267791.3407311435 3160620.641760309 3457145.2425956354 3637475.620951882 2762162.0793231726 2591287.98857203 2520058.383846402 2748160.204207834 2577443.0372078805 3098490.8360061455 1.0546396661102349 1.0200516345028947 1.1157513207467749 1.1739507435950562 0.8914540095537317 0.8363064878100838 0.8133180045465863 0.8869350757061214 0.8318381991828387 1.0 21.563134270772945 3.152593188564932 6.659607094078423 0.8640873619509793 1.0871844480980597 0.7447877228484168 0.06133700711736391 0.10085945935669238 6.43349077151353 0.017513841561232864 0.02106116321551263 1420.997090032398 -3.152593188564932 0.22309708614708035 SMS(ph)APSDLEMIGNEDLEFTR ddPTM_BT-474_Trastuzumab_2h_R1 6 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-4;Q9Y4D8;Q9Y4D8-2 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 S(0.145)MS(0.855)APSDLEMIGNEDLEFTR;S(0.148)MS(0.851)APS(0.001)DLEMIGNEDLEFTR;S(0.002)MS(0.997)APS(0.001)DLEMIGNEDLEFTR;S(0.008)MS(0.987)APS(0.005)DLEMIGNEDLEFTR;S(0.006)MS(0.994)APS(0.001)DLEMIGNEDLEFTR;S(0.013)MS(0.987)APSDLEMIGNEDLEFTR 349.02 4.9801999999999985e-95 729724000.0 315195.0 315614.0 288351.0 313796.0 309559.0 312606.0 287064.0 264061.0 324620.0 306945.0 True False 313498.0251414562 326119.02119730844 328948.31440817815 353522.541425771 348979.50375005713 290996.28301537095 273177.6176290268 283766.5726945885 244621.75068514355 287355.50731116417 1.090976219926711 1.134897410698202 1.1447433789809882 1.2302619314094356 1.2144521154841246 1.0126699353642954 0.9506608040513914 0.9875104721320362 0.8512861054034152 1.0 18.132477173842833 2.575267041001227 4.021444237482092 0.9531732792501068 1.1635582383773695 0.7921318239663413 0.0526147073524821 0.10842706961318438 3.114431514592499 0.01849880703386221 0.017096944403203838 376.0685719946617 -2.575267041001227 0.21038495912726274 SMS(ph)FQGIR ddPTM_BT-474_Trastuzumab_2h_R1 6 SMSFQGIR 8 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 SMS(1)FQGIR;SMS(1)FQGIR;S(0.001)MS(0.999)FQGIR;S(0.011)MS(0.989)FQGIR;SMS(1)FQGIR;SMS(1)FQGIR 138.23 0.0011887 2686640000.0 4354320.0 2680860.0 2599730.0 3007700.0 2791850.0 2949780.0 2583670.0 2438220.0 3278090.0 3242030.0 True False 4330876.8249304285 2770090.8044859054 2965749.3867417565 3388474.51161357 3147375.5489085997 2745868.651635226 2458688.011522127 2620172.3574302937 2470248.6436555376 3035120.8697584756 1.4269207095119953 0.9126789091290258 0.977143749460548 1.116421604614123 1.0369852417637182 0.9046982869758767 0.8100791095406296 0.8632843533637584 0.8138880623400384 1.0 21.53332254041103 2.746298285604672 2.7234288171375334 0.8584945173278509 1.0847129359498218 0.389875909482691 0.13572127080642934 0.2931995897123739 4.344617280471359 0.044722188627633164 0.044836620985131796 557.5685711495843 -2.746298285604672 0.2262184186219709 SMS(ph)GGHGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSGGHGLR 9 0 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7 P49815 TSC2 Tuberin 1 S(0.04)MS(0.96)GGHGLR 96.229 0.0048368000000000005 137990000.0 235740.0 225750.0 187260.0 195680.0 209670.0 190280.0 202680.0 187610.0 253300.0 237550.0 True False 234470.8020331761 233263.95228124314 213624.58030690136 220453.06793647757 236370.23168854535 177126.39147094035 192875.5940872113 201610.41086427655 190877.60904610544 222389.35562321285 1.0543256505065488 1.0488989080774835 0.9605881527389226 0.991293253756192 1.0628666602596748 0.7964697364879275 0.8672878859094059 0.9065650210608938 0.8583037102256965 1.0 17.76272821143209 2.7491549900127907 24.99568380109233 0.8807346342238473 1.0197054574075644 0.6050221255625927 0.05558038744734129 470.7107714591748 1110564.6145343925 0.01659116055961724 0.017429928693696837 561.2482372720867 -2.7491549900127907 0.138970823183717 SMS(ph)PTSTPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SMSPTSTPK 9 0 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 SMS(0.564)PT(0.39)S(0.046)TPK;S(0.021)MS(0.745)PT(0.176)S(0.055)T(0.002)PK;S(0.001)MS(0.963)PT(0.031)S(0.005)TPK 168.69 6.192800000000001e-05 856330000.0 1568130.0 1762830.0 1543310.0 1448690.0 1553430.0 1788450.0 1695690.0 1565380.0 2216720.0 1627980.0 True False 1559687.3623156203 1821504.7308967614 1760594.6333090034 1632094.0054624681 1751250.1025990252 1664818.6610584592 1613662.9965351454 1682196.6044385768 1670439.058526186 1524080.9226162012 1.0233625650521876 1.1951496169704752 1.155184483437276 1.0708709631118893 1.149053227169113 1.0923426941140835 1.0587777673676078 1.103744938655198 1.096030423147578 1.0 20.53950807553969 -1.0647356914993378 0.24820199584602615 0.9259571103226989 1.1290824460278017 0.31633098951548444 0.047286909020016296 18.220932237262975 1.0387465192719627 0.9990951328189528 0.07799648309921695 0.08615179062767431 1.0647356914993378 0.20312533570510283 SMSDPDQDFDKEPDSDSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SMSDPDQDFDKEPDSDSTK 19 1 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 0 ; 125.88 2.4126e-05 493900000.0 472480.0 356860.0 349290.0 322650.0 315190.0 472540.0 452960.0 470090.0 699830.0 448610.0 False True 469936.2201774635 368737.86937357415 398466.99591689446 363497.45691795007 355327.57822250517 439874.4220395112 431048.5943247639 505170.50286865194 527366.2737415552 419979.32572565565 1.1189508420813108 0.8779905266442708 0.9487776457291287 0.8655127399185325 0.8460596902206011 1.047371608779742 1.0263566988207868 1.2028461210460772 1.255695796049847 1.0 18.67995878469203 2.146834412067129 1.874529524102744 1.1682642993871344 0.9301590702621516 0.45278753182478215 0.09905755006239698 0.2693033067532951 1.8488610046337628 0.051488297704728736 0.030096025194280188 140.2278941277523 -2.146834412067129 -0.23810522912498278 SMSHQAAIASQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSHQAAIASQR 12 0 Q4G0F5 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B 0 77.91199999999998 0.016158000000000002 0.0 29496.0 43159.0 49456.0 45839.0 42139.0 40289.0 41445.0 32101.0 36200.0 39262.0 False True 29337.196813313676 44595.52122483356 56418.97492074188 51642.21270002146 47505.1518725789 37503.916260104685 39440.14701472502 34496.53962557511 27278.99505514815 36756.26554611067 0.7981549914669709 1.2132767179214263 1.5349485069413369 1.4049907392043512 1.2924368448961108 1.0203407691963724 1.0730183392882344 0.9385213408663419 0.7421590482560503 1.0 15.165702575126543 2.3023284605531837 1.4477767144438762 0.8973448468066709 1.2671637292368714 0.36893767219570783 0.19366622611669382 0.44928373659799054 1.8724194176552806 0.1139885892672831 0.07180964745300926 200.59885997696122 -2.3023284605531837 0.36981888243020045 SMSSIPPYPASSLAS(ph)SSPPGSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 Q13136-2;A0A2R8Y7R9;Q13136;H0YDW2 Q13136-2 PPFIA1 Liprin-alpha-1 1 SMSSIPPYPASSLAS(0.481)S(0.361)S(0.156)PPGS(0.001)GR 136.43 1.1982e-05 494030000.0 156060.0 179130.0 161480.0 176930.0 166310.0 180190.0 166350.0 160320.0 174630.0 162690.0 True False 155219.79029989603 185092.2337636283 184214.98039067845 199329.31985895854 187488.59270340038 167733.88942163496 158303.0149812886 172283.89248846448 131594.77642211388 152306.9849140835 1.0191245686299657 1.2152576841307638 1.2094979130116341 1.3087339360791652 1.230991427012772 1.1012882273012876 1.0393680570236978 1.1311621235601899 0.8640101207199827 1.0 17.21662258087025 1.8758581832750918 1.0250573351216776 0.9637893144181904 1.198989873484839 0.49274587240100964 0.09049855790757289 0.45393524390897133 0.877747254619452 0.07643514835198291 0.03323281559030609 75.13774953316677 -1.8758581832750918 0.2352005590666486 SMSSIPPYPASSLASS(ph)SPPGSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 Q13136-2;A0A2R8Y7R9;Q13136;H0YDW2 Q13136-2 PPFIA1 Liprin-alpha-1 1 SMSSIPPYPAS(0.006)S(0.006)LAS(0.1)S(0.442)S(0.442)PPGS(0.004)GR 73.057 0.0018818 0.0 31422.0 35841.0 30444.0 30800.0 30239.0 37285.0 36352.0 32886.0 41624.0 32370.0 True False 31252.827443312395 37033.94601865796 34730.25057600827 34699.27684200484 34089.757409404905 34707.5757094493 34593.51488187437 35340.12031172434 31366.322933024476 30304.118886648732 1.0313062577470828 1.2220763176511371 1.1460570989018126 1.145035002396737 1.1249215836604982 1.1453088551847197 1.1415449830853008 1.166182077225626 1.0350514743671932 1.0 14.887226275343059 1.1354804547369481 4.659841245030559 1.0030019040447855 1.1440462914184952 0.5512859343321072 0.04457930093417553 0.1324124464698074 4.490262826460454 0.03849271467971123 0.009858159550656073 13.660935937683687 -1.1354804547369481 0.14104438737370972 SMSSIPPYPASSLASSS(ph)PPGSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SMSSIPPYPASSLASSSPPGSGR 23 0 Q13136-2;A0A2R8Y7R9;Q13136;H0YDW2 Q13136-2 PPFIA1 Liprin-alpha-1 1 SMSSIPPYPASSLASS(0.009)S(0.99)PPGSGR;SMSSIPPYPASSLAS(0.019)S(0.034)S(0.946)PPGS(0.001)GR;SMSSIPPYPASSLAS(0.002)S(0.135)S(0.863)PPGSGR 314.81 2.8231999999999982e-73 1293850000.0 367890.0 398207.0 366952.0 376330.0 381681.0 397024.0 398087.0 331919.0 402609.0 419159.0 True False 365909.3211164214 411461.0792737852 418615.6519960389 423973.33941401547 430285.8129494713 369578.6653739676 378830.01096998015 356688.4812305308 303391.40663420275 392407.913759926 0.9324718189559338 1.0485544884436655 1.0667869768094094 1.0804403391145703 1.0965268483670767 0.9418226605900583 0.965398499077537 0.9089737202617981 0.7731531296787677 1.0 18.581994611373865 2.2677635853512172 1.5834059220691912 0.8900647201211959 1.0460341134893445 0.4478906625449136 0.06971863504361875 0.33335701490781855 1.6639893212266323 0.03724191726906616 0.023264129773649316 185.25229005395238 -2.2677635853512172 0.15596939336814863 SMSSLQDDRDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMSSLQDDRDR 11 1 Q14789;Q14789-2;Q14789-4;Q14789-3 Q14789 GOLGB1 Golgin subfamily B member 1 0 109.16 0.0017934 471470000.0 257780.0 318630.0 283340.0 260260.0 276820.0 331320.0 272940.0 281830.0 355200.0 275050.0 False True 256392.1411220502 329235.4069340979 323231.809164571 293208.8893149412 312071.3861593129 308416.6282433881 259736.84946794657 302861.58570374246 267665.71943614964 257496.07351784766 0.9957128185268389 1.2786036013526931 1.2552883030356852 1.1386926616363267 1.2119461935705302 1.1977527425171048 1.0087021752195517 1.1761794328205568 1.039494372785444 1.0 17.974190907666575 1.4212573671229847 0.6552059957649149 1.003076266792635 1.1878857714734414 0.2904713518102777 0.0879951378378323 0.809513958723532 0.7959719035283472 0.08121533892184142 0.03775919770855671 26.37894164392307 -1.4212573671229847 0.18480950468080648 SMVNTKPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMVNTKPEK 9 1 Q16543;K7EQA9 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 89.54799999999999 0.010974 536010000.0 506890.0 451630.0 383710.0 405150.0 383050.0 501970.0 478690.0 469700.0 705570.0 465530.0 False True 504160.9605607736 466662.2315338996 437733.0327328916 456441.94845903415 431829.14698477247 467269.9954102794 455533.9359266186 504751.39908827294 531691.7276536145 435819.4768397152 1.1568114491271184 1.0707695647698823 1.0043907076091512 1.0473188389120651 0.9908440763504236 1.0721640960120078 1.0452353787165733 1.1581662268708321 1.2199815655534803 1.0 18.733371146595502 1.748651087607381 8.367116282669834 1.1407883227972058 1.0518196187601594 0.1802132706750822 0.06651965869488755 0.15803258475095214 41.20086652183328 0.030767956266032126 0.016560586533216255 56.05974108389662 -1.748651087607381 -0.08896870403704638 SMVNTKPEKTEEDSEEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SMVNTKPEKTEEDSEEVR 18 2 Q16543 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ;;; 184.8 3.1707e-14 1237880000.0 1119359.0 1011280.0 894158.0 958700.0 901723.0 1278496.0 1338501.0 1129007.0 2216965.0 1316215.0 False True 1113332.4955164762 1044939.8434683302 1020047.674239338 1080071.3217022736 1016552.0791190461 1190116.5807758647 1273752.593059631 1213259.2353213816 1670623.6815590197 1232213.031831644 0.9035227405942495 0.8480188218063736 0.8278176320883985 0.8765297020895674 0.8249807889208695 0.9658367100750392 1.033711347108738 0.9846180846812761 1.3557912782951929 1.0 20.232820268050343 2.0526814706406005 1.1518116675105448 1.1381774550379335 0.8549970029359757 0.5823919539162394 0.09643284875321183 0.33714669243884504 0.8306558872676106 0.0682813940891508 0.033033077794844046 112.89675798830604 -2.0526814706406005 -0.28318045210195786 SMVS(ph)PVPSPT(ph)GTISVPNSCPAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SMVSPVPSPTGTISVPNSCPASPR 24 0 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 3 S(0.273)MVS(0.724)PVPS(0.26)PT(0.371)GT(0.371)IS(0.001)VPNS(0.028)CPAS(0.972)PR 83.60600000000002 0.039426 168110000.0 309840.0 280970.0 257970.0 266600.0 262640.0 268450.0 288850.0 288470.0 376090.0 305230.0 True False 308171.8558664604 290321.916600048 294289.9336845637 300351.53266488586 296085.6472107578 249892.68336332738 274877.2219858442 309997.0962209792 283407.65884780843 285749.9600794495 1.078466837863343 1.0159998500763652 1.029886176021651 1.0510991237982203 1.036170388714786 0.8745151995606494 0.9619501675850374 1.0848543815536773 0.9918029691728046 1.0 18.124393771325614 5.421505944355165 0.6229062360147888 0.9999159673043515 1.1951427169664883 0.16795816585801804 0.053290315526932155 16.849369710988118 2.660469656560165 0.02536398442844372 2.8411238353898085 263940.44486596336 -5.421505944355165 0.19522674966213682 SMWTEHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SMWTEHK 7 0 O75400-3;O75400;O75400-2;F5H578;H0YG38 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 79.469 0.032541 407580000.0 1036300.0 1151500.0 971030.0 923470.0 839240.0 1084400.0 1108500.0 950010.0 1673000.0 1067900.0 False True 1030720.6759437551 1189826.9814035501 1107742.5836559366 1040381.2073144877 946112.2394348021 1009437.9804030261 1054877.6201187775 1020904.5702530324 1260711.5670514584 999745.7077248112 1.0309828469175784 1.190129622172942 1.1080243456877663 1.0406458355116657 0.9463528896642464 1.009694737975192 1.0551459355793922 1.0211642444320905 1.2610322378082972 1.0 19.931201656466293 3.7688221719077766 5.667762147625544 1.0419920351317915 1.1186514470102884 0.09445409255955728 0.0856703655265584 0.3818982613050874 37.906119107366955 0.02197167981619081 0.03910147078906054 5872.488458477147 -3.7688221719077766 0.0766594118784969 SMYEEEINETR ddPTM_BT-474_Trastuzumab_2h_R1 3 SMYEEEINETR 11 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 ;; 218.6 2.4407e-11 977300000.0 539090.0 619020.0 617110.0 609920.0 645410.0 660450.0 608240.0 525050.0 724660.0 640040.0 False True 536187.5993385292 639623.7064945084 703993.7239837239 687135.8094634928 727599.1378552204 614794.6460320718 578817.1074975597 564231.8971498772 546077.2529465096 599192.0992341868 0.8948509167991664 1.067476869791835 1.1749048842324215 1.146770477016811 1.214300286644546 1.0260393066227445 0.965995893866645 0.9416544341472602 0.9113558967890898 1.0 19.19265907541838 2.416972937503908 3.7219123991483762 0.9501160610537711 1.1060476625965048 0.3989224032398424 0.08313169490180125 0.228784343796251 6.4940321894971 0.03153254202652606 0.02632599545521145 261.19985860314097 -2.416972937503908 0.15593160154273367 SNAAAYLQHLCYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNAAAYLQHLCYR 13 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;E9PKY0 O60716-13 CTNND1 Catenin delta-1 0 ; 124.42 0.00021204 1744630000.0 1170260.0 1486510.0 1549300.0 1425820.0 1269760.0 1531260.0 1475850.0 1324650.0 1907550.0 1490810.0 False True 1163959.45018811 1535987.5867357294 1767427.9732429923 1606328.6658073808 1431456.4095428418 1425407.6003983186 1404457.4972054993 1423502.109436407 1437459.862360438 1395665.229453346 0.8339818357759112 1.1005415584777052 1.2663695676758089 1.150941237130732 1.0256445308904876 1.0213105337277923 1.0062996967801492 1.019945241448742 1.0299460300544008 1.0 20.412521501038817 3.1326648147530656 7.709683038941618 1.0170346025063415 1.10138976249469 0.10032124198663717 0.10089620173860026 0.5026305723173166 32.996165965699745 0.030416733996657466 0.036452500330886546 1357.2655148294432 -3.1326648147530656 0.08435515998834853 SNAIFGMGVLAEHGGHPAQEHFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNAIFGMGVLAEHGGHPAQEHFPK 24 0 Q8TEX9;Q8TEX9-2;H0YMR4;H0YN07 Q8TEX9 IPO4 Importin-4 0 75.226 0.0085486 228620000.0 287290.0 298640.0 295700.0 243070.0 309400.0 439660.0 303920.0 152440.0 435760.0 267680.0 False True 285743.26256091933 308580.0518683078 337331.989729525 273842.6370774714 348800.2560425234 409267.3390483164 289218.22851285385 163815.84687463546 328372.78688484395 250596.43322762218 1.1402527118228076 1.2313824578182158 1.34611648451963 1.0927635064491688 1.3918803693654354 1.6331730415195893 1.1541194931938663 0.6537038247700755 1.3103649667135358 1.0 17.935006355172238 1.9939400623660548 24.995791452708996 0.9381370711601865 1.3065058836214463 0.31992125876027444 0.204406845396766 265.4926328226503 1095094.9249615483 0.0780350480381532 0.05572962559945251 98.6143377110068 -1.9939400623660548 0.36836881246125974 SNATNSSYS(ph)PTTGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SNATNSSYSPTTGR 14 0 Q13009;Q13009-2 Q13009 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 1 SNATNSSYS(0.983)PT(0.017)TGR;SNATNS(0.006)S(0.003)YS(0.99)PTTGR;SNATNSSYS(0.712)PT(0.255)T(0.033)GR 197.48 2.4526e-08 247846000.0 312248.0 332803.0 287800.0 312670.0 319724.0 350367.0 336683.0 309505.0 348950.0 331586.0 True False 310566.8914620139 343880.14667133824 328319.7383975559 352253.98994122294 360438.9562473814 326146.9539652037 320396.3570360395 332601.8347345448 262955.9481904401 310423.8975949428 1.0004606406535674 1.1077760099515626 1.0576496878663784 1.1347515209697618 1.1611185834593856 1.0506502769022543 1.0321252955019244 1.0714440393005467 0.8470866780158743 1.0 18.243880100307848 1.2951268398209548 9.686619956143211 0.9239014236158473 1.0787904182024024 0.5401819827667416 0.05661132230165743 0.2340407616353868 38.2183436518893 0.03722807650706057 0.013565654734864735 19.729988850061126 -1.2951268398209548 0.15488899458655514 SNDRNS(ph)MDIQCEVDALLER ddPTM_BT-474_Trastuzumab_2h_R1 6 SNDRNSMDIQCEVDALLER 19 1 Q02241;H7BYN4;A0A2U3TZL8;A0A2R8Y531;H0YME6;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 SNDRNS(1)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;S(0.033)NDRNS(0.967)MDIQCEVDALLER;S(0.003)NDRNS(0.997)MDIQCEVDALLER 302.35 2.9906999999999997e-50 491814000.0 294711.0 345853.0 309047.0 310799.0 305958.0 428128.0 356447.0 302480.0 409505.0 377669.0 True False 293124.3087214705 357364.5080324467 352558.1313153213 350146.12153306085 344919.93774485623 398532.5190649083 339204.29685022787 325052.5935623177 308587.9798358682 353565.84108130186 0.8290515504128325 1.0107438742937596 0.9971498667323215 0.9903279130761542 0.9755465536206663 1.1271804930195914 0.9593808491590917 0.9193551972334693 0.8727878770531707 1.0 18.431619373365507 2.000595649883327 24.999886327107994 0.926157359460806 0.9937637548082965 0.10737417765324364 0.07343085494278391 38.609131196922725 1620395.0620384617 0.027344642737908622 0.020016424904957676 100.13724755256399 -2.000595649883327 0.06760639534749047 SNDS(ph)GEEAEKEFIFV ddPTM_BT-474_Trastuzumab_2h_R1 3 SNDSGEEAEKEFIFV 15 1 Q5VZK9;Q5VZK9-2 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 SNDS(1)GEEAEKEFIFV;SNDS(1)GEEAEKEFIFV;S(0.001)NDS(0.999)GEEAEKEFIFV 161.86 4.2833e-06 897320000.0 2248710.0 1852130.0 1707110.0 1613540.0 1669220.0 2437020.0 2332160.0 2132970.0 3020450.0 2261580.0 True False 2236603.1952151665 1913777.0274137724 1947456.2495338812 1817813.998560015 1881785.2727579214 2268554.543528015 2219344.5110836313 2292143.0524021983 2276100.569456416 2117244.028163951 1.0563747803576153 0.9039000710151381 0.9198071755680862 0.8585755701181039 0.8887899777853115 1.0714657891822128 1.0482232947933832 1.0826069276435357 1.0750298686307898 1.0 21.0137561296156 2.733114299829101 24.675632414705536 1.0617127790774903 0.9202569729341556 0.5969629176870597 0.05318838571280081 243.00104497726335 1100961.926949106 0.016994562793502498 0.016451020209678948 540.8966601464348 -2.733114299829101 -0.14145580614333464 SNEDQSMGNWQIKR ddPTM_BT-474_Trastuzumab_2h_R1 4 SNEDQSMGNWQIKR 14 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;; 234.93 5.1011000000000007e-17 2507460000.0 779450.0 976510.0 934260.0 968150.0 1039530.0 1266420.0 1150400.0 902850.0 1344900.0 1166830.0 False True 775253.5278050359 1009012.5450372392 1065795.6872665046 1090717.6907333438 1171907.983722963 1178875.3662320161 1094750.7570452325 970225.2515794043 1013467.415736706 1092361.910426577 0.7097039180927615 0.923698030301341 0.975680016937154 0.9984948031622677 1.0728202553907453 1.0791985284177976 1.0021868637086793 0.8881902987632759 0.9277762306275746 1.0 20.059019484075776 4.797788955960767 1.9452339057532106 0.990978970767407 0.595366519161164 0.7118050468842021 0.05425931062459453 0.5992716094788961 2.120183456867285 0.016614472137748887 0.44748568926368404 62775.32299709763 -4.797788955960767 -0.39561245160624303 SNEEGSEEKGPEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SNEEGSEEKGPEVR 14 1 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 ;;; 228.9 1.356e-12 4343860000.0 5244680.0 4510670.0 3965430.0 3798850.0 3649490.0 5556490.0 5156160.0 4726940.0 7064830.0 5296650.0 False True 5216443.225618725 4660804.924192402 4523728.0758645525 4279784.020495135 4114230.919278059 5172382.92487053 4906736.842356001 5079688.265714964 5323797.310371881 4958613.262309793 1.0519963848095768 0.9399412048564021 0.9122970146208448 0.8631009909616445 0.8297140151159099 1.0431107753826239 0.9895381193875105 1.0244171095829264 1.0736464065140623 1.0 22.24150527878422 2.7122535710412654 24.954288235593804 1.024304853516713 0.9170271037498271 0.4562793938068507 0.05820950116341374 714.0356695694211 677317.7459477807 0.019807775829018347 0.01868036712698104 515.5295584020897 -2.7122535710412654 -0.10727774976688587 SNEHDHS(ph)KSKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNEHDHSKSKEK 12 2 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 SNEHDHS(0.5)KS(0.5)KEK 69.594 0.023532 54588000.0 70834.0 51459.0 42858.0 56504.0 55280.0 44153.0 81408.0 17754.0 169010.0 59761.0 True False 70452.6376143972 53171.78170737761 48892.03387158597 63657.40060651436 62319.58032976958 41100.80703498226 77469.9840312398 19078.893632985284 127359.75011797188 55947.00181603384 1.2592745871541269 0.9503955526020542 0.8738990881469186 1.1378161213327218 1.1139038430457846 0.7346382415653092 1.3847030496107424 0.34101726658599013 2.276435662035278 1.0 15.77177319920442 1.2394429317033282 24.999938486817545 1.6382175429016776 0.9620680613026895 0.308021343569985 0.39760254227358377 24.704122055590467 700160.3659883908 0.27843472996851015 0.08817106320202618 17.35573185570388 -1.2394429317033282 -0.6761494815989881 SNETQNPHKPS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SNETQNPHKPSPSR 14 1 A0A5S6SZ32;Q96LW4-2;Q96LW4 A0A5S6SZ32 PRIMPOL DNA-directed primase/polymerase protein 1 SNETQNPHKPS(0.975)PS(0.025)R;SNETQNPHKPS(1)PSR;SNETQNPHKPS(0.982)PS(0.018)R 212.76 1.1962e-09 217790000.0 189724.0 166744.0 165229.0 146357.0 163323.0 215020.0 217069.0 172280.0 250382.0 217821.0 True False 188702.54706431783 172293.97324112325 188491.80700378638 164885.78119367882 184121.2159587367 200156.1735026359 206568.54318589336 185136.40842011393 188678.7110469087 203919.47729405967 0.9253777499252881 0.8449118030675842 0.9243443024913898 0.8085827964138376 0.9029113765980621 0.9815451479115115 1.0129907448125401 0.9078897753015528 0.9252608605642255 1.0 17.63764005486016 2.917992477210762 5.288647852040858 0.9589021208270478 0.8746603836621475 0.484683037999877 0.043834441362844576 0.20248911178483092 9.640136733506642 0.013424808980669738 0.014414574969957935 827.9278223363445 -2.917992477210762 -0.08424173716490035 SNFAEALAAHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNFAEALAAHK 11 0 P07237;H7BZ94;I3L312;I3L3U6;I3L0S0;I3NI03;I3L514;I3L3P5;I3L1Y5 P07237 P4HB Protein disulfide-isomerase 0 ; 132.79 0.00017517 5152800000.0 4538900.0 5165200.0 4963300.0 4198200.0 3676600.0 4817200.0 5385100.0 4612000.0 6931100.0 4464200.0 False True 4514463.0667191995 5337120.559570661 5662089.498223025 4729691.689548861 4144793.2170844963 4484198.30246907 5124602.139920274 4956170.859261474 5223023.276981689 4179290.9340060973 1.080198325028265 1.2770397284724841 1.3547966838469363 1.1316971620865772 0.9917455574482983 1.0729567223908725 1.2261893753847952 1.1858879741857768 1.2497390967647024 1.0 21.994826762164475 -2.395902297137401 1.904512420338695 5.1881130280212955e-05 1.176194234324738 0.20530106372735035 0.10292985027549464 1445477.965297476 135795.11390850847 6219576.883531251 0.03006107609694568 0.004018812115564329 2.395902297137401 1.1761423531944577 SNFS(ph)NSADDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNFSNSADDIK 11 0 P45973 P45973 CBX5 Chromobox protein homolog 5 1 SNFS(0.859)NS(0.141)ADDIK;SNFS(1)NSADDIK 223.03 7.5959e-12 370220000.0 729660.0 581240.0 518550.0 560050.0 548470.0 765400.0 707110.0 770910.0 1262250.0 769610.0 True False 725731.5916328464 600586.2220330008 591557.3326826006 630952.2725767803 618314.4034636167 712489.6995577974 672904.3878774811 828439.2188016609 951185.4007834446 720492.8309037292 1.0072710796060886 0.83357695770501 0.8210454112924315 0.8757231793484519 0.8581825896699792 0.9888921429851102 0.9339501505288305 1.1498229868054792 1.3201871829735667 1.0 19.458624549706933 1.7737079962544158 2.7073005841393014 1.1848270298004686 0.891024001781662 0.612921368946502 0.09234718589051057 0.14978469408115355 2.1717555899324954 0.05278238490331423 0.024771948122035158 59.389271257812375 -1.7737079962544158 -0.29380302801880664 SNFSSGPGFPEYGYPADTVWPAMEQVS(ph)SRPTSPEKFSVPHVCAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCAR 44 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 SNFSSGPGFPEYGYPADT(0.003)VWPAMEQVS(0.232)S(0.232)RPT(0.232)S(0.232)PEKFS(0.069)VPHVCAR;SNFSSGPGFPEYGYPADT(0.004)VWPAMEQVS(0.235)S(0.235)RPT(0.235)S(0.235)PEKFS(0.057)VPHVCAR 147.96 3.2942e-14 1620690000.0 386750.0 477970.0 446640.0 517110.0 494610.0 566200.0 666170.0 527450.0 890200.0 572740.0 True False 384667.7809719649 493878.9425110331 509523.02973552584 582576.0729795165 557595.6517168481 527059.9266914355 633944.812083469 566810.9973368311 670822.1380688631 536187.2428526168 0.7174131538927708 0.9210941683049085 0.950270705854111 1.0865161018753493 1.0399271134283885 0.9829773716498321 1.1823198342257522 1.0571139184910296 1.2510967894349059 1.0 19.032377369079537 5.517904213537106 0.5794115271894132 1.1054047559242828 2.640319943952808e-12 0.6963585966238065 0.07673345062718616 4.454434875139372 0.5814851246779298 0.03366003875183635 4.025965699522222 329537.02263541793 -5.517904213537106 -1.1054047559216424 SNGELSES(ph)PGAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNGELSESPGAGK 13 0 Q12830-4;Q12830;F5GXF5;E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-2;A0A0A0MR81;F5H176 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 1 SNGELSES(1)PGAGK 183.17 3.9932e-07 0.0 198160.0 172180.0 149630.0 134030.0 147600.0 244760.0 221510.0 182960.0 285140.0 223740.0 True False 197093.12857764572 177910.90721499195 170696.60339272497 150998.18425759458 166395.98510625897 227840.31730306585 210794.7150496256 196613.40425205498 214871.06768024692 209460.7216465486 0.9409550727616971 0.8493759871371258 0.8149337119193375 0.7208902130700868 0.7944018515654759 1.087747218247112 1.0063687043212237 0.938664789782532 1.0258298834796717 1.0 17.67632020762868 2.7506617914557814 24.991878471657433 1.0017803794027031 0.819270570320659 0.6968961220478009 0.06164892255436187 472.09060777322003 974981.5400139525 0.020401886881453873 0.021492281901150215 563.1988916406941 -2.7506617914557814 -0.18250980908204417 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR 35 0 P78406;E9PQ57 P78406 RAE1 mRNA export factor 0 ; 265.79 1.4583999999999996e-60 910070000.0 137540.0 189089.0 199887.0 227600.0 191865.0 205960.0 244270.0 115276.0 220910.0 207776.0 False True 136799.49992213058 195382.71305828594 228029.35215104988 256414.136663646 216297.8704770484 191722.4699776901 232453.72689798253 123878.48047966711 166469.69054234182 194515.5577940168 0.7032830765495637 1.0044580252299788 1.1722936444627359 1.3182191675134645 1.1119823675291727 0.9856407999030883 1.1950392530768184 0.6368564133612842 0.8558168427773049 1.0 17.5695260242737 1.7450063261805535 24.999999999999297 0.8030687008059822 1.0794367985945674 0.2775990649065784 0.17468959799992895 1.5295299511925977 5951.600758051099 0.0823847552246603 0.045686651506557395 55.59123549471232 -1.7450063261805535 0.2763680977885852 SNGVTPGTQSS(ph)PAPSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SNGVTPGTQSSPAPSTR 17 0 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 SNGVTPGT(0.005)QS(0.083)S(0.912)PAPSTR 126.83 4.4378e-05 409110000.0 226730.0 288550.0 292120.0 319230.0 303400.0 278830.0 263180.0 227290.0 239530.0 255010.0 True False 225509.31087207116 298154.2123178416 333247.9568474425 359644.48526861076 342036.19160731003 259555.13839521914 250448.9779547673 244251.53395523428 180501.0410375587 238735.04347495508 0.944600790858459 1.2488916917181452 1.395890406355037 1.5064587085068637 1.432702072677453 1.0872100493384342 1.0490666737036496 1.023107166840623 0.7560726670464467 1.0 17.865050826934272 2.4524869984814592 2.563723449718299 0.9632922888093765 1.3171030862111197 0.5095084316483021 0.1607775987638155 0.25069786901389757 3.3565966521205084 0.06570171874271702 0.05463606716716764 283.4568773442739 -2.4524869984814592 0.35381079740174326 SNIHCNTIAPNAGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNIHCNTIAPNAGSR 15 0 P51659-3;P51659;P51659-2;A0A2R8YD50;A0A2R8Y7L2;E7ET17;E7ER27;A0A2R8Y7W2 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 ; 141.86 4.6889e-06 826950000.0 627380.0 792470.0 755570.0 713340.0 745610.0 775790.0 798050.0 707340.0 868180.0 705320.0 False True 624002.2557884705 818846.8848917687 861947.6884678288 803648.7708596019 840559.0139232909 722161.4633132267 759445.2726529456 760125.3025997418 654228.6720159812 660305.8737451683 0.9450199984580048 1.2401023789889625 1.3053763759195032 1.2170856004981623 1.2729843052216852 1.093677176029378 1.1501416280692334 1.1511714991847806 0.9907963839626049 1.0 19.332774953925732 1.3097911094707901 2.564577629752584 0.9864082034862054 1.1845226945523695 0.3414932159425892 0.09708555339797378 0.30274359990504945 3.2923073970065913 0.08608261128002272 0.025568235350165034 20.407561289124555 -1.3097911094707901 0.19811449106616408 SNKPIILR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNKPIILR 8 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ; 92.062 0.010984 1591420000.0 1768890.0 1938650.0 1774730.0 1797710.0 1686420.0 2266320.0 2160420.0 1853410.0 2355940.0 2021680.0 False True 1759366.4927821553 2003176.7933113298 2024596.557770308 2025299.901676639 1901175.5908055345 2109654.6327434406 2055912.2309941435 1991720.86562528 1775350.1549786113 1892654.6515526697 0.9295760805273326 1.0583953029508006 1.0697126156160595 1.0700842332832097 1.0045021099046647 1.114653764759858 1.0862585148894135 1.0523424672278905 0.938021182851385 1.0 20.851979759052924 4.741039086093557 24.361425863214624 1.05003256758851 0.9295760204769445 0.3265791774722344 0.04845172278150322 173.02453846507333 1700548.0093000976 0.011247063790318536 0.07530086573354972 55085.72708091112 -4.741039086093557 -0.1204565471115655 SNLDEEVNVIPPHT(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNLDEEVNVIPPHTPVR 17 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 SNLDEEVNVIPPHT(1)PVR;SNLDEEVNVIPPHT(1)PVR 102.94 0.0033973 367980000.0 151024.0 112027.0 115355.0 114344.0 102506.0 141520.0 124002.0 108775.0 153847.0 131035.0 True False 150210.90356434367 115755.75097324833 131595.98131636568 128819.9386760456 115559.53149933719 131737.05550224645 118003.54952635868 116892.3428482581 115933.46829418153 122672.23411529254 1.2244898338051717 0.9436181855500911 1.072744637492183 1.050114882190661 0.9420186428717803 1.07389464659488 0.961941798626199 0.9528834596620922 0.9450669023050674 1.0 16.904449217836955 4.746335327912111 24.725014557131992 0.9938454000516357 1.2244899643851102 0.647513519852722 0.05110866697216981 520.4356759420625 1655036.0239705422 0.012334885633100378 0.13192544855307023 55761.61299101078 -4.746335327912111 0.23064456433347447 SNMS(ph)PHGLPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SNMSPHGLPAR 11 0 E7ESY4;Q13330-3;Q13330;H0Y4T7 E7ESY4 MTA1 Metastasis-associated protein MTA1 1 SNMS(1)PHGLPAR;S(0.042)NMS(0.958)PHGLPAR;S(0.001)NMS(0.999)PHGLPAR;S(0.002)NMS(0.998)PHGLPAR 130.47 0.00014398 1285726000.0 844480.0 960940.0 906341.0 962810.0 913430.0 1036510.0 1018370.0 834338.0 1094850.0 945320.0 True False 839933.4135105484 992924.3069995021 1033945.9347428035 1084701.6472808674 1029749.8961762202 964858.5033820926 969107.5525488132 896600.5382425179 825038.8877383686 884988.8682708305 0.949089241259819 1.1219624817875569 1.1683151865661525 1.2256669955637447 1.1635738404125202 1.0902493104431001 1.0950505563333708 1.0131206960765227 0.932259056942041 1.0 19.755299782975417 1.726160974726208 1.864080440355296 0.9643400861057653 1.128978024015534 0.4475576194012365 0.06963225947842554 0.293054409126875 2.059510879013532 0.05257129320636324 0.021154852823111626 53.23055260095633 -1.726160974726208 0.16463793790976877 SNMTS(ph)PTLLDANPMENPALFNDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNMTSPTLLDANPMENPALFNDIK 24 0 Q05BZ3;O95600-4;O95600-3;O95600-5;O95600 Q05BZ3 KLF8 Krueppel-like factor 8 1 S(0.044)NMT(0.133)S(0.411)PT(0.411)LLDANPMENPALFNDIK;S(0.148)NMT(0.147)S(0.557)PT(0.147)LLDANPMENPALFNDIK 113.65 0.00089442 53248000.0 39074.0 45986.0 37813.0 38770.0 38751.0 52336.0 51817.0 45450.0 65222.0 50205.0 True False 38863.6299255295 47516.61621087598 43136.74172351206 43678.27802482234 43685.7101548282 48718.13550569231 49310.413749837266 48841.70979042361 49148.91203002407 47000.87391733702 0.8268703682804084 1.0109730362555818 0.9177859500948637 0.92930778482208 0.9294659123075163 1.0365368012385372 1.0491382316967586 1.0391659924520589 1.0457020887838153 1.0 15.520399961541571 2.738829396038672 6.974189697765624 1.0381424067333649 0.927660932744131 0.6200799107739394 0.04339799694063511 0.08565562210909035 28.53719444024764 0.012735406501022128 0.012741702844370149 548.0616275032571 -2.738829396038672 -0.11048147398923391 SNNHENVSLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNNHENVSLAK 11 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 ; 95.417 0.0036856 268790000.0 616900.0 756620.0 720300.0 688450.0 649380.0 806140.0 837080.0 725150.0 993440.0 796120.0 False True 613578.6789440338 781803.639313551 821711.979040164 775607.6994116313 732074.6938231876 750413.439249442 796587.2424438664 779264.3752370881 748620.0234139882 745310.9400073767 0.8232519422537403 1.0489630533342407 1.1025089461749094 1.0406498251641856 0.9822406388076659 1.0068461349058082 1.068798537206474 1.0455560671488 1.004439869628881 1.0 19.507482910774765 4.740554096548377 24.961600119415913 1.0367453772548267 0.823251868164799 0.769706703659197 0.034428182936747605 82.47754327706201 1032677.186233382 0.008606728854829796 0.0561958350039421 55024.24554911517 -4.740554096548377 -0.21349350909002773 SNNIAELS(ph)PGAINSCR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNNIAELSPGAINSCR 16 0 Q9Y2I9;F8VZ81;Q9Y2I9-2;Q9Y2I9-3 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 SNNIAELS(1)PGAINSCR;SNNIAELS(1)PGAINSCR 220.33 1.2157e-14 420530000.0 460830.0 538600.0 482680.0 535290.0 474980.0 476390.0 425950.0 408510.0 451910.0 386010.0 True False 458348.9424830264 556526.9754094244 550637.1484702303 603057.6591154798 535465.8875729732 443458.280601436 405345.17121298425 438995.0905717481 340542.8357837568 361374.51132021256 1.2683488406764947 1.5400283029820219 1.5237299013109225 1.6687885842095618 1.4817478012401901 1.2271432176590045 1.121676151790931 1.214792623220613 0.9423543308011646 1.0 18.463135227211755 2.607653066508728 2.483986055973223 1.1019746970319988 1.513753937601482 0.7507741604265619 0.11600656062715001 0.1537201932911903 1.8627583476576832 0.04294087011148247 0.03938911143057777 405.1847267879228 -2.607653066508728 0.4117792405694831 SNNVEMDWVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNNVEMDWVLK 11 0 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIT2;D6RIU0;D6R9T0;D6RFM3;E5RGV0;D6RDU3;D6RJ04;D6RIH9;D6RAM1;E5RGH4;H0YAQ2;E7EQJ0 P31943;E7EQJ0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 87.184 0.032369 217870000.0 233170.0 279190.0 261030.0 251770.0 251400.0 288570.0 309660.0 225310.0 311720.0 277210.0 False True 231914.63862762245 288482.6703760811 297780.7550865673 283644.05618544004 283414.29983545706 268621.8351207127 294680.56278392434 242123.77630099803 234900.78283399917 259518.22046857857 0.8936352839075581 1.1116085408385012 1.1474367947996216 1.0929639378433644 1.0920786190801264 1.035078903653458 1.1354908424227697 0.9329740927778649 0.9051417754401565 1.0 17.98547630649536 1.6719268217675618 6.998681943393796 0.9390959413620287 1.076809237107973 0.3965236734582819 0.07107414330980584 0.11715261511428453 11.169324897107845 0.034885204116899826 0.017857862770076557 46.981493853769344 -1.6719268217675618 0.13771329574594426 SNNWS(ph)LEDVTASDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNNWSLEDVTASDK 14 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 SNNWS(1)LEDVTASDK;SNNWS(1)LEDVTASDK 237.3 2.8626999999999994e-17 256590000.0 332100.0 236408.0 209541.0 181203.0 194701.0 333290.0 339400.0 275110.0 417370.0 348400.0 True False 330312.0104997787 244276.6973683463 239042.5514369779 204143.28122083782 219495.0182667595 310250.4467802696 322981.9253660921 295640.10518027365 314514.75597146864 326164.81371975306 1.012715034257463 0.7489363876577853 0.7328888383477433 0.6258899569597399 0.6729573793185237 0.9512075911623092 0.9902414723484069 0.9064132387814622 0.9642816844176995 1.0 18.31524162862011 2.723554949279996 23.794962148208537 0.9548793262613791 0.749326559562037 0.5165762173638417 0.09820890819419835 361.12879995834055 572651.9539573886 0.0328635468166889 0.03111465454669699 529.1209402093968 -2.723554949279996 -0.20555276669934208 SNPKS(ph)PQKPIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNPKSPQKPIVR 12 2 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y467;A0A2R8YES9;H7C5K3 P15056 BRAF Serine/threonine-protein kinase B-raf 1 S(0.01)NPKS(0.99)PQKPIVR;S(0.012)NPKS(0.988)PQKPIVR 90.853 0.004501399999999999 3581300000.0 5427700.0 4615800.0 4363900.0 4166900.0 3960700.0 6053700.0 6222500.0 5305200.0 8782600.0 5781800.0 True False 5398477.866274159 4769434.112689979 4978299.188301226 4694429.112758116 4465071.668091869 5635221.967876976 5921493.902741623 5701100.963259746 6618245.91081061 5412800.573951974 0.9973539191991038 0.8811398180161916 0.9197270655524057 0.8672828508312541 0.8249096945450269 1.0410917400126214 1.093979691629068 1.0532627029887562 1.2227027063697122 1.0 22.3679438045464 2.574395935156299 4.798898477212699 1.0898268630719328 0.8972974575801346 0.6617619962215748 0.06652240841675316 0.13378778949397352 5.017029491402739 0.021467921352568566 0.01998607734879017 375.31501140488683 -2.574395935156299 -0.1925294054917982 SNQWHGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SNQWHGR 7 0 Q9BTL3;A0A3B3IU46 Q9BTL3 FAM103A1 RNMT-activating mini protein 0 ;;; 95.352 0.013529 260673000.0 437513.0 579040.0 555620.0 556290.0 512610.0 469559.0 549560.0 443625.0 567383.0 529840.0 False True 435157.4786202644 598312.9963629277 633846.4664643846 626716.2569623013 577887.8450224891 437099.4915529915 522975.68327692815 476730.5501821048 427559.06219268235 496025.1575811543 0.8772891293302368 1.2062150219972223 1.277851449219451 1.263476755934027 1.1650373699602954 0.8812042794048767 1.0543329814705305 0.9611015548220602 0.8619705183455937 1.0 18.920053768027092 2.7546531299006367 22.899818608476455 0.9588934222364826 1.1731751983795893 0.43908974867524453 0.11578035385815043 253.21772487623886 360330.37237097585 0.03582964296706174 0.03785876622545864 568.3987705837616 -2.7546531299006367 0.21428177614310673 SNRNS(ph)IER ddPTM_BT-474_Trastuzumab_2h_R1 4 SNRNSIER 8 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 SNRNS(1)IER;SNRNS(1)IER;S(0.042)NRNS(0.958)IER;S(0.002)NRNS(0.998)IER 117.86 0.0012099 562414000.0 371640.0 398855.0 372216.0 403170.0 391654.0 396105.0 436887.0 398191.0 475348.0 435092.0 True False 369639.1315330853 412130.6475620611 424620.7774405307 454211.2806620491 441528.815384869 368723.19368087436 415753.10673958657 427906.03439292806 358204.85473686573 407324.0560589981 0.9074817115136102 1.0118004115680483 1.042464276598059 1.1151103744195743 1.083974316805184 0.9052330403669243 1.0206937217559464 1.050529739227945 0.8794100161984595 1.0 18.635817495093303 2.763776917110957 24.756797814048586 0.9847202200642571 1.0362148981525692 0.1449145288275867 0.06998551935424684 1646.8987515514837 1616885.6646297106 0.022382748698615604 0.02373167601377049 580.4661744162381 -2.763776917110957 0.051494678088312096 SNS(ph)APLIHGLSDTSPVFQAEAPSAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 S(0.126)NS(0.874)APLIHGLSDTSPVFQAEAPSAR;S(0.132)NS(0.868)APLIHGLSDTSPVFQAEAPSAR;S(0.027)NS(0.973)APLIHGLSDTSPVFQAEAPSAR;S(0.054)NS(0.946)APLIHGLSDTSPVFQAEAPSAR 265.72 1.4434e-45 10655800000.0 690551.0 745360.0 702662.0 757017.0 648242.0 712270.0 745126.0 690772.0 796330.0 759472.0 True False 686833.1501434295 770168.8570203643 801590.7019524088 852855.2745812975 730791.7762686416 663032.4514032304 709081.4087222588 742320.9143091423 600085.1417753075 711001.8467433079 0.9660075473635106 1.0832163946522313 1.1274101545924762 1.1995120385238645 1.0278338651523622 0.9325326712443888 0.9972989690113386 1.0440492070580254 0.8439994136779725 1.0 19.439493781516315 3.0052493323125624 24.9408837210579 0.9760039328758296 1.0979006924679697 0.4077386447204733 0.07333586922299495 148.8103590168128 707026.5532064011 0.02164732973978573 0.025794509494970926 1012.1603777340642 -3.0052493323125624 0.12189675959214008 SNS(ph)DESNFSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSDESNFSEK 11 0 A0A087WWW9;O95999 A0A087WWW9 BCL10 B-cell lymphoma/leukemia 10 1 SNS(1)DESNFSEK;S(0.008)NS(0.992)DESNFSEK 215.61 1.3315e-11 544200000.0 691880.0 542990.0 454810.0 494330.0 541300.0 696610.0 614270.0 592070.0 928520.0 664560.0 True False 688154.9949550941 561063.0939056136 518843.29472061276 556912.1273152031 610231.3464635364 648454.9903435552 584555.413360722 636253.2698705412 699698.6875305558 622147.2118415596 1.1060967273616014 0.9018172600096742 0.8339558304614648 0.8951452593779851 0.9808471931542501 1.0422854559198689 0.9395773254860925 1.0226731837103755 1.1246513272308065 1.0 19.246896464221972 3.033136775548881 4.965306590896577 1.0191866936174703 0.92527962507894 0.22878062699037327 0.07804543010563035 0.2866187699360726 17.579152897015422 0.023669252156193116 0.027912514314835518 1079.286576354032 -3.033136775548881 -0.09390706853853026 SNS(ph)DNNLNASAPDWAVCSTATSHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SNSDNNLNASAPDWAVCSTATSHR 24 0 Q9UPX8;Q9UPX8-3;A0A2R8Y2H5;A0A087X158 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 S(0.274)NS(0.726)DNNLNASAPDWAVCSTATSHR 235.95 1.3753e-37 1301600000.0 98243.0 91502.0 103620.0 114070.0 72994.0 103300.0 112940.0 115350.0 117100.0 105430.0 True False 97714.07060382345 94547.58875587297 118208.79531881429 128511.25030413944 82289.35323066574 96159.11414204408 107476.66072730217 123958.0027354315 88242.27405960899 98701.36713683567 0.989997134166911 0.9579156955829795 1.1976409116495244 1.30202097531209 0.8337205007158922 0.9742429809379731 1.0889075181532266 1.2558894200885893 0.8940329462435245 1.0 16.59078244749225 1.1848593581231417 24.999871579867733 0.9470161789233112 1.0807436737076799 0.1176802713800702 0.13952441751325992 242.47486252461132 112874.48779462211 0.14016568920374975 0.03504152201262494 15.305917147638755 -1.1848593581231417 0.13372749478436863 SNS(ph)EDKLNSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SNSEDKLNSK 10 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 S(0.026)NS(0.974)EDKLNSK;SNS(1)EDKLNSK;SNS(0.988)EDKLNS(0.011)K;S(0.02)NS(0.98)EDKLNSK;SNS(1)EDKLNSK;SNS(1)EDKLNSK 215.25 2.1772e-08 16676640000.0 10033180.0 6538940.0 5765380.0 5182300.0 5510960.0 7961170.0 8193950.0 7722800.0 13847570.0 7698940.0 True False 9979162.473671097 6756584.6650273 6577095.390418699 5838378.648646816 6212748.089980947 7410833.056478384 7797577.334571265 8299114.551583807 10435021.921431435 7207587.057805847 1.384535822271286 0.9374267158812727 0.9125238915145224 0.8100323453358537 0.8619733678072629 1.0281988961135642 1.081856836696333 1.1514414581501073 1.4477829872523373 1.0 22.78108492693492 1.901055836106868 1.9151898919272643 1.2282606981085578 0.9688902643730559 0.2147575374924522 0.1789028172217941 0.4576821301947592 3.1239414571617585 0.11285394124628759 0.05313472589893753 79.62617171252653 -1.901055836106868 -0.25937043373550184 SNS(ph)EGDLDGLILK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSEGDLDGLILK 13 0 F5H1B1;F5H630;P51523 F5H1B1 ZNF84 Zinc finger protein 84 1 S(0.149)NS(0.851)EGDLDGLILK;S(0.108)NS(0.892)EGDLDGLILK 121.27 0.00026082 24236000.0 108853.0 75392.0 80220.0 69621.0 83856.0 112354.0 87583.0 86347.0 145726.0 107786.0 True False 108266.94754270535 77901.37714457366 91514.27871526031 78435.01146159803 94534.56454654777 104587.23243286755 83346.275690449 92790.65160118161 109813.77992835693 100907.00519976282 1.072937873127562 0.7720115862159862 0.9069170027798568 0.7772999635290176 0.9368483819275014 1.03647147416395 0.8259711555748847 0.9195660045354286 1.0882671595590576 1.0 16.62266680761395 1.3195011140210726 6.379049845134207 1.0428460388948084 0.8987027571871014 0.25005412103447455 0.0954058484160758 0.2467343921812258 14.866447995365567 0.063065439367975 0.022512237534671072 20.868974770672786 -1.3195011140210726 -0.14414328170770707 SNS(ph)ELEDEILCLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSELEDEILCLEK 14 0 Q96PC5;Q96PC5-11;Q96PC5-10;Q96PC5-9;Q96PC5-13;Q96PC5-6;G3V599;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5-8;Q96PC5-5;Q86UF2;A4D2H0;A0A5F9ZHA4;G3V5K6;A0A2R8YE69;Q8IX94;P0CG41;A4FU28 Q96PC5 MIA2;CTAGE6;CTAGE15;CTAGE5;CTAGE4;CTAGE8;CTAGE9 Melanoma inhibitory activity protein 2;cTAGE family member 6;cTAGE family member 15;cTAGE family member 4;cTAGE family member 8;cTAGE family member 9 1 SNS(1)ELEDEILCLEK;S(0.003)NS(0.997)ELEDEILCLEK 281.61 2.6019e-33 83779000.0 139957.0 150634.0 124585.0 115698.0 139812.0 153905.0 126904.0 142111.0 203295.0 132265.0 True False 139203.4870626844 155647.761629824 142125.4850877673 130345.35493721678 157616.22946935156 143265.90960340077 120765.16869964215 152716.04444503604 153195.6712634348 123823.73446223643 1.1242068224419324 1.2570107201644223 1.1478048671768377 1.0526685817004597 1.2729080588134023 1.157014931148711 0.9752990347458218 1.2333341835333769 1.2372076478613734 1.0 16.91792835045145 -1.5431482606710794 3.715807864483661 0.9967640231736455 1.1612793253569331 0.2265998936390835 0.08974495279738695 0.002389376237312291 0.000293769574873927 0.08629988272977165 0.01995627572814911 0.028632003556595547 1.5431482606710794 0.16451530218328758 SNS(ph)FIGVPNGEVEMPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSFIGVPNGEVEMPLK 17 0 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 S(0.047)NS(0.953)FIGVPNGEVEMPLK;S(0.012)NS(0.988)FIGVPNGEVEMPLK 267.56 8.862e-28 145257000.0 344830.0 225716.0 180678.0 242567.0 199006.0 266080.0 230210.0 267040.0 378720.0 286190.0 True False 342973.47359421494 233228.82061179684 206115.89191867123 273275.9573290452 224348.23449902548 247686.51588494764 219073.86281239812 286967.88080164435 285389.5305880026 267925.109180414 1.2801094852340444 0.8705000487832084 0.7693041258774966 1.0199714321849098 0.8373542710696631 0.9244617521762837 0.8176682785818306 1.0710749794204897 1.0651839667473215 1.0 18.031470267235484 1.6478214709909922 9.533399732779426 1.0509103816935614 0.9226403773818387 0.12551278901132068 0.13606111382817587 0.20674120970949775 33.80689280459884 0.06400757763455643 0.03394144956849165 44.444852679546706 -1.6478214709909922 -0.12827000431172275 SNS(ph)FNNPLGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSFNNPLGNR 11 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 SNS(1)FNNPLGNR;SNS(1)FNNPLGNR 191.95 1.6853e-06 883570000.0 810430.0 834340.0 696140.0 746660.0 743630.0 874720.0 876120.0 831910.0 1107590.0 872100.0 True False 806066.7349272384 862110.5025308188 794150.4610426493 841187.0794432261 838326.87265967 814252.665269397 833738.7284965835 893991.3485533849 834639.2854456223 816441.8313576257 0.9872923017514488 1.0559362215643124 0.9726969277432674 1.0303086480079697 1.0268053895103006 0.9973186502649081 1.021185706653707 1.0949847425955692 1.0222887331210564 1.0 19.63899057687864 1.9764796211509295 24.64383898287442 1.0517550756876524 1.0131385783335034 0.08900876062739849 0.032066674025987625 881.789219660487 923906.9070735706 0.012300267668811133 0.007993436138514595 94.72827331340838 -1.9764796211509295 -0.03861649735414896 SNS(ph)FSDER ddPTM_BT-474_Trastuzumab_2h_R1 8 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 S(0.032)NS(0.931)FS(0.037)DER;S(0.012)NS(0.633)FS(0.356)DER;S(0.019)NS(0.76)FS(0.221)DER;S(0.052)NS(0.948)FSDER;S(0.036)NS(0.932)FS(0.032)DER;S(0.354)NS(0.646)FS(0.001)DER;S(0.001)NS(0.967)FS(0.032)DER;SNS(0.999)FS(0.001)DER 185.99 0.00022011 10106154000.0 10012130.0 9305260.0 8405340.0 7818250.0 7878240.0 10375970.0 10511530.0 9723020.0 11762150.0 10709120.0 True False 9958225.804532219 9614979.953951553 9588738.811475016 8808039.64837677 8881487.166013105 9658703.616306134 10003047.135955902 10448601.124895157 8863525.737235101 10025654.793061102 0.9932743556485156 0.9590376042676252 0.956420204903875 0.8785500628320995 0.8858760200042104 0.9633987819918814 0.9977450193955564 1.0421864048348026 0.8840844733023995 1.0 23.25719312890694 2.4811620564400063 7.742645582783587 0.9899948361889087 0.933117926857727 0.15716257426337987 0.04913812919978046 0.19672136493108752 94.34426761773656 0.017316322293973622 0.015204854400660738 302.8043127802021 -2.4811620564400063 -0.056876909331181724 SNS(ph)LNNGQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSLNNGQPK 10 0 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 S(0.001)NS(0.999)LNNGQPK;S(0.01)NS(0.99)LNNGQPK 144.92 0.0052259 182410000.0 586500.0 405040.0 407200.0 393740.0 381930.0 512380.0 502290.0 535390.0 756860.0 574280.0 True False 583342.3491662754 418521.51154814963 464530.22055415076 443587.44362892845 430566.5216235335 476960.3766127835 477992.31376586336 575343.5204553339 570341.9944044035 537628.9587341556 1.0850277681093512 0.7784579025161817 0.8640349687410525 0.8250810087934114 0.800861848359694 0.8871552933751635 0.8890747159366073 1.0701497958926487 1.060846863136373 1.0 19.03625132367134 1.7980203392732481 4.57389841319892 1.0492515013245127 0.8652980991029309 0.47304776952507743 0.08085189740260192 0.1634118022153418 6.199611177946312 0.03811247282973281 0.020766714390963826 62.808777330104526 -1.7980203392732481 -0.18395340222158185 SNS(ph)LPHSAVSNAGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSLPHSAVSNAGSK 15 0 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 S(0.192)NS(0.808)LPHSAVSNAGSK;S(0.031)NS(0.691)LPHS(0.246)AVS(0.031)NAGSK 252.91 7.5666e-25 2320650000.0 2224330.0 1868550.0 1900600.0 1928740.0 2015950.0 2571410.0 2382290.0 2383790.0 3091990.0 2500930.0 True False 2212354.4544262933 1930743.5571876704 2168187.9596886514 2172918.286241832 2272669.283028203 2393654.479148048 2267049.5314684333 2561680.514440349 2330010.4950432996 2341318.5062461016 0.9449181939681587 0.8246394294654438 0.9260542527231653 0.9280746213917431 0.970679246315801 1.0223532051544144 0.9682789955405317 1.0941187658177953 0.9951702379780304 1.0 21.158889777215062 3.160700144069152 1.0812259241935647 1.0301014870170913 0.885859373366812 0.6017919010225926 0.04236180013395397 0.29410820268189736 0.7399396549828536 0.017202825693370085 0.025161264719950324 1447.7719032505217 -3.160700144069152 -0.14424211365027928 SNS(ph)LSEQLAINTSPDAVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 S(0.043)NS(0.944)LS(0.012)EQLAINTSPDAVK;S(0.079)NS(0.921)LS(0.001)EQLAINTSPDAVK;SNS(0.751)LS(0.249)EQLAINTSPDAVK;SNS(0.998)LS(0.002)EQLAINTSPDAVK 426.87 8.359099999999995e-169 3071800000.0 1794020.0 1354140.0 1346300.0 1167240.0 1400530.0 1885300.0 1776910.0 1610080.0 2313230.0 1730260.0 True False 1784361.1956543603 1399211.7313050826 1535847.337750624 1315012.4643201856 1578879.1939083256 1754973.6485188361 1690954.0748446134 1730232.3454205801 1743165.4621939333 1619833.3254498846 1.1015708638780972 0.8637998177475897 0.9481514632525944 0.8118196135734894 0.9747170706404719 1.0834285361004152 1.0439062144711562 1.0681545553089753 1.0761387821859973 1.0 20.62741394236142 2.930265817622073 5.159403283633078 1.057114566160298 0.9238276019430189 0.38828807107529495 0.07289114578728291 0.1995497537907569 10.0507076091419 0.021376234830836678 0.023060140644681128 851.6591517608476 -2.930265817622073 -0.13328696421727915 SNS(ph)LSTPRPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSLSTPRPTR 11 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(0.055)NS(0.925)LS(0.019)T(0.001)PRPTR;S(0.001)NS(0.539)LS(0.123)T(0.123)PRPT(0.215)R 80.312 0.017984 1171090000.0 919970.0 719260.0 666150.0 787160.0 681740.0 772040.0 792110.0 663910.0 991980.0 836960.0 True False 915016.983738275 743200.1342981489 759938.1297204025 886814.375290667 768555.5480104393 718670.6919866763 753792.6131459479 713454.3354666698 747519.820850991 783544.496242494 1.1677919864490918 0.9485104392439518 0.9698723344554185 1.131798359306212 0.9808703292487733 0.9172046966484717 0.9620291084434619 0.9105473127410846 0.9540234465760908 1.0 19.579655679811882 3.008339000593019 24.865345856435745 0.9424450264147388 1.0428106910693862 0.3597769369435935 0.06575437635933842 200.8072485830413 598763.9629849338 0.01850014205224478 0.02207870847200738 1019.386788184689 -3.008339000593019 0.10036566465464736 SNS(ph)PDKFK ddPTM_BT-474_Trastuzumab_2h_R1 6 SNSPDKFK 8 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 S(0.235)NS(0.765)PDKFK;S(0.004)NS(0.996)PDKFK;S(0.174)NS(0.826)PDKFK;S(0.005)NS(0.995)PDKFK;S(0.003)NS(0.997)PDKFK;S(0.003)NS(0.997)PDKFK 101.39 0.005343199999999999 7771740000.0 11136000.0 6997460.0 6162790.0 5566820.0 5398550.0 8396580.0 8628130.0 8323860.0 13637750.0 7699540.0 True False 11076045.013325917 7230366.22604611 7030457.264069051 6271578.84122109 6086023.342787216 7816144.188023275 8210754.389242587 8945028.70090463 10276909.248987464 7208148.765292166 1.5366005022895743 1.0030822700082056 0.97534852470322 0.8700678975188835 0.8443254351369555 1.0843483455361878 1.1390933590019743 1.240960611686552 1.4257348986013767 1.0 22.78119735582725 2.0563877007200193 2.413484872647329 1.2445579853457738 1.0274529339699914 0.11554799334434429 0.20390839739951275 0.5322640360801335 5.967997138547079 0.10455272442269628 0.060812348891772484 113.86433149569406 -2.0563877007200193 -0.2171050513757824 SNS(ph)PLPVPPSK ddPTM_BT-474_Trastuzumab_2h_R1 9 SNSPLPVPPSK 11 0 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 SNS(1)PLPVPPSK;S(0.001)NS(0.999)PLPVPPSK;S(0.016)NS(0.984)PLPVPPSK;S(0.008)NS(0.992)PLPVPPSK;S(0.029)NS(0.971)PLPVPPSK;S(0.009)NS(0.991)PLPVPPSK;S(0.001)NS(0.999)PLPVPPSK;S(0.026)NS(0.974)PLPVPPSK;S(0.003)NS(0.997)PLPVPPSK 145.0 3.8234e-05 31469480000.0 39970780.0 33888570.0 28950640.0 27007020.0 28421850.0 37142600.0 35830770.0 32949780.0 49315400.0 35902200.0 True False 39755581.76165111 35016530.566376835 33026638.46852614 30426105.962907854 32041204.127996795 34575019.48627578 34097498.76826632 35408659.89919263 37162280.4625042 33610890.858580165 1.182818448012137 1.0418209595726273 0.9826171703537314 0.9052454482961346 0.9532982705758106 1.028685006647168 1.0144776855732145 1.053487693860204 1.1056618706974093 1.0 25.002425446078604 -0.21737123693842653 7.807138509949746 1.0000000012137775 1.0242066741960065 0.00950642413565328 0.07347411481324424 0.0 0.0 0.07393759048563114 0.01742725720566125 0.6062179101637122 0.21737123693842653 0.024206672982229005 SNS(ph)SEALLVDR ddPTM_BT-474_Trastuzumab_2h_R1 3 SNSSEALLVDR 11 0 Q96HB5-2;Q96HB5;Q96HB5-5;Q96HB5-3;Q96HB5-4 Q96HB5-2 CCDC120 Coiled-coil domain-containing protein 120 1 S(0.001)NS(0.957)S(0.042)EALLVDR;S(0.002)NS(0.808)S(0.189)EALLVDR;S(0.013)NS(0.934)S(0.053)EALLVDR 177.74 0.00077204 321620000.0 474420.0 540790.0 471890.0 498420.0 477400.0 556300.0 527400.0 462330.0 672130.0 539270.0 True False 471865.7754330176 558789.8682355417 538328.0102585919 561519.9208958456 538194.0602285098 517844.29038934264 501887.6471363485 496831.4122641711 506492.5675805718 504853.3269077249 0.9346591381763111 1.1068360619869206 1.0663057596468712 1.112243677456201 1.0660404350011916 1.0257321538538502 0.9941256606358494 0.9841104055059144 1.0032469641883661 1.0 18.945504782542418 2.489243680905588 2.8549381074158777 0.9930131490060289 1.0632949446962374 0.2814725451364317 0.045959259845950916 0.30912219818026176 5.1235080969941835 0.016488289430849935 0.014211863123211339 308.49184001680504 -2.489243680905588 0.07028179569020854 SNS(ph)VEKPVSSILSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SNSVEKPVSSILSR 14 1 H0YJN0;Q9UI08-5;Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-3 H0YJN0 EVL Ena/VASP-like protein 1 S(0.011)NS(0.989)VEKPVSSILSR;S(0.001)NS(0.999)VEKPVSSILSR;S(0.005)NS(0.995)VEKPVSSILSR;SNS(1)VEKPVSSILSR;S(0.017)NS(0.803)VEKPVS(0.04)S(0.006)ILS(0.133)R 197.84 1.3855e-08 5218210000.0 2629010.0 1994798.0 1653095.0 1942271.0 1696412.0 2348544.0 2354580.0 2050353.0 2979630.0 2573620.0 True False 2614855.702270472 2061193.6455491446 1885836.4070406796 2188162.30945447 1912440.0127783136 2186194.6811579126 2240679.9700309127 2203360.752341572 2245340.1114964364 2409369.368213062 1.0852863561595834 0.855490931669748 0.7827095471207609 0.9081888141864055 0.7937512769977223 0.907372157212794 0.929986078345779 0.914496872671591 0.9319202531248747 1.0 21.200224152124367 1.0835397131783786 0.8087554336347097 0.9969429150488155 0.8818891755835249 0.13899195353628613 0.07896197898159187 1.1392235814738023 1.6860990562658813 0.07389431203692676 0.027441773059475864 12.12103522056454 -1.0835397131783786 -0.11505373946529063 SNSFFEGVDWEHIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNSFFEGVDWEHIR 14 0 Q15208 Q15208 STK38 Serine/threonine-protein kinase 38 0 ; 180.06 1.7955000000000004e-06 312933000.0 288767.0 338200.0 314874.0 331640.0 329290.0 332850.0 359030.0 296200.0 382390.0 344450.0 False True 287212.31055702985 349456.78255378304 359205.52226612956 373625.58999618446 371223.129645257 309840.8629446207 341662.3472722091 318303.94807312347 288155.1082634834 322466.9061015185 0.8906722058064779 1.0836981282158846 1.1139298807706024 1.1586478578938586 1.1511976039128466 0.9608454606721012 1.0595268562679965 0.9870902782591761 0.8935959095683663 1.0 18.298791582715097 1.928870359013871 1.2910896699335095 0.9513982648867084 1.0775130575140417 0.238625164734953 0.08165880521414626 0.6210508073702423 1.917516240158558 0.06266020627360602 0.027739073716703446 84.89270245109986 -1.928870359013871 0.12611479262733327 SNSFNST(ph)FEHHLPPSPLEHGTPFQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SNSFNSTFEHHLPPSPLEHGTPFQR 25 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 S(0.007)NS(0.129)FNS(0.317)T(0.547)FEHHLPPSPLEHGTPFQR 246.81 1.142e-38 356100000.0 150850.0 124010.0 159830.0 175940.0 218230.0 189210.0 132710.0 98013.0 209870.0 134920.0 True False 150037.8403610107 128137.59788437198 182332.67473273553 198213.9859604652 246020.29694945068 176130.35805243126 126290.31029856816 105327.22775992945 158150.35061392083 126309.29008917662 1.1878606890679324 1.0144748481596606 1.4435412834955006 1.5692748001395824 1.9477609032222092 1.3944370831953854 0.9998497355927259 0.8338834592892299 1.2520880332892683 1.0 16.946601228152012 2.2519673325080913 5.784812271376762 0.9866478949931802 1.440738034422563 0.3877524880592307 0.24776313762393298 0.17473663357630928 19.24122297912178 0.09981057721459193 0.07929649578733258 178.6353200882382 -2.2519673325080913 0.4540901394293829 SNSGLATYS(ph)PPMGPVSER ddPTM_BT-474_Trastuzumab_2h_R1 4 SNSGLATYSPPMGPVSER 18 0 H0Y465;P21359-2;P21359-6;P21359;J3KSB5;P21359-4 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 SNSGLAT(0.079)YS(0.921)PPMGPVSER;SNSGLAT(0.003)YS(0.997)PPMGPVSER;SNSGLAT(0.002)YS(0.998)PPMGPVSER;SNSGLAT(0.085)YS(0.915)PPMGPVSER 301.93 1.3075999999999995e-49 634400000.0 685260.0 720570.0 671480.0 674450.0 696990.0 855440.0 790780.0 695350.0 908950.0 849600.0 True False 681570.6362995437 744553.7368562369 766018.5473912124 759835.3008470838 785747.5451166081 796305.4462891602 752526.9503270416 747240.547915756 684951.4518059919 795377.8006208449 0.8569143314881718 0.9361007263152976 0.9630876632378781 0.955313688984005 0.9878922249316995 1.001166295649176 0.9461251618283092 0.9394787575570821 0.8611649096458841 1.0 19.6012807708254 4.726919317461624 2.847442307037861 0.9557628504112688 0.8405998967332337 0.3821339642501639 0.03798354525339088 0.4330793630702549 5.013885022026033 0.009506415177252566 0.11405271985566463 53323.58225817588 -4.726919317461624 -0.1151629536780352 SNSQSDSHDEEVS(ph)PTPPNPVVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SNSQSDSHDEEVSPTPPNPVVK 22 0 P31321;C9JSK5;C9J4C2;C9IZL8;C9JR00 P31321 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 1 SNSQSDSHDEEVS(0.999)PT(0.001)PPNPVVK;SNSQSDSHDEEVS(1)PTPPNPVVK;SNSQSDSHDEEVS(0.999)PT(0.001)PPNPVVK 170.19 4.7874e-12 793270000.0 469183.0 507451.0 464580.0 500697.0 569899.0 602253.0 623843.0 600889.0 745452.0 584425.0 True False 466656.9708591319 524341.1997743929 529988.8257982498 564085.1888623805 642472.259593983 560620.6676610693 593665.3307783116 645730.3884325167 561745.3431450358 547126.4961485842 0.8529233625936496 0.9583546098853098 0.9686769504475246 1.030995926596819 1.1742663974721954 1.024663714163864 1.085060465828891 1.1802213802073926 1.026719318291764 1.0 19.061514898438336 4.126313942776913 1.0837771963302676 1.0953565591398935 0.8523866745541621 0.5761518051533112 0.06093382841834525 0.49781558586147845 0.8961224665225309 0.019411288786466644 0.11064340845088101 13375.620639643268 -4.126313942776913 -0.24296988458573143 SNT(ph)PILVDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SNTPILVDGK 10 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;K7EQ48;A0A0J9YX90;K7ERC6;K7EPY4;K7EP41 P06744 GPI Glucose-6-phosphate isomerase 1 S(0.009)NT(0.991)PILVDGK;S(0.013)NT(0.987)PILVDGK;S(0.008)NT(0.992)PILVDGK;S(0.016)NT(0.984)PILVDGK 159.52 8.5614e-05 940760000.0 2765740.0 1838960.0 1673400.0 1397370.0 1424420.0 2574460.0 2553480.0 2119010.0 3191050.0 2131310.0 True False 2750849.563142602 1900168.671925204 1909000.1745464555 1574276.8987244272 1605811.4438012012 2396493.639826978 2429958.4171591247 2277141.2863147557 2404658.4853792964 1995287.9710937073 1.3786729549793943 0.9523280345762001 0.9567542140295902 0.7889973384952024 0.8048018466833053 1.2010765736804156 1.2178484771935727 1.141259466956317 1.2051686374178834 1.0 20.928165548597367 2.71374629808795 24.762104433354022 1.1653322871126355 0.9634856915965113 0.22627022909979766 0.16177572371593318 950.8984935414286 948896.2193939226 0.05328153287811548 0.05025474592307676 517.304549743664 -2.71374629808795 -0.20184659551612416 SNT(ph)PTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNTPTPR 7 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9;Q04727-4;Q04727;Q04727-3;Q04727-2;H7C4E4;H7C4W5;H0Y5S0;H7C4P7;Q5JSY7 H0YKT5;Q04727-4 TLE3;TLE4 Transducin-like enhancer protein 3;Transducin-like enhancer protein 4 1 S(0.006)NT(0.941)PT(0.053)PR;S(0.034)NT(0.963)PT(0.003)PR 123.75 0.0471 431460000.0 571650.0 549740.0 470440.0 464660.0 450510.0 394460.0 542420.0 520860.0 666070.0 543720.0 True False 568572.2999162851 568037.7635751525 536673.8628622178 523485.90835733735 507879.77811802685 367191.9086589609 516181.0723543773 559729.2180734887 501925.9733807324 509019.3240978888 1.116995510777394 1.1159453810164464 1.0543290548219164 1.0284205010980418 0.9977612913185929 0.7213712550298911 1.0140696981773354 1.099622728597722 0.9860646730264562 1.0 18.957360901368432 3.818816702652415 1.717363973819637 0.9775716222816623 1.1167807435288468 0.2834553474418482 0.09157566140165128 0.5831737020100402 3.3071905325708917 0.029808166099215803 0.07319264857590448 6588.957445017046 -3.818816702652415 0.13920912124718454 SNTENLSQHFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SNTENLSQHFR 11 0 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2;F8VVQ7 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ;;; 281.17 2.1723000000000003e-27 2707770000.0 1215480.0 1821030.0 1954040.0 1963830.0 1707870.0 1884320.0 1981440.0 1749870.0 2088530.0 1875030.0 False True 1208935.990732524 1881641.88271412 2229151.8471798445 2212450.6766439765 1925357.121161427 1754061.3936121645 1885590.1773641403 1880454.1850598168 1573839.7663681924 1755363.9801060525 0.6887095807101412 1.071938301138228 1.2699086186359865 1.2603942553898757 1.0968421039635918 0.999257939374027 1.0741875751889474 1.0712616906644097 0.8965888466465552 1.0 20.743338778115206 1.2728514500249717 12.499625180686648 0.9483484411543069 1.078589829536984 0.08323315757782768 0.15288994128474206 2.104557224363798 766.405826924333 0.10543588849711574 0.03833055387838653 18.743532778218775 -1.2728514500249717 0.13024138838267707 SNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETR ddPTM_BT-474_Trastuzumab_2h_R1 2 SNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETR 38 1 P13639 P13639 EEF2 Elongation factor 2 0 ; 135.11 3.0351e-09 933370000.0 525310.0 545300.0 534990.0 599970.0 572920.0 597320.0 655440.0 555100.0 672050.0 631340.0 False True 522481.78932742786 563449.9808591898 610311.9417835589 675926.1404836908 645877.9660371122 556028.6743400363 623733.8631760488 596524.380740686 506432.28250862693 591047.3406826317 0.8839931311153285 0.9533076998678849 1.0325940069008306 1.143607447252919 1.0927685848161566 0.9407515034207743 1.0553027147633653 1.0092666689807428 0.8568387803314056 1.0 19.172914163947535 1.3835422685028484 9.911877688127957 0.9288805756576715 1.0192180937693123 0.1586580897708011 0.07835853149059346 0.5811468816605206 56.405841602600695 0.05411193829261926 0.019841893178822807 24.18478709329298 -1.3835422685028484 0.09033751811164081 SNTHEFVNLVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SNTHEFVNLVK 11 0 O75436;S4R3Q6;O75436-2 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ;; 112.64 0.0014982 1311640000.0 2100740.0 2407000.0 2320530.0 2256390.0 2332850.0 2813450.0 2700190.0 2471730.0 3019290.0 2806510.0 False True 2089429.8492541534 2487115.539937776 2647240.4535916634 2542048.7426471245 2629924.6196147427 2618962.8236489254 2569571.4939724994 2656183.04379062 2275226.4359132093 2627396.1290259054 0.795247365317844 0.946608511926164 1.0075528483682112 0.9675163613754645 1.0009623560607797 0.9967902421398076 0.9779916570574974 1.0109564425579736 0.8659624678509131 1.0 21.325202299410265 4.719368888587631 3.178382510589165 0.9814097014396052 0.7719065303167294 0.6489101509267214 0.04016223299296376 0.1790628924531322 2.890852790062057 0.009185666745871277 0.09091091907396703 52404.53703518091 -4.719368888587631 -0.20950317112287575 SNVSSPATPTASSSSST(ph)TPTRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;A6NNK5;Q12888-3;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPTASSSS(0.004)S(0.032)T(0.718)T(0.245)PT(0.001)RK 173.36 2.2549e-12 466490000.0 121160.0 76215.0 92612.0 94161.0 80656.0 130850.0 115710.0 103720.0 150850.0 128220.0 True False 120507.68802214158 78751.77020205968 105650.9646020654 106081.77294545517 90927.06351443364 121804.64748776835 110112.66524487465 111460.1130794881 113675.0387864392 120036.8898253351 1.0039221125896507 0.656063067917295 0.8801541322488231 0.8837430984742612 0.7574926645195574 1.0147267866153937 0.9173235444961867 0.9285488256291293 0.9470008674154003 1.0 16.87311831851485 2.7355835028394004 24.998928302966828 0.951119857701914 0.831338085038691 0.3274262888443755 0.08899030503651541 317.78300517205383 2668421.29123507 0.02652197283809564 0.026022403276921926 543.9807141397063 -2.7355835028394004 -0.11978177266322299 SNVSSPATPTASSSSSTT(ph)PTRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;A6NNK5;Q12888-3;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPTASSSSS(0.004)T(0.22)T(0.776)PTRK 263.49 1.1875999999999998e-37 349950000.0 153810.0 121820.0 118540.0 106490.0 106690.0 173630.0 173360.0 136430.0 213690.0 177930.0 True False 152981.9040498975 125874.70505825491 135229.40163184956 119971.62308133444 120276.33909882636 161627.36678105622 164973.91450048806 146611.09937750283 161028.96279929837 166574.35506646303 0.9184000981955347 0.7556667712027522 0.8118260555647545 0.7202286512438596 0.7220579605476257 0.9703016212583686 0.9903920350444316 0.8801540868581188 0.9667092076391228 1.0 17.345806782305406 2.730146138223081 24.895553894629607 0.9504802362694523 0.7817922264708808 0.6729431740267868 0.0610342012657008 369.2435652057109 1092463.0176890243 0.01984326679620986 0.018987031859678434 537.2125356645549 -2.730146138223081 -0.16868800979857157 SNVVS(ph)PTKNEDNGAPENSVEKPHEKPEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2;Q71RC2-6 Q71RC2-5 LARP4 La-related protein 4 1 S(0.002)NVVS(0.499)PT(0.499)KNEDNGAPENSVEKPHEKPEAR 221.6 1.2966999999999996e-34 750300000.0 429970.0 232330.0 241790.0 186240.0 200410.0 379870.0 331430.0 316580.0 651430.0 363690.0 True False 427655.0892941577 240062.96360354946 275831.93032364483 209817.96490438265 225931.02557686536 353610.48101779557 315397.46471444867 340204.8071606671 490893.8052147834 340478.9928293257 1.2560395745429478 0.7050742297158036 0.8101290714928572 0.6162434961429751 0.6635681799320858 1.0385676898282308 0.9263345796859489 0.9991947060628317 1.4417741345377428 1.0 18.377206262759657 1.7787958872245664 1.4193646213930786 1.1973029292739552 0.816010171902421 0.3097338808599528 0.2071449057462726 0.45954519595109555 1.7592726422170564 0.15925148968258598 0.06372978424164015 60.0891260007053 -1.7787958872245664 -0.38129275737153423 SNYNFEKPFLWLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SNYNFEKPFLWLAR 14 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 190.87 5.045600000000001e-07 5921700000.0 2753300.0 3201700.0 3646100.0 2672300.0 2070600.0 2527500.0 3151900.0 2234200.0 5311000.0 3065200.0 False True 2738476.538720387 3308266.649031479 4159439.187530671 3010612.906002907 2334278.636592272 2352779.8740950287 2999430.555572729 2400927.3490377245 4002175.2137539163 2869576.3117502504 0.9543138920916513 1.1528763446662469 1.4494959309842121 1.0491489261585916 0.8134575919915221 0.8199049680125041 1.0452520615293468 0.8366835686531433 1.3946920307942101 1.0 21.452406310385477 3.485806852625352 24.840730767862265 0.961336203853125 1.1934649849604206 0.16901855343766992 0.19445712100327245 554.7056669911664 1586452.868050877 0.05223980758163802 0.07445133102376517 3060.6019641550392 -3.485806852625352 0.23212878110729562 SNYNLPMHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SNYNLPMHK 9 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 96.143 0.007567699999999998 2054700000.0 3270900.0 3788700.0 3336500.0 3546000.0 3603000.0 4121800.0 4334200.0 3392800.0 4080300.0 4363700.0 False True 3253289.837831156 3914804.589182486 3806250.1986221145 3994923.236420426 4061820.69334587 3836869.667673543 4124538.1877481234 3645987.964289311 3074764.738218811 4085204.930048472 0.7963590305841903 0.9582884227881405 0.9317158536222937 0.9779003268687981 0.9942758718098569 0.9392110636731308 1.0096282214413133 0.8924859405391079 0.752658628114974 1.0 21.961977020803825 -0.6990355042649532 7.263163368654475 0.9999999999895266 0.9251282998081832 0.08118638415026214 0.07964964540931825 0.0 0.0 0.0757542781692024 0.017855454466078186 0.19996983844253624 0.6990355042649532 -0.07487170018134337 SPAFVGPGRPGEQPS(ph)PCQEGSQGGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPAFVGPGRPGEQPSPCQEGSQGGSR 26 1 I3L2J0 I3L2J0 CIC 1 SPAFVGPGRPGEQPS(0.979)PCQEGS(0.021)QGGS(0.001)R;SPAFVGPGRPGEQPS(0.997)PCQEGS(0.003)QGGSR 121.09 8.864e-05 956240000.0 114747.0 129033.0 126157.0 134489.0 146029.0 127868.0 146418.0 131133.0 124724.0 139478.0 True False 114129.21490159012 133327.78540290424 143918.80902369853 151515.29361053233 164624.92756830543 119028.7861288953 139335.20196892304 140918.81033988166 93987.44141597504 130576.3946268765 0.8740417073676726 1.0210711192010613 1.1021809067017674 1.1603574600408364 1.2607556521890728 0.9115643487402251 1.067078030198911 1.0792058606194384 0.719788915022085 1.0 16.99453458699656 1.263539708255129 24.94279657650092 0.859894412833388 1.0657538202438375 0.2969130871000685 0.12258419365328527 221.82018990732536 221498.60066830926 0.0808859838710517 0.029508474443276943 18.34592899280377 -1.263539708255129 0.2058594074104495 SPAGLQVLNDYLADK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAGLQVLNDYLADK 15 0 P24534;C9JZW3;F2Z2G2;F8WF65 P24534 EEF1B2 Elongation factor 1-beta 0 194.85 3.0351999999999995e-11 0.0 110690.0 103210.0 103980.0 91510.0 103530.0 136540.0 111820.0 100120.0 142600.0 111730.0 False True 110094.05733881502 106645.28245823747 118619.48018963821 103095.15661726822 116713.93182961366 127101.3111805874 106410.83940611768 107591.4627990587 107458.14074210284 104599.29574313443 1.052531535290392 1.0195602341351073 1.1340370826294404 0.9856199880201877 1.1158194804315822 1.2151258789802124 1.017318889674285 1.0286059961940104 1.0273313981576788 1.0 16.67451361252924 SPAGPAATPAQAQAAST(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPAGPAATPAQAQAASTPR 19 0 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 SPAGPAATPAQAQAAS(0.002)T(0.998)PR;SPAGPAATPAQAQAAS(0.271)T(0.729)PR;SPAGPAATPAQAQAAS(0.006)T(0.994)PR;SPAGPAATPAQAQAAS(0.058)T(0.942)PR 325.62 9.575199999999995e-62 1704590000.0 936560.0 878034.0 752790.0 793784.0 710914.0 894930.0 910450.0 807553.0 1004130.0 875882.0 True False 931517.6650215973 907258.8309072389 858776.288632022 894276.9730114922 801444.6839825948 833065.5955386204 866408.0552432474 867816.7055310453 756675.6161526488 819982.4608796928 1.136021451022559 1.1064368741910824 1.0473105579730455 1.090605001541246 0.9773924714472425 1.0159553835394135 1.056617789499727 1.0583356924488787 0.9227948794671447 1.0 19.64523352578643 7.999999998932381 0.32842276797517006 1.0030970146330358 2.4461457744141257 0.5383213635388577 0.0411527215098855 48.695696599826555 0.6958354760344655 0.03767582726021604 42.571923272869455 99999999.75417167 -7.999999998932381 1.44304875978109 SPAGSQQQFGYSPGQQQTHPQGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 SPAGSQQQFGYSPGQQQTHPQGS(1)PR;SPAGSQQQFGYSPGQQQTHPQGS(1)PR 195.92 5.7024e-25 880130000.0 161172.0 175184.0 165712.0 181865.0 166282.0 183973.0 194400.0 164240.0 179852.0 194600.0 True False 160304.26785989272 181014.89353903575 189042.80920547494 204889.0903529613 187457.02706936953 171255.37953585948 184996.12931988284 176496.42279382126 135529.8844933289 182180.46139455814 0.8799201990860757 0.9936021248019674 1.0376678583333623 1.1246490912613392 1.0289634005448238 0.9400315391943288 1.0154553781660847 0.9687999549609952 0.743932052075576 1.0 17.47500871480236 1.431335501817819 8.18418750473256 0.8659458785093139 1.004976700980092 0.2780042684143016 0.0830394533230474 0.25899427831532007 36.467627590215926 0.050679856029200714 0.020176839852950164 26.998242993142892 -1.431335501817819 0.13903082247077814 SPALKS(ph)PLQSVVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.002)PALKS(0.998)PLQSVVVR;SPALKS(1)PLQSVVVR 147.06 4.9269e-06 2807900000.0 1888270.0 1845590.0 1759410.0 1746830.0 1756940.0 2046200.0 1977530.0 1868900.0 2493600.0 1915230.0 True False 1878103.7641265176 1907019.347467284 2007119.6349341334 1967978.4988934826 1980675.894800748 1904751.0102366959 1881869.3190017887 2008366.8080819093 1879085.692528105 1792998.3816891022 1.0474653983553748 1.0635923417124158 1.1194207732877692 1.0975907836790906 1.1046724386526459 1.0623272333588594 1.0495655424010841 1.1201163529160123 1.0480130443608677 1.0 20.773942755394287 -0.37134425680833694 7.5445194445885395 0.9999981273264565 1.082237069243398 0.4178512362018765 0.02783587505384406 0.0 0.0 0.026717405112144987 0.006297352776835285 0.4252611832058408 0.37134425680833694 0.08223894191694148 SPALLLSQLLPYMENRR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPALLLSQLLPYMENRR 17 1 Q13268;C9JZP6;Q13268-2;H0YJG9;H0YJP4 Q13268;H0YJP4 DHRS2 Dehydrogenase/reductase SDR family member 2, mitochondrial 0 ; 163.91 4.2647e-09 260820000.0 73980.0 131272.0 138276.0 151467.0 159490.0 169857.0 119072.0 91288.0 140320.0 139068.0 False True 73581.69989995068 135641.3091644004 157744.05888346225 170642.7066697386 179800.10612870738 158115.1853903694 113312.03246078755 98100.37411107142 105740.01619166801 130192.56117789523 0.5651759150771185 1.041851454009419 1.211621136079508 1.3106947518804262 1.381032099699063 1.2144717329457917 0.8703418339390212 0.7535021450037148 0.8121817040467063 1.0 16.990287493920768 2.168744565680287 6.005137012207131 0.8258634859852914 1.1414496581392435 0.2503005136099937 0.21794405043031942 0.26507362947975915 16.9727884364596 0.08752822847004305 0.0646222518004787 147.4838838014526 -2.168744565680287 0.3155861721539521 SPAPGLAS(ph)GDRPPSVSSVHSEGDCNRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAPGLASGDRPPSVSSVHSEGDCNRR 27 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.12)PAPGLAS(0.879)GDRPPS(0.001)VS(0.001)SVHSEGDCNRR 111.18 0.00068646 436060000.0 21616.0 23730.0 30561.0 22650.0 17132.0 26129.0 25815.0 21564.0 16735.0 18111.0 True False 21499.621857763384 24519.838704912094 34863.72315902606 25517.48767764318 19313.658650680405 24322.76373105003 24566.22982712333 23173.21517977327 12610.883487511162 16955.140474392796 1.2680297099416002 1.446159572782319 2.056233223881598 1.5050000745309084 1.1391034288303101 1.4345362557027759 1.4488956823581318 1.3667368438953118 0.7437793574495754 1.0 14.049435116780403 1.344457129657784 4.472991005827326 0.8759873868665417 1.4733045050439597 0.5087977199615914 0.2313475816815245 0.17596453694782693 5.375998044889256 0.18161270416104408 0.06171011502262833 22.103300580791 -1.344457129657784 0.5973171181774181 SPAPPPPAVFPAARPEPGDGLS(ph)SPAGGSYETGDRDDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR 38 2 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 SPAPPPPAVFPAARPEPGDGLS(0.5)S(0.5)PAGGSYETGDRDDGR 103.85 1.0490999999999997e-05 630210000.0 115150.0 104860.0 89801.0 102110.0 115860.0 93087.0 80037.0 103850.0 106940.0 91249.0 True False 114530.04519436772 108350.20171079128 102444.20023571553 115037.11553042574 130614.08424397817 86652.11479322796 76165.30453896841 111599.81433961497 80586.06992258395 85425.41069780075 1.340702306946196 1.2683603254081952 1.1992239709343642 1.3466381325034396 1.5289839776835956 1.0143599437849562 0.891600097872626 1.3064006766605814 0.9433501023210019 1.0 16.382377658232745 2.7147879132305457 24.928792553285017 1.0594741059844406 1.3258860471824507 0.5746353010906888 0.13017800207016092 657.4176025526134 689387.8091492649 0.04390465370818861 0.04141501514389687 518.5467459063753 -2.7147879132305457 0.26641194119801015 SPAPPPPAVFPAARPEPGDGLSS(ph)PAGGSYETGDRDDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR 38 2 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 SPAPPPPAVFPAARPEPGDGLS(0.217)S(0.783)PAGGSYETGDRDDGR 202.6 9.7128e-31 649840000.0 118430.0 137650.0 117720.0 126560.0 110630.0 124080.0 128020.0 110020.0 114950.0 128220.0 True False 117792.38603880985 142231.597038818 134293.95275941712 142582.48302351095 124718.07474461674 115502.64165290234 121827.183516108 118230.25107024002 86622.11275108505 120036.8898253351 0.9813015499669209 1.184899052664379 1.1187723453583924 1.1878222039156612 1.0389978857840552 0.9622262108004421 1.0149145291366506 0.9849493038538076 0.7216290998302964 1.0 16.87311831851485 2.4011575571483252 0.9542032400281555 0.9016209392766039 1.1210468671343945 0.4589331832067822 0.09332958083324844 0.5031386970594731 0.9059750956531154 0.06313795129973598 0.04153891920104694 251.85904783046996 -2.4011575571483252 0.21942592785779058 SPAS(ph)PLNNQGIPTPAQLTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPASPLNNQGIPTPAQLTK 19 0 A0A2U3U043;J3QLL6;J3KSG1;J3QRK1;Q719H9 A0A2U3U043 KCTD1 BTB/POZ domain-containing protein KCTD1 1 S(0.031)PAS(0.969)PLNNQGIPTPAQLTK;S(0.002)PAS(0.998)PLNNQGIPTPAQLTK;SPAS(1)PLNNQGIPTPAQLTK 274.27 2.2151999999999997e-39 350070000.0 860158.0 877713.0 840375.0 838485.0 863663.0 1001406.0 986831.0 922787.0 1183215.0 1061006.0 True False 855527.0049005382 906927.1466162873 958692.495329555 944637.1150281961 973645.3637183394 932181.1602761641 939094.2144694927 991650.0517574411 891627.5175187045 993291.6887070633 0.8613049063303359 0.9130521848992877 0.9651671369338195 0.9510168319819535 0.9802209912636066 0.9384767544864441 0.9454364967977152 0.9983472760637321 0.8976492279718037 1.0 19.921857914301953 4.543834850394156 2.22212046624527 0.9607225272269658 0.8539585470468689 0.5375560302421645 0.028742683622835278 0.299546849785336 2.278530209877239 0.006878796587788295 0.053308173849306154 34981.211832144916 -4.543834850394156 -0.10676398018009692 SPAVATSTAAPPPPS(ph)SPLPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPAVATSTAAPPPPSSPLPSK 21 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 SPAVATSTAAPPPPS(0.482)S(0.482)PLPS(0.036)K 48.61600000000001 0.096701 757260000.0 825640.0 845300.0 815600.0 778510.0 764060.0 919290.0 805000.0 781880.0 992130.0 790730.0 True False 821194.8459772276 873435.299505359 930429.3906777154 877069.2861775708 861358.5120615726 855741.6460758917 766059.0746013657 840227.8559061922 747632.8553608869 740264.9344219881 1.1093256046477886 1.1798955467036307 1.2568870243789287 1.1848045819736173 1.163581404452362 1.1559937615362936 1.0348444711885727 1.135036683268345 1.0099530865184798 1.0 19.497682165681184 1.8275759855376599 0.6934523237887068 1.0045618327848074 1.1897790801583559 0.6444128920165406 0.04760414593494349 0.43383723153055836 0.4116770048388464 0.043783594398542576 0.022684881594928444 67.23199300453277 -1.8275759855376599 0.1852172473735485 SPAVATSTAAPPPPSS(ph)PLPSK ddPTM_BT-474_Trastuzumab_2h_R1 7 SPAVATSTAAPPPPSSPLPSK 21 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 SPAVATSTAAPPPPS(0.011)S(0.989)PLPSK;SPAVATSTAAPPPPS(0.005)S(0.995)PLPSK;SPAVATSTAAPPPPS(0.001)S(0.999)PLPSK;SPAVATSTAAPPPPS(0.415)S(0.585)PLPSK;SPAVATSTAAPPPPS(0.006)S(0.994)PLPSK;SPAVATSTAAPPPPS(0.001)S(0.999)PLPSK;SPAVATSTAAPPPPS(0.039)S(0.961)PLPSK 362.59 2.375399999999999e-96 29850000000.0 13797230.0 12845100.0 12422540.0 11627590.0 11944180.0 14716420.0 13524150.0 12226690.0 16289180.0 13427760.0 True False 13722947.246696362 13272641.388473073 14171525.653346684 13099641.701796336 13465200.524298612 13699108.524126437 12869935.197229907 13139107.693673825 12274929.852829218 12570788.860716285 1.0916536264148522 1.0558320194168622 1.1273378154996065 1.0420699804077305 1.071150002875107 1.0897572678939944 1.023796942246676 1.0452094804275598 0.9764645631101461 1.0 23.58357185094157 1.721529690877084 1.071761943250519 0.990382684173306 1.079763594547963 0.6263918101176323 0.026221820229059962 0.3065477265754005 0.6586915909891162 0.02121357391843889 0.008386043661678798 52.66592191267098 -1.721529690877084 0.0893809103746569 SPDEATAADQES(ph)EDDLSASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPDEATAADQESEDDLSASR 20 0 C9JME2;Q9Y4F1;Q9Y4F1-2;M0QXT1 C9JME2 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 1 SPDEATAADQES(1)EDDLSASR 331.9 7.713199999999998e-80 247620000.0 85753.0 111470.0 114670.0 97435.0 111070.0 153880.0 112820.0 93327.0 109120.0 125600.0 True False 85291.31537605393 115180.21156496201 130814.53927049227 109770.26100976436 125214.10613653237 143242.6377945571 107362.46558574692 100291.5346449035 82228.83813308741 117584.10046842998 0.7253643565437122 0.9795560037973553 1.1125189438823364 0.9335468024372602 1.064889773682888 1.2182143438093158 0.9130695830306798 0.8529344889773652 0.6993193621034243 1.0 16.843333468912874 2.0071683126006867 24.967846164761987 0.8465584800102265 1.0135027578580442 0.20518697669287178 0.1379075960681096 248.38202281345497 865131.5554860821 0.052075304784124504 0.03837859949876778 101.66426205325095 -2.0071683126006867 0.16694427784781773 SPDKPGGS(ph)PSASR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 SPDKPGGS(0.995)PS(0.005)ASR;SPDKPGGS(0.996)PS(0.004)ASR 144.17 2.4939e-05 462270000.0 470100.0 420600.0 356640.0 370070.0 378610.0 476230.0 450630.0 432590.0 650880.0 451020.0 True False 467569.03383301955 434599.4167419306 406851.8120295493 416920.8240558681 426823.7393027149 443309.34102483664 428831.3053262281 464872.0624475109 490479.34534516046 422235.5174623515 1.1073654737600567 1.0292819972935638 0.9635660554439884 0.9874129645975193 1.0108664990286433 1.049910115778842 1.0156211109466051 1.1009781110821903 1.1616250293034478 1.0 18.687688414352596 1.7242664772150609 5.937044749729096 1.0982356686239236 1.0204367565029662 0.23482704906030338 0.051633402799615966 0.17327764592297643 15.531543448346193 0.02584918507369027 0.013269584482459958 52.99885379372405 -1.7242664772150609 -0.07779891212095746 SPDKPGGSPSASR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 0 ; 141.34 3.6297e-05 177973000.0 212988.0 230260.0 211874.0 199683.0 205691.0 216858.0 225981.0 223550.0 283760.0 205122.0 False True 211841.2962731916 237924.06490489058 241704.01755817857 224962.8473260407 231884.5296239261 201867.1168888225 215049.43569874731 240232.43616389856 213831.15018919442 192030.93834622073 1.1031623242461792 1.2389881909337295 1.2586722724980917 1.1714927254088903 1.2075373459137695 1.051221842830699 1.1198686917366698 1.251009020904607 1.1135244769968742 1.0 17.55097923852337 SPDLEAS(ph)LDTLENNCHVGSDIDFRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPDLEASLDTLENNCHVGSDIDFRPK 26 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(0.055)PDLEAS(0.472)LDT(0.472)LENNCHVGSDIDFRPK 193.75 1.4838999999999999e-18 166590000.0 53075.0 53137.0 39767.0 40924.0 45655.0 75346.0 76332.0 55442.0 82834.0 74044.0 True False 52789.25009718689 54905.63292300518 45365.84793903963 46104.97420396772 51468.89363161416 70137.5083654061 72639.52954344291 59579.36356877155 62420.6706187331 69318.44852774231 0.7615469073295807 0.792078214229378 0.6544556161103854 0.665118380217581 0.7424992152127513 1.011815899736071 1.047910492606762 0.8595022657630165 0.9004914556584657 1.0 16.080951744284395 2.792248288367431 6.602296303736725 0.954283258913914 0.7186602063981016 0.7803145776536635 0.06379048411321876 0.12141166281643014 12.096088541143269 0.02150387506101931 0.022715417054570586 619.7953139450287 -2.792248288367431 -0.2356230525158124 SPDMLAHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPDMLAHFR 9 0 O43747;O43747-2;H3BNR4 O43747 AP1G1 AP-1 complex subunit gamma-1 0 86.13600000000002 0.014343 271000000.0 140140.0 188350.0 195480.0 170490.0 124530.0 140790.0 186690.0 124920.0 231050.0 173470.0 False True 139385.50181101772 194619.11589002062 223001.8848573807 192074.01651926653 140388.15735286183 131057.51868401133 177659.09147494324 134242.16473090698 174110.82341138046 162398.9960848612 0.8582904154049213 1.1984009789587793 1.373172804226275 1.1827290879242796 0.8644644408977895 0.8070094141193308 1.0939666854966759 0.8266194247947141 1.072117609153195 1.0 17.309183188561693 3.2469935800615977 24.961943510947215 0.9321382125120691 1.1720967473813522 0.3167434840949539 0.14881870303707312 195.37665745083174 578319.9584188376 0.04135363544232773 0.05509691442406093 1766.0117145054571 -3.2469935800615977 0.2399585348692831 SPDTNYLFMGDYVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPDTNYLFMGDYVDR 15 0 P67775;P62714;P67775-2;E7ESG8;E5RHC1;E5RFI3;E5RHP4 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 0 ; 145.52 9.4121e-06 637910000.0 69317.0 106928.0 95874.0 131531.0 109666.0 98106.0 94962.0 83195.0 86355.0 98778.0 False True 68943.80497384275 110487.033840659 109372.22584825309 148182.81111382289 123631.3150586923 91324.16313668327 90368.32526993168 89403.43335565011 65073.96734771593 92473.90347189954 0.7455487698190767 1.1947915000066283 1.1827361205909137 1.6024284208879738 1.3369319388173195 0.9875668670614122 0.9772305685937904 0.9667963609086485 0.7037008810544074 1.0 16.49675866795055 2.5959526546516614 4.76892030088431 0.924551828863328 1.2304336483344247 0.3141282153756316 0.21169691938140325 0.29237232631779847 10.190020944570684 0.07352471835256986 0.06870819120587228 394.41430198846155 -2.5959526546516614 0.3058818194710967 SPEDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPEDKR 6 1 A0A3B3ISG5;P14735;Q5T5N3 A0A3B3ISG5 IDE Insulin-degrading enzyme 0 ; 102.98 0.056243 125701000.0 358480.0 313150.0 301590.0 267820.0 292660.0 202529.0 312560.0 330370.0 465420.0 401730.0 False True 356549.9835108723 323573.0084468274 344051.2505327267 301725.9845397964 329928.51626827696 188528.6469319847 297440.2787048485 355023.88698486856 350723.477308482 376091.24746164324 0.9480411626628883 0.8603577207146463 0.9148079165756596 0.8022680309000513 0.8772565660463174 0.5012843244941837 0.7908726425099372 0.9439833800468241 0.9325488951833465 1.0 18.520723206258758 -0.7321181121099725 5.730330129661301 1.0000000087197916 0.8393473302791107 0.12601960186362648 0.12531308639975622 1.4100727123670068e-08 3.1169096236087422e-09 0.12617116393212555 0.029738826984534807 0.18530275995944412 0.7321181121099725 -0.16065267844068087 SPEDLER ddPTM_BT-474_Trastuzumab_2h_R1 4 SPEDLER 7 0 P06744;A0A2U3TZU2;P06744-2;Q8N196 P06744 GPI;SIX5 Glucose-6-phosphate isomerase;Homeobox protein SIX5 0 ;;; 173.59 0.0019951 8000300000.0 4181740.0 4543130.0 4345680.0 4295110.0 3975470.0 4880550.0 4862110.0 3777760.0 4964000.0 4624960.0 False True 4159225.976474989 4694345.335669918 4957513.970672308 4838870.485612448 4481722.540043223 4543169.0660789255 4626911.164236091 4059675.63427658 3740688.714192136 4329791.09317253 0.9606066174955883 1.0841967278911537 1.1449776361011061 1.1175759711000064 1.0350897869207287 1.0492813552235494 1.0686222648321482 0.9376146670628327 0.863942077965534 1.0 22.045865987783174 1.7038843715564813 4.276691552680607 0.9223196397119013 1.0702038696110976 0.5369734795884649 0.055862728172707536 0.1264515874624776 5.403052056186594 0.030788484066366764 0.014905030265818665 50.56900069810568 -1.7038843715564813 0.14788422989919625 SPFIEEQLHTVLEKS(ph)PENSPPVKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPFIEEQLHTVLEKSPENSPPVKPK 25 2 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 SPFIEEQLHT(0.001)VLEKS(0.982)PENS(0.016)PPVKPK;SPFIEEQLHTVLEKS(1)PENSPPVKPK 309.94 9.585499999999998e-75 1076590000.0 441316.0 301286.0 318032.0 287462.0 271191.0 480391.0 465612.0 409525.0 638260.0 472992.0 True False 438940.00369081687 311314.12237876694 362808.1412163008 323854.65972585743 305725.5663750097 447182.7008887768 443088.5687494305 440085.8350258135 480969.37524582405 442805.24561117584 0.9912710114465243 0.703049761637489 0.819340206134053 0.7313704228568059 0.690428962631272 1.0098857349161685 1.0006398369058696 0.9938586757670205 1.0861871669608898 1.0 18.756312787279864 2.7230237763363427 24.20811554834139 1.0142956249017006 0.7811189766320916 0.660624514928687 0.08271366333201909 312.07296763850366 486243.2487993445 0.025699632477035033 0.02431631974189771 528.4741833792167 -2.7230237763363427 -0.23317664826960893 SPFNSPS(ph)PQDSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPFNSPSPQDSPR 13 0 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 1 SPFNS(0.032)PS(0.968)PQDSPR;SPFNS(0.029)PS(0.971)PQDSPR 103.43 0.0016899 685430000.0 819300.0 2803900.0 2568570.0 3225900.0 3270900.0 1853290.0 2003520.0 1440640.0 615030.0 1639910.0 True False 814888.9798327883 2897226.1165066552 2930202.32958933 3634298.6092410176 3687429.7268567933 1725176.4244753984 1906602.083410346 1548147.8722216934 463464.09747977176 1535249.5398024118 0.5307860114634299 1.887136938584936 1.908616321726076 2.3672364101205043 2.4018438900371657 1.1237107582506949 1.241884158881251 1.008401456626355 0.30188193219678155 1.0 20.550041739952736 2.257466758384609 1.7210967737790217 0.8084652195060235 1.8381931049389106 0.39603022621589923 0.5387702449346324 0.3803680599794063 2.2555411968929406 0.2882685915493723 0.18301512890352822 180.91174321244154 -2.257466758384609 1.0297278854328873 SPFNSPSPQDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPFNSPSPQDSPR 13 0 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 1 SPFNSPS(0.004)PQDS(0.996)PR;SPFNSPSPQDS(1)PR 206.52 6.4198e-08 668750000.0 217193.0 253500.0 245030.0 244990.0 217450.0 272620.0 283250.0 229570.0 261780.0 253310.0 True False 216023.65702041102 261937.59425601413 279528.0941610601 276005.7088806091 245140.96857287257 253774.42107845176 269548.11537992174 246701.67913283937 197267.82667228396 237143.53893039806 0.9109405130527897 1.1045529447584619 1.178729538328691 1.163876149126783 1.0337240039452298 1.0701300243011675 1.13664541144861 1.04030529461419 0.8318498895733454 1.0 17.855401036592163 1.416925581315602 5.7423632486809915 0.9175980955997854 1.0896816582040452 0.40424669710033856 0.08099949820061653 0.18548896899888795 10.440038388961929 0.05359205787546808 0.0200279735239785 26.117137849151643 -1.416925581315602 0.17208356260425972 SPGETSKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGETSKPR 9 1 Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4;Q9UNZ2-6 Q9UNZ2 NSFL1C NSFL1 cofactor p47 0 ; 83.78299999999999 0.014533 100304000.0 177517.0 164305.0 160838.0 144497.0 156994.0 175555.0 187843.0 185530.0 219320.0 204857.0 False True 176561.26819599268 169773.7926005299 183482.59237104267 162790.30538438883 176986.2553236587 163419.29606201893 178756.3164600551 199375.19070225087 165271.52473743344 191782.85087309836 0.9206311585847803 0.8852396959771355 0.9567205385451908 0.8488261835887833 0.9228471394492385 0.8521058859957847 0.9320766463021094 1.0395882102836 0.8617638333408272 1.0 17.54911419548907 1.9958434566904777 24.978251025157327 0.9750951391168502 0.8982053244903062 0.2620919163908654 0.05185491862557599 192.5059041489224 1156843.5754775354 0.01853429191670628 0.01336040401176716 99.04748596269808 -1.9958434566904777 -0.07688981462654398 SPGGPGSHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGGPGSHVR 10 0 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 0 89.171 0.011694 21303000.0 38373.0 44666.0 43188.0 39661.0 39774.0 39133.0 41877.0 34347.0 45995.0 43044.0 False True 38166.404031641076 46152.68080883283 49268.49500317455 44682.078533466076 44838.98314103211 36427.827819173384 39851.24952432478 36910.14755053204 34660.14855142372 40296.89506817756 0.9471301440735832 1.1453160530295938 1.2226374989888948 1.108821869721459 1.1127155842942709 0.9039859710665505 0.9889409458694324 0.9159551247828016 0.8601195822353773 1.0 15.298381060925204 2.744707822330751 24.44202688745526 0.9322391146395504 1.1159243947869761 0.5771340752987342 0.07407770956727114 254.88032587334956 1013435.5598491079 0.02296186273458415 0.023786340441825312 555.5303907049149 -2.744707822330751 0.1836852801474257 SPGLVPPS(ph)PEFAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGLVPPSPEFAPR 14 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 SPGLVPPS(1)PEFAPR 106.6 0.00097811 415490000.0 380160.0 499810.0 424580.0 397080.0 415040.0 435000.0 416020.0 357870.0 501580.0 425180.0 True False 378113.26079974667 516445.873708475 484357.1734844831 447350.28728647006 467892.8838651875 404929.47387985623 395895.5232492674 384576.0766270386 377972.3298276572 398044.64838508825 0.9499267540307212 1.2974571465883382 1.2168413152885598 1.1238696189018502 1.175478393601023 1.0172966161527368 0.9946007937940127 0.9661631633217701 0.9495726958298103 1.0 18.60257074035895 2.6297156073675323 2.882588725550886 0.9754015154637763 1.1640922836048213 0.4985978991184091 0.08389808731070124 0.21078380214839973 3.3919850233605846 0.028352332682291044 0.026509944987063074 426.30026966343917 -2.6297156073675323 0.18869076814104502 SPGLYAIGYEECIERPLS(ph)PHMEQSSLDPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGLYAIGYEECIERPLSPHMEQSSLDPGK 30 1 A0A6I8PS01;Q6P1R3-3;Q6P1R3;Q6P1R3-2 A0A6I8PS01 MSANTD2 Myb/SANT-like DNA-binding domain-containing protein 2 1 S(0.062)PGLYAIGYEECIERPLS(0.937)PHMEQSSLDPGK 71.735 0.0034862 50608000.0 23991.0 25308.0 28560.0 25885.0 23695.0 35063.0 37359.0 27808.0 42036.0 30053.0 True False 23861.83512165069 26150.36148099095 32580.99975202986 29162.03834595117 26712.417798731753 32639.177339423924 35551.802444760804 29883.17416616283 31676.791053541623 28134.99181033221 0.8481194976885595 0.9294604262649037 1.158024142024627 1.0365042414990784 0.9494375537341356 1.1600919438489978 1.2636151694810471 1.062135520337654 1.1258859169779014 1.0 14.780077922998418 2.7343142018285786 24.942392950913785 1.1325526258436034 0.9938125764118094 0.3256374177698491 0.09830251990833482 445.4573487535893 2616497.8800722505 0.03240648438368753 0.03155008649215847 542.3931571606778 -2.7343142018285786 -0.13874004943179397 SPGQLQRPTGVAVDTNGDIIVADYDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGQLQRPTGVAVDTNGDIIVADYDNR 27 1 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 0 ; 188.22 7.9703e-18 729350000.0 192962.0 246523.0 226059.0 227646.0 238407.0 224363.0 255269.0 235383.0 248505.0 229156.0 False True 191923.11403209367 254728.36902869982 257886.14225994825 256465.96025892973 268766.7183010015 208853.31390369256 242920.66324772188 252948.47471065505 187264.2725463975 214531.06788967774 0.8946168772664191 1.1873728664777516 1.2020922880622855 1.1954723517752541 1.2528102383716953 0.9735341177301884 1.1323332589415136 1.1790761925481739 0.8729004819138729 1.0 17.710827065027555 2.734939945555884 24.97501305777624 1.0622068118231207 1.1545572963671515 0.15868803014400046 0.12181081341179116 718.9891041434742 4959500.275543744 0.039180327164749576 0.038336093203995204 543.1752157761056 -2.734939945555884 0.09235048454403083 SPGS(ph)ISYLPSFFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGSISYLPSFFTK 14 0 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 S(0.296)PGS(0.704)ISYLPSFFTK 349.81 7.401999999999996e-82 2228200000.0 1681100.0 1607500.0 1522700.0 1406600.0 1359400.0 1753600.0 1859700.0 1524000.0 2205900.0 1680000.0 True False 1672049.14438777 1661004.6657457289 1737082.9244543351 1584675.4157780525 1532511.532204936 1632377.7595303827 1769739.2062561 1637728.6187151964 1662285.502545617 1572780.961679638 1.0631163430425299 1.0560940818941966 1.1044658898968565 1.0075626895214398 0.9743960345045781 1.0378926241497093 1.1252292909027346 1.0412947884149095 1.0569084589950744 1.0 20.584886332574733 SPGS(ph)PPGPELPIETALDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPGSPPGPELPIETALDDR 19 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(0.042)PGS(0.958)PPGPELPIETALDDR 76.71300000000002 0.013203 100320000.0 12459.0 14002.0 10416.0 12597.0 12574.0 13470.0 10344.0 13828.0 12384.0 12230.0 True False 12391.922128325026 14468.048105612264 11882.482262504998 14191.778908400489 14175.224368063014 12538.850604969344 9843.621202082659 14859.91557716124 9332.129137098189 11449.470929370214 1.082313951864556 1.2636433766121706 1.0378193311993154 1.239513947495661 1.2380680693027213 1.095146726195413 0.8597446347351977 1.2978691914088838 0.8150707744197494 1.0 13.482993313661272 2.481365191818628 24.97091017053309 1.0342181596409838 1.1729133838843575 0.2510874442197135 0.1387518274412315 304.45742679000557 1791416.056086373 0.04604722950683211 0.039396623471140695 302.94597853657336 -2.481365191818628 0.13869522424337366 SPGS(ph)PVGEGTGSPPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGSPVGEGTGSPPK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;P35611-5;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK 358.82 9.522999999999996e-83 4606370000.0 3646630.0 3297530.0 3013760.0 2776050.0 2871570.0 3953390.0 3780350.0 3466420.0 4778510.0 3805010.0 True False 3626996.949258681 3407286.2926510167 3438071.2119284826 3127497.645365183 3237247.4183711377 3680101.4545790497 3597480.028160594 3725101.8625240987 3600910.239253479 3562171.0041670464 1.0181984371372965 0.9565195743452954 0.9651617532978087 0.8779751566408854 0.9087849557430535 1.0331063416871475 1.009912220371297 1.0457392017863418 1.010875175571615 1.0 21.764325344871516 2.7272758762771314 24.94219224405573 1.0237841790155096 0.9433097841861428 0.5111538680564958 0.03635186796672158 580.5847409882281 1283239.4015517146 0.012413992348466518 0.011801774162453548 533.6737926955414 -2.7272758762771314 -0.0804743948293668 SPGS(ph)TPTT(ph)PTSSQAPQK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 SPGS(0.996)T(0.004)PT(0.001)T(0.943)PT(0.056)SSQAPQK;SPGS(0.999)T(0.001)PTT(0.8)PT(0.192)S(0.008)SQAPQK;SPGS(0.997)T(0.003)PTT(0.927)PT(0.073)SSQAPQK;SPGS(1)TPTT(0.937)PT(0.063)SSQAPQK;SPGS(0.996)T(0.003)PT(0.008)T(0.988)PT(0.003)SSQAPQK;SPGS(0.989)T(0.011)PTT(0.959)PT(0.016)S(0.022)S(0.002)QAPQK 349.19 6.7882e-87 5209940000.0 6478750.0 5614700.0 5138880.0 4942210.0 4963560.0 6020190.0 5270860.0 4935710.0 6070290.0 5220220.0 True False 6443869.1298567895 5801581.895342178 5862389.636054311 5567893.279263799 5595639.944674954 5604028.435302921 5015888.365159457 5304037.74322754 4574348.367218653 4887061.090344804 1.318557106353288 1.1871310360339387 1.1995736348858885 1.139313214288254 1.144990791240581 1.1467072606017967 1.026360888974597 1.0853225783705756 0.9360121108893099 1.0 22.22053570832387 4.485201053763678 0.25004039344206663 0.9617128133054245 1.5086987607742233 0.8182786707498573 0.044744170513350084 3.4664956267530846 0.20567904964811573 0.06362457532999743 0.5854950266671074 30563.356961904163 -4.485201053763678 0.5469859474687988 SPGS(ph)TPTTPTSSQAPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 S(0.087)PGS(0.908)T(0.005)PTTPTSSQAPQK;S(0.037)PGS(0.963)T(0.001)PTTPTSSQAPQK 321.25 1.4380999999999996e-58 2485600000.0 762210.0 811870.0 750050.0 687300.0 767060.0 1029240.0 1148870.0 1112720.0 1430730.0 1212830.0 True False 758106.3460494913 838892.602164222 855650.5204485285 774312.1095295426 864740.5442791797 958091.0613703524 1093294.7689903989 1195756.8166776707 1078145.7622997824 1135426.1510439953 0.6676844155407482 0.7388350192505975 0.7535941634440776 0.6819572623173973 0.7615999891178065 0.8438162715288988 0.9628937716337979 1.0531348212987721 0.9495516386587142 1.0 20.11480244446867 2.441087133644938 1.7448256825025141 1.0101481309001914 0.7167712742117349 0.9309203739110232 0.03493222053843969 0.08120620645324157 0.5025567915187398 0.015767283546604307 0.012031257311205211 276.1131773786404 -2.441087133644938 -0.2933768566884565 SPHDSKS(ph)PLDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPHDSKSPLDHR 12 1 O14647 O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 1 S(0.003)PHDS(0.048)KS(0.95)PLDHR 59.68 0.058773 19421000.0 29826.0 67348.0 67858.0 65795.0 70287.0 61160.0 53886.0 36209.0 46197.0 56505.0 True False 29665.420129980124 69589.63746727431 77411.81656769058 74124.64025388667 79237.63282631172 56932.153155154025 51279.32831548976 38911.09944557647 34812.368358085034 52898.80252363567 0.5607956837345296 1.3155238710022032 1.4633944980720928 1.401253652590096 1.4979097644206145 1.0762465394129899 0.9693854278190454 0.7355761867802325 0.6580936939457287 1.0 15.690947443802434 2.2127594550202887 2.236414493242787 0.7818309917253524 1.2700709223587443 0.34639207367449143 0.2636729238671781 0.3160324415666487 3.198616621345877 0.12457539187144197 0.08251610221038022 163.21476912279536 -2.2127594550202887 0.4882399306333919 SPHLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPHLEK 6 0 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 84.244 0.056071 361620000.0 798830.0 937750.0 893030.0 894750.0 944920.0 1038570.0 1024420.0 983030.0 1200900.0 1072240.0 False True 794529.1880383565 968962.4418681554 1018760.8616440892 1008025.2582592164 1065249.961020366 966776.1004308095 974864.8909355665 1056388.6903251957 904954.286235564 1003808.7252091517 0.7915145267070774 0.9652859330010946 1.0148954039344718 1.004200534368922 1.0612081109360876 0.9631078871419192 0.9711659865602836 1.0523804623287056 0.9015206418404158 1.0 19.937052960643086 4.7330308466598945 3.053615228051476 1.0005692719656323 0.7597221778201518 0.6645054687849443 0.04324574057844569 0.19831300341018204 2.7960182086562804 0.010082686036247046 0.11497558814765865 54079.27324989546 -4.7330308466598945 -0.24084709414548044 SPHS(ph)PSPIATPPSQSSSCSDAPMLSTVHSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPHSPSPIATPPSQSSSCSDAPMLSTVHSAK 31 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 S(0.029)PHS(0.946)PS(0.025)PIATPPSQSSSCSDAPMLSTVHSAK;S(0.007)PHS(0.826)PS(0.167)PIATPPSQSSSCSDAPMLSTVHSAK 279.28 1.3484999999999992e-71 1503140000.0 361620.0 463780.0 493430.0 445070.0 467830.0 569510.0 527180.0 485980.0 625380.0 563240.0 True False 359673.07809975906 479216.6369390697 562900.6550295549 501415.8163659445 527405.377454344 530141.1141823384 501678.28937683016 522246.295356437 471263.47866266663 527293.5409859754 0.6821116705264656 0.90882326387498 1.067528067908813 0.9509234940150364 1.0002120952745968 1.0054003566799592 0.9514212680070994 0.9904280154463856 0.8937402832233838 1.0 19.008246799156503 4.687427627361239 3.3049925189932914 0.9816447769996464 0.65708175506892 0.8106219119092825 0.04350046186617407 0.10268247017603517 1.8575028146626902 0.00991570731902431 0.07828221658867945 48688.63816333333 -4.687427627361239 -0.3245630219307264 SPIIFIGTGEHIDDFEPFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPIIFIGTGEHIDDFEPFK 19 0 G3V4F7;P61011-2;P61011 G3V4F7 SRP54 Signal recognition particle 54 kDa protein 0 ; 264.38 2.4918000000000003e-31 913390000.0 1810350.0 1810600.0 1685200.0 1605190.0 1585510.0 1982950.0 1857060.0 1814700.0 2614200.0 1963940.0 False True 1800603.2767487941 1870864.7264691847 1922461.5119790183 1808406.8894161594 1787415.3004459655 1845873.3338622109 1767226.9131418795 1950122.128859884 1969965.4384853088 1838599.6677863726 0.9793340596632844 1.0175487134301826 1.0456118021024192 0.9835783836475046 0.9721612223491632 1.003956090171927 0.9611809161640804 1.060656195596827 1.0714488167275138 1.0 20.810175954363473 1.6791816947565532 8.793133216586801 1.0491342411433937 0.9967399344745843 0.37463421103629846 0.028791284064743856 0.11765727870849299 15.113964343107046 0.014005469952154138 0.007437727965168403 47.772909824910265 -1.6791816947565532 -0.0523943066688094 SPIIHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPIIHSPK 8 0 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 SPIIHS(1)PK 76.143 0.023553 152710000.0 268370.0 262560.0 210990.0 204780.0 217180.0 278080.0 282570.0 255620.0 338100.0 258070.0 True False 266925.1257387101 271299.150879128 240695.55804204382 230705.1270034336 244836.58567328792 258856.98412990896 268901.00957777415 274695.6624120589 254779.78530788887 241599.75165515716 1.1048236759767065 1.122928103280345 0.9962574729199063 0.9549063085657729 1.013397505568428 1.071429015785511 1.1130020115318038 1.1369865263940362 1.0545531754997166 1.0 17.882259446127712 2.5147170704812467 5.651430654214716 1.0937335631394773 1.0364583446705706 0.0595894592285825 0.05789688505551492 0.37346276002227347 32.427511833151925 0.020814173780821937 0.019033974007513815 327.1275119166376 -2.5147170704812467 -0.05727521846890671 SPILLGSLAHQIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPILLGSLAHQIYR 14 0 P31937 P31937 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial 0 ; 186.56 1.0484e-06 672220000.0 304370.0 413560.0 414500.0 342760.0 376090.0 495610.0 363620.0 288440.0 533660.0 413040.0 False True 302731.30573868623 427325.0945977005 472857.9971014136 386153.3808560255 423982.8322399251 461349.64724044985 346030.3114367065 309964.85746864247 402146.6436776344 386679.4335786646 0.7828999410104384 1.1051146181809204 1.2228682366816832 0.9986395637394765 1.0964711216110532 1.193106245581056 0.8948764309346476 0.8016067847207715 1.040000084710539 1.0 18.560778507895243 2.211519644289524 24.88044367824635 0.9043502467936322 1.0736542226434482 0.18677238219397496 0.12899805423440766 271.9911308496813 250257.72928930266 0.04809178147946467 0.035527628496100166 162.7494929882982 -2.211519644289524 0.16930397584981605 SPIMADLNLSLPSIPEVAS(ph)DDER ddPTM_BT-474_Trastuzumab_2h_R1 2 SPIMADLNLSLPSIPEVASDDER 23 0 Q6WKZ4;Q6WKZ4-1 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 SPIMADLNLSLPSIPEVAS(1)DDER;SPIMADLNLSLPS(0.008)IPEVAS(0.992)DDER 125.58 3.4397e-05 53074000.0 44574.0 50746.0 45397.0 47544.0 59047.0 51767.0 46482.0 40627.0 50224.0 44661.0 True False 44334.01853663698 52435.049933395225 51788.50300220238 53563.065525203834 66566.2854510113 48188.46913641038 44233.48808151643 43658.79303972585 37846.968167120445 41810.69674379419 1.0603511060412383 1.2541061024336544 1.2386424297004606 1.2810852173410385 1.5920874473561957 1.1525392516584363 1.0579466865278164 1.0442015187466582 0.905198217552735 1.0 15.351584464558892 2.3565885190992693 3.5197598586263723 1.0092566065986772 1.2871281281574387 0.5141498870147543 0.12866120391978242 0.2039224809405925 4.919472852010677 0.04933728850141766 0.039951658249808064 227.2942865545397 -2.3565885190992693 0.2778715215587615 SPIRQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPIRQDR 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 83.31299999999997 0.020403 52225000.0 209830.0 240740.0 222030.0 225220.0 206110.0 198168.0 225010.0 187330.0 272330.0 225820.0 False True 208700.29859430456 248752.8853695969 253289.89408064363 253732.82890767336 232356.88679031856 184469.11259729517 214125.40667832745 201309.51584246563 205217.9205350413 211407.97426577134 0.9871921781528316 1.1766485452288447 1.1981094609147547 1.2002046270435067 1.0990923478516061 0.8725740513713546 1.0128539730915727 0.9522323674952278 0.9707198663994188 1.0 17.689670270347133 2.9190389537619676 5.8636452832955275 0.9632134527683971 1.1476745158670623 0.6253667636732334 0.0664892547398202 0.14156738307687164 8.024210866308525 0.02006678096680727 0.021472473544835453 829.9252037791647 -2.9190389537619676 0.18446106309866517 SPIS(ph)PLSDASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPISPLSDASK 11 0 A0A5F9ZHZ1;H7C4C2;P51826;P51826-2 A0A5F9ZHZ1 AFF3 AF4/FMR2 family member 3 1 SPIS(0.999)PLS(0.001)DASK 112.5 0.0015921 157340000.0 245970.0 240520.0 222650.0 197810.0 216270.0 252070.0 259370.0 252440.0 382210.0 285150.0 True False 244645.72484983632 248525.5628025897 253997.18469150714 222852.72571808388 243810.70256728053 234644.99420895486 246823.28221038086 271278.35466434626 288019.466851607 266951.48287080246 0.9164426517467164 0.9309765210140061 0.9514732113866367 0.8348060978029433 0.9133146590733813 0.878979924312752 0.9245997795406025 1.0162084576081485 1.0789206478804274 1.0 18.026218037390954 1.7119098259175243 3.18474047523584 1.0418054411978994 0.904802150490175 0.735752358091642 0.03448511371410588 0.10426345616219815 2.3445179403126035 0.020084781067833558 0.009269211402552381 51.51216769613843 -1.7119098259175243 -0.13700329070772443 SPITSS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPITSSPPK 9 0 Q52LA3;G3V5T8 Q52LA3;G3V5T8 LIN52 Protein lin-52 homolog 1 SPIT(0.046)S(0.253)S(0.701)PPK 80.706 0.024497 239560000.0 601780.0 460850.0 396220.0 341850.0 327870.0 570420.0 521910.0 456670.0 837790.0 506280.0 True False 598540.083344044 476189.11366029247 452004.3319940218 385128.1749493298 369622.3010622567 530988.2080242469 496663.2194101855 490749.0343232728 631327.8803108445 473968.7769518847 1.2628259759920966 1.0046845632378716 0.9536584559448888 0.8125602226925307 0.779845253603655 1.120302082848277 1.0478817246238241 1.0354037189523384 1.332003100227284 1.0 18.85443249807439 1.441464148173838 5.3958533593385996 1.1739552587054998 0.9896630911690892 0.15785875797854365 0.15104225695259305 0.31041489476835366 17.80875307807768 0.1009471061116094 0.03913154480209811 27.63529775173941 -1.441464148173838 -0.18429216753641053 SPITTNHRPS(ph)PDPEQRPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPITTNHRPSPDPEQRPLR 19 2 P41212 P41212 ETV6 Transcription factor ETV6 1 S(0.001)PIT(0.002)T(0.002)NHRPS(0.995)PDPEQRPLR;SPIT(0.002)T(0.002)NHRPS(0.996)PDPEQRPLR;SPITT(0.001)NHRPS(0.999)PDPEQRPLR 117.43 5.1633e-05 809630000.0 319115.0 560690.0 521300.0 519310.0 658790.0 450030.0 674700.0 430422.0 316142.0 506190.0 True False 317396.92029700935 579352.2277057378 594694.5087791717 585054.5927539463 742683.0015457474 418920.4853566709 642062.1833957045 462542.2752786293 238233.04018576356 473884.52082893765 0.6697769316073166 1.2225599323065288 1.2549355014569972 1.2345931699363075 1.5672235933062695 0.884013861908548 1.354891656457957 0.9760653808010694 0.502723827672271 1.0 18.85417601135573 1.484481228741645 5.476535306306237 0.7436379659930586 1.180619252346927 0.2959737758059826 0.25768189821578247 0.169850996181751 11.548730822395155 0.14771705877716257 0.06263450218055211 30.512741428393248 -1.484481228741645 0.43698128635386835 SPLAPS(ph)EGAGSDVFDGDLGMGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLAPSEGAGSDVFDGDLGMGAAK 24 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 S(0.002)PLAPS(0.567)EGAGS(0.431)DVFDGDLGMGAAK;S(0.009)PLAPS(0.608)EGAGS(0.384)DVFDGDLGMGAAK 110.44 0.0012674 130792000.0 181619.0 177744.0 197891.0 159738.0 185240.0 259760.0 190086.0 177855.0 221240.0 188514.0 True False 180641.18348376782 183660.10159148325 225752.33270059287 179960.81442169403 208829.21599649996 241803.4026092677 180890.8139809631 191127.4432293902 166718.3664641153 176482.87512504484 1.0235621068377125 1.0406681184299218 1.2791741552297284 1.0197069505706144 1.183283170384302 1.370123885606129 1.0249765811713747 1.0829801083757793 0.9446716365312441 1.0 17.429168673962746 1.6371916373267559 2.0587421700307265 0.9832906560292578 1.1463965947288006 0.24450266155068534 0.11258195817279817 0.42232882583556336 3.830674134535606 0.0845154647228127 0.031959679624274547 43.37022121513999 -1.6371916373267559 0.16310593869954282 SPLAPSEGAGS(ph)DVFDGDLGMGAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLAPSEGAGSDVFDGDLGMGAAK 24 0 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 SPLAPS(0.004)EGAGS(0.996)DVFDGDLGMGAAK;SPLAPS(0.031)EGAGS(0.969)DVFDGDLGMGAAK 220.17 6.627699999999998e-33 401140000.0 617710.0 634100.0 665760.0 559530.0 591510.0 861860.0 731790.0 592130.0 742150.0 667850.0 True False 614384.3179940336 655205.6351784561 759493.2211103427 630366.4406300967 666835.2923455507 802281.6468002135 696390.5219907248 636317.7473752148 559257.0768005027 625227.2412248491 0.9826576282735637 1.0479479971072243 1.214747488645025 1.0082197304698044 1.0665486856253887 1.2831840871624636 1.113819865920211 1.0177383604217867 0.8944861002935384 1.0 19.25402111253737 1.5490335106837563 3.706219021959391 0.9483064181574594 1.1060532563609833 0.33172814283022445 0.08887633030348155 0.21562142550290253 6.632771303572363 0.05812218430566533 0.023743580101804076 35.402465699722946 -1.5490335106837563 0.15774683820352386 SPLAQMEEERR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPLAQMEEERR 11 1 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRM2 E7EPK1 SEPT7 Septin-7 0 ;;; 170.66 2.4778e-05 6841700000.0 1688180.0 2303510.0 2335890.0 2296030.0 2100710.0 2265130.0 2386580.0 1793570.0 2557000.0 2250860.0 False True 1679091.026454432 2380180.9378487994 2664763.008080145 2586707.1625827407 2368222.9666163214 2108546.8946424816 2271132.007779045 1927415.3009639175 1926861.61204458 2107208.1877418025 0.7968320530558664 1.1295423735039343 1.2645940840500662 1.2275517804222253 1.123867580048764 1.0006352988321072 1.0777919433831131 0.9146772075849986 0.9144144481089496 1.0 21.006901425759953 2.156419329678144 1.4423590349012518 0.9389232043138849 1.1196431456659057 0.2106697551954727 0.12425710817129841 0.5953803749072214 2.3782337803894125 0.07989135217772023 0.043570171287707585 143.3571405032225 -2.156419329678144 0.18071994135202085 SPLEHSS(ph)PEKEAPSPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLEHSSPEKEAPSPEK 17 1 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 S(0.021)PLEHS(0.194)S(0.785)PEKEAPSPEK 69.779 0.020554 90215000.0 134350.0 116080.0 92312.0 96976.0 96932.0 146010.0 132230.0 122990.0 204160.0 147780.0 True False 133626.67452768827 119943.65262815813 105308.72720971228 109253.15165682667 109275.71563902369 135916.67237056966 125833.52973234624 132168.13833056553 153847.5036038409 138348.55387917662 0.9658696876903239 0.8669671584200875 0.7611841559376263 0.7896949306187926 0.7898580257980652 0.9824220677381942 0.9095398990743332 0.9553272124983063 1.1120282741675775 1.0 17.077948038354002 1.98664155070685 1.0474420530851674 1.0394036708518966 0.8362566758724745 0.5392536731276042 0.07187852414312569 0.41926978307976276 0.8466309783542036 0.05946066123519521 0.02761281154147422 96.97092776139435 -1.98664155070685 -0.203146994979422 SPLELGEKLS(ph)PLPGGPGAGDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLELGEKLSPLPGGPGAGDPR 22 1 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 S(0.085)PLELGEKLS(0.915)PLPGGPGAGDPR 49.18600000000001 0.086063 127370000.0 211370.0 192100.0 176420.0 170750.0 153210.0 223100.0 229360.0 203050.0 277590.0 210200.0 True False 210232.00740541486 198493.93237309757 201258.4025298706 192366.93249260823 172720.38535318366 207677.6221209103 218264.98055971361 218202.62206700814 209181.66401543017 196784.85603872623 1.0683342795648985 1.0086849992869116 1.022733184764299 0.9775494739023588 0.8777117753369863 1.055353680671649 1.1091553738096604 1.1088384871652268 1.0629967581156972 1.0 17.586259673983427 2.4918018232305763 24.88134383177898 1.0833846872420088 0.9903537101750971 0.32600713216146937 0.053850058147931874 655.1655839111935 1110407.515081024 0.018111325143774375 0.01651728617942459 310.31432421668416 -2.4918018232305763 -0.09303097706691166 SPLIES(ph)TANMDNNQSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLIESTANMDNNQSQK 17 0 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 S(0.016)PLIES(0.967)T(0.017)ANMDNNQSQK 272.8 1.2683e-35 289930000.0 290980.0 230750.0 216070.0 191070.0 218070.0 260510.0 213510.0 250780.0 336770.0 266860.0 True False 289413.3960109174 238430.37425867934 246490.7778858923 215259.44240915173 245839.92189784447 242501.55687457797 203181.70561259336 269494.47703503695 253777.5459868019 249828.76632965973 1.158447044601037 0.954375181695691 0.9866388947405568 0.8616279284872571 0.9840336863908146 0.9706710737809384 0.8132838687778909 1.0787167586595192 1.0158059446682437 1.0 17.930580078891694 -0.9110938406578397 5.6676533048770965 1.0000000157486493 0.9762462675747234 0.0022191440365042503 0.0925388986293041 1.802872503394407e-08 3.5218057753606414e-09 0.0864204603645524 0.020369484193534258 0.12271740395283437 0.9110938406578397 -0.023753748173925837 SPLS(ph)PTETFSWPDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 SPLS(0.993)PT(0.002)ET(0.004)FSWPDVR;S(0.006)PLS(0.989)PT(0.002)ET(0.003)FSWPDVR 143.56 4.6048e-06 83027000.0 143126.0 84845.0 79780.0 79593.0 78288.0 98806.0 103319.0 105348.0 203629.0 117570.0 True False 142355.42551879352 87669.01453511452 91012.33053980894 89669.46563914593 88257.51275066931 91975.77378430584 98321.0652530914 113209.60270630462 153447.36143880562 110066.58194325893 1.2933573751947707 0.796508922029661 0.826884317955174 0.8146838400539408 0.8018556694725694 0.8356375946308645 0.8932871677961024 1.0285556315782203 1.3941321582777064 1.0 16.74801698345725 1.5222406242197712 3.8276615913941474 1.2033698624844773 0.8809553569517491 0.3410023500801175 0.1655067737088839 0.1854087598440471 5.904638626983781 0.10262135514811214 0.041065011058958 33.28439169641202 -1.5222406242197712 -0.3224145055327282 SPLSWIEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPLSWIEEK 9 0 P53004 P53004 BLVRA Biliverdin reductase A 0 120.07 0.0038566 0.0 111900.0 149220.0 124400.0 105080.0 116170.0 113710.0 123680.0 115140.0 140810.0 146880.0 False True 111297.54283325875 154186.69749460527 141914.43869581644 118383.117225905 130963.56090646407 105849.49534454821 117697.12589651791 123732.33146907334 106109.26225733172 137505.99264970547 0.8094013990851121 1.121308930058006 1.0320600285206583 0.8609306034209309 0.9524207518729155 0.7697809623046631 0.8559417929977033 0.899832284286545 0.7716700938819702 1.0 17.069134968547694 2.899450241925844 8.229071650610614 0.8568895800108755 0.965041398717122 0.18242428113629283 0.10057712238426232 0.48387107067040547 35.756104694956534 0.030011614213681564 0.03188039658653024 793.3233587676593 -2.899450241925844 0.10815181870624657 SPMFPALGEAS(ph)SDDDLFQSAKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMFPALGEASSDDDLFQSAKPK 23 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 SPMFPALGEAS(0.5)S(0.5)DDDLFQSAKPK 150.59 4.9837e-08 452200000.0 671400.0 537800.0 607860.0 526890.0 503630.0 753310.0 724890.0 685110.0 988390.0 747010.0 True False 667785.2569995533 555700.3478930342 693441.4043861653 593594.2199767514 567764.295251119 701235.4528009986 689824.3013512851 736236.3871180892 744814.5282474547 699335.182252563 0.9548858314958685 0.7946123146602176 0.9915723132255212 0.8487978798160571 0.8118629087447691 1.002717252894835 0.9864001109301505 1.0527661210274983 1.0650322579916578 1.0 19.4156245607552 2.600465614206784 5.456111341204766 1.0270911316828417 0.8803989933006793 0.58440057666406 0.059648903049085204 0.15883553807192224 6.436204432845274 0.019009771224494057 0.017824081369141744 398.5342166334186 -2.600465614206784 -0.14669213838216244 SPMFPALGEAS(ph)SDDDLFQSAKPKPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMFPALGEASSDDDLFQSAKPKPAK 26 2 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 SPMFPALGEAS(0.5)S(0.5)DDDLFQSAKPKPAK 199.04 3.0719e-25 1279700000.0 357140.0 269140.0 269390.0 209340.0 220830.0 354010.0 328140.0 331310.0 515250.0 389530.0 True False 355217.1979219846 278098.16220143443 307317.77042014454 235842.42253588635 248951.39153804284 329538.12194990355 312266.61458346865 356034.0345580911 388273.54149627266 364669.8619065887 0.9740788450814577 0.7626025379434018 0.8427287322659665 0.6467285815801748 0.6826760792253583 0.9036615206614352 0.8562994840068705 0.9763187796673207 1.0647261593439001 1.0 18.47623144769307 1.8757233768365213 1.4237896231617273 1.033410252614808 0.7843762086978372 0.5296130772052177 0.09085444540079306 0.3196101265645713 1.2106880151443247 0.06867492763238255 0.029533971498323267 75.1144301474601 -1.8757233768365213 -0.2490340439169707 SPMFPALGEASS(ph)DDDLFQSAKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMFPALGEASSDDDLFQSAKPK 23 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 SPMFPALGEAS(0.246)S(0.754)DDDLFQSAKPK 142.2 1.06e-07 457550000.0 1091700.0 968510.0 930370.0 822960.0 898320.0 1196400.0 1161400.0 1168800.0 1743000.0 1247000.0 True False 1085822.4084992735 1000746.2698733415 1061358.0090789911 927146.6516200104 1012715.7272402055 1113695.6840226657 1105218.6450211506 1256021.7910461416 1313461.0050034034 1167415.3923895883 0.9301080108912203 0.8572323753800343 0.9091519745225324 0.7941874483273939 0.8674853302792871 0.95398406709632 0.9467226937610211 1.075899631985479 1.1251016678089825 1.0 20.15488656473828 2.065620722109122 1.5374268151904353 1.0773670912003717 0.8720554817921096 0.7352238818413359 0.04898725436413613 0.1866166976477252 0.8316186725886744 0.0305244334267549 0.015566424210297141 116.31098191143849 -2.065620722109122 -0.2053116094082621 SPMFPALGEASS(ph)DDDLFQSAKPKPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMFPALGEASSDDDLFQSAKPKPAK 26 2 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 SPMFPALGEAS(0.311)S(0.689)DDDLFQSAKPKPAK 281.19 3.8877999999999994e-61 696350000.0 867480.0 642230.0 650900.0 547590.0 585670.0 883910.0 829410.0 818600.0 1186300.0 890150.0 True False 862809.5840660881 663606.2373137674 742541.0622757783 616914.8378543328 660251.6029619417 822807.3822003296 789288.269646112 879688.0887665747 893952.2606055874 833339.8649042434 1.035363385820059 0.7963212433021195 0.8910422908438461 0.7402920031015444 0.7922957136315677 0.9873611198173939 0.947138500012605 1.055617432711751 1.0727343047584899 1.0 19.66854547112402 2.4420900606507625 2.1073637181293594 1.031237943081462 0.8458756999219196 0.486082135896887 0.08175098892110816 0.25931537472004884 2.3449355519682196 0.03347668959624425 0.026747179658822576 276.7515491995334 -2.4420900606507625 -0.18536224315954242 SPMVEQAVQTGS(ph)ADNLNAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPMVEQAVQTGSADNLNAK 19 0 Q9BX40;Q5TBQ1;Q5TBQ0;Q5TBP9;Q9BX40-3 Q9BX40 LSM14B Protein LSM14 homolog B 1 SPMVEQAVQTGS(1)ADNLNAK 356.83 5.317299999999998e-91 91605000.0 156140.0 114000.0 127880.0 113430.0 128330.0 176600.0 154880.0 164480.0 237200.0 187440.0 True False 155299.35958878475 117794.42108554472 145884.39244711402 127790.22636976022 144672.06482849744 164392.057671684 147387.8627009438 176754.3328125166 178745.23831715834 175477.4187245423 0.8850105085747112 0.6712796549079278 0.8313570686614539 0.728243139764669 0.8244483300475149 0.9368274212520775 0.8399249531491433 1.0072768000421681 1.0186224507766763 1.0 17.42092586399702 2.23507152318434 0.8553433057206582 1.02016784729967 0.7719280166704755 0.6528970415598381 0.06623665025979171 0.3418380078424449 0.47627138426758503 0.048635117886066864 0.028424799660549442 171.81913297266814 -2.23507152318434 -0.24823983062919452 SPPAS(ph)PESWK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 SPPAS(0.999)PESWK;SPPAS(0.999)PESWK;SPPAS(1)PESWK;S(0.001)PPAS(0.999)PESWK;S(0.001)PPAS(0.999)PESWK 129.34 0.00032059 2086100000.0 4500860.0 4386080.0 3914570.0 3760560.0 3842320.0 5707850.0 5628170.0 4678780.0 6873540.0 5490770.0 True False 4476627.869852559 4532068.021358645 4465707.429947604 4236646.510421093 4331616.676785105 5313279.764333643 5355913.915402707 5027934.32196344 5179648.1677172035 5140344.357715299 0.8708809290438785 0.8816662281693882 0.8687564721699799 0.8241950763594623 0.8426705246475656 1.033642766823351 1.0419367930796022 0.9781318083129703 1.0076461433839372 1.0 22.293433579818632 2.740356798338283 24.999892838038978 1.0106837387966103 0.857729188156233 0.9241481824306109 0.022148865221077178 44.712070947077486 622321.6884046335 0.007688301816108307 0.007779025458120165 549.9925393622585 -2.740356798338283 -0.15295455064037733 SPPHCELMAGHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPHCELMAGHLR 13 0 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 ; 129.71 8.706700000000001e-05 340020000.0 35935.0 48457.0 49453.0 42109.0 36099.0 41588.0 44898.0 35475.0 45982.0 45475.0 False True 35741.529952753815 50069.861952124906 56415.55254681837 47439.995082466965 40695.993674463694 38713.11944762175 42726.11221298406 38122.32463839995 34650.35222723262 42572.746566893744 0.8395401479816161 1.176101285207218 1.3251565166972181 1.1143278014239792 0.9559165653199955 0.909340424790131 1.0036024372035601 0.8954631240081978 0.8139092499655193 1.0 15.377642547672734 3.219290405122646 4.26677677477307 0.9242795530302363 1.1355017437128863 0.34838884551542604 0.1227348915176945 0.21544042319087356 8.976209860976967 0.036292675827753 0.04619545727715095 1656.8775181385604 -3.219290405122646 0.2112221906826499 SPPHHS(ph)GFQQYQQADASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPHHSGFQQYQQADASK 18 0 E9PD50;B1ALB4;Q92540-2;Q92540;Q92540-5;Q92540-4 E9PD50 SMG7 Protein SMG7 1 S(0.102)PPHHS(0.897)GFQQY(0.001)QQADASK 140.02 2.1759e-07 296360000.0 174960.0 232410.0 230730.0 236240.0 278900.0 326250.0 312360.0 200600.0 274520.0 282780.0 True False 174018.03479988346 240145.62635518837 263214.77845888806 266147.9597777674 314416.26183018676 303697.1054098925 297249.95346892276 215569.79062616013 206868.2243795375 264732.73829986184 0.6573347743745008 0.9071247776056177 0.9942660667859885 1.0053458498823917 1.1876742704714087 1.1471837875446136 1.122830351009435 0.8142921499266366 0.781422901104202 1.0 18.014177091870394 4.749203161637615 1.939873810543462 1.0082478328289282 0.5436366619854203 0.42091833059067996 0.12404334532276629 0.894971789054764 3.4742186858040123 0.03617514250892536 0.7530762190767398 56131.049396684364 -4.749203161637615 -0.4646111708435079 SPPLS(ph)PVGTTPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPLSPVGTTPVK 13 0 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 S(0.006)PPLS(0.994)PVGTTPVK;SPPLS(0.706)PVGT(0.284)T(0.01)PVK 141.59 4.1873e-05 151311000.0 468980.0 523590.0 458620.0 457340.0 457510.0 525920.0 514010.0 469560.0 613890.0 538490.0 True False 466455.0637885767 541017.3766331614 523189.7096034991 515239.19710787386 515771.1866257758 489564.38828251493 489145.3725911164 504600.95157736656 462605.03520455456 504123.10717551614 0.9252800697869521 1.073185039393166 1.0378213221266699 1.0220503479688494 1.0231056249643489 0.971120707053937 0.9702895297374554 1.0009478724443472 0.9176429896189888 1.0 18.943416558209798 2.7393888860021143 23.864297786508907 0.9743226243434658 1.0209657759111264 0.22124915076040286 0.04096315586580965 57.916345811116834 1668716.0062616868 0.012272597014457933 0.012347318258922012 548.7681356270933 -2.7393888860021143 0.046643151567660524 SPPMELQPPVS(ph)PQQSECNPVGALQELVVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPMELQPPVSPQQSECNPVGALQELVVQK 30 0 H3BV98;F8VSA1;Q15633-2;Q15633;F8VW32;F8VZ57 H3BV98 TARBP2 RISC-loading complex subunit TARBP2 1 SPPMELQPPVS(0.995)PQQS(0.005)ECNPVGALQELVVQK 114.03 9.7621e-05 24289000.0 40603.0 36864.0 34485.0 34432.0 35694.0 42664.0 38695.0 36579.0 44765.0 40069.0 True False 40384.39795941738 38090.995955241415 39340.188251006606 38791.08766960748 40239.419325086776 39714.73810025332 36823.17502074518 39308.710724398356 33733.26557026811 37511.7621152032 1.0765796028294263 1.0154413924427041 1.048742741814903 1.0341046509752145 1.0727147181597763 1.0587276059782134 0.9816434351352706 1.0479036043062042 0.8992716862158896 1.0 15.19505541474703 1.2562912230888321 24.99871635710815 0.9496358397981952 1.0400507928640137 0.53125318681352 0.03465952830840892 148.81441856315894 209817.6933637471 0.02174766827303503 0.007902899082097719 18.042271886132763 -1.2562912230888321 0.09041495306581848 SPPS(ph)TGSTYGSSQKEESAASGGAAYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.121)PPS(0.436)T(0.436)GS(0.004)T(0.004)YGSSQKEESAASGGAAYTK 140.78 1.323e-07 3329900000.0 1329900.0 1259100.0 981890.0 878850.0 1233600.0 1406000.0 1397400.0 1317000.0 1791000.0 1648400.0 True False 1322739.9661657803 1301008.382357978 1120131.5772591247 990112.3198894802 1390691.6478799537 1308806.529367996 1329802.4234136012 1415281.2275904932 1349632.0481704494 1543197.7007337597 0.8571422608631699 0.8430600834483971 0.7258509889734313 0.6415978454469584 0.9011752980312941 0.848113322580564 0.8617187692680638 0.9171094714031489 0.8745684674936506 1.0 20.55749146830175 1.746834623911919 0.6007302400954372 0.9805647865933566 0.7797383867854597 0.44889733592681136 0.07012194522897688 0.7126041605438074 0.5499695525932607 0.07051141567655166 0.03995055161014068 55.825757395151 -1.746834623911919 -0.20082639980789685 SPPS(ph)TGSTYGSSQKEESAASGGAAYTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPSTGSTYGSSQKEESAASGGAAYTKR 28 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.034)PPS(0.931)T(0.034)GSTYGSSQKEESAASGGAAYTKR 165.1 3.6422e-12 617420000.0 224340.0 299760.0 273210.0 301540.0 267470.0 333310.0 368610.0 288910.0 571170.0 415190.0 True False 223132.17836651692 309737.3303912533 311675.593216109 339714.9330824076 301530.71908110485 310269.0642273443 350778.926073056 310469.9312552543 430412.8067858828 388692.2187379573 0.5740587735226694 0.7968704168993601 0.8018570431589467 0.8739946844972255 0.7757570245685477 0.7982384243110275 0.9024593474291773 0.7987552008715726 1.107335794329477 1.0 18.568268700970297 6.858031717355003 0.14364690175774075 1.0583840427673614 7.90722779813919e-12 0.5852716930094586 0.08727279473544725 41.03287077521403 0.5274546756637133 0.3674270475483216 8.508186951709142 7211601.449616865 -6.858031717355003 -1.0583840427594542 SPPST(ph)GSTYGSSQKEESAASGGAAYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.147)PPS(0.117)T(0.725)GS(0.01)TYGSSQKEESAASGGAAYTK 183.81 2.275e-17 4356600000.0 533980.0 427380.0 372060.0 390910.0 338400.0 475130.0 512850.0 501530.0 596460.0 490730.0 True False 531105.1110107559 441605.0849433341 424442.8139965068 440399.16591909435 381493.2341460572 442285.3814357154 488041.4862227461 538956.7153177375 449470.42515452136 459411.1912649092 1.156056102047601 0.9612414615487509 0.9238843590811903 0.9586165385012312 0.8303960404092064 0.9627222624202061 1.0623195418444384 1.1731466833313604 0.9783619417650282 1.0 18.80942647565794 2.2168387001656207 5.2454814404576515 1.0804262810715866 0.9565338625275179 0.15789115616584437 0.090771948931318 0.23757632163044295 17.80067785855546 0.03451511042231432 0.02617784206560196 164.75503668071187 -2.2168387001656207 -0.12389241854406863 SPPVLGSAAAS(ph)PVHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPVLGSAAASPVHLK 16 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 SPPVLGSAAAS(1)PVHLK 163.85 4.8855e-09 192600000.0 140590.0 149540.0 145750.0 138760.0 125470.0 168470.0 185350.0 168070.0 190920.0 177240.0 True False 139833.0790610174 154517.34850116118 166270.33311828945 156327.00177261655 141447.8607810453 156824.0654357226 176383.91239424012 180612.23684216713 143870.3241969303 165928.39145720165 0.8427314809297414 0.931229111209797 1.002060778496584 0.9421353416358429 0.8524632797246716 0.9451309933066677 1.0630122479053579 1.08849507462834 0.8670627306963267 1.0 17.34020123661983 2.386831132244871 6.081844965614684 1.021394118019053 0.9193935173623816 0.2595869671918405 0.06957687136432725 0.25693706792353976 14.10259856783227 0.024976604841569154 0.020808985159942544 243.68631028600439 -2.386831132244871 -0.10200060065667149 SPPVRPNESLSGS(ph)WK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPPVRPNESLSGSWK 15 1 Q6ZNC4;E5RGL7 Q6ZNC4 ZNF704 Zinc finger protein 704 1 SPPVRPNESLS(0.083)GS(0.917)WK;SPPVRPNES(0.002)LS(0.229)GS(0.769)WK 124.73 5.743e-05 1147620000.0 489330.0 507350.0 404260.0 464280.0 446320.0 547140.0 566630.0 497260.0 671660.0 551300.0 True False 486695.5016496742 524236.8380504479 461176.2941090897 523057.8003962995 503156.20645410195 509317.4996290214 539219.9421631957 534368.0662351167 506138.3927828948 516115.5620083233 0.9429971453599094 1.015735383003223 0.8935523903107041 1.0134509379274719 0.9748905932931115 0.9868284103799367 1.0447659048779074 1.0353651499206276 0.9806687301064803 1.0 18.977334606112358 2.8415608784797395 1.327907270890949 1.0195209555274967 0.9626003037590714 0.25684348689551695 0.036769481222535656 0.5247519681226693 1.9034815605782098 0.01511050650955293 0.015713967878069755 694.3219234680034 -2.8415608784797395 -0.05692065176842531 SPPYT(ph)AFLGNLPYDVTEESIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPPYTAFLGNLPYDVTEESIK 21 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VYE9;F8VRU1 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.331)PPY(0.292)T(0.377)AFLGNLPYDVTEESIK 67.43 0.07923200000000001 12979000.0 16931.0 14410.0 11327.0 12937.0 10260.0 15833.0 12631.0 12466.0 24235.0 14796.0 True False 16839.845377210946 14889.628138971053 12921.743143951053 14574.822873539504 11566.550184215565 14738.501976873013 12019.990274894244 13396.276221065371 18262.6089823623 13851.706612507092 1.215723509621968 1.0749309493406967 0.9328628959180849 1.0522041277122842 0.8350270842274268 1.064020657466511 0.8677624072719717 0.9671209906344319 1.3184374671834647 1.0 13.757776115370518 4.61055478910717 3.0275496854344 0.9928307262263616 1.2247215361011714 0.19883247598470621 0.1265531700792128 0.43297536576347484 6.3856288165574915 0.029848962271681292 0.202021004537784 40790.10179234181 -4.61055478910717 0.2318908098748098 SPQLS(ph)LSPRPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQLSLSPRPASPK 14 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 2 S(0.014)PQLS(0.564)LS(0.421)PRPAS(1)PK 65.47 0.033046 377010000.0 343780.0 262190.0 247760.0 237570.0 209000.0 312870.0 291740.0 286620.0 462970.0 340830.0 True False 341929.1266775489 270916.8356527984 282642.45443147473 267646.33764139906 235614.91115994667 291242.0333167601 277627.42164497223 308009.03982686944 348877.2469801641 319077.93760075624 1.0716163243645664 0.8490616358182087 0.8858100831312533 0.8388117951805538 0.7384243264564345 0.9127614259597427 0.8700928172362432 0.9653097363700004 1.0933919455650174 1.0 18.283549332460616 1.5391752949852433 3.174228784750173 1.0455888586633526 0.8740154908980263 0.39965723567054223 0.08117004802035743 0.20429528917192347 4.530253225986536 0.05551405475503048 0.02127236464913967 34.60790380813318 -1.5391752949852433 -0.17157336776532628 SPQLSLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQLSLSPR 9 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 SPQLSLS(1)PR 93.091 0.010106 137090000.0 243660.0 229390.0 232600.0 189420.0 185820.0 233190.0 226040.0 223140.0 261150.0 249030.0 True False 242348.16163317076 237025.107480817 265348.0582045569 213400.55257832984 209483.07555857048 217070.12417021542 215105.5816433452 239791.839881961 196793.0817307162 233136.69219469072 1.039511023990971 1.0166786928712153 1.1381651498382188 0.91534520186175 0.8985418536505301 0.9310852021051313 0.9226586326605001 1.0285461186938032 0.8441102937429332 1.0 17.830816555186153 3.721615951933955 24.989157616966736 0.9386862347208715 1.0599743337875165 0.528880547765663 0.05626445576227421 637.6657799473463 940398.0347064714 0.014912917637082862 0.023164203666946975 5267.638363732873 -3.721615951933955 0.12128809906664495 SPQLSLS(ph)PRPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQLSLSPRPASPK 14 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 2 S(0.005)PQLS(0.016)LS(0.98)PRPAS(1)PK;S(0.005)PQLS(0.054)LS(0.942)PRPAS(1)PK 88.98299999999998 0.0036017 1046360000.0 2068900.0 1427590.0 1285290.0 1278160.0 1259120.0 1790220.0 1721160.0 1636940.0 2472800.0 1899470.0 True False 2057761.2722763978 1475106.4701536212 1466247.660059048 1439974.9249473044 1419461.468611062 1666466.3051245904 1637900.915330296 1759096.775012896 1863411.5738223845 1778244.198381917 1.157187114204462 0.8295297527166793 0.8245479790645375 0.809773441835258 0.7982376491950187 0.9371414267179744 0.9210776094873111 0.9892323993597482 1.0478940831174728 1.0 20.76202202600216 1.8473157625392698 1.5816173311968782 1.0241147285710608 0.8771569237003419 0.22556988564777813 0.09919664695903235 0.5262760019932275 2.487511585109452 0.07128042876895865 0.030554315711499178 70.35836886348427 -1.8473157625392698 -0.14695780487071886 SPQLSLSPRPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQLSLSPRPASPK 14 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 SPQLSLSPRPAS(1)PK 78.794 0.012647 585240000.0 333960.0 378910.0 313180.0 356140.0 324510.0 443020.0 415630.0 364940.0 700150.0 398150.0 True False 332161.9964664438 391521.79029406776 357273.02179064107 401227.28748414357 365834.4249785374 412395.0701569053 395524.38903921284 392173.675927771 527607.4140293357 372739.72612663533 0.89113655772123 1.0503892202814233 0.9585053503775458 1.0764274891049037 0.9814742012614135 1.1063888318059163 1.0611275410575276 1.0521381233041234 1.4154847928661227 1.0 18.507809062303213 2.30958832206959 0.8384237709211018 1.1609899454442372 0.9866453947654594 0.2750862874546911 0.11344149428108832 0.8631410952701392 1.174176985675074 0.0833970049315747 0.05209704177148716 203.98034503821333 -2.30958832206959 -0.17434455067877774 SPQNDDHSDT(ph)DSEENRDNQQFLTTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQNDDHSDTDSEENRDNQQFLTTVK 26 1 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 SPQNDDHS(0.365)DT(0.617)DS(0.018)EENRDNQQFLTTVK 120.33 0.000334 131350000.0 45625.0 46816.0 46832.0 41705.0 42068.0 52634.0 54597.0 47056.0 53374.0 62022.0 True False 45379.36006941403 48374.242259130384 53425.53852895878 46984.84872389004 47425.11044342887 48995.53546710887 51955.934529205995 50567.55766552641 40220.692874957895 58063.70286029434 0.7815443699586333 0.8331236189934781 0.9201193843510922 0.8091948396219087 0.816777230992954 0.8438238185565918 0.8948091831865409 0.8708979134037623 0.6926994127765486 1.0 15.825348958538498 2.467349418674944 24.429748152695364 0.8586563645027862 0.8352658549458093 0.0346514612853438 0.07751699850662226 883.7499443921109 2209368.172404343 0.02596691335693065 0.02175529804320663 293.32522918628223 -2.467349418674944 -0.023390509556976857 SPQNSHSHST(ph)PSSSVRPNSPSPTALAFGDHPIVQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQNSHSHSTPSSSVRPNSPSPTALAFGDHPIVQPK 36 1 B3KRP1;Q9UKI8;Q9UKI8-4;Q9UKI8-5;Q9UKI8-2;C9JWT6 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 SPQNSHSHS(0.057)T(0.432)PS(0.057)S(0.057)S(0.057)VRPNS(0.338)PSPTALAFGDHPIVQPK 149.0 1.6664e-13 604610000.0 66032.0 106630.0 141510.0 129300.0 158280.0 154970.0 165080.0 42784.0 122500.0 124820.0 True False 65676.49104884488 110179.1150908039 161433.3779730304 145669.36674257246 178436.01980093948 144257.28866014103 157094.44973315968 45976.759332749956 92311.51641590186 116853.88073622173 0.5620394516216254 0.9428793840361621 1.3814977898546605 1.2465941723527085 1.5270012315956303 1.2345100372470978 1.3443665605575768 0.39345513425039663 0.7899739044549133 1.0 16.834346121488093 1.7481257465485462 24.999999999999996 0.6812450602163046 1.194198718201454 0.3329130340228703 0.28840868748497883 2.4449191577763245 6404.002760720822 0.13750367350337617 0.07625279058958785 55.99196983681152 -1.7481257465485462 0.5129536579851494 SPQPVCS(ph)PAGSEGTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQPVCSPAGSEGTPK 16 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 SPQPVCS(1)PAGSEGTPK;SPQPVCS(1)PAGSEGTPK 271.73 3.8772e-35 729490000.0 818150.0 599180.0 510240.0 528790.0 518500.0 812020.0 789440.0 713390.0 1102210.0 699380.0 True False 813745.1713050111 619123.3440880415 582077.3569144157 595734.7597819398 584527.9016097239 755886.9686894729 751251.7712463385 766626.7843210193 830585.1143573166 654744.9696306578 1.2428429526752156 0.9455946556371245 0.8890138663344997 0.9098729847714512 0.8927566132191235 1.1544754121835703 1.1473960184377137 1.170878463951352 1.2685628036605618 1.0 19.32057354490916 2.722645071784273 23.34014915890912 1.1595682817512838 0.9658180481304482 0.3611365872668175 0.11364961891632566 339.28572136341825 497561.1624629151 0.0364840738922164 0.0345256554368503 528.0135550416886 -2.722645071784273 -0.19375023362083554 SPQPVPS(ph)PRPQSQPPHSSPSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 SPQPVPS(0.999)PRPQS(0.001)QPPHSSPSPR;SPQPVPS(0.996)PRPQS(0.003)QPPHSS(0.001)PSPR 145.19 5.7178e-08 378820000.0 90087.0 180482.0 167110.0 179776.0 195808.0 154699.0 184151.0 151506.0 128550.0 180454.0 True False 89601.98160160665 186489.23426632697 190637.63545384145 202535.62316715132 220742.98815505672 144005.02225227555 175242.91260486486 162812.14705187938 96870.57498174834 168937.271225558 0.5303861069353595 1.1038963333161353 1.128452200457944 1.1988806359772095 1.3066565273232682 0.8524171203168426 1.037325341729285 0.9637432040351793 0.5734115052232067 1.0 17.366128127503988 1.4360653942305757 6.428160214977226 0.7777791427623018 1.03667270416799 0.1460842251708332 0.22227761997765697 0.3105400168055621 26.412009172587165 0.13916280852319238 0.054814521747043536 27.293887317063298 -1.4360653942305757 0.2588935614056882 SPQPVPSPRPQSQPPHSS(ph)PSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 SPQPVPS(0.203)PRPQS(0.003)QPPHS(0.207)S(0.585)PS(0.002)PR 88.39399999999998 0.0016239000000000002 269660000.0 69545.0 134290.0 146550.0 173100.0 164600.0 156020.0 169530.0 132070.0 120860.0 155620.0 True False 69170.57744717582 138759.76146998076 167182.96616456492 195014.4422516569 185560.83433936452 145234.70463157503 161329.1862325091 141925.73403787127 91075.67244102778 145688.19836701488 0.47478504245706055 0.9524433895490962 1.1475395264577357 1.3385740536126358 1.2736847350662082 0.9968872308085147 1.1073593334313308 0.9741745428159851 0.6251410441056572 1.0 17.15252448947153 -2.014085158264153 8.78187523594589 0.9823701903510323 1.0132603052109457 0.0 0.254287651291219 0.18602713297913956 0.00029836784909229345 0.5218260063316168 0.058977539481803204 0.00968088010934681 2.014085158264153 0.03089011485991333 SPQQLLLQGS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQQLLLQGSSR 12 0 O14795;O14795-2;A0A1B0GUS7;A0A0U1RRL2;B1AM27 O14795 UNC13B Protein unc-13 homolog B 1 SPQQLLLQGS(0.634)S(0.366)R 112.17 0.0013662 141340000.0 266520.0 255740.0 230880.0 323960.0 316300.0 266260.0 203520.0 195090.0 271550.0 255530.0 True False 265085.0859331557 264252.15130190545 263385.8971550647 364973.3027836325 356578.9301430195 247854.07290862192 193674.9600780994 209648.606446947 204630.1410835768 239221.8566297603 1.1081139895315815 1.1046321394908498 1.1010110065431968 1.5256687157498974 1.4905783909824375 1.0360845635113582 0.8096039501016286 0.8763773068253403 0.8553990173242384 1.0 17.86798968257999 2.49820258133926 6.326523562415958 0.877593999770085 1.2633709931874288 0.600231685571134 0.1470939515287365 0.12665343518997899 19.593552363305015 0.05447889145430292 0.049149908642087445 314.92169577153413 -2.49820258133926 0.38577699341734384 SPQQLLLQGSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 SPQQLLLQGSSR 12 0 O14795;O14795-2;A0A1B0GUS7;A0A0U1RRL2;B1AM27 O14795 UNC13B Protein unc-13 homolog B 1 SPQQLLLQGS(0.288)S(0.712)R;SPQQLLLQGS(0.133)S(0.867)R;SPQQLLLQGS(0.208)S(0.792)R 142.66 6.4563e-05 722850000.0 855970.0 889460.0 804900.0 1012850.0 1053940.0 936880.0 699110.0 645490.0 948240.0 861470.0 True False 851361.5526272069 919065.1384100756 918222.923683783 1141076.706150151 1188153.0118082014 872115.6907782991 665291.3784404487 693659.7415318048 714558.9577650188 806490.2470584261 1.0556377535034593 1.139586178211395 1.1385418819792157 1.4148673344929934 1.4732391571278676 1.0813716519936027 0.8249217902721292 0.8600968753953855 0.8860106620895722 1.0 19.621297561313675 2.4406962797670455 4.944853711455249 0.8807811465956122 1.2458894623944712 0.6336652898608112 0.12569064194990887 0.12849938966646768 7.613215454950867 0.048274547760455526 0.04083687545974303 275.8647943974976 -2.4406962797670455 0.36510831579885894 SPQTLAPVGEDAMKT(ph)PS(ph)PAAEDAREPEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPQTLAPVGEDAMKTPSPAAEDAREPEAK 29 2 Q92797 Q92797 SYMPK Symplekin 2 S(0.048)PQT(0.052)LAPVGEDAMKT(0.902)PS(0.999)PAAEDAREPEAK 65.05199999999999 0.019432 129000000.0 309380.0 218210.0 217100.0 165560.0 199530.0 290280.0 304630.0 273110.0 451750.0 299610.0 True False 307714.3324553495 225472.98793926975 247665.79293297185 186519.87902475096 224938.962793034 270213.62684562005 289893.88310039055 293490.8550244799 340422.26563986694 280488.633290974 1.097065249471739 0.8038578436986714 0.8829797843395946 0.664981952517336 0.8019539335830634 0.9633674765183983 1.0335316611552658 1.046355610139886 1.2136757972887935 1.0 18.09758278171646 2.3833851304700886 2.2322137684011882 1.0802757590996759 0.8404512233243704 0.4605039004536584 0.11357290786436235 0.27118167363941365 2.767909316471622 0.047633775546095145 0.036728459021671045 241.76038047243605 -2.3833851304700886 -0.2398245357753055 SPQYCQVIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPQYCQVIHR 10 0 Q13228;Q13228-4;A6PVX1;F2Z2W8;F8WCR4;C9JVL0 Q13228 SELENBP1 Selenium-binding protein 1 0 ; 89.54799999999999 0.011438 231460000.0 141865.0 196325.0 192332.0 193764.0 161100.0 196518.0 163484.0 128183.0 244553.0 185400.0 False True 141101.21460268332 202859.55894403148 219410.67382028708 218294.5025329296 181615.13008548997 182933.17321361275 155575.65435047194 137748.66636008504 184286.18999231065 173567.6132710743 0.8129466779168897 1.168763890456969 1.2641222039368372 1.2576914461109847 1.0463653135671527 1.053959144600966 0.8963403449438295 0.7936311605838126 1.0617544743471024 1.0 17.40513824864678 2.49095403810626 2.248655406332917 0.9070235754406708 1.1319076374093289 0.23903521025279162 0.13770726960350527 0.35702620563698084 3.644913041416456 0.055591858634357116 0.046665064264859335 309.7091513049217 -2.49095403810626 0.22488406196865807 SPRPAS(ph)PASNVVVLPSGSTVYVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPRPASPASNVVVLPSGSTVYVK 23 1 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 S(0.163)PRPAS(0.804)PAS(0.033)NVVVLPSGSTVYVK;S(0.041)PRPAS(0.918)PAS(0.041)NVVVLPSGSTVYVK;S(0.011)PRPAS(0.987)PAS(0.003)NVVVLPSGSTVYVK 160.78 1.1230999999999998e-11 2321410000.0 1903310.0 2348390.0 2190680.0 2060280.0 2056430.0 2294420.0 2626140.0 2033490.0 2963010.0 2615890.0 True False 1893062.79043762 2426554.741518266 2499108.702268093 2321111.2367547317 2318304.171084447 2135812.145883725 2499103.5753709734 2185239.349652991 2232815.8877998474 2448941.6606238945 0.7730126122952808 0.9908585331102068 1.0204851926245633 0.9478017684436808 0.9466555322080779 0.8721368010618936 1.0204830991091474 0.8923198885416803 0.9117472758542616 1.0 21.22372697534893 4.7464435613978635 24.58514711629973 0.9516490574685682 0.7730125018674548 0.5465523600131865 0.04982547247493148 613.6614848667062 1913816.6218297952 0.01187827447257937 0.12925008243175132 55775.511454162006 -4.7464435613978635 -0.17863655560111336 SPRPGSS(ph)APEHS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPRPGSSAPEHSPR 14 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 2 S(0.164)PRPGS(0.327)S(0.509)APEHS(1)PR 57.36600000000001 0.066786 259540000.0 104010.0 121620.0 93704.0 128710.0 147830.0 131090.0 112700.0 113450.0 133640.0 135230.0 True False 103450.02171659742 125668.0481791575 106896.70871023125 145004.67280306623 166655.27424294222 122028.05685266739 107248.2704441914 121916.21508742706 100706.21268425397 126599.50562377207 0.8171439628210697 0.9926424875039981 0.8443690848833683 1.14538103516763 1.3163975121530707 0.9638904690142306 0.8471460446529026 0.9630070392986937 0.7954708210593833 1.0 16.949912245431147 -0.5380958117524443 5.896162750315195 0.9999999956205896 0.9721461839829891 0.0027271393539833877 0.1537149843670527 0.0 1.953234566984915e-10 0.15457304272001654 0.036433215836769145 0.28967044615804205 0.5380958117524443 -0.02785381163760048 SPRPGSSAPEHS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPRPGSSAPEHSPR 14 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 SPRPGSSAPEHS(1)PR;SPRPGSSAPEHS(1)PR 97.095 0.0018838 138121000.0 123287.0 193767.0 194581.0 202308.0 205446.0 180334.0 187950.0 163064.0 174121.0 191941.0 True False 122623.23649047331 200216.41746037488 221976.31347162908 227920.17205689347 231608.33032615515 167867.93504057484 178858.14046127562 175232.66370221443 131211.21265186308 179691.16105104232 0.6824110644799132 1.1142251866440012 1.2353212710811936 1.2683994622982675 1.2889244466530296 0.9342025175789864 0.9953641537797728 0.9751879985484571 0.7302040450091576 1.0 17.455159919336676 2.697992413786414 22.77553862536087 0.9353271600081352 1.1325438852459122 0.22551053373079333 0.17546584072728272 283.0086338044345 158883.89022467667 0.05861683641806972 0.05526584331938297 498.8757730706301 -2.697992413786414 0.197216725237777 SPS(ph)FASEWDEIEK ddPTM_BT-474_Trastuzumab_2h_R1 7 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 SPS(1)FASEWDEIEK;SPS(1)FASEWDEIEK;S(0.008)PS(0.992)FASEWDEIEK;SPS(1)FASEWDEIEK;SPS(1)FASEWDEIEK;SPS(1)FASEWDEIEK;S(0.368)PS(0.632)FASEWDEIEK 366.6 4.1376e-91 4099292000.0 3882282.0 3179266.0 2732468.0 2656902.0 2785264.0 3510985.0 3491325.0 3371066.0 4865048.0 3550503.0 True False 3861380.225074079 3285085.9469031184 3117175.7433623793 2993265.520781703 3139950.860846878 3268278.870919698 3322436.2715933113 3622632.062846301 3666122.108703266 3323906.858801449 1.161699286142583 0.9883206980377516 0.9378047808735489 0.9005262926834927 0.9446566929312505 0.9832642759725795 0.9995575726785955 1.0898717132382487 1.102955727834448 1.0 21.664448525371082 1.8632352692092014 4.21739218378579 1.0722333652529163 0.9790537441017457 0.19410572154590022 0.07004813121127698 0.3295925285136768 9.067233206795288 0.03491042575751562 0.0196104704904583 72.98527844117541 -1.8632352692092014 -0.09317962115117062 SPS(ph)FGAGEGLLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SPSFGAGEGLLR 12 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.057)PS(0.943)FGAGEGLLR;S(0.004)PS(0.996)FGAGEGLLR;S(0.028)PS(0.972)FGAGEGLLR;S(0.016)PS(0.984)FGAGEGLLR;S(0.012)PS(0.988)FGAGEGLLR;S(0.154)PS(0.846)FGAGEGLLR 232.52 9.163e-13 1527985000.0 1467290.0 1258950.0 1248098.0 1606204.0 1246911.0 1237516.0 1231746.0 1217708.0 1559923.0 1420047.0 True False 1459390.2736712461 1300853.389698654 1423819.3497377094 1809549.2617121942 1405697.724829475 1151969.431719319 1172161.740253335 1308579.554355934 1175500.8785472875 1329418.384696598 1.0977659783186393 0.9785131638566417 1.0710092218731093 1.3611585957758305 1.0573779789800979 0.8665213637633147 0.88171019277791 0.9843248516941341 0.8842219214649738 1.0 20.342363779684312 2.9333949454544657 6.263897436092746 0.9263901102282017 1.1238449577155678 0.4905907833332117 0.09861733251240733 0.21189681559864526 15.788223467775708 0.031764940116409304 0.03402595938949015 857.8175860965496 -2.9333949454544657 0.19745484748736608 SPS(ph)LDNPTPFPNLGPSENPLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSLDNPTPFPNLGPSENPLKR 22 1 M0R0R8;M0R0X9;M0QXC8;M0QX56;M0R3C2;M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653-3;Q14653-2;Q14653;Q14653-4 M0R0R8 IRF3 Interferon regulatory factor 3 1 S(0.174)PS(0.826)LDNPTPFPNLGPSENPLKR 168.26 5.8973e-12 915900000.0 475680.0 359610.0 320760.0 358970.0 399020.0 494620.0 437290.0 432820.0 627300.0 553480.0 True False 473118.99173301656 371579.4014611649 365920.21990410035 404415.56519397715 449832.8318231672 460428.0836102404 416136.6120899776 465119.22621542704 472710.3203893488 518156.4325419315 0.9130813824157817 0.7171181869504148 0.706196424328841 0.7804893267657158 0.8681409774581246 0.8885889563341097 0.8031099991339044 0.897642482085345 0.9122926797808207 1.0 18.983028190846206 1.489073250731711 0.42470609547948523 1.0044047078097125 0.769509164779735 0.512838368870066 0.062349165582070584 0.805238249880228 0.41232283682452214 0.07582693324315895 0.05370550282669767 30.83708023218497 -1.489073250731711 -0.2348955430299775 SPS(ph)LGSDLTFATR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSLGSDLTFATR 13 0 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 S(0.036)PS(0.96)LGS(0.004)DLTFATR 126.25 0.00020008 135590000.0 158770.0 127250.0 125940.0 132500.0 123360.0 156450.0 163880.0 121880.0 212750.0 136340.0 True False 157915.19996100533 131485.43932575046 143671.25730989646 149274.48641446882 139069.1647879951 145634.9797436861 155952.49831760497 130975.30449409963 160320.61320394385 127638.66447345343 1.2372050476432936 1.0301380061297734 1.1256092180420574 1.1695083698209272 1.0895535875566844 1.140994230427533 1.2218280327591513 1.0261412953074274 1.2560505381759748 1.0 16.961705892839145 -1.1987670439961613 5.024810263462411 0.9999873250713875 1.1345828799159807 0.23271177802703968 0.07676899502928179 9.918484481515726e-06 1.5817119028032714e-06 0.06763700013809604 0.015940692804999584 0.06327511687364258 1.1987670439961613 0.13459555484459318 SPS(ph)PAHLPDDPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 S(0.052)PS(0.948)PAHLPDDPK;S(0.001)PS(0.999)PAHLPDDPK;S(0.009)PS(0.991)PAHLPDDPK;S(0.005)PS(0.995)PAHLPDDPK;S(0.053)PS(0.947)PAHLPDDPK;S(0.048)PS(0.952)PAHLPDDPK 255.15 4.139100000000001e-21 18765020000.0 16464770.0 15365140.0 14485680.0 13839750.0 13776400.0 17491300.0 17750270.0 15726390.0 22425370.0 17192170.0 True False 16376125.50772792 15876559.39647673 16525137.832212329 15591860.930978458 15530742.88087985 16282167.601091348 16891621.62748374 16899973.07879032 16898938.048062615 16094950.991642756 1.0174697342185859 0.9864310493844048 1.0267280615388605 0.9687423676576881 0.964945024619468 1.011632008668172 1.0494981709639657 1.0500170573719403 1.0499527495819854 1.0 23.940104848096304 2.405531757767893 4.55181138720034 1.0423862545713585 0.9925908684227785 0.4539442290423059 0.02267886846365424 0.1684464322600252 6.727891007025503 0.007992173986319236 0.006660422312150281 254.4085822509501 -2.405531757767893 -0.04979538614857992 SPS(ph)PAVPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;E9PQ59;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 S(0.346)PS(0.654)PAVPLR 123.75 0.00057588 413280000.0 324810.0 421120.0 386540.0 381980.0 360320.0 396070.0 361970.0 384580.0 451030.0 362830.0 True False 323061.2590497836 435136.72462758404 440961.47213409084 430338.62883470865 406204.6162160384 368690.61314849375 344460.12824031914 413279.3124576706 339879.6999923607 339673.87876560865 0.9510924426211513 1.2810426465788067 1.2981907049684427 1.2669170511391106 1.1958665108197477 1.085425274643824 1.0140907198754994 1.2166944186569413 1.0006059377527057 1.0 18.373790752341044 2.768753699886985 4.831803863785559 1.0836365161299097 1.213793472228212 0.2627214239207243 0.10954606435211302 0.29506839223972947 18.139118037705565 0.03455820907936775 0.03566387825611471 587.1562659342967 -2.768753699886985 0.13015695609830225 SPS(ph)PCPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPCPFR 8 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 S(0.049)PS(0.951)PCPFR 89.08 0.014853 127790000.0 154890.0 192120.0 144250.0 149840.0 170870.0 164230.0 163450.0 159440.0 185010.0 150930.0 True False 154056.0894498968 198514.59806100765 164559.14615652326 168809.72863655852 192629.2816741628 152877.16665583616 155543.2990603644 171338.22241991523 139416.7645069877 141297.5181823261 1.0902957916862164 1.4049404449188578 1.164628708794312 1.1947112080109679 1.363288500408052 1.0819522424913934 1.1008211684203537 1.2126060289241987 0.9866894075739424 1.0 17.108376600140545 1.541377859959282 0.6190469193484702 0.9922541046778878 1.2429250436692096 0.3687852147085545 0.10522259437272047 0.7485784265672581 0.6468145770278264 0.09722065632709043 0.049385769841856234 34.78386684969451 -1.541377859959282 0.25067093899132187 SPS(ph)PEPIYNSEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSPEPIYNSEGK 13 0 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 1 SPS(1)PEPIYNSEGK;S(0.006)PS(0.994)PEPIYNSEGK;SPS(1)PEPIYNSEGK;S(0.002)PS(0.998)PEPIYNSEGK 271.64 4.503e-32 1717830000.0 1673160.0 1491510.0 1393930.0 1242870.0 1352830.0 1868980.0 1697100.0 1586220.0 2296850.0 1735470.0 True False 1664151.8924655523 1541154.0087131653 1590183.2277432415 1400217.2145656676 1525104.8816483768 1739781.8117056882 1615004.7894484207 1704591.7910619536 1730822.0937131767 1624710.8187893815 1.0242757500104291 0.9485712724320524 0.9787484697911548 0.861825500496765 0.9386931286545972 1.0708255226625802 0.9940259957472352 1.0491662709134255 1.0653108686768404 1.0 20.631751525973034 2.749218165348988 24.778966700674054 1.036218924832551 0.9469715287056479 0.48122741065463925 0.044283519739840696 546.9524495517082 1271672.0796707852 0.013681665589616976 0.014369743968937147 561.3298860762744 -2.749218165348988 -0.08924739612690313 SPS(ph)PGLFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSPGLFR 8 0 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 SPS(1)PGLFR;S(0.319)PS(0.681)PGLFR;S(0.003)PS(0.997)PGLFR;S(0.003)PS(0.997)PGLFR 152.97 0.00047047 731570000.0 1483130.0 1497770.0 1321630.0 1309370.0 1247630.0 1650140.0 1549550.0 1388620.0 1876140.0 1698120.0 True False 1475144.9928712328 1547622.3690289168 1507704.0161861065 1475136.107747269 1406508.2852176267 1536069.7058117392 1474592.3466441568 1492245.8756694826 1413790.4359880015 1589744.527766324 0.9279132383263431 0.9735038190088371 0.9483939021979281 0.9279076493000508 0.8847385605999512 0.9662368254665415 0.9275656062273337 0.9386702389006916 0.889319265639777 1.0 20.600363512105794 5.489145861792741 0.0018263919463243391 1.8621315085730126 7.161550353947199e-06 0.04609060888175387 0.03316062822734333 1661024.5616214979 378.5472002629612 189770.62158898122 196226.39367143108 308422.3641169138 -5.489145861792741 -1.8621243470226587 SPS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.296)PS(0.702)PGPNHT(0.001)S(0.001)NSSNASNATVVPQNSSAR 120.57 3.4232e-05 344790000.0 12896.0 22632.0 31773.0 36164.0 31572.0 28534.0 32174.0 27335.0 19919.0 28982.0 True False 12826.569368880297 23385.292438667082 36246.36222413321 40742.35869202154 35592.50705809491 26561.51174181106 30617.620703384302 29374.876504317475 15010.229350925301 27132.34394726146 0.4727409247727348 0.8618972427934086 1.3359097280569325 1.5016158858672355 1.311810993081833 0.97896119087389 1.1284546872506613 1.0826516338365364 0.5532227285671102 1.0 14.72772606613048 1.3428343302880592 8.7917763352303 0.7783544616273791 1.1054255379659215 0.15170295793804678 0.2878826364749971 0.45341501997798533 33.851046193564876 0.2029819148986647 0.07410077286713627 22.02086276022377 -1.3428343302880592 0.3270710763385424 SPS(ph)PLVSLQAVK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSPLVSLQAVK 12 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 S(0.001)PS(0.999)PLVSLQAVK;S(0.005)PS(0.995)PLVSLQAVK;S(0.038)PS(0.962)PLVSLQAVK 204.35 1.2008e-07 746770000.0 710650.0 695480.0 675080.0 606330.0 572490.0 685460.0 749600.0 683880.0 1011330.0 772300.0 True False 706823.9393606378 718628.631373462 770125.3960994505 683091.315831584 645393.2080859233 638075.7635992786 713338.9842499187 734914.5982722755 762101.2726277059 723011.1528007038 0.9776113917781737 0.9939385147652767 1.065163923289761 0.9447866926886486 0.8926462691286097 0.8825254785179817 0.9866223798715714 1.0164637093431572 1.0540657217742495 1.0 19.46365837606157 1.7897408852308914 3.449645136763985 1.027346246373225 0.9607270339555803 0.24144772188138097 0.05008138422515146 0.36587668135639584 8.192878952713249 0.030313360461357877 0.015383685037424061 61.62272301629712 -1.7897408852308914 -0.06661921241764468 SPS(ph)PMTALQPGSTGPLPPADDKLEELIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPMTALQPGSTGPLPPADDKLEELIR 28 1 A0A5H1ZRP3;O43151;O43151-3;O43151-2 A0A5H1ZRP3 TET3 Methylcytosine dioxygenase TET3 1 S(0.006)PS(0.994)PMTALQPGSTGPLPPADDKLEELIR;S(0.01)PS(0.99)PMTALQPGSTGPLPPADDKLEELIR 175.34 5.124699999999999e-13 100523000.0 90274.0 77190.0 70832.0 64636.0 65781.0 92909.0 85907.0 83047.0 138592.0 88352.0 True False 89787.97481438424 79759.22248765972 80804.52991721909 72818.91097272151 74157.82043546626 86486.41951426107 81751.35021339089 89244.38884412122 104437.85863765453 82713.29971804726 1.0855324974393852 0.9642853417714274 0.9769230606524613 0.8803772938686559 0.8965646478650364 1.0456168452845624 0.9883700746078871 1.078960567990119 1.262648920955419 1.0 16.335831702834593 1.6333510187901088 3.2255638961083437 1.1412051490564121 0.9711655670586535 0.37205822379435505 0.08248622272965284 0.18912146658968218 4.650856157002447 0.0503869821577516 0.021519127237414948 42.98837401931582 -1.6333510187901088 -0.1700395819977586 SPS(ph)PPLPTHIPPEPPRT(ph)PPFPAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 S(0.412)PS(0.544)PPLPT(0.045)HIPPEPPRT(1)PPFPAK;S(0.44)PS(0.559)PPLPT(0.001)HIPPEPPRT(1)PPFPAK;S(0.428)PS(0.572)PPLPT(0.001)HIPPEPPRT(1)PPFPAK 106.17 0.022414 1108770000.0 652640.0 535680.0 508500.0 538840.0 447400.0 552260.0 536800.0 568930.0 777400.0 638930.0 True False 649126.2587551214 553509.7849746014 580092.3800387675 607057.0887514898 504373.7380524412 514083.56608020555 510832.9332248617 611386.445568003 585820.1866263023 598152.9403845055 1.085217868088802 0.9253649821043985 0.9698061162515922 1.014886073052254 0.8432186887323816 0.8594517077016149 0.8540172566843646 1.0221239490605707 0.9793819390902342 1.0 19.19015488548827 SPS(ph)PPTQHTGQPPGQPSAPSQLSAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7-7;I3L460;Q68EM7-2 Q68EM7;Q68EM7-2 ARHGAP17 Rho GTPase-activating protein 17 1 S(0.01)PS(0.862)PPT(0.128)QHT(0.001)GQPPGQPSAPSQLSAPR;SPS(1)PPTQHTGQPPGQPSAPSQLSAPR;S(0.02)PS(0.968)PPT(0.012)QHTGQPPGQPSAPSQLSAPR;S(0.007)PS(0.981)PPT(0.012)QHTGQPPGQPSAPSQLSAPR 240.11 2.9654e-45 11680280000.0 227138.0 249291.0 235052.0 252846.0 255047.0 272335.0 257236.0 221139.0 273143.0 255948.0 True False 225915.11424540426 257588.50023540793 268145.27849139087 284856.27767511527 287525.72366799443 253509.12245763376 244792.51194305212 237641.51510108923 205830.56757868303 239613.17951189258 0.9428325883643288 1.0750180802246865 1.1190756661950734 1.1888172355768818 1.1999578831753026 1.057993232985131 1.0216153904460104 0.9917714692705144 0.859011879054287 1.0 17.870347737711768 1.9339592616375993 1.6606886628531956 0.937908580267918 1.1073312664956614 0.44149871418330444 0.07535942742256636 0.35178627857404754 1.8070600322505423 0.052815511120431376 0.024556394478727345 85.89329467701936 -1.9339592616375993 0.16942268622774337 SPS(ph)PQFAPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSPQFAPQK 10 0 Q13796;C9IZC6;F5H3B6 Q13796 SHROOM2 Protein Shroom2 1 S(0.363)PS(0.637)PQFAPQK;S(0.073)PS(0.927)PQFAPQK;S(0.01)PS(0.99)PQFAPQK;S(0.031)PS(0.969)PQFAPQK 126.12 0.0004102000000000001 843560000.0 1207900.0 1232760.0 1266950.0 1137750.0 948330.0 1244670.0 1421200.0 1141490.0 1639470.0 1366810.0 True False 1201396.8006103074 1273791.6713808437 1445325.5474731876 1281789.0333438653 1069094.2043077124 1158628.8925380255 1352451.1264887739 1226673.7801687717 1235444.5862724772 1279579.015615087 0.9389000491171717 0.9954771497784674 1.129532080344743 1.0017271443981253 0.8355046396207149 0.905476628171398 1.056950067158344 0.9586541864154563 0.965508633070702 1.0 20.287237807687298 3.465679575282046 24.994096745390788 0.9537938129799345 1.0265387066048204 0.16587668436298564 0.06965411204643811 380.07643614409517 830265.5928154228 0.02024215600901897 0.027431324771820337 2921.995718769764 -3.465679575282046 0.0727448936248859 SPS(ph)PQGTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSPQGTK 8 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 SPS(1)PQGTK;S(0.002)PS(0.998)PQGTK;S(0.026)PS(0.973)PQGT(0.001)K 127.87 0.0012146 1036360000.0 3196180.0 3011340.0 2851450.0 2703690.0 2652400.0 2364000.0 3530710.0 3270920.0 4019820.0 3676350.0 True False 3178972.1220089807 3111570.6315065287 3252909.374752292 3045976.8767844182 2990167.417993502 2200582.2442574273 3359916.068678004 3515012.659795212 3029189.2238283316 3441722.195518411 0.9236573847094438 0.9040737324930569 0.9451400171077203 0.885015321907937 0.8687997601570241 0.6393840406767529 0.9762310488199978 1.0212947065780715 0.8801376321926118 1.0 21.71469922180903 -1.200915998242377 5.507864105568735 1.0000039793704474 0.8997554762768445 0.09599623320142514 0.09624119471525455 5.020304488553734e-06 7.284392329339687e-07 0.09947894355859975 0.023446481312143986 0.06296279544715012 1.200915998242377 -0.10024850309360289 SPS(ph)PRPNMPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPRPNMPVR 11 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 S(0.237)PS(0.763)PRPNMPVR 60.364 0.056999 253270000.0 59326.0 66675.0 65868.0 62075.0 71290.0 85453.0 90643.0 60007.0 77554.0 68960.0 True False 59006.59540773827 68894.23706911136 75141.64186508063 69933.68863530696 80368.35893106507 79545.8352447249 86258.25180011382 64485.027049371885 58441.85587035791 64558.91376037368 0.913996100162958 1.0671529778959619 1.1639235775246677 1.0832537996981033 1.2448840020662684 1.2321433340712467 1.3361168392684328 0.9988555149599319 0.9052484384616393 1.0 15.978328684222983 1.558731020894412 7.695537150944383 0.9535618025428779 1.1518972533271998 0.36372228268657636 0.11055996407443776 0.1320466441853261 14.315333248200789 0.06336979341815388 0.02954971883354865 36.20187136635907 -1.558731020894412 0.1983354507843219 SPS(ph)PSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 S(0.241)PS(0.758)PS(0.002)FR;S(0.133)PS(0.867)PSFR 122.44 0.0045536000000000005 2030410000.0 1481540.0 1849910.0 1662880.0 1717530.0 1696670.0 1852380.0 1659500.0 1601090.0 1808090.0 1552210.0 True False 1473563.5532545694 1911483.1360557924 1896999.049987934 1934969.1218976825 1912730.8675490252 1724329.330633489 1579223.6450943688 1720571.4659702824 1362510.4466647177 1453146.6288861597 1.0140501474266634 1.315409675843207 1.3054422811013835 1.3315718341381977 1.31626831699368 1.1866175762009588 1.086761386429976 1.1840315572896483 0.9376276416847797 1.0 20.470748853914927 1.6901030554648329 0.9862943465690802 0.9811381735021775 1.261532617927898 0.49201922647730056 0.10118676678868428 0.4305049428193028 0.7901647949395948 0.08866890986825855 0.035431118881121916 48.989505472281095 -1.6901030554648329 0.2803944444257206 SPS(ph)PSPT(ph)SPGSLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPSPTSPGSLRK 14 1 O15075-2;O15075;Q5VZY9;O15075-3;O15075-4 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 2 S(0.162)PS(0.838)PS(0.167)PT(0.461)S(0.336)PGS(0.036)LRK 138.19 4.0921e-05 0.0 89700.0 89073.0 79651.0 80182.0 82424.0 100430.0 102360.0 89004.0 127500.0 94637.0 True False 89217.0651666068 92037.74095923435 90865.16846109694 90333.03297875426 92920.20783467662 93487.51048679074 97408.45574682731 95645.93043315424 96079.33341246919 88597.18563718791 1.0069966051964376 1.0388336863897207 1.0255988134114844 1.0195925788057736 1.0487941255289057 1.055197293395177 1.0994531603489326 1.0795594661982997 1.0844513030687142 1.0 16.434973250657503 2.8719758680522833 2.0042290072080817 1.0736806173278084 1.0241813126052708 0.3202895688484796 0.02653168620247223 0.3081512801647327 2.4523525025223387 0.008717175120643768 0.009413760267381539 744.6905933807807 -2.8719758680522833 -0.04949930472253761 SPS(ph)PVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 S(0.006)PS(0.994)PVLR 124.08 0.0043859 405800000.0 244900.0 243500.0 241310.0 235190.0 240010.0 260810.0 234420.0 215000.0 279760.0 253120.0 True False 243581.48561094815 251604.75030114184 275284.3504958799 264965.02988542605 270573.8508492763 242780.81858070174 223080.20902863663 231044.39174787846 210816.8965919405 236965.66489306546 1.027918900068785 1.0617772427692531 1.161705644655762 1.1181578985503902 1.14182723885917 1.024540068664633 0.9414030894699666 0.9750121050327731 0.8896516577077738 1.0 17.854318509606678 2.474448361850699 3.5690595531891014 0.9525382291332047 1.1037767692833138 0.7196259429424565 0.04428937476087336 0.12589621903221052 3.4615553852341465 0.01624426977413101 0.01405547610422969 298.15930117637845 -2.474448361850699 0.15123854015010907 SPS(ph)PVQGK ddPTM_BT-474_Trastuzumab_2h_R1 5 SPSPVQGK 8 0 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 S(0.17)PS(0.83)PVQGK;S(0.004)PS(0.996)PVQGK;S(0.136)PS(0.864)PVQGK;S(0.109)PS(0.891)PVQGK;S(0.458)PS(0.542)PVQGK 148.9 0.000539 10778440000.0 6291060.0 6321820.0 5742780.0 5263210.0 5325720.0 5426700.0 6356090.0 6038740.0 7776850.0 6115230.0 True False 6257189.631962474 6532237.957079103 6551313.506861407 5929531.846350915 6003918.873984449 5051565.002077736 6048621.644078267 6489381.442900391 5860349.521951065 5724950.785888194 1.0929682832184742 1.141012071785987 1.1443440741901518 1.0357349902407906 1.0487284692095347 0.8823770179002532 1.0565368804545727 1.133526153429387 1.023650637555981 1.0 22.448831860566905 3.7311957836941154 23.294816641913744 1.0342841688344009 1.127598538272464 0.36050933860454126 0.060480366984258106 277.45476085212766 877586.6748747133 0.017837583226927668 0.028330897731655508 5385.12493875797 -3.7311957836941154 0.09331436943806315 SPS(ph)PYYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 S(0.12)PS(0.88)PYYSR;S(0.302)PS(0.698)PYYSR 195.58 0.00016683 9811300000.0 532020.0 878550.0 704450.0 595280.0 699760.0 733800.0 816570.0 627350.0 688690.0 653490.0 True False 529155.6634329789 907792.0056553094 803630.4368108344 670642.3869645664 788870.2881975328 683074.1331793993 777069.3894996752 674166.0426187525 518971.57747320354 611783.7087190629 0.8649391212801524 1.4838446868028266 1.313585872519318 1.096208312523948 1.2894594559395007 1.1165288049425222 1.2701701245472576 1.1019679553584454 0.8482925747725663 1.0 19.222662164099923 1.4486719602240195 4.015282772917847 0.9282471009708659 1.2144024368164543 0.3292025343877407 0.15794348144382875 0.21923223090278715 6.629539261800376 0.10409421896342891 0.038208307415709804 28.097776925829212 -1.4486719602240195 0.2861553358455884 SPS(ph)SKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK 35 2 O60508;Q5SRN1 O60508 CDC40 Pre-mRNA-processing factor 17 1 S(0.216)PS(0.261)S(0.261)KPS(0.261)LAVAVDSAPEVAVKEDLETGVHLDPAVK 97.718 0.00012116 134340000.0 128240.0 104450.0 101190.0 90872.0 102750.0 147140.0 157670.0 118850.0 235740.0 168540.0 True False 127549.57008880332 107926.55510864154 115436.67244075272 102376.38588268383 115834.60345303583 136968.55813030354 150042.89974210874 127719.1905080714 177645.0357541607 157783.6329056465 0.8083827691119083 0.6840161626471161 0.7316137315065058 0.6488403391237936 0.7341357358801854 0.868078365341035 0.9509408357445626 0.8094577882133478 1.1258774594218601 1.0 17.26758803498144 2.1090996949478185 0.8041119532687343 1.0170575528869215 0.7094892906585729 0.682254116186674 0.08091115234772887 0.38659326495887536 0.4693151083480836 0.06787824042631938 0.037229239079577654 128.5581739204872 -2.1090996949478185 -0.30756826222834854 SPS(ph)WTAPPVIALQNGLSEDEALQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSWTAPPVIALQNGLSEDEALQR 24 0 A0A087X0D9;E9PFU9;Q8WV99 A0A087X0D9 ZFAND2B AN1-type zinc finger protein 2B 1 S(0.139)PS(0.43)WT(0.43)APPVIALQNGLSEDEALQR 89.663 0.006501600000000001 18824000.0 7750.6 9390.6 8970.0 6740.9 11787.0 9802.8 8603.7 11191.0 11445.0 11650.0 True False 7708.87163077261 9703.160444262425 10232.898031362323 7594.29724883995 13288.004582977463 9125.155509309085 8187.506161674254 12026.129246746546 8624.533105142826 10906.487025933198 0.706815275390016 0.8896687284540356 0.9382396006184915 0.6963101162438833 1.2183578957533756 0.8366722930684735 0.7507005823420674 1.1026583736954978 0.7907709498609045 1.0 13.412898864675528 5.459757127923746 1.1354214897024024 0.926653260374886 5.0047430103343164e-12 0.14132448738390058 0.15241744739314525 13.815910748750406 4.522427568302644 0.04161653489342876 22.69383344983493 288241.91066375095 -5.459757127923746 -0.9266532603698813 SPSDLHIS(ph)PLAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSDLHISPLAK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 SPSDLHIS(1)PLAK;SPSDLHIS(1)PLAK;SPSDLHIS(1)PLAK 125.28 0.00019843 1114210000.0 1153360.0 1091780.0 960510.0 935240.0 859520.0 1363190.0 1263550.0 1054600.0 1662430.0 1536170.0 True False 1147150.4379103433 1128119.2373050535 1095741.4590974147 1053641.2881076827 968974.7772258244 1268955.883904094 1202427.259270258 1133299.6071502923 1252746.4019207167 1438130.315418696 0.7976679342694775 0.784434640734636 0.7619208407955725 0.7326466015014269 0.6737739736358439 0.8823650195668473 0.836104521529528 0.7880367968047071 0.8710938003945722 1.0 20.455762980073597 0.5927279558177859 0.48936316553753695 1.0120235985999217 0.7596423024280523 0.6545959449013621 0.050492771047506255 1.1060795323195542 0.5232747144308592 0.08178995926964662 0.028893144893392526 3.9149656492520544 -0.5927279558177859 -0.25238129617186944 SPSDSSTAS(ph)TPVAEQIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-3;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 SPSDSSTAS(0.804)T(0.196)PVAEQIER 253.1 8.136399999999997e-23 0.0 156690.0 186270.0 158640.0 170880.0 176070.0 183780.0 175650.0 152190.0 193230.0 172540.0 True False 155846.39844989564 192469.88434740703 180975.1330764009 192513.39047927887 198491.47085134825 171075.7211715863 167153.1384518387 163547.19060516128 145611.0556493445 161528.349481074 0.9648238154513917 1.191554825922111 1.1203923872051045 1.1918241664559033 1.2288336474001127 1.059106477105624 1.0348223020221212 1.0124983702896304 0.901458202954061 1.0 17.30142786577362 2.136461856490877 1.6022591709883915 0.9692067667710905 1.1422343657228509 0.4882506810090437 0.07379460965473601 0.32212558024588295 1.5913303848356257 0.0431815940763329 0.023774873453406373 136.9184129481585 -2.136461856490877 0.17302759895176034 SPSDSSTAST(ph)PVAEQIER ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-3;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 SPSDSSTAS(0.055)T(0.945)PVAEQIER 284.81 1.5769e-38 125750000.0 114340.0 138680.0 97651.0 118230.0 123440.0 130620.0 138060.0 114250.0 131260.0 141740.0 True False 113724.40614436811 143295.87996616962 111399.41200229227 133197.90587760505 139159.35231379798 121590.5468464066 131381.51035958336 122775.91514974466 98912.73179388797 132694.03185028068 0.8570423594686151 1.0798969476475857 0.8395208921527441 1.0037972621699587 1.0487235211212222 0.9163226495642081 0.9901086622179193 0.9252557438926365 0.7454195973598247 1.0 17.017743958832707 1.462523526307846 7.566099542447883 0.8603260815241021 0.9639429029163826 0.12698198569844044 0.0921117885408143 0.21342092984172087 35.15350145559968 0.04833002841685288 0.02115036460622652 29.008383366953826 -1.462523526307846 0.10361682139228057 SPSELFAQHIVTIVHHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSELFAQHIVTIVHHVK 18 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ; 174.23 2.2057e-12 1030110000.0 615150.0 720150.0 651400.0 675620.0 640220.0 740810.0 717960.0 428180.0 880980.0 689160.0 False True 611838.1007495899 744119.7574101314 743111.4579297003 761153.4227271209 721748.2221187606 689599.5483791633 683229.5319264553 460132.9658539849 663874.2835271929 645177.2187804396 0.9483256428460544 1.1533571486245595 1.1517943230146641 1.179758678035638 1.1186821250183958 1.068852910960951 1.0589796292217897 0.7131884890848461 1.0289797348736147 1.0 19.29933597224107 1.9454412936045538 10.071648615291446 0.8828511039540607 1.108123477525565 0.40798174871405557 0.10006910576530348 0.4925906540360046 89.11258522268976 0.04050795684716367 0.02582111832595764 88.19445759231586 -1.9454412936045538 0.22527237357150431 SPSFGDPQLS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSFGDPQLSPEAR 14 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 SPSFGDPQLS(1)PEAR;SPSFGDPQLS(1)PEAR;SPSFGDPQLS(1)PEAR;SPSFGDPQLS(1)PEAR 191.83 4.6555e-07 1593140000.0 1804660.0 2029100.0 1837480.0 1713450.0 1671800.0 2032870.0 1948650.0 1819430.0 1991720.0 1986750.0 True False 1794943.9110765744 2096637.3668831503 2096181.2123375293 1930372.5943160143 1884693.8204650644 1892342.4817612513 1854386.3549341026 1955205.1054783373 1500887.2936806537 1859953.9140577507 0.9650475194628086 1.1272523211658732 1.1270070707098412 1.037860443598108 1.0133013545229947 1.01741363990726 0.9970066144749244 1.0512115868574305 0.8069486465964403 1.0 20.82683544399939 2.1035961217527803 0.7579314333701435 0.9423787440963469 1.0690160087094902 0.29041479844542484 0.07212630279550354 0.8727552178822443 0.9481576335270561 0.06065871566734994 0.034262238537765694 126.93930662384258 -2.1035961217527803 0.12663726461314329 SPSFGDPQLS(ph)PEARPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSFGDPQLSPEARPR 16 1 O95425-2;O95425-3 O95425-2 SVIL Supervillin 1 SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR 165.69 4.202e-09 3565940000.0 1652160.0 2127500.0 2057490.0 2061470.0 1947330.0 2146760.0 2338380.0 1968860.0 2368960.0 2248690.0 True False 1643264.9541322305 2198312.5513990917 2347166.7079763287 2322451.8906327174 2195310.932770805 1998359.5341294738 2225263.6259209267 2115786.3308685045 1785161.5504376718 2105176.678999632 0.7805829175882285 1.0442413567129754 1.1149499856191114 1.1032099651304959 1.0428155292951489 0.9492597719062149 1.057043642996444 1.0050397916596312 0.8479865696051556 1.0 21.00550988728102 1.406974237648134 9.985261473278513 0.9241725118611178 1.0210379423060005 0.11539383853753249 0.09612851230229603 0.7339268850890414 97.65297220914424 0.06240364569109511 0.023241303309031573 25.525498808923818 -1.406974237648134 0.09686543044488272 SPSGSAFGS(ph)QENLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 SPSGSAFGS(1)QENLR;S(0.207)PS(0.078)GS(0.337)AFGS(0.378)QENLR;SPSGSAFGS(1)QENLR;SPS(0.008)GS(0.137)AFGS(0.855)QENLR 185.3 1.2520999999999998e-06 1667290000.0 819680.0 892180.0 877080.0 800380.0 806530.0 952640.0 928410.0 879980.0 1024480.0 926220.0 True False 815266.9339550094 921875.6719658006 1000565.2402839767 901708.0259351896 909236.8148221623 886786.2390733474 883499.261429384 945648.5760478984 772010.631328679 867107.8466231623 0.9402139965979543 1.0631614920288455 1.1539109514238013 1.0399029710626806 1.0485856152300612 1.0226942848306817 1.0189035480073856 1.0905778095892025 0.890328272700072 1.0 19.72585191438019 1.2435537565417658 24.9996535948777 0.9451641300729652 1.0508227940498838 0.33738809386048607 0.05704598433997559 119.54592982450394 598566.7164623255 0.04003680335809586 0.013614247278030591 17.52079291430251 -1.2435537565417658 0.10565866397691859 SPSHS(ph)SSNRPFTPPTSTGGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSHSSSNRPFTPPTSTGGSK 21 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 S(0.138)PS(0.138)HS(0.238)S(0.238)S(0.238)NRPFT(0.009)PPTSTGGSK 157.85 1.038e-09 235830000.0 89740.0 134110.0 133220.0 133840.0 136890.0 170290.0 152320.0 151590.0 137790.0 163450.0 True False 89256.84981105139 138573.77027879318 151976.218031002 150784.13027707563 154322.13008940232 158518.2531195417 144951.69968109342 162902.4155584229 103833.50079140511 153018.48106341466 0.5833076448723938 0.9056015281014635 0.9931886460696162 0.9853981638635332 1.00851955278165 1.0359418811238088 0.9472823065144781 1.0645930767729428 0.6785683668391267 1.0 17.223346381788513 4.7373034420047295 2.883118403010638 0.9747896764969908 0.5150566304433654 0.5551861916918989 0.1013273580953083 0.27522536904609446 3.2491140696880083 0.023389549577093098 0.2951689092677344 54613.93159205148 -4.7373034420047295 -0.4597330460536254 SPSHSSSNRPFT(ph)PPTSTGGSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSHSSSNRPFTPPTSTGGSK 21 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 S(0.001)PS(0.001)HS(0.002)S(0.002)S(0.001)NRPFT(0.993)PPTSTGGSK;SPSHSSS(0.003)NRPFT(0.997)PPTSTGGSK;SPSHSSS(0.001)NRPFT(0.999)PPTSTGGSK 178.15 9.1001e-17 1271040000.0 233584.0 400800.0 457840.0 526140.0 535030.0 494160.0 499110.0 508360.0 407210.0 542310.0 True False 232326.40969762224 414140.3857112832 522299.89238338044 592749.2700536503 603162.8991287376 459999.882327517 474966.1425146432 546296.4045997747 306858.5518344438 507699.3115050502 0.45760631230501725 0.8157198095927763 1.028758323179615 1.1675203346178933 1.1880317452877573 0.9060478749988246 0.9355264656684857 1.0760235285336617 0.604410021602701 1.0 18.953614778055808 4.643405231305198 2.4798104218733714 1.0017226155460857 0.39520804473571725 0.5173380881354658 0.15540307954798133 0.32123011669037915 2.8406271508402057 0.03882645718141449 0.3748153276636668 43995.193413631125 -4.643405231305198 -0.6065145708103684 SPSKPLPEVTDEYKNDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSKPLPEVTDEYKNDVK 18 2 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 SSB Lupus La protein 0 ; 199.12 9.327999999999999e-16 1317360000.0 1630830.0 1059310.0 899780.0 941820.0 869800.0 1408290.0 1340120.0 1313290.0 2427230.0 1385340.0 False True 1622049.7924822452 1094568.4929835831 1026461.2029720377 1061054.3154330195 980563.8742914903 1310938.2270580754 1275293.2758444506 1411294.3685514962 1829071.6897156683 1296926.4151507553 1.2506876053516864 0.8439711615067613 0.7914567788741672 0.8181299286048408 0.7560674706263185 1.0108038603760656 0.9833196864112063 1.0881838414768095 1.4103126193964182 1.0 20.306665195784493 1.7911247198678955 1.7878589938726535 1.2045962115691817 0.8918830884406154 0.3307241385203581 0.16352969732015601 0.3574839094975437 2.221609946592316 0.11332358516283354 0.04776159038655936 61.819390640603864 -1.7911247198678955 -0.31271312312856636 SPSLSPSPPS(ph)PLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 SPSLSPS(0.008)PPS(0.992)PLEK 155.06 2.8029e-07 0.0 195030.0 181710.0 151800.0 168340.0 176810.0 189610.0 175510.0 207170.0 251300.0 173990.0 True False 193979.98014986995 187758.10750398523 173172.12053074676 189651.82673971078 199325.70546502477 176502.70699392987 167019.9107866903 222630.07738794427 189370.48224747865 162885.80923966665 1.1908955178805787 1.1526977603538318 1.0631504447139717 1.164323814486879 1.2237143701802853 1.0835978150449412 1.0253803665667451 1.366786207019245 1.1625965646205743 1.0 17.313501394866577 SPSPFHAVAECR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSPFHAVAECR 12 0 E5RIA4;E7ETB3;Q9ULA0-2;Q9ULA0;C9JBE1;E7EPX3;B9ZVU2;F8WAN0;E5RJ35 E5RIA4 DNPEP Aspartyl aminopeptidase 0 ; 127.56 0.00026759 615400000.0 213230.0 393190.0 416920.0 490920.0 429560.0 410800.0 412990.0 366760.0 434350.0 424770.0 False True 212081.99337208032 406277.0914616262 475618.71206639695 553070.421664839 484261.9197984054 382402.3629191834 393012.095924992 394129.49356954434 327310.2624918116 397660.8149361066 0.5333238413399022 1.0216674014685203 1.196041184351584 1.3908094559271638 1.2177763098841239 0.961629480592965 0.9883098388463003 0.9911197653026746 0.8230890502610914 1.0 18.601178881984588 2.609733829430998 11.9192481653085 0.9580970846115636 1.0937236929026033 0.06748969979312391 0.21338815795619467 1.5922087535998692 144.61133159888365 0.07332454600606954 0.06911876654584376 407.1306789178078 -2.609733829430998 0.13562660829103967 SPSPGGPQLS(ph)PQLPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSPGGPQLSPQLPR 15 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 SPSPGGPQLS(1)PQLPR;SPSPGGPQLS(1)PQLPR;SPSPGGPQLS(1)PQLPR;SPSPGGPQLS(1)PQLPR 179.92 6.823100000000001e-07 1790480000.0 556080.0 643230.0 702600.0 592220.0 537775.0 657710.0 655280.0 692570.0 784080.0 717530.0 True False 553086.1270662956 664639.5217092534 801519.9728913232 667194.9912783161 606257.4586078489 612244.0557828052 623581.6029873082 744253.0901992016 590853.9901337172 671736.6210916613 0.8233675367697791 0.989434699315821 1.193205711471777 0.9932389724324329 0.9025225654998531 0.9114346852012136 0.9283126502376857 1.1079537229780496 0.8795917500723736 1.0 19.357536156954485 2.737016066391748 0.0024802568691640434 1.7243837394196693 0.240494529443896 0.0 0.10518606419206285 907423.443869704 874.6444439580908 259853.74206089304 263414.97762233403 545.778051358826 -2.737016066391748 -1.4838892099757732 SPSPSPT(ph)SPGSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPSPTSPGSLR 13 0 O15075-2;O15075;Q5VZY9;O15075-3;O15075-4 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 SPS(0.001)PS(0.013)PT(0.493)S(0.493)PGSLR 121.56 0.00050152 0.0 95288.0 111800.0 99037.0 93664.0 97986.0 104160.0 98988.0 97249.0 107660.0 98129.0 True False 94774.97999549197 115521.19541547277 112980.54875496439 105521.85279641364 110463.93629147625 96959.6643662663 94199.57226911814 104506.21420041598 81128.63557008968 91866.32320753632 1.0316618395773245 1.2574923147244876 1.2298364058799727 1.1486456528583162 1.2024421184455791 1.0554429630020519 1.025398306801838 1.1375900389996532 0.8831161707300618 1.0 16.487248467987428 2.1306325880433175 0.7756274753024804 0.9821002197673047 1.18495913467158 0.4629801112880849 0.0819687344192678 0.6023601390561379 0.6845675090671878 0.06770511502540104 0.03839661258276535 135.09291971743946 -2.1306325880433175 0.20285891490427532 SPSPSPTS(ph)PGSLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSPSPTSPGSLR 13 0 O15075-2;O15075;Q5VZY9;O15075-3;O15075-4 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 S(0.003)PS(0.056)PS(0.247)PT(0.247)S(0.447)PGSLR 181.08 1.2963e-05 404420000.0 179470.0 191060.0 185530.0 172710.0 179260.0 195630.0 175910.0 165230.0 181060.0 153590.0 True False 178503.7534609917 197419.31660179116 211651.0113443313 194575.0682916447 202087.69844273684 182106.55856348548 167400.56125854197 177560.3016209396 136440.18907969937 143787.75470498533 1.2414391881091298 1.3729911633076384 1.47196826168253 1.3532102833851296 1.4054583358462456 1.2664955992749192 1.1642198711705591 1.2348777681746728 0.9488999209956284 1.0 17.13358129222641 1.696390814440146 0.8680412475036392 0.97703889508421 1.3744035916539006 0.7686141264464491 0.07758492519474536 0.2625009342571849 0.3790054499704694 0.06945962045999785 0.0294236879368979 49.70393978167796 -1.696390814440146 0.39736469656969053 SPSS(ph)DLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 S(0.13)PS(0.13)S(0.74)DLDTDAEGDDFELLDQSELSQLDPASSR 287.74 1.1372999999999999e-74 179980000.0 18610.0 22885.0 24871.0 24361.0 25352.0 28413.0 28958.0 19168.0 27727.0 25570.0 True False 18509.805827765384 23646.713390725356 28372.620617392662 27445.100102210406 28580.42692692327 26448.87618700772 27557.190909697376 20598.413493131797 20894.05237276499 23938.100708421618 0.773236191677207 0.9878274671309345 1.1852494466033783 1.146502825621207 1.1939304322864863 1.1048861607346647 1.1511853528129963 0.860486541686455 0.872836681041044 1.0 14.547021070375534 1.7211391850494353 8.697046313207537 0.9023998261646157 1.0863253019034214 0.2765548034013111 0.12232243118923675 0.13741617800720016 28.936302514545392 0.061929089675996765 0.03308615209521894 52.618587427199195 -1.7211391850494353 0.1839254757388057 SPSSES(ph)SPQHPTPPARPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-2;O14733-3 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 S(0.207)PS(0.034)S(0.026)ES(0.367)S(0.367)PQHPTPPARPR;S(0.002)PS(0.001)S(0.028)ES(0.532)S(0.437)PQHPTPPARPR;S(0.003)PS(0.004)S(0.006)ES(0.545)S(0.442)PQHPTPPARPR 111.66 0.00018017 751590000.0 95706.8 107504.0 115679.0 127690.0 130989.0 139752.0 133414.0 107451.0 139495.0 142771.0 True False 95191.52522282513 111082.20565245967 131965.59770010732 143855.5409076493 147669.67271736963 130091.27318082222 126960.25512902714 115469.53924512223 105118.32638723461 133659.23254759738 0.712195659128347 0.8310851673707029 0.9873287103688334 1.0762858514575184 1.1048220904963149 0.973305552495189 0.9498801744489692 0.8639099375645628 0.7864651351323668 1.0 17.0281999700095 4.461078278992063 3.1091213578044576 0.9652296483080874 0.7217378710292969 0.468926073593104 0.08762900579259955 0.25598674917883957 4.773182672974939 0.024998344198246168 0.10993004821167603 28912.009571453527 -4.461078278992063 -0.24349177727879057 SPSSQETHDS(ph)PFCLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SPSSQETHDSPFCLR 15 0 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 1 SPSSQET(0.001)HDS(0.999)PFCLR;SPSSQET(0.014)HDS(0.986)PFCLR;SPSSQETHDS(1)PFCLR;SPSSQETHDS(1)PFCLR 218.14 1.274e-12 7189800000.0 2902030.0 3101540.0 2854430.0 2943140.0 3032740.0 3526330.0 3176620.0 2649830.0 3339970.0 3004120.0 True False 2886405.792925844 3204772.883979479 3256308.93284967 3315741.2222330575 3418941.462541707 3282563.107187942 3022954.754733156 2847573.7701640967 2516879.146805057 2812394.4896434685 1.0263161172996602 1.139517551958279 1.1578421678896396 1.1789744413321614 1.2156692367062385 1.167177335639026 1.0748686807149805 1.0125086578892735 0.8949239361950696 1.0 21.42336754223218 1.770761048660749 2.030020373919324 0.9504697707037219 1.151077488606919 0.6930266656885524 0.053448212769108674 0.16870833521493253 1.3813854864925732 0.036858777191992584 0.01581374380479555 58.98764374376062 -1.770761048660749 0.2006077179031972 SPSSQETHDS(ph)PFCLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPSSQETHDSPFCLRK 16 1 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 1 SPSSQETHDS(1)PFCLRK 141.6 7.469100000000002e-07 181770000.0 134360.0 182370.0 167730.0 167230.0 185180.0 195250.0 221110.0 176080.0 249700.0 215160.0 True False 133636.62068879922 188440.07520500678 191344.92606470475 188401.3008535218 208761.57535214772 181752.82706906192 210414.06457777423 189219.98371612307 188164.78080857714 201428.3045922566 0.6634450950640456 0.9355193431551668 0.94994060766205 0.9353268461197404 1.0364063569652515 0.9023201949546119 1.044610215052483 0.939391234509736 0.9341526315751488 1.0 17.619906898723418 4.7610789488770475 3.1251078354524604 0.9667785496137943 0.6083891664876051 0.809989649902708 0.043930677581657265 0.1504614331513858 2.153571916977532 0.009905195866369676 0.13604560884241768 57687.132128380144 -4.7610789488770475 -0.3583893831261892 SPSVPKS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPSVPKSPTPK 11 1 Q9NVD7;Q9NVD7-2 Q9NVD7 PARVA Alpha-parvin 1 SPSVPKS(0.65)PT(0.35)PK;SPSVPKS(0.993)PT(0.007)PK 145.6 2.1902e-05 2871000000.0 4779600.0 3443200.0 3246000.0 3011300.0 2835200.0 4542500.0 4208500.0 4045600.0 6276000.0 4026800.0 True False 4753867.164663487 3557804.83054165 3703008.585262213 3392530.271244457 3196245.9144530133 4228487.666894825 4004918.7769687627 4347503.215140541 4729363.894091424 3769806.1764830737 1.2610375552778321 0.9437633299918873 0.9822808950662876 0.8999216703521387 0.8478541773293113 1.121672433260127 1.0623672914412354 1.1532431673175336 1.2545376798399592 1.0 21.846058918967966 2.6132289306769954 11.546144425957202 1.1255431394551612 0.9794984641214343 0.23171034081305386 0.1189000226987785 0.7249174299625625 64.31900979960514 0.038419959061326746 0.03621498187321922 410.42039184663065 -2.6132289306769954 -0.1460446753337269 SPT(ph)FSEELPVLGDGQQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 S(0.144)PT(0.856)FSEELPVLGDGQQLR;S(0.462)PT(0.511)FS(0.027)EELPVLGDGQQLR 182.35 7.693600000000002e-13 126087000.0 47724.0 52392.0 48794.0 49524.0 51245.0 56266.0 54930.0 49931.0 61400.0 52963.0 True False 47467.05928663484 54135.836048367215 55663.77107494905 55793.73332218987 57770.74699708831 52376.463855917216 52272.82604702248 53657.10476448056 46268.79271784793 49582.85599609439 0.9573280589237092 1.0918256917800673 1.122641484777191 1.1252625973498724 1.1651355259091747 1.0563422135272498 1.054252019107975 1.0821705141129243 0.9331611055541555 1.0 15.59755375328819 1.2497242037619296 24.77363488500062 0.9665805654235884 1.0853348826503082 0.41508362784801134 0.05461911750632693 156.82127380766383 348015.0490488439 0.03771159427251126 0.013485740613018785 17.771504823217377 -1.2497242037619296 0.11875431722671981 SPT(ph)GPSNSFLANMGGTVAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 S(0.25)PT(0.749)GPSNSFLANMGGTVAHK 106.39 0.0025246 240800000.0 153280.0 149480.0 139600.0 122560.0 137240.0 182210.0 151730.0 177160.0 207020.0 193650.0 True False 152454.75751100888 154455.3514374318 159254.46657504782 138076.08343364001 154716.7005147898 169614.25157620362 144390.2402351123 190380.57880025188 156002.6949258777 181291.09120789397 0.8409390472264449 0.8519743050159672 0.8784461801954965 0.761626412603488 0.8534159041349129 0.9355906594533095 0.7964552437357997 1.050137530376132 0.860509437537573 1.0 17.467948506049595 1.7467736488363736 24.999999999999552 0.9705418235243998 0.8475534585152906 0.46133834274990493 0.06173123395997374 1.5918728092880168 4857.8942894791135 0.027031925178710867 0.014990633286950453 55.81791999226501 -1.7467736488363736 -0.12298836500910915 SPT(ph)PALCDPPACSLPVASQPPQHLSEAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTPALCDPPACSLPVASQPPQHLSEAGR 29 0 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 S(0.177)PT(0.823)PALCDPPACSLPVASQPPQHLSEAGR 199.7 1.3303e-24 429440000.0 79055.0 140060.0 169630.0 209930.0 179790.0 155020.0 199600.0 164570.0 129400.0 184680.0 True False 78629.37666383621 144721.81243194191 193512.42954960885 236507.1164753923 202685.19080118064 144303.8322778284 189944.58545395356 176851.04906952754 97511.10387116493 172893.56428749728 0.4547848671399174 0.8370572555915975 1.119257563733404 1.367934760614425 1.172311946002479 0.834639697969739 1.098621491417129 1.022889717140943 0.5639949888997482 1.0 17.399524642183252 4.628550920771092 2.862948207391708 1.036025881632813 0.41713353396909864 0.4202069105304108 0.20186991106594607 0.3128549739113211 4.0062153919809385 0.05119445795352808 0.3909369777897374 42515.85534712003 -4.628550920771092 -0.6188923476637143 SPT(ph)PPPSSKPSSIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTPPPSSKPSSIPR 15 1 B4E2D5;R4GND2;F6S7C4;Q8NEM7-2;Q8NEM7;Q8NEM7-3;H7C5F9 B4E2D5 SUPT20H Transcription factor SPT20 homolog 1 S(0.05)PT(0.95)PPPSSKPSSIPR 132.51 7.6024e-05 486660000.0 652600.0 687970.0 647320.0 629290.0 618640.0 706100.0 697810.0 670150.0 843110.0 765330.0 True False 649086.4741106759 710868.6655633533 738457.029393697 708958.0494774432 697420.1370334425 657288.968980613 664054.2644069309 720159.9959527481 635336.8375951912 716485.9841680218 0.9059304556590737 0.9921599044101452 1.0306650035187888 0.989493256173992 0.9733897835325859 0.917378683609355 0.9268210112693631 1.0051278208728571 0.8867400781509209 1.0 19.45057895733447 2.9847627111240387 22.998974683363713 0.9501011124121019 0.9837783749305278 0.10702432478753199 0.044166438763276764 549.6889215817757 829697.2499002832 0.013293821450404477 0.014558099628864863 965.5231943790226 -2.9847627111240387 0.03367726251842584 SPT(ph)TTQSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTTTQSPK 9 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 S(0.172)PT(0.82)T(0.009)TQSPK 141.1 0.001202 73692000.0 64053.0 66873.0 65204.0 56576.0 62605.0 60254.0 58290.0 64259.0 88264.0 66942.0 True False 63708.14576495728 69098.8273794178 74384.15643667207 63738.51579913204 70577.37566109303 56088.78280265947 55470.29001057596 69054.3328805904 66512.51987700538 62669.70424807033 1.0165700720842148 1.1025874177720476 1.1869236871173274 1.0170546767993502 1.12618012974373 0.8949903861144599 0.8851212986581782 1.1018774335881225 1.0613185537580285 1.0 15.935480564300821 2.7674277635384334 24.97991684033021 0.9951276685491235 1.0919174326642558 0.2988750572379695 0.07715244629416275 1019.7870520257478 882461.6347794719 0.02511781600526182 0.02663749353210209 585.3663638845186 -2.7674277635384334 0.09678976411513229 SPTDWALFTYEGNSNDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPTDWALFTYEGNSNDIR 18 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;F8WBG8;F8WC20;F8WBB2;F8WFE1;Q9UJU6 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ; 210.91 8.392699999999999e-16 139601000.0 58249.0 57890.0 71553.0 61363.0 65063.0 63942.0 66348.0 54028.0 66736.0 71553.0 False True 57935.39385607232 59816.83365475601 81627.04045017475 69131.54950830984 73348.38739138567 59521.84004327764 63138.49376602662 58059.843708625056 50289.807016584724 66986.42628039465 0.8648825899976194 0.8929694712235006 1.2185609082726223 1.0320232522770514 1.0949738844756525 0.8885656893253057 0.942556533792963 0.8667404268679102 0.7507462303792637 1.0 16.031581165837917 2.7153013817941516 21.706161948303837 0.8848061372085883 1.0252101864723793 0.2615779138614135 0.10973046108206302 205.27868996359786 191570.32466499752 0.03664942393646048 0.034591466230943675 519.1601889149806 -2.7153013817941516 0.14040404926379102 SPTEYHEPVYANPFYRPT(ph)TPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SPTEYHEPVYANPFYRPTTPQR 22 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 SPTEYHEPVY(0.017)ANPFY(0.188)RPT(0.397)T(0.397)PQR 78.837 0.012105 106420000.0 56218.0 60934.0 58193.0 77738.0 53693.0 61143.0 65044.0 65047.0 70386.0 59698.0 True False 55915.32853440701 62962.15135461912 66386.06857737654 87579.62282934325 60530.48528665554 56916.32832514036 61897.57322779041 69901.13744197336 53040.31342407894 55888.02252997085 1.0004885841938944 1.1265768317505716 1.1878407138448306 1.5670553164119785 1.0830672216787611 1.0183993948724537 1.1075284188950656 1.25073556511125 0.9490461645093136 1.0 15.770251508984305 SPTLYGISHDDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SPTLYGISHDDLK 13 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;;; 208.82 4.2848e-08 1965010000.0 2764380.0 2618060.0 2533970.0 2463200.0 2283130.0 2896520.0 2934590.0 2577640.0 3591620.0 2885170.0 False True 2749496.885231494 2705200.5444493075 2890730.9503379236 2775040.8674424123 2573873.07232827 2696290.3900746666 2792632.670477543 2769996.5857907063 2706513.376242298 2701035.9804816865 1.0179415991123395 1.0015418395007378 1.0702304490673271 1.0273987046064925 0.9529206907748267 0.9982430480595917 1.0339116882032506 1.0255311687098376 1.0020278870034285 1.0 21.365081427429757 3.4441922169964605 24.99985536978356 1.0054650608106592 1.030692843842326 0.2044649087402569 0.025772477887279988 353.2674257654202 268201.76725837175 0.0077165460954997985 0.010448421972562858 2780.9438300076818 -3.4441922169964605 0.02522778303166673 SPTPKS(ph)PPSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPTPKSPPSR 10 1 Q9NVD7;Q9NVD7-2 Q9NVD7 PARVA Alpha-parvin 1 SPT(0.001)PKS(0.999)PPSR;SPT(0.002)PKS(0.997)PPSR;S(0.004)PT(0.016)PKS(0.979)PPS(0.001)R 85.554 0.014772 214522000.0 98385.0 125663.0 120132.0 170833.0 137190.0 140389.0 201910.0 140926.0 242507.0 178766.0 True False 97855.30609160113 129845.61699011223 137045.54139393743 192460.44028409803 154660.333311163 130684.23887015902 192142.841928897 151442.6137277281 182744.3992773151 167357.00083072757 0.584709964960333 0.7758600855989524 0.8188814373684401 1.1499993387116276 0.9241342312748151 0.7808710613925196 1.1481016089864022 0.9049075507806453 1.0919435599957426 1.0 17.352569377134504 4.345788645157614 1.6398891987108821 0.987038565251414 0.5814126961861468 0.5702157829336939 0.1142805881891703 0.36459165748571454 1.5827382041715445 0.030125595669629104 0.18663441283598214 22171.171694008503 -4.345788645157614 -0.4056258690652672 SPVDIVTGGIS(ph)PVRDLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 SPVDIVTGGISPVRDLDR 18 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9;H0YAC6;H0Y9N9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 SPVDIVTGGIS(1)PVRDLDR;SPVDIVTGGIS(1)PVRDLDR;SPVDIVTGGIS(1)PVRDLDR 148.75 2.6944e-07 130221000.0 164171.0 220156.0 203942.0 221375.0 207246.0 203462.0 216202.0 178467.0 225425.0 208721.0 True False 163287.12157711276 227483.75937288735 232655.2609043581 249401.05230191015 233637.54965671914 189397.15083803082 205743.48328815476 191785.11377706347 169872.02929024215 195400.24708496142 0.8356546320338805 1.1641938163669556 1.1906600138698797 1.2763599638308993 1.195687073799512 0.9692779495600105 1.0529335881479005 0.9814988293933627 0.8693542194774225 1.0 17.576072766042103 2.73006318509434 24.512236061966295 0.9806856132020004 1.1454933497538249 0.31046150794317284 0.11668485066241599 600.937247851566 1733498.8387693106 0.038446186629362576 0.036806613707921425 537.1099343034936 -2.73006318509434 0.16480773655182446 SPVGKS(ph)PPSTGSTYGSSQK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 SPVGKS(0.997)PPS(0.002)T(0.001)GSTYGSSQK;SPVGKS(0.977)PPS(0.023)TGSTYGSSQK;SPVGKS(0.972)PPS(0.027)TGSTYGSSQK;SPVGKS(0.843)PPS(0.153)T(0.004)GSTYGSSQK;SPVGKS(0.995)PPS(0.005)TGSTYGSSQK;SPVGKS(0.995)PPS(0.005)TGSTYGSSQK 229.77 4.3955e-20 5742570000.0 2945530.0 2234410.0 2238890.0 2122930.0 2208280.0 2926960.0 3059860.0 2922400.0 3840320.0 2902890.0 True False 2929671.5937591507 2308780.9861206333 2554106.2512192633 2391692.7203310807 2489491.368498979 2724626.1445227223 2911842.881999678 3140484.3276465125 2893924.5936515634 2717625.074910834 1.0780264065142517 0.8495583174571588 0.9398302491387869 0.880067211040711 0.916054017709069 1.0025761719953654 1.0714660049621512 1.155598819218855 1.0648726420610148 1.0 21.373915004135608 2.414559467718264 2.575989251042366 1.0946104005145694 0.9261546824810195 0.48020657106271014 0.06729736309802514 0.1971065941538374 2.673341077277871 0.025113507229985187 0.020347806317390832 259.7523394583586 -2.414559467718264 -0.16845571803354986 SPVGKS(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 SPVGKS(0.988)PPS(0.006)T(0.006)GSTYGSSQKEESAASGGAAYTK;S(0.048)PVGKS(0.82)PPS(0.048)T(0.027)GS(0.027)T(0.027)Y(0.003)GSSQKEESAASGGAAYTK 274.25 1.0599999999999997e-73 826490000.0 560370.0 490660.0 486700.0 455260.0 450000.0 690450.0 690400.0 639830.0 1030660.0 751420.0 True False 557353.0301829599 506991.32148976653 555223.129527764 512895.86932114046 507304.8326410334 642720.8166444753 657002.7144158806 687577.3635909075 776667.6531364367 703463.7322769717 0.7922981734664832 0.720707121387391 0.7892704400419018 0.7291006569180175 0.7211527892120165 0.9136516740729708 0.9339539257969902 0.9774169328749286 1.1040621108106292 1.0 19.424116520339386 2.322990059003998 1.2880223652759781 1.0289940185940167 0.7473330263389448 0.8769840859092148 0.0451941791970442 0.14393766483414788 0.4718664584409764 0.026627068062512124 0.016630000209617597 210.3730284851837 -2.322990059003998 -0.2816609922550719 SPVGKSPPS(ph)TGSTYGSSQKEESAASGGAAYTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 SPVGKS(0.265)PPS(0.589)T(0.133)GS(0.007)T(0.007)YGSSQKEESAASGGAAYTK 217.39 4.2581999999999996e-36 415630000.0 225160.0 177630.0 167130.0 183890.0 155980.0 238470.0 239510.0 212160.0 369970.0 261770.0 True False 223947.76357762766 183542.3071703975 190660.4512799982 207170.45514533346 175843.12843410735 221985.13019799846 227923.9862829481 227992.4565266507 278795.8508440096 245063.61448742755 0.9138352261964079 0.7489578065446093 0.7780039141215703 0.8453741922424877 0.7175407446833711 0.9058265571668002 0.9300604937198511 0.9303398915563916 1.137646857233931 1.0 17.902796772206287 1.914376620132871 1.1263121267869194 1.0506475356353957 0.8014607739283575 0.6566432746355625 0.0697382940317826 0.2858182677498081 0.6675271356148317 0.05328888143733811 0.023373057579399094 82.10632616660362 -1.914376620132871 -0.24918676170703824 SPVPSPGSSS(ph)PQLQVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SPVPSPGSSSPQLQVK 16 0 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 SPVPSPGS(0.003)S(0.079)S(0.917)PQLQVK;SPVPSPGS(0.025)S(0.093)S(0.882)PQLQVK 314.16 9.734199999999996e-58 531860000.0 533890.0 511040.0 516630.0 495560.0 496940.0 613990.0 589700.0 547780.0 692940.0 598550.0 True False 531015.5955607557 528049.6574697968 589367.01337154 558297.8451890888 560222.3634058562 571546.3164769948 561173.9581272373 588658.1251704784 522174.2219202857 560350.0265555637 0.9476498088612133 0.9423567992236653 1.0517836806296628 0.9963376795409657 0.9997721724928038 1.0199808858585302 1.0014703873161892 1.050518599577701 0.9318715038349472 1.0 19.095968772719388 4.262927181080596 24.837210288554164 1.0099932511836918 0.9450032090135444 0.37123628968119926 0.03173163200802964 196.68306440392465 200478.16915923712 0.0072487383289828716 0.019831086110177445 18320.072207454792 -4.262927181080596 -0.06499004217014737 SPVS(ph)PLAAQGIPLPAQLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 1 S(0.418)PVS(0.582)PLAAQGIPLPAQLTK 164.2 2.54e-11 82653000.0 116250.0 96374.0 89552.0 93769.0 89779.0 112190.0 104570.0 118970.0 152250.0 124380.0 True False 115624.12291658926 99581.75033068682 102160.14320006223 105640.14578564784 101211.82348817633 104434.56936685306 99511.54960380733 127848.14551741928 114730.02754547786 116441.96191292451 0.9929764237659716 0.8552050196917346 0.8773481786270293 0.907234334171093 0.8692040380070434 0.8968808808370079 0.854602138000923 1.0979559551995897 0.9852979601225987 1.0 16.829251526964455 1.7458285444931714 24.999999999999996 1.0324085253125674 0.8910085851275965 0.6372912309638128 0.04640125010356908 0.8522144025117787 2939.8728376566132 0.019859143704685778 0.011012924227722232 55.696582048763965 -1.7458285444931714 -0.14139994018497093 SPVSESVS(ph)PVVPDYLPTENGDFLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SPVSESVSPVVPDYLPTENGDFLSSK 26 0 A0A0C4DGH6;A0JNW5 A0A0C4DGH6 UHRF1BP1L UHRF1-binding protein 1-like 1 S(0.001)PVS(0.004)ES(0.019)VS(0.977)PVVPDYLPTENGDFLSSK 143.35 1.6975999999999998e-07 37554000.0 69768.0 80920.0 70141.0 65788.0 81125.0 93823.0 87408.0 93798.0 121810.0 96823.0 True False 69392.37683995355 83613.37328282704 80016.24312349873 74116.75405460446 91455.78788445286 87337.23684558574 83179.74110901404 100797.68305659313 91791.55767037549 90643.67324565911 0.7655512442869444 0.9224402574266953 0.882755963636223 0.8176715638358564 1.0089594188950484 0.9635227006841128 0.9176563364062199 1.112021164272712 1.0126637015426927 1.0 16.467918705689332 2.9721784243532903 0.6712963414803753 1.0431803179522239 0.8309983363816081 0.5639100141814571 0.0637728544174232 0.5559594007196146 0.5535314523125321 0.04410408746663907 0.05914938466153282 937.9472714633355 -2.9721784243532903 -0.21218198157061574 SPWSNKYDPPLEDGAMPSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPWSNKYDPPLEDGAMPSAR 20 1 P47756-2;B1AK88;B1AK87;P47756;B1AK85;A0A6I8PRV6 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 124.2 2.4913e-05 1476740000.0 3298600.0 3846500.0 3520300.0 3647200.0 3649500.0 4168700.0 4054400.0 3671100.0 4766000.0 4039100.0 False True 3280840.704108914 3974528.4272416434 4015927.6410038806 4108935.1460441593 4114242.192718785 3880527.5810642666 3858273.1826879233 3945056.1234680815 3591483.1611280697 3781321.1799525106 0.8676440185782149 1.0510951696760018 1.062043515979332 1.0866400790889081 1.0880435691449133 1.0262359097232259 1.020350559784075 1.0433009881264905 0.9497958491780841 1.0 21.85045896428418 4.740652964249489 24.931896810054702 1.0407134818064214 0.8676439568447575 0.6220812021597992 0.03932770991540925 117.90555117294056 1404832.1020847566 0.009494717030447351 0.06273992301361492 55036.773315784645 -4.740652964249489 -0.17306952496166395 SPYLYPLYGLGELPQGFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SPYLYPLYGLGELPQGFAR 19 0 P50395;P50395-2;Q5SX87;Q5SX91;P31150 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 ; 220.19 6.8813999999999985e-19 229018000.0 152348.0 191765.0 159284.0 176389.0 164550.0 158785.0 194637.0 169692.0 229140.0 183095.0 False True 151527.77529545408 198147.78210060947 181709.80267865278 198719.82931442827 185504.46713573774 147808.5666896849 185221.66472445478 182355.27871851643 172671.51731869185 171409.72034448403 0.8840092323289894 1.1559891802074564 1.0600904214385776 1.1593264892741135 1.0822283984999646 0.8623114628075489 1.080578536340954 1.063856112430701 1.0073612918314783 1.0 17.387089398911446 SPYQEFTDHLVK ddPTM_BT-474_Trastuzumab_2h_R1 6 SPYQEFTDHLVK 12 0 P15880;H0YEN5;E9PQD7 P15880 RPS2 40S ribosomal protein S2 0 ;;;;; 184.98 1.3631e-05 6232470000.0 4721200.0 4610470.0 4443880.0 4275440.0 3964410.0 5205680.0 5173290.0 4508180.0 6618880.0 5460000.0 False True 4695781.5837746365 4763926.706862031 5069539.67710261 4816710.265629263 4469254.114600971 4845823.594452621 4923038.198813054 4844603.283674191 4987745.712448034 5111538.125458818 0.9186631241947623 0.9319947518604128 0.991783598727939 0.9423211071514621 0.8743462349113958 0.9480167173785199 0.9631226605340356 0.947777980867419 0.9757817686237699 1.0 22.285326050715824 1.1568989106799774 0.9576453944570055 0.9996824278409084 0.9362740832660238 0.3512066466994319 0.028106945052066935 0.6366268343880437 1.2652999393229551 0.027658290466983853 0.009577614466070125 14.35155338011963 -1.1568989106799774 -0.06340834457488465 SQAAPGSS(ph)PCR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQAAPGSSPCR 11 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 SQAAPGS(0.111)S(0.889)PCR 113.54 0.0014455 100600000.0 145240.0 154140.0 133150.0 153070.0 158110.0 170520.0 183340.0 151860.0 186020.0 172750.0 True False 144458.0439776811 159270.4567204023 151896.36263945274 172448.6463053794 178244.3713086084 158732.35376090376 174471.14377318582 163192.56432945502 140177.86354029423 161724.94710128393 0.8932329029436069 0.9848230565235896 0.9392265408769878 1.0663082560625572 1.1021451823198234 0.9814957840826747 1.0788140413730931 1.0090747732769512 0.8667671008883042 1.0 17.303182715296867 4.618811140048994 1.3111499928131656 1.0172319925462265 0.8669976960647587 0.21151903755862078 0.06520988542882551 1.6448922350166468 2.928781572205026 0.018464358532490528 0.31209320445817046 41572.97843860453 -4.618811140048994 -0.1502342964814678 SQAEEEIDEIRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQAEEEIDEIRK 12 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 0 150.11 0.00010878 96684000.0 158520.0 159770.0 132490.0 138020.0 140280.0 171220.0 178470.0 165470.0 220790.0 163460.0 False True 157666.5459332277 165087.84786699567 151143.44037627577 155493.3178484905 158143.82649529816 159383.96440852655 169836.72427839262 177818.21163963486 166379.26293442433 153027.8428548534 1.030312804466401 1.078809220512774 0.9876858848466878 1.0161112837222412 1.033431717686155 1.0415357194814667 1.1098419811058986 1.1619990736476307 1.087248306128413 1.0 17.22343464430978 2.2766104910543468 4.7266405051535445 1.1101746150468499 1.030001748445703 0.25144403026824547 0.044443235305080236 0.18877270761919104 9.590393129001484 0.015805346840606395 0.012659491772797555 189.0647179109503 -2.2766104910543468 -0.08017286660114697 SQAFIEMETR ddPTM_BT-474_Trastuzumab_2h_R1 5 SQAFIEMETR 10 0 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;H0Y8T4;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;;; 194.76 9.9578e-07 1193568000.0 748550.0 949910.0 1009350.0 1014150.0 980620.0 1014290.0 1054950.0 877660.0 1086090.0 981730.0 False True 744519.8899717238 981527.1801172796 1151457.7065725252 1142541.286016857 1105496.1444098887 944174.5196818381 1003918.0381996429 943155.4458671764 818437.6723603816 919075.1508986618 0.8100750947773315 1.067950949557882 1.2528439110192917 1.2431423968972422 1.2028354192026043 1.0273093759075462 1.0923133295661651 1.0262005723307492 0.8905013605907222 1.0 19.809823307002333 1.6028943663839346 2.021367857128032 0.9451306453182092 1.1146557954299727 0.19098781147901345 0.12372772622682729 0.48244424705904154 4.175405774790304 0.10085374961221671 0.03670018933885973 40.07692265162492 -1.6028943663839346 0.1695251501117635 SQAIHQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQAIHQLK 8 0 Q15046;Q15046-2;H3BVA8 Q15046 KARS Lysine--tRNA ligase 0 ; 85.73100000000002 0.016535 394670000.0 1597150.0 1727260.0 1707080.0 1601550.0 1540450.0 1881050.0 1932970.0 1680780.0 2511500.0 1940340.0 False True 1588551.121860048 1784750.8049492806 1947422.0257946455 1804306.0657893792 1736617.17653751 1751017.44101541 1839464.856437522 1806208.3384279045 1892574.4773758152 1816505.8399913486 0.8745092291404986 0.9825186165973354 1.0720703357628185 0.9932839333992851 0.9560206955050478 0.9639481483988785 1.0126391096250387 0.9943311486609406 1.0418763516801184 1.0 20.792734573290076 4.71549500539636 4.320462639595152 1.0019924827304878 0.8674634926263548 0.5889998642785516 0.03223900790933519 0.13464696855457906 5.763919039775243 0.008020669336617646 0.05289454658467432 51939.17002084697 -4.71549500539636 -0.134528990104133 SQANGAGALSYVS(ph)PNTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQANGAGALSYVSPNTSK 18 0 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-2;O95453-3;O95453;F5H1Z4;A0A494C002;A0A494C156;A0A494C1G3;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C1N1;A0A494C0Q2 A0A494C0Q6;A0A494C0Q2 PARN Poly(A)-specific ribonuclease PARN 1 SQANGAGALSYVS(1)PNTSK 253.83 1.6975999999999997e-30 77874000.0 130570.0 98763.0 91871.0 78746.0 90314.0 135730.0 142990.0 122780.0 165460.0 150040.0 True False 129867.02562769089 102050.26675150574 104805.63824295282 88715.23552599073 101814.95256698284 126347.30457405254 136073.02742515446 131942.4670642071 124684.60005040908 140464.31874429324 0.9245552663385349 0.7265209247715219 0.7461370914683687 0.6315855607963431 0.7248456652705573 0.8994975072926537 0.9687373180719806 0.9393308439020756 0.8876603052294713 1.0 17.099844172795354 2.6439997406243942 4.124940399455072 0.9429132815962465 0.7425473107534288 0.6268377187876607 0.07308697058558837 0.15265083271265217 4.641401416352362 0.024713462574599464 0.023294014563719972 440.55460039211084 -2.6439997406243942 -0.2003659708428177 SQAPGQPGASQWGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQAPGQPGASQWGSR 15 0 K7EQ55;K7EK33;Q96EP5;Q96EP5-2;K7EQ02 K7EQ55 DAZAP1 DAZ-associated protein 1 0 ; 143.25 1.0341e-05 104029000.0 62872.0 78507.0 78057.0 65909.0 63857.0 75356.0 71523.0 59288.0 79069.0 75285.0 False True 62533.50413773587 81120.05803651632 89046.74711639325 74253.072642198 71988.81043990773 70146.81708894347 68063.15924560685 63712.37161836387 59583.50442031795 70480.24684526873 0.8872486538678133 1.150961605094915 1.2634284228868429 1.0535302579914636 1.0214040623034546 0.9952691743963771 0.9657054606382364 0.9039748648757864 0.8453929588403213 1.0 16.10493135661455 2.6677949368775993 1.2268177796295252 0.9135913766722187 1.103817277406813 0.35556158552433226 0.0955894418871275 0.46558957969998555 1.4387796579380827 0.04789490104501092 0.04187182177079577 465.36630716773215 -2.6677949368775993 0.19022590073459422 SQASMVINS(ph)DTDDEEEVSAALTLAHLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.002)QAS(0.006)MVINS(0.415)DT(0.415)DDEEEVS(0.109)AALT(0.054)LAHLK;SQASMVINS(0.922)DT(0.078)DDEEEVSAALTLAHLK;SQASMVINS(1)DTDDEEEVSAALTLAHLK;S(0.015)QAS(0.015)MVINS(0.931)DT(0.039)DDEEEVSAALTLAHLK 284.44 1.5477999999999994e-61 137772000.0 160042.8 186786.2 160058.1 183689.8 165511.7 206885.7 215231.8 183385.2 209885.9 223479.8 True False 159181.14734722683 193003.2657523577 182592.889230055 206944.90984586038 186588.63393029524 192584.17851555377 204820.2155686786 197070.33483517703 158162.3322719702 209217.12783331735 0.7608418536079223 0.9225022241301525 0.872743503942594 0.9891394265326726 0.8918420583564737 0.9204991030609357 0.9789839755942842 0.9419416893638954 0.7559721993601674 1.0 17.674641438969527 4.738885267594779 22.86243972649135 0.9211302074023754 0.760841723098413 0.3334620114407064 0.06715980337346422 8.899451797467892 625725.162405338 0.015114954053862121 0.08856833099613153 54813.21396258282 -4.738885267594779 -0.16028848430396236 SQDATFS(ph)PGSEQAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SQDATFS(0.826)PGS(0.174)EQAEK 176.94 2.1684e-11 0.0 124680.0 107980.0 95331.0 90066.0 94161.0 127830.0 124280.0 113440.0 157050.0 133140.0 True False 124008.73673325033 111574.0490247115 108752.77616809387 101468.34636532504 106151.84521402743 118993.41297945278 118268.10160429553 121905.46883664807 118347.13186218265 124642.89121311117 0.9949122290594449 0.8951497188391201 0.8725148711622166 0.8140724703812999 0.8516478090397612 0.954674685586368 0.9488555701270104 0.9780378780544915 0.9494896235986359 1.0 16.927441078052052 2.638887044778125 5.610796207291292 0.9656890793378566 0.8816806274492514 0.44177606399129743 0.04526088091619803 0.228423112809531 10.505873707750439 0.01563565999977783 0.014711650212337462 435.39861656257517 -2.638887044778125 -0.08400845188860528 SQDATFS(ph)PGSEQAEKS(ph)PGPIVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 S(0.001)QDAT(0.003)FS(0.996)PGS(0.001)EQAEKS(0.999)PGPIVS(0.001)R 130.49 1.9582e-05 350640000.0 635550.0 546230.0 540660.0 509900.0 584540.0 710090.0 757250.0 613220.0 1054000.0 812760.0 True False 632128.2694162425 564410.9353469922 616780.2284990364 574453.2877187745 658977.7041599762 661003.1496720621 720618.9245240806 658981.5902680657 794255.8228764122 760888.9609611554 0.8307759763234542 0.7417783202348317 0.8106047795987463 0.7549765040527395 0.8660629053253122 0.8687248515697777 0.9470750155368194 0.8660680126514646 1.0438524720783278 1.0 19.53732640627464 2.1690519568071007 0.5804838200580189 1.0077886407882157 0.7732973578341605 0.7458443378755271 0.04722404088503845 0.40468645679831045 0.27571980077779884 0.04163667923983029 0.030417671437307676 147.58830899429734 -2.1690519568071007 -0.2344912829540552 SQDATFSPGSEQAEKS(ph)PGPIVSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR 241.04 1.6959000000000001e-37 6142530000.0 3137310.0 2831205.0 2755700.0 2671180.0 2642832.0 3312750.0 3340730.0 2977170.0 4553230.0 3146030.0 True False 3120419.071547912 2925439.9469254334 3143678.607026216 3009351.1141177434 2979380.9899074836 3083747.389874698 3179126.127072079 3199341.543162939 3431147.4766561324 2945247.67194821 1.059475948752327 0.9932746827333288 1.067373259290873 1.0217650429809628 1.0115892861182352 1.047024811952359 1.0794087564694226 1.0862724970924609 1.1649775702518463 1.0 21.489957527681216 2.25499954899178 2.595093857644683 1.091539962124326 1.030020806553722 0.24597827405139316 0.042268066362461616 0.3312848330085278 4.580918923260103 0.016772676590731086 0.012058468806467467 179.8869047029647 -2.25499954899178 -0.061519155570604056 SQDDQHMLPFWTDLCSIFGSNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQDDQHMLPFWTDLCSIFGSNK 22 0 Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8;K7EMK2 Q9NX02 NLRP2 NACHT, LRR and PYD domains-containing protein 2 0 ; 181.69 4.8757e-17 181481000.0 157583.0 166263.0 155793.0 157800.0 151015.0 171527.0 175740.0 166605.0 211169.0 184340.0 False True 156734.5906371171 171796.96344689402 177727.30022296862 177777.46382040152 170245.86511396797 159669.74222112665 167238.78480800506 179037.91110304816 159129.22946962912 172575.2633785861 0.9082100619095183 0.9954900840569214 1.029853854738615 1.0301445313770323 0.9865021311918382 0.9252180126815277 0.9690773841736856 1.0374482854491414 0.9220859719654039 1.0 17.396866160514495 2.997948014037529 24.914009443686677 0.9760222953681453 0.9958178845964142 0.03447338981797554 0.04460775771289997 319.5949714714509 3880417.338219822 0.013614776746384045 0.016020807975965775 995.2862723615933 -2.997948014037529 0.01979558922826885 SQDIYLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SQDIYLR 7 0 J3QQ67;Q07020;F8VYV2;G3V203;A0A075B7A0;F8VXR6 J3QQ67 RPL18 60S ribosomal protein L18 0 ;;;;; 209.44 0.00034887 5507880000.0 3619080.0 4329400.0 3988520.0 3927990.0 3648590.0 3850250.0 4012790.0 3586290.0 4480860.0 4084880.0 False True 3599595.2753975894 4473501.461822432 4550068.947162684 4425273.131254115 4113216.3096127682 3584091.2800136027 3818676.0173535673 3853917.1706116213 3376612.0934478217 3824179.461158281 0.9412725819900019 1.1697938099556346 1.1898157482872267 1.157182390680424 1.0755814028578414 0.9372183801562598 0.9985608824427274 1.007776232720086 0.8829638168772292 1.0 21.866718797048687 2.9083499840515925 4.2578852705577495 0.9726278405305286 1.1234394952528084 0.4872992023792022 0.07283039902259775 0.19649101808247965 6.2869266159980715 0.022626802203491038 0.024460968578133305 809.7481865144572 -2.9083499840515925 0.15081165472227975 SQDLHCGACR ddPTM_BT-474_Trastuzumab_2h_R1 3 SQDLHCGACR 10 0 Q9Y2B0;F8VXJ7;F8W031;F8W1U5;F8VP03;Q9Y2B0-2 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ;; 103.34 0.0028272 846600000.0 1313640.0 1857720.0 1986850.0 1640890.0 1212630.0 1284030.0 1598130.0 1180270.0 2220510.0 1551190.0 False True 1306567.5081991246 1919553.0871845456 2266581.2099902127 1848626.5057557574 1367051.24267888 1195268.0283814971 1520822.3464505356 1268347.740689621 1673295.0638095832 1452191.726159428 0.8997210799806498 1.321831720017532 1.5608002505182828 1.2729906612570847 0.9413710449200006 0.8230786657506926 1.0472600270713655 0.8734024012407686 1.1522549217622258 1.0 20.469800507588516 3.2488139590451244 9.10402455780604 0.9584955396984445 1.2896378481921245 0.3992167599860087 0.17316891187309105 0.14513754057140651 95.68070356523725 0.048955193918911004 0.06383723278252168 1773.4296250050409 -3.2488139590451244 0.33114230849368 SQDQDS(ph)EVNELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 SQDQDS(1)EVNELSR;SQDQDS(1)EVNELSR 284.44 1.1867000000000001e-32 3256500000.0 2574500.0 2648900.0 2505400.0 2431300.0 2510300.0 2815400.0 2738100.0 2580600.0 3223900.0 2460900.0 True False 2560639.178053838 2737067.0352061377 2858138.5426728143 2739102.330713196 2829971.8252861938 2620778.0247387295 2605647.6424422376 2773177.476021278 2429413.043046743 2303843.2551175132 1.1114641468623812 1.1880439474891822 1.2405959200236598 1.18892738237675 1.2283699505163792 1.137567852724881 1.131000399725254 1.203717948198618 1.0545044840400069 1.0 21.135611133866046 1.108088536208141 4.003969600035591 1.0018742318692426 1.180493551715599 0.7035216217207678 0.0399354245991556 0.10911217446621747 2.9769385314255374 0.03860323716502825 0.009966086401878526 12.825920279780284 -1.108088536208141 0.17861931984635637 SQDSYPGSPSLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 SQDSYPGSPSLS(1)PR 147.64 8.3694e-06 238780000.0 147420.0 226380.0 203430.0 228470.0 220360.0 201160.0 192230.0 179710.0 154640.0 182640.0 True False 146626.30709990166 233914.92145040032 232071.17575474197 257394.2785744434 248421.53982395155 187254.2826797056 182931.10051008762 193120.87274888967 116531.04406983712 170983.75883402905 0.8575452317797578 1.3680534516582796 1.3572702889284907 1.5053726759176673 1.4528955353302884 1.0951583001603682 1.0698741316574731 1.1294691031815993 0.6815328243131663 1.0 17.383499769358586 1.95264109204805 1.195918725982972 0.8966679094097503 1.3122963515651382 0.3958768664666532 0.19752868931453677 0.48393064869478625 1.277560022364061 0.153078501134671 0.06874958458952794 89.66874512676279 -1.95264109204805 0.41562844215538797 SQDVAVS(ph)PQQQQCSK ddPTM_BT-474_Trastuzumab_2h_R1 9 SQDVAVSPQQQQCSK 15 0 Q96F86;H3BPW9;H3BQ37;H3BTD6 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 1 SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK 447.97 2.9697999999999993e-175 11890207000.0 6481057.0 5606380.0 5713368.0 5587680.0 5971893.7 7161097.0 7131733.0 6749605.0 7945336.0 7226003.0 True False 6446163.70922512 5792984.969171725 6517760.552915106 6295079.7150822645 6732378.964507862 6666067.219799127 6786743.828924267 7253294.798899726 5987314.404847796 6764833.302047583 0.9528932083624281 0.8563381698434906 0.9634768902498021 0.9305594733837516 0.9952024926423689 0.9854000715407782 1.0032388864438169 1.0722059916397784 0.8850645888104224 1.0 22.68962295330095 3.4034200613317807 1.3082578301924292 1.002760139974994 0.9111416695535236 0.2547572367309002 0.051099459004633044 0.4943727365393021 1.742320379553916 0.017334674898106413 0.031162152978959176 2531.745585156034 -3.4034200613317807 -0.09161847042147031 SQDVELWEGEVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQDVELWEGEVVK 13 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 165.73 8.1045e-05 25104000.0 42684.0 53500.0 44902.0 47113.0 52430.0 51852.0 48871.0 45575.0 63995.0 42874.0 False True 42454.1940866382 55280.715158567036 51223.8113048195 53077.50096939531 59106.649723043054 48267.59328647884 46506.92302465016 48976.03792516078 48224.28973906643 40137.744613721865 1.0577124971821263 1.3772750733898549 1.276200538864051 1.322383743287104 1.4725951916799107 1.2025487169495226 1.1586830170011813 1.2201990519521462 1.2014698434894127 1.0 15.292671931825081 0.8524102021708466 0.6005399904834007 1.0007462772929454 1.294562093590007 0.36584296844099917 0.1069980696101332 1.058520724668455 0.856030706691805 0.11406345440636512 0.04661666437243027 7.118855902311687 -0.8524102021708466 0.29381581629706166 SQDVLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQDVLHR 7 0 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;Q7Z3U7-3 A0A286YFF8 MON2 Protein MON2 homolog 0 79.906 0.031354 20592000.0 55025.0 70843.0 63676.0 68449.0 66194.0 61361.0 65679.0 56541.0 68383.0 69630.0 False True 54728.7515138522 73200.96642950208 72641.02731828611 77114.6363817659 74623.41353742353 57119.25849825713 62501.85585185484 60760.37652938045 51530.92593525406 65186.153786757845 0.839576326176342 1.1229526851509437 1.1143628377878414 1.1829910479766832 1.144773992672395 0.8762483315875671 0.9588210412953018 0.9321055622969359 0.7905195036330284 1.0 15.992277933199524 2.7352535206574764 24.96184400290644 0.9134210398976916 1.090793181519759 0.40998972508067344 0.10124566187889532 278.5622285354343 2102572.066503174 0.03211500185101156 0.03145375043903243 543.567548020651 -2.7352535206574764 0.17737214162206727 SQEADVQDWEFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SQEADVQDWEFR 12 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ;;; 210.95 8.7308e-08 2134130000.0 2295100.0 2532420.0 2514470.0 2553190.0 2520870.0 2771550.0 2660500.0 2427180.0 2890440.0 2742490.0 False True 2282743.436609583 2616710.0688197836 2868485.5198349594 2876423.592215532 2841887.852132894 2579959.2720269337 2531801.4509030282 2608308.496570306 2178129.79191167 2567461.9402361843 0.8891050733159419 1.019181639194647 1.1172455859544634 1.1203373834437156 1.1068860681422468 1.0048675821031254 0.9861106064419886 1.0159093132770507 0.8483591354469313 1.0 21.291911459678943 1.8507032273020532 1.3787477721345185 0.9402287664966018 1.052224605538969 0.22990834791162662 0.07580317953975593 0.6215939055681002 2.2107204896273824 0.05993348965436133 0.02520103135919916 70.90930476104985 -1.8507032273020532 0.1119958390423672 SQEEPKDT(ph)FEHDPSESIDEFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQEEPKDTFEHDPSESIDEFNK 22 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 S(0.191)QEEPKDT(0.803)FEHDPS(0.004)ES(0.002)IDEFNK;S(0.144)QEEPKDT(0.639)FEHDPS(0.194)ES(0.022)IDEFNK 152.92 6.0923e-08 596750000.0 973330.0 623610.0 504770.0 435370.0 496310.0 853650.0 792500.0 745240.0 1437070.0 804700.0 True False 968089.6994271281 644366.4818697937 575837.2284605075 490487.79736050783 559512.1366401586 794639.184775953 754163.7473560045 800853.5930520418 1082923.3542514301 753343.3570616691 1.2850577234835558 0.8553423559518366 0.7643755308422652 0.6510813333160596 0.742705343314465 1.0548167410347302 1.0010889991750047 1.0630658457992928 1.4374897503248063 1.0 19.522948037376604 2.0151328957582635 1.386284095615388 1.1901849821586201 0.8549237120652361 0.29676273564526656 0.1952185244795282 0.5210107129673082 1.8662749436961261 0.13793254603148572 0.06588418719664654 103.54589725769338 -2.0151328957582635 -0.335261270093384 SQEEPKDTFEHDPSESIDEFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQEEPKDTFEHDPSESIDEFNK 22 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 256.11 2.5368e-37 363890000.0 490120.0 416920.0 422190.0 341100.0 328660.0 533680.0 550790.0 493430.0 813470.0 488980.0 False True 487481.2483774508 430796.9301665382 481630.6822587357 384283.2250262289 370512.9028795599 496787.9577475901 524146.1834778711 530252.2521867707 613001.2184395407 457772.8777631605 1.0648976207578218 0.9410713283660748 1.0521171210757458 0.8394626324389772 0.8093815096473527 1.085228028744453 1.144991782909975 1.1583304252924942 1.3390946650987288 1.0 18.804272462722004 2.506444735060396 4.815709124710601 1.1666463115005976 0.941178536702898 0.48745301170126387 0.10666130112146546 0.16602018658808224 9.76189732838531 0.03629047437691788 0.032661544377712445 320.9554355286732 -2.506444735060396 -0.22546777479769964 SQEIDDHQHEMSVLQNAHQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQEIDDHQHEMSVLQNAHQQK 21 0 Q15643-2;Q15643 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 240.13 2.0733e-30 353810000.0 224110.0 192440.0 185210.0 192960.0 204850.0 243020.0 249700.0 23170.0 247860.0 126720.0 False True 222903.41666096187 198845.24906756356 211285.95812582117 217388.71621536557 230936.43325892367 226220.5994075461 237621.05705336813 24899.06305487604 186778.22415384004 118632.62110954964 1.8789386475337573 1.6761430979759158 1.7810106204322342 1.8324531160330766 1.9466520346513176 1.9069004569885195 2.0029993001161146 0.20988378088589432 1.5744255029260652 1.0 16.856141245213493 1.7583649366452125 24.999999999996508 0.8669281550242126 1.8545567459702432 0.6398702796246336 0.3196167108592947 4.687115218472914 5922.216260385684 0.13583183690930098 0.07532698217153992 57.327755244364326 -1.7583649366452125 0.9876285909460306 SQEPIPDDQKVS(ph)DDDKEKGEGALPTGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQEPIPDDQKVSDDDKEKGEGALPTGK 27 3 E5RJU9;Q86UE4;H0YBJ8 E5RJU9 MTDH Protein LYRIC 1 SQEPIPDDQKVS(1)DDDKEKGEGALPTGK;SQEPIPDDQKVS(1)DDDKEKGEGALPTGK 137.65 5.0604e-05 3050730000.0 1886980.0 925070.0 714180.0 621770.0 641420.0 1460240.0 1393910.0 1189150.0 2774900.0 935660.0 True False 1876820.709343185 955860.3957333755 814730.3362361573 700486.0182484852 723101.0350058042 1359297.0458352205 1326481.2480466974 1277890.4113813487 2091063.0767549884 875945.3777411728 2.1426229957203495 1.0912328782398304 0.930115458040463 0.7996914374442502 0.8255092764693696 1.5518057180009117 1.5143424256285651 1.4588699750624678 2.387207159135056 1.0 19.740481383396947 2.619059503804174 7.229217657157721 1.5967106176044004 1.1223969312446398 0.16338602967160487 0.47731845075216683 0.4526637172088311 25.143593783898226 0.1545054587985689 0.14541912301965376 415.96759938069016 -2.619059503804174 -0.47431368635976057 SQEPIYSEEASGPRS(ph)PLDMVSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQEPIYSEEASGPRSPLDMVSSR 23 1 Q5T011-5;Q5T011 Q5T011-5 SZT2 Protein SZT2 1 SQEPIYSEEASGPRS(1)PLDMVSSR;SQEPIYSEEASGPRS(0.997)PLDMVS(0.001)S(0.001)R 210.93 3.4805999999999996e-25 384890000.0 163536.0 206130.0 177131.0 198579.0 194141.0 198535.0 168486.0 164630.0 189641.0 175654.0 True False 162655.54034655768 212990.9124417835 202069.50514974774 223719.0810392363 218863.70558613975 184810.74275111995 160335.68850097634 176915.52657420136 142906.5166092083 164443.6113350446 0.9891265402530972 1.2952215699509693 1.2288072702200785 1.3604607635587695 1.3309346821641934 1.1238548050041206 0.9750192616136445 1.0758431120424978 0.8690305172029111 1.0 17.327233434727574 2.45730963083657 3.824399469570646 0.9967913399352593 1.2494499576908913 0.568999699765278 0.10628929824545014 0.16696731015094918 5.405009051782102 0.037753015129541524 0.03232819412480315 286.62207175562247 -2.45730963083657 0.25265861775563203 SQEPLDLVLVPDDCRPGT(ph)PPSDLIEIQVVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SQEPLDLVLVPDDCRPGTPPSDLIEIQVVK 30 1 Q8NCA9 Q8NCA9 ZNF784 Zinc finger protein 784 1 SQEPLDLVLVPDDCRPGT(0.975)PPS(0.025)DLIEIQVVK;SQEPLDLVLVPDDCRPGT(0.826)PPS(0.174)DLIEIQVVK;SQEPLDLVLVPDDCRPGT(0.94)PPS(0.06)DLIEIQVVK;SQEPLDLVLVPDDCRPGT(0.747)PPS(0.253)DLIEIQVVK 152.89 2.6033e-08 808890000.0 628700.0 611710.0 535560.0 543790.0 514290.0 691500.0 641410.0 601080.0 837920.0 686320.0 True False 625315.1490551364 632070.3975634958 610962.19282903 612633.7582439547 579781.7830643496 643698.2326159088 610382.5478758537 645935.641822394 631425.8435527546 642518.4700118868 0.9732251728787934 0.9837388761007949 0.9508865835681377 0.9534881670135036 0.9023581579742345 1.0018361536034912 0.9499844383688479 1.0053184024584445 0.9827357080350905 1.0 19.293378401446137 1.903696594360103 1.590865330013374 0.9967224112892304 0.957164040913362 0.26782739080184004 0.02586195765072143 0.5052732855049727 2.389530318015054 0.017788133737271897 0.007985189188783576 80.11181928111216 -1.903696594360103 -0.0395583703758684 SQESDGVEY(ph)IFISK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQESDGVEYIFISK 14 0 S4R337;Q5T2T1-2;Q5T2T1;U5GXS2 S4R337 MPP7 MAGUK p55 subfamily member 7 1 SQESDGVEY(0.992)IFIS(0.008)K;SQESDGVEY(1)IFISK 220.4 4.794e-11 103758000.0 130331.0 126677.0 127107.0 108036.0 114344.0 155329.0 148256.0 137206.0 166152.0 145548.0 True False 129629.31237713552 130893.36736713644 145002.5607661505 121713.34652281937 128905.03063001407 144591.47183513618 141084.29088708086 147445.00843795072 125206.0659227341 136259.00203008807 0.9513449419548177 0.9606217968500399 1.0641686685341474 0.8932499483296025 0.9460294638114982 1.0611517013988416 1.0354126243778543 1.0820937056723239 0.9188828925599108 1.0 17.05599201996053 2.7449307450241864 24.85871230880474 1.0306097764889355 0.9646824919317536 0.1837251040248581 0.05706903807631387 703.378539020346 2744862.343390038 0.017577564387708366 0.018230729825907666 555.8156168017407 -2.7449307450241864 -0.06592728455718189 SQESGYYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SQESGYYDR 9 0 P43243;A0A0R4J2E8;D6REM6;D6R991;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;;; 149.82 0.00020176 6322270000.0 4176550.0 5508910.0 4744580.0 4823290.0 5037730.0 5062700.0 5041850.0 4467630.0 5410510.0 5014290.0 False True 4154063.9188583307 5692270.739143587 5412575.62337135 5433918.019456938 5679255.054534922 4712727.465313909 4797956.453762606 4801027.236765461 4077162.3076195996 4694273.719250349 0.8849215378777939 1.212598812847371 1.15301662133066 1.1575630958998926 1.2098261401429036 1.0039311184577677 1.0220870662243389 1.022741221304871 0.8685395337941011 1.0 22.16247053600245 2.627679788849456 6.750461513299597 0.9897381061129578 1.1317787043499625 0.346855785599267 0.09574867890781324 0.2843870377179156 15.280683786730433 0.030346536993502624 0.02855666307212416 424.3066016324692 -2.627679788849456 0.14204059823700477 SQET(ph)PEKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQETPEKPR 9 1 J3QQY0;Q68DK7;J3KSZ8;Q68DK7-2;Q68DK7-3;J3KTC2 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 SQET(1)PEKPR 96.82 0.011494 250150000.0 356120.0 303040.0 253510.0 241470.0 236770.0 413290.0 395860.0 310940.0 543960.0 430320.0 True False 354202.6894886514 313126.5032084518 289202.00445157837 272040.077241523 266921.2560542608 384720.2350800134 376710.73946794635 334143.9217213271 409908.3466905625 402856.6091845132 0.8792276989215839 0.7772653993248403 0.7178782670017468 0.6752776820323316 0.6625713714727903 0.9549805720173921 0.9350988189830299 0.8294363654545013 1.01750433614661 1.0 18.619906898723418 2.729272876474665 24.873882484746076 0.9270721975599518 0.7392823663137166 0.6502912509151104 0.07439033904090248 444.58292066074614 1190653.8759607552 0.025265452218395438 0.024119574719170617 536.1334157523312 -2.729272876474665 -0.18778983124623527 SQGDEAGGHGEDRPEPLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 SQGDEAGGHGEDRPEPLSPK 20 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK 222.4 4.335899999999999e-25 5218420000.0 6089780.0 4600860.0 4698980.0 4351820.0 4539480.0 6194710.0 6001740.0 5476250.0 8181000.0 5815310.0 True False 6056993.301118162 4753996.843821403 5360555.539733657 4902759.9657978425 5117555.870394034 5766484.278478818 5711412.907326717 5884915.582834054 6164902.169783609 5444171.937062626 1.112564660179741 0.8732268008395041 0.9846411174563153 0.9005520072613836 0.9400062910495043 1.0592031892347056 1.0490875331186325 1.0809569666179994 1.132385648552799 1.0 22.376281199874857 2.7015486087190363 6.198082145221381 1.0695412519394132 0.9550399954634928 0.3635685741654726 0.06708024260337242 0.1945060019423377 22.399448323893626 0.020492783122434202 0.019583790865134842 502.97755882138324 -2.7015486087190363 -0.11450125647592035 SQGKDDDSFDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQGKDDDSFDR 11 1 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C190;Q9BV36-3;Q9BV36 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 105.03 0.0022989 343720000.0 226940.0 224590.0 227000.0 212090.0 192970.0 261850.0 243440.0 225900.0 318950.0 228160.0 False True 225718.1802554043 232065.34238247803 258959.62688062957 238940.57225392218 217543.58567720035 243748.92582859832 231663.87716889044 242757.8050969571 240349.04621103592 213598.63346239645 1.0567398142794835 1.086455182885487 1.2123655600363137 1.1186427945756832 1.0184689955682624 1.1411539572022111 1.0845756520707064 1.13651384918478 1.1252368159618813 1.0 17.704542891577773 -0.9186161992349375 4.421236411205088 0.9999984408459845 1.1107136791878842 0.2995381945368366 0.04989297286646801 3138262.9969942197 709843.2477907399 55.309820081040854 0.011586030969013561 0.12061013422040301 0.9186161992349375 0.11071523834189967 SQGKDDDSFDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQGKDDDSFDRK 12 2 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C190;Q9BV36-3;Q9BV36 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 ; 106.32 0.001088 739270000.0 783820.0 630800.0 649850.0 604160.0 577420.0 860380.0 866890.0 781500.0 1335750.0 774470.0 False True 779600.0002105893 651795.796673348 741343.2314025424 680646.5940540798 650951.0143635229 800903.9557166676 824955.2188586078 839819.4983765907 1006572.3106329873 725042.6615428748 1.0752470738088953 0.8989757861783485 1.022482221701245 0.9387676479694022 0.8978106377606988 1.1046301110232075 1.1378023151122187 1.1583035632544343 1.388293908790172 1.0 19.467706360303108 2.4706740588051557 2.6326683514499236 1.1822395133958021 0.9648767426789925 0.4704491184880254 0.10229521115539586 0.22874293610626034 3.2224020343884905 0.036862041434926614 0.031137296294761075 295.57932893526635 -2.4706740588051557 -0.21736277071680965 SQGQLNEKPLPEGWEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQGQLNEKPLPEGWEMR 17 1 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UJW8;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 ; 180.62 7.7467e-10 883110000.0 438570.0 494200.0 454880.0 456680.0 491710.0 554430.0 513340.0 503380.0 688740.0 557360.0 False True 436208.7878497082 510649.1482497916 518923.1501121614 514495.6411755453 554326.3539064944 516103.55908783624 488507.78305076476 540944.7717118466 519009.25564316893 521788.8076200965 0.8359872451831177 0.9786510189417181 0.9945080126938608 0.9860227618184919 1.0623576930191416 0.9891043110752203 0.9362174426064674 1.0367121023141936 0.994673032582655 1.0 18.993106473087845 4.776732027686065 2.66225132658058 1.0010589453278194 0.793419876709435 0.7110647540011596 0.031149741566816293 0.29354152214001716 2.5211635792673635 0.007711701641980374 0.14070781153882042 59804.247161073596 -4.776732027686065 -0.20763906861838433 SQGRLS(ph)VGS(ph)NRDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQGRLSVGSNRDR 13 2 H3BLT5;H0Y781;Q2LD37-4;Q2LD37 H3BLT5 KIAA1109 Uncharacterized protein KIAA1109 2 S(0.456)QGRLS(0.611)VGS(0.933)NRDR;S(0.331)QGRLS(0.695)VGS(0.973)NRDR 65.225 0.031732 1386260000.0 11261.0 17225.0 10440.0 40002.0 39392.0 0.0 22902.0 17563.0 20569.0 27938.0 True False 11200.372027214718 17798.323712267626 11909.861253893263 45066.24909850252 44408.33770532352 0.0 21794.14276586398 18873.64024310693 15500.045560479066 26154.972921074823 0.4282310695183257 0.6804948246735257 0.4553574301083174 1.7230470562708788 1.6978927043560705 0.0 0.8332695595453273 0.7216080972463621 0.5926232692823641 1.0 14.674797655906353 2.7315835937540887 24.9953639447409 0.6386904659602022 0.9896649205420663 0.1267707958205122 0.48177209233805524 1375.0028135508776 4925972.288062561 0.16426477658903493 0.15794464630254101 538.9935818074628 -2.7315835937540887 0.35097445458186416 SQHKEELGAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQHKEELGAVR 11 1 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6;Q4V328-2;Q4V328-3 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 0 101.6 0.0019024 93838000.0 72029.0 71560.0 63492.0 73182.0 65638.0 80606.0 83416.0 61631.0 104180.0 84897.0 False True 71641.20386717428 73941.83134106657 72431.12171764279 82446.83369648052 73996.61023309361 75033.89694611424 79380.84939993487 66230.21817587675 78506.23494047885 79478.80077602156 0.9013875796775754 0.9303340088062141 0.9113263034977117 1.0373437053840702 0.9310232352602142 0.9440743470396156 0.9987675785853549 0.8333067123460947 0.9877632044514174 1.0 16.27828248405023 3.7303288890938338 0.004447510005905347 1.8718684333526887 3.9710360816926126e-08 0.06151596470660703 0.05491263093954955 109411.76271281688 109.30709642602277 22493.079492584042 23516.19726082071 5374.386419631064 -3.7303288890938338 -1.871868393642328 SQHSGNAQVTQTK ddPTM_BT-474_Trastuzumab_2h_R1 4 SQHSGNAQVTQTK 13 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ;;; 214.48 3.075400000000001e-11 382708000.0 562050.0 684630.0 696740.0 710610.0 714430.0 768100.0 780340.0 609470.0 810410.0 790080.0 False True 559023.9852496255 707417.4956824247 794834.935827356 800573.1531395151 805408.42574163 715003.0549129144 742591.9730117148 654951.746225951 610695.3144376405 739656.4179784815 0.7557887306345106 0.9564136516463044 1.0746002015363838 1.0823581512718055 1.0888953386531168 0.966669169000188 1.0039688089792504 0.8854810562125146 0.8256472864883695 1.0 19.49649574627667 1.7317142234175202 6.169773282921697 0.8922420772793391 0.9983733585209157 0.1285536845937385 0.09943411586376517 0.2522710740913008 25.424687585299303 0.051608283886954376 0.026760120214041564 53.915572786993756 -1.7317142234175202 0.10613128124157656 SQIDVALS(ph)QDSTYQGER ddPTM_BT-474_Trastuzumab_2h_R1 2 SQIDVALSQDSTYQGER 17 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 SQIDVALS(0.998)QDS(0.002)TYQGER;SQIDVALS(1)QDSTYQGER 262.17 2.6246e-27 542580000.0 416190.0 386920.0 380780.0 373670.0 356510.0 462370.0 368610.0 363020.0 574830.0 395060.0 True False 413949.2792830557 399798.3983019205 434390.5142009083 420976.5836867521 401909.4352996771 430407.45020190655 350778.926073056 390110.39577820874 433170.84882737015 369846.9325721175 1.1192448627442342 1.0809834098704136 1.1745143083380996 1.1382454378059894 1.086691276589965 1.1637448152094116 0.9484435186025415 1.0547887826598104 1.171216551168516 1.0 18.49656878488146 2.2710363465862375 24.997968793140277 1.0453240743720271 1.125941215943439 0.3242941642769427 0.05909747061696331 235.1152543168484 180977.46000054802 0.020352216470489203 0.017026545379549386 186.65358967547266 -2.2710363465862375 0.08061714157141187 SQIHDIVLVGGSTR ddPTM_BT-474_Trastuzumab_2h_R1 8 SQIHDIVLVGGSTR 14 0 P11142;E9PKE3;E9PNE6;P11142-2;A8K7Q2;E9PN89 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;;;;; 166.62 3.7771e-06 34075940000.0 13499230.0 16159970.0 16029960.0 15866970.0 14877110.0 15158680.0 15371950.0 14300820.0 18779550.0 16272540.0 False True 13426551.645585438 16697844.832541846 18286839.03308995 17875726.775122903 16771621.774960559 14110796.131294485 14628350.051948423 15368019.806492537 14151581.535577534 15234012.565577582 0.881353588740222 1.0960897373993181 1.2003954279524796 1.1734089556624416 1.1009326467839027 0.9262691671384669 0.9602427455654264 1.0087965820126574 0.9289464266003112 1.0 23.860792655019523 2.7508367243100844 23.686163756728465 0.9686177984271223 1.101468641201049 0.3580364015119498 0.08335365664936555 420.8045922677517 811921.281731352 0.02658354554515706 0.027980778972785558 563.4257925999397 -2.7508367243100844 0.13285084277392678 SQIYGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQIYGSR 7 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 93.166 0.035210000000000005 381260000.0 277170.0 375590.0 341680.0 306650.0 310220.0 332710.0 344590.0 299120.0 429420.0 380440.0 False True 275677.7475164821 388091.2861010507 389785.5740642007 345471.85855846707 349724.67818200315 309710.54081509635 327920.865238366 321441.8533005835 323595.1949331968 356159.99348892964 0.7740278317504261 1.0896543497188533 1.0944114476358677 0.9699906358775392 0.9819313920019865 0.8695826215100235 0.9207122395361304 0.9025209433315388 0.9085669385920375 1.0 18.44216594585497 2.8841522662967 5.840132592523037 0.9135989073857241 0.9952270926093602 0.09910693052125907 0.0882897510053265 0.43019721856915016 19.1508601176043 0.02652597108024685 0.028274517374347937 765.8650768164099 -2.8841522662967 0.08162818522363602 SQKDEESSEGTHHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQKDEESSEGTHHAK 15 1 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 126.71 5.3333e-05 50717000.0 60278.0 61140.0 60476.0 58209.0 65102.0 77765.0 75432.0 44492.0 101490.0 76704.0 False True 59953.46994551542 63175.0079400895 68990.49513318478 65578.25343169682 73392.3538102146 72389.28858911955 71783.06598177679 47812.21896579821 76479.1493963256 71808.6850504017 0.8349055536030879 0.879768344118092 0.9607541912898299 0.9132356815288873 1.022054000274498 1.008085422234237 0.9996432316145751 0.6658278024759728 1.0650403825476786 1.0 16.131870723895656 4.4519827054514 4.0928174532569574 0.9335891003416845 0.8420147871244861 0.09993549878257191 0.1060248980962217 0.5597367361231335 20.765058268256695 0.028203346694668268 0.09979671573852192 28312.79245871548 -4.4519827054514 -0.09157431321719844 SQKPVMVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQKPVMVK 8 1 P46779 P46779 RPL28 60S ribosomal protein L28 0 ; 71.34899999999998 0.044663 468430000.0 972320.0 931430.0 893840.0 787930.0 795480.0 1038000.0 999940.0 950580.0 1387150.0 1067770.0 False True 967085.1371549069 962432.0844886758 1019684.9026034441 887681.8572117178 896779.6628206429 966245.5031891747 951569.0820582489 1021517.1065474334 1045305.4693576992 999624.0044361114 0.9674488936472071 0.9627940907957532 1.0200684438131806 0.8880157471933257 0.8971169748234656 0.9666089438640826 0.9519270023882926 1.021901336916846 1.0456986474102896 1.0 19.931026020384365 1.722422506786048 4.244096463497145 1.0266676532324062 0.9494945034681093 0.44749360184042475 0.03657665650893493 0.1718073962775106 7.108393319395927 0.020834844700218506 0.010262348213501034 52.774303070016394 -1.722422506786048 -0.0771731497642969 SQLDDHPES(ph)DDEENFIDANDDEDMEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLDDHPESDDEENFIDANDDEDMEK 26 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 SQLDDHPES(1)DDEENFIDANDDEDMEK;SQLDDHPES(1)DDEENFIDANDDEDMEK 390.98 3.389599999999998e-145 2018650000.0 1808880.0 1368920.0 1207660.0 1147110.0 1309070.0 1625900.0 1576910.0 1521000.0 2253730.0 1668590.0 True False 1799141.1910654614 1414483.6746703854 1377688.0308311065 1292334.0083841623 1475772.3050342156 1513505.359956915 1500628.8389188098 1634504.7434815024 1698328.4399347785 1562099.1576482297 1.1517458301264965 0.9055018484229373 0.8819465935217853 0.827306001707213 0.9447366371133693 0.9688919890562686 0.9606489009174266 1.0463514658968773 1.0872091132112538 1.0 20.57505460392246 1.8573211940731262 2.166462771677552 1.0530308956490273 0.9357713376405106 0.2152757103541223 0.08212536590701244 0.4280046513905777 3.754062658183423 0.051352385101457315 0.024194891857065658 71.99812625020301 -1.8573211940731262 -0.11725955800851673 SQLDIIIHSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLDIIIHSLK 11 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 128.67 0.00026089 4739800000.0 3860300.0 3916900.0 3786100.0 3593700.0 3279300.0 4454100.0 4145300.0 3713200.0 4903300.0 4351800.0 False True 3839516.5737196524 4047271.64868395 4319149.970628859 4048662.0515296413 3696899.4170660856 4146198.5508236 3944776.002416207 3990297.8392475503 3694947.415853807 4074064.3982365746 0.9424290336160508 0.9934235822182336 1.0601575106417973 0.9937648637272576 0.9074229211168724 1.017705697685645 0.968265500202616 0.9794390685072917 0.9069437924086655 1.0 21.958037354311887 3.457265275278491 24.99710062197213 0.9649675131179294 1.0029480527112613 0.13274500249860433 0.042347627328541144 445.97753516054763 561448.8703778242 0.011544412147510834 0.015633171711036547 2865.927998369521 -3.457265275278491 0.03798053959333192 SQLDIIIHSLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLDIIIHSLKK 12 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 173.25 2.1792e-05 1455830000.0 2826800.0 3051200.0 2867200.0 2717900.0 2659300.0 3435900.0 3530200.0 3254000.0 4611600.0 3491600.0 False True 2811580.8228870034 3152757.34751065 3270876.8378508403 3061985.861327432 2997946.092094001 3198384.320238616 3359430.739326388 3496830.003477198 3475132.972274065 3268763.0986908437 0.8601360019063651 0.9645108110689775 1.0006466480121619 0.9367414428270354 0.9171500049344945 0.9784692936357441 1.0277375991768438 1.0697716224457186 1.0631339339537555 1.0 21.64031339190852 2.2977276433719283 2.5858678088595046 1.051231503718876 0.9413304180670398 0.6200469766635666 0.03823337473011282 0.1802911654855848 2.474202924737557 0.01591784505634238 0.011843626858115321 198.4849779418146 -2.2977276433719283 -0.1099010856518362 SQLEEKENK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLEEKENK 9 1 P04080;A0A1W2PS52 P04080 CSTB Cystatin-B 0 ; 124.1 0.00049161 233590000.0 275560.0 248250.0 205830.0 206136.0 197772.0 237970.0 242900.0 230020.0 403050.0 258120.0 False True 274076.4155775943 256512.85117970593 234809.0748935678 232232.79646440002 222957.0919135168 221519.69402112477 231149.99903189088 247185.26041789318 303723.72809330025 241646.56061234997 1.1342036687096424 1.0615208034812649 0.9717046015409634 0.9610432520781806 0.9226578327807659 0.9167094845454359 0.9565623381774603 1.0229206647572708 1.2568924106498442 1.0 17.882538935278102 -1.0956344579706425 5.530718816790983 0.9999998787162706 1.0121785087152368 0.0 0.10089573107680037 1.5365674863429554e-07 2.4965628489177595e-08 0.09910328164989515 0.023358634983888 0.08023531131537275 1.0956344579706425 0.01217862999896624 SQLIDELADKFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLIDELADKFNR 13 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 0 ; 133.48 9.7293e-05 1193800000.0 544090.0 544350.0 510920.0 453030.0 504570.0 556460.0 616830.0 564770.0 796530.0 611650.0 False True 541160.6798940818 562468.3606834766 582853.095003749 510383.5515497876 568823.9986793027 517993.22996594163 586991.5763805719 606916.0052439506 600235.8544551695 572613.9733400895 0.9450706847712099 0.9822819331539657 1.0178813688459856 0.8913222088743165 0.9933812745807098 0.9046115779265007 1.025108718455851 1.0599042871828213 1.0482382240062358 1.0 19.127203350890877 2.0757233042480063 7.755310563153883 1.042660147460224 0.9587163162784973 0.48751336098473186 0.03881818361262983 0.18425378616779722 16.295880144372596 0.01397002991174484 0.010293476773066426 119.04832909841922 -2.0757233042480063 -0.08394383118172666 SQLLGSAHEVQR ddPTM_BT-474_Trastuzumab_2h_R1 3 SQLLGSAHEVQR 12 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 ;; 180.84 1.8923e-05 751660000.0 788370.0 928130.0 998760.0 958950.0 901890.0 1032900.0 968380.0 862050.0 1136620.0 1050620.0 False True 784125.503516141 959022.2459835662 1139376.726622457 1080352.9716766416 1016740.3455791582 961498.0541850652 921535.7598291574 926380.5484012025 856515.2309276928 983568.5321189648 0.7972250818423898 0.9750436443076143 1.1584111217627353 1.0984013176480625 1.033725980830974 0.9775608132904051 0.936930909983297 0.9418566354552249 0.8708241499780875 1.0 19.907666053126256 2.4523716367484276 2.9041680203461184 0.933399141219651 1.0229177943114514 0.12149712736861307 0.09268806684018405 0.5246531149063 9.08414111949925 0.03661454587491793 0.0308395325398999 283.38159263472073 -2.4523716367484276 0.0895186530918004 SQLPTLEQDGGTQNPVSS(ph)PGMSQELR ddPTM_BT-474_Trastuzumab_2h_R1 4 SQLPTLEQDGGTQNPVSSPGMSQELR 26 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8;P46937-4;H0YCI3 P46937-6 YAP1 Transcriptional coactivator YAP1 1 SQLPTLEQDGGTQNPVS(0.193)S(0.807)PGMSQELR;SQLPTLEQDGGTQNPVS(0.204)S(0.796)PGMSQELR;SQLPTLEQDGGTQNPVS(0.037)S(0.963)PGMSQELR;SQLPTLEQDGGTQNPVS(0.137)S(0.863)PGMSQELR 261.58 5.0421e-53 1327810000.0 350829.0 411085.0 409340.0 397555.0 420699.0 457499.0 412303.0 342262.0 374244.0 403243.0 True False 348940.175644766 424767.71571887005 466971.5139529374 447885.4222377679 474272.5239716669 425873.17096680566 392358.32873958634 367803.32841122063 282016.58081267576 377507.68650629855 0.9243260153828526 1.125189581303487 1.236985445977525 1.186427292071297 1.2563254760741245 1.1281178799513005 1.0393386486265361 0.9742936145621607 0.7470485791233563 1.0 18.526146494163594 1.8073039572185685 1.8606856335862123 0.8782408956284631 1.1524393943468736 0.5085704064306016 0.10455009710109606 0.2581965518602883 1.7273989840852857 0.07201153741756894 0.031102996036835355 64.16585081456076 -1.8073039572185685 0.2741984987184105 SQLQDLVEFPYVNLHNEVVGIIESR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQLQDLVEFPYVNLHNEVVGIIESR 25 0 Q12769;G3V198;E9PR16 Q12769 NUP160 Nuclear pore complex protein Nup160 0 ; 243.88 9.861399999999996e-39 205790000.0 299570.0 369850.0 343880.0 342900.0 349710.0 377220.0 375020.0 318850.0 398530.0 371820.0 False True 297957.14840535563 382160.23367095395 392295.31494145765 386311.10484167136 394243.4956064349 351143.669280366 356878.8498844774 342644.20608749357 300317.6215284027 348090.1292688826 0.8559770109861354 1.097877249417072 1.1269935052896276 1.1098019517332103 1.1325902760715776 1.0087722683142348 1.0252484051589004 0.9843548474275111 0.8627582234497148 1.0 18.40910137882665 1.8255854684403738 1.5857204407365082 0.9345616342102782 1.0676109643370209 0.25219676165569405 0.082811060263353 0.4818858074363931 2.3035150337415935 0.06002526546083683 0.025304340744082273 66.92455135042101 -1.8255854684403738 0.1330493301267427 SQNPHGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQNPHGLK 8 0 A0A590UJ56;A0A590UJR3;A0A590UJ21;A0A0C4DGX4;Q13616;A0A590UJC4;A0A590UK34;A0A590UJ50;A0A590UJM8;A0A590UJ59;A0A590UJ97 A0A590UJ56 CUL1 Cullin-1 0 63.816 0.070918 70159000.0 114260.0 125640.0 130330.0 124920.0 110850.0 113030.0 133920.0 121260.0 161760.0 141350.0 False True 113644.8368554795 129821.85144901615 148679.33115133244 140734.8591916639 124966.09044057441 105216.50214400033 127441.77797591918 130309.03694580363 121896.41547294919 132328.9219841765 0.8588057331039757 0.9810542510467958 1.1235588480733718 1.0635230536261193 0.9443596197021652 0.7951134231757877 0.9630682096175338 0.9847358762688749 0.9211623101375012 1.0 17.01376888785242 3.1041386291078967 7.991697100478824 0.9320581648184834 1.0129198088862528 0.15637029561060833 0.0817349237459807 0.4488133628386607 31.009826868984423 0.025167400969206843 0.030137800907875736 1270.9797439565239 -3.1041386291078967 0.08086164406776941 SQPERDWVLNEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQPERDWVLNEFR 13 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;A0A0U1RQJ0 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ; 180.97 1.1355e-05 685520000.0 221820.0 376900.0 357220.0 458390.0 358770.0 315290.0 391200.0 303270.0 495510.0 396550.0 False True 220625.74576651884 389444.88865913835 407513.47098809865 516422.1270002144 404457.2329036076 293494.74441282725 372276.1614708749 325901.54737385624 373398.1999938248 371241.83949646464 0.5942911662806257 1.049032860055223 1.0977035119232013 1.391066609573602 1.0894710398272855 0.7905756118731392 1.0027861136983192 0.8778685824202739 1.0058085061217372 1.0 18.50199978789937 2.782585046080719 24.49633874843255 0.9294424681977296 1.0668055197743307 0.06816346035438547 0.19191995083446636 883.7201395426649 491722.9323932433 0.06036051610060993 0.06402157712672392 606.156890086213 -2.782585046080719 0.13736305157660111 SQPFVDHVFTFTILDNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQPFVDHVFTFTILDNR 17 0 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 ; 127.22 4.1002e-05 957930000.0 436740.0 568120.0 557850.0 572810.0 598270.0 689670.0 599620.0 490700.0 660180.0 558650.0 False True 434388.6403663756 587029.5307642082 636390.4310808768 645327.6872684682 674456.1382758918 641994.7362085525 570614.0898291566 527318.5257241112 497487.4849587757 522996.4787156719 0.8305766062385515 1.122434958273109 1.2168159002593433 1.2339044592675008 1.289599769260705 1.227531660987672 1.0910476705893313 1.0082640078553742 0.951225304958957 1.0 18.9964417074166 1.8261241524245844 2.6920088150394283 0.9798607762786545 1.164257526585499 0.2759819472735674 0.11955836051987727 0.34987633931588835 4.689116645030727 0.07212139512302763 0.03531653148613088 67.00761377243965 -1.8261241524245844 0.18439675030684455 SQPPGEDS(ph)DT(ph)DVDDDSRPPGRPAEVHLER ddPTM_BT-474_Trastuzumab_2h_R1 3 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 SQPPGEDS(1)DT(1)DVDDDSRPPGRPAEVHLER;SQPPGEDS(1)DT(1)DVDDDSRPPGRPAEVHLER;SQPPGEDS(1)DT(1)DVDDDSRPPGRPAEVHLER 227.37 1.6803999999999999e-34 3762500000.0 225586.0 250441.0 241605.0 202561.0 207341.0 256951.0 266013.0 256404.0 259087.0 238506.0 True False 224371.4700409607 258776.77729021863 275620.8839316938 228205.20183095254 233744.64734360983 239188.5821675928 253144.9349216564 275538.16847313073 195238.48043793248 223284.3428847401 1.004868801556685 1.1589562167545255 1.2343941378548426 1.022038531151074 1.0468474606133462 1.0712286364434542 1.133733479253986 1.234023688868163 0.8743939584636037 1.0 17.768522564672462 1.2282531485776373 24.999479573696 0.9371969408239468 1.118855429021864 0.42725720536215284 0.08133313073232903 220.38589046031603 534500.497822882 0.07734965037010055 0.020201102385300547 16.914265703738113 -1.2282531485776373 0.1816584881979172 SQPPGEDS(ph)DTDVDDDSRPPGRPAEVHLER ddPTM_BT-474_Trastuzumab_2h_R1 3 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 SQPPGEDS(0.968)DT(0.032)DVDDDSRPPGRPAEVHLER;SQPPGEDS(1)DTDVDDDSRPPGRPAEVHLER;SQPPGEDS(1)DTDVDDDSRPPGRPAEVHLER 212.43 2.2751e-26 5601140000.0 88240.0 143189.0 68333.0 138295.0 104951.0 128870.0 147883.0 122536.0 99035.0 124829.0 True False 87764.92564438558 147954.95930542162 77953.69243891661 155803.13282029406 118315.88775668683 119961.52022734947 140729.3343220793 131680.25854520028 74629.1512510109 116862.30634851626 0.7510114115208877 1.2660622909852415 0.6670559128487228 1.333219732594061 1.012438411097549 1.026520218329343 1.2042320464084018 1.1267983891443383 0.6386075509107769 1.0 16.83445014157528 4.778544406644873 21.611522151814007 1.0437464921343855 0.7510066418363079 0.12642883205553934 0.21796705993423113 6741.955468533376 3643630.522076596 0.04815723068600236 10.513018713904007 60054.34113792532 -4.778544406644873 -0.2927398502980776 SQPPGEDSDT(ph)DVDDDSRPPGRPAEVHLER ddPTM_BT-474_Trastuzumab_2h_R1 1 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 SQPPGEDS(0.257)DT(0.743)DVDDDSRPPGRPAEVHLER 224.54 6.4092e-33 854100000.0 12156.0 18631.0 17372.0 21653.0 14360.0 20937.0 27262.0 26727.0 20095.0 30080.0 True False 12090.553446658572 19251.121572322674 19817.82659986915 24394.26757986789 16188.660881611633 19489.674470396658 25943.232909046535 28721.504456956063 15142.856509204463 28160.26864721635 0.42934794401734966 0.6836270567406555 0.7037513330622344 0.8662654424740109 0.5748759390195621 0.6920983146346232 0.9212707887859951 1.0199300587920772 0.5377383539521502 1.0 14.781373476811522 5.623358001991988 0.24168137983044488 0.9366279525559188 5.3533656898507154e-24 0.34031657196228526 0.15541576337871268 18.97600830076806 0.6737428117157777 0.23104898722678324 5.695670574497522 420105.14659178996 -5.623358001991988 -0.9366279525559188 SQPVYIQYSNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQPVYIQYSNHR 12 0 O95758-1;O95758-6;O95758;O95758-5;O95758-4;O95758-2;O95758-7;X6R242 O95758-1 PTBP3 Polypyrimidine tract-binding protein 3 0 ; 101.32 0.0027369 223297000.0 138347.0 260140.0 279870.0 261320.0 199802.0 260930.0 273600.0 204940.0 268870.0 270450.0 False True 137602.15512379684 268798.60264204926 319273.263326351 294403.08520625654 225245.60038076376 242892.5232631517 260364.92274650146 220233.66346423354 202610.59117341676 253189.64945610604 0.5434746460583575 1.0616492546969194 1.2610044052440679 1.1627769375196968 0.889631945320945 0.959330382521267 1.0283395206155115 0.8698367565077502 0.8002325198074186 1.0 17.949858902174746 1.7051045486018197 6.575678048381363 0.8768059670547026 1.0019537600442432 0.04791600722204559 0.18523007383845683 0.36383993334557274 36.436777310808985 0.09522943498438392 0.04895966840966454 50.711277187999585 -1.7051045486018197 0.1251477929895406 SQPWDLTPMLSSS(ph)EPWGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQPWDLTPMLSSSEPWGR 18 0 Q9H201 Q9H201 EPN3 Epsin-3 1 SQPWDLTPMLS(0.004)S(0.341)S(0.655)EPWGR 202.6 1.3372999999999999e-15 138620000.0 203080.0 132430.0 106630.0 165950.0 103550.0 132240.0 119700.0 130550.0 184300.0 161470.0 True False 201986.63984430922 136837.85249437456 121642.57715542526 186959.2529847631 116736.47871106451 123098.56005947643 113909.65370159449 140292.3039194676 138881.7344934753 151164.8463585778 1.3362011387566732 0.905222714081168 0.8047014903642158 1.2367905467999978 0.7722462035528694 0.8143332462858104 0.7535459231797164 0.9280749281263485 0.9187435957433796 1.0 17.205763151821618 4.737899607795853 6.859411856480049 0.8960235576867689 1.3431953675266597 0.48378725229985653 0.13383398323524204 0.09114046007195561 30.980898960041344 0.03139571098899582 0.19029871055647818 54688.952842670464 -4.737899607795853 0.4471718098398908 SQQQPTPVT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 SQQQPTPVTPK 11 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 SQQQPTPVT(1)PK;SQQQPT(0.001)PVT(0.999)PK;SQQQPTPVT(1)PK;SQQQPT(0.001)PVT(0.999)PK;SQQQPTPVT(1)PK;SQQQPT(0.001)PVT(0.999)PK 215.61 1.4187999999999998e-10 5365180000.0 6689630.0 3306981.0 3102395.0 3319336.0 2693255.0 4788220.0 4838690.0 4435630.0 7583560.0 5323660.0 True False 6653613.775367764 3417051.8634727667 3539185.249499249 3739563.5972608128 3036225.060076947 4457221.621657484 4604624.079109175 4766639.234272757 5714693.252497769 4983899.46098537 1.3350216687662222 0.6856181370073583 0.7101237248472734 0.7503288592666476 0.6092067233388077 0.8943241444875062 0.9238998730120435 0.9564075823733292 1.146630925690446 1.0 22.24884353483681 1.8501435199066418 1.527636241739011 1.0589641146427522 0.8044853859095942 0.18727767006546447 0.191837099689917 0.5974544589695912 2.6276146121606643 0.13768697393478846 0.05874300828025029 70.81797756214026 -1.8501435199066418 -0.254478728733158 SQRPEESEPLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQRPEESEPLEK 12 1 Q5TFE4;Q5TFE4-2 Q5TFE4 NT5DC1 5-nucleotidase domain-containing protein 1 0 ; 159.12 6.5298e-05 953600000.0 529790.0 587280.0 474940.0 445510.0 505090.0 675000.0 629170.0 642980.0 894760.0 734520.0 False True 526937.6695052031 606827.2597817433 541807.4237475165 501911.5203208311 569410.2175970211 628338.8387790866 598734.6434371943 690962.4325862832 674258.3871697338 687642.304745789 0.7662961773417999 0.882475170002925 0.7879204348077661 0.7299020389770524 0.8280616443566885 0.9137582642059435 0.8707065276598092 1.0048282774599238 0.9805365122481766 1.0 19.391298778661604 2.199607749139792 1.078452420824516 1.0018102900684476 0.7975717005709669 0.7680720848552659 0.045133356294639645 0.2459254526327269 0.5431369007439304 0.03278143882994645 0.01788074575992097 158.3462377466851 -2.199607749139792 -0.20423858949748064 SQS(ph)DRTEYNQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSDRTEYNQK 11 1 Q9NXL2-1;Q9NXL2 Q9NXL2-1 ARHGEF38 Rho guanine nucleotide exchange factor 38 1 S(0.015)QS(0.985)DRTEYNQK 140.93 2.3235e-05 206680000.0 139530.0 104950.0 104060.0 99357.0 103510.0 137160.0 122250.0 126790.0 169390.0 145180.0 True False 138778.7859832402 108443.19730638519 118710.74349426558 111935.58601269733 116691.38494816315 127678.45203991042 116336.30045964864 136251.71362657464 127646.10420971125 135914.48810514854 1.0210742645469535 0.7978781277717021 0.873422290362647 0.8235736128888611 0.8585647238570058 0.9394028099574903 0.8559521658180144 1.0024811594858467 0.9391648086181912 1.0 17.052339726004714 1.7406427783173704 9.604779209673472 0.9768740821351359 0.8770222297797854 0.35455860589702737 0.06099320675442823 0.10209893845402007 41.53292783925286 0.027532346492536296 0.014889761874773168 55.035482499791634 -1.7406427783173704 -0.09985185235535055 SQS(ph)FSHQQPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 S(0.004)QS(0.957)FS(0.038)HQQPSR 86.46700000000001 0.010251 0.0 31808.0 27082.0 22065.0 29747.0 20743.0 25325.0 24525.0 21999.0 34779.0 28991.0 True False 31636.74926220104 27983.407998585277 25171.56020758189 33512.967149971395 23384.498096606563 23574.342358637605 23338.6320554019 23640.67708865851 26208.181464723664 27140.769559556174 1.165654098082191 1.0310469619212552 0.927444601463744 1.2347832317883407 0.861600406918932 0.8685952071811154 0.8599104754266058 0.8710393062651647 0.9656388484937359 1.0 14.728174007602279 3.207212565926796 24.999868158548946 0.8916550165716197 1.0739485902395198 0.5086536739399576 0.08812589514834193 154.5315409192158 123237.46998316461 0.02458624583483856 0.02938880980747445 1611.4341604679505 -3.207212565926796 0.1822935736679001 SQS(ph)FSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSFSK 6 0 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75;REV__E7ESW5 COBLL1 Cordon-bleu protein-like 1 1 SQS(0.998)FS(0.001)K 83.78299999999999 0.059366 264710000.0 501110.0 407360.0 353970.0 375800.0 318410.0 313050.0 373650.0 383140.0 653170.0 485150.0 True False 498412.0794385547 420918.7313456801 403805.8992376057 423376.2414683584 358957.62613606936 291409.59034043475 355575.12201838597 411731.8523454984 492205.005529588 454187.3116421881 1.0973712093287342 0.9267514097295672 0.8890734921184384 0.9321621952352053 0.7903294894747273 0.6416066298435241 0.7828821125203747 0.9065243387289154 1.083704878830588 1.0 18.79292787734074 5.15966690523267 1.1505374552344594 0.8583918901631027 1.4621019493568246 0.23261737667555782 0.11650262657625755 5.38177728973359 3.089608409651815 0.035163648231441275 4.932394963451413 144433.1573766043 -5.15966690523267 0.6037100591937219 SQS(ph)FTHSPSGDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 S(0.022)QS(0.489)FT(0.489)HS(0.001)PSGDPK 147.7 4.5005e-05 210970000.0 218310.0 163500.0 147710.0 150670.0 136280.0 201760.0 174830.0 180170.0 271950.0 187110.0 True False 217134.6432165213 168941.9986621627 168506.28408166431 169744.80655145686 153634.45020515574 187812.80609195368 166372.80498454292 193615.20028472217 204931.56644330194 175168.47960706972 1.2395759996523819 0.9644543301461884 0.9619669272671102 0.9690373915000061 0.8770667562439419 1.0721837999236346 0.9497873439202255 1.1053084477243356 1.1699112015072317 1.0 17.41838366943457 1.660480419308938 7.002662678468597 1.1037351765568075 0.998197720649961 0.131391298362604 0.0996417638106747 0.21198365735099697 20.206174837201292 0.04891028115082222 0.024885181770629098 45.75941032386149 -1.660480419308938 -0.10553745590684649 SQS(ph)GEDESMNQPGPIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSGEDESMNQPGPIK 16 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 SQS(1)GEDESMNQPGPIK;SQS(1)GEDESMNQPGPIK 454.83 1.0319999999999993e-182 1194100000.0 1045290.0 935910.0 828740.0 796180.0 850730.0 998310.0 1012250.0 878880.0 1149050.0 976200.0 True False 1039662.2747826367 967061.1985804588 945419.3884627876 896976.3063658262 959065.4228282368 929299.1794689636 963283.6003294833 944466.4884622123 865882.0239811597 913898.0802331321 1.1376129321963588 1.0581718240766682 1.0344910542121004 0.9814839594990841 1.049422734954846 1.016852097152784 1.0540383234898065 1.0334483777679917 0.947460162910372 1.0 19.80167375641493 4.733096203023262 1.7038242739468261 1.0181887409358903 1.1785112018513324 0.6048042320205564 0.030529152133359088 0.6494707173772446 1.864907105936753 0.007903373645353295 0.16976334751033728 54087.41217576047 -4.733096203023262 0.1603224609154421 SQS(ph)GTLDGESAAWSASGEDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSGTLDGESAAWSASGEDSR 21 0 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;H3BQK4 P49815 TSC2 Tuberin 1 SQS(0.977)GT(0.023)LDGESAAWSASGEDSR 343.5 5.305699999999998e-81 191860000.0 53474.0 57245.0 51047.0 52367.0 52122.0 51751.0 55420.0 52795.0 65477.0 57956.0 True False 53186.1019255199 59150.36521966676 58233.97389152197 58996.656830690525 58759.427748702066 48173.575178750434 52739.12287504069 56734.830987577894 49341.07069684903 54257.19846137203 0.9802589045098838 1.0901846556227628 1.0732948906859092 1.0873516971705186 1.0829793910302126 0.8878743566726399 0.9720207524645395 1.0456645863860774 0.9093921561758668 1.0 15.727526936379867 2.7713474316507196 24.988188790904616 0.9731693211368667 1.066280004603692 0.4828462622734776 0.05105162958969453 610.1695180290506 465034.34305678116 0.01584812999597037 0.016808531514063536 590.6734245990709 -2.7713474316507196 0.09311068346682527 SQS(ph)IEQESQEK ddPTM_BT-474_Trastuzumab_2h_R1 6 SQSIEQESQEK 11 0 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 SQS(1)IEQESQEK;SQS(1)IEQESQEK;S(0.001)QS(0.999)IEQESQEK;SQS(1)IEQESQEK;SQS(1)IEQESQEK;SQS(1)IEQESQEK 302.37 6.4263e-36 5515910000.0 7858220.0 5466470.0 4932860.0 4974310.0 4825060.0 6745520.0 6852180.0 6868620.0 9301660.0 7103580.0 True False 7815912.216650317 5648418.149399107 5627363.810812253 5604057.135972506 5439502.790628758 6279218.0796460835 6520713.875530433 7381191.302545652 7009390.528858271 6650223.442719189 1.1752856552823574 0.8493576491152518 0.8461916895398777 0.8426870441635989 0.8179428612408572 0.9442115943518724 0.9805255314645787 1.1099162856891285 1.0540082734411438 1.0 22.66497138426692 2.116361851350988 2.561161962395589 1.0638554026789175 0.8969526210166974 0.2812654088425255 0.0999617663663354 0.31788926389556343 4.130244365615039 0.04691433429443178 0.02957084636824592 130.72596347658893 -2.116361851350988 -0.16690278166222017 SQS(ph)LPHSATVTLGGTSDPSTLSSSALSER ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7;F8WDP1 A0A0A0MRY0 TBC1D22A TBC1 domain family member 22A 1 S(0.229)QS(0.77)LPHS(0.001)ATVTLGGTSDPSTLSSSALSER;S(0.23)QS(0.762)LPHS(0.003)AT(0.004)VTLGGTSDPSTLSSSALSER 290.63 7.632399999999996e-81 1953370000.0 356820.0 338920.0 300670.0 372990.0 345250.0 359140.0 334330.0 326160.0 345120.0 396590.0 True False 354898.92076642904 350200.74731853366 343001.7225295106 420210.4957564738 389215.54104292585 334313.4971246244 318157.18063537264 350499.71540692094 260069.80037106946 371279.2866622182 0.9558812826779327 0.9432272682562511 0.9238374852879043 1.1317908400819896 1.048309332152498 0.9004367039435074 0.8569214391020555 0.94403250598194 0.7004694571277694 1.0 18.502145305214555 2.6103148924587165 5.535873656400697 0.8782780005626286 1.0000191456998788 0.30815024725572926 0.09054303527295621 0.3010189455320484 12.34104969913321 0.029792960635632942 0.027963602391406914 407.6757627803926 -2.6103148924587165 0.1217411451372502 SQS(ph)LPNSLDYTQTSDPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 SQSLPNSLDYTQTSDPGR 18 0 Q96TC7;H0YLG5;H0YNE5 Q96TC7 RMDN3 Regulator of microtubule dynamics protein 3 1 S(0.085)QS(0.915)LPNSLDYTQTSDPGR;S(0.002)QS(0.998)LPNSLDYTQTSDPGR;SQS(1)LPNSLDYTQTSDPGR;SQS(1)LPNSLDYTQTSDPGR;S(0.001)QS(0.999)LPNSLDYTQTSDPGR 345.82 3.187299999999999e-90 3441670000.0 828916.0 968580.0 972280.0 933740.0 1014870.0 1185700.0 990960.0 901563.0 1035810.0 1034740.0 True False 824453.208357226 1000818.5997810249 1109168.5727907417 1051951.388261481 1144107.6788942337 1103735.3498375756 943023.4789651798 968842.2091041517 780548.5046429004 968702.0073145174 0.8510906368851399 1.0331542540678145 1.145004928673197 1.0859391023435077 1.1810728895524687 1.1393961626005134 0.9734918187890155 1.000144731598134 0.8057674070551116 1.0 19.885693405621268 1.757590861526486 2.0170092527065884 0.9131604338440037 1.0765048653256728 0.2738899372619221 0.09999546758331335 0.386884486765757 3.15699036805569 0.06951890963714265 0.02941688632480061 57.22566676067533 -1.757590861526486 0.1633444314816691 SQS(ph)LPTTLLSPVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 S(0.006)QS(0.892)LPT(0.037)T(0.065)LLSPVR 77.726 0.026397000000000004 253850000.0 324130.0 352450.0 354980.0 289210.0 261070.0 277960.0 333550.0 243350.0 384680.0 322990.0 True False 322384.9200942281 364181.08518947614 404958.09845852765 325823.95634663035 294315.7170168765 258745.27944745953 317414.9122152618 261510.01270626183 289880.76844791084 302376.5016743487 1.0661705466829825 1.2043961193177943 1.3392512189808206 1.077543904841964 0.973341894582293 0.8557056451632646 1.0497340582275438 0.8648489920949645 0.95867491965399 1.0 18.205986503429962 3.395445698443842 3.2663000994808624 0.9402395154742582 1.2046689800014663 0.6510833685458102 0.08270848654272846 0.13653253938782656 2.917415872431024 0.023203486956092624 0.03311844867074599 2485.6827500554955 -3.395445698443842 0.26442946452720806 SQS(ph)LQDQPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSLQDQPTR 10 0 Q8N4C8;Q8N4C8-2;Q8N4C8-3 Q8N4C8 MINK1 Misshapen-like kinase 1 1 S(0.308)QS(0.692)LQDQPTR 121.45 0.00053994 204010000.0 138640.0 196420.0 180480.0 180480.0 223750.0 205760.0 169410.0 161610.0 159590.0 191430.0 True False 137893.57764435204 202957.72096160246 205890.015239718 203328.74949496862 252243.23622984698 191536.2955069409 161214.99109095344 173670.15883895184 120261.1828964391 179212.77350853162 0.7694405646692782 1.1324958427248515 1.148857925743314 1.1345661668769884 1.407507016891509 1.0687647524065722 0.8995731048338395 0.9690724351781994 0.6710525178648269 1.0 17.45131394453687 2.297779467212309 4.265891375265132 0.8906176951138304 1.1316244024975435 0.3077105034182025 0.16577540772512844 0.26195248029532525 9.62518456005077 0.06112482533578296 0.04910529277309103 198.50866432971748 -2.297779467212309 0.2410067073837131 SQS(ph)MDAMGLSNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSMDAMGLSNK 12 0 J3KPC5;P47736-3;P47736;P47736-4;F2Z357;X6R8W7;P47736-2;A0A0A0MQY8 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 SQS(1)MDAMGLSNK;SQS(1)MDAMGLSNK 227.73 1.2839000000000002e-11 495150000.0 1553950.0 1186000.0 1019690.0 1096770.0 1020780.0 1421090.0 1285020.0 1232370.0 1705710.0 1252300.0 True False 1545583.7058600767 1225475.2930478617 1163253.4886956334 1235620.9695456382 1150770.28236292 1322853.3931860332 1222858.673346891 1324335.7072480624 1285360.6258430022 1172377.1418520282 1.3183331973007308 1.045291015408193 0.9922178172614471 1.0539449511901113 0.981570043701999 1.128351403283328 1.043059122950074 1.1296157695091036 1.0963712784543818 1.0 20.161005314130758 4.74019440348266 24.964881762861534 1.057528717903961 1.3183332855589958 0.7138594970250104 0.050436002268741925 78.40918996514182 1198016.961973664 0.012409926732377098 0.07877403819922552 54978.69202122172 -4.74019440348266 0.2608045676550348 SQS(ph)MDIDGVSCEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SQSMDIDGVSCEK 13 0 O95155-2;O95155;O95155-4 O95155-2 UBE4B Ubiquitin conjugation factor E4 B 1 SQS(1)MDIDGVSCEK;SQS(1)MDIDGVSCEK;SQS(1)MDIDGVSCEK;SQS(1)MDIDGVSCEK 299.88 7.611399999999998e-41 2192050000.0 4951300.0 4344740.0 3428330.0 3908840.0 3642750.0 4376800.0 4324830.0 4230070.0 5762500.0 4697360.0 True False 4924642.750941139 4489352.0444492055 3911009.064421447 4403698.743217611 4106632.6202291613 4074242.117878978 4115621.450445008 4545739.303260222 4342409.0885439515 4397570.463187773 1.1198553365239985 1.0208709745596438 0.8893567703259448 1.001393560394572 0.9338412322453812 0.9264756874243657 0.9358852768584448 1.0336933407463909 0.9874563977756402 1.0 22.06827526380984 4.608263118923102 3.5829445344851587 0.9653089577790751 1.1204594149840468 0.5680761111659616 0.04153726934047944 0.18341106338052118 3.7994313518761014 0.010471919875250289 0.059295256327238706 40575.4288736783 -4.608263118923102 0.15515045720497167 SQS(ph)PAASDCSSSSSSASLPSSGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SQSPAASDCSSSSSSASLPSSGR 23 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 S(0.003)QS(0.997)PAASDCSSSSSSASLPSSGR;S(0.004)QS(0.996)PAASDCSSSSSSASLPSSGR;S(0.395)QS(0.605)PAASDCSSSSSSASLPSSGR;S(0.03)QS(0.969)PAAS(0.001)DCSSSSSSASLPSSGR 418.19 3.953999999999997e-158 3053810000.0 793917.0 829573.0 793307.0 827122.0 869229.0 910751.0 923039.0 887951.0 967995.0 910433.0 True False 789642.6390844717 857184.8358175324 904997.7300519443 931835.5603932712 979920.1608260738 847792.9270472474 878388.0772185966 954214.4125438157 729445.6027184555 852328.3864790939 0.9264535261419927 1.0056978617813026 1.061794660847122 1.0932823254222654 1.1496979056089545 0.994678741780991 1.0305747070646718 1.1195384639077968 0.8558269492017528 1.0 19.70104985590594 4.622600290743447 2.6734967229197895 1.049719639721871 0.9169830508377308 0.14508594333948888 0.07778147629645948 0.5879899254068401 6.4267792515368125 0.018694922503882213 0.15215906389599784 41937.283042011506 -4.622600290743447 -0.1327365888841403 SQS(ph)PHYFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSPHYFR 8 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 SQS(1)PHYFR;SQS(1)PHYFR 135.99 0.00052192 3191300000.0 1505640.0 1749190.0 1557300.0 1637910.0 1533990.0 1674230.0 1766330.0 1426510.0 1807690.0 1653620.0 True False 1497533.8015323302 1807410.731742318 1776554.3037057444 1845269.238061304 1729334.5338289298 1558494.4208134983 1680885.8698641376 1532963.419871006 1362209.0213049925 1548084.55586469 0.9673462575794999 1.1675142193591486 1.1475822150511936 1.1919692829895974 1.1170801538440525 1.0067243516572606 1.0857842767672794 0.9902323578280011 0.8799319237082138 1.0 20.562052842482935 1.9817176004507224 1.1070642785860487 0.9441704872187058 1.1218079241038996 0.46318784650388645 0.07053255321263525 0.42669273138030556 0.9635349226222102 0.05468788862244283 0.02514855447563612 95.87769850066802 -1.9817176004507224 0.17763743688519384 SQS(ph)PINCIRPSVLGPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSPINCIRPSVLGPLK 17 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 SQS(1)PINCIRPSVLGPLK;SQS(1)PINCIRPSVLGPLK 177.5 6.2046e-10 2084890000.0 2079250.0 1936240.0 1937290.0 1680180.0 1442530.0 1838640.0 1914330.0 1742820.0 3001700.0 2176450.0 True False 2068055.5490263933 2000686.5779182022 2210043.5927734543 1892890.6157272619 1626227.644954821 1711539.1444930101 1821726.5444492358 1872878.078260641 2261971.2557192883 2037547.0976474087 1.014973126959475 0.981909365544597 1.084658899578426 0.9290045947467079 0.7981300882970975 0.8399997950816382 0.8940782505359687 0.919182717505329 1.1101442800173817 1.0 20.95840197676951 3.6035802117849944 6.9622963487782705 0.912364066400242 1.02203146434956 0.21609035075012928 0.08431263294910396 0.3532675421246593 18.45997813464195 0.02312307832715949 0.03592396152192568 4014.026282586643 -3.6035802117849944 0.10966739794931801 SQS(ph)PINCIRPSVLGPLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSPINCIRPSVLGPLKR 18 2 Q96E09 Q96E09 FAM122A Protein FAM122A 1 S(0.001)QS(0.999)PINCIRPSVLGPLKR 98.21 0.00099545 366380000.0 284040.0 321780.0 244110.0 270530.0 285320.0 344850.0 290410.0 316050.0 410340.0 332900.0 True False 282510.76019981084 332490.25277988234 278478.56615784345 304779.07026193384 321653.81077586603 321011.33118958224 276361.75882606575 339635.2558693818 309217.2052742955 311654.036989971 0.9064883706573068 1.0668568775529188 0.8935503253782812 0.977940389303353 1.0320861359040148 1.0300246205375236 0.8867581549568024 1.0897829501894476 0.9921809717621148 1.0 18.24958587516151 3.4640182076883184 19.933466864974005 1.0077978238026792 0.9615862899339683 0.1047388749608571 0.06442621899378935 47.728180954691155 72604.81165858862 0.017153497631019754 0.02326542082370467 2910.839151717146 -3.4640182076883184 -0.04621153386871091 SQS(ph)SDTEQQSPTSGGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.025)QS(0.963)S(0.011)DTEQQSPTSGGGK;SQS(0.981)S(0.019)DTEQQSPTSGGGK;SQS(0.97)S(0.03)DTEQQSPTSGGGK 382.09 3.955899999999998e-106 477364000.0 810995.0 616686.0 575791.0 665343.0 686430.0 731011.0 620254.0 623141.0 974710.0 823002.0 True False 806628.6930300142 637212.0207154412 656857.3679349101 749575.3555808456 773842.7917106319 680477.9301847994 590249.9444196225 669642.9456658827 734505.7809448472 770477.3077525382 1.046920765756137 0.8270354159737315 0.8525330484436272 0.9728714240362729 1.0043680507189896 0.8831900996146601 0.7660834893909672 0.8691274083323924 0.9533126719687318 1.0 19.55539294126775 2.5053671014883707 24.513688940373072 0.8731690315220918 0.9325592133991543 0.03912285723693709 0.08449399548413095 1366.3607332792822 1185820.4424829609 0.027641307186160365 0.02600625513995276 320.1600222605333 -2.5053671014883707 0.059390181877062465 SQS(ph)SHS(ph)YDDSTLPLIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSSHSYDDSTLPLIDR 17 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;H0YC95 O60716-13 CTNND1 Catenin delta-1 2 S(0.008)QS(0.956)S(0.037)HS(0.887)Y(0.085)DDS(0.022)T(0.005)LPLIDR 148.69 5.156e-07 261460000.0 287790.0 368530.0 339120.0 379520.0 354020.0 388810.0 341200.0 295160.0 406570.0 371300.0 True False 286240.5706164751 380796.2982689108 386865.1483161187 427567.19308693754 399102.34855906357 361932.47986029176 324694.8524894238 317186.3379921106 306376.2712588835 347603.31611407653 0.823469044589139 1.0954909824391346 1.1129501083043674 1.2300434813648855 1.1481546062928987 1.0412227475456899 0.9340959577694747 0.9124951439991911 0.8813962843735843 1.0 18.407082319875986 2.3217886257444835 3.3698647272559334 0.9218416635380872 1.092881725284013 0.32472554929922204 0.10146553875566053 0.2661807327135382 6.035839670624074 0.0396527911541405 0.03140897493358137 209.79185630114523 -2.3217886257444835 0.1710400617459259 SQS(ph)SSQFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSSSQFR 8 0 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 1 S(0.003)QS(0.795)S(0.186)S(0.016)QFR;S(0.007)QS(0.844)S(0.132)S(0.017)QFR 87.94200000000002 0.015699 762400000.0 1384320.0 1619110.0 1576620.0 1614500.0 1618210.0 1364750.0 1545710.0 1353620.0 1547680.0 1487820.0 True False 1376866.9749324117 1673001.097577336 1798594.3917732965 1818895.5344615846 1824279.4516178817 1270408.0447759412 1470938.1021143845 1454633.9979430859 1166275.0018494925 1392866.0538132114 0.9885135553149569 1.2011213088273682 1.2912902765124714 1.3058653626327126 1.3097307143236074 0.912081991874222 1.0560513683906916 1.0443459325904125 0.8373202855052813 1.0 20.40962509589877 2.7372766269795332 24.999978059702386 0.9857966978488019 1.2271022579853252 0.5813810442313463 0.10525937448885372 90.80244997683512 1767959.2620418442 0.0345368932438073 0.034233928756851835 546.1055962026157 -2.7372766269795332 0.24130556013652338 SQS(ph)WDDRGER ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSWDDRGER 10 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 S(0.278)QS(0.722)WDDRGER 72.031 0.029799000000000006 220700000.0 164070.0 173280.0 149750.0 206710.0 160550.0 160150.0 148850.0 143910.0 209620.0 175600.0 True False 163186.66534989054 179047.52005002808 170833.49834966654 232879.46480554616 180995.09084559526 149079.20745254922 141649.55683778055 154649.2949601732 157961.95976409255 164393.05766127622 0.9926615373632662 1.0891428299785424 1.0391770843611932 1.4166015774545833 1.1009898679451946 0.9068461258243615 0.8616516953510437 0.940728867509846 0.9608797476689397 1.0 17.326789849556604 2.7917625781390707 5.463357086878729 0.9251898475663471 1.1387142832910928 0.4316043740018438 0.11096312621448633 0.19753078137189314 13.377941492682496 0.03547639887205562 0.03731706136269987 619.1025290760036 -2.7917625781390707 0.21352443572474566 SQS(ph)WEER ddPTM_BT-474_Trastuzumab_2h_R1 3 SQSWEER 7 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;E7ESB6 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 S(0.001)QS(0.999)WEER;S(0.03)QS(0.97)WEER;S(0.003)QS(0.997)WEER 97.284 0.012703 1226410000.0 1585820.0 1603970.0 1425070.0 1726140.0 1548220.0 1581420.0 1289010.0 1179230.0 1690350.0 1600060.0 True False 1577282.1213211666 1657357.1718296586 1625707.4690695105 1944669.1470148796 1745376.6399811136 1472100.157662258 1226655.6618036125 1267230.130608608 1273785.8920295474 1497942.8009197144 1.0529655206812565 1.106422201710283 1.0852934224666992 1.2982265716827652 1.1651824348095792 0.9827479105066033 0.8188935258745957 0.8459803203637334 0.8503568302123833 1.0 20.514551104733 2.5315019767232805 3.42093634692819 0.8634359953518689 1.1441624726870108 0.7208516572376709 0.07703627895423842 0.12412236047144264 2.9062066559009745 0.027789335610970793 0.02492402820904851 340.0180534177304 -2.5315019767232805 0.2807264773351419 SQS(ph)WEERGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSWEERGDR 10 1 Q6Y7W6;I1E4Y6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;E7ESB6 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 S(0.079)QS(0.921)WEERGDR;S(0.024)QS(0.976)WEERGDR 102.63 0.0017692999999999997 1481730000.0 778840.0 916300.0 888010.0 1028500.0 1002260.0 976440.0 887940.0 782520.0 1091710.0 1017590.0 True False 774646.8119772597 946798.4915849534 1013034.0892787128 1158707.994545519 1129891.8701395595 908941.0010925218 844986.9499397972 840915.6159560452 822672.6986645233 952646.5349973702 0.8131523954783483 0.9938612662749747 1.0633892551569604 1.2163042135546291 1.1860557180766722 0.954121983023883 0.8869889501483672 0.8827152412393612 0.8635655182084867 1.0 19.86158149780826 2.5028131809868306 11.334059672911708 0.8994142136446925 1.0616295456088696 0.29025328347921964 0.10843369549358206 1.1378122834272515 499.7658063015975 0.038183682508843034 0.035316308672600785 318.2828080631338 -2.5028131809868306 0.16221533196417703 SQSAS(ph)VES(ph)IPEVLEECTSPADHSDSASVHDMDYVNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 S(0.007)QS(0.036)AS(0.961)VES(0.996)IPEVLEECTSPADHSDSASVHDMDYVNPR;S(0.029)QS(0.152)AS(0.821)VES(0.998)IPEVLEECTSPADHSDSASVHDMDYVNPR 136.03 2.0936e-09 265178000.0 61861.0 64733.0 59310.0 66854.0 59432.0 71700.0 74347.0 57212.0 85444.0 72320.0 True False 61527.94724940322 66887.59877307508 67660.33246823857 75317.7095453049 67000.31291893747 66743.54776364526 70750.55157687934 61481.449956649434 64387.47109094141 67704.47568373293 0.9087722285424371 0.9879346689800285 0.9993480015161691 1.1124480144730102 0.9895994650621799 0.9858070251577392 1.0449907611333629 0.9080854601673154 0.9510076023882645 1.0 16.046963587549072 -0.6040678723580488 7.720870817716056 0.9999999998449113 0.988244981295584 0.004089108454654267 0.057363506023943696 0.0 0.0 0.05743072552815346 0.013536551823140229 0.24884683853743372 0.6040678723580488 -0.011755018549327256 SQSASVES(ph)IPEVLEECTSPADHSDSASVHDMDYVNPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 SQSASVES(1)IPEVLEECTSPADHSDSASVHDMDYVNPR;SQSAS(0.001)VES(0.999)IPEVLEECTSPADHSDSASVHDMDYVNPR;S(0.032)QS(0.027)AS(0.109)VES(0.662)IPEVLEECT(0.091)S(0.076)PADHS(0.003)DS(0.001)AS(0.001)VHDMDYVNPR 273.28 5.597699999999999e-76 476514000.0 160393.0 241241.0 217879.0 253603.0 259494.0 275034.0 225137.0 183929.0 248259.0 228446.0 True False 159529.4619093377 249270.56085173605 248554.46936178283 285709.11379749846 292539.0227585607 256021.54694039605 214246.26320314006 197654.71595253728 187078.89595016633 213866.38069753945 0.7459305262894604 1.1655434577361972 1.1621951451701098 1.335923453072143 1.3678588556295066 1.1971098314067161 1.0017762609736116 0.9241972268286079 0.8747466307700913 1.0 17.706350186425645 2.1158632775486494 3.7684169411865684 0.9318384909991902 1.1797128326163282 0.2982155075097258 0.160400248470782 0.2825217266465878 7.598982865290818 0.06848155719829059 0.047998730249877115 130.5759750560895 -2.1158632775486494 0.24787434161713795 SQSDLDDQHDYDS(ph)VAS(ph)DEDTDQEPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 SQSDLDDQHDYDS(1)VAS(1)DEDTDQEPLR;SQSDLDDQHDYDS(1)VAS(1)DEDTDQEPLR 234.72 3.5725e-45 2356700000.0 1275420.0 1440970.0 1210110.0 1332870.0 1372170.0 1462340.0 1396800.0 1234190.0 1376300.0 1420040.0 True False 1268553.280432484 1488931.8153652407 1380482.9695353229 1501611.2053377593 1546907.716011216 1361251.8777780903 1329231.447705826 1326291.5248898335 1037129.3064751484 1329411.8314425906 0.9542214462285424 1.1199929022367354 1.03841634088461 1.1295304959850623 1.1636030907988935 1.023950476129695 0.9998643131251744 0.9976528668701774 0.7801414745570029 1.0 20.342356668025207 1.784676082904238 1.5666693276926267 0.9017619520087419 1.0788221514688987 0.4260321443729451 0.07804836463124817 0.3334117488977768 1.5729509539501858 0.0564314320942703 0.022980034391124077 60.908244566808655 -1.784676082904238 0.17706019946015683 SQSDLDDQHDYDSVAS(ph)DEDTDQEPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 SQSDLDDQHDYDSVAS(1)DEDTDQEPLR 229.31 5.5413e-35 1150400000.0 579840.0 627380.0 571850.0 575780.0 608620.0 681390.0 713290.0 599630.0 676460.0 739070.0 True False 576718.2058662798 648261.9640407809 652361.5093906963 648673.6889639467 686124.1494266341 634287.1131195297 678785.4376675882 644377.4354594437 509755.4970995993 691901.9198503385 0.8335259511796507 0.9369275405118155 0.9428525787756233 0.9375226030652692 0.9916494372136528 0.9167298065262326 0.9810428591012041 0.9313132641673049 0.7367453138587355 1.0 19.400208018405518 -0.7943678274795261 5.55472778498829 1.000000015904283 0.9208460410650889 0.10883476079325083 0.07162553305864595 1.3882923180193904e-08 2.8563412102380964e-09 0.06654764351865419 0.015685426729106854 0.16055808237684055 0.7943678274795261 -0.07915397483919406 SQSFNTDTTTSGISSMSS(ph)SPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSFNTDTTTSGISSMSSSPSR 22 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 SQSFNTDTTTSGIS(0.002)S(0.009)MS(0.051)S(0.313)S(0.313)PS(0.313)R 72.086 0.0051417 0.0 25645.0 31230.0 32656.0 27120.0 29462.0 33107.0 34682.0 29787.0 29652.0 33822.0 True False 25506.930169427364 32269.471671066352 37253.68094895961 30553.38921932374 33213.811065044734 30818.39101549518 33004.29916189393 32009.85719532122 22344.661916443438 31663.451003528997 0.8055638081453765 1.0191394383217993 1.1765515055452282 0.9649418572826589 1.0489637109152425 0.9733111849387601 1.0423468736309094 1.0109402538514711 0.7056925637686509 1.0 14.950530883108891 1.3332718588584118 15.39582519785895 0.8528814907386066 1.0121897025486433 0.2358992054361213 0.10912007390290349 1.2281299083025035 193.6556830491785 0.06835379214276593 0.02497936964887735 21.541297509326455 -1.3332718588584118 0.15930821181003663 SQSFNTDTTTSGISSMSSS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQSFNTDTTTSGISSMSSSPSR 22 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 SQSFNTDTTTSGISSMSS(0.008)S(0.724)PS(0.268)R;SQSFNTDTTTSGISSMSS(0.062)S(0.725)PS(0.212)R 485.82 2.825799999999997e-250 473980000.0 633310.0 815950.0 756420.0 696080.0 736580.0 813920.0 914410.0 730320.0 747410.0 848720.0 True False 629900.3293273557 843108.4024978089 862917.3610794963 784203.6566293098 830379.0969482936 757655.626161592 870176.4949145787 784820.1868898165 563220.8202808913 794553.9629742508 0.7927722454110634 1.0611090521049125 1.0860399687006042 0.9869734381461056 1.045088358555206 0.9535609429540349 1.0951760804983597 0.9877493832539733 0.708851565188334 1.0 19.59978567950032 1.4459237623444012 24.99062973437692 0.8523836646887594 1.0102363980511178 0.2369770630333684 0.10497599406700224 27.256452014456794 21836.960249389438 0.05248894782183528 0.024213044828618514 27.92053670813318 -1.4459237623444012 0.1578527333623584 SQSFT(ph)HSPSGDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 SQS(0.138)FT(0.862)HSPSGDPK 249.47 1.6162e-16 434150000.0 503130.0 342070.0 331270.0 356910.0 327120.0 427340.0 368370.0 366160.0 605410.0 450660.0 True False 500421.2039829985 353455.5931643188 377909.93654954253 402094.76940519316 368776.7930078552 397798.9916501555 350550.53578994505 393484.71852280555 456214.8175783762 421898.49297056237 1.18611754324971 0.8377740121223446 0.8957366353425464 0.9530604543620614 0.8740889080008786 0.9428784370602424 0.8308883336409653 0.9326525813171384 1.0813378696050668 1.0 18.686536408669166 1.28811580053319 8.71283218814052 1.040358840421375 0.9219378550102434 0.16434750647356244 0.09641131821896988 0.384930967158908 62.48048981107236 0.060848330565702755 0.022028215932748327 19.414034655336824 -1.28811580053319 -0.11842098541113166 SQSGGYSDR ddPTM_BT-474_Trastuzumab_2h_R1 5 SQSGGYSDR 9 0 Q14011;K7EMY9;K7EPM4;K7EQR7;D6W5Y5;Q14011-2;Q14011-3;F6WMK9 Q14011 CIRBP Cold-inducible RNA-binding protein 0 ;;;; 169.09 0.00013664 1988811000.0 1443819.0 1771754.0 1679672.0 1811411.0 1747752.0 1334046.0 1708413.0 1555268.0 1822487.0 1630165.0 False True 1436045.6389273717 1830725.7608420912 1916155.2176292513 2040735.4468718444 1970317.8574622928 1241826.540026498 1625770.536418565 1671329.9956508835 1373359.4989246328 1526126.4740455274 0.940974200598614 1.1995898059412584 1.2555677725384171 1.3371994271629188 1.2910580420240545 0.8137114198239457 1.065292139326367 1.0951451429975156 0.8998988761947542 1.0 20.541443096318023 2.757464622277455 24.985983161338897 0.9976635296843193 1.214751378719627 0.45443579362019915 0.12455686324226126 830.9943149340307 1098348.5848123329 0.03956853103611614 0.04190419670496005 572.0903501503328 -2.757464622277455 0.21708784903530765 SQSS(ph)DT(ph)EQQSPTSGGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 S(0.003)QS(0.023)S(0.974)DT(0.717)EQQS(0.282)PT(0.001)SGGGK 130.39 0.00016143 167760000.0 530940.0 433390.0 427310.0 421640.0 454100.0 519020.0 564350.0 552650.0 739780.0 638030.0 True False 528081.4780329796 447815.1241602131 487471.5337548972 475019.5807682767 511926.94333842985 483141.3690416618 537050.234473642 593891.5492998379 557471.1315441289 597310.3791550356 0.8840989483223308 0.7497193080650955 0.8161109379088337 0.7952642333793809 0.8570534871043252 0.8088614996530296 0.8991141845439911 0.9942762925699801 0.9333022679644979 1.0 19.188121265403392 2.0286089958835647 2.9228675482597506 0.9735108931789768 0.8156182361462769 0.7775762329265804 0.0377641475449733 0.11161212031723652 1.866998976149261 0.01710027386652324 0.010273827102904391 106.80928206121523 -2.0286089958835647 -0.15789265703269983 SQSS(ph)DTEQQS(ph)PTSGGGK ddPTM_BT-474_Trastuzumab_2h_R1 5 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 SQS(0.005)S(0.995)DTEQQS(1)PTSGGGK;S(0.004)QS(0.142)S(0.854)DTEQQS(0.999)PT(0.001)SGGGK;SQS(0.057)S(0.943)DTEQQS(0.999)PT(0.001)SGGGK;SQS(0.001)S(0.999)DTEQQS(1)PTSGGGK;SQS(0.044)S(0.956)DTEQQS(0.994)PT(0.006)SGGGK 361.15 3.466099999999998e-88 1372980000.0 3246540.0 2573610.0 2428490.0 2429600.0 2557020.0 3135650.0 3172750.0 3101010.0 4256690.0 3299640.0 True False 3229060.989364504 2659271.0530699003 2770400.2831865195 2737187.1108874967 2882641.340355059 2918889.896026143 3019271.9614179917 3332423.112809716 3207685.7862237124 3089054.1502360674 1.0453235302196748 0.8608690310160724 0.8968441951640128 0.8860923045581183 0.9331792840649187 0.9449138001685984 0.9774098525230634 1.0787842979557514 1.0384038706406553 1.0 21.55873373054298 2.0792850378433285 2.4089612291054854 1.0462159637796091 0.9198776636908476 0.49000127824610673 0.050133989107017274 0.21543264687408947 2.429602207862999 0.024251958875551902 0.014427734795916039 120.0286821602177 -2.0792850378433285 -0.12633830008876157 SQSS(ph)DTEQQSPTSGGGK ddPTM_BT-474_Trastuzumab_2h_R1 7 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SQS(0.001)S(0.999)DTEQQSPTSGGGK;SQSS(1)DTEQQSPTSGGGK;SQS(0.002)S(0.998)DTEQQSPTSGGGK;SQS(0.062)S(0.938)DTEQQSPTSGGGK;SQS(0.007)S(0.993)DTEQQSPTSGGGK;SQS(0.032)S(0.968)DT(0.001)EQQSPTSGGGK;S(0.014)QS(0.147)S(0.84)DTEQQSPTSGGGK 461.11 4.093899999999997e-206 4296544000.0 4838399.0 4100655.0 4167344.0 3943646.0 3988346.0 4939704.0 4902949.0 4816653.0 6201329.0 5022369.0 True False 4812349.597380667 4237142.822776707 4754069.811996609 4442911.179248861 4496238.222321188 4598233.88929246 4665774.625785963 5176096.105328347 4673094.56150129 4701837.110553572 1.0235041079111487 0.9011675060512349 1.01110899850737 0.9449309014292445 0.9562726476059955 0.9779653742090367 0.9923301288582148 1.1008667428546748 0.9938869534659617 1.0 22.164793128760202 1.9672391271718996 9.561717350235758 1.0438130297068897 0.9678227080000255 0.2914305410231609 0.042243284366378954 0.45048558157399565 127.58769758756637 0.016278465819227046 0.010515114719440671 92.73402862816168 -1.9672391271718996 -0.07599032170686426 SQSSDTEQQS(ph)PTSGGGK ddPTM_BT-474_Trastuzumab_2h_R1 10 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SQSSDTEQQS(0.794)PT(0.205)SGGGK;SQSSDTEQQS(0.858)PT(0.132)S(0.01)GGGK;SQSSDTEQQS(0.816)PT(0.176)S(0.008)GGGK;SQSSDTEQQS(0.955)PT(0.042)S(0.004)GGGK;SQSSDTEQQS(0.996)PT(0.004)SGGGK;SQSSDTEQQS(0.921)PT(0.079)SGGGK;SQSSDT(0.005)EQQS(0.976)PT(0.016)S(0.003)GGGK;SQSSDT(0.006)EQQS(0.99)PT(0.004)S(0.001)GGGK;SQSSDTEQQS(0.751)PT(0.248)SGGGK;SQSSDTEQQS(0.696)PT(0.303)S(0.001)GGGK 404.8 3.061099999999999e-140 7026501000.0 6133064.0 5216861.0 5018754.0 4744581.0 4867895.0 5938747.0 6411977.0 6117053.0 7488111.0 6344338.0 True False 6100044.264871466 5390501.064725924 5725350.939408227 5345244.468127148 5487792.573975831 5528215.398196723 6101805.176379193 6573538.556625751 5642766.3795967 5939436.917178961 1.0270408373608568 0.9075777956551202 0.9639551727283234 0.8999581176907195 0.9239583904163012 0.9307642248387487 1.0273373152142764 1.106761238192924 0.9500507301080705 1.0 22.50189473346475 2.204996981821518 6.215120783967669 1.038936291363716 0.9387916827326523 0.35004171014641083 0.05028331737420104 0.1556393315631365 17.036424952657494 0.01835506442246224 0.013760859736171084 160.3234248794099 -2.204996981821518 -0.10014460863106356 SQSSDTEQQSPT(ph)SGGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SQSSDTEQQS(0.091)PT(0.906)S(0.003)GGGK 291.97 5.7975e-45 534760000.0 336120.0 288480.0 276710.0 258190.0 261100.0 313150.0 350140.0 335700.0 390790.0 332150.0 True False 334310.36726644274 298081.8824101575 315668.3627935637 290876.8275271828 294349.53733905277 291502.67757580907 333202.39053530776 360751.63865006005 294485.0408177168 310951.90263207845 1.075119220807606 0.9586108973349846 1.0151678125187926 0.9354399348099546 0.9466079314759178 0.9374526256580527 1.0715560436031688 1.160152536763556 0.9470437013731818 1.0 18.246331919099962 2.2244125248613367 24.749229184102763 1.0694583373105306 0.9755009954974899 0.1572936033913045 0.06611319517539328 254.22855451345353 444718.439757308 0.02464061927634438 0.01828792890303472 167.65346158956802 -2.2244125248613367 -0.09395734181304072 SQSSEGVSSLSSS(ph)PSNSLETQSQSLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSSEGVSSLSSSPSNSLETQSQSLSR 27 0 O95155-2;O95155;O95155-4 O95155-2 UBE4B Ubiquitin conjugation factor E4 B 1 SQSSEGVSSLS(0.003)S(0.047)S(0.686)PS(0.241)NS(0.022)LET(0.001)QSQSLSR 100.66 0.0019087 333190000.0 58481.0 66328.0 77413.0 73644.0 80476.0 72378.0 75457.0 63978.0 76611.0 72818.0 True False 58166.14479384994 68535.68738387727 88312.0775141416 82967.32284911061 90724.14158137722 67374.67921948567 71806.85663626745 68752.36323370127 57731.245584805416 68170.69289737372 0.8532426813002335 1.005354126105965 1.2954551840493882 1.2170526559560162 1.3308378971291397 0.9883232274155347 1.0533391048902454 1.0085325571973165 0.8468631186089868 1.0 16.056864026440717 2.0123370904941225 1.474830551412236 0.9432149168447754 1.1376084303281013 0.2242763951806206 0.14093421974891873 0.6415182937349161 2.6047492897306697 0.10096779983182942 0.04869822648096419 102.88145330975655 -2.0123370904941225 0.1943935134833259 SQSSEGVSSLSSSPS(ph)NSLETQSQSLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSSEGVSSLSSSPSNSLETQSQSLSR 27 0 O95155-2;O95155;O95155-4 O95155-2 UBE4B Ubiquitin conjugation factor E4 B 1 SQSSEGVSSLS(0.002)S(0.016)S(0.111)PS(0.715)NS(0.156)LET(0.001)QSQSLSR 111.01 0.0008609999999999999 275120000.0 85926.0 121350.0 123610.0 145790.0 136820.0 128190.0 135460.0 120840.0 159280.0 147930.0 True False 85463.38396327598 125389.06139237579 141013.2135626195 164246.99905181464 154243.216004325 119328.52702680176 128907.28229254807 129857.6944130866 120027.57824265184 138488.9807507553 0.617113242511967 0.9054082188534841 1.0182269578285594 1.1859932693664428 1.1137580417457422 0.8616463662301231 0.9308125570260942 0.9376752844097914 0.8666940690297285 1.0 17.07941166335616 4.708415648989714 2.9237928043958465 0.9875540460451899 0.5670256479239182 0.5724476398799402 0.0963972099545394 0.2867045990375724 3.6654752861045203 0.026335587412470312 0.2737999630966576 51099.38214299655 -4.708415648989714 -0.42052839812127174 SQSSHS(ph)YDDSTLPLIDR ddPTM_BT-474_Trastuzumab_2h_R1 7 SQSSHSYDDSTLPLIDR 17 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;H0YC95 O60716-13 CTNND1 Catenin delta-1 1 SQSS(0.002)HS(0.998)YDDSTLPLIDR;SQSSHS(0.994)YDDS(0.005)T(0.001)LPLIDR;SQSS(0.001)HS(0.999)YDDSTLPLIDR;SQSS(0.003)HS(0.996)YDDSTLPLIDR;SQSSHS(1)YDDSTLPLIDR;S(0.002)QS(0.054)S(0.449)HS(0.495)YDDSTLPLIDR;SQSS(0.001)HS(0.999)YDDSTLPLIDR 269.16 2.2826e-28 7677940000.0 1745490.0 2603750.0 2694610.0 2801790.0 2811900.0 3172000.0 2983700.0 2553140.0 2877110.0 2699180.0 True False 1736092.475782168 2690414.2447498855 3073987.6660300097 3156496.3267259994 3169978.7975629345 2952727.106084835 2839367.0321591254 2743668.2713822247 2168084.7917988184 2526916.0215157415 0.6870400365504798 1.0647026738688654 1.2164977545182185 1.2491496748802169 1.254485218571474 1.1685101843288308 1.1236491470167511 1.0857773855644268 0.8579963771405105 1.0 21.26894628847193 -0.9465852205175693 5.075690587732782 0.9999995682731957 1.0965746679986166 0.00900309619066686 0.1715443930436562 8.491165841824157e-07 1.7612145099033063e-07 0.16710555112854503 0.03938697887853753 0.11308754587033945 0.9465852205175693 0.09657509972542089 SQSSHSYDDSTLPLIDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SQSSHSYDDSTLPLIDR 17 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;H0YC95 O60716-13 CTNND1 Catenin delta-1 0 ;;; 263.08 2.2208e-27 3965670000.0 625830.0 1063840.0 1184750.0 1213670.0 1212910.0 1237810.0 1187210.0 1034810.0 1092310.0 1201300.0 False True 622460.6008162498 1099249.27129514 1351552.5019683964 1367320.4975596126 1367366.8990191899 1152243.108191321 1129780.1167173777 1112032.776858707 823124.8367041118 1124632.0055153272 0.5534793583711206 0.9774301868560495 1.2017731091950294 1.2157936914956293 1.2158349507336286 1.0245512332394824 1.0045775962064067 0.9887970210745984 0.7319059324893931 1.0 20.10102157906158 -1.0380382981488094 6.8436600655047775 1.0000000055306257 1.0099075377069335 0.0 0.20222820253406346 8.55575766452737e-09 8.651514529385824e-10 0.19866912300859912 0.046826749501778564 0.09161396970127178 1.0380382981488094 0.009907532176307798 SQSSSLLDMGNMSAS(ph)DLDVADR ddPTM_BT-474_Trastuzumab_2h_R1 1 SQSSSLLDMGNMSASDLDVADR 22 0 Q9NV70;Q9NV70-2 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 1 SQSSSLLDMGNMS(0.128)AS(0.872)DLDVADR 147.8 4.8597e-08 33297000.0 48138.0 42932.0 40949.0 41438.0 44650.0 47251.0 38689.0 43467.0 58040.0 42156.0 True False 47878.830356634564 44360.96566705796 46714.26326491142 46684.046551266125 50335.91283871588 43984.64958688987 36817.465263667415 46710.72826095369 43736.81969615461 39465.56798843262 1.2131798121002055 1.1240422456370116 1.1836713785192043 1.182905731014672 1.2754387027565235 1.1145069443769768 0.9329009346693968 1.1835818066686545 1.1082272959804835 1.0 15.26830689219005 2.487182559666732 24.992534687632624 1.0716839404915481 1.1909139380032512 0.45765483001643814 0.07105242684646051 508.2298485466767 1262459.5143215393 0.023996713252986013 0.02124868195806774 307.03123511072096 -2.487182559666732 0.11922999751170305 SQT(ph)PERPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQTPERPAK 9 1 A8CG34-2;A8CG34;A6NF01;C9JFL1;Q96HA1-2;Q96HA1-3;Q96HA1 A8CG34-2;Q96HA1-2 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 1 SQT(1)PERPAK 117.79 0.0017687999999999996 279810000.0 1291600.0 1060000.0 1122800.0 941890.0 1048400.0 1351500.0 1245000.0 1240600.0 1550400.0 1305000.0 True False 1284646.1691102504 1095281.4592164678 1280880.4804474493 1061133.1774258427 1181907.525646354 1258073.9860887956 1184774.5936381398 1333179.8716391555 1168324.6942956261 1221713.782733291 1.0515115629097376 0.8965123212132704 1.0484292626885054 0.8685611903729303 0.967417690092781 1.0297616380116115 0.9697644492374404 1.0912374817090842 0.9562998394614003 1.0 20.220474906365858 2.780193413486304 7.335782649268699 1.0179839411744354 0.961530893634206 0.09237419139216252 0.06364401668978739 0.4697314011522099 71.4905501504795 0.01841257663359792 0.019400770989888162 602.82799635877 -2.780193413486304 -0.056453047540229395 SQT(ph)PERPAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQTPERPAKK 10 2 A8CG34-2;A8CG34;A6NF01;C9JFL1;Q96HA1-2;Q96HA1-3;Q96HA1 A8CG34-2;Q96HA1-2 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 1 S(0.074)QT(0.926)PERPAKK 82.54299999999998 0.028455 141360000.0 140230.0 128450.0 123430.0 108490.0 122380.0 161140.0 156530.0 153560.0 215880.0 163350.0 True False 139475.0172610176 132725.38060033534 140807.87112720727 122224.82287626984 137964.3675969104 150000.77108275858 148958.0458973316 165019.42696188006 162679.26664379498 152924.86314902885 0.912049318789293 0.8679123712603316 0.9207650621860404 0.7992475543833503 0.9021709403948323 0.9808788969559471 0.9740603511423026 1.0790882761887108 1.0637855957095756 1.0 17.22246345945931 2.4225322491621673 1.5137822628748856 1.049585186717188 0.8759707604422959 0.7572395642757832 0.040537138270683316 0.17803285196581853 0.8255724864856414 0.019999365222105193 0.014406748993420855 264.56491439172464 -2.4225322491621673 -0.173614426274892 SQT(ph)PPGVAT(ph)PPIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 S(0.421)QT(0.579)PPGVAT(1)PPIPK 76.85 0.04092 194910000.0 105280.0 109050.0 115590.0 112620.0 120410.0 136800.0 135500.0 143870.0 169860.0 158560.0 True False 104713.18417770756 112679.66332788282 131864.0672737092 126877.68045281117 135743.49977401504 127343.33799256154 128945.34733973307 154606.309957057 128000.27900738857 148440.56504995422 0.705421622064486 0.7590894260606129 0.8883290576894086 0.8547372506303343 0.9144636422552941 0.8578742471756767 0.8686665083519421 1.0415367922173284 0.8622998636815553 1.0 17.179525872320372 6.528361527266426 0.29494161649657286 0.9732407082169817 5.841200385852482e-15 0.6513200457746557 0.05545317600376206 13.666950371711565 0.41998549645194166 0.059478424102425126 5.869302117777648 3375681.994635666 -6.528361527266426 -0.9732407082169758 SQT(ph)PPGVATPPIPK ddPTM_BT-474_Trastuzumab_2h_R1 6 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 S(0.046)QT(0.953)PPGVAT(0.001)PPIPK;S(0.046)QT(0.954)PPGVATPPIPK;S(0.001)QT(0.999)PPGVATPPIPK;S(0.042)QT(0.958)PPGVATPPIPK;S(0.001)QT(0.999)PPGVATPPIPK;S(0.031)QT(0.969)PPGVATPPIPK 171.44 3.3715e-05 15510170000.0 6870340.0 6111070.0 5763190.0 5704240.0 5597130.0 6672590.0 7045710.0 6600860.0 9101650.0 6857480.0 True False 6833350.852806524 6314473.270730169 6574597.057454512 6426396.199131104 6309891.328711352 6211329.558887339 6704882.090074029 7093449.69168791 6858670.313361572 6419829.755415997 1.064413093983009 0.9835888974163302 1.0241076956765012 1.0010228376709784 0.9828751803563177 0.9675224726399078 1.0444018526219565 1.104928006183283 1.0683570397759152 1.0 22.614103608996725 2.0220568112102915 9.072929122193841 1.0707494330805876 1.0030214681444074 0.31583122008688436 0.03527186572664575 0.2128645946897683 79.61321683772123 0.012826610422900267 0.009364986185409109 105.20994927403085 -2.0220568112102915 -0.06772796493618016 SQT(ph)PPRR ddPTM_BT-474_Trastuzumab_2h_R1 7 SQTPPRR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.007)QT(0.993)PPRR;S(0.006)QT(0.994)PPRR;S(0.025)QT(0.975)PPRR;S(0.293)QT(0.707)PPRR;S(0.304)QT(0.696)PPRR;S(0.019)QT(0.981)PPRR;S(0.128)QT(0.872)PPRR 78.939 0.019911 3254684000.0 501049.0 500552.0 474207.0 445378.0 461648.0 454120.0 507209.0 477679.0 583289.0 508708.0 True False 498351.407855777 517212.57072992605 540971.2237188659 501762.8091343646 520436.1363979282 422727.75328349514 482673.3629434593 513325.8325848139 439545.2416221634 476241.81991316954 1.0464251290376778 1.0860293008795963 1.1359170931639269 1.0535882993766656 1.0927980589626007 0.887632575737613 1.0135047842532232 1.0778680307378417 0.92294549374581 1.0 18.861334787048953 SQT(ph)PSPSTLNIDHMEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SQTPSPSTLNIDHMEQK 17 0 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 S(0.014)QT(0.874)PS(0.11)PS(0.001)TLNIDHMEQK 222.62 1.215e-14 217000000.0 333420.0 242370.0 226960.0 216180.0 232010.0 305590.0 269310.0 242240.0 364900.0 286070.0 True False 331624.90376644453 250437.13893424105 258913.9952283156 243548.3658345655 261555.09826899157 284465.28258148313 256282.4464358933 260317.17886979555 274975.28440949036 267812.7676831509 1.2382714485023723 0.9351202375479465 0.9667724114431937 0.909397889956865 0.9766341632316695 1.0621796900961564 0.956946334758397 0.9720118317054123 1.0267444931334022 1.0 18.03086521565947 4.744091287974552 24.96991781278037 0.9764074805521004 1.2382715615195072 0.7799651682481332 0.04139222624570622 267.3794594078199 1207130.0827441732 0.010010374532028627 0.08767639243302455 55474.23066096677 -4.744091287974552 0.2618640809674069 SQTDKDYYQLQAILEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 SQTDKDYYQLQAILEAER 18 1 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 0 ; 157.97 4.3916e-10 152090000.0 220300.0 219848.0 221266.0 218488.0 217818.0 251813.0 241316.0 216192.0 268540.0 238017.0 False True 219113.92927763102 227165.50777907748 252418.32952145106 246148.55839792042 245555.83119156567 234405.7600140422 229642.6231633582 232325.3448407319 202361.915251643 222826.55128339416 0.9833385115715345 1.0194723495503235 1.1328018499932786 1.1046643991939047 1.1020043606888843 1.0519651211399912 1.0305891368901332 1.0426286432322738 0.9081588979684744 1.0 17.765561624182162 1.3921553335793335 4.432924923391884 0.9550252878361457 1.0628393306810886 0.4404444441829437 0.04697240049139139 0.19931457689709883 6.17503372045569 0.0358005997337562 0.012572737116194343 24.66921520281178 -1.3921553335793335 0.10781404284494289 SQTEAVTFLANHDDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQTEAVTFLANHDDSR 16 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 0 ; 168.29 6.0284e-09 372990000.0 319890.0 353000.0 311170.0 297630.0 334150.0 440720.0 355300.0 308940.0 452940.0 364630.0 False True 318167.74778311996 364749.39160699345 354980.0312618743 335309.92748330854 376702.02183778025 410254.0637432883 338112.78162219346 331994.6715655326 341319.00608504977 341359.001224551 0.9320619835474164 1.0685213815910362 1.0399023608238271 0.9822794368405616 1.1035362198929686 1.2018258263927164 0.9904903061272372 0.9725675033456687 0.9998828355503803 1.0 18.38093026894219 2.04762660110603 24.999999372811242 0.9862070686723331 1.0571223680045625 0.17653368397744706 0.06732360374424201 194.39836523080956 102042.03428969927 0.02617143409619773 0.019328879819898222 111.59034007407844 -2.04762660110603 0.0709152993322294 SQTTTERDS(ph)DT(ph)DVEEEELPVENR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 SQTTTERDS(1)DT(1)DVEEEELPVENR;SQTTTERDS(1)DT(1)DVEEEELPVENR 251.39 1.2688e-38 2980200000.0 806620.0 887350.0 924580.0 946070.0 962930.0 1157770.0 1048980.0 972140.0 1177930.0 1021270.0 True False 802277.2475439077 916884.9083355967 1054752.8274065752 1065842.3649972582 1085553.4277667336 1077736.0849974286 998236.8299072562 1044686.0232268955 887644.9349533316 956091.674246764 0.8391216754146137 0.9589926709255621 1.1031921475914317 1.1147909700573 1.135407259583097 1.1272309068547213 1.044080663806319 1.0926630273712283 0.9284098574047759 1.0 19.866789431178656 4.499069558626141 2.88536980729677 1.0769214493584742 0.8417135125805753 0.5755400294651299 0.06171813161631172 0.18990482410858514 2.877749231728455 0.01528821919245328 0.07946191853207234 31555.099840730596 -4.499069558626141 -0.23520793677789897 SQTTTERDS(ph)DTDVEEEELPVENR ddPTM_BT-474_Trastuzumab_2h_R1 2 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 SQTTTERDS(0.999)DT(0.001)DVEEEELPVENR;SQTT(0.001)T(0.003)ERDS(0.996)DTDVEEEELPVENR 302.08 3.297799999999998e-62 5534100000.0 376140.0 494830.0 449860.0 482310.0 504590.0 489320.0 542580.0 500010.0 470610.0 600680.0 True False 374114.9040330824 511300.1174189479 513196.37774678366 543370.3965476422 568846.5455607532 455494.4601353826 516333.3325431169 537323.2851993333 354634.4713509187 562344.0881319786 0.6652775621343067 0.909230003852995 0.9126020679821563 0.9662596406990528 1.0115631293473266 0.8099924401240988 0.9181804226986675 0.9555062399326352 0.6306360800003435 1.0 19.1010936339528 4.739032183311355 23.686721988189916 0.9061283470392283 0.6652774358286024 0.310182125131201 0.10550697319626808 21.58144183786721 1083322.8719181207 0.02384152707477607 0.14069002190963192 54831.759638827 -4.739032183311355 -0.24085091121062585 SQVAELNDDDKDDEIVFK ddPTM_BT-474_Trastuzumab_2h_R1 3 SQVAELNDDDKDDEIVFK 18 1 Q9BYG3;H7BZL0;C9J808 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 0 ;; 173.27 7.9595e-12 903210000.0 1229860.0 893180.0 664120.0 625680.0 578690.0 976520.0 983030.0 894770.0 1563970.0 926310.0 False True 1223238.5704102914 922908.9563612891 757622.3233654791 704891.023847584 652382.7413356428 909015.470880821 935477.0833607224 961542.2809499963 1178550.5496243103 867192.1027461095 1.4105739276645866 1.064249724413706 0.8736499340415356 0.8128429924758634 0.7522932223088324 1.0482284928590457 1.0787426227687926 1.108799628023723 1.35904206910122 1.0 19.725992093004862 1.978841513804538 1.9188925152254368 1.1731953119923288 0.9718257219442643 0.12844216152488086 0.18868223475406806 0.6586731075991147 4.5068783830722845 0.11915698890255698 0.05994600311425419 95.24485255070473 -1.978841513804538 -0.20136959004806454 SQVEEELFSVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SQVEEELFSVR 11 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 218.36 2.483e-11 441620000.0 441790.0 525610.0 500650.0 524700.0 482160.0 590480.0 537940.0 471540.0 539320.0 513670.0 False True 439411.4517274834 543104.6111120454 571137.1682721898 591126.9662012965 543560.2180137787 549661.507440408 511917.787069639 506728.7092316028 406411.81251774833 480887.1408249874 0.9137517193195264 1.129380607225888 1.1876740294871968 1.229242614363085 1.130328037221524 1.1430156075652897 1.0645279185286944 1.053737283060393 0.8451292996118119 1.0 18.87533882274221 1.5245778850748228 2.4529531431587546 0.9254378920177001 1.1252990011921358 0.4118531990205808 0.08806952474182543 0.2448725421263642 3.0740519494723864 0.06823623275000933 0.02385570815863469 33.4640025814726 -1.5245778850748228 0.19986110917443567 SRAS(ph)PVSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.388)RAS(0.579)PVS(0.033)R;S(0.275)RAS(0.724)PVS(0.001)R;S(0.038)RAS(0.935)PVS(0.027)R;S(0.269)RAS(0.73)PVSR;S(0.052)RAS(0.947)PVS(0.001)R;S(0.114)RAS(0.881)PVS(0.005)R 77.062 0.020703 7702313000.0 1308294.0 1608214.0 1438695.0 1361323.0 1440956.0 1397675.0 1639475.0 1238996.0 1470717.0 1361516.0 True False 1301250.2904691293 1661742.4308041062 1641250.7506388875 1533666.352220409 1624453.2053846512 1301057.017023054 1560167.330847299 1331456.173014208 1108278.5019481287 1274622.8832275083 1.0208904198975284 1.303713006153131 1.2876363450207566 1.2032314595960882 1.2744579018315816 1.0207387880316499 1.2240226904578675 1.0445883174816308 0.8694952181792199 1.0 20.281639036036154 1.5511833859536535 3.3381990561642323 0.9360710049522184 1.195983211285891 0.5234195528465646 0.09901984155993644 0.1529384553785471 3.8231888064300388 0.06464940475940968 0.025555649194203348 35.578151978647824 -1.5511833859536535 0.2599122063336726 SRDAT(ph)PPVS(ph)PINMEDQER ddPTM_BT-474_Trastuzumab_2h_R1 4 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 S(0.441)RDAT(0.559)PPVS(1)PINMEDQER;S(0.004)RDAT(0.996)PPVS(1)PINMEDQER;S(0.106)RDAT(0.894)PPVS(1)PINMEDQER;S(0.008)RDAT(0.992)PPVS(1)PINMEDQER 123.2 7.9013e-05 1874320000.0 1005860.0 1210430.0 1065590.0 1137600.0 1150100.0 1187510.0 1169790.0 1145670.0 1268800.0 1240190.0 True False 1000444.5615215519 1250718.4308296135 1215615.809725683 1281620.0433592438 1296558.4178232271 1105420.2287978588 1113202.7886682395 1231165.712994382 956121.2410489487 1161040.0124199227 0.8616796585988055 1.0772397311465405 1.0470059573502635 1.1038551898723967 1.116721563385957 0.952094860618854 0.9587979542135008 1.0603990386414834 0.8235041263187238 1.0 20.14698626135978 2.7099666756851852 24.501944107352646 0.9707545749605023 1.0470893068045253 0.17773885008702428 0.08626823335826318 1071.2989919383044 917987.0259222228 0.027711799056606833 0.026132556892157936 512.8220325852548 -2.7099666756851852 0.07633473184402295 SRDDALEAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRDDALEAIK 10 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;A0A087WW94;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 0 ; 119.03 0.0028125 224540000.0 479620.0 507340.0 518450.0 473680.0 452160.0 535330.0 550710.0 474850.0 649470.0 556210.0 False True 477037.77921079117 524226.50520649337 591443.2535518166 533647.8394324961 509739.8958377103 498323.89713127195 524070.0533835015 510285.71823944186 489416.82095212874 520712.2016046609 0.9161256020902145 1.006749032557721 1.135835211330148 1.0248422022529373 0.9789282722142143 0.9570044558118752 1.006448575179327 0.9799764950137752 0.9398988912568397 1.0 18.990126687556927 3.2437118968579175 6.703567130904382 0.9773205157678826 1.02829660561655 0.1367457280540435 0.05272465398817198 0.26656964932641436 55.90188679487964 0.015520316354146045 0.019982210699654855 1752.717394921083 -3.2437118968579175 0.050976089848667305 SRDEIVEMIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRDEIVEMIR 10 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 0 157.68 0.004534300000000001 0.0 69377.0 79697.0 78137.0 80772.0 72709.0 83873.0 81167.0 66294.0 94560.0 75629.0 False True 69003.4819405094 82349.6664671461 89138.01042102087 90997.72691826032 81968.06016999298 78075.056925805 77240.64212194925 71241.19491411089 71256.95503908301 70802.29247075552 0.9745938942444681 1.1630932218919345 1.2589706817450692 1.2852370134179822 1.1577034769580294 1.1027193357906235 1.0909341975593947 1.0061989863327754 1.006421579760504 1.0 16.111508452889453 2.1563345369928872 1.4093289457360443 1.0012970060379394 1.1772719892894798 0.4384065258108697 0.07861735471438044 0.40418584065730534 1.5387093608168296 0.052426028047307095 0.028431856512194882 143.32915384709403 -2.1563345369928872 0.17597498325154048 SRDHDKPHQQSDK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRDHDKPHQQSDK 13 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 0 ;; 114.7 0.0004336 76062000.0 101225.0 94867.0 97896.0 89689.0 91267.0 125514.0 115924.0 73299.0 156592.0 124367.0 False True 100680.01584715465 98024.59074668738 111678.90587271412 101043.61820397973 102889.31146810936 116837.51260817536 110316.31324731544 78768.94358478015 118001.99982529705 116429.7915840545 0.8647272702061862 0.8419201770701461 0.9591952742790014 0.8678502025062289 0.8837026165578092 1.0035018616676514 0.9474921473828668 0.6765359837298537 1.0135034875511868 1.0 16.829100730890143 2.5723800554639222 0.007430302864401889 1.782508846888424 1.0827677951294167e-06 0.04827372015122511 0.09501953015991645 22353.968224373195 73.69780308928223 8683.852403591503 8990.914683705581 373.5769357208492 -2.5723800554639222 -1.7825077641206288 SRDPFWNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRDPFWNR 8 1 O75694;O75694-2;E9PF10 O75694 NUP155 Nuclear pore complex protein Nup155 0 ; 122.19 0.0012779000000000002 242890000.0 107449.0 138284.0 137379.0 124449.0 117652.0 113731.0 129478.0 105100.0 139402.0 136403.0 False True 106870.50652270626 142886.6993455567 156720.7690803258 140204.2306399564 132634.284821962 105869.04366397686 123214.65448600703 112943.09568698633 105048.24499109837 127697.64375951642 0.8369027287924562 1.1189454647624095 1.2272800379579947 1.0979390575443406 1.038658826561768 0.8290602750928767 0.9648937197153624 0.8844571627310819 0.8226326022814329 1.0 16.962372379525824 2.8952801880054713 4.920502268255159 0.8985005216576982 1.0833382172524466 0.3810557818450693 0.10423545952340502 0.226057403225804 8.510187351289174 0.03231748067803265 0.03463170164506135 785.7423981135263 -2.8952801880054713 0.18483769559474839 SRDPHYDDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRDPHYDDFR 10 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 0 ; 100.55 0.002364 276610000.0 80629.0 135244.0 113058.0 109238.0 109293.0 104462.0 115506.0 91194.0 96047.0 109536.0 False True 80194.9024227241 139745.51478327546 128975.58368224773 123067.51959957562 123210.81571963656 97240.78781709772 109918.5335042304 97999.35935374913 72377.50381386228 102545.3187015124 0.7820435241530079 1.3627683501578938 1.257742287170302 1.200128110750711 1.2015255038435937 0.9482713501544128 1.0719020126523753 0.9556687774212727 0.7058099260926556 1.0 16.64590210725636 2.1972919946912293 1.1045799015722704 0.8786787706500836 1.1768397815998037 0.30678508150645967 0.1663011103108135 0.5754385154530332 1.3344218441099436 0.11325770066987549 0.061658381555303746 157.50414760692505 -2.1972919946912293 0.29816101094972014 SRDPQLCR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRDPQLCR 8 1 Q8TAT6;Q8TAT6-2;I3L4S2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 ;;; 128.38 0.0010359000000000002 535474000.0 195293.0 201093.0 208076.0 229411.0 190454.0 185481.0 205104.0 171687.0 250333.0 209216.0 False True 194241.56418709207 207786.25894171462 237371.29217098595 258454.40907796053 214707.18799070062 172659.13504530958 195182.335946632 184499.15574892107 188641.78644034243 195863.65576117093 0.9917182615234305 1.060871952656095 1.2119210746297309 1.3195628769081615 1.0962073956819576 0.8815271744740836 0.9965214587061026 0.9419774946603299 0.9631280785975189 1.0 17.57949019201379 2.9131066852142204 5.884554181668759 0.9568526738692653 1.1519578883974229 0.5218686986960295 0.08673960914097585 0.19167001637349634 10.33692539174336 0.02852049587601797 0.03048503724300987 818.6658701671289 -2.9131066852142204 0.19510521452815754 SRDRSHER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRDRSHER 8 2 P18615;P18615-3;A0A0A0MT02;E9PD43;A0A0A0MSN9;P18615-4;A0A0G2JI50 P18615 NELFE Negative elongation factor E 0 13.053 0.09512 10873000.0 22823.0 28567.0 27167.0 30500.0 30539.0 29558.0 27979.0 24808.0 29762.0 29172.0 False True 22700.12350387367 29517.83532588383 30991.877460202915 34361.29687276456 34427.96063116557 27514.72503204781 26625.548879840546 26659.29893247148 22427.553890367915 27310.217984594256 0.8311952514139159 1.0808348487930377 1.1348088644948016 1.2581846432770265 1.2606256255657295 1.007488297880629 0.974929928968713 0.9761657320900932 0.8212147520396703 1.0 14.737153208996407 2.510279182917782 8.962114180229426 0.9515201040033412 1.1220582342314238 0.3079727239918455 0.12028422528635424 0.48865096491616133 126.59286926707242 0.04154365921564164 0.038544959618467156 323.8017435369512 -2.510279182917782 0.17053813022808262 SRDS(ph)GDENEPIQER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRDSGDENEPIQER 14 1 Q8WX93-8;Q8WX93-3;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93;Q8WX93-4;Q8WX93-7 Q8WX93-8 PALLD Palladin 1 S(0.339)RDS(0.661)GDENEPIQER 123.6 6.1738e-05 97613000.0 22109.0 29108.0 26636.0 27964.0 29009.0 30482.0 32159.0 28152.0 29506.0 30327.0 True False 21989.967600540822 30076.84218384242 30386.11727573766 31504.23953278649 32703.12420018607 28374.851086909828 30603.34631068986 30252.84519295944 22234.641660143658 28391.504895749014 0.774526312757494 1.059360618406168 1.0702538448494603 1.1096361270199362 1.1518630069194615 0.9994134228213567 1.0779050431832522 1.0655597617683563 0.7831441743502928 1.0 14.79317170089401 -0.3916942930661125 6.216870054749309 0.9999996871289403 1.0262852866491101 0.0 0.1237633630047581 0.0 0.0 0.11501238261408428 0.0271086785556136 0.4057940799753233 0.3916942930661125 0.026285599520169844 SREDEDALEQAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SREDEDALEQAR 12 1 O60885 O60885 BRD4 Bromodomain-containing protein 4 0 ; 103.76 0.0020166 569680000.0 1438760.0 933930.0 907430.0 832950.0 856410.0 1288300.0 1284480.0 1250790.0 2304500.0 1265330.0 False True 1431013.8760212641 965015.295477392 1035188.2564770455 938401.3845957135 965468.7371602394 1199242.8533319978 1222344.7952098933 1344130.3011829252 1736586.8537179239 1184575.556096484 1.208039342578421 0.8146506911364895 0.8738895979656102 0.792183647354682 0.8150334794529575 1.0123819009771287 1.0318841959206635 1.1346935991252596 1.4659992305095975 1.0 20.175938790637062 1.9385189262934255 1.6272053823621817 1.2312697272164532 0.8962627194025806 0.3966804296212926 0.1563525507301129 0.3444948590605667 1.6988761048849188 0.10123435656611822 0.04700071959644818 86.79984033187324 -1.9385189262934255 -0.3350070078138726 SREDLS(ph)AQPVQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SREDLSAQPVQTK 13 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.014)REDLS(0.976)AQPVQT(0.01)K;S(0.268)REDLS(0.732)AQPVQTK 187.04 1.9196e-05 1555370000.0 1328790.0 1130960.0 1019140.0 971110.0 815600.0 1241600.0 1247490.0 1226450.0 1803850.0 1263190.0 True False 1321635.942282449 1168603.319920244 1162626.0534763192 1094052.4264298475 919461.8255600596 1155771.1144120232 1187144.1428254144 1317973.9267869089 1359315.3378516298 1182572.1327286307 1.1175943569995572 0.9881877710274167 0.9831333085735002 0.9251464635019467 0.7775101409150591 0.9773366735314761 1.0038661574801653 1.114497704039293 1.149456595696355 1.0 20.173496754881235 1.9358447829245518 3.0112286518912557 1.0986701699435648 0.9545038940018653 0.2965052501899459 0.08602684094413315 0.30922309455176983 5.11083574256511 0.046327047122880036 0.02546020340442535 86.26701738914817 -1.9358447829245518 -0.1441662759416995 SREDMIDIK ddPTM_BT-474_Trastuzumab_2h_R1 5 SREDMIDIK 9 1 P20340-2;P20340;P20340-4;P20340-3;F5H3K7 P20340-2 RAB6A Ras-related protein Rab-6A 0 ;;;; 125.54 0.00045482 3493300000.0 4040200.0 4277780.0 4166940.0 3471980.0 4059960.0 5277590.0 4534050.0 4182800.0 6250570.0 4836410.0 False True 4018448.012108415 4420163.321327386 4753608.932308232 3911532.31200987 4576971.840731753 4912762.625410549 4314720.679746991 4494941.775828027 4710200.776846884 4527746.173141081 0.8875161854138689 0.9762392042972984 1.0498841477702496 0.8639027371307526 1.0108720024728157 1.085034902034353 0.9529510963627394 0.9927548064625062 1.0402970035705925 1.0 22.110361651828132 3.0846497651288 24.900693998988885 1.0110446309049803 0.9520947687657122 0.25835075560330323 0.0567940547960541 39.60538007147416 11644.957897808892 0.016397674187102602 0.01959896908031661 1215.2056081750325 -3.0846497651288 -0.05894986213926812 SREDMTEAEQIIFDHFSDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SREDMTEAEQIIFDHFSDPK 20 1 Q14997;Q14997-3;Q14997-2 Q14997 PSME4 Proteasome activator complex subunit 4 0 152.18 4.0500999999999987e-08 45394000.0 21099.0 28437.0 34705.0 27298.0 31608.0 33892.0 35881.0 32536.0 39718.0 38952.0 False True 20985.40532831926 29383.508354470487 39591.16233873237 30753.924001073014 35633.09144470617 31549.12581318639 34145.2989512691 34964.00153446035 29930.03109393297 36466.05001151502 0.5754778848186908 0.805777108987454 1.08569922780862 0.8433576982251089 0.9771579711390233 0.8651643323920196 0.9363585839564995 0.9588096742975902 0.8207642748387021 1.0 15.15426631551565 4.613867212698733 3.442483267107296 0.9323653651915531 0.5699313332178624 0.6754872773923113 0.07608394285533694 0.1331974525583371 2.5537598931505254 0.016921970129987297 0.10074051564257136 41102.402962416694 -4.613867212698733 -0.36243403197369073 SREDVSNFDPDFIKEEPVLT(ph)PIDEGHLPMINQDEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SREDVSNFDPDFIKEEPVLTPIDEGHLPMINQDEFR 36 2 P24723-2;P24723 P24723-2 PRKCH Protein kinase C eta type 1 SREDVSNFDPDFIKEEPVLT(1)PIDEGHLPMINQDEFR;SREDVSNFDPDFIKEEPVLT(1)PIDEGHLPMINQDEFR 145.37 2.0093e-11 147201000.0 82858.0 64598.0 75347.0 59525.0 75011.0 100942.0 96474.0 81360.0 117728.0 103831.0 True False 82411.90173438915 66748.10537968439 85955.2026721357 67060.85889676436 84563.2062249701 93964.1171319091 91807.18405353065 87431.4963377088 88715.51187437792 97204.41668580852 0.8478205470927019 0.6866777010290867 0.8842726040933573 0.6898951836059419 0.8699523036931717 0.9666650995461146 0.9444754382949161 0.8994601204213951 0.9126695565812705 1.0 16.5687342467339 3.0201919710568728 7.366319368629996 0.9337716727195906 0.7781118734041648 0.6098513294434158 0.06284156225730061 0.10882691837780387 26.235958545228993 0.01689683432173086 0.019915442036392277 1047.5915122768365 -3.0201919710568728 -0.15565979931542584 SREEENEHHGPS(ph)MPALIAPEDSPHCDLFPGASYLVTQIPGTQTESR ddPTM_BT-474_Trastuzumab_2h_R1 1 SREEENEHHGPSMPALIAPEDSPHCDLFPGASYLVTQIPGTQTESR 46 1 A0A2R8YF49;A0A5F9ZH52;A5YM69 A0A2R8YF49;A0A5F9ZH52;A5YM69 ARHGEF35 Rho guanine nucleotide exchange factor 35 1 S(0.243)REEENEHHGPS(0.695)MPALIAPEDS(0.034)PHCDLFPGAS(0.013)Y(0.013)LVT(0.002)QIPGTQTESR 43.441 0.025989 65594000.0 20430.0 18187.0 13571.0 17548.0 18275.0 21802.0 14637.0 10240.0 24994.0 16149.0 True False 20320.007149986388 18792.34330072633 15481.6788387534 19769.57500076302 20602.212925588632 20294.879056387654 13928.95239123006 11004.160797666398 18834.56360244123 15118.35699414551 1.3440618684857875 1.2430149194124434 1.024031833931993 1.3076536695368859 1.3627283000108221 1.342399776923294 0.9213271254689884 0.7278675058359643 1.245807570871279 1.0 13.88401374098711 2.230870053943102 24.990169315801392 0.9260955541359885 1.2640499961576845 0.46869230921621907 0.1514018655574089 138.4722575158097 449956.07006942213 0.05767726271746587 0.043402914066282335 170.16492785802888 -2.230870053943102 0.337954442021696 SRENLS(ph)AVMLYNPGLEFER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRENLSAVMLYNPGLEFER 19 1 Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2;A0A1B0GTU3 Q96L93-5 KIF16B Kinesin-like protein KIF16B 1 S(0.219)RENLS(0.781)AVMLYNPGLEFER 163.71 1.5237e-11 398250000.0 117330.0 93767.0 91067.0 91150.0 90379.0 109860.0 97518.0 105670.0 124570.0 107760.0 True False 116698.30831658862 96887.9779116516 103888.44203144609 102689.58065417985 101888.22993169758 102265.63678262307 92800.68178506347 113555.6319813877 93871.3926524808 100882.66454202234 1.156772661054946 0.9604026455040077 1.0297947868751196 1.0179110664885824 1.0099676727834284 1.0137087203919426 0.9198872988372314 1.125620863573508 0.930500726548306 1.0 16.622318760596187 4.750637289957216 24.197047968065522 1.0084896095100455 1.1567728042501053 0.4109371261898417 0.055325308165202966 1183.6846840769988 2371583.3706828696 0.012534296756651646 0.20230133336180817 56316.71186659863 -4.750637289957216 0.1482831947400598 SRGEVEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGEVEEK 8 1 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 0 100.25 0.005691300000000001 150270000.0 259100.0 227140.0 224600.0 211190.0 217210.0 219410.0 291310.0 251110.0 348520.0 287550.0 False True 257705.03438871622 234700.2175909702 256221.72774180354 237926.63234620137 244870.40599546427 204242.70313558434 277218.222387732 269849.10331074294 262631.91592873586 269198.31281605957 0.9573055332066788 0.8718487687972192 0.9517954442637135 0.883834039884099 0.9096283087137389 0.7587072184777818 1.0297918270281001 1.0024175132744166 0.9756075852830086 1.0 18.038309842410555 2.1739985039779866 24.999995896832434 1.0031711156886756 0.8916530457383158 0.5238397411150356 0.052780400641288666 47.97088922326117 18574.837444393266 0.019209263495888026 0.014186984862586972 149.27892673320994 -2.1739985039779866 -0.11151806995035973 SRGPATVEDLPSAFEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGPATVEDLPSAFEEK 17 1 O14908;O14908-2;K7EM11 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 180.62 7.7467e-10 186510000.0 217260.0 245040.0 192660.0 165690.0 206270.0 265470.0 241390.0 240310.0 402660.0 280190.0 False True 216090.2962998555 253196.00827019187 219784.85336926047 186666.3370114216 232537.26184192454 247118.68374916198 229713.0435006507 258243.1524694541 303429.8383675673 262308.0343172722 0.8238035745351419 0.9652621160812065 0.8378883778429058 0.7116302689594368 0.8865045344385498 0.9420934604323324 0.8757377336860505 0.9845034031900775 1.1567691365509476 1.0 18.000902471487557 1.5786837549603512 2.8546195314084635 1.0792750699505174 0.8631458531282316 0.5763774749414071 0.0746727885376017 0.1621287902381332 3.0135905338368003 0.0528287770676951 0.020472640488614004 37.903887550640626 -1.5786837549603512 -0.2161292168222858 SRGSPS(ph)SYNSSSSSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGSPSSYNSSSSSPR 16 1 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 S(0.178)RGS(0.293)PS(0.529)SYNSSSSSPR 192.94 2.7549e-10 624160000.0 131010.0 138390.0 120520.0 139050.0 133260.0 146920.0 130830.0 121690.0 130710.0 159020.0 True False 130304.65671657934 142996.22749147826 137488.16842138075 156653.71574288214 150229.87110609797 136763.7662124794 124501.25308086553 130771.12572929921 98498.27192426549 148871.20745612844 0.8752844753743227 0.9605364928179178 0.9235376723998009 1.0522767862217224 1.0091264366910568 0.9186717065674567 0.8363017618269496 0.8784178483125206 0.6616341306514385 1.0 17.183705229854972 2.376125072234397 3.4251854740468497 0.8382136432621566 0.966662304929381 0.287604257945264 0.0886341051239211 0.28878859758294595 6.691702281783705 0.03180259165805529 0.025928554646856696 237.75248901559695 -2.376125072234397 0.12844866166722435 SRGSPSS(ph)YNSSSSSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGSPSSYNSSSSSPR 16 1 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 SRGS(0.002)PS(0.088)S(0.593)YNS(0.044)S(0.127)S(0.127)S(0.018)SPR 188.05 3.2641e-09 105060000.0 104060.0 118720.0 99647.0 100230.0 89251.0 110660.0 134530.0 90738.0 147140.0 136260.0 True False 103499.75252215283 122671.52343224437 113676.43145274936 112919.10772318661 100616.58581787751 103010.33466562055 128022.2699454929 97509.33031822782 110879.31857498609 127563.770141945 0.8113569582255586 0.9616486193199147 0.8911341466801845 0.8851973220730093 0.7887551904895697 0.8075203057341209 1.0035942791831702 0.7643967421919682 0.8692069735129849 1.0 16.96085911656193 -2.523217770089678 2.0790816991215975 2.6666408744159353 0.8638630642576784 0.24114475101767552 0.07195859049940143 2748053.225458539 184934.2909103473 21632115.394553166 0.017065165652263858 0.0029976590134286906 2.523217770089678 -1.8027778101582568 SRGSPSSYNS(ph)SSSSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRGSPSSYNSSSSSPR 16 1 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 S(0.005)RGS(0.061)PS(0.301)S(0.061)YNS(0.494)S(0.013)S(0.013)S(0.02)S(0.032)PR 114.96 0.0014271 27426000.0 21567.0 21640.0 23335.0 18492.0 21160.0 26659.0 23031.0 19238.0 24404.0 25301.0 True False 21450.88566831895 22360.274318343756 26620.365168543995 20833.085303972533 23854.600574853917 24816.126078535846 21916.90254303612 20673.63724858459 18389.961196846267 23686.2685187241 0.9056253690344653 0.9440184426123456 1.1238733170444504 0.8795427311610474 1.0071067359553385 1.0477009520903888 0.925299927496419 0.8728110648683218 0.7763975647877555 1.0 14.531763317108043 1.9769026304980808 4.216973387268772 0.8732595848971738 0.9857791173123808 0.23212140757813193 0.08275352745829305 0.2783134724744033 11.197154354929687 0.03595136215490986 0.022163079639090772 94.82058502334299 -1.9769026304980808 0.11251953241520696 SRIPS(ph)PLQPEMQGTPDDEPSEPEPSPSTLIYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 32 1 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 SRIPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR;SRIPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR;SRIPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR;SRIPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR 313.82 2.5302999999999994e-104 1711720000.0 412495.0 510890.0 436646.0 444614.0 464766.0 509740.0 546060.0 472320.0 601800.0 554660.0 True False 410274.1727525032 527894.664810473 498121.9614049307 500902.0868126993 523951.19521609455 474502.87359889166 519644.99164822657 507566.91679236316 453494.4537068553 519261.1239316829 0.7901114754095886 1.0166265882056018 0.9592899187855753 0.9646439213858824 1.0090322018503906 0.9138039643832842 1.0007392575697505 0.9774791398771107 0.8733456690790504 1.0 18.98610069213971 4.748149911336538 24.904847529523643 0.9687193742343446 0.7901113748596591 0.6107416472530642 0.04268264525069535 791.8095955034693 2056404.714460021 0.009497833595747424 0.12410234016915016 55995.08539959176 -4.748149911336538 -0.17860799937468552 SRKS(ph)PHKDLGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRKSPHKDLGHR 12 3 O94888;C9JAT7 O94888 UBXN7 UBX domain-containing protein 7 1 S(0.127)RKS(0.873)PHKDLGHR 146.78 2.6461e-05 92354000.0 61805.0 56534.0 40641.0 59033.0 54591.0 67705.0 67516.0 28630.0 126820.0 62183.0 True False 61472.24874718101 58415.700014475304 46362.89954209543 66506.5717472102 61542.84026379253 63024.712710426844 64249.99314383334 30766.515980194235 95566.91030093598 58214.427702455316 1.0559624335976816 1.0034574300558055 0.7964159637378 1.1424413907689268 1.057175045649325 1.0826304611729207 1.1036781718825255 0.5285032799334141 1.641636172898514 1.0 15.829089130539238 1.2270150554956798 24.99991923133394 1.3208176683468182 0.9637869961401629 0.27751703355605295 0.2253300264291062 313.2831699737821 678339.2286593174 0.2050245650478973 0.0530209125043474 16.866114933936903 -1.2270150554956798 -0.3570306722066553 SRLDQELK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRLDQELK 8 1 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 RPS9 40S ribosomal protein S9 0 ;;; 106.42 0.0038289 5889810000.0 3513360.0 3716660.0 3490800.0 2928860.0 2349040.0 3285960.0 3785590.0 2904260.0 5986830.0 3580940.0 False True 3494444.4601309914 3840366.781331583 3982274.2974224705 3299653.375697217 2648176.3201490934 3058809.319517821 3602466.549341852 3120990.628733463 4511455.965911952 3352401.3434030237 1.0423705583484166 1.1455569867518385 1.1878870962926122 0.984265616702008 0.7899341543220266 0.9124233664734255 1.0745928605567814 0.9309716555492561 1.3457386224921302 1.0 21.676763445532224 3.7228523553789206 23.21791477313511 0.9905943961721672 1.1273000846298586 0.1282784993937146 0.13944853189337664 552.1072974553642 816053.3556142997 0.037212722433361156 0.05792593841774794 5282.65629787454 -3.7228523553789206 0.1367056884576915 SRLT(ph)PVS(ph)PESSSTEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 2 S(0.129)RLT(0.871)PVS(0.999)PES(0.001)SSTEEK 117.38 0.0008123 558510000.0 539590.0 420470.0 366780.0 409490.0 419700.0 491100.0 443400.0 451800.0 637090.0 466580.0 True False 536684.9073940844 434465.0897705176 418419.435891089 461331.3920140446 473146.3072432035 457151.4129250514 421951.0480475101 485515.6101939142 480087.70606862777 436802.46494076523 1.2286673049495365 0.9946488965657174 0.9579145482794627 1.0561556516779405 1.0832042976391327 1.0465861564839056 0.9659996953193267 1.1115221390972576 1.0990956887885979 1.0 18.73662147205855 1.643505337906801 24.999999999836714 1.0790157995968555 1.0434052745695865 0.011923189005665358 0.07711009376280413 2.3304762738238973 1622.9333531476518 0.034938109924974266 0.019373411970576907 44.00533564917849 -1.643505337906801 -0.03561052502726891 SRLT(ph)PVSPESSSTEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRLTPVSPESSSTEEK 16 1 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 1 S(0.213)RLT(0.787)PVSPESSSTEEK;S(0.069)RLT(0.93)PVS(0.001)PESSSTEEK;S(0.041)RLT(0.958)PVSPESSSTEEK 247.55 4.2818e-20 6768700000.0 4488600.0 3803400.0 3369890.0 3236140.0 3639400.0 4351800.0 4012200.0 4473200.0 6577400.0 4675800.0 True False 4464433.876330345 3929993.86979615 3844341.2203910314 3645834.9921910907 4102856.0175861656 4050970.309035307 3818114.55790758 4807012.898449353 4956487.902644516 4377386.440846219 1.0198857095804634 0.8977945911114074 0.8782275159713472 0.8328793999476758 0.9372843985857958 0.9254312736099648 0.8722361184016181 1.098146796817893 1.1322938857749894 1.0 22.06163832174587 1.7114458490698314 6.641609079378181 1.0854263181822432 0.9063438597114462 0.6493069388505149 0.056205996875103595 0.07392234647472329 7.865702378192377 0.027780543183738286 0.014342070442982066 51.45716425550697 -1.7114458490698314 -0.17908245847079707 SRLTPVS(ph)PESSSTEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 1 S(0.121)RLT(0.121)PVS(0.758)PESSSTEEK 115.42 0.00030709 135150000.0 64253.0 75767.0 51787.0 44660.0 57815.0 73208.0 86050.0 90099.0 180500.0 100600.0 True False 63907.068987179395 78288.85879288136 59078.15945932664 50313.951420907055 65177.39755364743 68147.3032730954 81887.43275707774 96822.64489345162 136018.19357608404 94179.62187200673 0.6785657843692688 0.8312717468676882 0.6272923832675379 0.5342339501987533 0.6920541435410063 0.7235886269081636 0.8694814348306209 1.0280636401899856 1.4442422986252519 1.0 16.523127309826773 1.778598160225365 1.7982271834920747 1.2179300465313052 0.6790445008488543 0.7417275178999977 0.12727238106133532 0.15888873686716132 1.0057468997347252 0.08790301770331604 0.0367093061186292 60.06177465545726 -1.778598160225365 -0.538885545682451 SRNDQVVTDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRNDQVVTDLR 11 1 A0A5F9ZHC6;A0A5F9ZHM8;P04424-3;P04424-2;P04424;F8W943 A0A5F9ZHC6 ASL Argininosuccinate lyase 0 63.473 0.067868 455990000.0 298600.0 371770.0 349640.0 385430.0 318310.0 365690.0 359300.0 341910.0 379360.0 346650.0 False True 296992.37077757856 384144.1397102891 398866.2728746402 434225.3984809712 358844.89172881586 340410.71104166616 341919.2863407092 367425.06038380065 285871.81116356346 324526.500218004 0.915155990583422 1.183706536915279 1.2290715014234515 1.3380275514920226 1.1057491190634914 1.0489458050821483 1.0535943477990901 1.13218815762959 0.8808889596736358 1.0 18.307976765210036 3.0032949945011063 24.93683144108283 1.0456204186367297 1.1784024643605167 0.24228688148933542 0.11582773857977735 150.96107037047247 1142466.3094413078 0.03411207822384962 0.04058715541068094 1007.6158594701361 -3.0032949945011063 0.13278204572378693 SRNS(ph)PLLER ddPTM_BT-474_Trastuzumab_2h_R1 6 SRNSPLLER 9 1 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 S(0.003)RNS(0.997)PLLER;S(0.004)RNS(0.996)PLLER;SRNS(1)PLLER;S(0.019)RNS(0.981)PLLER;S(0.018)RNS(0.982)PLLER;S(0.124)RNS(0.876)PLLER 141.73 6.4209e-05 29473550000.0 1865720.0 2376490.0 2258070.0 2217770.0 2154610.0 2316310.0 2306500.0 2160220.0 2582590.0 2204490.0 True False 1855675.170820977 2455590.0330314557 2575986.6285037156 2498539.4546069163 2428986.812125992 2156188.9417072404 2194925.783314349 2321426.585774894 1946145.2994330113 2063797.560841155 0.899155617794532 1.1898405539497854 1.2481779595929963 1.210651423383101 1.1769501322290519 1.04476765677949 1.0635373473451288 1.124832507713952 0.9429923439970578 1.0 20.976870032190888 2.7340960534127623 24.05276140457107 1.0519875964124539 1.1568331686547904 0.2200590534587683 0.09960258962480087 372.01355084758205 2004211.1663953483 0.032126209881462725 0.03128485478369979 542.1207786227204 -2.7340960534127623 0.10484557224233648 SRNTDEMVELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRNTDEMVELR 11 1 P61978;P61978-2;S4R457;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ; 165.58 1.954e-05 507990000.0 421770.0 873340.0 462960.0 370400.0 546030.0 510140.0 736960.0 630840.0 1514270.0 946230.0 False True 419499.2371830527 902408.593954822 528140.743879543 417292.6020220329 615563.68392663 474875.222540391 701310.429339408 677916.4841406123 1141098.4486784309 885840.791291741 0.4735605328936537 1.0187029123358857 0.5962027816639641 0.4710695264027446 0.6948920054008909 0.536072878116082 0.7916890215867693 0.7652802747456102 1.2881529727418297 1.0 19.75668790656559 1.401489981018735 3.496750758199426 1.1399247550142255 0.6614393680102234 0.5581075498377691 0.1696243621689463 0.16614213905400588 3.42715986221626 0.1256227510845175 0.04227446983421442 25.205190317111466 -1.401489981018735 -0.4784853870040021 SRPALS(ph)PLGDIDFCPPNPGPDGPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRPALSPLGDIDFCPPNPGPDGPR 24 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 S(0.325)RPALS(0.675)PLGDIDFCPPNPGPDGPR;S(0.004)RPALS(0.996)PLGDIDFCPPNPGPDGPR;S(0.001)RPALS(0.999)PLGDIDFCPPNPGPDGPR;S(0.005)RPALS(0.995)PLGDIDFCPPNPGPDGPR 168.61 6.2129999999999995e-12 1978320000.0 449958.0 517418.0 489950.0 528990.0 488120.0 541412.0 509260.0 460460.0 614450.0 522940.0 True False 447535.4761230329 534639.945344214 558930.7012782572 595960.0797614332 550279.188686092 503985.4627867608 484625.1482378783 494821.86336850363 463027.0307081704 489565.521488541 0.914148273273587 1.0920702579679684 1.1416872241713611 1.2173244511774355 1.1240154065853107 1.0294545687252965 0.9899086577101236 1.0107367485030003 0.9457917487741387 1.0 18.901142431713616 2.5569255128766284 3.596449433827596 0.9911493512833067 1.1061553387002399 0.3369633642657255 0.07324833945057765 0.29117618305739074 7.186364803535467 0.026650826650333925 0.024303848133623095 360.51680442172585 -2.5569255128766284 0.11500598741693313 SRPDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRPDSPR 7 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 S(0.004)RPDS(0.996)PR;S(0.001)RPDS(0.999)PR 68.383 0.037911 437014000.0 248809.0 160221.0 134292.0 144395.0 137351.0 115279.0 128145.0 128370.0 219765.0 154546.0 True False 247469.43998927853 165553.8591293603 153199.14631301086 162675.392194847 154841.8357068414 107310.03406757701 121946.13678856172 137949.62124965206 165606.8604501277 144682.74196651275 1.710428186704922 1.1442543656497624 1.0588626136797246 1.1243593395022793 1.0702163478673912 0.7416920125305216 0.8428519886413717 0.9534628620846909 1.1446206935202947 1.0 17.142533319152243 7.962124414207395 0.819210645009503 0.9543163916107079 199.99855039837138 0.7785245973475117 0.11540537549137987 242.5407204671908 0.8224955853625364 0.04026733593501614 89675.7493591157 91648300.13444793 -7.962124414207395 199.04423400676066 SRPELLEYYIK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPELLEYYIK 11 1 Q14258 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 107.39 0.0020102 314150000.0 477380.0 489610.0 483710.0 446960.0 397610.0 493940.0 535980.0 422540.0 681000.0 523700.0 False True 474809.8391219046 505906.37287450436 551812.1635173089 503545.09017215885 448243.2766808916 459795.0904096921 510052.59975756606 454072.08041464514 513176.6749324825 490277.0176378722 0.9684521648791786 1.0318786210129398 1.1255109737264652 1.0270623995352903 0.9142653246128141 0.9378271341882588 1.0403355274839754 0.9261541211993569 1.0467075887116626 1.0 18.903237609470597 3.4591916949724664 24.38531096276986 0.9729546658846925 1.0468314421020988 0.22609046325654836 0.05489732610456247 226.59992405052316 308188.58795456187 0.015031195776935234 0.020356661221521574 2878.668761432339 -3.4591916949724664 0.07387677621740629 SRPFTVAASFQSTSVKS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRPFTVAASFQSTSVKSPK 19 2 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 SRPFTVAASFQSTSVKS(1)PK;SRPFTVAASFQSTSVKS(1)PK 203.25 2.6846000000000003e-16 2893800000.0 1327440.0 1008860.0 905430.0 849960.0 818880.0 1259210.0 1229830.0 836450.0 1693210.0 944040.0 True False 1320293.2105324473 1042439.2952312528 1032906.6738613572 957564.8488516387 923159.5141179773 1172163.7765615021 1170338.4244931657 898870.1464070362 1275941.083351585 883790.5589666928 1.4938982965331777 1.179509426362337 1.1687233625453155 1.0834748562727363 1.0445455710652916 1.3262913533857712 1.3242259861448373 1.0170623993290606 1.4437143171606015 1.0 19.753344994121136 4.738563321464434 6.631770681813932 1.1736036690939102 1.4998106750869484 0.3137076655961576 0.14085695940469306 0.13541043316184678 38.49374693296102 0.032083457329529046 0.1985226578100743 54772.595526060984 -4.738563321464434 0.3262070059930382 SRPLATGPSSQSHQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 0 149.22 5.149e-07 40570000.0 35786.0 39468.0 39729.0 43001.0 41262.0 50293.0 44869.0 51026.0 56280.0 51443.0 False True 35593.33215219838 40781.66852109019 45322.4978693415 48444.92219100815 46516.47112096517 46816.36328698763 42698.5150537748 54833.819224777915 42410.54811336291 48159.86369743187 0.7390662975255969 0.8467978393233052 0.9410844298497948 1.0059190054059783 0.9658763034133269 0.9721033178398326 0.8865995826323674 1.1385792029910153 0.8806201857175201 1.0 15.555543688521704 4.4795857128175385 1.5155127845519685 0.988084874779038 0.7034407854391014 0.5595683876030468 0.06783025333200048 0.48051324435987325 1.4838526693271243 0.01845866421398695 0.17764571718312502 30170.722669749757 -4.4795857128175385 -0.28464408933993657 SRPNS(ph)GDEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPNSGDEKR 10 2 K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26;K7EPU6 K7EMM8 GLYR1 Putative oxidoreductase GLYR1 1 S(0.013)RPNS(0.987)GDEKR 68.171 0.047864 44214000.0 51910.0 56696.0 53963.0 54672.0 58103.0 53716.0 54050.0 48905.0 61595.0 58254.0 True False 51630.52232774319 58583.09208654429 61560.52134519562 61593.46959435352 65502.07264653765 50002.73935386292 51435.39500894891 52554.53943455817 46415.73758071407 54536.1798462414 0.9467205527286585 1.0742060087764251 1.1288014950581167 1.1294056490206932 1.2010755581196435 0.9168727896754044 0.943142610171178 0.9636637473092131 0.8510999067330716 1.0 15.734926025348885 2.718725549616928 24.848089890680075 0.9360116781330821 1.0985022770633686 0.5720249822142227 0.06964814965982148 564.0256071808643 706573.7567533153 0.022958281460087344 0.02167233225310161 523.2696542481125 -2.718725549616928 0.1624905989302865 SRPT(ph)S(ph)EGSDIESTEPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 S(0.049)RPT(0.773)S(0.802)EGS(0.376)DIESTEPQK 90.464 0.022832 0.0 97617.0 92900.0 77729.0 96864.0 89420.0 105750.0 104620.0 93124.0 140500.0 99756.0 True False 97091.44091826818 95992.12034076404 88672.56756742048 109126.97246831036 100807.1069661359 98439.75140872368 99559.13091278885 100073.38575409031 105875.65760354459 93389.48667459165 1.0396399463740036 1.0278685937662455 0.9494919687950861 1.1685145336386176 1.0794267166002354 1.0540774439817757 1.0660635844342399 1.0715701447507489 1.1336999631710154 1.0 16.510972527170253 3.7524501349034547 24.996752065233878 1.0819839288730277 1.0078870198153043 0.3479378945086178 0.047799764413641824 892.4273055264631 1606082.250210716 0.011809416516832661 0.02116289739931732 5655.228208069094 -3.7524501349034547 -0.07409690905772348 SRPTS(ph)EGS(ph)DIESTEPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 S(0.011)RPT(0.508)S(0.577)EGS(0.903)DIESTEPQK;S(0.274)RPT(0.281)S(0.445)EGS(0.999)DIES(0.001)TEPQK;S(0.002)RPT(0.26)S(0.733)EGS(0.643)DIES(0.323)T(0.038)EPQK;SRPT(0.072)S(0.928)EGS(0.798)DIES(0.173)T(0.029)EPQK 250.64 2.6089e-20 5032220000.0 7583700.0 6734600.0 5454690.0 5963460.0 6347370.0 8042800.0 7261100.0 7232700.0 9338300.0 7395100.0 True False 7542870.201828273 6958757.089848323 6222662.938984589 6718433.424552667 7155669.945690474 7486820.1667147335 6909852.85290433 7772440.80090643 7037001.091809117 6923138.386736357 1.089516023004715 1.005144878106179 0.8988211113772089 0.9704317679716078 1.0335875936554455 1.0814199786990106 0.9980809954835687 1.1226759262529264 1.0164466891620862 1.0 22.722994755823862 3.0953934969860475 4.918628801187292 1.0536881003910294 0.9858162068486778 0.1517178481847652 0.05644667418150994 0.31406369537228257 12.752553875965981 0.01688293663651018 0.020337279938777268 1245.642728040179 -3.0953934969860475 -0.06787189354235168 SRPTS(ph)EGSDIES(ph)TEPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 S(0.005)RPT(0.167)S(0.828)EGS(0.128)DIES(0.863)T(0.009)EPQK;S(0.008)RPT(0.081)S(0.911)EGS(0.22)DIES(0.639)T(0.141)EPQK 275.84 1.1748999999999998e-34 2392180000.0 3451400.0 2999600.0 2473530.0 2653470.0 2807190.0 3680700.0 3342500.0 3407600.0 4417400.0 3464100.0 True False 3432818.0458865864 3099439.8727035066 2821781.5236918195 2989399.029933594 3164669.006981292 3426261.87243583 3180810.505410022 3661892.415442193 3328790.9601273867 3243018.172234783 1.0585256892103725 0.9557269518991515 0.8701096860482016 0.9217953372964239 0.9758406641306299 1.0565040621017467 0.9808179715558322 1.12916185508722 1.0264484450401636 1.0 21.6289056772744 2.857938653902437 3.4452722856608053 1.048865456154398 0.9460431025291783 0.3324668945451634 0.05767806236278775 0.25924705734065545 5.691409976450198 0.01900095705234 0.02032471249432133 721.0056266210725 -2.857938653902437 -0.10282235362521963 SRPTS(ph)EGSDIESTEPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 S(0.005)RPT(0.246)S(0.445)EGS(0.303)DIESTEPQK 221.92 2.1370000000000002e-15 1070100000.0 1380700.0 1216500.0 1157300.0 1099600.0 1103400.0 1415700.0 1276200.0 1339200.0 1701600.0 1461500.0 True False 1373266.4646101908 1256990.4671102208 1320237.7805680719 1238809.2472554732 1243911.449635814 1317835.9911993383 1214465.330442563 1439137.904319811 1282263.4802718256 1368225.8187468974 1.003684074510383 0.9187010286514309 0.9649268143304182 0.9054128567680797 0.9091419213058427 0.9631714101158323 0.8876205329576682 1.051827764540987 0.9371724043668455 1.0 20.38387492871466 1.7414541351653379 24.99999999999979 0.99885756934334 0.9353584903593081 0.30801091519572377 0.041314492440908145 0.5225473674580826 4541.5314296688275 0.017719252446683306 0.009826221737107925 55.138396892257184 -1.7414541351653379 -0.06349907898403195 SRPTSEGS(ph)DIESTEPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 SRPT(0.003)S(0.004)EGS(0.993)DIESTEPQK;SRPTS(0.001)EGS(0.998)DIESTEPQK 234.14 2.411e-20 4710000000.0 3271400.0 2799800.0 2589700.0 2440600.0 2498400.0 3195400.0 3095100.0 3046600.0 3863700.0 3178500.0 True False 3253787.1458867094 2892989.6504851603 2954307.249924082 2749579.709759646 2816556.430823017 2974509.5191625142 2945378.188569802 3273952.7623213334 2911542.9059275086 2975645.408749242 1.0934727425249164 0.972222577992307 0.9928290653306944 0.9240280114274038 0.9465363119347291 0.9996182711880294 0.9898283511568798 1.1002496307842942 0.9784576137219665 1.0 21.504771188001936 1.9630535444179738 24.738758485576266 1.0392907147153165 0.9837993004083881 0.08301980981893842 0.05139612250234644 824.9107176581514 552345.7378367527 0.02106253953842204 0.01358283128005291 91.84458252206596 -1.9630535444179738 -0.05549141430692839 SRPTSEGSDIES(ph)TEPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 SRPTSEGS(0.417)DIES(0.539)T(0.045)EPQK 342.3 2.797699999999999e-72 1685200000.0 966120.0 922310.0 720540.0 740100.0 724250.0 969810.0 995890.0 940090.0 1109800.0 914520.0 True False 960918.5172660223 953008.5308018307 821985.7689540471 833796.5841158375 816478.9445339288 902769.3173871798 947714.996030752 1010244.2894802935 836304.660558104 856154.5506400377 1.1223657183713687 1.1131267480729823 0.9600904046349494 0.9738855951796482 0.9536583598411659 1.0544466728726656 1.106943828450443 1.17997888199632 0.976815062108711 1.0 19.70751172587144 2.470513525751579 8.917006686352337 1.0911144553533136 1.0212340737382963 0.021914686961776564 0.07663756016771975 0.2689390404967237 217.26494360852513 0.027762040828645265 0.023823825410254608 295.4700908824573 -2.470513525751579 -0.0698803816150173 SRQPS(ph)PLLLLPPPAGLTSDPGPSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 S(0.209)RQPS(0.791)PLLLLPPPAGLTSDPGPSVR;S(0.076)RQPS(0.924)PLLLLPPPAGLTSDPGPSVR;S(0.06)RQPS(0.94)PLLLLPPPAGLTSDPGPSVR;S(0.176)RQPS(0.824)PLLLLPPPAGLTSDPGPSVR;S(0.047)RQPS(0.953)PLLLLPPPAGLTSDPGPSVR;S(0.035)RQPS(0.965)PLLLLPPPAGLTSDPGPSVR 119.89 0.000229 3011330000.0 673142.0 811627.0 755501.0 792150.0 822123.0 818307.0 791817.0 770082.0 945359.0 835615.0 True False 669517.8782651067 838641.5140561172 861868.9738675882 892436.1087790306 926815.4909452099 761739.36317748 753513.7866753165 827549.4292371612 712387.9416115959 782285.335294006 0.8558486885267791 1.0720404387242295 1.1017322388430972 1.140806389325484 1.1847537581627874 0.9737359615608743 0.9632211581623522 1.0578613606838783 0.9106497456504913 1.0 19.5773353949239 SRS(ph)APPNLWAAQR ddPTM_BT-474_Trastuzumab_2h_R1 5 SRSAPPNLWAAQR 13 1 Q92934;F5H1R6;F5H3B1 Q92934;F5H1R6 BAD Bcl2-associated agonist of cell death 1 S(0.058)RS(0.942)APPNLWAAQR;S(0.027)RS(0.973)APPNLWAAQR;S(0.005)RS(0.995)APPNLWAAQR;S(0.012)RS(0.988)APPNLWAAQR;S(0.013)RS(0.987)APPNLWAAQR 241.68 4.0726e-17 4127930000.0 912270.0 1114700.0 1044800.0 929460.0 782820.0 997500.0 1044000.0 929100.0 1587100.0 1162990.0 True False 907358.4396827264 1151802.1156496196 1191898.758435603 1047129.5407003191 882507.4868623415 928545.1728624292 993497.7315327032 998434.1598742056 1195980.4710504303 1088766.9825141672 0.8333816640797331 1.0578958897062551 1.0947234601873077 0.961757251567549 0.8105568051158809 0.852841046592214 0.9124980344632885 0.9170319966616124 1.0984723914833339 1.0 20.054263791384034 4.785789074093995 22.048692799049903 0.9558392867401962 0.8333794077696203 0.14652236625552917 0.0933455237691732 18559.08406130104 8663348.365547188 0.02402138506784975 12.084369745743466 61064.537777402176 -4.785789074093995 -0.12245987897057597 SRS(ph)AS(ph)PSTQQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSASPSTQQEK 12 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 2 S(0.521)RS(0.624)AS(0.843)PS(0.012)TQQEK 80.60300000000002 0.011321 73377000.0 76728.0 70196.0 66640.0 66124.0 75804.0 88063.0 86415.0 82214.0 108200.0 92309.0 True False 76314.90497328213 72532.4314256219 76022.33275473623 74495.29162015351 85457.19007449078 81975.41208800407 82234.77631264231 88349.22615423294 81535.55980571907 86417.76059028904 0.8830928324455773 0.8393232008117152 0.8797072758592062 0.8620368210342715 0.9888845706109839 0.9485944964097558 0.9515957802068203 1.022350331121181 0.9435046597919063 1.0 16.399040225298375 3.2412624058281834 24.99985395867511 0.9771206207591857 0.8651078990184851 0.8161251618994291 0.025522065820940548 28.053116295154787 259575.14848852748 0.007212651146403031 0.009341905576768103 1742.8596115741311 -3.2412624058281834 -0.11201272174070065 SRS(ph)ASPS(ph)TQQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSASPSTQQEK 12 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 2 S(0.017)RS(0.983)AS(0.001)PS(0.831)T(0.169)QQEK;S(0.149)RS(0.849)AS(0.098)PS(0.803)T(0.101)QQEK 170.77 0.00045501 950850000.0 2345560.0 2006810.0 1729100.0 1755390.0 1918340.0 2281720.0 2502420.0 2351050.0 3257140.0 2645220.0 True False 2332931.765576214 2073605.457707737 1972542.2503933755 1977622.1940158075 2162629.2281080014 2123990.0669911397 2381368.3844272676 2526497.2893899987 2454461.4904399235 2476399.794913218 0.9420658854714404 0.837346805619649 0.7965362678696638 0.798587610158121 0.8732956740467619 0.8576927163998461 0.9616251743029721 1.0202299703705704 0.9911410489863721 1.0 21.239812814238928 2.1702264114426217 2.6297209133047867 1.0053106174673725 0.8440169439325398 0.7640061008064476 0.039205026289724894 0.1305900232847834 1.8236667444434613 0.018196974704273554 0.01217546162538805 147.98796951654072 -2.1702264114426217 -0.1612936735348327 SRS(ph)DIDVNAAAGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 S(0.002)RS(0.998)DIDVNAAAGAK;S(0.014)RS(0.986)DIDVNAAAGAK;S(0.03)RS(0.97)DIDVNAAAGAK;S(0.155)RS(0.845)DIDVNAAAGAK 170.79 8.2017e-06 1312240000.0 2147690.0 1463550.0 1362460.0 1468760.0 1316410.0 1662170.0 1536950.0 1561200.0 2443000.0 1852160.0 True False 2136127.0756707895 1512263.3770153415 1554282.5252853844 1654704.8654046454 1484047.0105266273 1547268.1002273106 1462601.8567808322 1677704.6716129687 1840955.3845228427 1733953.5630860475 1.2319401863732518 0.8721475645079287 0.896380709595885 0.95429595153612 0.8558747143639517 0.892335373430371 0.843506935778447 0.9675603241802113 1.061709738781214 1.0 20.72563383166561 4.744104571648331 24.829255304712305 0.9210141716285929 1.2319403328825156 0.6576046646381362 0.06586044240841371 328.2150487871935 1469901.097914638 0.015714123884745895 0.13695200819923184 55475.9274655172 -4.744104571648331 0.3109261612539227 SRS(ph)DIDVNAAASAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSDIDVNAAASAK 14 1 Q7Z460;Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(0.013)RS(0.986)DIDVNAAAS(0.001)AK 211.06 1.1478e-08 783660000.0 492350.0 337400.0 315510.0 333690.0 293990.0 394820.0 392370.0 386180.0 566440.0 454150.0 True False 489699.2423052269 348630.1550373933 359931.06553791836 375935.11978599336 331427.8838847494 367527.02270630974 373389.56410104106 414998.7125823062 426848.45190713054 425165.7581826236 1.1517842932564761 0.8199864366491256 0.8465664475814051 0.8842083647397494 0.7795262847634815 0.8644323199434231 0.8782211570778876 0.976086866346489 1.003957735758636 1.0 18.69766588483037 1.6651656759573616 3.5904558982381594 0.9989817343650798 0.8791862411139534 0.20080056598339824 0.09442331400197554 0.28219829233192595 8.557474512440423 0.05410984282308339 0.0244877158182654 46.255744554294424 -1.6651656759573616 -0.11979549325112637 SRS(ph)ES(ph)ETSTMAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSESETSTMAAK 13 1 Q96B23-2;Q96B23;A0A087WVF1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 2 S(0.053)RS(0.947)ES(0.979)ET(0.021)STMAAK 175.17 0.0002239 447330000.0 1217700.0 944810.0 759100.0 941350.0 984370.0 1240800.0 1125300.0 1155000.0 1632800.0 1145000.0 True False 1211144.0384991895 976257.4297002931 865974.6817845183 1060524.813481209 1109723.6846818978 1155026.4165290256 1070864.9399365443 1241191.9649711614 1230418.3183990559 1071925.1197161805 1.129877466459477 0.910751517754134 0.8078686335980326 0.989364643084407 1.035262318487065 1.077525281649196 0.9990109572393294 1.157909206661561 1.147858461162698 1.0 20.031772697892915 3.1551848653542436 2.3191458718260245 1.08493880058386 0.941577592824627 0.2753467383320942 0.08903305937402084 0.34820951386834104 3.829431970732238 0.028620890863199643 0.03679310759610346 1429.502322714584 -3.1551848653542436 -0.143361207759233 SRS(ph)ESETSTMAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSESETSTMAAK 13 1 Q96B23-2;Q96B23;A0A087WVF1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 S(0.41)RS(0.586)ES(0.004)ETSTMAAK;S(0.366)RS(0.632)ES(0.002)ETSTMAAK 192.21 1.7619e-06 5762300000.0 2313100.0 2093210.0 1947760.0 1943150.0 1942030.0 2205460.0 2521500.0 2338800.0 2949100.0 2416600.0 True False 2300646.5266095707 2162881.229477835 2221987.6777665853 2189152.590764344 2189336.009186366 2053001.7412944087 2399525.4119345914 2513333.1321857623 2222333.820915396 2262370.5190446484 1.0169185406381116 0.9560243166495885 0.9821502088459338 0.9676366326099305 0.9677177061655121 0.9074560174879526 1.060624416617602 1.110929050316254 0.9823032090489938 1.0 21.10940379494427 2.2140853397963234 24.98132218640868 1.054943253333825 0.9666926849700275 0.38987705396970296 0.042247295406162844 185.8485655661531 189689.9040357443 0.01565344277636289 0.011566342651154039 163.71381909850706 -2.2140853397963234 -0.08825056836379752 SRS(ph)FDYNYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSFDYNYR 9 1 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.02)RS(0.98)FDYNYR;S(0.017)RS(0.983)FDYNYR;S(0.012)RS(0.988)FDYNYR;S(0.033)RS(0.967)FDYNYR 166.7 3.6664e-05 6449340000.0 2079000.0 3514750.0 3151380.0 3047790.0 3842030.0 3175910.0 4017600.0 3060400.0 2899950.0 3224030.0 True False 2067806.894998615 3631736.3290387546 3595066.911713996 3433639.9015030516 4331289.74700406 2956366.8169879895 3823253.339277578 3288782.5883963164 2185296.1798391407 3018269.6451690476 0.6850968064792637 1.2032511193463458 1.1911019671380763 1.1376186706839906 1.4350241218297355 0.9794906236160384 1.266703704023583 1.089625174364472 0.7240228464467582 1.0 21.525290267955764 1.3756439349585055 6.679995212070724 0.8662056713534491 1.1425235864777983 0.22230859107164702 0.19525809160135382 0.2845051228475111 15.525911488665836 0.12572220905788292 0.04571357269140756 23.748923850665516 -1.3756439349585055 0.2763179151243492 SRS(ph)GEGEVSGLMR ddPTM_BT-474_Trastuzumab_2h_R1 9 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 S(0.405)RS(0.595)GEGEVSGLMR;S(0.037)RS(0.963)GEGEVSGLMR;S(0.176)RS(0.824)GEGEVSGLMR;S(0.2)RS(0.8)GEGEVSGLMR;S(0.258)RS(0.742)GEGEVSGLMR;S(0.245)RS(0.755)GEGEVSGLMR;S(0.197)RS(0.803)GEGEVSGLMR;S(0.024)RS(0.744)GEGEVS(0.232)GLMR;S(0.005)RS(0.867)GEGEVS(0.128)GLMR 223.71 9.2826e-12 32304090000.0 5596771.0 7113126.0 6413548.0 6906899.0 6798308.0 6481421.0 7017861.0 5587414.0 7920600.0 6425763.0 True False 5566638.606795719 7349882.098934532 7316519.810841448 7781311.7052196935 7664032.2270715535 6033375.621893918 6678380.252597534 6004375.2049934035 5968674.260602389 6015665.303967517 0.9253571010881122 1.2217903968305979 1.216244495187586 1.2935080846482065 1.2740124059124247 1.0029440331254336 1.1101648637587826 0.9981232169006033 0.9921885542179124 1.0 22.520292870758162 2.7267860645640805 24.814440014546044 1.0261565108645367 1.1957933574013058 0.4039950011532777 0.10005815005034091 691.50607183377 1457321.6030056379 0.032730482189561046 0.03109653966672397 533.0722369924662 -2.7267860645640805 0.16963684653676903 SRS(ph)HDSASSSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSHDSASSSLSSK 14 1 Q4ZG55;Q4ZG55-4 Q4ZG55 GREB1 Protein GREB1 1 S(0.087)RS(0.895)HDS(0.019)ASSSLSSK 153.17 3.9159e-06 392920000.0 41560.0 64803.0 81011.0 73773.0 82894.0 91325.0 89418.0 75447.0 82448.0 95240.0 True False 41336.245577750065 66959.92868075926 92416.64463976497 83112.65423588379 93450.05954876849 85011.91770592613 85092.50973006824 81077.2382521032 62129.79514659819 89161.70166093367 0.4636098774218617 0.7509942882808152 1.036506066149447 0.9321564381077725 1.0480964114406732 0.95345777528127 0.9543616613965057 0.9093280718264635 0.6968215499393104 1.0 16.44413653040422 4.5884867042272885 2.892159894003711 0.9405489060127443 0.44684864514632 0.7109584409528582 0.0938823716824949 0.1622558854086167 2.210432666075548 0.023181142235523772 0.15485712690636022 38769.18792782635 -4.5884867042272885 -0.4937002608664243 SRS(ph)HS(ph)PMSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSHSPMSNR 10 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 S(0.404)RS(0.597)HS(0.753)PMS(0.246)NR 56.527 0.070285 36911000.0 30019.0 49763.0 41544.0 37618.0 47032.0 44703.0 45883.0 31623.0 42619.0 36140.0 True False 29857.381039424436 51419.331372631255 47393.0340930787 42380.434942939544 53021.24641949572 41612.786829543045 43663.463999918626 33982.8688383403 32116.11851534138 33833.514258989315 0.8824794495443685 1.5197750661969593 1.4007718420940183 1.2526169944548216 1.5671220557707324 1.229928008985553 1.2905388327586327 1.004414397458322 0.9492398061135007 1.0 15.046165415998484 1.7502577106947688 2.730509280334556 0.9669776637679465 1.3294654735565365 0.40566532086922746 0.1775185790359643 0.22541396350323786 3.449306297289463 0.10170695991902651 0.046825469904349486 56.26751180115538 -1.7502577106947688 0.3624878097885901 SRS(ph)HT(ph)SEGAHLDITPNSGAAGNSAGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 S(0.45)RS(0.473)HT(0.492)S(0.47)EGAHLDIT(0.114)PNSGAAGNSAGPK 108.52 0.025286000000000003 991810000.0 126380.0 125240.0 142080.0 133810.0 156880.0 337230.0 255500.0 129740.0 255870.0 204620.0 True False 125699.58412213811 129408.53769082142 162083.6290185015 150750.33228015152 176857.7380993896 313918.0838540318 243140.48889521667 139421.85760637114 192814.2669823411 191560.97641600418 0.6561857559608701 0.6755474946514725 0.8461202905257276 0.786957422647366 0.9232451275217755 1.6387371255213814 1.269258976667563 0.7278197272475532 1.0065425150246425 1.0 17.547444168782462 2.9968542933580022 17.18453592214633 1.110623877867064 0.7578876579005761 0.3989953521174374 0.2234796451088602 2.8783129188615955 15732.662847772255 0.07407228606484628 0.08595967574941298 992.7829119453337 -2.9968542933580022 -0.35273621996648796 SRS(ph)IDKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSIDKDR 8 2 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 S(0.03)RS(0.97)IDKDR;S(0.061)RS(0.939)IDKDR 58.674 0.081475 1009350000.0 1943050.0 1778620.0 1364510.0 1433810.0 1520170.0 1635700.0 1966820.0 1714830.0 2814500.0 1848590.0 True False 1932588.834693149 1837820.2915015053 1556621.1474664665 1615330.198988149 1713754.6387464898 1522627.9090236344 1871677.402617963 1842799.3223302998 2120904.187367799 1730611.4035424776 1.1167087138899197 1.061948562074407 0.8994631286261829 0.9333870074365894 0.9902596476820372 0.8798207996936163 1.0815122324900495 1.0648255977963503 1.2255230625583602 1.0 20.72285038350315 2.076215627119761 11.031591490619887 1.0962936800162366 0.9786419040943815 0.300917201107458 0.08437069164892387 0.5887363415466856 81.9156568511429 0.032191691735166644 0.023771946671632675 119.18336062881673 -2.076215627119761 -0.11765177592185516 SRS(ph)ISLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSISLR 7 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 S(0.004)RS(0.994)IS(0.002)LR 115.57 0.0034216 289680000.0 39054.0 90060.0 74837.0 70482.0 119270.0 62551.0 108810.0 79085.0 55446.0 69841.0 True False 38843.73760330729 93057.59265758024 85373.39910513507 79405.01397331781 134458.32753132467 58226.99659921584 103546.44460543449 84986.72428549283 41782.07623833547 65383.687586111635 0.594089122797629 1.4232539658308736 1.3057293379590527 1.2144468583045245 2.0564506606367274 0.8905431729057758 1.5836739778413649 1.2998154038583951 0.6390290572600028 1.0 15.996643125760926 1.2549210868537597 22.738321244693115 0.8195151128825735 1.3224898686638522 0.20212039917139046 0.3757436650741266 100.12554759520326 139161.6564977273 0.23726631336874854 0.08587229052681514 17.985440823611242 -1.2549210868537597 0.5029747557812787 SRS(ph)PAPPADK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPAPPADK 10 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.142)RS(0.858)PAPPADK 88.507 0.012475 0.0 600620.0 510160.0 492600.0 406070.0 399340.0 620560.0 552850.0 474510.0 613910.0 529110.0 True False 597386.3286551556 527140.3672017681 561953.7982440447 457478.4203647052 450193.58192637854 577662.1478411113 526106.5334079074 509920.3457129576 462620.1064725416 495341.7468061388 1.2060084426700943 1.0641953168709486 1.1344769583169734 0.9235612045914392 0.90885451272608 1.1661891039181684 1.0621082046892545 1.0294313955987329 0.9339412828727246 1.0 18.918064689134457 4.767613018899128 1.2125606770276411 1.0170174486572878 1.289322691696665 0.3504108265847604 0.07942683330743192 1.9763305488733043 2.358617415230472 0.023439392152707288 0.6889809321727788 58561.61146725006 -4.767613018899128 0.2723052430393771 SRS(ph)PAPPADKEAFAAEAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPAPPADKEAFAAEAQK 19 2 Q9Y618;Q9Y618-4;Q9Y618-5 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.197)RS(0.803)PAPPADKEAFAAEAQK 172.32 4.4782e-12 307650000.0 480790.0 353580.0 357510.0 327460.0 307080.0 469710.0 464830.0 422750.0 635830.0 419950.0 True False 478201.4800607904 365348.69655637624 407844.30046737345 368916.4024247701 346184.81779424107 437240.053278408 442344.39707696025 454297.75168100325 479138.2161854933 393148.43146271666 1.2163382625784163 0.9292894675862983 1.0373799507478143 0.9383641721581063 0.8805448275763266 1.1121500641669804 1.1251333127063714 1.1555374899774604 1.2187209151588114 1.0 18.584714572941113 2.54661779259144 9.69518623635302 1.1367206936136893 0.9949839350854962 0.27320295010806117 0.09865053915564827 0.5939943221394761 80.30854102836724 0.030860408033640443 0.029056737565650144 352.0608981613474 -2.54661779259144 -0.14173675852819312 SRS(ph)PAYSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SRSPAYSR 8 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 S(0.17)RS(0.83)PAYSR;S(0.142)RS(0.858)PAYSR;S(0.187)RS(0.813)PAYSR;S(0.166)RS(0.834)PAYSR;S(0.193)RS(0.807)PAYSR 60.49 0.055696 1398312000.0 123141.8 199563.0 182055.0 189110.0 186460.0 165998.0 158877.0 146251.0 153519.0 152765.0 True False 122478.8182311403 206205.33381661895 207686.7615495727 213051.30661011487 210204.5757649935 154522.9489772605 151191.51254092078 157164.9922675303 115686.2994992067 143015.40691130346 0.8564029629835636 1.4418399966131283 1.4521985150759154 1.4897087748192535 1.4698037106964286 1.0804636529342178 1.0571694043753486 1.0989374897559272 0.8089079491341379 1.0 17.12581104995249 2.616492978297182 4.8823101630565 1.0186235827574932 1.360890779242863 0.4415706531842951 0.18737989320345752 0.22158392715626102 7.921161066701734 0.06222343529903541 0.05834675753594605 413.5166285284906 -2.616492978297182 0.34226719648536985 SRS(ph)PFSTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPFSTTR 9 1 Q8NG27-3;Q8NG27;K7EPI8;Q8NG27-2 Q8NG27-3 PJA1 E3 ubiquitin-protein ligase Praja-1 1 S(0.001)RS(0.993)PFS(0.004)T(0.002)TR 91.313 0.010918 0.0 112600.0 124200.0 112790.0 115190.0 112010.0 116330.0 124710.0 105620.0 129800.0 107130.0 True False 111993.77411103612 128333.9219195145 128669.85161174521 129773.0421893033 126273.80956471602 108288.38091136487 118677.30086153584 113501.90072749263 97812.52923089021 100292.87168139245 1.1166673386999504 1.2795916575925959 1.2829411448153558 1.2939408356115538 1.2590506927138259 1.0797216102792662 1.1833074362308273 1.1317045650867614 0.9752690055741776 1.0 16.613859544441105 1.703641325491907 0.7704665387335977 0.9845714774514991 1.2480292805345632 0.6437627799449408 0.06714542225612176 0.38978165058363434 0.45509717209759776 0.06222520312301602 0.028337461977433833 50.54070847095748 -1.703641325491907 0.2634578030830641 SRS(ph)PHEAGFCVYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 S(0.161)RS(0.839)PHEAGFCVYLK 177.41 1.2723e-06 1261900000.0 826060.0 1000100.0 808220.0 810410.0 886910.0 948200.0 934800.0 867900.0 1194500.0 1016200.0 True False 821612.5847438934 1033387.7239267831 922010.3508258241 913007.8229067902 999852.7313725753 882653.1658227112 889580.1527172134 932667.105106901 900131.4804799575 951345.2459874086 0.8636324070670426 1.0862383853657902 0.9691648270853158 0.959701881895854 1.0509883090179533 0.92779479326309 0.9350760478062948 0.9803666009166616 0.9461670032793449 1.0 19.85960946881896 2.6477405426532794 21.98428431950578 0.9567640710987437 0.9891845831267141 0.05300887822445177 0.058413316850123104 63.333001835078356 15323.612262573817 0.01768176853325268 0.016670532796678034 444.36571402460055 -2.6477405426532794 0.03242051202797036 SRS(ph)PIER ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPIER 7 1 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 S(0.07)RS(0.93)PIER;S(0.309)RS(0.691)PIER 92.538 0.0094449 421490000.0 108823.0 142033.0 136322.0 148804.0 138767.0 143429.0 141419.0 104098.0 132695.0 124804.0 True False 108237.10905937191 146760.48254423853 155514.95266793453 167642.57114278205 156438.15491355176 133514.0908255491 134578.0226969575 111866.32135893327 99994.09527190276 116838.90186991992 0.9263790340983807 1.2560926215108659 1.3310203209635927 1.4348180996208206 1.338921818074932 1.1427194940106005 1.1518254668876213 0.9574407116858838 0.8558287836634157 1.0 16.834161178368152 1.9337714271859807 1.6492949275687987 0.9174322233410512 1.2634531366139372 0.5086245026599889 0.1322449579007213 0.30030443570865617 1.5216552706384223 0.09187225762983739 0.04263361540762211 85.85615344653466 -1.9337714271859807 0.346020913272886 SRS(ph)PIIHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 S(0.368)RS(0.632)PIIHS(1)PK;S(0.428)RS(0.577)PIIHS(0.995)PK 88.73 0.015923 822060000.0 1055219.0 884337.0 799301.0 769139.0 802247.0 1071243.0 985120.0 947451.0 1507230.0 1085124.0 True False 1049537.8181498535 913771.6224519946 911835.6331511638 866511.9185384017 904408.4001594909 997190.4928447786 937465.9820761478 1018154.6046786946 1135793.3623472636 1015870.4572986044 1.0331413918077479 0.8994962063193467 0.8975904620515402 0.8529748181107896 0.8902792611613959 0.981611863678466 0.9228204003186102 1.0022484632402484 1.118049406976119 1.0 19.954285012252733 1.5789198615422098 3.2191471304128982 1.0604604445006725 0.9210749161351255 0.4918640494298522 0.05495517549188527 0.1616363535534824 3.864192494651266 0.03606771391132305 0.014532564612518296 37.92449980989398 -1.5789198615422098 -0.13938552836554696 SRS(ph)PITTNHRPS(ph)PDPEQRPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 2 S(0.184)RS(0.816)PIT(0.119)T(0.053)NHRPS(0.828)PDPEQRPLR;S(0.422)RS(0.577)PIT(0.038)T(0.092)NHRPS(0.87)PDPEQRPLR 102.72 0.00065326 1109980000.0 153133.0 167445.0 163121.0 159277.0 140351.0 176089.0 151887.0 156555.0 184757.0 164119.0 True False 152308.5489426759 173018.30560236 186087.018926851 179441.4518689612 158223.8679244482 163916.3818989197 144539.645545314 168237.92907018214 139226.1129669614 153644.78491065514 0.9913030828299426 1.126092927286602 1.2111508961079356 1.1678980967255534 1.0298030487429548 1.0668528840353255 0.9407390275521827 1.0949797558570762 0.9061557998725551 1.0 17.229239273510725 3.1467037307185124 5.777685019074761 1.0135935509324236 1.1301350543468203 0.3793782597291412 0.07340754944031018 0.2281687262827733 11.562308962296907 0.021339955491644805 0.025755490757711753 1401.8570521149554 -3.1467037307185124 0.11654150341439662 SRS(ph)PITTNHRPSPDPEQRPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 1 S(0.453)RS(0.547)PITTNHRPSPDPEQRPLR;S(0.216)RS(0.784)PITTNHRPSPDPEQRPLR;S(0.45)RS(0.549)PITTNHRPSPDPEQRPLR 119.76 3.6573e-05 3172250000.0 1118540.0 1254310.0 1133120.0 1212510.0 1144160.0 1359850.0 1056920.0 962580.0 1304710.0 1212340.0 True False 1112517.9049214758 1296058.9501035921 1292653.4467444012 1366013.6416785477 1289861.9940323662 1265846.7702425795 1005792.7417735108 1034412.6074821993 983181.702718296 1134967.423263508 0.9802201209639302 1.1419349344643552 1.1389344048549692 1.203570793028301 1.1364749045602307 1.1153155097639178 0.8861864412649259 0.9114029057396456 0.8662642491457911 1.0 20.114219458055633 2.2440744255164264 23.680967724773428 0.9080829213324725 1.125921299960047 0.719156699995396 0.06212563621516084 33.44735113877357 143651.93725362138 0.021651365841840808 0.017611555161262653 175.41810920012244 -2.2440744255164264 0.2178383786275745 SRS(ph)PLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSPLAR 7 1 Q8N3Y1 Q8N3Y1 FBXW8 F-box/WD repeat-containing protein 8 1 S(0.125)RS(0.875)PLAR;S(0.19)RS(0.81)PLAR;S(0.157)RS(0.843)PLAR 77.192 0.023446 308712000.0 137660.0 151107.0 140130.0 145265.0 150831.0 145838.0 158396.0 130410.0 171474.0 156009.0 True False 136918.85385546397 156136.50514888976 159859.08596820527 163655.53410564398 170038.43380462175 135756.5623257251 150733.78034851936 140141.85640856205 129216.53033388045 146052.37205397512 0.93746408860011 1.0690446375714318 1.0945326236066042 1.1205263687546507 1.1642291830890794 0.9295060423637276 1.0320529425760656 0.9595315326804225 0.8847273653736153 1.0 17.15612626377622 2.7228096751402284 24.977872877856804 0.9646867692453709 1.0800830221759794 0.439124261317411 0.06544466204492087 797.9468379594095 1265383.78504454 0.021680681786678483 0.020505829126773914 528.2137170962491 -2.7228096751402284 0.11539625293060851 SRS(ph)PLGFYVHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 S(0.249)RS(0.751)PLGFYVHLK 63.462 0.0427 720060000.0 759130.0 746600.0 700690.0 531370.0 537530.0 656610.0 696090.0 570590.0 975010.0 687650.0 True False 755042.9284272712 771450.1296707692 799341.0614933395 598641.3875174068 605981.2593100773 611220.0961936835 662417.4673779691 613170.3231973124 734731.8499646402 643763.5882732158 1.172857462244087 1.1983438388307273 1.2416686436668984 0.9299087404479625 0.9413102423756474 0.949448069644907 1.0289762879487936 0.9524774845406145 1.141306938367594 1.0 19.296171453701565 3.741523994043879 24.999869466030344 0.9863730652626926 1.2036953771611012 0.7232562639244096 0.06013158346183194 127.50619546078129 1075671.4122162105 0.015407990082940389 0.026334657668554296 5514.726694829002 -3.741523994043879 0.21732231189840856 SRS(ph)PLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPLLK 7 1 A0A0U1RQD2;Q6ZUS6-6;Q6ZUS6;Q6ZUS6-5;Q6ZUS6-4 A0A0U1RQD2 CCDC149 Coiled-coil domain-containing protein 149 1 S(0.25)RS(0.75)PLLK 78.932 0.020589 497700000.0 424320.0 404490.0 352890.0 378360.0 387350.0 439840.0 513250.0 455680.0 593820.0 451920.0 True False 422035.5082663837 417953.2051306319 402573.8446251337 426260.33720587473 436676.72649667575 409434.8960719903 488422.1366945976 489685.1554961544 447481.0177803332 423078.0786918229 0.9975357493617659 0.9878866955786569 0.951535579129769 1.0075216813971821 1.0321421706529927 0.9677525655263967 1.1544491697722121 1.1574344787852957 1.0576795166602944 1.0 18.69056441046927 2.243727648614285 24.99997052829365 1.11282145302476 0.9914640562301266 0.4948664582492588 0.04859141509492445 86.10291595243159 416598.58909266995 0.016899675443164293 0.013743400949579576 175.27809667121542 -2.243727648614285 -0.12135739679463342 SRS(ph)PLLVTVVESDPRPQGQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 S(0.002)RS(0.807)PLLVT(0.009)VVES(0.182)DPRPQGQPR 88.025 0.001983 530480000.0 13701.0 13799.0 15109.0 13972.0 16987.0 13543.0 23755.0 14582.0 18680.0 14455.0 True False 13627.2353383242 14258.291373328342 17236.21587021775 15740.853767418557 19150.193760162743 12606.804286792858 22605.879897087532 15670.182885895649 14076.564299175892 13532.469524451875 1.0070028470192445 1.0536355797857129 1.2736933077198926 1.163191517924821 1.4151292730096439 0.9315967247525347 1.6704918386286312 1.1579691982739093 1.0402066137108892 1.0 13.724137518610934 4.318842581872073 5.371606161975363 1.2287625586912991 1.0205275515125247 0.09954612205688662 0.2044478426143573 0.37921220433511926 18.32897593376418 0.0469372521788961 0.1331343001631783 20837.354574501056 -4.318842581872073 -0.2082350071787744 SRS(ph)PQAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSPQAFR 8 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 S(0.002)RS(0.998)PQAFR;S(0.213)RS(0.787)PQAFR 103.31 0.0029051 1372340000.0 545180.0 688180.0 548310.0 550060.0 597810.0 480200.0 609280.0 563170.0 847100.0 764640.0 True False 542244.811455192 711085.6552864056 625507.2820040436 619697.5396010771 673937.560002524 447004.9042692117 579806.7987243737 605196.6051193145 638343.5555584533 715840.0205587606 0.7574944064065237 0.993358341059719 0.8738087617898112 0.8656927830290377 0.9414639313913619 0.6244480490491363 0.8099670066948702 0.8454355550656674 0.8917405247337021 1.0 19.44927767738035 5.044429196115209 14.285163631637893 0.8589607683984533 0.31999641961201725 0.09017704270824267 0.10182405237735746 773306.5672750059 7702972.061869295 0.024072021055369403 10783640.191934936 110771.79572118592 -5.044429196115209 -0.538964348786436 SRS(ph)PQWR ddPTM_BT-474_Trastuzumab_2h_R1 5 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.176)RS(0.824)PQWR;S(0.193)RS(0.807)PQWR;S(0.017)RS(0.983)PQWR;S(0.003)RS(0.997)PQWR;S(0.128)RS(0.872)PQWR 109.44 0.0042562 2603620000.0 395640.0 556095.0 426874.0 495861.0 564069.0 515266.0 531431.0 468017.0 547460.0 498169.0 True False 393509.91819973674 574604.2859084734 486974.1487446779 558636.9517582265 635899.8436510994 479646.8742256964 505723.65226643276 502942.8050821719 412545.81858816027 466375.4279160617 0.8437621166236929 1.232063808498699 1.044167680361418 1.1978267256798316 1.3634934552459927 1.0284565727850123 1.0843702776670578 1.0784075982079648 0.8845788047444264 1.0 18.831132253203545 1.4210091353052858 3.3380853703423425 0.9437688846404869 1.1236656691619826 0.19636765625495312 0.1334338199389201 0.3558918201466644 6.963987445537565 0.09968771011033135 0.0338113127678208 26.363868411589092 -1.4210091353052858 0.1798967845214957 SRS(ph)SDIVSSVR ddPTM_BT-474_Trastuzumab_2h_R1 6 SRSSDIVSSVR 11 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 S(0.297)RS(0.681)S(0.023)DIVSSVR;S(0.02)RS(0.961)S(0.02)DIVSSVR;S(0.001)RS(0.755)S(0.244)DIVSSVR;SRS(0.755)S(0.245)DIVSSVR;S(0.048)RS(0.907)S(0.045)DIVSSVR;S(0.02)RS(0.96)S(0.02)DIVSSVR 213.73 9.2079e-10 6147740000.0 1743640.0 1589660.0 1177450.0 1669870.0 1551940.0 1638080.0 1216180.0 1084828.0 2041410.0 1615880.0 True False 1734252.4359766175 1642570.8721302391 1343224.725421132 1881275.3707843695 1749570.3599309467 1524843.3852255514 1157348.7271412304 1165783.3740049645 1538331.85899254 1512753.1549755295 1.146421298327863 1.0858155322484253 0.8879338449919546 1.2436102774578588 1.1565471565380725 1.0079922029646784 0.765061188822939 0.7706368816159054 1.0169087097474434 1.0 20.52874516286271 2.433362764351576 5.381756211661799 0.8560084037356726 1.0977108299760439 0.4255494219913951 0.11562119429902093 0.1641148424096212 11.24996376794414 0.041313961358343934 0.034764089047134204 271.2456389285676 -2.433362764351576 0.2417024262403713 SRS(ph)SHKDSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSHKDSPR 10 2 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 S(0.147)RS(0.817)S(0.036)HKDSPR 61.212 0.048557 9455300.0 6034.4 6844.0 6711.5 5129.5 5690.3 5951.0 5637.7 6075.5 12072.0 7550.4 True False 6001.911460884867 7071.798402714634 7656.420862596227 5778.894174060515 6414.92597594949 5539.621377147182 5364.982912894566 6528.884660763893 9097.017356512379 7068.5270077773375 0.8491035620690283 1.0004628114080483 1.0831706314727303 0.817552817963648 0.9075336302586514 0.7837023712369019 0.7589958851386716 0.9236556150355388 1.2869749732162217 1.0 12.787193891496003 1.3597702796336444 7.502532002603913 1.1405095757601957 0.8881406708427757 0.4497502450092762 0.11247351248608657 0.1995480964625392 11.918975499309317 0.07746286445848154 0.028198912693472807 22.896562171626556 -1.3597702796336444 -0.25236890491742003 SRS(ph)SPATADK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSPATADK 10 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 S(0.468)RS(0.516)S(0.016)PATADK 73.726 0.026723 111680000.0 160650.0 114380.0 102430.0 118650.0 93110.0 108740.0 123590.0 115220.0 191850.0 143460.0 True False 159785.0782498931 118187.0691558298 116851.25366247955 133671.07783454127 104967.00659379257 101223.05974642668 117611.47954035149 123818.30147530507 144571.13815829187 134304.25997771483 1.1897245722243384 0.8799949396649118 0.8700487511108638 0.9952854649340339 0.781561259569948 0.7536846542561098 0.8757092259014481 0.9219238577826965 1.0764449182943314 1.0 17.03514554056667 -0.7199649116020903 15.873935635319203 0.9999999999107652 0.9147800412239119 0.02122579320501583 0.12517930047347775 0.0 0.0 0.11910310792239799 0.028072871757440283 0.19056146740176264 0.7199649116020903 -0.08521995868685328 SRS(ph)SSPVT(ph)ELASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.016)RS(0.961)S(0.029)S(0.309)PVT(0.684)ELASR 125.96 0.0015351 0.0 227320.0 249150.0 203070.0 212100.0 219190.0 254300.0 262340.0 248340.0 287260.0 253590.0 True False 226096.13437762612 257442.8071356447 231660.49088391798 238951.8382528969 247102.5472590849 236720.83955781013 249649.611963879 266872.39184496814 216468.6220867918 237405.66909067836 0.9523619854725015 1.0844004194243273 0.9758001642135766 1.0065127727073273 1.0408451837125372 0.9971153615013015 1.0515739279525123 1.1241197098079188 0.9118089846629166 1.0 17.856994860433293 2.2306189022146086 24.893307786226508 1.042756723457326 1.0126666452324533 0.0 0.06073581674891076 581.6746020644968 1823243.0709711344 0.0219937907803372 0.016544768382085698 170.0665502306481 -2.2306189022146086 -0.03009007822487275 SRS(ph)TTELDDYSTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSTTELDDYSTNK 14 1 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 S(0.02)RS(0.746)T(0.225)T(0.009)ELDDYSTNK;S(0.044)RS(0.471)T(0.471)T(0.015)ELDDYSTNK 211.45 1.0948e-07 843780000.0 1508430.0 1166930.0 1100180.0 1178190.0 1088760.0 1544970.0 1544650.0 1328400.0 1842250.0 1458720.0 True False 1500308.7804823287 1205770.559625918 1255075.781064012 1327348.7331974567 1227407.1324138918 1438169.8603681868 1469929.3783639767 1427531.9534785207 1388252.172385266 1365623.2407269748 1.0986256939239374 0.8829452543470475 0.9190498108364691 0.9719728645587907 0.8987889893851652 1.053123451240177 1.076379878817437 1.0453336695694997 1.0165704060852427 1.0 20.381128085377334 2.7218759856418027 24.644414975217195 1.0445625748857719 0.9493397649590397 0.33404470756163873 0.058766700207389305 689.8304973885796 1018928.1913814691 0.01817354523838913 0.017178819371076605 527.0793305246181 -2.7218759856418027 -0.09522280992673215 SRS(ph)VS(ph)PCSNVESR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.044)RS(0.944)VS(0.788)PCS(0.22)NVES(0.004)R;S(0.196)RS(0.804)VS(0.999)PCS(0.001)NVESR;S(0.124)RS(0.876)VS(1)PCSNVESR 130.77 7.8635e-05 550509000.0 475696.0 555050.0 475160.0 517120.0 511150.0 520830.0 546320.0 504677.0 624780.0 550290.0 True False 473134.9055907946 573524.50371519 542058.3978352419 582587.338978492 576241.922676587 484826.248001944 519892.4144549305 542338.5604378801 470811.3406230783 515170.0210730277 0.9184053540330631 1.1132722795488332 1.0521932093529227 1.1308642101592856 1.1185470798094095 0.9410994975835709 1.0091666696211608 1.0527370348691178 0.9138950664140812 1.0 18.974689116593396 2.74152007688603 24.972373347239994 0.9942381891729618 1.0720097820771413 0.2727414034071879 0.06654028089358838 377.5984675173656 3186245.3949351776 0.020576743900701838 0.020957858623682286 551.4676954483594 -2.74152007688603 0.07777159290417945 SRS(ph)VSPCS(ph)NVESR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.041)RS(0.947)VS(0.374)PCS(0.605)NVES(0.033)R;S(0.058)RS(0.844)VS(0.1)PCS(0.989)NVES(0.009)R 150.11 0.00052706 996850000.0 1291610.0 1315940.0 1074780.0 1274710.0 1258720.0 1399780.0 1350340.0 1156510.0 1514510.0 1396340.0 True False 1284656.115271361 1359740.2673974722 1226099.6818447714 1436088.1553010407 1419010.5309820487 1303016.50332769 1285018.8954002613 1242814.6488387864 1141279.303894265 1307224.3857331804 0.9827357332772204 1.0401735786429942 0.937941255706526 1.0985781561101957 1.0855141217291253 0.996781055761035 0.9830132526785256 0.9507278646287886 0.8730553961125488 1.0 20.31807537105396 2.005759803344532 1.9261833324576287 0.9346330586012065 1.0276550341581032 0.33671273710529825 0.05238348304270565 0.3774707635413033 2.615782649731263 0.031006418576858378 0.01599208031889532 101.33507735273493 -2.005759803344532 0.09302197555689673 SRS(ph)WEDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 S(0.011)RS(0.989)WEDS(1)PER;S(0.009)RS(0.991)WEDS(1)PER 150.26 0.0002616 5119800000.0 3462800.0 3269200.0 2174270.0 2808000.0 3027900.0 3440500.0 3187100.0 3027600.0 4092100.0 3157100.0 True False 3444156.669553244 3378013.345726869 2480388.3169063716 3163492.51208927 3413485.1172306347 3202666.3330658544 3032927.7970956755 3253534.8858412886 3083656.786330712 2955611.1750707035 1.1652942371456738 1.1429153381943282 0.8392133369326011 1.0703344671220476 1.1549168395430018 1.0835885180293516 1.0261592670501127 1.1007993586177514 1.0433228877803744 1.0 21.49502505778866 0.9899123429244162 21.10177382117422 0.9999999911761828 1.069858630962318 0.06102966772888174 0.08827971859833593 193.28823182015458 404336.52757907595 0.08531245874508887 0.021328114689390238 9.770399973755033 -0.9899123429244162 0.06985863978613516 SRS(ph)WEDSPER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.017)RS(0.976)WEDS(0.007)PER 140.01 0.00010537 351480000.0 281120.0 267420.0 290840.0 275550.0 284230.0 303440.0 271930.0 262330.0 278080.0 262960.0 True False 279606.48115536803 276320.9130411961 331787.7439734019 310434.60174722224 320425.00573680166 282463.9070209278 258775.70702652104 281906.3966847486 209550.91008109367 246177.66766861748 1.1357914135889429 1.1224450847148117 1.347757280810805 1.2610185346507619 1.3016006235306825 1.147398582885088 1.0511745824761891 1.1451339163072498 0.851218195645482 1.0 17.909340366214195 1.807130510549118 1.0874109692175569 0.9540842444875377 1.2309612526894982 0.5808862188624202 0.09042215575718227 0.3689694261154239 0.8074993070458247 0.0777888399059003 0.03209748730584843 64.14022964855693 -1.807130510549118 0.2768770082019605 SRS(ph)WPASPR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRSWPASPR 9 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 SRS(1)WPASPR;SRS(1)WPASPR;SRS(1)WPASPR;SRS(1)WPASPR 140.45 6.6048e-05 2295190000.0 228713.0 317207.0 318076.0 321035.0 234943.0 268342.0 280711.0 229278.0 348135.0 299452.0 True False 227481.6346204031 327765.04323931923 362858.3360338464 361677.9980835394 264861.5984337386 249792.14914912242 267131.93650984403 246387.88861009336 262341.7940199996 280340.71698624437 0.8114470030108579 1.1691667438212403 1.2943476064936046 1.2901372371865842 0.9447846223734053 0.891030571065348 0.9528831180201038 0.8788872742384511 0.9357962583539804 1.0 18.09682177259972 3.135477068640828 7.8389380445089545 0.9222276720455319 1.153652846037716 0.3810091688662043 0.12881845898720928 0.23378796155238377 15.887620160231707 0.038274830219924935 0.04586379589012216 1366.082942686263 -3.135477068640828 0.2314251739921841 SRS(ph)YER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSYER 6 1 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4;Q96S94;Q96S94-3;A0A0A0MSF3 O75494-2;O75494-6;Q5JRI1;Q96S94 SRSF10;CCNL2 Serine/arginine-rich splicing factor 10;Cyclin-L2 1 S(0.15)RS(0.85)YER 57.59 0.087876 144790000.0 43047.0 56502.0 45168.0 47343.0 63071.0 46750.0 57628.0 47134.0 59382.0 60355.0 True False 42815.23973497133 58382.63491381974 51527.26179270601 53336.618945812865 71102.7179988947 43518.28253766273 54840.31347966158 50651.37842160236 44748.101778033335 56503.09222748483 0.7577503822727898 1.0332644216845295 0.9119370243535376 0.9439592921937165 1.2583863147282437 0.7701929367415065 0.9705718982400325 0.8964355121959854 0.7919584577402384 1.0 15.786042203169021 -0.7192639715242669 7.52174335445345 1.0000112125565088 0.9338348705089533 0.021790041337465538 0.14016546025737575 0.0 0.0 0.12815670760752748 0.030206825667941434 0.19086927702033102 0.7192639715242669 -0.06617634204755551 SRSES(ph)ETSTMAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SRSESETSTMAAK 13 1 Q96B23-2;Q96B23;A0A087WVF1 Q96B23-2 C18orf25 Uncharacterized protein C18orf25 1 SRS(0.029)ES(0.811)ET(0.019)S(0.043)T(0.099)MAAK;S(0.12)RS(0.12)ES(0.76)ETSTMAAK;SRS(0.001)ES(0.787)ET(0.1)S(0.1)T(0.013)MAAK 188.75 1.5374000000000002e-05 3146520000.0 2716790.0 2352270.0 2243720.0 2220560.0 2284890.0 2397390.0 2728940.0 2720600.0 3255530.0 2818720.0 True False 2702163.1045037475 2430563.884972759 2559616.2732361523 2501682.6683208523 2575857.1978959353 2231664.072149029 2596930.746636834 2923624.9869268746 2453248.2533670263 2638826.8763723946 1.0240016610026428 0.9210774328303282 0.969982644998245 0.9480283419577433 0.9761372452887004 0.8457031009237356 0.9841231987931109 1.1079260307315018 0.9296738165481762 1.0 21.33146527323129 1.996900313710385 24.998957933615262 1.0298999575935257 0.9458268025901577 0.17993302375186704 0.05939951579231576 150.90040555551434 1217016.9531999305 0.02169009941061229 0.015712535843552002 99.28881185324087 -1.996900313710385 -0.08407315500336798 SRSHS(ph)DNDRPNCSWNTQYSSAYYTSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.26)RS(0.26)HS(0.349)DNDRPNCS(0.132)WNTQYSSAYYTSR 120.15 0.00012714 233190000.0 39750.0 75339.0 66652.0 79058.0 77371.0 60910.0 49962.0 50623.0 52605.0 59347.0 True False 39535.99041664016 77846.61307161282 76036.02225043038 89066.73469400065 87223.73823615417 56699.435066717335 47545.147186625436 54400.74531838538 39641.20262088585 55559.42365047701 0.7115982819649124 1.401141479820669 1.368553114027445 1.6030896082421109 1.569917981598884 1.0205187768579478 0.8557530669455969 0.9791452420496504 0.713491969791978 1.0 15.761744013049615 2.555139249166441 5.515830279078514 0.8986038643656895 1.3505752539958147 0.43607787729197267 0.2401354441179053 0.21079623988803925 11.118535360028769 0.08036580306027855 0.0748966546542055 359.0370353329227 -2.555139249166441 0.4519713896301252 SRSS(ph)KEENR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSKEENR 9 2 Q14696 Q14696 MESDC2 LDLR chaperone MESD 1 S(0.003)RS(0.026)S(0.971)KEENR 70.089 0.042052 80511000.0 110510.0 106310.0 84566.0 83260.0 91941.0 80178.0 112880.0 102650.0 157260.0 119660.0 True False 109915.02643881513 109848.4640842478 96472.15773915117 93800.70746315992 103649.14137299842 74635.48357871067 107419.56315652467 110310.26424613823 118505.38017603845 112023.19635391988 0.9811809519481633 0.980586768272516 0.8611801919520523 0.8373328963655988 0.9252471340447658 0.66625025894558 0.9589046434378579 0.9847091302200492 1.0578646569023002 1.0 16.77343797278884 2.0115753977682727 24.999709991067004 1.0023209782142195 0.8743681926155262 0.3489091872481952 0.08575505423531693 264.1655006116459 570523.3378917109 0.033283633653782 0.02456307672711062 102.70117154669089 -2.0115753977682727 -0.12795278559869327 SRSS(ph)S(ph)SPPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSSSSPPPK 10 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.28)RS(0.38)S(0.432)S(0.63)S(0.279)PPPK;S(0.272)RS(0.361)S(0.411)S(0.513)S(0.443)PPPK 63.727 0.043647000000000005 660640000.0 824710.0 720077.0 522311.0 543998.0 624063.0 537899.0 720316.0 736200.0 926870.0 796120.0 True False 820269.8529938953 744044.3276492616 595847.8487914025 612868.091022629 703533.7239388033 500715.3082080478 685471.5632056614 791138.9823478515 698455.3079216898 745310.9400073767 1.1005740140964209 0.9983005584781801 0.7994620993829838 0.8222985308877435 0.9439465948693039 0.6718206876221245 0.9197121985072122 1.061488487395638 0.9371327729534963 1.0 19.507482910774765 1.9862349978226967 24.66819425723936 1.0024294652101773 0.8818645198576229 0.15808426859074676 0.11289799990355341 945.840280624543 1695034.9469131518 0.046796276063096276 0.03162620613710712 96.88019355914464 -1.9862349978226967 -0.12056494535255435 SRSS(ph)SS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSSSPPPK 10 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.236)RS(0.338)S(0.405)S(0.262)S(0.758)PPPK 62.042 0.049882 652150000.0 377720.0 349250.0 257650.0 289140.0 292870.0 263540.0 341660.0 390930.0 477950.0 416970.0 True False 375686.3974886371 360874.5751239164 293924.8804660535 325745.0943538081 330165.25852350984 245322.10010643068 325132.6005320531 420103.1817023173 360165.6267018803 390358.6176140231 0.962413484771858 0.9244693439321998 0.7529611675095107 0.8344765035414096 0.8457998456433952 0.6284531429225397 0.8329074493586206 1.0761980464786483 0.9226531974708526 1.0 18.57444059360947 1.7563543124590733 24.999995834376772 1.002735154738196 0.8204077193830671 0.42551641041562804 0.09230730546553195 6.604899581556416 9289.554049989578 0.04415847272284915 0.024488580000954736 57.062962181238504 -1.7563543124590733 -0.18232743535512885 SRSS(ph)SS(ph)PPPKQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSSSSPPPKQK 12 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.245)RS(0.344)S(0.411)S(0.066)S(0.934)PPPKQK 57.288 0.061285 173600000.0 203090.0 262090.0 176490.0 288840.0 281090.0 222430.0 334030.0 272490.0 546940.0 360360.0 True False 201996.58600542045 270813.5072132491 201338.25792141978 325407.1143845677 316885.14534904016 207053.93764389982 317871.6927814837 292824.5874761833 412153.9656205175 337361.5162802818 0.598754085032036 0.802739773638721 0.5968026825980556 0.9645650101780361 0.9393043665530902 0.6137449817242292 0.9422286699630379 0.8679845606127257 1.221698224992852 1.0 18.36393588541219 3.7064745236468317 0.2536662771849802 1.0755652972695182 0.468994798992537 0.41932636796570844 0.1476911262713844 5.992759776981893 0.5109723963259344 0.229922437687136 1.1222112764376777 5087.149768005133 -3.7064745236468317 -0.6065704982769813 SRSSPS(ph)TDHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRSSPSTDHYK 11 1 Q13796 Q13796 SHROOM2 Protein Shroom2 1 S(0.028)RS(0.028)S(0.048)PS(0.833)T(0.06)DHY(0.002)K;S(0.006)RS(0.14)S(0.162)PS(0.346)T(0.346)DHYK 101.71 0.0018671 462560000.0 526420.0 575120.0 563570.0 511930.0 521110.0 680020.0 747050.0 658730.0 756430.0 668890.0 True False 523585.81321075984 594262.5215326187 642915.7573617455 576740.2855106347 587470.2696390423 633011.8179948962 710912.3374918638 707887.7775631625 570017.9621426987 626200.8675344591 0.8361307694642367 0.9489966436367434 1.0266925370019016 0.9210148299241973 0.9381498814463308 1.0108766225241013 1.1352784295731482 1.1304484140214135 0.9102797388113348 1.0 19.25626598161476 2.5542082641356654 3.904920706870965 1.066718296555873 0.9401075366471099 0.3051941750552495 0.07534111339315065 0.25241064254135726 7.290928850165265 0.02619021411904161 0.023972129284652862 358.2682019600465 -2.5542082641356654 -0.12661075990876314 SRST(ph)ERPDTNLMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSTERPDTNLMR 13 2 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4 A0A590UJL1 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 S(0.046)RS(0.23)T(0.725)ERPDTNLMR 82.12100000000002 0.021242 388960000.0 185040.0 262260.0 230740.0 277690.0 241000.0 191940.0 195840.0 179880.0 162970.0 233940.0 True False 184043.76519987668 270989.165560482 263226.18637196656 312845.5255278027 271689.9214810866 178671.63957815996 186366.47101854847 193303.55901213197 122808.2271861187 219009.74891388955 0.8403450810412972 1.237338369202139 1.2018925535386193 1.4284547928996878 1.240538025491778 0.8158159189909406 0.8509505715739815 0.8826253624359673 0.5607431988536937 1.0 17.740635565252678 2.7360482672972397 24.46818402677482 0.8229663371715406 1.2062995757940693 0.537251141789673 0.1702721590740694 126.52330784597156 1232224.41140809 0.05375090360291142 0.05291035291673165 544.563171990162 -2.7360482672972397 0.38333323862252877 SRST(ph)TELDDYSTNK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 S(0.007)RS(0.297)T(0.612)T(0.084)ELDDYSTNK 139.49 6.5005e-05 173570000.0 290590.0 215970.0 180330.0 198460.0 178970.0 279640.0 244470.0 242280.0 324710.0 255070.0 True False 289025.49572758435 223158.4308933781 205718.89654354122 223585.0156514376 201760.76866170188 260309.14500175396 232644.05213390826 260360.16387291183 244689.5713910815 238791.2142235866 1.2103690525940458 0.934533674611784 0.8615011118077448 0.9363201086707025 0.8449254270837112 1.0901119031876088 0.974257168088594 1.0903255579124014 1.0247008969181424 1.0 17.86539023135261 2.714008059229344 24.928987379521498 1.040299231011484 0.9497390315011794 0.13194505441086146 0.09915842820862616 1389.9989126149444 1411308.599259169 0.03200959234443274 0.030191880474848755 517.6164373014257 -2.714008059229344 -0.09056019951030458 SRSWEDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.004)RS(0.015)WEDS(0.981)PER 118.31 0.0022143 464160000.0 356680.0 426630.0 411730.0 383430.0 386190.0 430690.0 409150.0 356230.0 414210.0 388410.0 True False 354759.67451087345 440830.1216467185 469698.00517868507 431972.1986860365 435369.0073725344 400917.414035208 389357.85139521625 382813.69149928744 312133.495629638 363621.3412654687 0.9756294096387329 1.2123329178440108 1.2917228772768128 1.1879726233413428 1.197314233145312 1.102568437374831 1.070778326817067 1.0527811436122694 0.8584025748966121 1.0 18.47207734953078 1.8723146841673564 1.1789216213487026 0.9427575702677261 1.1795845962919913 0.5130345128354026 0.08638946218146583 0.37276480304557236 0.9571337298513888 0.06899749275016746 0.029336383003352805 74.52717926161607 -1.8723146841673564 0.2368270260242652 SRT(ph)AS(ph)GSSVTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 S(0.427)RT(0.577)AS(0.991)GS(0.004)SVTSLDGTR;S(0.031)RT(0.968)AS(0.942)GS(0.009)S(0.024)VT(0.024)S(0.001)LDGTR 154.39 9.016e-06 486820000.0 494900.0 462010.0 427260.0 412980.0 428930.0 629810.0 576370.0 489260.0 676630.0 610490.0 True False 492235.5133885587 477387.72355905717 487414.49418950506 465263.2256562065 483551.69303270715 586272.7171132697 548488.781152782 525771.0656119402 509883.60287748347 571528.0055332159 0.861262280453466 0.8352831688688132 0.8528269646817467 0.8140689890115392 0.8460682387411096 1.0257987560317319 0.9596883719478644 0.9199392864771586 0.8921410638517698 1.0 19.12446466833407 2.8334825544123037 8.64789712757941 0.9516858359680069 0.8401398654990009 0.7133645167039306 0.03711150228767238 0.20262268845085132 16.936386807917007 0.011687866472892609 0.01240537667921448 681.5261973034493 -2.8334825544123037 -0.11154597046900605 SRT(ph)ASGS(ph)SVTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 S(0.001)RT(0.999)AS(0.379)GS(0.458)S(0.094)VT(0.012)S(0.057)LDGTR;SRT(1)AS(0.002)GS(0.569)S(0.319)VT(0.103)S(0.008)LDGTR 241.2 1.7052000000000002e-18 1312040000.0 1252130.0 1131820.0 973750.0 964870.0 1026560.0 1497100.0 1453160.0 1191010.0 1599550.0 1540130.0 True False 1245388.6712047218 1169491.9445003616 1110845.5360132721 1087022.443069649 1157286.3311021763 1393609.000794329 1382865.0991897176 1279889.2140262374 1205362.3353718852 1441837.5848283686 0.8637510107304968 0.8111121230340058 0.7704373555676892 0.75391462568861 0.8026468052155373 0.966550612536723 0.9590990786624064 0.8876791862646519 0.8359903695500956 1.0 20.459477231295857 2.754746293723698 22.531570869555914 0.9225446749990414 0.7967249445842135 0.622323130607122 0.050237077707552896 158.21992878093548 220251.98402995485 0.015917620803232512 0.01681645046063392 568.5207152201984 -2.754746293723698 -0.12581973041482786 SRT(ph)ASGSSVT(ph)SLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 S(0.007)RT(0.993)AS(0.006)GS(0.329)S(0.177)VT(0.419)S(0.069)LDGTR 262.0 2.3666e-26 1101500000.0 983550.0 932560.0 778500.0 818350.0 916550.0 1211300.0 1201900.0 907680.0 1339700.0 1204700.0 True False 978254.6760826781 963599.6958555765 888106.0331566953 921953.0260926837 1033267.2096825314 1127565.682093494 1143759.5052961279 975415.6907056492 1009548.8860602762 1127815.0146044407 0.8673893000314259 0.8543951653219837 0.7874571819459074 0.8174683030053833 0.9161672759294927 0.9997789242848181 1.0141375052514967 0.8648720562101733 0.8951369444344168 1.0 20.105099024119056 3.136307797909516 4.5777378203351375 0.9457476527573488 0.8303369527828182 0.5839282334951772 0.048739563635569645 0.1753415061470665 6.322123032859776 0.015722368173453898 0.01913039521554195 1368.6985208333142 -3.136307797909516 -0.11541069997453068 SRT(ph)GS(ph)ESSQTGTSTTSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 S(0.391)RT(0.609)GS(0.991)ES(0.008)S(0.001)QTGTSTTSSR;S(0.41)RT(0.593)GS(0.502)ES(0.469)S(0.025)QTGTSTTSSR 106.58 0.0010195 393920000.0 154398.0 184797.0 159360.0 169347.0 192212.0 205511.0 198993.0 182549.0 208112.0 189839.0 True False 153566.7383232306 190947.8564328545 181796.5028180489 190786.31283646091 216689.0588702183 191304.5082908579 189366.94836291895 196171.7333450393 156825.58615792796 177723.31249065528 0.8640776281463083 1.0744108567236759 1.0229187171357037 1.073501895518026 1.2192494942474799 1.0764176382370585 1.0655155235916272 1.1038041695028278 0.882414264961294 1.0 17.43927341077642 4.7397202465371535 24.38157912315145 1.067781449172361 0.864077535463566 0.33388143987129293 0.08084836387891572 75.94828962737242 1596552.6423648642 0.01884907742212957 0.11604128349865851 54918.69977102445 -4.7397202465371535 -0.20370391370879493 SRT(ph)PSASNDDQQE ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 S(0.069)RT(0.93)PS(0.001)ASNDDQQE;S(0.485)RT(0.51)PS(0.005)ASNDDQQE 126.57 0.0011914000000000002 489980000.0 584060.0 629090.0 528790.0 568790.0 614770.0 639930.0 639780.0 595980.0 716010.0 642790.0 True False 580915.4858551668 650028.8803570651 603239.0356749252 640798.7556806473 693057.3154727296 595693.1453331874 608831.3972030585 640455.05392512 539558.9295424473 601766.5918797934 0.9653501767861653 1.0802010100403054 1.0024468686281374 1.0648626300089634 1.1517045393094405 0.9899073052100917 1.01174010890368 1.0642914754115411 0.8966249320305032 1.0 19.198844489603886 1.250283853020096 24.999999998344606 0.9483124528253546 1.0435838214677806 0.3082439987658301 0.05564500106199859 214.49232870534772 457414.6313756861 0.036360036154078436 0.013040423184518146 17.794420657848544 -1.250283853020096 0.09527136864242602 SRT(ph)PSRHSCS(ph)GS(ph)SPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTPSRHSCSGSSPPR 16 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.422)RT(0.576)PS(0.005)RHS(0.427)CS(0.577)GS(0.609)S(0.385)PPR 75.064 0.048879 95959000.0 32695.0 40129.0 24734.0 44248.0 43428.0 49078.0 44353.0 36685.0 50849.0 46494.0 True False 32518.973752755974 41464.669506507234 28216.332208218 49849.79226315038 48958.298382077344 45685.353377185274 42207.475945086204 39422.62098265548 38317.94529169135 43526.71311448394 0.7471038225933713 0.9526257909125112 0.6482532263349042 1.1452689324837253 1.1247873978746628 1.049593459010417 0.9696913211450661 0.9057109568316386 0.8803316986262554 1.0 15.409613459806835 3.736740509534153 24.99854002222851 1.0045902485919467 0.7996574355311158 0.49166173405435554 0.10573736913727375 156.89457349276003 2154898.67127395 0.029582094483901367 0.04850816379507934 5454.318687810907 -3.736740509534153 -0.2049328130608309 SRT(ph)S(ph)VQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.339)RT(0.851)S(0.81)VQTEDDQLIAGQSAR;S(0.12)RT(0.89)S(0.99)VQTEDDQLIAGQSAR 169.49 5.7643e-11 1968490000.0 658370.0 637800.0 652450.0 606890.0 719870.0 811250.0 699850.0 677920.0 844460.0 764640.0 True False 654825.4090717832 659028.787441758 744309.2888029377 683722.2117741659 811541.1774962237 755170.196977089 665995.5818133738 728509.832808009 636354.1481842651 715840.0205587606 0.9147650176929875 0.9206369698739982 1.0397704339329268 0.9551327002372336 1.133690704890685 1.054942690110604 0.930369304154747 1.017699223129993 0.8889614018611987 1.0 19.44927767738035 4.255424705609455 23.9717756178335 1.004842242249183 0.9177008374075828 0.21477466317811134 0.06479473536024903 222.27089272810198 315941.7371404057 0.015715615527589884 0.042754307095534294 18006.309288593966 -4.255424705609455 -0.08714140484160016 SRT(ph)SPAPWKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTSPAPWKR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.184)RT(0.631)S(0.184)PAPWKR;S(0.013)RT(0.694)S(0.293)PAPWKR 79.88600000000002 0.041260000000000005 3702200000.0 1077910.0 1775350.0 1690940.0 1687840.0 1863890.0 1871560.0 2198700.0 1716920.0 2340300.0 1885970.0 True False 1072106.6523270607 1834441.451528263 1929009.6540860413 1901520.3709418643 2101245.343358435 1742183.4623783513 2092340.4811503424 1845045.2887431053 1763564.4234133477 1765605.7799398499 0.6072174573214101 1.038986999459618 1.092548334403254 1.076979013405045 1.1900988132413226 0.9867341182116562 1.1850552965575496 1.0449927779495385 0.9988438208858992 1.0 20.751731826911673 4.739618967905718 4.0447136005770785 1.0785733222921403 0.5654654718108155 0.8063465506674845 0.0678849079039606 0.08729760799236792 3.047696068512974 0.015238703537572135 0.13140488803852968 54905.89407698973 -4.739618967905718 -0.5131078504813248 SRT(ph)SVQT(ph)EDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.325)RT(0.638)S(0.039)VQT(0.998)EDDQLIAGQSAR 153.06 1.5997e-07 337770000.0 387840.0 378780.0 322860.0 370440.0 374440.0 479800.0 381100.0 367280.0 524330.0 407440.0 True False 385751.91253307444 391387.46332265425 368315.8816505729 417337.66601793154 422122.71452024137 446632.5553277124 362664.73705662217 394688.2986100504 395115.89716203936 381436.83037306665 1.0113127045329824 1.0260872368823308 0.9656012537917202 1.0941200030677474 1.1066648024192673 1.1709214206999379 0.9507858396943883 1.034740924792247 1.0358619454120197 1.0 18.54108462703142 6.480323165903302 9.442217030679975 1.041178850830967 0.570992502153312 0.0 0.06379054566727929 0.0 0.0 0.014501503459990303 0.0 3022199.754087 -6.480323165903302 -0.47018634867765496 SRT(ph)SVQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 S(0.142)RT(0.596)S(0.262)VQTEDDQLIAGQSAR 304.56 4.7108999999999995e-50 1982600000.0 255510.0 364710.0 354210.0 351700.0 361670.0 432960.0 402740.0 353340.0 382800.0 413040.0 True False 254134.3625498298 376849.1518781496 404079.6891514882 396225.18393938703 407726.5307139608 403030.49427821237 383257.92758379434 379708.0250241645 288464.06925720186 386679.4335786646 0.6572223409914809 0.9745776970615243 1.044999175187019 1.0246864703208491 1.0544303505891386 1.0422858297588289 0.9911515697558447 0.9819710903939713 0.7460031338814864 1.0 18.560778507895243 4.736708195152556 5.25868148553985 0.9917440887247951 0.6434864231392352 0.5754037870951149 0.08424403802670201 0.10730805765975096 10.415756342271841 0.020121261921033678 0.13528202200065284 54539.12865527306 -4.736708195152556 -0.34825766558555993 SRTPS(ph)ASNDDQQE ddPTM_BT-474_Trastuzumab_2h_R1 2 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 SRTPS(0.98)AS(0.02)NDDQQE;S(0.008)RT(0.02)PS(0.959)AS(0.013)NDDQQE 225.7 3.1588e-11 3102570000.0 524120.0 630730.0 565733.0 560490.0 589470.0 584970.0 648900.0 533320.0 619850.0 579930.0 True False 521298.1961552059 651723.4667656634 645383.2889606128 631447.9765316654 664535.5104375782 544532.4007712639 617510.2279612748 573119.0465440871 467096.2730644633 542918.370896947 0.9601778537977583 1.2004078360600714 1.1887298782953046 1.1630624609155518 1.2240063075038508 1.0029728776199824 1.1373905564129203 1.0556265495257529 0.8603434661692895 1.0 19.05037577604855 1.460370377491103 3.7670994301935 0.9316862274074837 1.1300550654918202 0.44280831715180746 0.08601369937227347 0.18194235041940893 4.9601812383213195 0.05910244097140287 0.02165970748674711 28.86492128375724 -1.460370377491103 0.19836883808433647 SRTS(ph)PAPWK ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.287)RT(0.196)S(0.516)PAPWK 68.108 0.035733 6126000000.0 4789000.0 5960000.0 5613000.0 4434700.0 5536900.0 6528900.0 6530400.0 5971900.0 6817600.0 5609000.0 True False 4763216.556107922 6158374.997103926 6403261.6109294025 4996132.565299962 6241991.395222524 6077572.51037746 6214499.603449392 6417553.502693745 5137493.831159609 5251028.817893498 0.9071015835747659 1.1727939820323476 1.2194299123077628 0.9514578454178452 1.188717794492425 1.1574060476810597 1.183482288703645 1.2221516440407216 0.9783785253002222 1.0 22.324168682590393 4.744674295817751 24.23830789407921 1.1343843619155136 0.9071014282122609 0.28164174979600753 0.09907722272800404 523.0253297020848 2073495.5955324043 0.022661042389502877 0.2045756359871715 55548.75067200667 -4.744674295817751 -0.2272829337032527 SRTS(ph)PITR ddPTM_BT-474_Trastuzumab_2h_R1 4 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.364)RT(0.215)S(0.422)PITR;S(0.025)RT(0.101)S(0.874)PITR;S(0.001)RT(0.008)S(0.991)PITR;S(0.075)RT(0.042)S(0.882)PITR 98.182 0.004665399999999999 11949500000.0 586147.0 695420.0 731490.0 786200.0 823940.0 878960.0 788230.0 627490.0 829030.0 737400.0 True False 582991.2496790537 718566.6343097335 834477.4337749411 885732.8393890979 928863.8751250072 818199.5640492841 750100.3035689883 674316.4901296569 624726.6649328576 690338.5006800982 0.8445005589355228 1.0408902786123415 1.2087945738979387 1.2830413464068768 1.345519443301977 1.1852150260245105 1.0865688395330912 0.9767910807022105 0.9049570092315552 1.0 19.396944421115066 1.8399049998222479 2.604792328081436 0.9507703602962443 1.1626296933620257 0.2941673106656827 0.13110672989942576 0.35836518534283357 4.471008776000694 0.08291642416911141 0.040666739761377954 69.16796522169122 -1.8399049998222479 0.21185933306578142 SRTS(ph)PVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.067)RT(0.127)S(0.804)PVS(0.001)R;S(0.093)RT(0.093)S(0.812)PVS(0.001)R;S(0.268)RT(0.077)S(0.655)PVSR 81.625 0.013551 4388910000.0 732707.0 574410.0 450480.0 445380.0 429750.0 492760.0 509000.0 413490.0 695180.0 413240.0 True False 728762.1869233998 593528.889611822 513903.66835764697 501765.0623341594 484476.1151721864 458696.6610322712 484377.7254311741 444346.7234596758 523862.20393474796 386866.66940743616 1.8837554241611074 1.5341949476312613 1.3283741117961736 1.2969973947425173 1.252307716025934 1.1856711815852659 1.2520533913482277 1.148578460223213 1.3541156304241664 1.0 18.561476912827743 7.99999998178455 0.5909281662525249 1.1901638640012577 43.384362762177965 0.8664105075941289 0.08369538334600868 48.79119580475158 0.38872030854956263 0.0328641117984925 2650.863724751284 99999995.80573782 -7.99999998178455 42.19419889817671 SRTS(ph)PVTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.123)RT(0.172)S(0.705)PVTR;S(0.2)RT(0.125)S(0.675)PVTR;S(0.288)RT(0.173)S(0.539)PVTR 96.171 0.0055292 9260126000.0 259210.0 331433.0 284999.0 275824.0 321506.0 271907.0 307316.0 290749.0 283732.0 286903.0 True False 257814.44216093852 342464.547049521 325124.38194428396 310743.2901191285 362447.8833846401 253110.70909023003 292449.9510188741 312446.16677350685 213810.0504140137 268592.6049099838 0.9598717069941017 1.2750334178571099 1.2104740636967508 1.1569316669134322 1.3494335910927666 0.9423591880910407 1.0888235404578093 1.1632716651980055 0.7960384854440429 1.0 18.035060058403346 2.7231406984901687 24.945201605828547 1.0284940656164476 1.1943151486614607 0.33865403413644735 0.13087052093835552 1052.8739250579154 1703259.4691867786 0.041633711173538174 0.03938516177625368 528.6164800483674 -2.7231406984901687 0.16582108304501308 SRTS(ph)VQT(ph)EDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.218)RT(0.347)S(0.438)VQT(0.996)EDDQLIAGQSAR 147.22 2.465e-07 317530000.0 130940.0 131560.0 145180.0 142220.0 126290.0 178970.0 168620.0 137560.0 195220.0 177670.0 True False 130235.03358880164 135938.8950703006 165620.0820728183 160225.03741785476 142372.28292052454 166598.22515006427 160463.20640904654 147825.4257155265 147110.64681397844 166330.94848906013 0.7829873801108482 0.8172796241779475 0.995726192733828 0.9632905894743518 0.8559578612027731 1.0016068967527214 0.9647224877070937 0.8887427568853744 0.8844454273261969 1.0 17.34369710414189 4.351356651537706 5.990628388107513 0.938179370130084 0.7922217806398139 0.5731781457991415 0.049810846518574155 0.14104055719651126 6.718971296991367 0.012235767226870212 0.03448443544172817 22457.254024974918 -4.351356651537706 -0.14595758949027016 SRTS(ph)VQTEDDQLIAGQS(ph)AR ddPTM_BT-474_Trastuzumab_2h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 S(0.001)RT(0.387)S(0.612)VQT(0.067)EDDQLIAGQS(0.933)AR 201.15 7.3341e-15 195550000.0 321790.0 339020.0 325210.0 312190.0 316080.0 430360.0 343440.0 325580.0 462790.0 363840.0 True False 320057.5183942303 350304.0757580821 370996.74122400663 351713.22199043777 356330.9144470616 400610.2261584709 326826.4951317931 349876.4328617409 348741.60556828714 340619.4197009047 0.9396337962036057 1.0284324835785388 1.0891825884436537 1.0325694944207071 1.0461262448275939 1.1761226841095662 0.9595063470508433 1.0271769976267493 1.0238453399824192 1.0 18.377801164026135 SRTS(ph)VQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SRTSVQTEDDQLIAGQSAR 19 1 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 SRT(0.107)S(0.729)VQT(0.128)EDDQLIAGQS(0.035)AR;S(0.016)RT(0.047)S(0.937)VQTEDDQLIAGQSAR;S(0.026)RT(0.097)S(0.877)VQTEDDQLIAGQSAR 318.93 4.693899999999998e-62 10272900000.0 1943030.0 2651250.0 2477600.0 2859870.0 3248390.0 3235310.0 3175600.0 2599210.0 2760420.0 2922860.0 True False 1932568.942370927 2739495.253535534 2826424.5443147463 3221929.248770926 3662053.211784012 3011660.6348005487 3021984.096029941 2793176.248720944 2080151.4787329293 2736320.572413659 0.7062655457310847 1.0011602007286282 1.0329288800477088 1.1774677577082717 1.3383129333248336 1.100624197750345 1.1043969505971676 1.0207781489056793 0.7602002118114637 1.0 21.38380582774209 4.803689211840724 1.980307520934672 1.0814179939812372 0.5529428538965916 0.37517847562983964 0.13836663887424913 1.0095727922629647 3.688922416910363 0.03723563668116987 1.025591426542596 63633.998274281075 -4.803689211840724 -0.5284751400846456 SRWDETPASQMGGST(ph)PVLTPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 SRWDETPASQMGGS(0.206)T(0.794)PVLTPGK;SRWDETPASQMGGS(0.037)T(0.963)PVLTPGK 225.81 9.345299999999997e-26 1436350000.0 953670.0 903450.0 819130.0 770800.0 850710.0 1021780.0 1009100.0 893270.0 1259350.0 1013030.0 True False 948535.5466826977 933520.7871029425 934456.3839944048 868383.200968095 959042.8759467854 951146.7536114005 960285.9778636515 959930.34333315 949000.0669254363 948377.5581013833 1.000166588274854 0.9843345396867219 0.9853210633380569 0.9156513601044778 1.011245856414774 1.002919929395589 1.0125566233200503 1.0121816307577913 1.0006563934571577 1.0 19.85510199849786 SRWS(ph)GSHQFEQLSGSILWMAPEVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRWSGSHQFEQLSGSILWMAPEVIR 25 1 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y492;H7C4S5 P15056 BRAF Serine/threonine-protein kinase B-raf 1 S(0.018)RWS(0.915)GS(0.067)HQFEQLSGSILWMAPEVIR;S(0.189)RWS(0.803)GS(0.008)HQFEQLSGSILWMAPEVIR 235.65 1.2336e-38 507136000.0 132425.0 143521.0 123279.0 145689.0 139079.0 148045.0 141720.0 114373.0 209669.0 173898.0 True False 131712.03851380074 148298.00972472347 140635.61163972295 164133.21246217046 156789.88626418269 137810.99761044426 134864.46217702577 122908.09403432603 157998.88437065898 162799.68075843182 0.8090435921016328 0.9109232219243325 0.8638568023263097 1.0081912427440038 0.9630847280151201 0.8465065592784136 0.8284074117881265 0.7549652030135219 0.9705110208729683 1.0 17.312738344995033 2.706632256487417 24.136164096158403 0.8517330236703052 0.913792786975609 0.0 0.08416752175329563 1010.3299453260047 763754.8696355846 0.02741055043255372 0.025845313317903497 508.8997722214877 -2.706632256487417 0.06205976330530372 SRWS(ph)GSQQVEQPTGSVLWMAPEVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 SRWSGSQQVEQPTGSVLWMAPEVIR 25 1 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 S(0.275)RWS(0.683)GS(0.043)QQVEQPTGSVLWMAPEVIR;S(0.096)RWS(0.873)GS(0.032)QQVEQPTGSVLWMAPEVIR 236.48 1.1699e-38 809700000.0 91288.0 110729.0 107507.0 123356.0 98824.0 122427.0 134329.0 113811.0 134539.0 136030.0 True False 90796.51555105034 114414.54782790593 122643.05113240454 138972.85695202427 111408.65062426115 113963.90965215901 127830.99308338741 122304.15474054802 101383.66618023695 127348.44893885775 0.7129770037061335 0.8984369168315383 0.9630510002621834 1.0912803266158948 0.8748331962625664 0.8948982936327329 1.0037891638928507 0.9603898261789464 0.7961122968126062 1.0 16.958421862617076 4.7135588375855555 2.847834229476857 0.9502236880916309 0.6777779660697095 0.4597844860446828 0.07623491685419384 0.3358974609250346 3.9620793460955364 0.01857559279376861 0.2059447950626059 51708.13066478176 -4.7135588375855555 -0.2724457220219214 SS(ph)AIGIENIQEVQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSAIGIENIQEVQEK 15 0 J3KPC5;P47736-3;P47736;P47736-4;F2Z357;X6R8W7;P47736-2;A0A0A0MQY8 J3KPC5 RAP1GAP Rap1 GTPase-activating protein 1 1 S(0.264)S(0.736)AIGIENIQEVQEK;S(0.267)S(0.733)AIGIENIQEVQEK 328.64 8.797299999999997e-69 246930000.0 479730.0 320410.0 323310.0 283400.0 262930.0 380130.0 365620.0 366900.0 489820.0 382400.0 True False 477147.18698301393 331074.6531580647 368829.23773910303 319278.4109423433 296412.5769917934 353852.50782976975 347933.5637959645 394279.9410804498 369110.4242517313 357994.9046108892 1.332832341570988 0.9248026966135605 1.0302639311025665 0.8918518303755537 0.8279798767358695 0.988428894579877 0.9718952960353988 1.1013562930707057 1.031049379467911 1.0 18.449579528001998 4.743822552853379 24.946124277612164 0.9780189037469363 1.3328324947524626 0.6810620887084446 0.07358761320437841 362.77728068817254 1719823.6506721554 0.019658901205049602 0.16837566411321395 55439.91463052469 -4.743822552853379 0.35481359100552623 SS(ph)DEENGPPSS(ph)PDLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 S(0.337)S(0.663)DEENGPPS(0.01)S(0.99)PDLDR 310.72 1.7361999999999992e-57 748930000.0 853650.0 870990.0 695990.0 767180.0 819690.0 989840.0 883540.0 916110.0 1041600.0 906720.0 True False 849054.0432494318 899980.3756254264 793979.3423464732 864304.9093392619 924072.6628167297 921414.6906327297 840799.794749431 984474.780112321 784911.6367249251 848852.353317953 1.000237603077485 1.0602319379897185 0.9353562362677151 1.0182040562895405 1.08861412612542 1.085482872293572 0.9905135933981375 1.1597715153456944 0.9246739243366653 1.0 19.69515411224341 3.4614906312541542 19.858058876657168 1.055194702474529 1.0001058563865364 0.055036895946431685 0.06711482089238732 42.696172861774414 54241.240389963874 0.01779076731113303 0.024114894249155867 2893.9473871905307 -3.4614906312541542 -0.05508884608799258 SS(ph)DSWEVWGSASTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDSWEVWGSASTNR 15 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 S(0.227)S(0.773)DSWEVWGSASTNR;S(0.187)S(0.813)DSWEVWGSASTNR 190.41 2.286e-07 504160000.0 593150.0 551180.0 504440.0 490240.0 510510.0 627450.0 548700.0 509670.0 541920.0 630690.0 True False 589956.5463051609 569525.6931046541 575460.7673289195 552304.3337345601 575520.4224701643 584075.8583584278 522157.2847624469 547704.1634518193 408371.0773559633 590438.8242391257 0.9991831872936433 0.9645803590889852 0.9746323305729296 0.9354133079685131 0.9747333658348328 0.9892233274312582 0.8843545907322906 0.9276222039728218 0.6916399474276007 1.0 19.17142806320588 1.890313493289877 1.8204781294322905 0.854792961095435 0.9701347937006479 0.27048030195128847 0.07501937055919096 0.4189192902721723 2.5961067061703513 0.045578028167575196 0.020961195635069877 77.68076489943806 -1.890313493289877 0.11534183260521291 SS(ph)FSITR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSFSITR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.102)S(0.898)FSITR 149.82 0.0020883000000000004 111470000.0 102650.0 97871.0 88901.0 104280.0 101330.0 103880.0 84945.0 95582.0 129460.0 110540.0 True False 102097.3438054871 101128.57707073104 101417.48805865562 117481.83730793082 114233.77487003522 96699.02010721716 80835.88582858772 102714.81419556162 97556.31767512373 103485.24256194479 0.9865884379057533 0.9772270380503474 0.9800188466287699 1.1352520842535385 1.1038653632343425 0.93442328310082 0.7811344287104561 0.992555186156886 0.9427075325907258 1.0 16.659065522348047 2.6206788501382228 7.4490575260385485 0.9214674528217166 1.03537690521696 0.3382342651956982 0.07409280205748153 0.3170992045657508 18.31680991364683 0.025329409687144897 0.02384449217426664 417.521505796065 -2.6206788501382228 0.1139094523952433 SS(ph)FSQHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 S(0.376)S(0.624)FSQHAR 162.38 0.00022033 2349500000.0 1008900.0 1431700.0 1469700.0 1505500.0 1238000.0 1339500.0 1713000.0 1251400.0 1460400.0 1456000.0 True False 1003468.1944993273 1479353.2690190757 1676620.9851385958 1696096.1456376065 1395651.9617991103 1246903.5178438346 1630135.6457045218 1344785.8224804443 1100503.9883574136 1363076.833455684 0.736178746399296 1.0853043883583633 1.2300267629727168 1.2443144098764038 1.0238982334259483 0.9147712639812638 1.1959235207393175 0.986581085874031 0.807367538899041 1.0 20.378435455107304 1.4810715426418315 7.055286677160735 0.9007620296379688 1.0699574933725813 0.14781811517770305 0.15111127771839228 0.21706877197563534 28.60969525009924 0.08666668683832714 0.03870323952982061 30.274121017662768 -1.4810715426418315 0.16919546373461247 SS(ph)GFISELPSEEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSGFISELPSEEGK 14 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 S(0.182)S(0.818)GFISELPSEEGK;S(0.183)S(0.817)GFISELPSEEGK 250.52 1.2331e-12 0.0 292110.0 198842.0 201334.0 180568.0 203210.0 387160.0 396430.0 324530.0 529290.0 355800.0 True False 290537.3122164722 205460.33576747266 229680.07717350082 203427.89028594573 229087.58897996502 360396.5404766092 377253.16639033536 348748.0765299492 398853.5716226339 333092.5393842947 0.8722420284570654 0.6168265916350335 0.6895383415012933 0.6107248474011824 0.6877595919843243 1.0819712177966658 1.1325776527077713 1.0470005637910504 1.1974257134665798 1.0 18.345563515288408 2.7348549014181045 6.794289944651011 1.0949233094587685 0.6853311813207932 0.8513730798486101 0.08276119870662803 0.046738154452948835 13.454226127838725 0.024901907964774463 0.02473830220074225 543.0688608781373 -2.7348549014181045 -0.4095921281379753 SS(ph)GS(ph)ETEQVVDFSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 2 S(0.14)S(0.86)GS(0.999)ET(0.001)EQVVDFSDR;S(0.141)S(0.859)GS(0.998)ET(0.002)EQVVDFSDR 238.83 1.2855e-17 995870000.0 1183470.0 1113640.0 943010.0 1036050.0 1083130.0 1335760.0 1180860.0 1103390.0 1454430.0 1264190.0 True False 1177098.3290158776 1150706.8341904045 1075777.6112101432 1167213.8237713997 1221060.1852855156 1243422.0552408192 1123737.2904767336 1185730.5647008903 1096005.2148635122 1183508.3118724884 0.9945839139511667 0.9722845396580384 0.90897343129606 0.9862320459116097 1.0317292857484157 1.0506238467168332 0.9494967455689534 1.0018776824852933 0.9260646535971234 1.0 20.17463840759367 6.410719872352429 11.033945492313919 0.9827468660183714 0.9974763866005828 0.0 0.04206293684866255 0.0 0.0 0.0094670611489275 0.0 2574659.9199596564 -6.410719872352429 0.014729520582211442 SS(ph)GSETEQVVDFSDR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 S(0.002)S(0.991)GS(0.007)ETEQVVDFSDR;S(0.022)S(0.947)GS(0.031)ETEQVVDFSDR;S(0.009)S(0.969)GS(0.022)ETEQVVDFSDR;S(0.036)S(0.908)GS(0.056)ETEQVVDFSDR;S(0.012)S(0.699)GS(0.289)ETEQVVDFSDR 484.2 1.2714999999999986e-223 9103980000.0 3156590.0 3180900.0 2952580.0 2898640.0 3205660.0 3566010.0 3391030.0 3217840.0 3981170.0 3497630.0 True False 3139595.2701701215 3286774.3336053416 3368277.5997145744 3265607.526795745 3613881.7995645623 3319500.1221846133 3226992.923907423 3457971.560660431 3000063.998444862 3274408.258928307 0.9588282895419068 1.0037765830339929 1.0286675739136422 0.9973122679163281 1.103674775346237 1.0137709960672603 0.985519418694478 1.0560599922845917 0.9162156216362477 1.0 21.64280278008291 4.698783884369208 2.9822942854578693 1.0178996833078802 0.9517162229558598 0.10007043948764383 0.045929944218166964 0.6878280827485791 9.372492894170598 0.01073548912108807 0.10319536992698246 49978.57673781864 -4.698783884369208 -0.06618346035202038 SS(ph)IDSQASLSGPLSGGAPGAGAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSIDSQASLSGPLSGGAPGAGAR 23 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 S(0.247)S(0.753)IDSQASLSGPLSGGAPGAGAR 275.63 1.0306e-51 122470000.0 52727.0 48905.0 46594.0 40312.0 42439.0 62134.0 59470.0 50213.0 66318.0 61431.0 True False 52443.1236905204 50532.77336130323 53154.03019769185 45415.495066717536 47843.3550943396 57838.82282770339 56593.20890253826 53960.14903644759 49974.81751567165 57510.4209862749 0.9118890592547769 0.8786715954202994 0.9242504103800123 0.7896915774196147 0.8319075790761055 1.0057103014687871 0.9840513759418396 0.9382673280956404 0.8689697738014881 1.0 15.811535778093711 2.7442742236783086 24.998531437583708 0.9562634293622868 0.866769124355546 0.4514857810400118 0.05070695046804196 475.83392769624425 2081898.5321116718 0.01638011151732849 0.016944896414396306 554.9760271723502 -2.7442742236783086 -0.08949430500674083 SS(ph)KASLGS(ph)LEGEAEAEASSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 S(0.351)S(0.417)KAS(0.336)LGS(0.896)LEGEAEAEASSPK 143.92 7.540199999999999e-08 372590000.0 418800.0 310570.0 240380.0 293630.0 289980.0 500740.0 464500.0 496600.0 907620.0 560360.0 True False 416545.2273330546 320907.13470647065 274223.41457958485 330803.5278934376 326907.234153882 466125.02241517097 442030.36043768254 533658.813683704 683949.2124849054 524597.3450516673 0.7940284701441431 0.6117208516845709 0.5227312283720703 0.6305855929576939 0.6231583846877553 0.88853866076898 0.8426088401079255 1.0172731881270658 1.3037603391178878 1.0 19.00085098068537 2.110712024111497 1.0899944935775916 1.1374791373660533 0.6263470753480915 0.7673510085576241 0.10972281728920412 0.23144482399892516 0.5137377825124633 0.08043348191948547 0.04076080276875839 129.03633641355327 -2.110712024111497 -0.5111320620179618 SS(ph)KS(ph)FSLDEPPLFIPDNIATIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSKSFSLDEPPLFIPDNIATIR 22 1 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 2 S(0.541)S(0.602)KS(0.833)FS(0.024)LDEPPLFIPDNIATIR 100.68 0.00046598 33810000.0 32107.0 20026.0 19934.0 19218.0 22372.0 29158.0 29071.0 25991.0 50498.0 28254.0 True False 31934.139479423065 20692.553304027373 22740.533930565918 21650.996829534062 25220.941590767095 27142.37609054907 27664.724667995426 27930.580399623796 38053.44453853233 26450.805530533613 1.207303098673488 0.7823033321288013 0.8597293532068532 0.8185382787129538 0.9535037245521004 1.0261455387140153 1.045893465741923 1.0559444160361013 1.438649741483493 1.0 14.691024038267207 2.0379178667184816 1.2072373059601493 1.187985746935171 0.9103882594561205 0.31474051252211455 0.1526240043147296 0.5267555283486984 1.4262259665988757 0.10761889800331456 0.05153298394733351 109.1233944002991 -2.0379178667184816 -0.27759748747905044 SS(ph)LETLEDIEENAPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLETLEDIEENAPLR 16 0 Q8TDN4-2;Q8TDN4;V9GYB4 Q8TDN4-2 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 S(0.21)S(0.79)LETLEDIEENAPLR 185.74 1.692e-09 42002000.0 113010.0 99914.0 92495.0 92617.0 95996.0 116590.0 103930.0 88830.0 119830.0 107530.0 True False 112401.56671659125 103239.57709071152 105517.49201904766 104342.30270376494 108220.52158713041 108530.40772333881 98902.50884884477 95458.94566960029 90299.50213973493 100667.34333893542 1.1165643493555606 1.0255518191546555 1.0481799610404174 1.036505973466056 1.0750310676498565 1.0781093860590854 0.982468649399551 0.9482612980875134 0.8970088923048942 1.0 16.619236220899573 2.0756956421559374 3.4910417915125165 0.945948463412869 1.0601645635984833 0.7137185158793565 0.033372511623637136 0.12339897706870352 2.9868960704172514 0.013883366038474669 0.009271466217368107 119.04074663743269 -2.0756956421559374 0.11421610018561434 SS(ph)LETLEDIEENAPLRR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSLETLEDIEENAPLRR 17 1 Q8TDN4-2;Q8TDN4;V9GYB4 Q8TDN4-2 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 S(0.083)S(0.917)LETLEDIEENAPLRR;S(0.107)S(0.893)LETLEDIEENAPLRR;S(0.242)S(0.758)LETLEDIEENAPLRR;S(0.148)S(0.852)LETLEDIEENAPLRR;S(0.181)S(0.819)LETLEDIEENAPLRR 329.59 3.539599999999999e-72 1479370000.0 214361.0 197573.0 188233.0 208608.0 205250.0 241273.0 225605.0 191147.0 258714.0 236475.0 True False 213206.9041937459 204149.0978695992 214734.57024943418 235017.7514109401 231387.37088793775 224594.36540555098 214691.62425520644 205411.35976479863 194957.401289989 221382.96304356697 0.9630682563038419 0.922153606867317 0.9699688146606638 1.0615891493180976 1.0451905047562398 1.0145060953102882 0.9697748250526229 0.9278553188592692 0.880634167190284 1.0 17.75618467542574 -0.5160952950053133 5.670861737560639 0.9999999993493427 0.9736647478966441 0.02300616163016378 0.05297387787611915 4.2191199993085567e-10 0.0 0.0566280696247436 0.013347363912941109 0.3047226279069183 0.5160952950053133 -0.02633525145269855 SS(ph)LGSLQTPEAVTTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.002)S(0.998)LGSLQTPEAVTTR;S(0.011)S(0.989)LGSLQTPEAVTTR 281.86 9.134699999999999e-34 577950000.0 441580.0 365550.0 407790.0 422620.0 471680.0 539950.0 523880.0 448550.0 605920.0 496050.0 True False 439202.58234415046 377717.1107703585 465203.28742577904 476123.64866779465 531745.6521336058 502624.5274055825 498537.92298405425 482023.07869074866 456599.1349120263 464391.66431022895 0.9457589704942435 0.813358937722084 1.0017477124977159 1.025263124339218 1.14503703016164 1.0823289176650956 1.073529008589212 1.0379666900496762 0.983219919742149 1.0 18.82498255093352 4.061176542415438 4.522339236235425 1.0544833505732525 0.8804719219417604 0.6174261067102853 0.05255307773252698 0.12071528529490094 4.9903248136779155 0.013321498859585045 0.030051113797095422 11512.682889250165 -4.061176542415438 -0.1740114286314921 SS(ph)LPNGEGLQLK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSLPNGEGLQLK 12 0 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 S(0.127)S(0.873)LPNGEGLQLK;S(0.083)S(0.917)LPNGEGLQLK;S(0.194)S(0.806)LPNGEGLQLK;S(0.056)S(0.944)LPNGEGLQLK 148.18 6.8492e-05 296120000.0 3962230.0 3104230.0 3010230.0 2772320.0 2729610.0 3615700.0 3458890.0 3352450.0 4112810.0 3410750.0 True False 3940897.793925135 3207552.419003338 3434044.2186117894 3123295.4277476277 3077209.6538339774 3365755.1694422867 3291570.276457044 3602626.842396163 3099263.084330493 3193073.0149100143 1.2342022169625193 1.0045346298145117 1.0754668629801332 0.9781471996297733 0.9637141523118906 1.0540802398585736 1.0308471685699319 1.1282632202814473 0.9706208000438834 1.0 21.606514112224104 4.743160016524545 24.779212533021852 1.031040000622551 1.2342023101424182 0.6167757410583083 0.04960232602268799 303.1366287442663 1633080.0815218796 0.012406036003458404 0.09927001305650796 55355.40295493655 -4.743160016524545 0.20316230951986713 SS(ph)LPSLDDQEQASSGWGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLPSLDDQEQASSGWGSR 19 0 R4GMM2;Q9NPB6-2;Q9NPB6 R4GMM2 PARD6A Partitioning defective 6 homolog alpha 1 S(0.023)S(0.942)LPS(0.035)LDDQEQASSGWGSR 230.67 5.4138000000000006e-20 55668000.0 35410.0 38302.0 33827.0 33677.0 32695.0 37826.0 39154.0 36980.0 48857.0 42660.0 True False 35219.356494420834 39576.85891595208 38589.54757044515 37940.50474701938 36858.51445155239 35211.177652826314 37259.971437194916 39739.635380635096 36816.8470002589 39937.402276936504 0.8818639792894016 0.9909722881201856 0.9662508167871068 0.9499993135239466 0.9229071584567697 0.8816591877624564 0.9329593141492886 0.9950480781165976 0.9218638394395597 1.0 15.285452875474457 0.6119572224613007 0.747802760142635 0.9989918790552677 0.9381642859499928 0.18120126367213185 0.03761737063671428 2.4183589930237255 2.395575889233956 0.04013049977147357 0.013864517915295704 4.092203499810983 -0.6119572224613007 -0.06082759310527486 SS(ph)LS(ph)GDEEDELFK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 2 S(0.131)S(0.869)LS(1)GDEEDELFK;S(0.116)S(0.884)LS(1)GDEEDELFK;S(0.108)S(0.892)LS(1)GDEEDELFK;S(0.024)S(0.976)LS(1)GDEEDELFK 337.85 1.4977999999999994e-62 2056140000.0 3972260.0 2970460.0 2530170.0 2385750.0 2530550.0 3860060.0 3571470.0 3251040.0 5404890.0 3296270.0 True False 3950873.7935195775 3069329.9654190075 2886395.943368117 2687785.7053835387 2852800.5427550357 3593223.137803858 3398704.351759681 3493649.113246617 4072927.2813154547 3085899.2265212703 1.2802990323094223 0.9946306538593804 0.9353500330021945 0.8709894614457244 0.9244632871472583 1.164400673528958 1.1013659560072657 1.1321332476514478 1.3198510328241857 1.0 21.557259519187504 2.727437743365571 24.444209705187255 1.146424164488927 0.9898981971829921 0.2383763965682728 0.12642235125387322 762.4684799535738 1675637.0179880206 0.04126904398400571 0.03925962973524712 533.8727367918884 -2.727437743365571 -0.15652596730593493 SS(ph)LSGDEEDELFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 S(0.204)S(0.796)LSGDEEDELFK;S(0.097)S(0.903)LSGDEEDELFK 234.83 1.1923e-16 95321000.0 360447.0 316052.0 290228.0 250853.0 299248.0 399613.0 399394.0 336705.0 515044.0 376070.0 True False 358506.3934014263 326571.5997625317 331089.57969300146 282610.96407946234 337355.4590181424 371988.6938978181 380073.78638675547 361831.63685334666 388118.3074360143 352068.8906302745 1.0182847815938165 0.9275786883013223 0.9404113470528003 0.8027149560801342 0.9582086574426044 1.0565792769474267 1.0795437952678708 1.0277296474721038 1.1023930763698095 1.0 18.425498228430634 2.8271171361777996 4.240982088630321 1.054962479871021 0.9198543734947693 0.5575053727846109 0.05558739062597247 0.16742180024217315 5.430540991827272 0.017430099804000895 0.018459680154455132 671.6099724660853 -2.8271171361777996 -0.1351081063762518 SS(ph)LSSHSHQSQIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLSSHSHQSQIYR 14 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 S(0.183)S(0.817)LS(0.001)SHSHQSQIYR 319.55 2.9016e-56 980380000.0 29832.0 78431.0 104010.0 94640.0 92283.0 96798.0 101360.0 45898.0 64816.0 86714.0 True False 29671.38782664677 81041.52842245923 118653.7039288735 106621.41429634231 104034.69304580541 90106.58209798227 96456.82956719812 49323.14182532151 48842.96528990278 81179.83828040956 0.3655019331789814 0.9982962535910385 1.461615426222242 1.3133977173993996 1.2815336326053168 1.1099625720703972 1.1881870130612864 0.607578714987712 0.6016637421867055 1.0 16.308833845573186 1.7456096139981672 9.419637978690796 0.7084723620197927 1.1277297190445725 0.2380737424726146 0.2963706180837295 0.13861368455136633 54.293237914617514 0.14541320978037142 0.07867890280977706 55.66851213802812 -1.7456096139981672 0.41925735702477984 SS(ph)LVTSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSLVTSK 7 0 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7 A6NMQ3 ENSA Alpha-endosulfine 1 S(0.004)S(0.996)LVTSK;S(0.185)S(0.815)LVTSK;S(0.05)S(0.95)LVTSK 121.64 0.0046349 945010000.0 3855790.0 2489930.0 2261560.0 2401270.0 1634030.0 2365750.0 2785420.0 2977910.0 4186380.0 3843340.0 True False 3835030.8550585397 2572805.814855527 2579967.9901680895 2705270.5357922395 1842114.034845396 2202211.270876483 2650678.5932622827 3200136.765720578 3154702.743617984 3598054.7507510767 1.0658622841294996 0.7150546595541567 0.7170452282944092 0.7518703085959232 0.5119749871679589 0.612056075693896 0.7366976816317112 0.889407468036045 0.8767800831711788 1.0 21.77878570923099 1.6916604427384192 3.1229204487153757 0.9250079485883146 0.715417926760406 0.2963248715816087 0.1357167236752867 0.2783605446151213 6.176821883724665 0.08404966197915013 0.037805382194260065 49.165498025539065 -1.6916604427384192 -0.20959002182790853 SS(ph)MEMEGIFNHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSMEMEGIFNHK 12 0 O75962-5;O75962;E7EPJ7;O75962-4;O75962-2;E7EWP2 O75962-5 TRIO Triple functional domain protein 1 S(0.411)S(0.589)MEMEGIFNHK;S(0.386)S(0.614)MEMEGIFNHK 148.85 4.3013e-05 568630000.0 510010.0 681370.0 685360.0 690510.0 690940.0 780770.0 753840.0 711810.0 893770.0 814450.0 True False 507264.1628274376 704048.9885531368 781852.7307440896 777928.4952004137 778927.1134777681 726797.2076348861 717373.8792515463 764928.8766979413 673512.3594044122 762471.1037142744 0.6652896881683374 0.9233779288466906 1.0254194905687577 1.0202727571062573 1.0215824700547085 0.9532127894347633 0.9408538576176291 1.0032234309886556 0.883328372870117 1.0 19.5403231374842 4.7188426074404894 3.220364756282805 0.9818441260563886 0.6269022998492305 0.8302345783239133 0.042618003256955334 0.11603835223274535 1.9491178741907351 0.010372386917407949 0.10053630348216995 52341.071305742844 -4.7188426074404894 -0.3549418262071581 SS(ph)MSLYTAASVIDTASK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSMSLYTAASVIDTASK 17 0 Q96PE2;A0A2R8Y4D7 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 S(0.03)S(0.969)MSLYTAASVIDTASK;S(0.226)S(0.774)MSLYTAASVIDTASK 289.59 6.2616999999999996e-46 207093000.0 302280.0 237810.0 252900.0 219670.0 222530.0 303950.0 270260.0 276640.0 407820.0 340930.0 True False 300652.5580664656 245725.36209081937 288506.1217537939 247480.1994767274 250867.87646135353 282938.6519213386 257186.491306541 297284.28154945624 307318.2255080252 319171.55551514233 0.9419779202479773 0.7698849031024054 0.9039217836568975 0.7753830039061432 0.7859969728707598 0.8864782811384181 0.8057938962995698 0.931424735107237 0.9628621980803211 1.0 18.283972559124322 1.5361437505203424 2.609415721968059 0.9818724535151435 0.8354737327183328 0.5277153952337074 0.05568159217667196 0.18432023058730274 2.686080648518798 0.03886562467024368 0.013971859328603122 34.367168364870906 -1.5361437505203424 -0.1463987207968107 SS(ph)PAPHSGPCPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPAPHSGPCPSR 13 0 P85299;P85299-5;P85299-2;P85299-4;P85299-3 P85299 PRR5 Proline-rich protein 5 1 S(0.409)S(0.591)PAPHSGPCPSR 168.5 1.9395e-05 163820000.0 137620.0 193610.0 204880.0 185030.0 187820.0 192990.0 189470.0 179460.0 208600.0 188390.0 True False 136879.06921101932 200054.1918102834 233725.32315111597 208454.7790284467 211737.76370364186 179649.0555495943 180304.61225431156 192852.2164794154 157193.32509679292 176366.7889112066 0.7761045605923703 1.1343076156532081 1.3252229889425897 1.1819389597969894 1.2005534886176508 1.0186104575507138 1.0223274652071117 1.0934724029959435 0.8912864268109643 1.0 17.428219391431785 2.7167378174641126 22.574626885557436 1.019125643003948 1.138658453617014 0.14519291993381 0.1393633374377741 475.954818744672 492349.7467833655 0.046302918360946604 0.043707755327246835 520.8801620652938 -2.7167378174641126 0.11953281061306598 SS(ph)PAS(ph)SPELPWRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPASSPELPWRPR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 S(0.419)S(0.581)PAS(0.5)S(0.5)PELPWRPR 83.41799999999998 0.0032794000000000005 0.0 31022.0 37148.0 28428.0 34032.0 31816.0 30504.0 28668.0 29742.0 35559.0 27004.0 True False 30854.980998868206 38384.44872355978 32430.415299394404 38340.44771062043 35867.579011793576 28395.330278692258 27281.21931760496 31961.499066815846 26795.96091618818 25280.581600712438 1.2205012323766584 1.5183372491113123 1.2828191934666755 1.516596742756106 1.418779819954094 1.1232071606252936 1.0791373295318547 1.2642707185943511 1.0599424229794239 1.0 14.625742033840247 2.7370526620633733 24.797751585532264 1.1310586392953677 1.3993808898062314 0.6328885878871147 0.1079758607243203 80.94613308879744 1331119.251755545 0.03254119540891971 0.03221853380734504 545.8240430918951 -2.7370526620633733 0.2683222505108638 SS(ph)PELTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.12)S(0.88)PELTR;S(0.33)S(0.67)PELTR 197.3 0.00044621 851910000.0 739150.0 725630.0 638440.0 628960.0 628290.0 693430.0 682780.0 713670.0 882670.0 740940.0 True False 735170.4985272853 749782.1558974017 728326.8025800391 708586.2715112787 708299.0073334114 645494.8162586413 649751.3229271066 766927.6793428301 665147.8056720333 693652.5748493506 1.059854061216383 1.0809188678644226 1.0499878887326544 1.0215290726271309 1.0211149399787662 0.9305736613157266 0.9367100281696805 1.1056366070714776 0.9589062735282025 1.0 19.40385372507252 3.659694635324444 1.783589748278615 0.998238266735759 1.070097619213053 0.31718815857752036 0.0470945298812574 0.521716144515392 3.236475168306411 0.015275147833216016 0.031028555583531674 4567.66911005041 -3.659694635324444 0.07185935247729391 SS(ph)PEQPIGQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPEQPIGQGR 11 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 S(0.109)S(0.891)PEQPIGQGR;S(0.182)S(0.818)PEQPIGQGR 81.615 0.022225 1625100000.0 1785120.0 1684020.0 1429840.0 1611740.0 1663140.0 1872640.0 1978130.0 1682300.0 2529170.0 1858630.0 True False 1775509.1122654767 1740071.587688414 1631149.0436079244 1815786.118744575 1874931.0207969085 1743188.8045203995 1882440.2947095647 1807841.7685463084 1905889.942641684 1740010.6421467985 1.0204012948305194 1.0000350259591173 0.9374362455596464 1.0435488581289858 1.0775399732519149 1.001826518928459 1.081855621519095 1.0389831675488035 1.0953323482494488 1.0 20.73066469914844 3.5760718363868085 8.89734475779429 1.0512270781371453 0.9875107342918031 0.3952711042638507 0.03540842797441188 0.32757113769249774 27.118446497341658 0.008849416029512589 0.013716317790376019 3767.661144844327 -3.5760718363868085 -0.0637163438453422 SS(ph)PEQPRPSTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPEQPRPSTSK 12 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-4;H3BVD2;H3BRN3;P29590-12;P29590-13;P29590-11;H3BT57;H3BUJ5 P29590-2;P29590-12 PML Protein PML 1 S(0.447)S(0.553)PEQPRPSTSK 215.34 1.096e-10 743950000.0 1196900.0 1118400.0 990610.0 951170.0 1016600.0 1241100.0 1314000.0 1162600.0 1486600.0 1194600.0 True False 1190456.0233880922 1155625.2679129231 1130079.2774635244 1071588.0244743421 1146057.984139721 1155305.6782351492 1250436.8000325414 1249359.11556318 1120247.3494194252 1118359.6052514862 1.0644662215964011 1.0333217173496327 1.0104793414899877 0.9581784065183341 1.0247669700856248 1.0330359508785683 1.1180990391291492 1.1171354094841757 1.0016879581121088 1.0 20.092952726462908 2.431332840032955 8.98367230501298 1.0759915725669675 1.016646302049953 0.11113290886348437 0.045661343446195365 0.42725773892286556 78.10259282132367 0.016195982800480856 0.01355717323240565 269.9807752179263 -2.431332840032955 -0.05934527051701455 SS(ph)PGAGPSDHHSASR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7-4;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 S(0.034)S(0.966)PGAGPSDHHSASR 237.97 6.0435e-18 512050000.0 98694.0 207360.0 236710.0 295920.0 253780.0 275020.0 296460.0 166440.0 193450.0 256320.0 True False 98162.64246993429 214261.8522482328 270036.7104797967 333383.44165863877 286097.378728092 256008.51472744372 282119.0972128212 178860.59796519484 145776.8395971934 239961.43815340777 0.4090767384348594 0.8929011840279721 1.1253337726170891 1.3893209018255097 1.19226397761956 1.0668735639256213 1.1756851408452635 0.7453722537320724 0.6075011081738809 1.0 17.872443057542597 -1.147327240090161 4.857334526406738 1.000001790639759 0.9751843797004822 0.0 0.2837318980833786 5.7591811433950474e-06 1.010997942946933e-06 0.2875492389616626 0.06777111549002657 0.07123160989983594 1.147327240090161 -0.024817410939276696 SS(ph)PGAVAGLSNAPGTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;Q9BWG4-2;Q9BWG4;U3KPY3 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 S(0.01)S(0.99)PGAVAGLSNAPGTPR 160.64 3.2156e-09 116200000.0 101580.0 103990.0 93226.0 94149.0 75050.0 103730.0 94525.0 83598.0 119810.0 105550.0 True False 101033.10456659894 107451.24428671766 106351.41046508179 106068.25374668562 84607.17264379897 96559.38925415513 89952.46462943373 89836.50726204264 90284.43087174847 98813.7086340987 1.0224604051723079 1.0874123213470637 1.0762819444303497 1.0734163833426196 0.8562290983034987 0.9771861676774912 0.9103237382023821 0.9091502434616829 0.9136832542746306 1.0 16.592423583368404 3.254313503402217 24.990608074082974 0.9234211340228524 1.0673148678950377 0.734393229912035 0.04034015159815579 107.78370977920312 170988.58417973178 0.010365583118843372 0.013988127927680918 1796.0296557986833 -3.254313503402217 0.1438937338721853 SS(ph)PGGQDEGGFMAQGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPGGQDEGGFMAQGK 16 0 F5GZ78;A0A1B0GTU4;P49023;A0A1B0GV30 F5GZ78 PXN Paxillin 1 S(0.001)S(0.999)PGGQDEGGFMAQGK;S(0.003)S(0.997)PGGQDEGGFMAQGK;S(0.007)S(0.993)PGGQDEGGFMAQGK;SS(1)PGGQDEGGFMAQGK 404.84 8.760399999999994e-140 1452540000.0 1922550.0 1604730.0 1530490.0 1476550.0 1521020.0 1919690.0 1945680.0 1770430.0 2378870.0 1923230.0 True False 1912199.2044153877 1658142.4679702318 1745969.6887424423 1663481.078605917 1714712.8812081427 1786986.3487641886 1851560.0251806062 1902548.476661378 1792629.3637248697 1800487.8148399582 1.0620450683724063 0.9209406774672456 0.9697203582006124 0.9239057687006789 0.9523601698801611 0.9925012177452754 1.0283657628336615 1.0566850055747208 0.995635376673856 1.0 20.779956405159254 2.441626941700247 3.228947923083998 1.0282881862981093 0.961542598682882 0.2785598838944223 0.040031240608158235 0.2583968826616462 5.595531143621979 0.014181359185304759 0.011947621680158716 276.4565867285313 -2.441626941700247 -0.0667455876152272 SS(ph)PGQTPEEGAQALAEFAALHGPALR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 S(0.128)S(0.872)PGQTPEEGAQALAEFAALHGPALR;S(0.416)S(0.584)PGQTPEEGAQALAEFAALHGPALR 358.72 1.5799999999999994e-110 21447200000.0 802983.0 957736.0 884875.0 958775.0 837801.0 930610.0 958550.0 866641.0 1008150.0 978950.0 True False 798659.8287477987 989613.6637963612 1009457.7085286203 1080155.8166945837 944489.9913144233 866279.1211203064 912181.2744834042 931314.1521338293 759704.9410178894 916472.5728787387 0.8714497873505613 1.079807179267655 1.1014598127664696 1.1786013555230554 1.0305709295234868 0.945231910649798 0.9953175921218732 1.0161942426803583 0.8289445461870993 1.0 19.805732180555044 2.9303195193202534 5.648686777217843 0.9672815592829639 1.0673169777786566 0.22679683471129408 0.08719854674512999 0.3408114446080062 20.317748892127458 0.027035556039492235 0.029047244894038104 851.764468250937 -2.9303195193202534 0.10003541849569275 SS(ph)PIMR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPIMR 6 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 S(0.075)S(0.925)PIMR;S(0.135)S(0.865)PIMR;S(0.157)S(0.843)PIMR 158.08 0.008778900000000001 808520000.0 733900.0 821890.0 683510.0 730410.0 724000.0 789200.0 775720.0 698640.0 839520.0 839810.0 True False 729948.7639439548 849246.1118070029 779742.266824577 822879.8311093746 816197.1085157959 734644.4615769708 738195.460061828 750776.0644220359 632631.5449916562 786212.6068024857 0.9284368599896217 1.0801736126578707 0.9917702413800976 1.0466377974477081 1.038137905006709 0.9344094144772853 0.9389260025529956 0.9549275322300292 0.8046570857780554 1.0 19.584559971785193 2.7071915039250536 7.9071895666434076 0.9272828931194222 1.0207777264568563 0.3670922463971572 0.05927864667123682 0.2779510135767056 62.488729742702596 0.0180846817920264 0.017238152027466536 509.55551210898045 -2.7071915039250536 0.09349483333743402 SS(ph)PKEELHPAAPSQLAPSFSSSSSSSSGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPKEELHPAAPSQLAPSFSSSSSSSSGPR 30 1 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 S(0.226)S(0.774)PKEELHPAAPSQLAPSFSSSSSSSSGPR 142.72 2.9026e-08 411980000.0 101240.0 89128.0 79126.0 78682.0 74894.0 132040.0 110210.0 83951.0 158660.0 114040.0 True False 100694.93508882154 92094.5716009863 90266.25302447885 88643.13313255286 84431.30696848345 122912.38558872689 104878.72125691512 90215.84991454032 119560.36893507748 106761.86956544398 0.9431732087371937 0.8626166999120713 0.8454914979654465 0.8302883182297167 0.7908376587272845 1.1512760697149724 0.9823612276911795 0.8450193901788025 1.119878936381759 1.0 16.70403694907184 2.767466284875269 24.979994019214878 0.9934276724079486 0.8530899252261867 0.46097426552491727 0.08703763536629588 783.1892371703482 676823.1775952288 0.02791120759836763 0.02960010123470064 585.4182873969779 -2.767466284875269 -0.14033774718176195 SS(ph)PKT(ph)PPRRPVPVADCEPPPVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPKTPPRRPVPVADCEPPPVDR 23 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 2 S(0.476)S(0.527)PKT(0.996)PPRRPVPVADCEPPPVDR 80.79 0.0203 132150000.0 29954.0 22169.0 21174.0 21622.0 19410.0 30698.0 31783.0 27648.0 44800.0 29584.0 True False 29792.73099220227 22906.8817635565 24155.115152292703 24359.342983046387 21881.74844791656 28575.919515319154 30245.534867149374 29711.23415369928 33759.640289244104 27695.923791863323 1.075708151715631 0.8270849506845561 0.8721541600785723 0.8795280910688678 0.7900710809417058 1.031773474323119 1.0920572678653562 1.0727655945683974 1.2189389508344264 1.0 14.757386039650719 2.54349968083262 4.840608553785248 1.095338990957547 0.8844915269007606 0.5674536569627617 0.08608233250758014 0.1504663792786442 6.878845545792231 0.027692594589831684 0.025549865145079564 349.54225271639024 -2.54349968083262 -0.21084746405678645 SS(ph)PLKLEFDFTEDTGNIEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPLKLEFDFTEDTGNIEAR 20 1 O75410-3;E7ET87;E7EVI4;O75410-2;O75410;O75410-9;O75410-7;H0YAY0;E5RFM9;R4GMT7 O75410-3 TACC1 Transforming acidic coiled-coil-containing protein 1 1 S(0.173)S(0.827)PLKLEFDFTEDTGNIEAR 175.07 1.5009e-12 131780000.0 67798.0 57966.0 57622.0 52206.0 52965.0 65563.0 54641.0 60235.0 76691.0 53598.0 True False 67432.98310106598 59895.36326881303 65734.6767405975 58815.27424719825 59709.77880184961 61030.78412870125 51997.806081109644 64730.04156713239 57791.53065675042 50177.32975244355 1.3438934162849134 1.1936737878303745 1.310047327446641 1.1721483494114002 1.1899752158282566 1.2163019520928007 1.0362808530794216 1.2900256328203705 1.151745837051763 1.0 15.614748077570157 -4.999999999929244 0.0649569184263182 0.29858901544123256 1.4902217575601533 0.4961693281012165 0.07455202408404567 312.5907894158367 1.4736534627058324 34.36285773332948 4.966969565326484 1.0000000001629213e-05 4.999999999929244 1.1916327421189208 SS(ph)PLLNYNTGVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPLLNYNTGVYR 13 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 S(0.286)S(0.714)PLLNYNTGVYR 92.102 0.0065318 89298000.0 111470.0 85189.0 94380.0 74565.0 85839.0 164990.0 91387.0 85754.0 182770.0 121810.0 True False 110869.85790548124 88024.4643671621 107667.88363433407 84004.92135467837 96770.08784238598 153584.6296446838 86966.26167775782 92153.3989299887 137728.78249252567 114035.98151321222 0.9722357490529062 0.7719007913038709 0.9441571178291622 0.7366527673105138 0.8485925806774784 1.3468085038307798 0.7626212404519174 0.808108087527723 1.207766010910937 1.0 16.799129580934164 2.9127698197448866 21.864931342619204 0.986774405834285 0.8483339437181436 0.17635301343057685 0.17425658083646053 53.22444725540971 13337.209714541998 0.05453733863086747 0.057845495213643565 818.0311088573179 -2.9127698197448866 -0.13844046211614136 SS(ph)PLPAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 S(0.499)S(0.501)PLPAK;S(0.105)S(0.895)PLPAK;S(0.151)S(0.849)PLPAK;S(0.158)S(0.842)PLPAK 117.89 0.005381800000000001 5238530000.0 11489400.0 9391100.0 9034200.0 7822500.0 8773200.0 10687800.0 10474000.0 10056400.0 13720000.0 10728600.0 True False 11427542.34699233 9703677.086460173 10306136.83332592 8812827.697941013 9890415.017169593 9948977.542375002 9967332.605434416 10806859.633364497 10338889.838581018 10043891.562783431 1.1377604263805345 0.9661272252695473 1.0261099265063962 0.8774315854420418 0.9847194143172026 0.9905500751561155 0.9923775603439711 1.0759633918598008 1.0293709140479643 1.0 23.25981502219891 1.7668685887872608 24.999999999895252 1.0426128906094883 0.9911602380477994 0.06580229881988564 0.06278595130304654 43.938322894263074 38826.63445377858 0.028456207384218453 0.01578286444098251 58.46131619131648 -1.7668685887872608 -0.05145265256168885 SS(ph)PLSFPSVPQEETLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPLSFPSVPQEETLR 16 0 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 S(0.159)S(0.841)PLSFPSVPQEETLR 249.3 1.5791e-20 296030000.0 107260.0 150590.0 155310.0 141280.0 126840.0 176750.0 147270.0 147650.0 191010.0 153730.0 True False 106682.52407770643 155602.29711642276 177176.29802128003 159166.03351423514 142992.32216041928 164531.68852474622 140145.98747396673 158668.39275150836 143938.1449028688 143918.8197851255 0.7412687530163615 1.081181025169196 1.2310849844781162 1.1059431542856877 0.9935623594878731 1.1432256654855582 0.9737849968698208 1.102485366322517 1.0001342779059206 1.0 17.134895735280534 4.739105124566499 24.539836384684122 1.0760268459032694 0.7412686362510671 0.6219954429699477 0.07679444233743278 21.827282563276487 983379.7209174805 0.017921091738404265 0.10644337094562309 54840.96959525044 -4.739105124566499 -0.33475820965220227 SS(ph)PNVANQPPS(ph)PGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPNVANQPPSPGGK 15 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 2 S(0.406)S(0.594)PNVANQPPS(1)PGGK;S(0.416)S(0.584)PNVANQPPS(1)PGGK;S(0.44)S(0.56)PNVANQPPS(1)PGGK 191.78 2.3581e-07 830400000.0 1486080.0 1149811.0 1058578.0 976160.0 1044670.0 1522010.0 1419381.0 1275132.0 1795310.0 1465248.0 True False 1478079.1103990087 1188081.7640595732 1207616.5810750783 1099741.7559120608 1177702.5322557974 1416797.03112616 1350720.1184680269 1370288.8248290971 1352879.9064214926 1371734.6181780733 1.0775255583781806 0.8661163378945511 0.880357297302174 0.8017161201142017 0.8585498365711673 1.03285067851385 0.9846803460147724 0.9989460108902869 0.9862548400348579 1.0 20.38756996769246 2.739641788216436 24.999474198292166 0.9990322886305236 0.8889436209255867 0.3649839984829869 0.06797370736273849 105.00089826423283 2427917.4953887938 0.0215157621382016 0.021681868067664957 549.0877922182793 -2.739641788216436 -0.11008866770493697 SS(ph)PPLPPPAEER ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 S(0.064)S(0.936)PPLPPPAEER;S(0.164)S(0.836)PPLPPPAEER;S(0.035)S(0.965)PPLPPPAEER;S(0.03)S(0.97)PPLPPPAEER 160.22 7.2009e-05 1663720000.0 721618.0 784883.0 673154.0 706631.0 644062.0 851720.0 820430.0 741513.0 994660.0 765804.0 True False 717732.8888672969 811007.3561832072 767928.2320405422 796090.4121474917 726079.4780454432 792842.601133221 780742.6665530415 796848.4653867201 749539.3707611506 716929.7330822092 1.0011202712734966 1.1312229340754798 1.0711345848903229 1.1104162310648724 1.012762401308002 1.105886064628187 1.089008630171452 1.1114735916460403 1.0454851238192433 1.0 19.451472200474818 0.9860205090327927 6.591128688700481 1.0000154892522786 1.082114721312178 0.2720591546963962 0.04022480363265654 0.1555764352805372 39.236681796410615 0.03553868847408525 0.008921248200237734 9.68323583094163 -0.9860205090327927 0.08209923205989944 SS(ph)PPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPPLR 6 0 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 S(0.097)S(0.903)PPLR;S(0.043)S(0.957)PPLR 89.14200000000002 0.052975 1013070000.0 661780.0 713490.0 688050.0 608510.0 661250.0 683720.0 699340.0 620030.0 905570.0 735460.0 True False 658217.0500106697 737238.0833361868 784921.4593621892 685547.3036080647 745456.2679641849 636456.0457037596 665510.2524617643 666299.7870485452 682404.4075163115 688522.3131410154 0.9559850675106025 1.0707540907032218 1.140008746821006 0.9956791385316494 1.0826900649935929 0.9243796948282893 0.9665776108630802 0.9677243196504529 0.9911144410167418 1.0 19.393143883388586 2.7439201093129197 24.99754609361717 0.9676980782702912 1.0523218508356122 0.38430193944881885 0.04990954075625372 448.03184464354655 2089695.5503742772 0.015186936034326505 0.015687575023734822 554.5236961101178 -2.7439201093129197 0.08462377256532105 SS(ph)PPLRTPDVLESSGPAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPPLRTPDVLESSGPAVR 19 1 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 S(0.123)S(0.877)PPLRTPDVLESSGPAVR;S(0.196)S(0.804)PPLRTPDVLESSGPAVR 191.8 5.3603e-15 1053180000.0 121251.0 161196.0 122176.0 162410.0 126523.0 129226.0 139586.0 130880.0 185719.0 129591.0 True False 120598.1980882525 166561.31141496028 139377.318827171 182971.08934772736 142634.95408942548 120292.9107852835 132833.69190969743 140646.93019517369 139951.04095710116 121320.39143156294 0.9940472221133755 1.3729045006330847 1.1488367057057676 1.5081643505159783 1.175688212066857 0.9915308495616003 1.0948999615174269 1.1593016518951218 1.1535656892110162 1.0 16.888462532271372 3.002274902205116 24.999776836713373 1.0952858653960207 1.2673407499153768 0.26712613538930163 0.13609242450131162 95.93584896219254 1054251.4688270306 0.037653151132138435 0.04473825952473887 1005.2518990298953 -3.002274902205116 0.17205488451935613 SS(ph)PPMLSADDAEYPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPPMLSADDAEYPR 15 0 A0A087X165;Q9C0H9;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 S(0.014)S(0.986)PPMLSADDAEYPR;S(0.134)S(0.866)PPMLSADDAEYPR 328.49 8.878899999999996e-69 1777330000.0 676200.0 689650.0 608440.0 573230.0 594120.0 701150.0 611530.0 594900.0 683170.0 627820.0 True False 672559.4143328823 712604.5833477722 694103.0633447146 645800.8592254046 669777.6603748688 652681.1508295655 581947.9576285385 639294.4588409902 514811.907508993 587751.9900962564 1.1442911732595529 1.2124239396128096 1.180945492385387 1.098764223868713 1.1395583029249787 1.1104703375358638 0.99012503136439 1.0876942479366045 0.8758998968675241 1.0 19.164847993210284 2.3088095985519663 0.6919165923710568 0.9636539930123026 1.1789819408535587 0.6838273510002065 0.05414362769403877 0.41288852907760176 0.38799512898576394 0.043547992619332114 0.030086718153239825 203.61492025509867 -2.3088095985519663 0.21532794784125608 SS(ph)PPSAGNSPSSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPPSAGNSPSSLK 14 0 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 1 S(0.004)S(0.996)PPSAGNSPSSLK;S(0.117)S(0.883)PPSAGNSPSSLK;S(0.034)S(0.966)PPSAGNSPSSLK 289.09 2.0929e-43 960520000.0 959870.0 994190.0 963210.0 858150.0 871830.0 1216680.0 1088880.0 1069910.0 1366210.0 1057300.0 True False 954702.1665715828 1027281.0131494539 1098821.595628595 966791.7020118978 982852.3827587368 1132573.7753566506 1036206.7144744551 1149752.1170928953 1029525.851776075 989822.208799929 0.9645188379123902 1.037843972398781 1.1101201668942324 0.9767326833210243 0.9929585071144823 1.144219401512313 1.0468614517457262 1.1615743785814496 1.0401118934523435 1.0 19.916809886985302 2.7511788325088045 24.971845447338538 1.0918071961167182 1.020623295322285 0.1992736827041901 0.05906036422592854 1068.7972722743318 2115182.2790720672 0.01766715850364376 0.018615387871223923 563.869796679661 -2.7511788325088045 -0.07118390079443326 SS(ph)PQKEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPQKEVK 8 1 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 1 S(0.024)S(0.976)PQKEVK 81.771 0.013323 265470000.0 520930.0 585950.0 548820.0 625640.0 594250.0 634920.0 722120.0 708570.0 1175200.0 780320.0 True False 518125.37076076336 605452.9915357457 626089.0855710445 704845.959851685 669924.2151042973 591029.4748409151 687188.2968337132 761447.0914455556 885587.7068732075 730519.309534438 0.709256229094021 0.8287980668459025 0.857046593292726 0.9648560286529392 0.9170520290986448 0.8090538704823284 0.9406846442863506 1.0423367069254172 1.212271455819005 1.0 19.478562882169754 1.7673157517378486 2.3560226566680185 1.1089607896967342 0.8566258259185321 0.6321898101323714 0.08081781147499702 0.17677812911753377 1.965536402135116 0.05157819232230984 0.02308580073440016 58.521540759023964 -1.7673157517378486 -0.2523349637782021 SS(ph)PQLAK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSPQLAK 7 0 Q13370-2;Q13370 Q13370-2 PDE3B cGMP-inhibited 3,5-cyclic phosphodiesterase B 1 S(0.047)S(0.953)PQLAK;S(0.421)S(0.579)PQLAK;S(0.148)S(0.852)PQLAK 88.294 0.019629 7096900000.0 10843100.0 9708200.0 8784900.0 7526300.0 7854500.0 10071800.0 10886800.0 9239500.0 13883700.0 10600100.0 True False 10784721.954381665 10031331.568269176 10021737.560280355 8479128.808311075 8854724.017731106 9375560.172466986 10360163.892385304 9928998.407230338 10462248.167048622 9923592.5427978 1.0867759743127345 1.0108568570310326 1.0098900692525696 0.8544414506886352 0.8922901640250797 0.9447748012660439 1.0439932763971 1.0005447487297794 1.0542803044288391 1.0 23.242431069512907 2.240791279901868 24.994061348185717 1.022843823695349 0.9620257469424148 0.1685909797567987 0.06279153056414931 114.37058937004063 1281511.9190796404 0.02462554251374567 0.019687735652239777 174.0969969469607 -2.240791279901868 -0.06081807675293416 SS(ph)PQLDPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPQLDPLR 9 0 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.206)S(0.794)PQLDPLR;S(0.204)S(0.796)PQLDPLR 156.01 7.5464e-05 2457600000.0 1712620.0 1720810.0 1663030.0 1481590.0 1248360.0 1616030.0 1644040.0 1452420.0 1987970.0 1564900.0 True False 1703399.4442099687 1778086.1205983877 1897170.1686841121 1669159.142089155 1407331.2463905788 1504317.6498254354 1564511.504357306 1560806.9556393197 1498061.430933228 1465026.742221704 1.1627087718731837 1.2136885077619342 1.294973063636412 1.1393369786259913 0.9606181278686897 1.0268192425922185 1.0679064478950973 1.0653777918567995 1.0225488639623241 1.0 20.48249556879662 3.4580628324399396 5.95896093471996 1.033426606711051 1.2224689338249333 0.8209626218373398 0.04214696805188731 0.06699360213507037 8.188910694114753 0.012085050434034789 0.01693030943700948 2871.1959481067715 -3.4580628324399396 0.18904232711388236 SS(ph)PQLDPLRK ddPTM_BT-474_Trastuzumab_2h_R1 9 SSPQLDPLRK 10 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.175)S(0.825)PQLDPLRK;S(0.014)S(0.986)PQLDPLRK;S(0.1)S(0.9)PQLDPLRK;S(0.374)S(0.626)PQLDPLRK;S(0.066)S(0.934)PQLDPLRK;S(0.252)S(0.748)PQLDPLRK;S(0.099)S(0.901)PQLDPLRK;S(0.438)S(0.562)PQLDPLRK;S(0.248)S(0.752)PQLDPLRK 159.58 4.6803e-06 68217990000.0 16763720.0 15204320.0 14026170.0 12266160.0 12254910.0 16493000.0 16754550.0 15428140.0 20362810.0 15365890.0 True False 16673465.994144384 15710386.599994479 16000932.818344854 13819054.598322283 13815500.147957629 15352877.730345905 15944068.407903528 16579466.149307508 15344668.323174598 14385225.744799701 1.1590687758356442 1.0921195731442606 1.1123171163392576 0.960642178543351 0.9603950882002648 1.0672670698891196 1.1083641432368452 1.1525343045312326 1.0666963866536288 1.0 23.778084525424127 2.3555834903963504 5.470258711042604 1.1009893619641047 1.0527344395879448 0.0 0.06895532103886481 0.5613221419723443 24.719743925611358 0.025974407040237943 0.02153761159219732 226.76889842597515 -2.3555834903963504 -0.048254922376159914 SS(ph)PQLDPLRKS(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGR 33 2 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 2 S(0.465)S(0.535)PQLDPLRKS(0.827)PT(0.172)MEQAVQT(0.001)ASAHLPAPAAVGR;S(0.453)S(0.547)PQLDPLRKS(0.593)PT(0.407)MEQAVQTASAHLPAPAAVGR;S(0.458)S(0.542)PQLDPLRKS(0.955)PT(0.045)MEQAVQTASAHLPAPAAVGR;S(0.477)S(0.523)PQLDPLRKS(0.851)PT(0.144)MEQAVQT(0.004)AS(0.001)AHLPAPAAVGR;S(0.469)S(0.531)PQLDPLRKS(0.841)PT(0.152)MEQAVQT(0.007)ASAHLPAPAAVGR;S(0.47)S(0.53)PQLDPLRKS(0.894)PT(0.106)MEQAVQTASAHLPAPAAVGR 169.22 4.5007999999999996e-14 3413350000.0 730611.0 911410.0 954888.0 1031415.0 968871.0 1276180.0 1298790.0 1113830.0 1684940.0 1350490.0 True False 726677.4715545129 941745.7308910212 1089327.9303647152 1161992.0332466373 1092250.9789016692 1187960.6804045865 1235962.5658403847 1196949.6505141386 1269709.114039263 1264300.571987342 0.5747663867716641 0.7448748752922733 0.8616051866941822 0.9190789429289848 0.8639171753159696 0.9396188744399936 0.9775860212556788 0.9467287107468952 1.0042778925927554 1.0 20.26990805670464 5.315714200576683 0.5999556448661785 0.9689390381770211 7.60693726008876e-20 0.9433080559328426 0.030194734339805993 1.449217685220946 0.23912225074977206 0.014004460679007893 1.1296302485848913 206877.94835203214 -5.315714200576683 -0.9689390381770211 SS(ph)PRPTAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPRPTAEK 9 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.11)S(0.89)PRPTAEK;S(0.499)S(0.5)PRPT(0.001)AEK 66.267 0.038889 1062070000.0 1779370.0 1644390.0 1454020.0 1382100.0 1418130.0 1829530.0 1882740.0 1733280.0 2562300.0 1958190.0 True False 1769790.0696265912 1699122.5270952526 1658733.3774315983 1557073.7182900957 1598720.4495849512 1703058.8973503772 1791664.6734347537 1862626.1550175038 1930855.4980609424 1833216.6377091978 0.9654014878667777 0.926853101888978 0.9048212542432327 0.8493670012922354 0.8720848462202072 0.9290003496141804 0.9773338494645304 1.0160425760400345 1.0532609503663215 1.0 20.805945853664 2.1006406198812924 1.9862547883954584 1.0254772109333425 0.9021055915383545 0.7349967029855081 0.03161676817732149 0.18052839195632392 1.3743172039858957 0.018662323413336013 0.010626929861386334 126.07838000431022 -2.1006406198812924 -0.12337161939498809 SS(ph)PSARPPDVPGQQPQAAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPSARPPDVPGQQPQAAK 19 1 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 S(0.005)S(0.995)PSARPPDVPGQQPQAAK;S(0.14)S(0.86)PSARPPDVPGQQPQAAK;S(0.021)S(0.979)PSARPPDVPGQQPQAAK;S(0.188)S(0.812)PSARPPDVPGQQPQAAK 294.4 7.407799999999996e-50 6684800000.0 2742450.0 2300680.0 2207310.0 1809690.0 1943940.0 2786530.0 2618500.0 2585240.0 2972720.0 2591360.0 True False 2727684.9539148384 2377256.7430095705 2518080.06171754 2038796.5684483058 2191489.2363649136 2593903.7398860594 2491833.151358604 2778163.736382726 2240132.9884071792 2425977.186225084 1.1243654595776407 0.9799171882191833 1.0379652685999787 0.8404022016467325 0.903342887479893 1.0692201701707986 1.0271461601153777 1.1451730676435825 0.9233940867733031 1.0 21.21013455281034 2.710945140108351 24.787458690629883 1.0499140254184591 0.9731257446920347 0.07428616882178551 0.08835894028903661 1322.27524394086 1186863.5502610449 0.029278200374436358 0.02761012866534768 513.9787219110881 -2.710945140108351 -0.07678828072642441 SS(ph)PSHTISRPIPMPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSHTISRPIPMPIR 16 1 Q9Y4J8;Q9Y4J8-2;Q9Y4J8-15;Q9Y4J8-14;Q9Y4J8-13;Q9Y4J8-6;Q9Y4J8-10;Q9Y4J8-11;M0QZ28 Q9Y4J8 DTNA Dystrobrevin alpha 1 S(0.14)S(0.84)PS(0.017)HT(0.003)IS(0.001)RPIPMPIR 54.74 0.08517999999999999 504750000.0 154690.0 139370.0 123390.0 120820.0 106810.0 166260.0 141550.0 117540.0 204300.0 139040.0 True False 153857.16622767475 144008.84619905576 140762.2394748938 136115.79961204625 120411.62038753057 154766.83753394216 134702.68572648865 126311.43165602641 153953.002479745 130166.34816186708 1.1820041692830408 1.1063446753532256 1.0814026932663912 1.0457065250288868 0.9250595264283967 1.1889926983392312 1.0348503098433741 0.9703846918940453 1.18274042910306 1.0 16.989996991948285 4.570662335340868 1.4523221148308658 1.0449062515309442 1.2092551762964583 0.20648456803767157 0.07892040357601511 1.293745339801986 3.1857962784858755 0.02117261770927623 0.2815647255670798 37210.228363105896 -4.570662335340868 0.1643489247655141 SS(ph)PSIICMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPSIICMPK 10 0 Q9NZN8;Q9NZN8-5;F8VP97;F8VV52;F8VUB4;Q9NZN8-4;F8VX63;F8VVY1;F8VQD8;A0A087X050 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 1 S(0.094)S(0.906)PS(0.001)IICMPK;S(0.08)S(0.92)PSIICMPK 146.9 2.9204e-05 686480000.0 970640.0 826690.0 756910.0 677060.0 681050.0 930760.0 932810.0 885970.0 1099440.0 839790.0 True False 965414.182088241 854205.8769053422 863476.3488203412 762775.7265794738 767777.680600391 866418.7519733675 887686.4166197517 952085.5802645023 828497.7437412178 786193.8832196087 1.2279594164923953 1.08650791507969 1.0982994999709825 0.9702132551016128 0.9765754949099833 1.1020420922447567 1.1290935169636687 1.2110060897008466 1.0538084325311297 1.0 19.584525613722775 2.485231038353489 24.008439512332686 1.1253076256888213 1.065615251988497 0.0 0.08547672544094577 590.2710985558699 1747468.084439099 0.02996485037344028 0.026170513411999097 305.6546719216674 -2.485231038353489 -0.05969237370032432 SS(ph)PSPQKR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSPSPQKR 8 1 O14617-5;O14617-2;O14617;A0A2R8Y611;O14617-3;O14617-4 O14617-5 AP3D1 AP-3 complex subunit delta-1 1 S(0.158)S(0.842)PSPQKR;S(0.094)S(0.906)PSPQKR;S(0.069)S(0.931)PSPQKR;S(0.261)S(0.736)PS(0.003)PQKR;S(0.182)S(0.818)PSPQKR 131.44 0.00061557 1094500000.0 709741.0 641177.0 606406.0 517631.0 610082.0 473893.0 639635.0 694807.0 1037700.0 681320.0 True False 705919.8333156377 662518.1888453194 691782.6938245595 583163.0315260978 687772.3264606819 441133.8923341308 608693.4114070125 746657.0264984574 781972.7394676036 637837.5742926019 1.1067391790120593 1.038694199820526 1.0845750104825445 0.9142814017704409 1.0782875675260437 0.6916085067948111 0.9543078613424242 1.1706068387810837 1.2259747167370247 1.0 19.282829562069157 -0.9664590625834675 5.392995535425123 0.999999928816762 1.0266847617267496 0.0034914632459766004 0.14252934606157616 1.2609283674109724e-07 2.4173424450107475e-08 0.14342244850194444 0.033804905135058703 0.1080291446390827 0.9664590625834675 0.026684832909987577 SS(ph)PTQETQAPFIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPTQETQAPFIAK 14 0 O15231-5 O15231-5 ZNF185 Zinc finger protein 185 1 S(0.213)S(0.787)PTQETQAPFIAK 180.27 1.8579e-06 88643000.0 229010.0 204370.0 184080.0 171390.0 188300.0 227360.0 222240.0 211480.0 269140.0 208940.0 True False 227777.03560540298 211172.3319057261 209996.86394795726 193087.95642698728 212278.88885845896 211643.13834787143 211489.402160755 227261.71147368097 202814.05329123125 195605.2703174662 1.1644728960304709 1.0795840600971265 1.0735746721299155 0.9871306438400492 1.0852411518050182 1.0819909811447097 1.081205029994892 1.1618383855651566 1.0368537256796058 1.0 17.577585716702618 2.5041680267473305 2.749776350479658 1.091178867749752 1.0731895264618678 0.0 0.05679976230248523 1.5992070316979903 24.375687245671593 0.021316632504857682 0.01849300727441537 319.2772886858287 -2.5041680267473305 -0.01798934128788421 SS(ph)PVCSTAPVETEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPVCSTAPVETEPK 15 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 S(0.159)S(0.841)PVCSTAPVETEPK 256.52 1.8463e-16 0.0 162470.0 131950.0 122440.0 114290.0 116470.0 153140.0 146250.0 150920.0 179010.0 154970.0 True False 161595.279572114 136341.87598454056 139678.48773244186 128759.10228158216 131301.76412822487 142553.79225278427 139175.32877074514 162182.4167562317 134895.38411110692 145079.681923508 1.1138381159211095 0.9397723663085064 0.9627708434464732 0.8875060971630009 0.9050320650513459 0.9825896387610259 0.9593026874991641 1.1178851139316734 0.9298020392836905 1.0 17.14648596185874 1.9147120176938695 24.999988472531083 1.0313944065156433 0.9588094157749764 0.08212041945576631 0.07193116674889356 141.76707754057037 41552.79436638656 0.029249251882103772 0.018877064606527834 82.16975984828416 -1.9147120176938695 -0.07258499074066693 SS(ph)PVEFECINEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPVEFECINEK 12 0 O75131;H0YB26 O75131 CPNE3 Copine-3 1 S(0.035)S(0.965)PVEFECINEK;S(0.161)S(0.839)PVEFECINEK 201.48 1.5505e-07 267580000.0 778210.0 714870.0 692210.0 556070.0 558930.0 1131910.0 795400.0 827650.0 1313880.0 947550.0 True False 774020.203827259 738664.0158019587 789667.1512028222 626468.4049848588 630106.4224623401 1053663.725929536 756923.4632769279 889413.445721542 990091.8790900017 887076.5477616317 0.8725517609279055 0.8326947856595199 0.8901905401460523 0.7062168496795821 0.7103179810719755 1.187793464485399 0.8532786321393343 1.0026343814023795 1.1161290213210004 1.0 19.75869907762281 2.752363087290784 24.99385214727227 1.0147783629647813 0.8036121076279038 0.5708466239370494 0.09896372519175636 635.6500876050753 1151049.8871652419 0.03047864993303023 0.03218248740917601 565.4094818620088 -2.752363087290784 -0.2111662553368775 SS(ph)PVESLKK ddPTM_BT-474_Trastuzumab_2h_R1 6 SSPVESLKK 9 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 S(0.1)S(0.9)PVESLKK;S(0.077)S(0.923)PVESLKK;S(0.038)S(0.962)PVESLKK;S(0.011)S(0.989)PVESLKK;S(0.078)S(0.922)PVESLKK;S(0.084)S(0.916)PVESLKK 184.44 2.6951e-05 14251150000.0 19525730.0 15253180.0 13698010.0 12457610.0 12195390.0 18848730.0 19944920.0 18304180.0 28812500.0 18564140.0 True False 19420605.63919253 15760872.875557993 15626570.742762674 14034742.14869248 13748400.628760297 17545761.660237856 18980108.022606593 19670130.858342733 21712045.44271975 17379360.69164013 1.117452246015832 0.9068729946516003 0.8991453149527767 0.8075522683319134 0.7910763159069246 1.0095746311702805 1.0921062264238786 1.1318098063183943 1.2493005829129111 1.0 24.050871677090875 2.368512032501033 2.872446787470849 1.1319619256251234 0.8988296084866233 0.4964971199092926 0.10070579197854007 0.21077160275667656 3.5320071547184617 0.03952548981953405 0.031515156901085056 233.62108280466006 -2.368512032501033 -0.23313231713850013 SS(ph)PVGGGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 S(0.369)S(0.631)PVGGGPR 72.848 0.047823 80137000.0 197320.0 231370.0 213820.0 225500.0 221980.0 212520.0 226600.0 208110.0 261850.0 250070.0 True False 196257.65104431278 239071.01058388123 243923.99744324334 254048.27687896395 250247.8372214592 197828.9926182692 215638.49230393747 223640.22496116726 197320.57611023574 234110.31850430198 0.8383126907783279 1.0211895490607694 1.0419190362972448 1.0851647996638627 1.0689312577944345 0.8450246613740519 0.9210977699813557 0.9552770949609284 0.8428529650930777 1.0 17.836828997639056 2.7447496636792605 24.977206655054456 0.9145887146477891 1.017490298263874 0.28870941961306484 0.07675887937599582 637.026742643062 2570857.720385876 0.02390091553863536 0.024782103962365982 555.5839148950621 -2.7447496636792605 0.10290158361608492 SS(ph)PVKVGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPVKVGEK 9 1 P49916-3;P49916;P49916-4;P49916-2 P49916-3 LIG3 DNA ligase 3 1 S(0.115)S(0.885)PVKVGEK 143.42 6.175600000000001e-05 764240000.0 1513100.0 1183100.0 956050.0 948680.0 985620.0 1697900.0 1883400.0 1504500.0 3036000.0 1671600.0 True False 1504953.6377212123 1222478.7683009475 1090653.5298644295 1068782.7907296477 1111132.8647725666 1580528.169426684 1792292.7467133102 1616773.4296962023 2287818.480315736 1564917.056871238 0.9616826854262095 0.7811779946632236 0.6969401509655658 0.6829644970874567 0.7100266815380434 1.0099756804917557 1.1452956812271367 1.0331368187197356 1.4619423248474304 1.0 20.577654763343656 2.5459765615847387 3.056264023980945 1.1471658293687708 0.7590904291085234 0.6460762211321005 0.13757561082002173 0.16607367231358325 3.0506272775772594 0.04863392159787317 0.04364509445907643 351.5414676939903 -2.5459765615847387 -0.38807540026024734 SS(ph)PVPPVPER ddPTM_BT-474_Trastuzumab_2h_R1 5 SSPVPPVPER 10 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 S(0.147)S(0.853)PVPPVPER;S(0.142)S(0.858)PVPPVPER;S(0.006)S(0.994)PVPPVPER;S(0.145)S(0.855)PVPPVPER;S(0.091)S(0.909)PVPPVPER 168.05 5.3035e-06 7099020000.0 2284380.0 2348630.0 2106230.0 2073910.0 2115970.0 2327890.0 2439450.0 2188990.0 2822710.0 2357430.0 True False 2272081.1518984768 2426802.7297731857 2402768.8763206517 2336466.793357216 2385426.237163217 2166968.4435636285 2321444.4838960296 2352343.5492659933 2127090.9428761653 2206976.7991026337 1.0294993372029624 1.099605002988674 1.0887150591241503 1.058673020172769 1.0808569614928174 0.9818718730730324 1.051866283705356 1.065866913608909 0.9638030375947085 1.0 21.073640032654655 2.769402578753761 24.56048471656406 1.024038382006856 1.0732800758266712 0.4069648223107094 0.03409830481138445 650.7802308662574 518236.5851259614 0.010531066708173635 0.01116835926779782 588.034191100198 -2.769402578753761 0.049241693819815247 SS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPVTK 6 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 S(0.188)S(0.812)PVTK 70.919 0.093987 315490000.0 647880.0 539440.0 456230.0 521150.0 551860.0 908380.0 656940.0 613580.0 871890.0 650220.0 True False 644391.886066235 557394.934301634 520463.2183777508 587127.5365652869 622136.0998695121 845585.8286965145 625161.3024454935 659368.4552961078 657024.3922274335 608722.4029186509 1.0585972899577198 0.915680007223463 0.8550091402620925 0.96452427863699 1.0220358194253183 1.3891156702006873 1.0270055766766966 1.0832005724360128 1.0793497809135795 1.0 19.215424936991297 2.99504007182369 22.175789236788937 1.1197837583142831 0.9461673710553166 0.3408922236197526 0.1098570069078146 55.20959764358255 246850.1493158204 0.03237209455429405 0.03757724584797514 988.6443114569483 -2.99504007182369 -0.17361638725896655 SS(ph)RS(ph)S(ph)PELTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.209)S(0.792)RS(0.999)S(1)PELTR 72.88 0.038044 151500000.0 155000.0 177720.0 109910.0 168130.0 169390.0 210560.0 162360.0 160580.0 208200.0 158710.0 True False 154165.49722211884 183635.30276599142 125384.37264515416 189415.24076124275 190960.8124468105 196004.48280492527 154506.02652456882 172563.29500871807 156891.89973706726 148580.99192153284 1.0375855971101284 1.2359272905040983 0.8438789580256063 1.274828215316229 1.2852304320841987 1.3191760283067517 1.0398774737361092 1.1614089580169886 1.0559352021281665 1.0 17.18089003705235 1.0844896754338855 1.5157415098204055 0.9989023255453288 1.1567334051564147 0.11428591741238381 0.13759948902892172 0.859713511187025 3.947974688061731 0.12932548112388179 0.03845874137670768 12.147577414588971 -1.0844896754338855 0.1578310796110859 SS(ph)RSS(ph)PELTR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.424)S(0.56)RS(0.073)S(0.943)PELTR;S(0.404)S(0.595)RS(0.021)S(0.98)PELTR;S(0.443)S(0.557)RS(0.111)S(0.89)PELTR 104.86 0.0014944 2519140000.0 1130500.0 1267120.0 1060170.0 1188770.0 1218210.0 1107480.0 1134500.0 1112680.0 1417850.0 1232950.0 True False 1124413.513610357 1309295.3232097847 1209432.720837168 1339268.1601126648 1373341.8226036285 1030922.5143275022 1079619.9007891302 1195713.8316745567 1068439.8657166248 1154262.0754183985 0.974140567862613 1.134313732637529 1.047797330081014 1.1602808310471477 1.189800697649897 0.8931442315245539 0.9353334253815696 1.0359119104221914 0.9256475530735385 1.0 20.13853939467668 2.7348092808852855 24.999959471059768 0.9646050715798342 1.1034106315250845 0.5300629779516064 0.06728647830737594 276.36445543789273 1841763.3972928666 0.021690945943740023 0.02116494247019775 543.0118171195429 -2.7348092808852855 0.13880555994525023 SS(ph)SDALSASFNGEMLGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSDALSASFNGEMLGNR 18 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.023)S(0.889)S(0.088)DALSASFNGEMLGNR 236.27 8.5422e-24 260890000.0 137100.0 149990.0 140200.0 145750.0 163570.0 149240.0 165980.0 137930.0 168250.0 153220.0 True False 136361.86883324207 154982.32647913022 159938.94135975448 164201.93505591567 184399.66994465303 138923.39007317196 157950.91329482594 148223.03699434822 126787.04193449371 143441.36842175826 0.9506453426482906 1.0804576684143048 1.1150126572237422 1.1447320731988242 1.2855403707699284 0.9685029611868861 1.101153140357707 1.0333353524523727 0.88389453704669 1.0 17.1301016310426 1.4822622344590166 3.6126103309817403 0.9426100558279958 1.0967903639265664 0.2951046454930567 0.09147416220391148 0.25573495547478686 6.714677589540711 0.06441757502602656 0.024000014969832013 30.357236529236868 -1.4822622344590166 0.15418030809857053 SS(ph)SDPPAVHPPLPPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 1 S(0.161)S(0.419)S(0.419)DPPAVHPPLPPLR 81.656 0.0078402 74940000.0 166690.0 165400.0 146570.0 170240.0 169040.0 181660.0 188140.0 166750.0 200640.0 204930.0 True False 165792.55956100015 170905.23901358855 167205.78199072176 191792.36654489962 190566.242021423 169102.27178164312 179038.949435405 179193.73173934323 151194.9604382575 191851.19195060016 0.8641726844401891 0.8908218774976129 0.8715389270751868 0.9996933800353157 0.9933023615015746 0.8814241395236436 0.9332178112372937 0.9340245943610499 0.7880845508491224 1.0 17.54962820271282 3.867335279417752 19.42144292915712 0.9310845812689686 0.877019575061575 0.15784001963569227 0.06053353472408156 6.170171428073352 919.185169953256 0.015439544456753378 0.027834299183371637 7367.756757321032 -3.867335279417752 -0.05406500620739363 SS(ph)SEDAESLAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 S(0.075)S(0.462)S(0.462)EDAESLAPR 233.0 5.7657e-16 1843400000.0 668560.0 724880.0 651270.0 695560.0 669640.0 761170.0 746160.0 696710.0 851890.0 711150.0 True False 664960.5472439991 749007.1926007865 742963.1550596809 783617.8246826257 754914.6847327588 708552.1095014483 710065.3901919948 748702.0380216949 641953.1242411644 665763.7981538537 0.9987934896549165 1.1250344261399683 1.1159560749922106 1.1770207795250782 1.1339076814121138 1.064269507393231 1.0665425067583854 1.1245760735231125 0.9642355532416816 1.0 19.3446508984688 1.2377302338712408 24.99996699942862 0.9821177271931065 1.1037865037877224 0.5060325684356677 0.046812522599616095 17.269981497917986 519787.4205038092 0.037298724899846085 0.011413857757776438 17.287422010542574 -1.2377302338712408 0.12166877659461584 SS(ph)SKESLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSKESLVR 9 1 Q13439-5;Q13439-3;Q13439-4;Q13439;E7EVX2;Q86W71 Q13439-5 GOLGA4 Golgin subfamily A member 4 1 S(0.047)S(0.476)S(0.476)KES(0.001)LVR;S(0.045)S(0.461)S(0.461)KES(0.033)LVR 117.98 0.00064461 2293720000.0 1631530.0 1259290.0 1083500.0 1039250.0 1093570.0 1551350.0 1504700.0 1410760.0 2319030.0 1420280.0 True False 1622746.0237600252 1301204.7063931194 1236047.3820491703 1170818.9434432965 1232829.6574027874 1444108.8259850927 1431911.912487798 1516038.0748941263 1747536.1299099505 1329636.5144371174 1.2204433363105942 0.9786168567610117 0.9296129947006105 0.8805556486533058 0.9271929914805989 1.0860929361558904 1.0769198175141703 1.1401898627429914 1.3142961335186745 1.0 20.34260047633599 2.236833045531967 1.73056584214925 1.159792499767127 0.9809059100105931 0.2655445443663148 0.11325938051732717 0.44897780374971885 2.6801525136182036 0.059919506256379575 0.03732405578564829 172.51745610417527 -2.236833045531967 -0.17888658975653382 SS(ph)SPATEQSWMENDFDELREEGFRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.14)S(0.757)S(0.104)PATEQSWMENDFDELREEGFRR 304.42 8.017e-64 518090000.0 32433.0 40278.0 39980.0 46208.0 43222.0 43094.0 50558.0 38681.0 48027.0 48285.0 True False 32258.38433164504 41618.62888143483 45608.836487610395 52057.928062187 48726.065503134996 40115.01321236442 48112.31638968435 41567.57263813811 36191.389378828724 45203.40996113169 0.7136272320911746 0.9206966668492654 1.008968936786568 1.1516371907993044 1.0779289780357781 0.8874333429017291 1.0643514821349516 0.9195671891540954 0.8006340541553837 1.0 15.464143987332719 4.694905809393038 2.7701731783172985 0.9908633277526857 0.6761726951030146 0.42752136160001275 0.0956335689143913 0.3783752066315858 4.220393292528097 0.02470216243426222 0.2576630386494267 49534.27482838406 -4.694905809393038 -0.3146906326496711 SS(ph)SPPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPPPR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.031)S(0.814)S(0.156)PPPR 84.227 0.022762 276240000.0 210790.0 207450.0 207830.0 194470.0 204650.0 138710.0 223970.0 207080.0 225290.0 217430.0 True False 209655.13006097064 214354.84784382698 237090.65750925668 219089.88206054168 230710.9644444168 129121.30418821807 213135.7154515129 222533.36113093328 169770.29823133472 203553.43124881177 1.0299759074299293 1.0530642815930338 1.1647588353322866 1.0763261553313688 1.1334172213604656 0.6343361710782844 1.0470750315723654 1.093242986697294 0.8340330948477969 1.0 17.635048015265863 SS(ph)SPVTELASRS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.37)S(0.542)S(0.088)PVTELAS(0.017)RS(0.983)PIR;S(0.263)S(0.647)S(0.09)PVTELAS(0.012)RS(0.988)PIR;S(0.086)S(0.457)S(0.457)PVTELAS(0.002)RS(0.998)PIR;S(0.128)S(0.744)S(0.128)PVTELAS(0.141)RS(0.859)PIR 200.89 3.8058e-09 2734700000.0 1871670.0 2216290.0 2062720.0 2487430.0 2344720.0 2280560.0 2455690.0 2239190.0 2439940.0 2426640.0 True False 1861593.136682084 2290057.8728744024 2353133.0465163505 2802338.382958058 2643306.1937557408 2122910.2550607906 2336898.8930532024 2406289.7281764317 1838649.4805209439 2271769.7576489714 0.8194462182684505 1.0080501622859692 1.0358149361718685 1.2335485907067298 1.1635449344528945 0.934474212412162 1.028668897974781 1.0592137341711396 0.8093467545864953 1.0 21.115385195394744 -0.7215985521550713 7.5071390093639545 1.0000067189438764 1.0234109955975212 0.0 0.12681857331834587 0.0 0.0 0.12314660827094291 0.029025933929502378 0.18984599857105605 0.7215985521550713 0.023404276653644862 SS(ph)SPVTELASRS(ph)PIRQDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.268)S(0.366)S(0.366)PVTELAS(0.293)RS(0.707)PIRQDR;S(0.27)S(0.365)S(0.365)PVTELAS(0.252)RS(0.748)PIRQDR 217.11 4.611900000000001e-19 1410420000.0 417010.0 540450.0 475300.0 633440.0 549030.0 551910.0 652800.0 465890.0 807230.0 621610.0 True False 414764.86449416657 558438.5515410764 542218.1086183402 713633.4390519328 618945.7161442365 513757.76075639453 621221.5700618288 500657.07754148485 608298.9828278234 581938.3176129039 0.7127299439492513 0.9596181152527936 0.9317449843181062 1.2263042619005378 1.063593335257826 0.8828388597331341 1.0675041516600312 0.8603267088429017 1.0452980400449488 1.0 19.150506717621948 4.84483105687767 2.000253739035835 1.0050796055381621 0.5693956935058733 0.4437153397004402 0.09941395697048183 1.0544264531024927 3.5895325102311415 0.026184395674783617 0.9223965253772426 69956.98062713744 -4.84483105687767 -0.43568391203228884 SS(ph)TDSLPGPISR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSTDSLPGPISR 12 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 S(0.062)S(0.932)T(0.006)DSLPGPISR;S(0.077)S(0.908)T(0.015)DSLPGPISR;S(0.002)S(0.832)T(0.165)DSLPGPISR 228.76 1.0282e-11 1342150000.0 1313770.0 1603820.0 1452310.0 1488650.0 1381380.0 1707730.0 1665110.0 1366890.0 1890930.0 1479350.0 True False 1306696.8082935677 1657202.1791703356 1656782.6242951832 1677112.937365277 1557290.5549192675 1589678.6446640177 1584562.2679620904 1468894.27272678 1424935.6386638477 1384936.6164647448 0.9435065783942548 1.1965906305521685 1.1962876889805727 1.210967287186294 1.1244489721807498 1.1478349447658531 1.1441406408958408 1.0606220207220383 1.0288814821729577 1.0 20.40138852018025 1.5450519265974103 1.9231313915557051 1.0089050173311198 1.146266893432334 0.3310984420286819 0.07156376528599928 0.3457994114683393 2.5939538432244764 0.057584503704998985 0.019722599178912493 35.07938142511337 -1.5450519265974103 0.1373618761012141 SS(ph)TPGLK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSTPGLK 7 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 S(0.096)S(0.452)T(0.452)PGLK;S(0.083)S(0.458)T(0.458)PGLK;S(0.026)S(0.487)T(0.487)PGLK 98.582 0.011703 4952390000.0 16604700.0 13872700.0 12554200.0 11531600.0 11195800.0 13762800.0 16638800.0 15696500.0 20679900.0 15497800.0 True False 16515302.140155584 14334444.433275752 14321722.236937428 12991499.377638409 12621518.76729441 12811410.03014641 15833917.67761144 16867852.535211988 15583615.741462942 14508717.135665879 1.1383020280653926 0.9879884140850935 0.9871115483898454 0.8954271598349803 0.8699265861533487 0.8830146669999456 1.0913382299450793 1.1626012401707655 1.0740863989383809 1.0 23.790416625805452 2.1609732336600582 8.03038807875699 1.1037052334158886 0.9558845918239308 0.3346827179025197 0.08174715956226167 0.2575993000252137 23.3756878009295 0.03235868885452904 0.023896797450412635 144.8682565914865 -2.1609732336600582 -0.14782064159195774 SS(ph)TPLPTISSSAENTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPLPTISSSAENTR 16 0 P42166;P42167;G5E972;H0YJH7;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 1 S(0.003)S(0.498)T(0.498)PLPTISSSAENTR 202.01 3.3006e-11 251220000.0 155790.0 169220.0 172930.0 142580.0 189070.0 215190.0 166880.0 169550.0 235370.0 172420.0 True False 154951.24394989604 174852.38540434974 197277.04086549467 160630.6133809433 213146.94379431132 200314.42180277294 158807.37685649216 182202.68195745512 177366.21729641478 161416.00798381114 0.9599496721876342 1.083240674753189 1.2221652816818522 0.9951343450214268 1.3204820665351136 1.2409823802783118 0.9838390803991348 1.128777029201024 1.0988142967468464 1.0 17.300424135417114 0.6048390168141939 0.8588968080500098 1.0006438050780302 1.1256343236470243 0.08607070193808897 0.11251389626521656 3.3147348474714144 4.105926967043467 0.11043102093135605 0.03683661348335188 4.025677838520718 -0.6048390168141939 0.12499051856899412 SS(ph)TPPRQS(ph)PSRS(ph)S(ph)SPQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 S(0.309)S(0.351)T(0.351)PPRQS(0.976)PS(0.033)RS(0.675)S(0.674)S(0.63)PQPK 68.55199999999999 0.014325 100970000.0 115510.0 71219.0 51151.0 60951.0 64390.0 91047.0 87714.0 91394.0 148370.0 92703.0 True False 114888.10699436744 73589.48136220539 58352.6161875378 68667.39035055325 72589.6848305692 84753.13519158462 83470.93871998039 98214.28436932836 111806.20155614168 86786.61517296874 1.3237998367074397 0.8479358391330161 0.6723688447952373 0.7912209758808632 0.8364156694657976 0.9765691981726522 0.961795071205622 1.1316754798373445 1.2882885377348572 1.0 16.405184937051207 1.9130571380766728 1.8558705022908515 1.1626116078952295 0.8823244925323821 0.2574701626111252 0.17346340606943447 0.4297773486575991 2.7536573830446565 0.11237551865207496 0.052950809053147 81.85724767706361 -1.9130571380766728 -0.28028711536284745 SS(ph)VDLEESSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVDLEESSTK 11 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 S(0.011)S(0.989)VDLEESSTK 260.77 1.2292e-20 480360000.0 512490.0 421680.0 386920.0 381330.0 404490.0 526100.0 502630.0 417380.0 621290.0 483750.0 True False 509730.810782992 435715.3638890573 441394.9728310707 429606.33890135447 455999.4038999372 489731.9453061891 478315.866666938 448527.01501269604 468181.4043594753 452876.6608407881 1.1255400307815628 0.9621060248062464 0.9746472075014838 0.9486166456530767 1.0068953499466093 1.0813804014474435 1.0561724814410192 0.9903955177994451 1.0337945070745602 1.0 18.78875866594038 2.986689597959671 24.827899218549582 1.031687600177349 0.9953121851554667 0.06581453940504922 0.05143142872785126 1429.8547186694648 2667116.033193556 0.015499000500832888 0.017130225714754935 969.8165652866109 -2.986689597959671 -0.03637541502188224 SS(ph)VEKENQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSVEKENQK 9 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 S(0.077)S(0.923)VEKENQK;S(0.126)S(0.874)VEKENQK;S(0.161)S(0.839)VEKENQK 174.23 6.539600000000001e-05 1394020000.0 1481390.0 958380.0 787240.0 738810.0 751240.0 800310.0 1123370.0 1222030.0 1894100.0 1202160.0 True False 1473414.3608379026 990279.0989470563 898076.5491872539 832343.2702481047 846905.961051667 744986.4534270985 1069028.3014098587 1313224.0839426059 1427324.4346396716 1125437.119579042 1.3091929661863453 0.8799061997505998 0.7979802101455211 0.739573322905356 0.7525129092671505 0.6619529785064783 0.9498783031163194 1.166856913724157 1.2682400551827784 1.0 20.10205402211294 1.853881578644335 3.75640511838457 1.1612483606926223 0.8429977832784766 0.3416858357254138 0.17665237869571504 0.24971793101031614 5.774263594497098 0.09079508329191015 0.049404011124324465 71.43015271720562 -1.853881578644335 -0.31825057741414564 SS(ph)VKTPEPVVPTAPEPHPTTSTDQPVTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVKTPEPVVPTAPEPHPTTSTDQPVTPK 29 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.088)S(0.632)VKT(0.28)PEPVVPTAPEPHPTTSTDQPVTPK 212.08 3.1570999999999986e-26 1449700000.0 571560.0 443640.0 541810.0 514070.0 366840.0 637020.0 691470.0 683120.0 1003400.0 658540.0 True False 568482.7844662864 458406.28921395674 618092.1385030567 579151.2092912158 413554.89956897014 592984.306783784 658020.9544280835 734097.8832130738 756125.5148711504 616511.4133955404 0.9220961236309831 0.743548747442009 1.002563983525966 0.9394006286135773 0.670798448468694 0.9618383275628638 1.067329720311133 1.1907287801371043 1.2264582592342643 1.0 19.23376807773764 2.242999706577393 2.7020145603095593 1.1527247409996981 0.8599898893638569 0.5760336642710648 0.10698387778833028 0.17973588371072546 2.6972857285120915 0.04414851783736702 0.03173527053013539 174.9845506375226 -2.242999706577393 -0.29273485163584123 SS(ph)VQVRPESGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVQVRPESGR 11 1 H0YJ83;Q8TB24-4 H0YJ83 RIN3 1 S(0.154)S(0.827)VQVRPES(0.018)GR 64.82 0.040658 335350000.0 150640.0 127990.0 143670.0 164910.0 146460.0 145240.0 151890.0 133790.0 125060.0 122590.0 True False 149828.97097767738 132250.06977841133 163897.4871979737 185787.58909139672 165110.81286356814 135199.90065818475 144542.50042385276 143774.08917185426 94240.63871814434 114766.2012454206 1.3055147713504707 1.1523433584388014 1.428098912566504 1.618835398185753 1.4386710640573406 1.1780463166944763 1.2594518146920046 1.252756365651609 0.8211532462995479 1.0 16.808338303950073 1.3730191239602423 3.515268222482606 0.9119529591424971 1.3403749226712967 0.6028452682997565 0.13625407370477047 0.17084977494615625 3.437429844617813 0.11678272453953786 0.03835796081438472 23.605821780559477 -1.3730191239602423 0.4284219635287996 SSAIPDFRDPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSAIPDFRDPQK 12 1 B8ZZY2;P52594-2;P52594-3;P52594;P52594-4;C9J2I0 B8ZZY2 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 0 ; 117.95 0.00061876 1026970000.0 1604360.0 1589020.0 1501650.0 1494560.0 1507280.0 1862440.0 1817110.0 1701460.0 2366400.0 1828800.0 False True 1595722.3040211545 1641909.5701171267 1713069.2674242165 1683771.1427593108 1699223.1736515048 1733693.9065121815 1729209.4472657 1828431.5850388173 1783232.4281354304 1712084.4182855478 0.9320348266583045 0.959012039699133 1.0005752339827114 0.9834626872227542 0.9924879611678716 1.0126217422434538 1.010002444270418 1.0679564427493462 1.0415563678344373 1.0 20.707322408235726 4.2406914797598905 0.44521958530778905 1.039890888066045 0.8949151639349807 0.677159296455031 0.020669870052935635 1.9019515868723051 0.4076089565099532 0.016812040777323112 0.1399500697013922 17405.69943461264 -4.2406914797598905 -0.1449757241310642 SSAQLLEDWGMEDIDHVFSEEDYR ddPTM_BT-474_Trastuzumab_2h_R1 8 SSAQLLEDWGMEDIDHVFSEEDYR 24 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;;;;;;; 268.97 7.0198e-45 852195000.0 320766.0 389275.0 372821.0 362539.0 370709.0 407219.0 379856.0 348544.0 420059.0 410473.0 False True 319039.0314964533 402231.7830532932 425310.9561817758 408436.4002280393 417916.59378561075 379068.90902041626 361480.9140891635 374554.1231505698 316541.08795222297 384276.2617163848 0.8302335150015593 1.0467255543100928 1.1067843594660465 1.0628717954206754 1.0875420509166247 0.9864489347514996 0.9406797923832062 0.9747001323412727 0.8237331302703423 1.0 18.551784332539793 2.42567903652859 3.656610769059022 0.9376780825438021 1.034828921737695 0.2092565782610395 0.08316536952756953 0.354704745474164 9.8625968753986 0.03020969151567368 0.02532890102015565 266.48884622049735 -2.42567903652859 0.09715083919389278 SSATS(ph)GDIWPGLSAYDNS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSATSGDIWPGLSAYDNSPR 20 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 SSAT(0.025)S(0.974)GDIWPGLSAYDNS(1)PR 278.98 1.7684999999999996e-44 89052000.0 71347.0 78654.0 71702.0 72009.0 60278.0 77725.0 75264.0 77046.0 78756.0 83687.0 True False 70962.87567939688 81271.95084265302 81797.01835504363 81125.33201675082 67954.04600430271 72352.0536949698 71623.19278359912 82795.56375166077 59347.639076332736 78346.02401195474 0.9057623098852946 1.0373462070040953 1.044048110757507 1.0354747804990332 0.8673579401289551 0.923493624691531 0.9141905244951577 1.0567934339466554 0.7575067123671386 1.0 16.25757244066996 3.2575765475871803 24.99067499167318 0.9315813356721268 1.0106634770947853 0.19610215166878064 0.08282513361929773 432.843071234391 568837.4492731111 0.022695029669977024 0.030679417968914883 1809.5748329809499 -3.2575765475871803 0.07908214142265857 SSATSGDIWPGLSAYDNS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 15 SSATSGDIWPGLSAYDNSPR 20 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLS(0.017)AY(0.015)DNS(0.968)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLS(0.022)AY(0.001)DNS(0.978)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR 447.74 5.715199999999997e-155 46876990000.0 2870068.0 3214053.5 2793797.5999999996 2793923.6 2943179.6 2927503.8 2832881.8 2897432.9 3152543.7 2892356.6 True False 2854615.872782535 3321031.3278111317 3187140.0179559365 3147634.0412925626 3317976.0764677813 2725132.3529086886 2695844.4846746023 3113654.0558641464 2375641.54705631 2707763.9255169323 1.0542336596930502 1.2264848115136633 1.1770376242631595 1.162447734690038 1.2253564814866034 1.0064143063684698 0.9955980502103579 1.149898640174005 0.8773444112572636 1.0 21.368670533372853 2.7303328695760993 24.915143976248697 1.0253283218595353 1.1723695065697892 0.522508177339936 0.07688469130537155 522.5787030948563 1582462.5300516102 0.024289171720262022 0.023257587373036473 537.4435678253403 -2.7303328695760993 0.14704118471025396 SSAWAEGGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSAWAEGGSPR 11 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 SSAWAEGGS(1)PR;SSAWAEGGS(1)PR 168.43 3.6248e-05 406700000.0 356600.0 365090.0 353300.0 385900.0 396140.0 422750.0 425150.0 339090.0 490120.0 405440.0 True False 354680.10522198497 377241.7999484343 403041.5690613493 434754.90043278196 446586.0808942641 393526.28754645813 404583.8702692809 364394.6176641313 369336.49327152467 379564.47208535223 0.934439683654661 0.9938806914036052 1.061852725169488 1.1454046213656666 1.1765750320115336 1.0367837784827405 1.0659160696639243 0.9600335238493825 0.9730533820575082 1.0 18.533985434274694 1.7537674452121392 7.755334496134842 0.9757525490764795 1.0638767858302534 0.24445183515742464 0.06527731400783095 0.20400354745464877 41.10195696989182 0.03472863966552311 0.01871195451566927 56.72407795724354 -1.7537674452121392 0.0881242367537739 SSDEENGPPSS(ph)PDLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 SSDEENGPPS(0.002)S(0.998)PDLDR;SSDEENGPPSS(1)PDLDR 443.03 5.692099999999996e-182 1372410000.0 1091750.0 1231650.0 1141210.0 1232600.0 1267620.0 1269020.0 1248600.0 1157430.0 1368500.0 1299930.0 True False 1085872.1393048284 1272644.7257018515 1301882.4484248601 1388647.0336186758 1429043.8932276142 1181295.6343517583 1188200.4478848034 1243803.3039104505 1031251.5119605024 1216967.3544739361 0.8922771307815591 1.0457509160153136 1.069775983422029 1.141071721039676 1.1742664155895566 0.9706880221634229 0.9763618091451862 1.0220514949212545 0.8473945567802729 1.0 20.214859037153747 2.5764411078667355 24.999998986781502 0.9704731973332013 1.0685497761434248 0.2751431825858772 0.08169698231821018 62.07708645492177 15615.559866305828 0.027357305904980277 0.025792708191863033 377.0866070360895 -2.5764411078667355 0.09807657881022358 SSDELDAWTDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSDELDAWTDFR 12 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 0 ;; 226.29 3.6455e-11 251223000.0 336204.0 445220.0 423488.0 401771.0 428440.0 437250.0 455590.0 386058.0 445481.0 411900.0 False True 334393.9150197757 460038.8785588268 483111.4293763167 452635.16740549146 482999.29443716456 407023.9366757866 433551.3711771887 414867.60832280206 335698.1766895706 385612.18935466814 0.8671767237944227 1.193009171542823 1.2528427334852046 1.1738092827485251 1.2525519363002404 1.0555266350810943 1.1243196743929387 1.0758674641927 0.870559038217568 1.0 18.556791130889504 1.4401324707269374 3.495587110859598 0.9370347569479497 1.1405099735810398 0.3247504659601732 0.10991875044484731 0.2497438193974343 5.563488697460464 0.08051833633950656 0.028202056879633463 27.55068940422145 -1.4401324707269374 0.2034752166330901 SSDQPLTVPVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSDQPLTVPVSPK 13 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK 246.38 3.7125000000000005e-17 2740830000.0 4527270.0 2962540.0 2610320.0 2516550.0 2352900.0 4235450.0 4072500.0 3590500.0 6663300.0 4514960.0 True False 4502895.6813469855 3061146.3530067536 2977830.366691827 2835144.9719723146 2652527.8682690836 3942663.310676867 3875497.6165392105 3858441.3421895755 5021218.998645538 4226811.387348268 1.065317391456145 0.7242211853051702 0.7045098760746924 0.6707526577737766 0.6275481977285893 0.9327748388485193 0.9168844458353137 0.9128491878626755 1.187944892377999 1.0 22.011138305868798 1.9588410035311488 1.1923730985503467 1.0608596323166386 0.7581036023047555 0.43811208739131335 0.13220265726540648 0.44573779082474707 1.1698053050748998 0.10226848396600445 0.046135077345968084 90.95802117162917 -1.9588410035311488 -0.3027560300118831 SSDSWEVWGSASTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDSWEVWGSASTNR 15 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 0 ; 182.25 1.2901e-06 260606000.0 164778.0 182352.0 174780.0 153982.0 169195.0 216733.0 214719.0 210080.0 197085.0 259830.0 False True 163890.8535565569 188421.47608588805 199387.50478500625 173476.1054118698 190740.98035266585 201750.75784460444 204332.22166376488 225757.2363646246 148516.04255369812 243247.42694834524 0.6737619205787525 0.7746083008964376 0.8196900879339913 0.7131672782245227 0.784143876651039 0.8294055167434399 0.8400180188017192 0.9280971198620952 0.6105554513644916 1.0 17.89206501881218 2.7888562830784083 2.569415153642506 0.8468939438285337 0.7522827264278685 0.1718625591684626 0.09946052802724883 0.5296998269656479 6.901490646497057 0.03245332303948932 0.033385118423557465 614.9733317874765 -2.7888562830784083 -0.09461121740066514 SSDTSST(ph)SPLNSSASQEELHQDEGLVAAPIVSNSEKPIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSDTSSTSPLNSSASQEELHQDEGLVAAPIVSNSEKPIAK 40 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 S(0.002)S(0.002)DT(0.063)S(0.063)S(0.063)T(0.411)S(0.365)PLNS(0.011)S(0.011)AS(0.011)QEELHQDEGLVAAPIVSNSEKPIAK 122.37 2.2884e-08 355910000.0 109900.0 74657.0 72012.0 86640.0 89945.0 107720.0 121360.0 103570.0 139780.0 120960.0 True False 109308.31061103796 77141.91311389046 82150.66366047537 97608.6151166007 101398.96260421727 100273.56994560488 115489.35315977877 111298.91931780374 105333.09195603893 113240.22924093377 0.9652780760313534 0.6812235689647069 0.7254547629507957 0.8619605927229739 0.8954323325191915 0.8854942330808905 1.0198615274264387 0.9828567114695641 0.9301737788955606 1.0 16.789027049354956 2.9622379823528875 1.2400847222510847 0.980063936064404 0.7851451890487743 0.49268450813435194 0.07675845377020575 0.346655471099614 1.1187377068870636 0.03179958028727967 0.037030185177890855 916.7226932799448 -2.9622379823528875 -0.19491874701562972 SSDTSSTS(ph)PLNSSASQEELHQDEGLVAAPIVSNSEKPIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDTSSTSPLNSSASQEELHQDEGLVAAPIVSNSEKPIAK 40 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 SSDT(0.003)S(0.003)S(0.003)T(0.133)S(0.857)PLNSSASQEELHQDEGLVAAPIVSNSEKPIAK;SSDT(0.005)S(0.004)S(0.025)T(0.142)S(0.824)PLNSSASQEELHQDEGLVAAPIVSNSEKPIAK 230.41 5.401699999999999e-41 979700000.0 356780.0 319080.0 326970.0 295090.0 292310.0 416130.0 459840.0 381340.0 497910.0 442090.0 True False 354859.13612198416 329700.38491206715 373004.5339258122 332448.36374374054 329533.9458428898 387363.91256465466 437595.782440612 409797.5272052839 375206.7521521769 413875.4377077089 0.8574056438028975 0.7966174236822223 0.9012482982603067 0.8032570514090894 0.7962152759488386 0.9359432265662079 1.0573127626618304 0.9901470101124847 0.9065692669038239 1.0 18.658837105829928 2.5580498809436976 4.559315212047021 0.9913559156721781 0.8323234107284826 0.7305455301501838 0.045444300526425604 0.11309360903908795 4.235865519931183 0.015207418809403513 0.014062548836764955 361.4513747957061 -2.5580498809436976 -0.15903250494369547 SSDYQFPS(ph)SPFTDTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDYQFPSSPFTDTLK 16 0 Q9UK61-3;Q9UK61 Q9UK61-3 FAM208A Protein FAM208A 1 SSDYQFPS(0.873)S(0.126)PFT(0.001)DTLK;SSDYQFPS(0.496)S(0.496)PFT(0.008)DTLK 154.69 3.4715000000000003e-07 91504000.0 202760.0 189036.0 158032.0 155907.0 159940.0 201697.0 208393.0 179718.0 249325.0 204023.0 True False 201668.36268875393 195327.94898532488 180281.53196123184 175644.8102144951 180307.41096134862 187754.16113366728 198312.23445143158 193129.46974951267 187882.1945338346 191002.077467122 1.0558438178425988 1.0226482956393368 0.943872099989407 0.919596333944219 0.9440075906629115 0.9829953873982664 1.0382726569325818 1.0111380583426213 0.983665712045334 1.0 17.543228804505244 2.455849786906282 21.79906981723089 1.0104675085147292 0.9735512064178247 0.12056965166403633 0.03930506565776812 111.93786024109279 114710.6578244026 0.015079250267509732 0.012618877384781362 285.6602335352943 -2.455849786906282 -0.03691630209690455 SSDYQFPSS(ph)PFTDTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSDYQFPSSPFTDTLK 16 0 Q9UK61-3;Q9UK61 Q9UK61-3 FAM208A Protein FAM208A 1 SSDYQFPS(0.047)S(0.953)PFTDTLK;SSDYQFPS(0.127)S(0.873)PFTDTLK 292.38 1.5194e-45 398540000.0 1039300.0 897620.0 801240.0 809100.0 822320.0 1054910.0 1098530.0 1039140.0 1379690.0 1073830.0 True False 1033704.5242770847 927496.7390772526 914047.6274970736 911531.9770411084 927037.5777274998 981986.5546910331 1045389.9071078745 1116685.9034460026 1039683.8863988213 1005297.2500478842 1.0282575867265602 0.9226094461444853 0.9092312024662713 0.9067288078204635 0.9221527042706456 0.9768121365538991 1.0398813953366337 1.1108017090396027 1.0342054415739217 1.0 19.939190715268733 2.320847092920143 2.767561402470803 1.063375633428171 0.9344324350808256 0.5861472573645639 0.04224965066420058 0.1613822470725461 2.525743531765044 0.01689523464687991 0.012972702672200225 209.33752872443355 -2.320847092920143 -0.12894319834734536 SSEAVIWEVLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSEAVIWEVLR 11 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 0 ;; 117.02 0.0021181 105181000.0 377171.0 495432.0 464114.0 467170.0 449712.0 519317.0 533058.0 490297.0 621482.0 518656.0 False True 375140.3532436376 511922.1546250314 529457.217048795 526313.6740999803 506980.1575481434 483417.83813072456 507271.94806068926 526885.4518177186 468326.0885321429 485554.93003625795 0.7726012651454793 1.054303278491693 1.0904167258877562 1.0839426016345437 1.0441252393633107 0.9955986608860633 1.0447261816964966 1.0851201773986197 0.9645172143493044 1.0 18.88927498904766 4.739549943169529 24.89968360352646 1.0465359801523377 0.7726011738023577 0.7966934532273824 0.040460129200386025 32.50099495502552 817873.217842123 0.009579365959770115 0.05851031825504153 54897.16828410946 -4.739549943169529 -0.27393480634998 SSECMKDDPITLFVALSPQGTAQGELFLDDGHTFNYQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSECMKDDPITLFVALSPQGTAQGELFLDDGHTFNYQTR 39 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 128.39 6.9512e-09 215898000.0 120508.0 124838.0 118304.0 115382.0 75646.0 141076.0 151820.0 135493.0 178236.0 137625.0 False True 119859.19831769739 128993.15736383527 134960.17488319805 129989.34936961709 85279.06971103024 131323.74817718304 144475.88659127883 145604.17567951305 134312.1260400382 128841.65467330959 0.9302829789140159 1.0011758828378123 1.0474886807795396 1.0089077922758567 0.6618905192366826 1.019264681986327 1.121344544647547 1.1301017209745283 1.0424588723313086 1.0 16.97523956847298 2.4807868879079376 24.94740041362997 1.0880157315499308 0.9343982627831257 0.29264948938236546 0.10477690858827196 186.7716762782908 1271136.9773633354 0.03733876003086455 0.03187718028108283 302.542845964161 -2.4807868879079376 -0.15361746876680515 SSEDEELRK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEDEELRK 9 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 86.898 0.02217 631060000.0 280210.0 265540.0 225280.0 256590.0 242780.0 272430.0 244720.0 253120.0 337280.0 278600.0 False True 278701.38049425796 274378.3383776805 256997.46583113717 289074.26769123465 273696.5939301999 253597.55533123956 232881.95867881543 272009.09971731657 254161.8633204521 260819.50947854 1.0685603276053597 1.0519854857723214 0.9853460208745722 1.1083306930113654 1.0493716305095628 0.9723105293705236 0.8928855021022756 1.0429016612336557 0.974474125147315 1.0 17.9926922626225 2.742865779266703 21.18319222501841 0.9774609812118368 1.0520247376060265 0.4219915031950815 0.04458231557794576 46.37976962506986 228206.38538571654 0.01404317335832746 0.014378627762799755 553.1791202098952 -2.742865779266703 0.07456375639418977 SSEEIESAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEEIESAFR 10 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3;A0A0D9SFH4 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 112.8 0.003658400000000001 522070000.0 183550.0 237940.0 237280.0 240770.0 224680.0 262100.0 216320.0 198630.0 259310.0 225590.0 False True 182561.78719432215 245859.68906223288 270686.96152526786 271251.45731329557 253291.66621730526 243981.64391703525 205855.77517735114 213452.77922270301 195406.5250759795 211192.6530626839 0.8644324721851766 1.1641488730635885 1.2817063358966636 1.284379230904333 1.1993393829951366 1.1552563045108357 0.9747298127660305 1.0107017272014112 0.9252524756056787 1.0 17.688200121754416 2.262491437893342 5.700319952555739 0.9812272495499769 1.1728266095416813 0.38182025390569607 0.11168640874412565 0.1839837581447811 17.604335978080098 0.041872008503319895 0.033640164904376525 183.01700241914997 -2.262491437893342 0.1915993599917044 SSEELDMDKVTAAMVLTSLSTS(ph)PLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSEELDMDKVTAAMVLTSLSTSPLVR 26 1 Q6ZNC4;E5RGL7 Q6ZNC4 ZNF704 Zinc finger protein 704 1 SSEELDMDKVTAAMVLTSLS(0.004)T(0.258)S(0.739)PLVR;SSEELDMDKVTAAMVLTSLST(0.288)S(0.712)PLVR 149.0 9.8228e-08 243647000.0 195090.0 192517.0 165900.0 157021.0 178011.0 245964.0 226576.0 228408.0 313806.0 235938.0 True False 194039.65711653655 198924.8119660162 189257.2779713498 176899.84250027398 200679.64569613984 228961.08761697705 215615.6532756262 245452.9647923228 236472.71608496754 220880.23484331538 0.878483569406658 0.900600328078818 0.8568321113276713 0.8008857950814859 0.9085450576349435 1.0365847708347193 0.976165447436147 1.1112491118385421 1.0705924695014604 1.0 17.752904801372146 2.7911524922088864 2.8557962925223848 1.0491281861683568 0.8607741941899623 0.8045853502726588 0.04222852886797258 0.11547880562699199 1.8686823043690601 0.01473940269409286 0.015213616629868336 618.2334400442671 -2.7911524922088864 -0.18835399197839453 SSEGPKPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEGPKPEK 9 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 61.353 0.081831 83715000.0 124060.0 107860.0 102040.0 98991.0 99657.0 125920.0 148100.0 145390.0 217300.0 142110.0 False True 123392.07474436166 111450.0548972531 116406.34505242038 111523.25045022422 112347.72823668314 117215.44678379653 140935.8372030587 156239.74007546078 163749.32667081998 133040.41813350783 0.9274781038386098 0.8377157593221894 0.8749697774972796 0.8382659346297991 0.8444631324289787 0.8810514009822885 1.0593460181523762 1.1743779993135028 1.230823902751834 1.0 17.021505082436434 2.1362352606397876 2.868937091318603 1.1501475458323276 0.8614280020400636 0.8087737956008746 0.05995016330876186 0.09604323146228358 1.5801820609572028 0.02497401010033595 0.01662097603609327 136.84699354673714 -2.1362352606397876 -0.28871954379226394 SSEIEQAVQSLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSEIEQAVQSLDR 13 0 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 0 ;;;;; 205.12 1.6846e-07 404593000.0 340064.0 380314.0 367383.0 360862.0 374709.0 383007.0 387884.0 370631.0 471704.0 402677.0 False True 338233.1332086625 392972.5215853324 419107.3330497192 406547.09219998517 422425.97007575276 356530.6275914992 369120.5690592251 398289.36724608333 355458.8697097677 376977.809110876 0.8972229267457544 1.0424287904696057 1.111755978523532 1.0784377286261226 1.120559247431749 0.9457602515978257 0.9791572876128103 1.056532659536305 0.9429172251495069 1.0 18.5241200758407 2.7279253711462306 24.997021004482008 0.9935094392835385 1.0546575859984557 0.19405926126435524 0.06493347777817529 1333.567703505058 3134402.662885865 0.021685326815187724 0.02066788423713169 534.4725081310806 -2.7279253711462306 0.061148146714917195 SSEPEHQEALQPVNLSELESIVTERPQFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEPEHQEALQPVNLSELESIVTERPQFSR 30 1 Q8WXH0;Q8WXH0-2;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;Q8WXH0-7;G3V5N1;A0A669KBH2 Q8WXH0 SYNE2 Nesprin-2 0 77.925 0.0020747 19453000.0 13075.0 18701.0 18474.0 15031.0 17345.0 20625.0 17657.0 15688.0 22079.0 20052.0 False True 13004.605652769058 19323.451480006777 21074.97862111343 16933.92305883686 19553.782938130505 19199.24229602767 16802.86345370972 16858.718222049865 16637.92629344242 18772.26419261909 0.6927563728770784 1.029361790444245 1.1226657799435682 0.902071422236587 1.0416315654570156 1.022745157378323 0.895089866693667 0.8980652546259392 0.8863036511058769 1.0 14.196315049028867 -0.6607946860831082 7.6305974620749595 0.9999999977123954 0.9493985065097769 0.01960760661497729 0.11312509567933773 0.0 0.0 0.1070818435949773 0.02523943277070367 0.21837620473960506 0.6607946860831082 -0.05060149120261859 SSEPVKETVQTTQS(ph)PTPVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSEPVKETVQTTQSPTPVEK 20 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 SSEPVKETVQT(0.001)T(0.005)QS(0.99)PT(0.005)PVEK;SSEPVKETVQTTQS(1)PTPVEK;SSEPVKETVQTT(0.071)QS(0.928)PTPVEK;SSEPVKET(0.004)VQT(0.019)T(0.159)QS(0.818)PTPVEK 259.29 1.6631e-36 6886140000.0 4894930.0 4166490.0 3802140.0 3406860.0 3720410.0 5250730.0 5185820.0 4804660.0 6982110.0 5392390.0 True False 4868576.240757852 4305169.100953604 4337448.263206679 3838168.126686772 4194182.1609022813 4887759.393988908 4934962.074843803 5163208.126769123 5261462.5459806705 5048243.053542649 0.964410031197148 0.8528054325618125 0.8591995704649832 0.7602978077676555 0.830820171774213 0.9682099974482964 0.9775603160352293 1.022773284092531 1.0422363761365239 1.0 22.26734994155019 2.57901249074048 3.038268412753569 1.010901695582965 0.8487157269665213 0.697773385976276 0.04934614286894618 0.15279827660508227 2.7145373891119537 0.018335700369769666 0.016740403634679133 379.32589460613 -2.57901249074048 -0.16218596861644374 SSEPVQADESQS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSEPVQADESQSPR 14 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 SSEPVQADES(0.035)QS(0.965)PR;SSEPVQADES(0.334)QS(0.666)PR;SSEPVQADES(0.022)QS(0.978)PR 144.41 6.6335e-06 509999000.0 155847.0 172470.0 164232.0 187304.0 185628.0 214991.0 172224.0 167746.0 233588.0 207859.0 True False 155007.93706822948 178210.55968968355 187354.4380698656 211016.66719528814 209266.62549664374 200129.17820437756 163892.86716042968 180264.05831692848 176023.36731883834 194593.26066295718 0.7965740259458884 0.9158105428859169 0.9628002400061043 1.0843986398931713 1.0754053084042894 1.0284486601568839 0.8422330074642116 0.9263633165033016 0.9045707272654082 1.0 17.570102220647854 4.653371888711685 2.3069675666426326 0.9743564787866004 0.771396239220237 0.3777218478855787 0.07117919614291342 0.597800182936279 4.325281071162881 0.020603554526687353 0.22664756621102874 45016.516876317335 -4.653371888711685 -0.20296023956636333 SSEPVQHEES(ph)IRKPSPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSEPVQHEESIRKPSPEPR 19 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 SSEPVQHEES(0.767)IRKPS(0.233)PEPR 142.42 7.3768e-08 555020000.0 77433.0 87007.0 102630.0 92984.0 96846.0 110410.0 126480.0 116510.0 137690.0 114490.0 True False 77016.109331615 89902.97539815787 117079.41192404839 104755.76486613559 109178.76404878555 102777.61657718375 120361.67919947921 125204.56782579214 103758.14445147372 107183.15018017944 0.7185467977209818 0.838778998816765 1.0923303870732752 0.9773529205853411 1.0186187275262149 0.9588971438552628 1.1229533653111157 1.168136667147009 0.9680452970177856 1.0 16.709718597936178 4.39247416143156 3.5689599255135134 1.0493129617142056 0.7369913141834413 0.7085205135125734 0.06804130424998495 0.12162380200477847 2.9350818355551125 0.01873416692735188 0.06442748180963248 24687.332220131968 -4.39247416143156 -0.3123216475307643 SSEPVQHEESIRKPS(ph)PEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSEPVQHEESIRKPSPEPR 19 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 SSEPVQHEES(0.257)IRKPS(0.743)PEPR;SSEPVQHEES(0.005)IRKPS(0.995)PEPR;SSEPVQHEES(0.04)IRKPS(0.96)PEPR 173.47 3.3144e-12 1981660000.0 956390.0 1078160.0 1011490.0 1162720.0 1113250.0 1245070.0 1439650.0 1177500.0 1746980.0 1336870.0 True False 951240.902504918 1114045.903838518 1153898.9999713122 1309920.2327836312 1255015.7887502888 1159001.2414795244 1370008.6295029272 1265371.0292238467 1316460.1873326695 1251549.81204801 0.7600503738227784 0.8901330918787136 0.921976088257403 1.0466385118464483 1.0027693477869706 0.9260528269210148 1.0946497025644337 1.0110432817318074 1.0518639966702097 1.0 20.255284281177047 5.233200814119051 0.7129781522074496 1.0258886686240134 0.3715597804113199 0.776127190787425 0.043996430113497416 2.3553434027863758 0.5523557836919265 0.016329649415840836 1.4542174957018432 171080.6194636647 -5.233200814119051 -0.6543288882126935 SSESPSS(ph)SPSS(ph)PARK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSESPSSSPSSPARK 15 1 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 2 SSESPS(0.003)S(0.988)S(0.01)PS(0.166)S(0.832)PARK;SSES(0.001)PS(0.093)S(0.902)S(0.006)PS(0.206)S(0.792)PARK 110.12 0.0033108000000000005 676110000.0 712960.0 637740.0 587970.0 585720.0 589010.0 720650.0 733920.0 627590.0 862700.0 682790.0 True False 709121.5025773032 658966.7903780293 670751.0652731434 659872.091944775 664016.9321642113 670833.1617276286 698417.4857533361 674423.9526374473 650099.1445877436 639213.7576340707 1.1093652070349407 1.0309020769782409 1.0493376546772117 1.0323183505736284 1.0388026293769785 1.0494660881683635 1.0926196087180553 1.0550836000991288 1.0170293377194557 1.0 19.2859389337929 0.7719154810192054 0.005338425139444052 1.347518457083674e-07 2.0761059699481947 0.28079747926019305 0.026404673423709463 11455.350303421857 33.056678149500655 6488.64785350714 6364.723549794838 5.914465202984404 -0.7719154810192054 2.076105835196349 SSESPSSSPSS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSESPSSSPSSPAR 14 0 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 1 SSESPSSSPSS(1)PAR;SSESPSSSPS(0.001)S(0.999)PAR;SSESPSSS(0.001)PS(0.186)S(0.813)PAR 282.63 2.2438e-33 229495000.0 339067.0 457480.0 414950.0 419800.0 446550.0 433550.0 435110.0 348505.0 374500.0 391280.0 True False 337241.5009458855 472706.94524750067 473371.3531899435 472946.6369569359 503415.4955907856 403579.70896692364 414062.0670183861 374512.2127725321 282209.4930428997 366308.1754083382 0.9206496703764503 1.2904624493312375 1.2922762443460556 1.2911167937481156 1.3742950045534976 1.1017491174392637 1.130365344854274 1.0223965445353451 0.7704154916234387 1.0 18.482698374471674 1.7828923638181988 1.5155240628500648 0.8914079628001279 1.2328690268618798 0.487422065026476 0.13181883829461366 0.30804448383805977 1.354856149498754 0.09891230655368635 0.040009265768540817 60.658597379905345 -1.7828923638181988 0.3414610640617519 SSESPSSSPSS(ph)PARK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSESPSSSPSSPARK 15 1 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 1 SSESPSSSPS(0.016)S(0.984)PARK;SSESPSSSPS(0.245)S(0.754)PARK 124.29 5.9742e-05 615680000.0 162112.0 178968.0 168194.0 158176.0 171777.0 210064.0 180948.0 165042.0 204624.0 189267.0 True False 161239.20700433644 184924.84169155953 191874.25323154466 178201.06538184916 193651.78274795285 195542.77011746692 172194.8539515133 177358.27210629458 154197.15702112237 177187.81802036898 0.909990363930103 1.0436656636874502 1.0828862580693182 1.0057184933637124 1.0929181526784828 1.1035903726462049 0.9718210646497057 1.000961996641925 0.8702469432937897 1.0 17.43491989387297 1.7291298366505707 2.0749560912245713 0.9419194127034238 1.0406436740440812 0.2549158719980209 0.06298141420998439 0.37581518028926597 3.3280145284623477 0.042483224817310074 0.017650163196550567 53.59568631941965 -1.7291298366505707 0.09872426134065737 SSFASSSASDASKPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSFASSSASDASKPSSPR 18 1 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 SSFASSSASDASKPS(0.134)S(0.866)PR;SSFASSSASDASKPSS(1)PR;SSFASSSASDASKPS(0.027)S(0.973)PR;SSFASSSASDASKPS(0.001)S(0.999)PR;SSFASSSASDASKPSS(1)PR;SSFASSSASDASKPS(0.031)S(0.969)PR 229.07 1.2579e-19 9273890000.0 8089320.0 6476260.0 6283000.0 6215480.0 6223670.0 9495810.0 9275470.0 8141620.0 12029100.0 9253450.0 True False 8045767.999927947 6691818.399118154 7167591.787184992 7002359.130712485 7016217.483917814 8839387.005432364 8826780.08036364 8749189.026708663 9064689.48668184 8662886.898722881 0.928762904790329 0.7724697871912295 0.8273906690668751 0.8083170440266052 0.8099167824703072 1.0203742827042452 1.018919002817054 1.0099622826656671 1.046382065546555 1.0 23.04641645113727 2.7361312795557797 24.99738946159424 1.0188998469967647 0.8249304993068768 0.8551156050973022 0.03903242033739756 70.75023078659633 728001.0483626381 0.01165003920702936 0.011463889013682848 544.6672712622658 -2.7361312795557797 -0.19396934768988794 SSFATCVLVSEEDKHAIIVEPEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSFATCVLVSEEDKHAIIVEPEKR 24 2 P09467;A0A3B3IUC7;Q5VZC3 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ; 173.89 2.1649e-12 703429000.0 267530.0 218947.0 238800.0 196751.0 178866.0 270595.0 271261.0 244644.0 476636.0 307645.0 False True 266089.64820537716 226234.5185387437 272420.964313191 221659.65642666537 201643.52487815768 251889.40456211416 258139.06911234936 262900.57755706075 359175.4443951815 288010.8327118642 0.923887638877744 0.7855069769722043 0.945870548507216 0.7696226365499981 0.7001247938472116 0.8745830918593012 0.8962824997995836 0.9128148933900532 1.2470900521804775 1.0 18.13576355001334 1.4264400201074845 3.98003772775149 1.121745017188741 0.8404649695936325 0.5916653812372148 0.09120545229984697 0.13934569390266457 3.882599284301989 0.06417001839233652 0.022845916651238543 26.695620516402226 -1.4264400201074845 -0.2812800475951086 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK 30 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 1 SSFDWLTGSSTDPLVDHT(0.48)S(0.48)PS(0.01)S(0.014)DS(0.017)LLFAHK;SSFDWLTGSSTDPLVDHT(0.648)S(0.348)PS(0.002)S(0.002)DSLLFAHK 179.8 1.6423e-17 1168000000.0 378590.0 368950.0 359410.0 357080.0 368040.0 460880.0 435000.0 393020.0 559310.0 454070.0 True False 376551.7135053029 381230.2777150157 410011.80395227735 402286.29138776293 414907.71245601284 429020.4503948237 413957.38813862664 422349.1481151225 421475.5448700245 425090.8638511153 0.8858146470002404 0.8968206803158644 0.9645274429983532 0.9463536518833784 0.9760447653406426 1.0092441096195488 0.973809186084065 0.9935502830826469 0.9914951854096845 1.0 18.697411727019336 4.481392846625364 0.6689492862158312 0.9935204996397047 0.8294110841399992 0.8760862468236054 0.014146693727072817 0.7278931303985524 0.3092681864135956 0.006015750825544047 0.08649110596917307 30296.527000718874 -4.481392846625364 -0.16410941549970548 SSFDWLTGSSTDPLVDHTS(ph)PSSDSLLFAHK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK 30 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 1 SSFDWLTGSSTDPLVDHT(0.272)S(0.679)PS(0.022)S(0.022)DS(0.005)LLFAHK;SSFDWLTGSSTDPLVDHT(0.049)S(0.877)PS(0.058)S(0.012)DS(0.004)LLFAHK;SSFDWLTGSSTDPLVDHT(0.006)S(0.993)PSSDSLLFAHK 413.46 5.977899999999996e-175 1744890000.0 507192.0 585889.0 590066.0 507394.0 537004.0 648024.0 648114.0 529314.0 721902.0 681349.0 True False 504461.33462632855 605389.9611876205 673142.1638543853 571630.0283757212 605388.2763279228 603227.6261644136 616762.2497840872 568814.0984820314 543998.9250912027 637864.7234877731 0.7908594346901492 0.9490883237395789 1.0553055202264816 0.8961618464336952 0.9490856823335947 0.945698365111073 0.9669170077500133 0.8917472271735288 0.8528437222812344 1.0 19.28289096825979 -0.527244552491462 7.51412367271938 0.9999999988962145 0.926894575365749 0.103453478536631 0.06752679550509692 0.0 0.0 0.06400643259797249 0.015086460843195352 0.29699931489612347 0.527244552491462 -0.07310542353046545 SSFFIEPQKPVFPETR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSFFIEPQKPVFPETR 16 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 0 122.14 8.658799999999999e-05 397630000.0 219490.0 203400.0 202150.0 196080.0 178400.0 214220.0 226870.0 209580.0 309030.0 218610.0 False True 218308.29022763163 210170.04604210335 230610.9628807015 220903.7078954645 201118.18254035639 199411.4756196384 215895.43137243757 225219.923825676 232873.69728984634 204658.12263856258 1.0666974142686532 1.0269323461608955 1.1268107021971125 1.0793791374974768 0.9827031536663808 0.9743638466371058 1.0549077094473338 1.100469020833474 1.1378668693307326 1.0 17.64285640121206 -1.0121614639419791 4.685879932559892 0.999998580658118 1.0603920528494426 0.11058643811363511 0.05196754931392408 8.247352821095863e-07 1.7394814553007927e-07 0.05386426207776378 0.012695629985893969 0.09723856386899833 1.0121614639419791 0.060393472191324626 SSFFSDR ddPTM_BT-474_Trastuzumab_2h_R1 7 SSFFSDR 7 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ;;;;;; 137.18 0.006765300000000001 4258210000.0 3684560.0 4426280.0 4150120.0 4103460.0 3698440.0 4262020.0 4278180.0 3746680.0 5491610.0 4322590.0 False True 3664722.7383531025 4573606.054057241 4734420.822510295 4622957.6152627645 4169414.4116286784 3967396.5891159177 4071228.08916531 4026276.2868555444 4138276.299303922 4046718.605444513 0.9056035508430293 1.1302011580206854 1.1699407060675129 1.1423966096982803 1.030319826542693 0.9803984353589908 1.0060566315848654 0.9949484210339051 1.0226251693745707 1.0 21.948321101888677 3.0557431923872995 6.302856467266965 1.0008710331293407 1.095661633745035 0.2613756212125611 0.06781755457223061 0.2541430556026583 21.11395425388921 0.019972237401683236 0.02386494321046354 1136.9547813387103 -3.0557431923872995 0.09479060061569422 SSFFSDRGS(ph)GSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSFFSDRGSGSR 12 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 1 SSFFSDRGS(0.983)GS(0.017)R;SSFFSDRGS(0.746)GS(0.254)R;SSFFSDRGS(0.668)GS(0.332)R;SSFFSDRGS(0.993)GS(0.006)R 151.8 4.1948e-05 930290000.0 720970.0 616440.0 580312.0 614680.0 711230.0 591640.0 673910.0 576130.0 906740.0 631800.0 True False 717088.377627297 636957.8327541507 662014.8854376738 692498.4249754393 801800.9247095158 550741.3193707541 641310.3987137974 619123.7461288613 683286.0766935091 591477.9830888058 1.21236698259254 1.0768918725052805 1.1192553304867097 1.1707932412954518 1.3555887922021463 0.9311273371405687 1.0842506687480702 1.0467401388225548 1.1552181082468442 1.0 19.17396494176812 2.7203633750602507 24.9995767379304 1.049735297038745 1.176201639447929 0.40182986575880675 0.08688534288122923 974.885914119344 1339307.4443085766 0.028232923877597408 0.02666605000849063 525.2467514520363 -2.7203633750602507 0.12646634240918408 SSFQITSVTTDYEGPGS(ph)PGASDPPTPQPPTGPPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSFQITSVTTDYEGPGSPGASDPPTPQPPTGPPPR 35 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 SSFQITSVTTDYEGPGS(0.99)PGAS(0.01)DPPTPQPPTGPPPR 144.92 7.0016e-11 204470000.0 10665.0 11037.0 10063.0 10744.0 6607.7 13798.0 10676.0 9109.8 11838.0 11090.0 True False 10607.580824992894 11404.359872992613 11479.78293083601 12104.189298392868 7449.151428093683 12844.176736998297 10159.561093719496 9789.619534627085 8920.683521073026 10382.226705373323 1.0217057598542842 1.098450283992574 1.1057149161359237 1.1658567706028171 0.7174907309853265 1.2371312148626836 0.9785531930699812 0.9429209949307373 0.8592264236010301 1.0 13.341828275295596 2.5196755833379836 0.6270373717912665 0.9309544274424537 1.0824464906353712 0.11077972665889269 0.13561006578299406 1.690632069127754 1.3670792421631466 0.11010176422439232 0.09701734959569247 330.883859901535 -2.5196755833379836 0.15149206319291753 SSFSQHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 114.89 0.0025684 205461000.0 125452.0 234880.0 410000.0 213168.0 88615.0 112772.0 224660.0 121367.0 375050.0 165563.0 False True 124776.58037102755 242697.83881204165 467724.4362161146 240155.04694339228 99899.59498774471 104976.33707673378 213792.33751545727 130424.02182913835 282623.9529125221 154996.62759438422 0.805027711296787 1.565826576866986 3.0176426640721377 1.5494211110957972 0.6445275393292766 0.6772814267381986 1.379335414154542 0.8414636102305998 1.8234200143510864 1.0 17.241877300221567 3.467496342771456 21.914339142389924 1.047581556215238 1.858198128606678 0.23778497852837166 0.5996057001876751 59.25206885332413 134904.68136557925 0.16793509634132026 0.22787888455780447 2934.244794341988 -3.467496342771456 0.81061657239144 SSFTPS(ph)SPENVIGDFLLQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSFTPSSPENVIGDFLLQDR 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 SSFTPS(0.5)S(0.5)PENVIGDFLLQDR 89.98200000000001 0.0020995 25929000.0 28192.0 39273.0 35055.0 31347.0 36930.0 32805.0 40156.0 35420.0 38438.0 38545.0 True False 28040.21740442567 40580.178063970154 39990.43929647784 35315.52698591966 41632.816598740785 30537.26756466365 38213.500869183226 38063.2202591156 28965.4699428117 36085.02509996524 0.7770596619164519 1.1245711469384359 1.1082281136203604 0.978675416965518 1.1537422097783405 0.846258731428541 1.0589850156213425 1.0548203902774136 0.8027005624235966 1.0 15.13911263782098 2.7432900434676926 24.99610637230872 0.972990146790692 1.0354613422296814 0.07134244060287975 0.12534043058275945 1332.7571151114073 7043949.064541598 0.0379153443172842 0.03903048924154599 553.7197873871548 -2.7432900434676926 0.06247119543898949 SSFTPSS(ph)PENVIGDFLLQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSFTPSSPENVIGDFLLQDR 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 SSFT(0.008)PS(0.102)S(0.889)PENVIGDFLLQDR;SSFTPS(0.197)S(0.803)PENVIGDFLLQDR;SSFTPS(0.025)S(0.975)PENVIGDFLLQDR;SSFTPS(0.027)S(0.973)PENVIGDFLLQDR 241.08 1.0452e-29 468587000.0 256876.0 332374.0 301241.0 314649.0 309462.0 335482.0 323407.0 300342.0 347518.0 319699.0 True False 255493.00815760682 343436.8676656743 343653.1143662891 354483.531138311 348870.15137502144 312290.91897968226 307762.56787528505 322755.0451457738 261876.8454026236 299295.5361119156 0.8536479076055123 1.1474840959113166 1.1482066148750942 1.1843929774006352 1.1656376700672488 1.0434199020693289 1.0282898698502585 1.0783824220655465 0.874977451400077 1.0 18.191211236142095 1.3075185962929121 7.432281402773621 0.9383531551535637 1.0880107821302605 0.26433781699627956 0.09532859805902083 0.2644713103976218 23.61580161587392 0.06497032016224899 0.023446897054195254 20.3010544619385 -1.3075185962929121 0.14965762697669682 SSFVCVLLSHGEEGIIFGTNGPVDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSFVCVLLSHGEEGIIFGTNGPVDLK 26 0 P42574;A8MVM1 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 0 ; 182.53 1.8532999999999998e-17 311130000.0 321830.0 251730.0 259150.0 224070.0 230079.0 338460.0 321140.0 291560.0 422550.0 339000.0 False True 320097.3030386743 260108.68087600148 295636.06742781994 252437.23902558547 259378.19686492527 315063.0568491405 305605.2313260656 313317.68771168124 318418.2143799128 317364.7297674982 1.0086101983455376 0.8195891240547033 0.9315340984626845 0.795416803910508 0.8172874063697817 0.992747546584512 0.9629464230317981 0.9872479778745993 1.0033194760274287 1.0 18.275782278044954 2.7235775981596264 24.544977025787315 0.9861846686094917 0.8702140517401488 0.4841129471565435 0.05911097134504552 535.0865796684251 876569.8645607363 0.018522420544839498 0.017530636281435915 529.1485351006011 -2.7235775981596264 -0.11597061686934296 SSFVSDNSLNRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSFVSDNSLNRSPR 14 1 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 SSFVSDNS(0.06)LNRS(0.94)PR;SSFVSDNS(0.005)LNRS(0.995)PR;SSFVSDNS(0.015)LNRS(0.985)PR 113.88 0.0003087 1590990000.0 1088950.0 1367300.0 1269150.0 1354140.0 1275510.0 1377820.0 1479090.0 1266370.0 1534410.0 1357900.0 True False 1083087.2141937185 1412809.7539496967 1447835.2883504443 1525573.9851568963 1437938.6379599222 1282574.546439411 1407540.766027499 1360872.9598965624 1156275.2155406037 1271237.6594433198 0.8519942798642441 1.1113655605265595 1.1389178707815006 1.200069848327929 1.131132819483653 1.008917991779016 1.1072207903625721 1.0705102620170128 0.9095665212175522 1.0 20.27780233849341 1.319553671574731 6.486549209615062 0.9558921113683418 1.085808967364984 0.22013735798005385 0.09156067838506958 0.276308918748988 17.07734872157962 0.06320844632497949 0.02260698389505639 20.871500450084884 -1.319553671574731 0.12991685599664216 SSGEIVYCGQVFEKS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSGEIVYCGQVFEKSPLR 18 1 Q02543;M0R3D6;M0R1A7;M0R117;M0R0P7 Q02543 RPL18A 60S ribosomal protein L18a 1 SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR 280.4 1.7487e-39 7508560000.0 4863490.0 4252190.0 4198870.0 3967270.0 4106280.0 5371430.0 5369070.0 4940690.0 6716560.0 5431890.0 True False 4837305.510224534 4393721.573646865 4790034.398767697 4469525.975226646 4629190.41817161 5000115.687086148 5109347.572260814 5309389.376115465 5061353.785292973 5085222.129725006 0.9512476322221388 0.8640176302159812 0.9419518511823056 0.8789244326419119 0.9103221649084466 0.9832639675381377 1.0047442259001402 1.0440820952697656 0.9953063319903934 1.0 22.27787936375177 2.596765981486942 2.5095391882314915 1.017281643121317 0.9060112045974404 0.7583501322965945 0.027390854760858913 0.12347479216428452 1.5273908457424763 0.009396759820187724 0.008568368944903674 395.1536351260031 -2.596765981486942 -0.11127043852387652 SSGGGYGGGPAGGHGGNR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSGGGYGGGPAGGHGGNR 18 0 Q9H2U1-2;Q9H2U1;Q9H2U1-3 Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 0 ;;; 178.85 8.6647e-14 55029400.0 32215.9 41607.700000000004 36886.9 38171.799999999996 41455.700000000004 39871.9 42223.0 39611.299999999996 44697.7 39738.8 False True 32042.453173922986 42992.5871421142 42080.254893317586 43004.34596615715 46734.83766781532 37115.649401356866 40180.51218247638 42567.296348105774 33682.55075349431 37202.635761901656 0.8612952420628462 1.155632827127316 1.1311095042467658 1.155948902152704 1.2562238322822108 0.9976618226433872 1.0800447699360134 1.1442010888835445 0.9053807630476499 1.0 15.183117217708467 1.2405422868873721 24.99820622537053 0.9526903541697336 1.1056031194326326 0.23784526392574634 0.1031173931466485 65.1753855334095 822261.1116480392 0.0748205068660658 0.02422879042130333 17.399721094070458 -1.2405422868873721 0.152912765262899 SSGGGYSGDR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSGGGYSGDR 10 0 Q92804-2;Q92804;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ;;; 185.81 3.276e-06 829341000.0 478019.0 544983.0 510853.0 525961.0 517468.0 430361.0 545047.0 492909.0 655491.0 530350.0 False True 475445.39881690394 563122.4297058195 582776.6619861234 592547.6086720037 583364.4825268674 400611.15703082527 518680.9943282623 529692.3725211861 493954.02617939573 496502.6089445209 0.9575889235055965 1.1341781887167137 1.1737635442138086 1.1934430917325047 1.174947466574244 0.8068661670931713 1.0446692222441465 1.0668471081093027 0.9948669297618737 1.0 18.92144177305941 SSGGREDLESSGLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 0 117.48 0.0012369000000000002 0.0 1181600.0 877600.0 780960.0 830060.0 694090.0 988950.0 1113900.0 878990.0 1662400.0 981600.0 False True 1175238.396888102 906810.3854795977 890912.3797739933 935145.5108920297 782478.2473062549 920586.2142378949 1060016.401488773 944584.6972207798 1252723.7950187353 918953.44760996 1.2788878478498504 0.9867859877320834 0.9694858668750885 1.017620112666406 0.8514884506297314 1.0017767675089324 1.1535039171414978 1.0278917824156188 1.363207024552609 1.0 19.809632253684153 2.2449065403969364 24.76233939021014 1.1271635453313218 1.0065234141983976 0.1515890315696078 0.1351151489997188 251.73634210164866 982300.3510410036 0.04663415703282332 0.03812431909863778 175.75453518041576 -2.2449065403969364 -0.12064013113292416 SSGGSGGGPLSHFYSGS(ph)PTSYFTSGLQAGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGGSGGGPLSHFYSGSPTSYFTSGLQAGLK 31 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 SSGGSGGGPLSHFYS(0.005)GS(0.961)PT(0.032)S(0.001)YFTSGLQAGLK 186.59 1.2752e-18 174660000.0 85590.0 93210.0 67516.0 85346.0 92281.0 101890.0 113460.0 119050.0 131160.0 116470.0 True False 85129.19294994303 96312.43850336508 77021.66594040777 96150.79484927749 104032.43835766042 94846.58412326092 107971.50634070949 127934.11552365079 98837.3754539565 109036.78488501634 0.7807382897406152 0.8833022599201765 0.7063824013302501 0.8818197909143447 0.9541040527503336 0.8698585915136845 0.9902300994528568 1.1733115173797763 0.9064590042542475 1.0 16.734455402268253 2.7564261341848364 0.965979688045414 1.0474661422041787 0.8022645469448568 0.5047130058478783 0.08529838294864478 0.4075276267287791 0.8089894948828688 0.049089314280703886 0.046397032921980046 570.7239978520302 -2.7564261341848364 -0.24520159525932184 SSGHS(ph)SSELS(ph)PDAVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 SSGHS(0.947)S(0.052)S(0.002)ELS(0.999)PDAVEK;SSGHS(0.959)S(0.041)S(0.003)ELS(0.997)PDAVEK 200.67 5.108899999999999e-11 686110000.0 1558850.0 1762640.0 1671920.0 1819910.0 1819950.0 2322600.0 2244100.0 2063120.0 2643000.0 2346800.0 True False 1550457.3248045163 1821308.406861617 1907311.8034108456 2050310.4194004235 2051709.844811218 2162044.1288123094 2135544.3097055014 2217080.4907110855 1991668.06438554 2197025.2148034335 0.7057075696526472 0.8289883951216137 0.8681337795121716 0.9332211599509856 0.9338581236969478 0.9840779770048047 0.9720162951778263 1.0091283776683675 0.9065294521727796 1.0 21.06711999669261 5.793968700568638 0.5202823574277469 0.9829667214363825 5.3198863322299826e-08 0.901423233631567 0.027774840741500023 3.0525585247561615 0.2738053921235494 0.013954954829431944 2.318572856397065 622255.4378500766 -5.793968700568638 -0.9829666682375192 SSGHSSSELS(ph)PDAVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SSGHSSSELS(1)PDAVEK;SSGHSSSELS(1)PDAVEK;SSGHSSSELS(1)PDAVEK;SSGHSSS(0.002)ELS(0.997)PDAVEK 300.51 7.1503e-46 5569570000.0 1877620.0 2795020.0 3002200.0 3082730.0 3263120.0 3731100.0 3745210.0 3587640.0 3510800.0 3571060.0 True False 1867511.1025431922 2888050.55107473 3424883.6644098083 3473003.3019205737 3678658.989972462 3473177.8390646707 3564039.8842084296 3855367.9144667895 2645610.382309781 3343151.8934617136 0.5586079131479281 0.8638705757650328 1.0244475194525082 1.0388410136891517 1.1003565219895954 1.0388932210520414 1.06607177830559 1.153213505496663 0.7913521331423403 1.0 21.672777473476543 4.7055107526772195 1.7213227014012165 1.0463806920105936 0.40918430822471696 0.7114862484492503 0.09070226496898263 0.4216066607172893 1.3038857957868037 0.022934831869257065 0.43295909490630013 50758.7306204231 -4.7055107526772195 -0.6371963837858766 SSGNS(ph)PTPVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGNSPTPVSR 11 0 H0YBT1;O95429-2;O95429 H0YBT1 BAG4 BAG family molecular chaperone regulator 4 1 SS(0.002)GNS(0.944)PT(0.054)PVSR 94.355 0.0089851 232000000.0 307250.0 294050.0 275220.0 295910.0 263510.0 332590.0 301940.0 290430.0 389860.0 297970.0 True False 305595.80013868376 303837.27649302105 313968.5837448758 333372.17565966427 297066.4365538639 309598.8361326472 287334.0086771885 312103.3613736574 293784.2268563549 278953.2994950488 1.0955088206228865 1.0892048132895948 1.1255238217766572 1.1950823892856708 1.0649325069522493 1.109859021897471 1.0300434129917448 1.1188373177109416 1.0531663450052482 1.0 18.089664090303863 SSGNSSSSGSGSGSTSAGSSS(ph)PGAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 Q12797;E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2 Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 SSGNSSSSGSGSGSTSAGSS(0.005)S(0.995)PGAR;SSGNSSSSGSGSGSTSAGS(0.002)S(0.099)S(0.899)PGAR;SSGNSSSSGSGSGSTSAGS(0.003)S(0.23)S(0.767)PGAR 256.88 6.879999999999997e-45 545588000.0 428099.0 531985.0 619993.0 445251.0 648792.0 808501.0 617834.0 447289.0 624470.0 644448.0 True False 425794.16255027056 549691.7991332765 707282.6253242382 501619.7309473863 731411.8155085363 752611.2288766374 587947.0090649201 480667.97646752023 470577.7359692916 603318.7769003087 0.7057532085075947 0.911113361923603 1.1723199283769488 0.8314339784426651 1.2123140262040832 1.2474520231963502 0.9745213170484025 0.7967064756994046 0.7799819166693183 1.0 19.202560958043414 -2.6617155698548296 2.1522369288773504 1.9421081950528734 0.9645269679337279 0.003692535277400988 0.18288631140808106 34404749.65854446 4383629.993626763 155094017.54650053 0.04873486788067894 0.002179136475221864 2.6617155698548296 -0.9775812271191454 SSGPYGGGGQYFAKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-2;P09651;P09651-3;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ; 321.81 3.1947e-58 17080000000.0 2010380.0 2697520.0 2206060.0 2389050.0 2483480.0 3183700.0 3277500.0 2872830.0 4224400.0 2906410.0 False True 1999556.337454216 2787305.322514723 2516654.0725827385 2691503.4850451834 2799736.457260786 2963618.3126236745 3118954.803734132 3087215.162535151 3183353.224059887 2720920.4254972124 0.7348823283168318 1.0243979560723022 0.924927480054053 0.9891886068492233 1.0289666801810902 1.0891969808643382 1.1462866662718312 1.1346216278893944 1.1699545470824164 1.0 21.375663334283963 5.9193090932206 0.42079597960855347 1.12665686978238 1.5594076506114613e-15 0.6937149280944321 0.06731883076982406 7.465175115283942 0.4793257818889233 0.04550921692162195 5.181131212743066 830441.5936851235 -5.9193090932206 -1.1266568697823784 SSGQSAQLLSHEPGDPPCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGQSAQLLSHEPGDPPCLR 20 0 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 0 106.44 0.00024138 283030000.0 156010.0 158700.0 169840.0 138930.0 155320.0 177320.0 165110.0 138250.0 216660.0 193810.0 False True 155170.0594943404 163982.23356382403 193751.99572425615 156518.5237551863 175099.08134623384 165062.2857663817 157122.99851854856 148566.91701927548 163267.04609525966 181440.8798709111 0.8552100254625007 0.9037777687172357 1.0678519408751985 0.8626420014417027 0.9650475762177232 0.909730408515533 0.865973526089248 0.8188172209315546 0.8998360579568315 1.0 17.469140015984365 2.417675198277752 4.59864769835911 0.8743487525969711 0.933657904753961 0.01441158488275962 0.07120848332260278 0.4310845293479855 18.667001536709325 0.024717474965684248 0.02068855413724182 261.6225644106817 -2.417675198277752 0.05930915215698995 SSGRNS(ph)PSAASTSSNDSK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSGRNSPSAASTSSNDSK 18 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 SSGRNS(0.889)PS(0.111)AASTSSNDSK;SS(0.003)GRNS(0.96)PS(0.037)AASTSSNDSK;SSGRNS(0.928)PS(0.072)AASTSSNDSK 276.27 2.585e-39 1593530000.0 848660.0 826770.0 765240.0 691860.0 734660.0 953860.0 912160.0 845590.0 1224060.0 952020.0 True False 844090.9088549896 854288.5396569821 872979.1404146819 779449.4050619957 828214.5963290257 887921.9033449196 868035.3360104128 908692.219619016 922406.8145636637 891261.2685346721 0.9470745993963862 0.9585163967256457 0.9794873526255125 0.8745464798930319 0.9292612902282831 0.9962532140600671 0.9739403771439039 1.0195576221022173 1.0349454723643474 1.0 19.765488886617536 2.3308198644576827 1.582634882381861 1.0160526849490108 0.9391484742994207 0.5584763132335948 0.02955121747231461 0.3021592014980381 1.5235778479314226 0.016039258408710462 0.010678486813165654 214.20019628033512 -2.3308198644576827 -0.07690421064959008 SSGS(ph)EGSSPNWLQALK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGSEGSSPNWLQALK 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 S(0.02)S(0.02)GS(0.961)EGSSPNWLQALK 133.48 3.5097e-05 56549000.0 80569.0 77475.0 80679.0 80760.0 72575.0 98051.0 101850.0 98373.0 129000.0 109680.0 True False 80135.22545605747 80053.70854037345 92037.90192556079 90984.20771949057 81816.9960642733 91272.96515722711 96923.12639521646 105714.09278797243 97209.67851143959 102680.12849822784 0.7804355782184331 0.7796416863829216 0.8963555390091791 0.8860936293146621 0.7968143131578316 0.8889058330191162 0.943932655838946 1.0295477258756738 0.9467233819552274 1.0 16.647797480913113 2.2653905183331875 2.221949568065393 0.9942523293237192 0.8323756173569168 0.7411444451459248 0.04268552688632395 0.15910371587636388 1.604400841529459 0.02013698721173433 0.013992894602928586 184.24279711820586 -2.2653905183331875 -0.16187671196680242 SSGS(ph)LGHRPSQEMDK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSGSLGHRPSQEMDK 15 1 Q5SW79;H0Y2V6;H0YB66 Q5SW79 CEP170 Centrosomal protein of 170 kDa 1 S(0.166)S(0.135)GS(0.699)LGHRPSQEMDK;S(0.002)S(0.002)GS(0.996)LGHRPSQEMDK;S(0.004)S(0.004)GS(0.992)LGHRPSQEMDK 134.32 2.1735e-05 1445300000.0 446828.0 320509.0 366190.0 383531.0 359835.0 512700.0 421650.0 446410.0 764550.0 540400.0 True False 444422.3276952574 331176.94831321837 417746.3690194612 432085.9852756811 405657.8543408579 477258.2557659827 401253.17864057916 479723.3810240491 576136.8969451251 505911.2093402831 0.878459143601091 0.654614766779093 0.8257306051079786 0.8540747413743384 0.8018360669846447 0.9433636712425005 0.7931296465318888 0.9482363153202645 1.138810301705743 1.0 18.94852467934693 1.5187584928013709 3.5139799128744587 1.0675174994839327 0.8209798944201526 0.6269078953835603 0.07677353803223866 0.12595742212196986 3.342231106729717 0.05115422749391109 0.019795478006222975 33.01858766213152 -1.5187584928013709 -0.24653760506378009 SSGS(ph)PEPSPAIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSGSPEPSPAIAK 13 0 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 SSGS(1)PEPSPAIAK;SSGS(1)PEPSPAIAK 242.4 6.5402e-17 1426800000.0 1526490.0 1447770.0 1245510.0 1287860.0 1287630.0 1565570.0 1534700.0 1514140.0 2017040.0 1531510.0 True False 1518271.5474489827 1495958.149254555 1420866.981833006 1450902.9439527392 1451602.0481190514 1457345.8308553724 1460460.6978766688 1627132.8154471295 1519967.518951269 1433767.7206083238 1.0589382963684002 1.043375525723124 0.9910022114531605 1.0119511850477043 1.0124387843681966 1.0164448605643353 1.0186173652012611 1.1348650078108635 1.0601211738163363 1.0 20.45137988662073 1.7900825328297614 24.999999996323037 1.079653728938439 1.0205198674758054 0.20282036971502193 0.035781453514370454 135.86526238926098 65944.6806704153 0.015680407041512138 0.008897093730940773 61.67121900096688 -1.7900825328297614 -0.05913386146263355 SSGS(ph)PYGGGYGSGGGSGGYGSR ddPTM_BT-474_Trastuzumab_2h_R1 22 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.002)GS(0.997)PYGGGYGSGGGSGGYGSR;S(0.008)S(0.039)GS(0.953)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.006)GS(0.992)PYGGGYGSGGGSGGYGSR;S(0.136)S(0.136)GS(0.726)PY(0.001)GGGYGSGGGSGGYGSR;S(0.029)S(0.029)GS(0.921)PY(0.021)GGGYGSGGGSGGYGSR;S(0.151)S(0.151)GS(0.69)PY(0.007)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.004)GS(0.993)PYGGGYGS(0.002)GGGSGGYGSR;S(0.067)S(0.067)GS(0.865)PY(0.001)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR 636.71 0.0 33634955200.0 2767774.3 2977819.9 2736183.4 2930443.4 2870206.0 3086351.0 3027966.8 2845179.0 3491772.5 3182802.9 True False 2752872.9106974364 3076934.835241354 3121414.2393875425 3301437.233974872 3235709.7210562006 2872998.819858775 2881492.477927529 3057500.7045062236 2631271.9547293414 2979673.6939873444 0.9238840200027382 1.0326415410688332 1.0475691501677566 1.1079861666184494 1.0859275388394067 0.9641991422269399 0.9670496751849256 1.0261193065119598 0.8830738614227995 1.0 21.506722918185453 2.7206974733494134 24.686627362220136 0.9742888135931083 1.0434567849089438 0.2798130241849932 0.05676369834293124 1003.467683594383 1386778.1077809306 0.018877830280444728 0.017838726881095102 525.6509738511497 -2.7206974733494134 0.06916797131583552 SSGSEGSS(ph)PNWLQALK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGSEGSSPNWLQALK 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 SSGSEGS(0.195)S(0.805)PNWLQALK 163.91 7.934600000000001e-09 120790000.0 251170.0 206140.0 174950.0 169390.0 177400.0 245050.0 223370.0 198080.0 260980.0 244560.0 True False 249817.7286276101 213001.24528573855 199581.4393073396 190834.75663205222 199990.8384678205 228110.2702856524 212564.73974373555 212861.73542985925 196664.97595283296 228951.97142165023 1.09113595780109 0.9303315623933373 0.8717174963293053 0.8335143630652592 0.8735056406197378 0.9963236781462445 0.9284250247938024 0.9297222212506817 0.8589791768625752 1.0 17.804685462020856 4.729096720250222 4.101216412943369 0.9094414318193726 1.1049599998385906 0.5091444743376699 0.05251756804891815 0.17477286122669386 6.423883066969921 0.012874264269176296 0.09959197216987475 53591.59962569015 -4.729096720250222 0.19551856801921796 SSGSGSSVADERVDY(ph)VVVDQQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGSGSSVADERVDYVVVDQQK 22 1 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 SSGSGSSVADERVDY(1)VVVDQQK 116.21 6.0484e-06 0.0 37169.0 37853.0 38325.0 37536.0 42350.0 50871.0 33379.0 36115.0 55974.0 44874.0 True False 36968.886233864105 39112.91422237827 43720.82687312831 42288.05375134723 47743.02147188392 47354.407507453274 31764.330249837298 38810.08468825412 42179.957713173 42010.10290143574 0.8799998971818908 0.9310359061520305 1.0407217277164562 1.0066162858625607 1.1364652351340052 1.1272147468564018 0.7561116982827414 0.9238274131179942 1.0040431896140738 1.0 15.358448699180336 SSGSPYGGGYGS(ph)GGGSGGYGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 SSGS(0.346)PYGGGYGS(0.654)GGGSGGYGSR 322.58 8.9285e-68 289500000.0 177460.0 226340.0 200720.0 209180.0 199970.0 223870.0 237430.0 218030.0 244110.0 239420.0 True False 176504.57507765933 233873.59007458057 228979.63131048446 235662.16655229157 225434.99418494984 208394.393833295 225944.60382932008 234300.50573390684 183952.36140641474 224140.01062222556 0.7874746440301867 1.0434263361785967 1.0215919535063098 1.051406064888102 1.0057775653669745 0.929750976877266 1.0080511873006737 1.0453310191405594 0.8207029208919568 1.0 17.774040677832026 4.746410811070314 24.65029564166289 0.9974130875575987 0.7874745189423783 0.4591960244625559 0.06626287106439938 689.3901984587008 2164683.524152555 0.015251378060341674 0.16544181925414642 55771.30555822647 -4.746410811070314 -0.20993856861522042 SSGSPYGGGYGSGGGSGGYGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ;;; 321.81 2.3734999999999985e-67 437024000.0 40150.5 43281.9 39506.2 35355.1 37193.1 38513.6 41774.4 36705.5 45794.1 41729.1 False True 39934.33416913992 44722.511877038916 45068.32956595384 39831.05203495991 41929.42082422492 35851.24548326261 39753.612678294834 39444.65079675234 34508.75766450162 39065.9131119201 1.0222296367355315 1.1447962767160518 1.1536484360889607 1.0195858451035757 1.0732993928517978 0.9177116987014288 1.0176035707754876 1.0096948376388182 0.8833470131784028 1.0 15.253622715143537 3.1672881532101256 1.6091093245051946 0.9752305602563663 1.1053160375421287 0.49022917393762233 0.057896511609456934 0.31317058500529277 1.680910172327751 0.01945353425815853 0.026423658640107754 1469.9012296458507 -3.1672881532101256 0.13008547728576236 SSGSSSSGLGTVSNS(ph)PASQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSGSSSSGLGTVSNSPASQR 20 0 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y3N9;Q9UPP1-5;H0Y589 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 SSGSSSSGLGTVSNS(1)PASQR 289.78 2.0665e-54 775670000.0 77138.0 82332.0 64246.0 68679.0 75594.0 98158.0 91773.0 82565.0 113460.0 91799.0 True False 76722.69757883754 85072.37084925493 73291.27836375737 77373.75435818349 85220.4478192584 91372.56849907801 87333.58938309473 88726.4195565749 85499.303286108 85940.30922692207 0.8927440251146203 0.9899006835619433 0.852816088550887 0.9003197109040076 0.9916237047069159 1.0632096779848939 1.0162121845814374 1.0324191331717951 0.9948684622526828 1.0 16.391047347717205 3.1227476591158236 4.268800393125329 1.0239224767579378 0.9109182550581296 0.6801213134183148 0.03645297023125143 0.1230334219344241 3.982398520534307 0.010562667204654383 0.01285156175375427 1326.6234173109997 -3.1227476591158236 -0.11300422169980817 SSHKDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSHKDSPR 8 1 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 S(0.133)S(0.133)HKDS(0.735)PR;S(0.001)S(0.001)HKDS(0.998)PR;S(0.002)S(0.002)HKDS(0.997)PR;S(0.015)S(0.015)HKDS(0.969)PR;S(0.035)S(0.035)HKDS(0.93)PR 105.4 0.0026621 1029637000.0 2436900.0 2199420.0 2211500.0 2097440.0 2069650.0 2278760.0 2570690.0 1279151.0 3484370.0 2397380.0 True False 2423780.001165044 2272626.365122532 2522859.977297411 2362975.68894463 2333207.6597233634 2121234.68482405 2446335.9037105422 1374607.7430171648 2625693.7016659267 2244377.155899718 1.0799343571973792 1.012586658685487 1.1240802245138053 1.052842514785519 1.0395791338323594 0.9451328976718697 1.089984318045629 0.6124673562122926 1.1698986040576358 1.0 21.097883703036146 2.379087239043422 1.6702089785900838 0.8980541432984048 1.0616799490351203 0.05296972928976362 0.14264502650956584 0.6093854495299406 3.4503547573828923 0.06774949556492645 0.04811950803185865 239.37965627654455 -2.379087239043422 0.16362580573671548 SSHYDELLAAEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSHYDELLAAEAR 13 0 Q7KZF4;H7C597 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;; 166.62 3.3303e-05 4663270000.0 2867290.0 4110260.0 3804210.0 4201480.0 3992930.0 3952000.0 3943840.0 1845650.0 4295800.0 3559570.0 False True 2851852.8292258703 4247067.519395363 4339809.701213915 4733386.937212545 4501405.967549686 3678807.5420073383 3753061.3922681445 1983381.7750208005 3237157.650770869 3332395.1950987987 0.8557967054508727 1.2744789470474092 1.302309434246213 1.4204158450877282 1.3508019619552443 1.1039529607466827 1.1262353870237392 0.5951820414151081 0.9714206932995214 1.0 21.668128072128635 1.93097431891728 5.980836159792263 0.8179354096025336 1.2304778701172125 0.4456387063860515 0.1791040943422469 0.18250842520175636 12.052428838860399 0.07927972216994317 0.04854276588135278 85.30496692439054 -1.93097431891728 0.4125424605146789 SSHYGGS(ph)LPNVNQIGSGLAEFQSPLHSPLDSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSHYGGSLPNVNQIGSGLAEFQSPLHSPLDSSR 33 0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 S(0.008)S(0.008)HYGGS(0.984)LPNVNQIGSGLAEFQSPLHSPLDSSR;SSHYGGS(1)LPNVNQIGSGLAEFQSPLHSPLDSSR;S(0.001)S(0.001)HYGGS(0.998)LPNVNQIGSGLAEFQSPLHSPLDSSR;SSHYGGS(1)LPNVNQIGSGLAEFQSPLHSPLDSSR;S(0.006)S(0.006)HYGGS(0.987)LPNVNQIGSGLAEFQSPLHSPLDSSR;SSHYGGS(1)LPNVNQIGSGLAEFQSPLHSPLDSSR 452.42 9.324599999999991e-232 5799680000.0 504151.0 641893.0 712380.0 734780.0 700746.0 817516.0 773986.0 419637.0 724528.0 756579.0 True False 501436.7070324417 663258.0204724872 812676.9118820381 827803.072661309 789981.8494530519 761003.0431456658 736545.3402663517 450952.44381350925 545977.7825778006 708293.4804801291 0.7079504765348595 0.9364169496843119 1.1473731359649828 1.1687289174258222 1.1153312450617912 1.074417687184988 1.0398872226906162 0.6366745653338829 0.770835533044438 1.0 19.433987737432876 1.757233325175359 24.99999999999952 0.7697445349699721 1.038945744700593 0.3100791210465418 0.1504960052716299 8.003458617030232 10726.030609244923 0.07156766685613321 0.039688436699915765 57.1785746671446 -1.757233325175359 0.2692012097306209 SSIIVAADESTISWGPSPTFGELGYGDHKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSIIVAADESTISWGPSPTFGELGYGDHKPK 31 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 155.56 2.1533000000000004e-09 1263500000.0 1218570.0 1066840.0 973920.0 948360.0 959250.0 1315290.0 1267070.0 1345600.0 1838440.0 1376170.0 False True 1212009.354515856 1102349.1244816026 1111039.4705356073 1068422.2787624593 1081404.8015798014 1224367.0981596238 1205776.9834225515 1446015.5048183508 1385381.0958338808 1288341.652401586 0.9407515097075067 0.8556341576217175 0.8623795314422449 0.8293004241311479 0.8393773496059562 0.9503434868206676 0.9359139954645366 1.1223851236376983 1.075321203231615 1.0 20.297083798540797 2.084467785616482 1.8876157553557869 1.0758829323139192 0.867237950973128 0.7462966902437405 0.04799854761647922 0.15083566729449485 1.0275702648452705 0.026289121578502588 0.014492352021193589 121.46965153643042 -2.084467785616482 -0.20864498134079124 SSILLDVKPWDDETDMAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSILLDVKPWDDETDMAK 18 1 P24534 P24534 EEF1B2 Elongation factor 1-beta 0 ;;; 277.31 3.5776999999999996e-39 4662737000.0 7462430.0 5531710.0 4995557.0 4376700.0 4553699.0 6970590.0 6696270.0 6328110.0 10767600.0 6353370.0 False True 7422253.106033907 5715829.623360697 5698888.003440157 4930789.7712468365 5133585.575761426 6488729.520303882 6372345.837864465 6800345.70169148 8114069.258447865 5947892.48720628 1.247879500511976 0.9609840183989972 0.958135678426985 0.8289977974304011 0.8630932026433898 1.0909291878192022 1.0713619742742777 1.143320212380906 1.364192321213095 1.0 22.503947139112594 2.1383813489538124 1.702780367340969 1.1809595262768877 0.9676548733601871 0.2615933044443005 0.1362125530632912 0.46631943051734265 2.6146333044661576 0.07828485819852063 0.04398497389051424 137.5249035229492 -2.1383813489538124 -0.21330465291670064 SSILLDVKPWDDETDMAQLEACVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSILLDVKPWDDETDMAQLEACVR 24 1 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;A0A087X1X7;E9PQZ1;H0YE72;H0YE58;P29692-3 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 ; 187.81 1.6426e-17 349718000.0 265820.0 229354.0 203496.0 203853.0 185074.0 254129.0 240410.0 219152.0 346540.0 247338.0 False True 264388.85465537856 236987.909242579 232146.46798105998 229660.7688984812 208642.0768804591 236561.66038531976 228780.44984461408 235506.23507130746 261139.86039809498 231552.67708328477 1.141808671727355 1.023472983459998 1.0025643879624058 0.9918294696108261 0.9010566386387094 1.021632154571175 0.9880276606015072 1.0170741191068184 1.1277773320848643 1.0 17.82098091121261 -1.0683184073486622 7.475758240208105 0.9999999981604344 1.0169725743389837 0.0018757216853578784 0.06560473046882845 2.6312203112895017e-09 2.5067521978294374e-10 0.06288057630843606 0.014821092424910549 0.0854440041914161 1.0683184073486622 0.016972576178549303 SSKAS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 S(0.301)S(0.345)KAS(0.655)LGS(0.699)LEGEAEAEASSPK;S(0.49)S(0.49)KAS(0.51)LGS(0.51)LEGEAEAEASSPK 167.48 6.8543e-12 818660000.0 454456.0 331576.0 258090.0 269583.0 297822.0 562062.0 522989.0 483360.0 908780.0 559571.0 True False 452009.25939080777 342612.30671807536 294426.82864150486 303712.18015903246 335747.8663707063 523207.97689163167 497690.02405800496 519430.7776523464 684823.346028108 523858.69970716495 0.8628457628812488 0.6540166401924686 0.5620348174156282 0.5797597335480091 0.6409130297127605 0.9987578276052358 0.9500463089306559 0.9915474877914717 1.3072672963356755 1.0 18.99881820085236 2.7010154955249916 4.232869297459155 1.0413168603555072 0.6479644967760807 0.7274895056030863 0.11924482840997454 0.11975695191386392 4.895093776922999 0.04033832190512166 0.03903843082231331 502.36051330761364 -2.7010154955249916 -0.3933523635794265 SSKPEGEAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSKPEGEAGR 10 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 0 84.507 0.013565 44374000.0 87617.0 95564.0 81628.0 79356.0 87332.0 78370.0 106740.0 87429.0 117730.0 101540.0 False True 87145.27980716384 98744.78997034213 93120.512876705 89402.46146344593 98453.21254268155 72952.46636313648 101576.57841360227 93953.39593546632 88717.01900117657 95059.63026723241 0.9167433069346085 1.0387668213388792 0.9796010421555802 0.9404882094756417 1.0356995105694087 0.7674389870658229 1.0685564221957244 0.9883627326483784 0.9332775516985976 1.0 16.53654516986351 -4.984827887968825 0.48739125693912105 1.9230129981693038 0.9675536699618462 0.015118079806222484 0.08067173027650963 13585.979125409767 68.33486997624365 13643.65267624916 0.03689414959899849 1.035552477506836e-05 4.984827887968825 -0.9554593282074576 SSLDVLPSQVYSLVGS(ph)SPLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSLDVLPSQVYSLVGSSPLR 20 0 Q5SQL3;J3KP92;Q86Z02;H3BLW0;Q86Z02-4;Q86Z02-3;Q86Z02-2 Q5SQL3 HIPK1 Homeodomain-interacting protein kinase 1 1 SSLDVLPSQVYS(0.001)LVGS(0.5)S(0.5)PLR;SSLDVLPSQVYSLVGS(0.5)S(0.5)PLR;SSLDVLPSQVYS(0.29)LVGS(0.355)S(0.355)PLR 169.51 1.1184e-11 141237000.0 347915.0 374104.0 324673.0 328003.0 300383.0 400896.0 350873.0 312893.0 492835.0 373932.0 True False 346041.8642969902 386555.8254893565 370384.13629169454 369528.1461690948 338634.9945404699 373183.00312767515 333899.93252497574 336242.6644984604 371382.4179006614 350067.33962070843 0.9885008543553941 1.1042327624970174 1.0580368242664369 1.0555916086586992 0.9673424401927204 1.0660320483824972 0.9538162939928936 0.9605085263388844 1.0608885087739046 1.0 18.417272942757904 3.2581654975759524 24.113158244797646 0.9965359719314586 1.0558111696772314 0.22692270494156364 0.044540426597041806 205.44589580168451 252687.10333252558 0.012150395303440567 0.016425612858658702 1812.0304756011376 -3.2581654975759524 0.059275197745772834 SSLFPFEDAFLDDSHGDQALSSGLS(ph)SPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLFPFEDAFLDDSHGDQALSSGLSSPTR 29 0 Q8NE35-2 Q8NE35-2 1 SSLFPFEDAFLDDSHGDQALS(0.264)S(0.062)GLS(0.298)S(0.298)PT(0.077)R 61.911 0.015823 27121000.0 13383.0 18402.0 16084.0 15733.0 16983.0 18738.0 15220.0 11842.0 20030.0 16725.0 True False 13310.947414991084 19014.49944575609 18348.48739536583 17724.796186859177 19145.684383872605 17442.686164507457 14483.750453953786 12725.710172457577 15093.8748882491 15657.596181007108 0.8501271370849031 1.2143945485591814 1.1718585141199909 1.1320253749013922 1.2227729060413883 1.1140079206836162 0.9250302719853503 0.8127499282357307 0.9639969452372383 1.0 13.934575120662709 2.2270795103805745 4.760261821345186 0.8970011667856446 1.1311777730970258 0.4185619433360068 0.1087590680630611 0.151976912113709 8.810447519712115 0.03967516096303097 0.030330787587429346 168.68618268001805 -2.2270795103805745 0.23417660631138126 SSLFPFEDAFLDDSHGDQALSSGLSS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSLFPFEDAFLDDSHGDQALSSGLSSPTR 29 0 Q8NE35-2 Q8NE35-2 1 SSLFPFEDAFLDDSHGDQALSSGLS(0.031)S(0.964)PT(0.005)R;SSLFPFEDAFLDDSHGDQALSSGLS(0.044)S(0.953)PT(0.004)R;SSLFPFEDAFLDDSHGDQALSSGLS(0.02)S(0.859)PT(0.12)R;SSLFPFEDAFLDDSHGDQALSS(0.007)GLS(0.181)S(0.688)PT(0.123)R 323.69 5.511099999999997e-93 909899000.0 243178.5 290024.4 284273.8 285407.0 266221.3 300195.7 270198.9 253181.0 271451.4 264155.8 True False 241869.25397567125 299677.6868305482 324297.08008783567 321539.4969365609 300123.00453772926 279443.8778436668 257128.34694696555 272074.65184706805 204555.8397324046 247297.15068884136 0.978051115032863 1.2118121296416149 1.311366019319319 1.3002151300203781 1.2136128689786458 1.1299923070899984 1.0397545876721166 1.1001932334812974 0.8271661811008267 1.0 17.915886091800086 1.930005837677663 1.1199816782636547 0.944513970692862 1.2118914724561194 0.49105549005713445 0.10405726840388199 0.42578722227805454 0.9830023408073948 0.08438202279716249 0.037416787298729055 85.11494790636232 -1.930005837677663 0.26737750176325736 SSLGQS(ph)AS(ph)ETEEDTVSVSKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSLGQSASETEEDTVSVSKK 20 1 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 SF3B2 Splicing factor 3B subunit 2 2 SSLGQS(1)AS(0.989)ET(0.011)EEDTVSVSKK;SSLGQS(0.999)AS(0.929)ET(0.071)EEDTVSVSKK;SSLGQS(1)AS(0.992)ET(0.008)EEDTVSVSKK 130.15 5.829600000000001e-05 907390000.0 1472880.0 1392430.0 1148910.0 1252160.0 1278860.0 1846050.0 1819900.0 1626070.0 3023980.0 1819940.0 True False 1464950.177732352 1438776.1908082906 1310666.5414952603 1410683.327613144 1441715.2406029156 1718436.9086342745 1731864.4843068654 1747415.6004161548 2278760.648255988 1703789.8710709747 0.8598185742303468 0.8444563588724114 0.7692653676074483 0.8279679035340263 0.8461813660722591 1.0085967394289608 1.016477743947523 1.0256051113379125 1.3374657796407698 1.0 20.700315987835697 2.3581908571791117 1.0586693133665286 1.1303436358204173 0.8173818329618053 0.6737091247948901 0.08916825803373654 0.30224812746094515 0.6655660838538513 0.05731879202832247 0.03609297724433852 228.13444225236267 -2.3581908571791117 -0.31296180285861197 SSLGQSAS(ph)ETEEDTVSVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLGQSASETEEDTVSVSK 19 0 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 SF3B2 Splicing factor 3B subunit 2 1 SSLGQSAS(1)ETEEDTVSVSK 405.6 1.548999999999999e-147 240730000.0 247630.0 204030.0 212280.0 191190.0 194590.0 215170.0 228970.0 230200.0 293090.0 251120.0 True False 246296.7875942796 210821.01521126067 242167.1788291631 215394.63439684766 219369.88307470837 200295.804355698 217893.84634965815 247378.69293191467 220861.89670478908 235093.30660535142 1.0476554656136396 0.8967546471459675 1.0300896368593195 0.9162091320550793 0.9331183700732161 0.8519842918876989 0.9268398556128787 1.052257490882914 0.9394648443800552 1.0 17.842873938716 -1.1485269762672183 4.26785850821592 1.000010116419417 0.9564494664476366 0.0424931960710111 0.0638168172876004 6.167063100351587e-06 1.2302574057939139e-06 0.06203162340604019 0.01461759840594016 0.07103510450702984 1.1485269762672183 -0.04356064997178044 SSLGQSAS(ph)ETEEDTVSVSKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSLGQSASETEEDTVSVSKK 20 1 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 SF3B2 Splicing factor 3B subunit 2 1 SSLGQSAS(0.998)ET(0.002)EEDTVSVSKK;SSLGQSAS(0.93)ET(0.07)EEDTVSVSKK;SSLGQSAS(0.994)ET(0.006)EEDTVSVSKK 279.54 7.000799999999998e-45 1560770000.0 1195220.0 993970.0 927650.0 962040.0 1051540.0 1159150.0 1191690.0 1331100.0 1902410.0 1476160.0 True False 1188785.0683214245 1027053.6905824475 1058255.0567216561 1083834.165359817 1185447.3860341148 1079020.688845599 1134043.4020021148 1430433.4411888432 1433586.5464879642 1381950.2049958415 0.8602227953104878 0.7431915324225 0.7657693112935575 0.7842787398863467 0.8578075980948112 0.7807956357217994 0.8206109003801098 1.0350832005507373 1.0373648350754274 1.0 20.39827420219954 1.7645254730412594 4.472367840819858 1.0283471673134077 0.7971744941832786 0.8870123383422499 0.036370333223707405 0.05698363046857381 2.3961680094974693 0.01857673739786674 0.009686797835400251 58.146753661507304 -1.7645254730412594 -0.23117267313012912 SSLLCLQGNY(ph)AGHDWFVS(ph)S(ph)LFMIMLGDKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLLCLQGNYAGHDWFVSSLFMIMLGDKEK 30 1 Q96NH3;Q96NH3-4 Q96NH3 TBC1D32 Protein broad-minded 3 S(0.077)S(0.081)LLCLQGNY(0.843)AGHDWFVS(1)S(1)LFMIMLGDKEK 46.898 0.052226 359610000.0 444430.0 237000.0 184330.0 156090.0 180380.0 343050.0 331190.0 306650.0 740220.0 300340.0 True False 442037.23826081457 244888.40173047475 210282.06177491805 175850.97799573187 203350.3238039767 319335.7609528383 315169.07443133707 329533.78013714857 557802.6994398276 281172.0440659893 1.5721237142518734 0.8709557258580123 0.7478768469797309 0.6254212739388157 0.7232238342879197 1.1357308370169694 1.120911844128319 1.1720005138910932 1.9838483633490773 1.0 18.1010936339528 1.806801567152785 1.6307830010942415 1.4630301269618833 0.9074156608978832 0.2574967408294103 0.34081784590817926 0.4592210461423077 2.3408081019252482 0.24514772190231293 0.10240344832040083 64.0916669390098 -1.806801567152785 -0.5556144660640001 SSLLDDLLTESEDMAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSLLDDLLTESEDMAQR 17 0 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 ;;; 121.28 0.00014137 68631000.0 60982.0 70949.0 62975.0 67611.0 65028.0 75336.0 70119.0 62545.6 70949.0 66431.0 False True 60653.67968773712 73310.49457542373 71841.33261148736 76170.54566768806 73308.93034884703 70128.19964186854 66727.07608940767 67213.07027212146 53464.56961789234 62191.316705559446 0.9752756960412631 1.1787898770901937 1.1551666119502706 1.2247778259513675 1.178764725241679 1.1276204357255488 1.0729323581509371 1.080746860375013 0.8596790106730929 1.0 15.924425541571956 1.47990937051334 2.450921576236034 0.9326484339503074 1.1400836340319116 0.5189125718313901 0.07407695840693193 0.20253720431606748 2.3805380839059063 0.05827446548299464 0.019492182463037973 30.193215762722858 -1.47990937051334 0.2074352000816042 SSLS(ph)GDEEDELFK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 SSLS(1)GDEEDELFK 191.06 4.0761e-06 219540000.0 482710.0 374210.0 280440.0 288480.0 320680.0 487430.0 422880.0 378290.0 677520.0 431250.0 True False 480111.14299412235 386665.35363527766 319923.5143718227 325001.5384214792 361516.6971807254 453735.11138680024 402423.67884152243 406519.9207176977 510554.2743028715 403727.2557883001 1.1891967562523822 0.957739038154092 0.7924248605587801 0.8050027184488584 0.8954478351352418 1.1238654435179438 0.9967711445583916 1.0069172068255454 1.2646019484267557 1.0 18.623021461461505 2.7477543560335547 24.33609284917362 1.0660509431731382 0.9152555602949273 0.25602204808549456 0.1264548472803472 687.6744431439007 1820293.605341253 0.040393880917729476 0.042272247480355164 559.441083086234 -2.7477543560335547 -0.15079538287821093 SSLS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSLSPGR 7 0 Q9BUQ8;F8VVA2;F8W1J5 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 SS(0.001)LS(0.999)PGR;SSLS(1)PGR 137.13 0.0030554 2913600000.0 1856530.0 2133100.0 2035090.0 2022480.0 1809180.0 1839640.0 2157500.0 1911950.0 2309100.0 1913290.0 True False 1846534.6487598757 2204098.9440138177 2321612.9826806197 2278525.760630451 2039568.3491500118 1712470.0168467578 2053133.4825496252 2054629.4176853783 1740053.2453547672 1791182.1941500183 1.030902749474977 1.2305274981028624 1.2961344693258914 1.2720792826503589 1.1386716302848587 0.9560557392986969 1.1462449153721699 1.1470800817447693 0.9714551936914974 1.0 20.772480661102563 3.0015655830352914 15.29085014235137 1.0672144333120839 1.2141517210182422 0.4075439673059307 0.09088087401672278 0.45467453916895356 4366.754246124973 0.027367883839392818 0.03207913106891076 1003.6113935829853 -3.0015655830352914 0.14693728770615833 SSLSSLS(ph)PPSSPLDTPFLPASR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSLSSLSPPSSPLDTPFLPASR 22 0 Q9ULE0;Q9ULE0-2 Q9ULE0 WWC3 Protein WWC3 1 SSLSS(0.002)LS(0.997)PPSSPLDTPFLPASR;SSLSSLS(1)PPSSPLDTPFLPASR;SSLSSLS(0.998)PPS(0.001)SPLDTPFLPASR 265.42 1.5240999999999993e-37 183224000.0 396104.0 387690.0 373355.0 350135.0 374938.0 422811.0 421125.0 435983.0 567270.0 453487.0 True False 393971.4200752915 400594.0272864458 425920.13874016446 394462.0550998494 422684.13186836377 393583.07076003635 400753.5748962735 468518.26533681556 427473.9095285605 424545.0714102457 0.9279849104515682 0.9435842134635085 1.0032389195459297 0.9291405828585712 0.9956166266735819 0.9270701681982542 0.9439600218772012 1.1035772097895296 1.0068987683889152 1.0 18.69555819864694 1.7584799776717417 24.99999999999995 1.0458773766293803 0.954247491311264 0.5210955064535361 0.03652824777979483 5.96929930849493 7498.659857691811 0.01585015655954166 0.008789939397030423 57.34294290538757 -1.7584799776717417 -0.09162988531811633 SSPCIHYFTGTPDPSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPCIHYFTGTPDPSR 16 0 Q12765;Q12765-2;Q12765-3 Q12765 SCRN1 Secernin-1 0 ;;; 150.59 4.0308e-07 4845840000.0 2488780.0 3081840.0 3082950.0 3263690.0 3160470.0 3236440.0 3168190.0 3021610.0 3530150.0 3173180.0 False True 2475380.685009452 3184417.18138838 3517002.5625182185 3676872.81936633 3562937.120926681 3012712.5205602776 3014932.546038889 3247097.881624687 2660191.8340864964 2970664.9357039197 0.8332749531117664 1.0719543436607097 1.1839108881812819 1.2377272088732112 1.1993736076069508 1.0141542670635773 1.0149015830775543 1.09305423260576 0.8954870009451757 1.0 21.502354460644035 2.6947123237569137 23.488112160769607 1.0170987692582525 1.1151286602539516 0.1593698615413408 0.11359078740082047 474.96840880723175 254424.06203341077 0.03878632460257102 0.036568397133142874 495.12211375047053 -2.6947123237569137 0.09802989099569914 SSPDLTGVVTIYEDLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPDLTGVVTIYEDLRR 17 1 O60784;O60784-4;O60784-2;V9GYF4;B0QY02;V9GZ68;Q6UW50;B0QY01 O60784 TOM1 Target of Myb protein 1 0 196.52 2.5535999999999998e-11 42999000.0 34372.0 32474.0 27178.0 36762.0 34746.0 33218.0 30988.0 28091.0 35094.0 37264.0 False True 34186.944971088196 33554.87745905247 31004.426164589175 41416.06543070724 39170.69714432296 30921.717846761087 29488.992054344286 30187.293063207722 26445.55393550743 34885.77961668453 0.9799679223662209 0.9618497229456916 0.8887411003926926 1.1871904794955341 1.1228270537370797 0.8863702685312045 0.8453012195330396 0.8653180004832198 0.7580611419920664 1.0 15.09035145445739 2.5862495517061745 6.459329863822764 0.8576879575037772 1.025091081821674 0.40358920058125836 0.09535029986373562 0.24964427560475197 12.864928395524487 0.03230965130132286 0.03034686720179197 385.69992259271334 -2.5862495517061745 0.16740312431789683 SSPGAVAGLSNAPGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;Q9BWG4-2;Q9BWG4;U3KPY3 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 SSPGAVAGLSNAPGT(1)PR 101.92 0.010874 98876000.0 38905.0 39746.0 37843.0 38773.0 46749.0 43762.0 48540.0 44364.0 44965.0 37911.0 True False 38695.539802751875 41068.92158303565 43170.965462747394 43681.657824514725 52702.20804696815 40736.835944667306 46191.93475919299 47674.666955827386 33883.978250130815 35491.48752275993 1.0902766410660374 1.1571485009384017 1.2163752064509208 1.2307643571293712 1.484925308164989 1.1477917322722426 1.301493343426958 1.3432704652137963 0.9547071879813925 1.0 15.115185421593722 1.2299757202173796 24.97056187420784 0.9773533788665323 1.2537589858030138 0.5033071204074884 0.10675670442477604 164.34719719770516 478012.17865785764 0.09870721992462488 0.026225713260349545 16.981487126550768 -1.2299757202173796 0.27640560693648153 SSPNVANQPPS(ph)PGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 SSPNVANQPPSPGGK 15 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK 261.06 7.376399999999998e-25 2826870000.0 2917330.0 3004620.0 2890570.0 2610840.0 2637450.0 4028590.0 3859110.0 3127950.0 4099140.0 3412880.0 True False 2901623.419425835 3104626.960368855 3297537.1307151583 2941372.0763045438 2973313.624109098 3750103.0555808083 3672430.1060681776 3361373.5124082672 3088961.8726618784 3195067.0764864245 0.9081572780677625 0.9716938286575738 1.0320713311413225 0.9205979110582974 0.9305950557316043 1.1737165342095885 1.1494062622643602 1.0520509998509102 0.9667909307427659 1.0 21.607414788414605 2.762443930022512 24.789036671157685 1.0766739592161 0.9563171737033135 0.43208896398584873 0.06595356536940579 686.0861058410803 712103.2481401538 0.020998525154172654 0.022261340732215994 578.6872715883026 -2.762443930022512 -0.12035678551278661 SSPPAPPLPPGS(ph)GSPGTPQALPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPPAPPLPPGSGSPGTPQALPR 23 0 Q9Y3L3;A0A2R8Y5V0 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 S(0.004)S(0.004)PPAPPLPPGS(0.838)GS(0.154)PGTPQALPR 124.08 6.2129e-05 167190000.0 14615.0 16388.0 13958.0 15807.0 15540.0 16477.0 19682.0 15412.0 18262.0 15434.0 True False 14536.31446387915 16933.46467324479 15923.165074889093 17808.164579271783 17518.926887203685 15337.983772685951 18729.906467458502 16562.12170055026 13761.574798262856 14448.988906287816 1.0060437140728464 1.1719480707661003 1.102026250982846 1.232485172130082 1.2124673221653532 1.0615264412038734 1.2962780017989872 1.146247796850537 0.9524247604809347 1.0 13.818680920654586 1.2581877955481038 9.588308641345995 0.9761161229050261 1.1604677263004428 0.4353668022472066 0.08052478827457885 0.19435499701940645 90.85337173677824 0.05411957411533021 0.018858886545740288 18.121235130308776 -1.2581877955481038 0.18435160339541667 SSPPAPPLPPGSGS(ph)PGTPQALPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPPAPPLPPGSGSPGTPQALPR 23 0 Q9Y3L3;A0A2R8Y5V0 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 SS(0.001)PPAPPLPPGS(0.141)GS(0.858)PGTPQALPR 157.22 9.5085e-09 128110000.0 70164.0 74508.0 65821.0 68619.0 70312.0 73263.0 75722.0 66183.0 72733.0 90849.0 True False 69786.24481995328 76987.95373896284 75088.02467361197 77306.1583643355 79265.81642812524 68198.50125255156 72059.03757386922 71121.9115304644 54808.92672226765 85050.93904025796 0.8205229196460806 0.9051981625096627 0.882859443069404 0.9089395042157435 0.9319804968949914 0.801854771059853 0.8472456434579851 0.836227234326003 0.6444247099532249 1.0 16.376039544200538 2.7269711340886973 24.75923785942993 0.8194829769795232 0.891416594572499 0.12223155908535466 0.08475567043219553 1242.4861420378834 2654385.359183871 0.025836416500607196 0.024547290668889447 533.2994479127373 -2.7269711340886973 0.07193361759297578 SSPS(ph)PALEQPFR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSPSPALEQPFR 12 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 SS(0.002)PS(0.998)PALEQPFR;SSPS(1)PALEQPFR;SS(0.003)PS(0.997)PALEQPFR;SSPS(1)PALEQPFR;SSPS(1)PALEQPFR 277.82 6.8705e-28 1865210000.0 1172950.0 1210310.0 1105460.0 1168720.0 1123060.0 1315250.0 1309080.0 1207910.0 1598020.0 1332070.0 True False 1166634.9675269974 1250594.436702155 1261099.1591694301 1316679.8321684403 1266075.0341018643 1224329.8632654722 1245754.7992287658 1298050.3778426982 1204209.3833709352 1247056.1521574967 0.935511176067441 1.00283730972221 1.0112609259716479 1.0558304290392135 1.0152510229082015 0.9817760500578051 0.9989564600387244 1.0408916836639457 0.9656416684104934 1.0 20.2500949972947 4.7435554675151455 3.355854168473501 1.0119329844218259 0.924950808450696 0.4325992905488879 0.024780759231598226 0.2941337314158756 5.4606825610529075 0.006044567742244836 0.06631928430176769 55405.83030113835 -4.7435554675151455 -0.0869821759711299 SSPS(ph)PEVVKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPSPEVVKPK 11 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 S(0.001)S(0.004)PS(0.996)PEVVKPK;S(0.045)S(0.025)PS(0.93)PEVVKPK 140.82 2.3265e-05 923490000.0 2316150.0 1888090.0 1708270.0 1576760.0 1685040.0 2504120.0 2375100.0 2182490.0 3762400.0 2524550.0 True False 2303680.1057484583 1950933.9342754912 1948779.5674509804 1776377.6543311568 1899619.855985437 2331016.078464426 2260207.3392369007 2345358.4862596635 2835206.9335770514 2363431.0576240076 0.9747185551773117 0.8254668262829693 0.8245552842189176 0.7516096772109678 0.8037551380471208 0.9862847790482331 0.9563246331835551 0.9923532479163946 1.1996148245709046 1.0 21.17245135055358 2.1561816260487516 1.1915531895849008 1.0733583404036857 0.8337683554037444 0.5926129558881525 0.08000690428341253 0.3367346861213651 0.9053501739288977 0.05596357513311462 0.029518796342441332 143.27869790235937 -2.1561816260487516 -0.23958998499994133 SSPS(ph)TENMHFPSSISSQTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.102)S(0.386)PS(0.478)T(0.034)ENMHFPSSISSQTR 114.57 9.9767e-05 509120000.0 116270.0 139890.0 149110.0 155330.0 141910.0 173780.0 161290.0 147820.0 156420.0 143630.0 True False 115644.01523881152 144546.15408470912 170103.39191264592 174994.76207365617 159981.3973335312 161766.99763411834 153487.7865123656 158851.07901475072 117872.38692061517 134463.41043217058 0.8600407714420392 1.0749850358557187 1.2650533804395343 1.3014303408727792 1.1897764367224126 1.2030558879489444 1.1414836647311706 1.1813702962329844 0.8766130989967366 1.0 17.036854121050958 -0.3864158446030448 6.087893491757072 1.000009263473495 1.1383716407538234 0.05065415435784271 0.14188902188067495 9221307.891453488 1514696.0189998727 0.13713978357196147 0.03326128308068457 0.4107562264360155 0.3864158446030448 0.1383623772803284 SSPSGASS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSPSGASSPR 10 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 SSPS(0.001)GAS(0.187)S(0.812)PR;SSPS(0.006)GAS(0.156)S(0.838)PR 85.821 0.014663 295640000.0 328610.0 364450.0 318520.0 329170.0 320720.0 279210.0 364450.0 320330.0 390390.0 367300.0 True False 326840.8002720029 376580.49793532246 363364.84737452905 370842.8882494396 361561.790943627 259908.86988964264 346820.16116579867 344234.6512027812 294183.61545799096 343858.5995386494 0.9505093102528799 1.0951609133538485 1.056727526553214 1.0784749567031178 1.0514839280702295 0.7558597348978883 1.0086127310211894 1.0010936229736187 0.8555365951373423 1.0 18.391455900752906 2.905871634983265 24.715066237889623 0.9343148202818307 1.0515847470260922 0.36026011774308364 0.08075346251356978 56.87377928224766 14928.912871726932 0.024410751112187597 0.025891520070750032 805.1404295630605 -2.905871634983265 0.11726992674426151 SSPSGNTQSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSGNTQSSPK 12 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 SSPS(0.002)GNT(0.004)QS(0.057)S(0.937)PK 64.22399999999999 0.06829199999999999 39184000.0 157290.0 112950.0 99772.0 105380.0 102620.0 101450.0 139010.0 132000.0 190510.0 147290.0 True False 156443.16811656184 116709.47247028317 113819.03036622984 118721.09719514503 115688.0487236063 94437.00028761239 132285.55523023088 141850.51028241837 143561.36320321183 137889.82609868667 1.1345519284693033 0.8463965455055047 0.8254345776371526 0.8609851832736178 0.8389890102610563 0.6848728652397065 0.9593568936373532 1.0287235417999372 1.0411309323174147 1.0 17.073156489095492 2.0094158812515017 24.992451163242453 1.0183673283678747 0.8579052152498271 0.31933527839905274 0.1043985107454521 227.7952038643556 604631.2636679877 0.03929534705817677 0.028986446963284795 102.19176056196862 -2.0094158812515017 -0.1604621131180476 SSPSTGS(ph)LDSGNESK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSPSTGSLDSGNESK 15 0 Q15057;A0A0U1RQT1;A0A087X1H5 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 1 SSPS(0.001)T(0.009)GS(0.991)LDSGNESK 191.93 1.6275e-07 293140000.0 586930.0 520730.0 486760.0 439810.0 477840.0 652660.0 639620.0 534580.0 877240.0 658760.0 True False 583770.0340940533 538062.1832620676 555291.577006234 495489.90090526524 538690.0916204248 607543.1503963835 608679.1370143187 574473.074142237 661055.9564137614 616717.3728071896 0.9465762759963032 0.8724615309812057 0.9003987912301609 0.8034310735400267 0.8734796770332603 0.9851241057649363 0.986966094766745 0.931501364275399 1.0718944942393147 1.0 19.23424996176094 2.737705348508758 23.76646154260686 0.9853144924537179 0.8758518520230655 0.6057864015815759 0.04634303069174134 28.516328546075034 792413.1961275013 0.014681172696335893 0.014601980116540248 546.6449602414147 -2.737705348508758 -0.10946264043065246 SSPVNNHHS(ph)PGQTPTLGQPEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSPVNNHHSPGQTPTLGQPEAR 22 0 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 Q5SW79 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 SSPVNNHHS(1)PGQTPTLGQPEAR;SSPVNNHHS(0.999)PGQT(0.001)PTLGQPEAR;SSPVNNHHS(1)PGQTPTLGQPEAR;S(0.239)S(0.239)PVNNHHS(0.521)PGQTPTLGQPEAR 171.63 3.2422e-18 1203260000.0 558106.0 520811.0 425384.0 529040.0 554807.0 591254.0 608148.0 436014.0 777342.0 562798.0 True False 555101.2193074053 538145.8792981019 485274.36969598994 596016.4097563067 625458.3828512751 550382.002642208 578729.5578890339 468551.57871423004 585776.4799491419 526879.7498043908 1.0535633975560685 1.021382733912043 0.9210343913884577 1.1312190494654302 1.1870989216865566 1.0446064834462563 1.0984091874927682 0.8892950979577111 1.1117840079574457 1.0 19.007114206400622 -3.1798146804701566 8.313334689447558 1.0006584710785693 1.0408210069041754 0.0 0.08800625788317266 0.0 0.0 0.0 0.02024222310250229 0.000660975435302569 3.1798146804701566 0.04016253582560614 SSQCHTGS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSQCHTGSSPR 11 0 O15226;O15226-2 O15226 NKRF NF-kappa-B-repressing factor 1 SSQCHT(0.002)GS(0.642)S(0.356)PR;SSQCHTGS(0.5)S(0.5)PR;S(0.001)S(0.001)QCHT(0.013)GS(0.493)S(0.493)PR 106.32 0.0015117000000000002 123156000.0 153830.0 193530.0 183876.0 183272.0 195722.0 122961.9 179934.0 161340.0 217551.0 201181.0 True False 153001.79637211963 199971.5290586445 209764.1425211568 206474.21640869844 220646.03656481855 114461.83327417816 171229.90500536942 173380.01006791976 163938.47108404766 188341.45634028054 0.8123638807150775 1.0617499351674953 1.1137438702935982 1.0962759894755039 1.1715213466660928 0.6077357343323156 0.9091461239208254 0.9205621185952305 0.870432215347515 1.0 17.522991064796333 2.772672741166628 24.999876121579682 0.8660416586548368 1.0577074802119735 0.34854126166298305 0.12934746272515885 710.957788033979 521040.94998093 0.03928217615813174 0.04166310944018908 592.4786991499188 -2.772672741166628 0.19166582155713663 SSQDPSVPQNPPT(ph)PLGHSNPLDHQIPLDPPAPEVVPTPSDWTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSQDPSVPQNPPTPLGHSNPLDHQIPLDPPAPEVVPTPSDWTK 43 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 S(0.004)S(0.004)QDPS(0.011)VPQNPPT(0.491)PLGHS(0.491)NPLDHQIPLDPPAPEVVPTPSDWTK 93.975 0.00018703 142560000.0 38868.0 43060.0 43252.0 36693.0 40916.0 54130.0 48190.0 31904.0 55101.0 48111.0 True False 38658.739006640746 44493.22606968035 49341.50564687661 41338.330037781925 46126.41007186784 50388.12050831404 45858.86559632283 34284.83848522938 41522.09686557228 45040.51479010059 0.8583103276416706 0.9878489683572504 1.0954916007692108 0.9178032318331236 1.0241092999675465 1.1187287876955792 1.0181692152062636 0.7611999695164411 0.921883265745852 1.0 15.458935696329958 1.7697512764154537 24.99999999998921 0.8700173496181455 1.0078987659464707 0.21621408334375714 0.09091026002767658 31.033474587413558 24886.95066197402 0.04140672366235447 0.022967438406624963 58.85065168938927 -1.7697512764154537 0.13788141632832518 SSQEEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSQEEVR 7 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ;; 100.19 0.023212 482720000.0 585480.0 689130.0 606260.0 669300.0 643600.0 453120.0 641730.0 572640.0 700980.0 655740.0 False True 582327.8407329434 712067.2754621175 691616.1382936137 754033.3113751244 725558.6450839313 421796.88092974783 610687.0682533361 615373.3046070003 528232.8716507665 613890.1117927409 0.9485864482038547 1.1599262828695356 1.126612279637295 1.228287110168828 1.1819031307819656 0.6870885730639578 0.994782382908806 1.0024160558799817 0.8604681220685736 1.0 19.22762090631898 2.7899383752488585 24.999997003929288 0.9240260771174714 1.1361540419074578 0.4922173282290889 0.11114037680852082 309.66223308679616 150678.46605283758 0.03389609955325294 0.03595221617607102 616.5075155603581 -2.7899383752488585 0.2121279647899864 SSQHGGS(ph)STSLASTK ddPTM_BT-474_Trastuzumab_2h_R1 6 SSQHGGSSTSLASTK 15 0 O15075-2;O15075;O15075-3;O15075-4 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 SSQHGGS(0.916)S(0.04)T(0.04)S(0.005)LASTK;SSQHGGS(0.949)S(0.025)T(0.025)SLASTK;S(0.008)S(0.011)QHGGS(0.494)S(0.455)T(0.032)SLASTK;SSQHGGS(0.893)S(0.107)TSLASTK;SSQHGGS(0.993)S(0.003)T(0.003)SLASTK;SSQHGGS(0.884)S(0.026)T(0.026)S(0.063)LASTK 276.3 1.6217999999999994e-33 3341885000.0 1520156.0 2076210.0 2326370.0 2246690.0 2275300.0 2571630.0 2618980.0 2509820.0 2631840.0 2528500.0 True False 1511971.649001208 2145315.3947545504 2653902.6748294714 2531120.7236416824 2565045.9682403184 2393859.2710658703 2492289.9319248316 2697115.5130077237 1983258.2968491989 2367128.9652422415 0.6387364909991203 0.9062942603699703 1.121148325164397 1.069278759546867 1.0836105704016101 1.011292289611645 1.0528745871139225 1.1394037049146213 0.8378328033539317 1.0 21.174706878035895 4.62901573623482 2.7770724504751967 1.0508377119121002 0.6082359728197232 0.6918405022878216 0.08091589190352101 0.17183944987375233 2.0459741112893837 0.01911623693919058 0.15179241545481464 42561.38345544238 -4.62901573623482 -0.442601739092377 SSQHGGSS(ph)TSLASTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSQHGGSSTSLASTK 15 0 O15075-2;O15075;O15075-3;O15075-4 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 S(0.001)S(0.001)QHGGS(0.268)S(0.727)T(0.002)SLASTK 182.76 3.4351e-07 630730000.0 260320.0 349710.0 388400.0 381030.0 401120.0 464330.0 453850.0 451630.0 493420.0 492400.0 True False 258918.4660442708 361349.88594584074 443083.3439666804 429268.3589321137 452200.25437549205 432231.9600152501 431895.54162463365 485332.9239306715 371823.2524892592 460974.61043515103 0.5616761968730921 0.783882404292795 0.9611881737877459 0.9312190936652514 0.9809656413584771 0.9376480834969014 0.9369182854060719 1.052840900440323 0.8066024550425137 1.0 18.814327766505706 4.607539493903677 1.9221899084749035 0.9590057509346959 0.49647619506695745 0.7995412786890518 0.060709865267416084 0.2279895619551322 1.097604571002636 0.01498102603960878 0.1706850391920802 40507.87805456661 -4.607539493903677 -0.4625295558677384 SSQPPADRDPAPFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSQPPADRDPAPFR 14 1 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 ; 99.481 0.0019736000000000003 599920000.0 254140.0 315190.0 283870.0 281840.0 300320.0 271540.0 294020.0 289490.0 349500.0 292620.0 False True 252771.73847760816 325680.90861362155 323836.4285577282 317520.91510229354 338563.9718639005 252769.07893640484 279797.1293345263 311093.2138004345 263370.4080600627 273944.7410754139 0.9227106805748936 1.1888562172615873 1.1821231803408838 1.1590692117534886 1.235884180637356 0.9227009722622139 1.0213633896972723 1.1356057158797366 0.9613997590395786 1.0 18.06352538289091 2.7424741141691658 24.997287439483166 1.0274593837141959 1.1442210530328842 0.3095308588494967 0.0943097722285032 479.0686361104302 3060032.5745219304 0.02964894019201424 0.030372658959193367 552.6804648148543 -2.7424741141691658 0.11676166931868837 SSQQPST(ph)PQQAPPGQPQQGTFVAHK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSQQPSTPQQAPPGQPQQGTFVAHK 25 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 SSQQPS(0.006)T(0.994)PQQAPPGQPQQGTFVAHK;SSQQPS(0.012)T(0.988)PQQAPPGQPQQGTFVAHK;SSQQPS(0.03)T(0.97)PQQAPPGQPQQGTFVAHK;SSQQPS(0.192)T(0.807)PQQAPPGQPQQGTFVAHK 222.36 3.8348e-33 3455530000.0 1920190.0 1607290.0 1639440.0 1567350.0 1670600.0 2183940.0 2042130.0 1958740.0 2619990.0 2341890.0 True False 1909851.9103931666 1660787.676022678 1870258.9017320678 1765776.3492959838 1883341.007578025 2032969.36824178 1943344.3702058233 2104911.1250801855 1974328.5705673345 2192428.5752071007 0.8711124877638299 0.7575105044714157 0.8530535146648505 0.8053974342718031 0.8590204620007388 0.92726823178253 0.8863889077993118 0.9600819606546825 0.9005212725713703 1.0 21.064098412736268 2.3666859453679394 0.502283688092662 0.9815626820681902 0.8018943022439078 0.6671334311771633 0.03882394781049613 0.5239690940968683 0.2769711480191814 0.03420979284150829 0.03324320139676289 232.64083361053767 -2.3666859453679394 -0.1796683798242824 SSQRHS(ph)PPFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSQRHSPPFSK 11 1 Q8WV28-3;Q8WV28;Q8WV28-2 Q8WV28-3 BLNK B-cell linker protein 1 S(0.239)S(0.239)QRHS(0.522)PPFSK 115.82 0.00064766 381230000.0 337680.0 468030.0 491740.0 495050.0 465310.0 569510.0 566410.0 519340.0 652870.0 615570.0 True False 335861.96839977463 483608.09561989084 560972.7177192988 557723.2792413805 524564.4703915544 530141.1141823384 539010.584403677 558095.7879550852 491978.93650979485 576283.7955840083 0.5828065459647547 0.8391839217512622 0.9734313579836247 0.967792749883209 0.910253722924759 0.919930628354891 0.9353214310970543 0.9684391479193141 0.8537094748798574 1.0 19.136419927860402 4.687359309657828 2.595166639203326 0.9399884492506501 0.5303874868698941 0.8819022832365553 0.03957742743206413 0.12150936664019132 1.1455764300877427 0.00936969172484052 0.10287077318105425 48680.97968626656 -4.687359309657828 -0.40960096238075594 SSQSEGIFLGS(ph)ES(ph)DEDSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSQSEGIFLGSESDEDSVR 19 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 2 SSQSEGIFLGS(1)ES(1)DEDSVR 111.83 0.00014773 0.0 91477.0 105690.0 81264.0 96460.0 113370.0 106330.0 101050.0 98861.0 112150.0 108630.0 True False 90984.49799605011 109207.82775904589 92705.26484064964 108671.82610973345 127806.99750336434 98979.65737389692 96161.8254515131 106238.50982598627 84512.13523300726 101697.14039717808 0.8946613212594793 1.0738534764353729 0.9115818250010701 1.0685829088735017 1.256741310564036 0.9732786682824311 0.9455705939808453 1.0446558222883344 0.8310178133125985 1.0 16.63391958733122 -0.3701611044457618 5.653615324838202 0.9999999570177877 1.0087184683727846 0.0 0.11397318135594377 0.0 0.0 0.10766025007452973 0.025375764338964293 0.42642130561998065 0.3701611044457618 0.008718511354996905 SSS(ph)APLIHGLSDLSQVFQPYTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSAPLIHGLSDLSQVFQPYTLR 23 0 G1UD79;Q7Z309-4;Q7Z309;Q7Z309-2;Q7Z309-3 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 S(0.111)S(0.111)S(0.779)APLIHGLSDLSQVFQPYTLR;S(0.02)S(0.02)S(0.959)APLIHGLSDLSQVFQPYTLR 266.17 2.7031e-44 3501700000.0 763900.0 877400.0 877660.0 889310.0 823180.0 956680.0 867980.0 734750.0 1059350.0 942890.0 True False 759787.2472772684 906603.7286004998 1001226.8992425243 1001896.5548169914 928007.0936298794 890546.9633824857 825992.4913944025 789580.775984902 798287.3870627399 882713.9529512585 0.8607400446509337 1.0270640059210216 1.1342597405365924 1.1350183731289833 1.0513112322821998 1.0088737811439803 0.9357419678626197 0.8944922342566629 0.9043556912108985 1.0 19.751586476844462 2.334500412763308 2.733057627618036 0.9196533076318767 1.050287133939924 0.3023369468046174 0.07621971341908972 0.30428025839370265 4.640941109869572 0.031914036707359976 0.024685176523615224 216.0232087907252 -2.334500412763308 0.13063382630804732 SSS(ph)APNVHINTIEPVNIDDLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSAPNVHINTIEPVNIDDLIR 22 0 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YDP5;A0A2R8Y492;A0A2R8Y679 P15056 BRAF Serine/threonine-protein kinase B-raf 1 S(0.104)S(0.104)S(0.792)APNVHINTIEPVNIDDLIR;S(0.001)S(0.004)S(0.995)APNVHINTIEPVNIDDLIR;S(0.027)S(0.143)S(0.831)APNVHINTIEPVNIDDLIR 351.2 3.111399999999999e-96 2922290000.0 523511.0 493900.0 490009.0 515395.0 500647.0 578746.0 555786.0 528263.0 659606.0 572271.0 True False 520692.4749435394 510339.1629311449 558998.0079654197 580643.9541553602 564401.4278827454 538738.6512415435 528900.5078712989 567684.6675251607 497054.93956756964 535748.1748341469 0.9718978046070464 0.9525728446748924 1.0433969432345156 1.0838001535611612 1.0534826890590319 1.0055818695198027 0.9872184968899469 1.0596110153821812 0.927777196294592 1.0 19.03119550443017 4.243313688985619 24.998615478626224 1.0251775042273896 0.962235303772198 0.22365863415446252 0.04229390696908305 153.69399652972803 808321.2906140165 0.010305801561739429 0.026369596741662147 17511.110517242152 -4.243313688985619 -0.06294220045519161 SSS(ph)ASSPEMK ddPTM_BT-474_Trastuzumab_2h_R1 7 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SSS(1)ASSPEMK;SS(0.001)S(0.999)ASSPEMK;SS(0.002)S(0.997)ASSPEMK;SS(0.002)S(0.998)ASSPEMK;SS(0.015)S(0.984)ASSPEMK;SSS(0.998)AS(0.001)SPEMK;SSS(1)ASSPEMK 205.07 1.84e-07 3721930000.0 6273030.0 5697720.0 5125110.0 5144390.0 5225280.0 5873950.0 6309550.0 6161920.0 8499930.0 6422110.0 True False 6239256.703479158 5887365.1658555325 5846680.939745303 5795669.24653381 5890688.435338972 5467897.662290994 6004332.961678326 6621753.759995753 6405236.144726657 6012245.441555015 1.0377581494519672 0.979229012369265 0.9724621186178837 0.9639774860945814 0.9797817625049248 0.9094601535224035 0.9986839393112596 1.1013778170511772 1.0653650465523907 1.0 22.51947247579841 1.9298701564853042 6.470059811039773 1.0637534068081116 0.9722246327841111 0.48606753528507685 0.03729523422070341 0.1759105909392987 13.175383216249093 0.015879498368535284 0.009796195355052686 85.08836066127367 -1.9298701564853042 -0.0915287740240005 SSS(ph)DALSASFNGEMLGNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSDALSASFNGEMLGNR 18 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 S(0.006)S(0.247)S(0.747)DALSASFNGEMLGNR 356.41 1.3171e-90 329760000.0 150620.0 175790.0 168530.0 154540.0 161800.0 162010.0 171420.0 148980.0 193090.0 150680.0 True False 149809.07865545506 181641.0638827009 192257.55911097993 174104.74815465676 182404.27093626492 150810.63003051825 163127.75971200783 160097.64410511145 145505.55677344083 141063.47339636178 1.0619976599790633 1.2876548372825312 1.362915250007863 1.234229839679725 1.2930652176963153 1.0690976650402533 1.156413887907393 1.1349333760928122 1.0314899617181383 1.0 17.10598494308128 2.736528319152156 24.981067014389925 1.0970977155279535 1.2557993544676487 0.4945947160798161 0.08447956574418268 163.26918679384676 2006903.6790248062 0.026683655418452582 0.02633937405742787 545.1654432734124 -2.736528319152156 0.15870163893969513 SSS(ph)DPPAVHPPLPPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 1 S(0.122)S(0.122)S(0.757)DPPAVHPPLPPLR;S(0.112)S(0.112)S(0.776)DPPAVHPPLPPLR;S(0.163)S(0.163)S(0.675)DPPAVHPPLPPLR;S(0.001)S(0.002)S(0.997)DPPAVHPPLPPLR 184.22 1.1962e-09 3250040000.0 1537350.0 1803230.0 1646070.0 1706100.0 1660590.0 1851800.0 1869460.0 1702250.0 2085230.0 1878150.0 True False 1529073.0784156427 1863249.4204744445 1877822.348103074 1922092.085069627 1872056.2934119413 1723789.4246683149 1779027.07776928 1829280.538850355 1571353.007150457 1758284.8590348868 0.8696389953872109 1.059697130928587 1.0679852803451886 1.093163076047105 1.0647059171285267 0.9803812026308943 1.0117968477222619 1.040377803090699 0.893685115398744 1.0 20.74573738919404 1.2578814385741688 24.974469869661675 0.946842530192308 1.028357303529566 0.18102181510385174 0.06452670527680299 316.808146706786 409514.7487112872 0.04229845094983104 0.015398165047003271 18.108456683019238 -1.2578814385741688 0.08151477333725787 SSS(ph)DSWEPTSAGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSDSWEPTSAGSK 14 0 A0A3B3IRS8;B1AL16;Q8IX21;Q8IX21-2 A0A3B3IRS8 FAM178A Protein FAM178A 1 S(0.002)S(0.041)S(0.957)DSWEPTSAGSK 190.1 6.7413e-07 161000000.0 298180.0 323810.0 257280.0 278340.0 283780.0 331300.0 327050.0 308880.0 402380.0 347820.0 True False 296574.63201091276 334587.8201027216 293502.7876821511 313577.8154611571 319917.70090416097 308398.01079631323 311229.3420476734 331930.1940608589 303218.84061576007 325621.8298163166 0.9107946852894064 1.027534979124289 0.9013609064469544 0.963012263760223 0.9824823510285741 0.9471048392863607 0.9557999911223336 1.0193732841809189 0.9311993633436859 1.0 18.312837896129555 1.8706493803688697 18.476566692419002 0.9861698690760042 0.9571366572190991 0.0954074467523921 0.03912749950548764 5.407947640291269 765.1847148375898 0.015022113113754355 0.00968547009444253 74.24195171937819 -1.8706493803688697 -0.029033211856905106 SSS(ph)EDAESLAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 S(0.25)S(0.033)S(0.716)EDAESLAPR 327.18 4.8891e-58 1415000000.0 473120.0 499570.0 409410.0 447070.0 459320.0 510290.0 496150.0 466620.0 520040.0 513200.0 True False 470572.7744885741 516197.88545355736 467051.36934448726 503669.01616088016 517811.67939706484 475014.8533934521 472149.3290229411 501441.5538483489 391883.1101789842 480447.1366273748 0.9794475575229434 1.0744114099152393 0.9721181244269189 1.0483338910010318 1.0777703516602894 0.9886932758678593 0.9827289893687736 1.0436976633232742 0.8156633275617186 1.0 18.87401817511093 1.2635863637553533 24.99986618357173 0.9078315116870913 1.021955357263167 0.39772860730973314 0.05564285701884457 172.27936245551595 172101.71735769813 0.03387822920581592 0.012361190783159072 18.347899969888548 -1.2635863637553533 0.11412384557607569 SSS(ph)EITLSECDAEDAGEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSEITLSECDAEDAGEPR 19 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 SSS(1)EITLSECDAEDAGEPR;SS(0.015)S(0.985)EITLSECDAEDAGEPR 554.78 0.0 1878000000.0 778920.0 583950.0 489190.0 651140.0 560290.0 620640.0 553740.0 571180.0 803860.0 650360.0 True False 774726.3812661471 603386.4227447713 558063.6998842951 733574.2572371125 631639.6104009884 577736.6176294114 526953.4807077777 613804.3519932708 605759.4741721369 608853.467998791 1.2724348664918592 0.9910207536930207 0.9165812945413053 1.2048453294489063 1.0374246737512918 0.9488927106358513 0.8654848964559466 1.0081314868924909 0.9949183276612948 1.0 19.21573553273551 2.8870232619957585 4.648693875155495 0.9602336427556295 1.0805041693861601 0.2719429344928872 0.10084150258890433 0.3395301433818145 11.585192272754258 0.03134616693678976 0.03359809292456864 770.9447618605558 -2.8870232619957585 0.12027052663053062 SSS(ph)ENDVELLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSENDVELLTK 12 0 Q9C0D6 Q9C0D6 FHDC1 FH2 domain-containing protein 1 1 S(0.001)S(0.048)S(0.951)ENDVELLTK;SS(0.047)S(0.953)ENDVELLTK 281.93 4.3461999999999985e-28 230190000.0 1106490.0 1056020.0 887850.0 867930.0 798300.0 1220410.0 1207160.0 1130600.0 1517010.0 1230590.0 True False 1100532.780782597 1091168.9873224294 1012851.5626694564 977809.8490091317 899958.773105192 1136045.9292361264 1148765.0590009748 1214971.1130704726 1143163.2123925495 1152052.692638897 0.9552798997949578 0.9471519786330197 0.8791712125158216 0.8487544495637227 0.7811784815534282 0.986105875620927 0.9971462818854303 1.0546141863419929 0.9922837902266559 1.0 20.135775273665434 2.536736779952892 8.861662522356083 1.0157483488272974 0.8836472770196743 0.6213746452312721 0.048537621045249994 0.2858343492880096 40.625440262147876 0.017245952120707782 0.01620637208641436 344.14128813365346 -2.536736779952892 -0.1321010718076231 SSS(ph)ETILSSLAGSDIVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 S(0.034)S(0.034)S(0.931)ETILSSLAGSDIVK;S(0.11)S(0.11)S(0.779)ET(0.001)ILSSLAGSDIVK 274.02 1.1732999999999999e-35 172286000.0 345661.0 282557.0 250010.0 253752.0 265055.0 357315.0 283493.0 290765.0 464101.0 361589.0 True False 343799.9995825473 291961.7389356869 285209.23487412406 285876.9771822212 298808.18314593105 332614.6550790363 269779.3605415718 312463.36077475286 349729.5271847874 338512.0804480822 1.015621064771058 0.8624854349340282 0.8425378334994659 0.8445104139379933 0.8827105453678468 0.9825783902269025 0.7969563750412388 0.9230493646228249 1.0331375078899898 1.0 18.368847794475055 1.3533572387465875 4.777199594614776 1.0150397301878626 0.886536777259874 0.38874763272702384 0.06243808244885035 0.19862383421158744 6.648741569412795 0.04400837709939654 0.015246834052796079 22.560942504376897 -1.3533572387465875 -0.12850295292798863 SSS(ph)FPYTTK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSFPYTTK 9 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 S(0.001)S(0.029)S(0.968)FPYT(0.001)TK;SS(0.012)S(0.987)FPYTTK;SS(0.002)S(0.998)FPYTTK 141.88 0.00011083 731430000.0 1201940.0 1093900.0 867230.0 1026290.0 958540.0 1114140.0 963790.0 1001250.0 1613110.0 1279180.0 True False 1195468.8885880876 1130309.8002234874 989328.4459017095 1156218.2087721145 1080604.3872883024 1037122.1242034546 917167.7956646598 1075968.359244481 1215580.655066575 1197541.6372389025 0.9982691636045374 0.9438584555853713 0.8261328167116951 0.9654931175820618 0.9023522470415183 0.8660426426547329 0.7658754962201705 0.8984809594806862 1.015063374221596 1.0 20.191644387117602 4.473703330820278 24.707515852985733 0.8942880226770965 0.9846665182889407 0.12226349457341901 0.07282322992690003 125.0043621477147 903642.6735873539 0.017590765567580352 0.04871062330155424 29764.824816735567 -4.473703330820278 0.09037849561184419 SSS(ph)FSLPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 SS(0.013)S(0.987)FSLPSR;SS(0.016)S(0.983)FSLPSR;S(0.001)S(0.047)S(0.952)FSLPSR;SS(0.001)S(0.999)FSLPSR;S(0.001)S(0.035)S(0.964)FSLPSR 215.72 6.6003e-07 1511930000.0 2217890.0 2278350.0 2024540.0 2175820.0 2080510.0 2151150.0 2161580.0 1941130.0 2535160.0 2379140.0 True False 2205949.1266707443 2354183.5024583405 2309577.634382859 2451278.5889081485 2345450.6163511006 2002446.0637624227 2057016.117362511 2085986.9774584165 1910403.7874035751 2227301.2483157692 0.9904134558981768 1.0569668131953487 1.0369399452046755 1.1005599672526316 1.0530459757631228 0.8990459037710429 0.9235464304247019 0.9365535888042935 0.8577213292760356 1.0 21.086865268922207 2.74384542128154 24.714200366356916 0.9209614081280905 1.050458073332028 0.6896752307211724 0.04162193255078277 199.44714627706634 932708.3059847478 0.012341677312563882 0.012733374066399308 554.4283397934904 -2.74384542128154 0.12949666520393743 SSS(ph)FTLLQSLAIEDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSFTLLQSLAIEDSR 16 0 F8VWT9;J3KPF0;Q9Y4D8-4;Q9Y4D8;Q9Y4D8-2 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 S(0.109)S(0.109)S(0.782)FT(0.001)LLQSLAIEDSR;SS(0.019)S(0.981)FTLLQSLAIEDSR;SS(0.038)S(0.962)FTLLQSLAIEDSR;S(0.035)S(0.035)S(0.929)FTLLQSLAIEDSR;SS(0.001)S(0.999)FTLLQSLAIEDSR 497.45 8.48249999999999e-258 509432000.0 426481.0 452533.0 435919.0 445749.0 434802.0 485927.0 405373.0 388145.0 478794.0 403631.0 True False 424184.87368249346 467595.2873430247 497292.6061241276 502180.7776963249 490171.45742663706 452336.0102391198 385763.55931475793 417110.3508603734 360801.63421090046 377870.9240141157 1.1225655289282 1.237447121826069 1.3160382938210688 1.3289743819441517 1.297192840929794 1.1970648745184278 1.02088711991068 1.1038434670480015 0.9548277236525942 1.0 18.52753398643379 2.3576919755137586 3.4218981243550477 1.03505835100632 1.2653216795407962 0.7538124070237197 0.0648170171341032 0.12804746334831907 2.9453349798242767 0.025405462036782275 0.020530744444522336 227.8725306894284 -2.3576919755137586 0.23026332853447617 SSS(ph)ISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 44 0 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 S(0.158)S(0.158)S(0.672)IS(0.011)GVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 274.14 7.460499999999997e-81 201650000.0 30859.0 25872.0 22217.0 38030.0 25162.0 30173.0 30079.0 10113.0 37825.0 20226.0 True False 30692.858572757228 26733.133880045738 25344.960486374195 42844.59410069625 28366.23155314151 28087.21152960208 28623.963857061513 10867.683412773467 28503.53557903253 18935.159363650197 1.6209453526796438 1.411825132634759 1.3385131859533692 2.2627004757586024 1.4980719733257768 1.4833364214256926 1.5116832822654191 0.5739420093625484 1.5053232471732314 1.0 14.208779942951889 1.9044334606161062 8.22853075831588 0.9903170655311043 1.5980775656306776 0.3992938962148673 0.31722587424516785 0.2925972125773821 22.82996761670151 0.1326170318908606 0.08324176593195697 80.24786016256711 -1.9044334606161062 0.6077605000995733 SSS(ph)KESLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSKESLVR 9 1 Q13439-5;Q13439-3;Q13439-4;Q13439;E7EVX2;Q86W71 Q13439-5 GOLGA4 Golgin subfamily A member 4 1 S(0.01)S(0.044)S(0.945)KES(0.001)LVR;S(0.07)S(0.095)S(0.829)KES(0.006)LVR;S(0.002)S(0.061)S(0.937)KESLVR;S(0.009)S(0.075)S(0.903)KES(0.013)LVR 134.18 0.00015508 6718080000.0 4374200.0 3385590.0 2783380.0 2758120.0 2558400.0 3810780.0 4045310.0 3311030.0 5845220.0 3751990.0 True False 4350649.79321931 3498277.3165176245 3175255.710427339 3107297.709203588 2884197.075175157 3547349.7482112185 3849622.9007150973 3558115.871669664 4404743.852935169 3512534.78595975 1.238606891698172 0.99594097416512 0.9039784383401476 0.8846311562874851 0.821115590571181 1.0099116348656902 1.0959671961407331 1.0129766930400548 1.2540071832289728 1.0 21.744081082282825 2.4167261330733805 5.159073577209917 1.0820079826890252 0.957853903528416 0.17741851240901163 0.12193866186067007 0.3568783847178462 19.194732444295244 0.044114880696903905 0.03690311034581891 261.05146397442337 -2.4167261330733805 -0.12415407916060917 SSS(ph)KSEGSPSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSKSEGSPSQR 12 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6;A0A0D9SG62;G5E948;E7ENQ1;G3XAA2;C9J840;E7EX83;O95819-4;O95819-5 O95819-3 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 S(0.023)S(0.151)S(0.819)KS(0.006)EGS(0.002)PSQR;S(0.13)S(0.13)S(0.74)KSEGSPSQR 105.14 0.0012491 148762000.0 143745.0 104683.0 100947.0 109580.0 113579.0 110908.0 150056.0 129584.0 207145.0 143379.0 True False 142971.092891571 108167.31037279016 115159.46015294679 123452.81676450961 128042.61241452428 103241.1910093497 142797.2180104133 139254.21609421895 156096.8903507919 134228.42946706238 1.065132725304321 0.8058450121353224 0.8579364342574326 0.9197218298289265 0.9539157458885712 0.7691454889195699 1.063837359770745 1.0374420429942512 1.1629197404048872 1.0 17.03433073991949 2.2045943032045296 23.789625044968297 1.065580429182958 0.8932959843960778 0.4901216806282147 0.0853128415639098 89.34303622503798 62573.984239143356 0.03039260485099026 0.02244811420241596 160.17484160834823 -2.2045943032045296 -0.1722844447868802 SSS(ph)LDALGPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSLDALGPTR 11 0 Q9H425;Q9H425-3;Q9H425-2;E5RI90 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 SS(0.002)S(0.998)LDALGPTR;SS(0.001)S(0.999)LDALGPTR;SS(0.005)S(0.995)LDALGPTR;SS(0.001)S(0.998)LDALGPTR 268.14 2.7941999999999997e-21 4090070000.0 3721770.0 3483960.0 3164740.0 3386250.0 3364450.0 3751900.0 3357570.0 3165990.0 4602580.0 3787900.0 True False 3701732.40384752 3599921.5025017057 3610307.8835867983 3814948.9027999667 3792892.7648425023 3492539.9840226043 3195151.5119370352 3402252.25037147 3468335.8304122565 3546152.9790156493 1.0438727335657856 1.0151624940616581 1.018091409183638 1.0757993028994848 1.0695795661628065 0.9848813643093517 0.9010190848630434 0.959420608897667 0.9780558963293813 1.0 21.757823343943937 2.5417903008154625 5.341331659217487 0.9531913131259975 1.042454828195513 0.6480620265177057 0.02966951924027606 0.1292640114135226 7.286137143526867 0.01009178247311716 0.009352583238904161 348.1691608879916 -2.5417903008154625 0.08926351506951558 SSS(ph)LDGEHHDGYHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSLDGEHHDGYHR 14 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 S(0.313)S(0.313)S(0.375)LDGEHHDGYHR;S(0.129)S(0.129)S(0.742)LDGEHHDGYHR 174.52 4.2253e-06 2057340000.0 406660.0 412460.0 397960.0 473620.0 481030.0 451130.0 412230.0 207540.0 436720.0 363580.0 True False 404470.5877441732 426188.48176266503 453989.30886967113 533580.2434386478 542286.3192118133 419944.4449457916 392288.8600284735 223027.68866676593 329096.2077481847 340376.0131235018 1.1883052040961986 1.2521107990298572 1.3337876094839445 1.5676199933778645 1.5931978115480496 1.2337662724588623 1.1525161730069846 0.6552391474949285 0.966860751226837 1.0 18.376769845869898 2.0741543856637152 2.7015298604015476 0.8443976759619545 1.3800168381077156 0.6624534935862296 0.15422929334693294 0.1566003919508196 2.2421047488990906 0.0771964604881449 0.047470396396548334 118.61903474398696 -2.0741543856637152 0.5356191621457611 SSS(ph)LESLQTAVAEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSLESLQTAVAEVR 15 0 R4GN62;A0A087WZG6;A0A087X1S9;Q8TEW8-5;Q8TEW8-2;Q8TEW8 R4GN62 PARD3B Partitioning defective 3 homolog B 1 SS(0.002)S(0.998)LESLQTAVAEVR;SS(0.001)S(0.999)LESLQTAVAEVR;SSS(1)LESLQTAVAEVR;S(0.001)S(0.001)S(0.998)LESLQTAVAEVR 347.98 2.993899999999999e-82 902010000.0 925710.0 981380.0 923230.0 909150.0 907810.0 1071180.0 959200.0 893030.0 1136630.0 993560.0 True False 920726.0802160505 1014044.6400432622 1053212.7591409856 1024248.2967827504 1023414.2224885692 997131.8478864933 912799.8315001627 959672.4333144549 856522.7665616868 930150.1501704892 0.9898682272397512 1.0901945668206319 1.1323040252672538 1.101164469623548 1.1002677603191113 1.0720117044583897 0.9813467549651567 1.031739266115857 0.9208435502641082 1.0 19.827104097562124 2.2974429739982827 4.825062213374638 0.9906240605927187 1.0867267874345916 0.5467626873558795 0.04322240462809913 0.162074828610406 7.612303827113113 0.015690198648186465 0.012746079922933487 198.35491854038108 -2.2974429739982827 0.09610272684187293 SSS(ph)LESLQTAVAEVTLNGDIPFHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLESLQTAVAEVTLNGDIPFHR 24 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(0.089)S(0.089)S(0.821)LESLQTAVAEVTLNGDIPFHR 333.94 4.032599999999998e-87 52294000.0 21948.0 22009.0 24119.0 23321.0 20183.0 26032.0 23394.0 22600.0 29470.0 25028.0 True False 21829.83440665205 22741.556260278558 27514.745553893837 26273.43620884398 22753.18541598662 24232.469112736588 22262.342846241445 24286.526760474688 22207.513377768384 23430.69161245115 0.9316769119632645 0.9705883478144374 1.1743036018310449 1.1213256801554328 0.9710846693016734 1.034219113696984 0.9501359675790004 1.0365262435347296 0.9477958971542793 1.0 14.51611191894586 3.2025386465543004 24.999542633952576 0.9940920083393665 1.0527556136825542 0.1458277480405875 0.06995559863485556 368.689607186092 255872.63183433792 0.021479158781404828 0.025673191379838974 1594.1847360854351 -3.2025386465543004 0.05866360534318771 SSS(ph)LESLQTAVAEVTLNGDIPFHRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLESLQTAVAEVTLNGDIPFHRPR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-8;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q5VWU8;Q8TEW0-9;Q8TEW0-10;Q8TEW0-5;Q8TEW0-3;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 S(0.305)S(0.305)S(0.389)LES(0.001)LQTAVAEVTLNGDIPFHRPR 199.46 3.457199999999999e-25 54279000.0 15880.0 18139.0 15724.0 15367.0 16026.0 20689.0 16849.0 15920.0 15732.0 14035.0 True False 15794.50384443387 18742.74564974295 17937.80252454192 17312.46062438599 18066.816106456008 19258.818126667466 16033.949500569464 17108.03124012199 11855.059397999741 13139.27428403197 1.2020834258425348 1.4264673409338005 1.3652049677006555 1.3176116313688384 1.3750238952247484 1.4657444323293043 1.2203070850005289 1.3020529802710041 0.9022613533844162 1.0 13.68159797364641 1.2985250034307445 4.4174825298999485 0.9483770743288787 1.3410905717457398 0.7799953367800898 0.08122513801673403 0.08471107673544143 2.9603740045956948 0.06170255056425031 0.020069809622990403 19.88497289915007 -1.2985250034307445 0.392713497416861 SSS(ph)LESQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSLESQGK 9 0 Q9P2Q2 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 1 SS(0.003)S(0.997)LESQGK;SS(0.001)S(0.999)LESQGK 190.26 3.9087e-05 2005000000.0 3547200.0 2941600.0 2940200.0 2825400.0 2866000.0 2902400.0 3481100.0 3410600.0 4588800.0 3628700.0 True False 3528102.269330966 3039509.377765253 3354154.603323462 3183095.3503052127 3230968.111887116 2701763.9195146984 3312705.8939066036 3665116.2906758864 3457951.7267697165 3397113.2593136285 1.0385589175333538 0.8947330117510925 0.9873543645115777 0.9370000666237259 0.9510922554698452 0.7953116994576088 0.9751532083378112 1.0788914030544883 1.017908872272448 1.0 21.695877887607885 1.993849854873834 24.98835492784127 1.0375299425639282 0.9313664855840089 0.33386968390816507 0.06197005157501042 278.50089180876023 1131564.102488177 0.023366568662446838 0.016672714433901753 98.59385661196846 -1.993849854873834 -0.10616345697991925 SSS(ph)LGNLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLGNLKK 9 1 F5GZP6;Q86W92-3;Q86W92-4;Q86W92;H0YGH8;Q86W92-2 F5GZP6;Q86W92-2 PPFIBP1 Liprin-beta-1 1 SS(0.001)S(0.999)LGNLKK 127.52 0.00027142 768210000.0 1102000.0 799520.0 693420.0 697210.0 643520.0 993730.0 985090.0 952740.0 1380000.0 895170.0 True False 1096066.954443709 826131.5398799531 791047.5086853125 785476.7145134486 725468.457558128 925035.7840888025 937437.4332907583 1023838.2967156934 1039917.4910526073 838039.4842064056 1.3078941685923624 0.985790712071605 0.9439262989313768 0.9372788863967048 0.8656733617332143 1.1038093091339 1.1186077159341474 1.221706513846699 1.2408931925652325 1.0 19.67665869249847 2.4196452321095805 3.288776093010278 1.1687336242773607 0.9983852864145581 0.19456936485377985 0.12676203500487115 0.3297759066833683 7.318862862346482 0.04690626092710903 0.03902779535321036 262.81202473618396 -2.4196452321095805 -0.17034833786280257 SSS(ph)LIQLTSQNSSPNQQR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSLIQLTSQNSSPNQQR 18 0 O95639;H7C419 O95639 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSS(1)LIQLTSQNSSPNQQR;SSS(1)LIQLTSQNSSPNQQR;SSS(1)LIQLTSQNSSPNQQR;SSS(1)LIQLTSQNSSPNQQR 527.41 9.632399999999988e-296 2375990000.0 1269020.0 915340.0 819400.0 1067800.0 869950.0 993970.0 819710.0 891330.0 1099650.0 1196290.0 True False 1262187.7373213756 945806.538565286 934764.3976475229 1202983.370516 980732.9759023702 925259.1934537035 780057.4957037094 957845.5706820296 828655.9920550721 1119941.7480046027 1.1270119535861685 0.8445140474943692 0.8346544803004176 1.0741481623123277 0.875699988548279 0.8261672494147445 0.6965161331770476 0.8552637424121572 0.7399099047173536 1.0 20.094992264062014 3.0036785363780845 24.77571807361273 0.8119185824024736 0.9543751769008333 0.2674434522770057 0.11247709084540715 129.551511750629 872540.6141938514 0.03133894238735618 0.037287442381445254 1008.506116183867 -3.0036785363780845 0.14245659449835968 SSS(ph)LKER ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSLKER 7 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 S(0.002)S(0.003)S(0.996)LKER;S(0.001)S(0.007)S(0.992)LKER 114.86 0.015286 404147000.0 1670140.0 765850.0 581890.0 905090.0 438900.0 486192.0 637910.0 841530.0 1162850.0 1033500.0 True False 1661148.1518099995 791340.8542838984 663815.0541214517 1019674.3011990321 494791.3134358881 452582.69141286274 607051.8562471531 904329.2418027543 876281.1988916848 967541.1451761338 1.7168759799952482 0.8178885809965637 0.6860845736959423 1.0538821075287788 0.511390462206974 0.4677658347340602 0.627417096703049 0.9346674777723564 0.9056784853652545 1.0 19.883963488334057 4.737666961388733 4.816399735623566 0.7616493214765928 1.7688507025808964 0.6845237538826068 0.19122457676571936 0.10179374329126284 6.868972948032067 0.047584234796332274 0.3440645961668249 54659.664464171874 -4.737666961388733 1.0072013811043035 SSS(ph)LQGMDMASLPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSLQGMDMASLPPR 15 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 S(0.022)S(0.022)S(0.956)LQGMDMASLPPR;S(0.094)S(0.094)S(0.811)LQGMDMASLPPR;S(0.001)S(0.029)S(0.97)LQGMDMASLPPR 164.01 1.5795e-06 321320000.0 1098180.0 862280.0 855130.0 826050.0 846620.0 1107710.0 1070600.0 990460.0 1466480.0 1032360.0 True False 1092267.5208992686 890980.4685407323 975524.8710767952 930627.8453031849 954432.038690114 1031136.6149688646 1018810.9879108368 1064373.1546539702 1105085.653825239 966473.9009521364 1.1301572860096942 0.921887769202013 1.0093649400317402 0.9629104773407361 0.9875404165077204 1.0669058046503115 1.0541526128197976 1.1012952896145327 1.1434200682879767 1.0 19.882371248285306 2.628691552204784 3.293299400533469 1.0824680466015029 0.9959647804754672 0.24724838787029102 0.06050885082953586 0.3031771862563657 6.204823910376061 0.01967319064103864 0.018431385488958823 425.2962488392947 -2.628691552204784 -0.08650326612603565 SSS(ph)MADGDNSYCLEAIIR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSMADGDNSYCLEAIIR 18 0 Q9ULV0;A0A0A0MR36;Q9ULV0-2;Q9ULV0-3 Q9ULV0 MYO5B Unconventional myosin-Vb 1 S(0.037)S(0.037)S(0.926)MADGDNSYCLEAIIR;S(0.023)S(0.023)S(0.955)MADGDNSYCLEAIIR;S(0.019)S(0.019)S(0.962)MADGDNSYCLEAIIR;S(0.107)S(0.107)S(0.786)MADGDNSYCLEAIIR;S(0.018)S(0.018)S(0.964)MADGDNSYCLEAIIR;S(0.144)S(0.144)S(0.712)MADGDNSYCLEAIIR 200.58 1.5706e-15 1349138000.0 1551830.0 1496120.0 1536560.0 1552460.0 1437350.0 1730180.0 1639010.0 1437230.0 1907910.0 1750440.0 True False 1543475.119704522 1545917.4497763608 1752894.2919810573 1749001.2768226902 1620388.002659088 1610576.729005633 1559724.824673772 1544483.4007060612 1437731.1451841912 1638725.4205729202 0.9418753748049521 0.9433657587589551 1.0696693112676692 1.0672936752340219 0.9888099509023169 0.9828228138686919 0.9517914380851379 0.9424906584814491 0.8773471913809339 1.0 20.64414271078814 2.2966518983544675 1.8482451863651492 0.9348102535964539 1.005933198178163 0.2486676806909942 0.0486972735850189 0.4795329836096783 3.3223738497265694 0.024959371138117057 0.016868195736728656 197.99394015481522 -2.2966518983544675 0.07112294458170909 SSS(ph)MSSLTGAYASGIPSSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSMSSLTGAYASGIPSSSR 20 0 Q96HA1-2;Q96HA1-3;Q96HA1 Q96HA1-2 POM121 Nuclear envelope pore membrane protein POM 121 1 S(0.132)S(0.132)S(0.734)MS(0.001)S(0.001)LTGAYASGIPSSSR;SSS(0.991)MS(0.009)SLTGAYASGIPSSSR 456.44 9.043199999999992e-199 245580000.0 303780.0 220290.0 231100.0 269500.0 203313.0 276420.0 210710.0 229750.0 353430.0 303580.0 True False 302144.4822331306 227622.2194818831 263636.8712427905 303618.6723675425 229203.7054194365 257311.73602268967 200517.15230963205 246895.11164686104 266331.91221936495 284205.26449208613 1.0631206384340006 0.8009078223398687 0.9276283875808768 1.0683076997540872 0.8064724129197783 0.9053728701420823 0.7055363758584267 0.8687211058109586 0.9371111147266631 1.0 18.116573753107165 3.206722083090956 24.999989278843746 0.8547782703309137 0.9506024039282086 0.15426789762466508 0.10231328989402914 340.79127091323573 267592.35955448396 0.028840315626359157 0.03447356238142001 1609.6152687293738 -3.206722083090956 0.09582413359729491 SSS(ph)MSSLTGAYTSGIPSSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 S(0.005)S(0.205)S(0.786)MS(0.005)SLTGAYTSGIPSSSR;S(0.03)S(0.03)S(0.94)MSSLTGAYTSGIPSSSR 260.44 2.5810000000000004e-36 435290000.0 396740.0 286580.0 334840.0 347320.0 296410.0 348340.0 263800.0 304450.0 432690.0 357960.0 True False 394603.9959219581 296118.6420587315 381982.5615185462 391290.676388478 334156.0565402862 324260.0757041592 251038.98618613757 327169.60496577487 326059.3472489513 335114.68633502594 1.177519255385479 0.8836337353555771 1.1398562256285742 1.1676321341443419 0.9971393978425006 0.9676092661005762 0.7491136510059277 0.9762914557516346 0.9729783878316163 1.0 18.354295388190256 2.8764297965329186 2.9804854266059273 0.9192439907727792 1.0802020391698473 0.34001197346601275 0.10208662744296872 0.3030293879162306 5.160061853989318 0.032785649127067135 0.03542290532243905 752.3671006100614 -2.8764297965329186 0.16095804839706807 SSS(ph)MSYVDGFIGTWPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 S(0.094)S(0.094)S(0.811)MS(0.001)YVDGFIGTWPK;S(0.171)S(0.171)S(0.658)MSYVDGFIGTWPK 247.93 2.5146e-20 279730000.0 641690.0 456910.0 356310.0 446580.0 350330.0 431950.0 327530.0 393750.0 666910.0 548280.0 True False 638235.212338462 472117.97314207244 406475.3508979611 503116.9822111216 394942.44893140753 402090.31320092897 311686.1226138953 423133.6244219874 502558.96663615643 513288.30099387554 1.2434244285378273 0.919791026267138 0.7919045692467694 0.9801840042661029 0.769435906033089 0.7833615385785436 0.607234028148275 0.8243585984770694 0.9790968655686405 1.0 18.96940985306349 4.747065347553074 2.376635081467246 0.8230845448402844 1.349358150505886 0.5148923633199011 0.1152408771100408 0.445351203692827 2.9817534843502385 0.028928164692623503 0.4871928955959424 55855.42331209098 -4.747065347553074 0.5262736056656017 SSS(ph)PAELDLKDDLQQTQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPAELDLKDDLQQTQGK 19 1 H7C1F9;Q2PPJ7-3;Q2PPJ7-2;Q2PPJ7 H7C1F9 RALGAPA2 Ral GTPase-activating protein subunit alpha-2 1 S(0.001)S(0.036)S(0.962)PAELDLKDDLQQTQGK;SS(0.002)S(0.998)PAELDLKDDLQQTQGK 265.89 1.1234000000000002e-31 1219080000.0 1801840.0 1196610.0 1120550.0 1022260.0 1081520.0 1669180.0 1604850.0 1568010.0 2315300.0 1637660.0 True False 1792139.0936432418 1236438.4404839806 1278313.7000047988 1151678.0111853199 1219245.161328733 1553793.515427078 1527217.2743776431 1685022.8683934473 1744725.3384305085 1533143.1367287352 1.168931361142917 0.8064729318895606 0.8337862717321584 0.7511875333719024 0.7952585326965845 1.0134693090316436 0.9961348277214768 1.099064286971129 1.1380055107921794 1.0 20.54806096495668 2.533311145281378 3.1037480013904375 1.0659075737713757 0.8594652830162006 0.373792391912222 0.11486166997669973 0.26065188972965536 4.9921315444197445 0.04117891878484867 0.036726723740525255 341.4374429405532 -2.533311145281378 -0.20644229075517506 SSS(ph)PAGETEGDREPQAR ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSPAGETEGDREPQAR 17 1 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 SS(0.003)S(0.997)PAGETEGDREPQAR;S(0.002)S(0.081)S(0.917)PAGETEGDREPQAR;S(0.007)S(0.096)S(0.897)PAGETEGDREPQAR;S(0.001)S(0.078)S(0.921)PAGETEGDREPQAR;S(0.001)S(0.003)S(0.996)PAGETEGDREPQAR;SS(0.012)S(0.987)PAGETEGDREPQAR 295.17 2.5028e-46 8945920000.0 2009085.0 1961495.0 1838048.0 1861720.0 1812892.0 2046955.0 1848285.0 1828371.0 1991519.0 1927940.0 True False 1998268.3095903299 2026782.175326235 2096829.1818003852 2097413.5611135503 2043753.0503472646 1905453.8188637707 1758876.3934156373 1964813.328299817 1500735.8274373924 1804897.2186075232 1.1071368989819776 1.1229349540966636 1.1617443698085408 1.1620681440972596 1.1323376363358897 1.0557132002972596 0.9745022460462369 1.088601227839261 0.8314799380073337 1.0 20.783485253291374 2.275271494952789 1.0117693529021128 0.9629181377129755 1.1432760368058967 0.6096656859963798 0.06122069740823448 0.38624267777804283 0.7607842432526943 0.04289016331011277 0.025043810194145987 188.4827002458976 -2.275271494952789 0.18035789909292121 SSS(ph)PAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(0.109)S(0.109)S(0.731)PAGET(0.05)EGDREPQARPGEGTAPLPPPGQK;S(0.021)S(0.021)S(0.957)PAGET(0.001)EGDREPQARPGEGTAPLPPPGQK;S(0.018)S(0.018)S(0.964)PAGETEGDREPQARPGEGTAPLPPPGQK 259.91 7.5608e-59 2182690000.0 897900.0 911850.0 868230.0 873060.0 905230.0 1036250.0 1068600.0 1016860.0 1391660.0 1149760.0 True False 893065.8061660689 942200.3760250359 990469.2372095552 983589.306483142 1020505.6747814273 964616.4765701168 1016907.7355515792 1092743.256710454 1048704.0402886032 1076381.3324409402 0.8296927670984766 0.8753406879403803 0.9201843318514641 0.9137926094023099 0.9480893471714136 0.8961661146451034 0.9447467220984861 1.0152008621632347 0.9742867222626647 1.0 20.03775784513605 7.99999999999996 0.18967130711319133 1.0185999381366322 0.19024692991152414 0.7906681612372528 0.024718159516054643 24.640897263268805 0.28728130176658007 0.054409187067184464 5.979101039066384 99999999.99999079 -7.99999999999996 -0.828353008225108 SSS(ph)PALKPKPNPPS(ph)PENTASSAPVDWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPALKPKPNPPSPENTASSAPVDWR 27 2 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 2 S(0.32)S(0.335)S(0.351)PALKPKPNPPS(0.898)PENT(0.032)AS(0.032)S(0.032)APVDWR 46.082 0.072074 190320000.0 48399.0 40176.0 39519.0 35309.0 34400.0 53091.0 47641.0 44919.0 68095.0 53730.0 True False 48138.425161634426 41513.233873095116 45082.93169469425 39779.11577968669 38780.63609522567 49420.94413277112 45336.42282370649 48271.08387406027 51313.899676251676 50300.905399432675 0.95700911900837 0.8252979453042475 0.8962648154480878 0.7908230570365706 0.7709729235939968 0.9825060551162269 0.901304309807072 0.9596464216845827 1.0201386887328359 1.0 15.618296747841002 2.003688627684629 1.1111239871373881 1.0030016390777028 0.8531053089126797 0.4796568343825308 0.0608379633263142 0.4375087187084378 0.996749804756243 0.04699825704664103 0.021946063775590902 100.85295501970403 -2.003688627684629 -0.14989633016502313 SSS(ph)PAPADIAQTVQEDLR ddPTM_BT-474_Trastuzumab_2h_R1 11 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 S(0.002)S(0.002)S(0.995)PAPADIAQTVQEDLR;S(0.001)S(0.001)S(0.998)PAPADIAQTVQEDLR;S(0.001)S(0.027)S(0.973)PAPADIAQTVQEDLR;SS(0.001)S(0.999)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;S(0.001)S(0.014)S(0.985)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;S(0.001)S(0.001)S(0.998)PAPADIAQTVQEDLR;S(0.001)S(0.002)S(0.998)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR 454.58 2.501899999999998e-191 222210190000.0 18942330.0 20196600.0 19622580.0 19493180.0 19903752.0 20897020.0 20367480.0 19932670.0 23384300.0 21478040.0 True False 18840346.59997069 20868831.62189747 22385268.701477114 21961014.58931925 22438376.838419173 19452458.19369387 19382227.181070607 21420147.051447377 17621552.598566324 20107293.09892482 0.9369906982147749 1.0378737465667804 1.11329101293471 1.0921914989389374 1.1159322504538913 0.967432965640414 0.9639401527452254 1.0652924262884873 0.8763761741508899 1.0 24.261215539210728 2.7213410820963 24.82632347187431 0.9849036880702116 1.0628996622317544 0.29241727149185526 0.0647319762302275 1086.997145864383 1567180.6229668993 0.02148752345778658 0.020303328937959997 526.4305471287636 -2.7213410820963 0.0779959741615428 SSS(ph)PAPPSQQSLYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPAPPSQQSLYK 14 0 I3L3F1;A0A494BZY0;A0A494C199;A0A494C0J4;A0A494C1N2;Q9BXL6-3;Q9BXL6-2;Q9BXL6 I3L3F1 CARD14 Caspase recruitment domain-containing protein 14 1 SSS(1)PAPPSQQSLYK;SS(0.002)S(0.998)PAPPSQQSLYK 326.76 2.732899999999999e-68 497490000.0 731440.0 733930.0 712650.0 651150.0 646180.0 836600.0 848050.0 725110.0 897080.0 743900.0 True False 727502.0083106235 758358.4163799463 812984.9255351572 733585.5232360867 728467.1927910725 778767.8111445694 807026.581634396 779221.3902339735 676006.6542561399 696423.6651151686 1.0446256276921828 1.08893257706074 1.1673711940858769 1.0533609927152212 1.0460115433765522 1.1182385811311906 1.1588155630824764 1.1188898787710102 0.9706830599220774 1.0 19.40960570236007 1.2380396982175932 24.99997123406919 0.9853414806322134 1.102475346901341 0.5435158442243937 0.04178963299726662 10.44402892407942 501002.98314098135 0.03451283854134201 0.010618744550496858 17.299744864023488 -1.2380396982175932 0.1171338662691277 SSS(ph)PATEQSWMENDFDELR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPATEQSWMENDFDELR 19 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.054)S(0.054)S(0.893)PATEQSWMENDFDELR;S(0.105)S(0.105)S(0.789)PATEQSWMENDFDELR 432.26 1.947299999999998e-169 741030000.0 351450.0 387850.0 382990.0 342620.0 337220.0 351910.0 360450.0 350170.0 323890.0 350980.0 True False 349557.8322497659 400759.3527897235 436911.6629912434 385995.65687037946 380162.96814046544 327583.2900070353 343013.65644728293 376301.4635272313 244071.64940364435 328580.15591090394 1.0638434061262976 1.2196699818305257 1.3296958295610344 1.174738187704324 1.1569869978500724 0.9969661408763256 1.0439268783483464 1.1452349046582935 0.7428070290094619 1.0 18.325885828025427 2.8762672078042875 2.5340076029104153 1.0102352808685628 1.2078136434339124 0.4386272926862598 0.11338774818167253 0.3072026394024692 3.8576036359962482 0.03814301190444632 0.04129194979407106 752.085486358975 -2.8762672078042875 0.19757836256534955 SSS(ph)PATEQSWMENDFDELREEGFR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.027)S(0.027)S(0.946)PATEQSWMENDFDELREEGFR;S(0.014)S(0.014)S(0.97)PAT(0.001)EQSWMENDFDELREEGFR;S(0.022)S(0.022)S(0.957)PATEQSWMENDFDELREEGFR;S(0.006)S(0.029)S(0.965)PATEQSWMENDFDELREEGFR;S(0.024)S(0.024)S(0.951)PATEQSWMENDFDELREEGFR 238.23 1.1047e-37 1715340000.0 29137.9 14852.100000000002 20006.7 18508.8 28382.2 31042.199999999997 16020.5 21363.399999999998 33544.5 20558.2 True False 28981.02478392503 15346.443170215962 22823.46945864622 20852.01218224998 31996.50493552075 28896.325779478804 15245.527210746824 22957.645389147117 25277.907448271177 19246.158075239466 1.5058083109693279 0.7973769679237667 1.1858714538985853 1.08343764509949 1.6624879007247082 1.5014074843672023 0.7921335339316616 1.192843023495819 1.3134001783343798 1.0 14.232282862812411 -1.3152816359994872 0.45888849623070915 0.8964753631837142 1.2155085245018886 0.05336482593773728 0.2740370064332771 97.11145814961822 10.888214292215302 12.535483744130769 0.14653679636614328 0.0483858488016942 1.3152816359994872 0.3190331613181744 SSS(ph)PATEQSWMENDFDELREEGFRR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.33)S(0.33)S(0.339)PATEQSWMENDFDELREEGFRR;S(0.079)S(0.4)S(0.521)PATEQSWMENDFDELREEGFRR;S(0.308)S(0.308)S(0.383)PATEQSWMENDFDELREEGFRR 245.19 4.2703e-39 893830000.0 83772.0 106865.0 85518.0 89790.0 102134.0 96715.0 87393.0 72860.0 113254.0 105970.0 True False 83320.98085994419 110421.93692374337 97558.19106421882 101157.404793624 115140.15950435397 90029.31969262137 83165.46671631953 78297.18317558338 85344.0692258493 99206.90387451857 0.8398707913043267 1.113046901084728 0.9833810677895449 1.0196609393391867 1.1606063187899556 0.9074904686723676 0.8383032175009817 0.7892311937747523 0.8602634080164057 1.0 16.598152901763967 2.506975340534482 10.50722006446358 0.8500289445301229 1.0267495697175575 0.3654404788802277 0.09415410718870246 0.5981067237691702 208.47079824743483 0.029318362274526204 0.027223576072728222 321.34780705115793 -2.506975340534482 0.1767206251874346 SSS(ph)PELVTHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 S(0.009)S(0.349)S(0.642)PELVTHLK;S(0.223)S(0.223)S(0.555)PELVTHLK;S(0.257)S(0.257)S(0.485)PELVTHLK;S(0.069)S(0.071)S(0.86)PELVTHLK;S(0.306)S(0.306)S(0.388)PELVTHLK;S(0.234)S(0.234)S(0.532)PELVTHLK 244.72 4.3754e-16 14844390200.0 12779898.0 13560192.0 12599632.0 11864514.0 12058233.0 14900040.0 14441133.0 12961274.0 17312163.0 13470204.0 True False 12711092.449148139 14011534.793410849 14373550.667635405 13366560.255903985 13593777.497803519 13870035.305721402 13742560.226304684 13928510.081895795 13045812.399749143 12610524.048298148 1.0079749580956996 1.111098534822728 1.1398059757536552 1.0599527985284536 1.077970863521573 1.099877788789692 1.089769162143528 1.1045147710396315 1.0345178637924837 1.0 23.58812489437184 1.05839343134454 4.1711984618189515 1.0005977492604579 1.0889816111447272 0.4246641648724514 0.03318627688068029 0.1629799370670575 5.630693782793055 0.03056492508685656 0.007821531415113409 11.439141478349324 -1.05839343134454 0.08838386188426939 SSS(ph)PFLSK ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSPFLSK 8 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 S(0.014)S(0.014)S(0.973)PFLSK;S(0.041)S(0.041)S(0.917)PFLSK;SS(0.018)S(0.982)PFLSK;S(0.005)S(0.005)S(0.99)PFLSK 132.25 0.0010178 2590360000.0 6770900.0 8561900.0 8096600.0 6893200.0 7965600.0 9380200.0 9603200.0 8665400.0 10954200.0 8809100.0 True False 6734446.226717717 8846877.665722156 9236530.903091207 7765878.413224273 8979971.944189817 8731768.852615697 9138656.528213466 9312056.150009606 8254684.188759774 8246895.69615005 0.8166037833922892 1.072752462463203 1.120000936522473 0.9416729275295269 1.0888911749401649 1.058794627012441 1.1081329102391488 1.1291589578799708 1.0009444150740696 1.0 22.97541973030972 4.739460808069667 24.78433082837663 1.0663382882381265 0.8166036957942172 0.607587235317378 0.057791148319305465 43.121116798826144 1187013.6138235333 0.013627261092550394 0.08278296421372168 54885.902282201205 -4.739460808069667 -0.24973459244390928 SSS(ph)PGKPQAVSSLNSSHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.005)S(0.133)S(0.862)PGKPQAVSSLNSSHSR;S(0.294)S(0.294)S(0.412)PGKPQAVSSLNSSHSR 226.81 8.5531e-20 3615550000.0 663210.0 788520.0 863080.0 879620.0 868720.0 1061680.0 1124590.0 1004260.0 1144420.0 1093580.0 True False 659639.3510495583 814765.4115295942 984594.1619741569 990979.8018105305 979346.3426931517 988288.5605258984 1070189.2853490086 1079202.9807289501 862393.0254423372 1023786.7881390586 0.6443132092460261 0.7958350517597483 0.9617179801312514 0.9679552552263724 0.9565920893287884 0.9653265425727113 1.0453243758832793 1.0541286459562755 0.8423560798336853 1.0 19.965483863058303 4.522473588008756 1.6147396961404938 0.9874085149944992 0.5890550928303951 0.7848853178099302 0.055823736844030615 0.28700034739699115 0.9897575910239019 0.015360949579262151 0.15791123389727393 33302.25086435124 -4.522473588008756 -0.3983534221641041 SSS(ph)PIPLT(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPIPLTPSK 11 0 Q8N5Y2;Q8N5Y2-3;Q8N5Y2-2;A0A3B3IT59;Q8N5Y2-6;Q8N5Y2-4;A0A3B3ITL5;A0A3B3ITF3;A0A3F2YNX2;A0A3B3IRN2 Q8N5Y2 MSL3 Male-specific lethal 3 homolog 2 SS(0.011)S(0.989)PIPLT(1)PSK 192.65 0.0019112000000000005 0.0 417710.0 329500.0 296690.0 242780.0 275930.0 429990.0 342440.0 326860.0 530330.0 344650.0 True False 415461.095771944 340467.2083130441 338461.3731242904 273515.92310720554 311068.04993475607 400265.80338758486 325874.86895216425 351251.9529614495 399637.27755791973 322654.1419302901 1.2876360219225234 1.0552079272132902 1.0489912545347564 0.8477062202607617 0.9640912962523283 1.2405413455813095 1.0099819794737672 1.0886330200507328 1.2385933593385017 1.0 18.299629019999323 1.4638589318386312 10.746191062783218 1.1340101122063113 1.058313198461284 0.022895674242960684 0.13052202810282534 0.3951898379104953 203.8320483462396 0.072018110794837 0.032945041645852935 29.09771808261739 -1.4638589318386312 -0.0756969137450274 SSS(ph)PIPLTPSK ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSPIPLTPSK 11 0 Q8N5Y2;Q8N5Y2-3;Q8N5Y2-2;A0A3B3IT59;Q8N5Y2-6;Q8N5Y2-4;A0A3B3ITL5;A0A3B3ITF3;A0A3F2YNX2;A0A3B3IRN2 Q8N5Y2 MSL3 Male-specific lethal 3 homolog 1 SS(0.015)S(0.985)PIPLTPSK;S(0.001)S(0.016)S(0.983)PIPLTPSK;S(0.224)S(0.224)S(0.551)PIPLTPSK;SS(0.002)S(0.998)PIPLTPSK;SS(0.016)S(0.984)PIPLTPSK 188.27 3.3810000000000007e-06 5459300000.0 11432090.0 13102030.0 12016050.0 11437030.0 10966990.0 14266060.0 13745140.0 13776040.0 17890750.0 14582190.0 True False 11370540.89766461 13538123.148205604 13707805.39462108 12884956.82533488 12363571.17005753 13279880.850893006 13080235.066666136 14804078.0581137 13481814.386267705 13651542.149759043 0.8329125583709461 0.9916918542748344 1.0041213838147238 0.9438462471115255 0.9056538107144 0.9727751418272845 0.9581507292857027 1.0844253268759823 0.9875671362524904 1.0 23.702560598956627 1.8895764091354827 7.566238832517551 1.0314454036045448 0.947048778025694 0.33468525080415334 0.05137190944045724 0.2942930362151725 18.05350368940071 0.021591639885354258 0.013441206966006092 77.54903699985304 -1.8895764091354827 -0.08439662557885086 SSS(ph)PPILTKPTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPPILTKPTLK 13 1 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ITI3 A0A3B3IS53 KAT6A Histone acetyltransferase KAT6A 1 S(0.146)S(0.146)S(0.708)PPILT(0.001)KPTLK;S(0.005)S(0.055)S(0.939)PPILTKPTLK 65.467 0.035434 3574900000.0 4953500.0 5407800.0 4879500.0 4817900.0 4794200.0 5622700.0 5564900.0 5287700.0 7158900.0 5430300.0 True False 4926830.906385587 5587795.353915864 5566491.1866256865 5427845.646009579 5404712.95255031 5234015.983412107 5295704.527017567 5682295.024396545 5394685.0193453 5083733.604886271 0.9691363256426584 1.099151880921752 1.0949612271727631 1.0676888420731885 1.0631385065801888 1.0295614188716322 1.0416959145789146 1.117740516327402 1.0611659537313591 1.0 22.277457002306903 -0.7059067962180702 5.797782153549685 0.9999999979544921 1.0651144110006519 0.16329230982451282 0.039836221027401614 1.1222123645734042e-09 1.9355890233233023e-10 0.037655197634978224 0.008875414999823276 0.1968308662393844 0.7059067962180702 0.06511441304615972 SSS(ph)PPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPPPR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 SS(0.008)S(0.992)PPPR;S(0.002)S(0.01)S(0.988)PPPR;S(0.001)S(0.001)S(0.998)PPPR 91.516 0.017147 1205698000.0 897827.0 921803.0 806103.0 840263.0 904397.0 614059.0 907786.0 825189.0 938124.0 960605.0 True False 892993.199189957 952484.6556133187 919595.2956271184 946640.2096458928 1019566.5971690059 571610.5466694041 863872.9231007167 886768.7934048371 706935.9104175633 899298.3664846824 0.9929887926747025 1.059141983473782 1.0225697386972643 1.0526430881291018 1.1337356267580543 0.6356183531210053 0.9606076862760885 0.9860673903714261 0.7860971806064149 1.0 19.778440322582448 SSS(ph)PPPRK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPPPRK 8 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.3)S(0.3)S(0.4)PPPRK;S(0.042)S(0.181)S(0.777)PPPRK;S(0.3)S(0.3)S(0.4)PPPRK 78.939 0.017971 4457750000.0 4749140.0 4503010.0 4012990.0 3735170.0 3958010.0 3176850.0 4662030.0 4496040.0 5998790.0 5220240.0 True False 4723571.157919056 4652889.965722973 4577984.110465623 4208042.139024394 4462039.112536742 2957241.837000508 4436509.798215907 4831557.335228516 4520468.584167734 4887079.813927681 0.9665426671480498 0.9520797987507201 0.9367524748457828 0.8610545150156748 0.9130276734626646 0.6051142910685987 0.9078038352417132 0.9886389253269545 0.9249835804369017 1.0 22.220541235647534 1.9929611928627837 24.99230668244564 0.9645142350897611 0.8699811390715037 0.1677275005778438 0.09798662085485015 626.8568634437967 2225747.093576464 0.03997487807823936 0.028392437514775073 98.39231816692372 -1.9929611928627837 -0.09453309601825743 SSS(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSPQPK 7 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.006)S(0.264)S(0.73)PQPK;SS(0.017)S(0.982)PQPK;S(0.011)S(0.098)S(0.891)PQPK 83.78299999999999 0.03696 568920000.0 3378800.0 2671090.0 2385250.0 2869440.0 2883980.0 6569700.0 3355600.0 3098650.0 3981800.0 2768970.0 True False 3360608.916219969 2759995.615941999 2721072.4670353336 3232710.809789686 3251237.758311309 6115552.102410321 3193276.8083631597 3329886.9976258813 3000538.7433864316 2592251.9639655175 1.2964051963062462 1.0647096248004666 1.0496944374468722 1.247066587170956 1.2542136349036468 2.359165770697308 1.231854330810582 1.2845537563146296 1.1575027370396256 1.0 21.30577452269205 2.987974502649382 24.955208752250325 1.4385887079920698 1.1618318835471375 0.09338113100458434 0.3510954067553556 1286.0321878284176 2668770.658994121 0.10734890917532659 0.11967186215025558 972.6901156395134 -2.987974502649382 -0.2767568244449323 SSS(ph)PTQYGLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 S(0.018)S(0.035)S(0.946)PT(0.001)QYGLTK 93.348 0.0097728 143530000.0 198270.0 182560.0 156400.0 170920.0 158250.0 209050.0 199720.0 182680.0 261090.0 212960.0 True False 197202.53634986797 188636.3992401494 178419.7605468303 192558.4544751778 178402.19947876342 194598.86555076748 190058.78059550945 196312.50923024412 196747.86792675778 199368.7104757712 0.9891348340432463 0.9461685275988878 0.8949235821461223 0.9658408985826238 0.8948354987752415 0.976075258180579 0.9533029538183568 0.9846706073473928 0.986854293520989 1.0 17.605079481045777 1.8683809953798416 1.1833623104944382 0.995801811385316 0.9392413011342009 0.351732018173601 0.028785647605075817 0.5010813356746753 1.296882345450654 0.022235931899048423 0.009427887607648941 73.85518585652135 -1.8683809953798416 -0.05656051025111508 SSS(ph)PTSYWK ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSPTSYWK 9 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 SS(0.002)S(0.994)PT(0.004)SYWK;SSS(0.999)PTSYWK;SSS(1)PTSYWK;SS(0.019)S(0.98)PTSYWK;SS(0.079)S(0.92)PTSYWK 166.97 6.3292e-05 5254900000.0 11342290.0 10841800.0 10328280.0 9311190.0 9398160.0 12210780.0 12245700.0 10957830.0 13226660.0 11306580.0 True False 11281224.370886898 11202662.758993503 11782412.048980907 10489985.699302178 10594959.968741441 11366677.519684289 11653328.707883185 11775558.917333277 9967126.87116369 10584984.384349862 1.0657761940174841 1.0583542074522936 1.1131251233966362 0.9910251464151292 1.000942427879849 1.0738492478543642 1.100930174740068 1.112477684402039 0.9416288687114468 1.0 23.335515805202043 SSS(ph)PVGLAK ddPTM_BT-474_Trastuzumab_2h_R1 7 SSSPVGLAK 9 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 SS(0.015)S(0.984)PVGLAK;S(0.002)S(0.028)S(0.97)PVGLAK;S(0.003)S(0.234)S(0.764)PVGLAK;SS(0.001)S(0.999)PVGLAK;SS(0.009)S(0.991)PVGLAK;SS(0.001)S(0.999)PVGLAK;SS(0.002)S(0.998)PVGLAK 179.2 5.253e-05 18346860000.0 37294380.0 33054000.0 29768220.0 28907170.0 29368450.0 40549560.0 38028800.0 34804650.0 50969800.0 39584480.0 True False 37093591.20187515 34154182.4084351 33959326.62599332 32566814.758081093 33108348.02705899 37746464.3605969 36189201.65987636 37401949.717431605 38408975.7503284 37058164.59642168 1.0009559730180726 0.9216371825315118 0.9163790758615287 0.8788026906552661 0.8934157529824323 1.018573498490038 0.9765513768420893 1.0092769063107654 1.0364511078359544 1.0 25.143288094059926 2.733054896942957 24.997087331353423 1.0061432249628968 0.9194661645198134 0.6262315193592125 0.03314105053497456 313.20105991256656 1421991.8306510358 0.010996059402169411 0.010643336754601796 540.8226812525569 -2.733054896942957 -0.08667706044308332 SSS(ph)PVTELASR ddPTM_BT-474_Trastuzumab_2h_R1 7 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SS(0.001)S(0.999)PVTELASR;SSS(1)PVTELASR;SSS(1)PVTELASR;SS(0.004)S(0.996)PVTELASR;SS(0.001)S(0.999)PVTELASR;SS(0.001)S(0.999)PVTELASR;S(0.001)S(0.099)S(0.9)PVTELASR 365.23 1.1280999999999994e-85 27590400000.0 7989840.0 8824620.0 8107610.0 7234160.0 7881830.0 8436340.0 7994620.0 7569700.0 8747450.0 7951230.0 True False 7946823.5891946815 9118342.14210456 9249091.01539057 8150003.914264856 8885534.3312335 7853155.672808249 7607889.68818581 8134589.452157756 6591758.157324742 7443775.694009507 1.0675796686874928 1.2249619705014334 1.2425268298766603 1.0948750001727883 1.1936864699435086 1.054996280869693 1.0220471439391137 1.092804214762166 0.8855396009083885 1.0 22.827603152123746 2.278914239548679 0.8215759561427444 0.9765229286315606 1.1779947792855987 0.5575408498223361 0.06927648826144576 0.4784201179589051 0.6212642710482924 0.05327442034290303 0.032717370917813716 190.0702909658228 -2.278914239548679 0.20147185065403805 SSS(ph)PVTELASRS(ph)PIR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.294)S(0.331)S(0.375)PVT(0.234)ELAS(0.202)RS(0.563)PIR 54.672 0.08239400000000001 541740000.0 211580.0 249980.0 225880.0 257260.0 272040.0 261460.0 253370.0 251130.0 268800.0 298340.0 True False 210440.87678874776 258300.43318389906 257681.94061584363 289829.0896225381 306682.6814925926 243385.88561063746 241113.5251326064 269870.59581230086 202557.84173546435 279299.68577827537 0.753459053139817 0.9248146214849423 0.9226001808695439 1.0376993042971827 1.0980416273581328 0.8714148207236136 0.8632788986523121 0.9662402414105833 0.7252347641245352 1.0 18.09145442497419 -0.24784302961300947 7.482757971351355 0.9999999956879835 0.9181511127976036 0.053215967320675794 0.10888735517101664 14181867.514334 1895272.6672764528 0.10452007537372125 0.025349841551325133 0.5651412012232776 0.24784302961300947 -0.08184888289037984 SSS(ph)PVTELASRS(ph)PIRQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.093)S(0.167)S(0.739)PVT(0.002)ELAS(0.083)RS(0.916)PIRQDR 79.426 0.050565 539270000.0 393420.0 470260.0 443000.0 600370.0 508200.0 570370.0 578560.0 475460.0 652930.0 555330.0 True False 391301.87043307145 485912.319821827 505370.5493749733 676376.7804426763 572916.257662607 530941.66440656 550572.8424861697 510941.2395369596 492024.1503137533 519888.3639580677 0.7526651826826276 0.9346474233861077 0.9720751307596771 1.30100388339761 1.1019986162044901 1.0212609114086342 1.0590212835203536 0.982790296837977 0.9464034674056259 1.0 18.987842339892914 4.556490465927048 1.9920045038354646 1.055112181352013 0.7265863539412002 0.4883685014154515 0.09430369239629854 0.45502558089502 2.5790742273853886 0.02603966238550659 0.23805020310551564 36015.58438015683 -4.556490465927048 -0.3285258274108128 SSS(ph)QIPEGFGLTSGGSNYSLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSQIPEGFGLTSGGSNYSLAR 22 0 Q9Y4E6-2;Q9Y4E6;A2RRE0 Q9Y4E6-2 WDR7 WD repeat-containing protein 7 1 S(0.141)S(0.141)S(0.719)QIPEGFGLTSGGSNYSLAR;S(0.13)S(0.13)S(0.739)QIPEGFGLTSGGSNYSLAR;S(0.011)S(0.011)S(0.978)QIPEGFGLTSGGSNYSLAR 343.85 9.095599999999995e-82 495108000.0 247330.0 208583.0 217592.0 229554.0 227298.0 252833.0 241150.0 212149.0 279648.0 249512.0 True False 245998.4027609461 215525.55906391382 248227.06225643135 258615.5128632982 256243.05299920365 235355.24981486355 229484.65321753986 227980.6356507937 210732.4974912174 233587.93054202976 1.0531297665513728 0.9226742090817661 1.0626707539230824 1.1071441587893396 1.0969875558407651 1.0075659699913981 0.9824336928925718 0.9759949288551656 0.9021549058730157 1.0 17.833606206715512 2.2812291941454927 2.4344556595464866 0.961275935049141 1.0456209895327186 0.35722013135947484 0.052515309895300795 0.3591926603421679 4.367633329852461 0.024099366239371783 0.01742873657638298 191.0861428660582 -2.2812291941454927 0.08434505448357765 SSS(ph)QPSSCCSDPSKPGGNVEGATQSLAEQMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;Q13501-2;E7EMC7 Q13501 SQSTM1 Sequestosome-1 1 S(0.027)S(0.136)S(0.836)QPS(0.001)S(0.001)CCSDPSKPGGNVEGATQSLAEQMR 183.27 1.6475999999999996e-18 232000000.0 234120.0 215510.0 203480.0 211510.0 239030.0 256530.0 233800.0 261130.0 328140.0 239690.0 True False 232859.52393317755 222683.12007145394 232128.21532013416 238287.14431339136 269469.05365819123 238796.6849066656 222490.20079726673 280616.84659127204 247274.2938507266 224392.77899106665 1.0377318066124044 0.9923809539357736 1.034472750700126 1.0619198415599544 1.2008811284828338 1.0641905946366144 0.9915212147095176 1.2505609487658413 1.1019708163629047 1.0 17.77566672488709 3.4712917345909444 24.63469026966298 1.115335417845143 1.0235441583384066 0.16816901584127164 0.0763691709042272 186.0231387883101 786101.2711129916 0.021446479475162285 0.02912293843282879 2960.000160385964 -3.4712917345909444 -0.09179125950673628 SSS(ph)SERPEPQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSERPEPQQK 12 1 P78362;C9J2M4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 SS(0.007)S(0.989)S(0.003)ERPEPQQK;S(0.001)S(0.037)S(0.96)S(0.002)ERPEPQQK 141.59 3.6726e-05 360450000.0 339670.0 316630.0 292840.0 287100.0 291270.0 350080.0 358970.0 353180.0 498280.0 378810.0 True False 337841.2544608852 327168.8381431235 334069.3265890905 323446.83056297345 328361.508007453 325879.7935996784 341605.2497014322 379536.085011701 375485.5706099232 354634.0214844422 0.9526476141424189 0.9225534447418391 0.9420115001677756 0.9120580964259322 0.9259165452682273 0.9189185860837515 0.963261359616673 1.0702190484235627 1.0587973738058174 1.0 18.43597142091725 1.8938747403919112 3.98695133490934 1.0482093007243756 0.9290123834479027 0.8592925121469114 0.020547946265085333 0.07130743134679961 1.8614370257450639 0.009476375291834946 0.005351165400491625 78.3203717860891 -1.8938747403919112 -0.11919691727647286 SSS(ph)SGSDDYAYTQALLLHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSSGSDDYAYTQALLLHQR 20 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 S(0.078)S(0.078)S(0.841)S(0.003)GSDDYAYTQALLLHQR 356.41 1.5367999999999992e-95 283690000.0 83668.0 75385.0 66792.0 93280.0 94101.0 90426.0 69007.0 75980.0 110280.0 95053.0 True False 83217.5407843887 77894.14415380526 76195.7330335286 105089.23843578612 106084.2045696753 84175.06345990773 65668.86777766018 81650.01341862239 83102.97167629105 88986.63616103255 0.9351689688977123 0.8753465409440353 0.8562604040413753 1.1809552868771651 1.1921363605396045 0.9459292663628989 0.7379632561772992 0.9175536568307445 0.9338814822251033 1.0 16.44130107077629 2.4768016085123032 24.999999455635194 0.882184589411704 1.0085115300930736 0.15118210737950022 0.1217995000814073 20.79190465649318 1625905.851424848 0.04569483482931073 0.038585866656874454 299.7792774596194 -2.4768016085123032 0.12632694068136963 SSS(ph)SPELQTLQDILGDPGDKADVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 S(0.31)S(0.31)S(0.354)S(0.025)PELQTLQDILGDPGDKADVGR;S(0.102)S(0.102)S(0.397)S(0.397)PELQT(0.001)LQDILGDPGDKADVGR;S(0.214)S(0.214)S(0.562)S(0.007)PELQT(0.003)LQDILGDPGDKADVGR;S(0.012)S(0.047)S(0.936)S(0.005)PELQTLQDILGDPGDKADVGR 129.48 6.1013e-05 673617000.0 167454.0 156885.0 143098.0 145223.0 147527.0 181600.0 186535.0 166605.0 240512.0 192530.0 True False 166552.44626988829 162106.8223860147 163244.9545698868 163608.21690995048 166313.6889889639 169046.4194404183 177511.58941710062 179037.91110304816 181241.04029568465 180242.57056677426 0.9240461104508371 0.8993814384485778 0.9056958855866385 0.9077112937053832 0.9227214662218205 0.9378828703388463 0.9848483011472482 0.9933164542652824 1.0055395888206138 1.0 17.459580268563826 2.329325974225596 1.4087129526183082 1.0019732317604477 0.9084476594527676 0.9703007298241053 0.007004041871455155 0.05977356571209929 0.23643111287507187 0.003750361473296789 0.002409770269198562 213.4646542236869 -2.329325974225596 -0.0935255723076801 SSS(ph)SSNASGNGGDGKEERPEGSPTLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSSNASGNGGDGKEERPEGSPTLFK 27 2 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 S(0.119)S(0.119)S(0.721)S(0.02)S(0.02)NAS(0.001)GNGGDGKEERPEGSPTLFK;S(0.126)S(0.126)S(0.679)S(0.021)S(0.021)NAS(0.028)GNGGDGKEERPEGSPTLFK 145.86 8.039899999999999e-08 391430000.0 259440.0 229930.0 233100.0 238200.0 205498.0 295580.0 284010.0 262100.0 401290.0 273540.0 True False 258043.20386649357 237583.0810543798 265918.4538584788 268356.0955768038 231666.95221792677 275147.25032047764 270271.35127643985 281659.23291683244 302397.4565105083 256082.44301062357 1.0076567562883982 0.9277601317030691 1.0384095478480233 1.04792852029169 0.9046576934144449 1.0744479281192392 1.0554075792897197 1.0998771708263804 1.1808597768569529 1.0 17.966248819719805 2.556699686667125 9.762552729296367 1.0885186207949242 0.988459744859408 0.4026268594575091 0.05890322103763643 0.48445169126647475 57.134875179245576 0.018658828914020167 0.017575706074551098 360.3293901592007 -2.556699686667125 -0.10005887593551621 SSS(ph)STEQSLMMGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSSTEQSLMMGLR 14 0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 1 SSS(0.998)S(0.002)TEQSLMMGLR;SSS(0.866)S(0.101)T(0.033)EQSLMMGLR;SS(0.004)S(0.818)S(0.167)T(0.011)EQSLMMGLR 230.55 9.1211e-13 373790000.0 608578.0 464043.0 500136.0 606076.0 394873.0 527559.0 520387.0 460765.0 737170.0 638040.0 True False 605301.4836673724 479488.3907350831 570550.8015399579 682805.1594576284 445157.7359543614 491090.0880703054 495213.8927386107 495149.6240172618 555504.3310719207 597319.7409464737 1.013362596568885 0.8027332061306349 0.9551849075603972 1.1431150063376445 0.7452587039045346 0.8221561324796604 0.8290599804284506 0.828952385254638 0.9299949306743236 1.0 19.188143876937882 3.2110162868028973 24.999974557736202 0.84565429734215 0.9643649984340512 0.2391532708215094 0.10133275812060745 306.1626108860002 277880.628154862 0.029012209330539326 0.03468384044771552 1625.609717815911 -3.2110162868028973 0.11871070109190118 SSS(ph)TEPPPPVR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSTEPPPPVR 11 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;J3QT54;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 SSS(0.995)T(0.005)EPPPPVR;SSS(0.999)T(0.001)EPPPPVR;S(0.006)S(0.082)S(0.897)T(0.015)EPPPPVR 202.12 4.3107e-08 1135290000.0 990690.0 1041870.0 937440.0 890870.0 874030.0 1032250.0 1048670.0 996380.0 1224030.0 1109940.0 True False 985356.2351160063 1076548.0131262853 1069423.4036254506 1003654.0506570409 985332.5397183155 960892.9871551298 997941.825791572 1070734.9351151208 922384.2076616833 1039102.6789325585 0.9482760992669518 1.0360362213984409 1.02917971949032 0.9658853460834756 0.9482532955554694 0.9247334326403899 0.9603880790844751 1.0304418964784667 0.887673784663151 1.0 19.986906790522617 3.6725838533524993 8.4806169982028 0.9630642542583447 1.0075977046607028 0.18548169010791726 0.042525015660883625 0.6086143288572837 73.4939407871795 0.011480545395187485 0.0178291955989909 4705.262459186407 -3.6725838533524993 0.04453345040235801 SSS(ph)TGNLLDKDDLAIPPPDYGAASR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSTGNLLDKDDLAIPPPDYGAASR 25 1 Q9UQB8;Q9UQB8-2;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;Q9UQB8-6;B4DWA1;I3L3C6 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 S(0.114)S(0.114)S(0.766)T(0.006)GNLLDKDDLAIPPPDYGAASR;S(0.138)S(0.138)S(0.586)T(0.138)GNLLDKDDLAIPPPDYGAASR 165.53 9.2021e-12 2639860000.0 1215320.0 787900.0 712440.0 778530.0 577250.0 779290.0 785840.0 878610.0 1309310.0 951440.0 True False 1208776.8521547467 814124.7752043925 812745.3593605085 877091.8181755213 650759.3658711916 725419.51655134 747825.9169996746 944176.3396911806 986648.0943551377 890718.2846312346 1.357080990714355 0.9140092768404855 0.9124606212580361 0.9847017101918428 0.73060065915298 0.8144208208902664 0.8395762497558713 1.0600167931683115 1.1076993830474906 1.0 19.76460968437571 4.739434871947137 24.722738195863247 0.924766072364708 1.3570811479680374 0.5815035970029055 0.1088165897700397 48.107932802778606 1360172.4821838364 0.02804122851876228 0.16981528555229047 54882.624586903825 -4.739434871947137 0.4323150756033294 SSS(ph)TSDILEPFTVER ddPTM_BT-474_Trastuzumab_2h_R1 6 SSSTSDILEPFTVER 15 0 Q6GYQ0-2;A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-3 Q6GYQ0-2 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 SS(0.001)S(0.999)TSDILEPFTVER;S(0.011)S(0.014)S(0.96)T(0.014)SDILEPFTVER;SSS(0.876)T(0.116)S(0.008)DILEPFTVER;SSS(0.675)T(0.325)S(0.001)DILEPFTVER;SSS(0.991)T(0.009)SDILEPFTVER;SSS(0.951)T(0.049)SDILEPFTVER 299.17 3.5101999999999997e-44 4445670000.0 5631860.0 6002180.0 5150990.0 5688870.0 5241300.0 5886140.0 5810870.0 5343090.0 6423830.0 6147230.0 True False 5601538.6915184725 6201958.932905564 5876204.618792307 6409080.358707026 5908748.487380994 5479244.996283166 5529776.018420926 5741818.507461262 4840763.171411942 5754908.518491619 0.9733497367542264 1.0776815848553434 1.0210769814864893 1.1136719789920948 1.0267319573187057 0.952099408474923 0.9608799167967137 0.9977254180516864 0.8411538004223084 1.0 22.45636156441192 2.813390240236859 4.266928371666584 0.9548860855602938 1.0490528991110935 0.42740125901658577 0.05337838582595862 0.21876234063700792 7.597886147158369 0.016136436995988726 0.017011684329007532 650.7141342967219 -2.813390240236859 0.0941668135507997 SSS(ph)VEEKPLSHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSVEEKPLSHR 12 1 Q06190 Q06190 PPP2R3A Serine/threonine-protein phosphatase 2A regulatory subunit B subunit alpha 1 SS(0.018)S(0.981)VEEKPLSHR;S(0.001)S(0.004)S(0.995)VEEKPLSHR;S(0.016)S(0.118)S(0.866)VEEKPLSHR 135.47 7.703899999999999e-05 994220000.0 1115290.0 995070.0 862060.0 919740.0 841290.0 1082780.0 1077080.0 1080690.0 1399120.0 1169390.0 True False 1109285.4025603675 1028190.3034174832 983430.5548401562 1036178.9896969331 948423.2947834987 1007929.9671899559 1024977.5255548335 1161336.5754326282 1054325.623247482 1094758.5290348511 1.0132694773689714 0.9391936907985955 0.8983081919509295 0.9464909038986321 0.8663310397952663 0.9206870195188668 0.9362589999261872 1.0608152799288741 0.9630668273276528 1.0 20.062181258894004 1.8554933947835224 7.7025121891950405 1.0125087625467828 0.9276727137008403 0.4109889719534583 0.0417592579033965 0.2373382983408681 14.161006733243406 0.017786488720158512 0.011050040193078172 71.69574712389816 -1.8554933947835224 -0.08483604884594254 SSS(ph)VGS(ph)SSSYPISPAVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSVGSSSSYPISPAVSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 2 SS(0.002)S(0.997)VGS(0.993)S(0.007)SSYPISPAVSR;SSS(1)VGS(0.647)S(0.251)S(0.099)S(0.003)YPISPAVSR 464.61 3.742699999999997e-214 914940000.0 1057100.0 646300.0 567360.0 761980.0 728070.0 848220.0 655160.0 623920.0 995290.0 858940.0 True False 1051408.6910548517 667811.7048034 647239.3564184755 858446.589872431 820785.3988910151 789584.547895107 623467.4078457529 670480.078601564 750014.1157027184 804121.7138244695 1.3075243125251088 0.830485849744353 0.8049022247392768 1.0675580264952527 1.0207228393165653 0.9819216846412187 0.7753395998728728 0.8338042202749447 0.9327121787765053 1.0 19.6170543622104 2.3403882776304226 9.237208530283182 0.8642934609487499 0.989834828809269 0.1308643125973119 0.14123439369358126 0.5427192800757623 44.78089177516498 0.04862794704724649 0.04063725323518497 218.9718449960393 -2.3403882776304226 0.12554136786051906 SSS(ph)VGSS(ph)SSYPISPAVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 2 SSS(1)VGS(0.033)S(0.967)SSYPISPAVSR 384.36 2.828199999999998e-126 569660000.0 486280.0 352300.0 285570.0 360640.0 367950.0 394030.0 327200.0 333780.0 482220.0 407500.0 True False 483661.9225107868 364026.0925301524 325775.77378106327 406296.98702274816 414806.2514894853 366791.63354685024 311372.08597461745 358688.35850049695 363383.3424169482 381493.0011216974 1.2678133572272199 0.954214340655825 0.8539495425163509 1.0650181938544612 1.0873233591962042 0.9614635982006983 0.8161934427606676 0.9402226448345098 0.9525295125952462 1.0 18.54129706402705 2.484607714661708 24.674787037806556 0.9164466985385911 1.0303462795094638 0.20686549116040043 0.1080047025648258 495.38902391955173 1632772.0155098569 0.03692609341192682 0.03214479765270783 305.2162939360581 -2.484607714661708 0.11389958097087272 SSS(ph)VGSSSSYPIS(ph)PAVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSVGSSSSYPISPAVSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 2 SSS(1)VGSSSSYPIS(1)PAVSR;S(0.002)S(0.004)S(0.994)VGSSSSYPIS(1)PAVSR;SS(0.038)S(0.961)VGSSSSYPIS(1)PAVSR;S(0.002)S(0.004)S(0.994)VGSSSSYPIS(1)PAVSR 392.2 1.519099999999999e-126 3665310000.0 2790010.0 3142480.0 2855980.0 3003340.0 2926010.0 3106240.0 2996730.0 2839550.0 3429210.0 3177300.0 True False 2774988.896159255 3247075.547130724 3258077.1593768257 3383562.5360606145 3298620.0296799806 2891512.940102451 2851766.7212796914 3051451.6399427373 2584127.1445597964 2974521.993776615 0.9329192730681336 1.0916293622721076 1.0953279774677993 1.137514714343954 1.1089580230307436 0.9720933131952503 0.9587310926751406 1.0258628600921684 0.868753752692495 1.0 21.504226415016745 2.7277336374351817 23.610559373938187 0.9710598091735003 1.0790844491140033 0.4162026841554787 0.06368085882512298 344.6861640876809 751660.2264060068 0.020527925331621226 0.01955290084046534 534.2365995846171 -2.7277336374351817 0.10802463994050293 SSS(ph)VGSSSSYPISPAVSR ddPTM_BT-474_Trastuzumab_2h_R1 12 SSSVGSSSSYPISPAVSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 S(0.056)S(0.056)S(0.888)VGSSSSYPISPAVSR;S(0.001)S(0.012)S(0.987)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(0.999)VGS(0.001)SSSYPISPAVSR;SSS(0.999)VGS(0.001)SSSYPISPAVSR;SSS(0.993)VGS(0.006)SSSYPISPAVSR;S(0.004)S(0.024)S(0.971)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;S(0.118)S(0.118)S(0.763)VGSSSSYPISPAVSR;SSS(0.999)VGS(0.001)SSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR 488.55 6.031699999999995e-240 116631775000.0 18169065.0 19651911.0 18413774.0 19012406.0 19302781.0 21338003.0 21055688.0 19056752.0 23086644.0 20188636.0 True False 18071244.772812888 20306012.97780392 21006273.3238072 21419374.65021409 21760875.743803382 19862957.076866187 20037143.930900753 20478863.60246588 17397249.931380246 18900179.96611911 0.9561414126853718 1.0743819907643704 1.111432449927118 1.13328945484175 1.1513581237222301 1.0509401028176966 1.0601562507245852 1.0835274393776542 0.9204806495264568 1.0 24.17189663595902 1.2497510825936622 24.86776242931734 0.9602403322714794 1.081269058404202 0.4328401051589278 0.05363315718872939 159.50931980592503 354471.60809705144 0.037163525843509675 0.013292100093520802 17.772604749856793 -1.2497510825936622 0.12102872613272253 SSS(ph)VTSIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSVTSIDK 9 0 H0Y332;Q5T5C0-2;Q5T5C0;Q5T5C0-3;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 S(0.001)S(0.022)S(0.976)VT(0.001)SIDK 90.05 0.012265 121090000.0 235380.0 226420.0 219600.0 194450.0 219850.0 243560.0 225830.0 238320.0 313640.0 230630.0 True False 234112.74023317648 233956.2528262194 250517.7712025826 219067.3500625924 247846.5943469579 226723.2704785696 214905.74014562299 256104.64856443898 236347.6245606812 215910.995947723 1.0843020718123155 1.0835772944276798 1.160282597479374 1.0146187742824995 1.1479109401494645 1.0500774612399293 0.9953441194706758 1.186158432738867 1.094653023683455 1.0 17.720077193458582 3.759495534216298 24.96508264824762 1.081641868525184 1.1068062959141292 0.05545952714699309 0.06244312594096806 3625.1012817281244 4322957.383210274 0.01606182834599885 0.028930911993568394 5747.719085235498 -3.759495534216298 0.025164427388945088 SSSASS(ph)PEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SSSAS(0.024)S(0.976)PEMK;SSSAS(0.214)S(0.786)PEMK 179.6 2.1908000000000003e-06 780310000.0 1055220.0 850410.0 777340.0 731870.0 782440.0 868590.0 1032560.0 934300.0 1372130.0 1032530.0 True False 1049538.8127659631 878715.3827663 886782.7152395969 824524.6669596774 882079.0961147777 808546.4177409303 982611.128037749 1004022.2102792707 1033986.9471000107 966633.0514065927 1.085767563232739 0.9090475247951023 0.917393331367263 0.8529862141170046 0.9125273492678772 0.8364564159733384 1.0165296195985702 1.03867978527971 1.069678866862051 1.0 19.88260879910642 2.091708806715103 7.612685778681061 1.03722718649539 0.9154003715934649 0.42175207592331176 0.06455141184279534 0.21458263082233003 15.406698202261243 0.024261380584834256 0.017882390518812106 123.51190117647451 -2.091708806715103 -0.12182681490192504 SSSFS(ph)DTLEESSPIAAIFDTENLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSFSDTLEESSPIAAIFDTENLEK 25 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 S(0.194)S(0.194)S(0.194)FS(0.366)DT(0.051)LEESSPIAAIFDTENLEK 269.14 3.6694e-46 1303400000.0 581900.0 475460.0 373280.0 406140.0 386450.0 584210.0 575680.0 524160.0 699970.0 575250.0 True False 578767.1150551678 491285.39867836045 425834.5793920766 457557.28235752735 435662.11683139397 543824.9377824159 547832.1590888388 563275.4808305487 527471.7726174601 538537.0525036971 1.0747024970045018 0.9122592334071344 0.7907247559148276 0.8496300862314133 0.8089733376858097 1.0098189813572438 1.017259920263477 1.0459363533332402 0.9794530760050888 1.0 19.0386860831327 2.6717397075089493 9.006977575889188 1.0168489198312756 0.8812658484707244 0.40435782919050167 0.07441448765513324 0.4218311235616023 54.29522553691433 0.025206764659670488 0.023764519155165264 469.6125640138788 -2.6717397075089493 -0.13558307136055114 SSSFSDT(ph)LEESSPIAAIFDTENLEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSFSDTLEESSPIAAIFDTENLEK 25 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 1 S(0.167)S(0.167)S(0.167)FS(0.217)DT(0.282)LEESSPIAAIFDTENLEK;S(0.188)S(0.188)S(0.188)FS(0.188)DT(0.249)LEESSPIAAIFDTENLEK;S(0.191)S(0.191)S(0.191)FS(0.191)DT(0.236)LEESSPIAAIFDTENLEK;S(0.192)S(0.192)S(0.192)FS(0.192)DT(0.231)LEESSPIAAIFDTENLEK;S(0.164)S(0.164)S(0.164)FS(0.164)DT(0.228)LEES(0.053)S(0.062)PIAAIFDTENLEK 201.32 2.2943e-24 2525478200.0 479135.0 385409.8 367401.8 345158.5 352897.8 513585.7 476879.9 408722.7 576565.4 518273.5 True False 476555.3903969028 398237.9322078565 419128.77992630703 388855.5307101014 397837.2430408636 478082.7294096959 453811.3973788721 439223.66332581715 434478.58275053906 485196.8415137335 0.9821898034416902 0.8207760194098138 0.8638324573974862 0.8014387098995468 0.8199501913484794 0.9853376784526404 0.935313997434641 0.9052483976513787 0.8954686955402226 1.0 18.888210633412744 2.746060255957429 24.988864155561185 0.9350110170141257 0.8528115957675652 0.3715886097469765 0.05550797126236416 665.3071888012229 2216810.1219776357 0.01694763390516908 0.017644278502010596 557.2630607361579 -2.746060255957429 -0.08219942124656054 SSSGLLEWESK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSGLLEWESK 11 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0;M0R076 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;; 208.6 4.421e-08 516700000.0 1282110.0 1219410.0 1109940.0 1084270.0 1120820.0 1355830.0 1380680.0 1287320.0 1726580.0 1432190.0 False True 1275207.2622158125 1259997.3247010896 1266209.9042285732 1221538.4708272922 1263549.7833793845 1262104.663380519 1313891.2336902057 1383386.3552785066 1301087.4939866748 1340786.4080404507 0.95108904339172 0.9397450012508453 0.9443785353396664 0.9110611977433166 0.9423945348805058 0.9413167196593792 0.9799407465730862 1.0317723591040242 0.9703913212308025 1.0 20.354647998509854 2.1277207534120466 3.470701078804751 1.00462849096085 0.9373258183696489 0.7319058931668605 0.017196150851847055 0.1087291104418178 2.5502014202872263 0.006969341346628148 0.004837678822408536 134.19018555105177 -2.1277207534120466 -0.06730267259120115 SSSHSSPGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSHSSPGSPK 11 0 Q6NZY4;Q6NZY4-2;F5GX80 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 SSSHSSPGS(1)PK;SSSHSSPGS(1)PK 117.08 0.00058141 823820000.0 526980.0 904760.0 1037530.0 1070960.0 1124270.0 812750.0 1295800.0 1339460.0 1183780.0 1343820.0 True False 524142.7982329821 934874.3896610301 1183605.2056275737 1206543.4261919968 1267439.1204296327 756566.5055077089 1233117.2035632923 1439417.306840064 892053.2808393163 1258056.2570978154 0.4166290619166082 0.7431101625118681 0.9408205705824385 0.9590536348313607 1.007458222379866 0.6013773241373298 0.980176519616019 1.1441597295184769 0.7090726474324575 1.0 20.26276500666167 4.651736741007 2.136966340061818 0.9315671222453425 0.32968184288256047 0.5162018215397637 0.14784766852818987 0.43149033302790507 2.5613174139728168 0.03865804372501574 0.4633368853781627 44847.345357214755 -4.651736741007 -0.601885279362782 SSSHSSPGS(ph)PKK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSHSSPGSPKK 12 1 Q6NZY4;Q6NZY4-2;F5GX80 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 SSSHS(0.001)S(0.028)PGS(0.971)PKK;SSSHS(0.002)S(0.459)PGS(0.539)PKK;SSSHS(0.001)S(0.01)PGS(0.99)PKK 133.66 7.489e-05 383163000.0 231279.0 355766.0 467461.0 518691.0 495462.0 509234.0 653214.0 638311.0 663209.0 672256.0 True False 230033.81956151282 367607.45624491153 533275.4455561494 584357.2274174133 558556.1488666482 474031.85218789615 621615.543300195 685945.008097582 499770.0284952961 629352.046532682 0.3655089720115294 0.5841046490119292 0.8473404487903838 0.9285061209172819 0.8875098634284692 0.7532061821352636 0.9877071930168336 1.0899225828797892 0.7941024919974471 1.0 19.26350773113941 4.465605922556476 1.4691334444786628 0.9340274170617502 0.27575479123146845 0.7928976598869755 0.09300445888718423 0.31938812578105 0.9254414525079322 0.02791673123671094 0.2660568840172767 29215.00214659927 -4.465605922556476 -0.6582726258302818 down SSSISEEKGDS(ph)DDEKPR ddPTM_BT-474_Trastuzumab_2h_R1 8 SSSISEEKGDSDDEKPR 17 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR 262.94 1.1813999999999999e-27 34425740000.0 19466830.0 10427080.0 9218400.0 8467040.0 9203310.0 15148800.0 16053320.0 14932060.0 26741750.0 13491410.0 True False 19362022.750248134 10774139.054497046 10516270.592230821 9538966.395854829 10375296.976207877 14101599.112439446 15276759.58196224 16046366.140664306 20151604.033591393 12630376.663222788 1.5329727106735143 0.8530338676176819 0.832617337759385 0.7552400573793221 0.8214558641325981 1.116482864165134 1.2095252571877138 1.2704582427369897 1.5954871791170697 1.0 23.590394328044898 2.3355477631172397 2.268600001852363 1.3010280698420813 0.9367566827225356 0.2547173377262696 0.2461854908701666 0.37856987989040103 3.9972178677546544 0.1042258251273765 0.07752565577958327 216.54480192444734 -2.3355477631172397 -0.36427138711954565 SSSLDGEHHDGYHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLDGEHHDGYHR 14 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 0 41.092 0.082607 12731000.0 10163.0 13454.0 12729.0 12969.0 10145.0 14333.0 15994.0 6201.5 13993.0 9319.6 False True 10108.28353721545 13901.808256885262 14521.132557548592 14610.874070258478 11436.90561587396 13342.193446252819 15220.309116986664 6664.287420578926 10544.612646593583 8724.815149089021 1.1585670715637888 1.593364216815159 1.664348448581719 1.674634226695798 1.3108478999773554 1.5292236245997612 1.7444849956019817 0.763831359942882 1.2085771980733107 1.0 13.090908850217312 1.740055155586557 14.846595203243842 0.9922879733727126 1.5307169625981996 0.6155922534173706 0.19342353733939335 0.04011517674095566 112.30192900367841 0.08730009927069905 0.04815326822686448 54.961067021766745 -1.740055155586557 0.538428989225487 SSSLEMTPYNTPQLS(ph)PATTPANKK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLEMTPYNTPQLSPATTPANKK 24 1 Q14C86-2;Q14C86-6;Q14C86-3;Q14C86-4;Q14C86-5;Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7;B4DGD8;B0QZ65;A0A0A0MQV8 Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 SSSLEMT(0.001)PY(0.006)NT(0.025)PQLS(0.959)PAT(0.007)T(0.002)PANKK 92.632 0.0052036 252160000.0 135560.0 139320.0 139130.0 122380.0 133670.0 158960.0 161850.0 167990.0 266730.0 209390.0 True False 134830.1600221318 143957.1819792816 158718.29466036128 137873.29545209595 150692.08217583777 147971.4693515908 154020.69717295817 180526.2668359354 200997.96549888563 196026.55093220194 0.687815805465885 0.7343759368039428 0.8096775355459672 0.703339903683665 0.7687330183550308 0.7548542207569037 0.7857134476963176 0.9209276293310518 1.0253609245433448 1.0 17.580689548695595 1.6365541437348363 1.930729468163179 1.0162673455464155 0.7446355458846117 0.9182065239996208 0.03277354003334507 0.07649446012157646 0.5981597517552576 0.02454012008989237 0.0091474308554834 43.306605495879104 -1.6365541437348363 -0.27163179966180384 SSSLIQLTSQNS(ph)SPNQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLIQLTSQNSSPNQQR 18 0 O95639;H7C419 O95639 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSSLIQLTSQNS(0.5)S(0.5)PNQQR 205.65 9.857499999999999e-16 240830000.0 100220.0 121040.0 115570.0 104110.0 119930.0 152250.0 142200.0 117890.0 138050.0 134520.0 True False 99680.42665548867 125068.74322977502 131841.25144755226 117290.31532536121 135202.37461919794 141725.31585794952 135321.2427432476 126687.55043329015 104029.4272752265 125934.81843163367 0.7915239637209804 0.993122829630085 1.0469007149053462 0.9313573226695419 1.0735901024274344 1.1253862722237382 1.0745339885228766 1.0059771555716748 0.826057706445188 1.0 16.942317688660467 4.733709069397296 3.969027583721026 1.0171864599052498 0.7718763542096476 0.40002274089563583 0.0796256317052081 0.23199967749179803 7.608634967338671 0.019585880708252207 0.16329344031350038 54163.79296729193 -4.733709069397296 -0.2453101056956022 SSSLIQLTSQNSS(ph)PNQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSLIQLTSQNSSPNQQR 18 0 O95639;H7C419 O95639 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSSLIQLTSQNS(0.027)S(0.973)PNQQR 273.77 5.3569999999999996e-39 289990000.0 188530.0 195570.0 206200.0 207970.0 202250.0 247710.0 240300.0 223720.0 255720.0 275780.0 True False 187514.97542765195 202079.42922543833 235231.16767747066 234298.98067635542 228005.33867033102 230586.39074661888 228675.77096485504 240415.12242714118 192701.2324724441 258179.484292863 0.72629696329762 0.7827090900693403 0.9111148715853767 0.9075042554914279 0.8831272527126739 0.8931243757736219 0.8857240209894418 0.9311937510667152 0.7463847601998291 1.0 17.97801483881203 4.3706543597295795 3.7474566242560496 0.8938304544334162 0.736579304260115 0.47974393753201217 0.0595397862895514 0.1691807858348866 4.358932870423054 0.013660981370620134 0.04445767350639272 23477.63571593124 -4.3706543597295795 -0.15725115017330127 SSSPAGET(ph)EGDREPQARPGEGTAPLPPPGQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 S(0.117)S(0.117)S(0.117)PAGET(0.648)EGDREPQARPGEGT(0.002)APLPPPGQK 82.05799999999998 0.0017992999999999996 778940000.0 113420.0 112240.0 104170.0 103690.0 106670.0 126560.0 123150.0 122500.0 182560.0 127730.0 True False 112809.35932214666 115975.84054948729 118836.2305381285 116817.14336842486 120253.79221737557 117811.20509019458 117192.76402131474 131641.57204239597 137570.53417866956 119578.16204484513 0.9433943237883187 0.9698747544388007 0.9937954264053801 0.9769103435844347 1.005650113373352 0.9852234143389167 0.9800515580542558 1.1008830524843385 1.1504653678075165 1.0 16.867594415927044 1.74053925178164 5.922227240898404 1.0937456651819033 0.9804185405227838 0.6095332656663002 0.03801979353236406 0.08794321220373544 8.091950731667895 0.01796169562596088 0.009362550318828815 55.02236477889082 -1.74053925178164 -0.11332712465911954 SSSPALKPKPNPPS(ph)PENTASSAPVDWR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSSPALKPKPNPPSPENTASSAPVDWR 27 2 Q5T0Z8 Q5T0Z8 C6orf132 Uncharacterized protein C6orf132 1 SSSPALKPKPNPPS(1)PENTASSAPVDWR;SSSPALKPKPNPPS(1)PENTASSAPVDWR;SSSPALKPKPNPPS(1)PENTASSAPVDWR;SSSPALKPKPNPPS(1)PENTASSAPVDWR 252.96 4.4738e-53 3211270000.0 2877430.0 2202070.0 2304800.0 2024160.0 2257270.0 3041530.0 2763250.0 2745640.0 3195240.0 2817870.0 True False 2861938.236592525 2275364.5687705753 2629295.806319269 2280418.4484582 2544719.954612501 2831276.190091495 2629581.0408599083 2950533.5988774183 2407815.916022419 2638031.124100121 1.0848765999941652 0.862523776912125 0.9966886979834887 0.8644395540390338 0.9646284804469658 1.073253520106702 0.9967968220075132 1.118460495754726 0.9127321865255731 1.0 21.331030155263143 2.893682604058916 6.206612891610406 1.0326189648149273 0.944922693390746 0.13876095298125768 0.07830165152476026 0.3467197382767591 17.32694372761514 0.02250492284941663 0.023979371669662356 782.8572971391234 -2.893682604058916 -0.08769627142418135 SSSPELVTHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 ; 179.42 7.1107e-06 1160190000.0 1569560.0 1583700.0 1477920.0 1370010.0 1376390.0 1878750.0 1697880.0 1688180.0 2183200.0 1825000.0 False True 1561109.6633545088 1636412.4971331332 1685998.2896890757 1543453.1255297111 1551665.1079973169 1748876.4346017914 1615747.0578685342 1814160.5640043442 1645179.6133812002 1708526.9375388904 0.9137167398737451 0.9577914524955415 0.9868139931804254 0.9033823767233277 0.9081888461369354 1.0236165413470295 0.9456959807704265 1.061827311085664 0.9629228414455431 1.0 20.70432156356335 2.7344659065802746 24.994973498929035 1.0030722382329489 0.93653711341319 0.4225725842747148 0.037670702578191745 345.783967637197 2110729.881660936 0.011977992227984466 0.011691847622255586 542.582655290874 -2.7344659065802746 -0.06653512481975887 SSSPT(ph)SSLTQPIEMPTLSSS(ph)PTEERPTVGPGQQDNPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 S(0.02)S(0.02)S(0.209)PT(0.249)S(0.249)S(0.249)LT(0.004)QPIEMPTLS(0.014)S(0.103)S(0.779)PT(0.103)EERPTVGPGQQDNPLLK 226.74 1.1303999999999999e-38 221120000.0 148890.0 118440.0 115560.0 109350.0 120830.0 158800.0 160400.0 149670.0 190300.0 151960.0 True False 148088.392783234 122382.20380150799 131829.84353447377 123193.69878809189 136216.9842844801 147822.5297749914 152640.83921249592 160839.1354088605 143403.11488935596 142261.7827004986 1.0409569595722141 0.8602605807292408 0.9266708249538317 0.865964818165182 0.9575093303255977 1.0390881301283827 1.0729574472846877 1.1305856875663685 1.0080227603449916 1.0 17.118188621798907 2.7486622829434637 2.729277015186345 1.0697846635050872 0.9186200003108836 0.5097007319937494 0.05831574597584716 0.18879213719165783 2.8098374497873224 0.019246081376422516 0.01932545888954894 560.6118622252412 -2.7486622829434637 -0.15116466319420352 SSSPTSSLT(ph)QPIEMPTLSSS(ph)PTEERPTVGPGQQDNPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 S(0.139)S(0.139)S(0.139)PT(0.139)S(0.139)S(0.139)LT(0.166)QPIEMPT(0.007)LS(0.052)S(0.052)S(0.445)PT(0.445)EERPT(0.001)VGPGQQDNPLLK 111.81 0.00013059 184690000.0 30403.0 20799.0 27204.0 22159.0 28046.0 35352.0 40195.0 32060.0 40645.0 35957.0 True False 30239.31362609086 21491.282141739 31034.086738593145 24964.32712798655 31617.49185833427 32908.19944965675 38250.61429018872 34452.47999738134 30628.584365096576 33662.1934756635 0.8983167911488817 0.6384397427124405 0.9219270503281262 0.7416132031335041 0.9392582180122198 0.9776011617736122 1.1363078379857354 1.0234769763975478 0.909880824826222 1.0 15.038841567309339 3.0018745078946143 2.61829068311833 1.0228148683578686 0.7967355565917994 0.5321370977884687 0.09157554786135207 0.1977953996614123 2.7368838484776807 0.028018721051586204 0.03259881641830481 1004.3255422023082 -3.0018745078946143 -0.2260793117660692 SSSQRS(ph)PS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 2 S(0.309)S(0.328)S(0.331)QRS(0.559)PS(0.463)PGPNHT(0.004)S(0.004)NS(0.002)S(0.001)NASNATVVPQNSSAR;S(0.221)S(0.245)S(0.254)QRS(0.548)PS(0.632)PGPNHT(0.037)S(0.036)NS(0.014)S(0.013)NASNATVVPQNSSAR 116.85 3.7446e-06 539570000.0 44258.0 107418.0 130990.0 173160.0 159152.0 151430.0 159539.0 142019.0 107094.0 153022.0 True False 44019.71984552607 110993.34319444765 149432.2534145093 195082.03824550533 179419.06383219067 140962.00052787742 151821.48907183518 152617.17893786952 80702.11868607828 143256.00495127472 0.30728010222327773 0.7747901613771758 1.0431133652326496 1.3617721526707245 1.2524366004288336 0.9839866787840582 1.05979144904588 1.0653457702508093 0.5633419605239395 1.0 17.128236089033997 4.614374103828121 2.291082745785611 1.0610083785589213 0.2247116327032926 0.5665287630642084 0.1965501412945939 0.32391054528086277 2.430280354087399 0.05105212834051561 0.486550088723008 41150.40404836787 -4.614374103828121 -0.8362967458556286 SSSRPCS(ph)PVHHHEGHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSRPCSPVHHHEGHAK 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 S(0.016)S(0.016)S(0.031)RPCS(0.937)PVHHHEGHAK;S(0.084)S(0.084)S(0.071)RPCS(0.761)PVHHHEGHAK 69.98 0.012018 301670000.0 66019.0 81204.0 67871.0 79310.0 91555.0 85748.0 79540.0 6661.2 85176.0 26880.0 True False 65663.56103940049 83906.82605114543 77426.64685469255 89350.63786816239 103213.9865609995 79820.44258908032 75692.34632769282 7158.292568888222 64185.51609992528 25164.495386874205 2.609373247104752 3.334333741296128 3.0768209600212475 3.5506628086318655 4.101571876336368 3.171946878406894 3.0079024102813494 0.2844600083903127 2.55063791715865 1.0 14.619102047912646 1.87372424338398 6.3632600318257735 1.2589181952005548 3.3230720332218433 0.678816260666723 0.6284209722437788 0.12650395885341928 5.946327582654948 0.2654302720676103 0.16154932259026916 74.76945987735382 -1.87372424338398 2.0641538380212885 SSSRPCSPVHHHEGHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSRPCSPVHHHEGHAK 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 0 55.437 0.039971 18299000.0 5062.6 6478.4 6000.9 6348.4 6044.8 8742.6 6462.4 527.88 8181.1 3049.4 False True 5035.34352410774 6694.029627724501 6845.774559242157 7152.106789083879 6814.569449663373 8138.244639866735 6149.789023234623 567.2730861203261 6164.977526123551 2854.7846812773114 1.7638260276269893 2.3448457152044835 2.398000312997043 2.505305158735763 2.387069502773968 2.8507385139202355 2.154204155419187 0.19870958739575134 2.159524522656877 1.0 11.479166220804343 1.91591771899601 8.169185725853751 1.0581262752801026 2.3909123685001745 0.5520668956539267 0.5075155096892763 0.21109367312042535 18.705081356933064 0.20341552547410693 0.12770670986610422 82.398198940914 -1.91591771899601 1.332786093220072 SSSS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSSPPPK 8 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.001)SS(0.255)S(0.744)PPPK 61.56 0.097685 0.0 681100.0 606050.0 514400.0 522270.0 578520.0 423330.0 620270.0 623590.0 825170.0 751300.0 True False 677433.0332773235 626222.0078850383 586823.0487550476 588389.32845045 652191.0928433122 394066.19351163163 590265.1704384966 670125.4523258593 621817.9102115086 703351.3907797096 0.9631502008211658 0.8903401857083577 0.8343241464334308 0.8365510272158319 0.9272621073803765 0.560269303050335 0.8392180326595364 0.952760542042837 0.8840785962222725 1.0 19.423886106948636 1.7653629802470658 6.772318574534793 0.9379994216015773 0.8306328540593965 0.1838499744605615 0.10519003465531519 0.306921650479049 38.337663258050235 0.05167105394452453 0.028192193488378717 58.25899388815046 -1.7653629802470658 -0.10736656754218088 SSSSESSHSSSSHSHGKT(ph)TPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSESSHSSSSHSHGKTTPTK 22 1 O75582-3;O75582 O75582-3 RPS6KA5 Ribosomal protein S6 kinase alpha-5 1 SSSSESSHSSSSHS(0.002)HGKT(0.455)T(0.455)PT(0.087)K;SSSSESSHSSSSHS(0.002)HGKT(0.449)T(0.449)PT(0.098)K 85.97399999999998 0.0016946 29918000.0 4006.2 10384.2 23392.8 23180.4 25651.8 25708.8 32804.0 4271.5 19728.6 21065.3 True False 3984.631064330661 10729.831819618546 26686.302906137385 26115.03626326003 28918.40467986947 23931.611168005616 31217.14519655061 4590.261020237503 14866.750879696012 19720.894519089314 0.2020512335519893 0.5440844384230313 1.3531994139670356 1.3242318312681685 1.4663840249171864 1.2135154997579058 1.5829477291881067 0.23276129872274554 0.7538578366871433 1.0 14.267437371883195 1.7321744646688337 24.999999999256982 0.6099856773861777 1.1138749130518972 0.167966376973413 0.43896912665663107 1.0491566488106392 4078.4108224139077 0.21530925885204744 0.11939982447421407 53.97273981238186 -1.7321744646688337 0.5038892356657195 SSSSGHYVSWVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSGHYVSWVK 12 0 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ; 164.04 5.8371e-05 1395550000.0 1779050.0 3014400.0 3265900.0 3286700.0 3331300.0 3480300.0 3657400.0 3353700.0 3255300.0 3749500.0 False True 1769471.7924710384 3114732.481756723 3725710.332288312 3702795.883007056 3755521.3088379423 3239715.052744972 3480477.5893751993 3603970.123743537 2453074.9337851866 3510203.6998915514 0.5040937631413547 0.8873366756045963 1.0613943379990793 1.054866383714841 1.0698870008466945 0.9229421793513191 0.991531514106355 1.0267125306303113 0.698841190857663 1.0 21.743123323015336 4.710709897907732 3.162126350434033 0.9858550174342854 0.4476070075304908 0.6525615394551907 0.10319149774308922 0.18084916540654258 2.8914057694541544 0.02453866613807961 0.23217565860094583 51370.03929192798 -4.710709897907732 -0.5382480099037945 SSSSSASPSS(ph)PSSR ddPTM_BT-474_Trastuzumab_2h_R1 9 SSSSSASPSSPSSR 14 0 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 SSSSSASPS(0.028)S(0.971)PS(0.001)SR;SSSSSASPSS(0.997)PS(0.003)SR;SSSSSASPS(0.002)S(0.998)PSSR;SSSSSASPS(0.03)S(0.968)PS(0.003)SR;SSSSSASPS(0.002)S(0.998)PSSR;SSSSSASPS(0.003)S(0.997)PSSR;SSSSSAS(0.012)PS(0.092)S(0.893)PS(0.001)S(0.001)R;SSSSSASPS(0.019)S(0.98)PS(0.001)SR;SSSSSASPS(0.004)S(0.996)PSSR 278.33 3.7544e-33 5450263000.0 3119531.0 3684558.0 3387497.0 3596881.0 3683241.0 3116913.0 3443241.0 3374137.0 3932905.0 3536478.0 True False 3102735.791708474 3807196.2856676527 3864427.132948244 4052245.765803486 4152279.9090702073 2901448.1407339894 3276678.2783720302 3625932.2364605214 2963693.260976999 3310776.946308854 0.9371624371033745 1.1499404361602346 1.1672266648034528 1.223956138247636 1.254170841590381 0.8763647288195539 0.9897007051547704 1.09519073476183 0.8951654880529435 1.0 21.65873838607119 2.740693299800563 24.998972180069252 0.9884329382244119 1.1521384861106383 0.4420538053581964 0.09736853468990954 203.2109706566857 2382016.454257807 0.03158639748578596 0.03203430205011427 550.4188515064848 -2.740693299800563 0.16370554788622638 SSSSSGVPYS(ph)PAIPNK ddPTM_BT-474_Trastuzumab_2h_R1 3 SSSSSGVPYSPAIPNK 16 0 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5;Q9UPT5-4 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 SSSSSGVPYS(1)PAIPNK;SSSSSGVPYS(1)PAIPNK;SSSSSGVPYS(1)PAIPNK 266.38 3.6301999999999995e-27 1237100000.0 1494750.0 1238070.0 1123810.0 1023290.0 1089460.0 1442230.0 1276660.0 1290120.0 1842040.0 1238500.0 True False 1486702.4320823383 1279278.411520881 1282032.6796683697 1152838.4090797135 1228196.2732646668 1342532.0347442424 1214903.0784851948 1386395.3054966195 1388093.9240714123 1159457.869666803 1.282239286977781 1.1033418677717988 1.1057173470535773 0.99429090029033 1.059284951524472 1.1578963495500274 1.0478199426377823 1.1957271943783798 1.19719220541434 1.0 20.14501896815497 1.731954229736791 24.999999999698368 1.1496294056643617 1.1027800867714408 1.9182030120190596e-05 0.0887191556663986 2.1602187010911758 8119.197410223519 0.04036094608695986 0.02238207632697392 53.945376652674675 -1.731954229736791 -0.04684931889292088 SSSSSSQPEHSAMLVSTAAS(ph)PSLIK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSSSSQPEHSAMLVSTAASPSLIK 25 0 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin 1 SSSSSSQPEHSAMLVSTAAS(0.973)PS(0.027)LIK;SSSSSSQPEHSAMLVSTAAS(0.999)PSLIK 290.27 5.212199999999998e-63 968280000.0 1002550.0 1046770.0 1024770.0 1025680.0 1036280.0 1327180.0 1158950.0 1080390.0 1416120.0 1356180.0 True False 997152.3821937753 1081611.106664172 1169048.7085394824 1155530.982834659 1168244.1154872226 1235435.1704456718 1102887.1608810609 1161014.187909259 1067136.201035811 1269627.4313158873 0.785389758915567 0.8519122066724342 0.920780915490963 0.9101339135663015 0.9201471917445991 0.9730690594525219 0.868669921331165 0.9144526648309279 0.8405112986018213 1.0 20.275973773526626 4.529826390336364 2.320446129791119 0.9148250668513014 0.7784507381655862 0.4906118277311534 0.043080534681282937 0.3187597330699662 2.747262240700564 0.01033789372690748 0.07306157615715142 33870.87299111731 -4.529826390336364 -0.1363743286857152 SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 0 P08047;H3BVI2;P08047-2 P08047 SP1 Transcription factor Sp1 1 SSSTGSSSSTGGGGQES(0.004)QPS(0.996)PLALLAATCSR;SSSTGSSSSTGGGGQES(0.014)QPS(0.984)PLALLAATCSR 179.24 2.3332e-18 124220000.0 44511.0 52746.0 46122.0 49370.0 45210.0 55558.0 54163.0 51183.0 56044.0 49092.0 True False 44271.35772163702 54501.61872436967 52615.576700389385 55620.236937979826 50967.225519335836 51717.406229464475 51542.92876724697 55002.535362007766 42232.7071511249 45958.906530224274 0.9632813542359311 1.1858771854923789 1.1448396115731656 1.2102167161310051 1.108973850059246 1.12529670816805 1.1215003284151341 1.1967764142916688 0.9189232368561927 1.0 15.488056852855726 1.2350457637854426 24.999814530563466 0.9594615548772607 1.1382158063215078 0.5067639252046015 0.06791110448937258 68.49608743121932 487149.5972603768 0.05353520587863546 0.015450675155933456 17.180894213094078 -1.2350457637854426 0.17875425144424706 SSSTLPVPQPSSAPPT(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSTLPVPQPSSAPPTPTR 19 0 Q08999 Q08999 RBL2 Retinoblastoma-like protein 2 1 SSSTLPVPQPS(0.012)S(0.012)APPT(0.924)PT(0.051)R 113.33 0.002003 90500000.0 40263.0 58168.0 56285.0 56958.0 59980.0 65324.0 58389.0 52092.0 61189.0 51654.0 True False 40046.228481639824 60104.086716701466 64209.43876200978 64168.87695996467 67618.09747068703 60808.30563615573 55564.50100235927 55979.36955781624 46109.790840592796 48357.39749678569 0.8281303493286977 1.2429140075351774 1.3278100577326926 1.3269712656523744 1.3982989360662264 1.2574768036306678 1.1490382832544417 1.1576174991951784 0.953520934282241 1.0 15.561448983120924 1.4679590079602383 1.7284045116321403 0.9726890481223274 1.2414652412518714 0.2813412407954117 0.14866250692895938 0.43147775458102117 2.448253256787418 0.13215940674057652 0.04275161359744286 29.373723871712954 -1.4679590079602383 0.26877619312954404 SSSVGSSSSYPIS(ph)PAVSR ddPTM_BT-474_Trastuzumab_2h_R1 5 SSSVGSSSSYPISPAVSR 18 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR 457.93 4.238699999999996e-214 4085560000.0 1302420.0 1661700.0 1545950.0 1480290.0 1435330.0 1510300.0 1519300.0 1337330.0 1550670.0 1511590.0 True False 1295407.9154324653 1717008.679981136 1763606.3223617142 1667694.5622224484 1618110.7676325638 1405896.515863787 1445805.654710381 1437128.3554241403 1168528.1564134418 1415119.0320626933 0.9154056203627368 1.213331628702926 1.24626005473975 1.1784835935614535 1.1434449901178896 0.993482868938973 1.0216848349519818 1.0155529837863646 0.8257454884980114 1.0 20.432491979090862 2.7216629017102347 3.6817802472990637 0.9773791858171231 1.1533259111536012 0.4199728126867879 0.09819511447323263 0.23241589881659522 6.945226693957274 0.03254050988303472 0.03209965642273615 526.8207857064141 -2.7216629017102347 0.17594672533647804 SSSVS(ph)PSSWK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSSVSPSSWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 SSSVS(0.997)PS(0.003)SWK 196.67 3.4537e-07 293950000.0 817200.0 614030.0 592200.0 499960.0 548420.0 877510.0 791320.0 694470.0 947910.0 907810.0 True False 812800.2859994562 634467.6173610269 675576.6125053242 563254.8847379467 618258.0362599896 816849.7991363506 753040.828464041 746294.8778472055 714310.2818432444 849872.7885847562 0.9563787627004334 0.7465442191855195 0.7949149820766972 0.6627519933611503 0.7274712693055378 0.9611436089118739 0.8860629950489839 0.8781253946134303 0.8404908257302177 1.0 19.696887385084 2.7430879420092977 24.986952853110708 0.9012153589716885 0.7704663804497724 0.4016644728717993 0.08184400060753189 411.4540591767213 2270875.9209470637 0.02535274090422494 0.026073963547237695 553.4621706159238 -2.7430879420092977 -0.13074897852191603 SST(ph)PLPTISSSAENTR ddPTM_BT-474_Trastuzumab_2h_R1 8 SSTPLPTISSSAENTR 16 0 P42166;P42167;G5E972;H0YJH7;P42167-3;P42167-2 P42166;P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin 1 SS(0.002)T(0.998)PLPTISSSAENTR;SS(0.001)T(0.999)PLPTISSSAENTR;SST(1)PLPTISSSAENTR;SS(0.002)T(0.998)PLPTISSSAENTR;SS(0.002)T(0.998)PLPTISSSAENTR;SST(1)PLPTISSSAENTR;SS(0.002)T(0.998)PLPTISSSAENTR;SS(0.002)T(0.998)PLPTISSSAENTR 414.86 3.170199999999998e-139 42941813000.0 6704420.0 6703896.0 7238312.0 6046420.0 7396960.0 8695727.0 6515292.0 6568098.0 9466137.0 7646541.0 True False 6668324.147651091 6927031.125769293 8257403.413064237 6811896.152046592 8338919.01078315 8094611.860029571 6200122.435127569 7058242.824885849 7133334.37608715 7158532.206846888 0.9315211491642197 0.9676608172753386 1.153505100552082 0.9515772165600161 1.1648922949326488 1.130764188262973 0.8661164406297379 0.9859902310888374 0.9964800283030595 1.0 22.77123237539144 -0.8360188319842848 5.302063996529649 0.9999999891811617 1.0160575626822779 0.0026483766897053007 0.09571689648067641 1.2538811631774191e-08 2.7590413046063e-09 0.09349609336353655 0.022037225766814585 0.14587510041835822 0.8360188319842848 0.01605757350111614 SST(ph)PPGESYFGVSSLQLK ddPTM_BT-474_Trastuzumab_2h_R1 8 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.02)S(0.02)T(0.961)PPGESYFGVSSLQLK;S(0.046)S(0.046)T(0.908)PPGESYFGVSSLQLK;S(0.308)S(0.308)T(0.384)PPGESYFGVSSLQLK;S(0.115)S(0.115)T(0.769)PPGESYFGVSSLQLK;S(0.105)S(0.105)T(0.79)PPGESYFGVSSLQLK;S(0.077)S(0.077)T(0.846)PPGESYFGVSSLQLK;S(0.088)S(0.088)T(0.824)PPGESYFGVSSLQLK;S(0.03)S(0.03)T(0.94)PPGESYFGVSSLQLK 255.49 1.6275e-29 20144500000.0 9745960.0 8469450.0 7716270.0 7748920.0 7990070.0 10504750.0 10240780.0 9851400.0 13577130.0 10683890.0 True False 9693488.834237961 8751350.523359356 8802653.74497882 8729932.477485329 9007558.053644761 9778581.358021662 9745394.347821344 10586561.492395598 10231228.235721096 10002034.993261594 0.969151661713691 0.8749569991761849 0.8800862775334418 0.872815630355894 0.9005725394595384 0.9776591828172493 0.9743411570132328 1.058440757258678 1.0229146611278515 1.0 23.253790221811837 2.4399309632090147 1.6137717813697776 1.028634058891494 0.8943924304221097 0.7433128713789583 0.03209271033686429 0.1726818093811246 0.9124803006446209 0.015067683345037275 0.0112418426989155 275.37909174413306 -2.4399309632090147 -0.13424162846938426 SST(ph)PPRQS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.251)S(0.325)T(0.423)PPRQS(1)PSR;S(0.194)S(0.241)T(0.566)PPRQS(0.992)PS(0.008)R;S(0.141)S(0.047)T(0.812)PPRQS(0.722)PS(0.278)R 142.03 0.00094919 1668580000.0 895770.0 890590.0 834680.0 749480.0 745820.0 864770.0 895780.0 782760.0 995820.0 842790.0 True False 890947.2738494038 920232.7497769753 952195.6888313829 844364.0911540854 840795.7561785234 804990.4853496167 852447.6991880888 841173.5259747417 750413.5043043538 789002.4206511787 1.1292072755798241 1.1663243682034456 1.2068349398035023 1.0701666674954122 1.0656440768389515 1.020263644673286 1.0804120201361962 1.066122871055966 0.9510915108283486 1.0 19.58967020085564 3.57995576976659 4.067008980941025 1.0404917990630662 1.1668110723040237 0.694588573120453 0.040175365058326605 0.1358955160759514 3.914981209359528 0.010978325029917814 0.017327209246836985 3801.5067833041276 -3.57995576976659 0.12631927324095749 SST(ph)PPRQS(ph)PSRS(ph)S(ph)SPQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 S(0.234)S(0.266)T(0.5)PPRQS(0.991)PS(0.146)RS(0.806)S(0.625)S(0.431)PQPK 89.721 0.0017064 443280000.0 317110.0 287630.0 152940.0 273500.0 261190.0 352850.0 367200.0 337780.0 455530.0 324220.0 True False 315402.71499423333 297203.59067399334 174472.6226216891 308125.071957413 294450.9983055809 328458.3100195568 349437.13315977866 362986.85881208547 343270.73528927116 303528.0020212929 1.0391222980873684 0.9791636642906643 0.5748155737191246 1.01514545579158 0.9700950039032141 1.0821351171300333 1.1512517159298705 1.19589249227365 1.1309359696743573 1.0 18.211470093104648 2.902791799322861 1.6379697863550648 1.1410923272147062 0.8808357483204838 0.37731972940381986 0.128962303490024 0.35539800411079914 1.9230332503876848 0.048603433362937945 0.053554714439978765 799.4509065406417 -2.902791799322861 -0.2602565788942224 SST(ph)PPRQS(ph)PSRSS(ph)S(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 S(0.012)S(0.015)T(0.973)PPRQS(1)PS(0.001)RS(0.328)S(0.888)S(0.784)PQPK 165.62 1.6654e-11 581130000.0 424670.0 366230.0 191030.0 342120.0 352000.0 521970.0 508080.0 426020.0 663290.0 528190.0 True False 422383.62390527275 378419.74415929016 217925.36353747413 385432.35692164575 396825.11353254184 485887.4424852155 483502.2293459161 457811.7756857262 499831.06713064056 494480.4619937904 0.8541967911172534 0.7652875558186205 0.44071582253984143 0.7794693350826184 0.8025091869808297 0.9826221253031372 0.9777984501073933 0.9258440138156061 1.010820660365985 1.0 18.915553992506066 2.992862344017811 2.1508710342629174 0.9718352901235653 0.6915238275641067 0.6069252401508423 0.10298512302951461 0.2196369301498906 2.04214674343871 0.03523820804201338 0.041096146723637546 983.6992584871371 -2.992862344017811 -0.2803114625594586 SST(ph)PPRQSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.003)S(0.057)T(0.94)PPRQS(0.435)PS(0.565)R 134.37 0.0035657 501660000.0 346710.0 360860.0 327620.0 319430.0 290750.0 337350.0 362280.0 294090.0 409390.0 342390.0 True False 344843.35188310203 372871.00695552345 373746.0482759109 359869.8052481038 327775.2890897342 314029.7885364816 344755.13235600415 316036.4891587612 308501.32004494703 320538.3770651728 1.075825475378218 1.1632647871044477 1.165994698350643 1.1227042719285185 1.0225773652778243 0.9796948228530905 1.075550252398974 0.9859552296120341 0.9624473764095387 1.0 18.290137571022022 3.2340403193679785 3.840257143613072 1.0046206201195675 1.1388788531186511 0.7500772506072854 0.036243406823975026 0.10591968000582552 3.4190753028377845 0.010580712057818752 0.013704820283395626 1714.1164365929592 -3.2340403193679785 0.13425823299908357 SST(ph)PSHGQTTATEPTPAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTPSHGQTTATEPTPAQK 19 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 S(0.139)S(0.139)T(0.722)PS(0.001)HGQTTATEPTPAQK 205.65 1.478e-15 435790000.0 432100.0 389810.0 372370.0 346370.0 397210.0 538360.0 492060.0 443240.0 568860.0 524010.0 True False 429773.62161082315 402784.5902048786 424796.45930193807 390220.4064858835 447792.33905187703 501144.4403631254 468257.17794825893 476316.81952711433 428672.07533346885 490567.2331724683 0.8760748630345802 0.8210588946189807 0.8659291338208737 0.795447351757173 0.9128052360041076 1.021561177501104 0.9545219213278237 0.9709511506645125 0.8738294087871967 1.0 18.90409134853146 3.0292333478318785 6.119203714311126 0.9629308961534044 0.8410417341814976 0.6664187983483624 0.041520123358931516 0.10029140629835644 11.549804219383082 0.011664449478018884 0.013782617489722027 1069.6294402150288 -3.0292333478318785 -0.1218891619719068 SSTEESS(ph)PQDQPPVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTEESSPQDQPPVMR 16 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 1 SSTEES(0.008)S(0.992)PQDQPPVMR 191.89 6.5367e-10 364900000.0 372980.0 391400.0 411760.0 431510.0 387210.0 413890.0 425920.0 404860.0 416540.0 389040.0 True False 370971.917121974 404427.51239370374 469732.2289179201 486139.1217562827 436518.898326521 385278.75849226123 405316.62242759526 435072.7090374238 313889.298350039 364211.1341260989 1.0185628125073583 1.1104205075006877 1.2897250657781572 1.3347728177578704 1.1985325472652557 1.0578445368418314 1.1128617014966506 1.1945618029535332 0.8618333404419283 1.0 18.474415501372583 1.2449698925234267 24.9987630887318 0.9309166415160348 1.1688836471671045 0.47963086651050524 0.0973076469864234 120.00714196240224 468090.1128043952 0.07334308481154678 0.0253485694691379 17.578017500812958 -1.2449698925234267 0.23796700565106965 SSTFPQTDVLSSS(ph)LEAEHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SSTFPQTDVLSSSLEAEHR 19 0 D4PHA4;Q86WP2-3;Q86WP2;Q86WP2-2;Q86WP2-4 D4PHA4 GPBP1 Vasculin 1 SSTFPQTDVLSS(0.051)S(0.949)LEAEHR;SSTFPQTDVLSS(0.051)S(0.949)LEAEHR;SSTFPQTDVLS(0.001)S(0.182)S(0.817)LEAEHR 185.71 1.4248e-14 1275450000.0 1245570.0 1408590.0 1357690.0 1486250.0 1365830.0 1638540.0 1450010.0 1362820.0 1620660.0 1489060.0 True False 1238863.9895158375 1455474.0666393642 1548840.9507469675 1674409.0976113544 1539760.3545913384 1525271.5865082762 1379867.4767238859 1464520.54865974 1221270.0587313916 1394026.9159515963 0.8886944544181624 1.0440788839760835 1.111055269467083 1.20113111049105 1.1045413377404274 1.0941478740868422 0.9898427791704115 1.0505683440552673 0.8760735139017909 1.0 20.410826986437975 1.6565687475294741 1.5646482531549568 0.9503187846975009 1.078079670210505 0.2279712381372836 0.08425901411481979 0.5387028154276231 2.6061224536608516 0.07053856641858836 0.02599201661862478 45.349107839134504 -1.6565687475294741 0.12776088551300424 SSTLSSSSMSLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 7 SSTLSSSSMSLSPK 14 0 O15119;O15119-2;O15119-3 O15119 TBX3 T-box transcription factor TBX3 1 SSTLSSSSMSLS(1)PK;SSTLSSSSMSLS(1)PK;SSTLSSSSMSLS(1)PK;SSTLSSSSMS(0.001)LS(0.999)PK;SSTLSSSSMS(0.031)LS(0.969)PK;SSTLSSSSMS(0.001)LS(0.999)PK;SSTLSSSSMSLS(1)PK 239.48 3.1807e-17 5667680000.0 4696740.0 3761100.0 3182380.0 3185060.0 3221520.0 4629440.0 4417940.0 4287430.0 6751950.0 4232560.0 True False 4671453.273696873 3886285.9398670355 3630431.4422571715 3588288.26942844 3631761.4765549824 4309417.709329572 4204227.3640302615 4607379.7977284035 5088022.393994685 3962434.3971230765 1.1789351710374258 0.9807824055557037 0.9162123781514324 0.9055767010385622 0.9165480390519073 1.0875682162607971 1.0610213173706393 1.1627649409346914 1.2840647652586605 1.0 21.917955619218823 2.2383178983599534 1.7374616370539215 1.158565740348897 0.9753580742105797 0.3188173435431785 0.10091855268097617 0.38798627402895125 2.33627131351469 0.05303706151282102 0.033129775984562224 173.10830276114962 -2.2383178983599534 -0.18320766613831718 SSTS(ph)PCGTSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SSTSPCGTSK 10 0 H0Y459;O75376;O75376-2;A0A088AWL3;O75376-3 H0Y459;O75376 NCOR1 Nuclear receptor corepressor 1 1 SST(0.042)S(0.958)PCGT(0.001)SK;SST(0.003)S(0.997)PCGTSK;SST(0.037)S(0.949)PCGT(0.012)S(0.002)K;SS(0.001)T(0.026)S(0.974)PCGTSK;SST(0.007)S(0.993)PCGTSK;SST(0.002)S(0.997)PCGTSK 216.53 8.0506e-09 2095463000.0 6705660.0 5464940.0 4781330.0 4332710.0 4541130.0 4328690.0 6064940.0 5888270.0 7685000.0 6801740.0 True False 6669557.47162887 5646837.224274003 5454499.703934623 4881230.64175723 5119415.988113725 4029457.84894022 5771555.681879264 6327682.60742922 5791134.723724126 6367647.12993742 1.0474131709139507 0.8868012170029748 0.8565957868944017 0.7665673901444979 0.8039729406557171 0.6328016874546597 0.9063874872626596 0.9937238163967493 0.9094622559245114 1.0 22.60232895891258 2.006051700667571 24.99949013443702 0.9627874427274452 0.8264826312623952 0.2704252447799762 0.10007481038934743 209.23161330193636 864328.3051679184 0.03940025251174718 0.02902025619597021 101.40320941913724 -2.006051700667571 -0.13630481146505002 SSTS(ph)PSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR 39 0 Q9BPZ3;D6RA77;D6R9Y1 Q9BPZ3 PAIP2 Polyadenylate-binding protein-interacting protein 2 1 S(0.235)S(0.235)T(0.235)S(0.295)PSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR 293.13 3.0839999999999996e-92 87159000.0 18823.0 24118.0 25521.0 22035.0 25992.0 29338.0 27394.0 9896.4 30487.0 22872.0 True False 18721.659059431895 24920.753050361134 29114.13496749139 24824.628740700547 29301.927133346067 27309.9331142235 26068.847564757572 10634.919620900951 22973.8873548702 21412.289378295645 0.874341773019793 1.1638528048113252 1.3596927658283307 1.1593635926601937 1.3684630641620077 1.275432656066471 1.2174712896969346 0.4966736360139487 1.0729299865598423 1.0 14.386151434877622 1.772498040185196 24.999999999437104 0.8062673839770059 1.2147178148774989 0.39360803533028366 0.19348022499535547 27.87289395141541 20542.182378969857 0.08649794492393055 0.047990234942814666 59.22404143021083 -1.772498040185196 0.40845043090049293 SSTSPSIINEDVIINGHS(ph)HEDDNPFAEYMWMENEEEFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR 39 0 Q9BPZ3;D6RA77;D6R9Y1 Q9BPZ3 PAIP2 Polyadenylate-binding protein-interacting protein 2 1 S(0.153)S(0.153)T(0.153)S(0.153)PS(0.153)IINEDVIINGHS(0.236)HEDDNPFAEYMWMENEEEFNR 106.66 2.2668e-05 67088000.0 12957.0 14193.0 15697.0 16343.0 17613.0 16776.0 16207.0 9009.4 18958.0 12193.0 True False 12887.240951658025 14665.405425150324 17907.001159230138 18412.02212431446 19855.911149570038 15616.314606456242 15423.005493247643 9681.727176806215 14286.054924185035 11414.832301047505 1.1289908263019686 1.2847674883322222 1.5687485095674043 1.6129910312063755 1.7394833866939876 1.3680721884125429 1.351137282308766 0.8481707765358718 1.2515343675153288 1.0 13.478622044173447 1.9200825100406806 4.98762284823766 1.027001043088007 1.4617345613879469 0.5009839233425949 0.18612145460091764 0.18570054725033677 7.9506605288219285 0.08987127514469563 0.053513813438156047 83.19218099107566 -1.9200825100406806 0.4347335182999399 SSTVAS(ph)LDTDSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSTVASLDTDSTK 13 0 C9IZZ8;C9J6Y2;C9J0J6;C9JZ07;G3V1A3;C9J5T5;C9JBU8;A8MPU2;O14713-2;O14713 C9IZZ8 ITGB1BP1 Integrin beta-1-binding protein 1 1 SSTVAS(1)LDTDSTK 211.51 2.2371e-08 213620000.0 282860.0 224550.0 218650.0 188850.0 198210.0 299200.0 293120.0 249680.0 409600.0 274540.0 True False 281337.1131887003 232024.0110066588 249434.01946013025 212758.39063677305 223450.8686172871 278517.00824104156 278940.6657728605 268312.38944935036 308659.56835880294 257018.62215448098 1.094617622763547 0.902751750288354 0.9704900655416633 0.8277936783463677 0.8693956365659061 1.0836452468165476 1.0852936002637323 1.0439414358391559 1.2009229750414083 1.0 17.97151336738364 2.7245154381959638 23.78648509740138 1.0821780094784867 0.9275656561958868 0.4585183683387598 0.08125902171331867 371.11911257306247 628514.5296973573 0.025904674341139675 0.02455192721548266 530.2924430026029 -2.7245154381959638 -0.15461235328259992 SSVKT(ph)PEPVVPTAPEPHPTTSTDQPVTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVKTPEPVVPTAPEPHPTTSTDQPVTPK 29 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.22)S(0.22)VKT(0.561)PEPVVPTAPEPHPTTSTDQPVTPK 200.84 4.884e-25 751400000.0 277030.0 218400.0 226620.0 202800.0 205820.0 300970.0 313150.0 298330.0 449580.0 297690.0 True False 275538.5012609264 225669.31197441212 258526.1261836488 228474.45920644776 232029.9570092832 280164.652307173 298001.7381508296 320592.89948904444 338787.0330633563 278691.16933476867 0.9886875925011631 0.8097469055552824 0.9276437671159316 0.8198123383378548 0.8325701799706642 1.0052871534319567 1.0692902070135735 1.1503518401903243 1.2156360528826065 1.0 18.088307764073456 2.3884371606812302 2.148770878684685 1.1310247287443882 0.8723496631775888 0.6946101006098586 0.07262677248053064 0.15590929750824054 1.4736750627974755 0.02911803764091646 0.022351624648641075 244.58913473864914 -2.3884371606812302 -0.2586750655667994 SSVKT(ph)PESIVPIAPELQPSTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSVKTPESIVPIAPELQPSTSR 22 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.205)S(0.205)VKT(0.585)PES(0.005)IVPIAPELQPSTSR;S(0.26)S(0.26)VKT(0.452)PES(0.028)IVPIAPELQPSTSR 110.17 0.00059178 436190000.0 426360.0 359920.0 357940.0 344650.0 337140.0 471390.0 480180.0 481330.0 700290.0 510090.0 True False 424064.5251330491 371899.7196237652 408334.8407297472 388282.65466223966 380072.7806146617 438803.9188327026 456951.8589342662 517249.28874421626 527712.9129052395 477535.6194899804 0.8880270032756097 0.7787894859465417 0.85508771296654 0.8130967383688257 0.7959045673296342 0.9188925410451179 0.9568958634380025 1.0831637842987525 1.105075498805408 1.0 18.865248822548512 2.179825037351403 1.674671403449722 1.0709963987596818 0.8254974228697491 0.8502201751725306 0.04250809024591626 0.11926951084852308 0.6543009791743947 0.022395382643364773 0.013036407463870364 151.29516082953248 -2.179825037351403 -0.24549897588993264 SSVKT(ph)PETVVPTALELQPSTSTDRPVTSEPTSQATR ddPTM_BT-474_Trastuzumab_2h_R1 2 SSVKTPETVVPTALELQPSTSTDRPVTSEPTSQATR 36 2 Q14676;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.051)S(0.051)VKT(0.816)PET(0.083)VVPTALELQPSTSTDRPVTSEPTSQATR;SSVKT(0.997)PET(0.002)VVPTALELQPSTSTDRPVTSEPTSQATR 182.98 2.5416e-21 953440000.0 48006.1 43697.5 50172.6 44999.6 34834.2 65648.2 61992.7 65232.8 66956.0 59204.1 True False 47747.640491579106 45151.94487180341 57236.46597194303 50696.544746087035 39270.12889152064 61110.09445324036 58993.87626588835 70100.8027814466 50455.59096443368 55425.64365081988 0.8614720072966225 0.8146399734436914 1.0326712005823744 0.9146766984876883 0.7085191313053834 1.1025599420772156 1.0643787312159736 1.2647720110041454 0.9103293645501457 1.0 15.758265998569936 2.704902110659562 24.016400293323894 1.0991455408525976 0.875440275250756 0.4230258975315395 0.1149562669378713 344.647911114655 245916.5137747096 0.03737133379004708 0.035236592708329684 506.87644618900276 -2.704902110659562 -0.22370526560184167 SSVNSHMTQSTDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 SSVNSHMTQSTDSR 14 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 0 ;;; 195.54 2.6106e-08 663240000.0 395828.0 570393.0 609162.0 612499.0 580278.0 628680.0 639289.0 582928.0 622721.0 677952.0 False True 393696.90602862503 589378.1861951508 694926.7146689785 690041.3105990635 654172.9637228304 585220.8313535356 608364.1487488614 626429.0474084063 469259.7535838928 634684.5229360906 0.6203033031392641 0.9286159736000024 1.0949167492760083 1.087219375394391 1.0307057129683659 0.9220657038338783 0.9585299889377017 0.9869927889694017 0.7393590620629404 1.0 19.275680136727278 4.719931211932647 3.9838055337026566 0.9816487762645436 0.5936725853011111 0.5569042455093319 0.09481031897514419 0.15925457472574203 5.24039127146892 0.023223336832318794 0.1729822914061922 52472.43423802331 -4.719931211932647 -0.3879761909634325 SSVQGASS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 SSVQGASSR 9 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 SSVQGAS(0.014)S(0.986)R 79.152 0.029110000000000007 77303000.0 291750.0 269950.0 247920.0 249700.0 246500.0 209450.0 253070.0 276990.0 346880.0 315440.0 True False 290179.2504164724 278935.1225617793 282824.9810407297 281311.9943976823 277890.3138800324 194971.21449226633 240828.03727871767 297660.40032672073 261396.07195386154 295308.3491382288 0.9826313792457132 0.9445554904755318 0.9577276831693781 0.9526042701420709 0.9410174642571879 0.6602292656514213 0.8155138111790743 1.0079647297320096 0.8851631615451092 1.0 18.1718626202417 2.974476665358411 24.990921318910218 0.8725521190617529 0.9567788918072023 0.16861506581358887 0.09160187161930314 1477.3982260195219 1446580.8221661246 0.030020784669972843 0.031958615243319055 942.9239467971499 -2.974476665358411 0.08422677274544943 SSVVGGFVSHYLLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 SSVVGGFVSHYLLEK 15 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ; 159.22 1.7783000000000004e-06 742880000.0 2009550.0 2315930.0 2209700.0 2312310.0 2333920.0 2706900.0 2602800.0 2192880.0 2896600.0 2655000.0 False True 1998730.806081994 2393014.330040751 2520806.55294329 2605048.208913516 2631130.8777723555 2519778.3743572035 2476892.620338434 2356523.840819012 2182771.7424514377 2485555.626940138 0.8041384326379154 0.9627683661969333 1.014182312244827 1.0480747969098885 1.0585684944059888 1.0137686507781745 0.9965146599384826 0.9480873472624823 0.87818261590812 1.0 21.245136960600124 4.7256047991191545 3.2316060641090414 0.9951109741974221 0.7797482659771269 0.5789915997014756 0.048479603670245806 0.2472171440479872 4.1746146382865135 0.013049589316234338 0.13152672622296294 53162.426969182095 -4.7256047991191545 -0.21536270822029524 SSWSSSDEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSWSSSDEKR 10 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 0 124.81 0.00068277 101760000.0 65583.0 59698.0 57826.0 63442.0 55311.0 77036.0 74062.0 60503.0 98532.0 71317.0 False True 65229.90841495633 61685.011841796964 65967.39816739764 71473.75069514524 62354.52799601821 71710.68264323815 70479.33811568502 65018.0410880088 74250.10886115624 66765.48800244452 0.9770003989571384 0.9239056537643889 0.9880463715772188 1.070519408058971 0.9339335315535354 1.0740681269432582 1.0556252972060136 0.9738270929080645 1.1121031401498584 1.0 16.026814926048935 3.9976516857845623 8.225659590301113 1.0266319792615275 0.951605486528152 0.2913469498278778 0.05081919226717839 0.13245572800957267 92.4272812545293 0.012143016734785536 0.024552761918354402 9946.07399250154 -3.9976516857845623 -0.07502649273337547 SSYSS(ph)PTSLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSYSSPTSLSPR 12 0 Q96JY6;Q96JY6-5;Q96JY6-3;Q96JY6-4;C9JS55;C9JSR2;C9K0F0;C9J0X3;Q96JY6-2;C9J760;A0A087WXJ0 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 2 S(0.006)S(0.005)Y(0.026)S(0.163)S(0.796)PT(0.023)S(0.128)LS(0.853)PR 74.733 0.052207 272350000.0 198120.0 223120.0 204020.0 220940.0 187230.0 240530.0 222630.0 211420.0 232870.0 219110.0 True False 197053.34393320145 230546.4143211117 232744.24262637028 248910.98134651137 211072.63070084588 223902.72724671694 211860.53637081047 227197.23396900715 175482.30879813127 205126.21221049136 0.9606443847897611 1.1239246892763528 1.134639206361099 1.2134528233334219 1.0289890717830472 1.0915364001211019 1.0328301492420122 1.1075972764312905 0.855484566828832 1.0 17.646152333927887 1.2507610099407238 24.999060541170888 0.9277422794016897 1.090125809161825 0.43276177372973523 0.07271101295251396 169.4199676586044 347152.1337865067 0.04791377386226187 0.01721320721510272 17.813982032416938 -1.2507610099407238 0.16238352976013537 SSYSSPTSLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 SSYSSPTSLSPR 12 0 Q96JY6;Q96JY6-5;Q96JY6-3;Q96JY6-4;C9JS55;C9JSR2;C9K0F0;C9J0X3;Q96JY6-2;C9J760;A0A087WXJ0 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 1 SSYSSPTSLS(1)PR 208.27 0.00011611 0.0 232710.0 239620.0 205940.0 199670.0 188230.0 257720.0 231100.0 190190.0 280040.0 228480.0 True False 231457.11521651168 247595.60684665092 234934.56193743093 224948.20152737378 212199.97477338163 239904.42300762422 219920.81011226805 204382.94356525104 211027.89434374814 213898.21078843044 1.0820900014233825 1.157539401260121 1.0983474853364146 1.0516600428690497 0.9920605412790079 1.121582186794993 1.0281563800914382 0.95551497514586 0.9865809235425472 1.0 17.706564889162983 3.0377554590617324 0.4944373864603852 0.9750226948299682 1.1350714215968485 0.5150395590185757 0.043641110303018295 0.9418409319230655 0.46419392771394613 0.03944076285799633 0.06981017636228365 1090.8259452324169 -3.0377554590617324 0.1600487267668803 ST(ph)DKEAQGQQFHHHR ddPTM_BT-474_Trastuzumab_2h_R1 1 STDKEAQGQQFHHHR 15 1 A6ND36 A6ND36 FAM83G Protein FAM83G 1 S(0.426)T(0.574)DKEAQGQQFHHHR 163.62 2.2395e-06 105100000.0 69884.0 62401.0 46139.0 61833.0 54070.0 59121.0 52817.0 12628.0 80445.0 37259.0 True False 69507.75230884227 64477.97956279889 52634.970152622736 69661.05146011976 60955.49400200152 55034.104425864316 50262.039929466286 13570.365483684707 60620.40765777324 34881.09872096525 1.9927053578465608 1.848507699788839 1.5089825745938024 1.9971002638815978 1.7475221892985922 1.5777629273124392 1.4409534611149257 0.3890463884822599 1.7379156586411484 1.0 15.090157863882258 2.0774181258795963 3.374173047827417 0.9645018060104339 1.780404167172638 0.4706006139507253 0.34260877958494224 0.1794731028920846 4.057343194500609 0.14268889555545788 0.09449679631727753 119.51381944373875 -2.0774181258795963 0.8159023611622042 ST(ph)MIINLILIVVCLFCLLLVCRCT(ph)QQLRRDSDIENGP ddPTM_BT-474_Trastuzumab_2h_R1 1 STMIINLILIVVCLFCLLLVCRCTQQLRRDSDIENGP 37 3 O42043 O42043 ERVK-18 Endogenous retrovirus group K member 18 Env polyprotein;Surface protein;Transmembrane protein 2 S(0.495)T(0.515)MIINLILIVVCLFCLLLVCRCT(0.98)QQLRRDS(0.01)DIENGP 42.187 0.043385 723480000.0 218490.0 136830.0 108910.0 87672.0 67857.0 128110.0 111200.0 99657.0 190430.0 104930.0 True False 217313.6741165213 141384.30383451816 124243.58133731002 98771.26621078726 76498.18673005013 119254.05723850206 105820.83117474779 107093.91138799215 143501.07813126675 98233.27756490726 2.2122205377188204 1.4392709613206078 1.2647809827501333 1.0054766435490716 0.7787400423395652 1.213988377408108 1.0772401552501094 1.0901999204620885 1.4608194054855694 1.0 16.583924215139348 4.835869462209737 1.4820561811131727 1.0902478577520236 2.8477712955261856 0.8017443223509666 0.1670302783535622 0.6043398230918408 1.0271419537021358 0.04519666003918816 1.666503119356088 68528.22172229979 -4.835869462209737 1.757523437774162 ST(ph)PDSTYSESFK ddPTM_BT-474_Trastuzumab_2h_R1 5 STPDSTYSESFK 12 0 Q6ISB3;Q6ISB3-2 Q6ISB3 GRHL2 Grainyhead-like protein 2 homolog 1 S(0.338)T(0.662)PDSTYSESFK;S(0.134)T(0.866)PDSTYSESFK;S(0.003)T(0.997)PDSTYSESFK;S(0.21)T(0.79)PDSTYSESFK;S(0.002)T(0.998)PDSTYSESFK 412.13 1.0744999999999992e-119 6075320000.0 6910670.0 6213810.0 5560860.0 5139700.0 5458670.0 7211410.0 7568740.0 6650870.0 9233300.0 6945430.0 True False 6873463.7205676185 6420632.90952253 6343780.752138399 5790385.493014688 6153799.2684280705 6712902.200533184 7202611.130805402 7147191.691833553 6957876.934881187 6502166.711118222 1.0571035819205474 0.9874605181290914 0.9756410492045682 0.8905316874009949 0.946422868227222 1.0324100409567507 1.1077247709581903 1.0992015445578143 1.0700859027474232 1.0 22.632489115543184 2.515631864329502 4.17445332533588 1.0804860074717373 0.9687421930644704 0.4804820659511214 0.047537507608442144 0.17098268945409953 6.535319075942445 0.016941588544201674 0.01523669694784172 327.81729648115436 -2.515631864329502 -0.11174381440726688 ST(ph)TPPPAEPVSLPQEPPKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 S(0.054)T(0.473)T(0.473)PPPAEPVSLPQEPPKPR;S(0.008)T(0.496)T(0.496)PPPAEPVSLPQEPPKPR;S(0.308)T(0.346)T(0.346)PPPAEPVSLPQEPPKPR 223.75 1.0113000000000002e-24 30291460000.0 3537960.0 3166760.0 3075360.0 2893740.0 2966820.0 3555510.0 3695310.0 3568780.0 4983730.0 3820980.0 True False 3518912.0164643084 3272163.6922531547 3508343.9564916845 3260087.1872981554 3344626.9412801573 3309725.9624702735 3516553.737844943 3835100.4854976484 3755556.520060594 3577121.785094437 0.9837272052428621 0.9147476347850338 0.9807728579749942 0.9113715951418434 0.9350050521670618 0.9252483312873553 0.983067938166971 1.0721190711141528 1.049882208570499 1.0 21.770367805845986 1.9590126617220596 4.241940267564902 1.0460388103355645 0.9411321205650066 0.7048353843662581 0.02853659415707426 0.10246204168318293 3.905649255107337 0.012255777159981076 0.007379467764044704 90.9939801260601 -1.9590126617220596 -0.10490668977055784 ST(ph)TPTSSPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.101)T(0.449)T(0.449)PTSSPFR 114.89 0.014477 433880000.0 499360.0 527240.0 464710.0 468070.0 356390.0 495880.0 541630.0 457920.0 661960.0 510340.0 True False 496671.50124411174 544788.8646766901 530137.1286682698 527327.6140077022 401774.1540109729 461600.9827759614 515429.2876724701 492092.315670644 498828.8278095538 477769.664275944 1.0395626561950377 1.1402751271416804 1.109608182159678 1.1037277027767405 0.8409369285089674 0.9661579989083524 1.0788238061401385 1.029978151535439 1.044078067546471 1.0 18.865955728004913 3.381402561060109 23.514336757072787 0.9993285817169366 1.102178936494129 0.3902360158972745 0.06393893666739953 10.808028295808787 2644.1825475368496 0.018797752543988317 0.025452255380381237 2406.5925118873815 -3.381402561060109 0.1028503547771924 STADS(ph)GGEGLETAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 STADSGGEGLETAPK 15 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 STADS(1)GGEGLETAPK 172.91 2.6515e-11 0.0 170220.0 168450.0 133890.0 155600.0 137970.0 165290.0 173050.0 157770.0 227660.0 188380.0 True False 169303.55443322004 174056.75641982455 152740.5482072575 175298.94404597252 155539.6616877409 153863.89135080797 164678.91038480317 169543.59853982716 171556.24348770804 176357.4271197677 0.960002406466515 0.9869545006551909 0.8660851470889767 0.9939980805397192 0.8819569678917517 0.8724548427796923 0.9337792747053776 0.9613635292189132 0.9727758353562331 1.0 17.42814280916455 1.4602039750620128 1.950735235340003 0.9904377514804735 0.9265769879204852 0.2422039457736027 0.04264496666232284 0.46976518670146844 3.3835748951020577 0.03681534806095037 0.011831741429775472 28.853863641652136 -1.4602039750620128 -0.06386076355998838 STAGDTHLGGEDFDNR ddPTM_BT-474_Trastuzumab_2h_R1 12 STAGDTHLGGEDFDNR 16 0 P11142;E9PKE3;P11142-2;E9PN89;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;;;;;;;;;;; 216.89 1.4766e-14 140942680000.0 39752640.0 48391410.0 46467060.0 46094880.0 41409670.0 43262880.0 45403740.0 41455150.0 54697500.0 46260230.0 False True 39538616.20317347 50002088.828624904 53009218.14907407 51930487.081785515 46682946.020156525 40272218.93546518 43207387.63706962 44548743.79798636 41218034.03394926 43307862.51602456 0.9129662353699306 1.1545730018451819 1.22400910757163 1.1991006728297997 1.0779323501104017 0.9299054858817808 0.9976799852701629 1.0286525635270651 0.9517448250579896 1.0 25.368125633346875 2.9627523302783625 6.206371721760591 0.9893367852064425 1.1331790444716976 0.39447463736873367 0.08261614734576696 0.20484593232520612 23.03087891132261 0.025749444652709546 0.028034878520690327 917.809038512836 -2.9627523302783625 0.14384225926525507 STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_BT-474_Trastuzumab_2h_R1 9 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 STAPSAAASAS(0.001)AS(0.002)AAAS(0.498)S(0.498)PAGGGAEALELLEHCGVCR;STAPSAAASAS(0.002)AS(0.002)AAAS(0.498)S(0.498)PAGGGAEALELLEHCGVCR;S(0.001)T(0.001)APS(0.001)AAAS(0.001)AS(0.002)AS(0.008)AAAS(0.493)S(0.493)PAGGGAEALELLEHCGVCR;STAPSAAAS(0.001)AS(0.001)AS(0.003)AAAS(0.498)S(0.498)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.537)S(0.462)PAGGGAEALELLEHCGVCR;STAPS(0.001)AAAS(0.002)AS(0.001)AS(0.005)AAAS(0.495)S(0.495)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.54)S(0.46)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.004)AAAS(0.498)S(0.498)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.001)AAAS(0.518)S(0.481)PAGGGAEALELLEHCGVCR 155.23 5.5409000000000004e-14 473080000.0 65708.6 68664.5 60975.0 66132.4 66868.6 72331.7 70196.4 67786.8 80287.7 68128.1 True False 65354.832198511736 70949.95637393315 69559.74999579901 74504.7550592923 75383.9198487561 67331.5798295072 66800.73195571107 72845.39523039586 60501.87213506117 63780.10633059911 1.0246899222737285 1.112415147227408 1.0906182820586967 1.1681503739285544 1.1819346844298053 1.0556830915348323 1.0473599966963805 1.1421334867773276 0.9486009919998333 1.0 15.960818882321501 1.2355315169293248 24.999950538344507 0.9743004447833139 1.1050624018919903 0.5129757873749768 0.05007491060717257 64.12376233290559 529183.9489087363 0.042191789498097466 0.012317333660639217 17.200121586995422 -1.2355315169293248 0.13076195710867644 STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_BT-474_Trastuzumab_2h_R1 25 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 STAPSAAASASASAAAS(0.012)S(0.988)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.003)S(0.997)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.008)S(0.992)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.004)S(0.996)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.003)S(0.997)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.152)S(0.848)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.171)S(0.828)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.177)S(0.823)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.062)S(0.938)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.007)S(0.993)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.001)S(0.999)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.026)S(0.974)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.03)S(0.97)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.167)S(0.832)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.186)S(0.814)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.173)S(0.826)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.013)S(0.987)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.036)S(0.964)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.031)S(0.969)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.195)S(0.805)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.019)S(0.981)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAASS(1)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.004)S(0.996)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.159)S(0.841)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.041)S(0.959)PAGGGAEALELLEHCGVCR 327.68 3.693799999999998e-129 114013247000.0 5141229.0 6025370.199999999 5211250.0 5488294.2 5200428.4 6056026.7 5635077.899999999 5619221.6 6550212.9 5816275.9 True False 5113549.194308242 6225921.004693797 5944948.703003 6183111.682992514 5862672.131385944 5637387.8285824405 5362487.653888956 6038556.449621124 4936000.699151038 5445076.192497676 0.9391143509348467 1.1434038357942506 1.0918026659009945 1.1355418114280416 1.076692395868333 1.0353184472147028 0.9848324365557065 1.1089939306893732 0.9065071864287131 1.0 22.376520805919153 2.69102719200827 3.671058503451484 1.018377687506659 1.0855298591607454 0.18967308063398114 0.07043592237731672 0.43024407444176505 12.054733792437528 0.02284162850313027 0.022053359682635127 490.93861379604334 -2.69102719200827 0.06715217165408638 STAQQELDGKPAS(ph)PTPVIVASHTANK ddPTM_BT-474_Trastuzumab_2h_R1 5 STAQQELDGKPASPTPVIVASHTANK 26 1 P35606;P35606-2;H0YAC7 P35606 COPB2 Coatomer subunit beta 1 STAQQELDGKPAS(0.796)PT(0.204)PVIVASHTANK;STAQQELDGKPAS(0.953)PT(0.047)PVIVASHTANK;STAQQELDGKPAS(0.998)PT(0.002)PVIVASHTANK;STAQQELDGKPAS(0.5)PT(0.5)PVIVASHTANK;STAQQELDGKPAS(0.997)PT(0.003)PVIVASHTANK 246.32 1.282e-45 4933530000.0 1717500.0 1364827.0 1019830.0 932565.0 903489.0 1353292.0 1278160.0 1298309.0 2245530.0 1237863.0 True False 1708253.1708321897 1410254.441639657 1163413.1994787317 1050627.6333819556 1018542.9687511422 1259742.1093467078 1216330.5177546386 1395195.4102595171 1692149.22006041 1158861.5235521663 1.4740787713755625 1.2169309386654894 1.003927713392894 0.9066032584821265 0.8789168921831861 1.0870514584739341 1.0495909071398946 1.2039362614982119 1.4601824166821926 1.0 20.14427675325246 -0.2635961380130398 7.52151081127937 0.9999999999999889 1.1255920313726158 0.0398257615147376 0.19461315684324132 0.0 0.0 0.1963642839162836 0.04628350558001489 0.5450092358440569 0.2635961380130398 0.12559203137262687 STAQQELDGKPAS(ph)PTPVIVASHTANKEEK ddPTM_BT-474_Trastuzumab_2h_R1 6 STAQQELDGKPASPTPVIVASHTANKEEK 29 2 P35606;P35606-2;H0YAC7 P35606 COPB2 Coatomer subunit beta 1 STAQQELDGKPAS(0.966)PT(0.034)PVIVASHTANKEEK;STAQQELDGKPAS(0.996)PT(0.004)PVIVASHTANKEEK;STAQQELDGKPAS(0.996)PT(0.004)PVIVASHTANKEEK;STAQQELDGKPAS(0.994)PT(0.006)PVIVASHTANKEEK;STAQQELDGKPAS(0.996)PT(0.004)PVIVASHTANKEEK;STAQQELDGKPAS(0.966)PT(0.034)PVIVASHTANKEEK 232.27 4.7098e-36 67137240000.0 2990900.0 2005192.0 1671799.0 1758641.0 1568403.0 2581798.0 2609967.0 2443092.0 4600730.0 2614028.0 True False 2974797.326720232 2071933.6035558414 1907173.7676625962 1981284.7702824767 1768129.8253970994 2403324.381158768 2483712.925167831 2625407.930809807 3466941.738123528 2447198.4950580364 1.215592986317885 0.8466553112630549 0.7793294134145693 0.8096134311473127 0.7225118146189312 0.9820716979076812 1.0149209106590795 1.0728218148677573 1.416698214356048 1.0 21.222699694125925 1.899639271652367 1.6058863193660022 1.1953198747130862 0.8707420933640758 0.36972025961322064 0.1606484315069459 0.3775289666055946 1.8204967489987105 0.1097469503013817 0.049213471754186576 79.36687334948991 -1.899639271652367 -0.3245777813490104 STAQQELDGKPASPT(ph)PVIVASHTANK ddPTM_BT-474_Trastuzumab_2h_R1 1 STAQQELDGKPASPTPVIVASHTANK 26 1 P35606;P35606-2;H0YAC7 P35606 COPB2 Coatomer subunit beta 1 STAQQELDGKPAS(0.335)PT(0.665)PVIVASHTANK 303.18 1.2280999999999995e-70 1066500000.0 990890.0 608930.0 654690.0 505780.0 566500.0 850710.0 770020.0 811810.0 1246600.0 854460.0 True False 985555.1583382285 629197.8669440418 746864.6613325076 569811.6961412083 638640.4170914338 791902.4200559368 732771.1908379429 872391.3844876532 939392.133584189 799927.6312599889 1.2320554007940099 0.7865684873930087 0.93366528689114 0.7123290581220224 0.7983727429011209 0.9899675784528016 0.9160468549932874 1.090587886198561 1.1743463994418164 1.0 19.609509961005628 1.7870617137813414 2.6418736710298223 1.1051661657358927 0.892276737892643 0.2477408202915763 0.13973490919780443 0.3258274593815208 4.42004896458658 0.08109103490219324 0.038235790621263005 61.24374136532496 -1.7870617137813414 -0.2128894278432497 STAS(ph)PASTK ddPTM_BT-474_Trastuzumab_2h_R1 6 STASPASTK 9 0 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 STAS(0.977)PAS(0.023)TK;STAS(0.979)PAS(0.019)T(0.002)K;STAS(0.999)PASTK;STAS(1)PASTK;STAS(1)PASTK;STAS(1)PASTK 202.31 2.1043e-05 4427430000.0 7587950.0 6448100.0 5666400.0 5200100.0 5733090.0 4951440.0 7616800.0 6962350.0 9589870.0 7751590.0 True False 7547097.320300497 6662721.110541234 6464179.866768272 5858432.126821735 6463165.028813298 4609158.607236035 7248346.284998374 7481915.911096947 7226575.036174402 7256876.889729923 1.0399924698986283 0.9181251400268964 0.890766091941908 0.8072938559992254 0.8906262469410358 0.6351435579345446 0.9988244798883634 1.031010450471539 0.9958243947064329 1.0 22.790917364775506 2.039356625575981 24.999991950103045 1.013023038994868 0.8619425116459118 0.34782686401818974 0.0957731756280013 168.9531641660137 107321.21842111851 0.03644167785129433 0.026913929628705816 109.4855049216992 -2.039356625575981 -0.15108052734895616 STAYEDYYYHPPPR ddPTM_BT-474_Trastuzumab_2h_R1 6 STAYEDYYYHPPPR 14 0 O43390;O43390-3;B4DT28;A0A286YEZ8;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;;;; 206.53 1.0706e-08 8391870000.0 2178190.0 2741250.0 2601140.0 2637620.0 2511390.0 2990340.0 2812100.0 2305250.0 3092330.0 2725170.0 False True 2166462.867059662 2832490.8491293835 2967357.902485813 2971542.421558727 2831200.630325256 2783624.8343031933 2676067.9797347863 2477279.4608223145 2330266.706599064 2551247.317464584 0.8491779108317422 1.1102376589441347 1.1631008417618867 1.16474102734651 1.109731938155995 1.091083884830713 1.0489253477762588 0.9710071790626013 0.9133833049611477 1.0 21.282771329646323 1.823878539812697 2.427196581718728 0.9523213392814405 1.091066240660288 0.27633319013199575 0.08589754231305945 0.3444677627903105 3.823809054699629 0.05219438781581447 0.02475591068506973 66.66203078282888 -1.823878539812697 0.13874490137884754 STDEPSEKDALQPGR ddPTM_BT-474_Trastuzumab_2h_R1 5 STDEPSEKDALQPGR 15 1 P09467;A0A3B3IUC7;Q5VZC3 P09467 FBP1 Fructose-1,6-bisphosphatase 1 0 ;;;; 235.22 1.0282999999999997e-17 2258130000.0 1989492.0 2050610.0 1918001.0 1917663.0 1764226.0 2033052.0 2150380.0 2068390.0 3220570.0 2320320.0 False True 1978780.796125342 2118863.3142300793 2188038.869236452 2160438.9391775825 1988889.7237132445 1892511.90052963 2046357.9041506667 2222743.7648716033 2426903.6769270315 2172235.191074105 0.9109422424681806 0.9754299732076273 1.0072753071247929 0.994569532827295 0.9155959409394332 0.8712278984826868 0.9420517228333845 1.0232518900370653 1.117237989191677 1.0 21.050748883620624 1.603373111848834 3.9506109646096235 1.0616284288004374 0.9469369722838884 0.5042244333847996 0.04675358273447836 0.14670929077243441 5.268084970693243 0.029594627229645728 0.012987907540447156 40.121125893603185 -1.603373111848834 -0.114691456516549 STDSEVSQS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 3 STDSEVSQSPAK 12 0 O75175;H7C3F5;A0A2H2FJL5;B7Z6J7;A0A0G2JNJ7;H7C148 O75175 CNOT3 CCR4-NOT transcription complex subunit 3 1 STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK 238.01 4.2127e-16 1287420000.0 2913730.0 2077020.0 1961460.0 1810850.0 1938980.0 3071190.0 3141400.0 2621500.0 4225410.0 3218520.0 True False 2898042.801425837 2146152.355114897 2237616.518684049 2040103.424329368 2185897.609765134 2858885.8641036223 2989438.480686625 2817129.6417072737 3184114.3230931913 3013111.2980863946 0.9618107380455423 0.7122711850962501 0.7426265734376103 0.6770753624750016 0.7254619539455386 0.9488152216346207 0.9921433976186661 0.9349570470551196 1.0567529732855867 1.0 21.522822533405478 2.671792422962879 4.846508456716394 0.9822222961814966 0.7549691181206021 0.6727451836899554 0.07770364838700357 0.13038640308160895 6.048699266895249 0.025382923724417777 0.02407549154057612 469.6695699005061 -2.671792422962879 -0.2272531780608945 STEDGAELEEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 STEDGAELEEQK 12 0 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 0 ; 81.017 0.018781 1083910000.0 703520.0 989190.0 972440.0 913160.0 959860.0 946530.0 932230.0 871050.0 826070.0 1087760.0 False True 699732.3264884197 1022114.591172018 1109351.099399998 1028765.962371596 1082092.4814640505 881098.6089919545 887134.4734355687 936052.1741022774 622496.1172708897 1018338.225521811 0.6871315531044382 1.0037083608918558 1.0893739148715063 1.010239954259246 1.0626061698799245 0.8652317932388985 0.8711589638903994 0.9191957550475245 0.6112862128414298 1.0 19.95778537950048 2.6235895411209906 7.557861044284885 0.8547909237949792 0.9810637139182353 0.15069246736288988 0.13819100468185921 0.5089501709864599 30.319865898778325 0.0443444126322633 0.04174973477223481 420.329180554447 -2.6235895411209906 0.1262727901232561 STEESLSEDVFTES(ph)ELSPIREELVSSDELR ddPTM_BT-474_Trastuzumab_2h_R1 1 STEESLSEDVFTESELSPIREELVSSDELR 30 1 Q8N573-2;Q8N573-3;Q8N573-5;Q8N573-8;Q8N573;H0YC07 Q8N573-2 OXR1 Oxidation resistance protein 1 1 S(0.015)T(0.015)EES(0.077)LS(0.073)EDVFT(0.07)ES(0.374)ELS(0.374)PIREELVS(0.001)S(0.001)DELR 44.534 0.073586 15436000.0 5303.0 8388.5 4502.2 4709.0 5328.3 6904.9 6024.5 5572.7 4737.6 5774.3 True False 5274.449237218687 8667.706151544664 5136.070626176081 5305.158917175353 6006.827421691593 6427.580515386249 5733.071919175073 5988.563171597223 3570.081960587564 5405.779230373056 0.9757056314071292 1.6034147496893802 0.9501073586798396 0.9813865293217388 1.1111862260192706 1.189020165542846 1.0605449602830768 1.107807573411382 0.6604194896692425 1.0 12.40028687871197 1.3282318658911936 8.045823030618958 0.8320296893878787 1.1270411381752097 0.27023166007787713 0.19203323869714523 0.28284453372224216 21.639340014630935 0.12476625950043041 0.04538922241150894 21.292755435041606 -1.3282318658911936 0.295011448787331 STELDSNWNWFQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 STELDSNWNWFQLR 14 0 Q8N6H7;G5E9L0;A0A0D9SF70;E9PQP3;E9PIY6;H0YF45;E9PJT7;E9PK28;E9PN48;H0YDX1;E9PMR9;E9PM63 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 0 149.23 1.755e-05 156090000.0 226240.0 177170.0 242260.0 200800.0 171570.0 210150.0 254440.0 220420.0 282800.0 241100.0 False True 225021.94897762727 183066.9963484733 276368.1022383318 226221.25941151223 193418.422524938 195622.82513988938 242131.76514480932 236868.85967008103 213107.72932585352 225712.79158390523 0.996939284648291 0.8110616818117771 1.2244237479806113 1.002252720477377 0.8569227342750653 0.8666891396235717 1.0727427694535452 1.0494259452815669 0.9441544177908677 1.0 17.784128655623775 -1.2896629028819246 5.9899749876037305 1.0000008218957304 0.9852185101550248 0.0010784958909487719 0.11487195292933869 1.260238701152426e-06 1.4935809392586106e-07 0.11117720515413539 0.02620326167802071 0.05132596188641368 1.2896629028819246 -0.014782311740705545 STELLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 STELLIR 7 0 K7EK07;Q71DI3;Q16695;P84243;P68431;Q6NXT2;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q5TEC6 K7EK07;Q5TEC6 H3F3B;HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C 0 ; 117.17 0.01231 216499000.0 283540.0 360570.0 366480.0 373520.0 401750.0 405960.0 360550.0 371450.0 507440.0 384800.0 False True 282013.45214425575 372571.35448083206 418077.1984987358 420807.59370213177 452910.4811411887 377896.9407270497 343108.81906524574 399169.48518488166 382388.2113476342 360241.73455614556 0.7828450317998967 1.034225962019303 1.160546262119933 1.1681256038271344 1.2572404518849558 1.04900933033941 0.952440503563505 1.1080600799257727 1.0614767104060705 1.0 18.45860580379129 4.707588227501344 3.3043728996663413 1.0982040896648229 0.7503699187019225 0.5556555274525949 0.0831819102085948 0.222626045109663 4.050830822181448 0.021538690825309965 0.18853140343206057 51002.11985356757 -4.707588227501344 -0.34783417096290037 STETSDFENIES(ph)PLNER ddPTM_BT-474_Trastuzumab_2h_R1 2 STETSDFENIESPLNER 17 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER 337.95 2.8092999999999993e-72 315330000.0 369270.0 385100.0 361830.0 321230.0 333330.0 390970.0 364450.0 317510.0 347630.0 396570.0 True False 367281.89134975424 397917.820702134 412772.51891726017 361897.68506354606 375777.5996983015 363943.16414438444 346820.16116579867 341204.20848311164 261961.2445033466 371260.56307934114 0.9892833440304387 1.0718020179727412 1.11181353466042 0.9747808441108404 1.012166755826406 0.9802903953108725 0.9341691406412068 0.9190424257644455 0.7055994375771162 1.0 18.50207254839166 2.2476221529387987 1.0937015998391963 0.8623193292829919 1.042666165984417 0.4450938819944983 0.07721392887675445 0.44066837974814405 1.0122393192077874 0.0511421766522647 0.02909893788297693 176.8569588994287 -2.2476221529387987 0.18034683670142504 STFREES(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 6 STFREESPLR 10 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR 171.2 2.4796e-06 17285540000.0 6059520.0 8070260.0 8175950.0 9179990.0 7677000.0 7977710.0 9436620.0 7463200.0 10891100.0 8931970.0 True False 6026896.217595957 8338873.72552482 9327052.693368647 10342175.792754415 8654620.44485602 7426229.685209345 8980134.639210874 8020141.881361706 8207134.3382630935 8361924.027555749 0.720754720771801 0.997243421256284 1.115419449235897 1.2368177178688753 1.035003477230327 0.8881005927268734 1.0739316226287017 0.9591263750940885 0.9814887472329856 1.0 22.995403505128316 4.726542387034746 4.127304146954227 1.0356782815164096 0.6978922469967226 0.5238989605991371 0.08959640823940798 0.17805825031193026 6.676738269964674 0.023285354435965477 0.1751867864731948 53277.32203209457 -4.726542387034746 -0.33778603451968703 STFS(ph)PAPRPEMPGTVEVESTFLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 STFSPAPRPEMPGTVEVESTFLAR 24 1 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 ST(0.002)FS(0.998)PAPRPEMPGTVEVESTFLAR;S(0.003)T(0.018)FS(0.979)PAPRPEMPGTVEVESTFLAR;ST(0.003)FS(0.997)PAPRPEMPGTVEVESTFLAR;ST(0.004)FS(0.996)PAPRPEMPGTVEVESTFLAR 213.84 2.2625e-26 985018000.0 311364.0 322801.0 283872.0 311867.0 316952.0 335919.0 352740.0 313687.0 363642.0 335919.0 True False 309687.6508197923 333545.23614767514 323838.7101403439 351349.33022355614 357313.95847831306 312697.7101982699 335676.6186023427 337095.9168103103 274027.3016531543 314480.361825275 0.9847599036783559 1.0606234176650833 1.0297581326247276 1.117237744780914 1.1362043607569885 0.9943314373697029 1.0674008915979445 1.0719140452960954 0.8713653853063283 1.0 18.262610403204707 1.2542644058910284 24.99973267212537 0.9356826903671253 1.060431807609408 0.45538093985629635 0.05334665693402367 170.66365424194692 271691.2111249943 0.034773158888980395 0.012605805336271966 17.95826623972302 -1.2542644058910284 0.12474911724228266 STFS(ph)PISDIGLAK ddPTM_BT-474_Trastuzumab_2h_R1 1 STFSPISDIGLAK 13 0 Q8TEK3;Q8TEK3-1;H7C2S2 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific 1 STFS(0.917)PIS(0.083)DIGLAK 150.22 4.6298e-05 24108000.0 77792.0 80898.0 70192.0 71899.0 63972.0 84066.0 87942.0 76649.0 103220.0 90095.0 True False 77373.17651550377 83590.64102612622 80074.42348019894 81001.40602802954 72118.45500824937 78254.71529007812 83687.90948893578 82368.93759573558 77782.81407713791 84345.05996578973 0.917340939076767 0.9910555646060422 0.9493670822295585 0.9603574419282366 0.8550406513137881 0.9277925147224765 0.9922087852315182 0.9765709767607533 0.9221976261406009 1.0 16.364015952845175 2.2514318710429664 24.962589799867317 0.9721760010564959 0.9344856009370381 0.20362152530219602 0.037991908857714106 397.65561135698994 771214.7629338874 0.013794280487130363 0.011471466988349771 178.41520817945622 -2.2514318710429664 -0.03769040011945779 STFS(ph)TNYR ddPTM_BT-474_Trastuzumab_2h_R1 1 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 1 S(0.001)T(0.02)FS(0.723)T(0.256)NYR 118.91 0.001884 234440000.0 125670.0 100860.0 97011.0 113520.0 84060.0 133240.0 105440.0 101900.0 168550.0 107610.0 True False 124993.40668324972 104217.06412884258 110669.30556527186 127891.62036053203 94764.54273734492 124029.432413223 100339.46438008452 109504.29543771538 127013.11095428781 100742.23767044398 1.2407249389490245 1.0344922501102838 1.0985392832676806 1.2694935442957032 0.9406634687562354 1.231156218893588 0.9960019421875753 1.0869750163375818 1.2607731760910772 1.0 16.620309155812567 3.2569561877987487 24.999963957543322 1.0904229287639724 1.1473414412398406 0.09025672938987317 0.11274516969581179 796.9286647993873 1083034.676623687 0.029736635705214506 0.04019129887047631 1806.9918250924616 -3.2569561877987487 0.05691851247586821 STFSTNYR ddPTM_BT-474_Trastuzumab_2h_R1 6 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;; 186.09 0.000487 8125200000.0 4125300.0 4609000.0 5260140.0 3835140.0 3191150.0 3998620.0 4348260.0 3514610.0 7009340.0 4369960.0 False True 4103089.8431639187 4762407.778800663 6000721.990043496 4320668.330774242 3597524.0370720704 3722204.8111390113 4137918.051833709 3776888.0450279634 5281982.077343983 4091065.4114890196 1.0029391932089697 1.1640996414836826 1.466787104696872 1.0561230134918949 0.8793611627350354 0.909837520731365 1.0114524300230234 0.923204022703048 1.2911018392691762 1.0 21.964045173789536 3.492073213150549 24.784296773183588 0.9881408752034179 1.215707312227767 0.2762390895001392 0.15020830053564177 715.7472025714336 1186417.6015991527 0.04006552357906946 0.05975981109933075 3105.082997376385 -3.492073213150549 0.2275664370243492 STFVLDEFKR ddPTM_BT-474_Trastuzumab_2h_R1 2 STFVLDEFKR 10 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 126.03 0.00063095 2709900000.0 3016700.0 2514400.0 1889260.0 1743450.0 1330100.0 1785620.0 1626470.0 1702170.0 3168700.0 2439000.0 False True 3000458.4223868796 2598090.284013105 2155251.386257703 1964170.591240043 1499480.3508796399 1662184.2922973537 1547791.4323812232 1829194.5688441247 2387816.343404636 2283340.931867043 1.3140650090888808 1.1378459728695434 0.9439025754666415 0.8602178342390505 0.6567045376152146 0.727961501105408 0.6778626050887743 0.8011044445072985 1.0457555024216927 1.0 21.122714857704793 4.301997889468331 1.4857308159510232 0.7949564552121485 1.3430941362786577 0.642387334953813 0.1207847573672647 0.3282479772766814 1.1518394721088405 0.03418821967764527 0.21096020987404873 20044.622862986955 -4.301997889468331 0.5481376810665092 STGEPLGHVPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 STGEPLGHVPAR 12 0 Q93052;C9JUT4;C9JE51;C9J2R5;C9JIY7;C9JT42;C9J3U9;C9J1K7;C9J5C8;C9J4E3 Q93052 LPP Lipoma-preferred partner 0 ;;; 110.66 0.0014657 1592310000.0 1388710.0 1404910.0 1425320.0 1359910.0 1402050.0 1541570.0 1612040.0 1356740.0 1802070.0 1641000.0 False True 1381233.3396601854 1451671.5800639694 1625992.6668964692 1532074.4665652846 1580592.7568985797 1435004.8943654497 1534059.4666091774 1457986.8281861253 1357973.9950008497 1536269.9750692176 0.8990824282678265 0.9449325988412703 1.058402945630184 0.9972690291602269 1.0288509067733131 0.9340837988458341 0.9985611197928016 0.9490433659750688 0.8839422868624802 1.0 20.551000338422323 -0.4285577286751566 7.869092210545124 0.9999998009273421 0.9699026339281862 0.031671223439626806 0.052558268520531574 0.0 0.0 0.051141498974825145 0.012054166908381247 0.37277113097730563 0.4285577286751566 -0.030097166999155878 STGS(ph)PTQETQAPFIAK ddPTM_BT-474_Trastuzumab_2h_R1 5 STGSPTQETQAPFIAK 16 0 O15231-3;H0Y704;O15231-2 O15231-3 ZNF185 Zinc finger protein 185 1 STGS(1)PTQETQAPFIAK;STGS(1)PTQETQAPFIAK;STGS(0.999)PT(0.001)QETQAPFIAK;STGS(1)PTQETQAPFIAK;STGS(1)PTQETQAPFIAK 370.52 2.7403999999999993e-104 3177410000.0 2198130.0 2004500.0 1878670.0 1811290.0 1674740.0 2557120.0 2600570.0 2207950.0 2844060.0 2525100.0 True False 2186295.5123152034 2071218.5707541595 2143170.4063076326 2040599.1282842539 1888008.212038321 2380352.3132130094 2474770.4939578585 2372718.440742921 2143179.5214515086 2363945.9561531255 0.9248500400884737 0.8761700179155854 0.9066071924060551 0.8632173349702726 0.7986680943885438 1.006940242020838 1.0468811638930524 1.0037109497224173 0.906611048308028 1.0 21.172765622741007 2.7168617625497404 24.90816269957932 0.9984460863354042 0.8752518096740074 0.633770560442731 0.04509523321904058 492.4579590075465 565292.912755466 0.014981253027420201 0.014136067666678579 521.0288394085583 -2.7168617625497404 -0.12319427666139682 STGVFQDEELLFSHK ddPTM_BT-474_Trastuzumab_2h_R1 2 STGVFQDEELLFSHK 15 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;B1AP61;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 0 ; 140.77 4.8806e-06 206682000.0 217912.0 204375.0 197405.0 175611.0 186943.0 230671.0 196458.0 193397.0 271270.0 245420.0 False True 216738.7860042994 211177.4983277038 225197.908124981 197843.33459419842 210749.082952028 214725.25671112692 186954.57599755932 207829.2661900671 204419.14333176886 229757.08548536693 0.9433388552367555 0.9191337794070057 0.9801565320575226 0.8610978598385769 0.9172691345157686 0.9345751242339929 0.8137053775843893 0.9045608571810666 0.8897185603653045 1.0 17.809749827951027 3.7381825168718947 24.999997905138724 0.8960225085717314 0.9447021267542904 0.14316396435492462 0.047718070016058795 56.341947625936015 3725345.0125570456 0.011801376739113476 0.019612683282569168 5472.459004797796 -3.7381825168718947 0.04867961818255906 STHDHWK ddPTM_BT-474_Trastuzumab_2h_R1 2 STHDHWK 7 0 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ; 80.462 0.029846 213620000.0 152683.0 214961.0 227700.0 222570.0 196252.0 206474.0 239400.0 58258.0 265400.0 204245.0 False True 151860.97169267607 222115.84693833135 259758.18079612046 250747.33917938385 221243.52892326252 192200.938367516 227819.30740318898 62605.50778812979 199995.7261777985 191209.90923705816 0.794210782791607 1.161633556673868 1.3584974849503095 1.3113720945733645 1.1570714603968002 1.0051829381354351 1.191461824924268 0.3274176952331103 1.0459485440675977 1.0 17.544797765729946 1.7788190938573294 24.999999999998817 0.7207137235698058 1.1512327639775815 0.30064607428382994 0.23613969409543173 55.273027907456765 34336.886402007694 0.10637070488080372 0.059106302865166514 60.09233696376319 -1.7788190938573294 0.43051904040777567 STHHLASHGFYEFLNWFDER ddPTM_BT-474_Trastuzumab_2h_R1 1 STHHLASHGFYEFLNWFDER 20 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 0 88.01899999999998 0.00079275 145060000.0 19492.0 41464.0 58085.0 42296.0 57217.0 47355.0 54163.0 12430.0 32801.0 34056.0 False True 19387.057237764795 42844.10417448269 66262.86311612933 47650.66926329343 64503.24579827114 44081.46031167952 51542.92876724697 13357.589718261077 24717.63306088161 31882.516923191517 0.6080780035174245 1.3438118539291874 2.078344795543082 1.4945705001298712 2.02315413032373 1.3826217176603903 1.6166518123841838 0.41896283629178266 0.7752723262228356 1.0 14.960477905028231 1.7530094682326687 14.773720939321038 0.7006938920890831 1.5370927034297266 0.4336924344687966 0.4045024543822108 0.23280156574849054 236.65765427924725 0.18955353010380518 0.10460195678765338 56.62516339885126 -1.7530094682326687 0.8363988113406435 STHQCWK ddPTM_BT-474_Trastuzumab_2h_R1 1 STHQCWK 7 0 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 62.464 0.085299 437470000.0 204100.0 320460.0 362930.0 395690.0 322470.0 367860.0 344180.0 204310.0 364340.0 399860.0 False True 203001.14827764154 331126.317377839 414027.3893558891 445784.3134289899 363534.6430705646 342430.7040492964 327530.6985047186 219556.64966515827 274553.2889058748 374340.5924626306 0.5422899689883527 0.8845589392256317 1.1060178823572824 1.1908521875663038 0.9711333753014116 0.914757071352021 0.8749537322416219 0.5865157401733717 0.7334317849413639 1.0 18.513991973033328 1.9623377400626107 6.821663875541169 0.7272247320402622 0.949317073010228 0.11342064667826346 0.18674095474484764 0.3473250855817498 48.51935234083063 0.08210384156600646 0.052079704583906136 91.6933289232753 -1.9623377400626107 0.22209234096996588 STHSELLEDYYQSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 STHSELLEDYYQSGR 15 0 A0A3B3ITW3;P28288 A0A3B3ITW3 ABCD3 ATP-binding cassette sub-family D member 3 0 176.23 8.106699999999998e-07 160220000.0 61035.0 107800.0 111340.0 100290.0 132300.0 148470.0 108720.0 77375.0 119060.0 108710.0 False True 60706.39434162597 111388.05783352396 127015.70421537125 112986.70371703454 149147.62079646374 138206.6183607869 103460.79824926784 83149.11540228891 89719.25832226334 101772.0347286866 0.5964938649744279 1.094485907945858 1.2480413165952866 1.1101940136919248 1.4655069164537724 1.3580019180045975 1.0165935910103723 0.817013392961589 0.8815708417488687 1.0 16.63498166157879 2.002347984437767 24.798746297288826 0.8885980218257198 1.1629581651991618 0.20006876193183898 0.21971695548318154 97.20494815091136 1026639.7873158008 0.08632490300390629 0.06335622088359759 100.54210751026497 -2.002347984437767 0.27436014337344206 STIGGQIMYLTGMVDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 STIGGQIMYLTGMVDKR 17 1 P15170-2;P15170-3;P15170;H3BR35;H3BSV8 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 ; 250.47 4.1286e-21 1290950000.0 379920.0 484280.0 481110.0 478230.0 424800.0 498180.0 511420.0 443790.0 665970.0 534000.0 False True 377874.5529330798 500398.96704655845 548846.1061169149 538773.868965974 478895.76201313536 463741.98918957874 486680.66078587755 476907.86331995804 501850.61704080144 499919.6628195985 0.7558705548844153 1.000958762502472 1.0978686115712397 1.0777209000486871 0.9579454412977354 0.9276330252225449 0.9735177409125065 0.9539690050000204 1.0038625290517924 1.0 18.931336746596163 4.739198041531178 24.26583048603774 0.9966704511270991 0.7558704431193842 0.676088821093132 0.05051405685417686 23.48874109400507 893875.892150814 0.013678957144672618 0.081797562918337 54852.70403303844 -4.739198041531178 -0.24080000800771484 STIGVMVTAS(ph)HNPEEDNGVK ddPTM_BT-474_Trastuzumab_2h_R1 20 STIGVMVTASHNPEEDNGVK 20 0 O95394-4;O95394;A0A494C0G1;O95394-3;H0Y987;A0A494C099;A0A494C163;D6RCQ8;D6RF77;D6RC77 O95394-4 PGM3 Phosphoacetylglucosamine mutase 1 STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.012)AS(0.988)HNPEEDNGVK;STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVT(0.003)AS(0.997)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVT(0.004)AS(0.996)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVT(0.003)AS(0.997)HNPEEDNGVK;STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.014)AS(0.986)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK 318.32 9.665599999999997e-67 49266420000.0 33208040.0 25093170.0 23298820.0 22696350.0 20651220.0 29967480.0 29053220.0 28225770.0 45499740.0 30181940.0 True False 33029251.6024001 25928380.99430839 26579091.339026216 25569705.58289079 23281030.45762925 27895898.643460024 27647804.754521642 30332120.28495593 34286938.74227968 28255702.749141116 1.1689410769797288 0.9176335561180311 0.940662901751192 0.9049396438624422 0.8239409461630509 0.9872661420289033 0.9784858299219632 1.0734866711420912 1.2134519904418903 1.0 24.75203873519434 1.7189884462150142 2.730912309011338 1.1159710428307112 0.9486152105778088 0.2954899007184536 0.09586945188136613 0.2666809832816574 4.28316508098876 0.05819476956952984 0.025980204548059934 52.35865071285605 -1.7189884462150142 -0.1673558322529024 STKPGAAPTEHK ddPTM_BT-474_Trastuzumab_2h_R1 3 STKPGAAPTEHK 12 1 Q8N163-2;Q8N163;H0YB24;G3V119 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 ;; 138.94 3.9412e-05 950050000.0 1345880.0 1212490.0 1136930.0 1109860.0 1137290.0 1475410.0 1465330.0 1346530.0 1950800.0 1431320.0 False True 1338633.9316213243 1252846.9966843168 1296999.8616272872 1250368.16220349 1282117.1402540447 1373418.37944156 1394446.3897958004 1447014.9061407966 1470051.4793807461 1339971.932185295 0.9990014712011254 0.9349800295004013 0.9679306188989147 0.9331301142736068 0.9568238777681725 1.0249605580929735 1.0406534318384308 1.079884489655638 1.0970763223251332 1.0 20.353771350812313 2.521419943497023 2.0740041851916216 1.0641509716515074 0.9554323161714963 0.6992315137994494 0.029814911269673325 0.15734254944564818 1.3608355514937358 0.011353840721469 0.009626304318927423 332.2155399801599 -2.521419943497023 -0.10871865548001114 STKPNSSTPAS(ph)PPGTASGR ddPTM_BT-474_Trastuzumab_2h_R1 3 STKPNSSTPASPPGTASGR 19 1 Q8WV28-3;Q8WV28 Q8WV28-3 BLNK B-cell linker protein 1 STKPNSST(0.001)PAS(0.998)PPGT(0.001)ASGR;STKPNSS(0.001)T(0.007)PAS(0.981)PPGT(0.008)AS(0.001)GR;STKPNSSTPAS(0.996)PPGT(0.004)ASGR 118.57 4.6462e-05 973110000.0 539260.0 518660.0 506190.0 463280.0 455120.0 605420.0 550880.0 463270.0 579170.0 512330.0 True False 536356.6840774189 535923.2845634088 577457.1521176465 521931.20049883093 513076.8342924153 563568.7404053856 524231.82983403775 497841.5598373942 436441.31398039043 479632.66077221977 1.1182655560066992 1.1173619488309237 1.20395710998481 1.0881894482717451 1.0697287241997857 1.17500075891001 1.0929860968809177 1.037964260056556 0.9099491124680912 1.0 18.871570377412812 1.5796226148119388 2.510994703392829 0.9566370229039816 1.1263962564775132 0.7102117546586134 0.043286480286586465 0.12874067905526532 1.8070853387248562 0.0307866129822244 0.011498017805645596 37.9859169867095 -1.5796226148119388 0.16975923357353162 STLESEKPGS(ph)PEAAET(ph)SPPSNIIDHCEK ddPTM_BT-474_Trastuzumab_2h_R1 2 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 2 STLESEKPGS(1)PEAAET(0.612)S(0.388)PPSNIIDHCEK;STLES(0.003)EKPGS(0.996)PEAAET(0.612)S(0.385)PPS(0.003)NIIDHCEK 143.88 1.6322999999999996e-06 630170000.0 780770.0 542390.0 522730.0 469610.0 513760.0 707350.0 689580.0 778560.0 1126280.0 770310.0 True False 776566.4210717021 560443.1232683215 596325.8403493895 529062.5778498019 579184.2907059051 658452.5594227964 656222.3809485845 836660.1006475743 848723.3853787916 721148.1563044298 1.0768472667964193 0.7771539292845848 0.8269116895553054 0.7336392296432084 0.8031418865077217 0.9130614197186318 0.9099688811678289 1.1601778266134561 1.1769057134225085 1.0 19.459936158879074 1.887069363574418 2.939317297283525 1.1283574125013274 0.8438418206883251 0.5688492772080992 0.09939311176473767 0.17183367532412783 2.6220283158877806 0.05231659960931726 0.02747394060882743 77.10266041554921 -1.887069363574418 -0.28451559181300223 STLESEKPGS(ph)PEAAETS(ph)PPSNIIDHCEK ddPTM_BT-474_Trastuzumab_2h_R1 1 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 2 S(0.001)T(0.001)LES(0.004)EKPGS(0.995)PEAAET(0.197)S(0.803)PPSNIIDHCEK 115.2 0.00049057 349180000.0 423930.0 283380.0 266130.0 267700.0 277690.0 409810.0 378420.0 379690.0 627990.0 368270.0 True False 421647.6079830511 292812.1319931729 303598.79075657256 301590.7925521009 313052.17550241883 381480.79928897414 360114.37889521633 408024.39582675375 473230.2791348751 344766.6933081908 1.2229940309406153 0.8493051610743179 0.8805919964118524 0.8747677731227521 0.9080116541958941 1.106489712299338 1.0445161492827444 1.1834797378818034 1.372610197910995 1.0 18.39526088192628 2.2541628207859836 1.4379313415457302 1.1955214293932062 0.9372278222017983 0.33810634421082 0.13541925281649655 0.42102783827088414 1.7122868170988352 0.07649454018224552 0.045828993669737264 179.54066142562175 -2.2541628207859836 -0.2582936071914078 STLHNWMSEFKR ddPTM_BT-474_Trastuzumab_2h_R1 1 STLHNWMSEFKR 12 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 103.88 0.001427 118760000.0 199470.0 272290.0 294050.0 263140.0 255110.0 343790.0 277530.0 233190.0 414610.0 324150.0 False True 198396.07568320018 281353.0080472193 335449.6840715816 296453.49701964774 287596.74634456413 320024.6064946111 264104.81363244413 250591.82191482704 312434.9209893638 303462.46948122274 0.6537746694751533 0.9271426826790141 1.1054074813437123 0.9769033301760279 0.9477176760481074 1.0545772168851777 0.8703047005579913 0.8257753334151025 1.0295669231304936 1.0 18.21115857760191 4.725372847174439 4.597783364794822 0.9622705015594611 0.6374930055602999 0.5916151567214749 0.0791799108992916 0.13712779007024822 7.5935193467834505 0.02101170736098349 0.14028828990006806 53134.04107790188 -4.725372847174439 -0.3247774959991613 STLINSLFLTDLYPER ddPTM_BT-474_Trastuzumab_2h_R1 3 STLINSLFLTDLYPER 16 0 Q15019-2;Q15019-3;Q15019;B5MCX3;C9J2Q4;C9J938;C9JB25;C9IY94;C9IZU3;C9JQJ4;A0A1B0GXJ2;C9JZI2;B5MD47;F8WB65;C9JFT1 Q15019-2 SEPT2 Septin-2 0 ;; 223.72 1.9686e-14 264100000.0 153465.0 181496.0 191436.0 165342.0 157249.0 179502.0 194592.0 189443.0 187750.0 176914.0 False True 152638.76149156442 187536.98464335097 218388.52480845878 186274.28024710287 177273.72806215505 167093.44924225728 185178.84154637172 203580.19863206218 141481.52822110654 165623.1970563043 0.9216025545001055 1.1323111012015845 1.3185865789936217 1.1246871426094869 1.0703435944536808 1.0088770909636116 1.1180731010971814 1.2291768438865132 0.8542373938899953 1.0 17.33754522417232 3.292640350993637 5.636219634779241 1.07275486771343 1.139757387631892 0.055182553634861686 0.12781992889602814 0.6825271282391944 45.707473528349894 0.037033077790987634 0.04979661502427782 1961.7350471689576 -3.292640350993637 0.06700251991846207 STLINSLFLTDLYS(ph)PEYPGPSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 STLINSLFLTDLYSPEYPGPSHR 23 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1;A0A5F9ZGZ7 E7EPK1 SEPT7 Septin-7 1 STLINSLFLTDLYS(0.999)PEYPGPSHR;STLINSLFLTDLYS(1)PEYPGPSHR 172.83 2.9317e-12 368820000.0 124947.0 140389.0 124305.0 129472.0 138705.0 141680.0 149935.0 128990.0 164893.0 156048.0 True False 124274.29923491686 145061.7629980575 141806.06352157114 145863.14192493685 156368.25958105465 131885.995078846 142682.07124267827 138615.88879794825 124257.3296029985 146088.88304058582 0.8506759491096354 0.992969211474887 0.9706834672846062 0.9984547686932054 1.0703638519682093 0.9027791323601672 0.9766798696314142 0.9488462497138714 0.8505597894706187 1.0 17.156486871658036 -0.22129490489078657 7.609624143323289 0.9999999968225175 0.9571784095494983 0.04153181175013054 0.06488248431592215 0.0 0.0 0.06064910016886126 0.014295129894247647 0.6007656528704239 0.22129490489078657 -0.04282158727301921 STLINSLFLTDLYSPEYPGPSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 STLINSLFLTDLYSPEYPGPSHR 23 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1;A0A5F9ZGZ7 E7EPK1 SEPT7 Septin-7 0 ; 220.88 1.8604e-32 2847400000.0 731480.0 945260.0 832790.0 883530.0 833950.0 899550.0 967560.0 822330.0 1034910.0 922300.0 False True 727541.7929550676 976722.4076782638 950039.5932595563 995384.8074096284 940148.5892910872 837366.2258129305 920755.4263618608 883696.4403071306 779870.2975835175 863438.0243792431 0.8426103233965445 1.1312015224027978 1.1002985349673176 1.1528155806263531 1.0888431627353847 0.9698046671212371 1.0663827632838214 1.0234625014834757 0.9032151417517135 1.0 19.71973310253318 1.4345754252824752 4.7411364364993975 0.9521136236838116 1.0567677588425486 0.16226956314434038 0.08719819179966284 0.32640919900265314 13.448595186863006 0.05834817327290309 0.02179687286416081 27.200408430897117 -1.4345754252824752 0.104654135158737 STLPDADRER ddPTM_BT-474_Trastuzumab_2h_R1 4 STLPDADRER 10 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ;;; 127.42 0.00032510000000000004 7383460000.0 6385060.0 6978380.0 6501160.0 5896240.0 5506990.0 6545890.0 6037280.0 5733830.0 7181600.0 6431890.0 False True 6350683.546406851 7210651.159780212 7416466.81890428 6642703.379444885 6208272.53401298 6093388.031667616 5745233.701750729 6161717.510398781 5411790.908509726 6021401.273581922 1.054685322878183 1.1975038420734325 1.2316845335392308 1.1031823121619284 1.0310345137187469 1.0119551504400688 0.9541356638955719 1.0233029207723587 0.8987593855027104 1.0 22.521667832920322 3.218610179967598 2.0433128604628656 0.981478016980557 1.1653151170693798 0.6930246296465243 0.05391615897056549 0.17368921605045018 1.4913114115499568 0.01687644840938429 0.022951892945634978 1654.2844214298425 -3.218610179967598 0.1838371000888228 STLTSR ddPTM_BT-474_Trastuzumab_2h_R1 8 STLTSR 6 0 H0YDZ5;M0R104;Q9Y2N7-4;Q9Y2N7-6;Q9Y2N7-7;Q9Y2N7-5;Q9Y2N7-3;Q9Y2N7-2;Q9Y2N7 H0YDZ5 HIF3A Hypoxia-inducible factor 3-alpha 0 ;;;;;;; 138.07 0.028989 4737920000.0 1712605.0 2287640.0 1997966.0 2136699.0 2331981.0 1571727.0 1978235.0 2131849.0 2366040.0 2018040.0 False True 1703384.524968304 2363782.714492415 2279262.246168211 2407204.8743193164 2628944.9576157094 1463077.2119373907 1882540.2154584266 2290938.3976898766 1782961.1453116778 1889246.9594690336 0.9016208899693211 1.2511771966311636 1.206439547113941 1.2741610419189733 1.3915306013537612 0.7744234837083361 0.9964500437716772 1.212619867512576 0.9437417042675951 1.0 20.849379870263586 2.7501722161491626 24.992978329149267 1.0171072139823936 1.2114758522588047 0.32705184483329386 0.15400757208380159 1044.4212598536267 2248025.9054365307 0.04887481567482655 0.0514639113313133 562.5643615528588 -2.7501722161491626 0.19436863827641115 STLTTLPFPGAEANS(ph)PGKAEAEKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 STLTTLPFPGAEANSPGKAEAEKPR 25 2 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 STLTTLPFPGAEANS(1)PGKAEAEKPR 83.22 0.009955 111140000.0 136910.0 104820.0 102790.0 73335.0 88541.0 162190.0 145800.0 111380.0 240840.0 154780.0 True False 136172.89177213094 108308.87033497191 117261.93853330363 82619.20348079308 99816.17152637707 150978.18705419268 138747.09698991227 119691.74117617999 181488.20909065945 144901.80788617523 0.9397597846335974 0.747463899277584 0.8092510386441586 0.5701737244416782 0.6888538727190051 1.041934460699004 0.9575249544084524 0.8260196537382162 1.2524909919220881 1.0 17.144716069415495 2.7387650601606293 24.99932362562576 0.9852914896451185 0.7440775306447746 0.4902735049590521 0.13296677733190362 18.01505161173534 2202981.726118239 0.04269337054371971 0.04273268206527401 547.9804443062893 -2.7387650601606293 -0.24121395900034392 STMDNPTTTQYASLMHSFILK ddPTM_BT-474_Trastuzumab_2h_R1 2 STMDNPTTTQYASLMHSFILK 21 0 Q9NP97;B1AKR6 Q9NP97 DYNLRB1 Dynein light chain roadblock-type 1 0 ; 292.64 9.096099999999999e-55 759890000.0 755870.0 943880.0 915640.0 974970.0 958480.0 1149320.0 1091410.0 1028850.0 1297570.0 1183400.0 False True 751800.4799050521 975296.4752124902 1044554.1531144463 1098401.1020340745 1080536.746643949 1069870.2136082677 1038614.3287089159 1105628.011394441 977801.2600471991 1107874.3988402875 0.6785972134494938 0.8803312688093717 0.9428452848155674 0.9914491238211394 0.97532423149686 0.9656963052203371 0.9374838246972108 0.997972344655497 0.8825921612330353 1.0 20.07936289977126 4.7861795812355945 1.7351173313328594 0.9651506097098512 0.5567985984819953 0.8713579112100249 0.032977093411052476 0.3132927262273704 0.8528660506219312 0.008066098085937086 0.21958542449656318 61119.470232787426 -4.7861795812355945 -0.4083520112278559 STMGKPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 STMGKPQR 8 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 ;;; 78.334 0.028174 4410150000.0 4612130.0 4561020.0 4483480.0 4458660.0 4122280.0 4217570.0 4857320.0 4280910.0 5338210.0 4680950.0 False True 4587298.8045358155 4712830.79350519 5114715.012893236 5023125.898843297 4647227.923332179 3926019.3129918766 4622352.874835661 4600373.242220518 4022679.6738492404 4382207.763437085 1.0468008483782778 1.0754466807408485 1.16715484271828 1.1462546209592588 1.0604764023527793 0.895899858000478 1.05480002874401 1.0497843759494234 0.9179573153542459 1.0 22.063226454422466 2.995086284155985 23.842195114879512 0.9959180956043893 1.109768999790174 0.5169691167487716 0.05677516751324604 107.0761099274114 519559.5141516112 0.01735788523030957 0.020193936287341317 988.7495165474796 -2.995086284155985 0.11385090418578481 STMKPVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 STMKPVQK 8 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 90.629 0.011911 1002200000.0 1141000.0 1148600.0 1092900.0 908130.0 1047600.0 1241100.0 1316600.0 1221400.0 2081600.0 1334000.0 False True 1134856.982777018 1186830.4566566385 1246770.8203429074 1023099.1648873328 1181005.650388325 1155305.6782351492 1252911.0280995755 1312547.0701435308 1568617.5720109483 1248862.977905142 0.9087121668708934 0.9503288012007871 0.998324750113304 0.8192245130074173 0.945664713649658 0.9250860171810628 1.0032413885798936 1.0509936585238626 1.2560365706750045 1.0 20.252183766093196 1.7667252586824183 2.0304965192308373 1.127933613737732 0.9265450532262554 0.5420126768032026 0.07357148404872843 0.2135545693082128 1.7548313937425062 0.04702703077034594 0.020104501197126663 58.44202540044426 -1.7667252586824183 -0.2013885605114767 STNS(ph)PTIVSPAIVSPTQDSRPNMSRPLITR ddPTM_BT-474_Trastuzumab_2h_R1 2 STNSPTIVSPAIVSPTQDSRPNMSRPLITR 30 2 A0A2U3U043 A0A2U3U043 1 S(0.064)T(0.064)NS(0.869)PT(0.003)IVSPAIVSPTQDSRPNMSRPLITR;S(0.044)T(0.044)NS(0.861)PT(0.051)IVSPAIVSPTQDSRPNMSRPLITR 137.69 8.998200000000002e-07 249850000.0 49521.0 67605.0 60787.0 58673.0 63028.0 60331.0 55805.0 64126.0 68609.0 63656.0 True False 49254.38443830035 69855.1915569145 69345.28122992441 66100.99578412177 71054.24220377565 56160.45997389798 53105.498954197836 68911.40774523014 51701.23126349885 59593.419581356575 0.8265071006885008 1.172196394293981 1.1636399071755674 1.1091995768741059 1.192316915238818 0.9423936462855276 0.8911302510791235 1.1563593468764233 0.8675661109347256 1.0 15.862865413903467 2.724266860681378 24.809897729524526 0.9888856560372631 1.1020342021684675 0.19109349743841464 0.12142591374661611 1320.5408908461782 2292081.3416435625 0.038980656201031 0.03690699945763421 529.9890058981538 -2.724266860681378 0.1131485461312044 STPALFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 STPALFSPK 9 0 C9J3S1;C9K0Q9;K7EKK7;K7EMX4;Q9BZR8-2;Q9BZR8-3;Q9BZR8 C9J3S1 BCL2L14 Apoptosis facilitator Bcl-2-like protein 14 1 STPALFS(1)PK 75.819 0.039002 73769000.0 200430.0 196750.0 204060.0 174710.0 123010.0 171960.0 197870.0 158490.0 303030.0 170190.0 True False 199350.90714986625 203298.70481211322 232789.8742786837 196828.26808657992 138674.5943626079 160072.80995029904 188298.2721631954 170317.32859591278 228352.31689396495 159328.3284930103 1.2511956224947889 1.2759733735676007 1.4610702094254138 1.2353626624233036 0.8703699817493002 1.0046726245378352 1.1818254414905005 1.068970786343149 1.4332185560082789 1.0 17.28164327452596 3.469676709278585 24.994714079546416 1.093030922482272 1.3280936778347694 0.3473204684288087 0.14715414150771927 193.53194595367768 649771.6883534405 0.04077114684798325 0.05531122617465322 2949.0131510306196 -3.469676709278585 0.23506275535249732 STPDGTEHGEFLALDLGGTNFR ddPTM_BT-474_Trastuzumab_2h_R1 2 STPDGTEHGEFLALDLGGTNFR 22 0 E9PB90;P52789 E9PB90 HK2 Hexokinase;Hexokinase-2 0 ; 117.01 0.00014479 553510000.0 223678.0 260210.0 213728.0 190730.0 205701.0 307350.0 282850.0 230670.0 272230.0 307800.0 False True 222473.74250096208 268870.9325497336 243819.0446429212 214876.3984440127 231895.80306465176 286103.6179240781 269167.46490807045 247883.76671852652 205142.56419510968 288155.94047916244 0.772060232841356 0.9330744044444803 0.8461357563459726 0.745694841781515 0.8047580163679497 0.9928777364378758 0.9341034734889836 0.8602417368398895 0.7119150965757871 1.0 18.13649023634946 STPENHPET(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 STPENHPETPK 11 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 STPENHPET(1)PK 90.367 0.042461 551750000.0 1297000.0 931000.0 801810.0 710740.0 730680.0 1224900.0 1126000.0 1021000.0 1682800.0 1134900.0 True False 1290017.0961102482 961987.772198616 914697.8785425428 800719.6111261854 823727.7669203347 1140225.5461044516 1071531.0782622844 1097192.204532949 1268096.4883647307 1062469.7103632262 1.2141683508974863 0.905426067976791 0.8609166639017269 0.7536399422176878 0.7752952944312427 1.0731840493736458 1.0085285893900546 1.032680926177041 1.1935366024987262 1.0 20.01899028179178 2.713487369063798 24.23106811573978 1.0565714541800562 0.8915734165239046 0.2792522370846797 0.12761665940030328 712.2097481398517 688286.3027101543 0.042820950205565936 0.040389177009467564 516.9962215324932 -2.713487369063798 -0.1649980376561515 STPFIVPS(ph)SPTEQEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 STPFIVPS(0.562)S(0.438)PTEQEGR;STPFIVPS(0.61)S(0.389)PT(0.002)EQEGR 278.08 2.4543e-35 8066300000.0 2202740.0 2414080.0 2277080.0 2471330.0 2283190.0 2311270.0 2337430.0 2286150.0 2615970.0 2452110.0 True False 2190880.6925874227 2494431.193457824 2597673.071265831 2784200.1246088264 2573940.712972626 2151497.3450443572 2224359.5810502777 2456754.121834474 1971299.2457020963 2295614.2404430103 0.9543766779233013 1.0866073007878039 1.1315808316141693 1.2128344891568228 1.1212427016814044 0.937220769561509 0.9689605256242957 1.0701946688396422 0.8587240882952846 1.0 21.1304487983771 2.74680174818976 24.678800451798136 0.9796793119125988 1.1083860408762374 0.4194657082390386 0.07807670497374805 561.2725911866648 1680781.6694288328 0.025001608295843476 0.026098027977277293 558.215315928397 -2.74680174818976 0.12870672896363855 STPFIVPSS(ph)PTEQEGR ddPTM_BT-474_Trastuzumab_2h_R1 3 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 STPFIVPS(0.347)S(0.65)PT(0.003)EQEGR;STPFIVPS(0.084)S(0.915)PT(0.001)EQEGR;STPFIVPSS(1)PTEQEGR 352.27 3.0391999999999998e-87 12305300000.0 2976800.0 3296690.0 3104690.0 3184700.0 3164470.0 3288760.0 3308100.0 3009080.0 3521160.0 3301110.0 True False 2960773.2395535707 3406418.3337588147 3541803.365550756 3587882.693465349 3567446.4972168244 3061415.762108311 3148074.5648307838 3233632.829398636 2653417.299126666 3090430.333577543 0.9580456182379369 1.1022472491122224 1.146055074294684 1.1609654016409894 1.154352666829761 0.9906114785523593 1.0186524933524421 1.046337396531867 0.8585915269783861 1.0 21.559376312596587 2.72501706525326 24.06504388387293 0.9936889264115445 1.1096814291643393 0.41640771986502334 0.07119897862913166 515.2997890559385 915615.6590790187 0.023541535612172693 0.02232337532395484 530.9053053191873 -2.72501706525326 0.11599250275279482 STPLASPSPS(ph)PGRSPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 STPLAS(0.034)PS(0.067)PS(0.525)PGRS(0.374)PQR 161.91 7.649100000000002e-09 69727000.0 69498.0 93221.0 85674.0 90835.0 76044.0 92463.0 100130.0 78461.0 110700.0 90288.0 True False 69123.83048995365 96323.80463171561 97736.15450824251 102334.70168647762 85727.7526518994 86071.25044449 95286.32936625447 84316.15823688512 83419.46830400263 84525.74254055423 0.8177843626370869 1.1395795143177931 1.1562886236858567 1.2106927263889922 1.0142206394787772 1.0182844640873074 1.127305439766323 0.9975204677608298 0.9869119844049778 1.0 16.367103164490874 1.6253869993758414 7.36437357387376 0.9927349109397976 1.0764233188366932 0.09645871438588594 0.102582445078663 0.26762649118594406 31.402633050341457 0.05312393263632912 0.02642551556059091 42.2072444233841 -1.6253869993758414 0.08368840789689558 STPLASPSPSPGRS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 3 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 STPLASPSPSPGRS(1)PQR;STPLASPSPSPGRS(1)PQR;STPLASPSPSPGRS(1)PQR 252.55 3.3039e-27 2338530000.0 737570.0 950720.0 1042850.0 977480.0 856480.0 1102830.0 1105090.0 1009900.0 1340340.0 1150960.0 True False 733599.0050717304 982364.1404776248 1189674.2153853064 1101228.867776718 965547.6512453171 1026593.9578825792 1051632.574846242 1085263.8661682918 1010031.1666358369 1077504.7474135675 0.6808313437436398 0.9117028419927454 1.1041011357406911 1.0220176481079064 0.896095960192295 0.9527512155717234 0.9759888087459209 1.007201006560156 0.9373797833005436 1.0 20.03926279507003 4.684207037789199 3.5436676393612894 0.9855936782177821 0.6608900755348054 0.7472951385957542 0.053285413743865584 0.12112287040617618 2.6287798916995366 0.013362397335027849 0.09479245144327544 48328.91417590518 -4.684207037789199 -0.3247036026829767 STPS(ph)PTPVESSDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 1 STPS(0.999)PT(0.001)PVESSDPK 160.05 2.9923e-07 0.0 116630.0 90122.0 84303.0 78523.0 83031.0 119920.0 103320.0 102180.0 156540.0 110840.0 True False 116002.07703881127 93121.65629010067 96172.1296251881 88464.00374885552 93604.50568670582 111630.21266131586 98322.01687927099 109805.19045952662 117962.81452853275 103766.0963051018 1.1179188691625461 0.8974189027627728 0.9268164944975352 0.8525328300753092 0.9020721509218385 1.0757869538918696 0.9475350849681801 1.0581991071213488 1.1368146121801532 1.0 16.662975620615303 2.740564524127425 24.997880364215128 1.0401004271590715 0.9315025521572254 0.29486072374441485 0.080105042281212 227.73823962664957 2840948.586222787 0.025029474886326133 0.02534678627745117 550.2556671846503 -2.740564524127425 -0.10859787500184603 STPSHGSVSSLNSTGSLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 STPSHGSVSSLNSTGSLSPK 20 0 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 STPSHGSVSSLNSTGSLS(1)PK;STPSHGSVSSLNS(0.001)T(0.001)GS(0.025)LS(0.973)PK;STPSHGS(0.002)VS(0.033)S(0.033)LNS(0.033)T(0.033)GS(0.026)LS(0.84)PK;STPSHGSVSSLNSTGSLS(1)PK;STPSHGSVSSLNSTGSLS(1)PK;STPSHGSVSSLNST(0.001)GSLS(0.999)PK 359.08 1.6069999999999993e-95 2645661000.0 773818.0 1041938.0 1220385.0 1191049.0 1257601.0 1538769.0 1520790.0 1503516.0 1629090.0 1609127.0 True False 769651.849867262 1076618.2764651782 1392204.6002234218 1341835.6812789962 1417749.0329648803 1432397.5209026036 1447223.5777180293 1615715.9986195501 1227622.5981876033 1506431.1372170658 0.5109107418538181 0.7146813749841161 0.9241740732970626 0.8907381480164184 0.9411309936038537 0.9508549614480025 0.9606968031685705 1.0725455407170976 0.8149211522907547 1.0 20.522703294519324 4.986682074100801 0.9108615656063582 0.9687182880780436 0.049238652038447725 0.8250714124100659 0.06432880047998751 1.159483524523419 0.5586070663983512 0.020310045601019008 1.1737745705492466 96979.97640145123 -4.986682074100801 -0.9194796360395959 STPTAEAEEAGIGDTPS(ph)LEDEAAGHVTQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 STPTAEAEEAGIGDTPSLEDEAAGHVTQAR 30 0 P10636-7;P10636-4 P10636-7 MAPT Microtubule-associated protein tau 1 STPTAEAEEAGIGDT(0.022)PS(0.978)LEDEAAGHVTQAR 240.26 9.017100000000001e-46 329710000.0 57316.0 51433.0 67436.0 51884.0 66676.0 72745.0 87686.0 56106.0 59758.0 65119.0 True False 57007.41702440624 53144.916313094924 76930.4026357802 58452.509080213626 75166.79338038572 67716.30937331072 83444.29318695083 60292.91462049522 45031.44161617518 60963.04966881923 0.9351142591143012 0.8717561966109605 1.261918540061617 0.9588186515890516 1.2329893892895465 1.1107762774529566 1.3687683546059555 0.9890075209169406 0.7386677973101371 1.0 15.89564745482215 1.476653757821151 9.551843149657499 0.8671911920563388 1.1070367072442413 0.2664936038870863 0.1579284004230021 0.11744686010948967 41.7428589136044 0.08557570297026339 0.03932300179664026 29.967723833292904 -1.476653757821151 0.23984551518790254 STPTDLILCVPHLYSCLEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 STPTDLILCVPHLYSCLEDR 20 0 Q14008;Q14008-3;Q14008-2 Q14008 CKAP5 Cytoskeleton-associated protein 5 0 ; 103.9 0.00027852 346610000.0 339030.0 400300.0 442350.0 364980.0 422140.0 559830.0 484220.0 465830.0 523550.0 407690.0 False True 337204.70014977414 413623.74351353984 504629.03502487426 411186.43057775724 475897.02678019076 521130.26979806914 460796.42869996716 500592.6000368108 394528.11771057476 381670.8751590307 0.8834960226118148 1.0837183826017516 1.3221575652441664 1.0773324802591455 1.2468780243761037 1.3653917647788292 1.2073135748384447 1.3115818696625174 1.0336867269376706 1.0 18.541969574883986 4.584036246468262 3.1977569371098378 1.2158187449413143 0.8797036646148549 0.3751258623177648 0.12025793078041667 0.24902316087446602 4.241919345866806 0.027745874796385038 0.16562773792612956 38373.9271257002 -4.584036246468262 -0.3361150803264593 STQIENQHQGAQDTSDLMS(ph)PSKR ddPTM_BT-474_Trastuzumab_2h_R1 4 STQIENQHQGAQDTSDLMSPSKR 23 1 Q9NVR2;H0YBW3 Q9NVR2 INTS10 Integrator complex subunit 10 1 STQIENQHQGAQDT(0.022)S(0.043)DLMS(0.684)PS(0.251)KR;STQIENQHQGAQDTSDLMS(0.831)PS(0.169)KR;STQIENQHQGAQDTS(0.001)DLMS(0.768)PS(0.231)KR;STQIENQHQGAQDTSDLMS(0.785)PS(0.215)KR 204.25 8.2687000000000015e-25 3746500000.0 1134860.0 835094.0 847712.0 805467.0 780039.0 1077086.0 1016293.0 918488.0 1415082.0 1085725.0 True False 1128750.0398548003 862889.5989650174 967062.4811552068 907439.0396136086 879372.3429966199 1002629.5800077204 967131.0249737217 987030.2385475602 1066354.0022273245 1016433.1009640628 1.110501063753441 0.8489389003040012 0.951427575743028 0.8927680914296514 0.8651551608881646 0.9864196463660518 0.9514950113848326 0.9710725060128259 1.0491138090799217 1.0 19.955083833121183 1.5819891420980827 1.6254107008621441 1.02339249068026 0.9339402285831035 0.1571959489918653 0.07047812089151564 0.5774625045190029 3.0251039759354157 0.05571103464024921 0.01945217292131222 38.19347218778507 -1.5819891420980827 -0.08945226209715651 STQKPLHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 STQKPLHYK 9 1 Q13427;E9PG73;C9JM79;Q13427-2;C9JN15 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G;Peptidyl-prolyl cis-trans isomerase 0 ; 76.22800000000002 0.021646 1075470000.0 1857260.0 1950730.0 2028070.0 1851360.0 1640230.0 2045880.0 2172900.0 1903340.0 3086000.0 2155800.0 False True 1847260.7185209824 2015658.868808815 2313604.627699549 2085741.9861757816 1849103.568095115 1904453.1310834931 2067788.525715913 2045376.8957646855 2325496.6502814144 2018214.9983267642 0.915294317033857 0.9987334701604792 1.1463618244922777 1.0334587682209289 0.9162074256846501 0.9436324339391059 1.0245630556854688 1.0134583765656484 1.1522541712401342 1.0 20.94464844074457 1.4145376150592137 10.844703417564318 1.0786296568227989 1.0013384735396427 0.15554154486742933 0.07224659235592563 0.9256724735232543 154.03857858719672 0.04847974343395289 0.01829410891399106 25.973926967105495 -1.4145376150592137 -0.0772911832831562 STS(ph)FRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_BT-474_Trastuzumab_2h_R1 2 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 1 S(0.057)T(0.057)S(0.881)FRGGMGS(0.005)GGLATGIAGGLAGMGGIQNEK;S(0.161)T(0.161)S(0.678)FRGGMGSGGLATGIAGGLAGMGGIQNEK 267.47 2.396e-59 2016300000.0 1401340.0 909970.0 702420.0 1657010.0 577960.0 760770.0 889490.0 907750.0 2338400.0 1437230.0 True False 1393795.3411435108 940257.8013615184 801314.6304559109 1866787.2961029375 651559.7801626931 708179.7605599499 846461.9705182231 975490.9144611013 1762132.652954651 1345504.7509254895 1.0358903156490566 0.6988141816034267 0.5955494619433608 1.3874252727973573 0.48424933447059587 0.5263301820917666 0.6291036653241056 0.7249999777333536 1.3096443187900964 1.0 20.35971605441216 1.2502236995883775 24.883820869157113 1.1548221470949547 0.7490815444728302 0.26204350367569873 0.26429334041733393 232.96859900462047 497058.2269684885 0.17751360386451978 0.06362593854431027 17.791956151881617 -1.2502236995883775 -0.4057406026221245 STS(ph)GPRPGCQPSSPCVPK ddPTM_BT-474_Trastuzumab_2h_R1 4 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 S(0.088)T(0.055)S(0.857)GPRPGCQPSSPCVPK;S(0.111)T(0.111)S(0.779)GPRPGCQPSSPCVPK;S(0.007)T(0.028)S(0.964)GPRPGCQPSSPCVPK;S(0.095)T(0.203)S(0.702)GPRPGCQPSSPCVPK 135.31 5.2540999999999985e-06 2305130000.0 823800.0 626700.0 594980.0 636380.0 616470.0 779100.0 571500.0 634400.0 990070.0 802480.0 True False 819364.7523327842 647559.33065185 678748.012341132 716945.6427504882 694973.8003960402 725242.6508041293 543854.3616579886 681742.1494179262 746080.5147583007 751265.0393623066 1.0906467217325626 0.8619585588616173 0.9034734438291859 0.9543178574621953 0.925071398219132 0.9653619066577812 0.7239181023512373 0.9074589042458395 0.993098940676906 1.0 19.518962441453635 STS(ph)GSPRPAGAKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 STSGSPRPAGAKPK 14 2 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 S(0.05)T(0.244)S(0.428)GS(0.279)PRPAGAKPK;S(0.032)T(0.136)S(0.493)GS(0.339)PRPAGAKPK 67.646 0.027134 1676950000.0 3528100.0 2938600.0 2586500.0 2534680.0 2626500.0 3744600.0 3552400.0 3545400.0 5400700.0 3849700.0 True False 3509105.1016087607 3036409.5245787883 2950656.7177389804 2855570.228113403 2960969.206514834 3485744.6158402497 3380556.840514157 3809975.75117641 4069769.850672336 3604008.8501060107 0.9736671710741058 0.8425088979705123 0.8187151698176846 0.7923316359307518 0.8215765636723501 0.967185365190687 0.9379990397123246 1.057149388260892 1.1292341445145522 1.0 21.7811711232027 2.1450988704910365 1.3818575763432621 1.0698573743367277 0.8474403272954484 0.6773863621035903 0.06083048204291787 0.24042550547147912 0.8762987750780823 0.03939281004055422 0.02105043465149922 139.66862912798786 -2.1450988704910365 -0.2224170470412793 STS(ph)LNERPK ddPTM_BT-474_Trastuzumab_2h_R1 4 STSLNERPK 9 1 P49815;P49815-4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y6C9;X5D2U8;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7 P49815 TSC2 Tuberin 1 S(0.001)T(0.024)S(0.975)LNERPK;S(0.01)T(0.03)S(0.96)LNERPK;S(0.001)T(0.03)S(0.969)LNERPK;S(0.001)T(0.025)S(0.973)LNERPK 122.34 0.00035636 4399910000.0 4639140.0 3438830.0 3220180.0 3265550.0 3127900.0 4142680.0 3784680.0 3826810.0 5830640.0 4050870.0 True False 4614163.385696904 3553289.3777333666 3673553.3536936752 3678968.2951756176 3526219.5244841934 3856306.2824197724 3601600.569518384 4112385.994347439 4393756.898573175 3792340.0084757055 1.216706143274195 0.9369648738752138 0.9686772139321507 0.9701050768004168 0.9298268395247407 1.0168672307338227 0.949704024815542 1.0843927456811482 1.158587280874956 1.0 21.854656886553894 1.6390637307477791 6.366523758929562 1.0930486009253901 0.9921375299402762 0.15601013993555435 0.0859088594297499 0.19608590681062463 16.499635746721406 0.04280940395674847 0.021092477118903687 43.55757877695132 -1.6390637307477791 -0.10091107098511398 STS(ph)LSALVR ddPTM_BT-474_Trastuzumab_2h_R1 3 STSLSALVR 9 0 Q5VZ89-7;Q5VZ89-3;Q5VZ89;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-7 DENND4C DENN domain-containing protein 4C 1 S(0.071)T(0.04)S(0.862)LS(0.027)ALVR;S(0.003)T(0.009)S(0.982)LS(0.006)ALVR;S(0.001)T(0.005)S(0.994)LSALVR 202.96 1.9917e-05 219277000.0 551236.0 370014.0 373926.0 390327.0 374193.0 458657.0 389252.0 357862.0 564724.0 523731.0 True False 548268.2066240768 382329.6923118136 426571.5305769436 439742.35817887145 421844.2605343247 426951.1211524446 370422.3936729578 384567.47962641506 425555.3371139081 490306.0391913326 1.1182163032875179 0.7797776526318019 0.8700107616061449 0.8968732241278194 0.8603692934928505 0.8707849527136562 0.75549221111757 0.7843417149433579 0.8679381918602949 1.0 18.903323006114924 4.746688403008772 24.80134322740535 0.8426145537544978 1.118216455535071 0.5774237173628594 0.06719325310513528 619.6283593600675 1890702.2819136407 0.015767514556688757 0.17582615693731443 55806.964803963805 -4.746688403008772 0.2756019017805733 STS(ph)MDSGSSESPASLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 STSMDSGSSESPASLKR 17 1 F8W7U0;Q15811-6;Q15811-12;Q15811-11;Q15811-3;Q15811-10;Q15811-7;Q15811-2;Q15811-4;Q15811-9;Q15811-8;Q15811;H0Y7J7 F8W7U0 ITSN1 Intersectin-1 1 STS(1)MDSGSSESPASLKR;S(0.001)T(0.028)S(0.971)MDSGSSESPASLKR 199.81 7.9381e-12 191360000.0 135008.0 132044.0 121100.0 139880.0 122869.0 157293.0 144828.0 118798.0 186527.0 162311.0 True False 134281.1319287991 136439.00471771637 138149.8273799306 157588.79365778057 138515.6388483801 146419.7051378946 137822.11634331287 127663.31000402075 140559.92018374644 151952.17301856165 0.8837065588551738 0.8979075587227682 0.9091665136177748 1.0370947024135706 0.9115739255104945 0.9635907287749599 0.9070098413563146 0.8401545530278537 0.9250273779669896 1.0 17.213257780956685 -0.447590224240233 8.614414676399448 0.9999999977400381 0.9168313848439094 0.19240921085133345 0.049228479334858515 0.0 0.0 0.05097371177643866 0.01201461908645612 0.35678761931576797 0.447590224240233 -0.08316861289612876 STS(ph)PAGQHHS(ph)PISSR ddPTM_BT-474_Trastuzumab_2h_R1 3 STSPAGQHHSPISSR 15 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(0.262)T(0.328)S(0.411)PAGQHHS(1)PISSR;S(0.262)T(0.327)S(0.411)PAGQHHS(0.999)PIS(0.001)SR;S(0.261)T(0.327)S(0.412)PAGQHHS(0.928)PIS(0.061)S(0.011)R 151.82 1.5523e-06 2382950000.0 1174008.0 1538610.0 1397160.0 1562290.0 1468700.0 1562739.0 1514365.0 1014872.0 1508220.0 1370115.0 True False 1167687.271372552 1589821.7037406133 1593867.9836675778 1760075.7538147967 1655730.2393330804 1454710.5312219155 1441109.3795139124 1090606.902055596 1136539.3901125845 1282673.0876855329 0.9103545420755165 1.2394597805192142 1.2426143488701147 1.372193562578516 1.2908435167379206 1.1341241546174547 1.1235203991956075 0.8502609998807235 0.8860709724278745 1.0 20.290722089812498 1.9465891522363301 2.583561030988379 0.8981973479704243 1.2149962808497294 0.5225631288651555 0.12084481887190258 0.21111114485742147 2.5820690957438144 0.06639778409359459 0.035431680075185934 88.4278675836284 -1.9465891522363301 0.31679893287930516 STS(ph)PIIGS(ph)PPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 STSPIIGSPPVR 12 0 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 2 STS(1)PIIGS(1)PPVR;ST(0.011)S(0.989)PIIGS(1)PPVR;ST(0.002)S(0.998)PIIGS(1)PPVR;STS(1)PIIGS(1)PPVR 193.51 3.9719e-06 2356670000.0 1722440.0 1710660.0 1512170.0 1540440.0 1623140.0 1882630.0 1780000.0 1656590.0 1939280.0 1786120.0 True False 1713166.5744210735 1767598.2839841936 1725070.3919827365 1735459.5460551274 1829837.2578954832 1752488.2193343323 1693894.599739668 1780213.1577935743 1461370.4290206525 1672128.2924257328 1.024542543883285 1.0570948963610705 1.0316615057569545 1.037874637918793 1.0943163070585715 1.048058469719463 1.0130171275807784 1.0646390984815193 0.8739583174570076 1.0 20.6732541103709 1.2537648321178307 24.999999999999794 0.9369791410478245 1.0468470090192405 0.6037343677650171 0.035458005952900065 121.41582397517092 199643.4511935163 0.021835559428563113 0.007908128179872695 17.93762052309269 -1.2537648321178307 0.10986786797141601 STS(ph)PIIGSPPVR ddPTM_BT-474_Trastuzumab_2h_R1 4 STSPIIGSPPVR 12 0 Q86TB9-4;Q86TB9;Q86TB9-2 Q86TB9-4 PATL1 Protein PAT1 homolog 1 1 ST(0.001)S(0.957)PIIGS(0.042)PPVR;ST(0.001)S(0.999)PIIGSPPVR;ST(0.001)S(0.999)PIIGSPPVR;S(0.024)T(0.024)S(0.951)PIIGSPPVR 232.78 2.7704e-13 5569200000.0 4602680.0 4727870.0 4210910.0 4173600.0 3847730.0 4325880.0 4255930.0 3919310.0 4249990.0 4244400.0 True False 4577899.682285824 4885234.294892232 4803769.526114151 4701977.332071146 4337715.608217513 4026842.0976261883 4050054.4066685685 4211788.814052919 3202636.9114483157 3973518.7581863357 1.152102194774928 1.2294479005107397 1.2089459792324657 1.1833283339569047 1.0916560037072558 1.0134196772898063 1.0192614287587172 1.059964497556654 0.8059951660855177 1.0 21.92198572444332 2.8095236341357803 0.8669710410387509 0.9619979150366021 1.21212921131794 0.7165369200041762 0.06407701859830299 0.3327632392183723 0.5424581751069979 0.03860785227810677 0.039203915498230775 644.9464166447685 -2.8095236341357803 0.2501312962813379 STS(ph)PTFNK ddPTM_BT-474_Trastuzumab_2h_R1 3 STSPTFNK 8 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 S(0.007)T(0.046)S(0.946)PT(0.001)FNK;S(0.077)T(0.038)S(0.885)PT(0.001)FNK;ST(0.003)S(0.996)PT(0.001)FNK 128.91 0.001168 851690000.0 2363580.0 2046920.0 1913550.0 1796500.0 1713970.0 2693080.0 2669140.0 2068400.0 2977150.0 2588240.0 True False 2350854.7478984236 2115050.49481073 2182961.207125235 2023936.7158007033 1932233.9200038924 2506913.7184284218 2540023.501095022 2222754.51112238 2243471.274266139 2423056.3072962547 0.9702022775201635 0.8728854085816892 0.9009122902146143 0.8352825766806445 0.7974366564184214 1.0346081149165447 1.0482725859265252 0.9173350633368567 0.9258849113454966 1.0 21.208396500037164 2.7310298162664925 24.996764743217003 0.9802249191851883 0.8744021051100055 0.48256942664401226 0.0567660378572218 570.92804717229 1895060.9467074338 0.019434043246560645 0.01865809793237731 538.3067384226754 -2.7310298162664925 -0.10582281407518279 STS(ph)PVTDPSIPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 STSPVTDPSIPIR 13 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 S(0.112)T(0.112)S(0.775)PVT(0.001)DPSIPIR 84.18799999999997 0.0082694 0.0 132280.0 162690.0 142790.0 150770.0 144310.0 177070.0 177880.0 143950.0 169980.0 167820.0 True False 131567.81917768964 168105.03830181828 162893.590847071 169857.4665412038 162687.02310761684 164829.56767794528 169275.26483241128 154692.27996328907 128090.70661530596 157109.5839220696 0.8374270741048532 1.0699858920459155 1.0368151119785947 1.0811400698855995 1.0355003116061576 1.049137573680451 1.0774343652795628 0.9846138987932169 0.815295308011523 1.0 17.261411664331234 1.4538327958246886 6.552631648239272 0.9040208184623905 1.0315620794176052 0.2648016714646756 0.07824527920741461 0.1819245634893121 18.675131528246563 0.0446464160970485 0.01854728561509738 28.43366195468396 -1.4538327958246886 0.12754126095521479 STS(ph)QSIVSLLTGTAGEDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 STSQSIVSLLTGTAGEDEK 19 0 V9GZ20;V9GXZ5;Q70EL4-2;Q70EL4-3;Q70EL4-4;Q70EL4 V9GZ20 USP43 Ubiquitin carboxyl-terminal hydrolase 43 1 S(0.155)T(0.155)S(0.69)QS(0.001)IVSLLTGTAGEDEK 154.55 3.635e-08 28441000.0 116430.0 77579.0 78070.0 79865.0 75218.0 94406.0 95525.0 98575.0 143030.0 93341.0 True False 115803.15381658894 80161.1701175042 89061.57740339528 89975.900811257 84796.56644798505 87879.93542782005 90904.0908090629 105931.16705370747 107782.17300380762 87383.89746674935 1.325223035063794 0.9173448706382834 1.0191989598230533 1.0296622537978917 0.9703912151578178 1.0056765373879033 1.040284233644454 1.212250427420173 1.2334328878477876 1.0 16.415079833358075 1.7526604898152325 24.999583525854774 1.1675628484333578 1.0332929454511033 0.13252760547814768 0.11749905434083623 6.642945380059979 11794.534200937216 0.05107350115553843 0.028323187862835518 56.57968038358195 -1.7526604898152325 -0.1342699029822545 STS(ph)TPNVHMVSTTLPVDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 S(0.161)T(0.161)S(0.668)T(0.01)PNVHMVSTTLPVDSR;S(0.119)T(0.119)S(0.736)T(0.026)PNVHMVSTTLPVDSR;S(0.03)T(0.132)S(0.798)T(0.04)PNVHMVSTTLPVDSR 232.44 6.6411e-21 5534090000.0 1910970.0 1650800.0 1652450.0 1800440.0 1695600.0 1884740.0 1731700.0 1622350.0 2012300.0 1912440.0 True False 1900681.5498487274 1705745.8800703255 1885100.5966471182 2028375.5193967284 1911524.609391415 1754452.3600007368 1647931.0552635845 1743417.995126374 1516395.6284385247 1790386.4418777411 1.0616040790921706 0.9527249761126176 1.0529015147534528 1.1329260945862538 1.0676603467721892 0.9799294269457732 0.9204331627619171 0.9737663078468651 0.8469655449625404 1.0 20.771839585645104 2.54994454204 3.6931749697379668 0.9376083669986063 1.0518675041500325 0.5058888648037139 0.05530637142384007 0.21229362749037653 5.586298178751002 0.019598731484900333 0.017842202005313577 354.7680836373435 -2.54994454204 0.11425913715142622 STS(ph)TPT(ph)SPGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 STSTPTSPGPR 11 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;H3BRB0;A0A0C4DGL7 Q8WWM7 ATXN2L Ataxin-2-like protein 2 S(0.007)T(0.044)S(0.948)T(0.036)PT(0.561)S(0.404)PGPR 93.623 0.0083037 0.0 138040.0 141270.0 108890.0 131110.0 98764.0 126620.0 117220.0 115810.0 156910.0 126680.0 True False 137296.8079776859 145972.08655048176 124220.7655111529 147708.51255698883 111341.0099799089 117867.0574314194 111549.62077611467 124452.33027126415 118241.63298627888 118595.1739437956 1.157693044429897 1.230843395192966 1.0474352486722889 1.2454850197107563 0.9388325534450113 0.9938604878414254 0.9405915693414308 1.0493878134555825 0.9970189262702691 1.0 16.855685777162076 3.232955303887091 24.999998853571228 0.9903314195580956 1.165903488225236 0.7076047630853441 0.057807523767402995 73.3405968183733 327103.0056128678 0.015877502360774683 0.019487995748012264 1709.8393351782522 -3.232955303887091 0.17557206866714037 STS(ph)TPTS(ph)PGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 STSTPTSPGPR 11 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;H3BRB0;A0A0C4DGL7 Q8WWM7 ATXN2L Ataxin-2-like protein 2 S(0.002)T(0.002)S(0.995)T(0.009)PT(0.341)S(0.652)PGPR 109.96 0.0015747 0.0 284190.0 288380.0 225560.0 257470.0 233200.0 261900.0 232640.0 237900.0 313650.0 263560.0 True False 282659.95261647715 297978.5539706084 257316.88739733372 290065.6756010059 262896.6377153087 243795.46944628577 221386.31442889696 255653.3060317226 236355.1601946744 246739.3751549314 1.1455810506085244 1.207665188353108 1.0428691700939932 1.1755954047418222 1.06548311371151 0.9880687640276421 0.8972476091012436 1.0361269086913834 0.9579142366161194 1.0 17.912628436559967 2.9280303956378444 2.8481686742521233 0.9760195650794011 1.1403142739953505 0.6997385243931453 0.05151198317546938 0.15051534936803831 2.398626897692714 0.016231844613820393 0.018031028567198987 847.2867124276328 -2.9280303956378444 0.16429470891594933 STSAPQMS(ph)PGSSDNQSSSPQPAQQK ddPTM_BT-474_Trastuzumab_2h_R1 6 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 STS(0.001)APQMS(0.981)PGS(0.016)S(0.002)DNQSSSPQPAQQK;STSAPQMS(0.755)PGS(0.243)S(0.002)DNQSSSPQPAQQK;STSAPQMS(0.979)PGS(0.021)SDNQSSSPQPAQQK;STSAPQMS(0.99)PGS(0.007)S(0.002)DNQSSSPQPAQQK;STSAPQMS(0.975)PGS(0.021)S(0.004)DNQSSSPQPAQQK;STSAPQMS(0.994)PGS(0.003)S(0.003)DNQSSSPQPAQQK 264.19 1.9252e-45 7801820000.0 4182310.0 3590800.0 3607160.0 3550870.0 3755430.0 4365630.0 4216820.0 4051960.0 4755540.0 4459320.0 True False 4159792.907658321 3710317.6073155664 4115016.7740032207 4000409.7779210918 4233661.75032248 4063844.273687623 4012836.306783272 4354337.830635968 3583600.8879712475 4174722.379784067 0.9964238407329691 0.8887579268223049 0.9856983050968925 0.9582457021077432 1.0141181532989654 0.9734406037073585 0.9612223141388462 1.0430245258275572 0.858404598429035 1.0 21.99324883047353 STSESFIQHIVSLVHHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 STSESFIQHIVSLVHHVK 18 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ; 248.54 5.655399999999999e-25 1121770000.0 340720.0 465100.0 498510.0 502860.0 509920.0 569680.0 554130.0 326170.0 605370.0 481400.0 False True 338885.60137755045 480580.5723411127 568695.8748734037 566522.024440603 574855.2894673686 530299.362482475 527324.614917833 350510.4616577001 456184.67504240404 450676.63985272404 0.7519484513071154 1.0663534113908388 1.261871205614844 1.2570476797415902 1.2755382432407074 1.1766737292080875 1.1700731040556187 0.7777426887984319 1.0122217011103125 1.0 18.781733146495743 1.7568372834645276 24.999999999993083 0.9121520549414106 1.1506156482545253 0.2660986932157079 0.15562827289861614 9.01049961611866 12337.635728334102 0.0746016380934732 0.04137100676338357 57.1264561637833 -1.7568372834645276 0.23846359331311473 STSFMSVS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 10 STSFMSVSPSK 11 0 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 1 STSFMSVS(0.999)PSK;STSFMSVS(0.843)PS(0.157)K;STSFMS(0.001)VS(0.999)PSK;STSFMSVS(1)PSK;STSFMSVS(1)PSK;STSFMSVS(1)PSK;STSFMS(0.003)VS(0.996)PS(0.001)K;STSFMSVS(0.992)PS(0.007)K;STSFMSVS(1)PSK;STSFMS(0.058)VS(0.942)PSK 311.54 1.3112999999999999e-45 6907230000.0 12344730.0 10252300.0 9438290.0 8915670.0 9275500.0 13129100.0 12857590.0 11835300.0 17550340.0 12628450.0 True False 12278267.345308444 10593541.607853776 10767119.192912666 10044392.907855755 10456679.94480423 12221516.219577072 12235619.250936378 12718510.184435677 13225293.86950743 11822491.509240001 1.0385515892070825 0.8960498385280525 0.9107318186270215 0.8496003486240989 0.8844734577844015 1.0337513213712362 1.0349442197842553 1.075789327020906 1.118655391646596 1.0 23.495030769882767 2.634777794397034 4.214459214645923 1.0608419171602663 0.910988201505883 0.616292719388525 0.05397722680517317 0.15007793970010969 4.595309429514992 0.018199207394423003 0.017108133174553213 431.2983477258782 -2.634777794397034 -0.14985371565438332 STSFMSVS(ph)PSKEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 STSFMSVSPSKEIK 14 1 Q8TB45;Q8TB45-2 Q8TB45 DEPTOR DEP domain-containing mTOR-interacting protein 1 STSFMSVS(0.5)PS(0.5)KEIK 158.45 3.0694e-06 434180000.0 303680.0 294920.0 289480.0 346910.0 265170.0 424300.0 399300.0 374780.0 896530.0 480550.0 True False 302045.0206220199 304736.233917095 330236.26779473433 390828.770430516 298937.8277142732 394969.13969476597 379984.3335258708 402747.9866942787 675592.1943865186 449880.8875804461 0.6713888697216756 0.6773709271270235 0.734052672410278 0.8687383287884827 0.6644821684291227 0.877941585424962 0.8446331996220297 0.8952324888935425 1.5017134824730949 1.0 18.779183552225952 1.4273206463575265 4.492546280887393 1.250368284507195 0.7698479939628805 0.6587490908272343 0.1375526168373253 0.11221668805777123 4.004516858330494 0.09064066944248232 0.03315533605703656 26.749806595081488 -1.4273206463575265 -0.48052029054431455 STSGPRPGCQPSS(ph)PCVPK ddPTM_BT-474_Trastuzumab_2h_R1 3 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 STSGPRPGCQPS(0.029)S(0.971)PCVPK;STSGPRPGCQPS(0.061)S(0.939)PCVPK;STSGPRPGCQPS(0.021)S(0.979)PCVPK 169.85 1.0431e-11 1378340000.0 1201900.0 1028210.0 990430.0 990900.0 846040.0 1272930.0 1165120.0 1064590.0 1603300.0 1232310.0 True False 1195429.103943644 1062433.3482839284 1129873.9350281148 1116347.8384007346 953778.179128045 1184935.34525491 1108758.6944093704 1144035.111678485 1208188.1981193097 1153662.92076633 1.0362031078797007 0.9209218127407599 0.9793796044667767 0.9676551255189786 0.8267390430599 1.0271070725475053 0.961076822745476 0.9916545735200974 1.0472627457912582 1.0 20.137790325737168 1.7251627283563895 1.4609817357420338 1.0218471319490319 0.952983891383206 0.1668598710033058 0.05608240881705217 0.6619374063719277 2.7256678717570293 0.04332128061547054 0.0167137910243993 53.10834017209973 -1.7251627283563895 -0.06886324056582582 STSGS(ph)PRPAGAKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 STSGSPRPAGAKPK 14 2 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 S(0.028)T(0.106)S(0.411)GS(0.455)PRPAGAKPK;S(0.001)T(0.004)S(0.154)GS(0.841)PRPAGAKPK 97.235 0.001594 1356850000.0 2157900.0 1833810.0 1673680.0 1560850.0 1583950.0 2380750.0 2268200.0 2105430.0 3255900.0 2340290.0 True False 2146282.1061652293 1894847.2572884453 1909319.5961126536 1758453.4499624455 1785656.6436928117 2216174.356182685 2158478.50063456 2262547.877756911 2453527.071824771 2190930.688576927 0.979621179873701 0.8648595170845882 0.871465083796335 0.8026056958947487 0.8150219689754985 1.0115218923799705 0.9851879440497291 1.0326880213752911 1.1198560888379394 1.0 21.063112413840337 2.6618516967616457 5.758047792243666 1.0298771248165406 0.863557261705115 0.6837621809598607 0.05550492345370287 0.13726304404063433 7.926018642212276 0.018828758665825476 0.01776537353348759 459.04123229050253 -2.6618516967616457 -0.16631986311142555 STSHTSDFNPNSGSDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 STSHTSDFNPNSGSDQR 17 0 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5;F8WB06;F8VRK6 Q99700;F8WB06 ATXN2 Ataxin-2 0 ; 238.83 2.9098e-20 286500000.0 74275.0 142815.0 166740.0 203882.0 196799.0 160726.0 184274.0 154571.0 109564.0 170151.0 False True 73875.11165272833 147568.51094150933 190215.54266993876 229693.4402955074 221860.18613093937 149615.3899283075 175359.96262495933 166105.87291563395 82563.42028238258 159291.81750639985 0.4637721686473962 0.9264035858940494 1.1941325401871097 1.4419663476203293 1.3927908514323137 0.9392534548882049 1.1008723823363615 1.0427771841385407 0.5183155140976744 1.0 17.28131263492132 1.3829739049961902 8.448640284800438 0.7601108364630831 1.0848152793556713 0.15651410825763812 0.2797680971959466 0.4558512087902182 35.81593202422291 0.19392174521207123 0.07110236583126911 24.15315703505708 -1.3829739049961902 0.32470444289258826 STSTLEIQPSRAS(ph)PTSDIESVER ddPTM_BT-474_Trastuzumab_2h_R1 3 STSTLEIQPSRASPTSDIESVER 23 1 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 STSTLEIQPS(0.003)RAS(0.868)PT(0.065)S(0.065)DIESVER;STSTLEIQPSRAS(0.908)PT(0.09)S(0.002)DIESVER;STSTLEIQPSRAS(0.898)PT(0.051)S(0.051)DIESVER 284.06 2.2058999999999998e-52 3122710000.0 1391530.0 1732690.0 1631070.0 1898020.0 1961450.0 1853170.0 1997690.0 1698330.0 1980110.0 1904530.0 True False 1384038.1570935156 1790361.5392167764 1860710.478485412 2138309.137391624 2211229.0310750096 1725064.7197929516 1901054.1027831095 1825068.0085449978 1492138.422614624 1782981.2648498318 0.7762494112410562 1.004139288792564 1.043595081545698 1.1992886181962876 1.240186352300929 0.9675170198371332 1.0662221416797792 1.0236047032713553 0.8368783520225584 1.0 20.765860112864623 1.398833593320843 6.753629404226878 0.9190323009781248 1.0507061524029928 0.13070897449988672 0.12491766570821304 0.42354272403223514 27.79961797825102 0.08688076600757376 0.03204893007904393 25.051491822746403 -1.398833593320843 0.13167385142486798 STSTPTS(ph)PGPR ddPTM_BT-474_Trastuzumab_2h_R1 5 STSTPTSPGPR 11 0 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;H3BUF6;H3BRB0;A0A0C4DGL7 Q8WWM7 ATXN2L Ataxin-2-like protein 1 ST(0.001)S(0.002)T(0.035)PT(0.254)S(0.709)PGPR;STSTPT(0.004)S(0.996)PGPR;STST(0.032)PT(0.007)S(0.961)PGPR;STST(0.002)PT(0.007)S(0.992)PGPR;STS(0.006)T(0.051)PT(0.211)S(0.732)PGPR 149.93 3.5796e-05 5851730000.0 8447740.0 9291880.0 7750850.0 8788820.0 7524960.0 9791870.0 7505540.0 8714100.0 12073410.0 8168340.0 True False 8402258.306472156 9601154.60873992 8842102.308404084 9901483.710861994 8483219.052067714 9114981.074482638 7142468.356252849 9364390.391303202 9098079.880905421 7647029.547932296 1.0987610619007049 1.2555404093261293 1.1562793438917636 1.2948143653425908 1.1093482768562752 1.1919636268369418 0.934018668488619 1.2245788162065188 1.1897534622924897 1.0 22.86646801795403 3.1455445334301464 24.998529369045713 1.1183362189824466 1.2020592230536609 0.17659009504717937 0.09700335978673032 31.70563175677049 8505.206132257128 0.027072134973579447 0.03235739383862215 1398.1202740389788 -3.1455445334301464 0.08372300407121425 STSTS(ph)SPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 STSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 41 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 S(0.163)T(0.163)S(0.163)T(0.163)S(0.186)S(0.163)PVRPAAT(0.001)FPPATHCPLGGTLDGVYPTLMEPVLLPK 198.92 2.0105e-35 200460000.0 135660.0 118020.0 105940.0 98401.0 102540.0 129830.0 142830.0 128060.0 152080.0 133980.0 True False 134929.6216332428 121948.22435540354 120855.43115301282 110858.55651071804 115597.86119780333 120855.15768694655 135920.76723641387 137616.48747550396 114601.9217675948 125429.28169395095 1.0757426002205195 0.972246852636522 0.9635344276936992 0.8838331449686074 0.9216178203098029 0.9635322474526696 1.0836446274807048 1.0971639605757286 0.9136775736882952 1.0 16.936514661677514 2.3096444423837412 8.790026636964457 1.0404828601249925 0.9580417264613734 0.14466470762182393 0.06613210295443259 0.4148737848492949 46.75916840096506 0.02382411331351797 0.019889544824521026 204.00670544844786 -2.3096444423837412 -0.08244113366361905 STSYGYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 9 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R 139.39 0.00069893 21443929000.0 11302380.0 13530080.0 11967420.0 13157710.0 11495949.0 13956968.0 12887487.0 11140055.0 13587120.0 11422647.0 True False 11241529.24189248 13980420.53369394 13652328.71332064 14823474.736909613 12959889.963321883 12992155.653328711 12264070.018828752 11971382.47215308 10238756.334080234 10693643.8890399 1.0512346734693603 1.307357966915535 1.2766769545517733 1.3861949108014011 1.2119245878951233 1.2149418652929518 1.1468560339285665 1.1194857988886984 0.9574618755141184 1.0 23.350250203413385 1.6880651132273168 1.1349548751841594 0.9765512866939379 1.2562549267207324 0.5915653057074013 0.08380408418359343 0.31282997789046035 0.7582250467499456 0.07124518172373207 0.027322491920545505 48.76015901185877 -1.6880651132273168 0.2797036400267945 STT(ph)PMAPGVFLTQR ddPTM_BT-474_Trastuzumab_2h_R1 2 STTPMAPGVFLTQR 14 0 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y3N9 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 ST(0.025)T(0.974)PMAPGVFLTQR;S(0.006)T(0.03)T(0.964)PMAPGVFLTQR 144.8 1.7317e-05 0.0 199862.0 230090.0 216050.0 201052.0 177671.0 193511.0 192951.0 191766.0 259620.0 216030.0 True False 198785.9651987558 237748.40655765805 246467.9620597356 226505.1625856742 200296.3487114779 180134.04004589602 183617.22298560035 206076.55268801693 195640.1297297667 202242.7804474121 0.9829075963007976 1.1755594243299985 1.2186737223177324 1.1199666167790394 0.9903757665335287 0.8906821773681811 0.9079049574941201 1.0189562872510136 0.9673528483783763 1.0 17.62572867746972 3.210608488818363 4.083952560412506 0.9578459744951007 1.136638090923917 0.5859721243612024 0.06682409429583974 0.14531287255554579 5.317498768199009 0.020098214843139395 0.02549715392260642 1624.0840036889367 -3.210608488818363 0.17879211642881643 STT(ph)PPPAEPVSLPQEPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 S(0.069)T(0.069)T(0.862)PPPAEPVSLPQEPPK;S(0.007)T(0.007)T(0.985)PPPAEPVSLPQEPPK;S(0.069)T(0.069)T(0.862)PPPAEPVSLPQEPPK;S(0.086)T(0.086)T(0.827)PPPAEPVSLPQEPPK;S(0.068)T(0.068)T(0.865)PPPAEPVSLPQEPPK 274.02 5.6157e-38 6425990000.0 1650620.0 1390550.0 1355050.0 1226310.0 1304900.0 1580680.0 1563530.0 1561960.0 2201960.0 1644710.0 True False 1641733.245321124 1436833.6161447738 1545829.261694261 1381560.720263604 1471071.2802517447 1471411.3121204856 1487896.0806353735 1678521.3866721713 1659316.462752321 1539743.1996929268 1.06623834782874 0.9331644500403207 1.003952647430135 0.8972669731804178 0.9554004073829471 0.9556212441230013 0.9663274245550211 1.0901307354414171 1.0776579257393317 1.0 20.554258325814004 1.762403521655114 11.226347776714071 1.0625462816838667 0.9645728056469495 0.4143706204170281 0.04740733580169753 0.19364937658499515 86.30508934893008 0.02102167724352448 0.011569642159453799 57.863343088567106 -1.762403521655114 -0.0979734760369172 STT(ph)PPPAEPVSLPQEPPKPR ddPTM_BT-474_Trastuzumab_2h_R1 7 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 S(0.028)T(0.175)T(0.797)PPPAEPVSLPQEPPKPR;S(0.003)T(0.003)T(0.994)PPPAEPVSLPQEPPKPR;S(0.099)T(0.099)T(0.803)PPPAEPVSLPQEPPKPR;ST(0.002)T(0.998)PPPAEPVSLPQEPPKPR;ST(0.018)T(0.981)PPPAEPVSLPQEPPKPR;S(0.316)T(0.316)T(0.368)PPPAEPVSLPQEPPKPR;S(0.116)T(0.138)T(0.746)PPPAEPVSLPQEPPKPR 246.39 7.976e-30 185525307000.0 22551483.0 20727538.0 18207593.0 17995223.0 18931859.0 24390647.0 23340493.0 22828584.0 31501823.0 23572294.0 True False 22430068.321233332 21417441.572268695 20771063.83116456 20273416.38670822 21342719.025730297 22704578.98229725 22211424.184248026 24532168.85928074 23738620.824451696 22067890.015663758 1.016412004288244 0.9705251184896528 0.9412346996664062 0.9186839508588349 0.9671390880859595 1.0288513748338228 1.0065042089879181 1.1116680770960812 1.0757086793346375 1.0 24.39544535955357 2.3925670893637925 1.6462249341916981 1.06848467716108 0.9597269601831907 0.5281641127949952 0.03838369097797258 0.25771894091968983 1.4173164550446493 0.01882647363431721 0.013491442731872808 246.92615244192058 -2.3925670893637925 -0.10875771697788938 STT(ph)PTSSPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 STTPTSSPFR 10 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.008)T(0.087)T(0.887)PT(0.018)SSPFR;S(0.011)T(0.034)T(0.952)PT(0.003)S(0.001)SPFR;S(0.01)T(0.025)T(0.963)PT(0.002)SSPFR;ST(0.002)T(0.996)PT(0.001)S(0.001)SPFR 206.85 1.5967e-06 3222230000.0 3414000.0 3712150.0 3678160.0 3451350.0 2837560.0 3222690.0 3732510.0 3166750.0 4658550.0 3521650.0 True False 3395619.403331057 3835706.6687079356 4196012.9568601595 3888290.556125109 3198906.4464641977 2999913.02569626 3551954.2317271433 3403068.965430669 3510512.7738718367 3296895.2819637456 1.0299445729767032 1.1634299365502612 1.2727164795967885 1.179379453571576 0.970278450748614 0.9099206280854051 1.0773633761310961 1.032204141893061 1.064793532593141 1.0 21.65267663328399 3.245756184053382 24.994736301823966 1.0122798352931193 1.1694684438511838 0.5250629576003286 0.07074222600562556 136.99730273715892 475875.2637142609 0.020851467456110443 0.02766151725660498 1760.987138404461 -3.245756184053382 0.1571886085580645 STTAHS(ph)WQR ddPTM_BT-474_Trastuzumab_2h_R1 2 STTAHSWQR 9 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 STTAHS(1)WQR;STTAHS(1)WQR 124.12 0.00034684 331790000.0 165939.0 260930.0 236160.0 216700.0 250820.0 262530.0 266490.0 197727.0 258100.0 257580.0 True False 165045.60286155625 269614.8973144844 269409.27526048233 244134.19778124825 282760.4402733863 244381.9190291464 253598.86060933917 212482.39277736156 194494.7133628101 241141.02387466695 0.684436020920848 1.1180797567427463 1.117227052168891 1.0124125453997284 1.1725936787112219 1.0134398332660473 1.0516620379829986 0.8811540623125134 0.8065600379299157 1.0 17.879517583302864 1.7118204339578027 5.817557368185914 0.8828223722330099 1.0363278799834332 0.15697631941239132 0.13291898531643648 0.22013289416224588 18.05657252715947 0.06554821188773827 0.033270546571741555 51.501565904179316 -1.7118204339578027 0.15350550775042338 STTISMYLASK ddPTM_BT-474_Trastuzumab_2h_R1 1 STTISMYLASK 11 0 E9PQL0;Q86UB9-2;Q86UB9 E9PQL0 TMEM135 Transmembrane protein 135 0 58.37 0.080975 68721000.0 64883.0 271650.0 221060.0 295880.0 247080.0 128320.0 135310.0 94270.0 28814.0 118680.0 False True 64533.677137179024 280691.7060341071 252183.3265120352 333338.3776627405 278544.17344210355 119449.54043278891 128764.53836560366 101304.90609336057 21713.17578781874 111105.74079293996 0.5808311674681684 2.5263474599139992 2.2697596425913913 3.0001904067581893 2.5070187323732167 1.0750978264516386 1.1589368600275405 0.9117882241760619 0.1954280276865628 1.0 16.76157383661415 2.651112702420281 4.653271972971418 0.8667786781540788 2.245535285946678 0.5132158816242245 0.6373601147033183 0.18537208618599485 7.01047462073568 0.2123747710516403 0.20035594772856427 447.82950395045634 -2.651112702420281 1.3787566077925995 STTSVS(ph)EEDVSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 STTSVSEEDVSSR 13 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 STTSVS(1)EEDVSSR;STTSVS(1)EEDVSSR 270.16 8.2893e-26 450740000.0 528700.0 527980.0 449730.0 521340.0 478950.0 538120.0 462680.0 473010.0 646550.0 583500.0 True False 525853.5379440924 545553.49512935 513048.0748767637 587341.5905458052 539941.44354094 500921.0309982255 440298.40079075826 508308.4080961114 487216.41582613316 546260.530440517 0.962642381502526 0.9987056811324134 0.9392003380933086 1.0752041522607527 0.9884321005318082 0.9170002280674961 0.8060227240574961 0.9305237698323177 0.8919121713465746 1.0 19.05922966061596 2.703019781932336 4.571180247876044 0.897235601035408 0.9951583208921422 0.35696287880810207 0.05547849363735558 0.19950744325738448 10.11411059736404 0.017453902384649934 0.016872071814377654 504.68428519847475 -2.703019781932336 0.09792271985673418 STTTGHLIYK ddPTM_BT-474_Trastuzumab_2h_R1 7 STTTGHLIYK 10 0 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5;P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;; 121.83 0.00050465 76584300000.0 79818480.0 97543380.0 93375280.0 94522280.0 92103860.0 107340100.0 109502190.0 105616270.0 127214590.0 111392570.0 False True 79388746.1723469 100790052.43708171 106521707.79151677 106488790.95641233 103832740.62865159 99919931.53841645 104205150.73071177 113497892.37595229 95864258.88267116 104283400.81462286 0.7612788377842663 0.9665013957134844 1.0214636937365782 1.0211480458496922 0.9956785050885291 0.9581575855589611 0.9992496400836582 1.0883600984370405 0.9192667110375715 1.0 26.63593429597635 4.734864057620817 3.070502248768158 1.0066260930385185 0.7238125135279615 0.7442518322549558 0.041666414830358836 0.17399596934999614 2.4874558641366735 0.010390405115115277 0.11914079509501249 54308.031048480225 -4.734864057620817 -0.28281357951055697 STVDGLQVTQLNVDHTTENEDELFR ddPTM_BT-474_Trastuzumab_2h_R1 1 STVDGLQVTQLNVDHTTENEDELFR 25 0 Q15750;Q15750-2 Q15750 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 0 241.84 1.2465e-38 154480000.0 37959.0 41230.0 40958.0 43282.0 42670.0 43400.0 44878.0 39948.0 50837.0 49384.0 False True 37754.632961641364 42602.31562593869 46724.53038668204 48761.496762196584 48103.77157509534 40399.86015261094 42707.07968939145 42929.12261183373 38308.90253089959 46232.2708402305 0.8166294295193468 0.9214843842121402 1.0106475312050471 1.0547069368646542 1.0404803982337874 0.8738454637503054 0.9237504217990632 0.9285531909126464 0.8286182321281061 1.0 15.496612606269514 -0.20511927630847582 7.938674680003641 1.0000000159542841 0.9390089247233218 0.05748153186057914 0.07802112290737952 0.0 0.0 0.07872371775011722 0.01855535822044123 0.6235635540676909 0.20511927630847582 -0.06099109123096236 STVLSLDWHPNNVLLAAGSCDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 STVLSLDWHPNNVLLAAGSCDFK 23 0 A0A1W2PNV4;E9PF58;Q92747;Q92747-2;C9JEY1;C9K057;O15143 A0A1W2PNV4;Q92747;C9JEY1 ARPC1A;ARPC1B Actin-related protein 2/3 complex subunit 1A;Actin-related protein 2/3 complex subunit 1B 0 ; 278.19 7.9467e-52 1111240000.0 1568530.0 1532180.0 1494530.0 1373970.0 1337610.0 1696860.0 1826050.0 1618330.0 2268080.0 1680660.0 False True 1560085.2087600664 1583177.685077631 1704946.8333123676 1547914.4611236814 1507946.704864385 1579560.0621787887 1737716.9853115834 1739098.0023132295 1709142.0747149275 1573398.839914581 0.9915382986075943 1.00621510891897 1.0836075317081892 0.9838029759877774 0.9584007987105486 1.0039158680608549 1.1044351509792159 1.1053128794779359 1.0862738876861737 1.0 20.585452994325237 2.246072546625243 24.975615331219856 1.0859689683313933 1.0052030855390417 0.3914300422086131 0.041341298018982786 149.34106616231352 496529.5821108031 0.014669643474362469 0.01205542869289937 176.22703998932687 -2.246072546625243 -0.08076588279235164 STVPGHAGR ddPTM_BT-474_Trastuzumab_2h_R1 4 STVPGHAGR 9 0 P00491;G3V5M2;G3V2H3 P00491 PNP Purine nucleoside phosphorylase 0 ;;; 110.87 0.0022166 560340000.0 1023000.0 1203560.0 1151000.0 1218260.0 1148000.0 1232720.0 1296910.0 1109710.0 1451880.0 1293600.0 False True 1017492.2816659852 1243619.7670326175 1313050.7953286537 1372491.5910889867 1294190.995270904 1147504.9679107498 1234173.5086226813 1192522.195193202 1094083.6281952623 1211041.3404933196 0.840179643455861 1.0269011679865752 1.084232842781222 1.1333152264892132 1.0686596336535574 0.9475357525312158 1.0191010557244387 0.9847080816476721 0.903423848230966 1.0 20.207816683494908 2.7375786465829157 24.991082352648505 0.9752626668840776 1.0391285988057763 0.12346427677285388 0.07749861173480957 194.94280349598804 4961204.044505065 0.025505038243600456 0.02537426299515976 546.4855042273115 -2.7375786465829157 0.06386593192169876 STVTGERQS(ph)GDGQESTEPVENK ddPTM_BT-474_Trastuzumab_2h_R1 3 STVTGERQSGDGQESTEPVENK 22 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 STVTGERQS(1)GDGQESTEPVENK;STVTGERQS(1)GDGQESTEPVENK;STVTGERQS(1)GDGQESTEPVENK 312.7 1.8328999999999997e-67 2475980000.0 1186500.0 1098360.0 1093520.0 1082590.0 1088530.0 1267660.0 1283610.0 1191450.0 1835990.0 1416870.0 True False 1180112.0158325438 1134918.2486273597 1247478.1109537699 1219645.7829995463 1227147.8432772097 1180029.6479506637 1221516.8804336155 1280362.0490605112 1383534.865505566 1326444.143556564 0.8896808972810093 0.855609528784476 0.9404678794909038 0.9194852183743962 0.9251409863267114 0.8896188005223329 0.9208958299279685 0.9652589257377291 1.043040426712523 1.0 20.33913249441162 1.5591887024144295 2.4539686651673644 1.0208051362973616 0.9050478857385906 0.7794787545482206 0.024758102792191546 0.11725033737373407 1.535055408775293 0.018933365292192826 0.00686974883538535 36.24004284184496 -1.5591887024144295 -0.11575725055877095 STYNHLSSWLTDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 STYNHLSSWLTDAR 14 0 P61106;X6RFL8 P61106 RAB14 Ras-related protein Rab-14 0 ; 132.44 5.0402e-05 2139600000.0 612400.0 1207390.0 1354580.0 1406010.0 1464920.0 1486600.0 1275570.0 1146910.0 944610.0 1257170.0 False True 609102.9064440368 1247577.246267331 1545293.089779573 1584010.7218385488 1651468.8787388955 1383834.8410799862 1213865.8059493985 1232498.248090973 711823.5226255101 1176936.3342826138 0.5175325875339786 1.0600210138195585 1.3129793386160402 1.3458763024799143 1.403193045055854 1.175794136667116 1.0313776290110839 1.0472089374674851 0.6048105593234088 1.0 20.16660485002424 1.480486949033489 3.288652798467172 0.8030141525332943 1.1458226668331648 0.18647677123017048 0.25221552713961537 0.3499002438170428 7.5205792613991616 0.18872536058614975 0.06814512803156458 30.233397148825215 -1.480486949033489 0.34280851429987047 SVAAEGALLPQT(ph)PPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVAAEGALLPQTPPSPR 17 0 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 2 SVAAEGALLPQT(1)PPS(1)PR;SVAAEGALLPQT(1)PPS(1)PR 118.42 0.00089856 576440000.0 488460.0 488720.0 491990.0 497910.0 482640.0 556460.0 527430.0 476050.0 557620.0 549370.0 True False 485830.18563300796 504986.74976252194 561257.9155462598 560945.3549481374 544101.3431685966 517993.22996594163 501916.19592173817 511575.26833291916 420202.0227251847 514308.73626067967 0.9446275191926018 0.9818747265194562 1.0912859844204237 1.0906782549068343 1.057927475866979 1.0071639726209014 0.9759044724205107 0.9946851613922906 0.8170229146413011 1.0 18.97227513454933 1.7201311179741696 1.6665465165400741 0.9175111224536439 1.0322783506544275 0.3147901411621271 0.06265758010941776 0.41001364942450447 2.2570223828628433 0.04847084916763487 0.018940270363870346 52.496592894419344 -1.7201311179741696 0.11476722820078367 SVAAEGALLPQTPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVAAEGALLPQTPPSPR 17 0 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 SVAAEGALLPQT(0.001)PPS(0.999)PR;SVAAEGALLPQTPPS(1)PR;SVAAEGALLPQT(0.002)PPS(0.998)PR;SVAAEGALLPQTPPS(1)PR 301.34 2.2071e-46 1084440000.0 1150990.0 1258590.0 1187050.0 1214900.0 1153720.0 1343490.0 1365910.0 1151190.0 1258810.0 1324580.0 True False 1144793.1977270122 1300481.4073162773 1354176.3219764384 1368706.2154334981 1300639.4033658055 1250617.6985352822 1299835.7150170843 1237097.643424374 948593.1426898076 1240044.1703700076 0.9231874356422528 1.048737971106494 1.0920387792092725 1.1037560178401549 1.0488653827369048 1.0085267351098628 1.0482172700584012 0.9976238532335874 0.764967220810178 1.0 20.24196007964505 1.427553675893873 6.377870996425861 0.8795644728767732 1.0409051414752932 0.43439904496397075 0.07031479679814522 0.16109089426370982 12.441560903444383 0.04354420488501048 0.016774646853295744 26.76416359923751 -1.427553675893873 0.16134066859852003 SVAHVTEADLFHTIETLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVAHVTEADLFHTIETLMR 19 0 A5YKK6-3;A5YKK6-2;A5YKK6;H3BMZ2 A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 0 ; 310.49 9.508799999999994e-62 479030000.0 159512.0 216999.0 216821.0 235383.0 238036.0 245595.0 249162.0 171104.0 218732.0 217641.0 False True 158653.20511544912 224221.68053633434 247347.51215808358 265182.46366563695 268348.47365009144 228617.59571844427 237109.08216872733 183872.649328507 164828.42945863717 203750.96504816544 0.7786623492946132 1.1004692934010387 1.2139697699081435 1.301502859645104 1.3170414853576549 1.1220442350513555 1.1637200447746407 0.9024381763543582 0.8089700552813224 1.0 17.636447366992332 1.7093170514406226 4.84191711513756 0.8885154741369552 1.1561848934451067 0.3521402129359914 0.14704623417716328 0.1743208745259138 9.704741003044214 0.08144101105516104 0.04030697981754444 51.20555190686594 -1.7093170514406226 0.26766941930815147 SVAPAS(ph)PPPPDGPLAHR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVAPASPPPPDGPLAHR 17 0 Q2M2I3 Q2M2I3 FAM83E Protein FAM83E 1 SVAPAS(1)PPPPDGPLAHR;SVAPAS(1)PPPPDGPLAHR;S(0.004)VAPAS(0.996)PPPPDGPLAHR;S(0.003)VAPAS(0.997)PPPPDGPLAHR 162.33 1.8391e-09 8053900000.0 2057720.0 2693130.0 2400170.0 2543970.0 2524240.0 2427220.0 2440690.0 2073130.0 2407790.0 2156770.0 True False 2046641.4641541853 2782769.2040185365 2738093.0733483713 2866036.341160877 2845687.001657337 2259431.994461297 2322624.500358768 2227837.487740836 1814422.417233013 2019123.092096303 1.0136288729328098 1.3782068140924473 1.3560803123229184 1.4194460716039299 1.409367766034945 1.1190164697267166 1.1503134749191355 1.1033688319753903 0.8986190214630428 1.0 20.945297433903292 2.00643896753023 1.1220502092618752 0.9735633075711955 1.3189647522401655 0.5394961997506084 0.12322426047662076 0.3833414344939295 0.8910991624440083 0.09527458520119099 0.044551831798892175 101.49367250003243 -2.00643896753023 0.34540144466897005 SVAS(ph)NQSEMEFSSLQDMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVASNQSEMEFSSLQDMPK 19 0 Q8N163-2;Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 S(0.029)VAS(0.782)NQS(0.189)EMEFSSLQDMPK;S(0.016)VAS(0.695)NQS(0.289)EMEFSSLQDMPK 202.2 3.6325e-16 387970000.0 540800.0 509700.0 493440.0 486710.0 459010.0 625730.0 633390.0 571860.0 696040.0 656710.0 True False 537888.3928885284 526665.0563798435 562912.0629426327 548327.4360964998 517462.20273457933 582474.7579099819 602750.5059152294 614535.0970462408 524510.268458158 614798.2055622827 0.8749023468547472 0.856647029244605 0.9156045965160293 0.8918819722237314 0.8416781279660995 0.9474242973387692 0.9804038145556481 0.9995720408523293 0.8531421590250917 1.0 19.229753428616156 2.6019607746187483 5.60934891893503 0.9634608979589976 0.8784113518508313 0.4617948046519931 0.043055671896668396 0.20172017729716477 8.41246908379024 0.013925700221517078 0.01306460256583023 399.90862847128994 -2.6019607746187483 -0.08504954610816629 SVASLFDAFHAGFHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVASLFDAFHAGFHK 15 0 Q5GLZ8-6;Q5GLZ8-3;Q5GLZ8-2;Q5GLZ8 Q5GLZ8-6 HERC4 Probable E3 ubiquitin-protein ligase HERC4 0 ; 163.99 8.7139e-07 216580000.0 287480.0 340850.0 307520.0 333780.0 303200.0 360520.0 361680.0 161611.0 413500.0 322600.0 False True 285932.2396220305 352194.98620182386 350816.14298824273 376036.51377676526 341810.7227928027 335598.1009727952 344184.1566482262 173671.23346402982 311598.46561612556 302011.39180824434 0.9467597825037576 1.1661645744324853 1.1615990406447514 1.24510705217213 1.1317808932512987 1.111210073777204 1.1396396493108398 0.5750486179484867 1.0317440800841324 1.0 18.20424344317689 1.7761389620461254 24.999999999994344 0.8252877129300781 1.1354864581661184 0.42264884057938956 0.13625197273205886 34.428669104653146 22914.05654935917 0.05952279643861331 0.03304423814438194 59.722635168639115 -1.7761389620461254 0.3101987452360403 SVASNQS(ph)EMEFSSLQDMPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVASNQSEMEFSSLQDMPK 19 0 Q8N163-2;Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 S(0.011)VAS(0.344)NQS(0.644)EMEFS(0.001)SLQDMPK 130.3 1.1478e-05 423050000.0 281560.0 277550.0 274620.0 255880.0 268580.0 346570.0 334350.0 320170.0 391510.0 333650.0 True False 280044.11224425683 286788.0839674822 313284.10896016966 288274.38176403247 302782.07100161945 322612.43163802725 318176.2131589654 344062.7111903177 295027.6064652223 312356.17134786374 0.8965537995802179 0.9181444462260777 1.0029707676602058 0.9229027892104237 0.9693487716124493 1.0328351453595626 1.0186327095315175 1.1015076465614093 0.9445230590198809 1.0 18.252832508534265 2.868935954138899 2.91074904185428 1.032534597046133 0.9387447823374151 0.42279462587378736 0.04519773727620024 0.23654663586999408 3.856854070459695 0.014789248620608304 0.015925136292286802 739.4962127373734 -2.868935954138899 -0.09378981470871794 SVAVS(ph)DEEEVEEEAER ddPTM_BT-474_Trastuzumab_2h_R1 5 SVAVSDEEEVEEEAER 16 0 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER 328.8 1.8253999999999997e-71 4614228200.0 1209630.9 1422385.2999999998 1444952.3 1546293.5 1298323.3 1480271.4 1388786.9 1257487.5 1418314.9000000001 1405274.9 True False 1203118.3816370282 1469728.534860427 1648389.0240894598 1742054.098554957 1463657.0764898967 1377943.7223020655 1321605.971965839 1351327.6026421413 1068790.1973409653 1315589.0527656274 0.9145092680026763 1.1171638527781667 1.2529665100391503 1.3241628112462749 1.1125488414585096 1.0473967683186145 1.0045735552356283 1.0271654357425553 0.8124042953186313 1.0 20.327277477755725 2.326127916539436 1.406421201732918 0.949997769071063 1.1578648137803327 0.3739886265552459 0.11284389621919257 0.47904658698100744 1.8873816763974112 0.06689419077437254 0.042824717650398504 211.89851665152813 -2.326127916539436 0.20786704470926964 SVAVS(ph)DEEEVEEEAERR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVAVSDEEEVEEEAERR 17 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 SVAVS(1)DEEEVEEEAERR;SVAVS(1)DEEEVEEEAERR 232.54 6.806100000000001e-17 809920000.0 142633.0 153541.0 126329.0 144680.0 162667.0 163551.0 152155.0 144470.0 170457.0 157637.0 True False 141865.079776016 158651.51936750565 144115.0251286478 162996.47316562553 183381.6782471533 152245.10432764216 144794.68136145442 155251.08500379542 128450.15635677862 147576.47170017438 0.9612987635606169 1.075046161083401 0.9765447260552544 1.1044882106734426 1.2426213754433906 1.0316353452124323 0.981150177215433 1.0520043148830205 0.8703972582956585 1.0 17.171103203509816 2.478158060505787 24.510359326618357 0.9902516343517558 1.0755166630333075 0.21924307336160898 0.08364272944756816 53.79190256965516 1271726.1390095884 0.02973623424960674 0.025192357527875624 300.7170556491783 -2.478158060505787 0.08526502868155172 SVCPGGS(ph)SPGSSSGGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVCPGGSSPGSSSGGGR 17 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 SVCPGGS(0.5)S(0.5)PGSSSGGGR 70.26 0.03463 60793000.0 116340.0 122320.0 128190.0 137660.0 125290.0 142670.0 147460.0 125110.0 139160.0 134950.0 True False 115713.63836658909 126391.34725599851 146238.03775254573 155087.74188540236 141244.938847989 132807.55870905524 140326.7964480962 134446.3434957074 104865.88264846458 126337.37546349231 0.9159097847495402 1.0004272036862265 1.1575199913409957 1.2275681785887504 1.117998045549114 1.0512135321936669 1.1107306601334805 1.0641850284008658 0.8300463917644677 1.0 16.9469219814881 1.3542349851952815 6.669725096006559 0.9169982674823322 1.087746091274944 0.35758426768029306 0.08884218643713757 0.2258113016794122 11.768386383757836 0.06354075175527173 0.022968869561881922 22.60658621629073 -1.3542349851952815 0.17074782379261177 SVDALDDLT(ph)PPSTAESGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVDALDDLTPPSTAESGSR 19 0 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 SVDALDDLT(0.988)PPS(0.008)T(0.004)AESGSR 139.9 2.0162e-06 289680000.0 183300.0 378300.0 344450.0 305470.0 413920.0 436160.0 353280.0 301270.0 296850.0 330940.0 True False 182313.13316654466 390891.4868128204 392945.5659869287 344142.47067945503 466630.2585039474 406009.2858102021 336190.4967393427 323752.29721806187 223695.2950862078 309819.12586801156 0.5884502212565575 1.2616764240027813 1.268306354186573 1.1107851063593337 1.506137676931992 1.3104719880436604 1.0851186020147956 1.0449719535907092 0.7220189988577592 1.0 18.24106668229325 1.580201615709385 2.5224159802494235 0.8657661282689403 1.189617814286022 0.1970640174280084 0.23376694530458844 0.36734137302609504 5.21117556652542 0.16797846310016892 0.06285557332747675 38.036593540448685 -1.580201615709385 0.3238516860170818 SVDCFLHDFASK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVDCFLHDFASK 12 0 O00186 O00186 STXBP3 Syntaxin-binding protein 3 0 161.1 6.6268e-05 388230000.0 489400.0 545730.0 479040.0 510640.0 504130.0 610300.0 581470.0 548530.0 736010.0 587070.0 False True 486765.12477745215 563894.2931492492 546484.6681096774 575286.971642901 568327.9672873869 568111.3974916689 553342.0746688904 589464.0939789014 554630.1975287178 549602.6899840854 0.8856672895679372 1.0260035174965711 0.994326771081673 1.046732452600549 1.0340705706950666 1.033676522777062 1.0068037961839549 1.0725276726647213 1.009147530818632 1.0 19.068029539759497 5.557591195955875 1.4039089769832638 1.0314421756363144 3.0842610532429937e-15 0.749816944295714 0.023705857332071728 4.84214732771725 1.511334165206632 0.006070045396772815 12.245304080439782 361069.82539672137 -5.557591195955875 -1.0314421756363112 SVDEALR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVDEALR 7 0 P32119 P32119 PRDX2 Peroxiredoxin-2 0 ;; 207.55 0.0004486000000000001 6685200000.0 8572200.0 10342100.0 9956700.0 9809400.0 8831800.0 9695500.0 10157700.0 8532900.0 11467300.0 9615200.0 False True 8526048.227660963 10686330.546568526 11358516.814812168 11051269.034219567 9956477.379820164 9025272.905752067 9666333.244817765 9169668.327188255 8641337.568947526 9001549.704013128 0.9471755984261051 1.1871656434673996 1.261840148452243 1.2277073834622743 1.1060848084170778 1.0026354575066516 1.0738521213195389 1.0186766311027728 0.9599833198826853 1.0 23.101741966080986 2.9257619346002914 3.9767660901114197 1.0186194835928608 1.1662628227697422 0.4035442172047642 0.08291267474438832 0.2375272278955229 7.155358815275372 0.026528470047389598 0.028971884438107665 842.8725971398466 -2.9257619346002914 0.14764333917688144 SVDETLR ddPTM_BT-474_Trastuzumab_2h_R1 6 SVDETLR 7 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;Q13162;H7C3T4 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 ;;;;; 199.65 0.00086569 9253850000.0 7206980.0 8620490.0 7905680.0 8292050.0 8094790.0 7989930.0 8527990.0 7310670.0 9132730.0 8221750.0 False True 7168178.420450746 8907417.798453745 9018731.026597602 9341822.67979696 9125613.524920681 7437604.945372137 8115458.543614553 7856229.318230058 6882091.063812238 7697030.8760056915 0.9312913688311214 1.1572537439366715 1.1717155838249405 1.2136917248076338 1.1856017822883336 0.9662953241564517 1.0543622176329377 1.020683097780034 0.8941228344641435 1.0 22.875870603892434 2.73485942136147 24.924727858643454 0.9966467464874447 1.1400735380310452 0.43260555109269616 0.08229900675845198 309.02409266017537 2081033.6626161728 0.02664909795010999 0.026064267161715 543.0745129261609 -2.73485942136147 0.1434267915436005 SVDFEMPPPS(ph)PPLNLHELSGPAEGASLTPK ddPTM_BT-474_Trastuzumab_2h_R1 15 SVDFEMPPPSPPLNLHELSGPAEGASLTPK 30 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7;Q9C0H9-4 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(0.967)PPLNLHELS(0.033)GPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK;S(0.002)VDFEMPPPS(0.993)PPLNLHELS(0.005)GPAEGASLTPK;SVDFEMPPPS(1)PPLNLHELSGPAEGASLTPK 298.87 5.254499999999998e-81 13443085000.0 5024025.0 5236442.0 4970918.0 4766015.0 4911813.0 5638877.0 5553952.0 5462953.0 6905893.0 5738322.0 True False 4996976.207621655 5410733.806473967 5670780.046406194 5369392.010329471 5537303.270953455 5249074.70547867 5285286.123602998 5870626.293173244 5204028.2043751925 5372097.377135363 0.9301723064235037 1.007192056775264 1.0555988933748817 0.9994964039897327 1.030752587345352 0.9770996943986346 0.9838403425258355 1.0927996797228048 0.9687144217683945 1.0 22.357054025287784 4.722503392929267 4.3310076699707585 1.0186693434712186 0.9248224840458451 0.3111679982998482 0.03630293309277635 0.21598326121520195 9.533952605585496 0.008747688577897464 0.06054695278561601 52784.1330530271 -4.722503392929267 -0.09384685942537352 SVDIS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVDISPTR 8 0 Q9P2Q2 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 1 SVDIS(0.88)PT(0.12)R 87.29799999999999 0.016178 573870000.0 706750.0 899150.0 862900.0 823650.0 893380.0 846660.0 872680.0 847920.0 935690.0 863090.0 True False 702944.9365273076 929077.6642023461 984388.8195387445 927924.0055492626 1007146.6475218807 788132.3870232633 830465.1344386602 911196.0960505177 705101.7371036339 808006.8572714753 0.8699739738608817 1.1498388359471476 1.2182926551674156 1.1484110527016202 1.2464580448275802 0.9754030921032957 1.0277946615985702 1.1277083701090087 0.87264325885137 1.0 19.624008011113848 2.7148835797782316 24.874364011723586 1.0206450584597038 1.1341925884785882 0.22885562508409762 0.11217222060516742 1256.9099600004663 1320469.327219898 0.03661507322643575 0.03453876463928991 518.6609841554225 -2.7148835797782316 0.1135475300188844 SVDISLGDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVDISLGDSPR 11 0 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9;H0YDE2;Q6IQ23-3 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 1 SVDISLGDS(1)PR;SVDISLGDS(1)PR;SVDISLGDS(1)PR;SVDISLGDS(1)PR 185.95 4.4517e-06 1051950000.0 906808.0 998950.0 927100.0 869497.0 879910.0 1050570.0 1040923.0 948834.0 1201950.0 1049080.0 True False 901925.8464838405 1032199.4468719743 1057627.6215023408 979575.2310484633 991961.3228648249 977946.5686757708 990569.5777779847 1019640.8111614248 905745.5278048433 982126.816237424 0.9183394970714297 1.0509838747977385 1.0768748027410187 0.9974019799207439 1.0100134793845437 0.9957436784206056 1.0085964066971567 1.0381966914086704 0.9222286906642044 1.0 19.905549797698 1.249127581559198 24.99993627516927 0.9611143314298354 1.0153018344270712 0.17767009909632026 0.04334784794434249 284.07310067839586 672087.6172176716 0.028518068802153778 0.01017645973553533 17.747107564777362 -1.249127581559198 0.05418750299723585 SVDLHPTEPWMLASLYNGSVCVWNHETQTLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVDLHPTEPWMLASLYNGSVCVWNHETQTLVK 32 0 P35606;D6R997 P35606 COPB2 Coatomer subunit beta 0 ; 212.28 6.2888e-28 501840000.0 384860.0 438510.0 470650.0 441210.0 464550.0 515010.0 543830.0 444120.0 565430.0 482310.0 False True 382787.95652196574 453105.54026510677 536913.4290368651 497067.14076171914 523707.6888964273 479408.57090313744 517522.86526765407 477262.48959566455 426087.35287382366 451528.56287363486 0.8477602260326842 1.003492530752508 1.189101804811241 1.1008542573658375 1.1598550611359497 1.0617458347531052 1.1461575364668313 1.0569929099462787 0.9436553695786213 1.0 18.784457727287492 4.613054960531223 3.443579218704641 1.089038587468271 0.8442337481030178 0.49903044065707103 0.07088548486857942 0.19707124310359614 3.782048181562982 0.016927495324393686 0.10056085280013176 41025.60181339587 -4.613054960531223 -0.24480483936525332 SVDPTLALSVYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVDPTLALSVYLR 13 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 135.55 0.00019236 375710000.0 155777.0 230050.0 218920.0 207027.0 180185.0 208086.0 238960.0 200388.0 250420.0 199657.0 False True 154938.31394045174 237707.07518183836 249742.03311324827 233236.5969730435 203130.4917098324 193701.50460175567 227400.591884152 215341.9701096461 188707.34645608257 186914.7193250425 0.8289251616990946 1.271740802651655 1.3361282301098492 1.2478235947135217 1.086754924616669 1.0363095282234622 1.2166007722950114 1.152086742484785 1.0095906151078595 1.0 17.512020658613977 3.220197172013191 24.8190405853466 1.102066134633845 1.1901230391319733 0.06913025469152545 0.14174627890170055 608.7204327626015 822711.267626905 0.04141534975562984 0.04959272706153529 1660.3405398165753 -3.220197172013191 0.08805690449812831 SVDVILDDDLVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVDVILDDDLVDK 13 0 P25205;P25205-2;J3KQ69;A0A499FHX9 P25205 MCM3 DNA replication licensing factor MCM3 0 136.7 0.00016124 10685000.0 23305.0 22040.0 18423.0 20146.0 19055.0 24563.0 23859.0 22582.0 30001.0 26838.0 False True 23179.52846942891 22773.588076538646 21016.798264413374 22696.481534384082 21481.54130216643 22865.017625082557 22704.849019768957 24267.18350907252 22607.655542803845 25125.17586283221 0.9225618398046119 0.9064051213359952 0.8364836281804349 0.9033362257160991 0.8549807340431068 0.9100440828717495 0.9036692576292111 0.9658512896210641 0.899800887612789 1.0 14.616846073972278 1.2165574005865343 0.5862133299193724 0.9950941209705374 0.8829807483036343 0.5095262529506115 0.03132743471662037 0.5891242004233788 0.5046496093711328 0.031404317111072645 0.014928589712169971 16.46483567244425 -1.2165574005865343 -0.11211337266690313 SVEDEMDS(ph)PGEEPFYTGQGR ddPTM_BT-474_Trastuzumab_2h_R1 8 SVEDEMDSPGEEPFYTGQGR 20 0 Q12857-3;A0A590UK09;B1AKN8;Q12857-2;Q12857;Q12857-4;B1AKN5;A0A590UJU2;A0A590UK38;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 Q12857-3 NFIA Nuclear factor 1 A-type;Nuclear factor 1 1 SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR 377.21 1.8622999999999996e-112 4332340000.0 3241540.0 3714540.0 3129520.0 3406040.0 3456840.0 3611430.0 3592230.0 3498200.0 4034100.0 3636510.0 True False 3224087.9088089545 3838176.2184131574 3570129.2137245242 3837244.314770852 3897048.0837040697 3361780.3444917887 3418460.111248778 3759253.447499668 3039950.109170531 3404424.818427154 0.9470286702640374 1.1274081300424772 1.0486732426577496 1.1271343969768324 1.1447008794585478 0.9874738094656862 1.0041226619973087 1.1042257203483923 0.892940884673432 1.0 21.69897964312756 2.7182415148815724 24.891047901863598 1.0129465282628827 1.0826695472248398 0.23046626918773616 0.0714201151304322 1339.5004947988289 1640894.3859318146 0.022820954161826446 0.021537678338933757 522.6867787869376 -2.7182415148815724 0.0697230189619571 SVEDRFDQQK ddPTM_BT-474_Trastuzumab_2h_R1 3 SVEDRFDQQK 10 1 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;; 120.32 0.0005252000000000001 1419900000.0 1318410.0 1200460.0 1291290.0 1200560.0 1265910.0 1325370.0 1935540.0 860810.0 2470480.0 1549990.0 False True 1311311.8270491227 1240416.5854066068 1473092.407906113 1352550.7729038084 1427116.134863577 1233750.2914853925 1841910.535719168 925048.0133046114 1861663.306735977 1451068.3111867972 0.9036871778811221 0.8548299041773554 1.0151778496915165 0.9321068915064284 0.9834934192011745 0.8502358448420219 1.2693479152698948 0.6374944626473407 1.2829604866867799 1.0 20.468684007330243 7.999999999999998 0.26031918690183775 0.9964749352178984 0.23979381329382884 0.04782960229119093 0.17849032119622815 219.9288188566484 3.0440603965820068 0.20443273915594062 73.87469572733511 99999999.9999996 -7.999999999999998 -0.7566811219240696 SVEDVRPHHTDANNQS(ph)ACFEAPDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.281)VEDVRPHHT(0.303)DANNQS(0.416)ACFEAPDQK 59.324 0.040505 581660000.0 474740.0 435650.0 413730.0 421290.0 379480.0 560820.0 519310.0 220170.0 741690.0 463050.0 True False 472184.0525885725 450150.3468940141 471979.58779437345 474625.27080416266 427804.5286458204 522051.83342827845 494188.9913431501 236600.2034006068 558910.4376368184 433497.75256295025 1.0892422158982344 1.038414488270376 1.0887705530280347 1.0948736596627224 0.9868667740871319 1.2042780622085667 1.1400035834589168 0.5457933795544857 1.2893041182621965 1.0 18.72566498835753 SVEEEEQVWR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVEEEEQVWR 10 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 ; 213.85 3.4199e-08 1251350000.0 694950.0 806650.0 808420.0 772600.0 710040.0 773710.0 771270.0 729720.0 789550.0 712140.0 False True 691208.4664162031 833498.8576197774 922238.5090873948 870411.0807835376 800459.3852631978 720225.248817433 733960.7235624797 784175.411843078 594975.9819279611 666690.6155062725 1.0367754552706763 1.2502033750495105 1.3833080706964263 1.305569720855548 1.2006459467789925 1.0802990653625855 1.100901537372209 1.1762208640773946 0.8924319138287965 1.0 19.346657893980357 2.83044862788297 3.157260322028511 1.0730004440217893 1.2544318690899794 0.41925157435269744 0.10785773749243548 0.2857510736274825 5.491050811523516 0.03608915536073486 0.038130872560251904 676.7817325731095 -2.83044862788297 0.1814314250681901 SVEEGKIDGIIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVEEGKIDGIIDK 13 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 157.75 4.361100000000001e-05 279820000.0 598630.0 454010.0 401290.0 439270.0 381280.0 630380.0 612120.0 554990.0 926720.0 607970.0 False True 595407.0425940459 469121.4483951591 457788.14392479224 494881.5369606316 429833.74797638453 586803.3143549054 582509.4170745194 596406.1719821168 698342.2734117929 569168.8340906961 1.0460991658920817 0.8242219536574369 0.8043099279252603 0.8694810877184697 0.7551955100687949 1.030982863445751 1.0234387095441309 1.0478545841936955 1.2269510057195319 1.0 19.118497140985344 2.5963584250505605 5.479405707524278 1.0680841493511686 0.8558912500005048 0.5642652581062585 0.09093839225745572 0.17027896742260926 6.98559281898261 0.02948723516276935 0.027639897368952542 394.78298370959305 -2.5963584250505605 -0.21219289935066377 SVEELLEAELLK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVEELLEAELLK 12 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 Q86UP2-2 KTN1 Kinectin 0 145.55 0.00014888 6018600.0 21312.0 21844.0 21417.0 16364.0 19412.0 22624.0 25130.0 23757.0 24637.0 24789.0 False True 21197.258559985785 22571.064335023148 24432.327440098845 18435.680722161287 21884.003136061638 21060.05613116752 23914.36589407746 25529.867975601635 18565.541468886324 23206.944797069355 0.9134015160264716 0.9725995615706162 1.052802411249939 0.7944036099266889 0.9429937170715043 0.9074893879967797 1.0304831636906138 1.100096035856716 0.7999993808418434 1.0 14.502268983393257 2.23925762353287 24.999998776286883 1.0040869609523249 0.9324486301579872 0.050153146030766815 0.09371951039693877 42.18392679972008 1513120.2725199235 0.03376029940684764 0.02669885801989847 173.4832795581389 -2.23925762353287 -0.07163833079433768 SVEETLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVEETLR 7 0 P30048-2;P30048 P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial 0 141.78 0.020011 0.0 151450.0 176880.0 145390.0 141530.0 178370.0 199130.0 151060.0 137340.0 205770.0 185390.0 False True 150634.6100276769 182767.34387378226 165859.6482474657 159447.6834886022 201084.36221818038 185364.61180159939 143752.65069476064 147589.00819838897 155060.7406767357 173558.25147963568 0.867919610525412 1.0530605276075111 0.9556425398012649 0.9186983743455773 1.1585986866304334 1.0680253472324766 0.8282674518164741 0.8503716011203662 0.8934218877800209 1.0 17.405060431281626 2.2348610509913165 24.99995396890381 0.8754461048255413 1.0069016102332522 0.2664963889833277 0.08791669217300613 110.87165049428636 749209.5071805043 0.03240501939458556 0.024860505795143505 171.7358844172155 -2.2348610509913165 0.1314555054077109 SVEGWILFVTGVHEEATEEDIHDK ddPTM_BT-474_Trastuzumab_2h_R1 3 SVEGWILFVTGVHEEATEEDIHDK 24 0 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 0 ;; 342.99 6.996099999999996e-88 941400000.0 652537.0 595695.0 493876.0 430840.0 461118.0 611810.0 624940.0 508996.0 797190.0 611640.0 False True 649023.8132956768 615522.3479697676 563409.4479528537 485384.2998249797 519838.64403948496 569517.0147458268 594709.2646973645 546979.8661493175 600733.2062987168 572604.6115486502 1.1334589351984878 1.074951782705772 0.9839415132006578 0.8476779439694401 0.9078492096554097 0.9946078031148357 1.0386036938978376 0.9552487966696098 1.0491239402944919 1.0 19.127179763760417 4.334589037940348 3.1399001348632263 0.9669342562524271 1.1226355217350745 0.4797813384075441 0.05646827685655514 0.21500738698781574 4.063345392810427 0.015218700990288696 0.05220598381968702 21606.729649963167 -4.334589037940348 0.1557012654826474 SVENQES(ph)VEIINDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVENQESVEIINDLK 15 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 SVENQES(1)VEIINDLK;SVENQES(1)VEIINDLK 237.0 1.054e-17 112975000.0 119813.0 104840.0 99462.0 118143.0 79674.0 105573.0 96955.0 114557.0 178910.0 146711.0 True False 119167.94012047575 108329.53602288173 113465.38506079798 133099.89168652522 89820.01163520364 98274.98700211052 92264.91624593221 123105.8250486591 134820.02777117558 137347.77837439373 0.8676364592926876 0.7887243412673796 0.8261173671954476 0.969072039328592 0.6539604258495173 0.7155193055560358 0.6717612569926614 0.8963073629999841 0.9815959847830388 1.0 17.067474049181367 1.4871874582805564 4.349493975555225 0.9812214685406565 0.7853732932311274 0.47130252920832594 0.08827491609000358 0.17431974044722462 6.931024992538417 0.06051865644202424 0.024075567863497092 30.703469828144478 -1.4871874582805564 -0.19584817530952914 SVEST(ph)SPEPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVESTSPEPSK 11 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;P18583-8 P18583-7 SON Protein SON 1 SVEST(0.72)S(0.279)PEPSK 292.73 1.9139e-34 94287000.0 261860.0 244500.0 229600.0 211710.0 221430.0 289140.0 276750.0 259410.0 377930.0 283390.0 True False 260450.17485538096 252638.0346966291 261925.68428102403 238512.46429288492 249627.7979815647 269152.4323623487 263362.54521233344 278768.49145728955 284794.2155025451 265303.8075776145 0.9817053785750376 0.9522593625902634 0.9872669626288639 0.8990163634312267 0.9409129867408187 1.014506481531021 0.9926828703175956 1.0507519436023773 1.073464486254042 1.0 18.01728585537064 2.319201408171113 1.595795393828174 1.0422216116504364 0.9525012697497479 0.5739901516001514 0.031672519424847646 0.2641426460010423 1.3528153898988582 0.01650397523942429 0.010887338026633688 208.5457809641124 -2.319201408171113 -0.08972034190068845 SVESTS(ph)PEPSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SVESTSPEPSK 11 0 P18583-7;P18583;P18583-5;P18583-9;P18583-10;P18583-3;P18583-4;P18583-2;P18583-6;P18583-8 P18583-7 SON Protein SON 1 SVES(0.001)T(0.197)S(0.802)PEPSK;SVEST(0.208)S(0.792)PEPSK;SVEST(0.001)S(0.999)PEPSK;SVEST(0.019)S(0.981)PEPSK;SVEST(0.002)S(0.998)PEPSK;SVES(0.001)T(0.112)S(0.887)PEPSK 339.87 6.8045e-58 5066750000.0 9345940.0 8694120.0 7849550.0 7596260.0 7828060.0 9561270.0 9583120.0 9394180.0 12484340.0 9466750.0 True False 9295622.497471556 8983498.528493475 8954698.41048831 8557945.737137912 8824917.040453259 8900321.90970862 9119547.874526516 10095221.41427948 9407741.688585294 8862573.910107557 1.048862620696468 1.0136444129676603 1.0103947793626507 0.9656275732017057 0.9957510233442058 1.0042592592156565 1.02899541002709 1.1390845951384527 1.0615134817500351 1.0 23.079294323191252 1.9666515567232967 10.749542346488996 1.0827922825572744 1.0055814009470467 0.316585568913592 0.037593045433110706 0.6815995477192007 217.30719692723991 0.015131395506556091 0.009781340410323226 92.60865072310166 -1.9666515567232967 -0.07721088161022771 SVFALTNGIYPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVFALTNGIYPHK 13 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 ; 205.96 6.5679e-08 6148400000.0 3821000.0 4189800.0 3975800.0 3845000.0 4142300.0 4476500.0 4635600.0 4263200.0 5471700.0 4687100.0 False True 3800428.160553012 4329254.960212419 4535558.081726901 4331776.605763267 4669797.351664335 4167050.0915475367 4411358.318288312 4581341.632090956 4123272.852023594 4387965.265171798 0.8661026081308821 0.9866201527561361 1.0336358215336339 0.9871948258445634 1.064228422391922 0.9496543021026826 1.005331184661417 1.0440697123229363 0.9396776416511035 1.0 22.065120674836763 4.725442303638647 3.7210125901709277 1.0065715052361974 0.8530094795630938 0.5479848740319662 0.03691483794713678 0.17002305358285186 4.482527162821715 0.00839445893139025 0.07061633751255393 53142.53945377777 -4.725442303638647 -0.15356202567310362 SVFDIPIFTEEFLNHSK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVFDIPIFTEEFLNHSK 17 0 Q9NP66 Q9NP66 HMG20A High mobility group protein 20A 0 215.79 5.5029e-15 73163000.0 145380.0 133360.0 139570.0 155050.0 133350.0 164800.0 171960.0 162780.0 185150.0 151180.0 False True 144597.2902332365 137798.80698217763 159220.2428358125 174679.31410236532 150331.33207262616 153407.76389747206 163641.63784900747 174927.47018009142 139522.2633828915 141531.56296829003 1.0216610853483852 0.9736259820224784 1.1249804601641091 1.23420748304392 1.0621753121337867 1.0839120312113197 1.1562200997220047 1.2359608451387178 0.9858031696728404 1.0 17.11076429894263 4.23094269304956 24.341275352282914 1.1284768665471339 0.9976435235537261 0.20705451751922943 0.082408361367287 134.64674688879782 430239.60820384277 0.02022964576839107 0.045110058738289896 17019.339163684275 -4.23094269304956 -0.13083334299340776 SVFDVLDGEEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVFDVLDGEEMR 12 0 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 ; 134.75 0.00032552 22026200.0 50742.0 68583.0 59010.0 58320.0 59535.0 61910.0 65344.0 59489.0 66584.0 66945.0 False True 50468.81070996616 70865.743695701 67318.0950758851 65703.30602031562 67116.4293584087 57630.3074204641 62183.06108167914 63928.371259021165 50175.26537988905 62672.512785501924 0.8052782386865003 1.130730850671978 1.0741247172629376 1.0483592104434467 1.0709069474861521 0.9195467815006096 0.9921903290283263 1.0200384254229193 0.8005944416432611 1.0 15.935545217106895 2.739766111029666 24.986227567857018 0.9575273052760384 1.035634148215345 0.13027981097575803 0.09898403494646213 228.61327060413842 4738499.844660332 0.030063983165461404 0.03034592899812906 549.2449987074104 -2.739766111029666 0.0781068429393067 SVFDVLDGEEMRR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVFDVLDGEEMRR 13 1 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 133.32 0.00017406 158100000.0 79092.0 110790.0 93881.0 109690.0 110560.0 91128.0 101160.0 95303.0 123080.0 115850.0 False True 78666.17745994726 114477.57817603082 107098.62877171968 123576.74275323082 124639.16065953916 84828.53585223811 96266.50433127246 102414.99379882825 92748.58318750373 108456.35381582497 0.7253256696563314 1.0555174883569365 0.9874813692666553 1.1394145055169613 1.1492103161719323 0.7821444559743322 0.8876059441823695 0.944296854868864 0.8551696597232525 1.0 16.72675504888607 2.73372820694645 24.991319908199923 0.8944334392789853 1.0196256324462616 0.1878146450983228 0.1216154855674421 685.3444776971223 3544318.0021627806 0.038985321291534036 0.03781059934169105 541.6617979266571 -2.73372820694645 0.12519219316727626 SVFKPIVQIAVIENSESLDCQLLAVTHAGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVFKPIVQIAVIENSESLDCQLLAVTHAGVR 31 1 O75694;O75694-2;E9PF10 O75694 NUP155 Nuclear pore complex protein Nup155 0 ; 270.95 8.995899999999997e-72 526859000.0 413456.0 432102.0 439331.0 398128.0 396241.0 544815.0 510671.0 439922.0 529180.0 555362.0 False True 411229.99883527955 446484.25385882554 501184.9860664927 448530.963979016 446699.9426455905 507153.22140656103 485967.89277733484 472751.2135186518 398770.67964870937 519918.32169067056 0.7909511584397366 0.858758453456589 0.963968694999513 0.8626950527930674 0.8591733047471986 0.9754478737302429 0.9347004567891823 0.9092797729869554 0.766987165122373 1.0 18.98792547048415 4.55159478203219 3.9110403088679364 0.9066723833859145 0.7961943420184707 0.24342464887797188 0.06439499764049408 0.3275720629193327 9.004044004269868 0.01506510866763106 0.07228232410470203 35611.87022167701 -4.55159478203219 -0.11047804136744377 SVFPEQANNNEWAR ddPTM_BT-474_Trastuzumab_2h_R1 6 SVFPEQANNNEWAR 14 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;;;; 290.61 4.2623e-43 1193948000.0 253829.0 280177.0 252214.0 303514.0 289947.0 295820.0 288619.0 261685.0 307718.0 292372.0 False True 252462.4128670529 289502.5220744269 287723.5389166128 341938.84128000884 326870.0317994883 275370.65968537703 274657.3963383503 281213.26350950514 231885.02210994659 273712.56864773773 0.9223632444587032 1.0576880831768105 1.0511886258570278 1.2492624762148825 1.1942090690769962 1.0060577818761887 1.0034518973508613 1.0274035456202255 0.8471844141303488 1.0 18.062302157986725 2.535385080665442 10.012344194733911 0.9820740937077972 1.099229461080392 0.28616179029504873 0.0937417601879998 0.8862143916087484 149.3611456811677 0.03228797895884489 0.03037986167786702 343.07184701253874 -2.535385080665442 0.11715536737259491 SVGEGPY(ph)SELAKLS(ph)GS(ph)FLKELEKS(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 SVGEGPYSELAKLSGSFLKELEKSK 25 3 A0A494C197;A0A494C0X3;A0A494C1J4;A0A494C1U2;P01213 A0A494C197 PDYN Proenkephalin-B;Alpha-neoendorphin;Beta-neoendorphin;Big dynorphin;Dynorphin A(1-17);Dynorphin A(1-13);Dynorphin A(1-8);Leu-enkephalin;Rimorphin;Leumorphin 4 S(0.003)VGEGPY(0.966)S(0.325)ELAKLS(0.879)GS(0.879)FLKELEKS(0.948)K 40.544 0.06813 569000000.0 230570.0 146760.0 152050.0 113800.0 160980.0 241790.0 239120.0 240090.0 357790.0 251270.0 True False 229328.63673873513 151644.81788170672 173457.31835770785 128207.068331823 181479.84879678584 225075.62641243773 227552.85207289303 258006.73495231709 269617.4486403714 235233.73347693012 0.974896896584885 0.6446559158003538 0.7373828395863095 0.5450199103539567 0.7714873462848132 0.9568169627954801 0.9673478744289438 1.0968101009102096 1.1461683010137376 1.0 17.843735437800632 2.5463582559406457 1.8276612771605543 1.0705681746033986 0.7150681095618006 0.6541721583700231 0.11069753225900943 0.20356784669763803 1.367925020916966 0.04568392181526132 0.0386248882358668 351.85056758330575 -2.5463582559406457 -0.35550006504159803 SVGGS(ph)GGGSFGDNLVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 SVGGS(0.999)GGGS(0.001)FGDNLVTR 189.41 3.7393e-10 212720000.0 307900.0 256190.0 242160.0 258240.0 242520.0 312490.0 284700.0 261510.0 344780.0 277010.0 True False 306242.3006109057 264717.12927987473 276254.0231075472 290933.1575220563 273403.48447134113 290888.301822336 270927.9733403842 281025.20412087336 259813.58881530332 259330.98463980758 1.1808936021904772 1.0207693833714013 1.0652565234009523 1.1218603821141617 1.0542646296241047 1.1216874151245726 1.0447188704299413 1.0836545602570302 1.0018609584048201 1.0 17.98443506287116 1.2342255207695392 6.576261999013674 0.9997631182088869 1.0831364406844215 0.3792708016368209 0.04366656803615731 0.13787480892026446 26.980122015125453 0.03280513831074903 0.009794869158441476 17.148475636917272 -1.2342255207695392 0.08337332247553464 SVGGSGGGS(ph)FGDNLVTR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 SVGGSGGGS(1)FGDNLVTR;SVGGSGGGS(1)FGDNLVTR;SVGGSGGGS(1)FGDNLVTR;SVGGSGGGS(1)FGDNLVTR 280.4 6.742799999999999e-36 1909620000.0 1484020.0 1499570.0 1336060.0 1670560.0 1245110.0 1429200.0 1209150.0 1312980.0 2028240.0 1733030.0 True False 1476030.2012101219 1549482.2809407916 1524165.6347582976 1882052.724713622 1403667.3781548385 1330402.7679749222 1150658.795098438 1410961.234777346 1528407.4290235802 1622426.54167837 0.9097670454054556 0.9550400225441832 0.9394358361405852 1.160023382486503 0.8651654433012238 0.8200080150307733 0.7092208895375336 0.8696610900594198 0.942050311530574 1.0 20.62972172837727 3.033528708179056 24.999986332107323 0.8472987958948132 0.9882790545680337 0.27227530612900475 0.09578967459448473 216.41850456065188 161366.61152943017 0.027674455049853757 0.0330771586348818 1080.2610270436123 -3.033528708179056 0.1409802586732205 SVGKPALER ddPTM_BT-474_Trastuzumab_2h_R1 3 SVGKPALER 9 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33;Q9NY33-2 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;; 93.111 0.0087741 2109680000.0 2969810.0 3153690.0 3275280.0 2775640.0 2461470.0 3205130.0 3301410.0 2820590.0 4462630.0 3274370.0 False True 2953820.8729369077 3258658.6652041357 3736410.954755898 3127035.7394072213 2774923.614224277 2983566.9071644708 3141708.1856890675 3031076.7484658067 3362874.632678339 3065396.9032708053 0.9636014409048156 1.0630462442651778 1.218899565915629 1.0201079462403864 0.9052412140377023 0.9733052525697338 1.024894421448928 0.9888040094356529 1.0970437887146431 1.0 21.54764245345508 3.494019994854445 24.83708359223558 0.9948280013541866 1.086557961545684 0.20733288759698454 0.07286255766401667 973.3395983759774 1430572.1518480703 0.01977944973012093 0.02981964530323867 3119.0331806199047 -3.494019994854445 0.09172996019149737 SVGRPS(ph)PLASGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVGRPSPLASGR 12 1 Q92738;X6RAB3;Q92738-2 Q92738 USP6NL USP6 N-terminal-like protein 1 S(0.002)VGRPS(0.997)PLAS(0.001)GR;SVGRPS(0.999)PLASGR 75.376 0.020577 502620000.0 316400.0 252170.0 186227.0 165368.0 174264.0 199447.0 219790.0 192050.0 299080.0 189509.0 True False 314696.53755534475 260563.32601001573 212446.1428858987 186303.57184443698 196455.4874563487 185659.69833773724 209157.91802066396 206381.74621013983 225375.74146667705 177414.37337318255 1.7737939242013714 1.468670892081181 1.1974573358779028 1.050104161811943 1.1073256564343525 1.04647495469384 1.1789231844294283 1.1632752312352157 1.2703353013716092 1.0 17.43676336995065 4.484016183124406 1.9094610839133572 1.1246488421910135 1.821761252219863 0.8895286754487544 0.07403961625952798 0.14629593026053397 0.8133564351215006 0.019818110594691775 0.1510914633240845 30480.085655191106 -4.484016183124406 0.6971124100288495 SVHELEK ddPTM_BT-474_Trastuzumab_2h_R1 6 SVHELEK 7 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;;; 143.61 0.0024101 8958340000.0 11049100.0 14338600.0 14054600.0 13960100.0 13788300.0 16295600.0 17139300.0 14142200.0 19312300.0 17455300.0 False True 10989612.873270411 14815851.633133253 16033365.51522686 15727447.228638718 15544158.275343018 15169123.527716296 16310206.580515783 15197562.776636494 14553042.436561808 16341287.809765806 0.6725059249432501 0.9066514099506325 0.9811567914277277 0.9624362174956463 0.9512199072862292 0.9282697731234495 0.9980979938905764 0.9300101040723483 0.8905688833082472 1.0 23.96201834681094 4.728281498439541 3.224940434743435 0.9528563045252325 0.6356695812284997 0.873926613161298 0.03204231726294588 0.09903891530098788 1.6575692845217527 0.0075599372706758984 0.07779382246446075 53491.09624926179 -4.728281498439541 -0.3171867232967328 SVHPYEVAEVIALPVEQGNFPYLQWVR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVHPYEVAEVIALPVEQGNFPYLQWVR 27 0 O60888-3;O60888;O60888-2 O60888-3 CUTA Protein CutA 0 191.42 4.8855e-18 335010000.0 76941.0 105660.0 101940.0 103400.0 110170.0 102430.0 115570.0 114850.0 105700.0 108850.0 False True 76526.75820494875 109176.82922718128 116292.265921636 116490.42939815915 124199.49647125017 95349.25519428427 109979.43757972671 123420.69019648316 79651.65130743539 101903.09980882643 0.7509757637256911 1.0713788828014124 1.1412044004530197 1.1431490270335154 1.2187999845368052 0.9356855225519402 1.0792550745370038 1.2111573684021824 0.7816411027423553 1.0 16.636838412209453 4.737300050559281 5.796417872077132 1.0839469953332963 0.7410188744169085 0.345737720433965 0.12712106869038428 0.13733162117930214 20.503576938668733 0.029106105618610986 0.18660839012294714 54613.50510851493 -4.737300050559281 -0.3429281209163878 SVIDLRPEDVVHES(ph)GSLGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVIDLRPEDVVHESGSLGDR 20 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 SVIDLRPEDVVHES(0.644)GS(0.356)LGDR 91.767 0.0010556 57765000.0 30885.0 56667.0 62363.0 71641.0 65052.0 72376.0 60543.0 50658.0 56846.0 59375.0 True False 30718.71859164607 58553.12683907515 71143.16833108678 80710.7432544827 73335.98660658776 67372.81747477816 57614.303793280196 54438.3571961118 42837.06499737436 55585.63666650504 0.5526377034403323 1.0533859167679243 1.2798840239596725 1.4520071747800567 1.3193333926636264 1.2120544355548577 1.0364962470241454 0.9793601451886478 0.7706498938634492 1.0 15.76242451812692 1.8112343294430802 2.169634702076594 0.8923270627336986 1.166191820269293 0.15699196675352656 0.2329871477803746 0.5356921226839674 4.8532245699534124 0.15712696852258398 0.07127121940369582 64.74918844898572 -1.8112343294430802 0.27386475753559436 SVIDYQTHFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVIDYQTHFR 10 0 Q9Y3B3;A0A0A6YYA0;Q86XR7-2;Q9Y3B3-2 Q9Y3B3 TMED7;TMED7-TICAM2 Transmembrane emp24 domain-containing protein 7 0 ; 175.15 2.888e-06 379640000.0 443500.0 648260.0 693180.0 599530.0 543800.0 616900.0 647230.0 461370.0 809950.0 568770.0 False True 441112.24527748267 669836.9422185541 790773.7187714305 675430.4365288046 613049.7066448749 574255.1550263988 615921.0122412947 495799.772189389 610348.6752739565 532470.6116515048 0.8284255236346922 1.257979177744656 1.4851030300409929 1.2684839721649563 1.151330595961807 1.078472956930516 1.156723016751969 0.9311307729296497 1.146257956623946 1.0 19.022342376123365 2.7346464413384 1.8118300983731388 1.044259805935821 1.2297931453021622 0.14682919497446345 0.16345028660769592 0.6014111105546689 3.9189920607392765 0.06440893398746099 0.06291611909542034 542.8082519657762 -2.7346464413384 0.1855333393663412 SVIEDVINDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVIEDVINDVR 11 0 J3KNC0;P52655 J3KNC0 GTF2A1 Transcription initiation factor IIA subunit 1;Transcription initiation factor IIA alpha chain;Transcription initiation factor IIA beta chain 0 ; 113.93 0.0030851 31513000.0 46255.0 67240.0 65129.0 59837.0 59842.0 55424.0 62728.0 58774.0 75428.0 60262.0 False True 46005.96821941361 69478.04275256164 74298.59708858379 67412.35806477416 67462.52398867712 51592.669334062404 59693.606995769616 63160.014328324694 56839.780083417485 56416.02756710615 0.8154769168157062 1.231530218428059 1.3169767580712155 1.1949150085866647 1.1958042226286014 0.914503759994331 1.0580966007357542 1.1195402627949416 1.0075112079773303 1.0 15.783817464278307 2.7713273399796567 24.90024735251482 1.0380527969383426 1.167085089862878 0.18459122480633905 0.13286663738987148 1092.3873684241132 830130.7793652256 0.0410627699121705 0.04354976648243746 590.6460990351117 -2.7713273399796567 0.12903229292453533 SVIEPLPVT(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVIEPLPVTPTR 12 0 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 SVIEPLPVT(0.987)PT(0.013)R 158.53 0.00081822 147810000.0 388450.0 383110.0 378680.0 369570.0 391490.0 526090.0 401700.0 395040.0 505820.0 492920.0 True False 386358.62836085196 395861.58475511457 431994.85245443543 416357.5241071347 441343.9309569737 489722.63658265193 382268.2363569804 424519.8907724746 381167.4386407467 461461.4235899567 0.8372501115156286 0.8578432876912967 0.9361451041643201 0.902258569888823 0.9564048225819654 1.0612428505352323 0.8283861159685031 0.9199466500794496 0.8260006560796352 1.0 18.8158505235611 4.3196609685112355 4.626717232755528 0.9251337022356217 0.8425236509912393 0.1899648309033941 0.06713138917270997 0.345148076188532 13.138632799802416 0.016436737788619073 0.04783934312838684 20876.657606839213 -4.3196609685112355 -0.08261005124438248 SVILDCTPTGTHDHYMLEWFLTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVILDCTPTGTHDHYMLEWFLTDR 24 0 P50895;A0A087WXM8 P50895 BCAM Basal cell adhesion molecule 0 156.74 1.2589e-08 171200000.0 38716.0 50462.0 64870.0 61322.0 69333.0 73157.0 65425.0 26429.0 49089.0 46419.0 False True 38507.55735775196 52141.597165076826 74003.13213985218 69085.35891251372 78162.14658111286 68099.82878305433 62260.14280222906 28401.266183742704 36991.67370889965 43456.49967869471 0.8861173274991347 1.1998572722284886 1.702924365446154 1.5897589410861823 1.7986295987716927 1.5670803973298713 1.4327003615699208 0.6535562319499679 0.8512345444848485 1.0 15.40728435297426 1.7737124145953764 8.292175974300365 0.8157472544362226 1.4772966761921573 0.5459542585748967 0.2578545445015248 0.15797738542597997 30.144655176083106 0.128625529547765 0.0719869295098683 59.38987546393414 -1.7737124145953764 0.6615494217559347 SVLEEYGQDLDQLGEGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVLEEYGQDLDQLGEGDR 18 0 I3L100;I3L2W2;Q96JN8-2;Q96JN8 I3L100 NEURL4 Neuralized-like protein 4 0 77.89399999999998 0.012832 0.0 8605.8 10392.0 9574.5 7838.5 7818.3 10372.0 8884.8 9494.9 9437.2 11485.0 False True 8559.467328994262 10737.89143790334 10922.506376954123 8830.853296300485 8813.914162305313 9655.008053061762 8455.00828076798 10203.45765212526 7111.528512001217 10752.017467196807 0.7960801175321963 0.9986861973265423 1.0158564576627092 0.8213205868798505 0.8197451491495035 0.8979717604178102 0.7863648200501214 0.9489807548448335 0.6614134076416531 1.0 13.39231976651181 3.7202306257558706 24.7228718415992 0.8491194393001457 0.943055461557012 0.13459059170145915 0.10292114418222881 1238.6978695561206 1670713.6799256774 0.02568603935811968 0.03987618942804893 5250.862256143876 -3.7202306257558706 0.09393602225686637 SVLGEADQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVLGEADQK 9 0 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 156.92 0.00016235 177331000.0 259310.0 272380.0 224825.0 257160.0 236697.0 299150.0 303590.0 288770.0 398880.0 312390.0 False True 257913.90377204926 281446.0036428128 256478.40578606844 289716.42963279114 266838.9599369662 278470.4646233539 288904.191873576 310319.4837443487 300581.3687181626 292453.00274946506 0.8818986344722051 0.9623631865524677 0.8769901603841118 0.9906426909932662 0.9124165504484781 0.9521887688118917 0.9878653635198638 1.0610918021935623 1.0277937511062618 1.0 18.157845276404842 2.1388578652984496 2.4082261092301644 1.0352287016065356 0.928575121078412 0.6232043405462 0.0353522449083787 0.17032178507539325 1.9642535148800724 0.015604153867709922 0.009852799328656271 137.67588133218763 -2.1388578652984496 -0.10665358052812357 SVLLLAYKPMEGNFEEIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVLLLAYKPMEGNFEEIAR 19 1 Q16531;F5GY55;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 ; 196.62 7.5362e-16 2669000000.0 1185540.0 1225660.0 1181960.0 1119260.0 1055170.0 1333410.0 1355970.0 1251850.0 1530670.0 1348310.0 False True 1179157.1843658776 1266455.352172885 1348369.6942195105 1260958.2012396874 1189539.6450174204 1241234.5052095167 1290376.5507915714 1345269.4037654973 1153456.88842717 1262259.7014537319 0.9341636931036095 1.0033239203583233 1.0682189193448912 0.9989689124888123 0.9423889898785801 0.9833432088341245 1.0222750114777945 1.0657627762465711 0.9138031477189245 1.0 20.26757733499634 2.24109302266969 24.99159875532715 1.012933375715836 0.991096530044939 0.0 0.04970464730114439 265.2274430982996 2617509.990412326 0.01839496060181293 0.01468960973127348 174.21799955149382 -2.24109302266969 -0.021836845670897054 SVLNSITEEVLDHMGTFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVLNSITEEVLDHMGTFR 18 0 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 0 ; 294.22 2.8995999999999994e-49 169128000.0 130162.0 147796.0 167189.0 155740.0 165941.0 159552.0 167024.0 152629.0 170673.0 149711.0 False True 129461.22225435759 152715.30051543115 190727.75796716093 175456.66803161823 187072.60274063513 148522.5457850088 158944.41102635858 164018.9510143578 128612.92605103027 140156.3158059643 0.9236916760396782 1.0896069837256126 1.3608217144577983 1.2518641562648136 1.3347425812734894 1.0596921368183432 1.1340510066375102 1.1702572950150139 0.9176391753125491 1.0 17.096677231840687 1.2457960962182562 24.845247473349914 0.9588195723277068 1.1727304221946977 0.305629678188564 0.12429390854024484 166.61236036866876 572130.3639441514 0.09032573012766093 0.031475990246635666 17.611489825946702 -1.2457960962182562 0.21391084986699094 SVLSGGPLPQGHEFELYEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVLSGGPLPQGHEFELYEVR 20 0 P35219 P35219 CA8 Carbonic anhydrase-related protein 0 ; 213.15 1.0277999999999999e-22 300430000.0 187907.0 192149.0 196525.0 187876.0 187126.0 202585.0 208900.0 195945.0 216781.0 211227.0 False True 186895.32959043054 198544.5633084765 224194.01177407775 211661.08233663996 210955.38691730198 188580.77578379473 198794.7089245035 210567.41088854926 163358.22726657658 197746.3120194672 0.9451267519569799 1.0040367442550873 1.1337456030634183 1.0703667753652109 1.0667980846921403 0.9536500269356721 1.005301726714039 1.064836095996672 0.8260999944742066 1.0 17.593291263037077 2.7454464184337457 24.462048724870485 0.9844281309326112 1.048242834621954 0.18913905296937294 0.0734100254120073 826.3465097300872 2935625.212394946 0.023268703191344827 0.024151266585893803 556.4759741786544 -2.7454464184337457 0.06381470368934272 SVMEELKR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVMEELKR 8 1 P61326;Q96A72;F5H6N1;F5H6P7;F5H3U9 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 0 ;; 117.04 0.0034575 3901500000.0 3294120.0 3318590.0 3374190.0 3256580.0 2806320.0 3404380.0 3640870.0 2769470.0 4319700.0 3348620.0 False True 3276384.823931135 3429047.262019979 3849246.62301476 3668862.694095328 3163688.217638186 3169043.22364852 3464747.2086259336 2976141.9144837107 3255167.816014458 3134908.204702185 1.045129429632658 1.0938270080369823 1.2278658166899776 1.1703253985530553 1.0091804962240467 1.0108886821295546 1.1052148842600906 0.9493553623100243 1.0383614458413457 1.0 21.579991768472752 3.2315305924350404 24.99544592332527 1.0173228033368384 1.1380811308143042 0.49247905253304647 0.05735366390009601 137.27416185975034 488081.6712224681 0.017204967519542744 0.020981591509993652 1704.2393645796762 -3.2315305924350404 0.12075832747746573 SVNDQPSGNLPFLKPDDIQYFDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVNDQPSGNLPFLKPDDIQYFDK 23 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 180.36 4.1726e-17 296170000.0 144550.0 134180.0 112760.0 126220.0 122340.0 164980.0 148140.0 130730.0 239010.0 158920.0 False True 143771.7588610147 138646.10018647698 128635.62787251007 142199.4390583718 137919.2738340088 153575.32092114657 140973.902250244 140485.73643348925 180109.18806991586 148777.5895417427 0.9663535973653915 0.9319017777712878 0.8646169646162915 0.955785340361861 0.9270164563011195 1.032247675165202 0.9475479652847231 0.9442667868608868 1.210593535119632 1.0 17.182797703221983 1.2657531205355552 24.82324496587163 1.1052967145892314 0.9455780702342781 0.5203901361507589 0.06108529755320806 123.18815196114109 112455.16509723029 0.038299442730161816 0.013978331920812895 18.439668979660716 -1.2657531205355552 -0.1597186443549533 SVNEILGLAESS(ph)PNEPK ddPTM_BT-474_Trastuzumab_2h_R1 7 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 SVNEILGLAES(0.031)S(0.969)PNEPK;SVNEILGLAES(0.083)S(0.917)PNEPK;SVNEILGLAES(0.002)S(0.998)PNEPK;SVNEILGLAES(0.307)S(0.693)PNEPK;SVNEILGLAES(0.205)S(0.795)PNEPK;SVNEILGLAESS(1)PNEPK;SVNEILGLAESS(1)PNEPK 309.67 4.6357e-58 833968000.0 1481492.0 1242570.0 1084532.0 1044118.0 1077214.0 1392755.0 1386969.0 1300337.0 1994235.0 1368981.0 True False 1473515.8116812354 1283928.1913005735 1237224.6786788658 1176303.2317441702 1214390.817752397 1296477.1250426203 1319876.0107338913 1397374.7499174927 1502782.505629928 1281611.4605363987 1.1497367627038215 1.0018076701367864 0.9653664287310949 0.917831392715423 0.9475499050579124 1.0115991975446286 1.0298565917797564 1.0903263531465637 1.1725726180701923 1.0 20.289527523232984 1.9160810746220867 2.3532274338959063 1.0986243671537246 0.9915896223669463 0.23667841328841044 0.06982688557110693 0.38156039033480077 3.859258950054423 0.04056139685850145 0.020544932131500587 82.42919804801095 -1.9160810746220867 -0.10703474478677832 SVNESLNNLFITEEDYQALR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVNESLNNLFITEEDYQALR 20 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 386.99 1.900799999999999e-130 385696000.0 410507.0 401011.0 352102.0 355938.0 368730.0 440302.0 450975.0 461797.0 569431.0 475603.0 False True 408296.8759236152 414358.40871873125 401674.90107455227 400999.7143048549 415685.57986606273 409864.9590994222 429159.6163582007 496258.63709765155 429102.3600344771 445249.6093557865 0.9170067021829919 0.9306204879511282 0.9021342021068122 0.9006177790589082 0.9336012230701364 0.9205285091489223 0.9638629823373327 1.1145627680969061 0.9637343885721265 1.0 18.764254820001288 1.9720278267937235 7.08916854582707 1.03931171011548 0.9191364087385053 0.6248521639252782 0.03729437956899546 0.10971321050224243 20.749593641580617 0.014948678244676156 0.009650682782804553 93.76220817863569 -1.9720278267937235 -0.12017530137697474 SVNVKPLVTHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVNVKPLVTHR 11 1 Q00796 Q00796 SORD Sorbitol dehydrogenase 0 ; 88.021 0.0079851 1583650000.0 1609430.0 1609200.0 1528450.0 1506620.0 1463380.0 1695860.0 1757550.0 1581780.0 2232330.0 1765880.0 False True 1600765.0077044815 1662761.2492180588 1743642.4744744394 1697357.9375227706 1649732.7688671898 1578629.1898250422 1672530.5920069974 1699820.4557160912 1682202.1831894687 1653180.0265540716 0.968294427704377 1.0057956317582415 1.0547202642587752 1.0267229885790385 0.9979147717541281 0.9549045865957956 1.0117050564016676 1.0282125530268098 1.0175553516067404 1.0 20.656812407853195 2.003189191388738 24.999651032817365 1.018782729264554 1.0032008925886036 0.046967205938174605 0.02690060188158327 306.92636334520563 2405930.6701461505 0.011035694017726565 0.008107954321706542 100.73704133191148 -2.003189191388738 -0.015581836675950367 SVPGALDKDS(ph)LEETEESIDALVSSQLSTNTHR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVPGALDKDSLEETEESIDALVSSQLSTNTHR 32 1 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 S(0.007)VPGALDKDS(0.992)LEET(0.002)EESIDALVSSQLSTNTHR;SVPGALDKDS(1)LEETEESIDALVSSQLSTNTHR;SVPGALDKDS(1)LEETEESIDALVSSQLSTNTHR;SVPGALDKDS(1)LEETEESIDALVSSQLSTNTHR;SVPGALDKDS(1)LEETEESIDALVSSQLSTNTHR 383.37 2.9650999999999977e-166 651190000.0 267668.0 228455.0 254040.0 218506.5 241109.0 304059.0 282882.0 266133.0 403502.0 290414.0 True False 266226.9052287107 236058.98657103622 289806.6238447362 246169.40049602403 271812.80198499333 283040.1170078967 269197.9169458187 285993.19585599133 304064.3387497892 271879.5298840656 0.9792090833106658 0.8682484726661697 1.0659376377777137 0.905435582447105 0.9997545681386872 1.0410497514417145 0.9901367604269787 1.0519114696790304 1.1183789337852974 1.0 18.052608007754355 2.70118329780465 0.8367046572944745 1.0560217412157475 0.949365152479195 0.3113226376789381 0.05840480044490756 0.7038693466171253 1.0491609729206826 0.036152482059892535 0.032831593286523596 502.5546523775237 -2.70118329780465 -0.1066565887365526 SVPGTTSSPLVGDIS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 SVPGTTSSPLVGDISPK 17 0 Q9UQR0;H0Y6S1;B4DRC2;Q9UQR0-2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK 290.92 5.8009e-46 652325000.0 605169.0 497257.0 472778.0 434228.0 436991.0 620361.0 587669.0 541734.0 866611.0 567143.0 True False 601910.8373445969 513807.8986467958 539341.0329399576 489201.2202775995 492639.21360141714 577476.9042427164 559241.2053564109 582160.9419495135 653046.3310424583 530947.448184449 1.1336542616464285 0.9677189341501478 1.0158086921487428 0.921374086927814 0.9278492914618478 1.0876347672775766 1.0532891857164228 1.096456803663313 1.2299641579887444 1.0 19.018209548280534 2.6327347090202275 7.06985755074487 1.0966588229339806 0.9892958816588828 0.29620949719993495 0.07708791442733333 0.32028848249226194 18.792092107358496 0.024887060657192372 0.023427827934963705 429.2741223902827 -2.6327347090202275 -0.10736294127509782 SVPHLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVPHLQK 7 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 117.17 0.005291399999999999 1370220000.0 2330100.0 3082700.0 3037800.0 2455500.0 2572300.0 3815300.0 2940000.0 3014300.0 4871400.0 3065700.0 False True 2317555.0004984452 3185305.8059684946 3465495.834969061 2766366.0482319114 2899867.1577833984 3551557.291250152 2797780.968109336 3239242.3723052554 3670908.743415708 2870044.4013221804 0.8074979604603982 1.1098454799169932 1.2074711573704457 0.9638756971695259 1.0103910435836738 1.2374572635928596 0.9748214929429128 1.1286384178631494 1.2790424920689671 1.0 21.452641625762354 4.739617109468634 24.474773482919062 1.1011074346050826 0.8074978332490611 0.40183059222383166 0.10753258958067215 65.78435200761214 1523684.18962926 0.0246500869141264 0.15080205022754153 54905.65912366744 -4.739617109468634 -0.29360960135602154 SVPIWER ddPTM_BT-474_Trastuzumab_2h_R1 2 SVPIWER 7 0 O00204;O00204-2 O00204 SULT2B1 Sulfotransferase family cytosolic 2B member 1 0 ; 110.81 0.015635 887000000.0 564020.0 620870.0 564520.0 592620.0 530830.0 623350.0 650850.0 492580.0 698580.0 614780.0 False True 560983.3789885131 641535.2826261596 643999.5091041977 667645.6312373029 598428.0540240888 580259.2817080658 619365.8990115516 529338.8208705586 526424.3194924139 575544.2140603615 0.974700753276409 1.1146585561172493 1.118940115062397 1.1600249206349975 1.039760350994211 1.0081923639096992 1.0761395630094792 0.9197187773571172 0.9146548720880789 1.0 19.134567236774235 1.7510966211837038 7.004541979261141 0.9390453273933164 1.073955623666206 0.5127248591828217 0.05585989978993801 0.11086955422492373 16.435055215462295 0.028135494060827826 0.015028670861481058 56.37630670347552 -1.7510966211837038 0.13491029627288964 SVPVTVDDDDDDNDPENR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVPVTVDDDDDDNDPENR 18 0 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;P46100-3;A0A096LP59 P46100;P46100-3;A0A096LP59 ATRX Transcriptional regulator ATRX 0 ; 287.96 8.3046e-40 1296500000.0 417920.0 372050.0 383670.0 402140.0 349830.0 427250.0 432320.0 428370.0 559360.0 458340.0 False True 415669.9651552766 384433.45934102545 437687.4010805777 453050.8827676573 394378.77689513913 397715.21313831833 411407.0299772209 460337.1446187847 421513.2230399901 429088.34879538434 0.9687281566190779 0.8959307807361298 1.020040283800141 1.0558452217114376 0.9191085658753301 0.9268842052105529 0.9587932907807876 1.0728260180243248 0.9823459998933541 1.0 18.710915201989366 1.7680006342264605 24.999999999918476 1.0254136130778806 0.9636076815572336 0.20136534949999207 0.04939570465501089 33.94395871464728 28840.811695348762 0.02379060530606292 0.013194997581919062 58.61390204876143 -1.7680006342264605 -0.06180593152064695 SVQNHNNK ddPTM_BT-474_Trastuzumab_2h_R1 5 SVQNHNNK 8 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;; 99.7 0.0066271 1786249000.0 1452500.0 1380290.0 1281860.0 1227520.0 1207410.0 1155160.0 1474200.0 1401650.0 1696070.0 1610570.0 False True 1444679.9013879222 1426232.118247075 1462334.7458731427 1382923.9061395384 1361166.5066202446 1075306.5081541482 1402887.31400911 1506248.2404344848 1278096.27467362 1507782.0437216503 0.9581490291673899 0.9459139828504085 0.9698581780849902 0.9171908578550748 0.9027607884628236 0.7131710532246259 0.9304311056433401 0.9989827420391746 0.8476664647888377 1.0 20.52399646532601 6.501085128645847 0.0009999633275586423 1.8284380050296405 9.983581009649283e-06 0.0033083719402170475 0.08089056729310398 25369844.11828984 2618.90493246088 2367963.4794157757 2420943.222518809 3170188.8097186834 -6.501085128645847 -1.8284280214486308 SVRPTDSNVS(ph)PAISIHEIGAVGATK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVRPTDSNVSPAISIHEIGAVGATK 25 1 A6NIT2;A6NMN0;P46020-3;P46020-2;P46020 A6NIT2 PHKA1 Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform 1 S(0.018)VRPT(0.014)DS(0.043)NVS(0.926)PAISIHEIGAVGATK;S(0.081)VRPT(0.057)DS(0.02)NVS(0.842)PAISIHEIGAVGATK 188.26 7.427100000000001e-18 547740000.0 431540.0 533820.0 622880.0 646310.0 640080.0 738370.0 717510.0 659710.0 683150.0 741540.0 True False 429216.6365886012 551587.8759989952 710576.0898299847 728132.7797323434 721590.3939486049 687328.2198360212 682801.3001456229 708940.910139503 514796.8362410069 694214.282335665 0.6182768743168371 0.7945498818364739 1.0235688142849364 1.048858829701055 1.0394346706910635 0.9900807824401483 0.9835598568331908 1.0212133748592591 0.7415532197191147 1.0 19.405021521024974 4.474006125646868 2.931045593789792 0.9882597956367993 0.6264762464812597 0.6526291826492524 0.08447623096635265 0.15702977911444452 2.523634061689477 0.020775329416099466 0.09937318174427298 29785.58441173 -4.474006125646868 -0.3617835491555397 SVS(ph)CDNVSK ddPTM_BT-474_Trastuzumab_2h_R1 6 SVSCDNVSK 9 0 Q96CB8;A0A087WXN4 Q96CB8 INTS12 Integrator complex subunit 12 1 SVS(1)CDNVSK;SVS(1)CDNVSK;SVS(1)CDNVSK;SVS(1)CDNVSK;S(0.001)VS(0.999)CDNVSK;S(0.001)VS(0.999)CDNVSK 216.91 6.1404e-07 4612870000.0 5412480.0 3634680.0 3134750.0 3945590.0 3400100.0 3932620.0 3556790.0 3740900.0 5781040.0 4413960.0 True False 5383339.809063055 3755658.1265895437 3576095.5522645544 4445101.289449547 3833082.5810283925 3660767.235791725 3384734.4794427254 4020064.9539053007 4356380.153967227 4132257.2938187234 1.3027600718657513 0.9088635725097468 0.8654097017661245 1.0757077726255804 0.9276001730971946 0.885900120805091 0.8191006122745098 0.9728496238408856 1.054237392353027 1.0 21.978498655318013 4.741538059682078 24.697502133769785 0.9395411618413675 1.3027602298244387 0.6546451320150063 0.07773272466877525 144.38202254924914 1197558.5541021812 0.01871297373706547 0.13154319414287396 55149.05304988271 -4.741538059682078 0.36321906798307124 SVS(ph)EESANSLVSVGVEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSEESANSLVSVGVEAK 18 0 Q8NEZ4;Q8NEZ4-3;H0YMU7;C9J4Z5 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 S(0.001)VS(0.999)EESANSLVSVGVEAK;SVS(1)EESANSLVSVGVEAK;S(0.001)VS(0.998)EESANSLVSVGVEAK;S(0.003)VS(0.996)EESANSLVSVGVEAK 403.49 4.154799999999998e-147 775950000.0 1140470.0 1134380.0 1034090.0 972580.0 994400.0 1323460.0 1309440.0 1216540.0 1543210.0 1260430.0 True False 1134329.8362381288 1172137.15255281 1179680.8835285911 1095708.5282791269 1121030.9457294312 1231972.3252897332 1246097.3846534344 1307324.3922649508 1162906.5734545612 1179988.2782915859 0.961306020666949 0.993346437517038 0.9997394933757818 0.9285757735369362 0.9500356625173307 1.044054714741244 1.0560252229433693 1.1079130329648064 0.9855238351505017 1.0 20.170341097610788 2.6895474621619515 6.472639900636626 1.052364576147277 0.9678491841192277 0.46421718867399275 0.037325907707386675 0.1780361934809502 18.42795203623905 0.01244049501273152 0.011800095167563451 489.26873227231715 -2.6895474621619515 -0.08451539202804936 SVS(ph)ENSLVAMDFSGQTGR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVSENSLVAMDFSGQTGR 18 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 S(0.164)VS(0.807)ENS(0.029)LVAMDFSGQTGR;S(0.021)VS(0.979)ENSLVAMDFSGQTGR;SVS(1)ENSLVAMDFSGQTGR;S(0.001)VS(0.999)ENSLVAMDFSGQTGR;S(0.188)VS(0.806)ENS(0.006)LVAMDFSGQTGR 216.65 9.2825e-19 1424680000.0 1409163.0 1473913.0 1523343.0 1509885.0 1550847.0 1665984.0 1640823.0 1499752.0 1861140.0 1762482.0 True False 1401576.2229807267 1522971.303205778 1737816.453265279 1701036.2861880043 1748338.1728596634 1550818.4473845009 1561450.1229374404 1611671.1098263455 1402486.9849982988 1649998.889823245 0.8494407066727601 0.9230135320690581 1.0532228015325766 1.0309317761845445 1.059599605577282 0.9398906005025441 0.9463340445669692 0.9767710267968693 0.8499926840244961 1.0 20.65403362310009 -0.1505022748087389 7.637400671626236 0.9999999888184927 0.9654354812481245 0.02187488426155282 0.07112707636130694 0.0 0.0 0.07025663616545749 0.016559647951983683 0.7071274967797111 0.1505022748087389 -0.03456450757036822 SVS(ph)HGSNHTQKPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 7 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.073)VS(0.924)HGS(0.004)NHTQKPDEQR;S(0.039)VS(0.961)HGSNHTQKPDEQR;S(0.358)VS(0.632)HGS(0.005)NHT(0.005)QKPDEQR;S(0.413)VS(0.587)HGSNHTQKPDEQR;S(0.409)VS(0.587)HGS(0.004)NHTQKPDEQR;S(0.3)VS(0.7)HGSNHTQKPDEQR;S(0.336)VS(0.664)HGSNHTQKPDEQR 240.21 4.4974e-20 3711355000.0 1131980.0 1592226.0 1956762.0 2194123.0 2107983.0 2262219.0 2051924.0 904685.0 2000609.0 2041131.0 True False 1125885.5454548015 1645222.279889057 2232257.081119796 2471898.7468315023 2376422.140055872 2105837.1252207225 1952664.5970091105 972197.1885973475 1507585.7187371505 1910864.2720798352 0.5892022588445583 0.86098332776841 1.1681923796137275 1.2936024724252249 1.2436373293375313 1.1020338576578617 1.021875088429896 0.5087735444125407 0.7889548937435804 1.0 20.865793877230615 1.8753606921213193 7.806656081090316 0.7196469306146326 1.0606159487892706 0.23349792549538495 0.22162323297202333 0.3415380069125651 20.187801033638213 0.1004798394435418 0.06266415091833934 75.05172733961271 -1.8753606921213193 0.340969018174638 SVS(ph)KESVASMGADSGDDFASDGSSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSKESVASMGADSGDDFASDGSSSR 26 1 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 1 S(0.012)VS(0.926)KES(0.062)VASMGADSGDDFASDGSSSR 282.82 3.5763999999999996e-61 425520000.0 216600.0 198240.0 181810.0 186820.0 176520.0 230120.0 224660.0 174670.0 268140.0 229230.0 True False 215433.84966652232 204838.2985613894 207407.26767915065 210471.39284491385 198998.77568398934 214212.3460442128 213792.33751545727 187704.76235628795 202060.48989191794 214600.34514632347 1.0038839849937358 0.9545105736979226 0.966481519578786 0.9807598058679993 0.9272994204566805 0.9981919921804129 0.9962348260422635 0.874671297608133 0.9415664721049012 1.0 17.711292870850393 1.7625523373961554 24.999999999964057 0.9258858368428706 0.9734358112024608 0.14968841825879764 0.03606967215868453 17.483733287550514 18231.674304900294 0.015824120576862433 0.008775583384344325 57.88317399163111 -1.7625523373961554 0.047549974359590186 SVS(ph)PESNDSISEELNHFKPIVCSPCTPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSPESNDSISEELNHFKPIVCSPCTPPK 29 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 S(0.147)VS(0.851)PESNDSISEELNHFKPIVCSPCTPPK;S(0.132)VS(0.868)PESNDSISEELNHFKPIVCSPCTPPK;S(0.002)VS(0.998)PESNDSISEELNHFKPIVCSPCTPPK;SVS(0.999)PES(0.001)NDSISEELNHFKPIVCSPCTPPK 346.55 4.750999999999999e-120 1576312000.0 690823.0 646869.0 667382.0 633873.0 670902.0 792799.0 766694.0 783688.0 1014768.0 779419.0 True False 687103.6857256499 668399.6436244318 761343.584611666 714121.2568075372 756337.3929522997 737994.6711781059 729606.0821644966 842170.7780470294 764692.0235945468 729675.8121258212 0.9416561085173666 0.9160227494414693 1.0433997837938256 0.9786829232108328 1.0365389401476846 1.0114007603295068 0.9999044370662069 1.1541711593720885 1.0479887244264137 1.0 19.47689610538668 4.135062911905129 0.5032216253257226 1.068055128241523 0.8798995184100937 0.3747477250615249 0.04915700650428493 2.407446371658916 0.7227045975131151 0.034274945383112924 0.25135030286547755 13647.808244406391 -4.135062911905129 -0.1881556098314292 SVS(ph)PLVWCR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSPLVWCR 9 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 S(0.005)VS(0.995)PLVWCR 70.441 0.054966 51059000.0 60783.0 63490.0 56785.0 59008.0 58906.0 73461.0 70683.0 64416.0 91929.0 75041.0 True False 60455.75108162618 65603.22626948457 64779.8344159319 66478.40674977357 66407.3299367838 68382.81397859336 67263.7932547185 69223.04901782019 69274.3297354893 70251.81913416773 0.8605578022992841 0.933829573070482 0.9221089960989427 0.9462873356035427 0.9452755922228622 0.9733956333286555 0.9574669251803621 0.9853559647418839 0.986085920468314 1.0 16.100247963201344 7.999999999999886 0.24779874055278164 0.9972598209085983 0.23560122535561873 0.8895523478313456 0.01275064850502815 14.328190442372405 0.19454150093974246 0.015471387833679778 4.5373808399470175 99999999.99997382 -7.999999999999886 -0.7616585955529795 SVS(ph)PPPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 S(0.482)VS(0.518)PPPKR;S(0.141)VS(0.859)PPPKR 93.667 0.0066803 1540170000.0 1171340.0 1340570.0 1180390.0 1117020.0 1249600.0 1393340.0 1368700.0 1252900.0 1738340.0 1259390.0 True False 1165033.6355881076 1385190.0620583233 1346578.6518661948 1258434.617469358 1408729.1530405234 1297021.6853695612 1302490.752058249 1346397.7600972878 1309949.3995626038 1179014.651981976 0.9881417789249983 1.1748709481512865 1.1421220674421104 1.0673613049285464 1.1948360019719746 1.1000895393362669 1.1047282150978395 1.1419686412157246 1.1110543854230484 1.0 20.169150216573478 0.9430827333095554 20.15966411497681 0.999999999363717 1.1189618715887302 0.2754040895541555 0.055030620250333076 1944.7870163042505 688831.9448623213 0.04826955682764654 0.012067389213749153 8.771679061400315 -0.9430827333095554 0.1189618722250132 SVS(ph)PSPSVLSEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVSPSPSVLSEGR 13 0 C9IYE1;A0A087X1P3;Q86UW7-3;Q86UW7-2;Q86UW7 C9IYE1 CADPS2 Calcium-dependent secretion activator 2 1 SVS(0.968)PS(0.032)PSVLSEGR;SVS(1)PSPSVLSEGR;SVS(1)PSPSVLSEGR;SVS(1)PSPSVLSEGR;S(0.001)VS(0.985)PS(0.014)PSVLSEGR 245.72 4.1804e-17 2080500000.0 1003015.0 1353540.0 1142512.0 1144580.0 1182664.0 1106250.0 1143274.0 1018404.0 1096060.0 1100900.0 True False 997614.8786854424 1398591.7606677918 1303367.7587076721 1289483.71064357 1333269.250201279 1029777.541332393 1087969.468889196 1094402.4778307274 825950.6994515379 1030639.6194720896 0.9679570432159759 1.3570133868753982 1.2646202747137534 1.2511489819342134 1.293632832477565 0.9991635503590108 1.0556255051076648 1.0618672687852793 0.8013962240987819 1.0 19.975108527549967 2.730128910653768 24.555322538947372 0.9995702093789579 1.2375500120234109 0.5155052787114105 0.11717989817471398 402.52639755152626 1172259.0324779039 0.03653239290889058 0.034980013644415754 537.1912259702779 -2.730128910653768 0.23797980264445295 SVS(ph)PSPVPLLFQPDQNAPPIR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 S(0.128)VS(0.847)PS(0.025)PVPLLFQPDQNAPPIR;S(0.013)VS(0.843)PS(0.145)PVPLLFQPDQNAPPIR;S(0.014)VS(0.986)PSPVPLLFQPDQNAPPIR;S(0.037)VS(0.963)PSPVPLLFQPDQNAPPIR;S(0.003)VS(0.947)PS(0.05)PVPLLFQPDQNAPPIR 337.45 2.4620999999999997e-80 1455483000.0 120465.8 138801.9 124610.9 130217.8 128247.2 166637.3 153799.5 126306.9 191471.1 149224.8 True False 119817.22551780863 143421.8373339795 142155.03158264075 146703.3601284683 144578.72073929122 155118.05567301082 146359.63061385445 135732.5622514425 144285.61298629217 139701.145506221 0.8576681678853743 1.0266332234734097 1.017565253796079 1.0501228146474684 1.034914353890198 1.1103563618675074 1.047662351539823 0.9715923356218882 1.0328162483096248 1.0 17.091984324886184 4.74016580872449 5.2917432196218845 1.0324506376272402 0.8502713585810903 0.7034504415285252 0.03405664410509681 0.09395458866741081 9.315928368134587 0.008909349182796436 0.06228096708547932 54975.07224083209 -4.74016580872449 -0.18217927904614994 SVS(ph)PTFLNPSDENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSPTFLNPSDENLK 15 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 S(0.135)VS(0.863)PT(0.001)FLNPSDENLK;S(0.026)VS(0.973)PT(0.001)FLNPSDENLK 193.77 8.3175e-08 2036680000.0 1772670.0 1666850.0 1437950.0 1351410.0 1463340.0 1946020.0 1870200.0 1639120.0 2353300.0 1962260.0 True False 1763126.1416821505 1722330.0946178962 1640400.8611145408 1522498.3674368127 1649687.6751042875 1811496.2178383397 1779731.2811422043 1761439.45768271 1773360.7476044216 1837026.8868246935 0.9597715495224566 0.9375639011985006 0.8929650800865406 0.8287839325359335 0.8980204301504686 0.9861021800119194 0.9688106874790903 0.9588533898528634 0.9653428375616652 1.0 20.808941311290468 2.744565922452869 24.689930792766816 0.9715376002208476 0.9005904181199685 0.5340349825396968 0.0336441718079121 370.0177625657827 1521275.921297732 0.0113948636187169 0.01179943193901558 555.3489082753272 -2.744565922452869 -0.07094718210087902 SVS(ph)PYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSPYSR 7 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 S(0.005)VS(0.995)PYSR;S(0.008)VS(0.992)PYSR 107.69 0.0077833 798580000.0 425310.0 811220.0 720510.0 614860.0 792670.0 679510.0 727780.0 618700.0 678660.0 639180.0 True False 423020.17821638304 838220.9673071546 821951.5452148117 692701.212956984 893611.8259768172 632537.0730944849 692574.5010104139 664870.5356949421 511413.33657808916 598386.9851704699 0.7069341223988554 1.4008007996169238 1.373612002909208 1.1576141027860851 1.4933677505072123 1.0570702384415769 1.157402346932916 1.1111046065039871 0.8546531747049889 1.0 19.190719271597168 1.5729591940368366 1.54600806478162 0.9317159613152515 1.223630503694612 0.18407559329208434 0.21060113781036505 0.5620690620441773 2.6318467612091037 0.17139862099425873 0.05948501528570969 37.40754387908724 -1.5729591940368366 0.29191454237936054 SVS(ph)SDSLGPPRPAPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVSSDSLGPPRPAPAR 16 1 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 S(0.002)VS(0.988)S(0.01)DSLGPPRPAPAR;S(0.006)VS(0.965)S(0.029)DSLGPPRPAPAR;S(0.001)VS(0.865)S(0.134)DSLGPPRPAPAR 176.42 1.923e-09 5306090000.0 2067960.0 1963290.0 1733840.0 1884940.0 1773680.0 2039630.0 1821400.0 1720280.0 2475810.0 1960670.0 True False 2056826.3331319566 2028636.9208161335 1977949.6011925566 2123573.21073275 1999547.6345749963 1898635.178872577 1733291.9235763105 1848656.0290048376 1865679.7996543155 1835538.3619859605 1.120557530002573 1.1051999581317657 1.0775855422888108 1.1569211816609217 1.0893521355835822 1.034375101165605 0.9442962127476189 1.0071464957042273 1.0164210339007806 1.0 20.807771835801166 2.665588252605857 2.913216771415228 0.9923537272747012 1.11210169162021 0.8167285634688424 0.026521469135154154 0.10605765737258369 1.7693284128152813 0.009019882205233025 0.008602844622277776 463.00774162106086 -2.665588252605857 0.11974796434550883 SVS(ph)SSPWLPQDGFDPSDYAEPMDAVVKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSSSPWLPQDGFDPSDYAEPMDAVVKPR 29 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 S(0.393)VS(0.506)S(0.046)S(0.054)PWLPQDGFDPSDYAEPMDAVVKPR 103.96 0.00033377 45118000.0 45244.0 37628.0 34749.0 31196.0 27068.0 33041.0 32037.0 32316.0 52127.0 38990.0 True False 45000.41133108097 38880.42523339366 39641.35715627752 35145.41040140204 30514.94935539443 30756.953440147874 30487.247916775126 34727.58401732301 39280.99931601398 36501.624818981596 1.2328331013823755 1.065169713025351 1.0860162349721811 0.9628450945867403 0.835988795203605 0.8426187489646659 0.8352298854631022 0.9513983059533271 1.0761438569054342 1.0 15.155673064531522 4.112338958708725 1.304671125238888 0.9139560970344156 1.203739124320832 0.5821984312673736 0.07994348477030991 0.4101197019916429 1.1770358815286797 0.025149998364944692 0.11843823351713663 12952.063313466806 -4.112338958708725 0.28978302728641636 SVS(ph)TTNIAGHFNDESPLGLR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GZ14;V9GYF5;V9GYG5 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(0.045)VS(0.901)T(0.045)T(0.009)NIAGHFNDESPLGLR;S(0.006)VS(0.945)T(0.047)T(0.002)NIAGHFNDESPLGLR;S(0.001)VS(0.952)T(0.039)T(0.008)NIAGHFNDESPLGLR 283.08 4.6097e-45 545400000.0 467640.0 253796.0 272820.0 351288.0 235393.0 254951.0 261521.0 284238.0 487320.0 364900.0 True False 465122.27819968795 262243.4464370781 311230.6846060495 395761.0247816297 265368.90326637967 237326.83746009925 248870.23012276262 305449.2828913186 367226.5157534469 341611.7695933925 1.361552263709489 0.7676651385554325 0.9110654617564715 1.1585110936098277 0.776814287113814 0.6947267588074625 0.7285177276502603 0.8941415667700304 1.0749820364519134 1.0 18.38199815560573 4.746798149038256 24.793147457647112 0.8790741268870539 1.3615525322150162 0.4849344844835075 0.14555367002141004 825.1329027067916 2483403.5566303683 0.035969724914975375 0.40694021762593074 55821.06898204155 -4.746798149038256 0.48247840532796227 SVS(ph)VDESRPELIFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSVDESRPELIFR 14 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 S(0.003)VS(0.997)VDESRPELIFR;S(0.001)VS(0.999)VDESRPELIFR 193.9 1.2463e-07 470890000.0 637210.0 659910.0 666030.0 699030.0 698760.0 661780.0 581580.0 519530.0 739160.0 629690.0 True False 633779.332160686 681874.7054259817 759801.2347634601 787527.12632684 787742.9441249961 616032.7062625543 553446.753548649 558299.966719885 557003.9222365551 589502.6450952678 1.0751085468976358 1.1566949039147838 1.2888852002363296 1.335917884133616 1.3362839856260378 1.045004142709146 0.9388367603663731 0.947069485378916 0.9448709465019268 1.0 19.169138761021433 2.550509885590537 4.4070831415455425 0.9550986114168148 1.2411819448278694 0.7549152977937288 0.07621005980136951 0.11699400583940493 4.284151522828108 0.02844265149635908 0.02617890093799367 355.23020428705706 -2.550509885590537 0.2860833334110545 SVS(ph)VDSGEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSVDSGEQR 10 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 SVS(1)VDSGEQR;SVS(1)VDSGEQR 240.8 2.858e-12 949710000.0 985490.0 1119730.0 1112900.0 1155590.0 900400.0 1087240.0 986200.0 950950.0 1102990.0 1108890.0 True False 980184.2313382317 1156999.5361589221 1269586.646499791 1301887.575514687 1015060.6029110814 1012081.6578876667 938493.7383501455 1021914.7178262573 831172.8938087805 1038119.6908315086 0.9441919269955548 1.1145145847606395 1.2229675033741851 1.2540823442737192 0.9777876403616259 0.9749180820151999 0.904032306331108 0.9843900726010972 0.800652276562668 1.0 19.98554135927641 3.0887000058958183 6.764421489400767 0.9379378191622156 1.1383394920602472 0.5142425264905597 0.0928986685382166 0.17989342494058938 11.465125808634033 0.027622220310687878 0.03311230140692537 1226.591655608966 -3.0887000058958183 0.20040167289803157 SVSDNDIR ddPTM_BT-474_Trastuzumab_2h_R1 6 SVSDNDIR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 161.86 0.00080275 9713270000.0 12782650.0 15988500.0 14463940.0 15277560.0 15132900.0 14818230.0 15041110.0 13572200.0 16322480.0 15289860.0 False True 12713829.63268591 16520667.557247652 16500337.029179798 17211697.52955647 17059985.11527442 13793880.63846138 14313514.046679957 14585026.482235143 12300023.514026359 14314048.044492275 0.8882064384000659 1.154157615364749 1.1527372954102078 1.202433963897386 1.1918351162610998 0.9636603562867707 0.9999626941441961 1.0189309437065313 0.8592973473188203 1.0 23.770928391331374 2.725714696405157 24.767458940009867 0.9762680694818276 1.126524453238194 0.3935227849487667 0.0922278635378329 722.8344507566659 1393651.9735110416 0.02996990412803588 0.02843394769593856 531.7588130938502 -2.725714696405157 0.1502563837563663 SVSDQFYR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSDQFYR 8 0 P55010;H0YLZ1;H0YN40;H0YMJ8;H0YM54;H0YK11;H0YK29 P55010 EIF5 Eukaryotic translation initiation factor 5 0 ;;; 137.9 0.0027343000000000003 325980000.0 465282.0 554764.0 452178.0 480430.0 386435.0 463762.0 511843.0 366884.0 598320.0 493586.0 False True 462776.97340969 573228.9843780805 515840.73199836677 541252.3887404023 435645.20667030645 431703.2245183217 487083.19865985954 394262.74707920343 450872.0530772444 462084.91889976454 1.001497678200737 1.240527359652751 1.1163331909351124 1.171326668762827 0.9427817027822252 0.9342508419149831 1.0540988868877532 0.8532257404503758 0.975734187886464 1.0 18.817798479363102 3.2341268592960075 24.98495529382783 0.9513062316939388 1.1389939577188146 0.5656745322882102 0.07368219779784331 70.85745414186202 399293.310574532 0.020071239653317606 0.024774521399556743 1714.4580349776884 -3.2341268592960075 0.18768772602487582 SVSDYDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSDYDGK 8 0 P07237;H7BZ94;I3L398;I3L312;I3L4M2 P07237 P4HB Protein disulfide-isomerase 0 ;;; 150.05 0.0011524 1883590000.0 3402340.0 3346340.0 2987260.0 2809570.0 2766580.0 3370640.0 3582910.0 3549650.0 4373370.0 3364350.0 False True 3384022.179475508 3457720.9039947526 3407840.242270616 3165261.2739282977 3118887.564195619 3137635.590433098 3409590.9552546367 3814542.907757477 3295611.563655617 3149634.302635054 1.0744174892445004 1.0978166262356066 1.0819796569460591 1.0049615192723071 0.9902379973402907 0.9961904427469824 1.082535503376407 1.2111066051592547 1.0463473682955622 1.0 21.5867528993963 2.002316777222317 24.923533519543284 1.118660973151848 1.0412721977203556 0.03474206254593459 0.06305884431724627 102.57588680123405 1103483.286908988 0.02435097008645523 0.01787148818427793 100.53488308855754 -2.002316777222317 -0.07738877543149236 SVSEINS(ph)DDELSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSEINSDDELSGK 14 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;S(0.002)VS(0.004)EINS(0.984)DDELS(0.01)GK 339.85 7.896399999999995e-69 2697660000.0 4511342.0 3950832.0 3582647.0 3380257.0 3363000.0 4615724.0 4480711.0 3931239.0 5590071.0 4049597.0 True False 4487053.435929217 4082333.054791622 4087052.55667404 3808197.189614439 3791258.1159373242 4296649.864125571 4263961.890951754 4224608.016607153 4212472.905163732 3791148.2524255756 1.1835605302584518 1.076806493172549 1.0780513671706573 1.0044970378507239 1.0000289789542465 1.133337336881135 1.1247151541023679 1.114334691054155 1.1111337844592581 1.0 21.854203443362984 2.668250827250535 24.999629980916318 1.1068595524303904 1.0660076712223852 0.03947117239808973 0.05893227303504142 395.9886320815091 140797.74315020596 0.019244463583712137 0.01814386154865695 465.8550709444548 -2.668250827250535 -0.0408518812080052 SVSGS(ph)PEPAAK ddPTM_BT-474_Trastuzumab_2h_R1 6 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 SVS(0.001)GS(0.999)PEPAAK;SVSGS(1)PEPAAK;SVSGS(1)PEPAAK;SVSGS(1)PEPAAK;SVSGS(1)PEPAAK;SVSGS(1)PEPAAK 218.4 1.1164000000000002e-11 4358060000.0 4826960.0 5493140.0 5113260.0 4448950.0 4898360.0 5436470.0 6258530.0 5434340.0 6405330.0 5462810.0 True False 4800972.183685678 5675975.844226744 5833162.562747339 5012186.613838885 5522137.111145631 5060659.624973839 5955780.9939936595 5839878.045819377 4826822.248524642 5114168.788853059 0.938759040208053 1.1098530530705617 1.1405885889924894 0.9800588953504124 1.079772166140036 0.9895370751165177 1.164564808063237 1.1419017022958038 0.9438136377206159 1.0 22.28606834562974 2.262205750395201 24.996104583167725 1.0848484861328607 1.046635452417593 0.0 0.0836370476547335 847.1503023517198 895549.9540626236 0.028895731872806717 0.024162803781694702 182.89664980539828 -2.262205750395201 -0.03821303371526774 SVSHGSNHTQKPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 95.067 0.0025022 41547000.0 54633.0 58961.0 50252.0 57021.0 65519.0 60623.0 58006.0 51255.0 85591.0 74853.0 False True 54338.861998296925 60923.48124232282 57327.04480178584 64239.85275350516 73862.45628846194 56432.27470119199 55200.02817556136 55079.908367616365 64498.24491064039 70075.8174551225 0.7754295842941293 0.869393800241275 0.8180717240794068 0.9167192775831011 1.0540363133939101 0.8053031238248771 0.7877186478903683 0.7860045072309044 0.920406600350341 1.0 16.09662904836944 5.248361973544907 1.4348216527463824 0.8734345414521123 0.5542105489795579 0.1134766622379687 0.08682485860039231 12.38772878289148 8.408821759023953 0.024750097053772995 8.138478745215961 177158.4914685037 -5.248361973544907 -0.3192239924725544 SVSMLSLNT(ph)PNSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSMLSLNTPNSNR 14 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 SVSMLSLNT(1)PNSNR 133.25 0.0005105999999999999 161690000.0 186630.0 179600.0 154110.0 172840.0 154430.0 211760.0 200780.0 174660.0 290860.0 238490.0 True False 185625.20481654225 185577.87742950732 175807.3484518669 194721.5262783156 174095.74512167735 197121.52962942154 191067.50434591607 187694.01610550898 219181.45032432015 223269.36401843835 0.8313957700045792 0.8311837956155134 0.787422623899928 0.8721372371636031 0.7797565325948611 0.8828865997627089 0.8557712572251384 0.8406617581891287 0.9816906644935818 1.0 17.768425779287835 1.2203858396318248 4.1953830880424015 0.9997858848703394 0.8346214292392474 0.8041320076445159 0.030799460142594583 0.07918469248259466 2.8882772651457373 0.02611631162280708 0.007345874664690873 16.610619870390504 -1.2203858396318248 -0.16516445563109194 SVSSDS(ph)LGPPRPAPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVSSDSLGPPRPAPAR 16 1 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 SVS(0.057)S(0.427)DS(0.516)LGPPRPAPAR;SVS(0.218)S(0.218)DS(0.563)LGPPRPAPAR;SVS(0.001)S(0.008)DS(0.991)LGPPRPAPAR 196.52 1.2017e-10 968550000.0 833190.0 827360.0 700890.0 809650.0 779820.0 887690.0 733460.0 691670.0 1008980.0 882710.0 True False 828704.1976161121 854898.1774503182 799569.2197549088 912151.6069847163 879125.4546447344 826326.0796974925 697979.737710706 743285.927629094 760330.39863932 826374.6920739478 1.0028189458904144 1.034516407206016 0.967562568679632 1.1037990583853612 1.0638339521729523 0.9999411739288225 0.8446286465513486 0.8994538854568181 0.9200794820217972 1.0 19.656436546429603 2.4018473359243178 6.097826670693719 0.9051384406110234 1.034421396915196 0.5619771578267346 0.04911351794243048 0.1358341282062885 8.484887923609374 0.016930647418919337 0.01412531057097358 252.25938693017653 -2.4018473359243178 0.12928295630417264 SVSSDS(ph)LGPPRPAPARTPTQPPPEPGDLPTIEEALQIIHSAEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVSSDSLGPPRPAPARTPTQPPPEPGDLPTIEEALQIIHSAEPR 44 2 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 S(0.036)VS(0.036)S(0.036)DS(0.722)LGPPRPAPART(0.165)PT(0.006)QPPPEPGDLPTIEEALQIIHSAEPR;S(0.02)VS(0.02)S(0.02)DS(0.535)LGPPRPAPART(0.402)PT(0.004)QPPPEPGDLPTIEEALQIIHSAEPR 125.04 2.1301e-09 163352000.0 34531.0 50517.0 50515.0 50949.0 46629.0 55772.0 52652.0 43563.0 61951.0 61217.0 True False 34345.088932754785 52198.427806828615 57627.07291574887 57399.13817608136 52566.926758263864 51916.61291316629 50105.02160982755 46813.89226843179 46684.006150869645 57310.078649489515 0.5992853219206097 0.9108071221830991 1.0055312132478147 1.0015539941436225 0.9172370374810522 0.9058897516210045 0.8742794075763122 0.8168526962726264 0.814586321480916 1.0 15.806501255687143 7.997008579398047 0.010022687759329279 1.66750916325992 5.272634083150635e-07 0.0721893669797975 0.11184564010430524 64810.655884497086 50.22966208049275 3598.6316329732576 4843.908299041784 99313566.74177219 -7.997008579398047 -1.6675086359965117 SVSSSPWLPQDGFDPS(ph)DYAEPMDAVVKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVSSSPWLPQDGFDPSDYAEPMDAVVKPR 29 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 SVSSSPWLPQDGFDPS(0.574)DY(0.426)AEPMDAVVKPR 99.537 0.000495 37723000.0 35426.0 25806.0 31570.0 22286.0 18843.0 31792.0 29794.0 21000.0 36818.0 38014.0 True False 35235.27035219862 26664.937109943574 36014.78158864084 25107.40531496494 21242.544358788866 29594.29387031813 28352.750395867228 22567.126635839293 27744.697235923857 35587.913974577226 0.9900909161849013 0.749269460665553 1.0119947354702654 0.7055037092902046 0.5969033299890464 0.8315827078670379 0.7966960473188018 0.6341233333305365 0.7796101017818495 1.0 15.119099749690392 3.7202729189355424 24.901037017852733 0.7400806153537551 0.9003334894834917 0.22236259906337064 0.12528600637140333 974.9970287609109 1327583.3389332632 0.03145974880302487 0.04883825101506718 5251.373629149301 -3.7202729189355424 0.16025287412973654 SVSTTNIAGHFNDES(ph)PLGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GZ14;V9GYF5;V9GYG5 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 SVSTTNIAGHFNDES(1)PLGLR;SVSTTNIAGHFNDES(1)PLGLR;SVSTTNIAGHFNDES(1)PLGLR;SVSTTNIAGHFNDES(1)PLGLR 287.82 9.3604e-46 1602180000.0 795100.0 993300.0 889060.0 903850.0 964740.0 1071020.0 1025470.0 931500.0 1173600.0 1066210.0 True False 790819.2699439139 1026361.3900374696 1014231.9201519481 1018277.3173261705 1087593.9205380245 996982.9083098936 975864.0984241778 1001013.260061158 884382.0054343052 998163.5649716937 0.7922742300920794 1.0282497038113945 1.0160979179606802 1.0201507579121536 1.0895948907620836 0.998817171149867 0.9776595065878324 1.0028549379976068 0.8860091035875316 1.0 19.92891671789353 4.7424654309799585 24.872102770278655 1.00460556985871 0.792274141954581 0.6324950844256718 0.04796347869121399 233.61054061111113 1487942.2007950635 0.0115019487712649 0.08769819895058376 55266.94147525762 -4.7424654309799585 -0.21233142790412896 SVT(ph)PPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVTPPPPPR 9 0 O95835;O95835-2;H0YG09 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 SVT(1)PPPPPR;SVT(1)PPPPPR 122.57 0.0065069 792490000.0 764550.0 832780.0 705260.0 752750.0 773420.0 855560.0 797190.0 723430.0 811480.0 781480.0 True False 760433.7477494914 860498.5788738601 804554.4777701874 848048.0728188033 871910.452580506 796417.150971608 758626.8741384642 777416.0201031066 611501.627274907 731605.2773413105 1.0394044046715258 1.1761787476451155 1.0997111457341833 1.1591606827942134 1.1917771503085262 1.0885885813533591 1.0369346663208219 1.0626167472824617 0.8358354514570123 1.0 19.480705956257555 1.6799847244535915 1.4384215072052813 0.9313820332595922 1.13017583531454 0.5803764398129815 0.06382850620754342 0.2606794692465044 1.0444662033097885 0.049778266164906416 0.018585802378538123 47.861325764498936 -1.6799847244535915 0.19879380205494768 SVTDSIRDEYAFLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVTDSIRDEYAFLQK 15 1 O00429-3;O00429-5;O00429-2;O00429;O00429-8;O00429-6;O00429-7;F8VZ52;O00429-4;O00429-9 O00429-3;O00429-4 DNM1L Dynamin-1-like protein 0 ; 228.73 5.0796e-13 319010000.0 379190.0 425330.0 357630.0 344050.0 369970.0 431080.0 413600.0 365370.0 501980.0 473640.0 False True 377148.48317197 439486.8519325852 407981.1954243153 387606.6947237583 417083.4865160065 401280.4542531688 393592.58789456554 392635.76471126726 378273.7551873833 443411.8896963953 0.8505601494587889 0.9911480998705343 0.920095299437416 0.8741459210513122 0.9406231456751963 0.9049835233961048 0.8876455436593251 0.8854876782399892 0.8530979073348436 1.0 18.758287929748146 2.4833231268668814 22.73350260402713 0.8955540162950771 0.9180356910793321 0.0 0.050214021795748624 316.8908673791469 1161614.0313887072 0.01605101031290646 0.013898728695803575 304.31483684539046 -2.4833231268668814 0.022481674784255 SVTEQGAELSNEER ddPTM_BT-474_Trastuzumab_2h_R1 7 SVTEQGAELSNEER 14 0 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;;;;; 457.9 1.0284999999999993e-197 16608800000.0 3411377.0 3780357.0 3516662.0 3801649.0 3640402.0 4020972.0 4016332.0 3434525.0 4068242.0 3915344.0 False True 3393010.525271612 3906183.8974709376 4011777.4422259377 4282937.373608143 4103985.616346852 3743011.6699899635 3822046.677281811 3690826.695664574 3065678.270749891 3665463.393825352 0.925670279776167 1.0656725979179305 1.094480291082423 1.1684572763222667 1.1196362302404141 1.0211564726837117 1.0427185505986039 1.0069195348893532 0.8363685409910715 1.0 21.80556416705934 1.5230718769414484 3.153291101288043 0.9175153345695719 1.0685548237127567 0.38290648538816263 0.07141624098651395 0.21488886861817386 4.583750402366313 0.0510065679311421 0.01913190295016469 33.34816003261632 -1.5230718769414484 0.15103948914318477 SVTLGYLFSQGHLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVTLGYLFSQGHLTR 15 0 A0A3B3IRQ9;P55265-3;P55265-2;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 228.73 5.5697e-13 634220000.0 400710.0 554280.0 525780.0 604730.0 539570.0 600420.0 522910.0 507490.0 576090.0 549310.0 False True 398552.6218830663 572728.8747306642 599805.2538383142 681288.7559956362 608281.0412180496 558914.3786366517 497614.84558981407 545361.4807820048 434120.33871050505 514252.5655120482 0.7750133856623974 1.1137112639591604 1.1663631726194308 1.324813528771155 1.1828449326497301 1.0868480122799837 0.9676467925723079 1.060493456632503 0.8441772930743585 1.0 18.97211756054682 2.3501740804511644 4.107930199225745 0.9821406007965708 1.1280625258811825 0.18985478481218976 0.1392807051082628 0.3921126528552691 12.049155347078264 0.052491943826893504 0.042905477779783006 223.96186763422398 -2.3501740804511644 0.14592192508461166 SVTLLEVCGS(ph)WPEGFGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVTLLEVCGSWPEGFGLR 18 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;K7EIE2;Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 K7ESE9;Q9H6U6-7 BCAS3 Breast carcinoma-amplified sequence 3 1 SVTLLEVCGS(1)WPEGFGLR;SVTLLEVCGS(1)WPEGFGLR 318.41 2.0320999999999996e-61 514540000.0 346730.0 346390.0 337660.0 324804.0 294626.0 339900.0 327650.0 338270.0 428530.0 352580.0 True False 344863.2442053242 357919.38175282284 385199.5930066665 365924.15309709596 332144.8747148821 316403.5130385363 311800.3177554509 363513.425100255 322924.5235078072 330078.0425410755 1.0447930481846845 1.0843477469673939 1.1669955082175199 1.1085988946131118 1.0062616469665637 0.9585718292641732 0.9446260507214742 1.1012953854845366 0.9783277949111743 1.0 18.33244764519745 3.236427247383815 23.61700930886264 1.0043634970214075 1.1046820831875006 0.515607534956677 0.04864177003057255 25.228650737497016 279292.32524044387 0.015017825273821558 0.01881654006960747 1723.5633370808077 -3.236427247383815 0.10031858616609313 SVTQATQTS(ph)PGVPWPSQSANFPEFSFDFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 SVTQATQTSPGVPWPSQSANFPEFSFDFTR 30 0 A0A0C4DGH6;A0JNW5;H0YHT7 A0A0C4DGH6 UHRF1BP1L UHRF1-binding protein 1-like 1 SVTQATQT(0.037)S(0.962)PGVPWPSQSANFPEFSFDFTR 166.27 1.8193e-12 123760000.0 52731.0 50558.0 44094.0 49980.0 47182.0 52722.0 48848.0 49158.0 42969.0 55375.0 True False 52447.10215496488 52240.79246704362 50302.051928081375 56307.46287543515 53190.348030376066 49077.45223423856 46485.035622518684 52826.41957926609 32379.86570510112 51840.92009107731 1.0116931193123617 1.0077134505958574 0.9703155700112507 1.0861586325341206 1.0260301695442133 0.9466933099955842 0.896686161064482 1.019010069390308 0.6246005211368585 1.0 15.661803703463628 1.9940600381717368 1.1350040571901303 0.8629259335339137 1.0170307691988008 0.27031086998780407 0.10359649574994748 0.6806572911207259 1.6181842136393767 0.0763182488940865 0.03535025877447179 98.64158412902951 -1.9940600381717368 0.15410483566488709 SVTSS(ph)PVEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVTSSPVEKK 10 1 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;F8VVB8 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 SVT(0.012)S(0.099)S(0.89)PVEKK;SVT(0.004)S(0.021)S(0.974)PVEKK 110.98 0.0011114 350920000.0 560390.0 562080.0 494950.0 458330.0 504040.0 669050.0 669630.0 634100.0 1013310.0 688700.0 True False 557372.9225051816 580788.4930154656 564634.6578174786 516354.53100636654 568226.5063208593 622800.1482742933 637237.4386649854 681419.7618945579 763593.3281583467 644746.576374266 0.8644837257447255 0.9008012051518461 0.8757466553645048 0.8008643239489345 0.8813176015858549 0.9659611560508186 0.9883533500069 1.056880000397247 1.1843309544230785 1.0 19.298372681713058 2.220096475528901 1.305172703484109 1.0895520190419725 0.8629665834644997 0.770686778007203 0.05084354474061027 0.20174689614846886 0.6647777240431881 0.03179045306938137 0.018008317730927738 165.99556141935886 -2.220096475528901 -0.2265854355774728 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR ddPTM_BT-474_Trastuzumab_2h_R1 5 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR 37 0 P02545;P02545-6;P02545-5;P02545-4 P02545 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;; 110.23 4.5812e-06 6224990000.0 231988.0 472431.0 1006062.0 867667.0 1018185.0 1052805.0 999384.0 79270.5 710348.0 424289.0 False True 230739.00238428975 488155.5802444293 1147706.7847523345 977513.5532360974 1147844.824494691 980027.0683863949 951039.9779023743 85186.06723744282 535292.2535755354 397210.5127679116 0.5808985285319213 1.228959366766953 2.889416941043891 2.460945825487893 2.8897644639263915 2.467273742472724 2.3942970977156963 0.21446075695186012 1.347628615983546 1.0 18.599544280881712 1.7488594020825008 24.999999999999968 0.8204436731195967 2.179655747234344 0.38841081839225866 0.7316531301169549 2.7186789789230428 6612.6659580068745 0.36067720445964613 0.20001455928692882 56.086637250512666 -1.7488594020825008 1.3592120741147475 SVTVVEDDEDEDGDDLLHHHHVSGSR ddPTM_BT-474_Trastuzumab_2h_R1 7 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;; 318.17 5.077799999999998e-82 10065540000.0 961162.0 1720276.0 2142037.0 2232662.6 2237317.7 2462793.7 2511265.9 214503.09999999998 2147803.3 1253365.9 False True 955987.210587138 1777534.3467311966 2443617.1906806305 2515317.4562399453 2522226.8474740474 2292546.5683117784 2389786.374449652 230510.41054667134 1618505.9558047177 1173375.0152014676 0.8147328843737104 1.5148902300651044 2.0825543061874923 2.143660316312485 2.149548792839247 1.9538055085638157 2.0366773993728917 0.19645075748190605 1.379359484253908 1.0 20.162232747314764 1.7532382876989936 24.999999999999996 0.8040259904358749 1.8435422194034519 0.4640031073958203 0.46854243954885383 3.98419879240059 6795.136907228848 0.220321526789387 0.12218003878036315 56.65500571589937 -1.7532382876989936 1.039516228967577 SVVALHNLINNK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVVALHNLINNK 12 0 P51665 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 ; 176.42 2.5027e-05 747590000.0 2086470.0 2139530.0 2053120.0 1907460.0 1908330.0 2306530.0 2341120.0 2112310.0 3115500.0 2488200.0 False True 2075236.6773486114 2210742.9626768027 2342181.449961049 2148944.2404237203 2151344.513941916 2147085.0100875995 2227871.081653105 2269941.298292844 2347726.770561159 2329400.9457448036 0.8908885699301862 0.9490607302771309 1.0054866055753913 0.9225308525564353 0.9235612777919794 0.9217326944121634 0.9564137447968472 0.9744742752163055 1.0078671835562838 1.0 21.151527552648364 1.6034892513730687 1.973695471475108 1.0037249781887614 0.9385316470907389 0.4776148891889408 0.028034022141024743 0.28674728934634897 2.3490571489985195 0.0227110486950475 0.008233301289521803 40.131856565456104 -1.6034892513730687 -0.0651933310980225 SVVLFGVETHVCIQQTALELVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVVLFGVETHVCIQQTALELVGR 23 0 Q96CN7 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 0 ;; 240.28 3.0019e-37 163055000.0 127751.0 143553.0 153311.0 161892.0 144975.0 163136.0 156872.0 140715.0 176711.0 148513.0 False True 127063.20281047047 148331.07482537904 174895.85619689952 182387.51060083922 163436.70691585288 151858.79230083743 149283.50205076486 151215.86783629196 133162.94185608526 139034.7731916239 0.9138951349627212 1.066863140927648 1.2579288776617794 1.3118121921158863 1.1755095733539775 1.092236055878905 1.073713421641762 1.0876118568401556 0.957767174349644 1.0 17.085086226717134 1.6657648974359816 1.1822122825108734 0.9839682961239746 1.149063342727931 0.23486714070286419 0.10422850845231516 0.7001083904584805 1.850145067926824 0.09750883327421594 0.03667041186896765 46.31961035798906 -1.6657648974359816 0.16509504660395646 SVVLMSHLGRPDGVPMPDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVVLMSHLGRPDGVPMPDK 19 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 143.04 8.9622e-08 2326800000.0 2386500.0 1984300.0 1826500.0 1650500.0 1896900.0 2795900.0 2397200.0 2095300.0 2863000.0 2374100.0 False True 2373651.349165078 2050346.2259653204 2083655.323777398 1859453.1307704246 2138458.971192838 2602626.0138406684 2281238.277806703 2251661.9257178116 2157452.0122345057 2222582.9054307328 1.0679697676812052 0.9225060720819172 0.9374927336506214 0.8366181194982537 0.9621503728691769 1.1709916455675626 1.026390634172813 1.0130834355901983 0.9706958543426731 1.0 21.083805803912625 2.982539487079496 24.946665988955626 1.0374460664222194 0.9345329561323286 0.28609827142208033 0.07207918209033361 875.6335858383048 1251061.4095274787 0.022019548095421414 0.02383721702671963 960.5931538134324 -2.982539487079496 -0.10291311028989081 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK ddPTM_BT-474_Trastuzumab_2h_R1 3 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK 30 2 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;; 166.2 1.7092e-12 8238760000.0 3728040.0 3372250.0 2975690.0 2545460.0 2849380.0 4615650.0 4488310.0 3575440.0 6046070.0 4711560.0 False True 3707968.6468641832 3484493.302681827 3394641.2868388584 2867714.975008103 3212231.6534015746 4296580.979571395 4271193.298290763 3842257.4885164443 4556097.061687282 4410864.20703054 0.840644479817356 0.7899797271309877 0.7696091122977875 0.6501480980614208 0.728254487699157 0.9740905133109771 0.968334797403839 0.871089498151454 1.0329261677168056 1.0 22.07262991559443 2.737860800172097 24.999413337754525 0.9538638316379819 0.7525358094136458 0.756106207602719 0.06031503168580239 34.896802901873215 1246588.720256164 0.020235940119509948 0.020139560593887405 546.8406617343437 -2.737860800172097 -0.2013280222243361 SVVLYVILAPFDNEQSDLVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVVLYVILAPFDNEQSDLVHR 21 0 O00232-2;O00232 O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 0 ; 143.57 1.3583e-07 245673000.0 266780.0 297470.0 262844.0 267010.0 283880.0 317000.0 311310.0 265757.0 328630.0 298610.0 False True 265343.6861220442 307371.10912558733 299850.150518996 300813.4386228476 320030.43531141436 295086.536137734 296250.7459803124 285589.136826702 247643.53991639015 279552.45414711704 0.949173159404298 1.09951139603958 1.0726078275141777 1.0760536498976387 1.1447956566426543 1.0555676824158446 1.0597322312341702 1.0215940965283319 0.8858571486053399 1.0 18.092759484652902 1.4810549713772836 3.631056935831387 0.9431144387585376 1.0692977213845591 0.44699055941994414 0.053285570799634814 0.17261910170056088 4.569510704778357 0.03563135275695161 0.013275182767143965 30.272965877733256 -1.4810549713772836 0.12618328262602152 SVVS(ph)DLEADDVK ddPTM_BT-474_Trastuzumab_2h_R1 4 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 SVVS(1)DLEADDVK;SVVS(1)DLEADDVK;SVVS(1)DLEADDVK;SVVS(1)DLEADDVK 274.24 9.062899999999999e-28 1216100000.0 1933740.0 2316540.0 2033060.0 1720090.0 2012310.0 3253830.0 3052700.0 2890860.0 4371800.0 2845320.0 True False 1923328.9586987107 2393644.6335219974 2319297.1763256937 1937853.2176351969 2268565.750604171 3028900.390791937 2905029.2385535273 3106590.6526896404 3294428.4691186887 2663729.2415989903 0.7220437155032206 0.8986065836350298 0.8706955422141404 0.7274963188345439 0.851650278555485 1.137090190508154 1.0905872838673683 1.1662561660451676 1.2367730239508505 1.0 21.345016014475696 2.7666165493801835 4.58017395579655 1.1372368999413793 0.8137799591816683 0.8066820805526812 0.07644606602435522 0.08289212590879146 4.410184714354913 0.023612926216083022 0.024279887461789957 584.2739846643495 -2.7666165493801835 -0.323456940759711 SVVS(ph)FDK ddPTM_BT-474_Trastuzumab_2h_R1 7 SVVSFDK 7 0 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK 135.43 0.0032289000000000003 3855980000.0 9023530.0 5816210.0 5158660.0 4752370.0 4817470.0 7051580.0 5882960.0 6956210.0 10815530.0 7374440.0 True False 8974948.317088429 6009799.033876803 5884954.488123471 5354019.554728523 5430946.249118213 6564120.87223383 5598378.749710381 7475317.713118661 8150187.552176973 6903796.92562427 1.3000017836238538 0.8705063458009191 0.8524228843233723 0.775518111614268 0.7866607763273865 0.9507986609325527 0.8109130106262725 1.0827835455838979 1.1805369769679313 1.0 22.71895859775998 1.636338655498255 6.134107895167515 1.1034963268996187 0.8957341976367462 0.2352849737524847 0.14811450392760156 0.17517022435881727 13.813238268385463 0.07763740202235528 0.037935577092114536 43.285122954353746 -1.636338655498255 -0.20776212926287252 SVVS(ph)FDKVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVVSFDKVK 9 1 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 SVVS(1)FDKVK 127.37 0.00027085 441330000.0 1437300.0 791340.0 807480.0 764560.0 699540.0 1100800.0 1012900.0 1071900.0 2226400.0 1295300.0 True False 1429561.7364990427 817679.2735248692 921166.1652580206 861353.2176078962 788622.2725015742 1024704.2870044734 963902.1573462405 1151890.6209979116 1677733.5522315416 1212632.845037877 1.1788908261464663 0.6743007802162316 0.7596414438446516 0.7103165819172509 0.6503388686267535 0.8450243544017367 0.7948837616353139 0.9499088085165067 1.3835461896788197 1.0 20.20971137384372 1.4831632019735599 3.877788806378543 1.192534383171641 0.7902644161988149 0.46294893403848303 0.16498263086424836 0.15693703191273217 4.8042144156368485 0.10615598327669763 0.04049196790155659 30.420279637454364 -1.4831632019735599 -0.40226996697282613 SVVS(ph)FDKVKEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVVSFDKVKEPR 12 2 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 S(0.021)VVS(0.979)FDKVKEPR;S(0.238)VVS(0.762)FDKVKEPR 96.096 0.002962 415110000.0 1476920.0 1221460.0 1177660.0 1427740.0 1342690.0 1650650.0 1750020.0 1676920.0 3804800.0 2144370.0 True False 1468968.4268212381 1262115.5577118385 1343464.2915957805 1608491.737610521 1513673.6127528641 1536544.4507121497 1665364.846874388 1802060.2856272194 2867158.021707948 2007514.4707124797 0.7317349131236358 0.6286956214387365 0.669217737254455 0.8012354386863558 0.7540038365031818 0.7653964507497774 0.8295655504208342 0.8976574325701656 1.4282128789290247 1.0 20.936978956444044 1.4763877231193179 3.334968551138344 1.211955639434335 0.7391253043429036 0.7223712404449492 0.11470456176841917 0.10558195434980003 2.315960174624541 0.07883937979685388 0.028446390749692404 29.949372199846422 -1.4763877231193179 -0.47283033509143135 SVVSDLEADDVKGSVPLS(ph)SSPPATHFPDETEITNPVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 S(0.028)VVS(0.028)DLEADDVKGS(0.029)VPLS(0.296)S(0.296)S(0.296)PPAT(0.024)HFPDET(0.003)EIT(0.002)NPVPK 40.621 0.076097 446740000.0 17187.0 33497.0 32397.0 32356.0 30899.0 38358.0 36186.0 31689.0 63385.0 39065.0 True False 17094.467101655213 34611.927395635896 36958.21600022796 36452.26628246458 34833.80449727842 35706.40174501959 34435.54493605599 34053.79409348152 47764.61606548518 36571.83825477086 0.4674215986237774 0.9464092877836325 1.0105648981264075 0.9967304905082074 0.9524761718187433 0.9763359855273784 0.9415863839320083 0.9311480012640366 1.3060490898144612 1.0 15.158445523986163 4.741428126047933 3.6885659770376322 0.999749348072707 0.408050517684812 0.7158911351907455 0.10239800082367889 0.14167436761414226 3.5918752793301865 0.02387737609236274 0.23092416323978615 55135.09485146221 -4.741428126047933 -0.591698830387895 down SVWGSLAVQNS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 SVWGSLAVQNSPK 13 0 P18615;P18615-3;P18615-4 P18615 NELFE Negative elongation factor E 1 SVWGSLAVQNS(1)PK;SVWGSLAVQNS(1)PK 255.91 7.867499999999999e-24 1060720000.0 953090.0 598720.0 605580.0 570160.0 515210.0 850940.0 863150.0 769810.0 1342630.0 957070.0 True False 947958.6693382537 618648.0332661176 690840.4002042807 642342.1975401778 580818.9396110816 792116.5206972993 821396.1369467941 827257.1312159747 1011756.826820264 895988.9732111486 1.0580026068187536 0.690463891591138 0.7710367212761193 0.7169085968079247 0.6482434013997691 0.8840694968135833 0.9167480421137103 0.9232894108631217 1.1292067838672313 1.0 19.773121451818483 1.902206350039449 1.2854331191829442 1.0444722421201833 0.773791742283874 0.4510232087301641 0.11458136160947267 0.39129343910308045 1.1983693941579374 0.08565876370004093 0.03718026935341728 79.83739353770214 -1.902206350039449 -0.27068049983630926 SVWVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 SVWVAR 6 0 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 ;;; 137.2 0.029866000000000007 4090670000.0 3321620.0 3723970.0 3321500.0 3100520.0 2742360.0 3277850.0 3069150.0 2966690.0 4409000.0 3327800.0 False True 3303736.7669866756 3847920.0902625965 3789138.329004453 3493045.514096525 3091583.2907588095 3051259.9447289347 2920683.4892084254 3188079.4723465773 3322461.0275731534 3115416.9549270826 1.0604477072520782 1.2351220224878883 1.2162539986860728 1.1212128471510745 0.992349767458709 0.9794066055599131 0.9374936104746162 1.0233235289114602 1.0664579013472426 1.0 21.570993830021287 3.353991986629324 3.6245392577954494 0.9969785543771381 1.1763384236682102 0.6862447532593974 0.0530785468133886 0.12559847710684324 3.1641561604543282 0.01530444536420656 0.021196199646683882 2259.394080699093 -3.353991986629324 0.17935986929107206 SVYAHFPINVVIQENGSLVEIR ddPTM_BT-474_Trastuzumab_2h_R1 3 SVYAHFPINVVIQENGSLVEIR 22 0 A0A2R8Y5Y7;P32969;D6RAN4;E7ESE0;H0Y9V9 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 ;; 265.05 1.5642e-37 2462430000.0 820862.0 1096196.0 958801.0 1121307.0 1142398.0 1119297.0 1073040.0 996305.0 1117701.0 1103544.0 False True 816442.5701983416 1132682.221195525 1093791.84675231 1263264.351229804 1287875.6137765585 1041922.6329317284 1021132.9557891313 1070654.3382342807 842258.5649760807 1033114.8771284497 0.7902727840563575 1.0963758690067686 1.058732064523659 1.2227723936577668 1.246594780781996 1.0085254370044112 0.9884021403576897 1.0363361925540866 0.8152612876093165 1.0 19.97856925280969 1.8209689315083921 1.4513079931697512 0.9297520213388809 1.0845639974655135 0.16104970970452803 0.12819411153760923 0.7147731416673478 2.843586192091876 0.09946036142219523 0.04115792150728029 66.21691318542013 -1.8209689315083921 0.15481197612663256 SVYATMGDHENRS(ph)PVKEPVEQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SVYATMGDHENRSPVKEPVEQPR 23 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR 230.85 1.4979e-33 1391250000.0 506490.0 401610.0 379620.0 385090.0 398140.0 549640.0 517470.0 472640.0 769350.0 536670.0 True False 503763.1141163295 414977.34607162856 433067.19628380856 433842.35451583326 448840.7690393355 511644.68051338923 492437.9991726325 507910.7968172903 579754.0012618299 502419.26113369677 1.0026747640598022 0.825958274639476 0.861963761712883 0.8635066130563518 0.8933590006611953 1.0183619938433004 0.9801336000961791 1.0109301854216377 1.1539247121092235 1.0 18.938532248000367 2.5197466440063265 1.2582635925385421 1.0480175810451515 0.8787325046000907 0.5694925802865813 0.0618129009084107 0.32331499664925506 1.0381358962714844 0.0321611869051244 0.024370557636956527 330.93800461885417 -2.5197466440063265 -0.16928507644506086 SWAQASVTHGAHGDGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 SWAQASVTHGAHGDGGR 17 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 0 ; 176.11 6.6243e-10 580950000.0 124537.0 230900.0 216620.0 251410.0 272320.0 254400.0 223390.0 104529.0 234940.0 212430.0 False True 123866.50662936144 238585.36691800237 247118.21310520667 283238.48022235214 306998.337832903 236813.9267931846 212583.77226732834 112329.484767507 177042.18503470992 198872.53552952682 0.6228437038807243 1.1996898731277017 1.2425959796168875 1.4242211950895522 1.5436939897984185 1.1907824585362345 1.0689448480218415 0.5648315614240726 0.8902294354688522 1.0 17.601484526922185 1.9608622486958274 5.229469975168251 0.7764150438173668 1.224885797520807 0.31972101623277216 0.2478751455086456 0.2085546116051967 14.192236570240569 0.11215804834252693 0.06955463346789904 91.38233452625518 -1.9608622486958274 0.44847075370344014 SWDIFFR ddPTM_BT-474_Trastuzumab_2h_R1 2 SWDIFFR 7 0 Q02218;A0A0D9SFS3;E9PDF2;E9PCR7;Q02218-2;Q02218-3;C9J4G7 Q02218 OGDH 2-oxoglutarate dehydrogenase, mitochondrial 0 ; 134.12 0.007456 170905000.0 535420.0 653920.0 678070.0 601070.0 689760.0 1034580.0 518760.0 440570.0 714220.0 685060.0 False True 532537.3582107538 675685.3318970122 773536.3621099055 677165.4003709047 777596.8474721753 963061.9197393605 493665.5969443546 473447.57056913007 538210.0510576773 641338.8842906264 0.830352519167435 1.0535542884544975 1.2061273393168737 1.0558620675556034 1.2124586026500817 1.5016428027821613 0.7697421894048876 0.7382174731114302 0.8391975977770034 1.0 19.29072735467132 2.1681051718443505 24.999995635140646 0.8051323825790716 1.1412841231912285 0.42828486148748124 0.1719494507713882 42.316910229657154 15014.569906785904 0.06571089983616558 0.048530725599634734 147.26690912879567 -2.1681051718443505 0.3361517406121569 SWEDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 2 SWEDSPER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 SWEDS(1)PER;SWEDS(1)PER 183.13 0.00023593 4446800000.0 4045800.0 4348300.0 3855500.0 4281100.0 4143000.0 4831400.0 4530200.0 3599500.0 4733500.0 4722500.0 True False 4024017.862330641 4493030.536897144 4398320.887393244 4823086.821048932 4670586.492515116 4497416.689892265 4311056.918955419 3868112.967890648 3566992.3506503785 4421106.006864338 0.9101835278509118 1.016268447289238 0.9948462851974782 1.0909231340665586 1.0564294285781493 1.0172605413463158 0.9751082449192456 0.8749197512760163 0.8068099577599275 1.0 22.075975896184342 1.887183062761912 3.1417641398884375 0.880958449305197 1.0181830211985383 0.4210146863438934 0.062318883383681585 0.2160351914918754 3.7146058975450202 0.03213115766376023 0.017149882897490937 77.12284869298193 -1.887183062761912 0.13722457189334136 SWEEQMIEVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 SWEEQMIEVGR 11 0 Q00059;Q00059-2 Q00059 TFAM Transcription factor A, mitochondrial 0 ;;; 206.49 6.0992e-08 442539000.0 259384.0 388615.0 339591.0 365091.0 416775.0 535307.0 338134.0 297318.0 392503.0 350690.0 False True 257987.50536427155 401549.8153522714 387402.46102211345 411311.48316637665 469848.82583103696 498302.48706713604 321777.1666226815 319505.37891021295 295775.89492074074 328308.6639591854 0.7858077890882099 1.2230862582480955 1.1799946317294705 1.252819460218418 1.4311191796310545 1.517786588565582 0.9801056199439321 0.9731859496401628 0.9009079789545577 1.0 18.324693297104396 2.044910114368023 24.96170966036753 0.96045012095954 1.2398650451016358 0.34391724150022573 0.18146404380416462 145.16739336028175 80685.56105145563 0.07096881726552173 0.05241391976233263 110.89452738641005 -2.044910114368023 0.2794149241420958 SWGNNYPQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 SWGNNYPQHR 10 0 Q9BTL3;A0A3B3IU46 Q9BTL3 FAM103A1 RNMT-activating mini protein 0 ; 108.47 0.0034098 0.0 215900.0 249430.0 245100.0 216280.0 189426.0 238630.0 248860.0 211023.0 278940.0 249800.0 False True 214737.618388745 257732.12676638097 279607.9495526088 243661.0258243118 213548.27828413405 222134.06977459817 236821.6910624798 226770.60781308167 210198.97460450316 233857.55013546042 0.9182411184259806 1.1020902537339134 1.195633621367571 1.0419207149103067 0.9131553724069958 0.949869138909257 1.01267498494405 0.9696954735125136 0.8988333901674195 1.0 17.835270481629205 3.422260689043547 6.627352102322475 0.9610076436302063 1.0820688938261653 0.35395881434492293 0.07121625908794069 0.21059500118464483 19.46610343618072 0.019957333420759418 0.027220142563585934 2643.9953623213187 -3.422260689043547 0.12106125019595904 SWHDIDKDNAK ddPTM_BT-474_Trastuzumab_2h_R1 1 SWHDIDKDNAK 11 1 F5H365;Q15436;Q15436-2 F5H365 SEC23A Protein transport protein Sec23A 0 89.805 0.0071857 208100000.0 142730.0 166870.0 195090.0 159220.0 172160.0 275760.0 221640.0 158130.0 271130.0 223670.0 False True 141961.55753879366 172424.16707495484 222556.97624732144 179377.23567480574 194083.55552773378 256697.3602692163 210918.42645297726 169930.4635678698 204313.64445586482 209395.18910647865 0.6779599767528823 0.8234390093235435 1.062856205995019 0.8566444933154189 0.9268768607145086 1.2258990350474777 1.0072744620017227 0.8115299319577929 0.9757322760265049 1.0 17.675868770898674 4.479893618786072 3.957242540638995 0.9714942375213447 0.6974803205397618 0.4470976717584947 0.10826853024656266 0.20583368629524396 7.151571187467998 0.028515471777141397 0.1116608212041787 30192.120683933892 -4.479893618786072 -0.27401391698158284 SWHDIEK ddPTM_BT-474_Trastuzumab_2h_R1 5 SWHDIEK 7 0 A0A2R8YFH5;Q15437;Q5QPE2 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ;;;; 120.92 0.0044882 1989320000.0 2029305.0 3069333.0 3038875.0 3047103.0 2922957.0 3281847.0 3232553.0 1961889.0 3268626.0 3160275.0 False True 2018379.4473569787 3171493.8934540204 3466722.1856249906 3432865.927373493 3295178.2482265234 3054980.641526862 3076182.0618383484 2108295.119450483 2463116.919644435 2958583.543852452 0.6822114087502805 1.0719636090871822 1.1717506483223648 1.1603072471982538 1.113768869252812 1.0325821786830087 1.0397482498779695 0.7126028682986638 0.832532488312682 1.0 21.49647520350282 1.7592147293014402 24.999999999987818 0.8224157730272141 1.0525912497707524 0.2564442568207934 0.14538349234880527 10.899434776781465 13204.310846510656 0.06721456770086293 0.03727458224498686 57.44003942252628 -1.7592147293014402 0.23017547674353822 SWHDVQVSSAYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 SWHDVQVSSAYVK 13 0 O43399;O43399-7;O43399-5;A0A087WYR3 O43399 TPD52L2 Tumor protein D54 0 67.358 0.061073 0.0 223810.0 193810.0 152280.0 146810.0 150860.0 187280.0 159670.0 127180.0 261180.0 183950.0 False True 222605.03182762864 200260.84868938106 173719.70035851223 165396.13094723172 170071.1267827249 174333.77440970004 151946.1521013667 136670.81740695424 196815.6886326957 172210.1535124816 1.2926359293413816 1.1628864187434012 1.0087657249891553 0.9604319348989141 0.9875789743744601 1.012331566135353 0.8823298104217403 0.7936281027532357 1.1428808616585475 1.0 17.39381068099422 4.618153414312863 1.0409258796464733 0.9408313625023265 1.4397032466051154 0.5862700322875225 0.0874964909359323 1.0098982799856273 1.0251396159752895 0.028091585865710807 0.5354287903645508 41510.065083964735 -4.618153414312863 0.49887188410278893 SWHEES(ph)PFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SWHEESPFEK 10 0 Q9BY84 Q9BY84 DUSP16 Dual specificity protein phosphatase 16 1 S(0.139)WHEES(0.861)PFEK 196.88 3.4125e-07 161750000.0 140340.0 141490.0 115280.0 128750.0 130870.0 174950.0 159740.0 142890.0 196760.0 165820.0 True False 139584.42503323997 146199.40911748883 131510.42196827722 145049.73679896505 147535.51877273768 162856.11828800186 152012.76593394077 153553.17738071817 148271.13444892113 155237.2256343555 0.89916851105041 0.9417806104177984 0.8471577705081885 0.9343747043032965 0.9503874999688646 1.0490790312859097 0.9792288242253852 0.9891517756339969 0.9551261551024994 1.0 17.244115029373898 3.1942224721892516 2.641130232988272 0.9922200281023478 0.9008540502271359 0.6281387354548429 0.03226534663306469 0.1721202877080282 2.4541219141987693 0.00955510418576532 0.012426305529525053 1563.9485875736116 -3.1942224721892516 -0.09136597787521183 SWPEGHFATITLTFIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SWPEGHFATITLTFIDK 17 0 O95433;G3V438 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 ; 238.62 2.9590999999999996e-20 425030000.0 1086630.0 1106580.0 1033880.0 962980.0 919480.0 1104770.0 1196960.0 1096130.0 1508860.0 1239730.0 False True 1080779.7048159426 1143411.846358265 1179441.3173539438 1084893.1692634367 1036570.3278150602 1028399.8502488476 1139058.4719687598 1177928.78663536 1137021.6706881442 1160609.3700137483 0.9312174558810773 0.9851823325747581 1.0162259135819078 0.9347616840716918 0.8931259341829898 0.8860861171891672 0.9814313940574741 1.0149226923968453 0.9796764527884824 1.0 20.146451050767162 2.0130906898141085 24.985739461887757 0.99943761428416 0.9431921474772779 0.33473132076025547 0.03702688809831831 291.87628610838067 557091.6325634703 0.015696711644509434 0.011586873831164005 103.06013091833363 -2.0130906898141085 -0.05624546680688214 SWPFNLEEIKDLLPEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 SWPFNLEEIKDLLPEMR 17 1 D6RHI9;O00584;H0YAE9;D6REQ6 D6RHI9 RNASET2 Ribonuclease T2 0 ; 72.819 0.028947000000000007 145449000.0 133095.0 154394.0 130659.0 137477.0 143597.0 163742.0 184224.0 154576.0 187513.0 160195.0 False True 132378.43130824465 159532.91095685595 149054.65149161287 154881.57410416563 161883.22678389883 152422.90094720773 175312.3813159777 166111.24604102358 141302.93369546934 149971.2179501605 0.8826922466698749 1.0637568537309143 0.9938883842441539 1.0327419902373332 1.0794286330174168 1.016347690113859 1.1689735117990356 1.1076208375944967 0.9422003476855682 1.0 17.194326123792152 5.6094464762461715 1.1876845631258852 1.0599880876655106 7.070252972099738e-22 0.34296733135915847 0.06315855526210436 11.248625103793062 2.8287175162375013 0.017973169141289068 24.15924278870813 406861.387902106 -5.6094464762461715 -1.0599880876655106 SWPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SWPSPK 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 S(0.001)WPS(0.999)PK;SWPS(1)PK;S(0.001)WPS(0.999)PK 94.302 0.046822 2141550000.0 6186700.0 5190800.0 4485000.0 4433500.0 4381700.0 6386100.0 5882700.0 5546600.0 8975400.0 6326700.0 True False 6153391.494606991 5363572.640095144 5116449.015681162 4994780.645423007 4939683.52262937 5944643.938262409 5598131.32690367 5960515.457064104 6763532.934198248 5922924.5894396175 1.0389109977152653 0.9055615277726513 0.8638382843508804 0.8432963428790803 0.8339939919945403 1.0036669973582841 0.9451633635324274 1.0063466733463922 1.1419245394846675 1.0 22.497878287208888 1.8919030323138555 1.3232225437871716 1.0644319431465905 0.900053644573489 0.4430019891955884 0.06956290459715461 0.3951627973575857 1.285333901047449 0.05359103891935475 0.02313431132276443 77.96560123403648 -1.8919030323138555 -0.1643782985731015 SWQGDGS(ph)PMANGAGAVVHHQR ddPTM_BT-474_Trastuzumab_2h_R1 5 SWQGDGSPMANGAGAVVHHQR 21 0 Q9H201;I6L9I8 Q9H201 EPN3 Epsin-3 1 SWQGDGS(1)PMANGAGAVVHHQR;SWQGDGS(1)PMANGAGAVVHHQR;SWQGDGS(1)PMANGAGAVVHHQR;SWQGDGS(1)PMANGAGAVVHHQR;SWQGDGS(1)PMANGAGAVVHHQR 219.57 3.227e-25 5869510000.0 1084485.0 1174987.0 1212759.0 1183977.0 1077462.0 1337446.0 1406020.0 839333.0 1375113.0 1270977.0 True False 1078646.25325761 1214095.7320003598 1383504.9257098017 1333868.3668041038 1214670.3990823852 1244991.5060292368 1338005.4410820059 901968.2905066154 1036234.8267201631 1189862.1597218448 0.9065304282890768 1.0203667055721648 1.1627438644096597 1.1210276382904079 1.0208496750298706 1.0463325485703987 1.1245045740380488 0.758044352563888 0.8708864453361596 1.0 20.18236302268605 1.7449553220689178 24.99999999999991 0.8585983497768434 1.0607073630761479 0.47331664488096115 0.08693088240538774 1.0050099106742179 3941.9127989404446 0.04002132579448188 0.022193813328249247 55.5847071707056 -1.7449553220689178 0.20210901329930453 SWS(ph)LATFR ddPTM_BT-474_Trastuzumab_2h_R1 4 SWSLATFR 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 S(0.001)WS(0.999)LATFR;S(0.003)WS(0.997)LATFR;S(0.002)WS(0.998)LATFR;S(0.004)WS(0.996)LATFR 150.61 0.00051025 258973000.0 486360.0 409398.0 468037.0 398072.0 278361.0 385835.0 474225.0 310543.0 458506.0 397848.0 True False 483741.49179967586 423024.5649436829 533932.5413494672 448467.8743847579 313808.62337509077 359163.1346078951 451284.9250345758 333717.2955654025 345513.3399656286 372457.0000251903 1.298784804063178 1.1357675246137744 1.43354143246967 1.2040795967170084 0.8425365165747107 0.9643076505035586 1.2116430218899206 0.8959887867400325 0.9276596759955124 1.0 18.5067143512028 3.396086878394877 6.295751601526201 0.9805429364555603 1.2811532759393567 0.624137357823132 0.11315015960513694 0.13766398826787815 8.502505269177679 0.03148627612882541 0.04284763211562237 2489.355251290962 -3.396086878394877 0.30061033948379634 SWS(ph)PPPEVSR ddPTM_BT-474_Trastuzumab_2h_R1 15 SWSPPPEVSR 10 0 Q9NR19;Q9NR19-2;F8WCJ4;C9IYL0;B4DEH9;C9JY31;C9JXD9 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 1 SWS(1)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;S(0.004)WS(0.996)PPPEVSR;S(0.001)WS(0.999)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;S(0.05)WS(0.95)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;S(0.004)WS(0.996)PPPEVSR;SWS(1)PPPEVSR;S(0.005)WS(0.994)PPPEVSR;S(0.001)WS(0.999)PPPEVSR 223.77 4.488899999999999e-09 142452638000.0 7561926.0 8971621.0 8156046.0 8403512.0 8053676.0 8881603.0 8966119.0 7815958.0 8985828.0 8887835.0 True False 7521213.430624964 9270235.981525568 9304346.383177316 9467395.757568495 9079263.90072245 8267638.689654609 8532393.570069231 8399224.474590529 6771391.093326297 8320605.7610416375 0.9039261859804063 1.1141299381026135 1.118229447517115 1.1378253013616275 1.0911782340695635 0.9936342289361878 1.0254534123007266 1.009448676671715 0.8138098700735223 1.0 22.98825713334413 1.489277914465302 3.4570433301669334 0.9059701601607301 1.0610532950067473 0.34516007565508067 0.07873878097982537 0.21986729778770955 5.339878316192742 0.05494838756112923 0.020372825852220895 30.85161580556189 -1.489277914465302 0.1550831348460172 SWSHYTVPAGMTVIQWVSDFSER ddPTM_BT-474_Trastuzumab_2h_R1 1 SWSHYTVPAGMTVIQWVSDFSER 23 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 161.68 1.7498e-11 222560000.0 60441.0 81871.0 73151.0 94099.0 69844.0 72793.0 88017.0 69121.0 73664.0 88106.0 False True 60115.592371626386 84596.02674293531 83450.02496010989 106011.92375181218 78738.21940217844 67760.99124629052 83759.28145240813 74279.16000932618 55510.49424702857 82482.99964865837 0.7288240319543737 1.0256177285413663 1.0117239348177276 1.2852578616609092 0.9545993688101662 0.8215146337417748 1.0154732709671832 0.900539024110702 0.672993155965218 1.0 16.33180917951484 3.001735391643709 24.995628449179186 0.8891115699701951 1.0269668270532537 0.13620498976115725 0.15346275620482666 111.48360737538363 1605697.4821525482 0.04479710349520166 0.05318101125641193 1004.0038811299141 -3.001735391643709 0.13785525708305857 SWSTATS(ph)PLGGERPFR ddPTM_BT-474_Trastuzumab_2h_R1 3 SWSTATSPLGGERPFR 16 1 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;D6RD46;H0Y8P3;D6RJ93;Q6NVB9 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 SWS(0.058)T(0.178)AT(0.175)S(0.589)PLGGERPFR;SWSTAT(0.003)S(0.997)PLGGERPFR;SWS(0.001)T(0.001)AT(0.168)S(0.83)PLGGERPFR 192.23 1.47e-12 735920000.0 313207.0 363613.0 358640.0 363303.0 364086.0 377835.0 332457.0 277823.0 320090.0 328591.0 True False 311520.72831256886 375715.6388962995 409133.39464523765 409297.1225497038 410450.1939932077 351716.15577792097 316374.7848009277 298555.56301660894 241208.10848625304 307620.04105909157 1.0126802117314846 1.2213626836624967 1.3299959041571225 1.3305281448521775 1.334276507408577 1.1433460400272129 1.0284596013695817 0.9705335256725311 0.7841105139177805 1.0 18.230789970567233 2.1461340891925973 1.7240711088511742 0.9105602936687521 1.252763735274703 0.6589509966822322 0.10355212052440321 0.22556134990475524 1.300953416661446 0.0606756827337644 0.034484381559296985 140.0019514360696 -2.1461340891925973 0.34220344160595084 SWTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 SWT(0.069)S(0.931)PK;SWTS(1)PK;SWT(0.003)S(0.997)PK 125.5 0.018774 1709600000.0 9974300.0 8591400.0 7402010.0 7449360.0 7355040.0 9762200.0 10145300.0 9111810.0 13453300.0 9290290.0 True False 9920599.477048904 8877359.555389037 8444148.66857571 8392448.212199913 8291660.747262451 9087362.091746975 9654533.080190357 9791779.53103367 10137914.479984108 8697375.738382569 1.1406428531388038 1.0206940371924118 0.9708846579216606 0.9649402836723526 0.9533520221128715 1.0448395429949462 1.110051281052943 1.125831495105054 1.1656291259493676 1.0 23.052148731165904 2.3628272003386126 3.6768820734740513 1.1127044020104029 1.0054340571727276 0.3021513802380609 0.06315914441166788 0.24686104718026775 6.404759121356335 0.023368023541839495 0.019039854485171023 230.58295490526226 -2.3628272003386126 -0.10727034483767528 SWVIGS(ph)PEILR ddPTM_BT-474_Trastuzumab_2h_R1 5 SWVIGSPEILR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR 202.61 4.1386e-08 713041000.0 717735.0 822348.0 771681.0 767194.0 762678.0 782626.0 770623.0 738405.0 805769.0 819738.0 True False 713870.7945078545 849719.3560601355 880326.9772285072 864320.6817378273 859800.5225533298 728524.9067234405 733345.0214242588 793508.5306446155 607198.0267014273 767421.6190269886 0.9302198124324005 1.1072392736830792 1.147122983510252 1.126265745332659 1.1203756855891915 0.9493150683546482 0.9555959895344942 1.0339929329208921 0.7912182972787393 1.0 19.549659882098002 2.7332076341565807 24.623006161812622 0.9560412810515513 1.0930165847040556 0.4205938861518005 0.08167465430244256 368.19706466742275 1693651.9269676807 0.025959331103742878 0.025159474572623724 541.0129168646101 -2.7332076341565807 0.13697530365250432 SWWDAVCTLIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SWWDAVCTLIHR 12 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;O14715;Q99666;J3KQ37;F8W705;Q99666-2;F8VYC4;A0A286YES2;P0DJD0;A0A1W2PNU4;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 0 117.2 0.00075932 73548000.0 109980.0 132050.0 141670.0 139320.0 111860.0 112290.0 132930.0 103770.0 180700.0 124990.0 False True 109387.8798999267 136445.2044240893 161615.9045822855 156957.89771519866 126104.70795383543 104527.6566022276 126499.66805808664 111513.84433338296 136168.9062559465 117013.03119067736 0.9348350246706696 1.1660684543907458 1.381178685294683 1.3413710944675006 1.077697985178615 0.8932992807604108 1.081073336626503 0.953003637275807 1.1637071945777893 1.0 16.836309679350556 3.029430897587598 11.020018591990985 1.0124169684179423 1.214924719865853 0.3153202634271828 0.13036198914386923 0.6463706283438626 237.85132978342028 0.03888411935415549 0.04638264908344752 1070.1160987138617 -3.029430897587598 0.20250775144791078 SYCAEIAHNVSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 SYCAEIAHNVSSK 13 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 ;;; 186.16 8.0436e-06 7322500000.0 8236100.0 8503300.0 8441500.0 8111300.0 8162300.0 9773500.0 9637700.0 9338200.0 11671300.0 10446400.0 False True 8191757.7527167285 8786327.200146599 9629989.825166678 9138189.748329671 9201720.523257567 9097880.949344303 9171487.63141068 10035063.902418792 8795064.502407465 9779701.80838701 0.8376285814452471 0.8984248571476383 0.9846915595021579 0.934403719803892 0.9408999071286847 0.9302820400456402 0.937808515137473 1.026111439697761 0.8993182690769645 1.0 23.221359046145874 4.49872917476677 3.2904461441529174 0.9578416428652087 0.8416014546529292 0.5257121601653982 0.03578277192551693 0.19196281061070658 4.014716528042462 0.008896766247966661 0.04153173520616449 31530.377816676795 -4.49872917476677 -0.11624018821227944 SYDLTPVDKFWQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYDLTPVDKFWQK 13 1 Q8WVM8;Q8WVM8-2;Q8WVM8-3 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 0 ; 94.688 0.004596899999999999 519880000.0 427210.0 460570.0 400650.0 440520.0 493900.0 441750.0 477230.0 455740.0 668310.0 478470.0 False True 424909.94882749324 475899.794029556 457058.03748777154 496289.78683246643 556795.2374253471 411212.8622676474 454144.56170436036 489749.6330008286 503613.9553951952 447933.63496122387 0.9486002292823495 1.0624337109017346 1.0203699874588286 1.1079538308736931 1.243030650005881 0.9180218455871141 1.0138657297831053 1.0933531103178367 1.1243048435931617 1.0 18.772925475459317 5.228043045260729 1.4804941935761642 1.0702342677999939 0.683631295637497 0.1487243464380622 0.08275911970785832 8.564544683569514 6.3682093639659625 0.022267292907292867 6.959661477041856 169060.8488634866 -5.228043045260729 -0.38660297216249684 SYDPPCPGHWT(ph)PEAPGSGTTCPGLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 SYDPPCPGHWTPEAPGSGTTCPGLPR 26 0 H3BM67;H3BUP2;H3BUN4;O60936;O60936-3;J3QLT7 H3BM67 NOL3 Nucleolar protein 3 1 SYDPPCPGHWT(1)PEAPGSGTTCPGLPR;SYDPPCPGHWT(1)PEAPGSGTTCPGLPR 224.9 7.069799999999998e-34 1749160000.0 283690.0 280100.0 300820.0 297880.0 305760.0 321290.0 339200.0 254870.0 333900.0 292700.0 True False 282162.64456092176 289422.9591759747 343172.84122568683 335591.57745767554 344696.7236184939 299079.9785353084 322791.6001301659 273889.6936036363 251614.81903077266 274019.6354069227 1.0297168819376996 1.056212481803276 1.2523658777812425 1.2246990145772498 1.257927093825283 1.0914545524855208 1.1779871163276903 0.999525793824616 0.9182364565120357 1.0 18.06391975043 1.6478114688707761 3.9585876175609114 0.9587657701035646 1.159988504136226 0.5469844998414577 0.07669528130267948 0.13764043223217423 5.040974689140872 0.04742625940399824 0.021593323030569454 44.44382909380252 -1.6478114688707761 0.20122273403266133 SYDPPCPGHWTPEAPGSGTTCPGLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYDPPCPGHWTPEAPGSGTTCPGLPR 26 0 H3BM67;H3BUP2;H3BUN4;O60936;O60936-3;J3QLT7 H3BM67 NOL3 Nucleolar protein 3 0 132.39 5.5885e-05 343350000.0 95302.0 114460.0 106990.0 131210.0 108990.0 122250.0 123600.0 79299.0 113690.0 111840.0 False True 94788.9046210475 118269.73190746887 122053.26202624895 147821.17254673556 122869.23046565839 113799.14524554591 117620.99580214763 85216.69405216297 85672.62286794996 104702.27544895874 0.9053184776987593 1.1295812951565138 1.1657173781839023 1.4118238778754797 1.1735106036502125 1.0868832101077097 1.1233852874523882 0.8138953397789833 0.8182498661140795 1.0 16.675933270509322 1.7932794763926703 5.369966279453958 0.8623923368449143 1.1540769349759206 0.4805344444307956 0.12564030541808088 0.16765557129878644 9.223095942940592 0.06254362882831495 0.034951317948063054 62.12687033216316 -1.7932794763926703 0.2916845981310062 SYDQVHSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYDQVHSGK 9 0 Q15067-2;Q15067;Q15067-3 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 ; 140.49 0.00010899 780200000.0 1665930.0 1941570.0 1785270.0 1754910.0 1750310.0 1906590.0 2211700.0 1916550.0 2455200.0 1818500.0 False True 1656960.8179822234 2006193.9837461484 2036620.4981549825 1977081.4260650235 1973201.6035998375 1774791.920930104 2104711.6214855174 2059572.6930437079 1850148.8579944659 1702441.7731038202 0.9732848689217266 1.1784214975461629 1.1962937765806239 1.161321025658629 1.159042050526274 1.0424978692189737 1.2362899305791208 1.209775703100131 1.0867619011846452 1.0 20.699174025364226 4.743267409808536 24.631272316885504 1.1543894173011573 0.9732847781756487 0.30934022611499223 0.07287512551818238 432.8183442962137 2264899.8322531 0.016648280622191054 0.13480321557421945 55369.0930519552 -4.743267409808536 -0.18110463912550856 SYDSLHRPK ddPTM_BT-474_Trastuzumab_2h_R1 3 SYDSLHRPK 9 1 Q8N8S7 Q8N8S7 ENAH Protein enabled homolog 0 ;; 138.98 7.3006e-05 416530000.0 611360.0 664970.0 688270.0 637410.0 692380.0 919490.0 725280.0 609950.0 893780.0 782530.0 False True 608068.5056884809 687103.1244671462 785172.4334499162 718106.0406448796 780550.4889422199 855927.8205466408 690195.4355613408 655467.5662633424 673519.8950384064 732588.2654423612 0.8300276354021434 0.9379117259710001 1.0717786108351093 0.9802314267363581 1.0654695492165678 1.168361357835568 0.9421328024474672 0.8947284541440876 0.9193703022689185 1.0 19.482643066660327 4.604624733591749 3.4617441585935707 0.999974449015973 0.8286776113665192 0.3244454010670419 0.07720927598453958 0.34967493283659384 6.813751069173443 0.021276557781312173 0.12349300937375761 40236.92037465725 -4.604624733591749 -0.1712968376494538 SYDVPPPPMEPDHPFYSNISK ddPTM_BT-474_Trastuzumab_2h_R1 4 SYDVPPPPMEPDHPFYSNISK 21 0 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 0 ;;; 266.14 5.7121e-37 3351050000.0 2849650.0 2764500.0 2692880.0 2511350.0 2418960.0 3479730.0 3353510.0 2763610.0 3648870.0 3202080.0 False True 2834307.8010258786 2856514.711324458 3072014.0970674455 2829286.6525054816 2727000.2177007897 3239184.4555033403 3191287.9096477414 2969844.6115272297 2749654.880852995 2997720.512961392 0.9454876759761434 0.95289560817081 1.0247833591506703 0.9438126870975314 0.9096912823960488 1.0805491844546278 1.0645715288831672 0.9907009671803513 0.9172485790333611 1.0 21.51543445182259 2.751118391229041 24.999300642829287 1.012934474876424 0.9584168646167817 0.23782253354855742 0.04923939768886236 1256.862711586356 2502088.877462809 0.015964246995493682 0.016832141169118815 563.7913277096102 -2.751118391229041 -0.0545176102596423 SYEALVQHVIEDHER ddPTM_BT-474_Trastuzumab_2h_R1 6 SYEALVQHVIEDHER 15 0 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 0 ;;;;; 268.2 8.261399999999999e-26 2064031000.0 998582.0 1147760.0 1086046.0 1168499.0 1039747.0 1176504.0 1180976.0 693734.0 1260494.0 1074557.0 False True 993205.7454648893 1185962.4977644284 1238951.8367189427 1316430.8535910973 1172152.6173867027 1095175.0476725192 1123847.6791135708 745503.9537898739 949862.1434542512 1005977.852285469 0.9873037892518579 1.178915117335888 1.2315895761563567 1.3086081871487667 1.1651872998234536 1.0886671562245671 1.1171694054300647 0.7410739233435134 0.9442177492240718 1.0 19.94016711229102 1.8822231825350928 6.004894923830282 0.8746878590829215 1.1656892243794899 0.5809696487940903 0.10067946856605925 0.15016496902885412 6.744631373742357 0.04553845197175883 0.027533013225986405 76.24707406194145 -1.8822231825350928 0.2910013652965684 SYEDMIGEEVPSDQYYWAPLAQHER ddPTM_BT-474_Trastuzumab_2h_R1 4 SYEDMIGEEVPSDQYYWAPLAQHER 25 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 0 ;;; 158.2 2.5133000000000004e-11 517990000.0 248846.0 379847.0 354363.0 335038.0 404569.0 459349.0 441418.0 331620.0 375765.0 386666.0 False True 247506.24078538976 392489.9777726398 404254.23022158793 377453.77644777973 456088.46408166754 427595.2848212371 420064.92495948577 356367.1683322393 283162.75074303144 361988.64483858284 0.6837403446612453 1.0842604688543698 1.1167594232185158 1.0427226981556095 1.2599524062006018 1.1812394972000004 1.1604367455968134 0.9844705722499936 0.7822420807406784 1.0 18.465584916795002 1.5028946607625269 5.171555560293705 0.8872977706675372 1.0867358776867106 0.18755454764462431 0.15287232105291965 0.2323824347982291 13.79532594225963 0.09166817857085188 0.03928526230698827 31.83425280130703 -1.5028946607625269 0.19943810701917342 SYELPDGQVITIGNER ddPTM_BT-474_Trastuzumab_2h_R1 14 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;A0A2R8YEA7;Q562R1;Q9BYX7;P63261;P68133;P68032;P63267;P62736;Q6S8J3;A5A3E0 P60709;P63261;P68133;Q6S8J3 ACTB;ACTG2;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;POTEE;POTEF Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F 0 ;;;;;;;;;;;;; 318.46 1.402799999999999e-57 56517871000.0 2766490.0 3262805.0 2975343.0 3133719.0 2911001.0 3077631.0 3063429.0 2662343.0 3373214.0 3153546.0 False True 2751595.525225935 3371405.4920177255 3394245.43225503 3530447.504092553 3281699.7224952867 2864881.6129341056 2915239.2358347727 2861020.5537638227 2541930.608451834 2952283.994393439 0.9320226409286426 1.1419651694824153 1.1497015323393351 1.195836007239507 1.1115799593560198 0.9703949953238524 0.9874521697001316 0.9690871742681493 0.8610047723318995 1.0 21.49340007717102 2.7257531511952027 4.9073058346742835 0.9581363064443943 1.1163065811524346 0.5028918700619405 0.07365003274990901 0.1561654970828989 11.15430595413778 0.023970952693576193 0.023618652610218182 531.8058999892852 -2.7257531511952027 0.15817027470804035 SYENQKPPFDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYENQKPPFDAK 12 1 E7EMD0;P16435;H0Y4R2 E7EMD0;P16435 POR NADPH--cytochrome P450 reductase 0 ; 90.731 0.0045918 241060000.0 389510.0 437980.0 436930.0 331330.0 464020.0 607020.0 491580.0 418170.0 685470.0 529020.0 False True 387412.92143862945 452557.8995354995 498445.9461363581 373276.34402796975 523110.19653798314 565058.1361713802 467800.3973820372 449375.9688242339 516545.1033274139 495257.49068319105 0.7822454555996848 0.9137830483113161 1.0064379752212707 0.7537015614101013 1.056238838137249 1.1409380913994889 0.9445599636195755 0.9073582475336918 1.0429829190768165 1.0 18.91781927022753 6.016721928041322 0.6156742718978411 0.9886292726574453 1.9831146030959406e-14 0.2970874586987774 0.09620661434459549 21.127767558927527 1.798547146588692 0.042540012848644206 21.035149500122614 1039254.534344376 -6.016721928041322 -0.9886292726574254 SYETLVDFDNHLDDIR ddPTM_BT-474_Trastuzumab_2h_R1 5 SYETLVDFDNHLDDIR 16 0 M0R1B0;O43402 M0R1B0 EMC8 ER membrane protein complex subunit 8 0 ;;;; 266.17 3.6528e-27 2518996000.0 1522584.0 2205155.0 1906228.0 2086590.0 2289260.0 2041079.0 2019423.0 1916863.0 2287492.0 1999311.0 False True 1514386.5769189857 2278552.2511306526 2174608.3331692014 2350752.0800571097 2580783.691492916 1899984.0129131544 1921735.7945449862 2059909.0506930884 1723770.247422401 1871713.2602837346 0.8090911193787336 1.2173618146965763 1.1618277111738529 1.2559360079015294 1.378834967008618 1.0151042113283604 1.026725532870173 1.1005473404515096 0.9209585057708536 1.0 20.83592800549974 SYGPAPGAGHVQEESNLSLQALESR ddPTM_BT-474_Trastuzumab_2h_R1 2 SYGPAPGAGHVQEESNLSLQALESR 25 0 Q13155 Q13155 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 0 ; 395.49 1.1797999999999995e-138 1243800000.0 520940.0 612910.0 596810.0 647000.0 670190.0 691430.0 646390.0 592940.0 661910.0 648160.0 False True 518135.31692187564 633310.3388380804 680835.660434486 728910.1336615955 755534.723972654 643633.0715511469 615121.6462504071 637188.1936883127 498791.14963958785 606793.8738823059 0.8538901581303265 1.0436992957528073 1.1220213152094896 1.2012483398983282 1.2451258268952101 1.0607112221373323 1.0137242195851774 1.050090024165112 0.8220108526282414 1.0 19.210846994820322 1.4347456091285566 3.5479120132135122 0.912126752634057 1.0862039953044131 0.25369024723748335 0.10919968535142656 0.30714139589592765 6.961153654896347 0.08499372522938588 0.029703109644690254 27.211069347425706 -1.4347456091285566 0.17407724267035618 SYHEEFNPPKEPMKDDITGEPLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 SYHEEFNPPKEPMKDDITGEPLIR 24 2 F8W1A4;P54819-2;P54819;P54819-6;P54819-3;P54819-5;F8VY04;A0A5K1VW67;P54819-4 F8W1A4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed 0 ;; 200.17 9.3785e-25 664280000.0 570170.0 600796.0 725940.0 582272.0 702700.0 1033670.0 820620.0 612622.0 1004030.0 792670.0 False True 567100.268071842 620793.1316711482 828146.0420164063 655987.5754983063 792184.679770786 962214.8258974494 780923.4755271723 658338.9644714835 756600.259812717 742081.12196107 0.7642025262321556 0.8365569656732427 1.1159777785855753 0.8839836455679569 1.0675176289046528 1.2966437191592213 1.0523424628610079 0.8871522869787009 1.0195654321636398 1.0 19.50121738076241 4.363973579888288 5.276967960713685 1.0333464090976439 0.7818382584367533 0.4310467420978673 0.11112907620506395 0.1963284311277946 8.059709327803802 0.02947850130528278 0.08495496044399789 23119.241410202758 -4.363973579888288 -0.2515081506608906 SYIEGYVPSQADVAVFEAVSS(ph)PPPADLCHALR ddPTM_BT-474_Trastuzumab_2h_R1 3 SYIEGYVPSQADVAVFEAVSSPPPADLCHALR 32 0 P24534;C9JZW3;F2Z2G2 P24534 EEF1B2 Elongation factor 1-beta 1 SYIEGYVPSQADVAVFEAVS(0.103)S(0.897)PPPADLCHALR;SYIEGYVPSQADVAVFEAVS(0.263)S(0.737)PPPADLCHALR;SYIEGYVPSQADVAVFEAVS(0.069)S(0.931)PPPADLCHALR 125.43 8.6892e-08 378370000.0 376213.0 405647.0 370162.0 421826.0 394938.0 408367.0 395807.0 379974.0 494408.0 432820.0 True False 374187.51100919367 419148.71517621045 422277.5920942185 475229.1283492061 445231.0133190762 380137.55048251763 376660.30328042636 408329.5893488765 372567.77312778134 405197.05704415514 0.9234704559278616 1.0344317854473828 1.0421536503119322 1.1728346000731675 1.0988012019804934 0.9381547666104921 0.9295731465280137 1.007730886121367 0.919473048115406 1.0 18.628264170285583 2.7325379441332958 24.925437874259632 0.96102680216209 1.059138618077664 0.3567205435144125 0.06383104727920773 562.0629358235437 2326148.3793392004 0.021610510672537966 0.020880289283499855 540.1793079507177 -2.7325379441332958 0.09811181591557405 SYIYSGSHDGHINYWDSETGENDSFAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYIYSGSHDGHINYWDSETGENDSFAGK 28 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ; 167.78 3.1085e-12 1370530000.0 341081.0 469490.0 488880.0 542990.0 522640.0 621750.0 601640.0 121368.0 616460.0 433520.0 False True 339244.65779366123 485116.69083730207 557710.0545788639 611732.4783259811 589195.106070021 578769.8859420711 572536.3747120075 130425.0964542165 464541.6931407902 405852.3824448549 0.8358818931899606 1.1953032970139512 1.374169719589222 1.5072782735459243 1.4517473139388994 1.4260600922324544 1.410701031895016 0.3213609235666813 1.1446075303103826 1.0 18.630595556919914 1.763960611109242 24.999999999995115 0.7585414378164427 1.3291536192619622 0.4062302627786313 0.26917169666609364 13.00610624995633 12809.898354703604 0.12302778401235484 0.06822948772928808 58.07117467418904 -1.763960611109242 0.5706121814455195 SYLFNIMDTPGHVNFSDEVTAGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYLFNIMDTPGHVNFSDEVTAGLR 24 0 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 217.7 1.2289e-32 230580000.0 394570.0 498870.0 515770.0 496830.0 480430.0 583830.0 511180.0 480870.0 648900.0 586630.0 False True 392445.67896084784 515474.5863767166 588385.9328467938 559728.6270588727 541609.9127682925 543471.2062879923 486452.27050276595 516754.9612083825 488987.28981451946 549190.7711607894 0.7145889908735366 0.9386075175429313 1.0713689372513673 1.019187969739204 0.9861963113901682 0.9895854679773514 0.885761917438239 0.9409389020069485 0.8903778349752278 1.0 19.066947856454178 4.72451591465358 4.4089137376315914 0.9694290326823956 0.6995572533940095 0.6731617778256624 0.053570348625666044 0.11813512663258062 5.588745829738305 0.014050025725197922 0.09702291769244112 53029.30247783848 -4.72451591465358 -0.269871779288386 SYLMTNYESAPPS(ph)PQYK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYLMTNYESAPPSPQYK 17 0 O75223;M0QZK8;B8ZZK2;H7BZK5 O75223 GGCT Gamma-glutamylcyclotransferase 1 SYLMTNYESAPPS(1)PQYK;SYLMTNYESAPPS(1)PQYK 243.16 2.0179e-20 123032000.0 314650.0 253640.0 273670.0 251370.0 247340.0 310880.0 317630.0 294610.0 367920.0 296130.0 True False 312955.95936090115 262082.2540713819 312200.35721771716 283193.4162264532 278837.2829009624 289389.59733280423 302265.02343556774 316595.29419926734 277251.045875417 277230.7298703517 1.1288646085780483 0.9453578764300262 1.1261390732683898 1.0215080282005173 1.005795003430399 1.0438582961857754 1.0903012937163332 1.1419920668510475 1.0000732819376656 1.0 18.080727657504877 2.262354076315744 14.939193835915848 1.0783724872715246 1.0415142782809812 0.0 0.06494756346189401 7.453562812181923 4677.053692116552 0.021530329915585764 0.01793230189214631 182.95912572487842 -2.262354076315744 -0.03685820899054337 SYLTPVRDEESESQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SYLTPVRDEESESQR 15 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4;F8VZN8;H0YHI8;H0YIS4;A0A3B3ISH4 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 ; 159.41 1.6117e-06 1067960000.0 248850.0 289750.0 256330.0 282370.0 286500.0 297880.0 268760.0 248520.0 314020.0 278570.0 False True 247510.21924983434 299394.1535924263 292419.0359396994 318118.01304795156 322984.07678145805 277288.25673409563 255759.05203709716 267065.8243589896 236633.97865242008 260791.42410422442 0.9490734601415333 1.1480214681935799 1.1212755056808734 1.2198177687039922 1.2384766021001463 1.0632568064173702 0.9807034603058262 1.024059074320855 0.9073687122389811 1.0 17.992536903032903 2.4481411095106105 4.4386886142659945 0.9864480995401176 1.1412475923572483 0.4701196669436608 0.07820355529110412 0.18636756698239157 8.669267480139183 0.028236880024828142 0.024037527348026944 280.634531816892 -2.4481411095106105 0.15479949281713068 SYLYLSPSGNSS(ph)PPGS(ph)PTLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYLYLSPSGNSSPPGSPTLQK 21 0 H0YC42;P55327-8 H0YC42 2 SYLYLSPS(0.001)GNS(0.2)S(0.801)PPGS(0.939)PT(0.059)LQK;SYLYLSPSGNS(0.011)S(0.989)PPGS(0.986)PT(0.014)LQK 151.05 3.4643e-08 468090000.0 585040.0 516900.0 495470.0 503630.0 460080.0 567300.0 580160.0 522050.0 699540.0 602580.0 True False 581890.2096440548 534104.7040273517 565227.8692975573 567389.5063616525 518668.4608921918 528083.8862805576 552095.4443735769 561008.0219161866 527147.7403557549 564122.8285053063 1.0314955896853613 0.9467879636115946 1.0019588655810632 1.00579072090559 0.919424697395158 0.9361150791925279 0.9786794940321827 0.994478495760626 0.9344556073940135 1.0 19.10564979447656 4.752958722675343 23.520765594691312 0.9697228718770622 1.0314956885975592 0.2743468542886648 0.030625147302876958 1563.6640875245716 2554302.4678763356 0.007437017019401996 0.15023178629238096 56618.54736359273 -4.752958722675343 0.06177281672049706 SYMNPGDQS(ph)PADSNK ddPTM_BT-474_Trastuzumab_2h_R1 8 SYMNPGDQSPADSNK 15 0 Q92754;Q92754-2 Q92754 TFAP2C Transcription factor AP-2 gamma 1 SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK;SYMNPGDQS(1)PADSNK 456.56 2.749299999999998e-176 6278910000.0 5400620.0 5217770.0 4923460.0 4602470.0 5072720.0 7031080.0 6590010.0 6348730.0 8873500.0 6296910.0 True False 5371543.661985293 5391440.3202414345 5616640.372518517 5185142.230098118 5718700.823632935 6545037.988982022 6271226.040017089 6822504.47079771 6686744.823808209 5895035.812744127 0.9111977997441293 0.9145729545164087 0.9527745972935799 0.8795777319772456 0.970087545739759 1.1102626340000674 1.0638147484125031 1.1573304535400013 1.1343009671548616 1.0 22.491069147026483 2.845944307117342 3.2797000375634644 1.1057576411452368 0.9174141168260116 0.7851286414689077 0.044206429813734995 0.10355109543269492 2.1060955956786604 0.013701812839793546 0.014585612074077537 701.3653512424451 -2.845944307117342 -0.1883435243192252 SYNPFDDDGEDEGARPAPWR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYNPFDDDGEDEGARPAPWR 20 1 O95721 O95721 SNAP29 Synaptosomal-associated protein 29 0 92.932 0.001443 245560000.0 72883.0 63692.0 59966.0 55211.0 63271.0 57258.0 63818.0 43458.0 85654.0 67670.0 False True 72490.60602606258 65811.94971737296 68408.69156618416 62200.70693908866 71328.1868134017 53299.88923083405 60730.87953156522 46701.05663525258 64545.71940479722 63351.24266479831 1.1442649421988789 1.0388422854717254 1.079831881564591 0.9818387820457237 1.1259161432840503 0.8413392853689138 0.9586375416959403 0.7371766467526997 1.0188548273049525 1.0 15.951085298343454 2.7359038721319076 24.999999999562505 0.8860512651218523 1.0673663937453783 0.4477492599996328 0.08813520137534656 190.47775570075856 1792390.3105203402 0.026894202219331885 0.026421975719987896 544.3821445489639 -2.7359038721319076 0.18131512862352606 SYQFGIIGNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYQFGIIGNDR 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 141.71 8.840000000000001e-05 200770000.0 129260.0 160930.0 140500.0 158890.0 125090.0 137400.0 152820.0 115380.0 182230.0 148440.0 False True 128564.07852213617 166286.45776576054 160281.1787521077 179005.45770864116 141019.4700334818 127901.86140480962 145427.5127709078 123990.24148776848 137321.85825689614 138966.43211412238 0.9251448466098378 1.1965944238188568 1.1533805417158667 1.288120123582347 1.0147736247389112 0.9203795438870713 1.0464938227058995 0.8922315957996596 0.9881656754641605 1.0 17.084376910831413 3.0170184677080067 24.243152304025077 0.9638642310397137 1.1464118730492316 0.4297274848041396 0.09346300437618385 145.60245964435177 207411.52477086094 0.02622259063155815 0.03133420882270121 1039.9643877823864 -3.0170184677080067 0.1825476420095179 SYQLRPGTMIEWGNYWAR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYQLRPGTMIEWGNYWAR 18 1 O75323;O75323-2;C9K068 O75323 GBAS Protein NipSnap homolog 2 0 173.21 8.0983e-12 380560000.0 161640.0 163180.0 198190.0 139550.0 194690.0 262860.0 176160.0 149030.0 203920.0 162130.0 False True 160769.74819989232 168611.34765560678 226093.42930163848 157217.01569161616 219482.61748196185 244689.1069058831 167638.46780344954 160151.37535900623 153666.6483880058 151782.7245935235 1.0592097923557255 1.1108731122540498 1.4895860507651328 1.0358030936171805 1.4460316091290342 1.6121011634305835 1.1044634246248244 1.0551357263344303 1.0124119777104243 1.0 17.2116480717677 2.01921649191114 24.898934774189197 1.0414313429647166 1.2941530670534716 0.3231216030470493 0.1790623403879873 284.2713817610511 368330.72476786975 0.0691067017636658 0.05103118241750476 104.52411327216329 -2.01921649191114 0.25272172408875493 SYQNS(ph)PS(ph)SDDGIRPLPEYSTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 SYQNS(0.996)PS(0.561)S(0.443)DDGIRPLPEYSTEK;SYQNS(0.996)PS(0.89)S(0.113)DDGIRPLPEYSTEK;SYQNS(0.999)PS(0.577)S(0.424)DDGIRPLPEYSTEK;SYQNS(1)PS(0.564)S(0.436)DDGIRPLPEYSTEK 247.74 2.4833e-31 4186040000.0 1873540.0 1779370.0 1579460.0 1659380.0 1698470.0 2010930.0 2033840.0 1954100.0 2535620.0 2260730.0 True False 1863453.0688098643 1838595.2547981197 1801834.239087572 1869457.3378599344 1914760.086879591 1871919.1423200448 1935455.3891766998 2099924.864718741 1910750.4265672597 2116448.275891668 0.8804623718124102 0.8687173108558546 0.851348109761129 0.8832993270635563 0.9047044091228239 0.8844625043016455 0.914482726189604 0.9921928584973493 0.9028098859454776 1.0 21.013213800231192 2.0004595348609517 0.5917824784964769 0.9881498286990557 0.8639151227178158 0.6738520010813607 0.026972719518664184 0.4343366832596056 0.3097134269487758 0.024977038239275728 0.0162341001121354 100.10586781250166 -2.0004595348609517 -0.12423470598123987 SYQNS(ph)PSS(ph)DDGIRPLPEYSTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 SYQNS(1)PS(0.233)S(0.767)DDGIRPLPEYSTEK 250.24 8.7362e-32 1569600000.0 905030.0 814690.0 723020.0 805730.0 798690.0 1015300.0 988030.0 969070.0 1192400.0 1041200.0 True False 900157.4190382854 841806.4641594954 824814.9313974999 907735.3353866425 900398.4372934824 945114.7007591216 940235.2142588664 1041386.9242377513 898548.9973413981 974749.7245838328 0.9234754279336735 0.8636129284559714 0.846181240779168 0.9312496454145684 0.923722689614409 0.9695972996172286 0.9645914131038075 1.068363394185486 0.9218253410895105 1.0 19.89467231642536 2.874492132708033 1.1466808705660907 1.0028239714950782 0.8794682932462808 0.5522280696568392 0.04077131749993107 0.31595386885809196 0.8757504226875709 0.0187587053851753 0.020050245535488884 749.0177898487989 -2.874492132708033 -0.12335567824879734 SYQNS(ph)PSSDDGIRPLPEYSTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 SYQNS(0.333)PS(0.333)S(0.333)DDGIRPLPEYSTEK 178.53 3.6313e-17 349570000.0 337310.0 312500.0 287700.0 283130.0 298360.0 340410.0 355590.0 325780.0 409150.0 351370.0 True False 335493.9604386639 322901.3735897607 328205.65926677146 318974.22897002724 336354.3774817303 316878.2579389472 338388.7532142854 350091.35787732067 308320.464829112 328945.2657770083 1.0199081590251398 0.9816264503063413 0.9977515818369058 0.9696878543503938 1.0225238435556163 0.9633160616871703 1.0287083853144092 1.0642845308941071 0.9373002043389254 1.0 18.32748802386447 2.2056946371846724 24.99810911411451 1.0189960684690589 0.992546850629891 0.002066332358773515 0.03514401958290446 428.8112496516147 326154.35210268927 0.012879021030781462 0.009512581514390443 160.58117713950497 -2.2056946371846724 -0.02644921783916787 SYQNSPS(ph)SDDGIRPLPEYSTEK ddPTM_BT-474_Trastuzumab_2h_R1 4 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 SYQNS(0.057)PS(0.472)S(0.472)DDGIRPLPEYSTEK;SYQNS(0.024)PS(0.633)S(0.344)DDGIRPLPEYSTEK;S(0.001)YQNS(0.021)PS(0.489)S(0.489)DDGIRPLPEYSTEK;SYQNS(0.051)PS(0.475)S(0.475)DDGIRPLPEYSTEK 237.38 9.7267e-31 3119000000.0 2540125.0 2273952.0 2298767.0 2151238.0 2212673.0 2594209.0 2694900.0 2552420.0 3401003.0 2729705.0 True False 2526449.2492344193 2349639.117686989 2622413.412359047 2423584.5102285985 2494443.791009631 2414877.437941119 2564537.3914822633 2742894.541326139 2562871.3817553557 2555492.889881972 0.9886348184483134 0.9194465486442849 1.0261869335430496 0.9483824117939667 0.9761106363809289 0.944975213001924 1.0035392395870484 1.0733328792211283 1.0028873067511153 1.0 21.285170146674314 2.0097448120922925 7.539134225472121 1.0348373564628455 0.9677801979391517 0.3828734482962419 0.03296402010951797 0.11099579001720056 39.66357219567284 0.011973068422482238 0.008501912451410383 102.26918902542386 -2.0097448120922925 -0.06705715852369376 SYQNSPSS(ph)DDGIRPLPEYSTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 SYQNS(0.023)PS(0.2)S(0.777)DDGIRPLPEYSTEK 238.98 8.629999999999997e-31 1306300000.0 1229700.0 1242200.0 1131600.0 1084300.0 1129000.0 1359900.0 1324300.0 1352300.0 1552400.0 1369300.0 True False 1223079.431832513 1283545.8760742443 1290919.4439564783 1221572.2688242153 1272771.457892726 1265893.313860269 1260238.5496827203 1453215.4928402626 1169831.8210942526 1281910.101683291 0.9541070237503186 1.0012760445438456 1.0070280609079818 0.9529313071331248 0.9928710728009984 0.9875055295983782 0.9830943277753148 1.1336329208514924 0.9125693132132534 1.0 20.28986366091946 SYS(ph)EPEKMNEVGIVEEAEPAPLGPQR ddPTM_BT-474_Trastuzumab_2h_R1 2 SYSEPEKMNEVGIVEEAEPAPLGPQR 26 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 S(0.02)YS(0.98)EPEKMNEVGIVEEAEPAPLGPQR;S(0.002)YS(0.998)EPEKMNEVGIVEEAEPAPLGPQR 234.07 4.2542e-45 259980000.0 415730.0 180914.0 166676.0 193457.0 121279.0 176372.0 161664.0 209070.0 414260.0 273380.0 True False 413491.7558719448 186935.61312517748 190142.53202623705 217948.6363644071 136723.16177304872 164179.81877502988 153843.6947035469 224671.8650359486 312171.1737996038 255932.65434760653 1.6156271927314998 0.7304093868040864 0.7429397101004015 0.85158588660746 0.5342153861591729 0.6414961748180895 0.6011100658323855 0.8778554093015436 1.2197395232560453 1.0 17.965404706455974 4.740574452885477 24.731811348576386 0.7783704415056698 1.615627524973881 0.6148416408407821 0.19300445809648917 101.55647989361265 1247105.0548526435 0.046477359204481844 0.3042160255152538 55026.824716912066 -4.740574452885477 0.8372570834682111 SYS(ph)FDEIRK ddPTM_BT-474_Trastuzumab_2h_R1 5 SYSFDEIRK 9 1 P43490 P43490 NAMPT Nicotinamide phosphoribosyltransferase 1 S(0.159)YS(0.841)FDEIRK;S(0.038)YS(0.962)FDEIRK;S(0.015)YS(0.985)FDEIRK;S(0.158)YS(0.842)FDEIRK;S(0.023)YS(0.977)FDEIRK 148.18 5.5506000000000014e-05 2766570000.0 2600650.0 3240180.0 2485070.0 2778980.0 2033870.0 2723330.0 3458740.0 2819300.0 3289060.0 3203790.0 True False 2586648.3893593797 3348027.4325698307 2834946.255384346 3130798.583064764 2292871.2888080394 2535072.607129262 3291427.5325300987 3029690.482115322 2478515.234146006 2999321.379297383 0.862411213154265 1.1162616502784157 0.945195894962232 1.0438356505157778 0.7644633564893817 0.8452153959317039 1.0973907482035632 1.010125324690965 0.826358672749707 1.0 21.516204685554623 SYS(ph)HDVLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSHDVLPK 9 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 S(0.443)YS(0.556)HDVLPK 77.64 0.020630000000000003 465920000.0 844170.0 863290.0 755280.0 746940.0 849430.0 1074500.0 924130.0 842670.0 1325000.0 982080.0 True False 839625.0825161043 892024.0857801741 861616.8589885549 841502.527414516 957599.8755339407 1000222.3441009314 879426.3013805718 905554.3143915584 998471.5040903656 919402.8135990106 0.913228750333474 0.9702211833443687 0.9371483818020395 0.915270776821366 1.041545513424532 1.0879043758693234 0.9565190451593787 0.9849375061696384 1.086000052775388 1.0 19.81033755560037 3.238277684455546 24.999999774659724 1.0207157401393863 0.936784053882747 0.540272061575056 0.04144457595650429 6.789765437681165 599971.3984808328 0.01240371719376897 0.015721854769165346 1730.9227437777727 -3.238277684455546 -0.08393168625663927 SYS(ph)LDLDGQHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSLDLDGQHFR 12 0 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 S(0.148)YS(0.852)LDLDGQHFR 98.676 0.0027213000000000003 162250000.0 104620.0 93977.0 73657.0 101810.0 79148.0 78302.0 60969.0 68630.0 100720.0 79620.0 True False 104056.73754437479 97104.96763470388 84027.265361879 114699.13556118541 89227.02865304997 72889.16704308166 58019.69654580212 73751.51909607855 75898.9055788542 74538.58343388855 1.3960117398349428 1.3027476933584392 1.1272989301762941 1.5387887759218952 1.1970582823349365 0.9778716429153792 0.7783847488497319 0.9894408465850699 1.0182499060526442 1.0 16.185699781225235 2.829073437283085 3.4451004218100505 0.9386059058247195 1.3264452559923539 0.7171049315430128 0.11507168598878693 0.13022894401951474 2.9421730364906327 0.036398718067861255 0.038470734935011755 674.6420970590054 -2.829073437283085 0.3878393501676344 SYS(ph)LSELSVLQAK ddPTM_BT-474_Trastuzumab_2h_R1 6 SYSLSELSVLQAK 13 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 SYS(1)LSELSVLQAK;SYS(0.969)LS(0.031)ELSVLQAK;SYS(0.99)LS(0.01)ELSVLQAK;SYS(1)LSELSVLQAK;SYS(0.893)LS(0.107)ELSVLQAK;SYS(0.887)LS(0.113)ELSVLQAK 402.1 3.491699999999998e-126 3176810000.0 3152710.0 2642680.0 2549750.0 2566570.0 2320770.0 3002460.0 3002190.0 2927670.0 4276070.0 3105690.0 True False 3135736.1596590104 2730640.0062662084 2908732.6371757034 2891497.4988436527 2616306.303218515 2794907.0072306083 2856962.600220471 3146147.6018070304 3222289.8449024125 2907482.205285019 1.0785057098403172 0.9391768593811652 1.0004300737897593 0.9945022169310924 0.8998529031279282 0.9612808642990904 0.9826242771244768 1.0820866232949533 1.1082750013207847 1.0 21.471338931297606 1.7685961299950619 5.809624867778589 1.0709704388157264 0.9751933886129929 0.36299065392655006 0.0504571465639383 0.16738627941061035 13.366868381717 0.023750770222899276 0.0128899888196716 58.69432736637971 -1.7685961299950619 -0.09577705020273353 SYS(ph)PAHNR ddPTM_BT-474_Trastuzumab_2h_R1 2 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.029)YS(0.971)PAHNR;S(0.168)YS(0.832)PAHNR 105.4 0.0028314 351848000.0 176633.0 283635.0 253357.0 284871.0 296873.0 218629.0 272493.0 228327.0 216835.0 243958.0 True False 175682.0275537711 293075.61951402196 289027.4633814785 320935.6393915186 334678.01684587036 203515.69182730812 259311.4725656525 245365.9201610132 163398.91969013936 228388.3915770479 0.7692248556972036 1.2832334318320706 1.2655085549038236 1.4052187029972119 1.465389788574106 0.8910947286856791 1.1353969033849627 1.0743362150183444 0.7154431911440471 1.0 17.8011297983432 2.7221264073681417 24.94693454695255 0.9909860549032631 1.2510937184755595 0.30572354336231566 0.20418150250861733 1087.0525065301283 1650130.7034010175 0.06709220817940914 0.06341690502853432 527.3833412435093 -2.7221264073681417 0.2601076635722964 SYS(ph)PDGK ddPTM_BT-474_Trastuzumab_2h_R1 8 SYSPDGK 7 0 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 SYS(1)PDGK;S(0.367)Y(0.001)S(0.631)PDGK;S(0.001)YS(0.999)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;S(0.001)YS(0.999)PDGK;S(0.001)YS(0.999)PDGK 140.11 0.0027759 56546130000.0 23666342.0 20719568.0 18351360.0 17907663.0 17595995.0 18399338.0 22261105.0 22429585.0 29725963.0 21226780.0 True False 23538925.044249803 21409206.29563667 20935071.975119393 20174771.29968593 19836740.66361656 17127435.071442854 21184250.305470627 24103394.527824856 22400397.72614686 19872068.727239363 1.1845231297929313 1.0773516632563924 1.0534923294836904 1.0152325646917495 0.9982222251690194 0.8618848548951352 1.0660314533047386 1.2129282994470254 1.1272302865701054 1.0 24.244238732429466 -0.5972635864164806 7.3846948832339825 0.9999849301849058 1.0674511662746844 0.04269051604659724 0.09408230754531348 0.0 0.0 0.10147854989847538 0.0239187235927298 0.25277633549826084 0.5972635864164806 0.06746623608977864 SYS(ph)PDGKES(ph)PSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSPDGKESPSDK 13 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 2 S(0.002)Y(0.001)S(0.997)PDGKES(0.969)PS(0.031)DK 151.39 2.544e-05 668990000.0 1041200.0 639470.0 481180.0 500610.0 524940.0 874160.0 900440.0 805990.0 1391900.0 803120.0 True False 1035594.2948881956 660754.3723822228 548925.9615084636 563987.1746713009 591787.9974368538 813731.3767512994 856882.2771851617 866137.066534292 1048884.89550444 751864.1940143752 1.3773688162471474 0.8788214382896781 0.7300865846232444 0.7501184112253626 0.7870942680182202 1.0822850499191896 1.1396769310293537 1.1519860547019638 1.395045679598337 1.0 19.520112572090245 2.530852724516421 3.75952805330974 1.1755818884564275 0.885715309930883 0.2964856014658973 0.19393286002231633 0.28446081875819557 8.136193291013267 0.06840414291809904 0.06171173376325445 339.51012031860256 -2.530852724516421 -0.28986657852554454 SYS(ph)PDGKES(ph)PSDKK ddPTM_BT-474_Trastuzumab_2h_R1 7 SYSPDGKESPSDKK 14 2 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 2 S(0.038)YS(0.961)PDGKES(0.603)PS(0.397)DKK;S(0.058)Y(0.004)S(0.938)PDGKES(0.999)PS(0.001)DKK;S(0.115)Y(0.001)S(0.884)PDGKES(0.905)PS(0.095)DKK;S(0.088)Y(0.002)S(0.91)PDGKES(0.926)PS(0.074)DKK;S(0.121)Y(0.018)S(0.862)PDGKES(0.879)PS(0.121)DKK;S(0.003)YS(0.997)PDGKES(0.929)PS(0.071)DKK;S(0.368)Y(0.023)S(0.608)PDGKES(0.934)PS(0.066)DKK 141.18 4.7924e-05 20706700000.0 8548610.0 4344210.0 3425000.0 3380870.0 3553580.0 6922760.0 7017490.0 6273910.0 13171930.0 6095060.0 True False 8502585.233599849 4488804.403719602 3907210.229366323 3808887.7953515863 4006107.3492811606 6444205.895624164 6678027.199284902 6742101.022469447 9925884.346319275 5706068.052556607 1.4900953082377384 0.7866720765288439 0.6847465178084751 0.6675153118170423 0.7020784386695532 1.1293601541847778 1.170337811918105 1.1815668793940592 1.7395313646622172 1.0 22.44406552243036 2.3947578303112262 2.0853659632082553 1.2923805349616893 0.8436557538204909 0.3068261078043729 0.2859431999620588 0.3819933146502664 3.3979927124192835 0.12223700503269169 0.09366959269234068 248.17488557388194 -2.3947578303112262 -0.4487247811411984 SYS(ph)PDGKESPSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYSPDGKESPSDK 13 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 S(0.004)YS(0.977)PDGKES(0.019)PS(0.001)DK;S(0.034)YS(0.926)PDGKES(0.02)PS(0.02)DK 191.57 9.0714e-06 372640000.0 349690.0 293430.0 266127.0 293640.0 287526.0 361230.0 398270.0 355480.0 696610.0 409400.0 True False 347807.30789421155 303196.6401678194 303595.36838264903 330814.79389241256 324140.7317998793 336259.02034395526 379004.158560853 382007.72269086435 524939.7995957661 383271.74149502604 0.9074692189346426 0.7910748624073924 0.7921151901218081 0.8631337979732214 0.8457204033240365 0.8773384101637952 0.9888653859073291 0.9967020297420541 1.369628237000036 1.0 18.54800810704466 1.7774468274929505 1.546232191797162 1.1672014314426182 0.8408935538323686 0.624327658521547 0.09835638388439175 0.22462288471923933 1.03265589396336 0.06989889260668025 0.028241498002820234 59.902759264410186 -1.7774468274929505 -0.3263078776102496 SYS(ph)PDGKESPSDKK ddPTM_BT-474_Trastuzumab_2h_R1 6 SYSPDGKESPSDKK 14 2 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 1 S(0.006)YS(0.516)PDGKES(0.239)PS(0.239)DKK;S(0.095)YS(0.6)PDGKES(0.297)PS(0.007)DKK;SYS(0.879)PDGKES(0.12)PS(0.001)DKK;S(0.003)YS(0.997)PDGKESPSDKK;S(0.001)YS(0.982)PDGKES(0.017)PS(0.001)DKK;S(0.004)YS(0.995)PDGKES(0.001)PSDKK 142.3 4.925e-06 17342160000.0 10995550.0 8113930.0 7052290.0 7619140.0 6889720.0 10751710.0 11415400.0 10390630.0 22658630.0 10839220.0 True False 10936351.180520449 8383997.255075738 8045191.132396443 8583722.342791984 7767085.003430182 10008469.594502974 10863193.490937201 11166031.573150052 17074714.24658649 10147451.699676879 1.0777436054087048 0.8262170151884247 0.7928287190223948 0.8458993052477709 0.7654222196177102 0.9863037431182521 1.0705341412251426 1.100377898177688 1.6826603123550905 1.0 23.27461413725503 1.8570568195510295 1.5561408472125555 1.3159292217278533 0.8648421980921392 0.472842069022139 0.18325004752394952 0.3053928646194945 1.3929722643010902 0.12524636420871743 0.053919690391182516 71.95431110029924 -1.8570568195510295 -0.45108702363571407 SYS(ph)PDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYSPDHR 7 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 S(0.031)Y(0.001)S(0.968)PDHR 80.165 0.032152 31246000.0 103970.0 152800.0 140840.0 145480.0 113330.0 123430.0 138040.0 121030.0 153290.0 145290.0 True False 103410.23707215302 157885.85563044943 160669.04779677468 163897.75308359956 127761.90374046305 114897.57462296689 131362.47783599098 130061.87317788723 115513.73348076416 136017.46781097286 0.7602717410962614 1.1607763191847362 1.1812383393290398 1.204975770548623 0.9393051186485637 0.8447266110161905 0.9657765281923125 0.9562144867939882 0.8492566090209583 1.0 17.053432413456665 3.1217642857588017 8.574189381270102 0.9237037695285143 1.0899420971275195 0.258049101833009 0.12479321403374989 0.3281677829890876 23.244974690232052 0.03601972912650178 0.04311851590726221 1323.6229410748563 -3.1217642857588017 0.16623832759900525 SYS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 5 SYSPER 6 0 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;F8VWU8;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3;Q8NEY8-5 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 1 S(0.002)YS(0.998)PER;S(0.002)YS(0.998)PER;S(0.028)YS(0.972)PER;S(0.015)YS(0.985)PER;S(0.016)YS(0.984)PER 110.81 0.029777 3326280000.0 2030160.0 2484840.0 2355420.0 2406520.0 2280720.0 2124020.0 2311980.0 2015700.0 2456380.0 2323310.0 True False 2019229.8441319787 2567546.397282503 2687042.6623223466 2711185.185253945 2571156.173113463 1977191.4968052688 2200140.694778715 2166121.7695172047 1851038.0628056556 2175034.366714235 0.9283668686037242 1.1804624499617564 1.235402393379921 1.2465022285370408 1.1821220907868406 0.9090391982137542 1.0115429569521732 0.9959023189088758 0.8510385358195367 1.0 21.05260676582416 2.7448763591454646 24.595141045805143 0.9616466239574749 1.165607519511506 0.5313106454350123 0.0939827550811132 328.8113624414241 1280477.121281029 0.02956561998766175 0.030651142340732847 555.746017418522 -2.7448763591454646 0.20396089555403119 SYS(ph)SER ddPTM_BT-474_Trastuzumab_2h_R1 3 SYSSER 6 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 S(0.017)YS(0.912)S(0.071)ER;S(0.05)YS(0.88)S(0.071)ER;S(0.255)YS(0.649)S(0.096)ER 75.21300000000002 0.082117 618830000.0 662510.0 711490.0 645120.0 609040.0 646410.0 593620.0 590180.0 611910.0 759150.0 644800.0 True False 658943.1197717815 735171.5145452132 735947.2885164393 686144.4015537212 728726.4819277567 552584.4466311731 561630.738693459 657573.8314160204 572067.6545888322 603648.311958946 1.0916010311258786 1.2178805108548236 1.2191656531402524 1.136662503581035 1.2072037103241617 0.9154079216057748 0.9303939521852839 1.0893326766409344 0.9476836814673945 1.0 19.203348748549214 2.746314059483902 24.9991779502405 0.9870765164872201 1.17729161180193 0.7422184749453624 0.058149525164151505 321.34598887824484 1036105.0160722398 0.018540650909142434 0.019333943574246244 557.5888227977009 -2.746314059483902 0.19021509531471004 SYS(ph)SPDITQAIQEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 6 SYSSPDITQAIQEEEKR 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 SYS(0.918)S(0.082)PDITQAIQEEEKR;S(0.001)YS(0.499)S(0.499)PDITQAIQEEEKR;S(0.044)YS(0.866)S(0.089)PDITQAIQEEEKR;SYS(0.9)S(0.1)PDITQAIQEEEKR;S(0.001)YS(0.963)S(0.036)PDITQAIQEEEKR;SYS(0.974)S(0.025)PDITQAIQEEEKR 347.03 8.988699999999995e-88 6997892000.0 2702450.0 1912720.0 1871090.0 1866440.0 1640403.0 2361910.0 2336980.0 2347480.0 3187530.0 2434890.0 True False 2687900.30947042 1976383.7289363411 2134523.2081941688 2102731.1126295975 1849298.5986196636 2198636.721038096 2223931.3492694423 2522660.8778619063 2402005.942213708 2279493.235585793 1.179165731886751 0.8670276788202192 0.9364025191527409 0.9224555176577348 0.811276194967266 0.9645287324018236 0.9756253339782023 1.1066761850748037 1.053745589026252 1.0 21.12028169732426 1.9500716587073554 3.9529145837171407 1.0627027059818457 0.936909628180608 0.2009993351708972 0.09299013541796032 0.30310456987389983 9.351809403573101 0.04242032120662488 0.02499078041301771 89.139800691323 -1.9500716587073554 -0.12579307780123772 SYSEDDIHR ddPTM_BT-474_Trastuzumab_2h_R1 3 SYSEDDIHR 9 0 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739;Q9Y5A9;Q9Y5A9-2 A0A024R7W5;Q9Y5A9 YTHDF3;YTHDF2 YTH domain-containing family protein 3;YTH domain-containing family protein 2 0 ;; 207.68 1.1287e-05 2887300000.0 2717490.0 3502520.0 3153270.0 3314920.0 3032460.0 3377360.0 3186900.0 2567040.0 3300950.0 3293380.0 False True 2702859.3357815244 3619099.2608819506 3597223.007285825 3734588.5321135987 3418625.8062013914 3143891.0526502826 3032737.471859747 2758605.559964996 2487475.1029638457 3083193.668795523 0.8766427367624365 1.173815092288959 1.1667197697286114 1.211272768853521 1.1087937293076073 1.0196865297399471 0.9836350867457876 0.8947234122476224 0.8067852266755595 1.0 21.555994083561792 2.261742495948982 1.6129672944414124 0.8924058196083576 1.1191621793992275 0.4557726503371361 0.09700550227372066 0.31678153990602537 1.6415391100398073 0.05187799386557837 0.032396628557926174 182.70166111217137 -2.261742495948982 0.22675635979086983 SYSFDEIRK ddPTM_BT-474_Trastuzumab_2h_R1 5 SYSFDEIRK 9 1 P43490 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ;;;; 114.5 0.0026115 3461120000.0 3210010.0 2674880.0 2367560.0 2091800.0 1991310.0 2747210.0 2728750.0 1824910.0 4130910.0 2447210.0 False True 3192727.662825637 2763911.763800894 2700891.868799572 2356621.665522915 2244891.5250809244 2557301.838936737 2596749.9376627104 1961094.0509052156 3112902.581858067 2291026.962638109 1.393579261568019 1.2064073487019376 1.178900079678462 1.0286311352744943 0.9798625514629213 1.1162251167886794 1.1334436390362523 0.8559890751556337 1.3587367729071032 1.0 21.127563006856064 4.606942142482839 1.166852619540216 1.0529845229928658 1.4955611083056422 0.3820014136211606 0.12548344585259158 1.2193902273952344 1.6535643259674098 0.03557058863368408 0.62243031612803 40452.199693610215 -4.606942142482839 0.4425765853127763 SYSMIVNNLLKPISVEGSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 SYSMIVNNLLKPISVEGSSK 20 1 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ; 240.31 9.752499999999999e-30 786520000.0 1499890.0 1367390.0 1294400.0 1151190.0 1243450.0 1630760.0 1624000.0 1641170.0 2133000.0 1745350.0 False True 1491814.7588934458 1412902.7495452892 1476640.2688735102 1296930.5359658306 1401795.9869944274 1518029.3995961258 1545440.9157175398 1763642.4390923975 1607350.7307356629 1633960.2687306867 0.9130055286181076 0.8647105909392019 0.9037185892045051 0.79373443821454 0.8579131413540354 0.9290491504884512 0.9458252720661858 1.07936678317304 0.9837146970435854 1.0 20.639941472757528 2.2092097320793473 1.9850788751866342 1.0269110179025442 0.866626118400153 0.7134675537381008 0.04121024250808218 0.16205888923495712 1.2791620119831224 0.020386571516859624 0.01293264791600334 161.88616392103287 -2.2092097320793473 -0.16028489950239122 SYSSGGEDGYVR ddPTM_BT-474_Trastuzumab_2h_R1 4 SYSSGGEDGYVR 12 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 ;;; 143.96 0.00013892 1524900000.0 753751.0 985453.0 914599.0 892005.0 891956.0 891002.0 914234.0 792314.0 977735.0 918211.0 False True 749692.8883656093 1018253.207386083 1043366.5893629824 1004932.7415406668 1005541.3095625904 829409.1289331026 870009.0087069628 851440.4939689699 736785.3102277701 859609.9878600126 0.8721314304780935 1.1845525549569411 1.213767410916699 1.1690566137352978 1.1697645720309415 0.9648667891794805 1.012097370893559 0.9904962785374557 0.8571158090682347 1.0 19.713322720060113 2.731511650310751 23.87027358763927 0.9704508460211004 1.1330663532613103 0.38827784955731226 0.09786623784208794 307.1215883417309 1040018.4615091704 0.03130336633664059 0.03013338002477446 538.904301735573 -2.731511650310751 0.1626155072402099 SYT(ph)PEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYTPEYR 7 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 SYT(1)PEYR 131.22 0.038979 585710000.0 589260.0 826820.0 726640.0 654300.0 811410.0 709470.0 720340.0 660390.0 851960.0 772480.0 True False 586087.4896329409 854340.2038767561 828944.5959318976 737134.3129131097 914738.2538961342 660426.00881274 685494.4022339733 709671.6551924725 642005.8736791161 723179.6650465981 0.8104313740558182 1.1813664641990544 1.1462498684590152 1.0192962392901526 1.2648838153340403 0.9132253584179326 0.947889487724746 0.9813213638228404 0.8877543226243073 1.0 19.463994585888905 2.650180741057914 24.999999538763127 0.9480945699653499 1.0896717366722506 0.2628127283983278 0.11571157241224136 94.04980569423347 26601.1846018651 0.03563226146138101 0.03359441911552186 446.86952789343485 -2.650180741057914 0.14157716670690068 SYTYDSYYS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 SYTYDSYYSR 10 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 SYTYDSYYS(1)R;SYTYDSYYS(1)R 181.4 1.9842e-06 712140000.0 488400.0 750670.0 611730.0 555490.0 715680.0 691570.0 679330.0 551490.0 505900.0 588300.0 True False 485770.5086663409 775655.5971604029 697856.2667475225 625814.9770443273 806817.6058322993 643763.3936806715 646468.2126073873 592644.9842094766 381227.7237126917 550754.1903310305 0.8820096463984574 1.4083516944177865 1.2670920693823071 1.1362872730358737 1.4649323055488004 1.16887607027327 1.1737871884711906 1.07606078104148 0.6921921438011301 1.0 19.071049040934554 1.5060092640455225 3.056559798935243 0.8479487715518454 1.2286609591929538 0.4271445353019774 0.16665177539646503 0.19310171288155475 3.7468050541164284 0.11329947615763755 0.04123038001938146 32.06337718977468 -1.5060092640455225 0.38071218764110837 SYVAWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYVAWDR 7 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 86.95299999999997 0.045825 405270000.0 177510.0 229970.0 210370.0 196500.0 186460.0 215100.0 203760.0 197540.0 282690.0 230500.0 False True 176554.30588321493 237624.4124301995 239988.26743118084 221376.87985240103 210204.5757649935 200230.64329093602 193903.35036121064 212281.43788779495 213024.83735192884 215789.29265902174 0.8181791770465472 1.1011872252887005 1.1121416844829135 1.0258937184719747 0.9741195829264202 0.9278988814673459 0.8985772554878613 0.9837440740084833 0.987189098805467 1.0 17.71926375533795 3.159916538486686 4.152680751125629 0.9553170910248172 1.027711963360202 0.08448661379275024 0.0801684030713016 0.4282277495286867 14.067345564165086 0.023558396750007655 0.029043531077692773 1445.1620168152551 -3.159916538486686 0.07239487233538489 SYVS(ph)EPELATLSGDMAQPSLGLVGPESR ddPTM_BT-474_Trastuzumab_2h_R1 1 SYVSEPELATLSGDMAQPSLGLVGPESR 28 0 E9PKC0;Q6IQ23;Q6IQ23-2;A0A1B0GTN9;H0YDE2;Q6IQ23-3;A0A1B0GUN0;A0A1B0GUM1 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 1 S(0.169)Y(0.077)VS(0.754)EPELATLSGDMAQPSLGLVGPESR 172.36 1.6954e-12 49365000.0 27058.0 13124.0 12734.0 17705.0 10979.0 13625.0 10368.0 14025.0 19889.0 17110.0 True False 26912.32273442642 13560.824406374475 14526.836514087825 19946.451184665446 12377.110572368678 12683.1358198001 9866.460230393748 15071.616717506955 14987.622448945898 16018.025151392012 1.6801273864954358 0.8465977720852811 0.9069055877231783 1.2452503349285877 0.7726989098461412 0.7918039645915963 0.615959841312668 0.9409160352203085 0.9356723008793273 1.0 13.967408669623298 4.7403489433535375 24.804561811172537 0.8870677209015666 1.680127682828162 0.6942678772968527 0.15620396860550095 80.61611195515393 1118066.078044522 0.03842783876057774 0.24706121834167025 54998.25918632275 -4.7403489433535375 0.7930599619265953 T(ph)AMRVSPHHPAPTPNPR ddPTM_BT-474_Trastuzumab_2h_R1 4 TAMRVSPHHPAPTPNPR 17 1 A8MZI9;Q01196-7;Q01196-3;Q01196-4;Q01196;Q01196-9;Q01196-10;Q01196-2;Q01196-8;Q01196-11 A8MZI9 RUNX1 Runt-related transcription factor 1 1 T(0.597)AMRVS(0.403)PHHPAPTPNPR;T(0.554)AMRVS(0.446)PHHPAPTPNPR;T(0.5)AMRVS(0.5)PHHPAPTPNPR;T(0.505)AMRVS(0.495)PHHPAPTPNPR 110.67 0.0008021 1068843000.0 524426.0 647236.0 599347.0 684237.0 704684.0 680523.0 695591.0 439630.0 862524.0 667899.0 True False 521602.54868520546 668778.8589975752 683729.8479824879 770861.3340436005 794421.330410697 633480.046788831 661942.605914334 472437.4229959063 649966.5174294643 625273.1140028972 0.8341995473721722 1.0695787872857052 1.0934899209168938 1.2328394053418852 1.270518934238097 1.013125356907471 1.0586455599804774 0.7555697061263973 1.039492188091191 1.0 19.254126958855853 1.9391345969973812 10.152789080540934 0.9048837067461067 1.0950301899930448 0.205744957738504 0.13215196552056882 0.8185774017160558 133.6700159497092 0.056872392791077864 0.036224317477019465 86.92297801426247 -1.9391345969973812 0.19014648324693806 T(ph)AS(ph)PPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 5 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK 155.33 0.00039025 6242210000.0 9842680.0 8275820.0 6210440.0 6912720.0 7373100.0 9634070.0 9084950.0 8601360.0 12263330.0 9312140.0 True False 9789688.104504555 8551275.66586116 7084815.969887833 7787869.643222843 8312020.5812124405 8968089.417061398 8645476.26062074 9243237.160021085 9241196.641703032 8717831.252675837 1.122949942567393 0.9808948370314515 0.8126810171638997 0.8933264957190411 0.9534505016555767 1.0287064703516424 0.9917003449644786 1.0602679602434357 1.0600338976355563 1.0 23.05553784765661 2.757929319983807 4.278978518109027 1.0317863283832083 0.9422000454594859 0.19269943237401244 0.07588145153637861 0.3361752066721859 15.159358262077676 0.025885411754010927 0.02636205062113267 572.7028178776942 -2.757929319983807 -0.0895862829237224 T(ph)AS(ph)PPPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR 104.24 0.0023436 8815100000.0 5454500.0 5200420.0 3628180.0 4311950.0 4563820.0 5585060.0 5813200.0 5173640.0 7140700.0 5689000.0 True False 5425133.57805192 5373512.835979725 4138996.2072941014 4857842.427885805 5144995.425119551 5198977.948017083 5531993.307419456 5559723.288011599 5380970.165477804 5325923.1494020615 1.0186278370653916 1.0089354812757685 0.77714155671938 0.9121127533413982 0.9660288518615175 0.9761646576895818 1.0386919135400086 1.0438985190080683 1.0103356760004925 1.0 22.344600180603372 2.6282196258968296 1.9392279548083078 1.028556508475967 0.9269734647909014 0.28976922561998986 0.06357976010779544 0.4201184212387081 3.1410691651893856 0.026331037792323344 0.023946192749697753 424.8343514715832 -2.6282196258968296 -0.10158304368506554 T(ph)ASFGNILDVPEIVISGNGQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TASFGNILDVPEIVISGNGQPR 22 0 O43318;O43318-3 O43318 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 T(0.5)AS(0.5)FGNILDVPEIVISGNGQPR;T(0.5)AS(0.5)FGNILDVPEIVISGNGQPR 174.7 2.5957e-11 53359000.0 309372.0 160679.0 146477.0 185017.0 126619.0 151158.0 125532.0 167458.0 232920.0 197001.0 True False 307706.3755264608 166027.10338249351 167099.68839909212 208440.13322977978 142743.17912038884 140708.80324765813 119459.53758119095 179954.56629449406 175519.98696809693 184428.22751895848 1.6684342720521448 0.9002260967097707 0.9060418280163482 1.130196478238956 0.7739768528964224 0.7629461343339855 0.6477291420528942 0.9757430774852264 0.9516980634108961 1.0 17.49269995767148 4.738776015658292 6.4468138590937745 0.8851955353928666 1.6846569937659357 0.7602135865177929 0.13037136446214972 0.058125680695226466 14.323466425738872 0.03239631302350401 0.20298377697837208 54799.42678164845 -4.738776015658292 0.7994614583730691 T(ph)ASGSSVTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 T(0.652)AS(0.345)GS(0.002)SVTSLDGTR 111.83 0.0037533 0.0 98797.0 108740.0 94907.0 86636.0 79603.0 129430.0 118370.0 85002.0 121410.0 131020.0 True False 98265.08792937857 112359.34516528198 108269.08065356778 97604.1087170108 89739.97020605378 120482.80874544787 112643.99088268788 91345.28087141013 91490.13231065024 122658.19142813447 0.8011294377102581 0.9160362129675897 0.8826893613297953 0.7957406478979198 0.73162639332272 0.9822646766811236 0.9183568546963786 0.7447140692998837 0.7458950050168837 1.0 16.90428405841899 -1.2071739091543408 5.067749153004629 1.0000157210656622 0.8361954367849668 0.26697539640294765 0.08182106309400271 1.5036030807947701e-05 2.3523216140118023e-06 0.08196386871214394 0.01931721589133966 0.062062046281750126 1.2071739091543408 -0.1638202842806954 T(ph)ASPPPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.696)AS(0.304)PPPPPKR 128.01 0.00019971 921840000.0 538220.0 437200.0 435700.0 492080.0 448410.0 522100.0 563830.0 511930.0 671550.0 532260.0 True False 535322.2833218636 451751.93770701886 497042.7728277105 554377.2775459012 505512.35556570214 486008.45589120244 536555.3888602349 550132.8161278674 506055.5008089698 498290.7111092884 1.0743172035660389 0.906603168863683 0.9974955618201276 1.1125579208806715 1.0144928337924202 0.9753512258120498 1.076791874497845 1.104039878454023 1.0155828505861477 1.0 18.926628154696523 3.9800844986489534 24.635207595089252 1.0489869617774172 0.9808574848841336 0.1295671875753116 0.056763764547826626 900.9548846630021 1114474.153519829 0.014453835880583665 0.026527521476554895 9551.784125456787 -3.9800844986489534 -0.06812947689328364 T(ph)CNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 2 T(0.405)CNS(0.356)PQNS(0.39)T(0.39)DS(0.447)VS(0.012)DIVPDSPFPGALGSDTR 75.717 0.0075956 42896000.0 17563.0 17841.0 21689.0 24148.0 19939.0 23293.0 24487.0 17721.0 22746.0 19767.0 True False 17468.44275943273 18434.826899887747 24742.62267583248 27205.13432404977 22478.113462287925 21682.80973582411 23302.470260575974 19043.431005414688 17140.55308078451 18505.453136619883 0.9439619030384594 0.996183490552178 1.3370449506513327 1.4701144642718502 1.2146751174553334 1.171698394832421 1.2592218136211655 1.0290713156183253 0.9262433594163434 1.0 14.175662842393763 1.6035193966379324 4.292970334015754 0.967051304070216 1.2060983265933949 0.3210683375182035 0.14391022178273047 0.21055369447755762 8.759069685402311 0.0921394951231559 0.04127228281034394 40.13464229606945 -1.6035193966379324 0.2390470225231789 T(ph)DGSISGDRQPVTVADYIS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 T(0.473)DGS(0.318)IS(0.233)GDRQPVT(0.266)VADYIS(0.709)R 154.66 9.7545e-07 751950000.0 884690.0 848570.0 674430.0 762190.0 814430.0 1075100.0 983700.0 865590.0 1185600.0 925160.0 True False 879926.9273382995 876814.1394786031 769383.8817493527 858683.1758508994 918142.8329951932 1000780.8675131792 936114.6729010734 930184.7211769595 893424.7662260664 866115.4967306755 1.015946407447688 1.0123524435116469 0.8883155706756715 0.9914187877854272 1.060069744117159 1.1554820012929279 1.0808196787086983 1.0739730725153007 1.0315307480335765 1.0 19.724199895982625 3.2483727193940637 4.170826336050137 1.0767213028293856 0.9713539091234639 0.43588892472535723 0.04989447455126128 0.17674472812087408 7.0296297929153315 0.014523777610727784 0.018944830705087803 1771.6287499640412 -3.2483727193940637 -0.10536739370592174 T(ph)DKSSASAPDVDDPEAFPALA ddPTM_BT-474_Trastuzumab_2h_R1 1 TDKSSASAPDVDDPEAFPALA 21 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 T(0.37)DKS(0.295)S(0.295)AS(0.039)APDVDDPEAFPALA 123.19 4.3372e-05 35500000.0 123110.0 108430.0 102680.0 98898.0 99647.0 123100.0 119050.0 107590.0 182720.0 126440.0 True False 122447.18943880682 112039.0270026808 117136.4514894407 111418.47665975949 112336.45479595798 114590.38674623065 113291.09668483556 115618.91213094996 137691.10432255972 118370.49094926973 1.034440158664918 0.9465114667024367 0.9895747711280686 0.9412690254660709 0.9490241520084784 0.9680654851329532 0.957089015820581 0.9767545205206675 1.1632215361983271 1.0 16.852949945038382 1.3551400973354677 8.847121721911167 1.0810166142660886 0.9676353911713015 0.4992624772343873 0.04458514536315945 0.17459804523001685 12.51148282052608 0.026698604276675007 0.009754062745417458 22.653749680677826 -1.3551400973354677 -0.11338122309478715 T(ph)DSQSVRHSPIAPSSPSPQVLAQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDSQSVRHSPIAPSSPSPQVLAQK 24 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 T(0.254)DS(0.217)QS(0.217)VRHS(0.217)PIAPS(0.044)S(0.044)PS(0.009)PQVLAQK 86.625 0.017194 648580000.0 238360.0 371980.0 354070.0 357340.0 358840.0 425780.0 471860.0 428070.0 479130.0 505090.0 True False 237076.69624428582 384361.12943334173 403919.9783683893 402579.20736110484 404536.1469886856 396346.8307783104 449034.3291197524 460014.7570954161 361054.83151307015 472854.7237706952 0.5013732216816197 0.812852468445959 0.854215804692405 0.8513803227993773 0.8555188869908809 0.8382000027782607 0.9496242853175044 0.9728458530076868 0.7635639729553786 1.0 18.851037483607026 5.084036902961931 1.358224116582285 0.8935980538609891 6.14339910673264e-17 0.7472011113885977 0.0669087660420054 1.4385080269721349 1.269713886742837 0.018344296107525075 2.2110022057302423 121349.19591778527 -5.084036902961931 -0.893598053860989 T(ph)ES(ph)KIRR ddPTM_BT-474_Trastuzumab_2h_R1 2 TESKIRR 7 2 Q6P6B7-2;Q6P6B7 Q6P6B7-2 ANKRD16 Ankyrin repeat domain-containing protein 16 2 T(1)ES(1)KIRR;T(1)ES(1)KIRR 79.597 0.035528 1611160000.0 1294780.0 1743130.0 1494040.0 1669110.0 1563230.0 1563260.0 1697740.0 1387650.0 2228700.0 1700760.0 True False 1287809.048343583 1801149.0283056644 1704387.8455715245 1880419.1548622958 1762298.0745098717 1455195.5157182156 1615613.8302033832 1491203.4893439251 1679466.7480499616 1592216.040706106 0.8088155221526807 1.1312215065405962 1.0704501160631903 1.181007543441391 1.1068209523428358 0.9139435092444331 1.014695109770971 0.9365585141841779 1.0547982843491277 1.0 20.602604671354655 2.750122085137561 24.812007282250846 0.9790791761810649 1.0709792277187347 0.12014469423786356 0.09961942934532003 1214.2265172677503 2605843.3566910923 0.02989276010191253 0.031467511580522384 562.499427978783 -2.750122085137561 0.09190005153766978 T(ph)GRYARLPKDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGRYARLPKDPK 12 3 Q01970 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 1 T(0.998)GRY(0.002)ARLPKDPK 68.513 0.053963 85059000.0 124250.0 199010.0 197420.0 226650.0 211930.0 207870.0 215040.0 206400.0 217360.0 241780.0 True False 123581.05180547266 205633.92754591463 225215.01999459873 255343.86676105188 238918.02929247575 193500.43617334653 204637.6936674258 221802.6160779632 163794.54047477903 226349.39340172792 0.5459747426234068 0.9084801353143138 0.9949883965223804 1.128096094818616 1.0555275881320383 0.8548749933246756 0.9040788251825889 0.9799125712005111 0.7236358711334132 1.0 17.788191914720414 4.733682895351163 3.676152877396466 0.9587829832009155 0.5029700512410265 0.5732316918608797 0.10519049804699881 0.1918121082211121 4.848049733118456 0.026137563325289662 0.23774271371519617 54160.52872389192 -4.733682895351163 -0.45581293195988903 T(ph)HT(ph)GQYS(ph)ALS(ph)VACGPSGEAGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 THTGQYSALSVACGPSGEAGPR 22 0 Q8N9L1-2 Q8N9L1-2 4 T(0.672)HT(0.672)GQY(0.642)S(0.672)ALS(0.672)VACGPS(0.672)GEAGPR 51.348 0.084229 1177500000.0 0.0 9791.8 0.0 12323.0 12909.0 0.0 9015.8 0.0 0.0 22269.0 True False 0.0 10117.714143731902 0.0 13883.090536494343 14552.884632362444 0.0 8579.671310299376 0.0 0.0 20847.773354549896 0.0 0.4853138976361605 0.0 0.6659267779052502 0.6980546260201149 0.0 0.4115389765798138 0.0 0.0 1.0 14.347605684471613 -1.4231432819584833 2.9846882037475146 1.0140009224776405 0.2569196268467166 0.39638508809762674 0.27712750318766705 61272861.89118124 73669540.2759074 7317427.126537994 0.06662994065725619 0.03774476432693167 1.4231432819584833 -0.7570812956309239 T(ph)HTDSSEKELEPEAAEEALENGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 T(0.267)HT(0.267)DS(0.233)S(0.233)EKELEPEAAEEALENGPK 95.212 0.010418 138540000.0 145670.0 86457.0 72072.0 70607.0 71658.0 130640.0 111230.0 29429.0 163990.0 66323.0 True False 144885.72890545859 89334.66898063988 82219.11113894587 79545.83896050115 80783.2215497582 121609.16429348156 105849.37996013676 31625.14141743405 123576.86185341826 62090.20935802295 2.333471418497275 1.438788335621815 1.3241880159375237 1.2811333668054814 1.3010621543236887 1.9585884079124611 1.7047676446022404 0.5093418389858856 1.9902793553304448 1.0 15.922078175785767 4.739614479501694 3.9893671006168367 1.353543814482243 2.4231859088608267 0.3139221375803477 0.41731042500759064 0.28775512625640204 9.568975602315584 0.10222103849857857 0.8939472144547469 54905.32663122943 -4.739614479501694 1.0696420943785838 T(ph)KDT(ph)S(ph)VK ddPTM_BT-474_Trastuzumab_2h_R1 1 TKDTSVK 7 1 Q5CZC0 Q5CZC0 FSIP2 Fibrous sheath-interacting protein 2 3 T(1)KDT(1)S(1)VK 43.70399999999999 0.097684 0.0 103500.0 258370.0 257950.0 273900.0 218990.0 215090.0 187660.0 172950.0 168700.0 249350.0 True False 102942.76749993108 266969.6892620371 294267.11785840703 308575.7119164 246877.07844457778 200221.3345673982 178582.16886918308 185856.4072223051 127126.14546418493 233436.2695207247 0.44098874485651307 1.1436512835394472 1.2605886757125448 1.3218841808513582 1.0575780659597107 0.857713049383795 0.7650146621852539 0.7961762223320854 0.5445860907784021 1.0 17.83266920768636 2.6241135782614027 3.0789097927590627 0.7665937999887193 1.07887158838125 0.20636690265292978 0.2466357663194988 0.37851470402698184 6.861998375937681 0.0865455741066993 0.08081711146710337 420.8366727207619 -2.6241135782614027 0.31227778839253073 T(ph)KFASDDEHDEHDENGATGPVK ddPTM_BT-474_Trastuzumab_2h_R1 6 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 T(0.622)KFAS(0.378)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK 190.31 1.0176e-17 11155460000.0 5921090.0 4344100.0 3961200.0 3901700.0 4172090.0 5850060.0 5460070.0 2999930.0 8439750.0 4743980.0 True False 5889211.509334947 4488690.742436098 4518902.528632377 4395654.819949684 4703380.931585172 5445659.1217599865 5195945.554607063 3223800.0099358736 6359886.699355985 4441215.134874384 1.3260360803263629 1.0106897788375335 1.0174923734605779 0.9897414753527835 1.059030195284202 1.226164226767189 1.1699378203515074 0.7258824245241288 1.432015001798797 1.0 22.082523027253593 2.7752712436254474 0.011365234050122705 3.0316281254459744e-05 2.147775790744312 0.0 0.19036990350980926 11188.318167477019 48.447396258760804 4429.4628517176625 4721.11231310372 596.0342873891293 -2.7752712436254474 2.1477454744630577 T(ph)KSNSLSEQLAINTSPDAVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKSNSLSEQLAINTSPDAVK 20 1 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 T(0.369)KS(0.192)NS(0.192)LS(0.248)EQLAINTSPDAVK;T(0.48)KS(0.256)NS(0.256)LS(0.009)EQLAINTSPDAVK 290.66 3.0286e-54 510860000.0 676220.0 605720.0 596950.0 614760.0 614530.0 853280.0 837710.0 776050.0 1284550.0 938370.0 True False 672579.306655104 625881.0240345283 680995.3712175854 692588.5529672363 692786.7528953212 794294.7620050652 797186.7669370329 833962.791702052 967989.864588136 878482.4232210253 0.7656149842919325 0.7124570822256022 0.7751952153130873 0.7883920436652626 0.7886176599358287 0.9041669372196665 0.9074589836573902 0.949322114657982 1.1018887105776398 1.0 19.744653895348275 2.2921397160928505 0.7411953664673787 1.0406681325561216 0.7426997007313654 0.8885652662695738 0.03914610954758356 0.2036879976256786 0.21734920206059624 0.031325337902451386 0.02044873624976302 195.94749512629065 -2.2921397160928505 -0.2979684318247562 T(ph)KSPKPAESPQSATK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKSPKPAESPQSATK 15 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 T(0.5)KS(0.5)PKPAESPQSATK;T(0.682)KS(0.317)PKPAESPQSATK 188.56 1.402e-05 829320000.0 922270.0 590490.0 511250.0 539620.0 504780.0 822660.0 797640.0 748540.0 1249120.0 818560.0 True False 917304.6007938295 610144.1026912564 583229.556135339 607935.8366715143 569060.7409345356 765791.4505333388 759055.1059192969 804399.8558091028 941291.1133504591 766318.7999955268 1.1970274000835999 0.7962014016814125 0.7610795352257356 0.7933197471797155 0.7425900825320446 0.9993118406305691 0.9905213155722236 1.0496934902468766 1.2283283580618847 1.0 19.547585174015524 2.2317044559563386 1.6437707393208338 1.0929949506779302 0.8493249195332534 0.34231007447491457 0.13608464284849195 0.41163400286570984 2.2034865755576583 0.07407775772812056 0.045147640026576896 170.49217687732593 -2.2317044559563386 -0.24367003114467678 T(ph)KSPTDDEVTPSAVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKSPTDDEVTPSAVVR 16 1 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 T(0.829)KS(0.171)PTDDEVTPSAVVR;T(0.488)KS(0.488)PT(0.025)DDEVTPSAVVR 208.47 2.3859000000000003e-11 5738900000.0 677320.0 600140.0 524260.0 548200.0 552990.0 627990.0 648040.0 573190.0 807020.0 582630.0 True False 673673.3843773266 620115.2971077085 598071.2510503918 617602.0637917876 623409.9986714782 584578.5294294505 616691.8294467939 615964.3483998446 608140.7345139679 545446.0545853615 1.2350870974572201 1.1368957422913422 1.0964810287335107 1.1322880761531546 1.1429361225197303 1.071743987356984 1.1306192872099738 1.129285551195507 1.1149420357917261 1.0 19.057076993385984 -4.999999999999999 0.1260995339644249 0.5905883239888782 1.1861072251235645 0.588383188945284 0.03612491625644105 114.15739430585707 0.9186276280070543 11.992125895163127 0.30569702218511646 1.0000000000000021e-05 4.999999999999999 0.5955189011346863 T(ph)KSWGEQCPETSGTDSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKSWGEQCPETSGTDSGR 18 1 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 T(0.723)KS(0.277)WGEQCPETSGTDSGR 156.23 2.1164e-08 763410000.0 412730.0 310640.0 292210.0 279530.0 315880.0 379140.0 371820.0 366390.0 515590.0 373260.0 True False 410507.90753861394 320979.46461415436 333350.6280651484 314918.46933914325 356105.445632555 352930.94419956004 353833.64610966487 393731.88229072234 388529.7530520394 349438.22723603644 1.174765310554665 0.9185585307967495 0.9539615362116027 0.9012135616359569 1.0190798197703053 1.0099952343255345 1.0125785289960834 1.1267567529890388 1.1118696317950287 1.0 18.41467791677028 1.9017862088059088 4.80425191162391 1.0908522331825667 0.9890949447118375 0.18120564741632805 0.0773251597719042 0.3081473812812927 11.126441474921032 0.03481941060927721 0.02043553282346816 79.76019531689118 -1.9017862088059088 -0.10175728847072929 T(ph)LDAEVVEKPAKEETVVENATPDYAAGLVSTQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLDAEVVEKPAKEETVVENATPDYAAGLVSTQK 33 2 A0A0C4DFX9;Q9H3P2;H0Y3X6;Q9H3P2-7;H7C2C7 A0A0C4DFX9 NELFA Negative elongation factor A 1 T(0.789)LDAEVVEKPAKEET(0.211)VVENATPDYAAGLVSTQK 178.19 6.9778e-18 94108000.0 385830.0 155670.0 201090.0 200610.0 168090.0 229580.0 187240.0 245460.0 429800.0 330820.0 True False 383752.7341497426 160851.38184549776 229401.7240943869 226007.2054309933 189495.26515251404 213709.6749731896 178182.48587373883 263777.4716206248 323881.54902493546 309706.78437074885 1.239084041795977 0.519366671841916 0.7407061636072233 0.7297457364073785 0.6118537749746868 0.6900387261693258 0.575326388912544 0.8517006566600033 1.0457683375680207 1.0 18.240543461165338 1.4426273731928052 4.036251436318454 1.0154115697144381 0.7153659222986669 0.2795557847092325 0.18616261183309166 0.2474612995731025 7.434199402686347 0.1229170162613443 0.04480942213746395 27.70941602854482 -1.4426273731928052 -0.3000456474157712 T(ph)LDRS(ph)GDLGDMEPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLDRSGDLGDMEPLK 15 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;H0YC95 O60716-13 CTNND1 Catenin delta-1 2 T(1)LDRS(1)GDLGDMEPLK;T(1)LDRS(1)GDLGDMEPLK 257.96 1.9115e-24 273620000.0 638730.0 572600.0 464900.0 496580.0 532360.0 688360.0 567160.0 542810.0 933150.0 557220.0 True False 635291.1486495739 591658.6448559908 530353.8790167605 559446.9770845049 600152.8904550674 640775.2934251447 539724.3040383992 583317.2385333297 703187.6860693775 521657.7425399563 1.217831341975939 1.1341893287641038 1.0166701953554118 1.0724406664809623 1.15047250623161 1.2283442594088683 1.0346329787237063 1.11819913894722 1.3479866754120244 1.0 18.992744045434762 3.207825553253664 24.42150429649173 1.146122669139117 1.1053038393682875 0.028496569496882396 0.10223630572439699 654.3607553585575 519940.2744776735 0.029550774690138833 0.035324216106657466 1613.7102339564124 -3.207825553253664 -0.04081882977082962 T(ph)LQRLSSGFDDIDLPSAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLQRLSSGFDDIDLPSAVK 19 1 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 T(0.614)LQRLS(0.304)S(0.082)GFDDIDLPSAVK 121.62 5.6233e-05 276170000.0 70921.0 88726.0 91576.0 103500.0 91751.0 131760.0 142500.0 112770.0 181110.0 139050.0 True False 70539.16921606383 91679.19127400043 104469.10480713897 116603.08938790599 103434.94599921646 122651.7413296778 135606.73059713622 121185.47003445694 136477.8672496652 130175.70995330556 0.5418765854349207 0.7042726427755689 0.8025237952964679 0.895736151004914 0.7945794652191174 0.9422014396823598 1.041720691562034 0.9309376540210655 1.0484126977192614 1.0 16.990100749367933 5.283169898005844 0.4017537280396054 1.0123278742790014 2.3554070328666486e-16 0.8831605951306163 0.05219628205881948 2.7492315955285007 0.25135752449599286 0.04053194388468831 1.459440828031698 191941.9479574107 -5.283169898005844 -1.0123278742790012 T(ph)LRDSPNVEAAHLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLRDSPNVEAAHLAR 15 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 T(0.663)LRDS(0.337)PNVEAAHLAR 148.38 5.7278e-06 603600000.0 123370.0 111080.0 101660.0 111770.0 101720.0 112340.0 118040.0 124180.0 147760.0 119800.0 True False 122705.78962769547 114777.230650722 115972.84435543964 125920.07053996368 114673.43905832425 104574.20021991506 112329.9542434104 133446.94217326312 111346.52788256046 112154.26143405974 1.0940804928739996 1.0233871560752457 1.034047595450709 1.1227399559311213 1.0224617200635362 0.932413970568552 1.0015665281649058 1.1898517315966834 0.9927980128336525 1.0 16.775124912810032 T(ph)LSDPPSPLPHGPPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 1 T(0.56)LS(0.44)DPPSPLPHGPPNK 84.94 0.021369 0.0 158850.0 133400.0 124370.0 160650.0 137590.0 206070.0 157230.0 96617.0 186660.0 119830.0 True False 157994.76924989402 137840.13835799697 141880.2149565809 180988.27352818457 155111.2709401774 191824.865936602 149624.18422307205 103827.05115118515 140660.1441158551 112182.34680837566 1.4083746128058177 1.2287150543699061 1.2647285334379184 1.6133400546285575 1.382670940242771 1.709938073093334 1.3337587283554755 0.9255204058846922 1.25385275061257 1.0 16.775486143469408 1.9090756956096835 6.029831475900206 1.063987781952348 1.430865052737236 0.5367150562429288 0.1556858720469739 0.18465498999286575 9.871469201302466 0.06981752919205016 0.04248268909678646 81.1102417102562 -1.9090756956096835 0.36687727078488797 T(ph)LTPPLRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLTPPLRR 8 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 T(0.788)LT(0.212)PPLRR;T(0.768)LT(0.232)PPLRR;T(0.847)LT(0.153)PPLRR 89.08 0.0082977 1428110000.0 711470.0 723930.0 611130.0 673980.0 670360.0 751480.0 758510.0 695050.0 932020.0 721530.0 True False 707639.5245717482 748025.5724250734 697171.7919628159 759305.7988952731 755726.3724649852 699531.9563936427 721817.9735104134 746918.1603923866 702336.1594281535 675481.3376670878 1.0476078095891224 1.1073963568091043 1.0321111081627221 1.1240958951104263 1.118796819872241 1.0356051564794058 1.0685979512081838 1.105756915464194 1.0397565710013756 1.0 19.36555638547249 1.0050109973320507 5.2322043097823 1.0000967971523205 1.0810418857706305 0.388057054690522 0.03213973313078466 0.13634710572684916 13.097608835380841 0.029725521333240315 0.00750603894602823 10.116050700953974 -1.0050109973320507 0.08094508861831007 T(ph)MIISPERLDPFADGGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TMIISPERLDPFADGGK 17 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 T(0.849)MIIS(0.151)PERLDPFADGGK;T(0.598)MIIS(0.402)PERLDPFADGGK;T(0.615)MIIS(0.385)PERLDPFADGGK 114.88 0.00094416 444019000.0 330554.0 383995.0 311283.0 324014.0 342789.0 401526.0 383578.0 405413.0 521431.0 388905.0 True False 328774.333992002 396776.0414451206 355108.94067966053 365034.13917809655 386441.14728041633 373769.4527105356 365022.86672974285 435666.9767055004 392931.3168674296 364084.7499416778 0.9030159435259727 1.0897903345544673 0.9753469233098747 1.0026076050605548 1.0614043772564485 1.0266001329921377 1.0025766440044943 1.196608692825748 1.0792303630689632 1.0 18.473914787742505 1.7718300602323562 24.99999999941704 1.1123684617174912 1.0130682351905416 0.2342725618407837 0.06555982313890434 35.1773012517329 26446.32042591016 0.028126743538120967 0.015603853015067622 59.133020093211336 -1.7718300602323562 -0.09930022652694959 T(ph)NHRLSLPMPASGTSLSAAIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNHRLSLPMPASGTSLSAAIHR 22 1 Q14451;Q14451-3;Q14451-4 Q14451 GRB7 Growth factor receptor-bound protein 7 1 T(0.588)NHRLS(0.412)LPMPASGTSLSAAIHR;T(0.774)NHRLS(0.226)LPMPASGTSLSAAIHR 142.46 2.2898000000000006e-07 470130000.0 193971.0 216409.0 190694.0 205245.0 183182.0 208027.0 205532.0 160794.0 300280.0 231987.0 True False 192926.68168820388 223612.0427429969 217542.05765803854 231228.99595575602 206509.14189522152 193646.58313288484 195589.63195151303 172793.26477538777 226280.01754585293 217181.39104593685 0.8883204990956027 1.0296095888606769 1.0016606699605557 1.0646814390596104 0.9508602044617257 0.8916352464651354 0.9005819099397109 0.795617266945489 1.0418941349260977 1.0 17.72854096710077 2.995586105754174 6.528005237057522 0.9032562038775975 1.0001368367785486 0.12552501292071028 0.0760683408367737 0.1973421711791938 41.57788688748978 0.022478175870563666 0.025561564931620148 989.8881053973125 -2.995586105754174 0.09688063290095106 T(ph)NSAEVT(ph)PPVLSVMGEATPVSIEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSAEVTPPVLSVMGEATPVSIEPR 25 0 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 2 T(0.53)NS(0.53)AEVT(0.938)PPVLS(0.001)VMGEATPVSIEPR 77.649 0.046988 12461000.0 11074.0 11501.0 9559.4 12180.0 10596.0 14088.0 11579.0 8295.3 13160.0 13083.0 True False 11014.37881443706 11883.803832498692 10905.280428205677 13721.98675115646 11945.337792587527 13114.12971958486 11018.879533924508 8914.337408679889 9916.89433496545 12248.031739080174 0.8992774552741515 0.9702623315859537 0.8903700333670643 1.1203421940337803 0.9752863192273716 1.0707132377638442 0.8996449199887544 0.7278179546381021 0.8096724883005738 1.0 13.580262306049285 2.0015557814105915 11.670938885544189 0.8151002478187601 0.9877496480072537 0.3164574649542907 0.09169006557781306 0.09496230189384611 466.58718583250624 0.034029295612921916 0.024343618644008674 100.35887432578514 -2.0015557814105915 0.17264940018849362 T(ph)NSAEVTPPVLSVMGEATPVSIEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSAEVTPPVLSVMGEATPVSIEPR 25 0 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 T(0.462)NS(0.462)AEVT(0.076)PPVLSVMGEATPVSIEPR 81.373 0.080627 20198000.0 33171.0 26050.0 24999.0 30533.0 26555.0 29607.0 26660.0 25652.0 38712.0 28825.0 True False 32992.41102164458 26917.05850244246 28518.641904796736 34398.47466938098 29936.62184618364 27560.33777738139 25370.353948909873 27566.28249821665 29171.946314223605 26985.363821675917 1.2226038989010597 0.9974688012477865 1.0568188775683365 1.2747085752370142 1.1093651374874973 1.0213068817417101 0.9401523772872467 1.0215271760047242 1.0810284607240064 1.0 14.71988951767302 2.7504948327605123 4.658469942491017 1.0078901911986389 1.1294833869927834 0.3630416490696593 0.07929641905791723 0.23145320936924155 13.907502323246607 0.02595007670266577 0.02628574796080228 562.9824189847227 -2.7504948327605123 0.12159319579414452 T(ph)NSGGGDGPHISSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSGGGDGPHISSK 14 0 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 T(0.611)NS(0.389)GGGDGPHISSK 93.381 0.016868 265070000.0 205040.0 280530.0 306900.0 313280.0 321910.0 384250.0 351530.0 309230.0 365620.0 370690.0 True False 203936.0874220858 289867.2714660341 350108.85237737943 352941.2158786782 362903.3303899444 357687.7019272064 334525.15092499205 332306.31283812283 275517.8500569959 347032.2468363241 0.5876574562774599 0.8352747449511471 1.0088654745174341 1.017027146889727 1.0457337428965379 1.030704509993009 0.9639598451574705 0.9575660932594927 0.7939257880750847 1.0 18.404710201186496 4.627749101198455 2.4393934808394087 0.9793634780802274 0.545861960583835 0.7558018396657816 0.06784251420010484 0.20141218274965544 1.7420373668314286 0.01766728927935398 0.16397537040430737 42437.43253440581 -4.627749101198455 -0.43350151749639243 T(ph)PAPEPEPCEASELPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPAPEPEPCEASELPAK 17 0 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-2;Q9ULV3;A0A494C0L7;Q9ULV3-3;Q9ULV3-4 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 T(1)PAPEPEPCEASELPAK 233.14 4.703600000000001e-19 226240000.0 93478.0 69649.0 77373.0 66036.0 55361.0 78775.0 69100.0 88052.0 80222.0 92535.0 True False 92974.72483438226 71967.22486129044 88266.445861828 74396.15082917639 62410.89519964501 73329.46966640388 65757.36901236571 94622.88735899626 60452.36301972631 86629.33707680072 1.0732475622196678 0.8307488812651115 1.0188978565491724 0.8587870268846791 0.7204360243956964 0.8464738637142528 0.7590658226331447 1.0922730168777457 0.6978278382314369 1.0 16.402568056785565 7.12294718740229 1.4181843587605696 0.8725137700457658 199.99999999881678 0.18228782449237424 0.12543479072468433 2493.834479297408 6.29567747351592 0.03269424295180989 1614212.9537379507 13272330.490770211 -7.12294718740229 199.127486228771 T(ph)PAPEPEPCEASELPAKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPAPEPEPCEASELPAKR 18 1 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-2;Q9ULV3;A0A494C0L7;Q9ULV3-3;Q9ULV3-4 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR 180.86 4.479e-14 2959870000.0 1493260.0 1366870.0 1213180.0 1115330.0 1083410.0 1505810.0 1375620.0 1299720.0 1711860.0 1520130.0 True False 1485220.4540767837 1412365.441659637 1383985.198850405 1256530.6636426377 1221375.8416258278 1401716.8989954623 1309076.0052212828 1396711.7062444321 1289995.0407487813 1423114.0019512316 1.0436412346729762 0.9924471544255363 0.9725048007066355 0.8829444878764515 0.858241743072726 0.9849645896769819 0.9198672793791705 0.9814475188420609 0.9064593834225994 1.0 20.440619806355038 4.332608463554506 2.0946858573642912 0.9342037042883533 1.0381315776147837 0.38206595653132014 0.04399801837594288 0.3802193120750348 3.0202872396448504 0.011656244582821537 0.05477575625247039 21508.417776113467 -4.332608463554506 0.10392787332643039 T(ph)PASINATPANINLADLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPASINATPANINLADLTR 19 0 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 T(0.999)PAS(0.001)INATPANINLADLTR 255.93 6.7479e-30 157520000.0 31732.0 34699.0 37747.0 31779.0 28164.0 32825.0 26021.0 26570.0 33509.0 21151.0 True False 31561.15843775662 35853.93523901156 43061.44949719434 35802.21814162572 31750.518458893486 30555.885011738577 24762.264820126915 28552.78831972619 25251.155947595547 19801.125071717863 1.593907332206882 1.810701922701457 2.174697111463602 1.8080900964946873 1.6034704262457822 1.5431388318122308 1.2505483769452623 1.4419780803520308 1.2752384450953251 1.0 14.273294784060143 2.666241822082378 1.1202099534715164 1.2610065779585258 1.8712456049993293 0.7071037485096188 0.17190969045706303 0.2866171370377195 0.7443582829541374 0.09292184351676025 0.08017874155549753 463.70504621801604 -2.666241822082378 0.6102390270408036 T(ph)PDDFLNSVDEMDTGDTINQSTLPSQQNR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPDDFLNSVDEMDTGDTINQSTLPSQQNR 29 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8;P46937-4;H0YCI3 P46937-6 YAP1 Transcriptional coactivator YAP1 1 T(1)PDDFLNSVDEMDTGDTINQSTLPSQQNR;T(1)PDDFLNSVDEMDTGDTINQSTLPSQQNR;T(1)PDDFLNSVDEMDTGDTINQSTLPSQQNR;T(0.999)PDDFLNS(0.001)VDEMDTGDTINQSTLPSQQNR 179.81 4.2477e-17 456349000.0 101459.0 87622.0 85891.0 83726.0 77844.0 89983.0 72544.0 84132.0 85216.0 93776.0 True False 100912.75601715466 90538.44530138238 97983.70622204476 94325.70301537991 87756.97198246355 83762.68700719789 69034.76957500806 90410.3570536396 64215.65863589787 87791.1353943271 1.1494640724702994 1.0312937051641413 1.1161002279095287 1.0744331143651558 0.9996108557918736 0.9541132670282162 0.7863523949761898 1.0298346939875862 0.7314594844623387 1.0 16.421787652245218 2.942133686053933 1.7976246538549276 0.8995426081186486 1.0930870550394265 0.5201073394304513 0.08802796998773998 0.2831104857093988 1.8393570815285742 0.029436342635046873 0.033368883808528205 875.2531572675668 -2.942133686053933 0.19354444692077788 T(ph)PDSTFSETFK ddPTM_BT-474_Trastuzumab_2h_R1 5 TPDSTFSETFK 11 0 Q9NZI5-3;Q9NZI5;B7Z1S6 Q9NZI5-3 GRHL1 Grainyhead-like protein 1 homolog 1 T(0.858)PDS(0.107)T(0.035)FSETFK;T(0.794)PDS(0.206)TFSETFK;T(0.994)PDS(0.006)TFSETFK;T(0.982)PDS(0.018)TFSETFK;T(0.999)PDS(0.001)TFSETFK 228.12 3.9181e-11 5187160000.0 5247130.0 5182370.0 4762730.0 4484100.0 4352740.0 5424780.0 5977140.0 5149340.0 6619410.0 5462390.0 True False 5218880.035090948 5354862.052641182 5433280.985608719 5051786.600234872 4907035.638288732 5049777.727158549 5688002.903307842 5533609.898618696 4988145.101049669 5113775.5936126355 1.020553197838715 1.0471445128193884 1.0624793532972316 0.987878038008709 0.9595719539234118 0.9874852024140397 1.11229028321314 1.0820986954395213 0.9754329281245964 1.0 22.285957421908897 2.2733817170158206 24.99992480171302 1.055061452336319 1.0114732161730349 0.07674865546735743 0.04600113732073367 339.373249996811 243652.89773551756 0.0169753423483598 0.014201966816921686 187.66432325277336 -2.2733817170158206 -0.04358823616328422 T(ph)PDVDNPEQPFDALNIEECSLTQQNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPDVDNPEQPFDALNIEECSLTQQNK 26 0 Q9Y485;F5H269 Q9Y485 DMXL1 DmX-like protein 1 1 T(0.999)PDVDNPEQPFDALNIEECSLTQQNK;T(1)PDVDNPEQPFDALNIEECSLTQQNK 170.97 2.3786e-11 65044000.0 102105.0 97431.0 83578.0 68431.0 77389.0 104016.0 88343.0 85353.0 113953.0 104591.0 True False 101555.27802493196 100673.93193671678 95345.05592700106 77094.35758361156 87244.0304294599 96825.61874732662 84069.51158696713 91722.4742737521 85870.81004196958 97915.91283513977 1.0371682710645793 1.0281672204416934 0.9737442379517286 0.7873526922372129 0.891009723581416 0.9888649959312653 0.8585888560168385 0.9367473745374206 0.8769852371856 1.0 16.579255718467078 3.9893754897938685 13.110344930526571 0.9031901723200195 1.0247706225728463 0.43493872680168433 0.058520354607146254 0.88740275239165 1098.6296818731723 0.014365624575356149 0.028119972974252273 9758.32975551302 -3.9893754897938685 0.12158045025282682 T(ph)PELPEPSVK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPELPEPSVK 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(1)PELPEPSVK;T(1)PELPEPSVK;T(1)PELPEPSVK 174.4 3.4855e-05 1494780000.0 1114140.0 1099970.0 960570.0 896410.0 910220.0 1145570.0 1140770.0 1089430.0 1470650.0 1136120.0 True False 1108141.59403259 1136581.836504094 1095809.9065758851 1009895.4140890125 1026131.1217033801 1066379.4422817158 1085586.5969354047 1170728.7986134472 1108228.013200376 1063611.8489187323 1.041866537270271 1.068605843061586 1.0302723758576828 0.9494962049507742 0.9647608972639267 1.002602070826681 1.020660495686478 1.1007105644823438 1.0419477879331642 1.0 20.020540323728177 1.9753483280402089 20.64956342691287 1.0592286167041138 1.0087170434391672 0.13259240259374894 0.04019233891883428 129.4602410972415 108441.079448156 0.01788551860107199 0.01164057572231955 94.48183687222196 -1.9753483280402089 -0.050511573264946596 T(ph)PENVTQSKTSVFQTEISEENIHHEQSSVFNPFQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPENVTQSKTSVFQTEISEENIHHEQSSVFNPFQK 35 1 Q99698 Q99698 LYST Lysosomal-trafficking regulator 1 T(0.326)PENVT(0.299)QS(0.06)KT(0.06)S(0.06)VFQT(0.06)EIS(0.06)EENIHHEQS(0.06)S(0.013)VFNPFQK 40.719 0.082415 635480000.0 63144.0 37979.0 30192.0 26797.0 25778.0 45346.0 42897.0 33765.0 75198.0 44507.0 True False 62804.03971995795 39243.10805620966 34442.77116643158 30189.49745244169 29060.675501823447 42211.33775300223 40821.90822754635 36284.71575519589 56666.46050157533 41666.525155640236 1.507302072475713 0.9418377920794164 0.8266293154462676 0.7245503996234985 0.6974585807976746 1.013075546744705 0.9797291248804905 0.8708361357146713 1.3599996709565931 1.0 15.346601168820552 1.2571664146296866 24.993818118778158 1.1799999789457698 0.9269892378373091 0.14158391561364492 0.22778650321330657 371.63426376971927 499232.3830675321 0.15217086583211553 0.05535227835162105 18.078667386326604 -1.2571664146296866 -0.25301074110846067 T(ph)PESFLGPNAALVDLDSLVSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TPESFLGPNAALVDLDSLVSR 21 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 T(0.96)PES(0.04)FLGPNAALVDLDSLVSR;T(0.852)PES(0.148)FLGPNAALVDLDSLVSR;T(0.982)PES(0.018)FLGPNAALVDLDSLVSR 149.44 9.024700000000002e-07 2180890000.0 61231.0 57528.0 57480.0 59741.0 60943.0 70092.0 60721.0 53960.0 62350.0 50672.0 True False 60901.339099403616 59442.78470358963 65572.68437488364 67304.20447461717 68703.72981253885 65246.70501882034 57783.693253254125 57986.76920332804 46984.67794719573 47438.069577518196 1.2838072805615581 1.2530607849978932 1.3822797799082402 1.418780424119828 1.448282580307586 1.3754080973341714 1.2180869451028191 1.2223678096464758 0.990442451930267 1.0 15.533757682274713 1.4989668613464786 1.3816010482579462 0.9815597200032646 1.358938759998982 0.8134685066083505 0.06592225723367923 0.1722566850308619 0.6292061463286038 0.06348129773596244 0.021379227638413902 31.54763891289349 -1.4989668613464786 0.3773790399957173 T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPESFLGPNAALVDLDSLVSRPGPTPPGAK 30 1 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 T(0.996)PES(0.004)FLGPNAALVDLDSLVSRPGPTPPGAK;T(0.983)PES(0.017)FLGPNAALVDLDSLVSRPGPTPPGAK 217.8 2.5611e-34 1607920000.0 296108.0 337812.0 315763.0 298803.0 322451.0 362136.0 315262.0 304610.0 436684.0 370643.0 True False 294513.78742869175 349055.8682083333 360219.68573880295 336631.42916303826 363513.22353318613 337102.39069644973 300011.5726422063 327341.5449782383 329069.07946580945 346988.2464165625 0.8487716528447632 1.0059587660767293 1.0381322406706421 0.9701522533962409 1.047624025560754 0.9715095372186044 0.8646159509450349 0.9433793460118006 0.9483580002037275 1.0 18.404527269448632 2.4617822463182626 24.997864930576693 0.9309963488526962 0.9882646897323057 0.09455230719722818 0.05977656569991475 422.98472261373485 689330.8774214801 0.02020606779680302 0.016910946948377206 289.58912342432603 -2.4617822463182626 0.057268340879609525 T(ph)PESFLGPSASSLVNLDSLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPESFLGPSASSLVNLDSLVK 21 0 Q9H201 Q9H201 EPN3 Epsin-3 1 T(0.834)PES(0.14)FLGPS(0.02)AS(0.002)S(0.002)LVNLDSLVK 141.22 5.8079e-07 32991000.0 33150.0 27108.0 31027.0 28088.0 25409.0 36273.0 33189.0 33227.0 39843.0 38984.0 True False 32971.524083311255 28010.27339286795 35395.33190848145 31643.93792007248 28644.6855390578 33765.53288745752 31583.521275707793 35706.567463287276 30024.226518847176 36496.00774411845 0.9034282410964475 0.7674886960035232 0.9698411989784176 0.8670520387307867 0.784871751997972 0.9251842865717016 0.8653966071343151 0.9783691332387336 0.8226715297013757 1.0 15.155451037438839 2.2023011078432897 1.906126164477119 0.9274213656058535 0.8620774309156587 0.12897845035234545 0.0719316396289221 0.6870699912960749 4.972971289336253 0.035024580123372645 0.02176345137001897 159.33130302229006 -2.2023011078432897 -0.06534393469019484 T(ph)PIQAGGYGAFPVH ddPTM_BT-474_Trastuzumab_2h_R1 1 TPIQAGGYGAFPVH 14 0 P15056;A0A2U3TZI2 P15056 BRAF Serine/threonine-protein kinase B-raf 1 T(1)PIQAGGYGAFPVH 96.673 0.036645 126390000.0 44221.0 46506.0 43738.0 46126.0 37715.0 45524.0 39108.0 33883.0 43999.0 39458.0 True False 43982.91904941496 48053.924096529314 49895.93022248883 51965.54687059468 42517.78169568128 42377.033031969135 37216.19663293199 36411.52151438778 33156.03600639401 36939.756658306644 1.1906661826783993 1.3008727843290604 1.350737924021184 1.4067647318653678 1.1510032967724033 1.1471930750372124 1.0074835353460074 0.9857000914000315 0.8975705041342824 1.0 15.172886742106655 2.547229018296405 1.308270108518515 0.9578291938052172 1.3092626242119236 0.8308150653028522 0.06680523811124343 0.1680957961961408 0.584292865920585 0.03449006397794535 0.027088157941292535 352.5567372265174 -2.547229018296405 0.3514334304067064 T(ph)PLSEAEFEEIMNR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPLSEAEFEEIMNR 14 0 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 T(1)PLSEAEFEEIMNR;T(0.994)PLS(0.006)EAEFEEIMNR;T(1)PLSEAEFEEIMNR;T(1)PLSEAEFEEIMNR 188.92 8.6955e-06 517824000.0 71750.3 67027.4 53737.3 46551.4 59046.6 83770.4 79492.2 55562.100000000006 65950.7 63698.1 True False 71364.00435700773 69258.36649008103 61303.04474701519 52444.802466977446 66565.83451338226 77979.54942231049 75646.85859630645 59708.426040627004 49698.03367910381 59632.83272331291 1.1967233669432682 1.1614133242911517 1.028008262351913 0.879461868100635 1.116261486725566 1.3076613312019487 1.2685437726444446 1.0012676459235943 0.8334005179612207 1.0 15.86381924991556 1.51793397577784 5.986047972875854 0.9162469030619953 1.1299574142179665 0.362539912015871 0.11983329787250731 0.16165295254071532 12.538412343012565 0.075315925691285 0.03383444900838389 32.95596066116788 -1.51793397577784 0.21371051115597117 T(ph)PLTQDPASITDNLLQLPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPLTQDPASITDNLLQLPAR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 T(0.99)PLT(0.01)QDPASITDNLLQLPAR 82.87700000000002 0.037389 39296000.0 35352.0 36328.0 21820.0 27344.0 20155.0 31891.0 23605.0 30709.0 40081.0 23912.0 True False 35161.66875997646 37537.15551926028 24892.06633716007 30805.747596356534 22721.619781955604 29686.45023333908 22463.135970143172 33000.661517142325 30203.57460788376 22385.91568790683 1.570704957982633 1.676820195456126 1.1119521168663695 1.3761218449061796 1.0149962189945227 1.3261217743876388 1.0034495029514499 1.474170723110948 1.3492222086854428 1.0 14.450303711924617 4.244263555380267 24.999548572184192 1.229198128532236 1.6237627237881052 0.49982438327252365 0.16557529714292793 108.3126014852448 474788.04926809564 0.03882764349338367 0.10038140281416898 17549.451824878186 -4.244263555380267 0.3945645952558692 T(ph)PNGPNIDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPNGPNIDKK 10 1 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3;Q5TBM3 Q92598-2 HSPH1 Heat shock protein 105 kDa 1 T(1)PNGPNIDKK 53.252 0.084866 310710000.0 173080.0 133850.0 114620.0 108310.0 114910.0 157770.0 142230.0 148060.0 259320.0 176190.0 True False 172148.1565109959 138305.1163359665 130757.49970510033 122022.03489472544 129543.10737506933 146863.73125063215 135349.7915286366 159108.98903344604 195414.06070997278 164945.4033561519 1.0436674985073198 0.8384902732774955 0.7927320012838874 0.7397722665314543 0.7853696116366363 0.8903778357104163 0.8205732853093691 0.9646160838437928 1.1847196510716498 1.0 17.331629048352468 1.5191429413493471 3.628320682476227 1.0916648886687694 0.8384397391386029 0.556125245970166 0.08839193599444696 0.13926989523620187 3.952279033252616 0.058958179534130094 0.02307735048716789 33.047829498658594 -1.5191429413493471 -0.2532251495301665 T(ph)PNKFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPNKFK 6 1 F8W8D3;Q14493;E7EUV9;H0YAE8;Q14493-2;H7C4H8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 T(1)PNKFK 85.064 0.089142 842230000.0 3211400.0 2416900.0 2009200.0 2040700.0 1996300.0 2553400.0 2999000.0 2881600.0 4789800.0 3432700.0 True False 3194110.17922008 2497345.055453095 2292077.895720531 2299052.410762315 2250516.972002879 2376889.4680570667 2853926.912707455 3096639.6244683103 3609417.9700317276 3213622.1471176757 0.9939283565384013 0.7771122245012484 0.7132381439978296 0.7154084411648564 0.7003054089670704 0.7396294147987866 0.8880717091358005 0.9635979224395476 1.123161904167559 1.0 21.615768878385147 1.788078729915252 1.910730359771932 1.0550697069436668 0.766014103957671 0.6379650335460902 0.08669361036555681 0.20046769593064484 1.4318122704546596 0.06058305038341479 0.02593201285324967 61.38732794564113 -1.788078729915252 -0.28905560298599575 T(ph)PPFSESEEQLHLHDAGMKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPPFSESEEQLHLHDAGMKPR 21 1 Q8IVM0-2 Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 1 T(0.998)PPFS(0.002)ESEEQLHLHDAGMKPR;T(1)PPFSESEEQLHLHDAGMKPR;T(1)PPFSESEEQLHLHDAGMKPR;T(1)PPFSESEEQLHLHDAGMKPR 238.2 1.0218999999999999e-29 4848870000.0 1667238.0 1667675.0 1620240.0 1467239.0 1569122.0 1740680.0 1711590.0 399978.0 2026120.0 1204718.0 True False 1658261.7758555543 1723182.5542441744 1848355.7086214584 1652991.3069605948 1768940.3857852537 1620350.888719974 1628793.8527912449 429826.3894071306 1526809.8746170383 1127831.8658290294 1.4703093839582415 1.5278718454878235 1.6388574969574896 1.4656362859064451 1.568443346371463 1.4366954311305182 1.444181444185367 0.3811085698409314 1.35375663773672 1.0 20.105120579955972 1.8927464588459575 8.700366046322044 0.8549595641760865 1.5167233011250316 0.5858217884224015 0.22878312828317648 0.1902661748213748 14.116179717643487 0.09029090469765837 0.05687923251867143 78.11716233843745 -1.8927464588459575 0.6617637369489451 T(ph)PPGEVVWVER ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPGEVVWVER 11 0 A0A494C030 A0A494C030 1 T(1)PPGEVVWVER 98.407 0.06197 198500000.0 24779.0 27186.0 19886.0 18538.0 21634.0 25986.0 19111.0 21107.0 27092.0 23425.0 True False 24645.592617205708 28090.869575715966 22685.775947789414 20884.908899256032 24388.96166523581 24189.648984464235 18186.527918890337 22682.11151917431 20415.539614200916 21929.996444848515 1.1238302148924928 1.2809336128421798 1.0344632752149139 0.952344381440245 1.112127935203789 1.1030393481959058 0.8292991731497731 1.0342961785797493 0.9309413097965479 1.0 14.420617957680435 4.12137518316232 5.976644548729031 0.9972304923230747 1.200456800241368 0.47808624862182025 0.0854456038375797 0.16155266836817864 7.73447714685423 0.021057208639730162 0.046736274608326724 13224.375829890525 -4.12137518316232 0.20322630791829333 T(ph)PPGLQHEYAAPADYFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPPGLQHEYAAPADYFR 17 0 Q5JRG1;H7BYF2;Q9BVL2-2;Q9BVL2-3;Q9BVL2 Q5JRG1 NUPL1 Nucleoporin p58/p45 1 T(1)PPGLQHEYAAPADYFR;T(1)PPGLQHEYAAPADYFR 100.76 0.0046164 321390000.0 102191.0 104617.0 85975.0 82407.0 94009.0 115121.0 82510.0 85206.0 97995.0 88836.0 True False 101640.81501048736 108099.11360268807 98079.53269190363 92839.71775061986 105980.48891500202 107162.95623568495 78518.67608119105 91564.50438730119 73845.44531572494 83166.41042367388 1.2221378137243089 1.2997929458780264 1.179316651906196 1.1163126709168683 1.2743184222465127 1.2885365099896182 0.9441152465423731 1.100979396860403 0.8879239219239446 1.0 16.343713344215292 2.238069351839051 24.99999994223811 1.0016829688220898 1.2277720889195836 0.7359129294662035 0.07208785657730744 7.357392357282099 374379.59862244176 0.026438971053547332 0.02073393415008117 173.00926130701077 -2.238069351839051 0.2260891200974937 T(ph)PPGPPPPDDDEDDPVPLPVS(ph)GDKEEDAPHREDYFEPISPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDYFEPISPDR 42 2 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 2 T(1)PPGPPPPDDDEDDPVPLPVS(0.617)GDKEEDAPHREDY(0.248)FEPIS(0.135)PDR 110.83 8.547100000000001e-05 213040000.0 106860.0 84826.0 79959.0 77336.0 79887.0 88952.0 84632.0 90363.0 106100.0 100580.0 True False 106284.677633262 87649.3821316001 91216.53218391299 87126.72967056121 90060.13592265378 82802.95761048493 80538.02683436379 97106.34591401662 79953.07666716067 94160.89828912976 1.1287559864489085 0.9308469197316337 0.9687304798625027 0.9252962880943479 0.9564494132810393 0.8793773117608837 0.8553234760682116 1.0312810060057265 0.8491112353416312 1.0 16.52284046321267 4.739278707937381 24.092505529129028 0.9347143960051195 1.1287560790604159 0.5185667612109832 0.056580470326740774 28.162154631536325 944543.5823803238 0.012929016302633878 0.0777038824429404 54862.89338990566 -4.739278707937381 0.19404168305529634 T(ph)PPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDYFEPIS(ph)PDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDYFEPISPDR 42 2 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 2 T(1)PPGPPPPDDDEDDPVPLPVS(0.481)GDKEEDAPHREDY(0.002)FEPIS(0.517)PDR 71.109 0.03897 146550000.0 41447.0 36465.0 27776.0 36176.0 33825.0 34892.0 37523.0 34905.0 52786.0 41961.0 True False 41223.85395719461 37678.71548144202 31686.61936668 40755.87789079118 38132.41325351766 32479.998166933205 35707.86913821998 37509.7883439986 39777.5975961616 39283.013055380514 1.049406620084817 0.959160526416933 0.8066239552961162 1.0374936829141452 0.970709991103769 0.8268204407117006 0.9089900789402189 0.9548602672386141 1.0125902903650448 1.0 15.261617969928738 1.3605146549976506 3.992014793752776 1.0060518202365056 0.9337671871611121 0.11865579125233372 0.0738205930648297 0.47135527555636253 11.790242260629832 0.05665254284969614 0.018977524529200516 22.935840247106647 -1.3605146549976506 -0.07228463307539357 T(ph)PPKS(ph)PSSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPPKSPSSAK 10 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 2 T(1)PPKS(0.589)PS(0.364)S(0.047)AK;T(1)PPKS(0.981)PS(0.009)S(0.01)AK;T(1)PPKS(0.891)PS(0.095)S(0.014)AK 98.942 0.011534 1773930000.0 4976900.0 3151880.0 2586210.0 2386640.0 2616540.0 3991900.0 4058500.0 3793400.0 6617000.0 3961600.0 True False 4950104.923385573 3256788.4204483083 2950325.8882597005 2688788.3792922855 2949740.8595523797 3715949.348921831 3862174.8500244026 4076482.7704948992 4986329.0132573275 3708767.296303605 1.3347035626417338 0.8781323173589867 0.7955004055391084 0.7249816891914745 0.7953426634483862 1.001936506673089 1.0413634885838465 1.099147626371108 1.3444707135513791 1.0 21.822508319235514 2.083369893028911 1.6951292530582642 1.1621180923310148 0.8924071729448493 0.2531299227493924 0.1763507163312497 0.489141465216934 2.6720404233298694 0.10711790191631626 0.05704137299478197 121.16296515127199 -2.083369893028911 -0.26971091938616554 T(ph)PPKSYSTAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPKSYSTAR 10 1 Q05519-2;Q05519;Q5T757;Q5T760 Q05519-2;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 T(0.993)PPKS(0.007)YSTAR 81.44800000000002 0.03392 1380500000.0 1231400.0 1546800.0 1411300.0 1356100.0 1297300.0 1580600.0 1444500.0 1444200.0 2045300.0 1671400.0 True False 1224770.2792214022 1598284.3029396539 1609998.7727604934 1527782.1209559334 1462503.4653004722 1471336.8423321843 1374624.0164741285 1551973.5374990057 1541263.2206158706 1564729.8210424671 0.78273594760623 1.021444265614387 1.028930842314916 0.976387169471904 0.9346683661503372 0.9403136711179558 0.8785056678719878 0.9918476126856438 0.985002778044479 1.0 20.57748214054466 5.955035135474417 0.007273610019331597 1.8600048355184609 0.00011755215084729658 0.08364407576089505 0.06820533920480511 60429.52833075232 49.65214958520102 5894.8325913204835 6830.482296429868 901644.079843018 -5.955035135474417 -1.8598872833676137 T(ph)PPPPT(ph)LSPAAITVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPPPTLSPAAITVGR 16 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 2 T(1)PPPPT(0.932)LS(0.068)PAAITVGR 73.953 0.052307000000000006 72942000.0 32215.0 27059.0 20357.0 28509.0 30747.0 23368.0 25390.0 22652.0 31566.0 22296.0 True False 32041.55801942297 27959.64245748907 23223.088653784016 32118.236476906375 34662.448198253 21752.62516235514 24161.788700780984 24342.407264525318 23786.982262729452 20873.050191434046 1.5350683165880707 1.3395091853400154 1.1125872089032003 1.5387418792336909 1.6606316700411083 1.0421392639242566 1.1575590763776624 1.1662122709078253 1.139602599743244 1.0 14.349353817350332 2.717319893086358 24.97118006837684 1.1204671493903373 1.41946963463574 0.5697234902068807 0.14518980391770672 695.6869401182616 817867.8422585473 0.04955335262357018 0.046759084260827435 521.578754675928 -2.717319893086358 0.29900248524540274 T(ph)PPPPTLSPAAITVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPPPTLSPAAITVGR 16 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 T(0.997)PPPPT(0.003)LS(0.001)PAAITVGR 88.561 0.06805399999999999 213880000.0 24320.0 31781.0 26327.0 41297.0 26072.0 37169.0 33674.0 26791.0 27347.0 41916.0 True False 24189.063822206 32838.8113729798 30033.612761613807 46525.1959657232 29392.11465914894 34599.59451641465 32045.059972827865 28790.280461941482 20607.698281025856 39240.884993906926 0.6164250328697205 0.8368519562715978 0.7653653266555338 1.185630649587728 0.7490176295390066 0.8817230937015578 0.8166242932034692 0.7336807125122651 0.5251588562344016 1.0 15.260069958362543 1.785138453130397 3.763195402461992 0.7220871226733077 0.8469369957663128 0.036866410118726045 0.17369226801954893 0.5533731540044975 14.872649179556062 0.08828846663415069 0.04553006450031484 60.97312486505561 -1.785138453130397 0.1248498730930051 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 3 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 T(0.997)PPRDLPT(0.003)IPGVT(0.489)S(0.418)PS(0.072)S(0.02)DEPPMEASQSHLR;T(1)PPRDLPT(0.013)IPGVT(0.512)S(0.453)PS(0.017)S(0.005)DEPPMEASQSHLR;T(0.997)PPRDLPT(0.004)IPGVT(0.823)S(0.136)PS(0.021)S(0.019)DEPPMEASQSHLR 115.78 0.0001595 654350000.0 185971.0 223613.0 200804.0 222303.0 220943.0 254416.0 233003.0 224622.0 262640.0 240662.0 True False 184969.75279932053 231055.82352808677 229075.457780343 250446.53700675987 249078.78141823987 236828.8207508448 221731.75473210236 241384.43424740428 197915.89119569355 225302.7451188957 0.8209831296183683 1.025534879329389 1.0167450807554803 1.1116000245562716 1.1055292792229283 1.051158167761634 0.9841502579788415 1.0713781322106042 0.8784442066662362 1.0 17.781505366107314 4.741678929888598 4.713346881922978 1.0352755441113877 0.8079291379518566 0.4787332116586128 0.0641230105396068 0.1546289312088189 9.526032567083522 0.01510042286429526 0.11617704935235629 55166.9444091514 -4.741678929888598 -0.22734640615953106 T(ph)PPRDLPTIPGVTS(ph)PSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 T(0.995)PPRDLPT(0.005)IPGVT(0.462)S(0.534)PS(0.003)S(0.001)DEPPMEASQSHLR 142.91 7.220999999999998e-07 267400000.0 27133.0 35856.0 41748.0 46658.0 53277.0 49245.0 38529.0 36624.0 37096.0 45642.0 True False 26986.918942759705 37049.44528459029 47625.755519878934 52564.898016047475 60061.51015248076 45840.809060260966 36665.2050749268 39357.06885290374 27954.187860933 42729.08848391783 0.6315819012361312 0.8670778291592807 1.1145979755174062 1.230190015306121 1.4056351839821348 1.0728244080730696 0.8580853553364864 0.921083745273826 0.6542191479571174 1.0 15.382930920678985 2.2386390297071883 24.741397052940766 0.8594226253442423 1.0719646812724979 0.16914171561674607 0.2097092180390988 3.412382216495047 1077058.0620453637 0.08221530171043591 0.06473078175744382 173.23635195949882 -2.2386390297071883 0.2125420559282556 T(ph)PPRDLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 T(1)PPRDLPTIPGVTSPSSDEPPMEAS(0.54)QS(0.418)HLRNS(0.042)PEDK;T(1)PPRDLPTIPGVTSPSSDEPPMEAS(0.404)QS(0.284)HLRNS(0.312)PEDK 242.39 1.5761e-49 839460000.0 146287.0 164266.0 161154.0 165558.0 171973.0 220306.0 208789.0 188642.0 313912.0 214514.0 True False 145499.4070460135 169733.4945091061 183843.08242432133 186517.625824956 193872.74218616966 205076.76476454182 198689.0784185649 202719.4239446663 236552.59380529448 200823.53286532464 0.7245137308862486 0.8451872750537259 0.9154459131421084 0.9287637915922811 0.9653885648759287 1.0211789516822685 0.9893714923928206 1.0094405822479633 1.1779127198401111 1.0 17.615568811249496 6.002324121879589 0.36649815622555265 1.0583839107748667 9.307301191709998e-09 0.8041199989516202 0.05001572501244565 6.3656251544278915 0.33048006570230526 0.04041989673797171 3.578280046792548 1005365.8331855052 -6.002324121879589 -1.0583839014675656 T(ph)PPRDLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 T(0.997)PPRDLPT(0.003)IPGVTSPSSDEPPMEAS(0.519)QS(0.343)HLRNS(0.138)PEDKR;T(0.988)PPRDLPT(0.012)IPGVTSPSSDEPPMEAS(0.477)QS(0.39)HLRNS(0.133)PEDKR 138.27 1.1753e-09 377030000.0 93398.0 128164.0 104443.0 115737.0 105285.0 127559.0 134015.0 117460.0 166234.0 147644.0 True False 92895.15554549328 132429.86126322593 119147.66656516981 130389.29233321811 118692.4206769138 118741.14657158765 127532.18246298398 126225.46164979461 125267.85812147785 138221.23351561208 0.6720758683939887 0.9581007048983395 0.8620069690791183 0.9433376408009746 0.8587133659424874 0.8590658869946769 0.9226670839149994 0.9132132483504241 0.9062851989909991 1.0 17.07661973368396 4.74617760352442 24.801257632912993 0.9076567037450287 0.672075741638703 0.728677929936299 0.044094783955452785 406.4638888317023 1323430.1913350222 0.009650357676769264 0.10255126933164112 55741.365509694224 -4.74617760352442 -0.23558096210632573 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 T(0.988)PPRDLPT(0.012)IPGVTSPSSDEPPMEAS(0.188)QS(0.533)HLRNS(0.279)PEDK 170.18 1.4381e-16 410890000.0 99652.0 121140.0 115490.0 123530.0 149650.0 145930.0 155080.0 127480.0 232880.0 157760.0 True False 99115.484704378 125172.07166932366 131749.98814292476 139168.8853341838 168707.04045495688 135842.20258226982 147578.1879368695 136993.2049303236 175489.84443212432 147691.62173486876 0.6710975446007826 0.8475231715853763 0.8920613545664634 0.9422937042699369 1.1422925584622148 0.919769185188645 0.9992319550921928 0.9275624664495147 1.1882180070251922 1.0 17.172228461511796 4.843272980217468 0.8426950050419314 1.0137205519205164 0.4324800205767989 0.6383471416219828 0.08325948238880337 1.7834272852480897 0.871289410515014 0.027907383408349553 1.0049368188127206 69706.452344066 -4.843272980217468 -0.5812405313437174 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_BT-474_Trastuzumab_2h_R1 27 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.988)PPRDLPT(0.011)IPGVT(0.001)SPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.917)PPRDLPT(0.083)IPGVTSPSSDEPPMEASQSHLR;T(0.991)PPRDLPT(0.001)IPGVT(0.006)S(0.001)PSSDEPPMEASQSHLR;T(0.981)PPRDLPT(0.019)IPGVTSPSSDEPPMEASQSHLR;T(0.995)PPRDLPT(0.005)IPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.996)PPRDLPT(0.002)IPGVT(0.002)SPSSDEPPMEASQSHLR;T(0.991)PPRDLPT(0.009)IPGVTSPSSDEPPMEASQSHLR;T(0.983)PPRDLPT(0.017)IPGVTSPSSDEPPMEASQSHLR;T(0.992)PPRDLPT(0.008)IPGVTSPSSDEPPMEASQSHLR;T(0.944)PPRDLPT(0.056)IPGVTSPSSDEPPMEASQSHLR;T(0.894)PPRDLPT(0.101)IPGVT(0.003)S(0.002)PSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.978)PPRDLPT(0.022)IPGVTSPSSDEPPMEASQSHLR;T(0.476)PPRDLPT(0.452)IPGVT(0.06)S(0.011)PSSDEPPMEASQSHLR;T(0.498)PPRDLPT(0.498)IPGVT(0.002)S(0.002)PSSDEPPMEASQSHLR;T(0.998)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;T(0.914)PPRDLPT(0.084)IPGVT(0.002)SPSSDEPPMEASQSHLR;T(0.997)PPRDLPT(0.003)IPGVTSPSSDEPPMEASQSHLR;T(0.972)PPRDLPT(0.028)IPGVTSPSSDEPPMEASQSHLR;T(0.505)PPRDLPT(0.408)IPGVT(0.06)S(0.025)PS(0.002)S(0.001)DEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.982)PPRDLPT(0.018)IPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR 212.17 5.2425e-26 178287410000.0 1394854.8 1825839.0 1659268.0 1934816.5 1927224.5 1879715.5 1655608.2 1638031.8 2178106.9 1790192.6 True False 1387345.0567397382 1886610.9473720177 1892878.5117840008 2179764.0705187963 2172645.116520441 1749775.1918593333 1575520.1063284893 1760270.0506729416 1641341.6396321566 1675940.9756070068 0.8278006665701682 1.1257025007630168 1.129442229371128 1.3006210255879151 1.296373290075764 1.0440553798295817 0.9400809033610827 1.0503174492976353 0.9793552777344567 1.0 20.676539909472087 2.491976237145326 24.308682393820302 0.9993269354780226 1.1468006859067443 0.22776251314496376 0.12451890120041283 729.5003948983551 1193755.4971176249 0.04299051695921772 0.039209879535152925 310.4389723708834 -2.491976237145326 0.14747375042872168 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 T(0.985)PPRDLPT(0.015)IPGVTSPSSDEPPMEAS(0.126)QS(0.331)HLRNS(0.543)PEDKR;T(0.975)PPRDLPT(0.025)IPGVTSPSSDEPPMEAS(0.335)QS(0.171)HLRNS(0.494)PEDKR;T(0.997)PPRDLPT(0.003)IPGVTSPSSDEPPMEAS(0.227)QS(0.186)HLRNS(0.587)PEDKR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEAS(0.204)QS(0.172)HLRNS(0.625)PEDKR 212.58 2.2714999999999997e-31 2384941000.0 401447.0 435443.0 405112.0 496710.0 503878.0 566220.0 595889.0 562173.0 780301.0 551760.0 True False 399285.6539569549 449936.4570241479 462148.24830337294 559593.4350711767 568043.8765811084 527078.5441385112 567063.5725529614 604125.2039166524 588006.2740477106 516546.20441449765 0.7729911681560859 0.8710478427271544 0.8946890798030652 1.0833366507948168 1.099696158303947 1.0203899276270008 1.09779835319035 1.1695472713838349 1.1383420670261484 1.0 18.97853787657322 3.957565491065867 1.3317446721976587 1.104295238883881 0.784698345790282 0.8178703183459716 0.052583427522216564 0.19912739978254407 0.6385589599810115 0.01651561350170328 0.058672665312898505 9069.127155783786 -3.957565491065867 -0.31959689309359895 T(ph)PPSEEDSAEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPPSEEDSAEAER 13 0 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 T(0.998)PPS(0.002)EEDSAEAER;T(0.999)PPS(0.001)EEDSAEAER 141.65 0.0004434 700920000.0 30687.0 31662.0 30598.0 39270.0 37861.0 34845.0 28332.0 33497.0 38362.0 29860.0 True False 30521.784601646228 32715.850529916814 34905.932437416304 44241.577973556174 42682.37393027145 32436.24716630709 26961.472921249595 35996.71623431947 28908.199124463874 27954.309235567827 1.091845423345738 1.1703329978295658 1.2486780532928905 1.5826389269982442 1.5268620508770894 1.1603308417664866 0.9644836040858061 1.287698291200086 1.0341231786790983 1.0 14.770783075268426 2.496863734043731 24.45203751879885 1.1053260671381122 1.3274957846826263 0.34862555021213704 0.16141501156020066 786.1333480710398 973665.4284727892 0.05734480647017503 0.05333708424533684 313.9523470005262 -2.496863734043731 0.2221697175445141 T(ph)PPVPDSGSANGSFFAPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPPVPDSGSANGSFFAPSR 19 0 Q9NPA3 Q9NPA3 MID1IP1 Mid1-interacting protein 1 1 T(1)PPVPDSGSANGSFFAPSR;T(1)PPVPDSGSANGSFFAPSR;T(1)PPVPDSGSANGSFFAPSR;T(1)PPVPDSGSANGSFFAPSR;T(1)PPVPDSGSANGSFFAPSR;T(1)PPVPDSGSANGSFFAPSR 222.6 2.6787e-18 4286440000.0 64529.8 79415.0 67491.4 66855.8 87512.9 74929.9 75404.6 64241.7 68816.0 62343.1 True False 64182.37872673477 82058.28026761884 76993.6024742348 75319.73742512042 98657.14908540336 69750.17237901197 71756.99142445496 69035.74186674262 51857.2188871568 58364.30998338676 1.099685385555044 1.40596676789251 1.3191898010299583 1.2905102012952774 1.690367779786754 1.195082618107987 1.2294669712514443 1.1828417381511656 0.888509071758371 1.0 15.832798804307398 1.5756779756316786 1.4506119052585176 0.944667927041864 1.3463953591727125 0.4883364014917283 0.15080255490325922 0.3158519617618984 1.2890888684319661 0.12673944145873856 0.04420148057512674 37.64245809765247 -1.5756779756316786 0.4017274321308485 T(ph)PS(ph)PESHR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPSPESHR 8 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 T(1)PS(1)PESHR;T(1)PS(0.999)PES(0.001)HR;T(1)PS(1)PESHR;T(1)PS(1)PESHR 132.01 0.005202 1214750000.0 522579.0 584525.0 461933.0 568663.0 590499.0 554309.0 552072.0 484626.0 622740.0 574662.0 True False 519765.49272798543 603980.5612721757 526969.151206387 640655.6774936696 665695.5474882165 515990.9235330325 525366.1682401556 520791.2530009653 469274.0712884792 537986.5791671091 0.966130964702999 1.1226684543083512 0.9795209985018978 1.1908395158955618 1.2373831862475486 0.9591148618091375 0.9765414019314534 0.9680376298740296 0.872278397752955 1.0 19.037210657608 2.5867618609356144 14.957778818005858 0.9559116813505276 1.0990341836522484 0.42735283979031646 0.08341754454936634 1.383375645880271 183.80528946682423 0.02741749429076809 0.025848456517202 386.1551764142955 -2.5867618609356144 0.14312250230172074 T(ph)PS(ph)PPPPIPEDIALGK ddPTM_BT-474_Trastuzumab_2h_R1 6 TPSPPPPIPEDIALGK 16 0 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK 117.0 0.0020394 1408969000.0 1347389.0 1191464.0 951419.0 991980.0 992950.0 1355460.0 1261174.0 1220543.0 1563720.0 1304180.0 True False 1340134.8073329916 1231121.1589848015 1085370.5253178056 1117564.5662900002 1119396.2968242536 1261760.2406096319 1200166.1954674572 1311626.1164517708 1178362.1587744826 1220946.1158353274 1.0976199440350565 1.0083337364503697 0.8889585799412894 0.9153266895201209 0.9168269445358799 1.0334282768460923 0.9829804771083993 1.0742702724062505 0.9651221650910364 1.0 20.219568100417263 2.719261636906838 24.712638039293147 1.018197222328165 0.9607675901501391 0.1139782998933827 0.06156930150781588 1370.7642864432312 1755281.33590592 0.021062907525150925 0.0198861591217338 523.9159701184603 -2.719261636906838 -0.05742963217802588 T(ph)PSPAAEDAREPEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSPAAEDAREPEAK 15 1 Q92797 Q92797 SYMPK Symplekin 1 T(0.717)PS(0.283)PAAEDAREPEAK;T(0.5)PS(0.5)PAAEDAREPEAK 132.13 7.9735e-05 1570110000.0 1409390.0 1135770.0 1001800.0 944770.0 983750.0 1482420.0 1372460.0 1295970.0 1997430.0 1318870.0 True False 1401802.0008379489 1173573.4178625369 1142844.732198302 1064377.7851305502 1109024.7313569267 1379943.7946413262 1306068.8664936558 1392681.8622023172 1505190.1406907314 1234698.587458584 1.1353394383671553 0.9504938531420346 0.9256062522519383 0.8620547524245491 0.8982149510996563 1.1176361653427536 1.0578038071477633 1.1279529079796833 1.2190749677529866 1.0 20.235727465829328 2.7294357810322176 24.722457257300803 1.1096662055690059 0.9474045885172775 0.43543602054802355 0.0852015401980188 519.1995065213437 1406694.6599041612 0.027817111632466196 0.026579179154287706 536.3345579795313 -2.7294357810322176 -0.16226161705172837 T(ph)PSPSQPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSPSQPK 8 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 T(0.727)PS(0.269)PS(0.005)QPK;T(0.821)PS(0.177)PS(0.002)QPK 101.46 0.060131 2372920000.0 2571640.0 2474860.0 2465270.0 2060320.0 2064830.0 3219940.0 3066410.0 2721950.0 4026000.0 3105580.0 True False 2557794.5759760663 2557234.21901554 2812358.5874890285 2321156.3007506286 2327773.861293742 2997353.126723456 2918076.033476244 2925075.7307820404 3033846.2456360906 2907379.2255791915 0.8797595282626115 0.8795667921531986 0.9673174255170536 0.7983672306416172 0.8006433563306542 1.0309467373064622 1.0036791925191395 1.0060867550566348 1.0434986323573614 1.0 21.47128783177866 2.725852525380104 24.95012282288983 1.01518720953603 0.8679008024313452 0.7323089498487726 0.045841771883432025 422.0434643092405 828607.5749938308 0.015617602319867994 0.014813424208643738 531.9276004177949 -2.725852525380104 -0.14728640710468477 T(ph)PSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSRLSDGLVPSQGNIEHSADGPPVVTAEDASLEDSK 37 1 Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;H0Y3A4;H0YAH5 Q12955-4 ANK3 Ankyrin-3 1 T(0.333)PS(0.333)RLS(0.333)DGLVPSQGNIEHSADGPPVVTAEDASLEDSK 250.92 6.8536e-51 123730000.0 37911.0 27607.0 35221.0 19419.0 23641.0 39491.0 27673.0 36865.0 44812.0 44648.0 True False 37706.891388308046 28525.88230621609 40179.81065357993 21877.443408925064 26651.54121881481 36761.08012181472 26334.351268874074 39616.05349667696 33768.68305003584 41798.52641492405 0.9021105436589005 0.6824614347177321 0.961273377312982 0.523402265231862 0.6376191580117273 0.8794826821619548 0.6300306141766632 0.9477858885123798 0.807891711655625 1.0 15.351164461296868 1.2893902387895764 1.0718831603229177 0.9784874508042282 0.7441276270809848 0.2147565488724561 0.1401549058319207 0.6666493281654137 1.5674213615883625 0.12455263253027704 0.042225784097383125 19.4710888610847 -1.2893902387895764 -0.23435982372324338 T(ph)PSTPQSQHFYQMPTPDPLVPSKPMEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSTPQSQHFYQMPTPDPLVPSKPMEDR 28 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 T(0.325)PS(0.325)T(0.325)PQS(0.025)QHFYQMPTPDPLVPSKPMEDR 70.525 0.017019 121980000.0 46634.0 51265.0 53980.0 55392.0 58326.0 63558.0 63706.0 60870.0 63470.0 66842.0 True False 46382.92772552451 52971.324534653104 61579.91479742901 62404.621520530265 65753.47037471308 59164.385059438864 60624.2973994468 65412.42849159705 47828.66895442685 62576.08633368468 0.7412244907453824 0.846510666266111 0.9840806353573532 0.997259898737673 1.0507763304992441 0.9454791522746717 0.9688093479699251 1.0453262951407296 0.764328224353665 1.0 15.933323811162069 4.4492379982015855 2.6367821456499896 0.9781076827516506 0.7435957613193448 0.4807944161211236 0.07620350749351723 0.23593925105289593 2.9881313322152128 0.018480762187412528 0.09121632987240358 28134.422056041898 -4.4492379982015855 -0.23451192143230581 T(ph)PTDPGLDSALEPSGDPHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPTDPGLDSALEPSGDPHGK 20 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 T(0.977)PT(0.023)DPGLDSALEPSGDPHGK;T(0.963)PT(0.037)DPGLDSALEPSGDPHGK 185.54 1.3266e-16 98775000.0 224237.0 211827.0 196188.0 182299.0 170093.0 228538.0 206055.0 199887.0 275266.0 230426.0 True False 223029.73290707296 218877.53364287445 223809.5651033343 205378.03470846225 191753.33532980297 212739.7059805853 196087.33244345916 214803.58294561936 207430.38267542567 215720.01540237648 1.0338852075968095 1.0146371129939349 1.0375002277181773 0.9520583165422846 0.8888991360960682 0.9861843630215208 0.9089899798018416 0.9957517504574264 0.9615722597113282 1.0 17.718800516406134 3.7346451132286216 24.74783947442015 0.954165969262182 1.027270478039817 0.48821937686478667 0.033945902341159545 232.0586627274521 1466721.7168780454 0.008726659524085767 0.014092878145462846 5428.065920141188 -3.7346451132286216 0.07310450877763497 T(ph)PTPEPAEVETR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPTPEPAEVETR 12 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 T(0.513)PT(0.487)PEPAEVETR 234.71 5.5773e-15 800880000.0 293800.0 307400.0 299950.0 265200.0 297750.0 274060.0 274970.0 278090.0 283910.0 290130.0 True False 292218.2134442489 317631.6231727761 342180.35278786224 298774.29280843114 335666.6975974835 255114.8772678472 261668.65061259363 298842.48791240744 213944.1846990916 271613.6550072103 1.0758598032801097 1.1694243544726945 1.2598054128713765 1.099997320828733 1.2358240884044391 0.9392564496106606 0.963385477087473 1.1002483947446393 0.7876783098162431 1.0 18.051196485374323 2.733210885104682 24.987407031631736 0.9759669446368789 1.1695533362928159 0.578739024382515 0.08895831919019943 343.897649903962 1606264.8367695536 0.027977041085670146 0.02708765072704717 541.0169666777463 -2.733210885104682 0.19358639165593694 T(ph)PTPPAPTLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPTPPAPTLLK 11 0 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 1 T(0.706)PT(0.294)PPAPTLLK 99.215 0.055233 129950000.0 475190.0 452850.0 433530.0 381630.0 419490.0 511200.0 496590.0 460870.0 609360.0 472080.0 True False 472631.6298385721 467922.8384963944 494567.2556896887 429944.31887059443 472909.56498797174 475861.94723536255 472568.04454197886 495262.45965044125 459191.39300566463 441951.4502319784 1.0694197962027048 1.0587652518184605 1.1190533607935726 0.9728315602198353 1.0700486778349603 1.076729009454737 1.0692759222623434 1.1206263932169023 1.0390086801720801 1.0 18.753528368133573 3.025722025157046 24.993688249295197 1.0734589520650952 1.0550568329058039 0.0 0.04462353137891859 914.6461243283461 888740.986952455 0.012658282377263174 0.015129321621091804 1061.0162249958814 -3.025722025157046 -0.018402119159291352 T(ph)PTQPPPEPGDLPTIEEALQIIHSAEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TPTQPPPEPGDLPTIEEALQIIHSAEPR 28 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 T(0.976)PT(0.024)QPPPEPGDLPTIEEALQIIHSAEPR;T(0.98)PT(0.02)QPPPEPGDLPTIEEALQIIHSAEPR;T(0.941)PT(0.059)QPPPEPGDLPTIEEALQIIHSAEPR 187.68 2.8349999999999995e-17 283822000.0 74664.0 75318.0 72433.3 60782.0 67414.1 69806.0 75255.0 63411.1 75663.0 87733.0 True False 74262.01731995033 77824.91409930747 82631.27903846995 68476.99496788102 75998.88604032417 64980.47552564886 71614.62814798237 68143.15827704144 57016.86748225617 82133.80482799976 0.904158981499346 0.9475381575501617 1.0060568752599732 0.8337248604430526 0.9253058006928693 0.7911538453834874 0.8719263438233977 0.8296603136764845 0.6941948884708051 1.0 16.325688511660783 3.3098277307007162 1.3754365947966036 0.8323338314840631 0.9478258921839984 0.21246929641233692 0.08164564439754593 0.5617301287568144 2.2121236419217185 0.02690706903074758 0.04315221097663255 2040.9282198635985 -3.3098277307007162 0.11549206069993523 T(ph)PVKPSSVEEEDSFFR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPVKPSSVEEEDSFFR 16 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 T(0.988)PVKPS(0.01)S(0.002)VEEEDSFFR;T(1)PVKPSSVEEEDSFFR;T(1)PVKPSSVEEEDSFFR;T(0.998)PVKPS(0.002)SVEEEDSFFR 137.09 2.2525e-05 1055635000.0 774631.0 714405.0 627947.0 529498.0 544107.0 679677.0 611430.0 599214.0 772195.0 690596.0 True False 770460.4727655943 738183.5385580586 716356.4793868313 596532.3925093464 613395.8012751435 632692.5287775608 581852.7950105765 643930.391427038 581897.8891328766 646521.5720310189 1.1917011065001695 1.1417771200411575 1.108016360747916 0.9226797964921205 0.948763085117466 0.9786100822436369 0.8999742934836833 0.9959921204240088 0.9000440423122622 1.0 19.30233898266717 3.8778041707393527 3.2939294246805675 0.9500704943945294 1.1618955673040374 0.8651753757884793 0.036130775979227085 0.07780716436298436 1.571465492643328 0.009027178860253298 0.018156833295208966 7547.518231110739 -3.8778041707393527 0.21182507290950803 T(ph)PVS(ph)PVKFS(ph)PGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 3 T(1)PVS(1)PVKFS(1)PGDFWGR;T(1)PVS(1)PVKFS(1)PGDFWGR 148.88 7.4447e-07 120919000.0 234683.0 190412.0 126639.0 181846.0 195794.0 307940.0 270060.0 253540.0 416640.0 295040.0 True False 233419.4928037323 196749.7483135151 144468.67043407957 204867.68495490975 220727.20533804133 286652.8326127882 256996.16607061512 272460.442250033 313964.6546899702 276210.2946035474 0.8450789031551704 0.7123186650081804 0.5230386892039619 0.7417090852785276 0.7991273665409809 1.0378064764900572 0.9304365952018159 0.9864239225446082 1.1366870128450959 1.0 18.07540756556322 2.9298276127840888 2.384750778074789 1.0098422876188375 0.6918882093767997 0.7344763815696682 0.08935789202991738 0.15806257000706705 1.7796202835325552 0.030471848169538955 0.034064233122158456 850.8002577183273 -2.9298276127840888 -0.3179540782420378 T(ph)PVS(ph)PVKFSPGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 2 T(1)PVS(1)PVKFSPGDFWGR;T(1)PVS(1)PVKFSPGDFWGR 175.65 7.8968e-09 964070000.0 981490.0 1049100.0 890810.0 962790.0 906340.0 1214110.0 1157850.0 1106030.0 1500120.0 1201430.0 True False 976205.7668937901 1084018.6593056566 1016228.3049406774 1084679.1152829162 1021757.0267019422 1130181.4334075223 1101840.372083468 1188567.5749065387 1130435.5265781428 1124753.7088040279 0.867928471142192 0.9637831383177339 0.9035118506266162 0.9643703388506949 0.9084273460973034 1.0048257005609396 0.9796281296596708 1.0567358574619552 1.0050516106145198 1.0 20.101177693444384 2.5609999244416 1.578453755564309 1.0225521872574053 0.9230069732632453 0.6193777617626087 0.03347968604518832 0.23002476376786088 1.1574103444877752 0.013820283232426817 0.01147714652814121 363.9149728134036 -2.5609999244416 -0.09954521399415994 T(ph)QTPPVSPAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.55)QT(0.358)PPVS(0.093)PAPQPT(0.841)EERLPS(0.142)S(0.016)PVYEDAASFK 201.08 2.3619000000000004e-25 205740000.0 190510.0 170660.0 159390.0 168630.0 170910.0 230460.0 191210.0 211670.0 308080.0 208940.0 True False 189484.31532765072 176340.31493385165 181830.72655728413 189978.5407099766 192674.37543706436 214528.84264448634 181960.44180686612 227465.8902384811 232157.8120604983 195605.2703174662 0.9687076172340284 0.9015110617809651 0.9295798945609898 0.9712342637887136 0.9850162785714055 1.0967436730938143 0.9302430425905467 1.162882216155553 1.1868689002280335 1.0 17.577585716702618 2.644890623086403 0.8364613666169637 1.1105202153682412 0.9288137367024365 0.4453099106803755 0.07089187627082608 0.5203294681193219 0.7652968629129981 0.04660922202854324 0.039886784092955783 441.4592519932021 -2.644890623086403 -0.1817064786658047 T(ph)QTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.481)QT(0.346)PPVS(0.167)PAPQPT(0.033)EERLPS(0.391)S(0.391)PVY(0.19)EDAASFK 115.45 0.0018759 73735000.0 61376.0 39792.0 35704.0 43038.0 39749.0 58855.0 39745.0 50368.0 68512.0 54670.0 True False 61045.558435514664 41116.45266522804 40730.81285526868 48486.606387214444 44810.79953921873 54786.492379767646 37822.38250935568 54126.71592352164 51628.135613765386 51180.91379465816 1.1927406900242976 0.8033551888149256 0.7958203524595887 0.9473571843939034 0.87553730906414 1.0704477180609817 0.7389938886418098 1.0575566536518333 1.008738058505589 1.0 15.643318285333468 1.6134967158435758 24.99999999993172 1.0248644316296456 0.9129178419904103 0.12172599912634363 0.12791213115800745 0.9497762099555112 4199.461229061272 0.05786602391063498 0.030963135280687653 41.06735343294333 -1.6134967158435758 -0.11194658963923532 T(ph)QTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.605)QT(0.378)PPVS(0.019)PAPQPT(0.097)EERLPS(0.154)S(0.741)PVY(0.005)EDAASFK 191.51 2.8695e-17 246900000.0 81745.0 65833.0 57441.0 73488.0 63639.0 88374.0 78454.0 70860.0 114670.0 80382.0 True False 81304.8940027233 68024.21160811113 65528.19351387766 82791.57326510562 71743.04943209492 82264.91339001943 74658.88029661562 76147.93301978923 86411.11499927715 75251.95194150755 1.0804356818002625 0.903952785982024 0.8707839706910453 1.100191704388725 0.9533712758422525 1.0931930836021764 0.9921188536696973 1.0119064164472187 1.1482906791101377 1.0 16.19944138361196 3.733521128974529 24.981807319336287 1.036989410382113 0.9469470110238525 0.23379713586458672 0.07484158766501046 578.9665259935337 2870060.784394798 0.018976999635015382 0.03043564641886957 5414.035872096111 -3.733521128974529 -0.09004239935826042 T(ph)RHSPTPQQSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.634)RHS(0.366)PTPQQSNR 73.415 0.063472 36807000000.0 21354.0 38823.0 19291.0 21264.0 21791.0 21546.0 23495.0 15780.0 33939.0 21511.0 True False 21239.032436652433 40115.20008600093 22007.00511962212 23956.020219752954 24565.954684623914 20056.575733828475 22358.457090383992 16957.5837292164 25575.18820930034 20138.149563506344 1.054666535754659 1.992000305663451 1.0928017517310753 1.1895839855696186 1.2198714984787622 0.995949288715896 1.110253800622338 0.8420626570351004 1.2699870029591402 1.0 14.297643503897088 4.057429916412339 24.99865223091903 1.0768516129389363 1.5281034488389709 0.34086727054161525 0.24052032667200018 74.53748458937734 32444.227429367013 0.05518189520493383 0.1192065087229018 11413.79101502568 -4.057429916412339 0.4512518359000346 T(ph)RNFKHKTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TRNFKHKTVK 10 3 Q6AZW8;C9J3D4;C9J3N9 Q6AZW8 ZNF660 Zinc finger protein 660 1 T(0.997)RNFKHKT(0.003)VK 60.518 0.051679 2090500000.0 7902300.0 3723100.0 2893900.0 1961500.0 2287600.0 3516500.0 3166200.0 2868700.0 7508400.0 3454100.0 True False 7859754.894828062 3847021.132838521 3301335.965770276 2209825.698882875 2578912.300332509 3273412.631950606 3013038.8099414213 3082776.960963435 5658055.427405365 3233656.380796213 2.4306091833087033 1.189681487397644 1.0209297392808936 0.6833829692005668 0.7975220606765618 1.0122945194147697 0.9317745781014402 0.953340923689725 1.7497392304905939 1.0 21.624734950652847 4.75228711821194 2.979603237774157 0.9927179285276784 2.695098311581118 0.7122154224587303 0.2671722143853768 0.21256325034500556 2.6881833183583623 0.06500103379444987 0.8768466539986196 56531.05861065313 -4.75228711821194 1.7023803830534396 T(ph)RPASQPTPFALHHAASCEVDPSSGDSISLAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 T(0.333)RPAS(0.333)QPT(0.333)PFALHHAAS(0.001)CEVDPSSGDSISLAR 59.53 0.043476 102980000.0 26149.0 30553.0 22849.0 27590.0 25110.0 32139.0 35890.0 24521.0 31181.0 32225.0 True False 26008.216689427034 31569.938135321463 26065.94059293173 31082.891171133564 28307.609661369668 29917.306577068288 34153.863586885775 26350.881535115015 23496.86035399376 30168.372910789458 0.8621020684919146 1.0464580979781892 0.8640154598330847 1.0303138078758314 0.938320728965986 0.9916778298099272 1.1321082409012169 0.8734604817116554 0.778857395573704 1.0 14.880749268382898 3.7314732695801807 24.936569661272696 0.9633087474614366 0.936418497967207 0.027060757505924515 0.10036297161060596 3498.4853946233784 12309303.711804494 0.026991333800450414 0.04277309594248583 5388.566782272304 -3.7314732695801807 -0.02689024949422958 T(ph)RS(ph)RS(ph)PESQVIGENTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TRSRSPESQVIGENTK 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 T(1)RS(1)RS(0.999)PES(0.001)QVIGENTK;T(1)RS(0.982)RS(0.913)PES(0.105)QVIGENTK 131.59 6.9983e-05 914890000.0 868130.0 804650.0 396010.0 616450.0 679590.0 960750.0 848370.0 773840.0 1049190.0 755580.0 True False 863456.084538311 831432.2888288023 451764.76581937505 694492.5067939581 766131.7582544882 894335.6138622352 807331.1020118773 831587.8702798986 790631.1829257146 707358.2375154173 1.22067721664087 1.1754048298768567 0.6386647413709218 0.9818115771625848 1.0830887626975432 1.2643319416249008 1.1413327210942124 1.1756247770589845 1.11772386464713 1.0 19.43208151916413 3.0542126694777165 4.594006352706971 1.1546571006396047 0.9920387558805528 0.13515410059568822 0.15782854548987305 0.3663629687723768 16.290182845137668 0.04858061499442813 0.05786893770910837 1132.955023676139 -3.0542126694777165 -0.1626183447590519 T(ph)RSEREWDRDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSEREWDRDK 11 3 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 T(0.602)RS(0.398)EREWDRDK 68.044 0.059978 591730000.0 253120.0 219380.0 180140.0 224760.0 197700.0 250370.0 266230.0 283450.0 461830.0 319140.0 True False 251757.23004427593 226681.93068198935 205502.14619505114 253214.59295483807 222875.92314029398 233062.51120758548 253351.43780263566 304602.4783299354 348018.1847049468 298772.21197049966 0.8426393752747464 0.7587115588392525 0.6878221533378148 0.847517214819965 0.7459727317689787 0.7800675627444152 0.8479752388339623 1.0195140850649504 1.1648278212008205 1.0 18.188686447474886 1.7517440356264826 2.3654034634471666 1.0871584975878874 0.77507896953273 0.8314602663424969 0.05761548106491381 0.09516764998069319 1.0860457494915747 0.035046799116933605 0.015480096739344697 56.46041105002489 -1.7517440356264826 -0.3120795280551574 T(ph)RSLDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSLDFR 7 1 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 T(0.564)RS(0.436)LDFR 111.65 0.018691 0.0 45892.0 36394.0 33570.0 41483.0 31509.0 41528.0 37428.0 38290.0 59420.0 43512.0 True False 45644.922571080504 37605.35228936241 38296.36420432921 46734.74354665219 35521.48438152516 38657.26710639696 35617.464651155206 41147.39423268032 44776.73718720723 40735.02690750261 1.1205325253553124 0.9231699386072144 0.9401335192754166 1.1472864287722995 0.8720132789450247 0.9489932876238517 0.8743694887456955 1.0101231631959906 1.0992195313601283 1.0 15.313982240711837 1.4751045688245046 11.484681347863594 1.0513291214476492 0.9714298815147351 0.09784884335917732 0.09011195115748533 0.16612817984350722 124.57254933965042 0.047449395967128404 0.021933066041016795 29.86101521759397 -1.4751045688245046 -0.07989923993291415 T(ph)RSPDVISSASTALSQDIPEIASEALSR ddPTM_BT-474_Trastuzumab_2h_R1 10 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 T(0.467)RS(0.467)PDVIS(0.017)S(0.017)AS(0.017)T(0.017)ALSQDIPEIASEALSR;T(0.55)RS(0.4)PDVIS(0.023)S(0.023)AS(0.005)T(0.001)ALSQDIPEIASEALSR;T(0.5)RS(0.5)PDVISSASTALSQDIPEIASEALSR;T(0.483)RS(0.483)PDVIS(0.007)S(0.007)AS(0.009)T(0.009)ALSQDIPEIASEALSR;T(0.585)RS(0.411)PDVIS(0.001)S(0.001)AS(0.001)T(0.001)ALSQDIPEIASEALSR;T(0.489)RS(0.489)PDVIS(0.005)S(0.005)AS(0.006)T(0.006)ALSQDIPEIASEALSR;T(0.5)RS(0.5)PDVISSASTALSQDIPEIASEALSR;T(0.497)RS(0.497)PDVIS(0.001)S(0.001)AS(0.001)T(0.001)ALSQDIPEIASEALSR;T(0.459)RS(0.459)PDVIS(0.021)S(0.021)AS(0.021)T(0.021)ALSQDIPEIASEALSR;T(0.497)RS(0.497)PDVIS(0.001)S(0.001)AS(0.002)TALSQDIPEIASEALSR 167.7 8.7711e-12 25891291000.0 276361.8 323609.0 268393.6 264714.8 288527.1 336915.9 297575.9 289942.9 374356.0 329121.9 True False 274873.8987754828 334380.1299392289 306181.0859610084 298227.66653817997 325269.3159508952 313625.69684772 283181.01686666923 311579.911498214 282100.97991339903 308117.05856656487 0.8921086682258447 1.0852373169302802 0.9937167626662311 0.9679037828207476 1.055667990159736 1.0178783943569456 0.9190695840863076 1.0112387575934911 0.9155643028198474 1.0 18.233119032270466 1.268640820359547 24.99147821404504 0.9577818968823126 0.995135329927435 0.054731081341711674 0.05767833222658167 501.7265572818279 416849.11018286616 0.03613423792381612 0.013190714192547139 18.562686085553437 -1.268640820359547 0.0373534330451224 T(ph)RSWDSSSPVDRPEPEAASPTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 T(0.5)RS(0.5)WDSSSPVDRPEPEAASPTTR 194.81 9.4141e-17 576320000.0 30092.0 26173.0 26946.0 33073.0 34898.0 40285.0 31653.0 28459.0 44391.0 23745.0 True False 29929.98801553549 27044.152483087404 30739.762581169325 37260.038408948916 39342.05344334842 37500.19277068969 30121.82346379757 30582.755091873834 33451.432858924876 22229.573770882733 1.3464040437311082 1.2165843916679597 1.3828318481496757 1.6761472258974999 1.7698069179752047 1.686950598207559 1.3550337840148987 1.3757688477109922 1.5048166556724998 1.0 14.440192665992223 -0.031781913805830446 0.7781884858525694 0.9864894606483777 1.4889642004971646 0.4132888983186862 0.1705688015168427 6.399922990370461 3.832611047011883 0.45735804969287963 0.06567512485858532 0.9294329955637384 0.031781913805830446 0.5024747398487869 T(ph)RSYDNLTTACDNTVPLASR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSYDNLTTACDNTVPLASR 20 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 T(0.8)RS(0.2)YDNLTTACDNTVPLASR 158.91 4.2506e-11 471100000.0 205820.0 149130.0 143100.0 158930.0 172590.0 164410.0 129200.0 123210.0 206200.0 179890.0 True False 204711.88798875167 154093.70189901142 163247.2361525027 179050.52170453983 194568.3134789242 153044.72367951061 122950.10240807042 132404.555847703 155384.77293844064 168409.26618842268 1.2155619023938518 0.9149953882383498 0.969348301594376 1.0631868765713361 1.1553302136073307 0.9087666441600569 0.7300673246239858 0.7862070706938641 0.9226616590359716 1.0 17.36161199476692 2.516058159596901 6.892348105824021 0.830196191048585 1.0490512678833632 0.4477444117654028 0.10626650994647087 0.18509192018950402 26.042114183328213 0.034613669246928706 0.03198809441639336 328.1392337307036 -2.516058159596901 0.21885507683477823 T(ph)RTPASINATPANINLADLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 T(0.783)RT(0.217)PASINATPANINLADLTR;T(0.637)RT(0.363)PASINATPANINLADLTR;T(0.644)RT(0.356)PASINATPANINLADLTR 233.42 1.5287e-29 3298850000.0 1182860.0 1095730.0 1067960.0 1082490.0 1034730.0 1137700.0 1111310.0 1122360.0 1401020.0 1126290.0 True False 1176491.6131881017 1132200.7106672267 1218319.4851252744 1219533.1230097993 1166496.7321747919 1059053.4768577304 1057551.6896835337 1206116.2024286003 1055757.3937061778 1054409.2079346175 1.115782757144752 1.0737773363009486 1.1554522437372539 1.1566032559584978 1.106303628038048 1.0044046171905214 1.002980324645563 1.1438786700195338 1.001278617221298 1.0 20.008003443591203 2.9113561734038393 6.2805607583049765 1.045971538682685 1.1247804539016923 0.4747495003342189 0.04682303032904161 0.2624440991136449 15.312986965523857 0.015269912114275612 0.016291176520695665 815.372713006473 -2.9113561734038393 0.07880891521900724 T(ph)RTSQEELLAEVVQGQSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TRTSQEELLAEVVQGQSR 18 1 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;A0A087WTC9;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 T(0.465)RT(0.268)S(0.268)QEELLAEVVQGQSR;T(0.333)RT(0.333)S(0.333)QEELLAEVVQGQSR;T(0.333)RT(0.333)S(0.333)QEELLAEVVQGQSR 205.73 1.5046e-15 319318000.0 211313.0 234403.0 220575.0 231253.0 215169.0 221710.0 214184.0 160210.0 201716.0 183975.0 True False 210175.31428708162 242204.96215539414 251630.04272773073 260529.6060890956 242569.4967434188 206383.70954920223 203823.10165766362 172165.68372989594 152005.79465591878 172233.5579910783 1.2202924722600732 1.4062588323695917 1.4609815047818102 1.5126529877678718 1.4083753455060362 1.1982781518099563 1.1834110845473078 0.9996059173254386 0.882556201177663 1.0 17.394006739300007 2.139482560753163 1.248786051771286 0.9418977418947861 1.4105363851838268 0.831711821686733 0.08467275032563652 0.17966627696614257 0.5304043434916094 0.05996717488663746 0.03133091036730488 137.87405880466702 -2.139482560753163 0.4686386432890407 T(ph)S(ph)NLS(ph)VLRT(ph)ALRY(ph)IQSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSNLSVLRTALRYIQSLK 18 2 Q99583 Q99583 MNT Max-binding protein MNT 5 T(0.998)S(0.998)NLS(0.998)VLRT(0.991)ALRY(0.99)IQS(0.026)LK;T(0.995)S(0.995)NLS(0.995)VLRT(0.977)ALRY(0.975)IQS(0.063)LK;T(0.999)S(0.999)NLS(0.998)VLRT(0.992)ALRY(0.992)IQS(0.02)LK 47.548 0.063827 292145000.0 137538.0 286342.0 252139.0 304462.0 286103.0 227607.0 219102.0 186647.0 140716.0 277384.0 True False 136797.5106899083 295872.7203726058 287637.9795685244 343006.85798280785 322536.52118466137 211873.0638192471 208503.19920907897 200575.54691426156 106038.42729779615 259681.1156396097 0.5267903688451433 1.139369413304676 1.1076584404686314 1.3208771732898714 1.2420484269340692 0.8158970793751845 0.8029201457161159 0.7723917329153194 0.4083409262803625 1.0 17.986381577541753 2.5800135840414358 5.13251588465845 0.742399143470126 1.086674147812374 0.29095464541295535 0.24060970316194502 0.27915672214283904 11.193660855728249 0.07965135274707988 0.07439870278046354 380.201288226855 -2.5800135840414358 0.344275004342248 T(ph)SDANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSDANETEDHLESLICK 17 0 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 T(0.5)S(0.5)DANETEDHLESLICK;T(0.5)S(0.5)DANETEDHLESLICK 187.57 1.6919e-09 436820000.0 801750.0 719780.0 636890.0 617330.0 619170.0 717000.0 565320.0 505310.0 743700.0 521160.0 True False 797433.4670827985 743737.4421838009 726558.5760528815 695483.9147037297 698017.6293918851 667435.4776364523 537973.3118678816 543018.7981121878 560425.1000694388 487899.122612476 1.634422834812467 1.524367246658342 1.4891573736851456 1.425466623058743 1.430659734853223 1.3679784338669057 1.1026322592819624 1.1129735081394925 1.1486495344952035 1.0 18.896223363308934 2.5427761396072115 0.581342578660373 1.0120627915474396 1.5907272582925347 0.9274487315663931 0.05498047021546859 0.21304238695397143 0.14905055965652733 0.049223684024739776 0.04716435110106343 348.9603948230565 -2.5427761396072115 0.5786644667450951 T(ph)SPADGKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPADGKPR 9 1 Q12955;A0A087WY90;H0Y951;A0A087WX55;Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;H0Y3A4;A0A087WTF3;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 1 T(0.5)S(0.5)PADGKPR 103.22 0.005589899999999999 344950000.0 109680.0 84899.0 73462.0 71191.0 73516.0 85921.0 109810.0 85887.0 147030.0 104710.0 True False 109089.49506659369 87724.81189247074 83804.8110568494 80203.77330062224 82877.82683652925 79981.4835062785 104498.07078506355 92296.32406534905 110796.42660106154 98027.31815325885 1.112847899154396 0.8949016819507307 0.8549128205856499 0.8181777774969754 0.845456433960129 0.8159101464066685 1.0660096874392517 0.9415367655070417 1.1302607139352632 1.0 16.580896233594718 2.232663723522539 24.999506338741735 1.0214477413096246 0.8836394976371825 0.36647983958027563 0.09191889423431869 167.22224675693766 708921.102050433 0.03436535443181202 0.02605067058470865 170.86917538189954 -2.232663723522539 -0.13780824367244204 T(ph)SPADHGGSVGSESGGSAVDSVAGEHSVSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPADHGGSVGSESGGSAVDSVAGEHSVSGR 31 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;A0A0A0MSW0;X6RE05 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 T(0.5)S(0.5)PADHGGSVGSESGGSAVDSVAGEHSVSGR;T(0.499)S(0.499)PADHGGS(0.001)VGS(0.001)ESGGSAVDSVAGEHSVSGR 202.31 3.3598e-25 1081910000.0 75164.0 79359.0 58906.0 63101.0 65894.0 82694.0 82133.0 68480.0 97271.0 84054.0 True False 74759.3253755055 82000.41634147138 67199.45277986942 71089.58013010866 74285.2103156628 76977.55842073755 78159.91301147087 73590.32533439402 73299.8654146219 78689.60175775022 0.9500534213612586 1.0420743593786848 0.8539813555893473 0.9034177139307605 0.9440282916204538 0.9782430804227059 0.9932686309951088 0.9351975825337816 0.9315063715823485 1.0 16.263885386519167 2.9803857677446493 22.26910143933672 0.9632407776882073 0.9370051597239681 0.07952639456882127 0.048479209190360015 616.6068148853841 700069.2953870876 0.015360578957820156 0.016553297628729514 955.8412475179694 -2.9803857677446493 -0.026235617964239122 T(ph)SPAPWKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPAPWKR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.95)S(0.05)PAPWKR 129.83 0.00062943 538500000.0 689620.0 821070.0 626060.0 598320.0 690880.0 812780.0 836040.0 736830.0 1126200.0 769340.0 True False 685907.1625439844 848398.8186027044 714203.8061889297 674067.250652869 778859.472833416 756594.4316783217 795597.5512170522 791815.9961469271 848663.1003068452 720240.062534888 0.9523313103827231 1.177938943880407 0.9916191049901977 0.9358924693531854 1.0813887109975757 1.0504753498652717 1.1046282935399943 1.0993778843128044 1.1783058794590955 1.0 19.4581183244689 2.519255900031211 1.7962197249626 1.1039287236060293 1.0274165856074242 0.151485610525386 0.07550546846870973 0.645660432712674 4.206061067807281 0.031498080846886344 0.025943380943251132 330.56426257154067 -2.519255900031211 -0.07651213799860512 T(ph)SPDSLRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPDSLRR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 T(0.891)S(0.105)PDS(0.004)LRR;T(0.995)S(0.005)PDS(0.001)LRR;T(0.991)S(0.008)PDS(0.001)LRR 122.94 0.0026481 309360000.0 827050.0 884120.0 809600.0 822290.0 788290.0 898100.0 903850.0 863790.0 1246510.0 926260.0 True False 822597.2546938938 913547.399738175 923584.6428306507 926391.8296887073 888674.0589391115 836016.4608999981 860127.322457695 928250.3960367448 939324.3128782508 867145.2937889161 0.9486267879049732 1.0535113391972744 1.0650863810782247 1.068323655013935 1.024827171760487 0.9641019410335455 0.9919068103332987 1.0704669709741896 1.083237514642967 1.0 19.72591421767269 1.696399204697854 10.030852677556963 1.0572436408913857 1.020224645014805 0.1100370595655149 0.0432072305564953 0.2517124513446218 44.521402563164756 0.021506961720958333 0.011611082209979329 49.70490003539893 -1.696399204697854 -0.03701899587658075 T(ph)SPDTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPDTLR 7 0 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 T(0.728)S(0.272)PDTLR 188.76 0.0063152 2153800000.0 2179000.0 2063100.0 1711300.0 1690900.0 1733600.0 2026100.0 2011200.0 1946900.0 2528200.0 2026100.0 True False 2167268.506109657 2131769.0363297155 1952236.1651137474 1904967.7666281154 1954363.684147766 1886040.4759263848 1913910.5724698973 2092187.564157883 1905158.9861443497 1896792.563368521 1.142596479954981 1.1238809543537533 1.029230187220243 1.004310014398768 1.0303518275488197 0.994331437369703 1.0090247133144472 1.103013373503721 1.0044108264326863 1.0 20.85513048098702 4.2649441743040635 4.667202064915584 1.0271180833176439 1.1372051475571419 0.6870520365020469 0.029999560914032303 0.1167293996491111 6.0352160769066945 0.008217501953767309 0.02254458891659623 18405.35397556418 -4.2649441743040635 0.11008706423949799 T(ph)SPDTLRR ddPTM_BT-474_Trastuzumab_2h_R1 7 TSPDTLRR 8 1 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 T(0.747)S(0.253)PDTLRR;T(0.607)S(0.393)PDTLRR;T(0.952)S(0.048)PDTLRR;T(0.954)S(0.046)PDTLRR;T(0.629)S(0.371)PDTLRR;T(0.624)S(0.376)PDTLRR;T(0.991)S(0.009)PDTLRR 139.39 0.00039046 28732700000.0 10869220.0 11422160.0 10815080.0 10818250.0 10149480.0 11904550.0 12322860.0 10529280.0 15310110.0 12206090.0 True False 10810701.327203859 11802339.690758463 12337749.257639455 12187839.340779837 11441956.117318926 11081616.478796419 11726756.183903338 11315028.340200476 11537138.535463374 11427086.886040583 0.9460592568356415 1.0328388861010842 1.0796933094742933 1.0665744876472931 1.0013012267629213 0.9697674122294289 1.0262244700553413 0.99019360341287 1.0096307703372092 1.0 23.445954327543443 3.0951667721021656 11.699768277318086 0.998670657210067 1.0348378219808763 0.15760999697005018 0.03562766063173727 0.801120209714292 93.1656184942052 0.010630710924293846 0.01270961063813757 1244.9926058102583 -3.0951667721021656 0.03616716477080928 T(ph)SPENVQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPENVQDR 9 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 T(0.654)S(0.346)PENVQDR 162.93 0.00070878 495430000.0 308530.0 294420.0 273970.0 281040.0 281230.0 292130.0 313430.0 284220.0 346220.0 293570.0 True False 306868.90876090544 304219.5917193518 312542.5946100704 316619.63518432 317042.973519195 271935.7407000517 298268.193481126 305429.9396399164 260898.7201103143 274834.1112620778 1.1165604857116143 1.1069207905901186 1.137204523757367 1.152039074517923 1.1535794158275623 0.9894541090670428 1.0852662797621282 1.11132471234134 0.9492952636491511 1.0 18.068201550989144 2.7532802729884907 24.979448850712718 1.0451240149401964 1.1330598508447858 0.5462246708246494 0.04697480549156766 750.0218151822991 1272795.4958644947 0.014891749457245394 0.015743524680418567 566.6048308643527 -2.7532802729884907 0.08793583590458942 T(ph)SPGAPPPASKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPGAPPPASKPK 13 1 Q9BZI1 Q9BZI1 IRX2 Iroquois-class homeodomain protein IRX-2 1 T(0.851)S(0.149)PGAPPPASKPK;T(0.503)S(0.497)PGAPPPASKPK 133.25 0.00017686 1060930000.0 1412870.0 1224510.0 1068110.0 934430.0 1031190.0 1548440.0 1510860.0 1369340.0 1995810.0 1451730.0 True False 1405263.2649046134 1265267.075118073 1218490.6038214494 1052728.7421907333 1162505.9341580165 1441399.9874356904 1437773.9297543105 1471527.1041676283 1503969.3679838472 1359079.348511415 1.0339817659975359 0.930973659855774 0.8965558965751699 0.7745896097558805 0.8553628126505614 1.0605708849997906 1.0579028599979015 1.0827381828584004 1.1066089479110461 1.0 20.374198258219824 2.72886656342268 23.546193592578927 1.067620158442008 0.8931394673295454 0.6054351876559545 0.06574654550088826 213.3233927684938 518146.303522957 0.02258290100709018 0.021565573820078926 535.6320597741234 -2.72886656342268 -0.17448069111246256 T(ph)SPGRVDLPGSSTTLTK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPGRVDLPGSSTTLTK 17 1 O94875-12;O94875-10;O94875-3;H7BXR3;O94875-9;O94875-5;O94875-4;O94875-11;O94875-2;O94875-8;H7BZK1;H7BZX1;H7C1R7;O94875-7;O94875 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 T(0.5)S(0.5)PGRVDLPGSSTTLTK;T(0.5)S(0.5)PGRVDLPGSSTTLTK;T(0.596)S(0.404)PGRVDLPGSSTTLTK 113.17 0.00068778 703330000.0 277734.0 243299.0 261546.0 235238.0 228950.0 330375.0 300450.0 273043.0 368622.0 297146.0 True False 276238.71100314794 251397.06013764898 298369.4034014146 265019.10668050457 258105.42540703234 307536.95386909787 285916.08566954115 293418.85514426033 277780.04738173494 278181.88788051007 0.993014725393636 0.9037146956369561 1.0725694820562 0.9526828245350775 0.927829728144985 1.1055247205784906 1.0278026648246532 1.054773398008914 0.9985554756931273 1.0 18.085668965073232 2.7495104660473006 24.919884457730138 1.0410336835664715 0.9710223005849732 0.3062193665292122 0.050535972261112665 828.4773178824947 1885462.6883727375 0.014949217757991563 0.01573918506415589 561.707814769218 -2.7495104660473006 -0.07001138298149834 T(ph)SPHWK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPHWK 6 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 T(0.909)S(0.091)PHWK 120.65 0.07357000000000001 452270000.0 962880.0 843390.0 763430.0 633930.0 732090.0 916870.0 909830.0 837400.0 1195600.0 993880.0 True False 957695.9610660239 871461.7263099783 870914.3081474833 714185.4730016928 825317.3220626097 853488.9349798246 865818.0470118775 899891.0402310403 900960.400219202 930449.7274965231 1.0292828647957262 0.9366026992718258 0.9360143620986097 0.7675701887981493 0.8870090426951023 0.9172864581047598 0.9305371600693095 0.967157078601437 0.9683063722779894 1.0 19.827568677541468 1.7514942489781806 1.5802995301170113 0.9858712250624397 0.9065655538723073 0.19417809020040533 0.06083059460819145 0.6340558260342453 3.077886562057618 0.04930544156287243 0.01958711756564496 56.427946898438904 -1.7514942489781806 -0.07930567119013243 T(ph)SPINEDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPINEDIR 9 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 T(0.615)S(0.385)PINEDIR;T(0.629)S(0.371)PINEDIR 151.79 0.00091687 1042760000.0 922140.0 907180.0 742370.0 712350.0 715730.0 875220.0 829650.0 816970.0 897660.0 796720.0 True False 917175.3006993855 937374.9378981087 846889.243204285 802533.4369611088 806873.9730359262 814718.1014462714 789516.6599292229 877936.4498896021 676443.7210277425 745872.6474936908 1.2296674288584146 1.256749313770804 1.1354341066803213 1.0759657693009814 1.0817851757229795 1.0923018885112863 1.0585140272701865 1.1770594522264317 0.906915843208293 1.0 19.508569795917623 7.999999999999877 0.25920134500695646 1.0237839562854765 2.629906117000323 0.5650164054010849 0.06546616036881099 40.676526184396586 0.5621464620733384 0.08129956591990715 28.83603801995069 99999999.99997178 -7.999999999999877 1.6061221607148464 T(ph)SPKPAVVETVTTAKPQQIQALMDEVTK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPKPAVVETVTTAKPQQIQALMDEVTK 28 2 P56192;H0YIP0;H0YI94 P56192 MARS Methionine--tRNA ligase, cytoplasmic 1 T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK 299.37 8.746799999999996e-70 1847400000.0 696790.0 400400.0 421750.0 377810.0 351340.0 601850.0 610150.0 600780.0 1057500.0 603090.0 True False 693038.560060647 413727.0719530892 481128.7340832842 425640.707262268 396081.0664446682 560245.526102509 580634.7135006511 645613.2542990248 796893.2947740094 564600.2798686736 1.2274853285971592 0.7327787227617428 0.8521581572633918 0.7538797312698327 0.7015247433756089 0.9922870145101991 1.0283996204105796 1.143487308311634 1.4114291529564371 1.0 19.10687031835911 2.075919080265519 1.692546395482179 1.20458036122392 0.8459728061181834 0.40729870105857346 0.16918846232664572 0.3362591483826747 1.8273508900331643 0.09830223820947159 0.05196358588483554 119.10200710440863 -2.075919080265519 -0.3586075551057367 T(ph)SPLKDNPSPEPQLDDIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 T(0.495)S(0.495)PLKDNPS(0.01)PEPQLDDIKR 112.23 0.0095687 803010000.0 247600.0 168330.0 161120.0 156200.0 150260.0 225500.0 231170.0 228570.0 400460.0 230900.0 True False 246266.94911094636 173932.76229236633 183804.29551985473 175974.90398445327 169394.7203392039 209911.71576990237 219987.42394484198 245627.05405494207 301771.9988890778 216163.7643165643 1.1392610130081606 0.8046342218469505 0.8503011413637289 0.8140814189687414 0.7836406849907148 0.9710772591029363 1.0176887168872488 1.1363007802511702 1.3960341588386813 1.0 17.721765177795362 1.973811580684641 1.7243999552383333 1.2032925413037945 0.873818328239177 0.48398758780833673 0.13190140319342744 0.28108644128338384 1.5558378738647853 0.08091437057296558 0.039288755892320705 94.14810449339413 -1.973811580684641 -0.32947421306461744 T(ph)SPPCS(ph)PANLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 T(0.5)S(0.5)PPCS(1)PANLSR 106.58 0.010116 995060000.0 316810.0 310770.0 217040.0 258580.0 268380.0 299480.0 262030.0 296690.0 312200.0 294890.0 True False 315104.3301609001 321113.79158556764 247597.34545450157 291316.2014871956 302556.60218711256 278777.6525000905 249354.60784819376 318830.51436129335 235262.49326566956 276069.86773196934 1.1413934188095765 1.16316131935605 0.8968647954542031 1.0552263594737135 1.0959421420118862 1.0098083314574196 0.903230076852455 1.1548906694548768 0.8521846125346834 1.0 18.074673904753308 4.270220445764182 24.99783918936069 1.0102496317824532 1.1522776356733462 0.31904883472899104 0.08939977381914407 237.62112294938916 187616.14099737201 0.020779290980642327 0.05689549246117023 18630.325629524454 -4.270220445764182 0.14202800389089298 T(ph)SPPCSPANLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 T(0.611)S(0.389)PPCSPANLSR;T(0.591)S(0.409)PPCSPANLSR;T(0.623)S(0.377)PPCSPANLSR 150.14 0.00074151 9957600000.0 2888960.0 2867680.0 2420890.0 2576300.0 2483890.0 2659640.0 2539370.0 2495010.0 3304340.0 2528470.0 True False 2873406.160353632 2963128.995250832 2761730.2692469037 2902459.315846009 2800198.6683305274 2475785.346919131 2416530.97176456 2681200.3156040674 2490029.6828875174 2367100.8798679234 1.2138925657084623 1.2517966684276527 1.1667142252936002 1.2261662950368035 1.1829654968007826 1.0459145902802722 1.0208821230717444 1.1326937260712224 1.051932219731359 1.0 21.174689760729986 2.828031143847967 4.193272762708006 1.06204727293818 1.212699104005069 0.8064548841357797 0.03866638001351382 0.10734183811720589 3.4067909874569966 0.012417507411955202 0.013152842284101176 673.0249180860726 -2.828031143847967 0.15065183106688895 T(ph)SPPLLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.967)S(0.033)PPLLDR;T(0.709)S(0.291)PPLLDR;T(0.7)S(0.3)PPLLDR 198.61 0.0015040999999999998 5736100000.0 4192400.0 4305900.0 3643300.0 3679800.0 3814300.0 4248800.0 4333000.0 3989800.0 5186800.0 3949100.0 True False 4169828.5842194255 4449219.278528487 4156244.971868706 4145662.302701609 4300028.495872649 3955090.456599389 4123396.2363325697 4287539.135793884 3908582.639559182 3697065.0570053863 1.1278753605696559 1.203446304007521 1.1242011995415775 1.1213387481094492 1.1630924610657682 1.0697919554066497 1.1153161150138133 1.1597142786734678 1.057212296589967 1.0 21.817949000080393 -4.999999997640187 0.14284131999162772 0.5279698205847423 1.1776863965858684 0.5898768066935541 0.03567224561305324 96.29758625737462 0.835950843856236 12.820179599501065 0.20580082322697016 1.0000000054336697e-05 4.999999997640187 0.6497165760011261 T(ph)SPSGGTWSSVVSGVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPSGGTWSSVVSGVPR 17 0 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4 Q99700 ATXN2 Ataxin-2 1 T(0.99)S(0.01)PSGGTWSSVVSGVPR 231.03 6.6766000000000005e-15 124240000.0 217300.0 215140.0 191810.0 199770.0 208350.0 225120.0 259260.0 219110.0 240700.0 208360.0 True False 216130.0809442994 222300.80484512346 218815.1807575927 225060.86151712044 234882.13751279865 209557.98427547875 246718.6033306213 235461.1008180358 181382.71021475547 195062.28641402943 1.1080054731110478 1.1396401064082624 1.1217708188508904 1.1537897235522891 1.204139158987656 1.0743131751807804 1.264819601298781 1.207107253517258 0.9298707277005952 1.0 17.57357534688459 1.2370094230834028 24.999700691260063 0.9649352871425033 1.1631968566293687 0.669852570890644 0.05449458453050821 23.71473137303921 382135.27511964255 0.04505666439367742 0.013558308039415221 17.258753386801907 -1.2370094230834028 0.19826156948686535 T(ph)SPSKSPFLHSGMK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPSKSPFLHSGMK 14 1 O14497;H0Y488;A0A1B0GTU5;O14497-3;O14497-2;H0YEW5 O14497 ARID1A AT-rich interactive domain-containing protein 1A 1 T(0.496)S(0.496)PS(0.008)KSPFLHSGMK;T(0.498)S(0.498)PS(0.002)KS(0.001)PFLHSGMK;T(0.494)S(0.494)PS(0.004)KS(0.008)PFLHSGMK 140.28 1.4647e-05 2397530000.0 2341430.0 2008630.0 1962850.0 1802270.0 1582720.0 2650720.0 2784960.0 2418340.0 4354790.0 2732020.0 True False 2328824.0010373285 2075486.0353075226 2239202.218601952 2030437.1972090953 1784270.0104835923 2467481.9655237054 2650240.8452196536 2598808.8108816943 3281610.3556963713 2557660.144600003 0.9105291044841055 0.8114784287073885 0.8754885684595693 0.79386512766208 0.6976180999851477 0.964741922703573 1.0361974208399487 1.0160884026631014 1.2830517622229236 1.0 21.28639314461715 2.4029737773290445 2.6842686367452266 1.080883830656505 0.8193942074898489 0.6534742291277118 0.09092541034835848 0.1735869793875489 2.5557324707955247 0.035058639108337 0.028337812022585625 252.91452822175157 -2.4029737773290445 -0.261489623166656 T(ph)SPTVATQTGASATSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPTVATQTGASATSTR 17 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 T(0.585)S(0.28)PT(0.135)VATQTGASATSTR 330.82 5.952099999999998e-71 452880000.0 349340.0 339320.0 329940.0 297980.0 332880.0 407440.0 385570.0 354970.0 436350.0 379530.0 True False 347459.1922553224 350614.06107672816 376392.68411011 335704.2374474227 375270.2948656602 379274.63181059493 366918.5060795643 381459.66390113666 328817.38929043873 355308.07046801905 0.9779096540015038 0.986788902979018 1.0593417808222534 0.944825815538685 1.0561828623012883 1.0674529044921683 1.0326770951086242 1.073602587744968 0.9254430636976912 1.0 18.43871093285533 3.200697449985141 24.999448800549068 1.0348432007398196 0.9966232577279469 0.08506080575947761 0.04824076332992676 337.22232564584755 222652.3488138704 0.013554718091516411 0.016201311487586526 1587.4404774112922 -3.200697449985141 -0.038219943011872703 T(ph)SSDSALHTSVMNPSPQDTYPGPTPPSILPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 TSSDSALHTSVMNPSPQDTYPGPTPPSILPSR 32 0 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 T(0.333)S(0.333)S(0.333)DSALHTSVMNPSPQDTYPGPTPPSILPSR;T(0.166)S(0.166)S(0.166)DS(0.166)ALHT(0.166)S(0.166)VMNPS(0.002)PQDT(0.002)YPGPTPPSILPSR;T(0.329)S(0.329)S(0.329)DS(0.013)ALHT(0.001)S(0.001)VMNPSPQDTYPGPTPPSILPSR;T(0.165)S(0.165)S(0.165)DS(0.165)ALHT(0.165)S(0.165)VMNPS(0.004)PQDT(0.004)YPGPTPPSILPSR;T(0.364)S(0.364)S(0.27)DS(0.001)ALHTSVMNPSPQDTYPGPTPPSILPSR 326.16 3.508999999999998e-105 3620530000.0 266013.0 453209.0 382868.0 406888.0 439300.0 440695.0 412495.0 422950.0 391775.0 430234.0 True False 264580.8155648228 468293.7875943741 436772.486451686 458399.9790808337 495242.2510649017 410230.7919344439 392541.0409660757 454512.6766965825 295227.30076604005 402776.097778141 0.6568930406355952 1.162665287681301 1.0844051791083966 1.1381012468454168 1.2295720967476411 1.0185082833798376 0.974588718475288 1.1284499730839026 0.7329811833289535 1.0 18.61961854546742 -0.9861156800755754 7.106775832842444 0.9999999977591757 1.0359654203345634 0.0 0.17732317936695569 7.19998324267446e-09 6.75410173361902e-10 0.16106088794499812 0.037962412804366685 0.10324863527439998 0.9861156800755754 0.03596542257538771 T(ph)SSEEEDSRREEPSLLLVLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSEEEDSRREEPSLLLVLK 20 2 A0A087WZV0;O43314-2;O43314;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 T(0.333)S(0.333)S(0.333)EEEDS(0.001)RREEPSLLLVLK;T(0.333)S(0.333)S(0.333)EEEDSRREEPSLLLVLK 159.73 1.1957e-09 142152000.0 160359.0 143846.0 144157.0 147173.0 155407.0 181162.0 181624.0 153561.0 226819.0 178141.0 True False 159495.64496155982 148633.8271532566 164453.052564894 165805.0867100125 175197.16028054443 168638.69734947704 172838.15324894252 165020.50158695792 170922.4966688851 166771.8888658169 0.9563700815902405 0.8912402933377218 0.9860957604024704 0.9942028470002982 1.0505197337034806 1.0111937838946117 1.036374621792564 0.9894983063946219 1.0248879342393715 1.0 17.347516602477555 4.036873820682843 3.546410612265593 1.014990098240073 0.924035137819085 0.7009885917757395 0.02341390585044806 0.11128576555388929 2.9422256866060326 0.005764933414408524 0.013277743697103814 10886.137630478863 -4.036873820682843 -0.09095496042098805 T(ph)SSFAEPGGGGGGGGGGPGGSASGPGGTGGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK 32 0 P49840 P49840 GSK3A Glycogen synthase kinase-3 alpha 1 T(0.333)S(0.333)S(0.333)FAEPGGGGGGGGGGPGGSASGPGGTGGGK 198.48 3.3097e-26 172940000.0 437850.0 340840.0 335610.0 317080.0 378510.0 489740.0 391270.0 409210.0 614620.0 422560.0 True False 435492.6642497085 352184.65335786884 382860.9708255861 357222.2954890549 426711.0048954615 455885.42652395606 372342.77530344925 439747.3281262757 463155.13648605417 395591.85902818304 1.1008635650883878 0.8902727528899381 0.967818123876786 0.9030071962719672 1.078664778248284 1.1524135699958313 0.9412296203924726 1.1116187507158657 1.1707903636436 1.0 18.59365321130098 3.2200811045822673 24.53303801188938 1.077611684631144 0.960283995335951 0.299273539206363 0.08249873380725052 222.5769653921078 295487.9348731683 0.023082579388673287 0.027639554731256906 1659.8968645693083 -3.2200811045822673 -0.1173276892951931 T(ph)SSLDTLAAPYLAGHWPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 T(0.333)S(0.333)S(0.333)LDTLAAPYLAGHWPR;T(0.513)S(0.244)S(0.244)LDTLAAPYLAGHWPR;T(0.648)S(0.252)S(0.1)LDTLAAPYLAGHWPR 301.77 4.7104e-49 683826000.0 349532.0 311751.0 273974.0 300216.0 285473.0 371140.0 350278.0 314179.0 421655.0 340827.0 True False 347650.1585486561 322127.44357754063 312547.1577753019 338223.3148181604 321826.29441896355 345483.96536958613 333333.71494809625 337624.6323486362 317743.77513752726 319075.12906332477 1.0895558032655694 1.0095661310963855 0.9795409585598653 1.0600115271003632 1.0086223121297955 1.0827668279373168 1.0446872369107205 1.0581352214438189 0.9958274594146344 1.0 18.28353663374228 4.7527759234175715 23.783627635298245 1.0311995170479482 1.0895558829121688 0.24752316326730173 0.03204325747440351 1860.2097757756221 3112210.0390597074 0.007637902124346813 0.14752939048946911 56594.72101766063 -4.7527759234175715 0.05835636586422055 T(ph)SSPHKEESPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPHKEESPK 11 1 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 T(0.711)S(0.263)S(0.027)PHKEESPK 186.69 6.3302999999999985e-06 772650000.0 728980.0 439060.0 426530.0 362450.0 382050.0 505940.0 571330.0 487230.0 855130.0 501440.0 True False 725055.2526772922 453673.84668262495 486581.71653477935 408336.13283716456 430701.80291223683 470965.55865465367 543692.5852074518 523589.57670380885 644394.6696549394 469437.6698956177 1.5445186851717985 0.9664197736485486 1.0365203896887392 0.8698410013153836 0.9174845363560321 1.0032547212484582 1.1581784336317644 1.1153548389506793 1.3726948452991097 1.0 18.840574089606466 -0.10399053261162117 8.092570538419844 0.9999929015185635 1.0908882455130706 0.019084344826883703 0.19884183375650913 0.0 0.0 0.18837123543439518 0.04439952598538285 0.7870629470611046 0.10399053261162117 0.09089534399450716 T(ph)SSPHKEESPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPHKEESPKK 12 2 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 T(0.782)S(0.195)S(0.022)PHKEESPKK 117.0 0.037241 413840000.0 1071600.0 651070.0 626180.0 617060.0 589620.0 855610.0 920710.0 893250.0 1575700.0 861840.0 True False 1065830.6246659516 672740.4713698738 714340.7011458694 695179.7327314127 664704.6120484576 796463.6945892969 876171.7398462422 959908.8508315939 1187389.848298256 806836.6333416539 1.3209992960429042 0.8338001071959295 0.8853597762254591 0.8616115134140666 0.8238403966556007 0.987143693873448 1.0859345047552253 1.1897189730416242 1.4716608037248817 1.0 19.6219170635197 1.9734213487875665 1.9970473212115594 1.247838230191961 0.9316428228069918 0.3272510619682938 0.1718203338506719 0.3405790703376677 2.519558282205917 0.09817310767788247 0.049751794591454616 94.06354644842989 -1.9734213487875665 -0.3161954073849692 T(ph)SSPPRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPPRK 7 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.375)S(0.375)S(0.25)PPRK 73.26 0.028934 1970900000.0 552660.0 493730.0 458560.0 425720.0 429020.0 382140.0 540930.0 583770.0 769900.0 594710.0 True False 549684.5399662988 510163.5045839119 523121.2621250277 479616.10834994516 483653.1539992362 355723.5612608009 514763.1493467301 627333.8817239954 580168.4611314512 556755.0986431527 0.9873004150404994 0.9163158196974083 0.9395895311958654 0.8614489737387225 0.8686999996550178 0.63892286236394 0.9245773421765519 1.1267680947203673 1.0420532520409032 1.0 19.0866833394005 1.9150355053725354 6.111317408402366 1.0627408583686253 0.8666841044764421 0.4577417965137702 0.09106908413320866 0.20969451468381672 12.092167175189962 0.04205119504847831 0.0256680654284615 82.23098744369425 -1.9150355053725354 -0.19605675389218324 T(ph)SSSETEEKKPEKPLILQSLGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSSETEEKKPEKPLILQSLGPK 23 3 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 T(0.257)S(0.257)S(0.216)S(0.216)ET(0.055)EEKKPEKPLILQSLGPK;T(0.26)S(0.26)S(0.26)S(0.097)ET(0.123)EEKKPEKPLILQSLGPK 110.01 0.00058152 7876900000.0 6841700.0 3060400.0 2844600.0 2561900.0 2836900.0 5556100.0 5182500.0 4828700.0 10253300.0 4648600.0 True False 6804865.047384322 3162263.563949135 3245094.9542935626 2886236.277322475 3198162.3993763304 5172019.884652577 4931802.675927429 5189042.113641776 7726511.602180949 4351922.36813331 1.563645780359626 0.7266360234512959 0.745669311119972 0.6632095044839876 0.7348849838854393 1.1884448864539454 1.133246932904929 1.1923563139908526 1.7754249613361364 1.0 22.053221390593485 2.2884820813274875 1.5603364753971918 1.3253030899885492 0.8658271470718746 0.25836676571056305 0.3081086520404699 0.5070204174543828 2.464682145608898 0.1642540590222444 0.10430813940411508 194.3041521703262 -2.2884820813274875 -0.4594759429166746 T(ph)SSVLGMSVESAPAVEEEKGEELEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.333)S(0.333)S(0.333)VLGMSVESAPAVEEEKGEELEQK 146.5 3.346e-07 56572000.0 62997.0 29670.0 25606.0 22852.0 29869.0 44689.0 42064.0 37510.0 82780.0 40182.0 True False 62657.83115162472 30657.548014106258 29211.102228658146 25745.06085693165 33672.6401025667 41599.75461659055 40029.203619915395 40309.18667192056 62379.978195170304 37617.550358459026 1.6656542107222807 0.8149799155439243 0.776528560480533 0.6843896163255186 0.895131123151265 1.1058602758602023 1.0641097902036585 1.0715526738932448 1.6582679520795265 1.0 15.199118283679834 1.43216206276332 6.313146985857516 1.3450157721351166 0.9820094647405392 0.15704598380636015 0.29571450669157273 0.30107944930104347 23.674416146401846 0.18676113953102602 0.07265877641650514 27.049675704307052 -1.43216206276332 -0.3630063073945774 T(ph)SSVPEYVYNLHLVENDFVGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSVPEYVYNLHLVENDFVGGR 22 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 T(0.366)S(0.366)S(0.268)VPEYVYNLHLVENDFVGGR 264.14 6.754500000000001e-37 103430000.0 37539.0 21326.0 19639.0 28286.0 20159.0 23813.0 22709.0 22305.0 35065.0 29799.0 True False 37336.89419497501 22035.82301816076 22404.000494751897 31867.00469977108 22726.129158245763 22166.863359772462 21610.47891319557 23969.512362495025 26423.70059692732 27897.20230779257 1.3383741417161976 0.789893652239295 0.8030913009686907 1.1423010934279105 0.8146382890838354 0.7945909096978 0.7746468149302226 0.8592084646351646 0.9471810221466669 1.0 14.767832827085835 4.744754937289918 24.874259701532825 0.8718019865624019 1.3383743634081489 0.5994548449764598 0.11204624479021973 440.54859958498724 1769039.3973426672 0.026616292983013542 0.24668000226626244 55559.066135665875 -4.744754937289918 0.46657237684574693 T(ph)TGTPPDSSLVTYELHSRPEQDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTGTPPDSSLVTYELHSRPEQDK 23 1 Q13561;Q13561-3;Q13561-2;H0YI98;F8W1I6;F8VW18 Q13561 DCTN2 Dynactin subunit 2 1 T(0.357)T(0.357)GT(0.282)PPDS(0.005)SLVTYELHSRPEQDK 167.51 1.5723e-11 257350000.0 193340.0 151330.0 142430.0 122860.0 146050.0 194180.0 190240.0 184110.0 228950.0 189570.0 True False 192299.07892209315 156366.92756908314 162482.90597624675 138414.0634028804 164648.60179382862 180756.79365055272 181037.36441262587 197849.22309163687 172528.3402728222 177471.48030095754 1.0835491910925117 0.8810820042967742 0.9155437577953762 0.779922853903944 0.9277468217125153 1.0185117819720888 1.0200927163374154 1.1148226337895113 0.9721468484978392 1.0 17.43722767632612 2.716865704032058 3.545449414219009 1.0411251036146414 0.906404657314734 0.3145173129883323 0.07784511092095632 0.24799015608616157 6.696705189117114 0.026011043135377738 0.025578983098628227 521.0335680785321 -2.716865704032058 -0.13472044629990743 T(ph)TPDQELAPASEPVWERPWSVEEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPDQELAPASEPVWERPWSVEEIR 25 1 Q641Q2;Q641Q2-2;E7ESD2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIR;T(0.741)T(0.259)PDQELAPASEPVWERPWSVEEIR 187.69 2.1465e-17 514620000.0 7498.5 10924.900000000001 7217.4 8542.7 5253.3 9203.1 10036.099999999999 10602.2 8351.1 11801.8 True False 7458.128909161667 11288.528692258496 8233.547185234605 9624.204944097237 5922.276616251424 8566.911358767142 9550.61550137488 11393.390000880734 6293.083304006836 11048.599019970681 0.6750293766368813 1.021715845769598 0.7452118744061773 0.8710792134551351 0.5360205946063141 0.7753844033331454 0.8644186909228807 1.0312067602676893 0.5695820160213884 1.0 13.431575824724515 2.1928050634812113 5.4047170909719595 0.8878596741130338 0.7747657931409987 0.06928082620169729 0.16514095208336158 0.48936979034586603 32.50868011833197 0.061503780652978436 0.04578493291382708 155.8852642411602 -2.1928050634812113 -0.1130938809720351 T(ph)TPDQELAPASEPVWERPWSVEEIRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TTPDQELAPASEPVWERPWSVEEIRR 26 2 Q641Q2;Q641Q2-2;E7ESD2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR;T(0.62)T(0.38)PDQELAPASEPVWERPWSVEEIRR;T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR 202.3 2.2018e-23 895030000.0 196989.0 177021.0 193560.0 173007.0 190354.0 229924.0 223449.0 229257.0 286877.0 215015.0 True False 195928.43311153539 182913.03697354585 220811.5655463201 194909.66846119246 214594.45358344735 214029.89506287815 212639.91821192627 246365.3214834574 216180.00730485434 201292.55861639715 0.973351595599298 0.9086924933083239 1.0969683482791845 0.9682904812821792 1.0660823979708043 1.0632777313480053 1.0563724743404637 1.2239166871188485 1.0739592600480983 1.0 17.618934314129465 3.3240484572320517 0.7309439425447061 1.116201973162862 0.9532320968349802 0.2800117776588723 0.06999376641119474 0.8102226012734218 0.919110472036145 0.039079382809356425 0.07963114708235149 2108.863437251941 -3.3240484572320517 -0.16296987632788185 T(ph)TPDQELVPASEPVWERPWSVEEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPDQELVPASEPVWERPWSVEEIR 25 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIR;T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIR 169.7 1.5429e-11 354936000.0 23799.6 19863.8 18059.0 19223.4 19072.9 18479.3 18574.1 19925.0 25589.5 18887.9 True False 23671.465597984145 20524.954575079344 20601.5502283581 21657.080468980395 21501.720761064807 17201.869486593172 17675.59982304751 21411.904677099923 19283.310606732397 17682.45805125526 1.3386976815875284 1.1607523408558178 1.1650840719452813 1.2247777094227565 1.2159916171574585 0.9728211675509689 0.9996121450882071 1.2109122280982825 1.090533372161089 1.0 14.110031218298229 2.7718397189987103 23.757194373438388 1.0749075340020242 1.2148069682888731 0.5219088053674972 0.0782864006562233 353.83003873421393 252590.31786597913 0.025398629196837854 0.026937149721902885 591.3433523397408 -2.7718397189987103 0.13989943428684892 T(ph)TPPEAAQNGQSPMAALILVADNAGGSHASK ddPTM_BT-474_Trastuzumab_2h_R1 7 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK 245.12 1.455e-45 2172226000.0 596385.0 674216.0 754474.0 695275.0 778015.0 1029774.0 974100.0 1013996.0 1069243.0 984373.0 True False 593174.1294246027 696656.8719878207 860697.3811944326 783296.7437118479 877090.5985938075 958588.1472072535 926979.0615766358 1089665.5304873576 805742.3897721488 921549.472375875 0.6436704129354253 0.7559625314436438 0.9339676349392749 0.8499779634102622 0.9517563895213931 1.040191737873701 1.0058918043615852 1.1824275995493303 0.8743343834757342 1.0 19.813702091877712 5.004260388050977 0.49905827642425715 1.0514619839652468 0.2437873214511966 0.6787093917192448 0.0818280696667755 3.076394443945004 0.4856914027702456 0.048900283773788016 1.5420588465573677 100985.81808727114 -5.004260388050977 -0.8076746625140502 T(ph)TPPESAPQNGPSPMAALMSVADTLGTAHSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 T(0.5)T(0.5)PPES(0.001)APQNGPSPMAALMSVADTLGTAHSPK;T(0.5)T(0.5)PPES(0.001)APQNGPSPMAALMSVADTLGTAHSPK 212.44 3.6588000000000005e-27 415600000.0 182731.0 147904.0 136385.0 126083.0 136635.0 186761.0 202725.0 177826.0 270560.0 209850.0 True False 181747.1965993227 152826.89523014403 155586.82252032886 142045.0948724187 154034.65735090556 173850.65165810517 192918.41726529444 191096.2791021313 203884.11331825657 196457.193338376 0.925123654221625 0.7779144791451664 0.7919629710496149 0.7230333105073001 0.784062190512911 0.8849289186304645 0.9819870374153905 0.9727120491484823 1.0378042659251907 1.0 17.583855467907156 2.411111535758964 2.34341074079406 0.9969014772355375 0.7945419129747276 0.7747104580776388 0.050173910748047924 0.13909461186011002 1.561564277351726 0.02062695507017985 0.01641739056358438 257.69828942561213 -2.411111535758964 -0.2023595642608098 T(ph)TPPPGRPPAPSSEEEDGEAVAH ddPTM_BT-474_Trastuzumab_2h_R1 5 TTPPPGRPPAPSSEEEDGEAVAH 23 1 Q96KN1 Q96KN1 FAM84B Protein FAM84B 1 T(0.878)T(0.122)PPPGRPPAPSSEEEDGEAVAH;T(0.831)T(0.169)PPPGRPPAPSSEEEDGEAVAH;T(0.5)T(0.5)PPPGRPPAPSSEEEDGEAVAH;T(0.554)T(0.446)PPPGRPPAPSSEEEDGEAVAH;T(0.547)T(0.453)PPPGRPPAPSSEEEDGEAVAH 140.21 3.1858e-07 14575600000.0 1707875.0 1580715.0 1449009.0 1456890.0 1402945.0 1744150.0 1816345.0 1467220.0 2247630.0 1857830.0 True False 1698679.9907627502 1633328.1432126055 1653016.8721879928 1641332.124621704 1581601.729843497 1623581.015787473 1728481.453238285 1576711.4067921964 1693731.7031989675 1739261.6988317126 0.9766672789401263 0.9390928026010897 0.950412967351807 0.9436947445713377 0.9093523596281583 0.9334886273170139 0.993801826602248 0.9065406360936347 0.9738222283263478 1.0 20.73004359409119 1.0027716663015322 24.98139756446563 1.000000004491788 0.9431197548446838 0.33994470006843347 0.025169175994811582 65.38337942851554 589300.8657878751 0.023115361860679032 0.005778840484148087 10.064024058469842 -1.0027716663015322 -0.05688024964710425 T(ph)TPTLGLEEVLSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPTLGLEEVLSSR 14 0 O43474-4;O43474-1;O43474 O43474-4 KLF4 Krueppel-like factor 4 1 T(0.551)T(0.449)PTLGLEEVLSSR 87.18 0.07875599999999999 50546000.0 46019.0 77774.0 66572.0 76754.0 71164.0 79052.0 72898.0 60579.0 58375.0 75107.0 True False 45771.238817191545 80362.66057462411 75944.75894580298 86471.04853023506 80226.31357792545 73587.32130839163 69371.64524259686 65099.712593929034 43989.26343492463 70313.60695766215 0.6509584815461356 1.1429176236544483 1.0800862341130004 1.2297911068948826 1.1409784968965115 1.04655875999507 0.9866034220711721 0.9258480031201848 0.625615230653888 1.0 16.10151628350972 1.6594291280337006 2.4773181263182873 0.8086320958050479 1.0614038206048761 0.21664979810183416 0.16942711231865637 0.3304551408329436 4.550898010707463 0.11175563307419609 0.045500852139585185 45.64877504659625 -1.6594291280337006 0.25277172479982823 T(ph)TPTMSEEPPLDLTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPTMSEEPPLDLTGK 16 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 T(0.5)T(0.5)PT(0.001)MSEEPPLDLTGK 130.1 0.00057889 196830000.0 222580.0 187470.0 167410.0 167380.0 171230.0 229980.0 218960.0 199680.0 297930.0 199450.0 True False 221381.6540109629 193709.82562199197 190979.87284619454 188570.29083814172 193035.12554027585 214082.023914688 208368.0682915717 214581.1355544948 224509.1435574665 186720.93024226412 1.1856284869817628 1.0374296302544124 1.0228091333864104 1.0099044097171008 1.0338162159422581 1.1465346902295517 1.1159331094870892 1.1492077255403719 1.2023780262136305 1.0 17.51052412810841 2.7365846998138297 24.781077773440906 1.1327266482713951 1.0521614878255434 0.1824602618299377 0.0665028029810059 220.39968821228965 2764136.297314756 0.020420243162558718 0.02017929169856723 545.2362219384082 -2.7365846998138297 -0.08056516044585171 T(ph)TPTQPSEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPTQPSEQK 10 0 O95104-2;O95104-3;O95104 O95104-2 SCAF4 Splicing factor, arginine/serine-rich 15 1 T(0.993)T(0.007)PTQPSEQK;T(0.603)T(0.392)PT(0.005)QPSEQK 238.92 3.5775e-11 246760000.0 748276.0 521141.0 450570.0 438845.0 477360.0 656444.0 669575.0 585104.0 945460.0 667315.0 True False 744247.3651572788 538486.8631486131 514006.3395753531 494402.73200420855 538148.9664656079 611065.5713829619 637185.099225106 628767.4315779099 712464.0515149273 624726.3853828856 1.1913173231848382 0.8619563312002302 0.8227703385063946 0.7913908289645817 0.8614154597228743 0.978133124645358 1.0199426727183687 1.0064685057163827 1.1404417488758196 1.0 19.252864937999863 2.4625492156645605 2.747673061241477 1.0387884347424423 0.8929450993765238 0.25011334322237455 0.10946621419880603 0.3791679376640558 5.842471094736357 0.04189177677442483 0.035347496896777596 290.1009931956138 -2.4625492156645605 -0.14584333536591854 T(ph)TPVDLCLLEESVGSLEGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPVDLCLLEESVGSLEGSR 20 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 T(0.5)T(0.5)PVDLCLLEESVGSLEGSR 101.15 0.0046307 15515000.0 11528.0 9795.7 8204.5 8882.1 10595.0 11890.0 9433.0 9252.7 10076.0 9193.2 True False 11465.934528881213 10121.7439528743 9359.622285207592 10006.572949297775 11944.21044851499 11068.072286049404 8976.689752440616 9943.183458258582 7592.904811482672 8606.482105305502 1.3322440444990862 1.1760605354230282 1.08750848147791 1.1626786446379969 1.3878156373731296 1.2860158367408263 1.043014979012958 1.1553133250726293 0.8822309415832044 1.0 13.071207941989032 1.6028739599971293 1.4794617224010234 0.9551629515008512 1.2247508262749551 0.5111191047568755 0.1033947256246924 0.3316740438903376 1.4162711118452977 0.08993050353822578 0.031871200370077735 40.075039583784516 -1.6028739599971293 0.26958787477410395 T(ph)VDGPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVDGPSR 7 0 O14556 O14556 GAPDHS Glyceraldehyde-3-phosphate dehydrogenase, testis-specific 1 T(1)VDGPSR 104.44 0.052632000000000005 0.0 326530.0 325620.0 279270.0 285620.0 291470.0 287770.0 287720.0 293760.0 416450.0 315410.0 True False 324771.9987608935 336458.064858553 318588.7885416447 321779.46271472145 328586.97682196007 267877.1372377154 273801.8844028635 315681.86288305506 313821.47764410044 295280.2637639133 1.0998770951402286 1.1394532793006538 1.078936954609223 1.0897425334596529 1.1127969496961592 0.9071962136009617 0.927261039775342 1.0690923221859945 1.0627919172241442 1.0 18.17172540584443 2.7742348606147806 24.97583847303338 0.9979248101268421 1.1039196446556225 0.5537754378804751 0.049683828070637766 516.7653159759043 361790.76425465086 0.016725598940248915 0.017739638641271867 594.6136307381001 -2.7742348606147806 0.10599483452878045 T(ph)VHRDSEEEDDYLFDDPLPIPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVHRDSEEEDDYLFDDPLPIPLR 23 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 T(0.466)VHRDS(0.466)EEEDDY(0.067)LFDDPLPIPLR;T(0.48)VHRDS(0.48)EEEDDY(0.039)LFDDPLPIPLR 125.73 7.744699999999999e-05 153824000.0 91023.0 101244.0 81326.0 89179.0 81740.0 97650.0 88300.0 80792.0 107109.0 105088.0 True False 90532.94228160608 104613.84533670964 92775.9939017361 100469.05225627104 92149.10448906233 90899.68534337472 84028.59166124297 86821.1092934632 80713.422137068 98381.19386963676 0.9202260993251388 1.063352061729721 0.9430256968081927 1.02122212899145 0.9366536516233737 0.9239538754106231 0.8541123395248469 0.8824970086102876 0.8204151521480821 1.0 16.586094942024328 2.7829532116144353 1.8974838123985454 0.8800804031090127 0.9888197622804946 0.34325885586640914 0.057843241347100616 0.3120046688140551 2.2236814280012154 0.019536272724539176 0.01982278787879532 606.6709668326533 -2.7829532116144353 0.10873935917148192 T(ph)WSRDEVMGDNLLLSSVFQFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TWSRDEVMGDNLLLSSVFQFSK 22 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;H0Y4T4;E7EWM2;E7EMW0;Q96L14;E5RG47 Q5SW79 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 T(0.5)WS(0.5)RDEVMGDNLLLSSVFQFSK;T(0.5)WS(0.5)RDEVMGDNLLLSSVFQFSK 184.06 1.1156999999999998e-16 384083000.0 374590.0 344660.0 301232.0 321773.0 320913.0 421640.0 392560.0 352120.0 533440.0 431730.0 True False 372573.2490608615 356131.7997486301 343642.8472445188 362509.4288078711 361779.3683496263 392493.01923379896 373570.3730751706 378396.98242913047 401980.8597297851 404176.6217773509 0.9218080140867256 0.8811291414692775 0.8502294015259042 0.896908453570991 0.8951021629076805 0.9710928294363643 0.9242750642835538 0.9362168963784806 0.9945673204998597 1.0 18.624626350777685 1.951950306046838 0.5171917956924091 1.000550522129273 0.879404369669114 0.6886152024668322 0.026101025834785255 0.5255759177387971 0.3081075707801963 0.026589694949230254 0.019413200867766926 89.52623196953225 -1.951950306046838 -0.12114615246015903 T(ph)YSDTDSCSDIPLEDPDRPVHCSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYSDTDSCSDIPLEDPDRPVHCSK 24 1 Q9HB20 Q9HB20 PLEKHA3 Pleckstrin homology domain-containing family A member 3 1 T(0.539)YS(0.442)DT(0.019)DSCSDIPLEDPDRPVHCSK 170.44 1.1659e-11 400460000.0 277990.0 339170.0 390290.0 382940.0 380790.0 469130.0 491990.0 432930.0 522010.0 474300.0 True False 276493.33272759285 350459.06841740524 445239.4395385057 431420.1647362774 429281.3493808421 436700.1473132346 468190.5641156853 465237.43497399543 393367.630075632 444029.7679313403 0.6226909831197323 0.789269309690958 1.002724302951131 0.9716018967516324 0.9667850679939577 0.9834929521679296 1.0544125595383076 1.0477618136762723 0.8859037354821172 1.0 18.760296873100774 4.469956694191564 2.2692476135986746 0.9972099749045041 0.610293815010525 0.8675375665206768 0.04626771915386321 0.12159600110884698 1.0558570764288613 0.012302715205776887 0.07463737017032564 29509.14960598245 -4.469956694191564 -0.3869161598939791 TAAAAAEHSQR ddPTM_BT-474_Trastuzumab_2h_R1 8 TAAAAAEHSQR 11 0 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ;;;;;;; 179.19 7.2102999999999985e-06 2040941000.0 1519967.0 1767002.0 1572929.0 1630291.0 1571728.0 1619528.0 1543509.0 1463113.0 1941878.0 1679502.0 False True 1511783.6665562077 1825815.5933947354 1794383.7310560434 1836685.673442498 1771878.2444382817 1507573.8413188404 1468843.5728930207 1572297.9215972743 1463328.186732071 1572314.744465997 0.9615019332974917 1.1612278011263162 1.14123698030032 1.168141226117096 1.126923378842995 0.958824463501966 0.9341918200938082 0.9999893005717959 0.9306840070555079 1.0 20.584458613147493 2.738267269175388 24.99803081998424 0.9651294261469259 1.1193166691911332 0.6113277297198279 0.0584797205943768 17.214466232445957 1466912.6740340518 0.01805655925298721 0.018007042385892343 547.3527056049167 -2.738267269175388 0.15418724304420728 TAAAVAIQSAVGTALVFEGPAEQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAAAVAIQSAVGTALVFEGPAEQEK 25 0 Q499Z4 Q499Z4 ZNF672 Zinc finger protein 672 0 60.278 0.043212 274240000.0 161340.0 473560.0 432030.0 553540.0 550540.0 458970.0 447930.0 349250.0 258330.0 515510.0 False True 160471.36336655924 489322.15832693485 492856.0687279225 623618.1072442654 620648.0056937655 427242.48419916735 426261.9146412304 375312.8084555652 194668.03294465254 482609.7104496841 0.3325075312244254 1.0139086465355125 1.021231148185334 1.2921789465512268 1.2860246950179692 0.8852753580135656 0.8832435514901883 0.7776735534514168 0.4033653462199622 1.0 18.880497418330023 1.8964153554247338 1.9788605605565714 0.6908661135497777 1.0044267859169407 0.12479588815585674 0.28430566113072436 0.5979900866631201 4.352436626956236 0.18068031404840523 0.08556423856384937 78.77988734335997 -1.8964153554247338 0.313560672367163 TAADKDRGEEDADGSK ddPTM_BT-474_Trastuzumab_2h_R1 5 TAADKDRGEEDADGSK 16 2 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;;; 230.82 1.0707e-15 2820920000.0 2666270.0 1932095.0 1700680.0 1707416.0 1771757.0 2587380.0 2426446.0 2379510.0 4504660.0 2546700.0 False True 2651915.098570449 1996403.6140989072 1940120.9614244436 1923574.6905346948 1997379.7519235113 2408520.510637386 2309069.537056135 2557081.119106952 3394546.90235148 2384167.4256604384 1.1123023786116202 0.837358816588094 0.8137519792205913 0.8068119167435757 0.837768241620119 1.0102145028553107 0.9685014199103485 1.0725258182732762 1.4237871324876257 1.0 21.18505412042993 1.6896982175775002 2.069599219377834 1.2141742065904173 0.8928609016662324 0.4462185948137982 0.13353079208488694 0.24245474560383354 2.1909187080613286 0.09234339261561449 0.03688300090903299 48.94386002251438 -1.6896982175775002 -0.32131330492418486 TAAGSSWEDPSLLEWDADDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 TAAGSSWEDPSLLEWDADDFR 21 0 K7EP90;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3;Q9BTD8;K7EQ03 K7EP90 RBM42 RNA-binding protein 42 0 ;; 206.2 1.0101e-21 272723000.0 567560.0 675670.0 587140.0 629250.0 624850.0 682440.0 686430.0 606840.0 724750.0 672360.0 False True 564504.320021844 698159.2674988598 669804.2084876328 708912.9854815442 704420.9437238886 635264.5290909641 653224.7584827527 652125.4822710822 546145.0736524473 629449.4091636436 0.8968223844580411 1.1091586668204387 1.0641112673020205 1.1262429913525294 1.1191065294029912 1.009238423045066 1.0377716603955507 1.0360252512391244 0.867655232813891 1.0 19.263730903085232 1.3801500567030511 6.023934429190923 0.9347796352844228 1.0560925479922 0.3069826341350137 0.06966864938476378 0.2313183206560075 11.18141754301344 0.046346466610804604 0.01677731682451561 23.996619029640662 -1.3801500567030511 0.12131291270777733 TAAKGEAAAERPGEAAVASS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAAKGEAAAERPGEAAVASSPSK 23 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 TAAKGEAAAERPGEAAVAS(0.048)S(0.904)PS(0.048)K 117.57 0.00019157 122450000.0 123450.0 138350.0 139010.0 149700.0 138240.0 209960.0 199490.0 149560.0 399680.0 238890.0 True False 122785.35891658446 142954.896115659 158581.39970341962 168652.0046509132 155844.0445873255 195445.9593926771 189839.90657419447 160720.92665029175 301184.2194376137 223643.83567598098 0.5490218791206836 0.6392078533421977 0.7090801283393077 0.7541097841626143 0.6968403314863327 0.873916147976654 0.8488492696451414 0.7186467991147629 1.346713708997437 1.0 17.770843468137006 2.17991142303905 0.46186806145193815 1.0823925771493443 0.6023209374996634 0.5545013603533061 0.14336537108883052 0.8468208244365458 0.3994415699493696 0.14383592992827832 0.13629200965625324 151.32525800320158 -2.17991142303905 -0.4800716396496809 TAALESNLPGS(ph)PNTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TAALESNLPGSPNTSR 16 0 A0A2U3TZV8;Q4KWH8-2;Q4KWH8 A0A2U3TZV8 PLCH1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1 1 TAALESNLPGS(1)PNTSR;TAALESNLPGS(1)PNTSR;TAALESNLPGS(0.992)PNT(0.004)S(0.004)R;TAALESNLPGS(0.998)PNT(0.001)S(0.001)R 348.12 4.1257e-87 1235120000.0 1116760.0 1203800.0 1119950.0 1152240.0 1075220.0 1318520.0 1377760.0 1119120.0 1238900.0 1321630.0 True False 1110747.4882437005 1243867.7552875334 1277629.225220093 1298113.4658581705 1212142.893671759 1227373.8158622263 1311112.4852456874 1202634.4171762122 933589.695409476 1237282.44189563 0.8977315531463727 1.0053224010694066 1.032609194116299 1.0491650264343377 0.9796816414970255 0.9919916215587584 1.059671131546119 0.9719966730746346 0.7545485685379412 1.0 20.23874343989711 1.437198997056949 11.942369614014103 0.8724617276600044 1.0043430559142716 0.33486135160670716 0.0694024661696226 0.48271129314225525 140.66867995185618 0.03751459626289517 0.015873938223879763 27.365223345652495 -1.437198997056949 0.13188132825426724 TAALHSESHTER ddPTM_BT-474_Trastuzumab_2h_R1 1 TAALHSESHTER 12 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;E9PIK8 E9PP16 PPFIBP2 Liprin-beta-2 0 128.67 0.00014329 86005000.0 53943.0 64495.0 66211.0 63850.0 73256.0 60853.0 63875.0 42119.0 75461.0 64834.0 False True 53652.57688163073 66641.67708694909 75532.9332836711 71933.40345331193 82584.71737767008 56646.375342553765 60785.122223804094 45262.133655948346 56864.64767559483 60696.23861281999 0.8839522531845734 1.0979539854529525 1.2444417481204078 1.1851377465442887 1.360623314806643 0.9332765363583695 1.0014644006451716 0.7457156273665413 0.9368726790194234 1.0 15.88931949400782 2.5714117172695743 8.135117422561995 0.8967485222532097 1.157973889279737 0.4294646480709252 0.13192977994556146 0.2796296866415748 21.789249309023578 0.04437351040963348 0.0417628843347008 372.7449062160616 -2.5714117172695743 0.26122536702652743 TAAPS(ph)PSLLYK ddPTM_BT-474_Trastuzumab_2h_R1 3 TAAPSPSLLYK 11 0 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 TAAPS(0.989)PS(0.011)LLYK;TAAPS(0.985)PS(0.015)LLYK;TAAPS(0.989)PS(0.011)LLYK 204.85 3.336e-08 715610000.0 1528770.0 1510730.0 1398850.0 1321574.0 1308934.0 1714380.0 1677820.0 1560810.0 2262890.0 1739690.0 True False 1520539.2721823163 1561013.7347944286 1595795.9209778348 1488885.1328959668 1475618.9862403527 1595868.945816434 1596657.436705174 1677285.5678325882 1705231.0806724895 1628661.494776458 0.9336128330282764 0.9584641988534797 0.979820500512825 0.9141771557019119 0.9060317266497965 0.9798653378463246 0.9803494721438866 1.029855235855996 1.0470138123493495 1.0 20.635255350870363 2.0999630669635083 1.7852149219606352 1.0284660735992397 0.9417396974117432 0.6913196778809474 0.02440468713214842 0.20570113430983974 1.2560190616944629 0.014547146393851927 0.007994894517972447 125.88183554922193 -2.0999630669635083 -0.08672637618749646 TAAPSVRPEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAAPSVRPEK 10 1 Q14137;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 101.93 0.0027493 80710000.0 154910.0 169340.0 151790.0 159100.0 160970.0 144520.0 154890.0 138620.0 172710.0 150210.0 False True 154075.9817721188 174976.37953180823 173160.71261766864 179242.0436871095 181468.5753560603 134529.67256348682 147397.37896273998 148964.52829809726 130147.93469543186 140623.46919874908 1.0956633529952011 1.2442900216357677 1.2313784719173249 1.274623963612924 1.290457250059612 0.9566658633158194 1.0481705493584221 1.0593148437232722 0.9255064992848975 1.0 17.101477865938797 2.737692545411612 24.999031750798032 1.0105286741024226 1.2310850940629745 0.7747951291651095 0.0616214503485354 38.4657842689584 1107740.467222076 0.019746486544152227 0.01963219002187396 546.6288452649168 -2.737692545411612 0.22055641996055186 TAAQCLEHYEFLLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 TAAQCLEHYEFLLDK 15 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 ; 203.9 5.172e-09 319130000.0 421110.0 412310.0 399420.0 362020.0 375270.0 496740.0 486890.0 434780.0 610170.0 492550.0 False True 418842.790549719 426033.4891033421 455654.86417912366 407851.69488125294 423058.41010044597 462401.5330001835 463337.2705995771 467225.491368105 459801.7793591088 461115.03730672953 0.9083260285678096 0.9239201818090971 0.9881587615110157 0.8844901204337731 0.9174682581844135 1.0027899669049358 1.0048192600827488 1.0132514742895076 0.997151994965744 1.0 18.814767188319617 2.733585149575366 23.742857674160426 1.0052442117843075 0.9257588375360638 0.7181135796938289 0.024771315877345667 113.42792940173423 541273.8095774794 0.008012268475383765 0.007779151832287548 541.4834029550468 -2.733585149575366 -0.07948537424824365 TAAVWEEIVGESNDKLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAAVWEEIVGESNDKLR 17 1 K7ELV2;Q96EE3;Q96EE3-1;K7EP88;K7EPZ5 K7ELV2 SEH1L Nucleoporin SEH1 0 104.44 0.00077556 19996000.0 22479.0 27430.0 21626.0 29970.0 29628.0 27415.0 28799.0 25545.0 40145.0 32236.0 False True 22357.9755616517 28342.990968214854 24670.752823438306 33764.19892710668 33400.95018108564 25519.865577968423 27405.882347136347 27451.297614881656 30251.802665439827 30178.670881371883 0.7408535534761541 0.9391729370596594 0.8174897072311624 1.1188100052460561 1.1067734000738496 0.8456258951324739 0.908120919402482 0.909625799054864 1.0024232937346849 1.0 14.881241648135115 5.17043886617475 1.2422818252036492 0.9635704523795114 0.38945675677004726 0.344158102278706 0.09331980016055301 4.723711352919849 3.024840064057214 0.027296364060554627 4.499667665441496 148060.38221648382 -5.17043886617475 -0.5741136956094641 TADGIVSHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 TADGIVSHLK 10 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;; 152.54 1.7849e-05 8049470000.0 6658010.0 6809130.0 6507740.0 5715920.0 5817340.0 7412080.0 7732790.0 6993750.0 9403420.0 6884700.0 False True 6622164.0139344465 7035767.775843997 7423973.225709897 6439554.885933516 6558143.766924412 6899700.355759559 7358725.405573552 7515659.1385429185 7086073.14037241 6445312.551711783 1.0274387721004614 1.0916100219182385 1.151840685171768 0.999106689437933 1.0175059338561732 1.0704989556987579 1.1417173870985013 1.16606589335173 1.0994149753824507 1.0 22.619818890032327 2.334880237837347 6.0783664577523435 1.1217469903390058 1.0598777882720514 0.07534353273312233 0.058071053401318726 0.3476119346622291 18.30796525150561 0.02059950523579299 0.017101352683699184 216.21222091322045 -2.334880237837347 -0.061869202066954454 TADGRVS(ph)PAGGTLDDKPK ddPTM_BT-474_Trastuzumab_2h_R1 5 TADGRVSPAGGTLDDKPK 18 2 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK 165.62 1.4457e-11 5150980000.0 7297850.0 4944370.0 4589660.0 4134230.0 3915160.0 7583360.0 7294450.0 6121430.0 12081740.0 6842420.0 True False 7258559.18646735 5108940.366515224 5235844.233960136 4657623.094107843 4413732.419028594 7059140.172509306 6941589.585994961 6578242.190591702 9104357.064021707 6405730.897509514 1.1331352038671196 0.7975577569924971 0.8173687464760315 0.7271025225113158 0.6890286978406492 1.1020038595835848 1.083653012756715 1.0269307743085583 1.4212830994135879 1.0 22.610931761601123 2.70004393354597 12.788363163446954 1.1164084947676767 0.8241598120015033 0.4729482932960627 0.15481798837206304 1.812856392586174 600.7819077729052 0.04978357627681001 0.04699160654075741 501.2379366572411 -2.70004393354597 -0.29224868276617333 TADSSSS(ph)EDEEEYVVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TADSSSSEDEEEYVVEK 17 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 1 TADSSS(0.006)S(0.994)EDEEEYVVEK;TADSSS(0.004)S(0.996)EDEEEYVVEK 431.35 8.825899999999994e-161 381900000.0 525570.0 440300.0 418480.0 405230.0 472540.0 584800.0 530850.0 554820.0 763690.0 593360.0 True False 522740.389516317 454955.1193330292 477398.34650663374 456532.07645083184 532715.1680359867 544374.1524711264 505170.75745606935 596223.485718875 575488.8324217142 555491.256798946 0.9410416151797637 0.8190140056474288 0.8594164906531065 0.8218528570217779 0.9589982947810773 0.9799868959380521 0.9094126168018346 1.0733264987007196 1.0359998026575712 1.0 19.08340467881073 2.5904839334233123 0.9510799431190824 1.032637019892811 0.8576737574432848 0.6137834006126504 0.051464681670835434 0.3449459775853201 0.6443367427043559 0.03188387447202199 0.02529615964400411 389.47889879770077 -2.5904839334233123 -0.1749632624495262 TADSVS(ph)PLEPPTK ddPTM_BT-474_Trastuzumab_2h_R1 6 TADSVSPLEPPTK 13 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-9;Q9UMZ2-6 Q9UMZ2-4;Q9UMZ2-9 SYNRG Synergin gamma 1 TADS(0.001)VS(0.999)PLEPPTK;TADS(0.002)VS(0.998)PLEPPTK;TADSVS(1)PLEPPTK;TADSVS(1)PLEPPTK;TADS(0.008)VS(0.992)PLEPPTK;TADS(0.036)VS(0.964)PLEPPTK 299.25 8.222000000000001e-41 1373824000.0 3593220.0 3186220.0 2963640.0 2667280.0 2759450.0 3234310.0 2933190.0 2732160.0 3462220.0 2706800.0 True False 3573874.502764269 3292271.4065893376 3380894.7515793345 3004957.374517623 3110849.600958446 3010729.762446799 2791300.393826064 2936047.652827366 2609002.2723711296 2534049.706591931 1.4103411205657874 1.299213428223216 1.334186437931533 1.1858320563723355 1.2276198027473813 1.1881099864043154 1.1015176168663685 1.1586385401950483 1.0295781750390378 1.0 21.273013393230816 7.999999999999999 0.14608331644061623 0.9404738262264676 2.6244169756266844 0.9027072121593329 0.03861095058790957 18.450843533643038 0.17773414021630782 0.13450026333350854 6.553242335785612 99999999.99999979 -7.999999999999999 1.6839431494002168 TAEALDKDGWLHTGDIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TAEALDKDGWLHTGDIGK 18 1 E7EPM6;P33121-2;P33121;P33121-3;B7Z3Z9;H0Y9U7 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 ; 218.79 4.6146e-19 3771800000.0 4515540.0 3994330.0 3660870.0 3618140.0 3773240.0 5158610.0 4956730.0 4698660.0 7194490.0 4810270.0 False True 4491228.834363658 4127278.8594265226 4176288.6751475297 4076196.153023745 4253739.7482543355 4802007.432761756 4716954.033352585 5049297.868512033 5421504.340726865 4503274.450320655 0.9973251428288723 0.9165061789944072 0.9273893299685873 0.9051627205917908 0.9445881647189966 1.0663368368365447 1.0474498246529733 1.1212503089063335 1.2039027157984628 1.0 22.102542974174902 2.5694819196624534 1.711999823917909 1.1091961294665804 0.931384658420324 0.6513018473582437 0.05462030086465586 0.20646425308751956 1.217434993346893 0.02249954910448662 0.01914771110402775 371.0922800372494 -2.5694819196624534 -0.1778114710462564 TAEHEAAQQDLQSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAEHEAAQQDLQSK 14 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 0 166.64 1.9655e-07 0.0 222140.0 205960.0 210150.0 190990.0 175410.0 224100.0 249830.0 203690.0 273750.0 243600.0 False True 220944.0229220742 212815.25409455088 239737.2933434552 215169.31441735433 197747.4237634748 208608.49447465685 237744.76845672002 218890.38211686208 206287.98056206654 228053.2394435472 0.9688265049914678 0.9331823332736812 1.0512338870011986 0.9435047489014854 0.8671107862619317 0.9147359405359214 1.0424967829302503 0.9598214112237887 0.9045606239376903 1.0 17.79901113792758 -0.13399426826160019 7.572439837261463 0.9999999992266829 0.9563745961027027 0.05886691843874192 0.05447224415535265 0.0 0.0 0.05368062522867865 0.012652644800113664 0.7345235621995229 0.13399426826160019 -0.04362540312398022 TAEHFQEAMEESK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAEHFQEAMEESK 13 0 A0A5F9UP49;Q9BRK5;A0A5F9UJX7;Q9BRK5-6;G3V1E2;Q9BRK5-4;Q9BRK5-3;H0Y3T6;Q9BRK5-2 A0A5F9UP49 SDF4 45 kDa calcium-binding protein 0 99.566 0.0014944 0.0 201940.0 175160.0 158240.0 157910.0 170180.0 198870.0 218370.0 190080.0 280110.0 185460.0 False True 200852.77747764302 180990.0947135442 180518.8165532635 177901.38980912286 191851.41426411326 185122.58498962538 207806.60884559058 204264.7348066826 211080.64378170017 173623.78401970552 1.1568275545408406 1.0424268526079505 1.0397124885423268 1.0246372109303403 1.1049834868380648 1.0662282591918097 1.1968786996486924 1.1764789942805272 1.2157357643912625 1.0 17.405605064713264 2.249609243408891 24.920330673746783 1.1647797995517772 1.0689185088774495 0.21814648088490995 0.06593000929648339 227.17940123603455 512405.9596876758 0.021635875656879508 0.017936981914081215 177.66801221910276 -2.249609243408891 -0.09586129067432769 TAENATSGETLEENEAGD ddPTM_BT-474_Trastuzumab_2h_R1 2 TAENATSGETLEENEAGD 18 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ; 340.88 4.7136999999999985e-75 1026730000.0 1546460.0 1596750.0 1491320.0 1521790.0 1533040.0 1722340.0 1667330.0 1568980.0 1749370.0 1729310.0 False True 1538134.0311878568 1649896.8584942406 1701284.8932141878 1714448.457967355 1728263.5569600195 1603278.689752256 1586674.8780808637 1686065.2547190052 1318261.2038570314 1618943.9552632226 0.9500847921185592 1.0191191937993835 1.0508608946488067 1.0589918523081945 1.0675252539418654 0.9903237752857111 0.9800678231772932 1.0414599277742567 0.8142722912496971 1.0 20.626621612491935 1.2647905021234152 24.99999977470448 0.9071359843801148 1.0217004325055714 0.4047143725013034 0.054618663700728654 170.84075275411874 162830.66114943707 0.03453819672065951 0.012602829808271777 18.39884251697021 -1.2647905021234152 0.11456444812545663 TAENFR ddPTM_BT-474_Trastuzumab_2h_R1 5 TAENFR 6 0 C9JQD4;O43447;A6NM32;R4GN99;H0Y548;P30405-2;P30405;P49792;P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37;Q08752 C9JQD4;P30405;P49792;P62937;Q08752 PPIH;PPIF;RANBP2;PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D;PPID Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;E3 SUMO-protein ligase RanBP2;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase D 0 ;;;; 168.82 0.014504 63206000000.0 20298160.0 22757260.0 20123320.0 20087120.0 20223100.0 20548030.0 22314330.0 20247480.0 23565920.0 21710870.0 False True 20188876.961897608 23514721.642045822 22956508.540967006 22630147.332421176 22798391.913295265 19127593.0509598 21234900.60888136 21758449.77222018 17758414.78314965 20325263.688989058 0.9932897929798895 1.1569208646864744 1.1294568617775615 1.1133999380623416 1.1216775468278914 0.9410747798230003 1.04475400338275 1.0705125456260394 0.8737114093516058 1.0 24.2767707333792 2.7555532126666846 24.385580097154715 1.001865031239856 1.1080007133833996 0.4332900563349489 0.06550006443700801 624.0927132236171 895615.9258410649 0.019922456232491653 0.021077769108282386 569.5780083624356 -2.7555532126666846 0.10613568214354352 TAESQT(ph)PTPSATSFFSGK ddPTM_BT-474_Trastuzumab_2h_R1 6 TAESQTPTPSATSFFSGK 18 0 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 TAESQT(0.997)PT(0.003)PSATSFFSGK;TAESQT(0.803)PT(0.196)PS(0.001)ATSFFSGK;TAESQT(0.651)PT(0.348)PS(0.001)ATSFFSGK;TAESQT(0.999)PT(0.001)PSATSFFSGK;TAES(0.006)QT(0.882)PT(0.111)PS(0.002)ATSFFSGK;TAESQT(0.996)PT(0.003)PSATSFFSGK 238.19 7.963800000000002e-23 1474440000.0 2488700.0 2327430.0 2200770.0 2094720.0 2206140.0 2277680.0 1829420.0 1760470.0 2412090.0 1897940.0 True False 2475301.115720561 2404897.1005888535 2510619.2865642416 2359911.3372235205 2487078.852183753 2120229.342682002 1740923.965536934 1891845.2108855245 1817662.739850063 1776811.8442918172 1.3931138086864454 1.3534900210817606 1.4129910798545458 1.3281717728328792 1.399742387002731 1.1932773576974103 0.9798020939188489 1.0647414451694834 1.0229911206915259 1.0 20.76085948441092 2.502480997712195 3.0313457618312545 1.02559297137282 1.3751182821334027 0.9631343123954588 0.03317299046533361 0.04241217315018066 0.7927360019420393 0.011457134973264142 0.01000805507977826 318.039452907962 -2.502480997712195 0.3495253107605827 TAESQTPTPSATSFFSGKS(ph)PVTTLLECMHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAESQTPTPSATSFFSGKSPVTTLLECMHK 30 1 A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ISX1;A0A3B3ITG9;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 TAESQTPTPSATSFFS(0.001)GKS(0.994)PVT(0.004)T(0.001)LLECMHK 235.05 1.2342999999999996e-45 234620000.0 593790.0 457120.0 435860.0 401020.0 412710.0 638650.0 614430.0 555880.0 943400.0 630640.0 True False 590593.1006162713 472334.9628651242 497225.2994369654 451789.0908824928 465266.1721761797 594501.6287203918 584707.6735494625 597362.5883014456 710911.7109123407 590392.015281933 1.0003405962972622 0.8000361634964992 0.8421951628182552 0.7652357741775142 0.7880631176117765 1.0069608215085637 0.990371919698548 1.0118066857936483 1.204135036570329 1.0 19.171313684332656 2.636042676871702 4.440996034020298 1.0408286236783322 0.8333789408854507 0.6049733492947628 0.08241897600531278 0.16181456693915733 5.362063960355444 0.02744678150850905 0.025809246951345028 432.5563350156007 -2.636042676871702 -0.20744968279288145 TAFDDAIAELDTLNEDSYK ddPTM_BT-474_Trastuzumab_2h_R1 4 TAFDDAIAELDTLNEDSYK 19 0 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ;;; 380.78 1.9310999999999995e-108 261321000.0 491952.0 380748.0 363426.0 327342.0 345129.0 476849.0 463989.0 476022.0 659150.0 475056.0 False True 489303.3850930061 393420.96701297344 414593.2218445797 368783.4636368683 389079.13241014956 443885.5510118064 441544.07945989294 511545.17883073795 496711.3146574834 444737.51936409634 1.1002071194547107 0.884613844983222 0.9322200259545941 0.8292159927594366 0.8748511548260435 0.9980843344327951 0.9928194951737611 1.1502181771445006 1.1168639771335265 1.0 18.762594594253766 2.140698881133477 2.0544440948737175 1.1007548832259892 0.9207806945873144 0.41872779360643364 0.0790835126573812 0.27081601167121655 2.245448151961989 0.040193599709594664 0.02408844765789946 138.26074132028788 -2.140698881133477 -0.17997418863867487 TAFDEAIAELDTLNEDSYK ddPTM_BT-474_Trastuzumab_2h_R1 4 TAFDEAIAELDTLNEDSYK 19 0 P27348 P27348 YWHAQ 14-3-3 protein theta 0 ;;; 282.19 9.7859e-40 144965000.0 356576.0 294961.0 266522.0 252213.0 264125.0 358947.0 347013.0 333581.0 492300.0 358096.0 False True 354656.2344353175 304778.59857730987 304045.9809492475 284143.13994001836 297759.7531584732 334133.83876035106 330226.6554716079 358474.5081099957 370979.2614820282 335242.00669859024 1.0579110831841019 0.9091300985181447 0.9069447589323419 0.847576181571679 0.8881934459549496 0.9966944239800011 0.9850396098138993 1.06930068710719 1.1066013628046578 1.0 18.3548434082555 2.197813046937797 1.6666879564162411 1.0627681655198777 0.9188058480596183 0.4760515694969689 0.05924667770353793 0.30591265188244676 1.670309680143514 0.033292172563834016 0.019699129787802857 157.69322931127385 -2.197813046937797 -0.14396231746025945 TAFDEAIAELDTLNEESYK ddPTM_BT-474_Trastuzumab_2h_R1 5 TAFDEAIAELDTLNEESYK 19 0 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;; 249.16 5.5312e-25 252774000.0 450747.0 377021.0 340700.0 309735.0 343877.0 438460.0 433016.0 422908.0 592577.0 417057.0 False True 448320.2282346998 389569.9160709928 388667.59858251316 348947.4192421553 387667.69763133494 408150.2922238201 412069.36179824267 454467.5424433111 446544.3384749865 390440.0651995383 1.1482434007011582 0.997771363120481 0.9954603362333747 0.8937285139111484 0.9928993773556858 1.0453596559441993 1.0553972261726021 1.1639879790795826 1.143694969538476 1.0 18.574741577795862 2.18663060253961 2.2518536470935806 1.1178369363466019 1.0008884043003385 0.22654704351837707 0.0719630918508383 0.35791096929348304 3.6486572700206956 0.03437122527729695 0.022244744852568478 153.68468897619252 -2.18663060253961 -0.11694853204626332 TAFDEAIAELDTLNEESYKDSTLIMQLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAFDEAIAELDTLNEESYKDSTLIMQLLR 29 1 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 86.98200000000001 0.0019831 900520000.0 282700.0 275490.0 282220.0 313550.0 269550.0 286190.0 311370.0 251220.0 435950.0 323500.0 False True 281177.97461092245 284659.51811277855 321954.1228997852 353245.3978509943 303875.59475197864 266406.3589187956 296307.8435510901 269967.31206931185 328515.96393071313 302853.95303771587 0.9284276192885156 0.9399234028730955 1.063067262852239 1.1663885985566216 1.0033733808128156 0.8796529028155651 0.9783852598885822 0.8914108908318972 1.0847339472891129 1.0 18.208262716901118 2.9887210690157344 24.9818943715172 0.9540840160664019 1.0291358223356268 0.08907153740566875 0.08205291523771739 1088.077977984241 2410008.887909073 0.02544055870320675 0.02849818777880047 974.3636396535103 -2.9887210690157344 0.07505180626922492 TAFDEAIAELDTLS(ph)EESYK ddPTM_BT-474_Trastuzumab_2h_R1 4 TAFDEAIAELDTLSEESYK 19 0 B7Z2E6;H0YB80;P63104-2;P63104;E7EX29;B0AZS6 B7Z2E6;P63104 YWHAZ 14-3-3 protein zeta/delta 1 TAFDEAIAELDTLS(1)EESYK;TAFDEAIAELDTLS(1)EESYK;TAFDEAIAELDT(0.008)LS(0.992)EESYK;TAFDEAIAELDTLS(1)EESYK 242.71 1.2998e-24 208870000.0 449027.0 352710.0 309559.0 253990.0 274109.0 410577.0 362287.0 385042.0 505440.0 364730.0 True False 446609.4885235899 364449.7391323022 353142.2164649375 286145.1079578184 309015.1563786691 382194.7783842985 344761.7937392615 413775.7892436591 380881.08454900736 341452.6191389368 1.3079691397589335 1.0673508378742524 1.034234903089861 0.8380228820016349 0.9050015699335756 1.1193200958543057 1.0096914605858631 1.211810266054202 1.115472727986389 1.0 18.38132587469242 -0.0679862505847581 8.270659102570917 1.0000000060347738 1.0648504091215676 0.023638170843121697 0.12931431942837157 0.0 0.0 0.13175538878403792 0.03105504295568774 0.8550937840400633 0.0679862505847581 0.0648504030867938 TAFDEAIAELDTLSEESYK ddPTM_BT-474_Trastuzumab_2h_R1 5 TAFDEAIAELDTLSEESYK 19 0 B7Z2E6;H0YB80;P63104-2;P63104;E7EX29;B0AZS6 B7Z2E6;P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;;; 372.73 1.0520999999999993e-107 3000940000.0 4708988.0 4164658.0 3954724.0 3449531.0 3350959.0 4898663.0 4642126.0 4676024.0 6363540.0 4679223.0 False True 4683635.331825748 4303276.123941079 4511514.76412278 3886241.2709116205 3777683.7659599213 4560029.957022337 4417568.630736573 5024972.655248751 4795330.834067334 4380590.9820556445 1.0691788735838323 0.9823505872994596 1.0298872418364196 0.8871499957039941 0.8623685209220785 1.0409622755700623 1.008441246588052 1.14709925574716 1.0946766894491182 1.0 22.062694085124615 2.1487559299258603 2.3006840113949445 1.0919800115487543 0.9683821447486933 0.2831971574048814 0.07008634128591396 0.33369446948130976 3.5128397466684933 0.034817395361322036 0.02186342568429157 140.8497011740081 -2.1487559299258603 -0.12359786680006102 TAFPSLPDTDDHKTDNTGTLPEDVAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAFPSLPDTDDHKTDNTGTLPEDVAFR 27 1 A8MXV4 A8MXV4 NUDT19 Nucleoside diphosphate-linked moiety X motif 19, mitochondrial 0 254.6 4.6646999999999995e-53 469080000.0 82778.0 80841.0 85592.0 79240.0 83218.0 98766.0 90766.0 84778.0 125840.0 105380.0 False True 82332.33244550039 83531.74381558347 97642.6096209992 89271.77587533969 93815.3190282701 91938.5388901561 86375.30182020814 91104.56485396106 94828.41816960886 98654.55817964283 0.8345517324762547 0.8467094208001843 0.9897425057968335 0.9048925617079165 0.9509476374871516 0.9319238825513024 0.8755328026802872 0.9234704055748364 0.9612167944326826 1.0 16.59009808950736 7.999999999999999 0.07738655387894482 1.0506177057805053 0.5823033787723045 0.39649587292002464 0.04177520650951783 256.69538160610006 1.451857283679991 1.3752404742895188 12.904606999369348 99999999.99999979 -7.999999999999999 -0.46831432700820075 TAFQEALDAAGDKLVVVDFSATWCGPCK ddPTM_BT-474_Trastuzumab_2h_R1 3 TAFQEALDAAGDKLVVVDFSATWCGPCK 28 1 P10599;P10599-2 P10599 TXN Thioredoxin 0 ;; 202.85 3.3407e-25 330119000.0 388255.0 313643.0 293183.0 253254.0 257856.0 395545.0 383720.0 367190.0 534453.0 374649.0 False True 386164.6782191856 324082.4176538029 334460.6180076812 285315.9304332827 290692.43316774705 368201.905162776 365157.99764725 394591.58235303994 402744.2194532901 350738.58006685344 1.1010042811531588 0.9239999135311272 0.9535894738010585 0.8134717611586935 0.8288008496594211 1.0497901459616845 1.041111581103077 1.1250304493957517 1.1482746476778345 1.0 18.420036605369276 2.566127201606279 5.474238741277052 1.0862754955164038 0.9198992989910384 0.44724315607956744 0.08278956119265271 0.20477575219393251 9.752452985363304 0.02834357428959452 0.02646764674647081 368.23681165790185 -2.566127201606279 -0.1663761965253654 TAFYLAEFFVNEAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAFYLAEFFVNEAR 14 0 Q92820 Q92820 GGH Gamma-glutamyl hydrolase 0 154.28 1.4333e-05 29172000.0 38201.0 50040.0 50932.0 44572.0 41901.0 38131.0 50284.0 42418.0 60598.0 47700.0 False True 37995.330060530076 51705.55115018123 58102.782891119925 50214.81062992988 47236.84398331542 35495.093720719095 47851.57081646601 45583.44655423957 45664.434871598525 44655.74516197541 0.8508497601532197 1.157870078365835 1.3011267123719332 1.1244871280904758 1.057799927242908 0.7948606297346785 1.0715658342033862 1.0207745137585142 1.0225881284919645 1.0 15.446558176026759 2.997602670524551 18.884911316742922 0.9870657867029191 1.121518733040654 0.18643628481484253 0.123894891002977 6.746664628708773 53167.965648829646 0.03707164833348082 0.04325299889697933 994.4951523960988 -2.997602670524551 0.13445294633773486 TAFYNEDDS(ph)EEEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TAFYNEDDSEEEQR 14 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR 394.62 3.0660999999999984e-114 3087900000.0 1264680.0 1503070.0 1429130.0 1600690.0 1848110.0 2285410.0 1395660.0 1864670.0 2460100.0 1759720.0 True False 1257871.1033991585 1553098.7763249993 1630339.0817793573 1803337.1898775557 2083455.8538938228 2127424.985976466 1328146.5938610472 2003821.1440024024 1853841.318651102 1647413.1630279128 0.7635431910032916 0.9427500102466307 0.9896358232216782 1.0946477971336939 1.2646832626154765 1.2913730651916735 0.8062012758353466 1.216344016773193 1.125304422870932 1.0 20.651770990508492 4.421104520993929 1.3227403546943843 1.1215542509563428 0.7269881822102912 0.4039162760095123 0.13346293627164596 0.7772928310156956 1.8060746395918152 0.03826268546480084 0.3561538458535101 26369.659440554595 -4.421104520993929 -0.3945660687460516 TAGAPDPAWDWQHVGPGYR ddPTM_BT-474_Trastuzumab_2h_R1 4 TAGAPDPAWDWQHVGPGYR 19 0 H3BM67;H3BUP2;H3BUN4;O60936;O60936-3 H3BM67 NOL3 Nucleolar protein 3 0 ;;; 228.08 1.1193e-19 2959280000.0 1522320.0 1556460.0 1424740.0 1299040.0 1483460.0 1731120.0 1676790.0 1444130.0 1855280.0 1610890.0 False True 1514123.9982656527 1608265.8302000612 1625331.00793792 1463498.3308064272 1672369.8378437045 1611451.7490181522 1595677.2617401555 1551898.3137435534 1398071.103478322 1508081.6210476842 1.0040066645821004 1.0664315563256965 1.0777473747135657 0.9704370840284596 1.1089385445078808 1.068544120243741 1.0580841510631351 1.0290545896749468 0.9270526767026466 1.0 20.524283082210655 1.4038922874818733 5.023809343991107 0.9645159528926568 1.05132866014945 0.42106030355826163 0.04013570483825199 0.18331411726675825 7.375337715793601 0.02673812580051285 0.009682559941754602 25.34499952860227 -1.4038922874818733 0.08681270725679324 TAGCCVQCSHGR ddPTM_BT-474_Trastuzumab_2h_R1 4 TAGCCVQCSHGR 12 0 O75164-2;O75164 O75164-2 KDM4A Lysine-specific demethylase 4A 0 ;;; 141.38 0.00016835 55366000.0 77804.0 85693.0 82825.0 85546.0 78344.0 87151.0 88040.0 81073.0 107371.0 84697.0 False True 77385.11190883695 88545.2397024876 94486.04007219433 96376.11482877105 88320.64401873139 81126.45650138696 83781.16885453953 87123.07894035244 80910.85574768813 79291.56494725023 0.9759564205892319 1.1167044030647333 1.1916278879733604 1.2154649097023946 1.113871873729417 1.0231410687297875 1.0566214566489647 1.0987685638228004 1.0204219805916954 1.0 16.27487977945058 2.877769260330919 5.694612525220257 1.0519961977450618 1.1330971181860772 0.27872334977272906 0.0647887612971837 0.34000089642917186 14.473918258380492 0.02094026007820082 0.022319401870769428 754.6911554384967 -2.877769260330919 0.08110092044101536 TAGTICLETFKDFPQMGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TAGTICLETFKDFPQMGR 18 1 P15170-2;P15170-3;P15170;H3BR35;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 ; 175.8 2.2305e-12 660730000.0 648340.0 660460.0 602260.0 563050.0 571710.0 694360.0 750620.0 666160.0 998420.0 808270.0 False True 644849.4094773461 682443.0118434998 687052.973062238 634332.0722691831 644513.8797093455 646360.5275476255 714309.6429531394 715872.2418919391 752372.7691425682 756685.5166052387 0.8522026592637464 0.9018845965298541 0.9079769045198629 0.8383034409261898 0.8517592388986971 0.8541996818538692 0.943998037860943 0.9460630951463133 0.9943004757352579 1.0 19.529334305820754 1.8289751393549918 1.4933651149917249 0.9924793733378909 0.8692541254346459 0.8057847303040189 0.025205054393049955 0.17720116086103532 0.7470484840921158 0.01981917569038764 0.008285820043657605 67.44894162888744 -1.8289751393549918 -0.12322524790324507 TAHETDKSEGGKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TAHETDKSEGGKR 13 2 P83916;J3KS05;K7ELA4;B5MD17;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 0 ;;; 216.84 1.6096000000000006e-11 922294000.0 1055802.0 1005264.0 898028.0 973408.0 958672.0 1088986.0 1253197.0 1135026.0 2140690.0 1320134.0 False True 1050117.6793426299 1038723.6045450782 1024462.5366006943 1096641.352994229 1080753.1967058768 1013706.9610173071 1192575.0734325578 1219727.4036652436 1613145.633276382 1235881.9178964188 0.8496909487356396 0.8404715608373642 0.8289323775724633 0.8873350577543931 0.8744793341951431 0.8202296241559442 0.9649587522588136 0.9869287558971074 1.3052587062865193 1.0 20.23710947712687 1.6312079333653557 2.1570237437178714 1.1468836624614795 0.8568759175580337 0.6664182889982022 0.07992016409302262 0.14631967299300702 1.4784529163093847 0.05368818750202856 0.020402214423868834 42.7767645548679 -1.6312079333653557 -0.29000774490344583 TAHNSEADLEESFNEHELEPSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 TAHNSEADLEESFNEHELEPS(0.022)S(0.978)PK 319.77 1.3267e-73 1033100000.0 365590.0 426610.0 479310.0 401240.0 465620.0 654530.0 599110.0 403800.0 724420.0 573820.0 True False 363621.7040608679 440809.45595880866 546792.6817627951 452036.94285993587 524913.9470540403 609283.881697891 570128.7604775468 433933.6064548523 545896.3977306751 537198.3163279817 0.6768854127213271 0.8205711793215605 1.0178600065249566 0.8414712576722759 0.9771325246178894 1.1341879957157166 1.061300348770006 0.807771717195625 1.0161915648994382 1.0 19.03509525755459 4.507213457646963 2.656309164064802 0.9714667997276766 0.6722828268591988 0.528339647195087 0.09207305026453161 0.27369868502953365 3.3671899454482883 0.024805248110963747 0.14246783789420486 32152.404551580854 -4.507213457646963 -0.29918397286847775 TAHSLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TAHSLFK 7 0 P55060-3;P55060;P55060-4;P55060-2 P55060-3 CSE1L Exportin-2 0 ; 97.602 0.011877 1513120000.0 2805900.0 2950600.0 3166600.0 2369600.0 2045780.0 2691100.0 3064100.0 2026010.0 4835700.0 2790500.0 False True 2790793.3461647965 3048808.9373246343 3612429.755419388 2669591.117039435 2306297.9567119386 2505070.5911680018 2915877.7770013004 2177201.154070325 3644006.5300602186 2612407.9009327563 1.0682839173654115 1.1670493479353135 1.3827969798014985 1.0218890840462784 0.8828245986733076 0.9589124999482547 1.1161648132974145 0.8334078124985608 1.394884209605679 1.0 21.316948745958957 3.5269458022586133 22.034778440533152 1.007498968266993 1.2021778803572236 0.1913707829022151 0.16184213470721293 139.530037627608 61705.56643940228 0.041429842984715096 0.06417960106230852 3364.695770642764 -3.5269458022586133 0.19467891209023058 TAIHEVMEQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TAIHEVMEQGR 11 0 P25205;P25205-2;J3KQ69;A0A499FHX9 P25205 MCM3 DNA replication licensing factor MCM3 0 ; 138.75 5.094100000000001e-05 419880000.0 246684.0 284520.0 280400.0 261737.0 237616.0 275970.0 329760.0 226935.0 333810.0 271010.0 False True 245355.88075316875 293990.07620402763 319877.88271950895 294872.8773635011 267874.9891396259 256892.84346350332 313808.2489944681 243870.04205258074 251546.9983248342 253713.9097766655 0.9670572692255857 1.158746386679452 1.2607818112971616 1.1622259009096751 1.0558151477600335 1.012529599538457 1.2368586699511324 0.961200914318218 0.9914592327486548 1.0 17.95284309125966 1.6478114719640737 9.423105666256145 0.9824140951138611 1.123171620934975 0.34059869371436 0.08764349736542563 0.12853799447546704 20.623305110498954 0.04362797558738986 0.0230974010639398 44.443829410357296 -1.6478114719640737 0.14075752582111378 TALAEAELEYNPEHVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TALAEAELEYNPEHVSR 17 0 Q9NSE4 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial 0 186.94 4.412e-15 0.0 40252.0 57011.0 60448.0 56456.0 68141.0 91532.0 54067.0 56521.0 67699.0 64223.0 False True 40035.28770441763 58908.57667112271 68958.55297656512 63603.323811435934 76818.35244665043 85204.60828315165 51451.57265400259 60738.884027822525 51015.48857012358 60124.23315592343 0.6658760636595887 0.9797809232485661 1.1469344282151785 1.0578650316668488 1.277660411026503 1.4171425365573633 0.8557543265553249 1.0102230139102994 0.8485012763127033 1.0 15.875658967946448 TALAPLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TALAPLLK 8 0 Q8N139;Q8N139-2;Q8N139-3 Q8N139 ABCA6 ATP-binding cassette sub-family A member 6 0 ; 77.282 0.033615 685540000.0 454000.0 1252150.0 1141870.0 1407610.0 1349550.0 811720.0 837100.0 546500.0 195168.0 755400.0 False True 451555.7144441422 1293827.055809341 1302635.370688036 1585813.2816744933 1521407.1930904575 755607.7069833499 796606.2749674583 587282.60507077 147071.46151721422 707189.7252695219 0.6385213165703825 1.829533164266833 1.8419885416061152 2.2424156135330064 2.151342332512854 1.0684653353742872 1.1264392658757283 0.8304456132291044 0.2079660609621595 1.0 19.43173778846142 2.3293596076928402 1.8342175055005827 0.7181623863722543 1.765772640566703 0.474379494715817 0.47046643769098706 0.3047486673193247 2.0860478380951095 0.22867261651164944 0.15919802885763434 213.48118640350606 -2.3293596076928402 1.0476102541944488 TALATS(ph)PITVGDLGIVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TALATSPITVGDLGIVR 17 0 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 1 TALAT(0.051)S(0.949)PIT(0.001)VGDLGIVR;TALAT(0.003)S(0.996)PITVGDLGIVR 182.36 7.887000000000001e-10 165068000.0 308130.0 322020.0 302400.0 307670.0 290050.0 309750.0 300650.0 332370.0 419850.0 357130.0 True False 306471.0623164612 332738.2410347995 344975.2914920812 346620.9904538839 326986.14823895914 288337.71157306986 286106.4109054668 357173.1371406621 316383.5932017662 334337.65764562465 0.916651341265601 0.9952161637367202 1.0318170376659506 1.036739303896418 0.9780117218669468 0.8624147025600339 0.8557409085180596 1.0683006504736643 0.9462996045067452 1.0 18.350946334444096 4.751540385237685 22.319766148775873 0.9760872342443699 0.9166511711249445 0.06405695279689538 0.06672422783622971 1512.2540560615098 2600226.389664617 0.017053748873614293 0.27351273549376454 56433.941707943675 -4.751540385237685 -0.0594360631194254 TALIHDGLAR ddPTM_BT-474_Trastuzumab_2h_R1 10 TALIHDGLAR 10 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 ;;;;;;;;; 188.99 1.0606e-06 18503630000.0 8895840.0 9904320.0 9183480.0 9105450.0 8829230.0 9547540.0 9893610.0 8530790.0 11689280.0 9608650.0 False True 8847945.78586074 10233979.303912135 10476434.159760883 10258199.036397167 9953580.105553765 8887541.032291675 9415018.28703953 9167400.868273878 8808613.572327126 8995417.730620869 0.9836058814413781 1.1376880552278454 1.164641206611068 1.140380507453003 1.106516718136531 0.9880075943597398 1.046646033456603 1.0191189717702125 0.9792334092881699 1.0 23.10075884845538 2.759977390123996 12.828015778920355 1.0120446534205794 1.1134117460699235 0.5073761516386293 0.04887221844184986 1.5168154591196676 906.993408906093 0.015113904444026546 0.015892461593603774 575.409980044341 -2.759977390123996 0.10136709264934418 TALINSTGEEVAMR ddPTM_BT-474_Trastuzumab_2h_R1 2 TALINSTGEEVAMR 14 0 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ; 220.31 7.1348e-08 130860000.0 111197.0 107636.0 95213.0 100332.0 111120.0 122690.0 111187.0 103761.0 141562.0 124781.0 False True 110598.32770714824 111218.59919266398 108618.16279376826 113034.02091272842 125270.4733401592 114208.72908119453 105808.46003441256 111504.17270768208 106675.94193361553 116817.36974961116 0.9467626941456314 0.9520724480533358 0.9298117482578383 0.9676131311208936 1.0723617010780726 0.9776690686153262 0.9057596508225162 0.9545170632302585 0.9131856175350208 1.0 16.833895281090395 3.709382303841681 20.36688107396767 0.968010866879027 0.943801336157308 0.07319447290535097 0.04397935294479108 242.72101574958302 169421.7909540851 0.01275341180759901 0.01976908547497391 5121.324607838774 -3.709382303841681 -0.024209530721719053 TALPTS(ph)GSSAGELELLAGEVPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 TALPT(0.014)S(0.467)GS(0.326)S(0.193)AGELELLAGEVPAR;TALPT(0.007)S(0.472)GS(0.471)S(0.049)AGELELLAGEVPAR 109.66 1.0066e-05 43028000.0 32963.1 38442.7 38053.6 35317.5 39460.0 40654.6 43804.0 38464.8 48902.0 44090.0 True False 32785.63033214468 39722.24203039709 43411.21611217937 39788.69187881513 44484.99710225592 37844.24319263449 41685.03317246989 41335.23869629673 36850.75735322803 41276.1384526519 0.7942998439583506 0.9623536386758345 1.051726681311931 0.9639635239729842 1.0777412512385314 0.9168552246244119 1.009906322033662 1.0014318258892512 0.8927859711368045 1.0 15.333020386749633 4.720203889904256 3.9397915859411126 0.9914601642809352 0.7792795623624607 0.5483161374326107 0.05267793562090572 0.15154944255776429 4.807302351547251 0.011825466860173875 0.08941357397442054 52505.390147515296 -4.720203889904256 -0.21218060191847454 TALPTSGS(ph)SAGELELLAGEVPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 TALPT(0.002)S(0.03)GS(0.847)S(0.121)AGELELLAGEVPAR 124.2 7.750399999999998e-07 0.0 11101.0 12362.0 9245.5 10317.0 11920.0 12037.0 11139.0 9650.8 11801.0 11332.0 True False 11041.23344943705 12773.461697013186 10547.186036673384 11623.131142174158 13437.941344624704 11204.91052205019 10600.164014887727 10370.991701769428 8892.80167529843 10608.78205818669 1.0407635286386754 1.2040460089531233 0.9941938649342151 1.095614093910498 1.2666808754219603 1.0561919794933927 0.9991876500759752 0.977585517817876 0.8382490682270114 1.0 13.37297141662462 2.0994468641403596 1.9244313528620138 0.9348983260657154 1.1179374961223008 0.47920314285285337 0.08262581020878705 0.2959979685800978 2.109713912085756 0.04506800653288804 0.025365603129348487 125.73230116893524 -2.0994468641403596 0.18303917005658532 TALPTSGSS(ph)AGELELLAGEVPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 TALPTSGS(0.022)S(0.978)AGELELLAGEVPAR;TALPTS(0.001)GS(0.036)S(0.963)AGELELLAGEVPAR 228.15 7.7066e-33 102215000.0 74874.0 83425.0 75158.0 87617.0 81088.0 89556.0 93753.0 79303.0 101414.0 80858.0 True False 74470.88670328345 86201.75069352255 85739.5931149531 98709.3032164266 91414.07615376913 83365.20451214814 89217.80921876019 85220.99255247452 76421.87857797768 75697.57321398337 0.9837949030779058 1.1387650493080639 1.132659733655962 1.3039956107627548 1.2076222826240155 1.1012929605614932 1.1786085792546817 1.1258087800459622 1.0095684093061588 1.0 16.207959429188833 1.2770423233276795 3.3957210607614936 0.9976315295291944 1.154605909229884 0.35691529428944113 0.07648961816921954 0.2555150865249921 5.083940740694939 0.06757402660321662 0.020164409033821492 18.92528042313799 -1.2770423233276795 0.1569743797006895 TALPTSGSSAGELELLAGEVPARS(ph)PGAFDMSGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TALPTSGSSAGELELLAGEVPARSPGAFDMSGVR 34 1 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 TALPTSGSSAGELELLAGEVPARS(1)PGAFDMSGVR;TALPTSGSSAGELELLAGEVPARS(1)PGAFDMSGVR 176.89 6.1498e-20 207881000.0 39254.0 57298.0 56482.0 71424.0 62198.0 57934.0 73061.0 37577.0 65337.0 48521.0 True False 39042.6608255294 59205.12929262757 64434.17464965512 80466.27107673236 70118.54662357115 53929.15894196686 69526.76030987634 40381.18655213968 49235.57182094516 45424.34823908193 0.8595095436490623 1.3033787294209103 1.418494202944174 1.7714347964491268 1.5436335212674106 1.1872302197517852 1.5306055673916596 0.8889766857985814 1.0839026585874962 1.0 15.471178193976037 1.7264731256704817 9.391233232265327 0.9949987203850102 1.387060856098754 0.36157166577817346 0.2321530652923942 0.1130135810971531 32.329440423291636 0.11547691469116363 0.06217386959479781 53.26882603241706 -1.7264731256704817 0.3920621357137438 TAMLLALQRPELVER ddPTM_BT-474_Trastuzumab_2h_R1 2 TAMLLALQRPELVER 15 1 Q8NFV4;Q8NFV4-4 Q8NFV4 ABHD11 Alpha/beta hydrolase domain-containing protein 11 0 ; 163.64 1.3925e-06 1199100000.0 360050.0 418770.0 396160.0 355710.0 462100.0 655080.0 366380.0 359810.0 495960.0 423020.0 False True 358111.5308053154 432708.5062981893 451935.88451555086 400742.84952823154 520945.69591871416 609795.8614924514 348656.7996924828 386660.8492781591 373737.30352351605 396022.50143435755 0.9042706651977298 1.0926361626699452 1.1411873892990427 1.0119193936626765 1.3154446881980093 1.5398010448492854 0.8803964381561137 0.976360807473587 0.9437274452079705 1.0 18.595222878947506 TAMPS(ph)PGVSQNK ddPTM_BT-474_Trastuzumab_2h_R1 4 TAMPSPGVSQNK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK 226.51 1.5881e-11 787930000.0 1717930.0 1342870.0 1254340.0 1211630.0 1113840.0 1576800.0 1546370.0 1370430.0 1819870.0 1371910.0 True False 1708680.8557599662 1387566.6161679432 1430940.1690812714 1365022.2337687782 1255680.9217530848 1467799.5273879466 1471566.1753929397 1472698.4455025352 1371387.4235086304 1284353.5292487573 1.3303820302182734 1.0803618976930418 1.114132625086689 1.0628088004454703 0.9776754555169528 1.142831388680413 1.1457641076859006 1.1466456952580217 1.0677647487843793 1.0 20.292610940547494 4.740164902842695 24.261427912024352 1.0910783135231146 1.3303821527811186 0.6319840713949064 0.05648110377116674 63.85871853806999 965593.6417708144 0.014010198726367471 0.0890608671798001 54974.957570102255 -4.740164902842695 0.23930383925800403 TANKDHLVTAYNHLFETK ddPTM_BT-474_Trastuzumab_2h_R1 2 TANKDHLVTAYNHLFETK 18 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 ; 254.62 9.9454e-31 5576100000.0 7076000.0 6152600.0 6137400.0 6046700.0 5715400.0 7973100.0 8134000.0 6529000.0 11542900.0 7767700.0 False True 7037903.602217511 6357385.571674763 7001492.572762891 6812211.600017882 6443222.312170131 7421938.363658574 7740527.345102504 7016227.133590232 8698306.96193561 7271958.735737454 0.9678140179248134 0.8742328996494307 0.9628069722610801 0.9367780879365855 0.8860366988202828 1.0206243782963258 1.0644349928805712 0.9648331884928816 1.1961436083497672 1.0 22.79391258239912 2.6118542641429667 5.115212667842143 1.0440264750286057 0.9257543440505343 0.49464434692189163 0.06274831356509644 0.20448017821730372 7.680427355595491 0.019829161198824153 0.018594570983075435 409.1233474931237 -2.6118542641429667 -0.11827213097807143 TANKDHLVTAYNHLFETKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TANKDHLVTAYNHLFETKR 19 2 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 122.49 1.0647e-05 277980000.0 77274.0 113470.0 84898.0 103170.0 104890.0 108680.0 119080.0 60603.0 173010.0 100010.0 False True 76857.96536994855 117246.78035593651 96850.90045335551 116231.31142174153 118247.11976826223 101167.20740520183 113319.64547022448 65125.503595798524 130374.00371522599 93627.27617713127 0.8208928904921121 1.2522716151019928 1.0344303968656052 1.2414257486445106 1.262955888458757 1.0805313529980938 1.2103272689022553 0.6955825936086093 1.3924788698175352 1.0 16.51464126697443 TAPAAPAEDAVAAAAAAPSEPSEPS(ph)RPSPQPKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 TAPAAPAEDAVAAAAAAPS(0.008)EPS(0.13)EPS(0.497)RPS(0.365)PQPKPR 127.47 3.3293e-08 1000700000.0 939410.0 853200.0 825790.0 791270.0 764890.0 969720.0 1061000.0 952130.0 1231600.0 1025700.0 True False 934352.3209382633 881598.2462297094 942054.0541046481 891444.7008692594 862294.2076417767 902685.5388753437 1009675.3765863968 1023182.7754181756 928088.6825944867 960238.9478540492 0.9730414737148108 0.9181029869699758 0.9810621160597153 0.9283571582484424 0.8979996172503101 0.9400634507615773 1.0514834654882814 1.0655501713451572 0.9665184740408498 1.0 19.873033928175797 2.246872827990714 24.965741374113307 1.0314481078965172 0.9382455418435153 0.5621907754960633 0.03455396775434987 114.14932285076313 342847.7626726091 0.012192173656679581 0.010042005050187729 176.5520757476981 -2.246872827990714 -0.09320256605300192 TAPAAPAEDAVAAAAAAPSEPSEPSRPS(ph)PQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPK 32 1 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 TAPAAPAEDAVAAAAAAPSEPS(0.005)EPS(0.011)RPS(0.984)PQPK 162.86 3.9002e-14 231750000.0 124720.0 86389.0 86063.0 92251.0 66975.0 118890.0 106650.0 95015.0 135290.0 123360.0 True False 124048.52137769481 89264.40564174677 98179.92232699382 103929.96714129188 75503.86925807371 110671.41413695671 101490.93205743581 102105.50177639381 101949.59229312127 115487.05918619037 1.0741335198232167 0.7729385982357819 0.8501378684230442 0.8999273847101265 0.6537864050754377 0.9583014314922524 0.8788078315667408 0.884129377749393 0.8827793608351933 1.0 16.817371675048918 0.34986577275177655 0.6988024829438514 1.0025268824633549 0.8594487013847292 0.1174048888752921 0.1037106998502974 4.527846203225012 3.187100612778475 0.12582683872413813 0.0359006925768837 2.2380293247001886 -0.34986577275177655 -0.1430781810786257 TAPAAPAEDAVAAAAAAPSEPSEPSRPS(ph)PQPKPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 TAPAAPAEDAVAAAAAAPSEPS(0.003)EPS(0.049)RPS(0.948)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.001)EPS(0.01)EPS(0.217)RPS(0.772)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.003)EPS(0.042)EPS(0.203)RPS(0.751)PQPKPR 203.21 1.5478999999999997e-27 2184110000.0 1091080.0 987340.0 901030.0 900310.0 823240.0 1146950.0 1177180.0 1038830.0 1469450.0 1225030.0 True False 1085205.7465103844 1020203.0150403655 1027887.1921068449 1014289.153689137 928074.7342742318 1067664.0461298884 1120235.3061356982 1116352.7696718546 1107323.7371211986 1146847.5365990514 0.9462511030267682 0.8895716147812924 0.8962718751221452 0.8844149909385399 0.8092398550433434 0.9309555211637113 0.9767953196793088 0.9734099207139352 0.9655370062571179 1.0 20.129242179673046 2.4562173388259225 5.089516624315497 0.9748421819196007 0.8844052582529751 0.6503760800528429 0.03231022424070611 0.1180030148274163 8.466844457757537 0.01148106417177779 0.009818615836580067 285.90209571352153 -2.4562173388259225 -0.09043692366662559 TAPDLLPHKPLPASAYIEDGRFDLSMPHVQDPSLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAPDLLPHKPLPASAYIEDGRFDLSMPHVQDPSLVR 36 2 P10586-2;P10586;H0Y6Z7;H0Y7Z9;H0Y380;H0Y4H1 P10586-2 PTPRF Receptor-type tyrosine-protein phosphatase F 0 118.74 1.0142e-06 425570000.0 76563.0 104450.0 86391.0 107760.0 89620.0 93906.0 114620.0 77815.0 145010.0 89766.0 False True 76150.793314949 107926.55510864154 98554.10187596678 121402.40495111817 101032.57578064315 87414.49925094658 109075.39270907917 83621.95043656367 109274.22853444834 84037.05702746095 0.9061573073657858 1.2842733780333855 1.1727457548134042 1.4446294199884615 1.2022383857115384 1.0401899155319299 1.2979439852758812 0.9950604339849546 1.3003100346403205 1.0 16.35873801935395 2.9748610955959767 24.061540735742728 1.1288754080540622 1.220456505462804 0.04761146695740315 0.15991899204284832 1334.4059437473982 1277218.7217477812 0.04670805524031835 0.049759856673300136 943.7589768832148 -2.9748610955959767 0.09158109740874187 TAPFDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TAPFDSR 7 0 P14854;A0A494C160;K7EQD3 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 ; 110.61 0.015737 398720000.0 599280.0 768280.0 756580.0 653540.0 739450.0 973320.0 805190.0 715200.0 990080.0 758140.0 False True 596053.543066267 793851.7353649327 863099.8876887518 736278.096991034 833614.5744364711 906036.6793488316 766239.8835754968 768571.8557120133 746088.0503922942 709754.8561236903 0.8398019934961766 1.118487219235858 1.2160535151567005 1.0373695799873772 1.1745105612791968 1.2765487569850948 1.0795838548541932 1.082869457082056 1.0511911879927625 1.0 19.436961289301024 4.7380937993968 8.005319474214138 1.121928037149581 0.8375483691017813 0.5073945360694933 0.08116178380018517 0.0726069232204136 58.16025847176661 0.019216178429109682 0.11291679301092937 54713.4120758892 -4.7380937993968 -0.2843796680477997 TAPPALPTGYDS(ph)EEEEESRPMSYDEK ddPTM_BT-474_Trastuzumab_2h_R1 7 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2;A0A0G2JHN8;A0A140T9I1 H0Y6K2 BRD2 Bromodomain-containing protein 2 1 TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPT(0.001)GYDS(0.999)EEEEESRPMSYDEK 326.41 1.3965e-84 3819990000.0 1227810.0 990131.0 967766.0 862563.0 956895.0 1214530.0 1187890.0 1178620.0 1538860.0 1267770.0 True False 1221199.6073825152 1023086.9117881721 1104019.0408271335 971763.3873594236 1078749.9062889817 1130572.3997960973 1130427.2225195246 1266574.6093110905 1159628.5726675477 1186859.8332074948 1.0289333021593772 0.8620115730290362 0.9302017053214416 0.818768451143239 0.9089109565479645 0.952574489559327 0.9524521690691471 1.0671644400402078 0.9770560433692036 1.0 20.17871813372537 2.1940321673447327 1.9637581907822121 1.0195464598330901 0.9054620092272753 0.36744707647397656 0.056376771423310414 0.3068538045089704 2.357696160136411 0.02764950835558613 0.01721215731033774 156.32634262241828 -2.1940321673447327 -0.11408445060581485 TAPPALPTGYDS(ph)EEEEESRPMSYDEKR ddPTM_BT-474_Trastuzumab_2h_R1 3 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2;A0A0G2JHN8;A0A140T9I1 H0Y6K2 BRD2 Bromodomain-containing protein 2 1 TAPPALPT(0.001)GY(0.002)DS(0.997)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR 303.33 2.335799999999999e-71 2131110000.0 1107920.0 1232290.0 1131660.0 1184300.0 1290900.0 1386210.0 1455980.0 1333090.0 2194810.0 1599060.0 True False 1101955.0818214843 1273306.0277149652 1290987.8914349475 1334232.2585709868 1455288.463236243 1290384.5654873473 1385548.6850162703 1432571.945093857 1653928.4844472297 1497006.621775858 0.7361056830291539 0.8505680664287757 0.8623795463933779 0.8912667714109531 0.9721322818932318 0.8619765248309986 0.9255461297643638 0.9569576541982399 1.1048237598877282 1.0 20.51364917227165 7.182448826849075 0.21568676212302543 1.0323569413115021 2.2681995168852444e-16 0.6966154069722785 0.052450362271829774 21.06332745006416 0.36168188531307505 0.08639189500094015 7.002145201876262 15221197.701273654 -7.182448826849075 -1.032356941311502 TAPPAS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TAPPASPEAR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR 165.3 6.1846e-06 7037160000.0 3293220.0 3709840.0 3277130.0 3444630.0 3251310.0 3690900.0 3515260.0 3136930.0 3573270.0 3277120.0 True False 3275489.669431137 3833319.7817543587 3738521.418675409 3880719.8048141333 3665345.056475815 3435756.770444052 3345213.4442027304 3371023.64560778 2692685.487864895 3067971.3959164144 1.0676402243485508 1.249463990067395 1.21856462666227 1.2649139460620518 1.194712917256832 1.119879010285811 1.0903665688198187 1.098779359577713 0.8776762037119905 1.0 21.548853601329977 1.792077150278419 1.03525960727886 0.9538765270051753 1.2029485233076906 0.6502211980577918 0.06748847284738037 0.3063321947634409 0.6084644485657956 0.0564679581450302 0.02336548692486715 61.95511255114128 -1.792077150278419 0.2490719963025153 TAPS(ph)PLVEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 TAPSPLVEAK 10 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6;A0A0A0MS48;Q8TEH3-4;Q8TEH3-3;Q8TEH3-5;Q8TEH3-2 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 TAPS(1)PLVEAK;TAPS(1)PLVEAK;T(0.001)APS(0.999)PLVEAK;T(0.002)APS(0.998)PLVEAK 155.48 1.3257e-05 1299360000.0 2353720.0 1914160.0 1838980.0 1725080.0 1748350.0 2364280.0 2215270.0 1936050.0 2995190.0 1976270.0 True False 2341047.8330428763 1977871.658465846 2097892.3992992933 1943474.951123563 1970992.0092176688 2200842.888516474 2108108.9269467928 2080527.8820626976 2257065.557989755 1850142.7566301282 1.2653336206914587 1.0690373223244485 1.1339083926261015 1.0504459421625558 1.0653188799374902 1.1895530118579147 1.1394304138922378 1.1245228913320156 1.2199412990707814 1.0 20.819205162409784 2.7412549771824217 24.963599658970058 1.1411553146190234 1.1114180109133571 0.007290391049653677 0.07783873314411976 1011.3517669785132 9370370.501305137 0.02310472951166774 0.023431949753949383 551.1311742206535 -2.7412549771824217 -0.029737303705666296 TAPSS(ph)PLTS(ph)PSDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TAPSSPLTSPSDTR 14 0 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 2 TAPS(0.069)S(0.931)PLT(0.031)S(0.969)PSDTR 184.76 1.1363e-07 0.0 163880.0 190810.0 199900.0 175560.0 200200.0 215340.0 181640.0 170790.0 171110.0 195090.0 True False 162997.68828877973 197160.9955029194 228044.18243805214 197785.87799942784 225694.2833216333 200454.05265583502 172853.37926781626 183535.21705404733 128942.2332565303 182639.18917504777 0.8924573582757043 1.0795109001165868 1.2486048775626497 1.0829323043580914 1.2357385309311684 1.097541297468819 0.9464199882214083 1.0049060000925694 0.7059943369160907 1.0 17.478636834295298 1.9312834178798184 1.6237787948742033 0.8810468098472858 1.1158838602693606 0.3765781264473712 0.1203521551320619 0.38812591016865994 1.9068245009443714 0.08027196800859353 0.03702906479946537 85.36570235481993 -1.9312834178798184 0.2348370504220748 TAPTALGITLSSS(ph)PTSTPELR ddPTM_BT-474_Trastuzumab_2h_R1 2 TAPTALGITLSSSPTSTPELR 21 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 TAPTALGITLS(0.009)S(0.053)S(0.853)PT(0.038)S(0.038)T(0.009)PELR;TAPTALGITLSS(0.002)S(0.804)PT(0.09)S(0.09)T(0.013)PELR 178.76 6.283e-17 153375000.0 132967.0 141879.0 118245.0 126334.0 135822.0 158319.0 154058.0 139617.0 194334.0 164084.0 True False 132251.12044602245 146601.35674733346 134892.86819603533 142327.87144668322 153118.1266199344 147374.7801728389 146605.62598128847 150035.92950076057 146442.98964218685 153612.01864062008 0.8609425331192861 0.954361241032264 0.8781400660557768 0.926541247919302 0.9967848087340018 0.9593961558283184 0.954389033349511 0.9767199912382776 0.9533302858599535 1.0 17.228931571712614 7.999999999548103 0.25592727145007715 0.9871285485491343 0.2622452348925884 0.5775672800441465 0.028353421736472692 36.97090732641376 0.5085416192902757 0.03463085856920001 11.630484274818386 99999999.89594683 -7.999999999548103 -0.724883313656546 TAPTLS(ph)PEHWK ddPTM_BT-474_Trastuzumab_2h_R1 4 TAPTLSPEHWK 11 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 TAPTLS(1)PEHWK;TAPTLS(1)PEHWK;TAPTLS(1)PEHWK;TAPTLS(1)PEHWK 251.91 1.4559999999999998e-20 5552680000.0 3403170.0 2954470.0 2684580.0 2468400.0 2572940.0 3316780.0 3292220.0 2805400.0 4327420.0 3339750.0 True False 3384847.7108477294 3052807.7479351717 3062545.5292123384 2780899.186909243 2900588.657989822 3087498.8054602994 3132962.7410982735 3014753.1935325484 3260985.325457162 3126604.295696173 1.082595490419761 0.9763972217838428 0.9795117128918385 0.8894311284409098 0.9277121067039198 0.9874926640733838 1.002033658500007 0.9642260127648422 1.0429798647516628 1.0 21.57616521207267 -0.4405230718020037 8.833120547535497 0.9999999865512174 0.9786472204040699 0.0008179302434573321 0.05131936990277948 0.0 0.0 0.049769581059475015 0.011730802667254825 0.36264102050604485 0.4405230718020037 -0.02135276614714743 TAQEHDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 TAQEHDKR 8 1 A0A087WY55;Q9NP79 A0A087WY55 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog 0 ;; 121.73 0.0009222 95984000.0 117127.0 106743.0 103164.0 91926.0 90877.0 65831.0 101425.0 108057.0 141821.0 114488.0 False True 116496.40124603294 110295.87622749395 117688.5944824372 103563.82217461495 102449.6472798203 61280.25791950525 96518.68526887402 116120.76204232806 106871.11485403773 107181.27782189182 1.0869099866454335 1.0290591647057783 1.0980331348354129 0.9662491834321273 0.9558539454070113 0.5717440504986099 0.9005181430031434 1.0834052775083667 0.9971061833357734 1.0 16.709693395601615 3.5304322024788415 3.0391477711437207 0.9173307608615094 1.0667802896360765 0.22014956876339842 0.12848335295086727 0.4627911578743852 8.46140832636163 0.04038377669380409 0.06378557796715686 3391.815359274047 -3.5304322024788415 0.14944952877456708 TAQVPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 TAQVPSPPR 9 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR 124.6 0.00055084 38601900000.0 4264570.0 4388320.0 4084380.0 4031150.0 4035810.0 4670150.0 4253020.0 3926300.0 5191580.0 4400510.0 True False 4241610.028958266 4534382.578404541 4659425.201932627 4541493.176676875 4549746.481380022 4347313.522850597 4047285.174485847 4219300.443347423 3912184.6726079015 4119665.6843338413 1.0296005438228037 1.1006676089391851 1.1310202232310669 1.1023936223628894 1.1043970142241593 1.0552588136902588 0.9824304894148956 1.024185156429676 0.9496364444049566 1.0 21.974095835100783 2.4278041642664347 3.1384788281042173 0.9940672489762569 1.096209221745762 0.7284320159685556 0.029955502703562707 0.13411950123112823 2.718060186430792 0.011171615165093464 0.009314955309517139 267.7960483969088 -2.4278041642664347 0.1021419727695051 TAQVPS(ph)PPRGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TAQVPSPPRGK 11 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 TAQVPS(1)PPRGK;TAQVPS(1)PPRGK;TAQVPS(1)PPRGK 70.529 0.039997000000000005 1356160000.0 660980.0 979240.0 984880.0 1234340.0 1085370.0 1093440.0 1309850.0 1021580.0 1860290.0 1313100.0 True False 657421.3571217816 1011833.4114369188 1123542.5432695781 1390607.3174402674 1223585.436007997 1017853.0664808956 1246487.5513870802 1097815.48707813 1401846.4561088816 1229296.8337985296 0.5347946395423051 0.8230993390834267 0.9139717213765446 1.1312217514977958 0.9953539310982488 0.8279961669922533 1.013984187639556 0.8930434512597564 1.140364489329378 1.0 20.22940188938145 4.683768791825334 1.7523953687448632 0.9841226864131063 0.4162530632647958 0.7050643595786308 0.09096252333149578 0.4405541418899504 1.4799461942538643 0.023740203570690118 0.4022609183777123 48280.17013304645 -4.683768791825334 -0.5678696231483105 TAS(ph)EGDGGAAAGAAAAGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TASEGDGGAAAGAAAAGAR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 T(0.006)AS(0.994)EGDGGAAAGAAAAGAR;TAS(1)EGDGGAAAGAAAAGAR 420.07 5.623099999999998e-169 991830000.0 491250.0 467050.0 408040.0 408010.0 481580.0 493350.0 472110.0 497840.0 669940.0 531240.0 True False 488605.16458300565 482595.47691231273 465488.48525274056 459664.02416579233 542906.358451708 459245.87572098215 449272.2356646595 534991.3487802971 504842.26373607543 497335.8083825539 0.9824451735579984 0.9703614113003848 0.9359641461703956 0.9242528215708445 1.0916293363579823 0.9234120446998404 0.9033579084638853 1.0757145167572135 1.0150933337736814 1.0 18.923860783952907 1.725743961326332 17.540549435418285 1.033890145757122 0.9630732748106084 0.2628898217444644 0.05252375452228769 0.2374594490840938 303.37174628500554 0.02440068491846849 0.013500484533202687 53.17946468534946 -1.725743961326332 -0.07081687094651345 TAS(ph)ETRS(ph)EGSEYEEIPKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASETRSEGSEYEEIPKR 18 2 P48634 P48634 PRRC2A Protein PRRC2A 2 T(0.029)AS(0.902)ET(0.083)RS(0.98)EGS(0.006)EYEEIPKR 100.76 0.004762399999999999 0.0 340010.0 283940.0 264770.0 270530.0 290420.0 385560.0 404630.0 335530.0 529580.0 406140.0 True False 338179.4239386623 293390.77125464525 302047.31457790453 304779.07026193384 327403.2655457974 358907.1447106147 385056.5010632933 360568.9523868175 399072.1050084352 380219.79748605203 0.8894313925120325 0.7716346523629085 0.7944018606474189 0.8015865356751034 0.8610894743265121 0.9439464938008149 1.0127208094087177 0.9483171438489985 1.0495826562610138 1.0 18.536474127389486 2.7422572125165727 1.9464729494700015 0.9944804664870514 0.8095961556625577 0.8388058540983336 0.03761119800138132 0.12437910511151393 0.9317656693715474 0.013557768914661072 0.013389019696791718 552.4045060340749 -2.7422572125165727 -0.18488431082449364 TAS(ph)FGNILDVPEIVISGNGQPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TASFGNILDVPEIVISGNGQPR 22 0 O43318;O43318-3 O43318 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 T(0.106)AS(0.894)FGNILDVPEIVISGNGQPR;T(0.153)AS(0.847)FGNILDVPEIVISGNGQPR;T(0.14)AS(0.86)FGNILDVPEIVISGNGQPR 185.41 4.5948999999999995e-17 214772000.0 627470.0 305876.0 291845.0 382933.0 261047.0 286731.0 230141.0 321401.0 508550.0 426600.0 True False 624091.7712384707 316056.89775405376 332934.23923778505 431412.2785369944 294289.78810320824 266909.9608621728 219008.200606004 345385.57466120913 383224.66672087257 399374.02276936534 1.5626749254016397 0.7913807101484254 0.8336401975499828 1.0802211810008757 0.7368776418218812 0.6683207861426449 0.5483786829382218 0.8648173265407049 0.959563328790118 1.0 18.60738097036182 4.739734111105689 24.693430991276355 0.8162726552568159 1.562675211958799 0.6783380258338647 0.1507299308177929 49.555359821290956 1042627.5353712932 0.037295302247957296 0.23000786247849295 54920.453042739195 -4.739734111105689 0.7464025567019831 TAS(ph)FSESR ddPTM_BT-474_Trastuzumab_2h_R1 10 TASFSESR 8 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 1 TAS(0.992)FS(0.008)ESR;TAS(0.982)FS(0.018)ESR;TAS(0.899)FS(0.101)ESR;TAS(0.989)FS(0.011)ESR;T(0.001)AS(0.97)FS(0.029)ESR;T(0.002)AS(0.997)FS(0.001)ESR;T(0.005)AS(0.894)FS(0.101)ESR;T(0.011)AS(0.984)FS(0.006)ESR;TAS(1)FSESR;TAS(0.999)FS(0.001)ESR 204.48 9.1438e-05 37508480000.0 19079280.0 18009150.0 16784360.0 16791960.0 17553300.0 20596160.0 19355190.0 18415170.0 24000970.0 19250460.0 True False 18976559.276387304 18608573.670988914 19147451.99572758 18917820.414281532 19788608.708439656 19172395.93734563 18418905.51569393 19789403.495738536 18086252.540020943 18021879.161652014 1.052973394515191 1.0325545690365798 1.062455908397756 1.0497140861168326 1.0980324821257814 1.0638400005556443 1.0220302417123477 1.0980765833702604 1.003571957052398 1.0 24.103246114644286 1.1679553813317636 10.53045213517237 1.001266787050363 1.0601653363210162 0.5066219584151552 0.022963771098590248 0.39931918396434707 56.609964216184444 0.021633037701179702 0.005413901738093455 14.721612473480572 -1.1679553813317636 0.05889854927065308 TAS(ph)FSESRADEVAPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TASFSESRADEVAPAK 16 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 1 T(0.004)AS(0.991)FS(0.005)ESRADEVAPAK;T(0.001)AS(0.993)FS(0.006)ESRADEVAPAK 206.21 1.248e-11 893830000.0 461640.0 500950.0 574350.0 592930.0 612570.0 708470.0 778710.0 657530.0 1246490.0 788980.0 True False 459154.58153302554 517623.8179193302 655213.4876603058 667994.8772055169 690577.1585131506 659495.1364589919 741040.822338919 706598.2274696867 939309.2416102648 738626.6209202388 0.6216328636530523 0.7007922585763752 0.8870699607928965 0.9043742241151242 0.9349475620751059 0.8928667310113212 1.0032685004172641 0.9566379107611249 1.2716969778857954 1.0 19.494485734242062 5.455836097268343 0.3490536983079523 1.067890517141697 7.019711104114884e-19 0.7217720683127677 0.08789332614142566 5.730356442317442 0.3812435974986822 0.07845439298052947 2.8419296680526163 285651.2292220913 -5.455836097268343 -1.067890517141697 TAS(ph)FSESRADEVAPAKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TASFSESRADEVAPAKK 17 2 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 1 T(0.018)AS(0.977)FS(0.005)ESRADEVAPAKK;T(0.032)AS(0.927)FS(0.041)ESRADEVAPAKK 207.67 3.0641e-12 2383700000.0 1675030.0 1945560.0 1896090.0 2355220.0 2112930.0 2503790.0 2923920.0 2325540.0 5308600.0 3052500.0 True False 1666011.8245933296 2010316.7884841461 2163042.990890276 2653390.6105138515 2381999.1111827074 2330708.890587692 2782478.8191409055 2499083.6036528414 4000366.6615955606 2857686.836623272 0.5829931409006099 0.7034769390125324 0.7569209345017638 0.9285099320572079 0.8335409886960702 0.8155928286885792 0.9736822046004052 0.8745127603295514 1.3998618079238219 1.0 21.446416394783377 4.31700404348136 0.2865881659986969 1.1114558596149309 0.308580126899036 0.5616858544790929 0.13826723382671266 5.001603317429692 0.4100876440007992 0.1687744289650929 1.3918469086221374 20749.328359439474 -4.31700404348136 -0.8028757327158949 TAS(ph)GS(ph)SVTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 TAS(1)GS(0.865)S(0.134)VT(0.001)SLDGTR 170.74 4.5695999999999986e-06 229590000.0 532590.0 401820.0 393350.0 358280.0 361010.0 788550.0 713150.0 469490.0 748420.0 678300.0 True False 529722.5946163121 415194.33579468034 448730.2609405093 403638.21126472444 406982.4836260872 734039.3945470352 678652.2100024401 504525.7278219143 563981.9193141974 635010.313278154 0.8341952619347102 0.6538387284630013 0.7066503512738253 0.635640402721961 0.640906887834775 1.1559487762610612 1.068726280206365 0.7945158011959982 0.8881460781364601 1.0 19.276420497493934 2.759349726488254 24.946375640422517 0.9617438843532067 0.6894346700099245 0.646232037821652 0.1057232503897374 568.922566158512 682690.8791606167 0.03504336494584983 0.03713236908736223 574.5789700385611 -2.759349726488254 -0.27230921434328215 TAS(ph)GSS(ph)VTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 3 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 T(0.117)AS(0.862)GS(0.142)S(0.345)VT(0.158)S(0.376)LDGTR;T(0.001)AS(0.998)GS(0.054)S(0.798)VT(0.134)S(0.014)LDGTR;T(0.006)AS(0.994)GS(0.251)S(0.433)VT(0.091)S(0.226)LDGTR 122.33 0.0001599 1874640000.0 1628850.0 1341000.0 1374830.0 1188660.0 1216000.0 2750620.0 2519840.0 1647470.0 2449980.0 2453780.0 True False 1620080.4525822485 1385634.3743483801 1568394.113763417 1339144.2341239455 1370850.3922033268 2560476.113663012 2397945.712476408 1770412.57708315 1846215.2570500507 2297177.6596132494 0.7052482187446502 0.6031899050340165 0.6827482877521411 0.582951966522869 0.5967541894143799 1.1146182372738604 1.043866025094517 0.7706903162993561 0.8036884954561493 1.0 21.131431005809937 2.7583442499172293 24.97706473535606 0.9272841182943906 0.6323093032915665 0.6951222045609751 0.10304512014989481 526.7806495246609 665065.7808777189 0.03439403039477395 0.03643638035690631 573.2502461921486 -2.7583442499172293 -0.2949748150028241 TAS(ph)GSSVT(ph)SLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 TAS(0.999)GS(0.006)S(0.024)VT(0.555)S(0.415)LDGTR 156.25 2.9827e-05 524620000.0 686020.0 577530.0 585560.0 515000.0 493200.0 1225100.0 1188800.0 689390.0 1087800.0 1084000.0 True False 682326.5445439867 596752.7369257425 668001.7582212402 580198.9471958602 556006.0965745728 1140411.7205751995 1131293.2023429885 740835.782451489 819726.2657732078 1014818.1919409081 0.6723633355832843 0.5880390612474267 0.6582477172030607 0.5717269869652126 0.5478873959789524 1.1237596346140437 1.1147742633380606 0.7300182321668778 0.807756770900437 1.0 19.95278985626248 2.7531004132971337 24.987597387445977 0.9347852078153481 0.6073781662614296 0.6780746340224496 0.11934030591826855 548.780861982777 943115.280491247 0.04036380845281807 0.04263962061130405 566.3702244517192 -2.7531004132971337 -0.32740704155391853 TAS(ph)GSSVTS(ph)LDGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 TAS(1)GSSVT(0.006)S(0.994)LDGTR 284.34 2.2903e-33 1210700000.0 1092700.0 982480.0 1055800.0 912610.0 904510.0 2156100.0 2070500.0 1193400.0 1867000.0 1845100.0 True False 1086817.0246103827 1015181.2528782971 1204447.4628218892 1028146.332427989 1019693.9870492032 2007053.8819134673 1970342.0049219013 1282457.5679624095 1406902.8665182737 1727344.1383304154 0.6291838438522497 0.5877122168947367 0.6972828610667368 0.5952180052677608 0.5903247444570023 1.1619305252359318 1.1406771593449574 0.7424447390095548 0.8144890385757942 1.0 20.720124108590507 2.7596894773014675 24.774221233845147 0.9525417802195183 0.6210765283473395 0.6675580719180345 0.12381068581496094 510.36000801928435 598411.4902847395 0.0419633566775384 0.04446770170246867 575.028641997821 -2.7596894773014675 -0.3314652518721788 TAS(ph)GSSVTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 5 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 T(0.012)AS(0.977)GS(0.008)S(0.001)VT(0.001)SLDGTR;TAS(1)GSSVTSLDGTR;TAS(0.872)GS(0.128)SVTSLDGTR;TAS(0.964)GS(0.034)S(0.003)VTSLDGTR;TAS(0.999)GS(0.001)SVTSLDGTR 359.48 2.3153999999999993e-82 34413400000.0 2412140.0 1979520.0 1914037.0 1749540.0 1649560.0 3945520.0 3520050.0 1996840.0 3234820.0 2909190.0 True False 2399153.3062539496 2045407.126554891 2183516.772492153 1971031.5846156233 1859621.6882918722 3672775.4891550574 3349771.7336031585 2145854.340548062 2437641.9553672476 2723523.00351713 0.8809006948557833 0.7510151828765438 0.8017251073966997 0.723706604302682 0.6828000666380918 1.3485384497990553 1.2299406795085988 0.787896536132402 0.8950326295093897 1.0 21.3770426218963 2.7845925075921016 24.999889442895714 1.033271491226058 0.766493839045278 0.45280977672316314 0.15553237943468015 463.3528192192159 251645.7860759083 0.052320448823103625 0.05549407824972649 608.9652455654838 -2.7845925075921016 -0.2667776521807801 TAS(ph)LNQRPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASLNQRPR 9 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 1 T(0.15)AS(0.85)LNQRPR 51.841 0.092089 844300000.0 90178.0 147740.0 144310.0 161300.0 156780.0 123300.0 119270.0 134060.0 90679.0 134230.0 True False 89692.49166771777 152657.43658928413 164627.59363499412 181720.56346153826 176745.0036921359 114776.56121698002 113500.45444435415 144064.2379428865 68332.37548634745 125663.32647991518 0.7137523267940337 1.2148129519210478 1.3100687228847678 1.446090665844205 1.4064962996215538 0.913365612960475 0.9032106472407841 1.1464302432413513 0.5437734094781347 1.0 16.939204150247484 2.7187004829963626 24.23577610030113 0.9300683645334641 1.235813067244472 0.30704784872920254 0.2353250508948178 739.8617892946534 902868.7040185083 0.07771004463457407 0.07336736765342955 523.2394530277469 -2.7187004829963626 0.30574470271100795 TAS(ph)LPGYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASLPGYGR 9 0 O14639-3;F8W8M4;O14639-5;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 T(0.005)AS(0.995)LPGYGR 78.61 0.030717 182750000.0 113700.0 107870.0 97119.0 103910.0 104760.0 127570.0 119020.0 101790.0 126820.0 117880.0 True False 113087.85183325765 111460.38774120812 110792.51102651923 117064.99534586757 118100.56503883256 118751.38616747865 113262.54789944684 109386.0866791468 95566.91030093598 110356.79747785466 1.0247474955582236 1.0100002019683012 1.003948225742524 1.060786449238517 1.0701702816496812 1.076067708392032 1.0263305069375113 0.991203887563857 0.8659811854372942 1.0 16.751815970257887 1.5303514509317078 3.567984656235945 0.9311997895231722 1.0394706913564682 0.5440243847866959 0.03831448867057548 0.13935214310585983 3.883089900359527 0.025158116810053772 0.009927127481599348 33.91184752883095 -1.5303514509317078 0.10827090183329602 TAS(ph)LTSAASVDGNR ddPTM_BT-474_Trastuzumab_2h_R1 6 TASLTSAASVDGNR 14 0 Q9UN36;Q9UN36-5;G3V578;H0YJT9;A0A0A0MS87;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36-4 Q9UN36 NDRG2 Protein NDRG2 1 TAS(1)LTSAASVDGNR;TAS(1)LTSAASVDGNR;TAS(0.994)LT(0.006)SAASVDGNR;TAS(0.899)LT(0.094)S(0.006)AASVDGNR;TAS(1)LTSAASVDGNR;T(0.002)AS(0.997)LT(0.001)SAASVDGNR 314.16 8.414999999999997e-56 3275910000.0 2048557.0 1793380.0 1915297.0 1768559.0 1671809.0 2402730.0 2611080.0 2071587.0 2643690.0 2358120.0 True False 2037527.7967280792 1853071.5691788988 2184954.1695400374 1992458.388065559 1884703.9665617202 2236634.9305180414 2484772.085105757 2226179.34124564 1992188.0231310646 2207622.762711896 0.9229510725940929 0.8393968392056901 0.9897316726595027 0.9025357147604222 0.8537255542004402 1.0131418140346162 1.1255419753207312 1.0084056836372481 0.9024132459495995 1.0 21.07406223561521 2.6950507727428397 10.622362899541724 1.0199513901971833 0.9031673529991284 0.4187284471474356 0.06319649851088849 0.7620665732925773 184.15816715624445 0.020846258377921877 0.019682828380795634 495.50811655948417 -2.6950507727428397 -0.11678403719805486 TAS(ph)NPKVENEDEPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TASNPKVENEDEPVR 15 1 Q9UBF8-2 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 T(0.059)AS(0.941)NPKVENEDEPVR;T(0.069)AS(0.931)NPKVENEDEPVR 172.66 6.1405e-07 1355180000.0 793760.0 594740.0 541020.0 449330.0 535570.0 779540.0 695780.0 613740.0 1090490.0 695620.0 True False 789486.4843550264 614535.5613720772 617190.9133698604 506215.1319291571 603771.6649279069 725652.2346397782 662122.4632622838 659540.3953085728 821753.3513173609 651224.9360497561 1.2123099725633149 0.9436609800290637 0.9477384528818236 0.7773276235394038 0.9271322879469351 1.114288158315141 1.0167338911784163 1.012768950939221 1.2618579323789525 1.0 19.31279641732499 2.744767669090975 24.519349604427646 1.0707761119689165 0.9496241636170127 0.1878162526588324 0.12203898902670467 682.3578822862178 2695478.091742752 0.03829564641594163 0.03970885589906957 555.6069493219711 -2.744767669090975 -0.1211519483519038 TAS(ph)PLPLRPDAPVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TASPLPLRPDAPVEK 15 1 Q9HCK8-2;Q9HCK8;H0YJG4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 T(0.003)AS(0.997)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK;T(0.001)AS(0.999)PLPLRPDAPVEK 209.23 1.5075e-09 9694200000.0 12537600.0 10876600.0 9872100.0 9499700.0 10172200.0 12747900.0 12333400.0 12578800.0 17685700.0 13397600.0 True False 12470098.954658307 11238621.055956459 11262005.870168567 10702361.045973802 11467569.374646928 11866667.67832879 11736786.32383663 13517493.929852167 13327296.2112385 12542553.697737565 0.9942232861963088 0.896039301628319 0.8979037396666689 0.8532840523460786 0.9142930260458407 0.9461125672094438 0.9357573112047923 1.077730600610501 1.062566406523935 1.0 23.580327778857008 1.8309021638762797 4.441123071552413 1.0527582170174319 0.9142712441446065 0.6874284547812305 0.03925835681967177 0.11857381247086314 3.715919851677531 0.01937228207852429 0.010793867791059505 67.74888684359999 -1.8309021638762797 -0.1384869728728254 TAS(ph)PPALPK ddPTM_BT-474_Trastuzumab_2h_R1 4 TASPPALPK 9 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 TAS(1)PPALPK;TAS(1)PPALPK;TAS(1)PPALPK;TAS(1)PPALPK 134.59 0.00025657 1442320000.0 2176400.0 2388330.0 2225820.0 2037190.0 1933840.0 2670730.0 2669590.0 2392680.0 3200830.0 2393740.0 True False 2164682.504220774 2467824.1202740245 2539196.108825739 2295098.045122204 2180103.0612323037 2486108.721322181 2540451.732875854 2571233.931382856 2412028.3354245825 2240969.463816078 0.9659580548387317 1.1012305879758142 1.1330792988592626 1.0241540914234288 0.9728392539182008 1.1093898250129046 1.1336396028127027 1.1473757107802713 1.0763325312417305 1.0 21.09569155967125 2.5773758190241294 24.979553276787836 1.1094167545111708 1.0466233596467949 0.13068338266409607 0.06164955945038146 67.94450771481257 16916.371431028354 0.020172649661564217 0.01901894220232329 377.899066426728 -2.5773758190241294 -0.06279339486437596 TAS(ph)PPGPPPYGK ddPTM_BT-474_Trastuzumab_2h_R1 4 TASPPGPPPYGK 12 0 P54259 P54259 ATN1 Atrophin-1 1 TAS(1)PPGPPPYGK;TAS(1)PPGPPPYGK;TAS(1)PPGPPPYGK;TAS(1)PPGPPPYGK 196.02 2.2178e-07 1738640000.0 1708910.0 1516400.0 1353690.0 1273080.0 1339530.0 1704750.0 1713880.0 1625490.0 2098570.0 1669450.0 True False 1699709.4184377515 1566872.4573168429 1544277.7855155903 1434251.7974681682 1510111.2054836533 1586904.645049849 1630973.0767425983 1746792.317870971 1581405.5428972996 1562904.2717119453 1.0875326462419577 1.0025389818664652 0.9880821323906471 0.9176837144972059 0.9662211773402702 1.0153562657497983 1.0435527666426383 1.1176579074530277 1.0118377507312644 1.0 20.57579798492605 2.3157735376693336 3.1571612373828057 1.0606742394304818 0.9889588072317997 0.152926248040811 0.05005613731895866 0.3274754791955519 6.603048634585925 0.02003680667534827 0.015673127689323742 206.9062157492332 -2.3157735376693336 -0.07171543219868204 TAS(ph)PPPPPK ddPTM_BT-474_Trastuzumab_2h_R1 7 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 TAS(1)PPPPPK;TAS(1)PPPPPK;TAS(1)PPPPPK;TAS(1)PPPPPK;TAS(1)PPPPPK;T(0.001)AS(0.999)PPPPPK;T(0.056)AS(0.944)PPPPPK 143.96 0.00010563 13739110000.0 4838300.0 4383420.0 3876360.0 3767690.0 3736590.0 5101420.0 4966940.0 4441440.0 6242590.0 4657430.0 True False 4812251.130385663 4529319.48486665 4422117.794074872 4244679.167690037 4212422.587995905 4748770.842850974 4726670.136646594 4772882.805975339 4704187.340920369 4360188.829973572 1.103679523534496 1.0387897546387006 1.0142032757103492 0.9735081055459162 0.966110127854586 1.0891204551064724 1.0840517053192036 1.0946504823746976 1.0788953241157866 1.0 22.055959185557413 2.710188430155192 24.589133697452493 1.0779365440503217 1.0175207402936628 0.2367065894573167 0.04357032647603953 745.4208067365023 646027.7410740904 0.01450927603283576 0.013682132557044289 513.0839507561612 -2.710188430155192 -0.06041580375665889 TAS(ph)PPPPPKR ddPTM_BT-474_Trastuzumab_2h_R1 6 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.007)AS(0.993)PPPPPKR;T(0.138)AS(0.862)PPPPPKR;T(0.021)AS(0.979)PPPPPKR;T(0.005)AS(0.995)PPPPPKR;T(0.012)AS(0.988)PPPPPKR;T(0.002)AS(0.998)PPPPPKR 121.02 0.00032222 9126430000.0 2316191.0 2251977.0 2030213.0 1954491.0 1995148.0 2490435.0 2520530.0 2308975.0 3117312.0 2339066.0 True False 2303720.8850090127 2326932.693096157 2316049.3434722633 2201929.3602015204 2249218.2716313177 2318277.090303404 2398602.3345403513 2481282.4392374787 2349092.227440715 2189784.8053048453 1.0520307198351877 1.0626307605473677 1.057660706139497 1.0055460038206743 1.0271412360623255 1.0586780421013429 1.095359840259023 1.133117022835517 1.0727502637473512 1.0 21.062357669482214 2.384396924567757 4.061308576116829 1.091522541957693 1.041260515244203 0.10754963344243929 0.0357969630057742 0.2803084848870794 8.693464690790158 0.012833191108029413 0.010595940817272607 242.3242763972801 -2.384396924567757 -0.050262026713490116 TAS(ph)PWK ddPTM_BT-474_Trastuzumab_2h_R1 8 TASPWK 6 0 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3;A0A1B0GTD1 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 T(0.007)AS(0.993)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK 134.81 0.014551 7030760000.0 11217400.0 8207850.0 7585300.0 6899250.0 6652140.0 10386780.0 10872280.0 9296130.0 16374260.0 11211780.0 True False 11157006.764770312 8481043.325499905 8653244.307390468 7772694.3426039545 7499250.598677168 9668766.346450143 10346346.280257069 9989854.425391663 12339043.026842806 10496234.601512207 1.0629532578438088 0.8080081712615331 0.8244141481121033 0.7405221622508449 0.7144705585750475 0.9211652286294316 0.9857198007718364 0.9517560158147009 1.1755685248370025 1.0 23.323368535341125 2.084092536366052 1.4886751825819755 1.0506969756987445 0.8262430170952016 0.4470733232904093 0.10346051941759653 0.38415430868558387 1.6093166170368265 0.06727719217881045 0.03460114672167891 121.36474182399448 -2.084092536366052 -0.2244539586035429 TAS(ph)QGPQTDSVIQNSENIK ddPTM_BT-474_Trastuzumab_2h_R1 4 TASQGPQTDSVIQNSENIK 19 0 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 T(0.005)AS(0.995)QGPQTDSVIQNSENIK;T(0.053)AS(0.947)QGPQTDSVIQNSENIK;T(0.059)AS(0.941)QGPQTDSVIQNSENIK;T(0.007)AS(0.993)QGPQTDSVIQNSENIK 474.43 1.7108999999999984e-215 1450020000.0 2140850.0 1514440.0 1610360.0 1393740.0 1631900.0 2466550.0 1998750.0 1963810.0 3051670.0 2053900.0 True False 2129323.9014707976 1564847.2199016882 1837084.690499959 1570187.341096619 1839712.7919708935 2296043.204134161 1902062.8265335173 2110359.4742251216 2299626.818782979 1922818.3435677418 1.107397330899127 0.8138299830228127 0.95541250511023 0.8166072194751248 0.9567793016564176 1.1941030268485529 0.9892056797233829 1.0975345025622139 1.1959667570656096 1.0 20.874791041199483 2.9237973357819005 6.994301796471714 1.0913835357310633 0.9139946083404795 0.4099848196855651 0.09949573747112492 0.23752810398086396 18.722232127211306 0.028562199995330037 0.030446439643712915 839.0683425550236 -2.9237973357819005 -0.17738892739058376 TAS(ph)TPT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 T(0.067)AS(0.467)T(0.467)PT(0.91)PPQT(0.09)GGGLEPQANGETPQVAVIVRPDDR 101.6 7.1059e-05 270540000.0 72470.0 60233.0 65395.0 56973.0 52137.0 74379.0 74609.0 67024.0 97290.0 74609.0 True False 72079.82957217388 62237.81899338261 74602.04757647018 64185.77595842669 58776.33790979012 69237.3547993329 70999.8776359421 72025.6712209759 73314.18311920892 69847.3897440215 1.0319616786874053 0.8910543288943705 1.0680720904513925 0.9189430871168753 0.8414965559227789 0.9912661740556911 1.0165000853452688 1.0311862975114379 1.049633828664072 1.0 16.09191858145877 2.482807393829715 20.53538755351787 1.0241216303983753 0.9482708024401397 0.24212950914752407 0.06183187981519563 34.91620932433778 126108.04832552113 0.02093292969603999 0.018134549981486114 303.953671620537 -2.482807393829715 -0.07585082795823561 TAS(ph)TPTPPQT(ph)GGGLEPQANGETPQVAVIVRPDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 T(0.018)AS(0.447)T(0.447)PT(0.202)PPQT(0.887)GGGLEPQANGETPQVAVIVRPDDR 92.702 0.00082471 258840000.0 69753.0 65077.0 64477.0 55519.0 66091.0 78454.0 73440.0 70511.0 96991.0 72423.0 True False 69377.45759828678 67243.04860512282 73554.80115586943 62547.69970750871 74507.29709795231 73030.65964085108 69887.42663195576 75772.88886760316 73088.86766281408 67800.90213555026 1.0232527210269946 0.9917721813005945 1.0848646380665516 0.9225201691632489 1.098913063855616 1.0771340401171252 1.0307742881095305 1.1175793607600528 1.0779925540915651 1.0 16.049016849044193 TASDTDSSYCIPTAGMS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TASDTDSSYCIPTAGMSPSR 20 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 TASDTDSSYCIPTAGMS(0.997)PS(0.003)R;TASDTDSSYCIPTAGMS(0.951)PS(0.049)R 336.94 4.7840999999999976e-80 646970000.0 359960.0 361380.0 338200.0 336860.0 317910.0 383360.0 385300.0 340830.0 448680.0 414880.0 True False 358022.0153553156 373408.31484117714 385815.6203129028 379506.4414609664 358393.9540998016 356859.22553237155 366661.56701106386 366264.4652996717 338108.8260039738 388402.0032033614 0.9217821030852426 0.9613964700528751 0.9933409640807016 0.9770970240394528 0.92273971592302 0.9187883239251098 0.9440259421604615 0.9430035434392473 0.8705125700058378 1.0 18.56719111598718 3.2353938975930157 24.992413076639878 0.9313430155699107 0.9653990811301653 0.15475295828547664 0.03432002338951154 136.81923580464442 1079812.2533813093 0.009483763421847372 0.011798199351073188 1719.4672071938862 -3.2353938975930157 0.034056065560254534 TASEDSCKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASEDSCKR 9 1 P15924 P15924 DSP Desmoplakin 0 81.33800000000002 0.03458 87598000.0 158090.0 136940.0 105810.0 114180.0 114670.0 117750.0 157780.0 133020.0 210450.0 164160.0 False True 157238.86100545037 141497.96511802182 120707.12828299293 128635.17629286094 129272.5447976605 109610.21965368529 150147.57862186778 142946.6278618736 158587.4173855226 153683.16825555317 1.023136513843758 0.9207121815886233 0.7854284216881461 0.8370153853085525 0.8411626742539476 0.7132220196776471 0.9769942949913278 0.9301384756993931 1.031911426512332 1.0 17.22959964074094 2.1131975266915264 21.601737836405213 0.9736997650670215 0.851505896690948 0.38955451254737894 0.08002750017766741 3.7655388483646273 699.2524172991473 0.03115623882540649 0.023010415011480146 129.7769390863874 -2.1131975266915264 -0.12219386837607349 TASESISNLSEAGS(ph)IK ddPTM_BT-474_Trastuzumab_2h_R1 6 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H6A0;F5H1T5 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 TASESISNLSEAGS(1)IK;TASESISNLS(0.005)EAGS(0.995)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK 375.7 1.5655999999999997e-104 2187510000.0 2633150.0 1572410.0 1391560.0 1380535.0 1574940.0 2020990.0 1941020.0 2009320.0 3276260.0 1954380.0 True False 2618973.4129704647 1624746.7163080822 1587479.5523436493 1555310.5894505573 1775499.2735992654 1881283.7181987362 1847125.4471835329 2159265.6615202203 2468869.6226347964 1829649.7951711023 1.4314069391216737 0.8880096729965429 0.8676412046356631 0.8500591717362558 0.9704038872822802 1.028220659037543 1.0095513644515761 1.1801524353015838 1.3493673101545187 1.0 20.803136104653397 1.7318195349267396 3.827952453429124 1.2026077288445138 0.9882820103246827 0.15812972926865898 0.17454637030910267 0.2993973866274419 9.663973352714423 0.09378237969365201 0.045895922553378474 53.928648290022004 -1.7318195349267396 -0.21432571851983118 TASGS(ph)SVTSLDGTR ddPTM_BT-474_Trastuzumab_2h_R1 4 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 TAS(0.235)GS(0.765)SVTSLDGTR;TAS(0.315)GS(0.673)S(0.011)VTSLDGTR;TAS(0.137)GS(0.644)S(0.209)VT(0.007)S(0.002)LDGTR;TAS(0.272)GS(0.727)SVTSLDGTR 397.29 1.8393999999999993e-114 15262847000.0 2221220.0 1937797.0 2117738.0 1669606.0 1478909.0 3705730.0 3649990.0 1896796.0 2990270.0 2847090.0 True False 2209261.19832074 2002295.4017219772 2415897.1026913263 1880977.948411439 1667239.2949695964 3449561.607450112 3473426.0393841485 2038344.5492549278 2253358.0260651326 2665386.2786836186 0.8288709280111737 0.7512214712498899 0.9063966157597577 0.7057055720045264 0.6255150738575171 1.2942070104577044 1.3031604713968907 0.76474639550618 0.8454151820643503 1.0 21.345913198727946 2.7569041763985904 24.848452536146517 1.0271774660738295 0.7675807090882458 0.3923629385836678 0.17245951341065663 947.7412673242255 1283822.5612130633 0.057979000337663 0.0613899047748874 571.3525583943003 -2.7569041763985904 -0.2595967569855837 TASGSSVTS(ph)LDGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 TASGSSVT(0.095)S(0.904)LDGTR 199.87 2.1018e-08 1343000000.0 908540.0 874150.0 831660.0 833940.0 690010.0 1112200.0 1181400.0 911190.0 1138600.0 1260200.0 True False 903648.5215882832 903245.5543151665 948750.4990816937 939516.7184942062 777878.68349031 1035316.2318371858 1124251.1686137335 979187.6247290678 858007.286458334 1179772.9570884993 0.7659512079496641 0.7656096445406237 0.8041805784589825 0.7963538347351095 0.6593460875811195 0.8775554869406307 0.9529385818337579 0.8299797167291868 0.7272647514957165 1.0 20.17007781433611 2.686459913511923 24.980894078790193 0.8704207697050164 0.7633592450227096 0.3720591489363031 0.07704904138730485 407.37462886447804 195324.80151673412 0.024737176379326056 0.023322454559900337 485.80268804112455 -2.686459913511923 -0.10706152468230679 TASPLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TASPLPLRPDAPVEKSPEETATQVPSLESLTLK 33 2 Q9HCK8-2;Q9HCK8;H0YJG4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 TASPLPLRPDAPVEKS(1)PEETATQVPSLESLTLK 216.7 3.2560999999999996e-36 280930000.0 139410.0 97411.0 101100.0 87597.0 83482.0 139650.0 133920.0 128630.0 197240.0 124710.0 True False 138659.43204990722 100653.266248807 115334.00122304677 98686.77121847734 94112.93786341931 129996.32420074001 127441.77797591918 138229.02376990527 148632.84488059158 116750.90103039725 1.1876519223933515 0.8621198240054776 0.9878639068748465 0.8452763134802983 0.8061003129981505 1.113450286494099 1.0915699737746645 1.1839653702879431 1.273076640683857 1.0 16.833074158479413 2.5905011715902324 6.213159736308623 1.1476679521885094 0.9316883730461344 0.4045017795466591 0.11785653001044001 0.22204454732833406 10.70575001638848 0.0377834576974521 0.03547602907793238 389.4943584357946 -2.5905011715902324 -0.21597957914237498 TASRPAPLVQQLS(ph)PSLLPNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TASRPAPLVQQLSPSLLPNSK 21 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 TASRPAPLVQQLS(0.997)PS(0.003)LLPNSK 119.36 3.6799e-05 410300000.0 455130.0 395290.0 335810.0 339260.0 311480.0 403710.0 349160.0 323400.0 562340.0 387780.0 True False 452679.6306496963 408446.9886921489 383089.12908715446 382210.28121488885 351145.13171339827 375802.4779311186 332269.7968792709 347533.750191925 423758.8419699451 363031.5484048389 1.2469429520348057 1.1251005332370299 1.055250241392101 1.0528293832707414 0.9672578960598065 1.0351785666628568 0.9152642472514162 0.9573100512035077 1.1672782815486478 1.0 18.46973540213298 4.911398739478386 0.8709949783421258 0.9975754313356349 1.4524392831399824 0.5639267198073943 0.06418644439619169 2.0305225871331145 0.9813407314320707 0.021247606231647134 0.9460621023530147 81545.26332404367 -4.911398739478386 0.4548638518043475 TASRPDDIPDSPSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TASRPDDIPDSPSSPK 16 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 TASRPDDIPDSPS(0.041)S(0.959)PK 160.95 5.2097e-09 328020000.0 463580.0 356940.0 291180.0 262740.0 313060.0 420170.0 370610.0 323700.0 532720.0 370710.0 True False 461084.1367885803 368820.53212521394 332175.61301806924 296002.8570606608 352926.3353480043 391124.636873791 352682.17843231384 347856.1377152948 401438.2940822789 347050.9704192014 1.3285775753101587 1.0627272751311347 0.9571378308403394 0.8529088874268819 1.0169294006632688 1.1269947938810059 1.0162258817669074 1.0023200260616496 1.1567127837083506 1.0 18.404788037444455 4.721886760445844 3.606008984139053 1.013589427164588 1.359039086629994 0.5795469796719943 0.07928740518478491 0.18807124993116678 4.476698597623715 0.020056203461966418 0.17104448815084494 52709.240747398675 -4.721886760445844 0.34544965946540596 TAST(ph)PTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_BT-474_Trastuzumab_2h_R1 6 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 TAS(0.098)T(0.49)PT(0.408)PPQT(0.004)GGGLEPQANGETPQVAVIVRPDDR;T(0.017)AS(0.084)T(0.893)PT(0.006)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.033)AS(0.147)T(0.672)PT(0.147)PPQTGGGLEPQANGETPQVAVIVRPDDR;TAS(0.007)T(0.984)PT(0.008)PPQTGGGLEPQANGETPQVAVIVRPDDR;TAS(0.001)T(0.996)PT(0.003)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.034)AS(0.124)T(0.472)PT(0.37)PPQTGGGLEPQANGETPQVAVIVRPDDR 256.96 2.5791e-59 11258940000.0 225982.0 174789.0 174629.0 205823.0 216940.0 270858.0 216109.0 227961.0 290416.0 256400.0 True False 224765.3380209606 180606.74620281818 199215.24529752182 231880.1706964923 244566.02309587947 252134.22399114957 205654.98205344932 244972.60738250276 218846.86817502495 240036.3324849159 0.9363804874626013 0.752414204687816 0.829937881633151 0.9660211364505157 1.0188708541080889 1.0504002514160806 0.856766056723404 1.0205646988790626 0.9117239290796841 1.0 17.872893266639988 3.725782547921284 6.057332529925458 0.97650506381794 0.8303176882652216 0.4558558159704271 0.06756559878450617 0.1263997736244235 20.084033972944013 0.0170923435020821 0.028158978223253514 5318.418983317294 -3.725782547921284 -0.14618737555271843 TASTAETPRRLTPVPGSLQEAFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 TASTAETPRRLTPVPGSLQEAFIK 24 2 E9PJY3;Q9C0D2-4;Q9C0D2-3 E9PJY3 CEP295 0 52.853 0.071282 147270000.0 370020.0 369870.0 354490.0 357210.0 335960.0 457490.0 451030.0 144950.0 520050.0 348800.0 False True 368027.85343308665 382180.8993588635 404399.1107176846 402432.749374434 378742.5146090705 425864.79311562213 429211.95579807984 155766.90504118596 391890.64581297763 326539.2853772963 1.1270553648938528 1.1703979167997403 1.2384393818049366 1.2324175601396548 1.1598681431897435 1.3041762880798897 1.314426701528888 0.4770234762448468 1.2001332255020152 1.0 18.316897044798175 1.7693860845498386 24.99999999974653 0.8404370054381168 1.220986490444095 0.40732988618936616 0.1783580246699662 20.248416033136884 16430.493070989418 0.07704900978291022 0.042736932661716 58.80118583925903 -1.7693860845498386 0.3805494850059782 TASTPT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_BT-474_Trastuzumab_2h_R1 3 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 T(0.001)AS(0.004)T(0.014)PT(0.585)PPQT(0.394)GGGLEPQANGET(0.001)PQVAVIVRPDDR;T(0.005)AS(0.303)T(0.303)PT(0.389)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.001)AS(0.031)T(0.156)PT(0.697)PPQT(0.115)GGGLEPQANGETPQVAVIVRPDDR 160.73 5.6674e-14 2438850000.0 61072.4 56907.6 44987.4 49865.0 45982.0 55941.2 50884.3 60943.0 66862.0 71852.0 True False 60743.592984181516 58801.735064629334 51321.234882509394 56177.903887226355 51837.5351433333 52074.116515420246 48422.83201209729 65490.87612228353 50384.75600489821 67266.34384440797 0.9030309886424918 0.8741627938132345 0.7629556171689547 0.8351561966437482 0.7706310790911627 0.7741481629486439 0.7198671615645246 0.9736054076875172 0.7490336641670593 1.0 16.037597224445516 -0.494539343268221 0.6278073759257741 1.0202374722648426 0.8182048106485488 0.3285599197446377 0.0761063800991457 13.790356247131792 4.237771490560743 0.7183003485876259 0.029754594984088247 0.3202289982122793 0.494539343268221 -0.20203266161629385 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7;C9JWW9;C9JSU8;C9J556;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 259.42 1.1868e-59 1037560000.0 107272.0 113902.0 82021.0 92127.0 109997.0 107814.0 110352.0 110929.0 122779.0 113687.0 False True 106694.4594710396 117693.1592147869 93568.84386068772 103790.26875400594 124004.46594670176 100361.0719468571 105013.85217442235 119207.08526604854 92521.76060431039 106431.3983276625 1.0024716497904804 1.105812392433797 0.8791469935650401 0.9751846765601491 1.1651116859795299 0.9429648912239496 0.9866811281678735 1.1200368231473807 0.8693088887122432 1.0 16.699564297543215 TAT(ph)PPGYKPGS(ph)PPSFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 2 T(0.138)AT(0.862)PPGY(0.002)KPGS(0.984)PPS(0.015)FR 75.064 0.069979 436600000.0 577680.0 418020.0 360390.0 319180.0 333240.0 541750.0 534350.0 448910.0 718440.0 456780.0 True False 574569.835066282 431933.5430015741 411129.7794339649 359588.1552737377 375676.13873177354 504300.09764232615 508501.4490847704 482409.94371879165 541390.0886027793 427627.90933096706 1.3436209904194716 1.0100686451390493 0.9614194267095106 0.840890286689475 0.8785117400768505 1.1792965020251236 1.189121285091826 1.1281067797317819 1.266030763637003 1.0 18.705996488719272 2.713982523810419 24.153845467097074 1.16064529554998 0.995328414679002 0.20693520063372584 0.14117457698463037 751.7242778607903 738747.1236269556 0.04669693198833104 0.04404747766168551 517.5860036566344 -2.713982523810419 -0.16531688087097796 TATADDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TATADDKK 8 1 P20290-2;Q96K17-3;Q96K17;E9PL10;P20290 P20290-2;Q96K17;P20290 BTF3;BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 0 68.735 0.08937300000000001 120520000.0 223500.0 166300.0 137540.0 139220.0 196810.0 331900.0 287340.0 280400.0 464390.0 303940.0 False True 222296.70083318444 171835.19496952716 156904.4364808889 156845.23772545197 221872.5869157372 308956.53420856147 273440.2664546046 301324.8718423497 349947.3070071889 284542.28898387455 0.7812431031852082 0.6039003748200863 0.5514274768829912 0.5512194278241033 0.7797525904077867 1.085801816355215 0.9609828733404928 1.0589809793068272 1.2298604480089108 1.0 18.118283557806635 2.9022356814713275 3.0956742933014234 1.062018657764434 0.6169248647185016 0.8458423462560724 0.09004527764750683 0.09700985521982292 1.784071322653305 0.029409503087173456 0.03214293153827477 798.4278578708083 -2.9022356814713275 -0.44509379304593233 TATESFAS(ph)DPILYRPVAVALDTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TATESFASDPILYRPVAVALDTK 23 1 P14618;P14618-3;H3BUW1;H3BTJ2;H3BT25;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 1 TATESFAS(1)DPILYRPVAVALDTK;TATES(0.001)FAS(0.999)DPILYRPVAVALDTK 218.67 1.3348e-32 443760000.0 1091560.0 906730.0 833930.0 850640.0 779260.0 1131150.0 1110020.0 998980.0 1505650.0 1145720.0 True False 1085683.1622437167 936909.9599201404 951340.095350499 958330.9367819169 878494.1419641145 1052956.2629406892 1056324.0919118114 1073528.9603176534 1134602.7321763483 1072599.168699759 1.0121983998550161 0.8734949525048527 0.8869483802637528 0.8934660446769114 0.8190330251971524 0.9816866297007468 0.9848265062449406 1.0008668584174099 1.0578068352894139 1.0 20.032679609661834 2.553423360044033 6.872835765849304 1.0059539138230342 0.8949519725611813 0.5610261380525698 0.04821697486707497 0.1903043265874726 14.58505499298262 0.015560600574618444 0.014592356193146869 357.62128557221945 -2.553423360044033 -0.11100194126185292 TATESFASDPILYRPVAVALDTK ddPTM_BT-474_Trastuzumab_2h_R1 4 TATESFASDPILYRPVAVALDTK 23 1 P14618;P14618-3;H3BUW1;H3BTJ2;H3BT25;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 ;;; 316.76 2.0432999999999993e-73 15560090000.0 14407850.0 12846080.0 11472590.0 10448350.0 11299700.0 16080980.0 15695610.0 14021680.0 19932340.0 15091020.0 False True 14330279.73646262 13273654.007180665 13087830.950460078 11771110.038706545 12738649.816430857 14969339.703155162 14936353.381247142 15068048.962248359 15020281.886672124 14127898.183527762 1.014324958341703 0.9395349424769289 0.9263820265720533 0.8331819698722713 0.9016663095210666 1.0595588606809516 1.057224024919856 1.06654569324521 1.0631646471082885 1.0 23.75204351518082 2.7351916019343965 24.72595101906133 1.0550933365903898 0.9191316395366613 0.6592649509160696 0.045253812157849745 154.23294359754638 1131944.881886001 0.015123480424131117 0.014811993811177794 543.4900554189602 -2.7351916019343965 -0.13596169705372851 TATPPGYKPGS(ph)PPSFR ddPTM_BT-474_Trastuzumab_2h_R1 3 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 1 TATPPGYKPGS(0.99)PPS(0.009)FR;TATPPGYKPGS(0.999)PPS(0.001)FR;TATPPGYKPGS(0.908)PPS(0.092)FR 150.68 4.3397e-07 1723430000.0 2682340.0 2331040.0 2055840.0 2120290.0 2176080.0 2595770.0 2623720.0 2499790.0 3495100.0 2585010.0 True False 2667898.579475988 2408627.257256565 2345284.4023183826 2388718.4966017683 2453190.8893633317 2416330.52968532 2496800.6400162685 2686337.023476417 2633779.436940557 2420032.448661594 1.1024226476597356 0.9952871741817608 0.969112791696429 0.9870605238879568 1.0137016512816082 0.9984703019257772 1.0317219677765606 1.1100417372345992 1.088324017472235 1.0 21.206594961125415 1.956677718127528 6.1912100409673565 1.0770591091601127 1.007926310279039 0.2360387475440373 0.042793303719875844 0.23287745565213006 23.43458879172771 0.018057641634309216 0.01130420009442007 90.5060722874668 -1.956677718127528 -0.06913279888107371 TATPQQAQEVHEK ddPTM_BT-474_Trastuzumab_2h_R1 6 TATPQQAQEVHEK 13 0 P60174;P60174-3;P60174-4;U3KPZ0 P60174 TPI1 Triosephosphate isomerase 0 ;;;;; 241.42 6.9017e-17 4005110000.0 4727840.0 4112920.0 3692920.0 3499810.0 3450090.0 4825690.0 4426020.0 3877720.0 6085950.0 4788070.0 False True 4702385.834752407 4249816.055887356 4212851.036563942 3942885.587156393 3889438.511214453 4492101.408752381 4211916.503561669 4167095.157063185 4586149.1700519 4482491.273327039 1.0490563278357832 0.9480924327004916 0.9398458981130461 0.8796192444631055 0.8676957241073657 1.0021439273027763 0.9396374129325319 0.9296382085246633 1.0231250638103135 1.0 22.095869343730694 1.2387131036972718 24.99999983562138 1.011562557465471 0.9408905650274093 0.2211205142784951 0.05001199659091699 5.7894759635093616 950587.8234468981 0.03944372848514419 0.012320705156530274 17.326590196016433 -1.2387131036972718 -0.07067199243806166 TATPQQAQEVHEKLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TATPQQAQEVHEKLR 15 1 P60174;P60174-3;P60174-4;U3KPZ0 P60174 TPI1 Triosephosphate isomerase 0 ; 125.5 5.412100000000001e-05 677430000.0 316370.0 210817.0 464550.0 339990.0 329810.0 518090.0 408380.0 342110.0 246040.0 367490.0 False True 314666.6990720111 217833.9164034324 529954.6020590155 383032.69914003985 371809.3485629762 482275.6577526778 388625.0992369016 367639.9853993802 185406.73876708982 344036.4735759823 0.9146317999405817 0.6331709953285596 1.5404023781274232 1.1133491026655493 1.080726542445681 1.4018154899095738 1.1296043561819373 1.0686075856378203 0.5389159377200212 1.0 18.392201997090304 1.3808704240212264 7.446417312312204 0.7714483493250137 1.120038436301257 0.22559299964128388 0.25368948455384566 0.32860547724366046 21.42079542937782 0.1703148941564685 0.06229099695871175 24.03645542007803 -1.3808704240212264 0.3485900869762433 TATYNGPPAS(ph)PSLSHEATPLSQTR ddPTM_BT-474_Trastuzumab_2h_R1 3 TATYNGPPASPSLSHEATPLSQTR 24 0 H0YIY6;P27448-6;P27448-7;A2SY06;J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 H0YIY6;J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 TATYNGPPAS(0.998)PS(0.002)LSHEATPLSQTR;TATYNGPPAS(1)PSLSHEATPLSQTR;TATYNGPPAS(0.998)PS(0.002)LSHEATPLSQTR 272.12 4.1073e-52 1120970000.0 379760.0 393830.0 395410.0 351647.0 399600.0 464040.0 433140.0 397750.0 520100.0 427060.0 True False 377715.4143553021 406938.39347473753 451080.29103466764 396165.4741448208 450486.6913852375 431962.0070326637 412187.36344451655 427432.12473357515 391928.323982943 399804.6651755394 0.9447498922741717 1.0178430341628606 1.1282516947035 0.9908975773728885 1.126766970534087 1.0804326328783713 1.030971870384605 1.0691023941551696 0.9802995265471999 1.0 18.608935780902414 4.623772439806306 3.805824571977587 1.055388978750812 0.9443087266560304 0.2858194988589511 0.049942491204356655 0.2585085097620011 5.949321529005617 0.01121549666981133 0.06184609704692633 42050.62351754918 -4.623772439806306 -0.11108025209478156 TAVEHATDEDILAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TAVEHATDEDILAK 14 0 A0A494C1L5;P50851-2;E9PEM5;A0A494BZW2;H0YAC6 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 ;; 213.18 1.395e-09 1199390000.0 1841860.0 1843610.0 1673830.0 1698890.0 1712200.0 2079050.0 1981720.0 1809230.0 2736940.0 2109800.0 False True 1831943.6304098817 1904973.444364219 1909490.714808829 1913969.2998088822 1930238.5209955059 1935330.1670572772 1885856.6326944344 1944243.9296837891 2062457.8101170496 1975150.7577093465 0.9274955966067384 0.964469895236496 0.9667569462005696 0.969024411092843 0.9772613626891311 0.9798392145527915 0.9547912357239658 0.9843521675978795 1.0442027283572806 1.0 20.913531343676677 7.999999999999993 0.15597740568093602 1.015845640517031 0.7263404360386791 0.5237851017774016 0.019972531785711407 57.260540316344446 0.5798770189791143 0.0638983027128176 3.7898818533881906 99999999.99999836 -7.999999999999993 -0.28950520447835193 TAVIPINGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 8 TAVIPINGSPR 11 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR 198.25 5.6958e-08 4233450000.0 3350050.0 3221392.0 3090018.0 3019888.0 3136367.0 3888210.0 3765950.0 3147080.0 4349090.0 3874500.0 True False 3332013.7030255417 3328614.085347411 3525065.6754820654 3402205.511163908 3535764.746746355 3619427.1945618284 3583776.611173937 3381931.0901484317 3277315.044320279 3627226.0928736613 0.918612079233738 0.9176748292275115 0.9718351117973295 0.9379634530773125 0.9747847683641783 0.9978499001407287 0.9880212921424754 0.9323739418374951 0.9035320546351258 1.0 21.790435243747766 4.246720273758181 24.905360138112982 0.9614215495750811 0.9181434270941669 0.27429729302973704 0.029249897660044922 239.38984212696514 730660.9581586809 0.007457177995928879 0.019690018903873095 17649.006934974983 -4.246720273758181 -0.04327812248091423 TAVPS(ph)PVEAAAASDPAAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TAVPSPVEAAAASDPAAAR 19 0 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 TAVPS(1)PVEAAAASDPAAAR;TAVPS(1)PVEAAAASDPAAAR 232.01 2.1382e-20 425670000.0 106086.0 101306.0 95711.0 106870.0 104393.0 106718.0 118216.0 114198.0 122997.0 111015.0 True False 105514.8447632626 104677.90896922967 109186.27686507454 120399.73104237206 117686.82976421196 99340.83584715059 112497.44045102505 122720.03464569409 92686.03742536074 103929.92765527664 1.0152498625154724 1.007196977144389 1.0505758959751477 1.158470267021871 1.1323670902049057 0.9558443663758959 1.0824354734871542 1.1807959210049874 0.8918127772857636 1.0 16.66525162687632 4.092184421954556 4.983211007579815 1.0739247973010213 1.0124530943396604 0.017555800835116764 0.08645168637428548 0.5570298921937881 23.06374966081327 0.021659717976463634 0.04886827369893342 12364.723865671474 -4.092184421954556 -0.06147170296136095 TAVVVGTITDDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 TAVVVGTITDDVR 13 0 J3QQ67;Q07020;F8VYV2;G3V203;H0YHA7;Q07020-2;F8VUA6;A0A075B7A0 J3QQ67 RPL18 60S ribosomal protein L18 0 ;; 160.88 0.00010029 471130000.0 500469.0 493150.0 445625.0 468434.0 457695.0 544498.0 537787.0 496009.0 618060.0 499289.0 False True 497774.53051133355 509564.1996345296 508365.12655806326 527737.6963703794 515979.74527919525 506858.13487042265 511772.1882641557 533023.7102626672 465747.3945796927 467423.94855718076 1.0649315937872617 1.090154240507841 1.087588961000517 1.129034355213018 1.1038795655889988 1.0843649248930554 1.094877979281692 1.1403431764845944 0.9964132047947839 1.0 18.83437212721302 1.2252772991390994 24.999942686327852 0.9982064829046581 1.1010430664756974 0.7933313471573442 0.020645291882846126 113.4887352927424 213585.97702292172 0.020363403609802256 0.0052128573403461735 16.798762849411787 -1.2252772991390994 0.10283658357103931 TAWVFDDKYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TAWVFDDKYK 10 1 P05198;G3V4T5;H0YJS4 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 ; 141.08 3.4789e-05 1279200000.0 1184470.0 1040010.0 1066140.0 844650.0 771240.0 1156900.0 1209070.0 1065270.0 2171300.0 1168850.0 False True 1178092.9451269894 1074626.1041506792 1216243.2449449955 951582.6033960844 869452.8425023784 1076926.226049669 1150582.6650040662 1144765.856731455 1636212.2089293697 1094252.9922971684 1.0766184359741302 0.982063665089655 1.111482676772702 0.8696184612649991 0.7945629106091212 0.9841656670171629 1.0514777415309093 1.0461619614384101 1.4952778017946882 1.0 20.061514898438336 1.426104992454403 6.62930966578746 1.2585522456403941 0.9824135656620836 0.3511855662070371 0.14210192210715658 0.19669614357835483 16.350642026654295 0.08915031986422865 0.034351447406124905 26.675034663706928 -1.426104992454403 -0.27613867997831054 TCAYTNHTVLPEALER ddPTM_BT-474_Trastuzumab_2h_R1 7 TCAYTNHTVLPEALER 16 0 P11216;P11217;P11217-2 P11216 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form 0 ;;;;;; 150.01 7.804099999999998e-07 6132490000.0 1502165.0 1688067.0 1641515.0 1767778.0 1728864.0 1717081.0 1739401.0 1610335.0 1965608.0 1737396.0 False True 1494077.5105462207 1744253.289636951 1872626.0436958424 1991578.5135456373 1949024.582620238 1598383.2320439026 1655259.5284729085 1730506.3748154417 1481210.2461977787 1626513.8998204505 0.9185765401151202 1.0723875706377288 1.1513126594876073 1.224446046090037 1.198283385611023 0.9827049324449959 1.0176731527813143 1.0639358046718634 0.9106655936732471 1.0 20.633351720701896 2.719641995985111 24.841433799987904 1.0061826433040206 1.1190647196933765 0.3149093303616898 0.08600896357928647 1055.074629685115 1385382.8593352868 0.02973904055704876 0.028080321260392865 524.375021506936 -2.719641995985111 0.11288207638935588 TCDISFSDPDDLLNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TCDISFSDPDDLLNFK 16 0 P61081 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 ; 208.95 3.1468000000000004e-11 157760000.0 375521.0 345515.0 356624.0 343224.0 310061.0 410541.0 403779.0 379418.0 548964.0 457157.0 False True 373499.2366603048 357015.25790677185 406833.5593686235 386676.12320845004 349545.43047447 382161.26697956334 384246.6671844288 407732.0978055659 413679.1779407274 427980.848868201 0.872700817450189 0.83418512499076 0.9505882341336026 0.9034893132041266 0.8167314761836794 0.89294011166666 0.8978127600816073 0.9526877169476553 0.9665833857629506 1.0 18.70718671531315 1.609863407401911 1.4265042765663998 0.9913911734923276 0.8775027610638035 0.6113901820295401 0.034751362193886116 0.2717645856913673 1.0723063540099629 0.03029268796129807 0.010800539012046147 40.72521703029885 -1.609863407401911 -0.1138884124285241 TCDRFPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TCDRFPK 7 1 E7EVJ3;P52848 E7EVJ3 NDST1 Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1;Heparan sulfate N-deacetylase 1;Heparan sulfate N-sulfotransferase 1 0 67.757 0.058638 152850000.0 157720.0 128890.0 139030.0 109520.0 124630.0 154430.0 164480.0 139620.0 176650.0 143670.0 False True 156870.85304433922 133180.02573434956 158604.2155295766 123385.22077066127 140500.89176011548 143754.61758911778 156523.47402538237 150039.1533759946 133116.97448872688 134500.8575979247 1.1663186082670722 0.9901797513624513 1.1792059795165486 0.9173563869719523 1.0446096349818617 1.0688007508387505 1.1637358810996716 1.1155256260485704 0.9897109718561439 1.0 17.037255846091043 2.4716482170101535 24.79634751064659 1.088133490963758 1.0546581702452178 0.0 0.08660888200573509 581.5018058645987 2634527.2417510087 0.028940654580678623 0.024280820822664608 296.2430818029819 -2.4716482170101535 -0.03347532071854031 TCEERPAEDGS(ph)DEEDPDSMEAPTR ddPTM_BT-474_Trastuzumab_2h_R1 5 TCEERPAEDGSDEEDPDSMEAPTR 24 1 Q9H6Y2;D6RGJ8 Q9H6Y2 WDR55 WD repeat-containing protein 55 1 TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR 286.74 5.228699999999998e-53 11848920000.0 3718880.0 3871940.0 3442710.0 3848130.0 3835980.0 4003070.0 3883880.0 3737230.0 4674490.0 4111740.0 True False 3698857.963286412 4000815.182262845 3927413.6434282493 4335302.863442338 4324469.315365226 3726347.1931131883 3696001.8865375887 4016121.0798694124 3522524.57445689 3849325.232962284 0.9609107413456778 1.0393549362894392 1.020286259471474 1.1262500830843192 1.1234356812290685 0.9680520526569129 0.9601687731886703 1.0433311910042917 0.9151018324700245 1.0 21.876174140228496 2.705891738792643 24.751737823800823 0.9838079180257774 1.0553669324220345 0.3302257796173349 0.05422137668456866 774.3910381584919 586720.689745705 0.018366470134132565 0.01731712188328021 508.032784035789 -2.705891738792643 0.07155901439625711 TCEESSFCKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TCEESSFCKR 10 1 Q14697;Q14697-2 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;; 160.77 1.1669e-05 1961960000.0 1048970.0 1432360.0 1208210.0 1261720.0 1243110.0 1486470.0 1553160.0 1309690.0 2057420.0 1409490.0 False True 1043322.4620715223 1480035.2367200947 1378315.4660504214 1421453.6226329326 1401412.690009768 1383713.8276739991 1478027.7171526183 1407425.718271067 1550396.409015549 1319535.1414748994 0.7906742528322188 1.1216338164861586 1.044546236570722 1.0772381711972556 1.062050297836972 1.0486373452148947 1.12011243254997 1.0666072270708369 1.1749565133086235 1.0 20.331598341933386 4.743570649610671 24.98855011742073 1.0801913221452963 0.7906741322126333 0.7773239163622221 0.046379781539880385 219.46151795484744 1094573.2072156128 0.010095148774298172 0.08476944856734382 55407.76721571241 -4.743570649610671 -0.28951718993266307 TCENFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCENFR 6 0 Q13427;E9PG73;Q13427-2;C9JN15;C9JT64;C9J679 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G;Peptidyl-prolyl cis-trans isomerase 0 108.24 0.07115 142780000.0 111520.0 140380.0 118370.0 123060.0 121850.0 131440.0 114360.0 117060.0 151600.0 148840.0 False True 110919.58871103686 145052.46343849789 135035.46710951583 138639.3833823739 137366.87523846657 122353.86217647875 108827.96990237554 125795.61161863578 114240.21133592418 139340.903771665 0.796030352241711 1.0409898279129315 0.9691014156962524 0.9949654382144623 0.9858331008356798 0.8780900572955767 0.7810195495840161 0.9027902662722382 0.8198612772250078 1.0 17.088259300259658 2.677102789597258 6.05791404820834 0.8644326534306417 0.9646842161381264 0.19376092255850397 0.08034629419431062 0.29482779554158145 22.251142619231576 0.024531823500740176 0.023205241484290096 475.44774245178377 -2.677102789597258 0.1002515627074847 TCFETFPDKVAIQLNDTHPALSIPELMR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCFETFPDKVAIQLNDTHPALSIPELMR 28 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 137.03 3.8406e-06 419470000.0 237850.0 322890.0 321950.0 299420.0 305520.0 347430.0 368230.0 344000.0 411400.0 370830.0 False True 236569.4420276192 333637.19845887343 367277.7615604344 337326.5412997761 344426.1610410852 323412.9818622494 350417.3081247962 369671.02679660567 310015.98247756757 347163.311916464 0.6814356065497601 0.9610381829147738 1.0579394450782589 0.971665293309983 0.9921156678098594 0.9315874424543756 1.0093730993357823 1.064833218567628 0.8929975369982788 1.0 18.40525496682498 4.730549836906166 4.14085148520416 0.9952344056558365 0.6577444157875034 0.7775147426082333 0.04914256203298437 0.09134077937724097 3.4766560390260057 0.01170595337942728 0.09073276242326667 53771.21340481564 -4.730549836906166 -0.3374899898683331 TCFSLHLDGNVLDHFSELR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCFSLHLDGNVLDHFSELR 19 0 K7EIG1;A0A494C0R8;O75153;I3L2B0;I3L318 K7EIG1 CLUH Clustered mitochondria protein homolog 0 120.4 2.3634e-05 13106000.0 15347.0 23226.0 25818.0 29773.0 25527.0 29484.0 28431.0 16049.0 26481.0 27394.0 False True 15264.373457212001 23999.063369586514 29452.949985921106 33542.258747305525 28777.712139617 27445.840477870526 27055.68391303286 17246.657875170706 19955.11237722037 25645.691466816665 0.595202257539548 0.9357931877422472 1.148456068109168 1.3079100943995348 1.1221265832061071 1.0701930385999965 1.0549797008998805 0.6724972846798227 0.7781077926107229 1.0 14.646428849765002 1.7543425988401904 24.999999999997296 0.7887978048078789 1.0495563755541049 0.20781904670046913 0.18970390185790734 7.593439522011757 12043.243029979474 0.09192198998237569 0.05097566385959249 56.79924969778701 -1.7543425988401904 0.260758570746226 TCFVDCLIEQTHPEIR ddPTM_BT-474_Trastuzumab_2h_R1 5 TCFVDCLIEQTHPEIR 16 0 Q15029;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ;;;; 341.78 3.5998999999999986e-72 1531270000.0 759741.0 920307.0 872117.0 881825.0 869108.0 880635.0 875785.0 835902.0 1035795.0 938187.0 False True 755650.6388711609 950938.8621576694 994903.4930231447 993463.9545844462 979783.7521932953 819758.77524181 833419.9337264063 898281.2518643497 780537.2011919104 878311.1024376976 0.8603450836200291 1.082690244400188 1.132746119526273 1.131107134849086 1.1155315576382523 0.9333353215809532 0.948889216375953 1.0227369884898714 0.8886796478213451 1.0 19.744372514933694 2.7349031816918536 24.986810109689635 0.964505543906515 1.0729891072632536 0.2945955722063328 0.0810468011332331 417.85478239044045 2854683.6991143646 0.026304917367956475 0.025680333464627815 543.1292368944551 -2.7349031816918536 0.10848356335673859 TCHSFIINEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TCHSFIINEK 10 0 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 107.06 0.0037331 0.0 847750.0 919670.0 803390.0 833790.0 823600.0 990140.0 905040.0 387020.0 1227300.0 883960.0 False True 843185.80819388 950280.6599977444 916500.3288089376 939347.7285095854 928480.5781403437 921693.9523388521 861259.7576114541 415901.3976477397 924848.3599774401 827544.9160037689 1.01890035439483 1.148313090468453 1.107493153646253 1.1351018057674918 1.1219700105512038 1.1137690952048027 1.04074079962994 0.5025725970937456 1.1175808612824927 1.0 19.658478092504474 1.9780613709081973 24.553979310238002 0.8065002080185314 1.1085012998261294 0.2890271819067839 0.15398584422700476 526.6640111494248 589447.8399378791 0.059603217362795294 0.03884135075581894 95.07391347639293 -1.9780613709081973 0.30200109180759804 TCLS(ph)PGSSEMSLQPDLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TCLSPGSSEMSLQPDLVR 18 0 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 TCLS(0.999)PGS(0.001)SEMSLQPDLVR;TCLS(1)PGSSEMSLQPDLVR 355.06 1.5561999999999999e-90 433110000.0 228274.0 237400.0 214003.0 217003.0 227870.0 234308.0 247060.0 210024.0 262160.0 216915.0 True False 227044.99814762556 245301.71548866978 244132.76225257848 244475.55755018097 256887.89380869383 218110.8394617044 235108.7639391475 225697.0573602627 197554.18076402307 203071.29898972512 1.1180555759340145 1.2079585677987976 1.2022021992626883 1.2038902531595603 1.2650132987118563 1.0740603942891025 1.157764613260505 1.1114178048946364 0.9728316199623009 1.0 17.631626825685046 1.5057292398665951 1.1198743214580187 0.9794918369125429 1.1895031776249825 0.6741647516312669 0.051358439944194686 0.2601850685791024 0.6314100461795661 0.04564206681653704 0.016205803741467427 32.04271004505114 -1.5057292398665951 0.21001134071243954 TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_BT-474_Trastuzumab_2h_R1 4 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 T(0.219)CNS(0.697)PQNS(0.065)T(0.017)DS(0.001)VSDIVPDSPFPGALGSDTR;T(0.067)CNS(0.657)PQNS(0.264)T(0.012)DSVSDIVPDSPFPGALGSDTR;T(0.198)CNS(0.627)PQNS(0.156)T(0.018)DS(0.001)VSDIVPDSPFPGALGSDTR;T(0.038)CNS(0.795)PQNS(0.141)T(0.026)DS(0.001)VSDIVPDSPFPGALGSDTR 170.18 1.1402e-12 1357350000.0 448572.0 487405.0 477499.0 457546.0 486893.0 536613.0 535618.0 523064.0 592378.0 573777.0 True False 446156.9381930348 503627.98078245553 544726.7087042894 515471.27668675117 548895.9375090904 499518.206361129 509708.11108054034 562097.6917451734 446394.37935852364 537158.0606247965 0.8305878118520392 0.9375787458102361 1.0140901694199458 0.95962681093751 1.0218518118682627 0.9299277865813153 0.9488978169436241 1.0464288501812078 0.8310298440635873 1.0 19.03498714314372 4.683172892987521 3.262688749228539 0.9736804676956649 0.8187738016201207 0.3378502952305459 0.05759254334736499 0.28904311552538103 5.041725980515399 0.013158943761872908 0.10371826943123066 48213.969963214884 -4.683172892987521 -0.15490666607554415 TCNSPQNS(ph)TDSVSDIVPDSPFPGALGSDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 T(0.06)CNS(0.282)PQNS(0.645)T(0.013)DSVSDIVPDSPFPGALGSDTR 186.56 2.7281e-18 314460000.0 85060.0 104760.0 120920.0 116260.0 84181.0 120800.0 122960.0 89310.0 119830.0 137660.0 True False 84602.04641105433 108246.87327124272 137944.48494451868 130978.50407959375 94900.95137012174 112449.38033261297 117011.95504718526 95974.76570699095 90299.50213973493 128874.42094334468 0.6564688771579178 0.8399407149913001 1.070379086360057 1.0163266156375133 0.7363831447346852 0.8725500336645359 0.907953294305203 0.7447153981718609 0.7006782376111089 1.0 16.97560641974859 1.7451271078905422 24.99999999999408 0.7907179274214129 0.8782918292104472 0.02436685518341275 0.13479635019350725 3.8185384337257937 14584.297145749506 0.06352924479960077 0.03523025794205226 55.60669813244291 -1.7451271078905422 0.08757390178903435 TCNTNPHLNALSTDSACR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCNTNPHLNALSTDSACR 18 0 Q9NZB2;Q9NZB2-4;Q9NZB2-6;A0A0C4DG79 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 0 131.54 1.6715e-05 148080000.0 104750.0 108730.0 101880.0 100140.0 102860.0 121990.0 112770.0 113710.0 125180.0 111400.0 False True 104186.03763881909 112349.01232132716 116223.8184431654 112817.71373241443 115958.61130101485 113557.11843357176 107314.88427676527 122195.61760768038 94331.06632606186 104290.35662566168 0.998999725475894 1.077271340864152 1.114425362071946 1.0817655378949438 1.1118823930887018 1.0888554043512582 1.0290010289442175 1.1716866406573678 0.9045042070826591 1.0 16.67024623736128 1.2289289750343035 24.999999764799803 0.9522520769094649 1.0874029353209071 0.532944372983099 0.04935120013363004 159.62140598206534 414300.72565121547 0.043179507769556605 0.011349242213458448 16.94060729359809 -1.2289289750343035 0.13515085841144225 TCNVLVALEQQS(ph)PDIAQGVHLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCNVLVALEQQSPDIAQGVHLDR 23 0 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 1 TCNVLVALEQQS(1)PDIAQGVHLDR 79.365 0.00010357 0.0 18552.0 23275.0 23638.0 25734.0 24215.0 22708.0 19339.0 17340.0 22981.0 21087.0 True False 18452.11809332098 24049.69430496538 26966.024934820776 28991.921761433532 27298.636716450263 21138.24940888224 18403.498687845753 18633.998850735887 17317.640479623187 19741.209606511016 0.9347004799156344 1.2182482626106834 1.3659763242636804 1.4685990544303558 1.3828249261608907 1.0707676900360985 0.932237641698305 0.943913732854042 0.8772329976128468 1.0 14.26892277055197 2.5170254968436097 3.7874907000918956 0.9378340444542824 1.2856848593620802 0.5746972795830252 0.1363464748862945 0.17309227055827867 5.212973651049689 0.050931562357896774 0.04557525983388797 328.87093787868287 -2.5170254968436097 0.3478508149077978 TCNVLVALEQQSPDIAQGVHLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 TCNVLVALEQQSPDIAQGVHLDR 23 0 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 ;; 242.64 2.3760999999999997e-37 1889800000.0 831840.0 808510.0 791490.0 826670.0 779870.0 937210.0 925440.0 860500.0 983540.0 942550.0 False True 827361.4658661132 835420.7665953843 902924.9122455912 931326.3372396157 879181.8218483623 872422.8786550341 880672.9316758859 924714.8795304622 741159.7457607841 882395.652042347 0.9376309413483005 0.9467643733984443 1.0232653687217612 1.055452092362441 0.9963578354148209 0.9886980705715963 0.9980476780880847 1.0479594696439918 0.8399403873368306 1.0 19.751066156580524 4.310439661438133 7.279253024722524 1.000167466250199 0.9409259387786088 0.11004362112482668 0.056328573490773096 0.419069948158013 35.23075579777275 0.013208319581657328 0.03648677185764284 20438.059607628224 -4.310439661438133 -0.05924152747159017 TCPSLS(ph)PTSPLNNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 TCPSLS(1)PTSPLNNK;TCPSLS(0.983)PT(0.017)SPLNNK 221.73 4.3622e-12 391130000.0 572660.0 554810.0 493740.0 496610.0 501890.0 632520.0 631120.0 557300.0 767670.0 631440.0 True False 569576.8621885075 573276.5154602734 563254.300334986 559480.775081429 565802.7165649078 588795.3811919229 600590.3144874711 598888.5559120588 578488.0147509822 591140.9585970172 0.9635212277293578 0.9697797236396165 0.9528257045016539 0.946442243503599 0.9571367172861006 0.9960321182774052 1.0159849453045522 1.0131061757815416 0.978595724654125 1.0 19.17314265902093 2.6823792808516735 4.142381385383575 1.0045875080771214 0.9575095616549802 0.7854532331998405 0.011163704938128273 0.0989317107842903 3.5294426059586463 0.003874490465208632 0.0037088984318265805 481.2594615850281 -2.6823792808516735 -0.04707794642214114 TCS(ph)FGGFDLTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TCSFGGFDLTNR 12 0 O94885;A0A1B0GWB9 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 T(0.002)CS(0.998)FGGFDLTNR;T(0.006)CS(0.994)FGGFDLTNR 205.86 1.0164e-07 224430000.0 524800.0 315070.0 282840.0 315650.0 248070.0 342470.0 347260.0 308860.0 490070.0 377770.0 True False 521974.53511076164 325556.9144861631 322661.4135106485 355611.25763567624 279660.2440739133 318795.854987665 330461.70713797596 331908.70155930147 369298.81510155956 353660.39517483144 1.4759202393944177 0.9205354032509764 0.9123481676571145 1.0055162027964155 0.7907592930660605 0.9014180251369928 0.9344040544167032 0.9384955343818551 1.0442187480987157 1.0 18.432005141640637 4.7393190129053675 24.965281701963576 0.9323815472511796 1.4759204111750677 0.8549280434773426 0.06635302369398105 20.788798005333373 684210.5643187313 0.015456300829406534 0.09311488437303778 54867.98521092829 -4.7393190129053675 0.5435388639238881 TCS(ph)LPDLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TCSLPDLSK 9 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 T(0.005)CS(0.995)LPDLSK 123.62 0.00057972 452140000.0 746230.0 489010.0 402720.0 454280.0 379720.0 601110.0 495550.0 516120.0 921230.0 601210.0 True False 742212.3805939467 505286.40223721246 459419.4754950097 511791.8014216216 428075.0912232295 559556.680560737 471578.3533151639 554635.4952042559 694205.2103495611 562840.2630782233 1.3186909844273067 0.8977438811391287 0.8162519734860542 0.9093020435719841 0.7605623110224006 0.9941660489966938 0.8378546885328709 0.9854225640697863 1.2333964996620732 1.0 19.10236601066154 1.4358487904818187 6.7683313745192075 1.1169548723732703 0.9222435458504813 0.17939089696391775 0.15326964409303825 0.2820774083577262 27.19559470279774 0.09358829716927386 0.03709477935949391 27.280277924100627 -1.4358487904818187 -0.194711326522789 TCSDGGPSSELAHS(ph)PTNSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TCSDGGPSSELAHSPTNSGK 20 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 TCSDGGPSSELAHS(1)PTNSGK;TCSDGGPSSELAHS(1)PTNSGK 306.37 9.687999999999999e-56 1224510000.0 492040.0 488360.0 429790.0 387270.0 469610.0 570940.0 530930.0 469920.0 646990.0 518770.0 True False 489390.91131078365 504614.76738014625 490300.6961983514 436298.34229231265 529412.0499034569 531472.2616481956 505246.88755043945 504987.8166054095 487547.98372183077 485661.6544586585 1.0076787138080356 1.0390253435647783 1.009552003328045 0.8983586377199811 1.0900841049383747 1.0943261770184425 1.0403269084803732 1.0397934693203088 1.0038840399398525 1.0 18.889592056935538 TCSNVNWAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCSNVNWAR 9 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 93.143 0.022330000000000003 147910000.0 310430.0 195170.0 139180.0 120500.0 120840.0 160490.0 147700.0 107870.0 243020.0 129060.0 False True 308758.67937201523 201666.11546724377 158775.33422575353 135755.28764485658 136228.25772520533 149395.70405282316 140555.18673120733 115919.80715276134 183130.97730116278 120823.28030617499 2.555456850613543 1.6690998204667773 1.3141120968029114 1.1235855151494216 1.1275000759786773 1.2364811125326474 1.1633121230861325 0.9594161560504905 1.5156928105005556 1.0 16.882538935278102 4.836764381664184 1.3498240636910632 1.1466805138025231 3.404177710484153 0.8972760635340785 0.14349734224993121 0.4342915886704378 0.5948373788066891 0.03781273078214657 1.4244173662339543 68669.57850001239 -4.836764381664184 2.25749719668163 TCTDIKPEWLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TCTDIKPEWLVK 12 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 132.79 0.00015937 2922400000.0 3402600.0 2910800.0 2715300.0 2402000.0 2509000.0 3459700.0 3686600.0 3273700.0 4721700.0 3671200.0 False True 3384280.7796644024 3007684.2183842394 3097590.63818931 2706092.953717393 2828506.277991894 3220539.082257792 3508265.0738203675 3518000.1175117637 3558100.302538482 3436900.872927553 0.9846896680443598 0.8751152068643439 0.9012743610352607 0.7873642719908713 0.8229816286736754 0.9370474160677599 1.020764113813974 1.0235966202060203 1.0352641621309524 1.0 21.71267681143352 2.4075562724960653 3.4041225457731508 1.0221561857735397 0.8711926341423233 0.6600520660009888 0.049086792979488536 0.14750682640259236 3.4677006044091967 0.018928146259675486 0.01567114142173518 255.59730626889328 -2.4075562724960653 -0.15096355163121644 TCVQEITAHR ddPTM_BT-474_Trastuzumab_2h_R1 3 TCVQEITAHR 10 0 F5GYK2;Q9NRL3;Q9NRL3-3;M0R317;Q13033-2;Q13033 F5GYK2;Q13033-2 STRN4;STRN3 Striatin-4;Striatin-3 0 ;; 134.13 0.00017881 765220000.0 461520.0 566010.0 540900.0 600080.0 564460.0 548840.0 570860.0 487370.0 546955.0 579520.0 False True 459035.22759969236 584849.3006897292 617054.0184129188 676050.0664724112 636340.6351834623 510899.9826303911 543245.3209030265 523740.0242147139 412165.2690715065 542534.5374479668 0.8460940196709917 1.0779945981702976 1.1373543540941835 1.2460959069121929 1.1729034582328175 0.9416911687016614 1.0013101165105602 0.9653579414102178 0.7597032826892359 1.0 19.049355456084054 2.7218292387325262 22.97510672992963 0.9399748179919576 1.1057095396137748 0.3279101160892284 0.11571655436860812 352.5765621430092 484147.5399258086 0.038964833743364166 0.03686040168853726 527.0225994247617 -2.7218292387325262 0.16573472162181724 TCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR 35 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 244.49 7.776699999999998e-48 125350000.0 26785.0 36412.0 38768.0 38481.0 37619.0 40116.0 46058.0 30245.0 42331.0 47019.0 False True 26640.792536093257 37623.95140848119 44226.197422503246 43352.69065445419 42409.55666471787 37342.87534290645 43829.99858135372 32502.035480998085 31899.092256339096 44018.20716500885 0.6052221172076876 0.8547361156132999 1.0047250960656966 0.9848808810395238 0.9634548836970868 0.8483506655080496 0.9957243014703075 0.738377084717679 0.7246794976624233 1.0 15.42581276587788 -0.6908344837654552 7.501757024503983 1.0000018487674185 0.8654480204130146 0.09710429518605956 0.12819007430538681 0.0 0.0 0.12703682683105624 0.029942867237553676 0.20378185733914855 0.6908344837654552 -0.13455382835440388 TCVVVAEERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TCVVVAEERPR 11 1 Q9P265;H0Y7Q3;E7EPU2;A0A0U1RQW6;Q9Y2E4 Q9P265 DIP2B;DIP2C Disco-interacting protein 2 homolog B;Disco-interacting protein 2 homolog C 0 75.73899999999998 0.033985 304620000.0 72404.0 141500.0 152790.0 153720.0 153500.0 124600.0 127460.0 108190.0 85303.0 120450.0 False True 72014.18490884063 146209.7419614437 174301.5039255126 173180.9362387332 173047.31513421924 115986.69527685072 121294.27285551564 116263.6871776884 64281.218651638126 112762.77787756697 0.6386343637882934 1.2966135165647659 1.545736165836228 1.5357987759645804 1.5346138006825856 1.0285902623185121 1.0756587868668135 1.0310466748515417 0.5700570690217648 1.0 16.78293139825972 2.0316927149009194 1.3482469244124857 0.8393852319741844 1.3193497370564289 0.30395851419276876 0.27966791937725866 0.5410172509208716 1.8346754055979675 0.2010373785092979 0.09689925514286236 107.57038299630307 -2.0316927149009194 0.47996450508224453 TDAASKPFAEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDAASKPFAEVR 12 1 Q13427;E9PG73;C9JM79;Q13427-2;C9JN15 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G;Peptidyl-prolyl cis-trans isomerase 0 ;;; 100.11 0.0031163 1795880000.0 3053140.0 3036920.0 2896850.0 2714940.0 2536160.0 3216210.0 3326660.0 2954010.0 4601600.0 3174360.0 False True 3036702.2334757466 3138002.0463430895 3304701.300128417 3058651.125630933 2859124.9430019646 2993880.9728439795 3165736.7467246954 3174453.2263588407 3467597.3382809293 2971769.627093678 1.0218498115702095 1.055937182254596 1.1120314542552003 1.0292356102388136 0.9620950819791919 1.0074404642771473 1.0652699044578071 1.0682029984482286 1.1668459448090394 1.0 21.50289085117261 1.846439624860594 2.674125815145961 1.0881751452597341 1.0335517610950746 0.13332198635395165 0.05212562765593625 0.5075254796987065 6.609097683049579 0.03024441402826564 0.015020162268832798 70.21657226467735 -1.846439624860594 -0.054623384164659505 TDALTSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDALTSSPGR 10 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 TDALTS(0.024)S(0.976)PGR 107.03 0.0024530000000000003 848580000.0 1323300.0 1431500.0 1257600.0 1195800.0 1234300.0 1597300.0 1527900.0 1317300.0 1519700.0 1454500.0 True False 1316175.4998324523 1479146.6121399764 1434659.1487448441 1347188.1573918653 1391480.7887307287 1486882.4106397554 1453989.6398551892 1415603.6151138614 1145190.2979367024 1361672.5647399006 0.9665873675613499 1.0862718765450892 1.0536006863139562 0.98936278241693 1.0218908897503725 1.0919529769065823 1.067796823925084 1.0396064749856089 0.8410173837610149 1.0 20.376948396008917 1.272254147669898 21.134310870141434 0.9205094884914864 1.0423564327725103 0.45822138038603655 0.051744997840287674 24.023750711570173 15069.091405343017 0.03233467866513263 0.011804223426569784 18.71777177636418 -1.272254147669898 0.12184694428102394 TDASS(ph)ASSFLDSDELER ddPTM_BT-474_Trastuzumab_2h_R1 1 TDASSASSFLDSDELER 17 0 Q14498-2;Q14498;G3XAC6;H0Y4X3;A0A0U1RQH7;A0A0U1RQW2;Q14498-3 Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 1 T(0.006)DAS(0.448)S(0.504)AS(0.029)S(0.013)FLDSDELER 59.345 0.05983400000000001 0.0 113860.0 91827.0 89309.0 86357.0 81395.0 95137.0 103040.0 96687.0 151360.0 113470.0 True False 113246.99041103537 94883.40618440625 101882.93091225601 97289.78734561737 91760.17078403756 88560.40311840898 98055.56154897493 103902.27490663783 114059.35612008901 106228.24745344548 1.0660722842167367 0.8932031588489577 0.9590945285707193 0.9158560898621114 0.8638019828412536 0.8336803556626553 0.9230648523308056 0.978104010914545 1.073719644768455 1.0 16.69680792270903 1.5420808286072465 3.2633817429557217 1.0357082862351283 0.9167620812106438 0.35763952186172554 0.06115675113380496 0.21912249658740754 5.167138989388228 0.0418499516974227 0.016242732766930692 34.84021517803184 -1.5420808286072465 -0.1189462050244845 TDCDIEDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDCDIEDDR 9 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 161.79 0.00014952 412010000.0 793490.0 782950.0 678110.0 669040.0 649570.0 837150.0 735190.0 741460.0 868610.0 758270.0 False True 789217.9380050258 809010.01744673 773581.9937622184 753740.3954017826 732288.889196968 779279.79093913 699626.0510014645 796791.5102575915 654552.7042776858 709876.5594123919 1.1117678525098922 1.139648868130534 1.0897415663401526 1.0617907936355857 1.0315721508020046 1.0977680282670377 0.9855601536985354 1.1224367105699962 0.9220655275890488 1.0 19.43720865031259 7.999999999999602 0.1533073813431341 0.9783583711473435 1.5653180975777183 0.39998398318676043 0.05142247123871911 68.66678015022227 0.6863579837945801 0.16022099427896902 9.01956899149157 99999999.99990837 -7.999999999999602 0.5869597264303749 TDCDIEDDRLAAMFR ddPTM_BT-474_Trastuzumab_2h_R1 6 TDCDIEDDRLAAMFR 15 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;;;; 296.85 3.8789e-44 3625180000.0 2502100.0 2786880.0 2541670.0 2634920.0 2625900.0 3061670.0 2889620.0 2590670.0 3680680.0 2991280.0 False True 2488628.971609443 2879639.6160954614 2899515.0434083208 2968500.601835564 2960292.800071312 2850023.9592959513 2749838.0411796286 2783998.9505557017 2773625.7325851577 2800373.9494363475 0.888677375430645 1.028305386384225 1.0354028053974464 1.0600372148273471 1.0571062484948315 1.0177297785067587 0.9819538714581706 0.994152567058431 0.9904483410665302 1.0 21.417188060414016 2.284929368451812 8.525261267209569 0.9911640455174464 1.020188545834088 0.04900392195059511 0.04552030620769965 0.753939783675345 126.21858413712111 0.016190477797233892 0.01346940426870031 192.72114553779622 -2.284929368451812 0.02902450031664161 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(ph)PEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEAR 42 0 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.001)EAPS(0.999)PEAR;TDCEPVGLEPAVEQSSAAS(0.001)ELAEAS(0.001)S(0.005)EELAEAPT(0.091)EAPS(0.902)PEAR 155.93 5.4291e-14 78012000.0 126684.0 135025.0 107618.0 121727.0 119321.0 134308.0 122006.0 124258.0 148766.0 134890.0 True False 126001.94741991545 139519.22550066377 122769.67896757521 137137.6257190494 134515.822079024 125023.60408702468 116104.103671819 133530.76292933893 112104.61266226969 126281.20471486096 0.9977886076112746 1.1048296998408738 0.9721928076690853 1.0859702045819242 1.0652085746470075 0.9900412683686706 0.9194092179749035 1.0574080539605815 0.887737909338119 1.0 16.94628040348721 2.6342676456896026 5.406813825255581 0.9758721689994067 1.04651068271281 0.304997932868295 0.0560814537789228 0.3019305855894503 12.905262959077389 0.017470239893460922 0.016428646549568406 430.792015902139 -2.6342676456896026 0.07063851371340324 TDCNHIFLNFVPTVIMDPSKIEESVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDCNHIFLNFVPTVIMDPSKIEESVR 26 1 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 152.41 6.0632e-08 132940000.0 311510.0 282030.0 283450.0 274600.0 296240.0 351280.0 353480.0 326000.0 528110.0 352040.0 False True 309832.8647720143 291417.19805926475 323357.29620843317 309364.33184462803 333964.4080479548 326996.8404241748 336380.8219752683 350327.7753944576 397964.36681144434 329572.50580339244 0.9401053161784257 0.8842278798374966 0.9811416016642268 0.9386836777858537 1.0133260577482224 0.9921848293353871 1.0206580222924826 1.0629763382126505 1.207516888708099 1.0 18.330236366849974 2.500556886796531 0.7836773768010583 1.096189343278655 0.928300310259749 0.5453979748267024 0.05585797326125848 0.4736496392438746 0.5908445020239249 0.04003264068922547 0.03032984617628168 316.633518403438 -2.500556886796531 -0.1678890330189059 TDCSSGDASRPSSDNADS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDCSSGDASRPSSDNADSPK 20 1 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 TDCSSGDASRPSSDNADS(1)PK;TDCSSGDASRPSSDNADS(1)PK 165.32 1.0199e-11 949380000.0 607010.0 465290.0 394100.0 396630.0 402550.0 643310.0 559980.0 512640.0 826170.0 500390.0 True False 603741.9256051506 480776.89637625526 449585.85442139185 446843.3173326098 453812.3563992178 598839.4938888509 532891.6280686621 550895.799933175 622571.473610822 468454.6817945679 1.288794730991525 1.026303962924403 0.9597211254226494 0.9538666912684728 0.9687433470848067 1.2783296168474645 1.137552144910256 1.1759852582170587 1.328989756759095 1.0 18.837549963062838 2.7447461158624766 24.972478433506225 1.1893812056063493 1.029565630142675 0.2593662292687412 0.12151198500658504 642.4883740151452 2593896.3129356657 0.037083073008691986 0.03844133893623186 555.5793762652403 -2.7447461158624766 -0.1598155754636743 TDDCHPWVLPVVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDDCHPWVLPVVK 13 0 P17174;P17174-2 P17174 GOT1 Aspartate aminotransferase, cytoplasmic 0 ; 144.57 4.1378e-05 1186120000.0 1073830.0 1043380.0 1003060.0 900090.0 824260.0 1034580.0 1057460.0 940830.0 1608530.0 1074250.0 False True 1068048.6185937293 1078108.2725634703 1144282.129246186 1014041.3017116932 929224.6252282173 963061.9197393605 1006306.6199105111 1011039.5120379386 1212129.3346977185 1005690.4452883044 1.0620053353371062 1.0720080692965177 1.1378074979305894 1.008303605212233 0.9239668424629744 0.9576126771924104 1.000612688153789 1.0053188004069193 1.2052708071122558 1.0 19.93975487668255 3.710922732749443 22.42904610332708 1.007655802548332 1.088747057731888 0.1853710134572829 0.0721638321605655 312.7212751769507 253783.006603716 0.019631752442547147 0.03042683531252484 5139.522039398235 -3.710922732749443 0.08109125518355609 TDDEVVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDDEVVQR 8 0 P14625;Q96GW1;A0A1W2PRR1;F8VPC7 P14625 HSP90B1 Endoplasmin 0 ; 234.63 3.3636e-08 656650000.0 678200.0 787430.0 681760.0 684770.0 713710.0 784250.0 806940.0 737370.0 965800.0 730560.0 False True 674548.6465551043 813639.1315385127 777745.88203585 771461.8117889493 804596.7380094039 730036.6434259244 767905.229389847 792396.293688991 727791.531056964 683935.0353361162 0.9862759059032573 1.1896438835578207 1.1371633881186258 1.1279752782511259 1.1764227542664036 1.0674064139251935 1.1227751024809896 1.1585841530980674 1.0641237741232172 1.0 19.383499769358586 0.9982012733721238 4.937730942294463 1.0001624769380042 1.1252925926184887 0.3198237007168845 0.055435823705903095 0.15588049145044136 13.0369038639906 0.04909385042087629 0.012423801465317892 9.958668439783683 -0.9982012733721238 0.1251301156804845 TDDEVVQREEEAIQLDGLNASQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDDEVVQREEEAIQLDGLNASQIR 24 1 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 ; 331.89 6.7498e-87 403180000.0 144895.0 205575.0 191730.0 222350.0 194811.0 212348.0 234190.0 195754.0 311750.0 246020.0 False True 144114.90141934782 212417.4396022885 218723.9174529652 250499.48720194076 219619.02611473846 197668.88257342484 222861.335007322 210362.15749867057 234923.38973597882 230318.79297168134 0.6257192457459055 0.922275759010278 0.9496572755999907 1.0876207015931207 0.9535436656345344 0.8582403546971048 0.9676211486342919 0.9133521185330955 1.0199922755103343 1.0 17.813272607759878 4.7514795079846905 3.1658107276229943 0.9621748467713246 0.570352163962193 0.7542913268266601 0.05828767723762977 0.185458795560878 2.8248370022552654 0.01462630627933301 0.18298618736501826 56426.03163145763 -4.7514795079846905 -0.3918226828091316 TDDIPVWDQEFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDDIPVWDQEFLK 13 0 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2;E5RGM3 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ; 208.72 1.0152e-07 124382000.0 277820.0 233110.0 218990.0 205675.0 209084.0 284010.0 261710.0 257300.0 369390.0 271890.0 False True 276324.2479887037 240868.92543202924 249821.8885047978 231713.43391166712 235709.60806203977 264377.0571876274 249050.08747071266 276501.03254292614 278358.78407240775 254537.74742325954 1.0855924152153997 0.9462994305182523 0.9814728504270922 0.9103303390453955 0.9260300699922857 1.0386556016306945 0.9784406831281425 1.08628694699315 1.0935854775580192 1.0 17.957520095304137 2.01074445256362 1.8215835115659138 1.0664813533455502 0.9709655378431632 0.27122606217627554 0.05533152273241641 0.39705854336272367 2.4634188625975812 0.03287102175499043 0.01674353051966223 102.50485899595404 -2.01074445256362 -0.09551581550238697 TDDVHAK ddPTM_BT-474_Trastuzumab_2h_R1 4 TDDVHAK 7 0 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ;;; 105.95 0.0078123 1051930000.0 5145860.0 4287020.0 3611930.0 3385730.0 3598530.0 2804920.0 4445810.0 4465160.0 6649250.0 5161410.0 False True 5118155.261518795 4429710.8691416895 4120458.3485416383 3814363.0708532846 4056781.4653416374 2611022.4824714637 4230749.185656529 4798372.912823061 5010631.432885182 4832004.394894586 1.0592199102564044 0.9167439652625413 0.8527430879192173 0.7893956129020653 0.8395649369913579 0.5403601216154161 0.8755681576214349 0.9930398486170544 1.0369674825170545 1.0 22.204190336174612 1.754931552049851 3.956300933387731 1.0140916283994612 0.8275602124209019 0.2950282548808485 0.12172413666571492 0.26319224987857454 8.632669422655853 0.06850871484311408 0.03458671454578067 56.87632825741209 -1.754931552049851 -0.18653141597855927 TDDYLDQPCLETVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDDYLDQPCLETVNR 15 0 P31150 P31150 GDI1 Rab GDP dissociation inhibitor alpha 0 286.61 6.8349e-34 110900000.0 106660.0 101420.0 96331.0 106770.0 102160.0 118420.0 109110.0 101060.0 135130.0 115430.0 False True 106085.75441103992 104795.70339031541 109893.5674759379 120287.0710526252 115169.47045023984 110233.90413069571 103831.93245932324 108601.6103722818 101829.02214923121 108063.15857540505 0.981701403230914 0.969763467696443 1.0169383250005193 1.1131182230685073 1.0657607270462681 1.0200877485343531 0.9608448783853629 1.0049827508650973 0.9423102516310058 1.0 16.721515230628956 -0.5998456199189944 7.702209962188837 1.0000008445666568 1.0101643335778019 0.0014975819235392152 0.04831213689902149 0.0 0.0 0.050268478859144684 0.011848394093744608 0.25127794987226004 0.5998456199189944 0.010163489011145055 TDDYLDQPCYETINR ddPTM_BT-474_Trastuzumab_2h_R1 6 TDDYLDQPCYETINR 15 0 P50395;P50395-2;Q5SX87;Q5SX91 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;;;;; 372.71 2.774599999999999e-97 3053520000.0 2193510.0 2197900.0 2098970.0 2051260.0 1959260.0 2383890.0 2338750.0 2236350.0 2761180.0 2261550.0 False True 2181700.38588187 2271055.7728413935 2394486.731425703 2310949.3056795737 2208760.1475561573 2219097.29537345 2225615.7276073853 2403237.7929551997 2080724.186916406 2117215.9427896314 1.030457187568347 1.072661379003723 1.1309600891587568 1.0915038277270293 1.0432380103117436 1.0481204352020796 1.0511992105419945 1.1350933763462538 0.9827642730551405 1.0 21.013736992048813 3.246437523739125 24.667317742046166 1.056540845434699 1.0843120686706698 0.1052802745506577 0.045111638381116814 440.76372566139605 1380285.1580062213 0.012959339663145334 0.017213008318324452 1763.75201831529 -3.246437523739125 0.02777122323597081 TDEDEKTILNLENSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDEDEKTILNLENSNK 16 1 Q8IX12-2;Q8IX12 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 124.25 7.6145e-05 191200000.0 88728.0 86144.0 64797.0 71928.0 79899.0 96599.0 97729.0 88638.0 165150.0 95462.0 False True 88250.29830660757 89011.25096485243 73919.85437437949 81034.07742505605 90073.66405152429 89921.33849958675 93001.47490896513 95252.61765464411 124450.99539662186 89369.53343086991 0.9874763235154618 0.9959909999273452 0.8271258843659375 0.9067304518014342 1.0078788664729803 1.0061744203816805 1.0406395931439503 1.06582874496402 1.3925438638760328 1.0 16.44749547203834 1.8764610961039363 1.404269905780933 1.1814652004926036 0.945297282533987 0.42412575770787575 0.10559543938582848 0.37801498617330687 1.3916879607427215 0.0764856219482944 0.03284946767693948 75.24213256050304 -1.8764610961039363 -0.23616791795861658 TDEEEKEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDEEEKEDR 9 1 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;H3BN59;H3BTB3;H3BMQ5 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 ; 164.43 5.679e-05 694910000.0 2062800.0 1448860.0 1233330.0 1064850.0 1150830.0 1538460.0 1667230.0 1628210.0 2556600.0 1631730.0 False True 2051694.113998627 1497084.4292456366 1406972.1437034665 1199659.9008184697 1297381.3789961787 1432109.8813452965 1586579.715462901 1749715.2980828544 1926560.1866848557 1527591.5944056627 1.3430907328322108 0.9800292399671815 0.9210394642495232 0.7853276394108591 0.8492985846134801 0.9374952615541753 1.0386151123593925 1.1454077807776972 1.261174906788106 1.0 20.542827455969228 1.9236026485323892 2.876689110182554 1.151104926111667 0.9545939285509389 0.18834221053300015 0.15103700801117798 0.402644363261949 6.01031543819216 0.08197834093908746 0.04408836170211612 83.86922859733177 -1.9236026485323892 -0.1965109975607281 TDEERPPVEHS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TDEERPPVEHSPEK 14 1 Q15170-2 Q15170-2 TCEAL1 Transcription elongation factor A protein-like 1 1 TDEERPPVEHS(1)PEK;TDEERPPVEHS(1)PEK;TDEERPPVEHS(1)PEK 133.95 2.5122e-05 2094910000.0 971881.0 651686.0 686021.0 607935.0 658750.0 849066.0 903640.0 847496.0 1166200.0 870200.0 True False 966648.5006821312 673376.9745574935 782606.7937985747 684899.5086670208 742637.9077828453 790372.0659063776 859927.4809599748 910740.4550174898 878805.636279385 814663.0909842977 1.186562287379683 0.8265711089769655 0.9606508536590362 0.8407150345298042 0.9115889942743943 0.9701827352352849 1.055562097358538 1.1179350888685886 1.078735057479514 1.0 19.635844021561777 2.2741731486125727 3.112321806326913 1.080303986055316 0.9342880251686372 0.24439249055804002 0.0965769608178379 0.28629334372716336 5.725443523186435 0.03631018166090431 0.027547679366779133 188.00662299056316 -2.2741731486125727 -0.1460159608866789 TDEFPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TDEFPR 6 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 ;; 158.16 0.022125 1010460000.0 842280.0 1020140.0 908320.0 899320.0 871610.0 1054600.0 991510.0 889470.0 1154670.0 999880.0 False True 837745.2580661057 1054094.7432123474 1036203.5607410285 1013173.8197906429 982604.3670627803 981697.9842613714 943546.8733639754 955846.7680371428 870117.0502853014 936066.802359665 0.8949631115581628 1.1260892284131367 1.1069760813319474 1.082373413133127 1.0497160721711336 1.0487477835841181 1.0079909585357096 1.0211309338474732 0.9295458914811255 1.0 19.836251965777556 1.8678279469635597 1.2618504934456796 0.9726830659786162 1.0603208245698243 0.19968780809766562 0.06218947338643044 0.6603145573756157 1.9509321666125836 0.047105394774158905 0.019942173559268986 73.76119549020262 -1.8678279469635597 0.08763775859120815 TDEFQLHTNVNDGTEFGGSIYQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDEFQLHTNVNDGTEFGGSIYQK 23 0 P21796 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 0 270.54 1.3561e-51 156000000.0 73519.0 67721.0 91576.0 57099.0 87216.0 148710.0 78770.0 67676.0 100930.0 98043.0 False True 73123.18187272883 69975.05254679102 104469.10480713897 64327.727545507616 98322.44063026736 138430.02772568603 74959.5941693785 72726.32677176483 76057.15389270996 91785.81180116464 0.7966719522090776 0.7623733033856886 1.1381835902203503 0.7008460924751704 1.071216113915983 1.5081854701635873 0.8166795357409189 0.7923482436404405 0.8286373721624032 1.0 16.48598353944039 4.277450838889143 24.998516004775368 0.9684809908234687 0.7795221079456292 0.11842262853414243 0.21851023449615964 391.1568627876471 251428.44484513265 0.05610444856234732 0.15364241371861798 18943.090709013963 -4.277450838889143 -0.18895888287783957 TDEGHPFK ddPTM_BT-474_Trastuzumab_2h_R1 5 TDEGHPFK 8 0 A8MT72;Q2NKQ5;Q16799-3;Q16799-2;Q16799 A8MT72 RTN1 Reticulon;Reticulon-1 0 ;;;; 90.657 0.013041 6717140000.0 8030300.0 9054720.0 9383030.0 7571020.0 10849300.0 12529500.0 9108120.0 8877660.0 11276900.0 10709200.0 False True 7987065.757050207 9356100.881506179 10704079.065241199 8529510.355725838 12230894.046160795 11663365.156270474 8667525.439202726 9540156.069044063 8497859.097718237 10025729.687392598 0.7966568026558685 0.9332089706419593 1.0676608485367034 0.8507620514097579 1.2199505100901735 1.1633432697609243 0.8645281400417348 0.9515672541062875 0.8476050484788489 1.0 23.25720390618576 4.651021451559673 3.269089608637089 0.9939117486571255 0.7858671016765794 0.19821960559866303 0.12091711592370138 0.467033750214465 8.063118626058007 0.030525175868849206 0.21264892663924206 44773.54190920684 -4.651021451559673 -0.20804464698054614 TDEGIAYR ddPTM_BT-474_Trastuzumab_2h_R1 7 TDEGIAYR 8 0 P32119 P32119 PRDX2 Peroxiredoxin-2 0 ;;;;;; 182.26 0.00053387 21110890000.0 8987320.0 9622570.0 8947490.0 9392650.0 9267690.0 10125720.0 10240520.0 9110230.0 11480490.0 9400900.0 False True 8938933.267705128 9942851.425483603 10207218.819022734 10581758.526949888 10447875.387597723 9425752.809781011 9745146.925014643 9790081.62341059 8651277.070184465 8800926.513484577 1.0156809347298947 1.1297505336795388 1.1597891203140338 1.2023459701358443 1.18713357867376 1.0709955134086269 1.1072864783137724 1.112392156486076 0.9829961717018292 1.0 23.069223980125024 1.2848756249695485 4.212973919553276 0.9890757988888562 1.127827941772504 0.5089253389116437 0.05162627000331455 0.1682203964527667 5.565646263556487 0.04352757432956782 0.013734939100799542 19.269729797569294 -1.2848756249695485 0.13875214288364768 TDEVPAGGS(ph)RSEAEDEDDEDYVPYVPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 Q9UJV9;D6RGI7;A0A499FJW5;D6RD33 Q9UJV9 DDX41 Probable ATP-dependent RNA helicase DDX41 1 T(0.003)DEVPAGGS(0.499)RS(0.499)EAEDEDDEDYVPYVPLR 84.962 0.0023576 40258000.0 21614.0 24754.0 25376.0 25801.0 26759.0 27587.0 29875.0 25095.0 31680.0 28109.0 True False 21497.63262554116 25577.921925890994 28948.72022785399 29067.40395456386 30166.600036980926 25679.975622812846 28429.83211641716 26967.716329827963 23872.888490251185 26315.05955467437 0.81693269896942 0.9719879931393718 1.100081881544205 1.1045919882556596 1.1463625979756675 0.9758661411902937 1.0803635863847831 1.0248016453771491 0.9071949254247695 1.0 14.68360103940526 4.638790321848383 3.0298844720656946 1.0473405722101865 0.8029653660525912 0.5068306335990957 0.06710232541724988 0.24044145898934088 3.491392653558147 0.016685970364944437 0.12285193450612196 43530.16585252352 -4.638790321848383 -0.24437520615759534 TDFEEFFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDFEEFFLR 9 0 B1AKV2;B1AKV6;B1AKV3;Q9NVA1-5;Q9NVA1-2;Q9NVA1 B1AKV2 UQCC1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 0 ;;; 238.31 6.4317e-10 122803000.0 148533.0 163071.0 167364.0 137151.0 164987.0 253122.0 147002.0 123537.0 203860.0 167204.0 False True 147733.31483156772 168498.7196564987 190927.3964460339 154514.3025375913 185997.11649543588 235624.27192509643 139890.95165782608 132755.95824817516 153621.4345840469 156532.89756945363 0.9437844512270557 1.076442858164916 1.2197269673700344 0.9871043399617216 1.1882302019798041 1.5052699821170177 0.8936840359436679 0.8481026053278758 0.9814003124543521 1.0 17.256106365924715 TDGALLVNAMFFKPHWDEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TDGALLVNAMFFKPHWDEK 19 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5 P50454 SERPINH1 Serpin H1 0 ;; 234.11 2.3857e-24 3173610000.0 3992200.0 4118340.0 3653050.0 3455130.0 3565940.0 4736830.0 5038080.0 4289740.0 7292290.0 4187990.0 False True 3970706.438775115 4255416.457310902 4167367.6871201876 3892549.1037375364 4020041.3220177023 4409384.091398438 4794368.823065406 4609862.181658352 5495202.841179734 3920708.8926813714 1.0127521699422959 1.0853691446601188 1.0629117848813627 0.9928176792221428 1.0253353238037515 1.1246395006855157 1.222832134264 1.175772623737354 1.4015839970770099 1.0 21.90268309700474 2.4780407041257257 2.9262925346477475 1.2110563611188332 1.0380656377738624 0.40168950918421387 0.09396481537277888 0.24388411724721218 4.274788507482938 0.032566538605678236 0.02791941605486466 300.6358059470893 -2.4780407041257257 -0.1729907233449708 TDGCHAYLSK ddPTM_BT-474_Trastuzumab_2h_R1 5 TDGCHAYLSK 10 0 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 ;;;; 140.07 3.9934e-05 4255380000.0 9445150.0 9088290.0 9311140.0 8481530.0 8160790.0 10236600.0 10720550.0 9311640.0 13736590.0 10190490.0 False True 9394298.361854812 9390788.23866267 10622067.578120282 9555290.82836913 9200018.233708043 9528967.936364444 10201956.040021973 10006521.86034984 10351391.455375617 9540124.203682575 0.9847144713512772 0.9843465386999615 1.1134097786714419 1.0015897722464346 0.9643499431754516 0.998830595170467 1.0693735031336304 1.048888006771152 1.0850373888612357 1.0 23.185576618245786 2.241704909812726 24.966368337527733 1.0547716780223364 1.0093372395486537 0.19112513412568832 0.04291848348216092 133.42862125351448 1059463.2736478401 0.01568172720072331 0.012611998437619397 174.46363215915233 -2.241704909812726 -0.04543443847368267 TDGFAEAIHS(ph)PQVAGVPR ddPTM_BT-474_Trastuzumab_2h_R1 6 TDGFAEAIHSPQVAGVPR 18 0 P12270 P12270 TPR Nucleoprotein TPR 1 TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR 257.96 7.8165000000000015e-31 6843550000.0 3542270.0 2923450.0 2555820.0 3206520.0 2518960.0 3975010.0 1932590.0 2810290.0 5713150.0 3057590.0 True False 3523198.8119031982 3020755.2659871555 2915657.2404143163 3612465.103228101 2839734.6249543517 3700226.914867048 1839103.238489262 3020008.110163466 4305220.734787829 2862451.988465502 1.23083245626485 1.0553033826102762 1.0185872993374945 1.2620177099161285 0.9920636700274129 1.29267737232884 0.6424922569531604 1.05504236309739 1.5040324701116696 1.0 21.448820064600614 TDGFGIDTCR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDGFGIDTCR 10 0 A0A0C4DGQ5;K7ELJ7;P04632;K7EKD8;U3KQE2;K7EIV0;A0A075B7C0;U3KPR7;K7EM73 A0A0C4DGQ5 CAPNS1 Calpain small subunit 1 0 ;;; 190.62 2.0504e-06 1059730000.0 2056140.0 2150500.0 1993760.0 2141280.0 2078160.0 2230010.0 2142000.0 1887300.0 2532210.0 2239440.0 False True 2045069.9706986288 2222078.092495298 2274464.0779274143 2412365.8284496176 2342801.3577806433 2075854.657578893 2038383.2767653742 2028139.909515217 1908180.775375597 2096517.021918954 0.9754607042621407 1.0598903177334649 1.0848774677944586 1.1506540625372863 1.1174730914592164 0.9901444328264272 0.9722712744300213 0.967385376942396 0.9101670796972724 1.0 20.999563113001617 2.5903194106152814 4.510176821668641 0.9629570924715147 1.0807397920072013 0.5793300367568253 0.047073701099452 0.1726272153766078 5.659869089545411 0.01667829430449078 0.015545467689427222 389.3313813204875 -2.5903194106152814 0.11778269953568654 TDGS(ph)IS(ph)GDRQPVTVADYISR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 TDGS(1)IS(1)GDRQPVTVADYISR;T(0.045)DGS(0.951)IS(0.79)GDRQPVT(0.214)VADYISR;TDGS(1)IS(1)GDRQPVTVADYISR;T(0.009)DGS(0.991)IS(1)GDRQPVTVADYISR 203.47 6.0238e-22 3369330000.0 2444810.0 2151890.0 1916620.0 2066810.0 2230670.0 2740680.0 2479710.0 2300890.0 3111150.0 2602160.0 True False 2431647.4146039253 2223514.357805028 2186463.4364403156 2328467.9340851963 2514732.6022830536 2551223.242466772 2359756.953887897 2472594.0954826777 2344448.769774149 2436087.920978742 0.9981771978192672 0.9127397819499434 0.8975305930509538 0.9558226179085082 1.0322831867548994 1.04726238347004 0.968666579546038 1.0149855734637314 0.9623826585176058 1.0 21.216134771891507 3.4131315195784024 5.808650222366252 1.004885873284933 0.9326249632669471 0.45544942222311247 0.034256769191228845 0.16572677871814595 10.695281347258915 0.009525177149232367 0.013033007946507526 2588.996835357995 -3.4131315195784024 -0.07226091001798596 TDGS(ph)ISGDRQPVT(ph)VADYISR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 TDGS(0.94)IS(0.082)GDRQPVT(0.976)VADYIS(0.001)R 178.1 1.5824000000000002e-15 472160000.0 976730.0 832680.0 769270.0 788570.0 868800.0 1067600.0 920900.0 885620.0 1272300.0 1078000.0 True False 971471.394204904 860395.2504343104 877576.5293852938 888402.8811460953 979436.5302189543 993799.324860079 876352.54882037 951709.4614872374 958758.7129465465 1009201.1170777673 0.9626142676277321 0.8525508304287874 0.8695754637355096 0.8803031091746568 0.9705067836775696 0.9847386294396051 0.8683626424809435 0.9430325089641179 0.9500174907878806 1.0 19.944782277661115 3.2500814471069606 24.99765881078559 0.945219910879352 0.8869469369251275 0.3202546686184511 0.0428851994452986 279.33794271439 606098.0250570137 0.011854989063893222 0.01591607956394991 1778.612937867078 -3.2500814471069606 -0.05827297395422448 TDGS(ph)ISGDRQPVTVADYISR ddPTM_BT-474_Trastuzumab_2h_R1 6 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 TDGS(0.999)ISGDRQPVTVADYISR;TDGS(0.998)IS(0.001)GDRQPVTVADYISR;T(0.001)DGS(0.992)IS(0.007)GDRQPVTVADYISR;T(0.001)DGS(0.879)IS(0.115)GDRQPVTVADYIS(0.006)R;TDGS(0.999)IS(0.001)GDRQPVTVADYISR;T(0.001)DGS(0.999)IS(0.001)GDRQPVTVADYISR 275.69 9.7252e-45 2194200000.0 1282390.0 1148590.0 1115128.0 1014521.0 1211860.0 1385800.0 1255680.0 1271250.0 1639380.0 1404990.0 True False 1275485.7547269233 1186820.1238126827 1272128.3295336685 1142959.254578819 1366183.1877430284 1290002.9078223114 1194937.9612365777 1366117.1302767016 1235376.7655665393 1315322.3353275438 0.9697134462552099 0.9023036345818143 0.9671608968891119 0.8689575352601288 1.0386679759397677 0.9807504010042319 0.9084753821495871 1.0386177544354622 0.939219788477859 1.0 20.32698496168825 3.235511923490035 24.999990871661225 0.9844182547061195 0.9281336532758113 0.2689812991388786 0.04622564755647554 107.00289774451755 877450.298499789 0.012570846251992713 0.01564367281799762 1719.934561136123 -3.235511923490035 -0.05628460143030822 TDHGAEIVYKS(ph)PVVS(ph)GDT(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDHGAEIVYKSPVVSGDTSPR 21 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 3 TDHGAEIVYKS(1)PVVS(0.998)GDT(0.764)S(0.238)PR 146.8 1.0381e-07 162870000.0 165810.0 120770.0 124500.0 116030.0 107490.0 151650.0 148540.0 108020.0 190690.0 158040.0 True False 164917.2973832228 124789.7564429932 142028.51782660058 130719.38610317603 121178.21435685473 141166.79244570166 141354.5527220958 116081.00091444576 143697.0046150885 147953.75189514863 1.1146543786202585 0.8434375934679155 0.9599521202223575 0.8835151824727893 0.819027654281663 0.9541278314168287 0.9553968784939667 0.7845762572936282 0.9712292035481682 1.0 17.174786756111555 4.747666160408837 24.429606153874285 0.8977925561276358 1.11465453552128 0.43696328570173826 0.0695522728729102 760.4209881234686 2040101.2366481528 0.01589545741218672 0.19378191682669943 55932.74844837837 -4.747666160408837 0.21686197939364427 TDHGAEIVYKS(ph)PVVS(ph)GDTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDHGAEIVYKSPVVSGDTSPR 21 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 3 TDHGAEIVY(0.002)KS(0.997)PVVS(0.998)GDT(0.105)S(0.898)PR;TDHGAEIVYKS(1)PVVS(0.993)GDT(0.368)S(0.638)PR 118.76 0.00033704 1126130000.0 1034310.0 875760.0 703380.0 678880.0 775140.0 1040610.0 916820.0 667030.0 1209820.0 797910.0 True False 1028741.389882643 904909.1421918996 802409.7901114404 764826.1383928647 873849.4843852688 968675.0800324539 872469.914007485 716807.1657097084 911676.0717574388 746986.7006748796 1.3771883608546265 1.2114126548362132 1.0741955504515512 1.0238818679125983 1.169832720710787 1.2967768758898728 1.167985873402077 0.9595982968131762 1.2204716241049103 1.0 19.510723031987872 4.60826097205512 2.8009511799404407 1.1131093437445194 1.3917323308309 0.3984807563372038 0.0990242674772274 0.34864938097847575 4.320728038311752 0.025849390616585474 0.18984861355585922 40575.22829578151 -4.60826097205512 0.27862298708638056 TDHGAEIVYKS(ph)PVVSGDT(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDHGAEIVYKSPVVSGDTSPR 21 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;A0A0G2JS76;A0A0G2JMX7;P10636-9;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 2 TDHGAEIVYKS(0.999)PVVS(0.001)GDT(0.569)S(0.43)PR 162.52 2.8211e-10 718590000.0 308290.0 286980.0 252480.0 253040.0 258350.0 382230.0 332100.0 225960.0 397160.0 341520.0 True False 306630.20089423883 296531.9558169266 288026.98940449936 285074.8380552243 291249.3411395802 355807.3397726377 316035.0542547999 242822.28260163116 299285.2396713435 319723.9012100175 0.9590468517798493 0.9274625847322663 0.9008616131432183 0.8916281734844926 0.9109401581718685 1.1128581204785126 0.9884623985217967 0.7594749147081379 0.9360740268046196 1.0 18.286467072381523 -0.6529458045431616 5.90411258362316 1.0000000008398604 0.9245988350004408 0.050267439076111975 0.08363590675736933 1.3068345056430238e-09 2.2134309010467171e-10 0.08770017845628764 0.020671130145225206 0.22235873540286946 0.6529458045431616 -0.07540116583941958 TDICQGALGDCWLLAAIASLTLNDTLLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDICQGALGDCWLLAAIASLTLNDTLLHR 29 0 P07384;E9PRM1;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3 P07384 CAPN1 Calpain-1 catalytic subunit 0 170.1 2.785e-12 463040000.0 428650.0 500900.0 449290.0 495380.0 479710.0 548520.0 510240.0 443840.0 593840.0 485560.0 False True 426342.1960274917 517572.1536995558 512546.1267013125 558095.0572075439 540798.225036067 510602.10347719304 485557.7418939147 476961.59457385354 447496.0890483198 454571.14509116905 0.9378998219123308 1.1385943856945675 1.1275377512105744 1.2277397349882646 1.1896888548163438 1.1232611418280551 1.068166660240898 1.0492562049405794 0.9844357563843383 1.0 18.79414658324042 1.7695307389354642 1.5592784156881199 0.9959807296844262 1.1319705477154132 0.33723884672169424 0.07190712520526794 0.4288969270772092 2.012096702368869 0.05614646305933278 0.02257556831014721 58.82077454342972 -1.7695307389354642 0.13598981803098698 TDIELEIYGMEGIPEKDMDER ddPTM_BT-474_Trastuzumab_2h_R1 4 TDIELEIYGMEGIPEKDMDER 21 1 J3QRS9;O43670-2;O43670;O43670-4;X6R4W8;J3QS27;J3KTL1;J3KRB6;J3KRW6;H0Y3M2 J3QRS9 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 ;;; 254.55 1.9681e-36 637095000.0 739062.0 625524.0 586791.0 562591.0 552387.0 723939.0 669452.0 700465.0 959132.0 724940.0 False True 735082.9723095067 646344.1882027566 669406.0723211959 633814.962916245 622730.2101957394 673894.800899102 637068.0492050115 752737.2551891984 722766.7703103411 678673.7085476404 1.0831169132550929 0.9523636764800144 0.9863444890973053 0.9339023376529599 0.9175693744323471 0.9929584606146521 0.9386956370659106 1.1091298302980586 1.0649694561721859 1.0 19.372358599418472 1.7433243616806775 24.99999999999999 1.0655416692675819 0.969153474828529 0.37759324548928574 0.05015873068702032 0.8000314474961652 4216.401517675947 0.022424040481598028 0.012435261643052732 55.37635443889371 -1.7433243616806775 -0.09638819443905289 TDKLDEALEDYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDKLDEALEDYK 12 1 Q99614;H0YB37 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 ; 119.87 0.00042976 708150000.0 1690760.0 1154290.0 953690.0 910850.0 979140.0 1564260.0 1386230.0 1429050.0 2563800.0 1345900.0 False True 1681657.1360210946 1192709.8448669594 1087961.2623779194 1026163.5166084449 1103827.675182535 1456126.3880719633 1319172.758987146 1535692.9675688657 1931985.8431599103 1260003.5097170381 1.3346448030122933 0.9465924782501669 0.8634589141916321 0.8144132208321331 0.8760512702305283 1.1556526444906245 1.0469595908374856 1.2188005475585857 1.5333178267049279 1.0 20.264996321655964 2.004576853733979 1.537144910567001 1.2767696392267875 0.9647082906722618 0.2640253587803033 0.18788183207975065 0.48054154810962074 2.1193679638261886 0.1237641391934785 0.059863630072790115 101.05943217627888 -2.004576853733979 -0.3120613485545257 TDLADKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDLADKR 7 1 P20340-2;P20340;P20340-4;J3KR73;Q9NRW1-2;Q9NRW1;C9JU14;Q53S08;Q9H0N0 P20340-2 RAB6A;RAB6B;RAB6C Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-6C 0 ;;; 121.52 0.0071033 4843400000.0 5864100.0 5978100.0 5607300.0 4943900.0 6235900.0 7309700.0 6302300.0 6373800.0 9426600.0 6997700.0 False True 5832528.337162764 6177077.444662244 6396759.100474681 5569797.233090519 7030004.901924938 6804397.644182952 5997433.671876014 6849445.321500599 7103540.739968485 6551100.79496762 0.8903127153291789 0.9429067935280907 0.9764403419633689 0.8502078364248475 1.0731028451470628 1.0386647766753807 0.9154848718681114 1.045541129020967 1.0843278041799074 1.0 22.64330591536457 3.231377323404143 24.999592604908763 1.0225958700782576 0.9213535829020411 0.5068240470580321 0.05352961043911982 150.61955204170914 524191.87756432826 0.01560619827075085 0.01901965970709538 1703.638019086751 -3.231377323404143 -0.10124228717621653 TDLCDHALHISHDEL ddPTM_BT-474_Trastuzumab_2h_R1 4 TDLCDHALHISHDEL 15 0 Q9Y2B0;H0YI18 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ;;; 258.23 4.7173e-25 1985380000.0 716130.0 1366630.0 1451950.0 1512750.0 1482930.0 1443510.0 1594490.0 15953.1 1447160.0 413922.0 False True 712274.4356495228 1412117.4534047202 1656371.939424359 1704263.994894249 1671772.3454852616 1343723.5513570376 1517358.4271566863 17143.601330200385 1090526.8089505015 387505.14358354727 1.8381031773219658 3.6441257020379743 4.274451492712226 4.398042253410256 4.314193948563221 3.4676276524503136 3.915711706751937 0.044240964575749366 2.814225377412005 1.0 18.56385593469008 1.7542521556050337 24.99999999897833 1.2599010315449364 3.7559713834669446 0.5809898771466191 0.9355949686713309 3.5944688505276097 5733.7568611747565 0.4211066147908477 0.23352685242606766 56.787422301311544 -1.7542521556050337 2.4960703519220084 TDLEELSLGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDLEELSLGPR 11 0 A0A087X1E4;P53365;P53365-2;P53365-3 A0A087X1E4 ARFIP2 Arfaptin-2 0 105.98 0.005568600000000001 24789000.0 46168.0 46396.0 42529.0 45328.0 43818.0 47233.0 42452.0 43454.0 42276.0 39571.0 False True 45919.436617747 47940.26281302573 48516.71353130521 51066.52015241543 49397.96257036622 43967.89388452244 40398.43457761146 46696.758134941025 31857.646269376855 37045.54490156244 1.2395400510308134 1.29408982754641 1.3096504224792482 1.3784793903857961 1.3334386820770667 1.1868604983771758 1.0905072306253918 1.2605229119729193 0.8599589060986715 1.0 15.177012433959543 1.6695075028969766 0.8518677203019165 0.9600425371770113 1.3084921661399835 0.6539562571061066 0.09176249883844098 0.3612552165607604 0.5076224216088328 0.08303093770456144 0.0351354868632691 46.720502256356895 -1.6695075028969766 0.34844962896297227 TDLEKDIISDTSGDFR ddPTM_BT-474_Trastuzumab_2h_R1 5 TDLEKDIISDTSGDFR 16 1 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YN52 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ;;;; 196.66 4.1334e-11 1822930000.0 2966750.0 3376980.0 3405160.0 2938980.0 2954720.0 5153600.0 4058270.0 4190540.0 7060950.0 4087530.0 False True 2950777.3476369116 3489380.737872478 3884576.929818697 3311054.566659594 3330986.078002476 4797343.762269488 3861955.9760030927 4503259.373930951 5320873.4843825465 3826660.335889504 0.7711103386841377 0.911860586409056 1.015135023452697 0.8652595934909237 0.8704681852114766 1.2536633359580238 1.0092236145922224 1.1768118878218052 1.3904744652874226 1.0 21.867654418730016 2.747314442339138 24.930265068275656 1.1636880591736676 0.8940975644043839 0.5785193820752244 0.11909422539672057 461.90569990686026 1315474.1616537615 0.03611638792566741 0.0377672140286152 558.874690463369 -2.747314442339138 -0.26959049476928365 TDLEKDIISDTSGDFRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDLEKDIISDTSGDFRK 17 2 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YN52 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 118.24 0.00010036 153150000.0 213140.0 256290.0 256680.0 223940.0 238460.0 373750.0 288790.0 254610.0 499290.0 320530.0 False True 211992.47792208017 264820.4577194235 292818.31289744476 252290.78103891478 268826.46753684635 347913.5422128648 274820.1244150665 273610.2910833828 376246.66964322934 300073.50098046113 0.7064685059807523 0.8825186391139114 0.9758219634212593 0.8407632803782376 0.8958687343550226 1.1594277437897413 0.9158426969296467 0.9118109069590872 1.2538483685293096 1.0 18.194956396865038 6.246677670537921 0.35311469261828554 1.0361189467672778 4.204923880226543e-13 0.41684086822682853 0.11340126214239618 20.589842373516205 0.8871633569824751 0.09817709683583556 11.258575344717668 1764727.5695729805 -6.246677670537921 -1.0361189467668572 TDLFYER ddPTM_BT-474_Trastuzumab_2h_R1 4 TDLFYER 7 0 Q7RTV0 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A 0 ;;; 157.21 0.0034697 1001920000.0 1013040.0 1171360.0 1214780.0 1050220.0 833470.0 1008860.0 1119960.0 907900.0 1615780.0 1095700.0 False True 1007585.905199325 1210348.0094979275 1385810.4649429575 1183177.744318518 939607.4641362707 939119.8828009936 1065783.2561373243 975652.108222786 1217592.6693427428 1025771.4879240345 0.9822713119453986 1.1799392201351206 1.350993355983771 1.153451580832144 0.9160007615710364 0.9155254302316327 1.0390065123512704 0.9511398198416681 1.1870018651102476 1.0 19.96827794553536 3.3448525877900748 6.5447590523784545 0.994929965405145 1.1843372046136265 0.3463194756555432 0.11053168609444779 0.2219112431678617 12.148132563544614 0.031011860304182043 0.042053828490434285 2212.3436482070556 -3.3448525877900748 0.18940723920848146 TDLKGDDLEEGVTSEEFDKFLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 TDLKGDDLEEGVTSEEFDKFLEER 24 2 Q6ZVM7-2;Q6ZVM7;Q6ZVM7-4;Q6ZVM7-3;Q6ZVM7-5;F5H3S6 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 0 ; 167.1 6.8382e-12 175886000.0 146891.0 123714.0 113632.0 106196.0 108618.0 161303.0 154276.0 129386.0 233608.0 140638.0 False True 146100.15517712428 127831.74570330771 129630.39789295007 119640.40271147867 122449.85847067508 150152.50327641942 146813.0804884479 139041.44032879532 176038.43858682425 131662.36243375042 1.1096577068533056 0.9709057572746336 0.984566853402598 0.908690991867012 0.9300293281027001 1.1404360403450367 1.1150725064827922 1.056045461729869 1.3370445078820676 1.0 17.006483463990328 2.730970094118907 24.502733153925043 1.1254732281333044 0.9764286389030272 0.3798650672413387 0.09499801118953977 477.024326995259 1539863.9304668924 0.029761672570111364 0.02856484071254549 538.2327180852305 -2.730970094118907 -0.1490445892302772 TDLLVNDNPDPAPLS(ph)PELQDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDLLVNDNPDPAPLSPELQDFK 22 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 TDLLVNDNPDPAPLS(1)PELQDFK;TDLLVNDNPDPAPLS(1)PELQDFK 200.0 1.0942e-22 110185000.0 242732.0 164164.0 143565.0 135383.0 129769.0 192501.0 181534.0 182146.0 214580.0 174281.0 True False 241425.1578820606 169628.09950076652 163777.70411064994 152522.47391886826 146294.31294887624 179193.85896861184 172752.50689277577 195738.65943864675 161699.6342246876 163158.2373705291 1.4796994731794564 1.039653910427731 1.00379672365983 0.9348131996087502 0.8966406802780345 1.0982826356579605 1.058803463906381 1.1996860384935892 0.9910601930411331 1.0 17.315912301055146 4.738447521635024 7.61988452763369 1.0347038294750486 1.4842196912315992 0.7405891159100415 0.08058930642557598 0.056731754162961126 33.91170925531032 0.02205613976991151 0.13159535387462545 54757.99296499263 -4.738447521635024 0.44951586175655067 TDLQGSAS(ph)PSKVEGVHTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 TDLQGSAS(0.981)PS(0.019)KVEGVHTPR;TDLQGSAS(0.996)PS(0.004)KVEGVHTPR 228.29 6.4718e-20 1422300000.0 1232970.0 917810.0 830420.0 829100.0 786090.0 1319190.0 1300970.0 981940.0 1746540.0 1326050.0 True False 1226331.8265158462 948358.7510221379 947335.9178599657 934063.9749904607 886193.9019795335 1227997.5003392366 1238037.110911974 1055217.3489902867 1316128.6194369735 1241420.3537114782 0.9878457549447117 0.7639304029346924 0.7631064812395839 0.7524155473993049 0.7138548190627589 0.989187503385045 0.9972747000728728 0.8500080942248934 1.0601796687980343 1.0 20.24356027426107 2.7283389609891335 24.876306598314926 0.9617156840053864 0.7901617464056565 0.527889965592899 0.08567680305431565 564.737346228846 1374391.1175224287 0.02782952862161587 0.026513444092324846 534.9817425336881 -2.7283389609891335 -0.17155393759972992 TDMDNQIVVSDYAQMDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDMDNQIVVSDYAQMDR 17 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 374.23 1.4693e-104 259790000.0 104524.0 113774.0 115259.0 115081.0 108039.0 112620.0 128751.0 98986.0 129171.0 120085.0 False True 103961.25439770803 117560.89881216451 131486.46535081277 129650.24280047925 121797.12625267702 104834.84447896409 122522.82225341673 106372.83796072326 97338.53785272216 112421.07249005917 0.924748822396271 1.04571942081908 1.169589138748338 1.153255701344991 1.0834012125568977 0.932519519311952 1.0898563724719028 0.9462001705252303 0.8658389009883295 1.0 16.778552957749145 2.0069549692940716 1.1435734740380592 0.9316318648354094 1.0749604966786352 0.2741248887540194 0.08348581916482298 0.6340028833821681 1.5320198841296804 0.06602057627198003 0.03086060211335033 101.61433265224133 -2.0069549692940716 0.14332863184322586 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK 35 0 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 162.55 8.360700000000002e-15 618850000.0 254290.0 156090.0 170860.0 140020.0 144390.0 201770.0 182610.0 200950.0 240170.0 178880.0 False True 252920.93089427523 161285.36129160257 194915.6028582569 157746.51764342593 162777.21063341975 187822.11481549087 173776.45666205656 215945.90940342427 180983.3216131197 167463.72525312705 1.5103027865406478 0.9631062550878665 1.1639273076222054 0.9419742538569876 0.972014747596093 1.1215689519123704 1.037696112393222 1.2895085731373452 1.0807314917875936 1.0 17.353489097977075 4.748209447854412 24.842928591272514 1.0791583514735203 1.510303039125224 0.6283734963970018 0.10246298032020366 877.3309831125581 2258820.8777220626 0.025978718278617325 0.34249667968724873 56002.76217436249 -4.748209447854412 0.43114468765170355 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR ddPTM_BT-474_Trastuzumab_2h_R1 3 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR 45 1 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;; 342.47 7.306899999999995e-135 1418690000.0 228142.0 198922.0 200114.0 192386.0 192740.0 237420.0 259261.0 193725.0 306053.0 235761.0 False True 226913.70882095917 205542.9985191116 228288.31177793068 216742.04787421928 217284.29654051733 221007.71422656404 246719.55495680094 208181.74321561755 230630.3390500896 220714.53113485296 1.0280868579618738 0.9312617409568208 1.0343148255990915 0.9820017139777418 0.9844585013197893 1.0013283361553207 1.1178219833929255 0.9432172052524349 1.0449259405996165 1.0 17.751822089582543 2.4654825252613293 24.999796862054822 1.022124965256031 0.9906867856351499 0.099782278868077 0.04831302272140373 583.1516580103829 1252589.1541180064 0.01614585802569993 0.013518640667397289 292.0670238621882 -2.4654825252613293 -0.031438179620881024 TDPSVRPMHER ddPTM_BT-474_Trastuzumab_2h_R1 2 TDPSVRPMHER 11 1 D6RDK6;D6RBN5;Q9NX40 D6RDK6 OCIAD1 OCIA domain-containing protein 1 0 ; 61.233 0.053242 191053000.0 415630.0 550380.0 589650.0 478090.0 547870.0 777670.0 523570.0 436570.0 611380.0 559640.0 False True 413392.2942608345 568699.0655882636 672667.594670323 538616.1449803273 617637.9970200954 723911.5033382716 498242.9188683699 469149.0702575413 460713.59107227786 523923.2960680903 0.7890320918409955 1.0854624519585288 1.2839047236847845 1.0280438931089781 1.1788710325639455 1.3817127598086236 0.9509844715964244 0.8954537310678576 0.87935313151718 1.0 18.99899608680585 2.0283982278894364 24.982918242559276 0.9157941263197371 1.1312525717320405 0.2826364579310199 0.15066400808917438 249.65631004046855 219630.37799647643 0.05707961548713362 0.04215538645904926 106.75745889214971 -2.0283982278894364 0.2154584454123034 TDPVPEEGEDVAATISATETLSEEEQEELRR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDPVPEEGEDVAATISATETLSEEEQEELRR 31 1 H0YC42;P55327-8;H0YC44;P55327-2;P55327-4;P55327-3;E5RFR7 H0YC42;P55327-2 TPD52 0 ; 162.44 2.8762e-12 255590000.0 10740.1 10312.7 9259.9 8430.5 2831.4 11279.800000000001 12357.9 7043.5 12058.7 9614.6 False True 10682.276494937283 10655.951985341204 10563.61343150634 9497.800435601364 3191.9620069773796 10500.053975793106 11760.101165237555 7569.121736168295 9086.994963301519 9000.98799652681 1.1867893279114723 1.1838647034584415 1.173605990318229 1.0551953229208013 0.35462351557507404 1.1665446037529144 1.3065344793010942 0.8409212121034906 1.0095552806878418 1.0 13.135867652710871 3.477856112711681 24.99999802351903 0.9447086066040227 1.1704539000070375 0.16869151987198183 0.23384188473156597 50.720076697721595 1725535.2620214792 0.06691158677810792 0.09169206543294861 3005.0805162638394 -3.477856112711681 0.22574529340301486 TDQDEEHCR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDQDEEHCR 9 0 Q16186;A0A087WX59;A0A087WUX6 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 0 ; 117.52 0.0011383 190584000.0 280540.0 237717.0 159432.0 185645.0 197236.0 227266.0 184547.0 188200.0 324990.0 196862.0 False True 279029.603810924 245629.2666420389 181878.63979221374 209147.63796538938 222352.83549063734 211555.63634661934 175619.75657199783 202244.4396602358 244900.56914288917 184298.09861796242 1.5140123848446947 1.3327824241486717 0.9868720358815852 1.1348334005275789 1.2064846960334616 1.1478991803662608 0.9529113858957698 1.097376702075885 1.3288285173823287 1.0 17.49168166136536 4.446167530729339 4.376183801940545 1.1081371552902668 1.482074189360286 0.6059033595253458 0.10652935766618211 0.1180240116060213 5.135954194084876 0.026091290592786188 0.0876282495652804 27936.2128332435 -4.446167530729339 0.3739370340700192 TDQVIQSLIALVNDPQPEHPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDQVIQSLIALVNDPQPEHPLR 22 0 P68036-2;P68036;P68036-3;A0A1B0GUS4 P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 0 ; 220.86 9.819299999999999e-26 2776900000.0 426050.0 439230.0 410960.0 380890.0 358090.0 444410.0 486700.0 394400.0 484020.0 466480.0 False True 423756.19413860457 453849.5050298585 468819.5958716457 429110.6349464689 403690.6389342834 413688.9827286135 463156.4616254478 423832.13072261977 364739.75653571245 436708.84702637914 0.9703403011503631 1.0392496239089106 1.0735289634361975 0.9826011949800246 0.9243930863390517 0.9472878453127029 1.0605612063487029 0.970514184927924 0.8352012078969414 1.0 18.736312232557037 3.4922844881652986 22.926968333582796 0.9618867466877083 1.0287280640032272 0.22505147236052192 0.05870160530131084 368.9967992433711 557924.9365985333 0.016135218961318875 0.0240597781931878 3106.5939216011666 -3.4922844881652986 0.0668413173155189 TDRDKYNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDRDKYNR 8 2 P61077-3;P61077-2;P61077;A0A087WY85;H9KV45;D6RAH7 P61077-3 UBE2D3 Ubiquitin-conjugating enzyme E2 D3 0 ; 111.06 0.0018595 91754000.0 108470.0 128260.0 120334.0 121927.0 124009.0 131167.0 152350.0 124270.0 226246.0 150221.0 False True 107886.00957214994 132529.05656519264 137275.9812381219 137362.94569854316 139800.81109107105 122099.73402390597 144980.2484664821 133543.65843027385 170490.7048410787 140633.76716933126 0.7671415744857982 0.942370095267518 0.9761238996949687 0.976742275083552 0.994077126034338 0.8682106472828163 1.0309063846090207 0.9495845920807874 1.2123027653507847 1.0 17.10158351179729 5.48799624029591 1.0798644522973184 0.9971874993747187 3.798657773271552e-15 0.42742840276837246 0.08172376528248756 7.2606323305649845 2.137096135157385 0.022845008878191516 12.23997366903094 307607.018496714 -5.48799624029591 -0.997187499374715 TDRLEVCR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDRLEVCR 8 1 H7C4T5;C9JP00;A0A0A0MQX8;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;C9JCX1;H7C4Y1;Q86VM6 H7C4T5 MBNL1 Muscleblind-like protein 1 0 90.629 0.013736000000000002 0.0 63254.0 77917.0 78973.0 75133.0 59390.0 61267.0 75395.0 67741.0 100810.0 68782.0 False True 62913.44749218005 80510.42024317881 90091.71195437864 84644.83009643987 66952.96446789108 57031.75649700495 71747.85581313043 72796.17740182816 75966.72628479231 64392.27387276716 0.9770341022044178 1.250311806075672 1.3991074788318714 1.3145184197670947 1.0397670472110303 0.885692538357849 1.1142308152511773 1.130511053945172 1.1797490865891014 1.0 15.974599976055146 3.2306072734657056 24.980780022997614 1.0651439801967197 1.2480239113784815 0.32007244595750994 0.12553714873266344 218.09904898574888 685030.1523793356 0.03834516830643879 0.04661240079534588 1700.6199655839355 -3.2306072734657056 0.1828799311817617 TDS(ph)IGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TDSIGEK 7 0 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;Q7Z3U7-3 A0A286YFF8 MON2 Protein MON2 homolog 1 TDS(1)IGEK;TDS(1)IGEK;T(0.018)DS(0.982)IGEK 136.99 0.0030698 1437570000.0 3859750.0 2249820.0 1984580.0 2047290.0 2095490.0 2348660.0 2804120.0 2524380.0 4399350.0 2841930.0 True False 3838969.534858536 2324703.8986550914 2263991.613721406 2306476.7040866255 2362338.230557686 2186302.662350948 2668474.002821349 2712762.0541419084 3315189.1407697736 2660555.5943013174 1.442920246839149 0.8737663304741342 0.8509469294949832 0.866915432636289 0.887911621022922 0.8217466558615882 1.0029762236643325 1.0196223901325019 1.2460514442436856 1.0 21.343296119353155 1.568066901452719 2.976475895532858 1.1242728189297966 0.9434161539753695 0.09826916412790987 0.17949566362914943 0.4332159268174638 8.710578536629539 0.12073142988318815 0.046838780139645694 36.98851548267441 -1.568066901452719 -0.1808566649544271 TDS(ph)PDMHEDT ddPTM_BT-474_Trastuzumab_2h_R1 7 TDSPDMHEDT 10 0 Q9BW61 Q9BW61 DDA1 DET1- and DDB1-associated protein 1 1 T(0.002)DS(0.998)PDMHEDT;TDS(1)PDMHEDT;T(0.002)DS(0.998)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT 251.58 4.1882e-15 3926330000.0 3568162.0 3379350.0 2982682.0 3172424.0 3013830.0 3631160.0 3560448.0 3150665.0 4376203.0 3213281.0 True False 3548951.4122520653 3491829.6218897854 3402617.6996632987 3574052.5531240427 3397623.38613006 3380146.456031212 3388215.5280078095 3385783.621052694 3297746.408765866 3008206.655551731 1.1797565189553632 1.160767866610997 1.1311116852240424 1.1881007398637413 1.1294514556902695 1.1236417051976983 1.1263240581410061 1.1255156339755228 1.096249954330691 1.0 21.520472248939022 -4.999999999527495 0.13245369576318314 0.5036150479243802 1.1996534932091205 0.8896703664234897 0.01652803956252538 41.578818995864815 0.3452170094152155 5.410514492629206 0.11565579059913537 1.0000000010879822e-05 4.999999999527495 0.6960384452847403 TDS(ph)REDEIS(ph)PPPPNPVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDSREDEISPPPPNPVVK 18 1 P10644;P10644-2;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EMU2;K7EMZ6 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 2 T(0.039)DS(0.961)REDEIS(1)PPPPNPVVK 101.75 0.00034589 231910000.0 237690.0 176440.0 141120.0 157960.0 145320.0 182030.0 178230.0 161640.0 268990.0 203760.0 True False 236410.3034498416 182312.69873976766 160988.46936297085 177957.71980399612 163825.64062087765 169446.69455252922 169608.3339952815 173702.39759128884 202701.01878133422 190755.86235228754 1.2393344064741745 0.9557383793692953 0.8439503110298003 0.9329082609023264 0.8588236219882186 0.8882908890086713 0.889138251919352 0.9106005731582477 1.0626201275376082 1.0 17.54136786940808 4.727015612452778 3.942617098023959 0.9141911772219801 1.2660677441182533 0.6918168028277019 0.06260674141496825 0.11572992681374732 3.704994790887067 0.014456807945152686 0.11491982914326368 53335.406868895574 -4.727015612452778 0.3518765668962732 TDS(ph)SPNQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDSSPNQAR 9 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 TDS(0.5)S(0.5)PNQAR 67.726 0.063027 14735000.0 33601.0 26999.0 27207.0 24896.0 26459.0 20512.0 29796.0 28652.0 35218.0 30124.0 True False 33420.095949422066 27897.64539375984 31037.509112516676 28047.831047355627 29828.396815220214 19094.053720054286 28354.653648226475 30790.157731908002 26538.995797022293 28201.46052954605 1.1850484096172453 0.9892269715794362 1.100563890299205 0.9945524281613192 1.0576897882281544 0.6770590374228975 1.0054320987567267 1.0917930190051621 0.9410504030178852 1.0 14.78348226005188 7.999999926482062 0.6759613393332596 0.9733670957215924 21.921892097198647 0.23700719733597886 0.11181799736144976 418.3772882428211 2.427754774039314 0.044118745446332194 13188.586114386757 99999983.07187054 -7.999999926482062 20.948525001477055 TDS(ph)TSDGRPAWMR ddPTM_BT-474_Trastuzumab_2h_R1 9 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 TDS(0.961)T(0.038)SDGRPAWMR;T(0.002)DS(0.974)T(0.023)S(0.001)DGRPAWMR;TDS(0.988)T(0.012)SDGRPAWMR;TDS(0.732)T(0.134)S(0.134)DGRPAWMR;TDS(0.979)T(0.02)SDGRPAWMR;T(0.01)DS(0.946)T(0.041)S(0.002)DGRPAWMR;TDS(0.994)T(0.006)SDGRPAWMR;T(0.002)DS(0.988)T(0.009)SDGRPAWMR;T(0.05)DS(0.619)T(0.124)S(0.208)DGRPAWMR 228.9 4.037e-12 22902070000.0 6292350.0 4820570.0 4175660.0 4573070.0 4323180.0 5447940.0 4856000.0 4798020.0 7169000.0 5152790.0 True False 6258472.686745802 4981019.7583538955 4763556.632512642 5152020.19311257 4873711.347504587 5071336.730871321 4621096.728278552 5156072.616251884 5402296.009678366 4823934.530674536 1.2973792755580107 1.0325637146774034 0.9874836820902188 1.0680120470855887 1.010318717327843 1.0512863925958362 0.9579517920265762 1.0688521130345658 1.1198941393847974 1.0 22.201778896771103 4.73859298012396 24.02088517469879 1.0328013708015475 1.2973792753066593 0.7615816126371233 0.044389078209758064 0.69190968055095 509566.5975532502 0.010272076809572185 0.059243594535268174 54776.33616127572 -4.73859298012396 0.26457790450511176 TDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDSYSAGQSVEILDGVELGEPAHKK 25 1 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 T(0.145)DS(0.721)Y(0.058)S(0.076)AGQSVEILDGVELGEPAHKK;T(0.164)DS(0.79)Y(0.003)S(0.043)AGQSVEILDGVELGEPAHKK 172.94 2.4254e-12 340210000.0 454760.0 300380.0 267260.0 257350.0 319930.0 424330.0 394510.0 365620.0 629090.0 358970.0 True False 452311.6226885854 310377.9667164558 304887.884934436 289930.4836133103 360671.1891263241 394997.0658653777 375426.0441254476 392904.42098074086 474059.19887412037 336060.2272703214 1.3459242897099908 0.9235783991385355 0.9072417983255994 0.8627337009449052 1.0732337832891068 1.1753758219881476 1.1171391722694426 1.1691488283875227 1.4106376191098473 1.0 18.35836028421991 2.899187919214675 3.8325555365363306 1.1781540649613162 0.9937279139548977 0.19422625759814915 0.15625305040768495 0.3563738895717118 9.433227497211034 0.04850165521174897 0.05251515404925513 792.8443199926473 -2.899187919214675 -0.18442615100641857 TDSEKPFR ddPTM_BT-474_Trastuzumab_2h_R1 5 TDSEKPFR 8 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;;; 131.06 0.00093131 4565860000.0 4348970.0 5536530.0 4893120.0 4893420.0 5392550.0 5364120.0 5365120.0 5180450.0 5821690.0 5342930.0 False True 4325555.6287359875 5720810.054146937 5582028.7642385205 5512926.4702663375 6079259.278352017 4993311.010180269 5105588.648851281 5567041.4847920835 4387012.506149318 5001939.633087492 0.8647756562519727 1.1437183320454662 1.1159728372797182 1.1021577377301202 1.2153803772716745 0.9982749446134567 1.0207217646286968 1.1129765437324517 0.8770622654318992 1.0 22.254056215493428 1.2452543288203626 24.999974589032185 0.9385311188553818 1.0780620775109175 0.23958982776896065 0.0943958541392648 183.4108482273599 685030.2450730453 0.0637053159926843 0.022090981404044564 17.589533796923877 -1.2452543288203626 0.13953095865553578 TDSEKPFRGS(ph)QS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TDSEKPFRGSQSPK 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 T(0.004)DS(0.032)EKPFRGS(0.966)QS(0.998)PK 52.784 0.082493 548370000.0 171930.0 119380.0 98993.0 108570.0 96525.0 150560.0 161250.0 148690.0 240910.0 156450.0 True False 171004.3479832187 123353.49113326601 112930.3539374192 122314.95086806711 108816.88660150177 140152.1415801175 153449.7214651807 159786.00283252113 181540.95852861172 146465.22705641607 1.1675422994247675 0.8422032561063263 0.7710386704546618 0.8351125610241491 0.742953728939274 0.9568970355409555 1.047687048654042 1.0909483844310301 1.2394816310815198 1.0 17.160198663262168 2.255363247405448 2.3316348756537297 1.1120762184642445 0.8621002123858454 0.42588518529031594 0.12194963500488168 0.2721869686843925 3.0254444082073677 0.054223430823691125 0.03787082061459245 180.03761346637614 -2.255363247405448 -0.2499760060783991 TDSEKPFRGS(ph)QS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDSEKPFRGSQSPKR 15 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 TDS(0.002)EKPFRGS(0.998)QS(1)PKR;TDSEKPFRGS(1)QS(1)PKR 67.43 0.039182 1778310000.0 988110.0 699850.0 543059.0 570033.0 585260.0 953110.0 958080.0 925620.0 1557570.0 790180.0 True False 982790.1255493423 723144.0841817404 619516.9868465542 642199.1193532001 659789.3918922025 887223.7490796098 911734.0101789786 994694.4646031219 1173727.743868703 739750.0358928668 1.3285435320907149 0.9775519420001335 0.8374680051198738 0.8681298927928752 0.8919085635404492 1.1993561419821284 1.2324893084709754 1.344635912592476 1.5866545277717112 1.0 19.496678335855954 2.4688646451864797 2.399736659194178 1.3250512186971646 0.9673773528640952 0.37746314448781126 0.1867478655152661 0.2822192971531866 3.2963348025445054 0.07233466070852265 0.06032386608351349 294.3504100746215 -2.4688646451864797 -0.35767386583306937 TDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDSLFVLPSRDDATPVRDEPMDAESITFK 29 2 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;H3BSK8 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 TDSLFVLPSRDDAT(1)PVRDEPMDAESITFK;TDSLFVLPSRDDAT(1)PVRDEPMDAESITFK 226.07 5.2313e-33 555670000.0 607410.0 498110.0 455490.0 438880.0 503350.0 632140.0 607960.0 566420.0 785140.0 614280.0 True False 604139.7720495946 514689.2902361467 519619.0328099466 494442.16300061933 567448.6389108093 588441.6496974996 578550.652167263 608689.1366224805 591652.7673369889 575076.1244884336 1.0505387831689499 0.8949933205695076 0.9035656510208635 0.8597855865437932 0.9867365636429274 1.023241314740645 1.0060418569487999 1.0584496742304295 1.0288251279138068 1.0 19.133393416846424 3.027147914063965 6.649234879299857 1.0259779214809936 0.9228153435252289 0.46403201927562077 0.04856872797887146 0.14347199902775534 21.759708071388435 0.01422113210278896 0.016811648964186965 1064.505510801079 -3.027147914063965 -0.10316257795576478 TDSREDEIS(ph)PPPPNPVVK ddPTM_BT-474_Trastuzumab_2h_R1 11 TDSREDEISPPPPNPVVK 18 1 P10644;P10644-2;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EMU2;K7EMZ6 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 1 TDSREDEIS(1)PPPPNPVVK;TDS(0.006)REDEIS(0.994)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDS(0.015)REDEIS(0.985)PPPPNPVVK;TDS(0.002)REDEIS(0.998)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK 220.34 1.7984e-18 55419089000.0 10360953.0 9319636.0 9086552.0 8266468.0 8475722.0 11186267.0 12062086.0 10088826.0 14073285.0 11297037.0 True False 10305170.780258084 9629834.450421073 10365859.53987416 9313002.001219949 9555054.957159821 10412986.691930117 11478596.818536758 10841705.426140375 10605112.484107468 10576050.426780038 0.9743874475261531 0.9105321988666947 0.9801257673305297 0.8805746592922937 0.9034615543213643 0.9845817929879551 1.085338699735333 1.0251185450749802 1.002747912136826 1.0 23.33429762497954 2.4944094126240324 5.768790808951724 1.032463967983103 0.9298108977350534 0.627113121705904 0.03580946081271816 0.10369668065452221 12.047776728166331 0.01194671264455442 0.01069053777104138 312.1831170710073 -2.4944094126240324 -0.10265307024804948 TDSS(ph)PNQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDSSPNQAR 9 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 TDS(0.04)S(0.96)PNQAR;TDS(0.027)S(0.973)PNQAR;TDS(0.025)S(0.975)PNQAR;TDS(0.026)S(0.974)PNQAR 237.8 3.0104000000000003e-10 1512640000.0 2294380.0 2068040.0 1720250.0 1882510.0 1852380.0 1575520.0 2170630.0 1998700.0 2593710.0 2272810.0 True False 2282027.313009584 2136873.4612434194 1962446.2473189568 2120835.5729818996 2088269.6130835484 1466608.010775151 2065628.3342881564 2147853.1431929506 1954524.9244333797 2127757.3199494644 1.0725035658971596 1.0042843895816895 0.9223073650925407 0.996746928372579 0.9814416303515037 0.6892740995528494 0.9708007181651789 1.0094446030358215 0.9185845143654826 1.0 21.02090218385188 4.851817229110498 1.1613924682218375 0.9340599447737257 1.1695221471208854 0.19254779527873223 0.08845382388124691 3.5173695655023907 3.3645581906768833 0.026584264770641842 1.0678424974894574 71091.42656013802 -4.851817229110498 0.23546220234715975 TDSTS(ph)DGRPAWMR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 TDS(0.038)T(0.038)S(0.925)DGRPAWMR 167.22 8.492299999999999e-05 945750000.0 1660100.0 1266000.0 1161200.0 1257000.0 1145700.0 1500800.0 1323600.0 1262100.0 2027300.0 1458700.0 True False 1651162.20605445 1308138.0446868395 1324686.8666686646 1416136.0711168847 1291598.1039040706 1397053.228503193 1259572.4113569802 1356284.3108139427 1527699.0794282274 1365604.5171440982 1.209107164867572 0.957918656729813 0.9700369690040239 1.0370030659231149 0.9458068479483372 1.0230291500681792 0.9223551881558917 0.9931750325858273 1.1186980273198854 1.0 20.381108304954346 4.7441726154393065 24.958029096226568 0.9925416226477378 1.2091072599844612 0.594284898765562 0.0526243893144558 396.8796806359428 1764974.1491199727 0.012008803006430542 0.10624666665313615 55484.619927190586 -4.7441726154393065 0.2165656373367234 TDSTSDGRPAWMR ddPTM_BT-474_Trastuzumab_2h_R1 4 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 174.89 1.7508e-05 1445320000.0 1369800.0 1620980.0 1451310.0 1440200.0 1512490.0 1632800.0 1706350.0 1509950.0 1892040.0 1677400.0 False True 1362425.1489990877 1674933.3393968965 1655641.8329873395 1622529.1723329662 1705096.6362694146 1519928.3791977668 1623807.3316099893 1622630.136370742 1425772.0940370837 1570346.8959056097 0.8675950215531105 1.066600853457269 1.054315984133264 1.0332297765311678 1.0858089003870037 0.9678933891363113 1.0340437108792764 1.0332940706295222 0.9079344810719987 1.0 20.582651860747635 1.2585091766953593 24.973379294402946 0.9539672140142007 1.0230375318880458 0.1406113565433691 0.06211912041355157 344.84399381646807 431708.8949882173 0.039096945638262444 0.0142339922445779 18.134649942024225 -1.2585091766953593 0.0690703178738451 TDTGEPMGR ddPTM_BT-474_Trastuzumab_2h_R1 5 TDTGEPMGR 9 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;;; 136.8 0.00042496 1106968000.0 2068030.0 2303990.0 2081920.0 2101730.0 2185330.0 2322210.0 2354500.0 2145230.0 2813560.0 2320310.0 False True 2056895.9562597305 2380676.914358635 2375036.239626959 2367808.802504766 2463618.822034287 2161681.088594348 2240603.8399365414 2305317.955857219 2120195.8377724495 2172225.8292826675 0.9469070519886865 1.0959619770034703 1.0933652512599326 1.090038047879527 1.1341448889997987 0.9951456517337327 1.0314783158049705 1.0612699309530367 0.9760476140146994 1.0 21.050742665951727 2.7148304248327126 24.98072103204314 1.0217898252141204 1.0755898404787059 0.2435065754045196 0.05085007508390617 1250.1137840334031 1315991.3990474918 0.01644141146043899 0.01551105820304748 518.5975071590254 -2.7148304248327126 0.053800015264585443 TDTS(ph)PVLETAGTVAAMAATPSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDTSPVLETAGTVAAMAATPSAR 23 0 Q8WWH5 Q8WWH5 TRUB1 Probable tRNA pseudouridine synthase 1 1 T(0.035)DT(0.225)S(0.74)PVLETAGTVAAMAATPSAR;TDT(0.104)S(0.896)PVLETAGTVAAMAATPSAR 206.11 1.4998e-24 92210000.0 130685.0 131738.0 126943.0 116255.0 105139.0 146176.0 146562.0 119953.0 164657.0 141572.0 True False 129981.40648046849 136122.81969269738 144815.4709916642 130972.8710801063 118527.82844232366 136071.19718129156 139472.2361387894 128904.50196899215 124079.48864076051 132536.75375411293 0.9807197082977812 1.027057143298058 1.092643865869321 0.9882003849520262 0.894301581146471 1.0266676474793992 1.0523287479753989 0.972594380937838 0.9361892843019027 1.0 17.016032963214606 3.511773367384463 24.86858960487726 0.9818913955830543 1.0340969762587662 0.19588473751983215 0.048443552942330936 983.8102009006464 706042.9304774399 0.013401521168938012 0.020750439278382347 3249.1769779924784 -3.511773367384463 0.052205580675711905 TDVAVQIISNIYHNFPEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDVAVQIISNIYHNFPEQR 19 0 O60306 O60306 AQR Intron-binding protein aquarius 0 250.22 3.1256999999999995e-25 188000000.0 232840.0 215390.0 248920.0 248030.0 227000.0 301590.0 276580.0 228230.0 267090.0 252760.0 False True 231586.41531095584 222559.1259439953 283965.7723485739 279430.572568911 255907.10446558805 280741.793166496 263200.76876179647 245261.6815284574 201269.24832263865 236628.64040127702 0.978691399816309 0.9405417939543477 1.2000481930970914 1.1808822976586861 1.0814713892266736 1.1864235567191337 1.112294641576177 1.036483500528678 0.850570108425271 1.0 17.852265175604966 1.4558105623433115 4.291549299461882 0.926084838194337 1.0998493144494934 0.3752714800720278 0.08737156305680631 0.21143633893144959 7.544522620948044 0.06259007396831202 0.023619051910603643 28.56344344696851 -1.4558105623433115 0.17376447625515645 TDVSNFDEEFTGEAPT(ph)LSPPRDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 TDVSNFDEEFTGEAPT(0.559)LS(0.441)PPRDAR 62.57 0.08477 165980000.0 27003.0 51207.0 35978.0 51627.0 44681.0 48049.0 53427.0 33702.0 70028.0 47002.0 True False 26857.618848315346 52911.39403971482 41043.389673617996 58162.972906564406 50370.86050496445 44727.485725179795 50842.53189904002 36217.0143752884 52770.537727124625 44002.292119563244 0.6103686320552959 1.202469041747728 0.9327557201360033 1.3218168896411961 1.1447326509286493 1.0164808143095376 1.1554518969350607 0.8230710863170344 1.1992679286737213 1.0 15.425291056558422 4.74831436837092 24.72612829076214 1.076317050195816 0.6103683384172586 0.5099656617296472 0.1401401074618353 978.5109868937501 2480503.098878556 0.03320313271097046 0.43683245105468776 56016.29342746959 -4.74831436837092 -0.46594871177855735 TDVSNFDEEFTGEAPTLS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TDVSNFDEEFTGEAPTLSPPR 21 0 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 TDVSNFDEEFTGEAPT(0.003)LS(0.997)PPR;TDVSNFDEEFTGEAPTLS(1)PPR 174.4 1.9656e-12 376030000.0 99370.0 96667.0 83577.0 83395.0 98637.0 100902.0 98313.0 92922.0 108120.0 97527.0 True False 98835.00296104499 99884.50265856442 95343.91513569318 93952.79844931795 111197.8372826968 93926.88223775929 93557.22459786844 99856.3114883551 81475.27473377384 91302.74336293449 1.0824976262560837 1.0939923487459393 1.044261230538219 1.0290249228968873 1.217902476825674 1.0287410736870597 1.0246923712464173 1.0936835828844662 0.8923639283203594 1.0 16.478370588900678 1.2485189674973143 24.99946591804375 0.9461819568402778 1.0761210390023699 0.44054879357041443 0.05889490936702984 157.21137123942472 394670.4390395091 0.03910496020242376 0.013904062556883591 17.722254441091184 -1.2485189674973143 0.12993908216209205 TDWDAGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TDWDAGFK 8 0 P52298-2;P52298;C9JQX9;B3KSB0;P52298-3 P52298-2 NCBP2 Nuclear cap-binding protein subunit 2 0 ; 94.302 0.024324 279680000.0 581360.0 521720.0 483830.0 486430.0 488700.0 615090.0 616100.0 560470.0 807490.0 613280.0 False True 578230.0223551675 539085.1348136005 551949.058474251 548011.9881252078 550933.0482481617 572570.2760661169 586296.8892694442 602295.1174089925 608494.9093116451 574139.9453445765 1.0071238328629728 0.9389437874594538 0.961349341653963 0.9544920059451922 0.9595797204417 0.9972660510887854 1.0211741823982854 1.0490388663821646 1.0598372648439398 1.0 19.131042907934404 2.3672026297445807 1.9592889567769467 1.040562550075815 0.962060983157279 0.6784152629447018 0.022077213782526438 0.16733457422179746 1.3132186616553496 0.00935605528309998 0.0068841418549421655 232.91777338331323 -2.3672026297445807 -0.07850156691853616 TDYNASVSVPDSSGPER ddPTM_BT-474_Trastuzumab_2h_R1 4 TDYNASVSVPDSSGPER 17 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;; 212.03 3.3005e-17 256160000.0 2904810.0 1746260.0 1139540.0 1174110.0 1208300.0 1891640.0 1825580.0 1642340.0 3895880.0 1599590.0 False True 2889170.8257147274 1804383.208463537 1299977.32694076 1322752.205615791 1362169.8428448006 1760875.3792415876 1737269.7210071571 1764899.7504335388 2935792.5761174187 1497502.7967221034 1.9293258296671352 1.2049281059195127 0.8680967606780378 0.8833053323914817 0.9096275785437368 1.1758745179614907 1.1601111696150963 1.1785619060590358 1.9604588268840633 1.0 20.514127266704406 1.434232015818203 21.085064328233898 1.5099954838851102 1.1373938202249314 0.1073711436301773 0.35856463708765945 24.993943159351037 12289.957190902891 0.20001339928463235 0.08728694141008626 27.1789087665088 -1.434232015818203 -0.3726016636601788 TDYYAR ddPTM_BT-474_Trastuzumab_2h_R1 5 TDYYAR 6 0 P46777;A0A2R8Y4A2;R4GNJ2 P46777 RPL5 60S ribosomal protein L5 0 ;;;; 168.62 0.01465 8371580000.0 3258450.0 3731610.0 3383040.0 3276700.0 3152170.0 3245090.0 3508620.0 3031590.0 4171450.0 3406750.0 False True 3240906.867247826 3855814.383044118 3859342.6260891785 3691529.884032379 3553580.165124633 3020764.5664201896 3338894.6463699937 3257822.639902099 3143452.0420662356 3189328.2983345827 1.016172235683663 1.208973809644358 1.2100800748873883 1.157463120356734 1.114209586695812 0.9471475758696857 1.0468958771392434 1.0214761025396109 0.9856156996154009 1.0 21.604821180555383 2.9176956022456033 4.818913870985878 1.007524198931745 1.1550480138065562 0.6157207836787799 0.055940224702707 0.14727890250609937 6.008691910393612 0.017095841245511098 0.01842788156345409 827.3620609373797 -2.9176956022456033 0.14752381487481125 TEAAFSYYEFLLHVQQQICK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEAAFSYYEFLLHVQQQICK 20 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 0 264.38 1.4792999999999999e-36 131230000.0 140890.0 118730.0 123040.0 114860.0 108220.0 148180.0 147460.0 130810.0 182110.0 143480.0 False True 140131.46389435063 122681.85627619944 140362.96251714835 129401.26422313903 122001.17552980581 137936.66537820024 140326.7964480962 140571.70643972082 137231.43064897874 134322.98356059182 1.0432426393442835 0.9133348070761012 1.0449660869379955 0.9633590677709102 0.9082673143183441 1.02690292995151 1.0446968398732457 1.0465201316520063 1.0216526391187175 1.0 17.03534665509141 2.511789358970842 24.681755683919402 1.0343036008365067 0.9738169860521597 0.26257017975859975 0.044204506886403726 619.1763159345455 440818.24719838356 0.013624734951508706 0.012838270441064049 324.92966213522436 -2.511789358970842 -0.060486614784347026 TEADVEEEALRR ddPTM_BT-474_Trastuzumab_2h_R1 4 TEADVEEEALRR 12 1 Q9BV36-2;Q9BV36-5;H7C3K9;H7C2D8;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 ;;; 152.38 9.6617e-05 1397030000.0 1365140.0 1451190.0 1269330.0 1333840.0 1215790.0 1350460.0 1423260.0 1297870.0 1718310.0 1312170.0 False True 1357790.2379213134 1499491.9818871205 1448040.6307858545 1502704.0072383045 1370613.6499480926 1257105.8788408996 1354411.476418808 1394723.6498503215 1294855.5246743532 1228426.1871947437 1.1053087699326793 1.2206610356552132 1.178777077434849 1.2232757840093809 1.1157476649680116 1.023346695100704 1.1025582900603632 1.1353744037607483 1.0540767839143097 1.0 20.228379741987734 3.0516907615573703 5.935555038100395 1.0788545294272784 1.1837609536822957 0.5692723744462318 0.04775600230368521 0.15524028604534534 12.074007751274289 0.013919607662680472 0.016608879961614007 1126.39512335848 -3.0516907615573703 0.10490642425501728 TEAEIAHIALETLEGHQR ddPTM_BT-474_Trastuzumab_2h_R1 6 TEAEIAHIALETLEGHQR 18 0 O75955;A0A140T9R1;A0A140T9X0;A2AB09;A0A140T9C3;A0A140T959;A2AB13;A2AB11;A0A0G2JJQ6;A0A140T910;A2AB12;A0A140T957;A2AB10;A0A140T9B1 O75955 FLOT1 Flotillin-1 0 ;;;;; 273.32 3.0395e-39 542578000.0 307623.0 375357.0 351536.0 356735.0 381691.0 392481.0 355652.0 310559.0 430049.0 331070.0 False True 305966.79194812843 387850.5308369021 401029.2131943122 401897.6144231361 430297.0863901971 365349.71227089636 338447.7540374225 333734.4895666481 324069.1863113645 309940.8291567127 0.9871780777660148 1.2513695981654505 1.29388959268591 1.2966914217678889 1.3883201111675085 1.1787724555843133 1.0919753778754204 1.0767683963247863 1.045584046455229 1.0 18.241633291129148 2.300710884173759 3.003525019637244 1.058234985197804 1.251842138708079 0.4495127352464028 0.09886137239953768 0.2440363293565784 4.498415183639993 0.03990293114207153 0.03065884515554164 199.8530977050658 -2.300710884173759 0.19360715351027502 TEAHQDVVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEAHQDVVGR 10 0 Q9H0A0;Q9H0A0-2;A0A087WV29;E9PMU0 Q9H0A0 NAT10 N-acetyltransferase 10 0 127.83 0.00034568 86507000.0 107870.0 135890.0 129920.0 126950.0 133130.0 134500.0 129190.0 134390.0 162530.0 144520.0 False True 107289.23990548379 140413.01650276035 148211.60671511633 143021.85698352332 150083.31637666837 125202.33157894414 122940.58614627397 144418.86421859253 122476.65929042075 135296.60987020296 0.7929928178423089 1.0378162219841711 1.09545691394118 1.0570986007759662 1.109291034865183 0.9253914913245589 0.9086745504134748 1.0674241162224318 0.9052455889908768 1.0 17.045766164566327 1.2286250866285116 24.99732313357989 0.9526228532882578 1.0053637377739117 0.03350968008644917 0.09582995015632943 835.9160725805151 2103052.170239563 0.0870726231374804 0.022805210265263904 16.928757607136713 -1.2286250866285116 0.05274088448565395 TEAQDLCRAS(ph)PEPPGPESSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEAQDLCRASPEPPGPESSSR 21 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 TEAQDLCRAS(1)PEPPGPESSSR 94.837 0.0011092 0.0 67574.0 83211.0 68956.0 104670.0 91768.0 89607.0 98067.0 71070.0 135400.0 100890.0 True False 67210.18909217727 85980.62783288823 78664.40542370353 117921.21126794317 103454.11084844962 83412.67900218921 93323.12455767974 76373.60428614751 102032.4842670458 94451.11382372536 0.7115870461582064 0.9103188342845205 0.8328584199707305 1.2484893665523118 1.0953191197038354 0.8831307077845875 0.9880574275899933 0.8086045912458375 1.0802676658474308 1.0 16.527280189381624 4.645204838098438 1.6043148301651746 0.9870831835489549 0.6547513102129588 0.33298918286568824 0.12315486873923467 1.1248455987893131 3.2062140832212878 0.03496917136920723 0.5519663177275073 44177.87663365999 -4.645204838098438 -0.332331873335996 TEAQGEEDDAEGQDQDKKS(ph)PKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEAQGEEDDAEGQDQDKKSPKPK 23 3 O14617-5;O14617-2;A0A2R8Y611 O14617-5 AP3D1 AP-3 complex subunit delta-1 1 TEAQGEEDDAEGQDQDKKS(1)PKPK;TEAQGEEDDAEGQDQDKKS(1)PKPK;TEAQGEEDDAEGQDQDKKS(1)PKPK 224.56 9.2045e-33 1782080000.0 1386310.0 538590.0 363667.0 336741.0 351806.0 843326.0 763240.0 716328.0 1698510.0 564519.0 True False 1378846.2609935205 556516.64256547 414868.1525497701 379372.37607316725 396606.4087824696 785028.8585958713 726319.1653400591 769784.0327998814 1279934.9693679458 528490.9141109687 2.609025480245059 1.0530297261621733 0.7850052696698946 0.7178408671629677 0.7504507612011528 1.485415997957983 1.3743266836703874 1.456570041690911 2.421867500827449 1.0 19.01151914324491 1.9599499738519566 1.6683951504109573 1.6920276311098243 1.1516689567669447 0.07259003342339398 0.6129363094865454 0.8501927080645044 4.404879281899597 0.40079158798818454 0.19063034095817036 91.19057913676338 -1.9599499738519566 -0.5403586743428797 TEAS(ph)PESMLS(ph)PSHGSNPIEDPLEAETQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEASPESMLSPSHGSNPIEDPLEAETQHK 29 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7 H7C128 BRD8 Bromodomain-containing protein 8 2 T(0.249)EAS(0.608)PES(0.34)MLS(0.749)PS(0.048)HGS(0.005)NPIEDPLEAETQHK 62.594 0.0098491 67510000.0 53679.0 50091.0 52901.0 51968.0 55004.0 61555.0 58158.0 52381.0 72129.0 68134.0 True False 53389.99822829757 51758.248654351046 60349.00097626508 58547.143471600924 62008.43336574977 57299.84773488402 55344.67535486493 56289.93620532851 54353.774429082376 63785.62978754787 0.8370223576395617 0.8114405835098489 0.9461222093012291 0.9178735659835157 0.9721379811139681 0.8983190716425286 0.8676668324699873 0.882486171145673 0.8521319709489368 1.0 15.960943816558483 TEAS(ph)PESMLSPSHGSNPIEDPLEAETQHK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEASPESMLSPSHGSNPIEDPLEAETQHK 29 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7 H7C128 BRD8 Bromodomain-containing protein 8 1 T(0.009)EAS(0.912)PES(0.079)MLS(0.001)PSHGSNPIEDPLEAETQHK;T(0.026)EAS(0.972)PES(0.003)MLSPSHGSNPIEDPLEAETQHK;T(0.165)EAS(0.782)PES(0.04)MLS(0.012)PS(0.001)HGSNPIEDPLEAETQHK 244.22 2.3178e-45 313170000.0 78848.0 120357.0 128436.0 125615.0 123238.0 170516.0 144817.0 132889.0 142103.0 160678.0 True False 78423.49112883638 124363.00998765715 146518.6724142754 141517.84612040385 138931.628811146 158728.6302714885 137811.64845533684 142805.8519766689 107083.61973264407 150423.39247664332 0.5213516982806609 0.8267531262264768 0.9740418029531264 0.9407967988913541 0.9236038791820116 1.0552124085097654 0.9161583593239014 0.9493593358416164 0.711881429939637 1.0 17.1986694136984 4.699966577709327 2.6174380763150182 0.9357447664658123 0.4557360852845417 0.6831330234126174 0.08450204074867561 0.23077031607457457 2.18969389328545 0.02021338063654596 0.23333884798363877 50114.86649105007 -4.699966577709327 -0.4800086811812706 TEAS(ph)PESMLSPSHGSNPIEDPLEAETQHKFEMSDSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLK 37 1 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7 H7C128 BRD8 Bromodomain-containing protein 8 1 T(0.156)EAS(0.814)PES(0.03)MLSPSHGSNPIEDPLEAETQHKFEMSDSLK 212.08 2.4085999999999996e-31 109150000.0 64307.0 108530.0 115960.0 117320.0 127950.0 171910.0 168860.0 155270.0 163790.0 162060.0 True False 63960.77825717938 112142.35544222964 132286.16005761139 132172.69997090934 144243.6740809339 160026.26633261185 160691.59669215747 166857.03584508426 123426.14917355552 151717.19205345347 0.4215789746137967 0.7391539081656566 0.8719259713889506 0.8711781320362285 0.950740467369799 1.0547668604111187 1.0591521930852905 1.0997899024277793 0.8135277716586636 1.0 17.211025050364007 4.895970672423646 0.7879954442070103 1.0144588369715766 1.80763062796282e-18 0.8253317037832633 0.07976184088468398 1.23841823411807 0.4986828288002485 0.029132627972562337 1.1673580824150298 78699.26428854775 -4.895970672423646 -1.0144588369715766 down TEASPESMLS(ph)PSHGSNPIEDPLEAETQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEASPESMLSPSHGSNPIEDPLEAETQHK 29 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7 H7C128 BRD8 Bromodomain-containing protein 8 1 T(0.008)EAS(0.042)PES(0.178)MLS(0.767)PS(0.005)HGSNPIEDPLEAETQHK 111.38 0.00053316 45663000.0 12215.0 13282.0 13044.0 12521.0 10038.0 18955.0 16111.0 14203.0 16327.0 16260.0 True False 12149.23579721408 13724.083340861454 14880.48181951951 14106.15731619294 11316.279800112654 17644.68546527053 15331.649380003253 15262.899981372648 12303.429620591265 15222.272879113634 0.7981223233676198 0.9015791169853594 0.9775466474482208 0.9266787836623197 0.7434027684288617 1.1591360636742145 1.0071852936652905 1.0026689248433298 0.8082518109022148 1.0 13.893896167208913 2.746096192778529 24.998148530478943 0.9971764750770209 0.8804329807045286 0.28164693462253687 0.09981532716667031 858.1854783850747 2846903.0936664445 0.030980208067782882 0.0322796909676037 557.3091748185122 -2.746096192778529 -0.11674349437249232 TEASPESMLSPS(ph)HGSNPIEDPLEAETQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEASPESMLSPSHGSNPIEDPLEAETQHK 29 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7 H7C128 BRD8 Bromodomain-containing protein 8 1 T(0.197)EAS(0.183)PES(0.183)MLS(0.197)PS(0.213)HGS(0.027)NPIEDPLEAETQHK 81.51899999999998 0.0019032 50826000.0 26243.0 34333.0 37761.0 33852.0 37837.0 48024.0 43473.0 44375.0 45650.0 43003.0 True False 26101.710603871405 35475.75315026321 43077.42057550415 38137.65972907624 42655.317672530626 44704.21391633612 41370.04490701269 47686.48783168425 34400.16917866057 40258.511723279444 0.6483525964219417 0.881198823098803 1.0700201952720143 0.947319165477823 1.059535383864308 1.1104288758515122 1.0276098925706314 1.1845069723257948 0.8544818898203013 1.0 15.297006219242103 4.679288403721728 1.7430557243960068 1.0488914111895753 0.5374071224230982 0.645480522761537 0.08679149595641047 0.4518917704936079 1.508525047191759 0.02208361080890138 0.3691624213093981 47784.64938024769 -4.679288403721728 -0.5114842887664771 TEAVS(ph)PTVSQLSAVFENTDSPSAIISEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEAVSPTVSQLSAVFENTDSPSAIISEK 28 0 Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q9ULJ8 PPP1R9A Neurabin-1 1 T(0.001)EAVS(0.699)PT(0.295)VS(0.003)QLS(0.001)AVFENTDSPSAIISEK 231.74 1.5227e-35 94130000.0 123950.0 113150.0 112170.0 93143.0 111470.0 127660.0 121120.0 130360.0 177710.0 135160.0 True False 123282.66697213959 116916.12934938051 127962.56100088182 104934.89424983293 125665.0437655466 118835.1646793159 115260.96287666762 140088.12515466736 133915.7516919992 126533.9730837022 0.974304876134634 0.923990028132923 1.0112901530108014 0.8293021367504085 0.9931328377906792 0.9391561948403094 0.9109092211972393 1.1071186792024548 1.0583383136433562 1.0 16.949165260297686 1.746510042646769 14.71943160012383 1.061483687041917 0.9401206223007056 0.4934240518022568 0.05321121654484395 0.09374036594761494 157.50541393206936 0.023135268867148714 0.012760578992532728 55.78405015230061 -1.746510042646769 -0.1213630647412115 TEDEEFLIQHLLQAPS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 10 TEDEEFLIQHLLQAPSPPR 19 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR 293.4 8.467899999999997e-50 4872550800.0 769177.7 829141.3 745826.9 756063.7 620514.7 838744.7 821304.2 742514.6 998943.6 812654.2 True False 765036.532726876 856738.7669439994 850832.8446763727 851781.2868990423 699533.5689662239 780764.2530816507 781574.5781592743 797924.8098647413 752767.3349384498 760789.9132077352 1.0055818557073604 1.1261174104316303 1.118354528504443 1.119601183075178 0.9194832329161216 1.0262547380389118 1.0273198482139494 1.0488109739789182 0.9894549360736664 1.0 19.537138593056888 3.2751300197082247 24.99946932305088 1.0101468173368549 1.0966741103872548 0.4778987334708892 0.04578288756482127 157.04173661279296 107355.44285632123 0.012720161020902634 0.01722270427388304 1884.2131034937968 -3.2751300197082247 0.08652729305039997 TEDFIIDTLELR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEDFIIDTLELR 12 0 Q01780;Q01780-2 Q01780 EXOSC10 Exosome component 10 0 107.24 0.004268699999999999 8569400.0 19182.0 20475.0 18271.0 19741.0 22357.0 20284.0 23743.0 20618.0 24317.0 23092.0 False True 19078.726243320554 21156.497997601135 20843.397985621054 22240.208575909666 25204.031429679057 18881.814823400007 22594.46038293199 22156.619856082598 18324.401181106005 21618.248789944144 0.8825287574724895 0.9786406939419721 0.9641575591135061 1.0287701280528712 1.165868321461952 0.8734201834231362 1.0451568303461258 1.0249035465994305 0.8476357802686454 1.0 14.399962040254307 4.922548758251863 1.5364915779121215 1.0023149854930953 0.7927580117305651 0.1296206998095336 0.08458851767550486 3.416632816730083 5.332526715118585 0.021861519417014454 1.2313475079941152 83665.95222677069 -4.922548758251863 -0.20955697376253013 TEDGDWEWS(ph)DDEMDEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEDGDWEWSDDEMDEK 16 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK 311.23 1.2057999999999997e-57 588950000.0 598550.0 412200.0 314854.0 332449.0 370140.0 541120.0 473810.0 478810.0 646760.0 472580.0 True False 595327.4733051568 425919.82781983813 359182.7064399721 374537.00931323634 417275.13500833785 503713.6480594668 450890.00017002894 514541.23354791565 487374.66413998965 442419.5398039068 1.34561749593841 0.9627057340383703 0.8118599522054842 0.8465652522473172 0.9431661521850647 1.1385429501660964 1.0191457646058681 1.16301651996649 1.101611977527051 1.0 18.75505557916782 2.7449437199929263 24.3579012871576 1.094622866497423 0.9639374777817139 0.10555093488454625 0.14294132164245865 694.8296733274344 2651467.9955940056 0.045438475732749256 0.047089655583016955 555.8322225802685 -2.7449437199929263 -0.130685388715709 TEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEDGGWEWSDDEFDEESEEGKAAISQLR 28 1 O95747;C9JIG9 O95747 OXSR1 Serine/threonine-protein kinase OSR1 1 TEDGGWEWS(1)DDEFDEESEEGKAAISQLR 143.09 6.8434e-08 62163000.0 47170.0 47043.0 47321.0 50491.0 53404.0 69209.0 70095.0 64603.0 100230.0 73967.0 True False 46916.04196107967 48608.797816906 53983.38547849453 56883.15542304111 60204.68284969277 64424.744730462065 66704.23706109666 69424.00390738685 75529.65951319056 69246.36273366534 0.6775235566022099 0.7019689684476954 0.7795844192730365 0.8214605529798659 0.8694273673442086 0.9303700900255493 0.9632886757915909 1.0025653502466945 1.0907382934132146 1.0 16.079450673037393 3.2981085796381007 0.5273802801150463 1.0472010424071194 0.6349840030878442 0.95493172384149 0.027637598533192517 0.22428631468197552 0.12132875927189324 0.021104287223369288 0.04800494938230886 1986.5915306837467 -3.2981085796381007 -0.4122170393192752 TEDGKVEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TEDGKVEK 8 1 O75436;S4R3Q6;O75436-2;S4R2Y3 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ;;; 99.802 0.005978100000000001 2230660000.0 2513020.0 1871850.0 1721430.0 1462230.0 1589640.0 1685050.0 2216490.0 2231330.0 3659580.0 2386150.0 False True 2499490.179542769 1934153.3956927788 1963792.3810622091 1647348.1680741806 1792071.231465538 1568566.459681038 2109269.9108859436 2397843.175064159 2757725.544859642 2233863.8641142044 1.1189089092203448 0.865833154277613 0.879101189920055 0.7374434022314089 0.8022293839182314 0.7021763881314329 0.9442249121668539 1.07340613435948 1.2345092237539574 1.0 21.091109837261886 1.7928342714066754 2.945144986128305 1.1223629955946712 0.8451425431040793 0.4679902041122961 0.11890638849765442 0.20529185225379576 3.3898727096962453 0.06791809962871194 0.0331851609613709 62.06321532063787 -1.7928342714066754 -0.2772204524905919 TEDLFENR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEDLFENR 8 0 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 0 ; 102.46 0.017261000000000002 0.0 408420.0 437660.0 434090.0 461030.0 393450.0 483780.0 430940.0 387150.0 563620.0 464690.0 False True 406221.11209972785 452227.2485289434 495206.0988220814 519396.3507295286 443553.5253391437 450337.42729562474 410093.78584933263 416041.098907866 424723.40312106616 435033.08635887504 0.9337706138622773 1.0395238033823575 1.1383182437153008 1.1939237888243266 1.019585726344593 1.0351797171678216 0.9426726350442021 0.9563435792666541 0.9763013812946999 1.0 18.73076560346862 2.5550214859331377 2.2021119592788434 0.9642527302807603 1.076442936254266 0.3074876432634652 0.06683876076598633 0.3666697559071233 3.5454318127181073 0.027370391642648092 0.023987550714905187 358.93969209709576 -2.5550214859331377 0.11219020597350571 TEDPDLPAFYFDPLINPISHR ddPTM_BT-474_Trastuzumab_2h_R1 6 TEDPDLPAFYFDPLINPISHR 21 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;;;; 312.29 1.4346999999999996e-66 1894847000.0 824194.0 1007183.0 916998.0 931842.0 906564.0 1012677.0 976404.0 864447.0 1093337.0 983735.0 False True 819756.6310805613 1040706.4773000196 1046103.3477105 1049813.101656086 1022009.5517741893 942673.0225752433 929171.6082944999 928956.4247129235 823898.7463152079 920952.1900820934 0.8901185532850392 1.130033120619705 1.135893218970738 1.1399213911012103 1.1097313875577925 1.023585190118516 1.0089249130420916 1.0086912596734436 0.894616197439919 1.0 19.8127667372444 2.174139063851446 1.3886558152637738 0.9648754698599792 1.0883352389207785 0.29821363028233483 0.07456353902635328 0.5210297804555326 1.9320557860560248 0.04674607517089882 0.025690527241366997 149.32724883679973 -2.174139063851446 0.12345976906079936 TEDSLMPEEEFLRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEDSLMPEEEFLRR 14 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 ;; 254.4 4.7604e-24 763430000.0 566030.0 675810.0 602740.0 614840.0 640140.0 695710.0 637850.0 584000.0 750150.0 664450.0 False True 562982.5573718455 698303.9273142276 687600.5528900033 692678.6809590348 721658.0345929572 647617.2052251835 606994.7586763754 627581.0454919122 565285.58399501 622044.2321357352 0.9050522909583028 1.1225952934514982 1.1053885196060513 1.113552132106076 1.1601394198531616 1.0411111811159244 0.9758064255210779 1.0089009962156015 0.9087546428236313 1.0 19.246657645168902 2.399376844537719 4.020610921268614 0.9782752282270974 1.0879894228170421 0.3499289319141691 0.06875638602263742 0.24490957081936243 7.722002484961031 0.02445895745216725 0.020297303987989207 250.8284789407822 -2.399376844537719 0.10971419458994469 TEDTEHVIIPVCLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEDTEHVIIPVCLR 14 0 Q9Y4E8;Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8;Q9Y4E8-2 USP15 Ubiquitin carboxyl-terminal hydrolase 15 0 ; 163.71 4.2366e-06 580130000.0 729790.0 786230.0 753610.0 753980.0 756390.0 868300.0 861150.0 750450.0 1043050.0 845970.0 False True 725860.8917272914 812399.1902639288 859711.7375044534 849433.7906926884 852711.783025225 808276.4647583424 819492.8845875359 806452.3897078865 786004.3036539308 791979.4703286443 0.9165147821648509 1.0257831429984052 1.085522756224606 1.0725452142594083 1.0766842007550763 1.0205775465656142 1.0347400599253849 1.018274361800359 0.9924554020671343 1.0 19.595103507722843 1.5100272352804813 1.9763579158747142 0.9954621575294014 1.0382188178447571 0.0885988761606522 0.04498478087668082 0.737190809197102 5.710328836331961 0.03896507786817709 0.01299585028473272 32.36139506260142 -1.5100272352804813 0.04275666031535574 TEEARPSPAPGPGT(ph)PTGTPTR ddPTM_BT-474_Trastuzumab_2h_R1 4 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 TEEARPSPAPGPGT(0.98)PT(0.02)GTPTR;TEEARPSPAPGPGT(0.995)PT(0.005)GTPTR;TEEARPSPAPGPGT(0.959)PT(0.041)GTPTR;TEEARPSPAPGPGT(0.997)PT(0.003)GTPTR 276.52 1.3367999999999999e-44 3549890000.0 464634.0 507812.0 433712.0 437088.0 483339.0 520054.0 559988.0 502349.0 662144.0 588901.0 True False 462132.46216969076 524714.2154411641 494774.8797077155 492423.2959843576 544889.3566752981 484103.89105543576 532899.2410780994 539836.8332565349 498967.4834750276 551316.8339964874 0.8382339041231509 0.9517471317491226 0.8974419955964338 0.8931766012200073 0.9883415906701113 0.8780865397237627 0.9665934508386417 0.9791771264143447 0.9050467040123187 1.0 19.072522128019774 7.999999999999548 0.1285446365809699 1.0083064818752383 0.5831849993457418 0.3498322230969064 0.04165562742091197 93.68016389798117 0.8160503842689223 0.2148193107071565 7.211290938617693 99999999.9998959 -7.999999999999548 -0.42512148252949655 TEEDSEEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEEDSEEVR 9 0 Q16543;K7EKQ2 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ; 225.4 6.384399999999999e-07 1035030000.0 1752870.0 1628240.0 1519960.0 1407060.0 1524390.0 1722400.0 1669910.0 1537390.0 2008130.0 1651350.0 False True 1743432.7426821648 1682434.9841081367 1733957.1562708418 1585193.6517308862 1718512.0307325867 1603334.5420934798 1589130.0736243082 1652117.8485082379 1513253.2690633875 1545959.4292081362 1.1277351201739994 1.0882788722145869 1.1216058607430603 1.025378558959239 1.111615219820377 1.0371129486332846 1.027924823640608 1.0686683086854858 0.9788441019040834 1.0 20.560071028271125 4.556408500274944 0.1967615133829157 0.9835917728060742 1.2303673187529158 0.5979193102172047 0.03160544459421177 9.560698085514382 0.37593792337639137 0.07047788085641096 0.5909354358296552 36008.787696278625 -4.556408500274944 0.2467755459468416 TEEEEIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEEEEIDR 8 0 Q13435;E9PPJ0;H0YEX5 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ; 208.35 0.00013031 1302550000.0 1452220.0 1284290.0 1222410.0 1065340.0 1172490.0 1401990.0 1356120.0 1333350.0 1843580.0 1370060.0 False True 1444401.4088768112 1327036.8162803005 1394514.702621806 1200211.9347682276 1321799.6516072992 1305073.7312294703 1290519.2947185163 1432851.3476141093 1389254.4117063521 1282621.5978326213 1.126132143196065 1.0346284660438685 1.0872378143158217 0.9357490446101564 1.0305452939829496 1.0175048770695805 1.006157464445664 1.1171271012708244 1.0831366118065682 1.0 20.290664175097373 -0.4454429659322281 7.447931219753497 0.9999994173458447 1.0478437748915022 0.06742259395046524 0.05424392149560692 0.0 0.0 0.05333873736446492 0.012572060963447143 0.3585560328405723 0.4454429659322281 0.04784435754565741 TEEEFKK ddPTM_BT-474_Trastuzumab_2h_R1 6 TEEEFKK 7 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;; 119.29 0.0077202 15533350000.0 12889040.0 11819450.0 8720970.0 8388260.0 14050480.0 24333300.0 25627300.0 26308900.0 37243500.0 23426600.0 False True 12819646.840746965 12212853.2482416 9948806.77196987 9450212.855932321 15839725.344280416 22651196.24542691 24387609.593206953 28272203.711887278 28065338.462331735 21931494.331478693 0.5845313888323005 0.5568637076732277 0.45363104864633674 0.43089689708777623 0.7222364835188342 1.0328159086230262 1.111990328821459 1.2891143341430977 1.2796819969558124 1.0 24.386500779513774 2.7419015547030905 1.807809004788689 1.2045020986192356 0.5042251602122734 0.9167886729778392 0.09155459686527176 0.08759591440350328 0.5682991189182731 0.035282291595252854 0.03464305784765066 551.952309282038 -2.7419015547030905 -0.7002769384069623 TEEKLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEEKLR 6 1 O14639-3;F8W8M4;O14639-5;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;A0A494C1P1;A0A494C1G0;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 0 ; 69.439 0.085273 257270000.0 309510.0 398550.0 449910.0 325050.0 445230.0 500970.0 434730.0 359690.0 560210.0 457170.0 False True 307843.6325497939 411815.4958214375 513253.4173121763 366201.29667187284 501927.4014150383 466339.12305653235 413700.4490701272 386531.8942688115 422153.75192940707 427993.01919707103 0.7192725552564355 0.9622014316822665 1.1992097868209546 0.8556244617234143 1.1727467012351522 1.0895951619290423 0.9666055998909582 0.9031266327519969 0.9863566296510662 1.0 18.70722774010085 4.707614716106951 4.220154066500102 1.014845772765382 0.7036317181166902 0.43198970911609713 0.10311990053318358 0.18445157362883016 7.08029114599147 0.025000273506294707 0.1609496974036718 51005.23068341819 -4.707614716106951 -0.3112140546486917 TEELEEESFPER ddPTM_BT-474_Trastuzumab_2h_R1 1 TEELEEESFPER 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 138.22 0.00058758 0.0 71463.0 70854.0 57025.0 59306.0 72073.0 76358.0 63391.0 73723.0 72786.0 63579.0 False True 71078.25114828572 73212.33255785245 65053.624329814484 66814.13351921889 81251.06933986049 71079.5511873979 60324.535152863675 79224.58461780859 54848.865582431274 59521.33378727952 1.1941642874185066 1.2300183463546457 1.0929463469737852 1.1225241315660492 1.3650747416084432 1.1941861289840336 1.0134943442036208 1.331028382209068 0.921499269126815 1.0 15.861119235073582 1.2225834801993132 24.998973367057243 0.960749437537125 1.1922451284063524 0.4622890910721541 0.10015962330256625 237.94404933287902 372294.0596701895 0.09232395391796165 0.02338416340827816 16.694886859238213 -1.2225834801993132 0.2314956908692274 TEELIES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEELIESPK 9 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 TEELIES(1)PK;TEELIES(1)PK 146.16 0.00011532 198240000.0 684440.0 500740.0 420240.0 336730.0 398070.0 566150.0 508040.0 541120.0 787900.0 517210.0 True False 680755.0510884327 517406.8281962783 479406.139208439 379359.983474295 448761.8549542586 527013.3830737489 483464.16429873114 581501.1221516846 593732.6023190946 484201.2149942406 1.4059342067048097 1.0685781286245486 0.9900969356595715 0.7834759016017904 0.9268086098453852 1.08841813434941 0.9984778008136178 1.200949324669913 1.2262104760025372 1.0 18.885247173897508 -0.8027637217120562 8.559278873002514 0.9999999990243078 1.0673421188275376 0.016479186210567653 0.16407899851447894 0.0 0.0 0.16545342420684891 0.03899774607573246 0.15748394241878516 0.8027637217120562 0.0673421198032298 TEELIES(ph)PKLESSEGEIIQTVDR ddPTM_BT-474_Trastuzumab_2h_R1 5 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 TEELIES(0.997)PKLES(0.002)SEGEIIQTVDR;TEELIES(1)PKLESSEGEIIQTVDR;TEELIES(1)PKLESSEGEIIQTVDR;TEELIES(1)PKLESSEGEIIQTVDR;TEELIES(1)PKLESSEGEIIQTVDR 235.55 2.5781999999999995e-37 2498960000.0 511882.0 378730.0 370451.0 327658.0 359959.0 545863.0 493826.0 491744.0 789494.0 523177.0 True False 509126.08418743726 391335.7991028807 422607.2807821857 369139.46920446865 405797.64500585245 508128.77563328715 469937.74978148367 528440.4343054362 594933.7823775997 489787.3959456354 1.0394838421770012 0.798991158903398 0.8628382116004749 0.7536728634916563 0.8285179413863367 1.0374476351157218 0.9594729339128298 1.0789179931532806 1.2146776076770158 1.0 18.901796122898332 2.324147378434384 1.3693404602220518 1.09652173351246 0.8506164968001604 0.5243965058700008 0.09457715945358808 0.32438844239326675 1.2083688512996904 0.05326419446543261 0.033792471419366754 210.93438372464868 -2.324147378434384 -0.24590523671229958 TEELKPQVEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEELKPQVEEK 11 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ;; 162.32 2.3043000000000006e-05 2563940000.0 2384550.0 1632060.0 1414350.0 1327970.0 1355560.0 2089210.0 2057790.0 2136570.0 3236600.0 2032300.0 False True 2371711.8477484095 1686382.1304988975 1613478.1862494207 1496090.8658401666 1528182.5309663971 1944787.8301713434 1958246.8361788152 2296011.7026826297 2438983.2982180254 1902596.8740604303 1.2465656178057398 0.8863580895620322 0.8480399648749625 0.7863414926396267 0.8032087888933739 1.0221754574950348 1.029249476269568 1.2067778171960266 1.2819233183185386 1.0 20.85953848227426 2.1256463730099764 1.9811098428377993 1.1795338449201271 0.9061037306252423 0.347315151600034 0.14075336093604132 0.3341094866374969 2.553895120650336 0.07534028219984187 0.04393330763018727 133.55076282824822 -2.1256463730099764 -0.27343011429488484 TEEPDRDER ddPTM_BT-474_Trastuzumab_2h_R1 5 TEEPDRDER 9 1 O95232;J3KPP4;H0YA81 O95232 LUC7L3 Luc7-like protein 3 0 ;;;; 170.47 5.2607e-05 1545066000.0 2165572.0 2593102.0 2308531.0 2123641.0 2474182.0 2417479.0 2521286.0 2477239.0 2742637.0 2394696.0 False True 2153912.800969668 2679411.8325067377 2633552.0986888353 2392493.7328581843 2789254.41207435 2250364.3668634524 2399321.7639321536 2662103.1533447574 2066750.860802936 2241864.4510776093 0.9607685245797689 1.1951712027989962 1.1747151338355677 1.0671892904623075 1.2441672870693068 1.003791449470443 1.0702349835552538 1.187450540136425 0.9218893050422827 1.0 21.096267621031334 1.2318023662737092 24.9999999444708 0.9609445927913002 1.1181883733619171 0.32702752686320247 0.08695305642676585 182.49766255135643 675062.1860713239 0.07230303749056026 0.0197059423039652 17.053061813244188 -1.2318023662737092 0.15724378057061694 TEEPLGS(ph)PHPSGTVES(ph)PGEGPQDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEEPLGSPHPSGTVESPGEGPQDTR 25 0 A0A0A0MR84;M0R202;A0A0B4J2G2;Q9NWS9-2;Q9NWS9 A0A0A0MR84 ZNF446 Zinc finger protein 446 2 T(0.003)EEPLGS(0.997)PHPS(0.006)GT(0.096)VES(0.898)PGEGPQDTR 114.0 0.0010106 281480000.0 96237.0 149990.0 149700.0 152740.0 136310.0 146810.0 146820.0 137180.0 146460.0 139930.0 True False 95718.87068493577 154982.32647913022 170776.45878427412 172076.868339215 153668.27052733183 136661.37025356723 139717.75569313375 147417.06818592534 110366.89546345282 130999.54759989967 0.7306809255348076 1.183075280171799 1.30364159199894 1.3135684167763246 1.1730442840662874 1.0432201695150884 1.0665514366497 1.125325017428062 0.8424982947310373 1.0 16.999202303936116 1.253410235648784 24.514897539304762 0.9212492036791908 1.1288027265734917 0.19379747497455113 0.15865871662560502 252.16527990383676 416298.95264843665 0.10854841976276641 0.03926140060088207 17.92298063889732 -1.253410235648784 0.20755352289430085 TEEPLGS(ph)PHPSGTVESPGEGPQDTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEEPLGSPHPSGTVESPGEGPQDTR 25 0 A0A0A0MR84;M0R202;A0A0B4J2G2;Q9NWS9-2;Q9NWS9 A0A0A0MR84 ZNF446 Zinc finger protein 446 1 TEEPLGS(0.999)PHPS(0.001)GTVESPGEGPQDTR;TEEPLGS(1)PHPSGTVESPGEGPQDTR 196.15 5.6298e-25 339000000.0 48346.0 69160.0 63278.0 73051.0 55663.0 60801.0 57733.0 52983.0 59564.0 55857.0 True False 48085.71050774557 71461.94879189711 72186.99237776418 82299.2491099123 62751.35310955072 56597.96998015891 54940.23422852263 56936.86050222258 44885.25031670838 52292.15843841634 0.9195587243616146 1.3665901528248587 1.3804553977778078 1.5738353812041406 1.2000145907813693 1.082341438378633 1.0506400169582766 1.0888221523553332 0.8583552803537271 1.0 15.674307000396501 2.8108504311952447 3.0475715635478027 1.025427187436305 1.3236023330370112 0.41388317587115464 0.16437204767861346 0.26444048337470183 4.824260954837118 0.054530667929398764 0.05699914583012197 646.919781505704 -2.8108504311952447 0.29817514560070624 TEEQGIPRPLHPPPPPPVQPPQHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEEQGIPRPLHPPPPPPVQPPQHPR 25 1 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 109.39 0.0020105 420690000.0 101990.0 115590.0 115330.0 113980.0 123890.0 135300.0 129780.0 111660.0 144520.0 119320.0 False True 101440.8971721543 119437.34327436959 131567.4615336696 128409.8563133672 139666.65714643925 125947.02946194162 123502.04559225502 119992.6361979913 108904.98246878466 111704.89544500851 0.9081150541167903 1.0692221034589098 1.1778128524227416 1.1495454680102397 1.250318140400535 1.127497850118345 1.1056099654383917 1.0741931740768047 0.9749347334772608 1.0 16.769332887469098 -0.4177357537596045 6.570283448729975 1.000001139433309 1.1008345089561336 0.07758623920288255 0.09277831877376572 0.0 0.0 0.09210042460590195 0.021708278262997885 0.3821767353373796 0.4177357537596045 0.10083336952282451 TEES(ph)PAS(ph)DEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 2 TEES(1)PAS(1)DEAGEK;TEES(1)PAS(1)DEAGEK 342.38 5.700899999999999e-63 3450700000.0 6547900.0 4523100.0 4125500.0 3401900.0 3594700.0 5438700.0 4959400.0 5101500.0 7150500.0 4685300.0 True False 6512646.833940076 4673648.649228307 4706334.540511173 3832580.1911953357 4052463.7375438316 5062735.470322699 4719494.875252195 5482199.83489211 5388355.086791065 4386280.142712862 1.484776763463193 1.0655153107338262 1.0729671583631137 0.8737654838491301 0.9238953294573271 1.1542207304596503 1.0759674990419656 1.2498517323386085 1.228456667489193 1.0 22.064566526250378 1.7620287938057835 24.99999999798498 1.1847680719583462 1.078603347830519 0.02079919871084801 0.16645773726426658 36.67665453472347 39099.64880279221 0.07806970758841504 0.04329516642754295 57.81343765529252 -1.7620287938057835 -0.10616472412782718 TEES(ph)PAS(ph)DEAGEKEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEESPASDEAGEKEAK 16 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 2 TEES(1)PAS(1)DEAGEKEAK;TEES(1)PAS(1)DEAGEKEAK 247.74 1.4348e-20 1529110000.0 2740100.0 1985360.0 1615890.0 1542250.0 1733430.0 2987400.0 2831700.0 2776280.0 5410000.0 2554710.0 True False 2725347.606053732 2051441.507424536 1843393.2664323351 1737498.6918695455 1954172.035655435 2780888.0695831766 2694719.8528555143 2983460.111264188 4076777.99028595 2391666.2206027275 1.1395183753387264 0.8577457379933011 0.770756910204543 0.7264804247775326 0.8170755679958389 1.1627408731316866 1.1267123437385063 1.2474400004329707 1.704576481102181 1.0 21.18958463131777 2.346032294213681 1.472475808989141 1.325713689785894 0.8509859112042132 0.4878932346517568 0.19859320403733735 0.32960538484376417 1.4333554114393163 0.10516068495253698 0.06958335732106449 221.83613714070455 -2.346032294213681 -0.4747277785816809 TEES(ph)PASDEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 TEES(1)PASDEAGEK;TEES(1)PASDEAGEK;TEES(1)PASDEAGEK;TEES(1)PASDEAGEK 417.15 5.591199999999998e-127 2802980000.0 5271340.0 3926770.0 3800290.0 3022240.0 3227740.0 5031270.0 4525710.0 4416740.0 6145070.0 4265640.0 True False 5242959.691140929 4057470.165667413 4335337.79928717 3404855.2741227476 3638773.556686152 4683470.147235642 4306784.117408882 4746339.566551285 4630699.838219309 3993403.2032018625 1.3129051649323031 1.0160431990474146 1.0856248614743307 0.8526199586840557 0.9111961331048734 1.172801720467518 1.0784746488798713 1.1885450391650227 1.1595873500843767 1.0 21.92918731369496 2.7070713356900113 24.985672720252854 1.1326278285714302 1.0271919534336775 0.09643963852585402 0.12453568419758806 1359.5222814036058 1078733.6203828556 0.040980864258793104 0.03864075212624748 509.41453883289284 -2.7070713356900113 -0.10543587513775265 TEESGEDRGDGPPDRDPTLS(ph)PSAFILR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEESGEDRGDGPPDRDPTLSPSAFILR 27 2 Q9H7N4;M0R3G4;M0R2L3;M0R232 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 TEESGEDRGDGPPDRDPT(0.002)LS(0.998)PSAFILR 295.2 6.636999999999998e-71 161790000.0 106360.0 109810.0 97793.0 90343.0 94414.0 105940.0 101950.0 103380.0 120030.0 111990.0 True False 105787.36957770688 113464.95946845335 111561.40436800604 101780.41453692365 106437.06326437883 98616.61715593567 97018.28901317931 111094.74055300326 90450.21481959759 104842.70232053712 1.0090103291527304 1.0822399361813022 1.0640836405277665 0.970791598119523 1.0152071713963193 0.9406149877216409 0.925369976792127 1.0596325551906483 0.8627230395403471 1.0 16.67786691915811 3.735753713376287 24.294550548250562 0.9736914008864547 1.0548241685156758 0.3380494479878601 0.05337532167039773 187.98323353379482 1627056.9547534126 0.013622123661243558 0.02216356088639434 5441.939551547707 -3.735753713376287 0.08113276762922117 TEESKADS(ph)PPPSYPTQQAEQAPNTCECHVCK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEESKADSPPPSYPTQQAEQAPNTCECHVCK 31 1 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312;D6RFZ4;P78312-3 E7EUR8 FAM193A Protein FAM193A 1 T(0.007)EES(0.215)KADS(0.777)PPPS(0.001)YPTQQAEQAPNTCECHVCK 155.01 2.6409e-09 287370000.0 79231.0 49292.0 46548.0 42809.0 42143.0 74006.0 64557.0 62229.0 105880.0 64417.0 True False 78804.42909939167 50932.65442235676 53101.55379753102 48228.61501069437 47509.66124886905 68890.13941138539 61434.131278311084 66872.84397245932 79787.29271931174 60305.85190983169 1.3067459724674604 0.8445723393230631 0.8805373295601161 0.7997335827840554 0.7878117917960052 1.142345845878917 1.0187092849656842 1.1088947731382104 1.3230439533232756 1.0 15.880010383526574 2.7204449482953437 24.160662861527673 1.1155157113928693 0.9101692355118378 0.2680257632487626 0.16005265998682158 702.4922665888975 936904.2798764564 0.05151781625649818 0.04867269745325503 525.3454174555204 -2.7204449482953437 -0.2053464758810315 TEESPAS(ph)DEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 TEESPAS(1)DEAGEK;TEESPAS(1)DEAGEK 236.4 1.0805e-16 256440000.0 632800.0 475010.0 449170.0 364920.0 430250.0 596840.0 533840.0 571630.0 748680.0 510590.0 True False 629393.0751106895 490820.420700391 512409.23174437153 411118.83458390983 485039.7872084543 555581.8556102373 508016.11973316007 614287.933278325 564177.8457980199 478003.70906190784 1.3167116973755004 1.0268129962079922 1.0719775224129229 0.8600745701131463 1.0147197145401965 1.162296118372341 1.0627869828252008 1.2851112274502594 1.1802792219023375 1.0 18.866662287254677 2.4405175776464665 2.1713515370749095 1.1707898527466851 1.0490734259755645 0.04855360197882985 0.12862326832302046 0.6185556016624727 5.9400199352015015 0.052968627340101736 0.04252139355154831 275.75130577449755 -2.4405175776464665 -0.1217164267711206 TEESPAS(ph)DEAGEKEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEESPASDEAGEKEAK 16 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 TEESPAS(1)DEAGEKEAK;TEESPAS(1)DEAGEKEAK 228.38 2.5175999999999997e-15 1466030000.0 838660.0 626180.0 602850.0 552030.0 556340.0 966210.0 914550.0 823050.0 1645930.0 774140.0 True False 834144.7477438861 647022.0227661959 687726.0399338648 621916.9413990888 627186.6013144726 899418.1769136919 870309.7225797256 884470.1703632168 1240312.6058320422 724733.7224254011 1.1509672062068934 0.8927720661332904 0.9489361660063423 0.8581316449823466 0.8654028119673025 1.2410326014687023 1.200868257747326 1.2204070860718887 1.7114045717111102 1.0 19.467091500046877 2.67355872767731 5.435519455850944 1.2798594589863714 0.9362563308459474 0.4510472106357082 0.18291215371657812 0.19733992171467932 11.612984180951571 0.0581178870443925 0.055023261500802854 471.58363714598426 -2.67355872767731 -0.34360312814042404 TEESPASDEAGEKEAKS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 3 TEESPASDEAGEKEAKSD 18 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D 210.14 3.5019e-16 1214960000.0 855460.0 651710.0 611640.0 568940.0 562290.0 1024470.0 960880.0 858530.0 1821990.0 863670.0 True False 850854.2984105411 673401.7733829858 697753.5955298151 640967.7456652672 633894.2985460595 953650.800242981 914398.5634819389 922597.8681270062 1372984.9779151755 808549.8411749111 1.052321397001522 0.8328512839783131 0.8629691825996811 0.7927374578836985 0.7839891448434916 1.1794582741581179 1.1309118089160937 1.141052562432479 1.6980832943088313 1.0 19.62497718245808 2.6595754361837884 4.891363593152252 1.2275431730973074 0.8593820799222681 0.4959242579090787 0.18420305230235162 0.1922586240216063 8.298112546617265 0.05959653132333615 0.05630848246654756 456.6415611459001 -2.6595754361837884 -0.3681610931750393 TEFLDLDNSPLSPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 TEFLDLDNSPLSPPSPR 17 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 TEFLDLDNSPLS(0.012)PPS(0.988)PR;TEFLDLDNSPLS(0.005)PPS(0.995)PR;TEFLDLDNSPLS(0.104)PPS(0.896)PR;TEFLDLDNSPLS(0.002)PPS(0.998)PR;TEFLDLDNSPLS(0.16)PPS(0.84)PR;TEFLDLDNSPLS(0.001)PPS(0.999)PR 179.46 9.5935e-10 784289000.0 704957.0 703896.0 646740.0 588828.0 656952.0 708838.0 679968.0 657871.0 836844.0 648021.0 True False 701161.5898400858 727324.7528458823 737795.3704351464 663373.5644261043 740610.9431404264 659837.6974851722 647075.3501099894 706964.6746212492 630615.0093350941 606663.744981309 1.1557664285042915 1.1988927290657376 1.21615207194865 1.0934781745471578 1.2207931482097125 1.0876497943774461 1.0666128567315745 1.1653319989362976 1.0394802962133876 1.0 19.210537571041616 1.2722374952042752 0.25199009347485485 0.9685786287793111 1.214102386104161 0.5595361942105074 0.048883278415744816 1.5930783346026836 0.410503764281381 0.15523355220899296 0.12070828805114021 18.71705408114056 -1.2722374952042752 0.24552375732485 TEGAQVDEPVVIT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEGAQVDEPVVITPR 15 0 A0A0J9YWL0;A0A494C1M5 A0A0J9YWL0 1 TEGAQVDEPVVIT(1)PR;TEGAQVDEPVVIT(1)PR;TEGAQVDEPVVIT(1)PR 176.1 9.1448e-06 710200000.0 306864.0 333420.0 293266.0 287196.0 332557.0 378622.0 340107.0 300581.0 373245.0 314403.0 True False 305211.8783197958 344517.68314335385 334555.3036862319 323554.984153131 374906.1627302316 352448.7523203192 323654.7250750896 323011.8805393912 281263.77097676136 294337.5313660497 1.036945159196237 1.1704850602789698 1.1366382742069199 1.0992651282066552 1.2737287052393722 1.1974305508528575 1.0996039940029934 1.0974199553834028 0.955582421553202 1.0 18.167111988388232 1.4545509931960732 2.122244107778839 0.9767975849699402 1.1521243569237738 0.5259727816125466 0.06172489910048438 0.23407314869573967 1.9862530215602998 0.05279926222418643 0.01696957290549339 28.48072190279317 -1.4545509931960732 0.17532677195383362 TEGT(ph)PPPPGQPAK ddPTM_BT-474_Trastuzumab_2h_R1 5 TEGTPPPPGQPAK 13 0 F8VWT9;J3KPF0;Q9Y4D8-4;Q9Y4D8;A0A494C150;Q9Y4D8-2 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 TEGT(1)PPPPGQPAK;T(0.001)EGT(0.999)PPPPGQPAK;T(0.018)EGT(0.982)PPPPGQPAK;TEGT(1)PPPPGQPAK;T(0.005)EGT(0.995)PPPPGQPAK 171.36 0.000282 1900020000.0 4021330.0 3425180.0 3148924.0 2921605.0 3175360.0 4100070.0 3903100.0 3645240.0 5012270.0 3945660.0 True False 3999679.6060917657 3539185.0457349694 3592265.128261931 3291479.893441088 3579723.274166734 3816641.811426626 3714292.141710058 3917266.318953662 3777063.219477001 3693844.600750524 1.082795850501968 0.9581304652111974 0.9725003394923668 0.8910715661325648 0.9691050006379254 1.033243740316296 1.0055355715168361 1.0604848720917341 1.022528998298837 1.0 21.81669174305048 2.7411579775459307 23.14426507480911 1.029160840696188 0.9690284400838389 0.2140341729935732 0.04647739059311743 110.72459969702832 986632.6249282797 0.014659766163449271 0.014888885092948171 551.0080928642467 -2.7411579775459307 -0.060132400612349146 TEHAEFLHCK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEHAEFLHCK 10 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4 P50570-2 DNM2 Dynamin-2 0 ;; 128.17 0.00019477 1742620000.0 1386910.0 1347050.0 1303210.0 1206380.0 1183760.0 1560320.0 1455400.0 611083.0 1993380.0 1212390.0 False True 1379443.030660187 1391885.7449410793 1486690.6402956152 1359107.5843070725 1334504.819304776 1452458.7509982008 1384996.7418320843 656685.1164765992 1502138.2089235126 1135014.2322206988 1.2153530691516121 1.226315675546906 1.3098431703246998 1.1974366009912725 1.175760427861566 1.279683293623913 1.22024614539175 0.5785699402127933 1.3234531922868682 1.0 20.114278957259298 1.9465027691916938 24.999104439208438 0.9152383198184105 1.2342694351961443 0.31685736216443294 0.17324675556975203 288.9398345630773 135020.19054964805 0.06704660641954431 0.043269249337015564 88.41028064868182 -1.9465027691916938 0.31903111537773376 TEIIPDRDGSDPYQEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEIIPDRDGSDPYQEPK 17 1 Q99447-3;Q99447;Q99447-4;I3L1L9;Q99447-2;I3L3V9 Q99447-3 PCYT2 Ethanolamine-phosphate cytidylyltransferase 0 144.68 4.585100000000001e-07 553380000.0 596060.0 548570.0 493850.0 493400.0 475240.0 604060.0 626600.0 629910.0 907160.0 660590.0 False True 592850.8791884916 566828.8208324321 563379.787378849 555864.3894105576 535758.9970318328 562302.7540042892 596288.9641555477 676917.0828181675 683602.5733212209 618430.5806404477 0.9586377157716462 0.9165601420379687 0.9109830674857832 0.8988306963004701 0.8663203499364471 0.9092415084357044 0.9641970866609311 1.0945724613377805 1.1053828751697257 1.0 19.238252134979486 1.9152894075117521 3.276599881154562 1.074884660156505 0.9087081601567683 0.8061621770296247 0.03415654674541062 0.09676405875055405 1.8440086829859943 0.017246367210590002 0.00949387115989289 82.27907630696534 -1.9152894075117521 -0.16617649999973672 TEIKEEEDQPSTSATQSS(ph)PAPGQSK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEIKEEEDQPSTSATQSSPAPGQSK 25 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 TEIKEEEDQPSTSATQS(0.209)S(0.791)PAPGQSK;TEIKEEEDQPSTSATQS(0.031)S(0.968)PAPGQSK;TEIKEEEDQPST(0.001)S(0.006)AT(0.018)QS(0.237)S(0.732)PAPGQS(0.006)K 233.87 1.3715000000000002e-38 1407270000.0 2151250.0 1314808.0 1252532.0 1107004.0 1159271.0 1968050.0 1939870.0 1731310.0 2750400.0 1836315.0 True False 2139667.909026342 1358570.589461779 1428877.618396688 1247150.5928963232 1306897.2903124506 1832003.335791382 1846031.0770769606 1860509.1436140453 2072600.7734718067 1719119.8045516347 1.2446298991851767 0.7902710362970363 0.8311681446595602 0.7254588014135488 0.760213038586513 1.0656635627958393 1.073823402062677 1.0822451923874419 1.2056174142048022 1.0 20.713238658299407 2.6480638030723274 6.30220782532763 1.091052435663735 0.8561251669663733 0.359870992162448 0.1429278969785057 0.25356938911825 14.644920525648951 0.04646328825105065 0.04375573139524146 444.69659393781416 -2.6480638030723274 -0.2349272686973617 TEKHESQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEKHESQR 8 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ; 118.18 0.0011637000000000002 59108000.0 84375.0 134233.0 160519.0 159934.0 141108.0 106104.0 176396.0 155768.0 194831.0 197336.0 False True 83920.73437494368 138700.8642594381 183118.6799438402 180181.62800159762 159077.2673873576 98769.28022195013 167863.05158184175 167392.19913387683 146817.51065164534 184741.84753215045 0.45425947340024864 0.7507820567578773 0.9912138608009331 0.9753157197924026 0.8610786863527146 0.534634039560319 0.908635773779564 0.9060870689016235 0.7947171288632632 1.0 17.495151175563606 4.667999128162826 3.2980355192425352 0.8641215246279722 0.42706793255510545 0.48737864362630134 0.1287498773462205 0.23869190376530952 4.24342413316651 0.03232565130868679 0.23613874053434858 46558.51588694613 -4.667999128162826 -0.43705359207286676 TEKPERPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEKPERPSR 9 2 Q02241;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 0 ; 68.551 0.03248 79541000.0 53900.0 59785.0 48927.0 54436.0 57414.0 71919.0 65684.0 53770.0 86448.0 63262.0 False True 53609.808388852995 61774.90758420431 55815.49631889231 61327.59201855116 64725.33258056066 66947.40880911575 62506.61398275298 57782.59043852762 65144.04874385205 59224.5649986769 0.9051954774180386 1.043062242594511 0.9424382656105494 1.0355093704769507 1.0928798308946068 1.130399333631431 1.0554170213685723 0.9756524246285052 1.0999498053773362 1.0 15.853908076534477 6.187593647712144 0.7052775221994853 1.0510749620148967 1.67588696530885e-11 0.38149060050034656 0.053820531300809146 22.67696727204931 1.7010266974034234 0.021056884754042614 29.94367748455349 1540258.619031795 -6.187593647712144 -1.0510749619981379 TEKPS(ph)KSPPPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEKPSKSPPPPPPR 14 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 TEKPS(0.621)KS(0.379)PPPPPPR;T(0.001)EKPS(0.54)KS(0.46)PPPPPPR 89.10700000000001 0.0032771 1446500000.0 1426780.0 990990.0 984550.0 933920.0 875170.0 1405810.0 1247840.0 1309880.0 1866350.0 1191320.0 True False 1419098.3750101607 1023974.5030838955 1123166.0821379898 1052154.1762430244 986617.7119610072 1308629.663620783 1187477.2119882838 1407629.8970358646 1406413.0503087232 1115288.937659634 1.272404241709823 0.9181248629907903 1.0070628733168334 0.9433915649256828 0.8846296942847514 1.1733548315890792 1.0647260740164182 1.2621212759356246 1.261030216313268 1.0 20.088986086579652 2.7114501855221977 23.59339789831315 1.1686716915712347 0.9969677262170765 0.25372977128414786 0.12418265460352043 442.5241784471774 385114.54623062996 0.0393088359048916 0.03707270168717818 514.5767806045969 -2.7114501855221977 -0.17170396535415822 TEKPSKS(ph)PPPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEKPSKSPPPPPPR 14 2 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 TEKPS(0.023)KS(0.977)PPPPPPR;TEKPS(0.003)KS(0.997)PPPPPPR;TEKPS(0.156)KS(0.844)PPPPPPR 132.13 2.7232e-05 2666740000.0 2887030.0 1940240.0 1977500.0 1668440.0 1760810.0 2655980.0 2480190.0 2469970.0 3519370.0 2323550.0 True False 2871486.5512591866 2004819.7155001517 2255914.8112618695 1879664.3329309945 1985038.7163614617 2472378.3541044164 2360213.734454115 2654291.7036535246 2652068.4206418986 2175259.0497087603 1.320066477435707 0.9216464198912638 1.0370786925648732 0.864110567972425 0.9125527907249636 1.1365903083751963 1.085026509725413 1.2202186695919737 1.219196592238969 1.0 21.052755789814604 2.6308399364997115 7.097665569693589 1.1491606338782365 0.9996478963592241 0.16737825601637424 0.1313351876377779 0.3894130625375507 22.63561983191177 0.04208114714606341 0.039612541642358834 427.4053326828048 -2.6308399364997115 -0.1495127375190124 TEKYEHK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEKYEHK 7 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 0 ;; 98.392 0.0067874 420220000.0 903940.0 1000040.0 837600.0 836950.0 830350.0 763760.0 1040680.0 933780.0 1597790.0 1044080.0 False True 899073.2874771757 1033325.726863054 955526.799450288 942907.7841855827 936090.1506299598 710963.0688976527 990338.3326163349 1003463.4052387627 1204036.063789091 977445.920518139 0.919818957350174 1.0571692051415933 0.9775751060925889 0.9646649133138252 0.957689966247691 0.7273681888413579 1.0131898981084924 1.0266178252673375 1.2318185983638232 1.0 19.898657358587155 1.6201933755288005 2.8731746909328217 1.1159741628221853 0.9425537667187229 0.32682059286671594 0.09730488315900468 0.24857881179902352 4.79077649261001 0.06426416983888535 0.02615837823965993 41.70550415672335 -1.6201933755288005 -0.17342039610346238 TELEETTAEAEEEIQALTAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TELEETTAEAEEEIQALTAHR 21 0 O14578-4;H7BYJ3;O14578;O14578-3 O14578-4 CIT Citron Rho-interacting kinase 0 228.08 1.8074e-25 18539000.0 16339.0 16808.0 12836.0 15552.0 14068.0 16719.0 18838.0 13183.0 18754.0 17005.0 False True 16251.03263943355 17367.444119349442 14643.197227487917 17520.881605417508 15859.47641243123 15563.254882292684 17926.733971851598 14166.782401917597 14132.327990725078 15919.72634128705 1.0208110548538307 1.0909386095606308 0.9198146320839375 1.100576808282058 0.9962153916741919 0.9776081917897121 1.1260704856062425 0.8898885632962623 0.8877243042849021 1.0 13.958527915841728 1.661632517667007 9.717176415297127 0.9172074057518617 1.0298057120707111 0.35782870406807155 0.06528904545545199 0.11169650470983811 16.39680381750365 0.02929006281524202 0.015668501282130452 45.88096224917631 -1.661632517667007 0.11259830631884948 TELFIAAEGIHTGQFVYCGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TELFIAAEGIHTGQFVYCGK 20 0 P62917;E9PKZ0;G3V1A1;E9PKU4 P62917 RPL8 60S ribosomal protein L8 0 278.82 1.2293e-44 86690000.0 177280.0 164550.0 150720.0 142000.0 140520.0 186700.0 164080.0 150800.0 223900.0 181530.0 False True 176325.54417765964 170026.94727742436 171940.065918275 159977.18544041208 158414.38907270686 173793.86844452668 156142.82355353088 162053.4617468843 168722.8451062893 169944.59998434794 1.0375472018169416 1.0004845537491867 1.0117418613719462 0.9413490364221407 0.932153119824325 1.0226501369301129 0.9187866138018612 0.9535664078870972 0.9928108637863682 1.0 17.37470499518916 3.782242662611997 9.623883601375104 0.9615795816194903 1.0150792436172011 0.342802710961006 0.03174991774609438 0.5771080706793654 123.74091264002264 0.007918319022613862 0.014252658610207499 6056.792042747314 -3.782242662611997 0.053499661997710835 TELFVHAFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TELFVHAFK 9 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 104.17 0.0033040999999999995 839590000.0 2255160.0 2405500.0 2377270.0 2063990.0 1949080.0 2611300.0 2512100.0 2161390.0 3878600.0 2625000.0 False True 2243018.4691318306 2485565.613344542 2711968.9523987393 2325290.92237434 2197283.7848977437 2430786.977339006 2390580.125846077 2322683.897116032 2922771.0005772836 2457470.252624432 0.9127347387975177 1.0114326351214653 1.1035612534892407 0.9462132531985148 0.8941242656146805 0.9891419742489538 0.9727809007222284 0.9451523958979946 1.1893413551826062 1.0 21.228742522349457 1.2599435115197315 24.999949663941187 1.0946707954463322 0.9733374106568945 0.33399164530508585 0.0693269194368879 229.60749225930343 268448.352771827 0.0457256949780785 0.016663126671461394 18.194641863621044 -1.2599435115197315 -0.12133338478943767 TELSQSDMFDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TELSQSDMFDQR 12 0 B7Z7P8;P62495-2;P62495 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 162.49 0.00014552 386300000.0 307310.0 358200.0 353210.0 373920.0 318230.0 369810.0 393490.0 319560.0 371490.0 365290.0 False True 305655.47710535105 370122.4704635273 402938.8978436435 421258.2336611184 358754.7042030136 344245.9051391023 374455.3854222261 343407.1898928005 279941.2672109666 341976.8794594968 0.8937898889201145 1.0823026136986666 1.178263567058974 1.2318324979364914 1.0490612838213933 1.0066350265643447 1.0949728122382496 1.004182477001265 0.818597057360781 1.0 18.383539264411517 1.4991834673061255 4.099250507964305 0.9075463534554014 1.0820370177137886 0.3246920847070929 0.0954953336911144 0.21045231728691977 7.494513884392647 0.06408145030544812 0.02545296381552209 31.563377337540206 -1.4991834673061255 0.17449066425838722 TEMDKS(ph)PFNSPS(ph)PQDSPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEMDKSPFNSPSPQDSPR 18 1 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 2 TEMDKS(1)PFNSPS(0.994)PQDS(0.006)PR;TEMDKS(1)PFNS(0.098)PS(0.9)PQDS(0.001)PR;TEMDKS(1)PFNS(0.064)PS(0.936)PQDSPR 197.07 1.0715999999999999e-15 808130000.0 1064640.0 782790.0 742790.0 692500.0 710130.0 1123860.0 1018120.0 956630.0 1514110.0 1049250.0 True False 1058908.0965326242 808844.6919434521 847368.37555358 780170.4289963762 800560.8462297263 1046170.2034818738 968869.6460039057 1028018.5882687125 1140977.8785345394 982285.9666918797 1.0780038934067142 0.82343097567347 0.8626493753212499 0.7942396160089882 0.8149977434023994 1.065036291829702 0.986341736375246 1.0465573398455952 1.1615536790952015 1.0 19.905783562794518 2.7316789082716237 24.75422046438679 1.0485762914218864 0.8666824866531148 0.5145528649108643 0.0858688997520743 384.99119993097423 1384849.641007892 0.02736018782824991 0.02632855313263045 539.1118875959744 -2.7316789082716237 -0.1818938047687716 TEMDKS(ph)PFNSPSPQDSPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEMDKSPFNSPSPQDSPR 18 1 P08651-3;P08651-2;P08651-6;A0A286YEX4;P08651;P08651-5;P08651-4 P08651-3 NFIC Nuclear factor 1 C-type 1 TEMDKS(1)PFNSPSPQDSPR 196.4 1.1857e-15 824610000.0 485130.0 424490.0 351780.0 368070.0 373690.0 478990.0 449800.0 451850.0 690210.0 452670.0 True False 482518.1139830102 438618.89304037654 401307.56627342675 414667.6242609326 421277.2064658395 445878.548721178 428041.4555971358 485569.34144780907 520116.99384016066 423780.2130497149 1.1386046330728625 1.0350150373559817 0.9469709861756763 0.9784968988447951 0.9940936209223583 1.0521457467597022 1.0100553126743579 1.1458046565068045 1.2273272272368796 1.0 18.692956702067892 1.727229678624451 6.142424424373456 1.1393384735668557 1.0180947721258375 0.29387640382189895 0.07109000381765786 0.14877395481118624 14.600650579362446 0.035144537616846085 0.018148215105298196 53.36170266846999 -1.727229678624451 -0.12124370144101815 TEMDWVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEMDWVLK 8 0 P52597;A0A1B0GW42 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 103.74 0.010969 333620000.0 447060.0 358340.0 324020.0 302630.0 323820.0 411900.0 366560.0 360550.0 502740.0 452130.0 False True 444653.0786330352 370267.1302788957 369639.1995676716 340942.926970647 365056.5575684879 383426.32250830525 348828.09240481636 387456.071835803 378846.4633708611 423274.6763120319 1.0505071612298473 0.8747679721948217 0.8732844657476719 0.8054886012583207 0.8624578270290224 0.9058569859389579 0.8241175575258497 0.9153773979858318 0.8950369218204327 1.0 18.691234652079878 0.5253356023874409 1.3410819944829377 0.9998843284489467 0.8825057052966638 0.2139755973910199 0.06293682198850879 2.9232420077089536 6.663470078996606 0.05846113857326284 0.017312673620249172 3.3522438476170446 -0.5253356023874409 -0.11737862315228287 TEMEDLMSSKDDVGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TEMEDLMSSKDDVGK 15 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;; 206.95 3.3171e-09 934380000.0 872400.0 754270.0 634580.0 673840.0 595170.0 924410.0 1024500.0 806020.0 1655590.0 952720.0 False True 867703.095332751 779375.4209841568 723923.3481317617 759148.0749096279 670961.3716510305 860507.7125270766 974941.0210299375 866169.3052866288 1247592.028269412 891916.5939353717 0.9728522837591973 0.8738209674352468 0.8116491531317077 0.851142449945982 0.7522691877393732 0.9647849567752621 1.0930854158999779 0.9711326273960896 1.3987765635850615 1.0 19.766549279714848 2.173861011628983 1.4445380426429544 1.1346272329985265 0.8514620900031458 0.5084646447892938 0.12057710894288108 0.3460285448602488 1.392764269561192 0.07210484875034263 0.03999274065971602 149.2316743214147 -2.173861011628983 -0.28316514299538076 TEMQDNTYPEILR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEMQDNTYPEILR 13 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ; 155.47 0.00010814 195158000.0 245900.0 293740.0 256570.0 246940.0 249650.0 269200.0 266320.0 229880.0 301530.0 264950.0 False True 244576.10172205835 303516.95833042066 292692.82585358195 278202.57868067134 281441.4477085201 250590.8376286375 253437.0841588026 247034.81290698776 227221.97179499484 248040.66416489263 0.9860322804145891 1.2236580616823718 1.180019521553149 1.1216006843770088 1.1346584990653923 1.0102812717113576 1.02175619071203 0.9959448130761487 0.9160674220898799 1.0 17.920217132064582 2.6268041435216025 1.6867258346218135 0.9805294847488822 1.1412576289631788 0.5522941505702043 0.0629006733371795 0.26608670299205395 1.517102597929661 0.025358760022856443 0.0225759126473639 423.45195622504815 -2.6268041435216025 0.1607281442142966 TENDHINLK ddPTM_BT-474_Trastuzumab_2h_R1 5 TENDHINLK 9 0 A8MUA9;A8MU27;P55854;P55854-2 A8MUA9 SUMO3 Small ubiquitin-related modifier 3 0 ;;;; 167.67 5.9805e-05 5606260000.0 9721020.0 8741400.0 8211550.0 7454780.0 7449450.0 10362470.0 10029380.0 8972760.0 13033680.0 9719970.0 False True 9668683.108426848 9032352.214712104 9367664.863927906 8398554.38364418 8398093.301150547 9646136.83953055 9544220.573447766 9642352.913952066 9821704.206364175 9099633.192915011 1.0625354784580658 0.9926061878785079 1.0294552170763966 0.9229552670522266 0.9229045966038847 1.0600577666186641 1.0488577254827054 1.0596419338594458 1.0793516615605308 1.0 23.11737696063241 2.6978570053717403 24.72755891215427 1.0536732812735474 0.9853548049626807 0.3400793062346663 0.04403157483670587 507.5006251046465 308307.5570302766 0.014739827940936017 0.01389704698378435 498.72025314011216 -2.6978570053717403 -0.06831847631086674 TENNDHINLK ddPTM_BT-474_Trastuzumab_2h_R1 9 TENNDHINLK 10 0 P61956;P61956-2 P61956 SUMO2 Small ubiquitin-related modifier 2 0 ;;;;;;;; 189.57 9.962799999999998e-07 23081859900.0 29751472.0 26658320.0 25092809.0 23839590.0 24126969.0 31517656.0 31628728.0 28840744.0 40102592.0 30303951.0 False True 29591293.380451314 27545626.06590524 28625658.396594286 26857679.649671778 27199395.49040086 29338914.625301845 30098725.593165614 30992986.767610613 30219845.548801746 28369926.90266229 1.0430514495853147 0.9709445554940892 1.0090141752853088 0.94669541242813 0.9587404149373545 1.034155453623979 1.0609377210041768 1.0924591689625458 1.0652070289954063 1.0 24.757859097611878 2.509586809161196 3.739042877049122 1.0646976955989231 0.9842308730061533 0.4772837996902879 0.03369460688785796 0.16986412456490316 5.045337223521778 0.011590991242274027 0.01031157813228815 323.2859340459901 -2.509586809161196 -0.08046682259276983 TENSWGEPS(ph)SPSTLVDNGTAAWGKPPSSGSGWGDHPAEPPVAFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TENSWGEPSSPSTLVDNGTAAWGKPPSSGSGWGDHPAEPPVAFGR 45 1 A0A1B0GU24;Q9HCJ0-2;Q9HCJ0;K7ELY5 A0A1B0GU24 TNRC6C Trinucleotide repeat-containing gene 6C protein 1 T(0.012)ENS(0.011)WGEPS(0.41)S(0.379)PS(0.092)T(0.092)LVDNGT(0.006)AAWGKPPSSGSGWGDHPAEPPVAFGR 49.386 0.014266 305640000.0 35612.0 36532.0 37001.0 37885.0 35041.0 40666.0 38013.0 33728.0 37663.0 36580.0 True False 35420.26894886515 37747.945535939674 42210.41918154261 42681.23711556344 39503.263645721 37854.855137467195 36174.16596623819 36244.954627313695 28381.458308343776 34245.43308228639 1.0343063515580548 1.1022767749859461 1.2325853517494612 1.2463336939850385 1.153533773417345 1.1053986394772093 1.0563208787378264 1.058387976587207 0.8287662252700263 1.0 15.063623984882602 1.7367926124128055 1.3500232853627756 0.9278385251097933 1.154422109096907 0.5632489591951617 0.07537984545762394 0.31093121640362903 1.0772825973944855 0.06339846980058815 0.024581944799171866 54.549730888321356 -1.7367926124128055 0.22658358398711365 TENWLSEWWLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TENWLSEWWLK 11 0 P43155-2;P43155;P43155-3 P43155-2 CRAT Carnitine O-acetyltransferase 0 ; 156.51 7.218699999999999e-05 459440000.0 707460.0 674010.0 657030.0 606150.0 661450.0 987130.0 770810.0 735990.0 820410.0 652010.0 False True 703651.1139661951 696444.0154023515 749534.112992864 682888.5278500409 745681.7367786923 918892.0265540753 733522.9755198503 790913.3110814946 618230.9484307754 610398.1635861553 1.1527739694237753 1.1409667606315648 1.2279429357868148 1.118759145404365 1.221631684469251 1.5053977573515052 1.2017122908927567 1.2957334380477052 1.012832254931112 1.0 19.219391096194556 1.2281979038327875 24.79642605552997 1.006415845388589 1.2361131489811088 0.43345481682945397 0.1036249125244858 201.84633196040386 482970.00044315826 0.0986686004141252 0.025767574838871186 16.912114249131804 -1.2281979038327875 0.22969730359251983 TEPS(ph)SPLSDPSDIIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 TEPS(0.751)S(0.248)PLSDPSDIIR 169.62 1.2449e-06 96568000.0 98169.0 112300.0 86389.0 89866.0 90965.0 100360.0 93847.0 93869.0 114690.0 108770.0 True False 97640.46901160137 116037.83761321651 98551.82029335113 101243.02638583147 102548.85355820355 93422.3494220285 89307.26207964533 100873.9814371237 86426.1862672635 101828.20547731782 0.9588744940943766 1.139545149296222 0.9678243845248112 0.994253271097695 1.0070770969350555 0.9174506118821694 0.8770385539155796 0.9906290792838662 0.8487450590152538 1.0 16.635777704476062 3.153554275427442 1.2384344514550407 0.9278746313638385 1.0337461624697266 0.2982274959758695 0.06394618682313545 0.5205960873465676 1.6911842386175315 0.023632266721002358 0.03329154406109607 1424.1452163506394 -3.153554275427442 0.1058715311058881 TEPSS(ph)PLSDPSDIIR ddPTM_BT-474_Trastuzumab_2h_R1 5 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3;Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 TEPS(0.022)S(0.978)PLSDPSDIIR;TEPS(0.029)S(0.971)PLSDPSDIIR;TEPS(0.008)S(0.992)PLSDPSDIIR;TEPS(0.25)S(0.75)PLSDPSDIIR;TEPSS(0.999)PLSDPSDIIR 283.66 6.842000000000001e-34 4496250000.0 2879580.0 2945430.0 2592090.0 2537410.0 2582470.0 3050450.0 2866640.0 2667950.0 3155090.0 2858920.0 True False 2864076.6612314135 3043466.8569999635 2957033.741149826 2858645.8458334883 2911332.2470010854 2839579.571486912 2727969.6715717562 2867045.976575592 2377560.3455399806 2676461.277955443 1.0700982991314898 1.1371234405920032 1.1048296366195565 1.0680691962101603 1.0877542936937465 1.0609455084872648 1.0192449612630528 1.0712077175148738 0.8883223400699471 1.0 21.351895349753743 1.8195466238683702 0.8670634490073671 0.9642394085420622 1.097581505456024 0.5719337403813547 0.042854260256134175 0.4210648462436409 0.5925310918402877 0.03635287815364694 0.016286624749342227 66.00040854789928 -1.8195466238683702 0.13334209691396182 TEPTS(ph)PTPSAFK ddPTM_BT-474_Trastuzumab_2h_R1 4 TEPTSPTPSAFK 12 0 Q86XN7-2;Q86XN7 Q86XN7-2 PROSER1 Proline and serine-rich protein 1 1 TEPT(0.002)S(0.985)PT(0.013)PSAFK;TEPT(0.001)S(0.995)PT(0.004)PSAFK;TEPT(0.001)S(0.932)PT(0.067)PSAFK;TEPT(0.011)S(0.979)PT(0.01)PSAFK 252.96 4.737100000000001e-21 1622470000.0 4592570.0 4183520.0 3937530.0 3537890.0 3545650.0 4883970.0 4445970.0 3951110.0 5438900.0 4291620.0 True False 4567844.113402492 4322765.934208753 4491899.998375703 3985786.51125197 3997167.5107859503 4546352.649528737 4230901.445845267 4245961.891530045 4098555.9725261116 4017725.137359267 1.1369229992683876 1.0759237594461177 1.118020731833362 0.9920505696593548 0.99488326705524 1.131573836959121 1.0530589577927458 1.056807458541276 1.02011855774185 1.0 21.93794743838974 3.762876285792742 24.729585561058105 1.042059309519719 1.1068526339634506 0.3972284419493669 0.041609778933877566 800.8790634746695 814508.482737539 0.01088976216383103 0.019619733606696853 5792.636624330861 -3.762876285792742 0.06479332444373154 TEQELPRPQS(ph)PSDLDSLDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 1 TEQELPRPQS(0.886)PS(0.114)DLDSLDGR;TEQELPRPQS(0.975)PS(0.025)DLDSLDGR;TEQELPRPQS(0.97)PS(0.03)DLDSLDGR;TEQELPRPQS(0.75)PS(0.25)DLDSLDGR 207.6 3.9389e-22 1448570000.0 893080.0 961740.0 874490.0 901070.0 946710.0 955190.0 970850.0 960910.0 1104410.0 1001330.0 True False 888271.7565105165 993750.9345158918 997610.590796658 1015145.3696112109 1067267.906910207 889159.9635754022 923886.2764928406 1032617.9836021104 832242.9538358046 937424.2621182568 0.947566424729959 1.060086638114482 1.0642039374385306 1.0829092126518371 1.1385110776827432 0.948513922144714 0.9855583152981074 1.101548173362559 0.8877975399902936 1.0 19.838342609113703 2.7221131942763503 24.92259514226358 1.0001367699055557 1.060390655736671 0.2164789149871198 0.06718309024921686 1519.7280595086079 2302824.8492255122 0.02220689627444217 0.020982065690564197 527.3672962353759 -2.7221131942763503 0.06025388583111524 TEQFYR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEQFYR 6 0 O76021;J3QSV6;I3L3U9;I3L3C4;I3L234 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 0 ;; 126.24 0.040887 860670000.0 652380.0 668810.0 658890.0 652450.0 583300.0 714040.0 705880.0 648370.0 845530.0 668560.0 False True 648867.6585662318 691070.9365458172 751655.9848254535 735050.1031027952 657579.7975100332 664680.0954693614 671733.8876765369 696754.6617561489 637160.4610215304 625891.9284169872 1.0367087816699525 1.104137799465926 1.20093573778232 1.174404189812596 1.05062833958123 1.0619726270483751 1.073242611349045 1.1132188004379422 1.0180039589790586 1.0 19.2555540456573 3.2230355192091875 24.99914796936496 1.063912834092398 1.1324023665246548 0.3420371012416801 0.050307029226486236 310.6495190868548 500219.58372874284 0.015276615007547855 0.018319903216780203 1671.22729171942 -3.2230355192091875 0.06848953243225675 TES(ph)PATAAETASEELDNR ddPTM_BT-474_Trastuzumab_2h_R1 6 TESPATAAETASEELDNR 18 0 Q9NTJ3;Q9NTJ3-2;C9JR83;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4 1 TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;T(0.002)ES(0.998)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR 374.06 9.601399999999999e-108 4066490000.0 578071.0 549805.0 528721.0 491046.0 482003.0 647085.0 610902.0 550587.0 791700.0 662339.0 True False 574958.7299657261 568104.9270608587 603160.3210746846 553212.3732519195 543383.2249943917 602353.5370242457 581350.3363877323 591674.597764136 596596.143236486 620067.9579630535 0.9272511546226113 0.9161978453573133 0.9727326066905455 0.8921802298400371 0.876328502410326 0.9714314847085466 0.9375590673923709 0.9542092768473464 0.9621463834324333 1.0 19.24206681452257 1.2533328505413115 0.6895652826614752 0.9985280831677273 0.9221354811010419 0.42523577937676593 0.027770283304124642 0.6506158427941625 0.7261308972620872 0.027218121559507247 0.011593710874373565 17.919787302857465 -1.2533328505413115 -0.07639260206668541 TESALSYYEFLLHIQQQVNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TESALSYYEFLLHIQQQVNK 20 0 O95486 O95486 SEC24A Protein transport protein Sec24A 0 ; 238.81 1.2115999999999999e-29 316980000.0 263550.0 259530.0 272700.0 235360.0 246980.0 305990.0 292310.0 317340.0 406980.0 357580.0 False True 262131.0760831577 268168.299160802 311093.7896491088 265156.55186799524 278431.4390348499 284837.63152298203 278169.8485673608 341021.5222198686 306685.2322526019 334758.9382603596 0.7830442928436003 0.8010788316942069 0.9293068954805767 0.792082067310684 0.8317371314468059 0.8508738646477869 0.8309557020730347 1.0187077423296111 0.9161375461588921 1.0 18.352763051306006 1.7581577982160572 13.276165145994433 0.9751055648488244 0.8331599674809074 0.6854471394997776 0.04560029956032804 0.15957072265467015 106.95118155054567 0.020529108352292495 0.011312086954987125 57.30041906982877 -1.7581577982160572 -0.141945597367917 TESDDLHTFLLEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 TESDDLHTFLLEIK 14 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 ; 208.82 7.5066e-09 267230000.0 845680.0 780110.0 680490.0 698870.0 640740.0 936480.0 922710.0 844530.0 1290280.0 933180.0 False True 841126.9528438818 806075.4897635459 776297.0770748883 787346.8703432454 722334.4410364797 871743.3418368003 878074.9922054996 907553.1170364468 972307.7828662035 873623.6534644075 0.962802402966474 0.9226804775340098 0.8885943895823278 0.901242620001157 0.8268256453130803 0.997847686907113 1.0050952589521127 1.0388376201096319 1.112959543861316 1.0 19.73665239236334 2.532289777440942 4.5862562551416275 1.0374516341806594 0.9009604770027777 0.7050707744986715 0.04277603085903981 0.12228502085414109 5.380746809985168 0.014803221946250552 0.013538407512593675 340.63539850638784 -2.532289777440942 -0.13649115717788174 TESSTEGKEQEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TESSTEGKEQEEK 13 1 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 ;; 203.32 7.9193e-08 2487010000.0 2768040.0 2098850.0 1707220.0 1860990.0 1929720.0 2868780.0 3047290.0 2839190.0 5430850.0 2997170.0 False True 2753137.1801981544 2168708.9534683805 1947581.7365777444 2096591.1431883988 2175458.403653456 2670467.9909817344 2899880.9409217346 3051064.774914697 4092489.787161641 2805888.044593662 0.9811999397135082 0.7729135728159263 0.6941052905978597 0.7472112607016076 0.7753190323630669 0.9517371857110077 1.0334984485604037 1.0873793702473045 1.458536378544034 1.0 21.42002601565484 2.147715846523887 1.3323954733637968 1.205456920115056 0.7849679684407068 0.6250014161185107 0.1308253298262626 0.2730461718150203 0.9233958317424501 0.08341336348691714 0.044354443556171165 140.51278656219768 -2.147715846523887 -0.4204889516743492 TET(ph)PPPLASLNVSK ddPTM_BT-474_Trastuzumab_2h_R1 4 TETPPPLASLNVSK 14 0 K7ELG9;Q3MHD2;Q3MHD2-2 K7ELG9 LSM12 Protein LSM12 homolog 1 T(0.016)ET(0.984)PPPLASLNVSK;T(0.026)ET(0.974)PPPLASLNVSK;TET(1)PPPLASLNVSK;T(0.001)ET(0.999)PPPLASLNVSK 126.07 0.00097888 1019060000.0 2048610.0 1384010.0 1195770.0 1015550.0 1090090.0 1633860.0 1514640.0 1534080.0 2295520.0 1593050.0 True False 2037580.5113819696 1430075.936198287 1364124.0221808387 1144118.5258733137 1228906.5000303648 1520915.1038927396 1441371.0767133106 1648560.839500397 1729819.8543920896 1491380.185121278 1.3662381542344784 0.9588942849485386 0.9146722182512497 0.7671541685263001 0.8240061872153887 1.0198037489475293 0.9664679007359208 1.1053927468979596 1.1598785283924244 1.0 20.508216648053512 1.7553353332802173 4.818855862982189 1.099788400335596 0.9583284445449823 0.09565532021865186 0.15503923959010046 0.38402204724308203 20.02230642437335 0.08144767397721278 0.04241960770955005 56.92923308142501 -1.7553353332802173 -0.14145995579061366 TET(ph)QEKNPLPSK ddPTM_BT-474_Trastuzumab_2h_R1 4 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 TET(1)QEKNPLPSK;TET(1)QEKNPLPSK;T(0.008)ET(0.992)QEKNPLPSK;T(0.018)ET(0.982)QEKNPLPSK 182.57 2.7015e-05 2383320000.0 4777410.0 3280250.0 1851577.0 2894440.0 3108740.0 4379590.0 2237308.0 2055542.0 6701300.0 2293763.0 True False 4751688.955380153 3389431.1382970056 2112262.9474042095 3260875.8072263836 3504619.6120544113 4076839.2517459285 2129080.864693461 2208936.981870781 5049854.4078194555 2147373.0815506983 2.212791524772575 1.5784081338345597 0.9836497279172679 1.5185418105695836 1.6320497086251984 1.8985239624974206 0.991481584167001 1.0286694011622914 2.351642782153517 1.0 21.034141434085626 4.6949634389250345 3.8710162315653576 1.4049770641645893 2.2593158628497063 0.2263485289757975 0.4317668790692143 0.3119609265561626 8.825376392169732 0.10313229309516006 0.6869963724298495 49540.84830929211 -4.6949634389250345 0.854338798685117 TET(ph)QEKNPLPSKETIEQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 T(0.113)ET(0.887)QEKNPLPSKETIEQEK;T(0.016)ET(0.636)QEKNPLPS(0.25)KET(0.098)IEQEK 165.24 1.0589e-09 672440000.0 919830.0 686710.0 396840.0 667870.0 694640.0 995560.0 651840.0 568250.0 2069560.0 658550.0 True False 914877.7374827194 709566.7272250387 452711.6226048859 752422.2735217469 783098.2865461495 926739.2804961602 620308.0089293857 610655.7005150329 1559544.6686832136 616520.7751869789 1.4839365911152866 1.1509210326445865 0.7343006770008476 1.2204329583111806 1.270189615765423 1.503176077424314 1.0061429134180566 0.9904868174634225 2.529589806945652 1.0 19.233789985049075 TETGQELECLQDHLDDLVVECR ddPTM_BT-474_Trastuzumab_2h_R1 6 TETGQELECLQDHLDDLVVECR 22 0 Q92896;Q92896-3;Q92896-2;H3BM42 Q92896 GLG1 Golgi apparatus protein 1 0 ;;;;; 283.73 7.6109e-46 500700000.0 304538.0 403258.0 386725.0 343091.0 340256.0 427539.0 349448.0 298329.0 499826.0 372884.0 False True 302898.4012453523 416680.19875539077 441172.5185260414 386526.2854220869 383585.58474468277 397984.2352485509 332543.8652190045 320591.8248639665 376650.57962526166 349086.22387794673 0.8676893573183702 1.1936311726270739 1.2637924052834906 1.1072516157418764 1.0988276205330814 1.1400743083682978 0.9526123990939097 0.91837432397807 1.0789614538239483 1.0 18.413223898829266 2.2390315028979733 24.999853232152958 0.9730061653020297 1.121695568434652 0.2514856916091798 0.10310697985540215 15.153229870885546 804560.320312575 0.03715939718029075 0.029329894942353725 173.39297691691132 -2.2390315028979733 0.14868940313262224 TETQEKNPLPSK ddPTM_BT-474_Trastuzumab_2h_R1 7 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 ;;;;;; 205.72 8.9836e-08 16236680000.0 13812000.0 12127040.0 12215060.0 11128880.0 11150340.0 16063620.0 16005380.0 14239610.0 20925450.0 15661840.0 False True 13737637.726657474 12530681.195449503 13934834.272795154 12537795.066930225 12570269.705756934 14953179.759094093 15231138.622910826 15302242.005474458 15768653.234164337 14662287.962424168 0.9369368383613563 0.8546197720002875 0.9503860726584215 0.8551049535421419 0.857319794698579 1.0198394546209575 1.0387968550300255 1.0436462607125392 1.0754565231958007 1.0 23.805606909190228 2.6594471563110424 5.185696619340135 1.0409286443116723 0.8903619053226016 0.8078052969723029 0.03531477318812957 0.08807502125386103 4.187424105260036 0.011154418495070135 0.01053074390829336 456.5067004156574 -2.6594471563110424 -0.1505667389890707 TETQEKNPLPSKETIEQEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 ;;; 216.04 2.2066e-19 10743000000.0 2296520.0 2341370.0 2224770.0 2519600.0 2216100.0 3145250.0 3646040.0 2748370.0 6103770.0 3626300.0 False True 2284155.791487361 2419301.085061948 2537998.277952501 2838581.1016595936 2498307.1991462056 2927826.2706221063 3469667.115974614 2953467.3253400763 4599577.669827662 3394866.4293683753 0.6728264098191146 0.712635131719178 0.747598861621399 0.8361392592956065 0.7359073622260369 0.8624275303717434 1.0220334696997653 0.8699804209644788 1.354862633191559 1.0 21.69492338223933 2.150984131090469 0.8250375283015777 1.116534944235855 0.7239002661753023 0.6362970969240211 0.11625565087326266 0.4053726152472114 0.5192713379850776 0.09138829139676466 0.05093664409036223 141.57420484848168 -2.150984131090469 -0.39263467806055263 TEVEVEELPPIDHGIPITDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEVEVEELPPIDHGIPITDRR 21 1 J3KT25;A0A3B3ITH3;Q9P2X3-2;Q9P2X3 J3KT25 IMPACT Protein IMPACT 0 ;; 95.666 0.00090389 467490000.0 240112.0 308235.0 257790.0 279043.0 285794.0 294871.0 304412.0 266211.0 340142.0 296365.0 False True 238819.26367095092 318494.4156430081 294084.5912491519 314369.81518907676 322188.17186624755 274487.26182167145 289686.42859323137 286077.0166120672 256318.56176928716 277450.731969158 0.8607627811106247 1.1479314305013713 1.0599524793534982 1.133065366084609 1.1612446273959107 0.9893189319543191 1.044100430145679 1.0310912304382318 0.9238345127082962 1.0 18.081872083541846 1.6911118969952925 1.3199925408511044 0.9683942462186146 1.071419760486736 0.14307653757324357 0.08537394007583336 0.7402154737072845 2.458893500322621 0.06888779074552091 0.025946453366861716 49.10343760179471 -1.6911118969952925 0.10302551426812134 TEVHIRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEVHIRPK 8 1 P28838-2;P28838;H0Y9Q1 P28838-2 LAP3 Cytosol aminopeptidase 0 ; 114.28 0.0016140999999999998 315505000.0 648980.0 749930.0 685780.0 673200.0 647320.0 758000.0 732160.0 686000.0 944040.0 736540.0 False True 645485.9637884571 774890.9667077416 782331.8630933834 758427.0509752495 729752.3650337646 705601.2441400707 696742.6236771888 737192.8034374166 711393.9914879014 689533.3866163816 0.9361199563605321 1.123790351197089 1.1345815565688189 1.0999134569784024 1.0583278187800915 1.0233025083854692 1.0104552400227982 1.0691183599606469 1.0317034755616292 1.0 19.39526088192628 2.9835375009090805 4.831153491905236 1.0333047512590678 1.0815286111024263 0.13330824155878418 0.05395501590311761 0.3786680016715397 23.942167162992757 0.016381351796328457 0.018426309902728893 962.8031465058654 -2.9835375009090805 0.04822385984335842 TEVLS(ph)PNSK ddPTM_BT-474_Trastuzumab_2h_R1 4 TEVLSPNSK 9 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 TEVLS(0.991)PNS(0.009)K;TEVLS(1)PNSK;TEVLS(0.994)PNS(0.006)K;TEVLS(0.97)PNS(0.03)K 162.49 6.686100000000001e-05 2473880000.0 4282710.0 3585260.0 3238140.0 3059240.0 3169700.0 4124100.0 4191940.0 3779630.0 5131600.0 3826730.0 True False 4259652.365213814 3704593.2117645624 3694041.965582564 3446539.4703290574 3573342.5067161857 3839010.6740871645 3989159.8474341044 4061685.1831722492 3866985.9399170727 3582504.8151716194 1.1890151123243518 1.0340790600129575 1.0311338452187402 0.9620474076498768 0.9974424853759771 1.0715995852480822 1.1135113707427087 1.1337556800960433 1.0794084416971887 1.0 21.772537212909864 2.4917084854150606 8.528988575305243 1.0973359458457892 1.0368339294264173 0.052893595583513475 0.06459722570953362 0.3650668629610974 175.89457497414114 0.02186724617993801 0.019643824550915 310.2476391674318 -2.4917084854150606 -0.06050201641937192 TEVNYTQLVDLHAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TEVNYTQLVDLHAR 14 0 A0A087X2I2;A0A087WT12;P36969-2;P36969;K7ERP4;K7EKX7;K7ENB4;K7EJ20;A0A087X247;R4GNE4 A0A087X2I2 GPX4 Glutathione peroxidase;Phospholipid hydroperoxide glutathione peroxidase, mitochondrial 0 ;; 185.12 1.2139e-06 612560000.0 458010.0 530260.0 474780.0 486530.0 509100.0 565220.0 548690.0 489800.0 635440.0 564880.0 False True 455544.1250496944 547909.3835510615 541624.8971382604 548124.6481149556 573930.867327889 526147.6717847642 522147.76850065024 526351.3631540048 478844.3264597601 528828.8747819014 0.8614206726846545 1.0360806863600807 1.0241969055899913 1.0364877453807948 1.0852865543028234 0.9949299232228138 0.9873662226102791 0.9953150976695092 0.9054806749295681 1.0 19.01244142656108 4.745120421332252 24.585740312623898 1.0089902841204827 0.8614205878885515 0.4989439909023248 0.04380608795848438 515.8175481380968 1933186.4114348812 0.010813330570370802 0.1026923474758235 55605.84199776566 -4.745120421332252 -0.14756969623193128 TEVSETARPS(ph)SPDTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TEVSETARPSSPDTR 15 1 O75132 O75132 ZBED4 Zinc finger BED domain-containing protein 4 1 TEVSETARPS(0.5)S(0.5)PDTR 146.76 2.3181e-06 483860000.0 500110.0 552620.0 490150.0 521170.0 522880.0 575600.0 549780.0 565000.0 674800.0 595210.0 True False 497417.4633274445 571013.6226341557 559158.8595398256 587150.0685632353 589465.6686474304 535810.1268166561 523185.0410364461 607163.1690118675 508504.5818567397 557223.188215081 0.8926718662243607 1.0247484934416473 1.0034737810013703 1.053707169732145 1.057862775839659 0.9615718407788878 0.9389146972011929 1.0896229407766682 0.9125689537178117 1.0 19.087895769753633 4.743127755359977 24.22084845527414 1.0098957929209258 0.8926717929898752 0.28470101001156733 0.052709100871074506 373.29809356339644 1979595.692169319 0.012192688380634024 0.09684855859545102 55351.29108266747 -4.743127755359977 -0.1172239999310506 TEWLDGK ddPTM_BT-474_Trastuzumab_2h_R1 14 TEWLDGK 7 0 P62937;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37;P62937-2 P62937;P62937-2 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D 0 ;;;;;;;;;;;;; 170.06 0.0023005 97180833000.0 74199680.0 65089490.0 58992040.0 52841380.0 52497040.0 70871270.0 71536410.0 67736500.0 90993310.0 66312840.0 False True 73800197.16723952 67255954.32722236 67297606.46399626 59531093.2900513 59182226.86966589 65972105.91792471 68075920.55267577 72791341.58897749 68569227.99838568 62080697.77792142 1.1887784739669285 1.0833633759693577 1.0840343113528952 0.9589308016963547 0.9533112382430993 1.0626830605854956 1.0965714463487637 1.1725277613562075 1.1045176754242583 1.0 25.88764143750799 -0.2951449960494573 8.100980041905915 0.999999987415487 1.0786848276487584 0.09545029669787564 0.07230525590231837 0.0 0.0 0.07797220541524136 0.01837822520132432 0.5068214696987406 0.2951449960494573 0.07868484023327138 TEWLDGKHVVFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TEWLDGKHVVFGK 13 1 P62937;P62937-2 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed 0 ; 144.27 2.4772e-05 5734000000.0 13721500.0 14239400.0 14902000.0 15896500.0 15539800.0 19883600.0 20987000.0 17500900.0 27746000.0 20505800.0 False True 13647624.968601959 14713349.821100911 17000072.069494005 17908995.270095117 17518701.41838919 18509093.53295977 19971778.631874405 18806906.025769506 20908370.07735193 19197102.288101383 0.7109210944331393 0.7664359756118213 0.8855540703156473 0.932900966058578 0.9125700928961301 0.9641608017284958 1.0403538165368413 0.9796742103846722 1.0891419842207757 1.0 24.19438522359106 5.308197149777495 0.3987636641129376 1.0356826154064303 0.26111631636610644 0.9001280188305051 0.03505482558532263 2.404167918640914 0.21389786644328884 0.026329213446410087 0.9727764966788502 203327.98172527747 -5.308197149777495 -0.7745662990403238 TEYGDLELCIEVVDNVQDAIDHIHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEYGDLELCIEVVDNVQDAIDHIHK 25 0 P54886-2;P54886 P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase 0 80.41199999999998 0.013534 15703000.0 18256.0 17935.0 15444.0 14492.0 22009.0 35563.0 18980.0 2127.8 30182.0 11580.0 False True 18157.71172443227 18531.955633063546 17618.380958345548 16326.68571410177 24811.715692436683 33104.613516297286 18061.864889358934 2286.5872407494708 22744.0505180796 10840.954485863216 1.674918177002793 1.7094394831404858 1.625168796836128 1.5060192103372483 2.288702136402433 3.0536622545059338 1.6660769965330917 0.21092121028007435 2.0979749105798957 1.0 13.404204163123122 1.98651579614216 24.834777554228673 0.9960921279741961 1.9759499354907235 0.293207950316809 0.5996217411257445 653.5066882639379 1203607.3158364235 0.24472958395959554 0.165681009999125 96.9428528676113 -1.98651579614216 0.9798578075165274 TEYLSNADER ddPTM_BT-474_Trastuzumab_2h_R1 1 TEYLSNADER 10 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8Y5T0;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 125.18 0.0072268 0.0 179850.0 209220.0 185770.0 190960.0 174660.0 193080.0 182610.0 171390.0 273270.0 215210.0 False True 178881.70758321328 216183.7612238393 211924.80125821373 215135.5164204303 196901.91570907287 179732.83406143123 173776.45666205656 184179.99210078552 205926.27013039563 201475.11354944928 0.8878600658503127 1.0730047866223438 1.0518658980986242 1.0678019365782776 0.9773014256708485 0.892084540343581 0.8625207034287415 0.9141575297118822 1.02209283569831 1.0 17.62024212075269 2.993562803762676 5.890177653225655 0.9256927775959435 1.026137385912942 0.24212332734881636 0.06618274776163445 0.18421842631011706 24.836708824436336 0.019767338168063045 0.02241717996948652 985.2871158649202 -2.993562803762676 0.10044460831699842 TEYNLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TEYNLR 6 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 148.28 0.025091 501400000.0 498890.0 694570.0 690260.0 606670.0 570710.0 555730.0 661720.0 560500.0 766160.0 572910.0 False True 496204.03167189006 717688.3425735692 787442.6081525247 683474.359796723 643386.5356368085 517313.69314770686 629710.0755841205 602327.3561613295 577350.1340180187 536346.3933070714 0.9251559027223684 1.3381060291062217 1.4681605357634886 1.274315196905626 1.1995727829355496 0.9645141639864299 1.174073478338086 1.1230193093075997 1.0764501098965564 1.0 19.032805524552412 2.9736282392156155 6.244020650605852 1.0868889336283607 1.2694368089696688 0.27617063588392066 0.13941156924943485 0.24465833868621886 33.352315490401715 0.042693429767339836 0.04701424457283431 941.0836738063704 -2.9736282392156155 0.18254787534130812 TEYPLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TEYPLHK 7 0 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 0 66.258 0.096804 0.0 83786.0 134950.0 119380.0 148220.0 108270.0 94292.0 107990.0 107270.0 105640.0 122950.0 False True 83334.90548549974 139441.72917100234 136187.66633043843 166984.63680266103 122057.54273343248 87773.81597949297 102766.11113813866 115275.03210602305 79606.4375034765 115103.22573720916 0.7240014773848362 1.2114493601539904 1.1831785378575481 1.4507381155755072 1.060418089516454 0.7625660828992608 0.8928169517400214 1.0014926286184729 0.6916090925655293 1.0 16.81256873961733 2.990796030711859 24.99334952803335 0.8855697513111206 1.1633679030466375 0.31766705881326773 0.18912015746957792 524.866848268903 1425279.5246887994 0.05582403284596819 0.06345003425713058 979.0300694407315 -2.990796030711859 0.2777981517355169 TFAPLPEFEQEEDDGEVTEDS(ph)DEDFIQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFAPLPEFEQEEDDGEVTEDSDEDFIQPR 29 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 TFAPLPEFEQEEDDGEVT(0.145)EDS(0.855)DEDFIQPR 89.039 0.0011040999999999998 27614000.0 25240.0 28708.0 27313.0 28634.0 25482.0 28997.0 29940.0 23406.0 29561.0 31136.0 True False 25104.110644427623 29663.52842564755 31158.43299114817 32259.061464089824 28726.981656352913 26992.505641595853 28491.68781809308 25152.674573259763 22276.08764710591 29148.87382312929 0.8612377547330081 1.017656071573849 1.0689412284060291 1.106700096196946 0.9855262961671745 0.9260222472189515 0.9774541545232962 0.8629038200886311 0.7642177801541717 1.0 14.831152525027635 2.1826196871293915 1.3853630566324744 0.8672060584296606 1.0143853458166643 0.27869378265659994 0.0840119212303548 0.49629322477306026 1.8350994759501262 0.052804639084809285 0.02923728788805018 152.27187208083507 -2.1826196871293915 0.1471792873870037 TFCPAHK ddPTM_BT-474_Trastuzumab_2h_R1 6 TFCPAHK 7 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;; 101.69 0.0088735 10520940000.0 10761890.0 10244100.0 9988510.0 9320480.0 9446110.0 12109470.0 12090110.0 10576980.0 13959500.0 11592050.0 False True 10703949.17999837 10585068.675810777 11394805.386314683 10500451.81234965 10649016.117019538 11272370.841526207 11505265.19059469 11366287.95641618 10519368.272716578 10852235.44454669 0.9863358784182262 0.9753814068906728 1.0499961454522844 0.9675842240988409 0.981273966219626 1.0387141800531647 1.0601746754744572 1.0473683523082615 0.969327317534621 1.0 23.371488917256816 2.7348935181749114 24.55564655609606 1.0308575827006319 0.993037590697145 0.16902957970828814 0.03212347354243346 370.35504483206876 2479975.390118186 0.010305214901091377 0.010089538269458511 543.1171518222084 -2.7348935181749114 -0.037819992003486846 TFCQLILDPIFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TFCQLILDPIFK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 122.51 0.00083105 128060000.0 258460.0 261570.0 237050.0 245630.0 228080.0 287150.0 276550.0 265520.0 377800.0 321310.0 False True 257068.48007760572 270276.1993275961 270424.5795244632 276726.73281498865 257124.63606392647 267299.9963783927 263172.2199764073 285334.45068324055 284696.25226063473 300803.720712669 0.8546053867570352 0.8985134847642622 0.8990067638916465 0.9199578122217479 0.8547920732321483 0.8886193154296803 0.8748968242576769 0.9485735416012194 0.946451897556745 1.0 18.19846288660036 1.354177951744376 1.3329205926295693 0.9928674344368166 0.8852864163244512 0.7470630075953986 0.021952803399870185 0.19374118177552307 0.6570371572528866 0.01986332740558786 0.006391253758750476 22.603617615439916 -1.354177951744376 -0.10758101811236542 TFDHMAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFDHMAR 7 0 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 0 102.77 0.008525299999999998 152730000.0 97328.0 169020.0 160230.0 183230.0 167170.0 125780.0 128040.0 114820.0 120530.0 128820.0 False True 96803.99686215747 174645.7285252525 182788.99125587323 206426.8992130048 188458.10860578113 117085.1246542719 121846.21603970056 123388.45144414624 90826.99651925421 120598.5973116494 0.8026958772331139 1.4481572125912474 1.515680906167691 1.71168573942497 1.5626890594653438 0.9708663887002099 1.0103452175718686 1.023133387905726 0.7531347672688118 1.0 16.879853601713815 2.7276906035252737 23.94241444966831 0.9636549758265072 1.4332361175221342 0.48465322518182286 0.23458526095896756 359.8215448620825 792544.9615459803 0.0778458685957555 0.07411880922531779 534.1836651089411 -2.7276906035252737 0.46958114169562704 TFDHYCEYR ddPTM_BT-474_Trastuzumab_2h_R1 4 TFDHYCEYR 9 0 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 202.36 1.9974e-05 2614880000.0 1858880.0 2041930.0 2130000.0 1875530.0 1305900.0 1875360.0 2099330.0 1495700.0 3038940.0 1960020.0 False True 1848871.9966209831 2109894.4056772506 2429885.4857081063 2112971.9056975776 1472198.624324277 1745720.7773225924 1997777.387680605 1607316.7290107058 2290033.956709719 1834929.8455424516 1.0075981929839992 1.1498501759087756 1.3242389029809316 1.1515273517571074 0.8023187523493891 0.9513828452697675 1.0887486475484363 0.8759554120912685 1.2480226218309327 1.0 20.80729347521404 3.441046284592565 24.94794974611569 0.9844800933576526 1.1725566087501096 0.2636703455019509 0.13317568511222772 197.7726277973903 136770.76340758544 0.036228966288830426 0.049054389238272995 2760.87207831042 -3.441046284592565 0.18807651539245696 TFDQLTPDESKER ddPTM_BT-474_Trastuzumab_2h_R1 4 TFDQLTPDESKER 13 1 Q15293 Q15293 RCN1 Reticulocalbin-1 0 ;;; 173.44 1.9766e-05 1896150000.0 1498890.0 1842650.0 1646320.0 1655510.0 1614290.0 1831320.0 1994850.0 1765010.0 2751090.0 2038380.0 False True 1490820.142782335 1903981.4913445532 1878107.5459300333 1865097.396256734 1819860.262853543 1704725.1588635815 1898351.4844329662 1896724.0087391795 2073120.7322173342 1908288.8432550817 0.7812340087045494 0.9977428197383468 0.9841841042923217 0.9773663996669008 0.953660798932985 0.8933265867423563 0.9947925289941093 0.9939396834201601 1.0863768027281913 1.0 20.86384812703698 1.7467255899744025 2.0426180280159296 1.0388815548863053 0.9408090600424968 0.31046624556499225 0.06340068221501859 0.3844849020371669 3.2485092169370793 0.04214729599827987 0.017722304426849595 55.8117435442443 -1.7467255899744025 -0.09807249484380853 TFDQLTPEESKER ddPTM_BT-474_Trastuzumab_2h_R1 6 TFDQLTPEESKER 13 1 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-9;O43852-13;O43852-14;O43852-11;O43852-12;O43852-2;O43852-4;O43852-8;O43852-7 O43852;O43852-2 CALU Calumenin 0 ;;;;; 182.02 1.0543e-05 4143510000.0 3644620.0 4194420.0 3738760.0 4172330.0 4003410.0 4576200.0 5150160.0 4424080.0 6352250.0 4720940.0 False True 3624997.770875351 4334028.734119572 4265144.910115516 4700546.550201365 4513220.533429865 4259858.0652160905 4901027.085278233 4754227.314623041 4786823.103289079 4419645.567399918 0.8202010128626538 0.9806281223291137 0.9650422969606373 1.0635573551131388 1.0211725045827593 0.9638460822826047 1.1089185796773091 1.0757032984027173 1.083078502628701 1.0 22.075499246936978 5.899949038334357 0.6435597910833515 1.0563094956683547 3.8272455508561384e-11 0.6960682423300941 0.043945691618083205 7.02033250585822 0.703107256850096 0.0180133845103655 7.654130559618063 794235.0308807209 -5.899949038334357 -1.0563094956300823 TFEDFVR ddPTM_BT-474_Trastuzumab_2h_R1 5 TFEDFVR 7 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;;; 121.52 0.010306999999999998 946400000.0 2224214.0 2632172.0 2626362.0 2513056.0 2287970.0 2539795.0 2684832.0 2327665.0 3166558.0 2708089.0 False True 2212239.0789574063 2719782.2538384283 2996130.9408522635 2831208.631930561 2579329.417639344 2364224.949684346 2554956.419105757 2501367.181943373 2386202.210603307 2535256.4415083644 0.8725898661522472 1.0727838846236317 1.1817861466785977 1.1167346172863357 1.0173840308259934 0.9325387802891205 1.007770408261214 0.986632808022833 0.941207434299476 1.0 21.273700252718733 3.0133974495943394 8.521243311250768 0.9765935582706794 1.070171273104095 0.22099211364878857 0.07647621749085759 0.2470177730619834 117.47707032037002 0.023099064156586448 0.027140972722007314 1031.3295217771124 -3.0133974495943394 0.0935777148334157 TFEEYLDEYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TFEEYLDEYYR 11 0 A0A494C108;Q8N9T8;H0YH26 A0A494C108 KRI1 Protein KRI1 homolog 0 ; 137.98 0.00015624 88058000.0 128517.0 124756.0 120639.0 113262.0 112183.0 129735.0 121004.0 116572.0 121781.0 118390.0 False True 127825.07875158094 128908.42804340558 137623.92258701447 127600.95758698549 126468.84008926446 120766.7248133406 115150.5742398307 125271.19458062193 91769.70433179534 110834.24884122158 1.1532994547082644 1.1630739540453479 1.2417093454945602 1.1512773255655253 1.1410628159752372 1.0896155843158917 1.0389439676249586 1.130257081094873 0.8279904929320391 1.0 16.75804423126093 1.9622992900238323 0.739058164655304 0.952791716440112 1.1813476283579758 0.6034803432371437 0.0688541203696476 0.46962974657490675 0.4876215685284238 0.05974118552312314 0.03157724758579476 91.68521126087062 -1.9622992900238323 0.22855591191786384 TFEHVTSEIGAEEAEEVGVEHLLR ddPTM_BT-474_Trastuzumab_2h_R1 5 TFEHVTSEIGAEEAEEVGVEHLLR 24 0 P51665;H3BNT7;H3BTM8 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 ;;;; 399.9 1.762899999999999e-138 1149451000.0 161803.2 217241.6 192792.8 208045.8 217312.9 208990.3 195879.3 163856.5 219436.8 203179.7 False True 160932.06954922553 224472.35533067962 219936.3504549418 234384.37694858335 244986.40970052773 194543.29247124883 186403.8699274079 176084.30407644753 165359.54094247337 190212.5975951073 0.8460642017611828 1.180112979732808 1.15626595312633 1.2322232066222107 1.2879610120356684 1.0227676554071354 0.9799764699296796 0.9257236707910708 0.8693406379658567 1.0 17.537253272087106 2.4522688739662235 3.6370525164528957 0.9392494025928317 1.1497485584904605 0.39398664544438566 0.11437653062097546 0.22654603576282384 6.457818531347114 0.04153371109625171 0.03540065595703351 283.3145468004912 -2.4522688739662235 0.2104991558976288 TFEINPR ddPTM_BT-474_Trastuzumab_2h_R1 5 TFEINPR 7 0 P14625;H0YIV0;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 ;;;; 199.65 0.00086569 2299510000.0 2014160.0 2529420.0 2356150.0 2297230.0 2432720.0 2458770.0 2570020.0 2314690.0 2941630.0 2297610.0 False True 2003315.9863542113 2613610.215633324 2687875.4399770717 2588059.082459703 2742512.4721388766 2288801.017222011 2445698.314170191 2487423.9215576625 2216704.7023225245 2150974.5627171155 0.9313527091755183 1.2150818800626848 1.249608194613767 1.2032030165854037 1.2750092537935591 1.0640762828597996 1.1370187061072354 1.15641717232376 1.0305583063345847 1.0 21.036559032969915 1.1906596738103683 3.3325631092797146 0.9998450461171902 1.1621652446870867 0.2572575171719088 0.09406612091390303 0.30224210577266825 6.002146133124727 0.0855807472757431 0.02345437122832155 15.511709894257093 -1.1906596738103683 0.16232019856989655 TFFPEYTHQLFGDDETAFGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFFPEYTHQLFGDDETAFGYK 21 0 O14929 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 ; 219.34 5.094100000000001e-25 435440000.0 332970.0 318080.0 315290.0 273430.0 281960.0 376140.0 391000.0 349240.0 449260.0 371670.0 False True 331177.32651644456 328667.10051657964 359680.0914501922 308046.2099645906 317865.93469214573 350138.3271383196 372085.8362349497 375302.0622047868 338545.8927755764 347949.7023973038 0.9517965505781413 0.9445822147630222 1.0337128871560126 0.8853182165186919 0.9135398952840399 1.0062900606781287 1.0693667322355869 1.078610096858916 0.9729736523499316 1.0 18.408519247906074 2.522562002909892 5.123051454344572 1.0422292906750181 0.9477308147376663 0.425842908305623 0.04599853611783065 0.1789470406094957 11.03114615370598 0.015773093232531493 0.014433882105541647 333.0903132110816 -2.522562002909892 -0.09449847593735183 TFGETHPFTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFGETHPFTK 10 0 P09960-4;P09960;P09960-3;P09960-2 P09960-4 LTA4H Leukotriene A-4 hydrolase 0 ; 117.52 0.00094675 485610000.0 3182200.0 3275000.0 2720300.0 2811000.0 2887100.0 3320800.0 3461100.0 2972200.0 4338700.0 3509900.0 False True 3165067.388775655 3384006.395220694 3103294.5947285276 3166872.3117816793 3254755.0718176127 3091240.9123223606 3293673.370314026 3194000.656525786 3269485.520601413 3285895.1770234248 0.9632283497377956 1.0298582921583472 0.9444289691370166 0.9637776438901609 0.9905230984166632 0.9407606590550479 1.00236714589832 0.9720336421136591 0.9950060316784431 1.0 21.6478550270922 1.1472329984389162 1.3200449462562744 1.0005549445309694 0.9755100913830176 0.09986338782365067 0.025341894377609513 1.011637254349799 3.5305672673088164 0.0225326320212098 0.00697544813880021 14.035665142585506 -1.1472329984389162 -0.025044853147951796 TFHHVYSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFHHVYSGK 9 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 153.24 4.5422e-05 1268210000.0 1458410.0 1932590.0 2085670.0 1787290.0 1649920.0 2084510.0 2030490.0 836640.0 2701100.0 1701180.0 False True 1450558.0826045852 1996915.089874676 2379314.2070313785 2013560.7307450268 1860027.5321579836 1940412.7301087321 1932267.4414749432 899074.3251718375 2035450.0978856543 1592609.2359465263 0.9108060218817476 1.2538638134217908 1.4939723777360203 1.2643156182303055 1.1679120591389287 1.2183859582827912 1.2132715281702795 0.5645291417875621 1.2780599609394685 1.0 20.602960898636884 1.948410125432044 24.355557320627458 0.8965827142572638 1.2308121420484375 0.24537781405526726 0.21068970531618383 282.56281990862334 133396.98941849518 0.08485275622876305 0.054763037209335494 88.79941923749901 -1.948410125432044 0.3342294277911737 TFHIEEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFHIEEPR 8 0 Q969N2;Q969N2-5;Q969N2-6;Q969N2-4;A0A1W2PP53;Q969N2-2;A0A1W2PNP0;A0A1W2PPR6;Q969N2-3;A0A1W2PR73 Q969N2 PIGT GPI transamidase component PIG-T 0 117.04 0.0046636 0.0 95760.0 143560.0 149620.0 137900.0 152500.0 171760.0 148530.0 64736.0 178900.0 120180.0 False True 95244.43879993621 148338.30781614757 170685.19547964656 155358.1258607946 171919.97106168346 159886.6354795496 141345.03646029948 69566.92904274733 134812.4921371824 112510.00950872553 0.8465419140556528 1.3184454295565893 1.5170667589927573 1.3808382608726564 1.5280415654782296 1.4210880985406888 1.2562885478143853 0.6183176887684129 1.1982266531292687 1.0 16.77969383166775 1.9300806411066382 8.128202946265878 0.9043736624660097 1.3524887489497754 0.38488181550433065 0.22314428740999476 0.2998136057258626 32.065258706279224 0.09413976747919142 0.059175865257113096 85.12960947490126 -1.9300806411066382 0.44811508648376575 TFHIFYYLLSGAGEHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TFHIFYYLLSGAGEHLK 17 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 211.17 1.5706e-12 159880000.0 314510.0 240120.0 229290.0 259390.0 199240.0 287260.0 377910.0 226910.0 419450.0 306700.0 False True 312816.71310534613 248112.24904439464 261572.03897559256 292228.747404144 224612.03301199878 267402.39233730495 359629.04954360577 243843.17642563343 316082.1678420407 287126.14342091954 1.0894748537292367 0.8641228070989986 0.9110004260118336 1.0177712970418864 0.7822764946998341 0.9313063211568997 1.2525123810004262 0.8492545245807366 1.1008477461373916 1.0 18.131325171288267 2.428684017308501 24.999990686711786 1.0338159231588888 0.9250190834306079 0.178178733850489 0.12143180481260402 210.48854235213656 108638.60130433287 0.04053261380864816 0.03391202599333407 268.33913613043603 -2.428684017308501 -0.10879683972828091 TFHVDSPDEREEWMR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFHVDSPDEREEWMR 15 1 P31751;P31751-2;M0R0P9;J3QKW1;A8MX96;C9JHS6;J3QLS6;M0QZK3;E7EVP8;A0A1B0GXA2;J3KRI8;A0A5F9ZHJ8;A0A0A0MRF1;C9JIJ1;C9JC83 P31751 AKT2 RAC-beta serine/threonine-protein kinase 0 160.78 1.0151e-06 88517000.0 70520.0 71648.0 79277.0 86568.0 69058.0 85078.0 71363.0 45704.0 95875.0 72223.0 False True 70140.32815550854 74032.76036786933 90438.51251196323 97527.49992398299 77852.12696116549 79196.75811206996 67910.8990568663 49114.664560209494 72247.8909091804 67613.66630677877 1.0373690998690372 1.0949378197000241 1.3375774078220055 1.4424228895010407 1.151425905643579 1.1713128785641653 1.004396045449435 0.7264014398711194 1.0685397620855979 1.0 16.04502725801428 2.181706255338929 3.1571698494728055 0.8945815162116066 1.2192781848052021 0.45199147792555205 0.13749266541503066 0.20355534611587991 4.1309696806724485 0.060103045960346914 0.04252643165501766 151.9519421571546 -2.181706255338929 0.32469666859359547 TFIAIKPDGVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TFIAIKPDGVQR 12 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 ; 151.99 6.332e-05 19931700000.0 7842400.0 7575000.0 7461600.0 7036800.0 6674800.0 8805700.0 8154900.0 7700600.0 10881100.0 8164600.0 False True 7800177.389772546 7827129.295815799 8512128.42261015 7927658.158500639 7524796.215360817 8196982.68538816 7760416.332256746 8275257.874854485 8199598.704269961 7643528.23793427 1.0204943511637514 1.024020459160513 1.1136386440446548 1.0371726134478385 0.9844663329711801 1.0724082426630068 1.0152924265710654 1.0826489570333484 1.0727504954552212 1.0 22.86580730658826 1.7358004130528317 24.99999999810402 1.0597821498860776 1.0397760220171597 0.011763567257876417 0.03882129581783939 1.1694185716414132 10415.434441423402 0.017721461385415235 0.009827378646324032 54.42524754656606 -1.7358004130528317 -0.020006127868917867 TFIGPGGNMPGYLRPETAQGIFLNFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFIGPGGNMPGYLRPETAQGIFLNFK 26 1 P41250 P41250 GARS Glycine--tRNA ligase 0 ; 305.56 3.6462999999999995e-71 1717590000.0 625120.0 644950.0 560090.0 599820.0 603860.0 726380.0 657280.0 682960.0 908870.0 697810.0 False True 621754.4233773609 666416.7708694922 638945.8036104474 675757.150499069 680757.9916413646 676167.0603145981 625484.8553465664 733925.9432006102 684891.1667340474 653275.1683748018 0.9517496661079937 1.020116488626659 0.9780653460317458 1.034414260961728 1.0420692911609266 1.0350417298069758 0.9574600193401331 1.1234560545542378 1.0483961428350306 1.0 19.317331276974915 6.503226238532872 0.4008723732801373 1.0478176151886898 0.6228670770420183 0.22896613996538984 0.042248534847160756 29.828709738647387 1.2216507963610406 0.030671414251534794 8.162035820428002 3185856.708926194 -6.503226238532872 -0.4249505381466715 TFIIGELHPDDRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TFIIGELHPDDRPK 14 1 P00167-2;P00167;J3KNC7 P00167-2 CYB5A Cytochrome b5 0 128.22 4.5057e-05 359950000.0 996540.0 689040.0 501000.0 372030.0 442270.0 752630.0 630540.0 451590.0 1185700.0 659970.0 False True 991174.7393660026 711974.2798665245 571536.4452299359 419128.9598549052 498590.4629603332 700602.4596004514 600038.371303287 485289.93892755517 893500.1225659981 617850.1495712564 1.604231608673732 1.1523413571406975 0.9250405549412607 0.6783666883398031 0.8069763571414835 1.1339358905822379 0.9711713620522234 0.7854492537783013 1.4461437343440364 1.0 19.23689745061668 4.664151966603927 2.466637204470277 0.9437728762370023 1.6938737496652114 0.47131693984340506 0.20217048611078134 0.35963663708003263 3.054135050629591 0.04997906332445099 0.5286485124063995 46147.902522323275 -4.664151966603927 0.7501008734282091 TFLDKDAQRLS(ph)PIPEEVPK ddPTM_BT-474_Trastuzumab_2h_R1 3 TFLDKDAQRLSPIPEEVPK 19 2 Q96T23-2;Q96T23;Q96T23-3;H0YCN2;H0YER1 Q96T23-2 RSF1 Remodeling and spacing factor 1 1 T(0.001)FLDKDAQRLS(0.999)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK 163.74 1.3095999999999993e-11 1366760000.0 1566500.0 1560690.0 1385670.0 1545640.0 1434730.0 1872590.0 2006600.0 1711010.0 3336530.0 1955530.0 True False 1558066.1380545134 1612636.6231929741 1580760.2915404465 1741317.8655219623 1617434.361189044 1743142.2609027124 1909533.092043607 1838694.2545327314 2514286.8887114213 1830726.401186538 0.8510644392546549 0.8808725444434435 0.863460695446309 0.9511622623639295 0.8834932189434456 0.9521588041626208 1.0430466785238868 1.004352290621378 1.3733821105555977 1.0 20.803984768354027 1.9519064120413625 1.2173987550021426 1.1556566003774906 0.887387080166805 0.5460713264031658 0.0977898937821483 0.34147622009541795 0.934883798799231 0.07038677074148936 0.031600721297132754 89.51718403891904 -1.9519064120413625 -0.2682695202106856 TFLEFYEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFLEFYEEK 9 0 O43148;O43148-2;K7EP06 O43148 RNMT mRNA cap guanine-N7 methyltransferase 0 ; 129.38 0.00090924 85501000.0 139074.0 142450.0 137061.0 124200.0 106162.0 146693.0 153655.0 122493.0 196740.0 152262.0 False True 138325.24103657395 147191.36213715645 156357.9974444315 139923.70726548706 119681.10142852746 136552.45818817875 146222.12063089825 131634.0496668505 148256.0631809349 142544.5088019435 0.9704003486291292 1.0325993149386725 1.0969064943896292 0.9816141529513572 0.8396051341045814 0.9579636517455027 1.0257997439527085 0.9234592814076592 1.0400685682457766 1.0 17.12105293828796 3.490967914199975 24.86831932277008 0.9578008343981795 1.0342365456740195 0.20263727525384667 0.060272262857340254 852.0963776333896 1530345.7876048354 0.016259813602526853 0.02409542362653448 3097.1904694496125 -3.490967914199975 0.07643571127583992 TFLEGDWT(ph)SPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TFLEGDWT(0.717)S(0.282)PSK 149.57 0.00075324 27954000.0 123120.0 109100.0 94209.0 98838.0 98296.0 124370.0 115180.0 113460.0 162350.0 136170.0 True False 122457.13559991785 112731.32754765743 107472.8083206925 111350.88066591146 110813.4129539623 115772.59463548895 109608.30336967141 121926.96133820615 122341.01787854412 127479.51401899786 0.9606024665395921 0.8843093607248727 0.843059444866382 0.873480586451853 0.869264475996105 0.9081662691170578 0.8598111172069329 0.9564435688077362 0.9596915929591012 1.0 16.959905898792936 1.6204283687472905 4.4106112112447455 0.9735555015341162 0.8837284985187633 0.6132041598509369 0.031664233447519355 0.10972168321049848 4.817552325070842 0.01814131480425198 0.008277173906024525 41.72807677282993 -1.6204283687472905 -0.08982700301535285 TFLEGDWTS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 7 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TFLEGDWT(0.031)S(0.969)PS(0.001)K;TFLEGDWT(0.003)S(0.997)PSK;TFLEGDWT(0.001)S(0.892)PS(0.107)K;TFLEGDWT(0.001)S(0.997)PS(0.002)K;TFLEGDWTS(1)PSK;TFLEGDWTS(0.992)PS(0.008)K;TFLEGDWTS(0.981)PS(0.019)K 377.15 7.466999999999996e-87 2545920000.0 8612046.0 6839101.0 6010428.0 5673213.0 5809908.0 8656480.0 8809565.0 7692510.0 11681250.0 8590940.0 True False 8565679.70122426 7066736.34246115 6856644.018823286 6391441.18411236 6549765.345777338 8058077.912762055 8383412.685143591 8266564.157974302 8802562.458230633 8042658.854126235 1.0650308382568898 0.8786567316398862 0.8525344843273476 0.7946925637450446 0.8143781135783253 1.0019171593518368 1.0423683059542597 1.027839711705936 1.094484127436853 1.0 22.93924109579396 2.586573013569736 4.914506559400307 1.0397688385654555 0.8751334884555748 0.532404792598846 0.07187488895875757 0.18129597935123198 6.705104825238939 0.024665922297877146 0.023033917435959485 385.9872983082952 -2.586573013569736 -0.16463535010988073 TFLVGER ddPTM_BT-474_Trastuzumab_2h_R1 7 TFLVGER 7 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ;;;;;; 138.9 0.006377300000000001 1884108000.0 2235080.0 2432670.0 2280560.0 2464300.0 2305620.0 2312670.0 2323820.0 2154710.0 2659930.0 2423920.0 False True 2223046.5776207317 2513639.9503699313 2601643.0250171255 2776280.1273296257 2599227.0405195993 2152800.5663396027 2211407.948745527 2315505.4015956786 2004425.8927359164 2269223.350377681 0.9796508471723314 1.1077093623029968 1.146490505037381 1.2234494796942539 1.1454258304221105 0.9486948765890755 0.974521943103339 1.0203955468774346 0.8833092134374112 1.0 21.11376718389812 2.739621015403376 24.998732802124195 0.971863136912278 1.1269904163664526 0.5780009546260487 0.06605898354177503 73.90011697166904 1742201.7148138145 0.021614706320442316 0.02176474536142897 549.0615293350115 -2.739621015403376 0.1551272794541746 TFNQVEIKPEMIGHYLGEFSITYKPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFNQVEIKPEMIGHYLGEFSITYKPVK 27 2 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841 K7EM56 RPS15 40S ribosomal protein S15 0 ; 277.01 3.7856999999999986e-61 1625248000.0 1469700.0 1173890.0 1122520.0 1109740.0 1265300.0 1701290.0 1563040.0 1565060.0 2303410.0 1570480.0 False True 1461787.2984990212 1212962.21901851 1280561.0588812525 1250232.9702157958 1426428.4549793308 1583683.8267058881 1487429.7838073538 1681852.724413651 1735765.469612674 1470250.621844428 0.9942436185915097 0.8250037109298075 0.870981477480887 0.85035364150867 0.9701940837745593 1.0771522917087146 1.0116845126318497 1.143922471057192 1.180591556176428 1.0 20.487630670013907 2.8567527626938443 1.902798908074583 1.0971145393393735 0.8786741727977367 0.6626195701804227 0.06607994104872252 0.19005489210377532 1.365906078946406 0.023362129285554718 0.024953585502063027 719.0395230979121 -2.8567527626938443 -0.2184403665416368 TFNTSTGGLLLPSDTKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TFNTSTGGLLLPSDTKR 17 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ; 196.01 2.6272e-11 2588200000.0 1592030.0 1647760.0 1616910.0 1567900.0 1593230.0 1915940.0 1804990.0 1725810.0 2311700.0 1865580.0 False True 1583458.6873711622 1702604.6955080468 1844556.8735663367 1766395.9792395919 1796118.3966859404 1783495.5774376355 1717675.737968597 1854598.7056856127 1742012.510192984 1746517.0871966055 0.9066379590438626 0.9748571645760168 1.0561344558770382 1.0113820197859584 1.0284001283771873 1.0211727045284082 0.9834863629795328 1.0618840887852363 0.9974208228269602 1.0 20.736049326854097 4.5706891988218015 3.2226526459335987 1.0223034922315777 0.9064797981917843 0.6799168326489244 0.0238840804863798 0.14048599505776505 2.480074651684991 0.0055450997013757304 0.03182099307995578 37212.53008973996 -4.5706891988218015 -0.11582369403979342 TFNVDMYEEIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFNVDMYEEIHR 12 0 Q13098-7;Q13098;Q13098-5;A8K070;A0A096LPJ3;A0A096LP07;C9JFE4;J3KSA5;J3KRJ4;J3QLT0;J3QS84;J3KRE8;J3QLE8;J3KTB0;J3QS88;J3QL53 Q13098-7 GPS1 COP9 signalosome complex subunit 1 0 128.9 0.00024376 490180000.0 114230.0 129250.0 121910.0 129150.0 121890.0 139860.0 137450.0 117060.0 145720.0 138860.0 False True 113614.99837214606 133552.00811672502 139073.86833928424 145500.376757952 137411.9690013679 130191.80739502703 130801.01839000988 125795.61161863578 109809.25854796091 129997.83591597292 0.8739760748446899 1.027340241287166 1.06981679625173 1.1192522993382714 1.0570327423772445 1.0014921131393255 1.006178429574444 0.967674659599308 0.844700665778303 1.0 16.988128081234535 1.6470079261040653 2.582674098036404 0.9195063001613569 1.0301806858062794 0.24573318986386683 0.06951958055472172 0.31100279863577335 4.726994809598548 0.04758453624432997 0.01934179038045325 44.36167400977621 -1.6470079261040653 0.11067438564492249 TFPLCFDDHDPAVIHENASQPEVLVPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TFPLCFDDHDPAVIHENASQPEVLVPIR 28 0 Q12824-2;Q12824 Q12824-2 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 0 ; 199.83 2.6849e-25 346530000.0 167357.0 186530.0 177472.0 179912.0 173736.0 213166.0 169301.0 89975.0 181816.0 155566.0 False True 166455.9685071106 192738.53829023373 202458.5149857227 202688.84075320713 195860.24978605026 198430.3361587897 161111.26383737387 96689.39138379235 137009.8830095804 145637.64469324675 1.142946034713161 1.323411530694516 1.3901523566393597 1.3917338554885723 1.344846314966067 1.3624934444438386 1.1062473866335785 0.6639038387873342 0.9407587117888455 1.0 17.15202378871385 1.9988759877419586 4.350415347000586 0.8380339663240226 1.3292810884997712 0.7882261764740562 0.106049526697114 0.0789481924815072 3.6386167455919627 0.045247675981600004 0.029079404880526717 99.74152124612151 -1.9988759877419586 0.4912471221757486 TFS(ph)ATVR ddPTM_BT-474_Trastuzumab_2h_R1 13 TFSATVR 7 0 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 T(0.006)FS(0.98)AT(0.014)VR;TFS(0.739)AT(0.26)VR;TFS(0.997)AT(0.003)VR;TFS(0.997)AT(0.002)VR;T(0.236)FS(0.738)AT(0.026)VR;TFS(0.987)AT(0.013)VR;TFS(0.999)AT(0.001)VR;T(0.001)FS(0.998)AT(0.001)VR;TFS(0.786)AT(0.214)VR;T(0.003)FS(0.939)AT(0.057)VR;T(0.003)FS(0.942)AT(0.056)VR;T(0.003)FS(0.91)AT(0.087)VR;T(0.005)FS(0.873)AT(0.122)VR 189.73 0.00057774 165934021000.0 37978770.0 37162982.0 36487946.0 34683464.0 35266473.0 41796071.0 42537824.0 34730287.0 45263978.0 37328780.0 True False 37774296.52215803 38399929.390373014 41625131.637887955 39074386.986224286 39757449.29578778 38906806.989138186 40480106.94285191 37322037.37276396 34109277.128130734 34946425.301623546 1.080920185573404 1.098822814034402 1.1911127183573231 1.1181225733096358 1.1376685584473993 1.1133272331385107 1.1583475732772954 1.067978685963913 0.9760448124159378 1.0 25.058641552905854 1.4461414822099679 3.318695986468646 0.9893428226007801 1.128707716427446 0.7770853814908618 0.02988087450717283 0.10279071673200126 2.0922361016556312 0.022348219962991193 0.0077728889537386665 27.934537299271394 -1.4461414822099679 0.13936489382666584 TFS(ph)EPGDHPGMLTSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TFSEPGDHPGMLTSGK 16 0 Q9HA47-3;Q9HA47;Q9HA47-4 Q9HA47-3 UCK1 Uridine-cytidine kinase 1 1 T(0.086)FS(0.914)EPGDHPGMLTSGK 130.36 3.2456e-05 231050000.0 314410.0 251690.0 248750.0 262300.0 234650.0 312080.0 274690.0 262810.0 401260.0 288410.0 True False 312717.25149423484 260067.34950018188 283771.83782624005 295507.1531057749 264531.28662048554 290506.6441573001 261402.1952822974 282422.21672213974 302374.84960852884 270003.4268797766 1.158197342559942 0.9632001804776392 1.0509934673999308 1.0944570464187267 0.9797330710853251 1.0759368779665635 0.9681439909971624 1.045994934160198 1.119892636559632 1.0 18.042618192494714 3.2645716391508706 24.996734104686205 1.032374694873841 1.058195515650608 0.06534973536960631 0.061707914035993024 884.4458599037246 849952.1188076752 0.016381890442632076 0.022172556998879947 1838.9572744863365 -3.2645716391508706 0.02582082077676695 TFS(ph)LTEVR ddPTM_BT-474_Trastuzumab_2h_R1 6 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 TFS(1)LTEVR;T(0.004)FS(0.996)LTEVR;T(0.005)FS(0.918)LT(0.076)EVR;T(0.003)FS(0.997)LTEVR;T(0.015)FS(0.961)LT(0.024)EVR;T(0.055)FS(0.943)LT(0.002)EVR 262.48 2.8001e-13 4302340000.0 2719300.0 2336540.0 2203265.0 2343690.0 2130410.0 2595600.0 2653710.0 2326926.0 3177610.0 2804640.0 True False 2704659.590942635 2414310.321431743 2513465.560877314 2640400.9136960516 2401705.085570631 2416172.281385181 2525339.909143346 2500573.0340108117 2394530.593292522 2625645.4740268895 1.0300932162004963 0.9195111622320332 0.9572753007748879 1.005619738009234 0.9147103481138272 0.9202203059347367 0.961797749972045 0.9523650693693017 0.9119778800982173 1.0 21.32424069980008 4.751841719946549 24.399686777141874 0.9485843433124624 1.0300932907927605 0.3632175800240125 0.03209092840775366 1724.984194326988 3169016.162164047 0.007365823069369522 0.13977129595090268 56473.111918694776 -4.751841719946549 0.08150894748029802 TFSATVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TFSATVR 7 0 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9;H3BTK3;I3L3X8 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 0 ; 102.71 0.019865 189160000.0 227791.0 297621.0 277678.0 289630.0 283933.0 274705.0 279980.0 228604.0 247568.0 246704.0 False True 226564.59856595958 307527.1350693066 316772.6487795566 326297.1283035674 320090.1845472591 255715.28993601367 266436.2977725351 245663.59130759057 186558.18364124082 230959.13950607926 0.9809726475881505 1.3315218255790735 1.371552775339374 1.4127915829673356 1.3859169428488185 1.107188442435649 1.1536079426963834 1.0636668972397356 0.8077540643778259 1.0 17.817278112025384 1.9117935012030425 1.2016193201677325 0.9212109614698835 1.2986010527123002 0.5344645049190941 0.13351719045718496 0.36014153995353393 0.9600615363176765 0.10558357913568817 0.04607273683973147 81.61941942066979 -1.9117935012030425 0.37739009124241674 TFSEILNR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFSEILNR 8 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 83.206 0.042633 135620000.0 160340.0 222530.0 201090.0 225310.0 210960.0 185470.0 211390.0 196520.0 187320.0 207750.0 False True 159476.74725544857 229936.77652777423 229401.7240943869 253834.22289844553 237824.50554211636 172648.89544941805 201164.25811178013 211185.32030833975 141157.49595940195 194491.2171362766 0.8199688891026169 1.1822476094982817 1.1794965730182516 1.305119206080079 1.2228033175167847 0.8876950743150833 1.0343102432786353 1.0858347406009903 0.7257782538349552 1.0 17.569345481678955 2.7414250878596795 24.988418684995988 0.9703837300939036 1.15532056676477 0.2885839640501081 0.15024172989144371 357.2501862632444 3116507.060646904 0.04751565481649153 0.048416000101779814 551.3470914494604 -2.7414250878596795 0.18493683667086636 TFSHELSDFGLESTAGEIPVVAIR ddPTM_BT-474_Trastuzumab_2h_R1 6 TFSHELSDFGLESTAGEIPVVAIR 24 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;;; 279.19 3.7081e-52 8422800000.0 3539060.0 4892050.0 4325340.0 4377580.0 4133460.0 4606080.0 4620950.0 4005000.0 4893370.0 4302660.0 False True 3520006.0941865286 5054878.926943329 4934310.27547076 4931781.179156606 4659831.630063118 4287672.531146046 4397416.994756756 4303873.436977924 3687464.5312986285 4028060.5551074403 0.8738711958347507 1.2549163196004884 1.2249841351600899 1.2243562656731364 1.1568424968573559 1.0644508622665632 1.0916958507937486 1.0684728737557736 0.9154441649649612 1.0 21.94165394132243 1.7717161524637566 1.059141410189536 0.9665696511308183 1.155127795807415 0.2755104079501677 0.10572188980997688 0.620754995116021 1.2935836853014908 0.08855040624245113 0.03603640303696901 59.117512580686245 -1.7717161524637566 0.18855814467659682 TFTAWCNSHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TFTAWCNSHLR 11 0 O43707;F5GXS2;O43707-3;K7EP19;P12814-3;P12814;P12814-2;P12814-4;P35609-2;P35609;G3V2N5;A0A494C1A0;Q08043;A0A494C166;A0A494C033;A0A494C0Q3 O43707;P12814-3 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 ; 140.63 3.850800000000001e-05 1068720000.0 1026410.0 1112220.0 1158760.0 924610.0 728230.0 926610.0 889160.0 774710.0 1438490.0 966570.0 False True 1020883.9226048713 1149239.5703488123 1321903.3358775263 1041665.531197602 820965.7739426206 862555.6317053194 846147.9338789445 832522.7940976704 1083993.4142784546 904882.6750777909 1.128194793338383 1.2700426276257466 1.4608560560228265 1.1511608740968018 0.9072621197792785 0.9532237222147802 0.9350913186686914 0.9200339635479264 1.1979380798568897 1.0 19.787371222371707 3.4429773542276085 5.1107372096803 0.9745054332040689 1.288913911346009 0.6119748485992771 0.10786158573219155 0.1140540496848121 7.483788044174814 0.03004808663980849 0.042048357919258546 2773.1754969234803 -3.4429773542276085 0.3144084781419402 TFTEMDSHEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TFTEMDSHEEK 11 0 B0YIW6;P48444;P48444-2;Q6P1Q5 B0YIW6 ARCN1 Coatomer subunit delta 0 ;;; 206.97 2.4573e-08 4256530000.0 6650040.0 6205470.0 5470070.0 5379280.0 5502510.0 6905460.0 6933270.0 5960450.0 9345400.0 6719240.0 False True 6614236.923528899 6412015.317664176 6240208.309299219 6060296.296449996 6203222.032568034 6428101.803904347 6597881.24243654 6405249.045551824 7042351.391944234 6290412.350569216 1.0514790692426357 1.0193314778615359 0.9920189586195485 0.9634179698730884 0.9861391728964649 1.021888780204158 1.0488789724316725 1.0182558294405322 1.1195373211593953 1.0 22.58472316140847 2.4475460830545988 3.814567147800701 1.0448246242817234 1.0007249070677 0.24898488107496408 0.03596885989632098 0.32818289635257153 10.414370368335105 0.012957124330942262 0.01101973607109867 280.2502979914453 -2.4475460830545988 -0.04409971721402339 TFVDFFSQCLHEEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 TFVDFFSQCLHEEYR 15 0 Q53GQ0;A0A1B0GV93 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase 0 190.82 2.0082e-07 198350000.0 166820.0 160260.0 197880.0 141060.0 154020.0 195990.0 201390.0 128180.0 263700.0 172590.0 False True 165921.85965544428 165594.15722078423 225739.78399620682 158918.18153679217 173633.5340519375 182441.67261083462 191647.9963154896 137745.44248485134 198714.6683989657 161575.1584382669 1.0269020390212902 1.0248738656447172 1.3971193726692543 0.9835557834065818 1.0746301333089996 1.1291443212821617 1.1861229050795743 0.8525162148454882 1.2298590347654754 1.0 17.30184588073928 TFVNITPAEVGVLVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TFVNITPAEVGVLVGK 16 0 P07737;I3L3D5 P07737 PFN1 Profilin-1 0 ; 210.14 2.4319000000000004e-11 229460000.0 431850.0 421940.0 388440.0 370790.0 344710.0 467490.0 486450.0 457460.0 592380.0 456200.0 False True 429524.9675830454 435984.01783188403 443128.97561899433 417731.9759820446 388606.7752437567 435173.5166530901 462918.55508054007 491597.98813481146 446395.8864853217 427084.92542753037 1.0057132481392839 1.0208368216121075 1.0375664165046405 0.9781004926921195 0.9099051549401904 1.0189390698289402 1.0839028200705954 1.1510544129898772 1.0452157402616358 1.0 18.704163451333386 2.304405996079642 4.219761824253157 1.0904887664288432 0.991797734274998 0.33854733422016237 0.04908378101920727 0.19592443693302442 6.8903562415673525 0.018501868819318215 0.014897463440244122 201.56076410869267 -2.304405996079642 -0.09869103215384523 TFVQEDIYDEFVER ddPTM_BT-474_Trastuzumab_2h_R1 5 TFVQEDIYDEFVER 14 0 P05091;P05091-2;S4R3S4 P05091 ALDH2 Aldehyde dehydrogenase, mitochondrial 0 ;;;; 315.59 1.6487e-55 811864000.0 388816.0 484854.0 492891.0 427427.0 546700.0 785240.0 466895.0 404372.0 589504.0 540997.0 False True 386722.6578575182 500992.07228956814 562285.7685146263 481539.2143749221 616319.0044552281 730958.2070561347 444309.5051378945 434548.29199940973 444228.6381488963 506470.1082891653 0.7635646241075332 0.9891838907964347 1.1102052407673257 0.9507751918500014 1.2168911735721735 1.4432405685802085 0.8772669854865734 0.8579939563803589 0.8771073176450273 1.0 18.9501175985559 TFYEDEMASHLDSK ddPTM_BT-474_Trastuzumab_2h_R1 4 TFYEDEMASHLDSK 14 0 Q9ULX6;Q9ULX6-2 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 0 ;;; 244.44 1.366e-17 2841660000.0 1717220.0 1751420.0 1604190.0 1559740.0 1512700.0 1969280.0 1950520.0 1886700.0 2581310.0 1986140.0 False True 1707974.6783210773 1809714.955944253 1830046.0081305585 1757202.9240762566 1705333.378524646 1833148.3087864919 1856165.8958900115 2027495.1344684765 1945180.738281892 1859382.844779995 0.9185707414242426 0.9732879708043026 0.9842222720663492 0.945046324918724 0.9171502164345415 0.9858907292453765 0.9982698835266687 1.0904129508134581 1.0461432102284716 1.0 20.8263924194093 2.1277761053089113 2.45133595941379 1.0536399082082057 0.9522884063904203 0.6401112239963976 0.03058626550974946 0.16282489014538343 1.9402689751989775 0.01433320124235114 0.009004876276184149 134.20728950926127 -2.1277761053089113 -0.1013515018177854 TFYIDHNSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TFYIDHNSK 9 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;K7ERN1;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 0 79.48899999999998 0.023425 0.0 267730.0 363590.0 381660.0 356450.0 384420.0 452930.0 399160.0 431210.0 541170.0 442040.0 False True 266288.5714275994 375691.87335520406 435394.4105518107 401576.5334523581 433373.6083641466 421620.0151825359 379851.1058607226 463389.07984001236 407805.9048064783 413828.62875051546 0.6434754701036806 0.9078440863058247 1.0521128319865385 0.970393311513632 1.0472296459349462 1.0188275674777387 0.9178947019871917 1.1197608083305792 0.9854463332751489 1.0 18.65867392902986 4.691692369584725 2.4270718100182593 1.0183244962673004 0.578765908472052 0.8234130854669834 0.0517603689520114 0.17476294012564625 1.3671734838569831 0.012544922020695506 0.1533648835506392 49169.1125246025 -4.691692369584725 -0.43955858779524837 TGADTTAAGPLFQQRPYPS(ph)PGAVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGADTTAAGPLFQQRPYPSPGAVLR 25 1 O60828-2;O60828;O60828-5;O60828-4;H7C053 O60828-2 PQBP1 Polyglutamine-binding protein 1 1 TGADTTAAGPLFQQRPY(0.244)PS(0.756)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR 141.78 2.1943000000000005e-07 357700000.0 159518.0 152901.0 158390.0 172244.0 145313.0 167960.0 173125.0 171856.0 214848.0 193498.0 True False 158659.17281211607 157990.21735439377 180689.93524944005 194050.0727394248 163817.74921237 156349.32053531197 164750.28234827548 184680.7673870855 161901.5892157034 181148.79197802785 0.8758500185381329 0.8721571677582975 0.9974669622492242 1.0712192481137925 0.9043270309649099 0.863098885883137 0.909474915892669 1.0194976481515046 0.8937492072005702 1.0 17.46681565939931 2.8644046638228966 0.008502002159127832 1.8825229310475224 1.0457212877627454e-05 0.06772317647950943 0.0678711864644797 12550.978093245012 38.22760227764398 4122.8518624323415 4339.394545756346 731.8206565438408 -2.8644046638228966 -1.8825124738346448 TGCTFPEKPDFH ddPTM_BT-474_Trastuzumab_2h_R1 2 TGCTFPEKPDFH 12 1 P55263-3;P55263-2;P55263;P55263-4;A0A5F9ZHJ1 P55263-3 ADK Adenosine kinase 0 ; 152.14 6.2753e-05 1035110000.0 2249990.0 2197030.0 2067940.0 1993510.0 2169320.0 2662100.0 2619700.0 2447090.0 3116300.0 2468570.0 False True 2237876.303837392 2270156.815417321 2359087.977143297 2245888.161600813 2445570.043432994 2478075.292909347 2492975.1027741604 2629704.281871241 2348329.62128061 2311023.7491508927 0.9683484666306972 0.9823165236841088 1.0207978079022615 0.971815266903245 1.0582193473050787 1.0722846503935028 1.078731927220618 1.1378958276986277 1.0161425741052743 1.0 21.14010065500863 3.140318999149032 4.613753124385041 1.0755232960038184 0.9881584580111044 0.4498017813302789 0.03870868592907217 0.16724222906923833 6.144474015133557 0.011392104755790212 0.0138690559539289 1381.398560625699 -3.140318999149032 -0.087364837992714 TGDDKGESNDGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGDDKGESNDGK 12 1 Q06124;Q06124-1;Q06124-3;A0A1W2PPU4 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 90.731 0.0079304 219090000.0 573970.0 311505.0 265679.0 249762.0 280819.0 325605.0 405520.0 398440.0 751970.0 444030.0 False True 570879.809294062 321873.2556162514 303084.2938767344 281381.84359132533 316579.63510538323 303096.6927417255 385903.4483631633 428173.6160373241 566657.0693817605 415691.6252467909 1.3733252599331003 0.7743077706344439 0.7291084916536316 0.6769004389354067 0.7615732814377338 0.7291383187279291 0.9283406855600165 1.0300270441655466 1.3631669126010018 1.0 18.665154157360295 1.6530189659439627 2.553969424275872 1.181993986771116 0.8251900393769355 0.2884622064158262 0.20593372835410667 0.2804401012841843 4.147653704167159 0.136810334378223 0.055802148704184505 44.9799497523227 -1.6530189659439627 -0.35680394739418053 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK ddPTM_BT-474_Trastuzumab_2h_R1 10 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 1 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 2 TGDLGIPPNPEDRS(0.999)PS(1)PEPIY(0.001)NSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(0.997)PS(0.977)PEPIY(0.015)NS(0.011)EGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;T(0.001)GDLGIPPNPEDRS(0.995)PS(0.986)PEPIY(0.006)NS(0.011)EGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(0.999)PEPIY(0.001)NSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK 204.53 2.1348000000000003e-25 26193842000.0 13824825.0 11305048.0 10284802.0 9918840.0 10819065.0 14249021.0 13435229.0 13329581.0 19090134.0 13900915.0 True False 13750393.678282455 11681329.68863417 11732812.724498454 11174564.126998436 12196808.798127696 13264019.716857528 12785315.645711105 14324302.020460837 14385626.270389935 13013746.703527912 1.0566052952724863 0.8976146497047975 0.9015706999520585 0.8586738609234733 0.9372250033744124 1.0192314341927193 0.9824469414519278 1.1007054576048914 1.1054177246657273 1.0 23.633533043055483 2.3388110967712463 1.4612563104220233 1.0719615031827678 0.9235005244724646 0.4705802716632438 0.05966740325467035 0.32272623431502306 1.3798269413966797 0.03227236850436962 0.021151740682322284 218.17807055222832 -2.3388110967712463 -0.14846097871030328 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGKR ddPTM_BT-474_Trastuzumab_2h_R1 5 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;Q15637-7;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 2 TGDLGIPPNPEDRS(0.999)PS(0.988)PEPIY(0.006)NS(0.007)EGKR;TGDLGIPPNPEDRS(0.999)PS(0.997)PEPIY(0.001)NS(0.003)EGKR;TGDLGIPPNPEDRS(0.985)PS(0.971)PEPIY(0.015)NS(0.029)EGKR;TGDLGIPPNPEDRS(1)PS(0.999)PEPIYNSEGKR;TGDLGIPPNPEDRS(1)PS(0.98)PEPIY(0.001)NS(0.02)EGKR 153.02 3.1222e-07 2528340000.0 1292510.0 1380130.0 1326460.0 1410870.0 1398260.0 1695300.0 1780700.0 1623670.0 2741040.0 1948490.0 True False 1285551.2697713615 1426066.7927437962 1513214.0382029933 1589485.9973402407 1576320.1228636696 1578107.9013069442 1694560.7380654092 1744836.5002291996 2065547.4200542343 1824135.7000137854 0.7047454143689235 0.7817767026504767 0.829551243469199 0.871363899806483 0.8641463038368018 0.8651263726130781 0.9289663801068107 0.9565277957204683 1.1323430707696935 1.0 20.798781626927056 3.027427384170068 0.37580247681040885 1.0548015667819297 0.6907248611133002 0.7880490612737311 0.0520811416900763 0.8656483040749229 0.2241411433549392 0.05572191159183316 0.1249340962399662 1065.1907444877763 -3.027427384170068 -0.3640767056686295 TGDTGMLPANYVEAI ddPTM_BT-474_Trastuzumab_2h_R1 4 TGDTGMLPANYVEAI 15 0 Q14847;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;; 136.7 4.946100000000001e-05 81113000.0 382643.0 401748.0 381465.0 394070.0 379520.0 428842.0 414482.0 365350.0 482881.0 391351.0 False True 380582.89260363387 415119.93931820546 435171.9562467809 443959.22159509215 427849.62240872195 399197.1619254837 394431.92218499864 392614.2722097094 363881.447823895 366374.6441275526 1.0387806544579945 1.133047676666408 1.1877785846317375 1.2117629555186376 1.167792665967809 1.089587307211424 1.076580840151367 1.0716196617389864 0.9931949540078173 1.0 18.482960136012387 1.8119032031186393 1.017447011499843 0.9984402936212181 1.1494967148771758 0.5871760108826198 0.046515671225535314 0.38558103713603337 0.7383261501325752 0.04233908659739051 0.017789493458955145 64.84898800332803 -1.8119032031186393 0.15105642125595764 TGEAIVDAALSALR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGEAIVDAALSALR 14 0 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 74.611 0.075752 53476000.0 119270.0 118910.0 110380.0 113250.0 122860.0 146180.0 140940.0 121590.0 187740.0 125460.0 False True 118627.86357214286 122867.84746738707 125920.54455984099 127587.438388216 138505.49275172743 136074.92067070663 134122.19375691516 130663.66322150955 141473.99258711367 117453.0353882901 1.0100025357366786 1.0461019339448832 1.0720927232196087 1.0862847262007524 1.1792414925151968 1.1585475013127937 1.1419219036231647 1.1124758316338628 1.2045154228616761 1.0 16.84172447244462 3.863857694951245 1.5054406784519199 1.1372569369257595 1.0230161413782857 0.3738745623972385 0.05278653197016356 0.4027978808288912 1.726374393419013 0.014667298525464797 0.04145166087045579 7308.995507631823 -3.863857694951245 -0.1142407955474738 TGEALKTEENK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGEALKTEENK 11 1 Q9BZZ5-2;G3V1C3;Q9BZZ5;Q9BZZ5-5;Q9BZZ5-6;Q9BZZ5-1;H0YER7;Q9BZZ5-3 Q9BZZ5-2 API5 Apoptosis inhibitor 5 0 121.04 0.00038293 225240000.0 118620.0 96803.0 84491.0 83306.0 74870.0 107260.0 114270.0 98911.0 189220.0 112870.0 False True 117981.36309992085 100025.02933635075 96386.5983910629 93852.53105844346 84404.25071074259 99845.36866288146 108742.32354620892 106292.24107988107 142589.26641809766 105666.53996713125 1.116544207244983 0.9466102454709376 0.9121771037553139 0.888195365227605 0.7987793556692352 0.9449099846927842 1.0291083968495083 1.0059214687349889 1.3494268522699016 1.0 16.68915908421692 1.4826052509502803 3.5866403488433343 1.1778101013375615 0.9404957930205292 0.37160665313388674 0.11298459935278082 0.19948274052855675 5.162232083370265 0.0771379833203892 0.02868716000309268 30.381222894504408 -1.4826052509502803 -0.23731430831703226 TGEEDEEEFFCNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGEEDEEEFFCNR 13 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 0 ; 192.38 6.429e-06 359390000.0 445510.0 436990.0 383160.0 362480.0 389700.0 500420.0 445890.0 421210.0 585110.0 457040.0 False True 443111.42366081465 451534.9479839665 437105.59751357726 408369.93083408824 439325.98506713484 465827.1432619717 424320.59723478724 452642.82906104135 440917.48057231336 427871.3159083702 1.0356184375671216 1.0553054883460895 1.021581913210524 0.954422312622475 1.0267712948563668 1.0887085110461807 0.9917014332544243 1.0578947740399032 1.0304908606370262 1.0 18.706817439717835 2.999444055744782 24.999999669740784 1.037707782839238 1.0161790981085035 0.043773067056764425 0.03514397137836536 58.465592735613676 2629365.858706801 0.01031610782653115 0.01218045203539915 998.7207100353647 -2.999444055744782 -0.02152868473073455 TGENFR ddPTM_BT-474_Trastuzumab_2h_R1 6 TGENFR 6 0 P62701 P62701 RPS4X 40S ribosomal protein S4, X isoform 0 ;;;;; 143.37 0.02654 2666980000.0 2696560.0 2737060.0 2575140.0 2516650.0 2562750.0 2815330.0 2941400.0 2570080.0 3568970.0 2834810.0 False True 2682042.0205759797 2828161.3875122922 2937697.3284818674 2835257.6319620605 2889101.0218906826 2620712.8636739696 2799113.24476082 2761872.4202018026 2689445.165247848 2653889.9987970525 1.0106078329515118 1.0656663949124616 1.10694012555662 1.0683402979201164 1.0886287763246578 0.987498677361111 1.0547208987673167 1.0406883561314508 1.0133973776105685 1.0 21.339677142941518 2.7559129521841057 24.980486212512623 1.0262621175925069 1.070083172407241 0.39677075108855764 0.02939057819123859 942.6826481769747 1357087.357552824 0.009081126871757024 0.009612431507567196 570.0500028551554 -2.7559129521841057 0.043821054814734195 TGENVEDAFLEAAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGENVEDAFLEAAKK 15 1 P61106;X6RFL8 P61106 RAB14 Ras-related protein Rab-14 0 146.76 6.1374e-06 135800000.0 251590.0 215040.0 192880.0 170440.0 199570.0 287730.0 254260.0 240560.0 437840.0 257750.0 False True 250235.4673942766 222197.47640557477 220035.82745698618 192017.68652439312 224984.05655593533 267839.90234356554 241960.47243247635 258511.8087389287 329940.19875541574 241300.17432912302 1.0370297828834811 0.9208342970465782 0.91187595727497 0.7957627343546354 0.9323824865914385 1.1099863607153615 1.0027364178463158 1.0713287276217618 1.3673433915774613 1.0 17.88046943227672 2.2863990475848794 1.138694730176802 1.1481692671209052 0.9148065233240463 0.41240005058923 0.1115046015295039 0.4891485158375555 1.231837147654242 0.0733384065956552 0.04334781334027397 193.37443045567446 -2.2863990475848794 -0.23336274379685884 TGEPS(ph)PPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 T(0.149)GEPS(0.851)PPHDILHEPPDVVS(1)DDEKDHGK 63.426 0.016366 234870000.0 101010.0 57084.0 59099.0 44948.0 49902.0 88129.0 76269.0 40428.0 152910.0 76469.0 True False 100466.17338326607 58984.00643199333 67419.62550228345 50638.41219137775 56256.72390767301 82036.84966335134 72579.57709412617 43444.94264922435 115227.37938902478 71588.68295159543 1.4033806635497974 0.8239292022158763 0.9417637358668705 0.7073521973524338 0.7858326426498292 1.145947184400926 1.013841491443567 0.6068688633173986 1.609575349597304 1.0 16.12744391759669 1.238699191787915 24.99999999877622 1.3047875613252962 0.9100824661500673 0.2552936684713284 0.25542806115591404 4.54751701288751 821774.3131669229 0.19037967331464448 0.059403580339864384 17.326035176089636 -1.238699191787915 -0.3947050951752289 TGEPSPPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 TGEPSPPHDILHEPPDVVS(1)DDEKDHGK;TGEPSPPHDILHEPPDVVS(1)DDEKDHGK 241.22 1.7000999999999998e-45 1293660000.0 955390.0 511830.0 497630.0 416050.0 466860.0 853060.0 697080.0 340280.0 1427110.0 578930.0 True False 950246.2863938084 528865.9521422312 567691.9785225003 468721.8873414328 526311.8537039843 794089.9700872421 663359.5772958028 365673.42150682845 1075417.8627942656 541982.1917530902 1.7532795373223449 0.9757995007761538 1.0474365895422677 0.8648289454406419 0.9710869871970906 1.4651587859717061 1.2239508740132337 0.6746963776134873 1.984230993486575 1.0 19.047885923263955 TGFINLDKPSNPSSHEVVAWIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGFINLDKPSNPSSHEVVAWIR 22 1 O60832;O60832-2;C9IYT0;H7C0M1;H7C2Q9 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 ; 163.64 8.9297e-12 1260930000.0 662850.0 749450.0 828370.0 753000.0 814400.0 988930.0 881730.0 845150.0 991960.0 950030.0 False True 659281.2892495589 774394.9901979082 944997.2956788855 848329.7227931715 918109.0126730159 920567.5967908199 839077.3513643014 908219.3845847421 747504.749583004 889398.2720383964 0.7412666630648648 0.8706954067080497 1.0625130780983671 0.9538243433382205 1.0322810843434829 1.035045407364 0.9434213869577626 1.0211616248176534 0.840461211904326 1.0 19.76247007619835 4.504594058867674 3.6676581606300402 0.9883798739891065 0.7537633978245659 0.6167329199066471 0.06070244708685159 0.1361302054433169 3.716417903719493 0.014044854262793482 0.06201578144389828 31959.064546345315 -4.504594058867674 -0.23461647616454062 TGFLEIDEHMR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGFLEIDEHMR 11 0 P35813;P35813-3;P35813-2;E9PL75;E9PJN3;E9PKB5 P35813 PPM1A Protein phosphatase 1A 0 ; 150.46 0.00023706 263630000.0 703760.0 737940.0 643050.0 595120.0 604040.0 747190.0 721380.0 628260.0 891860.0 670690.0 False True 699971.0343550858 762501.8868058491 733585.8505092016 670462.1309809709 680960.9135744225 695538.5139960678 686484.0934607879 675143.9514396375 672073.0533117241 627885.9899934026 1.114805944885696 1.214395445921418 1.1683424414628356 1.0678087131519143 1.0845295554079453 1.1077465098454833 1.093326024789948 1.07526519495479 1.0703743418750047 1.0 19.260143096287287 7.999999999999947 0.07918235118735253 0.9062557401229494 1.6186805880879813 0.6220135522923298 0.034145109689351215 126.68965669049302 0.7314266622697367 1.0035660131517017 9.888607388088857 99999999.99998774 -7.999999999999947 0.7124248479650319 TGFSTSPESPYTHWK ddPTM_BT-474_Trastuzumab_2h_R1 3 TGFSTSPESPYTHWK 15 0 E9PKG1;Q99873-2;Q99873-3;Q99873;Q99873-5 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ;; 174.68 8.9896e-07 4767510000.0 2207730.0 2459100.0 2555610.0 2513800.0 2359060.0 2794670.0 2940840.0 2699490.0 3202570.0 3006640.0 False True 2195843.8269818607 2540949.6569426567 2915417.674239671 2832046.8222542773 2659472.307755904 2601481.040845556 2798580.3341002264 2900939.651532469 2413339.535739388 2814753.6610859875 0.7801193608305534 0.9027254114885166 1.0357629921741873 1.0061437565238365 0.9448330575151741 0.9242304492968857 0.9942540879476035 1.0306193723585848 0.8573892518922149 1.0 21.424577236752025 4.596713277545864 3.205881865125802 0.9773388696176917 0.7765942617013258 0.567280262546473 0.051700161587089316 0.19218577881457616 3.241723714196201 0.012618376894101852 0.07750317327648823 39510.56840441009 -4.596713277545864 -0.20074460791636584 TGGEHVYFAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGGEHVYFAK 10 0 A0A087WWS1;Q96FV9;Q96FV9-2;R4GN58;R4GMN4;A0A087WY84 A0A087WWS1 THOC1 THO complex subunit 1 0 61.65 0.090212 159580000.0 158010.0 152880.0 133960.0 135110.0 133860.0 164090.0 143110.0 139550.0 191310.0 148710.0 False True 157159.2917165612 157968.5183820883 152820.4035988067 152214.91214685945 150906.27754961932 152746.84452631182 136187.22256670994 149963.92962054166 144164.21392266263 139219.20048296358 1.1288621912161674 1.1346747994104385 1.0976963168058669 1.0933471217965094 1.0839473077428419 1.0971679480733953 0.9782215534514245 1.0771785005250976 1.035519622455411 1.0 17.086998669325368 3.7455780699679018 0.24763818143208988 0.9966898407120102 1.204743341189079 0.6605658162644175 0.0287701066799587 3.6595046864622947 0.29352063432033454 0.045806491235083305 0.23069656921669482 5566.44689241848 -3.7455780699679018 0.20805350047706894 TGGIGDSRPPS(ph)FHPHAGGGSQENLDNDTETDSLVSAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQR 38 1 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 T(0.005)GGIGDS(0.045)RPPS(0.475)FHPHAGGGS(0.475)QENLDNDTETDSLVSAQR 213.73 3.5404e-32 401910000.0 34419.0 42614.0 42783.0 62937.0 51823.0 57937.0 58943.0 12118.0 55009.0 43072.0 True False 34233.69192831038 44032.38122929302 48806.47452349769 70904.81774692393 58422.35187101396 53931.951559028115 56091.70190587372 13022.306693957167 41452.76903283546 40323.108084205545 0.848984454690873 1.0919887707401303 1.210384735759371 1.7584164791775354 1.4488553746653732 1.337494903577463 1.3910560115737878 0.3229489816797622 1.0280152250731982 1.0 15.29931922485684 1.7598492776249726 24.99999999989569 0.7232885816749238 1.3118729107631997 0.39644332366911916 0.2876987792084445 9.241825488066912 10862.097362563936 0.1363180433718843 0.07559738292608696 57.52402649276877 -1.7598492776249726 0.5885843290882758 TGGIGDSRPPSFHPHAGGGS(ph)QENLDNDTETDSLVSAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQR 38 1 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 TGGIGDSRPPSFHPHAGGGS(1)QENLDNDTETDSLVSAQR;TGGIGDSRPPSFHPHAGGGS(1)QENLDNDTETDSLVSAQR 336.47 1.2049999999999992e-129 1174840000.0 268979.0 331796.0 404890.0 444690.0 402620.0 503690.0 441520.0 66920.0 387170.0 298975.0 True False 267530.8469503764 342839.6292850827 461894.9926330313 500987.70840490743 453891.2704842948 468871.0958587235 420161.99082980835 71913.91021287457 291757.1413122021 279894.15953462484 0.9558286153422969 1.2248902580000818 1.650248770467437 1.7899184078649266 1.6216532393493739 1.6751728461869564 1.5011459743511777 0.25693251453493915 1.0423838132146153 1.0 18.094521857387853 1.7607460630016671 24.999999999916522 0.7033906633045981 1.5084027288933681 0.5378216360588259 0.3046305695124223 7.817694612640198 8816.505629446447 0.1437228446394627 0.07970413879970152 57.64293199566639 -1.7607460630016671 0.80501206558877 TGGMAFHSYFMEAIAPPLLQELK ddPTM_BT-474_Trastuzumab_2h_R1 3 TGGMAFHSYFMEAIAPPLLQELK 23 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 143.95 1.5576e-07 1718634000.0 1541463.0 1323841.0 1325819.0 1110112.0 1149959.0 1775431.0 1746690.0 1528089.0 2189001.0 1660383.0 False True 1533163.9344806399 1367904.247406216 1512482.790974666 1250652.0653776517 1296399.4623090005 1652699.633885027 1662195.931696224 1642122.7606587147 1649551.0346606148 1554415.9354145955 0.9863279831029992 0.8800117241730201 0.9730232150323748 0.8045800592259603 0.8340106613505757 1.0632286997522429 1.0693379383381587 1.0564242962555102 1.0612031162821582 1.0 20.567941165520754 2.726909188819808 24.93758626485512 1.0553138875372627 0.8939708852624648 0.6653755010304662 0.05469440163817591 425.1672376511867 909985.3077296475 0.01780455814655692 0.01691807599419752 533.2233865691102 -2.726909188819808 -0.16134300227479792 TGGMAFHSYFMEAIAPPLLQELKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGGMAFHSYFMEAIAPPLLQELKK 24 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 135.86 1.6139000000000006e-05 527870000.0 451210.0 428180.0 370980.0 393080.0 370500.0 522750.0 586650.0 483830.0 832260.0 528690.0 False True 448780.7354941434 442431.7124597246 423210.75938403496 442843.88769659994 417680.97887445125 486613.5229211381 558271.4982793691 519935.8514389586 627160.6747126413 494948.55156571895 0.9067219897390781 0.8938943473218323 0.8550601028031118 0.8947271111223757 0.8438876678255959 0.9831598079876911 1.1279384423155385 1.0504846408666009 1.2671229620304632 1.0 18.916919043551143 2.442457545784565 3.162721226728992 1.1094011636854284 0.8798288950318058 0.7290695762120685 0.06662574316813225 0.1239876363692691 2.5690247267866626 0.02316868453599188 0.019506755479090487 276.9858259975974 -2.442457545784565 -0.22957226865362257 TGGPS(ph)PAGPAAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGGPSPAGPAAAR 13 0 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 T(0.09)GGPS(0.91)PAGPAAAR 67.846 0.054587 394100000.0 558070.0 501660.0 484410.0 571240.0 562840.0 547910.0 499340.0 526480.0 700040.0 567510.0 True False 555065.4131274064 518357.44984012656 552610.7174328004 643558.9254294429 634514.3377859542 510034.27134140657 475185.0165359586 565768.6110112702 527524.5220554115 531291.025930244 1.0447483319627608 0.9756563249539706 1.040128085102186 1.2113114922327695 1.1942877007473922 0.959990375234329 0.8943968434323756 1.0648939722267263 0.9929106578296938 1.0 19.019142818801953 2.7047347734114306 24.898792599567535 0.9855780855455301 1.09030513558575 0.34256006017591645 0.07662502931891939 833.3389337411581 613409.8835536374 0.027762818155282955 0.026176788441053242 506.6811801322368 -2.7047347734114306 0.10472705004021998 TGGS(ph)PSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGGSPSVR 8 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 T(0.462)GGS(0.538)PSVR 96.948 0.013227 221330000.0 757860.0 918610.0 853890.0 868740.0 886710.0 743960.0 868360.0 820800.0 1059800.0 936980.0 True False 753779.7659661616 949185.3785385295 974110.2898550688 978722.3949260811 999627.2625580692 692531.7962934667 826354.1093426611 882052.2639379476 798626.4905924302 877181.1342110643 0.8593205400434316 1.0820859472681497 1.110500729967457 1.1157586007664686 1.139590471764002 0.7894969115088516 0.9420564090059723 1.0055531628952148 0.9104464966756427 1.0 19.74251525832152 2.7617349808662035 24.999101971778217 0.9372014428095568 1.0683396713684914 0.3381134625517659 0.09173462274840012 963.6775177293904 1039555.532743979 0.02850426258227559 0.03021632796530084 577.743383984729 -2.7617349808662035 0.13113822855893464 TGHSGTLDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 TGHSGTLDPK 10 0 O60832;O60832-2;C9IYT0;H7C0M1;H7C2Q9 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 ;;; 116.77 0.0010468 667330000.0 936660.0 871510.0 805230.0 820360.0 811340.0 965510.0 948430.0 642850.0 1371260.0 855490.0 False True 931617.1266327081 900517.6835110788 918599.3848153705 924217.4918865938 914659.3398110573 898766.5662660692 902550.8175455574 690822.7313261562 1033331.3469426078 800891.8957781619 1.1632245644432837 1.1243935520612536 1.1469705083266473 1.1539853215627889 1.1420509367526521 1.122207093121863 1.1269321394101781 0.8625667645880466 1.2902257500540735 1.0 19.611247995535102 1.9651676581952224 24.973605464589525 1.0254327050707024 1.1406265251477263 0.13110993972753882 0.09930845004979542 866.2794369923176 621091.5123451238 0.038638086093393496 0.02495377917235142 92.29276520827325 -1.9651676581952224 0.11519382007702395 TGIIVTTSEAVLLQLVADKDHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGIIVTTSEAVLLQLVADKDHPK 23 1 Q96CN7 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 0 260.56 5.9399e-44 433480000.0 420460.0 345270.0 312880.0 323830.0 348560.0 485180.0 489520.0 415250.0 669900.0 468070.0 False True 418196.2900774975 356762.1032298772 356930.7843982878 364826.84479696245 392947.0499230193 451640.64859087 465840.0474520014 446238.06359677436 504812.1212001038 438197.37186511216 0.954355997840691 0.8141584731815719 0.8145434165409824 0.8325628317763281 0.8967352959021808 1.0306785882090959 1.0630827051043983 1.0183494750263753 1.1520199654586183 1.0 18.741221306075445 2.7852222166509724 2.685119625972647 1.0556661768506517 0.8487051757685448 0.7688750032199486 0.05269571139673911 0.12662772152744525 1.8074735962156026 0.017319562139602382 0.017791946289781566 609.8488604640871 -2.7852222166509724 -0.2069610010821069 TGKPEEASLDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TGKPEEASLDSR 12 1 Q9BY42;A2A2L5;A0A0A0MQR2 Q9BY42 RTFDC1 Protein RTF2 homolog 0 ;; 116.19 0.0007922000000000001 3562740000.0 6693800.0 5865100.0 5401200.0 5297000.0 5391500.0 7056700.0 7080900.0 6765300.0 9401200.0 6855900.0 False True 6657761.324551094 6060316.307972183 6161642.011927999 5967599.656886356 6078075.567075846 6568886.938685015 6738369.815335179 7270161.039497308 7084400.2296259245 6418350.592368703 1.0373009745630046 0.9442170882933357 0.9600039641421386 0.9297715310194675 0.9469840389059709 1.023454054768416 1.049860040887603 1.13271485171617 1.1037727103983914 1.0 22.61377116605783 2.358289528133332 2.175278844129571 1.0912867559505264 0.9611236090171164 0.5737864064855034 0.04311937153759922 0.18701540657471122 1.814139897143653 0.01794169564685997 0.013464567919516642 228.1862798910696 -2.358289528133332 -0.13016314693341002 TGKPLSVELGPGIMGAIFDGIQRPLSDISSQTQSIYIPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGKPLSVELGPGIMGAIFDGIQRPLSDISSQTQSIYIPR 39 2 P38606;P38606-2;C9JVW8;C9JA17 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 197.31 8.8772e-31 113750000.0 36223.0 36973.0 37465.0 34502.0 39325.0 49241.0 43043.0 32403.0 48403.0 45681.0 False True 36027.97939275362 38203.623954349525 42739.7463483823 38869.94966243024 44332.80565246361 45837.08557084601 40960.845649772185 34821.07639910006 36474.7292169706 42765.59947052827 0.8424523411061302 0.8933260477425877 0.999395469197999 0.9089069285517043 1.0366464214541262 1.0718214204487988 0.957798935520597 0.8142309900998079 0.8528988174737735 1.0 15.384163142792039 1.766063357267457 24.99999999989591 0.8701645415734597 0.9631207765086406 0.12761101531328478 0.07824401283675668 29.58256108532605 26906.93494674478 0.037303849524015595 0.020688810900612534 58.35302266631689 -1.766063357267457 0.0929562349351809 TGKPMINLYTDKDTGKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGKPMINLYTDKDTGKPK 18 3 Q92804-2;Q92804;A0A075B7D9 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 ; 126.69 1.1849e-05 4269200000.0 5285700.0 3611700.0 3406800.0 3267790.0 3025700.0 5063800.0 4971800.0 5098200.0 8549900.0 4716900.0 False True 5257242.37849648 3731913.2511812444 3886447.827563565 3681491.8789459444 3411004.960271054 4713751.42490302 4731295.0398796 5478653.572135051 6442891.707790365 4415863.403658735 1.190535552829969 0.8451151926685939 0.8801105179891829 0.8336969562726212 0.7724434948429084 1.0674586131893193 1.071431474977128 1.2406755081227712 1.4590332894926392 1.0 22.074264115101474 2.1445471851208153 1.7601351970155266 1.2536017691928476 0.9008722856993244 0.4480693044840415 0.1521443204748834 0.2955254036256835 1.7784653699426098 0.08246713681208744 0.047108049364515674 139.49132035963876 -2.1445471851208153 -0.3527294834935232 TGLFEWDNDFEDIR ddPTM_BT-474_Trastuzumab_2h_R1 6 TGLFEWDNDFEDIR 14 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 0 ;;;;; 282.92 4.7556e-33 309570000.0 596680.0 643251.0 587429.0 588270.0 598859.0 668032.0 626519.0 606893.0 734426.0 681584.0 False True 593467.5411773797 664661.2206815595 670133.8971756008 662744.9216833175 675120.1439346151 621852.5202181791 596211.8824349985 652182.4374002103 553436.5531042045 638084.725586579 0.9300763948421057 1.041650417302419 1.0502271411677495 1.0386472126786437 1.0580415372174756 0.9745610500964775 0.9343772990129366 1.0220937929530778 0.8673402307122161 1.0 19.283388473768817 2.5977128997609444 6.098597595157322 0.9627948756923496 1.026797810792048 0.2827691807611461 0.05106771487554368 0.31965550296826434 14.721807392393167 0.016230393443794577 0.015241197650703033 396.0161522243118 -2.5977128997609444 0.06400293509969834 TGLVEFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGLVEFAR 8 0 P31939-2;P31939;F8WEF0 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ; 91.069 0.02966 125905000.0 483920.0 500420.0 531570.0 447660.0 401420.0 506600.0 526500.0 446170.0 623300.0 494570.0 False True 481314.62848856585 517076.177189722 606410.4355107317 504333.71010038577 452538.4575972523 471579.9344081265 501031.1835746827 479465.47100535326 469696.0667920945 463006.1191773207 1.0395426940442518 1.1167804393351737 1.3097244515649489 1.0892592758741437 0.9773919584504248 1.0185177147248938 1.0821264834791509 1.0355488861729905 1.0144489399549637 1.0 18.820671734981584 3.4796140979408117 24.923537163736853 1.0283888547197717 1.1594922428913725 0.4425273995339368 0.06739382677935704 86.6378514096715 866211.7823734946 0.018852760524263965 0.025968841455043933 3017.2694667335036 -3.4796140979408117 0.13110338817160083 TGLYNYYDDEKEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TGLYNYYDDEKEK 13 1 P50454;E9PKH2;E9PR70;E9PPV6 P50454 SERPINH1 Serpin H1 0 ;; 192.51 2.4204e-06 2132360000.0 839820.0 719344.0 628933.0 545599.0 610737.0 895000.0 1003750.0 876146.0 1620150.0 865980.0 False True 835298.5024327742 743286.9301873695 717481.2996163644 614671.7774584745 688510.736828192 833130.756603382 955194.777802635 941528.4634992401 1220885.7413977426 810712.4149972219 1.0303265214405735 0.9168318092056312 0.8850010020123141 0.758187201882903 0.8492663046618713 1.0276526437630005 1.1782165415659858 1.1613593748930888 1.505941834382697 1.0 19.62883071065842 2.3466748105066424 2.075136830683468 1.2309146961489998 0.882507141745128 0.569716841373942 0.13233683794129703 0.22456406044138255 1.9805286261807533 0.05728237974572107 0.042031538306828195 222.16457516098077 -2.3466748105066424 -0.34840755440387183 TGMGSGS(ph)AGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGMGSGSAGK 10 0 Q86YS7;H0YFE9;Q86YS7-3 Q86YS7;Q86YS7-3 C2CD5 C2 domain-containing protein 5 1 TGMGS(0.144)GS(0.856)AGK;TGMGS(0.005)GS(0.995)AGK 103.11 0.0041633 186880000.0 582650.0 453800.0 417880.0 387980.0 374030.0 353680.0 529200.0 491070.0 702910.0 558640.0 True False 579513.0771385012 468904.45867210696 476713.8717219268 437098.2282195147 421660.5034505013 329230.9340731666 503600.57425968087 527716.1370029334 529687.2490114417 522987.11692423356 1.1080828922645465 0.8965889282891042 0.911521252235721 0.8357724580103533 0.8062540927018443 0.6295201610499004 0.962931127675634 1.0090423261408654 1.0128112755943448 1.0 18.996415882518125 2.0167535214536145 24.998301181734337 1.002713692454951 0.8585753089028464 0.25885226633810865 0.1106234422164638 330.6736991715356 493403.6471844269 0.043571942507038795 0.03217170690344975 103.93301392452948 -2.0167535214536145 -0.1441383835521045 TGNAWHSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGNAWHSK 8 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 81.33800000000002 0.02312 1102440000.0 1648960.0 1732950.0 1719350.0 1482480.0 1472000.0 1723840.0 1989430.0 1632430.0 2625600.0 1873140.0 False True 1640082.182576679 1790630.1931596028 1961419.5351418941 1670161.8159979 1659450.474772448 1604674.9982828784 1893193.6705393747 1754250.2159115805 1978556.0612374863 1753594.601524164 0.9352687224009335 1.021119813897265 1.118513670968818 0.9524218508349951 0.9463136310582336 0.9150775195636154 1.0796073784065463 1.0003738688445132 1.1282858988718336 1.0 20.74188383137673 2.2118302630413234 24.99992831680458 1.0475385500753522 0.9865687848568447 0.22173187234652603 0.06416026910980831 417.1447870726571 390137.7969363519 0.024973763492328247 0.01844934691824806 162.8659373117116 -2.2118302630413234 -0.0609697652185075 TGNQHFGYLYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGNQHFGYLYGR 12 0 Q8TAT6;Q8TAT6-2 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 ; 117.93 0.00068019 1073330000.0 1599210.0 1320570.0 1256480.0 1052610.0 918840.0 1331550.0 1199600.0 1053370.0 1952160.0 1267670.0 False True 1590600.0310489344 1364524.3741485782 1433381.46248006 1185870.3180734662 1035848.8276086386 1239503.0826315465 1141570.7650829798 1131977.8183044775 1471076.3256038108 1186766.21529311 1.3402808493803344 1.1497836360395253 1.2078044049526977 0.9992450937614342 0.8728330940502905 1.0444374525149516 0.9619171411961978 0.9538338753811754 1.2395670744978877 1.0 20.17860433138403 3.7622654002381672 4.660837505703004 0.9978274433841937 1.228399786144377 0.5118584526355869 0.09912402948392599 0.15426587151264107 8.865958600782456 0.025505175478740375 0.04533040154976164 5784.494337016244 -3.7622654002381672 0.23057234276018324 TGPFAEHSNQLWNISAVPSWSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGPFAEHSNQLWNISAVPSWSK 22 0 Q15257;Q15257-2;A6PVN5;F6WIT2;Q15257-3;Q15257-4;A6PVN9;H0Y6E5;Q68CR8;B7ZBQ0;B4DDQ6;B7ZBP7;B7ZBP9 Q15257 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator 0 ; 277.14 1.7078e-45 1135400000.0 3167900.0 2913700.0 2851900.0 2797700.0 2788300.0 3333700.0 3433200.0 3206300.0 4076500.0 3447500.0 False True 3150844.37838678 3010680.743131159 3253422.730840822 3151888.5331453565 3143373.477451095 3103249.1656856923 3267122.9999023746 3445570.387261504 3071901.1973014176 3227477.598446755 0.9762560024903487 0.9328277737946403 1.0080388264837385 0.9765795228639924 0.973941222384894 0.9615091262536265 1.0122837108070708 1.0675737575745552 0.9517962878440397 1.0 21.621975651309953 2.1700037546136395 6.121762402821565 1.019966726172875 0.9718171441538409 0.2029057731880065 0.032131973047528926 0.2392326789714429 16.026802812571287 0.012015056496249548 0.008874178138905647 147.91211755849622 -2.1700037546136395 -0.04814958201903419 TGPPPIS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 4 TGPPPISPSK 10 0 Q14135-4;G5E9M7;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;E7ERW0;E7EWF5;F8W708;E7EQU6;F8WBN7;E7EUJ2;A0A096LP98 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 TGPPPIS(1)PSK;TGPPPIS(1)PSK;TGPPPIS(1)PSK;TGPPPIS(1)PSK 199.12 2.9823e-07 3307590000.0 2329170.0 1877610.0 1667270.0 1561210.0 1529530.0 2220700.0 2215960.0 1835500.0 3037240.0 2058710.0 True False 2316630.007515113 1940105.1138107888 1902007.1238293715 1758859.0259255338 1724306.5792654199 2067188.2359655078 2108765.54901074 1972474.3304801441 2288752.898930887 1927321.3652496932 1.201994669537108 1.0066329096909272 0.9868655835623749 0.9125925015092985 0.8946647976592259 1.072570601477089 1.094143191183656 1.0234278341145258 1.1875304970919414 1.0 20.878165718745276 2.5440460786066943 24.99951050578267 1.074229573599278 0.9940788083797681 0.14550404389038885 0.09015891688533846 358.632380383557 133964.55511906065 0.029734708665606364 0.02803413885861602 349.9822981498614 -2.5440460786066943 -0.08015076521950981 TGQAGSLSGS(ph)PKPFSPQLSAPITTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 TGQAGS(0.004)LS(0.061)GS(0.923)PKPFS(0.012)PQLSAPITTK;TGQAGSLS(0.007)GS(0.993)PKPFSPQLSAPITTK 230.32 1.5383e-34 8031500000.0 2421730.0 1482510.0 1368280.0 1366230.0 1165650.0 2072150.0 2477740.0 1910470.0 3297390.0 1937790.0 True False 2408691.6747594955 1531854.4491537795 1560921.93069704 1539194.5779172818 1314088.6181511572 1928907.1478164222 2357882.2503140275 2053038.9725700929 2484792.4172622925 1814118.5831745141 1.3277476440071199 0.8444070103031509 0.8604299328468336 0.848453123292445 0.7243675415372474 1.0632751164706336 1.2997398693683988 1.1317005357927008 1.369696799486046 1.0 20.790837332669234 2.4818116906828784 8.110450988249537 1.2033306463046183 0.907671304912564 0.362672936615438 0.17414577747892176 0.1231046637021066 73.87232614903687 0.0571686614680028 0.0502449023827958 303.25759795132967 -2.4818116906828784 -0.2956593413920543 TGQIWPNDGEGAFHGDADGS(ph)FGTPPGYGCAADR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 33 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 TGQIWPNDGEGAFHGDADGS(0.641)FGT(0.294)PPGY(0.065)GCAADR 48.798 0.052185 135360000.0 62847.0 83507.0 75396.0 81871.0 89692.0 80962.0 90906.0 62133.0 76997.0 79412.0 True False 62508.638734958135 86286.4800139526 86011.10144621991 92235.86020557716 101113.7445538656 75365.28750404812 86508.52948535641 66769.6799649811 58022.12105694034 74343.8581719662 0.8408043417704822 1.160640329082218 1.1569362091387023 1.2406655031572968 1.360082016727965 1.0137392564389007 1.1636271188031684 0.8981196511288784 0.7804561463938051 1.0 16.181925940242103 1.690800457877559 4.713522571938266 0.874180344302652 1.144243772954297 0.38643199526889505 0.13815236888619645 0.1554324162317845 8.071246777303797 0.07462713767702348 0.03624354048546853 49.068237409510786 -1.690800457877559 0.2700634286516449 TGQIWPNDGEGAFHGDADGSFGT(ph)PPGYGCAADR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 33 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 TGQIWPNDGEGAFHGDADGS(0.098)FGT(0.902)PPGYGCAADR;TGQIWPNDGEGAFHGDADGS(0.258)FGT(0.742)PPGYGCAADR 155.99 2.0763e-10 734510000.0 348240.0 344650.0 327210.0 383660.0 366420.0 370630.0 401560.0 390310.0 416010.0 402460.0 True False 346365.1145331015 356121.4669046757 373278.323839695 432231.31666245445 413081.4150585054 345009.2204691748 382135.00869183213 419436.91415402136 313489.9097484023 376774.65823665896 0.9192898380005784 0.9451842344476081 0.9907203567954196 1.1471878673723384 1.0963619925813628 0.9156911510021681 1.0142269399971329 1.1132301628698327 0.8320355493534644 1.0 18.52334240736576 4.165091171168964 3.7248637579455 1.0281372149672725 0.9298280819440049 0.11354427383387455 0.0887379641370183 0.402844519046502 10.87735264633246 0.02248333148219388 0.05679178930694527 14624.841606180367 -4.165091171168964 -0.0983091330232676 TGQLEGAPAPGPAAS(ph)PQTLDHSGATATGGASELK ddPTM_BT-474_Trastuzumab_2h_R1 8 TGQLEGAPAPGPAASPQTLDHSGATATGGASELK 34 0 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 TGQLEGAPAPGPAAS(0.901)PQT(0.095)LDHS(0.003)GATATGGASELK;TGQLEGAPAPGPAAS(0.95)PQT(0.049)LDHS(0.001)GATATGGASELK;TGQLEGAPAPGPAAS(0.995)PQT(0.005)LDHSGATATGGASELK;TGQLEGAPAPGPAAS(0.913)PQT(0.087)LDHSGATATGGASELK;TGQLEGAPAPGPAAS(0.945)PQT(0.055)LDHSGATATGGASELK;TGQLEGAPAPGPAAS(1)PQTLDHSGATATGGASELK;TGQLEGAPAPGPAAS(0.914)PQT(0.049)LDHS(0.036)GAT(0.001)ATGGASELK;TGQLEGAPAPGPAAS(0.997)PQT(0.003)LDHSGATATGGASELK 355.92 2.3200999999999988e-132 38640310000.0 12683216.0 10444309.0 9738686.0 9144675.0 9509781.0 14019242.0 13840605.0 12215274.0 15205733.0 12888596.0 True False 12614930.974293772 10791941.511346873 11109808.338623833 10302389.917375347 10720795.241461955 13050124.798285928 13171082.059904393 13126839.773784524 11458483.848533235 12066034.768797815 1.0454910180530372 0.8944066313528546 0.9207505656583439 0.8538339325871024 0.8885102228600746 1.0815586933358523 1.0915833007513103 1.0879166209374682 0.9496478394181594 1.0 23.524448308882356 2.738477432201084 24.999817822741665 1.0549603285214713 0.9154426775048874 0.4788801632530034 0.06257031971581746 5.873123802710071 1764795.5428477267 0.019758428979141957 0.019757688782402458 547.617643667393 -2.738477432201084 -0.13951765101658387 TGQPAQPAPSAQQPPRPPAS(ph)PDEPSVAASSVGSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSR 35 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 TGQPAQPAPSAQQPPRPPAS(1)PDEPSVAASSVGSSR;TGQPAQPAPSAQQPPRPPAS(0.999)PDEPS(0.001)VAASSVGSSR 264.82 1.8542999999999997e-60 444170000.0 196899.0 173800.0 184784.0 173189.0 172846.0 200918.0 216031.0 182596.0 190273.0 184663.0 True False 195838.91766153535 179584.82793568127 210799.9810286792 195114.70964253182 194856.91356149362 187029.01157009896 205580.75521143829 196222.24072370064 143382.7686775746 172877.64924205167 1.1328180277794897 1.038797257615637 1.2193593674653178 1.1286288915772178 1.1271376861948652 1.08185767443097 1.1891690806345818 1.1350353361698218 0.8293886995005334 1.0 17.399391834382847 1.252466986002338 24.99241603808634 0.9146943787325498 1.1325155791965846 0.6722025313911484 0.06058498777103876 104.22098517263953 187307.03698232924 0.03806625662964618 0.013745548124157795 17.88409573446053 -1.252466986002338 0.21782120046403486 TGQPMIHIYLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGQPMIHIYLDK 12 0 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A0A0D9SFL3;C9JGE3;Q01844-2;H7BY36 B0QYK0 EWSR1 RNA-binding protein EWS 0 ; 127.71 0.00026487 3512600000.0 5771800.0 5278200.0 4769900.0 4273000.0 4699300.0 6160200.0 5546900.0 5323200.0 7153400.0 5207400.0 False True 5740725.270107264 5453881.6962607205 5441460.459285971 4813961.361879441 5297728.000066687 5734359.873551009 5278575.255784251 5720444.214661893 5390540.420649076 4875059.273720564 1.1775703530525563 1.1187313610032086 1.1161834459364715 0.9874672473890775 1.0867002230361702 1.1762646465577518 1.0827715027464127 1.1734101871332008 1.1057384368036831 1.0 22.21698832939316 TGQPMIHIYLDKETGKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGQPMIHIYLDKETGKPK 18 2 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A0A0D9SFL3;C9JGE3;Q01844-2;H7BY36 B0QYK0 EWSR1 RNA-binding protein EWS 0 ; 161.51 2.2771e-11 2694000000.0 3539830.0 2974000.0 2977240.0 2881650.0 2785440.0 3831250.0 4040220.0 3639320.0 6542340.0 3959440.0 False True 3520771.948592088 3072987.792179037 3396409.5133660124 3246466.5945377657 3140149.2734036455 3566404.705292409 3844779.123460787 3910904.538492509 4930067.969864579 3706745.149352868 0.949828436197388 0.8290259158268612 0.9162781298733109 0.8758267600632165 0.8471446368391039 0.9621391710501165 1.0372385930368093 1.0550778057065195 1.3300261472589452 1.0 21.821721497968213 2.041551290233684 1.424187052502779 1.1488794746760982 0.8829830206702971 0.6119392997591544 0.08550842546198764 0.25926156575926984 0.9844126744454467 0.05422092692360764 0.026609248906571865 110.04017952143457 -2.041551290233684 -0.2658964540058011 TGRDT(ph)PENGETAIGAENSEK ddPTM_BT-474_Trastuzumab_2h_R1 5 TGRDTPENGETAIGAENSEK 20 1 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 T(0.02)GRDT(0.98)PENGETAIGAENSEK;TGRDT(1)PENGETAIGAENSEK;TGRDT(1)PENGETAIGAENSEK;T(0.104)GRDT(0.896)PENGETAIGAENSEK;T(0.011)GRDT(0.989)PENGETAIGAENSEK 257.53 5.1513e-36 4980090000.0 5926430.0 4165310.0 4181340.0 3620660.0 4232750.0 5561810.0 5266520.0 4949350.0 7053860.0 5399030.0 True False 5894522.759368272 4303949.825366933 4770036.327141192 4079035.18476537 4771765.623025188 5177335.165792465 5011758.307539863 5318695.629290057 5315530.719881416 5054459.283057863 1.1662024420942974 0.8515153816340797 0.9437283119739368 0.8070171221752571 0.9440704446902479 1.0243103912512408 0.9915518212479957 1.0522778662235728 1.051651704406571 1.0 22.269125332792573 2.764101406956675 4.908071118124237 1.0269370808297469 0.9291593481322155 0.163792987330029 0.08981107131036464 0.3056461506762177 20.35474410901468 0.027521807366303466 0.02829951373016423 580.9000407697833 -2.764101406956675 -0.09777773269753143 TGS(ph)CSELDACPSK ddPTM_BT-474_Trastuzumab_2h_R1 3 TGSCSELDACPSK 13 0 A0A1B0GUA8;Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9;H0Y9Z7 A0A1B0GUA8 KIF13A Kinesin-like protein KIF13A 1 T(0.011)GS(0.989)CSELDACPSK;T(0.029)GS(0.971)CSELDACPSK;T(0.002)GS(0.998)CSELDACPSK 219.26 1.6881e-07 221130000.0 951440.0 652240.0 516360.0 520910.0 549470.0 776770.0 679600.0 646400.0 1119210.0 672390.0 True False 946317.5527549216 673949.4141125942 589058.9997184218 586857.1525898939 619441.747536153 723073.7182198993 646725.1516758874 694637.6503526914 843395.6921456441 629477.4945379583 1.5033381828043377 1.0706489429098314 0.9357904052642836 0.9322925087586362 0.9840570201653172 1.1486887529643002 1.027399958358462 1.1035146711044233 1.33983454446565 1.0 19.263795273193033 -0.4246866097094252 7.651313298460051 0.999998315588241 1.0974460890485924 0.02927978736538872 0.17264214056251959 0.0 0.0 0.164648197044859 0.03880795221351957 0.3761087093713432 0.4246866097094252 0.09744777346035138 TGS(ph)ESS(ph)QTGTSTTSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 T(0.004)GS(0.995)ES(0.001)S(0.999)QTGTSTTSSR;T(0.001)GS(0.999)ESS(1)QTGTSTTSSR 219.85 1.7586e-14 480590000.0 1422650.0 700270.0 557680.0 666160.0 619330.0 905470.0 736930.0 796270.0 1437120.0 836480.0 True False 1414990.6104712745 723578.0636278454 636196.4965585439 750495.787697077 698198.0044434906 842876.9901471114 701281.8805540185 855691.7107771316 1082961.0324213938 783095.1302534416 1.8069204567947263 0.9239976545297452 0.8124127861102196 0.9583711591389744 0.8915877234704872 1.0763404822531866 0.8955257841113825 1.0927046762507573 1.382923977666549 1.0 19.578828050929317 4.741728142894531 24.974155775598902 0.9975104401994168 1.8069207590860221 0.719099983588928 0.1505468653701165 159.1248105679231 1254549.5946350868 0.03659328899667374 0.26151244715410604 55173.19612338114 -4.741728142894531 0.8094103188866053 TGS(ph)ESSQTGTSTTSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 TGS(0.952)ES(0.034)S(0.014)QTGTSTTSSR;T(0.003)GS(0.994)ES(0.002)SQTGTSTTSSR;T(0.001)GS(0.996)ES(0.003)SQTGTSTTSSR;T(0.005)GS(0.978)ES(0.016)SQTGTSTTSSR 346.73 4.4878999999999975e-87 1595550000.0 400389.0 336126.0 297712.8 294806.0 308271.0 381434.0 380231.0 352171.0 458918.0 358315.0 True False 398233.3501113998 347313.75071754196 339628.1744739537 332128.40937285963 347527.48458463146 355066.3653790556 361837.77390652447 378451.7883081033 345823.80808614596 335447.029931095 1.1871720855397105 1.035375840975204 1.012464395775743 0.9901068715411877 1.0360130022794296 1.0584871341743305 1.0786733571045493 1.128201338929255 1.0309341780643653 1.0 18.355725444471574 2.420566298229782 4.182602502452203 1.0764027531235665 1.0457045227955502 0.0 0.05916958083338035 0.7483719723064218 27.144050173527553 0.021429836236108293 0.01795540906544138 263.3699966555826 -2.420566298229782 -0.03069823032801633 TGS(ph)NAAQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSNAAQYK 9 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 T(0.002)GS(0.998)NAAQYK 100.38 0.004932 141900000.0 284080.0 162340.0 140160.0 156200.0 131160.0 197850.0 191640.0 194340.0 333370.0 199680.0 True False 282550.54484425485 167743.38876339767 159893.30970744058 175974.90398445327 147862.448553773 184173.09518880353 182369.64106410663 208842.63763852435 251215.43042913626 186936.2514453511 1.5114807462952449 0.8973293701272047 0.8553360221528982 0.9413631792862698 0.7909779264884803 0.9852187243769818 0.9755712958511984 1.1171863992339515 1.3438561460754257 1.0 17.512186843996133 -0.23139346236363667 6.973161332776416 0.9999998950971817 1.0272640998377252 0.0 0.21374627148831413 0.0 0.0 0.20327631737588153 0.047912687490371565 0.5869573396225131 0.23139346236363667 0.027264204740543474 TGS(ph)PGDAPERPPLCDFSEGLSAPMDFYR ddPTM_BT-474_Trastuzumab_2h_R1 5 TGSPGDAPERPPLCDFSEGLSAPMDFYR 28 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 T(0.058)GS(0.942)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.031)GS(0.969)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.039)GS(0.961)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.008)GS(0.992)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.011)GS(0.989)PGDAPERPPLCDFSEGLSAPMDFYR 303.1 6.1611e-72 791097000.0 316201.0 254905.0 252406.0 252816.0 248116.0 302548.0 278768.0 314428.0 401064.0 290418.0 True False 314498.6089492335 263389.35883167374 287942.57084771874 284822.4796781913 279712.10190125013 281633.5688813859 265282.92684282473 337892.21399303206 302227.1511822632 271883.2746006411 1.1567412869040525 0.9687589617954847 1.0590668781324137 1.0475910299982818 1.0287948102438758 1.0358620599044448 0.9757235976817207 1.2427841120030239 1.1116062642183233 1.0 18.052627878492068 1.7526358123949348 24.999999999708393 1.1415189055577997 1.0368339346017608 0.17397173258490006 0.07389117618138545 5.239275708920816 9318.810734230387 0.031503801814089634 0.01747068443783084 56.576465512236425 -1.7526358123949348 -0.1046849709560389 TGS(ph)PGPELLFHEGQQK ddPTM_BT-474_Trastuzumab_2h_R1 3 TGSPGPELLFHEGQQK 16 0 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 T(0.084)GS(0.916)PGPELLFHEGQQK;T(0.014)GS(0.986)PGPELLFHEGQQK;T(0.078)GS(0.922)PGPELLFHEGQQK 238.65 5.454299999999999e-20 758240000.0 1495830.0 1120640.0 1001410.0 832290.0 877910.0 1345860.0 1293610.0 1169400.0 1839570.0 1200180.0 True False 1487776.6174823372 1157939.8249588155 1142399.8235882432 937657.8286633847 989706.6347197541 1252823.8660136634 1231033.142229907 1256666.5660928811 1386232.6224751056 1123583.4848742073 1.3241353557710078 1.0305774698071988 1.0167467206196454 0.83452439563791 0.8808483286229135 1.115025169806519 1.095631218153522 1.118445209466187 1.2337602333397626 1.0 20.09967589343193 2.536211236386067 24.986625126779362 1.1186312610002735 1.0069108643506117 0.11155848828807047 0.13219462194166384 529.8144030322446 224034.70650897294 0.044411931713938015 0.04187187576063188 343.72509161071906 -2.536211236386067 -0.11172039664966182 TGS(ph)QEGTSMEGSRPAAPAEPGTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSQEGTSMEGSRPAAPAEPGTLK 24 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 1 T(0.159)GS(0.838)QEGT(0.001)S(0.001)MEGSRPAAPAEPGTLK 99.446 2.33e-05 0.0 511690.0 393260.0 274630.0 242350.0 254650.0 351500.0 390370.0 363490.0 527880.0 359720.0 True False 508935.1178941034 406349.4213693099 313295.5168732482 273031.48515129497 287078.1680711982 327201.632341999 371486.3117417828 390615.4695648201 397791.04722960247 336762.361628214 1.511258905043457 1.2066355022712427 0.9303163077919223 0.8107541586037516 0.8524651231307517 0.9716098638814925 1.1031111373185585 1.1599142721182718 1.181221812634644 1.0 18.36137137849825 4.5866684678278276 2.878327650674019 1.0081861620802106 1.5281255223020342 0.6464136975365984 0.1164441338419896 0.23005194014870853 3.1067633101175947 0.03449795342554386 0.23042051809117528 38607.21443794273 -4.5866684678278276 0.5199393602218236 TGS(ph)QGQCTQVR ddPTM_BT-474_Trastuzumab_2h_R1 3 TGSQGQCTQVR 11 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 T(0.351)GS(0.649)QGQCTQVR;T(0.003)GS(0.997)QGQCTQVR;T(0.122)GS(0.878)QGQCTQVR 169.54 1.7586e-05 386944000.0 237655.0 217144.0 188499.0 207631.0 225189.0 220496.0 215644.0 179159.0 238508.0 210100.0 True False 236375.49188595268 224371.50677368024 215038.02073732033 233917.06331111368 253865.48435022598 205253.63051175344 205212.47587992199 192528.75433096825 179730.8992434605 196691.23812434016 1.201759133452227 1.1407295460301172 1.093277071149362 1.1892602107839745 1.2906801887623616 1.0435321495205623 1.0433229148224439 0.9788374722073764 0.9137717620641647 1.0 17.585573166694292 TGS(ph)TSSKEDDYESDAATIVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGSTSSKEDDYESDAATIVQK 21 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 T(0.023)GS(0.95)T(0.023)S(0.003)S(0.001)KEDDYESDAATIVQK;T(0.159)GS(0.81)T(0.014)S(0.014)S(0.002)KEDDYESDAATIVQK 276.23 5.125999999999999e-45 288650000.0 451640.0 269650.0 224230.0 195534.0 212062.0 317570.0 272250.0 239720.0 441300.0 248290.0 True False 449208.4204219215 278625.13724313263 255799.63495790135 220288.5843514471 239066.8387100509 295617.1333793698 259080.22740400254 257609.1236734952 332547.5281170405 232443.91962823612 1.9325453689662953 1.1986768149872769 1.1004789256996683 0.9477063745258215 1.0284925460403838 1.2717783018466176 1.1145924049911382 1.1082635505609593 1.4306570318075307 1.0 17.826523162126676 4.739612304676015 3.8945959013368356 1.1240368632789637 2.010872972855266 0.7706992924494792 0.13130427826795535 0.111262170465584 3.4022583446056345 0.03140763453774154 0.28167780169009005 54905.051681350385 -4.739612304676015 0.8868361095763024 TGSDHTNPTS(ph)PLLVKPSDLLEENKINSSVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSDHTNPTSPLLVKPSDLLEENKINSSVK 30 2 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;Q96D71;Q96D71-3;H0YE73 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 1 TGSDHTNPT(0.006)S(0.994)PLLVKPSDLLEENKINSSVK 157.78 3.7843e-10 1230700000.0 308820.0 289300.0 325730.0 297640.0 341740.0 484080.0 486920.0 397570.0 664140.0 485440.0 True False 307157.3474331276 298929.1756144572 371589.95270408544 335321.1934822832 385258.5633483256 450616.68900174845 463365.81938496535 427238.69221955433 500471.5960200576 454458.8035939068 0.6758750078205016 0.6577695783435037 0.8176537669982714 0.7378472830332009 0.8477304439954984 0.9915457362432535 1.0195991709713201 0.9401043369407897 1.1012474443498002 1.0 18.79378999538092 3.1032100843795956 0.9071515820131577 1.0212689544787967 0.6810446922707398 0.8684312436796024 0.05319459500966772 0.19821367868415918 0.35942291966876644 0.026700551418541902 0.03800021903126114 1268.2652245124532 -3.1032100843795956 -0.3402242622080569 TGSELMEILDGMDQSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGSELMEILDGMDQSHR 17 0 E9PQ42;E9PJD7;Q6ZMK1-4;Q6ZMK1-2;Q6ZMK1 E9PQ42 CYHR1 Cysteine and histidine-rich protein 1 0 ; 128.45 3.6893e-05 91991000.0 105619.0 115491.0 103443.0 113680.0 112966.0 110101.0 107074.0 116718.0 135257.0 106217.0 False True 105050.35903937409 119335.04811921614 118006.87525732587 128071.87634412694 127351.55049805979 102489.97701987595 101894.42155759854 125428.08984199488 101924.72470094383 99438.14012305111 1.056439298938798 1.2000933240660305 1.1867365490876702 1.287955267321398 1.28071130795957 1.0306908083060313 1.024701602740235 1.2613680192206145 1.0250063464060737 1.0 16.601511692227618 2.7354251391627633 24.906256773924238 1.0953207118232304 1.2061440204472607 0.3243281422287201 0.09265207709781267 395.41192855806423 3140896.3282616325 0.031014369281464383 0.03037483830149648 543.7823899958933 -2.7354251391627633 0.11082330862403023 TGSEPALS(ph)PAVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSEPALSPAVVR 13 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 TGSEPALS(1)PAVVR 160.44 4.6007e-05 215090000.0 234620.0 254360.0 226510.0 217190.0 179930.0 261330.0 221290.0 210600.0 299160.0 227060.0 True False 233356.8319887323 262826.2188361327 258400.63913978598 244686.2317310077 202843.01897133593 243264.8722046504 210585.35729010732 226316.04140513137 225436.0265386222 212568.8364041539 1.0977941825162674 1.2364287413062995 1.215609228101963 1.1510917398342881 0.9542462686565851 1.1444051551476464 0.9906690032857148 1.0646717798974075 1.0605318745312418 1.0 17.697570580898187 3.413414408975749 7.440572727095729 1.0427771104350871 1.1877936154153637 0.575258469759484 0.05896325487763345 0.15036301024048715 14.827497217444117 0.01521473629163318 0.020664590211875604 2590.6837974792293 -3.413414408975749 0.14501650498027652 TGSES(ph)SQTGTSTTSSR ddPTM_BT-474_Trastuzumab_2h_R1 5 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 TGS(0.017)ES(0.966)S(0.017)QTGTSTTSSR;TGS(0.013)ES(0.986)S(0.001)QTGTSTTSSR;TGS(0.02)ES(0.978)S(0.002)QTGTSTTSSR;TGS(0.29)ES(0.7)S(0.01)QTGTSTTSSR;T(0.005)GS(0.038)ES(0.956)S(0.002)QTGTSTTSSR 366.03 3.7605999999999977e-104 17302200000.0 1798353.0 1480907.0 1326394.0 1274649.0 1397646.0 1649642.0 1638032.0 1572074.0 2136532.0 1539767.0 True False 1788670.8672637995 1530198.0942678135 1513138.7459766753 1436019.432707293 1575627.933603132 1535606.1313795734 1558794.1342700943 1689390.144710019 1610012.3166620359 1441497.7517991478 1.240841940288385 1.0615334587639542 1.0496989982038554 0.9961995645952154 1.0930491786314442 1.0652851379497248 1.081371186548538 1.171968629573979 1.1169024125445657 1.0 20.45913715609057 1.958813545437366 24.576430872689148 1.118215969358414 1.0777900666107503 0.0 0.07179945126292454 1266.1666200624898 755533.9884661301 0.029083753288943196 0.018751762606837048 90.9522705691496 -1.958813545437366 -0.04042590274766367 TGSGS(ph)PFAGNS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 6 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 TGSGS(1)PFAGNS(1)PAR;TGSGS(1)PFAGNS(1)PAR;TGSGS(1)PFAGNS(1)PAR;TGS(0.022)GS(0.978)PFAGNS(1)PAR;TGSGS(1)PFAGNS(1)PAR;TGSGS(1)PFAGNS(1)PAR 246.35 1.4651e-17 3407280000.0 4152450.0 4049070.0 3580790.0 3472140.0 3642140.0 4195830.0 3998920.0 3905010.0 4760700.0 4046190.0 True False 4130093.6705805664 4183840.847235496 4084934.1072153663 3911712.5679934653 4105944.9403449204 3905782.148021419 3805476.9622421106 4196421.6754389955 3587489.275111706 3787958.69008246 1.0903217295885184 1.104510684921017 1.0783998563422668 1.0326703346145285 1.0839465992844652 1.031104736766914 1.0046247262953305 1.1078319535072976 0.9470771908110777 1.0 21.85298916677827 7.999999999985202 0.12278470760709381 0.9747919480544005 1.3910824513083464 0.39140283788249275 0.03952709560205394 100.46189155615178 0.8434062987208512 0.24357506754910674 7.182181898230061 99999999.99659264 -7.999999999985202 0.4162905032539459 TGSGS(ph)PFAGNS(ph)PAREGEQDAASLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSGSPFAGNSPAREGEQDAASLK 24 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 T(0.208)GS(0.251)GS(0.556)PFAGNS(0.985)PAREGEQDAASLK 53.06399999999999 0.025112 0.0 92727.0 87760.0 72486.0 100490.0 96801.0 117970.0 128130.0 124000.0 173970.0 130140.0 True False 92227.7681349383 90681.03854795982 82691.39874039347 113212.02369652822 109128.03356552152 109815.01157150949 121931.8623958672 133253.50965924156 131097.42457856674 121834.35378154034 0.7569931244541319 0.744297775901195 0.6787198862536455 0.929229073595509 0.8957082315321148 0.9013468546680801 1.0008003376001953 1.0937268965876141 1.0760300400463068 1.0 16.894561463527314 3.026743351955574 0.7095473119218384 1.0693725455639829 0.7129760366693768 0.824060309497038 0.05668348306093315 0.2844960707950421 0.318436297302763 0.03793625142386955 0.05299047536373708 1063.5143444692883 -3.026743351955574 -0.35639650889460606 TGSGS(ph)PFAGNSPAR ddPTM_BT-474_Trastuzumab_2h_R1 6 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 TGS(0.002)GS(0.997)PFAGNS(0.001)PAR;TGS(0.002)GS(0.998)PFAGNSPAR;TGSGS(1)PFAGNSPAR;TGSGS(1)PFAGNSPAR;TGS(0.011)GS(0.989)PFAGNSPAR;TGSGS(0.999)PFAGNSPAR 240.31 2.2598999999999998e-17 2292180000.0 1607810.0 1772310.0 1600410.0 1618650.0 1578790.0 1801570.0 1746870.0 1648150.0 1994940.0 1725720.0 True False 1599153.7296044843 1831300.266965979 1825733.8169869073 1823570.9240360786 1779839.5482785269 1677031.7063396135 1662367.2244085567 1771143.3221361216 1503313.7678264421 1615583.0721367765 0.9898307039633916 1.1335228120110803 1.1300773376959097 1.1287385684378437 1.10167008987319 1.0380349579434283 1.0289580604542379 1.0962873730742924 0.9305084917968058 1.0 20.623623504191436 2.7167787406940005 4.773572951861089 1.0307746773715543 1.1027355347346757 0.3205898707763154 0.05515941678154796 0.2633799458926809 16.44448695624045 0.01778884560230871 0.01737619886620883 520.9292465087665 -2.7167787406940005 0.07196085736312141 TGSGSPFAGNS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 6 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR 335.58 1.4236999999999995e-68 12534900000.0 2731140.0 2672310.0 2571290.0 2613330.0 2632880.0 2843210.0 2923330.0 2778410.0 3276300.0 2728180.0 True False 2716435.8456981806 2761256.222904492 2933305.28194667 2944177.3100492386 2968161.6616976066 2646665.5848964285 2781917.359694923 2985749.0626801066 2468899.7651707684 2554065.2166875927 1.063573407581647 1.0811220500021566 1.1484848792353546 1.1527416335388603 1.1621322910254666 1.03625607036336 1.0892115602681576 1.169018333271995 0.966654942497014 1.0 21.284363933280442 -0.5071152328294888 9.925065369470566 0.9999998757299019 1.1040190622380959 0.17281997902860535 0.06147622398538131 0.0 0.0 0.05752282760637685 0.013558260491164606 0.3110890804370303 0.5071152328294888 0.10401918650819397 TGSNIS(ph)GASSDISLDEQYK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSNISGASSDISLDEQYK 19 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 T(0.001)GS(0.001)NIS(0.963)GAS(0.027)S(0.007)DISLDEQYK 163.41 2.6996e-11 102060000.0 166490.0 124860.0 123760.0 122390.0 119240.0 162630.0 150870.0 147350.0 203150.0 166850.0 True False 165593.6363387779 129015.88962053623 141184.33225879594 137884.5614510707 134424.50720914843 151387.7708898413 143571.8417206312 158346.00522813923 153086.40457053448 156201.49015252825 1.0601284032378844 0.8259581230278551 0.9038603416710795 0.8827352499417813 0.8605840256574061 0.9691826290646368 0.9191451475938904 1.0137291588800907 0.9800572607921222 1.0 17.253048691203567 2.0431107129821964 1.4758460054019675 0.9997092142722211 0.9038160066378739 0.24942285861012603 0.06140280693816016 0.500983831975073 2.04570657359737 0.038237036590565675 0.018933110315938653 110.43601141958233 -2.0431107129821964 -0.09589320763434728 TGSQEGT(ph)SMEGSRPAAPAEPGTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSQEGTSMEGSRPAAPAEPGTLK 24 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 1 T(0.001)GS(0.252)QEGT(0.373)S(0.373)MEGSRPAAPAEPGTLK 220.78 1.5846999999999998e-32 1966100000.0 1996200.0 1437000.0 1213400.0 1090400.0 1104200.0 1669800.0 1438700.0 1310200.0 2084500.0 1412100.0 True False 1985452.6809986718 1484829.6763151556 1384236.172938131 1228444.5281987705 1244813.3248938436 1554370.6562864017 1369104.5846322824 1407973.7770607914 1570802.9058689598 1321978.5690403655 1.5018796276250737 1.1231874034032223 1.0470942610990728 0.9292469310531318 0.9416289749670173 1.1757911154450342 1.0356480934680552 1.065050379812776 1.188221157782624 1.0 20.334267358431656 4.745405301704955 2.8290827064102215 1.047625574063376 1.5884568100801293 0.7409486512140107 0.08014728729820053 0.2196040658305396 2.415874273562503 0.020248298469463827 0.27621257807331384 55642.329243943204 -4.745405301704955 0.5408312360167533 TGSQEGTS(ph)MEGSRPAAPAEPGTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSQEGTSMEGSRPAAPAEPGTLK 24 1 Q8IV36-2;Q8IV36;Q8IV36-3 Q8IV36-2 HID1 Protein HID1 1 T(0.013)GS(0.088)QEGT(0.178)S(0.719)MEGS(0.001)RPAAPAEPGTLK 178.11 2.4756e-17 1530200000.0 941270.0 668500.0 563750.0 544800.0 532190.0 783360.0 769970.0 609430.0 1046000.0 697060.0 True False 936202.306904929 690750.6183832166 643121.0997971572 613771.6241403974 599961.241962736 729208.1670310895 732723.6095289614 654908.761222835 788227.3156819049 652573.0340169092 1.4346322298090401 1.0585031596100523 0.9855158982565205 0.9405408929669221 0.9193779250571823 1.1174353352335957 1.12282238360155 1.0035792579284932 1.2078760147810226 1.0 19.315779847257538 4.736743596311328 4.92216632988979 1.0346261799135081 1.4547929990555875 0.6636592619368382 0.08448559794622235 0.10164720877441645 7.49036002730553 0.02071837826174935 0.1458646830450368 54543.57454884784 -4.736743596311328 0.4201668191420793 TGSS(ph)PTQGIVNK ddPTM_BT-474_Trastuzumab_2h_R1 6 TGSSPTQGIVNK 12 0 E9PFH7;A0A087WYG2;A0A669KB35;Q9UPT6 E9PFH7 MAPK8IP3 C-Jun-amino-terminal kinase-interacting protein 3 1 TGS(0.078)S(0.922)PTQGIVNK;TGS(0.002)S(0.998)PTQGIVNK;TGS(0.026)S(0.974)PTQGIVNK;TGS(0.007)S(0.993)PTQGIVNK;TGS(0.032)S(0.968)PTQGIVNK;TGS(0.086)S(0.914)PTQGIVNK 273.81 9.3274e-28 2484990000.0 6292850.0 5307510.0 5107700.0 4638920.0 4691490.0 6484880.0 6460360.0 5515580.0 7367440.0 5933920.0 True False 6258969.994801361 5484167.2618924575 5826819.763075727 5226206.79636082 5288923.44286018 6036595.509365515 6147847.705828181 5927180.587147737 5551833.130638131 5555212.145315501 1.126684243747435 0.9872111304546752 1.0488923934235819 0.940775376286553 0.9520650705158268 1.0866543619681466 1.1066809952545964 1.0669584584894571 0.9993917397591703 1.0 22.405410576375182 2.7156688465309986 24.834936901845246 1.0614707941491361 1.007986853388411 0.09672996321277372 0.05846311049391915 1355.9183654620235 1471013.6639160686 0.019047472674021047 0.01796877002571917 519.5996460143941 -2.7156688465309986 -0.053483940760725046 TGSSS(ph)PPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;P49023-4 F5GZ78;P49023-3;P49023-4 PXN Paxillin 1 T(0.033)GS(0.033)S(0.158)S(0.774)PPGGPPKPGS(0.001)QLDSMLGSLQSDLNK;TGS(0.001)S(0.126)S(0.874)PPGGPPKPGSQLDSMLGSLQSDLNK 238.65 9.6807e-46 5614400000.0 1245680.0 842950.0 832170.0 738230.0 789000.0 1201830.0 1222670.0 1092770.0 1788360.0 1150030.0 True False 1238973.397288059 871007.0811759649 949332.3026486929 831689.8423075737 889474.4732306114 1118750.3209035113 1163524.7810470215 1174318.046373626 1347642.6407962642 1076634.100809781 1.1507840930880562 0.8090093751636181 0.8817594593508238 0.77249071126581 0.826162270507316 1.0391184154970132 1.080705859281149 1.090730867144532 1.2517183319594338 1.0 20.038096595772263 2.557433175654186 3.5023356661555374 1.10717835001254 0.8774874915599369 0.4564672799172109 0.11274355798115149 0.2119065998383057 4.976572920904755 0.03836619355314237 0.034940343387432814 360.9384721646426 -2.557433175654186 -0.22969085845260317 TGST(ph)SSKEDDYESDAATIVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSTSSKEDDYESDAATIVQK 21 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 T(0.001)GS(0.087)T(0.885)S(0.027)S(0.001)KEDDYESDAATIVQK 327.17 8.860099999999997e-80 559630000.0 612870.0 386100.0 343500.0 315170.0 294610.0 421900.0 414270.0 346240.0 615110.0 334790.0 True False 609570.3760162577 398951.10509762174 391861.814244477 355070.4896848921 332126.83720972174 392735.0460457734 394230.17743491667 372078.1869710957 463524.3825517169 313423.41557186074 1.9448782245706122 1.2728822585565611 1.2502633650695831 1.1328779920193381 1.0596746149413738 1.2530494740771156 1.2578197985482957 1.1871422761832124 1.4789079549337036 1.0 18.257753440678314 4.751167008261922 3.4891487587043413 1.2069258398996021 2.0458249342914745 0.76423355524793 0.12291912308738649 0.14221849925963825 2.947972964493811 0.02855872905371986 0.3201112356448291 56385.444478089106 -4.751167008261922 0.8388990943918724 TGSTS(ph)SKEDDYESDAATIVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSTSSKEDDYESDAATIVQK 21 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 T(0.008)GS(0.313)T(0.229)S(0.427)S(0.023)KEDDYESDAATIVQK 299.05 3.1675999999999993e-55 448120000.0 776530.0 461170.0 377010.0 370380.0 334640.0 566830.0 456690.0 413960.0 811120.0 360650.0 True False 772349.2487605931 476519.76466684794 430089.73097033513 417270.070024083 377254.4204333232 527646.3762742961 434598.1599747804 444851.7972462876 611230.3444511535 337633.00823200075 2.2875407022700873 1.4113542013031282 1.2738379260442563 1.2358687090729013 1.117350529229349 1.562780780935168 1.2871909717907413 1.3175601508150312 1.8103394204607905 1.0 18.365096428495974 4.737772030737308 4.185282081050896 1.3320426712961746 2.3637594745152515 0.6446738131707745 0.2129119548493307 0.12818723492675532 5.066962860673944 0.048485539110873 0.3969740493988178 54672.88993754503 -4.737772030737308 1.0317168032190769 TGSVQTS(ph)PSSTPVAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TGSVQTSPSSTPVAGR 16 0 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 TGSVQT(0.263)S(0.734)PS(0.003)STPVAGR;TGSVQT(0.028)S(0.877)PS(0.009)S(0.086)TPVAGR 280.87 1.8286999999999998e-35 1187820000.0 1160560.0 1302230.0 1212910.0 1194820.0 1336620.0 1447410.0 1468660.0 1250460.0 1485430.0 1312840.0 True False 1154311.6739103375 1345573.9383353405 1383677.1851972868 1346084.0894923462 1506830.6342325746 1347353.953536649 1397615.3049739655 1343775.6749072191 1119365.6802422276 1229053.4272211292 0.9391875473796273 1.0948050821335427 1.1258071899492275 1.0952201586027237 1.2260090577506426 1.096253363519758 1.1371477219944393 1.0933419533644482 0.9107542889922174 1.0 20.229116200666663 1.2911682483868703 7.529045837965721 0.9559101220855236 1.1069292770376638 0.41166196868390537 0.06936628056191178 0.18299965922965225 21.953590866376256 0.046934437349803536 0.016835235244547487 19.550967257273417 -1.2911682483868703 0.15101915495214013 TGSVQTSPSS(ph)TPVAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGSVQTSPSSTPVAGR 16 0 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 TGSVQT(0.037)S(0.248)PS(0.248)S(0.417)T(0.049)PVAGR 118.31 0.00029611 168650000.0 160470.0 189390.0 174230.0 172970.0 175500.0 206590.0 203060.0 179890.0 216560.0 208480.0 True False 159606.0473498929 195693.73166132713 198760.06956569196 194867.9842649862 197848.88473000276 192308.91956055054 193237.2120354702 193314.3052629112 163191.6897553281 195174.62791129202 0.8177602235390696 1.0026596886879735 1.0183704290499764 0.9984288754661022 1.0137018671296056 0.9853172085869483 0.9900734234948695 0.9904684196491649 0.8361316811604204 1.0 17.57440599370202 4.742323633784079 24.801637791638214 0.9847810116740481 0.81776015199524 0.4922170754581855 0.049859264440208474 270.72463803826565 1784234.514182361 0.011534168400780658 0.0862506193944318 55248.89975828799 -4.742323633784079 -0.1670208596788081 TGTGDIATCYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 TGTGDIATCYSPR 13 0 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 TGTGDIATCYS(1)PR;TGTGDIATCYS(1)PR;TGTGDIATCYS(1)PR 185.66 8.885e-06 845090000.0 1010220.0 937370.0 900380.0 878770.0 913600.0 1222610.0 1078170.0 988070.0 1386310.0 1038030.0 True False 1004781.0877659946 968569.793797869 1027145.6777567447 990022.1918976809 1029941.5446685521 1138093.8484143708 1026014.7980906288 1061804.8007177974 1044672.4761022764 971782.0366978064 1.0339572556623104 0.996694482117767 1.0569712538081772 1.0187698007485875 1.0598483052520464 1.1711410639794344 1.055807536407145 1.092636785431737 1.0750069837184453 1.0 19.89027323905242 3.0056784535051033 13.434633561330092 1.086501804345459 1.0282074726075443 0.2468314277432656 0.04207235624760989 0.6526796656170779 1524.9646585779894 0.011578825106262427 0.013630256808860179 1013.1609755771362 -3.0056784535051033 -0.05829433173791476 TGTGT(ph)PVKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGTGTPVKR 9 1 Q9H582;Q9H582-2;A0A087WZL9 Q9H582 ZNF644 Zinc finger protein 644 1 T(0.074)GT(0.42)GT(0.507)PVKR 57.83600000000001 0.066086 149530000.0 95613.0 80303.0 60422.0 69302.0 64365.0 97739.0 103790.0 90022.0 152080.0 102930.0 True False 95098.23023160303 82975.8368108115 68928.89240256128 78075.6260943058 72561.50122875583 90982.53298285813 98769.28118369658 96739.89876245367 114601.9217675948 96360.91927719359 0.986896253636204 0.8610942842099885 0.7153199961104476 0.8102416070742541 0.7530179430939641 0.9441849835526798 1.024993139589869 1.0039329168723463 1.1892987595721125 1.0 16.556160536412698 2.4245941474683765 2.6133328830642046 1.0519171710983541 0.8205914745736005 0.6212339241787573 0.08405926783401825 0.19029712975229368 2.655602813982177 0.03331102282484462 0.02723291032902702 265.82397471073654 -2.4245941474683765 -0.23132569652475365 TGTITTFEHAHNMR ddPTM_BT-474_Trastuzumab_2h_R1 11 TGTITTFEHAHNMR 14 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;;;;;;; 180.09 1.0366e-06 11714707000.0 4263187.0 4883197.0 4713499.0 5014872.0 4876442.0 5179466.0 5261758.0 1633301.0 6410154.0 4260554.0 False True 4240234.474876607 5045731.260190083 5377118.688732249 5649754.281013594 5497427.983763792 4821421.706571505 5007226.663672467 1755186.2143544282 4830457.438362928 3988641.7960762074 1.0630772808548268 1.2650249177937658 1.3481076927043045 1.4164606825740762 1.3782706657619241 1.2087878413435216 1.2553713568860165 0.4400460868862874 1.2110532069124005 1.0 21.927466135910766 1.894511830721833 10.761084273950969 0.826365866690974 1.287902489961566 0.4320344823194725 0.20323282703302586 0.3822654089052515 36.9479842380767 0.08156807186680601 0.05200376905949576 78.43534853554026 -1.894511830721833 0.4615366232705921 TGTIVVEGHELHDEDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 TGTIVVEGHELHDEDIR 17 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;; 178.12 5.7232e-10 2102710000.0 1456320.0 1468240.0 1345270.0 1513040.0 1591990.0 1589110.0 1478240.0 463546.0 1895680.0 1265580.0 False True 1448479.3349323617 1517109.4808301772 1534672.3227035427 1704590.7088645156 1794720.4900359989 1479258.5660625722 1406731.8837748116 498138.15635889355 1428515.064810585 1184809.600882449 1.2225418614548118 1.2804669034587757 1.2952902487965283 1.438704334936966 1.5147754446784418 1.2485200701959345 1.1873062834121824 0.42043730569694837 1.205691668726033 1.0 20.176223805719697 1.9579521051732767 9.758710195639498 0.8086127109126893 1.3321046137632446 0.4960016945415008 0.20315898408774555 0.3849945802046819 87.28904802375602 0.0824154584667687 0.05275848522240461 90.7720419512808 -1.9579521051732767 0.5234919028505554 TGTLQDLIQHGS(ph)PINNECHPSLER ddPTM_BT-474_Trastuzumab_2h_R1 2 TGTLQDLIQHGSPINNECHPSLER 24 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER 255.39 1.3004999999999999e-43 589340000.0 190469.0 277200.0 289580.0 317480.0 276990.0 377850.0 329040.0 278070.0 379490.0 342490.0 True False 189443.53606709527 286426.43442906125 330350.346925518 357672.935448042 312263.03465164435 351730.11886322714 313123.07814513496 298820.9954108494 285969.7744054739 320631.99497955886 0.5908441422983155 0.893318317928071 1.0303099880801936 1.115524779337273 0.9738985489316248 1.0969900832437227 0.9765808872726423 0.9319749747055032 0.8918940682251789 1.0 18.290558869658614 4.696344764190538 2.6611083024920665 1.0005079591515231 0.5299191007837794 0.7858263316126676 0.06464794436706811 0.19269174051460147 1.9223351631448828 0.01732071926125399 0.19208704908138988 49698.669722805695 -4.696344764190538 -0.4705888583677438 TGTLQPWNS(ph)DSTLNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TGTLQPWNSDSTLNSR 16 0 Q9H0H5;F8VRD2;H0YIK5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 TGTLQPWNS(0.997)DS(0.002)T(0.001)LNSR 104.26 0.0014427 66127000.0 87960.0 106600.0 90730.0 91738.0 90938.0 116840.0 110040.0 102890.0 127630.0 120300.0 True False 87486.43313327472 110148.11655893916 103503.99536070279 103352.02139389106 102518.41526824517 108763.12581177565 104716.94480637803 110568.1742648335 96177.29665437994 112622.35100598843 0.7768123498738082 0.978030697948068 0.9190360033879883 0.9176865912557229 0.9102848089434218 0.9657330435766913 0.9298060631038501 0.9817604878356189 0.8539805446723976 1.0 16.781133647197326 4.747141035660022 24.732213393300515 0.9391413379458516 0.776812254447565 0.5870093066777874 0.040959016625945865 624.2231323779513 1799215.1617542394 0.00903980451064526 0.10452359844022234 55865.15854898559 -4.747141035660022 -0.16232908349828667 TGTLVEEAFWIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGTLVEEAFWIDK 13 0 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 89.805 0.01694 30886000.0 17093.0 15996.0 12123.0 18471.0 14435.0 14004.0 17581.0 16995.0 18158.0 17009.0 False True 17000.973187210824 16528.4171902138 13829.813024995032 20809.4267061257 16273.211687051811 13035.936441870135 16730.539864057926 18263.25319886138 13683.204204734246 15923.471057862467 1.0676675409169865 1.0379908457240943 0.868517484331178 1.3068398611401197 1.021963843681975 0.81866173490066 1.0506842260247622 1.1469392026711167 0.8593103950145308 1.0 13.95886723378082 3.009414319343213 24.999157765663576 0.9955393021266191 1.0673974105298696 0.09402151869136122 0.13174881801618785 681.29068458572 1809111.3309866863 0.039430588756120155 0.04706947084211053 1021.9139303744895 -3.009414319343213 0.07185810840325046 TGVELGKPTHFTVNAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TGVELGKPTHFTVNAK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 199.58 2.2696e-11 5179200000.0 5418800.0 5155800.0 5183300.0 4849000.0 5083900.0 6915200.0 6853900.0 6221000.0 9640500.0 7485500.0 False True 5389625.782885275 5327407.686253084 5913063.58594875 5462882.902820828 5731304.530363893 6437168.50062985 6522350.6725593945 6685242.60959792 7264727.951081653 7007768.981341027 0.7690929591480198 0.7602145134118871 0.8437868887648762 0.7795466599093618 0.8178500954617848 0.9185760143876796 0.9307314053767878 0.9539758841077853 1.0366677284061174 1.0 22.740523785049902 2.412976235780715 0.7656389496428265 1.0133538614180782 0.7754196276294514 0.9114934970635563 0.028283185035534647 0.18154189970106083 0.21165216353384286 0.022034568669034887 0.015592549239003115 258.8071294250537 -2.412976235780715 -0.23793423378862677 TGVHHYSGNNIELGTACGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TGVHHYSGNNIELGTACGK 19 0 E5RI99;P62888;A0A0B4J213 E5RI99 RPL30 60S ribosomal protein L30 0 181.41 1.8212999999999998e-14 140010000.0 54309.0 90713.0 89293.0 97010.0 108020.0 122610.0 126420.0 82318.0 106060.0 131190.0 False True 54016.60637829717 93732.32736783361 101864.67825133052 109291.45605334066 121775.70671529867 114134.25929289474 120304.58162870146 88460.98716233429 79922.93413118809 122817.3418825903 0.43981253420983024 0.7631847907719653 0.829399795581882 0.8898699025567579 0.9915188266467498 0.9293008425634522 0.9795406722261505 0.7202646288086934 0.6507463270748198 1.0 16.90615475893625 4.842267383565635 1.7249458556151676 0.870448674562613 0.2085233496217208 0.5906778485792099 0.10905420770502583 0.9440457089537245 2.2621337703131643 0.030539790318591675 1.114090464208008 69545.23573348924 -4.842267383565635 -0.6619253249408922 TGVIHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TGVIHEK 7 0 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5 Q96M27 PRRC1 Protein PRRC1 0 ;; 96.492 0.012692 1499610000.0 3600890.0 3373870.0 3085600.0 2807770.0 3080390.0 3528520.0 3575370.0 3446810.0 4371840.0 3464280.0 False True 3581503.2083364883 3486167.2234025174 3520025.6594840107 3163233.394112856 3472659.4075980256 3284601.717642647 3402415.6938602375 3704028.4647465395 3294458.611654662 3243186.684480678 1.1043160806853103 1.0749203060325057 1.085360172551295 0.9753473055527717 1.0707553235265248 1.0127698579178772 1.0490964674162926 1.1420953602427777 1.0158091199064583 1.0 21.6289806399951 1.4148355544912103 0.004938687678427354 6.870539320238608e-08 2.103049679470265 0.11192529434471377 0.046425862021439224 14293.170361670416 69.38877834861371 14795.07369891827 14747.155773732862 25.99175199702392 -1.4148355544912103 2.1030496107648715 TGYGGGFNER ddPTM_BT-474_Trastuzumab_2h_R1 3 TGYGGGFNER 10 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 ;; 105.35 0.0059591 741610000.0 441760.0 489170.0 441350.0 455890.0 443970.0 479030.0 511960.0 446610.0 566210.0 512410.0 False True 439381.6132441501 505451.7277404902 503488.2437170305 513605.6272565453 500506.9478836429 445915.78361532785 487194.53892287717 479938.30603962834 426675.13232528756 479707.55510372826 0.9159364045228382 1.0536663897886605 1.0495733043190452 1.0706640364367144 1.0433584848906896 0.9295575582896677 1.0156073919192914 1.0004810241853501 0.889448431207273 1.0 18.87179563572908 2.7610664176625375 24.774282299052295 0.97388315531056 1.0318610924382572 0.23261221344855043 0.05300001565836218 1102.616010484662 1213753.147791368 0.016120192522457277 0.01708549320079418 576.8546763705411 -2.7610664176625375 0.057977937127697166 THAPSALS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 THAPSALSPPR 11 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 THAPSALS(1)PPR 135.14 8.1343e-05 346490000.0 140610.0 179280.0 164660.0 153570.0 137990.0 181070.0 174490.0 66428.0 195130.0 127140.0 True False 139852.97138323978 185247.22642295138 187842.69674962293 173011.94625411334 155562.20856919137 168553.05709293217 166049.25208346872 71385.19467454925 147042.82610804008 119025.81634996977 1.174980148609376 1.5563617381818398 1.578167682524537 1.4535665585809467 1.3069619124627065 1.4161050288228079 1.3950692141882621 0.5997454742478426 1.2353859911844027 1.0 16.860914998227212 1.7660635214048577 24.99999999999857 0.9102604605352967 1.421338710438819 0.5795342792914182 0.1812557813408341 11.479718987330418 10441.358434343836 0.07958926983680333 0.044140848905256866 58.35304472028183 -1.7660635214048577 0.5110782499035224 THAVSVSETDDYAEIIDEEDTYTMPSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 THAVSVSETDDYAEIIDEEDTYTMPSTR 28 0 E7ESA6;Q05397;Q05397-7;H0YBP1;Q05397-5;Q05397-2;Q05397-4;Q05397-3;H0YB99;H0YB33 E7ESA6 PTK2 Focal adhesion kinase 1 0 125.11 3.8834e-05 48400000.0 17921.0 25395.0 24369.0 20563.0 25955.0 31009.0 23798.0 15912.0 30200.0 19156.0 False True 17824.515327210276 26240.257223398316 27799.943380854886 23166.27369162812 29260.215402662267 28865.4208173344 22646.799822811583 17099.43423949881 22757.61465926723 17933.44767972328 0.9939257439808316 1.4632020396762446 1.5501728322037769 1.2917914115210214 1.6316001209151638 1.609585693328312 1.2628246518608648 0.9534939708683312 1.2690038784342883 1.0 14.130365250482523 1.994712009372843 7.367706203083469 1.077793483126921 1.4349987981796413 0.40716663208983606 0.18877539377895836 0.12368266252509855 45.40304597974825 0.07477902252282151 0.05116106855123736 98.78977797384648 -1.994712009372843 0.35720531505272035 THCVGDSQSSASS(ph)PPATSK ddPTM_BT-474_Trastuzumab_2h_R1 1 THCVGDSQSSASSPPATSK 19 0 Q9H4Z2-2;Q9H4Z2 Q9H4Z2-2 ZNF335 Zinc finger protein 335 1 THCVGDSQSS(0.001)AS(0.114)S(0.883)PPAT(0.001)S(0.001)K 80.541 0.0046058 209060000.0 44441.0 59500.0 53591.0 78152.0 64900.0 56158.0 52505.0 21931.0 46929.0 34609.0 True False 44201.734593859284 61480.42153149043 61136.146978677614 88046.03518689494 73164.63030756231 52275.929641712595 49965.13256142206 23567.602583361502 35363.97676638249 32400.22398974439 1.3642416363495022 1.8975307562981898 1.8869050719534832 2.7174514353593375 2.2581519908850334 1.6134434644112166 1.5421230599281497 0.7273901128221005 1.0914732187523213 1.0 14.983716166356153 2.1202433387822155 1.9397052341197174 0.9225946296897063 2.030817076349431 0.6311408559579872 0.3484068810441631 0.2177600381527193 1.5898566453337863 0.1986149456322533 0.11438532985473408 131.89955756548355 -2.1202433387822155 1.1082224466597248 THEAQIQEMR ddPTM_BT-474_Trastuzumab_2h_R1 6 THEAQIQEMR 10 0 P35579 P35579 MYH9 Myosin-9 0 ;;;;; 163.83 6.3441e-06 3739530000.0 1522710.0 1765961.0 1533988.0 1626741.0 1527693.0 1589607.0 1583804.0 718968.0 1603577.0 1280665.0 False True 1514511.8985489851 1824739.944339033 1749960.1767372827 1832686.243806487 1722235.648204172 1479721.2096223845 1507189.3498011716 772621.0430055296 1208396.9351809178 1198931.8632675316 1.2632176564407769 1.5219713482015096 1.4595993570210033 1.5285991639355891 1.4364749999307254 1.2341995862797392 1.257110096059608 0.6444244803869439 1.0078945870097993 1.0 20.193318240320473 2.0642171753308185 2.2200300559523756 0.8558992531627487 1.4341281642906056 0.7333845036475541 0.1382093501606474 0.13739623897613223 1.298213236306139 0.07003459088966751 0.0399344316612442 115.93569646909219 -2.0642171753308185 0.5782289111278569 THEDIEAQIR ddPTM_BT-474_Trastuzumab_2h_R1 3 THEDIEAQIR 10 0 O75533;B4DGZ4;A0A494C1M2;O75533-2;F8WC19 O75533 SF3B1 Splicing factor 3B subunit 1 0 ;; 164.65 6.0925e-06 2325170000.0 821950.0 930180.0 844040.0 926220.0 883990.0 921910.0 905770.0 396380.0 938720.0 738700.0 False True 817524.7125272293 961140.4789943153 962873.4954728044 1043479.3570325233 996560.88668077 858180.5316427079 861954.4447225847 425959.8883768562 707385.0342035536 691555.5335671119 1.1821533815373524 1.3898240016049868 1.3923299702428922 1.5088872930423294 1.441042459078319 1.2409423249296085 1.2463994616260798 0.6159445882526786 1.0228897028049093 1.0 19.39948558233457 1.9120027916454165 5.539504758437027 0.8499947121721679 1.3633126422059187 0.7128005523399539 0.13589411307851368 0.10970814663117125 5.277830384719708 0.060575633420507036 0.03647956298601211 81.65876203678611 -1.9120027916454165 0.5133179300337508 THETLSHAGQK ddPTM_BT-474_Trastuzumab_2h_R1 4 THETLSHAGQK 11 0 Q16890-5;E9PPQ1;J3KNE7;Q16890;E9PNK6;E9PNQ9;Q16890-4;Q16890-3;Q16890-2 Q16890-5 TPD52L1 Tumor protein D53 0 ;;; 268.58 1.2295e-21 735220000.0 896910.0 1006190.0 883990.0 952130.0 994800.0 1205640.0 1116180.0 132061.0 1276730.0 660100.0 False True 892081.1362160697 1039680.4258953003 1008448.1082211777 1072669.5603759123 1121481.8833584432 1122296.9445712871 1062186.1091783266 141916.06241217014 962096.9988055056 617971.852859958 1.4435627320039592 1.6824074123824344 1.6318673796453764 1.7357903202413265 1.81477825918487 1.8160971885326582 1.718826034329163 0.22964810088903925 1.5568621683219797 1.0 19.23718160275395 1.7701775537732294 24.999999999997335 0.8563631955011904 1.7004207166821115 0.5460151002977336 0.31672555623851356 17.32738648982733 13708.03940801597 0.13624794286642347 0.07557730121840801 58.908444309786425 -1.7701775537732294 0.844057521180921 THFGGGK ddPTM_BT-474_Trastuzumab_2h_R1 6 THFGGGK 7 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4;A0A2R8Y8A0 E7ETK0 RPS24 40S ribosomal protein S24 0 ;;;;; 117.93 0.0051196 5864370000.0 24185680.0 21543480.0 20487010.0 20529270.0 19768600.0 19477620.0 23888640.0 8682430.0 29478000.0 18426360.0 False True 24055466.986161664 22260541.70849135 23371402.93171682 23128273.477086518 22286014.03232787 18131177.974785686 22733055.219733153 9330357.015086213 22213541.884962875 17250373.929199524 1.3944895968569835 1.2904382130993213 1.3548345692470058 1.3407404136288046 1.291914837544743 1.0510599972615802 1.317829706940622 0.5408785370903072 1.287713644709014 1.0 24.040124299143205 2.387737293218831 1.364217896175535 0.9262530785126535 1.3395811746700197 0.3409795203330692 0.20127819560643875 0.4003817310895136 1.4946223822940474 0.10656993242000809 0.07203502152384056 244.19529569715473 -2.387737293218831 0.4133280961573662 THHNDTELIR ddPTM_BT-474_Trastuzumab_2h_R1 1 THHNDTELIR 10 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 142.08 3.6373e-05 234670000.0 36084.0 56785.0 48387.0 46031.0 47393.0 39955.0 37502.0 21722.0 53866.0 31378.0 False True 35889.7277533093 58675.05439774262 55199.469012656424 51858.519880335254 53428.21762968108 37193.00489395323 35687.88498844775 23343.005942081 40591.44606742015 29375.429175942638 1.2217601158556561 1.997419477561038 1.8791034058444565 1.765370628961071 1.8188063673785153 1.2661263490377492 1.2148889731856165 0.7946439114904247 1.381816273195525 1.0 14.84232230920091 2.5518160307668505 2.388373555598214 1.0515422242305597 1.7639997032392867 0.6155112589421113 0.23971466979007183 0.17866506004802216 2.025617264151002 0.08724825001335236 0.07700334772148752 356.30017098669884 -2.5518160307668505 0.712457479008727 THILLFLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 THILLFLPK 9 0 P07237;H7BZ94;I3L398;I3L312;I3L4M2 P07237 P4HB Protein disulfide-isomerase 0 ; 102.61 0.0045485 531990000.0 1238000.0 1435820.0 1549730.0 1093340.0 729530.0 1108680.0 1398570.0 302870.0 2287600.0 775250.0 False True 1231334.7455547312 1483610.4007284807 1767918.5135053669 1231756.7318973248 822431.3212369188 1032039.5611519982 1330915.8260437672 325471.69734269765 1723851.6322695287 725772.8812750821 1.6965841206293726 2.0441799893680006 2.4359115077424494 1.6971655509273085 1.1331800105179202 1.421986943544719 1.8337910665737922 0.44844841373914257 2.3751943297205607 1.0 19.46915862552123 3.4683320695153457 5.550278924439822 1.3194749541635649 2.061818815073733 0.2696249095107841 0.5059848586642739 0.1959404167899357 20.302043249610705 0.13568968861917027 0.19345677047137794 2939.896691645411 -3.4683320695153457 0.7423438609101682 THINIVVIGHVDSGK ddPTM_BT-474_Trastuzumab_2h_R1 11 THINIVVIGHVDSGK 15 0 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5;P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;;;;;; 191.44 1.013e-07 10598602000.0 11405699.0 10803069.0 9547298.0 10451846.0 10098405.0 11950771.0 11977024.0 2863092.0 14243291.0 7919139.0 False True 11344291.983876286 11162642.62107188 10891474.571798144 11775048.631948087 11384377.018814163 11124642.329858944 11397649.592445152 3076750.4635265917 10733222.783371158 7413732.769104008 1.5301727668351484 1.5056710254773522 1.4690945723303217 1.5882752991879379 1.5355796295028896 1.5005453630888588 1.5373698981899806 0.4150069282708223 1.4477488085490207 1.0 22.82176868291169 1.7723783851896286 24.999999999573106 0.8979646905045705 1.5230499394848713 0.5478888748183348 0.2354376442622307 20.825088433374702 15402.322289388214 0.09993456447515255 0.055444226003738 59.20772651812958 -1.7723783851896286 0.6250852489803008 THKHS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 2 THKHSPEK 8 1 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 T(0.004)HKHS(0.996)PEK;THKHS(1)PEK 89.40299999999998 0.0084125 70691000.0 199969.0 116048.0 87071.0 89412.0 94865.0 89557.0 131226.0 21057.7 207483.0 74695.0 True False 198892.38912264467 119910.58752750258 99329.83996530077 100731.5500323811 106945.49544109257 83366.1353845018 124878.09704799872 22629.132502833978 156351.59477975985 69927.90115039311 2.8442493747222466 1.7147745828894863 1.4204607650338776 1.4405058406620692 1.529368015938104 1.1921727095055696 1.7858121721603637 0.32360663098075504 2.235897148457185 1.0 16.093580583645423 7.438916175964275 0.8606815492902314 1.2714411900555902 199.9999901563591 0.4630410790727455 0.47444287018610504 197.3311143056686 1.5386642170153282 0.1457137526853651 75498.36068979565 27473638.278057676 -7.438916175964275 198.72854896630352 THKHS(ph)PEKR ddPTM_BT-474_Trastuzumab_2h_R1 6 THKHSPEKR 9 2 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 THKHS(1)PEKR;THKHS(1)PEKR;T(0.028)HKHS(0.972)PEKR;T(0.005)HKHS(0.995)PEKR;T(0.11)HKHS(0.89)PEKR;THKHS(1)PEKR 152.74 3.787e-05 2315340000.0 1225122.0 876750.0 682057.0 771990.0 767378.0 798874.0 1004048.0 264942.9 1471415.0 623240.0 True False 1218526.0792758514 905932.0937434324 778084.6970542796 869723.8548460824 865099.0396942463 743649.7207271178 955478.3624041647 284714.2845507859 1108804.4892008496 583464.2896173911 2.088433004314462 1.5526778756888462 1.333560101106636 1.4906205406613782 1.4826940655811827 1.2745419624820038 1.6375952725928151 0.48797208264020475 1.900381066899488 1.0 19.154284834279533 7.999999999999999 0.3793275163001964 1.1694353236764026 12.807864562114295 0.27924779598418514 0.3626715924204927 82.49066693052673 1.1297412755197844 0.2661582441036559 705.0951271909854 99999999.99999979 -7.999999999999999 11.638429238437892 THLASDDLYK ddPTM_BT-474_Trastuzumab_2h_R1 1 THLASDDLYK 10 0 Q9H7B2;Q5VXN0 Q9H7B2 RPF2 Ribosome production factor 2 homolog 0 131.82 0.00024004 164080000.0 120040.0 126610.0 113780.0 119190.0 97357.0 127140.0 115350.0 42497.0 161370.0 90895.0 False True 119393.71797769776 130824.13731263879 129799.23500651098 134279.44177917403 109754.83686985134 118351.11105536773 109770.07982020818 45668.34193539345 121602.52574721695 85094.00328087545 1.4030802803295899 1.5374072469104414 1.5253628928242333 1.578012980961172 1.2898069504096104 1.3908278667383684 1.289986081132918 0.5366810841494072 1.4290375474031394 1.0 16.376769845869898 1.9665644161554143 10.384406029048115 0.9308299560811297 1.4495153569672163 0.4741754006590525 0.21666798913888902 0.4969461771600779 152.0727322523793 0.0865200865979992 0.05590236354856505 92.59007079360406 -1.9665644161554143 0.5186854008860866 THLEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 THLEMK 6 0 Q9BQI0-3;Q9BQI0;Q9BQI0-2;A6PVM9;Q5JUP3;Q9BQI0-4;Q5JUP1 Q9BQI0-3 AIF1L Allograft inflammatory factor 1-like 0 ; 111.69 0.027635000000000003 315850000.0 1205180.0 1114120.0 979580.0 959110.0 951860.0 1256850.0 1243870.0 365930.0 1706290.0 923870.0 False True 1198691.444788087 1151202.8107002387 1117496.3493380058 1080533.2276602348 1073073.728883763 1169966.9178066598 1183699.2560551588 393237.5547548893 1285797.6926146054 864907.8256350989 1.385918139783152 1.3310121339865486 1.292040973866125 1.249304487292392 1.2406798702460677 1.3527070551680547 1.3685842825921624 0.4546583382641223 1.4866297361461016 1.0 19.722186865469656 THLENNR ddPTM_BT-474_Trastuzumab_2h_R1 4 THLENNR 7 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ;;; 165.52 0.0011576 243552000.0 321673.0 373437.0 300241.0 358060.0 301540.0 315155.0 341335.0 106596.0 394859.0 244472.0 False True 319941.14830923005 385866.62479756604 342512.32305844524 403390.359287281 339939.33163239405 293369.0766450713 324823.3220236738 114550.73480352024 297551.29028952296 228869.5876569905 1.397919013987693 1.6859672302808042 1.4965392587317998 1.7625336918588186 1.4852970860500043 1.2818176484188322 1.4192506979585695 0.5005065809582301 1.3000909965174863 1.0 17.804166243789865 1.9029191565714432 7.313292600764472 0.8913914726649583 1.5196525337414615 0.5826785951267749 0.22175124103554675 0.16844216796768977 11.110231549934168 0.09290835065214775 0.057714309604236576 79.96853806183327 -1.9029191565714432 0.6282610610765031 THLMSESEWR ddPTM_BT-474_Trastuzumab_2h_R1 3 THLMSESEWR 10 0 P61024;Q5T179;Q9BZU3 P61024 CKS1B Cyclin-dependent kinases regulatory subunit 1;Cyclin-dependent kinases regulatory subunit 0 ;; 157.78 8.5683e-06 423819000.0 264836.0 309194.0 312684.0 280408.0 218214.0 293878.0 339117.0 107296.0 381735.0 234591.0 False True 263410.15240204585 319485.3353782798 356707.1893019507 315907.62404912 246002.25944428967 273562.90557440073 322712.61515725637 115302.97235804836 287661.52423693263 219619.2015365401 1.199394909730695 1.4547240548323552 1.6242076594682546 1.4384335333108818 1.1201309253615512 1.2456238054798934 1.4694189437874068 0.5250131662047061 1.3098195523175677 1.0 17.74464467063103 1.7622773165354482 24.999999999993214 0.9026829663632986 1.3668819991439785 0.416212152713766 0.22606927113805483 11.300461339596763 11920.656230396224 0.1026053157569959 0.05690284161825077 57.84653055818065 -1.7622773165354482 0.46419903278067987 THLPGFVEQAEALK ddPTM_BT-474_Trastuzumab_2h_R1 3 THLPGFVEQAEALK 14 0 P30044-2;P30044 P30044-2 PRDX5 Peroxiredoxin-5, mitochondrial 0 ;; 195.1 6.7091e-08 6088000000.0 4238200.0 4101300.0 3772000.0 3525900.0 3594000.0 5115400.0 4464900.0 1068980.0 5648200.0 2976650.0 False True 4215382.002108286 4237809.291211798 4303064.813188254 3972278.5784813277 4051674.596693052 4761784.438356358 4248915.729425639 1148752.7157704525 4256276.792002425 2786677.6485617207 1.5126909293882478 1.520738967924419 1.5441559289820197 1.4254532025013829 1.4539444843160205 1.7087675859509774 1.524724516170221 0.4122302112565315 1.5273660353931513 1.0 21.410114696373643 1.7810950563663348 24.999999999702794 0.9199730788023063 1.527865115375287 0.4753987682267192 0.2612217045679701 49.52589623454668 29119.645313372515 0.1121714612399943 0.06241343405568813 60.40808333249404 -1.7810950563663348 0.6078920365729806 THMQDLK ddPTM_BT-474_Trastuzumab_2h_R1 8 THMQDLK 7 0 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;J3QRT6;O43236-5;J3KSZ7;O43236-2;O43236-3;O43236;O43236-4;A0A5F9ZHH3 E7EPK1;A0A5F9ZHH3 SEPT7;SEPT4 Septin-7;Septin-4 0 ;;;;;;; 136.8 0.0029452 2320213000.0 5268857.0 4835453.0 4830955.0 4208644.0 3599133.0 5024056.0 5155403.0 1536636.0 7515991.0 3671449.0 False True 5240490.0593370395 4996398.130011936 5511111.472586393 4741457.898878006 4057461.2538173795 4676754.834075714 4906016.461338019 1651307.581199501 5663775.727169551 3437133.981534366 1.5246685428880604 1.453652419968075 1.6034031557088695 1.379480091364195 1.180478059806704 1.3606553771837462 1.4273567709885815 0.4804315426954474 1.6478193045710696 1.0 21.71277465924439 2.719658580383818 0.7943437141120598 1.0209103294179773 1.523590770170941 0.20345278425973512 0.2945199295962087 0.8429529368176846 1.1395569122979892 0.19805444119918422 0.18612168471380006 524.395046192578 -2.719658580383818 0.5026804407529637 THNDIIHNENMR ddPTM_BT-474_Trastuzumab_2h_R1 8 THNDIIHNENMR 12 0 P15311;E7EQR4 P15311 EZR Ezrin 0 ;;;;;;; 237.32 2.4401999999999997e-16 6375590000.0 1159088.0 1522705.0 1523096.0 1616805.0 1421739.0 1362779.0 1301427.0 387871.0 1262880.0 849455.0 False True 1152847.5989947822 1573387.3154303879 1737534.6778122413 1821492.3472252474 1602789.0343427344 1268573.2953667042 1238472.004076065 416815.9035890302 951660.145725012 795242.0546449854 1.4496813797271326 1.9785011447021432 2.1849129678987076 2.290487954687462 2.0154731820090386 1.5952039859524594 1.5573522512324225 0.5241371493803941 1.1966924286340155 1.0 19.60103452714119 2.1264083165967547 1.9482982532508466 0.8717294414575877 1.9916340997946154 0.7085473227499625 0.2874511313568848 0.16890318592486323 1.2473669792925124 0.15527019991179586 0.09010197111551739 133.7852752800412 -2.1264083165967547 1.1199046583370276 THNGESVSYLFSHVPL ddPTM_BT-474_Trastuzumab_2h_R1 1 THNGESVSYLFSHVPL 16 0 B1ALA9;P60891;P60891-2;B7ZB02;P11908;P11908-2;H7C540;A0A0B4J207;P21108 B1ALA9;P11908;A0A0B4J207 PRPS1;PRPS2;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 3 0 171.46 4.9142e-09 329280000.0 272820.0 536200.0 451260.0 497770.0 482350.0 417250.0 468490.0 146510.0 395650.0 314260.0 False True 271351.1674331512 554047.0928602553 514793.4855777661 560787.6309624922 543774.4133875611 388406.4896008506 445827.3488944033 157443.32016270555 298147.3589383801 294203.6577484778 0.9223242481408447 1.8832093968523131 1.7497861498985037 1.9061205263529517 1.8482924976155384 1.3201959913527288 1.5153698370247743 0.5351507910119454 1.0134046640347139 1.0 18.166455657748745 1.8532760379082336 5.521120182079627 0.8213042072355659 1.6302351677582234 0.5477770048432186 0.3088167548672208 0.1564635306401871 6.294195205340544 0.13913172503792962 0.08222136393540237 71.3306264085887 -1.8532760379082336 0.8089309605226576 THPVEIFYTPEPER ddPTM_BT-474_Trastuzumab_2h_R1 5 THPVEIFYTPEPER 14 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;;;; 172.57 2.8363e-06 2817420000.0 1587200.0 1632940.0 1473401.0 1440840.0 1457440.0 1668690.0 1555070.0 1164557.0 1666690.0 1506450.0 False True 1578654.6915544982 1687291.4207669252 1680843.0537689244 1623250.1962673448 1643036.3450763281 1553337.3879737428 1479845.3231557114 1251462.1568406252 1255956.58200179 1410307.0712632686 1.1193694789748405 1.1964000288643173 1.191827714699981 1.1509906100189475 1.1650202842736899 1.1014178540439112 1.0493071709767112 0.8873685613159695 0.8905554028576055 1.0 20.427577889363924 2.0914236432964057 1.881023632936973 0.9141022008043427 1.164931015815406 0.8701569178123586 0.039545527525735036 0.10239642315338598 0.6942653849238958 0.021344109809210882 0.011831633781067923 123.43082827161838 -2.0914236432964057 0.25082881501106336 THPVEIFYTPEPERDYLEAAIR ddPTM_BT-474_Trastuzumab_2h_R1 4 THPVEIFYTPEPERDYLEAAIR 22 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;;; 176.1 4.3856999999999997e-13 1187330000.0 102045.0 90132.0 80708.0 87855.0 76507.0 113155.0 115397.0 71326.0 118369.0 102970.0 False True 101495.60105826524 93131.9891340554 92070.98487348824 98977.43399202389 86249.71295748331 105332.86118821875 109814.80625065095 76648.7083060893 89198.54601333775 96398.36644294775 1.0528767737815787 0.9661158437697643 0.955109388995501 1.026754266117181 0.8947217275567547 1.0926830513311527 1.1391770452421883 0.7951245558860476 0.9253118004455902 1.0 16.55672107844632 1.7297845895601194 24.999999989415446 0.8923422929685454 1.0122204634001817 0.27682205752197064 0.081103703812432 0.9157234566080821 2594.482680772858 0.03738457147991906 0.02073162806367555 53.676549418176464 -1.7297845895601194 0.11987817043163629 THPYS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 THPYSPK 7 0 M0QZ39;M0R1C6;H0YD59;E9PME6;M0QXT0;B1AQP1;B4DLJ1;Q15853-4;P22415-2;Q15853-3;P22415;Q15853-2;Q15853 M0QZ39 USF2;USF1 Upstream stimulatory factor 2;Upstream stimulatory factor 1 1 THPYS(1)PK;THPYS(1)PK;THPYS(1)PK;THPYS(1)PK 123.86 0.002707 1950960000.0 5719560.0 4473320.0 4030580.0 3886900.0 3758060.0 5227780.0 5570070.0 3096430.0 8175360.0 4478140.0 True False 5688766.524462858 4622211.752020956 4598050.629570608 4378981.141467169 4236626.665233245 4866395.873470425 5300624.43436625 3327501.3299529506 6160652.072211487 4192341.2712714574 1.35694261424895 1.1025370915519783 1.096773934192649 1.0445192454809642 1.0105634038586646 1.1607823787672082 1.2643590040461261 0.7937095562222163 1.4695015681161563 1.0 21.999324731412052 4.740720658986593 4.5813661311676945 1.0878080765303748 1.3744669343276794 0.1617786838739258 0.1686157311923888 0.32028356694676474 17.6990287177429 0.03810345069423915 0.29649356501930235 55045.3527254682 -4.740720658986593 0.2866588577973046 THQPERPRS(ph)PAAR ddPTM_BT-474_Trastuzumab_2h_R1 5 THQPERPRSPAAR 13 2 Q9P2Y4;G3V2Q8 Q9P2Y4 ZNF219 Zinc finger protein 219 1 THQPERPRS(1)PAAR;THQPERPRS(1)PAAR;THQPERPRS(1)PAAR;THQPERPRS(1)PAAR;THQPERPRS(1)PAAR 156.67 2.4676e-05 746838000.0 163824.0 228494.0 213677.0 241755.0 247585.0 232635.0 217428.0 72353.1 224705.0 161359.0 True False 162941.9897865576 236099.28466246027 243760.86428622142 272361.1582123013 279113.482198734 216553.49001388604 206910.17698438014 77752.45572359729 169329.46364273658 151060.93047360994 1.0786507753904193 1.5629407545831737 1.613659226922384 1.802988750025489 1.8476880906509086 1.4335506165289875 1.369713375494711 0.5147092334187661 1.1209348645731936 1.0 17.204771052872335 1.9323769901424692 5.1740584073205165 0.8406185641881219 1.5719777855043662 0.6008751452367136 0.2462277323497076 0.13715673414985868 6.94431571044043 0.11247055844456723 0.06778103983834745 85.58092773998915 -1.9323769901424692 0.7313592213162443 THS(ph)AGTS(ph)PTITHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 THSAGTSPTITHQK 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 2 T(0.114)HS(0.862)AGT(0.212)S(0.784)PT(0.022)IT(0.005)HQK 55.589 0.069461 291380000.0 325440.0 293150.0 223150.0 218260.0 277310.0 351030.0 323630.0 87076.0 450810.0 212360.0 True False 323687.867199783 302907.3205370825 254567.58034542936 245891.69362129795 312623.78475485544 326764.122335738 307974.78051334235 93574.05328296863 339713.91604451195 198807.002989457 1.628151233771924 1.523625003054576 1.2804759214590113 1.2368361774174421 1.5724988559454032 1.6436248090972265 1.5491143464884618 0.4706778527712678 1.708762321931524 1.0 17.601009051257616 1.8096222962941468 24.999973693406396 1.001904055352027 1.483078922334287 0.2865460091542589 0.3073043491749741 155.9537885518687 54876.079181230714 0.12309815684148463 0.07873721335867997 64.50929509356004 -1.8096222962941468 0.48117486698226 THS(ph)AGTSPTITHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 THSAGTSPTITHQK 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 T(0.132)HS(0.714)AGT(0.132)S(0.02)PTITHQK;THS(0.484)AGT(0.484)S(0.032)PTITHQK 187.0 6.4277e-07 228400000.0 174977.0 165814.0 141173.0 142333.0 148650.0 207592.0 182428.0 44009.9 236655.0 125750.0 True False 174034.9432737721 171333.01875332012 161048.9313022867 160352.34320626888 167579.69638242133 193241.65365900475 173603.26069736414 47294.142215744 178334.5462645326 117724.52734000864 1.478323567790842 1.455372322357948 1.3680151022152738 1.3620979997069242 1.4234900761030231 1.6414731749220761 1.4746566804721002 0.40173567296771046 1.5148461437392042 1.0 16.845055404714138 1.7886055228133202 24.999999999994408 0.90899279297754 1.4561823668990155 0.4132811535190881 0.26182236105663703 95.80932860577845 47875.711618652116 0.11236518632925753 0.06338434040100414 61.46183506162764 -1.7886055228133202 0.5471895739214755 THS(ph)DAS(ph)DDEAFTTSK ddPTM_BT-474_Trastuzumab_2h_R1 2 THSDASDDEAFTTSK 15 0 Q13017-2;Q13017;H0YK04 Q13017-2 ARHGAP5 Rho GTPase-activating protein 5 2 T(0.023)HS(0.977)DAS(1)DDEAFTTSK;T(0.001)HS(0.999)DAS(1)DDEAFTTSK 168.64 1.8165e-06 370360000.0 1088030.0 867790.0 699150.0 782370.0 806470.0 1100850.0 986930.0 467020.0 1125160.0 726300.0 True False 1082172.1673714973 896673.8655598664 797584.2428792597 881417.9617817964 909169.1741778101 1024750.8306221607 939188.4254612745 501871.40387950785 847879.3943715595 679946.9121832857 1.5915539110203183 1.318740992117573 1.1730095814660657 1.296304087846497 1.337117880657035 1.5071041757241337 1.3812672851849175 0.7381038061751268 1.246978814344562 1.0 19.37506258474134 1.7608254454955474 24.9999999845497 0.9753049307968129 1.3633683675125152 0.545784003422596 0.15720837134779972 8.102760689339357 9105.3796060095 0.07122664719684596 0.03950000638398309 57.653469218932784 -1.7608254454955474 0.3880634367157023 THS(ph)QGGYGSQGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 THSQGGYGSQGYK 13 0 K7ER00;Q9Y285;Q9Y285-2;K7EPH2;K7ERS0 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 1 T(0.186)HS(0.811)QGGY(0.003)GSQGYK;T(0.149)HS(0.841)QGGY(0.011)GSQGYK 128.79 0.00010385 112060000.0 264741.0 259303.0 206908.0 226315.0 204997.0 257944.0 258025.0 145059.0 334360.0 236376.0 True False 263315.6638714903 267933.7436030265 236038.84792342392 254966.45579540022 231102.15283758647 240112.9384148634 245543.34499877953 155884.0391746769 251961.4581944566 221290.281308325 1.1899106563320379 1.2107795336466354 1.0666480539854784 1.1521809918084653 1.0443393694076901 1.0850586704271603 1.1095984132112091 0.7044323783812394 1.1386015540528744 1.0 17.755580566261816 1.9504294232114152 24.594602607316627 0.9128814963408272 1.1214732602021176 0.32565592004974 0.11219355064052493 284.31271868522543 141062.0679427443 0.04450082370496984 0.028720519389760252 89.21326281709713 -1.9504294232114152 0.2085917638612904 THS(ph)TSSSLGSGESPFSR ddPTM_BT-474_Trastuzumab_2h_R1 2 THSTSSSLGSGESPFSR 17 0 Q5TH30;Q9UGV2;Q9UGV2-2;F8WBF9;Q9UGV2-3 Q5TH30 NDRG3 Protein NDRG3 1 T(0.143)HS(0.711)T(0.143)S(0.002)SSLGSGESPFSR;T(0.104)HS(0.723)T(0.171)S(0.002)SSLGSGESPFSR 265.63 9.259e-28 724550000.0 286140.0 274830.0 251180.0 322940.0 316260.0 367090.0 321120.0 99953.0 340400.0 234300.0 True False 284599.4540331424 283977.5504117568 286543.9607043017 363824.1708882154 356533.8363801179 341713.93233691127 305586.1988024733 107412.0004110498 256512.98112631027 219346.77340567778 1.2974863938699523 1.294651140760323 1.306351382586075 1.6586711773294671 1.625434606784551 1.5578707953224262 1.3931647776614307 0.4896903598959867 1.1694404122913369 1.0 17.742853958884382 1.8630644108439063 7.638663622860999 0.8455920448222508 1.4597112403078871 0.6166161468930139 0.20245932970287353 0.16060029718172317 9.242669108118454 0.08784139522380509 0.054587554768846774 72.95657051779773 -1.8630644108439063 0.6141191954856363 THSAGT(ph)SPTITHQK ddPTM_BT-474_Trastuzumab_2h_R1 1 THSAGTSPTITHQK 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 THSAGT(0.5)S(0.5)PTITHQK 220.93 1.6396e-11 116030000.0 147700.0 133340.0 118520.0 117730.0 123360.0 169790.0 148160.0 28638.0 210210.0 107860.0 True False 146904.79961101274 137778.14129426793 135206.58580569242 132634.60592887123 139069.1647879951 158052.81694266846 140992.9347738365 30775.11298081741 158406.56216968774 100976.2824564081 1.4548446034783682 1.3644604251869479 1.3389934994295487 1.3135223708213875 1.3772458383782535 1.5652469381698673 1.3962975398178652 0.30477565852261557 1.5687501888185729 1.0 16.623656943644445 1.9143908853676086 24.9999407684394 0.8730770246195393 1.399956695624615 0.31142394965975473 0.294335483931987 75.24057158994037 21970.62444967861 0.11436443914410124 0.07380965406703072 82.10902315056606 -1.9143908853676086 0.5268796710050757 THSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 THSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLR 36 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 180.07 2.2105e-23 1026200000.0 660540.0 734030.0 766280.0 860270.0 814560.0 958270.0 935350.0 229130.0 1006700.0 469650.0 False True 656983.7260328934 758461.7448194949 874165.5633748398 969180.09379453 918289.3877246227 892027.050424942 890103.54711601 246228.84409856473 758612.2740888848 439676.5349124054 1.494243321772405 1.725044855920272 1.9882015389995638 2.20430251977767 2.088556733889765 2.0288256925120103 2.0244508779467636 0.5600227088480392 1.7253872195840958 1.0 18.746083013881073 1.757487197076503 24.999999999961997 1.0708431664673 1.949839496023069 0.5854562721498449 0.3239994048914659 5.142789880632109 6799.675387490438 0.14599218058679306 0.08096132042109541 57.21200884060434 -1.757487197076503 0.878996329555769 THSLCNGDS(ph)PGPVQK ddPTM_BT-474_Trastuzumab_2h_R1 4 THSLCNGDSPGPVQK 15 0 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7 A0A1B0GWK2 KAZN Kazrin 1 THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK 207.82 8.0915e-12 544110000.0 573800.0 585410.0 524340.0 512590.0 537090.0 705190.0 663510.0 191391.0 668510.0 465943.0 True False 570710.7245551732 604895.017962182 598162.5143550179 577483.8414429637 605485.2279181618 656441.8751387032 631413.4864456562 205673.56828380586 503764.66807505727 436206.11882612825 1.3083510293047 1.3867183238740701 1.3712840983632453 1.3238783605260447 1.3880713767784358 1.5048891952851329 1.447511759222565 0.4715054636035203 1.154877582714189 1.0 18.73465048177952 1.7596245789083609 24.999999999999996 0.831018225634683 1.3910371412290066 0.6543974958961343 0.17047165287196875 5.081979937786812 6036.73336616529 0.07302159611125805 0.040495255094198705 57.494271954605864 -1.7596245789083609 0.5600189155943236 THSQGGYGSQGYK ddPTM_BT-474_Trastuzumab_2h_R1 2 THSQGGYGSQGYK 13 0 K7ER00;Q9Y285;Q9Y285-2;K7EPH2;K7ERS0 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 ; 198.85 1.2259e-07 483330000.0 396850.0 388400.0 372270.0 352960.0 390700.0 485630.0 443140.0 181570.0 528130.0 345420.0 False True 394713.40369417955 401327.6592072419 424682.3801711542 397644.69981019566 440453.32913967007 452059.5411500563 421703.625240807 195119.67539377842 397979.4380794305 323374.9998710596 1.2206058101324002 1.2410596346881009 1.3132814235500248 1.2296705062814066 1.362051269625956 1.3979421455904368 1.3040699664753128 0.603385158010295 1.230705645885174 1.0 18.302848622771577 1.77290873236329 24.999999999978456 0.9059502115554312 1.2980789029964128 0.5202831935521937 0.15301052646978336 23.14110088448621 16850.837074958657 0.06653498097610343 0.036916168394390436 59.28007335257498 -1.77290873236329 0.3921286914409816 THTDS(ph)SEKELEPEAAEEALENGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 T(0.167)HT(0.167)DS(0.333)S(0.333)EKELEPEAAEEALENGPK 119.35 0.00021758 93240000.0 215730.0 120760.0 127460.0 103890.0 110570.0 189460.0 178810.0 45891.0 268430.0 100680.0 True False 214568.53364985608 124779.4235990384 145405.26009781935 117042.46334791824 124650.43410026458 176363.0761408681 170160.27717946627 49315.61944977623 202279.02327771854 94254.51620351551 2.2764801337111216 1.3238561781974791 1.54268745896333 1.2417703475894855 1.3224876549269833 1.8711366122771538 1.8053275750952253 0.5232175755195999 2.146093698480773 1.0 16.524274126294866 4.74138249154285 23.71449207992491 1.391877882324937 2.2764808149065554 0.2528283958599563 0.4395825179287974 175.0997306869266 1471332.8592530945 0.10293291837758685 0.7078082877401832 55129.30170721297 -4.74138249154285 0.8846029325816185 THTDSSEKELEPEAAEEALENGPK ddPTM_BT-474_Trastuzumab_2h_R1 3 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 0 ;; 128.55 4.6107e-05 416330000.0 590260.0 440757.0 379988.0 420705.0 386653.0 597720.0 590510.0 140646.0 866420.0 360617.0 False True 587082.1057440507 455427.33030176716 433487.00748509506 473966.20986414474 435890.9676781193 556401.0232815354 561944.7753327363 151141.71870591678 652902.4004331895 337602.1143202536 1.7389763891915002 1.34900615542278 1.2840174545645286 1.403919554290867 1.2911381451380002 1.6480969747533227 1.6645179384145339 0.4476918606100371 1.9339404960415563 1.0 18.364964413759733 7.999995489114715 0.05656192979881773 0.45948082750367053 3.089401562585562 0.07252488210267749 0.3876976994525001 891.7153825047072 3.7798985469083446 37.460709847262095 196.4757820077741 99998961.33567284 -7.999995489114715 2.6299207350818916 THTGEKPYACSHCDK ddPTM_BT-474_Trastuzumab_2h_R1 1 THTGEKPYACSHCDK 15 1 A0A2R8Y595;A0A2R8YFL0;P49711-2;P49711 A0A2R8Y595 CTCF Transcriptional repressor CTCF 0 118.47 0.00018622 104810000.0 111590.0 127120.0 108800.0 110050.0 107630.0 175200.0 132520.0 37297.0 198060.0 83192.0 False True 110989.21183881444 131351.11235433727 124118.09429344692 123982.31871631925 121336.04252700975 163088.83637643856 126109.50132443858 40080.29153032849 149250.76686802882 77882.61533574539 1.4250832661480268 1.6865267272817392 1.5936559623528856 1.5919126262239902 1.5579348742198795 2.094033895412684 1.619225301831367 0.5146243658812141 1.9163553538183244 1.0 16.24901371081564 1.957178587413644 24.657922809207708 1.0840277998519599 1.6662805267917074 0.2931513507807484 0.3589084511168312 419.03270804246296 241291.50658501644 0.1404982641397525 0.09068263816600639 90.61051262497271 -1.957178587413644 0.5822527269397475 THTGEKPYPCDVCGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 THTGEKPYPCDVCGQR 16 1 Q9Y2D9;D6RF85;D6RDG5;Q9UFB7-2;Q9UFB7 Q9Y2D9 ZNF652;ZBTB47 Zinc finger protein 652;Zinc finger and BTB domain-containing protein 47 0 182.18 1.313e-09 98236000.0 171200.0 192670.0 175870.0 170160.0 186070.0 220700.0 197050.0 100330.0 239550.0 160180.0 False True 170278.27822210794 199082.9044785256 200630.9673105566 191702.2385531023 209764.91157670462 205443.52847191793 187517.93869589956 107817.13406541687 180516.11230554502 149957.1752630024 1.1355127083680083 1.3275983902028299 1.3379217563859813 1.27837989890704 1.3988321079588784 1.3700146599294152 1.250476600182827 0.718986163058365 1.2037844270469007 1.0 17.194191029445655 1.9116354512589973 7.915202016387866 0.9506203382868542 1.3127987067905575 0.5762389976657836 0.12821537548051215 0.1847294744493169 14.885617260433078 0.05172498812034521 0.032383008166790066 81.58972160456013 -1.9116354512589973 0.36217836850370333 THTGEKPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 THTGEKPYR 9 1 Q9HCG1;Q8N8E2-2;M0QZI7;Q8N8E2;Q9UJW8-3;G5E9B8;Q9NX65-3;Q8WXB4;Q9NX65;Q9UJW8;Q9UJW8-4;A0A0A0MP75;A0A1W2PQ54;Q9BSK1-2;O94892;Q86UD4;Q86TJ5;Q9BSK1;Q9NX65-2;Q9UJW8-2;E7EN86;P52747-2;P52747-3;P52747;Q99612;Q499Z4 Q9HCG1;E7EN86;Q99612;Q499Z4 ZNF160;ZNF513;ZNF180;ZSCAN32;ZNF606;ZNF577;ZNF432;ZNF329;ZNF554;ZNF143;KLF6;ZNF672 Zinc finger protein 160;Zinc finger protein 513;Zinc finger protein 180;Zinc finger and SCAN domain-containing protein 32;Zinc finger protein 606;Zinc finger protein 577;Zinc finger protein 432;Zinc finger protein 329;Zinc finger protein 554;Zinc finger protein 143;Krueppel-like factor 6;Zinc finger protein 672 0 ; 100.48 0.0027842 141716000.0 103412.0 107789.0 93085.0 96195.0 101008.0 110125.0 111833.0 34989.0 126540.0 86026.0 False True 102855.24128215332 111376.69170517355 106190.55889067576 108373.2771369045 113870.77007867894 102512.31795636583 106423.210546453 37600.056850541965 95355.9125491282 80535.74702943601 1.2771377317026622 1.3829472726498098 1.3185518581191389 1.3456543353014878 1.4139158607054194 1.2728797054418248 1.3214406579919729 0.46687413027657215 1.1840197187750103 1.0 16.297341667309297 1.772487411783964 24.999999803111972 0.831384552550907 1.3358283375208098 0.5795416195384864 0.17377501777698967 19.28814678990966 14219.723877574357 0.07399301154006672 0.04105227840968182 59.22259206992902 -1.772487411783964 0.5044437849699027 THTGERPNACADCGK ddPTM_BT-474_Trastuzumab_2h_R1 4 THTGERPNACADCGK 15 1 Q6DD87 Q6DD87 ZNF787 Zinc finger protein 787 0 ;;; 125.97 5.2368e-05 341654000.0 274352.0 240292.0 235841.0 233220.0 228374.0 301707.0 290139.0 96924.0 328389.0 201623.0 False True 272874.919315373 248289.97396041846 269045.36283328006 262745.6280874149 257456.07522125184 280850.7052318846 276103.8681313864 104156.96105009953 247461.93113715557 188755.24752186518 1.4456547454860216 1.315407000441971 1.4253662685701713 1.391991118323631 1.3639677762676687 1.487909390171265 1.4627612834943986 0.5518096181036457 1.311020140557893 1.0 17.52615722731711 1.7641432161504154 24.999999999132015 0.914767431909225 1.4101470361487731 0.5793846931406932 0.17825957631931738 9.391453101498206 9183.697453972025 0.07577278772896823 0.042022633855244074 58.095596625914915 -1.7641432161504154 0.4953796042395481 THTGERPYACANCGR ddPTM_BT-474_Trastuzumab_2h_R1 2 THTGERPYACANCGR 15 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 0 ; 108.71 0.00063516 150932000.0 31373.0 45871.0 42344.0 38838.0 34964.0 40528.0 38935.0 15269.1 41623.0 26558.0 False True 31204.091253867988 47397.78850539495 48305.66713935409 43754.88681785013 39416.45815213574 37726.39475265015 37051.56530385616 16408.55777691876 31365.569369625166 24863.045702552266 1.2550389693674895 1.9063548799465637 1.9428700617477193 1.7598361576980313 1.585343108149036 1.517368193904636 1.4902263281466237 0.6599576726528871 1.2615336731012563 1.0 14.601715415715603 1.9206264224934815 4.925329544207329 0.9535921008771393 1.6743979891687402 0.6410651877421951 0.22973212592307093 0.1311079879744556 5.507687939798255 0.10544212413583022 0.06268992339581067 83.29643654147115 -1.9206264224934815 0.7208058882916009 THTMEGK ddPTM_BT-474_Trastuzumab_2h_R1 4 THTMEGK 7 0 P33176;O60282;Q12840 P33176;Q12840 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A 0 ;;; 113.7 0.0060716 634752000.0 1909440.0 1787010.0 1551870.0 1607260.0 1568810.0 1404110.0 1904860.0 713921.0 2548470.0 1482430.0 False True 1899159.7871987266 1846489.5475796433 1770359.8069041497 1810738.9512039183 1768588.654434622 1307047.1806194135 1812714.6445281499 767197.4102373832 1920433.7162484357 1387820.0482278243 1.3684481569666451 1.3304963780697048 1.275640749796639 1.3047361244825222 1.2743645378902113 0.9417987456575846 1.3061597192250496 0.5528075568709757 1.383777182568253 1.0 20.40438908222585 2.7613628519790434 1.5007737262791652 0.9737234639861699 1.3281406677637395 0.2595319912516536 0.21621497941316029 0.4498150759410995 2.044156666393719 0.0861610692770883 0.08437705498678605 577.2485517276684 -2.7613628519790434 0.3544172037775696 THTRVS(ph)VQR ddPTM_BT-474_Trastuzumab_2h_R1 7 THTRVSVQR 9 1 P15880;H0YEN5;E9PQD7 P15880 RPS2 40S ribosomal protein S2 1 THTRVS(1)VQR;THTRVS(1)VQR;THT(0.002)RVS(0.998)VQR;THTRVS(1)VQR;THTRVS(1)VQR;THTRVS(1)VQR;T(0.001)HT(0.005)RVS(0.994)VQR 138.99 7.331300000000001e-05 2506941000.0 975081.0 860033.0 790685.0 968175.0 845887.0 858716.0 805904.0 271178.0 1020313.0 680138.0 True False 969831.2722376824 888658.6785040718 902006.5752427771 1090745.8557307813 953605.6954849459 799354.9841200338 766919.3446677513 291414.67937398265 768870.5326437401 636731.0105445618 1.5231412577317978 1.3956579211432625 1.416621085364351 1.713040259807552 1.4976586340115243 1.2554045128670401 1.204463630586873 0.45767313755419475 1.207528014044999 1.0 19.28032450357043 2.1934254993466946 2.2621698380691826 0.8359724614539132 1.495797537400633 0.6016011288049059 0.20844362094294247 0.177984713237123 1.8353123939123033 0.09616965837607598 0.06274934894355329 156.10812207358413 -2.1934254993466946 0.6598250759467197 THTTALAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 THTTALAGR 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 73.985 0.042373 45210000.0 35875.0 43004.0 38397.0 41331.0 43254.0 37658.0 47979.0 45349.0 60540.0 49088.0 False True 35681.85298608719 44435.36214353302 43802.96384729309 46563.50036223707 48762.14051345613 35054.791097396825 45658.07247242107 48733.172657556024 45620.728194438336 45955.161813648825 0.7764492948752837 0.9669286406545865 0.9531674379674031 1.0132376543696027 1.0610808141899224 0.7628042142370488 0.9935352345742471 1.060450463762313 0.9927226103442603 1.0 15.487939297749456 4.778101299559801 3.0424591676303967 0.9825547025707657 0.7321661613114887 0.36798472936542537 0.07932846994941413 0.5177187107285725 6.517317176730538 0.020001057533249846 0.3270170470027995 59993.099435503624 -4.778101299559801 -0.250388541259277 THTTALAGRS(ph)PS(ph)PASGR ddPTM_BT-474_Trastuzumab_2h_R1 10 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 THTTALAGRS(1)PS(1)PASGR;THTTALAGRS(1)PS(1)PASGR;THTTALAGRS(1)PS(0.972)PAS(0.028)GR;THTTALAGRS(1)PS(1)PASGR;THTTALAGRS(1)PS(1)PASGR;THTTALAGRS(0.977)PS(0.974)PAS(0.048)GR;THTTALAGRS(0.999)PS(0.997)PAS(0.003)GR;T(0.044)HT(0.046)T(0.046)ALAGRS(0.873)PS(0.967)PAS(0.023)GR;T(0.008)HT(0.009)T(0.009)ALAGRS(0.975)PS(0.97)PAS(0.028)GR;T(0.001)HT(0.001)T(0.001)ALAGRS(0.997)PS(0.995)PAS(0.005)GR 114.76 0.00019778 24556476000.0 3719611.0 5587551.0 5075443.0 6869554.0 6424196.0 6251932.0 6012273.0 1165036.0 5530566.0 3546671.0 True False 3699585.0276636365 5773529.257289094 5790021.257858602 7739238.832048759 7242279.281407101 5819750.65630491 5721436.385876745 1251976.9022529381 4167632.1150875813 3320319.4203221905 1.1142256389611587 1.738847540375755 1.7438145325478238 2.330871778383832 2.181199566849005 1.7527683091827908 1.723158425920829 0.37706519878483596 1.255190115017058 1.0 21.662890607266238 1.8409111166845167 7.024458858377922 0.8366704083308625 1.833101958868527 0.5721363656337344 0.3641703792602343 0.16935671910926042 9.93420060145199 0.1626416917472201 0.09951179932103049 69.32839030437478 -1.8409111166845167 0.9964315505376644 THTTALAGRS(ph)PS(ph)PASGRR ddPTM_BT-474_Trastuzumab_2h_R1 6 THTTALAGRSPSPASGRR 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 THTTALAGRS(1)PS(0.967)PAS(0.033)GRR;THTTALAGRS(0.999)PS(0.96)PAS(0.041)GRR;THTTALAGRS(1)PS(0.924)PAS(0.076)GRR;THTTALAGRS(1)PS(0.861)PAS(0.139)GRR;THTTALAGRS(0.99)PS(0.923)PAS(0.087)GRR;THTTALAGRS(0.999)PS(0.991)PAS(0.009)GRR 146.06 4.6422e-08 2958218000.0 231498.0 376198.0 337091.0 454843.0 395012.0 389633.0 412633.0 160445.0 422931.0 305169.0 True False 230251.64048984591 388719.523013507 384550.48275250365 512426.07716389693 445314.4367804441 362698.5878074251 392672.3653788643 172418.22062320166 318705.3220350514 285692.8531516743 0.8059411985626582 1.3606203960836774 1.3460276605111499 1.793625817065329 1.55871745431457 1.2695402905821676 1.3744563822546676 0.6035090437899923 1.1155523091291708 1.0 18.124105420926 1.7599413947554305 24.99999999999875 0.8749651831364113 1.379051057896178 0.37907096185073064 0.26329744281698086 9.883438384375072 11566.097544305198 0.12365741742984564 0.06857602255499903 57.53622906610755 -1.7599413947554305 0.5040858747597668 THTTALAGRS(ph)PSPAS(ph)GR ddPTM_BT-474_Trastuzumab_2h_R1 1 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 THTTALAGRS(0.981)PS(0.163)PAS(0.856)GR 177.91 1.1978e-08 116820000.0 226020.0 345750.0 307750.0 416460.0 390710.0 396240.0 394100.0 79720.0 376770.0 242910.0 True False 224803.1334331825 357258.0797397111 351078.5249890472 469183.79329939384 440464.6025803953 368848.86144863075 375035.8773917991 85669.11120995761 283920.0819593418 227407.2758342862 0.9885485528484085 1.5710054941252114 1.543831540574284 2.06318725545656 1.936897581506433 1.621974759142774 1.6491815225168576 0.3767210653030534 1.2485092260910642 1.0 17.79491888804305 1.7598811701353043 24.999999999827946 0.8265329178315396 1.6484919465276542 0.5111563878269209 0.334488038684685 7.562543780376454 8875.096018089982 0.15525830050600586 0.08610051993319573 57.528250937354045 -1.7598811701353043 0.8219590286961146 THVADFAPEVAWVTR ddPTM_BT-474_Trastuzumab_2h_R1 4 THVADFAPEVAWVTR 15 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ;;; 183.01 5.229899999999999e-07 2288090000.0 1852460.0 2079480.0 1965900.0 2037350.0 2089510.0 2159510.0 1983710.0 821080.0 2266830.0 1620590.0 False True 1842486.561187654 2148694.234727794 2242681.6320908773 2295278.3011057987 2355596.713003922 2010228.156639743 1887750.368791899 882353.1589597578 1708200.1204657857 1517162.5587430953 1.2144292321015857 1.4162584110353316 1.478207868475771 1.5128756558607268 1.552633038186385 1.3249919364640343 1.244263746104979 0.5815811587723005 1.1259176616386823 1.0 20.53294424299608 1.952186546530744 5.420260532360407 0.8636643494119032 1.4204549170208778 0.677358171177517 0.15779948894060605 0.10607411500181411 7.254064028252215 0.0686755461113665 0.04229465436495426 89.57494424801786 -1.952186546530744 0.5567905676089746 THVDSHGHNVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 THVDSHGHNVFK 12 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 44.61600000000001 0.070633 103050000.0 89855.0 102160.0 86851.0 83429.0 91145.0 127760.0 124180.0 16074.0 104220.0 41134.0 False True 89371.23066382906 105560.33384297582 99078.8658775751 93991.10284583202 102751.77549125996 118928.25191469076 118172.9389863326 17273.523502118136 78536.37747645135 38508.79290341085 2.3208006256647207 2.741200798159165 2.5728894210236164 2.440769906280467 2.668267887518201 3.0883401672181963 3.068726129191799 0.44856050267387537 2.0394401266598807 1.0 15.2329002806756 1.746643979513628 24.99999999999992 1.167032241251605 2.7005569558581968 0.7315248254596668 0.4268278223650802 0.8624772585182131 2674.3445734017223 0.18694553411522402 0.1036709699046862 55.8012566641109 -1.746643979513628 1.5335247146065918 THVEKEDGEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 THVEKEDGEAR 11 1 Q13573;G3V4X8;G3V3A4 Q13573 SNW1 SNW domain-containing protein 1 0 ;; 138.24 3.7107e-05 573350000.0 837510.0 869590.0 798850.0 920840.0 919980.0 944440.0 960440.0 366290.0 1221580.0 730130.0 False True 833000.9392161089 898533.7774717436 911321.1362713259 1037418.2495841469 1037133.9998513296 879153.085772623 913979.8479629019 393624.4197829321 920537.9773333671 683532.4783042587 1.2186706055031342 1.3145443793700498 1.3332521353369728 1.5177307333776233 1.5173148793518973 1.2861906546908637 1.3371417993631387 0.5758679101239712 1.3467362657251978 1.0 19.382650364097373 1.8915759061478978 10.309237076397316 0.9324276180018592 1.369468328310024 0.44763883243146685 0.1952471903657146 0.34374943825995746 30.69523610157639 0.07881155678626593 0.050147200779635484 77.90689686131928 -1.8915759061478978 0.4370407103081647 THYDPPR ddPTM_BT-474_Trastuzumab_2h_R1 6 THYDPPR 7 0 P31943;G8JLB6;E9PCY7;H0YB39;D6RBM0;H0YBD7;E7EN40;E5RGV0;P55795 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;; 101.64 0.0089085 5066760000.0 2254840.0 2602000.0 2285930.0 2461370.0 2490440.0 2658570.0 2481020.0 1245013.0 2823520.0 2061650.0 False True 2242700.191976276 2688605.997057782 2607769.074340251 2772979.1896300465 2807582.7720056307 2474789.313500621 2361003.584183211 1337922.1921079133 2127701.3292296077 1930073.7319326324 1.161976433786601 1.3930068849575046 1.351124069093995 1.4367218949990015 1.4546505273631831 1.282225270753025 1.2232711865463697 0.6931974514612027 1.102393807048545 1.0 20.880224531150034 1.9382687707524486 5.514241699229981 0.9065013280672547 1.3508080473833246 0.6899055587665432 0.12390967955060733 0.10838448630005115 6.624521048405279 0.0536271414002649 0.03268729526422866 86.74985763673156 -1.9382687707524486 0.4443067193160699 THYDPPRK ddPTM_BT-474_Trastuzumab_2h_R1 6 THYDPPRK 8 1 P31943;G8JLB6;E9PCY7;H0YB39;D6RBM0;H0YBD7;E7EN40;E5RGV0;P55795 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;; 113.26 0.0018719 4595410000.0 2320740.0 2375030.0 2211840.0 2108730.0 2198960.0 2164720.0 2345070.0 1377330.0 2699860.0 2106800.0 False True 2308245.3936984544 2454081.4378140494 2523247.846342078 2375695.001787041 2478984.5217429483 2015078.0016027624 2231630.005062643 1480113.3585400244 2034515.6792705026 1972342.220277773 1.1703067398584486 1.2442472774671076 1.279315435425156 1.2045044604138029 1.2568734250356528 1.0216675285280719 1.1314618640310572 0.7504343532896507 1.0315226527899268 1.0 20.911478464175204 2.364386307700755 1.5148558436374766 0.9164813212940286 1.234155002359042 0.6198184216889546 0.09484847102470366 0.22243646050617705 1.0283570806401934 0.047314215119344034 0.03216013465277942 231.412230144417 -2.364386307700755 0.31767368106501337 THYSNIEANESEEVR ddPTM_BT-474_Trastuzumab_2h_R1 5 THYSNIEANESEEVR 15 0 A0A0C4DGQ5;K7ELJ7;P04632;U3KQE2;K7EIV0;A0A075B7C0;K7EM73 A0A0C4DGQ5 CAPNS1 Calpain small subunit 1 0 ;;;; 284.74 5.208899999999999e-34 3783570000.0 1004143.0 1872872.0 2254980.0 2328560.0 2431170.0 2406320.0 2332070.0 1006211.0 1775319.0 1822027.0 False True 998736.8056587763 1935209.4123449663 2572461.583362475 2623355.4572473653 2740765.0888264454 2239976.76226799 2219258.864727463 1081299.5742559272 1337815.4205058157 1705743.6769442037 0.5855140014049401 1.134525332558667 1.5081173204000817 1.5379540857786087 1.6067860170740638 1.3131965796179008 1.3010506178180352 0.6339168005553143 0.784300383808239 1.0 20.701969437677448 1.7621739308703332 11.437462307036483 0.7837352859845734 1.3101555383426637 0.3702960687406225 0.28361944970724434 0.24790946805643047 114.65133951310031 0.13987407560263038 0.07699392409550417 57.83276158229006 -1.7621739308703332 0.5264202523580903 TIADHCPDSACK ddPTM_BT-474_Trastuzumab_2h_R1 4 TIADHCPDSACK 12 0 P35221-2;P35221;G3XAM7;P35221-3 P35221-2 CTNNA1 Catenin alpha-1 0 ;;; 165.7 5.3905e-05 2428790000.0 3122820.0 3132460.0 3007610.0 2777280.0 2906130.0 4000110.0 3512640.0 3284790.0 4713400.0 3492140.0 False True 3106007.0840979186 3236722.0374879465 3431055.345385239 3128883.363239066 3276208.429517967 3723591.810946093 3342720.183612108 3529917.7096256474 3551845.726324174 3269268.6354285306 0.9500617509490125 0.9900446853501478 1.0494871263264978 0.9570591199915075 1.002122735958199 1.1389678323139727 1.022467272156101 1.0797270286609382 1.0864343443158515 1.0 21.640536497385998 2.9698671073975205 24.263906308286263 1.0678449416009597 0.9899169776605768 0.4399380429619646 0.04292316540384089 421.7627712598108 339616.0984500779 0.012370832856515517 0.013141285584684947 932.9687719112479 -2.9698671073975205 -0.07792796394038282 TIADLELHYQEFIR ddPTM_BT-474_Trastuzumab_2h_R1 4 TIADLELHYQEFIR 14 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 ;;; 164.09 4.177e-06 1390610000.0 846050.0 1001720.0 947550.0 971590.0 965090.0 1101400.0 1045410.0 846510.0 1088190.0 1071260.0 False True 841494.9608049913 1035061.6446474732 1080956.8037477557 1094593.194380634 1087988.4909634113 1025262.810416722 994839.524445981 909680.8746906826 820020.1554989399 1002891.2696481721 0.8390689861127211 1.0320776299215237 1.0778404762930782 1.0914375541075676 1.0848518916164187 1.022307045086152 0.9919714674502893 0.9070583244879687 0.8176560912596379 1.0 19.935733771243896 1.84534475542247 2.6829896726108093 0.8952294886574299 1.0323526537489212 0.2949759467073535 0.07928195825683976 0.3018053579333663 3.9565397711028405 0.04523529302981272 0.0224665738755189 70.03977712276973 -1.84534475542247 0.13712316509149125 TIAECLADELINAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIAECLADELINAAK 15 0 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed 0 ; 227.57 1.6588e-12 88148000.0 195420.0 223831.0 206497.0 201844.0 209211.0 223733.0 240261.0 218979.0 299430.0 227271.0 False True 194367.8804332029 231281.07952630345 235569.98269589993 227397.42970446855 235852.78075925182 208266.864320832 228638.65754384972 235320.32493283134 225639.48865643668 212766.37020350754 0.9135272658329097 1.0870189650041353 1.1071767707959725 1.0687658462517673 1.1085059191152367 0.9788523633769198 1.0745996057796192 1.1060033815858743 1.0605035393545335 1.0 17.698910611296785 4.7421437248445955 24.720550295226264 1.0710143527467058 0.9135271956425569 0.535537764963253 0.04225988262640463 219.13037505074217 1511747.0249257172 0.00981162612442821 0.07212886183944091 55226.01732975523 -4.7421437248445955 -0.15748715710414884 TIAS(ph)DS(ph)EEEAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TIASDSEEEAGK 12 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 TIAS(1)DS(1)EEEAGK;TIAS(1)DS(1)EEEAGK;TIAS(1)DS(1)EEEAGK 263.12 2.7353e-21 1482370000.0 7377570.0 5453160.0 4290530.0 4249140.0 4430710.0 5935120.0 5497090.0 5704790.0 7934920.0 5710130.0 True False 7337849.982845082 5634665.134095168 4894599.330044701 4787080.688325866 4994934.655624344 5524839.124169688 5231174.755776926 6130510.398136656 5979465.288480558 5345704.614711757 1.3726628221564656 1.0540547112513794 0.9156135033302097 0.8955004126399879 0.9343828392384291 1.0335099902386937 0.9785753483984811 1.1468105404225026 1.1185551240569198 1.0 22.34994869073156 4.7258157560721035 4.054081258762886 1.0077149840006576 1.4002047407320093 0.6694385197780253 0.07737591299217271 0.1462468885101979 5.1479786870461925 0.021600519964484532 0.16480307134671432 53188.25669608837 -4.7258157560721035 0.39248975673135167 TIAS(ph)DS(ph)EEEAGKELSDK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIASDSEEEAGKELSDK 17 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 TIAS(1)DS(1)EEEAGKELSDK;TIAS(1)DS(1)EEEAGKELSDK 207.17 3.5991e-12 915430000.0 2962300.0 1733480.0 1551430.0 1468540.0 1572630.0 2545600.0 2454610.0 2528200.0 4284100.0 2435100.0 True False 2946351.305942468 1791177.8338892122 1769857.8587287015 1654457.0134271996 1772895.1087917087 2369628.663697844 2335871.136779205 2716867.12193947 3228340.9589988976 2279689.8332060045 1.2924351650938912 0.7857111997425626 0.7763590611972379 0.7257377689404707 0.7776913696625241 1.0394522224829839 1.024644275179396 1.1917705129730953 1.4161316649198603 1.0 21.12040611891805 2.1363558044742392 1.6083011694696676 1.220492607620617 0.860087991191919 0.36277180966912737 0.18170146675961524 0.38099735810822805 1.8968242833045297 0.1065029766234466 0.05869694264781241 136.88498240355685 -2.1363558044742392 -0.36040461642869803 TIDDLEDKLK ddPTM_BT-474_Trastuzumab_2h_R1 3 TIDDLEDKLK 10 1 P06753-2;A0A087WWU8;P06753-5;P06753-7;J3KN67 P06753-2;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;; 156.51 9.8676e-06 2678400000.0 4319560.0 3434120.0 2741710.0 2438900.0 2519690.0 4309510.0 4188490.0 3777980.0 7149050.0 4259090.0 False True 4296303.968908229 3548422.608230625 3127718.936629475 2747664.4899339504 2840557.586127301 4011603.7171953577 3985876.7371143857 4059912.0517937257 5387262.419862064 3987271.2298096037 1.0775048200353758 0.8899376048717071 0.7844259285011888 0.6891090000077958 0.7124064109034641 1.0061025413079099 0.9996502638985799 1.0182181792502716 1.351115113410359 1.0 21.926970315766017 2.0723722675749934 1.3896877447305105 1.139487238719815 0.8316607196156048 0.4434659684531046 0.1386405237009563 0.40655828044013503 1.4759398351067285 0.09596148909222585 0.04811902789311816 118.13328140070652 -2.0723722675749934 -0.3078265191042101 TIDDLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TIDDLEEK 8 0 P67936;A0A2R8YE05;K7ENT6;A0A5F9UN72;K7EPB9;P67936-2 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain 0 126.41 0.0028389 225880000.0 334680.0 325500.0 268710.0 279630.0 259070.0 380980.0 365700.0 291190.0 509800.0 353810.0 False True 332878.12006644387 336334.0707310947 306542.0323308102 315031.1293288903 292061.02887180564 354643.7493304545 348009.6938903354 312920.0764328592 384166.6209700143 331229.54288801935 1.0049771441401345 1.0154108471079255 0.9254670632880251 0.9510961087048768 0.881748126466317 1.0706887623558112 1.05066018826705 0.9447227252269881 1.1598199170896168 1.0 18.337471829270573 2.7192744199806285 24.998331637169255 1.03419288146933 0.9571150972212842 0.3322133988716226 0.062423167358450375 1160.7726007415836 1504565.4606436028 0.020460033862724925 0.019316874520691127 523.9313913484093 -2.7192744199806285 -0.07707778424804579 TIDLGAAAHYTGDK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIDLGAAAHYTGDK 14 0 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ; 188.25 8.543e-07 879210000.0 1511150.0 1571800.0 1505390.0 1501760.0 1450270.0 1763260.0 1840760.0 1584530.0 2246420.0 1745080.0 False True 1503014.1363045475 1624116.4128268359 1717335.8269155526 1691882.6620210793 1634953.2880762473 1641369.9864675761 1751715.4064139263 1702775.674680306 1692819.8914857993 1633707.500361847 0.9200019807533769 0.9941292504729967 1.051189289719967 1.035609288471986 1.0007625524851447 1.004690243574221 1.072233191085884 1.042276952455174 1.0361829710097186 1.0 20.63971827523641 4.637325634139904 2.7415905969733556 1.032690599490829 0.9105073864039771 0.690368856970387 0.022390950303412344 0.19593278196488395 2.2441645804516956 0.005777280373794362 0.047994183884164154 43383.60468717507 -4.637325634139904 -0.12218321308685198 TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK ddPTM_BT-474_Trastuzumab_2h_R1 5 TIDLGAAAHYTGDKASPDQNASTHTPQSSVK 31 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 TIDLGAAAHYT(0.061)GDKAS(0.937)PDQNASTHT(0.001)PQSSVK;TIDLGAAAHYTGDKAS(1)PDQNASTHTPQSSVK;TIDLGAAAHYTGDKAS(1)PDQNASTHTPQSSVK;TIDLGAAAHYT(0.001)GDKAS(0.998)PDQNAS(0.001)THTPQSSVK;TIDLGAAAHYT(0.053)GDKAS(0.947)PDQNASTHTPQSSVK 359.94 3.1400999999999993e-121 10927100000.0 3449890.0 3173750.0 3392330.0 3009170.0 3348820.0 4651530.0 4522310.0 4194290.0 5798900.0 4602970.0 True False 3431316.1755588134 3279386.35017761 3869940.577339053 3390130.613462848 3775272.3769887686 4329980.679623829 4303548.588398149 4507289.21797307 4369838.796278961 4309204.513799118 0.7962760097764928 0.7610189629376418 0.8980637992340732 0.7867184308859855 0.8760949648361852 1.0048213459719029 0.998687478075627 1.0459678122817417 1.0140708760249548 1.0 22.03899013935338 2.8345250514725904 2.4415691154524524 1.0204609731031822 0.8125858308619092 0.8785725353428092 0.03574531887961541 0.09207264605222726 1.0763446354279889 0.011963722600856664 0.012641497512482381 683.1641238995725 -2.8345250514725904 -0.20787514224127301 TIDQIHK ddPTM_BT-474_Trastuzumab_2h_R1 4 TIDQIHK 7 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ;;; 105.81 0.0078435 2213440000.0 3155390.0 3261380.0 2947850.0 2842250.0 2898360.0 3520560.0 3453260.0 3102210.0 4240960.0 3545690.0 False True 3138401.7308367826 3369933.061754161 3362881.65682847 3202078.5585775445 3267448.9660743694 3277191.973706818 3286212.6210657307 3333712.6629031887 3195832.2339525158 3319401.0285820696 0.9454723017234818 1.015223238390595 1.01309893799273 0.9646555300205347 0.9843489647498567 0.9872841351461286 0.9900016878856859 1.0043115110822367 0.9627737674461293 1.0 21.662491506362002 2.2064874367936005 5.098902849697587 0.9912864432736114 0.9866899925380311 0.0023885614712377823 0.02181982651270797 1.5767441127198838 101.35388637090779 0.008184212685850532 0.006148069055662178 160.8745839654481 -2.2064874367936005 -0.0045964507355802375 TIEAEAAHGTVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TIEAEAAHGTVTR 13 0 P48735;P48735-2;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ; 301.93 5.3648e-41 2762800000.0 804880.0 1086200.0 1281290.0 1088580.0 1441810.0 2282100.0 1194210.0 907700.0 1219750.0 1358890.0 False True 800546.615510575 1122353.510378235 1461684.4948276742 1226394.1163853772 1625415.957222598 2124343.7984855627 1136441.49997478 975437.1832072058 919158.9563126232 1272164.476795738 0.6292791774275527 0.8822393101284834 1.1489744616272335 0.9640216644583216 1.277677522734019 1.6698656795041547 0.8933133417128498 0.7667539858242909 0.7225158170017081 1.0 20.278853776516737 2.016389921640275 24.999509780013767 0.810388479922796 1.1063443633047128 0.17886192102354137 0.26313053227884325 388.64877490338256 592802.7090100223 0.10525845605067898 0.07771872500239753 103.84603559259637 -2.016389921640275 0.2959558833819168 TIEDAIAVLSVAEEAADRHPER ddPTM_BT-474_Trastuzumab_2h_R1 6 TIEDAIAVLSVAEEAADRHPER 22 1 Q96CT7 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 0 ;;;;; 138.35 9.7149e-07 431620000.0 157941.3 190711.0 193497.0 196729.0 185482.0 206923.0 209523.0 178959.0 229800.0 206122.0 False True 157090.9615897279 197058.70034776593 220739.69569392572 221634.87122892097 209102.03326205362 192618.90005434846 199387.57203441238 192313.8293153889 173168.86916223876 192967.1174900775 0.8140815058700642 1.0212035237449137 1.1439238900652402 1.1485628956462883 1.0836148457926038 0.9981954571314621 1.033272272643369 0.9966145103726172 0.8974009220568018 1.0 17.55799550081245 1.5560516734811016 3.091803024610749 0.9476174434695839 1.043478798976345 0.11606350302614199 0.09142810819755438 0.4354116991256944 9.350594683865214 0.06548653032618125 0.025370133554426025 35.97921416089749 -1.5560516734811016 0.09586135550676111 TIEDLDENQLKDEFFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TIEDLDENQLKDEFFK 16 1 Q9H993;F5GZY1 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 194.58 1.7358e-10 131480000.0 225720.0 177020.0 151730.0 140330.0 139350.0 231280.0 220580.0 201290.0 321550.0 230540.0 False True 224504.74859984955 182912.00368915012 173092.26513919787 158095.76361164078 157095.39650784005 215292.15797455894 209909.70270257082 216311.281929909 242308.31104925068 215826.7398247762 1.0402082187875274 0.8474946331379113 0.8019963850620491 0.7325124020313442 0.7278773549347106 0.9975230972276593 0.9725843186668657 1.0022450513107235 1.1226982868108657 1.0 17.719514092843504 2.6387435542782365 6.724162738899511 1.0156101915794353 0.8243701810162704 0.5296537227585776 0.0890287430190359 0.21289926252813746 12.326470518428966 0.030480025413100856 0.028692866398348473 435.25478501981775 -2.6387435542782365 -0.19124001056316497 TIEELSNAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TIEELSNAR 9 0 Q15643-2;Q15643;H0YJ97 Q15643-2 TRIP11 Thyroid receptor-interacting protein 11 0 ;;; 78.113 0.030692 16616990000.0 3588674.0 9275320.0 8838770.0 10512290.0 9149460.0 6028520.0 6668650.0 4670060.0 2315853.0 5879190.0 False True 3569352.9779231595 9584043.419150665 10083191.988033915 11843144.836150628 10314589.497901833 5611782.602009636 6346061.922783112 5018563.591284181 1745142.0589903302 5503975.060772207 0.6485045696087112 1.7412948484192488 1.8319835894422176 2.151743913332528 1.8740254786791672 1.0195872147033864 1.152996126020375 0.9118071095656596 0.31706939797534023 1.0 22.39204250233988 2.6228664694280375 4.164325511150106 0.8798087499774664 1.6910984511879001 0.45584649842457425 0.42066043985080254 0.22224906081533718 6.5339794919769405 0.14516979696090854 0.1360473687762377 419.6299424221753 -2.6228664694280375 0.8112897012104338 TIEGQS(ph)PEPVFGDADVDVSAVQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIEGQSPEPVFGDADVDVSAVQAK 24 0 Q9Y2I9;F8VZ81;Q9Y2I9-2 Q9Y2I9 TBC1D30 TBC1 domain family member 30 1 T(0.006)IEGQS(0.994)PEPVFGDADVDVSAVQAK;T(0.044)IEGQS(0.956)PEPVFGDADVDVSAVQAK 221.83 5.7638e-33 286490000.0 364120.0 317520.0 293920.0 289540.0 282690.0 360590.0 360560.0 329120.0 435970.0 379880.0 True False 362159.61837753543 328088.46125510713 335301.3812015621 326195.73431279504 318688.89586509706 335663.2620375574 343118.33532704157 353680.605637497 328531.0351986999 355635.7331683691 1.0183442905217788 0.9225407647655579 0.942822528586631 0.9172186703701222 0.8961104471305187 0.9438400889784713 0.9648027555335633 0.9945024435158587 0.9237852233570777 1.0 18.440040763381827 2.226808598785967 3.9347115398324495 0.9735236018579226 0.9360423589896857 0.14936734149698705 0.03550842044771891 0.3632491290597361 12.467166697270832 0.013502068635386472 0.01019430927416657 168.58098955843315 -2.226808598785967 -0.03748124286823695 TIEKFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TIEKFEK 7 1 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5;P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 A0A2U3TZH3;P68104 EEF1A2;EEF1A1;EEF1A1P5 Elongation factor 1-alpha 2;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;; 103.56 0.0076133 27991800000.0 14431120.0 14974560.0 15362720.0 15953610.0 14382980.0 17233950.0 20095230.0 16514000.0 29117600.0 19602110.0 False True 14353424.453368148 15472979.17728734 17525657.440843962 17973335.390239518 16214567.248398514 16042607.600854585 19123146.953666586 17746358.53639288 21941957.63585032 18351086.557589315 0.7821566536850165 0.8431641978653467 0.9550201502153568 0.9794153242008674 0.8835753238651028 0.8742047807637837 1.042071644839906 0.9670467457445269 1.1956762106152214 1.0 24.12936215097688 1.9533250182544846 1.331240635910942 1.0756761511376265 0.889271673103628 0.5065634136179902 0.07765417169808474 0.3822155570375194 1.2562400457418832 0.05712470059694134 0.02583147493084147 89.81006656021303 -1.9533250182544846 -0.1864044780339985 TIELDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TIELDGK 7 0 Q9H0U4;E9PLD0;H0YMN7;H0YNE9;Q92930;P61006-2;P61006;P62820;P62820-3 Q9H0U4;P62820 RAB1B;RAB8B;RAB8A;RAB1A Ras-related protein Rab-1B;Ras-related protein Rab-8B;Ras-related protein Rab-8A;Ras-related protein Rab-1A 0 85.212 0.048802 154000000.0 317900.0 299170.0 288760.0 246800.0 268790.0 308640.0 326570.0 289070.0 409920.0 300430.0 False True 316188.4617220106 309127.69259791606 329414.8980530864 278044.85469502595 303018.81325685204 287304.443260411 310772.5614814511 310641.87126771716 308900.7086465837 281256.3001889363 1.1242004588327739 1.0990960643024064 1.1712267345897645 0.9885817829084965 1.0773760909650614 1.0215040269939262 1.1049443559937573 1.1044796900870872 1.0982890283313727 1.0 18.101525887742607 1.1220597780019004 0.008832424674071358 4.448484664676416e-07 2.132344656757457 0.20416167535715868 0.04916418672844928 3203.0709670120887 21.61474490689805 2630.6588000249308 2584.5801673095802 13.245238353222286 -1.1220597780019004 2.1323442119089906 TIFPHTAGS(ph)NK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIFPHTAGSNK 11 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 TIFPHT(0.001)AGS(0.999)NK;TIFPHT(0.001)AGS(0.999)NK 72.321 0.030025 679090000.0 906190.0 917830.0 831260.0 787480.0 734930.0 988540.0 1013300.0 852650.0 1278310.0 993160.0 True False 901311.1737271745 948379.4167100474 948294.182558556 887174.8872578569 828518.9792286106 920204.5565728572 964282.807818094 916279.0726689716 963287.6289764197 929775.6785129445 0.9693856212379148 1.0200088458184422 1.0199171740814186 0.9541816459178389 0.8910955603331324 0.9897059880557479 1.0371133920822055 0.9854840192576784 1.0360430491331771 1.0 19.826523162126676 2.473523875041806 24.975448696340813 1.011562975669332 0.9719337892435965 0.23718684190023942 0.03679127538006546 186.9739428943044 1298078.0142276515 0.013836658863344 0.011624788712459033 297.525281687171 -2.473523875041806 -0.03962918642573554 TIFTGHTAVVEDVSWHLLHESLFGSVADDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIFTGHTAVVEDVSWHLLHESLFGSVADDQK 31 0 Q09028-3;Q09028;Q09028-2;Q09028-4 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 ; 144.44 6.048e-09 303810000.0 472970.0 615300.0 458220.0 494660.0 430600.0 372630.0 370830.0 118105.0 318210.0 269000.0 False True 470423.58207190747 635779.888543295 522733.39308036066 557283.9052813671 485434.3576338416 346870.9651766684 352891.53619183187 126918.59482503799 239791.40929554412 251832.18969751347 1.8680041762609998 2.5246172433593883 2.0757211129690702 2.2129176812175797 1.9276104385897521 1.3773893067177398 1.401296381593255 0.5039808253960123 0.9521872862383793 1.0 17.942103177465235 2.4747389844380563 1.209963908579511 0.7860786758978887 2.2048420736153918 0.8507472679335507 0.23511005795953735 0.1488627197695126 0.4397108356674842 0.12594952826046898 0.09048062379870986 298.35889115646796 -2.4747389844380563 1.4187633977175031 TIGGGDDS(ph)FNTFFSETGAGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TIGGGDDSFNTFFSETGAGK 20 0 P68363;P68363-2;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;F8VX09;F8VRK0;F8W0F6;F8VXZ7;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain 1 TIGGGDDS(0.999)FNT(0.001)FFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK 310.98 2.9956999999999997e-66 299754000.0 593185.0 484007.0 421609.0 432949.0 440207.0 627930.0 541334.0 561708.0 816011.0 699291.0 True False 589991.3578690498 500116.88040659 480967.88250887825 487760.2990087395 496264.7521386914 584522.6770882251 515147.60632329993 603625.503255429 614916.0230371964 654661.6496868536 0.9012157015020846 0.7639318427248831 0.7346816217796492 0.745057082910006 0.7580476913166844 0.8928622554380904 0.786891375979809 0.9220419487595815 0.9392882924046813 1.0 19.320389942248042 1.5689281613060855 0.8982093823059294 0.9991629952879852 0.7804309948223985 0.636780141388086 0.05522518702143725 0.32615331710706047 0.518510809927802 0.04982732683209793 0.019758346666094218 37.061941081107875 -1.5689281613060855 -0.21873200046558672 TIGGGDDSFNTFFSETGAGK ddPTM_BT-474_Trastuzumab_2h_R1 5 TIGGGDDSFNTFFSETGAGK 20 0 P68363;P68363-2;F8VQQ4;F8VVB9;F8VS66;F8VRZ4;F8VWV9;F8VX09;F8VRK0;F8W0F6;F8VXZ7;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain 0 ;;;; 448.67 1.7655999999999984e-197 1946700000.0 1355130.0 1278589.0 1210694.0 1162140.0 1233013.0 1480760.0 1494970.0 1366480.0 1759590.0 1524370.0 False True 1347834.1306490966 1321146.0619416286 1381149.1916591062 1309266.8048431023 1390029.896909374 1378398.5465341052 1422652.5897600057 1468453.6764448436 1325962.621798015 1427083.4015211822 0.944467666859827 0.9257665393160407 0.9678125260141678 0.9174423887542279 0.9740355016586197 0.9658850667485993 0.9968951977463592 1.0289893883423795 0.9291416467913657 1.0 20.44463822049734 2.7685812509175634 1.6594103844565447 0.9941257886796296 0.9405291583203489 0.35339112373012493 0.02778074300917262 0.3590266431427643 1.9754802077985958 0.010663780641737208 0.010606582593103474 586.9231651309445 -2.7685812509175634 -0.05359663035928075 TIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGK 34 1 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 ; 254.75 1.1169999999999999e-59 237312000.0 428780.0 410220.0 408470.0 372570.0 367990.0 517950.0 607180.0 541370.0 667030.0 610430.0 False True 426471.49612193636 423873.92471677304 465979.02551511297 419737.3237995369 414851.345252386 482145.335623153 577808.383747152 581769.778421158 502649.394244073 571471.8347845838 0.7462686175648442 0.7417232117424514 0.8154015598874854 0.734484708170713 0.7259348930271676 0.8436904607991706 1.0110881211931588 1.0180200370512678 0.8795698469261335 1.0 19.124322870832966 2.4174440235479326 3.632358772080204 0.9835046571060688 0.7558819640488165 0.8557513273016915 0.04330148676612514 0.08020670776924202 2.170049502599947 0.015958037148003996 0.013317128304979718 261.4833399117734 -2.4174440235479326 -0.22762269305725236 TIHWIK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIHWIK 6 0 P78406;E9PQ57;E9PPG9;B0QZ36 P78406 RAE1 mRNA export factor 0 ; 131.65 0.015236 4441900000.0 6300300.0 6883200.0 6315000.0 6354700.0 6373200.0 7018100.0 7292400.0 6226600.0 7961400.0 7093200.0 False True 6266379.88482913 7112303.15101774 7204097.1090360135 7159204.368437937 7184789.243084069 6532955.265830393 6939638.752326716 6691260.510034148 5999419.647294379 6640505.903205956 0.9436600126812322 1.0710483891873368 1.0848717272516786 1.0781112874218755 1.081964137644293 0.9838038488417518 1.0450466957609874 1.0076431837525643 0.9034582206150786 1.0 22.662861725993295 1.4805336666320372 4.051550965814909 0.9511454953073102 1.0441787549786576 0.34363320583260804 0.048563076726846455 0.20272363862783202 6.789628779391401 0.03221333294586506 0.012410275703113196 30.236649567957503 -1.4805336666320372 0.09303325967134746 TIINADKDGDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TIINADKDGDGR 12 1 F6U1T9;D3YTA9;H7BYZ3;P63098 F6U1T9 PPP3R1 Calcineurin subunit B type 1 0 84.365 0.011197 653030000.0 452640.0 364370.0 337980.0 264860.0 230780.0 368030.0 352940.0 279170.0 606500.0 340640.0 False True 450203.03653303126 376497.83518368413 385564.6462251766 298391.24884329253 260168.46505977272 342588.9523494329 335866.94383826846 300003.0829965359 457036.20168362855 318900.06356342323 1.4117370548704653 1.1806138605827081 1.2090453727629784 0.9356888973587429 0.815830709321982 1.0742831108947033 1.0532043803480486 0.9407432524292078 1.4331643480300926 1.0 18.282744859586177 4.4690921869835245 1.4481923556420457 1.028041317159451 1.4426755584639774 0.3306700172262257 0.15784471186881863 0.8117553765464383 2.257308826070295 0.04332055542809888 0.42290830510441035 29450.467077307978 -4.4690921869835245 0.41463424130452653 TIISYIDEQFER ddPTM_BT-474_Trastuzumab_2h_R1 6 TIISYIDEQFER 12 0 Q15019-2;Q15019-3;Q15019;B5MCX3;C9J2Q4;C9J938;C9JB25;C9IY94;H7C310;C9IZU3;C9JQJ4 Q15019-2 SEPT2 Septin-2 0 ;;;;; 212.82 4.686100000000001e-07 363419000.0 866720.0 903310.0 853645.0 835132.0 791103.0 898394.0 888877.0 846266.0 996331.0 886477.0 False True 862053.6758216448 933376.1272875742 973830.7959846471 940859.6255719878 891845.2778151539 836290.1373719998 845878.6236701113 909418.6661716743 750798.5752014028 829901.2789088561 1.0387424356726649 1.124683321990738 1.1734296846307162 1.1337006575155764 1.0746402017692285 1.0076983354834008 1.0192521028311488 1.0958154774353002 0.9046842007383619 1.0 19.66258020499354 2.9734833863031183 3.3832003634920347 1.0198408573111715 1.1216317150044748 0.4795023755341701 0.05421725663061601 0.23660103022121678 5.609177667337754 0.017230821546766605 0.019507259817930767 940.7698407146513 -2.9734833863031183 0.10179085769330332 TILHYMGTSTFSEYTVVADISVAK ddPTM_BT-474_Trastuzumab_2h_R1 4 TILHYMGTSTFSEYTVVADISVAK 24 0 P11766;H0YAG8 P11766 ADH5 Alcohol dehydrogenase class-3 0 ;;; 202.43 1.3101e-24 483954000.0 230306.0 228033.0 252647.0 210484.0 231311.0 292378.0 279684.0 279071.0 338771.0 317130.0 False True 229066.0580854018 235622.9405561405 288217.5015529095 237131.2528185893 260767.08476228872 272166.59704378055 266154.6164233648 299896.6951138241 255285.4263488286 296890.49189134716 0.7715506705052481 0.7936358589832216 0.9707872411703514 0.7987162246521929 0.8783275041954577 0.9167238577090747 0.8964740323202038 1.0101256298351822 0.8598639340806349 1.0 18.17957136526609 7.999999999949478 0.173242058928942 1.0014074714167471 0.09421348628593587 0.4575693385289623 0.06006185111317177 49.59816262484536 0.5427438439138867 0.14307281938033833 11.73678157027979 99999999.98836683 -7.999999999949478 -0.9071939851308113 TIPGTALVEMGDEYAVER ddPTM_BT-474_Trastuzumab_2h_R1 1 TIPGTALVEMGDEYAVER 18 0 C9IYN3;V9GYK2;Q8WVV9-4;Q8WVV9;B7WPG3;Q8WVV9-5 C9IYN3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 142.38 3.6033e-06 0.0 8509.0 10785.0 9220.7 10037.0 10769.0 10074.0 10233.0 11342.0 10031.0 9647.8 False True 8463.18848943877 11143.972205329828 10518.894412238855 11307.683170883201 12140.368317136203 9377.60809164522 9737.990696143834 12188.397633509025 7558.994458513564 9032.069144102854 0.9370154672658243 1.2338227296018722 1.1646162406879677 1.2519482513335412 1.344140320832552 1.0382568979521123 1.078157235156009 1.3494579635129316 0.836906177080024 1.0 13.140840815223008 1.2270637017897252 24.999985196913926 0.9184530014716887 1.1833266495430776 0.38456333205023097 0.12928436989216766 239.91115571647504 521669.12793194887 0.11668749654708468 0.030192941236355013 16.868004250918695 -1.2270637017897252 0.2648736480713889 TIPWLEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 TIPWLEDR 8 0 O43707;O43707-2;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 ;;; 164.72 0.00076407 685910000.0 914500.0 846060.0 749560.0 692202.0 729460.0 794590.0 725543.0 709347.0 720600.0 749430.0 False True 909576.4336105023 874220.5956459306 855091.5327076854 779834.7022269297 822352.40715184 739661.8635636673 690445.7132465827 762282.0751310802 543017.7855452966 701600.7357806972 1.2964302732641562 1.2460371705185755 1.2187722861439039 1.111507816991068 1.17210881518928 1.0542489849880474 0.9841006116937692 1.0864898456568188 0.773969806261763 1.0 19.420290735199227 3.094704919336287 0.4921736127845822 0.9322728390566909 1.317523894280245 0.7200842649418278 0.07685875081943655 0.6603682668629063 0.3184360796630414 0.0634742759704799 0.11974817272815393 1243.6693155874905 -3.094704919336287 0.3852510552235541 TIPWLEDRVPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIPWLEDRVPQK 12 1 O43707;O43707-2;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 ; 191.26 5.105e-06 3164700000.0 922770.0 935720.0 852200.0 794960.0 830830.0 998520.0 927160.0 916490.0 1084400.0 933140.0 False True 917801.9088493853 966864.8745453157 972182.352544812 895601.8544909158 936631.2757847778 929494.6626632506 882309.7287048491 984883.1376419215 817164.1502155429 873586.2062986529 1.0506140117963543 1.106776718283912 1.1128636710782176 1.0252014604094337 1.0721681146423363 1.0639987856510227 1.0099858747119617 1.127402345115806 0.9354132933003053 1.0 19.736590551091055 1.2305998032922063 24.999733095491255 0.9677066184982627 1.071691377146159 0.5397859820988072 0.03819441281846975 141.3282170955862 443802.34982001164 0.03308352356270613 0.008858169582493079 17.005907139644215 -1.2305998032922063 0.10398475864789625 TIQAPTQVPVVVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 TIQAPTQVPVVVSPR 15 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 TIQAPTQVPVVVS(1)PR;TIQAPTQVPVVVS(1)PR;TIQAPTQVPVVVS(1)PR 201.06 6.9292e-09 228710000.0 239062.0 238430.0 227251.0 254092.0 238677.0 240522.0 240262.0 235094.0 258846.0 250757.0 True False 237774.91675428508 246365.99841602135 259245.96549889815 286260.0211473606 269071.1012005863 223895.28026788696 228639.609170029 252637.9080631429 195056.87165869793 234753.47357613145 1.0128707070107474 1.049466892493601 1.1043328200842306 1.2194069667494203 1.1461858140017065 0.9537463998174956 0.9739562345427033 1.076183897152054 0.8309008965332316 1.0 17.840786979595876 2.735956529868013 24.98432405281245 0.9808753517061786 1.109444239204743 0.44621461869679824 0.07688775442659392 248.8970738833199 2387973.5974162533 0.02567097381413824 0.02522443861083921 544.4481542967951 -2.735956529868013 0.12856888749856443 TIQEVLEEQS(ph)EDEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 TIQEVLEEQSEDEDR 15 0 P18858;P18858-3;P18858-2;M0R0Q7 P18858 LIG1 DNA ligase 1;DNA ligase 1 TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR 382.38 2.6316999999999986e-99 4953670000.0 1891890.0 1871770.0 1909320.0 1803440.0 1724070.0 2266610.0 2007570.0 1848270.0 2132060.0 2107920.0 True False 1881704.2744487412 1934070.7329411427 2178135.6598930564 2031755.3190891314 1943620.095136505 2109924.585726027 1910456.169437847 1986197.292724889 1606642.3811403085 1973390.7409188931 0.953538615252923 0.9800748999362178 1.1037528527567861 1.029575783933729 0.9849139629749526 1.0691874356031275 0.9681084084484246 1.0064896178645455 0.8141531972488067 1.0 20.912245214271927 1.3746255750393974 10.490295436549733 0.9068923342544536 1.0135484692372292 0.3264226498067472 0.06030686498257471 0.36159110728362126 34.247834251442775 0.03812710602490086 0.013959171460033615 23.6933011795055 -1.3746255750393974 0.1066561349827756 TIQEVLEEQS(ph)EDEDREAK ddPTM_BT-474_Trastuzumab_2h_R1 4 TIQEVLEEQSEDEDREAK 18 1 P18858;P18858-3;P18858-2;M0R0Q7 P18858 LIG1 DNA ligase 1;DNA ligase 1 TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK 332.67 3.578199999999999e-75 3112310000.0 2304560.0 1748510.0 1586090.0 1475530.0 1516880.0 2501050.0 2371980.0 2068350.0 3258050.0 2505970.0 True False 2292152.5050206864 1806708.0983533866 1809397.6854585805 1662331.9467105023 1710045.6767478446 2328158.3003384233 2257238.2655564593 2222700.779868486 2455147.233133298 2346036.849131142 0.9770317571395302 0.7701107077761816 0.7712571463354012 0.7085702627928241 0.7289082766884768 0.992379254912667 0.9621495358832197 0.9474279062119875 1.046508384573143 1.0 21.161794243236738 2.7306108694159 24.854286385322517 0.9809549718714917 0.7843095863518126 0.6505638082769001 0.07251741318875464 359.30269394113503 1123330.511358682 0.02376854066972403 0.0227797625562225 537.7877054139561 -2.7306108694159 -0.19664538551967914 TIQEVLEEQS(ph)EDEDREAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TIQEVLEEQSEDEDREAKR 19 2 P18858;P18858-3;P18858-2;M0R0Q7 P18858 LIG1 DNA ligase 1;DNA ligase 1 TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR 202.15 2.9534e-16 1270050000.0 470800.0 476530.0 387560.0 430510.0 442150.0 603670.0 652960.0 563920.0 963180.0 633160.0 True False 468265.2651107977 492391.01298153214 442125.0792680909 485012.5218588158 498455.18167162896 561939.7137863276 621373.83025057 606002.5739277373 725817.1949507617 592751.1867244521 0.7899862127622813 0.8306875195012074 0.7458864514658802 0.8182396471258017 0.8409180661891145 0.9480195508196468 1.0482877878056842 1.0223557328944586 1.2244888094811477 1.0 19.17706712051148 2.4970755182549818 1.2321422680029983 1.0899651371395394 0.7907399047496612 0.8263401372830659 0.05866265336888377 0.17240660132346028 0.5296430847999338 0.030537149091646072 0.022519288471544042 314.1054835647387 -2.4970755182549818 -0.2992252323898782 TIQFVDWCPTGFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TIQFVDWCPTGFK 13 0 Q9BQE3;F5H5D3;A0A1W2PQM2 Q9BQE3 TUBA1C Tubulin alpha-1C chain 0 ; 198.32 2.9499e-07 221540000.0 652080.0 723430.0 652690.0 629260.0 691970.0 731730.0 765850.0 725820.0 952730.0 756590.0 False True 648569.2737328982 747508.9302273308 744583.0787168194 708924.251480518 780088.2778724805 681147.2274071436 728802.9096688901 779984.3740392808 717942.4574279358 708303.7784507126 0.9156654156942762 1.05535075905196 1.0512199727996105 1.0008759984750648 1.1013470513722001 0.9616597399734771 1.0289411575115632 1.1012003574869482 1.0136081145836975 1.0 19.434008712810314 4.742992053912172 24.63489390003044 1.0398272025265836 0.915665354312469 0.4121700429618198 0.04235756623018389 351.2284643601048 1952434.2038654268 0.00985597938108595 0.07900838944094621 55333.99849140787 -4.742992053912172 -0.12416184821411458 TIQGDEEDLR ddPTM_BT-474_Trastuzumab_2h_R1 4 TIQGDEEDLR 10 0 P54920;M0R0Y2;M0R213 P54920 NAPA Alpha-soluble NSF attachment protein 0 ;;; 228.64 4.644e-09 3590620000.0 2316310.0 2838050.0 2536220.0 2739610.0 2474040.0 2735230.0 2702800.0 2303760.0 2835230.0 2650140.0 False True 2303839.244326234 2932512.7786125466 2893297.73078057 3086444.3451014617 2789094.329216048 2546149.988138849 2572055.238301332 2475678.269456248 2136525.5566355707 2481005.796300999 0.9285908351206161 1.1819854604873201 1.166179351573571 1.2440294777638683 1.124178884779063 1.0262571703520302 1.0366986010819006 0.9978526745674299 0.8611529887680942 1.0 21.24249367508452 2.2230696734215982 1.252142039086954 0.949445403425061 1.138393153548586 0.42896679503205026 0.08615377764533941 0.43238824280240973 1.3076904513962495 0.05594189333460538 0.031541707834133466 167.135872718267 -2.2230696734215982 0.18894775012352505 TIS(ph)AQDTLAYATALLNEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TISAQDTLAYATALLNEK 18 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 T(0.022)IS(0.978)AQDTLAYATALLNEK;T(0.002)IS(0.998)AQDTLAYATALLNEK;T(0.025)IS(0.975)AQDTLAYATALLNEK;T(0.038)IS(0.962)AQDTLAYATALLNEK 332.36 6.350999999999997e-75 3665176000.0 924460.0 783577.0 691261.0 713787.0 676948.0 905854.0 865968.0 847158.0 1136510.0 871343.0 True False 919482.8100771612 809657.8867626999 788584.5402516773 804152.3610137707 763153.3152148495 843234.4451309493 824077.8195209899 910377.2317411592 856432.3389537678 815733.1437457269 1.1271857924701099 0.9925523965409444 0.9667187686289327 0.9858032215305376 0.9355428562220256 1.0337136005764587 1.0102296637561463 1.1160233450376191 1.0498927811381504 1.0 19.637737745309632 1.9067345602245935 8.97450507451601 1.067283570369241 1.0020310200370608 0.12461549468437971 0.05467565064674997 0.5556937148939319 49.64675012001041 0.022904843698826883 0.014466799783440095 80.67418008249489 -1.9067345602245935 -0.06525255033218014 TIS(ph)DGTISASK ddPTM_BT-474_Trastuzumab_2h_R1 6 TISDGTISASK 11 0 Q5T0N5-3;Q5T0N5-4;S4R347;Q5T0N5-2;Q5T0N5-5;Q5T0N5;A0A075B6Q2 Q5T0N5-3 FNBP1L Formin-binding protein 1-like 1 TIS(1)DGTISASK;TIS(1)DGTISASK;TIS(1)DGTISASK;TIS(0.997)DGT(0.002)ISASK;TIS(1)DGTISASK;TIS(1)DGTISASK 322.06 3.857e-46 16676550000.0 27572000.0 21424200.0 18775800.0 19213600.0 17129500.0 25447300.0 24094400.0 21940100.0 33965200.0 23038700.0 True False 27423555.41553719 22137291.54579761 21419269.437820803 21646039.78998522 19310840.290499065 23688188.047500823 22928861.822453633 23577381.671570394 25594931.570362348 21568350.441576585 1.2714720808075208 1.026378517252033 0.9930879737808598 1.0036020069601093 0.8953322760035559 1.0982846421967392 1.0630790650663036 1.0931471896951872 1.1866893409253894 1.0 24.36241250687776 -0.12141294877121694 8.070802188238455 1.0000000074232536 1.0621497562783144 0.0375022358384679 0.09944767478246726 0.0 0.0 0.09571183441288769 0.022559495717718956 0.7561136027249369 0.12141294877121694 0.06214974885506086 TIS(ph)EPDEQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TISEPDEQR 9 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 T(0.027)IS(0.973)EPDEQR 100.88 0.004575399999999999 1550400000.0 739800.0 744150.0 692730.0 735130.0 730450.0 799370.0 783380.0 753580.0 943440.0 804740.0 True False 735816.9989995065 768918.582901826 790260.3626829 828197.382625422 823468.4777836512 744111.4334145769 745484.9165977875 809815.966201704 710941.8534483131 753380.8042274236 0.9766866833753105 1.0206240703070952 1.048952081402307 1.0993077842947183 1.0930308725188467 0.9876963007806494 0.9895193936647574 1.0749092114606682 0.943668659274335 1.0 19.52301974902991 -0.2678691675688155 7.961830259152551 1.000000697806041 1.0312319000065189 0.01447755543361895 0.05006541801570826 0.0 0.0 0.048358195989581035 0.011398136103393623 0.5396731760875095 0.2678691675688155 0.031231202200477926 TIS(ph)NPEVVMK ddPTM_BT-474_Trastuzumab_2h_R1 4 TISNPEVVMK 10 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;E9PFY5;F8W9I4;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 T(0.001)IS(0.999)NPEVVMK;T(0.001)IS(0.999)NPEVVMK;TIS(1)NPEVVMK;TIS(1)NPEVVMK 163.33 6.8132e-06 873200000.0 1768550.0 1483770.0 1273240.0 1467260.0 1291170.0 1587950.0 1568610.0 1733680.0 2571080.0 1833940.0 True False 1759028.3233043763 1533156.3874920956 1452501.1247995254 1653014.9655584435 1455592.8461358275 1478178.7541322242 1492730.3416278865 1863056.0050486596 1937471.784706913 1716896.3790849745 1.0245395964093396 0.8929813156861547 0.8460039537002463 0.962792504949788 0.847804715454983 0.8609597947431309 0.8694353135181297 1.0851301381633651 1.128473336136625 1.0 20.71137153942055 1.7074483413239987 6.1463335986358985 1.079875501982623 0.8971356393880513 0.6221507994872446 0.060611754009014536 0.08195179286478511 7.348562724083539 0.030164208681377366 0.015381578473717052 50.98569472501037 -1.7074483413239987 -0.18273986259457164 TIS(ph)PSTSNNIPLMR ddPTM_BT-474_Trastuzumab_2h_R1 3 TISPSTSNNIPLMR 14 0 F8WBA3;Q15139;O94806;O94806-2 F8WBA3;O94806 PRKD1;PRKD3 Serine/threonine-protein kinase;Serine/threonine-protein kinase D1;Serine/threonine-protein kinase D3 1 T(0.002)IS(0.949)PS(0.049)TSNNIPLMR;T(0.001)IS(0.886)PS(0.113)TSNNIPLMR;T(0.021)IS(0.978)PS(0.001)TSNNIPLMR 226.62 2.4498e-12 480179000.0 298528.0 366657.0 339287.0 345664.0 316927.0 323386.0 374049.0 341834.0 375803.0 344983.0 True False 296920.758417579 378860.9565961628 387055.660464529 389425.0269582717 357285.77487649984 301031.08698876126 355954.8208640576 367343.3888778802 283191.3861522057 322965.8895851939 0.9193564026186594 1.1730680199161545 1.198441299673008 1.2057775744009238 1.1062647369212433 0.9320832220869983 1.1021437010615378 1.1374061494533778 0.8768461168327306 1.0 18.30102227550175 2.9837658446321518 23.886953234814218 1.0340258133428992 1.1358426022855486 0.20193114409691348 0.1042326959291297 722.8673319468551 1063630.1870130862 0.032020157788254754 0.03486790653934733 963.3095030699635 -2.9837658446321518 0.10181678894264934 TIS(ph)QSSSLK ddPTM_BT-474_Trastuzumab_2h_R1 6 TISQSSSLK 9 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 TIS(0.999)QS(0.001)SSLK;TIS(0.992)QS(0.008)SSLK;TIS(1)QSSSLK;TIS(0.999)QSSSLK;TIS(0.979)QS(0.021)SSLK;TIS(1)QSSSLK 232.19 2.7124e-08 6389550000.0 6826610.0 3490720.0 3730110.0 4193150.0 3093160.0 3876150.0 4114920.0 4333000.0 6409790.0 4449900.0 True False 6789856.290267677 3606906.505015204 4255277.065302659 4724002.360066643 3487055.5914043104 3608200.87397564 3915865.5990790776 4656350.462528172 4830183.141285583 4165903.5722489343 1.6298640072943935 0.8658161290728198 1.0214535673962988 1.133968244376915 0.8370466408856044 0.8661268345267478 0.9399798941973889 1.1177288148353548 1.1594562998197393 1.0 21.990198015172176 4.7458523149993495 24.98248325130496 0.9966945994711492 1.6298643077888482 0.7468702964559851 0.11112597082727861 459.30270386184725 1573603.0006319021 0.028125855260444917 0.291040339882263 55699.63060736974 -4.7458523149993495 0.6331697083176989 TISAQDT(ph)LAYATALLNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TISAQDTLAYATALLNEK 18 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 T(0.227)IS(0.227)AQDT(0.547)LAYATALLNEK 254.23 5.8127999999999996e-30 295210000.0 337500.0 293400.0 244040.0 260650.0 251450.0 328120.0 299640.0 276330.0 447530.0 357270.0 True False 335682.93749977474 303165.6416359546 278398.71076629445 293648.2632749531 283470.66703908413 305437.83671139873 285145.2684640415 296951.1477753085 337242.22809476365 334468.722725764 1.0036302789812914 0.9064095415717683 0.8323609708479612 0.8779543297258315 0.847525187793138 0.9132029871798563 0.852531938233987 0.8878293472564348 1.0082922712365954 1.0 18.351511780436002 1.24034255127781 24.63401049992821 1.0041461966954 0.8860102599166739 0.5008386454061492 0.04535722381837676 28.755983787511212 397591.5419141511 0.033994979293294564 0.010953409283851412 17.391720658889778 -1.24034255127781 -0.11813593677872603 TISINS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TISINSPK 8 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 TIS(0.151)INS(0.849)PK;TISINS(1)PK 135.16 0.00088704 797580000.0 2327400.0 1780710.0 1743480.0 1560480.0 1640890.0 2270900.0 2278700.0 2071050.0 3421100.0 2300500.0 True False 2314869.5369984508 1839979.8558880757 1988946.829400177 1758036.6080003812 1849847.6151829888 2113918.028123597 2168470.575520662 2225602.267578811 2578015.7453913605 2153680.1204428594 1.0748437128734076 0.8543422202874409 0.9235107899826793 0.8162942079062686 0.8589240331580004 0.9815376053565996 1.0068675263969848 1.0333949997742293 1.1970281570232655 1.0 21.038372556011854 2.1020836530937954 1.495624940561282 1.0857361928577665 0.9015324978039878 0.4491734798018555 0.08137862414892975 0.35211564123633315 1.4954524340486677 0.05018148152119181 0.02626093720213713 126.49799823843045 -2.1020836530937954 -0.18420369505377865 TITEYAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TITEYAR 7 0 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ;;; 143.02 0.0056997 858510000.0 747810.0 938650.0 942280.0 832630.0 760230.0 747290.0 854180.0 717960.0 1019870.0 791850.0 False True 743783.8740495016 969892.3978240923 1074944.8335554162 938040.8726285216 857040.7842637615 695631.6012314424 812860.0501155225 771537.8209270079 768536.7040578426 741313.4550631074 1.0033324890699358 1.3083431727831327 1.450054394957538 1.2653768338100204 1.1561111948127292 0.9383771419233499 1.0965132826927098 1.0407713709463529 1.036722993234242 1.0 19.499724171413032 3.02893280806635 3.6242400563403847 1.0324536874292178 1.2728398528783713 0.5006463490749501 0.10963220122795414 0.19146134646099372 5.379638293757634 0.03405444948202281 0.039943841500169774 1068.8894930364322 -3.02893280806635 0.24038616544915348 TITGFQTHTTPVLLAHGER ddPTM_BT-474_Trastuzumab_2h_R1 1 TITGFQTHTTPVLLAHGER 19 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 170.91 6.5272e-12 1178700000.0 298350.0 495490.0 535190.0 546370.0 491540.0 470530.0 520480.0 388570.0 566400.0 458750.0 False True 296743.7167498009 511982.08511997026 610540.1000451277 615540.3859794224 554134.7054141636 438003.36860848044 495302.39397331566 417567.0665184797 426818.309371158 429472.1822443657 0.6909497960940261 1.192119318286038 1.4216056948194518 1.4332485581782934 1.290269145066225 1.0198643514453762 1.1532816663117267 0.9722796581057441 0.9938206175325748 1.0 18.712205162639187 2.72927768035321 23.44840106808479 1.0321311175857362 1.22953061602478 0.16167992493018102 0.19861071360302987 516.8403341552441 1305517.5865048734 0.06704217381965315 0.064098045868346 536.1393461386583 -2.72927768035321 0.19739949843904392 TITLVKS(ph)PISVPGGSALISNLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TITLVKSPISVPGGSALISNLGK 23 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 TIT(0.003)LVKS(0.997)PISVPGGSALISNLGK;TITLVKS(0.989)PIS(0.01)VPGGSALISNLGK 187.38 1.4832999999999998e-17 680140000.0 609010.0 527050.0 570830.0 589680.0 542540.0 712830.0 701840.0 625160.0 985020.0 690390.0 True False 605731.1578273723 544592.5406415467 651197.9022566947 664333.427538747 611629.2531134803 663553.7399213283 667889.3179108358 671812.6136981578 742275.019591769 646328.7191273835 0.9371874402319263 0.8425937522578416 1.0075336016878302 1.0278568905860657 0.9463129751363185 1.0266505576561729 1.0333585653018196 1.03942868979299 1.1484481466240952 1.0 19.301908572539002 4.000473056339492 0.4956197643654315 1.0613131912556952 0.8435062580872577 0.4848153675662933 0.05458918813568583 1.920241301103174 0.6102257631942616 0.03792184725979032 0.2269328019242257 10010.898459263906 -4.000473056339492 -0.21780693316843758 TITVALADGGRPDNTGR ddPTM_BT-474_Trastuzumab_2h_R1 6 TITVALADGGRPDNTGR 17 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;; 233.03 3.86e-20 18320900000.0 3525580.0 4139040.0 3624630.0 4215860.0 3986680.0 3975740.0 4040390.0 3693160.0 4622650.0 4105750.0 False True 3506598.669008763 4276805.444297488 4134946.3981512585 4749587.443738139 4494360.067096339 3700906.451685291 3844940.89991132 3968762.352686486 3483459.8478364823 3843717.5198905803 0.9122935415682123 1.1126742332561514 1.0757675028806406 1.235675467606513 1.1692742881959444 0.9628455869958532 1.0003182804184774 1.0325322639212742 0.9062736347845995 1.0 21.87407088368045 2.727599199495788 24.65657319577471 0.9882065166019642 1.1078429066768833 0.3422945535935623 0.0830743278044621 739.8760433993764 1664271.633483774 0.027576227380264655 0.02623883980976163 534.0712496772034 -2.727599199495788 0.11963639007491911 TIVAVGS(ph)MEEAVILPFR ddPTM_BT-474_Trastuzumab_2h_R1 7 TIVAVGSMEEAVILPFR 17 0 Q9UPX8;Q9UPX8-3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;A0A590UJF3 Q9UPX8 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 TIVAVGS(1)MEEAVILPFR;TIVAVGS(1)MEEAVILPFR;TIVAVGS(1)MEEAVILPFR;TIVAVGS(1)MEEAVILPFR;TIVAVGS(1)MEEAVILPFR;TIVAVGS(1)MEEAVILPFR;TIVAVGS(1)MEEAVILPFR 269.59 2.3355e-28 321221000.0 293989.9 307140.0 277428.2 297127.0 307698.2 320048.4 265563.5 224033.8 333294.2 303436.3 True False 292407.09104374825 317362.9692299496 316487.6791108576 334743.2477348827 346881.74189988227 297924.20742089604 252717.17895391322 240752.3397765856 251158.31032346832 284070.73554911365 1.0293460552299423 1.1171969848160581 1.1141157447953287 1.178379909805979 1.2211104435990348 1.048767684024204 0.8896276431481284 0.8475084183212578 0.8841400358892124 1.0 18.11589068979816 2.358491317402015 3.607723022354757 0.8868819045413585 1.1331420486487613 0.7568859449904695 0.06011822404810574 0.10439465856284 2.6238351821690844 0.02256495080864876 0.018325635235134943 228.29232830602606 -2.358491317402015 0.24626014410740282 TIVCPMIDVIDHDDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TIVCPMIDVIDHDDFR 16 0 Q86SR1-3;Q86SR1-2;Q86SR1 Q86SR1-3 GALNT10 Polypeptide N-acetylgalactosaminyltransferase 10 0 174.17 3.9641e-09 14819000.0 17387.0 23697.0 22629.0 22200.0 20426.0 22164.0 23582.0 21498.0 26700.0 26699.0 False True 17293.390323877313 24485.740319860986 25814.966505206023 25010.517723782716 23027.13002561277 20631.854848443996 22441.24856801172 23102.289924632056 20120.142761670024 24995.046961836095 0.6918726878281876 0.9796236973368064 1.0328032807708596 1.000618953105799 0.9212677239923551 0.8254377309210871 0.8978278217390964 0.9242747157029146 0.8049651913993456 1.0 14.609354617174782 2.9904073487310843 24.54009400158995 0.8880825160262206 0.940566843863162 0.02132779514435712 0.10012555390160638 1194.1143728159989 3054817.6262316373 0.02953718345435979 0.03346849286039794 978.1542556080409 -2.9904073487310843 0.05248432783694146 TIVEELLADSEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TIVEELLADSEFR 13 0 Q5QJE6 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 ; 133.07 0.00025936 17168100.0 24587.0 29815.0 26290.0 28032.0 30556.0 28267.0 27267.0 26581.0 32928.0 28144.0 False True 24454.626323872508 30807.374251451896 29991.40348322355 31580.84832581429 34447.12548039871 26312.968823360672 25947.99103994469 28564.609195583078 24813.335612594423 26347.825824709344 0.9281458928174116 1.1692567901583868 1.1382876022771187 1.1986130672003057 1.3073991649092251 0.9986770444901005 0.9848247522423773 1.0841353432963263 0.9417602718978104 1.0 14.685396297718484 2.62763149117536 24.702115536045255 1.0119846860143018 1.1518919533566332 0.37582523492770126 0.09386722436936247 25.839761540033642 5727.600065888793 0.030607522559354634 0.028857049734879518 424.2594173293082 -2.62763149117536 0.1399072673423314 TIVEELLADSEFRR ddPTM_BT-474_Trastuzumab_2h_R1 2 TIVEELLADSEFRR 14 1 Q5QJE6 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 ; 198.33 3.5577e-08 69368000.0 48759.0 70150.0 58789.0 61578.0 64586.0 64550.0 63368.0 52706.0 77755.0 61299.0 False True 48496.48696163418 72484.90034342953 67065.98019685157 69373.76848626531 72810.64426878627 60087.810434355706 60302.64775073217 56639.18935564505 58593.32211362002 57386.84533928576 0.8450802039197398 1.2630926114666208 1.1686646965927519 1.2088792836774662 1.2687688936081265 1.0470659273758847 1.0508095957219366 0.9869716486553604 1.0210235772188079 1.0 15.808432448527551 2.549197790286995 7.631969944926243 1.0164850935069918 1.1614801705724085 0.25055072395868205 0.11251536760256901 0.38184375836379225 36.27751311160913 0.035459359252144905 0.03330226957742947 354.1585984444326 -2.549197790286995 0.1449950770654167 TIVLVPS(ph)PLGQQQDMIFEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TIVLVPSPLGQQQDMIFEAR 20 0 Q96R06;F5GZT2 Q96R06 SPAG5 Sperm-associated antigen 5 1 TIVLVPS(1)PLGQQQDMIFEAR;TIVLVPS(1)PLGQQQDMIFEAR 132.79 1.2506e-05 148987000.0 145079.0 162675.0 157212.0 146568.0 146217.0 153453.0 139566.0 109851.0 142368.0 136286.0 True False 144297.91078379218 168089.53903588606 179346.0830887994 165123.49377204446 164836.86825394197 142845.1552995071 132814.65938610476 118048.63943207546 107283.31403346214 127588.11079968506 1.1309667482289294 1.3174388897394111 1.4056645400947665 1.2941918548452405 1.29194536403739 1.1195804562368339 1.0409642289838859 0.9252322860819948 0.8408566704298828 1.0 16.96113437337125 2.3308856248158176 1.4564884946302867 0.9141081851283647 1.3009607403814232 0.8190954587288467 0.07540843801684131 0.1584168156568315 0.6718913244258717 0.041432357606490944 0.02691274563840647 214.2326326770534 -2.3308856248158176 0.3868525552530585 TIYENR ddPTM_BT-474_Trastuzumab_2h_R1 4 TIYENR 6 0 I3L0A0;Q13404;Q13404-7;Q13404-2;Q13404-1;G3V2F7;Q13404-6 I3L0A0 TMEM189-UBE2V1;UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 0 ;;; 118.69 0.050377 2858940000.0 2764150.0 3024340.0 2752230.0 2821760.0 2778640.0 2747280.0 2923560.0 2584270.0 3176510.0 2883350.0 False True 2749268.1235259385 3125003.3286478617 3139720.061187995 3178994.5266784327 3132483.333710401 2557367.000001496 2782136.233716239 2777121.3500571623 2393701.673553274 2699332.134439867 1.0184993867367986 1.1576950049151047 1.1631469951879456 1.1776966924961605 1.1604660626027097 0.9474073113763639 1.0306757728031697 1.0288179489381128 0.8867755260691498 1.0 21.364171070852493 2.743534109636593 24.999507063805886 0.9888382323888334 1.1406139559397768 0.6475750567669767 0.05752162071442562 275.59496613901797 1385293.0230814859 0.01795311479415454 0.01849578299043544 554.0310560177688 -2.743534109636593 0.15177572355094338 TIYFFGDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TIYFFGDK 8 0 O15305;H3BRM0;H3BV55 O15305 PMM2 Phosphomannomutase 2;Phosphomannomutase 0 112.84 0.0068939 153330000.0 120870.0 165050.0 136330.0 137750.0 133130.0 156050.0 162120.0 114470.0 207940.0 166590.0 False True 120219.24934991945 170543.58947516794 155524.07899839734 155189.13587617414 150083.31637666837 145262.63080218746 154277.63624145804 123012.33266688223 156695.97325324605 155958.08357512532 0.7708433355556694 1.0935219615789697 0.9972171716477978 0.9950695232890524 0.9623311144649513 0.9314209784593446 0.9892250065200512 0.7887525279036077 1.004731333324991 1.0 17.25079880644677 TIYLSS(ph)PDSAVGVQWPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TIYLSSPDSAVGVQWPR 17 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 T(0.008)IY(0.001)LS(0.452)S(0.538)PDSAVGVQWPR;TIYLS(0.003)S(0.997)PDSAVGVQWPR;TIYLS(0.008)S(0.991)PDS(0.002)AVGVQWPR 224.59 2.7997e-15 124668000.0 200898.0 261848.0 249716.0 256805.0 273341.0 257622.0 250702.0 228055.0 273543.0 233083.0 True False 199816.38748986588 270563.4523895417 284873.84222961817 289316.4866691898 308149.35613096145 239813.19751695707 238574.58648535615 245073.62213982525 206131.99293840863 218207.443387604 0.9157175593452607 1.2399368609481265 1.305518445232842 1.3258781743539065 1.4121853560402737 1.0990147439240858 1.0933384433709432 1.1231221920532684 0.9446606849806419 1.0 17.73534078945868 2.5070858846251833 21.2434982017506 1.0643868385083646 1.2490123366315624 0.3420586041321392 0.13025458089667344 133.98711758533787 94990.15894223299 0.0433585542378586 0.0407743666442517 321.4296124250879 -2.5070858846251833 0.18462549812319784 TKADVT(ph)PPPDGSTTHNLEVSPK ddPTM_BT-474_Trastuzumab_2h_R1 3 TKADVTPPPDGSTTHNLEVSPK 22 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 T(0.02)KADVT(0.979)PPPDGSTTHNLEVSPK;T(0.006)KADVT(0.904)PPPDGS(0.041)T(0.041)T(0.009)HNLEVSPK;T(0.031)KADVT(0.791)PPPDGS(0.059)T(0.059)T(0.059)HNLEVSPK 154.14 4.2122000000000005e-08 1154900000.0 896840.0 837570.0 777730.0 768300.0 837570.0 1078170.0 1126530.0 1023100.0 1482530.0 1123720.0 True False 892011.5130882916 865448.0111282421 887227.6238496557 865566.7012244264 944229.5748336662 1003638.6456391839 1072035.4401374885 1099448.917196534 1117180.3463842198 1052003.2275349065 0.8479170878386814 0.8226666881585454 0.8433696785594859 0.8227795110977509 0.8975538763756652 0.9540262038843244 1.0190419687680259 1.0451003270900643 1.0619552460899182 1.0 20.004707700134485 2.6354060480608936 1.3839237866137943 1.041898697982505 0.8323766360882604 0.9571135584825926 0.01879362097209624 0.06945977544281864 0.270100499845863 0.008201524804855474 0.00709534706748794 431.92271866046406 -2.6354060480608936 -0.2095220618942445 TKADVTPPPDGSTTHNLEVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TKADVTPPPDGSTTHNLEVSPK 22 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 TKADVTPPPDGS(0.017)T(0.12)T(0.12)HNLEVS(0.742)PK 190.79 9.9964e-18 492250000.0 502470.0 429630.0 413330.0 402290.0 403530.0 578430.0 627260.0 537370.0 859670.0 559440.0 True False 499764.7573496653 443929.97483318107 471523.271271236 453219.8727522767 454917.1535903022 538444.4955777595 596917.0374341034 577471.2781095692 647815.847487823 523736.06023931975 0.9542301844201814 0.8476215569925212 0.9003070574437336 0.865359304351087 0.8686000222753978 1.0280836788891694 1.139728735045175 1.1025998054166737 1.2369128205375153 1.0 18.99848041498391 2.536913866541749 2.913611627306379 1.1256426821656778 0.8843567391816098 0.7669612043394243 0.06054390447367369 0.1134635748908356 1.909976041383457 0.020381672867901317 0.018133204938387586 344.28164274545645 -2.536913866541749 -0.2412859429840679 TKDEPQR ddPTM_BT-474_Trastuzumab_2h_R1 5 TKDEPQR 7 1 A6NNI4;A0A2R8Y478;G8JLH6;P21926;A0A087WU13 A6NNI4 CD9 Tetraspanin;CD9 antigen 0 ;;;; 76.679 0.036576 799147000.0 1007031.0 1075209.0 1015035.0 902576.0 1019146.0 1086516.0 1065559.0 930019.0 1335738.0 1087191.0 False True 1001609.2569876612 1110996.681587433 1157943.1051576207 1016842.0290567981 1148928.2021483963 1011407.7063035545 1014013.8403393273 999421.740320792 1006563.267872194 1017805.5395889571 0.9840870559538939 1.0915608516299797 1.1376859921839868 0.9990533451679304 1.1288287963262544 0.9937140907211152 0.9962746329213722 0.9819378078099383 0.9889544011311794 1.0 19.957030517899465 2.6341019513666657 9.267759344557328 0.9903552535230282 1.0695020574412464 0.4062168394520378 0.045955622368019346 0.3533707959394113 28.954406040707994 0.014240766606855988 0.013418475674565247 430.6276892079039 -2.6341019513666657 0.07914680391821816 TKDGVVEITGK ddPTM_BT-474_Trastuzumab_2h_R1 6 TKDGVVEITGK 11 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 ;;;;; 164.68 2.0506e-05 31472060000.0 21394700.0 17624500.0 16153100.0 15055800.0 14871200.0 21953700.0 23455600.0 21103000.0 31273200.0 22739000.0 False True 21279513.312374633 18211120.82826476 18427316.074737884 16961862.73629404 16764959.171491854 20436092.39245103 22320963.01890659 22677813.018862724 23566338.89941043 21287777.552162662 0.9996117847545251 0.8554730893650597 0.8656289285992572 0.7967888002743083 0.7875391938125863 0.9599918235886907 1.0485342100279023 1.0652973502421275 1.1070361310223427 1.0 24.343522004239524 2.431481131472929 3.2404915293344683 1.060926030203889 0.8576440019857209 0.701054777757825 0.05955032163036088 0.13336647312413993 2.894411841732044 0.022407759646590367 0.018762031952282338 270.0729768819139 -2.431481131472929 -0.2032820282181681 TKDIEDVFYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKDIEDVFYK 10 1 J3KTL2;Q07955;Q07955-3;Q07955-2;J3QQV5;J3KSW7 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ; 155.48 1.1526e-05 11301900000.0 22508000.0 18487300.0 17640000.0 16254900.0 14909200.0 20405300.0 21604000.0 20242800.0 30919000.0 20581100.0 False True 22386819.428873908 19102638.604691133 20123558.67037138 18312768.673347574 16807798.24624819 18994729.6399095 20558931.984705474 21753420.526855588 23299426.743373618 19267596.577633776 1.1618895661777033 0.9914385807135837 1.0444249540563468 0.9504438500962499 0.8723349681173536 0.9858380397043902 1.067021094295212 1.1290157773028842 1.2092544417511872 1.0 24.19967328660903 2.023376786191076 3.251000200873228 1.1239765060667763 0.9948112846535794 0.26188257573124996 0.08382104109544417 0.3022772875220977 6.432917040512314 0.03930934626822619 0.02424966582083156 105.53020606976911 -2.023376786191076 -0.12916522141319697 TKDIVNGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKDIVNGLR 9 1 P47756-2;B1AK88;B1AK87;P47756 P47756-2 CAPZB F-actin-capping protein subunit beta 0 ; 94.804 0.0077286 1405780000.0 1499330.0 1834580.0 1806710.0 1744170.0 1615620.0 1961160.0 2079030.0 1710860.0 2897000.0 2088250.0 False True 1491257.7738712244 1895642.88627297 2061079.063795162 1964981.743166221 1821359.6304700135 1825589.6252740654 1978459.3762341354 1838533.0607710467 2183073.167811162 1954976.097159229 0.7628010265896179 0.9696501604431501 1.0542732807782718 1.0051180400729867 0.9316531455891592 0.9338168522504318 1.0120120543207816 0.9404376163179767 1.1166751199584384 1.0 20.8987195376135 4.730609139159427 4.492970673782898 0.9918305307587856 0.7489318329113606 0.6227622561532902 0.05460107751979525 0.12090638801929476 6.205910430635522 0.012878862147377643 0.092032952193122 53778.55628382536 -4.730609139159427 -0.24289869784742502 TKDLIIEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKDLIIEQR 9 1 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7BZC3 Q00341 HDLBP Vigilin 0 ; 82.417 0.016884 881840000.0 736500.0 761460.0 777510.0 725440.0 776510.0 886090.0 876980.0 716690.0 1089340.0 892460.0 False True 732534.765832843 786804.7357877103 886976.6497619293 817280.629618962 875393.9457646415 824836.6839314976 834557.1270110635 770173.0470780804 820886.7534081513 835502.4387265524 0.8767595782836378 0.9417144694238527 1.0616086903514397 0.9781905973424044 1.0477455303408696 0.9872343223661786 0.9988685709679918 0.921808257378584 0.9825067113619945 1.0 19.672284513774823 4.476471266116418 24.993133645155446 0.9922876654840924 0.8929982734660115 0.5091969890729986 0.03678959165628101 15.923319908271555 612317.9094072059 0.009641923910926642 0.026923350407886206 29955.133960791543 -4.476471266116418 -0.09928939201808096 TKDQILLLIDIEQSYINTNHEDFIGFANAQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKDQILLLIDIEQSYINTNHEDFIGFANAQQR 32 1 P50570-2;P50570-5;P50570;P50570-3;P50570-4 P50570-2 DNM2 Dynamin-2 0 153.99 9.1632e-11 335940000.0 103300.0 104840.0 93673.0 107020.0 96083.0 131700.0 127810.0 111690.0 142960.0 115110.0 False True 102743.84427770901 108329.53602288173 106861.34417968823 120568.72102699219 108318.60052144084 122595.88898845307 121627.34201838583 120024.87495032826 107729.42356585582 107763.58124937094 0.9534189852131401 1.0052518185359962 0.9916276254071875 1.118826227090481 1.0051503417540064 1.1376374798157398 1.1286497776733437 1.1137795678169233 0.9996830312883155 1.0 16.717510175457836 3.7901133762258232 8.474331868178739 1.0819465600134046 0.985250927959555 0.35605512488656477 0.05337459173489665 0.37037691373723586 57.20439822973751 0.013478315196624385 0.02430961329214824 6167.559901834918 -3.7901133762258232 -0.09669563205384957 TKDQPDGSSLS(ph)PAQS(ph)PSQSQPPAASSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKDQPDGSSLSPAQSPSQSQPPAASSLR 28 1 A0A494BZV2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;A0A1W2PPU9;Q6WCQ1 A0A494BZV2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 2 TKDQPDGS(0.003)S(0.015)LS(0.981)PAQS(1)PSQSQPPAASSLR;TKDQPDGS(0.007)S(0.031)LS(0.963)PAQS(0.998)PS(0.002)QSQPPAASSLR 221.6 1.3289999999999998e-34 616300000.0 268080.0 200918.0 221616.0 186395.0 210046.0 291720.0 236410.0 232860.0 339390.0 268480.0 True False 266636.68706648785 207605.43417250444 252817.6064791962 209992.58788848986 236794.11305981866 271554.08303501504 224973.94512609838 250237.19563912065 255751.88209300363 251345.37654270773 1.0608378428683047 0.8259767377786988 1.0058573981218164 0.8354742417663237 0.9421065002943606 1.0804021413494094 0.8950789078384801 0.9955910034279115 1.0175316753819308 1.0 17.93931162557371 2.9820789206599687 24.908920147874067 0.9909957866024883 0.9246158456967833 0.13837403097215206 0.07799513490405038 1345.7392849940306 1870476.7521683709 0.021897624851852447 0.023656229257242815 959.5749911135055 -2.9820789206599687 -0.06637994090570498 TKECS(ph)VEK ddPTM_BT-474_Trastuzumab_2h_R1 7 TKECSVEK 8 1 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 TKECS(1)VEK;T(0.004)KECS(0.996)VEK;TKECS(1)VEK;TKECS(1)VEK;TKECS(1)VEK;T(0.001)KECS(0.999)VEK;TKECS(1)VEK 96.059 0.0055775 9324400000.0 16732070.0 10911850.0 9574990.0 9068000.0 8760420.0 11126940.0 13633220.0 13661250.0 25332900.0 13821880.0 True False 16641986.394227743 11275044.330897378 10923065.364694959 10216007.870237015 9876007.559922585 10357760.827799365 12973729.064642034 14680721.845421882 19089946.238468587 12939755.784893181 1.286112865720141 0.8713490824966489 0.8441477216631357 0.7895054620863812 0.7632298262887279 0.8004603023413914 1.002625496208245 1.134543965857627 1.4752941675109192 1.0 23.62530705347022 1.7396736446877832 2.5809210935026523 1.2478142688377936 0.881805290113761 0.37671487534859727 0.17772900163132963 0.23916998598384526 3.3148827524078537 0.10841255946178115 0.04860113699109054 54.912807051285405 -1.7396736446877832 -0.3660089787240326 TKEDEKDDKPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKEDEKDDKPIR 12 3 P35998;C9JLS9 P35998 PSMC2 26S protease regulatory subunit 7 0 107.99 0.00076831 140730000.0 353900.0 196120.0 174930.0 152300.0 137050.0 300510.0 293520.0 254580.0 555740.0 283560.0 False True 351994.6417219863 202647.73564295628 199558.62348118302 171581.16438432905 154502.505141008 279736.45102445 279321.3162447123 273578.05233104626 418785.3235344755 265462.95803206984 1.3259651905161955 0.7633748118578373 0.7517381142760976 0.646346916557755 0.5820115404663839 1.053768303865038 1.0522044895279448 1.0305695919277598 1.5775659498372772 1.0 18.018151039828886 2.054543168959472 1.4150305115447848 1.2283407375601718 0.8100958676877934 0.313294230990252 0.2428902807474548 0.4991696958185708 1.8744606944762827 0.16267632764871845 0.0806183661537494 113.38175341968763 -2.054543168959472 -0.4182448698723784 TKEDLDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKEDLDSR 8 1 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 0 ; 92.838 0.010483 406810000.0 1334840.0 1280290.0 1155460.0 1121520.0 1097350.0 1409190.0 1447370.0 1313820.0 1895820.0 1487810.0 False True 1327653.3697546653 1322903.6786983523 1318138.7245616398 1263504.3170079642 1237091.017996972 1311776.012176448 1377355.183609663 1411863.9198427796 1428620.563686489 1392856.6920217758 0.953187343220166 0.9497773075118845 0.9463563136910514 0.9071315981358768 0.8881681978361284 0.9417882110128383 0.9888707083069603 1.0136462192628117 1.025676634121491 1.0 20.40961539916201 2.163740573605126 2.786634563590339 1.0128020087771992 0.928626180427799 0.7890134361362515 0.019610410665353125 0.13030368609175194 2.0422009781406847 0.00966466522215248 0.006536775536970835 145.79430958297397 -2.163740573605126 -0.08417582834940018 TKEELEAEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKEELEAEKR 10 2 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 ; 108.37 0.0012149 837800000.0 1419940.0 1126860.0 1045150.0 1028900.0 1043910.0 1416600.0 1422920.0 1315420.0 2204780.0 1459210.0 False True 1412295.2008101647 1164366.8538987448 1192298.0353933475 1159158.6345045075 1176845.7507606682 1318673.7763177103 1354087.9235177345 1413583.3199674159 1661441.5115383856 1366081.9685074654 1.0338290332264544 0.8523404017775685 0.8727865991057708 0.8485278784339454 0.8614752100464731 0.9652962316444659 0.9912201132390063 1.0347719628506984 1.2162092391524792 1.0 20.381612621042468 2.0006756443419564 1.4167542988386603 1.099527347547402 0.8907516954113358 0.5543648212201957 0.07313745075441945 0.2924725385546255 1.0934333042768896 0.04901245929776017 0.023225236195696542 100.15569393634743 -2.0006756443419564 -0.20877565213606608 TKEIEQVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKEIEQVYR 9 1 F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8;F8W6A0;Q8NEY8-6;F8WF16;B7Z8L1;Q8NEY8-3 F8W0Q9;Q8NEY8-6 PPHLN1 Periphilin-1 0 ; 105.46 0.002822 315820000.0 423010.0 541340.0 538730.0 518570.0 514880.0 516500.0 560170.0 462970.0 560620.0 528370.0 False True 420732.56116082886 559358.1746530593 614578.5012748957 584220.9088298199 580446.9160671453 480795.5707102202 533072.4370427922 497519.17231402517 422462.71292312554 494648.9742396847 0.8505679442831731 1.1308184263655614 1.2424538072065192 1.1810818161056826 1.1734521777980818 0.971993465566651 1.0776782421557984 1.0058024947464053 0.8540656807637875 1.0 18.916045559686108 1.9468128400876559 1.1617487210388688 0.9396253028399663 1.1178043044519388 0.2491017758115952 0.111460003491601 0.6612460654508863 1.6451164535172424 0.088520648437497 0.03961310451506482 88.47342500009222 -1.9468128400876559 0.17817900161197253 TKENILEEFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKENILEEFSK 11 1 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ; 166.45 1.8613e-05 2507900000.0 4126100.0 3800500.0 3798600.0 3230700.0 3215700.0 4598600.0 4861800.0 4432600.0 6500200.0 4321200.0 False True 4103885.5360528096 3926997.3450492383 4333409.861976908 3639706.2887488697 3625200.3340528277 4280709.605940013 4626616.160120403 4763383.120286734 4898312.808217516 4045417.3164345515 1.0144529513384763 0.9707273781361861 1.0711898236981345 0.8997109578689259 0.8961251832599352 1.0581626742313046 1.1436684520345344 1.1774763263447354 1.2108300392936144 1.0 21.947857104932684 2.4243666309464897 3.5583368108886924 1.1503700418013179 0.9719701947649718 0.533135941245656 0.07080567251119213 0.1649339414823302 4.3237221325768935 0.025461777016786053 0.02131520926325937 265.6847523406576 -2.4243666309464897 -0.17839984703634604 TKEPSTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKEPSTR 7 1 Q641Q2;F8W7U3;A0A0A0MR88;A0A096LPC5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A 0 ; 87.30799999999998 0.017727 57854000.0 83291.0 98203.0 75800.0 81885.0 93677.0 82682.0 106470.0 109363.0 128698.0 119678.0 False True 82842.57051050011 101471.62749003294 86471.981134589 92251.63260414185 105606.21068292005 76966.3879524925 101319.6393451026 117524.22239406155 96982.10236484683 112040.04757850917 0.7394014220892786 0.9056728346971589 0.7717952910899649 0.8233808767306967 0.9425755608405934 0.6869542598021505 0.9043162827479654 1.04894834422227 0.8656021169295659 1.0 16.7736549756115 2.0029150129466187 24.999130993115184 0.9768747347443526 0.8185014835076145 0.4381798175428343 0.0817746711123753 75.01248484571664 643300.9025457664 0.02880259949359783 0.021158637253028176 100.67346417505902 -2.0029150129466187 -0.15837325123673807 TKEQILEEFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKEQILEEFSK 11 1 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ; 191.06 1.8209e-06 5032400000.0 6491900.0 6342000.0 5740900.0 5367100.0 5440700.0 7498900.0 7519700.0 7286900.0 10934900.0 8100200.0 False True 6456948.331717894 6553089.636180039 6549168.819202669 6046574.309698832 6133540.8954446 6980518.693511847 7155943.382956387 7830685.480128457 8240140.4151530275 7583238.301069883 0.8514763845423287 0.8641545176360202 0.8636374803464475 0.7973604507253518 0.8088287156397614 0.9205194952830376 0.9436527112627845 1.0326308061588494 1.0866255401719955 1.0 22.854382629227963 2.1181149119230094 1.5273798380721026 1.0469841515409466 0.8394625591051641 0.8759932338991131 0.03260025813640091 0.1293748056590464 0.5760465371783028 0.020722737185621416 0.011065306718870495 131.25471458081248 -2.1181149119230094 -0.2075215924357825 TKETDS(ph)PSTPGKDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKETDSPSTPGKDQR 15 2 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 TKET(0.001)DS(0.333)PS(0.333)T(0.333)PGKDQR 73.464 0.019668 100510000.0 206430.0 134530.0 123890.0 125370.0 112290.0 221760.0 204420.0 172760.0 353240.0 209060.0 True False 205318.60381652918 139007.74972489759 141332.63512881586 141241.82914552445 126589.46590502569 206430.25316688945 194531.4236397656 185652.22845750448 266188.7351734952 195717.6118147291 1.0490553298335186 0.710246504829037 0.7221252794695076 0.721661315177028 0.6467964979301825 1.054735193490411 0.9939392875073174 0.9485719079448366 1.3600653140274146 1.0 17.578414058375646 2.724344628413182 24.754896640758485 1.051904125353244 0.761315996264848 0.5132541148344066 0.14605751974726694 597.5295748221469 1040501.6096715583 0.046723772285774984 0.04424879608002825 530.0839178415943 -2.724344628413182 -0.29058812908839593 TKETDSPS(ph)TPGKDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKETDSPSTPGKDQR 15 2 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 TKETDS(0.065)PS(0.467)T(0.467)PGKDQR 88.551 0.003517800000000001 180130000.0 303040.0 202490.0 168790.0 184580.0 159520.0 304610.0 284630.0 243100.0 476170.0 293870.0 True False 301408.46631090937 209229.75724221003 192554.16485101933 207947.8090745861 179833.92645088377 283553.02767481125 270861.35950781027 261241.35643678732 358824.2838511014 275114.9650052352 1.0955727773848063 0.7605175430505154 0.6999043648801699 0.7558578613512683 0.6536682817216493 1.030671042083863 0.9845388072679215 0.9495715961209747 1.3042703214791433 1.0 18.069675092286616 2.7156600960212023 22.894904337012356 1.0365496872104014 0.7840468159105072 0.4494785243396905 0.14345392602609894 264.3645339394951 264298.6959158091 0.04642120471240977 0.04380739576585536 519.5891768139403 -2.7156600960212023 -0.25250287129989424 TKEVYELLDSPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TKEVYELLDSPGK 13 1 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 146.0 3.8375e-05 897290000.0 2574500.0 2139500.0 1999600.0 1840500.0 1907200.0 2891900.0 2804800.0 2357600.0 3836100.0 2749400.0 False True 2560639.178053838 2210711.964144941 2281126.2991652275 2073507.1112892812 2150070.6151399515 2691989.759800359 2669121.1086234967 2533536.0836502276 2890744.5561064603 2573930.938120234 0.9948360074975039 0.8588855013178578 0.8862422318258296 0.8055799324606522 0.835325681546906 1.0458671287297028 1.0369824104809826 0.9843061622704193 1.1230855161240645 1.0 21.29554191403737 2.7334893173653776 24.963890779565734 1.0326090435376025 0.8718508723080137 0.6641535782263046 0.057449021052727346 257.54366103589376 1267776.2081775018 0.018363534184026368 0.01781429002802574 541.3639314247412 -2.7334893173653776 -0.1607581712295888 TKEYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_BT-474_Trastuzumab_2h_R1 3 TKEYVSNDAAQSDDEEKLQSQPTDTDGGR 29 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR 373.95 6.211399999999997e-137 2575650000.0 1450660.0 966590.0 956500.0 903700.0 1002740.0 1489840.0 1527420.0 1429620.0 2357800.0 1579120.0 True False 1442849.807743479 998762.3638340067 1091166.88595296 1018108.3273415517 1130432.995294376 1386850.867506127 1453532.8592889674 1536305.503863267 1776751.7829013357 1478339.2096473502 0.9759937356242232 0.675597560638506 0.7381031896010198 0.6886838424480508 0.7646641500931539 0.938114107003191 0.9832201228266818 1.0392104151994617 1.2018566316218928 1.0 20.495545907771234 2.3860486750288064 1.4807555803058832 1.079529083235968 0.7546058953069685 0.681821450734731 0.09340218384492804 0.22185363258721913 0.9806725308697294 0.04740111772331284 0.03271377250393417 243.2476621873959 -2.3860486750288064 -0.32492318792899955 TKFAS(ph)DDEHDEHDENGATGPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 T(0.286)KFAS(0.714)DDEHDEHDENGATGPVK;T(0.187)KFAS(0.813)DDEHDEHDENGATGPVK 241.22 7.082099999999998e-31 4124610000.0 1738690.0 1299400.0 1181440.0 1088670.0 1160780.0 1783520.0 1683640.0 847340.0 2607600.0 1521810.0 True False 1729329.0862266172 1342649.7434961125 1347776.4827394318 1226495.5103761507 1308598.4525179092 1660229.460354485 1602195.9010706164 910572.813505337 1964991.920049842 1424686.782912909 1.2138310728838502 0.9424174910578844 0.9460159937637473 0.8608878281782489 0.9185165948141626 1.1653294466310598 1.1245951884208352 0.6391389492949344 1.3792448583205266 1.0 20.442213347263216 1.2137395711063288 24.99963249473185 1.1896219744859353 0.9659674986536193 0.1838265290991843 0.1786955307799777 425.21717928595115 428265.33748731634 0.16889588779184925 0.042297018954249456 16.35835282776715 -1.2137395711063288 -0.223654475832316 TKFAS(ph)DDEHDEHDENGATGPVKR ddPTM_BT-474_Trastuzumab_2h_R1 3 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 T(0.022)KFAS(0.978)DDEHDEHDENGATGPVKR;TKFAS(1)DDEHDEHDENGATGPVKR;T(0.001)KFAS(0.999)DDEHDEHDENGATGPVKR 247.62 5.010199999999998e-38 3602520000.0 1286900.0 1493600.0 1273120.0 1670240.0 1503380.0 1946160.0 2228480.0 951870.0 3737290.0 1760550.0 True False 1279971.4733880323 1543313.5730997326 1452364.229842586 1881692.212746434 1694826.5317686135 1811626.5399678624 2120679.908779695 1022903.3728979209 2816284.956620295 1648190.1917173143 0.7765920946625581 0.9363686186554073 0.8811872787140606 1.1416717695582357 1.0282954845172978 1.0991610974703456 1.286671841294041 0.62062216972188 1.708713576123091 1.0 20.652451300204127 3.750914946480933 21.486889844509168 1.0870933433134606 0.8718810517109382 0.1652117270873985 0.25910051541318346 245.47384766556127 426923.2231770123 0.064232090172086 0.11430777786569757 5635.27282164495 -3.750914946480933 -0.21521229160252242 TKFEECR ddPTM_BT-474_Trastuzumab_2h_R1 5 TKFEECR 7 1 P43487;F6WQW2;P43487-2;C9JXG8;C9JGV6 P43487 RANBP1 Ran-specific GTPase-activating protein 0 ;;;; 118.26 0.0046015 5203400000.0 5103240.0 4868650.0 4527340.0 4187050.0 3470900.0 4709320.0 5156840.0 4375830.0 7459850.0 4889690.0 False True 5075764.722863267 5030700.072088925 5164750.119655276 4717130.100692088 3912898.5413639187 4383775.792946862 4907383.948158153 4702376.654614512 5621469.924368691 4577625.797925773 1.1088203682273925 1.0989758215641938 1.128259571150517 1.0304752526581633 0.8547877686151066 0.9576527192181701 1.0720369389699353 1.027252305495409 1.228031772915101 1.0 22.126168102654248 3.691454464869564 6.80086062161268 1.0189157933763913 1.1106595901555014 0.1696134454438858 0.08844086111394225 0.4115914633829655 48.825418562765954 0.02477649146985597 0.038921790539561914 4914.21852647737 -3.691454464869564 0.09174379677911015 TKFENLCK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKFENLCK 8 1 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 ; 121.73 0.0012956 3425800000.0 5120900.0 4997900.0 5176000.0 4075000.0 3399700.0 5205100.0 6042300.0 5017900.0 10692800.0 5969600.0 False True 5093329.643385472 5164252.080205655 5904735.809401489 4590894.582180832 3832631.6433993825 4845283.688487448 5750010.865172467 5392361.178379904 8057702.716179217 5588615.017168313 0.911376007783446 0.9240665288879251 1.0565651402471001 0.8214726847488208 0.6857927467942375 0.8669918528298443 1.0288793999064783 0.9648832782030047 1.4418067251771374 1.0 22.414059364838028 1.4144935246889356 5.190720165360957 1.2242459311866616 0.9020709453031174 0.4477573578889774 0.1397162432735322 0.17569285713162847 7.93483649889341 0.09557277588063066 0.035187914925340305 25.971290180372442 -1.4144935246889356 -0.3221749858835442 TKGDFILVGDLMR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKGDFILVGDLMR 13 1 Q16531;F5GY55;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 ; 174.62 1.7937e-05 641140000.0 894180.0 1022970.0 1068180.0 962670.0 803560.0 1008610.0 1097530.0 909300.0 1556970.0 1137190.0 False True 889365.8342327384 1057018.9380515765 1218570.4592129977 1084543.923295222 905888.6029267306 938887.1647125555 1044438.2809282452 977156.5833318415 1173275.6058291146 1064613.5606026577 0.8353884142986917 0.9928663105260636 1.144612941547718 1.0187207484763598 0.8509083825814919 0.881904194589696 0.981049199051164 0.9178509644181984 1.1020671248682437 1.0 20.02189841726381 1.2431460594682606 24.99957948152609 1.0510335669385364 0.9564770706904154 0.1618146701376333 0.08903174463415511 210.44681818420503 1147395.5403801755 0.06785161031057485 0.022893513660646448 17.504352861552302 -1.2431460594682606 -0.09455649624812101 TKGGQQVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TKGGQQVDR 9 1 Q8TE77;Q8TE77-3;C9JUG3;Q8TE77-4 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 0 ; 122.51 0.0005323999999999999 205640000.0 404420.0 394780.0 396610.0 385560.0 383690.0 362780.0 462630.0 427850.0 576420.0 473220.0 False True 402242.6476552856 407920.01365045045 452449.24060408125 434371.8564676426 432550.6471911959 337701.87249226286 440250.81948177685 459778.33957827877 434369.01463227905 443018.69445597526 0.9079586317440567 0.9207738155415184 1.0212870162503789 0.9804820020090779 0.9763710935999348 0.7622745421769596 0.9937522388810311 1.0378305595949722 0.9804755873015292 1.0 18.757008053194244 2.021552199318665 24.999922892195233 1.0116770524491152 0.9317659313795015 0.2348911501589851 0.06601949464358982 343.806564535621 398803.75262027927 0.025697273164290386 0.018977368421255306 105.08777558172365 -2.021552199318665 -0.07991112106961373 TKHEIHHTGER ddPTM_BT-474_Trastuzumab_2h_R1 2 TKHEIHHTGER 11 1 Q86T24 Q86T24 ZBTB33 Transcriptional regulator Kaiso 0 ; 73.848 0.027379 28383300.0 37469.0 51493.0 46693.0 46960.0 47089.0 52965.0 49542.0 9796.1 58620.0 35813.0 False True 37267.27106719725 53206.913376824166 53266.968537168425 52905.1311850827 53085.50503163027 49303.65421619904 47145.46419118122 10527.134725587872 44173.88646775646 33527.383678948136 1.1115472481855897 1.5869688457149975 1.5887600728778246 1.5779677797615286 1.5833476760360128 1.4705488113334901 1.406177846820296 0.3139861680348731 1.3175464835179869 1.0 15.033052285864047 1.9082932902340466 8.897143365020948 0.8119543335287258 1.4987806909091026 0.5079723359131797 0.26816061489011767 0.24468555525372018 22.030080018280273 0.10704888829337 0.06757882535421829 80.96424869913518 -1.9082932902340466 0.6868263573803768 TKIDCDNLEQYFIQQGGGPDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKIDCDNLEQYFIQQGGGPDKK 22 2 F1T0B3;A0A087X2G1;Q92499;Q92499-3;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ; 217.11 7.2487e-26 773740000.0 542500.0 447680.0 424440.0 399520.0 396940.0 586360.0 548050.0 544570.0 942540.0 563140.0 False True 539579.2402774164 462580.7581717247 484197.46270138444 450099.1910362919 447487.95615229284 545826.3133429717 521538.7277456888 585208.5786704284 710263.6463889314 527199.92307159 1.0234812576103987 0.877429487236305 0.918432347031344 0.8537542805657269 0.8488012546457203 1.0353307909509166 0.9892617675417748 1.1100316086179725 1.3472377656103767 1.0 19.00799063426638 1.939175438460948 1.5164850185511622 1.175953081947448 0.9094697442241211 0.5224308386719357 0.09785820353335002 0.2861310308719552 1.225198381712346 0.06512230731340315 0.029759792815962652 86.93115271764563 -1.939175438460948 -0.2664833377233269 TKIDWNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKIDWNK 7 1 P47755;P52907 P47755;P52907 CAPZA2;CAPZA1 F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1 0 ; 112.84 0.005712399999999999 3999400000.0 9763100.0 9677200.0 9267200.0 7576100.0 6053900.0 9661100.0 11200500.0 8461000.0 17186600.0 9835800.0 False True 9710536.554382388 9999299.752009071 10571941.208053615 8535233.483204966 6824828.280723449 8993250.89678318 10658689.024934923 9092402.784087453 12951192.71864112 9208070.823147966 1.0545679698695718 1.0859277631609927 1.1481168434844187 0.9269296085069667 0.7411789517915809 0.9766704741426668 1.1575376894517666 0.9874384068843457 1.4065044641146116 1.0 23.134467499211716 -0.12125224856072706 7.836138824948967 1.0000000043907558 1.0427317418564535 0.005497748799443647 0.16443499462613492 0.0 0.0 0.15905045352977626 0.03748855141390023 0.7563934361177893 0.12125224856072706 0.042731737465697694 TKKDDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 3 TKKDDSHSAEDSEDEKEDHK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 TKKDDS(0.023)HS(0.977)AEDS(1)EDEKEDHK;TKKDDS(0.022)HS(0.978)AEDS(1)EDEKEDHK;TKKDDS(0.064)HS(0.936)AEDS(1)EDEKEDHK 152.14 3.2508e-08 439874000.0 482715.0 251299.0 161260.0 182930.0 189925.0 382023.0 416040.0 328508.0 1062430.0 306966.0 True False 480116.11607467866 259663.33530154653 183964.00630295303 206088.91924376457 214110.82297632963 355614.6491954119 395914.5557728606 353022.9350898235 800608.3623326259 287375.16707318573 1.67069451742992 0.9035691495062903 0.6401527598106728 0.7171424077546685 0.7450568020785251 1.2374578249652575 1.3776923030793164 1.2284392513286275 2.7859343953986646 1.0 18.13257587412959 1.8452871956945316 1.4910577808343632 1.7949016648352645 0.9365170950325141 0.2784485326492895 0.5126703905725319 0.47505964101133663 1.9893792923925764 0.3662020209665452 0.1549845408395974 70.03049493398309 -1.8452871956945316 -0.8583845698027504 TKKDDSHSAEDS(ph)EDEKEDHK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKKDDSHSAEDSEDEKEDHK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 TKKDDS(0.001)HS(0.018)AEDS(0.981)EDEKEDHK;TKKDDSHSAEDS(1)EDEKEDHK 206.47 3.1023000000000004e-22 205473000.0 235886.0 157967.0 117172.0 130318.0 131821.0 226370.0 262601.0 215734.0 710880.0 249074.0 True False 234616.01598539815 163224.83610193187 133668.79912271845 146816.24543819448 148607.62298571935 210721.57471766204 249897.98639676222 231833.16655505507 535693.1493039699 233177.8840770202 1.0061675313423075 0.7000013605407691 0.5732481862583794 0.629631948241284 0.6373143987215927 0.9036945143908215 1.0717053522718272 0.9942330829217021 2.297358308333508 1.0 17.83107143602214 1.4341402224878657 4.907504557181031 1.6659603806535288 0.7882890788243996 0.5037431943029592 0.33303456239445023 0.1415459939161055 6.279999711890069 0.21331452936671697 0.08015908003801638 27.17316478629322 -1.4341402224878657 -0.8776713018291292 TKLDDLALLEDLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKLDDLALLEDLEK 14 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 ; 136.48 2.4492e-05 552110000.0 1639110.0 1282220.0 1168170.0 1046090.0 1117310.0 1554900.0 1529290.0 1469680.0 2501800.0 1523210.0 False True 1630285.2138822405 1324897.9175816427 1332638.1820843376 1178524.8867419763 1259592.8056847856 1447413.4228408914 1455312.400244874 1579354.984483825 1885264.9124024732 1425997.4337143083 1.1432595706962965 0.9291025960198744 0.9345305612599898 0.8264565271146821 0.883306502455557 1.0150182522213946 1.0205575170315762 1.1075440580352693 1.3220675352072035 1.0 20.443539954772895 1.8934474158487162 1.782213945707554 1.1659041783931587 0.9419417463360023 0.38138725690636366 0.10732615173201089 0.3343338351891663 1.985759832818674 0.06996136536760889 0.032066573390030204 78.2433462692003 -1.8934474158487162 -0.2239624320571565 TKMIMVEER ddPTM_BT-474_Trastuzumab_2h_R1 1 TKMIMVEER 9 1 Q5JYW6;H0Y5P0;H0YE38;B1AJZ9-4;B1AJZ9;B1AJZ9-3 Q5JYW6 FHAD1 Forkhead-associated domain-containing protein 1 0 75.378 0.051686 412050000.0 28146.0 87074.0 76619.0 95292.0 78325.0 44887.0 60740.0 60136.0 28366.0 56549.0 False True 27994.465063314576 89972.20545265544 87406.28921571335 107355.95742949116 88299.2244813531 41784.067342632436 57801.77415066712 64623.653684420584 21375.579384926295 52939.99440596535 0.5287961469856166 1.6995129384168814 1.6510445495223605 2.0278800297227484 1.667911481142949 0.7892722281422105 1.0918356678963672 1.2206962696078167 0.4037699592676509 1.0 15.692070421936851 2.7420195744336273 24.986518433926793 0.9559009127469167 1.5613262909580057 0.34429696513456154 0.4177857798941256 360.6106351397267 2604953.4057297045 0.13107502407026603 0.13404600890706717 552.1023229649459 -2.7420195744336273 0.605425378211089 TKNETDEDGWTTVR ddPTM_BT-474_Trastuzumab_2h_R1 3 TKNETDEDGWTTVR 14 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ;; 156.49 5.0678e-06 1729900000.0 757310.0 729560.0 666580.0 654420.0 687970.0 849170.0 890270.0 774570.0 1135130.0 893060.0 False True 753232.7271050517 753842.9635716666 760428.6699827752 737269.5049008059 775578.9015823376 790468.8766311662 847204.2389383334 832372.3465867649 855392.4214627157 836064.1462128664 0.9009269570008264 0.9016568489228507 0.9095338837663373 0.8818336586258695 0.9276547799537752 0.9454643883627424 1.0133244473835272 0.9955843105546096 1.0231181726155834 1.0 19.6732541103709 2.509877724220126 1.7089126538076336 1.0089062333347625 0.9003601063915327 0.9379946613189003 0.012570220307721413 0.07487378516187734 0.44231642023328743 0.005143186107485415 0.004155140783699231 323.50256183450585 -2.509877724220126 -0.10854612694322974 TKPADMVIEAYGHGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKPADMVIEAYGHGQR 16 1 E5RG77;O94903;E5RFZ4 E5RG77 PROSC Proline synthase co-transcribed bacterial homolog protein 0 105.39 0.00077347 463440000.0 594540.0 600460.0 572640.0 533360.0 619930.0 758910.0 757130.0 690350.0 969560.0 797120.0 False True 591339.0626996036 620445.9481142644 653262.7345238922 600883.3213133675 698874.4108870131 706448.3379819813 720504.7293825254 741867.4225262696 730624.9294383822 746247.1191512331 0.7924172134455689 0.831421565579975 0.8753973285242299 0.8052068891023665 0.9365187388353327 0.9466680940564057 0.9655042021495687 0.9941310371423009 0.9790656616127117 1.0 19.50929393137472 2.991516009266561 1.0778068562542078 0.9891721469031199 0.8201118408829775 0.8761984499105165 0.026607850452953018 0.15573442561481352 0.388697358467726 0.011754366672210644 0.014255463995953068 980.6544632255376 -2.991516009266561 -0.16906030602014244 TKPFPWGDGNHTLFHNPHVNPLPTGYEDE ddPTM_BT-474_Trastuzumab_2h_R1 1 TKPFPWGDGNHTLFHNPHVNPLPTGYEDE 29 1 P12074 P12074 COX6A1 Cytochrome c oxidase subunit 6A1, mitochondrial 0 164.05 3.4308e-12 747550000.0 238120.0 250110.0 253440.0 216650.0 232330.0 482650.0 241380.0 59054.0 300590.0 226060.0 False True 236837.9883776188 258434.76015531228 289122.1490600293 244077.86778637493 261915.84837220307 449285.5415358908 229703.52723885444 63460.90935013594 226513.62219964023 211632.65726029687 1.1190994407177939 1.2211478299280216 1.3661509183075866 1.1533090920186868 1.237596558881083 2.122949961277921 1.0853879085226972 0.2998635001406348 1.0703150691957743 1.0 17.69120274287245 1.9949854979845851 24.99961358343672 0.7073562957038201 1.3686376448763424 0.3749094339192097 0.33166002993777727 192.8026955139931 961212.4066671956 0.12649092875313991 0.09084518617619698 98.85200853200438 -1.9949854979845851 0.6612813491725223 TKPIVKPQT(ph)SPEYGQGINPISR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKPIVKPQTSPEYGQGINPISR 22 2 O95793-2;O95793-3;O95793;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 1 TKPIVKPQT(0.585)S(0.414)PEY(0.001)GQGINPISR 89.29700000000003 0.004102399999999999 845430000.0 176280.0 162750.0 145630.0 128110.0 148890.0 186540.0 183350.0 179030.0 254280.0 188580.0 True False 175330.92806654918 168167.03536554734 166133.43816134834 144328.7128645858 167850.25895982978 173644.92886792734 174480.66003498225 192390.12769591948 191616.10117743295 176544.66294853928 0.993125054806421 0.9525466958724551 0.9410278135101389 0.8175195469185945 0.9507523827483597 0.9835750680185831 0.988308890911312 1.089753292355255 1.0853689824273351 1.0 17.429673682653792 2.1871880042179512 1.6927761180360206 1.0653378298818217 0.9286482725547424 0.531091060422517 0.05000688429780285 0.2738436719268527 1.5397529548044282 0.028588219263838373 0.016820805652920396 153.88206449925235 -2.1871880042179512 -0.13668955732707933 TKPIVKPQTS(ph)PEYGQGINPISR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKPIVKPQTSPEYGQGINPISR 22 2 O95793-2;O95793-3;O95793;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 1 TKPIVKPQT(0.15)S(0.85)PEYGQGINPISR 171.31 4.8605e-12 945820000.0 456220.0 353180.0 378330.0 369960.0 396870.0 538520.0 478530.0 473110.0 682480.0 530740.0 True False 453763.76221080654 364935.3827981814 431595.57549668907 416796.8980671462 447409.042067215 501293.3799397251 455381.6757378777 508415.8706039016 514291.94876346685 496867.7188106249 0.9132486274153646 0.73447191069636 0.8686327550717508 0.83884881687394 0.9004590661236729 1.0089071214763037 0.9165048532996786 1.0232419039436091 1.035068146496921 1.0 18.922502288362132 2.930034876698136 1.1911559210834801 1.004258125047396 0.8239058766830158 0.6702839257062777 0.05203911155428295 0.25339606371764645 0.7571035112938304 0.021604170162072046 0.024409891252523127 851.2063929193826 -2.930034876698136 -0.18035224836438024 TKPIVKPQTSPEYGQGINPISR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKPIVKPQTSPEYGQGINPISR 22 2 O95793-2;O95793-3;O95793;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 98.21 0.00067192 1100300000.0 329030.0 283120.0 269990.0 232940.0 204030.0 331050.0 285950.0 308950.0 403070.0 273140.0 False True 327258.53903866967 292543.4780503459 308002.2452048506 262430.18011612387 230012.0111194447 308165.29270787654 272117.50606492057 332005.41781631194 303738.7993612861 255707.9713530812 1.2798135987195782 1.1440530246372425 1.2045077968240636 1.0262886163754381 0.8995105232830011 1.2051454285027443 1.0641729494196375 1.2983772702098493 1.187834691871549 1.0 17.964137609800517 4.941579869505578 1.4955163917251033 1.1201826356141646 1.405990022381864 0.1692757691534844 0.1118664363150587 4.062725340393376 5.758559245177289 0.03200748191461426 1.977042683395635 87413.77372748897 -4.941579869505578 0.28580738676769935 TKPIWTR ddPTM_BT-474_Trastuzumab_2h_R1 3 TKPIWTR 7 1 P08238;P07900;P07900-2;Q58FG0;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA5P;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 ;; 106.68 0.0069741 37732720000.0 8662550.0 9201190.0 8404600.0 8257670.0 8417490.0 9233770.0 10083140.0 9225500.0 12266590.0 9299120.0 False True 8615911.793299777 9507446.046913197 9587894.625907227 9303090.175322019 9489407.45712794 8595461.213856548 9595379.996864626 9913953.656139778 9243653.2583848 8705642.200222837 0.989692844610503 1.0921016311318006 1.1013426011996919 1.06862767402546 1.0900295737958356 0.9873437267656752 1.1022024310416771 1.1387963608113842 1.0618002722588566 1.0 23.05351929625314 TKPLT(ph)PSIGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TKPLTPSIGAK 11 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;A0A2R8YCQ1;A0A2R8Y7Y0 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 TKPLT(0.879)PS(0.121)IGAK 75.764 0.06013300000000001 1020400000.0 1948500.0 1481700.0 1425000.0 1266200.0 1402400.0 2087600.0 1948800.0 1908900.0 2934300.0 1948600.0 True False 1938009.4924987005 1531017.4887934362 1625627.6136779583 1426500.7901735897 1580987.327323968 1943289.1256818129 1854529.0988610461 2051351.811197791 2211181.082605557 1824238.679719607 1.0623661881769662 0.8392638012854545 0.8911266007844016 0.7819704767979422 0.8666559616897128 1.065260345198088 1.0166044166688182 1.1244974870903912 1.2121117193641704 1.0 20.798863070493685 2.6796240326836385 4.107013497541931 1.092166719209079 0.8792925679863066 0.5596515016529313 0.086510601586222 0.16323252648229722 5.647151547920683 0.028733751545383452 0.027472774089029716 478.21592311128836 -2.6796240326836385 -0.2128741512227723 TKPPRPDS(ph)PATTPNISVK ddPTM_BT-474_Trastuzumab_2h_R1 4 TKPPRPDSPATTPNISVK 18 2 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 T(0.489)KPPRPDS(0.511)PATTPNISVK;TKPPRPDS(1)PATTPNISVK;T(0.001)KPPRPDS(0.999)PATTPNISVK;T(0.133)KPPRPDS(0.384)PAT(0.384)T(0.098)PNISVK 205.13 7.8479e-16 8685600000.0 5526420.0 4720330.0 4450540.0 3725720.0 4428990.0 6007510.0 5487700.0 5572160.0 7825100.0 5670710.0 True False 5496666.368762988 4877443.330550263 5077137.347212845 4197395.769993326 4992995.623819574 5592224.973857416 5222238.985950211 5987982.8740551565 5896708.955967953 5308800.43286092 1.0353876432685616 0.9187467851229437 0.9563624422168698 0.7906486263849521 0.940512962761503 1.0533876804338185 0.9836947257661255 1.1279351992570992 1.110742253460488 1.0 22.339954478362873 2.746398121533597 4.006000915386256 1.0639370266025778 0.9201951769057936 0.4528357911285328 0.06946567373164883 0.1923737211934542 7.307290926308222 0.023038859563753147 0.02319655638975253 557.6967601486363 -2.746398121533597 -0.14374184969678427 TKPSDEEMLFIYGHYK ddPTM_BT-474_Trastuzumab_2h_R1 4 TKPSDEEMLFIYGHYK 16 1 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5;P07108-6 P07108 DBI Acyl-CoA-binding protein 0 ;;; 204.13 1.5619e-11 9239440000.0 11290800.0 8411370.0 7526770.0 6491060.0 6065380.0 9588900.0 8742580.0 8609560.0 12341860.0 9193440.0 False True 11230011.5873258 8691337.365669457 8586473.792142348 7312827.530456621 6837770.190676153 8926041.91284266 8319668.005501146 9252049.085659835 9300373.975451114 8606706.788300019 1.3047977424526545 1.0098330963806603 0.9976491593526603 0.8496661627183233 0.7944699824062134 1.037103056069802 0.9666494061132566 1.074981327147928 1.0805961216308737 1.0 23.037029889520444 4.757043125463685 3.165336843450935 0.9747824939623204 1.3615359298923397 0.5643725052411614 0.08633764955762059 0.3125094871257763 4.6982439536991425 0.023375910618295442 0.30616926445608994 57153.53873465796 -4.757043125463685 0.3867534359300193 TKPTQAAGPSS(ph)PQKPPT(ph)PEETK ddPTM_BT-474_Trastuzumab_2h_R1 8 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 2 TKPTQAAGPS(0.023)S(0.977)PQKPPT(0.962)PEET(0.038)K;TKPTQAAGPS(0.053)S(0.947)PQKPPT(0.995)PEET(0.005)K;TKPTQAAGPS(0.417)S(0.583)PQKPPT(1)PEETK;TKPTQAAGPS(0.052)S(0.947)PQKPPT(0.882)PEET(0.118)K;TKPTQAAGPS(0.119)S(0.881)PQKPPT(0.981)PEET(0.019)K;TKPT(0.001)QAAGPS(0.03)S(0.969)PQKPPT(1)PEETK;TKPTQAAGPS(0.032)S(0.968)PQKPPT(0.678)PEET(0.322)K;TKPTQAAGPS(0.008)S(0.992)PQKPPT(0.989)PEET(0.011)K 199.43 1.95e-22 16757360000.0 11232340.0 5750280.0 4849400.0 4610790.0 4713720.0 9122860.0 9011120.0 8512030.0 15877850.0 7567260.0 True False 11171866.329470284 5941674.59368233 5532153.368259577 5194515.541245049 5313984.301592652 8492218.161102492 8575217.699778723 9147240.901812542 11964966.619789599 7084310.988142763 1.5769869996064532 0.838708888362905 0.7809021057261487 0.7332421670843184 0.7501060174358292 1.1987359356917262 1.2104519005632781 1.2911969727363142 1.6889386476420563 1.0 22.75619611444668 2.543509781671014 3.972776570908801 1.3070681558442867 0.9114831378536792 0.2751178758015512 0.2784252505966504 0.2883776029699115 8.901615469256047 0.09513975733589866 0.08673671694792026 349.5503824785961 -2.543509781671014 -0.3955850179906075 TKPTQAAGPSS(ph)PQKPPTPEETK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 1 TKPTQAAGPS(0.032)S(0.968)PQKPPTPEETK;TKPTQAAGPS(0.059)S(0.938)PQKPPT(0.004)PEETK 151.31 2.5862e-08 986310000.0 1177250.0 604670.0 623210.0 524630.0 551520.0 971960.0 1032650.0 917060.0 1608440.0 858870.0 True False 1170911.8168047697 624796.0754192665 710952.5509615733 591048.1042084747 621752.8028848501 904770.6929477352 982696.7743939144 985495.6739363221 1212061.5139917813 804056.1812843984 1.4562562219649335 0.7770552480813193 0.884207556026618 0.7350830924082136 0.773270347715831 1.125258052866972 1.2221742675047353 1.225655242600203 1.5074338612205376 1.0 19.616936783836866 2.512468214630453 3.888188841951352 1.2488079301996875 0.9047650204234562 0.3042465222742706 0.2232619501766623 0.2557967717295802 8.291998805139123 0.07580669672476764 0.0677333483425371 325.43796430407184 -2.512468214630453 -0.3440429097762313 TKPVTGNLRPEEALQALTIYEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKPVTGNLRPEEALQALTIYEGK 23 2 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 85.24799999999998 0.0040305 800870000.0 891030.0 793430.0 740640.0 707490.0 763360.0 1053230.0 940640.0 917420.0 1401420.0 1077040.0 False True 886232.7934827384 819838.8379114366 844915.6742417156 797058.1614594155 860569.3712107973 980422.6891367371 895137.6496062484 985882.5389643661 1056058.8190659021 1008302.3850996656 0.8789355322164976 0.8130882660070269 0.8379586190884591 0.7904951661704442 0.8534834231555789 0.9723498660967933 0.8877670655492583 0.977764759394987 1.0473632063872547 1.0 19.94349693044634 2.222688364556247 0.8408818403430406 1.0179199266959311 0.8267169239068785 0.7609690899434928 0.040552390156542564 0.29804723743712047 0.40065261186497914 0.03245324134460207 0.018906625008084117 166.98919247407989 -2.222688364556247 -0.19120300278905267 TKPYIQVDIGGGQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TKPYIQVDIGGGQTK 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 216.77 1.9715e-12 1886280000.0 2831000.0 2781900.0 2754000.0 2185090.0 2673500.0 3214000.0 2892000.0 3207700.0 5290200.0 3093400.0 False True 2815758.2105536656 2874493.8598059383 3141739.2618028806 2461722.1699576722 3013954.3779240083 2991823.7449421994 2752102.9114871477 3447074.8623705576 3986501.09504819 2895976.5636070203 0.9723000682873482 0.9925818792627504 1.0848634969233852 0.8500490649314951 1.0407385252351777 1.0330966702354105 0.9503194694570753 1.1902979139020133 1.3765653856269096 1.0 21.46561849643288 1.6617915329094524 5.2667341920759 1.2176063135723305 0.9915804682754409 0.4308735586519119 0.10389379217766505 0.11777565606070627 7.198878874554658 0.05173244339592102 0.025074842039440638 45.89776446164311 -1.6617915329094524 -0.22602584529688963 TKQEVEISR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKQEVEISR 9 1 Q14694;Q14694-3;Q14694-2;H3BQP1 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 0 95.618 0.0072259 190340000.0 207020.0 219160.0 194990.0 207900.0 206820.0 193520.0 220900.0 233850.0 251510.0 283210.0 False True 205905.4273220845 226454.60811498258 222442.89711653715 234220.1186835329 233157.30108181902 180142.4178970798 210214.22308005195 251301.07446623893 189528.7305613346 265135.2953317201 0.7766051180189683 0.8541096266781729 0.8389788196182293 0.8833984867631142 0.8793899008810114 0.6794358241579919 0.7928564275723665 0.947822032339479 0.7148377975260086 1.0 18.016369211826355 -1.6146515295102046 2.992146271244847 1.0120932839717438 0.827679291145091 0.32645888799924094 0.0771813891703648 45849295.586288564 57562484.28800141 4443648.576534186 0.019157543022346967 0.024285579470185985 1.6146515295102046 -0.18441399282665283 TKS(ph)DES(ph)GEEKNGDEDCQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKSDESGEEKNGDEDCQR 18 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 2 T(0.167)KS(0.833)DES(1)GEEKNGDEDCQR 131.77 8.6995e-06 249760000.0 154830.0 88884.0 78387.0 82474.0 70584.0 134740.0 120620.0 124510.0 221540.0 113960.0 True False 153996.41248323006 91842.45020848725 89423.20824798192 92915.19994375017 79572.4540158548 125425.74094384322 114785.14978685325 133801.56844896916 166944.43548390927 106686.97523393534 1.443441546126489 0.8608590693203354 0.8381829933026154 0.870914183666868 0.7458497519624507 1.1756424874622127 1.0759059344888242 1.254150922880501 1.5648061548079866 1.0 16.703024531457736 2.1142448941595076 1.6250216478113158 1.2938172661153071 0.9458416297202338 0.24146338427967406 0.22624376514485783 0.48303712839199064 2.4410617823196787 0.13242814122868246 0.07168657246516222 130.09029369372553 -2.1142448941595076 -0.34797563639507334 TKS(ph)PTDDEVTPSAVVR ddPTM_BT-474_Trastuzumab_2h_R1 5 TKSPTDDEVTPSAVVR 16 1 A0A1B0GUN5;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 T(0.167)KS(0.806)PT(0.028)DDEVTPSAVVR;T(0.014)KS(0.982)PT(0.004)DDEVTPSAVVR;T(0.049)KS(0.94)PT(0.011)DDEVTPSAVVR;T(0.002)KS(0.971)PT(0.027)DDEVTPSAVVR;T(0.291)KS(0.706)PT(0.003)DDEVTPSAVVR 205.84 1.3058e-11 5905750000.0 1247520.0 1027180.0 953440.0 900490.0 919020.0 1288680.0 1266110.0 1141700.0 1616020.0 1204970.0 True False 1240803.4909325023 1061369.0653565775 1087676.0645509583 1014491.9416706811 1036051.749541693 1199596.5848264203 1204863.4222901063 1226899.451435131 1217773.524558578 1128067.782973282 1.0999369981669713 0.9408734841793773 0.9641938906225457 0.8993182475229939 0.9184304038990817 1.0634082480971203 1.0680771496854664 1.0876114626741271 1.079521588098949 1.0 20.10542232785996 2.721590968876428 22.91233552488374 1.0676111297490785 0.9595913789647763 0.4211585301429569 0.05525082062929053 240.29572392603998 324444.8950637404 0.01781801851551839 0.016852869539318444 526.7335348307637 -2.721590968876428 -0.10801975078430215 TKS(ph)WGEQCPETSGTDSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 TKSWGEQCPETSGTDSGR 18 1 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 T(0.002)KS(0.998)WGEQCPETSGTDSGR;T(0.029)KS(0.971)WGEQCPETSGTDSGR;T(0.029)KS(0.971)WGEQCPETSGTDSGR 234.03 5.6513e-24 1845880000.0 967990.0 824060.0 746270.0 792880.0 823690.0 961620.0 918170.0 947540.0 1230110.0 935350.0 True False 962778.4493937982 851488.3389452103 851338.3293048773 893258.5267041818 928582.0391068719 895145.472809994 873754.6093499833 1018250.246310626 926965.8731295104 875655.1622065762 1.099494973532365 0.972401438026737 0.9722301267083009 1.0201030785374994 1.0604426025045344 1.0222579748794078 0.9978295647206559 1.1628438799409604 1.0585969376274054 1.0 19.740003314902637 1.7695477294278028 24.999999999997954 1.0907472058103715 1.0185274408324212 0.15480584843717138 0.05243577440043753 32.87486804007937 26536.92519151992 0.023401297795071337 0.012980273271414721 58.82307577798439 -1.7695477294278028 -0.07221976497795035 TKVEAFQTTISK ddPTM_BT-474_Trastuzumab_2h_R1 1 TKVEAFQTTISK 12 1 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 PSME2 Proteasome activator complex subunit 2 0 170.95 0.00015321 0.0 1219200.0 1000700.0 965660.0 856420.0 904990.0 1298000.0 1204900.0 1185200.0 1597000.0 1266400.0 False True 1212635.9626658529 1034007.694564075 1101616.5343328142 964842.6841892803 1020235.1122040199 1208272.31516334 1146614.3838350151 1273645.642323653 1203440.7487036346 1185577.267780412 1.0228232234378944 0.8721554660877572 0.9291815592881723 0.8138167881673526 0.8605386927788025 1.019142613475895 0.9671359387496172 1.0742831167032403 1.0150673274603736 1.0 20.17715826015843 2.7278904412846465 23.770404200179694 1.0201832768076449 0.8950389457764371 0.5083656080399532 0.05655168931770672 287.7396407789997 641008.0214119627 0.01833584800253054 0.01746783761939771 534.4295227818276 -2.7278904412846465 -0.1251443310312078 TKVENGEGTIPVESSDIVPTWDGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TKVENGEGTIPVESSDIVPTWDGIR 25 1 A0A3B3IRQ9;P55265-3;P55265-2;P55265-5;P55265;P55265-4 A0A3B3IRQ9;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 103.29 0.004292 169360000.0 55163.0 51424.0 49194.0 53638.0 51004.0 61883.0 54850.0 55480.0 85941.0 60014.0 False True 54866.00853718546 53135.61675353557 56120.08759808672 60428.56530037196 57499.057075607285 57605.173866913 52196.695952652095 59620.19932173162 64761.99210040017 56183.855139429594 0.9765440338870717 0.9457452967880308 0.9988650201880127 1.0755503542860918 1.0234088944753577 1.0252976361973767 0.9290337201517642 1.0611624847347012 1.1526797500755779 1.0 15.777868000092745 4.006056690483008 5.866167837202761 1.0347683824922365 0.9629606570222278 0.24584261458020484 0.054186916147444565 0.2264589972454306 29.943015384738203 0.014081484770688883 0.02929077421103127 10140.43744954335 -4.006056690483008 -0.07180772547000869 TKVFPGER ddPTM_BT-474_Trastuzumab_2h_R1 1 TKVFPGER 8 1 Q7L0J3-2;Q7L0J3 Q7L0J3-2 SV2A Synaptic vesicle glycoprotein 2A 0 58.676 0.094339 777780000.0 507700.0 620560.0 466150.0 642080.0 670260.0 813760.0 764620.0 782040.0 960680.0 815950.0 False True 504966.59961077286 641214.9644635578 531779.8681515654 723367.2621660547 755613.6380577311 757506.6865849928 727632.4094679473 840399.7959186564 723933.2864524788 763875.3724300594 0.6610588819015863 0.8394235337417788 0.6961605090891385 0.9469702627862719 0.9891844472665143 0.9916626637342603 0.9525538271422274 1.1001791997104915 0.9477112531452405 1.0 19.54297775374022 3.6180995898452823 3.8146230733903344 1.0033036395084842 0.7428911822449389 0.802542260585439 0.05868691787486157 0.0964023846493198 2.471139968981853 0.015652191694620322 0.025185939826868037 4150.492083553565 -3.6180995898452823 -0.26041245726354534 TKYWELIYEDSMDLIAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TKYWELIYEDSMDLIAK 17 1 O75390;B4DJV2;A0A0C4DGI3;F8VPA1;F8VRI6;F8VR34 O75390 CS Citrate synthase, mitochondrial;Citrate synthase 0 124.26 4.6369e-05 85716000.0 194650.0 233950.0 219660.0 204770.0 264890.0 422070.0 283740.0 194400.0 412410.0 308230.0 False True 193602.02602764804 241736.8843242383 250586.21868105335 230693.8610044589 298622.17137396324 392893.29434590985 270014.41220794024 208907.1151431981 310777.0815108737 288558.49751102034 0.6709281746944714 0.8377396140101753 0.8684069983816131 0.7994699965321536 1.0348756801471721 1.3615724289349853 0.9357354385227492 0.723967988969792 1.0769985434201423 1.0 18.138504290756984 4.096412231389633 1.093468703787965 0.9859357082266675 0.6968625740551821 0.30088088506401645 0.15923829098921294 1.1850637670821464 2.224300918197039 0.05821968623303786 0.3111439548211222 12485.680901055646 -4.096412231389633 -0.2890731341714854 TLAGDVHIVR ddPTM_BT-474_Trastuzumab_2h_R1 6 TLAGDVHIVR 10 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 ;;;;; 185.08 1.4884e-06 4983910000.0 5045270.0 6110710.0 5480620.0 5618120.0 5395470.0 5852760.0 5943120.0 5159690.0 6677830.0 5724730.0 False True 5018106.826902188 6314101.288347798 6252243.657596977 6329373.4159611855 6082551.123043818 5448172.477115091 5655628.580676859 5544732.268174937 5032168.274837571 5359372.830212067 0.9363235187919601 1.1781418252437486 1.1665998719759865 1.1809914362145124 1.1349371121850345 1.0165690370340423 1.0552780632828394 1.034586031581523 0.938947230256129 1.0 22.353632751409677 2.736677560384873 24.070663036729123 1.0169735073364097 1.1287063614517088 0.364205144685117 0.07198423218783508 111.09413884448712 1420078.6986037919 0.022633397667971195 0.022355369403454936 545.3528164666765 -2.736677560384873 0.1117328541152991 TLAGHEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TLAGHEGK 8 0 O43172-2;O43172 O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 0 ;; 90.657 0.013041 496780000.0 974740.0 1004010.0 960240.0 936670.0 937010.0 896370.0 1126450.0 1004110.0 1371240.0 1131600.0 False True 969492.108143794 1037427.8659131383 1095433.4454442984 1055252.3259610618 1056332.669406611 834406.0517280148 1071959.3100431184 1079041.7869672666 1033316.2756746212 1059380.3191884996 0.9151501973214291 0.9792780242583917 1.0340322786847844 0.9961033887899674 0.9971231768924845 0.7876359760649336 1.0118739140484077 1.0185594044203388 0.975396896617974 1.0 20.014789181417502 TLALLAFDSPEESPFGDLLHTMQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLALLAFDSPEESPFGDLLHTMQR 24 0 Q9NWU2 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog 0 209.56 5.1460999999999995e-25 210400000.0 217930.0 241440.0 222160.0 250300.0 228810.0 260660.0 310550.0 254380.0 346900.0 333890.0 False True 216756.68909429922 249476.184446438 253438.19695066352 281987.95433616295 257947.59723687766 242641.18772764006 295527.51008379465 273363.12731546693 261411.14322184742 312580.8543423892 0.6934419881547581 0.7981172902329177 0.8107924507527801 0.9021280427728438 0.8252187990833618 0.7762509582940103 0.9454434140105236 0.8745357353718003 0.8362992793394427 1.0 18.25386989003869 7.999999999999992 0.08432884093626325 1.0920243585240945 0.16297910346991928 0.589914902853603 0.053488430472893735 129.10791133638037 0.7882836903142612 1.2298860708041615 13.92147570293819 99999999.99999815 -7.999999999999992 -0.9290452550541752 TLAYIITELDER ddPTM_BT-474_Trastuzumab_2h_R1 2 TLAYIITELDER 12 0 G3V2V6;H0YJH8;G3V2S6;Q9Y5K8 G3V2V6 ATP6V1D V-type proton ATPase subunit D 0 ; 212.72 3.9418e-08 59870000.0 49315.0 67446.0 65608.0 63135.0 64142.0 63231.0 64542.0 59202.0 69005.0 67032.0 False True 49049.49351941158 69690.89933803202 74845.03612504106 71127.88452662264 72310.10350058027 58859.98979976368 61419.856885616624 63619.953861664704 51999.64236962705 62753.96037101746 0.7816159048674926 1.1105418514784022 1.1926743058531775 1.1334405686285995 1.1522795226478846 0.9379486083709836 0.9787407284335 1.0137998221232136 0.8286272621232488 1.0 15.937418889247628 2.7255180996392916 24.39934963100446 0.9599977659354815 1.0860174001520597 0.21351496464595643 0.11570115029450445 897.4898221309215 1678980.0354341061 0.037728762006326536 0.03578161355576913 531.5181505740426 -2.7255180996392916 0.12601963421657825 TLAYLLPAIVHINHQPYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 TLAYLLPAIVHINHQPYLER 20 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ; 164.94 1.0063e-11 2811900000.0 1005080.0 1231500.0 1164760.0 1235970.0 1135110.0 1164380.0 1157890.0 457990.0 1370770.0 937720.0 False True 999668.7609548862 1272489.7330425298 1328748.0837245893 1392443.6752731411 1279659.5301759182 1083889.1512556942 1101878.437130653 492167.5394260977 1032962.1008769443 877873.9067775183 1.1387384375330734 1.4495131057187463 1.5135978794518803 1.586154531445746 1.457680334608949 1.2346752111979413 1.2551670901979601 0.5606357993173944 1.1766634056463992 1.0 19.743654207898206 1.9427414635384248 6.116098092405627 0.8696664241829993 1.4033377466980537 0.5649986418645182 0.18881291140738765 0.14501249035758185 11.599407767305639 0.08242481253851665 0.05091144754883907 87.64788959902953 -1.9427414635384248 0.5336713225150543 TLCDSSSLLFHQIS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLCDSSSLLFHQISPSR 17 0 A0A0A0MRS1;A0A0A0MR11;Q06730;Q06730-2;Q06730-3 A0A0A0MRS1 ZNF33A Zinc finger protein 33A 1 TLCDSSSLLFHQIS(0.989)PS(0.011)R;TLCDSSSLLFHQIS(1)PSR;TLCDSSSLLFHQIS(1)PSR;TLCDSSSLLFHQIS(0.998)PS(0.002)R 282.22 3.2660000000000004e-36 1193020000.0 489710.0 687080.0 728860.0 625110.0 605360.0 713320.0 665880.0 572970.0 719200.0 664540.0 True False 487073.4557718956 709949.0424513698 831477.15263531 704248.8619060284 682449.007750168 664009.8673746651 633668.8404913767 615727.9308827067 541962.7967862582 622128.4882586829 0.7829145666278651 1.1411614414869407 1.336503902855481 1.1319990567819804 1.0969582982131556 1.0673195005636325 1.0185497890716995 0.989711840083242 0.8711428700254416 1.0 19.246853045516353 2.060599267144016 1.3701488812088258 0.9429613473357893 1.1147233308803046 0.1865591006910975 0.13059507652491142 0.6892276801105373 2.4256848996050997 0.09085681111254841 0.04498392110295791 114.97390104365081 -2.060599267144016 0.17176198354451533 TLDELGIHLTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLDELGIHLTK 11 0 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ; 180.97 6.4313e-06 1414740000.0 2824500.0 3494500.0 3242000.0 3082400.0 3328900.0 3999100.0 3821500.0 3539700.0 4600900.0 4027600.0 False True 2809293.205831452 3610812.3200301416 3698445.4200308416 3472631.523954406 3752815.6830638535 3722651.6298688073 3636639.4454523274 3803850.388232401 3467069.8439014093 3770555.1197981597 0.7450609039185283 0.9576341428005516 0.9808755746896022 0.9209868079425658 0.9952952718709346 0.9872953747107888 0.9644838306055579 1.0088303359522361 0.9195117784372833 1.0 21.84634550916376 4.739067800615492 4.400146458339468 0.9733359802614944 0.728819256370828 0.8450456363530678 0.029021941486473617 0.06892252060995598 3.2733904669710356 0.006653227041643751 0.05264474966139272 54836.2566785682 -4.739067800615492 -0.24451672389066637 TLDFDPLLSPAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLDFDPLLSPASPK 14 0 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 TLDFDPLLS(0.004)PAS(0.996)PK 78.486 0.011784 0.0 42684.0 36063.0 25000.0 23307.0 28144.0 36306.0 33441.0 33277.0 49502.0 38812.0 True False 42454.1940866382 37263.33515445615 28519.782696104572 26257.663810279453 31727.971577442753 33796.25167513119 31823.33107297429 35760.29871718212 37302.89539281612 36334.98493137503 1.1684109451764013 1.0255497621599259 0.7849124679690708 0.7226551451685377 0.8732072309199129 0.9301297837046395 0.8758316848920734 0.9841836671935242 1.0266385265679663 1.0 15.149071687566016 1.6031995949382136 4.4216753705969065 1.0110899967633757 0.9032012981311552 0.11639538645049818 0.11608507257197845 0.3644329474671766 15.959499428215404 0.07302176975779073 0.03291751401722002 40.10509920304599 -1.6031995949382136 -0.1078886986322205 TLDFDPLLSPAS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLDFDPLLSPASPKR 15 1 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 TLDFDPLLS(0.004)PAS(0.996)PKR;TLDFDPLLS(0.004)PAS(0.996)PKR 153.21 1.6498e-06 141932000.0 384720.0 321080.0 279330.0 279290.0 269460.0 424900.0 431400.0 348130.0 673070.0 469440.0 True False 382648.7102664104 331766.95370304113 318657.2360201154 314648.0853637513 303774.13378545083 395527.66310701397 410531.53389196267 374109.2283683206 507200.9171759264 439479.9372921959 0.8706852754736781 0.7549080755476218 0.7250780046604278 0.7159555162003949 0.6912127449028038 0.8999902601789089 0.9341303187158089 0.8512543955324804 1.154093450319906 1.0 18.745437780807276 1.9290280527749317 0.9544565165421164 1.040800123045221 0.7524835205167704 0.6411215179860933 0.08297891860687304 0.3618539674317649 0.6065809908857229 0.07011043682785667 0.032068248638776574 84.92353286877544 -1.9290280527749317 -0.2883166025284507 TLDGFKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLDGFKK 7 1 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 P4HB Protein disulfide-isomerase 0 ; 122.13 0.007008499999999999 9040900000.0 5821900.0 6248800.0 5658700.0 5290500.0 5556900.0 6795700.0 7633300.0 6816800.0 9622800.0 6322000.0 False True 5790555.537273895 6456787.530520634 6455395.773697876 5960276.757552808 6264538.276673232 6325929.2543571 7264048.116962246 7325504.231009009 7251389.878913792 5918524.547463496 0.9783782243085491 1.0909454676990098 1.0907103150335784 1.0070544963959314 1.0584628358697992 1.0688355186544265 1.2273410473688753 1.237724735660428 1.225202298437965 1.0 22.49680613481311 2.2992223852114346 5.896892048230955 1.198356893206797 1.0500961496119372 0.39132005561073957 0.07282525971521124 0.1604857499345364 10.96275834277601 0.02420630021638756 0.01994742514785823 199.16929459426467 -2.2992223852114346 -0.14826074359485975 TLDGIFSEQVAMGYSHSLVIAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLDGIFSEQVAMGYSHSLVIAR 22 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ;; 269.11 3.5756e-38 731607000.0 360915.0 413982.0 436454.0 437711.0 470041.0 442195.0 454420.0 428229.0 499280.0 482887.0 False True 358971.8737414262 427761.14061259606 497902.9294738248 493125.1677204804 529897.9351987193 411627.1004650642 432437.96854702284 460185.62248280185 376239.1340092369 452068.7382396393 0.7940648033731921 0.946230306210296 1.1013876593472585 1.0908189972186868 1.1721623071352991 0.9105409546077986 0.9565756973838561 1.017954977985803 0.8322608979207813 1.0 18.786182629328742 -0.5624397754942875 7.643852223259817 1.000004945865927 0.9907466951320388 0.0 0.11370648390154989 0.0 0.0 0.11139433589669258 0.0262558967661078 0.273879940285734 0.5624397754942875 -0.009258250733888196 TLDKVS(ph)LEETAQLPSAPQGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLDKVSLEETAQLPSAPQGSR 21 1 Q9BRP8-2;Q9BRP8 Q9BRP8-2 WIBG Partner of Y14 and mago 1 TLDKVS(0.998)LEET(0.002)AQLPSAPQGSR 235.69 5.0123e-30 412520000.0 250570.0 184120.0 168860.0 193550.0 172520.0 239040.0 210830.0 215840.0 330150.0 225590.0 True False 249220.9589609444 190248.32289710952 192634.02024256866 218053.41015487126 194489.39939384657 222515.72743963436 200631.34745118796 231947.07681331187 248788.95628334707 211192.6530626839 1.1800645304028325 0.9008283202003342 0.9121246286223467 1.0324857753936687 0.9209098733946978 1.0536149066397194 0.9499920785200741 1.098272470418125 1.1780189920219633 1.0 17.688200121754416 1.659797909709357 6.068126614658469 1.1051873176951232 0.987545354917275 0.20159475651844194 0.08885749121094849 0.17886405077787498 13.726471315493 0.043608737198199035 0.021629487598576566 45.68755422056119 -1.659797909709357 -0.11764196277784822 TLDRS(ph)GDLGDMEPLK ddPTM_BT-474_Trastuzumab_2h_R1 6 TLDRSGDLGDMEPLK 15 1 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20;O60716-27;O60716-29;O60716-32;O60716-31;O60716-25;O60716-26;O60716-28;O60716-30;H0YC95 O60716-13 CTNND1 Catenin delta-1 1 T(0.018)LDRS(0.982)GDLGDMEPLK;T(0.192)LDRS(0.808)GDLGDMEPLK;T(0.001)LDRS(0.999)GDLGDMEPLK;TLDRS(1)GDLGDMEPLK;T(0.139)LDRS(0.861)GDLGDMEPLK;TLDRS(1)GDLGDMEPLK 188.48 1.8021e-07 2151744000.0 1373610.0 1653442.0 1630543.0 1935512.0 1806781.0 2139410.0 2255951.0 1804215.0 3066020.0 2068883.0 True False 1366214.6363824187 1708475.817443204 1860109.2814661781 2180547.620747485 2036863.8507199986 1991517.6223294332 2146822.031560281 1938854.684918133 2310440.4535631277 1936845.1156801502 0.7053814604595543 0.8820921216734715 0.9603810167407086 1.1258244673744888 1.0516400275014894 1.0282276090156461 1.108411826108457 1.0010375477221767 1.1928885974714525 1.0 20.885277159416965 4.510746964828645 1.3644717394764976 1.068328762158033 0.6400267829019225 0.7934623603504396 0.059292365821293574 0.34474401031937585 0.7820924461902916 0.015625183134136206 0.18216154388450057 32415.070077204542 -4.510746964828645 -0.4283019792561106 TLDS(ph)DEERPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLDSDEERPR 10 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 TLDS(1)DEERPR;TLDS(1)DEERPR 215.77 4.8659e-09 998830000.0 1179840.0 1124890.0 963210.0 909280.0 935200.0 1081500.0 1041230.0 995170.0 1249240.0 1049760.0 True False 1173487.8725325482 1162331.2836396366 1098821.595628595 1024394.7547694204 1054292.176635322 1006738.4505771595 990861.7270151323 1069434.6387708664 941381.5409583781 982763.4180552466 1.194069550181995 1.182717287075795 1.1180937094738543 1.042361504253543 1.0727832937876554 1.024395528040061 1.008240344330186 1.0881913379388197 0.957892330609174 1.0 19.906484630903133 4.020373285953599 1.1573458101789718 1.028849559701838 1.2133504800807888 0.7887641705358244 0.034042817507976005 0.28263996819237613 0.6362436940698092 0.01061045241929949 0.04709019522169806 10480.289656878895 -4.020373285953599 0.18450092037895094 TLDS(ph)DEERPRPAPPDWSHMR ddPTM_BT-474_Trastuzumab_2h_R1 8 TLDSDEERPRPAPPDWSHMR 20 2 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 TLDS(1)DEERPRPAPPDWSHMR;T(0.004)LDS(0.996)DEERPRPAPPDWSHMR;T(0.018)LDS(0.982)DEERPRPAPPDWSHMR;T(0.004)LDS(0.996)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.011)LDS(0.989)DEERPRPAPPDWSHMR;T(0.001)LDS(0.999)DEERPRPAPPDWSHMR 287.32 1.071e-45 22664470000.0 3370990.0 4024220.0 3434110.0 3888820.0 3551730.0 4090370.0 4031860.0 3541050.0 4819920.0 3988280.0 True False 3352840.9643921987 4158163.7300076406 3917602.838180788 4381144.213270298 4004021.762746976 3807612.3495952864 3836823.5285990858 3805301.132087562 3632115.2996190498 3733744.555861708 0.8979834892905252 1.1136711866053144 1.0492423302045224 1.173391523636029 1.0723877069900116 1.0197838370109202 1.0276073982017735 1.0191648290758175 0.9727808759484878 1.0 21.83219179828152 2.675133564824982 4.427408295830369 1.0105271604660844 1.0698145220618995 0.132745252498361 0.0667315918386937 0.4331249434203156 17.14890154067344 0.021695644033164964 0.020653558778178073 473.2967963481308 -2.675133564824982 0.05928736159581516 TLDSGTSEIVKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLDSGTSEIVKSPR 14 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR 205.65 7.2367e-09 2970970000.0 3298340.0 2904020.0 2591050.0 2543800.0 2613820.0 3320030.0 3567070.0 3133620.0 4896140.0 3692230.0 True False 3280582.1039200253 3000678.550182841 2955847.3181896703 2865844.819178311 2946674.4836750785 3090524.140609972 3394517.19656931 3367466.6365999416 3689551.9019147214 3456588.7203228613 0.9490808335489805 0.8681040161186905 0.8551342254896847 0.8290962712250672 0.8524805008910188 0.8940965763266459 0.9820425486582756 0.9742167521409387 1.0673968471349118 1.0 21.720917525123227 2.129544207829632 1.6531995675023334 1.0171376683599636 0.8665710498410073 0.760990052917424 0.036467463552008215 0.18446161348941315 0.9702287371299493 0.02179464564364468 0.01203184798044242 134.75478883479894 -2.129544207829632 -0.15056661851895625 TLDSWRDEFLIQASPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLDSWRDEFLIQASPR 16 1 P51149;C9J592 P51149 RAB7A Ras-related protein Rab-7a 0 249.86 1.0392e-20 905270000.0 249780.0 326400.0 308990.0 311960.0 331330.0 337010.0 335600.0 301590.0 355710.0 309780.0 False True 248435.21223316668 337264.0266870334 352493.1062107743 351454.10401402024 373522.91155323014 313713.29193620774 319365.7458835013 324096.177242989 268050.0367697992 290009.5751839988 0.8566448610379331 1.1629410045273632 1.2154533380048997 1.21187069010062 1.287967513887242 1.0817342556264562 1.1012248325969143 1.1175361263067392 0.9242799538592227 1.0 18.1457410086164 1.3224164336458104 4.78789345443173 0.9629163593222339 1.139673797349243 0.26551029496046297 0.11032562313481575 0.25837217372590876 9.46656969317504 0.08248621054986884 0.028026798056765473 21.009534675384845 -1.3224164336458104 0.17675743802700916 TLDTDLDGVVTFDLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLDTDLDGVVTFDLFK 16 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ; 160.69 2.0226e-08 39217000.0 180008.0 183311.0 141351.0 135394.0 156216.0 187360.0 183903.0 156131.0 222408.0 187655.0 False True 179038.8569287691 189412.39582116064 161251.9921550829 152534.86651774056 176109.1816352258 174408.2441979997 175006.90931231686 167782.28803715363 167598.52851451354 175678.69724047143 1.0191267338674435 1.0781750934883718 0.9178801681023336 0.8682604602250023 1.0024504074854625 0.9927683147562695 0.9961760421798038 0.955051982241711 0.954005984488275 1.0 17.422579735510958 4.243609293468941 24.99999773623953 0.9601717750035408 1.0486509258632408 0.4097079639355916 0.04216216198896644 121.13758125304656 599828.89138555 0.010817359599544375 0.027787196386421267 17523.033590294228 -4.243609293468941 0.08847915085970004 TLEAEFNSPS(ph)PPTPEPGEGPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLEAEFNSPSPPTPEPGEGPR 21 0 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-7 A0MZ66 KIAA1598 Shootin-1 1 TLEAEFNS(0.004)PS(0.859)PPT(0.137)PEPGEGPR 128.38 5.0002999999999985e-06 0.0 127140.0 147490.0 114860.0 130960.0 123380.0 146550.0 137820.0 117910.0 140870.0 150710.0 True False 126455.49236658204 152399.11549041243 131031.28961898295 147539.52257236856 139091.71166944614 136419.34344159294 131153.1200764725 126709.04293484804 106154.47606129067 141091.55877067748 0.8962654709351953 1.0801433963750704 0.9286968742896522 1.0457005639307682 0.9858258912251314 0.9668852242487553 0.9295603593808303 0.8980625349869017 0.7523800643086548 1.0 17.106272151358723 2.014268917452066 1.8003250971617277 0.8703316948683755 0.9908419113973266 0.2689186137177373 0.07436697642364852 0.40068086947624265 2.4298941550889954 0.04161745383686521 0.02119072861740179 103.34010951434837 -2.014268917452066 0.12051021652895111 TLEDPDLNVR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLEDPDLNVR 10 0 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ;; 196.88 7.5678e-07 1069630000.0 605880.0 648760.0 617200.0 626110.0 649900.0 769670.0 654000.0 580490.0 766810.0 722600.0 False True 602618.0093995968 670353.5844162976 704096.3952014302 705375.461803496 732660.9127409054 716464.5245082963 622363.521477383 623809.1114684937 577839.9502275728 676483.0493510161 0.890810213171961 0.9909392187422896 1.0408189767310578 1.0427097360091993 1.0830440074496819 1.0591019615282844 0.9199986933515146 0.9221356131050806 0.8541824525860974 1.0 19.367694259453692 2.224347024711906 24.270674886327992 0.9181634180885394 1.02180837047569 0.3747605080620935 0.05904426144884769 169.3535602448972 289179.95805484697 0.02275387076725884 0.01689155731243062 167.6281780568827 -2.224347024711906 0.10364495238715055 TLEEDEEELFK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLEEDEEELFK 11 0 P43487;F6WQW2;P43487-2;C9JJ34;C9JDM3 P43487 RANBP1 Ran-specific GTPase-activating protein 0 ;;; 271.26 1.1426999999999999e-26 1069810000.0 1554100.0 1298880.0 1124219.0 1121577.0 1007532.0 1454260.0 1426140.0 1406440.0 2231240.0 1429190.0 False True 1545732.8982767412 1342112.4356104597 1282499.2633132783 1263568.533202119 1135835.2280899668 1353730.4291598154 1357152.159816142 1511395.6945576093 1681380.799084219 1337977.8706088807 1.1552753840191066 1.0030901594805133 0.9585354821523652 0.9443867204074908 0.8489192930919525 1.011773407391085 1.0143307969649271 1.1296118775640216 1.2566581525889244 1.0 20.351622824147462 1.7888942238146124 2.963744692498741 1.1477854303106503 0.9801289295977229 0.31696268267405725 0.09216733502282028 0.259505061618945 4.365181568562968 0.05231316189678879 0.025518141034766323 61.50270592952896 -1.7888942238146124 -0.16765650071292737 TLEEVVMAEEEDEGTDRPGS(ph)PA ddPTM_BT-474_Trastuzumab_2h_R1 2 TLEEVVMAEEEDEGTDRPGSPA 22 1 A6NKF1;F8WC89 A6NKF1 SAC3D1 SAC3 domain-containing protein 1 1 TLEEVVMAEEEDEGTDRPGS(1)PA;TLEEVVMAEEEDEGTDRPGS(1)PA 86.89 0.0017671 358170000.0 620110.0 673110.0 659010.0 656150.0 671780.0 769850.0 711050.0 681440.0 826550.0 753200.0 True False 616771.3966606976 695514.0594464131 751792.8797823953 739218.5227234245 757327.2010479858 716632.0815319702 676653.7950252194 732292.5130822058 622857.8277025598 705130.131153037 0.8746915915394877 0.986362699192985 1.0661760809356635 1.048343405088428 1.0740247332922728 1.0163118123460773 0.9596154881635073 1.0385210909718927 0.8833232338037454 1.0 19.427530004635475 1.2554979752311617 24.95312887976142 0.9416615547022208 1.0118926361789713 0.15449525798765695 0.0615466530776599 355.7548137445406 524123.1844123114 0.0414910043580893 0.015063102424046336 18.009347380998314 -1.2554979752311617 0.0702310814767505 TLEFVPINLHLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLEFVPINLHLQR 13 0 O15327;D6RJC3;E7EQN9;E9PHC0;E9PCZ3;E9PG59 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ; 125.61 0.00019815 1302590000.0 960730.0 1214090.0 1148130.0 1075550.0 874460.0 1023080.0 1181970.0 821220.0 1401550.0 1122530.0 False True 955557.5364271373 1254500.2517170957 1309776.7242751396 1211714.5197213753 985817.297669507 952356.887671272 1124793.5955361219 882503.6064706634 1056156.7823078134 1050889.174353715 0.9092847844919465 1.1937512368881327 1.2463509533064108 1.1530373985121372 0.938079220652143 0.9062391267442267 1.0703256090042579 0.8397684817843833 1.0050125247101702 1.0 20.003179101573085 3.238102387177821 24.987926099257255 0.9495192392337409 1.1390982600362891 0.3880039995527419 0.10088106539694947 11.034954482569127 601771.4695841391 0.028302566435566657 0.03585842411585765 1730.2242204742488 -3.238102387177821 0.18957902080254818 TLEGELHDLR ddPTM_BT-474_Trastuzumab_2h_R1 8 TLEGELHDLR 10 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;; 245.55 1.5277e-12 49237080000.0 13498430.0 15845700.0 14405090.0 15315900.0 13701990.0 14694780.0 15433600.0 13453320.0 17382660.0 14697200.0 False True 13425755.95269657 16373114.545572093 16433201.460713161 17254891.369625412 15446857.208442468 13678964.446391337 14687017.805922551 14457275.052974753 13098936.358710522 13759212.113094019 0.9757648797288244 1.1899747173742994 1.1943417490507635 1.2540610049324492 1.1226556492825919 0.994167713525812 1.0674316003854307 1.0507342233074828 0.9520120956813259 1.0 23.71389452428963 2.878513031940658 4.767598905753419 1.0239728046622074 1.162104423100959 0.45132121055727514 0.07381781924024731 0.21707214335644198 7.534767776488392 0.02302564798533272 0.024627906951391314 755.9847449479414 -2.878513031940658 0.13813161843875155 TLENPVNVYNPS(ph)HSDSLASQQSVASHPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLENPVNVYNPSHSDSLASQQSVASHPR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 TLENPVNVYNPS(0.484)HS(0.484)DS(0.031)LASQQSVASHPR 201.66 6.77e-25 571280000.0 95167.0 113340.0 114400.0 139390.0 126520.0 130680.0 125090.0 92212.0 113330.0 95716.0 True False 94654.63144604777 117112.4533845232 130506.5256173745 157036.75970802136 142631.57205720784 121646.39918763124 119038.91880979491 99093.32768304838 85401.34004419728 89607.32293340962 1.056326964665477 1.3069518154398343 1.4564270122695053 1.7524991771567704 1.5917401322568516 1.3575497538078554 1.328450788539425 1.1058619367156872 0.9530620628814236 1.0 16.451329017278912 1.7271957306062744 1.746462193858301 0.9716718199000036 1.4402666566172833 0.5306441142693327 0.17128875718081604 0.2833787829268203 1.725273283532051 0.13971178229984427 0.055427345069801015 53.35753164321486 -1.7271957306062744 0.46859483671727964 TLENPVNVYNPSHSDSLASQQSVASHPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLENPVNVYNPSHSDSLASQQSVASHPR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 ; 232.8 9.9233e-37 1431950000.0 134581.0 160610.0 169546.0 202827.0 168623.0 187931.0 225655.0 148857.0 171970.0 193160.0 False True 133856.43084935477 165955.80675920466 193416.60307974968 228504.87740367898 190096.13954317526 174939.77231198896 214739.20556418822 159965.4652205301 129590.29777993991 180832.3634274038 0.7402238643144883 0.9177328859379122 1.0695906386104272 1.2636282193779633 1.0512285297841084 0.9674140679039432 1.1875042801749176 0.8846063956065541 0.7166322185019978 1.0 17.46429337330654 -1.1028085159117724 6.856634844161507 1.0000000065920658 0.9905013903194829 0.0 0.1667442625436907 1.7870705752736952e-08 2.1557185453279925e-09 0.16532228775204588 0.0389668090456614 0.0789208009364999 1.1028085159117724 -0.00949861627258286 TLEPDS(ph)S(ph)DEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPR 39 1 Q9NWM3;Q9NWM3-2;J3KT42 Q9NWM3 CUEDC1 CUE domain-containing protein 1 2 T(0.015)LEPDS(0.98)S(0.979)DEEPPPVY(0.007)S(0.012)PPAY(0.002)HMHVFDRPY(0.002)PLAPPT(0.003)PPPR;T(0.013)LEPDS(0.994)S(0.994)DEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPR 87.676 0.00024781 468910000.0 30136.0 38682.0 31236.0 37269.0 32510.0 37956.0 35596.0 17851.7 43772.0 34155.0 True False 29973.751124424347 39969.50698623722 35633.75729182089 41987.25157872336 36649.95579813333 35332.1910588134 33874.08549007486 19183.884503095822 32984.97711474984 31975.19865843332 0.9374062517831738 1.2500159080542705 1.1144186365335573 1.3131193343704028 1.1461994713351706 1.1049873821345184 1.0593862403147483 0.599961385948611 1.0315800526246361 1.0 14.964665701991663 1.9581910510011202 9.42815360166458 0.8315439373902849 1.1495783154491397 0.39701177193356996 0.1439146139100856 0.3886484964547335 85.02212855115776 0.05741826904137546 0.03672806503463297 90.82199784398014 -1.9581910510011202 0.3180343780588548 TLEPVKPPTVPNDYMT(ph)SPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLEPVKPPTVPNDYMTSPAR 20 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 1 TLEPVKPPTVPNDYMT(0.5)S(0.5)PAR 114.64 0.00019591 588150000.0 297940.0 259550.0 243000.0 229610.0 248610.0 341530.0 300210.0 299290.0 424520.0 314090.0 True False 296335.92414424615 268188.96484871197 277212.28780613624 258678.60245755638 280269.0098730829 317920.83497514325 285687.6953864304 321624.53956382617 319902.73427656066 294044.50729402195 1.0077927551557118 0.9120692894988974 0.9427562186323896 0.8797260143985537 0.9531516587481615 1.081199706469085 0.9715797721083246 1.0937954343157523 1.0879398401980094 1.0 18.165675015867834 2.8366608962741124 5.280620614992313 1.0495032284249433 0.9326751114101283 0.5685436471766547 0.046987856329663735 0.1562761336678849 6.696610853270089 0.014163311571777984 0.015050863775416876 686.5321759324937 -2.8366608962741124 -0.11682811701481499 TLEPVKPPTVPNDYMTS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLEPVKPPTVPNDYMTSPAR 20 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 1 TLEPVKPPTVPNDYMT(0.18)S(0.82)PAR;TLEPVKPPTVPNDYMT(0.078)S(0.922)PAR;TLEPVKPPTVPNDYMT(0.196)S(0.804)PAR 165.96 1.0062e-11 1274940000.0 1373890.0 1151040.0 1167380.0 1081140.0 1129830.0 1529600.0 1393010.0 1435040.0 1998040.0 1659970.0 True False 1366493.1288935281 1189351.6705816258 1331736.9569511402 1218012.2131482183 1273707.1534729302 1423862.3522911007 1325624.7844850298 1542129.971785468 1505649.8143643155 1554029.2934281812 0.8793226322517067 0.7653341385592042 0.856957434832734 0.7837768684921564 0.8196159228524826 0.9162390685378055 0.8530243220581176 0.992342923204193 0.9688683609321541 1.0 20.56758226810535 1.9909240868524456 1.0001396570443633 1.0014264555393548 0.8179864924951242 0.7303967068609823 0.04134949309836569 0.2487924519085891 0.4579931861956322 0.03096091627037024 0.01454156527481039 97.93187889678762 -1.9909240868524456 -0.1834399630442306 TLEQHDNIVTHYK ddPTM_BT-474_Trastuzumab_2h_R1 5 TLEQHDNIVTHYK 13 0 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;;; 213.67 2.3543000000000004e-09 8554420000.0 7737250.0 8272170.0 7602130.0 7246560.0 7223860.0 8932510.0 8795650.0 6238350.0 10881840.0 8529940.0 False True 7695593.505689284 8547504.177817646 8672443.825101502 8163973.752993455 8143775.7518272335 8315026.608566785 8370170.806854057 6703887.354699437 8200156.341185452 7985551.926350961 0.9636896205377034 1.0703711223281058 1.086016834538877 1.0223430801387356 1.0198137620211523 1.041258849138356 1.048164345313931 0.8395020678004422 1.026874086702302 1.0 22.92896069316504 1.7877830338173457 24.999999999998572 0.9382511961212011 1.0382606712095481 0.29035350380907465 0.05567013185162427 106.86778408267489 54294.25536750311 0.024213757789755208 0.013621997681159646 61.34554566205145 -1.7877830338173457 0.10000947508834701 TLESTWEKPQELK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLESTWEKPQELK 13 1 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 ; 173.25 2.0061e-05 847630000.0 741760.0 683260.0 530100.0 639600.0 672180.0 1001740.0 954860.0 911590.0 1333220.0 929100.0 False True 737766.4465772841 706001.896060608 604733.472288201 720573.2944203351 757778.1386769996 932492.0716423161 908669.7738805721 979617.4747602266 1004665.7952327231 869804.0425574717 0.8481984567558926 0.8116792536221852 0.6952525427567712 0.828431760677548 0.8712055837874885 1.0720714391031383 1.044683318795374 1.1262507723922186 1.1550484316889578 1.0 19.73033088841707 2.8362436700325895 1.9348297418055045 1.0961620478695118 0.7871271613096923 0.8585809366065544 0.05509371412799108 0.11182382959296032 0.8290703968814451 0.019690645445129704 0.020747018241949102 685.8729419230948 -2.8362436700325895 -0.3090348865598195 TLETVPLER ddPTM_BT-474_Trastuzumab_2h_R1 5 TLETVPLER 9 0 P22626;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;; 154.49 0.00017583 2145970000.0 1542290.0 1877810.0 1755290.0 1801750.0 1774880.0 1834500.0 1821680.0 1670010.0 2036950.0 1898070.0 False True 1533986.4820045293 1940311.7706898837 2002419.5747458139 2029851.3652624085 2000900.4474620358 1707685.3329484975 1733558.3789066065 1794634.6263389518 1534970.9662316027 1776933.5475805183 0.8632773488312003 1.0919439127770547 1.1268961506592738 1.1423338638781761 1.1260412355805156 0.9610293729181322 0.9755898757536703 1.0099615873551013 0.863831384309012 1.0 20.760958298879473 2.724611890543142 24.101156743334393 0.9677514017552402 1.0784806360504502 0.2937297796195003 0.0830088521238161 638.3513983803094 1102966.4268872894 0.027169263922204902 0.02574398099470171 530.4102285906955 -2.724611890543142 0.11072923429520998 TLFLGIPDENFEDHSAPPS(ph)PEEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TLFLGIPDENFEDHSAPPSPEEK 23 0 Q99683-2;Q99683 Q99683-2 MAP3K5 Mitogen-activated protein kinase kinase kinase 5 1 TLFLGIPDENFEDHS(0.005)APPS(0.995)PEEK;TLFLGIPDENFEDHSAPPS(1)PEEK;TLFLGIPDENFEDHSAPPS(1)PEEK 123.89 3.8618e-05 300803000.0 290786.0 244041.0 236897.0 218356.0 237923.0 285216.0 298388.0 257465.0 346330.0 276603.0 True False 289220.44048536173 252163.75715910026 270250.0384543633 245999.84721145514 268221.08376989485 265499.68924624624 283953.8324871458 276678.3456807795 260981.6120842388 258949.95972825724 1.1168970282477373 0.9737933824114959 1.0436380787159203 0.9499899033373399 1.0358027630178694 1.025293417789531 1.0965587049526004 1.068462593974243 1.0078457334309439 1.0 17.98231380853852 2.4493215119815455 24.710051872977303 1.0537430798650458 1.0194440273989556 0.012912184855365272 0.0492976990862977 445.3429000087338 395844.2802540615 0.016336775342799058 0.013668461855537084 281.3983275766864 -2.4493215119815455 -0.03429905246609022 TLGDFAAEYAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLGDFAAEYAK 11 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ; 127.42 0.00066755 89056000.0 230330.0 230220.0 195995.0 215255.0 194779.0 246820.0 215520.0 215070.0 335650.0 250960.0 False True 229089.92887206873 237882.73352907135 223589.39238092038 242506.2609294079 219582.95110441762 229757.9143517843 205094.47423364766 231119.61550333112 252933.55497957108 234943.51794233444 0.9750851220687755 1.0125103072111925 0.9516729567137883 1.0321896218006308 0.9346201718079025 0.9779282968265466 0.8729522569079218 0.9837241628435057 1.0765717530528005 1.0 17.84195443897749 1.4594617438824362 24.99998447146954 1.0355735311583927 0.964950850174776 0.2974070057995263 0.04422713648786121 7.16904181046796 10152.125239898121 0.023498501826395648 0.010876760361745695 28.80459304797909 -1.4594617438824362 -0.07062268098361668 TLGECGFTSQTARPQAPATVGLAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLGECGFTSQTARPQAPATVGLAFR 25 1 B8ZZU8;Q15370;Q15370-2;I3L0M9 B8ZZU8 TCEB2 Transcription elongation factor B polypeptide 2 0 ; 277.15 3.8258e-53 992790000.0 55462.0 73598.0 58175.0 54680.0 56692.0 65130.0 80917.0 65941.0 56591.0 68154.0 False True 55163.39875440751 76047.66493906947 66365.53433383528 61602.482393533304 63911.390160189905 60627.7163995288 77002.73557704195 70861.8522616133 42644.90633054939 63804.35337042501 0.8645710808187141 1.1918883418121051 1.0401411632297406 0.9654902704818833 1.0016775781605916 0.9502128490754572 1.2068570796414457 1.1106115573370834 0.6683698537460051 1.0 15.961367241966808 1.2571463391065147 24.987251069952272 0.8341847592860765 1.050623857425797 0.3018218502544946 0.12546064886054703 229.7320534763658 308861.21121929825 0.08072735413059388 0.029365165990930663 18.077831708387432 -1.2571463391065147 0.2164390981397204 TLGEDDPWLDDTAAWIER ddPTM_BT-474_Trastuzumab_2h_R1 6 TLGEDDPWLDDTAAWIER 18 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 ;;;;; 257.8 2.8586e-30 484425000.0 468977.0 594378.0 511033.0 554431.0 524329.0 579715.0 560392.0 500893.0 614002.0 551659.0 False True 466452.0799402431 614161.5124209123 582982.004421536 624621.9077529088 591099.1902085334 539640.6665523241 533283.6980546702 538272.1791431176 462689.4343052782 516451.65032096795 0.9031863479385712 1.1891945974792004 1.1288220379569323 1.2094489529943693 1.1445392610153786 1.0449006527851048 1.0325917202960653 1.042250864739397 0.8959007760314499 1.0 18.97827376620438 1.9988323507743153 1.1883847513810573 0.9667065600195932 1.1211831005008541 0.3178100639173138 0.08556218573124856 0.5499648295823788 1.4365019011522255 0.06315087910950178 0.029334925316713847 99.73149993785431 -1.9988323507743153 0.15447654048126092 TLGGLEMELR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLGGLEMELR 10 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ; 131.5 0.00057785 78198000.0 95714.0 174929.0 157633.0 155791.0 162496.0 146987.0 137123.0 137104.0 146540.0 129358.0 False True 95198.68645882512 180751.40601818665 179826.356229402 175514.12462638895 183188.90241074946 136826.1346601803 130489.83662927107 147335.3966800054 110427.18053539799 121102.26169104445 0.7861016394697531 1.4925518606689514 1.4849132767493163 1.4493050928657287 1.5126794483665398 1.1298396309827023 1.0775177507599005 1.216619694980485 0.9118506871252274 1.0 16.885866283316986 2.604962250409989 6.211423639392764 1.0879403196741446 1.3661004499549734 0.2968377944464573 0.21227836768944314 0.31314840682573564 14.533365519479833 0.06859005593385376 0.06444768336575976 402.68203102037506 -2.604962250409989 0.27816013028082875 TLGT(ph)PTQPGSTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLGTPTQPGSTPR 13 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 TLGT(0.979)PT(0.02)QPGSTPR;TLGT(0.999)PT(0.001)QPGSTPR 182.34 0.00012613 719490000.0 545680.0 624570.0 519900.0 561750.0 529970.0 714690.0 596260.0 520750.0 682300.0 594410.0 True False 542742.1195107471 645358.4348894624 593097.4009481908 632867.4924024752 597458.538121707 665285.1624992983 567416.6258656037 559611.0093149197 514156.30735159 556474.2448999957 0.9753229812249147 1.1597274102154362 1.065812850071393 1.1372808323163421 1.0736499372564432 1.1955363048632324 1.0196637689271215 1.0056368546139771 0.9239534660656026 1.0 19.085955391806568 1.9221941807873384 2.926450636390413 0.9753874621834405 1.1026863145511954 0.4546063549060275 0.060979817581468566 0.22345006753434352 3.4453759809952422 0.02961869367981845 0.015976915128294855 83.59767147399134 -1.9221941807873384 0.12729885236775484 TLHCEGTEINS(ph)DDEQESK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLHCEGTEINSDDEQESK 18 0 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 TLHCEGTEINS(1)DDEQESK 132.48 9.4741e-06 1184300000.0 539980.0 425670.0 336710.0 341750.0 411380.0 533040.0 498460.0 406090.0 719030.0 540290.0 True False 537072.8076774175 439838.1686270517 384115.8412642149 385015.5149595828 463766.8045597073 496192.19944119203 474347.58549788455 436394.49788323697 541834.6910083743 505808.2296344591 1.0618111296163626 0.8695749552056852 0.7594100268827384 0.7611887122473837 0.9168826788264506 0.9809887826455168 0.9378012410764635 0.8627667015196916 1.0712255342305346 1.0 18.948230984661045 3.010740466309536 24.772498200246055 0.9509918516059663 0.853938162392708 0.21321876456153654 0.09311773780015858 337.8670828092257 779270.8999113283 0.027996529949612776 0.033432478564246595 1025.0391814002655 -3.010740466309536 -0.0970536892132583 TLHEWCDGCEAVLLGIEQQVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLHEWCDGCEAVLLGIEQQVLR 22 0 J3QT73;A0A087X1P5;J3KQ34;Q9H9Q2-2;Q9H9Q2;J3QT95;J3KQ41;Q9H9Q2-3 J3QT73 COPS7B COP9 signalosome complex subunit 7b 0 122.94 2.501e-05 25666000.0 14432.0 18173.0 14190.0 13633.0 14144.0 19799.0 16433.0 13524.0 16095.0 16133.0 False True 14354.29971554593 18777.877319189523 16187.828658308952 15358.936402177018 15945.154561943946 18430.34173183282 15638.0730098438 14533.229553480513 12128.602911950526 15103.378127843805 0.9504032537650029 1.2432898892050912 1.0718018526243416 1.016920603600732 1.055734314997271 1.2202794352248651 1.0354023369787888 0.9622502615284327 0.8030390823355512 1.0 13.882583648517972 1.6990149681714282 2.8619481070943156 0.8995544706337828 1.0944953684717535 0.39736765643465166 0.09421540223519992 0.2077466988505659 3.78951520227796 0.05546477943891136 0.024573561953338076 50.00517692084347 -1.6990149681714282 0.19494089783797075 TLHNLVIQYASQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLHNLVIQYASQGR 14 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;G5E9S8;E9PQ02;Q9H0B6;Q9H0B6-2;A8MZ87;A8MX29 Q07866-6;Q9H0B6 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 0 ; 100.41 0.0017951 3204700000.0 1811360.0 1658950.0 1587620.0 1691230.0 1404950.0 1795460.0 2006170.0 1638880.0 2286500.0 1858230.0 False True 1801607.8390210131 1714167.1478935487 1811143.0961595813 1905339.5445942797 1583862.0547089335 1671344.0762582219 1909123.8927863662 1761181.5476640142 1723022.7125302826 1739636.170489257 1.0356233502056509 0.9853595694158593 1.0411045291442829 1.0952517410915985 0.9104559226677188 0.9607434615412551 1.0974271087094276 1.012384990344675 0.9904500387835107 1.0 20.73035418004437 -0.28880462577770327 6.762895715175969 0.9999971120520568 1.015456124959985 0.005773611411242663 0.05450706104527974 0.0 0.0 0.05248825690353433 0.012371600796383582 0.5142749542501679 0.28880462577770327 0.015459012907928171 TLHPAVHAGILAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLHPAVHAGILAR 13 0 P31939-2;P31939;C9JLK0 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 122.42 0.00013602 1345600000.0 1939900.0 2491000.0 2003800.0 2258900.0 2791400.0 2877100.0 3593500.0 3061200.0 5396800.0 3948400.0 False True 1929455.7939431523 2573911.4291587044 2285917.622658173 2544876.508389766 3146868.244075954 2678212.848964909 3419668.676496912 3289642.288458634 4066830.953415012 3696409.731604692 0.5219810394519044 0.6963274139096353 0.6184156488695874 0.6884725160825121 0.8513310137590807 0.7245443669477188 0.9251324730747202 0.8899560728703441 1.1002110828361855 1.0 21.817693251671084 2.7010746558321252 0.465114977716585 1.0471061305082912 0.5537478305168405 0.8223739517429584 0.07246516834707338 0.44694293637362326 0.19947398741741834 0.06451286196186523 0.08826098279853067 502.4289503424589 -2.7010746558321252 -0.49335829999145064 TLHPDLGTDK ddPTM_BT-474_Trastuzumab_2h_R1 6 TLHPDLGTDK 10 0 P00338;P00338-3;P00338-4;P00338-2;P00338-5 P00338 LDHA L-lactate dehydrogenase A chain 0 ;;;;; 155.53 1.2544e-05 4807670000.0 10853230.0 8123100.0 7644650.0 6005670.0 5453330.0 11487750.0 10690800.0 7270550.0 12240560.0 9583610.0 False True 10794797.415587215 8393472.472982353 8720950.27151103 6765987.206224786 6147779.251080729 10693628.88175476 10173645.161177997 7813115.3601048365 9224038.003100658 8971975.804858672 1.2031683600552527 0.9355210775799198 0.9720211535555299 0.7541245488603238 0.6852202218101691 1.191892300463377 1.1339358667985455 0.8708355361227939 1.0280943912159777 1.0 23.09699429917129 2.7203754653691608 24.997459564083737 1.0306814730727645 0.906212905095537 0.1628011165284734 0.15115888327368818 1803.841451955281 2479572.0162925967 0.052217315002544624 0.04931978028274066 525.2613739815381 -2.7203754653691608 -0.1244685679772275 TLHPDLGTDKDK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLHPDLGTDKDK 12 1 P00338;P00338-3;P00338-4;P00338-2;P00338-5 P00338 LDHA L-lactate dehydrogenase A chain 0 ;;; 163.99 3.5149e-05 2808120000.0 6811400.0 4242100.0 3665640.0 2951480.0 2935630.0 7137200.0 6421200.0 4754870.0 8656200.0 5689430.0 False True 6774728.179217688 4383295.734096401 4181730.2496859506 3325137.0653779404 3309465.079657774 6643822.163161638 6110582.024633912 5109702.54414063 6522995.497137382 5326325.70643392 1.2719327642757885 0.8229492478842613 0.7851059961719279 0.6242834645581945 0.6213411011760162 1.2473555935823173 1.1472415247255068 0.9593297191661373 1.2246707874544638 1.0 22.344709221809914 2.7330291087073437 24.981379283807158 1.103054411914486 0.8116209127007222 0.37242691633882574 0.18784648798962855 522.5033529935451 2359721.6955032162 0.06223231730944699 0.060223665940656076 540.7905683677775 -2.7330291087073437 -0.2914334992137638 TLHPDLGTDKDKEQWK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLHPDLGTDKDKEQWK 16 2 P00338;P00338-3;P00338-4;P00338-2;P00338-5 P00338 LDHA L-lactate dehydrogenase A chain 0 ;;; 178.85 1.5306e-09 6661950000.0 4342470.0 2533370.0 2352850.0 2155090.0 1897640.0 4583810.0 4557320.0 2906230.0 6076340.0 3748060.0 False True 4319090.624013775 2617691.688995494 2684110.8286611848 2427924.173033642 2139293.205806512 4266942.003828097 4336865.020946962 3123107.6401369176 4578907.425784494 3508855.601924393 1.2309114748538006 0.7460243412581157 0.7649533446714405 0.6919418888888087 0.6096840247952182 1.2160494725083415 1.2359770571831046 0.8900644524739302 1.304957497616386 1.0 21.742569147821158 2.729232464600013 24.988545581344006 1.1122373461263682 0.7963035973009945 0.4123149209154128 0.19060448060857962 690.226292888736 1848996.253585307 0.06166466444347018 0.05885901696881271 536.0835299046145 -2.729232464600013 -0.3159337488253736 TLHS(ph)PPLQLQQR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLHSPPLQLQQR 12 0 B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;A0A2R8YGT1;F8W9A8;Q6PFW1 B7WPL9 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 T(0.001)LHS(0.999)PPLQLQQR;T(0.001)LHS(0.999)PPLQLQQR;T(0.002)LHS(0.998)PPLQLQQR 164.15 3.740800000000001e-05 1439470000.0 528429.0 555130.0 550583.0 510377.0 463165.0 572947.0 575707.0 403145.0 647280.0 537374.0 True False 525583.9969779818 573607.166466829 628100.3006467742 574990.675869867 522146.31735596544 533340.5224621658 547857.8529956881 433229.7270288304 487766.5171076326 503078.3312509724 1.0447359075693958 1.1401945399645361 1.2485139224440809 1.1429446274103574 1.0379026185794524 1.0601540343348568 1.0890110326027467 0.86115759736967 0.9695637573869165 1.0 18.940423525181266 2.335903726011008 1.0764261876572583 0.936481585954489 1.142154397853733 0.518888652098886 0.06995789883619451 0.3792237066714328 0.8597847492257717 0.04801611187616655 0.029621326907736445 216.7223623487237 -2.335903726011008 0.2056728118992439 TLHSDDEGTVLDDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLHSDDEGTVLDDSR 15 0 O00170;E9PMH2 O00170 AIP AH receptor-interacting protein 0 ;;; 249.58 1.3872e-18 4635800000.0 1845670.0 2182010.0 1953310.0 2158570.0 2043160.0 2322730.0 2328510.0 1776320.0 2511510.0 2235290.0 False True 1835733.1177932138 2254636.883797098 2228319.069525118 2431844.7406768315 2303344.315241899 2162165.1422182973 2215871.0755279865 1908878.018370196 1892582.01300981 2092631.878471951 0.8772365252954448 1.0774168677213518 1.0648404492204555 1.1620986785561993 1.100692548430358 1.0332276615212035 1.05889196199478 0.9121900693609175 0.9044027439703258 1.0 20.996887114165368 1.7571588532683557 7.087252070008615 0.932248432718237 1.0602309617785137 0.340899094448478 0.07236735920489802 0.15582388727777655 23.455236446552735 0.035193218851390255 0.01897066904445715 57.16877064567971 -1.7571588532683557 0.12798252906027674 TLHTTASNWLHLIPQTLSHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLHTTASNWLHLIPQTLSHLK 21 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 143.95 4.5975e-08 30850000.0 24493.0 34072.0 35108.0 29923.0 31951.0 37530.0 39131.0 25057.0 42015.0 37488.0 False True 24361.132409428123 35206.065923041046 40050.90123579354 33711.24873192568 36019.77046158592 34935.63943611726 37238.08403506346 26926.880576867883 31660.96622215605 35095.48374490847 0.6941386699923277 1.003150894825566 1.1411981532126334 0.9605580301145269 1.0263363435419675 0.9954454450620187 1.061050598582099 0.7672463150126643 0.9021379061842768 1.0 15.098997769109658 -1.332552056463744 6.418275579887844 1.0000024705069241 0.9525046561596052 0.013408632722679226 0.12685536270045022 4.563671187890828e-06 4.7469433112081544e-07 0.12500838836646347 0.029463227211737896 0.04649946365055676 1.332552056463744 -0.04749781434731892 TLIEFLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLIEFLLR 8 0 P28838-2;P28838 P28838-2 LAP3 Cytosol aminopeptidase 0 120.46 0.0034851999999999995 94318000.0 68563.0 81937.0 85119.0 71953.0 66624.0 76661.0 85102.0 68157.0 106080.0 80634.0 False True 68193.8644260654 84664.22351303745 97103.01533238894 81062.2424224927 75108.17148861376 71361.60551058313 80985.29113878953 73243.22143423336 79938.00539917439 75487.86908575936 0.9033751416216627 1.121560649921819 1.2863393351595778 1.0738446243647501 0.9949700845745926 0.9453387196492656 1.0728252382748376 0.9702647898435717 1.058951674849364 1.0 16.203957201259154 3.392809422875034 5.214372059912249 1.005650104013093 1.11674197125772 0.1796358041370102 0.09323385610627775 0.3080964748120663 14.211500121023267 0.02631706129494153 0.03603971452820265 2470.639740857155 -3.392809422875034 0.11109186724462705 TLIGHVPDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLIGHVPDQR 10 0 Q16822;Q16822-3;H0YML5;H0YM31;Q16822-2;H0YNG4;H0YMA5 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 ; 112.75 0.0015796 535730000.0 221660.0 308310.0 321370.0 285880.0 369420.0 475910.0 235750.0 257320.0 333310.0 300740.0 False True 220466.60718874115 318571.911972669 366616.1026018853 322072.37868806307 416463.4472761121 443011.4618716382 224345.871847543 276522.5250444842 251170.21662517724 281546.51572353207 0.7830557114946893 1.1315072081570154 1.3021510909475729 1.143940204198179 1.4791994360358673 1.5734929652145244 0.796834126222475 0.9821557348485135 0.8921091279702315 1.0 18.103013771377242 2.2113649001955755 24.999963042264483 0.9190787715602785 1.2407655910184718 0.3612003828330289 0.20696274740345832 255.13829619365683 234537.17295131614 0.08147695446300411 0.060189509906786315 162.6915138113842 -2.2113649001955755 0.32168681945819333 TLKPEEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLKPEEQR 8 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 96.034 0.008415700000000002 1149550000.0 2058160.0 2013100.0 1898160.0 1762100.0 1699030.0 2255700.0 2337100.0 1945520.0 2850400.0 2255900.0 False True 2047079.0952430742 2080104.8165553545 2165404.4288975154 1985181.6793278165 1915391.3995602124 2099768.768346649 2224045.544411001 2090704.581550383 2147957.1134031564 2111926.5306268437 0.9692946537470117 0.9849323763824094 1.0253218554221197 0.9399861456063967 0.9069403560130961 0.9942432835120519 1.053088501024171 0.9899513790992711 1.0170605285050416 1.0 21.01012821664178 2.4827184272705245 24.99205026754908 1.014315984407349 0.9665425082709861 0.3477682639332733 0.032199149252141755 318.2956748368433 1421235.7884343183 0.011633752694872483 0.01002466731281893 303.8914121541053 -2.4827184272705245 -0.04777347613636296 TLLADKGEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLLADKGEIR 10 1 Q9BTC8;F6RRE2;E7EV10;E7EQY4;Q9BTC8-2;E9PCS8;E7ESY4;Q13330-3;Q13330;Q13330-2 Q9BTC8;E7ESY4 MTA3;MTA1 Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 0 78.342 0.027625 306780000.0 535650.0 573230.0 574730.0 457250.0 469440.0 594700.0 589900.0 493270.0 844080.0 652510.0 False True 532766.1199163102 592309.6140251481 655646.9883572876 515137.80311710155 529220.4014111261 553589.7887732189 561364.2833631629 530080.3121743078 636067.7940925261 610866.2531580828 0.8721485548792274 0.9696224189223094 1.0733069390684056 0.843290655612288 0.8663441443607984 0.9062373079397436 0.9189643075894232 0.8677518350929939 1.041255415247045 1.0 19.220497016465256 1.2294473343146128 24.99876073331376 1.0206277636776948 0.9153710666845807 0.306697926495038 0.0636940393766892 275.6579828658888 756133.4905716818 0.06017464490179518 0.01589835251169073 16.960839104042574 -1.2294473343146128 -0.10525669699311413 TLLDQHGQYPIWMNQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLLDQHGQYPIWMNQR 16 0 Q9BRT6 Q9BRT6 LLPH Protein LLP homolog 0 ; 168.41 5.9848e-09 862320000.0 906550.0 951440.0 996650.0 987510.0 972400.0 1029360.0 981620.0 973880.0 1169120.0 1054460.0 False True 901669.2355271743 983108.1052423747 1136969.6569629032 1112528.6647483173 1096229.3761336461 958202.7660528013 934135.290447446 1046555.8708624374 881006.04140538 987163.460031376 0.9133940548189615 0.9958919115696682 1.1517541957304271 1.1269953860660085 1.110484150313671 0.9706627168132275 0.9462822807661008 1.060164717633667 0.8924621676914359 1.0 19.912929468390146 2.7229460829212013 24.241407726383414 0.9821417084332418 1.0650111444160066 0.23898139803062401 0.07554204494652005 902.9267535423053 1401782.2946119255 0.025978506116096433 0.024572864889263895 528.3796500765511 -2.7229460829212013 0.08286943598276486 TLLEEEYFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLLEEEYFR 9 0 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;P52701-4 P52701 MSH6 DNA mismatch repair protein Msh6 0 ; 172.21 0.00013112 265880000.0 253150.0 296960.0 269230.0 276880.0 247470.0 273330.0 317580.0 248370.0 356770.0 321920.0 False True 251787.06852760905 306844.1340838892 307135.24381088925 311932.97961085424 278983.8376303922 254435.3404496115 302217.44212658633 266904.63059730513 268848.8139730721 301374.7899904217 0.8354616142100385 1.0181479814341516 1.0191139206456208 1.0350334200839033 0.9257039636236957 0.8442489182910687 1.0027960272861292 0.8856236137262441 0.8920746621892849 1.0 18.20119921493941 3.086368173407995 10.332173603127497 0.9181391851569588 0.9827946675116036 0.11239052235153857 0.06933246128190425 0.6688232842510942 74.91317611869988 0.019524751389606416 0.023348810246142333 1220.0234362460171 -3.086368173407995 0.0646554823546448 TLLEGSGLESIISIIHSSLAEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLLEGSGLESIISIIHSSLAEPR 23 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 218.72 2.1958e-32 5339100000.0 95741.0 197171.0 264370.0 270670.0 238320.0 285400.0 243640.0 199381.0 213383.0 234850.0 False True 95225.5410938251 203733.71754261377 301590.99805476627 304936.79424757947 268668.63936669106 265670.9697593352 231854.20240481608 214259.82265620382 160797.6188357092 219861.6719347995 0.43311569613672574 0.9266449934167311 1.3717306677455077 1.3869484006198642 1.2219894309107473 1.2083550871846394 1.0545457985672602 0.9745210284753183 0.7313581190422045 1.0 17.746236598279037 1.6213785159895258 2.8433016209920847 0.8639094298829443 1.1144608681541786 0.09380678562193445 0.2647655535427848 0.502586249086133 9.471468107972404 0.18657229899651634 0.0758056059356707 41.81946918285333 -1.6213785159895258 0.2505514382712343 TLLEQLDDDQ ddPTM_BT-474_Trastuzumab_2h_R1 2 TLLEQLDDDQ 10 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ; 297.92 5.5971e-32 66578000.0 170588.0 208471.0 170465.0 193554.0 190912.0 194191.0 195067.0 165284.0 209273.0 197369.0 False True 169669.5731621085 215409.83121161954 194464.9902916587 218057.9165544615 215223.5115759222 180767.03324644404 185630.8639816953 177618.33137514567 157700.47326453068 184772.74144389803 0.9182608421363102 1.165809575201999 1.0524549712907922 1.1801411552941088 1.1648012033272226 0.9783208921069657 1.004644205260427 0.9612799484770072 0.8534834306845676 1.0 17.495392413634878 2.6212003695614863 5.677785524984612 0.9590101894790222 1.1020091717340201 0.4174236071716617 0.08084821706917532 0.224141144274253 9.631479935679575 0.025930871612278958 0.02436485520051777 418.02318466935964 -2.6212003695614863 0.14299898225499796 TLLIS(ph)SLSPALPAEHLEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 T(0.058)LLIS(0.314)S(0.314)LS(0.314)PALPAEHLEDR 59.81399999999999 0.043599 23106000.0 9536.6 7057.6 7157.9 6181.5 9168.4 7352.2 7875.0 7221.1 11352.0 8452.7 True False 9485.25600521587 7292.507949590712 8165.670102417868 6964.077266196529 10335.941394635669 6843.959719217192 7494.056164578584 7759.97515000282 8554.451709006678 7913.241449279447 1.1986562101020644 0.9215576191289783 1.0318995262253001 0.8800536810147066 1.306157718159456 0.8648743707725967 0.9470273607360947 0.9806316665226255 1.0810300385546328 1.0 12.950053062152028 TLLISSLS(ph)PALPAEHLEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TLLIS(0.026)S(0.026)LS(0.948)PALPAEHLEDR;T(0.001)LLIS(0.023)S(0.026)LS(0.95)PALPAEHLEDR;TLLISSLS(1)PALPAEHLEDR 266.46 1.0419e-31 155368000.0 89394.0 101243.0 80563.0 98185.0 93030.0 94898.0 100335.0 88896.0 111623.0 98139.0 True False 88912.71263660712 104612.81205231413 91905.57013385082 110615.2109328652 104876.8190679895 88337.9246258635 95481.41273307844 95529.87092474152 84115.00732156898 91875.68499897505 0.9677502011288298 1.1386343628728446 1.0003252779544023 1.203966108487781 1.1415078871973525 0.9614940517379433 1.0392457235463726 1.0397731557136933 0.9155306686693803 1.0 16.48739548074979 2.7358927386180185 24.980553402905148 1.001468459730511 1.0944154033503735 0.31197586895975205 0.07276756854709786 311.43907001018715 2916136.8580827713 0.022805109016561523 0.022407947677989815 544.3681890217065 -2.7358927386180185 0.09294694361986244 TLLIVSHDQGFLDDVCTDIIHLDAQR ddPTM_BT-474_Trastuzumab_2h_R1 5 TLLIVSHDQGFLDDVCTDIIHLDAQR 26 0 Q8NE71;Q8NE71-2;H0YGW7 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 ;;;; 271.51 9.631999999999999e-61 1324626000.0 326600.0 340398.0 318434.0 335615.0 353177.0 374661.0 351248.0 303117.0 409167.0 357953.0 False True 324841.6218886714 351727.94165506377 363266.73932205426 378103.824588619 398151.9975059165 348761.5669271285 334256.7923423364 325737.12973693846 308333.27540690027 335108.1330810183 0.9693635869175853 1.0495953602237023 1.0840284178785602 1.1283039331582136 1.1881299145003332 1.040743367582813 0.9974595043968209 0.9720358820959615 0.9201008419940535 1.0 18.35426717564128 2.2522364856932358 2.7636761558454 0.9663813738020973 1.0860922489127096 0.4689668305454102 0.055932735593345335 0.24738948144616385 3.8898403375697566 0.024917920787631054 0.018146536826891685 178.74606330347646 -2.2522364856932358 0.11971087511061229 TLLS(ph)PSSIK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLLSPSSIK 9 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 TLLS(0.983)PS(0.016)SIK;TLLS(0.666)PS(0.272)S(0.063)IK;TLLS(0.99)PS(0.008)S(0.002)IK;TLLS(0.974)PS(0.026)SIK 170.89 6.0174e-05 1180450000.0 1890230.0 2020060.0 1936380.0 1749810.0 1777900.0 2124260.0 2140770.0 2181180.0 2755920.0 2160650.0 True False 1880053.2117042977 2087296.475947941 2209005.4726833175 1971335.7665879405 2004305.0265610968 1977414.9061701675 2037212.7765644323 2343950.727407616 2076760.4434360182 2022755.46717447 0.9294515536919996 1.0319074696970794 1.0920773709582479 0.9745793787627942 0.9908785609962305 0.977584754192934 1.0071473342302504 1.1587909490027555 1.0266987172389088 1.0 20.947890490990908 1.9506839842728607 24.56651883767388 1.0803473542507216 1.0026504822392113 0.17985808162220762 0.05590469544746061 388.98000577585657 193767.52399993132 0.022767883889645558 0.014690250995586443 89.26557036625225 -1.9506839842728607 -0.07769687201151032 TLLSDPTYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLLSDPTYR 9 0 P31948;P31948-2;P31948-3;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 119.41 0.0019363 641430000.0 1228590.0 1477980.0 1350770.0 1433860.0 1357280.0 1424670.0 1527060.0 1330190.0 1709870.0 1513770.0 False True 1221975.4079491815 1527173.6708422243 1540946.6748966873 1615386.5289830216 1530121.5627711578 1326185.9162124484 1453190.2738643012 1429455.5323679557 1288495.449584147 1417159.9025963016 0.8622706624075849 1.0776297495041824 1.0873484862742748 1.1398759773145992 1.0797098901598228 0.9358054188400443 1.0254243513395984 1.0086762472951203 0.9092096433321071 1.0 20.43457112057054 2.751096855098355 24.81447986574889 0.9831763391884281 1.058075474018713 0.18377392417437222 0.07561179033244435 1232.538881389992 2439711.0167675978 0.023479560155515444 0.024742456410994637 563.7633706823545 -2.751096855098355 0.07489913483028499 TLLSESSSQS(ph)SKSPSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 TLLSES(0.013)S(0.011)S(0.066)QS(0.39)S(0.281)KS(0.204)PS(0.031)LS(0.002)S(0.002)K 97.253 0.00069405 369590000.0 100870.0 91715.0 85031.0 83687.0 90136.0 111880.0 115550.0 113800.0 187330.0 116690.0 True False 100326.92712771054 94767.67833211174 97002.6256972988 94281.76561937868 101614.28532207149 104145.9989371915 109960.40505613403 122292.33386469095 141165.03159339508 109242.74429666491 0.918385269187836 0.8674963169613903 0.8879548598108609 0.8630483079346902 0.9301696508659907 0.9533447700139018 1.0065694135028336 1.1194549775551952 1.2922142564456314 1.0 16.737177936177908 2.0135536403959535 1.5722612019151743 1.157911708933746 0.8924911953047557 0.6940719936993895 0.06989299650236079 0.19622883942058714 0.9066975220073331 0.043086100397249916 0.0211162010845297 103.17004985251242 -2.0135536403959535 -0.26542051362899033 TLLSESSSQSSKS(ph)PSLSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 TLLSES(0.001)S(0.008)S(0.007)QS(0.026)S(0.36)KS(0.59)PS(0.008)LSSK;TLLSESSSQSS(0.006)KS(0.92)PS(0.074)LSSK 217.29 2.2003e-19 1333050000.0 706960.0 698270.0 662898.0 616472.0 659458.0 781610.0 767300.0 654180.0 1102420.0 872020.0 True False 703153.8059106397 721511.4948368714 756228.2763872921 694517.2919917019 743436.067386201 727579.140412033 730182.7676293531 702998.233458732 830743.3626711721 816366.9370261166 0.8613207787078041 0.8838078345813621 0.9263337870371143 0.8507415728051263 0.9106641066263779 0.8912403325182151 0.8944296179966358 0.8611302118868664 1.0176102497455695 1.0 19.638858228641876 1.2341601760576455 24.99999873095799 1.008805202049659 0.885472875000405 0.8319217431382812 0.02226587604492826 41.049175884779956 233195.8344032892 0.01808340826550405 0.005130021743896339 17.1458956412002 -1.2341601760576455 -0.12333232704925401 TLMELLNQMDGFDTLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLMELLNQMDGFDTLHR 17 0 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 ; 226.67 1.9999000000000004e-15 2622400000.0 501540.0 608670.0 539510.0 575480.0 581920.0 654950.0 563070.0 512540.0 657980.0 581400.0 False True 498839.76436633297 628929.2130012149 615468.3184950146 648335.7089947056 656024.0626899336 609674.8480864646 535832.1529637156 550788.3374253849 495829.64548028586 544294.5542384179 0.9164886190425225 1.155494222941875 1.1307633223635385 1.1911486233807043 1.2052739781823625 1.1201193238825022 0.9844525336349489 1.0119306414815286 0.9109583067096003 1.0 19.054028076157486 2.245772730577441 5.7373436355942955 0.980923741235079 1.1297683258506717 0.43973767091156957 0.07864719846658783 0.15194269344783848 16.788890795197226 0.028874855411799603 0.02274513273541702 176.1054232904516 -2.245772730577441 0.1488445846155927 TLMLPLTEGS(ph)LR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLMLPLTEGSLR 12 0 Q7L4E1;Q7L4E1-3 Q7L4E1 FAM73B Protein FAM73B 1 TLMLPLT(0.002)EGS(0.998)LR;TLMLPLT(0.002)EGS(0.998)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR 155.08 6.856600000000001e-05 132817000.0 228416.0 226091.0 249195.0 242951.0 279097.0 322579.0 203768.0 209180.0 291269.0 255710.0 True False 227186.23363540345 233616.30226010463 284279.48995823134 273708.5716896726 314638.348612477 300279.8729992877 193910.96337064743 224790.07379451755 219489.6577546393 239390.36887565505 0.9490199405365772 0.9758801214824577 1.1875143151890657 1.1433566562230548 1.3143316921655588 1.2543523551495093 0.8100199029785083 0.939010515963066 0.916869207334934 1.0 17.86900558555351 2.2365965006820274 24.999998467229435 0.9107310769334249 1.1406567299837274 0.477222006419452 0.11318913017908841 48.58377432297251 618377.7356800478 0.0450748182318506 0.034973608398491916 172.42351752997146 -2.2365965006820274 0.22992565305030244 TLNAET(ph)PKS(ph)SPLPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 T(0.01)LNAET(0.99)PKS(0.674)S(0.326)PLPAK;T(0.001)LNAET(0.999)PKS(0.676)S(0.324)PLPAK 123.55 0.00023383 1718890000.0 4878400.0 2437750.0 2621600.0 2378020.0 2380780.0 3979760.0 3358690.0 3549130.0 6785000.0 3632630.0 True False 4852135.236441194 2518889.035099003 2990698.4926443077 2679077.088176113 2683958.2210113727 3704648.558547351 3196217.333258219 3813984.1027169693 5112927.664341997 3400792.4433489856 1.4267660603429755 0.7406770854320313 0.8794122377251488 0.7877802402835994 0.7892155330621416 1.0893486210229102 0.9398448704239921 1.1214986407582952 1.503451842332065 1.0 21.697439527710813 1.5755231830081184 3.740757561993641 1.2681708144800024 0.9329598056033908 0.23204059116962295 0.21916834960387896 0.22490392414050014 7.197567257517748 0.1298267018254792 0.0546924538751985 37.629043843469034 -1.5755231830081184 -0.3352110088766116 TLNAET(ph)PKSS(ph)PLPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 T(0.047)LNAET(0.953)PKS(0.206)S(0.794)PLPAK;T(0.012)LNAET(0.988)PKS(0.087)S(0.913)PLPAK 128.74 0.00016074 2060620000.0 2522780.0 1329060.0 1240450.0 1155910.0 1204490.0 1883860.0 1765310.0 1751840.0 3197500.0 1720160.0 True False 2509197.6327872067 1373296.9586662648 1415094.5778153148 1302248.0874818761 1357874.66192844 1753633.1923294412 1679915.2111609182 1882571.196463272 2409518.9693048657 1610377.9160969302 1.5581421029845866 0.8527793041242903 0.8787344657861905 0.8086599266327076 0.8432024857988106 1.0889575513924823 1.0431807306650884 1.1690244740973945 1.4962444189155377 1.0 20.61896786244625 1.7272014330894334 2.3916348268239402 1.2644222087009842 0.9808721944389177 0.14392709379509516 0.2339057156600998 0.428739127229997 5.150204038738821 0.14846381265176403 0.06425136169742336 53.35823225636077 -1.7272014330894334 -0.2835500142620665 TLNAETPKSS(ph)PLPAK ddPTM_BT-474_Trastuzumab_2h_R1 5 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 TLNAETPKS(0.035)S(0.965)PLPAK;TLNAETPKS(0.296)S(0.704)PLPAK;TLNAETPKS(0.204)S(0.796)PLPAK;TLNAETPKS(0.048)S(0.952)PLPAK;TLNAETPKS(0.054)S(0.946)PLPAK 201.18 3.9637e-09 4300180000.0 3625470.0 3183470.0 3223730.0 3004800.0 3354740.0 4377800.0 4422740.0 3923210.0 6565210.0 4513310.0 True False 3605950.872347586 3289429.874501748 3677603.162836528 3385207.3719109157 3781946.2538981787 4075172.990232721 4208795.169692483 4215979.8518567225 4947301.964806883 4225266.691760905 0.8534256262164565 0.778514142294497 0.8703836777942802 0.8011819416066517 0.895078708587275 0.9644771058307726 0.996101660967214 0.9978020701220371 1.17088513594986 1.0 22.010610974088962 2.526149731814821 0.947474510538179 1.0623379792212202 0.8184162846181898 0.7834309179719259 0.05165030772641814 0.24244242127804458 0.4431899050705776 0.0320734068439206 0.02384081113219425 335.8533865386648 -2.526149731814821 -0.24392169460303037 TLNDELEIIEGMK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLNDELEIIEGMK 13 0 P10809;E7EXB4;E7ESH4 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 200.21 2.5987e-07 75673000.0 201159.0 179286.0 186716.0 159066.0 196789.0 336640.0 192887.0 176085.0 287840.0 222950.0 False True 200075.9822948661 185253.42612932448 213003.9898354343 179203.73929059558 221848.91269021414 313368.86916532123 183556.31891010408 189225.35684151266 216905.68885839358 208721.14012290208 0.9585803439797932 0.8875642688624688 1.020519482166542 0.8585797259686985 1.0628962287173307 1.5013758020907657 0.8794332898048559 0.9065941127481881 1.039212840302962 1.0 17.671217204335154 3.2152000632187443 24.21895292008033 1.0570704169557021 0.9345582320122595 0.13530480724712635 0.16467021269749596 398.1126910750865 412739.94495867245 0.05155433623172341 0.06165991438633007 1641.3457056271359 -3.2152000632187443 -0.12251218494344263 TLNDELEIIEGMKFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLNDELEIIEGMKFDR 16 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 0 ; 173.28 3.9007e-09 137946000.0 102076.0 178567.0 151448.0 180502.0 201435.0 266280.0 177927.0 146721.0 350910.0 227600.0 False True 101526.43415770966 184510.49464896915 172770.56199038576 203353.53469271288 227086.55325121427 247872.6903556967 169319.99126285373 157670.0660541417 264432.9324530946 213074.37314183635 0.47648355201367637 0.8659440923294272 0.810846276081161 0.9543781905548415 1.065761921073683 1.1633153565149588 0.7946520680370285 0.7399766744787564 1.2410358343613221 1.0 17.700997562327828 5.025243254357862 1.215918341383651 0.9605684422307809 5.662924372135857e-15 0.49919389186478713 0.1501194002461046 2.616975957336613 2.0894001016393555 0.04522760546004438 3.7264728360700428 105984.71940576861 -5.025243254357862 -0.9605684422307752 TLNEWDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLNEWDSR 8 0 O15371-2;O15371;O15371-3 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ;; 146.27 0.0012934 2205430000.0 702010.0 835370.0 796870.0 878990.0 799400.0 790840.0 788240.0 775770.0 931040.0 842480.0 False True 698230.4561606428 863174.7854581717 909062.3694817942 990270.0438751243 901198.8515849818 736171.0922371164 750109.8198307834 833661.8966802408 701597.6672968268 788712.2051165841 0.8852791317682643 1.09441033099086 1.152590721412027 1.255553086982782 1.1426206488737807 0.9333836695582753 0.9510564372715715 1.0569912463279458 0.8895483837391862 1.0 19.589139442617828 2.7425331343981245 24.964162130682542 0.9756667756168388 1.1163286645429995 0.3419816095666206 0.0960570836063629 415.6188830627154 2611842.925001938 0.03132659873595722 0.032099222820306944 552.7555786961094 -2.7425331343981245 0.14066188892616072 TLNMTT(ph)SPEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLNMTTSPEEK 11 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 1 TLNMT(0.054)T(0.793)S(0.153)PEEK;TLNMTT(0.521)S(0.479)PEEK 251.85 2.5353000000000003e-19 1328350000.0 3535900.0 2999660.0 2712360.0 2596970.0 2583390.0 3661630.0 3620600.0 3358170.0 4967800.0 3431310.0 True False 3516863.107275425 3099501.869767237 3094236.711744247 2925746.135726667 2912369.403547817 3408510.1366498773 3445457.745964858 3608773.697841735 3743552.25510953 3212320.858107712 1.094804430385298 0.9648792902938925 0.9632402391979532 0.9107888859676806 0.9066246904312703 1.061073998273552 1.072575841005646 1.1234163264648358 1.1653730808555505 1.0 21.615184570922235 2.5426697206812747 4.246379183805258 1.0993535333656193 0.9646767719750644 0.4659004614116038 0.062408087396340815 0.18648088181400305 6.595900913666072 0.02140360738771057 0.01958710527831937 348.87489652074265 -2.5426697206812747 -0.13467676139055484 TLNMTTS(ph)PEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLNMTTSPEEK 11 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 1 TLNMTT(0.012)S(0.988)PEEK;TLNMTT(0.005)S(0.994)PEEK;TLNMT(0.001)T(0.497)S(0.502)PEEK;TLNMTT(0.024)S(0.976)PEEK 279.68 2.7095e-27 2899630000.0 6295790.0 5358140.0 4679970.0 4685730.0 4879070.0 6657300.0 6550120.0 6025360.0 8932300.0 6213130.0 True False 6261894.166168026 5536482.450835979 5338869.096971537 5278942.937561284 5500390.643986418 6197096.5205985475 6233265.671711683 6475002.959358121 6731054.35168783 5816602.72407179 1.0765552442241608 0.9518412574273735 0.9178672414529583 0.9075646366073066 0.9456362940558514 1.0654151253879 1.0716333859136622 1.1131932618608396 1.1572140424567103 1.0 22.471745340296955 2.6387913372181564 3.4317568797552216 1.0939400518010574 0.9538753599971793 0.5306084852784478 0.05694481502963302 0.18349257473734729 4.070271314741042 0.01955768638076181 0.018409732353468912 435.3026762509525 -2.6387913372181564 -0.14006469180387804 TLNPS(ph)PAGWFVQQHPELELMSSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLNPSPAGWFVQQHPELELMSSFR 24 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 T(0.005)LNPS(0.995)PAGWFVQQHPELELMSSFR;TLNPS(1)PAGWFVQQHPELELMSSFR 297.94 3.1233999999999982e-62 2060200000.0 310210.0 376830.0 369610.0 337690.0 410530.0 395800.0 418960.0 335840.0 434010.0 389160.0 True False 308539.8638275711 389372.55875145504 421647.875292288 380441.5193758642 462808.5620980518 368439.27761298226 398693.304217377 360902.08616096515 327054.05093604524 364323.47562336177 0.8468843883849531 1.0687550619274093 1.15734478699415 1.0442410243394946 1.2703231964566128 1.0112971089293061 1.0943387700592393 0.9906089239609317 0.8977023793936196 1.0 18.47486043431085 1.5912116438730866 3.883453163246535 0.9470833034318766 1.0780135215321536 0.18687345218246343 0.10398828548386609 0.2711925761944121 9.387650749522024 0.06214824485092362 0.026863882202404633 39.01320626465421 -1.5912116438730866 0.13093021810027694 TLNQQLTNHIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLNQQLTNHIR 11 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4;K7EMQ3 P50570-2 DNM2 Dynamin-2 0 107.17 0.0017261 0.0 511840.0 563140.0 430010.0 450540.0 533320.0 583720.0 516930.0 588770.0 741300.0 630150.0 False True 509084.31031077047 581883.7744746816 490551.67028607737 507578.3178050934 601235.1407647026 543368.8103290793 491924.12103563343 632707.0071134819 558616.5479110854 589933.2875014428 0.8629523390126131 0.9863552147381723 0.8315375325974932 0.8603995206896203 1.019157849714036 0.9210682323596637 0.8338639833651196 1.0725060282548209 0.9469147779014236 1.0 19.170192291228922 1.7357153020453546 24.999999999930093 1.0084066804696237 0.9063275249097827 0.3501109490088393 0.06492176738555677 0.3910709941769134 3380.855046451289 0.02949717767960606 0.016357673289463713 54.41458258540201 -1.7357153020453546 -0.10207915555984093 TLPAHSDPVSAVHFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLPAHSDPVSAVHFNR 16 0 P61964 P61964 WDR5 WD repeat-containing protein 5 0 ; 210.34 5.7504e-12 494210000.0 199327.0 304290.0 288270.0 316100.0 305480.0 271080.0 268370.0 219930.0 321080.0 275170.0 False True 198253.84557931143 314418.1087028105 328855.9103122422 356118.2275895373 344381.0672781842 252340.8776536813 255387.91782704202 236342.29338191115 241954.13625157345 257608.4150151103 0.7695938254489187 1.2205273212226702 1.2765728568802879 1.382401376789841 1.3368393546382564 0.9795521533676605 0.9913803390780614 0.9174478767242453 0.9392322694015308 1.0 17.97482019561558 2.6483548328829243 6.950095147338007 0.9571999928183035 1.2127693860427151 0.3470849298286691 0.15807656364641504 0.28743479621329304 19.048314852737324 0.05320153732827894 0.05010643692057912 444.99469429160973 -2.6483548328829243 0.25556939322441163 TLPENLTLEDAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLPENLTLEDAKR 13 1 Q92830-2;Q92830 Q92830-2 KAT2A Histone acetyltransferase KAT2A 0 60.49 0.059346 690160000.0 157580.0 814220.0 872460.0 1428300.0 1188800.0 442950.0 528280.0 224660.0 25418.0 248610.0 False True 156731.606788784 841320.8204936172 995294.7844417344 1609122.6335531003 1340186.6334303578 412329.90909214306 502725.0781744224 241425.27000036475 19154.074483750137 232743.49695427064 0.6734091772264579 3.6147984003992155 4.27635915703926 6.913716836819979 5.758213015479772 1.77160657327907 2.1599962394360586 1.0373018931128284 0.08229692659259787 1.0 17.828381332691805 2.594320386762748 5.197000739104064 1.2021456567056201 4.352938048241016 0.4826847777800053 1.5788903755039494 0.21735700312692854 8.427209340925613 0.5627986100745187 0.5268675221160475 392.9347034215706 -2.594320386762748 3.1507923915353953 TLPLTGSTFHDQIAMLSHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLPLTGSTFHDQIAMLSHR 19 0 P55265-5;P55265;P55265-4 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 ; 249.14 3.2241e-25 2719900000.0 675340.0 967450.0 909720.0 935080.0 984700.0 957640.0 949590.0 744310.0 1099110.0 960470.0 False True 671704.044477328 999650.988414126 1037800.6685720097 1053461.0321240874 1110095.7082258333 891440.6008420824 903654.7039139278 799854.1917295973 828249.067819443 899171.9823002627 0.7470251049848928 1.111746148781035 1.15417371648648 1.1715901438889615 1.2345755095548967 0.9914016655207585 1.0049853884483784 0.8895452788502256 0.9211241943956209 1.0 19.778237557119528 2.327427603816499 2.5770909428800377 0.9349572548336654 1.0938895672259683 0.17633609712796916 0.1277459114942319 0.4219810264501147 5.742333063655889 0.05298118369210287 0.040309232249093434 212.53360256283003 -2.327427603816499 0.15893231239230288 TLPQQES(ph)LEIELAEEKPVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLPQQESLEIELAEEKPVK 19 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 TLPQQES(1)LEIELAEEKPVK;TLPQQES(1)LEIELAEEKPVK 176.09 7.9689e-13 508910000.0 648850.0 461430.0 375110.0 361640.0 409280.0 492990.0 485850.0 412710.0 559500.0 488480.0 True False 645356.6636940127 476788.41860967525 427922.22748543165 407423.58692021575 461399.3820073829 458910.7616736333 462347.57937276264 443508.5158989162 421618.72191589425 457304.7881912318 1.4112178143740384 1.0426053496957832 0.935748407922829 0.8909235097486949 1.0089537523373555 1.0035118230201647 1.0110271996089883 0.9698313408287639 0.9219643721280814 1.0 18.802796499340666 4.7304475902889624 3.1480089162565212 0.9693876994753201 1.4732396580073113 0.9204584740160766 0.03890822235301203 0.0877179295107502 1.3605586745403864 0.010033095190956189 0.10810497478731784 53758.55545551861 -4.7304475902889624 0.5038519585319912 TLPQQES(ph)LEIELAEEKPVKR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLPQQESLEIELAEEKPVKR 20 2 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 TLPQQES(1)LEIELAEEKPVKR;TLPQQES(1)LEIELAEEKPVKR;TLPQQES(1)LEIELAEEKPVKR;TLPQQES(1)LEIELAEEKPVKR 271.04 1.1306e-44 3339460000.0 2111450.0 1879430.0 1506520.0 1648250.0 1605560.0 1940750.0 2005740.0 1785700.0 2677290.0 2084640.0 True False 2100082.1878041504 1941985.6914105744 1718624.9210934178 1856918.2810011192 1810018.5491003047 1806590.520534093 1908714.6935291258 1918958.0016008697 2017507.7533479985 1951596.490449904 1.0760842203195475 0.9950754169284687 0.8806251340907162 0.9514867904753412 0.9274553207886939 0.925698795511575 0.9780273242288458 0.9832760055632658 1.0337729972464236 1.0 20.896223363308934 1.5878427031857434 2.279925854135867 1.0155428796303054 0.956306189223305 0.15493451021334914 0.04944323358194742 0.4891584218772048 5.548990496611289 0.03858292223531763 0.01418439473069496 38.71174097437797 -1.5878427031857434 -0.059236690407000414 TLPS(ph)GSPRPGQLERPTSLALDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 T(0.084)LPS(0.458)GS(0.458)PRPGQLERPTSLALDSR 56.854 0.044954 213160000.0 201240.0 227170.0 201230.0 190670.0 203240.0 239070.0 234150.0 189990.0 233390.0 218100.0 True False 200156.54619986584 234731.21612283503 229561.43487748495 214808.8024501645 229121.4093021413 222543.65361024675 222823.26996013668 204168.01854967204 175874.16176577413 204180.67127519555 0.9802913515260905 1.14962505832133 1.124305417568547 1.0520525821988522 1.1221503380862654 1.0899349689682503 1.0913044245006647 0.9999380317174761 0.8613653812937573 1.0 17.639486774661997 1.5639880310631942 3.470682284205052 0.9295358418971267 1.0908983084200559 0.5752361873906023 0.05426345828505786 0.1219803240693856 3.344330588451599 0.03267722677051282 0.013277593559269671 36.642747595231356 -1.5639880310631942 0.16136246652292918 TLPSGS(ph)PRPGQLERPTSLALDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 T(0.007)LPS(0.165)GS(0.828)PRPGQLERPTSLALDSR;T(0.001)LPS(0.149)GS(0.85)PRPGQLERPTSLALDSR 162.44 8.6696e-12 1498110000.0 773630.0 899250.0 894600.0 955180.0 865590.0 1040800.0 950820.0 850550.0 1042770.0 986670.0 True False 769464.8620383731 929180.9926418966 1020551.9039974051 1076105.6900631892 975817.755746116 968851.9457796648 904825.2041148716 914022.3600053857 785793.3059021229 923699.8758693142 0.8330247541867567 1.0059338719380297 1.1048522692903269 1.16499494930693 1.0564229586236034 1.0488817537924393 0.979566228980296 0.9895230949827499 0.8507019719609636 1.0 19.817064648665266 1.8062229534664676 1.7858073347957715 0.9322865268630106 1.0432103623244626 0.16845050309051435 0.08860325061273512 0.58071960582132 3.5740858463677316 0.06448087524755763 0.02751620060981295 64.00633400403098 -1.8062229534664676 0.11092383546145201 TLQRLSS(ph)GFDDIDLPSAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLQRLSSGFDDIDLPSAVK 19 1 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 TLQRLS(0.049)S(0.951)GFDDIDLPSAVK 168.25 9.9399e-12 268960000.0 118120.0 160350.0 146200.0 200470.0 159340.0 223910.0 244500.0 175610.0 349000.0 243450.0 True False 117484.05504436587 165687.15281637802 166783.68920681952 225849.48144534786 179631.00451782742 208431.62872744503 232672.60091929729 188714.90992951157 262993.6263604058 227912.81257196897 0.5154780625036929 0.7269760350311956 0.7317872449762057 0.9909468401388379 0.7881566748736629 0.9145235249186692 1.0208842508396727 0.8280136066063434 1.1539220783270323 1.0 17.798122505290376 5.229797707442451 0.48246519697634077 0.9788031278826445 1.1664234083853925e-19 0.6951638127563469 0.09729032259207183 4.184272231536233 0.5286713343207475 0.05668554789168589 2.567647242882118 169745.28018562126 -5.229797707442451 -0.9788031278826445 TLQTDSIDSFETQRT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 TLQTDSIDSFETQRTPR 17 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 TLQTDSIDSFETQRT(1)PR;TLQTDSIDSFET(0.022)QRT(0.978)PR;TLQTDSIDS(0.001)FET(0.006)QRT(0.993)PR;TLQTDSIDS(0.003)FET(0.096)QRT(0.901)PR;TLQTDSIDSFET(0.01)QRT(0.99)PR 161.47 4.7891e-09 3415980000.0 2498490.0 2146570.0 2059580.0 2270330.0 1967460.0 2693340.0 2890790.0 2120030.0 3343870.0 3233160.0 True False 2485038.407448337 2218017.2848210316 2349550.96180972 2557753.545217822 2218004.3689509504 2507155.7452403945 2750951.4438097966 2278237.4038942093 2519818.0440623835 3026816.960752465 0.821007163522223 0.7327887062816094 0.7762448117198415 0.8450307958436859 0.7327844391355451 0.8283142911347758 0.90885953114453 0.7526842334489366 0.8324976623085786 1.0 21.529370003723486 -4.999999999999999 0.2217903780770805 2.0243157012431716 0.7758261906123209 0.5822138954402545 0.0511877282090599 107.78666352422098 1.0786931592740276 49.32889877617008 0.09461074106523466 1.0000000000000021e-05 4.999999999999999 -1.2484895106308507 TLRDPSLPLLELQDIMTSVSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLRDPSLPLLELQDIMTSVSGR 22 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 236.5 1.5552e-30 202410000.0 173800.0 187450.0 205490.0 186590.0 182880.0 215620.0 190320.0 180540.0 215490.0 210610.0 False True 172864.28011099517 193689.15993408207 234421.205848901 210212.2748684964 206168.68398531602 200714.696914884 181113.49450699618 194012.81156354418 162385.37691806266 197168.6894877075 0.8767329161650304 0.9823525248219375 1.188937282374725 1.0661544457929872 1.0456461648195396 1.017984637603414 0.9185712750719871 0.9839940208946812 0.8235860234197406 1.0 17.589070943458644 2.3337793968882545 4.51610964800768 0.9355650009035342 1.0390989280952136 0.24000918688457173 0.085002831387267 0.3218733763466566 11.567036777996181 0.031589985737848804 0.025860817753406616 215.66486451581088 -2.3337793968882545 0.10353392719167942 TLRDS(ph)PNVEAAHLAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLRDSPNVEAAHLAR 15 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;E5RJ97;H0YC29 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 T(0.095)LRDS(0.905)PNVEAAHLAR;T(0.003)LRDS(0.997)PNVEAAHLAR;T(0.003)LRDS(0.997)PNVEAAHLAR 187.73 1.982e-07 1605420000.0 440483.0 486810.0 489520.0 463410.0 491130.0 533590.0 520040.0 455370.0 598900.0 535820.0 True False 438111.4884702625 503013.1765671412 558440.1610158844 522077.6584855022 553672.4943444238 496704.1792357528 494883.6784542789 489352.02172200667 451309.1198488459 501623.508861418 0.8733870736335411 1.002770340068147 1.1132655291284663 1.0407758991808636 1.1037610569750733 0.990193183655146 0.9865639662255122 0.9755364592714861 0.8996969078925838 1.0 18.936245436857114 2.1426449550394637 1.9027301162701613 0.9570353104294206 1.0305465549574668 0.15419541002646542 0.06645433643133057 0.6188372915865857 4.376244495867674 0.0367586208982827 0.021504590415917874 138.88167797784084 -2.1426449550394637 0.07351124452804625 TLS(ph)ADASVNTLPVVVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLSADASVNTLPVVVSR 17 0 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 1 T(0.001)LS(0.999)ADASVNTLPVVVSR;T(0.001)LS(0.999)ADASVNTLPVVVSR 185.33 6.1416e-10 551640000.0 432940.0 413870.0 386440.0 445530.0 401530.0 457940.0 425470.0 432700.0 596020.0 514420.0 True False 430609.0991441559 427645.4127603016 440847.39300330565 501934.0523187799 452662.46544523136 426283.68567480746 404888.39064676245 464990.27120607946 449138.8572588234 481589.27518288075 0.8941417953724875 0.887987824475339 0.9154011846212655 1.0422450793327434 0.9399346886895175 0.8851602551010479 0.8407338192757894 0.9655328620628068 0.9326180635734994 1.0 18.877443738600963 0.8113605477004819 1.538811847982376 0.999052634216465 0.9207082329056041 0.17575474783579936 0.0514445730187307 1.3025178397002588 5.604413955339367 0.05177609119028564 0.015047844581295832 6.476800912890218 -0.8113605477004819 -0.07834440131086085 TLS(ph)DDLDEAAKEFQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSDDLDEAAKEFQEK 16 1 Q9H0A0;Q9H0A0-2;A0A087WV29 Q9H0A0 NAT10 N-acetyltransferase 10 1 T(0.025)LS(0.975)DDLDEAAKEFQEK 105.77 0.00076148 9654400.0 25407.0 18578.0 16555.0 15664.0 14272.0 28755.0 26953.0 24986.0 48555.0 21658.0 True False 25270.211534983056 19196.357499361857 18885.80010136044 17647.060793933895 16089.454603228505 26767.234531989117 25649.180419541153 26850.582196337178 36589.27085366624 20275.767897653313 1.2463257452216048 0.9467635256163893 0.9314468481140117 0.8703522787897142 0.7935312085068144 1.3201588549988834 1.2650164742963816 1.3242695582170687 1.8045812636226235 1.0 14.307468933753162 2.664240470375391 6.776608517003585 1.3553887193933005 0.9512965531066752 0.4475056007207754 0.21377468795886884 0.22723098381678936 17.515625096164918 0.06799883026721872 0.06411476777509091 461.5730784469714 -2.664240470375391 -0.40409216628662536 TLS(ph)DESIYNSQR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLSDESIYNSQR 12 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 TLS(1)DESIYNSQR;TLS(0.996)DES(0.004)IYNSQR;TLS(1)DESIYNSQR;TLS(0.997)DES(0.003)IYNSQR 366.5 2.2086e-86 2952770000.0 1388540.0 1425720.0 1272000.0 1258450.0 1240210.0 1557740.0 1455700.0 1272050.0 1701170.0 1494140.0 True False 1381064.2549212968 1473174.2283340588 1451086.5435778014 1417769.6409682161 1398143.3921994118 1450057.1003255348 1385282.229685973 1366976.8303390173 1281939.4480101194 1398782.706002387 0.9873329495674649 1.0531830440943017 1.0373923965108882 1.0135738988510177 0.9995429498804698 1.0366564399910878 0.9903484106155435 0.977261746569438 0.9164678992020164 1.0 20.415740433670305 1.847747177003829 2.1423713811781706 0.9579634730507506 1.0219558982829686 0.47506502424142916 0.02661005975753405 0.24010107121209423 2.0718222296968363 0.01581179658381049 0.007366442036731995 70.42829537752826 -1.847747177003829 0.06399242523221804 TLS(ph)DESLCSGR ddPTM_BT-474_Trastuzumab_2h_R1 6 TLSDESLCSGR 11 0 O60292;M0R2Q7 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 T(0.007)LS(0.993)DES(0.001)LCSGR;TLS(1)DESLCSGR;T(0.002)LS(0.998)DESLCSGR;TLS(1)DESLCSGR;TLS(1)DESLCSGR;TLS(0.977)DES(0.022)LCSGR 309.49 1.4910999999999994e-45 10123340000.0 3486460.0 3373970.0 2932260.0 2996910.0 2805432.0 3445030.0 3390310.0 3029643.0 3952970.0 2993670.0 True False 3467689.2867421177 3486270.5518420655 3345096.720339184 3376318.498719898 3162687.136101773 3206883.1848283284 3226307.753058087 3255730.3448754316 2978813.5105842208 2802611.417590168 1.2373064867208095 1.2439364693803123 1.1935642234753592 1.2047044686712343 1.1284786453989462 1.1442482410157933 1.1511791227312689 1.1616774000281778 1.0628706826383947 1.0 21.418340297719595 2.4993477943617832 0.025525604076313824 7.95180162117182e-10 2.3120648391431304 0.8740183219019321 0.025591128813758544 105.53432551844895 1.2727527515845694 54.258580327894954 60.60546236017026 315.7532245421033 -2.4993477943617832 2.31206483834795 TLS(ph)FGSDLNYATR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSFGSDLNYATR 13 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 T(0.01)LS(0.988)FGS(0.002)DLNYATR 83.54 0.008705200000000001 0.0 39531.0 47895.0 32117.0 37433.0 31617.0 44348.0 44450.0 32739.0 46373.0 44709.0 True False 39318.169488306965 49489.15612186107 36638.7944340316 42172.01396190804 35643.237541359005 41282.32714396293 42299.78368451024 35182.150425273474 34944.99551636419 41855.63334269935 0.9393758103331871 1.1823774285449486 0.8753611284303336 1.0075588539448985 0.8515756349814274 0.9863027709067884 1.0106114830033592 0.8405595045525719 0.8348934832796995 1.0 15.353134187477577 4.217743691657995 24.999598461908466 0.9227780530741525 1.0608767530842433 0.27622649795322674 0.08730853468176421 245.18455251291923 294449.3147651407 0.02083358386449327 0.04507937614306531 16509.871446494977 -4.217743691657995 0.13809870001009084 TLS(ph)GSSDRDFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLSGSSDRDFEK 12 1 A0A1B0GW72 A0A1B0GW72 1 T(0.017)LS(0.942)GS(0.018)S(0.023)DRDFEK;T(0.044)LS(0.899)GS(0.044)S(0.014)DRDFEK 110.57 0.00089346 157470000.0 168667.0 180699.0 159208.0 154924.0 189358.0 232880.0 224920.0 180300.0 279340.0 195893.0 True False 167758.9156126653 186713.45698014804 181623.10253925674 174537.36251528442 213471.61888720162 216781.55374055394 214039.76032216064 193754.90154484878 210500.39996422868 183390.94102756496 0.9147611908891942 1.0181171214563083 0.9903602736405475 0.9517229233752076 1.1640248841687078 1.1820734030039692 1.1671228639913513 1.0565129360218837 1.147823326412775 1.0 17.484562850243304 3.242745184977069 24.99987365504156 1.1239414722608716 0.9738115446871372 0.6185946446426773 0.05791440957174782 70.4010828646778 420594.08768254606 0.016128582799748638 0.021076015347313466 1748.8202964879704 -3.242745184977069 -0.15012992757373445 TLS(ph)INEEEPEGGFSK ddPTM_BT-474_Trastuzumab_2h_R1 6 TLSINEEEPEGGFSK 15 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YDJ2 E9PP16 PPFIBP2 Liprin-beta-2 1 T(0.004)LS(0.996)INEEEPEGGFSK;TLS(1)INEEEPEGGFSK;TLS(1)INEEEPEGGFSK;TLS(1)INEEEPEGGFSK;TLS(1)INEEEPEGGFSK;T(0.007)LS(0.993)INEEEPEGGFSK 308.25 4.5778999999999995e-56 4888630000.0 7879280.0 6228870.0 5427160.0 6116100.0 6100060.0 7343400.0 6009480.0 5924900.0 9267820.0 7270380.0 True False 7836858.8319503125 6436194.172518572 6191256.95427964 6890397.63290214 6876866.483111701 6835768.042504216 5718778.493957039 6367046.124032586 6983889.943425502 6806378.123914521 1.1513992742212118 0.9456121971691095 0.9096257718222229 1.0123442317570357 1.0103562214607966 1.0043179967457923 0.8402087556469789 0.9354528955218749 1.0260802171550365 1.0 22.69845587083913 TLS(ph)MDK ddPTM_BT-474_Trastuzumab_2h_R1 6 TLSMDK 6 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 1 TLS(1)MDK;TLS(1)MDK;TLS(1)MDK;TLS(1)MDK;TLS(1)MDK;TLS(1)MDK 133.86 0.014981 2139500000.0 5484780.0 3701150.0 3329420.0 3112680.0 2704980.0 3870820.0 4031880.0 3653040.0 5070180.0 4170920.0 True False 5455250.55389634 3824340.540357582 3798173.3961625826 3506744.968849732 3049443.1693274286 3603239.3243301753 3836842.5611226843 3925648.3945612577 3820702.075931242 3904728.3146957285 1.3970883795845945 0.9794127099609974 0.9727113105072845 0.898076559040444 0.780961676091683 0.9227887407093401 0.9826144745288549 1.0053576275170784 0.9784809000799755 1.0 21.896790740565486 4.750780227679776 3.572582687861654 0.9415009464779396 1.4563280879946212 0.8226498057917804 0.06292876827136064 0.13341993876845143 2.989865025010455 0.01717795842241167 0.1871400321208939 56335.25022643181 -4.750780227679776 0.5148271415166816 TLS(ph)MDKGF ddPTM_BT-474_Trastuzumab_2h_R1 8 TLSMDKGF 8 1 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 1 TLS(1)MDKGF;TLS(1)MDKGF;TLS(1)MDKGF;T(0.005)LS(0.995)MDKGF;TLS(1)MDKGF;TLS(1)MDKGF;TLS(1)MDKGF;TLS(1)MDKGF 146.11 0.0014696 4941595000.0 11857540.0 9340850.0 8408070.0 8869250.0 7212270.0 9815810.0 10631940.0 9239080.0 13685470.0 11191110.0 True False 11793700.322136546 9651754.54558693 9591853.171745436 9992096.140615305 8130709.834026542 9137266.158631334 10117632.444245046 9928547.064697616 10312869.294402702 10476883.778608687 1.1256878067328078 0.9212428761778885 0.9155253961420977 0.9537278786099351 0.7760618525355338 0.8721358709053798 0.9657100964413534 0.9476622318717857 0.9843451079851755 1.0 23.32070633283448 -0.16407669434878214 10.34047610642904 0.9999999999464262 0.9345197735335391 0.04001401773633606 0.08371380951515167 0.0 0.0 0.08055210820290332 0.01898631398304849 0.6853671831663398 0.16407669434878214 -0.06548022641288709 TLS(ph)NAEDYLDDEDS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 2 TLSNAEDYLDDEDSD 15 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 2 T(0.011)LS(0.989)NAEDYLDDEDS(1)D;T(0.064)LS(0.936)NAEDYLDDEDS(1)D 282.49 1.1614e-33 287300000.0 525540.0 553430.0 441610.0 504380.0 480010.0 593600.0 543680.0 458650.0 645170.0 531620.0 True False 522710.551032983 571850.5829945008 503784.8494570697 568234.4562847532 541136.4282578274 552565.8291840986 517380.1213407089 492876.79197750916 486176.49833508115 497691.55645722 1.0502700804366842 1.1490059969374933 1.0122431110610441 1.1417401981453885 1.0872927644380115 1.110257592307768 1.039559772770992 0.9903258063809955 0.9768630631306909 1.0 18.924892385742226 1.962591400577743 2.771470340343872 0.9880444327488769 1.0927895727836783 0.5910783203178293 0.0382900728247923 0.1746815818807345 2.491079907053988 0.01829046654582568 0.010093843617996659 91.74690034044397 -1.962591400577743 0.1047451400348014 TLS(ph)PEFNER ddPTM_BT-474_Trastuzumab_2h_R1 4 TLSPEFNER 9 0 Q9BSJ8-2;Q9BSJ8 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 1 T(0.002)LS(0.998)PEFNER;T(0.008)LS(0.992)PEFNER;TLS(1)PEFNER;TLS(1)PEFNER 122.18 0.00067797 832230000.0 876900.0 1106300.0 989280.0 906260.0 1082890.0 1199400.0 927900.0 863090.0 1177210.0 1107640.0 True False 872178.8678327495 1143122.5267275276 1128562.0250240918 1020992.4230790692 1220789.6227081078 1116488.301083906 883013.9320777748 927498.1584822166 887102.3693058279 1036949.466901687 0.8411006473041956 1.102389810897031 1.0883481413960654 0.9846115511585188 1.1772894067400592 1.0767046386743166 0.8515496273083992 0.8944487538563464 0.8554923818577304 1.0 19.983914159110125 2.241801415223776 24.998419044036737 0.8904549176989179 1.052907809223065 0.37068614586916826 0.09166259165313098 78.8687136537317 608371.4902075393 0.031576719634318025 0.025395232478414364 174.5024043656413 -2.241801415223776 0.1624528915241471 TLS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 8 TLSPGK 6 0 Q9H307;C9JLG1;Q8NFU7;P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2;F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 Q9H307;P04626-5;F5H212 PNN;HIVEP1;TET1;ERBB2 Pinin;Methylcytosine dioxygenase TET1;Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase;Zinc finger protein 40 1 T(0.002)LS(0.998)PGK;TLS(1)PGK;T(0.001)LS(0.999)PGK;T(0.003)LS(0.997)PGK;T(0.001)LS(0.999)PGK;T(0.001)LS(0.999)PGK;T(0.013)LS(0.987)PGK;T(0.018)LS(0.982)PGK 125.31 0.018857 12841350000.0 10761450.0 10441900.0 10250580.0 8688160.0 8780100.0 7874640.0 9723070.0 8092690.0 10332670.0 8190790.0 True False 10703511.548909482 10789452.329238152 11693772.564361429 9788080.165182875 9898193.69127009 7330284.671708671 9252727.958365604 8696607.621647164 7786321.92918446 7668046.769711875 1.3958589286632197 1.4070665781350682 1.5250001617818534 1.276476325606796 1.2908363744424596 0.9559520034049173 1.206660344706436 1.1341359648454434 1.0154244181112406 1.0 22.870427705785847 3.1698424759542743 1.7964234715031147 1.0887909484878449 1.4326255136739028 0.7659497371036932 0.08850405605283926 0.16486239287659296 1.0972681872889227 0.02850857672081717 0.03813984685079379 1478.571994322419 -3.1698424759542743 0.3438345651860579 TLS(ph)PGKNGVVK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLSPGKNGVVK 11 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 TLS(1)PGKNGVVK;T(0.014)LS(0.986)PGKNGVVK;TLS(1)PGKNGVVK;T(0.002)LS(0.998)PGKNGVVK 159.65 1.7205e-05 5352690000.0 6325600.0 7817900.0 7881100.0 7582500.0 7350900.0 9111400.0 8525400.0 6053200.0 10781700.0 7546800.0 True False 6291543.672440224 8078114.075479647 8990690.37625078 8542443.722548757 8286993.542802168 8481550.363928549 8112993.831809306 6504920.521526778 8124694.502378198 7065156.762859455 0.8905030537346309 1.1433736499585072 1.272539404010621 1.2090947178207274 1.1729383821128696 1.2004758915633518 1.1483105193727878 0.9207043438472928 1.149966628495575 1.0 22.752290140993207 1.8569130095275812 9.029714629960683 1.0176388682911741 1.1586397126110617 0.21407109382170564 0.10809452798696989 0.44970574300680455 31.80073447202973 0.04587430255360056 0.0289190667350174 71.93048846718644 -1.8569130095275812 0.14100084431988757 TLS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSPGR 6 0 Q13523 Q13523;REV__F5H6U2 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 TLS(1)PGR 113.5 0.02736 1408600000.0 1631300.0 1757500.0 1783800.0 1783200.0 1774200.0 1600000.0 1749500.0 1770800.0 2106100.0 1641400.0 True False 1622517.2620544683 1815997.3250688151 2034943.534932455 2008952.9371643844 2000133.8534927128 1489395.765994874 1664870.001260981 1902946.0879402037 1587079.8752941298 1536644.446726761 1.0558833343071825 1.1817940896718884 1.3242774145099938 1.3073635488311546 1.3016243658402828 0.9692520408136492 1.0834451683389452 1.2383776168870486 1.0328217947065128 1.0 20.551351957980703 2.7547211097591022 24.991702102936376 1.0940445289645548 1.240347961997583 0.3977748991251264 0.10092371392257002 1030.53847034031 1593694.4463896055 0.03321721258723099 0.03513545646053686 568.487748670904 -2.7547211097591022 0.14630343303302817 TLS(ph)PGRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLSPGRR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 T(0.001)LS(0.999)PGRR;T(0.001)LS(0.999)PGRR;TLS(1)PGRR 82.645 0.014656 3823800000.0 2657210.0 3126460.0 3053840.0 3096060.0 2908060.0 2984690.0 3137610.0 2848030.0 3529020.0 3205120.0 True False 2642903.8766037878 3230522.331115019 3483794.1275468757 3488020.878553813 3278384.2035779636 2778365.405504525 2985831.8174658283 3060564.460603309 2659340.307445272 3000566.4975587116 0.8808016348759737 1.0766374728716732 1.1610454660416034 1.1624541170447975 1.0925884183021064 0.9259469529387296 0.9950893672561926 1.0199955452056844 0.886279410774244 1.0 21.516803472066503 2.752113898775724 23.89518340693981 0.9735864864124787 1.084484367034085 0.30303485827562004 0.08170721662328499 571.9508630562513 1008379.2548013295 0.025943055599159347 0.027357659594643313 565.0851555304703 -2.752113898775724 0.11089788062160622 TLS(ph)PTPSAEGYQDVR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLSPTPSAEGYQDVR 15 0 O14639-3;F8W8M4;O14639-5;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;A0A494C1P1;A0A494C1G0;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 T(0.004)LS(0.639)PT(0.353)PS(0.004)AEGYQDVR;TLS(0.996)PT(0.004)PSAEGYQDVR;T(0.001)LS(0.996)PT(0.003)PSAEGYQDVR 215.15 2.4953e-12 280310000.0 168368.0 141413.0 149104.0 133636.0 164053.0 161353.0 145538.0 136360.0 158583.0 165151.0 True False 167461.52539544323 146119.84621903644 170096.54716479903 150554.30389799224 184944.17713168755 150199.0468941068 138497.7709308494 146535.8756220499 119502.34455333033 154610.92178711545 1.0831157557292221 0.9450810106431522 1.1001586770112257 0.9737624105578467 1.196190896438339 0.9714646621208082 0.8957825833387609 0.9477718257434354 0.7729230456168789 1.0 17.23828270994512 2.484833997095642 15.120436802131476 0.9083689759509976 1.0540797945290126 0.4350448721187634 0.08363395328213553 1.980530502540007 3884.101264312693 0.026608895513621205 0.023407940140567733 305.37536361002464 -2.484833997095642 0.14571081857801493 TLS(ph)SSAQEDIIR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLSSSAQEDIIR 12 0 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 T(0.008)LS(0.957)S(0.034)S(0.001)AQEDIIR;TLS(0.876)S(0.089)S(0.035)AQEDIIR;TLS(0.836)S(0.082)S(0.082)AQEDIIR;TLS(0.475)S(0.475)S(0.05)AQEDIIR 225.65 1.8033e-11 1043590000.0 918298.0 804699.0 782040.0 831020.0 700132.0 652402.0 750478.0 668950.0 867367.0 742281.0 True False 913353.9856005001 831482.9197641823 892144.4343864653 936227.0467936003 789289.660192516 607302.9853291173 714174.5120356325 718870.445859271 653616.0249723383 694907.9910812641 1.3143523996311195 1.1965367076444324 1.283831019122841 1.3472676365929368 1.135818943403422 0.8739329423801343 1.0277252833492245 1.0344829172862464 0.9405792325906682 1.0 19.406462445656945 2.9993173184126323 5.004313090389922 0.9870337599379788 1.2769481902260353 0.868565152539259 0.05676191118446332 0.06367786386265312 4.66682334600574 0.01727189601606812 0.01975185212111879 998.429302392361 -2.9993173184126323 0.2899144302880565 TLSAS(ph)TQDLSPH ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSASTQDLSPH 12 0 Q6P597;Q6P597-3;Q6P597-2 Q6P597 KLC3 Kinesin light chain 3 1 T(0.004)LS(0.037)AS(0.835)T(0.124)QDLSPH 101.89 0.0025358 219450000.0 225820.0 142980.0 128670.0 156090.0 125390.0 194790.0 154090.0 136890.0 266600.0 223850.0 True False 224604.21021096074 147739.00286676487 146785.61758031088 175850.97799573187 141357.6732552425 181324.62578633847 146636.07801903668 147105.42691333534 200900.00225697472 209563.7013523731 1.0717705822216683 0.704983744385902 0.7004343625974455 0.839128994481947 0.6745331960784332 0.8652482496548783 0.6997207869146856 0.7019604347700624 0.9586583981887651 1.0 17.677029322924792 1.1476468343185324 6.039695295303153 0.9932109292802308 0.7709580765373907 0.3164893059064777 0.11529685810763347 0.22512809592427654 11.596666607732017 0.10354651576086578 0.02616014061715315 14.049045994452182 -1.1476468343185324 -0.22225285274284012 TLSDDLDEAAKEFQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLSDDLDEAAKEFQEK 16 1 Q9H0A0;Q9H0A0-2;A0A087WV29 Q9H0A0 NAT10 N-acetyltransferase 10 0 ; 151.62 5.705699999999999e-07 69572000.0 116900.0 106361.0 103480.0 94597.0 102851.0 147821.0 140769.0 119246.0 240300.0 138194.0 False True 116270.62338881112 109901.16158841766 118049.08453571591 106572.97050075095 115948.46520436199 137602.4822032052 133959.46568019842 128144.74203891869 181081.2848550302 129374.34060616413 0.8987147130106519 0.8494819071037749 0.9124613426635806 0.8237566274843932 0.896224588748455 1.0635994862543017 1.0354407609155831 0.9904958080444365 1.399669238943371 1.0 16.981191983953963 2.3634742875317025 0.9678990126174407 1.1368463553857118 0.8658556842954782 0.5063603321827206 0.1101621412225588 0.4728376850009569 0.8684992708767844 0.07479778892554681 0.04745141968123802 230.92677343380714 -2.3634742875317025 -0.27099067109023356 TLSDPPS(ph)PLPHGPPNK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 1 T(0.001)LSDPPS(0.999)PLPHGPPNK 86.8 0.0043068 404820000.0 740210.0 736450.0 692150.0 691870.0 667530.0 812480.0 772370.0 650920.0 871040.0 738110.0 True False 736224.7916050614 760962.2930565733 789598.7037243503 779460.6710609702 752535.9887397084 756315.1699721975 735007.5123600722 699494.9557047858 656383.8633380168 691003.1878722367 1.0654434082599138 1.101242811049479 1.1426846034614002 1.1280131332839651 1.0890485050538563 1.0945176277711133 1.0636817966402374 1.012289042918452 0.9498999061917195 1.0 19.398332840791095 1.7965972141063464 1.596537370565203 0.9740173984829109 1.1070288456828905 0.8352698454026288 0.023322892832097195 0.13932088936849457 0.68155024706321 0.017746151735535596 0.007320678080356575 62.603298181018666 -1.7965972141063464 0.1330114471999796 TLSDVEDQKELASPVS(ph)PELR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 TLSDVEDQKELASPVS(1)PELR;TLSDVEDQKELAS(0.022)PVS(0.978)PELR 184.76 2.3551e-17 307140000.0 386570.0 353050.0 326040.0 336680.0 346260.0 406060.0 374140.0 368730.0 557220.0 416090.0 True False 384488.7500719645 364801.0558267684 371943.5980095169 379303.65347942157 390354.1585561868 377990.0279624243 356041.4188464042 396246.50497300125 419900.59736545937 389534.7799674288 0.9870460093553489 0.9365044524580615 0.9548405357812136 0.9737350115723614 1.0021034799224513 0.9703627183021505 0.9140170201905329 1.0172301046035828 1.0779540594566923 1.0 18.571392620814695 1.5494250595780104 6.167094777616867 1.041552894751618 0.9635353854342957 0.5466506199844039 0.029206412723081894 0.0921007436625081 7.069556716457462 0.015851844241434567 0.007275260701641199 35.43439805778144 -1.5494250595780104 -0.07801750931732221 TLSFSHDGK ddPTM_BT-474_Trastuzumab_2h_R1 3 TLSFSHDGK 9 0 Q96J01;D6REC9;Q96J01-2;H7C0C5 Q96J01 THOC3 THO complex subunit 3 0 ;; 172.59 5.6072e-05 1062240000.0 1502390.0 1812750.0 1759960.0 1654970.0 1610930.0 2034450.0 2116840.0 1893490.0 2473390.0 2048450.0 False True 1494301.2991712203 1873086.2879194834 2007747.0701534473 1864489.0323121035 1816072.3867698202 1893813.2600801713 2014440.3620859093 2034791.838747398 1863856.176227981 1917716.1672337207 0.7792087925747267 0.9767275887449939 1.046946938477134 0.9722445188547393 0.9469974847161453 0.987535743004123 1.0504371796540215 1.0610495304331493 0.9719145137711218 1.0 20.870957778509293 4.7274785597072 3.6847466484012177 1.0084717134811065 0.7568695871338721 0.7757517181327304 0.03606649996734134 0.1247962795311674 3.186369905933646 0.00979618002119821 0.08467062958414755 53392.2914164459 -4.7274785597072 -0.25160212634723444 TLSGFSSTSVLPHTGYIYHSDIVQSLPPDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSGFSSTSVLPHTGYIYHSDIVQSLPPDLR 31 0 Q8WWY3-4;Q8WWY3;E7EVX8;Q8WWY3-3;Q8WWY3-2 Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 0 186.59 1.247e-18 215670000.0 35681.0 62053.0 63714.0 66698.0 67691.0 62338.0 63801.0 46542.0 63652.0 59839.0 False True 35488.89746053176 64118.39659316936 72684.37738798428 75141.95996129993 76311.04761400922 58028.72078786774 60714.70188651157 50015.20037548726 47965.81749310193 56020.02378925465 0.6335037913236121 1.1445621093339857 1.2974713766888128 1.3413410933915582 1.3622101965020343 1.035856768040116 1.0838035720034345 0.8928093383830517 0.856226296396225 1.0 15.773654975611501 2.0159935761992744 1.9497241948485504 0.9059409250650827 1.167617600130196 0.18755830248630878 0.1995080347589608 0.5238902959067235 3.729597754272155 0.12062956172713082 0.06302810543998108 103.75130694878679 -2.0159935761992744 0.2616766750651134 TLSGS(ph)PRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSGSPRPK 9 1 Q8TDN4-2;Q8TDN4;V9GYB4 Q8TDN4-2 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 T(0.352)LS(0.105)GS(0.543)PRPK 67.385 0.067074 0.0 188620.0 184920.0 164290.0 158630.0 163740.0 205510.0 203150.0 168050.0 261310.0 190860.0 True False 187604.49087765193 191074.95041349967 187420.60396572095 178712.54173529978 184591.31843698397 191303.57741850402 193322.85839163698 180590.74434060915 196913.65187460682 178679.151396533 1.0499517677992067 1.0693746244040376 1.0489226219224004 1.0001868731662635 1.033088175057035 1.0706541637527385 1.0819553198045249 1.01069846666013 1.1020516402476468 1.0 17.447011782394554 2.788241932375567 24.97867817536359 1.052542180754558 1.040169796612067 0.036134227189286605 0.03290888290418419 1656.9392884678693 833069.9782588223 0.010023491970644153 0.01063124330225418 614.1040087433787 -2.788241932375567 -0.012372384142490978 TLSKEEETKK ddPTM_BT-474_Trastuzumab_2h_R1 3 TLSKEEETKK 10 2 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 ;; 115.14 0.0007103 4955830000.0 4150500.0 3020600.0 2765690.0 2885440.0 2608660.0 3961230.0 4433110.0 3848120.0 7891500.0 3975260.0 False True 4128154.1691638962 3121138.845008743 3155075.11219158 3250736.4081491716 2940857.388260795 3687399.4938324234 4218663.533175236 4135286.254757422 5946745.565682364 3721555.503408686 1.1092550320377579 0.8386651340145262 0.8477839734760776 0.8734886273150363 0.7902226328660621 0.9908221146923705 1.1335753367943144 1.1111714580018457 1.5979193539463696 1.0 21.827474321840324 2.048392875907168 1.5457877146836332 1.266633162603503 0.8868160113923707 0.465036043862297 0.16360779099383332 0.3269373290777047 1.46798019708222 0.10008671317845119 0.050339232394235836 111.78740531454612 -2.048392875907168 -0.37981715121113235 TLSLEPEESLDVS(ph)ETEGEQILK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLSLEPEESLDVSETEGEQILK 22 0 A0A0C4DGW2;P57768-2;P57768 A0A0C4DGW2 SNX16 Sorting nexin-16 1 TLSLEPEESLDVS(0.818)ET(0.182)EGEQILK 126.59 1.2535e-05 15830000.0 11954.0 11655.0 10219.0 13040.0 11405.0 13949.0 12361.0 12276.0 15252.0 13779.0 True False 11889.64099221425 12042.92962940372 11657.746374859697 14690.862662978687 12857.359147268855 12984.738462414061 11763.0512063944 13192.09745626492 11493.34896632926 12899.612423204597 0.9217052886663828 0.9335884857858345 0.9037284216298657 1.1388607797666759 0.9967244538401996 1.0065991160367218 0.9118918321324382 1.0226739396087734 0.890984053571589 1.0 13.655040099188623 TLSS(ph)PSNRPSGETSVPPPPAVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 Q8WWM7 ATXN2L Ataxin-2-like protein 1 TLS(0.04)S(0.895)PS(0.065)NRPSGETSVPPPPAVGR;TLS(0.139)S(0.858)PS(0.002)NRPSGETSVPPPPAVGR 214.78 1.6998e-32 829030000.0 280930.0 275540.0 278470.0 271720.0 252320.0 288130.0 262990.0 257830.0 323850.0 319770.0 True False 279417.50409425737 284711.1823325524 317676.1554953697 306119.72413992055 284451.45638219034 268212.25128506403 250268.1689806376 277070.5838342117 244041.50686767217 299362.00483112974 0.9333766462844105 0.9510598463995392 1.0611772715597991 1.022573737480823 0.9501922481533672 0.8959462021119303 0.8360051206959748 0.9255369063636093 0.8152053464678529 1.0 18.19153159990742 2.8938149673999027 3.1716788371190323 0.8879675677335014 0.9936297288477878 0.3874139534850739 0.05746323554433178 0.247429096272921 4.732311587104441 0.01798813609794928 0.019567123557116522 783.0959310708765 -2.8938149673999027 0.10566216111428639 TLSVAAAFNEDEDS(ph)EPEEMPPEAK ddPTM_BT-474_Trastuzumab_2h_R1 7 TLSVAAAFNEDEDSEPEEMPPEAK 24 0 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;T(0.002)LS(0.002)VAAAFNEDEDS(0.996)EPEEMPPEAK 175.39 5.7201e-12 1467070000.0 1356120.0 1126874.0 1029690.0 1035964.0 1074897.0 1343427.0 1320570.0 1243435.0 1722850.0 1423743.0 True False 1348818.8005990966 1164381.319880282 1174661.4017740765 1167116.9361802186 1211778.7615363314 1250559.0535769959 1256688.9840327047 1336226.433734994 1298276.702507235 1332878.5028122915 1.0119593029320917 0.873583989406018 0.8812966818022898 0.8756364017558043 0.909144201050248 0.9382393451003923 0.9428383617720358 1.0025118050262185 0.9740397941507432 1.0 20.34611384834158 2.1204955929127745 1.5036493917603564 0.9937610255281635 0.9054967548518039 0.44163745651987796 0.0386828259194575 0.34985274159902763 1.5091801134706968 0.023688310564002845 0.012624891303386053 131.97619190999148 -2.1204955929127745 -0.08826427067635956 TLT(ph)AEEAEEEWER ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTAEEAEEEWER 13 0 P35269;M0R0R9 P35269 GTF2F1 General transcription factor IIF subunit 1 1 TLT(1)AEEAEEEWER;T(0.003)LT(0.997)AEEAEEEWER 334.26 1.7062999999999994e-61 368700000.0 178378.0 154241.0 137927.0 161276.0 131180.0 192529.0 162585.0 193468.0 252660.0 163625.0 True False 177417.63266765885 159374.81844434637 157345.92271702454 181693.52506399938 147884.99543522374 179219.9233945168 154720.14241498517 207905.56457059784 190395.32847054483 153182.31241358948 1.1582122627097733 1.040425724962535 1.0271807510791024 1.1861260102499964 0.9654182203225717 1.1699779208883219 1.0100392139090026 1.3572426300058493 1.2429328521721286 1.0 17.22489019685385 1.7511924186599142 24.999999999998735 1.234141372960924 1.0792792228615964 0.18617103858797568 0.10858576185831542 4.273402332632174 8470.983626814343 0.04603016333240234 0.025526165696177362 56.388743664611724 -1.7511924186599142 -0.1548621500993277 TLT(ph)AEEAEEEWERR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLTAEEAEEEWERR 14 1 P35269;M0R0R9 P35269 GTF2F1 General transcription factor IIF subunit 1 1 T(0.42)LT(0.58)AEEAEEEWERR 130.77 3.5236e-05 257510000.0 41807.0 55175.0 50374.0 56585.0 52861.0 58877.0 55614.0 68331.0 85178.0 66684.0 True False 41581.915757194365 57011.46652100819 57466.221341342876 63748.655198209206 59592.53501830594 54806.971571550115 52923.73835388868 73430.20619778732 64187.023226723904 62428.170028955356 0.6660761598154791 0.9132330243632835 0.920517473356803 1.021152072351975 0.954577636837117 0.8779205212347184 0.8477541201246434 1.1762351221208154 1.0281740310015937 1.0 15.929909555918169 5.30845786801243 1.0555835584475404 0.9919491128171402 1.0795581486947248e-15 0.5438790683770733 0.08608486337132211 4.341811411305676 1.6952858266916067 0.028062723073682384 6.457117444690321 203450.08142936064 -5.30845786801243 -0.991949112817139 TLT(ph)PPLRR ddPTM_BT-474_Trastuzumab_2h_R1 4 TLTPPLRR 8 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 T(0.301)LT(0.699)PPLRR;T(0.315)LT(0.685)PPLRR;T(0.386)LT(0.614)PPLRR;T(0.223)LT(0.777)PPLRR 99.973 0.0037701 5149500000.0 1364900.0 1478770.0 1292080.0 1315070.0 1330640.0 1483690.0 1468600.0 1340290.0 1871850.0 1458670.0 True False 1357551.530054647 1527989.9655146573 1473993.6330393115 1481557.7271628354 1500089.1166788097 1381126.0025305827 1397558.2074031876 1440309.2456547155 1410557.6490049446 1365576.431769783 0.9941234327655057 1.118934048630575 1.079392993864884 1.0849321156214897 1.0985024944628685 1.0113868183420884 1.023419982133081 1.0547262036355438 1.03293936259347 1.0 20.381078633811345 2.7374547584006845 24.99902521987183 1.0299645875705334 1.0783841343771472 0.359137411901724 0.033317613263829864 112.55539074224434 2544384.645242971 0.010107539157928199 0.010061782233364179 546.3296343213457 -2.7374547584006845 0.048419546806613756 TLTAVHDAILEDLVFPSEIVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTAVHDAILEDLVFPSEIVGK 22 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 ; 194.92 1.925e-18 5363900000.0 3051100.0 3176700.0 2916000.0 2708800.0 3048200.0 3587700.0 3524000.0 3266700.0 4414900.0 3716300.0 False True 3034673.2166090817 3282434.539144298 3326547.4536736384 3051733.8022604804 3436370.2019031066 3339690.7435373766 3353530.6570126885 3510477.741966487 3326907.0516291 3479122.552315499 0.8722524633659087 0.9434662015454738 0.9561455233761985 0.877156166927614 0.9877117434728078 0.9599232833332286 0.9639012729749276 1.00901238435252 0.9562488821829247 1.0 21.730292068202584 7.999999999999999 0.19863695821696326 1.0066845274320873 0.45661763057022686 0.5081084324100991 0.030651560769708798 41.62281317838526 0.5003602714649934 0.05548285393683458 7.119747194655227 99999999.99999979 -7.999999999999999 -0.5500668968618604 TLTDEVNS(ph)PDSDRR ddPTM_BT-474_Trastuzumab_2h_R1 7 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(0.5)PDS(0.5)DRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR 238.3 1.5542e-17 12034670000.0 4306530.0 5017890.0 4819890.0 4996460.0 4855630.0 4821640.0 5098480.0 4600460.0 5663840.0 5207770.0 True False 4283344.120980459 5184907.435271441 5498488.61676509 5629011.323701418 5473965.698926181 4488331.375719706 4851847.044314997 4943769.685862536 4268062.523567686 4875405.660003792 0.8785615843456046 1.0634822611391497 1.1278012539290554 1.1545729147996764 1.122771330359805 0.9206067533088549 0.9951678655415156 1.0140222230981886 0.8754271585196393 1.0 22.217090833176652 2.739456235870341 24.999466630693348 0.9690821861430815 1.077079137377929 0.30660254770092377 0.0806455253347416 108.70772920232255 3034415.8083205572 0.026270503614598144 0.026402856822353927 548.8532445315913 -2.739456235870341 0.10799695123484743 TLTDEVNSPDSDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 ; 211.51 5.9922e-09 3571400000.0 1414070.0 1762250.0 1690710.0 1815640.0 1557740.0 1791960.0 1746350.0 1647740.0 2013340.0 1826780.0 False True 1406456.8042379473 1820905.42594738 1928747.2720852385 2045499.8378382393 1756108.9555516527 1668086.0230201068 1661872.378795151 1770702.7258541835 1517179.334373811 1710193.3364149584 0.8223963772343263 1.0647365927436632 1.1277948703322807 1.1960635059695512 1.026848203743412 0.9753786238676849 0.9717453245835341 1.0353816075357127 0.887139074903801 1.0 20.70572799953494 2.9977653989819504 24.998595094952282 0.9828616278531063 1.065526067101126 0.12365412082192018 0.09613768403835406 186.55115026674108 2086997.551008298 0.028761981391949406 0.03384739207748738 994.8678556921517 -2.9977653989819504 0.0826644392480197 TLTELILDAQEHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLTELILDAQEHVK 14 0 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 176.23 2.2576e-06 164570000.0 275420.0 287600.0 285040.0 281890.0 261370.0 320160.0 323280.0 299820.0 391090.0 315230.0 False True 273937.16932203836 297172.5921421287 325171.15438790596 317577.24509716686 294653.92023863754 298028.0927755744 307641.7113504719 322194.09085511154 294711.1098375109 295111.7515180193 0.9282489359130518 1.0069832550330804 1.1018576953146213 1.0761253778054847 0.9984486172542207 1.009882159021299 1.0424583560905318 1.0917697760180134 0.9986424068901102 1.0 18.170901845288768 4.634211187281201 3.575658965484079 1.044904613598902 0.925595236305721 0.4371916568433051 0.03767539013359463 0.2174622551400744 4.49347264949266 0.00941325841862473 0.05641433010421373 43073.601645538256 -4.634211187281201 -0.11930937729318092 TLTEPSVDFNHS(ph)DDFTPISTVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 TLTEPSVDFNHS(0.999)DDFTPISTVQK 270.18 8.484699999999999e-46 183310000.0 147320.0 84040.0 87119.0 92090.0 91339.0 103160.0 86567.0 112310.0 145140.0 97349.0 True False 146526.84548879086 86837.22059674717 99384.59794807725 103748.58455779952 102970.48024133175 96028.79201251942 82379.42349194604 120691.14249862442 109372.19177635916 91136.10347532801 1.6077804503509194 0.9528300781507011 1.0905074296377202 1.138391708680917 1.129853881334827 1.053685513760372 0.9039164540784592 1.3242956182705072 1.2000973006923426 1.0 16.475735068993718 4.74916248497581 24.847248795054647 1.1017584187892517 1.6077807607784875 0.6405264956497663 0.11637790959208719 952.9265194764432 2233295.43334022 0.028720267545168012 0.4141122167963728 56125.79232599501 -4.74916248497581 0.5060223419892358 TLTGDVKTS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTGDVKTSPPR 12 1 Q9H8T0;Q9H8T0-2;H3BSX7;H3BNB8;H3BVH0;H3BRV2;H3BM79 Q9H8T0 AKTIP AKT-interacting protein 1 TLTGDVKT(0.166)S(0.834)PPR;TLTGDVKT(0.111)S(0.889)PPR 85.837 0.0069337 1035770000.0 1301170.0 1364790.0 1248270.0 1397990.0 1331410.0 1650260.0 1736840.0 1470740.0 2584800.0 1782790.0 True False 1294164.645293577 1410216.2101170225 1424015.5658426564 1574975.3906608555 1500957.1716146609 1536181.4104941883 1652822.413826879 1580494.0870663952 1947810.6745454923 1669010.8158766893 0.7754081836874047 0.8449413249465801 0.853209309548217 0.943657989318398 0.899309433669695 0.9204142932334869 0.9903006008733941 0.9469645565096003 1.1670449682031308 1.0 20.670561873312344 3.5920863596812347 0.3558200921879243 1.0522359196815974 0.7202518632399337 0.6747965123451717 0.057902341025248015 1.7295004281125892 0.31413503158153194 0.05877448472989901 0.23112254873530672 3909.1862243341047 -3.5920863596812347 -0.3319840564416636 TLTHYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTHYK 6 0 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ; 110.54 0.053492 656280000.0 2240600.0 2611600.0 2415900.0 2206600.0 2083070.0 2299300.0 2379200.0 2433700.0 3692200.0 2660800.0 False True 2228536.8585540648 2698525.527254464 2756037.720620761 2485955.333752203 2348336.617176797 2140354.8029700066 2264109.0065733823 2615315.0520781945 2782306.7829452455 2490985.4659745116 0.8946406508567191 1.0833164480944732 1.1064045769301818 0.99798066576822 0.9427339698499974 0.8592401811275391 0.9089210023502198 1.0499118071148774 1.116950227510366 1.0 21.248285173308517 1.5851681140849072 7.450931614468635 1.0660119139885698 0.9756571715744179 0.1947524476785205 0.07862275632688984 0.21121746932087365 24.685757677288034 0.046433019575818385 0.02200259793192049 38.474068518307675 -1.5851681140849072 -0.09035474241415187 TLTPDQWAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TLTPDQWAR 9 0 Q9H3K6;A0A087WZT3 Q9H3K6 BOLA2 BolA-like protein 2 0 ;; 141.23 0.001316 197930000.0 658330.0 784610.0 711630.0 772560.0 740080.0 726960.0 730300.0 674900.0 851210.0 769110.0 False True 654785.624427339 810725.2695432389 811821.3184011552 870366.0167876382 834324.8012021686 676706.9662797705 694972.5989830778 725264.46507276 641440.7011296311 720024.7413318009 0.9093932289273952 1.1259686271942166 1.127490864966059 1.2088001520305498 1.1587446282178462 0.9398384908664287 0.9652065534548365 1.0072771440204504 0.8908592501185223 1.0 19.45768695541319 2.7340228359501673 24.833425509254255 0.9653081625982625 1.1140806762600088 0.4569412796697543 0.07895633973581799 328.8197797808309 1799489.543946756 0.02568161840849117 0.02494392864984821 542.0293904891221 -2.7340228359501673 0.14877251366174638 TLTPGGHAEHDGKPFCHKPCYATLFGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTPGGHAEHDGKPFCHKPCYATLFGPK 28 2 P52943;P52943-2 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 0 ; 100.29 0.00045451 3380300000.0 2536900.0 3133600.0 3296200.0 3066900.0 2972300.0 4134000.0 4093800.0 599390.0 4837600.0 2903200.0 False True 2523241.61227609 3237899.9816987966 3760276.3089159913 3455169.225543654 3350804.786797648 3848226.3103892542 3895767.254165312 644119.525440749 3645438.300518915 2717915.290445429 0.9283738978717638 1.191317475228652 1.3835149028135214 1.2712571424466284 1.232858433291531 1.415874263600976 1.4333659580416318 0.23699028726358382 1.3412626630911215 1.0 21.37406906150058 1.7747770109869916 24.999999999618655 0.7807185328791926 1.2717120465802074 0.2794066617075103 0.2903796948843916 41.59141360972733 28722.764416239126 0.1276295057914942 0.07083266485221582 59.53563786045672 -1.7747770109869916 0.49099351370101485 TLTPGGHAEHDGQPYCHKPCYGILFGPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTPGGHAEHDGQPYCHKPCYGILFGPK 28 1 P52943;H0YFA4;H0YHD8;P52943-2 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 0 ; 81.839 0.0016710999999999998 6885500000.0 3218400.0 3882600.0 4152200.0 3869800.0 3820600.0 5276600.0 4774900.0 842570.0 5573900.0 3404200.0 False True 3201072.491997857 4011829.993918741 4736793.668430612 4359716.283220471 4307130.763529623 4911841.061780344 4543919.845110638 905446.8518837681 4200287.031433433 3186941.041517752 1.0044341738036593 1.2588340799703477 1.4863135548233288 1.367994018848932 1.3514937074199498 1.5412400159875952 1.4257935072895596 0.28411157912496465 1.3179682261812675 1.0 21.603740898795525 1.7754404270934998 24.99999999985499 0.7945529275295773 1.3582380800423535 0.37940290900109475 0.2768354106060214 36.68798356826655 24880.480099904213 0.1222132003153232 0.06783563409851293 59.62665233395906 -1.7754404270934998 0.5636851525127762 TLTPIIQEYFEHGDTNEVAEMLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTPIIQEYFEHGDTNEVAEMLR 23 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 0 ; 270.54 1.3561e-51 121122000.0 61477.0 78941.0 71917.0 81542.0 76699.0 76414.0 77263.0 66599.0 86414.0 69436.0 False True 61146.01466273682 81568.5034641577 82042.28848623007 91865.20883931043 86466.16301941017 71131.6800392076 73525.49351667755 71568.95556286958 65118.42758827545 65004.53503284962 0.940642289523909 1.2548125053573198 1.2621009971807433 1.4132123057704657 1.330155857213886 1.0942571930290965 1.1310825233888977 1.1009840394474428 1.0017520709188716 1.0 15.988252750631663 2.647843671303689 6.612271553223984 1.0781602786589717 1.2515170586880837 0.3412896681210167 0.12021165805149059 0.3094728398732833 19.057884109999083 0.04051904341785213 0.0381584810419198 444.4712467444337 -2.647843671303689 0.17335678002911203 TLTSGGHAEHEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTSGGHAEHEGK 13 0 P50238;K4DIB9;H3BRQ4 P50238 CRIP1 Cysteine-rich protein 1 0 ; 184.21 5.6087e-06 350980000.0 283280.0 335120.0 277760.0 257090.0 257670.0 361940.0 314870.0 140288.0 353740.0 268720.0 False True 281754.851955367 346274.26661568205 316866.19366679987 289637.5676399682 290482.74717025587 336919.9397151156 299638.5351797919 150757.00292802957 266565.5168731521 251570.05953723314 1.1199856313333123 1.3764526162320696 1.2595544726176078 1.1513197086042781 1.1546793275185576 1.3392688316522436 1.1910739128932173 0.5992644880131972 1.0596074801727333 1.0 17.940600705368382 1.8837380480748194 8.103845463412485 0.85051826429064 1.2361750989997147 0.5634152216092363 0.13693669152760754 0.1761207656117748 11.246382360136383 0.055338327501157435 0.03465102525046737 76.51349638482576 -1.8837380480748194 0.38565683470907464 TLTSGGHAEHEGKPYCNHPCYAAMFGPK ddPTM_BT-474_Trastuzumab_2h_R1 4 TLTSGGHAEHEGKPYCNHPCYAAMFGPK 28 1 P50238;K4DIB9;H3BRQ4 P50238 CRIP1 Cysteine-rich protein 1 0 ;;; 196.41 3.7076e-25 15839710000.0 12067680.0 13787090.0 14103050.0 12832480.0 12767370.0 17766580.0 16779200.0 3177220.0 20251340.0 12224300.0 False True 12002708.951725284 14245984.956178091 16088636.854091914 14457070.652256167 14393218.89136922 16538418.142630747 15967525.993231352 3414320.289996257 15260668.611053124 11444134.70825022 1.0488087791445149 1.2448284924423323 1.4058412684091715 1.2632733728513246 1.2576939417702735 1.4451436097399302 1.3952584795878156 0.2983467406701208 1.3334925706573093 1.0 23.448105048965413 1.7796542315726 24.999999999999716 0.8040907807232861 1.299974175388386 0.33757511923418637 0.2617336035837656 55.0390985377162 33496.38495277209 0.11405538427792451 0.06340189354317532 60.20800424175976 -1.7796542315726 0.4958833946650999 TLTSIVHLER ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTSIVHLER 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 137.89 7.908e-05 538350000.0 253365.0 337038.0 318621.0 333569.0 335562.0 349140.0 340057.0 306626.0 364496.0 361932.0 False True 252000.91099149783 348256.10608622694 363480.0672966214 375798.80119839957 378293.83166820114 325004.7735871561 323607.14376610774 329507.98913527885 274670.84479616804 338833.1898944254 0.743731483536241 1.0278098972380407 1.0727404461465995 1.1090967839233579 1.1164603791797107 0.959188129381369 0.9550632978632884 0.9724784907816967 0.8106373666692769 1.0 18.370215673046918 2.4999204653713885 23.248276588089304 0.9398447623464276 1.0247406448583924 0.10346953382928858 0.10881993641459554 701.0795535143409 714888.6705830882 0.036073938562944816 0.0337370285429328 316.16985886836454 -2.4999204653713885 0.08489588251196489 TLTTGSSAYLWKPPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 TLTTGSSAYLWKPPSR 16 1 Q9BQS8;Q9BQS8-4;Q9BQS8-3;Q9BQS8-2 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 TLTTGSSAYLWKPPS(1)R;TLTTGSSAYLWKPPS(1)R 182.15 1.3269e-09 2873400000.0 1633460.0 1062230.0 982820.0 766430.0 1021640.0 1089670.0 1159720.0 986040.0 1925670.0 1056180.0 True False 1624665.6328544687 1097585.683418405 1121192.5131754195 863459.9594161622 1151739.7982652995 1014343.6777072707 1103619.9130393758 1059623.311809665 1451114.4311559985 988773.6881588085 1.6431117173837342 1.1100474219355643 1.1339222782750091 0.8732634876480254 1.1648163903005444 1.0258603054012045 1.1161501628288895 1.0716540341832774 1.467590054765831 1.0 19.915280827238295 4.738918379536749 6.505944385467672 1.1005611961851984 1.6539846115450636 0.5535252278435334 0.14435669613526533 0.08401460112643067 21.637593190368815 0.032695257423625515 0.2046834307682965 54817.39324928067 -4.738918379536749 0.5534234153598652 TLTVHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TLTVHEK 7 0 Q2TAY7;Q2TAY7-2 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed 0 ;; 123.69 0.0042192 703670000.0 1356190.0 1421320.0 1302790.0 1354190.0 1286930.0 1553810.0 1535250.0 1431350.0 1920230.0 1596310.0 False True 1348888.423726875 1468627.7769939154 1486211.5079463227 1525630.3151517715 1450812.9072682762 1446398.7719753108 1460984.0922754654 1538164.605248026 1447015.046263732 1494432.12913025 0.9026093573830747 0.9827330049767113 0.9944991672597994 1.0208762816412937 0.9708121760689393 0.9678584552495573 0.9776182295583733 1.029263608072471 0.9682708354951426 1.0 20.51116594664084 4.740961228922679 3.5439517406165604 0.9927706098441876 0.8917051831475161 0.6282716565698095 0.020275201115622216 0.19070028192377209 4.2381650012509136 0.0051233050849677315 0.0516383179291602 55075.852595662596 -4.740961228922679 -0.10106542669667151 TLTVLGAQPDLLSYEDLELAVGHLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLTVLGAQPDLLSYEDLELAVGHLYR 26 0 Q96T76-5;Q96T76;Q96T76-8;Q96T76-9;H0Y746 Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog 0 102.16 1.3697e-08 0.0 21754.0 24230.0 24701.0 28140.0 24813.0 33468.0 31936.0 30437.0 27736.0 21618.0 False True 21636.87888109663 25036.480902655705 28178.68609505915 31702.521114740804 27972.78847182658 31154.435935197762 30391.133672632597 32708.363495954316 20900.8344433588 20238.32073189905 1.0691044562305614 1.2370829197895818 1.3923430934981047 1.5664600603335739 1.3821694419407382 1.5393785061471552 1.5016628145798174 1.6161599536467641 1.0327356068834068 1.0 14.30480196739447 4.447882190911608 2.289633256577689 1.4309001157941446 1.0660626326831035 0.1517706350125999 0.20419184819153652 0.48937025695329744 4.428037166263638 0.04935196818566544 0.27930150130177445 28046.72723940872 -4.447882190911608 -0.364837483111041 TLVLDFETEGERNS(ph)PNPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLVLDFETEGERNSPNPR 18 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 TLVLDFETEGERNS(1)PNPR 123.6 2.0362e-05 106430000.0 61257.0 73914.0 66367.0 84861.0 66007.0 73330.0 74349.0 88378.0 73193.0 77514.0 True False 60927.19911829254 76374.18280804339 75710.8967276949 95604.39389900566 74412.60019585931 68260.8697002526 70752.45482923849 94973.21513439078 55155.565885951815 72566.99015692575 0.8395993686184005 1.0524645247499531 1.0433241969106128 1.3174639556120715 1.0254331898696976 0.9406600653084662 0.9749950311599896 1.3087660784746848 0.7600641251163675 1.0 16.147025812524536 4.751481309954802 3.616480211676811 1.070158075895098 0.8102006889820272 0.12129768041192834 0.15739673639214463 0.5669565200999059 13.205498881139674 0.03741333119037196 0.4051259858995483 56426.26575424229 -4.751481309954802 -0.2599573869130707 TLVLSDKHS(ph)PQKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TLVLSDKHSPQKK 13 2 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 TLVLSDKHS(1)PQKK 114.27 0.00039442 464270000.0 566520.0 363150.0 414210.0 353780.0 369740.0 701590.0 615180.0 587850.0 1046900.0 624760.0 True False 563469.9192662889 375237.2282211891 472527.16762213834 398568.51172611985 416824.1973793241 653090.7346652141 585421.3931841842 631718.3520418159 788905.5227412862 584887.2819160542 0.9633820681147256 0.641554774437795 0.8078944135597698 0.681444996410991 0.7126573106767411 1.116609567104502 1.0009131866680026 1.0800685389710407 1.3488163397174255 1.0 19.1577990931681 2.7359815672103283 24.98196869398652 1.1022646806278598 0.7528719305959349 0.6700918360571468 0.12192985250610842 132.32062326210288 1281717.7947525582 0.03743939794635483 0.036816158975551426 544.4795429704275 -2.7359815672103283 -0.3493927500319248 TLVVHEK ddPTM_BT-474_Trastuzumab_2h_R1 9 TLVVHEK 7 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 ;;;;;;;; 109.01 0.0071238 28799090000.0 35883500.0 37174060.0 33707980.0 33237750.0 31887520.0 38244980.0 39360630.0 35246910.0 46283880.0 37120420.0 False True 35690307.223031685 38411376.11490619 38453770.58898557 37445645.7420567 35948206.65986137 35601194.5515991 37456605.954691686 37877213.40438242 34877837.94621736 34751363.015209526 1.0270189174281081 1.1053199869626638 1.1065399239781075 1.0775302748749156 1.0344401928674862 1.0244546245860235 1.0778456643066967 1.0899490010738517 1.003639423609154 1.0 25.050566228428103 3.346035667134557 6.254958979681648 1.048141790597137 1.083669735348291 0.2200012131443616 0.034477731652925996 0.3727338689668218 19.324414597281887 0.009892116179364495 0.01342053923530728 2218.3786002385123 -3.346035667134557 0.03552794475115384 TLYDHVDEVTCLAFHPTEQILASGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TLYDHVDEVTCLAFHPTEQILASGSR 26 0 Q05048;A0A0A0MSZ9 Q05048 CSTF1 Cleavage stimulation factor subunit 1 0 126.46 5.9788e-05 268600000.0 41190.0 61312.0 56472.0 57668.0 57205.0 55061.0 64846.0 50501.0 101130.0 55944.0 False True 40968.23761663923 63352.73285611332 64422.766736576705 64968.76288716675 64489.71766940071 51254.76266965232 61709.15124422387 54269.64105888192 76207.86657257262 52373.606023931934 0.7822306067281092 1.2096309126998914 1.2300616976256886 1.2404867225961012 1.2313400310823044 0.9786372671423778 1.1782490442996438 1.0362021097818546 1.455081525945525 1.0 15.676552320096546 4.742360627092295 24.653846793698158 1.1681609594324642 0.7822304262459924 0.4345276626808754 0.13371975767845845 286.87680252885684 1861116.7920865393 0.030388742788129038 0.22753038502897174 55253.60607327092 -4.742360627092295 -0.38593053318647186 TMELS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TMELSPR 7 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 T(0.003)MELS(0.997)PR;TMELS(1)PR 73.57300000000002 0.050903 608510000.0 901270.0 1118570.0 1092000.0 1062710.0 901300.0 982510.0 1014030.0 881200.0 1311360.0 1080900.0 True False 896417.66246051 1155800.9262601559 1245744.1081658471 1197248.9770378876 1016075.2125763635 914591.3962797654 964977.4949292215 946959.6186429332 988192.8993237312 1011916.0365949529 0.8858617020013941 1.1421905419637073 1.231074578438063 1.1831505122367374 1.0041101987032501 0.9038214270793848 0.9536141933043404 0.9358084904251593 0.9765562196730779 1.0 19.948658157169195 3.064886359802279 5.4015311353119095 0.9491518568164682 1.1204548523496745 0.41181047653421843 0.08798072264743706 0.1854846090962913 10.454565784895383 0.026357751815185158 0.031541741693689174 1161.1447417240208 -3.064886359802279 0.17130299553320627 TMETLHLEYFEEAVNYLLSHPEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TMETLHLEYFEEAVNYLLSHPEVK 24 0 Q86TX2 Q86TX2 ACOT1 Acyl-coenzyme A thioesterase 1 0 207.22 4.484e-25 144970000.0 157990.0 134210.0 130430.0 145160.0 139650.0 186470.0 186490.0 119880.0 211980.0 159430.0 False True 157139.39939433904 138677.09871834185 148793.41028211682 163537.2411164099 157433.5997296006 173579.76780316525 177468.7662390174 128826.05433830536 159740.3693864725 149255.04090510978 1.052824738390188 0.9291284091805452 0.9969071019632332 1.0956899018263655 1.0547958633416636 1.1629742402705188 1.189030301173176 0.863126990934984 1.0702510844376028 1.0 17.187420131997193 5.098928030349762 20.533113256723944 1.036649865258489 2.791380137352678 0.00032693232465197397 0.0941888747984294 9103.64012591856 2275943.985354589 0.02308735698390642 153036.02083636975 125582.18363727232 -5.098928030349762 1.7547302720941889 TMFAQVES(ph)DDEEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TMFAQVESDDEEAK 14 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK 237.3 2.8626999999999994e-17 561960000.0 1069355.0 814045.0 708918.0 644216.0 679996.0 954622.0 865187.0 932035.0 1295540.0 877611.0 True False 1063597.7114965082 841139.9957244052 808727.4923742813 725773.6795470454 766589.4599479382 888631.2280784744 823334.599474699 1001588.1844778326 976271.5263465908 821601.114619421 1.294542683269343 1.0237814685950553 0.9843310555255236 0.8833650133048269 0.9330433543813228 1.0815847401693253 1.0021098862019935 1.21906867779967 1.188254870855203 1.0 19.64807861331641 1.7509267812186966 24.999999999510052 1.1551679560106478 1.0197837539437897 0.14028533620504957 0.11674167553474005 5.5921244125271405 11323.59539748063 0.05461703686528545 0.030287780485400546 56.35426387687237 -1.7509267812186966 -0.13538420206685808 TMFAQVES(ph)DDEEAKNEPEWK ddPTM_BT-474_Trastuzumab_2h_R1 8 TMFAQVESDDEEAKNEPEWK 20 1 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 T(0.029)MFAQVES(0.971)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK 223.69 3.8124e-25 3787430000.0 2742540.0 1761040.0 1600122.0 1529455.0 1510187.0 2532500.0 2482440.0 2494030.0 4028280.0 2454530.0 True False 2727774.469364836 1819655.1518288385 1825405.2690902485 1723083.8461814453 1702500.3628703654 2357434.235863761 2362354.8933582837 2680147.183027727 3035564.370186519 2297879.79397114 1.187083187084718 0.7918843956080726 0.7943867533364866 0.7498581303957826 0.7409005324548095 1.025917126756966 1.0280585170539838 1.1663565648906125 1.321028357597649 1.0 21.131871899432827 2.25933860429787 1.783975657950324 1.1696580432455883 0.8442631436892579 0.4470133330528603 0.1447123667012679 0.30260747803635096 1.93490590325851 0.07303986928627741 0.047010073666714135 181.6931709120552 -2.25933860429787 -0.3253948995563304 TMGYSVTAPEDTRR ddPTM_BT-474_Trastuzumab_2h_R1 2 TMGYSVTAPEDTRR 14 1 O15305;H3BRM0;H3BV55 O15305 PMM2 Phosphomannomutase 2;Phosphomannomutase 0 ; 244.0 2.3256e-17 593430000.0 451702.0 500080.0 527854.0 528521.0 529460.0 560235.0 604950.0 512686.0 622950.0 535690.0 False True 449270.08662081056 516724.8604952559 602171.2550107831 595431.7044095211 596883.5926447145 521507.2731013364 575686.2573665793 550945.2326867572 469432.3196023345 501501.8055727177 0.8958493900290982 1.0303549354227217 1.20073596609109 1.1872972296271893 1.190192310400698 1.039891117651655 1.147924595623624 1.098590726024555 0.9360530996817457 1.0 18.935895369463932 -0.8671793119282603 7.375860914024328 1.0000240799881457 1.091597316092944 0.04467970181588743 0.10146318348187507 1.4771821563372148e-09 4.524502579730237e-19 0.09913201643286089 0.02336564035079074 0.13577527405700657 0.8671793119282603 0.09157323610479828 TMHHLLLEVEVIEGTLQCPESGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TMHHLLLEVEVIEGTLQCPESGR 23 0 F5GYQ2;Q9UI30;Q9UI30-2 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 0 ; 230.42 2.2086e-33 351350000.0 65145.0 76898.0 75564.0 71954.0 72700.0 71527.0 77020.0 31460.0 85317.0 63243.0 False True 64794.26655828992 79457.50344417742 86202.7543859378 81063.36902239021 81957.91407334029 66582.50684644707 73294.24835502767 33807.70495064307 64291.76853922854 59206.7775949436 1.0943724551532341 1.342033913545791 1.4559609201447188 1.3691569160709265 1.3842657446085984 1.1245757589099625 1.237936792582462 0.5710107241764553 1.0858852846049707 1.0 15.853474714912675 1.891877957531177 7.328029459370198 0.8484710019543519 1.3011977483406973 0.5568716887407772 0.16359769692581766 0.17159158507781141 10.305439633724857 0.06949277906635754 0.04313213962910975 77.96109987803729 -1.891877957531177 0.45272674638634547 TMIIS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 6 TMIISPER 8 0 O75533;B4DGZ4;A0A494C1M2;O75533-2 O75533 SF3B1 Splicing factor 3B subunit 1 1 TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER 192.21 0.00018581 7453980000.0 2818490.0 3076760.0 2633110.0 2704860.0 2876850.0 2922070.0 2594660.0 2710380.0 2950360.0 2595990.0 True False 2803315.5630036765 3179168.096659305 3003829.0005975952 3047294.9986644527 3243199.795074122 2720074.1787129026 2469146.3832362527 2912642.31863077 2223283.3107985314 2430311.6956611457 1.1534798470535519 1.3081318344207036 1.2359850820618419 1.2538700299656262 1.3344789480560175 1.1192285267643125 1.0159793032492248 1.1984645112932357 0.9148140605864574 1.0 21.212709925520155 2.5608972322293813 5.166547970517546 1.0638575984171526 1.2578198341626574 0.6215117743702983 0.08165996064415679 0.16030268126829528 7.255257328457942 0.02627868173884838 0.024461038261808694 363.8289325408059 -2.5608972322293813 0.19396223574550486 TMIIS(ph)PERLDPFADGGK ddPTM_BT-474_Trastuzumab_2h_R1 11 TMIISPERLDPFADGGK 17 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 TMIIS(1)PERLDPFADGGK;T(0.002)MIIS(0.998)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK;T(0.159)MIIS(0.841)PERLDPFADGGK;T(0.082)MIIS(0.918)PERLDPFADGGK;T(0.002)MIIS(0.998)PERLDPFADGGK;T(0.08)MIIS(0.92)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK 246.16 7.5144e-21 4967454000.0 5106470.0 5560310.0 4819530.0 4981860.0 5293950.0 6079360.0 5696710.0 5825470.0 8018340.0 5948010.0 True False 5078977.332902152 5745381.5570716215 5498077.931894267 5612562.965198387 5968103.152800004 5659108.152474127 5421138.373754469 6260196.152537282 6042327.547251281 5568402.909452441 0.912106651672155 1.0317826584205603 0.9873707095729735 1.007930470632968 1.0717800507339486 1.0162892744107492 0.9735535416361505 1.1242354862487611 1.085109616797726 1.0 22.408832172471836 7.0106725010339686 0.44753986879256885 1.0551046857099795 9.70258645232798e-11 0.3724109050754473 0.04574005579279042 37.740492770584716 1.098922661055915 0.02878714082710796 32.19540198531841 10248787.79593852 -7.0106725010339686 -1.0551046856129536 TMIIS(ph)PERLDPFADGGKT(ph)PDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TMIISPERLDPFADGGKTPDPK 22 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 T(0.445)MIIS(0.555)PERLDPFADGGKT(1)PDPK 71.118 0.031639 58901000.0 191490.0 71020.0 61070.0 65539.0 49183.0 107460.0 67651.0 98270.0 297740.0 88025.0 True False 190459.03911653918 73383.85776750333 69668.12517004415 73836.23068013493 55446.16351951988 100031.54313363081 64378.46267808331 105603.40640494904 224365.9665115967 82407.16913800596 2.3111950223357445 0.8905033207075536 0.8454134015133083 0.8959928056317841 0.6728317948486385 1.2138694264100929 0.7812240530950618 1.281483243625281 2.722651061291216 1.0 16.33048223188438 1.4387026309713928 10.974248816660339 1.9093916605960073 1.0562834279116344 0.2127228072323687 0.5838202827959437 0.45525671300184933 123.15113414230173 0.31930405746432083 0.13516370433887565 27.460132659201978 -1.4387026309713928 -0.8531082326843729 TMIIS(ph)PERLDPFADGGKTPDPK ddPTM_BT-474_Trastuzumab_2h_R1 5 TMIISPERLDPFADGGKTPDPK 22 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 T(0.132)MIIS(0.868)PERLDPFADGGKTPDPK;T(0.007)MIIS(0.993)PERLDPFADGGKTPDPK;T(0.028)MIIS(0.972)PERLDPFADGGKTPDPK;T(0.192)MIIS(0.782)PERLDPFADGGKT(0.026)PDPK;T(0.205)MIIS(0.795)PERLDPFADGGKTPDPK 121.3 1.4347e-05 1004062000.0 1604468.0 1880322.0 1487882.0 1623994.0 1539592.0 2087506.0 2063114.0 1884744.0 3750800.0 2099817.0 True False 1595829.7225611524 1942907.3810913484 1697362.8526978183 1829591.473888146 1735649.9153232756 1943201.623680559 1963313.2939591613 2025393.167816109 2826465.5981450165 1965804.881316223 0.8117945670643821 0.9883520992126424 0.8634442150542089 0.9307085821575161 0.8829207475368334 0.9885017796778846 0.9987325357766975 1.030312411504436 1.4378159424716304 1.0 20.906688701416105 1.5014543140415904 3.6453808505359313 1.2250996113845458 0.9268394031210002 0.4987993080488726 0.11524551970573024 0.14473142609774375 4.025821965233412 0.07161008976725797 0.027443484434625978 31.728848720957238 -1.5014543140415904 -0.2982602082635456 TMIQSPSGVILQEAADVHAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TMIQSPSGVILQEAADVHAR 20 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 218.69 9.7198e-25 435440000.0 162240.0 206520.0 157890.0 169590.0 174480.0 209610.0 196570.0 172720.0 184170.0 168150.0 False True 161366.51786655837 213393.89335602344 180119.53959551814 191060.07661154546 196698.99377601652 195120.15406886608 187061.15812967787 185609.24345438884 138783.77125156455 157418.5230395424 1.0250796078554507 1.3555831247534982 1.1442080392932756 1.2137077195391583 1.2495288990013402 1.2394993314722773 1.1883046195439748 1.17908134233838 0.8816228774850281 1.0 17.264245783547832 1.2987532952991645 6.006633868242499 0.9417709908373526 1.2060367912401566 0.6044207963873274 0.08359664374411648 0.10555810610995019 7.2170576158911315 0.053676748835790766 0.018777577059634915 19.895428410687547 -1.2987532952991645 0.264265800402804 TMLAGVILEDYLDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 TMLAGVILEDYLDIK 15 0 P51800-2;P51800-3;P51800 P51800-2 CLCNKA Chloride channel protein ClC-Ka 0 ; 68.513 0.030305 1287590000.0 2866590.0 1369090.0 811490.0 632030.0 610270.0 1009510.0 989540.0 837030.0 2073330.0 924260.0 False True 2851156.5979480892 1414659.3330176165 925740.7384024765 712044.9331965033 687984.2671463193 939724.949830927 941672.1697901065 899493.4289522172 1562385.6026986274 865272.9355012035 3.295095086149408 1.6349284427787918 1.0698829241275731 0.8229136772711562 0.7951066523857111 1.0860445430280303 1.0882949542905203 1.039548785183246 1.8056563872457494 1.0 19.722795752370793 4.734028677399696 2.2638728727331725 1.0681356641219102 3.8471619330970506 0.8644092595723208 0.2627482666935046 0.1984587299989532 1.194469293027786 0.0664609310789919 1.0965868818257973 54203.6681069024 -4.734028677399696 2.7790262689751404 TMLEDLGMDDEGDDDPVPLPNVNAAILK ddPTM_BT-474_Trastuzumab_2h_R1 2 TMLEDLGMDDEGDDDPVPLPNVNAAILK 28 0 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2;E5RGM3;E5RI56 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ; 198.39 5.106699999999999e-25 160622000.0 124717.0 131741.0 111274.0 109249.0 117409.0 135370.0 130943.0 122475.0 171313.0 160927.0 False True 124045.53752936132 136125.91954588387 126940.41198905346 123079.91219844754 132360.3402123358 126012.19052670378 124608.78683916369 131614.7064154484 129095.206626591 150656.50108346366 0.8233666429080291 0.9035515796989746 0.8425817078994056 0.8169571927749821 0.8785571101177254 0.8364205302822814 0.8271052755309275 0.8736078793077365 0.856884407232266 1.0 17.200903403449566 0.0006361451412852217 0.964259853004668 1.001735868337324 0.8499373425565317 0.7490194343886033 0.025946508698004345 3.3679288313989235 2.7949556019609076 0.043304784756876775 0.00766168991946104 1.0014658516310568 -0.0006361451412852217 -0.15179852578079234 TMLELLNQLDGFDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TMLELLNQLDGFDSR 15 0 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ; 169.62 2.7610000000000003e-06 263110000.0 252710.0 275560.0 265270.0 276980.0 271390.0 274830.0 271920.0 254610.0 303170.0 286760.0 False True 251349.4374387202 284731.8480204625 302617.71023182623 312045.6396006009 305949.9078454448 255831.648980232 258766.19076472474 273610.2910833828 228457.81576986884 268458.7312924124 0.9362684395798015 1.0606168279560444 1.127241080127906 1.1623598088926095 1.139653407332079 0.9529645310793539 0.9638956033166592 1.019189391852408 0.850997897032548 1.0 18.034340801992805 2.7276372818148897 24.665644366778043 0.9641643899771257 1.0904798004130698 0.44319890867094247 0.07131144515147597 608.3246826204461 1373636.730785936 0.02392486715618189 0.022760612544548753 534.1180832529299 -2.7276372818148897 0.12631541043594408 TMLITHMQDLQEVTQDLHYENFR ddPTM_BT-474_Trastuzumab_2h_R1 4 TMLITHMQDLQEVTQDLHYENFR 23 0 Q15019-2;Q15019-3;Q15019;B5MCX3 Q15019-2 SEPT2 Septin-2 0 ;;; 193.54 4.0725e-18 685425000.0 118964.0 151788.0 142699.0 162534.0 163638.0 160076.0 141158.0 134070.0 150641.0 154426.0 False True 118323.51104214294 156840.1718222163 162789.77883805687 183110.7877350135 184476.32934158534 149010.32289837213 134329.64826407412 144074.98419366564 113517.54403598256 144570.40046924973 0.8184490784979909 1.084870563498068 1.126024264369956 1.2665856021749164 1.2760311152407968 1.0307111442917167 0.929164253734264 0.9965731832105601 0.7852059873080857 1.0 17.141412677711518 2.4532373197945248 5.069809210435603 0.9378467271872161 1.1249672351855848 0.3101085436175144 0.13016294903624873 0.2379583881473607 16.541304144348146 0.04753915134376679 0.040556697898811896 283.9470230304507 -2.4532373197945248 0.18712050799836877 TMLTHSSKLQSGLMMSEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TMLTHSSKLQSGLMMSEQK 19 1 F5GX61 F5GX61 RAB6A 0 49.559 0.090564 507670000.0 40947.0 143100.0 158390.0 282820.0 238520.0 79680.0 89563.0 99336.0 30261.0 71027.0 False True 40726.545901639394 147862.99699422345 180689.93524944005 318624.9830018118 268894.1081811983 74171.9091465447 85230.49552611458 106748.9567379873 22803.582026625354 66493.99605072594 0.6124845598175591 2.2237044812500657 2.7173872226237994 4.7917857539911415 4.043885525785943 1.115467764788291 1.2817773120613059 1.6053924125202563 0.34294197041834124 1.0 16.02093646063117 2.713693909093357 23.933548069789982 1.1651599002324102 2.9389233000311896 0.4128392206717981 1.0742517788334986 506.0618201759305 487070.04567012744 0.37816742848715745 0.3567144613043844 517.2421509984533 -2.713693909093357 1.7737633997987794 TMPGGNDHEIFTDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TMPGGNDHEIFTDPR 15 0 O15305;H3BRM0;H3BV55 O15305 PMM2 Phosphomannomutase 2;Phosphomannomutase 0 ;; 79.771 0.018954 2915090000.0 2555830.0 3045760.0 2949610.0 2986690.0 3000120.0 3078280.0 3080930.0 2766110.0 3293500.0 2996510.0 False True 2542069.695259408 3147136.2803991977 3364889.4495302825 3364804.647767777 3382167.4988955967 2865485.7490916857 2931893.6456044605 2972531.1742219743 2481861.055638959 2805270.1663587233 0.9061764266929938 1.1218656648975172 1.1994885518987115 1.1994583224528912 1.2056476910691614 1.021465163482319 1.0451377128535524 1.0596238500908304 0.8847137382352184 1.0 21.41970828807151 2.6422002996177962 7.652158469259611 1.0131267912045325 1.1342169217910547 0.3061206218772953 0.09255211423304134 0.3895905511044399 27.463171848537034 0.03110147413978703 0.029292576146474923 438.73299781233345 -2.6422002996177962 0.12109013058652218 TMSS(ph)DDEDCSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TMSSDDEDCSAK 12 0 Q9NVR2;H0YBW3 Q9NVR2 INTS10 Integrator complex subunit 10 1 TMS(0.027)S(0.973)DDEDCSAK;TMS(0.089)S(0.911)DDEDCSAK;TMS(0.045)S(0.955)DDEDCSAK 296.28 2.8967999999999997e-36 296990000.0 1322960.0 1106090.0 912980.0 894250.0 915910.0 1256860.0 1167010.0 1123830.0 1694070.0 1212520.0 True False 1315837.3303546738 1142905.537004476 1041519.6482355813 1007461.9583104815 1032545.7094761096 1169976.2265301982 1110557.2678888715 1207695.9012931092 1276589.1478749947 1135135.9355094002 1.1591892117873817 1.006844644110037 0.9175285669801231 0.8875253851058604 0.9096229598376229 1.03069261568674 0.9783473795061391 1.0639218295482358 1.12461345636293 1.0 20.1144336437058 1.710818540116923 4.237924215758376 1.0725360004087132 0.9773388839013524 0.16900403648072593 0.07811035054484172 0.2894194832735208 12.07890189205875 0.04447818299051336 0.021646489736099995 51.382891522167434 -1.710818540116923 -0.09519711650736085 TMVGFGPEDDHFVAELTYNYGVGDYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TMVGFGPEDDHFVAELTYNYGVGDYK 26 0 Q9HC38-2;F6TLX2;Q9HC38;I3L3Q4;Q9HC38-3 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 ; 274.11 1.4189e-60 624690000.0 498460.0 433980.0 402180.0 370600.0 367690.0 467220.0 473060.0 455650.0 566270.0 474780.0 False True 495776.34674411203 448424.76195355057 458803.4481887738 417517.92200152617 414513.14203062607 434922.18111757794 450176.2805353078 489652.9167438178 426720.34612924635 444479.1339203913 1.1154097209722074 1.0088769702153575 1.0322271917289778 0.9393420076189807 0.9325817803291249 0.97849853441146 1.012817579454555 1.1016330787566675 0.9600458459444225 1.0 18.761756167741204 -3.1033474282691076 10.328194979267074 1.0003224702508113 1.0107666757546696 0.0 0.05883818400155085 0.0 0.0 0.0 0.01378132470545884 0.0007882292951714319 3.1033474282691076 0.010444205503858273 TMYLEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 TMYLEDR 7 0 P20340-2;P20340;P20340-4;J3KR73;Q9NRW1-2;Q9NRW1;P20340-3;C9JB90;F5GX61 P20340-2;F5GX61 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B 0 ;;; 151.29 0.0043996 2749070000.0 2521620.0 3213540.0 3156430.0 2668350.0 2944220.0 3366360.0 2743670.0 2510530.0 3625180.0 2886230.0 False True 2508043.8780983184 3320500.7362740454 3600827.907818612 3006162.8364079096 3319148.965240852 3133651.4567590617 2610948.2002627742 2697878.49681303 2731802.963923259 2702028.33037418 0.928207839238681 1.228891902778169 1.3326388429539395 1.1125578524158601 1.228391622667114 1.159740414833145 0.9662919410993768 0.9984641783675987 1.0110193639401834 1.0 21.365611370514813 2.272778810095092 7.087400454694039 0.9932896564663657 1.1767623157640394 0.4176529404988979 0.098453358237118 0.175118688507624 26.72894118622018 0.03441021223017129 0.028272497131744793 187.40398004222374 -2.272778810095092 0.18347265929767376 TNDAS(ph)SESIASFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNDASSESIASFSK 14 0 A0A1W2PPI1;J3KSA2;A0A1W2PR65;J3QQS3;A0A1W2PRQ6;J3QS66;A0A1W2PS04;A0A1W2PP78;A0A1W2PNV7;A0A1W2PPG2;A0A1W2PPJ9;A0A1W2PQF1;Q7RTN6-6;Q7RTN6 A0A1W2PPI1 STRADA STE20-related kinase adapter protein alpha 1 TNDAS(0.967)S(0.033)ESIASFSK 144.97 9.133e-06 114400000.0 222600.0 202370.0 186600.0 181910.0 178440.0 243350.0 231550.0 216830.0 284220.0 247000.0 True False 221401.54633318493 209105.76311475187 212871.65804372437 204939.78734834748 201163.2763032577 226527.787284283 220349.041893101 233010.95564043024 214177.78935287846 231236.24853266095 0.9574690289178994 0.9042949124181832 0.920580831917697 0.8862788107349907 0.8699469809762306 0.9796378756433903 0.9529173876991773 1.0076748655067314 0.9262293031995238 1.0 17.819008046493288 2.7204193909017764 24.845031473736512 0.9748856470342464 0.9070481250555827 0.540715562686642 0.03019823472512313 568.5528255009962 778651.8349822089 0.009607889953764687 0.009076205447256402 525.3145027994535 -2.7204193909017764 -0.06783752197866366 TNEGVIEFR ddPTM_BT-474_Trastuzumab_2h_R1 4 TNEGVIEFR 9 0 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 ;;; 162.31 0.00014859 2235130000.0 1797060.0 2145890.0 2089510.0 2000550.0 2035500.0 2092600.0 2187350.0 1954930.0 2404740.0 2049210.0 False True 1787384.8286321368 2217314.6514321025 2383694.845653496 2253819.42487899 2294708.8596462747 1947943.4874505454 2081539.5240115507 2100816.803533396 1812124.0488651094 1918427.663383054 0.9316925848953671 1.1557978931152273 1.2425252675151515 1.1748263788609514 1.1961404140720464 1.0153854245488942 1.0850237221563293 1.0950722008609424 0.9445881559430376 1.0 20.871492936742847 2.732124678890339 24.97515717877862 1.0436346977644018 1.1486720648424642 0.2829015389436593 0.08703314684107297 733.1812774722983 2845159.693005545 0.028497413550230537 0.027437893580351043 539.6655294847001 -2.732124678890339 0.10503736707806244 TNHIGHTGYLNTVTVSPDGSLCASGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNHIGHTGYLNTVTVSPDGSLCASGGK 27 0 P63244;J3KPE3;D6RHH4;D6R9L0;H0Y8W2;D6RAC2;D6R9Z1;D6RFX4;D6REE5;H0YAM7;H0Y8R5 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 130.6 2.696e-05 893180000.0 61000.0 58888.0 50567.0 54252.0 46031.0 70188.0 58390.0 14006.0 70525.0 52898.0 False True 60671.582777737145 60848.05148145225 57686.39406375676 61120.2976374171 51892.775002887574 65336.06876478006 55565.45262853885 15051.198841026924 53145.058736583494 49522.004351743744 1.2251439248460227 1.2287073650989995 1.164863878570487 1.234204843634625 1.0478730754576244 1.3193340944100838 1.12203561539775 0.3039295165462532 1.0731604956678653 1.0 15.595782086868216 1.9677263286026 22.417995691573854 0.7145116881855885 1.199058379250754 0.434210893500533 0.20493842065405166 130.2895590715063 90501.25600249655 0.07893835660624503 0.05101806842648673 92.83811814540385 -1.9677263286026 0.48454669106516557 TNHIYVSSDDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNHIYVSSDDIK 12 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 121.76 0.00023134 0.0 235190.0 212690.0 183950.0 194870.0 178080.0 248180.0 253130.0 103440.0 291470.0 210530.0 False True 233923.76317206552 219769.25807617983 209848.56107793725 219540.52201952873 200757.43243714495 231023.90075287977 240885.13484949552 111159.21805767689 219641.12399790136 197093.7951561986 1.186865182572992 1.1150490957973116 1.0647141931161779 1.1138885516184864 1.0185882933455255 1.1721520739391682 1.2221852781240112 0.5639914639097705 1.1143989785362538 1.0 17.588522833069415 1.7672901039750264 24.999999997593992 0.8492373605653611 1.1217201978252607 0.34864124971946475 0.1432751055533543 18.87443738082049 16433.739671512038 0.062238827036386654 0.03451919897254036 58.51808480381219 -1.7672901039750264 0.2724828372598995 TNHRLS(ph)LPMPASGTSLSAAIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNHRLSLPMPASGTSLSAAIHR 22 1 Q14451;Q14451-3;Q14451-4 Q14451 GRB7 Growth factor receptor-bound protein 7 1 T(0.084)NHRLS(0.916)LPMPASGTSLSAAIHR;T(0.148)NHRLS(0.852)LPMPASGTSLSAAIHR 290.94 1.3267999999999995e-55 9349800000.0 1039240.0 1007980.0 979280.0 1120180.0 1005210.0 1177790.0 1183550.0 339800.0 1447490.0 1037230.0 True False 1033644.8473104177 1041530.0049632227 1117154.11194565 1261994.6731453557 1133217.5351535408 1096372.1495194396 1126297.1648999352 365157.6014694383 1090775.4848722748 971033.0933827204 1.0644795263460909 1.0725999062863214 1.1504799574378028 1.2996412601645044 1.167022568927934 1.1290780478964773 1.1598957569780988 0.376050624801431 1.123314429040123 1.0 19.88916093882027 1.8193653086672328 24.999999996302346 0.764227546689863 1.1518629030142415 0.34436664684320917 0.19281749835728268 79.76975786287764 24683.357468013048 0.07575213814891743 0.04884071305040511 65.97285954566846 -1.8193653086672328 0.3876353563243785 TNHSNIMDDPFIR ddPTM_BT-474_Trastuzumab_2h_R1 4 TNHSNIMDDPFIR 13 0 P61201;P61201-2;B4DIH5;H0YMC2 P61201 COPS2 COP9 signalosome complex subunit 2 0 ;;; 153.09 4.0794e-05 848370000.0 637494.0 725720.0 670970.0 665461.0 663510.0 734330.0 724870.0 316271.0 841730.0 622198.0 False True 634061.8031362413 749875.1514929964 765436.7438242119 749708.2943687467 748004.0655681163 683567.4955268841 689805.2688276921 339872.7480115971 634296.92010414 582488.790949492 1.0885390637349126 1.2873640886216102 1.3140797826796007 1.2870776331106333 1.2841518621308134 1.1735290123139155 1.1842378420763562 0.5834837567562183 1.088942705781853 1.0 19.151870762148494 1.908309829976102 8.227690762027594 0.8515467853206776 1.243177501024733 0.5598478009059922 0.13771749200554373 0.1939892426724758 15.8146717361627 0.05582022514287868 0.03504514360518898 80.96733221353638 -1.908309829976102 0.3916307157040554 TNIIPVLEDAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TNIIPVLEDAR 11 0 A6NHQ2 A6NHQ2 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 0 ;; 142.08 8.799e-05 346404000.0 229250.0 291281.0 257911.0 265185.0 293064.0 288057.0 265215.0 259704.0 345697.0 280506.0 False True 228015.74347206936 300976.11200191715 294222.6269974007 298757.39380996954 330383.9632735815 268144.297603241 252385.53723031218 279084.43123019126 260504.6064524738 262603.86692673084 0.8682878365065663 1.1461221631054372 1.1204047771295456 1.13767324642377 1.2581077618547103 1.0210980544245223 0.9610884263967457 1.0627582696947058 0.9920059803428456 1.0 18.002528634974325 2.5147192290222624 24.98952461500142 1.0104489544388513 1.113759680215144 0.21456596667729733 0.09400967563041518 852.6540170911819 566716.2005128874 0.030209000812141392 0.028474361133792155 327.1291378178085 -2.5147192290222624 0.10331072577629263 TNILQYASTRPPTLS(ph)PIPHIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNILQYASTRPPTLSPIPHIPR 22 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 TNILQYASTRPPTLS(1)PIPHIPR;TNILQYASTRPPT(0.001)LS(0.999)PIPHIPR 279.66 8.123399999999997e-46 2218900000.0 1513950.0 1194880.0 1206870.0 1140590.0 877940.0 1745850.0 1706190.0 1300490.0 1745070.0 1707150.0 True False 1505799.0614156586 1234650.8584797867 1376786.805697909 1284988.5770526726 989740.4550419298 1625163.4987888425 1623655.07142125 1397539.167554412 1315020.8812399816 1598198.225435353 0.9421854169594485 0.7725267359394451 0.861461853596333 0.8040232785908886 0.6192851670651319 1.0168722958919219 1.0159284659316667 0.8744467021127614 0.8228146298196314 1.0 20.608014926974775 2.7034976667849295 24.998646779878246 0.9388997554230566 0.8020253744749608 0.3689453234441483 0.09530060737221623 730.8915493281793 521099.3118634614 0.03139181265882832 0.029597759801541154 505.2399305686043 -2.7034976667849295 -0.1368743809480958 TNIVTASVDAINFHDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNIVTASVDAINFHDK 16 0 O00154-6;O00154-4;O00154-7;O00154;O00154-5;K7EKP8;O00154-2;O00154-3 O00154-6 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase 0 178.06 2.8483e-09 553590000.0 624080.0 510410.0 519170.0 459660.0 491080.0 616160.0 583630.0 552240.0 800900.0 614770.0 False True 620720.022621806 527398.6883006396 592264.6232934648 517852.9088699987 553616.127140797 573566.3094846259 555397.5872168887 593450.9530178994 603528.9265101703 575534.8522689235 1.0785098768124113 0.9163627297660301 1.029068215345409 0.8997768020971691 0.9619159030218297 0.996579628885137 0.9650112152675933 1.0311294801319946 1.0486401025600554 1.0 19.134543769732783 1.7017599453246206 6.121971036183269 1.0299232060571613 0.9748494021750965 0.1619897639750495 0.049751584411305935 0.21208596704030758 18.378038983847027 0.02358346970756231 0.011983108903959249 50.32223775834946 -1.7017599453246206 -0.05507380388206473 TNKLPGS(ph)PGLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TNKLPGSPGLSK 12 1 Q8N9U0;Q8N9U0-2 Q8N9U0 TC2N Tandem C2 domains nuclear protein 1 TNKLPGS(1)PGLSK;TNKLPGS(0.994)PGLS(0.005)K 114.29 0.00065012 2140240000.0 2163780.0 2027600.0 2057230.0 2087110.0 2170630.0 2967470.0 2556920.0 2437100.0 4143940.0 2572240.0 True False 2152130.4488985604 2095087.4402899176 2346870.1022362886 2351337.912003791 2447046.8641680153 2762335.7835730044 2433232.0112170544 2618968.777343049 3122721.51295112 2408077.4409945398 0.8937131390632218 0.8700249438093831 0.9745824873750852 0.9764378304348404 1.0161827948346134 1.1471125207801272 1.0104459141530455 1.0875766421620605 1.2967695555760161 1.0 21.199450357577234 3.4966610673784984 0.703030832349826 1.1179051630819505 0.859112549098949 0.544208591300097 0.07979662258753394 0.6924243545296224 0.6727740489301646 0.0426208687248866 0.11251619345558535 3138.0587304331366 -3.4966610673784984 -0.2587926139830016 TNKS(ph)PEAKPLPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNKSPEAKPLPGK 13 2 P46087-2;P46087;P46087-4;P46087-3;F5H359;F5GWB7;F5H709;F5H5X6 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 T(0.015)NKS(0.985)PEAKPLPGK 143.02 2.1195e-05 358920000.0 734880.0 349140.0 373440.0 293980.0 279650.0 659230.0 612620.0 535150.0 1082300.0 632870.0 True False 730923.4877328434 360760.9138404128 426017.106001331 331197.8378575511 315261.76988458843 613658.9817605001 582985.2301643348 575085.6104366384 815581.6670769834 592479.6947727329 1.2336684179754305 0.6089000467413415 0.719040854496702 0.5590028498522537 0.5321056108184746 1.0357468571068773 0.9839750379765503 0.9706418895203376 1.376556317917071 1.0 19.17640618582719 2.659808240651169 7.9737876592167 1.0571404186347855 0.7139517693492902 0.3894119079887315 0.21370748730924305 0.33669899228283934 30.99677951000785 0.06883852993876079 0.06487126397411817 456.8864104320756 -2.659808240651169 -0.3431886492854953 TNKS(ph)PEAKPLPGKLPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNKSPEAKPLPGKLPK 16 3 P46087-2;P46087;P46087-4;P46087-3;F5H359;F5GWB7;F5H709;F5H5X6 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 T(0.069)NKS(0.931)PEAKPLPGKLPK 58.69300000000001 0.07701000000000001 488540000.0 973570.0 586660.0 552730.0 496090.0 430910.0 1041700.0 1005500.0 914510.0 1910700.0 987100.0 True False 968328.4072937956 606186.6234565414 630549.5795847151 558894.9431347463 485783.83429632825 969689.7308980371 956860.1236169877 982755.3799876849 1439833.587068275 924102.432901173 1.0478583031685973 0.6559734093042576 0.6823373222870288 0.60479761034729 0.5256818043117086 1.0493314338040916 1.0354481165177474 1.0634701792769594 1.5580887310814562 1.0 19.817693251671084 2.5878917983156806 4.609607317449774 1.1425066983596484 0.6952795451138868 0.5640405910450714 0.19380127922422122 0.1756418750069228 5.957750502348966 0.06466272905307142 0.060282081827151876 387.161174181539 -2.5878917983156806 -0.44722715324576157 TNLDESDVQPVKEQLAQAMFDHIPVGVGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNLDESDVQPVKEQLAQAMFDHIPVGVGSK 30 1 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 121.5 1.0948e-05 342790000.0 578450.0 524160.0 578680.0 550730.0 520920.0 738430.0 728200.0 685190.0 1023400.0 737650.0 False True 575335.6894718371 541606.3487385886 660153.1140232722 620452.3615323816 587256.0742652607 687384.0721772466 692974.184005858 736322.3571243205 771196.7828574207 690572.545466062 0.8331285297239084 0.7842859556095771 0.9559504187612035 0.8984607998188563 0.8503901264550362 0.9953828554150476 1.0034777498114629 1.0662491029488903 1.116749844633551 1.0 19.397433453708775 2.4879133207375257 1.1997200939654207 1.0687215698898624 0.8584721539374333 0.7346961146602962 0.05214017365352289 0.23779572347625 0.6916512288492025 0.029549345674411514 0.021479201213519403 307.54829289838233 -2.4879133207375257 -0.2102494159524292 TNLEFLQEQFNSIAAHVLHCTDSGFGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNLEFLQEQFNSIAAHVLHCTDSGFGAR 28 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 ; 234.52 2.5225999999999998e-45 682970000.0 324860.0 449980.0 424740.0 437620.0 438780.0 529640.0 470780.0 202582.0 516880.0 398680.0 False True 323110.9898553388 464957.3122813463 484539.70009373757 493022.64712980995 494656.0321471831 493027.233438453 448006.5728457528 217699.6975305524 389501.84983715345 373235.9010728792 0.8657017959058745 1.2457464861895944 1.298213003360373 1.3209411144871104 1.325317395045004 1.3209534024493077 1.2003308673092348 0.5832764128658772 1.0435808793246235 1.0 18.50972823824897 1.872298242271792 8.01931441667223 0.8389067484879131 1.2429334719668508 0.4586171797795948 0.17254452547674143 0.21181518030585628 12.801216377118921 0.07202369491193877 0.045018728798472164 74.52435780070887 -1.872298242271792 0.40402672347893764 TNLESILSY(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TNLESILSYPK 11 0 H9KV48;E9PGN7;P05155-2;P05155;P05155-3 H9KV48 SERPING1 Plasma protease C1 inhibitor 1 TNLESILS(0.004)Y(0.996)PK;TNLESILS(0.004)Y(0.996)PK 85.81299999999997 0.08670499999999999 218958000.0 112315.0 300800.0 253940.0 314350.0 295620.0 208410.0 212750.0 176023.0 110624.0 225720.0 True False 111710.30851936973 310811.9461625604 289692.5447139518 354146.6777689683 333265.4547229829 194003.10724436992 202458.46971607555 189158.7300866831 83362.19748565483 211314.3563513855 0.5286451448363096 1.4708510653470446 1.3709080145611812 1.6759234151610272 1.5771074927290325 0.9180782157638667 0.9580914104076115 0.8951532368777596 0.39449377186202833 1.0 17.689031259378236 2.606963379177121 5.3635226923441985 0.8323246366363094 1.3533839777892265 0.35716814571517497 0.33010849124326463 0.2564635885346592 10.145655430296799 0.10917391121065673 0.10239635044489691 404.54177826048135 -2.606963379177121 0.5210593411529171 TNLSVHEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNLSVHEDK 9 0 P33176;Q12840;J3KNA1 P33176;Q12840 KIF5B;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5A;Kinesin-like protein 0 110.84 0.0022221 1027500000.0 871670.0 850700.0 939720.0 821480.0 964950.0 1229000.0 1138300.0 1072600.0 1456500.0 1131500.0 False True 866977.0255716421 879015.0352409901 1072024.4078073353 925479.2837717572 1087830.6627932563 1144042.1227548108 1083236.080271722 1152642.8585524408 1097565.0911000906 1059286.701274114 0.8184536108391042 0.8298178710104711 1.012024796042375 0.8736815846536988 1.0269463984441696 1.0800117865906866 1.022608967873194 1.0881311519969405 1.036136005275942 1.0 20.014661684175504 4.187782403373501 0.6418799283710702 1.0574521569180146 0.7397990777323136 0.6918464486432405 0.05273065093635554 0.9714703889128625 0.47997561022820495 0.025058409379967533 0.20603367016646099 15409.282009296156 -4.187782403373501 -0.31765307918570107 TNLVWDEVSGQWR ddPTM_BT-474_Trastuzumab_2h_R1 4 TNLVWDEVSGQWR 13 0 Q15050 Q15050 RRS1 Ribosome biogenesis regulatory protein homolog 0 ;;; 185.3 1.3749000000000002e-06 298047000.0 552880.0 601560.0 527320.0 558520.0 562490.0 576280.0 549210.0 547410.0 688670.0 569930.0 False True 549903.3555107425 621582.5609493004 601562.0724523949 629228.5747336539 634119.7673605663 536443.1200172035 522642.6141140584 588260.5138916572 518956.50620521733 533556.5794583785 1.0306373807047002 1.1649796570408306 1.1274569476081615 1.1793099344260614 1.1884770833568785 1.0054099989953365 0.9795448772173346 1.1025269606623715 0.9726363167183096 1.0 19.02528174000558 2.7295416156287198 24.84119810140508 1.022554949427868 1.1413516420630323 0.5813780430639715 0.053113624099214836 462.77279672033364 1274619.8628815464 0.017212575210444326 0.01643412630654195 536.4652749718224 -2.7295416156287198 0.11879669263516424 TNNVSEHEDTDKYR ddPTM_BT-474_Trastuzumab_2h_R1 6 TNNVSEHEDTDKYR 14 1 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 ;;;;; 242.19 1.0794e-17 5566622000.0 5881600.0 5554070.0 5545470.0 5450650.0 5720830.0 7109540.0 6760260.0 6394630.0 8928130.0 6886430.0 False True 5849934.119107196 5738933.862443792 6326223.97391068 6140701.731132272 6449343.790484 6618074.233856996 6433240.39709892 6871829.761873194 6727911.9923127 6446932.141630659 0.9073981221752924 0.8901805907626958 0.9812766498749826 0.9524998241379146 1.000374076971862 1.0265462841032864 0.9978762387704805 1.0659069478176737 1.0435834974696927 1.0 22.620181367539093 3.79538019464898 0.6393449457944571 1.0388567856273867 0.8733075262638192 0.7759300646657593 0.02522154888765251 0.5484996226411638 0.3594902773167103 0.013449286218429755 0.057465050625571217 6242.811110790392 -3.79538019464898 -0.16554925936356746 TNPPTQKPPS(ph)PPMSGR ddPTM_BT-474_Trastuzumab_2h_R1 9 TNPPTQKPPSPPMSGR 16 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;Q8IZP0-12;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 1 TNPPTQKPPS(0.997)PPMS(0.003)GR;TNPPTQKPPS(0.751)PPMS(0.249)GR;TNPPTQKPPS(0.999)PPMS(0.001)GR;TNPPTQKPPS(0.978)PPMS(0.022)GR;TNPPTQKPPS(0.997)PPMS(0.003)GR;TNPPTQKPPS(0.987)PPMS(0.013)GR;TNPPTQKPPS(0.928)PPMS(0.072)GR;TNPPT(0.001)QKPPS(0.956)PPMS(0.042)GR;TNPPTQKPPS(0.973)PPMS(0.027)GR 166.27 4.0797e-09 29903600000.0 4327496.0 3098789.0 3089294.0 2933489.0 3028770.0 4686363.0 4398113.0 3919804.0 6016570.0 3996119.0 True False 4304197.242366006 3201930.318607493 3524239.742575186 3304868.4066225956 3414465.9065737394 4362405.756321892 4185359.4717667606 4212319.678841401 4533866.9414075315 3741083.2641703943 1.1505216372992129 0.8558832008026794 0.9420372372697525 0.8833987840565929 0.9126944431510577 1.1660809044540952 1.1187560330055597 1.1259625572048062 1.2119128662090715 1.0 21.83502464520193 2.739991896508015 24.99356861387826 1.131176532586558 0.9397180578952024 0.48718880126695185 0.08972143666856451 97.75526500188016 1707054.4864041035 0.02654596934195513 0.02678172473822564 549.5306200811973 -2.739991896508015 -0.19145847469135557 TNPS(ph)PTNPFSSDLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TNPSPTNPFSSDLQK 15 0 P49757-3;P49757;G3V3Z8;P49757-8;P49757-7;P49757-6;P49757-5;P49757-4;P49757-2;P49757-9 P49757-3 NUMB Protein numb homolog 1 TNPS(0.986)PT(0.014)NPFSSDLQK;TNPS(0.999)PT(0.001)NPFSSDLQK 208.43 1.73e-11 0.0 183632.0 158659.0 138697.0 123828.0 144626.0 190004.0 184831.0 178739.0 236840.0 217475.0 True False 182643.34571543304 163939.86890360905 158224.33202406456 139504.612103629 163043.26383453797 176869.47070130619 175890.01840701248 192077.41179825165 178473.95549340584 203595.5593102854 0.8970890442511047 0.8052232055501762 0.7771502117240494 0.6852045917711792 0.8008193517917324 0.8687295110977942 0.8639187367488261 0.9434263323274169 0.876610256618645 1.0 17.63534656909749 2.2315045434694216 1.328832946953286 0.9371616441756008 0.7882567188241554 0.5413814458070623 0.05728515830153852 0.35399892798280863 1.2142659304962293 0.03665652502748189 0.021070281947223112 170.41371474364126 -2.2315045434694216 -0.1489049253514454 TNQELQEINR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNQELQEINR 10 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28;H0YKS4;H0YNA0;H0YMM1;H0YN52;H0YLE2 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 130.98 0.00060998 166970000.0 456300.0 484700.0 432940.0 399950.0 415190.0 512800.0 505660.0 494550.0 697630.0 496900.0 False True 453843.3314996963 500832.94649266324 493894.1888180603 450583.62899220246 468061.9854760678 477351.34300135676 481199.29399121326 531455.8322740159 525708.4342630667 465187.41658250714 0.9756139468127707 1.0766261696673256 1.0617101220115692 0.968606658155994 1.006179378012154 1.026148442509928 1.034420271997762 1.1424553058170592 1.1301002897395127 1.0 18.827452546571358 1.8730226800373113 6.319456709166373 1.1042450269269448 1.0216447960579977 0.299248550414547 0.04778827509356731 0.24319496557278478 11.329289299374853 0.020509004668714814 0.012468395931783522 74.64877410093321 -1.8730226800373113 -0.08260023086894708 TNS(ph)DSALHQSTMTPTQPESFSSGSQDVHQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TNSDSALHQSTMTPTQPESFSSGSQDVHQK 30 0 M0QXN6;M0QX46;Q6UUV9;Q6UUV9-2;Q6UUV9-3 M0QXN6 CRTC1 CREB-regulated transcription coactivator 1 1 T(0.227)NS(0.767)DS(0.006)ALHQSTMTPTQPESFSSGSQDVHQK;T(0.163)NS(0.837)DS(0.001)ALHQSTMTPTQPESFSSGSQDVHQK 329.68 4.5047999999999985e-105 965860000.0 225627.0 296350.0 364880.0 396860.0 414680.0 560140.0 433370.0 497750.0 570350.0 462320.0 True False 224412.24930151645 306213.8306026422 416251.9324061853 447102.4353090278 467487.03999907494 521418.8402277305 412406.23746583157 534894.632523286 429794.88479844574 432814.3417879345 0.5184954093121791 0.7074946484852792 0.9617332241964749 1.0330120611578395 1.0801098643540998 1.204717103582509 0.952847901856029 1.2358523756714321 0.9930236669676529 1.0 18.723388779709488 4.3979488094062456 1.2751676544659312 1.095424786816408 0.42292796379212677 0.8241268564796136 0.08557725804792378 0.2782660776862268 0.602939735448006 0.023221617725507394 0.21024397738294368 25000.506616117993 -4.3979488094062456 -0.6724968230242812 TNS(ph)MGSATGPLPGTK ddPTM_BT-474_Trastuzumab_2h_R1 9 TNSMGSATGPLPGTK 15 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 T(0.051)NS(0.949)MGSATGPLPGTK;T(0.008)NS(0.992)MGSATGPLPGTK;T(0.001)NS(0.999)MGSATGPLPGTK;T(0.016)NS(0.984)MGSATGPLPGTK;T(0.021)NS(0.979)MGSATGPLPGTK;TNS(0.996)MGS(0.004)ATGPLPGTK;TNS(0.995)MGS(0.005)ATGPLPGTK;TNS(0.994)MGS(0.006)ATGPLPGTK;TNS(0.999)MGS(0.001)ATGPLPGTK 299.06 3.5580999999999997e-44 4971270000.0 6961970.0 5018080.0 4674560.0 4333520.0 4252690.0 6405610.0 6066100.0 5670070.0 8537810.0 5746000.0 True False 6924487.527067584 5185103.759306583 5332697.415996105 4882143.187674185 4794244.863831552 5962805.257884009 5772659.568247636 6093199.41543206 6433781.126292662 5379285.360601897 1.2872504548248749 0.9639019705633189 0.9913393803297732 0.9075821155410714 0.8912419666271647 1.108475356514052 1.0731275961909044 1.1327154086412479 1.19602896946385 1.0 22.358983092441132 2.5975239417902607 16.122799760011585 1.109723496657142 0.9992659414805444 0.14493529762514357 0.11210682399561239 2.6384942426234 341.4074760279927 0.036288285584357434 0.03421221149196785 395.8438863196972 -2.5975239417902607 -0.11045755517659772 TNS(ph)NASTVSGR ddPTM_BT-474_Trastuzumab_2h_R1 4 TNSNASTVSGR 11 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 TNS(0.998)NAS(0.002)TVSGR;TNS(1)NASTVSGR;T(0.012)NS(0.976)NAS(0.008)T(0.003)VSGR;TNS(1)NASTVSGR 173.66 1.2501e-05 434280000.0 353879.0 344074.0 312375.0 278678.0 340315.0 334140.0 335821.0 374749.0 426771.0 371540.0 True False 351973.75478365284 355526.2950928744 356354.6847878262 313958.6062265008 383652.098044963 311041.68828095455 319576.05526919925 402714.6733168639 321599.0054884153 347827.9991086025 1.011918982041914 1.0221324792828659 1.024514086563116 0.9026260307712415 1.102993718240535 0.8942399377798158 0.9187761079849637 1.1577983208623872 0.9245920578923903 1.0 18.408014544370793 TNS(ph)PGFQK ddPTM_BT-474_Trastuzumab_2h_R1 3 TNSPGFQK 8 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 TNS(1)PGFQK;T(0.001)NS(0.999)PGFQK;T(0.003)NS(0.997)PGFQK 119.94 0.0016767 919380000.0 1709560.0 1356800.0 1277900.0 1261400.0 1257890.0 1632450.0 1548000.0 1466340.0 2286350.0 1541230.0 True False 1700355.918909971 1401960.26779708 1457817.21229408 1421093.1106657453 1418074.835401844 1519602.5738739579 1473117.3260657333 1575765.7367236493 1722909.6780203842 1442867.38188661 1.1784561355089223 0.9716487359801271 1.0103611950724969 0.9849090280269598 0.9828171689262607 1.05318242892636 1.0209651590706625 1.092107117054146 1.1940873427796301 1.0 20.46050727297381 1.6610365616068328 4.387337064778808 1.1104589340294508 1.0234043042445857 0.14697805413165232 0.07084357668841848 0.24135398758171772 10.726885341700553 0.03737634659816521 0.017543281308656785 45.81804575675606 -1.6610365616068328 -0.08705462978486511 TNS(ph)SSSSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 5 TNSSSSSPVVLK 12 0 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 TNS(0.474)S(0.474)S(0.047)S(0.005)SPVVLK;TNS(0.972)S(0.026)S(0.002)SSPVVLK;T(0.167)NS(0.632)S(0.199)S(0.002)SSPVVLK;TNS(0.957)S(0.04)S(0.003)SSPVVLK;TNS(0.773)S(0.21)S(0.016)SS(0.001)PVVLK 225.65 1.8033e-11 4246130000.0 6358180.0 5284880.0 4554910.0 4105550.0 4074110.0 5982270.0 5802220.0 5406350.0 9598580.0 5994950.0 True False 6323948.265340211 5460784.036022573 5196201.736012546 4625312.2090484705 4592923.759358131 5568729.755648847 5521544.451967137 5809799.289889044 7233138.57338243 5612347.158465089 1.1267920687696262 0.9729946993364595 0.9258518030509086 0.8241315225969448 0.8183605948948892 0.9922283134694448 0.9838209034590822 1.0351817387358404 1.2887902991661349 1.0 22.420172820674274 1.56763943581875 3.030703126294604 1.1483525264712953 0.9401687288552868 0.34096069311783817 0.10618443251073091 0.2263217376044848 4.724524650069229 0.07325513684105767 0.028573100384210248 36.95212648608274 -1.56763943581875 -0.20818379761600847 TNS(ph)TGGSSGSSVGGGSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 TNSTGGSSGSSVGGGSGK 18 0 G8JLD3;X6RLX0;Q8IUD2-3;Q8IUD2;Q8IUD2-2;X6RM00;Q8IUD2-4;Q8IUD2-5;K7EKH8;K7EIZ7 G8JLD3 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 TNS(0.967)T(0.032)GGSSGSSVGGGSGK;TNS(0.912)T(0.088)GGSSGSSVGGGSGK;T(0.001)NS(0.971)T(0.028)GGSSGSSVGGGSGK;T(0.003)NS(0.957)T(0.04)GGSSGSSVGGGSGK 307.54 4.4026e-51 613876000.0 1360800.0 874530.0 809257.0 780925.0 868617.0 1023688.0 1081495.0 992833.0 1521790.0 1094230.0 True False 1353473.6039990946 903638.2023854514 923193.3514120595 879790.0249299561 979230.2262536812 952922.8580623495 1029178.9551378953 1066923.2399638197 1146765.2454412666 1024395.3045825646 1.3212415148179808 0.882118649258822 0.9012081051935861 0.8588384005610662 0.955910498489362 0.9302296230756937 1.004669731044189 1.0415151603985386 1.119455780704273 1.0 19.966341114651602 1.8320945090197744 2.5998154488356793 1.0625026092555212 0.961640584911014 0.06474133750979238 0.12593780123883078 0.6444003370822455 8.062019867688916 0.07156726615956645 0.03486470346883956 67.93514536399643 -1.8320945090197744 -0.1008620243445072 TNSAEVT(ph)PPVLSVMGEATPVSIEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNSAEVTPPVLSVMGEATPVSIEPR 25 0 A0A1C7CYX1;A0A0A0MSU2;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 T(0.041)NS(0.033)AEVT(0.897)PPVLS(0.028)VMGEATPVSIEPR;T(0.006)NS(0.004)AEVT(0.988)PPVLS(0.002)VMGEATPVSIEPR 172.83 1.9527000000000003e-11 77056000.0 60734.0 86512.0 89563.0 80527.0 82442.0 97325.0 96076.0 84999.0 93758.0 88743.0 True False 60407.01489218176 89391.49962239161 102172.69190444855 90721.70994338067 92940.50002798245 90597.15182840692 91428.43683403835 91342.05699617653 70652.59719283364 83079.34576329534 0.7271002718809292 1.0759774141346814 1.2298206126412312 1.0919887381137967 1.1186956177144547 1.0904894711921644 1.1004953878010877 1.0994556608139743 0.8504231291629661 1.0 16.34220223478153 -0.36272078418778664 6.323786256209346 0.9999986967310952 1.059991472172152 0.0 0.13871951841725172 0.0 0.0 0.12963292161930628 0.030554772647345234 0.4337896800205203 0.36272078418778664 0.059992775441056745 TNSGISSASGGSTEPT(ph)TPDSERPAQALLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 T(0.007)NS(0.001)GIS(0.001)S(0.005)AS(0.031)GGS(0.031)T(0.023)EPT(0.517)T(0.384)PDSERPAQALLR 128.6 2.767e-05 360290000.0 44275.0 56514.0 48361.0 59848.0 60814.0 54793.0 58194.0 52659.0 58867.0 51632.0 True False 44036.62831941495 58395.03432656561 55169.80843865248 67424.75066364634 68558.30242718174 51005.28887884819 55378.93389733158 56588.68197698392 44360.0166273869 48336.801555620856 0.9110372821987875 1.2080864361571548 1.141362412553692 1.3948947487984098 1.4183458611404425 1.055206121161259 1.1456888357333157 1.1707163104672467 0.9177275947052912 1.0 15.560834392733465 1.2821068616489433 6.349496051016318 0.9589157015655551 1.1894297435707153 0.2824080650017514 0.14087071090837533 0.21814689647342278 21.398009425036 0.10351980713760647 0.03594169366040817 19.147270010354486 -1.2821068616489433 0.23051404200516024 TNSGISSASGGSTEPTT(ph)PDSERPAQALLR ddPTM_BT-474_Trastuzumab_2h_R1 3 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 TNSGISSAS(0.008)GGS(0.001)T(0.005)EPT(0.217)T(0.769)PDSERPAQALLR;TNSGISSASGGSTEPT(0.199)T(0.8)PDSERPAQALLR;TNSGISSASGGSTEPT(0.212)T(0.788)PDSERPAQALLR 213.7 1.9007e-26 1619240000.0 306924.0 330514.0 305227.0 315126.0 310556.0 391710.0 355470.0 289464.0 340350.0 324760.0 True False 305271.55528646184 341514.95869006804 348200.3085193562 355020.9192894037 350103.4657903753 364632.00968615734 338274.5580727299 311065.2735484088 256475.30295634465 304033.5387589754 1.0040719735478523 1.123280543600837 1.145269400016405 1.1677031446548696 1.1515290951763126 1.1993150860083952 1.1126225068902655 1.0231281549336169 0.8435756923503993 1.0 18.213870954462077 1.5626804869686026 3.0622370729269357 0.9225545627663084 1.1348234540116733 0.6529884474027396 0.06049183968315102 0.1222856129266721 2.5943497313059973 0.04055810793655854 0.0157831954718984 36.53259202694142 -1.5626804869686026 0.21226889124536485 TNSMSSS(ph)GLGSPNRS(ph)SPSIICMPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 Q9NZN8;Q9NZN8-5;F8VP97;F8VV52;F8VUB4;Q9NZN8-4;F8VX63;F8VVY1;F8VQD8;A0A087X050 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 2 T(0.025)NS(0.025)MS(0.077)S(0.28)S(0.304)GLGS(0.299)PNRS(0.571)S(0.374)PS(0.047)IICMPK 51.479 0.072866 312240000.0 267700.0 210220.0 186440.0 191940.0 194220.0 301060.0 283510.0 242160.0 383370.0 286390.0 True False 266258.73294426635 217217.04561932635 212689.13143446963 216239.58431994834 218952.76576787 280248.4308190104 269795.5381866254 260231.20886356404 288893.6003948108 268112.3450091852 0.993086435222312 0.8101717420430035 0.7932836193245155 0.8065260266644575 0.8166455959361698 1.0452649273177237 1.0062779398590638 0.9706050978542179 1.0775095058935598 1.0 18.03247812297586 2.7408770202665877 24.953626680135542 1.0130501177791345 0.8371734195455632 0.6841283080947337 0.059611649560693425 117.61523256461399 1267023.175625249 0.01867332495830003 0.018965313069871228 550.6517455549138 -2.7408770202665877 -0.17587669823357122 TNSMSSSGLGS(ph)PNR ddPTM_BT-474_Trastuzumab_2h_R1 10 TNSMSSSGLGSPNR 14 0 Q9NZN8;Q9NZN8-5;F8VP97;F8VV52;F8VUB4;Q9NZN8-4;F8VX63;F8VVY1;F8VQD8;A0A087X050 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 1 TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR 289.13 2.0889e-43 7945829000.0 3525073.0 3402720.0 3309100.0 3307270.0 3095784.0 3880670.0 4064440.0 3583140.0 4739890.0 3895340.0 True False 3506094.398640431 3515977.478212323 3774992.516787188 3725970.04289797 3490013.7422506404 3612408.417014577 3867827.5095314058 3850532.101616253 3571807.6207719943 3646736.0662316424 0.9614335490595173 0.9641436655561314 1.0351702037729535 1.0217273680428987 0.9570239465827448 0.9905867469996155 1.060627212741565 1.0558845037543954 0.9794532853217767 1.0 21.798174357230227 2.284467556712427 15.423217689009615 1.032706604118662 0.9894647157972501 0.20174520650889172 0.03291328848646924 3.884430840013581 1303.8333857228386 0.01190893482783886 0.009961422842656333 192.51632234090243 -2.284467556712427 -0.04324188832141196 TNSMSSSGLGS(ph)PNRS(ph)SPSIICMPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 Q9NZN8;Q9NZN8-5;F8VP97;F8VV52;F8VUB4;Q9NZN8-4;F8VX63;F8VVY1;F8VQD8;A0A087X050 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 2 T(0.004)NS(0.004)MS(0.02)S(0.118)S(0.131)GLGS(0.723)PNRS(0.626)S(0.365)PS(0.009)IICMPK 94.261 0.004335 234560000.0 190810.0 166490.0 149490.0 149310.0 166990.0 241040.0 216980.0 219820.0 321910.0 256290.0 True False 189782.7001609841 172031.51900466965 170536.8926096268 168212.63069090078 188255.18667272455 224377.47214712747 206483.8484559065 236224.08462334276 242579.59387300367 239933.35277909192 0.7909809034999739 0.716997103620938 0.7107677637741392 0.7010806490324635 0.7846144960348728 0.935165826460622 0.8605883511577376 0.9845404229433483 1.0110290672941504 1.0 17.872274192903685 2.515768118182436 1.0061642652078624 0.9946703726638524 0.7219532290829207 0.8712678430581432 0.04259004622810888 0.17897972537830584 0.3678355462498755 0.02712543573296775 0.019915104970485313 327.9201607334631 -2.515768118182436 -0.2727171435809317 TNSMSSSGLGS(ph)PNRSS(ph)PSIICMPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TNSMSSSGLGSPNRSSPSIICMPK 24 1 Q9NZN8;Q9NZN8-5;F8VP97;F8VV52;F8VUB4;Q9NZN8-4;F8VX63;F8VVY1;F8VQD8;A0A087X050 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 2 TNSMSSSGLGS(1)PNRS(0.07)S(0.917)PS(0.014)IICMPK;TNSMSSSGLGS(1)PNRS(0.07)S(0.918)PS(0.013)IICMPK 205.45 5.5331e-25 913490000.0 1330180.0 1072010.0 977710.0 948250.0 1028830.0 1565700.0 1569690.0 1421340.0 2116700.0 1559360.0 True False 1323018.458676891 1107691.2048062703 1115363.0695923355 1068298.3527737362 1159845.4021468328 1457466.8442613578 1493758.0979018873 1527407.6082182769 1595067.647326851 1459840.3097647391 0.9062761521430397 0.7587755985343222 0.7640308752483222 0.7317912415679891 0.7945015591011786 0.9983741608671131 1.0232339029894402 1.0462840339464434 1.0926315958379753 1.0 20.477379132326202 2.6911259484213765 3.382390789466144 1.041027362224092 0.7822129080488681 0.8610689529395557 0.048587516889386964 0.08367346345983274 1.9524852892903555 0.016435838957083858 0.01589741883934091 491.05026349786476 -2.6911259484213765 -0.25881445417522386 TNSS(ph)DSERS(ph)PDLGHSTQIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNSSDSERSPDLGHSTQIPR 20 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 2 T(0.092)NS(0.405)S(0.503)DS(0.008)ERS(0.993)PDLGHSTQIPR;T(0.25)NS(0.343)S(0.403)DS(0.004)ERS(0.999)PDLGHSTQIPR 106.38 0.00013782 1575290000.0 686580.0 533380.0 413900.0 448300.0 482960.0 646840.0 669990.0 597000.0 962520.0 559440.0 True False 682883.5295662084 551133.2308649815 472173.5223167075 505054.73403476534 544462.0932718073 602125.473297577 637580.0240896523 641551.1715045747 725319.8431072156 523736.06023931975 1.3038696041936975 1.052311025926194 0.901548619930713 0.964330647395144 1.0395734313635323 1.1496735073434459 1.217368962141564 1.224951306983559 1.3848957483962108 1.0 18.99848041498391 2.5298332065007547 2.614380212706626 1.2253854941543745 1.0388400092807495 0.23061273596150889 0.13087130138425365 0.3629645991930274 4.946282183203804 0.04851006907018024 0.042585748978308635 338.71404591816184 -2.5298332065007547 -0.186545484873625 TNSS(ph)SSSPVVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSSSSSPVVLK 12 0 Q7Z589-4;E9PMC9;Q7Z589-6;Q7Z589-7;Q7Z589;Q7Z589-5;Q7Z589-2 Q7Z589-4;Q7Z589-7 EMSY;C11orf30 Protein EMSY 1 TNS(0.228)S(0.765)S(0.006)SS(0.001)PVVLK 243.92 2.3789e-16 1452200000.0 1951900.0 1606900.0 1393700.0 1200200.0 1144100.0 1729600.0 1819200.0 1639700.0 2843100.0 1620300.0 True False 1941391.1872764758 1660384.6951084381 1589920.8457424387 1352145.1969407205 1289794.3533880136 1610036.8230404584 1731198.3459811271 1762062.7402278914 2142456.100588165 1516891.0667913794 1.2798487839888364 1.0945971872723763 1.048144379349228 0.8913924187060187 0.8502880540500943 1.0614056989907037 1.1412805994322741 1.161627739001136 1.4123994448197386 1.0 20.532686053694395 2.0539504121142618 2.2625747805860486 1.207717397148603 1.0249411582714305 0.19100945539754943 0.14367779556502203 0.4786287097764821 4.683909426685455 0.07800086253103737 0.04430539895319168 113.2271072773715 -2.0539504121142618 -0.18277623887717254 TNST(ph)GGSSGSSVGGGSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNSTGGSSGSSVGGGSGK 18 0 G8JLD3;X6RLX0;Q8IUD2-3;Q8IUD2;Q8IUD2-2;X6RM00;Q8IUD2-4;Q8IUD2-5;K7EKH8;K7EIZ7 G8JLD3 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 T(0.019)NS(0.387)T(0.593)GGS(0.001)SGSSVGGGSGK 100.02 0.010372 80624000.0 132810.0 87099.0 79653.0 73555.0 85481.0 100730.0 101330.0 91128.0 157290.0 118550.0 True False 132094.96571657818 89998.03756254268 90867.45004371268 82867.055458236 96366.4986644181 93766.77219291471 96428.2807818092 97928.43409860792 118527.98707801795 110984.03750423864 1.1902158966917498 0.8109097450983032 0.8187434165047592 0.7466574231908908 0.8682915203975863 0.8448671926296935 0.8688481961032141 0.8823650346552574 1.067973284658086 1.0 16.759992667503255 1.27983996136182 7.151096549627244 1.0337849367179357 0.8685302157514917 0.228497170862076 0.11277266273806186 0.23844690210916056 32.26308789315637 0.07634782004468717 0.026935087194010252 19.047586801270025 -1.27983996136182 -0.165254720966444 TNT(ph)PQGVLPSSQLK ddPTM_BT-474_Trastuzumab_2h_R1 5 TNTPQGVLPSSQLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 T(0.004)NT(0.996)PQGVLPSSQLK;T(0.006)NT(0.994)PQGVLPSSQLK;TNT(1)PQGVLPSSQLK;TNT(1)PQGVLPSSQLK;T(0.06)NT(0.94)PQGVLPSSQLK 296.52 1.3413e-42 1427390000.0 2510670.0 1828950.0 1545023.0 1523250.0 1528413.0 2253408.0 2240420.0 2098350.0 3327190.0 2058102.0 True False 2497152.8316816585 1889825.4951263801 1762548.8088193422 1716093.2938176582 1723047.335936398 2097635.208911858 2132042.3253644668 2254939.5322053996 2507248.606561835 1926752.1683302284 1.2960425698369675 0.9808347571572478 0.9147771248373946 0.890666335829204 0.8942755400813348 1.0886896838059463 1.1065472562629308 1.170331903225305 1.3012823588695785 1.0 20.87773958386652 2.350493085819617 2.4198006208993363 1.164501754197519 0.9852426141300745 0.21846027803226498 0.1299287020413906 0.394516337062326 4.736720186908878 0.05408132297570844 0.04133351262578889 224.12643634743617 -2.350493085819617 -0.17925914006744437 TNT(ph)PVKEDWNVR ddPTM_BT-474_Trastuzumab_2h_R1 4 TNTPVKEDWNVR 12 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 1 T(0.032)NT(0.968)PVKEDWNVR;T(0.016)NT(0.984)PVKEDWNVR;T(0.004)NT(0.996)PVKEDWNVR;T(0.001)NT(0.999)PVKEDWNVR 127.3 0.00044014 1992960000.0 3245570.0 1824490.0 1581600.0 1398520.0 1337070.0 2731200.0 2563170.0 2191450.0 4024590.0 2808070.0 True False 3228096.2117367224 1885217.0467225055 1804275.5324863591 1575572.4886065142 1507337.9390652138 2542398.5725532495 2439179.674839734 2354987.1269576205 3032783.721243055 2628856.568490321 1.2279468763830383 0.7171243457398413 0.6863347183382106 0.5993375627607259 0.573381582370177 0.9671119387138258 0.927848139025891 0.8958218394965626 1.153651270896342 1.0 21.326003999384866 2.6705607637602014 13.339464759555439 0.9703243281765643 0.7453010272511632 0.2781020018021394 0.1816408139971844 2.595455576763297 507.3430007049133 0.05990819304138278 0.05647926241414529 468.3394739117098 -2.6705607637602014 -0.22502330092540113 TNTMNGS(ph)KSPVISR ddPTM_BT-474_Trastuzumab_2h_R1 1 TNTMNGSKSPVISR 14 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 1 TNTMNGS(0.913)KS(0.087)PVISR 270.61 1.6207999999999998e-32 566530000.0 646730.0 494680.0 485490.0 476330.0 466200.0 713020.0 697690.0 559280.0 925950.0 640910.0 True False 643248.077538458 511145.12475962477 553842.772045272 536633.3291607851 525567.8066161103 663730.6056685401 663940.0692653757 601016.3135662953 697762.0295943206 600006.5750893424 1.072068380988453 0.8518992057437271 0.9230611713926694 0.8943790808973703 0.875936745422918 1.1062055537803215 1.1065546559494177 1.0016828790197883 1.1629239721088425 1.0 19.194618784819323 2.7368192471883033 24.998993280290662 1.0720078010431877 0.9178540652860855 0.5290465309006699 0.07157289691018 119.28028762180256 1712369.218813314 0.021636947002394716 0.02138766686904119 545.5307646246534 -2.7368192471883033 -0.15415373575710223 TNTMNGSKS(ph)PVISR ddPTM_BT-474_Trastuzumab_2h_R1 9 TNTMNGSKSPVISR 14 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6;Q8N8S7 ENAH Protein enabled homolog 1 TNTMNGS(0.35)KS(0.65)PVISR;TNTMNGS(0.06)KS(0.94)PVISR;TNTMNGS(0.039)KS(0.961)PVISR;TNTMNGS(0.004)KS(0.996)PVISR;TNTMNGS(0.008)KS(0.992)PVISR;TNT(0.001)MNGS(0.048)KS(0.945)PVIS(0.005)R;TNTMNGS(0.001)KS(0.999)PVISR;TNTMNGS(0.003)KS(0.997)PVISR;TNTMNGS(0.003)KS(0.993)PVIS(0.003)R 201.22 1.0986e-08 21344939000.0 7162380.0 6004370.0 5929600.0 5559970.0 5413410.0 8039310.0 7729910.0 6691660.0 9948630.0 7550410.0 True False 7123818.541895232 6204221.825731686 6764436.138992868 6263861.6319234315 6102775.675705106 7483571.422200156 7355984.722176215 7191025.648760976 7496923.441312118 7068536.369568772 1.0078208796610935 0.8777236900756281 0.9569783312023257 0.8861610529289204 0.8633719000129324 1.0587158403001475 1.0406658942641869 1.0173288036996657 1.06060477719088 1.0 22.75298008690995 2.7296671129093064 24.98925386845406 1.0353481591773002 0.9165017013783266 0.6552621745873712 0.04243940719270869 382.29516942264985 1074183.1085721499 0.013102701373015713 0.012527535190110831 536.6203187595338 -2.7296671129093064 -0.11884645779897351 TNTMNGSKS(ph)PVISRPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TNTMNGSKSPVISRPK 16 2 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2 A0A0U1RRM6 ENAH Protein enabled homolog 1 TNTMNGSKS(1)PVISRPK 183.24 1.0519e-09 831550000.0 830490.0 648250.0 594770.0 620170.0 572570.0 866920.0 805930.0 815480.0 1333600.0 813210.0 True False 826018.7341161136 669826.6093746002 678508.4461664852 698683.4584125376 645483.3956117262 806991.8609101721 766944.0869484213 876335.2585235344 1004952.1493244624 761310.2415758912 1.0849962196834206 0.8798339662265382 0.8912377754987132 0.9177381575299475 0.8478585474899082 1.0600039469319646 1.0074001964834576 1.1510882300880974 1.3200297256532885 1.0 19.538124960719035 2.064990557852197 1.5339979916628552 1.1733868160524894 0.9254346156644577 0.47086705517743555 0.10019954868705636 0.30947599861869884 1.3726742632931292 0.061111463819575274 0.031129712402768142 116.14233626554416 -2.064990557852197 -0.24795220038803167 TNTNVNCPIECFMPLDVQADREDS(ph)RE ddPTM_BT-474_Trastuzumab_2h_R1 3 TNTNVNCPIECFMPLDVQADREDSRE 26 2 H0Y7Z1;P02751-12;P02751-10;P02751-6;P02751-5;P02751-9;P02751-14;P02751-13;P02751-8;P02751-17;P02751-3;P02751-11;P02751-1;P02751-7;P02751 H0Y7Z1 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 1 TNTNVNCPIECFMPLDVQADREDS(1)RE;TNTNVNCPIECFMPLDVQADREDS(1)RE;TNTNVNCPIECFMPLDVQADREDS(1)RE 108.04 0.0021135000000000004 239372000.0 106764.0 125562.0 120429.0 134998.0 129285.0 135753.0 133301.0 103280.0 165059.0 150163.0 True False 106189.19448659547 129741.25526616814 137384.35641236702 152088.7329583433 145748.67841776885 126368.71463818893 126852.72137072902 110987.27804521345 124382.42112728448 140579.4687789876 0.755367731923508 0.922903297281207 0.977271842080697 1.0818701641094548 1.036770729635549 0.8989130186347472 0.9023559590352478 0.7894984880025575 0.8847836900197188 1.0 17.101026382832956 2.5196280203201273 8.02990400436419 0.872075151394048 0.962129583585324 0.07039247711021446 0.09417696025226817 0.5795840781481841 100.6196009504027 0.03241960943469484 0.030208873250827627 330.8476241816795 -2.5196280203201273 0.09005443219127596 TNTPADVFIVFTDNETFAGGVHPAIALR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNTPADVFIVFTDNETFAGGVHPAIALR 28 0 P10155-3;P10155-5;P10155-4;P10155;G5E9R9 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 ; 172.18 2.7369e-12 124141000.0 65296.0 135673.0 126912.0 130639.0 128927.0 97708.0 111658.0 98716.0 101924.0 119801.0 False True 64944.453591067606 140188.79378893945 144780.10646112077 147177.88400528158 145345.08923980108 90953.67593989203 106256.6759650179 106082.68918969102 76806.19591162767 112155.19761320377 0.5790587950729253 1.2499536068976205 1.2908907437391572 1.3122698469389054 1.2959282523941622 0.8109626470773947 0.9474075051917928 0.9458562014713277 0.6848206551827738 1.0 16.77513695528933 2.7320949879956316 24.952353087969204 0.8862718163915607 1.1687454418228747 0.27170592748722777 0.2173695816287359 666.5125827838616 2572220.8450528015 0.06972347337306067 0.06720356716289697 539.6286360739493 -2.7320949879956316 0.28247362543131393 TNTPVKEDWNVR ddPTM_BT-474_Trastuzumab_2h_R1 4 TNTPVKEDWNVR 12 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 0 ;;; 155.66 5.4323e-05 4140370000.0 3882540.0 4059380.0 3794150.0 3885510.0 3880590.0 4709300.0 4940540.0 4177490.0 5321490.0 4433890.0 False True 3861636.8360307445 4194494.009352968 4328333.340657005 4377415.167609686 4374760.134441038 4383757.175499784 4701547.205504395 4489235.516664397 4010080.093812716 4150915.3441557847 0.9303097066211371 1.0104985675649925 1.042741897097712 1.0545662353179035 1.0539266093683197 1.0560940929985057 1.1326531176126884 1.0815049560056542 0.9660712785816373 1.0 21.984998078521286 4.976244084614203 1.1446749428001786 1.0601766924197245 0.8076926028993646 0.40029945412184165 0.042721902947362396 2.333428669305467 1.7912142009247156 0.012408618845046836 0.8013680134523999 94676.91203418399 -4.976244084614203 -0.25248408952035983 TNVLGHLQQGGAPTPFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TNVLGHLQQGGAPTPFDR 18 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ; 206.21 8.773199999999999e-16 2594200000.0 1190580.0 1220640.0 1276940.0 1303830.0 1182260.0 1446760.0 1507810.0 1164770.0 1612170.0 1402860.0 False True 1184170.0495658726 1261268.2645075396 1456722.052638549 1468894.7443152983 1332813.8031959743 1346748.8865067144 1434871.4699064437 1251691.0519822163 1214872.3054712196 1313328.273751127 0.9016557956097657 0.9603602463419951 1.109183500997706 1.1184520836666696 1.0148367547050463 1.0254472651077033 1.0925459373597166 0.9530679244475088 0.9250332378829418 1.0 20.324796140329173 -0.8809775053192691 7.432398455767931 1.0000003776312318 1.0153199112842417 0.0 0.07313026973499617 0.0 8.245715946705308e-18 0.07387243389955386 0.01741189965104318 0.13152929572321392 0.8809775053192691 0.015319533653009865 TNYNDRYDEIR ddPTM_BT-474_Trastuzumab_2h_R1 6 TNYNDRYDEIR 11 1 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 ;;;;; 218.94 9.3447e-12 18013200000.0 9606400.0 10628000.0 10429100.0 10284800.0 9207300.0 10646100.0 11147200.0 9666000.0 12404300.0 10991400.0 False True 9554680.209771372 10981746.555238342 11897426.62863777 11586854.625475692 10379795.079057314 9910160.165223764 10607967.349560678 10387326.002953472 9347426.474104244 10289919.441789031 0.928547620204709 1.0672334819881766 1.1562215521649657 1.126039391369732 1.0087343382790037 0.9630940476537646 1.0309086878250964 1.0094662122201712 0.9084061859748707 1.0 23.294728351848043 3.0748192711012483 7.22425510774523 0.9888763635870208 1.0752254677541633 0.2930281877241778 0.0633929457704535 0.3010257909163166 24.35967855472656 0.019129543936620332 0.022905745935761442 1188.0077426559928 -3.0748192711012483 0.08634910416714248 TNYNDRYDEIRR ddPTM_BT-474_Trastuzumab_2h_R1 6 TNYNDRYDEIRR 12 2 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 ;;;;; 161.21 3.6116e-05 6268350000.0 1901430.0 2519590.0 2408190.0 2713930.0 2209340.0 2167810.0 2684730.0 2192750.0 3464520.0 2901700.0 False True 1891192.9121487346 2603453.030025679 2747242.219637285 3057513.2597344914 2490686.3532158667 2017954.3971758424 2554859.3532354385 2356384.1395588857 2610735.4681895543 2716511.0217296467 0.6961845164701674 0.9583811768847594 1.011312745526087 1.1255294881107174 0.916869592389876 0.742847859270226 0.9404929090288461 0.8674303622219569 0.9610619825599885 1.0 21.37332346980753 3.0080679122464495 24.994800068796867 0.8887265887557787 0.96164478069535 0.020278892790053127 0.11909364936463851 543.6874722841118 1684355.992402955 0.034854340326658476 0.04159106313852504 1018.7506814393761 -3.0080679122464495 0.07291819193957128 TPAAAAAMNLAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 7 TPAAAAAMNLASPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR 208.59 8.214799999999999e-09 5252810000.0 913615.0 1063535.0 919928.0 929114.0 904601.0 954452.0 897886.0 864089.0 1144487.0 940924.0 True False 908696.1983521701 1098934.1195545169 1049445.866242482 1046739.737135796 1019796.5753598022 888472.9797783365 854451.8239223894 928571.7089350354 862443.5141900927 880873.4247544347 1.0315854387427927 1.2475505432132568 1.1913696528363777 1.18829755526749 1.1577106843064267 1.0086272951485855 0.970005224258626 1.054148851401548 0.9790776857986381 1.0 19.748575203459584 2.7551758487340394 5.027993693321755 1.0063461277498968 1.1721284310102273 0.6786932036941118 0.0552351879961923 0.10548007722278517 8.04410572391367 0.016829960931829736 0.017161586007247907 569.0833098296958 -2.7551758487340394 0.1657823032603305 TPAAEHAFEHWQEDAFFASQFLNGLNPVLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPAAEHAFEHWQEDAFFASQFLNGLNPVLIR 31 0 O15296-4;O15296;I3L1D5;O15296-3;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 ; 284.26 2.2806999999999997e-72 545540000.0 295360.0 350460.0 332210.0 340950.0 298940.0 431150.0 371130.0 125510.0 348860.0 297000.0 False True 293769.8145775811 362124.84924245655 378982.2803789158 384114.23504160874 337008.23704380105 401345.6153179308 353177.02404572105 134876.19352686635 262888.12748450227 278045.20572550705 1.0565541448954088 1.3023955881474718 1.363023970832485 1.3814812380574388 1.2120627513229043 1.44345454283484 1.2702143995763981 0.48508728346864355 0.945487000211152 1.0 18.084959935709374 1.7615853005331472 24.99999999999866 0.7654447287487266 1.2996148358789346 0.6425883043450717 0.1628067423084107 6.310251127239668 6856.828095857907 0.07067331146405577 0.039193405260575326 57.75442980528129 -1.7615853005331472 0.534170107130208 TPAAPAS(ph)PAAVPSEGSGGSTTGWR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPAAPASPAAVPSEGSGGSTTGWR 24 0 P07199 P07199 CENPB Major centromere autoantigen B 1 TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR 375.45 6.094699999999998e-119 4774950000.0 1233132.0 1477006.0 1419526.0 1498487.0 1540552.0 1551813.0 1445437.0 1267454.0 1668363.0 1398094.0 True False 1226492.9543258438 1526167.251841018 1619382.92205882 1688195.3005566658 1736732.1656329099 1444539.819884878 1375515.6902044418 1362037.853481002 1257217.293568844 1308866.4439515066 0.9370650152990593 1.1660221399163337 1.2372407662693643 1.289814792302226 1.326897922747308 1.103657158115972 1.0509213499673191 1.0406240146007328 0.9605390216692146 1.0 20.319886462268883 2.389988049551751 3.2207763017159023 1.0187612488915272 1.1991732830317003 0.4040465603987966 0.10106133841060137 0.2651599219651728 5.539099970496966 0.039897821750456065 0.032604957050253576 245.4641370575694 -2.389988049551751 0.18041203414017315 TPADTGFAFPDWAYKPES(ph)SPGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 TPADTGFAFPDWAYKPES(0.499)S(0.499)PGS(0.002)R 143.9 9.4641e-08 65806000.0 49015.0 46477.0 44216.0 39973.0 38500.0 50541.0 55705.0 41608.0 53293.0 55865.0 True False 48751.10868607843 48023.95884906019 50441.22846763838 45033.57770147595 43402.74679262175 47047.21963071679 53010.33633623495 44713.00024114295 40159.65423961351 52299.64787156721 0.9321498455553091 0.9182463133784977 0.9644659289390901 0.8610684686073867 0.8298860233094939 0.89957048556524 1.0135887810643196 0.8549388391857844 0.7678761879665804 1.0 15.674513612529239 3.737126472758328 24.9708804348738 0.887229736260374 0.9362832571448431 0.0911179926725707 0.07016651662055087 322.3313259071069 5612374.256345835 0.018647344049349264 0.03066424987330566 5459.168167221588 -3.737126472758328 0.049053520884469015 TPADTGFAFPDWAYKPESS(ph)PGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 TPADTGFAFPDWAYKPES(0.048)S(0.952)PGSR;TPADTGFAFPDWAYKPES(0.02)S(0.976)PGS(0.004)R;TPADTGFAFPDWAYKPES(0.233)S(0.756)PGS(0.011)R;TPADTGFAFPDWAYKPES(0.168)S(0.809)PGS(0.023)R;TPADTGFAFPDWAYKPES(0.121)S(0.877)PGS(0.002)R 255.95 8.8218e-44 3041417000.0 2722760.0 2690050.0 2493010.0 2220070.0 2480450.0 3110790.0 2781800.0 2449240.0 3081070.0 2697090.0 True False 2708100.962687072 2779586.6880804384 2844004.138368627 2501130.634371096 2796320.604721001 2895748.4093119944 2647233.70649203 2632014.7257887144 2321781.582722795 2524959.407105076 1.0725324752020358 1.1008441087246223 1.1263563803702266 0.9905627105659887 1.1074715089883551 1.1468494903971689 1.048426243623118 1.0423988276335814 0.9195322412667105 1.0 21.26782876366823 1.5080464135268714 2.5594986548697647 0.96160739584598 1.0870861936603764 0.5345080941718563 0.045471417589232 0.1933585058609227 2.5959474001502274 0.03449408820668065 0.011972844034002318 32.21413048827773 -1.5080464135268714 0.12547879781439641 TPAEGRDS(ph)PTREPGALPCACGQLPDLEDELSLLDPLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPAEGRDSPTREPGALPCACGQLPDLEDELSLLDPLPR 38 2 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 T(0.019)PAEGRDS(0.545)PT(0.436)REPGALPCACGQLPDLEDELSLLDPLPR 85.936 0.00035915 194890000.0 11416.0 17383.0 14254.0 16421.0 14836.0 14922.0 15577.0 16023.0 19988.0 15215.0 True False 11354.537524436833 17961.582646754596 16260.839302010976 18499.89691631693 16725.27666013861 13890.477262609687 14823.481000081356 17218.717623145385 15062.22522547792 14243.96567378315 0.7971472119829327 1.2609959233343238 1.141594951463552 1.2987883669480522 1.174200854114838 0.9751832867847977 1.0406849707146402 1.2088429597129289 1.0574460491154387 1.0 13.798063243648482 TPAGNFVTLEEGKGDLEEYGQDLLHTVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPAGNFVTLEEGKGDLEEYGQDLLHTVFK 29 1 P43490 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 133.4 5.7051e-06 1151900000.0 456410.0 490740.0 507860.0 444580.0 467600.0 531790.0 590530.0 503260.0 589080.0 546530.0 False True 453952.7392719176 507073.98424140504 579362.2736017471 500863.782416185 527146.088317661 495028.6089990085 561963.8078563289 540815.8167024988 443909.1272675871 511649.9874921266 0.8872329724798501 0.9910563796294591 1.132341029541533 0.9789187817069818 1.0302865263448733 0.9675141622213489 1.0983364049529594 1.057003478790901 0.867603123462244 1.0 18.964797694840943 4.6835715775447 4.109319430638888 1.0239231133798836 0.8820437106467576 0.22544878446352057 0.06994626065347354 0.2658091195854959 8.457344099717858 0.016239900332106674 0.09619523671764042 48258.25095638767 -4.6835715775447 -0.14187940273312605 TPALAALAALGAPGPAPTAAS(ph)SP ddPTM_BT-474_Trastuzumab_2h_R1 2 TPALAALAALGAPGPAPTAASSP 23 0 Q86V15 Q86V15 CASZ1 Zinc finger protein castor homolog 1 1 TPALAALAALGAPGPAPTAAS(0.5)S(0.5)P;TPALAALAALGAPGPAPTAAS(0.5)S(0.5)P 210.14 7.501000000000001e-25 425210000.0 214200.0 424830.0 453940.0 407750.0 419950.0 463000.0 414290.0 428160.0 566350.0 389240.0 True False 213046.7709998572 438970.2097348418 517850.806282788 459371.1081924503 473428.14326133794 430993.89978476684 394249.20995850995 460111.47335242626 426780.6312011914 364398.36995486985 0.5846534687469724 1.2046437249134994 1.4211117529063673 1.2606288778112336 1.2992048875519702 1.1827547412963035 1.0819181491051595 1.2626606244408018 1.1711924816075536 1.0 18.475156980055136 4.737117566451721 6.410434296545169 1.2242449080130964 0.571513164017718 0.7408268352647883 0.11058602611839984 0.055302628307117144 13.366861510751876 0.025791918757901825 0.157961108939382 54590.56214320967 -4.737117566451721 -0.6527317439953784 TPALIVYGDQDPMGQTSFEHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPALIVYGDQDPMGQTSFEHLK 22 0 F8W9U3;Q96IU4;Q96IU4-2 F8W9U3 ABHD14B Alpha/beta hydrolase domain-containing protein 14B 0 99.999 0.00092236 220120000.0 104940.0 103340.0 80026.0 94790.0 107070.0 128730.0 114310.0 86028.0 127040.0 130010.0 False True 104375.01469993005 106779.6094296507 91292.96520153861 106790.40428096241 120704.72984639 119831.1980978251 108780.38859339402 92447.84620133249 95732.69424878497 121712.65049283899 0.857552721736768 0.8773090471473475 0.750069650376317 0.8773977384318441 0.991718850568386 0.9845418501084684 0.8937475944605623 0.7595582367731915 0.7865467875454527 1.0 16.89311960021056 4.7625887910608755 19.644115305931408 0.8707621825880415 0.8575524334541543 0.0 0.08883647955691555 5934.583075872458 4850293.246728653 0.022864958331901334 0.841670583805831 57888.032774011575 -4.7625887910608755 -0.013209749133887172 TPALVFEHVNNTDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPALVFEHVNNTDFK 15 0 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YF43;A0A2R8Y4H0;A0A2R8Y4D6;V9GYA2;A0A2R8YEW1;A0A2R8YDY7 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ; 201.72 6.268699999999999e-09 3813400000.0 4954200.0 4810400.0 4155500.0 4301300.0 4309800.0 5401300.0 5480900.0 5205100.0 7649700.0 5387100.0 False True 4927527.137663364 4970511.256051792 4740558.279746495 4845844.138977772 4858627.483814051 5027920.844292572 5215767.927928737 5593530.992962245 5764533.935728356 5043290.665871656 0.9770460328626958 0.9855690630103143 0.9399732424359805 0.9608496634489025 0.9633843864468818 0.9969524220201916 1.034199349885631 1.1091034333622904 1.1430104504460572 1.0 22.265933945546863 2.126317189273552 2.0947614471419422 1.0944403814951658 0.9660766643363379 0.6632928970930645 0.036484897517579384 0.16671718012786524 1.43165567227713 0.01788856657433923 0.01063839415657218 133.75720627258968 -2.126317189273552 -0.12836371715882788 TPAPSYPHAASAGTPAS(ph)PPPLHRPEAYPPSSHNGGLGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPAPSYPHAASAGTPASPPPLHRPEAYPPSSHNGGLGAR 39 1 A0A087WWH3;Q9NZM4-2;Q9NZM4 A0A087WWH3 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein 1 TPAPSYPHAASAGTPAS(1)PPPLHRPEAYPPSSHNGGLGAR;TPAPSYPHAASAGT(0.007)PAS(0.993)PPPLHRPEAYPPSSHNGGLGAR 212.84 6.2395e-32 1125370000.0 94279.0 125702.0 137347.0 150560.0 156927.0 157549.0 157200.0 130780.0 144064.0 161590.0 True False 93771.4123393816 129885.91508153647 156684.2637584751 169620.88056273528 176910.72327079868 146658.00846045406 149595.63543768306 140539.4676873841 108561.35755869768 151277.18785584092 0.6198648564827947 0.8585955154409057 1.035742837233244 1.1212588161301287 1.1694474611689976 0.9694654596581429 0.9888842961586496 0.9290195678499175 0.7176320441793964 1.0 17.206834924327463 4.617716136574078 2.6957234292192784 0.9946714579607562 0.593206951963861 0.4955714430323107 0.11456472485130818 0.3098783376241317 3.473281664753298 0.030545974145765466 0.24206356327776918 41468.29091191731 -4.617716136574078 -0.4014645059968952 TPAQSGAWDPNNPNT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPAQSGAWDPNNPNTPSR 18 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 1 TPAQSGAWDPNNPNT(0.99)PS(0.01)R 258.89 1.2538e-29 194040000.0 113300.0 138350.0 111520.0 117660.0 115930.0 113650.0 110690.0 105060.0 112930.0 114990.0 True False 112690.00538881337 142954.896115659 127221.04665078332 132555.74393604827 130692.99832905561 105793.64300332345 105335.50182313689 112900.11068387027 85099.91468447178 107651.23975210794 1.046806387444384 1.327944726366793 1.1817889598274893 1.231344332320638 1.2140408102127453 0.9827443069577086 0.9784885159306704 1.0487581094639418 0.7905149525489363 1.0 16.71600540865556 2.7278677471139923 6.672396495241634 0.971109079240752 1.2084978912112212 0.6382326954393363 0.0901708571036626 0.09588166663110567 23.149363745558908 0.027388454297765766 0.02689695783436399 534.4015967583198 -2.7278677471139923 0.23738881197046924 TPASPVVHIR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPASPVVHIR 10 0 A0A3B3ITJ4;M0R1W6;M0QYL7;P14866;M0QXS5 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;; 197.27 3.182e-07 1327320000.0 1037380.0 1177430.0 1091330.0 1061230.0 1119540.0 1187900.0 1081050.0 1090160.0 1165160.0 1143350.0 False True 1031794.8613437535 1216620.0457785332 1244979.7779895922 1195581.6091896365 1262106.7829665379 1105783.2690158186 1028755.4814879601 1171513.274920313 878021.9303440999 1070380.4241288179 0.9639515429138485 1.1366239687807629 1.163118971465571 1.116968866618352 1.1791198292829075 1.033075011546306 0.9611120105501404 1.0944830907887793 0.820289600362153 1.0 20.0296922056343 2.5248814854130837 5.847320509039138 0.9895456398622005 1.1161212253598083 0.38382987144063196 0.08388340588657459 0.2363760883792003 19.65294193808219 0.02726396887919886 0.02516792994970207 334.8740429366736 -2.5248814854130837 0.12657558549760783 TPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_BT-474_Trastuzumab_2h_R1 4 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 TPASTPVS(0.001)GT(0.999)PQAS(1)PMIER;TPASTPVS(0.001)GT(0.999)PQAS(1)PMIER;TPASTPVS(0.001)GT(0.999)PQAS(1)PMIER;TPASTPVS(0.004)GT(0.996)PQAS(1)PMIER 300.3 3.6206999999999996e-49 2412430000.0 1457500.0 1396200.0 1388930.0 1494760.0 1378280.0 1623140.0 1402240.0 1287650.0 1583350.0 1447270.0 True False 1449652.9819434748 1442671.672979278 1584479.2712040204 1683996.4627388048 1553795.7882944066 1510936.1522605754 1334408.2941230072 1383740.981554214 1193154.6083030056 1354903.989529816 1.0699304106754746 1.0647777880408482 1.1694402580908132 1.242889884266406 1.1467940166252009 1.1151610475255198 0.9848729536814478 1.0212834210004835 0.880619304041653 1.0 20.36975919305333 2.2602932986886253 2.756372333137108 0.9738574720380648 1.1423327730654307 0.6536412303588264 0.058298369217786486 0.1845089105888833 2.8851578646899623 0.026020932728072 0.01906343328676238 182.09301998969886 -2.2602932986886253 0.16847530102736585 TPASTPVSGT(ph)PQASPMIER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 TPASTPVS(0.15)GT(0.84)PQAS(0.01)PMIER;TPASTPVS(0.298)GT(0.7)PQAS(0.002)PMIER 228.85 3.228e-26 266480000.0 279479.0 337160.0 332840.0 316540.0 341630.0 353130.0 371610.0 332430.0 381840.0 342170.0 True False 277974.3161170357 348382.1667824759 379700.97890285816 356613.931544423 385134.5555003471 328718.9542786059 353633.8046119428 357237.6146453362 287740.6483938606 320332.4176535249 0.8677682956761991 1.0875645035691952 1.185334227750708 1.1132620736816607 1.2022965340863907 1.026180730275485 1.1039588412635684 1.1152090608317025 0.8982564128276399 1.0 18.2892102807336 1.246028684333245 24.98489306287863 0.9491281930908274 1.095253533836287 0.26928249967890494 0.09062375759203756 184.08145729563915 615870.8471144834 0.06206898588496831 0.021677013466247685 17.620924254569555 -1.246028684333245 0.14612534074545958 TPASTPVSGTPQAS(ph)PMIER ddPTM_BT-474_Trastuzumab_2h_R1 5 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 TPASTPVSGT(0.001)PQAS(0.999)PMIER;TPASTPVSGTPQAS(1)PMIER;TPASTPVSGTPQAS(1)PMIER;TPASTPVSGTPQAS(1)PMIER;TPASTPVSGTPQAS(1)PMIER 372.59 4.809899999999999e-108 5210150000.0 1021040.0 1341700.0 1274240.0 1206080.0 1300440.0 1458120.0 1484420.0 1126080.0 1229420.0 1197570.0 True False 1015542.8340882078 1386357.6734252237 1453641.9161073717 1358769.6043378308 1466043.3256882338 1357323.5964452783 1412612.933564919 1210113.8077183787 926445.9143839835 1121140.0573087404 0.9058126390791751 1.236560645913526 1.2965747737145268 1.2119534892005484 1.3076362013212 1.2106637235881916 1.2599790047247528 1.0793600673079302 0.82634271101497 1.0 20.096535085971674 1.4812031652122772 3.89271240301567 0.9166411052199919 1.2122871555271275 0.5072191808862114 0.11375272370497165 0.15172116762586155 4.663363688787926 0.07542926565063014 0.028727069096690143 30.2832976516933 -1.4812031652122772 0.29564605030713564 TPAVEGLTEAEEEELRAELTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPAVEGLTEAEEEELRAELTK 21 1 O43399;O43399-7;O43399-2;O43399-3;O43399-5;O43399-4;O43399-6;A0A087WZ51;A0A087WYR3 O43399 TPD52L2 Tumor protein D54 0 ; 189.82 1.8446e-17 130788000.0 120790.0 107089.0 89510.0 81842.0 69254.0 109413.0 108300.0 109918.0 142132.0 115700.0 False True 120139.6800610305 110653.39262833238 102112.22996513279 92203.18880855062 78073.08639938246 101849.53684049817 103061.1152538236 118120.63931229454 107105.47307122414 108315.92694424644 1.1091598756558683 1.0215800736791838 0.9427259023291479 0.8512431311787643 0.7207904562324347 0.940300653041757 0.9514862510189508 1.0905195814194055 0.9888247840629628 1.0 16.724885869128737 1.9257481808508736 6.111675520186151 1.0340874923207772 0.9241795617831402 0.15504182263757493 0.09869810449062293 0.4207674642754856 27.187789533638025 0.04763088296888863 0.02916980167103181 84.28459044798838 -1.9257481808508736 -0.10990793053763703 TPAVEGLTEAEEEELRAELTKVEEEIVTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPAVEGLTEAEEEELRAELTKVEEEIVTLR 30 2 O43399;O43399-7;O43399-2;O43399-3;O43399-5;O43399-4;O43399-6;A0A087WZ51;A0A087WYR3 O43399 TPD52L2 Tumor protein D54 0 ; 126.99 7.0985e-06 310710000.0 71587.0 72165.0 67301.0 75449.0 69431.0 72427.0 85888.0 86038.0 84275.0 69258.0 False True 71201.58354606347 74566.96840033623 76776.39580922142 85000.83566403965 78272.62630022124 67420.29196481916 81733.26931597794 92458.59245211148 63506.555477143906 64837.89514524297 1.0981476709964944 1.1500522685583674 1.184128442745328 1.3109746310183235 1.2072049242943992 1.0398285109933223 1.260578696037059 1.4259962055368325 0.9794666426922599 1.0 15.984549636462749 4.400506798744024 2.485991842454538 1.2084504416382447 1.102665574310315 0.0 0.13612260274941854 0.999607464863074 11.328913724820422 0.03528155133991294 0.16376092924050067 25148.193813968308 -4.400506798744024 -0.10578486732792958 TPDGTENGDFLALDLGGTNFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPDGTENGDFLALDLGGTNFR 21 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ; 182.35 1.094e-16 107834000.0 88140.0 101223.0 106618.0 101712.0 97686.0 108293.0 101219.0 103414.0 111045.0 101673.0 False True 87665.46403327459 104592.14636440425 121628.88765973112 114588.72877123383 110125.73306971557 100806.95980430169 96322.65027587047 111131.27780565168 83679.44767676597 95184.14209336524 0.9210091314085108 1.0988400385203954 1.2778272197949367 1.2038636505105527 1.156975633206782 1.0590730513221527 1.011961111982167 1.1675398376406445 0.8791322360681212 1.0 16.538433616644326 2.664212281839209 5.028374752388954 1.042498623433549 1.1419223095878595 0.18627349697934015 0.10879472731355544 0.4394035056339934 20.579315367388745 0.037045474624729055 0.03502937405383406 461.54312032472427 -2.664212281839209 0.09942368615431052 TPDS(ph)PPTPAPLLLDLGIPVGQR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPDSPPTPAPLLLDLGIPVGQR 22 0 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 T(0.013)PDS(0.987)PPTPAPLLLDLGIPVGQR;T(0.011)PDS(0.989)PPTPAPLLLDLGIPVGQR;T(0.165)PDS(0.834)PPT(0.001)PAPLLLDLGIPVGQR;T(0.052)PDS(0.89)PPT(0.057)PAPLLLDLGIPVGQR;T(0.138)PDS(0.862)PPTPAPLLLDLGIPVGQR;T(0.011)PDS(0.989)PPTPAPLLLDLGIPVGQR 205.65 1.0731e-22 513538000.0 35147.5 43632.4 36915.5 39045.5 38868.9 40948.9 37346.700000000004 33077.7 40949.49999999999 37172.8 True False 34958.26976525435 45084.678057657235 42112.88152472193 43988.65629657468 43818.624020980154 38118.1989263422 35540.097442751394 35546.12593915721 30858.044420187525 34800.40007876479 1.0045364330907762 1.295521831806983 1.2101263614615516 1.264027315692171 1.2591413869324533 1.0953379512898742 1.0212554270155638 1.021428657679354 0.8867152202372843 1.0 15.086816271495065 2.379942259216231 2.0635525235707375 0.9800407852199788 1.21476193794368 0.6208742942795604 0.08243674023817696 0.20557443423705796 1.7916716034271811 0.034600204998305635 0.026108700279218047 239.851400802394 -2.379942259216231 0.2347211527237012 TPDTIRR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPDTIRR 7 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 133.79 0.0051908 326994000.0 306620.0 483970.0 477160.0 548750.0 451730.0 430000.0 520670.0 377870.0 595940.0 504110.0 False True 304969.1919886847 500078.64888395654 544339.9804509295 618221.6937353953 509255.1378865197 400275.11211112206 495483.2029474451 406068.5781849808 449078.5721868784 471937.2682097151 0.64620705447904 1.0596294943626623 1.153415966736157 1.3099658267731373 1.0790737926215686 0.8481532166966977 1.0498920859271212 0.8604291407741417 0.9515641218385853 1.0 18.848235577969938 2.7636889245856135 23.661975130333907 0.9364459240741687 1.070438237280858 0.0883323514625628 0.16587168034059882 850.24849416001 800630.7239291113 0.05218212521084753 0.0553197417044055 580.348577917295 -2.7636889245856135 0.13399231320668936 TPDVFS(ph)SSPLHLQPPPLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPDVFSSSPLHLQPPPLGK 19 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 T(0.001)PDVFS(0.395)S(0.302)S(0.302)PLHLQPPPLGK 172.84 4.8776e-12 241020000.0 356220.0 356890.0 325270.0 359390.0 326190.0 377000.0 317780.0 323790.0 380980.0 339210.0 True False 354302.15109976224 368768.86790543905 371065.18870247743 404888.73715091305 367728.36302039697 350938.8773625423 302407.767362512 347952.85397230537 287092.58387045143 317561.32738770795 1.1156967821437456 1.1612524451228667 1.1684835548298584 1.2749938428635796 1.1579758972711451 1.10510583971103 0.9522814690634698 1.095702857884495 0.9040539861453045 1.0 18.276675706240553 2.49592260801626 2.981515975378322 1.0050099987013832 1.179604802528164 0.6790958538763617 0.06008924732311882 0.1625469863682975 2.9438616587697726 0.02186219262009175 0.01899234153775853 313.2727417445358 -2.49592260801626 0.17459480382678083 TPDVFSS(ph)SPLHLQPPPLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPDVFSSSPLHLQPPPLGK 19 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 TPDVFS(0.116)S(0.505)S(0.379)PLHLQPPPLGK 173.56 3.9892e-12 305900000.0 332110.0 368840.0 399320.0 396920.0 373150.0 380020.0 342570.0 337940.0 410150.0 344460.0 True False 330321.95666089014 381116.6164315114 455540.78504833934 447170.0313028752 420668.4406666697 353750.11187085696 325998.5803555157 363158.79882454884 309074.02822842554 322476.2678929569 1.0243295074679342 1.1818439196214576 1.4126335188161878 1.386675783072847 1.3044942606638787 1.0969802962005288 1.010922702887792 1.1261566663414007 0.9584396093638118 1.0 18.29883346612631 2.627406318673603 4.2216267954012014 1.0446609629892936 1.2724736599648658 0.5102213380483428 0.11011878808226574 0.21485926047942563 6.487663551082226 0.03954763909828167 0.03710787201865033 424.03950481117084 -2.627406318673603 0.22781269697557227 TPDVLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPDVLKK 7 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 98.299 0.018222 3968200000.0 3511000.0 3042700.0 2793400.0 2553400.0 2840700.0 3596900.0 3755600.0 3523400.0 5046400.0 3708000.0 False True 3492097.166108776 3143974.4301490104 3186686.439331937 2876660.178193997 3202446.306851967 3348254.7691918504 3573927.2802147698 3786333.9994626804 3802782.33829557 3471352.2654214846 1.0059760286773352 0.9056915546907987 0.9179956961080745 0.8286857565130225 0.9225356754345795 0.9645390364280163 1.029549007692203 1.0907374734563136 1.0954757822118764 1.0 21.72706634353414 2.2980659449986045 2.089422555261982 1.070824044197134 0.9115710901241845 0.6559080921998691 0.04721261977712209 0.17907024176732472 1.5977386284993422 0.021518337692662273 0.015131889338440625 198.63965167933463 -2.2980659449986045 -0.15925295407294948 TPEAPAHSEKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPEAPAHSEKPR 12 1 B8ZZZ7;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3;Q9NUQ6-2 B8ZZZ7 SPATS2L SPATS2-like protein 0 100.38 0.0019637 83688000.0 140550.0 167800.0 143530.0 147560.0 143400.0 148910.0 151210.0 145760.0 176770.0 158960.0 False True 139793.29441657284 173385.1215627579 163737.77641487552 166241.08087033217 161661.14000160925 138616.20219643533 143895.39462170526 156637.3513542827 133207.40209664454 148815.03670749717 0.9393761377174742 1.1651048536416007 1.100277095900663 1.1170986786576325 1.0863226161705801 0.9314663710287011 0.9669412299009696 1.0525640071047433 0.8951205808487609 1.0 17.183160782383556 2.757252899343124 22.899714706377335 0.9788943649504305 1.0892788576854706 0.409802906253233 0.06663861893986507 276.99963439426296 339348.02008115244 0.019797797507238757 0.02095069162569747 571.8115183144777 -2.757252899343124 0.11038449273504014 TPEEIRK ddPTM_BT-474_Trastuzumab_2h_R1 4 TPEEIRK 7 1 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 ;;; 116.3 0.008797899999999999 2513310000.0 1932380.0 2040080.0 1893480.0 1726250.0 1727200.0 2039060.0 2152250.0 1965750.0 2770460.0 2061740.0 False True 1921976.2807876018 2107982.829545599 2160065.525576801 1944793.073003598 1947148.6820835392 1898104.5816309396 2048137.4451065753 2112444.246876245 2087717.2552620338 1930157.9880555782 0.9957611204271323 1.0921296819174682 1.1191133259266663 1.0075823248866602 1.0088027478232895 0.9833933767997257 1.0611242487822712 1.094441107903452 1.0816302438357284 1.0 20.88028750969618 -0.45734297267812885 6.513360576460174 1.0000000345859614 1.0519651426452008 0.09368431008998912 0.045369582140516174 0.0 0.0 0.046697711226105325 0.011006756091290083 0.3488646999147114 0.45734297267812885 0.05196510805923937 TPEELDDS(ph)DFETEDFDVR ddPTM_BT-474_Trastuzumab_2h_R1 12 TPEELDDSDFETEDFDVR 18 0 P35221-2;P35221;G3XAM7;P35221-3 P35221-2 CTNNA1 Catenin alpha-1 1 TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR 361.61 3.992299999999999e-91 47468293000.0 4378102.7 5357645.8 4844280.9 5317674.0 5276698.1 5817239.5 5426657.0 4676510.2 5935065.6 5275731.9 True False 4354531.481516139 5535971.801687717 5526313.543475599 5990890.9831666 5948654.325595012 5415107.425673836 5164148.869067115 5025495.137961628 4472448.208684527 4939030.173360675 0.8816571935524694 1.1208621140941248 1.1189066171902566 1.2129690997798066 1.2044174902352047 1.0963908369867728 1.0455795344034642 1.0175064661615785 0.9055316634442284 1.0 22.235796351732542 1.801519674776236 1.7453348009608252 0.9584085599364963 1.115603132601675 0.3090539891602091 0.08876419287877378 0.4127467887300354 2.4281381188016704 0.0645466576635849 0.02727470784037759 63.31690454211379 -1.801519674776236 0.15719457266517878 TPEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPEELR 6 0 P08758;D6RBL5;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 98.133 0.093712 905780000.0 1273500.0 1392500.0 1217000.0 1203900.0 1169100.0 1290900.0 1216800.0 1151300.0 1444800.0 1399400.0 False True 1266643.617499151 1438848.5207159733 1388343.021646369 1356313.6165613534 1317977.955201406 1201663.121451738 1157938.7353725994 1237215.8521829413 1088748.3993281221 1310089.0939133833 0.9668377695714909 1.0982829544958437 1.0597317603028298 1.0352834954986858 1.0060216219833247 0.9172377108050227 0.8838625867143939 0.9443753542648298 0.8310491281748696 1.0 20.321233496336003 2.864014139752638 2.532630726790408 0.9107008884938426 1.0453137595427004 0.5820008678493667 0.05048021624209256 0.1869207739527177 2.3436508418447723 0.015850588322345174 0.01704036396993813 731.1628882852542 -2.864014139752638 0.13461287104885789 TPEEREWR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPEEREWR 8 1 Q6P4R8-3;Q6P4R8;E9PQ59;Q6P4R8-2;E9PJG2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 0 ;;; 69.598 0.048796 9304800000.0 4441300.0 5947750.0 5368100.0 5099410.0 5355060.0 5495560.0 6053490.0 5025950.0 6133200.0 5293590.0 False True 4417388.534274814 6145717.263259197 6123881.819638362 5744994.783145718 6036995.149072655 5115664.872356739 5760659.562122522 5401011.910256976 4621755.04066946 4955748.554129584 0.8913665586592041 1.240118863201407 1.2357127793611284 1.159258731631665 1.2181802775368975 1.032268852319777 1.1624196625799774 1.089847850685717 0.9326048305695797 1.0 22.240671558878347 1.3966178318666156 3.8333273209881242 0.9679449600429287 1.141607863436171 0.29584190900419494 0.10122673136850596 0.26078147660679 6.310401410169093 0.07337450831275694 0.025109897987676273 24.924005123970108 -1.3966178318666156 0.1736629033932423 TPEEVIEYSAVFWER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPEEVIEYSAVFWER 15 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 ; 156.14 5.069e-06 75098000.0 12528.5 15782.1 14506.1 14666.400000000001 13781.9 17015.0 16781.8 14191.3 19901.6 18202.9 False True 12461.047948047211 16307.397658019083 16548.432790718503 16523.16473622014 15536.943273278794 15838.793099001736 15970.000221298413 15250.32686796126 14997.117347777245 17041.175337713245 0.7312317197083285 0.9569408996062458 0.9710851782679408 0.9696024134939383 0.9117295588699516 0.9294425287644006 0.9371419461869951 0.8949105073880251 0.8800518186434967 1.0 14.056737221886317 4.742387192777609 24.994026993486862 0.9346342200582929 0.731231641523157 0.7566804207594385 0.0352658473864523 193.08271522473783 1261106.5114444206 0.00871563213164857 0.06635648616381298 55256.98602597003 -4.742387192777609 -0.20340257853513588 TPEFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPEFLR 6 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 107.55 0.072514 2045920000.0 737960.0 861960.0 821610.0 839350.0 819940.0 826800.0 836430.0 765560.0 916610.0 840620.0 False True 733986.9053550638 890649.8175341763 937285.5464378579 945611.6239395061 924354.4988348642 769645.2620778512 795968.685427107 822689.9746349102 690723.7474447323 786970.9119090106 0.932673487987733 1.1317442666002286 1.1910040539671518 1.20158395898734 1.1745726364810518 0.9779843834518211 1.0114334257873265 1.0453880342784887 0.8776992097067415 1.0 19.585950786128695 2.732103608606356 24.461027323067487 0.9926741806865124 1.1343926396702224 0.4328251407725433 0.08164003598674169 393.1533283938326 1489374.5015304515 0.02690767681755127 0.02593878126806477 539.639347641264 -2.732103608606356 0.14171845898371005 TPEKLDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPEKLDNTPASPPRSPAEPNDIPIAK 26 2 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;E9PGB3;O95359-2;Q4VXL4;H0Y911;H0Y8P9 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 2 TPEKLDNT(0.006)PAS(0.994)PPRS(1)PAEPNDIPIAK;TPEKLDNT(0.117)PAS(0.883)PPRS(0.999)PAEPNDIPIAK;T(0.005)PEKLDNT(0.019)PAS(0.976)PPRS(1)PAEPNDIPIAK 120.58 8.423899999999999e-05 956310000.0 866550.0 788390.0 715710.0 684090.0 718880.0 931660.0 937320.0 843530.0 1301140.0 932500.0 True False 861884.5910827562 814631.0845581801 816475.7469371604 770695.7238586713 810425.106864413 867256.5370917403 891978.250689879 906478.4919585482 980491.4813827482 872987.0516465845 0.9872822162220076 0.9331536854088084 0.9352667320748511 0.882826065295039 0.928335770084825 0.9934357393456917 1.0217542734539695 1.038364189077941 1.1231455031702866 1.0 19.73560073005121 2.3498645864822896 1.6937130611232079 1.0551403622602709 0.9307042406944288 0.6692059151964205 0.03744724178364909 0.2126904824992524 1.237083919145367 0.01836209023062986 0.012725041001808771 223.80232115617918 -2.3498645864822896 -0.12443612156584205 TPELNLDQFHDK ddPTM_BT-474_Trastuzumab_2h_R1 6 TPELNLDQFHDK 12 0 P27824;P27824-2;P27824-3;H0Y9Q7;D6RGY2;D6RFL1;H0Y9H1 P27824 CANX Calnexin 0 ;;;;; 233.59 5.321900000000001e-16 11428480000.0 4950720.0 5638460.0 6552190.0 4183370.0 6078970.0 7922860.0 5866050.0 4993980.0 7737500.0 6329140.0 False True 4924065.8735967 5826132.732578957 7474681.39934357 4712984.213069411 6853090.796621917 7375171.336606332 5582286.751012852 5366656.146516603 5830696.8021880835 5925208.866550632 0.8310366747397466 0.9832788790736162 1.261505133015668 0.7954123338462297 1.1565990247718394 1.244710777748464 0.9421248898965123 0.905732821810349 0.9840491590269342 1.0 22.498434579947006 TPELRDDDFLGGAECSLGQIVSSQVLTLPLMLKPGKPAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPELRDDDFLGGAECSLGQIVSSQVLTLPLMLKPGKPAGR 40 3 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX45;Q5JX60;Q5JX52;Q5JX44;Q5JX61;Q5JX59;Q5JX58;Q5JX56;Q5JX54;Q5JX55;E7EV27;Q5JX57 Q99829 CPNE1 Copine-1 0 166.88 4.9773e-19 78743000.0 78711.0 66351.0 70197.0 63091.0 65205.0 79345.0 87024.0 81746.0 101830.0 90961.0 False True 78287.2287216143 68559.45292497343 80080.12743673811 71078.31413113403 73508.4702496857 73860.06690803949 82814.31665603646 87846.3016177772 76735.36095209206 85155.7911043699 0.9193412180935852 0.805106171122814 0.9403955549962436 0.8346856180810766 0.8632233850025675 0.8673522487450562 0.9725036381205872 1.031595156107583 0.9011173515849619 1.0 16.37781702470237 2.212442997240481 5.523334974403185 0.9855731503021411 0.8694443295876144 0.5367626548397413 0.04736967779321165 0.12074842600875695 10.249817620234484 0.016684785652171765 0.012603535098383058 163.09588257910326 -2.212442997240481 -0.11612882071452668 TPELTWER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPELTWER 8 0 O43865-2;O43865;H0Y8B3;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 O43865-2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Adenosylhomocysteinase;Putative adenosylhomocysteinase 3 0 ; 114.28 0.0062496 400800000.0 229520.0 258700.0 248450.0 250310.0 187438.0 224560.0 245120.0 183447.0 350780.0 247190.0 False True 228284.28982206935 267310.6731125473 283429.6004338873 281999.22033513756 211307.1182679331 209036.69575738028 233262.60915066698 197136.7466649912 264334.96921118384 231414.1225699937 0.9864751869368833 1.1551182362765968 1.2247722709670017 1.2185912303163082 0.9131124579660042 0.9033013777893131 1.0079877863984477 0.8518786341804402 1.1422594536391482 1.0 17.820117385295266 3.2342109918397295 24.999769407382576 0.954572657110261 1.1524829566104966 0.4426057530068874 0.09602006342582953 90.22451649735761 518571.95138505346 0.0272060928521317 0.03360097965761231 1714.7901959742517 -3.2342109918397295 0.19791029950023564 TPEPVVPTAPELRPSTSTDRPVT(ph)PKPTSR ddPTM_BT-474_Trastuzumab_2h_R1 7 TPEPVVPTAPELRPSTSTDRPVTPKPTSR 29 3 Q14676;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 TPEPVVPT(0.003)APELRPS(0.073)T(0.073)S(0.073)T(0.073)DRPVT(0.561)PKPT(0.073)S(0.073)R;TPEPVVPTAPELRPS(0.12)T(0.12)S(0.12)T(0.12)DRPVT(0.467)PKPT(0.026)S(0.026)R;TPEPVVPTAPELRPS(0.046)T(0.046)S(0.046)T(0.046)DRPVT(0.396)PKPT(0.246)S(0.176)R;TPEPVVPTAPELRPS(0.031)T(0.031)S(0.031)T(0.031)DRPVT(0.87)PKPT(0.002)S(0.002)R;TPEPVVPTAPELRPS(0.004)T(0.004)S(0.004)T(0.004)DRPVT(0.951)PKPT(0.017)S(0.017)R;TPEPVVPTAPELRPS(0.148)T(0.148)S(0.148)T(0.148)DRPVT(0.384)PKPT(0.012)S(0.012)R;TPEPVVPTAPELRPS(0.088)T(0.088)S(0.064)T(0.064)DRPVT(0.232)PKPT(0.232)S(0.232)R 159.95 7.2378e-12 9346940000.0 1964390.0 1643970.0 1624890.0 1602870.0 1416670.0 1972290.0 1838760.0 1855320.0 2672650.0 2061080.0 True False 1953813.9425042444 1698688.5476491477 1853660.3882029322 1805793.1776540368 1597074.527239052 1835950.2345712685 1749812.1540546683 1993773.3995240678 2014011.2191751853 1929540.1098206325 1.012580113033187 0.8803592830247284 0.9606747114343459 0.9358671366628917 0.8276969828771863 0.9514962789459381 0.9068545116780851 1.0332894296296367 1.0437778457802596 1.0 20.879825603168552 1.7118661884059305 6.209390050189358 1.028642476145531 0.9224222883225116 0.48068678972756895 0.04772335801546395 0.10828557885579283 10.12668894974803 0.023205064103638394 0.01187771505331849 51.50699206075528 -1.7118661884059305 -0.10622018782301945 TPES(ph)FLGPNAALVDLDSLVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPESFLGPNAALVDLDSLVSR 21 0 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 T(0.499)PES(0.501)FLGPNAALVDLDSLVSR 207.4 3.8688999999999997e-22 737890000.0 56507.0 44551.0 60559.0 71228.0 59263.0 37198.0 57061.0 41858.0 60234.0 44391.0 True False 56202.77259051788 46033.8531033518 69085.18081173579 80245.45749682855 66809.79177067906 34626.58981467331 54300.741435811884 44981.656510617235 45390.13779424844 41557.928374952826 1.3523959154901373 1.1077032687485124 1.6623826911779793 1.930930165065516 1.6076304662709238 0.8332126063228631 1.306627725662553 1.0823844755872842 1.092213677850345 1.0 15.342836118544378 2.7539650722697258 24.961702789371333 1.0894010091542166 1.538008003969398 0.5149620277572167 0.2269775072652834 747.6169414871391 1211452.9474667117 0.07553550622958015 0.0798606141682018 567.49896299627 -2.7539650722697258 0.4486069948151814 TPES(ph)FLGPNAALVDLDSLVSRPGPTPPGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPESFLGPNAALVDLDSLVSRPGPTPPGAK 30 1 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 Q9Y6I3 EPN1 Epsin-1 1 T(0.176)PES(0.824)FLGPNAALVDLDSLVSRPGPTPPGAK 137.57 1.1141e-06 142440000.0 54704.0 62521.0 51347.0 59375.0 52459.0 66262.0 63338.0 57451.0 83901.0 63415.0 True False 54409.47974218577 64601.97369025738 58576.21128387526 66891.86891214411 59139.34270114662 61681.463903970165 60274.098965343306 61738.28535026681 63224.722765800594 59367.800407687006 0.9164813142570257 1.0881651879743999 0.9866663558633503 1.1267365213598663 0.996151824642794 1.0389716897104981 1.0152658267854395 1.039928798545699 1.064966569952526 1.0 15.857393041422954 4.753280161288553 24.718114513600952 1.039464865434706 0.9164812128546939 0.439026672857578 0.04176796824302559 1921.0112802453457 3225836.111609549 0.008945225637728569 0.19393159064537072 56660.46851343962 -4.753280161288553 -0.1229836525800122 TPES(ph)FLGPSASSLVNLDSLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPESFLGPSASSLVNLDSLVK 21 0 Q9H201 Q9H201 EPN3 Epsin-3 1 T(0.443)PES(0.557)FLGPSASSLVNLDSLVK;T(0.437)PES(0.54)FLGPS(0.021)AS(0.001)SLVNLDSLVK 162.65 1.1805e-11 191843000.0 127032.0 121641.0 123409.0 108814.0 113881.0 146020.0 136401.0 127722.0 150564.0 142113.0 True False 126348.07382658207 125689.74715146255 140783.91450974272 122589.84124304933 128383.07032443015 135925.98109410706 129802.76252757893 137253.26419917462 113459.51965423553 133043.22667093933 0.9496768605821879 0.9447286441897234 1.0581817506422084 0.9214286537581899 0.9649726148176239 1.021667802978785 0.9756435241053258 1.0316441327648203 0.8528019238052539 1.0 17.02153553799508 TPESQPDT(ph)PPGTPLVSQDEKR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPESQPDTPPGTPLVSQDEKR 21 1 A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60;A0A0D9SEV0;M0R000;M0QYI1 A0A0D9SFD6 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 TPESQPDT(0.984)PPGT(0.016)PLVSQDEKR;TPESQPDT(0.997)PPGT(0.003)PLVSQDEKR;TPESQPDT(0.999)PPGT(0.001)PLVSQDEKR;TPESQPDT(0.997)PPGT(0.001)PLVS(0.001)QDEKR;TPESQPDT(1)PPGTPLVSQDEKR;TPESQPDT(1)PPGTPLVSQDEKR 196.28 5.701400000000001e-22 15887600000.0 4277940.0 4283470.0 4151010.0 3923410.0 3994640.0 5204700.0 5190250.0 4705530.0 6789790.0 5380470.0 True False 4254908.046363818 4426042.709537705 4735436.126774275 4420113.303723711 4503333.725913724 4844911.339545952 4939177.778819553 5056680.54279718 5116537.233024707 5037083.798147879 0.844716549668746 0.8786914982762742 0.9401146211852741 0.8775143477559324 0.8940358958430644 0.961848469014435 0.9805629560174628 1.0038904940704991 1.0157736972543605 1.0 22.264157301544564 2.518972196354639 1.4483976382642378 1.0062665115149436 0.8856169957345865 0.8474751686450622 0.022906139532811617 0.15632111529040937 0.6643899060918728 0.01143060287301181 0.00894356762807972 330.3483913701306 -2.518972196354639 -0.1206495157803571 TPGHPPPPEIPSELGACDFEKPES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPGHPPPPEIPSELGACDFEKPESPR 26 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR 143.82 1.5409e-07 749950000.0 384260.0 323720.0 285370.0 287440.0 291720.0 332630.0 283760.0 268480.0 423660.0 294400.0 True False 382191.18685529946 334494.8245071277 325547.6155194942 323829.8745281128 328868.8128400935 309636.07102679694 270033.44473153277 288515.340913816 319254.66975315067 275611.13995147956 1.3867044232050378 1.2136476942333114 1.181184532587492 1.174952052319518 1.193234834041867 1.1234526698786826 0.9797624463912136 1.046820317076473 1.1583518351593278 1.0 18.072274676078262 7.999999999999993 0.26601345862336023 1.021142046494548 3.3668957978113703 0.7426832727832888 0.057001271634304365 26.08874644758294 0.36372899537771275 0.07036348653760832 27.9611087919397 99999999.99999836 -7.999999999999993 2.3457537513168223 TPGLHGDCDDDKYR ddPTM_BT-474_Trastuzumab_2h_R1 3 TPGLHGDCDDDKYR 14 1 O95159 O95159 ZFPL1 Zinc finger protein-like 1 0 ;; 141.85 5.745399999999998e-06 1876560000.0 1727010.0 1678820.0 1518520.0 1298740.0 1411780.0 1883710.0 1642110.0 1691810.0 2291700.0 1655700.0 False True 1717711.9700488488 1734698.508831878 1732314.4167875473 1463160.3508371885 1591561.8147243496 1753493.5614763773 1562674.865830621 1818061.453037108 1726941.2422067134 1550031.8084839126 1.108178529399951 1.1191373617865223 1.1175992694510737 0.9439550484246558 1.0267930025778358 1.1312629533657577 1.0081566438040226 1.1729188027537032 1.1141327763433682 1.0 20.5638663909341 1.7408972449661242 24.999999999148713 1.1124598315698064 1.065537701383403 0.02317536837596379 0.0689947543486811 1.0022352063227349 10790.865129669979 0.03212305492086124 0.01781393070921924 55.067738950362994 -1.7408972449661242 -0.046922130186403344 TPGNERPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPGNERPPR 9 1 P82673;H0YG82;P82673-2 P82673 MRPS35 28S ribosomal protein S35, mitochondrial 0 84.213 0.014268 25770000.0 7572.9 12300.0 11192.0 8102.0 13098.0 15161.0 9519.4 10710.0 13401.0 13608.0 False True 7532.128347828285 12709.39806449299 12767.736317392097 9127.71236928322 14765.95266207168 14112.955755155168 9058.910254360557 11509.234584278047 10098.503114200006 12739.525789605053 0.5912408728725368 0.9976350983851655 1.0022144095669607 0.7164876087248923 1.1590661148564974 1.1078085627544143 0.7110869277216164 0.9034272369595676 0.7926906606241171 1.0 13.637023955909907 4.746376670006317 24.176992834079513 0.9259419137313483 0.5912406110250212 0.329602883397737 0.14565746480273128 745.3777370581296 2305550.2705153255 0.03480130664635474 0.3706113664208039 55766.92139736173 -4.746376670006317 -0.33470130270632703 TPGNNLHEVETAQGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPGNNLHEVETAQGQR 16 0 Q8N9N8;E9PQD0;E9PS30;E9PLI6;E9PS76 Q8N9N8 EIF1AD Probable RNA-binding protein EIF1AD 0 93.495 0.0044123 313280000.0 134720.0 140790.0 138300.0 155120.0 152870.0 157360.0 137510.0 133540.0 175140.0 143550.0 False True 133994.68248879915 145476.11004064768 157771.43787485035 174758.17609518825 172337.08836852174 146482.07358559576 130858.11596078743 143505.43290237998 131979.0937557638 134388.5161006617 0.9970694399842353 1.0825040283329044 1.1739949398404996 1.3003951614756148 1.2823795765364001 1.0899895157401362 0.9737298971496203 1.067839999028558 0.9820712184730639 1.0 17.036050335228428 2.482453407103548 9.827993241506583 1.0180903482443486 1.1719436090491657 0.4380792279075928 0.08564386794076033 0.15222769418602955 210.34438386552026 0.03190377992665362 0.028023234091621857 303.7060246165467 -2.482453407103548 0.1538532608048171 TPGRQS(ph)PGPGHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPGRQSPGPGHR 12 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 T(0.017)PGRQS(0.983)PGPGHR 52.372 0.090309 92663000.0 62002.0 70900.0 67056.0 71037.0 80249.0 72810.0 78332.0 58165.0 77461.0 76274.0 True False 61668.18812106978 73259.86364004489 76496.90193879943 80030.27691641223 90468.2344769118 67776.81607630425 74542.78190270091 62505.56765588537 58371.774474221755 71406.1280185432 0.863625991666365 1.0259604556771416 1.0712932357701042 1.1207760333346946 1.2669533692320978 0.9491736627800844 1.0439269565679736 0.8753529898673896 0.8174616954312857 1.0 16.123760270086652 1.7805033044312113 3.930583764455938 0.8836305453847944 1.0580980448356712 0.2859708748967372 0.10803358780811624 0.2544678262625337 7.583988345779112 0.057861468298840986 0.029985740996870534 60.3258297941102 -1.7805033044312113 0.1744674994508768 TPGVVASAPTKPQS(ph)PAQNATSSQDSSQDTLTEQITLENQVHQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPGVVASAPTKPQSPAQNATSSQDSSQDTLTEQITLENQVHQR 43 1 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A0A0A0MR80;A0A0A0MR72 Q96L91-4 EP400 E1A-binding protein p400 1 TPGVVAS(0.002)APT(0.053)KPQS(0.944)PAQNAT(0.001)SSQDSSQDTLTEQITLENQVHQR 169.73 2.3373e-20 1250200000.0 150300.0 128980.0 136600.0 124410.0 106790.0 163090.0 161740.0 144610.0 190980.0 152490.0 True False 149490.80149989986 133273.02132994347 155832.09265151512 140160.29324395527 120389.0735060798 151815.97217256489 153916.01829319875 155401.53251470107 143915.53800088924 142757.95764674264 1.0471626518349175 0.9335593162500276 1.091582530461277 0.9818037155643867 0.8433090210213354 1.0634501548995012 1.0781606912174169 1.0885665154950255 1.0081086923154998 1.0 17.123211641303484 TPHDILEDINAS(ph)PEMR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPHDILEDINASPEMR 16 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR 306.62 6.796300000000001e-47 2803050000.0 1072625.0 1256274.0 1147180.0 1199021.0 1177497.0 1177342.0 1122930.0 1090817.0 1365760.0 1198807.0 True False 1066850.106179841 1298088.320656331 1308692.9725326893 1350816.9356616067 1327444.263378485 1095955.118704959 1068609.5858908233 1172219.303596492 1029186.7482463854 1122298.1109096922 0.9505942278697171 1.1566341491960188 1.1660832000081622 1.2036168666154894 1.1827911412080248 0.9765276338357368 0.9521619750608409 1.04448122312737 0.9170350891993979 1.0 20.098024512655446 2.7302448634802383 24.824931694372058 0.9838924240842611 1.1391940543121173 0.530081933568811 0.07218691541658387 455.5138791705425 1359837.4659657436 0.023449325616843427 0.0224434592114838 537.3346704754005 -2.7302448634802383 0.15530163022785615 TPHTATLR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPHTATLR 8 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;; 95.741 0.0094349 604410000.0 330519.0 318545.0 281753.0 297204.0 320561.0 249423.0 333052.0 344680.0 372195.0 378894.0 False True 328739.52242811315 329147.5777604812 321421.373359022 334829.995926987 361382.543236094 232180.97508858735 316941.0023778064 370401.77184957557 280472.5294074826 354712.66053252644 0.9267769634570695 0.9279273462253514 0.9061457599976145 0.9439471244818557 1.0188036217640333 0.6545607217402853 0.8935147730616273 1.0442304802244589 0.7907034639993173 1.0 18.4362912988219 -1.060176542669432 4.024001658303999 1.000014623748583 0.9089462139761373 0.06914772186023654 0.10545760479329196 13862588.43337283 3653300.98434086 1813.82381093784 0.024553699921537577 0.08706096112727976 1.060176542669432 -0.09106840977244568 TPHYGSQT(ph)PLHDGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPHYGSQTPLHDGSR 15 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 1 TPHYGS(0.001)QT(0.999)PLHDGSR 145.52 1.4887e-05 130510000.0 71287.0 66114.0 86433.0 70614.0 83015.0 80381.0 65526.0 62325.0 97630.0 69753.0 True False 70903.19871273034 68314.56452324311 98602.01511089611 79553.7251597834 93586.46818154537 74824.45066652124 62356.25704637158 66976.00797993732 73570.3946749754 65301.30382145216 1.0857853452144688 1.0461439592390047 1.5099547687515593 1.2182563058357982 1.4331485392302572 1.1458339464569869 0.9549006435900121 1.025645799708137 1.126629797103787 1.0 15.994824176803004 2.475874584015299 9.250676017388452 1.0287438648173677 1.261701028065291 0.3908897358321832 0.13645381788534344 0.10801389680469549 142.02919217116616 0.047475413664092074 0.04111008802249908 299.1400652260724 -2.475874584015299 0.23295716324792326 TPHYGSQTPLHDGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPHYGSQTPLHDGSR 15 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 0 ;;; 173.03 5.7414e-07 1199800000.0 210974.0 331436.0 340694.0 327047.0 341701.0 312799.0 295204.0 254696.0 326451.0 317429.0 False True 209838.13942541505 342467.64690270746 388660.7538346656 368451.1166671153 385214.59692949726 291175.9413796441 280923.8547312073 273702.70884008246 246001.52526928656 297170.40945536044 0.7061205717285117 1.1524284922256076 1.307871650299854 1.2398647541738583 1.2962750821506757 0.979828179775023 0.9453291639839612 0.9210294838631866 0.8278129902642267 1.0 18.18093094207187 2.552605649301799 6.1333648458689645 0.9232619500891525 1.155764323231669 0.2855983682145564 0.1636328873699902 0.29272816288444775 18.898598643133887 0.055136973716765195 0.05154508710107936 356.94857235500103 -2.552605649301799 0.23250237314251654 TPIHAAATNGHSECLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPIHAAATNGHSECLR 16 0 O15084-2;O15084;O15084-4;O15084-1;B4DIW9 O15084-2 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 0 ; 125.52 4.4295e-05 137227000.0 120274.0 139279.0 142201.0 130119.0 138994.0 148643.0 164463.0 127154.0 181062.0 155674.0 False True 119626.45814769754 143914.81731906653 162221.66476675047 146592.0520585984 156694.06201801743 138367.65927798508 156507.2963803286 136642.877154929 136441.69620649802 145738.75204078315 0.8208280671582915 0.987484902291422 1.1130990384860355 1.005854997424271 1.0751708781900957 0.949422561538503 1.0738893683989554 0.9375878086062602 0.936207386819921 1.0 17.153025016516636 4.722989608532666 4.604614501874905 1.010777692133671 0.8111823519968068 0.48967889012118715 0.05790738126625099 0.14567529347152797 8.048147971768751 0.013924165109862963 0.09102556143764091 52843.26076912585 -4.722989608532666 -0.1995953401368643 TPIS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 6 TPISPLK 7 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 T(0.002)PIS(0.998)PLK;TPIS(1)PLK;TPIS(1)PLK;TPIS(1)PLK;T(0.004)PIS(0.996)PLK;TPIS(1)PLK 111.61 0.0068612 13310720000.0 26425560.0 21119950.0 18868990.0 17664910.0 17232660.0 29983300.0 30008500.0 24010600.0 38892000.0 30353500.0 True False 26283287.721115716 21822914.768470623 21525579.779798813 19901285.79477595 19427137.105021823 27910625.044096276 28556874.211397633 25802392.89535633 29307587.726100046 28416313.643061202 0.9249365716912287 0.7679713506329284 0.7575078192823581 0.7003472035379761 0.6836614118582413 0.9822042857030329 1.0049464744126215 0.9080133763816635 1.0313648735101317 1.0 24.760216074745014 2.7260294575332926 24.52431463368187 0.97539113918527 0.7627277481767548 0.7219713213836632 0.06760741581545976 335.13378858932265 655878.0338482142 0.022556769328077972 0.021409575670233178 532.1443525837021 -2.7260294575332926 -0.21266339100851517 TPISITSSYAAPFAMMSHHEMNGSLTS(ph)PGAYAGLHNIPPQMSAAAAAAAAAYGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPISITSSYAAPFAMMSHHEMNGSLTSPGAYAGLHNIPPQMSAAAAAAAAAYGR 54 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 T(0.021)PIS(0.02)IT(0.024)S(0.022)S(0.024)YAAPFAMMS(0.083)HHEMNGS(0.073)LT(0.339)S(0.391)PGAY(0.004)AGLHNIPPQMSAAAAAAAAAYGR 95.325 6.4178e-08 402680000.0 23637.0 38662.0 45738.0 53277.0 39356.0 47635.0 54381.0 28940.0 43322.0 37782.0 True False 23509.741018317578 39948.84129832744 52177.512838177194 60021.86273738615 44367.753318712224 44342.10457072863 51750.38327440611 31099.649754342347 32645.87358505875 35370.720413202405 0.6646667284034842 1.129432503258153 1.4751611567035405 1.696936393610533 1.2543638580273757 1.2536387173549788 1.463085361843234 0.879248411992597 0.9229632080909898 1.0 15.11026798298099 1.6874327184766762 7.692411838459737 0.9281125746445886 1.2925685040696056 0.26975518164629053 0.2566637300706582 0.16531151375641812 18.75829598260616 0.1333799212386782 0.06971636322807509 48.689208930268244 -1.6874327184766762 0.3644559294250169 TPITSVPLGPLAS(ph)SPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPITSVPLGPLASSPTK 17 0 Q15911 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 TPITSVPLGPLAS(0.566)S(0.423)PT(0.011)K;TPITSVPLGPLAS(0.615)S(0.384)PT(0.001)K 104.41 0.00089319 50722000.0 146075.0 134310.0 122901.0 116998.0 116524.0 155613.0 144066.0 159163.0 215082.0 150192.0 True False 145288.54843045824 138780.42715789037 140204.39252535775 131809.9348039247 131362.64070814184 144855.8395836001 137096.9771944355 171040.5512733375 162077.92305114274 140606.61797415972 1.0332980803020164 0.9870120564552306 0.9971393562081418 0.9374376306252409 0.9342564567784661 1.03022063734028 0.9750392916756648 1.2164473745095759 1.1527047971591846 1.0 17.101304974208603 1.7539900834594986 24.99999999999923 1.1419689727818745 0.9834336107189187 0.524798304279465 0.05941221705984402 3.4034493813934192 5521.401587443317 0.02614677074572133 0.014499867810764665 56.7531646425539 -1.7539900834594986 -0.15853536206295582 TPITSVPLGPLASS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPITSVPLGPLASSPTK 17 0 Q15911 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 TPITSVPLGPLAS(0.154)S(0.845)PT(0.001)K;TPITSVPLGPLAS(0.127)S(0.872)PTK 168.05 4.4455e-10 534480000.0 1875140.0 1703610.0 1594300.0 1532110.0 1512930.0 2001520.0 1965890.0 1958880.0 2839590.0 2015800.0 True False 1865044.4545876393 1760313.6289960064 1818763.5820959785 1726074.9689092226 1705592.6676613295 1863159.633471285 1870792.390270906 2105061.572591089 2139811.0930565787 1887149.9181867924 0.9882863235262239 0.9327895002042802 0.9637621073812086 0.9146464476800372 0.9037928842982934 0.9872875575573997 0.9913321523858566 1.1154713000298726 1.1338850572680244 1.0 20.8477776068006 1.9808668151187712 2.3934840263446353 1.094117821311521 0.9437553147694453 0.6611760975282753 0.04258849559374499 0.15551920854404447 1.655638639090694 0.022220146551584427 0.011971421905708842 95.69005740520448 -1.9808668151187712 -0.15036250654207572 TPKDS(ph)PGIPPSAGAHQLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPKDSPGIPPSAGAHQLFR 19 1 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 T(0.075)PKDS(0.925)PGIPPSAGAHQLFR 56.468 0.057242 384710000.0 163350.0 166810.0 178820.0 208720.0 185440.0 203100.0 226140.0 185930.0 245100.0 203250.0 True False 162470.54174989098 172362.17001122565 203996.3016686965 235143.9305994564 209054.68481100732 189060.17504597406 215200.74426130828 199805.0407334095 184698.3891717348 190278.41098892048 0.8538569399728239 0.9058419665973664 1.0720937840950058 1.235788807449881 1.098677899003372 0.9935976134306831 1.1309782499383967 1.0500667926275868 0.9706744354854288 1.0 17.53775235698364 4.2867857391039985 4.264352852354115 1.0774010024035285 0.8684130556882673 0.5167563254031312 0.07344023738444082 0.1539808117390908 5.788435847273767 0.018655011536813544 0.05368682365429791 19354.668581532078 -4.2867857391039985 -0.20898794671526122 TPKDS(ph)PGIPPSANAHQLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPKDSPGIPPSANAHQLFR 19 1 B4DG22;B1AXG1;B7ZB17;P51812 B4DG22 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 T(0.001)PKDS(0.999)PGIPPSANAHQLFR 115.36 8.421200000000001e-05 417630000.0 111150.0 114120.0 96950.0 122760.0 117530.0 136520.0 146430.0 123670.0 164690.0 153440.0 True False 110551.58074992597 117918.41521300317 110599.71729549355 138301.4034131336 132496.74884511242 127082.69373351245 139346.6214830783 132898.88338353543 124104.35623293783 143647.3278334068 0.7696041577476247 0.8208883311060098 0.7699392600171455 0.9627843796267964 0.9223753121170056 0.8846854003500505 0.9700606588706183 0.9251747692631168 0.8639517219343357 1.0 17.132171630152015 3.7418659394174103 24.99489843315726 0.9293148223872808 0.7902183506991017 0.7373590681800463 0.03985358735372216 141.48484750252987 1069906.2048934046 0.009845426392198134 0.016883401307097323 5519.070470602702 -3.7418659394174103 -0.13909647168817907 TPLALAGS(ph)PTPK ddPTM_BT-474_Trastuzumab_2h_R1 5 TPLALAGSPTPK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 TPLALAGS(1)PTPK;TPLALAGS(0.999)PT(0.001)PK;TPLALAGS(1)PTPK;TPLALAGS(0.999)PT(0.001)PK;TPLALAGS(0.988)PT(0.012)PK 148.52 6.975300000000001e-05 1833290000.0 2929770.0 2222020.0 1982180.0 1854030.0 1744890.0 2765450.0 2728030.0 2310020.0 3772240.0 2821840.0 True False 2913996.4438480493 2295978.5924605443 2261253.7145825834 2088750.0079020238 1967091.398726694 2574280.9506690763 2596064.7668133737 2482405.422443881 2842621.9974262994 2641747.7553012324 1.1030562770425343 0.86911348286496 0.8559688221727051 0.7906697388917998 0.7446174203344373 0.9744612995329438 0.9827072859639282 0.9396829873186807 1.076038388495635 1.0 21.333061288161243 2.515665150003307 24.22630449746333 0.9870635158032235 0.8662553574124722 0.2972265530132826 0.09329812565224098 508.21572949671554 319432.1626198348 0.03103473498999148 0.029252861385425644 327.8424223766326 -2.515665150003307 -0.12080815839075132 TPLAVELEVLDGHDPDPGR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPLAVELEVLDGHDPDPGR 19 0 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753 Q86TX2 ACOT1;ACOT2 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial 0 ;;;;; 196.87 8.145799999999999e-16 2325530000.0 1357130.0 1587910.0 1512660.0 1522020.0 1629020.0 1921470.0 1559400.0 1300160.0 1736940.0 1618130.0 False True 1349823.3628713165 1640762.6244381329 1725629.3797235799 1714707.5759437748 1836466.041041989 1788643.3015538545 1483965.8645135043 1397184.5412787043 1308894.4108035627 1514859.5580492078 0.8910551184095111 1.0831120388157034 1.1391348924423035 1.1319251126830037 1.2123011874493084 1.1807320962856898 0.9796062325569722 0.9223195205487946 0.8640368038401652 1.0 20.5307526176113 2.0768540336343673 5.107081527285546 0.9269174583853741 1.1122658531745677 0.4703934153621726 0.0866811522908202 0.17728548347132936 8.316893257839396 0.03519446866867817 0.025394750473969902 119.35868725199275 -2.0768540336343673 0.18534839478919363 TPLDLFAHFGPEPGDHSDPLPPSAPS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 9 TPLDLFAHFGPEPGDHSDPLPPSAPSPTR 29 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 TPLDLFAHFGPEPGDHSDPLPPS(0.02)APS(0.931)PT(0.049)R;TPLDLFAHFGPEPGDHSDPLPPS(0.005)APS(0.964)PT(0.031)R;TPLDLFAHFGPEPGDHSDPLPPS(0.318)APS(0.656)PT(0.026)R;TPLDLFAHFGPEPGDHSDPLPPS(0.079)APS(0.893)PT(0.028)R;TPLDLFAHFGPEPGDHS(0.001)DPLPPS(0.102)APS(0.679)PT(0.217)R;TPLDLFAHFGPEPGDHSDPLPPS(0.11)APS(0.863)PT(0.027)R;TPLDLFAHFGPEPGDHS(0.019)DPLPPS(0.013)APS(0.779)PT(0.188)R;TPLDLFAHFGPEPGDHSDPLPPS(0.017)APS(0.963)PT(0.02)R;TPLDLFAHFGPEPGDHSDPLPPSAPS(0.967)PT(0.033)R 255.87 1.0008999999999996e-57 5552241000.0 1088525.0 1296907.0 1160545.0 1157035.0 1181619.0 1311343.0 1264346.0 826955.0 1369434.0 1162540.0 True False 1082664.5023464982 1340073.765498164 1323939.6483620254 1303515.5123665289 1332091.1756454771 1220692.9449793834 1203184.7537092404 888666.5812924046 1031955.3401754632 1088345.7018994316 0.9947799678511907 1.231294213924312 1.2164697724734193 1.197703551446542 1.223959605225297 1.1216040480970093 1.1055170720198428 0.8165296924878394 0.9481870864877279 1.0 20.05370545605703 1.9093016283479878 4.6592511039361995 0.9080362624366 1.1701764700760242 0.655368679298443 0.07845762845954403 0.12155488954964966 4.331975177370042 0.035541101789439214 0.020826137360151622 81.15244861668836 -1.9093016283479878 0.26214020763942425 TPLEQEIFNLLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPLEQEIFNLLHK 13 0 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;Q5TAP6;X6RJY0 Q9BVJ6-3 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C 0 112.42 0.00090194 105290000.0 71986.0 102420.0 110560.0 107150.0 102340.0 98528.0 111540.0 88607.0 75548.0 95847.0 False True 71598.43537439649 105828.9877858025 126125.88699525277 120715.17901366307 115372.39238329622 91716.99126996433 106144.38407582174 95219.30427722924 56930.207691335105 89729.9624012548 0.7979323010771177 1.179416383933786 1.4056161801477474 1.3453162776759948 1.2857733280592885 1.0221445414166554 1.182931333473259 1.0611762417934287 0.6344615128306237 1.0 16.453302186208372 1.4521763158031842 4.325695912429811 0.817010587857451 1.1848825370032903 0.37162451189279433 0.18181931478019528 0.20137799859736355 7.2310019593617705 0.1260575971796773 0.047401987153792666 28.325417237499295 -1.4521763158031842 0.3678719491458393 TPLGAS(ph)LDEQSSSTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 TPLGASLDEQSSSTLK 16 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK 329.08 1.7941999999999992e-71 953820000.0 900230.0 843740.0 701880.0 769120.0 759560.0 862170.0 839550.0 760560.0 1006350.0 889390.0 True False 895383.261704956 871823.3758483999 800698.6031496758 866490.5131403505 856285.4637351631 802570.2172298759 798937.7591075498 817316.8492454259 758348.5268991246 832628.3687549112 1.0753696310442635 1.0470738309722738 0.9616518403606854 1.0406689774888114 1.0284125497857202 0.9638996788327264 0.9595370384776327 0.9816106199547563 0.9107887208228773 1.0 19.667313188289423 2.7376349533217077 9.75739431326678 0.9633588416568392 1.0282931196221252 0.49423329573304686 0.034084124553743066 0.09018887779045347 213.7814432375695 0.010730922070334478 0.010704773305347132 546.5563612440203 -2.7376349533217077 0.06493427796528606 TPLHEIALSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPLHEIALSIK 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 155.97 3.1282e-05 620000000.0 1352300.0 1438900.0 1538000.0 1339600.0 1290700.0 1612400.0 1620800.0 1277600.0 2262900.0 1746000.0 False True 1345019.3670546554 1486792.916666583 1754537.031464353 1509193.222647717 1455062.994421738 1500938.5831813344 1542395.7119427284 1372940.999521348 1705238.6163064833 1634568.7851741952 0.8228588354642521 0.9095933619631285 1.073394431227544 0.9232974692385815 0.8901815620238169 0.9182474281872329 0.9436101594087128 0.8399407917085816 1.0432345409830868 1.0 20.64047865853805 1.2178497404014872 24.99909495856141 1.0216173709220753 0.9172941401894872 0.30256687177279773 0.06459673201425624 359.18522191529195 433543.75029535696 0.06308848827940722 0.015842801790263056 16.513903422445328 -1.2178497404014872 -0.10432323073258809 TPLRPLDPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPLRPLDPTR 10 1 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;C9JF13;C9J6B6;C9K073;C9J2Z7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 79.65899999999998 0.022457 0.0 289080.0 336920.0 407740.0 282740.0 179560.0 216400.0 325080.0 194370.0 495660.0 244210.0 False True 287523.62539980747 348134.1785275589 465146.2478603867 318534.85501001496 202425.90166449745 201440.7773508068 309354.63847380417 208874.8763908614 373511.2345037218 228624.30872129992 1.2576249087769036 1.5227347453762898 2.0345441412680847 1.3932676572827554 0.885408479949789 0.8810995579493225 1.3531134996275354 0.9136162184988225 1.6337336855944025 1.0 17.802619282220054 3.467074956818699 11.605630190536099 1.102982214246856 1.6162759869843142 0.3844074292594257 0.28277697024408954 0.35765465406918273 403.562262317643 0.07649138440984227 0.10505201981549986 2931.399144824301 -3.467074956818699 0.5132937727374582 TPLS(ph)PSPMK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPLSPSPMK 9 0 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 T(0.003)PLS(0.88)PS(0.117)PMK;TPLS(0.991)PS(0.009)PMK;T(0.007)PLS(0.965)PS(0.028)PMK 138.36 0.00014554 633230000.0 2321720.0 2538430.0 2261540.0 2173820.0 2082150.0 2297690.0 2264570.0 1883950.0 2535630.0 2182950.0 True False 2309220.1174873416 2622920.1080366597 2579945.1743419324 2449025.3891132167 2347299.4606300625 2138856.0984804747 2155024.097602506 2024539.915504259 1910757.9622012482 2043632.262082479 1.1299587309970465 1.2834599241273874 1.2624312221969651 1.1983689211373276 1.1485918989349602 1.0465953871275069 1.0545067904763443 0.9906576408425043 0.9349813063991118 1.0 20.962704185658378 2.707589201981351 1.072642524564408 0.9792524756770927 1.2343269272139208 0.844955228511462 0.04434616709660065 0.17806285283298615 0.42795062182526206 0.023419961719924845 0.02101894442386782 510.0223429343249 -2.707589201981351 0.25507445153682806 TPLSEAEFEEIMNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPLSEAEFEEIMNR 14 0 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 ; 214.04 4.3508e-10 167442000.0 39036.0 52667.0 45358.0 54186.0 49625.0 46559.0 47268.0 43440.0 49017.0 46888.0 False True 38825.83451330731 54419.98925712617 51744.01214119642 61045.94204418423 55944.44959958059 43340.48591809708 44981.46625870482 46681.71338385043 36937.41714414905 43895.567697163606 0.8845046675593198 1.23976046129693 1.1787981077766072 1.39070856687266 1.2744897158078115 0.987354491394301 1.0247382279922395 1.0634721415589952 0.841483983052253 1.0 15.42178765224522 2.728298627613911 24.285661599957002 0.9970518844463173 1.2063362047692272 0.38524247043137205 0.13174651129292733 521.4545676972709 1234053.0896457636 0.04298843021856044 0.04095612810088413 534.9320605360552 -2.728298627613911 0.2092843203229099 TPLSFTNPLHS(ph)DDS(ph)DSDER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPLSFTNPLHSDDSDSDER 19 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 TPLSFTNPLHS(1)DDS(1)DSDER;T(0.002)PLS(0.003)FT(0.003)NPLHS(0.991)DDS(0.978)DS(0.022)DER 125.83 1.4024000000000003e-05 67299000.0 98844.0 113671.0 99265.0 101936.0 107988.0 110203.0 99429.0 112789.0 122105.0 115863.0 True False 98311.83488660082 117454.47051942938 113240.6491731529 114841.08714826644 121739.63170497744 102584.92599995804 94619.23941433452 121205.88791093697 92013.85887317294 108468.52414469518 0.9063627965976054 1.0828438152504694 1.0439954822478434 1.0587503430494765 1.1223498490915098 0.9457575532521442 0.8723197827243786 1.1174291239479792 0.8483000907288828 1.0 16.726916930485732 2.7092637019030583 24.94269386857505 0.9696373366879939 1.0460276039942802 0.19181475808017312 0.08624428238192632 1300.9300615826958 1107579.198733823 0.02758231228185896 0.02600887326425438 511.99262108476995 -2.7092637019030583 0.07639026730628629 TPLYLQPDAYGS(ph)LDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPLYLQPDAYGSLDR 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR 247.56 2.916e-18 707850000.0 568760.0 461090.0 433600.0 488810.0 339800.0 479070.0 477850.0 418930.0 595970.0 508800.0 True False 565697.8593551759 476437.1019152096 494647.11108123744 550693.2958811821 383071.5158476074 445953.01850947767 454734.56993573095 450192.683883436 449101.17908885755 476327.9483944038 1.1876226479298944 1.0002291562382046 1.0384591388109463 1.1561221585620736 0.8042180122725462 0.9362310568016987 0.9546669924965365 0.9451317845214332 0.9428402859892608 1.0 18.8615956753056 3.2516373283279316 24.99999143960265 0.9309238673495775 1.0847133968997213 0.581537296382367 0.06835809616090281 172.56748727838584 329911.70561280975 0.018459957632147545 0.024842657482207278 1784.996333287363 -3.2516373283279316 0.1537895295501438 TPMAGVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPMAGVSPK 9 0 A0A087WWD1;B7Z6K7;Q9H707 A0A087WWD1 ZNF814;ZNF552 Putative uncharacterized zinc finger protein 814;Zinc finger protein 552 1 TPMAGVS(1)PK;TPMAGVS(1)PK 144.1 0.00010527 233940000.0 570930.0 472870.0 398360.0 349180.0 382650.0 602560.0 615950.0 495600.0 872550.0 571010.0 True False 567856.1763162866 488609.1920940481 454445.6253928085 393386.1521977677 431378.20935575897 560906.4454736693 586154.1453424989 532584.1886058074 657521.744070981 534567.6529337441 1.062271862503937 0.9140268578028004 0.8501180774758436 0.7358959152108014 0.8069665401344911 1.0492712052354385 1.096501335472965 0.9962895915660976 1.2300066052677456 1.0 19.028013016163012 2.6716936412611587 6.386601688978184 1.0709696026107114 0.8673447450684127 0.5054781840161071 0.09913030344691835 0.20830071196556788 16.085311856048136 0.03348045952809096 0.03161237916785343 469.56275416746314 -2.6716936412611587 -0.20362485754229864 TPMYGSQT(ph)PLQDGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPMYGSQTPLQDGSR 15 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 1 TPMYGS(0.01)QT(0.99)PLQDGSR;TPMYGS(0.058)QT(0.942)PLQDGSR 204.9 2.7437e-11 0.0 275520.0 290240.0 309220.0 262845.0 299920.0 323300.0 285660.0 294390.0 415090.0 265860.0 True False 274036.6309331499 299900.4629462149 352755.4882115781 296121.1500498949 338113.03423488606 300951.03196633887 271841.53447282774 316358.8766821303 312796.6314210345 248892.58718580275 1.1010236746367086 1.2049393127258299 1.417300098006695 1.1897547990404196 1.3584696838820622 1.2091602862469888 1.0922042216946108 1.2710658853249124 1.2567535054289354 1.0 17.925163737340988 2.4870102735417046 24.64560834255911 1.1803251364160297 1.2597043460410047 0.13595155390375524 0.11046281999480503 947.6944184464596 2361869.5384743814 0.036538737676607515 0.03228636690165331 306.9094589125534 -2.4870102735417046 0.07937920962497502 TPNTEQQTPLFQVIS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPNTEQQTPLFQVISPQR 18 0 Q8IZD4;Q8IZD4-2 Q8IZD4 DCP1B mRNA-decapping enzyme 1B 1 TPNTEQQTPLFQVIS(1)PQR;TPNTEQQTPLFQVIS(1)PQR 154.19 2.9204e-08 161062000.0 84774.0 84245.0 74720.0 74426.0 82521.0 91875.0 89958.0 77726.0 109196.0 89174.0 True False 84317.58620327694 87049.0438978221 85239.92652211724 83848.32396893029 93029.56020971258 85523.89750048678 85606.387867068 83526.30880463068 82286.1089514352 83482.83897429763 1.0099990278150017 1.0427178204208223 1.0210472903102945 1.0043779655690097 1.114355493329044 1.0244488394413318 1.025436951101102 1.000520703786157 0.9856649577617879 1.0 16.349192042151866 1.802875360597515 2.1693236086394427 0.9925751532429323 1.0375053108625945 0.2880190782959 0.028850071971817187 0.3823335364999208 3.4862289128881008 0.01855742314033871 0.008356954931055724 63.514862259149886 -1.802875360597515 0.044930157619662126 TPPAPKT(ph)PPSSGEPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPAPKTPPSSGEPPK 16 1 A0A0G2JQJ7;A0A0G2JPD5;P10636;P10636-6;P10636-2;I3L170;P10636-3;P10636-7;P10636-4;P10636-8;P10636-5 A0A0G2JQJ7;P10636-7;P10636-8 MAPT Microtubule-associated protein tau;Microtubule-associated protein 1 TPPAPKT(1)PPSSGEPPK 143.57 2.2631e-06 222290000.0 285900.0 180700.0 189250.0 184090.0 167670.0 306610.0 288700.0 250970.0 487620.0 272700.0 True False 284360.7461664761 186714.49026454313 215894.75500951166 207395.77512482688 189021.7806420492 285414.7723823052 274734.4780588999 269698.6557998374 367452.5847732409 255296.05252978412 1.1138470154500377 0.7313645801192327 0.8456642900278464 0.8123736073068777 0.740402284990274 1.1179756582762175 1.0761407210824305 1.0564152995212215 1.439319492534543 1.0 17.961811704936512 2.7231228511986876 22.7192762893008 1.1291558073542811 0.840019895952058 0.4880149186240794 0.1478569029588366 206.00310038623667 303167.061805377 0.04608428643712001 0.04364442516700073 528.5947570494701 -2.7231228511986876 -0.28913591140222317 TPPDTTFPEPTCLSAS(ph)PPNAPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPDTTFPEPTCLSASPPNAPPR 23 0 A1A4S6;H0Y8W5 A1A4S6 ARHGAP10 Rho GTPase-activating protein 10 1 TPPDTTFPEPT(0.003)CLS(0.219)AS(0.778)PPNAPPR 102.57 0.0011708 194110000.0 58151.0 71812.0 66700.0 77895.0 61078.0 72243.0 63542.0 56078.0 62306.0 63086.0 True False 57837.92147718349 74202.21900872927 76090.7802332069 87756.49901324563 68855.92126233106 67249.01145172978 60468.230705987655 60262.825118314126 46951.52115762593 59059.79746935806 0.97931120585355 1.2563913556802753 1.28836845864033 1.4858923120888834 1.1658678866627592 1.1386597031021062 1.0238475798593845 1.0203696541556924 0.7949827661021991 1.0 15.849888788671947 2.2248175734667024 1.345106239445699 0.9297998841029081 1.2534198173463003 0.5133726914966825 0.12901892408879295 0.3600871769188004 1.2649458708003538 0.08163259070529126 0.04674527146727115 167.80989801896462 -2.2248175734667024 0.3236199332433921 TPPGLQHEYAAPADYFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPGLQHEYAAPADYFR 17 0 Q5JRG1;H7BYF2;Q9BVL2-2;Q9BVL2-3;Q9BVL2 Q5JRG1 NUPL1 Nucleoporin p58/p45 0 112.16 0.00047443 280920000.0 140330.0 173300.0 167000.0 141640.0 180640.0 144590.0 165300.0 137100.0 192840.0 174140.0 False True 139574.47887212856 179068.18573793766 190512.14840997843 159571.60947732377 203643.43326283633 134594.83362824933 157303.80749267823 147331.09817969383 145317.16592361248 163026.2361112454 0.8561473429153212 1.0984010304681608 1.1685980916591687 0.978809382364908 1.2491451567579261 0.8256022885568238 0.9648987257813992 0.903726306231829 0.8913728819970507 1.0 17.31474463313691 2.7166635936053076 24.99876399243288 0.9146369195586936 1.0721728904276542 0.33719034987026497 0.10727966264215154 886.0005673913511 1011502.6068923627 0.032988699793298694 0.031124702416409557 520.7911477360155 -2.7166635936053076 0.15753597086896054 TPPPHDMVIY(ph)FGT(ph)AY(ph)VALT(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPPHDMVIYFGTAYVALTR 20 0 Q8N0V5 Q8N0V5 GCNT2 N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase, isoform A 4 T(0.33)PPPHDMVIY(0.738)FGT(0.945)AY(0.988)VALT(1)R 50.029 0.043312 15269000.0 3563.3 4828.0 5401.6 5868.2 4962.0 3629.7 4703.4 4331.7 4784.9 5009.6 True False 3544.115588719849 4988.697061412371 6162.098328451133 6611.113518319895 5593.881287921797 3378.787382394746 4475.878573267167 4654.9534499269075 3605.725509375092 4689.8830390656585 0.7556938113804059 1.063714600099333 1.3139130074507734 1.4096542415345592 1.192754966664635 0.7204417155503061 0.9543689119716029 0.9925521406722096 0.7688305826265216 1.0 12.19533622849783 2.7621441353092018 24.516566822571157 0.9011952019563697 1.1663596856334797 0.3334326126043651 0.1822008715763409 767.0030894735426 797346.8546052293 0.05909271706329555 0.06264127622872812 578.2879399682437 -2.7621441353092018 0.26516448367711 TPPS(ph)EEPVLFQSSLMV ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPSEEPVLFQSSLMV 16 0 Q9C073;Q9C073-2 Q9C073 FAM117A Protein FAM117A 1 T(0.4)PPS(0.6)EEPVLFQSSLMV 73.848 0.035587 6872700.0 11823.0 17487.0 12988.0 13848.0 12893.0 13980.0 14105.0 12155.0 16389.0 16675.0 True False 11759.346281658783 18069.044223885274 14816.597506280248 15601.155380132566 14534.847127201867 13013.595505380214 13422.687263667416 13062.067821839371 12350.150551348703 15610.78722381426 0.7532833618870864 1.1574716870345232 0.9491255818077851 0.9993830007709668 0.9310771403654104 0.833628395467973 0.8598341051751126 0.8367334481321469 0.7911292604455299 1.0 13.930255671205833 2.9249101488221463 3.682813061999693 0.8528829745012761 0.9769772135405778 0.16322513630118973 0.10497796993256552 0.3348985170693975 8.714900717616334 0.030507173010183897 0.03344443360970106 841.2210834249565 -2.9249101488221463 0.12409423903930161 TPPSTTVGSHS(ph)PPETPVLTR ddPTM_BT-474_Trastuzumab_2h_R1 6 TPPSTTVGSHSPPETPVLTR 20 0 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-4;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 TPPSTTVGSHS(1)PPETPVLTR;TPPSTTVGSHS(1)PPETPVLTR;TPPSTTVGS(0.001)HS(0.999)PPETPVLTR;TPPSTTVGSHS(1)PPETPVLTR;TPPSTTVGS(0.001)HS(0.999)PPETPVLTR;TPPSTTVGSHS(1)PPETPVLTR 240.49 6.7808e-30 12670560000.0 2163315.0 2480109.0 2443092.0 2512103.0 2457452.0 2739629.0 2716361.0 2202037.0 2794843.0 2881893.0 True False 2151667.952406893 2562657.928807452 2787058.1178636616 2830134.9822282754 2770393.945740826 2550244.895622979 2584960.2409232846 2366364.182657315 2106091.391627499 2697968.12142727 0.7975142238777175 0.9498473716033987 1.0330211449604754 1.0489875546531984 1.0268445812010711 0.9452464895225882 0.958113708013643 0.8770912316804799 0.7806213034545944 1.0 21.363441871157242 1.7747915785982158 3.507124856748418 0.8706408059192973 0.9738996468707737 0.1522741222677414 0.0832512411039764 0.34417804000893043 8.268045990733208 0.04568420434733659 0.022956404162244447 59.537634907641284 -1.7747915785982158 0.10325884095147642 TPPT(ph)PPSSIVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPTPPSSIVAK 12 0 Q96QT6;Q96QT6-4 Q96QT6 PHF12 PHD finger protein 12 1 T(0.242)PPT(0.758)PPSSIVAK 88.101 0.018188 0.0 316040.0 305010.0 300110.0 269710.0 268620.0 331130.0 347600.0 312810.0 423410.0 366970.0 True False 314338.4757553449 315162.0734675612 342362.8793971172 303855.25834601093 302827.1647645206 308239.76249617623 330785.26003904955 336153.47061699495 319066.2789033222 343549.66042117664 0.9149724536766529 0.9173697714653145 0.996545532827468 0.8844580372266935 0.8814654754519854 0.8972203963709001 0.9628455450473201 0.9784712644014426 0.9287340831953118 1.0 18.39015913145674 2.1782176822542434 7.830243106301249 0.9673021637568703 0.9162208692848405 0.3577373144776642 0.03424791252153177 0.30116801588001785 33.919586772687786 0.013394744440788881 0.00990600034777787 150.73624150162712 -2.1782176822542434 -0.0510812944720298 TPPTAALSAPPPLISTLGGRPVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPPTAALSAPPPLISTLGGRPVSPR 25 1 A0A2R8Y8C6;Q8WXX7-2;Q8WXX7;A0A087WVB5;Q75MD7;A0A2R8Y568;A0A024RDL5;A0A2R8Y522;Q8WXX7-5 A0A2R8Y8C6 AUTS2 Autism susceptibility gene 2 protein 1 TPPT(0.001)AALS(0.001)APPPLIS(0.015)T(0.019)LGGRPVS(0.964)PR 58.429 0.052355999999999986 2489100000.0 262410.0 318500.0 263740.0 329880.0 260510.0 275620.0 219000.0 214780.0 275640.0 258200.0 True False 260997.21371649165 329101.07996268413 300872.2995308249 371642.7741766416 293684.404336257 256567.0381396917 208406.13333875666 230807.97423074138 207712.21538676886 241721.45494385832 1.079743681739423 1.3614889089556423 1.2447066380628264 1.5374836059255002 1.2149703649784316 1.0614160757855828 0.8621747431859559 0.9548510051966563 0.8593040093814247 1.0 17.882986005328437 2.6507521879876093 2.5470903794908137 0.9199533767561502 1.309407841477348 0.6973582900696644 0.11517111059195144 0.15154631160953608 1.9307098961222524 0.03981000460585024 0.037530476813190376 447.45790814580664 -2.6507521879876093 0.3894544647211978 TPQAFVHPSEQDGER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPQAFVHPSEQDGER 15 0 Q9BV44 Q9BV44 THUMPD3 THUMP domain-containing protein 3 0 ; 101.96 0.0015893 4267310000.0 191119.0 257030.0 268920.0 290510.0 301440.0 293440.0 285350.0 265630.0 255039.0 316720.0 False True 190090.036539317 265585.08817208395 306781.59850545786 327288.5362133385 339826.5972251398 273155.1834834599 271546.530357143 285452.6594418092 192188.05579751192 296506.65844236553 0.6410987110303507 0.8957137406872363 1.0346533198177388 1.1038151316151852 1.1461010656905526 0.9212446861005497 0.9158193336488792 0.9627192216909187 0.6481745024112809 1.0 18.17770497716398 -3.1591530153059204 9.968211356334738 0.9995530391078077 0.9392038906144219 0.0 0.1611175345920655 0.0 0.0 0.0 0.03594486873603712 0.0006931815338084926 3.1591530153059204 -0.060349148493385796 TPQEAIMDGTEIAVS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPQEAIMDGTEIAVSPR 17 0 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR 191.44 2.5418e-10 595220000.0 174299.0 214950.0 170848.0 207240.0 203445.0 212392.0 215750.0 168762.0 221000.0 218470.0 True False 173360.59355043928 222104.480809981 194901.9133625627 233476.56275120427 229352.51483701097 197709.84095698927 205313.34825496262 181355.87739607194 166537.51124828006 204527.05755842302 0.8476169149449526 1.0859417989061766 0.9529395068273012 1.1415436448280778 1.1213798192520155 0.9666683876313704 1.0038444336212826 0.88670848522948 0.8142566232377774 1.0 17.6419321891107 1.853044776062982 2.573199052011369 0.8865339769687961 1.0287649678278323 0.24399673802650546 0.09236307439250092 0.33869268338429437 4.0977085358983025 0.05173684442474335 0.025549788314842666 71.29265295583181 -1.853044776062982 0.14223099085903623 TPQMHGTEMANS(ph)PQPPPLS(ph)PHPCDVVDEGVTK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPQMHGTEMANSPQPPPLSPHPCDVVDEGVTK 32 0 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 2 TPQMHGTEMANS(1)PQPPPLS(1)PHPCDVVDEGVTK;TPQMHGTEMANS(1)PQPPPLS(1)PHPCDVVDEGVTK;TPQMHGT(0.002)EMANS(0.998)PQPPPLS(1)PHPCDVVDEGVTK 192.57 1.5847999999999998e-20 912550000.0 565800.0 548800.0 567020.0 544820.0 550750.0 694660.0 638030.0 564880.0 737690.0 673010.0 True False 562753.7956662902 567066.4762433942 646851.4873738083 613794.1561383464 620884.7479489978 646639.7892537491 607166.0513887086 607034.2140025198 555896.1840395638 630057.9256071508 0.8931778695173092 0.9000227648861725 1.0266539965360717 0.9741868663057736 0.9854407391997912 1.0263179986675341 0.9636670323662978 0.9634577859131852 0.8822937724398568 1.0 19.265124946135906 4.316781978607005 9.361377457282028 0.9768315067451577 0.8957273060491816 0.41489459998208056 0.038544999278523576 0.306575503100789 33.71615539000796 0.009404891865776005 0.025823751468513727 20738.721457034666 -4.316781978607005 -0.08110420069597613 TPQPCS(ph)RPAS(ph)PEPELLPEADSK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPQPCSRPASPEPELLPEADSK 22 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 2 T(0.004)PQPCS(0.996)RPAS(1)PEPELLPEADSK;TPQPCS(1)RPAS(1)PEPELLPEADSK;TPQPCS(1)RPAS(1)PEPELLPEADSK 224.84 3.7387999999999993e-26 4005700000.0 3866080.0 2527480.0 2388370.0 2574140.0 2261960.0 3025220.0 2816970.0 2951780.0 4784600.0 3182240.0 True False 3845265.4548418717 2611605.6439060788 2724631.735915813 2900025.8600674807 2550007.1983126914 2816093.6620018794 2680702.3992295815 3172056.8124351287 3605499.4403552995 2979146.718747267 1.2907271168097447 0.8766287432141847 0.9145678253340682 0.973441771705337 0.8559522034500439 0.9452685375583142 0.8998222149853762 1.06475347201731 1.2102456779541944 1.0 21.506467745344235 1.5729292126303946 5.1778547309458265 1.1146483094005863 0.9556797591446117 0.17691751132227995 0.12499672654508714 0.21003455988586175 12.025467482101467 0.06749638887679006 0.03070109660088916 37.40496154817501 -1.5729292126303946 -0.15896855025597467 TPQPCSRPAS(ph)PEPELLPEADSK ddPTM_BT-474_Trastuzumab_2h_R1 4 TPQPCSRPASPEPELLPEADSK 22 1 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 TPQPCS(0.165)RPAS(0.835)PEPELLPEADSK;T(0.004)PQPCS(0.262)RPAS(0.734)PEPELLPEADSK;TPQPCS(0.004)RPAS(0.996)PEPELLPEADSK;TPQPCS(0.276)RPAS(0.724)PEPELLPEADSK 165.02 8.0567e-12 1469150000.0 538940.0 860560.0 771350.0 918720.0 898420.0 954200.0 920010.0 847440.0 1531160.0 999400.0 True False 536038.4069218631 889203.2193804939 879949.3753056102 1035029.8578015155 1012828.4616474593 888238.3999451937 875505.6015205008 910680.2760131275 1153826.1344928353 935617.4363706115 0.572924772545101 0.9503918854161538 0.9405012573504986 1.106253279990739 1.0825241410382003 0.9493606739425382 0.9357516945352229 0.973346840932958 1.2332242748368234 1.0 19.835559222757134 5.037979066426793 1.5517382566480842 1.0241174223172695 0.0518219746864873 0.707711573138103 0.0874681781098554 1.3647027186652958 1.6994140396256694 0.02344980639007762 2.520387187597158 109138.7728836873 -5.037979066426793 -0.9722954476307822 TPQQLWYTHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPQQLWYTHEK 11 0 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 120.14 0.00049246 377110000.0 394080.0 448630.0 456730.0 412930.0 386000.0 468030.0 482510.0 443180.0 570570.0 476630.0 False True 391958.31706640444 463562.378347438 521033.614031674 465206.8956613327 435154.81199875334 435676.1877241133 459169.1479328016 476252.34202244156 429960.6687462948 446211.0653365268 0.8784146058117013 1.0388858868791724 1.1676842071110831 1.0425714012952132 0.9752219203048339 0.9763903712148684 1.029040253823607 1.067325261562615 0.9635813679833867 1.0 18.76736676504305 3.365603562072004 23.51985869629548 1.01002808306566 1.0420989745187224 0.025760019925400113 0.07128821915104694 21.08367850303879 4339.225115002663 0.02066898211679974 0.027986001526422482 2320.617495164985 -3.365603562072004 0.0320708914530623 TPQS(ph)PAPCVLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 TPQSPAPCVLLR 12 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 TPQS(1)PAPCVLLR;T(0.001)PQS(0.999)PAPCVLLR;T(0.001)PQS(0.999)PAPCVLLR 121.53 0.00039294 870120000.0 540130.0 622470.0 554680.0 553380.0 545880.0 572490.0 504039.0 511800.0 584560.0 511080.0 True False 537222.000094085 643188.5376589397 632774.1226350113 623437.8512606709 615394.5823157494 532915.1137965039 479656.707954035 549993.1148677411 440503.02070269 478462.43684239837 1.1228091459790845 1.3442822009260484 1.3225157795269975 1.3030027087915916 1.2861920496351427 1.1138076320336967 1.002496060337606 1.1495011363847238 0.9206637486733115 1.0 18.86804614040538 2.6230227697616737 3.202942773518148 1.04286132688201 1.2847442898731611 0.702617992723973 0.07863715246969953 0.14776375276881104 2.8721397153839043 0.02656407679135991 0.024812981930832086 419.7809922434337 -2.6230227697616737 0.2418829629911512 TPRPAS(ph)PGPSLPAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPRPASPGPSLPAR 14 1 Q8IY33;Q8IY33-5;Q8IY33-3 Q8IY33 MICALL2 MICAL-like protein 2 1 T(0.028)PRPAS(0.968)PGPS(0.004)LPAR;T(0.007)PRPAS(0.965)PGPS(0.028)LPAR;T(0.016)PRPAS(0.971)PGPS(0.012)LPAR;T(0.299)PRPAS(0.689)PGPS(0.012)LPAR 112.24 0.00065944 2073560000.0 1116033.0 1128116.0 1047877.0 1046693.0 1069409.0 1204046.0 1284521.0 1044307.0 1385490.0 1199628.0 True False 1110024.4023309224 1165664.6590994764 1195408.9732898376 1179204.226480148 1205591.8972662552 1120813.1340394146 1222383.8118832575 1122238.4912234966 1044054.5541148392 1123066.713986796 0.9883868772055628 1.0379300219498635 1.0644149260253937 1.0499859107159077 1.0734819955499362 0.9979933694772402 1.0884338362624013 0.9992625346713737 0.9296460674259768 1.0 20.099012200605987 1.5067040352140846 5.727999632969407 0.9642772718157498 1.0433601846490301 0.4775372922448775 0.033223717828833155 0.10815408552610445 7.936581477690288 0.018072633858983278 0.007975199707821012 32.11471226142824 -1.5067040352140846 0.07908291283328028 TPRT(ph)PQLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 T(0.39)PRT(0.61)PQLK;T(0.333)PRT(0.667)PQLK 89.9 0.021951 1385440000.0 867330.0 1376490.0 1335000.0 1801970.0 1573270.0 1340630.0 1495660.0 1249220.0 1784340.0 1497620.0 True False 862660.3916494222 1422305.6375442224 1522956.3959719818 2030099.2172398549 1773616.608998131 1247955.403603567 1423309.2118239496 1342443.1398106264 1344613.315931022 1402040.6094230101 0.6152891619911337 1.0144539523213612 1.0862427134680022 1.4479603540694255 1.2650251334218041 0.8900993275202959 1.0151697477647899 0.9574923370893584 0.9590402067486322 1.0 20.419096706236697 -0.5898653771416497 7.408320747580633 1.0000179870716968 1.0381273818975405 0.0 0.20888022434762038 0.0 0.0 0.21014232815958328 0.049531021751990055 0.257119267906676 0.5898653771416497 0.038109394825843745 TPRT(ph)PRT(ph)PQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPRTPRTPQLK 11 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 T(0.392)PRT(0.609)PRT(0.999)PQLK 84.508 0.018431 263990000.0 222140.0 261590.0 253580.0 352370.0 294160.0 313560.0 382370.0 296690.0 511650.0 381010.0 True False 220944.0229220742 270296.86501550593 289281.85984312807 396980.0058706903 331619.5323770805 291884.3352408452 363873.3023047507 318830.51436129335 385560.7132587445 356693.6156009275 0.6194224209756214 0.757784421120441 0.8110093570241516 1.112943962290695 0.9297041434801006 0.8183054657401225 1.0201284418610281 0.8938497926971707 1.0809296729608804 1.0 18.444325867916582 4.187727301660798 2.159406977224217 0.9641088139423528 0.6531379706815664 0.6399168358963778 0.0883508619606238 0.20400798502766232 1.8406720954338445 0.022809436690767678 0.07963248998110581 15407.327059362578 -4.187727301660798 -0.3109708432607864 TPS(ph)ASNDDQQE ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSASNDDQQE 11 0 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 T(0.041)PS(0.898)AS(0.061)NDDQQE 70.889 0.053008000000000007 5375000.0 7601.5 7199.7 8243.3 6542.7 7403.6 10923.0 9544.7 7825.7 8544.3 8222.4 True False 7560.574368606046 7439.337662189444 9403.88498795195 7371.005149161855 8346.404575424784 10167.918719976256 9082.986396705177 8409.69347209941 6438.671752754205 7697.639392449192 0.9821938886903956 0.9664440334119675 1.2216582913946912 0.9575669596048185 1.084281056814896 1.3209138804229026 1.1799703693076227 1.0925029146401286 0.8364475684675564 1.0 12.910200372164315 4.297218159251789 24.99986853634615 1.098133743499634 0.9743178188125938 0.10131801286576358 0.1303085332989168 164.37788428077948 70054.47310768238 0.03193936846037222 0.08746952064069036 19825.22656800495 -4.297218159251789 -0.12381592468704028 TPS(ph)FELPDASERPPTYCELVPR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPSFELPDASERPPTYCELVPR 22 1 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 T(0.003)PS(0.997)FELPDASERPPTYCELVPR;T(0.219)PS(0.781)FELPDASERPPTYCELVPR;T(0.011)PS(0.989)FELPDASERPPTYCELVPR;T(0.023)PS(0.977)FELPDASERPPTYCELVPR 187.51 1.7053e-17 1129580000.0 192234.0 223818.0 223312.0 224734.0 227183.0 237507.0 203098.0 174634.0 218598.0 220051.0 True False 191199.03350320517 231267.6468291619 254752.38853730008 253185.3013575038 256113.40843086195 221088.70012134005 193273.37383029633 187666.07585348387 164727.45196312922 206007.1567848604 0.9281184036867234 1.1226194780731906 1.2366191180597956 1.229012163018749 1.2432257812204508 1.0732088320224222 0.9381876671019622 0.910968719642441 0.7996200449247458 1.0 17.652334932615577 2.3053863485236414 2.7792015575759286 0.9000345109303189 1.1595306332133024 0.5767638871870326 0.09690234574166773 0.19012254461240533 3.006877939477985 0.04043638501424275 0.030728888481144547 202.016270200075 -2.3053863485236414 0.25949612228298347 TPS(ph)FLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSFLK 6 0 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 T(0.469)PS(0.531)FLK 77.318 0.076298 98891000.0 303650.0 226330.0 179000.0 207200.0 167410.0 225660.0 208210.0 210270.0 300630.0 260740.0 True False 302015.1821386864 233863.25723062572 204201.64410410865 233431.4987553053 188728.6711831897 210060.65534650176 198138.08686055982 225961.41512942532 226543.76473561293 244099.34996925507 1.237263360909097 0.9580658746534204 0.8365513637370536 0.9562970929037976 0.7731633501152729 0.860553931720668 0.8117108336647182 0.9256944566132017 0.928080163933852 1.0 17.897108927698522 4.715525433323211 2.8653336263548304 0.8800055453283913 1.2908089127920952 0.7166732296921685 0.06582742350516567 0.18399331843586786 2.2031971898260174 0.015390961805239781 0.1711423620958841 51942.80915672593 -4.715525433323211 0.41080336746370394 TPS(ph)FLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSFLKK 7 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 T(0.105)PS(0.895)FLKK;T(0.489)PS(0.511)FLKK 69.915 0.06191 2183980000.0 3595270.0 2365670.0 2045880.0 2261230.0 1636780.0 2554580.0 2525240.0 2609680.0 4220300.0 3034290.0 True False 3575913.4657920483 2444409.8958722884 2333922.1208922537 2547501.4861508617 1845214.2310448657 2377987.8974344917 2403084.4938464034 2804427.5732865315 3180263.614122697 2840639.014413636 1.2588412141238534 0.8605140897766845 0.82161869531811 0.8968057796941566 0.6495771626321039 0.8371313233988498 0.8459661652371016 0.9872523608443857 1.1195592252256545 1.0 21.437784076245944 1.569083209631047 3.8132358029034545 1.0592347137324643 0.8687430917774673 0.19567694674370995 0.14577323640600132 0.27458789077427087 9.072877737246861 0.09090920593548922 0.038279824897185434 37.07517499959254 -1.569083209631047 -0.19049162195499691 TPS(ph)GPPARPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSGPPARPSR 11 1 Q2M2I3 Q2M2I3 FAM83E Protein FAM83E 1 T(0.014)PS(0.985)GPPARPS(0.001)R 52.484 0.08723600000000001 245590000.0 209570.0 186970.0 204860.0 249430.0 184900.0 224160.0 216990.0 183460.0 204700.0 231760.0 True False 208441.69840541575 193193.18342424824 233702.5073249591 281007.81242536596 208445.91901183772 208664.34681588184 206493.36471770276 197150.71679100377 154254.42783947033 216968.8783802813 0.9606986032350687 0.8904188695930787 1.0771245584601712 1.2951526252204872 0.960718055824092 0.9617247799481909 0.951718819119219 0.9086589664968344 0.710951860889047 1.0 17.727128594404288 2.1835704604990602 1.3902626026641447 0.8643121690390934 1.0413449675645832 0.25206106801744477 0.12102976629188414 0.6173130770354072 2.2999615618781237 0.07905291611289567 0.04384549861485306 152.60559640194825 -2.1835704604990602 0.1770327985254898 TPS(ph)GSHSGPVPSQGLV ddPTM_BT-474_Trastuzumab_2h_R1 3 TPSGSHSGPVPSQGLV 16 0 Q9Y6V7 Q9Y6V7 DDX49 Probable ATP-dependent RNA helicase DDX49 1 T(0.001)PS(0.978)GS(0.021)HSGPVPSQGLV;T(0.002)PS(0.96)GS(0.033)HS(0.005)GPVPSQGLV;T(0.017)PS(0.562)GS(0.258)HS(0.163)GPVPSQGLV 107.61 0.0011692 736160000.0 407339.0 478038.0 433035.0 486602.0 417194.0 513600.0 496474.0 433066.0 598600.0 506760.0 True False 405145.93208361743 493949.2058499269 494002.56399230607 548205.7633075728 470321.1829974296 478096.0408843544 472457.65590514167 465383.58398458944 451083.05082905147 474418.14294093667 0.8539849036381744 1.0411684569816753 1.0412809276853638 1.1555328805707636 0.9913642426950415 1.0077524394843298 0.9958675968342149 0.9809565483724091 0.9508132383655692 1.0 18.855799657656345 2.247102058567622 1.6591371856274169 0.976318595461729 1.0256809275547276 0.04981227105021235 0.07016255176827015 1.057166475616348 5.792211434231091 0.038286573722995224 0.02376993543992414 176.64528857572168 -2.247102058567622 0.04936233209299856 TPS(ph)PAAEDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSPAAEDAR 10 0 Q92797 Q92797 SYMPK Symplekin 1 T(0.12)PS(0.88)PAAEDAR 84.479 0.015622 153990000.0 178340.0 182500.0 161560.0 174560.0 151690.0 171970.0 151380.0 142210.0 172910.0 171940.0 True False 177379.83725543672 188574.4021764203 184306.24369530595 196659.27810195982 171006.82236292976 160082.11867383652 144057.17107224214 152822.43232774799 130298.6473752946 160966.64199476008 1.1019664388675694 1.1715123073919809 1.144996512391093 1.2217393347148389 1.0623742922368755 0.9945049277914839 0.8949504648107873 0.949404363748377 0.8094760862286995 1.0 17.296402216099448 2.747900573490623 1.9031613354118722 0.9134818514700916 1.159089427667725 0.7957376186489635 0.05563011008636074 0.13647297127764932 0.9783259385017566 0.019567460443810466 0.019371764729628493 559.6294663783266 -2.747900573490623 0.2456075761976334 TPS(ph)PAAEDAREPEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPSPAAEDAREPEAK 15 1 Q92797 Q92797 SYMPK Symplekin 1 T(0.388)PS(0.612)PAAEDAREPEAK;T(0.078)PS(0.922)PAAEDAREPEAK;T(0.001)PS(0.999)PAAEDAREPEAK 246.03 1.0093e-17 2001350000.0 1841160.0 1472990.0 1399160.0 1282450.0 1279670.0 1831180.0 1649590.0 1601870.0 2374800.0 1762780.0 True False 1831247.399132107 1522017.5817087418 1596149.5662832665 1444808.0385074401 1442628.389301669 1704594.8367340558 1569793.0296542447 1721409.6735310443 1789562.3606896624 1650277.8712081122 1.1096600342774474 0.9222795798591934 0.9672004903724364 0.875493796356698 0.8741730192658828 1.032913830133455 0.9512295214290504 1.043102924400761 1.0844006284708798 1.0 20.654277532984352 1.701631014316452 4.661614404448261 1.0493392561661496 0.9563723312538511 0.21806197201895705 0.06904788263425109 0.2292219829893358 11.733443003802108 0.03696236223189488 0.018080251711673444 50.3073005806107 -1.701631014316452 -0.09296692491229852 TPS(ph)PAPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSPAPK 7 0 Q96P11-2;Q63ZY6;Q63ZY6-6;Q3KNT7-3 Q96P11-2 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 1 T(0.05)PS(0.95)PAPK 93.467 0.015643999999999998 2983000000.0 2928500.0 2679000.0 2370900.0 2248500.0 2316200.0 2399000.0 2993600.0 2786800.0 3952000.0 2810500.0 True False 2912733.281386938 2768168.8955103047 2704702.1117677726 2533159.8694561035 2611154.340807028 2233162.776638561 2848788.131337456 2994765.167083662 2978082.5540868905 2631131.4838098944 1.1070268815183961 1.0520830724513923 1.0279615931056958 0.9627644551567878 0.9924073946415102 0.8487461726560801 1.082723592061767 1.1382042993713197 1.1318638283232463 1.0 21.32725191448353 2.0220698947991957 24.999520660635103 1.1066501176821788 0.9974856127260031 0.26156764430657686 0.07229755933641854 269.8218026881483 305637.4020640731 0.027744130280510558 0.02048921330405508 105.21311888478378 -2.0220698947991957 -0.10916450495617569 TPS(ph)PARPALR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSPARPALR 10 1 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 1 T(0.162)PS(0.838)PARPALR 78.324 0.02418 0.0 222650.0 238640.0 206560.0 218720.0 250010.0 259510.0 240580.0 215280.0 247120.0 249620.0 True False 221451.27713874044 246582.98813907368 235641.85254829426 246409.92957413322 281847.2915746327 241570.6845208309 228942.22629515146 231345.28676968988 186220.58723834832 233689.0378895661 0.9476322857873682 1.0551756743318053 1.0083564666805254 1.0544351236987788 1.2060783600291283 1.0337270703942452 0.9796874871098668 0.9899706415797569 0.7968734388232201 1.0 17.834230534816484 1.7346169459316296 1.8495793266507743 0.9063792101930427 1.0533825408379727 0.33087156131908835 0.07917389516019775 0.3604080105187227 2.479246208548364 0.057115502311663985 0.023114650901058496 54.277138802392884 -1.7346169459316296 0.14700333064492999 TPS(ph)PEPVDKDFYSEFGNK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSPEPVDKDFYSEFGNK 18 1 Q9Y2I1;Q9Y2I1-2 Q9Y2I1 NISCH Nischarin 1 T(0.456)PS(0.544)PEPVDKDFYSEFGNK 96.718 0.00093312 347930000.0 362600.0 274490.0 228600.0 222590.0 213120.0 303590.0 314570.0 261070.0 402950.0 282400.0 True False 360647.8018886475 283626.23371729074 260784.8929731801 250769.87117733315 240259.56873879314 282603.53787398955 299353.0473259028 280552.3690865981 303648.3717533685 264376.990225196 1.3641421728171128 1.072809829159861 0.9864129731980225 0.9485313792388954 0.9087763974245275 1.0689415052091644 1.132296146767214 1.0611830055543938 1.1485431144923814 1.0 18.012237093292427 4.731254269249536 3.9106973388894017 1.0343905307877466 1.3931170264527248 0.6567555538039092 0.07158267423471039 0.1562407687053361 4.8700939648302946 0.019089846158936337 0.15847883800528265 53858.50191424318 -4.731254269249536 0.3587264956649783 TPS(ph)PGPVESK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPSPGPVESK 10 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 T(0.001)PS(0.999)PGPVESK;TPS(1)PGPVESK;T(0.006)PS(0.994)PGPVESK 211.37 6.298499999999999e-08 1546720000.0 2102590.0 1784290.0 1609260.0 1460950.0 1467500.0 2316710.0 2345500.0 1943120.0 2886340.0 2346290.0 True False 2091269.8890597073 1843679.0140239168 1835829.8200613281 1645906.1202054224 1654377.4264460355 2156561.29064874 2232039.2043198827 2088125.4813634339 2175040.1819744813 2196547.7634400674 0.9520712109553758 0.8393530269227953 0.8357796040757111 0.7493149694262639 0.7531716150142233 0.981795764491502 1.0161578279655668 0.9506396883868208 0.990208461740025 1.0 21.066806440177075 2.7213554802453137 24.353749893753523 0.9842911987275361 0.8229732749931183 0.6866166168015564 0.05461896166989677 359.11781384331545 508327.85052578803 0.018711659086973708 0.017685669254484514 526.4480001506729 -2.7213554802453137 -0.16131792373441778 TPS(ph)PSPPCSSSPSPSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSPSPPCSSSPSPSGR 17 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 T(0.001)PS(0.998)PS(0.001)PPCSSSPSPSGR;TPS(0.999)PS(0.001)PPCSSSPSPSGR 248.42 9.692e-22 257000000.0 65812.0 78199.0 61524.0 70045.0 66094.0 65332.0 61731.0 72653.0 69058.0 66481.0 True False 65457.67550440058 80801.80644270634 70186.04442380552 78912.68981812432 74510.67913016988 60815.75261498564 58744.83569467949 78074.73578445871 52039.58122979059 62238.12566275236 1.0517295437059573 1.2982686348966286 1.1277017692357942 1.2679155899669257 1.1971870671992662 0.9771462743676748 0.9438721855635267 1.2544519127635632 0.8361367035983011 1.0 15.925510992929958 2.7510193500457465 23.961291658594526 1.0325977408001974 1.1956830092809112 0.3675025088228071 0.11870702925948345 540.6832224077291 1039868.694360976 0.035991233464427716 0.03790858865830081 563.6627693326903 -2.7510193500457465 0.1630852684807138 TPS(ph)PSQPK ddPTM_BT-474_Trastuzumab_2h_R1 7 TPSPSQPK 8 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 T(0.055)PS(0.944)PS(0.002)QPK;T(0.011)PS(0.989)PSQPK;T(0.384)PS(0.613)PS(0.004)QPK;T(0.346)PS(0.654)PSQPK;T(0.396)PS(0.598)PS(0.007)QPK;T(0.465)PS(0.534)PS(0.002)QPK;T(0.01)PS(0.979)PS(0.01)QPK 132.39 0.0010115 6482380000.0 7934481.0 7124116.0 6888924.0 6096826.0 6253574.0 9353701.0 9052203.0 7982179.0 11836343.0 9055361.0 True False 7891762.63589971 7361237.894440932 7858824.619599178 6868683.5464783395 7049929.58106293 8707101.666113757 8614313.358116416 8577849.729663678 8919434.866520368 8477440.108295403 0.9309134048823781 0.868332633484224 0.927028031953786 0.8102308549201247 0.831610662063467 1.0270909089164337 1.0161455873556782 1.011844332733182 1.0521377624116106 1.0 23.015197256210335 2.730200947276478 24.98071006584624 1.0208602845529986 0.8727743484980605 0.8017643943842039 0.03674949003202194 268.0384678692933 800961.8880393098 0.012086100248937857 0.011571835815099614 537.280337512882 -2.730200947276478 -0.14808593605493814 TPS(ph)PSQPKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSPSQPKK 9 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 T(0.005)PS(0.994)PS(0.001)QPKK;T(0.009)PS(0.99)PS(0.001)QPKK 86.911 0.0084637 554270000.0 1148390.0 898060.0 810620.0 831440.0 811550.0 1068500.0 1380690.0 1182510.0 2173670.0 1361460.0 True False 1142207.1958381243 927951.3842112663 924748.2499646511 936700.2187505361 914896.0820662907 994637.1099784515 1313900.7499519996 1270754.9008641099 1637998.1541857412 1274570.4571954515 0.8961506909170187 0.7280502846842368 0.7255371758729253 0.7349144282001007 0.717807381225057 0.7803704411657542 1.0308576842767014 0.9970063982655479 1.285137392710303 1.0 20.281579695871347 2.1105948112089346 1.8177365683727567 1.1051853897680262 0.7510118880319265 0.7452154290457966 0.09009075270832897 0.169590551007219 1.0786356754101165 0.04889978066147897 0.027307538688991204 129.00151514983767 -2.1105948112089346 -0.3541735017360996 TPS(ph)SDVLVFDYTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSSDVLVFDYTK 13 0 Q09028-3;Q09028;Q09028-2;Q09028-4;H0YF10;Q16576;E9PC52;Q16576-2;Q5JP01 Q09028-3;Q16576 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 1 T(0.011)PS(0.98)S(0.009)DVLVFDYTK;T(0.008)PS(0.967)S(0.025)DVLVFDYTK 173.06 2.3414e-05 67925000.0 95669.0 102419.0 99064.0 103783.0 88799.0 116435.0 110187.0 104220.0 150226.0 105322.0 True False 95153.92873382512 105827.95450140709 113011.35012027614 116921.91715888926 100107.02629709148 108386.12250850828 104856.83385478357 111997.42561843678 113204.81522526756 98600.2597892993 0.9650474444708491 1.0733029986690985 1.14615671765746 1.1858175364724377 1.0152815673205324 1.099247839104284 1.0634539308400814 1.1358735347935809 1.1481188332279955 1.0 16.58930382733154 4.694766647208849 3.4904284794963814 1.1041286856169399 0.9542033968648888 0.33111955080668654 0.056498907963860534 0.274957653602893 5.811794367857692 0.01328754583568718 0.10092540779105831 49518.40496619783 -4.694766647208849 -0.14992528875205113 TPS(ph)SEEISPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSSEEISPTK 11 0 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 T(0.052)PS(0.947)S(0.001)EEISPTK;T(0.045)PS(0.91)S(0.045)EEISPTK 250.13 1.518e-16 1547430000.0 1658620.0 1288020.0 1198820.0 1050230.0 1161560.0 1587690.0 1381090.0 1380260.0 1860500.0 1375600.0 True False 1649690.1742100057 1330890.9670754694 1367603.4356697632 1183189.0103174935 1309477.780894485 1477936.7273202487 1314281.4004238544 1483262.0100182653 1402004.7044227365 1287808.0302895892 1.2810062799802857 1.0334544712973968 1.0619621896302591 0.918761944706487 1.0168268484861234 1.147637452600684 1.020556922702456 1.151772605179923 1.088675230661101 1.0 20.29648612054804 2.759932974136867 24.848297204240072 1.09089965281287 1.0527896614898928 0.0005562327681635226 0.09588433388078256 3215.1456294617374 3738040.9371544826 0.02929095968472903 0.031038602812173122 575.3511349600054 -2.759932974136867 -0.03810999132297721 TPS(ph)SEEISPTKFPGLYR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 T(0.025)PS(0.969)S(0.007)EEISPTKFPGLYR;T(0.042)PS(0.776)S(0.181)EEISPTKFPGLYR;T(0.001)PS(0.983)S(0.016)EEISPTKFPGLYR;T(0.041)PS(0.957)S(0.002)EEISPTKFPGLYR 326.07 6.020299999999999e-60 6376210000.0 2343690.0 2244500.0 2172430.0 1886150.0 2296720.0 2819270.0 2614850.0 2432330.0 3724420.0 2779230.0 True False 2331071.8334484394 2319206.8256710996 2478289.2608999363 2124936.3966086837 2589193.678274028 2624380.5007477286 2488359.7158029596 2613842.8157214797 2806586.59567113 2601857.1619814867 0.8959261359578916 0.8913659287525492 0.9525078075433452 0.8166998664101929 0.9951329058748888 1.0086566392249945 0.9563782947669228 1.0046065763774923 1.078685885098215 1.0 21.311110331780586 3.124171977722391 8.644195447636635 1.0046713501695002 0.8940063892513741 0.6592871503494473 0.04156141338100439 0.16250078240074434 11.656236709812518 0.011773865811373239 0.014093740567530749 1330.9813733951892 -3.124171977722391 -0.11066496091812605 TPS(ph)SPHKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSSPHKK 8 1 E7EWN3;Q9C0A6;Q9C0A6-2;Q9C0A6-3;H0Y3R4 E7EWN3 SETD5 SET domain-containing protein 5 1 T(0.052)PS(0.758)S(0.189)PHKK 64.73 0.04049 55400000.0 140540.0 105960.0 106050.0 84509.0 86496.0 84576.0 132510.0 107730.0 200820.0 143700.0 True False 139783.3482554618 109486.81454582742 120980.91819687547 95207.83073509697 97510.75289804176 78729.46019048896 126099.98506264244 115769.35964185563 151330.60185013394 134528.9429722404 1.0390578054590502 0.8138532283600837 0.8992928623682079 0.7077126202853077 0.7248310344500573 0.585223212574669 0.9373446507244375 0.8605535514074786 1.124892521316848 1.0 17.037557066478584 1.4748667688789494 2.1733369169860546 1.0573564648853817 0.7999137771388909 0.3598838774991475 0.1258912628725772 0.3160715484657227 2.881565498520592 0.1061247169866863 0.034714736883812304 29.84466915664867 -1.4748667688789494 -0.2574426877464908 TPS(ph)SQNLLALLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPSSQNLLALLAR 13 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 T(0.01)PS(0.989)S(0.001)QNLLALLAR;T(0.42)PS(0.579)S(0.001)QNLLALLAR;T(0.011)PS(0.945)S(0.044)QNLLALLAR;T(0.035)PS(0.954)S(0.011)QNLLALLAR 186.15 8.4413e-06 696410000.0 508038.0 355602.0 365305.0 357797.0 391173.0 433360.0 312232.0 361525.0 553863.0 446579.0 True False 505302.77985632786 367437.997604052 416736.76871201897 403094.06351424725 440986.56288597954 403402.8432197116 297128.14531793026 388503.83128675254 417370.88503396465 418077.94588448276 1.2086329471106467 0.878874385078368 0.9967920403703037 0.9641600746517837 1.0547950860049111 0.9648986443575143 0.7107003568182197 0.9292617204785499 0.9983087822319299 1.0 18.67341241592392 2.4681324482715827 24.99953893610739 0.8918072593389741 1.0084642100914496 0.17699216932397754 0.10879222507293171 315.100697338177 876346.5318549084 0.036350176253587045 0.03045198750908205 293.8545693637635 -2.4681324482715827 0.11665695075247551 TPSNEHAAVWVPDSEATVCMR ddPTM_BT-474_Trastuzumab_2h_R1 3 TPSNEHAAVWVPDSEATVCMR 21 0 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 0 ;; 198.84 8.340300000000001e-22 1085600000.0 728440.0 953630.0 971860.0 1008420.0 920930.0 1015520.0 960370.0 877970.0 1013050.0 915980.0 False True 724518.159977293 985370.9980684927 1108689.440441446 1136085.8686043688 1038204.9767202362 945319.4926769462 913913.2341303286 943488.5796413254 763397.4016745259 857521.3721900687 0.844898078897915 1.1490920576730375 1.2929000680296818 1.324848459115205 1.2107044913279656 1.102385926851765 1.065761465275481 1.1002508045154613 0.890237172427371 1.0 19.709813102769942 1.7033244596047525 1.2218770540683073 0.9595306057859189 1.1713791324381324 0.24954166842039072 0.1292638318714062 0.6313187985473632 1.7782523370856531 0.1141393918530381 0.04359830694368363 50.50384687981695 -1.7033244596047525 0.21184852665221354 TPSNELYKPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSNELYKPLR 11 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 93.091 0.008671799999999999 484760000.0 459800.0 448570.0 483150.0 461410.0 438570.0 549200.0 548160.0 519620.0 666450.0 502270.0 False True 457324.4878885826 463500.3812837087 551173.3203849174 519824.4586905665 494419.2898919516 511235.096677741 521643.40662544745 558396.6829768956 502212.3274724722 470214.6985850186 0.9725865424130179 0.9857207413517383 1.1721737368983178 1.1055044860461292 1.0514756160957326 1.0872375921385742 1.1093728209585736 1.187535576104355 1.0680489763160141 1.0 18.84296011177797 4.300004297409055 9.356958258385019 1.1073213521169545 0.9781363775155943 0.4431552421099709 0.052258912093286744 0.28180118824521266 39.96659416812498 0.01274423372591085 0.03495191363356698 19952.820584865152 -4.300004297409055 -0.12918497460136014 TPSNGAEGLT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSNGAEGLTPR 12 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 TPSNGAEGLT(1)PR 104.7 0.0026527 0.0 217630.0 245280.0 194130.0 205120.0 217550.0 260910.0 230180.0 230770.0 269070.0 233220.0 True False 216458.30426096608 253443.9965251091 221461.8165917909 231088.17096857255 245253.7029801262 242873.90581607647 219045.3140270095 247991.2292263158 202761.30385327947 218335.69993031266 0.9914013344132645 1.1607996154820404 1.0143179363818011 1.0584076311951283 1.1232872272303847 1.112387511037342 1.0032501056717857 1.1358253794751314 0.9286676613947964 1.0 17.73618851819424 1.2314707963685207 24.99999999766904 0.9643338016643624 1.0774013567180216 0.3684794053004484 0.05785935144149961 170.0253424161918 599514.6425286774 0.04691351753852949 0.012723575688750176 17.04004731630304 -1.2314707963685207 0.11306755505365917 TPSPKEEDEEPES(ph)PPEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSPKEEDEEPESPPEK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 TPSPKEEDEEPES(1)PPEK;TPSPKEEDEEPES(1)PPEK 136.56 5.9899e-06 880420000.0 1345540.0 888560.0 882180.0 819210.0 848700.0 1357230.0 1340080.0 1199330.0 2113900.0 1291160.0 True False 1338295.7621435493 918135.1824541372 1006383.2759539814 922921.9020045062 956776.9143609887 1263407.8846757642 1275255.210797266 1288830.0946743398 1592957.669808775 1208757.0633823108 1.1071668598144666 0.7595696523874174 0.8325769556522362 0.763529686785872 0.7915378063510643 1.045212411119676 1.0550136577724576 1.0662441062126833 1.3178476619209194 1.0 20.20509288945182 2.603684822229722 3.6657771825622216 1.10358968808533 0.8402500121141653 0.5093513300178727 0.12139552579552282 0.19691877939423183 4.75764703120758 0.04048473709906602 0.03763931452627245 401.49932754194174 -2.603684822229722 -0.2633396759711647 TPSPKEEDEEPES(ph)PPEKK ddPTM_BT-474_Trastuzumab_2h_R1 8 TPSPKEEDEEPESPPEKK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK 133.41 6.6454999999999985e-06 45219200000.0 7297570.0 4070950.0 3580330.0 3575160.0 3494880.0 6489350.0 6745490.0 6308700.0 12551340.0 5968180.0 True False 7258280.693956242 4206449.109808763 4084409.3432137575 4027774.8894305835 3939932.252223318 6040756.508786767 6419184.878425807 6779487.228929499 9458230.436339313 5587285.642784038 1.2990709904603301 0.7528609379836126 0.7310185310623522 0.7208822220557924 0.7051603415536358 1.0811612104686978 1.1488914812716198 1.21337759734643 1.692813119113498 1.0 22.413716147427802 2.2604542446515135 1.670738991270562 1.3152939539365995 0.8277038064332759 0.4242882335398329 0.2313979593011596 0.33723835454798623 1.8805886785975816 0.11991152113152385 0.07562705505398 182.16051467089247 -2.2604542446515135 -0.48759014750332363 TPSRHS(ph)CSGS(ph)SPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 TPSRHS(1)CS(0.059)GS(0.671)S(0.27)PPR;TPS(0.001)RHS(0.998)CS(0.026)GS(0.857)S(0.119)PPR 128.72 4.1018e-05 1647750000.0 649250.0 1033390.0 1117660.0 1267120.0 1286360.0 1224950.0 1208260.0 1076890.0 1060410.0 1153570.0 True False 645754.5101384557 1067785.7614525524 1275016.8131251293 1427537.2620792594 1450170.3211469327 1140272.0897221388 1149811.8477985673 1157253.0001366173 799086.1642660118 1079948.1749790339 0.5979495360052739 0.9887379655725447 1.1806277770226172 1.321857191996249 1.342814733841359 1.0558581570308 1.0646916902479044 1.071581976754657 0.7399301029251012 1.0 20.0425306506993 -1.7873407621123252 3.214597524145555 0.9870038581476896 1.062723213808708 0.0 0.22029898473961063 0.025052491408358895 0.001657328786351667 0.26043189230032093 0.05127928589522725 0.01631771102766901 1.7873407621123252 0.07571935566101828 TPSS(ph)PCPASK ddPTM_BT-474_Trastuzumab_2h_R1 4 TPSSPCPASK 10 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 T(0.004)PS(0.045)S(0.951)PCPASK;T(0.001)PS(0.019)S(0.98)PCPASK;TPS(0.016)S(0.984)PCPASK;T(0.002)PS(0.012)S(0.986)PCPASK 117.42 0.0010064 1076270000.0 1432570.0 1365180.0 1251370.0 1117450.0 1173550.0 1897100.0 1852250.0 1622170.0 2438400.0 1979880.0 True False 1424857.2022934903 1410619.191031262 1427552.0188969749 1258919.0554252712 1322994.6363241891 1765957.9422930465 1762649.5912178638 1743224.5626123545 1837488.992885998 1853522.3633394535 0.7687294367068516 0.7610478400108311 0.770183326153661 0.6792035965280194 0.7137732257735356 0.9527578286734864 0.9509729292082206 0.9404928675754537 0.991349783109944 1.0 20.821838091162814 2.7334526107400454 24.692419200082334 0.960245112534013 0.7382914986034714 0.9311652353178721 0.031038799231209377 92.06149750282913 445029.4853408861 0.010515561660807037 0.010194252627991509 541.3181772094013 -2.7334526107400454 -0.22195361393054158 TPSS(ph)PLQSCTPSLSPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 TPS(0.003)S(0.997)PLQSCTPSLSPR;TPS(0.004)S(0.996)PLQSCTPSLSPR 187.93 1.3223e-09 621300000.0 358290.0 382010.0 355330.0 370020.0 374340.0 369730.0 375700.0 313070.0 406530.0 375150.0 True False 356361.00644976133 394724.9719200781 405357.37541627313 416864.4940609946 422009.9801129879 344171.43535080313 357525.9556866255 336432.8731372481 306346.12872291094 351207.60581792635 1.0146733742278538 1.1239078123060697 1.1541816541023864 1.1869460887390526 1.2015969276353515 0.9799657799245642 1.0179903560288348 0.9579316266620439 0.8722650752664151 1.0 18.421964562923375 2.6757337146906814 7.149624528799261 0.9662080620290721 1.1392271416083832 0.6751471184072635 0.05917333911150224 0.16567128070564013 16.380329008231314 0.02010922523655245 0.018981393429056036 473.95129548214805 -2.6757337146906814 0.17301907957931117 TPSSPLQSCTPSLS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 TPSSPLQSCTPS(0.002)LS(0.998)PR 84.94 0.007676 71381000.0 43526.0 47684.0 41606.0 46904.0 39106.0 38918.0 46040.0 30412.0 51510.0 48323.0 True False 43291.660852193236 49271.13311441329 47463.76315416505 52842.04159082453 44085.91730057834 36227.69026311781 43812.869310120426 32681.497869006893 38816.05069863757 45238.98476859825 0.9569547387863417 1.089129947686489 1.0491783446721175 1.16806426716065 0.974511641366004 0.8008068803582998 0.9684759623635998 0.7224189056446755 0.8580221438917206 1.0 15.465278932976581 2.9627176984657204 4.97743833643937 0.8521802885807508 1.067551359699881 0.5166593250989326 0.08848277096722283 0.14038823456674632 8.588648817144568 0.026233191338721092 0.028890369524576163 917.7358528641696 -2.9627176984657204 0.21537107111913012 TPST(ph)PQSQHFYQMPTPDPLVPSKPMEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPSTPQSQHFYQMPTPDPLVPSKPMEDR 28 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 T(0.174)PS(0.174)T(0.649)PQS(0.002)QHFYQMPTPDPLVPSKPMEDR 108.24 0.0011429 176360000.0 84018.0 79809.0 83111.0 78839.0 104280.0 115310.0 100860.0 98076.0 117120.0 106840.0 True False 83565.65642327725 82465.39431944063 94812.3063862378 88820.00931645515 117559.43988401556 107338.89111054315 95981.01647738373 105394.92913983692 88257.34532759526 100021.37972967395 0.8354779413074355 0.8244776720968899 0.9479204010431108 0.8880102389759814 1.175343113659714 1.073159472511238 0.9596050038180833 1.0537240080539378 0.8823848017906458 1.0 16.609948885768993 3.8321689715271336 1.6932880165003887 1.0221189081254662 0.8334203295092176 0.42763166888622905 0.08099889359069812 0.3455599232010912 1.9017877606350648 0.02350298884489768 0.05911469634176959 6794.679426851479 -3.8321689715271336 -0.1886985786162486 TPT(ph)PEPAEVETR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPTPEPAEVETR 12 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 T(0.413)PT(0.587)PEPAEVETR;T(0.062)PT(0.938)PEPAEVETR 202.61 1.5064e-06 3050480000.0 938590.0 963960.0 1067740.0 972040.0 986360.0 1020440.0 995450.0 1000610.0 942650.0 1070090.0 True False 933536.7357271516 996044.8258738738 1218068.5110375485 1095100.1643344944 1111967.0993862445 949899.3846573794 947296.2805117148 1075280.599194628 710346.5383628567 1001795.94004986 0.9318631653475147 0.9942591959639006 1.2158848547309191 1.0931369558954198 1.1099736532480868 0.9481964806226927 0.9455980431150152 1.0733529216949218 0.7090730856101316 1.0 19.934157239274988 2.72888493531017 24.056831520089506 0.9516911527955121 1.0743685824798683 0.2579332890779593 0.11154386369877227 642.9364716670306 1598541.4739186221 0.03628941492141014 0.034660459917878715 535.6547190076463 -2.72888493531017 0.12267742968435624 TPTGNAPSSES(ph)DIDISSPNVSHDESIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPTGNAPSSESDIDISSPNVSHDESIAK 28 0 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 TPTGNAPS(0.003)S(0.127)ES(0.87)DIDISSPNVSHDESIAK;TPTGNAPS(0.047)S(0.033)ES(0.92)DIDISSPNVSHDESIAK 182.92 8.000599999999999e-18 334580000.0 113420.0 98260.0 92840.0 82871.0 91511.0 120413.0 115743.0 117578.0 142533.0 119823.0 True False 112809.35932214666 101530.52470057557 105911.06502025382 93362.46010304493 103164.38342180797 112089.13273171298 110144.06890880242 126352.2674089862 107407.65199434893 112175.79355436847 1.005647972238067 0.9051019073144917 0.944152581090694 0.8322870482551545 0.9196670703453244 0.9992274552297818 0.9818880296613963 1.1263772994638703 0.9574940242548089 1.0 16.775401864405183 2.4913123142579616 2.145427853220448 1.037838562194129 0.9171514118196652 0.3624590860091276 0.05871567511728084 0.2850176388630476 2.650172096121623 0.02344827543157242 0.019539999602760528 309.9647547940831 -2.4913123142579616 -0.12068715037446387 TPTGS(ph)PATEVSAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPTGSPATEVSAK 13 0 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F6SRV7;Q8NHM5-5;F8WBN2 Q8NHM5-4;F8WBN2 KDM2B Lysine-specific demethylase 2B 1 T(0.001)PT(0.001)GS(0.993)PAT(0.005)EVSAK;TPTGS(1)PATEVSAK;TPTGS(0.986)PAT(0.014)EVSAK 191.19 3.9592e-06 1150560000.0 1186500.0 1538530.0 1426340.0 1307080.0 1471290.0 1878780.0 1855890.0 1439820.0 1834960.0 1748000.0 True False 1180112.0158325438 1589739.0409889738 1627156.2740304722 1472556.193982068 1658650.060480948 1748904.3607724058 1766113.5105117168 1547266.6796578162 1382758.6952042703 1636441.143461909 0.7211454078550018 0.971461178020655 0.9943261818681761 0.8998528299446563 1.0135714731371614 1.0687242665340104 1.0792404710477301 0.9455070754237802 0.8449791798066317 1.0 20.64213028440921 4.738455146132035 5.143093924624414 0.9834535969746963 0.7093001427124322 0.5703554809707535 0.06734273225393568 0.12099098839916769 10.672754015813725 0.016913923274686642 0.1178048491855134 54758.95430766663 -4.738455146132035 -0.274153454262264 TPTGSPAT(ph)EVSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TPTGSPATEVSAK 13 0 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F6SRV7;Q8NHM5-5;F8WBN2 Q8NHM5-4;F8WBN2 KDM2B Lysine-specific demethylase 2B 1 TPT(0.001)GS(0.212)PAT(0.787)EVSAK 139.74 0.00043617 452900000.0 288620.0 443170.0 377630.0 355910.0 394890.0 473480.0 518300.0 378410.0 470110.0 441170.0 True False 287066.1019886968 457920.6455480775 430797.0215811985 400968.1695077259 445176.9008035953 440749.4420520328 493227.84890172473 406648.8757270453 354257.68965126225 413014.15289536014 0.6950514890985513 1.1087287017597547 1.0430563179522416 0.9708339694821884 1.077873234325662 1.0671533625718137 1.194215368756836 0.9845882347525086 0.8577374096451745 1.0 18.655831694246437 4.745748532729361 24.864620414235326 1.038949128341325 0.6950513161835999 0.5844692072485186 0.0855883995607381 568.8809741158352 1967834.8423125406 0.020597395857805376 0.21079536946507213 55686.32179570864 -4.745748532729361 -0.3438978121577251 TPTHQPPKPGS(ph)PGRPACPLSNLLLQSYEER ddPTM_BT-474_Trastuzumab_2h_R1 3 TPTHQPPKPGSPGRPACPLSNLLLQSYEER 30 2 Q96F63 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 TPTHQPPKPGS(1)PGRPACPLSNLLLQSYEER;TPTHQPPKPGS(1)PGRPACPLSNLLLQSYEER;TPTHQPPKPGS(0.999)PGRPACPLSNLLLQSYEER 254.16 2.3144999999999997e-58 5768940000.0 2102850.0 2082909.0 2082590.0 2053454.0 2316014.0 2631958.0 2440486.0 2643592.0 3036028.0 2653568.0 True False 2091528.489248601 2152237.366919919 2375800.5698032137 2313421.065854615 2610944.6548095355 2450016.938422712 2322430.3686181237 2840870.2589281755 2287839.5800909186 2484215.0184061374 0.8419273185903681 0.8663651700732354 0.9563586695194839 0.9312483213868086 1.0510139563058867 0.9862338486282212 0.9348749409413787 1.1435685872114512 0.9209507080263879 1.0 21.244358619115694 4.232029964452591 0.7787564025047082 1.0198046345046283 0.7914065247053844 0.44928854226206294 0.062029900805265964 1.2002732707905373 0.8898302795659268 0.024431597578439764 0.21090994878389108 17062.001054158947 -4.232029964452591 -0.2283981097992439 TPTQTNGSNVPFKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPTQTNGSNVPFKPR 15 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 0 124.78 8.620299999999999e-05 251430000.0 155680.0 184100.0 157300.0 163510.0 151590.0 188120.0 165100.0 172410.0 187710.0 178370.0 False True 154841.83617767386 190227.65720919988 179446.47272388983 184210.3492349419 170894.08795567614 175115.7071868472 157113.4822567522 185276.10968024057 141451.38568513418 166986.27388976017 0.9272728384842952 1.1391813996327809 1.074618102098353 1.103146653577962 1.0234020076913375 1.048683242686485 0.9408766277429143 1.109528977229319 0.8470839092949435 1.0 17.349369993872497 1.9074968079398336 0.8301923812494828 0.9660988278293546 1.0629481626172894 0.16256635787818108 0.08086741409486474 1.1247647794702058 1.4465496193651268 0.06688956978410134 0.03202630796645879 80.81589891300939 -1.9074968079398336 0.09684933478793478 TPTS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 7 TPTSPLK 7 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 TPT(0.005)S(0.994)PLK;T(0.001)PT(0.021)S(0.979)PLK;T(0.01)PT(0.028)S(0.962)PLK;TPT(0.002)S(0.998)PLK;T(0.008)PT(0.155)S(0.837)PLK;TPT(0.024)S(0.976)PLK;T(0.001)PT(0.022)S(0.977)PLK 143.91 0.0025069000000000003 28690550000.0 27370800.0 25114000.0 24268400.0 21824300.0 21741000.0 31857300.0 31225300.0 29308700.0 44665500.0 29109700.0 True False 27223438.653981764 25949904.308266412 27685179.77528575 24587254.142304078 24509587.48099711 29655079.83501782 29714812.94677023 31495864.020563006 33658286.01203641 27251894.02393195 0.9989558388152692 0.9522238815943522 1.0158992894575805 0.9022218463315669 0.8993718917104766 1.0881841757118038 1.0903760641618305 1.1557311940558739 1.2350806143044049 1.0 24.699853165806662 2.573317662774474 3.9500752275746365 1.130702577545833 0.9546947037838255 0.6030536562980979 0.06494422423618841 0.1535203855148585 4.304814691554104 0.02184525108517579 0.02015923519284177 374.38432990554713 -2.573317662774474 -0.17600787376200755 TPTSS(ph)PASSPLVAK ddPTM_BT-474_Trastuzumab_2h_R1 4 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 TPT(0.001)S(0.007)S(0.833)PAS(0.144)S(0.015)PLVAK;TPTS(0.014)S(0.986)PASSPLVAK;TPTSS(1)PASSPLVAK;TPTS(0.001)S(0.999)PASSPLVAK 222.45 4.0781e-12 1026600000.0 2118160.0 2202720.0 1995100.0 1760250.0 1767590.0 2373540.0 2185040.0 2104520.0 3033700.0 2480480.0 True False 2106756.061909702 2276036.203627642 2275992.738279929 1983097.4695175022 1992682.109173254 2209462.766512172 2079341.2675366113 2261569.9689360266 2286085.284497319 2322173.642754231 0.9072345078428194 0.9801317876160769 0.980113070089139 0.8539832823033143 0.8581107254364574 0.9514632006121739 0.8954288470307471 0.973902178242655 0.9844592335420234 1.0 21.147044424462187 1.6050876223908381 4.791979040315248 0.9883017414452897 0.9194645186199865 0.36234836704314033 0.04166072615309265 0.19105911821761964 9.62893575408945 0.025384109581310852 0.011645838397603558 40.27982939103933 -1.6050876223908381 -0.06883722282530325 TPTVPDS(ph)PGYMGPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPTVPDSPGYMGPTR 15 0 A0A087WXN9;Q765P7 A0A087WXN9 MTSS1L MTSS1-like protein 1 TPTVPDS(1)PGYMGPTR;TPTVPDS(1)PGYMGPTR 136.39 2.4257e-05 536970000.0 257442.0 348580.0 345010.0 366340.0 322770.0 327990.0 317630.0 278520.0 322720.0 307640.0 True False 256055.9608764949 360182.27457894 393584.40911932115 412718.60643831384 363872.84629232535 305316.82330541185 302265.02343556774 299304.5766959031 243189.98022644772 288006.15181614517 0.8890642066560913 1.2506061843042506 1.3665833407981303 1.433020106812793 1.2634203957025587 1.0601052143508285 1.049508913366979 1.039229803976446 0.8443916169599502 1.0 18.135740102423348 2.6113182975946656 2.9649562793945696 0.9971011763898447 1.2593105910070095 0.4168331597541418 0.14392028078263366 0.27803318881591355 4.6968340438971525 0.05280864351443133 0.04895030031288665 408.6187562820934 -2.6113182975946656 0.26220941461716474 TPVAHTTSATSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPVAHTTSATSSR 13 0 A0A0G2JN42;A0A0G2JNJ8;Q6W4X9 A0A0G2JN42 MUC6 Mucin-6 0 80.469 0.017706 123070000.0 55615.0 66915.0 68923.0 82670.0 82051.0 85268.0 81469.0 76780.0 77101.0 70751.0 False True 55315.57501940736 69142.22532402838 78626.75931054464 93136.01352365398 92499.70849562102 79373.62385928181 77528.03322819725 82509.71348094003 58100.49165046901 66235.61060702149 0.835133465404235 1.0438829609989095 1.1870768396329934 1.4061320288301358 1.3965253380756986 1.19835271588585 1.1704886920749347 1.2457002015195942 0.8771790750927253 1.0 16.015319449045727 4.539109474168701 2.3617245670810725 1.2106026132309002 0.8183355437216789 0.3276080695533512 0.15231958596406617 0.4138834518409936 3.6866122697026094 0.038832350662590644 0.2771123224048107 34602.659099824545 -4.539109474168701 -0.3922670695092213 TPVEPEVAIHR ddPTM_BT-474_Trastuzumab_2h_R1 8 TPVEPEVAIHR 11 0 P60866;P60866-2;E5RJX2;E5RIP1 P60866 RPS20 40S ribosomal protein S20 0 ;;;;;;; 195.51 6.364200000000001e-08 20220090000.0 8012790.0 9459040.0 8314940.0 8644840.0 8387360.0 9025070.0 8780380.0 8027140.0 9727670.0 8747860.0 False True 7969650.028944668 9773878.428289577 9485611.277245902 9739275.857624583 9455440.580222435 8401188.153629601 8355639.475091121 8626165.947790997 7330416.072599794 8189564.08538025 0.9731470376026283 1.1934552714151898 1.158255943583043 1.1892300684246222 1.1545719017086622 1.0258406999497245 1.0202789047108556 1.0533119782517064 0.8950923390032225 1.0 22.965355231373948 2.6728087768824316 4.455916632164088 1.0060017479547043 1.1416304945916098 0.48086646968341706 0.06979532943235303 0.19818705015037488 7.8429058576723065 0.02268442233752498 0.021569453857355685 470.7699971954852 -2.6728087768824316 0.1356287466369055 TPVIDADKPVSSQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVIDADKPVSSQLR 15 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 120.63 0.00010946 849600000.0 895140.0 806890.0 782960.0 746180.0 753490.0 955140.0 897720.0 837670.0 1197470.0 999760.0 False True 890320.6656994045 833746.8458746945 893193.9623896801 840646.3114924402 849442.4852148718 889113.4199577147 854293.8539765709 900181.1890020714 902369.5637759184 935954.4608624021 0.9512435731959118 0.8907985171698076 0.9543134839772847 0.8981700997694443 0.907568178511787 0.9499537179816128 0.91275151698023 0.9617788328853428 0.9641169538787837 1.0 19.83607881120462 1.2658532085598393 0.9885410062581875 0.9988393630133777 0.9210781844991229 0.5577022994498402 0.02209992341784691 0.3267358900018404 0.672207039102441 0.01883776922746634 0.006565601799123608 18.44391909749163 -1.2658532085598393 -0.07776117851425479 TPVLLHDHDER ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVLLHDHDER 11 0 A0A1B0GW23;Q03154;A0A1B0GU86;Q03154-2;Q03154-3;Q03154-4;C9JMV9 A0A1B0GW23 ACY1;ABHD14A-ACY1 Aminoacylase-1 0 ; 124.21 0.00020468 1123520000.0 500410.0 602320.0 600980.0 540800.0 542810.0 611200.0 546250.0 258418.0 605440.0 467280.0 False True 497715.84816077765 622367.8570898708 685592.7601881976 609265.2245505267 611933.6360130646 568949.1826100416 519825.800622356 277702.4633800156 456237.42448035604 437457.7903414646 1.137745993212917 1.4226923621684089 1.5672203703425815 1.3927405980699419 1.3988404127753906 1.3005807535532496 1.1882879036548823 0.6348097336733917 1.0429290197900754 1.0 18.738784294575336 1.9820487964574134 4.0935587989925315 0.8586588875089833 1.378542921552119 0.6814717971888118 0.14484236092400068 0.11008112152996263 4.12793002692297 0.06486813400150297 0.04007719162675981 95.95084339038222 -1.9820487964574134 0.5198840340431357 TPVLPAGPPTTDPWALNS(ph)PHHK ddPTM_BT-474_Trastuzumab_2h_R1 4 TPVLPAGPPTTDPWALNSPHHK 22 0 Q9H201 Q9H201 EPN3 Epsin-3 1 TPVLPAGPPT(0.004)T(0.026)DPWALNS(0.97)PHHK;TPVLPAGPPTTDPWALNS(1)PHHK;TPVLPAGPPTTDPWALNS(1)PHHK;TPVLPAGPPTT(0.001)DPWALNS(0.999)PHHK 216.81 8.4559e-26 4091140000.0 3311700.0 2916960.0 2919680.0 2813720.0 2696350.0 3305520.0 3037590.0 1848350.0 3440270.0 2843650.0 True False 3293870.1751644607 3014049.2502604453 3330745.565686499 3169936.6635027854 3039714.1899814433 3077017.1827571085 2890650.166979339 1986283.262731122 2592461.555756199 2662165.822428747 1.237289633656027 1.132179379987182 1.2511412841472787 1.1907359927755323 1.1418200039876747 1.1558322764244207 1.0858264885776878 0.7461155296926606 0.9738167074021875 1.0 21.34416900674407 1.9481708456864337 5.3937740600806094 0.883858459452165 1.1797275731793502 0.7402062425782134 0.07323685843416682 0.0915839772089409 5.926091743689914 0.03115095628580113 0.019097413046753872 88.75050760953151 -1.9481708456864337 0.29586911372718516 TPVQYSQQQNS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 3 TPVQYSQQQNSPQK 14 0 P46013 P46013 MKI67 Antigen KI-67 1 TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK 257.11 2.5844e-24 355910000.0 175864.0 170289.0 202736.0 157684.0 114215.0 260960.0 283739.0 208736.0 326666.0 237796.0 True False 174917.16776432737 175956.96642312573 231279.46658709814 177646.77823229533 128759.60324465708 242920.44943376395 270013.46058176074 224312.94025993094 246163.54140013896 222619.65569260195 0.7857220298905537 0.7903927704662832 1.0388995790490927 0.7979833482340565 0.5783838037304807 1.0911904821611698 1.2128913762880003 1.0076061772805323 1.1057583421117447 1.0 17.76422145219458 2.6959923698028936 24.225707414756073 1.0883719076898306 0.8111900122208688 0.5955654358674749 0.11724076853357895 246.63673230420486 140361.2620831544 0.038915270710572415 0.03668999179708669 496.5835968080332 -2.6959923698028936 -0.27718189546896177 TPVS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 6 TPVSPVK 7 0 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 T(0.01)PVS(0.99)PVK;T(0.11)PVS(0.89)PVK;T(0.009)PVS(0.991)PVK;T(0.045)PVS(0.955)PVK;T(0.008)PVS(0.992)PVK;TPVS(1)PVK 103.19 0.0088439 16127030000.0 12736600.0 10762770.0 10021020.0 8549790.0 8756140.0 11540100.0 11845200.0 10656330.0 13668400.0 10902630.0 True False 12668027.56076929 11121002.29321813 11431892.5117327 9632192.537370285 9871182.52729214 10742360.049473409 11272202.42294174 11451559.456347303 10300005.96717642 10206814.819188852 1.2411342603133495 1.089566381895222 1.1200254647748382 0.9437020959037804 0.9671168432226553 1.0524693785251917 1.1043800267395816 1.1219523092373858 1.0091302869346046 1.0 23.283029387284106 4.875247029182125 1.4782566833148238 1.0446265709178786 1.3654924073114283 0.5267043669592889 0.05806955018645228 1.5043626641906807 2.363816881518984 0.017498749515020773 0.77610767833671 75032.08747757087 -4.875247029182125 0.3208658363935497 TPVS(ph)PVKFS(ph)PGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 4 TPVSPVKFSPGDFWGR 16 1 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 2 T(0.059)PVS(0.941)PVKFS(1)PGDFWGR;T(0.047)PVS(0.953)PVKFS(1)PGDFWGR;T(0.058)PVS(0.942)PVKFS(1)PGDFWGR;T(0.018)PVS(0.982)PVKFS(1)PGDFWGR 187.76 7.3269e-10 1918320000.0 2247180.0 1863840.0 1695200.0 1813500.0 1959880.0 2814360.0 2756270.0 2481280.0 4019640.0 2875970.0 True False 2235081.432565168 1925876.7876849282 1933869.4250574566 2043088.9140576583 2209459.100881132 2619809.917490831 2622938.6901260996 2666445.71328454 3029053.582416456 2692423.132358205 0.8301375091096969 0.7152949937694659 0.7182635603652847 0.7588290597801334 0.8206210510997723 0.9730305337245508 0.9741925994480495 0.990351658043098 1.1250288062127172 1.0 21.36047372629472 2.7478535603121514 1.4843012963394964 1.0246569980113818 0.745346268506259 0.8720512493284711 0.0475896186095872 0.13139968877745695 0.5846084158611056 0.019898286821549052 0.019241022036414045 559.5688887355575 -2.7478535603121514 -0.2793107295051228 TPVS(ph)PVKFSPGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 5 TPVSPVKFSPGDFWGR 16 1 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 T(0.04)PVS(0.96)PVKFSPGDFWGR;T(0.032)PVS(0.968)PVKFSPGDFWGR;T(0.003)PVS(0.997)PVKFSPGDFWGR;TPVS(1)PVKFSPGDFWGR;T(0.004)PVS(0.996)PVKFSPGDFWGR 143.04 8.7829e-07 11631718000.0 2402400.0 2672098.0 2435545.0 2651372.0 2618965.0 2952574.0 3142790.0 2551253.0 3781450.0 2978430.0 True False 2389465.745331732 2761037.16661265 2778448.565863358 2987035.423348706 2952474.668928275 2748469.5089915954 2990761.241076312 2741640.4538602377 2849562.316333973 2788344.0474377875 0.8569479607537724 0.99020677493144 0.996451126042526 1.0712578406863014 1.0588631168529246 0.9856995629779499 1.0725940523101967 0.9832504193230869 1.0219550628812966 1.0 21.410977152377345 4.881667124373851 1.707489901537732 1.0257651582995269 0.7506160683830541 0.7125643239048364 0.03181441035359058 0.7379445851590963 1.5876482463275412 0.008157214942890572 0.37039444725308396 76149.51197289307 -4.881667124373851 -0.2751490899164728 TPVSGSLKS(ph)PVPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVSGSLKSPVPR 13 1 Q8NI27;A0A0C4DG98;Q8NI27-2;H0Y7U4;H7C477 Q8NI27 THOC2 THO complex subunit 2 1 TPVSGS(0.001)LKS(0.999)PVPR;TPVSGS(0.002)LKS(0.998)PVPR 132.4 7.2205e-05 1218210000.0 2089100.0 2111500.0 1809610.0 1979810.0 2023210.0 2273600.0 2176500.0 2168100.0 3035200.0 2380100.0 True False 2077852.517720832 2181780.0010712934 2064387.35858791 2230453.7430055058 2280853.800994811 2116431.383478713 2071214.3799625766 2329894.6313887257 2287215.6295962897 2228199.9802938704 0.932525148594064 0.9791670498011337 0.9264820827777066 1.001011472368534 1.0236306530682207 0.9498390639064558 0.9295460004848445 1.0456398222754868 1.0264857956307116 1.0 21.087447289269168 5.0619316873003015 0.25332785765721966 1.0173723481763943 0.8671687592458014 0.25285267591399463 0.036435422419745345 17.26054878776851 0.825576884771294 0.05399035883376615 0.8360747126294268 115327.18387321456 -5.0619316873003015 -0.15020358893059294 TPVSITEHPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVSITEHPK 10 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 91.658 0.0099988 524340000.0 372030.0 481130.0 449350.0 381820.0 459030.0 470510.0 474670.0 420910.0 552120.0 524700.0 False True 370027.0318164192 497144.12120077363 512614.5741797832 430158.37285111373 517484.7496160295 437984.75116140465 451708.39868451 452320.4415376729 416057.42402896064 491213.19678172923 0.7532921229330101 1.0120740331446751 1.0435684088665957 0.8757060593432199 1.0534829947697315 0.8916388118864472 0.9195770831157591 0.9208230652212336 0.8469996872128741 1.0 18.905989794664055 -0.005409065766723314 8.087320813981497 0.9999999943796688 0.9308161226440996 0.05793325476399569 0.08814829037105265 10893467.818729818 1346980.932615719 0.0800818936914141 0.01942271214878398 0.9876224062411594 0.005409065766723314 -0.06918387173556917 TPVSPVKFS(ph)PGDFWGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-5;P23443;P23443-3;P23443-2 P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 TPVSPVKFS(1)PGDFWGR;TPVSPVKFS(1)PGDFWGR 134.32 1.7522e-05 1049680000.0 1084540.0 995440.0 937340.0 994920.0 980980.0 1353000.0 1405390.0 1360110.0 1828510.0 1372670.0 True False 1078700.957143722 1028572.6186438135 1069309.324494666 1120876.7699885545 1105901.988276003 1259470.2946194157 1337405.9165888384 1461608.3146986365 1377898.2112786996 1285065.0253980865 0.8394135205800678 0.800405114383362 0.832105226864622 0.872233504013799 0.8605805670677383 0.9800829294449578 1.0407301499583943 1.1373808218349577 1.0722400688259766 1.0 20.29340993220312 2.558183661890166 1.5751272570559764 1.086440581391411 0.8313109153636681 0.8927078376407521 0.036448701823477744 0.1049428875800256 0.5259362456255057 0.016176682067880768 0.013393715231162675 361.5627341556233 -2.558183661890166 -0.255129666027743 TPVVESARPNS(ph)TSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TPVVESARPNSTSSR 15 1 A0A2R8Y8C6;Q8WXX7-2;Q8WXX7;A0A087WVB5;Q75MD7;A0A2R8Y568;A0A024RDL5;A0A2R8Y522;Q8WXX7-5 A0A2R8Y8C6 AUTS2 Autism susceptibility gene 2 protein 1 TPVVES(0.002)ARPNS(0.657)T(0.32)S(0.005)S(0.016)R 104.16 0.0033981000000000003 0.0 177290.0 157220.0 155270.0 146750.0 148100.0 182730.0 233530.0 125600.0 208440.0 195360.0 True False 176335.49033877085 162452.97265850296 177130.66636896625 165328.5349533835 166959.65714252653 170098.30520015222 222233.26172876675 134972.90978387694 157072.7549529027 182891.95754388918 0.9641511453364757 0.8882455786472655 0.9684989364634016 0.903968316451034 0.9128868179042847 0.9300480320974922 1.215106802470725 0.7379925918912374 0.8588281139437717 1.0 17.480632110121288 1.6487099629872106 24.99999999992206 0.8485855874299849 0.9609410815845026 0.15898135200585883 0.10570008704056137 0.8576769945419704 518.5085528309958 0.04730163263038178 0.02623012149823405 44.535872296049355 -1.6487099629872106 0.11235549415451773 TPYHVNLLLAGYDEHEGPALYYMDYLAALAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TPYHVNLLLAGYDEHEGPALYYMDYLAALAK 31 0 P49721 P49721 PSMB2 Proteasome subunit beta type-2 0 ; 153.77 3.566e-09 1218800000.0 438870.0 422850.0 403970.0 398670.0 383360.0 470410.0 511280.0 384190.0 576060.0 469340.0 False True 436507.1726830408 436924.30663177767 460845.46462981397 449141.58112344367 432178.6236472588 437891.6639260302 486547.43312072847 412860.2086772907 434097.731808526 439386.31937781 0.9934473456095624 0.994396701404999 1.0488389016808513 1.022202015209412 0.9835959942021918 0.996598311358678 1.1073340512961365 0.9396291838624348 0.9879636954177979 1.0 18.745130425506492 1.6330664266472972 24.999999999987615 0.9728412138588953 1.0190000820244312 0.23388017857847876 0.037130540470036735 1.1061895812927807 1093.8751149602708 0.0168348804422976 0.00933061449963056 42.9602130678017 -1.6330664266472972 0.04615886816553583 TQADLDSLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 TQADLDSLVR 10 0 Q7Z4W1;J3KS22;J3QS36 Q7Z4W1 DCXR L-xylulose reductase 0 ;;; 181.87 4.2801e-06 590830000.0 966400.0 1066880.0 1057180.0 1046510.0 1021350.0 1132040.0 1146010.0 955080.0 1278730.0 1110800.0 False True 961197.0097771339 1102390.455857421 1206021.7548267122 1178998.0586989122 1151412.8684842642 1053784.7393355218 1090573.1181166614 1026352.9193979723 963604.1256041325 1039907.7929962737 0.9243098438637993 1.060084810674528 1.159739125862127 1.1337524986728673 1.1072259254512482 1.01334440075621 1.0487209783998312 0.9869653120309388 0.9266245835389998 1.0 19.988024181840093 1.9449516324463398 1.3850507023947685 0.9632249489242098 1.079358390608005 0.310849755746582 0.06394491491858773 0.5086350789886243 1.8123354794735937 0.04842410404948657 0.02186894999704634 88.09507556993056 -1.9449516324463398 0.11613344168379525 TQAPPT(ph)PDKVQMTWTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQAPPTPDKVQMTWTR 16 1 A0A0G2JNW7;Q9Y666;A0A0G2JQE3;H0YB78;A0A0U1RR18 A0A0G2JNW7 SLC12A7 Solute carrier family 12 member 7 1 TQAPPT(1)PDKVQMTWTR 135.21 3.8948e-05 187820000.0 200030.0 184790.0 220710.0 174500.0 243290.0 364570.0 216350.0 195660.0 300990.0 250470.0 True False 198953.0607054222 190940.62344208613 251784.04955428978 196591.68210811177 274271.5394071931 339368.1340054696 205884.32396274005 210261.1427413485 226815.04755936566 234484.79016184452 0.8484689372308633 0.8142985449516635 1.0737756141048853 0.8383984392864952 1.1696773134747342 1.4472927381397882 0.878028480314804 0.8966941633878405 0.9672910869946614 1.0 17.839134819907805 3.2528923866944837 24.998655564804967 1.0492282991209436 0.9009213390967106 0.18988397391380563 0.16694878696866372 511.0764056347019 891456.4667748736 0.05133527155732354 0.06919092075137781 1790.1622169382438 -3.2528923866944837 -0.14830696002423305 TQAPTKAS(ph)E ddPTM_BT-474_Trastuzumab_2h_R1 4 TQAPTKASE 9 1 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 TQAPT(0.214)KAS(0.786)E;TQAPT(0.013)KAS(0.987)E;TQAPT(0.1)KAS(0.9)E;TQAPT(0.005)KAS(0.995)E 113.38 0.0047614 1359030000.0 2696580.0 2013780.0 1814470.0 1826860.0 1835150.0 2256400.0 2372320.0 2265840.0 3377160.0 2424960.0 True False 2682061.912898201 2080807.4499442847 2069931.6043440318 2058140.2886878245 2068845.47471376 2100420.3789942716 2257561.8184575336 2434928.486502386 2544904.1696255268 2270196.9766872935 1.1814225551528605 0.916575729468476 0.9117850237667517 0.9065910622835445 0.9113065940791848 0.9252150366525629 0.9944343339544935 1.072562650513028 1.1210058844052775 1.0 21.114386049642594 1.881665172742233 3.2119849765665247 1.0722363733020865 0.9505488262782124 0.24108052084207066 0.0823831781255612 0.31843525895706004 5.679731548958876 0.04234828313998427 0.02263117032572496 76.14916977314722 -1.881665172742233 -0.12168754702387419 TQATGLTKPTLPPS(ph)PLMAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQATGLTKPTLPPSPLMAAR 20 1 B1AHC3;B1AHC4;H0Y9T8;P85298-4;P85298-3;P85298 B1AHC3 PRR5-ARHGAP8;ARHGAP8 Rho GTPase-activating protein 8 1 TQATGLTKPT(0.002)LPPS(0.998)PLMAAR 121.3 1.969e-05 470130000.0 492640.0 455340.0 502580.0 428010.0 394260.0 539590.0 560930.0 426590.0 626920.0 550350.0 True False 489987.68097744934 470495.7166411576 573338.8954963296 482196.0221151461 444466.6740378973 502289.4133582332 533795.6729393107 458424.3119801277 472423.9662976095 515226.19182165933 0.9510146975351245 0.9131828391286738 1.1127906628139461 0.9358919048937901 0.862663197432605 0.9748910698470391 1.036041415231621 0.8897535087634033 0.9169253694717728 1.0 18.974846409990946 TQAVFNHTEDYVLLPDER ddPTM_BT-474_Trastuzumab_2h_R1 2 TQAVFNHTEDYVLLPDER 18 0 Q05048 Q05048 CSTF1 Cleavage stimulation factor subunit 1 0 ; 214.69 9.915899999999999e-19 840610000.0 489060.0 551710.0 557910.0 509670.0 461090.0 453490.0 581220.0 505270.0 744410.0 557400.0 False True 486426.9552996742 570073.3338342619 636458.8785593484 574194.169742357 519807.07840545406 422141.30370063486 553104.1681239832 542975.8131090726 560960.1300829514 521826.25478585134 0.9321626706944739 1.092458128746723 1.219675845594508 1.1003550788719831 0.9961305580892515 0.8089690770232987 1.0599393247297757 1.04052988543457 1.0749940711840187 1.0 18.993210007125057 4.756469692353591 22.510941948242763 1.043985883236602 0.9321622934623085 0.10335374887115989 0.09852906498229808 2405.489879535355 3023400.0591717106 0.025442340961912207 0.678049788877065 57078.124227938824 -4.756469692353591 -0.11182358977429352 TQDECILHFLR ddPTM_BT-474_Trastuzumab_2h_R1 6 TQDECILHFLR 11 0 Q92922;F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 Q92922;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 0 ;;;;; 236.11 1.5285e-15 2488790000.0 2840640.0 3271860.0 3045660.0 2972460.0 2619180.0 2943570.0 3095490.0 2695790.0 3911780.0 3093940.0 False True 2825346.3098647725 3380761.8822188596 3474462.4546487094 3348773.1312268097 2952717.047903868 2740087.934318453 2945749.322779859 2896963.538744249 2947774.2341665043 2896482.100344697 0.9754406248630161 1.1671958483073417 1.1995456330405874 1.1561518473835166 1.019414912853243 0.9460054781599955 1.0170093308808292 1.000166214871307 1.0177084242349377 1.0 21.46587031880697 3.1675921849783193 5.498600982283137 0.9972198569846751 1.1328147248237401 0.5181960329608362 0.05881246634928266 0.15424728416847608 8.429021989648831 0.017219707626875334 0.02090618134611989 1470.9306075267093 -3.1675921849783193 0.13559486783906505 TQDHDENVALEACEFWLTLAEQPICK ddPTM_BT-474_Trastuzumab_2h_R1 3 TQDHDENVALEACEFWLTLAEQPICK 26 0 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 0 ;; 161.68 1.6862e-11 389757000.0 324634.0 316063.0 271184.0 259351.0 269367.0 359559.0 325793.0 296045.0 420434.0 330552.0 False True 322886.20661422797 326582.96589088184 309364.35002641706 292184.81000814325 303669.29078670527 334703.53264084377 310033.1479398798 318137.38118605013 316823.6742269653 309455.888360195 1.0433997825189243 1.055345780044591 0.9997041958572416 0.9441888844204224 0.9813007352868518 1.0815872155945583 1.0018654018275228 1.0280540560137936 1.0238088404321928 1.0 18.2393742484012 TQDPSS(ph)PGTTPPQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 TQDPS(0.014)S(0.981)PGT(0.005)TPPQAR 171.44 1.1366e-06 412950000.0 514270.0 504890.0 472390.0 460600.0 462090.0 577680.0 619530.0 516130.0 596970.0 618580.0 True False 511501.22746076813 521694.9584375504 538898.405912514 518911.91277361807 520934.4224779891 537746.3413124493 589560.967065571 554646.2414550357 449854.7424881706 579101.6948070184 0.8832666732761374 0.9008693345499561 0.9305764613451841 0.8960635367274169 0.8995560316078627 0.928587061883232 1.0180612012576444 0.957770019374348 0.7768147572734726 1.0 19.14345719348189 2.5807608150677144 5.284797641727916 0.9437357271580433 0.9036429660408759 0.0688365267765556 0.061659349758620405 0.6157408503976473 25.56006756524724 0.02039283647680792 0.019066085281046242 380.8560115892317 -2.5807608150677144 -0.04009276111716742 TQDQISNIK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQDQISNIK 9 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ; 214.05 2.0645e-06 1244670000.0 1064650.0 1007890.0 931410.0 867740.0 806400.0 1057700.0 1101320.0 1031140.0 1318980.0 1069540.0 False True 1058918.0426937344 1041437.00936763 1062544.43203915 977595.7950286133 909090.2600927317 984583.6885579857 1048044.9441490402 1108088.902822825 993935.0524264985 1001281.0415207372 1.0575632602465523 1.0401045921991134 1.0611850099801814 0.9763450564727052 0.9079271676931114 0.9833240096732564 1.0467040727718946 1.1066712110516632 0.9926634093829624 1.0 19.93341553880344 -0.644006746245903 7.919417096318373 1.0000024649262036 1.0228634261689022 0.007250153349926403 0.05330263597860367 0.0 0.0 0.05817795139938564 0.013712674650015664 0.22698295925191256 0.644006746245903 0.022860961242698652 TQDQQSLS(ph)DVEGAYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TQDQQSLSDVEGAYSR 16 0 A0A087WXR4;Q8NG45;Q8NG42;P06401-5;P06401;Q8NG44 A0A087WXR4 PGR;PR Progesterone receptor 1 TQDQQS(0.001)LS(0.999)DVEGAYSR;TQDQQS(0.015)LS(0.985)DVEGAYSR;TQDQQSLS(1)DVEGAYSR 299.91 7.7423e-46 1169910000.0 718260.0 643910.0 634770.0 627930.0 632430.0 813710.0 757150.0 744060.0 904880.0 850230.0 True False 714392.9679661875 665342.1550981848 724140.0984802525 707425.873616886 712966.2117937076 757460.1429673046 720523.761906118 799585.5354601244 681884.4487707865 795967.5934814754 0.8975151423458217 0.8358910093161593 0.909760779723384 0.888762154904677 0.8957226621190333 0.9516218363291106 0.9052174583573506 1.004545338287988 0.8566736313827783 1.0 19.602350169432764 7.999975703292682 0.07934895635318821 1.0714338264061665 0.5094240807288667 0.3572970960974421 0.04221765403424854 181.61969045595265 1.0505345097460423 1.1319618774342803 11.204202702352767 99994405.63288261 -7.999975703292682 -0.5620097456772998 TQEDEEEISTS(ph)PGVSEFVSDAFDACNLNQEDLRK ddPTM_BT-474_Trastuzumab_2h_R1 4 TQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRK 34 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 TQEDEEEIS(0.009)T(0.182)S(0.764)PGVS(0.045)EFVSDAFDACNLNQEDLRK;TQEDEEEIST(0.021)S(0.979)PGVSEFVSDAFDACNLNQEDLRK;TQEDEEEIST(0.007)S(0.993)PGVSEFVSDAFDACNLNQEDLRK;T(0.001)QEDEEEIS(0.128)T(0.158)S(0.629)PGVS(0.084)EFVSDAFDACNLNQEDLRK 181.44 3.6044e-20 310523000.0 190681.0 199654.0 164934.0 172511.0 166461.0 243844.0 237384.0 205771.0 346229.0 257323.0 True False 189654.39468265066 206299.36269660815 188155.2735679726 194350.8749120487 187658.8216583535 226987.63822703357 225900.82902505697 221126.67690396638 260905.50218090854 240900.4258346961 0.7872729739912953 0.8563677792673106 0.7810499832701965 0.8067684988046084 0.77898916537044 0.9422467288737407 0.9377352831251045 0.9179173350889038 1.0830429264576715 1.0 17.87807741823761 2.1979021958771456 0.8894843899471869 1.0167972662560458 0.8003765319487438 0.7778301185328342 0.04664947454049276 0.2860586371400893 0.42763895465805735 0.036697135497589586 0.020578021158526052 157.72560279908697 -2.1979021958771456 -0.21642073430730202 TQEELRR ddPTM_BT-474_Trastuzumab_2h_R1 3 TQEELRR 7 1 P15924 P15924 DSP Desmoplakin 0 ;; 105.57 0.012663 378108000.0 378741.0 468450.0 406720.0 413820.0 401800.0 377120.0 440100.0 381510.0 400760.0 432450.0 False True 376701.9005380809 484042.0750659956 463982.64072638564 466209.56957007974 452966.8483448159 351050.582044992 418810.68165473524 409980.2134685267 301998.06790887215 404850.6707609284 0.930471227403573 1.1956064544890705 1.1460587180313102 1.1515593359245904 1.1188491981338495 0.8671112768201233 1.0344818766573083 1.0126702092353144 0.7459492838217562 1.0 18.627030342237312 2.7572851462128103 23.678437416607775 0.9480020209585674 1.1178255512537028 0.4207653198394503 0.10238202834485437 418.4860567493292 529202.7692786345 0.030734235174768518 0.03253306163503814 571.8539775601396 -2.7572851462128103 0.1698235302951353 TQEHFTHNTVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQEHFTHNTVR 11 0 Q08209-3;Q08209-2;Q08209;E7ETC2;Q08209-5 Q08209-3 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 0 163.71 1.3662e-05 131110000.0 41703.0 63789.0 64269.0 75456.0 77266.0 69352.0 63929.0 49970.0 53096.0 67903.0 False True 41478.47568163889 65912.17830373523 73317.51656383787 85008.721863322 87105.36710853795 64557.859477047765 60836.51003750404 53699.01514251859 40011.20224994875 63569.37240531698 0.6524915082875603 1.0368543185149064 1.1533465533742715 1.3372591020925642 1.3702411053102108 1.015549737779826 0.9570097632805266 0.8447309311178157 0.6294100560697401 1.0 15.956044224906812 2.054558896877736 2.0765736159482437 0.8089212996747449 1.1212949152543865 0.2623562333970908 0.203242390649129 0.4310822073365671 3.5338520109588485 0.11745573826768355 0.06490578217121155 113.38585959951578 -2.054558896877736 0.3123736155796416 TQEISRPNS(ph)PSEGEGESSDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQEISRPNSPSEGEGESSDSR 21 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 TQEISRPNS(0.987)PS(0.013)EGEGESSDSR 100.24 0.00043538 422830000.0 73522.0 84893.0 73323.0 72550.0 91051.0 92493.0 87369.0 74813.0 79303.0 88267.0 True False 73126.16572106208 87718.61218609782 83646.24106505892 81734.82256128083 102645.80514844168 86099.17661510245 83142.62768800839 80395.92595271641 59759.83825575727 82633.72449081941 0.8849433590420624 1.0615352596849648 1.0122530671403054 0.9891218514586203 1.2421781274042125 1.041937503672221 1.0061585412048748 0.9729190648020274 0.7231894559272416 1.0 16.334443074341134 1.4974370193485098 3.945637452070241 0.8564493821440734 1.0392373996038202 0.29056591033485646 0.10474951679829884 0.21519856445357646 7.03537805328835 0.06737052791592861 0.026362138185355953 31.436704974205824 -1.4974370193485098 0.18278801745974682 TQFEDLVPS(ph)PTSEK ddPTM_BT-474_Trastuzumab_2h_R1 6 TQFEDLVPSPTSEK 14 0 Q9Y4J8;Q9Y4J8-2;Q9Y4J8-15;Q9Y4J8-14;Q9Y4J8-13;Q9Y4J8-6;Q9Y4J8-10;Q9Y4J8-11;M0QZ28;M0R0C4 Q9Y4J8 DTNA Dystrobrevin alpha 1 TQFEDLVPS(0.995)PT(0.004)S(0.001)EK;TQFEDLVPS(0.998)PT(0.002)SEK;TQFEDLVPS(0.998)PT(0.002)SEK;TQFEDLVPS(1)PTSEK;TQFEDLVPS(0.91)PT(0.078)S(0.012)EK;TQFEDLVPS(0.971)PT(0.024)S(0.005)EK 257.35 2.5367e-24 2594420000.0 2618330.0 2375910.0 2200550.0 2052800.0 2119320.0 3006140.0 2955670.0 2610070.0 3494700.0 2820910.0 True False 2604233.2022038116 2454990.728082075 2510368.312476518 2312684.2695216737 2389202.8398062075 2798332.617492396 2812692.9503441276 2804846.6770669096 2633478.011580837 2640877.1086974433 0.9861243424114856 0.9296118778101519 0.9505812687038301 0.8757258192382743 0.9047004996702142 1.0596224293347047 1.0650601427384967 1.0620890566355587 0.9971982425489477 1.0 21.33258573762288 2.736199562468373 24.997910610072022 1.0447068071459724 0.9275639086398675 0.6976073191378795 0.0351679995524192 111.52920416890791 1180820.5682224059 0.011400923683822936 0.011229241661183945 544.7529145138716 -2.736199562468373 -0.11714289850610493 TQHEILR ddPTM_BT-474_Trastuzumab_2h_R1 6 TQHEILR 7 0 P49257 P49257 LMAN1 Protein ERGIC-53 0 ;;;;; 163.99 0.0012145 1491750000.0 1019990.0 1554051.0 1568845.0 1411687.0 1286809.0 1437750.0 1465703.0 899123.0 1840020.0 1314014.0 False True 1014498.4871715421 1605776.6480913342 1789724.7393548086 1590406.4294564717 1450676.4986354995 1338361.7265994565 1394801.3463608036 966220.1239140833 1386571.726004797 1230152.501536016 0.8246932684401326 1.3053476264823258 1.4548803803756765 1.2928530629093782 1.1792655762794684 1.0879640735017215 1.1338442547726406 0.7854474324993231 1.127154335965232 1.0 20.230405746329094 2.3574983353496632 1.5951218257255122 0.9583721485026158 1.2355305996001305 0.22643603128902712 0.17473184633550184 0.4745807625922499 2.439921637077466 0.08953767773480657 0.06138324489258818 227.7709511382196 -2.3574983353496632 0.2771584510975147 TQHIQQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQHIQQPR 8 0 P51397 P51397 DAP Death-associated protein 1 0 ; 107.47 0.0069852 0.0 72347.0 102555.0 130762.0 97018.0 78948.0 73935.0 96100.0 72537.0 118150.0 79201.0 False True 71957.49179050732 105968.48117919326 149172.15299632086 109300.4688525203 89001.55983854285 68824.04747426929 91451.27586234959 77950.07927542255 89033.51562888816 74146.32437261243 0.970479553765802 1.429180503225795 2.011861737699581 1.474118505230892 1.2003502613464345 0.928219275286031 1.2333892021777564 1.0513006536061702 1.2007812441445125 1.0 16.178087555832334 3.1758411370919224 3.9985986041277353 1.0940981057410712 1.5093795839741313 0.3481634067241074 0.24905412150223347 0.2417439160710789 7.727925766819402 0.07560420046715383 0.09412467962435997 1499.1363580634998 -3.1758411370919224 0.41528147823306005 TQIAICPNNHEVHIYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQIAICPNNHEVHIYEK 17 0 A0A1W2PNV4;C9JEY1;C9K057;O15143;F8VXW2;C9JBJ7;C9JTT6 A0A1W2PNV4;C9JEY1 ARPC1B Actin-related protein 2/3 complex subunit 1B 0 ; 170.19 1.0872e-09 834790000.0 1031730.0 997410.0 907560.0 939090.0 965210.0 1176920.0 1072200.0 419720.0 1434350.0 971810.0 False True 1026175.2803159802 1030608.1889029238 1035336.5593470668 1057978.6977129327 1088123.7722521147 1095562.290571678 1020333.5897982419 451041.6376949745 1080873.6618052952 909788.2537915994 1.1279275985805823 1.1328000604622008 1.1379972812709298 1.1628845429733132 1.1960187084382448 1.2041948068749553 1.1215066643759555 0.4957655100681178 1.1880496998072756 1.0 19.795171282658373 1.964396807819139 24.638405892526233 0.831093157040645 1.1600363390174395 0.32406680613154404 0.16550028563570882 420.6247278992976 291083.414250053 0.06428927871184531 0.0415132380114752 92.12909559081768 -1.964396807819139 0.3289431819767945 TQIALSPNNHEVHIYK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQIALSPNNHEVHIYK 16 0 A0A1W2PNV4;E9PF58;Q92747 A0A1W2PNV4;Q92747 ARPC1A Actin-related protein 2/3 complex subunit 1A 0 ; 174.52 2.2207e-09 1068170000.0 908590.0 1639390.0 998980.0 1969690.0 963000.0 1222060.0 1279350.0 573010.0 1476000.0 1456250.0 False True 903698.2523938387 1693956.1051178167 1139627.7007101802 2219052.552043133 1085632.341851812 1137581.8686198103 1217462.9529083972 615770.9158858227 1112259.5773867029 1363310.8782416498 0.6628702717896572 1.2425310559412694 0.8359265072248464 1.6276937178886068 0.7963204571887685 0.834425872173061 0.8930193196130276 0.4516731478589992 0.8158517584934524 1.0 20.378683149337615 3.034354452240314 24.999995067277045 0.7542177878284942 1.100596130756806 0.20978310974639347 0.27222627169343 236.90511690548468 172396.16976629864 0.07616786424854759 0.09103765171202662 1082.3169308625525 -3.034354452240314 0.3463783429283117 TQIDHYVGIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TQIDHYVGIAR 11 0 O95197-3;O95197-4;O95197-7;O95197-2;O95197 O95197-3;O95197-7 RTN3 Reticulon-3 0 ;;; 160.72 2.7147e-05 2811530000.0 2281020.0 2641340.0 2697270.0 2198360.0 3125820.0 3287290.0 2519820.0 2252200.0 2732910.0 2622770.0 False True 2268739.2417651485 2729255.4051762526 3077022.1709088744 2476672.150597071 3523874.648813317 3060047.379748308 2397926.6799528156 2420270.600439871 2059420.949617813 2455382.573133635 0.9239860486871965 1.1115397800079247 1.2531742322264199 1.0086705744743742 1.4351631747210944 1.2462609343369988 0.9766000240412669 0.9856999992270237 0.8387372999025225 1.0 21.22751639767752 2.160082505602583 6.56254202844945 0.951115345611698 1.1698862438039788 0.36465119442491445 0.13767874920819648 0.2418526171541082 16.267632075079344 0.053109680695738216 0.03918743000297799 144.57143959436968 -2.160082505602583 0.2187708981922808 TQLAS(ph)WSDPTEETGPVAGILDTETLEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TQLASWSDPTEETGPVAGILDTETLEK 27 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 T(0.005)QLAS(0.947)WS(0.043)DPT(0.004)EETGPVAGILDTETLEK;T(0.082)QLAS(0.871)WS(0.047)DPTEETGPVAGILDTETLEK;T(0.012)QLAS(0.975)WS(0.012)DPTEETGPVAGILDTETLEK 285.09 1.3304999999999995e-61 321709000.0 350174.0 299760.0 289830.0 289217.0 271685.0 359696.0 333128.0 298171.0 405635.0 331883.0 True False 348288.702091989 309737.3303912533 330635.5447524796 325831.8425459127 306282.47434684273 334831.06215330755 317013.32596745854 320422.03410165873 305671.68948052515 310701.94280066824 1.1209736860751935 0.9968953769625 1.064156669804282 1.0486958646246738 0.985775858322647 1.0776600208390696 1.0203133044804917 1.031284295210302 0.9838100358343421 1.0 18.245171737010587 4.75022696268375 24.472680226804574 1.026786570611247 1.1209737623010991 0.4676128532146411 0.031091233764939923 1111.6413465535459 2331849.1501915087 0.006934735088908132 0.10483957258758551 56263.528207302756 -4.75022696268375 0.09418719168985223 TQLASWS(ph)DPTEETGPVAGILDTETLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLASWSDPTEETGPVAGILDTETLEK 27 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 1 T(0.065)QLAS(0.36)WS(0.546)DPT(0.023)EET(0.006)GPVAGILDTETLEK 203.99 2.3335e-25 120460000.0 44346.0 39457.0 42729.0 39458.0 40044.0 48076.0 44735.0 41136.0 55633.0 41830.0 True False 44107.24606330379 40770.302392739795 48744.8717928741 44453.37875428014 45143.36604061673 44752.61927873097 42570.9971457045 44205.7772043755 41922.99259400706 39160.37358753526 1.1263234239763005 1.0411111707503469 1.2447499175132892 1.135162274560875 1.152781802239646 1.1428036859427644 1.087093744153014 1.1288395169561456 1.0705462883365122 1.0 15.25710690777792 0.8527961098684923 0.8219536569885393 0.9992473689138855 1.13927383686711 0.4329833466245051 0.04830918373303975 0.765001249424426 1.0724548078372023 0.04567864999183601 0.016180221356479833 7.125184424403284 -0.8527961098684923 0.1400264679532245 TQLEELEDELQATEDAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TQLEELEDELQATEDAK 17 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749;P35749-2;P35749-4;P35749-3 P35579;P35580;P35749 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 0 ;; 272.97 2.7844e-35 226091000.0 262968.0 215232.0 182349.0 173490.0 169348.0 259123.0 249975.0 234961.0 337264.0 255277.0 False True 261552.20950649123 222395.86700950834 208022.1541940786 195453.81621166953 190913.4639957636 241210.43691993115 237882.75425276576 252494.9829277828 254149.8063060631 238985.00330636484 1.094429382128202 0.9305850322516254 0.870440200498298 0.817849712356675 0.7988512306398726 1.0093120220213712 0.995387789868195 1.0565306585539134 1.0634550402322018 1.0 17.86656056404719 2.5677234049595836 7.702288408964049 1.0307545689892657 0.8975630349599261 0.3832947526579804 0.07786118010292456 0.3115073536667162 23.579858102225337 0.02695970852146953 0.025357221854060828 369.5927172605811 -2.5677234049595836 -0.1331915340293396 TQLEWTEAILEDEQTQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLEWTEAILEDEQTQR 17 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;F8W7S5;A0A087WU26 Q9P2E9 RRBP1 Ribosome-binding protein 1 0 131.24 6.425e-05 20107000.0 16423.0 23758.0 18868.0 19866.0 19144.0 18369.0 20214.0 20443.0 23819.0 21318.0 False True 16334.580392766826 24548.770667985737 21524.45039640404 22381.033563093137 21581.874924622105 17099.19426597489 19236.17159502115 21968.560467450603 17949.12660824788 19957.46698874197 0.8184696185132704 1.2300544293438505 1.0785161467908733 1.1214365818927976 1.0813934923102448 0.8567817887721205 0.9638583696955279 1.1007689743314166 0.8993689739470947 1.0 14.284641004298901 TQLGEDHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQLGEDHEK 9 0 K7EIG1;A0A494C0R8;O75153;I3L2B0 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ; 104.07 0.0033198 668020000.0 1927050.0 2016760.0 1822710.0 1933560.0 1857530.0 2108900.0 2163110.0 1790680.0 2361300.0 2035610.0 False True 1916674.9769153835 2083886.6374428358 2079331.724720671 2178348.497747628 2094075.4350571085 1963116.7068166202 2058472.1054173445 1924309.634488798 1779389.25479893 1905695.6270266005 1.005761334461324 1.0935044441982906 1.0911142866843797 1.1430726223297472 1.0988509420701307 1.030131296402045 1.080168352293024 1.0097675658159746 0.9337216445079728 1.0 20.86188628330193 1.593931383709054 2.919311892670656 0.9664058781649513 1.0807620729055307 0.5755881874973596 0.0388233231326191 0.15330639777133714 3.0248477998557974 0.02665297891803958 0.010584432205327017 39.25829044228673 -1.593931383709054 0.11435619474057945 TQLS(ph)PSIK ddPTM_BT-474_Trastuzumab_2h_R1 3 TQLSPSIK 8 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 TQLS(0.921)PS(0.079)IK;TQLS(0.966)PS(0.034)IK;TQLS(0.915)PS(0.085)IK 127.87 0.0012146 649670000.0 1038160.0 792420.0 731410.0 656360.0 728510.0 1022910.0 948230.0 866150.0 1195490.0 924160.0 True False 1032570.6619104183 818795.2206719955 834386.1704703129 739455.1087018934 821281.4302829313 952198.6393711359 902360.4923096327 930786.5112205805 900877.5082452776 865179.3175868168 1.193475896754553 0.9463878805561404 0.9644083642655802 0.8546842182547809 0.9492615156054276 1.1005795215112584 1.0429751081273217 1.0758307466442416 1.0412610310172823 1.0 19.722639652021055 2.7471756004392445 24.678222552646528 1.0575543754228685 0.9716741142652303 0.14391499281435616 0.08369761215125288 900.4499544823437 2579400.5755119943 0.025872274251897916 0.02704676591217991 558.6960494145712 -2.7471756004392445 -0.08588026115763814 TQLS(ph)PSIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLSPSIKR 9 1 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 TQLS(0.891)PS(0.109)IKR 71.806 0.02973 595770000.0 317970.0 297130.0 273850.0 278760.0 283120.0 436580.0 355400.0 312380.0 508490.0 405120.0 True False 316258.0848497879 307019.79243112233 312405.6996531296 314050.98741809354 319173.65381628746 406400.25219877664 338207.94424015627 335691.3818334994 383179.4529169133 379264.8947593186 0.8338712314792149 0.8095128145882233 0.8237137261316584 0.8280518227699144 0.8415586526109541 1.071547242611732 0.89174597731958 0.8851106086328635 1.0103214355235248 1.0 18.532846314562228 2.9668457052504853 24.286295055278433 0.9519838917432655 0.8242678437452836 0.6394927700302516 0.05331924076206126 328.0424142179472 240298.71634091326 0.016732386246871053 0.017760591383564735 926.5006007407187 -2.9668457052504853 -0.12771604799798186 TQLS(ph)QGR ddPTM_BT-474_Trastuzumab_2h_R1 4 TQLSQGR 7 0 Q8ND56-2;Q8ND56 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 TQLS(1)QGR;TQLS(1)QGR;TQLS(1)QGR;TQLS(1)QGR 130.66 0.0037155 2179970000.0 1419300.0 1432990.0 1358060.0 1276070.0 1394880.0 1221380.0 1259350.0 1096670.0 1587940.0 1262420.0 True False 1411658.646499055 1480686.205889254 1549263.0435308716 1437620.3311615956 1572509.6998985005 1136948.875419262 1198430.4293158147 1178509.0841774242 1196613.4643058549 1181851.2747878605 1.1944469465943965 1.2528532459848079 1.310878176113116 1.2164139108109395 1.330547873022993 0.962006725950642 1.0140281225579169 0.9971720717473219 1.0124907336759814 1.0 20.172617066238963 2.7341290352114647 24.99923016687739 0.9983925100397241 1.2608647689241645 0.9178564910429452 0.03947114490879698 93.76501786819942 528940.9366295653 0.011996606248769023 0.011661592862169431 542.1619506801461 -2.7341290352114647 0.2624722588844405 TQLS(ph)QGRSS(ph)PQLDPLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLSQGRSSPQLDPLRK 17 2 Q8ND56-2;Q8ND56 Q8ND56-2 LSM14A Protein LSM14 homolog A 2 T(0.393)QLS(0.436)QGRS(0.404)S(0.767)PQLDPLRK 56.76600000000001 0.057952 169890000.0 157540.0 127150.0 144540.0 171400.0 155220.0 177750.0 166800.0 127470.0 246430.0 186420.0 True False 156691.82214433956 131382.11088620184 164889.97563579818 193099.2224259622 174986.34693898048 165462.56087849286 158731.24676212185 136982.45867954456 185700.62849282185 174522.5159978082 0.8978315562807233 0.7528089435053289 0.9448063173571771 1.1064430358566875 1.0026577140406234 0.9480871848109896 0.9095172955454948 0.7848984865727292 1.0640496868332683 1.0 17.41305365197688 4.149813934311706 8.234884649370874 0.9560141420260477 0.8259194717768247 0.28454374773483193 0.0897148182158199 0.3434899964675552 27.763586718357807 0.024772852556933445 0.05393877137985893 14119.32497844155 -4.149813934311706 -0.13009467024922305 TQLSQGRS(ph)S(ph)PQLDPLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLSQGRSSPQLDPLRK 17 2 Q8ND56-2;Q8ND56 Q8ND56-2 LSM14A Protein LSM14 homolog A 2 T(0.22)QLS(0.236)QGRS(0.597)S(0.948)PQLDPLRK 48.229 0.09525 171460000.0 178040.0 183150.0 172200.0 196120.0 225240.0 214260.0 208650.0 139650.0 262940.0 228150.0 True False 177081.45242210347 189246.0370334871 196444.26321076826 220948.77189136317 253922.97889792503 199448.71051378828 198556.80237959628 150071.3921283313 198141.96021548775 213589.27167095803 0.8290746582763943 0.8860278213084947 0.919729074751459 1.0344563196588952 1.188837701966148 0.9337955457849316 0.929619736170458 0.7026167136312056 0.9276774936558264 1.0 17.7044796584669 0.9552446708306681 23.116276438691234 1.00000000311986 0.9209990842369309 0.029174970803872102 0.11925338423675767 21301.69385246746 11002407.907621257 0.13017780494705572 0.03254445130350935 9.020792037154315 -0.9552446708306681 -0.07900091888292904 TQLWASEPGT(ph)PPLPTSLPSQNPILK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQLWASEPGTPPLPTSLPSQNPILK 25 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 1 TQLWASEPGT(1)PPLPTSLPSQNPILK;TQLWAS(0.003)EPGT(0.996)PPLPTSLPSQNPILK 195.89 3.2632e-24 4341500000.0 2173000.0 2003310.0 2072160.0 1971850.0 1804350.0 2581870.0 2685320.0 2291250.0 3008860.0 2583810.0 True False 2161300.8094429984 2069988.962323532 2363902.116462403 2221486.0078216637 2034123.277279661 2403391.4039682397 2555420.812681415 2462234.709731752 2267366.7696583713 2418909.033688969 0.8935023100669875 0.8557531240299208 0.9772596172652771 0.9183834434789703 0.8409259087256834 0.9935848642902193 1.0564352677555047 1.0179112465327846 0.9373509867795701 1.0 21.205925085184614 2.6061340803988875 6.586632253109905 1.0096745619671985 0.9007996458691877 0.579229019433924 0.044093459288521764 0.17565906587833824 8.665390560749227 0.014659980520276452 0.01378365122972484 403.77003026518315 -2.6061340803988875 -0.10887491609801081 TQLWFHGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLWFHGR 8 0 Q14451;Q14451-3;Q14451-4 Q14451 GRB7 Growth factor receptor-bound protein 7 0 103.55 0.0047518000000000005 503090000.0 147040.0 195190.0 218140.0 175590.0 103230.0 157510.0 204830.0 117360.0 303950.0 173070.0 False True 146248.3529776796 201686.7811551533 248852.21589312973 197819.67599635164 116375.72860785305 146621.70443865794 194921.59037341343 126117.99914200483 229045.59522133353 162024.52442731848 0.9026309658651965 1.244791687357346 1.5358922778678528 1.2209242810343213 0.718259961071864 0.9049352556774823 1.2030375713946442 0.7783883309503512 1.4136476933408904 1.0 17.305852673916096 3.443125438097621 24.96333546958056 0.9853937269405922 1.2542962272508082 0.17223262092797975 0.23552579953859126 261.85416862543343 192280.3806851642 0.0641419272271267 0.08684891945392194 2774.1212436411124 -3.443125438097621 0.268902500310216 TQLYEYLQNR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQLYEYLQNR 10 0 Q9Y2X3;H7BZ72 Q9Y2X3 NOP58 Nucleolar protein 58 0 106.62 0.0055662 254960000.0 124780.0 137310.0 133700.0 111380.0 135030.0 146950.0 139030.0 127990.0 184840.0 148540.0 False True 124108.19834436126 141880.2803443523 152523.7978587673 125480.69657995124 152225.27011448613 136791.69238309152 132304.58775382355 137541.2637200512 139288.65872910444 139060.05002850806 0.8924791722634818 1.020280665189363 1.0968196676723407 0.9023489963812541 1.0946729134879438 0.9836879273022588 0.9514205390167801 0.9890781981730519 1.0016439566974809 1.0 17.085348488106256 4.744292201885259 24.1142668423341 1.0028592477844005 0.8924790936999321 0.26720639672143365 0.05556723618493911 524.708046621228 2207473.4135550493 0.012621347142952963 0.11177657404615948 55499.90016304732 -4.744292201885259 -0.11038015408446844 TQMAEVLPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 TQMAEVLPSPR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR 144.55 3.8458e-05 1397680000.0 536650.0 759080.0 666190.0 696280.0 687970.0 874050.0 834010.0 841330.0 1099110.0 936990.0 True False 533760.7360274203 784345.5189264496 759983.7613727167 784428.9766088024 775578.9015823376 813628.9807923865 793665.750072405 904114.3167871747 828249.067819443 877190.4960025018 0.6084889638680011 0.8941564261136415 0.8663839437796977 0.8942515681412093 0.8841624540128687 0.9275396672675144 0.9047815197374658 1.0306932426962776 0.9442066137217711 1.0 19.74253065552682 5.333109914918584 0.9563065950036694 0.9450943686029422 3.3042964895050064e-57 0.7948729966726729 0.048787719304569044 2.5813758147805244 0.8406246918897097 0.015922355386631178 3.3077923119682318 215332.6647876028 -5.333109914918584 -0.9450943686029422 TQPDGTSVPGEPAS(ph)PISQR ddPTM_BT-474_Trastuzumab_2h_R1 5 TQPDGTSVPGEPASPISQR 19 0 Q14980;Q14980-2;A0A087WY61;Q14980-5;H0YFY6 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 1 TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR 404.65 1.651399999999999e-147 12721390000.0 4779110.0 5009020.0 4788270.0 4921150.0 4702930.0 5480730.0 5442810.0 4646920.0 5321450.0 5267260.0 True False 4753379.802769033 5175742.202683464 5462416.795611058 5544167.085423119 5301820.259049986 5101860.035350672 5179520.486746667 4993696.766981631 4010049.9512767405 4931098.9572718395 0.9639595238216168 1.0496123171592109 1.1077483625745717 1.1243268759080964 1.075180260017181 1.0346294161927156 1.0503785325801427 1.0126944947266732 0.8132162801890565 1.0 22.233477774451348 1.4451537645685337 4.736901843697512 0.9051564678613296 1.0599097138108042 0.5041303642644364 0.05887178601616652 0.1450548726767782 6.232070969885074 0.03884581866243869 0.014760503798117637 27.871077862041776 -1.4451537645685337 0.1547532459494746 TQPHHS(ph)TPTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQPHHSTPTK 10 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 T(0.006)QPHHS(0.497)T(0.497)PTK;T(0.007)QPHHS(0.496)T(0.496)PTK 84.289 0.025109 205054000.0 74504.0 90399.0 107326.0 106549.0 100473.0 118488.0 126475.0 56415.0 111184.0 127606.0 True False 74102.87874217251 93407.87606765055 122436.56790568483 120038.09247528495 113267.64099987238 110297.20345075047 120356.92106858116 60624.973769565455 83784.19298927051 119462.07583100688 0.6203046299563698 0.7819040094346507 1.024899048957476 1.004821753182097 0.9481472694322066 0.9232821603299344 1.0074906218676474 0.5074830095479556 0.7013455308427177 1.0 16.866193170516027 -1.1145836251286605 5.484189472051336 1.0000023145049517 0.833945327750118 0.07756038184322045 0.17009238565343793 5.2908156959909516e-06 8.541762130508439e-07 0.18103350688301717 0.04266941167883465 0.07680975412044834 1.1145836251286605 -0.1660569867548337 TQPKARLTDPIPTTETSIAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQPKARLTDPIPTTETSIAPR 21 2 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 0 30.094 0.093288 141740000.0 326830.0 177270.0 147860.0 145430.0 126920.0 203610.0 245750.0 206800.0 477750.0 203400.0 False True 325070.3835942263 183170.32478802206 168677.402777841 163841.4230887262 143082.50968622215 189534.91994638534 233862.13364383334 222232.46610912227 360014.9140220175 190418.83786049875 1.7071335338805795 0.9619338446031953 0.885823087006835 0.8604265467094006 0.7514094261569053 0.9953580332489952 1.2281459979036382 1.167071853846363 1.8906475749304026 1.0 17.538816683878746 1.6803007218617225 2.1859288563810524 1.4376780732175864 1.0104139308928357 0.16695416187452727 0.3239018803362367 0.4218015701082975 4.33249892735288 0.22163713528087423 0.08901582026970639 47.89616286022597 -1.6803007218617225 -0.42726414232475074 TQPNLDNCPFHDQPHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQPNLDNCPFHDQPHLK 17 0 P01034 P01034 CST3 Cystatin-C 0 167.05 1.3124e-09 290920000.0 162430.0 161410.0 166810.0 159350.0 166630.0 200620.0 169690.0 110780.0 210070.0 169200.0 False True 161555.4949276694 166782.43427559466 190295.39806148811 179523.69366147643 187849.34280661217 186751.61160868217 161481.44642124974 119046.96612944188 158301.06329378378 158401.51114059208 1.0199113238526996 1.0529093635196696 1.20134837534844 1.133345839751093 1.1859062546435124 1.178976199557386 1.0194438503678416 0.7515519597775783 0.9993658656026385 1.0 17.273226573141198 1.9917542335870542 7.01226627941338 0.8878411020281352 1.1292308520758345 0.5502154378956439 0.08503318686044652 0.0899313250027122 25.241653260865398 0.034385566372677964 0.023254075155545104 98.11925309133002 -1.9917542335870542 0.24138975004769936 TQPPEDISCIAWNR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQPPEDISCIAWNR 14 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-5;H0Y9T9 D6REX3 SEC31A Protein transport protein Sec31A 0 89.301 0.013977000000000002 0.0 15670.0 18099.0 15517.0 16303.0 17076.0 22755.0 26778.0 17455.0 42041.0 24477.0 False True 15585.63446110066 18701.414273923456 17701.65872381817 18366.95812841575 19250.52738261841 21182.00040950835 25482.645838106077 18757.580734694056 31680.558870538214 22914.85690418601 0.6801541256080691 0.816126164440815 0.7724970222521657 0.8015305618190675 0.8400893561374057 0.924378471926608 1.112057821030992 0.8185772581135989 1.3825335677636683 1.0 14.483995656129412 2.5502244611451435 0.6966806913982091 1.0946433920093492 0.7415962515542062 0.521602311485069 0.13443052233980451 0.6203812855020135 0.6211901704221859 0.10105285840009613 0.08502577236137229 354.99681869814293 -2.5502244611451435 -0.35304714045514307 TQPSMVSNPGSCSDPQPS(ph)PEMKPHSYLDAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQPSMVSNPGSCSDPQPSPEMKPHSYLDAIR 31 1 C9J494;Q9H000-2;Q9H000 C9J494 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 1 TQPSMVSNPGSCSDPQPS(1)PEMKPHSYLDAIR;TQPSMVSNPGSCSDPQPS(0.999)PEMKPHS(0.001)YLDAIR 227.37 1.6902999999999999e-35 510690000.0 214808.0 161608.0 175955.0 166179.0 173015.0 200340.0 204745.0 180301.0 210900.0 191780.0 True False 213651.49759541245 166987.024585901 200727.93457172334 187217.2443612834 195047.4347097521 186490.9673496331 194840.7021481452 193755.97616992652 158926.5209152138 179540.43620888135 1.1899909686464476 0.9300803101069921 1.1180096183914356 1.042758101264 1.0863705069916927 1.038712901046232 1.085219052946174 1.0791773723023959 0.8851851107809225 1.0 17.453949279756287 1.2519856638672726 24.99904135253792 0.9425925554661435 1.0679213455248178 0.36852626588473103 0.06727096308227495 190.74599748480952 355195.67420266126 0.04039799782737756 0.01457422109536877 17.864286035748556 -1.2519856638672726 0.12532879005867426 TQQHYYER ddPTM_BT-474_Trastuzumab_2h_R1 6 TQQHYYER 8 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;;;;; 135.43 0.00083417 1967460000.0 1280821.0 1348520.0 1513065.0 1228199.0 940753.0 1129675.0 1273202.0 1000658.0 1721920.0 1124834.0 False True 1273925.2020485916 1393404.6730024451 1726091.4002032597 1383688.867469921 1060552.3182701115 1051583.2262189118 1211612.3551560356 1075332.181198367 1297575.888545874 1053046.1311011633 1.2097525117123373 1.3232133254650214 1.6391412961161516 1.313986943784701 1.0071280706013315 0.9986107874678559 1.1505786112988807 1.0211634129208558 1.232211818858313 1.0 20.00613720763757 3.3502175366266793 5.076679658152772 1.0693004215398105 1.3973122302991516 0.5992688185957218 0.12229975853385892 0.13934571315735725 5.6411911938432695 0.034399701823688775 0.04684919719396807 2239.842787252605 -3.3502175366266793 0.3280118087593411 TQQHYYERDPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQQHYYERDPK 11 1 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 106.01 0.0014356 411500000.0 453100.0 472780.0 485810.0 554410.0 513170.0 591340.0 603950.0 488000.0 920890.0 606580.0 False True 450660.55994414224 488516.1964984545 554207.8252637816 624598.2491550617 578519.1577031085 550462.0576646301 574734.6311869514 524417.0380137896 693948.9987937947 567867.5450807343 0.7936015429092208 0.8602643358126791 0.9759455881300442 1.0999012966417405 1.018757213217494 0.9693493886613478 1.0120927603024765 0.9234847854163468 1.222026165793883 1.0 19.115194935259176 4.271196827654326 2.7012460253767197 1.0221676786755296 0.8048092860757753 0.5320979987976304 0.07730519579110454 0.21445218410270933 3.0670363907614484 0.01949672973674252 0.06657710693160204 18672.25749003661 -4.271196827654326 -0.2173583925997543 TQQSPISNGS(ph)PELGIK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQQSPISNGSPELGIK 16 0 Q15723-2;Q15723-3;Q15723-1;Q15723 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 TQQSPIS(0.039)NGS(0.961)PELGIK 172.6 2.8116e-12 0.0 150270.0 107920.0 102920.0 114740.0 109140.0 174460.0 153400.0 126420.0 193540.0 150640.0 True False 149460.96301656638 111512.05196098224 117410.24140332323 129266.07223544274 123038.33207653863 162399.99083466595 145979.4559550926 135854.10234775246 145844.66030313174 141026.02623060744 1.0598112065652763 0.7907196631821448 0.8325430740800468 0.9166114630789165 0.8724512443919031 1.1515604259394472 1.0351242239243503 0.9633264580936444 1.0341684028212268 1.0 17.105601909748113 2.7741668063639953 24.733611434691237 1.0285300822636192 0.8864601985103318 0.44069171927663353 0.07969093856216863 499.4462587399267 346936.209192999 0.02419076597909637 0.02565704510841783 594.5204616639486 -2.7741668063639953 -0.14206988375328744 TQQYHK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQQYHK 6 0 Q8WXF1;Q8WXF1-2 Q8WXF1 PSPC1 Paraspeckle component 1 0 ; 110.61 0.028555 606310000.0 1510120.0 1345240.0 1295370.0 1192810.0 1272930.0 868560.0 1411720.0 1477000.0 2059000.0 1613100.0 False True 1501989.6817101054 1390015.5001852487 1477746.836442118 1343819.6236984353 1435030.0902527801 808518.4915703172 1343429.7103058905 1587221.240054031 1551587.039186466 1510150.576955607 0.9945959725009982 0.9204482793943999 0.9785427089139592 0.889858034162072 0.9502562937437231 0.5353893207128078 0.8895998391194752 1.051035085026948 1.027438629540104 1.0 20.52626097701787 1.770859748428513 6.702761903725284 1.028389877247556 0.8746498885863762 0.23020050471602327 0.12240681734823314 0.27194349645614185 31.489517055351833 0.06123629749571702 0.033761145967886416 59.00105107129084 -1.770859748428513 -0.15373998866117977 TQRPADVIFATVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQRPADVIFATVR 13 1 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 ; 171.21 2.3237e-05 582710000.0 590850.0 563170.0 543900.0 528910.0 475820.0 541850.0 591850.0 528460.0 771590.0 598990.0 False True 587668.9292496069 581914.7730065453 620476.3923364505 595869.9517696366 536412.8565939035 504393.1848777018 563219.9544134391 567896.3686655064 581441.9832762916 560761.9453788606 1.04798289914728 1.0377215818619672 1.106488051569273 1.0626076834922462 0.9565785642452852 0.8994782706535568 1.0043833378046327 1.012722730822659 1.0368784616499953 1.0 19.097028922437236 3.252967971462021 24.317474930640465 0.9849083776900607 1.0649007792078888 0.4985623405700278 0.03865504541871497 158.0717672537565 266799.537748107 0.011831160041790122 0.015939592914223723 1790.4738045267495 -3.252967971462021 0.07999240151782816 TQS(ph)APLPQNAQALQHLVIQQQHQQFLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQSAPLPQNAQALQHLVIQQQHQQFLEK 28 0 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 T(0.207)QS(0.793)APLPQNAQALQHLVIQQQHQQFLEK 110.23 0.0011075999999999998 417760000.0 241960.0 131700.0 110300.0 161030.0 152030.0 175050.0 124930.0 142170.0 237590.0 162960.0 True False 240657.31424428293 136083.55488566885 125829.28125521321 181416.38148922226 171390.1193475917 162949.20552337656 118886.65862105442 152779.4473246321 179039.12804289086 152559.75328292497 1.5774626601419535 0.8920016711963299 0.8247868690627758 1.1891496779808113 1.1234294475407645 1.068100872064103 0.7792793057325994 1.0014400524186724 1.1735672363789118 1.0 17.219014890099775 2.4561587390253954 24.992901966775253 0.9752174843666821 1.0958980410361059 0.07490663795049168 0.20867906359809305 708.0760370402596 844210.1529139637 0.07211021878489166 0.06033633543095645 285.863521252588 -2.4561587390253954 0.12068055666942379 TQS(ph)FEIPQPDSGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TQSFEIPQPDSGPR 14 0 A0A1B0GW72;Q96PX9 A0A1B0GW72 PLEKHG4B Pleckstrin homology domain-containing family G member 4B 1 T(0.001)QS(0.999)FEIPQPDSGPR;TQS(1)FEIPQPDSGPR;TQS(1)FEIPQPDSGPR 251.87 3.61e-24 410312000.0 420131.0 411449.0 350509.0 385687.0 356476.0 394377.0 400871.0 386729.0 428729.0 424412.0 True False 417869.0613769425 425143.83123882685 399857.6205211563 434514.93465462147 401871.1056012113 367114.64625360025 381479.3382540678 415588.6817500711 323074.48262427095 397325.66280260624 1.051704182482022 1.070013520496009 1.0063724998297126 1.0935989676319777 1.0114400936665984 0.9239640945014543 0.960117540768035 1.045964861213956 0.8131226167104547 1.0 18.59996245286754 2.985171797339542 6.504641495732532 0.9607402042431464 1.053130129678855 0.4073553042446477 0.0600565833661193 0.17757354911680673 33.40417366249 0.017714351307639126 0.019804602368590198 966.4331030524339 -2.985171797339542 0.09238992543570868 TQS(ph)GNFYTDTLGMAEFR ddPTM_BT-474_Trastuzumab_2h_R1 8 TQSGNFYTDTLGMAEFR 17 0 E9PP16;Q8ND30-3;Q8ND30-2;Q8ND30;H0YDJ2 E9PP16 PPFIBP2 Liprin-beta-2 1 T(0.049)QS(0.951)GNFYTDTLGMAEFR;T(0.04)QS(0.959)GNFYT(0.001)DTLGMAEFR;T(0.002)QS(0.998)GNFYTDTLGMAEFR;TQS(1)GNFYTDTLGMAEFR;T(0.003)QS(0.997)GNFYTDTLGMAEFR;T(0.398)QS(0.602)GNFYTDTLGMAEFR;T(0.248)QS(0.752)GNFYTDTLGMAEFR;T(0.078)QS(0.922)GNFYTDTLGMAEFR 318.99 6.218499999999998e-72 2225262000.0 1805642.0 1382594.0 1295164.0 1564675.0 1287067.0 1455259.0 1281549.0 1195055.0 1807158.0 1578743.0 True False 1795920.6240976867 1428612.8054942784 1477511.8334327035 1762762.694570257 1450967.3534062163 1354660.3706412092 1219555.5788773992 1284236.0724663292 1361808.125576558 1477986.2701101152 1.2151131985575783 0.9665940979193547 0.9996789979128992 1.1926786670615859 0.9817191016924088 0.9165581562136448 0.8251467578156447 0.8689093386304929 0.9213943005540225 1.0 20.495201436821734 2.917324590937511 3.351586901372336 0.8894305021740639 1.0787289081480838 0.5139279100397222 0.08380479990288717 0.1948506929059619 4.200331824207851 0.025990822717771332 0.028523725811261735 826.6555596700613 -2.917324590937511 0.1892984059740198 TQS(ph)GSSLSLASAATTEPESVHSGGTPSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQSGSSLSLASAATTEPESVHSGGTPSQR 29 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 T(0.18)QS(0.365)GS(0.365)S(0.069)LS(0.014)LAS(0.007)AATTEPESVHSGGTPSQR 60.303 0.0012672 0.0 29793.0 30152.0 27223.0 28086.0 29326.0 29002.0 30951.0 24401.0 33390.0 29708.0 True False 29632.59779831347 31155.591092731094 31055.76177344217 31641.684720277524 33060.492271179886 26997.16000336458 29453.78188569801 26221.926525767376 25161.481903077245 27812.01000570159 1.065460489631589 1.1202207638478503 1.1166313318266314 1.1376985954553747 1.1887127994129993 0.9707015062136839 1.0590310401750842 0.9428274518954854 0.9046984341627601 1.0 14.763420393218892 2.394116191531742 1.5837506905364565 0.9567154924035558 1.1234000943579225 0.6523617082829996 0.052075068301810384 0.22848809803700398 1.1607004035428201 0.025324729786628163 0.01796921113974938 247.80849580053408 -2.394116191531742 0.16668460195436674 TQS(ph)LSALPK ddPTM_BT-474_Trastuzumab_2h_R1 5 TQSLSALPK 9 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 T(0.061)QS(0.912)LS(0.027)ALPK;T(0.01)QS(0.961)LS(0.028)ALPK;TQS(0.997)LS(0.003)ALPK;T(0.007)QS(0.989)LS(0.003)ALPK;TQS(0.994)LS(0.005)ALPK 149.93 9.0678e-05 2012872000.0 4473180.0 2510200.0 2339172.0 2474930.0 2037801.0 2824860.0 2540310.0 2783550.0 4595760.0 3113340.0 True False 4449096.895897018 2593750.489552058 2668507.0851524947 2788255.8842397137 2297302.8783571776 2629584.077205172 2417425.500373415 2991272.635580497 3463196.5280289366 2914643.975735522 1.5264632431733864 0.8899030245700985 0.9155516445122895 0.9566368679852524 0.7881933085077549 0.9021973520939504 0.8294067887874259 1.0262909159687805 1.188205680302681 1.0 21.47488823806391 4.741367092840711 24.840988600514244 0.9371050928519014 1.5264634760128484 0.7295255169420035 0.1063144730468752 125.71594389575337 1112686.0865065812 0.026025501847782746 0.18184799091669118 55127.347032029 -4.741367092840711 0.589358383160947 TQS(ph)PEFEAQSSK ddPTM_BT-474_Trastuzumab_2h_R1 6 TQSPEFEAQSSK 12 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK 327.29 4.8593e-58 3389710000.0 3587585.0 3063129.0 2930700.0 2738977.0 2974172.0 3684316.0 3739716.0 3245288.0 4503866.0 3397930.0 True False 3568269.8409781675 3165083.397064416 3343317.0858989474 3085731.207366365 3352915.1749014403 3429627.9068669826 3558811.649977548 3487467.8697985588 3393948.5730124274 3181071.1982857687 1.1217195776382038 0.9949740825574831 1.0510035385880738 0.9700289666667061 1.0540207891946196 1.0781361664319733 1.1187463052997173 1.0963187091436062 1.0669200283355416 1.0 21.601081231759377 2.879024567210183 4.077966048342455 1.0830979974700388 1.0308966391084204 0.09514499418435052 0.04733735543432642 0.3602387555644573 10.199578904046604 0.014072640014072001 0.015111835930771287 756.8757088247023 -2.879024567210183 -0.05220135836161832 TQS(ph)PGGCSAEAVLAR ddPTM_BT-474_Trastuzumab_2h_R1 5 TQSPGGCSAEAVLAR 15 0 Q96MH2;K7ESM2;K7ELS4;K7EJA3;K7ERG7 Q96MH2 HEXIM2 Protein HEXIM2 1 TQS(1)PGGCSAEAVLAR;TQS(1)PGGCSAEAVLAR;TQS(1)PGGCSAEAVLAR;TQS(1)PGGCSAEAVLAR;T(0.011)QS(0.987)PGGCS(0.003)AEAVLAR 302.9 1.9837e-44 3533510000.0 1262497.0 1293460.0 1137593.0 1105565.0 1201888.0 1357415.0 1340111.0 1159082.0 1425462.0 1276506.0 True False 1255699.8564286022 1336512.0341869188 1297756.2062643855 1245529.415643868 1354941.312651704 1263580.0960612057 1275284.7112088348 1245578.5845391387 1074175.9903121975 1195038.2942082314 1.0507611869128948 1.1183842732608165 1.085953657346361 1.0422506305281953 1.133805769420482 1.0573553183903504 1.0671496615543776 1.0422917747287694 0.8988632377039342 1.0 20.188625418475073 1.4306966590881174 3.94594822703065 0.95046449152399 1.0796983727055571 0.6671435453859125 0.035938158350840896 0.11438197118549902 3.1702461098362598 0.02418403758502704 0.008636462479760394 26.958558049763422 -1.4306966590881174 0.1292338811815671 TQS(ph)VEITK ddPTM_BT-474_Trastuzumab_2h_R1 4 TQSVEITK 8 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 T(0.003)QS(0.997)VEITK;TQS(1)VEITK;TQS(1)VEITK;T(0.001)QS(0.999)VEITK 167.11 0.00032993 2427610000.0 4681000.0 3283900.0 2652970.0 3098430.0 2405790.0 3443230.0 3240710.0 3193990.0 5062900.0 4045620.0 True False 4655798.016107995 3393202.626340527 3026485.1159713785 3490690.9203108167 2712153.096265493 3205207.614591576 3083944.476585581 3432341.7525525913 3815216.1343842414 3787425.0679704593 1.2292779216891185 0.8959128076318137 0.7990877869943338 0.9216528004292237 0.7160941926486312 0.8462761789526646 0.8142588754206436 0.9062467747756277 1.00733772046048 1.0 21.852785915299386 4.734024366184582 4.526227983458898 0.8657406251132833 1.2518054423546712 0.602091096435603 0.08530013622257616 0.11890502035687038 6.294472794727098 0.019865345709711435 0.1456443277472338 54203.13003303081 -4.734024366184582 0.38606481724138786 TQSAS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQSASPPPK 9 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 TQS(0.009)AS(0.991)PPPK;TQS(0.007)AS(0.993)PPPK 94.538 0.005739800000000001 0.0 680210.0 586560.0 529420.0 476870.0 495440.0 583060.0 630310.0 633300.0 730210.0 612100.0 True False 676547.824938435 606083.2950169931 603957.7341988665 537241.6931054175 558531.3472970525 542754.4345756068 599819.4972819716 680560.061832239 550259.529812699 573035.2539548248 1.1806390972792935 1.0576719160541799 1.0539626140462197 0.9375368956754814 0.9746893292207189 0.947157144049631 1.0467410044012029 1.1876408251243318 0.9602542356950322 1.0 19.12826437282781 4.796076524824432 1.967821051977338 1.0240597040922905 1.2423213450611765 0.3371434451689099 0.06964984266206706 1.3184501328183085 4.820924269796654 0.020665229534848735 0.5470518609880951 62528.28609857962 -4.796076524824432 0.218261640968886 TQSAS(ph)PPPKER ddPTM_BT-474_Trastuzumab_2h_R1 1 TQSASPPPKER 11 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 T(0.001)QS(0.042)AS(0.957)PPPKER 57.788 0.066885 617910000.0 762430.0 724580.0 680820.0 622880.0 642150.0 746260.0 783540.0 775010.0 942180.0 861400.0 True False 758325.1615939365 748697.2072821409 776673.5382064772 701736.5441346751 723923.9961787553 694672.8027070838 745637.1767865281 832845.1816210398 709992.3635651784 806424.714518356 0.9403545649600442 0.9284155033979912 0.9631073108546183 0.870182338786322 0.8976956970014555 0.8614230072573892 0.9246209390195416 1.0327624719667274 0.8804198963436125 1.0 19.621180328263105 -1.00568980618002 4.538680195052823 1.0000022286727175 0.9274057398439451 0.18287442169318013 0.04823866162613101 1.1839021789603019e-06 2.5932760869093985e-07 0.050826930076365705 0.01197965457182248 0.09869841850866858 1.00568980618002 -0.07259648882877234 TQSEESRPQSLQQPATSTTETPAS(ph)PAHTTPQTQSTSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGR 38 1 B8ZZU6;E9PBF9;P15336-5;P15336;P15336-4;F5H629;P15336-2 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 TQSEESRPQSLQQPATSTTETPAS(0.994)PAHT(0.005)T(0.001)PQTQSTSGR 129.42 7.1724e-09 1106000000.0 85588.0 113430.0 109800.0 129640.0 123000.0 142520.0 153630.0 125180.0 113340.0 124940.0 True False 85127.20371772071 117205.44898011716 125258.8856012913 146052.41070771136 138663.3209218826 132667.92785599345 146198.32997640746 134521.56725116 85408.87567819035 116966.22223348444 0.7277930507817236 1.0020452635133859 1.0708979328344324 1.2486716927231003 1.1854988412388585 1.1342413674878353 1.249919226121288 1.1500890144389901 0.7302011986648567 1.0 16.8357324396994 4.729796727780176 1.865212233813225 1.121886198209763 0.6077669400549877 0.36439319700436645 0.14399955760822886 0.8090697486538436 2.9441583219791156 0.03681214935535924 0.7218418581249465 53678.04966029548 -4.729796727780176 -0.5141192581547753 TQSPCFGDDDPAKKEPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TQSPCFGDDDPAKKEPR 17 2 Q12765;Q12765-2;Q12765-3 Q12765 SCRN1 Secernin-1 0 ;; 220.64 2.2165e-15 3193100000.0 1726700.0 1345950.0 1326192.0 1205057.0 1103531.0 1801830.0 1818530.0 1597840.0 2959950.0 1642140.0 False True 1717403.639054403 1390749.132106042 1512908.306132492 1357617.0926427217 1244059.1317093144 1677273.7331515902 1730560.7564407736 1717078.934467116 2230509.983797947 1537337.219293215 1.1171287714246407 0.9046480594188916 0.984109593618013 0.8830964837154472 0.8092298268048606 1.0910252559439824 1.1256871522543326 1.1169175590873526 1.4508918120276926 1.0 20.552002228328153 2.5009293825164556 3.9720159378638704 1.170447339381214 0.9366297661643835 0.42052963995203774 0.12982837301017378 0.21368588652798373 7.511018885759127 0.044184284863249206 0.03919124226123985 316.9052124509289 -2.5009293825164556 -0.2338175732168305 TQSRPGGPPNPPGPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQSRPGGPPNPPGPSPK 17 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 TQSRPGGPPNPPGPS(1)PK 72.771 0.016766 326290000.0 178110.0 124020.0 105090.0 111110.0 96362.0 174220.0 164270.0 139000.0 251590.0 170380.0 True False 177151.07554988112 128147.93072832677 119885.75854134506 125176.51460763493 108633.12951767833 162176.58146976674 156323.63252766037 149372.88582769816 189589.0156332794 159506.20253034338 1.1106218613422327 0.8034040601270586 0.7516056218474564 0.7847752163983855 0.6810589669515372 1.0167415366741952 0.9800473589603667 0.9364707043243818 1.1885996445637483 1.0 17.28325299990522 2.708510994650422 24.116001237131325 1.0098236922558779 0.8185656687620022 0.39455698608409606 0.12183297376165235 489.88863706451855 393154.09274122014 0.03964447250559447 0.037382807784356625 511.1060180939554 -2.708510994650422 -0.19125802349387566 TQSSSCERDS(ph)PSTSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQSSSCERDSPSTSR 15 1 A0A2U3TZM1;A0A2R8YE77;O14936;A0A2R8YEK3;O14936-6;O14936-2;Q5JS79 A0A2U3TZM1 CASK Peripheral plasma membrane protein CASK 1 TQSSSCERDS(0.879)PS(0.119)T(0.001)SR;TQSSSCERDS(0.997)PS(0.002)TSR 144.72 2.5357e-06 291340000.0 153100.0 167410.0 159660.0 163886.0 161831.0 172972.0 171001.0 162989.0 171613.0 151273.0 True False 152275.7266110092 172982.1406485179 182138.74021040203 184633.95079638984 182439.21860251337 161014.852772291 162729.0283427432 175152.0668213719 129321.27564638495 141618.62762866885 1.0752520989702272 1.2214646021149544 1.2861213475954516 1.3037405734541456 1.2882430910210354 1.1369609737673776 1.1490651411297874 1.2367869238263587 0.9131657170515155 1.0 17.111651515422754 1.2415846331110414 24.999900350185925 0.9565827876736561 1.215881672640725 0.6650656000470874 0.07252372397583642 43.22805181261501 357396.6829456527 0.05577295388403177 0.018390282639414782 17.441532161028874 -1.2415846331110414 0.259298884967069 TQT(ph)EVCWKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTEVCWKR 9 1 M0QZQ7 M0QZQ7 CGRRF1 1 T(0.087)QT(0.913)EVCWKR 49.5 0.098095 491640000.0 445520.0 688910.0 630030.0 690770.0 735560.0 471400.0 580680.0 576130.0 444170.0 668750.0 True False 443121.36982192507 711839.952895111 718732.74768107 778221.4111737562 829229.2059943074 438813.2275562399 552590.289986983 619123.7461288613 334710.25507307047 626069.8024543199 0.7077826914583645 1.136997743869062 1.148007370525607 1.243026589244476 1.3244996049059732 0.7009014423567524 0.8826336741058548 0.9889053004980777 0.5346213054214383 1.0 19.25596399108448 2.7307076565490114 24.981343944379642 0.8398554992145497 1.1227207631424627 0.34861651808388905 0.1975786724737225 713.105593346734 2268481.622176081 0.06370572280009765 0.06106720564941744 537.9075704660822 -2.7307076565490114 0.282865263927913 TQT(ph)PPLGQTPQLGLK ddPTM_BT-474_Trastuzumab_2h_R1 7 TQTPPLGQTPQLGLK 15 0 D3DQV9;P78344;H0Y3P2;P78344-2;E9PKF8 D3DQV9 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 TQT(1)PPLGQTPQLGLK;T(0.009)QT(0.991)PPLGQTPQLGLK;T(0.03)QT(0.97)PPLGQTPQLGLK;T(0.046)QT(0.954)PPLGQTPQLGLK;T(0.157)QT(0.843)PPLGQTPQLGLK;T(0.038)QT(0.962)PPLGQTPQLGLK;T(0.018)QT(0.982)PPLGQTPQLGLK 213.98 1.0951e-09 12123320000.0 7005050.0 5111280.0 4937160.0 4681550.0 5149630.0 6995360.0 7272340.0 6747740.0 10423930.0 7984900.0 True False 6967335.5891342275 5281405.864965987 5632269.213435978 5274233.749989865 5805404.856251662 6511787.228506191 6920549.131163354 7251290.623129444 7855092.125005803 7475296.8457831815 0.9320480153325957 0.7065145336596541 0.7534509103291521 0.7055550914964752 0.776611949467464 0.8711075108916234 0.9257892059587225 0.9700338023659757 1.0508067153797196 1.0 22.833699439529376 2.232042227662869 1.2968913130205857 1.0124946848245555 0.764532051625602 0.7259015485437603 0.06252562787758086 0.22555294397645456 0.7354640461520231 0.03857900984072329 0.022076269655457403 170.62482842138118 -2.232042227662869 -0.2479626331989535 TQT(ph)PPVS(ph)PAPQPTEER ddPTM_BT-474_Trastuzumab_2h_R1 8 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.043)QT(0.957)PPVS(1)PAPQPTEER;TQT(1)PPVS(1)PAPQPTEER;TQT(1)PPVS(1)PAPQPTEER;TQT(1)PPVS(1)PAPQPTEER;T(0.048)QT(0.952)PPVS(1)PAPQPTEER;T(0.08)QT(0.92)PPVS(1)PAPQPTEER;T(0.005)QT(0.995)PPVS(1)PAPQPTEER;T(0.058)QT(0.942)PPVS(1)PAPQPTEER 292.02 7.8648e-45 18995520000.0 7161620.0 6197770.0 6081760.0 6006930.0 5897280.0 6207700.0 5469270.0 5376890.0 5882340.0 5246410.0 True False 7123062.633650788 6404059.027818916 6938018.944394427 6767406.722095588 6648263.652082925 5778576.310353984 5204700.515459648 5778140.835094186 4432716.126317683 4911579.622122424 1.450259016787093 1.3038695329246344 1.4125840316513745 1.377847300207507 1.3535897132031087 1.1765209474211695 1.0596795564540924 1.1764322844464645 0.9025031593404544 1.0 22.227755656287872 2.3852058982318995 0.8574714693511984 0.9995713900333904 1.3999582512012374 0.8449100601499602 0.0702914070764436 0.23637927171055445 0.3422348169307932 0.0518378320662639 0.0342973382047444 242.77608193158406 -2.3852058982318995 0.40038686116784705 TQT(ph)PPVS(ph)PAPQPTEERLPSSPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 3 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.004)QT(0.996)PPVS(0.564)PAPQPT(0.134)EERLPS(0.206)S(0.095)PVYEDAASFK;T(0.072)QT(0.928)PPVS(0.95)PAPQPT(0.05)EERLPSSPVYEDAASFK;T(0.153)QT(0.847)PPVS(0.886)PAPQPT(0.085)EERLPS(0.015)S(0.014)PVYEDAASFK 231.9 2.364e-35 5274370000.0 800128.0 766619.0 700319.0 699476.0 660202.0 922579.0 857741.0 794405.0 1190860.0 846722.0 True False 795820.1997505777 792135.4499840289 798917.8279181294 788029.5898811105 744274.8113761676 858803.2852473647 816248.7909411815 853687.5350068532 897388.509706456 792683.4770448247 1.0039570935897981 0.9993086432647255 1.0078648679502527 0.9941289464225188 0.9389306487765737 1.08341262321884 1.029728529203371 1.0769589120104477 1.1320893341336928 1.0 19.59638537913492 2.7211107418617195 24.994295224218156 1.0668643518101013 0.990770723447249 0.5093463352427491 0.03703729833465514 666.6906143748619 954931.1570181947 0.011680343157800002 0.011034011471773776 526.1514139826414 -2.7211107418617195 -0.07609362836285227 TQT(ph)PPVSPAPQPTEER ddPTM_BT-474_Trastuzumab_2h_R1 6 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 T(0.004)QT(0.996)PPVSPAPQPTEER;T(0.002)QT(0.998)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER;TQT(0.999)PPVSPAPQPTEER 212.35 5.2873000000000014e-11 5571410000.0 989501.0 938487.0 1006550.0 828374.0 918600.0 1024018.0 991996.0 978991.0 1014810.0 1050117.0 True False 984173.6365598965 969723.9724676277 1148263.4909105632 933246.0634649 1035578.2650312287 953230.0459390866 944009.3636872751 1052048.2796355684 764723.6732573174 983097.634009604 1.0010945022275193 0.9863964055254296 1.1680055481644518 0.9492913330068934 1.053382928822217 0.9696188994487748 0.960239686303683 1.070136111857727 0.7778715427666737 1.0 19.906975175953686 1.256092170745055 24.99982135970755 0.8889356449893697 1.0202110989109165 0.3036634324301706 0.07924726162626415 232.81818949415722 331998.7724217978 0.049302011282342934 0.017913689186248874 18.034004376967392 -1.256092170745055 0.13127545392154683 TQT(ph)PPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.001)QT(0.999)PPVS(0.005)PAPQPT(0.003)EERLPS(0.545)S(0.447)PVYEDAASFK;T(0.215)QT(0.785)PPVS(0.205)PAPQPT(0.076)EERLPS(0.376)S(0.341)PVY(0.002)EDAAS(0.001)FK 205.35 3.2758999999999996e-25 1834300000.0 462545.0 449040.0 405375.0 377597.0 438398.0 568350.0 494564.0 469378.0 704280.0 483900.0 True False 460054.709113581 463986.0249495876 462448.27641733584 425400.74148410786 494225.3867114745 529061.3022519919 470640.0499020504 504405.3698131895 530719.6308685007 453017.08771236707 1.0155350020829288 1.0242130761393817 1.0208186158111476 0.9390390628139096 1.0909641161820185 1.1678616913186008 1.038901318885509 1.1134356374067953 1.1715223228079845 1.0 18.789205943898047 3.113042117471055 7.930407583573154 1.1036908131560594 1.0034154042643837 0.43868321802863164 0.053673973645799275 0.2107875700641915 13.877603233244082 0.01486456442063025 0.017803439784038536 1297.3050763117556 -3.113042117471055 -0.10027540889167574 TQTGDS(ph)SSISSFSYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQTGDSSSISSFSYR 15 0 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6;Q4V328-2;Q4V328-3 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 1 TQTGDS(0.949)S(0.047)S(0.004)ISSFSYR;TQTGDS(0.975)S(0.006)S(0.019)ISSFSYR 311.43 3.777899999999999e-56 429940000.0 353690.0 382000.0 387160.0 336930.0 406080.0 458140.0 441540.0 414250.0 508560.0 416610.0 True False 351785.77233865304 394714.63907612336 441668.76274495333 379585.30345378845 457791.88097526826 426469.86014555703 420181.0233534006 445163.43851887767 383232.2023548659 390021.59312223434 0.9019648617977979 1.0120327849448536 1.1324213082903145 0.9732417644241171 1.1737603482681904 1.0934519207809597 1.077327590992415 1.1413815193031163 0.9825922695381621 1.0 18.57319447386809 4.600257969435935 2.9970143362409516 1.0811242019096354 0.8954366396389605 0.3739561998576083 0.06590180132797731 0.27378837537456485 3.9865833533390487 0.015146824942218981 0.1007082180266244 39834.371509670644 -4.600257969435935 -0.18568756227067496 TQTGDSSS(ph)ISSFSYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQTGDSSSISSFSYR 15 0 Q4V328-4;Q4V328;A0A087WT45;A0A087WXA6;Q4V328-2;Q4V328-3 Q4V328-4 GRIPAP1 GRIP1-associated protein 1 1 TQTGDSS(0.272)S(0.726)IS(0.001)SFSYR;TQTGDSS(0.052)S(0.945)IS(0.002)SFSYR 355.72 1.5365e-82 976480000.0 1142410.0 956540.0 910500.0 1020320.0 859670.0 1039790.0 984750.0 988490.0 1385250.0 1168630.0 True False 1136259.3914936844 988377.8556593584 1038690.4857921288 1149492.4073842345 969143.8788367045 967911.7647023802 937113.8803896838 1062256.1432505145 1043873.6988990046 1094047.0328855198 1.0385836781594577 0.9034144108526471 0.949402040836042 1.0506791507422482 0.885833835023174 0.884707636516813 0.8565572157515668 0.9709419351459163 0.9541396919160008 1.0 20.06124332998861 4.750918445920368 23.897390739299812 0.9367600323421991 1.0385837967527258 0.21790576106255066 0.056084300978349766 1658.7151480788932 3207489.1684304173 0.013663735938800175 0.2270476973754978 56353.18229487347 -4.750918445920368 0.10182376441052676 TQTPNRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTPNRK 7 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 81.958 0.041353 202220000.0 153620.0 146020.0 129900.0 132470.0 126560.0 116790.0 184480.0 154920.0 240850.0 185120.0 False True 152792.92698878667 150880.1874290459 148188.79088895913 149240.68841754508 142676.66582010937 108716.5821940882 175555.99761796274 166480.91706782035 181495.74472465276 173305.48311079436 0.8816393125375381 0.8706025032836847 0.8550727203144629 0.8611423351339401 0.8232668883816909 0.6273118440493056 1.0129858240303315 0.9606211764309208 1.0472591026368299 1.0 17.402957774241376 TQTPPVS(ph)PAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.019)QT(0.106)PPVS(0.875)PAPQPT(0.694)EERLPS(0.123)S(0.182)PVY(0.001)EDAASFK 170.44 2.5962e-11 79058000.0 57823.0 49863.0 51076.0 47039.0 47968.0 66555.0 55794.0 52507.0 83388.0 51755.0 True False 57511.68739273927 51522.65981217998 58267.05683944948 52994.13257698267 54076.440471389076 61954.209503618054 53095.03106622194 56425.33896514352 62838.144741952805 48451.95159031524 1.1869839192243172 1.063376357836503 1.2025739919028589 1.0937460894263615 1.1160838458816194 1.2786731487612915 1.0958285337021343 1.1645627701902936 1.2969166912672538 1.0 15.564267156499719 TQTPPVS(ph)PAPQPTEER ddPTM_BT-474_Trastuzumab_2h_R1 2 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 TQTPPVS(1)PAPQPTEER;TQTPPVS(1)PAPQPTEER 290.77 1.6782e-45 798340000.0 394350.0 423840.0 419420.0 375000.0 402480.0 443490.0 393100.0 353100.0 352810.0 374530.0 True False 392226.8634164036 437947.2581833097 478470.6903360072 422474.96155038424 453733.4423141401 412832.5801631662 374084.25121217046 379450.1150054692 265864.7029117906 350627.1747487351 1.118643652470689 1.2490396915103614 1.364613825722113 1.2049122029778108 1.2940623973007583 1.177411820572688 1.0669003378880861 1.0822039543209652 0.7582546991753089 1.0 18.41957828843485 1.8430052899696643 1.251528161271551 0.9028516654235109 1.2489787523184284 0.6776437776166575 0.092504478222351 0.25021235525202745 0.7284133744587199 0.07097285814013254 0.029540147802272845 69.66349994950511 -1.8430052899696643 0.34612708689491745 TQTPPVS(ph)PAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 2 T(0.064)QT(0.293)PPVS(0.643)PAPQPTEERLPS(0.11)S(0.89)PVY(0.001)EDAASFK 157.15 1.5800999999999995e-09 196090000.0 111620.0 138170.0 128920.0 123640.0 129060.0 156490.0 140830.0 138900.0 165880.0 138430.0 True False 111019.05032214773 142768.9049244712 147070.8154072719 139292.81132290527 145495.02600144836 145672.2146378361 134017.51487715592 149265.4233199085 125001.09667812091 129595.27888411435 0.8566596814180422 1.1016520520947128 1.1348470150581982 1.0748293650995 1.1226877032422744 1.124054949317235 1.0341234343651977 1.15178133497736 0.964549771831568 1.0 16.983653636682977 4.740528044145331 24.855197213841528 1.0886068971920333 0.8566595957593642 0.5533316264232109 0.059259617201647186 106.96027341453131 1351159.1432080378 0.012868997791799567 0.08443457217869896 55020.94486055893 -4.740528044145331 -0.23194730143266906 TQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 TQTPPVSPAPQPTEERLPS(0.638)S(0.362)PVYEDAASFK;TQTPPVS(0.012)PAPQPT(0.148)EERLPS(0.659)S(0.179)PVY(0.001)EDAASFK 272.69 1.7827999999999991e-71 2922000000.0 627801.0 660791.0 604155.0 573837.0 655041.0 836734.0 866964.0 769407.0 1148313.0 908061.0 True False 624420.9891712477 682785.0289784058 689214.7725906024 646484.7053631669 738456.588617811 778892.5480399712 825025.6391958997 826824.0573095822 865326.6477558659 850107.7695498648 0.7345198003564665 0.8031746720065186 0.810738117304285 0.7604738228724611 0.8686623214946341 0.916228007717654 0.9704953521748823 0.9726108699693318 1.0179022928046635 1.0 19.697286220086674 2.7157217079627642 1.0374577263361093 0.9992168938983534 0.7731923848597385 0.9368898069513332 0.024802451620882727 0.115191027931667 0.2601662083135463 0.0132731608307161 0.011998338947982747 519.6628944645719 -2.7157217079627642 -0.22602450903861493 TQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_BT-474_Trastuzumab_2h_R1 7 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YCD9;H0YEV2 Q14247 CTTN Src substrate cortactin 1 TQTPPVSPAPQPTEERLPS(0.252)S(0.748)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.256)S(0.743)PVYEDAASFK;TQTPPVSPAPQPT(0.007)EERLPS(0.237)S(0.709)PVY(0.046)EDAASFK;TQTPPVSPAPQPTEERLPS(0.068)S(0.932)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.04)S(0.96)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.427)S(0.573)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.289)S(0.711)PVYEDAASFK 316.05 1.247099999999999e-92 38444940000.0 7463985.0 7849543.0 7351992.0 7569921.0 7651694.0 9640874.0 10226263.0 9730448.0 13784110.0 10666046.0 True False 7423799.734086689 8110810.293606048 8387088.568939971 8528272.222438512 8626091.875756444 8974423.072556285 9731579.590571662 10456583.439973773 10387200.788111003 9985329.8126186 0.7434706587963804 0.8122726485565158 0.839941066177012 0.8540801738627818 0.8638765106041397 0.8987608061994289 0.9745876974713173 1.0471945980952622 1.040246139389863 1.0 23.251378649589427 2.5109176327081197 0.844318149104637 1.0460501293061104 0.7992530534240037 0.9105204069927076 0.02924217676873517 0.16771688466105683 0.24306918829821303 0.0215570450539224 0.016090147782173016 324.27810967689805 -2.5109176327081197 -0.24679707588210675 TQTPQLHFLDT(ph)DDEVSPTSWGDSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TQTPQLHFLDTDDEVSPTSWGDSR 24 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 TQTPQLHFLDT(1)DDEVSPTSWGDSR;TQTPQLHFLDT(1)DDEVSPTSWGDSR 186.39 7.8586e-17 226186000.0 99064.0 99292.0 109317.0 96851.0 91599.0 131668.0 129847.0 107413.0 160001.0 116545.0 True False 98530.65043104514 102596.87419671848 124707.88339960243 109112.32666964328 103263.589700191 122566.1010731332 123565.80454629027 115428.70349216211 120570.89745355684 109106.99832080543 0.9030644408467472 0.9403326622097572 1.1429870248370868 1.0000488359951227 0.9464433197636585 1.123356915316781 1.1325195124786758 1.0579404187508585 1.105070245806271 1.0 16.73538411614335 2.733965752420245 24.99470363458781 1.0889050892610164 0.9934442981920186 0.32718008017002576 0.06915091627953165 500.3960407219707 2721998.630583956 0.02268271216756606 0.0220463909204694 541.9581509986969 -2.733965752420245 -0.09546079106899774 TQTPQLHFLDTDDEVS(ph)PTSWGDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TQTPQLHFLDTDDEVSPTSWGDSR 24 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 TQTPQLHFLDTDDEVS(0.773)PT(0.182)S(0.044)WGDS(0.001)R;TQTPQLHFLDTDDEVS(0.995)PT(0.005)SWGDSR;TQTPQLHFLDTDDEVS(0.998)PT(0.002)SWGDSR 240.19 1.0026e-37 312289000.0 221174.0 244459.0 246920.0 263168.0 259933.0 212181.0 232799.0 185335.0 184993.0 222375.0 True False 219983.22375874166 252595.6700364136 281684.1897328852 296485.0418167772 293033.92680640373 197513.42689034872 221537.62299145779 199165.6388120609 139403.95392919928 208182.83711518408 1.0566828025166581 1.2133357078646048 1.353061537810795 1.4241569858745704 1.4075796586645275 0.9487498087129432 1.0641493125049724 0.9566861590125505 0.6696227021446028 1.0 17.66749161017577 2.725820895411032 23.670617383889617 0.9391979045351457 1.2975002318891935 0.635350757362289 0.13736841234899336 262.9402648333536 488546.1740824802 0.04684412644615915 0.04447498010996332 531.8888611715397 -2.725820895411032 0.35830232735404777 TQVLS(ph)PDSLFTAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TQVLSPDSLFTAK 13 0 P55196-5;P55196;J3KN01;A8MQ02;H0Y8L4;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 TQVLS(1)PDSLFTAK;TQVLS(1)PDSLFTAK 239.58 8.5432e-17 61552000.0 176238.0 164915.0 154364.0 154972.0 160185.0 196613.0 185949.0 157800.0 238520.0 185036.0 True False 175289.15418988263 170404.0960817771 176097.10944405955 174591.43931036277 180583.61025911992 183021.6060872188 176953.93647583792 169575.83729216392 179739.94200425225 173226.84406271012 1.011905257169183 0.9837049044205229 1.0165694029518333 1.0078775045232518 1.0424689731907057 1.0565429802609743 1.021515674624763 0.9789235508485943 1.037598664206942 1.0 17.402302988769762 4.108806589924439 7.798206266012239 1.0192116291494684 0.9979034439686403 0.14294305535763174 0.021902189878923065 0.4918157327369924 32.06224538329724 0.0060058556372149605 0.013087245916265578 12847.143937619263 -4.108806589924439 -0.02130818518082811 TRAEDEGDLDTNSWPAPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TRAEDEGDLDTNSWPAPNK 19 1 Q8ND04;Q8ND04-2 Q8ND04 SMG8 Protein SMG8 0 ; 212.35 7.8805e-17 403650000.0 726270.0 710750.0 673290.0 664550.0 681670.0 850890.0 820570.0 791100.0 1068260.0 900270.0 False True 722359.8430161832 734406.8840925527 768083.3796584094 748681.9618621535 768476.6339253633 792069.9770796109 780875.8942181915 850135.8991244038 805001.6369506232 842813.9978400747 0.8570809750044661 0.8713748062735754 0.9113320158739869 0.8883122062291816 0.9117986126177071 0.9397921476262755 0.926510352485109 1.0086874462254938 0.9551355803458945 1.0 19.684854749729617 2.6053720790932076 0.48651285146240747 1.0029271659096355 0.8598724588716891 0.8272042204434591 0.019898119313153488 0.39867046303388554 0.19644649940693626 0.018402597453191213 0.022176527626049103 403.06220747843486 -2.6053720790932076 -0.14305470703794643 TRAS(ph)LPVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRASLPVVR 9 1 Q5T5P2;Q5T5P2-7;Q5T5P2-9;Q5T5P2-2;Q5T5P2-10;Q5T5P1;Q5T5P0 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 T(0.135)RAS(0.865)LPVVR 81.709 0.019565 0.0 129340.0 77934.0 86704.0 90464.0 80803.0 90055.0 86225.0 93062.0 112870.0 104980.0 True False 128643.64781102477 80527.98607790223 98911.16955532203 101916.73312451711 91092.78309309648 83829.70981666778 82053.96733851288 100006.75899926072 85054.70088051292 98280.08652210009 1.308949273076768 0.8193723563704233 1.006421270631259 1.0370028836065306 0.9268691788606901 0.8529673994315942 0.8348992175547336 1.0175688945570105 0.8654316849974161 1.0 16.58461150734466 4.7493395834893475 24.9519612526884 0.9323861906184535 1.3089494926835523 0.6791388230227156 0.0783263070786745 919.7621844728103 2129092.3683644175 0.018649625625263084 0.27810677040803594 56148.68421555006 -4.7493395834893475 0.3765633020650988 TRDDEPVCGRPLGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRDDEPVCGRPLGIR 15 2 Q9HDC9;H0Y512;Q9HDC9-2 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein 0 ; 214.45 1.3909e-12 367580000.0 57523.0 89922.0 89677.0 76477.0 91143.0 103544.0 88798.0 73666.0 102599.0 94801.0 False True 57213.302559406104 92914.99941100321 102302.74211354267 86158.98035863659 102749.5208031149 96386.24699635833 84502.50149869829 79163.33098836857 77314.85120616427 88750.71901678061 0.6446517075381492 1.0469210890948977 1.1526976146998842 0.970797547480669 1.1577316999954383 1.0860334210715974 0.9521331481576043 0.8919739678210461 0.8711461953513402 1.0 16.437471187141362 -0.32957691552264334 7.7566180904445226 0.9999192352500306 0.9831827550464461 0.0 0.14506393012573965 0.0 0.0 0.1404881507259752 0.03311337468489829 0.4681910252762983 0.32957691552264334 -0.016736480203584425 TRDDGDEEGLLT(ph)HS(ph)EEELEHS(ph)QDTDADDGALQ ddPTM_BT-474_Trastuzumab_2h_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 T(0.001)RDDGDEEGLLT(0.996)HS(0.986)EEELEHS(0.585)QDT(0.432)DADDGALQ 90.832 0.00012892 198120000.0 44288.0 30692.0 27086.0 39347.0 43584.0 41123.0 30931.0 38917.0 43912.0 33499.0 True False 44049.5583288594 31713.564666294187 30899.473364267527 44328.326165661216 49134.1640573929 38280.26380312947 29434.74936210542 41821.18415652181 33090.47599065374 31361.065140063205 1.40459382141925 1.0112400367990266 0.9852813744133326 1.4134828000160162 1.5667249769085452 1.2206302187812847 0.9385762004780587 1.3335383849286417 1.0551451566733057 1.0 14.936686939199992 0.980166279700959 0.8626719142160889 0.9978136236938533 1.239671470837565 0.1377622033104714 0.19714028501985523 1.5394744588928715 2.4989336620038154 0.19755929731933733 0.06980738332425765 9.553582970572895 -0.980166279700959 0.2418578471437116 TRDDGDEEGLLT(ph)HS(ph)EEELEHSQDTDADDGALQ ddPTM_BT-474_Trastuzumab_2h_R1 2 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 2 TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.992)HS(0.973)EEELEHS(0.033)QDT(0.002)DADDGALQ 236.29 3.1707e-35 4731200000.0 916750.0 885490.0 748440.0 789430.0 1112280.0 1164870.0 985610.0 751520.0 1145270.0 966220.0 True False 911814.3198605006 914962.9993599919 853813.8464429006 889371.7570579196 1253922.2649999305 1084345.2787090307 937932.2789041651 807602.238541235 863033.5543317541 904555.0123774393 1.0080252802579488 1.0115061956875318 0.9439048313919838 0.9832146689678789 1.386231072562685 1.1987610083095435 1.0368991007401533 0.8928171614666269 0.9540973655802819 1.0 19.78684872042392 1.9554975728989257 6.741302724591263 0.9428450952103388 1.0897581750708745 0.20455918761512393 0.122937091354181 0.3882078749788301 46.445626654805494 0.05847174226713342 0.036767821410774774 90.26046631543642 -1.9554975728989257 0.1469130798605357 TRDDGDEEGLLTHS(ph)EEELEHSQDTDADDGALQ ddPTM_BT-474_Trastuzumab_2h_R1 8 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 TRDDGDEEGLLT(0.168)HS(0.832)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.142)HS(0.858)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.041)HS(0.77)EEELEHS(0.188)QDT(0.001)DADDGALQ;TRDDGDEEGLLT(0.018)HS(0.975)EEELEHS(0.007)QDTDADDGALQ;TRDDGDEEGLLT(0.129)HS(0.871)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.038)HS(0.962)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.032)HS(0.772)EEELEHS(0.185)QDT(0.011)DADDGALQ;TRDDGDEEGLLT(0.137)HS(0.863)EEELEHSQDTDADDGALQ 320.43 1.2070999999999995e-104 37865370000.0 3422785.0 3237151.0 2728026.0 2863265.0 4106863.0 4007946.0 3308710.0 2746812.0 3605185.0 3432131.0 True False 3404357.1058671623 3344897.614135899 3112108.3483729335 3225754.055422827 4629847.659765896 3730886.1267100573 3148655.056800361 2951793.059468715 2716735.463753981 3213089.46118482 1.0595276437188936 1.0410222480710123 0.9685719572916435 1.003941562907289 1.4409333184450612 1.1611522716003995 0.9799462775117692 0.9186775205382073 0.8455212643697105 1.0 21.615529719262323 2.0730659393125936 4.41595133363782 0.9197435389761159 1.1120805808495582 0.32088634662398463 0.12764526938533383 0.27484878820981995 10.339057144168896 0.05562273721454811 0.039221355302005864 118.3221191600333 -2.0730659393125936 0.19233704187344225 TRDELDQFLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 TRDELDQFLDK 11 1 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ;; 204.01 3.1616e-08 2176070000.0 1935900.0 1809170.0 1617450.0 1557920.0 1551070.0 1840240.0 1954230.0 1921200.0 2708210.0 1961990.0 False True 1925477.3294987115 1869387.1297836401 1845172.900872571 1755152.5122628624 1748589.5705878388 1713028.5402590036 1859696.4290164327 2064569.6996559273 2040807.93365477 1836774.1184558505 1.0482929338733455 1.0177555917192511 1.0045725722789371 0.9555625237894759 0.9519894433496552 0.9326288535136383 1.0124796567690384 1.1240193766403792 1.1110826928302147 1.0 20.808742787923375 1.906646072783837 5.4971703788713855 1.0887295051199772 0.9837347955136952 0.4614575084008429 0.04455066805132717 0.18197315915223183 8.309873428397953 0.02057195216684121 0.012353697292326056 80.65774440387635 -1.906646072783837 -0.10499470960628199 TRDELEVIHLIEEHR ddPTM_BT-474_Trastuzumab_2h_R1 6 TRDELEVIHLIEEHR 15 1 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 ;;;;; 228.51 3.7873000000000004e-13 3291183000.0 988639.0 1275248.0 1171375.0 1179934.0 1091545.0 1219114.0 1272018.0 632606.0 1374541.0 1065056.0 False True 983316.277472118 1317693.8587763063 1336294.4182259808 1329313.5234186426 1230546.7856559034 1134839.5186656716 1210485.6297593543 679814.2720281789 1035803.7884557574 997083.2142396831 0.9861927905605522 1.321548532718106 1.340203504724488 1.33320218857791 1.234146526671042 1.138159285462481 1.2140266855082895 0.6818029451499343 1.0388338442199134 1.0 19.927354388048368 1.7633127172569958 24.999999999998586 0.8791639320466125 1.2334501370829767 0.5379945978484839 0.13369725737402893 9.632604997603405 9735.83632104729 0.060260405132766086 0.03341950394164723 57.98460689980173 -1.7633127172569958 0.3542862050363642 TREEECHFYAGGQVYPGEASR ddPTM_BT-474_Trastuzumab_2h_R1 1 TREEECHFYAGGQVYPGEASR 21 1 Q13162;A6NG45 Q13162 PRDX4 Peroxiredoxin-4 0 175.77 7.6553e-13 800170000.0 203370.0 245220.0 205230.0 187800.0 210740.0 232070.0 241530.0 219980.0 297220.0 235520.0 False True 202275.07851653095 253381.99946137986 234124.6001088615 211575.46074443223 237576.48984615834 216027.54713401909 229846.27116579874 236396.02463580636 223974.11354395372 220488.9119611832 0.9173934268047965 1.1491825017758146 1.0618429653736003 0.959574152108292 1.0774985813707647 0.9797660354551092 1.0424391372853383 1.0721447284270855 1.0158066977235756 1.0 17.750346581190897 TREPLILEEER ddPTM_BT-474_Trastuzumab_2h_R1 1 TREPLILEEER 11 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 0 99.669 0.0041978 113660000.0 63048.0 71685.0 81254.0 73165.0 73201.0 75970.0 76372.0 64783.0 96202.0 75382.0 False True 62708.55657329134 74070.99189050232 92693.85692757127 82427.68149822345 82522.71345368052 70718.37271414418 72677.59459062797 69617.4364214084 72494.30614075589 70571.05622222293 0.8885874738196751 1.0495944917879414 1.313482635652856 1.168009746639825 1.1693563604011072 1.002087491668785 1.02984989145935 0.986487097517548 1.0272526730006248 1.0 16.106788982216717 2.727519913856753 24.138758813998802 1.0082235468717164 1.1276766107069103 0.22062839027505876 0.10126985557159204 708.5406036528427 1549109.1846912287 0.03462798587252531 0.03297415813417593 533.9737574982723 -2.727519913856753 0.11945306383519383 TREPVTDNVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TREPVTDNVEK 11 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 0 ; 103.14 0.0022357 373140000.0 393250.0 343300.0 326410.0 315390.0 337250.0 428990.0 373200.0 397800.0 557760.0 435540.0 False True 391132.78569418204 354726.5329707676 372365.69079341914 355318.3416623351 380196.78846264124 399334.931033838 355146.8902375527 427485.85598747036 420307.52160108945 407743.46431544615 0.9592619377746459 0.8699747856567417 0.913235216212669 0.8714262097588081 0.9324411590531498 0.9793778833568183 0.8710057212904762 1.0484186587887299 1.0308136325538335 1.0 18.637302226725872 1.708369319798251 7.945356207572337 1.0284886227858963 0.9138170505888318 0.6609192702756921 0.03686787602937057 0.06740198350609948 9.706543801832243 0.01764438438336805 0.009310982716185785 51.09393130977395 -1.708369319798251 -0.11467157219706448 TRHGS(ph)ASQVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TRHGSASQVQK 11 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 T(0.215)RHGS(0.784)AS(0.001)QVQK;T(0.002)RHGS(0.997)AS(0.001)QVQK 123.29 0.0002259 52503000.0 41325.0 45412.0 36515.0 31877.0 41514.0 44453.0 53909.0 37452.0 93250.0 59032.0 True False 41102.51079163915 46923.510967866285 41655.99460593031 35912.62493157754 46800.56182724413 41380.06874110631 51301.21571762119 40246.85841740257 70269.78698598247 55264.52722016208 0.7437412904645961 0.8490710647163058 0.7537564637073926 0.6498313970643286 0.846846325868322 0.7487636432002205 0.9282847116966747 0.7282584406642559 1.2715170204214836 1.0 15.754066130815787 1.2466279589705662 24.999999850617378 1.135758540309121 0.7837107126741241 0.6892270304863664 0.09525509773079226 79.87119353876818 247519.4827938811 0.06122985761563553 0.02148864705764802 17.645255813911753 -1.2466279589705662 -0.352047827634997 TRHS(ph)PT(ph)PQQSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 T(0.004)RHS(0.996)PT(1)PQQSNR;T(0.057)RHS(0.944)PT(0.999)PQQSNR 112.03 0.0030194 1656620000.0 587920.0 415420.0 323440.0 394700.0 367080.0 336960.0 379980.0 327300.0 560230.0 434450.0 True False 584754.7040440524 429247.0035733067 368977.54060912254 444668.979530497 413825.46214637934 313666.7483185206 361598.915735438 351724.78799572395 422168.8231973935 406723.02904864197 1.4377221408186325 1.0553791472721625 0.9071960874017654 1.093296783736622 1.017462579176671 0.7712047902775815 0.8890544422361505 0.8647771649872805 1.0379761976716206 1.0 18.633687154328744 7.692391264653589 0.9607830775105279 0.9257903808763092 199.99999173491932 0.7158504737726235 0.09172980407695608 356.64502429333083 1.1364100220257378 0.02880567970957906 155339.03731489377 49248302.37617366 -7.692391264653589 199.074201354043 TRHS(ph)PTPQQSNR ddPTM_BT-474_Trastuzumab_2h_R1 10 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 TRHS(0.989)PT(0.011)PQQSNR;T(0.001)RHS(0.993)PT(0.006)PQQSNR;TRHS(0.963)PT(0.037)PQQSNR;T(0.001)RHS(0.999)PTPQQSNR;TRHS(0.969)PT(0.031)PQQSNR;T(0.003)RHS(0.959)PT(0.038)PQQSNR;TRHS(1)PTPQQSNR;TRHS(0.999)PT(0.001)PQQSNR;T(0.002)RHS(0.996)PT(0.001)PQQSNR;TRHS(0.999)PTPQQSNR 186.29 1.7205999999999998e-05 79252030000.0 16459099.0 17053672.0 17360000.0 15553540.0 17057448.0 16247634.0 17299873.0 11305959.0 19266302.0 15376820.0 True False 16370485.03976181 17621293.163357563 19804137.104175013 17522616.569259603 19229612.895384748 15124473.30439648 16463012.05105737 12149667.071076512 14518380.027320169 14395458.182842072 1.1371979156088112 1.2240869960193668 1.3757212068303277 1.217232292761948 1.335811104526322 1.0506420228029505 1.1436254297678148 0.843993078702954 1.0085389324130445 1.0 23.779110372362236 2.296992867643986 1.5868961202616791 0.947066394717643 1.258103925104791 0.6426852202418422 0.09242103754871869 0.21590683983279 1.0889674221211278 0.04731561154539923 0.030465907484444336 198.1494483738051 -2.296992867643986 0.311037530387148 TRLQQELDDLLVDLDHQR ddPTM_BT-474_Trastuzumab_2h_R1 3 TRLQQELDDLLVDLDHQR 18 1 P35579 P35579 MYH9 Myosin-9 0 ;; 102.36 0.00034044 54977000.0 18767.8 37821.6 25837.5 35057.3 30385.5 31559.300000000003 42864.0 26325.8 65472.0 43052.0 False True 18666.756250098595 39080.46909236 29475.195416424074 39495.55058549408 34254.91331603135 29377.679873601246 40790.504563618604 28290.364875703734 49337.30287985247 40304.384501328415 0.46314455563719986 0.9696331944002748 0.7313148626659361 0.9799318628521004 0.8499053822519563 0.728895385380044 1.0120612203437611 0.7019177994089277 1.2241175120346108 1.0 15.298649170021104 4.7455555794395465 24.539671458146564 0.8869489862483041 0.4631443001947549 0.41961330566179444 0.15569534971500984 598.9723526888698 2101239.9178600847 0.033759610351789905 0.33398761983198094 55661.58633885809 -4.7455555794395465 -0.4238046860535492 TRLS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 12 TRLSPPR 7 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 T(0.002)RLS(0.998)PPR;T(0.02)RLS(0.98)PPR;T(0.074)RLS(0.926)PPR;TRLS(1)PPR;T(0.018)RLS(0.982)PPR;T(0.035)RLS(0.965)PPR;T(0.003)RLS(0.997)PPR;T(0.035)RLS(0.965)PPR;T(0.019)RLS(0.981)PPR;T(0.003)RLS(0.997)PPR;T(0.003)RLS(0.997)PPR;T(0.003)RLS(0.997)PPR 90.108 0.010526 53316979300.0 455566.8 505789.2 477459.77 523908.6 504770.3 533419.8 535275.8500000001 479049.39999999997 635166.7 534247.7 True False 453114.07896702946 522624.08776597143 544681.9554612823 590235.3750424405 569049.8056970311 496545.74476114486 509382.5121831806 514798.49879156344 478638.3775827281 500151.5543935326 0.9059535554507288 1.0449314476282858 1.089033815203765 1.1801130474504684 1.1377547479324386 0.9927905659780263 1.018456321306131 1.029285012251519 0.9569866840924034 1.0 18.932005796607754 2.7100638109381268 24.794381109933255 1.005191812263347 1.077079907184748 0.208705163123992 0.06929561686333345 1147.5471358858342 998451.7988425214 0.02404814422668024 0.02267653381696584 512.9367443096573 -2.7100638109381268 0.07188809492140114 TRNEELAQTWK ddPTM_BT-474_Trastuzumab_2h_R1 3 TRNEELAQTWK 11 1 Q8TAT6;Q8TAT6-2;I3L283;I3L281;I3L3I1 Q8TAT6 NPLOC4 Nuclear protein localization protein 4 homolog 0 ;; 143.42 3.3918e-05 1427840000.0 395504.0 401319.0 358212.0 357427.0 350077.0 428048.0 443516.0 407540.0 527980.0 486380.0 False True 393374.65040862537 414676.66031254147 408645.1359654802 402677.2215521844 394657.2308810552 398458.04927660857 422061.43668434705 437952.7042461876 397866.4035695334 455338.81198913173 0.8639163630488293 0.9106991308319203 0.897452897064338 0.8843463613240061 0.8667331237524182 0.8750803550788004 0.9269173318228384 0.9618172066927624 0.8737810023957059 1.0 18.796580910903057 0.3371024388733999 0.33150162178771103 1.0179886777439693 0.878580706692821 0.5599890515773434 0.02834541880166636 2.69450267134426 0.5446657558490915 0.11284531386089035 0.03179890943944038 2.173213723511418 -0.3371024388733999 -0.13940797105114833 TRNEMTAEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TRNEMTAEEK 10 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ; 127.56 0.00032184 1234660000.0 2667400.0 2469600.0 2291800.0 2450800.0 2263600.0 2822800.0 2861200.0 2625900.0 3972300.0 2945100.0 False True 2653039.014776 2551799.1430952735 2614465.5193172963 2761071.028713814 2551856.0425916486 2627666.4801564543 2722792.8251545727 2821857.9920500224 2993379.891092956 2757141.196573038 0.9622427092502803 0.925523562691315 0.9482523138702221 1.0014253285778982 0.9255441998267819 0.9530402300116101 0.9875420339512687 1.0234724270042548 1.085682479668995 1.0 21.3947417207418 1.8358142673293225 2.1448607246038223 1.044367591589758 0.9524815757596594 0.6406393111004041 0.028080121316953987 0.1783892692082675 1.5535414141442014 0.017068213027318417 0.007876263856808828 68.51951296173297 -1.8358142673293225 -0.09188601583009848 TRNS(ph)GIWESPELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRNSGIWESPELDR 14 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 T(0.03)RNS(0.97)GIWESPELDR;T(0.027)RNS(0.973)GIWESPELDR 249.52 2.4005e-18 522510000.0 265630.0 251320.0 298140.0 286150.0 268300.0 316130.0 279820.0 242750.0 328240.0 276050.0 True False 264199.8775942674 259685.0342738518 340115.5205206644 322376.56066037936 302466.4146613092 294276.67718997464 266284.0375837942 260865.2376595232 247349.65019065834 258432.25266170493 1.0223177442953009 1.0048476209886497 1.3160722665908313 1.2474316086327635 1.1703895761696828 1.1386995011616876 1.0303823723286099 1.0094144015414481 0.9571160241924059 1.0 17.979426605813188 2.167601177632727 2.3387161308867443 0.9910279120717308 1.1590858591107607 0.42032006923330145 0.08759517097451894 0.32296117078194153 3.540148219525859 0.0455063647030528 0.029271093892862827 147.09610654489506 -2.167601177632727 0.16805794703902988 TRPDGNCFYR ddPTM_BT-474_Trastuzumab_2h_R1 8 TRPDGNCFYR 10 1 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ;;;;;;; 233.54 4.1562e-12 12645170000.0 1751689.0 1944276.0 1870916.0 1699101.0 1591391.0 1793484.0 1977814.0 1612183.0 2343883.0 1765303.0 False True 1742258.1010549443 2008990.0513203382 2134324.710506605 1914207.0123872487 1794045.2109365477 1669504.6724872172 1882139.580836803 1732492.2819593938 1766264.4410730896 1652639.8511880643 1.0542273319879432 1.2156248379682346 1.2914639018127652 1.1582723307871021 1.0855633244271754 1.010204777094676 1.1388685680571928 1.048318107973691 1.0687533885881682 1.0 20.656340931270982 3.26761429050642 3.5474005938681583 1.0618757432565407 1.1941805916293322 0.4568280247084723 0.06527347918742837 0.20380940150583202 5.368931167814153 0.0188543988057454 0.025068332112653285 1851.8861791486047 -3.26761429050642 0.13230484837279155 TRPEDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRPEDYR 7 1 P83436 P83436 COG7 Conserved oligomeric Golgi complex subunit 7 0 93.429 0.013627 151980000.0 196200.0 242820.0 223990.0 204300.0 219350.0 263320.0 222150.0 199500.0 254630.0 223990.0 False True 195143.68099986936 250902.11691221062 255525.8450440187 230164.35905264926 247282.92231069037 245117.30818860617 211403.75580458832 214387.7030404735 191879.84836719255 209694.76643251325 0.9306082565616777 1.1965111060268605 1.218560908272622 1.0976161349583506 1.1792517596774368 1.1689243005856946 1.0081498904390878 1.0223798461344558 0.9150435732450474 1.0 17.677931329499927 2.179357037826989 5.915851263516012 0.9906549422896216 1.1393056396752788 0.44002233523115375 0.08019825742306123 0.1869645340654233 13.058370335749887 0.029786656757843023 0.02204873250936995 151.1322116571451 -2.179357037826989 0.14865069738565717 TRPLVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TRPLVK 6 1 Q9BQ61;K7EN60 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 86.086 0.049227 255670000.0 305360.0 285520.0 256510.0 241630.0 234450.0 321120.0 323810.0 288700.0 392580.0 288160.0 False True 303715.97568868543 295023.36059951526 292624.378375111 272220.3332251182 264305.81780597864 298921.73023517133 308146.0732256754 310244.2599888954 295833.91930248745 269769.3820938121 1.1258356056991983 1.0936132125510118 1.0847204975742988 1.009085356952976 0.9797472780438311 1.1080639615774541 1.1422574008733053 1.1500351062116017 1.0966178482019557 1.0 18.04136709104016 2.508611612699022 24.712125018835174 1.1164543289941693 1.0577118025941752 0.08243850214615411 0.05554349243981862 951.4512034168467 746652.996215064 0.01846508748851817 0.017390837378494055 322.5608186807598 -2.508611612699022 -0.05874252639999411 TRPWLQELSMGS(ph)PGPVTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TRPWLQELSMGSPGPVTNK 19 1 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 TRPWLQELSMGS(1)PGPVTNK;TRPWLQELSMGS(1)PGPVTNK 193.19 3.5256999999999997e-15 654390000.0 703620.0 620370.0 572550.0 558060.0 624970.0 753240.0 693750.0 709350.0 946400.0 756560.0 True False 699831.7880995314 641018.6404284164 653160.0633061872 628710.3387808192 704556.2250125916 701170.2917362371 660190.6621176382 762285.2990063148 713172.4011102822 708275.6930763973 0.9880782228454152 0.9050411396219886 0.9221833668598519 0.8876632996538597 0.9947485589295741 0.9899680288203908 0.9321097258753838 1.0762550606464083 1.006913562164778 1.0 19.433951506517175 2.4588862363083566 0.997191858979916 1.0265544760219116 0.9279030230795442 0.3913061600964861 0.04245471857808895 0.4888420327890889 0.9748730240274286 0.027392228856345655 0.019003370349772966 287.66447772627896 -2.4588862363083566 -0.09865145294236743 TRQELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TRQELEK 7 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ; 90.601 0.015521 611420000.0 347990.0 342350.0 313070.0 303000.0 281950.0 350260.0 351470.0 323620.0 534890.0 387720.0 False True 346116.4605053239 353744.91279505444 357147.5347467782 341359.7689327102 317854.6612514205 326047.35062335245 334468.0533542139 347770.1677090629 403073.5266587899 362975.3776562079 0.9535535515942023 0.9745699972247261 0.9839442472735725 0.940448829165567 0.8756920739468905 0.8982629971451347 0.9214620989278377 0.9581095278546784 1.1104707136376644 1.0 18.469512161120406 1.3757235165371802 5.984332718905251 1.053723138720347 0.936008617738384 0.5884182766790288 0.03945985130858002 0.1468371961808776 6.905273208397057 0.02870480826911814 0.010363345213856748 23.753276081937273 -1.3757235165371802 -0.117714520981963 TRS(ph)EREWDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRSEREWDR 9 2 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 T(0.137)RS(0.863)EREWDR;T(0.033)RS(0.967)EREWDR 88.163 0.010215 1814640000.0 1235700.0 946910.0 869390.0 1078600.0 910870.0 1121570.0 981010.0 1062620.0 1502570.0 1198780.0 True False 1229047.1284991778 978427.3269308172 991792.5551266533 1215150.6494086497 1026863.8953505288 1044038.5057917938 933554.7984778718 1141918.100275028 1132281.7569064624 1122272.8340728076 1.0951411200419765 0.87182661579719 0.8837356879853965 1.0827586773162654 0.9149859679165243 0.930289386051433 0.8318429976514137 1.0175048932895634 1.0089184399103128 1.0 20.09799201934771 1.6030578168597551 24.99999999997925 1.009918455991005 0.9415950500063582 0.1179759230825268 0.08047232320346687 0.9391506849270272 4859.664263084498 0.040583745135995886 0.01972789408615906 40.09200878601167 -1.6030578168597551 -0.06832340598464681 TRS(ph)EREWDRDK ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSEREWDRDK 11 3 S4R3H4;Q9UKV3;E7EQT4;G3V3B0;Q9UKV3-3;Q9UKV3-2;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 T(0.016)RS(0.984)EREWDRDK 110.22 0.010081 1555400000.0 477600.0 391210.0 320990.0 476400.0 343770.0 512510.0 487300.0 491950.0 1023500.0 587060.0 True False 475028.6546663488 404231.1883585608 366182.6019049045 536712.1911536076 387547.07181557384 477081.3900187707 463727.43733322516 528661.8070714824 771272.1391973513 549593.3281926479 0.8643275496602061 0.7355096352568283 0.6662791979464264 0.976562421015189 0.7051524316898689 0.868062557432539 0.8437646775265722 0.9619145283477161 1.4033506224205814 1.0 19.068004965052424 1.4932243350212409 3.623880734239589 1.2031210805652308 0.807160964108551 0.600265659873805 0.12614809558362472 0.12370299891037705 3.3448219384968993 0.08065122893677257 0.030516123767569008 31.13324110872738 -1.4932243350212409 -0.39596011645667983 TRS(ph)NPEGAEDR ddPTM_BT-474_Trastuzumab_2h_R1 10 TRSNPEGAEDR 11 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 T(0.066)RS(0.934)NPEGAEDR;TRS(1)NPEGAEDR;T(0.146)RS(0.854)NPEGAEDR;TRS(1)NPEGAEDR;T(0.398)RS(0.602)NPEGAEDR;T(0.149)RS(0.851)NPEGAEDR;T(0.13)RS(0.87)NPEGAEDR;T(0.1)RS(0.9)NPEGAEDR;T(0.014)RS(0.986)NPEGAEDR;T(0.004)RS(0.996)NPEGAEDR 206.19 1.6484e-08 5463492000.0 1605337.0 1573455.0 1397031.0 1500702.0 1565807.0 1731260.0 1831605.0 1633903.0 2156144.0 1715246.0 True False 1596694.043961709 1625826.4985013672 1593720.8215888664 1690690.719329556 1765203.2401847958 1611582.0711476787 1743003.268739425 1755833.1386513202 1624791.2020493725 1605777.5317840194 0.9943432464071043 1.0124855195196767 0.9924916683933434 1.0528797955288351 1.099282562649668 1.0036147842704028 1.0854575022001633 1.0934473200036552 1.0118407873376014 1.0 20.61484060164156 3.706544732108263 7.23446452838039 1.0579699432510228 1.001032022527785 0.2738787703884904 0.035263530921680324 0.23495879901521197 43.87498346708954 0.009165940547495213 0.014501742746206059 5087.972227981514 -3.706544732108263 -0.05693792072323789 TRS(ph)PDVISSASTALS(ph)QDIPEIASEALSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 2 T(0.45)RS(0.527)PDVIS(0.199)S(0.216)AS(0.178)T(0.148)ALS(0.282)QDIPEIASEALSR 62.179 0.016006 67368000.0 13964.0 13054.0 12518.0 13250.0 12877.0 15129.0 14137.0 12561.0 16263.0 14095.0 True False 13888.819375546245 13488.494498690361 14280.425591593483 14927.448641446888 14516.809622041308 14083.167839835276 13453.139301415555 13498.3656034656 12255.201563035193 13195.445032663389 1.0525464916997123 1.0222083806420754 1.0822238701494633 1.1312576881261813 1.1001379329084449 1.0672749426013644 1.0195290320344848 1.022956449748559 0.928744845869104 1.0 13.687752387704307 1.8117158583106547 1.4945953498695486 0.9710782998926264 1.0773737285920757 0.6089797087438078 0.03399803803485301 0.2809380394290669 1.1911738045034659 0.02739976884679455 0.011306465704563966 64.8210196508381 -1.8117158583106547 0.1062954286994493 TRS(ph)PDVISSASTALSQDIPEIASEALSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 T(0.175)RS(0.823)PDVIS(0.001)S(0.001)ASTALSQDIPEIASEALSR;T(0.173)RS(0.827)PDVISSASTALSQDIPEIASEALSR;T(0.165)RS(0.834)PDVIS(0.001)S(0.001)ASTALSQDIPEIASEALSR;T(0.199)RS(0.793)PDVIS(0.007)S(0.001)ASTALSQDIPEIASEALSR 243.84 1.2004e-45 23387970000.0 549283.0 566934.0 563640.0 584549.0 650851.0 678060.0 593037.0 566214.0 761630.0 686675.0 True False 546325.7213590789 585804.0554711594 642995.6127532951 658552.8434648406 733733.0169538861 631187.3081815526 564349.5346886589 608467.7638564338 573936.4918191286 642850.8136079551 0.8498483781841453 0.9112597247616055 1.000225245332626 1.0244256202597908 1.1413737082105582 0.9818565907057939 0.8778856971826584 0.9465147293529134 0.8927988884356393 1.0 19.294124444586757 -0.22122289361085545 7.1346134604002795 0.9999999989730897 0.9616895002065997 0.021899917056066975 0.0807247278445527 11348455.176997697 1590619.0179931743 0.08378459935902464 0.02032075022154688 0.6008652753438296 0.22122289361085545 -0.03831049876648995 TRS(ph)PS(ph)PDDILER ddPTM_BT-474_Trastuzumab_2h_R1 2 TRSPSPDDILER 12 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 T(0.001)RS(0.999)PS(1)PDDILER;T(0.004)RS(0.996)PS(1)PDDILER 152.48 0.00083504 1034960000.0 1009830.0 1169180.0 860800.0 1010250.0 1182620.0 1085090.0 1166880.0 1021320.0 1027180.0 1223950.0 True False 1004393.1874826602 1208095.4495157655 981993.1577922733 1138147.5464167332 1333219.6470620877 1010080.2823271113 1110433.5564855179 1097536.0845578755 774045.2525068248 1145836.4631236868 0.876558932977717 1.0543349669832929 0.8570098695543715 0.9932896910210094 1.1635339683880996 0.8815222021941177 0.9691030022367622 0.9578470574813628 0.6755285570130009 1.0 20.12796972277657 1.4312451185377388 20.219493309790323 0.8307340940832318 0.9728063905422246 0.1784911004645109 0.1127839160727731 16.303634932142877 7186.926587592382 0.06174031711400169 0.02608009194636185 26.992624833214254 -1.4312451185377388 0.14207229645899278 TRS(ph)WDSSSPVDRPEPEAASPTTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 T(0.211)RS(0.788)WDSSSPVDRPEPEAASPTTR 212.66 1.4009e-25 786720000.0 28934.0 39047.0 40965.0 31016.0 37531.0 40208.0 48329.0 31463.0 64106.0 42993.0 True False 28778.222558869613 40346.65579059006 46732.51592583695 34942.62241985789 42310.350386334685 37428.51559945116 45991.14163529125 33810.92882587675 48307.93527639025 40249.14993184085 0.7150019965043619 1.0024225569711243 1.1610808179793917 0.8681580226919278 1.051211030741875 0.9299206483325426 1.1426611919301168 0.8400408178342453 1.200222498070056 1.0 15.2966706931601 4.736437344623443 6.559641835276314 1.0124711560825863 0.7094906217305015 0.38647936852636233 0.11546976682914345 0.11160827215752692 30.34964493282115 0.025242255499980177 0.15179445988564236 54505.12558335917 -4.736437344623443 -0.30298053435208483 TRS(ph)YDNLTTACDNTVPLASR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRSYDNLTTACDNTVPLASR 20 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 T(0.22)RS(0.78)YDNLTTACDNTVPLASR 266.67 5.5039e-37 403460000.0 133720.0 137060.0 145390.0 155800.0 153210.0 175340.0 164010.0 137930.0 190420.0 171170.0 True False 133000.06637768872 141621.95924548028 165859.6482474657 175524.26402546614 172720.38535318366 163219.15850596328 156076.2097209568 148223.03699434822 143493.5424972738 160245.78405399027 0.8299754477963559 0.8837796269121487 1.0350328355071357 1.0953440370470415 1.0778466739255395 1.0185550869217952 0.9739801308493168 0.9249730835003352 0.8954590808387678 1.0 17.289926875559075 4.3706703020004865 4.568572444495448 1.0006710019619092 0.8420632863527308 0.5051054540160291 0.05858289836509542 0.18662848344657393 6.454769969698677 0.017013547094988972 0.051012293240545174 23478.497559022184 -4.3706703020004865 -0.1586077156091784 TRT(ph)PAS(ph)INATPANINLADLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 2 T(0.392)RT(0.608)PAS(1)INATPANINLADLTR;T(0.479)RT(0.521)PAS(1)INATPANINLADLTR 178.11 1.4265e-16 413730000.0 218740.0 176997.0 144004.0 156537.0 161054.0 185717.0 181464.0 173411.0 231340.0 189472.0 True False 217562.32814429875 182888.23814805388 164278.51149479346 176354.56814989983 181563.27225815327 172878.82092079383 172685.89306020175 186351.80938321567 174329.3567971815 177379.7347448595 1.226534296362757 1.0310548632351815 0.926140247819681 0.9942204976434638 1.023585205600354 0.9746255465398022 0.9735378920742591 1.0505811706803005 0.9828031203673541 1.0 17.436481668669146 4.71777804358647 3.8317211656856367 0.9944083180817951 1.2450190878777454 0.8340662119938931 0.0313350916263176 0.08860108772071011 2.5568143171280737 0.007843527744674256 0.06029896867550895 52212.92743475413 -4.71777804358647 0.2506107697959503 TRT(ph)SQEELLAEVVQGQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TRTSQEELLAEVVQGQSR 18 1 Q6PJT7-5;Q6PJT7;G3V256;Q6PJT7-10;Q6PJT7-4;A0A087WTC9;Q6PJT7-9;Q6PJT7-2;H0YJA2;Q6PJT7-3;Q6PJT7-11;G3V5I6 Q6PJT7-5;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 T(0.124)RT(0.438)S(0.438)QEELLAEVVQGQSR 221.21 1.0289e-18 171230000.0 83270.0 108480.0 100790.0 108970.0 97555.0 107290.0 84924.0 75558.0 84032.0 68218.0 True False 82821.6835721668 112090.69122245531 114980.35591761516 122765.59082705414 109978.05099621334 99873.2948334938 80815.90167881545 81196.5216357499 63323.43957111069 63864.26883563188 1.296839141544481 1.755139348904851 1.8003863195168064 1.9222891464242264 1.7220591889850796 1.563836816022097 1.26543219161895 1.2713920180426117 0.9915315829276441 1.0 15.962721368758167 2.0106696950427128 1.1823990316523416 1.0302517114416292 1.7229589599969977 0.7406126551186605 0.16323388716666487 0.24548413492578747 0.6352294907169632 0.12543340221556568 0.05878147814055 102.48721578389753 -2.0106696950427128 0.6927072485553685 TRTDS(ph)TSDGRPAWMR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRTDSTSDGRPAWMR 15 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 T(0.001)RT(0.002)DS(0.627)T(0.156)S(0.214)DGRPAWMR;T(0.001)RT(0.003)DS(0.896)T(0.05)S(0.05)DGRPAWMR 65.423 0.048505 1145920000.0 236660.0 256370.0 217800.0 267760.0 238470.0 263140.0 233510.0 257230.0 330720.0 239370.0 True False 235385.84885539813 264903.12047106266 248464.34684846303 301658.3885459484 268837.74097757164 244949.7511649317 222214.22920517396 276425.8087874735 249218.48742095573 224093.20166503248 1.0503926362176998 1.1821113648375268 1.1087545048325909 1.346129138700325 1.1996693294579364 1.0930708711595585 0.9916152188201267 1.2335305432454222 1.1121198035872581 1.0 17.77373935678394 2.735883401623736 24.64098998190281 1.1034588031125634 1.1832314414445813 0.17515130053938777 0.0950338745958404 409.97570058249937 3773374.607025145 0.03095331543549277 0.0304305187571014 544.3564856539618 -2.735883401623736 0.07977263833201786 TRTDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TRTDSYSAGQSVEILDGVELGEPAHKK 27 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 T(0.153)RT(0.153)DS(0.686)YS(0.008)AGQSVEILDGVELGEPAHKK 181.85 8.5791e-18 124320000.0 103200.0 91979.0 78763.0 93009.0 94488.0 110130.0 127860.0 109830.0 215150.0 131520.0 True False 102644.3826665978 95040.46541252037 89852.14577973129 104783.92986357235 106520.48672574664 102516.97231813456 121674.9233273673 118026.07230543965 162129.16536229625 123126.281000063 0.8336512873847403 0.7718942263225813 0.7297560281194988 0.8510281396667763 0.8651320080535214 0.8326164932901864 0.9882124461089266 0.9585774161844396 1.3167713996186834 1.0 16.909779208815568 1.8852895108878551 1.2175308508480973 1.132312583607956 0.8032293745278699 0.6615811676199902 0.09210623367360601 0.2651303083611793 0.7268492360148976 0.06907552700902905 0.029592766341821276 76.78732010693743 -1.8852895108878551 -0.32908320908008604 TRWS(ph)GAQPLEQPSGSVLWMAAEVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TRWSGAQPLEQPSGSVLWMAAEVIR 25 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 T(0.035)RWS(0.965)GAQPLEQPSGSVLWMAAEVIR;T(0.041)RWS(0.959)GAQPLEQPSGSVLWMAAEVIR 249.04 1.983e-39 547730000.0 221953.0 259661.0 241193.0 278463.0 257885.0 307770.0 292830.0 281755.0 335760.0 290627.0 True False 220758.02970929662 268303.6594166108 275150.8779128618 313716.3872485451 290725.1261458507 286494.58431265125 278664.69418076763 302780.9888228999 253016.4469534955 272078.9360417072 0.8113749374389514 0.9861243333275984 1.0112906273298707 1.1530344532090324 1.0685322810189364 1.052983330796083 1.0242053215690718 1.1128424464894495 0.9299376520448847 1.0 18.053665743981142 4.766994100680535 1.750816162557795 1.0558931474290183 0.7178998755475726 0.5867167456684843 0.0584946127172391 0.626802487323152 1.810678651990292 0.01464995577647436 0.36097185202432464 58478.21405941041 -4.766994100680535 -0.3379932718814457 TS(ph)DANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSDANETEDHLESLICK 17 0 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 T(0.282)S(0.718)DANETEDHLESLICK;T(0.209)S(0.791)DANETEDHLESLICK 198.73 8.9713e-12 260490000.0 565940.0 512600.0 445660.0 426840.0 409590.0 499980.0 421440.0 395350.0 556790.0 374640.0 True False 562893.0419218455 529661.5811267568 508405.05425383843 480877.90023510833 461748.8586698681 465417.5594263231 401053.3371428574 424853.02454662195 419576.56510375487 350730.15445455926 1.6049177259857597 1.510168357067741 1.4495618577321603 1.3710765787531138 1.3165359545088458 1.3269961351059787 1.143481197864377 1.211338743334845 1.1962945294973641 1.0 18.42000194783295 7.999999999999999 0.14118250735948448 0.925128151327882 3.369877701204478 0.9549103043852767 0.03659351297704341 13.04623203716191 0.12238896224134767 0.14653401669421806 6.45464073273521 99999999.99999979 -7.999999999999999 2.4447495498765957 TS(ph)FS(ph)VGSDDELGPIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 2 T(0.443)S(0.557)FS(0.506)VGS(0.494)DDELGPIR 83.69200000000002 0.012596 22847000.0 67914.0 61543.0 44682.0 57880.0 54124.0 61664.0 68442.0 58997.0 83904.0 69219.0 True False 67548.35856995473 63591.4215514709 50972.83721709379 65207.602065429885 61016.37058191845 57401.31282144244 65131.198986169824 63399.65572069579 63226.98345599862 64801.38415863268 1.0423906749367806 0.9813281363836331 0.7866010561180785 1.0062686609564202 0.9415905443092298 0.8858038075378917 1.0050896262760338 0.9783688503550251 0.975704211830106 1.0 15.983737008978299 2.2071701481682444 24.999790177345382 0.9875682251323513 0.9385334433555055 0.11603991643969935 0.06615581968808107 464.581038748958 369995.9692069033 0.024919922177723288 0.018406475756579218 161.12767785760767 -2.2071701481682444 -0.04903478177684584 TS(ph)MTEEYRVPDGMVGLIIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSMTEEYRVPDGMVGLIIGR 20 1 A0A087WTP3;Q92945 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 T(0.178)S(0.822)MTEEYRVPDGMVGLIIGR;T(0.147)S(0.853)MTEEYRVPDGMVGLIIGR 149.18 6.1706e-08 88124000.0 56816.0 58809.0 51693.0 59057.0 58971.0 61958.0 63157.0 53759.0 86021.0 62283.0 True False 56510.108968851 60766.42201420879 58970.92507638934 66533.61014474937 66480.60730149857 57674.989293443985 60101.85462683043 57770.769562670685 64822.27717234528 58308.045616840995 0.969164861744728 1.0421618727117437 1.0113685761979456 1.1410708323506662 1.1401618181196098 0.9891428992911715 1.030764348058878 0.9907855588626499 1.1117209724076706 1.0 15.831407346520004 -4.894296391352887 16.24178396073252 1.0012869788979946 1.0427905693970763 0.0 0.06152910597768487 0.0 0.0 0.0 0.01384102994787355 1.2755679795160975e-05 4.894296391352887 0.0415035904990817 TS(ph)PAPWK ddPTM_BT-474_Trastuzumab_2h_R1 5 TSPAPWK 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.09)S(0.91)PAPWK;T(0.055)S(0.945)PAPWK;T(0.401)S(0.599)PAPWK;T(0.002)S(0.998)PAPWK;T(0.099)S(0.901)PAPWK 133.58 0.0034172 5552670000.0 20113260.0 17956860.0 15262490.0 14286520.0 15256430.0 21210700.0 19643540.0 19500800.0 23674000.0 17993260.0 True False 20004972.442953248 18554543.229948908 17411315.928058766 16095191.967170103 17199245.928554755 19744454.23361717 18693306.92459 20956048.719055932 17839859.91534741 16844914.741995078 1.1875971323903476 1.1014922612633744 1.0336244614317713 0.9554926346432681 1.0210349053104029 1.1721314435859638 1.1097299814754658 1.244057867910226 1.0590650168665972 1.0 24.00580979070551 2.737635086571542 24.985065787465818 1.1405384764521869 1.0549074189051706 0.06974695666356867 0.08385275964630638 143.481579900265 3873271.2644861042 0.02714228219709484 0.02694469223306518 546.5565289379671 -2.737635086571542 -0.08563105754701628 TS(ph)PAPWKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPAPWKR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.197)S(0.803)PAPWKR;T(0.15)S(0.85)PAPWKR 120.33 0.00093227 830340000.0 998090.0 1137660.0 944930.0 886130.0 1001020.0 1171140.0 1125030.0 1027330.0 1653690.0 1212150.0 True False 992716.3943382248 1175526.325370008 1077967.9305212032 998313.9671430433 1128493.9634896168 1090181.8483670237 1070608.000868045 1103994.5812760366 1246160.257810715 1134789.5492261744 0.8748022001217487 1.0358980889201987 0.9499276154387231 0.8797348969452571 0.9944521997573466 0.960690772232112 0.9434418933432235 0.9728628378970028 1.0981421697622131 1.0 20.11399333869995 1.3930051555653369 5.903862726054694 1.048134458165603 0.9522809035396926 0.38370828010093316 0.05006114454772743 0.20362615158038408 10.230058557963213 0.03218082177465346 0.011728381456650642 24.71753487343729 -1.3930051555653369 -0.09585355462591028 TS(ph)PDTLR ddPTM_BT-474_Trastuzumab_2h_R1 9 TSPDTLR 7 0 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 T(0.157)S(0.843)PDTLR;T(0.004)S(0.996)PDTLR;T(0.082)S(0.918)PDTLR;T(0.117)S(0.883)PDTLR;T(0.223)S(0.777)PDTLR;T(0.116)S(0.884)PDTLR;T(0.248)S(0.752)PDTLR;T(0.029)S(0.971)PDTLR;T(0.026)S(0.974)PDTLR 211.79 0.00010134 27047700000.0 39663970.0 36737080.0 32147250.0 32935500.0 32802180.0 37856000.0 37072890.0 35406690.0 46607600.0 37074210.0 True False 39450423.592601314 37959851.499766134 36673303.37109388 37105130.923047066 36979343.18924682 35239103.82343872 35279532.678507134 38048916.999328785 35121781.489843175 34708102.17697193 1.136634420154952 1.0936884796009294 1.0566208196605407 1.069062512662116 1.0654383521373234 1.0152990688963426 1.0164638936067885 1.096254609523808 1.0119188110822641 1.0 25.048769145634925 7.999999999956749 0.4539634653699988 1.0367686897108104 3.381790606773198 0.5926462214819692 0.027154578038111037 69.55842966232197 0.8307532021069555 0.01668131772759836 151.5508882951938 99999999.99004115 -7.999999999956749 2.345021917062388 TS(ph)PENVQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPENVQDR 9 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 T(0.406)S(0.594)PENVQDR 90.913 0.011652 446920000.0 453480.0 457460.0 427580.0 403630.0 456040.0 470730.0 469860.0 440640.0 592370.0 463330.0 True False 451038.51406636456 472686.2795595901 487779.54740801535 454729.5166148836 514113.99083914876 438189.5430792289 447131.0767604947 473522.7943245819 446388.3508513283 433759.88272323005 1.0398345537043578 1.089741809666612 1.12453817615783 1.048343875786765 1.1852502071225208 1.0102122407636884 1.0308262579593983 1.0916703300261714 1.029113960583017 1.0 18.726537102659975 TS(ph)PGRVDLPGSSTTLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPGRVDLPGSSTTLTK 17 1 O94875-12;O94875-10;O94875-3;H7BXR3;O94875-9;O94875-5;O94875-4;O94875-11;O94875-2;O94875-8;H7BZK1;H7BZX1;H7C1R7;O94875-7;O94875 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 T(0.161)S(0.839)PGRVDLPGSSTTLTK 168.68 1.2520999999999998e-09 771790000.0 390300.0 352900.0 331720.0 294240.0 315630.0 440310.0 441400.0 342730.0 520690.0 393220.0 True False 388198.66816640686 364646.06316744507 378423.2926380725 331490.75383089297 355823.6096144208 409872.40607825125 420047.7956882526 368306.25294767634 392372.9263885385 368124.36294742103 1.0545313139784043 0.9905512915468929 1.0279767674385694 0.9004857792534627 0.9665853321021376 1.1134074441489574 1.1410486182579764 1.0004940993277354 1.0658705749518156 1.0 18.48983370674591 2.7520556991883827 24.685138687822114 1.0652928004477518 0.9855225131367006 0.3201444850405495 0.05540401749294868 814.7941509278643 1490415.6280876934 0.017596824197094334 0.01856291802777728 565.0094338238871 -2.7520556991883827 -0.07977028731105118 TS(ph)PINLGLNVNDLLK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSPINLGLNVNDLLK 15 0 P50616 P50616 TOB1 Protein Tob1 1 T(0.139)S(0.861)PINLGLNVNDLLK;T(0.118)S(0.882)PINLGLNVNDLLK;T(0.164)S(0.836)PINLGLNVNDLLK;T(0.05)S(0.95)PINLGLNVNDLLK 274.08 1.9046999999999998e-33 4547546000.0 2265520.0 1853440.0 1667500.0 1511820.0 1551720.0 2015290.0 2133010.0 1984680.0 3016100.0 2025790.0 True False 2253322.692042937 1915130.629971862 1902269.5058301757 1703216.2569896048 1749322.3442349893 1875977.7457823819 2029828.1574105124 2132786.899600834 2272822.568669402 1896502.3478339217 1.188146534390825 1.0098224408523493 1.0030409442956087 0.898082862346531 0.9223939776467805 0.9891776553427515 1.0703008934994824 1.1245896436863279 1.1984285552112772 1.0 20.854909726986516 2.063410416111884 3.2368893635441487 1.1184674570081392 0.9939458382486801 0.23627211057983577 0.08542502081640241 0.32195544912972046 6.735829332169749 0.03903909020169746 0.025173531875471788 115.72053054963533 -2.063410416111884 -0.12452161875945911 TS(ph)PITR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPITR 6 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.23)S(0.77)PITR;T(0.155)S(0.845)PITR 116.9 0.024312 3556700000.0 4308200.0 4499400.0 4082600.0 3705200.0 3763300.0 3964300.0 4509200.0 4307900.0 5783700.0 4487600.0 True False 4285005.129886016 4649159.809055265 4657394.593404665 4174277.9400972878 4242533.94817334 3690257.2719584242 4291072.769183204 4629377.373072961 4358384.632609403 4201197.525972344 1.0199485035863138 1.1066272843191878 1.1085873883843955 0.993592401759585 1.0098391998818073 0.8783822348615552 1.0213927678132817 1.10191852310051 1.0374148336671407 1.0 22.002369187341294 3.7338507098592513 24.865320456444927 1.0116433368165738 1.0812116817619966 0.24964312795420618 0.0568159938655028 599.5533823417937 3165261.3633049475 0.01693675637998639 0.02721986595237393 5418.146078520765 -3.7338507098592513 0.06956834494542274 TS(ph)PLKDNPS(ph)PEPQLDDIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 2 T(0.304)S(0.696)PLKDNPS(1)PEPQLDDIKR 143.32 7.8502e-08 441350000.0 516880.0 301280.0 255890.0 249930.0 224470.0 435880.0 443400.0 391580.0 762940.0 367480.0 True False 514097.1755107662 311307.922672394 291917.0877642481 281571.11237409967 253054.92396207276 405748.6415511533 421951.0480475101 420801.68800295045 574923.6598722304 344027.1117845435 1.49435075870629 0.9048935738162381 0.8485293099430757 0.8184561702521904 0.7355668064921448 1.1794089118338575 1.2265052189019585 1.2231643192891413 1.6711579994087566 1.0 18.392162738479993 2.5317916162523417 5.593939172145613 1.2794903329036307 0.9426464549246666 0.27409083830739567 0.2471622765463867 0.2703017754344342 18.649136278298506 0.0815188288897681 0.07538168409905215 340.24489377671534 -2.5317916162523417 -0.3368438779789641 TS(ph)PLKDNPSPEPQLDDIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 T(0.2)S(0.8)PLKDNPSPEPQLDDIKR 231.29 1.945e-20 900150000.0 535020.0 309800.0 300530.0 287660.0 267080.0 478630.0 469210.0 423280.0 783350.0 464860.0 True False 532139.5117663108 320111.5057219455 342842.01174641226 324077.7265055561 301091.0548928159 445543.4346738286 446512.51974373613 454867.3029722886 590303.8888522172 435192.2368133312 1.222768851905241 0.7355634559704984 0.7877944107111196 0.7446771773287952 0.6918575963062598 1.0237853458423187 1.026012143537525 1.045210057750632 1.3564209995442054 1.0 18.731293295706124 2.5507980727836927 4.619211846986416 1.0938831844027859 0.8234330035031798 0.3719049321227933 0.1665543694720339 0.23861991806001828 9.515990664691728 0.05526525438682995 0.0510071956689387 355.46600458690074 -2.5507980727836927 -0.27045018089960604 TS(ph)PLNSSGSSQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPLNSSGSSQGR 13 0 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 T(0.095)S(0.905)PLNSSGSSQGR 112.1 0.00097309 334370000.0 327790.0 243750.0 245990.0 234060.0 244940.0 297800.0 287580.0 269130.0 311110.0 262790.0 True False 326025.2150608923 251863.0714000136 280623.2538165907 263691.9720012872 276131.6571268768 277213.7869457957 273668.6567377156 289213.84721444896 234441.10916041792 246018.517214162 1.3252059997462853 1.0237565621158664 1.1406590731229587 1.0718379046717863 1.1224019242685743 1.126800494876887 1.1123904811583096 1.1755775560694275 0.952940907924968 1.0 17.908407382227516 4.164482714318312 0.01680850400537971 4.076663380079705e-08 2.2903958668937108 0.2852053850109182 0.08344908738047518 2785.6421610967927 8.834383999366677 542.9490036808423 664.2685567502805 14604.366203472171 -4.164482714318312 2.290395826127077 TS(ph)PLVSQNNEQGSTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPLVSQNNEQGSTLR 16 0 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 T(0.192)S(0.808)PLVSQNNEQGSTLR 132.01 4.3487e-05 452420000.0 654200.0 613460.0 464160.0 562430.0 554650.0 699860.0 575230.0 496790.0 717210.0 607080.0 True False 650677.8598884532 633878.6452555993 529509.6934489562 633633.5803327532 625281.3898318874 651480.325493232 547403.9273080048 533862.9924485054 540463.205621624 568335.6346526626 1.1448830941000452 1.1153244783656637 0.9316848375565352 1.114893280833952 1.1001974039759572 1.1462950513236483 0.9631701655352825 0.9393445701759927 0.950957801461679 1.0 19.11638364966231 2.2009000970302046 12.81443178042065 0.9563981630056577 1.0873511122919848 0.5303151330471065 0.059152075855896706 0.930231025563626 314.91371209163646 0.022828563196272675 0.016886103757309548 158.81813691317498 -2.2009000970302046 0.13095294928632706 TS(ph)PPCS(ph)PANLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 T(0.048)S(0.952)PPCS(1)PANLSR;T(0.004)S(0.996)PPCS(1)PANLSR;T(0.035)S(0.965)PPCS(1)PANLSR 246.47 2.2139e-16 2415320000.0 1507630.0 1503470.0 1331000.0 1353160.0 1351150.0 1586320.0 1525560.0 1400760.0 1820300.0 1585560.0 True False 1499513.0875934379 1553512.090083193 1518393.230740606 1524469.9172573807 1523210.9436065166 1476661.432195616 1451762.8345948597 1505291.8241151562 1371711.4557703347 1484368.2033337906 1.0102029161131536 1.046581358044527 1.0229222286831512 1.0270160151864776 1.026167860632886 0.9948080461971189 0.9780341773249377 1.0140959774902025 0.9241045804467944 1.0 20.501417571818266 2.6564421103994467 2.8738038596740703 0.98373168581258 1.02800513535859 0.4780843842320901 0.023397629539858484 0.25086381183005557 4.054823029134578 0.007857504715798169 0.007454412507666121 453.35886295008487 -2.6564421103994467 0.04427344954600998 TS(ph)PPLLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.13)S(0.87)PPLLDR;T(0.12)S(0.88)PPLLDR;T(0.141)S(0.859)PPLLDR;T(0.119)S(0.881)PPLLDR;T(0.127)S(0.873)PPLLDR 204.28 9.3147e-05 137059900000.0 16629200.0 16764200.0 14817300.0 14697500.0 14460100.0 17045700.0 17083200.0 15804200.0 21237500.0 16020400.0 True False 16539670.234877827 17322186.262827095 16903447.0457196 16558201.993031362 16301508.023272444 15867370.880261749 16256820.351838576 16983589.656101517 16003802.692920122 14997964.356245516 1.102794342086185 1.1549691579053338 1.1270494211223137 1.1040299603149895 1.0869147062937312 1.057968301788515 1.0839351238402457 1.13239298698754 1.0670649904735738 1.0 23.83826336410306 -4.9999999999333795 0.1429546477192789 0.6404102691349418 1.1402834861311524 0.6313683920672701 0.025341086951361617 99.2025896693132 0.8615513693758112 10.170973010963609 0.16276578681746448 1.0000000001533993e-05 4.9999999999333795 0.49987321699621057 TS(ph)PQELSEELSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSPQELSEELSR 12 0 Q96PU5-7;Q96PU5;A0A1B0GVY1;Q96PU5-2;Q96PU5-4;Q96PU5-3;K7ERN1;Q96PU5-5;Q96PU5-6;Q96PU5-9 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 T(0.199)S(0.801)PQELSEELSR;T(0.252)S(0.748)PQELSEELSR;T(0.179)S(0.821)PQELSEELSR;T(0.179)S(0.821)PQELSEELSR 153.08 7.3791e-05 1090120000.0 1507996.0 1456201.0 1479284.0 1218629.0 1155935.0 1469210.0 1617636.0 1293441.0 2069890.0 1469821.0 True False 1499877.1170901074 1504669.7699929066 1687554.3290329732 1372907.3064511553 1303136.4704864724 1367646.970848329 1539384.7667103803 1389964.1353803156 1559793.3446049874 1376015.765402932 1.0900144858812033 1.0934974786079588 1.2264062458171145 0.9977409714118599 0.9470360029667838 0.9939180968961119 1.1187261115860907 1.0101367806445876 1.1335577569841584 1.0 20.39206556882518 3.7139866156798687 24.99617690447164 1.028758934470039 1.1323252348936632 0.3716151580127808 0.06422960568313611 819.000896611283 833071.048328743 0.01735052589674802 0.02689210371201255 5175.908803115803 -3.7139866156798687 0.10356630042362425 TS(ph)PQVLGSILK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 T(0.055)S(0.945)PQVLGSILK;T(0.067)S(0.933)PQVLGSILK 167.01 2.0711e-05 291470000.0 1322250.0 1075180.0 994250.0 901740.0 891110.0 1244410.0 1165550.0 1100740.0 1704880.0 1168590.0 True False 1315131.1529157853 1110966.716339964 1134231.757824078 1015900.1915425139 1004587.5764772256 1158386.8657260507 1109167.8936666118 1182882.8082444633 1284735.1682215738 1094009.5857197647 1.2021203196775845 1.0154999835847351 1.0367658315149502 0.928602641881002 0.9182621337054309 1.058845261363895 1.0138557359503155 1.081236237492588 1.174336299234826 1.0 20.061193948414225 -0.22555097298551707 7.945013248685528 1.0000000019891748 1.0408450937022877 0.02124945870776307 0.08648551410127522 0.0 0.0 0.08474048387475644 0.019973523596289858 0.5949069286511857 0.22555097298551707 0.0408450917131129 TS(ph)PSGGTWSSVVSGVPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPSGGTWSSVVSGVPR 17 0 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4 Q99700 ATXN2 Ataxin-2 1 T(0.318)S(0.682)PSGGTWSSVVSGVPR;T(0.151)S(0.848)PSGGTWSSVVSGVPR;T(0.007)S(0.993)PSGGTWSSVVSGVPR 437.88 1.0142999999999994e-161 1248100000.0 1387020.0 1264030.0 1151370.0 1241160.0 1217860.0 1374530.0 1390300.0 1287120.0 1627390.0 1465460.0 True False 1379552.4384324094 1306102.4744277282 1313472.8881125562 1398290.7287409988 1372947.252178242 1279511.9763955842 1323045.877538235 1383171.4302629277 1226341.5404087722 1371933.088156572 1.005553733153324 0.9520161629622196 0.9573884466023287 1.0192120452607807 1.0007392226562832 0.9326343882520017 0.9643661844441513 1.0081916109490852 0.8938785360564289 1.0 20.387778689509307 1.2721724960023724 24.9999595778603 0.946938550898887 0.9794103719207838 0.11984855831712415 0.03582115770044333 337.14270824626135 250761.2663954523 0.02305147663929963 0.008416379776530444 18.71425298052562 -1.2721724960023724 0.03247182102189683 TS(ph)PSKSPFLHSGMK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPSKSPFLHSGMK 14 1 O14497;H0Y488;A0A1B0GTU5;O14497-3;O14497-2;H0YEW5 O14497 ARID1A AT-rich interactive domain-containing protein 1A 1 T(0.164)S(0.835)PS(0.001)KSPFLHSGMK 244.97 7.643800000000001e-18 1990100000.0 3213700.0 2644800.0 2696700.0 2426400.0 2390000.0 3839000.0 4000900.0 3183300.0 6045800.0 3822800.0 True False 3196397.796275638 2732830.56918464 3076371.9198634075 2733581.9912156044 2694352.333360155 3573618.9660339537 3807361.1820777752 3420854.010469869 4555893.599569463 3578825.6311362637 0.8931415290162639 0.7636109860756128 0.8596037462955889 0.7638209493731893 0.7528593485860077 0.9985451470289551 1.0638576936951667 0.9558593692601225 1.2730135718076279 1.0 21.77105482327036 2.6132639559280877 4.260663427828596 1.0546020052626601 0.8053224339301636 0.67320206123061 0.0883358124613724 0.14217471960191816 4.268902153138606 0.028655325331011398 0.026801958272855083 410.4534930200453 -2.6132639559280877 -0.24927957133249656 TS(ph)PTFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPTFR 6 0 P62750;H7BY10;K7EJV9;K7ERT8;A8MUS3 P62750 RPL23A 60S ribosomal protein L23a 1 T(0.209)S(0.79)PTFR;T(0.131)S(0.868)PTFR 142.64 0.012064 1241890000.0 2088660.0 1990740.0 1818560.0 1910910.0 1913150.0 2104460.0 2057750.0 1963130.0 2692900.0 2178280.0 True False 2077414.8866319435 2057000.5774722567 2074597.4407931147 2152831.0100699845 2156778.31237154 1958983.6335659816 1958208.771131629 2109628.7291721534 2029270.87801128 2039260.3054806646 1.0187100102173006 1.0086993661103067 1.017328408353499 1.0556921077138068 1.0576277616815455 0.960634416460256 0.9602544441574213 1.0345068373578246 0.995101445635686 1.0 20.9596145121415 2.7440034777432314 24.999537576999884 0.9932300106779627 1.0308829347539683 0.4126794277016751 0.024612538156811498 557.5001740763925 2560657.069313446 0.008481469628119577 0.008757000288992307 554.6301543073234 -2.7440034777432314 0.03765292407600562 TS(ph)PTVATQTGASATSTR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSPTVATQTGASATSTR 17 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 T(0.266)S(0.73)PT(0.004)VATQTGASATSTR;T(0.009)S(0.985)PT(0.006)VATQTGASATSTR;T(0.025)S(0.972)PT(0.003)VATQTGASATSTR;T(0.02)S(0.974)PT(0.006)VATQTGASATSTR 287.16 1.4611999999999996e-36 1026910000.0 742570.0 661700.0 631440.0 651870.0 674070.0 806240.0 759080.0 708050.0 961780.0 801420.0 True False 738572.0856272838 683724.2844939037 720341.2634251297 734396.6751622626 759908.818974091 750506.5264848167 722360.4004328013 760888.2864050489 724762.2061917237 750272.6894698183 0.9844048650487295 0.9113010430608356 0.96010593686165 0.9788396745205075 1.0128435029550151 1.0003116693680583 0.9627971410544862 1.014148984874729 0.9659983848057676 1.0 19.517055518371162 3.7249361610239085 3.011773838917738 0.9930437473621325 0.9461854235066592 0.37719177411953553 0.02324661717236644 0.22968832962458308 4.227342699542576 0.005953236869878802 0.01079665018450034 5308.064127800495 -3.7249361610239085 -0.04685832385547328 TS(ph)PYGSSLDLSTGSSSRPPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPYGSSLDLSTGSSSRPPPK 21 1 J3KNZ9 J3KNZ9 FBRS 1 T(0.083)S(0.917)PYGSSLDLSTGSSSRPPPK 157.83 1.1979000000000002e-09 348810000.0 176000.0 130220.0 131660.0 119530.0 132300.0 170800.0 152850.0 148890.0 220700.0 178080.0 True False 175052.43555543837 134554.2939803476 150196.583590765 134662.4857443131 149147.62079646374 158992.99801995262 145456.06155629683 160000.92784810055 166311.44222848606 166714.78193804156 1.0500114838076893 0.807092762958199 0.9009194136521412 0.8077417261917393 0.8946274533226062 0.9536826679174815 0.8724844903696338 0.9597285015048266 0.9975806601858173 1.0 17.347022502475845 1.548068695747587 3.0068470530285842 0.9973998806876732 0.8930756888096185 0.27783301446650577 0.0660761303289225 0.27281054308808 5.4699301157773 0.04401065229673363 0.016738443174038026 35.32390399488796 -1.548068695747587 -0.10432419187805464 TS(ph)PYILR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 T(0.212)S(0.788)PYILR;T(0.102)S(0.898)PYILR 151.04 0.0020019 201081000.0 400090.0 325220.0 273260.0 284750.0 288530.0 451290.0 446380.0 349640.0 601090.0 476690.0 True False 397935.95989417814 336044.75110035867 311732.63278150145 320799.3208039246 325272.58524870494 420093.3845223914 424786.8940628047 375731.9122359456 452959.4236933421 446267.23608515866 0.8916988022357131 0.753012374487275 0.6985335412838044 0.7188502647384767 0.7288739995840408 0.9413493766820636 0.9518666388982789 0.8419437544463757 1.0149959196352618 1.0 18.767548365560334 2.7357375053512754 24.974165429743532 0.9323959183646101 0.7524057260379212 0.6722357987401741 0.06634666168478212 160.1857402046185 1417048.3291348915 0.021524381582152953 0.021126866673867765 544.1736460211822 -2.7357375053512754 -0.1799901923266889 TS(ph)SESIISVPASSTSGSPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSESIISVPASSTSGSPSR 20 0 Q6H8Q1-7;Q6H8Q1-2;Q6H8Q1;D6RAL0;F5GYR0;Q6H8Q1-8;Q6H8Q1-3;Q6H8Q1-5;Q6H8Q1-9;Q6H8Q1-4;Q6H8Q1-6 Q6H8Q1-7 ABLIM2 Actin-binding LIM protein 2 1 T(0.023)S(0.974)S(0.002)ESIISVPASSTSGSPSR 272.13 2.1341999999999998e-44 141500000.0 109360.0 86236.0 77732.0 73104.0 83781.0 110390.0 100710.0 90951.0 143670.0 95283.0 True False 108771.21791103826 89106.31312923711 88675.98994134407 82358.9589044781 94450.01374110769 102758.99913010876 95838.27255043932 97738.22545982008 108264.45357936832 89201.95736411949 1.2193815149934175 0.9989277787426574 0.99410363361615 0.9232864539988905 1.0588334217327295 1.1519814381499485 1.0743965197897016 1.095695972912969 1.2137004251760568 1.0 16.444787747189714 2.993863029157543 24.806497519499793 1.1084486386273988 1.0238905951453006 0.13384937916232242 0.08712326092722444 447.53288149850067 1809004.9944653392 0.025163620212884947 0.02915939962741573 985.9684749302816 -2.993863029157543 -0.08455804348209828 TS(ph)SGTSLSAMHSSGSSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSGTSLSAMHSSGSSGK 18 0 Q12888;Q12888-2;A6NNK5;Q12888-3;M0R142 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.071)S(0.456)S(0.456)GT(0.007)S(0.007)LS(0.001)AMHSSGSSGK 166.06 1.7142e-11 392410000.0 206940.0 358830.0 416790.0 430880.0 477410.0 505150.0 511300.0 475010.0 410260.0 523650.0 True False 205825.85803319537 370773.43963268405 475470.40919637657 485429.3638208783 538205.3336692343 470230.1694951943 486566.4656443218 510457.6582519057 309156.9202023501 490230.20868067973 0.41985551764979817 0.7563251571756852 0.9698921053355216 0.9902069583334704 1.0978624412348363 0.9592027605983114 0.9925264845546383 1.0412611242902852 0.6306362087199018 1.0 18.903099862295157 4.6358861285109745 2.0178097599440803 0.9744111761476676 0.32488768743147617 0.6624232298002783 0.1184908247915233 0.3200518306751433 1.6755213728042684 0.029437285483650252 0.3537952169003679 43240.044129646776 -4.6358861285109745 -0.6495234887161914 TS(ph)SLDTLAAPYLAGHWPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 T(0.256)S(0.372)S(0.372)LDTLAAPYLAGHWPR 186.45 3.0883e-14 44338000.0 33426.0 33175.0 27899.0 29031.0 29488.0 37128.0 33889.0 30474.0 41696.0 34091.0 True False 33246.03812997774 34279.20982028901 31826.936697544854 32706.321623384516 33243.12201093066 34561.428749911036 32249.65960144809 32748.124623836517 31420.57949777504 31915.28319322649 1.0416964790409153 1.0740687968441474 0.9972318435920886 1.0247855682610991 1.0416051084261093 1.0829115486979652 1.0104769995677985 1.0260953796200933 0.9844994734197928 1.0 14.961959828836202 1.5631243368675882 1.815575994034056 0.9938010463903646 1.0409941442609265 0.3574760405478564 0.024645245463593993 0.3717470567768316 2.4775524503399855 0.020444041458325124 0.0070730835378289515 36.56994750037322 -1.5631243368675882 0.04719309787056192 TS(ph)SLTQFPPSQSEER ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSLTQFPPSQSEER 15 0 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3;B7Z7F3 Q9H6Z4 RANBP3 Ran-binding protein 3 1 T(0.164)S(0.417)S(0.417)LT(0.001)QFPPSQSEER 61.37 0.094254 104960000.0 48791.0 53198.0 50299.0 48390.0 42288.0 52570.0 47139.0 47619.0 67202.0 48179.0 True False 48528.31467718972 54968.663271129946 57380.66199325455 54516.16903846149 47673.126139386724 48935.959636469044 44858.70648153271 51172.57158438249 50640.967560664794 45104.17497188288 1.075916247385999 1.2187045501973246 1.2721807244900192 1.2086723473480199 1.0569559507319506 1.0849541016319404 0.99455774347933 1.1345417938867641 1.1227556560392347 1.0 15.460973359204381 3.2407463029891113 24.97773242087366 1.0724745803786337 1.201236226777665 0.4985415075569467 0.06260938717092064 48.69335121121002 556454.675249122 0.01785582512565874 0.023042218015289065 1740.7896784386248 -3.2407463029891113 0.12876164639903132 TS(ph)SPHKEES(ph)PKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPHKEESPKK 12 2 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 2 T(0.409)S(0.48)S(0.112)PHKEES(0.999)PKK 68.82 0.027695 549570000.0 940820.0 378170.0 297420.0 298660.0 288900.0 612290.0 668310.0 529030.0 1322500.0 558230.0 True False 935754.7296549284 390757.1598414077 339294.1507790167 336470.3253777004 325689.70255554334 569963.8334756253 635981.2921078756 568508.9049599081 996587.5955920828 522603.28347525233 1.7905641989699452 0.7477127913221613 0.6492384596643734 0.6438350772314537 0.6232063839892927 1.0906242870986778 1.2169485194939311 1.0878402852339324 1.9069677269627714 1.0 18.995356663462488 2.078859038480879 1.5185582716773411 1.3644059559277555 0.8647856266595068 0.19034532266939297 0.3931236352085737 0.6306952044410405 2.748556811722207 0.2481783094912486 0.12766770797197044 119.91100377688659 -2.078859038480879 -0.49962032926824873 TS(ph)SPHKEESPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPHKEESPK 11 1 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 T(0.007)S(0.716)S(0.263)PHKEES(0.013)PK 125.28 0.00020082 169450000.0 360810.0 253350.0 216040.0 208730.0 223240.0 320180.0 313520.0 298360.0 549950.0 283540.0 True False 358867.4390497594 261782.60159669098 246456.55414665712 235155.1965984311 251668.2907528537 298046.7102226491 298353.83983729227 320625.1382413815 414422.1914524509 265444.23444919323 1.351950400408669 0.9862056417985484 0.9284682888594802 0.8858930279137046 0.948102305838644 1.1228223164880835 1.123979356554448 1.2078813424096053 1.5612401313307578 1.0 18.018049280347917 1.975212934972034 1.6859545592776135 1.2856811404763877 1.0136729967942253 0.2350020593618004 0.17686033637549153 0.4736980281629525 2.507338990828265 0.11167639259508816 0.05395395767810012 94.45238636683182 -1.975212934972034 -0.2720081436821624 TS(ph)SPHKEESPKK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPHKEESPKK 12 2 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 T(0.005)S(0.497)S(0.497)PHKEESPKK 159.22 3.7229e-05 564150000.0 659050.0 465550.0 444370.0 418760.0 432090.0 624300.0 663060.0 608450.0 1107700.0 602840.0 True False 655501.7480273389 481045.55031908234 506933.4334667198 471774.9730635697 487114.1003019205 581143.610444125 630985.2546648226 653855.6286464958 834722.1774195461 564366.2350827099 1.1614829294868654 0.8523641572011893 0.8982348729498796 0.8359376301001235 0.8631170151958721 1.0297278155893863 1.1180421780058287 1.1585661721074982 1.47904343940281 1.0 19.106272151358723 2.1687606998200653 1.6575212851094916 1.230609185400929 0.9140451262186803 0.4496970899523969 0.14028198009228512 0.3154240407346304 1.6880359145901258 0.07665251200146359 0.04399302160474789 147.4893629633945 -2.1687606998200653 -0.3165640591822486 TS(ph)SPIPAQHAPRPYASSLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPIPAQHAPRPYASSLEK 20 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 T(0.185)S(0.453)S(0.362)PIPAQHAPRPYASSLEK 89.70700000000002 0.0012324000000000002 238720000.0 349230.0 314870.0 290810.0 286390.0 283960.0 393080.0 368330.0 394470.0 562730.0 404400.0 True False 347349.78448310075 325350.25760706584 331753.52023416694 322646.9446357716 320120.6228372171 365907.30481079087 350512.47074275976 423907.3544780724 424052.73169567675 378590.8457757409 0.9174806743448153 0.8593716970108352 0.8762851081472842 0.8522312365336276 0.8455582759305312 0.9664980252257257 0.9258345114619769 1.1196978458617428 1.120081841458114 1.0 18.53028000192426 2.002659199018541 1.825431729403173 1.0919604807852783 0.8753931364324573 0.7589701594662013 0.048159027745172354 0.14793712479365298 0.9202654519523027 0.027932190174674524 0.014135476881421421 100.6141816098889 -2.002659199018541 -0.216567344352821 TS(ph)SPLFNK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPLFNK 8 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 T(0.003)S(0.499)S(0.499)PLFNK 120.45 0.0015724 402720000.0 1638600.0 1416600.0 1297100.0 1269600.0 1334600.0 1679100.0 1564800.0 1488100.0 2241000.0 1692300.0 True False 1629777.9596655767 1463750.6746472158 1479720.4054046876 1430331.2298249784 1504553.3992060516 1563027.7691762457 1489104.6458834996 1599149.5784186888 1688735.5778615167 1584295.9651490762 1.0287080163788846 0.9239123919055632 0.9339924092184705 0.9028181989281212 0.9496668755730113 0.9865756169044909 0.9399156967135118 1.00937552931798 1.065921781668246 1.0 20.595410442347266 1.6077274963267763 3.9385389207101036 1.034433450936788 0.9498019664115898 0.46522582850507566 0.03616570548038212 0.14306798667847784 5.118680892479628 0.021229960458545295 0.009343753212369865 40.52541736981052 -1.6077274963267763 -0.08463148452519831 TS(ph)SPPRK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSPPRK 7 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.064)S(0.468)S(0.468)PPRK;T(0.064)S(0.468)S(0.468)PPRK 59.245 0.064126 7150770000.0 385600.0 334990.0 321490.0 303570.0 306970.0 271140.0 372190.0 385890.0 494780.0 416770.0 True False 383523.9724441875 346139.9396442691 366752.99755882606 342001.9308742667 346060.80994626187 252396.72999490652 354185.7477961275 414687.0713097153 372848.0987123262 390171.3817852515 0.9829628474783353 0.8871484578404649 0.9399792365107014 0.8765428394809924 0.8869456503007495 0.6468868342933067 0.907769673356181 1.0628331309495096 0.9556008362436486 1.0 18.57374843774862 1.9845322908209995 24.701156353610983 1.0061699669673163 0.8669446112992422 0.3336901137920778 0.08598028577188911 689.6424586594812 1101323.5019323328 0.035946129771656024 0.024031621326744305 96.50110599909283 -1.9845322908209995 -0.13922535566807415 TS(ph)VQT(ph)EDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSVQTEDDQLIAGQSAR 17 0 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 T(0.028)S(0.972)VQT(1)EDDQLIAGQSAR;T(0.035)S(0.965)VQT(1)EDDQLIAGQSAR 382.51 2.9674999999999986e-106 379500000.0 572040.0 479470.0 450280.0 463490.0 396070.0 658470.0 557030.0 499380.0 774950.0 499870.0 True False 568960.2001996187 495428.86910426494 513675.5100960782 522167.78647729976 446507.1668091871 612951.5187716522 530084.3308387569 536646.2714002591 583973.956297985 467967.8686397619 1.215810397097156 1.05868138029289 1.0976726064316644 1.1158197420585314 0.9541406509533349 1.3098153951323903 1.1327365965948653 1.1467587998298348 1.2478932752272438 1.0 18.83604995008852 2.7403252399933393 24.995855193831815 1.1709785553357541 1.0888082335067462 0.14393866419434642 0.09615352259157188 305.3558173694451 4325395.223804777 0.028335740089113947 0.028635303349989514 549.9525751803786 -2.7403252399933393 -0.08217032182900796 TS(ph)VQTEDDQLIAGQSAR ddPTM_BT-474_Trastuzumab_2h_R1 6 TSVQTEDDQLIAGQSAR 17 0 P35221-2;P35221;G3XAM7;P35221-3;P26232;P26232-5;P26232-2;P26232-3;P26232-6;P26232-4;A0A0A0MRI5;A0A0A0MTJ6 P35221-2 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 TS(0.999)VQT(0.001)EDDQLIAGQSAR;T(0.037)S(0.963)VQTEDDQLIAGQSAR;T(0.211)S(0.789)VQTEDDQLIAGQSAR;T(0.033)S(0.967)VQTEDDQLIAGQSAR;T(0.001)S(0.999)VQTEDDQLIAGQSAR;T(0.185)S(0.815)VQTEDDQLIAGQSAR 484.98 1.2961999999999988e-231 5741440000.0 4197780.0 4340680.0 4116870.0 3745850.0 4381240.0 5290630.0 4864090.0 4515080.0 5200680.0 4575270.0 True False 4175179.618897198 4485156.909803535 4696489.511524476 4220074.2259293515 4939164.944356 4924901.200903405 4628795.384071755 4852018.196711681 3919042.099541651 4283272.35151428 0.9747639832944857 1.0471332527379171 1.0964723057743713 0.9852453637316372 1.1531288554672083 1.1497987512193308 1.0806680043204167 1.1327830216064432 0.9149644892779556 1.0 22.03028198311322 4.694108630550231 2.574081695494865 1.0761931096405668 0.9586056842511942 0.09672200942111209 0.07424321911666587 0.8423359987507244 7.698440355757444 0.017907754799302924 0.20527641091080728 49443.43449202993 -4.694108630550231 -0.11758742538937261 TSADAQEPASPVVSPQQS(ph)PPT(ph)SPHTWR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 2 TSADAQEPASPVVSPQQS(1)PPT(0.722)S(0.273)PHT(0.005)WR 195.2 5.6098e-19 867910000.0 215020.0 215950.0 234450.0 227710.0 216550.0 241890.0 250770.0 217280.0 274430.0 264150.0 True False 213862.35621096767 223137.76520546858 267458.52212406887 256538.0626523678 244126.35890759062 225168.71364781237 238639.29706557133 233494.536925484 206800.40367359956 247291.72084980726 0.8648181001613761 0.9023260642882234 1.0815506528280012 1.0373904220116463 0.9871998871157553 0.9105388278832379 0.9650112678479399 0.9442068506098391 0.8362609268233443 1.0 17.915854414573612 2.7497586623946257 23.839962189830718 0.9320048695477845 0.9800623651988427 0.08621330366597113 0.06960663710486069 1027.6077182841086 2187711.0139589636 0.022522845159189227 0.023676031642811964 562.0289187166973 -2.7497586623946257 0.04805749565105821 TSADAQEPASPVVSPQQS(ph)PPTS(ph)PHTWR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2;Q96D71;Q96D71-3 E9PMG1;Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 2 TSADAQEPASPVVSPQQS(0.999)PPT(0.432)S(0.564)PHT(0.005)WR 188.49 4.4471e-18 762100000.0 173790.0 181980.0 181790.0 177450.0 187120.0 215200.0 214730.0 189060.0 213010.0 225200.0 True False 172854.33394988414 188037.09429076687 207384.45185299413 199915.15180564148 210948.622852867 200323.7305263107 204342.68955174083 203168.61722722743 160516.53968776515 210827.54319658002 0.8198849700995241 0.891900040382471 0.9836686834586149 0.9482402003766481 1.0005743066320991 0.9501781763852585 0.9692409561553702 0.9636720807289811 0.761364180666357 1.0 17.685703832101478 4.538227692425332 3.2863532372566953 0.9496533553353199 0.8223604799712574 0.26806364261916416 0.06525468688299162 0.3309543422318887 6.4647331128133505 0.015472193070487368 0.08059211691895712 34532.47391475407 -4.538227692425332 -0.12729287536406253 TSAEAPSHHLQQQQQQQR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSAEAPSHHLQQQQQQQR 18 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 0 ;; 198.85 9.762399999999999e-16 227142000.0 115996.0 143019.0 155425.0 172326.0 175288.0 181004.0 171720.0 127253.0 187928.0 166664.0 False True 115371.49042436713 147779.30095818883 177307.48902168206 194142.45393101737 197609.88778662562 168491.61951758506 163413.24756589654 136749.26503764087 141615.66250618434 156027.36083177093 0.7394311472637222 0.9471370929456714 1.1363871572041484 1.244284674790739 1.2665079171574853 1.0798850830993234 1.0473371253269423 0.8764441333150809 0.9076335185780312 1.0 17.25143951554422 1.8694489660502596 4.689608483836804 0.9186148043892424 1.0819763078678395 0.157455801176835 0.14408686974049617 0.4034187528874731 12.92230359754264 0.07408292604381385 0.04269257380955468 74.03702614207238 -1.8694489660502596 0.16336150347859713 TSALS(ph)PNAK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSALSPNAK 9 0 P50616 P50616 TOB1 Protein Tob1 1 TSALS(1)PNAK;TSALS(1)PNAK;TSALS(1)PNAK;TSALS(1)PNAK 173.72 5.792e-05 1219770000.0 1625950.0 1321240.0 1282390.0 1156330.0 1198800.0 1390670.0 1376810.0 1216950.0 1787050.0 1297640.0 True False 1617196.0658600263 1365216.6746935549 1462939.3652663014 1302721.2594388155 1351460.074155714 1294536.2561850557 1310208.4403750391 1307764.9885468876 1346655.472743161 1214823.504234503 1.3312189468041864 1.1237983706561712 1.2042402539685333 1.0723543419253314 1.1124744207244408 1.0656167350011738 1.078517526050536 1.0765061624082997 1.1085194417535815 1.0 20.2123152962732 7.9999999999999964 0.5583701545148382 1.0709412782971608 12.482064766669522 0.7602981696290836 0.04242302137142931 62.18394311499027 0.5529338479288465 0.017623396128847453 853.7474095925604 99999999.99999918 -7.9999999999999964 11.411123488372361 TSAVSS(ph)PLLDQQR ddPTM_BT-474_Trastuzumab_2h_R1 6 TSAVSSPLLDQQR 13 0 Q5T200;Q5T200-2;A0A087WX14 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 TSAVS(0.001)S(0.999)PLLDQQR;TSAVS(0.251)S(0.749)PLLDQQR;TSAVS(0.001)S(0.999)PLLDQQR;TSAVS(0.004)S(0.996)PLLDQQR;TSAVS(0.003)S(0.997)PLLDQQR;TSAVS(0.001)S(0.999)PLLDQQR 346.75 8.185599999999997e-76 5491900000.0 4397060.0 4449890.0 4398410.0 4302020.0 4016950.0 4827660.0 4721940.0 4423170.0 5489710.0 4713260.0 True False 4373386.717519289 4598001.898634691 5017667.896334933 4846655.290903948 4528484.772171995 4493935.227289253 4493521.722637484 4753249.4058021605 4136844.528845233 4412455.7115750965 0.9911457481707252 1.0420505494418573 1.1371599454635197 1.0984031586288392 1.026295801744258 1.0184657979683316 1.0183720849253464 1.077234473613654 0.9375379152232942 1.0 22.073150367252097 3.1331670051137843 7.58917505780343 1.021074765791637 1.070264389115597 0.224648360331288 0.04787553881083776 0.40447297742288046 26.165931209021156 0.01442464888006012 0.01729048163616712 1358.8358776165298 -3.1331670051137843 0.04918962332395993 TSCSGSGERES(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 TSCSGSGERESPER 14 1 Q9H8Y5;C9JQZ3;C9K022 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 TSCSGSGERES(1)PER 91.401 0.0032523000000000005 80039000.0 71229.0 51313.0 51447.0 61283.0 54176.0 63960.0 66021.0 55408.0 74004.0 62826.0 True False 70845.51097828588 53020.92218563646 58690.29041465964 69041.42151651254 61074.992473690276 59538.59574564506 62827.312005287924 59542.826316123035 55766.705802795106 58816.39089195526 1.2045198609419594 0.9014650743027571 0.997856031705052 1.1738466177453915 1.0384008870228714 1.012278972625445 1.0681939345904554 1.0123509010524332 0.9481490611220539 1.0 15.84393063942851 1.5017175333174129 4.193440607103597 0.9745853622170766 1.0502612616046556 0.13892096675967414 0.0820232439901176 0.38438878170205326 14.434934332599267 0.05141620550605054 0.020646989401705874 31.748084922071584 -1.5017175333174129 0.07567589938757902 TSCSGSGERES(ph)PERK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSCSGSGERESPERK 15 2 Q9H8Y5;C9JQZ3;C9K022 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 TSCSGSGERES(1)PERK;TSCSGSGERES(1)PERK;T(0.003)S(0.01)CS(0.146)GS(0.146)GERES(0.696)PERK;T(0.003)S(0.008)CS(0.027)GS(0.023)GERES(0.939)PERK 167.51 6.819800000000001e-07 2971150000.0 2030659.0 1543846.0 1465660.0 1396992.0 1477177.0 1971088.0 2004815.0 1795569.0 2705560.0 1971488.0 True False 2019726.1575714264 1595231.9808353863 1672012.1882549054 1573851.0439631843 1665286.735035962 1834831.3260020623 1907834.4393129693 1929563.4764946369 2038810.9906465933 1845665.9479642066 1.0943075369620436 0.8643124085346797 0.9059126815982905 0.8527280062240745 0.9022687647636317 0.9941296950436264 1.0336835012952021 1.0454565077840714 1.1046478876068706 1.0 20.815710028685878 2.484098284032839 2.5705125438610277 1.0497198941772166 0.9159025974157425 0.42310761827339793 0.06685698449946281 0.25440625686810986 3.4022980122583832 0.024827947158268898 0.0211094420893313 304.85848287176776 -2.484098284032839 -0.13381729676147402 TSDANETEDHLESLICK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSDANETEDHLESLICK 17 0 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 ;; 228.46 1.4257999999999998e-15 785530000.0 1035760.0 931270.0 858510.0 768000.0 820540.0 1158720.0 1072190.0 1069500.0 1597240.0 1221680.0 False True 1030183.5832437548 962266.7589853981 979380.7456973087 865228.7212551859 925030.9052783853 1078620.4137334875 1020324.0735364475 1149311.5208109592 1203621.6039194688 1143711.3364671308 0.9007374067183266 0.841354569377439 0.8563181236994368 0.7565097010648122 0.808797531146068 0.9430879797565825 0.892116778948943 1.0048965015605484 1.0523823324488484 1.0 20.125291542771173 2.0150329517599856 1.2470243063606288 1.029932213189041 0.8347368894353067 0.7359903923366009 0.04598082956355147 0.2344184498578782 0.6765672933328878 0.03454444733464403 0.01628139227838439 103.52207102752386 -2.0150329517599856 -0.19519532375373427 TSDDEVGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSDDEVGSPK 10 0 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9 Q6ULP2-7 AFTPH Aftiphilin 1 TSDDEVGS(1)PK 89.301 0.011049 0.0 151150.0 114880.0 108940.0 85842.0 96413.0 125950.0 118750.0 108820.0 151880.0 138890.0 True False 150336.2251943438 118703.71135357347 124277.80507654525 96709.58839842153 108690.62406537765 117243.3729544089 113005.60883094696 116940.70097676333 114451.20908773196 130025.92129028862 1.1562019611359764 0.9129234400005687 0.9557925361596904 0.7437716067591869 0.8359150466830457 0.9016923071258837 0.8691006201652434 0.8993645252909844 0.8802184053148493 1.0 16.98843973452991 5.007911004324279 1.6286226906621697 0.8752532975909064 1.4467972133058948 0.6070340103005281 0.06465607628737692 1.3836820209532148 2.025814971679117 0.016382903433994154 1.5358084730002017 101838.26795734721 -5.007911004324279 0.5715439157149884 TSDIFGS(ph)PVTATSR ddPTM_BT-474_Trastuzumab_2h_R1 8 TSDIFGSPVTATSR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BTV5;Q9H910-2;H3BU16;H3BMT0 A6NGP5;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein 1 TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR 404.41 2.0034999999999992e-132 15617630000.0 7839520.0 7980260.0 6989560.0 7260650.0 7260720.0 8766480.0 8836060.0 8447060.0 11127340.0 9113560.0 True False 7797312.895372561 8245878.129930955 7973629.293655385 8179847.545548789 8185329.654340905 8160473.871674204 8408626.020772861 9077422.510501549 8385156.155716908 8531924.798288733 0.913898455473551 0.9664733720560745 0.9345639444987459 0.9587341354895017 0.9593766761730782 0.9564634082699567 0.985548539112698 1.063936066609756 0.9827977102422114 1.0 23.024439818920374 2.058094403889833 3.801777984698981 1.0232801356560257 0.9496494462821553 0.600411706715593 0.02441739023673667 0.1297458524965836 3.8242891544747715 0.009816581068708976 0.006603351909149863 114.31267926730202 -2.058094403889833 -0.0736306893738704 TSEEFVHINR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSEEFVHINR 10 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;H0YAC6;A0A3B3IS13;A0A3B3ISK3;A0A3B3IU76 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 0 ;;; 160.53 7.3499e-06 3210950000.0 2812350.0 3122650.0 2802570.0 3015920.0 2870960.0 3059550.0 3228600.0 2728810.0 3580740.0 3201680.0 False True 2797208.620081458 3226585.517568211 3197147.495624869 3397735.1627707537 3236559.738486894 2848050.509906009 3072420.283550276 2932447.6588164084 2698314.6064577685 2997346.0413038475 0.9332284566198003 1.0764808177318907 1.0666594552539912 1.1335812134967027 1.079808501883549 0.950190758977934 1.0250469052327942 0.9783480513784093 0.9002345972986155 1.0 21.515254220827952 2.741851807662506 24.948997454759045 0.9747167448750375 1.0636664923286785 0.37203148084085325 0.056276593239229386 308.5245381699651 2338784.3686395935 0.017729330248477643 0.018088613229641566 551.8890885354657 -2.741851807662506 0.08894974745364104 TSEIYVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSEIYVHR 8 0 G3V529;Q9GZR7;Q9GZR7-2;A0A1W2PRR2;F5GYL3;A0A087WXU8 G3V529 DDX24 ATP-dependent RNA helicase DDX24 0 73.248 0.044057 95769000.0 340220.0 426690.0 383440.0 412700.0 371880.0 370380.0 393200.0 372210.0 475130.0 411870.0 False True 338388.29332199536 440892.1187104479 437425.0190797729 464947.7776849152 419236.71369455033 344776.5023807383 374179.4138301335 399986.2002440831 358040.57791581604 385584.1039803523 0.8775991796052831 1.1434395613282695 1.1344477496978511 1.2058271409150387 1.0872769633571637 0.8941667947968795 0.970422302080171 1.0373513744862903 0.928566749043317 1.0 18.556686050949118 2.8696506076718347 7.346117493313166 0.9747772104096051 1.1031318205389402 0.3246576408809365 0.08789678192943627 0.3139396454563889 17.339564349577866 0.02707255863082648 0.028767202736082728 740.7140929198312 -2.8696506076718347 0.12835461012933513 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPR 39 1 D6RF40;D6RAG5;D6R9R7;A0A0A0MTL5;Q13309-2;Q13309 D6RF40 SKP2 S-phase kinase-associated protein 2 1 TSELLSGMGVSALEKEEPDSENIPQELLS(0.025)NLGHPES(0.975)PPR 73.042 0.0016999000000000005 68072000.0 37499.0 31949.0 36428.0 35805.0 33864.0 50584.0 54514.0 42965.0 65756.0 50781.0 True False 37297.10955053057 33012.40315142168 41556.74576214788 40337.90932883063 38176.379672346564 47087.24714192791 51876.949556296764 46171.26647184934 49551.314885257474 47540.11310419859 0.7845397731549909 0.6944115399781439 0.8741406582492486 0.8485025948595843 0.8030351040324923 0.9904740242986363 1.0912247819560859 0.9712064918871984 1.042305363822983 1.0 15.536857715195643 2.703821534022681 4.137925959144798 1.0225375470634614 0.8003667179529529 0.8121368325174292 0.052621803165238186 0.09533565178295543 3.715658209335921 0.01796145322115135 0.017430855161452513 505.61684460966336 -2.703821534022681 -0.22217082911050856 TSES(ph)PSKPGEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSESPSKPGEK 11 1 P20810-6;P20810-10;P20810-7;P20810-9;H0YA91;P20810-5;F8W7E0;E9PSG1;A0A0C4DGB5;H0Y944;E7EN75;D6RGF7;D6RBR1 P20810-6;P20810-5;A0A0C4DGB5 CAST Calpastatin 1 T(0.006)S(0.026)ES(0.961)PS(0.007)KPGEK;T(0.015)S(0.073)ES(0.894)PS(0.017)KPGEK;TSES(0.998)PS(0.002)KPGEK 122.63 0.00023424 1539860000.0 1139850.0 627530.0 503016.0 477409.0 494054.0 921920.0 968310.0 866270.0 1618460.0 995380.0 True False 1133713.1742492395 648416.9567001037 573836.2805065487 537848.9304501525 556968.8484125185 858189.8403662456 921469.1459965825 930915.4662299296 1219612.2192529032 931853.9962123083 1.2166210359749756 0.6958353554695409 0.615800632759007 0.5771815462898032 0.5976996940254811 0.9209488222988964 0.9888557110256145 0.9989928358023966 1.3088018339892742 1.0 19.82974440416492 2.279963758035655 1.8111849503273687 1.0924573896947332 0.7252788131197977 0.39969089185476436 0.19181847892912715 0.36018510722021724 2.3863938573588706 0.09726579561304674 0.06423014071569745 190.53017135067748 -2.279963758035655 -0.36717857657493547 TSEVNCYR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSEVNCYR 8 0 P62633-2;P62633;P62633-7;P62633-3;P62633-5;P62633-6;P62633-8;P62633-4 P62633-2;P62633-8 CNBP Cellular nucleic acid-binding protein 0 ;;; 193.96 0.00039056 3717150000.0 1561500.0 1734860.0 1627930.0 1500870.0 1566270.0 1652110.0 1667960.0 1530350.0 2051940.0 1629220.0 False True 1553093.057498959 1792603.7663549825 1857128.3937787798 1690879.9881123304 1765725.2004903818 1537903.5243486206 1587274.4025740328 1644552.4879598434 1546266.8815873105 1525241.7847545815 1.018260234556096 1.1752915401825428 1.2175960640086978 1.1085979973885915 1.157669045091428 1.0083014638863153 1.0406706782095094 1.0782241244619846 1.0137847632046824 1.0 20.540606529387855 2.742818973960296 24.958434773523663 1.03775052234209 1.1407627942002643 0.5021750304322121 0.05285471346767401 318.27737367907 1865437.9043438719 0.016411731932601578 0.016878385325228375 553.1195055379815 -2.742818973960296 0.1030122718581743 TSFDDRLEDDDFDLIEENLGVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSFDDRLEDDDFDLIEENLGVK 22 1 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 129.32 1.3973e-05 61752000.0 65594.0 56332.0 59210.0 53648.0 52413.0 65768.0 70007.0 60922.0 88336.0 60147.0 False True 65240.849192178495 58206.976566586876 67546.25333745412 60439.8312993466 59087.48487380998 61221.61296121927 66620.49395728923 65468.30899564768 66566.77644175592 56308.36696556256 1.158635078727801 1.0337180725234933 1.1995775579633574 1.0733721213458522 1.0493553277783227 1.0872560555460893 1.1831366730637638 1.162674617001186 1.1821826849012913 1.0 15.781061690537996 2.256111005211952 24.841086340405997 1.1487312072377098 1.0982620707833985 0.026827265813973544 0.06769512569544989 477.8570951325894 676364.6726916295 0.02215649799648599 0.018496118273537216 180.34786491955995 -2.256111005211952 -0.05046913645431128 TSFDKPDQMAALFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSFDKPDQMAALFK 14 1 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 136.17 2.6129e-05 278760000.0 374380.0 338500.0 354460.0 340630.0 306380.0 412390.0 371080.0 343090.0 583650.0 405090.0 False True 372364.3796775287 349766.76787242887 404364.8869784485 383753.7230744197 345395.67694346583 383882.449961641 353129.44273673906 368693.11797571933 439817.27800931473 379236.8093850022 0.9818782630340701 0.9222911890848252 1.0662595955128824 1.0119105360493421 0.9107651694032138 1.0122499727391245 0.9311581418201448 0.9721976054318638 1.1597431133400637 1.0 18.532739475961748 1.2713347720971644 24.871499105025176 1.0798715792968714 0.9751450001347486 0.34492016379346835 0.057198293286224514 157.96028385090835 119872.26098915063 0.035975433606276926 0.01313508509022918 18.678189279111425 -1.2713347720971644 -0.1047265791621228 TSFSQEQSCDS(ph)AGEGSER ddPTM_BT-474_Trastuzumab_2h_R1 2 TSFSQEQSCDSAGEGSER 18 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 TSFSQEQSCDS(1)AGEGSER;TSFSQEQSCDS(1)AGEGSER 442.07 1.3431999999999988e-190 919660000.0 353980.0 376080.0 359560.0 369700.0 357620.0 419870.0 389440.0 359270.0 430560.0 382160.0 True False 352074.21101087524 388597.59545483894 410182.922648454 416503.9820938054 403160.7872201918 390845.375167667 370601.29939472827 386080.5517360945 324454.25720841397 357770.2216163635 0.9840791372189828 1.0861652870359109 1.14649822110766 1.1641661517051076 1.1268707199798773 1.0924480338298528 1.035864018308722 1.079129923088144 0.9068788781318021 1.0 18.448673786605152 1.3335225807325992 5.3238432892298375 0.9547108654190058 1.0933512606097546 0.5046226999405459 0.05371818787320421 0.16334713794398978 6.76372247232907 0.04035081105861793 0.014109284941487136 21.553737072789424 -1.3335225807325992 0.13864039519074878 TSFSVGS(ph)DDELGPIR ddPTM_BT-474_Trastuzumab_2h_R1 6 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR 395.76 9.094799999999992e-115 9707460000.0 3601600.0 3645760.0 3346950.0 3255970.0 3645170.0 3909920.0 3715350.0 3402840.0 4471740.0 3847460.0 True False 3582209.3857753794 3767106.9176915437 3818171.467789084 3668175.468157871 4109360.7928846967 3639636.4333616733 3535624.3264847053 3656777.2000714005 3369739.595246083 3601911.8088237727 0.9945300095909824 1.0458631742351616 1.0600402426387925 1.0183968022681091 1.1408832339586445 1.0104735003354288 0.9815965837429224 1.0152322972242744 0.9355419494144953 1.0 21.780331427267363 2.4886645262295266 24.831671954064763 0.9886288395428192 1.0527398669018788 0.3944406126429445 0.040177591884839804 543.3436517330475 1168834.2483957517 0.013060800402929885 0.011695457610503541 308.0807240050384 -2.4886645262295266 0.0641110273590596 TSFSVGS(ph)DDELGPIRK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSFSVGSDDELGPIRK 16 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 TSFSVGS(1)DDELGPIRK;TSFSVGS(1)DDELGPIRK 238.19 5.3714e-20 637730000.0 393240.0 325370.0 319470.0 329860.0 353050.0 430310.0 406760.0 378430.0 547910.0 415050.0 True False 391122.8395330708 336199.74375968135 364448.5991169809 371620.2421786925 398008.82480870426 400563.6825407839 387083.464825903 406670.368228603 412884.92211785086 388561.1536578172 1.006592748274341 0.8652428082292357 0.9379439907622088 0.9564009131647689 1.0243145025228308 1.0308896779052097 0.9961970237683216 1.0466058287101274 1.0625995888447823 1.0 18.567782149352357 3.3292857464887766 2.7262202597339686 1.02937281348263 0.9304861960664981 0.5654234329941381 0.036745125935097364 0.17707700302068966 2.6668973010590786 0.010418303948622797 0.014638503723294154 2134.4488238086183 -3.3292857464887766 -0.09888661741613203 TSGAPGS(ph)PQTPPER ddPTM_BT-474_Trastuzumab_2h_R1 1 TSGAPGSPQTPPER 14 0 Q96MH2;K7ESM2;K7ELS4;K7EJA3;K7ERG7;K7EIM4 Q96MH2 HEXIM2 Protein HEXIM2 1 TSGAPGS(0.87)PQT(0.13)PPER 164.57 4.3029e-06 343880000.0 357280.0 328850.0 310000.0 322810.0 328560.0 358780.0 338630.0 312750.0 424450.0 367580.0 True False 355356.44417753984 339795.5734559769 353645.30543169635 363677.71290154464 370400.16847230645 333978.3830772755 322249.17320777767 336088.9931123208 319849.9848386084 344120.72969892947 1.0326505017249048 0.9874312824840961 1.0276780063238269 1.056831749774928 1.0763669157518316 0.9705267781149729 0.9364422000665662 0.9766601198549252 0.9294702621328408 1.0 18.392555276517648 2.5998727661767016 6.589033967161541 0.9591242419769538 1.0339475777071379 0.6313587921320121 0.02813691149750743 0.16411817660968486 8.171262533454264 0.009410014554659224 0.008845653462109828 397.99055549056186 -2.5998727661767016 0.07482333573018407 TSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSGGDHAPDSPSGENSPAPQGR 22 0 H0YDE3;E9PRI1;Q96NY9;E9PL60;E9PII7;H0YDU2 H0YDE3 MUS81 Crossover junction endonuclease MUS81 1 TSGGDHAPDS(1)PSGENSPAPQGR;TSGGDHAPDS(1)PSGENSPAPQGR 222.42 5.5055e-26 1518630000.0 753770.0 867010.0 916100.0 887280.0 906610.0 1065060.0 1098530.0 842610.0 1045120.0 1019130.0 True False 749711.7860717191 895867.9037313871 1045078.9171160568 999609.557025132 1022061.4096015283 991434.9090815629 1045389.9071078745 905489.8368868838 787564.1798905096 954088.250878909 0.7857887206776547 0.9389780273534559 1.0953692346104533 1.0477118401828014 1.071244099966646 1.0391438194194824 1.0956951897739629 0.9490629782441444 0.825462612253115 1.0 19.863763192676842 4.625446421927048 3.2597206813163266 1.0182526669900385 0.7777560458063955 0.4501604357354524 0.07688468883289934 0.2522577805241156 4.32038175874697 0.01960752527222545 0.1272411118125356 42213.01984499038 -4.625446421927048 -0.240496621183643 TSGHDHPDVATMLNILALVYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSGHDHPDVATMLNILALVYR 21 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;E9PQ02;Q9H0B6;Q9H0B6-2;A8MZ87;A8MX29 Q07866-6;Q9H0B6 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 0 ; 198.38 4.967999999999998e-22 560880000.0 579240.0 776530.0 759470.0 840810.0 805760.0 861930.0 872140.0 300530.0 969260.0 695280.0 False True 576121.4361996143 802376.3316277019 866396.7745684214 947256.4597898095 908368.7598863096 802346.8078649752 829951.2563016599 322957.07466041844 730398.8604185878 650906.6351408446 0.8851061044645088 1.2327057189301533 1.3310615191085717 1.455287761177669 1.3955438627380943 1.2326603610229931 1.275069589853041 0.49616497547384236 1.1221253878607989 1.0 19.312091095125446 1.7703894965171492 24.99999994451234 0.8236765260813056 1.2719065098041136 0.41229643111496084 0.2079762581491253 23.072183274169525 18131.243210238095 0.09454348755218503 0.05244445993879582 58.937199601039836 -1.7703894965171492 0.448229983722808 TSGHVDK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSGHVDK 7 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;; 89.75200000000002 0.017641999999999998 1357370000.0 2371640.0 1933640.0 1906980.0 1805040.0 2038520.0 1760300.0 2193200.0 2390740.0 3094310.0 2558370.0 False True 2358871.353753973 1998000.038489937 2175466.208232699 2033557.8789250804 2298113.4387453324 1638614.6043004857 2087106.5371623817 2569149.1587317386 2331758.7621297105 2395092.6362692444 0.9848768761730685 0.8342057456291774 0.9083014891738592 0.8490518688632793 0.9595092080968638 0.6841550007238554 0.8714095252755641 1.072672146298949 0.9735568164752963 1.0 21.19165002624666 1.7529960261111497 24.999999999985345 1.0183463371885704 0.8657596691272907 0.40660107168667436 0.08023007690517582 4.300005384199015 7457.028571257821 0.03599011438229732 0.01995834143379472 56.62341078494602 -1.7529960261111497 -0.15258666806127963 TSGNVEDDLIIFPDDCEFKR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSGNVEDDLIIFPDDCEFKR 20 1 Q16186 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 0 ;; 155.16 5.3036000000000006e-08 121456000.0 220992.0 203398.0 170848.0 182941.0 163033.0 201130.0 201774.0 187153.0 297468.0 220627.0 False True 219802.20362651933 210167.97947331273 194901.9133625627 206101.31184263647 183794.2861777015 187226.35650909317 192013.42076846716 201119.30720367766 224160.9972669838 206546.39597172206 1.064178353693531 1.0175339951324376 0.9436229203885329 0.9978451130701572 0.8898450409314548 0.9064615028902564 0.929638204845537 0.9737246019592256 1.0852815717862891 1.0 17.656106361263202 -1.0578675748618163 5.344154927344383 1.0000002541564568 0.9724575360741913 0.0016017680045840033 0.06137200016319151 1.9020644877682436e-07 3.358069770876883e-08 0.060824626174236736 0.014336369639828792 0.0875250616091166 1.0578675748618163 -0.027542718082265494 TSIDAYDNFDNISLAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSIDAYDNFDNISLAQR 17 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;; 460.35 9.533299999999993e-206 1219660000.0 673780.0 739200.0 692878.0 687704.0 700580.0 812300.0 824620.0 729960.0 836650.0 771350.0 False True 670152.4433439953 763803.8251441644 790429.1997964621 774767.255888121 789794.7103370107 756147.6129485219 784729.9802456889 784433.3218617736 630468.818035627 722121.7826140407 0.9280324447741775 1.0577216247088366 1.0945926557362007 1.0729038709835157 1.0937140096757612 1.0471192410389694 1.08670033107852 1.0862895161840551 0.8730782441617604 1.0 19.461882636144004 1.2500707452149233 24.982263059513624 0.9365391098999424 1.0633361745401564 0.4421666282611313 0.05451629108123346 155.81648261217592 338197.98390112387 0.03564528324652214 0.012773767879272441 17.785691097967074 -1.2500707452149233 0.126797064640214 TSIFWNDVKDPVSIEER ddPTM_BT-474_Trastuzumab_2h_R1 4 TSIFWNDVKDPVSIEER 17 1 P55884;P55884-2;C9JZG1;C9JQN7 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;; 239.75 2.4645e-20 3103080000.0 2178180.0 1938060.0 1890620.0 1826980.0 1926220.0 2290810.0 2245310.0 2149460.0 2997200.0 2186640.0 False True 2166452.920898547 2002567.1555179893 2156802.8624363677 2058275.4806755227 2171512.6993995816 2132451.696686699 2136695.777382852 2309863.619936722 2258580.2204223773 2047086.7631233088 1.058310258229171 0.978252212652973 1.0535962135506467 1.0054656782280897 1.0607819553707787 1.0417006914905482 1.043773921005099 1.1283662527388363 1.1033143592684787 1.0 20.965140819743656 1.9223976314793685 7.805322129467292 1.0905181092578538 1.0323810514412965 0.17979601106468635 0.03932104090422465 0.35184642124810767 31.88868130895606 0.01572428261204015 0.009844165634576626 83.63684302521027 -1.9223976314793685 -0.0581370578165572 TSISDPPES(ph)PPLLPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSISDPPESPPLLPPR 16 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 T(0.001)S(0.001)IS(0.002)DPPES(0.997)PPLLPPR 70.26 0.027859 0.0 149590.0 142640.0 140740.0 129160.0 127460.0 162250.0 148420.0 145400.0 182900.0 148150.0 True False 148784.62406101133 147387.68617229903 160554.96866599025 145511.6427569269 143691.27548539118 151034.0393954175 141240.35758054015 156250.48632623977 137826.74573443644 138694.94016240357 1.0727473106574281 1.0626752929826913 1.1576122999007021 1.0491488917082439 1.0360239192369758 1.0889657489924691 1.0183526335939583 1.126576687969148 0.993740258823065 1.0 17.08155563098253 -0.8474980207192417 0.21648866789698795 0.9467216119906358 1.0927196076546353 0.24177259397249284 0.04387064112414925 23.736311638731657 1.2611714035437154 0.8636029719440894 0.10742924986951961 0.14206986876262342 0.8474980207192417 0.1459979956639995 TSISDPPES(ph)PPLLPPREPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSISDPPESPPLLPPREPVR 20 1 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 TSISDPPES(1)PPLLPPREPVR;TSISDPPES(1)PPLLPPREPVR 172.91 3.429e-12 638120000.0 738370.0 871050.0 861720.0 873440.0 898590.0 920600.0 924220.0 843800.0 1066720.0 991640.0 True False 734394.6979606185 900042.3726891559 983042.6857954895 984017.4144441786 1013020.1101397906 856961.0888592994 879511.9477367386 906768.6407295815 803841.1493156805 928352.6862142823 0.791072949824056 0.9695047863322583 1.0589108001660736 1.0599607552781376 1.091201786974703 0.9230986257538504 0.9473898883443632 0.9767501663912687 0.8658790578757888 1.0 19.824313471587732 -0.09030236994707329 7.742260332670116 0.999999999204174 0.9726928737696497 0.007248531727731433 0.08753000661353509 0.0 0.0 0.08576728863777416 0.02021554379991802 0.8122647940750879 0.09030236994707329 -0.027307125434524293 TSKEPPSS(ph)PLQPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSKEPPSSPLQPQK 14 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 TSKEPPS(0.174)S(0.826)PLQPQK;TSKEPPS(0.037)S(0.963)PLQPQK;TSKEPPS(0.092)S(0.908)PLQPQK;TSKEPPS(0.386)S(0.614)PLQPQK 157.54 3.1909e-06 2275140000.0 2852170.0 2446910.0 2340030.0 2304580.0 2253450.0 2972820.0 2763360.0 2428800.0 3638760.0 2800590.0 True False 2836814.2336258763 2528353.920161667 2669485.884094624 2596339.5917060906 2540413.500255417 2767315.9506655475 2629685.719739667 2610049.389196498 2742036.3548859325 2621853.9484942695 1.0819878945793524 0.9643382010709255 1.0181672726765385 0.990268581969323 0.9689378394682802 1.0554805893191788 1.002987111944163 0.995497628956582 1.0458387113670782 1.0 21.322155891172283 2.7539720529716574 24.829608233484198 1.0162576088026938 1.002437418810797 0.03704942597518701 0.03547173055473173 2893.7429894631687 4662150.036041159 0.010378848352915183 0.010975123373857918 567.5080848550793 -2.7539720529716574 -0.013820189991896825 TSKEPVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSKEPVSR 8 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 0 ; 74.92 0.036234 233380000.0 117124.0 129539.0 149517.0 157056.0 147298.0 170108.0 140050.0 122652.0 175278.0 157483.0 False True 116493.41739769964 133850.62730702103 170567.69397493868 176939.27349668535 166055.52719635316 158348.8343511599 133275.24645704534 131804.91505423645 132083.08550486888 147432.30011202046 0.7901485448520225 0.9078785802386591 1.156922152373257 1.2001391375040966 1.1263171440056392 1.0740443866835487 0.903975901859915 0.8940029759699186 0.8958897433229415 1.0 17.169693105426646 2.2352280068866284 24.83774100664606 0.9120429211984701 1.052618499539228 0.19401553020294138 0.11694450362143421 126.2768542728661 941118.6422491603 0.0471148528143245 0.03623209633597212 171.88105348894683 -2.2352280068866284 0.14057557834075796 TSLDIEEYS(ph)DTEVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSLDIEEYSDTEVQK 15 0 P51580 P51580 TPMT Thiopurine S-methyltransferase 1 TSLDIEEYS(1)DTEVQK 312.04 3.6229999999999995e-56 96871000.0 197630.0 143790.0 129580.0 134350.0 130120.0 181630.0 166830.0 158670.0 272280.0 181630.0 True False 196565.98203875736 148575.9632271095 147823.73767044913 151358.69622478416 146690.01071833604 169074.34561103064 158759.7955475107 170510.7611099343 205180.2423650753 170038.21789873374 1.156010598486878 0.8737798188145791 0.8693559571324463 0.8901451573370749 0.8626884739858734 0.9943314373697028 0.9336712505541555 1.0027790411887403 1.206671328955414 1.0 17.375499518306988 1.488992643795261 4.161700644541084 1.1060273634017708 0.9332360882353902 0.3130641607964657 0.09485500522215144 0.19941899566753618 7.21086073563003 0.05999483314078623 0.023600076237169997 30.83135726768117 -1.488992643795261 -0.1727912751663806 TSLS(ph)PTSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSLSPTSK 8 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 TSLS(0.994)PT(0.005)SK 89.31700000000002 0.014676 161980000.0 305510.0 272920.0 244170.0 247970.0 245370.0 326910.0 300280.0 259120.0 387300.0 282810.0 True False 303865.168105352 282003.977216376 278547.01363631425 279362.97657506313 276616.41507806716 304311.48116336536 285754.309219004 278456.8501846988 291855.1045541126 264760.8236741772 1.14769686802039 1.0651272847051523 1.0520703545593388 1.0551522415523822 1.0447784956979882 1.1493825896910654 1.0792922655757484 1.0517298077580253 1.1023349319734645 1.0 18.014330138604837 -1.905200421169175 2.548965777700567 0.9545129157752689 1.0793741225013895 0.30930560284155517 0.03686817325794714 13709433.71450122 7304583.459092604 3732756.261879071 0.008804671411266543 0.012439404172118418 1.905200421169175 0.12486120672612067 TSLVLNSDTCFENLTDPSS(ph)PTISSYENLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSLVLNSDTCFENLTDPSSPTISSYENLLR 30 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 TSLVLNSDTCFENLTDPS(0.107)S(0.783)PT(0.107)IS(0.003)S(0.001)YENLLR;TSLVLNSDTCFENLTDPS(0.142)S(0.757)PT(0.101)ISSYENLLR 189.23 1.9091e-18 120209000.0 50821.0 48789.0 49621.0 46575.0 48592.0 59305.0 54088.0 43834.0 58783.0 59265.0 True False 50547.38538274391 50412.912371426675 56607.20548653615 52471.39022455764 54779.90317265129 55205.38493895375 51471.55680377482 47105.1156645419 44296.71730184455 55482.6569606808 0.9110483915463098 0.9086246970319586 1.0202684692380952 0.9457259817557553 0.9873338115633588 0.9950025460762714 0.927705333943388 0.8490061263274422 0.7983885366779847 1.0 15.759749256832713 1.9315341089762423 4.541426182305424 0.8685786990823804 0.9621896520328516 0.2611972789131838 0.05786749674198591 0.24333546788980545 9.366985019699854 0.025726607217324643 0.015224009056909875 85.41499287119701 -1.9315341089762423 0.09361095295047117 TSMTEEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSMTEEYR 8 0 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 ; 117.4 0.0048542 491840000.0 786440.0 868850.0 791410.0 735880.0 714820.0 801270.0 830950.0 706560.0 936620.0 845630.0 False True 782205.8944216986 897769.1470190828 902833.6489409637 829042.3325485234 805848.0899299183 745880.0908866947 790753.7739627406 759287.095038982 705802.5510649952 791661.169419734 0.9880564118043508 1.1340320603031762 1.1404293703109325 1.0472186392016534 1.017920445082058 0.9421708676622405 0.9988538083058203 0.9591061483987129 0.8915462553030473 1.0 19.59452356409491 3.1433727450568427 2.0211809875931963 0.9594401001177952 1.0911560389155746 0.5681185943718828 0.0490618393125761 0.22169514335028695 1.8574284561722212 0.01567936811886963 0.020279957618446812 1391.146107975302 -3.1433727450568427 0.13171593879777932 TSNKPLMIIHHLDECPHSQALK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSNKPLMIIHHLDECPHSQALK 22 1 O95994;B5MC07;C9J3E2 O95994 AGR2 Anterior gradient protein 2 homolog 0 ; 264.8 5.507299999999997e-38 4799600000.0 3205500.0 2677000.0 2687500.0 2394300.0 2407900.0 3377200.0 3239400.0 1219330.0 4156100.0 2292400.0 False True 3188241.944164534 2766102.3267193288 3065876.639831244 2697418.1345068924 2714531.7922585453 3143742.113073678 3082697.846290269 1310322.5962322836 3131884.8438867754 2146097.0693776202 1.4856000642548481 1.2888989814060523 1.4285824642220704 1.2568947476775403 1.2648690644015343 1.4648648273795837 1.436420509713602 0.6105607313523261 1.4593397887612973 1.0 21.033283900937054 1.776445056040242 24.999999999548834 0.9843924694395987 1.3685579080564654 0.3744099683470151 0.2064743603260197 42.66427547311778 28165.742849764785 0.08905278612389197 0.04944179539986642 59.76474296511072 -1.776445056040242 0.3841654386168667 TSNRYS(ph)PESQAQSVHHQR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSNRYSPESQAQSVHHQR 18 1 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 TS(0.002)NRYS(0.954)PES(0.044)QAQSVHHQR;T(0.023)S(0.142)NRYS(0.828)PES(0.007)QAQSVHHQR;T(0.01)S(0.01)NRYS(0.979)PESQAQSVHHQR 251.52 2.4504e-26 502360000.0 237491.0 264882.0 267700.0 280111.0 289356.0 333032.0 329741.0 212904.0 314019.0 282212.0 True False 236212.37484373085 273698.4372454497 305389.83310988796 315573.0238795718 326203.7714526193 310010.2817130032 313790.168097055 228791.97758460598 236633.2250890211 264200.9885461508 0.8940631757040876 1.0359478166662495 1.1558996610512011 1.1944430095288887 1.2346803592509563 1.1733880460437807 1.187694905396775 0.8659769929083382 0.8956560927011289 1.0 18.01127633908348 1.7305610170818122 8.68208732772594 0.9135019742278269 1.1315880358159478 0.4762676489026061 0.09794560851163792 0.0925106496501518 22.96378394030865 0.05068045524070669 0.027125722754350302 53.772597671422254 -1.7305610170818122 0.21808606158812094 TSNRYS(ph)PESQAQSVHHQRPGSR ddPTM_BT-474_Trastuzumab_2h_R1 8 TSNRYSPESQAQSVHHQRPGSR 22 2 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 T(0.021)S(0.021)NRYS(0.958)PESQAQSVHHQRPGSR;T(0.003)S(0.003)NRYS(0.994)PESQAQSVHHQRPGSR;T(0.001)S(0.001)NRYS(0.998)PESQAQSVHHQRPGSR;T(0.001)SNRYS(0.999)PESQAQSVHHQRPGSR;T(0.03)S(0.03)NRY(0.001)S(0.938)PESQAQSVHHQRPGSR;T(0.014)S(0.014)NRYS(0.972)PESQAQSVHHQRPGSR;T(0.015)S(0.015)NRYS(0.928)PES(0.041)QAQSVHHQRPGSR;T(0.011)S(0.011)NRYS(0.976)PES(0.002)QAQSVHHQRPGSR 209.68 2.5625e-23 3609374000.0 269767.1 470085.0 525644.0 571475.0 577282.0 598375.0 626912.0 428243.0 539520.0 579648.0 True False 268314.7039075421 485731.4950526168 599650.1062204468 643823.6764053475 650795.4408815133 557010.7446732385 596585.8715235926 460200.66723389196 406562.525197611 542654.3683783805 0.49444862060052996 0.8951028930332452 1.105031381231459 1.1864341538966916 1.1992816768918526 1.0264558384331435 1.0993846291265952 0.8480548467878628 0.7492108216368843 1.0 19.049674072481306 4.692477288362776 2.9696314327573647 1.0268387388096698 0.43356889342831223 0.5895638522591495 0.1332987737188394 0.25758707507308803 3.4828742167823306 0.03656258631782578 0.3425449375890429 49258.0582939308 -4.692477288362776 -0.5932698453813576 TSPADGKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPADGKPR 9 1 Q12955;A0A087WY90;H0Y951;A0A087WX55;Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;H0Y3A4;A0A087WTF3;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 0 ; 130.75 0.00032148 134252000.0 279630.0 269250.0 260880.0 247690.0 267980.0 267940.0 316900.0 277080.0 388810.0 299850.0 False True 278124.5031498138 278211.8234849379 297609.63639039005 279047.52860377193 302105.6645580982 249417.9384629163 301570.336324439 297757.11658373143 292992.98528707586 280713.31628549926 0.9907777330625366 0.9910887989438405 1.0601906611644543 0.9940658758060728 1.0762071018064632 0.8885148085003776 1.0743000735231496 1.060716037713358 1.0437445190134393 1.0 18.09873797748703 TSPADGKPRLS(ph)LHEEEGSSGSEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPADGKPRLSLHEEEGSSGSEQK 24 2 Q12955;A0A087WY90;H0Y951;A0A087WX55;Q12955-4;Q12955-5;Q12955-6;A0A087WZ65;H0Y3A4;A0A087WTF3;Q12955-7 Q12955;Q12955-4;Q12955-7 ANK3 Ankyrin-3 1 T(0.002)S(0.002)PADGKPRLS(0.776)LHEEEGS(0.218)S(0.001)GSEQK 192.22 3.9827e-18 241350000.0 104420.0 92770.0 93845.0 91290.0 97859.0 145060.0 144880.0 129880.0 245020.0 148020.0 True False 103857.81432215274 95857.7933693507 107057.56028463734 102847.30463982535 110320.76359426409 135032.34363451012 137871.60090465355 139572.30511727658 184638.10409978998 138573.23687370238 0.7494796012942256 0.6917482446968952 0.7725702502151344 0.7421873585414033 0.7961188327787422 0.9744474956414602 0.9949367137199204 1.0072096767464902 1.332422538906786 1.0 17.080289126155165 2.456349095016327 0.9393823458333284 1.1261291750577682 0.7237985952980835 0.7685680507834654 0.08878706410159365 0.2596288755887078 0.4590272795556624 0.05809652874590001 0.04034755999869248 285.9888458040052 -2.456349095016327 -0.40233057975968467 TSPDTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPDTLR 7 0 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 0 95.541 0.031151 163310000.0 281890.0 303910.0 270470.0 269450.0 286290.0 315930.0 316190.0 249930.0 313290.0 275800.0 False True 280372.335560923 314025.4606325256 308549.8250326161 303562.34237266885 322747.3345262257 294090.502719225 300894.68173690175 268581.0457188245 236083.87737092178 258198.20787574066 1.0858802540405461 1.2162185911981702 1.195011489704481 1.175695001410544 1.2499983527443757 1.1390106272959017 1.1653631689097896 1.0402126642493221 0.9143513400547632 1.0 17.97811946153523 1.6098579509499185 2.534034270017317 0.957168444210717 1.1812701968095873 0.789578695657529 0.04621301957916311 0.0984315554695288 1.4339665780919677 0.03092227029789173 0.01198353451768114 40.72470536412549 -1.6098579509499185 0.22410175259887033 TSPDTLRR ddPTM_BT-474_Trastuzumab_2h_R1 7 TSPDTLRR 8 1 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 0 ;;;;;; 168.27 0.00049359 2328263000.0 1686653.0 2305880.0 2276130.0 2343580.0 2340860.0 2174730.0 2521810.0 2078500.0 3093800.0 2404010.0 False True 1677572.247652766 2382629.8218661016 2596589.319523377 2640276.9877073304 2638954.6456357506 2024396.0338637677 2399820.416050277 2233608.2244091416 2331374.444796058 2250584.0236234926 0.7453941865951025 1.058671792235516 1.15374022576718 1.173151928563157 1.172564373485142 0.899498091435148 1.0663100736787914 0.9924571582148621 1.035897536072655 1.0 21.101867996834606 2.740312566697468 24.9918882486583 1.0035053696481093 1.0720072981223245 0.055611191684986294 0.12240169504783092 494.37449419142405 7052394.1562870685 0.03945731640152718 0.039827026551364414 549.9365270602685 -2.740312566697468 0.06850192847421521 TSPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSPGSPR 7 0 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 TS(0.001)PGS(0.999)PR;TS(0.001)PGS(0.999)PR;TS(0.001)PGS(0.999)PR;TS(0.001)PGS(0.998)PR 94.85 0.014579 1457710000.0 1360190.0 1617460.0 1343130.0 1405970.0 1633760.0 949320.0 1384260.0 1624110.0 2109560.0 1618390.0 True False 1352866.8881713152 1671296.1783247828 1532231.0293047559 1583965.6578426482 1841809.6519458087 883695.742858908 1317298.0554132753 1745309.335263476 1589687.2046557523 1515102.964626613 0.8929207583622676 1.103090824415793 1.0113048849339186 1.0454508339194002 1.215633323243949 0.5832578798211836 0.8694445764865324 1.1519410733207798 1.0492271758226808 1.0 20.53098441022277 1.7317250098133332 24.99999767237505 1.0766294596987955 0.9662321415840807 0.08192497826910128 0.1621557549089753 1.8109139581012186 6579.402835161022 0.07809045177353538 0.04330506383884033 53.91691188282568 -1.7317250098133332 -0.11039731811471487 TSPLKDNPS(ph)PEPQLDDIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 TSPLKDNPS(1)PEPQLDDIKR 168.56 8.2564e-12 204690000.0 271390.0 186920.0 222180.0 185020.0 210260.0 267040.0 270920.0 296450.0 422450.0 261640.0 True False 269928.86639426387 193141.51920447376 253461.01277682066 208443.51302947197 237035.3646913414 248580.15334454458 257814.56458509614 318572.6043425981 318342.8580399813 244941.91119872656 1.1020117589237917 0.7885196872158556 1.0347800894359087 0.8509916167852439 0.9677207282792433 1.014853489662152 1.052553902773812 1.3006047139239205 1.2996667515250298 1.0 17.902080124227947 2.0327692837898397 2.553043493912176 1.228259991502872 0.9481551971797214 0.44970525129176697 0.11629798672660295 0.20920183656864177 2.613481930520438 0.054639522785309945 0.031596816166692104 107.83736907974374 -2.0327692837898397 -0.2801047943231506 TSPT(ph)TPEASATNS(ph)PCTSKPATPAPSEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 TSPT(0.5)T(0.5)PEAS(0.277)AT(0.198)NS(0.523)PCT(0.002)SKPATPAPSEK;TSPT(0.5)T(0.5)PEAS(0.003)AT(0.013)NS(0.984)PCT(0.001)SKPATPAPSEK 190.14 1.4737e-17 1962320000.0 1743280.0 1383760.0 1296740.0 1110880.0 1300440.0 1867380.0 1749600.0 1842250.0 2591130.0 1945700.0 True False 1733894.374176614 1429817.615099415 1479309.720533865 1251517.294098908 1466043.3256882338 1738292.4159396903 1664965.1638789452 1979728.0497559495 1952580.7308631472 1821523.760202421 0.9518922629831251 0.7849568840872672 0.8121276004489084 0.6870716273060474 0.8048444701733214 0.9543067479649667 0.9140507525929401 1.0868527180430232 1.0719490865417873 1.0 20.79671438323695 2.2876382833096365 1.4671598650315536 1.0549822293182733 0.8023067899226097 0.662399200659427 0.07238630792720584 0.2335946273164207 0.9981032093667896 0.040974114518435995 0.02552826652434045 193.92700188537125 -2.2876382833096365 -0.2526754393956636 TSPT(ph)TPEASATNSPCTSKPATPAPSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 T(0.015)S(0.015)PT(0.483)T(0.483)PEAS(0.003)ATNSPCTSKPATPAPSEK 117.8 0.00074603 590140000.0 107800.0 80480.0 74254.0 68993.0 82833.0 112590.0 93541.0 99526.0 141220.0 99342.0 True False 107219.61677770599 83158.72814881257 84708.31777266192 77727.50672598825 93381.29156034392 104806.91830835176 89016.06446867886 106953.13550278773 106418.22325105037 93001.90850903494 1.1528754462849526 0.8941615229405091 0.9108234350312573 0.8357624910292801 1.0040793039346296 1.126932984371713 0.9571423414394892 1.1500101150332571 1.1442584884235152 1.0 16.504972701880533 2.997557015121887 24.93584403897355 1.0788391522303702 0.9391059584651863 0.280374761927203 0.09585452908846394 112.79229375393373 1151303.7675111527 0.027577170556041298 0.032445145222583495 994.3906111411583 -2.997557015121887 -0.1397331937651839 TSPTT(ph)PEASATNS(ph)PCTSKPATPAPSEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 TS(0.001)PT(0.125)T(0.874)PEAS(0.006)AT(0.005)NS(0.988)PCT(0.001)SKPATPAPSEK;TSPT(0.11)T(0.889)PEAS(0.009)AT(0.1)NS(0.89)PCTSKPATPAPSEK;T(0.008)S(0.009)PT(0.446)T(0.537)PEAS(0.023)AT(0.003)NS(0.973)PCT(0.001)SKPATPAPSEK 191.34 1.1405e-17 2583280000.0 1767120.0 1449920.0 1362650.0 1234700.0 1260280.0 2061230.0 1847520.0 1834800.0 2549010.0 1843160.0 True False 1757606.0222654906 1498179.710704851 1554499.2756338771 1391012.8934033562 1420769.1877352037 1918742.0217135102 1758148.39938822 1971722.0929256177 1920840.6404840667 1725527.9507913322 1.0185902937471674 0.8682442437503151 0.9008832774461748 0.8061375608348932 0.8233823086340819 1.1119738865044577 1.0189046190656765 1.1426775741426733 1.1131901048622037 1.0 20.718606412637705 2.7335164407722092 24.989313329346462 1.0858494188796914 0.8792765612431227 0.6752890854456487 0.06706827678947012 234.26802900939796 1160582.3784061228 0.021478001095299327 0.020815635268938655 541.3977427976756 -2.7335164407722092 -0.20657285763656874 TSPTTPEASATNS(ph)PCTSKPATPAPSEK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-3;Q12873;Q12873-2 Q12873-3 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 TSPTTPEASATNS(1)PCTSKPATPAPSEK;TSPTTPEAS(0.023)AT(0.018)NS(0.941)PCT(0.014)S(0.002)KPATPAPSEK;TSPTTPEASATNS(1)PCTSKPATPAPSEK 272.18 5.350899999999998e-61 1182770000.0 816020.0 671700.0 603660.0 559860.0 570860.0 911960.0 894240.0 811500.0 1186430.0 939950.0 True False 811626.6389883453 694057.1284487752 688650.0808932185 630738.2185962603 643555.6372476898 848918.351722929 850982.194871461 872058.2507135036 894050.2238474964 879961.5862683177 0.9223432609487391 0.7887357121940815 0.7825910717462109 0.7167792645029573 0.7313451488000033 0.9647220571558871 0.967067435841432 0.9910185448113366 1.016010514321341 1.0 19.747081020334683 2.668803903122643 5.824290035599738 0.9876904787266589 0.7843193989856623 0.779457897245201 0.053065419182169324 0.10763013838404469 6.828600655055147 0.018181120498378944 0.01717441815583412 466.4487172864447 -2.668803903122643 -0.20337107974099666 TSQTWHGGIATIFQSPGDEVWGVVWK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSQTWHGGIATIFQSPGDEVWGVVWK 26 0 O75223;B8ZZK2;H7BZK5;O75223-2;O75223-4 O75223 GGCT Gamma-glutamylcyclotransferase 0 ;; 276.79 1.1638999999999999e-60 2489000000.0 864289.0 901583.0 858956.0 751089.0 801738.0 1001378.0 1059918.0 919572.0 1135719.0 1002775.0 False True 859635.7640555359 931591.6451365683 979889.5386206087 846176.7903891092 903834.5820265703 932155.0958502599 1008645.7170600379 988195.1321320011 855836.2703049117 938777.0409811308 0.9156974729133948 0.9923460038636513 1.04379367607511 0.9013607634723964 0.9627787457200258 0.9929462003843317 1.0744252075081493 1.0526409243021353 0.9116501926916146 1.0 19.840423033737505 2.4751018603962653 24.95741742638284 1.0220209577218253 0.9670577643012986 0.12314373164494741 0.054635699654006394 112.75221157092105 1393450.3791007588 0.01914491684159958 0.016119212759717706 298.608289933428 -2.4751018603962653 -0.05496319342052669 TSQVGAASAPAKES(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 9 TSQVGAASAPAKESPR 16 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR 328.58 4.6401999999999984e-71 55834690000.0 22311660.0 17393190.0 16505050.0 14918160.0 15735510.0 22856170.0 23100410.0 21474320.0 32387910.0 24177780.0 True False 22191536.50161846 17972111.814744607 18828817.575533606 16806797.526406594 17739333.926825143 21276176.76553691 21982954.91616416 23076842.80278745 24406343.556259204 22634733.380761117 0.9804196112369779 0.7940058984754993 0.8318550635784192 0.7425224429942654 0.7837217973109891 0.9399791200377496 0.9712045000207093 1.0195323450287297 1.0782695402546205 1.0 24.432034977092002 2.4026158956984003 2.0754178900060305 1.0249674966607965 0.8211682959460629 0.6669684169893598 0.06358448559997429 0.1888805453548909 1.6631569706471128 0.027290155534084412 0.021029029853407072 252.706199118242 -2.4026158956984003 -0.20379920071473356 TSQVGAASAPAKES(ph)PRK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSQVGAASAPAKESPRK 17 2 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;A0A6I8PRA0;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK 225.26 1.2813e-15 3207010000.0 3523640.0 2341560.0 2158250.0 1995210.0 2078160.0 3619850.0 3567760.0 3095280.0 5721900.0 3477280.0 True False 3504669.113753207 2419497.40909709 2462112.840154707 2247803.381426508 2342801.3577806433 3369618.289710341 3395173.8186332583 3326265.511113365 4311814.414531822 3255357.013350819 1.0765851792537389 0.7432356571565838 0.7563265196588665 0.6904936608205651 0.71967570628118 1.0350994609472681 1.0429497608738536 1.0217820956262977 1.3245288909475297 1.0 21.63438434102429 2.6414237964726333 4.712345221328219 1.082889936850635 0.7865507496335608 0.5468949765981364 0.13116308518826997 0.1768508550916071 6.505500300282112 0.0432880660346651 0.040747656065068 437.9492596148486 -2.6414237964726333 -0.2963391872170743 TSRPENAIIYNNNEDFQVGQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSRPENAIIYNNNEDFQVGQAK 22 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 205.43 9.560099999999999e-23 1319000000.0 556524.0 405050.0 538303.0 391144.0 226588.0 446266.0 535464.0 400134.0 859683.0 479286.0 False True 553527.7366196286 418531.8443921048 614091.3833864469 440662.79029510205 255442.6387077035 415416.68181716814 509561.5606488768 429994.0309192821 647825.6438120137 448697.5571426109 1.2336321600335773 0.9327704992587725 1.368608706713481 0.9820931344073373 0.5692980374896836 0.9258278214452926 1.1356459435479416 0.9583159615522842 1.443791332267301 1.0 18.775383803965145 TSS(ph)DDES(ph)EEDEDDLLQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSDDESEEDEDDLLQR 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 T(0.06)S(0.098)S(0.841)DDES(1)EEDEDDLLQR;TSS(0.999)DDES(1)EEDEDDLLQR 390.97 9.226299999999993e-122 240220000.0 334110.0 284850.0 273150.0 246420.0 239070.0 359150.0 300960.0 298770.0 388640.0 315450.0 True False 332311.1888831107 294331.06005453895 311607.1457376384 277616.7467339885 269514.14742109325 334322.80584816186 286401.41502115224 321065.7345233198 292864.8795091923 295317.7109296677 1.1252667096632525 0.9966590189527653 1.055159017577006 0.94006128470942 0.9126243955117214 1.1320784141110438 0.9698077847060147 1.087187536137256 0.9916942623835401 1.0 18.171908355474184 2.7390252573880938 24.99999991569162 1.0397213569763188 1.0045105939083825 0.042778638312998885 0.07025731278720788 134.1620483394479 7218860.012195761 0.021682110824639098 0.021686359662368065 548.3088521479613 -2.7390252573880938 -0.03521076306793636 TSS(ph)DPVLLK ddPTM_BT-474_Trastuzumab_2h_R1 6 TSSDPVLLK 9 0 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 TS(0.002)S(0.998)DPVLLK;T(0.032)S(0.032)S(0.936)DPVLLK;TS(0.014)S(0.985)DPVLLK;TSS(1)DPVLLK;TSS(1)DPVLLK;TSS(1)DPVLLK 251.56 9.3463e-13 2434870000.0 7645550.0 6336610.0 5611680.0 5555750.0 5430830.0 7457220.0 7337750.0 6933870.0 9831640.0 7027910.0 True False 7604387.208300462 6547520.233288367 6401755.766403044 6259107.380356123 6122414.009448679 6941719.933807688 6982794.999572896 7451310.588878433 7408764.059226431 6579382.766903542 1.155790364797292 0.9951572153887362 0.9730024826349942 0.9513213628247151 0.9305453454154444 1.0550716046992767 1.0613146015305037 1.1325242584093107 1.126057613868424 1.0 22.649520815762596 2.3619453712102363 2.7505566773301298 1.0966241707416455 0.9966330641944289 0.21630492083692 0.06739793952211327 0.33605216959675566 5.182226194650436 0.026685117248402102 0.02105477227810595 230.11523431474825 -2.3619453712102363 -0.09999110654721666 TSS(ph)EASMDAAYLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSEASMDAAYLDK 14 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 TS(0.001)S(0.999)EASMDAAYLDK;TS(0.025)S(0.975)EASMDAAYLDK 313.31 8.9936e-56 285780000.0 818740.0 557990.0 507950.0 492620.0 469470.0 742710.0 718730.0 619840.0 1087450.0 779580.0 True False 814331.9948105663 576562.3598379222 579464.9448194528 554985.6414905334 529254.2217333026 691368.2058512832 683962.2840847705 666095.6082837437 819462.5185834495 729826.5369679834 1.1157884148658876 0.7899991719035222 0.793976260752044 0.7604349984260437 0.7251781004456959 0.9473048331779318 0.9371573236104117 0.9126766081307408 1.1228182000449765 1.0 19.477194083643766 1.7795527886557048 1.1834293691629452 1.0427281754136075 0.8368418271410684 0.30503635216885117 0.11254651801196916 0.5575022183637593 1.4551372589330072 0.09330284554900187 0.037408460723686206 60.19394244138603 -1.7795527886557048 -0.20588634827253915 TSS(ph)EDNLYLAVLR ddPTM_BT-474_Trastuzumab_2h_R1 8 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 TS(0.003)S(0.997)EDNLYLAVLR;T(0.001)S(0.032)S(0.967)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TS(0.002)S(0.997)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TS(0.001)S(0.999)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TS(0.001)S(0.999)EDNLYLAVLR 392.51 3.211e-108 14625440000.0 5845100.0 5642470.0 5104880.0 5005620.0 4530040.0 5833640.0 6124040.0 5576760.0 7248560.0 5717910.0 True False 5813630.631051663 5830276.203004854 5823602.731587606 5639330.9787622215 5106913.74234931 5430374.197711465 5827796.789095347 5992926.149413492 5462249.513727753 5352988.088450966 1.0860533472126586 1.0891629323038534 1.087916250766929 1.053492159067015 0.954030470078467 1.0144566189914486 1.0886997491492232 1.1195478208410714 1.0204112961716687 1.0 22.351913011674103 1.1672009859283037 0.005681476697672543 4.243028332435397e-08 2.0939696985698317 0.12080621433588079 0.046362190687445654 12415.413487618041 56.52815049605383 10467.201791217256 10361.75690166855 14.696062352521535 -1.1672009859283037 2.0939696561395484 TSS(ph)FAEPGGGGGGGGGGPGGSASGPGGTGGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK 32 0 P49840 P49840 GSK3A Glycogen synthase kinase-3 alpha 1 T(0.167)S(0.167)S(0.667)FAEPGGGGGGGGGGPGGSASGPGGTGGGK 297.08 9.547699999999994e-90 467820000.0 861080.0 672570.0 691240.0 597430.0 692260.0 945170.0 809820.0 863810.0 1224700.0 852940.0 True False 856444.0409549818 694956.0858728497 788560.5836342125 673064.5767441217 780415.2076535149 879832.62259086 770645.912787178 928271.8885383031 922889.0951392252 798504.6389613268 1.0725598815168076 0.8703219141930468 0.9875466530287799 0.8429062824476836 0.9773458657280412 1.1018503583589976 0.9651113784255697 1.1625128311662334 1.1557717389590803 1.0 19.606941263522362 2.8488858870601086 4.33589778777885 1.0837687536187397 0.938192546503039 0.3756750829413473 0.0820555983851839 0.22440145640188072 7.0435789367555115 0.0249062568872345 0.02653063220954222 706.1319903474937 -2.8488858870601086 -0.14557620711570074 TSS(ph)FTEQLDEGTPNR ddPTM_BT-474_Trastuzumab_2h_R1 6 TSSFTEQLDEGTPNR 15 0 Q13439-5;Q13439-3;Q13439-4;Q13439;E7EVX2;Q86W71;C9JHJ5;C9J0Y3 Q13439-5 GOLGA4 Golgin subfamily A member 4 1 TSS(0.793)FT(0.207)EQLDEGTPNR;TSS(0.655)FT(0.344)EQLDEGTPNR;TS(0.002)S(0.707)FT(0.291)EQLDEGTPNR;TSS(0.737)FT(0.263)EQLDEGTPNR;TSS(0.862)FT(0.138)EQLDEGTPNR;TS(0.133)S(0.829)FT(0.038)EQLDEGTPNR 379.24 4.2384999999999976e-98 7609490000.0 4500210.0 4157180.0 3804460.0 3821000.0 3717090.0 4672070.0 4268450.0 4050120.0 5217380.0 4264590.0 True False 4475981.369380338 4295549.223231626 4340094.89904088 4304738.208224047 4190439.378581468 4349100.797769788 4061968.7664375193 4352360.520492641 3931626.608310189 3992420.2151008067 1.1211198040853827 1.0759261279622503 1.0870836898944252 1.0782277356331227 1.049598777887077 1.0893394391000937 1.017420148078014 1.09015591696245 0.9847727434700702 1.0 21.928832146296052 7.999999927751562 0.06985315251681522 0.9159473208339142 1.4072596248650255 0.5617521971616953 0.02808762060437665 185.20988983579315 0.9547539466071953 1.173870146780119 8.951513992642493 99999983.36418366 -7.999999927751562 0.49131230403111137 TSS(ph)GTSLSAMHSSGSSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSSGTSLSAMHSSGSSGK 18 0 Q12888;Q12888-2;A6NNK5;Q12888-3;M0R142 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.117)S(0.117)S(0.71)GT(0.025)S(0.025)LS(0.005)AMHSSGSSGK;T(0.028)S(0.128)S(0.811)GT(0.015)S(0.015)LS(0.003)AMHSSGSSGK;T(0.007)S(0.031)S(0.902)GT(0.023)S(0.031)LS(0.006)AMHSSGSSGK;T(0.064)S(0.064)S(0.453)GT(0.091)S(0.318)LS(0.009)AMHSSGSSGK 182.22 4.4778e-14 2082960000.0 942300.0 1582690.0 1849430.0 2032910.0 2129790.0 2315070.0 2344620.0 2279480.0 1937990.0 2402330.0 True False 937226.7614993727 1635368.879893692 2109813.6684662653 2290276.1975610442 2401006.1322456575 2155034.6599885942 2231201.7732818085 2449586.3725649035 1460398.332235538 2249011.2426618095 0.4167283576537933 0.7271501577547281 0.9381072128253136 1.0183480429606016 1.067582983446519 0.9582142672786332 0.9920812003772277 1.089183693748771 0.6493512813689133 1.0 21.100859442397173 4.5895547471861535 1.7970834868376044 0.9840043757618747 0.3230288743551158 0.6874101922941164 0.11531536097970398 0.3301896776043588 1.3704659824905476 0.02915605411110785 0.33503133876796953 38864.64876640077 -4.5895547471861535 -0.6609755014067589 TSS(ph)IADEGTYTLDSILR ddPTM_BT-474_Trastuzumab_2h_R1 5 TSSIADEGTYTLDSILR 17 0 A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3;E7ERV5 A0A087WY00 MYO5A Unconventional myosin-Va 1 T(0.003)S(0.02)S(0.977)IADEGTYTLDSILR;TSS(1)IADEGTYTLDSILR;TS(0.002)S(0.998)IADEGTYTLDSILR;T(0.012)S(0.012)S(0.975)IADEGTYTLDSILR;T(0.02)S(0.02)S(0.96)IADEGTYTLDSILR 373.1 7.5228e-105 466629000.0 692798.0 602270.0 595783.0 604208.0 625007.0 755617.0 665170.0 615070.0 833816.0 721791.0 True False 689068.0525450947 622316.1928700971 679664.0677613312 680700.6708491581 704597.9367432764 703382.9753210924 632993.1859038403 660969.6466621758 628333.2193619717 675725.6804236344 1.0197452494525525 0.9209598079503903 1.0058283819185734 1.0073624409574085 1.0427277771973105 1.0409297673578408 0.9367605882715547 0.9781626861477167 0.9298643481598172 1.0 19.366078159090108 -0.4065705398264235 5.446221006536754 0.9999999942195219 0.9865383035491688 0.008359895109205429 0.04252597983065782 4060776.8134654565 745613.6425981134 0.041700219984342146 0.01042505498180754 0.39212944994461707 0.4065705398264235 -0.013461690670353077 TSS(ph)KES(ph)SPIPS(ph)PTSDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSKESSPIPSPTSDRK 17 2 Q01082;A0A087WUZ3 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 3 T(0.31)S(0.354)S(0.399)KES(0.531)S(0.405)PIPS(0.972)PT(0.015)S(0.013)DRK 101.29 0.00074293 537940000.0 733770.0 477160.0 366570.0 332640.0 379440.0 620770.0 600740.0 552650.0 1094200.0 582710.0 True False 729819.4638495112 493041.9821506883 418179.86971644225 374752.1898936528 427759.43488291936 577857.6310353986 571679.9111503417 593891.5492998379 824549.071528815 545520.9489168698 1.33783948223907 0.9038002722528286 0.7665697725206284 0.6869620509308069 0.7841301708618788 1.0592767008906498 1.047952259735232 1.0886686395435552 1.511489289578988 1.0 19.057275073952088 1.9890887516294282 1.4477254809748192 1.228301634700061 0.8886656233743973 0.27264674918762755 0.2079071850278919 0.5261542052477705 2.0533566597250252 0.1455836969381446 0.06861792364372409 97.51889051844725 -1.9890887516294282 -0.3396360113256638 TSS(ph)LDTITGPYLTGQWPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSSLDTITGPYLTGQWPR 18 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 TS(0.026)S(0.974)LDTITGPYLTGQWPR;TS(0.002)S(0.998)LDTITGPYLTGQWPR;T(0.023)S(0.023)S(0.953)LDTITGPYLTGQWPR 294.29 3.0257e-49 816840000.0 541013.0 513457.0 464490.0 450409.0 445386.0 616377.0 565534.0 509184.0 661014.0 593589.0 True False 538100.2461201956 530547.1058536894 529886.1545805447 507430.73321852443 502103.2670903538 573768.3087853891 538176.959870322 547181.8956639625 498115.9568338039 555705.6418228893 0.968318846566066 0.9547268660316781 0.95353747506027 0.9131286332706502 0.9035417841778557 1.0325040193999984 0.9684568940220443 0.984661400717534 0.8963665641396529 1.0 19.083961361816424 2.76198081816784 24.999873915227212 0.9755725410144742 0.9389529936448794 0.20872247577192704 0.036727987410161936 1361.6383087609593 1453477.2492656193 0.011249233703542595 0.011925372162690576 578.070514738525 -2.76198081816784 -0.03661954736959483 TSS(ph)LDTLAAPYLAGHWPR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 T(0.022)S(0.022)S(0.955)LDTLAAPYLAGHWPR;T(0.017)S(0.017)S(0.966)LDTLAAPYLAGHWPR;T(0.021)S(0.021)S(0.957)LDTLAAPYLAGHWPR 200.55 1.574e-15 125344000.0 176074.0 170981.0 173736.0 161782.0 159747.0 202063.0 190051.0 188279.0 242357.0 192073.0 True False 175126.03714766042 176671.99922480286 198196.51865961702 182263.58461211767 180089.83355534906 188094.86041513892 180857.50706467612 202329.3350413898 182631.36476741836 179814.7366980313 0.9739248315434526 0.9825223586734932 1.102226226276742 1.0136187275807031 1.0015298904993517 1.0460480818711355 1.0057991374110564 1.125209973091182 1.0156640558004826 1.0 17.456151736056366 TSS(ph)LTQFPPSQSEER ddPTM_BT-474_Trastuzumab_2h_R1 9 TSSLTQFPPSQSEER 15 0 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3;B7Z7F3 Q9H6Z4 RANBP3 Ran-binding protein 3 1 TS(0.015)S(0.984)LT(0.001)QFPPSQSEER;T(0.013)S(0.035)S(0.947)LT(0.005)QFPPSQSEER;TSS(1)LTQFPPSQSEER;T(0.001)S(0.026)S(0.973)LTQFPPSQSEER;TSS(1)LTQFPPSQSEER;TSS(1)LTQFPPSQSEER;TSS(1)LTQFPPSQSEER;TS(0.004)S(0.996)LTQFPPSQSEER;TS(0.032)S(0.967)LTQFPPSQSEER 339.56 7.400199999999998e-69 1184083000.0 2338586.0 2118028.0 2051663.0 2073321.0 2024455.0 2555797.0 2354139.0 2229324.0 2889848.0 2355460.0 True False 2325995.312817332 2188525.2816050355 2340519.317025518 2335803.226017606 2282257.344365119 2379120.769088998 2240260.3028856954 2395687.477157895 2177683.682379272 2205132.5261892388 1.0548097609520821 0.992468822446285 1.0613962150702323 1.0592575268272804 1.0349751397069826 1.078901490424448 1.0159300070536632 1.0864142851758485 0.9875522928966985 1.0 21.07243393219567 5.826437879123868 13.751083617573 1.041632803326272 1.0522339599015744 0.0 0.034712013550612444 0.0 0.0 0.007030421895424015 0.0 670560.3638242044 -5.826437879123868 0.010601156575302362 TSS(ph)PHKEESPK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSSPHKEESPK 11 1 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 T(0.053)S(0.386)S(0.561)PHKEESPK;T(0.003)S(0.083)S(0.914)PHKEESPK;TS(0.007)S(0.993)PHKEESPK 216.88 7.1186e-12 1396480000.0 1790230.0 1143310.0 1065960.0 940180.0 997410.0 1335520.0 1503480.0 1361710.0 2247360.0 1293320.0 True False 1780591.6005932523 1181364.3822045103 1216037.9025095839 1059206.691601172 1124424.2513877635 1243198.645875921 1430750.9285486506 1463327.7148232725 1693528.241081151 1210779.21033304 1.470616265457249 0.975705869511553 1.0043432296587727 0.8748140722616339 0.9286781948283342 1.0267756790554436 1.1816778123858804 1.2085834496784644 1.3987093820477186 1.0 20.207504378040525 2.171386731089984 3.9226068973777797 1.2188018937195622 1.027852936216041 0.14120556262678863 0.1769455320969839 0.369710825862779 11.312205270407823 0.06940201023437177 0.050388314068620495 148.38388276538208 -2.171386731089984 -0.19094895750352125 TSS(ph)PIPAQHAPRPYASSLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPIPAQHAPRPYASSLEK 20 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 T(0.152)S(0.152)S(0.696)PIPAQHAPRPYASSLEK 108.77 0.00012509 309150000.0 210260.0 196440.0 161260.0 156390.0 166580.0 240830.0 214190.0 228940.0 326870.0 241410.0 True False 209127.98352208207 202978.38664951242 183964.00630295303 176188.95796497216 187792.97560298519 224181.98895284062 203828.81141474127 246024.66533376445 246317.26833359874 226003.00711850054 0.9253327475082207 0.8981225039323677 0.813989197083979 0.7795867860846236 0.8309313136905271 0.9919425047087754 0.9018853953030251 1.08859022926525 1.0898849155774586 1.0 17.785982443210397 2.1600466083402345 1.3529717225318696 1.0649532964666908 0.8506943542599199 0.6555687091486311 0.06074604005323053 0.2592390162141712 0.9075974365638493 0.0403130149347865 0.0217441377014148 144.5594903188542 -2.1600466083402345 -0.21425894220677089 TSS(ph)PLFNK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSPLFNK 8 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 TS(0.002)S(0.998)PLFNK;T(0.007)S(0.035)S(0.959)PLFNK 157.49 0.00039451 726250000.0 2619700.0 2421200.0 2070900.0 2128620.0 2128960.0 2755400.0 2698300.0 2640100.0 3667700.0 2732200.0 True False 2605595.8262760304 2501788.178353691 2362464.7194145177 2398103.073747672 2400070.436665455 2564925.6835139245 2567772.920493001 2837117.668156157 2763844.4796620673 2557828.6568458946 1.018674890244227 0.978090604958149 0.9236211788821368 0.937554228790609 0.9383233823117088 1.0027746294299404 1.0038877755241702 1.109189882818288 1.0805432460320523 1.0 21.28648819390413 2.1276096750111133 2.1491883741610125 1.0725224504755921 0.9594096565885445 0.5515807903617775 0.03834714119157627 0.20585984058758747 1.8657806722648624 0.019573027617989895 0.011757906965576145 134.15586845556086 -2.1276096750111133 -0.11311279388704765 TSS(ph)PPRK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSPPRK 7 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.028)S(0.063)S(0.909)PPRK 64.485 0.077507 551060000.0 1278400.0 1116000.0 954420.0 934270.0 977660.0 849010.0 1167500.0 1172600.0 1693000.0 1304400.0 True False 1271517.236443593 1153145.3853637534 1088794.040032645 1052548.486207138 1102159.2059551827 790319.9370545667 1111023.5647168893 1260105.3663421494 1275782.8350377292 1221152.0752469767 1.041243971342742 0.9443094015383228 0.8916121604366414 0.8619307189845796 0.9025568791112869 0.6471920681089006 0.9098158920887769 1.031898804321562 1.0447370650209176 1.0 20.219811445769714 1.7845475656742245 4.761908393406572 1.0283841584706301 0.8773740706552587 0.32182129758666445 0.09324835638812817 0.24195130796312028 10.729770036941568 0.04851638141295284 0.02623044500432595 60.890223152504284 -1.7845475656742245 -0.1510100878153714 TSS(ph)SET(ph)EEKKPEKPLILQSLGPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSSETEEKKPEKPLILQSLGPK 23 3 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 2 T(0.375)S(0.36)S(0.425)S(0.341)ET(0.499)EEKKPEKPLILQSLGPK 84.365 0.014103999999999997 1158500000.0 511580.0 214770.0 191770.0 194860.0 200030.0 438790.0 427390.0 328880.0 787120.0 348660.0 True False 508825.71012188087 221918.4896187933 218769.54910527868 219529.2560205541 225502.6348293019 408457.4801005567 406715.5129116496 353422.695618801 593144.8228676294 326408.2202971557 1.5588630386166615 0.6798802107886959 0.6702329644336626 0.6725604392582359 0.6908607712882007 1.2513700780228663 1.2460333031483817 1.0827628522867832 1.8171871478225694 1.0 18.31631786517945 2.7252361530466627 22.63716684645888 1.264889978734477 0.8244370131589207 0.3013619436695275 0.32153908141648024 272.99511267281287 463794.1658962611 0.10179187334788554 0.09663738842650943 531.1731977751413 -2.7252361530466627 -0.44045296557555624 TSS(ph)TCS(ph)NESLSVGGTSVTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 TS(0.003)S(0.989)T(0.008)CS(1)NESLSVGGTSVTPR 201.76 3.5117e-22 0.0 270310.0 228880.0 218030.0 206490.0 219020.0 247800.0 251650.0 234580.0 315750.0 270170.0 True False 268854.6809942642 236498.13243911802 248726.72884926715 232631.61282810324 246910.89876675376 230670.16925845595 239476.72810364483 252085.5507731038 237937.64333323282 252927.51929582612 1.0629712486121747 0.9350431028523545 0.9833913270558524 0.9197560371278357 0.9762120763061956 0.912001074065263 0.9468195820303399 0.9966711074972529 0.9407344997320713 1.0 17.948364489657383 -0.7949787862638807 5.825717626403822 1.0000000035561252 0.9627530812508737 0.0621502250237107 0.04210967178762485 1.4083447249103092e-09 3.8679382122791263e-10 0.037804962463622006 0.008910714310163334 0.16033237054205687 0.7949787862638807 -0.037246922305251506 TSS(ph)TDEVLSLEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSTDEVLSLEEK 13 0 K7ENH8;A0A0A0MRB7;P15923-2;K7EMM4 K7ENH8 TCF3 Transcription factor E2-alpha 1 TSS(1)TDEVLSLEEK;TSS(0.998)T(0.002)DEVLSLEEK 357.54 3.0293999999999996e-76 509030000.0 1697390.0 1233660.0 1072400.0 1029570.0 1041380.0 1665930.0 1504100.0 1383200.0 2281580.0 1578250.0 True False 1688251.4408377586 1274721.6273367803 1223384.5985321014 1159913.456435809 1173993.570257155 1550768.1802774 1431340.936780018 1486421.4077472806 1719315.1806056593 1477524.7337921937 1.1426214412700333 0.8627413119948917 0.827996019662006 0.7850382669796612 0.794567795318052 1.0495717227671855 0.9687424542168976 1.0060213367340747 1.1636456170807306 1.0 20.494750850671597 2.724594078904084 24.4066278525061 1.0295617008872833 0.8730372275662376 0.3456825807484688 0.10593279238698225 681.9364421685652 1191686.7264232365 0.0349755136869506 0.03313700013440152 530.3884754204232 -2.724594078904084 -0.1565244733210457 TSS(ph)TLDSEGTFNSYR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSSTLDSEGTFNSYR 15 0 Q92609;Q92609-2;C9J397;C9JWX0;C9JW04;C9JDR8;C9JNM0;C9JED7;F2Z3C3;C9K0P2 Q92609 TBC1D5 TBC1 domain family member 5 1 TSS(0.997)T(0.003)LDSEGTFNSYR;TSS(0.999)T(0.001)LDSEGTFNSYR;TSS(0.948)T(0.052)LDSEGTFNSYR 400.4 1.472399999999999e-115 997380000.0 1783140.0 1451720.0 1368260.0 1332080.0 1561830.0 1907040.0 1622670.0 1650440.0 2280140.0 1796100.0 True False 1773539.7723654795 1500039.6226167283 1560899.1148708798 1500721.1914187607 1760719.7928083243 1775210.8134892904 1544175.252898632 1773604.2135645035 1718230.049310648 1681471.3602814244 1.054754671568504 0.8920994184317655 0.9282936074567665 0.8925047591459352 1.0471304087591693 1.0557484685270981 0.918347638487394 1.0547929958602797 1.0218610259428216 1.0 20.681292775645204 3.2322201997954974 24.999961769275224 1.0165406392863354 0.9373821693444405 0.2933508000480063 0.05639452453114702 178.4706760928272 703701.5433689337 0.015795499375762766 0.019319258771243138 1706.9476411878627 -3.2322201997954974 -0.0791584699418949 TSS(ph)VLGMSVESAPAVEEEKGEELEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.001)S(0.042)S(0.957)VLGMSVESAPAVEEEKGEELEQK 225.23 1.1155e-34 50338000.0 76160.0 35319.0 33273.0 30395.0 37277.0 45314.0 51264.0 48083.0 83587.0 46512.0 True False 75749.96302217149 36494.571564213635 37957.549185899494 34243.003883530444 42024.00499191064 42181.54983768233 48784.16447250245 51671.197620526735 62988.10385841615 43543.56433907336 1.7396362510038723 0.8381163122070283 0.8717143339558605 0.7864079205110649 0.9651025502797629 0.9687206474236919 1.120353035241226 1.1866552131140107 1.4465536943169908 1.0 15.41017188638276 1.9101197286808094 2.4155824636632497 1.2372402976269423 0.9995833851448956 0.0748467647731379 0.2722282859806543 0.6344617520061918 6.74270210564911 0.15145275841001637 0.07690418226991344 81.30546326229658 -1.9101197286808094 -0.23765691248204668 TSS(ph)VPEYVYNLHLVENDFVGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 TSSVPEYVYNLHLVENDFVGGR 22 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 T(0.015)S(0.098)S(0.887)VPEYVYNLHLVENDFVGGR;T(0.019)S(0.09)S(0.892)VPEYVYNLHLVENDFVGGR;T(0.02)S(0.02)S(0.96)VPEYVYNLHLVENDFVGGR;T(0.076)S(0.076)S(0.847)VPEYVYNLHLVENDFVGGR;T(0.023)S(0.023)S(0.955)VPEYVYNLHLVENDFVGGR 368.34 3.615699999999999e-113 1730260000.0 426604.0 248229.0 233588.0 270742.0 224669.0 284243.0 248408.0 252196.0 370620.0 327572.0 True False 424307.2114641603 256491.15220740097 266475.16001670714 305017.9094401974 253279.26543250727 264593.9504460505 236391.5560292872 271016.1461453393 279285.6670535634 306666.07451150124 1.3836131438407513 0.8363858069920985 0.8689424170612431 0.9946255383027638 0.8259122429370916 0.8628080261813478 0.7708435189834523 0.8837500091167569 0.9107158902348328 1.0 18.226309049123962 4.74126959182926 24.990407862080986 0.8758787848777497 1.3836133262132377 0.8295370716049258 0.06788974388535327 91.07108636540066 840089.0377113577 0.01563228537332773 0.1076033472993629 55114.97209057587 -4.74126959182926 0.507734541335488 TSS(ph)VSSISQVSPER ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSVSSISQVSPER 14 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 TS(0.001)S(0.985)VS(0.013)S(0.001)ISQVSPER;T(0.002)S(0.001)S(0.989)VS(0.007)SISQVSPER 344.32 1.2474e-69 560230000.0 603600.0 574460.0 565260.0 580150.0 585600.0 686040.0 617690.0 654650.0 729280.0 641840.0 True False 600350.2846662644 593580.553831597 644843.6946720026 653596.9305158799 660172.6888768643 638615.6695644519 587809.974895053 703503.3072453422 549558.7158513374 600877.2216931294 0.9991230537490169 0.9878566409274558 1.0731704770818007 1.0877379053814002 1.098681502714738 1.0628055890768908 0.978253050163466 1.1707937692546189 0.9145940235557797 1.0 19.196710707053754 4.24249444664734 24.916735340494203 1.0600566000663596 0.993489820868677 0.07382575528334634 0.06798664203707962 178.80907380550454 1132519.9501249206 0.015712567810923454 0.03985874034159795 17478.109128999913 -4.24249444664734 -0.06656677919768261 TSS(ph)VVTLEVAK ddPTM_BT-474_Trastuzumab_2h_R1 5 TSSVVTLEVAK 11 0 P55196-5;P55196;J3KN01;P55196-3;A8MQ02;Q5TIG5;P55196-6;P55196-2;P55196-1 P55196-5;P55196-1 MLLT4 Afadin 1 TSS(1)VVTLEVAK;TSS(1)VVTLEVAK;TS(0.001)S(0.999)VVTLEVAK;TS(0.001)S(0.999)VVTLEVAK;TS(0.002)S(0.998)VVTLEVAK 244.71 7.133899999999998e-16 2167440000.0 3427570.0 2694888.0 2610339.0 2380148.0 2064483.0 3522330.0 3519230.0 3032630.0 5117340.0 3471240.0 True False 3409116.3439588253 2784585.717985804 2977852.041726677 2681474.4927579253 2327382.672900574 3278839.6177729513 3348991.4001358594 3258940.249983108 3856240.1258428623 3249702.4913219176 1.0490549067376507 0.8568740447538898 0.9163460500395971 0.8251446093661183 0.7161833057381934 1.0089660904433073 1.0305532303584974 1.0028426474995356 1.1866440500755553 1.0 21.6318762154834 2.502851191549467 22.635897730812083 1.0451264576987307 0.8707160716872315 0.47528640908283937 0.09170577754357068 203.93548250385166 179411.9991302727 0.029855060603638232 0.02801271039525935 318.31066620676745 -2.502851191549467 -0.17441038601149916 TSSAFVGKT(ph)PEAS(ph)PEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSAFVGKTPEASPEPK 17 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 2 TSS(0.001)AFVGKT(0.999)PEAS(1)PEPK 117.31 0.0005122000000000001 315910000.0 950390.0 553510.0 453970.0 435500.0 469150.0 777180.0 806880.0 730910.0 1263200.0 675480.0 True False 945273.2058382559 571933.2457461398 517885.03002202295 490634.25534717843 528893.47163009 723455.3758849341 767848.1318190699 785454.2156857768 951901.2860127928 632370.2880924775 1.4948096449781647 0.9044277641053569 0.8189585117672191 0.77586544558752 0.8363667325760646 1.1440375828965834 1.2142381548874734 1.2420795702705634 1.505290972610635 1.0 19.27041005872286 2.5063101043443154 3.5209964592700165 1.2541617720532068 0.944654380830146 0.2518633506244601 0.2216534493830169 0.3073840164173957 7.972749654031965 0.07859472333977253 0.06951154452352538 320.8559551875346 -2.5063101043443154 -0.3095073912230608 TSSAQVEGGVHSLHSYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSSAQVEGGVHSLHSYEK 18 0 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 271.2 3.4501999999999995e-39 1085100000.0 446470.0 543240.0 575460.0 551830.0 581350.0 718040.0 725480.0 310370.0 818850.0 595900.0 False True 444066.2551274807 561321.4150044855 656479.7660120131 621691.6214195953 655381.4765685886 668403.584884349 690385.7607972657 333531.38542692596 617055.3895278467 557869.151824343 0.7960043205029276 1.0061883027029779 1.1767629808265858 1.1144040128165182 1.1747942585198714 1.1981368439149869 1.2375406644005444 0.597866693894459 1.1060934047167743 1.0 19.089567252134884 1.7600855763621877 24.99999999690248 0.8627552633135543 1.1069919214923767 0.21326129198110044 0.17028233126948586 13.068423663277514 15190.782010219962 0.07804133974112473 0.04327905954243789 57.55533371397308 -1.7600855763621877 0.24423665817882234 TSSKDDKGS(ph)TSSTSGSSGSSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSKDDKGSTSSTSGSSGSSTK 22 2 Q9NWH9;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 T(0.001)SSKDDKGS(0.823)T(0.154)S(0.021)STSGSSGSSTK;T(0.002)S(0.002)S(0.002)KDDKGS(0.883)T(0.047)S(0.047)S(0.012)T(0.003)SGSSGSSTK 176.97 3.4167e-17 361390000.0 368400.0 278040.0 253640.0 227068.0 225106.0 373840.0 424330.0 367290.0 683960.0 345190.0 True False 366416.57533308776 287294.3933212705 289350.3073215981 255814.78551819373 253771.91479220512 347997.320724702 403803.53680198477 394699.0448608297 515407.2225944503 323159.67866797233 1.1338561074309006 0.8890168306438028 0.8953787443850277 0.7916049012445902 0.7852833492044066 1.0768587286604183 1.2495480205526175 1.2213746668140486 1.5948995391965377 1.0 18.30188767557512 2.40598064284543 2.8291006214011123 1.2811246218083885 0.89294554684709 0.5296424098520174 0.16245892903882508 0.19783475586192326 3.233102063299968 0.06045122087854641 0.04927312875732114 254.67167390815078 -2.40598064284543 -0.38817907496129844 TSSTCS(ph)NESLSVGGTSVTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSSTCSNESLSVGGTSVTPR 20 0 O60343-2;O60343-3;O60343;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 TSST(0.001)CS(0.998)NES(0.001)LSVGGTSVTPR;TSSTCS(1)NESLSVGGTSVTPR 292.66 1.7346e-54 465140000.0 207880.0 258593.0 257445.0 248786.0 257690.0 294483.0 285308.0 242171.0 293703.0 285846.0 True False 206760.7971776392 267200.1116822307 293691.01824794593 280282.2820913968 290505.29405170603 274126.08334841765 271506.5620575986 260243.0297394207 221323.83106856854 267603.0635549269 0.7726398735162481 0.9984942180132648 1.097487503866578 1.0473806927620148 1.0855828412146646 1.0243757291371662 1.0145868976640864 0.9724964515811848 0.8270601544258506 1.0 18.029735106672543 -0.2508337110870524 6.520877784077886 0.9999999089736687 0.9924098763685819 0.0 0.10016530550461156 0.0 0.0 0.09662432819623912 0.022774572574478617 0.5612628392773006 0.2508337110870524 -0.007590032605086838 TSSVSNPQDSVGS(ph)PCSR ddPTM_BT-474_Trastuzumab_2h_R1 6 TSSVSNPQDSVGSPCSR 17 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 F5GZ78;P49023-3 PXN Paxillin 1 TSSVSNPQDSVGS(0.999)PCS(0.001)R;TSSVSNPQDSVGS(0.998)PCS(0.002)R;TSSVSNPQDSVGS(0.999)PCS(0.001)R;TSSVSNPQDSVGS(1)PCSR;TSSVSNPQDSVGS(1)PCSR;TSSVSNPQDS(0.002)VGS(0.984)PCS(0.014)R 410.6 1.8939999999999992e-140 4220560000.0 1978475.0 2119399.0 1964381.0 2068648.0 2089631.0 2278514.0 2113000.0 1785782.0 2274517.0 2116498.0 True False 1967823.1104292364 2189941.9145112517 2240948.7700942624 2330538.6246967413 2355733.1216367 2121005.6902250294 2010786.117556134 1919046.1208572572 1713992.76231631 1981421.2856148977 0.9931371610447591 1.1052379069560885 1.1309804665789815 1.176195411655478 1.1889107777025023 1.0704466059911202 1.014820085034124 0.9685199885503988 0.8650319721302498 1.0 20.918104224942624 2.0675282479094474 1.8047055766428446 0.9376515524464467 1.1214159131680312 0.6217069040898444 0.05933105559169078 0.233839688201213 1.4449742583277445 0.03584211960202732 0.01916984877289828 116.82297128068257 -2.0675282479094474 0.18376436072158453 TSTLPPLPLPPLLPGDDDMDS(ph)PKETLPSKPVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSTLPPLPLPPLLPGDDDMDSPKETLPSKPVK 32 2 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 TSTLPPLPLPPLLPGDDDMDS(0.657)PKET(0.259)LPS(0.084)KPVK 67.345 0.0021958000000000004 154990000.0 203360.0 135760.0 111700.0 104360.0 113860.0 177850.0 174560.0 179080.0 285220.0 153650.0 True False 202265.13235541992 140278.68953134687 127426.38908619521 117571.9652997282 128359.39609890693 165555.64811386765 166115.8659160428 192443.8589498145 214931.35275219206 143843.92545361683 1.4061430242366495 0.9752145534750469 0.8858656261246463 0.817357875412263 0.8923518716144676 1.150939447681104 1.1548340702757562 1.3378657342876041 1.4941983269324621 1.0 17.13414477161421 2.2620984525601435 1.968832957970721 1.3007644251435486 0.9826672580333163 0.2687201155536647 0.19205848072344428 0.3836997515506417 3.0138539190207396 0.09263814895403773 0.061765046407912916 182.85146850249623 -2.2620984525601435 -0.3180971671102323 TSTS(ph)LGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TSTSLGK 7 0 Q9BW04;Q9BW04-2 Q9BW04 SARG Specifically androgen-regulated gene protein 1 TS(0.005)T(0.035)S(0.96)LGK;TST(0.03)S(0.969)LGK 88.36399999999998 0.019576 1257670000.0 5743100.0 3648600.0 3264800.0 3565800.0 3226800.0 3309200.0 4591400.0 4592300.0 7066400.0 4866200.0 True False 5712179.787718395 3770041.4453747277 3724455.4618496886 4017229.914390294 3637713.85325797 3080442.793018895 4369296.44114871 4935000.745226901 5324980.404908803 4555634.949836577 1.2538712716485998 0.827555650724378 0.8175491458075004 0.881815588523923 0.798508636735361 0.6761829749175576 0.9590971377777863 1.0832739672005398 1.1688777664461074 1.0 22.119220715588643 1.8652586498365988 3.6828278338639007 1.0921195353320239 0.8650987919482498 0.28405342736831685 0.14547383731249283 0.28409552960083106 6.344157321005005 0.07276748620411319 0.03969972676926743 73.32611064960663 -1.8652586498365988 -0.2270207433837741 TSTS(ph)PPPEK ddPTM_BT-474_Trastuzumab_2h_R1 12 TSTSPPPEK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 TST(0.002)S(0.998)PPPEK;TST(0.013)S(0.987)PPPEK;TST(0.001)S(0.999)PPPEK;TST(0.004)S(0.995)PPPEK;TST(0.019)S(0.981)PPPEK;TST(0.001)S(0.999)PPPEK;TST(0.009)S(0.991)PPPEK;TST(0.001)S(0.999)PPPEK;TST(0.001)S(0.999)PPPEK;TSTS(1)PPPEK;TST(0.002)S(0.998)PPPEK;TST(0.002)S(0.997)PPPEK 192.5 3.6369e-05 52263180000.0 22196490.0 18981330.0 17177850.0 15519500.0 17137010.0 20610740.0 20974980.0 20279450.0 24493240.0 19108610.0 True False 22076986.56410186 19613112.09459373 19596341.967451215 17484267.10874983 19319306.644483794 19185968.05626325 19960340.085195262 21792805.535960514 18457209.194600984 17889082.150095925 1.2341039288023774 1.0963733035620589 1.095435853166236 0.9773708322232774 1.0799495738455311 1.0724959444697038 1.1157833542112854 1.218218204439497 1.0317583115633473 1.0 24.092576031954927 2.132701097621479 7.084083323460144 1.122056596600331 1.0872102468482083 0.0 0.08146964863903505 0.9201090380467324 55.09864739431 0.03105067572787576 0.022891197971394803 135.73789114883414 -2.132701097621479 -0.03484634975212275 TSTTAEKTDEEEKEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSTTAEKTDEEEKEDR 16 2 Q9NUU7;I3L0H8;H3BTB3 Q9NUU7 DDX19A ATP-dependent RNA helicase DDX19A 0 58.98 0.059355999999999985 240930000.0 144730.0 95964.0 82541.0 78468.0 89503.0 120050.0 133780.0 107750.0 231620.0 121170.0 False True 143950.78976101484 99158.10372853691 94162.05534076667 88402.0407544947 100900.67652415638 111751.22606730292 127308.55031077111 115790.85214341347 174540.3545489891 113436.82686114385 1.2689952085597618 0.8741262116747562 0.8300836504888214 0.7793063610877107 0.8894878260978442 0.9851406210797464 1.1222858910414288 1.0207518611671953 1.5386568839997707 1.0 16.791529556558128 1.9208383677663885 1.405204954365916 1.2236874057632965 0.9167594241912608 0.284075323642883 0.18425517337642422 0.5097790558848488 1.8720304449190772 0.13081677029852617 0.05811299946107264 83.33709695796698 -1.9208383677663885 -0.3069279815720357 TSTTGVATTQS(ph)PTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 TSTTGVATTQSPTPR 15 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 TSTTGVATT(0.001)QS(0.994)PT(0.004)PR 240.17 8.2577e-18 171350000.0 151560.0 140350.0 135960.0 142020.0 127970.0 163980.0 166690.0 135860.0 181770.0 155460.0 True False 150744.017799899 145021.4649066335 155101.9862144949 159999.7174383614 144266.2209623847 152644.44856739958 158626.5678823626 145998.56308310124 136975.2190932119 145538.40970399772 1.0357679330596554 0.9964480524528502 1.0657117013298962 1.099364200583033 0.991258742319636 1.0488258658168275 1.089929237271344 1.0031617315321735 0.9411619885898025 1.0 17.151040426035134 1.5080170458682316 5.7271755625370275 0.9706537357893633 1.0456195087616964 0.4355196800500618 0.03533958210027987 0.12886502447056672 9.425489527351946 0.02042959879689499 0.009026592482590306 32.21195219304051 -1.5080170458682316 0.07496577297233309 TSTVDLPIENQLLWQIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSTVDLPIENQLLWQIDR 18 0 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 179.65 1.9212999999999999e-13 81404000.0 51827.0 55206.0 54490.0 50578.0 48842.0 57282.0 58838.0 59151.0 75026.0 62385.0 False True 51547.96919052105 57043.49833726826 62161.71836442951 56981.16961412086 55061.7391907852 53322.23016732397 55991.78115701271 63565.14798269193 56536.84759689349 58403.5358895144 0.8826172663250654 0.9767130956793608 1.0643485435886055 0.9756458876379622 0.9427809181784629 0.9129966080854581 0.958705330152199 1.088378417754399 0.968038094540162 1.0 15.833768095501398 1.783771768834317 24.999999999589534 1.0281140928259127 0.9620733605419117 0.20368781250807022 0.05291068650939447 126.04823555714559 69722.8144808315 0.02521692937896254 0.014068557996896854 60.78154971118018 -1.783771768834317 -0.06604073228400098 TSVDTGQVSRPENPSQPAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSVDTGQVSRPENPSQPASPR 21 1 O15018;O15018-2 O15018 PDZD2 PDZ domain-containing protein 2;Processed PDZ domain-containing protein 2 1 TSVDTGQVSRPENPS(0.001)QPAS(0.999)PR;TSVDTGQVSRPENPSQPAS(1)PR 214.61 4.1620999999999995e-25 802260000.0 613370.0 539620.0 503850.0 553340.0 516070.0 617200.0 665800.0 504580.0 628860.0 595840.0 True False 610067.6840718135 557580.925492821 574787.7004572912 623392.7872647711 581788.455513463 574534.4167325231 633592.7103970062 542234.3218053232 473885.8792922782 557812.9810757106 1.093677818137779 0.9995839903502387 1.0304308432350315 1.1175659377137361 1.0429812056211332 1.0299767775654238 1.1358514984272305 0.9720718954221094 0.8495425803437134 1.0 19.089421982692677 1.535748513698788 5.7198605314923014 0.9203229495497782 1.0603211021329126 0.5494373722013565 0.052322853645745154 0.09396814572196456 6.477979097167639 0.027992117170799666 0.012629860631475996 34.33590618670133 -1.535748513698788 0.13999815258313442 TSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR ddPTM_BT-474_Trastuzumab_2h_R1 6 TSVLGGGEDGIEPVSPPEGMTEPGHSR 27 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(0.999)PPEGMT(0.001)EPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR 197.56 1.9792e-24 3749880000.0 689516.0 821909.0 758537.0 727087.0 744772.0 867457.0 886974.0 741880.0 869170.0 833615.0 True False 685803.7224684298 849265.7442105166 865332.4162782028 819136.1396500913 839614.2995905052 807491.7393641336 844067.6790502772 797242.8527903068 654974.6997813019 780412.9770062913 0.8787702699399131 1.0882260664966752 1.1088134638632834 1.0496188092519223 1.0758589674037886 1.0346979908787755 1.0815654069313008 1.0215653458872198 0.8392667972972748 1.0 19.57387824226966 1.4032215493497804 6.99701113316148 0.920364811518473 1.049995723568899 0.33218049813191197 0.070066457070271 0.22282869639010758 16.213001825075956 0.04393813317945732 0.01629944154695084 25.30588612157948 -1.4032215493497804 0.12963091205042598 TSVLPEHKDPPPEVGR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSVLPEHKDPPPEVGR 16 1 O15327;D6RJC3;E7EQN9;E9PG59 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase 0 ;;; 118.53 0.00015933 1452090000.0 2588540.0 2498610.0 2444130.0 2389490.0 2376380.0 3016920.0 2999790.0 2705900.0 4064840.0 3044550.0 False True 2574603.5882538334 2581774.7234083572 2788242.259241204 2691999.1890000734 2678997.9070922206 2808367.421465782 2854678.6973893554 2907827.9982817923 3063114.6480654255 2850244.2124296078 0.903292278263829 0.9058082504472831 0.978246792707088 0.9444801877890165 0.939918725353217 0.9853076481021501 1.001555826318464 1.0202031059658214 1.0746849812754684 1.0 21.442654105782925 2.475656547929061 0.8433627242636467 1.0384961413502871 0.9258432355540374 0.7324183922122258 0.026130644350892497 0.3181195978845345 0.45589332208753813 0.01888631415573479 0.013635404126226281 298.9899206538089 -2.475656547929061 -0.11265290579624976 TSVPENHAQSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSVPENHAQSR 11 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ;;; 189.43 2.7124e-06 698980000.0 1010593.0 1309850.0 1184770.0 1277321.0 1267400.0 1316550.0 1320687.0 1180490.0 1425870.0 1254180.0 False True 1005152.079575437 1353447.5654289536 1351575.3177945511 1439029.7076333263 1428795.8775316572 1225539.9973253456 1256800.3242957199 1268584.1582067583 1074483.4441791181 1174137.1586424797 0.856077224178459 1.15271674647772 1.151122173287849 1.2256061372736993 1.2168900941552776 1.043779245298988 1.0704033298365363 1.080439494542083 0.9151260023329986 1.0 20.16316951826205 1.3914446583265347 3.4566769763648595 0.9586244252366182 1.111522064568137 0.2317792571772933 0.10170350585530825 0.33162132797352767 6.5984284179747545 0.08000247948555765 0.026601300678302554 24.628879751020737 -1.3914446583265347 0.1528976393315188 TSVPS(ph)PEQPQPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TSVPSPEQPQPYR 13 0 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 TSVPS(1)PEQPQPYR;TSVPS(1)PEQPQPYR 210.38 3.1874e-08 1176680000.0 643360.0 637490.0 638910.0 600670.0 572850.0 715320.0 636130.0 586450.0 773430.0 686040.0 True False 639896.2212440162 658708.4692791569 728862.9744947259 676714.7604119171 645799.0519520353 665871.6120821584 605357.9616474133 630213.8769327593 582828.5399310286 642256.339851606 0.9963252700500627 1.02561614172832 1.1348474577349137 1.0536521298774142 1.0055160406843906 1.0367692317930388 0.9425488299380305 0.9812497562552217 0.9074702790254927 1.0 19.292789700788795 2.4560837406878755 1.4702264088998125 0.9556193555813064 1.0521733513056162 0.46280079252214557 0.04312702821369988 0.3554611643543076 1.555273743424838 0.02163315082615407 0.01598013486862671 285.81415972791893 -2.4560837406878755 0.09655399572430978 TSVS(ph)PAPDK ddPTM_BT-474_Trastuzumab_2h_R1 3 TSVSPAPDK 9 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 TSVS(1)PAPDK;TSVS(1)PAPDK;TSVS(1)PAPDK 201.09 2.3123e-05 1548661000.0 2426870.0 1945980.0 1709610.0 1512150.0 1509880.0 2004330.0 2133010.0 2045470.0 2922820.0 2263750.0 True False 2413804.0015706075 2010750.7679302471 1950308.2278034906 1703588.0349557677 1702154.268240095 1865775.3847853155 2029828.1574105124 2198113.358086202 2202530.1747814366 2119275.5369061176 1.1389760130456965 0.948791571890504 0.920271193546971 0.803853961077094 0.8031774248312381 0.8803835802819292 0.9577934166945619 1.0372003639013254 1.0392844802034853 1.0 21.01513974074614 1.932867882515389 3.5319779692801325 1.0274545175844356 0.9076900190761766 0.2288878826407652 0.0888635935605998 0.3609462173585015 8.247257641533608 0.04678755286850885 0.026550021018370732 85.67771639003233 -1.932867882515389 -0.11976449850825899 TSVS(ph)PAPDKTK ddPTM_BT-474_Trastuzumab_2h_R1 4 TSVSPAPDKTK 11 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 T(0.001)S(0.005)VS(0.995)PAPDKTK;T(0.019)S(0.014)VS(0.967)PAPDKTK;TS(0.004)VS(0.996)PAPDKTK;TSVS(1)PAPDKTK 176.56 5.154299999999998e-06 1677160000.0 1637660.0 1254820.0 1148280.0 1139970.0 1040870.0 1523680.0 1693130.0 1483800.0 2546500.0 1755790.0 True False 1628843.020521131 1296585.9251452922 1309947.8429713177 1284290.0851162428 1173418.6247801597 1418351.5879569196 1611226.8335152927 1594528.6905837331 1918949.1963517882 1643733.9789925553 0.990940773469591 0.7888052091859595 0.796934211808522 0.7813247773239951 0.7138738018297511 0.8628839009741877 0.9802235970706245 0.9700649320159579 1.167432942846331 1.0 20.64854540225953 2.0350749108033415 1.6024260879228882 1.0578574858065855 0.8092640623524413 0.6167919917690408 0.08164528321091964 0.2530992511116713 1.219301685478065 0.051703404729630344 0.02594317531467205 108.41138950732905 -2.0350749108033415 -0.24859342345414415 TSYAQHQQVR ddPTM_BT-474_Trastuzumab_2h_R1 3 TSYAQHQQVR 10 0 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;H0Y9Y4;D6RB09;D6RAS7;D6R9B6 P61247 RPS3A 40S ribosomal protein S3a 0 ;; 140.07 3.9934e-05 207930000.0 220286.0 279805.0 462932.0 193522.0 78038.0 137276.0 249093.0 129767.0 560445.0 190692.0 False True 219100.00465207544 289118.1402793059 528108.8017229231 218021.86535774227 87975.67673253556 127786.43323294532 237043.41996233337 139450.87248347417 422330.83932824596 178521.8733003649 1.2273006136533051 1.6195110152852903 2.958230226692583 1.221261357654018 0.4928005465443194 0.7158026681578863 1.3278116321550433 0.7811416601530202 2.365709207059854 1.0 17.44574132498622 3.502948323177683 24.932596910535302 1.059342985148548 1.934510796357071 0.2556965518203562 0.6281678555991568 906.5364530331428 875138.0607471635 0.16507671333573673 0.2546645608683933 3183.8186557102777 -3.502948323177683 0.8751678112085228 TSYEEFTHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TSYEEFTHK 9 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 159.79 6.5783e-05 726980000.0 782380.0 784220.0 726070.0 679970.0 662290.0 855870.0 823850.0 780240.0 1117500.0 880940.0 False True 778167.7530105894 810322.2886289997 828294.3448864263 766054.1322811055 746628.7057996218 796705.7214012707 783997.2280873738 838465.4707784409 842107.0987328186 824717.6549893213 0.9435565593908202 0.9825450973757704 1.0043368659267413 0.9288683559114842 0.9053143233720266 0.966034516881522 0.9506250088674594 1.01666972412431 1.0210853297953497 1.0 19.65354076656432 1.7240235302581681 5.965381926451888 1.0140115125129079 0.9549907668956322 0.5057752686478549 0.026261356750860283 0.12713795842086764 11.512647278021971 0.014444420776682492 0.007417390744395117 52.969214205783516 -1.7240235302581681 -0.05902074561727566 TSYGWIEIVGCADR ddPTM_BT-474_Trastuzumab_2h_R1 4 TSYGWIEIVGCADR 14 0 P41250 P41250 GARS Glycine--tRNA ligase 0 ;;; 231.92 8.400100000000001e-13 677688000.0 320212.0 403199.0 357173.0 347071.0 340000.0 376150.0 392896.0 359392.0 461385.0 404592.0 False True 318488.0141708977 416619.23497605755 407459.85379663017 391010.15301400895 383296.98466211424 350147.63586185774 373890.1194715263 386211.6559955983 347682.8489922521 378770.5921713622 0.8408467308539317 1.0999249772473676 1.0757431073537211 1.032313915324 1.0119502215438738 0.9244319466687769 0.9871149640423301 1.0196453050422396 0.9179246123599651 1.0 18.53096479844401 2.9780830880998512 23.732049993266067 0.9756759121448928 1.0229011619403638 0.07076486779640123 0.07111563289368238 1012.6109770808961 1096476.0007411658 0.02118677903637769 0.022682927092514595 950.7866783112567 -2.9780830880998512 0.04722524979547105 TT(ph)PDQELAPASEPVWERPWSVEEIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPDQELAPASEPVWERPWSVEEIR 25 1 Q641Q2;Q641Q2-2;E7ESD2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 T(0.153)T(0.847)PDQELAPASEPVWERPWSVEEIR;T(0.2)T(0.8)PDQELAPASEPVWERPWSVEEIR 161.24 3.3982e-11 431910000.0 9209.4 8533.2 8882.2 9478.2 10148.5 9458.400000000001 12986.6 10117.2 9761.400000000001 9145.7 True False 9159.817613660525 8817.22240357167 10132.736554533592 10678.139148178258 11440.851320127838 8804.563070678696 12358.388544370324 10872.196838100634 7355.833766058646 8562.013595972294 1.0698204938578288 1.029807101418226 1.1834525186108313 1.2471527904605784 1.3362337249160403 1.0283285551917951 1.4433974445198154 1.2698177497890317 0.8591242800080282 1.0 13.063734411113321 4.190348341308412 5.827511063817529 1.2026619250143473 1.0496511770744732 0.0540548053867298 0.1651579878266171 0.3623952821682303 27.801576868545453 0.04022174436437103 0.09187715983968649 15500.594006128671 -4.190348341308412 -0.15301074793987413 TT(ph)PDQELVPASEPVWERPWSVEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPDQELVPASEPVWERPWSVEEIR 25 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 T(0.442)T(0.558)PDQELVPASEPVWERPWSVEEIR 194.25 3.3566000000000003e-18 205390000.0 11045.0 9685.4 8466.6 9048.6 11754.0 11066.0 8502.0 7908.5 8533.6 9447.3 True False 10985.534947214861 10007.77268405206 9658.623686993551 10194.15183222614 13250.802228583796 10301.033466562047 8090.725779205982 8498.672428549287 6430.608624381553 8844.36522575955 1.2420942223438571 1.1315422224880587 1.0920652235009973 1.1526154305043042 1.4982197015101018 1.1647001456430017 0.9147887465842586 0.9609137808778613 0.7270853769869388 1.0 13.11054288676248 2.2686463954111398 4.5811332046948845 0.9023470608665003 1.2178126687534054 0.6110540675838171 0.12286967646776684 0.14211182519356416 6.928821533293571 0.046847828821622174 0.03718645965889962 185.62924376853883 -2.2686463954111398 0.31546560788690514 TT(ph)PDQELVPASEPVWERPWSVEEIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPDQELVPASEPVWERPWSVEEIRR 26 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 T(0.461)T(0.539)PDQELVPASEPVWERPWSVEEIRR 124.12 0.0058197 211670000.0 46721.0 43697.0 39214.0 51511.0 43117.0 57362.0 52010.0 39739.0 65888.0 55640.0 True False 46469.459327191114 45151.42822960567 44734.99034580179 58032.287318458206 48607.69437551873 53396.699955623706 49494.077602505684 42704.52597055322 49650.78525396685 52089.00756419939 0.8921164272503711 0.8668129868659296 0.8588182504853098 1.1140985407897004 0.9331660680155989 1.025104958849765 0.9501827720849649 0.8198375812386164 0.9531912312357373 1.0 15.668691329676124 TT(ph)PNSGDVQVTEDAVR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPNSGDVQVTEDAVR 16 0 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 T(0.202)T(0.798)PNSGDVQVTEDAVR 149.95 1.7797e-07 0.0 91213.0 96042.0 87519.0 92273.0 95936.0 113440.0 90492.0 98843.0 108410.0 104780.0 True False 90721.91934271691 99238.69991138502 99840.9144712151 103954.7523390361 108152.88094277828 105598.1598090365 86114.55624698984 106219.16657458396 81693.80811957481 98092.85069332867 0.9248576089030609 1.0116812714683832 1.017820501346744 1.0597587041693153 1.102556202397468 1.0765122948579806 0.8778882012126754 1.0828431004279904 0.8328212254221993 1.0 16.581860371802943 -0.6721124750439619 5.309311147832315 0.9999999999131255 1.0070135099374253 0.0 0.08740431223168323 0.0 2.2440625735523918e-10 0.07995636156622367 0.018845893469205743 0.21275879647464868 0.6721124750439619 0.0070135100242998405 TT(ph)PPEAAQNGQS(ph)PMAALILVADNAGGSHASK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 T(0.466)T(0.535)PPEAAQNGQS(1)PMAALILVADNAGGSHASK;T(0.458)T(0.542)PPEAAQNGQS(1)PMAALILVADNAGGSHASK;T(0.455)T(0.545)PPEAAQNGQS(1)PMAALILVADNAGGSHASK 185.23 4.0524e-18 177631000.0 115481.0 111117.0 129158.0 121555.0 122756.0 178448.0 154325.0 160041.0 180464.0 171700.0 True False 114859.26312714523 114815.46217335504 147342.32373853895 136943.8505366852 138388.24896818367 166112.3097814084 146859.7101712497 171984.07209173133 135991.06529370855 160741.95900023426 0.7145568203942185 0.7142843280464668 0.9166388456067294 0.8519483735823179 0.8609341943380321 1.033409763166855 0.9136364337269005 1.0699388831728789 0.8460209527091204 1.0 17.29438704402338 4.556459014365348 0.5274320626604057 0.9857778932757101 0.5275832403012657 0.6028565103930603 0.07244487517844674 2.1983068906493313 0.5375226024676173 0.040841423193921485 0.6088707197906919 36012.97622968338 -4.556459014365348 -0.4581946529744444 TT(ph)PPESAPQNGPSPMAALMSVADTLGTAHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 T(0.474)T(0.525)PPES(0.001)APQNGPSPMAALMSVADT(0.004)LGT(0.011)AHS(0.985)PK;T(0.479)T(0.52)PPES(0.001)APQNGPSPMAALMSVADT(0.003)LGT(0.014)AHS(0.983)PK;T(0.461)T(0.539)PPESAPQNGPSPMAALMSVADTLGT(0.001)AHS(0.999)PK 167.03 7.9992e-14 643180000.0 314948.0 226229.0 193935.0 181493.0 199913.0 281569.0 298077.0 267401.0 453630.0 285159.0 True False 313252.3549620125 233758.89550668167 221239.3622867615 204469.99519110334 225370.73557281552 262104.79777213177 283657.8767452813 287355.8204547648 341838.9648305757 266959.90848309733 1.1734059872209095 0.8756329623984802 0.8287362830766378 0.7659202325657429 0.8442119150152652 0.9818133339251089 1.0625485989902532 1.0764006553926386 1.28048802074046 1.0 18.026263571497445 2.2629570348341943 1.9062798716960165 1.1225289919921184 0.8864610882526895 0.3959710677267416 0.12076698672379126 0.3367859920701527 2.4742556624768084 0.05982545516116204 0.03950066602397745 183.2133158730594 -2.2629570348341943 -0.23606790373942887 TT(ph)PPPGRPPAPS(ph)SEEEDGEAVAH ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPPPGRPPAPSSEEEDGEAVAH 23 1 Q96KN1 Q96KN1 FAM84B Protein FAM84B 2 T(0.43)T(0.57)PPPGRPPAPS(0.535)S(0.465)EEEDGEAVAH 78.128 0.031942 331790000.0 61680.0 39577.0 40398.0 45513.0 41836.0 53885.0 49939.0 45414.0 56400.0 50569.0 True False 61347.921733292234 40894.29652019827 46085.687254289296 51274.94113344695 47163.5666186006 50160.0567816461 47523.25978449397 48803.02328761931 42500.97572128054 47341.643125700946 1.2958553544582725 0.863812360961284 0.9734703785401607 1.0830832592206898 0.9962384806410812 1.0595334988365683 1.0038362981679954 1.0308688094757954 0.8977503296290852 1.0 15.53082215930516 4.755354883467598 24.99999999956172 0.9976774237084661 1.2958555885104603 0.6725821532751447 0.06384251290491015 2089.0701132590384 3109745.585084288 0.01499619435338215 0.43199436299450805 56931.79586375779 -4.755354883467598 0.2981781648019942 TT(ph)PPPGRPPAPSSEEEDGEAVAH ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPPPGRPPAPSSEEEDGEAVAH 23 1 Q96KN1 Q96KN1 FAM84B Protein FAM84B 1 T(0.445)T(0.555)PPPGRPPAPSSEEEDGEAVAH 118.9 0.00038469 909820000.0 163650.0 134320.0 115940.0 129130.0 124900.0 169770.0 146120.0 141980.0 184330.0 159170.0 True False 162768.92658322427 138790.76000184542 132263.34423145448 145477.84476000277 140805.2746597002 158034.19949559364 139051.61736739345 152575.2685598315 138904.3413954545 149011.6343277071 1.0923236116266066 0.9314088837963894 0.8876041446574587 0.9762851432128258 0.9449280607851099 1.0605494007806402 0.9331594676801575 1.02391514090965 0.9321711155115271 1.0 17.185065450302908 TT(ph)PTMSEEPPLDLTGK ddPTM_BT-474_Trastuzumab_2h_R1 4 TTPTMSEEPPLDLTGK 16 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 T(0.177)T(0.788)PT(0.035)MSEEPPLDLTGK;T(0.12)T(0.88)PTMSEEPPLDLTGK;T(0.283)T(0.714)PT(0.003)MSEEPPLDLTGK;T(0.021)T(0.979)PTMSEEPPLDLTGK 288.06 2.3153999999999998e-35 1313231000.0 1129900.0 981460.0 822210.0 828370.0 863510.0 1079020.0 1104090.0 1032230.0 1481510.0 969140.0 True False 1123816.7439436924 1014127.3027949003 937970.0212225657 933241.5570653105 973472.8800752405 1004429.8871398672 1050680.9486666124 1109260.2441577332 1116411.7117169201 907288.6554775024 1.2386540238974246 1.1177559607655065 1.0338165429048771 1.0286049003601276 1.0729472634736137 1.1070676141224753 1.1580448430865073 1.2226100673262954 1.2304923080178458 1.0 19.79120209417963 2.2219524839952856 3.5908415027716942 1.178567370066265 1.0920952978881404 0.05984288577405872 0.08159802076837498 0.390013919178544 10.722650320185561 0.031964684499191265 0.02380682348633986 166.70648096053566 -2.2219524839952856 -0.08647207217812469 TT(ph)PTQPSEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPTQPSEQK 10 0 O95104-2;O95104-3;O95104 O95104-2 SCAF4 Splicing factor, arginine/serine-rich 15 1 T(0.143)T(0.851)PT(0.005)QPSEQK 99.283 0.053669000000000015 809880000.0 801330.0 565500.0 480310.0 485560.0 501480.0 758060.0 748940.0 689750.0 1116000.0 725330.0 True False 797015.7283161329 584322.3256480308 547933.473070639 547031.8462144111 565340.505495168 705657.096481296 712710.9109713632 741222.6474795307 840976.7536338483 679038.8184137454 1.1737410391028675 0.8605138760888883 0.8069251097464908 0.8055973110525456 0.8325599217078931 1.039199935770582 1.0495878757510164 1.0915762506936622 1.2384811159962765 1.0 19.373134525390203 2.5508454003055134 3.2200384507497866 1.0974845112732894 0.8844226148870883 0.403444838538207 0.11481250677873034 0.2504466835562854 5.065492700796073 0.04096315968829736 0.036987276134199824 355.5047438352433 -2.5508454003055134 -0.2130618963862011 TT(ph)VAPLDRVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTVAPLDRVK 10 1 P16260 P16260 SLC25A16 Graves disease carrier protein 1 T(0.446)T(0.554)VAPLDRVK 75.695 0.061794000000000016 284510000.0 248090.0 666630.0 732870.0 730730.0 749650.0 584620.0 497340.0 389600.0 292810.0 529270.0 True False 246754.3110053901 688818.3765636549 836051.7257797652 823240.3430765655 845113.483976335 544206.5954474517 473281.7641767008 418673.9303487134 220650.89895298108 495491.5354691554 0.49799904406389334 1.3901718339374824 1.687317877162424 1.6614619708832798 1.7056062989575405 1.0983166340716002 0.9551762851580797 0.844966866996613 0.4453171914310466 1.0 18.918500886357194 2.3014196358450207 2.1987411813099746 0.7756709436224415 1.4174675472234974 0.3675789292027547 0.3547537496625473 0.33004491374101813 3.2684888707506747 0.1617548878025363 0.11581039994744662 200.17951645171277 -2.3014196358450207 0.641796603601056 TTAAHGLELR ddPTM_BT-474_Trastuzumab_2h_R1 7 TTAAHGLELR 10 0 P08243-2;P08243;P08243-3 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ;;;;;; 163.66 6.3944e-06 2194860000.0 2085280.0 2496290.0 2626470.0 2368130.0 1926010.0 2039260.0 2210580.0 2008250.0 3436490.0 2326680.0 False True 2074053.08417639 2579377.50361083 2996254.146313511 2667935.01519016 2171275.9571443493 1898290.7561016893 2103645.800164337 2158115.8126868694 2589613.0861067963 2178189.2904290357 0.9521913881818168 1.1841842740411108 1.3755710577951386 1.2248407550771951 0.9968261099643344 0.8714994442598627 0.9657773130222231 0.9907843281433946 1.188883398465669 1.0 21.054697902854137 3.2330652061436203 24.175291171604215 0.9926562252157509 1.1978655713756559 0.3472375561064668 0.12117394957918796 92.87904557002742 408591.8181424151 0.036103350232930057 0.04436829748407921 1710.2720806721968 -3.2330652061436203 0.20520934615990494 TTAGS(ph)VDWTDQLGLR ddPTM_BT-474_Trastuzumab_2h_R1 5 TTAGSVDWTDQLGLR 15 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 TTAGS(1)VDWTDQLGLR;TTAGS(1)VDWTDQLGLR;TTAGS(1)VDWTDQLGLR;TT(0.001)AGS(0.998)VDWTDQLGLR;TTAGS(1)VDWTDQLGLR 351.7 2.2930999999999993e-82 1291440000.0 1352670.0 1195890.0 1186600.0 1275490.0 1373300.0 1429510.0 1248290.0 1127330.0 1682920.0 1272400.0 True False 1345387.3750157643 1235694.47571923 1353662.965887906 1436966.9032210656 1548181.61481318 1330691.338404582 1187905.443769117 1211457.0890657485 1268186.915972649 1191194.3426435546 1.129444060345365 1.037357575907319 1.1363913657311313 1.206324486088543 1.2996885221746288 1.1171068319980846 0.9972389905184247 1.0170104454804796 1.064634770811813 1.0 20.18397737656076 2.369878130068213 5.02616679212124 1.0206642634880492 1.1605796739575958 0.520527376409196 0.06431996018418129 0.19045812317994992 7.698827012149782 0.02542314262568227 0.02106486697850089 234.3571079758568 -2.369878130068213 0.13991541046954659 TTAPTEGKS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TTAPTEGKSPLK 12 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 TTAPT(0.004)EGKS(0.996)PLK;TTAPT(0.002)EGKS(0.998)PLK 130.06 0.00013519999999999998 446760000.0 502550.0 317460.0 278824.0 253815.0 234254.0 468890.0 442290.0 455410.0 729790.0 455920.0 True False 499844.3266385542 328026.46419137716 318079.9956183463 285947.952975762 264084.8583677611 436476.7379483355 420894.74298812257 489395.0067251232 549943.0331849877 426822.79526724975 1.171081610872219 0.7685307997338509 0.7452272913849048 0.6699453640865627 0.6187224799050567 1.02261815157984 0.9861112097459195 1.146599975801889 1.2884575034017285 1.0 18.703277702475475 2.317179984900563 1.947834186550479 1.1401492880256878 0.7880191459013526 0.4482779921000657 0.16163168064442146 0.2944277575198473 2.2785983146637196 0.07594777120220378 0.053234443358492735 207.57736032136745 -2.317179984900563 -0.35213014212433524 TTAPTEGKS(ph)PLKK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTAPTEGKSPLKK 13 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 TTAPT(0.003)EGKS(0.996)PLKK;TT(0.001)APTEGKS(0.999)PLKK;TTAPT(0.009)EGKS(0.99)PLKK 107.98 0.00065358 3618370000.0 7084120.0 3872170.0 3292780.0 3065800.0 3043060.0 5858530.0 6072060.0 5229720.0 10239610.0 4997090.0 True False 7045979.885039719 4001052.8376738094 3756374.802643166 3453929.9656564468 3430575.653370275 5453543.610596212 5778331.260278228 5619988.262380066 7716195.319244343 4678171.437976007 1.506139733965828 0.855259985812929 0.8029579190172532 0.738307693817817 0.7333155056101365 1.1657425733323843 1.2351687698683826 1.2013215712358614 1.649404136113217 1.0 22.1575133015117 2.54524410116482 4.889038522929388 1.270077246646392 0.9064500290295001 0.28964503397926344 0.2558917125449319 0.2692360970564513 12.393058589380276 0.08520090185507903 0.07870829544983056 350.9490742641572 -2.54524410116482 -0.363627217616892 TTAPTEGKS(ph)PLKKEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTAPTEGKSPLKKEDR 16 3 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 TTAPT(0.003)EGKS(0.997)PLKKEDR 88.396 0.033952 393470000.0 168010.0 113970.0 113150.0 102910.0 88151.0 166480.0 177740.0 188470.0 354540.0 151720.0 True False 167105.45282766593 117763.42255368026 129080.53648256915 115938.39544839994 99376.50733808838 154971.62945176655 169142.03716726316 202534.58843126812 267168.3675926027 142037.09970597297 1.1764915868712207 0.8291032610315123 0.9087804295481614 0.8162543144601008 0.6996517638265278 1.0910644456453207 1.1908299839788292 1.425927372852088 1.8809759432265263 1.0 17.115908281428123 2.094868994343672 1.843645996542926 1.4793265461299525 0.8859464862720137 0.5026242396984724 0.23294962707017283 0.2566615691731797 1.6717528415942489 0.12563842355837787 0.06942358375317872 124.41392584745341 -2.094868994343672 -0.5933800598579388 TTCHAPGHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTCHAPGHEK 10 0 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 0 96.113 0.0040258 25779000.0 28278.0 31396.0 28759.0 25913.0 25734.0 33448.0 32264.0 8901.8 41012.0 27760.0 False True 28125.75438998117 32440.99688071722 32808.017222290844 29193.583143080246 29011.072362631887 31135.818488122823 30703.267059550923 9566.097518424494 30905.142132644607 25988.333033468305 1.0822454196565918 1.2482907941397796 1.2624132983073602 1.1233341940587014 1.1163113973208991 1.1980690892342145 1.181425027146244 0.3680920013648078 1.1891929387254017 1.0 14.665576477712147 1.8708770359749738 19.422045244182733 0.7801803916436446 1.1764255152750194 0.3261379041973934 0.2034199565949974 2.63664382439402 392.4429146669356 0.07904567400755513 0.05097932237171963 74.28087928551982 -1.8708770359749738 0.39624512363137476 TTCMSSQGS(ph)DDEQIKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTCMSSQGSDDEQIKR 16 1 E7EW69;E7EX04;B5ME97;Q9P0V9;Q9P0V9-2;C9JEW2;C9JNR7 E7EW69 SEPT10 Septin-10 1 TTCMS(0.002)S(0.068)QGS(0.93)DDEQIKR 93.73 0.0026537 343980000.0 79718.0 66302.0 54842.0 50760.0 60208.0 84780.0 71655.0 80352.0 92389.0 91857.0 True False 79288.80714550242 68508.82198959457 62563.27690479064 57186.21079545992 67875.13191922521 78919.35815065326 68188.7739013179 86348.27425918862 69620.96889917357 85994.60761726573 0.9220206864410769 0.7966641617170374 0.7275255814090066 0.6649976362468831 0.7892952104777957 0.9177244985162079 0.7929424389585465 1.0041126606856206 0.8095969134371083 1.0 16.39195857648352 2.7869625529458166 5.321353238763625 0.9041886959005274 0.7704853074315593 0.3326820831235072 0.08802159917803343 0.23908119760356727 16.091527272901473 0.02745855369239286 0.028795056314239263 612.2975940709209 -2.7869625529458166 -0.13370338846896812 TTDEELS(ph)ELEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTDEELSELEDR 12 0 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C190;H7C2D8;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36 MLPH Melanophilin 1 TTDEELS(1)ELEDR;TTDEELS(1)ELEDR 236.83 4.5774e-16 1016150000.0 1025590.0 878450.0 711150.0 811100.0 780730.0 773060.0 776070.0 820240.0 1022470.0 788630.0 True False 1020068.3373937602 907688.6772157619 811273.7385733906 913785.1768360444 880151.3377507416 719620.1817874972 738528.5292246987 881450.4738943256 770495.9688960589 738298.9582198879 1.3816467245914124 1.2294324231532026 1.0988417761409988 1.237689917698477 1.192134064326562 0.9747002535701431 1.0003109458604198 1.1938936985900537 1.043609719772328 1.0 19.49384559723406 7.999999999995645 0.39680669720806944 1.062409574922055 5.918683340058602 0.5954763945398446 0.0801365430093321 56.07469413772466 0.7490042227004591 0.05990752335569109 212.28754762824238 99999999.99899729 -7.999999999995645 4.856273765136548 TTDEELSELEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTDEELSELEDR 12 0 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C190;H7C2D8;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36 MLPH Melanophilin 0 ; 166.69 0.00011918 1030420000.0 557370.0 564090.0 564520.0 550590.0 506130.0 542660.0 570160.0 546910.0 721720.0 639260.0 False True 554369.1818496287 582865.3946503937 643999.5091041977 620294.6375467362 570582.6554324584 505147.1914842362 542579.1825772858 587723.2013527076 543861.7765525279 598461.8795019791 0.9263232978363752 0.97393905044618 1.0760911115008922 1.0364814515219007 0.9534152048369047 0.8440758029644321 0.906622796140003 0.9820562035493257 0.9087659468053543 1.0 19.19089982853128 3.0506096876536675 6.923529480428745 0.926948080916995 1.0054766550681673 0.29950750379183855 0.05404110041481723 0.2646522425511834 28.447424139420352 0.01657948680257931 0.019799726506245806 1123.5947147154109 -3.0506096876536675 0.07852857415117231 TTDGVYEGVAIGGDRYPGSTFMDHVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTDGVYEGVAIGGDRYPGSTFMDHVLR 27 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 285.36 1.1535999999999995e-61 829590000.0 382830.0 451480.0 408470.0 433660.0 398510.0 437520.0 433270.0 374280.0 487260.0 488840.0 False True 380768.88581641123 466507.2388745763 465979.02551511297 488561.31153583835 449257.8863461736 407275.2722112984 412311.07484786835 402210.6741553299 367181.3019494882 457641.81268301967 0.8320238126496243 1.019371975955565 1.0182177690085061 1.0675626614437757 0.9816801566104864 0.889943315763835 0.900947123757354 0.8788765864667974 0.8023333790171224 1.0 18.803859345160273 2.7535713551386216 4.935093700931628 0.8864315525912827 0.9930939765231427 0.2667987886805806 0.0728571217076812 0.22305767495155768 16.089483454875772 0.02271408766480362 0.023110818315598053 566.9847201851737 -2.7535713551386216 0.10666242393185998 TTDGYLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 TTDGYLLR 8 0 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;H0Y9Y4;D6RB09;D6RAS7;D6R9B6;D6RED7 P61247 RPS3A 40S ribosomal protein S3a 0 ;; 109.86 0.008227600000000002 920880000.0 789400.0 1213430.0 1186750.0 1271480.0 1120890.0 928520.0 944750.0 713160.0 861330.0 909270.0 False True 785149.9581105846 1253818.2840160755 1353834.0845840846 1432449.2376322183 1263628.6974644624 864333.597900974 899048.8332045238 766379.6205531021 649066.7627306831 851239.6101347886 0.9223606946418541 1.4729322614786935 1.5904265596495366 1.682780289565471 1.4844571169149126 1.015382258544233 1.0561642368382798 0.9003101023832181 0.7624959588380847 1.0 19.69920575875272 2.6696746461656176 3.9069036058745215 0.9356892879862541 1.4571229230674314 0.5895572992477354 0.2018558291637247 0.16691224118732403 5.016589932394535 0.07006552799833113 0.06675236320030678 467.38486644078597 -2.6696746461656176 0.5214336350811773 TTEINFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTEINFK 7 0 P29373;Q5SYZ4;P29762;B5MCB5 P29373;P29762 CRABP2;CRABP1 Cellular retinoic acid-binding protein 2;Cellular retinoic acid-binding protein 1 0 80.098 0.071733 84992000.0 184580.0 177800.0 157770.0 158440.0 153080.0 191830.0 177130.0 151750.0 247060.0 203380.0 False True 183586.2417887658 183717.9655176305 179982.64463857686 178498.48775478065 172573.83062375418 178569.24361924807 168561.5451976897 163074.3555708863 186175.37343438953 190400.11427762182 0.9642128760546816 0.964904701946512 0.9452864317935478 0.9374914948554735 0.9063746168351812 0.937863111567658 0.8853017018251924 0.8564824458724226 0.9778112483846927 1.0 17.5386748189845 3.7117399758404224 1.349366305359672 0.913017820064795 0.9657856581196758 0.04443955216716655 0.04067483974114812 0.7658555821581151 2.6820529656867564 0.012957915938403074 0.03251305675337229 5149.202552226105 -3.7117399758404224 0.05276783805488072 TTELQDELSHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTELQDELSHLR 12 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019;E9PPQ0;C9JF50;E9PLU1;E9PRK5;Q9H019-2 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 0 ; 204.48 1.1290999999999997e-07 204211000.0 204700.0 259880.0 210600.0 239130.0 222660.0 260400.0 235570.0 205420.0 267030.0 226700.0 False True 203597.9179443081 268529.94869922264 240250.64943198493 269403.8334814485 251014.43119078325 242399.16091566565 224174.57913520985 220749.48350162443 201224.0345186795 212231.81191236546 0.9593185682661822 1.2652671919424772 1.1320199703670673 1.2693847875769466 1.1827370690989147 1.142143389021043 1.0562722765980803 1.0401338117622823 0.9481332355668184 1.0 17.695281395762034 1.9953498287587164 1.4823914791964599 0.9853020738765323 1.1717367645057675 0.4446497691498763 0.08298397968722339 0.34939100758631275 1.431001047018539 0.053352811322127824 0.025399268518622533 98.93497053356398 -1.9953498287587164 0.18643469062923512 TTEYHDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTEYHDR 7 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 63.48 0.079181 104560000.0 62551.0 68387.0 61772.0 59724.0 67482.0 76335.0 62054.0 65560.0 72345.0 56946.0 False True 62214.23236606943 70663.21995418554 70468.9606681509 67285.05227636034 76075.43270284939 71058.1411232617 59052.210950699635 70452.42010693446 54516.54412333399 53311.65752607653 1.1669911470233008 1.3254740751517953 1.3218302326031066 1.262107677733504 1.42699432418957 1.3328818577532457 1.1076791398169379 1.3215199709833407 1.0226008091507586 1.0 15.702163417526824 1.2322301667300646 24.419419500039982 1.0113000635347194 1.2846725721329186 0.6185619147328689 0.08539495012347796 76.81852757302944 296305.0383303901 0.07428102666262726 0.020411762399322627 17.06986815599194 -1.2322301667300646 0.2733725085981993 TTEYHDRDEQFYWIIEALGIR ddPTM_BT-474_Trastuzumab_2h_R1 3 TTEYHDRDEQFYWIIEALGIR 21 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ;; 174.74 1.565e-12 1554617000.0 841140.0 947075.0 862044.0 1013757.0 975642.0 1010480.0 1143524.0 931952.0 1140353.0 1019529.0 False True 836611.3956994388 978597.8188560737 983412.3021792294 1142098.5322571537 1099884.225616807 940627.8960140613 1088207.3754341041 1001498.9905963672 859328.283097329 954461.7863573087 0.8765268632622323 1.0252875838967632 1.0303317704655417 1.1965890605384613 1.152360672096157 0.9855060825472707 1.1401267090924967 1.0492813907391467 0.9003275933937014 1.0 19.864327912258357 1.3327172639416773 7.148847821030164 0.9513568078821003 1.0645528785128642 0.1828969257068097 0.08956615357674622 0.3346350118184196 20.985879028262588 0.062062291440010076 0.02245379719932722 21.513806786174495 -1.3327172639416773 0.11319607063076387 TTFDEAMADLHTLSEDSYK ddPTM_BT-474_Trastuzumab_2h_R1 8 TTFDEAMADLHTLSEDSYK 19 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 ;;;;;;; 312.21 1.4676999999999993e-61 2189258000.0 2353909.0 2072378.0 1943875.0 1768772.0 1777927.0 2631004.0 2550302.0 2250398.0 3368605.0 2523161.0 False True 2341235.815487877 2141355.848951047 2217555.7035356103 1992698.3538437234 2004335.464851053 2449128.886197232 2426934.1491602696 2418334.1260494976 2538457.4347443986 2362130.7047931873 0.9911542196784832 0.9065357156595321 0.9387946649335668 0.8436020707068329 0.8485286020726527 1.036830384206729 1.0274343177689467 1.0237935272346546 1.074647321417656 1.0 21.171657365532496 2.723649268317922 24.72160753838063 1.032708452441464 0.9041543495309468 0.6849445444089812 0.04299813864935115 412.20018000317447 683387.8662973656 0.014337561802188741 0.013569882118291136 529.2358659101632 -2.723649268317922 -0.12855410291051728 TTFEDLIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTFEDLIQR 9 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;O94979-7;H7BXG7;H0Y8W8;H0YAF5 D6REX3 SEC31A Protein transport protein Sec31A 0 ; 166.3 0.00014156 323950000.0 372330.0 445930.0 399050.0 424020.0 393820.0 444770.0 445030.0 393760.0 538920.0 439430.0 False True 370325.41664975183 460772.5104796225 455232.7713952209 477700.8885242504 443970.64264598186 414024.0967759621 423502.1987203058 423144.37067276536 406110.38715802314 411385.20118504926 0.9001913913844755 1.1200512540371084 1.1065851909204876 1.1612009550858176 1.079209075501661 1.0064146585324683 1.0294541405484494 1.0285843279093225 0.9871779198380707 1.0 18.65013037097114 2.7466414841794013 19.48915927859087 1.0150297307026772 1.0827529352642358 0.17992587548167993 0.06551498788916338 50.25044568118688 121189.65882280991 0.02015934050896774 0.02090986554550622 558.0093604666947 -2.7466414841794013 0.06772320456155856 TTFFHHEYPWILSASDDQTIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTFFHHEYPWILSASDDQTIR 21 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ; 251.19 1.2286e-31 2045820000.0 807620.0 965860.0 913570.0 963250.0 910590.0 947620.0 996950.0 603910.0 1070780.0 861700.0 False True 803271.8636550173 998008.0662253015 1042192.7151072095 1085197.3512357515 1026548.2390102202 882113.2598575382 948723.7197811591 648976.8307928442 806900.6167168933 806705.5682615131 0.9957435466648686 1.2371404208552246 1.2919121376008125 1.3452210991606277 1.272519094199979 1.0934761015205734 1.1760470698444556 0.8044779363447541 1.000241783945784 1.0 19.621682688563308 1.851067310323746 6.03743196165377 0.9217910464341212 1.2134235636086204 0.5627883142289021 0.10760117033028659 0.15984261256515525 7.261602752676293 0.04949513901065158 0.029694485334633754 70.96877523466162 -1.851067310323746 0.2916325171744991 TTGFGMIYDSLDYAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTGFGMIYDSLDYAK 15 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4;A0A2R8Y8A0 E7ETK0 RPS24 40S ribosomal protein S24 0 128.54 0.00059503 0.0 159370.0 130270.0 258880.0 127840.0 180220.0 269610.0 339480.0 237910.0 241350.0 329990.0 False True 158511.96962767138 134605.95820012208 295328.05377470213 144024.5308922696 203169.94875237113 250972.49529367394 323058.0554604621 255664.05228250145 181872.52642430924 308929.7556813472 0.513100362501734 0.43571703833852937 0.9559715383303029 0.466204786828068 0.6576574286419191 0.8123934023129367 1.0457330494045638 0.8275798869507801 0.5887180599459829 1.0 18.236919310460475 2.746698897836256 3.6902825462770146 0.8621905060164858 0.6040401583106881 0.33853969521570404 0.176017424819433 0.2808463770887182 8.50652053147558 0.05732446150228895 0.05768424000245659 558.0831340858367 -2.746698897836256 -0.2581503477057977 TTGIVMDSGDGVTHTVPIYEGYALPHAILR ddPTM_BT-474_Trastuzumab_2h_R1 11 TTGIVMDSGDGVTHTVPIYEGYALPHAILR 30 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;;;;;;; 381.85 3.742299999999999e-138 108047210000.0 10247538.0 12737336.0 12892174.0 13481527.0 12751568.0 14294575.0 15128832.0 11428588.0 17434799.0 14305602.0 False True 10192366.394016502 13161290.528877776 14707280.038414773 15188286.935907897 14375404.600334994 13306424.676060116 14396992.598409379 12281447.269753983 13138226.400787326 13392606.232717952 0.7610442819648272 0.9827281038641251 1.0981641498937742 1.1340800044432817 1.0733836529305312 0.9935649898787217 1.07499558698573 0.9170319097227377 0.9810059500361341 1.0 23.674933404047884 4.712566185616066 3.589442103690175 1.0311997136707687 0.7370921802302673 0.6421477596661949 0.06079436563627614 0.17693717674022216 4.133056171361716 0.016625895329155257 0.1342181980456701 51590.07813356144 -4.712566185616066 -0.29410753344050133 TTGMSQS(ph)TELLPDATDEEVAPPKPPLPGIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTGMSQSTELLPDATDEEVAPPKPPLPGIR 30 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 TTGMS(0.006)QS(0.796)T(0.198)ELLPDATDEEVAPPKPPLPGIR;TTGMS(0.006)QS(0.796)T(0.198)ELLPDATDEEVAPPKPPLPGIR 230.55 1.4835e-35 676940000.0 665800.0 562800.0 554450.0 516080.0 532070.0 720780.0 643850.0 658690.0 856210.0 700380.0 True False 662215.4067773343 581532.4577802155 632511.7406342077 581415.6750851261 599825.9606740325 670954.1751336156 612704.5157541495 707844.7925600471 645208.5181261982 655681.1487745148 1.009965602968809 0.8869134927351731 0.9646636048884258 0.8867353837635978 0.9148134909706079 1.0232933742073362 0.9344549815093972 1.0795564183643644 0.9840278606943479 1.0 19.322634891549054 2.738409874249845 24.998744993553338 1.009142858355051 0.9293103989383642 0.3547586422256578 0.047985771641189404 13.652145507620693 2263914.360434388 0.014550394313124748 0.014513052141795537 547.5324640248825 -2.738409874249845 -0.07983245941668682 TTGT(ph)PPDSSLVTYELHSRPEQDK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTGTPPDSSLVTYELHSRPEQDK 23 1 Q13561;Q13561-3;Q13561-2;H0YI98;F8W1I6;F8VW18 Q13561 DCTN2 Dynactin subunit 2 1 T(0.024)T(0.024)GT(0.953)PPDSSLVTYELHSRPEQDK;T(0.003)T(0.003)GT(0.995)PPDSSLVTYELHSRPEQDK;T(0.125)T(0.125)GT(0.75)PPDSSLVTYELHSRPEQDK 331.99 2.094399999999999e-86 994510000.0 1551750.0 1273940.0 1141130.0 1016050.0 1079950.0 1659690.0 1583440.0 1429630.0 2179100.0 1561530.0 True False 1543395.5504156314 1316342.3227870066 1301791.185120233 1144681.8258220474 1217475.2311348536 1544959.5367900198 1506842.9578717854 1536316.2501140456 1642090.003444015 1461871.8185069056 1.055766675899116 0.9004498931592124 0.8904961219170555 0.7830247572534624 0.8328194139335223 1.0568365278208705 1.030762710379636 1.0509240486509785 1.1232790608968553 1.0 20.4793853861469 2.727470352176285 24.45794109557008 1.0532700822446497 0.8867578538537767 0.5568600125748888 0.07120330601463708 418.2674144398918 922425.2466840736 0.02392499203447272 0.02276142123205035 533.9128238971431 -2.727470352176285 -0.16651222839087298 TTGT(ph)PPDSSLVTYELHSRPEQDKFSQAAK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTGTPPDSSLVTYELHSRPEQDKFSQAAK 29 2 Q13561;Q13561-3;Q13561-2;H0YI98;F8W1I6;F8VW18 Q13561 DCTN2 Dynactin subunit 2 1 T(0.16)T(0.16)GT(0.616)PPDS(0.044)S(0.016)LVT(0.003)YELHS(0.001)RPEQDKFSQAAK;T(0.18)T(0.18)GT(0.641)PPDSSLVTYELHSRPEQDKFSQAAK;T(0.043)T(0.043)GT(0.912)PPDS(0.001)SLVTYELHSRPEQDKFSQAAK 197.8 4.1111e-25 1918350000.0 1123201.0 962007.0 926019.0 915350.0 917031.0 1340340.0 1419410.0 1231060.0 2055120.0 1416890.0 True False 1117153.8106153628 994026.8214494892 1056394.4260985611 1031233.2161470494 1033809.4621814197 1247685.450620982 1350747.7156272356 1322927.9483960152 1548663.2131971288 1326462.8671394421 0.8422051142860405 0.749381566626994 0.7963995466957233 0.7774308966303259 0.7793730889812706 0.9406109145834245 1.0183079746063035 0.9973350790052268 1.1675134310671422 1.0 20.339152858804383 2.495324476277821 1.8461382117738407 1.0478615276175614 0.7833804776767581 0.8538794571798093 0.05021218381789576 0.12059496193554639 0.8317386939985376 0.02075909603846714 0.016853567888482027 312.84158407782024 -2.495324476277821 -0.26448104994080324 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR 30 0 P61163;R4GMT0;A0A1B0GVS3;P42025 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin 0 239.47 3.4445999999999994e-46 138250000.0 60297.0 85791.0 62920.0 63170.0 58398.0 70718.0 66781.0 70180.0 100220.0 100610.0 False True 59972.367651626475 88646.50157324538 71778.58908955596 71167.31552303398 65834.63914793568 65829.43111226588 63550.54790180608 75417.18796681907 75522.12387919733 94188.98366344544 0.636723800587113 0.9411557288907122 0.7620698971127458 0.7555800344690827 0.6989632607479337 0.6989079672787059 0.6747131716473752 0.8007007298889491 0.8018148295245627 1.0 16.52327071174935 0.7264537386639891 1.5015676477641422 0.9993408272328346 0.7468171073313639 0.4864984791699476 0.07878041372056782 0.811092721709029 2.963593305525308 0.07402128115447978 0.02154436867521176 5.326644815273168 -0.7264537386639891 -0.2525237199014707 TTGYSDRPTAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TTGYSDRPTAR 11 1 Q9NP61;Q9NP61-2 Q9NP61 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 0 ;; 131.43 0.00018554 523600000.0 278133.0 306734.0 313670.0 335204.0 298042.0 323629.0 340852.0 296392.0 394470.0 365207.0 False True 276635.56283148105 316943.45576538116 357832.00953148515 377640.7920307599 335995.8820666641 301257.288970722 324363.6865789133 318510.27608808037 297258.15412718983 341899.1765905567 0.8091144459314319 0.9270085377974999 1.0466009690336544 1.104538465978834 0.9827338147381323 0.8811290274954198 0.9487115172767933 0.9315912347736192 0.8694322024740441 1.0 18.38321142271221 2.778190147533508 21.353522151355627 0.9247020877018237 0.9826743770278847 0.0775604365912943 0.07962805200695053 238.0126309664697 128246.19308190657 0.02581334510356569 0.027377830548952653 600.0537408050474 -2.778190147533508 0.05797228932606102 TTHFVEGGDAGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTHFVEGGDAGNR 13 0 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ; 151.7 4.4861e-05 810070000.0 817440.0 781850.0 713860.0 743950.0 767220.0 806750.0 759950.0 564900.0 855100.0 771910.0 False True 813038.9938661217 807873.4046116937 814365.2830176484 838133.9937210886 864920.9193307849 750981.2713852269 723188.3152090784 607055.7065040777 644372.0627529612 722646.0429345996 1.1250860664294855 1.117937906822258 1.1269213897727652 1.1598126107734612 1.1968804476094825 1.0392103834618127 1.000750398178722 0.8400457076314705 0.8916842056399079 1.0 19.462929652535742 2.2483672210450707 2.060339052008215 0.898166326599025 1.1418283884987417 0.8103351305102147 0.04849374675673517 0.11860839788347483 1.0209363224700654 0.022371264789126766 0.014936310378020888 177.1606320548295 -2.2483672210450707 0.24366206189971673 TTHFVEGGDAGNREDQINR ddPTM_BT-474_Trastuzumab_2h_R1 7 TTHFVEGGDAGNREDQINR 19 1 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ;;;;;; 233.63 2.4519000000000003e-24 35188520000.0 4285904.0 4504810.0 4270060.0 4835950.0 4208208.0 4332813.0 4839250.0 3060228.0 4998910.0 4607510.0 False True 4262829.169072698 4654749.87763485 4871247.331973129 5448180.774158877 4744098.344797018 4033295.8356547183 4605156.989769772 3288597.7528829165 3766995.612462166 4313454.767112232 0.9882633293327829 1.079123377651902 1.1293145738107109 1.2630666294911261 1.099837276831604 0.9350499897220265 1.0676261230050705 0.7624045991989303 0.8733128816334131 1.0 22.040412396611657 2.328884533568393 1.497208311008797 0.8719098026544061 1.1161755010441938 0.45057846001787283 0.09935373863236725 0.3266282446610909 1.4668041345438243 0.05437975467124764 0.03553401237446283 213.2477873139516 -2.328884533568393 0.24426569838978773 TTHLAGALS(ph)PGEAWPFESV ddPTM_BT-474_Trastuzumab_2h_R1 6 TTHLAGALSPGEAWPFESV 19 0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV 222.27 2.5936e-19 501905000.0 395542.0 456016.0 413501.0 431109.0 437235.0 474422.0 476366.0 295084.0 519654.0 447902.0 True False 393412.44582084747 471194.2168925069 471718.34658487764 485687.355197399 492914.2855551164 441626.3238092621 453322.3566851613 317104.666486191 391592.2347068497 419316.51089180494 0.9382231216799345 1.123719683468624 1.1249696454394895 1.1582834030657083 1.1755184276115989 1.0532051859107778 1.0810982751932008 0.7562417845454519 0.9338822215085423 1.0 18.677680112903378 1.7631235011928363 24.99999999999928 0.8745284419762153 1.1000289455730374 0.5242134967583312 0.08500894222630236 9.408898668450952 9583.055234166768 0.0381663692972619 0.021166209494138954 57.95934931580594 -1.7631235011928363 0.22550050359682217 TTHLAGALS(ph)PGGGQSAPAFPESGPSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 TTHLAGALSPGGGQSAPAFPESGPSLR 27 0 A0A2R8Y4Z8 A0A2R8Y4Z8 1 TTHLAGALS(1)PGGGQSAPAFPESGPSLR;TTHLAGALS(1)PGGGQSAPAFPESGPSLR;TTHLAGALS(1)PGGGQSAPAFPESGPSLR 235.77 3.3300999999999997e-45 3145310000.0 1229200.0 1374060.0 1223810.0 1283170.0 1233330.0 1355980.0 1283800.0 752170.0 1165950.0 996400.0 True False 1222582.1237769588 1419794.7564631882 1396111.8104527881 1445619.1904336144 1390387.264980369 1262244.294233579 1221697.689407746 808300.7448418683 878617.2454295569 932808.898939041 1.3106458623706316 1.5220639062063361 1.4966750553523869 1.5497484984093035 1.490538165493242 1.3531649362149434 1.3096977213631664 0.8665234066283182 0.9419048707928059 1.0 19.831222026262083 1.933108604110238 2.3461809932653552 0.9192178064840435 1.4681762671279086 0.8921726766758956 0.07998447491121613 0.08379465424578002 0.8443284404796121 0.04504178710778479 0.02312363875034653 85.72521916599632 -1.933108604110238 0.5489584606438651 TTHS(ph)PYEER ddPTM_BT-474_Trastuzumab_2h_R1 3 TTHSPYEER 9 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TTHS(1)PYEER;TTHS(1)PYEER;TTHS(1)PYEER 190.36 2.3929e-05 1680870000.0 856850.0 950460.0 838510.0 921170.0 903580.0 927680.0 871570.0 648510.0 1031140.0 953050.0 True False 852236.814804985 982095.4865347963 956564.9195404245 1037790.0275503132 1018645.557061745 863551.6651238276 829408.8293792701 696905.1092670554 777029.3635681057 892225.5330528434 0.9551809304189796 1.100725601490526 1.0721111244905053 1.163147644967529 1.1416906592847014 0.9678625337801026 0.9295954875236092 0.78108626513133 0.8708889566401649 1.0 19.767048909122646 2.394679370150761 2.4280935118150886 0.8639056260604385 1.0896068787179578 0.5821927935153444 0.07499093659179037 0.1775790671686094 2.1426434305664914 0.029983488769075632 0.02372039588109114 248.1300540520467 -2.394679370150761 0.22570125265751928 TTIENIQLPHTLLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTIENIQLPHTLLSR 15 0 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;A0A3B3ITP6;E5RG31 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 130.95 5.6561e-05 365540000.0 319020.0 334450.0 301530.0 339500.0 318780.0 401900.0 393050.0 323520.0 415680.0 369720.0 False True 317302.43176645413 345581.966070706 343982.8030542562 382480.6651902805 359374.74344290775 374117.5989708375 374036.66990318865 347662.7052012728 313241.23382662894 346124.15306678275 0.9167301066829404 0.9984335476410047 0.9938133470503187 1.1050389341551756 1.038282767205698 1.08087689245614 1.0806430773151516 1.0044450874660376 0.9049967505913717 1.0 18.40093009289439 4.725925305365979 1.6230761111388456 1.033389456603893 0.8780674890319095 0.2688064485731284 0.054110776214684554 1.3111919441404498 3.3745273481346776 0.014764837343338054 0.31893889851159407 53201.67494374112 -4.725925305365979 -0.15532196757198358 TTIESHTK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTIESHTK 8 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 ;; 133.55 0.0009147 322642000.0 299086.0 330132.0 292651.0 302408.0 312966.0 313581.0 333896.0 300883.0 429935.0 367948.0 False True 297475.75420757866 341120.24405099207 333853.7170319075 340692.82179340895 352820.365005186 291903.88356027426 317744.1748734134 323336.41731291614 323983.2800838432 344465.24362386856 0.8635871389463052 0.9902892972954653 0.9691942023516658 0.989048468894067 1.0242553393585352 0.8474117170410738 0.9224273878277466 0.9386619500746392 0.940539825369464 1.0 18.393998897479314 2.7610799300505278 24.998976595366027 0.9265232354546477 0.969869730042105 0.11226674476773535 0.052016425052775594 1596.9497915896789 1772791.89191914 0.015502684757983614 0.016430891271825246 576.8726245734008 -2.7610799300505278 0.04334649458745732 TTIIWDAHTGEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TTIIWDAHTGEAK 13 0 Q9BZK7;A0A0D9SF63;A0A1B0GVH3;O60907;A0A2R8YFW3;Q9BQ87;O60907-2 Q9BZK7;O60907 TBL1XR1;TBL1X;TBL1Y F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y 0 ; 122.39 0.00023556 873910000.0 897510.0 808320.0 712470.0 726230.0 690720.0 965800.0 894920.0 846670.0 1288650.0 981010.0 False True 892677.9058827343 835224.4425602406 812779.5830997454 818170.6435379605 778679.0977818097 899036.5192486565 851629.3006736081 909852.8147031448 971079.4745253227 918401.101915084 0.971991327124161 0.9094331886346823 0.8849941288233512 0.8908641788777047 0.8478638539937281 0.9789148960883782 0.9272955998177258 0.9906922071477114 1.0573587863738314 1.0 19.80876484742436 1.8030929510926195 1.342717002898263 1.0291329756471388 0.9053575635694445 0.5930162850691489 0.03888500824365043 0.28406151989254613 0.9626913193211634 0.030573170881205945 0.012401580819697278 63.54669248861402 -1.8030929510926195 -0.12377541207769427 TTIPEEEEEEEEAAGVVVEEELFHQQGT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 1 TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR 223.16 3.7574999999999994e-34 386808000.0 150897.0 163566.0 142361.0 148270.0 151290.0 171447.0 147806.0 139467.0 172668.0 186577.0 True False 150084.58731823263 169010.195432265 162404.19137600553 167040.96679753443 170555.88473391533 159595.27243282678 140656.0591062478 149874.73573907636 130116.28503266076 174669.49612339385 0.8592489853649465 0.9675999483783311 0.9297799271217706 0.9563259212674988 0.9764491712590017 0.9136985906232992 0.8052697364334438 0.8580475644882983 0.7449284959334924 1.0 17.414268155765363 2.3900511250183234 5.547341490631355 0.8414460949022452 0.9405813922831924 0.2618590803636257 0.06715139880754127 0.227593888827392 11.297906997250195 0.021801239284447774 0.01814805667234559 245.49979003038771 -2.3900511250183234 0.09913529738094717 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR ddPTM_BT-474_Trastuzumab_2h_R1 7 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 0 ;;;;;; 349.64 4.134999999999998e-120 3334134000.0 386961.4 462820.0 423500.2 435751.4 439584.3 488529.0 443147.2 392570.7 507363.0 481154.9 False True 384878.0428178529 478224.6839194014 483125.34703027335 490917.4825614019 495562.7549847244 454758.14010356826 421710.4769493 421866.3190676227 382330.1869658878 450447.18234456505 0.8544354541515243 1.0616665008986297 1.0725460519380305 1.0898447183223348 1.1001572979218874 1.0095703956600746 0.9362040511704584 0.9365500231832293 0.8487791731227395 1.0 18.78099842567688 2.298429155589093 3.3410887876627315 0.9248286108191622 1.0431923455124303 0.31324317235417853 0.07346999156613179 0.27011582597493616 6.138841262941455 0.028143020017060982 0.021958476049035985 198.80584813390115 -2.298429155589093 0.11836373469326811 TTIPHALLTWRPNSGETAPPPPS(ph)PVSEKPLDTISQK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTIPHALLTWRPNSGETAPPPPSPVSEKPLDTISQK 36 2 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 TTIPHALLTWRPNSGETAPPPPS(0.919)PVS(0.054)EKPLDT(0.021)IS(0.005)QK 92.387 0.00028136 1527000000.0 1088300.0 933800.0 883740.0 799400.0 852700.0 1146600.0 1137400.0 971510.0 1266200.0 1016900.0 True False 1082440.7137214963 964880.9685059797 1008162.9103942184 900603.9580356709 961286.2906511319 1067338.2408060762 1082379.6167100545 1044009.009427821 954161.9762107342 952000.5713881087 1.1370168739953521 1.013529820784761 1.0589940181697786 0.9460119931677178 1.0097539009346221 1.1211529413788 1.136952696500844 1.0966474609417043 1.002270381854366 1.0 19.860602913871862 2.7502572214158807 24.840596178186413 1.0843398975001726 1.0285808687653093 0.06688576275031066 0.06181047119969765 1328.7135905273176 2821843.737360099 0.019016177971476714 0.02003167024290968 562.6744840985928 -2.7502572214158807 -0.05575902873486327 TTIPHALLTWRPNSGETAPPPPSPVSEKPLDTIS(ph)QK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTIPHALLTWRPNSGETAPPPPSPVSEKPLDTISQK 36 2 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 TTIPHALLTWRPNSGETAPPPPS(0.056)PVS(0.275)EKPLDT(0.221)IS(0.448)QK 79.071 0.0011087999999999998 255490000.0 329320.0 157400.0 156360.0 139640.0 158530.0 283420.0 276420.0 278860.0 542550.0 285640.0 True False 327546.9777108914 162638.96384969066 178374.1288945165 157318.40968238813 178717.85581907324 263827.84249891667 263048.50857305597 299669.94922238775 408845.8222975306 267410.21065129293 1.2248858295767089 0.6082002757246034 0.6670430738604785 0.5883036750886591 0.668328465782199 0.9866034728305579 0.9836890967341382 1.1206376469040744 1.5289087926065468 1.0 18.028695028030917 2.1081928474222225 1.3789360712527534 1.2425916251485505 0.7374833081353429 0.4525036678978521 0.21576560308781062 0.36635340443100384 1.3183547122741477 0.13886616593712756 0.07174274817616122 128.29001249157625 -2.1081928474222225 -0.5051083170132076 TTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLR ddPTM_BT-474_Trastuzumab_2h_R1 3 TTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLR 43 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 ;; 161.96 2.5088999999999998e-20 552480000.0 269311.0 339848.0 317873.0 370810.0 354750.0 334359.0 380150.0 71318.0 405210.0 149970.0 False True 267861.0594992647 351159.63523754576 362626.7553983542 417754.5079799942 399925.3097320148 311245.5493264247 361760.6921859747 76640.11130546614 305351.42503581697 140398.7862042232 1.9078587980784654 2.5011586263057226 2.5828339774311124 2.9754851824169695 2.848495493047112 2.216867807344779 2.576665382703237 0.5458744578744855 2.1748865021643042 1.0 17.099170937538563 1.7571716775676391 24.99999284586574 1.2269259049606556 2.5366523453973793 0.6073004286456507 0.46972475713079254 4.7387126272408 6371.761749919974 0.20757811322948483 0.11511424104407149 57.17045880954013 -1.7571716775676391 1.3097264404367237 TTNFAGILS(ph)QGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTNFAGILSQGLR 13 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 1 TTNFAGILS(1)QGLR 83.37 0.010735 19931000.0 20607.0 19669.0 19970.0 22603.0 16101.0 21319.0 21272.0 19377.0 31382.0 31023.0 True False 20496.054201652943 20323.670774838407 22781.60241764833 25464.537482462212 18151.366911896166 19845.267709527932 20242.992093068664 20823.010134412285 23648.326597255756 29043.085579873434 0.7057120065733133 0.699776568813422 0.7844070959676458 0.8767848516794262 0.6249806640543345 0.6833043842724653 0.6969986724515543 0.7169696235320954 0.8142497990517856 1.0 14.825907115056104 0.8981469853938175 2.821183048757316 0.9997379918126952 0.7237215747174107 0.6378620471311596 0.06348232193814546 0.2668339420097304 4.5826061308162656 0.06321891601793327 0.016710344045710566 7.90946275606226 -0.8981469853938175 -0.27601641709528446 TTNHS(ph)PPTPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTNHSPPTPR 10 0 A0A590UJL1;F8W6W8;Q9UQ26-3;A0A590UK62;Q9UQ26;Q9UQ26-1;Q9UQ26-8;A0A0J9YWD4;Q9UQ26-2;D6RDY0;Q9UQ26-5;Q9UQ26-4;D6RA03 A0A590UJL1;D6RA03 RIMS2 Regulating synaptic membrane exocytosis protein 2 1 T(0.002)T(0.002)NHS(0.993)PPT(0.003)PR;T(0.002)T(0.002)NHS(0.996)PPTPR 84.89200000000002 0.0094118 415770000.0 96658.0 128866.0 120700.0 117464.0 122022.0 125344.0 127876.0 109008.0 116971.0 120445.0 True False 96137.60406771339 133155.22690885785 137693.51085679294 132334.93035614488 137560.77841894267 116679.26430803843 121690.14934624141 117142.73049140803 88145.06438109755 112758.09698184756 0.852600448579672 1.1808928181032883 1.221140783166637 1.1736179830832805 1.2199636398713611 1.034775039940787 1.0792142879622364 1.0388853095868258 0.7817182689353798 1.0 16.782871509302243 1.4865548838357852 3.300045575222901 0.8912880809232613 1.1190932068170343 0.3486955334919939 0.11542450737452742 0.22727440723589165 4.981716302464488 0.08178197252201946 0.02978000543144564 30.658781043771086 -1.4865548838357852 0.227805125893773 TTNSS(ph)LEEIMDK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTNSSLEEIMDK 12 0 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 Q709C8-3 VPS13C Vacuolar protein sorting-associated protein 13C 1 TTNS(0.029)S(0.971)LEEIMDK;TTNS(0.001)S(0.999)LEEIMDK;TTNS(0.001)S(0.999)LEEIMDK 254.63 4.281300000000001e-21 273950000.0 1074050.0 911430.0 846420.0 772990.0 811520.0 1071640.0 1040450.0 940490.0 1410920.0 1088150.0 True False 1068267.4341381742 941766.39657893 965588.5787854735 870850.4547435497 914862.2617441139 997560.0491692154 990119.4585950214 1010674.1395114514 1063217.6713593823 1018703.3353879146 1.0486541047118354 0.9244756190184774 0.9478604273125155 0.8548616898480423 0.898065442571405 0.9792449033155978 0.9719409215618121 0.9921182197038692 1.043697055290898 1.0 19.958302543419915 2.015324828154743 1.439419765565578 1.0157979840577707 0.9332976591498309 0.30367559198185 0.048612235975209264 0.5143064916254929 1.9885718911769799 0.03398986467159879 0.01635206185426246 103.59166851476573 -2.015324828154743 -0.08250032490793979 TTPATGEQS(ph)PGAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TTPATGEQSPGAR 13 0 O00308-2;O00308;O00308-4 O00308-2 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 1 TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR 229.15 6.5501e-12 1071318000.0 694080.0 718921.0 714087.0 685350.0 715142.0 740599.0 728443.0 729475.0 830938.0 720431.0 True False 690343.1503995376 742849.8508880779 814624.242644529 772115.2397294806 806211.094721275 689403.134312524 693205.4291675073 783912.1286989932 626164.4638987479 674452.4767879897 1.0235608499611797 1.1014117027575072 1.2078304560820843 1.1448030310550563 1.1953564149705138 1.0221671030044033 1.0278047053349506 1.1622940913973565 0.9284041284580813 1.0 19.36335726613856 2.725536958581302 24.934443707293532 1.048302907383208 1.137385143477167 0.3295136417097908 0.0730988596171046 1074.9171648654883 2057979.8865466001 0.024276668004145765 0.023025382439436484 531.5412318887721 -2.725536958581302 0.08908223609395893 TTPDVIFVFGFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPDVIFVFGFR 12 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4;A0A2R8Y8A0 E7ETK0 RPS24 40S ribosomal protein S24 0 ; 188.87 2.0115e-05 344190000.0 381980.0 341390.0 323920.0 314380.0 310330.0 320170.0 349710.0 313250.0 486050.0 324920.0 False True 379923.46212196804 352752.9597753869 369525.12043688726 354180.4757658924 349848.6860299823 298037.4014991118 332793.1912780669 336626.3056512699 366269.490236319 304183.3274219926 1.2489950233035008 1.1596722370191375 1.2148105669323754 1.1643651832190622 1.150124462754128 0.9797953228568816 1.0940546745232487 1.1066560041414408 1.2041077114269134 1.0 18.214581554176426 3.1137452287726903 3.028057010275114 1.085624589981174 1.1973893655248324 0.44367857023640156 0.06265236306444563 0.25738994105360685 4.735356214478582 0.018967884735160766 0.02337367626189676 1299.4070800690354 -3.1137452287726903 0.11176477554365838 TTPES(ph)PPYSSGSYDSIK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTPESPPYSSGSYDSIK 17 0 A0A087WTU5;A0A087X0N3;Q96MY1-2;Q96MY1 A0A087WTU5 NOL4L Nucleolar protein 4-like 1 TTPES(0.996)PPYS(0.003)S(0.001)GSYDSIK;TTPES(1)PPYSSGSYDSIK;TTPES(1)PPYSSGSYDSIK 216.26 1.0112e-17 293310000.0 673380.0 571010.0 511630.0 448370.0 470980.0 635520.0 614970.0 585320.0 788750.0 613730.0 True False 669754.5968995511 590015.7226671663 583663.0568323196 505133.59602758824 530956.5112828307 591587.9982531641 585221.5516864628 628999.5505947355 594373.1312085107 574561.2259593117 1.165680116651277 1.0268979109790277 1.015841359391788 0.8791640876639314 0.924107801385872 1.0296343914705066 1.0185538550906428 1.09474764772811 1.0344817999441578 1.0 19.13210111087897 -0.031118783995406185 8.06353929561449 1.0000000050806679 1.0196575640489467 0.006728987433621492 0.07497784996942931 0.0 4.0451272306682975e-18 0.07729087299945128 0.018217633488703987 0.9308532427373345 0.031118783995406185 0.01965755896827881 TTPPEAAQNGQS(ph)PMAALILVADNAGGSHASK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 T(0.004)T(0.004)PPEAAQNGQS(0.993)PMAALILVADNAGGSHASK 159.75 1.3726e-12 44911000.0 17467.0 25643.0 26138.0 23911.0 23192.0 23817.0 22506.0 21836.0 24060.0 28190.0 True False 17372.959612766128 26496.511753479168 29818.00320443124 26938.13014834993 26145.36373024633 22170.58684918745 21417.298798730873 23465.513200961283 18130.73538748244 26390.890065326777 0.6582938116055167 1.0040022025741058 1.129859702746711 1.0207359464447217 0.9906965496626796 0.8400848472449173 0.8115413593749772 0.8891520196126711 0.6870073477098523 1.0 14.687752387704307 2.7344315102276227 22.915134497214563 0.840197137289386 0.9758534764121958 0.15053969583161297 0.13409361610988266 188.83535591651295 1047966.4745159586 0.042463176436596216 0.04145474859094022 542.53968415931 -2.7344315102276227 0.13565633912280972 TTPPESAPQNGPSPMAALMSVADTLGTAHS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 TTPPESAPQNGPSPMAALMS(0.005)VADT(0.115)LGT(0.22)AHS(0.66)PK;TTPPESAPQNGPSPMAALMSVADT(0.008)LGT(0.068)AHS(0.925)PK 270.28 4.7567e-62 1128510000.0 602950.0 462950.0 459190.0 396940.0 381030.0 567030.0 622850.0 511260.0 820300.0 599550.0 True False 599703.784194043 478359.0108908147 523839.9606489704 447192.56330082496 429551.9119582506 527832.5507450451 592720.3659819396 549412.8173256766 618148.0564568511 561286.2056994209 1.0684456131373294 0.8522550635192071 0.9332849361516223 0.7967282266336415 0.765299249467541 0.9403982235539013 1.0560037997786682 0.9788461069358566 1.101306339225947 1.0 19.09837707816285 2.437376428031392 5.438629605801021 1.0256468239680752 0.87686622836646 0.420472150373979 0.08305094931356437 0.18579144395197983 13.621418978718385 0.029203264050574773 0.024617941769348072 273.7640568949053 -2.437376428031392 -0.14878059560161516 TTPPPGAQCEVPAS(ph)PQRPSRPGALPEQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPPPGAQCEVPASPQRPSRPGALPEQTR 29 2 Q9H074;D6R9H8 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 TTPPPGAQCEVPAS(0.999)PQRPS(0.001)RPGALPEQTR;TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTR 222.25 8.9362e-35 1324230000.0 29813.8 25169.0 10771.0 20964.0 20746.0 18294.4 30166.4 28129.2 34478.1 27501.2 True False 29653.285813424573 26006.7349500182 12287.463176789683 23618.04025051266 23387.880128824178 17029.75118838538 28707.135985161076 30228.343741183366 25981.434237870246 25746.04987103813 1.1517605986921402 1.0101252456313043 0.47725624856385895 0.9173461703374046 0.9084065418180258 0.6614510293302213 1.1150112785827346 1.174096371777303 1.0091425429536243 1.0 14.65206348102519 2.2090423183828625 24.98720459881635 1.0991071235841803 0.8496441423284714 0.2605565467843006 0.17970719422467213 261.9108462786268 221705.6715013829 0.06869751820422768 0.05074390560243426 161.82377137583134 -2.2090423183828625 -0.24946298125570887 TTPPPGAQCEVPAS(ph)PQRPSRPGALPEQTRPLR ddPTM_BT-474_Trastuzumab_2h_R1 6 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 Q9H074;D6R9H8 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTRPLR;TTPPPGAQCEVPAS(0.947)PQRPS(0.053)RPGALPEQTRPLR;TTPPPGAQCEVPAS(0.999)PQRPS(0.001)RPGALPEQTRPLR;TTPPPGAQCEVPAS(0.411)PQRPS(0.345)RPGALPEQT(0.244)RPLR;TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTRPLR;TTPPPGAQCEVPAS(0.952)PQRPS(0.046)RPGALPEQT(0.002)RPLR 257.81 2.2550999999999995e-59 11648770000.0 265158.0 230942.0 226452.0 255037.0 216161.0 266372.0 210491.5 218694.0 356924.0 267297.0 True False 263730.41878982336 238628.7648626128 258334.47324393076 287324.6580504671 243687.82206337448 247958.33061224126 200309.22198938337 235014.05678563035 268964.8627365659 250237.87661552493 1.0539188645491462 0.9536076955658123 1.0323555999511846 1.148206106671548 0.9738246877701324 0.9908904837504434 0.8004752306028641 0.9391626078521876 1.0748367368454528 1.0 17.932940650309927 2.882709505085694 3.1142950314990068 0.9419935646800682 1.0401123460660278 0.17682200835153516 0.08004982728030755 0.3941398643298811 7.268642258191135 0.026435419565472584 0.02862277436767925 763.3250328630847 -2.882709505085694 0.09811878138595953 TTPPPGAQCEVPASPQRPSRPGALPEQT(ph)RPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 Q9H074;D6R9H8 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 TTPPPGAQCEVPAS(0.391)PQRPS(0.141)RPGALPEQT(0.468)RPLR;TTPPPGAQCEVPAS(0.164)PQRPS(0.028)RPGALPEQT(0.807)RPLR 108.51 4.5619e-06 3352650000.0 105328.0 113114.0 108027.0 94728.0 79627.0 94123.0 116437.0 110489.0 135084.0 111924.0 True False 104760.92575104091 116878.9311111431 123236.26261248361 106720.55508731924 89767.02646379462 87616.49855170977 110804.49747746508 118734.25023177377 101794.35823286283 104780.91449704261 0.9998092329495534 1.11546011668415 1.1761327261174257 1.0185113920754278 0.8567116148459293 0.836187572634544 1.0574874060732928 1.1331667680293531 0.9714971349647451 1.0 16.677016433029898 3.4941012215188425 24.148930318925018 0.987321262030393 1.0986925647059202 0.257484533120507 0.09086345111764643 796.0687341564177 1132167.6525483662 0.02839623664508019 0.04280848747157788 3119.6165920273897 -3.4941012215188425 0.1113713026755272 TTPPTQKPPS(ph)PPMSGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTPPTQKPPSPPMSGK 16 1 H7C3Q7;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9;H0Y6B5;E9PEZ7 H7C3Q7 ABI2 Abl interactor 2 1 TTPPTQKPPS(0.999)PPMSGK 113.17 0.00041322 171270000.0 286280.0 182290.0 181040.0 168830.0 165240.0 272130.0 291780.0 243210.0 397120.0 245360.0 True False 284738.70028869814 188357.41245336802 206528.85837211073 190203.86068947002 186282.33454578748 253318.2936251154 277665.48669215717 261359.56519535618 299255.0971353712 229700.91473673575 1.2396062968013957 0.8200115905905196 0.8991207484254778 0.8280500794150777 0.810977765409811 1.102817957496808 1.2088131517037903 1.1378255306249214 1.302803245160572 1.0 17.809397076400906 2.5755471570610156 5.005744339598295 1.1698199207684679 0.9088508243807706 0.42436905030681293 0.13527240464751772 0.19860270239147018 7.860941933481365 0.04316181474183611 0.040252678469193906 376.3112111045075 -2.5755471570610156 -0.2609690963876973 TTPQQGASGPGRS(ph)PVGQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TTPQQGASGPGRSPVGQAR 19 1 A0A2R8YF49;H0Y895;A0A2R8YFR7;Q12774 A0A2R8YF49;A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR 265.53 1.2159e-31 1390130000.0 84283.0 87740.0 95510.0 88474.0 107955.0 111102.0 104723.0 83781.0 129002.0 107149.0 True False 83829.22969272165 90660.37286005002 108956.97781219787 99674.79932855647 121702.42935058383 103421.78024597654 99657.14840929052 90033.16365129784 97211.185638238 100310.65908512581 0.8356961309723062 0.9037960042024412 1.086195413388069 0.9936610948191484 1.2132552059826913 1.0310148611246843 0.9934851322701338 0.897543336594905 0.9691012552887573 1.0 16.614115390378867 4.417596331681054 5.370212641905643 1.0171866179696933 0.850626518813762 0.3886391947673311 0.07860817341884413 0.1977632949350604 11.283505192752582 0.021495741603629555 0.063323082610005 26157.50588383659 -4.417596331681054 -0.1665600991559314 TTPSYVAFTDTER ddPTM_BT-474_Trastuzumab_2h_R1 8 TTPSYVAFTDTER 13 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;Q53FA3;P34931;P11142;E9PKE3;E9PNE6;P11142-2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65;P54652;P17066;P48741 A0A0G2JIW1;Q53FA3;P11142;P54652;P17066 HSPA1B;HSPA1A;HSPA1L;HSPA8;HSPA2;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 ;;;;;;; 249.83 2.7839e-17 6755980000.0 1750643.0 1988120.0 1927810.0 1730878.0 1646340.0 1734920.0 1889550.0 1663520.0 2425110.0 1869990.0 False True 1741217.7326027218 2054293.3723560828 2199228.891175093 1950006.9773290784 1855991.6403783106 1614989.0639623932 1798145.247718028 1787660.309583401 1827474.1353091232 1750645.6372210148 0.9946146127932213 1.1734490000026963 1.256238752387469 1.113878751855533 1.0601755152027925 0.9225105467523607 1.0271326243798913 1.021143440782878 1.0438858078726123 1.0 20.739455654716238 3.1759723112705487 3.1717425984716083 1.0068917212295703 1.1485104387276428 0.44919353221775804 0.06797773300773065 0.21762182594090723 4.435597585033471 0.020652435012640632 0.02618480599054434 1499.5892251602572 -3.1759723112705487 0.14161871749807253 TTQIPQWCVEYMR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTQIPQWCVEYMR 13 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 155.66 0.00010887 198210000.0 98855.0 126380.0 117950.0 116210.0 101240.0 113810.0 106850.0 81839.0 126880.0 107510.0 False True 98322.77566382305 130586.48190167683 134556.3347602212 130922.17408472026 114132.31390350727 105942.58257992279 101681.25729336157 87946.2417500215 95612.12410489492 100648.61975605813 0.9768914457260096 1.2974493064900348 1.336892001960336 1.300784594980399 1.1339679985689772 1.0525984642084076 1.0102598281010335 0.8737948117239623 0.949959615309478 1.0 16.61896786244625 2.613727450401617 1.5844320535809888 0.9361661046880155 1.2377862340322863 0.5910690486633339 0.10014604291395131 0.2475790745910865 1.251280801141842 0.043870667559753114 0.03819882872857915 410.8917773794132 -2.613727450401617 0.30162012934427074 TTQLIEMLHADMNVPFPEGFVIANDVDNKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTQLIEMLHADMNVPFPEGFVIANDVDNKR 30 1 Q08J23;Q08J23-2 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 242.5 7.292199999999998e-46 380550000.0 503560.0 392660.0 406920.0 392480.0 390370.0 486440.0 549140.0 492730.0 659570.0 510090.0 False True 500848.8889107755 405729.450732018 464210.7989879548 442167.92775811907 440081.3055957332 452813.54775659164 522576.0002814839 529500.0146322433 497027.8112851952 477535.6194899804 1.048819959117802 0.8496318058228763 0.9720966982185395 0.925937060423608 0.921567497029333 0.9482298896157892 1.0943183690456593 1.1088178410602378 1.040818299200451 1.0 18.865248822548512 2.255370306643655 11.0421816383965 1.0750838830392455 0.9394054441145868 0.5137358854401359 0.05476893029852395 0.26787998800902385 172.15150945976436 0.017926906416111346 0.014710416010908283 180.04053991094733 -2.255370306643655 -0.1356784389246587 TTQSMQDFPVVDS(ph)EEEAEEEFQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TTQSMQDFPVVDSEEEAEEEFQK 23 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK 257.04 8.666899999999997e-44 320750000.0 553440.0 456010.0 445540.0 436680.0 440020.0 587240.0 585870.0 565670.0 789740.0 581500.0 True False 550460.3405329647 471188.0171861339 508268.15929689695 491963.64322619035 496053.93879712763 546645.4810142689 557529.2298592573 607883.1678140584 595119.1589738309 544388.1721528028 1.011154115189809 0.8655368380301206 0.9336502615163956 0.9037000956150503 0.9112136599799079 1.0041465060722012 1.0241391315584387 1.1166355165472504 1.09318899530901 1.0 19.054276196381828 2.381839220101147 1.8859304893016147 1.0787967619212528 0.9209741947205898 0.6465737606030874 0.04634967484971373 0.1793025416443884 1.3018176000396422 0.019782406992862284 0.014596978034094172 240.90134241721702 -2.381839220101147 -0.157822567200663 TTQVPQFILDDFIQNDR ddPTM_BT-474_Trastuzumab_2h_R1 5 TTQVPQFILDDFIQNDR 17 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;; 238.07 7.1771e-20 574866000.0 390519.0 407626.0 383753.0 412716.0 408260.0 431734.0 443098.0 431632.0 505132.0 439135.0 False True 388416.4890947394 421193.58499487996 437782.08675912855 464965.80328327516 460249.4910533957 401889.2447725196 421663.65694126254 463842.5716228857 380648.98702201934 411109.02833761135 0.9448016519252007 1.0245301269545142 1.064880741075851 1.1310036297753974 1.1195314608255917 0.9775733858184203 1.0256735509952934 1.128271430813649 0.9259076322435381 1.0 18.649161529614936 4.6718396318277575 2.7534023517984467 1.056578486285338 0.9322127377060484 0.16688126150106963 0.06499474622400717 0.5771298358605855 6.478845820955251 0.015909167747412092 0.15043538013430047 46972.062689831895 -4.6718396318277575 -0.12436574857928961 TTS(ph)FAESCKPVQQPSAFGSMK ddPTM_BT-474_Trastuzumab_2h_R1 3 TTSFAESCKPVQQPSAFGSMK 21 1 A0A3B3ITW1;P49841;P49841-2 A0A3B3ITW1 GSK3B Glycogen synthase kinase-3 beta 1 T(0.119)T(0.119)S(0.761)FAESCKPVQQPSAFGSMK;T(0.002)T(0.016)S(0.982)FAESCKPVQQPSAFGSMK;T(0.002)T(0.037)S(0.96)FAES(0.001)CKPVQQPSAFGSMK 246.21 1.6984999999999994e-30 4117320000.0 4358390.0 1872600.0 1943640.0 1918050.0 2078940.0 2806770.0 2214410.0 2387850.0 4784830.0 2765190.0 True False 4334924.912502653 1934928.3589893973 2217287.6175782643 2160874.933337905 2343680.6861572205 2612744.5963258953 2107290.5284323157 2566043.492256612 3605672.759937138 2588713.2068017335 1.6745481504528283 0.7474479420530075 0.8565211518033113 0.8347293657946729 0.9053458220089037 1.0092831409292542 0.8140301223385811 0.991242863641458 1.3928436531568604 1.0 21.303803712992792 1.4482048101570673 24.971369854870805 1.1949628249159687 0.9526051877113261 0.09398076746690931 0.2623421811915332 36.63885062512487 31645.52798283196 0.1335997311164968 0.061717782035998286 28.06756972310049 -1.4482048101570673 -0.24235763720464265 TTS(ph)LGDSLNAHSAAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSLGDSLNAHSAAEK 16 0 Q13796 Q13796 SHROOM2 Protein Shroom2 1 T(0.209)T(0.209)S(0.582)LGDSLNAHSAAEK 134.83 1.6861e-05 270120000.0 210600.0 129800.0 137170.0 158080.0 135640.0 158600.0 147290.0 147650.0 229800.0 188750.0 True False 209466.15299985974 134120.314534243 156482.34369698662 178092.9117916926 152912.94999873263 147636.3553042418 140165.01999755928 158668.39275150836 173168.86916223876 176703.81340299483 1.1854082204901055 0.7590119983905785 0.8855629127828121 1.0078611681431557 0.8653630448257266 0.8355018064468076 0.7932201195788326 0.8979341741179379 0.9799950879798265 1.0 17.43097364912105 4.754565302158951 24.369225095644055 0.8853619288985186 1.185408541985751 0.5448615796248721 0.08037531075254273 1630.88239785443 2483172.888260049 0.018915726286206525 0.475084144061738 56828.38344401623 -4.754565302158951 0.30004661308723235 TTS(ph)PEPR ddPTM_BT-474_Trastuzumab_2h_R1 5 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 T(0.023)T(0.05)S(0.926)PEPR;T(0.113)T(0.07)S(0.817)PEPR;T(0.01)T(0.408)S(0.581)PEPR;T(0.001)T(0.122)S(0.877)PEPR;T(0.007)T(0.112)S(0.882)PEPR 131.41 0.0036388000000000006 3845750000.0 4348260.0 4651880.0 4090970.0 4213580.0 4255900.0 3192610.0 4679550.0 4347450.0 5382130.0 4546090.0 True False 4324849.451297099 4806715.013679161 4666943.016651311 4747018.795971911 4797863.638304391 2971912.3852955573 4453182.2888830155 4671878.794903784 4055776.1783470786 4255954.644096533 1.0161878621747369 1.129409360681649 1.0965678459766632 1.1153828442595217 1.1273295980631617 0.698295126198753 1.0463415758107428 1.097727580669635 0.952965084807207 1.0 22.02105134537811 TTS(ph)PLEEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 TTSPLEEEER 10 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 T(0.032)T(0.16)S(0.809)PLEEEER;TT(0.004)S(0.996)PLEEEER;T(0.002)T(0.001)S(0.998)PLEEEER 326.85 5.750799999999998e-53 5758800000.0 2492921.0 2695014.0 2543013.0 2525141.0 2421229.0 2725616.0 2803057.0 2518517.0 3067640.0 2557346.0 True False 2479499.3903255616 2784715.911819635 2901047.1261347607 2844823.5916914623 2729558.1614013677 2537200.5813299282 2667462.4241924025 2706461.5273101917 2311661.226270016 2394133.9888259345 1.0356560668275252 1.1631412129883503 1.2117313148197744 1.1882474435303192 1.1401025064348729 1.059757136890301 1.1141658890614163 1.1304553295437823 0.965552152494037 1.0 21.191072464966243 1.2431929927703813 24.944027934507066 0.9827760419087648 1.1331150821580558 0.5723708866733053 0.05099961403931612 74.42947611870743 400799.57161557174 0.038723527757164505 0.013089258603997856 17.50624462280651 -1.2431929927703813 0.150339040249291 TTS(ph)PSS(ph)DTDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 TTSPSSDTDLLDR 13 0 K7ENU0;K7ERZ4;K7EJ43;Q96QT6;C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3 K7ENU0;Q96QT6 PHF12 PHD finger protein 12 2 TTS(1)PS(0.001)S(0.999)DTDLLDR;TTS(1)PS(0.008)S(0.992)DTDLLDR 367.69 5.3736e-91 496750000.0 600580.0 666450.0 564440.0 631730.0 645640.0 685550.0 647970.0 590570.0 765130.0 640570.0 True False 597346.5440107115 688632.3853724683 643908.2457995703 711706.9532272642 727858.4269919044 638159.5421111162 616625.2156142202 634641.3322536958 576573.9637167265 599688.2741804316 0.9960950876137765 1.1483172425100237 1.0737382628992909 1.1867948463723486 1.213727962226104 1.0641521096660789 1.0282429091296401 1.058285378551103 0.9614561240249454 1.0 19.19385323822412 2.4978736888914 9.183803860774141 1.0246543217039212 1.1271743752102934 0.42125608746597454 0.06105490106709604 0.32375629040868703 135.28163924756572 0.020379772654754314 0.018574366987021217 314.68329495674436 -2.4978736888914 0.10252005350637217 TTS(ph)PSSDTDLLDR ddPTM_BT-474_Trastuzumab_2h_R1 4 TTSPSSDTDLLDR 13 0 K7ENU0;K7ERZ4;K7EJ43;Q96QT6;C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3 K7ENU0;Q96QT6 PHF12 PHD finger protein 12 1 T(0.001)T(0.005)S(0.994)PSSDTDLLDR;TT(0.018)S(0.982)PSSDTDLLDR;T(0.001)T(0.007)S(0.991)PS(0.001)SDTDLLDR;TTS(0.998)PS(0.002)SDTDLLDR 278.84 2.6375e-32 1918110000.0 1370530.0 1496120.0 1381640.0 1393960.0 1375680.0 1492380.0 1451460.0 1381800.0 1634480.0 1504070.0 True False 1363151.2187601968 1545917.4497763608 1576162.902569838 1570435.1930740618 1550864.693705815 1389215.283284642 1381247.3346843463 1484916.9326382277 1231684.3049099029 1408078.9649008864 0.9680928788366269 1.0978911611574118 1.1193711019472428 1.1153033545846653 1.1014046316748856 0.9866032501823702 0.9809445131378489 1.0545693598531598 0.8747267274151774 1.0 20.425296811734384 2.733347213040884 23.803970460458316 0.9887984204773477 1.0854863908978423 0.4250131879109502 0.05809980870669313 231.3615599187754 1056373.7766181445 0.01851196414692551 0.017965216962416708 541.1868221721397 -2.733347213040884 0.0966879704204946 TTS(ph)SYQNLVWSDHSQELHS(ph)PTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSSYQNLVWSDHSQELHSPTLK 23 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 2 T(0.054)T(0.065)S(0.44)S(0.44)Y(0.001)QNLVWSDHSQELHS(0.991)PT(0.009)LK 150.77 3.7998e-08 180590000.0 132260.0 93156.0 98729.0 100570.0 84018.0 118020.0 110000.0 60063.0 151600.0 113520.0 True False 131547.9268554674 96256.64114600875 112629.18503214819 113302.15168832547 94717.19428629841 109861.55518919695 104678.87975919298 64545.20605373406 114240.21133592418 106275.05641063822 1.2378062294051095 0.9057312637321111 1.0597894636438312 1.0661217741492897 0.8912457681539009 1.033747324157616 0.9849807028539439 0.607341066038456 1.0749484892721133 1.0 16.697443499194435 2.7412535358397587 0.9899424101907537 0.8635201909722027 1.0586168605588426 0.11102193472501665 0.1474185863370871 0.8497445746446278 1.7627619501452636 0.08255106058428476 0.07667971087478229 551.1293451217605 -2.7412535358397587 0.19509666958663996 TTSIS(ph)PALAR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 TTSIS(1)PALAR 147.58 2.7947e-05 257360000.0 187890.0 211540.0 203000.0 198600.0 202360.0 226100.0 245580.0 195260.0 233050.0 223600.0 True False 186878.42111654166 218580.9810213696 231580.63549236907 223742.7396370833 228129.34651831005 210470.23918215052 233700.35719329646 209831.2927101894 175617.95021000766 209329.65656640872 0.8927469914290691 1.044195001351975 1.1062963523226406 1.0688535170175568 1.0898090134970304 1.0054487387714217 1.1164225892624835 1.002396393095985 0.838953988128738 1.0 17.675417192864437 1.4469822715215892 6.921501914333362 0.9185366559606454 1.0497376339890163 0.3376591164583731 0.07017986682124157 0.17051645563507964 19.38407999068532 0.04107376415719396 0.016904283524327313 27.988670638259944 -1.4469822715215892 0.13120097802837094 TTSRS(ph)PVLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TTSRSPVLSR 10 1 O95819-3;O95819-6;E7EN19;O95819;H7C360;O95819-2;A0A0D9SEY1;H7C0P6;A0A0D9SG62;G5E948;E7ENQ1;G3XAA2;C9J840;E7EX83;O95819-4;O95819-5;H7C3Z6 O95819-3 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 T(0.118)T(0.118)S(0.097)RS(0.667)PVLSR;T(0.016)T(0.016)S(0.016)RS(0.952)PVLSR;T(0.071)T(0.071)S(0.071)RS(0.786)PVLSR;T(0.001)T(0.001)S(0.004)RS(0.993)PVLSR 116.71 0.00063842 1618330000.0 808980.0 1020740.0 1021630.0 984190.0 968350.0 1147480.0 1190850.0 1001110.0 1255790.0 1090790.0 True False 804624.5415661284 1054714.7138496402 1165466.6238328526 1108788.3530887251 1091663.6326398773 1068157.4084773727 1133244.0360112262 1075817.9117335766 946317.3812238808 1021174.848327698 0.7879400309200741 1.0328443905339697 1.141299774217364 1.0857967711450252 1.0690271449865942 1.0460083405174097 1.1097453466143 1.0535099973284334 0.9266947602299395 1.0 19.961798478848742 4.729198530408267 4.426353677997438 1.0612525824876264 0.770989143144123 0.6637060418145637 0.05626705635142549 0.10604964090403776 5.137490389880157 0.01327974275946646 0.09504791573584434 53604.164392318744 -4.729198530408267 -0.2902634393435034 TTSSANNPNLMYQDECDRR ddPTM_BT-474_Trastuzumab_2h_R1 7 TTSSANNPNLMYQDECDRR 19 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ;;;;;; 302.74 7.347599999999997e-50 7868790000.0 1256106.0 1344592.0 1306691.0 1348738.0 1402870.0 1495159.0 1447304.0 1370910.0 1748267.0 1547489.0 False True 1249343.2648624969 1389345.9318969706 1490661.7348382233 1519488.0925107761 1581517.1790380592 1391802.1775557054 1377292.376281809 1473214.2655399267 1317430.0234275886 1448726.9271480106 0.8623731922495401 0.9590116024363967 1.0289459710483648 1.0488436875416316 1.0916599597906707 0.9607070535339822 0.950691500566757 1.0169026597994713 0.9093708405221022 1.0 20.466354253952495 4.6509082703309295 2.9455830945291055 1.0028320244512328 0.8515324120451 0.41841441081712794 0.04929360668293514 0.31449373208096565 4.248371505032045 0.012582786262213633 0.10010630301382417 44761.875023177425 -4.6509082703309295 -0.15129961240613277 TTSSYQNLVWSDHS(ph)QELHS(ph)PTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSSYQNLVWSDHSQELHSPTLK 23 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 2 TTSSYQNLVWS(0.079)DHS(0.92)QELHS(0.953)PT(0.047)LK 119.47 8.6272e-05 134110000.0 76323.0 58330.0 65767.0 69909.0 63921.0 82178.0 69465.0 49066.0 90193.0 65705.0 True False 75912.08544828239 60271.4787887704 75026.42194298832 78759.4722320688 72060.96046054998 76497.22828620415 66104.7125679304 52727.5540720996 67966.14367428105 61511.65064711945 1.2341090614487893 0.9798384233669215 1.2197107564776717 1.2803992642612827 1.1715010035082605 1.2436217770362574 1.0746697881212857 0.8571962143332402 1.104931227812269 1.0 15.908572070309074 2.004434193227805 6.8738498150909315 0.9697097115325425 1.1821013130351055 0.47363865112513726 0.0951225953209005 0.1080508992139733 28.23622990954283 0.03748523891567644 0.0261094076568401 101.02624082186094 -2.004434193227805 0.21239160150256298 TTSSYQNLVWSDHSQELHS(ph)PTLK ddPTM_BT-474_Trastuzumab_2h_R1 4 TTSSYQNLVWSDHSQELHSPTLK 23 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 1 TTSSYQNLVWSDHSQELHS(1)PTLK;TTSSYQNLVWSDHSQELHS(1)PTLK;TTSSYQNLVWSDHSQELHS(1)PTLK;TTSSYQNLVWSDHS(0.02)QELHS(0.979)PT(0.001)LK 351.52 1.9919999999999996e-101 10039180000.0 2581350.0 2959850.0 3461050.0 3018260.0 3225160.0 3819990.0 3482940.0 1438340.0 3264940.0 2870390.0 True False 2567452.2984149493 3058366.81798289 3948335.756014109 3400371.40653083 3635865.008979012 3555923.082589219 3314456.886077122 1545676.234542528 2460339.2849545674 2687199.2527354863 0.9554380069886377 1.138124318421705 1.4693126131211984 1.265396082210635 1.3530314156189993 1.3232822534352071 1.2334243107216953 0.5751997113608442 0.9155775413564952 1.0 21.35767186882027 1.759101750876476 24.999999999992895 0.7951786581649368 1.2601223198355145 0.5732784105390878 0.1642184216400028 5.9988204253497655 7307.390149712573 0.07562578236086066 0.04193928136796102 57.425098774113366 -1.759101750876476 0.46494366167057766 TTSSYQNLVWSDHSQELHSPT(ph)LK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTSSYQNLVWSDHSQELHSPTLK 23 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 1 TTSSYQNLVWSDHSQELHS(0.215)PT(0.785)LK 129.35 7.2453e-05 129300000.0 62027.0 85565.0 76945.0 83517.0 82315.0 92220.0 89040.0 43388.0 76731.0 79677.0 True False 61693.05352384759 88412.97929986517 87778.18718207069 94090.24363680911 92797.32733077045 85845.04846252949 84732.79503416856 46625.83287979981 57821.67319272291 74591.94564508833 0.8270739285630889 1.1852885527418457 1.1767783562011247 1.2613995093316712 1.2440663201400337 1.1508621704410809 1.1359509971402386 0.6250786526154918 0.775173146278298 1.0 16.186732237841998 1.7543021281645155 24.999999573716625 0.770621749500376 1.1524099301648099 0.5423797660217656 0.1420877004736495 3.595987991635624 5717.943514733965 0.06404860611324494 0.035518468676743076 56.79395698280366 -1.7543021281645155 0.3817881806644339 TTTS(ph)PFFSEDTFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTTSPFFSEDTFR 13 0 A0A494C0H4;H0Y9M2;Q17R98-2;Q17R98;H0Y9K9;G5E9Z1;A0A590UJE4;Q17R98-3;A0A5F9ZGT0;A0A5F9ZHK5 A0A494C0H4 ZNF827 Zinc finger protein 827 1 TTT(0.002)S(0.995)PFFS(0.002)EDTFR 213.73 3.7222e-09 150030000.0 540920.0 605590.0 555770.0 562290.0 485650.0 590360.0 588180.0 526390.0 698090.0 618210.0 True False 538007.7468218611 625746.6970631152 634017.5851605609 633475.8563471078 547494.6488269289 549549.8027579582 559727.4863342015 565671.8947542597 526055.0734267508 578755.3085237907 0.9295944916585511 1.0811938790836904 1.095484699358915 1.09454867543745 0.945986396605852 0.9495373859458397 0.9671228550142845 0.9773938768649876 0.9089421136689695 1.0 19.142593995718236 3.228926430979757 24.990536687231334 0.9586660897462387 1.0556531311513682 0.452148418901815 0.0494872283218265 171.34627611147675 444462.08759227203 0.014185386773734345 0.01715652237725469 1694.0508057470145 -3.228926430979757 0.09698704140512948 TTVSMALEEYLVCHGIPCYTLDGDNIR ddPTM_BT-474_Trastuzumab_2h_R1 1 TTVSMALEEYLVCHGIPCYTLDGDNIR 27 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 205.38 3.1280000000000003e-25 239650000.0 48810.0 58807.0 46195.0 54540.0 47680.0 50193.0 59311.0 47999.0 59251.0 58126.0 False True 48547.21238330083 60764.35544541782 52698.85446586204 61444.758407887806 53751.765378498814 46723.27605161292 56441.900339977234 51580.92911398336 44649.384972723274 54416.34891582772 0.8921438749665953 1.1166562376209643 0.9684378962538935 1.1291598872782105 0.9877870612312322 0.8586257068419897 1.0372232144292275 0.9478939719709927 0.8205141627893452 1.0 15.731752541250339 2.9982437216303546 24.97073891796032 0.9382376803020256 1.0325771744740537 0.20741527825302197 0.08610210500151988 100.97294508576475 1435670.9678907252 0.023699324921270463 0.027940384657571912 995.9641854843585 -2.9982437216303546 0.09433949417202814 TTWDRPEPLPPGWER ddPTM_BT-474_Trastuzumab_2h_R1 2 TTWDRPEPLPPGWER 15 1 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 ; 162.81 1.4353999999999996e-06 729660000.0 294080.0 338840.0 293970.0 326950.0 315380.0 333650.0 337650.0 294340.0 346970.0 331100.0 False True 292496.7059553592 350118.0845668943 335358.420766954 368341.8364770614 355541.77359628706 310585.5608276186 321316.57955174067 316305.1454282351 261463.89265979943 309968.9145310287 0.943632384550224 1.1295264400838703 1.0819098465868382 1.1883186319968526 1.1470239657231707 1.0019893810884966 1.0366090420321037 1.0204415042933994 0.8435164960182683 1.0 18.241764015418248 1.855520271228658 1.248420160537408 0.9363441166033339 1.0963879395086134 0.3787250898008253 0.07664317103593128 0.46126260900837657 1.3343728339353185 0.06007076269796313 0.025215062461228392 71.70018417414813 -1.855520271228658 0.1600438229052794 TTWGDGGENS(ph)PCNVVSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TTWGDGGENSPCNVVSK 17 0 H3BV99;H3BP15;H3BQY9;H3BM38;O00161 H3BV99;H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 TTWGDGGENS(1)PCNVVSK 159.69 3.338e-09 252170000.0 202470.0 209180.0 223530.0 169950.0 218040.0 314900.0 237690.0 196040.0 285860.0 213150.0 True False 201379.92401653176 216142.4298480199 255001.08104241 191465.65257463412 245806.1015756689 293131.7041948658 226192.0266360234 210669.5002709495 215413.6333277526 199546.584513104 1.0091875263508074 1.0831677744593322 1.2779025091540184 0.959503531678142 1.2318231463366744 1.4689888324077838 1.1335299333132391 1.055740947834239 1.0795155118959536 1.0 17.606366059985184 1.7998599217856335 4.4935302484815 1.0512442335014642 1.1749942232420572 0.1427851011371345 0.13669830877109695 0.4531630075925671 16.442764286177784 0.07070079888553607 0.03845361481231811 63.07538670479561 -1.7998599217856335 0.12374998974059293 TTYLVLDEADR ddPTM_BT-474_Trastuzumab_2h_R1 4 TTYLVLDEADR 11 0 P17844;P17844-2;J3KTA4;J3QSF1;J3KRZ1 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;; 241.13 2.4052e-15 1463080000.0 1320510.0 1506030.0 1508690.0 1459650.0 1405220.0 1479310.0 1560920.0 1375280.0 1786450.0 1566260.0 False True 1313400.5208824521 1556157.2981356396 1721100.4382314398 1644441.5403387134 1584166.4376085165 1377048.7816211714 1485412.336306542 1477910.3771303382 1346203.3347035737 1466299.9458573486 0.8957243192930108 1.0612816992404315 1.1737710576161202 1.1214905551791485 1.0803836159744595 0.9391317141568931 1.0130344343960391 1.0079181829787227 0.9180954677840119 1.0 20.48374882022995 2.7543278028223983 23.526727869739727 0.9818825851683562 1.0752498515294069 0.2779213931782921 0.0722277511460456 517.6949801538753 772467.2369311947 0.023006718735566766 0.024309076978888726 567.9731463200006 -2.7543278028223983 0.09336726636105064 TVAISDAAQLPHDYCT(ph)TPGGTLFSTT(ph)PGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.001)CT(0.791)T(0.206)PGGT(0.01)LFS(0.15)T(0.132)T(0.662)PGGT(0.047)R 118.81 4.3491e-05 310720000.0 66198.0 64578.0 76210.0 69411.0 76392.0 82929.0 66993.0 66485.0 79068.0 83030.0 True False 65841.5973232893 66727.43969177455 86939.70557080515 78198.42548312987 86120.06838914184 77196.31342386798 63752.29265188732 71446.44830398934 59582.75085691862 77730.95431444072 0.8470447571882874 0.858441019800757 1.1184695509991138 1.006013964099786 1.1079250106819107 0.9931219049696728 0.8201660871677158 0.9191505357694565 0.7665254001114127 1.0 16.24620160807807 2.2559085383774677 24.275900853538506 0.8732489785584581 0.9947226935438785 0.22811770621329674 0.10050874008273965 246.88558009975245 345479.58308732335 0.035800820852891074 0.029879379376334027 180.26380686058917 -2.2559085383774677 0.12147371498542048 TVAISDAAQLPHDYCT(ph)TPGGTLFSTTPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDYCT(0.638)T(0.359)PGGT(0.003)LFSTTPGGTR 150.8 3.8486e-08 376650000.0 30894.0 32057.0 27534.0 36033.0 31973.0 47162.0 32658.0 28824.0 27852.0 30736.0 True False 30727.67013664609 33123.9978661343 31410.547870181737 40594.774105453274 36044.57203118167 43901.80194740637 31078.20777432476 30974.9932453063 20988.24779767916 28774.4021655865 1.067882139125575 1.151161983332179 1.0916142649784746 1.4107947012015998 1.2526610222432395 1.525724207744336 1.0800644126498502 1.0764773866388666 0.7294069109376877 1.0 14.81249833391205 1.6117885408147554 2.334003078372913 0.875477277989257 1.2425305712826027 0.4648105858300391 0.1531520044768294 0.2282616481497199 2.7595503936696257 0.112069250835742 0.04254726311044695 40.90614380867897 -1.6117885408147554 0.3670532932933457 TVAISDAAQLPHDYCTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_BT-474_Trastuzumab_2h_R1 8 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.001)CT(0.468)T(0.531)PGGT(0.002)LFS(0.153)T(0.137)T(0.704)PGGT(0.003)R;TVAISDAAQLPHDYCT(0.045)T(0.955)PGGT(0.001)LFSTT(0.991)PGGT(0.008)R;TVAISDAAQLPHDYCT(0.108)T(0.891)PGGT(0.001)LFS(0.116)T(0.362)T(0.521)PGGTR;TVAISDAAQLPHDYCT(0.023)T(0.977)PGGTLFS(0.057)T(0.176)T(0.765)PGGT(0.002)R;TVAISDAAQLPHDYCT(0.016)T(0.945)PGGT(0.051)LFS(0.027)T(0.067)T(0.887)PGGT(0.007)R;TVAISDAAQLPHDYCT(0.258)T(0.739)PGGT(0.145)LFS(0.1)T(0.066)T(0.659)PGGT(0.032)R;TVAISDAAQLPHDYCT(0.631)T(0.368)PGGT(0.009)LFS(0.249)T(0.162)T(0.58)PGGTR;TVAISDAAQLPHDYCT(0.128)T(0.86)PGGT(0.014)LFS(0.272)T(0.18)T(0.544)PGGT(0.002)R 218.97 1.1991e-34 39546180000.0 5419800.0 5856483.0 5766748.0 6145868.0 5649771.0 6436660.0 6375710.0 5230417.0 6785140.0 6220760.0 True False 5390620.398996387 6051412.496336271 6578655.992927823 6923934.258649949 6369235.848033702 5991708.844467848 6067292.549722582 5620737.276059363 5113033.163217891 5823745.770939418 0.9256276992542611 1.0390928337794059 1.1296262322705464 1.1889142368130987 1.0936665332845208 1.0288410724188146 1.041819610326822 0.9651412505173096 0.8779629750893327 1.0 22.47351594700872 1.83792672185385 1.787123050443467 0.9347480270162077 1.0771587112210828 0.3675000652794326 0.07049195503933174 0.367935569837079 2.2361964283370552 0.05115377910319914 0.022417331330875902 68.85361104182367 -1.83792672185385 0.14241068420487502 TVAISDAAQLPHDYCTT(ph)PGGTLFSTTPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDYCT(0.033)T(0.967)PGGTLFSTTPGGTR 202.52 3.2995999999999997e-25 334670000.0 228000.0 275750.0 238530.0 278340.0 276050.0 319420.0 289310.0 252610.0 278690.0 290840.0 True False 226772.47333318132 284928.1720556053 272112.9506600731 313577.8154611571 311203.3312234609 297339.2472338016 275314.97002847394 271461.0409275891 210010.58375467488 272278.3421993485 0.8328700384371737 1.0464591849431608 0.9993925644693609 1.1516810809416902 1.1429602836189354 1.092041492657924 1.0111526601954341 0.9969982876156893 0.7713084414217408 1.0 18.054722705278873 1.4632806207605074 4.274477504268865 0.8826276345516814 1.0463542429072206 0.26436493483206236 0.09937372512625227 0.23858772130185327 8.62399100520115 0.06696974096673562 0.02553762667845549 29.058997043027713 -1.4632806207605074 0.1637266083555392 TVAISDAAQLPHDYCTTPGGTLFS(ph)TTPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDYCTTPGGT(0.001)LFS(0.847)T(0.1)T(0.053)PGGTR 167.6 1.32e-12 408820000.0 352930.0 395350.0 353400.0 450750.0 348620.0 403800.0 396280.0 351550.0 405680.0 449660.0 True False 351029.86409420945 408508.9857558779 403155.64819213457 507814.90378356085 393014.69056737155 375886.25644295575 377110.42246339103 377784.44613472855 305705.5998334945 420962.31382670574 0.8338747972549276 0.9704170001404107 0.9577000955912137 1.2063191575686014 0.9336101538275962 0.8929213948536351 0.8958294129356034 0.8974305626090988 0.7262065743000025 1.0 18.68333155787352 3.0041132563435493 24.999457114503393 0.8825507777983438 0.9983112068623938 0.1923160822190113 0.10558271596133456 190.96306873981757 1160613.887065543 0.03066575441720904 0.03650699020788639 1009.516115755911 -3.0041132563435493 0.11576042906405004 TVAISDAAQLPHDYCTTPGGTLFST(ph)TPGGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDYCTTPGGT(0.002)LFS(0.031)T(0.838)T(0.113)PGGT(0.016)R 194.65 6.654899999999999e-19 4088900000.0 915530.0 1117800.0 942960.0 1019000.0 793700.0 993340.0 1043700.0 875380.0 988660.0 1119100.0 True False 910600.8882049448 1155005.2972756303 1075720.5716447495 1148005.2955195748 894772.9903715282 924672.7438708413 993212.2436788146 940705.300689571 745017.9903652692 1047678.0798902867 0.8691609624020227 1.1024429349486657 1.0267663247830856 1.0957614915831726 0.854053365767879 0.8825924314152621 0.9480128130416017 0.8978953733460588 0.711113465734902 1.0 19.998764057295293 3.2295163886613145 24.9964697440943 0.8831978239171911 1.029400317843748 0.3625523057141413 0.09162160650800408 197.14583941268003 544871.7041066027 0.02542181255877257 0.030793702624441185 1696.3536151395472 -3.2295163886613145 0.14620249392655693 TVAISDAAQLPHDYCTTPGGTLFSTT(ph)PGGTR ddPTM_BT-474_Trastuzumab_2h_R1 3 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDYCTTPGGTLFST(0.008)T(0.991)PGGTR;TVAISDAAQLPHDYCTTPGGTLFST(0.011)T(0.989)PGGTR;TVAISDAAQLPHDYCTTPGGTLFS(0.076)T(0.227)T(0.68)PGGT(0.016)R 355.66 3.9936e-120 13050700000.0 3919540.0 4511030.0 4115130.0 4707900.0 3695530.0 4264810.0 4387820.0 3994090.0 4303140.0 4811610.0 True False 3898437.63214183 4661176.906574779 4694504.534648827 5303919.657288138 4166133.840377594 3969993.7229828704 4175564.383499832 4292149.277378063 3242688.806121826 4504528.930373429 0.8654484614040754 1.0347756621441797 1.0421743554568865 1.17746377907011 0.9248766973802559 0.8813338274317076 0.9269702666009239 0.9528519726972293 0.7198730114167575 1.0 22.102944810690698 3.02656480153519 24.858581323636805 0.9010941089699812 1.0336798911945246 0.29766358759341616 0.0976787383296301 257.0762660567607 240562.75416949 0.027843002161782787 0.03327797137330382 1063.0771943053928 -3.02656480153519 0.13258578222454342 TVANLLSGKS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVANLLSGKSPR 12 1 Q13428-4;Q13428;Q13428-2;Q13428-3;Q13428-8;Q13428-6 Q13428-4;Q13428-3;Q13428-6 TCOF1 Treacle protein 1 TVANLLSGKS(1)PR;TVANLLSGKS(1)PR 179.85 1.2231e-05 10333400000.0 15294400.0 14075300.0 11714000.0 12211000.0 11069700.0 16727100.0 18319900.0 14670500.0 24997000.0 18337400.0 True False 15212056.649767604 14543787.85180149 13363229.380086757 13756911.347977953 12479360.679747663 15570794.948358038 17433696.448185798 15765287.20528953 18836824.292639174 17167091.432562 0.8861172965452873 0.847189980255787 0.7784212854333497 0.8013536481715403 0.7269350622830145 0.9070141560977443 1.0155300049907179 0.9183435218027922 1.0972635851935917 1.0 24.033142292877653 2.481079329560316 4.6579097051038865 0.9908737789228714 0.808100217914874 0.7284625992243609 0.05709322000340179 0.10834851334700411 6.250319450604158 0.019960679239509074 0.01749478355891527 302.7466383880333 -2.481079329560316 -0.18277356100799746 TVART(ph)PLGQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVARTPLGQR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.201)VART(0.799)PLGQR;T(0.042)VART(0.958)PLGQR 104.41 0.0043417 4480300000.0 1895330.0 1945250.0 2020350.0 2392800.0 2154110.0 2247600.0 2495000.0 2146000.0 2993900.0 2473200.0 True False 1885125.7538709594 2009996.4703215451 2304797.718802992 2695728.234660686 2428423.140089727 2092228.702281298 2374307.318174423 2306145.4171671947 2256093.4612046387 2315358.2585869543 0.8141831817515089 0.8681146698862192 0.9954389176081945 1.1642812617283118 1.048832564499878 0.9036306560860994 1.0254600165520151 0.9960209866505142 0.9744036167351119 1.0 21.14280401028166 4.282679332772792 3.6515709571228396 1.01663181453041 0.8279108089018197 0.5595722235550968 0.06208810363024555 0.16518194992522559 4.4629893464075625 0.01648136658963261 0.049309038974497635 19172.52588437457 -4.282679332772792 -0.1887210056285904 TVAS(ph)DLQK ddPTM_BT-474_Trastuzumab_2h_R1 6 TVASDLQK 8 0 Q7L8J4;Q7L8J4-2 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK 175.64 0.00027795 3356390000.0 6695650.0 4579680.0 4291900.0 3828510.0 4291750.0 6450370.0 5886050.0 5364240.0 9216100.0 5422260.0 True False 6659601.3643566575 4732111.880324984 4896162.214136451 4313198.9734540265 4838278.923304791 6004471.104437718 5601319.274605437 5764546.827858786 6944915.644412997 5076206.724569656 1.31192477487631 0.9322141782407722 0.9645316827697814 0.8496893856937406 0.9531288195744163 1.1828657559147686 1.1034458560354037 1.1356012748569624 1.368130972838141 1.0 22.2753193923327 2.736329596362185 24.9444779654531 1.1591279795018838 0.9878278735900955 0.22755703758921753 0.14219075953676152 271.8936765073208 3039958.425039297 0.044440978909641125 0.043766838820784734 544.9160456411377 -2.736329596362185 -0.17130010591178835 TVATPLNQVANPNSAIFGGARPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVATPLNQVANPNSAIFGGARPR 23 1 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ; 231.06 2.5824000000000002e-33 1481030000.0 228170.0 221433.0 282030.0 301720.0 249770.0 308680.0 330390.0 249250.0 310710.0 316600.0 False True 226941.5580720701 228803.26354592477 321737.3725512947 339917.7210639511 281576.72899722424 287341.67815456097 314407.7734876343 267850.30066585453 234139.68380069264 296394.316945103 0.765674458306511 0.7719556363434014 1.085504526090106 1.1468429103750641 0.9500071792853464 0.9694574481594439 1.0607753101617927 0.9036958043816499 0.7899600984726677 1.0 18.17715826015843 4.2560472641308955 24.71442278010293 0.9878479848849218 0.7688147820459811 0.46598423010155987 0.09397517654438788 194.0006597338828 274181.6439122311 0.024235806571363303 0.0660270508026338 18032.13973386939 -4.2560472641308955 -0.21903320283894068 TVCIYGHLDVQPAALEDGWDSEPFTLVER ddPTM_BT-474_Trastuzumab_2h_R1 1 TVCIYGHLDVQPAALEDGWDSEPFTLVER 29 0 Q96KP4;J3QKT2;J3QRH4;A0A087WYZ1;J3KSV5;J3QRD0;J3QKQ0;J3QLU1;J3QR27;A0A087WVS2;J3KRD5 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 235.55 3.0165e-45 187970000.0 137880.0 158610.0 140030.0 141800.0 125440.0 156860.0 183840.0 143520.0 177310.0 172640.0 False True 137137.66939990805 163889.23796823024 159745.00683742083 159751.8654609183 141414.04045886925 146016.63740872234 174946.95686300044 154230.19117979307 133614.326332274 161621.9673954599 0.8485088482084667 1.014028232729173 0.988386723733869 0.9884291599423128 0.8749679436388402 0.9034454892597976 1.082445410622534 0.9542650276148384 0.8267089461010195 1.0 17.302263774621903 TVDGPSGK ddPTM_BT-474_Trastuzumab_2h_R1 6 TVDGPSGK 8 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;; 140.09 0.0015242 2725223000.0 8848670.0 8458120.0 7665520.0 6939360.0 7133500.0 6978980.0 9628560.0 8577270.0 11979680.0 9687740.0 False True 8801029.74389966 8739643.411158495 8744758.586105742 7817882.264491383 8041908.941432918 6496539.539351811 9162789.768128863 9217349.441894537 9027448.383487765 9069460.139108513 0.9704028254061837 0.9636343593895064 0.9641983593265246 0.8620008406872877 0.886702054817499 0.7163093987632203 1.0102905385313843 1.0163062961320386 0.995367777687275 1.0 23.112585246008383 2.0951433252853047 20.795486433990302 1.008143572256442 0.8955325454040659 0.3805412893825344 0.06970572135617698 5.108081069474777 1108.6291373216188 0.027708136603481936 0.0204638280652235 124.49253926015648 -2.0951433252853047 -0.11261102685237612 TVDLKPDWGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVDLKPDWGK 10 1 P31948;P31948-2;P31948-3;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ; 126.76 0.00034101 19267600000.0 36613000.0 32513000.0 28482000.0 26223000.0 27609000.0 40580000.0 39421000.0 35893000.0 57498000.0 39048000.0 False True 36415879.676086664 33595175.550476484 32492018.030017983 29542829.11129526 31124842.498636212 37774800.11504502 37514055.62715584 38571517.92096099 43328388.33372673 36555923.20932527 0.9961690604163738 0.9190077175210416 0.8888304596758043 0.8081543705551664 0.8514308972696493 1.0333428018967066 1.026210045697496 1.0551372947167574 1.1852631401379525 1.0 25.123601851302293 2.6299548910681447 4.3801146341114645 1.0638484108241306 0.8895846266871335 0.6324844199955599 0.06397982961269391 0.15690876396024334 5.0145968277039845 0.02225824676258449 0.020901353728177002 426.5352135019709 -2.6299548910681447 -0.17426378413699717 TVDS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVDSPK 6 0 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2 Q9NYV4-3;Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 TVDS(1)PK;TVDS(1)PK 106.94 0.033244 1851380000.0 3823200.0 2605900.0 2196500.0 2138800.0 2359500.0 2450500.0 3092500.0 3257700.0 5326400.0 3233100.0 True False 3802616.315997451 2692635.806200183 2505748.107679744 2409571.8607038925 2659968.3391478187 2281102.702856523 2942903.9605027693 3500806.116265415 4013780.090103344 3026760.790003832 1.2563319600795533 0.8896097158033999 0.8278645989981163 0.796089294093453 0.8788168354541328 0.7536448570333287 0.9722948606384727 1.1566180346419062 1.3260975572827685 1.0 21.529343230379247 1.7932298794779802 3.386739582964254 1.1845196525610509 0.889814281115689 0.37467079923568203 0.14880082783526533 0.21889037434728603 4.6942102397862175 0.07941441863578302 0.04024445603903631 62.11977577932194 -1.7932298794779802 -0.2947053714453618 TVDVPASLPT(ph)PPHNNQEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVDVPASLPTPPHNNQEELR 20 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37;H0Y765;H7C2V8 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 TVDVPASLPT(1)PPHNNQEELR;TVDVPASLPT(1)PPHNNQEELR;TVDVPASLPT(1)PPHNNQEELR;TVDVPASLPT(1)PPHNNQEELR 231.44 3.6392e-25 908880000.0 416410.0 427296.0 392625.0 458665.0 412013.0 474675.0 490967.0 425614.0 527811.0 507083.0 True False 414168.09482750023 441518.28905411385 447903.1872423217 516731.9419720178 464480.413357622 441861.83451475995 467217.05053392483 457375.47790410096 397739.05135504936 474720.52880440216 0.8724461439883271 0.9300593976125087 0.9435092018674215 1.0884971485716504 0.9784291707953515 0.9307830769981702 0.9841939039599256 0.9634626062117322 0.8378383221740316 1.0 18.85671891342666 4.53858722984839 2.243421493934849 0.9687184142596736 0.8683866455029838 0.19452858221710478 0.05896021199093053 0.6842679501442583 5.3651160520442565 0.01518110820212133 0.11446396824578489 34561.07399578434 -4.53858722984839 -0.10033176875668981 TVEAEAAHGTVTR ddPTM_BT-474_Trastuzumab_2h_R1 8 TVEAEAAHGTVTR 13 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;;;;;; 292.57 1.4018999999999999e-40 17894932000.0 7663179.0 10509334.0 10073003.0 10681618.0 10695317.0 10307979.0 10464627.0 9888682.0 11193633.0 10697171.0 False True 7621921.295723234 10859130.829163453 11491194.266288383 12033909.74358904 12057302.223839542 9595412.67410255 9958413.013252776 10626625.664549753 8435112.134147596 10014468.388471153 0.761090953614446 1.084344211587376 1.1474592380277784 1.2016523770191043 1.2039882454190118 0.9581549715758225 0.9944025610702503 1.061127286275458 0.8422925518301358 1.0 23.255582502868638 2.6979668292967016 24.93868970283942 0.98401965840471 1.0905034728767973 0.14590485941769882 0.12809828682363344 1048.1538697570638 643929.1974789372 0.042743052452379915 0.04029880747258422 498.84638493269176 -2.6979668292967016 0.10648381447208732 TVEGVLIVHEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVEGVLIVHEHR 12 0 O43809;H3BND3;H3BV41 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 ;;; 109.84 0.0008986 2037270000.0 1324910.0 1893690.0 1819280.0 1894490.0 1826370.0 1697970.0 1655440.0 583794.0 1497480.0 1279660.0 False True 1317776.8317713407 1956720.3268902213 2075418.8105347655 2134332.2397535658 2058947.3937568993 1580593.3304914457 1575360.0428050768 627359.6727258656 1128446.1192039563 1197991.003227955 1.0999889216368286 1.6333347425964722 1.7324160239455928 1.7815928784128297 1.7186668248835928 1.3193699503857532 1.3150015639185193 0.5236764475154334 0.9419487426561537 1.0 20.192185643020863 2.0653999024487737 2.277915432817997 0.7839772572501279 1.593068669109072 0.6491819309491431 0.23441554261738334 0.16920426341238323 1.6876194257673443 0.12136938670511016 0.06988228477781361 116.25185792030486 -2.0653999024487737 0.8090914118589442 TVEIVHIDIADR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVEIVHIDIADR 12 0 A0A0A0MSW4;P48739;P48739-3;P48739-2;B3KYB7;B3KYB6 A0A0A0MSW4 PITPNB Phosphatidylinositol transfer protein beta isoform 0 ;;; 158.2 6.5945e-05 2164710000.0 1836150.0 2225580.0 2057310.0 2044740.0 2092860.0 2309020.0 2208140.0 1945280.0 2390930.0 2424660.0 False True 1826264.372415443 2299657.0849084784 2346961.3655409133 2303603.8743480854 2359373.3156469194 2149402.8822484254 2101323.8322860394 2090446.6715316898 1801717.3383205882 2269916.122944136 0.8045514783368884 1.013102229489329 1.0339418896663228 1.0148409674980656 1.039409911141014 0.9469085049101276 0.9257275240463826 0.920935646212482 0.7937374073468922 1.0 21.11420755792043 2.244290327399053 2.1386989959324096 0.9001827306009086 0.9875115249002454 0.14687248857540924 0.07877521307809351 0.5288061358007993 4.9131572540061095 0.036180430602651095 0.02435278831204506 175.50533691572895 -2.244290327399053 0.08732879429933682 TVEMHNK ddPTM_BT-474_Trastuzumab_2h_R1 5 TVEMHNK 7 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 ;;;; 90.986 0.016736 1348656000.0 2122389.0 2193474.0 1988324.0 1894437.0 1826825.0 2017023.0 2226116.0 1950275.0 2931562.0 2130131.0 False True 2110962.2934435857 2266482.456106969 2268262.736377979 2134272.5299589965 2059460.3353099017 1877590.9475714217 2118430.2644910496 2095814.4237957879 2209117.8260182394 1994184.2158830971 1.0585593229704584 1.1365461816692237 1.1374389177849902 1.0702484318951764 1.0327332444550004 0.9415333511402588 1.0623041981870927 1.0509632997309053 1.1077802183084484 1.0 20.92736725642502 3.4784601762589342 3.8321455904374395 1.034468373673752 1.1130144703146694 0.3756630529996827 0.04519118601844354 0.24044641476091339 7.8669752129471995 0.01308452322396411 0.019424057230759018 3009.2632141495665 -3.4784601762589342 0.07854609664091727 TVENIKDPLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVENIKDPLFR 11 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ; 114.87 0.0010941 1619020000.0 5853800.0 6120000.0 5564500.0 5170200.0 5444600.0 6763800.0 6392400.0 6062100.0 8184500.0 6967900.0 False True 5822283.791218325 6323700.500381879 6347933.232498951 5824746.7898874525 6137937.537327496 6296234.4262725795 6083175.190660592 6514484.684720069 6167539.641681213 6523202.656480679 0.8925498865858468 0.9694165325523654 0.9731313845036531 0.8929274616511685 0.9409392687240171 0.9652060127271056 0.9325442594700123 0.9986635442405045 0.9454772397043159 1.0 22.637149018780246 1.623464259106409 0.6054656295580179 0.9952951078222593 0.9347253328361684 0.28665478593211624 0.030411013359442008 0.9400143790103617 0.7635271342755265 0.028755601874558372 0.01537105712764933 42.02079446327029 -1.623464259106409 -0.06056977498609084 TVEYLHSQGVVHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVEYLHSQGVVHR 13 0 E9PGT3;Q15418-4;Q15418;Q15418-2;Q15418-3;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 0 130.24 8.3509e-05 182880000.0 109120.0 109850.0 90681.0 96801.0 103680.0 119390.0 109130.0 75682.0 127160.0 108200.0 False True 108532.51004437172 113506.2908442726 103448.09658661843 109055.99667476989 116883.033440494 111136.85031382985 103850.96498291567 81329.77514540909 95823.12185670277 101294.58336531956 1.0714542321868143 1.1205563720511238 1.0212599050191282 1.076622194905119 1.15389223744526 1.0971647902732775 1.0252371008662575 0.8029034963507647 0.9459846585391054 1.0 16.628197503848064 1.9539416704685895 6.074176908212064 0.8976071672801159 1.0886917080090608 0.6485923132980758 0.056723123806755045 0.11204735214710364 10.340565498981203 0.02397245051599695 0.014940492518353313 89.93767792832335 -1.9539416704685895 0.19108454072894487 TVFAEHISDECK ddPTM_BT-474_Trastuzumab_2h_R1 6 TVFAEHISDECK 12 0 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2;F8WCR1 P39023 RPL3 60S ribosomal protein L3 0 ;;;;; 192.68 3.7728e-06 9260780000.0 13580910.0 15907000.0 15548490.0 15460540.0 15970990.0 20462670.0 18817720.0 18903210.0 24364870.0 19979330.0 False True 13507791.889540955 16436454.879015453 17737582.24210219 17417842.778795104 18004800.909025796 19048133.786843956 17907434.99292874 20313863.518755436 18360474.261031114 18704232.054235004 0.7221783738767573 0.8787559324197926 0.9483191927190646 0.9312246944055297 0.9626057277742743 1.0183863059232676 0.9574001723783226 1.0860570730652361 0.9816213896295166 1.0 24.156861398114685 5.778498406379767 0.5543851198652165 1.0162013802770609 2.4671845706361503e-14 0.8438043648550267 0.036268991755287035 4.083652928011716 0.398415100768124 0.017797881399152785 3.4481019908173995 600479.8054751678 -5.778498406379767 -1.0162013802770362 TVFAEHISDECKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVFAEHISDECKR 13 1 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2;F8WCR1 P39023 RPL3 60S ribosomal protein L3 0 ; 192.65 1.6478e-06 1224150000.0 1079430.0 1454600.0 1631640.0 1624570.0 1655270.0 1805660.0 1818950.0 1696230.0 2128190.0 1925330.0 False True 1073618.4688159463 1503015.4816757317 1861360.72953088 1830240.3954290831 1866058.8229460497 1680838.974266441 1730960.4394362192 1822811.2958814127 1603726.0907849658 1802453.7910420566 0.5956427144771644 0.8338718524411047 1.0326815249198524 1.0154159870977675 1.0352880235932267 0.9325281916351896 0.9603355426024515 1.0112943282876543 0.889746022203321 1.0 20.78153084333174 4.602648665329219 2.611308003376153 0.9857842906022437 0.5687384780453145 0.8740110697624804 0.04545727309382447 0.11241388432116446 1.186457131628221 0.011318338148066326 0.08857278160735377 40054.25564189119 -4.602648665329219 -0.4170458125569292 TVFPFSYQES(ph)PPRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVFPFSYQESPPRSPR 16 1 A0A494C0H7;A0A494C094;F8WDA1;A0A494C188;A0A494C155;A0A494C1K7;Q9UGJ0-3;Q9UGJ0;A0A494C1R6 A0A494C0H7 PRKAG2 5-AMP-activated protein kinase subunit gamma-2 2 TVFPFSYQES(1)PPRS(1)PR;TVFPFS(0.004)Y(0.001)QES(0.995)PPRS(1)PR;TVFPFS(0.004)YQES(0.995)PPRS(1)PR;T(0.001)VFPFS(0.017)Y(0.002)QES(0.981)PPRS(1)PR 112.58 0.00041415 314825000.0 306783.0 369480.0 326112.0 341821.0 326590.0 365703.0 351885.0 321198.0 386308.0 361003.0 True False 305131.3144147953 381777.9184446238 372025.7349836823 385095.50355230307 368179.30064941105 340422.8123822648 334862.9782187602 345167.42577039613 291107.5696619937 337963.4794697823 0.9028529203614067 1.1296425254100835 1.1007867937900833 1.1394589266167585 1.0894055808249847 1.007276919140319 0.9908259281272451 1.0213157537374031 0.8613580677968548 1.0 18.36650783090143 2.560930788273313 2.7645218986533426 0.9763803250378488 1.0808967132388572 0.30370761194862916 0.07358086365310064 0.34872004885453983 5.233227880778859 0.026254918955209035 0.023597171221549675 363.85704510456145 -2.560930788273313 0.10451638820100839 TVFPGAVPVLPAS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 4 TVFPGAVPVLPASPPPK 17 0 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 TVFPGAVPVLPAS(1)PPPK;TVFPGAVPVLPAS(1)PPPK;TVFPGAVPVLPAS(1)PPPK;TVFPGAVPVLPAS(1)PPPK 169.25 2.0944e-09 1516793000.0 1478450.0 1224230.0 1199450.0 1059440.0 1060108.0 1386220.0 1297590.0 1215830.0 1543080.0 1263290.0 True False 1470490.1894712355 1264977.7554873384 1368322.1341937047 1193564.9953731701 1195106.4700476003 1290393.8742108834 1234820.614424829 1306561.4084596431 1162808.610212651 1182665.7506430172 1.2433692179482898 1.0695987051282816 1.156981280171296 1.0092158284994952 1.0105192184671106 1.0910892392963052 1.0440994116498723 1.1047596565210953 0.9832098457069803 1.0 20.173610960815314 7.999999646257209 0.8106434023828917 1.0477059334059076 51.88817114934766 0.5888175930083983 0.04950207480396135 387.5151001534997 1.2722273719296981 0.015877100944001965 36218.87215032874 99999918.54774553 -7.999999646257209 50.840465215941755 TVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVFPGAVPVLPASPPPKDSLR 21 1 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 TVFPGAVPVLPAS(1)PPPKDSLR;TVFPGAVPVLPAS(1)PPPKDSLR;TVFPGAVPVLPAS(1)PPPKDSLR;TVFPGAVPVLPAS(0.991)PPPKDS(0.009)LR 225.17 1.7582999999999995e-25 12097930000.0 1491850.0 1577240.0 1568860.0 1439990.0 1366290.0 1773310.0 1564270.0 1351580.0 1982560.0 1629990.0 True False 1483818.0453601158 1629737.4799382847 1789741.8512244236 1622292.5863545006 1540278.932864706 1650725.2536227321 1488600.2840082964 1452441.7627841765 1493984.652942941 1525962.6426953527 0.9723816323178164 1.0680061453271434 1.1728608559270821 1.0631273276054762 1.009381809075002 1.0817599379149987 0.9755155482567633 0.9518200001401645 0.9790440546461033 1.0 20.54128821311008 2.22928928808039 22.8445029724537 0.9704603772647653 1.064360420528048 0.405696752452112 0.04989181655239091 65.41250717594318 161172.58372895687 0.019319780729412546 0.01450020316030221 169.54667924886624 -2.22928928808039 0.0939000432632826 TVFRPPLDIYDVLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVFRPPLDIYDVLIR 15 1 Q9H6R4-4;Q9H6R4;A0A0C4DFX0 Q9H6R4-4 NOL6 Nucleolar protein 6 0 ; 152.34 2.5966000000000003e-06 258125000.0 305420.0 344520.0 330830.0 328570.0 350000.0 371970.0 356700.0 352550.0 411800.0 333280.0 False True 303775.65265535214 355987.13993326225 377407.9883740912 370166.9283109592 394570.4253874699 346256.5894231956 339445.05827367376 378859.0712126256 310317.4078372926 312009.7850646368 0.9736093776431439 1.1409486399906177 1.2096030523398693 1.1863952543484315 1.2646091381580535 1.1097619561882142 1.0879308102576122 1.2142538130146787 0.9945758841281417 1.0 18.251231749174533 1.2250831225489753 24.86478938669331 0.997287744714096 1.1539353444881923 0.3806078930518767 0.07684286835530565 247.99926965733215 457522.4147865036 0.07197218410151134 0.018406116670163435 16.791253664938925 -1.2250831225489753 0.15664759977409637 TVFS(ph)PTLPAAR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVFSPTLPAAR 11 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-3 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 TVFS(0.998)PT(0.002)LPAAR;TVFS(1)PTLPAAR;TVFS(0.988)PT(0.012)LPAAR;TVFS(0.999)PT(0.001)LPAAR 228.74 3.1955e-12 526090000.0 2187340.0 2532270.0 2432910.0 2352340.0 2353670.0 2432930.0 2308920.0 2136060.0 2686830.0 2369740.0 True False 2175563.60447632 2616555.0761604584 2775442.580767188 2650146.002809144 2653395.9232049384 2264747.2756011933 2197228.718669055 2295463.6438929015 2024696.7481774495 2218501.164363513 0.9806456897220014 1.179424702673594 1.251044004551362 1.1945659733604288 1.1960308905071937 1.0208456556077348 0.9904113434618995 1.0346912053803088 0.9126417333922537 1.0 21.08115387967006 2.6630683662913066 4.804601552244546 0.9944924367131474 1.1682739852198598 0.5763334490798651 0.07231417898922113 0.16501965194549462 7.072640359596196 0.024223852355947702 0.022915717778472153 460.32903250751224 -2.6630683662913066 0.17378154850671246 TVGFGTNNSEHITYLEHNPYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVGFGTNNSEHITYLEHNPYEK 22 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 102.6 0.00035313 165290000.0 42094.0 43028.0 52569.0 44194.0 37605.0 58338.0 49999.0 59763.0 63751.0 64671.0 False True 41867.37058108304 44460.16096902471 59970.25826206083 49788.95586868707 42393.77384770232 54305.231372880604 47580.357355271706 64222.81853036492 48040.42026963392 60543.64141237131 0.6915238265223999 0.7343489742580936 0.9905294241156543 0.8223647390081388 0.7002184351442017 0.8969601118472539 0.7858852927460236 1.0607690094643336 0.793484157030196 1.0 15.885687828576485 1.7611966392284015 24.99999999999336 0.9546836493912159 0.8080734964540915 0.29136141365500856 0.10575081935321594 15.060199926588698 16645.929840432666 0.04815443262887543 0.026705141344985903 57.70276700086183 -1.7611966392284015 -0.14661015293712432 TVHRDS(ph)EEEDDYLFDDPLPIPLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVHRDSEEEDDYLFDDPLPIPLR 23 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 T(0.179)VHRDS(0.821)EEEDDYLFDDPLPIPLR 167.03 6.8351e-12 77051000.0 65387.0 77539.0 63765.0 69000.0 68127.0 67484.0 75163.0 64861.0 85812.0 79957.0 True False 65034.96365717866 80119.83874168478 72742.55774468431 77735.39292527057 76802.56962963492 62818.98992024876 71527.07853945658 69701.25717748451 64664.78242188868 74854.07580536822 0.868823279927726 1.0703470436267002 0.9717915419038213 1.0384924546713288 1.0260305641784033 0.8392193644015793 0.95555355897303 0.93116181620782 0.8638779081319069 1.0 16.19179325273498 2.7656503029805726 24.993829268220722 0.9183706962815201 1.000393653424389 0.2570869674028833 0.06524953318338829 936.8001546061785 864320.7380404035 0.018630316739755043 0.019756068560897757 582.9754991977065 -2.7656503029805726 0.08202295714286878 TVIDKCS(ph)PPLEFLDDSDSHLEIQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVIDKCSPPLEFLDDSDSHLEIQK 24 1 Q93075;H7C1W4 Q93075 TATDN2 Putative deoxyribonuclease TATDN2 1 T(0.002)VIDKCS(0.998)PPLEFLDDSDSHLEIQK;TVIDKCS(1)PPLEFLDDSDSHLEIQK 229.95 1.4332e-33 310330000.0 374490.0 283580.0 259220.0 239620.0 250950.0 428000.0 359140.0 323700.0 559900.0 385530.0 True False 372473.78744975023 293018.7888722702 295715.92281936895 269955.8674312076 282906.99500281643 398413.367403629 341767.02615196875 347856.1377152948 421920.1472756204 360925.14533116075 1.0319973331533696 0.8118547368136841 0.8193275715052766 0.7479552780494532 0.7838384181939995 1.1038670277131053 0.9469194113321925 0.9637902546139457 1.1689962662160729 1.0 18.461340132442928 2.745086072200222 24.99282543857057 1.0211429806317336 0.8313365292652272 0.5224812357138413 0.0937797377822117 448.3550485456655 1717223.512238021 0.02927148257915701 0.03039948598415762 556.0144420558356 -2.745086072200222 -0.18980645136650642 TVIDSQTHYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVIDSQTHYR 10 0 Q9Y3Q3 Q9Y3Q3 TMED3 Transmembrane emp24 domain-containing protein 3 0 ; 168.22 5.0036e-06 706490000.0 549110.0 743560.0 826600.0 771230.0 673570.0 696860.0 827870.0 616270.0 899920.0 719210.0 False True 546153.6527718566 768308.9451084884 942978.0950640006 868867.6389240058 759345.1469378237 648687.708431993 787822.7653294816 662259.1967556517 678146.7743101914 673309.4020533409 0.8111481157195979 1.1410934449532928 1.4005122937363883 1.290443347849125 1.1277804002470575 0.9634318285972824 1.1700753961357406 0.9835882207139983 1.0071844715699771 1.0 19.36091008511594 2.9891640131147077 23.054686354454354 1.0339067480263051 1.1805888182372348 0.15244277464877998 0.15046095398814574 347.7130644583917 739801.423942903 0.04667530859284706 0.052440672511189106 975.3579161397456 -2.9891640131147077 0.14668207021092972 TVIDYNGER ddPTM_BT-474_Trastuzumab_2h_R1 6 TVIDYNGER 9 0 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 P4HB Protein disulfide-isomerase 0 ;;;;; 214.6 1.5591e-06 6856660000.0 4625270.0 5988850.0 5534390.0 5330880.0 4848590.0 5280440.0 5842090.0 4764720.0 6599860.0 5103370.0 False True 4600368.060235804 6188185.251913728 6313584.006219773 6005768.861412554 5466029.196655531 4915415.611618734 5559485.787748943 5120287.601157915 4973412.936593093 4777668.557385121 0.9628897452764377 1.2952311734451085 1.3214780243515423 1.2570501258671634 1.14407877629066 1.0288314378821213 1.1636399053164377 1.0717126020060952 1.0409706903810645 1.0 22.18787534207979 3.015432660785824 4.616071351279381 1.074890079626912 1.222359152096967 0.319673964651498 0.10027618462969547 0.23343499906083906 12.738922477429348 0.029932634954896054 0.03477562199515013 1036.1739287817586 -3.015432660785824 0.14746907247005492 TVIGCSGFHGDCLTLTK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVIGCSGFHGDCLTLTK 17 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 179.46 9.1483e-10 631830000.0 290930.0 321780.0 269970.0 322570.0 329590.0 399010.0 367630.0 372620.0 398020.0 413540.0 False True 289363.6652053618 332490.25277988234 307979.4293786942 363407.3289261531 371561.3328670185 371427.37786850904 349846.332417019 400426.7965260209 299933.3041947531 387147.52315059374 0.7474248132870123 0.8588205603747318 0.7955092334631714 0.9386792041668154 0.9597409531210858 0.9593949480700414 0.9036512220715791 1.0343002927343068 0.774726134766163 1.0 18.562523886705346 3.732793911792543 18.865560533601997 0.9450710215816027 0.8064083302374973 0.4496110376461665 0.06965497913818297 13.35839281815989 43705.35363251443 0.017283476884251095 0.027831560059008324 5404.977766249233 -3.732793911792543 -0.13866269134410547 TVIIEQSWGS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;P10809-2;C9JCQ4;C9JL25;C9JL19 P10809 HSPD1 60 kDa heat shock protein, mitochondrial 1 TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK 153.09 0.00029887 0.0 395270.0 278980.0 252916.0 204373.0 249530.0 438710.0 272730.0 217668.0 458040.0 304860.0 True False 393141.91023862525 288265.68065302906 288524.37441471906 230246.6008451643 281306.16641981545 408383.01031225675 259537.00797022472 233911.49145570802 345162.1794215488 285403.57379622303 1.3774946999063402 1.0100282796698599 1.0109346935533619 0.8067404264865983 0.9856434615659959 1.430896624314314 0.9093684585587322 0.8195815081934463 1.209382821772208 1.0 18.122643874652756 4.73862682199998 7.236347366328124 1.005448180903426 1.3822734595696087 0.2692767724706895 0.17501721296284442 0.1413397935408268 63.340193273802974 0.04304082600002776 0.2604130826442562 54780.60470780649 -4.73862682199998 0.37682527866618276 TVIIHDRPDITHPR ddPTM_BT-474_Trastuzumab_2h_R1 5 TVIIHDRPDITHPR 14 1 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 0 ;;;; 158.81 3.2328e-06 2851310000.0 941796.0 1255871.0 1166187.0 1253830.0 1197464.0 1204921.0 1155612.0 915369.0 1378712.0 1134422.0 False True 936725.4749793712 1297671.9070449485 1330375.9929208846 1412564.7494419136 1349953.9424748057 1121627.6473489439 1099710.6326934588 983678.4829295989 1038946.9013942914 1062022.2167324615 0.8820206020373166 1.2218877219325164 1.2526818855203152 1.33007080942993 1.2711164806214956 1.056124466774218 1.0354874082361043 0.9262315490499776 0.9782722856691585 1.0 20.018382515913032 2.458693903244272 2.672055048347534 0.9730826063302298 1.2032357272577399 0.41055957191367853 0.11612695919260829 0.26229286223188336 3.81790038049662 0.04530312646691843 0.03801676747039343 287.5371099071866 -2.458693903244272 0.23015312092751006 TVKEEAEKPER ddPTM_BT-474_Trastuzumab_2h_R1 6 TVKEEAEKPER 11 2 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;;; 109.84 0.0010541 15570780000.0 13303320.0 13413820.0 11452140.0 10635470.0 10711770.0 14808690.0 16215320.0 14493870.0 23250880.0 13509070.0 False True 13231696.403257815 13860290.889874587 13064501.768214673 11981919.411520708 12075850.415864967 13785000.116206653 15430923.023062153 15575476.17778058 17521012.169829924 12646909.586903306 1.0462395032032248 1.0959429095806785 1.0330193062931208 0.9474187610172181 0.9548459513279269 1.0899896153667386 1.2201338925552114 1.2315638117560352 1.3853987054650938 1.0 23.592281553609425 2.348485501907781 3.2664372361315603 1.2304761286942567 1.0172248628936011 0.46527489967174573 0.09674497278092041 0.1954210881611765 4.146864938528911 0.03543409798369597 0.028367114210508318 223.0927730975331 -2.348485501907781 -0.21325126580065557 TVKPVENKDDDDSIADFLNS(ph)DEEEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 TVKPVENKDDDDSIADFLNSDEEEDR 26 2 Q15649-2;Q15649 Q15649-2 ZNHIT3 Zinc finger HIT domain-containing protein 3 1 TVKPVENKDDDDSIADFLNS(1)DEEEDR;TVKPVENKDDDDSIADFLNS(1)DEEEDR;TVKPVENKDDDDSIADFLNS(1)DEEEDR 326.52 3.9286999999999983e-95 830060000.0 870030.0 576592.0 484821.0 425625.0 453790.0 716670.0 638129.0 716974.0 1081260.0 691962.0 True False 865345.8551494211 595783.5161627758 553079.5826603246 479509.08135968505 511577.4666759429 667128.2897597163 607260.2623804909 770478.2406002022 814797.9611416991 647800.3927415268 1.3358217513379853 0.9197023077454264 0.8537808696281605 0.7402111618524594 0.7897146596514383 1.029836192189376 0.9374187931725885 1.1893760010541148 1.2577917060121397 1.0 19.30518981723197 1.7569891688763286 5.730954026199026 1.1667968583544888 0.9281972400255797 0.23843231450191282 0.16538413425912127 0.21872337554026958 17.856922452855315 0.08360030644211254 0.0444484976447043 57.14643844101807 -1.7569891688763286 -0.23859961832890908 TVLELQYVLDKLGDDEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVLELQYVLDKLGDDEVR 18 1 Q14444-2;Q14444;G3V153;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 ; 281.5 2.2978999999999997e-39 1439440000.0 703940.0 850600.0 753070.0 862160.0 768580.0 933870.0 983930.0 880510.0 1479200.0 997180.0 False True 700150.0652550862 878911.7068014425 859095.7101982181 971309.3676007435 866454.1072694348 869313.76499352 936333.5469223894 946218.1273391835 1114670.9802645051 933539.118671251 0.7499954219932871 0.9414835321014056 0.9202567873331419 1.0404592032343034 0.9281390462808872 0.9312022898738878 1.0029933702779545 1.0135816576020715 1.194027071785773 1.0 19.832350952303994 6.315944887466284 0.40441290763896015 1.038349014726214 1.951505439841933e-27 0.555410944257928 0.07117296795618722 15.624757003272366 0.7335921939561426 0.05136363286950045 10.22913940663443 2069878.6618336623 -6.315944887466284 -1.038349014726214 TVLPTVPES(ph)PEEEVK ddPTM_BT-474_Trastuzumab_2h_R1 4 TVLPTVPESPEEEVK 15 0 O75152;E9PBY7;E9PQ61;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 TVLPTVPES(1)PEEEVK;TVLPTVPES(1)PEEEVK;TVLPTVPES(1)PEEEVK;TVLPTVPES(1)PEEEVK 330.28 7.925399999999995e-69 663420000.0 1437270.0 1151120.0 1059170.0 972580.0 1068730.0 1421680.0 1417310.0 1346000.0 2074460.0 1382010.0 True False 1429531.8980157073 1189434.333333267 1208291.9295293232 1095708.5282791269 1204826.4306410046 1323402.6078747439 1348749.3006500148 1446445.3548495092 1563237.129339851 1293808.9386017108 1.1049018563441675 0.9193276517464416 0.9339029075152236 0.8468858852245357 0.9312243830554499 1.0228732917126206 1.0424640458178323 1.1179744641529226 1.208244187143525 1.0 20.30319315444174 2.249165066541383 1.7326202821563894 1.1171553602178539 0.9412116111032954 0.4368845139889128 0.0779964760131333 0.3092402194383664 1.8560528757351706 0.04030879083053061 0.025432961316497072 177.48639425643896 -2.249165066541383 -0.17594374911455846 TVLSANADHMAQIEGLMDDVDFK ddPTM_BT-474_Trastuzumab_2h_R1 4 TVLSANADHMAQIEGLMDDVDFK 23 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ;;; 258.48 1.1997999999999999e-43 1097816000.0 985262.0 1033412.0 1069458.0 983781.0 1016619.0 1103650.0 1266698.0 1191371.0 1565019.0 1176332.0 False True 979957.4588648989 1067808.493709254 1220028.3905044226 1108327.573730661 1146079.4036771 1027357.2732126513 1205422.9784837281 1280277.1536793571 1179341.0376301906 1101257.4846515064 0.8898531656064131 0.969626548369987 1.107850259824115 1.0064200145539914 1.0407006714145308 0.9328947022210333 1.0945877737804297 1.1625593210696785 1.0709039929961464 1.0 20.070720393721093 2.1369361913730485 8.302981858833657 1.1037710076109655 0.9986210240967067 0.27659102991475304 0.06788462722628831 0.2848166807284998 20.89534917713608 0.025709686434688277 0.01897730258617768 137.06803644406423 -2.1369361913730485 -0.10514998351425875 TVMDGGLES(ph)DGPNMTENGLEDESRPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVMDGGLESDGPNMTENGLEDESRPQR 27 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 TVMDGGLES(1)DGPNMTENGLEDESRPQR 250.25 2.6767e-46 1117600000.0 735070.0 656390.0 587710.0 648700.0 691770.0 689900.0 631670.0 602260.0 817100.0 673340.0 True False 731112.4647939553 678237.5443538668 670454.4595331043 730825.3534872909 779862.8090579725 642208.8368499143 601113.7088862674 647203.6994143139 615736.6535790482 630366.8647246232 1.1598205833889177 1.075940983430587 1.0635940704560882 1.159365116385921 1.237157047267478 1.0187858416867521 0.9535934430006325 1.026709580772533 0.976790957830618 1.0 19.265832175865214 2.549807966303834 8.912808862131241 0.9929442687373022 1.132414295804251 0.6909014654546219 0.04834902099853707 0.2533729979411624 29.45969365575138 0.016541737369121734 0.01556721075245064 354.656534685261 -2.549807966303834 0.13947002706694867 TVNS(ph)EREIT(ph)RPSERPK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVNSEREITRPSERPK 16 3 A0A1W2PSB7 A0A1W2PSB7 2 T(0.002)VNS(0.956)EREIT(0.623)RPS(0.419)ERPK 56.719 0.077017 552460000.0 452140.0 577980.0 515840.0 534680.0 640280.0 597850.0 609730.0 649050.0 502050.0 688450.0 True False 449705.72847747634 597217.7149037118 588465.788238343 602370.4331780252 721815.8627631138 556522.0366875216 580235.0305052062 697485.4068091183 378326.5046253347 644512.5315883014 0.6977455153109997 0.9266192442092028 0.9130401030188817 0.9346139968660911 1.1199407728881707 0.8634774490979394 0.9002695868074229 1.0821906054957124 0.5869963516349442 1.0 19.297848884357382 4.7434624931155005 4.477848833950674 0.9382886184162572 0.680540973906628 0.19321411723393067 0.1373396967600962 0.3103028926676721 15.63755413481906 0.03109310668272838 0.25414766025606855 55393.970209284606 -4.7434624931155005 -0.25774764450962917 TVNSTRET(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVNSTRETPPK 11 1 Q5SSJ5;Q5SSJ5-2;Q5SWC8;B0QZK9;B0QZK8;Q5SSJ5-5;B0QZK7;B0QZK5;B0QZK6 Q5SSJ5 HP1BP3 Heterochromatin protein 1-binding protein 3 1 TVNSTRET(0.999)PPK;TVNST(0.001)RET(0.999)PPK 92.063 0.016612000000000002 2890500000.0 703080.0 533350.0 540150.0 527310.0 448340.0 692290.0 688020.0 613280.0 967470.0 654690.0 True False 699294.6953995307 551102.2323331162 616198.424932035 594067.3919336876 505433.44148062385 644433.6217753697 654737.8441083631 659046.0677727398 729049.9819338166 612907.1236916912 1.1409472469295279 0.8991610817209811 1.0053699836616672 0.9692616857762605 0.824649317887306 1.0514376434292143 1.0682496887370392 1.0752788510649742 1.1894950372620376 1.0 19.225308947470175 2.495045310728568 24.233626164178148 1.0838175322816028 0.963402376666733 0.28799078897236174 0.0867211210725185 601.0182536212891 812587.7607074357 0.027285101110179278 0.02523460710948504 312.64055336512337 -2.495045310728568 -0.12041515561486982 TVPAHVETVVLFFPDVWHCLPTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVPAHVETVVLFFPDVWHCLPTR 23 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 177.93 3.0715999999999996e-17 131090000.0 75639.0 92625.0 75388.0 92119.0 76893.0 85296.0 68818.0 86196.0 108140.0 94065.0 False True 75231.76802828297 95707.96713200523 86001.9751157572 103781.2559548262 86684.86776948218 79399.6882851867 65489.01042971045 92628.38321441926 81490.34600176013 88061.69116690177 0.8543075545267184 1.0868286296093452 0.9766105326407958 1.1785062787192153 0.9843652401041206 0.9016371050006509 0.7436719595310778 1.051857873577085 0.9253779358758045 1.0 16.42622693010037 2.9962239348954904 24.97413822556685 0.9249394696318474 1.0321918452900407 0.16131433215387403 0.10689652098829744 271.57594637952633 1796168.2200325048 0.030917674033756094 0.03618811049427962 991.3429784690254 -2.9962239348954904 0.10725237565819334 TVPLFPHPPVPSLSTSESKPPPQPS(ph)PPT(ph)SPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVPLFPHPPVPSLSTSESKPPPQPSPPTSPVR 32 1 E9PKC0;Q6IQ23;Q6IQ23-2;H0YDE2;Q6IQ23-3;A0A1B0GUN0;A0A1B0GUM1 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 2 TVPLFPHPPVPSLSTSESKPPPQPS(1)PPT(0.528)S(0.472)PVR;TVPLFPHPPVPSLSTSESKPPPQPS(0.998)PPT(0.866)S(0.134)PVR 117.81 1.7767e-05 1376310000.0 705200.0 580520.0 495240.0 494540.0 500060.0 658120.0 631550.0 465990.0 693790.0 582310.0 True False 701403.2815550851 599842.2572682499 564965.4872967533 557148.7132936715 563739.6769121673 612625.713447841 600999.5137447125 500764.54004927434 522814.75080970285 545146.4772593266 1.2866326956404912 1.1003322635118202 1.0363553849546363 1.0220165341518577 1.0341067959318315 1.123781843969276 1.1024550993453757 0.9185871338045174 0.9590353650235539 1.0 19.05628439904688 TVPLFPHPPVPSLSTSESKPPPQPS(ph)PPTSPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVPLFPHPPVPSLSTSESKPPPQPSPPTSPVR 32 1 E9PKC0;Q6IQ23;Q6IQ23-2;H0YDE2;Q6IQ23-3;A0A1B0GUN0;A0A1B0GUM1 E9PKC0 PLEKHA7 Pleckstrin homology domain-containing family A member 7 1 TVPLFPHPPVPSLSTSESKPPPQPS(0.991)PPT(0.004)S(0.005)PVR;TVPLFPHPPVPSLSTSESKPPPQPS(0.991)PPT(0.004)S(0.005)PVR 146.61 2.5991000000000004e-10 1710760000.0 857350.0 719080.0 798250.0 646040.0 760480.0 1018590.0 1090700.0 918500.0 1226690.0 1061970.0 True False 852734.1228605399 743014.1431069598 910636.6614866196 727828.5977600266 857322.6202818964 948177.2708029484 1037938.6741213808 987043.1340484944 924388.6863038585 994194.1654017395 0.8577138677090932 0.7473531518933412 0.9159545420573298 0.7320789269226112 0.8623291607585172 0.953714378739895 1.0439999652401548 0.9928072084889419 0.9297868751123946 1.0 19.923168111039928 2.7533981947494848 2.989832497143908 0.9929911234083393 0.8146981964065618 0.6828196977323765 0.055739713218698236 0.13999477329186932 2.5411466077365548 0.017545619930334728 0.01769675075092368 566.7586990667406 -2.7533981947494848 -0.17829292700177746 TVPST(ph)PTLVVPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVPSTPTLVVPHR 13 0 P12270 P12270 TPR Nucleoprotein TPR 1 T(0.003)VPS(0.081)T(0.913)PT(0.002)LVVPHR;T(0.004)VPS(0.177)T(0.818)PTLVVPHR 131.86 0.0004619 377180000.0 421122.0 256210.0 211490.0 261855.0 235049.0 253061.0 185426.0 231992.0 378493.0 273726.0 True False 418854.72594305256 264737.7949677843 241265.953695966 295005.8161514021 264981.09690542717 235567.48871151818 176456.23598389205 249304.42107150625 285218.47169635893 256256.5723313811 1.6345131058781424 1.0330966053250554 0.9415015252134497 1.1512126829274527 1.0340460519496992 0.9192641834250846 0.6885920403075776 0.9728703494446005 1.113019147573415 1.0 17.967229480999467 4.74000977046863 3.7951531839644304 0.9681610799980167 1.703325971817672 0.7307175663293406 0.11882410141063876 0.13826623291399454 3.8668579427189513 0.03080151202466021 0.2850794652205817 54955.32372020607 -4.74000977046863 0.7351648918196554 TVQGSGHQEHINIHK ddPTM_BT-474_Trastuzumab_2h_R1 3 TVQGSGHQEHINIHK 15 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;; 128.9 2.4058e-05 4210130000.0 3251920.0 3351600.0 3326000.0 3469720.0 3506600.0 4156350.0 4057700.0 625965.0 4461000.0 2764900.0 False True 3234412.0240422785 3463155.979915018 3794271.8898897506 3908986.19624159 3953144.7247534352 3869031.3074954962 3861413.549080703 672677.6868858642 3361646.3243374503 2588441.7148500145 1.2495595344049284 1.3379308330748674 1.4658517779719862 1.5101696800107758 1.5272295690778177 1.4947337949696444 1.4917908048412247 0.25987747107716586 1.2987143210726066 1.0 21.30365240205129 1.7697530295221262 24.99999999998501 0.781167408460874 1.4449123831483315 0.5198820706863903 0.25558687181676354 17.264724453993864 13844.476087390074 0.11087716499704467 0.061502280718208825 58.850889250957955 -1.7697530295221262 0.6637449746874575 TVQS(ph)LEIDLDSMR ddPTM_BT-474_Trastuzumab_2h_R1 8 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 Keratin, type I cytoskeletal 18 1 TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;T(0.005)VQS(0.995)LEIDLDSMR;TVQS(1)LEIDLDSMR 351.22 6.051999999999999e-76 1085304000.0 900352.0 867637.0 808584.0 861271.0 914651.0 921105.0 879686.0 871744.0 1211156.0 925685.0 True False 895504.6048705108 896515.7730473579 922425.5988618806 970307.8202918941 1031126.3832887857 857431.1793979431 837132.2274531402 936797.963906337 912682.8324589222 866606.9907811986 1.0333456969499664 1.0345125098047019 1.0644105213487427 1.1196630428946979 1.189843140267403 0.9894117962572815 0.9659883157629636 1.080995161442057 1.0531680936893766 1.0 19.725018349085698 TVQS(ph)PNSSVPSPGLAGPVTMTSVHPPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVQSPNSSVPSPGLAGPVTMTSVHPPIR 28 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 T(0.083)VQS(0.856)PNS(0.01)S(0.051)VPSPGLAGPVTMTSVHPPIR;T(0.067)VQS(0.883)PNS(0.028)S(0.022)VPSPGLAGPVTMTSVHPPIR 138.77 1.0596e-06 729740000.0 86793.0 126084.0 133250.0 149609.0 152781.0 136306.0 136090.0 129980.0 136079.0 144811.0 True False 86325.71613160882 130280.62972061252 152010.44177023717 168549.48406024353 172236.75474606612 126883.48704981076 129506.80678571435 139679.7676250663 102544.15381517957 135569.0380010654 0.6367657202888052 0.9609910318873006 1.1212769819097084 1.243274176356691 1.2704726483691102 0.9359326356569235 0.9552830697573924 1.0303220387531893 0.7563980339992801 1.0 17.048668199940757 -0.8646036439880141 6.367980900265559 1.0000000027891687 1.007578505183739 0.0 0.1867464800901689 0.0 4.324725533463942e-10 0.18481624541846273 0.043561604206469984 0.1365829082909194 0.8646036439880141 0.007578502394570252 TVQSLEIDLDSMR ddPTM_BT-474_Trastuzumab_2h_R1 14 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;;;;;;;;;;; 315.13 2.3391e-50 7589544000.0 6250986.0 7282461.0 6865514.0 6777302.0 6962335.0 7115539.0 7265600.0 6674525.0 8192727.0 7405338.0 False True 6217331.385925833 7524853.312044359 7832118.695082554 7635307.738307578 7848947.093257357 6623658.5371071305 6914135.170712664 7172611.948051208 6173739.20776737 6932722.988811173 0.8968094349017087 1.0854109307683049 1.1297319549220313 1.1013432601634765 1.1321593414196547 0.9554194719444515 0.9973188286725854 1.0346024151876825 0.890521547987892 1.0 22.724990685158453 2.7273366883927257 24.809375021808563 0.9842261694809916 1.0751583852027093 0.2930617539225465 0.0716902214321386 895.4786041487707 1979362.7814170744 0.023369389426174062 0.022231417745343946 533.7485256382902 -2.7273366883927257 0.09093221572171772 TVQSQIGPPLTDSRPLGS(ph)PPNATR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVQSQIGPPLTDSRPLGSPPNATR 24 1 Q96QT6;C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6-4;K7EPF7 Q96QT6 PHF12 PHD finger protein 12 1 TVQS(0.001)QIGPPLT(0.009)DS(0.118)RPLGS(0.86)PPNAT(0.012)R;TVQSQIGPPLT(0.007)DS(0.027)RPLGS(0.95)PPNAT(0.016)R 75.436 0.014717 620880000.0 238251.0 245410.0 242804.0 247273.0 244190.0 254146.0 246988.0 232217.0 244388.0 236792.0 True False 236968.28308817442 253578.32349652238 276988.6927097988 278577.7364465279 275286.1490724754 236577.48521533338 235040.24685421435 249546.2117140334 184161.85203142362 221679.7318321693 1.068966842974981 1.1438949397886455 1.2494994035787772 1.2566675994422227 1.241819208266143 1.0672039489584144 1.0602694477822634 1.1257060338874887 0.8307563822336724 1.0 17.758117345129545 1.7691697262122748 1.035605326082727 0.9444754891305005 1.1873596241408007 0.5321585575812677 0.08529426376636493 0.41670415588917814 0.8306047281504446 0.07543720489783894 0.03083641403853566 58.7718993553307 -1.7691697262122748 0.24288413501030015 TVQTDHNAVQR ddPTM_BT-474_Trastuzumab_2h_R1 5 TVQTDHNAVQR 11 0 O43747;O43747-2 O43747 AP1G1 AP-1 complex subunit gamma-1 0 ;;;; 193.23 1.0444e-06 2936549000.0 2205189.0 2322904.0 2174811.0 2214864.0 2251615.0 2256414.0 2406705.0 2159202.0 2387005.0 2320441.0 False True 2193316.507443532 2400220.4554148796 2481005.4850039114 2495265.5553048784 2538344.8238823097 2100433.411207225 2290283.4846440777 2320332.617445593 1798759.601978284 2172348.468750509 1.0096522445614278 1.1048966084135838 1.1420844863029438 1.148648843037648 1.1684795788505857 0.9668952478951741 1.0542891794710094 1.0681217359110904 0.8280253503770941 1.0 21.050824115290595 1.344343283256724 6.705048032898663 0.9156457770308669 1.0859435951767311 0.4766693188693426 0.0708460821891545 0.17309746568308412 9.316160842619162 0.049147970772615006 0.017737777529723685 22.097507158279416 -1.344343283256724 0.1702978181458642 TVQVVPHITDAIQEWVMR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVQVVPHITDAIQEWVMR 18 0 P17812;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8 P17812 CTPS1 CTP synthase 1 0 103.17 0.0009542 0.0 83356.0 83715.0 68377.0 79601.0 76524.0 89337.0 94801.0 60914.0 109820.0 80646.0 False True 82907.22055772232 86501.40316821386 78003.8872564616 89678.4784383257 86268.87780671651 83161.34346667751 90215.11345501147 65459.71199502457 82756.33251260676 75499.10323548566 1.098121924695322 1.1457275578282229 1.0331763413555177 1.1878085248061006 1.1426477151343024 1.101487831018243 1.1949163577960098 0.8670263511720437 1.096123383803453 1.0 16.204171888021587 1.7493019039170778 24.999999999989424 0.9787426975676051 1.1277890787173557 0.4763424241023628 0.06773853839303962 2.1330164532629987 4973.967403191437 0.029000674750789344 0.016082301474066432 56.1438129433653 -1.7493019039170778 0.14904638114975055 TVQYQNELHK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVQYQNELHK 10 0 Q9UL26 Q9UL26 RAB22A Ras-related protein Rab-22A 0 ; 144.1 3.2797e-05 584580000.0 643670.0 657890.0 751880.0 545450.0 666880.0 919440.0 691350.0 579790.0 958650.0 708900.0 False True 640204.5522384593 679787.4709470973 857738.168541883 614503.9140737518 751803.2150925599 855881.2769289534 657906.7592865285 623056.8739139654 722403.5527518718 663657.3950801761 0.9646612197564929 1.024304823522644 1.2924412127408904 0.9259354580076877 1.1328182593395724 1.2896432455567752 0.9913349329996498 0.9388230712605776 1.088518802181958 1.0 19.34007913471625 TVS(ph)ASS(ph)TGDLPK ddPTM_BT-474_Trastuzumab_2h_R1 3 TVSASSTGDLPK 12 0 P78362;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 2 TVS(1)AS(0.01)S(0.842)T(0.148)GDLPK;TVS(1)ASS(0.996)T(0.004)GDLPK;TVS(1)ASS(0.837)T(0.163)GDLPK 227.3 1.9399e-11 2573080000.0 7423800.0 5658300.0 5154200.0 4899400.0 5136500.0 7170100.0 6596700.0 6658000.0 9826700.0 7025300.0 True False 7383831.085661716 5846633.094985417 5879866.5588904815 5519663.537653205 5790602.828579265 6674447.863599902 6277592.419158807 7154853.7686389545 7405041.456033817 6576939.339338073 1.1226849914058736 0.888959559048304 0.8940125878494499 0.8392450124389811 0.8804403583205395 1.014825820831068 0.9544853761401131 1.087869812914991 1.1259099520262699 1.0 22.648984933341424 2.024057700075498 1.6241393133859823 1.079819349895576 0.9225295510557315 0.3283008866089594 0.08234465976278156 0.3996220074752472 1.9743315806398773 0.052216134624740035 0.02604278593012895 105.69579266114562 -2.024057700075498 -0.1572897988398444 TVS(ph)ASST(ph)GDLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSASSTGDLPK 12 0 P78362;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 2 T(0.002)VS(0.997)AS(0.134)S(0.355)T(0.511)GDLPK;T(0.002)VS(0.998)AS(0.015)S(0.405)T(0.58)GDLPK 142.38 0.00062739 101160000.0 778850.0 585720.0 531520.0 533510.0 553510.0 784140.0 726540.0 699880.0 1105970.0 753780.0 True False 774656.7581383694 605215.3361247826 606353.3959453398 601052.311297988 623996.2175891969 729934.2474670121 691394.4845476724 752108.5995186286 833418.5127387352 705673.1150564738 1.097755804507835 0.857642615556281 0.859255345014546 0.8517432483592448 0.8842567532691954 1.0343801285508756 0.9797659423263438 1.0658031083675883 1.1810263065952826 1.0 19.42864052125153 2.273417456512927 1.3390618481016587 1.084223445619421 0.9033852721866763 0.4117842949674363 0.08406827465327818 0.40503191463083976 1.4252828053222817 0.04994744238147972 0.029958895401958494 187.67976739216823 -2.273417456512927 -0.18083817343274478 TVS(ph)DLALQNAFGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSDLALQNAFGDR 14 0 A0A1X7SBR1;Q7Z3G6 A0A1X7SBR1 PRICKLE2 Prickle-like protein 2 1 T(0.008)VS(0.992)DLALQNAFGDR 106.28 0.0020878 0.0 48020.0 46320.0 41884.0 45671.0 39516.0 45139.0 42182.0 42467.0 56387.0 42528.0 True False 47761.46565552354 47861.73319896872 47780.90313774572 51452.9439172469 44548.12837031794 42018.64717577663 40141.49550911163 45636.10318305654 42491.179397089436 39813.82662994737 1.1996200741879475 1.2021384842965042 1.2001082835329784 1.2923385736186623 1.1189109950262732 1.0553782625900827 1.0082300272769509 1.1462375522761166 1.0672468083017221 1.0 15.280981919522697 3.049770573807578 5.851284863865161 1.0688493950282985 1.2199294784889412 0.7464777904135562 0.04585292653100375 0.1051078501344472 8.126048601319484 0.01369089150605751 0.016323984348580897 1121.4258784109006 -3.049770573807578 0.15108008346064272 TVS(ph)DNSLSNSR ddPTM_BT-474_Trastuzumab_2h_R1 6 TVSDNSLSNSR 11 0 Q96RU3-5;Q96RU3-2;Q96RU3;H0Y7W6;Q96RU3-3;B7ZL14;Q96RU3-4 Q96RU3-5 FNBP1 Formin-binding protein 1 1 TVS(1)DNSLSNSR;TVS(1)DNSLSNSR;T(0.001)VS(0.999)DNS(0.001)LSNSR;TVS(0.998)DNS(0.002)LSNSR;TVS(0.999)DNS(0.001)LSNSR;TVS(0.982)DNS(0.018)LSNSR 277.79 3.2600000000000004e-27 6163770000.0 2780610.0 3003270.0 2721530.0 2740720.0 2707170.0 2868180.0 2929480.0 2580820.0 3148060.0 2841900.0 True False 2765639.5047148126 3103232.0264349477 3104697.768037177 3087694.87098765 3051912.0528462776 2669909.467569487 2787769.860699639 2773413.8935384206 2372262.7948428052 2660527.508926998 1.0395079530037286 1.1663972712262969 1.1669481926497032 1.1605573934595137 1.1471078733845255 1.0035263528044756 1.0478259861421086 1.0424300760780143 0.8916512935434932 1.0 21.34328088988597 2.737954165700744 24.94735406422287 1.0074508456458582 1.140858831661082 0.6269104769029673 0.05325983802973034 36.822936670362374 1514733.6832265246 0.01683999863430303 0.016762333645338707 546.9582353118566 -2.737954165700744 0.13340798601522375 TVS(ph)FEALPIMR ddPTM_BT-474_Trastuzumab_2h_R1 7 TVSFEALPIMR 11 0 O15084-2;O15084;O15084-4;O15084-1 O15084-2 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 1 T(0.006)VS(0.994)FEALPIMR;T(0.009)VS(0.991)FEALPIMR;TVS(1)FEALPIMR;TVS(1)FEALPIMR;T(0.001)VS(0.999)FEALPIMR;TVS(1)FEALPIMR;T(0.02)VS(0.98)FEALPIMR 206.36 2.7947e-08 1064223000.0 822279.0 759470.0 687130.0 809107.0 843536.0 770009.0 613178.0 557862.0 947029.0 732708.0 True False 817851.9412277844 784748.4998406902 783871.9313589722 911539.8632403903 950955.3095704138 716780.0902362167 583516.2375725677 599492.4952058378 713646.3924884497 685945.9481371205 1.1922979404556464 1.1440383924883526 1.1427604951786614 1.328880017027484 1.3863414634243425 1.0449512708440585 0.8506737872820307 0.8739646277289466 1.0403828383658473 1.0 19.387735372370127 2.507951484531141 5.919908106438338 0.92391567850138 1.2327879791729301 0.7185964927828922 0.08820928501835412 0.10119789407773021 10.961042924876203 0.031791309150223795 0.0289496290249268 322.0708982580258 -2.507951484531141 0.30887230067155014 TVS(ph)PGSVS(ph)PIHGQGQVVENLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 2 TVS(1)PGS(0.002)VS(0.998)PIHGQGQVVENLK 306.75 3.1354e-56 1048700000.0 899710.0 848210.0 881010.0 814470.0 748680.0 1066800.0 1004700.0 917630.0 1230900.0 992840.0 True False 894866.0613271793 876442.1570962272 1005048.5501238041 917581.818490509 844019.9602259758 993054.6269770818 956098.8226732841 986108.2102307249 927561.1882149673 929476.1011869118 0.962763927103089 0.9429421111280194 1.0813065003396953 0.9872032398883476 0.908059883571174 1.0684025395693146 1.0286427176044397 1.0609290642023992 0.9979397932130807 1.0 19.826058245291755 2.7054236266823297 24.997725076429116 1.0368349461122908 0.9810154466639662 0.24962537301740173 0.046600000858395094 924.895202122549 697717.3046774747 0.015257471718534664 0.01438590082573241 507.4854867817388 -2.7054236266823297 -0.05581949944832454 TVS(ph)PGSVSPIHGQGQVVENLK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 1 T(0.026)VS(0.936)PGS(0.03)VS(0.008)PIHGQGQVVENLK 127.73 1.2444e-05 198560000.0 81347.0 96120.0 77993.0 76491.0 73647.0 98623.0 106670.0 91853.0 109040.0 101170.0 True False 80909.03679050127 99319.29609423298 88973.73647269123 86174.75275720103 83025.50891003154 91805.42414357021 101509.96458102827 98707.53728008328 82168.55306114224 94713.2439840052 0.8542526196670539 1.0486315526369854 0.9394012149738717 0.9098490256732615 0.8765987249265009 0.9692986987023057 1.0717610369059989 1.0421724895913462 0.8675508261021927 1.0 16.531278554916735 2.4767448457921857 24.999976625670744 1.0079265391671681 0.9314989286517236 0.17337445672519136 0.06946080888839433 21.24475722207371 1410827.053919471 0.024039146828975597 0.020292080194093662 299.7400985707361 -2.4767448457921857 -0.07642761051544456 TVS(ph)PPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSPPIR 7 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 TVS(1)PPIR;TVS(1)PPIR 141.52 0.0026761 3426300000.0 383230.0 335770.0 385520.0 372380.0 371780.0 393890.0 386350.0 332850.0 421900.0 397300.0 True False 381166.73226085573 346945.90147274866 439797.86500008893 419523.2698190181 419123.97928729653 366661.3114173255 367660.77449967427 357688.9571780526 317928.39817035914 371943.9738543575 1.024796095796163 0.9327907584506333 1.182430408651549 1.1279205990934842 1.1268470757679578 0.9857971554632566 0.9884842888828187 0.9616742905427828 0.8547749675193036 1.0 18.504725798109348 2.5482457436235806 3.7685793344997705 0.9532227828337 1.0790331350393694 0.41105661662951465 0.07293319305426649 0.2599222616983065 7.138182363820888 0.02665042177061218 0.02427244216032683 353.383073488096 -2.5482457436235806 0.12581035220566938 TVS(ph)PPIRK ddPTM_BT-474_Trastuzumab_2h_R1 8 TVSPPIRK 8 1 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;Q9UHB6-3;F8VS07 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 T(0.026)VS(0.974)PPIRK;T(0.018)VS(0.982)PPIRK;T(0.078)VS(0.922)PPIRK;T(0.025)VS(0.975)PPIRK;T(0.166)VS(0.834)PPIRK;T(0.015)VS(0.985)PPIRK;T(0.013)VS(0.987)PPIRK;T(0.001)VS(0.999)PPIRK 108.93 0.0022761999999999995 10046260000.0 5662640.0 5699330.0 5381920.0 5163150.0 5206850.0 6693420.0 6513880.0 5666790.0 7706910.0 6503530.0 True False 5632152.975418444 5889028.753732261 6139647.555512758 5816804.26061031 5869911.484082142 6230719.630015876 6198778.738961926 6089674.645176568 5807645.297803079 6088469.147447847 0.9250523964269933 0.9672429326837951 1.0084057924620287 0.9553804281078746 0.9641030186615432 1.0233639161377137 1.0181177877135696 1.0001979968526615 0.9538761151869377 1.0 22.53764809942367 2.762829171432469 24.34736479719677 1.0007966181804573 0.9661990420434352 0.3149175825905005 0.0257076145768417 729.162926585398 731528.8536688032 0.008082107930304352 0.008568265063392203 579.2008245253732 -2.762829171432469 -0.03459757613702208 TVS(ph)PQSNSSRPTCAR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSPQSNSSRPTCAR 15 1 Q9H7N4;M0R3G4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 1 T(0.021)VS(0.979)PQSNSSRPTCAR;T(0.001)VS(0.964)PQS(0.035)NSSRPTCAR 112.56 0.00045668 289760000.0 122786.0 129528.0 122639.0 119961.0 125939.0 144054.0 141090.0 112178.0 157937.0 140183.0 True False 122124.93381880705 133839.2611786704 139905.5052027027 135148.05030012148 141976.58515106447 134095.88604664087 134264.93768385952 120549.29198834187 119015.54259737389 131236.4009232957 0.9305721046875244 1.0198333712069412 1.0660571626348843 1.0298061311443008 1.0818384545157265 1.0217888109032833 1.0230769568447242 0.9185659705709228 0.9068790500200886 1.0 17.001808408933737 1.7698868972878432 6.82185307118849 0.9350329599670651 1.0286044697030619 0.4234992598179177 0.043928682420012986 0.15049699910198258 18.449242439561466 0.020843098780044075 0.011480186497919707 58.86903235824816 -1.7698868972878432 0.0935715097359967 TVS(ph)PSTIR ddPTM_BT-474_Trastuzumab_2h_R1 6 TVSPSTIR 8 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 T(0.009)VS(0.989)PS(0.002)TIR;T(0.01)VS(0.989)PS(0.001)TIR;T(0.005)VS(0.991)PS(0.004)TIR;T(0.011)VS(0.986)PS(0.003)TIR;T(0.015)VS(0.917)PS(0.052)T(0.015)IR;T(0.029)VS(0.893)PS(0.077)T(0.001)IR 137.28 0.00079199 2537780000.0 2653070.0 3122170.0 2880340.0 3006550.0 2944710.0 3303100.0 3165820.0 2961980.0 3752850.0 3320600.0 True False 2638786.1659037885 3226089.541058381 3285866.835635913 3387178.9217314827 3319701.363836391 3074764.471661043 3012677.191993165 3183017.988229678 2828010.4031136087 3108676.465091313 0.8488455442487735 1.0377694743359598 1.0569986528139381 1.0895887557832395 1.0678825542364312 0.989091179538597 0.9691189243473337 1.0239142039942652 0.909715254987315 1.0 21.567869045605413 -0.43171491935288053 7.829121580652121 0.9999990826986346 1.0064874539304793 0.0 0.0710096401099376 0.0 0.0 0.06767166659546224 0.015950364781282176 0.37007102299465827 0.43171491935288053 0.006488371231844758 TVS(ph)SPIPY(ph)TPSPSSSRPISPGLSYASHTVGFT(ph)PPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 T(0.095)VS(0.448)S(0.457)PIPY(0.151)T(0.151)PS(0.15)PS(0.122)S(0.122)S(0.122)RPIS(0.12)PGLS(0.04)Y(0.044)AS(0.038)HT(0.098)VGFT(0.728)PPT(0.041)S(0.038)LT(0.034)R 77.425 0.0017649 2776600000.0 46215.0 70845.0 53048.0 79265.0 61509.0 85873.0 72060.0 69430.0 66381.0 74024.0 True False 45966.183574969225 73203.03299829323 60516.69729851821 89299.9408727764 69341.80655759391 79936.80163329854 68574.18250406768 74611.21915839636 50022.292009828365 69299.72494486511 0.6632953249315194 1.0563250150925358 0.873260281287773 1.2886045499289278 1.0006072406890831 1.1534937793316826 0.989530370555227 1.07664524235496 0.7218252604844553 1.0 16.08056200577245 4.741273173459995 24.333119846619013 1.0286102915030557 0.6632951350828571 0.3505121740330748 0.1441003159972213 179.8125491723671 1612884.4751690326 0.0322457131083542 0.22115739297956424 55115.42662615074 -4.741273173459995 -0.36531515642019863 TVS(ph)SPIPYTPS(ph)PSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 T(0.083)VS(0.459)S(0.459)PIPY(0.136)T(0.158)PS(0.702)PS(0.193)S(0.179)S(0.165)RPIS(0.457)PGLS(0.004)Y(0.001)AS(0.003)HTVGFT(0.001)PPTSLTR 90.331 0.0023871 2163300000.0 16266.0 19168.0 18059.0 13263.0 12907.0 23735.0 18959.0 9990.2 18585.0 20825.0 True False 16178.425663322494 19805.995292699314 20601.5502283581 14942.094440113968 14550.629944217373 22094.25531618021 18041.880739586722 10735.719453207708 14004.975776241106 19495.930670820493 0.8298360276555917 1.0159040687574301 1.056710273349114 0.7664211928327054 0.7463419002610253 1.1332752300585796 0.9254177727760367 0.5506646301977176 0.7183537945794153 1.0 14.250885405386795 1.771614124175596 24.999999999964867 0.7095817451943565 0.9284759426736798 0.17785741958823154 0.15648596324241482 39.79920699091098 30116.671573453703 0.07148776977631374 0.03965917275747671 59.10362580475311 -1.771614124175596 0.21889419747932337 TVS(ph)SPIPYTPSPSSSRPIS(ph)PGLSYASHT(ph)VGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 T(0.036)VS(0.636)S(0.307)PIPY(0.014)T(0.009)PS(0.08)PS(0.166)S(0.154)S(0.143)RPIS(0.461)PGLS(0.184)Y(0.427)AS(0.125)HT(0.236)VGFT(0.021)PPTSLTR 123.41 1.8696e-08 421880000.0 55627.0 44315.0 44630.0 46600.0 51420.0 49359.0 55239.0 67191.0 67385.0 58305.0 True False 55327.510412740725 45789.99798601679 50913.5160690859 52499.55522199436 57968.03220978205 45946.92850858809 52566.87853652782 72205.13360898472 50778.86966273919 54583.9249825781 1.0136227915159997 0.8388916333999776 0.9327565961102338 0.9618134870064946 1.0619982390105527 0.8417666652453678 0.9630468778730354 1.3228278038274253 0.9302898184574783 1.0 15.736188518194238 1.9661268300009043 24.905185736122455 1.1259161111904816 0.939700885823158 0.21256013880119173 0.11559006277621452 628.5178806997277 462115.7997280588 0.04549841350808005 0.02937415768982557 92.49682593336311 -1.9661268300009043 -0.1862152253673236 TVS(ph)SSGCEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSSSGCEGK 10 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 TVS(0.478)S(0.478)S(0.044)GCEGK;TVS(0.97)S(0.015)S(0.015)GCEGK 163.59 6.732e-06 692680000.0 1206230.0 779220.0 634490.0 687620.0 663890.0 649990.0 747600.0 738040.0 1091960.0 837790.0 True False 1199735.7917047504 805155.8666515633 723820.6769140548 774672.6214967322 748432.4563156785 605057.7212118802 711435.731890661 793116.2924911829 822861.0895143518 784321.5249318953 1.5296479231638154 1.026563521537264 0.9228621858579057 0.9876977704570827 0.9542418925461301 0.7714409231143043 0.9070715379798314 1.0112132171306292 1.0491374562056077 1.0 19.58108566874393 4.74080035516982 3.2483448960642454 0.947558102622866 1.6134963680756864 0.8510386054412391 0.07223520573799784 0.12481524475470061 2.1011678122064317 0.018832135388981635 0.21020789409448865 55055.45487329282 -4.74080035516982 0.6659382654528204 TVS(ph)SSGCEGKR ddPTM_BT-474_Trastuzumab_2h_R1 3 TVSSSGCEGKR 11 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 T(0.047)VS(0.915)S(0.03)S(0.008)GCEGKR;T(0.056)VS(0.885)S(0.029)S(0.029)GCEGKR;TVS(0.445)S(0.445)S(0.11)GCEGKR 79.875 0.015895 550054000.0 410953.0 344202.0 300380.0 397781.0 312842.0 392450.0 371405.0 317666.0 504901.0 435913.0 True False 408740.4747091702 355658.55549549736 342670.8930502358 448140.033814595 352680.57434019126 365320.8552279298 353438.7212451184 341371.84999526304 380474.9138767774 408092.6591361043 1.0015874227545216 0.8715142199528773 0.8396889416625124 1.0981330435182721 0.8642169037952914 0.8951909500192466 0.866074685080875 0.8365057355305453 0.9323248173152853 1.0 18.638537233738557 TVSASS(ph)TGDLPK ddPTM_BT-474_Trastuzumab_2h_R1 6 TVSASSTGDLPK 12 0 P78362;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 TVSAS(0.024)S(0.972)T(0.004)GDLPK;TVSAS(0.094)S(0.901)T(0.005)GDLPK;TVSASS(0.946)T(0.054)GDLPK;TVSASS(0.998)T(0.002)GDLPK;TVSASS(0.997)T(0.003)GDLPK;TVSAS(0.006)S(0.991)T(0.003)GDLPK 301.38 1.6072e-36 2968730000.0 6149580.0 5610960.0 5081860.0 4845790.0 4863210.0 6555170.0 6764070.0 6066740.0 8490530.0 6658070.0 True False 6116471.34456257 5797717.411703049 5797341.71568103 5459266.517149961 5482510.966996002 6102026.527110389 6436866.092843314 6519470.945081509 6398152.648773123 6233146.272339495 0.981281535410987 0.9301430061783204 0.9300827322804197 0.8758444417350287 0.8795736097715936 0.9789641154723148 1.0326833049639563 1.0459358180013554 1.0264724056237646 1.0 22.57152913798549 2.4688418759617523 3.731606684377808 1.0311188467099655 0.9183551174548362 0.7395532777951792 0.02983642375795033 0.11439723669328455 3.5105647173457415 0.011324706931555701 0.009773964310639111 294.33497825306256 -2.4688418759617523 -0.11276372925512923 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK ddPTM_BT-474_Trastuzumab_2h_R1 12 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.012)EGS(0.988)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.035)EGS(0.965)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK 223.72 2.3926e-34 2600548000.0 2142316.0 1742242.0 1656087.0 1615441.0 1609838.0 2396178.0 2348938.0 2234158.0 3673526.0 2518780.0 True False 2130782.008689684 1800231.4717624697 1889249.6546337465 1819955.6649651022 1814841.3270426115 2230535.8548562923 2235310.8951254445 2400882.2147844504 2768234.740026468 2358029.303963952 0.9036282988967713 0.7634474553544354 0.801198548066317 0.7718121491983478 0.7696432457356583 0.9459322032625558 0.9479572163788581 1.0181731884113825 1.1739611273587407 1.0 21.169150216573478 2.1979776316887096 1.2530516077127922 1.0736507589822655 0.7982954245893725 0.7642291863901857 0.062250324433411226 0.20829800874219256 0.6273048954314376 0.03976733411696089 0.021908199753038912 157.75300170178252 -2.1979776316887096 -0.27535533439289295 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_BT-474_Trastuzumab_2h_R1 13 TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLK 35 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 TVSLGAGAKDELHIVEAEAMNY(0.214)EGS(0.77)PIKVT(0.016)LATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.005)EGS(0.995)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.023)EGS(0.976)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(0.997)PIKVT(0.003)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.003)EGS(0.997)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;T(0.005)VS(0.005)LGAGAKDELHIVEAEAMNY(0.18)EGS(0.755)PIKVT(0.052)LAT(0.004)LK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.122)EGS(0.874)PIKVT(0.005)LATLK 331.27 6.2430999999999965e-118 14284035000.0 3358374.0 2950091.6 2764246.4 3016389.8 2920024.0 4211690.0 4483776.0 3904302.0 7800833.0 4740917.0 True False 3340292.887534427 3048283.6155379703 3153428.265859572 3398264.43940259 3291871.7480617776 3920545.783551846 4266878.625192318 4195660.840883844 5878422.232956806 4438347.618156755 0.7525983034473649 0.6868059642439458 0.7104960082349724 0.7656598202224386 0.7416885812627924 0.8833345471889937 0.9613664796639683 0.9453204664997151 1.324461880567641 1.0 22.081591235360893 2.1276687151756786 0.96305038052132 1.1231841648009742 0.7187502036619785 0.7491109956677733 0.09198567602593263 0.26733089059487675 0.46284494269366205 0.06853105307001713 0.03571644940475316 134.17410751520222 -2.1276687151756786 -0.40443396113899566 TVSLGAGAKDELHIVEAEAMNYEGSPIK ddPTM_BT-474_Trastuzumab_2h_R1 5 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 ;;;; 180.7 8.7868e-18 3002820000.0 2030480.0 1984270.0 1896673.0 2096170.0 2001922.0 2566200.0 2596310.0 2335140.0 4001640.0 2709290.0 False True 2019548.1212875347 2050315.2274334552 2163708.0722227506 2361544.90707485 2256854.90037867 2388804.6341850264 2470716.566432642 2509400.0044006575 3015489.441228811 2536380.792660136 0.7962322247242098 0.8083625429457306 0.8530690969132718 0.9310687550973293 0.8897934044090039 0.941816245059823 0.9741110536645304 0.9893624851845763 1.1888946052403235 1.0 21.27433992617429 2.8033075549726916 0.5208888068225491 1.0717289590784318 0.7904261170892044 0.7248079967489673 0.05679918836918661 0.5396742790150957 0.30603844792182633 0.04875287448192105 0.06527786709945264 635.7810144568501 -2.8033075549726916 -0.2813028419892274 TVSLT(ph)PS(ph)PTTQVETPDLVDHDNTSPLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 T(0.005)VS(0.026)LT(0.969)PS(0.933)PT(0.036)T(0.03)QVET(0.001)PDLVDHDNTSPLFR;T(0.015)VS(0.088)LT(0.897)PS(0.977)PT(0.01)T(0.009)QVET(0.003)PDLVDHDNTSPLFR 132.96 3.1021e-05 160713000.0 37673.0 39268.0 40851.0 44932.0 36264.0 39937.0 44644.0 37486.0 50960.0 46136.0 True False 37470.172753863786 40575.011641992714 46602.46571674271 50620.38659301823 40882.00544643209 37176.24919158578 42484.399163358285 40283.39567005104 38401.590829015186 43191.560980983166 0.8675345808955955 0.9394198940820293 1.0789715550512595 1.1719971550763333 0.9465276206255211 0.860729465368342 0.9836273151151856 0.9326682054345624 0.8890993971235038 1.0 15.398461837303643 3.0264596871204588 24.99966503721339 0.9306369949432352 1.0194178611376512 0.17546745297033262 0.08398276608451932 378.81835875661204 357912.89661614876 0.025701377475125523 0.03071823040351498 1062.8199236750306 -3.0264596871204588 0.08878086619441605 TVSLTPS(ph)PTTQVETPDLVDHDNT(ph)SPLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 TVSLT(0.002)PS(0.973)PT(0.012)T(0.013)QVET(0.017)PDLVDHDNT(0.511)S(0.471)PLFR;TVSLT(0.004)PS(0.993)PT(0.002)T(0.002)QVETPDLVDHDNT(0.659)S(0.341)PLFR 243.55 3.6474999999999994e-45 290210000.0 162471.1 189438.0 204979.0 193117.7 183750.4 197359.0 185784.0 168093.2 182647.0 183793.0 True False 161596.37364983608 195743.32931231093 233838.26149059285 217566.3810191963 207149.92426605077 183716.03686311372 176796.91815619913 180637.16814397438 137636.09419440984 172063.17338689632 0.9391688556532379 1.137624777337845 1.3590256234830147 1.2644564013124573 1.203917841270191 1.067724331981342 1.027511667233166 1.0498305046240128 0.7999160510943575 1.0 17.392578825403874 2.112448169369962 1.2097491116315662 0.9361614626517869 1.1899525189948805 0.42628874668605865 0.11705046511274593 0.47702451597519074 1.3119709875683419 0.08620781053328483 0.04385993946765207 129.55320737456876 -2.112448169369962 0.2537910563430936 TVSLTPS(ph)PTTQVETPDLVDHDNTSPLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TVSLT(0.002)PS(0.911)PT(0.042)T(0.042)QVET(0.001)PDLVDHDNTSPLFR 89.79299999999998 0.0020041 561770000.0 32124.0 32853.0 24774.0 33593.0 29573.0 37494.0 35796.0 31798.0 46842.0 37197.0 True False 31951.047953311943 33946.492244942114 28261.963860531767 37845.8703556321 33338.94625709616 34902.12803138236 34064.41072600066 34170.92822697227 35298.41675064223 34823.055614046105 0.9175256849207765 0.9748280742844857 0.8115877071147117 1.0868049827415698 0.9573814149625826 1.002270691527264 0.9782142929542506 0.9812731141602979 1.013650758907107 1.0 15.087755180063375 3.7354584603804084 24.999302771203187 0.997651616149206 0.9086652507026917 0.46607445141978854 0.049375080548766596 250.09153326075625 2015413.15848355 0.01223627714781135 0.019916901585404146 5438.241132671986 -3.7354584603804084 -0.08898636544651439 TVSLTPSPT(ph)TQVETPDLVDHDNTSPLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TVSLT(0.001)PS(0.291)PT(0.354)T(0.354)QVETPDLVDHDNTSPLFR 187.69 2.8319e-17 756700000.0 38057.0 34409.0 36508.0 37455.0 29261.0 39744.0 32958.0 38203.0 32239.0 39266.0 True False 37852.10534053018 35554.282764320255 41648.009066775434 42196.79915965231 32987.214906465044 36996.59082731268 31363.69562821346 41053.901850903276 24294.130430467423 36760.010262686104 1.0297087805482097 0.9672000228033194 1.1329705505836318 1.1478995478541778 0.8973668579181355 1.0064358133454254 0.8532014927114896 1.1168087701154905 0.6608847564748264 1.0 15.165849548949092 3.2276466447940795 24.9846844870454 0.9401069517462428 1.0666790990859367 0.25133538617346884 0.12198720409516425 336.0211072640071 769231.3101254494 0.034177001473147534 0.04122207176207037 1689.0660968412549 -3.2276466447940795 0.1265721473396939 TVSLTPSPTTQVET(ph)PDLVDHDNTSPLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TVS(0.001)LT(0.016)PS(0.228)PT(0.126)T(0.126)QVET(0.266)PDLVDHDNT(0.176)S(0.061)PLFR 91.779 0.010265 825560000.0 19760.0 15723.0 19239.0 16264.0 16198.0 21130.0 19757.0 19495.0 26012.0 16554.0 True False 19653.61435554238 16246.330550245793 21947.68397161422 18323.0207324145 18260.719286932137 19669.332834669793 18801.278430930688 20949.815893604162 19601.691142942356 15497.509547407572 1.2681788835439074 1.0483187960328428 1.416207159251961 1.1823203383978287 1.178300244376155 1.2691931419368014 1.2131806322439578 1.3518182279235087 1.2648284605329592 1.0 13.919748772320952 2.7106269560938023 23.92723589091466 1.249798767946403 1.2181567834783615 0.0 0.12173504743725957 2654.4028829011922 2273684.1980213514 0.03753444943889288 0.03539642414088444 513.6022954857152 -2.7106269560938023 -0.03164198446804156 TVSLTPSPTTQVETPDLVDHDNT(ph)SPLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TVSLTPSPTTQVETPDLVDHDNT(0.5)S(0.5)PLFR 271.58 7.279199999999997e-61 874120000.0 291530.0 259060.0 255790.0 263870.0 265360.0 278900.0 267650.0 232190.0 328670.0 244410.0 True False 289960.43487202795 267682.65549492306 291803.0086334632 297275.9149447992 299152.02308805473 259620.29945998115 254702.7469777092 249517.1968369296 247673.68245236296 228811.54455007147 1.2672456516221589 1.1698826474043809 1.2752984523016806 1.2992172904970951 1.3074166501358084 1.134646855212184 1.113155140307931 1.0904921660643179 1.0824352544771352 1.0 17.80380031870768 2.5494276783290464 3.387650602827341 1.0833395201633984 1.2608292807564392 0.8006685359808268 0.045385339913084854 0.11808108768290022 2.6370806061901733 0.016417081623284265 0.014860758406119005 354.3461172419965 -2.5494276783290464 0.17748976059304078 TVSLTPSPTTQVETPDLVDHDNTS(ph)PLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TVSLTPSPTTQVETPDLVDHDNT(0.165)S(0.835)PLFR 250.29 2.1483999999999998e-46 866170000.0 295850.0 292260.0 253520.0 225040.0 239470.0 268080.0 255280.0 213430.0 301810.0 259930.0 True False 294257.1764720251 301987.69742509915 289213.41236465686 253530.04092612883 269965.085050107 249548.26059244087 242931.13113569815 229357.23037557988 227432.9695468028 243341.0448627309 1.2092377454778174 1.2410060028938026 1.1885106046446157 1.0418712596107473 1.1094103964351545 1.025508297349555 0.9983154764241932 0.9425340903954805 0.9346264197850311 1.0 17.89262015774503 3.418687210371965 0.6253676077377814 0.9507140895338251 1.2649262664246235 0.8780771074020998 0.03688762284572976 0.3160727860485447 0.24488907783178748 0.023626129292003854 0.05822462655072151 2622.3291967388536 -3.418687210371965 0.3142121768907984 TVSPDRLELEAAQK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSPDRLELEAAQK 14 1 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 ; 223.7 3.1222e-12 1908160000.0 1183070.0 1138510.0 1117110.0 1144230.0 1073410.0 1318080.0 1356390.0 1272910.0 1762130.0 1440140.0 False True 1176700.482571434 1176404.6171061713 1274389.3779058158 1289089.400679454 1210102.4009004708 1226964.2320265772 1290776.233787016 1367901.00790601 1327876.6728322709 1348229.0322341144 0.8727749176425573 0.8725554701613142 0.9452321137114658 0.956135322604156 0.8975495794622094 0.9100562313165794 0.9573864698997804 1.0145909746797972 0.9849043753581554 1.0 20.362634166438298 2.033110821373468 3.0956720976924017 1.0000963501377371 0.9106190616910766 0.7091523726491158 0.026157226025248566 0.15142452852592117 2.8842306790293883 0.01333028547376994 0.008195037915004933 107.92220782835172 -2.033110821373468 -0.08947728844666047 TVSPGSVS(ph)PIHGQGQVVENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 1 TVSPGS(0.196)VS(0.804)PIHGQGQVVENLK;TVSPGS(0.38)VS(0.62)PIHGQGQVVENLK 389.09 2.4671999999999984e-131 3874200000.0 3198800.0 2697000.0 2633100.0 2603300.0 2753200.0 3378600.0 3478300.0 3085400.0 3821000.0 3270700.0 True False 3181578.0162200895 2786768.014629069 3003817.5926845204 2932877.5130776353 3103803.700505097 3145045.334368925 3310041.340603641 3315648.2153437426 2879365.748776826 3061961.125812854 1.0390654503738943 0.910125210648868 0.981011015248308 0.9578428309729271 1.0136652860611137 1.0271343120118857 1.0810200406201855 1.0828511790669917 0.9403665267018847 1.0 21.54602453604397 3.026785385934847 2.673167355791773 1.0400043103215504 0.9680758246793256 0.18811158895247426 0.04897236483765227 0.3386765578001406 4.910348619935029 0.01536196429708603 0.018128781933856235 1063.6172836159058 -3.026785385934847 -0.07192848564222476 TVSS(ph)PIPYTPS(ph)PSSSRPIS(ph)PGLSY(ph)ASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 4 T(0.085)VS(0.24)S(0.667)PIPY(0.092)T(0.21)PS(0.615)PS(0.13)S(0.144)S(0.141)RPIS(0.412)PGLS(0.248)Y(0.301)AS(0.216)HT(0.182)VGFT(0.254)PPT(0.022)S(0.021)LT(0.019)R 54.309 0.029515 120640000.0 63373.0 62477.0 62126.0 56029.0 47401.0 71447.0 71122.0 69740.0 96484.0 74880.0 True False 63031.80680940218 64556.50917685593 70872.80079112768 63122.2656552172 53437.23638226135 66508.03705814733 67681.5571475756 74944.35293254437 72706.81101936227 70101.09429200675 0.8991558184076645 0.920905869285652 1.011008480066037 0.9004462240244185 0.7622881913892535 0.9487446341580275 0.965485030314184 1.0690896296192323 1.0371708423908674 1.0 16.09714934471729 2.070529852050407 2.5839221467534723 1.0402469696128414 0.9045513349095057 0.4769771867694381 0.0602246135517347 0.2517558966678393 3.2781624543835153 0.031158460002015973 0.018808278700224897 117.63318392936893 -2.070529852050407 -0.13569563470333568 TVSS(ph)PIPYTPSPSSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 TVSSPIPYTPSPSSSR 16 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 TVSS(1)PIPYTPSPSSSR;TVSS(1)PIPYTPSPSSSR;TVS(0.003)S(0.997)PIPYTPSPSSSR;TVSS(1)PIPYTPSPSSSR;TVS(0.001)S(0.999)PIPYTPSPSSSR;TVS(0.026)S(0.974)PIPYTPSPSSSR 376.67 1.3448999999999995e-104 4638538000.0 2493790.0 2517580.0 2368190.0 2265450.0 2279780.0 2574830.0 2518260.0 2378580.0 2406350.0 2481550.0 True False 2480363.7117261165 2601376.128390749 2701610.567323512 2552255.7377181766 2570096.469685277 2396838.062597865 2396442.143112595 2556081.7177845053 1813337.2859380015 2323175.354438157 1.06766099553685 1.1197502260951253 1.1628956730116815 1.0986065829436371 1.1062860428402042 1.031707769290417 1.0315373475938743 1.1002534582253587 0.780542580427186 1.0 21.14766662292438 1.2575302918442504 24.999677745537763 0.8902713028960466 1.089782123417567 0.6261956055913792 0.06167561545788438 123.18346597474952 162341.48295277992 0.03970385808905712 0.0144469057015697 18.09382109438722 -1.2575302918442504 0.19951082052152047 TVSS(ph)PIPYTPSPSSSRPIS(ph)PGLSYASHT(ph)VGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 T(0.069)VS(0.216)S(0.715)PIPY(0.032)T(0.098)PS(0.094)PS(0.041)S(0.04)S(0.039)RPIS(0.433)PGLS(0.155)Y(0.174)AS(0.142)HT(0.431)VGFT(0.314)PPT(0.002)S(0.002)LT(0.002)R 74.686 0.0024246 283490000.0 26660.0 31182.0 27878.0 23543.0 31072.0 39608.0 32880.0 32163.0 42972.0 38656.0 True False 26516.46552220447 32219.874020082956 31802.980080080106 26523.541386081837 35028.835021827064 36869.9921872031 31289.4687862024 34563.16638040475 32382.126395299056 36188.94098493335 0.7327228926992958 0.8903237603304598 0.8788038338375453 0.7329184182848694 0.9679430806336864 1.0188193183810847 0.8646141040498874 0.9550753749548663 0.8948072398355288 1.0 15.143261269571601 3.218985837164708 24.999889784045717 0.9457821265528938 0.8195310050709683 0.5329897257405714 0.0644984231949796 203.17784867040672 259487.62665140253 0.018297341809606 0.02189869157190754 1655.7159678147755 -3.218985837164708 -0.12625112148192552 TVSS(ph)PIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 3 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 T(0.128)VS(0.418)S(0.453)PIPY(0.001)T(0.008)PS(0.057)PS(0.046)S(0.043)S(0.04)RPIS(0.734)PGLS(0.031)Y(0.003)AS(0.025)HT(0.01)VGFT(0.001)PPT(0.001)SLTR;T(0.023)VS(0.137)S(0.839)PIPYT(0.009)PS(0.081)PS(0.196)S(0.167)S(0.143)RPIS(0.405)PGLSYASHTVGFTPPTSLTR;T(0.019)VS(0.133)S(0.848)PIPYTPSPS(0.002)S(0.001)S(0.001)RPIS(0.996)PGLSYASHTVGFTPPTSLTR 182.74 2.2440000000000003e-23 4215130000.0 566240.0 545780.0 535590.0 524400.0 529960.0 678030.0 653460.0 511680.0 742670.0 873280.0 True False 563191.4267551783 563945.9573690228 610996.416568266 590788.9862320564 597447.2646809823 631159.38201094 621849.6433403837 549864.1598583937 559648.9297681454 817546.5227473781 0.6888799732919962 0.6898028939978528 0.7473536973957187 0.7226365347952317 0.730780754437376 0.7720164717842831 0.7606290602896187 0.672578433837094 0.6845468902337647 1.0 19.640941304408027 -1.1270360752366453 4.172242925330949 1.0000603658727762 0.7192403932715772 0.8703281647023053 0.03256179804341464 50163.71434932849 19570357.23544308 2548.0691602877896 0.008241755247683488 0.07463867562471599 1.1270360752366453 -0.28081997260119906 TVSS(ph)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 T(0.001)VS(0.123)S(0.877)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR;T(0.001)VS(0.124)S(0.875)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 208.35 3.2904e-31 3091700000.0 298370.0 362510.0 361140.0 352870.0 369790.0 398880.0 405690.0 347770.0 382850.0 416500.0 True False 296763.6090720233 374575.926208077 411985.3729148478 397543.3058194236 416880.56458295014 371306.3644625219 386065.2248136999 373722.36334027787 288501.7474271672 389918.6134164102 0.7610911581568873 0.960651565017882 1.0565932446904542 1.0195545740589476 1.0691476380937632 0.9522663235006646 0.990117454078564 0.9584624854550462 0.7399024757996465 1.0 18.572813500274158 -0.10702271364707494 8.437112718679927 0.9999999984298865 0.9573029582398164 0.012202332613848954 0.10635779888189875 0.0 0.0 0.10140995721222748 0.02390255614153457 0.7815869264409269 0.10702271364707494 -0.042697040190070146 TVSS(ph)PPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 T(0.095)VS(0.141)S(0.764)PPT(0.534)S(0.465)PRPGSAATVSASTSNIIPPR;T(0.029)VS(0.153)S(0.818)PPT(0.52)S(0.479)PRPGSAATVSASTSNIIPPR 90.363 0.0069186 635710000.0 208498.0 203446.0 191575.0 193660.0 219331.0 263200.0 227440.0 217210.0 284580.0 238810.0 True False 207375.46993430544 210217.57712429608 218547.09480024912 218177.33614359278 247261.50277331212 245005.60350615648 216437.85829482574 233419.31317003132 214449.07217663116 223568.9413444725 0.9275683316618817 0.9402807736178131 0.9775378166840905 0.9758839256989083 1.1059742971736597 1.0958839006561945 0.9681034270379298 1.0440596612674453 0.9592077991111049 1.0 17.770360254386325 3.7390601795335323 2.1453294579480113 1.0299952172034441 0.939208792317237 0.36707998578551915 0.04702762520287515 0.33814027605524677 3.030030978131876 0.013682380668232737 0.02777420761807671 5483.529440997598 -3.7390601795335323 -0.09078642488620714 TVSS(ph)PPTS(ph)PRPGSAATVSASTSNIIPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 T(0.007)VS(0.212)S(0.781)PPT(0.21)S(0.79)PRPGS(0.001)AATVSASTSNIIPPR;T(0.001)VS(0.133)S(0.865)PPT(0.06)S(0.941)PRPGSAATVSASTSNIIPPR;T(0.011)VS(0.113)S(0.876)PPT(0.051)S(0.95)PRPGSAATVSASTSNIIPPR;T(0.016)VS(0.113)S(0.87)PPT(0.052)S(0.948)PRPGSAATVSASTSNIIPPR 164.14 4.2999e-12 15647900000.0 1687750.0 1732490.0 1662700.0 1672840.0 1715260.0 1763840.0 1769190.0 2023800.0 1910740.0 2020870.0 True False 1678663.341526654 1790154.8823376792 1896793.7075525215 1884621.372479849 1933688.1938574617 1641909.8924327479 1683607.5207378785 2174826.232648173 1439863.7296042487 1891896.3464461497 0.8872913913491903 0.9462224955930658 1.0025885990612389 0.9961546656718449 1.0220899244770023 0.8678646139980177 0.889904737064727 1.1495483020163844 0.7610690365299209 1.0 20.851401617533956 4.648940593332026 3.35122170444995 0.972178548305576 0.8833045435117409 0.0373660385282818 0.09926481893506327 0.8102342684665009 14.774944615378494 0.023576977835544365 0.15827281768324952 44559.52917350889 -4.648940593332026 -0.08887400479383512 TVSS(ph)PPTSPRPGSAATVSASTSNIIPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 TVS(0.139)S(0.681)PPT(0.139)S(0.039)PRPGS(0.001)AATVSASTSNIIPPR;TVS(0.172)S(0.814)PPT(0.01)S(0.004)PRPGSAATVSASTSNIIPPR;TVS(0.034)S(0.966)PPTSPRPGSAATVSASTSNIIPPR;TVS(0.215)S(0.765)PPT(0.017)S(0.003)PRPGSAATVSASTSNIIPPR 181.92 8.1208e-18 3782640000.0 259369.0 293616.0 320051.0 326277.0 319718.0 315095.0 324101.0 298722.0 353835.0 331806.0 True False 257972.58612260508 303388.83106538013 365111.39886683866 367583.6347460655 360432.1921829467 293313.2243038467 308422.9964439473 321014.1525195804 266637.10539608647 310629.8570065917 0.8304822614560544 0.9766892145816559 1.1753905512665863 1.1833493350842486 1.160326942349583 0.9442531607566058 0.9928955297989995 1.033429804890804 0.8583756499312567 1.0 18.24483697925915 2.7155090528823624 24.670157920237077 0.97554334377044 1.0730080147157914 0.16952948817068658 0.10832149399247468 1370.6644745101885 1466906.1151691687 0.03782122197575442 0.0356798438191191 519.4085004809642 -2.7155090528823624 0.09746467094535138 TVSSDGCS(ph)TPSREEGGCSLASTPATTLHLLQLSGQR ddPTM_BT-474_Trastuzumab_2h_R1 3 TVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR 36 1 Q12888;Q12888-2;A6NNK5;Q12888-3;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.021)VS(0.021)S(0.02)DGCS(0.419)T(0.419)PS(0.092)REEGGCS(0.004)LAS(0.001)T(0.001)PATTLHLLQLSGQR;TVS(0.001)S(0.009)DGCS(0.482)T(0.482)PS(0.025)REEGGCSLASTPATTLHLLQLSGQR;T(0.005)VS(0.012)S(0.012)DGCS(0.317)T(0.317)PS(0.317)REEGGCS(0.015)LAS(0.004)T(0.001)PATTLHLLQLSGQR 189.68 1.4925e-23 2728140000.0 627266.0 692045.0 683072.0 696614.0 696059.0 735478.0 761510.0 695610.0 793530.0 816730.0 True False 623888.8695518044 715079.2994749628 779242.600231741 784805.2609745578 784697.9877850773 684636.1369889858 724672.8520492999 747519.9504360085 597975.1642572295 764605.5921622686 0.8159616878912382 0.9352263530439952 1.0191432134678478 1.0264184162649994 1.0262781175402973 0.8954108418862947 0.947773413479699 0.9776543071337699 0.7820700899743408 1.0 19.54435622621187 -0.09394385225710344 7.784637077560248 0.9999999987806778 0.9457245042960725 0.04155862160659152 0.08104149612226129 0.0 0.0 0.07748499959088812 0.01826338968639081 0.8054825712463176 0.09394385225710344 -0.054275494484605336 TVSSEDVAEMHNILK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSSEDVAEMHNILK 15 0 P78356;P78356-2 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 ; 236.55 1.0360999999999999e-17 1042670000.0 1112820.0 1133090.0 1096890.0 1053800.0 898030.0 1246410.0 1254940.0 1140350.0 1561130.0 1330290.0 False True 1106828.7007659252 1170804.2156826302 1251322.5776612065 1187210.9719514528 1012388.7974591719 1160248.610433544 1194233.7578636508 1225448.7075799685 1176410.429570259 1245389.7532814313 0.8887408121430125 0.9401106863114311 1.004763829447081 0.9532846796140041 0.8129092075727026 0.9316349418938513 0.9589237061867649 0.9839881084223466 0.9446122601142163 1.0 20.248165883609538 2.1776378829772907 3.8027548927540735 0.9733738398420662 0.9227635510421041 0.21293216772513424 0.04785675550724848 0.4123515568616897 12.046825298422311 0.020309056560504548 0.014750375857761205 150.53513728671942 -2.1776378829772907 -0.0506102887999621 TVSSPIPYT(ph)PSPS(ph)S(ph)SRPISPGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 T(0.036)VS(0.039)S(0.04)PIPY(0.187)T(0.394)PS(0.291)PS(0.356)S(0.158)S(0.155)RPIS(0.255)PGLS(0.24)Y(0.278)AS(0.225)HT(0.212)VGFT(0.105)PPT(0.01)S(0.01)LT(0.009)R 46.037 0.076086 366420000.0 21074.0 27918.0 32394.0 30639.0 29349.0 35038.0 34007.0 26760.0 34090.0 36040.0 True False 20960.539925541525 28847.233753212633 36954.79362630447 34517.89425851255 33086.42118484821 32615.905530580247 32361.951490644322 28756.96708452664 25688.976282596686 33739.89634460365 0.6212390136430858 0.8549888078665201 1.095284740915187 1.0230586930665935 0.9806319748857213 0.9666865955205232 0.9591597780892496 0.8523134389867805 0.7613827861301469 1.0 15.042167920947424 4.6589340836901965 3.529119895262936 0.9495601522675282 0.6065433373303266 0.5673249173739952 0.08766854494404458 0.19215374174913633 3.968543741739363 0.023082030361843697 0.15007764392823994 45596.7704872733 -4.6589340836901965 -0.3430168149372016 TVSSPIPYT(ph)PSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 TVS(0.001)S(0.003)PIPY(0.197)T(0.673)PS(0.126)PS(0.038)S(0.029)S(0.026)RPIS(0.908)PGLSYASHTVGFTPPTSLTR 180.62 3.0069e-22 927780000.0 262240.0 306080.0 283960.0 307850.0 260110.0 356330.0 319940.0 258550.0 310560.0 310790.0 True False 260828.12897760284 316267.6877707329 323939.0997754338 346823.7784354285 293233.46670724294 331697.74581059563 304463.2799105106 277844.3138902975 234026.6492907956 290955.1161192946 0.8964548637483337 1.0869982009220278 1.1133645082309376 1.192018147201877 1.0078305912552306 1.1400306350846092 1.0464269677446658 0.9549387465535353 0.8043393510731128 1.0 18.15043708892282 1.6634222201832292 3.1044872404291333 0.8972831993736289 1.077910949775301 0.3862498706889166 0.0873351718449592 0.19387828485938502 4.361232426015571 0.05227141270777809 0.02279413443778468 46.070425163616214 -1.6634222201832292 0.18062775040167212 TVSSPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFT(ph)PPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 TVSSPIPYT(0.001)PS(0.023)PS(0.027)S(0.03)S(0.033)RPIS(0.54)PGLS(0.265)Y(0.015)AS(0.04)HT(0.03)VGFT(0.943)PPT(0.021)S(0.017)LT(0.016)R 88.381 0.0071655 133250000.0 18527.0 21678.0 21154.0 23837.0 22063.0 30426.0 28912.0 20418.0 24862.0 26693.0 True False 18427.25269054321 22399.53912537226 24132.299326135846 26854.761755937318 24872.5922723536 28322.72223510001 27513.416105434422 21941.694840503194 18735.093233731837 24989.429886972965 0.7374018844723372 0.8963605503080796 0.9657002754879197 1.0746448349322588 0.9953245186005515 1.1333880910130205 1.1010021529053455 0.8780390324927516 0.7497207146569789 1.0 14.609030367463898 4.640233191677722 1.9546595642133426 0.992137702996909 0.6915405390164421 0.34798019128529545 0.10529318971920691 0.7383142625319956 3.533885925799862 0.02932692207074408 0.3716552079372865 43675.02795947945 -4.640233191677722 -0.3005971639804669 TVSSPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 TVSSPIPYTPSPS(0.004)S(0.003)S(0.003)RPIS(0.99)PGLSYASHTVGFTPPTSLTR;TVSSPIPYTPSPS(0.006)S(0.005)S(0.005)RPIS(0.984)PGLSYASHTVGFTPPTSLTR 267.45 2.0540999999999996e-63 13604700000.0 2591200.0 3210300.0 3266300.0 3178000.0 3011800.0 3648600.0 3339900.0 2888500.0 3321700.0 3485400.0 True False 2577249.2671093876 3317152.8948326674 3726166.6488114577 3580334.474152316 3395334.87766281 3396380.869880563 3178336.277342989 3104054.5375057976 2503111.543499598 3262958.7879989347 0.7898503887295278 1.0166088848664154 1.1419594579362105 1.0972662257705121 1.0405693415898327 1.040889907151862 0.9740657127000241 0.9513005646661605 0.7671293773939063 1.0 21.63774933526298 1.6893268905165253 2.3414985859974062 0.8822498178762311 1.0282211416410871 0.20030817927696365 0.10250429577744663 0.37775501940573347 4.4970279251688465 0.06961869112826868 0.028796016154348996 48.90203031227508 -1.6893268905165253 0.145971323764856 TVSSS(ph)GCEGKR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSSSGCEGKR 11 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 TVS(0.246)S(0.246)S(0.508)GCEGKR 99.752 0.0048099 16453000.0 50421.0 45004.0 38707.0 41305.0 38619.0 50999.0 46017.0 41064.0 64419.0 51258.0 True False 50149.538938299724 46501.93093450751 44156.60915272477 46534.208764902956 43536.90073725346 47473.55916873283 43790.98190798894 44128.404198766904 48543.80062037534 47986.670555818346 1.0450722743926466 0.969059332433081 0.9201848897051853 0.9697319740233722 0.9072707114908318 0.9893072100826694 0.9125655395710575 0.9195971232769007 1.0116101004321385 1.0 15.550346098016322 4.697383842199877 3.3608497494707854 0.9473512496674508 1.0537844017273035 0.34222968632532935 0.036799249986714015 0.2636966718518248 5.023116080876028 0.008364824065897525 0.06772970884744242 49817.719407403776 -4.697383842199877 0.10643315205985271 TVSTLHHVLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVSTLHHVLQR 11 0 O00764;F2Z2Y4;O00764-3;O00764-2 O00764 PDXK Pyridoxal kinase 0 168.22 1.0595e-05 515530000.0 139710.0 216120.0 199580.0 218380.0 232580.0 212780.0 204490.0 161220.0 198450.0 199970.0 False True 138957.81688324007 223313.4235527009 227679.12921954205 246026.8856089941 262197.6843903369 198071.01943024315 194598.03747233952 173251.0550585719 149544.6565937611 187207.74339706966 0.7422653270730849 1.1928642453589684 1.216184358018953 1.3141918231831278 1.400570722302938 1.0580279204056873 1.039476433726328 0.9254481247130067 0.7988166188007259 1.0 17.51428058419526 2.08534026661807 1.9301323822096914 0.9012483695405957 1.1823748742720492 0.2973906659427509 0.1703827365449535 0.4117623934484126 2.9376188321032184 0.09720303515894516 0.054019755778313486 121.71392470550207 -2.08534026661807 0.2811265047314535 TVT(ph)PASSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVTPASSAK 9 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 T(0.026)VT(0.968)PAS(0.004)S(0.002)AK;TVT(1)PASSAK 127.83 0.0048558 306190000.0 902050.0 666950.0 627880.0 623750.0 579900.0 716890.0 756080.0 714380.0 1094490.0 846810.0 True False 897193.4630271756 689149.0275702104 716280.046369206 702716.686045472 653746.8276634115 667333.0816775414 719505.5218939146 767690.6631481366 824767.6049146157 792765.860809485 1.1317256549254793 0.8692970543238675 0.9035202974530462 0.8864113867465677 0.8246404896849082 0.841778278640978 0.9075889332056188 0.9683699829912651 1.0403672076298216 1.0 19.596535310950454 1.567848995193212 2.9753565179833856 1.018297043717414 0.9006685912521573 0.2311705147778893 0.08054200310758317 0.3039317407712695 6.104820756892334 0.055079476404563746 0.0213605952944477 36.969961235091425 -1.567848995193212 -0.11762845246525666 TVTAMDVVYALKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVTAMDVVYALKR 13 1 P62805 P62805 HIST1H4A Histone H4 0 ; 200.21 1.7910999999999994e-07 1094190000.0 561470.0 808070.0 759060.0 727050.0 825540.0 872180.0 743530.0 811510.0 1397250.0 878630.0 False True 558447.1079051817 834966.1214613706 865929.0501322042 819094.4554538839 930667.6256410632 811888.2494908805 707562.6133395707 872068.9969642826 1052916.459690765 822555.0811670116 0.678917583382838 1.0150884002524798 1.0527307774983958 0.9957928340698863 1.1314350211303361 0.9870320761243158 0.86020089054183 1.0601952585680006 1.280055869567938 1.0 19.649752764428516 4.738671349875771 4.529353461016857 1.0384375560692296 0.6553615776850209 0.5310281681701101 0.10267298159865744 0.1557290290588941 8.256499957981369 0.02480411428286904 0.1905697266843815 54786.22160858701 -4.738671349875771 -0.3830759783842087 TVTCVTVVEPEAPPS(ph)PDVLQAATHR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVTCVTVVEPEAPPSPDVLQAATHR 25 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR 233.33 1.5028e-38 5093230000.0 1683130.0 1872660.0 1840510.0 1876430.0 1694620.0 1838280.0 1821780.0 1706170.0 2088980.0 1860170.0 True False 1674068.2150933242 1934990.356053126 2099637.8100002953 2113985.8456052993 1910419.8122003288 1711204.0304456605 1733653.5415245693 1833493.0691557094 1574178.8698978808 1741452.3580283404 0.9613057786942227 1.1111359705779766 1.2056820276022306 1.2139211479771623 1.0970267451722264 0.9826304018922879 0.9955216595689125 1.0528528447551542 0.903945986601755 1.0 20.731859574102714 2.8371320538256226 4.438667709464458 0.9962392523961369 1.130638673353938 0.44053198220179424 0.0733670922254523 0.23101774282488222 7.750278663420985 0.023936937181964952 0.02542959379649287 687.2773853613796 -2.8371320538256226 0.1343994209578011 TVTEGGAAHR ddPTM_BT-474_Trastuzumab_2h_R1 3 TVTEGGAAHR 10 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 0 ;; 167.67 1.2744e-05 390380000.0 484690.0 613360.0 545220.0 530510.0 558680.0 557480.0 615770.0 522760.0 681830.0 594600.0 False True 482080.4828941214 633775.3168160503 621982.2368628056 597672.5116055842 629824.5864442054 518942.7197667633 585982.852630166 561771.0057214934 513802.1325539128 556652.1189373287 0.8660354761865138 1.1385482876198387 1.11736256039085 1.0736912539676757 1.131450981712898 0.9322567939873216 1.0526913177817967 1.0091958453224554 0.9230219648400545 1.0 19.086416467928892 2.7389814797464913 24.999999056929916 0.9918624653404243 1.072825986637743 0.1995911592532288 0.08053667000622793 64.67197662846824 3841680.896341912 0.024626154361745888 0.024692565713788313 548.2535844444749 -2.7389814797464913 0.08096352129731865 TVTLPHEAERPDGS(ph)EDAEDDDDDDALSDWNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLR 32 1 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 1 T(0.008)VT(0.008)LPHEAERPDGS(0.983)EDAEDDDDDDALSDWNLR 78.542 0.00083738 487450000.0 40154.0 49761.0 49889.0 52205.0 42335.0 52993.0 53825.0 29509.0 40061.0 36069.0 True False 39937.81532552878 51417.2648038403 56912.93755703841 58814.14764730076 47726.11131079585 49329.718642103966 51221.27911853238 31711.111423665814 30188.5033398975 33767.04553977549 1.182745327200288 1.5227054656965455 1.685458015271087 1.7417617297320647 1.4133931633011079 1.4608834694760786 1.5169014137821706 0.9391141841625464 0.8940226441883199 1.0 15.04332833527688 1.7262680292243615 4.9254950891855955 0.9331425941533732 1.5168540446314007 0.7551345537050936 0.1455514113709049 0.08066472073173744 4.685124105728196 0.07951095486354165 0.040076338784309176 53.24367566087315 -1.7262680292243615 0.5837114504780275 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLR ddPTM_BT-474_Trastuzumab_2h_R1 6 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLR 32 1 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 0 ;;;;; 413.73 1.2945999999999989e-186 10500630000.0 1785434.0 1948564.0 1815079.0 1824071.0 1804955.0 2040750.0 2056097.0 1730133.0 2026320.0 2095489.0 False True 1775821.4217243642 2013420.7748081873 2070626.346250509 2054998.2015737854 2034805.3204435492 1899677.755908776 1956635.7330567031 1859244.3098973618 1526960.5872969015 1961753.0979816085 0.9052216731817352 1.0263375023491683 1.055497936198453 1.0475315184607656 1.037238234789639 0.9683572096118008 0.9973914327291388 0.9477463355660225 0.7783653248046084 1.0 20.903712047817038 1.5510343906963948 3.822076790240809 0.8821726858416161 1.0090671952694354 0.3309629705902476 0.06527124414303107 0.17873833869661107 5.8517067124878235 0.039358712099082094 0.01627781975320296 35.56594812408027 -1.5510343906963948 0.12689450942781932 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLRK ddPTM_BT-474_Trastuzumab_2h_R1 3 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLRK 33 2 O14787-2;O14787;A0A075B780 O14787-2 TNPO2 Transportin-2 0 ;; 352.24 4.907399999999998e-132 850390000.0 390297.0 414167.0 363169.0 404045.0 378983.0 452999.0 471069.0 397490.0 651145.0 518185.0 False True 388195.6843180734 427952.2982257616 414300.0384784635 455197.0555723325 427244.23864177015 421684.2453749445 448281.59281166585 427152.72221332235 490679.0396459785 485113.9896595022 0.8002153980151036 0.8821685363601617 0.8540261614991923 0.9383300941121733 0.8807089627360564 0.8692477528238703 0.9240747584424669 0.8805203134074481 1.0114716336883676 1.0 18.887964258837343 7.999999995337928 0.04659925869354161 1.2498898693180802 0.2770317594340818 0.6088272244230581 0.038754139517053615 394.987203525563 1.393098982909535 7.205019473977258 28.388496298537433 99999998.92651835 -7.999999995337928 -0.9728581098839983 TVTNAVVTVPAYFNDSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVTNAVVTVPAYFNDSQR 18 0 P11142;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ; 239.98 1.4357e-23 388650000.0 678510.0 772870.0 698430.0 667770.0 704560.0 690420.0 695180.0 638540.0 922100.0 771580.0 False True 674856.9775495472 798594.5107402198 796762.873137612 752309.6135319985 794281.5397457024 642692.8904738626 661551.4875545069 686191.0972404211 694860.8105069632 722337.1038171268 0.9342687423687983 1.1055703860705999 1.1030346758143652 1.0414937977801286 1.0995995298433259 0.8897409354685072 0.9158486862416402 0.9499596429621359 0.9619619521619925 1.0 19.462312752690913 2.7416484092319147 24.99980080627361 0.9389558762316372 1.0612222380090037 0.5234658344485595 0.053876769027061414 198.96356780351266 1610878.8406063186 0.016292137013134537 0.016632346150708202 551.6306761062218 -2.7416484092319147 0.1222663617773665 TVVAY(ph)NWKTGNVVK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVVAYNWKTGNVVK 14 1 C9JWF1;Q8NA23-2;Q8NA23 C9JWF1 WDR31 WD repeat-containing protein 31 1 TVVAY(0.706)NWKT(0.294)GNVVK 40.751 0.089174 1589500000.0 872520.0 716290.0 652230.0 552060.0 654820.0 809690.0 725290.0 445950.0 1033500.0 734040.0 True False 867822.4492660859 740131.2796435516 744058.3147152106 621950.7393960133 738207.4455777801 753718.0361052441 690204.9518231371 479229.0534882166 778807.773190486 687192.9387567389 1.262851231906049 1.0770356298808716 1.0827502332334087 0.9050598519263586 1.074236075407492 1.0968070153177965 1.0043830675440983 0.6973719118174176 1.1333174851876324 1.0 19.390355686592795 7.999999988006405 0.4527025736971925 0.9445857453121422 8.001411737283137 0.29896740692677115 0.11958780102744776 103.09168689447887 1.234820029476831 0.07566935432925796 673.5071795444272 99999997.23837283 -7.999999988006405 7.056825991970994 TVVLHIDGLDDTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TVVLHIDGLDDTSR 14 0 Q9NVT9;E5RJ86 Q9NVT9 ARMC1 Armadillo repeat-containing protein 1 0 ;;; 166.03 3.8712e-06 1063150000.0 670520.0 738850.0 651614.0 708940.0 719790.0 778410.0 733910.0 642013.0 819120.0 748950.0 False True 666909.9948217748 763442.1756057427 743355.587269579 798691.7313107444 811450.9899704214 724600.3488800427 698407.9694915395 689923.2701359564 617258.8516456614 701151.369791645 0.9511640760538692 1.0888407389585621 1.0601927334043082 1.1391145560310103 1.1573121367666346 1.033443533163696 0.9960872923903427 0.9839861973613128 0.8803503469287763 1.0 19.419366412072495 2.136493513768713 1.8824459416914663 0.9530034523665237 1.0817759123752637 0.4504077110068978 0.05989244824637102 0.31776283411834044 2.1927971106361803 0.03309621429181416 0.019175407825814457 136.92839378466766 -2.136493513768713 0.12877246000874 TVVLHIDGLDDTSRR ddPTM_BT-474_Trastuzumab_2h_R1 5 TVVLHIDGLDDTSRR 15 1 Q9NVT9;E5RJ86 Q9NVT9 ARMC1 Armadillo repeat-containing protein 1 0 ;;;; 166.9 8.7065e-07 1241486000.0 324865.0 421651.0 418168.0 442334.0 434704.0 442117.0 405519.0 371350.0 468317.0 412787.0 False True 323115.96293589467 435685.3986415879 477042.41961858654 498333.4390464737 490060.9777075283 411554.49242147256 385902.49673698307 399062.02267709194 352906.5504762934 386442.5802552695 0.836129296938387 1.1274259641724533 1.2344457986577726 1.289540709300961 1.268134006826609 1.0649822598472847 0.9986024223367682 1.0326554139388224 0.9132185957437108 1.0 18.559894541018977 2.490494007863265 5.114023243802522 0.9969102795544389 1.1631221844095778 0.28509249205459375 0.1219618109534501 0.2495077918802662 19.299219712000568 0.043909581196221056 0.038964909050346566 309.38126285722024 -2.490494007863265 0.16621190485513893 TVVSGLVNHVPLEQMQNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVVSGLVNHVPLEQMQNR 18 0 Q12904;Q12904-2;A0A5F9ZHC5 Q12904 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 ; 137.69 3.6111e-06 2487400000.0 1259430.0 1443570.0 1498820.0 1471600.0 1467520.0 1496310.0 1501550.0 1398790.0 1613270.0 1501550.0 False True 1252649.3688158263 1491618.354793509 1709840.828023016 1657904.4091134518 1654399.973327486 1392873.6116348668 1428914.2900219655 1503174.812711699 1215701.225210466 1405719.7934583686 0.8911088644018047 1.0611064607149137 1.2163454167607934 1.1793989220530612 1.1769059388836742 0.9908614918255526 1.0165000853452688 1.0693274859661543 0.8648247188862463 1.0 20.422877615458784 2.7194844220483114 23.85706309599068 1.0012561053428684 1.1128582012754962 0.25776241118571097 0.09730346476946637 713.1191073754732 891839.1182366884 0.03307178551068222 0.0312335158375489 524.1847983935143 -2.7194844220483114 0.11160209593262782 TVVTGIEMFHK ddPTM_BT-474_Trastuzumab_2h_R1 1 TVVTGIEMFHK 11 0 P49411 P49411 TUFM Elongation factor Tu, mitochondrial 0 169.82 1.6437000000000002e-05 466300000.0 555420.0 571420.0 649960.0 526920.0 668920.0 1154500.0 626280.0 533550.0 915830.0 780020.0 False True 552429.6804329625 590439.3692693154 741468.7184464056 593628.017973675 754102.9970005333 1074692.132400675 595984.4437780669 573366.2103120034 690135.9679932677 730238.4557912807 0.7565058729129158 0.808556937239795 1.0153788979011737 0.8129235228106747 1.0326804772057547 1.4717002697922104 0.8161504492833958 0.7851766854577772 0.9450830239355742 1.0 19.478008120364507 4.336778350737681 4.902890325179504 0.9712325859156362 0.7696088934902927 0.1592355413403227 0.18494146604417624 0.4188572100576385 16.27396971905044 0.04914130953063601 0.14248555428594262 21715.925883473778 -4.336778350737681 -0.2016236924253435 TVWDWELMNDIKPIWQR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVWDWELMNDIKPIWQR 17 1 P14625 P14625 HSP90B1 Endoplasmin 0 ; 181.08 7.5109e-10 680380000.0 721950.0 728240.0 669490.0 622910.0 650320.0 794690.0 827530.0 719410.0 1046430.0 723580.0 False True 718063.1014161861 752479.0281696244 763748.3726886011 701770.3421315989 733134.3972513707 739754.9507990411 787499.2124284095 773096.0272899598 788551.34794361 677400.5049119948 1.0600274080242589 1.1108332850554687 1.1274694470265036 1.035975522667746 1.08227613049479 1.092049600546352 1.1625311860827714 1.1412687497042793 1.164084381729322 1.0 19.369649536606584 2.382948537097599 7.983723879931557 1.131184232061522 1.0849218636981235 0.06494770323579424 0.04988266290425444 0.4313105637522747 32.185536495178546 0.0163526896375526 0.013657509417891317 241.5174624820777 -2.382948537097599 -0.046262368363398476 TVWDWELMNDIKPIWQRPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVWDWELMNDIKPIWQRPSK 20 2 P14625 P14625 HSP90B1 Endoplasmin 0 ; 300.74 4.3171e-55 4296400000.0 4122000.0 4651800.0 4346100.0 4014300.0 4126800.0 5231200.0 5068700.0 4857300.0 7345500.0 4782800.0 False True 4099807.6099972515 4806632.350927519 4957993.103021606 4522509.968404549 4652323.518540032 4869579.456920241 4823507.61668565 5219776.390869627 5535299.949657199 4477557.609238907 0.9156348098208243 1.0734942507517056 1.1072985622320923 1.010039482032099 1.0390315266833232 1.0875526083399674 1.0772631058354039 1.165764205936567 1.2362319891174078 1.0 22.094280563685853 2.1888228850622236 1.6817678176052622 1.1474899109708656 1.0363747582205247 0.24990140666131955 0.07340570841861133 0.46435744952919145 2.5768715077347615 0.039302330837699156 0.02311420895910416 154.46243789345039 -2.1888228850622236 -0.1111151527503409 TVWIAR ddPTM_BT-474_Trastuzumab_2h_R1 5 TVWIAR 6 0 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ;;;; 142.53 0.026789 3306998000.0 1866168.0 2229960.0 1990405.0 2029547.0 1810813.0 2136871.0 1793125.0 1649693.0 2548343.0 2015508.0 False True 1856120.7588387548 2304182.8705607112 2270636.7230896014 2286487.442105857 2041409.3020204634 1989154.1374232715 1706384.6933472974 1772801.4686313167 1920338.0136967208 1886876.553876786 0.9837001551718685 1.2211624898441424 1.2033838241427823 1.2117843307809557 1.0818987059996976 1.0542047031833353 0.904343577666144 0.9395428996077724 1.0177337832468079 1.0 20.847568609148883 2.685363203833958 2.054971336738987 0.9580143834102083 1.160062454880218 0.5603921219572607 0.07263101194898597 0.2158661015663959 1.8014848063254918 0.026783689084882756 0.02551811145285279 484.5774540444569 -2.685363203833958 0.2020480714700098 TVWSSGDDKEQLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TVWSSGDDKEQLVK 14 1 K7EM91;O43291-2;O43291;K7ES27 K7EM91 SPINT2 Kunitz-type protease inhibitor 2 0 ; 201.48 1.6213e-08 1172440000.0 729360.0 791740.0 677730.0 604010.0 767290.0 910700.0 874720.0 916180.0 1124650.0 785660.0 False True 725433.2067995131 818092.5872830634 773148.4930652376 680477.6040694601 864999.8334158635 847745.4525572076 832406.451845102 984550.0038677749 847495.0770379094 735518.5061626324 0.9862881772809 1.1122664901407293 1.0511611694162932 0.925167209754744 1.176040882953122 1.1525820838690908 1.1317274070885806 1.338579513117075 1.152241677044245 1.0 19.488402115594923 3.1506084038283046 9.21909519641116 1.1846799256512441 1.0279088600250421 0.3395996002035512 0.0909180185608135 0.2984428969851767 28.42431240589104 0.02666723754233599 0.0319156039660942 1414.5177574264771 -3.1506084038283046 -0.15677106562620202 TVYCNVHK ddPTM_BT-474_Trastuzumab_2h_R1 4 TVYCNVHK 8 0 Q13263;Q13263-2;M0R3C0;M0R2I3 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;; 106.42 0.0041983 2322370000.0 3110590.0 3320400.0 3292340.0 2550070.0 2132760.0 2819810.0 3324750.0 2715410.0 5773900.0 3328530.0 False True 3093842.9290590365 3430917.506775812 3755872.854467716 2872908.600535431 2404354.3441410908 2624883.1718187504 3163919.140721605 2918047.6827725875 4350999.711296129 3116100.3657020936 0.9928572786396621 1.1010292044950825 1.2053119006715545 0.9219563760386554 0.7715907904010537 0.8423615621338736 1.0153457107947605 0.9364421361040204 1.3962963963504424 1.0 21.571310270878055 -0.36624526766897336 7.04277534037766 0.9999957556374802 1.0071096196064395 0.0 0.17166780471125812 0.0 0.0 0.1676567973473099 0.03951708610543388 0.4302835393705343 0.36624526766897336 0.0071138639689593 TVYGGGCSEMLMAHAVTQLANR ddPTM_BT-474_Trastuzumab_2h_R1 2 TVYGGGCSEMLMAHAVTQLANR 22 0 P78371;P78371-2;F5GWF6 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 253.31 5.0525e-37 1753720000.0 323600.0 371620.0 345290.0 372310.0 365890.0 347140.0 394790.0 332170.0 436550.0 398000.0 False True 321857.77355534 383989.1470509661 393903.83068551746 419444.40782619565 412483.922700062 323143.028879663 375692.49945574376 356958.2121250826 328968.10197030165 372599.29925505666 0.8638174419512733 1.0305686237700429 1.0571781306971195 1.12572516551909 1.1070442792693043 0.8672668722827114 1.0083016801343196 0.9580216947234053 0.8829004848587008 1.0 18.507265435452258 2.7444255606213215 24.99874208258404 0.9476099419497089 1.0425818222082488 0.2631794801895947 0.07782110088384872 701.0971197668739 2988359.7469791374 0.024667367459055747 0.0255482386826418 555.1694512524444 -2.7444255606213215 0.09497188025853986 TVYGNHER ddPTM_BT-474_Trastuzumab_2h_R1 4 TVYGNHER 8 0 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 0 ;;; 132.01 0.00098055 1240050000.0 1064370.0 1231960.0 1137950.0 1220800.0 1093500.0 1264520.0 1319370.0 1064890.0 1407150.0 1232650.0 False True 1058639.5501826252 1272965.043864455 1298163.468761288 1375353.154828555 1232750.7433177102 1177106.7087598986 1255547.0326171494 1144357.4992018524 1060376.7373439705 1153981.2216752395 0.9173802227438274 1.1031072429553803 1.1249433217611102 1.191833219635887 1.068258928449564 1.0200397429787356 1.088013400074627 0.9916604167445495 0.9188856087316716 1.0 20.138188317036832 1.6219189487936683 3.6626078322520397 0.9578115428296129 1.0789663585467777 0.3173469797641849 0.06978391825234574 0.21163256264511432 6.662952494757926 0.04310421659315208 0.018846563716256887 41.871541409860924 -1.6219189487936683 0.1211548157171648 TVYSHLFDHVVNR ddPTM_BT-474_Trastuzumab_2h_R1 1 TVYSHLFDHVVNR 13 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 227.57 5.136e-12 898020000.0 207990.0 240550.0 230090.0 247380.0 273650.0 212300.0 224240.0 121780.0 260760.0 193840.0 False True 206870.2049498614 248556.56133445434 262484.6720218682 278698.2826355572 308497.7054493747 197624.2007004449 213392.65452001273 130867.84198631 196499.19200498427 181468.96524522654 1.1399756684031845 1.369691842341028 1.4464438680584404 1.5357903333991056 1.700002559845365 1.0890247841188003 1.1759181754943409 0.7211582532002806 1.0828253290552836 1.0 17.46936331458523 2.372937120127646 2.2809774015452877 0.9328945173228774 1.435916904701374 0.5775983827523594 0.17739505493404886 0.19996448190994678 2.1324556354381077 0.07459307058678984 0.05730138348239803 236.01364931133273 -2.372937120127646 0.5030223873784966 TWDHFWLNEGHTVYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 TWDHFWLNEGHTVYLER 17 0 P09960-4;P09960;P09960-3;P09960-2 P09960-4 LTA4H Leukotriene A-4 hydrolase 0 ; 231.77 2.0796e-16 823760000.0 499700.0 512310.0 508500.0 517170.0 530730.0 556120.0 548090.0 385210.0 622410.0 503670.0 False True 497009.6707218886 529361.9286520651 580092.3800387675 582643.6689733649 598315.319616835 517676.733365668 521576.7927928727 413956.3262567454 469025.39536670584 471525.34938641865 1.0540465562851116 1.1226584728496727 1.230246434881229 1.2356571491469994 1.2688932215317887 1.0978767823178641 1.1061479376911219 0.8779089539839459 0.9946981556283964 1.0 18.846975807269338 2.0287162485285424 2.4545233208252624 0.948235813688708 1.1791085618784973 0.6284342589243913 0.07133650288704528 0.17950378536805287 2.059275883323621 0.03835580045349796 0.02181420451132463 106.83566276170386 -2.0287162485285424 0.2308727481897893 TWELSLYELHR ddPTM_BT-474_Trastuzumab_2h_R1 1 TWELSLYELHR 11 0 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 0 194.5 4.8532e-07 63844000.0 69602.0 79017.0 78820.0 79052.0 63985.0 70504.0 78228.0 68716.0 99773.0 75952.0 False True 69227.27056550924 81647.03307821487 89917.1708842784 89059.97509461573 72133.11048119234 65630.22442856409 74443.81278001949 73843.9368527778 75185.28103970419 71104.67833422127 0.9735965647733129 1.1482652758014062 1.2645746101491475 1.2525192038138078 1.0144636354606236 0.9230085272318511 1.0469608262638206 1.038524307861726 1.0573886669777537 1.0 16.117656864675954 3.216199114018817 24.869548250183332 1.0150362343838888 1.1664076159023569 0.4346112305413825 0.08161944147328418 212.5580548090559 236397.75663422162 0.024945230741222277 0.02983653696585904 1645.125802633483 -3.216199114018817 0.15137138151846807 TWEQQQEVVSR ddPTM_BT-474_Trastuzumab_2h_R1 4 TWEQQQEVVSR 11 0 Q9UJU6-2;Q9UJU6-3;B4DDD6;Q9UJU6-6;Q9UJU6-4;Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6-2;Q9UJU6 DBNL Drebrin-like protein 0 ;;; 261.35 2.5602e-20 1269370000.0 423702.0 448559.0 413806.0 438977.0 426609.0 482520.0 482590.0 407094.0 513670.0 509010.0 False True 421420.8355097173 463489.01515535836 472066.28793376975 494551.44319067436 480935.12744035205 449164.5281299038 459245.27802717197 437473.4214614455 387082.91132535733 476524.546014614 0.8843633324542178 0.9726445763008903 0.9906442215450796 1.0378299445995538 1.009255727669489 0.94258424227349 0.9637389760255664 0.9180501300934646 0.8123042444774425 1.0 18.86219100441985 1.6966496152095643 3.1949279156601156 0.8954621542742152 0.9761619368665646 0.18940593919209403 0.057172170939725576 0.28648436979584097 6.631703174215869 0.0333973518994304 0.015184173071919719 49.73356772281235 -1.6966496152095643 0.08069978259234944 TWESVKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TWESVKR 7 1 A6NFX8;Q9UKK9;A6NCQ0;A6NJU6;C9JYY9 A6NFX8 NUDT5 ADP-sugar pyrophosphatase 0 ; 92.47 0.025087 1058400000.0 1087100.0 1193870.0 1093050.0 1089200.0 1017650.0 1276180.0 1367120.0 1116910.0 1883880.0 1442380.0 False True 1081247.174388165 1233607.2412403454 1246941.9390390848 1227092.6083218087 1147241.6954158843 1187960.6804045865 1300987.1826944365 1200259.4957540617 1419623.0166986869 1350326.0735163551 0.8007304277051486 0.9135624834881069 0.9234376522049598 0.9087379947617861 0.8496034535039205 0.8797583811079376 0.9634614988264011 0.8888664147826841 1.0513186737199536 1.0 20.36487639722393 1.2438067314338275 24.995828521736318 1.025659359999406 0.8949395746460931 0.6087883923790116 0.04308073082048679 76.14978094563634 362839.9176812262 0.030161506317839582 0.010283334021164632 17.531001682861124 -1.2438067314338275 -0.13071978535331286 TWNDPSVQQDIK ddPTM_BT-474_Trastuzumab_2h_R1 1 TWNDPSVQQDIK 12 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 203.51 2.8887e-07 349560000.0 379140.0 378780.0 354180.0 314050.0 317310.0 405510.0 392740.0 375180.0 637240.0 380940.0 False True 377098.7523664138 391387.46332265425 404045.46541225305 353808.6977997282 357717.54765628104 377478.04816786305 373741.66578750423 403177.836725438 480200.7405785248 356628.0830608575 1.0574006094244213 1.0974667501321402 1.1329603152517407 0.9920943262882408 1.0030549041064656 1.0584641706509905 1.0479871988200278 1.1305274482734355 1.346502879013541 1.0 18.444060788441167 1.5561838777976107 4.727685943641326 1.1919877857481391 1.0567309461390144 0.22767760432026496 0.08712827079974748 0.18383303547146887 8.975456870033238 0.04802905095275558 0.021199158383673436 35.990168321431014 -1.5561838777976107 -0.1352568396091247 TWPDHGVPSDPGGVLDFLEEVHHK ddPTM_BT-474_Trastuzumab_2h_R1 2 TWPDHGVPSDPGGVLDFLEEVHHK 24 0 Q06124;Q06124-1;Q06124-3;A0A0U1RRI0 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 117.31 0.00025299 60236000.0 78471.0 84418.0 77298.0 76893.0 77289.0 95887.0 96242.0 48690.0 109239.0 84039.0 False True 78048.52085494767 87227.80209824136 88180.88651373962 86627.64591598311 87131.29602220621 89258.55738371897 91586.40677985687 52323.49504281025 82318.51217760569 78675.55907059234 0.9920300761373421 1.108702666097046 1.12081677658774 1.1010744243743562 1.107476032601521 1.1345144341920843 1.164102395480662 0.665053997212305 1.046303491834671 1.0 16.263627904938485 1.764462574699887 24.999999998465803 0.8713774773189354 1.106105364905124 0.43077899330617964 0.10351161619281368 12.033070325773217 11621.677150548274 0.044609480833710954 0.024739866402684406 58.138332947722006 -1.764462574699887 0.23472788758618857 TWS(ph)PTACGGK ddPTM_BT-474_Trastuzumab_2h_R1 1 TWSPTACGGK 10 0 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 T(0.001)WS(0.623)PT(0.377)ACGGK 79.86 0.021418 0.0 135460.0 113560.0 114280.0 112310.0 108600.0 136980.0 121370.0 110160.0 171280.0 132870.0 True False 134730.69841102095 117339.7759515304 130369.63066043305 126528.4344845963 122429.56627736929 127510.89501623622 115498.86942157488 118380.69858114548 129070.33903441373 124390.12284426996 1.0831301982046986 0.9433206855051809 1.048070599814819 1.017190365210937 0.9842386475543947 1.0250885850146905 0.9285212264495754 0.9516888951814287 1.0376253040283845 1.0 16.92451240774036 2.2712190524886395 24.99970109259836 0.9712134387907324 1.0134517175607025 0.13431600491385565 0.04406558669323236 321.3603947107784 245996.9714125256 0.014638720099063442 0.012246779392092464 186.7321305927559 -2.2712190524886395 0.042238278769970106 TWS(ph)RDEVMGDNLLLSSVFQFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TWSRDEVMGDNLLLSSVFQFSK 22 1 Q5SW79;H0Y2V6;Q5SW79-3;Q5SW79-2;H0Y4T4;E7EWM2;E7EMW0;Q96L14;E5RG47 Q5SW79 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 T(0.041)WS(0.959)RDEVMGDNLLLSSVFQFSK 258.4 2.1449e-37 327430000.0 354020.0 304120.0 268750.0 304660.0 262060.0 343380.0 327570.0 316710.0 504930.0 411070.0 True False 352113.9956553196 314242.45035557804 306587.6639831238 343229.92476250656 295431.78764868685 319642.94882957515 311724.1876610807 340344.5084207939 380496.76721535745 384835.1606652666 0.9149735565913941 0.8165637719078096 0.7966726934543196 0.8918881636728908 0.7676839796498125 0.8305970490768221 0.8100200281133392 0.8843903655592138 0.9887266188401045 1.0 18.553881092151926 1.3439425752682457 2.655575187050308 1.001902626287316 0.8306121823405667 0.7085382906232224 0.04095762463806084 0.13612447233519645 1.5962323015151398 0.033722077198318316 0.010263483757736001 22.077127981625665 -1.3439425752682457 -0.17129044394674942 TWTDFEHMETIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 TWTDFEHMETIEK 13 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;Q7Z2W4-4;H7C5K1;Q7Z2W4-5 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 0 ; 191.26 3.7184e-06 604030000.0 760140.0 791560.0 757470.0 718300.0 725520.0 904630.0 865220.0 806360.0 1112880.0 909450.0 False True 756047.4906994931 817906.5960918759 864115.1919527334 809236.706351042 817910.6715060497 842095.057369964 823366.0031386261 866534.6778131132 838625.6358279897 851408.1223806815 0.8879965680682681 0.960651624751794 1.014924769024426 0.9504686237761968 0.9606564114270284 0.989061573684925 0.9670638340122422 1.0177665152995432 0.9849866518574549 1.0 19.699491327843294 4.683297488651233 3.287391104994797 0.9851469154341892 0.8801143024473261 0.6613078154709569 0.020954598627015215 0.1673632661338682 2.9781501184354804 0.0052360978163693336 0.040873726735542654 48227.80415553616 -4.683297488651233 -0.10503261298686306 TWYVQATCATQGTGLYDGLDWLSHELSK ddPTM_BT-474_Trastuzumab_2h_R1 3 TWYVQATCATQGTGLYDGLDWLSHELSK 28 0 P84085 P84085 ARF5 ADP-ribosylation factor 5 0 ;; 414.79 2.3178999999999988e-166 1800163000.0 1166412.0 1086249.0 1043847.0 955939.0 984800.0 1400067.0 1297563.0 1236072.0 1476155.0 1306653.0 False True 1160132.1673925547 1122404.141313612 1190811.584319225 1076960.7793853658 1110208.4426330887 1303283.6636932155 1234794.9205179801 1328313.9692864371 1112376.379713596 1223261.2868580855 0.948392775816787 0.9175506111179873 0.9734727953157034 0.8804012609207238 0.9075807879808163 1.0654172397139006 1.009428593697687 1.0858791850579828 0.9093530480071886 1.0 20.222301163698695 2.7469290150908137 24.959982338162625 1.024393058963734 0.9252010722294065 0.43492421817025195 0.04976015714632133 512.8460779311149 1529639.4145056107 0.014883523503964118 0.015549757363865272 558.3789209166736 -2.7469290150908137 -0.0991919867343275 TYDATTHFETTCDDIK ddPTM_BT-474_Trastuzumab_2h_R1 5 TYDATTHFETTCDDIK 16 0 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 ;;;; 293.78 1.3162999999999999e-45 11568780000.0 9030000.0 7770200.0 6738490.0 6529160.0 6418440.0 8906430.0 8846810.0 7843750.0 11888570.0 8719960.0 False True 8981383.483327309 8028826.409814906 7687210.819994951 7355750.986550145 7235790.288925579 8290749.457581074 8418856.002203867 8429090.454755463 8958791.222176313 8163444.687266651 1.100195300806837 0.9835096233748332 0.941662633175609 0.9010596957952876 0.8863648332439824 1.015594491687191 1.031287198568958 1.0325408914576424 1.0974278096292176 1.0 22.96074661669056 2.496279695818389 20.06050386198366 1.0392279907356792 0.9583282967150599 0.2832882036703067 0.058762531247736824 77.67824535164358 81336.39977135124 0.02025999436080098 0.018728427918145118 313.53042836398214 -2.496279695818389 -0.08089969402061925 TYDRDNSGMIDKNELK ddPTM_BT-474_Trastuzumab_2h_R1 2 TYDRDNSGMIDKNELK 16 2 O75340-2;O75340;A0A024QZ42 O75340-2 PDCD6 Programmed cell death protein 6 0 ; 211.99 3.1867e-12 1322230000.0 989120.0 1098800.0 1025450.0 1214690.0 1051700.0 1336680.0 1676900.0 1266090.0 2510240.0 1558340.0 False True 983794.6878215637 1135372.8937613722 1169824.446628816 1368469.6294550279 1185627.7610857207 1244278.4578062661 1595781.9406199164 1360572.06487475 1891624.9874926794 1458885.407038002 0.674346787674693 0.7782467960019819 0.8018617781666134 0.9380240715639574 0.8126942358638842 0.8528966372571676 1.0938363855868964 0.9326106480406442 1.2966234211179584 1.0 20.476435135794006 2.5867279871732474 0.5995018530460916 1.1109264506977634 0.7405659083938971 0.6032295041453919 0.10714292664284096 0.577261734320619 0.43195860022203075 0.08663099811444298 0.0839484609000778 386.1250585585121 -2.5867279871732474 -0.3703605423038663 TYEDIKENLESR ddPTM_BT-474_Trastuzumab_2h_R1 5 TYEDIKENLESR 12 1 P25325-2;P25325;B1AH49 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase 0 ;;;; 156.08 6.647e-05 1968370000.0 2762090.0 2783460.0 2837460.0 2693090.0 2730720.0 3336980.0 3199960.0 2870600.0 4417520.0 3249970.0 False True 2747219.2143370514 2876105.7834629007 3236949.7043555547 3034034.917871265 3078461.0057544955 3106302.42700598 3045165.7097656974 3084818.748611442 3328881.3877353035 3042554.132160696 0.902931910166571 0.9452932169921359 1.0638922312474377 0.9971999793859441 1.0118015562038003 1.0209522302894944 1.0008583504159863 1.0138911633498962 1.0941075304291363 1.0 21.536851500465332 4.406720102172746 5.180846523474289 1.0222456761173127 0.9122140841265297 0.6591826978058852 0.029695597783368412 0.10105962720575663 4.915974813745278 0.007005758087345512 0.020669816033530766 25510.56645901015 -4.406720102172746 -0.11003159199078294 TYEDLKR ddPTM_BT-474_Trastuzumab_2h_R1 3 TYEDLKR 7 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ;; 104.45 0.013067 2345700000.0 3616500.0 3652100.0 3276900.0 3046120.0 3344700.0 4054200.0 3777400.0 3630900.0 5011300.0 4081400.0 False True 3597029.16583092 3773657.9407589273 3738259.0366746043 3431758.4796742825 3770627.7194099245 3773942.696560262 3594672.7309306823 3901856.19533662 3776332.2629796606 3820921.557737661 0.9414035623282185 0.9876303095301652 0.9783658157295434 0.8981494196667573 0.9868372491903458 0.987704834954734 0.9407868433339577 1.0211819678514624 0.9883302250296911 1.0 21.865489209269136 1.733673260332712 13.224114821366634 1.0032629715287258 0.9615915823240065 0.33477282863060576 0.027748491008040988 0.09396799250419388 109.32884087457238 0.012866148874795197 0.007070864649190357 54.159327161526406 -1.733673260332712 -0.041671389204719245 TYEDMTLEELEDHEDEFNEEDER ddPTM_BT-474_Trastuzumab_2h_R1 2 TYEDMTLEELEDHEDEFNEEDER 23 0 Q9H2J4 Q9H2J4 PDCL3 Phosducin-like protein 3 0 ; 358.02 5.648299999999997e-102 454150000.0 163712.0 156365.0 141129.0 163574.0 151192.0 183627.0 169608.0 171899.0 224699.0 184799.0 False True 162830.59278211294 161569.51450036126 160998.7364847415 184282.45162838008 170445.40501480698 170933.2977014631 161403.41307451983 184726.97626543517 169324.94226234045 173004.96960561632 0.9411902626456513 0.9339010022005528 0.9306018020855451 1.0651858848244187 0.9852052539493856 0.98802536187905 0.9329409059315261 1.0677553175873526 0.9787287766839017 1.0 17.400453954624837 3.780007973118051 24.99284859022489 1.0036751940890212 0.935097982814759 0.40147914574385457 0.03764813410490455 491.65699578049197 296468.74551202764 0.009640833288537645 0.017380087913508216 6025.706484364491 -3.780007973118051 -0.0685772112742622 TYEEGLKHEANNPQLK ddPTM_BT-474_Trastuzumab_2h_R1 3 TYEEGLKHEANNPQLK 16 1 P31948;P31948-2;F5H783;F5GXD8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;; 224.59 4.5999e-15 13093200000.0 9436600.0 7905100.0 7581300.0 7049700.0 7321700.0 10214000.0 10450800.0 9938200.0 14807200.0 10462900.0 False True 9385794.394104818 8168216.474766142 8648681.142159097 7942191.29717798 8254075.095884123 9507930.22116977 9945254.878067032 10679838.949157048 11158163.966314621 9795148.764260644 0.9582084580839212 0.833904279695 0.8829555681395427 0.8108290632763525 0.8426697025777287 0.9706774700412063 1.0153245364025585 1.0903192188488606 1.1391520675037814 1.0 23.223635972978986 2.3491030911095447 1.8552520852064571 1.0809646045869619 0.8621667939664043 0.7667095608082412 0.050978462712450164 0.1486431996714 1.043010734910388 0.023086973584836377 0.01643937994528981 223.41024823197355 -2.3491030911095447 -0.2187978106205576 TYEIWHR ddPTM_BT-474_Trastuzumab_2h_R1 3 TYEIWHR 7 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;; 112.59 0.006319399999999999 1210430000.0 911000.0 988650.0 879310.0 871880.0 806420.0 1092220.0 940980.0 624270.0 1217000.0 915240.0 False True 906095.2772216143 1021556.6175984557 1003109.2049004692 982259.9186041305 909112.8069741817 1016717.4022093258 895461.2025073228 670856.1973788283 917086.6569645097 856828.5996236146 1.057498871559191 1.1922531741438165 1.1707232990835184 1.1463902104056927 1.0610206141269496 1.1866053521742235 1.045087900778147 0.7829526204815295 1.070326851096433 1.0 19.708647110274917 1.987637003068989 10.183592643599347 0.9236555279421441 1.1352995641663561 0.502767456442264 0.08121770717248449 0.20155094684627992 157.0727114043437 0.03087813242754348 0.020993815143852932 97.19345108715646 -1.987637003068989 0.21164403622421202 TYEVSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 TYEVSLR 7 0 Q16531;F5GY55;F5H2L3 Q16531 DDB1 DNA damage-binding protein 1 0 ; 152.63 0.0041887 1058360000.0 1196020.0 1446160.0 1342760.0 1297310.0 1197070.0 1420300.0 1401380.0 1229340.0 1548510.0 1384950.0 False True 1189580.7612103145 1494294.5613778182 1531808.9365208547 1461549.3129838088 1349509.7689102266 1322118.0040265748 1333589.8956085243 1321079.593262034 1166900.4594709224 1296561.3052846517 0.9174890198879949 1.1525059056499882 1.1814396513896857 1.127250448572453 1.0408376089967843 1.0197111379444663 1.0285590740468251 1.0189102419433993 0.8999963632377082 1.0 20.306258992051553 2.406689186576754 1.0089172012371455 0.9742554967305967 1.1001885986727014 0.2965892769178783 0.07381270366855448 0.6749906153115142 1.3622289156749714 0.04956914126267959 0.032680973581118405 255.08750533806196 -2.406689186576754 0.1259331019421046 TYFTDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 TYFTDKK 7 1 P27824;P27824-2;P27824-3;D6RGY2;D6RFL1;H0Y9H1 P27824 CANX Calnexin 0 ; 119.41 0.0076786 3327400000.0 2362600.0 2492140.0 2982100.0 1863690.0 2303450.0 3766500.0 2965800.0 2311350.0 4507200.0 3144700.0 False True 2349880.024109535 2575089.373369556 3401953.759122136 2099632.962911557 2596780.7038821983 3506130.7203873093 2822332.923543766 2483834.673797485 3396460.953385733 2944002.553686879 0.7981922506034163 0.8746899251648678 1.1555539430024435 0.7131899258314541 0.8820578978880835 1.1909401083896674 0.9586720364794719 0.8436931111648971 1.153688181802772 1.0 21.489347492142265 TYGADLASVDFQHASEDAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TYGADLASVDFQHASEDAR 19 0 P30740 P30740 SERPINB1 Leukocyte elastase inhibitor 0 ;; 245.78 1.3215e-24 885700000.0 486312.0 762547.0 845286.0 897280.0 884961.0 851390.0 837482.0 782409.0 780042.0 828917.0 False True 483693.75022634317 787927.9159256052 964294.921442377 1010875.5559998099 997655.5377752032 792535.4132564847 796969.7961680767 840796.3325723995 587811.1011272888 776014.8073884521 0.6233047947295407 1.0153516510557894 1.242624383273755 1.302649828811569 1.2856140479234486 1.0212890343209169 1.0270033362509474 1.0834797539520653 0.7574740784978944 1.0 19.565724655640548 1.2660241568696615 22.038000456327254 0.8787377008058451 1.088662939310779 0.14074364207015833 0.19183181431572202 93.94448508236012 75386.41587525423 0.13280884340103724 0.04844923236356128 18.45118047783896 -1.2660241568696615 0.20992523850493383 TYGHTYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYGHTYEK 8 0 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 84.476 0.017425 86405000.0 107570.0 103130.0 96927.0 93099.0 73624.0 102230.0 115830.0 101190.0 136400.0 114810.0 False True 106990.85507215044 106562.61970659856 110573.47909541316 104885.32385434449 82999.57999636325 95163.080723535 110226.86038643021 108741.31163240841 102786.04766635923 107482.72750621365 0.9954237071809071 0.9914394822222772 1.0287557978933948 0.9758342227431938 0.7722131911061243 0.8853802181195444 1.025530919654583 1.0117096407524828 0.9563029339799467 1.0 16.713745311523535 -2.0227184141865493 12.731288730483994 1.073046463824082 0.9624712148445822 0.024381829832131663 0.07421413424305047 0.08954367979476338 0.00015978677169786642 0.041816505487694625 0.018461601466295836 0.009490335937993588 2.0227184141865493 -0.11057524897949977 TYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 TYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPR 38 1 P19623;K7ESL0 P19623 SRM Spermidine synthase 0 ; 168.31 3.0933999999999997e-18 92900000.0 22665.6 36463.3 32101.6 39791.0 35334.0 33097.0 35734.9 34991.0 43196.0 44065.0 False True 22543.57092798488 37676.95889796969 36621.226247890816 44828.53652013686 39833.57545897393 30809.082291957697 34006.26636642531 37602.20610069775 32550.924596745255 41252.7339740555 0.5464745910455993 0.9133202885817295 0.8877284659708248 1.0866803773134222 0.9655984372823846 0.7468373444371957 0.8243397004380943 0.9115082196575475 0.7890610260453779 1.0 15.332202114910507 4.7399590978175 24.625192581080867 0.8993337204615119 0.5464744512388526 0.5560493795111342 0.09546796583925175 77.03225018775187 1356252.3290108568 0.023560694273254596 0.14780666537330733 54948.91201199801 -4.7399590978175 -0.3528592692226593 TYGSEFVYSDHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYGSEFVYSDHAK 13 0 O75165 O75165 DNAJC13 DnaJ homolog subfamily C member 13 0 132.47 0.00011842 312990000.0 129070.0 149780.0 151610.0 164020.0 166610.0 185130.0 186020.0 177640.0 237580.0 199170.0 False True 128375.10146102523 154765.33675607815 172955.37018225636 184784.91518265073 187826.79592516145 172332.39884914443 177021.50193459142 190896.3988376425 179031.59240889765 186458.80008198414 0.688490440808264 0.8300243093274724 0.9275795516554303 0.9910227626768089 1.0073367191174447 0.9242384847128241 0.9493866841187263 1.0237993527455245 0.9601670306264932 1.0 17.50849736237721 4.5534812511007905 1.451656139999017 0.9807018083847086 0.6283177590775776 0.9135752240443148 0.028358051115228874 0.22409135675507005 0.5640499941278285 0.008233986683992937 0.10362429484132131 35766.89593394794 -4.5534812511007905 -0.35238404930713096 TYHSVGDSVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TYHSVGDSVLR 11 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 81.625 0.021162 297350000.0 240040.0 321490.0 319970.0 232680.0 210760.0 263450.0 297010.0 261590.0 376140.0 272820.0 False True 238747.65131095107 332190.6003051909 365018.9947709034 262137.26414278202 237599.036727609 245238.3215945936 282642.4916116173 281111.1741271051 283445.3370177738 255408.3940270465 0.9347682256898293 1.3006252263972715 1.429158176893159 1.0263455323830233 0.9302710571933999 0.9601811347227064 1.1066296105432105 1.1006340461047526 1.1097729896369746 1.0 17.96244641459958 3.656995534044261 24.99993835376418 1.0385951634263122 1.2294365578078834 0.3096246229782388 0.12839487165568625 112.58638646737379 34506.861753429424 0.03502134516825413 0.054254837233716 4539.369486822022 -3.656995534044261 0.19084139438157122 TYIPPKGETK ddPTM_BT-474_Trastuzumab_2h_R1 2 TYIPPKGETK 10 1 P09429;Q5T7C4;B2RPK0 P09429 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 0 ; 99.215 0.0044204 2943400000.0 1762730.0 1633140.0 1482070.0 1450910.0 1326850.0 1984180.0 1985460.0 1901060.0 3098000.0 2085520.0 False True 1753239.657537715 1687498.077646024 1690732.573616628 1634595.0572348468 1495816.4826439018 1847018.3068573198 1889415.7146062478 2042926.7505870801 2334539.411073175 1952420.3280964983 0.8979826896429759 0.8643108522083671 0.8659675118548877 0.8372147296932144 0.7661344543068962 0.9460146876559415 0.9677299951329249 1.0463560131945668 1.1957155831035735 1.0 20.896832247214984 2.0381144400264932 1.5427029634577616 1.0942491156307181 0.8506915088070222 0.739463791940855 0.05927567071397358 0.19091577457911266 0.8521797467027833 0.03767720132538214 0.018771342490634953 109.17279774949267 -2.0381144400264932 -0.24355760682369598 TYLGEEGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 TYLGEEGKR 9 1 Q9BV86;S4R338;Q9BV86-2 Q9BV86 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed 0 ; 114.97 0.0024886999999999995 1052770000.0 496330.0 519570.0 454460.0 386840.0 391040.0 504960.0 514150.0 443730.0 665900.0 514940.0 False True 493657.81442744675 536863.5733633026 518444.01776286715 435813.90433640097 440836.6261243326 470053.30374798237 489278.60025626386 476843.38581528474 501797.86760284967 482076.0883376855 1.0240246848369887 1.113649040786357 1.0754402267712282 0.9040355140600155 0.9144544539523698 0.9750604004625897 1.0149406122660312 0.9891454841901735 1.040910096439692 1.0 18.878901346211666 3.773781438268953 23.426359722524868 0.976939588095468 1.0752991880055456 0.4868953707783503 0.04420385180478826 245.3442638880908 163183.91005360542 0.012052597434843375 0.02172630778474894 5939.931521811763 -3.773781438268953 0.09835959991007759 TYPVQEYFLEDCIQMTHFVPPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 TYPVQEYFLEDCIQMTHFVPPPK 23 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 135.1 1.6572e-05 290350000.0 275474.0 270181.0 233545.0 226573.0 225437.0 291460.0 271813.0 295180.0 371010.0 300720.0 False True 273990.8785920388 279173.8112571364 266426.10599046934 255257.11856894713 254145.06568021458 271312.05622304097 258664.3667635044 317207.8304936687 279579.5567792959 281527.79214065516 0.9732285274881466 0.9916385488423016 0.9463580983058297 0.9066853280382959 0.9027352637115138 0.9637132240481954 0.9187880343773382 1.1267371795932222 0.9930797760798483 1.0 18.102917825176903 1.756662582434269 24.999999999998472 1.0508947813152962 0.9430987786910415 0.5041696263668488 0.043509290462701446 5.202435199959544 7192.275742899481 0.019858538588399022 0.011012687924701451 57.103480869082965 -1.756662582434269 -0.1077960026242547 TYQEHK ddPTM_BT-474_Trastuzumab_2h_R1 4 TYQEHK 6 0 P09960-4;P09960 P09960-4 LTA4H Leukotriene A-4 hydrolase 0 ;;; 102.8 0.035230000000000004 1180130000.0 2059980.0 1798770.0 1709450.0 1503840.0 1512200.0 1210390.0 1986550.0 1841210.0 2798690.0 2182490.0 False True 2048889.2965652947 1858640.9720705724 1950125.7011942395 1694225.989807812 1704769.70648838 1126718.5882515837 1890452.9871420437 1978610.4396749393 2108990.3500246545 2043201.619676305 1.0027837080952837 0.9096708587990588 0.9544460431189307 0.8292015694839848 0.8343619592267447 0.5514475798184246 0.9252405484298409 0.9683872705564913 1.0321988440664862 1.0 20.962400143123713 -0.341372436821596 7.097085844184292 0.999998386546831 0.8864220867187984 0.061169365994116376 0.12898689197889476 17739633.399956748 2499565.8904472548 0.13099683762655165 0.03177139993838071 0.4556460011673252 0.341372436821596 -0.11357629982803263 TYS(ph)DTDSCSDIPLEDPDRPVHCSK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYSDTDSCSDIPLEDPDRPVHCSK 24 1 Q9HB20 Q9HB20 PLEKHA3 Pleckstrin homology domain-containing family A member 3 1 T(0.115)YS(0.722)DT(0.163)DSCSDIPLEDPDRPVHCSK 144.12 1.4111e-07 355820000.0 322660.0 491390.0 446270.0 489970.0 497440.0 659560.0 532080.0 560870.0 701780.0 620290.0 True False 320922.83441089606 507745.61909847276 509100.93695162307 552000.1517622446 560786.035442123 613966.1696372369 506341.2576570129 602724.9674401511 528835.7223702167 580702.5611430127 0.5526458050731081 0.8743643528953329 0.8766982806990653 0.9505729588581935 0.9657027073176886 1.0572816631439519 0.8719459694828409 1.037923728550105 0.9106826071669031 1.0 19.147439871384552 5.129903811785816 1.122313103144222 0.97215938574286 1.848881825785229e-12 0.8269125954753861 0.05619349415146955 1.268340806972138 0.7332932213920033 0.015014658096778011 1.7925858518773974 134866.4145287707 -5.129903811785816 -0.9721593857410111 TYS(ph)FEQPWPNAR ddPTM_BT-474_Trastuzumab_2h_R1 6 TYSFEQPWPNAR 12 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-5;Q8TEW0-3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 T(0.001)YS(0.999)FEQPWPNAR;T(0.001)YS(0.999)FEQPWPNAR;TYS(1)FEQPWPNAR;TYS(1)FEQPWPNAR;T(0.003)YS(0.997)FEQPWPNAR;T(0.016)YS(0.984)FEQPWPNAR 266.6 1.0133e-21 3519760000.0 1580790.0 1597930.0 1445800.0 1633290.0 1499410.0 1874580.0 1656970.0 1554460.0 2074520.0 1672660.0 True False 1572279.2022822783 1651116.1340809152 1649356.0728811196 1840064.346535005 1690350.975800649 1744994.696886668 1576816.0308599079 1670461.69858794 1563282.3431438112 1565909.4067637275 1.0040677931245814 1.0544135739584608 1.0532895873522157 1.1750771395759572 1.0794692007720328 1.1143650388390327 1.0069650415592821 1.066767778118334 0.9983223399715404 1.0 20.57856931950529 1.5318808926981335 1.1892220945284295 0.9995781635532749 1.0789557636437996 0.2606916126060361 0.04695435847108899 0.6184930035173641 1.6789452067585822 0.042784739938765165 0.015086786369027569 34.031484395666425 -1.5318808926981335 0.07937760009052475 TYS(ph)GPMNK ddPTM_BT-474_Trastuzumab_2h_R1 5 TYSGPMNK 8 0 Q8WVV4-1;Q8WVV4;Q8WVV4-3 Q8WVV4-1 POF1B Protein POF1B 1 TYS(1)GPMNK;TYS(1)GPMNK;TYS(1)GPMNK;TYS(1)GPMNK;TYS(1)GPMNK 98.254 0.0080274 2662069000.0 4390190.0 3944760.0 3512400.0 3304780.0 3551710.0 5011800.0 4567390.0 4014920.0 6042520.0 4549410.0 True False 4366553.704835966 4076058.9519422227 4006915.389671905 3723164.8091532686 4003999.2158655166 4665346.062508192 4346447.896575826 4314533.717750661 4553421.911619714 4259062.75885414 1.0252381690686205 0.9570319064842443 0.9407974515853172 0.8741746764386611 0.9401127531031627 1.0953926548298525 1.020517457165904 1.0130242173072475 1.0691135983271516 1.0 22.022104558010394 2.7630728783107985 24.347053010933948 1.03652669446005 0.9435593673913124 0.5347614350380161 0.04284466130138114 451.80511016608654 448759.01774563047 0.013506330260903521 0.014318620972176704 579.5259376529905 -2.7630728783107985 -0.09296732706873756 TYS(ph)LPEDDDFIK ddPTM_BT-474_Trastuzumab_2h_R1 3 TYSLPEDDDFIK 12 0 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 1 T(0.116)YS(0.884)LPEDDDFIK;TYS(1)LPEDDDFIK;TYS(1)LPEDDDFIK 267.37 8.0386999999999985e-22 165948000.0 435750.0 370690.0 296364.0 343955.0 248483.0 314866.0 393872.0 366816.0 469460.0 414003.0 True False 433403.9704163763 383028.1925631629 338089.4751579336 387499.6677334997 280125.8371758709 293100.0545348386 374818.9066228444 394189.6725739064 353767.87344170833 387580.97409419925 1.1182281881335074 0.9882533410168637 0.8723066862300701 0.9997902209702384 0.722754355604122 0.7562292117662163 0.967072513037616 1.017051142655163 0.9127586158440459 1.0 18.564138226681948 4.618776035909704 2.517520182904724 0.9070730426437762 1.1379613167366838 0.31773040348136217 0.09562404829401955 0.5173267221527242 4.897390117966266 0.026122094383379736 0.2257363813515819 41569.618219428354 -4.618776035909704 0.23088827409290757 TYS(ph)LTTPAR ddPTM_BT-474_Trastuzumab_2h_R1 3 TYSLTTPAR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 T(0.002)YS(0.888)LT(0.11)TPAR;T(0.007)YS(0.991)LT(0.002)TPAR;T(0.003)YS(0.981)LT(0.015)TPAR 117.02 0.0012787 515800000.0 585620.0 505030.0 451440.0 510740.0 472250.0 493510.0 475270.0 497950.0 667380.0 571030.0 True False 582467.0869884979 521839.61825291853 514998.82801317767 575399.6316326478 532388.2382549514 459394.8152975813 452279.3743922874 535109.5575388655 502913.141433833 534586.3765166203 1.0895659009940912 0.9761558490383537 0.9633594319573282 1.076345482991856 0.9958881513666847 0.8593462824305601 0.8460361024150155 1.0009786650861816 0.9407518850570585 1.0 19.02806354661872 2.9813136774233637 23.43953601384393 0.9284036839313143 1.0205018085375583 0.37609383071891755 0.05934573429673938 383.649365538933 481238.78731472127 0.01850330633584424 0.019971204439065547 957.8856725913321 -2.9813136774233637 0.092098124606244 TYS(ph)QDCSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYSQDCSFK 9 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5 Q86U86-8 PBRM1 Protein polybromo-1 1 TYS(1)QDCSFK 197.43 2.9386e-05 320680000.0 498500.0 360640.0 301360.0 377180.0 300320.0 448590.0 386760.0 402210.0 646460.0 490460.0 True False 495816.1313885566 372643.6843885167 343788.868531923 424930.94932686345 338563.9718639005 417580.0291672756 368050.94123332266 432224.9525809964 487148.5951201956 459158.4228960683 1.0798367331721275 0.81157976377331 0.7487369312829539 0.9254560694905245 0.73735764167945 0.9094465185533488 0.8015772397507166 0.9413416612392878 1.0609597272496576 1.0 18.808632485358668 1.4900069723217244 3.9461340081469145 1.026853749865182 0.8532208344753607 0.3404852383632222 0.0952303148252701 0.20499384768933257 6.610695641032803 0.06061096316821089 0.023473475864277917 30.903450456397888 -1.4900069723217244 -0.17363291538982129 TYSDDHVK ddPTM_BT-474_Trastuzumab_2h_R1 2 TYSDDHVK 8 0 O43592;F8WDU6;F5GYW6 O43592 XPOT Exportin-T 0 ; 91.516 0.012432 705190000.0 632830.0 704560.0 667070.0 574050.0 642510.0 661190.0 681250.0 713310.0 915580.0 690150.0 False True 629422.9135940227 728010.8536844854 760987.6577236194 646724.6711413279 724329.8400448667 615483.4915738443 648295.3348722742 766540.8143147867 689947.5771434397 646104.0361328588 0.9741819867916659 1.1267703233087125 1.1778097878452767 1.0009605806089432 1.1210730773022477 0.9526074086422857 1.003391557112893 1.1864046213095663 1.0678583301738813 1.0 19.30140696184565 -1.609352917206446 8.41720455486866 0.9999616078954785 1.0745414746093658 0.055753242694948524 0.07970684862255276 5.729730112165337e-05 2.659215661852329e-06 0.077003401388844 0.018140542450540545 0.02458369067691056 1.609352917206446 0.07457986671388728 TYSHLNIAGLVGSIDNDFCGTDMTIGTDSALHR ddPTM_BT-474_Trastuzumab_2h_R1 2 TYSHLNIAGLVGSIDNDFCGTDMTIGTDSALHR 33 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ; 206.41 1.8843e-27 816860000.0 223783.0 264940.0 225830.0 240550.0 278980.0 296170.0 306590.0 202118.0 305010.0 277370.0 False True 222578.1771926288 273758.36774038826 257624.90105045156 271003.6053358529 314506.44935599033 275696.4650091887 291759.07041246304 217201.07149440827 229844.3724246057 259668.00913159587 0.8571644151969043 1.054262974695707 0.9921318452435591 1.0436541884468806 1.2111867395902556 1.0617267253336156 1.1235849629231913 0.836456798127697 0.8851470506254161 1.0 17.986308760651468 1.7335650178144013 12.028607853169563 0.897081810453812 1.053604421994554 0.3253221725102813 0.09311375021974663 0.08875457690580629 71.39467468105791 0.04412450594218896 0.024153428681324644 54.14583030234704 -1.7335650178144013 0.15652261154074198 TYSYLTPDLWK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYSYLTPDLWK 11 0 P15880;H0YEN5;E9PQD7 P15880 RPS2 40S ribosomal protein S2 0 141.95 8.813299999999999e-05 162210000.0 303070.0 317390.0 350860.0 300730.0 224450.0 295930.0 342710.0 271990.0 504950.0 354410.0 False True 301438.30479424255 327954.1342836932 400258.03827021003 338802.38716545806 253032.37708062233 275473.0556442895 326131.80802066374 292287.2749372347 380511.83848334424 331791.25037433306 0.9085179445032208 0.9884351498530756 1.2063550133363417 1.0211311684175364 0.7626252253341416 0.830260157052049 0.9829427619104355 0.8809372598206576 1.1468410877443083 1.0 18.3399163161013 3.451295675338939 24.981274303809574 0.9208996988653927 1.0438205742974869 0.13012366490860472 0.11992115464396567 367.36033010400877 355349.2145103196 0.03359039285655709 0.045482914427876574 2826.8038578314577 -3.451295675338939 0.12292087543209418 TYT(ph)HEVVTLWYR ddPTM_BT-474_Trastuzumab_2h_R1 2 TYTHEVVTLWYR 12 0 G3V5T9;P24941;Q00526;K7EJ83 G3V5T9 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 T(0.038)YT(0.962)HEVVTLWYR;T(0.152)YT(0.848)HEVVTLWYR 187.63 3.7653e-05 1078580000.0 602860.0 473600.0 477140.0 413590.0 311570.0 531370.0 547380.0 428970.0 770940.0 601290.0 True False 599614.2687440425 489363.48970275495 544317.164624773 465950.4515936616 351246.5926799262 494637.6426104353 520901.1382053366 460981.91966552334 580952.167066738 562915.1574097318 1.0651947471146141 0.8693379157785932 0.9669612861900221 0.8277454345655646 0.6239778553773471 0.8787072724893799 0.9253634963433499 0.8189190033303477 1.032042145995862 1.0 19.102557970085144 1.2312628943427162 24.99628207011111 1.0160211722544445 0.8659929529469915 0.22037192051576004 0.107859708748267 272.8502934892643 934531.7592138784 0.0977942477801597 0.026432674502004882 17.031891991557863 -1.2312628943427162 -0.15002821930745303 TYTETVNHHYLLFQDTDLGSFHDLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 TYTETVNHHYLLFQDTDLGSFHDLLR 26 0 Q8WUA4;H0Y4Q6;H7C318 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 0 86.73200000000001 0.004401 10883000.0 5625.5 6337.4 4882.8 7614.0 6647.7 6403.1 5662.0 3915.4 7295.7 5713.9 False True 5595.212933051807 6548.336527960803 5570.255797941577 8577.931619318992 7494.2451909951005 5960.468768276108 5388.107429059551 4207.587029998344 5497.772492371388 5349.2340100840975 1.0459839525629282 1.2241634065019815 1.0413183995018391 1.6035812983968025 1.4009940819316073 1.1142658476035527 1.0072671000936155 0.7865774841905253 1.0277681780246055 1.0 12.385116602536321 2.327272917348004 2.7991314765383066 0.9161235646605046 1.2661825969530318 0.4256603332327017 0.1663613824807821 0.24278029899124287 3.8806194300706385 0.06904953725894881 0.053367583613119 212.4579160883238 -2.327272917348004 0.3500590322925272 TYYYNNR ddPTM_BT-474_Trastuzumab_2h_R1 2 TYYYNNR 7 0 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 ; 150.02 0.004599499999999999 445880000.0 237420.0 281780.0 276740.0 247060.0 206991.0 232130.0 273770.0 235520.0 359170.0 226150.0 False True 236141.75709984152 291158.87696039316 315702.5865327988 278337.7706683676 233350.07691822233 216083.3994752435 260526.69919703895 253095.69834632703 270657.36613142444 211716.91338324425 1.1153655762607122 1.375227289627755 1.4911543035833066 1.314669509490383 1.1021796661838648 1.020624172260131 1.2305426856731116 1.1954439269959507 1.2783927453235056 1.0 17.69177700065266 3.310975736468898 6.2824524327558 1.1519207552356776 1.3422986412591655 0.36370003052443356 0.1191472460281768 0.23418668143516266 15.697607131344268 0.033877996892853514 0.045814932609123026 2046.3303074201774 -3.310975736468898 0.19037788602348793 TYYYNTETK ddPTM_BT-474_Trastuzumab_2h_R1 1 TYYYNTETK 9 0 O75400-3;O75400;O75400-2;F5H578;H0YG38 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 138.11 0.00033892 66063000.0 67797.0 72257.0 51699.0 64205.0 48584.0 68372.0 57019.0 62417.0 91381.0 75829.0 False True 67431.98848495477 74662.03056472114 58977.76982423638 72333.34641691315 54770.884420071045 63645.60457037599 54260.77313626748 67074.87348710395 68861.3769926655 70989.52829952697 0.9498864142389871 1.0517330140538297 0.8307953473840644 1.0189298076712976 0.7715347000049866 0.8965491966904657 0.7643489742222874 0.9448558835902406 0.9700216164575409 1.0 16.11531860720138 4.242171080743798 24.99947690816518 0.8928927817237208 1.0008097121607165 0.17347319128721694 0.08735757315106497 136.56419632777659 945554.6421197795 0.02031138382376893 0.05131241757288714 17465.100165732987 -4.242171080743798 0.10791693043699568 VAAAPDEDLDGDDEDDAEDENNIDNR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAAPDEDLDGDDEDDAEDENNIDNR 26 0 Q9BXV9 Q9BXV9 C14orf142 Uncharacterized protein C14orf142 0 268.36 1.7474000000000004e-53 190510000.0 117280.0 110790.0 82360.0 74881.0 75305.0 96874.0 78607.0 64962.0 108380.0 80771.0 False True 116648.57751103284 114477.57817603082 93955.57211404682 84360.9269222781 84894.64538229558 90177.32839686716 74804.47910209883 69809.79431035207 81671.20121759543 75616.12562846784 1.5426415535248896 1.5139307551739 1.2425335380932898 1.1156473069881543 1.1227055694365617 1.1925674272171034 0.98926622437181 0.9232130544925748 1.080076511971515 1.0 16.206406310866264 4.675325833384762 0.5253741038883039 0.9900299030301688 1.9867976765407844 0.8736370520699441 0.07097196101023244 1.3226355780470929 0.29350966592123434 0.04409245285272666 0.8090789108715482 47350.63781956753 -4.675325833384762 0.9967677735106156 VAAASGHCGAFSGSDSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VAAASGHCGAFSGSDSSR 18 0 Q9NZB2;Q9NZB2-6;A0A494C0Y9 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 0 ;;; 237.46 7.5099e-24 1084830000.0 286612.0 441790.0 457649.0 480806.0 463431.0 494485.0 482381.0 435928.0 483227.0 463195.0 False True 285068.912837587 456494.71308230545 522082.001243582 541675.9903018507 522446.1908792588 460302.41584248404 459046.38815563015 468459.16095753113 364142.18076005694 433633.49853880965 0.6573959664051962 1.0527201302955835 1.2039706411123963 1.2491562393751998 1.2048104969743256 1.0615010542163812 1.058604535171874 1.0803112825371461 0.8397464263879205 1.0 18.726116684793435 -3.176575381968162 9.899414083640654 1.0029561558742246 1.0601445761160608 0.0 0.1709399782802242 0.0 0.0 0.0 0.037933682882630215 0.0006659239245892743 3.176575381968162 0.057188420241836235 VAAAVDLIIK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAAVDLIIK 10 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 161.92 1.6116e-05 52360000.0 111030.0 112300.0 115750.0 107730.0 113540.0 132240.0 130970.0 123660.0 143740.0 133570.0 False True 110432.22681659274 116037.83761321651 132046.59388296423 121368.60695419426 127998.64599569546 123098.56005947643 124634.48074601356 132888.13713275647 108317.2030173202 125045.44824496956 0.8831367184213784 0.9279653057494205 1.0559888083593343 0.9705959605696945 1.0236169951979417 0.9844305553475318 0.9967134549499883 1.0627187074608484 0.8662226777349145 1.0 16.932093017650004 4.4276640776459555 6.296934203820654 1.0002673374784086 0.8935038033807255 0.33446220454795883 0.051763490615465035 0.16273400546604114 14.565332357314539 0.011873261837252794 0.03399102078604438 26770.96816682862 -4.4276640776459555 -0.10676353409768302 VAAELWR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAELWR 7 0 E9PPP7;A6NGR9 E9PPP7 MROH6 Maestro heat-like repeat-containing protein family member 6 0 77.49600000000002 0.08815 132900000.0 366860.0 470340.0 389010.0 435730.0 480250.0 502270.0 469040.0 397930.0 483830.0 544450.0 False True 364884.8665219778 485994.98257346626 443779.22666446515 490893.37332359614 541406.9908352366 467549.25711640314 446350.7432931985 427625.5572475969 364596.5794898432 509702.7348729043 0.7158777882817576 0.9534871000734386 0.8706628320821599 0.96309738939502 1.0622014633102526 0.9172979172516854 0.8757079622193851 0.8389704978809392 0.7153121899193975 1.0 18.95929656865909 -1.0355954505480858 7.050904585043563 1.0000000179847008 0.8865438975385025 0.10916888226475308 0.1015988642922114 2.9343016034757417e-08 3.994383751215697e-09 0.09947657827206217 0.023446850511899736 0.09213073787735983 1.0355954505480858 -0.11345612044619835 VAAETQS(ph)PSLFGSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAETQSPSLFGSTK 15 0 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 1 VAAETQS(0.79)PS(0.21)LFGSTK 226.67 8.744e-13 118530000.0 169210.0 162530.0 139450.0 141710.0 148250.0 165700.0 159580.0 138250.0 199150.0 163060.0 True False 168298.99216099834 167939.71279854042 159083.3478788711 159650.47147014624 167128.75875340728 154245.54901584415 151860.50574520024 148566.91701927548 150072.1509732804 152653.37119731057 1.1024911591599584 1.1001375959229334 1.042121419469011 1.0458365263600478 1.0948252072165947 1.0104300206804842 0.9948061058469156 0.9732305015868062 0.9830909713700732 1.0 17.219899924813063 2.56807820042893 3.3656804323730043 0.9853751565189354 1.0746545099577118 0.8087054215542365 0.02074569894957479 0.11237378735752417 2.4201780719549486 0.007744160466393191 0.007071902200720018 369.8947782000686 -2.56807820042893 0.08927935343877647 VAAGVLCELAQDKEAADAIDAEGASAPLMELLHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAGVLCELAQDKEAADAIDAEGASAPLMELLHSR 35 1 P14923 P14923 JUP Junction plakoglobin 0 241.22 1.1794e-47 93499000.0 37403.0 50525.0 45840.0 44049.0 47837.0 61562.0 59700.0 46334.0 67919.0 62281.0 False True 37201.626403863964 52206.69408199256 52293.87355157733 49625.59888355426 53928.75839788694 57306.36384136026 56812.08292385289 49791.67835928469 51181.272517972604 58306.17325855329 0.638039238810903 0.8953887927181714 0.8968839940787234 0.851120835241479 0.9249236467422564 0.9828524260585673 0.9743750918436201 0.8539692381883499 0.8778019488779348 1.0 15.831361018687211 4.7453077897480265 4.012874162847901 0.9140013611265967 0.6115992371912568 0.7376577929153407 0.0500739533841509 0.12997369977862003 4.3744653332566985 0.012552788843516247 0.11536177509537145 55629.83729767436 -4.7453077897480265 -0.30240212393533994 VAAHPILR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAHPILR 8 0 G3V5X9;Q9UNH7;A0A0A0MRI2;Q9UNH7-2 G3V5X9;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed 0 68.915 0.055272 317300000.0 203730.0 277980.0 263560.0 287940.0 231730.0 227700.0 264940.0 194430.0 286230.0 250640.0 False True 202633.14031653077 287232.3962575414 300666.9570954124 324393.1744768469 261239.44192868174 211959.63494814554 252123.8400309147 208939.35389553523 215692.45178549885 234643.94061630004 0.8635771278998646 1.2241202372544375 1.2813753310897387 1.3824911635255421 1.1133440788734104 0.9033245622768974 1.0744954221647622 0.890452799875203 0.9192329928442879 1.0 17.840113679504938 2.9236554757366835 5.0082796622495005 0.9575215284448142 1.2028753966574108 0.3993545963062939 0.1337913305403653 0.21476830598938307 9.732353079880937 0.041883758398192944 0.04514761742053856 838.794309980862 -2.9236554757366835 0.24535386821259664 VAAIEALNDGELQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAAIEALNDGELQK 14 0 P50502;Q3KNR6;F6VDH7;Q8IZP2;H7C3I1 P50502 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 0 109.24 0.0038508 0.0 34617.0 29103.0 30693.0 33053.0 31951.0 42271.0 38203.0 31930.0 39154.0 41772.0 False True 34430.62591831025 30071.67576186498 35014.30761166151 37237.50641099958 36019.77046158592 39348.90526523079 36354.97494036771 34312.77873725469 29505.02133672016 39106.07519719156 0.8804418685509744 0.768977086302555 0.8953674700184716 0.9522179411569747 0.9210786375251667 1.0062095228635133 0.9296503102663337 0.877428342379879 0.754486897187757 1.0 15.255105129691362 4.067432091752265 7.641458576448909 0.9173589011684266 0.8254382389766407 0.2186625328934484 0.0710261740409373 0.3540714705412005 34.29841183188315 0.017870402038997403 0.03890511218118738 11679.710863451772 -4.067432091752265 -0.09192066219178585 VAALAAS(ph)PASVAVDSGSELNSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VAALAASPASVAVDSGSELNSR 22 0 O15119;O15119-2 O15119 TBX3 T-box transcription factor TBX3 1 VAALAAS(1)PASVAVDSGSELNSR;VAALAAS(0.991)PAS(0.009)VAVDSGSELNSR;VAALAAS(0.999)PAS(0.001)VAVDSGSELNSR 274.91 7.2963e-43 144150000.0 247637.0 249780.0 239312.0 248458.0 238136.0 247056.0 258473.0 258411.0 291234.0 260609.0 True False 246303.7499070572 258093.77630480126 273005.0494628071 279912.75732502755 268461.20805734495 229977.60022726856 245969.67352725336 277694.94100447017 219463.2830356632 243976.7105014096 1.0095379571306835 1.057862349952907 1.1189799587909017 1.1472929393537763 1.1003558803035582 0.9426211204939573 1.0081686609420544 1.138202660548068 0.8995255431743154 1.0 17.89638391219323 2.7902904141381724 24.944791476531236 1.017961735187934 1.0903457277807094 0.2768189892834565 0.06806462350079384 565.5423160747135 272710.98390180536 0.021951405631507617 0.023282971234129524 617.0074588429212 -2.7902904141381724 0.07238399259277539 VAALAASPAS(ph)VAVDSGSELNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAALAASPASVAVDSGSELNSR 22 0 O15119;O15119-2 O15119 TBX3 T-box transcription factor TBX3 1 VAALAAS(0.053)PAS(0.947)VAVDSGSELNSR 122.97 2.6193e-05 82131000.0 55723.0 63757.0 58900.0 57469.0 49771.0 64459.0 67982.0 57228.0 69881.0 61968.0 True False 55422.99355940734 65879.11320307951 67192.60803202234 64744.569507570704 56109.0418341708 60003.10105016472 64693.45094354057 61498.64395789577 52659.76390742559 58013.14918652605 0.9553522664527184 1.1355893297787114 1.1582306593283216 1.116032665273894 0.96717800396884 1.0343017383393633 1.115151510488351 1.0600811164407407 0.9077211743515586 1.0 15.82409231627487 1.3130172252678356 7.287345240555148 0.9546917275867445 1.0724153109107148 0.3113035588885804 0.06757251552501282 0.24016646341244674 19.228884671664343 0.04682684469825011 0.016899183259709866 20.55972139659996 -1.3130172252678356 0.11772358332397037 VAALFPALRPGGFQAHYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAALFPALRPGGFQAHYR 18 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 0 113.59 0.00014583 347860000.0 170420.0 264520.0 233020.0 267960.0 237980.0 216050.0 236400.0 213680.0 319530.0 244580.0 False True 169502.4776554419 273324.3882942833 265827.1905538512 301883.70852544194 268285.342382029 201114.97202699527 224964.4288643022 229625.88664505412 240786.1129826377 228970.69500452708 0.7402802251706954 1.1937090390055343 1.160965994135605 1.3184381893039774 1.1717016554311661 0.8783437200250405 0.982503148972205 1.0028614650469314 1.0516023152127698 1.0 17.80480344010825 2.7561710780539705 24.798653779117746 0.9848244572982696 1.1349110352535765 0.1699154207355965 0.1453491558619086 1232.1410995367119 1735070.9175263583 0.04471874912245954 0.04733083959983157 570.3889166472076 -2.7561710780539705 0.1500865779553069 VAAQSPPS(ph)PASAEALLPALPLR ddPTM_BT-474_Trastuzumab_2h_R1 6 VAAQSPPSPASAEALLPALPLR 22 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 VAAQS(0.001)PPS(0.999)PASAEALLPALPLR;VAAQSPPS(0.998)PAS(0.002)AEALLPALPLR;VAAQS(0.021)PPS(0.978)PASAEALLPALPLR;VAAQS(0.003)PPS(0.996)PAS(0.001)AEALLPALPLR;VAAQSPPS(0.997)PAS(0.003)AEALLPALPLR;VAAQSPPS(1)PASAEALLPALPLR 257.38 4.0307e-37 823133000.0 520297.0 608186.0 606712.0 608458.0 571829.0 570765.0 530250.0 519177.0 578660.0 513063.0 True False 517495.778762431 628429.1033537997 692131.7759647599 685488.7204133951 644648.0336539762 531309.3589862895 504599.781748291 557920.6240673871 436056.9966467407 480318.8800846668 1.077400452531058 1.308358112516887 1.440983906030836 1.4271533950374022 1.3421251180889304 1.106159638972831 1.0505516286583283 1.1615629682702484 0.907848961860246 1.0 18.873632992712704 2.673937095033389 4.081021232996519 1.059170689346492 1.3320740816320964 0.6021592943092943 0.11131387983039945 0.17148061190487748 5.714858981094806 0.03841862992650836 0.036635385191211144 471.99467069797157 -2.673937095033389 0.27290339228560434 VAASMPLS(ph)PGGQMEEVAGAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAASMPLSPGGQMEEVAGAVK 21 0 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 VAASMPLS(1)PGGQMEEVAGAVK 137.44 3.4484e-06 33197000.0 53246.0 51991.0 48233.0 49120.0 47267.0 56801.0 59702.0 48203.0 67875.0 58377.0 True False 52959.32945218672 53721.48900577683 55023.787151248485 55338.58696361295 53286.17227654161 52874.48056517177 56813.98617621215 51800.15262987434 51148.11572840269 54651.329880935824 0.9690400868115137 0.9829859423881402 1.0068151547478186 1.0125753039161973 0.9750205968021571 0.9674875374554448 1.0395718878202584 0.9478296821454647 0.9358988306384257 1.0 15.737968982295435 1.6151298122840003 24.999999999999996 0.9563973090264567 0.9926012176262705 0.23546297573296748 0.026056872706784202 0.736014573010295 2524.993765962186 0.01191244145946247 0.0064351847671513095 41.222071503508445 -1.6151298122840003 0.03620390859981382 VAAYDKLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAAYDKLEK 9 1 P35579 P35579 MYH9 Myosin-9 0 ; 121.83 0.00054982 2604800000.0 3348300.0 3142700.0 3202700.0 2485300.0 2099400.0 3097100.0 3722900.0 3004800.0 5865900.0 3449700.0 False True 3330273.1248310995 3247302.869697734 3653612.3216325655 2799938.7251764527 2366746.145881302 2883004.7667892003 3542809.104140901 3229033.434065236 4420327.544032965 3229537.192563241 1.0311920644542587 1.0055009978443359 1.1313114244498734 0.8669783186346209 0.7328437496652104 0.8926990447510522 1.0970021067721534 0.9998440152665945 1.368718574974704 1.0 21.622896004264078 1.4011468767354949 6.820798125772603 1.1887483668179515 0.9665887618859593 0.282768330987473 0.13723874247490497 0.2757657867399581 18.809756214508152 0.09482998919984334 0.03507299948314762 25.185285404804407 -1.4011468767354949 -0.22215960493199216 VADAKGDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_BT-474_Trastuzumab_2h_R1 7 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861-2;P13861 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR 219.7 1.163e-32 7529500000.0 6490030.0 5200180.0 5616240.0 4503917.0 4878483.0 6930560.0 6266650.0 6404520.0 9863630.0 6290590.0 True False 6455088.399590115 5373264.847724813 6406957.774766813 5074112.430402985 5499728.89301584 6451466.699983397 5963508.198572247 6882457.803893596 7432870.552370472 5889119.160554947 1.0961042260489486 0.9124055230049847 1.0879314206580035 0.861608042233066 0.9338797098643842 1.095489244502816 1.0126316068650052 1.1686735513847275 1.2621362125180793 1.0 22.489620434665078 2.050805898059411 1.6535719778397537 1.1572059448994902 0.9818145703161002 0.3000941601396665 0.09758002732497775 0.39962033550023157 2.058122595002909 0.05761043258132756 0.02956615406531023 112.4102459558401 -2.050805898059411 -0.17539137458339005 VADEDDVDNEEAALLHEEATMTIEELLTR ddPTM_BT-474_Trastuzumab_2h_R1 21 VADEDDVDNEEAALLHEEATMTIEELLTR 29 0 O15355 O15355 PPM1G Protein phosphatase 1G 0 ;;;;;;;;;;;;;;;;;;;; 341.56 9.813099999999993e-106 2536941000.0 1051515.0 1071899.0 990311.0 994079.0 979821.3 1066494.0 1064347.0 973444.0 1175737.0 1119756.0 False True 1045853.7600742985 1107576.510238372 1129738.1808624791 1119929.2994747825 1104595.7346991545 992769.7800368347 1012860.4694096154 1046087.3343284748 885992.370418638 1048292.2134086571 0.997673880142227 1.0565532168143694 1.0776939544261137 1.0683369437927888 1.0537097581860493 0.9470353469560895 0.966200508268748 0.9978966942118049 0.8451769068642795 1.0 19.999609496192576 2.7419122683214887 24.34299153312326 0.9562761566938821 1.0535826378834772 0.5502961394241985 0.0448382066151542 157.75483905317842 1145773.3782239356 0.01371113868181695 0.01401867139449196 551.965925571449 -2.7419122683214887 0.09730648118959506 VADKIQLINNMLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VADKIQLINNMLDK 14 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 178.03 1.8509e-06 929250000.0 1442210.0 1311490.0 1269230.0 1207930.0 1230220.0 1796920.0 1723040.0 1477640.0 2289720.0 1802790.0 False True 1434445.3016045936 1355142.1518375534 1447926.551655073 1360853.814148148 1386881.2249147806 1672703.1498946927 1639689.972547999 1587909.0001038837 1725449.1866760706 1687734.3987538305 0.8499236033014096 0.8029356709433353 0.8579113826939689 0.8063198896419717 0.8217413983733517 0.9910938303620307 0.9715331830403492 0.9408524239811343 1.0223463999727016 1.0 20.686656452190334 2.7406254357737247 24.999743805603103 0.9770504669555979 0.8268701490524376 0.9027947011280949 0.025754330567052144 53.91784409418843 652811.7507799173 0.007941155738728447 0.008052579032890353 550.3328482922395 -2.7406254357737247 -0.15018031790316033 VADMALHYANK ddPTM_BT-474_Trastuzumab_2h_R1 2 VADMALHYANK 11 0 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 113.93 0.0013261 3548200000.0 6980900.0 6860400.0 6623000.0 5757000.0 5116500.0 6525600.0 7478300.0 5942800.0 9983900.0 7231300.0 False True 6943315.610050907 7088744.2668006215 7555460.831852017 6485835.609721493 5768055.94712855 6074500.631610094 7116546.059119745 6386281.91292694 7523501.6224058885 6769792.242972589 1.0256320077264476 1.0471140047405623 1.1160550517181667 0.9580553400961664 0.8520285025166178 0.8972949853691233 1.0512207470631179 0.9433497637325942 1.1113341964394388 1.0 22.690680129175806 3.7196065746365936 24.48202620203336 0.9663222866318494 1.0613517202590588 0.24006845248259556 0.07229479627577366 826.7437545149426 1067865.0751096716 0.01974138630767968 0.03064490650449328 5243.322548733997 -3.7196065746365936 0.09502943362720939 VADPDHDHTGFLTEY(ph)VATR ddPTM_BT-474_Trastuzumab_2h_R1 6 VADPDHDHTGFLTEYVATR 19 0 P28482;P28482-2 P28482 MAPK1 Mitogen-activated protein kinase 1 1 VADPDHDHTGFLT(0.044)EY(0.956)VATR;VADPDHDHTGFLT(0.093)EY(0.907)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR 269.51 2.5438999999999995e-32 16630600000.0 5253130.0 7545150.0 6179400.0 7238950.0 6172630.0 5877920.0 6287070.0 1477388.0 6941080.0 4441490.0 True False 5224847.731757612 7796285.756610513 7049405.807692339 8155400.327773726 6958677.842455601 5471593.225535373 5982940.4051602725 1587638.1945842542 5230543.839706846 4158030.3056490975 1.2565679775491623 1.874994933543049 1.6953714353921423 1.9613614447912522 1.6735514969675775 1.3159098956305513 1.4388881189807234 0.3818245846903256 1.2579378828962915 1.0 21.987468842587877 2.1744864382682887 1.8987190318183058 0.8364200996797514 1.699252353196847 0.5431468231638614 0.29822676424111044 0.22055649421882906 1.5698491210354915 0.15079285480996346 0.09099934425587033 149.4467373843437 -2.1744864382682887 0.8628322535170957 VADPDHDHTGFLTEYVATR ddPTM_BT-474_Trastuzumab_2h_R1 4 VADPDHDHTGFLTEYVATR 19 0 P28482;P28482-2 P28482 MAPK1 Mitogen-activated protein kinase 1 0 ;;; 159.19 1.9586e-11 2135450000.0 2819150.0 3397280.0 3034220.0 3239370.0 3181160.0 3298750.0 3250710.0 683569.0 3500820.0 2324750.0 False True 2803972.009637012 3510356.4111008747 3461411.8020869773 3649473.9098599097 3586261.8697874434 3070715.1769222394 3093460.7383818757 734580.3898730502 2638089.819584635 2176382.464681389 1.2883636287004818 1.612931765472009 1.5904427913104464 1.6768532043811397 1.64780865862768 1.4109262626189079 1.4213773491483916 0.3375235749202698 1.2121444012694882 1.0 21.053500678951504 1.9018967206623383 7.301493084912194 0.7933094030656628 1.5436583004774456 0.6350075588706334 0.23340604770084017 0.14493882678337122 9.445294639609484 0.09583854644433532 0.059519143642744216 79.78049391425141 -1.9018967206623383 0.7503488974117828 VADSSKGPDEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VADSSKGPDEAK 12 1 O60506-2;O60506;O60506-4;O60506-3;B7Z645;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ; 114.56 0.00095231 539640000.0 877320.0 779660.0 652440.0 685150.0 734840.0 1030060.0 1020900.0 976400.0 1813600.0 1081050.0 False True 872596.6065994164 805610.5117855776 744297.880889858 771889.9197499884 828417.5182620825 958854.376700424 971515.1667832744 1049263.9260587378 1366662.5809949362 1012056.4634665314 0.8622015056458093 0.7960134052463557 0.7354311817153588 0.7626945211199817 0.8185487155771504 0.9474317010101613 0.9599416651671849 1.0367642161631596 1.3503817527273088 1.0 19.948858350750434 2.0939341648681236 1.1228613654150692 1.1540121489801687 0.7882943634665676 0.7004628356079405 0.09399304403128958 0.2656921129204489 0.6250369400780682 0.06747221439375685 0.0337160734065976 124.14640985515851 -2.0939341648681236 -0.3657177855136011 VADWTGATYQDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 VADWTGATYQDKR 13 1 O15371-2;O15371;O15371-3;B0QYA5;B0QYA6;B0QYA8 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ; 127.71 0.00027853 1406980000.0 257633.0 266648.0 260244.0 275650.0 224637.0 302800.0 299199.0 283233.0 376760.0 337610.0 False True 256245.93255371708 275523.21748788 296884.0931186017 310547.2617369685 253243.1904221864 281868.1487145301 284725.601318825 304369.284688032 283912.5463253481 316063.4407575368 0.8107420837397394 0.8717339051536916 0.939318044526231 0.9825472411255562 0.8012416425487755 0.8918087711724967 0.9008495276657064 0.963000605063729 0.8982770852739885 1.0 18.269854641953383 -4.999999619100252 0.04644552475566557 1.4325248264793737 0.6723236167642624 0.3202532807770937 0.05251070510390885 827.0998907351561 2.8524377318798892 46.00462905601427 11.440788606264894 1.0000008770544667e-05 4.999999619100252 -0.7602012097151113 VADYCENNYIQATDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VADYCENNYIQATDKR 16 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0;B6VEX4;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-11 A0A0A0MRT6 ABI1 Abl interactor 1 0 186.75 2.3268000000000003e-09 168340000.0 95909.0 101130.0 95585.0 74299.0 82176.0 139190.0 122200.0 119090.0 166050.0 131950.0 False True 95392.63660049156 104496.05091562397 109042.53716028607 83705.245781952 92640.62650468797 129568.1229180164 116288.71915066705 127977.10052676684 125129.2024560041 123528.83803192146 0.772229692437007 0.8459243410726557 0.8827294006611481 0.6776170416200424 0.7499514119994266 1.048889676146183 0.9413892416005445 1.0360099112540497 1.0129553912234575 1.0 16.914488355347515 2.739159224322566 24.99974862456686 1.006657854192161 0.7884236867182605 0.7878682327310074 0.05762761922269171 26.007744423330184 1086184.0652408581 0.01895703879946538 0.019031916659857467 548.4780152151286 -2.739159224322566 -0.21823416747390045 VAEAHVPNFIFDEFR ddPTM_BT-474_Trastuzumab_2h_R1 2 VAEAHVPNFIFDEFR 15 0 Q12768;E7EQI7 Q12768 KIAA0196 WASH complex subunit strumpellin 0 ; 164.62 1.471e-06 188762000.0 274810.0 305560.0 315330.0 296230.0 274270.0 287790.0 293500.0 261910.0 337660.0 305510.0 False True 273330.4534942611 315730.3798850794 359725.7231025063 333732.68762685364 309196.6587743471 267895.75468479056 279302.28372111934 281455.0541520317 254448.21741219104 286012.09023972973 0.9556604871673811 1.1039057111901822 1.2577290799175351 1.1668481823517511 1.0810614981876623 0.9366588470447021 0.9765401297791769 0.9840669809311963 0.8896414735437146 1.0 18.125716608014717 2.8750833941797316 3.9664297360687937 0.9605980206472344 1.1291897701232971 0.5178295259363082 0.07549116506694055 0.19786023935855748 5.375436896329722 0.024783979530027894 0.026603865051352614 750.0382194907497 -2.8750833941797316 0.1685917494760627 VAEEHAPSIVFIDEIDAIGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAEEHAPSIVFIDEIDAIGTK 21 0 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ; 196.62 9.5462e-22 490690000.0 176600.0 168551.0 169424.0 146638.0 148296.0 202418.0 187135.0 195109.0 244250.0 202983.0 False True 175649.20522210433 174161.11814376898 193277.42654019268 165202.35576486716 167180.6165807436 188425.32010071885 178082.56512487805 209669.02432342694 184057.8602823187 190028.45115751043 0.9243310891194526 0.9165002244817048 1.0170973102337673 0.8693559030691385 0.8797662432251855 0.991563731393765 0.9371363290082774 1.1033559608904926 0.9685805423407738 1.0 17.535855910208586 1.770579453595963 24.99999999999998 1.0339388992662237 0.9339051829324572 0.3754384065580889 0.05290595461240261 26.69466440238225 20853.426688465737 0.024005830019936912 0.013316660476143 58.962983919088146 -1.770579453595963 -0.10003371633376656 VAEFHTELER ddPTM_BT-474_Trastuzumab_2h_R1 3 VAEFHTELER 10 0 K7EJR3;R4GMR5;P48556;K7EJC1;K7ERW6 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 ;; 180.07 2.0378e-06 2821310000.0 1841020.0 2286780.0 2092390.0 2190110.0 2086460.0 2273100.0 2082290.0 1965930.0 2480150.0 2246390.0 False True 1831108.1528765527 2362894.089912297 2386980.3246200876 2467377.7014429644 2352158.313582689 2115965.9473018437 1981561.677579726 2112637.6793902637 1868950.26480734 2103023.4669687618 0.8707026724318297 1.12357000624349 1.135023152195545 1.1732525766815967 1.1184650815965564 1.006154225350484 0.9422442063549071 1.0045716144268042 0.8886968187288903 1.0 21.00403351805795 2.567961502971051 4.041946310907396 0.9641672857330436 1.0936289662459533 0.3357671599282954 0.08277489735161359 0.26640322872903666 7.8570420618710575 0.028166215205801273 0.025972911658126138 369.79539867035254 -2.567961502971051 0.12946168051290974 VAEIEHAEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VAEIEHAEK 9 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ;;; 172.59 5.6072e-05 11134300000.0 16836000.0 16013800.0 14044500.0 13127600.0 13482900.0 17946500.0 17627600.0 15634800.0 23086400.0 17240200.0 False True 16745356.846655462 16546809.652453482 16021843.523017606 14789552.813996863 15199867.395590622 16705900.69651689 16774885.644028654 16801548.16790574 17397066.061910827 16139915.675922189 1.037512040514343 1.0252104152649513 0.9926844628388781 0.9163339580553186 0.9417563078266916 1.035067408774573 1.0393415914219257 1.0409935532049022 1.0778907654309544 1.0 23.944129705389393 2.600780664059858 7.351758304752374 1.0419429182757325 0.9820309657115773 0.3572432990127459 0.03749542047486648 0.31218781405445406 17.41073617864939 0.013330522179545161 0.01254378496253107 398.82342983876646 -2.600780664059858 -0.05991195256415516 VAEKLDEIYVAGLVAHSDLDER ddPTM_BT-474_Trastuzumab_2h_R1 6 VAEKLDEIYVAGLVAHSDLDER 22 1 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;; 208.17 4.3302e-23 5596174000.0 4177960.0 4367610.0 4075110.0 4108190.0 3936690.0 4906900.0 4858390.0 4437220.0 7094310.0 5177370.0 False True 4155466.327574989 4512983.258573997 4648850.066508904 4628286.432777787 4438004.136910285 4567697.55260015 4623371.114847869 4768347.888146614 5346012.359383652 4846945.814030536 0.8573370710161623 0.9310983517724063 0.9591297788087085 0.9548871826419448 0.9156289975562588 0.9423867581473592 0.953873076415362 0.9837840304184123 1.1029651587827656 1.0 22.208644523446726 1.5385969675438311 2.8142055983579772 1.0510277266929333 0.9320812058970787 0.6275563112958843 0.03678081438925535 0.14435954994141614 2.482536696147893 0.025680450833851197 0.009460601569449372 34.561848928461906 -1.5385969675438311 -0.11894652079585466 VAELALSLSST(ph)SDDEPPSSVSHGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VAELALSLSSTSDDEPPSSVSHGAK 25 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 VAELALSLSS(0.073)T(0.526)S(0.401)DDEPPSSVSHGAK;VAELALSLSS(0.011)T(0.566)S(0.423)DDEPPSSVSHGAK;VAELALSLSS(0.002)T(0.751)S(0.248)DDEPPSSVSHGAK;VAELALSLSS(0.02)T(0.946)S(0.034)DDEPPSSVSHGAK 327.17 3.4580999999999983e-87 2912940000.0 1207210.0 1525500.0 1410560.0 1410060.0 1530800.0 1824450.0 1870820.0 1668400.0 2074470.0 1944980.0 True False 1200710.5154936414 1576275.3453157763 1609154.5871926898 1588573.4514232911 1725738.3062375411 1698330.0657933424 1780321.2893735766 1792904.4799635373 1563244.664973843 1820849.7112188442 0.6594231847338501 0.8656811902727798 0.8837382773977268 0.8724352381394116 0.9477653732785902 0.9327129281067962 0.9777420280237524 0.9846526426189228 0.8585248169259587 1.0 20.796180419795444 5.54705882336371 0.7395583759980261 0.9505966562347155 7.698832913972261e-13 0.7900372990861236 0.04306531244330374 3.4769508427646123 0.6036479217798846 0.01533651482416549 3.6221019649969306 352418.6014295202 -5.54705882336371 -0.9505966562339456 VAELALSLSSTS(ph)DDEPPSSVSHGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAELALSLSSTSDDEPPSSVSHGAK 25 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 VAELALSLSS(0.001)T(0.171)S(0.827)DDEPPSSVSHGAK;VAELALSLSS(0.005)T(0.235)S(0.76)DDEPPSSVSHGAK 263.92 2.0081999999999998e-45 1074550000.0 472380.0 558920.0 532140.0 521200.0 586780.0 687860.0 640810.0 659600.0 724530.0 741330.0 True False 469836.7585663517 577523.314325725 607060.6865562028 587183.8665601595 661502.9548824562 640309.8572482716 609811.5721680763 708822.7013809341 545979.2897045987 694017.6847154562 0.676980960159513 0.8321449540043157 0.8747049245655674 0.8460647033813007 0.9531499981209688 0.9226131716093019 0.878668635681951 1.0213323334426958 0.7866936271637625 1.0 19.404612899958245 5.69042649906731 0.6644361481758091 0.9305444167131507 4.743395971828914e-14 0.5624796276982106 0.06444676838204129 6.806399515495321 0.8852293820388019 0.024102274163448234 6.3951146624606725 490260.0431055608 -5.69042649906731 -0.9305444167131033 VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(ph)PEQEGQLMPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPR 43 1 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(1)PEQEGQLMPR;VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(1)PEQEGQLMPR;VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(1)PEQEGQLMPR;VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(1)PEQEGQLMPR 262.66 2.3031999999999982e-67 1438390000.0 97532.0 107607.0 120430.0 120180.0 125504.0 141653.0 145595.0 130607.0 154812.0 142946.0 True False 97006.89854882382 111188.63394519493 137385.49720367475 135394.77567766706 141486.19047951174 131860.86152529495 138552.0136230881 140353.55754890793 116660.65697451902 133823.06389777223 0.7248892360058924 0.8308630120001752 1.0266204733484796 1.0117447003088755 1.0572631231010627 0.9853373378599656 1.035337329661861 1.0487994629694353 0.8717529966556168 1.0 17.02996725486638 4.388953535332052 3.1194342765713334 1.0118358015057605 0.7374091239795318 0.771295429078432 0.05063703065028998 0.10277898564688841 1.9060697104391926 0.012303678256280048 0.04610316101886256 24488.012333968367 -4.388953535332052 -0.2744266775262286 VAGGLLGS(ph)GTR ddPTM_BT-474_Trastuzumab_2h_R1 5 VAGGLLGSGTR 11 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 VAGGLLGS(0.955)GT(0.045)R;VAGGLLGS(1)GTR;VAGGLLGS(0.989)GT(0.011)R;VAGGLLGS(0.998)GT(0.002)R;VAGGLLGS(0.832)GT(0.168)R 135.5 0.00012451 758203000.0 1008227.0 1076503.0 1048084.0 1050216.0 1061671.0 1161302.0 1076868.0 1147490.0 1308648.0 1221851.0 True False 1002798.8178565516 1112333.7515951938 1195645.117090563 1183173.2379189262 1196868.508832973 1081023.9261508605 1024775.780804751 1233121.5306361532 986149.2353847924 1143871.4231007313 0.8766709243756003 0.9724290065573564 1.0452618125990831 1.0343585948774365 1.0463313311810698 0.9450572016394045 0.8958837156949478 1.0780245976365845 0.8621154576198818 1.0 20.125493464377566 4.7078090410400915 3.9555537298418524 0.9935819643275693 0.8691324938559849 0.1988385475728921 0.06599190417112669 0.3202370328227356 10.028122624002224 0.015505784175926697 0.10769285377370467 51028.058064964025 -4.7078090410400915 -0.12444947047158439 VAHALAEGLGVIACIGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAHALAEGLGVIACIGEK 18 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 ; 211.9 2.5124e-16 613020000.0 1150530.0 1103590.0 923510.0 897170.0 813290.0 1166350.0 963250.0 1048310.0 1602790.0 1166180.0 False True 1144335.6743159008 1140322.3260157583 1053532.1807071809 1010751.6300110887 916857.6607525024 1085722.969792575 916653.9175276593 1126540.215410318 1207803.88078566 1091753.3939830703 1.0481631480356506 1.0444870904916475 0.9649909828661526 0.9258058052135191 0.839802894871257 0.9944763861292025 0.8396162746821503 1.0318632592478914 1.1062973446587603 1.0 20.058215585420527 -0.5773380557677723 6.46233073586197 0.9999998568634452 0.9720876466217784 0.003148061987547579 0.08387852846001707 0.0 0.0 0.08267688202228876 0.019487127975106853 0.2646439342515793 0.5773380557677723 -0.02791221024166679 VAHFLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAHFLEK 7 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ; 90.986 0.016736 1733970000.0 3861100.0 4037000.0 3815800.0 3512000.0 2779700.0 3744100.0 3957500.0 3329700.0 5928300.0 3998800.0 False True 3840312.26660854 4171369.1045819703 4353031.472471829 3956618.839906532 3133678.318427287 3485279.1796633815 3766060.6058818703 3578179.121874002 4467349.900150128 3743593.160455078 1.02583590203528 1.1142688122859192 1.162795016951753 1.0569040679157449 0.8370776909012067 0.9309983831789309 1.0060015724101978 0.9558140985167929 1.1933321033226454 1.0 21.835992226124166 3.468175108907989 24.96526143863471 0.9788828807491143 1.1035556104998046 0.24835957396506536 0.08931296880494087 241.06831791393282 672726.6019833838 0.024797646270384274 0.033622862180363214 2938.834360410703 -3.468175108907989 0.12467272975069021 VAHHGENPVSCPELVQQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VAHHGENPVSCPELVQQLR 19 0 Q15648;Q15648-3 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 ; 142.78 8.7744e-08 751410000.0 168270.0 224076.0 172439.0 206180.0 193047.0 195203.0 185093.0 119026.0 218688.0 184357.0 False True 167364.05301655468 231534.2342031977 196716.91233334277 232282.36685988816 217630.3911707854 181709.07606843568 176139.34446607553 127908.3245217813 164795.27266906717 172591.1784240316 0.9697138321019246 1.3415183575278196 1.139785440539943 1.345853067236171 1.2609589502662701 1.0528294535541252 1.020558212038663 0.7411058067378683 0.9548302188666271 1.0 17.396999201009603 2.3191647138505402 2.078830049406661 0.8774628951029166 1.2193511540203024 0.531336983219935 0.1241106067398908 0.2088525763654333 1.8470333599716355 0.05314707779549936 0.038054014673700114 208.52816130099367 -2.3191647138505402 0.3418882589173857 VAHLGCHSDLVTDLDFSPFDDFLLATGSADR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAHLGCHSDLVTDLDFSPFDDFLLATGSADR 31 0 A0A0A6YYL4;P57737;P57737-3;I3L167;I3L2Y6;I3L1M1;I3NI06;I3L1G9;I3L426 A0A0A6YYL4 CORO7-PAM16;CORO7 Coronin;Coronin-7 0 119.85 9.1731e-06 54246000.0 34759.0 47100.0 38955.0 48531.0 30235.0 51138.0 37205.0 20597.0 49437.0 38440.0 False True 34571.861406087955 48667.69502744874 44439.52539707012 54675.019624004475 34085.24803311477 47602.95042590363 35405.25201309794 22134.05272944676 37253.913771860716 35986.726289860286 0.9606837011964885 1.3523790587520454 1.2348865812112373 1.5193107365092515 0.947161677296518 1.3227919106194543 0.9838419790653149 0.6150615799604786 1.0352126356755456 1.0 15.135177245907636 2.054422252020964 5.307930344760985 0.8304373009240877 1.2278282875923494 0.38378244402525985 0.19433810615420122 0.1614092940501726 9.687687558299883 0.07238885695934981 0.051934600784025224 113.35018989146832 -2.054422252020964 0.39739098666826167 VAHPIRPKPPSATSIPAILK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAHPIRPKPPSATSIPAILK 20 2 Q9UMS4;F5GY56 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 0 ; 69.737 0.0117 1938530000.0 1758310.0 1760180.0 1504090.0 1490760.0 1443630.0 1896590.0 1948320.0 1722520.0 2596800.0 2058250.0 False True 1748843.4543266045 1818766.5272487188 1715852.798215357 1679490.0631489316 1627467.7234346091 1765483.1973926357 1854072.3182948236 1851063.1891793297 1956853.435337255 1926890.7228435213 0.9075986684630607 0.9438867008320829 0.8904774816099925 0.8716062842787995 0.8446082095579077 0.916234209061583 0.9622093750904362 0.9606477249772148 1.0155497725628766 1.0 20.877843325658354 1.9733167272520773 1.4762318069580609 0.9982017286616303 0.8931355450617434 0.7347379377599486 0.026923542006735468 0.23609040124680136 0.9575986548101496 0.020544840666040717 0.00959713052247144 94.04088927038354 -1.9733167272520773 -0.10506618359988684 VAHSDKPGSTSTASFR ddPTM_BT-474_Trastuzumab_2h_R1 3 VAHSDKPGSTSTASFR 16 1 Q9P0L0-2;Q9P0L0 Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A 0 ;; 237.01 5.7314e-20 2391520000.0 1259730.0 1572820.0 1863770.0 1346720.0 1783810.0 2422020.0 1702430.0 1493760.0 2074810.0 1834450.0 False True 1252947.7536491596 1625170.362910234 2126172.615820754 1517214.6139176863 2010967.6300297794 2254591.4582218146 1620076.9569858455 1605231.9563595846 1563500.8765296093 1717373.830448338 0.7295719379408877 0.9463113587133015 1.2380371577373428 0.8834504095835686 1.170955091067619 1.3128134470485266 0.9433455478723044 0.9347015355069911 0.910402178494499 1.0 20.711772682415482 2.063527900663523 24.999990106035483 0.9405707052221236 1.0557636919386362 0.0805879717507666 0.16282396499931595 153.2814233277764 60319.00579382836 0.06279960884439853 0.04638058011557505 115.75183929123227 -2.063527900663523 0.11519298671651257 VAHSFNCTPIEGMLSHQLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VAHSFNCTPIEGMLSHQLK 19 0 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ;;; 284.88 3.4306000000000003e-40 2917350000.0 2545900.0 2708760.0 2559210.0 2388728.0 2296790.0 2876180.0 2861550.0 2448320.0 3700180.0 2817340.0 False True 2532193.157276083 2798919.4391200016 2919524.5229479126 2691140.7198781986 2589272.5923591116 2677356.4463994615 2723125.894317444 2631026.0707170544 2788320.2188717714 2637534.9491538713 0.9600605133548723 1.061187621425795 1.1069140615120585 1.0203241935207434 0.9817017185648128 1.0150979979462889 1.0324511131846918 0.9975322114920582 1.057169012970339 1.0 21.33075877997316 3.5001383356888187 24.850547462837664 1.012978630867097 1.047742704588133 0.09467933562284336 0.03884832436200124 1393.2747711146794 1504253.8996661955 0.010238933525496926 0.015739697651581976 3163.2850999478965 -3.5001383356888187 0.03476407372103596 VAIEHLDK ddPTM_BT-474_Trastuzumab_2h_R1 6 VAIEHLDK 8 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ;;;;; 162.25 0.0003428 9791410000.0 15832100.0 15457800.0 13625800.0 13154100.0 12764300.0 16675900.0 16668900.0 15237700.0 21851800.0 16750800.0 False True 15746861.732711682 15972303.52856259 15544194.202423245 14819407.711279752 14389757.945066521 15523134.283846205 15862561.625618286 16374814.549472805 16466716.689118398 15681749.602918606 1.0041520959996044 1.0185281574442375 0.9912283129128806 0.9450098417922475 0.917611765870077 0.9898853557103806 1.0115300924500177 1.0441956391412608 1.0500560910661205 1.0 23.902583193220806 2.1384230081290867 2.866833071204115 1.034869769972527 0.9754613967115509 0.4020819101422851 0.02981387037681489 0.2737360662384134 4.5003239572130935 0.014626795089399165 0.009751485550697712 137.53809606646527 -2.1384230081290867 -0.059408373260976255 VAIHYINPPNPAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAIHYINPPNPAK 13 0 P78406;E9PQ57 P78406 RAE1 mRNA export factor 0 102.4 0.0016924 702160000.0 1030200.0 982010.0 962310.0 1071900.0 943310.0 1093900.0 1270800.0 1019100.0 1287600.0 1219700.0 False True 1024653.5176659808 1014695.6092124187 1097794.883451534 1207602.4300956167 1063434.9370635839 1018281.2677636214 1209326.5490725664 1095150.416884944 970288.2329560429 1141857.7017622946 0.8973565761167738 0.8886357797879548 0.9614112877263463 1.057576988999465 0.9313200194930801 0.891775977157267 1.059086913549861 0.9590953541713083 0.8497453154263804 1.0 20.122951442657914 4.22245816015287 7.660498879401762 0.9666803522771348 0.8928101572519456 0.17086109039453956 0.06209997538407995 0.22926739340628546 70.09295169248148 0.015403254955123472 0.03556486025064546 16690.070076503234 -4.22245816015287 -0.07387019502518921 VAILAQLYHEKPLVFLER ddPTM_BT-474_Trastuzumab_2h_R1 2 VAILAQLYHEKPLVFLER 18 1 Q96F63 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 0 ; 170.19 9.8332e-12 177564000.0 177304.0 216579.0 205855.0 187065.0 189568.0 214174.0 212045.0 208932.0 291370.0 226164.0 False True 176349.41496432622 223787.70109023005 234837.59467626415 210747.4098197935 213708.36114243415 199368.65549136628 201787.5732594368 224523.5667751989 219565.76765796973 211730.01989125818 0.8328975506397109 1.0569483779634297 1.1091369792383419 0.9953591367347467 1.0093436974699763 0.9416173275464644 0.9530418660663815 1.0604238685213903 1.0370082039889095 1.0 17.691866309100238 4.7459857293236825 24.68796842214147 1.0183740588200132 0.8328974459012978 0.5735663095561977 0.04790619822705511 593.8301619777912 1974385.6146612363 0.01236775675576873 0.12827572393043551 55716.74404173967 -4.7459857293236825 -0.18547661291871542 VAILVDDMADTCGTICHAADK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAILVDDMADTCGTICHAADK 21 0 B1ALA9;P60891;A0A2R8Y7H4;P60891-2;B7ZB02;P11908;P11908-2 B1ALA9;P11908 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 0 ; 316.14 1.0447999999999999e-66 568340000.0 584950.0 550250.0 490670.0 486070.0 460400.0 654830.0 615500.0 546480.0 763260.0 640650.0 False True 581800.6941940549 568564.7386168505 559752.0710199054 547606.4121621198 519029.21099540393 609563.1434040149 585725.9135616662 587261.1125692122 575164.80016001 599763.1685119398 0.9700507212497707 0.9479820843742454 0.9332885052089724 0.913037747084028 0.8653902711017696 1.0163397410954553 0.9765953368141942 0.9791550121796472 0.9589865306118074 1.0 19.194033403384545 2.7191466770337462 24.997923898797193 0.9836672425163177 0.9268642328923357 0.5203364672498034 0.028872637751033343 746.401437364882 961086.2159164167 0.009752230699577273 0.009207503001797186 523.777305352613 -2.7191466770337462 -0.05680300962398199 VAIQLNDTHPALSIPELMR ddPTM_BT-474_Trastuzumab_2h_R1 2 VAIQLNDTHPALSIPELMR 19 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ; 190.71 1.1234999999999999e-14 2222300000.0 531910.0 618260.0 537300.0 568070.0 577480.0 576830.0 470760.0 525040.0 592310.0 575280.0 False True 529046.2556607573 638838.4103539372 612947.1697046797 639987.6037544713 651018.6550078753 536955.0998117648 447987.5403221607 564221.1508990985 446343.1370473696 538565.1378780132 0.982325476441418 1.1861859697621873 1.1381114866063133 1.1883197755355466 1.2088020728057842 0.9970105044812368 0.8318168199435727 1.047637715879962 0.828763515599979 1.0 19.038761319504175 2.5755583012434906 5.0682939756956635 0.9370936637406853 1.1446529506109786 0.5831688244196189 0.08571865630863339 0.1574686895095533 6.340254329625477 0.027204660263471524 0.025381692695111327 376.320867535305 -2.5755583012434906 0.20755928687029335 VAKPVVEMDGDEMTR ddPTM_BT-474_Trastuzumab_2h_R1 3 VAKPVVEMDGDEMTR 15 1 P48735;H0YL11 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ;; 179.14 6.2252e-07 3618700000.0 1817580.0 1732530.0 1742090.0 1501110.0 1959670.0 3502220.0 1819800.0 1572630.0 2228280.0 2154080.0 False True 1807794.3512321217 1790196.2137135006 1987361.1294822723 1691150.3720877229 2209222.358625899 3260119.774739104 1731769.3216889016 1689987.636253333 1679150.2514222497 2016604.7701993312 0.8964544654198305 0.8877278483956719 0.9854985760476167 0.8386127004552117 1.0955157853799624 1.6166379366527321 0.8587549465717692 0.8380361195348587 0.8326620447576717 1.0 20.94349693044634 VALENDDRS(ph)EEEKYTAVQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VALENDDRSEEEKYTAVQR 19 2 Q99700;A0A2R8Y5A6;Q99700-4;Q99700-2;Q99700-5;H0YH87;A0A5F9ZHW5;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;V9GY86;A0A5F9ZI57;A0A2R8Y7E6;A0A5F9ZHX3;A0A5F9ZHH4;F8W0B5;A0A5F9ZH85;F8WB06;F8VRK6 Q99700;F8WB06 ATXN2 Ataxin-2 1 VALENDDRS(0.999)EEEKYT(0.001)AVQR;VALENDDRS(1)EEEKYTAVQR 223.44 1.1479e-19 504940000.0 211107.0 211320.0 148489.0 165246.0 232150.0 220464.0 222958.0 226429.0 315400.0 217310.0 True False 209970.4233681924 218353.65845436256 169394.960510475 186166.12665694574 261712.9264391464 205223.8425964334 212172.66975772835 243326.2817631646 237673.89614347313 203441.0897515487 1.0320944683525715 1.0733016556341974 0.8326487078758164 0.915086165161129 1.2864310093834135 1.0087629929974415 1.042919451605588 1.196052783930353 1.1682688901919032 1.0 17.634251569531383 3.271690791024573 24.999968133676557 1.1213901691688146 0.9618101776620775 0.3507982667850533 0.10238401943445505 212.36988461277633 160252.5791599139 0.028682279465121575 0.0388335514566357 1869.3507261640782 -3.271690791024573 -0.15957999150673707 VALGHGLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VALGHGLK 8 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 ; 102.71 0.0049121 1184710000.0 2578200.0 2950500.0 2791300.0 2523900.0 2405200.0 3060200.0 3040700.0 2734100.0 4333400.0 3257300.0 False True 2564319.2576649482 3048705.6088850857 3184290.77758547 2843425.481218704 2711487.9632626954 2848655.5769359446 2893609.7243979853 2938132.4254784887 3265491.6345850523 3049416.3252851656 0.8409213384220819 0.9997669336278596 1.0442295960646475 0.9324490912052823 0.8891826087437015 0.934164204905525 0.948906090783583 0.9635064917558378 1.0708579236978015 1.0 21.5401016988196 1.3781798510721182 5.170071732289102 1.0343426729139307 0.946033142828305 0.31262409714803485 0.05453359790825003 0.26242023690029564 10.062319776825264 0.03915341777129579 0.013937976158173297 23.888003338266504 -1.3781798510721182 -0.0883095300856257 VALLSGGGSGHEPAHAGFIGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VALLSGGGSGHEPAHAGFIGK 21 0 H0YCY6;Q3LXA3-2;Q3LXA3;E9PJG8 H0YCY6 TKFC;DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) 0 150.65 4.0073e-08 400970000.0 554350.0 690200.0 641500.0 641820.0 669950.0 908150.0 848360.0 547400.0 964400.0 751910.0 False True 551365.4411940749 713172.8897652896 731817.6239820427 723074.3461927123 755264.1613952452 845371.7280551529 807321.5857500805 588249.7676408775 726736.5422979249 703922.4600574627 0.7832758186875666 1.0131412623303309 1.0396281771181202 1.02720738038915 1.0729365864154858 1.2009443880880621 1.1468899368322147 0.835674099094462 1.0324099365128936 1.0 19.42505699328288 4.7438787641079685 3.587165582549924 1.0389114263269208 0.7523046028270874 0.4238713797401258 0.09059778768579696 0.32321338005872186 7.440944707556479 0.024638793271509057 0.25113557696834876 55447.09074942687 -4.7438787641079685 -0.28660682349983335 VALS(ph)DDETKETENMR ddPTM_BT-474_Trastuzumab_2h_R1 4 VALSDDETKETENMR 15 1 Q15054;H0YD46;Q15054-3;Q15054-2 Q15054 POLD3 DNA polymerase delta subunit 3 1 VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR 295.79 2.8267e-44 10886500000.0 4113420.0 3061210.0 2729120.0 2523110.0 2726160.0 3870500.0 4097490.0 3481290.0 5371300.0 3902640.0 True False 4091273.8037639232 3163100.5243094754 3113356.374063718 2842535.467299702 3073320.3167837313 3602941.445176974 3899278.754768145 3741081.5374324326 4047615.086732514 3653570.1739817946 1.119801621137361 0.8657560615189205 0.8521408446551523 0.7780158398331248 0.8411827802486996 0.9861426696644933 1.067251638557846 1.0239522875662368 1.1078520170645239 1.0 21.800875486721452 2.532314860770354 4.0233200395352 1.0481147028860747 0.8822078885151822 0.4186459532689458 0.08788128425830218 0.2175427922180275 7.16940751480305 0.03068845906118596 0.027832740736831264 340.65507298307256 -2.532314860770354 -0.1659068143708925 VALSEPQPERR ddPTM_BT-474_Trastuzumab_2h_R1 4 VALSEPQPERR 11 1 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;Q9BXP5-5;H7C3A1;H7C1K0 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 ;;; 122.77 0.00061565 1269400000.0 909240.0 1155220.0 989360.0 1089630.0 1052610.0 1006290.0 1147790.0 1005890.0 1345300.0 1175840.0 False True 904344.7528660597 1193670.799354762 1128653.2883287193 1227577.04627772 1186653.64419173 936727.5408518626 1092267.0127164002 1080954.619605924 1013768.8410964294 1100796.8845127283 0.8215364392736005 1.0843697108419277 1.025305671016976 1.1151712577939494 1.0779950969038277 0.850954026152162 0.9922511846496515 0.9819746356607945 0.92094087052688 1.0 20.070116861351462 2.772159380683161 24.999519625303268 0.9545374631113277 1.0332211720764173 0.16044007562600526 0.08503529560348076 1145.4707669900624 852297.8533613039 0.025482964891914022 0.027027167743876618 591.7787697916724 -2.772159380683161 0.07868370896508958 VALVEQDAPMAPGRS(ph)PLATTVMDFIHVPILPLNHALLAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VALVEQDAPMAPGRSPLATTVMDFIHVPILPLNHALLAAR 40 1 A0A087WXR4;Q8NG45;Q8NG42;P06401-5;P06401;Q8NG44;P06401-2 A0A087WXR4 PGR;PR Progesterone receptor 1 VALVEQDAPMAPGRS(0.57)PLAT(0.215)T(0.215)VMDFIHVPILPLNHALLAAR 111.0 3.6283e-06 86934000.0 24530.0 39421.0 34751.0 35465.0 43852.0 32301.0 28889.0 25744.0 28921.0 40480.0 True False 24397.933205539215 40733.104154502296 39643.638738893205 39954.865363691635 49436.2922688324 30068.107898375263 27491.52870330295 27665.148005383184 21793.807071545274 37896.53174332839 0.6438038544209107 1.074850448858642 1.0461020287396718 1.054314564570295 1.3045070351994827 0.7934263774327763 0.7254365357099671 0.7300179391812966 0.575087114017552 1.0 15.209778199828195 2.5038803452915768 23.52493170281845 0.7373906152186132 1.0321967891454158 0.3421594086316241 0.17972401065588017 353.43696396084016 310719.5758629441 0.05666997370561967 0.05324476561375045 319.06586591979715 -2.5038803452915768 0.29480617392680264 VALVTFNSAAHNKPSLIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VALVTFNSAAHNKPSLIR 18 1 Q86VP6;Q86VP6-2;A0A0C4DGH5 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 273.13 3.1967999999999997e-39 753430000.0 710000.0 896080.0 884340.0 844270.0 850960.0 960220.0 956910.0 910600.0 1101600.0 946560.0 False True 706177.4388884159 925905.4811082024 1008847.3851789231 951154.4954350457 959324.7119649185 893842.2515147474 910620.607548812 978553.5959331082 830125.4406837353 886149.7304092136 0.7969053249751726 1.0448634687059375 1.138461538224527 1.0733564123478474 1.0825763175732317 1.0086808367046294 1.0276148333626396 1.1042756797784317 0.9367778516395792 1.0 19.757190962232954 4.736468094532554 6.026237862396049 1.0549970244407054 0.7902857501828809 0.6456233208385957 0.05513523265448313 0.07271051700184057 13.03417127529478 0.012733023471010584 0.07926282653060479 54508.98491628638 -4.736468094532554 -0.2647112742578245 VAMSHFEPNEYIHYDLLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAMSHFEPNEYIHYDLLEK 19 0 A2A274;Q99798 A2A274 ACO2 Aconitate hydratase, mitochondrial 0 161.65 1.6843e-11 340040000.0 201980.0 199450.0 202450.0 153410.0 232910.0 307250.0 207240.0 154600.0 252170.0 212610.0 False True 200892.56212208787 206088.572679929 230953.20027305445 172831.69027051816 262569.7079342734 286010.5306887027 197215.0094663197 166137.0370428933 190026.0824048812 199041.04777542123 1.0093021734328675 1.0354073945212523 1.1603295041615729 0.8683218471876455 1.319173662261524 1.4369424492349412 0.9908258204550758 0.8346873114853492 0.9547080088690466 1.0 17.602706459553865 2.0107734920951925 24.903553058220478 0.911761856262649 1.1374763283857368 0.2773829564065212 0.1542976959684465 255.85247198034628 591415.3158140865 0.06109060651221407 0.04507549307290818 102.51171331424531 -2.0107734920951925 0.2257144721230877 VANILHDDCAFLSAFGDVSKPER ddPTM_BT-474_Trastuzumab_2h_R1 2 VANILHDDCAFLSAFGDVSKPER 23 1 Q9BS26 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 0 ; 233.91 2.8195e-37 664130000.0 859320.0 867610.0 763810.0 717610.0 676050.0 843740.0 858820.0 813330.0 1176250.0 815240.0 False True 854693.516599428 896487.8743686797 871347.8088444645 808459.3524217887 762140.9602377121 785414.2397503222 817275.5955890003 874024.8146060565 886378.9484424863 763210.685237921 1.1198657633219435 1.174626995806815 1.1416871195570764 1.0592872558771398 0.9985983883337858 1.0290923003855477 1.0708387754479949 1.14519467757922 1.1613817332315903 1.0 19.541721844197227 3.7756330619629637 7.143521216629778 1.072701923841699 1.148768040878612 0.31762204104237246 0.05246724316687484 0.3346381927831269 53.06966831389948 0.015160093785823137 0.027148911638045125 5965.310608973349 -3.7756330619629637 0.07606611703691302 VANPSGNLTETYVQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VANPSGNLTETYVQDR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ;; 210.07 2.4719e-11 389350000.0 121660.0 161928.0 148437.0 179564.0 170910.0 161915.0 178996.0 129187.0 145473.0 179536.0 False True 121004.9960776968 167317.67559245686 169335.63936246707 202296.78398888843 192674.37543706436 150722.19715691262 170337.27964887733 138827.58993829397 109623.12838833052 168077.8587714973 0.7199341838487109 0.9954771961958778 1.0074833211236927 1.2035897260204387 1.146340016735971 0.8967403455669923 1.013442703839128 0.8259719094055736 0.6522163549058756 1.0 17.358770162458676 1.6898441060186005 4.4454925495347775 0.7995050598610742 1.008090824310219 0.21629543907768112 0.14665307892693333 0.22532992962573745 10.423398571142004 0.08107594317961733 0.038997293115351606 48.960304032664276 -1.6898441060186005 0.20858576444914467 VANS(ph)PTMVNLLLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VANSPTMVNLLLGK 14 0 Q6UB99;A0A087WTN8;A0A2R8Y438 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 VANS(0.982)PT(0.018)MVNLLLGK;VANS(0.973)PT(0.027)MVNLLLGK 143.88 9.4476e-06 223850000.0 332928.0 334640.0 308703.0 301679.0 297272.0 405632.0 390471.0 333027.0 441676.0 395011.0 True False 331135.55263977795 345778.2901058483 352165.6991054231 339871.5304681549 335127.8271308115 377591.6145950202 371582.42598592595 357879.1658168407 332830.8679551828 369801.0597940689 0.8954424111823188 0.935038667272619 0.9523112218811206 0.919065863838841 0.9062381468496443 1.0210668806771122 1.0048170932577885 0.9677613309603084 0.9000268093891518 1.0 18.496389833731264 2.7560162380075997 24.988700579823057 0.9782025197601497 0.9239280368548193 0.4179493606643825 0.0336427352646119 894.3621707774959 1280327.7779613119 0.010653567150198108 0.011274546407112477 570.185590776045 -2.7560162380075997 -0.054274482905330435 VAPEEHPVLLTEAPLNPK ddPTM_BT-474_Trastuzumab_2h_R1 11 VAPEEHPVLLTEAPLNPK 18 0 P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed 0 ;;;;;;;;;; 327.53 8.339299999999997e-75 106033692000.0 25832929.0 24063367.0 22869597.0 20828817.0 21396710.0 27924211.0 27960319.0 24419454.0 32601132.0 26958839.0 False True 25693847.380572215 24864301.62398248 26089437.471499413 23465743.096573256 24121454.190263834 25993876.020092163 26607771.551178906 26241757.656954873 24567019.851387624 25238302.814396746 1.0180497305831362 0.9851812067885594 1.0337239260247386 0.9297670793928201 0.955747871307106 1.0299375600353131 1.0542615225299925 1.039759204489207 0.9734022145646735 1.0 24.589111561711928 2.7142373668713575 24.205354064069 1.0262706621503908 0.9842267573045446 0.19281169969996415 0.03440330528216918 749.2565693920802 745623.5654564718 0.011494126346891613 0.01084252113449064 517.889811130125 -2.7142373668713575 -0.04204390484584619 VAPLWHSS(ph)SEVISMADR ddPTM_BT-474_Trastuzumab_2h_R1 2 VAPLWHSSSEVISMADR 17 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 VAPLWHS(0.033)S(0.921)S(0.045)EVISMADR;VAPLWHSS(0.997)S(0.003)EVISMADR 215.75 3.5512e-15 1478120000.0 138365.0 132079.0 125277.0 131527.0 131972.0 146382.0 115990.0 117141.0 177534.0 148139.0 True False 137620.05821379684 136475.16967155848 142914.9126727956 148178.30471423283 148777.85194067215 136262.9568861635 110379.12057517076 125882.65624994518 133783.12453372017 138684.64219182142 0.9923237067839704 0.98406836917669 1.030502804161423 1.0684550385130624 1.0727781359877637 0.9825381868721386 0.7959000999007524 0.9076899522575168 0.9646570984311174 1.0 17.0814485082378 2.4678596855789334 24.984934447262848 0.9031471461553449 1.0291363417720707 0.46489643759124133 0.05614734288316698 157.89977595340548 425962.7639610343 0.01957432479860753 0.016397722608198297 293.67006921026723 -2.4678596855789334 0.12598919561672584 VAPVINNGS(ph)PTILGK ddPTM_BT-474_Trastuzumab_2h_R1 4 VAPVINNGSPTILGK 15 0 E7ESY4;Q13330-3;Q13330;H0Y4T7;F8W9Y9 E7ESY4 MTA1 Metastasis-associated protein MTA1 1 VAPVINNGS(0.644)PT(0.356)ILGK;VAPVINNGS(0.994)PT(0.006)ILGK;VAPVINNGS(0.622)PT(0.378)ILGK;VAPVINNGS(0.999)PT(0.001)ILGK 281.94 9.029299999999999e-34 3008040000.0 2231920.0 1813350.0 1613470.0 1386360.0 1335390.0 2169340.0 2203920.0 1854580.0 2767720.0 2474450.0 True False 2219903.590709626 1873706.2585567748 1840632.5514673514 1561873.033853307 1505444.0010233559 2019378.6318770743 2097307.969808007 1992978.176966421 2085652.4915479184 2316528.4825167744 0.9582889256331651 0.8088423141342519 0.7945650421995288 0.6742300151459489 0.6498707062681042 0.8717262261688818 0.9053667958916711 0.8603296665712331 0.9003353540820604 1.0 21.143532990237592 2.500724125628826 23.926398731082894 0.8986685263372146 0.772831246027655 0.3699610329484324 0.0853175150651922 537.2821013274997 544646.5887084377 0.029150547551612126 0.02730703136860607 316.7554716381532 -2.500724125628826 -0.12583728030955965 VAPYRPDQQVEEDDDFMDENQGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAPYRPDQQVEEDDDFMDENQGK 23 1 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 196.43 2.8676e-24 412150000.0 209770.0 172060.0 158280.0 179650.0 179860.0 244460.0 223310.0 214290.0 281570.0 209520.0 False True 208640.6216276379 177786.9130875337 180564.44820557724 202393.67158007043 202764.10488625852 227561.05559694176 212507.64217295792 230281.4079425715 212180.8463446979 196148.25422090333 1.063688394558259 0.9063904942396735 0.9205508808771986 1.0318402903149648 1.03372882767493 1.1601482587791025 1.083403178973138 1.174017117089542 1.0817371135291298 1.0 17.58158496948448 3.1999750059864542 1.9136761824621247 1.1133133298683981 0.9613783036549024 0.4397664599984843 0.0626679309464492 0.24742771439936603 1.8665076326623447 0.01932467110969834 0.026187855797472712 1584.801983146427 -3.1999750059864542 -0.15193502621349575 VAQGATEKS(ph)PEDK ddPTM_BT-474_Trastuzumab_2h_R1 5 VAQGATEKSPEDK 13 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 VAQGATEKS(1)PEDK;VAQGATEKS(1)PEDK;VAQGATEKS(1)PEDK;VAQGATEKS(1)PEDK;VAQGATEKS(1)PEDK 219.97 1.3067e-11 1745220000.0 2743844.0 1519617.0 1344716.0 1150773.0 1254447.0 2333900.0 2148386.0 2141631.0 3751240.0 2010710.0 True False 2729071.4487737264 1570196.5332171263 1534040.3243189985 1296460.7438085864 1414193.3897601026 2172562.9864096465 2044460.361548486 2301450.380201862 2826797.1660407176 1882384.7663445624 1.4497946953073575 0.8341528051495656 0.8149451439186791 0.6887331256543301 0.7512775363701815 1.1541545730996254 1.086101204228645 1.2226248434166258 1.5017106048569056 1.0 20.84413011968661 2.6050737111690783 5.187108810708089 1.2057264385704036 0.8872406675063732 0.27706885724038743 0.22971288718921756 0.29314963902828917 11.174520144130746 0.07653277897975135 0.07173005616993865 402.78539177398164 -2.6050737111690783 -0.3184857710640304 VAQGATEKS(ph)PEDKVQIAANEETQER ddPTM_BT-474_Trastuzumab_2h_R1 6 VAQGATEKSPEDKVQIAANEETQER 25 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 VAQGAT(0.291)EKS(0.709)PEDKVQIAANEETQER;VAQGAT(0.001)EKS(0.999)PEDKVQIAANEETQER;VAQGATEKS(1)PEDKVQIAANEETQER;VAQGAT(0.003)EKS(0.997)PEDKVQIAANEETQER;VAQGATEKS(1)PEDKVQIAANEETQER;VAQGATEKS(1)PEDKVQIAANEETQER 310.96 8.998699999999998e-75 7098250000.0 2479369.0 1559702.0 1483779.0 1391308.0 1402869.0 2330859.0 2393842.0 2200864.0 4032680.0 2350376.0 True False 2466020.352787793 1611615.7382102294 1692682.1859617315 1567447.450145975 1581516.0516939876 2169732.203581902 2278042.7170955115 2365103.6474409457 3038880.049143501 2200372.991421871 1.1207283321516603 0.7324284312219315 0.7692705702899616 0.7123553398703998 0.7187490747521034 0.9860747300755729 1.0352984362089679 1.074864878209865 1.3810749636495905 1.0 21.06931666910299 2.242723106835932 1.575138480876535 1.1578396394070527 0.8013823944813239 0.5039007324697166 0.14631015945701684 0.30842886352855575 1.514076029012495 0.07978748119828215 0.04851967528511691 174.87313943224294 -2.242723106835932 -0.35645724492572883 VAQLEQVYIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAQLEQVYIR 10 0 P62318;P62318-2 P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 0 114.4 0.0031649 68886000.0 93208.0 116380.0 129100.0 83922.0 66847.0 85132.0 108340.0 71872.0 148080.0 83064.0 False True 92706.1784843823 120253.63794680443 147276.15784268384 94546.51659528338 75359.56921678917 79247.02521917224 103099.1803010088 77235.45359862098 111587.66817034068 77762.78440533177 1.192166396732393 1.5464163078316844 1.8939156946209597 1.215832448880275 0.9690955614961516 1.0190867755725412 1.325816469786026 0.993218725245715 1.43497521370505 1.0 16.246792257133126 3.4995846387717853 24.112409688055973 1.1209318401622406 1.5461384213627376 0.4407515921690851 0.2124165901116253 423.31076222086836 454384.3994829407 0.0551857042785048 0.0846874685842956 3159.2546891773954 -3.4995846387717853 0.42520658120049704 VAQNS(ph)PSVENIQTSQAEQAKPLQEDILMQNIETVHPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAQNSPSVENIQTSQAEQAKPLQEDILMQNIETVHPFR 38 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 VAQNS(0.498)PS(0.498)VENIQT(0.003)SQAEQAKPLQEDILMQNIETVHPFR 130.25 6.5699e-09 76051000.0 32275.0 30292.0 33682.0 26736.0 28137.0 40922.0 37310.0 34238.0 43188.0 38255.0 True False 32101.234986089617 31300.250908099304 38424.13283080774 30120.774858696153 31720.080168935023 38093.15846002639 35505.17276195898 36793.01341704126 32544.896089550755 35813.53314824673 0.8963437048561949 0.8739783025186283 1.0728942233025343 0.8410444938234398 0.8857009454396123 1.063652622664828 0.9913898362104816 1.0273494453825613 0.9087317901541364 1.0 15.128217232863394 2.752006187325095 24.860350379926572 1.0016016384172972 0.9165445561617604 0.2748511688371378 0.06823613463829917 998.1307131578022 1845503.8382164938 0.020673003156612964 0.021815002258142153 564.9450234377555 -2.752006187325095 -0.08505708225553676 VAQNSPS(ph)VENIQTSQAEQAKPLQEDILMQNIETVHPFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAQNSPSVENIQTSQAEQAKPLQEDILMQNIETVHPFR 38 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 VAQNS(0.123)PS(0.652)VENIQT(0.123)S(0.101)QAEQAKPLQEDILMQNIETVHPFR 93.737 0.00021912 399060000.0 29614.0 34941.0 29635.0 28762.0 29460.0 35114.0 41394.0 35815.0 44466.0 35809.0 True False 29454.561514424706 36103.99006271946 33807.350407962345 32403.26625096569 33211.55637689966 32686.651829464983 39391.61407956396 38487.69716488499 33507.95011387341 33523.638962372694 0.878620651758147 1.0769710920477034 1.0084630265201249 0.9665796212438477 0.9906906709673338 0.9750329272473327 1.1750399210472808 1.1480763531692966 0.9995320063995173 1.0 15.032891140401212 2.2590664881233895 24.996897092995386 1.101832557071517 0.9878080803821995 0.29963053886396784 0.07018106612853964 243.6318243478102 296989.31374436355 0.02384874599198379 0.019932058576817967 181.57936296249923 -2.2590664881233895 -0.11402447668931759 VARPTSSEVDRFS(ph)PSGSVVPLTER ddPTM_BT-474_Trastuzumab_2h_R1 2 VARPTSSEVDRFSPSGSVVPLTER 24 2 Q5TC79;Q5TC79-2 Q5TC79 ZBTB37 Zinc finger and BTB domain-containing protein 37 1 VARPTSSEVDRFS(0.968)PS(0.032)GSVVPLTER;VARPTSSEVDRFS(0.997)PS(0.003)GSVVPLTER 229.7 1.3467e-33 1145680000.0 260630.0 340490.0 346580.0 311040.0 326260.0 402480.0 366950.0 316970.0 372380.0 348240.0 True False 259226.79703871548 351823.0038194488 395375.4514726371 350417.63210835046 367807.2771054746 374657.50493601034 349199.2266148711 340623.910941047 280611.9386363551 326015.0250567364 0.7951375768451231 1.0791619305221316 1.2127522386547365 1.0748511730321855 1.1281911839537613 1.1492031843342456 1.0711139051155694 1.0448104681119166 0.8607331474600601 1.0 18.314578929921787 1.409195789611747 4.824242995838391 0.9314612670227375 1.0816697367589179 0.2091503143955049 0.1078049117013795 0.29662055517634905 11.328917263598777 0.07485173039140532 0.027104258972527055 25.65640423601946 -1.409195789611747 0.1502084697361804 VARS(ph)PDKPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VARSPDKPGK 10 2 P55317-2;P55317;P55318 P55317-2 FOXA1;FOXA3 Hepatocyte nuclear factor 3-alpha;Hepatocyte nuclear factor 3-gamma 1 VARS(1)PDKPGK 58.32 0.058369 99568000.0 206340.0 175100.0 144100.0 149820.0 161840.0 226400.0 237490.0 191250.0 338100.0 217520.0 True False 205229.08836652906 180928.09764981482 164388.02746034684 168787.19663860925 182449.3646991663 210749.5008882747 226001.70140009755 205522.0461478223 254779.78530788887 203637.68737175866 1.0078148647988974 0.888480418261255 0.807257387284319 0.8288603097837841 0.8959508775312734 1.0349238572108355 1.1098225692747699 1.0092534874088586 1.2511425983873299 1.0 17.635645061158645 2.6773473996129087 3.060489492039827 1.084196006108647 0.8760007942302309 0.5965061975938244 0.08120511879401694 0.18295124226249165 3.3993782255876277 0.027593002107629022 0.02649876076941327 475.7156068678744 -2.6773473996129087 -0.20819521187841616 VAS(ph)DTEEADR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASDTEEADR 10 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 VAS(0.998)DT(0.002)EEADR;VAS(0.997)DT(0.003)EEADR 170.4 4.5496e-06 1264130000.0 1013380.0 958940.0 838290.0 937880.0 905280.0 1102670.0 977790.0 907800.0 1096230.0 948010.0 True False 1007924.0746771026 990857.7382085299 956313.9454527007 1056615.5118369965 1020562.0419850538 1026445.0183059784 930490.5621794661 975544.6457149956 826078.8052294209 887507.1901678058 1.1356798974062723 1.1164503783019302 1.077528110247631 1.1905430440932163 1.1499197452046452 1.1565483972156922 1.0484315760907055 1.0991963293621814 0.9307854791274758 1.0 19.759399282028724 1.489844565015801 1.6190050821496924 0.968863738866789 1.1324734471020057 0.6638567088141227 0.043513915263378077 0.2067688959154136 1.0388780249179252 0.036900382687019055 0.012136046967348059 30.89189606640606 -1.489844565015801 0.1636097082352167 VAS(ph)FSIPGSSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASFSIPGSSSR 12 0 Q14573 Q14573 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 1 VAS(0.99)FS(0.01)IPGSSSR;VAS(0.996)FS(0.004)IPGSSSR 82.705 0.01493 527370000.0 254100.0 304060.0 323590.0 291290.0 314390.0 379500.0 287660.0 258300.0 359430.0 361280.0 True False 252731.95383316404 314180.4532918485 369148.65930529893 328167.28413336363 354425.70296447666 353266.05824690865 273744.7868320862 277575.65762082307 270853.29261524574 338222.80109263083 0.7472351154821967 0.9289156505028242 1.0914363493908805 0.9702695473907058 1.0479060010723766 1.044477359615261 0.809362307767992 0.8206887788880974 0.8008132264893216 1.0 18.367614395906887 2.2293716849193785 24.99571307176938 0.8392139836303613 0.9786021667190431 0.21708153079182035 0.10320082569698606 253.06140248191468 688371.9186949722 0.03874482449009086 0.02901248353104779 169.57884966857418 -2.2293716849193785 0.13938818308868184 VAS(ph)GSDLHLTDIDSDSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 VASGSDLHLTDIDSDSNR 18 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 1 VAS(0.56)GS(0.44)DLHLTDIDSDSNR 135.91 4.7666e-06 926600000.0 225680.0 318200.0 268910.0 301350.0 295080.0 309450.0 270790.0 246550.0 338790.0 258740.0 True False 224464.9639554053 328791.09464403806 306770.1905923793 339500.87910188874 332656.6889238133 288058.4498669457 257690.8531817441 264948.81295553216 255299.74405341563 242226.99168154143 0.926671971596427 1.3573677002780244 1.2664575011346941 1.4015815361660207 1.3733262615140793 1.1892087164491536 1.0638403730024157 1.0938038371209406 1.0539690159264377 1.0 17.88600010988777 2.39377368280918 3.6153469451195868 1.064264637523181 1.278499621881475 0.380452500565876 0.12650994049653314 0.24471422954720953 6.3343128744438495 0.045768624620712794 0.03774652604785937 247.61313731802426 -2.39377368280918 0.21423498435829402 VAS(ph)PTSGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VASPTSGVK 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 VAS(0.749)PT(0.226)S(0.025)GVK;VAS(0.996)PT(0.003)S(0.001)GVK 122.69 0.00060704 292940000.0 1055940.0 911260.0 797060.0 800380.0 778570.0 1008790.0 884670.0 977690.0 1414700.0 980390.0 True False 1050254.9363659641 941590.7382316963 909279.1198302836 901708.0259351896 877716.2745540648 939054.7217362314 841875.1323324107 1050650.192409226 1066066.1410087866 917820.6708458917 1.1442920929183442 1.025898378780135 0.9906936602247844 0.9824446698331034 0.956304758036376 1.0231352938159146 0.9172544910723276 1.1447227391827148 1.1615189926222378 1.0 19.807852773441343 1.6780839422386555 9.467663823622845 1.113924534010381 1.0039618162464279 0.2862446555172776 0.06874954707391946 0.12854081941726184 17.887651111385573 0.03231454868682557 0.017305867248116256 47.6523082262505 -1.6780839422386555 -0.10996271776395306 VASEAPLEHKPQVEAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 VASEAPLEHKPQVEAS(0.5)S(0.5)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR;VASEAPLEHKPQVEAS(0.801)S(0.199)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR 240.26 1.5545e-24 4570790000.0 3000490.0 2722310.0 2718640.0 2452670.0 2573130.0 3041100.0 2808110.0 2517320.0 3443320.0 2815900.0 True False 2984335.695225779 2812920.442678857 3101400.88115751 2763177.7705220804 2900802.853363601 2830875.9149793787 2672270.9912780663 2705175.201091949 2594759.924124106 2636186.851186721 1.1320653139144266 1.067041375087876 1.1764723277340396 1.0481721996595925 1.100378318045915 1.0738525282094535 1.0136880054898618 1.0261697496420528 0.9842852842377366 1.0 21.330021200568012 2.35913129073019 0.8179572540077269 0.9926072716931612 1.1141555634122475 0.6684110225256943 0.03325134209481666 0.3622280788264168 0.4746730833528585 0.023709256038390938 0.015576875044726827 228.6289862808338 -2.35913129073019 0.12154829171908632 VASEAPLEHKPQVEASS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 VASEAPLEHKPQVEAS(0.205)S(0.795)PR;VASEAPLEHKPQVEAS(0.221)S(0.779)PR;VASEAPLEHKPQVEAS(0.141)S(0.859)PR 217.29 2.1941e-19 3689570000.0 1710200.0 1597930.0 1467020.0 1396150.0 1513410.0 1678710.0 1480900.0 1520190.0 1847430.0 1586770.0 True False 1700992.4732210843 1651116.1340809152 1673563.6644335713 1572902.4468495136 1706133.7928161477 1562664.7289582842 1409263.2094126241 1633634.297168409 1392155.6307937086 1485500.9800978552 1.1450631780189293 1.1114877446746285 1.1265988288498656 1.0588363575134774 1.1485241784921332 1.0519445963982776 0.9486787476369023 1.0997194340866714 0.9371623778410448 1.0 20.50251812635334 2.5145299119779994 6.170667740441293 1.0112536629464208 1.113970176487115 0.584951208943371 0.047693795339735584 0.15589226284458146 17.219447120907212 0.015259117294786989 0.014013164914716436 326.98656721757925 -2.5145299119779994 0.10271651354069422 VASGNDHLVMLTADGDLYTLGCGEQGQLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASGNDHLVMLTADGDLYTLGCGEQGQLGR 30 0 P18754-2;C9JW69;P18754;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754-2 RCC1 Regulator of chromosome condensation 0 ; 199.2 2.4241e-25 392030000.0 142902.0 170391.0 155303.0 151246.0 153901.0 150266.0 161181.0 148572.0 174981.0 167133.0 False True 142132.63150990466 176062.3614314655 177168.31248212513 170393.72809239823 173499.38010730583 139878.4651081159 153384.0592587863 159659.19707332933 131859.27717527267 156466.4288502396 0.9083905893061929 1.1252404923230015 1.1323087884347391 1.0890114214563495 1.1088601010595645 0.8939838797113422 0.9803001217954327 1.0204054521251051 0.8427320681133494 1.0 17.255493622797612 2.748623209633183 24.97403510319702 0.9574293535566154 1.079888607811977 0.39633826268820105 0.07656430956594927 722.406869026828 1792917.5463215595 0.023228859288192908 0.024375169569701937 560.5614264569056 -2.748623209633183 0.12245925425536153 VASGPSPGEGIS(ph)PQSAQAPQAPGDNHVVPVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR 32 0 Q14764 Q14764 MVP Major vault protein 1 VASGPSPGEGIS(0.994)PQS(0.006)AQAPQAPGDNHVVPVLR 195.42 5.4134e-20 297860000.0 25957.0 21653.0 29445.0 26965.0 29125.0 41160.0 29061.0 28499.0 36451.0 35676.0 True False 25817.25039609381 22373.70701548509 33590.60005947194 30378.76623521625 32833.896112600196 38314.70608021812 27655.208406199134 30625.74009498972 27468.13946837582 33399.12713623971 0.7729917698382246 0.669888974170481 1.0057328720733085 0.9095676695770227 0.9830764731864442 1.1471768685429138 0.8280218909131868 0.9169622897647308 0.8224208781364087 1.0 15.027522778875323 4.2396505641420985 24.999999536806246 0.9471045539878259 0.7214403247922264 0.4990900051507374 0.0921507127015172 22.558969170206797 517368.21109054505 0.02301466348251151 0.05625856976207079 17364.0314649493 -4.2396505641420985 -0.22566422919559948 VASGS(ph)DLHLTDIDSDSNR ddPTM_BT-474_Trastuzumab_2h_R1 1 VASGSDLHLTDIDSDSNR 18 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 1 VAS(0.008)GS(0.991)DLHLT(0.001)DIDSDSNR 230.29 1.1479e-19 0.0 65689.0 69878.0 75526.0 72282.0 63532.0 74878.0 78709.0 66572.0 85736.0 70587.0 True False 65335.337722734075 72203.84698785706 86159.40431623973 81432.8937887596 71622.42361633373 69701.86010385262 74901.54497242106 71539.94068576646 64607.511603540894 66082.07722742889 0.9886998179230228 1.0926388820883977 1.3038240916627433 1.2322992436890134 1.083840378834296 1.0547770746365288 1.1334623261711188 1.0825921897030222 0.9776858463632565 1.0 16.01197141677002 1.5186484174228119 0.9304404063015629 0.9844459790772 1.143312923417255 0.2751086740887365 0.08510956160823784 0.7282337813569547 1.2519935887112574 0.08353844847231573 0.032014762181196726 33.01021989987327 -1.5186484174228119 0.158866944340055 VASGSDLHLTDIDSDSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASGSDLHLTDIDSDSNR 18 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3 Q92614 MYO18A Unconventional myosin-XVIIIa 0 ; 208.38 6.3867e-16 635420000.0 511190.0 769340.0 693940.0 725710.0 729920.0 719110.0 734570.0 688750.0 705800.0 766720.0 False True 508437.8098385482 794947.0168241491 791640.7201653912 817584.8115912765 822870.9854252058 669399.6183028584 699036.0427700944 740148.022401635 531865.0472354571 717787.2731779827 0.7083405193121554 1.107496672801879 1.1028904380826154 1.1390349789450058 1.1463995199886563 0.9325877503220568 0.9738763403746798 1.0311523344857463 0.7409786535788518 1.0 19.45319681792267 2.7052829415566273 24.46487813438882 0.9485822350216558 1.0534393877509245 0.1182436525924564 0.13924277254531425 1109.2113117893978 815461.4615861952 0.04488439600795855 0.04232002140619223 507.3211188245416 -2.7052829415566273 0.10485715272926865 VASPLS(ph)PTSLTHTSRPPAALTPVPLSQGDLSHPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPR 35 1 I3L4Q4;Q9BUL5-4;Q9BUL5;I3L0Y2;I3L410;I3L1N0;Q9BUL5-3;I3L2W6 I3L4Q4 PHF23 PHD finger protein 23 1 VAS(0.1)PLS(0.84)PT(0.025)S(0.025)LT(0.008)HT(0.002)SRPPAALTPVPLSQGDLSHPPR;VAS(0.036)PLS(0.913)PT(0.042)S(0.008)LTHTSRPPAALTPVPLSQGDLSHPPR 214.78 1.2668999999999999e-36 2405120000.0 80419.8 189166.0 178414.0 210288.0 224279.0 166818.0 172668.0 181874.0 97178.0 172115.0 True False 79986.82873227968 195462.27595673804 203533.14039771224 236910.43923868542 252839.60124421853 155286.26430733298 164315.38918418487 195446.36141745897 73229.78401848576 161130.4733449349 0.4964103131569063 1.2130683408240752 1.2631573418269875 1.4703018884052241 1.5691606683421095 0.9637299579882006 1.0197660676663685 1.2129695727949823 0.4544750753739887 1.0 17.297869839903363 1.2585617567859526 24.99769066652906 0.7272374724656495 1.1704442669997819 0.2342618263971129 0.3049042013689011 282.8274115337439 353483.3712520503 0.20372375558670525 0.07418490563222811 18.136845639414783 -1.2585617567859526 0.44320679453413236 VASPSQGQVGSSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 VASPSQGQVGSSSPK 15 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 VASPS(0.001)QGQVGS(0.025)S(0.142)S(0.833)PK 91.657 0.0047555 0.0 101390.0 79946.0 71778.0 57096.0 67196.0 106180.0 93064.0 88220.0 115690.0 89781.0 True False 100844.12750548801 82606.95428162253 81883.71849443976 64324.34774581526 75753.0122981042 98840.0265208348 88562.13878099567 94803.424372083 87179.7496665771 84051.09971461869 1.1997954559534285 0.9828182446404686 0.9742135292989871 0.7653004893953527 0.9012733034464838 1.175951615819774 1.0536701968408915 1.1279260437278276 1.037223188781363 1.0 16.358979075185164 2.7476668168402987 24.995229586541598 1.0880351980235647 0.9551408511736232 0.20833333676783783 0.10989101570448989 962.4925025210966 2641905.058662132 0.03500478549815499 0.03665365191494245 559.3283299019296 -2.7476668168402987 -0.1328943468499415 VASPSQGQVGSSS(ph)PKR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 VASPSQGQVGSS(0.038)S(0.962)PKR;VASPSQGQVGS(0.005)S(0.344)S(0.651)PKR 205.92 1.3089e-11 1233630000.0 327440.0 279262.0 311850.0 279490.0 279880.0 388860.0 380490.0 337660.0 439140.0 350420.0 True False 325677.09942200367 288557.0668525561 355755.76935120806 314873.4053432451 315521.05902127206 361979.02347797947 362084.2450870484 362857.9038027379 330919.83117452386 328055.8955903441 0.9927488083576131 0.879597259891614 1.0844364455362627 0.9598163287894069 0.9617905462527496 1.103406548529146 1.1037272914588823 1.1060856051672743 1.0087300232145686 1.0 18.32358212287982 2.742921922951963 24.96073234669923 1.0770362985074715 0.9755010080398075 0.3526494002147158 0.058862495055577446 356.30469026089827 2039214.1769670309 0.0177803597076448 0.018275578054361537 553.2506374022331 -2.742921922951963 -0.10153529046766396 VASS(ph)PVMVSNPATR ddPTM_BT-474_Trastuzumab_2h_R1 3 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 VAS(0.027)S(0.973)PVMVSNPATR;VAS(0.002)S(0.998)PVMVSNPATR;VAS(0.003)S(0.997)PVMVSNPATR 309.08 1.1886999999999997e-55 618010000.0 812760.0 862790.0 793560.0 798200.0 765880.0 812560.0 794350.0 735070.0 970920.0 885380.0 True False 808384.1904661246 891507.4435824322 905286.3502528304 899252.0381587103 863410.2782735884 756389.6397604969 755924.2557883166 789924.6560098291 731649.7756614479 828874.2903880454 0.975279604929804 1.0755641162003764 1.0921877548271066 1.084907625422568 1.0416661347637828 0.9125504899016543 0.9119890248187376 0.9530089968649147 0.8827029431916861 1.0 19.660793789202568 2.8006780930557236 5.020614819235449 0.9294880560641007 1.0605725548565206 0.6785315924492777 0.04190800595584007 0.1175816278382418 6.0786730199474 0.012682940632652932 0.0133598137868439 631.9432699275659 -2.8006780930557236 0.1310844987924199 VASSTLLDDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 VASSTLLDDRR 11 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;;; 215.46 2.0521000000000003e-11 6935400000.0 2317150.0 2975350.0 2820610.0 2686570.0 1998780.0 2515170.0 2707680.0 2105950.0 3084990.0 2580800.0 False True 2304674.721859568 3074382.726112942 3217727.370818376 3026689.48653977 2253312.7853027633 2341302.2179733263 2576699.174057923 2263106.682797418 2324735.5512481057 2416091.1344659547 0.9538856746680567 1.272461407707824 1.3317905624158555 1.2527215730249264 0.9326273968555531 0.9690454902856305 1.0664743300866706 0.9366810094676532 0.9621886848907949 1.0 21.20424344317689 3.239921811874735 24.999737977724337 0.9777959070431506 1.2169164301088684 0.5487122985117485 0.09957721021911257 26.310364975182253 483208.66765862104 0.028301543281795346 0.03631879715940922 1737.4879922659998 -3.239921811874735 0.23912052306571785 VASWELR ddPTM_BT-474_Trastuzumab_2h_R1 2 VASWELR 7 0 J3KMX2;B9EGA3;Q92925-3;Q92925-2;Q92925 J3KMX2 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 0 ; 105.39 0.018466 277670000.0 251260.0 319930.0 295700.0 322150.0 331280.0 302490.0 329980.0 262220.0 392880.0 325770.0 False True 249907.24407761046 330578.6766482311 337331.989729525 362934.1569692161 373466.54434960295 281579.5782848682 314017.60675398615 281788.1879261801 296059.9883222818 304979.0796942713 0.8194242186320844 1.0839388622315416 1.106082391184622 1.1900296811605646 1.2245644675824565 0.9232750605947787 1.0296365477552611 0.9239590735491131 0.9707550715251337 1.0 18.218350757582918 2.7073978798757072 24.996283096961694 0.9665127586948017 1.0917872567132596 0.22957017546532565 0.10513480628603031 990.7052442663266 794664.7174927416 0.035059566275988024 0.03305759534499244 509.7977095061038 -2.7073978798757072 0.1252744980184579 VATLNS(ph)EEESDPPTYK ddPTM_BT-474_Trastuzumab_2h_R1 7 VATLNSEEESDPPTYK 16 0 Q00341;A0A024R4E5;Q00341-2;C9JIZ1;C9JZI8;C9J5E5;C9JHZ8;C9JES8;C9JK79;C9JHS7;C9JT62;C9JQ82;C9JHN6;C9JEJ8;C9JBS3;C9JMQ6 Q00341 HDLBP Vigilin 1 VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(0.999)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VAT(0.033)LNS(0.927)EEES(0.041)DPPTYK 383.39 3.2939999999999987e-121 5102502000.0 6155890.0 5582150.0 5134265.0 4708840.0 4918701.0 6257450.0 6206860.0 5615010.0 7600640.0 6392810.0 True False 6122747.372223674 5767948.488269064 5857124.884168618 5304978.661191763 5545068.41692508 5824887.209952883 5906610.469292228 6034030.5586430505 5727564.115358042 5984815.39264 1.0230469898458856 0.9637638105533489 0.9786642527640179 0.8864063990537978 0.9265228838544107 0.9732776748830393 0.9869327759977448 1.0082233390295672 0.9570160046041987 1.0 22.512875315869664 2.4472012639467 4.260376542966656 0.9902762185805859 0.9531890437179271 0.15455769466922598 0.03517134970015876 0.3707989021089709 15.452252048718847 0.013127769399990689 0.011170162798029506 280.0278744775541 -2.4472012639467 -0.03708717486265878 VATPVDWK ddPTM_BT-474_Trastuzumab_2h_R1 1 VATPVDWK 8 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 92.653 0.027045 74197000.0 383020.0 369790.0 307520.0 275400.0 289100.0 375590.0 371630.0 342800.0 448010.0 379420.0 False True 380957.8628775225 382098.2366072242 350816.14298824273 310265.6117626022 325915.17137005035 349626.3473437593 353652.8371355356 368381.47670312936 337603.93852643436 355205.0907621953 1.0725011346545377 1.0757116002682334 0.9876439052026681 0.8734830097644083 0.9175408231641755 0.9842943033094904 0.9956299792231894 1.0370951494885963 0.9504479167289169 1.0 18.438292732827374 4.196912990461584 4.931534584008262 0.969178548270127 1.075142855183025 0.49174289395881154 0.04332333583666836 0.17061923836081583 9.362537436172083 0.012546053377710802 0.029985939951099043 15736.675535188557 -4.196912990461584 0.10596430691289815 VATTAGLYGSNLMEHTEIDHWLEFSATK ddPTM_BT-474_Trastuzumab_2h_R1 1 VATTAGLYGSNLMEHTEIDHWLEFSATK 28 0 P07814;V9GYZ6;V9GZ76 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 241.59 1.4781e-45 557660000.0 301560.0 310940.0 304740.0 303380.0 281980.0 376650.0 345120.0 115150.0 438540.0 285640.0 False True 299936.4344664655 321289.4499328006 347644.74315243645 341787.87689374806 317888.48157359695 350613.0720387311 328425.22711356945 123743.07771985217 330467.6931349358 267410.21065129293 1.1216341879240628 1.201485347737028 1.3000428903059749 1.2781407114608827 1.1887671783338463 1.311143172823479 1.2281701073181572 0.46274627067705754 1.235808058077 1.0 18.028695028030917 1.895383789350959 15.344991883964108 0.8409695429326004 1.2379605446436073 0.38742270596021156 0.1877092801904742 1.34608573648418 194.26944693217598 0.07298797069155061 0.04697300269787976 78.5929860039274 -1.895383789350959 0.3969910017110069 VATTPGS(ph)PSLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VATTPGSPSLGR 12 0 E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;A0A087WWW7;H0Y4U1 E9PGF5 TNS1 Tensin-1 1 VATT(0.014)PGS(0.984)PS(0.002)LGR;VAT(0.003)T(0.252)PGS(0.745)PSLGR;VAT(0.001)T(0.135)PGS(0.857)PS(0.007)LGR;VAT(0.001)T(0.128)PGS(0.87)PS(0.001)LGR 203.97 1.2465e-07 1475700000.0 1218360.0 1216100.0 1073230.0 1115780.0 1154880.0 1373610.0 1348130.0 1107400.0 1590180.0 1323660.0 True False 1211800.4851325229 1256577.1533520261 1224331.4553176106 1257037.6335964997 1301947.1224899483 1278655.5738301373 1282915.8015432802 1190039.8112632607 1198301.446320316 1239182.8855576592 0.9779028578071318 1.0140368851096093 0.9880151425482566 1.0144084850161608 1.0506496963957372 1.0318538036092344 1.035291736591359 0.9603423555415849 0.9670093577680864 1.0 20.240957693538796 1.7242162370171505 9.761314820310126 0.9733188425812659 1.016732117249984 0.40286545521367 0.022352405986980038 0.09886747771553518 29.752067417979518 0.011228049188599404 0.00606251452586111 52.99272311740096 -1.7242162370171505 0.04341327466871803 VAVAGCCHGELDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VAVAGCCHGELDK 13 0 Q9UK59;F8WAY1 Q9UK59 DBR1 Lariat debranching enzyme 0 132.59 0.00011709 234550000.0 220680.0 193530.0 172310.0 145450.0 160970.0 218630.0 190260.0 205540.0 272280.0 219540.0 False True 219491.88339985308 199971.5290586445 196569.75025463107 163863.95508667565 181468.5753560603 203516.62269966205 181056.39693621846 220878.43851097196 205180.2423650753 205528.76924234992 1.0679375165285911 0.9729612540171805 0.9564099029992498 0.7972798926920782 0.8829351531905542 0.9902099032164434 0.8809296995435476 1.0746837988920297 0.998304242863131 1.0 17.64898082619413 1.7365406512743902 18.86894891854201 1.0272171529303686 0.932530434200146 0.24374585654111824 0.071492620014944 0.10960504752932171 732.1498825354124 0.03461115895895876 0.019166127667415985 54.51809238807383 -1.7365406512743902 -0.09468671873022261 VAVEEVDEEGKFVR ddPTM_BT-474_Trastuzumab_2h_R1 8 VAVEEVDEEGKFVR 14 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;;; 234.9 2.9069e-17 14386070000.0 6970480.0 6697140.0 6126210.0 6150630.0 6034160.0 7884640.0 8170550.0 7147880.0 10885150.0 7365240.0 False True 6932951.710173133 6920050.2563933795 6988727.1180281015 6929299.127361698 6802574.508731597 7339593.395246137 7775309.281967945 7681291.101799194 8202650.636037169 6895184.077500795 1.0054773929525065 1.0036063111025162 1.0135664312186443 1.0049476633948355 0.9865689490333716 1.0644521324957028 1.1276434674657965 1.1140081273339013 1.1896202543457366 1.0 22.717157636531542 2.493683309951434 3.324964625820404 1.116960943101778 1.003926029902666 0.5522852960514939 0.04430010299327794 0.1600621016936793 3.688217008226264 0.014681314807595986 0.012829557303110318 311.66161007859984 -2.493683309951434 -0.11303491319911196 VAVEYLDPS(ph)PEVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAVEYLDPSPEVQK 14 0 O43684;O43684-2;J3QT28 O43684 BUB3 Mitotic checkpoint protein BUB3 1 VAVEYLDPS(1)PEVQK;VAVEYLDPS(1)PEVQK 121.28 0.00012114 56156000.0 212751.0 199896.0 158395.0 162956.0 184516.0 213225.0 209347.0 219425.0 285490.0 233750.0 True False 211605.57225485815 206549.41752031608 180695.63920597947 183586.21289174468 208013.01888798416 198485.25762766058 199220.08582679767 235799.6077175733 215134.8148700067 218831.87487655666 0.9669778334359431 0.9438726311549945 0.825728150014298 0.8389372571765694 0.9505608769532526 0.9070216929760638 0.9103796507669552 1.0775377574706069 0.9831054776246126 1.0 17.73946336968361 1.7569154867738446 24.99999999999902 1.0253452659871014 0.9037135882300572 0.5384136573302738 0.048263342009400696 5.542895936723143 7557.2396625926485 0.023203633930692077 0.012867845679278593 57.13674383807056 -1.7569154867738446 -0.1216316777570442 VAVNDAHLLQYNHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VAVNDAHLLQYNHR 14 0 P17931 P17931 LGALS3 Galectin-3 0 ; 253.15 1.8517e-24 943290000.0 571290.0 624540.0 566370.0 509500.0 502110.0 538830.0 481990.0 368830.0 628030.0 527190.0 False True 568214.2381162863 645327.436357598 646109.9730237093 574002.6477597874 566050.7322608646 501581.9503693863 458674.30231939454 396353.96748079086 473260.421670848 493544.2828499335 1.1512933243501007 1.3075370514499822 1.3091225964422015 1.1630215721378703 1.1469097139414688 1.0162856055651985 0.92934781793199 0.8030768084113453 0.9589016388520237 1.0 18.912820009537576 2.751215001177594 1.3541688158983913 0.8914777508636246 1.2516575442709668 0.8121495228084714 0.06786936221113807 0.15777406665453597 0.5904214814696708 0.03009960776200042 0.028876956675276743 563.9167585224392 -2.751215001177594 0.3601797934073422 VAVTASEVQQAESEVS(ph)DIESR ddPTM_BT-474_Trastuzumab_2h_R1 4 VAVTASEVQQAESEVSDIESR 21 0 Q9BV36-2;Q9BV36-5;H7C3K9;H7C052;H7C190;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36 MLPH Melanophilin 1 VAVTASEVQQAESEVS(1)DIESR;VAVTASEVQQAESEVS(0.999)DIES(0.001)R;VAVTASEVQQAESEVS(1)DIESR;VAVTASEVQQAESEVS(0.999)DIES(0.001)R 301.72 3.8008999999999994e-55 1072768000.0 715333.0 701686.0 658246.0 704321.0 644408.0 735538.0 716224.0 759698.0 899765.0 748049.0 True False 711481.7266089672 725041.1943318556 750921.3152232013 793487.9663843403 726469.5390945402 684691.9893302117 681577.5088786206 816390.5224282794 678029.9719832968 700307.87238303 1.0159556313252833 1.0353177836837137 1.072273131341423 1.1330558996634352 1.037357379151667 0.9777014029562738 0.9732541011702851 1.16575945326766 0.9681884192963228 1.0 19.41762977979846 3.029476712922393 24.997648298572948 1.0322023683191341 1.0654882117197584 0.09178870399246264 0.06114955878664036 699.2176954513717 592965.6559707156 0.019081333565691565 0.022806286032861663 1070.2289951827884 -3.029476712922393 0.03328584340062424 VAWHIDPF ddPTM_BT-474_Trastuzumab_2h_R1 1 VAWHIDPF 8 0 M0R2P5 M0R2P5 0 82.26299999999998 0.048218 16530000.0 49261.0 55052.0 43351.0 59414.0 67918.0 61502.0 46680.0 53543.0 50397.0 50620.0 False True 48995.78424941164 56884.37254036322 49454.44398635317 66935.80630814542 76566.95471847495 57250.511500135435 44421.91006508298 57538.65054584496 37977.33463520168 47389.38826203763 1.03389779961901 1.2003609800958703 1.0435763321716014 1.4124640296689774 1.615698314042401 1.2080871604328618 0.9373809558260996 1.2141674044764497 0.8013890034876079 1.0 15.532276417244569 2.3784057500049793 6.254344429594707 1.0276584467547254 1.2689924831606276 0.31946554567636254 0.1862483366122658 0.3033160702818445 16.35950779855819 0.0691108953395076 0.057568348509833146 239.0043195150188 -2.3784057500049793 0.24133403640590223 VAWHIDPFGHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAWHIDPFGHSR 12 0 O00754;O00754-2 O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide 0 156.69 4.2442e-05 276830000.0 190450.0 283810.0 279300.0 222700.0 217690.0 244640.0 231630.0 175960.0 263230.0 206950.0 False True 189424.6383609844 293256.44428323186 318623.01228088007 250893.79716605428 245411.53115028146 227728.6126206161 220425.17198747132 189091.02870677537 198360.49360128865 193742.27382119113 0.9777145412044065 1.513642007494371 1.6445714504979125 1.294987367587156 1.2666906726653626 1.1754203567920942 1.1377236760982086 0.9759926162593275 1.023836923604808 1.0 17.56377925325154 2.5136710638602846 1.110769209557981 0.9983687958727667 1.3869375305623162 0.4525909291957867 0.16286914874864028 0.43142436227873654 1.0793952380997491 0.09591797284854296 0.07073355790378208 326.34056707245503 -2.5136710638602846 0.38856873468954944 VAYTEADYYHTELWMEQALR ddPTM_BT-474_Trastuzumab_2h_R1 1 VAYTEADYYHTELWMEQALR 20 0 P13674;P13674-2;P13674-3 P13674;P13674-2 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 0 187.31 2.9614e-17 80317000.0 58513.0 84401.0 69827.0 68981.0 71081.0 92826.0 97743.0 77395.0 98019.0 83990.0 False True 58197.97250940545 87210.23626351816 79658.03465283578 77713.98752721878 80132.74401990513 86409.15710889999 93014.7976754799 83170.6079038468 73863.53083730851 78629.68629254337 0.7401526732903232 1.109126086794378 1.0130783729247808 0.9883542869302859 1.0191156520931497 1.0989380879304662 1.1829475871163524 1.0577507278155587 0.9393847835345257 1.0 16.26278647805375 4.745064449086773 24.799857972768528 1.051893276611717 0.740152515913816 0.6514524477892062 0.06683382732632982 426.7504864291542 1627200.1678935252 0.01665606264307944 0.1599237482528962 55598.67593093017 -4.745064449086773 -0.311740760697901 VAYVSFGPHAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VAYVSFGPHAGK 12 0 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 ; 198.81 1.7893e-07 2870500000.0 3039400.0 3603300.0 4109800.0 3028800.0 1943510.0 3089400.0 3925200.0 2710700.0 5199800.0 3516700.0 False True 3023036.2081090864 3723233.6622591536 4688424.116978018 3412245.7694501374 2191004.478413721 2875837.0496653537 3735323.080279853 2912986.198655696 3918378.963750251 3292261.1952016507 0.9182249004164827 1.1309047009045423 1.424074166354487 1.0364444274419538 0.6655014133164857 0.87351424420905 1.134576772257301 0.8847980235897644 1.190178643620726 1.0 21.650647367439063 3.483826621689881 24.99681775917159 0.9472928206285643 1.1675862282527727 0.20023865368134508 0.17745838729024638 442.0166859854573 1647786.4490204083 0.04913519992026215 0.06908022264083392 3046.6784569812817 -3.483826621689881 0.22029340762420835 VCDGAIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VCDGAIR 7 0 P42345 P42345 MTOR Serine/threonine-protein kinase mTOR 0 ; 80.377 0.069972 68658000.0 4684.3 5756.0 4077.6 5276.1 4434.200000000001 4436.5 5423.200000000001 4751.6 5109.1 5090.5 False True 4659.080249274657 5947.584980424524 4651.690636865438 5944.0537190292835 4998.8690864374885 4129.815197397663 5160.8590973641385 5106.188520135905 3850.030763432523 4765.619931803683 0.977644108415355 1.248019159214296 0.9760934995722318 1.247278172428574 1.0489441369583843 0.8665850941735964 1.0829355196629928 1.0714636486345488 0.807876166905188 1.0 12.21844818281923 3.001080044731973 24.99979800428877 0.9852586408704509 1.116714993170561 0.2525567229824357 0.11667903825699615 54.80924927866869 1268607.0476472639 0.03241940438942771 0.03845151494885225 1002.4899897877511 -3.001080044731973 0.1314563523001102 VCEALEHGHVEWSSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VCEALEHGHVEWSSR 15 0 A0A0A0MTR2;Q8N543;Q8N543-2 A0A0A0MTR2 OGFOD1 Prolyl 3-hydroxylase OGFOD1 0 ; 190.44 1.2535e-07 280310000.0 128366.0 146072.0 159840.0 157704.0 146253.0 156651.0 181255.0 85542.0 195149.0 150691.0 False True 127674.89171880335 150933.91821761124 182344.08264581417 177669.31023024465 164877.45264055335 145822.08508678933 172487.0031886591 91925.57841347446 147057.14381262733 141073.7713669441 0.9050221772742632 1.0698935511195777 1.292544183649296 1.2594071067123642 1.1687321537020088 1.0336583737277036 1.2226723757175717 0.6516135318617713 1.0424130750011638 1.0 17.10609025942198 1.7571851808967334 24.999999999652353 0.8670866925500265 1.141539787796348 0.35383299037195803 0.14545210110352608 7.28982525375862 9794.921716495766 0.06681499211226925 0.03705284292740257 57.172236413340464 -1.7571851808967334 0.27445309524632155 VCEEIAIIPSKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VCEEIAIIPSKK 12 1 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73 H3BNC9 RPS17 40S ribosomal protein S17 0 ; 118.37 0.0010154 2425500000.0 1999270.0 2046500.0 2154950.0 1840030.0 1725720.0 2380860.0 2260890.0 2116300.0 3347900.0 2582550.0 False True 1988506.1524597777 2114616.515364627 2458348.2288388186 2072977.6093374714 1945480.2128561877 2216276.752141596 2151522.11326147 2274229.0523536517 2522854.904561615 2417729.447967709 0.8224684338155672 0.8746290934836103 1.0168003830640575 0.8574067752204332 0.8046724229179225 0.9166769069237876 0.8898936624484567 0.9406466278786153 1.0434810671980987 1.0 21.20522138053083 1.4686921808176303 2.734976598091386 1.0215117640985643 0.885187515595069 0.492019055207923 0.05568399737232086 0.2264442152778583 3.2679227943289733 0.04493032058692342 0.01522190725830777 29.42335426461637 -1.4686921808176303 -0.13632424850349523 VCEIHFHEINNK ddPTM_BT-474_Trastuzumab_2h_R1 2 VCEIHFHEINNK 12 0 H0YHB7;O43347;B4DM51;Q96DH6-3;B4DHE8;Q96DH6-2;Q96DH6 H0YHB7;B4DHE8 MSI1;MSI2 RNA-binding protein Musashi homolog 1;RNA-binding protein Musashi homolog 2 0 ; 194.96 4.956000000000001e-07 1324510000.0 1139360.0 1081340.0 1032030.0 956090.0 1063010.0 1224150.0 1084250.0 123930.0 1480110.0 712700.0 False True 1133225.8123547968 1117331.748216167 1177330.8534344302 1077130.895969884 1198378.022546099 1139527.3918391406 1031800.6852627721 133178.28590378864 1115356.7229578807 667214.8758268312 1.6984420662840767 1.6746205588290257 1.7645452703305649 1.614368826287144 1.7960900842641372 1.7078866690839387 1.5464293777684979 0.19960329232580495 1.6716604550755851 1.0 19.347791929050253 1.9516811787042607 13.153922771258843 0.8691508067742423 1.7030126193771997 0.4965790529428318 0.3362433548623598 1.4818215887485426 402.4747884401106 0.12998808186294106 0.08354154873873884 89.47077076965265 -1.9516811787042607 0.8338618126029574 VCENIPIVLCGNKVDIK ddPTM_BT-474_Trastuzumab_2h_R1 2 VCENIPIVLCGNKVDIK 17 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 ; 151.57 2.2358e-07 940930000.0 532770.0 573080.0 508830.0 548350.0 525970.0 666170.0 673820.0 521920.0 1057110.0 691500.0 False True 529901.625516311 592154.6213658247 580468.8411703561 617771.0537764077 592949.1618315652 620119.2358955032 641224.7523576316 560868.3206560595 796599.4050482771 647367.8779770643 0.8185479130848765 0.9147111580763422 0.8966599377532316 0.954281290117232 0.915938498036773 0.9579085663522425 0.9905106110012298 0.8663826855430269 1.2305204384523074 1.0 19.304226256059103 4.363079872250664 0.2409440457278005 1.0458306313036292 0.7222781345229004 0.3445234418455929 0.08576922581282324 11.368304616425393 0.6655099611345481 0.13366312254416374 1.0945958724281097 23071.71467730956 -4.363079872250664 -0.32355249678072884 VCEVCSAYLGLHDNDR ddPTM_BT-474_Trastuzumab_2h_R1 5 VCEVCSAYLGLHDNDR 16 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9NQ29-3;Q9NQ29;Q9NQ29-2;A8MYV2;B8ZZ10 Q9Y383;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 ;;;; 242.93 5.6702e-20 11425710000.0 3350950.0 3748150.0 3849370.0 3524600.0 3917040.0 4322960.0 3996320.0 3663360.0 4696210.0 3968580.0 False True 3332908.857525545 3872904.9069454824 4391327.836676161 3970813.998614616 4415851.825884962 4024123.9503532476 3803002.7341750734 3936738.525365152 3538891.9714899766 3715301.826727725 0.8970762034860099 1.0424199937361662 1.1819572248707044 1.0687729244630269 1.188558031575661 1.0831216784068172 1.023605325095375 1.059601267666713 0.9525180285572862 1.0 21.825047987688407 -0.806612700031277 6.6769861120439025 0.9999991111891039 1.062281473428786 0.031117664641675424 0.08484268328900371 1.2205472302595192e-09 1.8279911912823845e-10 0.08190953747078912 0.019306262985973335 0.15609439182565168 0.806612700031277 0.06228236223968209 VCEVCSAYLGLHDNDRR ddPTM_BT-474_Trastuzumab_2h_R1 5 VCEVCSAYLGLHDNDRR 17 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9NQ29-3;Q9NQ29;Q9NQ29-2;A8MYV2;B8ZZ10 Q9Y383;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 ;;;; 168.05 1.3932e-09 7817710000.0 2701090.0 3328510.0 3074640.0 3263380.0 3175010.0 3155930.0 3229280.0 3032030.0 3827370.0 3381200.0 False True 2686547.6315593105 3439297.443223214 3507522.5867500333 3676523.573398113 3579328.7037413465 2937767.987360129 3073067.389352424 3258295.4749363726 2884165.9476304534 3165408.9212090396 0.8487205597857397 1.0865254786448133 1.108078821427698 1.1614687596172728 1.1307634472623551 0.9280848258423552 0.9708279296119044 1.0293442509449473 0.9111511401594318 1.0 21.593960454599497 2.7357071216460898 24.9949608699441 0.9748792757627674 1.0757080143484212 0.24759385209372342 0.0854043891481801 377.2659366018992 3304605.9916289533 0.027825176941177244 0.027267988445786703 544.1355763841863 -2.7357071216460898 0.10082873858565378 VCGDSDKGFVVINQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VCGDSDKGFVVINQK 15 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 158.81 8.665799999999999e-09 0.0 248980.0 194710.0 199220.0 185910.0 218690.0 256150.0 227950.0 239210.0 342240.0 298310.0 False True 247639.5193442787 201190.8046453197 227268.4443487179 209446.1869382183 246538.87522281695 238442.9534122417 216923.18764643668 257061.06488376774 257899.5377810466 279271.6004039596 0.8867336277160806 0.720412689132379 0.8137900309948438 0.7499730965671393 0.8827925033057585 0.853803082974924 0.7767463191125147 0.9204697667501285 0.9234721232234183 1.0 18.091309345442596 1.3291604659093799 0.7722452393992748 1.0026835512272785 0.8010635228048036 0.5736397390101949 0.05412085500647956 0.39355635233339237 0.5217356431596942 0.04875895595989952 0.019635235823900785 21.33833189875565 -1.3291604659093799 -0.20162002842247484 VCGS(ph)SQAAGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VCGSSQAAGSR 11 0 H9KV82;Q8N7U6-2;Q8N7U6 H9KV82 EFHB EF-hand domain-containing family member B 1 VCGS(0.5)S(0.5)QAAGSR 62.528 0.05179 774850000.0 85126.0 122200.0 96845.0 109230.0 97847.0 100310.0 93795.0 91326.0 106340.0 107390.0 True False 84667.69107438777 126267.35312854002 110479.93420816981 123058.50680039579 110307.23546539363 93375.80580434109 89257.77751830466 98141.20986403148 80133.93188299585 100536.27825879546 0.842160586613724 1.2559382077334207 1.0989061473290058 1.2240209099806214 1.0971883719570985 0.92877722769862 0.8878166077377736 0.9761770732292405 0.7970648334198238 1.0 16.617356662605392 2.7522095000742706 4.671117418509654 0.9178158634072744 1.12023357251464 0.39135815557908804 0.1152074091159869 0.18568333527034606 11.197844592100223 0.03461605331408717 0.035128369220628265 565.2095614885858 -2.7522095000742706 0.20241770910736556 VCGTLLEYLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VCGTLLEYLGK 11 0 F8VWW7;Q8NCJ5 F8VWW7 SPRYD3 SPRY domain-containing protein 3 0 ; 70.17 0.052499 1291130000.0 754200.0 2340990.0 2326440.0 2739400.0 2467100.0 1400990.0 1623460.0 1055880.0 636390.0 1418050.0 False True 750139.4709994977 2418908.4369916636 2653982.5302210185 3086207.7591229887 2781270.561352649 1304142.8588757233 1544927.0375805418 1134675.1272499994 479560.21168910805 1327548.834946315 0.5650560275094005 1.8220862188391602 1.9991600010167183 2.3247414165730427 2.0950419963007394 0.982369028201107 1.1637440348045782 0.8547144160582875 0.3612373413807418 1.0 20.3403335020214 2.656144390357656 5.689382397117425 0.8767770902665336 1.8075324489265887 0.4610860848900302 0.47969929222521157 0.21270653868255598 11.402878000632617 0.1627841378588688 0.15346846570264222 453.0481802872044 -2.656144390357656 0.9307553586600551 VCHANPSER ddPTM_BT-474_Trastuzumab_2h_R1 7 VCHANPSER 9 0 P53618;E9PP73 P53618 COPB1 Coatomer subunit beta 0 ;;;;;; 155.84 7.2344e-05 1098590000.0 415667.0 503267.0 488515.0 533316.0 458472.0 438899.0 502501.0 382847.0 444315.0 439032.0 False True 413429.0950569448 520017.9378636737 557293.6657515011 600833.750917879 516855.69162355457 408558.9451871154 478193.1068897652 411416.9871976746 334819.5217659707 411012.601885794 1.005879365158303 1.2652116637731912 1.3559040846790227 1.4618377834673537 1.2575178698953144 0.9940302154059977 1.1634512048918595 1.0009838757011955 0.8146210608379479 1.0 18.648823102892244 2.2559513525093178 1.118586050552824 0.938932597774693 1.2792830757283318 0.5009799717452095 0.13471509560117578 0.4340422618341075 1.046370657024147 0.09557315974344825 0.054844820386078436 180.28157871621562 -2.2559513525093178 0.3403504779536388 VCIESEHSMDTLLATLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VCIESEHSMDTLLATLK 17 0 O00244;E5RGN3;E5RIM7 O00244 ATOX1 Copper transport protein ATOX1 0 ; 184.99 6.0451e-10 333430000.0 484970.0 497700.0 455220.0 445090.0 469580.0 548750.0 566610.0 495490.0 646890.0 589700.0 False True 482358.9754052328 514265.64363399707 519311.0191568292 501438.348363894 529378.2295812811 510816.20411855465 539200.9096396032 532465.9798472392 487472.6273818999 552064.8411324299 0.8737360894343279 0.9315312356771412 0.9406703351939348 0.9082961112598881 0.9589058931834662 0.9252829850036031 0.9766985134093318 0.9644989866679641 0.8829988636515335 1.0 19.074478198843163 7.999999999999999 0.08063988130872655 1.0283073410232897 0.6978671272934328 0.3258006048515728 0.03147982734566217 228.0653312465976 1.338312911860658 0.8188729988517615 8.393711674859697 99999999.99999979 -7.999999999999999 -0.3304402137298569 VCSTLLGLEEHLNALDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VCSTLLGLEEHLNALDR 17 0 H0YCY6;Q3LXA3-2;Q3LXA3;I3L252 H0YCY6 TKFC;DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) 0 ;;; 274.47 1.0847999999999999e-35 1897620000.0 1450514.0 1978334.0 1764515.0 1683318.0 1682324.0 2024260.0 1984398.0 1603000.0 2049218.0 2002155.0 False True 1442704.5937912555 2044181.6512618447 2012943.3745606754 1896425.886205516 1896557.9894844305 1884327.6707954877 1888405.0876034827 1722623.999869068 1544215.6820143803 1874375.7537688676 0.7696987068309878 1.0905933066790598 1.073927343817367 1.0117639872327155 1.011834465779319 1.005309456765331 1.0074848033039299 0.919038776726242 0.8238559845374527 1.0 20.837978766589387 1.6687009676946973 4.426816877450695 0.90019805482169 1.0041232402117248 0.1362013643529879 0.09127490567890531 0.26237201234302043 11.907171719680118 0.04831486991707671 0.022843302118677244 46.63381738402675 -1.6687009676946973 0.10392518539003481 VCTIS(ph)PAPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VCTISPAPR 9 0 O43439-2;O43439-5;O43439;O43439-4 O43439-2 CBFA2T2 Protein CBFA2T2 1 VCT(0.004)IS(0.996)PAPR 76.815 0.023866 0.0 421280.0 294290.0 258950.0 246760.0 222170.0 432730.0 401760.0 296370.0 532590.0 369300.0 True False 419011.8752886078 304085.26474793826 295407.90916625125 277999.79069912754 250462.03259524063 402816.39363685134 382325.333927758 318486.6343363666 401340.3308403688 345730.9578263628 1.2119593741994288 0.8795430604761164 0.8544444819853667 0.8040928485170482 0.7244420174864141 1.1651151987354245 1.1058463966648138 0.9211979058477049 1.1608458014972869 1.0 18.39929026722686 2.7270692122210263 24.828642245639212 1.0567100085089693 0.8867514240452921 0.2890741312672962 0.13660988760381879 959.4956572788494 2073109.1017529145 0.04519128718515603 0.04294342831724563 533.4198982581901 -2.7270692122210263 -0.1699585844636773 VCTLAIIDPGDSDIIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VCTLAIIDPGDSDIIR 16 0 E5RI99;P62888;A0A0C4DH44;A0A0B4J213 E5RI99 RPL30 60S ribosomal protein L30 0 ; 141.13 3.8016e-06 225870000.0 645810.0 785990.0 747610.0 789220.0 780290.0 786680.0 750200.0 717670.0 939380.0 820920.0 False True 642333.0307162355 812151.2020090111 852866.9896573895 889135.1710794511 879655.306358827 732298.663245529 713909.9599576953 771226.1796544183 707882.3860471013 768528.1827750282 0.8357963248619942 1.0567617690693754 1.1097406819588942 1.1569324209672196 1.1445973304225971 0.9528585673999874 0.9289313989499832 1.00351060239541 0.9210883893562044 1.0 19.551738640539266 2.712227560753901 24.237210696767296 0.9622966748088929 1.0686066970625236 0.24416976045819405 0.08696525908797195 742.9585438793141 683825.2660465579 0.02925459811592936 0.02759035222242886 515.4986837974495 -2.712227560753901 0.10631002225363073 VCYYYDGDIGNYYYGQGHPMKPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VCYYYDGDIGNYYYGQGHPMKPHR 24 1 Q92769;H3BM24 Q92769 HDAC2 Histone deacetylase 2 0 ; 201.67 8.9941e-25 1125410000.0 603890.0 599650.0 619120.0 614940.0 637350.0 613820.0 605180.0 370673.0 723540.0 608600.0 False True 600638.7233384864 619608.9877539196 706286.7145124908 692791.3409487818 718512.7446305832 571388.0681768585 575905.131387894 398334.5014993552 545233.2619392783 569758.6269513258 1.054198558699136 1.0874938236026963 1.239624432352524 1.2159383082197133 1.2610826947460427 1.00285987986571 1.010787909380955 0.6991285127717508 0.9569548158607476 1.0 19.119991338535844 2.3093861954416295 2.1733250583143784 0.8602704886164556 1.170038917433477 0.5619963994229421 0.10410162952457888 0.19749029721885794 1.9109726643411187 0.046353239221923394 0.03331638089943936 203.88543186743462 -2.3093861954416295 0.3097684288170215 VDASGELEDVEWEDWE ddPTM_BT-474_Trastuzumab_2h_R1 1 VDASGELEDVEWEDWE 16 0 Q9NW68-9;Q9NW68-8;Q9NW68;Q9NW68-7 Q9NW68-9 BSDC1 BSD domain-containing protein 1 0 203.49 6.4347e-11 13468000.0 82694.0 85446.0 76180.0 77925.0 75748.0 92708.0 88537.0 85129.0 94221.0 92237.0 False True 82248.78469216712 88290.0184568022 86905.48183156973 87790.29701016977 85394.05880642885 86299.31417115797 84254.12706581525 91481.75825630309 71001.4970467158 86350.3556919313 0.9525008210227044 1.0224627072966666 1.0064287649447436 1.0166755690431166 0.9889253856820903 0.9994089020205611 0.9757241460174794 1.0594253784278422 0.8222490397147291 1.0 16.397914500024303 1.2518615404451776 24.997061201078793 0.9111244519391722 1.0047275151579171 0.366859569057121 0.048058917790492844 184.73986868942663 347194.2672919029 0.02935999270646653 0.010585622146154045 17.859181067644478 -1.2518615404451776 0.0936030632187449 VDATEESDLAQQYGVR ddPTM_BT-474_Trastuzumab_2h_R1 4 VDATEESDLAQQYGVR 16 0 P07237;H7BZ94;I3L3U6;I3NI03 P07237 P4HB Protein disulfide-isomerase 0 ;;; 430.33 6.394999999999996e-160 623330000.0 518409.0 579946.0 535578.0 523552.0 510189.0 573562.0 600033.0 523475.0 664149.0 523850.0 False True 515617.94354465406 599249.1520252397 610982.7270725723 589833.6295190036 575158.5450228807 533913.0089597192 571007.1114413439 562539.3626521893 500478.3780906514 490417.4445094513 1.0513858128770481 1.2219164687843622 1.2458421573557985 1.2027174728847483 1.1727938136421578 1.088690899838963 1.1643287118640404 1.1470623016171035 1.0205150401843144 1.0 18.90365077210267 1.2394596383641598 3.113911308875418 0.99799933794369 1.1677746398897475 0.5518202925238574 0.054882469176235286 0.1814361005923151 3.0434060185580205 0.050590379042154555 0.014453327963929043 17.356399517658716 -1.2394596383641598 0.1697753019460575 VDAVHLLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDAVHLLK 8 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 ; 96.711 0.008747399999999999 1056260000.0 2852000.0 2956400.0 2654500.0 2505600.0 2494200.0 2967200.0 3023200.0 2780000.0 3726200.0 2991400.0 False True 2836645.148886986 3054801.986818459 3028230.52667238 2822808.703095046 2811821.5857183705 2762084.448037492 2876956.266254477 2987457.716553962 2807927.938521904 2800486.2909336095 1.012911635407907 1.090811262568283 1.0813231032324913 1.0079709057079493 1.0040476165948244 0.9862874376423691 1.0273059630994925 1.0667639139051173 1.0026572697793188 1.0 21.41724593528111 3.733895646401002 24.875542259029988 1.0185885802490138 1.064594927098073 0.3679513805893504 0.028287855147022124 422.95660806322906 2255386.1401244216 0.008100505519386632 0.012985592210109979 5418.706724244203 -3.733895646401002 0.04600634684905924 VDAYHLQLQNLLYEVMHLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDAYHLQLQNLLYEVMHLQK 20 0 Q13769;F8WCP5;C9JXG5;C9JCL9;H7C441 Q13769 THOC5 THO complex subunit 5 homolog 0 ; 241.68 5.4337e-30 106557000.0 159130.0 173325.0 145739.0 145774.0 152116.0 182848.0 164115.0 142821.0 193649.0 172953.0 False True 158273.2617610049 179094.0178478251 166257.7844139033 164228.97345345488 171487.0709378297 170208.14813789405 156176.13046981773 153479.02825034308 145926.79871365704 161914.9914674872 0.9775083846561942 1.1060990475597035 1.0268214382563097 1.0142913387141939 1.059117932092561 1.0512192020963798 0.9645563332607046 0.9478988131939711 0.9012556366218837 1.0 17.304877043242893 2.159647155298999 4.442983513720844 0.9468741331783038 1.0414959040902578 0.5472124906633156 0.03823573905998413 0.14640821579099422 5.3931293575271875 0.014087352994249942 0.01027786850677072 144.4265892977158 -2.159647155298999 0.094621770911954 VDCDQHSDIAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDCDQHSDIAQR 12 0 Q9BS26 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 0 ; 194.86 9.813e-07 2855000000.0 2885500.0 3545200.0 3127300.0 3179400.0 3129600.0 3244300.0 3343200.0 3121200.0 3663600.0 3060200.0 False True 2869964.7886091876 3663199.8388813413 3567596.6570211146 3581911.714008776 3528136.009407502 3020029.177260728 3181476.643735761 3354119.7931324574 2760754.869724884 2864895.416030967 1.0017694791055387 1.2786504590650458 1.2452798929615627 1.2502766048511345 1.2315060402084033 1.0541498863664223 1.1105035897412918 1.1707651784996964 0.9636494422367573 1.0 21.450051043200784 2.7407475584522727 24.949367692541337 1.082770699350247 1.2109252468137186 0.36526386752035367 0.09047504545336386 229.52054704585527 2618463.4794990756 0.02796035422075908 0.028322872059185725 550.4876224710583 -2.7407475584522727 0.12815454746347155 VDCGYPHVTPK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDCGYPHVTPK 11 0 X6R3S7;Q07654 X6R3S7 TFF3 Trefoil factor 3 0 ;;; 158.41 2.9873000000000007e-05 1819440000.0 4200320.0 4092480.0 3781310.0 3363300.0 3267570.0 5155790.0 4855960.0 3667200.0 4874320.0 4241520.0 False True 4177705.943819424 4228695.722843595 4313685.580264284 3789093.4351530788 3683675.6710952455 4799382.372724194 4621058.663231368 3940865.085664284 3673109.1485417034 3970822.5622520316 1.0521008879958764 1.0649420004416696 1.0863455902743233 0.9542338837231029 0.9276857913807329 1.20866200830748 1.163753502148572 0.9924555992824928 0.925024750151142 1.0 21.921006464238822 1.5325633913899577 7.614771284137851 0.9615173157254774 1.0631133073536891 0.2230995469374537 0.08062308359668308 0.19178898179101736 20.457977424627302 0.04739040561541326 0.0219273510788194 34.08500730333126 -1.5325633913899577 0.10159599162821176 VDCTAHSDVCSAQGVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDCTAHSDVCSAQGVR 16 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ; 242.01 6.267e-20 2544400000.0 1521540.0 1464810.0 1318380.0 1182300.0 1289900.0 1702470.0 1655350.0 1615180.0 2443830.0 1672070.0 False True 1513348.197698986 1513565.3153536571 1503996.4444356125 1331979.05877605 1454161.119163709 1584782.2560833062 1575274.3964489086 1735712.9333178543 1841580.8421442737 1565357.0610688499 0.9667750798438591 0.9669137815241792 0.9608008816906353 0.8509106911790172 0.9289644869719279 1.0124094339225023 1.0063355100422182 1.1088287627697433 1.1764605583896712 1.0 20.578060345637173 2.14206202282783 1.6129732868756417 1.1045920143724572 0.936344555459249 0.5999110459572076 0.054462764810912126 0.24626041891991732 1.2354748839467866 0.03205751376132036 0.017779837347322146 138.69538895509808 -2.14206202282783 -0.16824745891320825 VDCTANTNTCNK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDCTANTNTCNK 12 0 H7BZJ3;P30101 H7BZJ3;P30101 PDIA3 Protein disulfide-isomerase A3 0 164.9 0.00013039 97628000.0 39561.0 46540.0 48578.0 39443.0 47096.0 50814.0 56090.0 57430.0 75958.0 51913.0 False True 39348.0079716403 48089.05576597589 55417.36015245471 44436.47975581811 53093.39644013798 47301.34778328967 53376.71241539211 61715.718223631004 57239.16868505368 48599.86789504465 0.80963199440409 0.9894894337949252 1.1402779997701433 0.9143333445222996 1.0924596864089726 0.9732814065552763 1.0982892490708709 1.2698741971256198 1.1777638739402811 1.0 15.568664771828592 2.0423383304330436 4.70607393505614 1.1808854732256668 0.9963855332627523 0.31512149331272243 0.10632403113570416 0.1979859526968914 9.968820262247476 0.041427876153813305 0.028861225887094853 110.2397781135747 -2.0423383304330436 -0.18449993996291458 VDCTQHYELCSGNQVR ddPTM_BT-474_Trastuzumab_2h_R1 5 VDCTQHYELCSGNQVR 16 0 Q8NBS9;Q8NBS9-2 Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 0 ;;;; 262.82 6.603000000000001e-27 5480230000.0 2440450.0 3025270.0 2666050.0 2789230.0 2798610.0 2968900.0 3064500.0 2796370.0 3156040.0 2871110.0 False True 2427310.888359482 3125964.283135667 3041406.666277979 3142346.2320138025 3154996.3948389417 2763666.9310388616 2916258.4274731507 3005049.32907914 2378276.2307693283 2687873.301719064 0.9030600091183851 1.1629879582257157 1.1315290286684303 1.1690827205300467 1.1737891041296937 1.028198363840782 1.0849687095027953 1.118002596014188 0.8848170891270326 1.0 21.358033704728964 1.2479670124579059 24.9303271921597 0.9424085381346766 1.1026531285070038 0.3615210728553957 0.08155376771002511 164.5969239632894 436249.26682610536 0.053942432684446054 0.019121267058442835 17.699745119252825 -1.2479670124579059 0.1602445903723272 VDDDALLVFWDAR ddPTM_BT-474_Trastuzumab_2h_R1 3 VDDDALLVFWDAR 13 0 G3V4B8;Q96FK6 G3V4B8 WDR89 WD repeat-containing protein 89 0 ;; 142.07 9.3417e-05 63780500.0 78597.3 72669.6 68880.4 58819.5 64023.5 70427.4 78427.9 67565.0 88459.8 68696.5 False True 78174.14086978101 75088.36370629919 78578.16160083046 66266.04266910077 72176.51322798485 65558.91960626713 74634.04285332732 72607.04338811827 66660.06759059093 64312.23055596741 1.2155408107288448 1.1675596236854808 1.2218229864138856 1.0303801018288903 1.122282847353173 1.0193849449711558 1.160495324266158 1.128977221913215 1.036506851252505 1.0 15.972805507219668 7.999999999999999 0.22965444623555514 1.0482615684406111 2.0084727360216523 0.4686845507037406 0.05742616680740964 51.132768624730865 0.6696271389457669 0.08520534785962307 18.460647634263808 99999999.99999979 -7.999999999999999 0.9602111675810412 VDDDSLGEFPVTNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDDSLGEFPVTNSR 15 0 Q92785;J3KMZ8;Q92785-2 Q92785 DPF2 Zinc finger protein ubi-d4 0 123.84 0.00023333 104120000.0 60069.0 73370.0 79346.0 62101.0 64677.0 64691.0 65004.0 60366.0 80364.0 71352.0 False True 59745.59517829329 75812.07609689832 90517.22711220448 69962.98023264106 72913.23257938695 60219.06343623401 61859.5081806053 64870.81745233688 60559.369022428844 66798.25427247942 0.8944185118159323 1.134940978961071 1.3550837233406139 1.047377375271699 1.0915439837987932 0.9015065452248503 0.9260647430735497 0.9711454013112341 0.9066010733663594 1.0 16.027522778875323 2.868534004014937 3.5095360883239453 0.9408150635616209 1.123298751636741 0.3530595871647533 0.1095655236173594 0.2720442921778388 6.133901944741936 0.035539469815887154 0.03816135415020902 738.8121076025417 -2.868534004014937 0.18248368807512005 VDDFLANEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDFLANEAK 10 0 P52209-2;P52209;K7EM49;K7EPF6;K7EMN2 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 128.81 0.00074382 136200000.0 174820.0 185200.0 159230.0 169890.0 155810.0 178770.0 168220.0 171520.0 228670.0 190090.0 False True 173878.78854432804 191364.2700442361 181648.19994802913 191398.05658078592 175651.47994177643 166412.05067931465 160082.5559371949 184319.69336091235 172317.34252101462 177958.29345576317 0.977076061855756 1.0753321260175233 1.0207346700207776 1.0755219825052076 0.9870373362814914 0.9351182653405322 0.8995509724697838 1.035746577367188 0.9683018373282458 1.0 17.441179643298526 3.0688598222396424 6.934526810344667 0.9688671117080251 1.0383782503040986 0.37249970260262744 0.042672338390159 0.2369997757818406 19.457037724352254 0.012565110050463613 0.015042044918135619 1171.8170756721365 -3.0688598222396424 0.0695111385960735 VDDFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VDDFLR 6 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 ;;; 150.06 0.024567 613470000.0 1021990.0 1115130.0 1023950.0 986230.0 953390.0 1079620.0 1131660.0 940120.0 1311300.0 1020780.0 False True 1016487.7193937643 1152246.4279396785 1168113.2596670515 1111086.616879559 1074798.5653147432 1004988.4105521154 1076917.2824389846 1010276.5282326305 988147.6855197711 955632.9464662739 1.0636800700023146 1.205741631450066 1.2223451106269247 1.1626708988928431 1.1246981064111679 1.0516468841602287 1.126915188955335 1.057180512631358 1.0340242968534412 1.0 19.866097067540544 2.065897408520217 0.5843868977894031 1.006061553802977 1.1726068241517609 0.5661639281353106 0.04704527700381758 0.5894742072084826 0.40880138702514407 0.044333062615525644 0.030254283799264002 116.38510655047662 -2.065897408520217 0.16654527034878397 VDDHDSEEICLDHLCK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDHDSEEICLDHLCK 16 0 C9J6P4;Q7Z2W4;Q7Z2W4-2;H7C5K1 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 0 186.85 8.2929e-10 161720000.0 76674.0 96274.0 99922.0 100590.0 95003.0 148730.0 121580.0 82506.0 167820.0 114210.0 False True 76261.19570328217 99478.42189113803 113990.14906240648 113324.68368627483 107101.06892310249 138448.64517276097 115698.71091929711 88663.01667697902 126463.00967278906 106921.02001989954 0.7132479253292651 0.9303916280692389 1.0661154283899579 1.0598915317603916 1.0016839429998838 1.2948683537343142 1.0820950912904115 0.8292384103750372 1.1827703256969722 1.0 16.706185980417303 4.655074684819162 2.161875340356381 1.053888761952908 0.655586635721762 0.4676455319784065 0.1150671556259579 0.5196881165663781 3.1637453670504874 0.031110053228029184 0.37289711631809225 45193.36558880806 -4.655074684819162 -0.398302126231146 VDDHLMGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDDHLMGK 8 0 O95232;J3KPP4;H0YA81 O95232 LUC7L3 Luc7-like protein 3 0 ;; 113.71 0.0027969 1676740000.0 2163180.0 2164189.0 1908152.0 1921891.0 1864533.0 2432459.0 2528083.0 2240968.0 3200110.0 2426366.0 False True 2151533.6792318923 2236222.7225851226 2176803.215645491 2165202.2035440784 2101970.2255970743 2264308.8347225757 2405789.9670750867 2408200.411564927 2411485.769777074 2271513.244563559 0.9471807766832021 0.9844638713584886 0.9583053151264961 0.9531981416908238 0.9253612016693038 0.996828365470364 1.0591133346164252 1.0601744970356228 1.0616208272386318 1.0 21.1152222866979 2.42418807983429 3.818569836859142 1.0512395175544802 0.9557351696369939 0.792575576302062 0.02192011374862255 0.09011174312187059 2.73582054884241 0.00770372234983037 0.006459900734884298 265.57554405065525 -2.42418807983429 -0.0955043479174863 VDDIFSDLYYVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDDIFSDLYYVR 12 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 0 ; 120.06 0.0010473 58828000.0 112274.0 117585.0 108729.0 98329.0 106317.0 107032.0 108337.0 114827.0 136561.0 116982.0 False True 111669.52925881412 121498.74564336656 124037.09811059006 110777.44131810051 119855.83975977053 99633.12976622708 103096.32542246993 123395.97381969147 102907.3713736488 109516.10860667106 1.0196630493864343 1.109414379210015 1.1325922705678977 1.0115173258754067 1.0944128793895955 0.9097577610619926 0.9413804666192269 1.1267381154207203 0.9396551126852247 1.0 16.740783564333736 2.793412904531824 24.999021461165253 0.9989724547435036 1.075351344101885 0.3064625659119993 0.06564747515373771 468.725321456954 213621.35612917162 0.021122158934988512 0.022403415036179916 621.459604808103 -2.793412904531824 0.07637888935838133 VDDKPS(ph)SPGDSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDKPSSPGDSSK 13 1 Q9HC52;C9JM54;C9J6K3 Q9HC52 CBX8 Chromobox protein homolog 8 1 VDDKPS(0.656)S(0.343)PGDSSK 180.88 7.5863e-06 1511000000.0 1885900.0 1229700.0 1059200.0 952900.0 922370.0 1583400.0 1613000.0 1535400.0 2684300.0 1402400.0 True False 1875746.5239431874 1270629.8211306515 1208326.1532685568 1073537.0422969619 1039828.3521846874 1473943.284922678 1534973.0277416222 1649979.3446032212 2022790.2327771843 1312897.6313449552 1.4287073715120044 0.9678057076156016 0.9203506232475464 0.817685260957636 0.7920102278800436 1.1226642883137392 1.169149057089218 1.2567463793143976 1.540706742463236 1.0 20.324323000780787 2.236243368627017 2.1548860870004054 1.280688457671947 0.9732418756413848 0.2502766539689456 0.20607223579788303 0.39888198327670543 3.7582768911747566 0.09672304679173038 0.06475693656620009 172.28337408885122 -2.236243368627017 -0.3074465820305623 VDDKPSS(ph)PGDSSK ddPTM_BT-474_Trastuzumab_2h_R1 5 VDDKPSSPGDSSK 13 1 Q9HC52;C9JM54;C9J6K3 Q9HC52 CBX8 Chromobox protein homolog 8 1 VDDKPS(0.03)S(0.969)PGDSSK;VDDKPS(0.25)S(0.75)PGDSSK;VDDKPS(0.008)S(0.992)PGDSSK;VDDKPS(0.15)S(0.85)PGDSSK;VDDKPS(0.091)S(0.909)PGDSSK 188.41 1.1483e-06 3614260000.0 7619800.0 4839740.0 4399670.0 3977420.0 3948010.0 6695120.0 6741280.0 6180760.0 11934200.0 5966660.0 True False 7578775.8434393685 5000827.820215389 5019105.293382812 4480960.964185944 4450765.671811394 6232302.113017253 6415178.532209561 6641999.696463332 8993176.320086975 5585862.650485366 1.3567780516015435 0.8952650885142796 0.8985371834996145 0.8021967679059536 0.7967911046693315 1.1157277761700275 1.1484669304663506 1.1890732214631514 1.609988802589971 1.0 22.413348669275766 2.1740789859930785 1.6909150368275887 1.2829008264454407 0.9408689142523141 0.2983643185681951 0.20623169618373352 0.43227119694361105 2.415440868345209 0.11375300456997428 0.06604231264172795 149.30659317297824 -2.1740789859930785 -0.34203191219312656 VDDKWEK ddPTM_BT-474_Trastuzumab_2h_R1 6 VDDKWEK 7 1 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 ;;;;; 126.41 0.0036066 5986360000.0 10759500.0 8991160.0 7655280.0 7480250.0 8085550.0 11747200.0 11686900.0 10125110.0 16628600.0 11459970.0 False True 10701572.047492843 9290425.325329013 8733076.883113412 8427248.883032694 9115196.865690468 10935143.713934364 11121559.998706475 10880697.122466797 12530704.341824206 10728584.903226066 0.9974821604175309 0.8659506737496572 0.8140008176183041 0.7854949146647137 0.8496178152022216 1.0192531272830012 1.0366287911243768 1.014178218340332 1.1679736381688368 1.0 23.354956461859345 2.685018184552935 4.179652469554319 1.0478702479014133 0.8551248736644319 0.6557121766879382 0.0671909088461781 0.14122699931513355 5.202092741192011 0.022787489997250433 0.021839069128757275 484.19264102238907 -2.685018184552935 -0.19274537423698135 VDDLLESYMGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDLLESYMGIR 12 0 O14908;O14908-2;K7EM11;A0A2R8Y651;Q8TF64 O14908 GIPC1;GIPC3 PDZ domain-containing protein GIPC1;PDZ domain-containing protein GIPC3 0 93.058 0.017184 12771000.0 11176.0 14817.0 14053.0 13622.0 11924.0 13721.0 18381.0 12403.0 17160.0 16071.0 False True 11115.829657770335 15310.174887934358 16031.540249134296 15346.543803304878 13442.450720914849 12772.499565759783 17491.840807761153 13328.574841157852 12931.147932219397 15045.335020924675 0.7388223420954547 1.0176027896116204 1.0655489044835513 1.020020078114664 0.8934630370290476 0.8489342077126306 1.162608927181345 0.8858941873092758 0.859478895899299 1.0 13.877028611687319 VDDLLIIEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDLLIIEEK 10 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 159.83 1.76e-05 19654000.0 56649.0 41775.0 40836.0 40183.0 40444.0 56865.0 53671.0 50706.0 76471.0 53769.0 False True 56344.00807829557 43165.45562147924 46585.35384712506 45270.16367994419 45594.303669630994 52934.05639581158 51074.72868686949 54489.939199850814 57625.74670890151 50337.4163860431 1.1193265789842544 0.8575222711161551 0.9254617577083601 0.8993342712061819 0.9057736161896618 1.0515846898031986 1.0146474005573083 1.0824937613397074 1.144789519330182 1.0 15.619343550305457 2.695358381545882 6.893985216398713 1.0621147455149746 0.9336224636453694 0.3787504067382096 0.07467135610188207 0.22905172694416376 29.94315281378547 0.023444460937568492 0.02226288356189851 495.8592070242967 -2.695358381545882 -0.12849228186960526 VDDQIYSEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 VDDQIYSEFR 10 0 Q9BVG4;A6NDF3 Q9BVG4;A6NDF3 PBDC1 Protein PBDC1 0 ;;;; 217.5 1.6796e-08 1806350000.0 1675760.0 1754500.0 1583300.0 1574260.0 1475970.0 1703120.0 1727830.0 1523740.0 1981760.0 1616050.0 False True 1666737.8943544375 1812897.471882354 1806214.877709694 1773561.154587486 1663926.0307404124 1585387.3231132417 1644248.261948421 1637449.2161949424 1493381.8022234912 1512912.3054299874 1.1016751522030426 1.1982832483916557 1.1938662083896174 1.1722828535547003 1.0998165754673435 1.0479043084143969 1.0868100259658515 1.0823160141655137 0.9870907896403517 1.0 20.52889693481147 2.408193832887937 0.5664917470554437 1.0056213629451987 1.1791196272903814 0.7093197858600288 0.037954438851820954 0.5088480148140172 0.33422230185176743 0.03574209929480851 0.03152214895277098 255.9728081433464 -2.408193832887937 0.17349826434518278 VDDQIYSEFRK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDDQIYSEFRK 11 1 Q9BVG4;A6NDF3 Q9BVG4;A6NDF3 PBDC1 Protein PBDC1 0 ;;; 196.15 9.8547e-08 1405460000.0 2040850.0 2550890.0 2255440.0 2446660.0 2277200.0 2862440.0 2970140.0 2601710.0 4047780.0 3188090.0 False True 2029862.2903597518 2635794.8316044346 2572986.3473640843 2756406.9051382956 2567187.9219781375 2664566.260258976 2826462.9811633597 2795862.81141569 3050258.8564731376 2984623.3667388335 0.6801066804545235 0.8831247724514237 0.8620807489607887 0.9235359261259487 0.8601379827643683 0.8927646583328972 0.9470082599573397 0.9367556531833382 1.0219912135198557 1.0 21.509117456854206 6.802049687991284 0.28669229150997155 0.9849174733480723 1.993557258456515e-30 0.7449471516045865 0.04537047009213753 14.380754414823338 0.37596358741245606 0.049304607621707484 6.24149786982775 6339422.369642395 -6.802049687991284 -0.9849174733480723 VDDS(ph)SEDKTEFTVK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDDSSEDKTEFTVK 14 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 1 VDDS(0.705)S(0.295)EDKTEFTVK;VDDS(0.717)S(0.283)EDKTEFTVK;VDDS(0.576)S(0.424)EDKTEFTVK 170.61 1.9058e-06 1090100000.0 2204870.0 1412210.0 1238070.0 1091780.0 1181320.0 1929220.0 1662210.0 1909760.0 3546080.0 1724620.0 True False 2192999.224904089 1459214.5561510292 1412379.4945026475 1229999.2360572752 1331754.099767789 1795857.5622953956 1581802.5520411646 2052275.9887647822 2672196.0990375583 1614553.2750785337 1.3582699677701369 0.9037884216487383 0.8747803595604163 0.7618201610581395 0.8248437015514468 1.112293778109021 0.9797153035809388 1.2711107279287253 1.6550683958741341 1.0 20.622703615369613 1.6761762081732006 3.6202991210136535 1.365477257052962 0.9564294243884838 0.33075332956230197 0.21664779030187487 0.18939190994907407 5.811324284536559 0.12269007067428458 0.05620090869659092 47.44344405464874 -1.6761762081732006 -0.4090478326644783 VDDSPSTSGGSS(ph)DGDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDDSPSTSGGSSDGDQR 17 0 C9J180;Q96LR5;F8WF15;F8W8F0 C9J180 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 VDDSPSTSGGS(0.03)S(0.97)DGDQR 168.05 2.2512e-09 190310000.0 139250.0 126400.0 126150.0 144190.0 134340.0 159650.0 146470.0 127230.0 151690.0 163820.0 True False 138500.29347212942 130607.14758958644 143910.8234845438 162444.43921586603 151447.40270443648 148613.77127567583 139384.68653026357 136724.54866084937 114308.03204186252 153364.8673466416 0.9030770597485364 0.8516106058004977 0.9383558697264779 1.059202423777425 0.9874973670607937 0.9690209618854417 0.9088436546241099 0.8914984965351869 0.7453338826518774 1.0 17.22660850414961 -0.5661487034153907 6.088509620319943 0.9999997406490747 0.9211394421336584 0.08721052176559518 0.07946803253659544 0.0 0.0 0.08059780735860009 0.018997085377344385 0.2715509313092318 0.5661487034153907 -0.07886029851541632 VDDSSEDKTEFTVK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDDSSEDKTEFTVK 14 1 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;; 180.27 1.6153e-06 15072400000.0 12796700.0 8656300.0 7637300.0 6589900.0 7184700.0 11433800.0 11006700.0 10491800.0 17746900.0 9948500.0 False True 12727803.989047023 8944419.712656148 8712565.45539837 7424180.664322332 8099628.957946747 10643408.31827011 10474263.871322814 11274751.39228089 13373414.291276481 9313578.212660637 1.3665858275335225 0.960363407964657 0.9354691887973554 0.797135160601335 0.8696581241929467 1.142784016544977 1.1246229571663844 1.2105713974629304 1.43590508244157 1.0 23.15090411711678 VDDYEHAAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDDYEHAAK 9 0 O43148;O43148-2;K7EP06;K7ERH6 O43148 RNMT mRNA cap guanine-N7 methyltransferase 0 ;;; 142.43 0.00010435 2597750000.0 5271400.0 4761980.0 4149120.0 3736630.0 3905250.0 5248800.0 5026400.0 4690300.0 6525100.0 4828700.0 False True 5243019.368107602 4920479.625622296 4733280.031202455 4209686.974874699 4402560.439269766 4885962.810346188 4783253.829287339 5040314.00286081 4917076.536860411 4520528.231941945 1.1598244937528654 1.088474481998432 1.0470634820411497 0.9312378463050293 0.9739039805484189 1.08083891077642 1.0581183401287002 1.11498341438199 1.0877216742318885 1.0 22.108059933353193 VDEFPLCGHMVSDEYEQLSSEALEAAR ddPTM_BT-474_Trastuzumab_2h_R1 12 VDEFPLCGHMVSDEYEQLSSEALEAAR 27 0 P27635;X1WI28;A6QRI9;B8A6G2 P27635 RPL10 60S ribosomal protein L10 0 ;;;;;;;;;;; 306.39 1.3720999999999993e-71 5256983000.0 2046292.0 2298595.0 2114424.0 2067827.0 2062542.0 2226469.0 2177881.0 2082036.0 2775203.0 2376451.0 False True 2035274.991236413 2375102.3450449775 2412116.520297128 2329613.6861809213 2325194.498055783 2072558.4385742734 2072528.5757166466 2237408.0986845894 2091291.4064649811 2224783.8625979386 0.9148191990478431 1.0675654318489654 1.0842026323763585 1.047119104621952 1.0451327597012467 0.9315774324945401 0.9315640096815969 1.0056743651816626 0.9399975618408726 1.0 21.085233754614777 2.750454841076147 24.498973820621295 0.9632206686567433 1.0375224800138627 0.33486475052602616 0.04897500466769143 649.1773321426997 1337133.9555034644 0.015008034066663224 0.015798134715096692 562.9305795542153 -2.750454841076147 0.07430181135711944 VDEFVTHNLSFDEINK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDEFVTHNLSFDEINK 16 0 P11766 P11766 ADH5 Alcohol dehydrogenase class-3 0 ;;; 345.3 4.6353e-87 2992740000.0 2553370.0 2283300.0 2024250.0 1892300.0 2002050.0 2549850.0 2629110.0 2456560.0 3540280.0 2671130.0 False True 2539622.939626074 2359298.260216005 2309246.8049035887 2131864.9859781107 2256999.200419955 2373584.8712012684 2501929.905124469 2639880.981358925 2667825.4313215422 2500656.196530552 1.0155826071371126 0.9434716629536403 0.9234563344243293 0.852522225540597 0.9025627767429003 0.9491848077694229 1.0005093497441528 1.0556753003557768 1.066850147182537 1.0 21.25387529111517 2.1482479870698534 2.390055992763815 1.0453448214184544 0.9243753995742717 0.5929000087284404 0.04148331122976987 0.20245465062598836 2.306159438545918 0.020881919781327418 0.013274322486402012 140.6850622464435 -2.1482479870698534 -0.12096942184418269 VDEHLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDEHLAK 7 0 P12429;D6RA82;D6RFJ9 P12429 ANXA3 Annexin A3;Annexin 0 ; 102.72 0.0085375 1097620000.0 2476370.0 2149120.0 1804400.0 1695260.0 1720530.0 2289660.0 2196400.0 2088110.0 3070800.0 2291120.0 False True 2463037.499070571 2220652.160029527 2058443.8358740413 1909879.7421810785 1939629.2971197246 2131381.1934798905 2090151.7409371966 2243935.3714077324 2314042.4866118464 2144898.7600734816 1.1483234290210462 1.0353179373153492 0.9596927716082607 0.8904288527425175 0.9042987637576309 0.9936978067006165 0.9744757094575367 1.0461730936572773 1.0788586061435226 1.0 21.03247812297586 1.7061319413099854 5.559933940282635 1.0471693343272521 0.9808278536698155 0.1094691480436305 0.069972738424923 0.3088051415928078 22.71381008947949 0.039019110944471434 0.019613654247020405 50.83138479491527 -1.7061319413099854 -0.06634148065743661 VDENENCSSLGS(ph)PSEPPQTLDLVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDENENCSSLGSPSEPPQTLDLVR 24 0 Q96P16;A0A0C4DGQ6;Q96P16-3 Q96P16 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A 1 VDENENCSSLGS(0.913)PS(0.086)EPPQTLDLVR;VDENENCSSLGS(0.998)PS(0.002)EPPQTLDLVR 147.54 1.1349e-07 156890000.0 69495.0 63343.0 54418.0 67333.0 52371.0 66898.0 63889.0 64046.0 70136.0 67568.0 True False 69120.84664162033 65451.33346334789 62079.58139026471 75857.35089619193 59040.136422763426 62273.49872095312 60798.444990318916 68825.43773899828 52851.92257425058 63255.75239212484 1.0927203302102477 1.0347095874792944 0.9814061020953636 1.199216640819467 0.933356006213812 0.9844717099389997 0.9611528231207657 1.0880502584547054 0.835527530312492 1.0 15.948909062047825 VDENHSEFTLYESR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDENHSEFTLYESR 14 0 O14497;H0Y488;A0A1B0GTU5;O14497-3;O14497-2 O14497 ARID1A AT-rich interactive domain-containing protein 1A 0 111.64 0.00063966 158550000.0 144580.0 220690.0 222990.0 255200.0 251790.0 258490.0 208370.0 171710.0 209450.0 217260.0 False True 143801.5973443482 228035.53324007755 254385.0537361745 287508.2938337542 283853.96402374626 240621.19472000928 198290.3470493003 184523.87212571246 157833.85398620923 203394.28079435616 0.7070090505137667 1.121150173689668 1.2506991481897816 1.413551515366562 1.3955847869229896 1.1830283220367035 0.9749062081533342 0.9072225207368401 0.7759994694530705 1.0 17.63391958733122 2.1430628436323595 3.1581557604100556 0.8933240822874249 1.2012490360835768 0.3186264524217668 0.19014660857429402 0.30317629296122517 6.023012993974224 0.08607741776197828 0.0591181728344667 139.0153775819075 -2.1430628436323595 0.3079249537961519 VDFADTEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDFADTEHR 9 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 145.17 0.0016867999999999998 0.0 63785.0 75755.0 67967.0 67350.0 70736.0 76939.0 67579.0 60747.0 84098.0 74121.0 False True 63441.58864717973 78276.45938013542 77536.16282024553 75876.503094449 79743.81031488028 71620.3880249248 64309.945593150085 65280.2496070157 63373.17475546543 69390.53432181936 0.9142686285272049 1.1280567320191675 1.1173881794979181 1.0934705120232828 1.149203001450378 1.0321348397861274 0.9267826832820378 0.9407659163461549 0.9132827031069306 1.0 16.082451255345028 2.392762332697882 4.08192215718339 0.9403378769965788 1.086477595318175 0.49518779265953705 0.06406774206728 0.16801953702359348 5.347837185022792 0.02243729356558471 0.018581868667106465 247.0371866037942 -2.392762332697882 0.1461397183215961 VDFGS(ph)SER ddPTM_BT-474_Trastuzumab_2h_R1 1 VDFGSSER 8 0 A0A0G2JRG8;A0A0G2JNY3;E9PIR1;Q6ZUM4-3;Q6ZUM4;A0A0C4DGE6;E9PNT2;Q6ZUM4-2 A0A0G2JRG8 ARHGAP27 Rho GTPase-activating protein 27 1 VDFGS(0.831)S(0.169)ER 89.171 0.014792 0.0 381960.0 413840.0 395250.0 366850.0 365130.0 448640.0 441190.0 373270.0 488310.0 450350.0 True False 379903.56979974546 427614.4142284368 450897.76442541345 413293.1723860225 411627.1412049344 417626.57278496295 419847.9541905308 401125.30282665376 367972.5435187673 421608.27743596706 0.9010818575720312 1.0142457753177818 1.0694708537687447 0.9802776522782871 0.9763260429995979 0.9905559144255444 0.9958247422082371 0.9514170482280813 0.8727830149744964 1.0 18.685543666123973 1.604039579380096 4.292650736352086 0.9296588319650557 0.9927063751359491 0.1699655884440956 0.048434940844547206 0.238740022602445 9.93231447145621 0.02754836344302875 0.012344494798314044 40.18274296791314 -1.604039579380096 0.06304754317089334 VDFGSS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 1 VDFGSSER 8 0 A0A0G2JRG8;A0A0G2JNY3;E9PIR1;Q6ZUM4-3;Q6ZUM4;A0A0C4DGE6;E9PNT2;Q6ZUM4-2 A0A0G2JRG8 ARHGAP27 Rho GTPase-activating protein 27 1 VDFGS(0.267)S(0.733)ER 93.325 0.011695 313830000.0 577610.0 537360.0 498470.0 476000.0 465600.0 582760.0 573150.0 491760.0 634130.0 551740.0 True False 574500.2119385034 555245.7027590204 568650.2432210891 536261.5511946202 524891.400172589 542475.1728694832 545424.5448543767 528457.6283066821 477857.15840665996 516527.480831621 1.1122355213580215 1.0749586873191377 1.1009099502422395 1.0382052670871005 1.016192593136578 1.0502348722977641 1.0559448724320162 1.0230968301160923 0.9251340463769693 1.0 18.978485581329323 3.862113030141132 0.29261642754781986 0.9786102109984083 1.1626477534389519 0.6057368329296664 0.03211410764624442 3.5499523538219004 0.37194496975573166 0.04166782558189473 0.22643313173714527 7279.692422641503 -3.862113030141132 0.1840375424405436 VDGAEWGVDLPSVEAQLGSHR ddPTM_BT-474_Trastuzumab_2h_R1 4 VDGAEWGVDLPSVEAQLGSHR 21 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;;; 291.7 9.6596e-55 1850310000.0 1221430.0 1282010.0 1200900.0 1240660.0 1196030.0 1371020.0 1396630.0 1203170.0 1525260.0 1408020.0 False True 1214853.9565936304 1324680.92785859 1369976.2815900797 1397727.4287922643 1348337.3310747899 1276244.6144339333 1329069.671255289 1292956.6549734657 1149380.1104368859 1318158.9581334316 0.9216293293745957 1.0049477869758543 1.0393103753814514 1.060363334913344 1.0228943351294233 0.9682023602382137 1.0082772362578392 0.9808806798266171 0.8719586536546824 1.0 20.33009292622765 1.4579131820369944 5.753093946445729 0.932308308370327 1.0056010802973903 0.2497076601421503 0.04603255291684033 0.20540782801598942 15.050598051441018 0.028401731287690708 0.011577117502853852 28.702067538444464 -1.4579131820369944 0.0732927719270633 VDGEIILHLYDK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDGEIILHLYDK 12 0 P08243-2;P08243;P08243-3;F8WEJ5;C9J057;C9JT45;C9JM09 P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] 0 ;; 146.5 6.4793e-05 1048600000.0 2208710.0 2244740.0 1983840.0 1872070.0 1952260.0 2174640.0 2171830.0 2243430.0 3310030.0 2320660.0 False True 2196818.5507707517 2319454.8139260155 2263147.428153605 2109073.870052341 2200868.739048408 2024312.255351934 2066770.285703711 2410846.138506715 2494317.4586296137 2172553.4919830183 1.0111689120094278 1.067616895273272 1.041699289110666 0.9707811005966367 1.0130331645088952 0.9317663582608612 0.9513092742389727 1.1096832125897131 1.1481040479941889 1.0 21.050960268420724 1.6847535416448338 7.861267773434001 1.0960410526858877 0.9996602662502 0.3710172093790629 0.05166663466746812 0.122352389213955 14.07357129088211 0.026239840841192137 0.013747190984351215 48.389768190926056 -1.6847535416448338 -0.0963807864356877 VDGETAS(ph)DSESR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDGETASDSESR 12 0 O95674 O95674 CDS2 Phosphatidate cytidylyltransferase 2 1 VDGET(0.006)AS(0.994)DSESR;VDGET(0.41)AS(0.59)DSESR 281.32 4.7197e-28 526240000.0 572620.0 661620.0 648240.0 450800.0 642030.0 870260.0 572590.0 491300.0 603420.0 571420.0 True False 569537.0775440626 683641.6217422644 739506.5573969124 507871.233778435 723788.7148900504 810100.9745716873 544891.634193785 527963.3007708505 454715.2264137428 534951.486382725 1.0646518273931738 1.2779506911270844 1.3823806012716466 0.9493781150373032 1.3529987920665838 1.5143447493706181 1.0185814004897418 0.9869367862511652 0.8500120814477408 1.0 19.029048536925174 2.0242151110376096 24.672500119501226 0.9588383412736047 1.2550313106356679 0.4686906290937666 0.15413611191458007 174.7486122141647 178048.4667952595 0.058298587586345235 0.04305432236740316 105.73410927038736 -2.0242151110376096 0.2961929693620632 VDGPRS(ph)PS(ph)YGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDGPRSPSYGR 11 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 VDGPRS(1)PS(0.992)Y(0.008)GR 101.39 0.039703 2853400000.0 2897200.0 3066900.0 2381900.0 3294800.0 3164200.0 3363900.0 3414200.0 3074500.0 3894500.0 3487900.0 True False 2881601.797109178 3168979.912519796 2717250.8161540586 3711921.3421765477 3567142.1143172346 3131361.51076885 3249042.1024894235 3303934.8019946665 2934752.6586263645 3265299.2358585782 0.8824924115573405 0.9705021450159816 0.8321598174874727 1.1367783085278353 1.092439576484723 0.9589814851824718 0.9950212424054055 1.011832167083434 0.8987698972264943 1.0 21.638783777422862 3.7564830430571616 24.99516761488996 1.0136539079039928 0.9025965356602916 0.37825845269327296 0.06933096566161043 947.7816249080165 1321801.542162369 0.018110369934039014 0.032570863975746295 5707.987890100437 -3.7564830430571616 -0.11105737224370116 VDGPRS(ph)PSYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDGPRSPSYGR 11 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 VDGPRS(0.799)PS(0.201)YGR;VDGPRS(0.989)PS(0.011)YGR 101.43 0.0019916 788560000.0 418870.0 714910.0 652390.0 990290.0 877950.0 742220.0 929290.0 663500.0 1117130.0 847810.0 True False 416614.8504608317 738705.3471777784 744240.8413244658 1115660.6124632778 989751.7284826552 690912.0783979468 884336.6924674578 713013.7391847328 841828.2802750724 793702.039953341 0.5249008185556926 0.9307086412694672 0.9376829135631517 1.4056416089454218 1.2470066582427322 0.8704930107506882 1.1141922887327402 0.8983393052972982 1.0606351475732134 1.0 19.59823798790263 4.76919730721551 1.8375416610376198 1.068743749665449 0.3258194146205244 0.5349161207534499 0.15306768483507388 0.7697426661714885 2.500800345154835 0.04203754781336933 1.0115204190971296 58775.63193653409 -4.76919730721551 -0.7429243350449246 VDHCPIK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDHCPIK 7 0 A0A494C1N0;P26885 A0A494C1N0 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 0 66.682 0.067212 94363000.0 113010.0 161290.0 149610.0 156800.0 111540.0 120180.0 134130.0 105290.0 146810.0 140060.0 False True 112401.56671659125 166658.4401481359 170673.78756656797 176650.863922934 125743.95785062423 111872.23947329 127641.61947364142 113147.27445178671 110630.64265321274 131121.25088860103 0.8572337889918866 1.271025398390432 1.3016485612356634 1.3472329063807844 0.9589899196237436 0.8531968595108603 0.9734624906994225 0.8629209505323833 0.8437277855685128 1.0 17.000541997273682 3.108983916642018 6.265051497857846 0.9016511961759425 1.2061479530537862 0.5141906959872811 0.13321435390023725 0.1615363496019866 8.367901438026419 0.03862435645031089 0.04638993219125125 1285.2390624180741 -3.108983916642018 0.3044967568778437 VDHGAEIITQS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDHGAEIITQSPGR 14 0 P11137-4;A0A669KB77;P11137-2;P11137-3;P11137 P11137-4 MAP2 Microtubule-associated protein 2 1 VDHGAEIIT(0.031)QS(0.969)PGR 85.054 0.0045069 0.0 225360.0 246830.0 215990.0 256130.0 229970.0 253050.0 238420.0 216430.0 269620.0 252760.0 True False 224146.68679984967 255045.5873381141 246399.51458126516 288556.03173839964 259255.3163610189 235557.24911562665 226886.7137471525 232581.10560927115 203175.76372290164 236628.64040127702 0.9472508755480303 1.0778305910290717 1.0412920184277719 1.2194467721619144 1.095621036918318 0.9954722670770813 0.9588303147175926 0.9828949919792379 0.8586271018518904 1.0 17.852265175604966 2.5625021255393623 3.3630221401201954 0.9538726161394179 1.0819495734288562 0.4103297094913114 0.07150025361523817 0.25656910712619635 5.553681477764682 0.025444240318256282 0.023173002283566307 365.17591450729736 -2.5625021255393623 0.12807695728943835 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK 30 0 P06744;A0A2U3TZU2;P06744-2;K7EQ48;K7ESF4 P06744;K7ESF4 GPI Glucose-6-phosphate isomerase 0 ; 285.35 2.3001999999999985e-72 8902700000.0 1933840.0 1681290.0 1824830.0 1652110.0 1577300.0 2599990.0 2463750.0 1600210.0 2485940.0 2240720.0 False True 1923428.4203098242 1737250.7212887318 2081750.2022933017 1861266.956605347 1778159.8056104481 2420258.8110181293 2344569.000061017 1719625.7959017318 1873313.3968893634 2097715.3312230953 0.9169158425268069 0.828163238086175 0.9923892776621482 0.8872829067422201 0.8476649710967565 1.1537594138700276 1.117677391762204 0.8197612756632168 0.8930255545194057 1.0 21.000387480748568 VDHSQNQK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDHSQNQK 8 0 E7EQ69;Q9GZZ1 E7EQ69 NAA50 N-alpha-acetyltransferase 50 0 ;;; 160.63 0.00035223 318987000.0 513490.0 441434.0 401303.0 371426.0 406611.0 349029.0 487097.0 459892.0 656640.0 562450.0 False True 510725.4268941017 456126.8638375122 457802.97421179444 418448.493516834 458390.50067778537 324901.44675589015 463534.2572187597 494211.4763242577 494819.87052520656 526553.9594623287 0.9699393912365796 0.8662490436939634 0.869432212947868 0.7946925210554249 0.8705480083102102 0.6170335269867715 0.8803167251692129 0.938577077321579 0.9397325034465105 1.0 19.006221855753946 1.7908904452369092 3.6348980014998737 0.956043948444501 0.8296787293201455 0.30045338157442136 0.08612016444529631 0.2931092087717912 7.237128028451805 0.04644827066433127 0.02389176981626091 61.7860519499743 -1.7908904452369092 -0.1263652191243555 VDHVQMIVLDEADK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDHVQMIVLDEADK 14 0 P26196 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 148.57 7.7225e-06 197560000.0 325520.0 237710.0 209470.0 191770.0 207810.0 305090.0 270370.0 246660.0 362730.0 255380.0 False True 323767.4364886723 245622.03365127076 238961.5552541207 216048.0623373787 234273.37171362914 283999.84640460997 257291.17018630015 265067.0217141011 273340.0518329803 239081.4297581819 1.3542140718170614 1.0273572225986114 0.9994986038682199 0.9036589021401611 0.9798894541938458 1.1878791535246407 1.076165432198295 1.108689294614819 1.143292693662779 1.0 17.86714254996426 2.749445736342187 24.58935108591293 1.1074472870015555 1.0402427562747978 0.03656557833608143 0.11957465568100989 1799.039982687143 4064004.833105396 0.037214884924201524 0.039106464161607894 561.6241008993194 -2.749445736342187 -0.0672045307267577 VDIAEGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDIAEGR 7 0 Q15056;Q15056-2 Q15056;Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 85.272 0.048698000000000005 467440000.0 866880.0 1143100.0 1049200.0 1108900.0 1049400.0 1015600.0 1062900.0 958640.0 999560.0 1016900.0 False True 862212.8143994216 1181147.392481457 1196918.2401901155 1249286.6263019228 1183034.869718889 945393.9624652464 1011483.4663276916 1030178.5846752863 753231.8314177861 952000.5713881087 0.9056851858210885 1.2407002978572064 1.2572663044150207 1.31227508033986 1.242682940824195 0.9930602889100906 1.0624819949980189 1.0821197125682251 0.7912094320694592 1.0 19.860602913871862 2.7339214437628487 24.665671598900772 1.0047575774833177 1.2047817306582425 0.3901841872567965 0.12711181109325595 363.34428840617704 1931831.8066598985 0.04096677571527846 0.03984968926368951 541.9028608347664 -2.7339214437628487 0.20002415317492472 VDIAPHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDIAPHVR 8 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 87.476 0.015297 234750000.0 259300.0 317780.0 297460.0 283810.0 293860.0 309880.0 290980.0 246700.0 405000.0 315090.0 False True 257903.95761093858 328357.1151979332 339339.78243133053 319740.31690030487 331281.3291553203 288458.72497905703 276904.1857484544 265110.00671721663 305193.1767219613 294980.68643787905 0.8743079444465643 1.1131478442304155 1.1503796622386435 1.0839364460142038 1.1230610829332581 0.9778902085503299 0.9387197144744884 0.8987368289043799 1.034620877751035 1.0 18.1702609730047 2.6021189848775355 5.225345897135655 0.9530377451611967 1.0763567384891002 0.27303291378077577 0.07874963792381338 0.2564016767501105 9.875976485148978 0.02591795575535238 0.024286947483187854 400.0543387576734 -2.6021189848775355 0.12331899332790353 VDIDAPDVDVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 VDIDAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;;;; 278.15 2.1048e-39 20155830000.0 9670630.0 9733370.0 8760720.0 7990130.0 7796900.0 11251170.0 10869680.0 4720580.0 13112100.0 9279800.0 False True 9618564.402587991 10057339.336503595 9994153.226456678 9001679.638753511 8789788.99915305 10473403.100305347 10343872.052190049 5072853.650219544 9880798.64813834 8687555.219163511 1.1071658435471934 1.1576719897352175 1.150398814664337 1.0361579767455276 1.0117678423227774 1.2055639171308528 1.1906539631970268 0.58392188852274 1.1373508885840178 1.0 23.050518812022954 VDIDAPDVEVHDPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 VDIDAPDVEVHDPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;;;; 254.59 8.929099999999997e-31 5264973000.0 3703210.0 3479954.0 3128543.0 2796172.0 2876790.0 4282811.0 3721965.0 1889363.0 4985822.0 3302422.0 False True 3683272.3288253057 3595782.1652133823 3569014.6606167587 3150167.0885020266 3243132.15442977 3986750.3562226715 3541919.3336629514 2030356.8610509145 3757132.974691952 3091658.6006142762 1.1913580393687333 1.1630592603267846 1.154401284769165 1.018924627666239 1.0489942692202165 1.2895183043271825 1.1456372747492927 0.6567209137022783 1.2152483375575343 1.0 21.559949586389624 VDIDT(ph)PDIDIHGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 5 VDIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK 261.63 2.8136e-26 2154460000.0 3773110.0 2880050.0 2736870.0 2354270.0 2486540.0 4347010.0 3692050.0 3118220.0 5489130.0 3810120.0 True False 3752795.994991934 2975910.7232230124 3122197.5066995085 2652320.3406112604 2803186.1301227477 4046511.4304608577 3513451.436499352 3350917.4104003245 4136407.4620736283 3566954.8795921532 1.0521007754998655 0.8343000749040255 0.8753117468804376 0.7435811301640372 0.7858765318733902 1.134444243635495 0.9850002467373743 0.9394336411632629 1.1596467019360184 1.0 21.766261535787617 2.7470682301534453 24.997922525694054 1.026758833271404 0.8514835390557755 0.466626337139756 0.09818268407945341 615.1367503786424 1807456.5834030872 0.03074739967427886 0.032131821986098624 558.5579404993133 -2.7470682301534453 -0.17527529421562849 VDIDT(ph)PDINIEGSEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDIDTPDINIEGSEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK 284.7 1.033e-34 493440000.0 1502720.0 1024590.0 991280.0 847380.0 906700.0 1798620.0 1468450.0 1281780.0 2512160.0 1618510.0 True False 1494629.5224878886 1058692.8587722646 1130843.607639781 954658.2211161719 1022162.8705680558 1674285.6328960613 1397415.4634762446 1377432.9323469577 1893071.8292193606 1515215.306123874 0.986413954800492 0.6987078697617861 0.7463253592208173 0.6300478996336943 0.6745990925757521 1.1049819957132765 0.922255377059926 0.9090674617527577 1.2493748060545236 1.0 20.531091378868688 2.7423533942613956 24.999082044282524 1.0118383713690275 0.7379646418377237 0.5591291475383229 0.12760317777779528 266.2421156247286 1754866.824440371 0.03992816223182599 0.040890525568609656 552.5268587585156 -2.7423533942613956 -0.27387372953130384 VDIDTPDIDIHGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 243.04 5.5991e-20 2970110000.0 2941440.0 2761620.0 2610560.0 2191990.0 2212770.0 3507850.0 3123240.0 2675500.0 4035810.0 3256500.0 False True 2925603.6138647087 2853538.852265458 2978104.1566057126 2469495.7092502047 2494553.1433846676 3265360.586090697 2972156.949264561 2875159.3959137145 3041238.7025833554 3048667.3819700824 0.959633586519416 0.9359954677710594 0.9768544034086227 0.810024643506498 0.8182437868222475 1.0710780078542335 0.9749036470301723 0.9430872691843984 0.9975633027628201 1.0 21.53974732624491 2.7386207765525654 24.999999999333813 0.9877761265418555 0.901396123634084 0.39878211540503883 0.05907025104456585 6.954530404152645 2890665.1477793567 0.020127721450730125 0.020128263913931008 547.7984215849048 -2.7386207765525654 -0.08638000290777159 VDIDVPDVDVQGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 5 VDIDVPDVDVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;;; 275.37 4.5706e-39 3926700000.0 4842320.0 4878460.0 4472100.0 4048760.0 4115860.0 6197590.0 5334410.0 4801640.0 7006290.0 5786590.0 False True 4816249.487152333 5040836.592008655 5101732.80780997 4561332.600871283 4639990.374386496 5769165.1908576 5076364.208874877 5159962.759033881 5279683.708976077 5417284.872051053 0.8890522837372664 0.930509786925813 0.9417508822788545 0.8419960752671853 0.856515853232163 1.0649551070540844 0.937067983089636 0.9524998003437567 0.9745996073079173 1.0 22.369138527345473 2.763786257720593 24.98716341661293 0.9763455171677666 0.8940961885198544 0.5411456591930905 0.04274886920020834 701.2113927944554 694581.1103056233 0.013567123587956509 0.014384572609026054 580.4786589548967 -2.763786257720593 -0.08224932864791223 VDIDVPDVNVQGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDIDVPDVNVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 251.75 1.8231e-30 1301580000.0 1682230.0 1752400.0 1648050.0 1537740.0 1431760.0 2327600.0 2021400.0 1826870.0 2461880.0 2154110.0 False True 1673173.060593323 1810727.5746518294 1880081.1148926069 1732417.7263319644 1614086.149293615 2166698.4905810426 1923617.1595021158 1963200.3160578948 1855182.6615018812 2016632.8555736463 0.8296865024136367 0.8978964959572447 0.932287257790315 0.85906451516142 0.800386716319008 1.074413959185798 0.9538757410331533 0.9735040816338618 0.9199407102658558 1.0 20.94351702280588 2.7469461275359786 24.999960427769324 0.979432072941278 0.8692895987002229 0.5914787571192537 0.04987957804695784 493.0516035500104 1469948.3917909293 0.015495308668309003 0.016191788108206442 558.4009230772299 -2.7469461275359786 -0.11014247424105506 VDIGDTIIYLVH ddPTM_BT-474_Trastuzumab_2h_R1 2 VDIGDTIIYLVH 12 0 A0A6I8PL42;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5;A0A6I8PLB3;A0A6I8PRS0;B4DER1;Q9P2J5-2;A0A6I8PS05;Q9P2J5-3 A0A6I8PL42 LARS Leucine--tRNA ligase, cytoplasmic 0 ; 145.92 0.00014959 29108000.0 55045.0 75179.0 64449.0 66920.0 71770.0 64491.0 68158.0 60779.0 74359.0 68857.0 False True 54748.64383607446 77681.28756833488 73522.85899924971 75392.06513853782 80909.48408588204 60032.888965484606 64860.937151155194 65314.63760950838 56034.220809551356 64462.48730855637 0.8493101355834194 1.2050619020719036 1.1405526232229442 1.1695494276797898 1.2551405858511233 0.9312840920663047 1.006181111825419 1.0132193208256628 0.8692531602346921 1.0 15.976172235934623 2.7187514586543164 24.981694872033472 0.9723407170532858 1.1318893404896129 0.34949842684295596 0.10852806549894845 918.8130214563852 1158730.7644066694 0.034300212399167904 0.03237650722712285 523.3008722764587 -2.7187514586543164 0.15954862343632703 VDIIENQVMDFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDIIENQVMDFR 12 0 P21266;A0A0A0MTN3 P21266 GSTM3 Glutathione S-transferase Mu 3 0 115.92 0.0020882 108790000.0 79642.0 94666.0 85691.0 80011.0 92343.0 107420.0 104420.0 89100.0 123960.0 93405.0 False True 79213.21632105805 97816.90058319464 97755.54796047593 90140.38439628742 104102.33369015764 99994.3082394809 99368.80567686308 95749.09444063254 93411.7189788995 87443.81293195621 0.9058755978847498 1.118625747247666 1.1179241238776232 1.0308377616885203 1.1905054251369864 1.1435263958273498 1.1363732017745636 1.0949784922478052 1.0682484654641853 1.0 16.416068689732313 4.7406557950732084 24.642545753681066 1.106701725884609 0.9058755131959318 0.5426882329438152 0.05318301012317782 108.47033149319519 1275670.4876576343 0.012064710464042096 0.07934744480390737 55037.13205833746 -4.7406557950732084 -0.20082621268867717 VDIIPGFEFDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VDIIPGFEFDR 11 0 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 ;;; 157.96 7.0598e-05 754984000.0 356840.0 400428.0 374375.0 360759.0 359640.0 395028.0 407818.0 352787.0 417011.0 366424.0 False True 354918.81308865076 413756.0039161629 427083.74587416614 406431.05241054634 405438.02224671387 367720.64415588963 388090.2853239507 379113.75735608774 314244.2267111154 343038.5066086306 1.0346325740438647 1.2061503182446314 1.2450023471021636 1.1847971716896486 1.1819023649997238 1.0719515071100127 1.1313315498038803 1.1051638520238052 0.9160610854385326 1.0 18.388011004698527 1.3961528744690535 3.3538070588207334 0.9589141093898459 1.1547165031669493 0.5929736320320794 0.06234689191185195 0.16390881427034804 3.1050553039311013 0.05012617618307863 0.016620152627261395 24.897335663836024 -1.3961528744690535 0.1958023937771034 VDIKDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDIKDR 6 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 ; 98.418 0.036441 1482560000.0 3393000.0 3669200.0 3245900.0 3452700.0 3370200.0 3996000.0 4253900.0 3615400.0 5865600.0 4355600.0 False True 3374732.464997741 3791327.1039217603 3702894.5061314353 3889811.465986698 3799374.9932595817 3719765.925572194 4048122.605523917 3885199.506629206 4420101.475013178 4077621.8789832345 0.8276227088126276 0.9297887877890084 0.9081014905322122 0.9539411896025612 0.9317624600854274 0.912239054029141 0.9927655691638889 0.9528101481538034 1.0839900329638563 1.0 21.95929656865909 7.99999999999999 0.1812222584190014 1.0318484724678658 0.27075097378014046 0.6060985176164075 0.04028464719668262 38.682091693908916 0.4370477335729577 0.08588734079024667 8.133536501880913 99999999.99999775 -7.99999999999999 -0.7610974986877254 VDILDPALLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDILDPALLR 10 0 P17980;E9PM69;E9PKD5;R4GNH3 P17980;R4GNH3 PSMC3 26S protease regulatory subunit 6A 0 74.92 0.09433 21771000.0 78300.0 82593.0 76465.0 74372.0 71798.0 79348.0 81886.0 79317.0 92074.0 88892.0 False True 77878.44149994786 85342.05807647707 87230.60735430545 83787.48757446704 80941.04971991318 73862.85952510085 77924.86134510241 85236.03730356501 69383.59642838972 83218.83645572989 0.9358270893558699 1.0255137143364972 1.048207486062482 1.0068332019883461 0.9726289523763237 0.8875738074563665 0.9363848939002682 1.0242397146336961 0.8337486966102904 1.0 16.344622496683822 3.0762524990757503 4.2518741520988765 0.9438070808018975 1.008323494186129 0.23323194552870352 0.0567323348445006 0.3389824239342262 11.810658866563518 0.01690160147346631 0.020300262284627904 1191.9347982297068 -3.0762524990757503 0.06451641338423153 VDINAPDVDVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDINAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 257.83 7.086799999999998e-31 2335960000.0 2964100.0 2862140.0 2698410.0 2514500.0 2540550.0 3611770.0 3271790.0 1504472.0 3847440.0 2887730.0 False True 2948141.61494247 2957404.599699837 3078322.672999824 2832835.442182506 2864073.983480391 3362096.8410920626 3113521.01824845 1616743.3401940186 2899289.965054669 2703432.5990899615 1.0905178904533752 1.0939442694799821 1.1386718773887905 1.0478661251388715 1.0594212648188475 1.2436399717247706 1.1516917489626093 0.5980335299419901 1.0724476600713617 1.0 21.36636095749152 1.777152911702368 24.999999999994028 0.8484453779029507 1.1177232860283415 0.3891284146436278 0.12762617612758703 40.59585198067317 26308.41884531698 0.05601040363131701 0.03110336555639915 59.86223282157439 -1.777152911702368 0.26927790812539076 VDINAPDVDVQGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDINAPDVDVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;; 261.63 8.526399999999997e-31 4316030000.0 3155970.0 3072600.0 2978050.0 2758920.0 2647320.0 3697200.0 3562670.0 2891070.0 4160850.0 3605260.0 False True 3138978.608181234 3174869.6335740774 3397333.5543253673 3108198.9891215605 2984440.5101050213 3441621.26627265 3390330.041378943 3106816.323955996 3135464.2700335085 3375169.220181621 0.9300211051380477 0.9406549498585539 1.0065668808577704 0.9209016752512057 0.8842343347586068 1.0196885079698177 1.0044918699503032 0.9204920172236031 0.9289798719676597 1.0 21.686528405412595 2.7335494586987545 24.998009856718618 0.9682735875157806 0.9397366866272733 0.16830949448813826 0.040970329458608366 1116.674848885866 5570493.9140089825 0.014086372973205318 0.013669101321129896 541.4389049841293 -2.7335494586987545 -0.028536900888507355 VDINAPDVDVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDINAPDVDVR 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 93.258 0.021832 112400000.0 84328.0 112690.0 112720.0 111170.0 96193.0 125590.0 98789.0 91999.0 125930.0 114610.0 False True 83873.9874177216 116440.81852745659 128589.99622019613 125244.11060148312 108442.60836941993 116908.2589070601 94010.19865937204 98864.43254145622 94896.23887554705 107295.4916774423 0.781710266726474 1.0852349591491457 1.1984659766206258 1.1672821350033882 1.010691191904187 1.089591529703002 0.8761803239784831 0.9214220560046269 0.8844382684859623 1.0 16.71122993290553 2.241756754309257 24.996007579192895 0.913411937042042 1.0663910327170447 0.25907940176299604 0.11065672753363756 104.66314634009244 818545.0629721483 0.0400975150632571 0.03224312142654007 174.48446023652616 -2.241756754309257 0.15297909567500267 VDINAPDVEVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDINAPDVEVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 208.86 3.3905e-16 544190000.0 510510.0 551380.0 439310.0 425490.0 455420.0 626550.0 591750.0 276460.0 698370.0 533170.0 False True 507761.47088299313 569732.3499837511 501161.0294490274 479356.99037352717 513415.0375141766 583238.0732400554 563124.7917954772 297090.8490354352 526266.0711785584 499142.63413019816 1.0172672822625421 1.1414219323832395 1.0040437245404743 0.9603607417924752 1.0285938375287245 1.1684797758388266 1.1281841167039834 0.5952023103639369 1.0543400527098337 1.0 18.929092610937584 1.7778179569133374 24.999999999972207 0.8405640462720647 1.0633829249113305 0.27100963774796805 0.1304334093753249 53.784131310941184 34264.42163828985 0.05812925244152122 0.03228668097859119 59.95397146966879 -1.7778179569133374 0.22281887863926575 VDINT(ph)PDVDVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK 261.03 1.7011e-30 2679570000.0 1645094.0 1477683.0 1487288.0 1144442.0 1256950.0 2201550.0 1841970.0 868677.0 2718100.0 1673471.0 True False 1636236.9966911245 1526866.7853767618 1696685.2226609567 1289328.2398577179 1417015.1319736585 2049362.0303912603 1752866.8740912792 933502.0887924265 2048260.6756739814 1566668.6480493948 1.0444052727603548 0.9745945878714117 1.082989197986084 0.8229744314236556 0.9044765999102204 1.3081017692814945 1.1188497812053069 0.5958516435205988 1.3073987777978453 1.0 20.579268649986417 VDINTPDVDVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 246.68 1.5106e-24 1766080000.0 716880.0 677970.0 638660.0 575530.0 559970.0 871360.0 758560.0 367962.0 912310.0 708240.0 False True 713020.3977328556 700535.8216084797 728577.7766677653 648392.0389895797 631278.8602977769 811124.934160809 721865.5548193944 395421.1929131762 687483.4248276845 663039.5168452293 1.0753814510565487 1.0565521417813217 1.0988451791446305 0.977908589935419 0.9520983957357911 1.2233432752548092 1.088721767676928 0.5963765097962899 1.0368664421372054 1.0 19.338735331287047 VDISAPDVDVHGPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDISAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;;; 270.42 3.602300000000001e-39 2933940000.0 3070880.0 3203480.0 2995050.0 2663420.0 2798800.0 3739890.0 3469930.0 1580220.0 4390170.0 3005660.0 False True 3054346.723286845 3310105.8952554427 3416727.006558723 3000608.698913392 3155210.5902127195 3481360.2070541023 3302076.229480148 1698144.0405945706 3308271.428764079 2813836.2055250113 1.0854742423491415 1.1763676537944883 1.214259380076895 1.066376462503983 1.1213199204763284 1.2372291607515737 1.173514017268123 0.6034978287862806 1.175715708778015 1.0 21.424106920516113 1.8061107820408677 24.999999999943597 0.8829767169833685 1.1553531481934058 0.3364464485536641 0.14226819091338141 140.62645777618772 52055.87048172121 0.05624238236358643 0.03562412181585394 63.989804310672575 -1.8061107820408677 0.2723764312100373 VDIVAINDPFIDLNYMVYMFQYDSTHGK ddPTM_BT-474_Trastuzumab_2h_R1 6 VDIVAINDPFIDLNYMVYMFQYDSTHGK 28 0 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;; 319.05 4.1066e-83 4983126000.0 2461220.0 2496950.0 2371144.0 2194710.0 2149863.0 3122636.0 3067425.0 2710036.0 3627086.0 3081731.0 False True 2447969.064987249 2580059.471311851 2704980.4648468858 2472560.0609713146 2423635.309813668 2906775.5232144804 2919041.934048565 2912272.647603968 2733239.2557623503 2885052.289177349 0.8485007617263219 0.8942851680679713 0.9375845543576581 0.8570243493494347 0.8400663374128132 1.007529580700711 1.0117812924912042 1.0094349618995575 0.9473794516707748 1.0 21.460166036081667 2.729735714791486 24.99709857370575 0.9983130724493566 0.8789598654617217 0.7885692014502134 0.0309523262217103 298.09471597711126 844370.592233613 0.010372041022044223 0.009914797927037916 536.7050908971138 -2.729735714791486 -0.11935320698763496 VDKDAELVAQWNYCTLSQEILR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDKDAELVAQWNYCTLSQEILR 22 1 Q9BY42;A2A2L6 Q9BY42 RTFDC1 Protein RTF2 homolog 0 ; 229.45 2.56e-26 1061760000.0 877840.0 832860.0 764070.0 749520.0 745430.0 976740.0 928270.0 843210.0 1164650.0 980780.0 False True 873113.8069771932 860581.2416254991 871644.4145845053 844409.1551499823 840356.091990234 909220.2627986463 883366.033764237 906134.6119336209 877637.6130104496 918185.7807119959 0.9509119236198015 0.9372626539241022 0.9493116021777197 0.9196495664474302 0.9152353582938195 0.9902356166892529 0.9620776669828645 0.9868750213393306 0.9558388198191179 1.0 19.80842656467144 2.7331047310177117 24.998813940575577 0.9775214133799766 0.9346298406414498 0.6597310801914745 0.015972536972805287 282.0362676322908 1292283.9455217482 0.0049949636080243885 0.004834913213636884 540.8847427002786 -2.7331047310177117 -0.04289157273852673 VDKGGDPALIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDKGGDPALIR 11 1 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 102.97 0.0025509 1609130000.0 434850.0 505820.0 485690.0 437760.0 434890.0 545810.0 578690.0 459610.0 686790.0 524900.0 False True 432508.8159163772 522655.91292535304 554070.9303068403 493180.37111545564 490270.6637050202 508079.439398539 550696.5538895209 493908.43205229007 517539.80701450777 491400.4326105014 0.8801555456895508 1.0636049100502638 1.1275344780699723 1.0036221752909302 0.9977009200022893 1.0339417828743709 1.1206676212391928 1.005103779474644 1.0531936332761132 1.0 18.906539602232026 2.474238435391669 24.990927525628432 1.047787350720724 1.022212912952706 0.03832291843129876 0.06586270438312603 402.9487724529647 3493055.4953826074 0.022879546675855695 0.01925769362842168 298.01521368776474 -2.474238435391669 -0.025574437768018043 VDKGVVPLAGTNGETTTQGLDGLSER ddPTM_BT-474_Trastuzumab_2h_R1 2 VDKGVVPLAGTNGETTTQGLDGLSER 26 1 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ; 322.34 2.298899999999999e-82 2172200000.0 667590.0 823010.0 695350.0 720670.0 714560.0 972050.0 1045600.0 783330.0 1144010.0 956100.0 False True 663995.7696162222 850403.3903299492 793249.2359094531 811906.7481080401 805554.9804710598 904854.4714595722 995020.3334201094 841786.0622691426 862084.0644486186 895080.8794416068 0.7418276771038319 0.9500855284278561 0.8862319083436561 0.9070764070108898 0.8999801012100745 1.0109192277954397 1.1116541044210992 0.9404580989310016 0.9631353816723544 1.0 19.771658524520255 2.800547232575903 4.206317254722925 1.005607336522511 0.8810709959719117 0.49378973533344117 0.06504064346304265 0.20734965700369437 7.4405895688993375 0.020500374879773 0.021485343313239556 631.7528831156509 -2.800547232575903 -0.12453634055059937 VDKITEYLCEPLRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDKITEYLCEPLRK 14 2 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;K7ERB2;K7EN71;Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7 P63010;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 ; 103.13 0.00063757 1175900000.0 1407200.0 1365500.0 1255470.0 1238090.0 1153720.0 1703050.0 1655500.0 1584310.0 2387920.0 1783600.0 False True 1399623.7915546163 1410949.8420378184 1432229.2632591352 1394832.067055771 1300639.4033658055 1585322.1620484793 1575417.1403758544 1702539.2571631707 1799449.1124886558 1669769.1209832167 0.8382139626168619 0.8449969665309197 0.8577408967868504 0.8353442697721266 0.7789336783279026 0.9494259668156924 0.9434939960131706 1.0196255492859143 1.0776634265634755 1.0 20.671217204335154 2.2316267999448587 1.437445472675912 1.0349425730300421 0.8345305948645348 0.853576354430908 0.03539494028162035 0.14481803720038325 0.585418384015023 0.020667429335154575 0.012107850600312095 170.46169396913655 -2.2316267999448587 -0.20041197816550727 VDKLDASESLR ddPTM_BT-474_Trastuzumab_2h_R1 6 VDKLDASESLR 11 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 190.85 1.9048e-06 26109270000.0 16294900.0 15851300.0 14306600.0 14024400.0 13289570.0 17375000.0 18281400.0 16441100.0 22713900.0 18449100.0 False True 16207170.068933593 16378900.93818682 16320844.924803577 15799887.602045886 14981917.966047343 16173907.14635059 17397058.84027011 17668018.368214183 17116363.695666574 17271662.642930847 0.9383676837601421 0.9483106100900236 0.9449492652916984 0.9147867190720433 0.8674276632064326 0.9364418169069809 1.0072602273406832 1.0229483248646916 0.9910084541092032 1.0 24.041903633659356 2.2697715847019593 4.809265712224552 1.0094256950824287 0.9230705844925653 0.7503132938720478 0.022721357126052343 0.09853913077384188 5.434816058735353 0.009094575898320903 0.0072577135391800746 186.11080375133199 -2.2697715847019593 -0.08635511058986345 VDKWWGNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDKWWGNR 8 1 A0A2R8Y5Y7;P32969;D6RAN4;E7ESE0;H0Y9R4 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 ; 107.15 0.0037006 2023460000.0 3078800.0 3451900.0 3309500.0 2853300.0 3034200.0 3606700.0 3272300.0 2996100.0 4325500.0 3405500.0 False True 3062224.0828868346 3566794.4047823898 3775448.8333103256 3214527.487444558 3420587.384887607 3357377.318258565 3114006.3476000624 3219684.19588753 3259538.4837304777 3188158.074404761 0.9604994518531084 1.1187633491003488 1.1842100501918222 1.0082710494349376 1.0729039480033438 1.0530774321425067 0.9767415149832107 1.0098885063873926 1.0223892315436849 1.0 21.604291731747324 2.404824002721859 4.987248526605229 1.0031366380495927 1.0737956381987004 0.23333477458999208 0.057011124923170405 0.29589035266620345 13.74968650252131 0.020351594491883417 0.016968400557282305 253.99431882600018 -2.404824002721859 0.07065900014910764 VDKWWGNRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDKWWGNRK 9 2 A0A2R8Y5Y7;P32969;D6RAN4;E7ESE0;H0Y9R4 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 ; 109.42 0.0013792 2111800000.0 2476140.0 3310400.0 3191600.0 2683150.0 2058440.0 2868000.0 3299900.0 2695700.0 5636100.0 3438400.0 False True 2462808.7373650176 3420584.662820945 3640949.5381154944 3022836.5148904324 2320570.132670244 2669741.910545809 3140271.230157824 2896866.8224872407 4247158.674870725 3218958.368237656 0.7650949330896063 1.0626371240376362 1.1310955662060562 0.9390728829293316 0.7209071591505952 0.8293806893835235 0.9755550929591821 0.899939201162531 1.3194201940536425 1.0 21.61816248744903 1.2616340582182473 24.99931928012472 1.1597101602851732 0.9208556629113979 0.33188360594237265 0.13845120650012838 235.53423532907237 255194.63198344441 0.09426325347330929 0.03437434201068792 18.265604855849165 -1.2616340582182473 -0.2388544973737753 VDLENR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDLENR 6 0 P20700;E9PBF6;A0A0D9SFE5;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 0 ; 130.05 0.037058 1305140000.0 1369450.0 1759610.0 1594270.0 1679590.0 1773080.0 1765300.0 1596580.0 1590280.0 1869850.0 1713710.0 False True 1362077.033360197 1818177.5551432914 1818729.3583567447 1892225.9217877584 1998871.2281314742 1643268.9660692203 1519347.3258721128 1708954.7688782173 1409050.5222063197 1604339.5606190523 0.8489954787592624 1.133287241537401 1.133631185691742 1.17944228780198 1.24591531443642 1.024265066078123 0.9470235373899624 1.0652076473254815 0.878274497988831 1.0 20.613548091774984 2.493429390700891 23.7212473505539 0.9862085096200796 1.1170177930182947 0.26355126270788176 0.10606805889532729 516.0427978453534 750619.258518556 0.03501547580971669 0.03215896707138424 311.4794439315467 -2.493429390700891 0.13080928339821518 VDLHLLNHDGNIIDAASIAAIVALCHFR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDLHLLNHDGNIIDAASIAAIVALCHFR 28 0 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2;D6RA17 D6RIY6 EXOSC9 Exosome complex component RRP45 0 ; 160.52 3.3821e-12 280540000.0 109225.0 130999.0 115387.0 131255.0 132877.0 128368.0 125260.0 62509.0 143968.0 108695.0 False True 108636.94473603826 135359.2225244323 131632.4866382167 147871.8695421218 149798.09832631674 119494.22230576865 119200.69526033191 67173.73899427037 108489.01547236368 101757.99204152859 1.0676011049009526 1.3302072870029773 1.2935837667128494 1.4531720464941331 1.472101555081614 1.174298154949851 1.1714135948327749 0.6601323163575792 1.0661473688286625 1.0 16.63478258220483 2.0116073997929638 3.333669378405652 0.8762786998962945 1.3132906842687868 0.5586356008631261 0.1518644754353373 0.1561743766796183 3.5176045161701603 0.0699276560906169 0.04282729193037654 102.70873960629038 -2.0116073997929638 0.43701198437249233 VDLPDKYPFK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDLPDKYPFK 10 1 C9JZY6;P62256-2;P62256;H7C4M9;C9JZG9;C9J8Q9 C9JZY6 UBE2H Ubiquitin-conjugating enzyme E2 H 0 100.55 0.0035882 470360000.0 1481100.0 1359800.0 1252700.0 1226500.0 1091600.0 1503500.0 1445500.0 1342800.0 1829400.0 1383800.0 False True 1473125.92216568 1405060.1209835415 1429069.2713364072 1381774.774244121 1230608.7895798942 1399566.5838583068 1375575.642653757 1443006.5546002402 1378568.8827040866 1295484.699269216 1.137123366255635 1.0845825672631542 1.1031155150983616 1.066608332019345 0.9499215160735449 1.0803420408190103 1.061823148841295 1.1138738693048567 1.0641336663271581 1.0 20.305060545537835 3.7001905987508388 4.697752441809239 1.0541192052988877 1.106325089008304 0.27390900643407956 0.0443836217998926 0.33211912473956534 17.817712489600034 0.012667020327661942 0.02073675853836123 5014.072378626004 -3.7001905987508388 0.05220588370941637 VDLTLDWLTETS(ph)EEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDLTLDWLTETSEEAK 16 0 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 VDLTLDWLT(0.008)ET(0.479)S(0.512)EEAK 71.98 0.02064 0.0 63013.0 58238.0 50483.0 44844.0 46604.0 70691.0 65911.0 59746.0 97826.0 62087.0 True False 62673.74500940248 60176.41662438557 57590.56759389785 50521.2458020411 52538.743156450466 65804.2975587147 62722.63312552876 64204.54990404069 73718.0931012409 58124.554504644984 1.0782662429592291 1.0353011242361714 0.9908130580045227 0.8691893853225787 0.9038992832581946 1.13212562435134 1.0791073352745666 1.104602873109502 1.268277989044196 1.0 15.826860133170987 2.723995716879576 24.44615798591317 1.1184727699879755 0.9737617140082262 0.41893134846645397 0.08319915572977601 605.869879266413 1016908.2799631937 0.027795458970129885 0.026317392964327016 529.6582202445196 -2.723995716879576 -0.14471105597974931 VDLVCHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDLVCHGK 8 0 Q99447-3;Q99447;Q99447-4;I3L1L9;Q99447-2;I3L3V9 Q99447-3 PCYT2 Ethanolamine-phosphate cytidylyltransferase 0 ; 125.96 0.0012395 411750000.0 528970.0 798700.0 743230.0 723010.0 717180.0 702040.0 729890.0 643700.0 751160.0 731300.0 False True 526122.084294092 825284.246675654 847870.3237290313 814542.9918681154 808508.6219411024 653509.6272243999 694582.4322494306 691736.1626423702 566046.6830283165 684627.8079025706 0.7684789870074406 1.2054494970106446 1.2384397974230281 1.1897603083981552 1.1809462201339058 0.9545473024627725 1.0145401986772302 1.0103828016591625 0.8267947583993998 1.0 19.384960366709148 2.731247639155031 24.337354726009455 0.9703645734584887 1.1323818912250296 0.24591312758446138 0.13414803154583363 561.5162366740537 1868704.6609148285 0.042904462533486745 0.04123177256359125 538.5767969741382 -2.731247639155031 0.16201731776654094 VDLVDENFTELR ddPTM_BT-474_Trastuzumab_2h_R1 6 VDLVDENFTELR 12 0 D6RDM7;P61086;P61086-3 D6RDM7 UBE2K Ubiquitin-conjugating enzyme E2 K 0 ;;;;; 189.57 1.803e-05 602956000.0 647739.0 689898.0 606818.0 597619.0 613297.0 718318.0 642070.0 661450.0 786953.0 709491.0 False True 644251.6451945688 712860.837877853 692252.6998433908 673277.5041247428 691396.7376538839 668662.3673986918 611010.6211544086 710810.7577750434 593018.9777799442 664210.6769541954 0.9699507513923884 1.0732450751119325 1.042218566882702 1.0136505290943594 1.0409298760814159 1.0067022265659897 0.9199048469926123 1.0701585843734662 0.8928175929048479 1.0 19.341281388281747 2.4759206630228583 24.99831049736226 0.9819124407221742 1.0298365376376604 0.20762998696631596 0.050898278415069345 72.30839449753404 1505514.967279934 0.01679624553914086 0.014170578622501626 299.1718059208732 -2.4759206630228583 0.04792409691548616 VDLVDENFTELRGEIAGPPDTPYEGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDLVDENFTELRGEIAGPPDTPYEGGR 27 1 D6RDM7;P61086;P61086-3 D6RDM7 UBE2K Ubiquitin-conjugating enzyme E2 K 0 ; 205.89 2.6855e-25 324480000.0 90153.0 121820.0 124847.0 136745.0 144685.0 132539.0 140450.0 112677.0 182643.0 140255.0 False True 89667.62626493994 125874.70505825491 142424.3724104228 154056.90297921936 163109.77713481747 123376.89089324669 133655.89692889695 121085.52990221258 137633.0799408129 131303.8058216534 0.6829019593440664 0.9586523731781796 1.0846934064034228 1.1732858923257024 1.2422319072484869 0.9396292066417813 1.0179133505881646 0.9221783720928848 1.0482032800157857 1.0 17.0025492075789 4.698045035941784 2.837133014635733 1.0485012806047995 0.6345251210835477 0.5904796620002563 0.0927352797785675 0.2890769685733348 3.432084747646229 0.025693237460747587 0.26352268895244046 49893.62240089497 -4.698045035941784 -0.4139761595212518 VDNDENEHQLSLR ddPTM_BT-474_Trastuzumab_2h_R1 10 VDNDENEHQLSLR 13 0 P06748;P06748-3;P06748-2;E5RGW4 P06748 NPM1 Nucleophosmin 0 ;;;;;;;;; 297.77 9.212899999999998e-41 191282590000.0 48499588.0 52894868.0 48688409.0 48217216.0 47036534.0 54079601.0 53578863.0 49925870.0 62714330.0 53200685.0 False True 48238471.60701874 54655441.70575714 55543313.77996244 54321510.60177741 53026357.79752065 50341205.47255763 50987048.70555699 53651591.93783095 47259223.70046766 49805371.73590211 0.9685395355105065 1.0973804591916914 1.1152072927893468 1.090675738549299 1.0646714591088315 1.0107585531034047 1.0237258939843044 1.077225007421364 0.9488780437392246 1.0 25.569798016119503 2.834832985766651 5.098761395457846 1.022902344320277 1.0737654944449462 0.23198917374874373 0.047711403438176085 0.3753131380926747 15.489384570432778 0.014874014181483673 0.015801469698846094 683.6486897169831 -2.834832985766651 0.05086315012466924 VDNEFDQR ddPTM_BT-474_Trastuzumab_2h_R1 3 VDNEFDQR 8 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 120.12 0.0036365 1247490000.0 2117330.0 2371740.0 2009720.0 2120250.0 2096060.0 2351800.0 2378170.0 2142790.0 2831870.0 2530540.0 False True 2105930.5305374763 2450681.932152896 2292671.1072006114 2388673.4326058696 2362980.816679029 2189225.6015417157 2263128.8316083644 2302695.870667145 2133993.5836138767 2369038.7706957064 0.8889388204985079 1.0344625687291786 0.9677642829489581 1.0082880289478746 0.9974428641305442 0.9240986802840776 0.9552941300930082 0.9719958572019999 0.9007845755885182 1.0 21.175870378637956 2.753430557128777 24.770731204868195 0.951080585584829 0.9834002541826731 0.0971345115258051 0.04324052114374094 1523.657355271154 2538147.3395208237 0.012393436773330354 0.013103373000553926 566.8009338731949 -2.753430557128777 0.032319668597844076 VDNIQAGELTEGIWR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDNIQAGELTEGIWR 15 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 113.76 0.0015351 31925000.0 29006.0 27307.0 23873.0 28970.0 31088.0 27156.0 24718.0 24829.0 33775.0 31740.0 False True 28849.83491886955 28215.896987569926 27234.110892164168 32637.59902963897 35046.87252698766 25278.769638347992 23522.29590807028 26681.86605910735 25451.603811812925 29714.32602601885 0.9709065887480562 0.9495721680802435 0.9165313346941497 1.0983792464638236 1.1794604560877286 0.8507266702335117 0.7916146537354869 0.8979461972566304 0.8565431970264665 1.0 14.858871037969067 2.6647634045230166 24.999658273725842 0.8679319425439374 1.017171179897241 0.40555036933473787 0.08623454184706837 141.3559555953673 47885.350544623856 0.029214653775516148 0.027543841998847286 462.12919350485225 -2.6647634045230166 0.14923923735330358 VDNLTYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDNLTYR 7 0 Q01130;Q01130-2;J3KP15;J3QL05;Q9BRL6-2;Q9BRL6 Q01130;Q9BRL6-2 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 0 ; 135.77 0.0070846999999999985 2682700000.0 1283010.0 1580690.0 1480740.0 1526440.0 1370160.0 1442350.0 1504680.0 1321600.0 1871990.0 1447980.0 False True 1276102.416715812 1633302.3111027174 1689215.3211771953 1719687.1474905799 1544641.7544254174 1342643.7394266904 1431892.879964205 1420224.5029488215 1410663.1478808504 1355568.676721952 0.9413779166111259 1.204883484806084 1.2461303880686228 1.26860938661488 1.1394787891976699 0.9904653024835918 1.0563041950975298 1.047696459306821 1.0406430689237585 1.0 20.370466775127113 2.8867344150318934 5.194291664319518 1.034535444660973 1.1771436457131423 0.3732729328978255 0.08572430825653227 0.2441719366883516 9.559729959853145 0.026818411651037315 0.028660550921577294 770.4321810515979 -2.8867344150318934 0.14260820105216943 VDNLTYRT(ph)SPDTLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDNLTYRTSPDTLR 14 1 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 VDNLTYRT(0.726)S(0.274)PDTLR 124.63 0.00015509 516530000.0 97165.0 175210.0 161550.0 221110.0 201550.0 181660.0 232740.0 162050.0 256920.0 191770.0 True False 96641.8744360464 181041.75893331826 184294.83578222748 249102.50332908105 227216.19781955623 169102.27178164312 221481.47704685997 174142.99387322654 193605.50855162033 179531.0744174427 0.5383016547393701 1.008414613017705 1.0265344669731558 1.3875174765003189 1.2656093022160435 0.9419108771579526 1.2336665268981508 0.9699880337612871 1.0783955322489298 1.0 17.45387405123113 4.814611822489487 2.0220831103484693 1.1195971170962884 0.29254571292378934 0.617105667730544 0.1354839832784517 0.6284580227877747 2.3614605046146653 0.035290467807838115 1.0244104447023974 65254.70377008975 -4.814611822489487 -0.827051404172499 VDNLTYRTS(ph)PDTLR ddPTM_BT-474_Trastuzumab_2h_R1 5 VDNLTYRTSPDTLR 14 1 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 1 VDNLTYRT(0.085)S(0.915)PDTLR;VDNLTYRT(0.154)S(0.817)PDT(0.029)LR;VDNLTYRT(0.018)S(0.982)PDTLR;VDNLTYRT(0.045)S(0.95)PDT(0.005)LR;VDNLTYRT(0.078)S(0.922)PDTLR 222.7 2.2978e-12 3551440000.0 1037648.0 1875390.0 1871100.0 2739140.0 2469520.0 1927500.0 2617170.0 1906000.0 3164760.0 2470640.0 True False 1032061.4184615305 1937811.2224528044 2134534.6161072506 3085914.8431496504 2783998.7340081884 1794256.4618469493 2490567.4885397023 2048235.3984718923 2384847.303611344 2312961.6399786775 0.44620775399934637 0.8378051710665935 0.9228577678127546 1.3341833214225285 1.2036510618627696 0.7757398267372433 1.0767872002246703 0.885546635564079 1.0310794880425813 1.0 21.141309908678544 4.681046058702582 1.9094660676944641 1.0287876540788476 0.3132846606934801 0.5928162658422371 0.148107017083871 0.510128348002287 2.1501941482752254 0.040345348751176416 0.6206613930710514 47978.43290251621 -4.681046058702582 -0.7155029933853676 VDNNAIEFLLLQASDGIHHWTPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDNNAIEFLLLQASDGIHHWTPPK 24 0 P50583 P50583 NUDT2 Bis(5-nucleosyl)-tetraphosphatase [asymmetrical] 0 236.98 1.1534000000000002e-37 275030000.0 280240.0 381470.0 336330.0 304590.0 282020.0 380320.0 364140.0 245090.0 454020.0 359190.0 False True 278731.2189775912 394166.9983465158 383682.34056723374 343151.0627696841 317933.5753364982 354029.3735769814 346525.15705011383 263379.86034180294 342132.85455630824 336266.1866819697 0.8289005258837003 1.172187433520656 1.1410077960949099 1.0204744823012073 0.9454818472045484 1.0528247786977512 1.0305084804076563 0.7832481253635519 1.0174464995491417 1.0 18.35924419008747 1.9427157192219926 24.659158704053645 0.908830388504073 1.0352131848350112 0.12177392688027289 0.10815670613393487 353.73445338899904 152271.18152145366 0.04370443337030121 0.028205661057655592 87.64269411941655 -1.9427157192219926 0.12638279633093819 VDPSLMEDS(ph)DDGPSLPTK ddPTM_BT-474_Trastuzumab_2h_R1 6 VDPSLMEDSDDGPSLPTK 18 0 O15258;Q5T092;A0A0A0MR06;Q5T091 O15258 RER1 Protein RER1 1 VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK 368.58 1.576499999999999e-107 839827000.0 1113137.0 1170319.0 1003539.0 939640.0 1019308.0 1175688.0 1150663.0 1132984.0 1376435.0 1205297.0 True False 1107143.9940731474 1209272.3604422256 1144828.5682826433 1058598.3276565413 1149110.8318881472 1094415.4558318628 1095001.0347304756 1217533.0192561795 1037231.0375340566 1128373.9135533234 0.9811853861338202 1.071694715658702 1.0145826259643873 0.9381627091350825 1.018377700942697 0.9699049603029875 0.9704239185060967 1.0790155680062545 0.9192263531401113 1.0 20.105813787628744 3.9941299761251847 24.927929078707617 0.9921263006776667 1.030614706213663 0.10930853084099734 0.046500487864846105 572.5307514395066 2431385.7544532814 0.011556956652100506 0.02371610480450714 9865.747046035578 -3.9941299761251847 0.038488405535996306 VDQDSALHNDLQILK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDQDSALHNDLQILK 15 0 Q7Z7E8;Q7Z7E8-2 Q7Z7E8 UBE2Q1 Ubiquitin-conjugating enzyme E2 Q1 0 118.33 0.00029929 127160000.0 166900.0 157990.0 145430.0 137090.0 138070.0 167480.0 175210.0 158580.0 201740.0 176400.0 False True 166001.42894433328 163248.6016430281 165905.27989977953 154445.57994384578 155652.39609499442 155902.5018055132 166734.42293280168 170414.04485292363 152023.88017750232 165142.00097636206 1.005204175575505 0.9885347196828201 1.0046219551592253 0.9352289486061917 0.9425366967502957 0.9440511855480582 1.009642743499684 1.031924306629397 0.9205646006388318 1.0 17.33334756557877 2.219958660158746 24.968909821695252 0.997930507179957 0.9696116007432317 0.05848298311392797 0.03563946774334032 545.8422050464807 732664.5474515886 0.013973812890638716 0.01033792932892854 165.9428941363937 -2.219958660158746 -0.0283189064367253 VDQICHK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDQICHK 7 0 Q9UBE0;M0QX65;B3KNJ4;Q9UBE0-2;Q9UBE0-3;A0A590UK93;A0A590UKC5;M0QYM8;M0R054;M0R286;M0QYP2 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ;; 105.57 0.0078976 2219540000.0 3166940.0 3139710.0 3028000.0 2822010.0 2798290.0 3197190.0 3538380.0 3028640.0 4406400.0 3592770.0 False True 3149889.5469201086 3244213.3493552227 3454316.0801521866 3179276.1766527924 3154635.6447357293 2976175.7806757158 3367215.041475757 3254652.4959222996 3320501.762734941 3363476.3426748533 0.9364982018619205 0.9645417475346995 1.0270076932977896 0.9452351831095167 0.9379092710451353 0.8848511116058182 1.0011115579299512 0.9676454252489227 0.9872231656888254 1.0 21.68152168019875 VDRDYVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDRDYVLK 8 1 Q9BUP3-3;Q9BUP3 Q9BUP3-3 HTATIP2 Oxidoreductase HTATIP2 0 109.29 0.0033258000000000003 260650000.0 102640.0 105300.0 95498.0 82531.0 94791.0 104080.0 109900.0 102200.0 140430.0 123370.0 False True 102087.39764437608 108804.84684480586 108943.28831650378 92979.41613790585 106862.07197972482 96885.19457796653 104583.71714123014 109826.6829610845 105822.90816559264 115496.42097762898 0.8839009623003802 0.9420624979009589 0.9432611625048147 0.8050415359270349 0.9252414150601551 0.8388588473813631 0.9055147878693784 0.9509098379971214 0.9162440469570045 1.0 16.817488620296086 1.0433868202441376 0.920154095661537 0.995732022805275 0.8926349340651243 0.34403105031632775 0.04357459203212051 0.662240856404324 1.2243631054863529 0.04102990102721511 0.014208239696843499 11.05062445929727 -1.0433868202441376 -0.10309708874015067 VDS(ph)EGDFS(ph)ENDDAAGDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDSEGDFSENDDAAGDFR 18 0 O43823;M0QYL4 O43823 AKAP8 A-kinase anchor protein 8 2 VDS(1)EGDFS(1)ENDDAAGDFR;VDS(1)EGDFS(1)ENDDAAGDFR 338.94 4.2996e-75 2488200000.0 2150100.0 1700350.0 1595360.0 1456700.0 1438490.0 1889830.0 1688420.0 1729220.0 2349400.0 1709190.0 True False 2138524.1004985687 1756945.1218667182 1819972.820882297 1641118.0706411845 1621673.1749017786 1759190.5002813055 1606744.6742092401 1858263.1772012378 1770421.8503470984 1600108.0308888196 1.3364873241156552 1.0980165638508668 1.1374062161736342 1.0256295443561925 1.0134773050298236 1.0994198306123866 1.0041476220307037 1.1613360731456486 1.1064389504774086 1.0 20.609737880915667 5.359657485063211 1.3786992008345762 1.0707065956222894 2.1744888927534283 0.685055161680695 0.05420937722153074 3.6133245509419596 1.8049113988789656 0.014831020858086082 8.461742324264382 228906.16269353137 -5.359657485063211 1.1037822971311388 VDS(ph)PSHGLVTSSLCIPSPAR ddPTM_BT-474_Trastuzumab_2h_R1 5 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 VDS(0.974)PS(0.026)HGLVTSSLCIPSPAR;VDS(0.758)PS(0.242)HGLVTSSLCIPSPAR;VDS(1)PSHGLVTSSLCIPSPAR;VDS(0.961)PS(0.039)HGLVTSSLCIPSPAR;VDS(0.995)PS(0.005)HGLVTSSLCIPSPAR 316.14 1.2260999999999994e-66 2020140000.0 661004.0 692642.0 623380.0 614258.0 629979.0 776072.0 758258.0 670436.0 967890.0 755472.0 True False 657445.2279084479 715696.1702590686 711146.4854839058 692022.9998187083 710203.0914719237 722423.9693169832 721578.1637131467 720467.3387250266 729366.4785615284 707257.1301678797 0.9295703074105337 1.0119320678876518 1.0054992097642095 0.9784602661473977 1.0041653327741562 1.0214445899548632 1.0202486944767424 1.018678084664924 1.0312606935307964 1.0 19.431875290570165 5.68698980874414 1.5289122048035875 1.0117507247649224 8.061105596261855e-13 0.7312369863142045 0.014446311409527448 10.18290663295693 2.242190738068975 0.004135503695549604 30.1605521558036 486395.7916801622 -5.68698980874414 -1.0117507247641164 VDS(ph)PTVTTTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDSPTVTTTLK 11 0 Q07866-6;Q07866-4;Q07866-9;G3V5R9;Q07866-7;G3V3H3;Q07866-5;Q07866-10;G3V2E7;F8W6L3;Q07866-8;Q07866;Q07866-3;Q07866-2;E7EVH7;H0YG16;G5E9S8;H0YJU9;H0YJT3;H0YJL0 Q07866-6 KLC1 Kinesin light chain 1 1 VDS(0.796)PT(0.204)VT(0.001)TTLK;VDS(1)PTVTTTLK 182.23 6.162400000000001e-06 300500000.0 832450.0 592560.0 556650.0 494040.0 525210.0 770180.0 698760.0 650840.0 1048770.0 696080.0 True False 827968.1816938892 612283.0013899156 635021.4815114639 556585.413344937 592092.3803364377 716939.2694087082 664958.3092775785 699408.9856985548 790314.6862980021 651655.5784559296 1.2705610280444846 0.9395806951283902 0.9744740972157723 0.8541097962573153 0.9085971177280114 1.1001812815098821 1.020413745023359 1.0732801326672823 1.2127797450466387 1.0 19.313750128243974 2.719600163572972 24.303498931136332 1.0796547665044025 0.9783407061828336 0.1314340185613735 0.11629536292019706 1124.8303072887609 1441804.3362938212 0.03773223321245266 0.03563494892827053 524.3245147275455 -2.719600163572972 -0.10131406032156887 VDS(ph)TTCLFPVEEK ddPTM_BT-474_Trastuzumab_2h_R1 8 VDSTTCLFPVEEK 13 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 VDS(0.965)T(0.033)T(0.001)CLFPVEEK;VDS(0.942)T(0.055)T(0.003)CLFPVEEK;VDS(0.992)T(0.008)TCLFPVEEK;VDS(0.991)T(0.009)TCLFPVEEK;VDS(0.841)T(0.123)T(0.036)CLFPVEEK;VDS(0.485)T(0.485)T(0.03)CLFPVEEK;VDS(0.987)T(0.007)T(0.007)CLFPVEEK;VDS(0.852)T(0.144)T(0.003)CLFPVEEK 307.01 7.095499999999999e-42 6222350000.0 12778700.0 6015740.0 4935180.0 5664960.0 5035240.0 7458400.0 6053770.0 6845360.0 13744820.0 7494090.0 True False 12709900.899047026 6215970.269308382 5630010.446646451 6382143.355158562 5676447.967794306 6942818.3631851 5760926.017452817 7356195.523233751 10357593.282151962 7015810.760186754 1.8116082849858255 0.8859945745091503 0.8024746731476243 0.9096800887754668 0.8090936545790189 0.9895960139894493 0.8211347504047368 1.0485168107695562 1.4763216449521583 1.0 22.742178403335135 -0.6146139344726533 8.407669321992255 1.0000151638929968 1.0253637120872199 0.0 0.3153295367576265 0.0 0.0 0.2925475477088186 0.06895411826813358 0.2428768186114269 0.6146139344726533 0.025348548194223053 VDSDKEDDITELK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDSDKEDDITELK 13 1 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3;H0Y8M2 P52306-4 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 0 100.54 0.0013148 0.0 266700.0 205810.0 162500.0 162430.0 175680.0 285500.0 244510.0 240840.0 424000.0 244590.0 False True 265264.11683315557 212660.2614352278 185378.58752467955 182993.62134567674 198051.8066630596 265764.0569947104 232682.11718109308 258812.7037607397 319510.88130891725 228980.05679596553 1.1584594769732337 0.9287283111503478 0.8095839878748156 0.7991683813264778 0.864930376183526 1.1606428119262873 1.0161676105636845 1.1302849138139432 1.3953655430945233 1.0 17.804862425534218 2.7367750344881987 24.9466953207322 1.136519247917855 0.9011162333912163 0.4083613131331152 0.13704493879237653 159.12400389270505 2223132.804501195 0.04433371070376864 0.04380054569060822 545.4752305080075 -2.7367750344881987 -0.2354030145266387 VDSEGDFS(ph)ENDDAAGDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 VDSEGDFSENDDAAGDFR 18 0 O43823;M0QYL4 O43823 AKAP8 A-kinase anchor protein 8 1 VDSEGDFS(1)ENDDAAGDFR;VDSEGDFS(1)ENDDAAGDFR;VDS(0.019)EGDFS(0.981)ENDDAAGDFR;VDSEGDFS(1)ENDDAAGDFR 472.97 7.409399999999991e-215 2147415000.0 1287471.0 1472803.0 1331422.0 1234976.0 1429350.0 1367680.0 1505225.0 1281437.0 1478000.0 1344596.0 True False 1280539.3991874745 1521824.357526787 1518874.6446725153 1391323.834975059 1611369.250078804 1273135.500772419 1432411.5162321008 1377064.3359452381 1113766.7041853298 1258782.732113447 1.0172838938118407 1.2089650729254153 1.2066217671435515 1.1052930736022097 1.2801011715289246 1.0114021016437635 1.137933878253269 1.093965067055854 0.8847966180115603 1.0 20.26359786242716 1.3878095831146884 4.271166581580797 0.9446419780894609 1.141009023240799 0.46097379134860295 0.08303026795432539 0.1779574756588701 5.123343677738878 0.057980596683143246 0.02014359104714008 24.423594627528253 -1.3878095831146884 0.19636704515133807 VDSFHESTEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDSFHESTEGK 11 0 Q8WWY3-4;Q8WWY3;E7EVX8;Q8WWY3-3;Q8WWY3-2 Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 0 122.69 0.00038551 272980000.0 312390.0 513630.0 563420.0 569660.0 568990.0 674260.0 727830.0 666200.0 688800.0 690990.0 False True 310708.1269497915 530725.8640541089 642744.6386655685 641778.897591444 641447.5038320486 627649.9932373144 692622.0823193943 715915.2268950554 519054.46944712807 646890.4266136986 0.48031028775037976 0.820426214733644 0.9935912052836643 0.9920983078246928 0.9915860205102397 0.9702570441842789 1.0706945934338354 1.106702460635696 0.8023839093805142 1.0 19.303161836780514 4.732444345417632 1.7338583535903707 1.00664523358059 0.3001071945455023 0.80605878862864 0.07617911643725377 0.3623159439293844 1.0886420687540437 0.020001558050691703 0.42249003544731717 54006.290158678734 -4.732444345417632 -0.7065380390350877 down VDSGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDSGYR 6 0 Q14697;F5H6X6;K7EKT3;Q14697-2;E9PKU7;Q92947-2;Q92947;K7EKH1 Q14697;Q14697-2;Q92947-2 GANAB;GCDH Neutral alpha-glucosidase AB;Glutaryl-CoA dehydrogenase, mitochondrial 0 ; 119.06 0.049635000000000006 871210000.0 402310.0 542360.0 531650.0 523980.0 522240.0 446610.0 579830.0 493990.0 620810.0 515800.0 False True 400144.00766084256 560412.1247364565 606501.69881536 590315.8142751204 588744.1684410075 415736.90190685674 551781.4077342987 530854.0422303936 467819.693927804 482881.2024014024 0.8286593175938473 1.160558998671904 1.2560060234260189 1.222486630954856 1.219231905307436 0.8609506848462266 1.142685623275975 1.099347084936044 0.9688090809940489 1.0 18.88130877781046 2.804396258590866 24.999975670982792 1.0376497018445139 1.1499933087740888 0.16256051528559512 0.1329938023405641 397.6977164697647 151017.91987359143 0.04135761438855745 0.04386636979103864 637.376810468989 -2.804396258590866 0.1123436069295749 VDSPLPSDKAPT(ph)PPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDSPLPSDKAPTPPGK 16 1 Q12893 Q12893 TMEM115 Transmembrane protein 115 1 VDSPLPSDKAPT(1)PPGK 139.17 4.2410000000000006e-06 239990000.0 944380.0 600250.0 593720.0 474830.0 575800.0 936280.0 813540.0 842330.0 1238700.0 777610.0 True False 939295.5630104812 620228.9583912127 677310.6152932487 534943.4293145833 649124.7169660161 871557.1673660511 774185.9621753994 905188.9418650729 933438.9827296142 727982.2640545841 1.2902725923279539 0.8519836114368687 0.9303943910953083 0.7348303052538012 0.8916765545229612 1.1972230786390448 1.0634681645449413 1.2434216965994682 1.2822276431993198 1.0 19.473543776684696 2.737956885817995 24.991566432656594 1.170154352790767 0.9230378096854033 0.3300572217086536 0.15341626184669735 57.610602798690486 2384759.882433529 0.047868984834402495 0.04764548005176806 546.9616610868841 -2.737956885817995 -0.24711654310536368 VDSPS(ph)HGLVTSSLCIPSPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 VDS(0.305)PS(0.695)HGLVTSSLCIPSPAR 269.85 7.3436e-38 701770000.0 412080.0 390600.0 323440.0 317600.0 369560.0 469810.0 391680.0 371030.0 512080.0 426850.0 True False 409861.4070663925 403600.88487731427 368977.54060912254 357808.1274357388 416621.2754462669 437333.14051378245 372732.94203709695 398718.1426521645 385884.745520449 399608.06755532924 1.0256584897642078 1.0099918336144007 0.9233485771856554 0.8953976570710679 1.042574735778031 1.0944051835320614 0.9327462889259331 0.9977730056637519 0.9656580455974401 1.0 18.608226183954972 4.461819312180212 24.919586536009 0.9817181379401696 1.0217418831110887 0.06778775324675612 0.055248185863987616 577.6934941466233 940789.2116839789 0.01413768244471273 0.03875293129690768 28961.384012919923 -4.461819312180212 0.04002374517091911 VDSSTNSSPSPQQSESLS(ph)PAHTSDFR ddPTM_BT-474_Trastuzumab_2h_R1 3 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 1 VDSSTNSSPSPQQSES(0.028)LS(0.972)PAHTSDFR;VDSSTNSSPSPQQSES(0.001)LS(0.999)PAHTSDFR;VDSSTNSSPSPQQSESLS(1)PAHTSDFR 336.15 2.3437999999999993e-95 903190000.0 177916.0 264275.0 287026.0 275438.0 300006.0 304431.0 301604.0 290524.0 311582.0 350400.0 True False 176958.120024326 273071.2336173891 327436.765925284 310308.42255870585 338209.9858251244 283386.40152349055 287014.262280833 312204.3761309798 234796.79108489415 328037.17200746696 0.5394453285321518 0.8324399090087672 0.9981697010783604 0.9459550594822298 1.0310111618003641 0.8638850279962783 0.8749443257433637 0.9517347507308508 0.7157627583728516 1.0 18.32349977962242 4.695693614801514 3.121601453322616 0.9225115709061417 0.4991815425982586 0.6402338565344834 0.08607679977192968 0.18439850353032589 2.8568108031884556 0.02032824477708234 0.18059966870276614 49624.21100449228 -4.695693614801514 -0.4233300283078831 VDST(ph)TCLFPVEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDSTTCLFPVEEK 13 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 VDST(0.95)T(0.05)CLFPVEEK;VDS(0.062)T(0.871)T(0.068)CLFPVEEK 340.11 7.9119e-62 4295300000.0 6842600.0 3094100.0 2548440.0 2955380.0 2559640.0 3937970.0 3319930.0 3590650.0 7047800.0 3850180.0 True False 6805760.201884337 3197085.2480770554 2907238.2005624287 3329530.804978063 2885594.981825098 3665747.4028842696 3159332.302535795 3858602.535951252 5310964.12568158 3604458.216095065 1.8881506717138317 0.886980804438526 0.8065673192106029 0.9237257322364391 0.800562750024397 1.0170037168181139 0.8765068460020872 1.0705083273600873 1.473443110525298 1.0 21.781350994478753 4.741867924547603 24.971130458880975 0.9736701799831595 1.8881510171324238 0.6842950083615966 0.18413621591193946 180.15676428112153 1360172.6757429414 0.044517646030627744 0.32243814367016965 55190.956979517076 -4.741867924547603 0.9144808371492643 VDTFPQPLAAPQCHTLLAPEMEDNEMSCS(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 1 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 VDTFPQPLAAPQCHTLLAPEMEDNEMS(0.182)CS(0.818)P 97.047 0.00043632 47591000.0 22340.0 24846.0 19514.0 25669.0 22360.0 23224.0 18304.0 15787.0 30205.0 27458.0 True False 22219.723922207348 25672.984090275848 22261.401581271388 28918.692768098146 25207.413461896675 21618.579543415577 17418.565591929702 16965.10610476167 22761.382476263785 25705.606932023496 0.8643921141782687 0.9987309056022713 0.8660134592480137 1.1249955250841348 0.9806192683392282 0.8410063843496965 0.6776173633243425 0.6599768739024366 0.8854637253442221 1.0 14.6497954553406 2.574122119848474 3.8525795592961845 0.7608658612075183 0.9710180939848088 0.27286942056175345 0.11723764997752542 0.23255307918307735 6.252861294396392 0.039224892159308536 0.03616405812883492 375.07845623312346 -2.574122119848474 0.21015223277729045 VDVADQAQDKDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDVADQAQDKDR 12 1 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 107.14 0.0016837 174550000.0 298110.0 237110.0 195630.0 183010.0 200320.0 271590.0 235320.0 242680.0 320630.0 257170.0 False True 296505.0088831346 245002.06301397845 223173.00355355715 206179.04723556215 225829.5646103372 252815.6225540924 223936.67259030236 260790.01390407066 241615.0327218827 240757.1904256861 1.2315520394588424 1.0176313429342938 0.9269629835726272 0.8563775265486947 0.9379971755404058 1.0500854496062428 0.9301349305262985 1.0832075812272284 1.0035631014578623 1.0 17.87721936050791 2.724018079784623 24.653912820334693 1.016899692002899 0.9840297211169409 0.0036955711152339976 0.09877078446768921 3519.908953883835 5967281.970660866 0.03357949452065281 0.03178905020180718 529.685494368281 -2.724018079784623 -0.03286997088595811 VDVADQAQDKDRDDR ddPTM_BT-474_Trastuzumab_2h_R1 7 VDVADQAQDKDRDDR 15 2 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;;;;;; 211.78 6.7959e-10 21161810000.0 14674300.0 11615840.0 10545850.0 9291650.0 9932800.0 13326050.0 13157940.0 12937940.0 17632620.0 12879910.0 False True 14595295.199268015 12002466.212476427 12030614.01382858 10467971.93730565 11197683.203681914 12404851.529647488 12521440.173987951 13903434.780328145 13287297.066002943 12057903.116754264 1.210433941784462 0.9954024423864537 0.9977368284799232 0.8681419842195092 0.9286592449165487 1.0287735279951906 1.0384425926087937 1.153055771447487 1.1019575242349107 1.0 23.52347570693176 2.0971568096685633 2.8960017928520068 1.1005273560968605 0.9934873836893764 0.11919952670018885 0.0902652045492708 0.4256632691490765 7.071514909125541 0.04206210920663533 0.027077935413183804 125.07105397595589 -2.0971568096685633 -0.10703997240748409 VDVEVPDVS(ph)LEGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDVEVPDVSLEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VDVEVPDVS(1)LEGPEGK 170.11 5.6511e-09 43100000.0 75820.0 66291.0 44974.0 55159.0 43838.0 67932.0 54700.0 51722.0 91796.0 65853.0 True False 75411.79354439396 68497.45586124425 51305.94827898424 62142.12374442031 49420.50945181694 63236.02073472737 52053.95202570775 55581.758278994304 69174.10580338057 61650.20516041015 1.2232204799347703 1.1110661462199187 0.8322105035253203 1.0079791881102458 0.8016276559539053 1.0257227947610397 0.8443435328441564 0.9015664771005042 1.1220417778561107 1.0 15.911818075206174 4.419274165022104 5.036007169122489 0.9325676513274367 1.1995958241817306 0.48304164312846043 0.09579414920285349 0.1282875434849385 6.542191318494141 0.021877245140196774 0.06586902438241972 26258.757048472173 -4.419274165022104 0.2670281728542939 VDVFREDLCTK ddPTM_BT-474_Trastuzumab_2h_R1 4 VDVFREDLCTK 11 1 Q06323;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 ;;; 177.1 7.4147e-06 2126890000.0 2590010.0 3214630.0 3050480.0 3240120.0 2896830.0 3531520.0 3783360.0 3206250.0 5415920.0 4064130.0 False True 2576065.6739371642 3321627.0162651255 3479961.068752522 3650318.8597830096 3265724.129643385 3287394.3347038846 3600344.422961277 3445516.6560076117 4081239.0856098845 3804753.74392325 0.6770650211072186 0.8730202372677209 0.9146350336892448 0.9594100184836152 0.8583273319223945 0.8640228924025203 0.9462752822601345 0.9055820397077228 1.072668393356133 1.0 21.85937165014428 4.854979899482722 1.7786350073435053 0.9320070254032143 0.5347080242736234 0.6320902393064016 0.0602555440568291 0.8105721908338683 2.032665140780512 0.015323903138699737 0.5944616393122361 71611.0265606015 -4.854979899482722 -0.39729900112959093 VDVGKDQEFTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDVGKDQEFTVK 12 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 196.11 1.9189e-07 547080000.0 640270.0 554850.0 517610.0 466790.0 473210.0 729100.0 702320.0 678540.0 1006800.0 690180.0 False True 636822.8574606852 573317.8468360924 590484.9888532278 525885.5661389426 533470.4885645855 678699.0331167881 668346.0984770582 729176.1003563042 758687.6304288167 646132.1215071741 0.9855923212348985 0.8873074526905822 0.9138765419615059 0.8138978834735174 0.8256368485755002 1.0504028673480095 1.034379929785982 1.1285247646494048 1.1741989063461116 1.0 19.301469672720923 2.603309051742147 4.1787909067882625 1.0913985649319353 0.8835012937147436 0.6987557734686345 0.06317364463365581 0.13043480558069923 3.8101203155591348 0.021875531807285166 0.02040523356177655 401.15208309643344 -2.603309051742147 -0.2078972712171917 VDVKS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 6 VDVKSPK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK 75.294 0.026562 7457420000.0 10759500.0 7030000.0 6405290.0 6102360.0 5261520.0 8690350.0 9245550.0 7979010.0 14623900.0 8408160.0 True False 10701572.047492843 7263989.300275261 7307099.156221265 6874918.150310928 5931543.384527671 8089606.559383458 8798307.425069148 8574444.242791824 11020035.79522047 7871544.030212052 1.35952641647163 0.9228163207110429 0.9282929915878801 0.8733887689535955 0.753542552993619 1.027702637288752 1.1177359094099013 1.0892963578532935 1.3999840124026595 1.0 22.90821522236868 2.240181385357422 2.675174118259789 1.1598102705953588 0.953510531011822 0.19755125914430316 0.17402763056183546 0.42705635469298464 6.277432836990487 0.07379290093489577 0.05278798651580123 173.85267819254895 -2.240181385357422 -0.20629973958353676 VDVNAPDVQAPDWHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VDVNAPDVQAPDWHLK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 258.61 1.0308e-26 1656730000.0 1463780.0 1504330.0 1506360.0 1399780.0 1246200.0 1791710.0 1696820.0 1558280.0 1989770.0 1742240.0 False True 1455899.1711212469 1554400.71466331 1718442.3944841647 1576992.0044773233 1404896.1831939013 1667853.3049316711 1614738.3341181236 1674566.766385508 1499417.8450519936 1631048.7515932906 0.8926153615574343 0.9530069000971878 1.0535812573385703 0.9668576754292831 0.8613453042537986 1.0225649621462436 0.9900000429421658 1.0266810018705492 0.9192967675474364 1.0 20.637368473771726 VDVRPATR ddPTM_BT-474_Trastuzumab_2h_R1 2 VDVRPATR 8 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 ; 60.118 0.086017 338380000.0 934400.0 1162130.0 1264640.0 941860.0 579630.0 796390.0 1090450.0 742700.0 1696320.0 970620.0 False True 929369.2942216002 1200810.7945275805 1442690.3195520684 1061099.3794289185 653442.4447638268 741337.4338004105 1037700.7675764711 798124.0453541839 1278284.6655234501 908674.2006104101 1.0227750425810351 1.3214976211726106 1.5876871144607474 1.1677445873516772 0.7191163172948797 0.8158451437296342 1.1419943109195643 0.8783390623592447 1.4067579608453182 1.0 19.793403592380276 3.473700594370002 24.967642488298647 0.979070954241735 1.322734071457769 0.3001158569423885 0.21781672940019225 110.0352355776693 803149.0928550824 0.05983770830786982 0.08141242389507101 2976.4637271855586 -3.473700594370002 0.34366311721603393 VDVRPLPAS(ph)PARPCPSPGPAAASSPARPPGLQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VDVRPLPASPARPCPSPGPAAASSPARPPGLQR 33 3 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 VDVRPLPAS(0.988)PARPCPS(0.012)PGPAAASSPARPPGLQR 143.88 2.1578e-09 1060000000.0 79140.0 75399.0 63940.0 56819.0 60532.0 63277.0 62037.0 86566.0 78663.0 70101.0 True False 78713.9190332806 77908.6101353421 72942.19622355701 64012.27957421669 68240.39139872673 58902.809928036026 59036.03330564596 93025.9944932413 59277.55768019667 65627.0941635145 1.1994119202834026 1.187140938180614 1.1114646649113615 0.9753940866972659 1.0398204014442727 0.8975379860835457 0.8995679918198656 1.4174937299747041 0.9032482458007737 1.0 16.00200393441348 4.082874765361143 3.501864479037585 1.0469141130174366 1.1936854570017212 0.17354831472198717 0.1448352635474148 0.5018555678084087 12.126140589519915 0.040584783000724274 0.09780853310774237 12102.490916693268 -4.082874765361143 0.1467713439842846 VDVRPLPASPARPCPS(ph)PGPAAASSPARPPGLQR ddPTM_BT-474_Trastuzumab_2h_R1 3 VDVRPLPASPARPCPSPGPAAASSPARPPGLQR 33 3 Q9BQ89;V9GZ26 Q9BQ89 FAM110A Protein FAM110A 1 VDVRPLPAS(0.221)PARPCPS(0.774)PGPAAAS(0.002)S(0.002)PARPPGLQR;VDVRPLPAS(0.08)PARPCPS(0.92)PGPAAASSPARPPGLQR;VDVRPLPAS(0.179)PARPCPS(0.812)PGPAAAS(0.008)S(0.002)PARPPGLQR 88.56299999999997 0.00024075 1829070000.0 269349.0 285989.0 285104.0 259166.0 259688.0 253282.0 285555.0 228001.0 281271.0 291340.0 True False 267898.854911487 295507.9709809985 325244.1650316076 291976.3890271117 292757.7275086327 235773.2115016962 271741.6137239665 245015.59238561866 211955.53088830286 272746.4317712773 0.9822268000783402 1.0834531145353674 1.1924781670630782 1.0705048903149739 1.0733695968354104 0.8644410486712197 0.996315925965428 0.8983273980687181 0.7771156876803685 1.0 18.057200796926825 2.7749247590060264 8.318047941976117 0.9083028860773715 1.0865653876387238 0.5634725357806778 0.07611140996392761 0.24005963211673784 51.15246202167005 0.023377310818541774 0.024629168769369075 595.5589547216629 -2.7749247590060264 0.17826250156135226 VDVSAPDVEAHGPEWNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VDVSAPDVEAHGPEWNLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 296.47 2.4166999999999997e-49 1544100000.0 2009320.0 1899410.0 1972860.0 1639600.0 1738420.0 2579700.0 2283800.0 2076900.0 2847600.0 2384600.0 False True 1998502.0443764387 1962630.7136324078 2250621.5395934726 1847173.1918880257 1959797.482577391 2401371.410960608 2173323.869036773 2231888.824284506 2145847.135885078 2232412.7864412274 0.8952206583453257 0.8791522452982858 1.0081565350560782 0.8274335298144719 0.8778831112598926 1.0756843114076247 0.9735313658104199 0.9997652933364727 0.9612232777549411 1.0 21.090172384076514 2.7600704023089295 24.938449477771783 0.9994623956885316 0.8987933576441012 0.5133006072112418 0.05082629324800939 663.4580963369194 769212.2893677921 0.015321817647357532 0.016238128282950626 575.5332279171078 -2.7600704023089295 -0.10066903804443039 VDWLTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDWLTEK 7 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3QL52;Q14240;Q14240-2;E7EQG2;P38919;I3L3H2;J3KTN0 P60842;Q14240;P38919;J3KTN0 EIF4A1;EIF4A2;EIF4A3 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed 0 96.253 0.029935000000000007 30684000.0 63338.0 77208.0 70724.0 71341.0 68690.0 73740.0 71059.0 59693.0 88839.0 80710.0 False True 62996.995245513346 79777.82160677835 80681.32445597205 80372.7632852424 77437.2643424724 68642.52736528878 67621.60469825898 64147.59477491214 66945.81883161071 75559.01870069258 0.833745545254625 1.0558345380688103 1.0677921159295378 1.063708405261564 1.0248579941094786 0.9084623986078791 0.8949508061522661 0.8489733704591396 0.8860069913930351 1.0 16.20531634484326 2.6910405982842054 4.636439831591804 0.8917367551997972 1.0183313132685863 0.31094670459240425 0.07329787320731547 0.21426421776656293 10.414614890360893 0.023843859818171248 0.022851513844748008 490.95376885875817 -2.6910405982842054 0.12659455806878905 VDYIMQLPVPMDAALNKEELLEYEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VDYIMQLPVPMDAALNKEELLEYEEK 26 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 83.881 0.013045 200540000.0 35525.0 26377.0 27810.0 23255.0 31387.0 35525.0 35314.0 31473.0 49137.0 33965.0 False True 35333.737347198556 27254.942499766803 31725.406271146698 26199.080615611136 35383.94840467581 33069.24036685494 33605.72690741944 33821.675076655716 37027.84475206667 31797.324621100503 1.1112173042304103 0.857145776399081 0.9977382263819113 0.8239397788273544 1.1127964011536757 1.040000715812122 1.0568727812125078 1.063664175514058 1.1644956043721748 1.0 14.956617763982248 3.212843919339919 24.999999773674677 1.0726345336845147 0.9446432780607947 0.3519030546270846 0.08337401129992125 226.91090026346532 220586.53875112365 0.022372733815823435 0.026749324793872684 1632.4651524360947 -3.212843919339919 -0.12799125562371994 VEADIPGHGQEVLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEADIPGHGQEVLIR 15 0 B0QYF8;P02144;F2Z2F1;F2Z337 B0QYF8 MB Myoglobin 0 ;; 201.3 6.4807000000000006e-09 844490000.0 1536670.0 1720390.0 1611260.0 1482140.0 1548490.0 1790270.0 1676380.0 1562330.0 1781960.0 1748500.0 False True 1528396.7394600867 1777652.141152282 1838111.4026770156 1669778.7720327603 1745681.0228806983 1666512.848742277 1595287.0950065095 1678918.9979509916 1342819.835040657 1636909.2330338361 0.933708912269599 1.085980887197755 1.122915898806602 1.0200802453401794 1.0664494937482059 1.0180850685615437 0.9745727269494445 1.0256640771946133 0.8203386039627159 1.0 20.642542895606326 1.8022284323689974 1.2636905124828133 0.9299432015208264 1.048443669612918 0.2966869883415266 0.06769895942694186 0.5283957600582208 1.5768082118042641 0.052551559964828305 0.02128544536428691 63.420320489510345 -1.8022284323689974 0.11850046809209158 VEADRPGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VEADRPGK 8 1 P38159;P38159-2;H3BT71;H3BR27;P38159-3;H3BNC1;O75526;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA binding motif protein, X-linked-like-1 0 ;; 133.86 0.00082194 1510090000.0 1494200.0 1697350.0 1602800.0 1508850.0 1648000.0 1740040.0 1651980.0 1786160.0 2376190.0 1804060.0 False True 1486155.393221228 1753845.2686802598 1828460.308212655 1699870.2552941237 1857863.0315387177 1619755.1304135732 1572067.4162235581 1919452.3291367027 1790609.8138147106 1688923.3462665281 0.879942477263085 1.038439827690964 1.0826188839502882 1.0064815902105886 1.1000280359944348 0.9590459709104883 0.9308104004238633 1.1364946392503683 1.0602078642426056 1.0 20.687672420571413 4.73844874062498 9.752221622520416 1.0390857124071018 0.8794949646687537 0.37170569228714456 0.06021994062140181 0.08002100897852724 224.36847719674515 0.014666768666550502 0.08494666692072361 54758.14666148176 -4.73844874062498 -0.15959074773834814 VEADS(ph)WRK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEADSWRK 8 1 Q9NXZ2 Q9NXZ2 DDX43 Probable ATP-dependent RNA helicase DDX43 1 VEADS(1)WRK 42.109 0.096344 181740000.0 89430.0 444580.0 538550.0 594830.0 670890.0 300230.0 251260.0 149650.0 36934.0 156270.0 True False 88948.51881660715 459377.5765457142 614373.1588394843 670135.4170107058 756323.8648234282 279475.80676540034 239105.59389358942 160817.64290730236 27832.110590244218 146296.71481052187 0.6080007943569341 3.1400402745932006 4.199500717669552 4.580659366675736 5.169793906876112 1.9103354926825742 1.6343879915777344 1.0992566929174552 0.1902442623287293 1.0 17.158537847605743 2.5128155756744337 4.610215314751656 1.0832846202404336 3.6202349014244164 0.5081873605258895 1.1893732212621146 0.181389923899962 9.091668994898995 0.4293118084940785 0.3875655771323175 325.6983629411402 -2.5128155756744337 2.536950281183983 VEAEAGGSGART(ph)PPLSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEAEAGGSGARTPPLSR 17 1 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 VEAEAGGSGART(1)PPLSR;VEAEAGGSGART(1)PPLSR;VEAEAGGS(0.068)GART(0.931)PPLSR;VEAEAGGS(0.011)GART(0.989)PPLSR 166.28 3.8249e-09 3948550000.0 866260.0 1197840.0 1077460.0 1256510.0 1145530.0 1125880.0 1254000.0 964620.0 1256880.0 1206520.0 True False 861596.1524105344 1237709.3802904289 1229157.0025497915 1415584.037167127 1291406.4554117394 1048050.5656364419 1193339.2292547987 1036604.842641111 947138.765329133 1129518.8606462593 0.7627992611983198 1.095784606537927 1.0882129067296173 1.2532628595127613 1.1433243838645204 0.9278734531593347 1.0565022602385092 0.9177401801400756 0.8385329349766 1.0 20.10727693030187 2.0222472972685717 1.4726368594201305 0.911515034611289 1.0710665990618857 0.15520563063863968 0.12947339160624524 0.688086397020779 2.78876517215947 0.0883423863043461 0.042951518495161635 105.25610556914476 -2.0222472972685717 0.1595515644505967 VEAFEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEAFEHR 7 0 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 ;;; 154.35 0.0016844999999999998 1227640000.0 1822100.0 2374350.0 2120850.0 2379270.0 2172640.0 2060060.0 2038840.0 1829010.0 2364900.0 2118640.0 False True 1812290.0160543397 2453378.8044251185 2419447.2452413365 2680485.338047953 2449312.825753809 1917652.9010596247 1940213.5200748437 1965500.0137245946 1782102.0830364581 1983426.5813410417 0.9137167128359284 1.2369395608111347 1.2198320159677858 1.3514416733467458 1.2348895839127911 0.9668383589792642 0.9782129262193408 0.9909618194164129 0.8984966218570776 1.0 20.919563564893807 2.7343481936017926 24.691665119838795 0.9693473833697567 1.204370664791555 0.5213180374708883 0.10716915919766355 241.55258773089372 1415887.170017961 0.03454387268207214 0.03365318440230088 542.4356113651328 -2.7343481936017926 0.2350232814217984 VEAIDVEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEAIDVEEAKR 11 1 A0A3B3IS57;A0A3B3IT92;P33991;A0A3B3IU45;E5RG31 A0A3B3IS57 MCM4 DNA replication licensing factor MCM4 0 87.641 0.021764 275270000.0 420450.0 393770.0 314290.0 317170.0 317740.0 459550.0 446830.0 404660.0 543140.0 425270.0 False True 418186.3439163863 406876.3964110084 358539.3001423483 357323.68947982753 358202.3056074707 427782.39016434 425215.1258436381 434857.78402184485 409290.42470312625 398128.9045080349 1.0503792595343868 1.0219715067253976 0.900560838669558 0.8975075294303737 0.899714392880112 1.0744821220477516 1.0680337976693088 1.0922537376661854 1.0280349406152351 1.0 18.602876090595093 2.7252533294979018 24.575755078684676 1.062283276060898 0.9516911363191799 0.44993763188029445 0.05390982900742272 565.0289867281842 1043487.9696101397 0.018848634781206266 0.017870375588891603 531.1942062183414 -2.7252533294979018 -0.11059213974171811 VEAKPEVQSQPPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEAKPEVQSQPPR 13 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ;;; 183.96 9.0372e-06 4406660000.0 3426700.0 3356960.0 2925340.0 2968230.0 3186780.0 3788460.0 3573570.0 3517860.0 4574690.0 3826060.0 False True 3408251.0279421574 3468694.3842748287 3337202.4444888993 3344007.613660522 3592597.5434750896 3526572.6772755836 3400702.766736905 3780380.576531124 3447318.947205402 3581877.575145231 0.9515263870524571 0.9684011559591583 0.9316908170301127 0.9335907058534616 1.002992834932228 0.984559802307759 0.9494190394262763 1.05541870072928 0.9624334932959362 1.0 21.77228459767284 3.234124398322005 24.993426385504012 0.9959866738313763 0.9468370813069986 0.3890792509776153 0.02813213385038073 111.69070136146901 629259.7221470226 0.008244669063105933 0.010179128238535175 1714.448319853795 -3.234124398322005 -0.04914959252437767 VEAMNKR ddPTM_BT-474_Trastuzumab_2h_R1 5 VEAMNKR 7 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;;; 113.89 0.0096659 1989210000.0 1164526.0 1437400.0 1282203.0 1226390.0 1083303.0 1226245.0 1390050.0 1269820.0 2097100.0 1435470.0 False True 1158256.3214070012 1485242.9900733498 1462726.0372917354 1381650.8482554 1221255.2158100663 1141477.5694202401 1322807.9709933286 1364580.4164153084 1580297.804700308 1343857.0756323016 0.8618895137059327 1.1052090412029303 1.0884535742787265 1.0281233572441593 0.9087686763381816 0.8494039954979294 0.9843367981456889 1.0154207922544563 1.1759418716136596 1.0 20.357948279434154 1.4496914089386306 5.521071858321339 1.091807782476355 0.9808756720319398 0.1932801013083283 0.09034086926727393 0.30023672322027717 19.036390719067086 0.06036521325646333 0.02392612045348962 28.163810203633318 -1.4496914089386306 -0.1109321104444152 VEAPSLDVHMDS(ph)PDINIEGPDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEAPSLDVHMDSPDINIEGPDVK 23 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VEAPSLDVHMDS(1)PDINIEGPDVK 243.97 1.304e-37 121430000.0 168270.0 138080.0 142060.0 133760.0 125530.0 198290.0 183750.0 146850.0 268050.0 193400.0 True False 167364.05301655468 142675.90932887752 162060.8131923445 150694.00228527805 141515.50142539758 184582.679024452 174861.3105068335 157808.6926891904 201992.66918597932 181057.04642192952 0.9243719387012139 0.788016330479567 0.895081502736343 0.8323012291612534 0.7816072570609288 1.0194724959464236 0.9657802000113397 0.8715965261105502 1.1156299805933103 1.0 17.466084799498088 2.7340528714223282 24.99922241529508 0.9747277361181697 0.8433074347418716 0.5241047999369137 0.07031891561416295 350.52697457923995 1943957.8967220136 0.02230779039652998 0.02169092881944866 542.0668781209474 -2.7340528714223282 -0.131420301376298 VEAPSLDVHMDSPDINIEGPDVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEAPSLDVHMDSPDINIEGPDVK 23 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 239.56 3.1946e-37 248050000.0 117370.0 114440.0 121380.0 90939.0 93900.0 129220.0 129120.0 103860.0 162790.0 133420.0 False True 116738.09296103293 118249.06621955901 138469.2489461267 102451.86807581436 105857.60841109563 120287.32555116087 122873.97231369997 111610.56059039384 122672.58577424209 124905.02137339118 0.9346148911984569 0.9467118689012922 1.1085963352280819 0.8202381853772288 0.8475048260441412 0.9630303428040241 0.9837392521344711 0.893563440149817 0.9821269347332687 1.0 16.93047195110143 3.3236030638467025 0.002091950620247415 1.8830489400254111 1.874684696840423e-05 0.009635741807331955 0.07755280829193577 1175133.7964195085 669.4773485985188 298747.9832509866 303870.7226094233 2106.701787978811 -3.3236030638467025 -1.8830301931784428 VEAVNMAEGIIHDTETK ddPTM_BT-474_Trastuzumab_2h_R1 6 VEAVNMAEGIIHDTETK 17 0 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ;;;;; 280.65 6.242799999999999e-36 565252000.0 700575.0 671621.0 712027.0 533960.0 770347.0 1335061.0 670656.0 684546.0 1103673.0 883270.0 False True 696803.1820412003 693975.4989815312 812274.2125503694 601559.2812518484 868446.1242456043 1242771.3754655498 638213.8071252843 735630.2985741548 831687.5776105119 826898.9523945077 0.8426702924503893 0.8392506689867475 0.9823137521195444 0.727488261425259 1.0502445573679657 1.5029301607732988 0.7718159580165933 0.8896253846300567 1.0057910645576917 1.0 19.65735151630466 4.238245408598861 22.695240575312596 0.9817692719466077 0.8409604359061459 0.08241680312629829 0.19860584352698923 7.143596795348788 515055.3592879681 0.05135627011049024 0.12319955514158425 17307.941100031534 -4.238245408598861 -0.1408088360404618 VECTYISIDQVPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VECTYISIDQVPR 13 0 Q12765;Q12765-2;C9K052;B8ZZP4;C9J7U9 Q12765 SCRN1 Secernin-1 0 163.12 9.1398e-05 147000000.0 89175.0 118550.0 121200.0 105600.0 95263.0 116320.0 122890.0 117820.0 150200.0 122710.0 False True 88694.89170827388 122495.86508501162 138263.90651071502 118968.94917258804 107394.17838196162 108279.07218782739 116945.34121461114 126612.32667783744 113185.22257688528 114878.54274268346 0.7720753553336904 1.0663076163787193 1.2035659855157848 1.0356063572208316 0.9348497623486914 0.9425526264757882 1.017991161992341 1.1021407797750054 0.985259909071174 1.0 16.809749827951027 4.742492317465487 24.381394927662438 1.0371687096799882 0.7720752076706153 0.5168728281853086 0.075250335839356 239.0554978379975 1482353.9281215288 0.01948348654751707 0.1469932143502038 55270.363070237436 -4.742492317465487 -0.26509350200937287 VECVGDDIAWMR ddPTM_BT-474_Trastuzumab_2h_R1 2 VECVGDDIAWMR 12 0 Q16822;Q16822-3;H0YML5;H0YM31;Q16822-2 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 ; 123.86 0.00077516 85025000.0 89266.0 110169.0 110470.0 103431.0 118340.0 172139.0 99702.0 92765.0 128948.0 125661.0 False True 88785.40177438498 113835.90856643309 126023.21577754681 116525.35399498057 133409.89754386648 160239.43610161968 94879.03336137332 99687.59535112543 97170.49321467518 117641.2073962054 0.7547134523650666 0.9676533511173819 1.0712506150426655 0.9905147743216649 1.1340405330468388 1.362102953958532 0.8065118971605668 0.8473867070692861 0.825990274712273 1.0 16.844033970775268 VECYDYDNDGSHDLIGTFQTTMTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VECYDYDNDGSHDLIGTFQTTMTK 24 0 O75131;H0YB26 O75131 CPNE3 Copine-3 0 ; 255.94 7.494499999999997e-44 589150000.0 175554.0 189861.0 210789.0 160965.0 169827.0 360970.0 193910.0 193698.0 364710.0 251040.0 False True 174608.83676988308 196180.40861160203 240466.2589891676 181343.1524958868 191453.4618065083 336016.99353198125 184529.83249186442 208152.72833851457 274832.10736362106 235018.4122738429 0.7429581158365979 0.8347448470676122 1.02318051025286 0.7716125334239183 0.8146317556746455 1.4297475260808716 0.7851718114615237 0.8856868971439374 1.1694067060728304 1.0 17.842414262101983 VEDLAWHR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEDLAWHR 8 0 Q9NZU5;B4DEY6;Q9NZU5-2 Q9NZU5 LMCD1 LIM and cysteine-rich domains protein 1 0 ;; 117.04 0.0021563000000000003 484990000.0 595530.0 721260.0 635740.0 682960.0 687110.0 791720.0 785120.0 702130.0 901490.0 844680.0 False True 592323.7326496037 745266.7030891228 725246.6660488604 769422.6659745339 774609.3856799566 736990.2599084128 747140.7461503412 754526.5059438967 679329.8688471124 790771.7992330699 0.7490450888917245 0.9424548318641608 0.9171377466321396 0.9730021565270266 0.9795612165623656 0.9319885466618598 0.9448247229794433 0.9541646612533152 0.859071946553937 1.0 19.592901896550906 4.739012925314814 7.042511535144336 0.9446072982173543 0.7462008355631559 0.7197031430365486 0.036630918408905803 0.053889542184003596 20.785368994071913 0.008268275490232067 0.05068198646100086 54829.32827837978 -4.739012925314814 -0.19840646265419848 VEDMAELTCLNEASVLHNLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VEDMAELTCLNEASVLHNLK 20 0 P35579;Q5BKV1;B1AH99;P35580;P35580-5;P35580-2;P35580-3;P35580-4;E7ERA5 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ;;; 314.1 2.2796999999999997e-66 2620430000.0 2625980.0 2603220.0 2295050.0 2323270.0 2281210.0 3029650.0 2890310.0 2799990.0 3627200.0 3018880.0 False True 2611842.0154538075 2689866.6040202817 2618173.09106779 2617395.743789757 2571708.5717090047 2820217.42652898 2750494.663243571 3008939.471861125 2733325.1619898723 2826212.493806799 0.9241492000963301 0.9517566743175547 0.9263893273436111 0.9261142782170021 0.9099487661824793 0.9978787627289327 0.9732087269696982 1.0646543663842487 0.9671336348485917 1.0 21.430438510663482 2.6382631824147826 4.35287082547159 1.0089264277689256 0.9289407986838235 0.6429378818174886 0.02684239044510997 0.13848307538041088 4.48954416534676 0.00903415574850594 0.00849979233969052 434.7736171261404 -2.6382631824147826 -0.0799856290851021 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPT(ph)PPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGK 36 2 Q12893 Q12893 TMEM115 Transmembrane protein 115 1 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPT(1)PPGK 168.15 4.6401e-16 125180000.0 187380.0 122450.0 123250.0 117500.0 121930.0 192630.0 171200.0 166990.0 322150.0 186440.0 True False 186371.16689987498 126525.674227412 140602.52869179533 132375.48795245355 137457.0627642694 179313.94150224523 162918.40195248922 179451.6417580381 242760.44908883882 174541.23958068565 1.067777261967483 0.7249041804181907 0.8055547733565775 0.7584195475548916 0.7875334396300465 1.027344265074692 0.9334092180385627 1.0281331918413614 1.3908486594459948 1.0 17.41320842267283 1.9417778483215007 1.1909599237829553 1.17037991667764 0.8282319309942628 0.46312657118062794 0.13856964054442694 0.396011016002733 1.036423819620816 0.10338771086386234 0.04607592400909158 87.45363152292278 -1.9417778483215007 -0.34214798568337723 VEDVEALDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEDVEALDR 9 0 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ;; 188.98 9.0136e-05 3353010000.0 2813130.0 3276090.0 2759870.0 2945680.0 3041080.0 3053910.0 3169370.0 2952760.0 3438830.0 3070660.0 False True 2797984.4206481245 3385132.6752117714 3148435.706779921 3318602.7859726287 3428343.512106652 2842800.3898308803 3016055.464930849 3173109.945011467 2591376.424461189 2874687.8498757132 0.9733176493472483 1.1775653051715258 1.0952269850502354 1.1544219613674258 1.1925967935109463 0.9889075051935773 1.0491766836741068 1.1038102607031426 0.9014461951314913 1.0 21.454973877768822 2.726151430621949 24.98688688284906 1.0257395887150056 1.1225889096776176 0.33845384217378094 0.07488641070298531 1001.9402440228037 2017482.0790181959 0.023796767764559624 0.022589879288836885 532.2938281321401 -2.726151430621949 0.096849320962612 VEDVEALDRK ddPTM_BT-474_Trastuzumab_2h_R1 6 VEDVEALDRK 10 1 P11216;H0Y4Z6 P11216 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase 0 ;;;;; 183.33 2.6934e-06 4417560000.0 5780100.0 5721630.0 4998350.0 5007950.0 5156080.0 6463620.0 6472510.0 6029090.0 8754380.0 6459030.0 False True 5748980.583829488 5912070.995751628 5702074.233562969 5641955.956523325 5812676.225519512 6016805.163124869 6159409.963910671 6479011.310898679 6596980.351681978 6046809.175546203 0.9507461566802606 0.9777174744757173 0.9429889497129542 0.9330468008383433 0.9612799175185577 0.9950380421226664 1.018621521714268 1.071476066600603 1.090985370988837 1.0 22.527742620640893 2.2823722526390755 1.6676264271282464 1.060470844264938 0.9526745961431718 0.7530734184925449 0.025130289800924927 0.1640024132044293 0.9150800058930084 0.012720466058101605 0.00819763355100055 191.5897420208043 -2.2823722526390755 -0.10779624812176614 VEEAS(ph)PGRPSSVDTLLSPTALIDSILR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEEASPGRPSSVDTLLSPTALIDSILR 27 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 VEEAS(0.92)PGRPS(0.038)S(0.038)VDT(0.003)LLSPTALIDSILR;VEEAS(0.936)PGRPS(0.031)S(0.031)VDT(0.001)LLSPTALIDSILR;VEEAS(0.632)PGRPS(0.065)S(0.296)VDT(0.007)LLSPTALIDSILR 119.47 0.00014898 2642990000.0 48791.8 43932.7 46703.6 39532.9 45197.4 50754.6 48481.3 37804.1 62936.5 49005.4 True False 48529.11037007859 45394.973361622055 53279.060925031554 44537.76108660045 50953.02098402188 47246.053965477135 46136.074302448746 40625.23390733014 47426.64288089311 45877.83341636624 1.057789933749717 0.9894750902824472 1.161324695556025 0.9707904181611214 1.1106239591045106 1.0298231291066766 1.005628881463055 0.8855089894641296 1.0337594291009906 1.0 15.485509641145796 2.1378133935276256 3.313735772997982 0.9581193375250293 1.0549230799569238 0.23697576401324072 0.06283643732311721 0.27282041372675364 5.913346326909543 0.024737083537075908 0.01711495134685445 137.34517072133752 -2.1378133935276256 0.09680374243189449 VEEEDDAEHVLALTMLCLTEGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VEEEDDAEHVLALTMLCLTEGAK 23 0 O75607 O75607 NPM3 Nucleoplasmin-3 0 ;;; 195.39 2.0239e-19 248857000.0 215961.0 174613.0 153323.0 138564.0 111751.0 195261.0 173601.0 181602.0 271516.0 183178.0 False True 214798.28997152258 180424.88814921235 174909.5456925935 156106.18819271287 125981.82744992898 181763.06666495296 165203.25640977887 195154.06339627097 204604.51992800005 171487.42321342402 1.2525600183763692 1.0521173201411118 1.0199555303534447 0.910306920866328 0.7346417894048054 1.0599206825723915 0.9633549406371089 1.1380080226256168 1.1931167667809683 1.0 17.387743248310354 0.019908347198942633 9.587726626677261 1.0000000059817125 1.0288594632267725 0.0036078777717227783 0.13979642442241125 0.0 0.0 0.14105477830082525 0.03324693008509288 1.0469075870617741 -0.019908347198942633 0.028859457245060005 VEEEDDAEHVLALTMLCLTEGAKDECNVVEVVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEEEDDAEHVLALTMLCLTEGAKDECNVVEVVAR 34 1 O75607 O75607 NPM3 Nucleoplasmin-3 0 ; 289.41 7.252999999999995e-90 303050000.0 193424.0 193569.0 164623.0 166250.0 118473.0 212127.0 205724.0 201378.0 332400.0 216710.0 False True 192382.62667542684 200011.82715006865 187800.4874712327 187297.2329540033 133559.83430551377 197463.15978324667 195772.344178002 216405.84893676438 250484.47393180238 202879.38226523445 0.9482611023722229 0.9858657144794689 0.925675568282792 0.9231950081016127 0.6583213770382259 0.9733032384980999 0.964969145667345 1.0666724559218448 1.234647262501674 1.0 17.630262732261393 1.8172542764183328 2.0373604252412836 1.1221944798918413 0.8984181877756697 0.4362287185876159 0.10138013002221441 0.28786562747284317 2.295868654123325 0.06716103992840336 0.030040027624506496 65.65295473085527 -1.8172542764183328 -0.22377629211617156 VEEEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 VEEEEER 7 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 ;; 176.65 0.0017308 5546020000.0 6801000.0 7223460.0 6640930.0 6086820.0 6228590.0 6480740.0 7340840.0 6370890.0 8023780.0 7246440.0 False True 6764384.171662127 7463888.499426213 7575915.220001674 6857410.787904278 7021764.016754704 6032741.697821007 6985735.524467948 6846318.162523921 6046426.932143549 6783965.995210581 0.9971135138999401 1.1002249281166283 1.116738383616634 1.0108262324347659 1.0350529501049983 0.8892647312914109 1.02974211978654 1.0091911084691991 0.8912820224058128 1.0 22.69369750770052 3.2784324357247376 2.129991767682871 0.9746406532087687 1.071494041006946 0.37494523097494525 0.055594193018287205 0.3326236366820645 3.095947883394755 0.01707823872312972 0.024051198031049145 1898.5954498970968 -3.2784324357247376 0.09685338779817732 VEEESTGDPFGFDS(ph)DDESLPVSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEEESTGDPFGFDSDDESLPVSSK 24 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 VEEESTGDPFGFDS(0.929)DDES(0.071)LPVSSK 137.45 8.7582e-06 88451000.0 177430.0 149660.0 142540.0 144610.0 147800.0 192880.0 177470.0 174670.0 227660.0 193970.0 True False 176474.73659432604 154641.34262861952 162608.3930201097 162917.61117280272 166621.4539207661 179546.65959068222 168885.0980987633 187704.76235628795 171556.24348770804 181590.66853392788 0.9718271209588835 0.8515930024219651 0.8954666797194396 0.8971695103504929 0.9175661682727658 0.9887438657517593 0.930031809796489 1.0336696476295957 0.9447415160303513 1.0 17.470330542672905 2.8321896397774875 3.070771446470092 0.9824041079564355 0.899791567548925 0.4707998205201729 0.03844315490021976 0.2106154065649953 3.8369638471113516 0.011969013022288363 0.01265386397677539 679.5002796092931 -2.8321896397774875 -0.08261254040751054 VEEGGRHPS(ph)PCQFTIATPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEEGGRHPSPCQFTIATPK 19 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 VEEGGRHPS(0.992)PCQFT(0.008)IATPK;VEEGGRHPS(0.948)PCQFT(0.052)IATPK 139.95 1.0866e-07 1551040000.0 1410100.0 1374090.0 1234650.0 1255430.0 1219140.0 1556690.0 1623630.0 1472940.0 2124080.0 1726860.0 True False 1402508.1782768373 1419825.7549950555 1408477.9882298214 1414367.3092778616 1374390.2525910882 1449079.6843540987 1545088.814031076 1582858.2622377686 1600628.9452137875 1616650.316360772 0.8675396058648056 0.8782516173263822 0.8712323091615969 0.8748752250033465 0.8501468986100634 0.8963470143723535 0.9557347055170301 0.9790974870811443 0.9900897732893469 1.0 20.62457622500102 2.1836650793440575 1.9257251911228785 0.9884484407063641 0.8689120827201886 0.9742173384544361 0.008838043460543905 0.04974990807696703 0.3657804278030092 0.004703112900838776 0.0028782168857065553 152.63884789126035 -2.1836650793440575 -0.11953635798617546 VEELARSLRADIER ddPTM_BT-474_Trastuzumab_2h_R1 3 VEELARSLRADIER 14 2 Q9BX97 Q9BX97 PLVAP Plasmalemma vesicle-associated protein 0 ;; 77.91199999999998 0.014022 653870000.0 1276010.0 1109530.0 923180.0 862180.0 818990.0 988510.0 960920.0 560610.0 1539950.0 982650.0 False True 1269140.1039380375 1146460.0353249512 1053155.7195755932 971331.899598694 923283.5219659548 920176.6304022453 914436.6285291255 602445.5649198989 1160449.9567728012 919936.4357110092 1.3795954314573187 1.2462383169320435 1.1448135748222867 1.0558684947052477 1.0036383886157947 1.0002610992258942 0.9940215356535661 0.6548773823207416 1.2614458039982965 1.0 19.81117465402751 4.3612535384337825 0.6701081568435406 0.9294273166367297 1.5325272046996932 0.45611198027577704 0.14021156762609413 1.7003495008645555 0.8029018617300246 0.06404035044362093 0.7266216789218075 22974.89516855994 -4.3612535384337825 0.6030998880629634 VEELDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEELDRK 7 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 ; 86.95299999999997 0.031584 319750000.0 511230.0 689640.0 631930.0 560870.0 630570.0 604600.0 628350.0 551190.0 646340.0 669090.0 False True 508477.5944829926 712594.2505038162 720900.2511659741 631876.0844927026 710869.351818791 562805.4250753132 597954.3099698995 592322.5966861083 487058.1675122778 626388.1033632319 0.8117612575220559 1.1376241768924447 1.1508843276161906 1.0087613112381995 1.1348704549175799 0.8984931579215384 0.9546067474132022 0.9456159743548488 0.7775661205842553 1.0 19.256697287030878 2.7228587711044967 24.631421533668366 0.918044216050093 1.0571652457002407 0.28145833547727894 0.10620319300652682 844.8782882459888 1325355.0028091331 0.03325053151045206 0.03145178808674561 528.2734337833308 -2.7228587711044967 0.13912102965014772 VEELEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEELEHR 7 0 Q08379;Q08379-2;A0A087WYC0 Q08379 GOLGA2 Golgin subfamily A member 2 0 ;;; 194.25 0.00048478 1860380000.0 1695042.0 1961152.0 1793741.0 1878627.0 1857426.0 1975808.0 1951101.0 1692631.0 2260082.0 1874542.0 False True 1685916.082208872 2026427.7587785837 2046284.14132373 2116460.9855800355 2093958.1912735624 1839225.043511748 1856718.7907003728 1818943.7202260608 1703115.074647219 1754907.1246838516 0.9606867842151998 1.1547207999076572 1.1660355767786685 1.2060244988527915 1.1932017152479173 1.0480469408562498 1.0580154155080217 1.036490019694772 0.9704872985537836 1.0 20.742963249823482 2.5906402842369998 5.056191970448491 1.0257760093639534 1.1423863937010288 0.4166013090955293 0.06732946862221476 0.23747406440258856 8.992323188989237 0.022826209558357936 0.021345193795831937 389.61914074894077 -2.5906402842369998 0.11661038433707538 VEELGDLAQAHIQQLSEAAGEDDHFLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEELGDLAQAHIQQLSEAAGEDDHFLIR 28 0 A6NDU8;A0A0C4DGW6 A6NDU8 C5orf51 UPF0600 protein C5orf51 0 ;; 255.96 8.872199999999997e-54 201496000.0 82163.0 87594.0 85507.0 72291.0 72608.0 90411.0 85213.0 80787.0 103962.0 86560.0 False True 81720.64353716749 90509.51333830875 97545.64235983252 81443.03318783673 81854.19841866705 84161.10037460159 81090.92164472833 86815.73616807388 78341.95811942843 81035.66669225569 1.0084527822485017 1.1169095909586495 1.203737148609831 1.0050270024571781 1.0101008822389264 1.0385686181149736 1.0006818596641214 1.0713274748237565 0.96675897561185 1.0 16.306269408960702 3.692632370773443 24.99769497781185 1.0194386505430197 1.1104209763809698 0.4257253835825411 0.050995740594071866 396.2612216428091 215676.0471110005 0.013413509683833928 0.020780271900796465 4927.565101689449 -3.692632370773443 0.09098232583795007 VEENPDADS(ph)DFDAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEENPDADSDFDAK 14 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 VEENPDADS(1)DFDAK;VEENPDADS(1)DFDAK 227.41 2.1406e-12 200110000.0 688310.0 538440.0 481210.0 412380.0 455830.0 643400.0 605780.0 633620.0 945990.0 687410.0 True False 684604.2154384301 556361.6499061463 548960.1852476991 464587.2657177263 513877.2485839154 598923.2724006883 576476.1070956715 680903.9418571668 712863.4401165625 643538.9052786904 1.0638116978210603 0.8645345997616242 0.8530334075295214 0.7219256860881357 0.7985177653888326 0.9306714287014537 0.8957906077893196 1.0580618145569538 1.1077239220025874 1.0 19.295667843948785 1.8261258702881475 2.3422884001725617 1.068199975239511 0.8608235915195089 0.4687673046315125 0.08708256050835043 0.24572633041727776 2.546899294837718 0.05497705214875133 0.025846823799032304 67.00787882339151 -1.8261258702881475 -0.2073763837200021 VEEPSQCLASGTAISELIIEDNNAS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEEPSQCLASGTAISELIIEDNNASPQK 28 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 VEEPSQCLASGTAISELIIEDNNAS(1)PQK;VEEPSQCLASGTAISELIIEDNNAS(1)PQK 299.27 1.1969999999999994e-71 181446000.0 199056.0 150027.0 139155.0 128406.0 116316.0 222050.0 212680.0 169524.0 252250.0 206170.0 True False 197984.30461320071 155020.5580017635 158746.8144430573 144662.18643423627 131128.15314105424 206700.2061494759 202391.85588350124 182174.74170542962 190086.3674768265 193012.0540889828 1.0257613471225253 0.8031651636135411 0.8224709860342272 0.7494981964574285 0.6793780510755109 1.0709186383467146 1.048596974105017 0.9438516291912165 0.9848419487271635 1.0 17.558331424683278 2.7261334392130117 24.99951674485504 1.0042862307525469 0.8119975285548512 0.5456389194483102 0.08822069009674548 621.4374111559829 1250131.9770207747 0.029411296586957153 0.027907642218053696 532.2717773855329 -2.7261334392130117 -0.19228870219769567 VEEQKEEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEEQKEEQK 9 1 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;H0YFJ7 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 110.38 0.0020941 139680000.0 139800.0 116490.0 93147.0 77920.0 96486.0 104780.0 116300.0 106240.0 155830.0 103150.0 False True 139047.33233324016 120367.29923030801 106261.28795176209 87784.66401068233 108772.92018267282 97536.80522558917 110674.12469085585 114168.16827578879 117427.78451502025 96566.87868884201 1.4399070801623273 1.2464656708865547 1.1003906245552102 0.9090556224100631 1.1263998760192004 1.0100440912030766 1.1460878325317962 1.182270461942357 1.216025474877326 1.0 16.559240825907732 4.545058521044733 2.4454395206305533 1.0931899087922599 1.4544959033135434 0.6157729066701774 0.0877504707326997 0.26324718103950484 2.5375560902998426 0.02365845377166007 0.16561424856121643 35079.91408417039 -4.545058521044733 0.36130599452128354 VEERDPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEERDPPR 8 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 122.13 0.0012799 1118220000.0 1328940.0 1540720.0 1313770.0 1386490.0 1354430.0 1464990.0 1536870.0 1278940.0 1795860.0 1536220.0 False True 1321785.1346991141 1592001.933815091 1498737.3965064501 1562019.4918399786 1526908.6321644324 1363718.6895155183 1462525.726686463 1374380.997125731 1353294.3662911125 1438177.1243758867 0.9190697809720189 1.1069581811808877 1.042109049785397 1.086110650326075 1.0616972042487824 0.9482272151334068 1.0169301832840254 0.9556409803988221 0.9409789262768241 1.0 20.455809936841487 2.7437323928271 24.977004922643285 0.9722127572215893 1.0490562511909567 0.3188570016255352 0.051407649800518596 473.1525402525234 2285084.1349981218 0.015143321475933688 0.01563473998134743 554.2840643606045 -2.7437323928271 0.0768434939693674 VEESGEHVILGTGELYLDCVMHDLR ddPTM_BT-474_Trastuzumab_2h_R1 10 VEESGEHVILGTGELYLDCVMHDLR 25 0 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ;;;;;;;;; 300.91 1.8280999999999996e-63 1515103000.0 724729.0 915465.0 785252.0 840500.0 829671.0 845125.0 849767.0 737910.0 1003498.0 869846.0 False True 720827.139588961 945935.6991147203 895808.6560672607 946907.2138215924 935324.6840047091 786703.4979602611 808660.5237848195 792976.5912310559 756199.3640842829 814331.6835673722 0.8851763404700251 1.16160984301977 1.1000537915250448 1.1628028639060706 1.1485795074401361 0.9660725645770293 0.9930358109637725 0.9737759284487554 0.9286134622339304 1.0 19.635257009435062 2.726224496352754 24.143958512292357 0.9726937008476997 1.0999518622863729 0.3725343529582015 0.07706663104811629 488.04871007651076 955194.9572994433 0.02424080375897725 0.02300887195761582 532.3833888127218 -2.726224496352754 0.1272581614386732 VEESGEHVILGTGELYLDCVMHDLRK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEESGEHVILGTGELYLDCVMHDLRK 26 1 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 121.35 5.8697e-05 18771000.0 5119.1 6146.0 5423.4 6670.6 5604.4 7391.4 5439.1 6212.1 9130.7 7101.9 False True 5091.539334385477 6350.565894664543 6186.967578962138 7515.097276047976 6318.087120118683 6880.449915484065 5175.989953620243 6675.678446404632 6880.561330111633 6648.6506617575105 0.7658003997219451 0.9551661258415145 0.93055988255618 1.1303191667557742 0.9502811083848635 1.03486410484158 0.7785023182812281 1.0040651533705303 1.0348808623211403 1.0 12.698845861198247 4.854815168288066 2.1612799089566113 0.9793290940284525 0.661081000612024 0.3623581082369227 0.08577262737526194 1.1531873300036248 4.6242425388236486 0.02143790290494645 0.7895177725891077 71583.86910531265 -4.854815168288066 -0.31824809341642846 VEEVGPYTYR ddPTM_BT-474_Trastuzumab_2h_R1 5 VEEVGPYTYR 10 0 A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PS43;Q14108;A0A1W2PRS1;A0A1W2PPU6;Q14108-2;A0A1W2PSE4;A0A1W2PS70;A0A1W2PNX7;D6RDG0 A0A1W2PPX5 SCARB2 Lysosome membrane protein 2 0 ;;;; 219.54 1.4574e-08 1253410000.0 563145.0 761150.0 703232.0 614695.0 765860.0 758300.0 685940.0 648122.0 776000.0 677720.0 False True 560113.0898912911 786484.4176251095 802240.9529978799 692515.3239739024 863387.7313921377 705880.5058461955 652758.4616547348 696488.1547368305 584765.1978672643 634467.3293747171 0.882808403142359 1.2395979764635146 1.2644322502602425 1.0914909120007692 1.3608072337515427 1.11255611308128 1.028829116068189 1.0977525910171553 0.9216632138388663 1.0 19.275186351722127 1.9305655027212258 1.3700880152987422 0.9894776664393887 1.1730177027091526 0.24628760236654834 0.1254560344721036 0.5938528640629982 2.0702248967762076 0.08961295584142003 0.03996455334190688 85.22470423486217 -1.9305655027212258 0.1835400362697639 VEFATLQEALAHALTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEFATLQEALAHALTEK 17 0 Q14980;Q14980-2;A0A087WY61;Q14980-3;Q14980-4 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 0 ; 237.86 3.1321e-20 812770000.0 1273930.0 1365280.0 1141200.0 1124170.0 1108150.0 1382960.0 1402880.0 1335910.0 1793990.0 1428100.0 False True 1267071.30242693 1410722.5194708132 1301871.04051178 1266489.806736252 1249266.3339803594 1287359.23033767 1335017.3348779709 1435602.387813529 1351885.2027343963 1336957.4353420758 0.9477274810194204 1.055173846360983 0.9737565356212566 0.9472925414504361 0.9344099527452199 0.9629021809570808 0.9985488689371711 1.073783166063334 1.0111654769237295 1.0 20.35052210446493 1.980301604275825 7.176035815367929 1.0366068951987166 0.9722165030502731 0.33661307371062366 0.03604532316972195 0.18597489439167636 44.673010137785774 0.015415060754231096 0.01013771579629476 95.56560295982278 -1.980301604275825 -0.06439039214844355 VEFEELCADLFER ddPTM_BT-474_Trastuzumab_2h_R1 6 VEFEELCADLFER 13 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ;;;;; 248.42 5.0062e-17 645792000.0 432803.0 596723.0 486352.0 473353.0 516413.0 472235.0 511327.0 510217.0 621322.0 451667.0 False True 430472.83673693327 616584.5643283285 554826.1341526336 533279.4412660236 582175.1345303418 439590.5059716183 486592.159551172 548291.9833694296 468205.51838825323 422841.22536842624 1.0180484089787072 1.4581940627740153 1.3121382232047205 1.2611812880860216 1.376817347984663 1.0396112762860297 1.1507680196678998 1.2966852579043038 1.1072844611598611 1.0 18.68975651514788 2.7463920450426946 24.928060712441663 1.1528284558584694 1.2950361949737703 0.2698562360239427 0.13054404576078887 888.8198479250124 2829183.6754486086 0.03927478725048715 0.040986955106757206 557.6889571123947 -2.7463920450426946 0.14220773911530094 VEFMDDTSR ddPTM_BT-474_Trastuzumab_2h_R1 6 VEFMDDTSR 9 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 ;;;;; 262.9 6.8575e-15 8216590000.0 5141840.0 5972990.0 5431970.0 5636310.0 5233600.0 5814900.0 5685080.0 5447620.0 6724340.0 5918820.0 False True 5114156.904752129 6171797.361401295 6196744.160470367 6349866.2680961145 5900067.938022473 5412929.64980225 5410070.961285384 5854149.0668538455 5067216.508539637 5541075.84024325 0.9229537822979192 1.1138265454836938 1.1183287035100993 1.145962706732662 1.0647874362541594 0.9768734097609149 0.9763575011902175 1.056500440643103 0.9144824316855387 1.0 22.40173468254761 2.8322808237224213 5.0266701251641965 0.993417788851101 1.08350843920319 0.30596369020542546 0.06537591319787243 0.2881194961224905 11.822264088507014 0.020282194827023734 0.02153715318422293 679.6429616455342 -2.8322808237224213 0.09009065035208896 VEFNIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEFNIR 6 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ; 106.85 0.073919 1181670000.0 697670.0 780040.0 768970.0 789330.0 710880.0 779610.0 672330.0 627040.0 906560.0 790020.0 False True 693913.8222384243 806003.1598558616 877234.2919929415 889259.097068172 801406.3542841286 725717.3957045403 639806.8293499831 673832.9088446031 683150.4352816327 739600.2472298499 0.9382282183347792 1.0897821666159817 1.186092480740232 1.2023510002854443 1.0835669096728557 0.9812292497503788 0.8650711404523728 0.9110771817186698 0.9236752392124689 1.0 19.49638618143584 2.6464740525937214 3.003360832914926 0.9157010831809961 1.1116666540398124 0.5549110558587116 0.07412526442628585 0.18922527524178223 3.3121854054996698 0.02676786128742376 0.025270073131282586 443.07174188506224 -2.6464740525937214 0.19596557085881627 VEGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEGDLK 6 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 97.071 0.096521 404990000.0 707540.0 599750.0 547860.0 498370.0 532450.0 630680.0 639590.0 650580.0 953990.0 703440.0 False True 703730.6832550837 619712.3161934683 624993.9259155138 561463.5909009725 600254.3514215964 587082.5760610296 608650.5882289287 699129.583178302 718891.9473110714 658545.8569547159 1.0686130294848624 0.9410313794382917 0.9490514886930504 0.85258085670347 0.9114845155921649 0.8914832123853139 0.9242341771664685 1.061626272179823 1.0916353655847313 1.0 19.32892437854458 1.7277164443616364 5.8191182398401535 1.0571972371621654 0.9291261562037265 0.4685365614558593 0.05673078500764945 0.12226646269687187 10.556515801972845 0.02932584018249509 0.015066065925612868 53.42154503696978 -1.7277164443616364 -0.1280710809584389 VEGDLKGPEVDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEGDLKGPEVDIR 13 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 62.042 0.072638 171270000.0 423310.0 513800.0 463380.0 483420.0 455260.0 570650.0 607050.0 493650.0 924380.0 660390.0 False True 421030.94599416206 530901.5224013414 528619.8762288375 544620.9224338309 513234.6624625706 531202.308665609 577684.6723438012 530488.6697039084 696578.9350573982 618243.3448116762 0.6810116914762953 0.8587258186548856 0.8550352877471913 0.8809167571382892 0.8301499187490771 0.8592123362483087 0.9343969121410768 0.8580580351665591 1.1267067262480341 1.0 19.2378152789932 7.9307405597957965 0.13433750484404827 1.0670995852498022 8.965886760078622e-18 0.5660911826390541 0.07263407718432768 61.08789025353978 0.5606674878078748 0.3384670831186861 12.391655820274405 85259063.85781802 -7.9307405597957965 -1.0670995852498022 VEGDNDKKNPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEGDNDKKNPR 11 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 153.34 1.8291e-05 92787000.0 122710.0 121400.0 106610.0 101820.0 113630.0 131160.0 147570.0 131870.0 243040.0 144010.0 False True 122049.34299436264 125440.72561215029 121619.76132926837 114710.40156016024 128100.10696222365 122093.21791742962 140431.47532785562 141710.80902229194 183146.04856914925 134819.158506836 0.9052818927672964 0.9304369423563034 0.9020955380247508 0.8508464437147771 0.9501624871492456 0.9056073281397828 1.0416284813165857 1.0511177386936925 1.358457140643426 1.0 17.04066600002798 1.8407412368706333 1.6922806168850564 1.1685167684481648 0.9069953432987907 0.5745131048027997 0.08962442585815826 0.23385162551122252 1.2715422533255334 0.05829156574667412 0.02524436048818172 69.30127692537879 -1.8407412368706333 -0.26152142514937404 VEGELEEMER ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGELEEMER 10 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ; 123.86 0.0010489000000000002 558370000.0 402090.0 458170.0 373770.0 341970.0 391540.0 446760.0 453840.0 372460.0 537710.0 473630.0 False True 399925.1921163984 473419.91148038686 426393.56713292026 385263.3669370263 441400.2981606001 415876.53275991883 431886.02536283794 400254.8565135576 405198.5754448536 443402.5279049562 0.9019461255803278 1.067697817865993 0.961639910235961 0.8688795004335382 0.9954843970921491 0.9379209783149058 0.974026980413186 0.90268961344161 0.9138391189589887 1.0 18.758257469688374 4.00440859428647 24.999189042261804 0.9378646779184241 0.9922836916492002 0.08678799054473207 0.05376818688827153 221.52593779803058 1256136.4172792467 0.012428398569086011 0.026688352209001502 10102.0286132814 -4.00440859428647 0.05441901373077607 VEGFLEEDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEGFLEEDRR 10 1 A0A0G2JM25;A0A0G2JNK1;K7ERG0;A0A0G2JMB6;A0A0G2JPH3;A0A0G2JNK3;Q8WX94;Q8WX94-2;Q8WX94-3;Q9NX02;J3KN39;Q9NX02-2;Q9NX02-3;A0A0G2JNC8;A0A0G2JP37;A0A0G2JPB6;A0A0G2JLX3;A0A0G2JPQ2;Q9NX02-4;Q9NX02-5;A0A0G2JLQ8;A0A0G2JMG8 A0A0G2JM25;Q9NX02 NLRP7;NLRP2 NACHT, LRR and PYD domains-containing protein 7;NACHT, LRR and PYD domains-containing protein 2 0 ;;; 231.42 1.1103e-09 1632320000.0 563080.0 660520.0 617270.0 572040.0 495057.0 573900.0 633560.0 548930.0 720520.0 641360.0 False True 560048.4398440695 682505.0089072286 704176.250592979 644460.2053474173 558099.5745172712 534227.6438152868 602912.2823657662 589893.9440100605 542957.5004733524 600427.8557040781 0.9327489298232865 1.1366977771324493 1.1727907756165687 1.0733349547743845 0.9295031354979832 0.8897449356156817 1.00413776049543 0.9824559910171635 0.9042843287752957 1.0 19.19563138403018 3.2923272213548693 6.224015665490203 0.9538033606937208 1.0912638251916116 0.4510434200779755 0.06830506741626395 0.17570773765294453 14.479277989037021 0.019252608776326657 0.025920602788975778 1960.3211309988621 -3.2923272213548693 0.13746046449789073 VEGFPTIYFAPSGDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGFPTIYFAPSGDKK 16 1 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 128.06 0.00010075 734340000.0 450670.0 503090.0 461940.0 399600.0 370170.0 551460.0 550120.0 538270.0 793650.0 557050.0 False True 448243.64279414393 519835.0465256731 526977.136745542 450189.3190280888 417308.9553305138 513338.8681972075 523508.5939375205 578438.4406796773 598065.5918651473 521498.59208550095 0.8595299193456947 0.9968100670163361 1.0105053872497183 0.8632608522062495 0.8002110871702891 0.9843533155944635 1.003854280495718 1.1091850475884715 1.1468211054481487 1.0 18.99230383227484 2.1177648059923255 2.1694691008078664 1.0935776701051534 0.9153535157191387 0.5327676487208979 0.07074579254258466 0.24929944933643525 2.2953056477773393 0.037660009889824986 0.022473579552320787 131.14894640185096 -2.1177648059923255 -0.1782241543860147 VEGIVHPTTAEIDLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGIVHPTTAEIDLK 15 0 Q9P0M6;Q5SQT3 Q9P0M6 H2AFY2 Core histone macro-H2A.2;Histone H2A 0 ; 185.67 4.1349e-07 386990000.0 458210.0 392630.0 594640.0 450590.0 657930.0 1020040.0 538000.0 726630.0 1166270.0 740290.0 False True 455743.04827191733 405698.45220015326 678360.1432964646 507634.64779996645 741713.4856433661 949527.0357158824 511974.88464041677 780854.8203523764 878858.3857173371 693044.0584058436 0.657596068740894 0.5853862352320724 0.9788124363360747 0.7324709614676442 1.0702255890476475 1.3700817779175642 0.7387335313400906 1.1267030008864332 1.268113296777853 1.0 19.402587545158838 3.847664672418028 0.9417850150528946 1.0916557053070517 0.5864376521827015 0.46689619457298215 0.1842773997496033 0.6776973355252757 1.0347905860671511 0.06766031795670975 0.2646107284575696 7041.491711535952 -3.847664672418028 -0.5052180531243502 VEGIYTYSLS(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGIYTYSLSPSK 13 0 O95197-7;O95197-2;O95197 O95197-7 RTN3 Reticulon-3 1 VEGIYTYSLS(0.988)PS(0.012)K;VEGIYTYS(0.07)LS(0.922)PS(0.007)K 192.65 2.659e-06 110882000.0 237950.0 213830.0 207940.0 195999.0 166397.0 243460.0 232380.0 194001.0 318090.0 232140.0 True False 236668.90363873006 220947.20228703518 237216.1445531195 220812.45330376978 187586.67163771112 226630.18324319474 221138.89162219316 208478.3397371171 239700.9816876261 217324.62645494714 1.0890109763413909 1.0166689615032607 1.0915290568889853 1.016048926004001 0.8631634375619143 1.0428186945034355 1.017551002983257 0.9592945960053729 1.102962814650542 1.0 17.72949213929826 3.487354229468089 24.96228192415476 0.9918319115260898 1.0596561713293913 0.1952317370264477 0.060842138124605295 756.8071508357681 1846152.6162571348 0.01615004607622734 0.02327281076972749 3071.5262373533556 -3.487354229468089 0.06782425980330142 VEGNAVACPVSSAQS(ph)PPHSAGAPAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGNAVACPVSSAQSPPHSAGAPAAK 26 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37;H0Y765 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 VEGNAVACPVSSAQS(1)PPHSAGAPAAK;VEGNAVACPVSSAQS(1)PPHSAGAPAAK 348.58 4.685699999999997e-110 782550000.0 339070.0 302400.0 323340.0 297710.0 263840.0 365830.0 387000.0 307380.0 340240.0 349320.0 True False 337244.48479421815 312465.20119534014 368863.4614783382 335400.05547510594 297438.4600978002 340541.0331711905 368279.33151643333 330318.25644401315 256392.41098241962 327026.0985321014 1.0312463938137761 0.9554748156122105 1.1279327953763605 1.0256063873207433 0.9095251462586347 1.0413267769751486 1.126146607776879 1.010066957734227 0.7840120777310126 1.0 18.319046249977806 1.4472028829487027 24.99999999983474 0.8936835250295563 1.0308681381441744 0.3258623365557304 0.07897850384104402 22.243404820556375 18589.700032264496 0.041556587638962764 0.01918736206470214 28.00289183925786 -1.4472028829487027 0.13718461311461816 VEGQATDEKKEPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEGQATDEKKEPK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 129.01 8.926200000000001e-05 330570000.0 520040.0 358940.0 296950.0 309820.0 304520.0 526830.0 513680.0 475330.0 1003000.0 492400.0 False True 517240.1624218754 370887.1009161884 338757.97886433004 349043.1802334393 343298.81696854957 490411.4821244243 488831.33595183893 510801.53827683337 755824.0895114243 460974.61043515103 1.1220578112395623 0.8045716456402625 0.7348733990892669 0.7571852599516259 0.7447239158019618 1.0638579024156785 1.0604300646631963 1.108090395248985 1.639621949672979 1.0 18.814327766505706 2.0958273662841234 1.3111783046249457 1.2778767976575605 0.8285995758458916 0.4630724946592536 0.19050338245176 0.3803374991150468 1.2307974672541337 0.12667538362697708 0.06416334488537806 124.68877730661548 -2.0958273662841234 -0.44927722181166885 VEGQKEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGQKEEK 8 1 A0A1W2PNT1 A0A1W2PNT1 0 ; 81.548 0.013565 741150000.0 458330.0 1182790.0 1143810.0 1271630.0 1275380.0 829880.0 914440.0 677180.0 359760.0 817560.0 False True 455862.4022052503 1222158.4501383463 1304848.5058252546 1432618.2276168382 1437792.0832304906 772512.3489273902 870205.0436999681 727714.610250364 271101.968537019 765382.620851669 0.5956006705482751 1.5967940959756917 1.7048316361995552 1.8717673861247488 1.8785272150948595 1.009315246886306 1.1369542761915072 0.9507853855377715 0.3542045000124957 1.0 19.545821617283085 2.1825475897214135 1.4710793769317831 0.7623611059861544 1.542579876131857 0.39058633590517655 0.39390767846652264 0.42155310015774444 1.7662910326967851 0.24222575962095302 0.13610962862724177 152.2465954620249 -2.1825475897214135 0.7802187701457026 VEGS(ph)PTEEANLPTELQDNSLSPAASEAGEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEGSPTEEANLPTELQDNSLSPAASEAGEK 30 0 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 VEGS(0.557)PT(0.443)EEANLPTELQDNSLSPAASEAGEK;VEGS(0.865)PT(0.135)EEANLPTELQDNSLSPAASEAGEK 197.28 1.7615999999999999e-25 455350000.0 895200.0 674610.0 580570.0 516670.0 547570.0 795210.0 719050.0 754830.0 917020.0 775360.0 True False 890380.34266607 697063.9860396426 662309.2095950976 582080.3690246319 617299.7937983348 740239.0044229903 684266.804462251 811159.2475490757 691032.7084384515 725875.8609809062 1.2266289465293172 0.9603074347970066 0.9124276549162162 0.8019007110086875 0.8504206118166706 1.0197873275778513 0.9426774483691646 1.117490319147578 0.9519984691385526 1.0 19.46936331458523 0.02923695562364259 9.11736694535548 1.0000000092700174 0.9750972911202598 0.003738806238205772 0.11696721853634216 0.0 0.0 0.11729546424826065 0.02764680605745646 1.0696383259284667 -0.02923695562364259 -0.02490271814975764 VEGS(ph)PTEEANLPTELQDNSLSPAASEAGEKLDMFGNDDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEGSPTEEANLPTELQDNSLSPAASEAGEKLDMFGNDDK 39 1 A0A494C1L5;P50851-2;P50851;E9PEM5;A0A494BZW2;A0A494C0R9 A0A494C1L5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 VEGS(0.683)PT(0.317)EEANLPTELQDNSLSPAASEAGEKLDMFGNDDK 176.55 4.3069e-20 47792000.0 53406.0 30040.0 28775.0 29087.0 29916.0 44271.0 40252.0 48690.0 72834.0 38513.0 True False 53118.46802996444 31039.863240436523 32826.26988321636 32769.41121764269 33725.6252739759 41210.6499727244 38304.8569824276 52323.49504281025 54885.03662559836 36055.067367361844 1.4732594308795803 0.8609015460760104 0.9104481638808892 0.9088711687530107 0.9353921025954142 1.142991900495783 1.062398707847162 1.4512105749156106 1.522255833455521 1.0 15.137914417157008 1.8148331130021211 5.6024366144789095 1.365839159465596 1.022049359646698 0.26558410378785724 0.2105784260348484 0.23454186382633144 11.915599381185684 0.09410982595700527 0.054396761961035975 65.2879621397427 -1.8148331130021211 -0.3437897998188981 VEHES(ph)FEK ddPTM_BT-474_Trastuzumab_2h_R1 5 VEHESFEK 8 0 K7EMC6;A0A0A0MSA9;A0A0C4DG49;P15151-3;P15151-2;P15151-4;P15151 K7EMC6 PVR Poliovirus receptor 1 VEHES(1)FEK;VEHES(1)FEK;VEHES(1)FEK;VEHES(1)FEK;VEHES(1)FEK 83.61399999999998 0.018919 8704320000.0 3462763.0 2718460.0 2987695.0 3075281.0 2644071.0 3502812.0 3992413.0 2970827.0 4334613.0 3744257.0 True False 3444119.8687571376 2808942.297756229 3408336.486489528 3464611.2592843315 2980777.769213356 3260670.8511725245 3799284.7306912593 3192525.1962938365 3266405.7069884203 3505295.312640307 0.9825477061340404 0.8013425538290635 0.9723393273596265 0.9883935447009938 0.8503642356364358 0.9302128808988926 1.083870085636097 0.9107721066414568 0.9318489358684171 1.0 21.74110456224324 2.4563783944841813 24.95794402976854 0.9757763474581581 0.9163806946134262 0.15290431591407716 0.06979502106201477 470.04358743062994 565556.3348887018 0.023872986627448887 0.01997545641714576 286.0081405544642 -2.4563783944841813 -0.05939565284473192 VEHHDHAVVSGR ddPTM_BT-474_Trastuzumab_2h_R1 6 VEHHDHAVVSGR 12 0 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 Apoptosis-inducing factor 1, mitochondrial 0 ;;;;; 163.99 3.3829000000000004e-05 537448000.0 360289.0 439170.0 472998.0 391781.0 483183.0 616838.0 412271.0 25118.059999999998 490316.0 230144.0 False True 358349.2440558709 453787.50796612876 539592.0070276827 441380.4344297893 544713.4909999828 574197.4409404659 392327.87670183857 26992.49718412428 369484.1916977902 215456.01288380835 1.6632130116002954 2.1061724010034863 2.504418418429915 2.048587219832282 2.5281888572482645 2.6650332624976243 1.8209186712900611 0.12528077923116893 1.7148938511966547 1.0 17.71703383576097 1.955844382216243 7.638005806505958 0.8746875173357096 2.259883923564579 0.6287562030209579 0.44766752260126425 0.15819606084172277 24.21297630131508 0.18280215385849435 0.11577998479488363 90.33257331664016 -1.955844382216243 1.3851964062288693 VEHTPDGVK ddPTM_BT-474_Trastuzumab_2h_R1 5 VEHTPDGVK 9 0 P11216 P11216 PYGB Glycogen phosphorylase, brain form 0 ;;;; 127.3 0.00044929 4288810000.0 4441420.0 4172100.0 3952660.0 3742210.0 3551300.0 4558500.0 4431940.0 3986800.0 6136230.0 4395400.0 False True 4417507.888208147 4310965.82641229 4509160.1708633825 4215973.40230256 4003537.0047957855 4243381.624554771 4217550.130545072 4284315.260560201 4624038.337769382 4114881.8089087396 1.0735442944300904 1.047652405733508 1.0958176638514934 1.024567313980916 0.9729409472048767 1.0312280696295648 1.0249504910235951 1.041175776005191 1.1237353956943104 1.0 21.972419562267543 3.718762467888903 24.38384256603203 1.0307818503897397 1.0698695520579902 0.19801082397533587 0.03780836247149245 983.0256647984738 1210716.2157429217 0.010257908628311635 0.01591966899653554 5233.1413796442985 -3.718762467888903 0.039087701668250485 VEIAGPGFINVHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEIAGPGFINVHLR 14 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ; 234.82 3.2029e-17 3133600000.0 2334000.0 3675200.0 3649600.0 4020700.0 3669800.0 4640200.0 5019300.0 3668500.0 4764400.0 4854700.0 False True 2321434.003331779 3797526.8102946887 4163431.957108132 4529720.207748342 4137127.2773912502 4319433.895855883 4776497.283411976 3942262.0982655487 3590277.4596891673 4544868.889682219 0.5107812919756406 0.8355635558411487 0.9160730613285617 0.9966668605186241 0.91028528606917 0.9503979104131871 1.0509648131446874 0.8674094223521582 0.7899628233148442 1.0 22.115807245496345 4.774306800948268 2.0849062463922534 0.9354607137015696 0.3666338640895818 0.7715333691531943 0.069414043443305 0.3625599573153823 1.612916075763452 0.017928121131191785 0.40139252610139664 59471.213589490755 -4.774306800948268 -0.5688268496119877 VEIKNVT(ph)PDT(ph)AY(ph)RDFCLAFIGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEIKNVTPDTAYRDFCLAFIGK 22 2 A0A0G2JM25;A0A0G2JNK1;K7ERG0;A0A0G2JMB6;A0A0G2JPH3;A0A0G2JNK3;Q8WX94;Q8WX94-2;Q8WX94-3 A0A0G2JM25 NLRP7 NACHT, LRR and PYD domains-containing protein 7 3 VEIKNVT(1)PDT(1)AY(1)RDFCLAFIGK 56.947 0.036743 2640200000.0 605920.0 949940.0 1044500.0 1054400.0 1063400.0 984030.0 1022000.0 898600.0 613010.0 1056600.0 True False 602657.7940440405 981558.1786491426 1191556.5210432496 1187886.931889931 1198817.6867343897 916006.3222574607 972561.9555808667 965658.0949983419 461941.89941315923 989166.883399229 0.6092579565270454 0.9923079665547037 1.204606160032893 1.200896382426198 1.2119468482554783 0.9260382020773328 0.9832132190259947 0.9762337490312047 0.4670009754326954 1.0 19.915854414573612 1.4104557850836847 9.118781425740293 0.7272308155611648 1.028612609918724 0.22774323288469311 0.20645320244873727 0.4181911668804675 51.52127474417027 0.13442693886735593 0.050437576371335904 25.73094787894066 -1.4104557850836847 0.3013817943575593 VEILANDQGNR ddPTM_BT-474_Trastuzumab_2h_R1 6 VEILANDQGNR 11 0 P17066;P48741 P17066 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 ;;;;; 232.88 1.8194e-14 11083500000.0 3089480.0 3700720.0 3465550.0 3165790.0 2981380.0 3117850.0 3300910.0 2921120.0 4167000.0 3343890.0 False True 3072846.5829534996 3823896.228067523 3953469.3168994044 3566578.6894042403 3361041.070976276 2902320.3681294504 3141232.3725992497 3139108.807546804 3140098.6849392913 3130480.077351738 0.9815895667839567 1.2215047320481234 1.262895536535049 1.1393072631918568 1.0736503628605052 0.9271167030025307 1.0034347112844775 1.002756360041226 1.0030725662997002 1.0 21.577952489135217 3.079931128738826 3.032699180789905 0.9902783116333781 1.1652972441516354 0.5305513322564658 0.07212989858814269 0.1907585392810264 3.5473768710392997 0.022178311818655712 0.02685884343277939 1202.073792308415 -3.079931128738826 0.1750189325182573 VEISAPSNFEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEISAPSNFEHR 12 0 O96013;O96013-4;O96013-2;O96013-3;M0R2X4;M0R0L9;M0R3G6 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 110.92 0.00039454 0.0 226380.0 362170.0 346530.0 386420.0 316470.0 327340.0 296420.0 277360.0 305320.0 344860.0 False True 225161.1952331826 374224.60951361223 395318.4119072449 435340.73237946525 356770.5786353508 304711.7562754762 282081.03216563584 298058.01160554215 230077.97707839307 322850.73955049954 0.6974157641598446 1.1591257620615638 1.224461844063424 1.3484272422159662 1.105063532244273 0.9438161941326881 0.8737196407181016 0.9232068417142982 0.7126450365228444 1.0 18.300507806290902 2.6581803226384015 3.2421792971502374 0.879621540807971 1.1311734260158355 0.28885752612925764 0.17018221375993142 0.3160931548154859 6.463601041506009 0.05915696901421008 0.056201215157280736 455.1770141571348 -2.6581803226384015 0.25155188520786453 VEKIPGGIIEDSCVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEKIPGGIIEDSCVLR 16 1 P49368;P49368-2;B4DUR8;Q5SZX6;E9PRC8;E9PQ35 P49368 CCT3 T-complex protein 1 subunit gamma 0 102.89 0.001351 399560000.0 240360.0 287550.0 236610.0 245620.0 272670.0 279440.0 284930.0 255940.0 376030.0 292630.0 False True 239065.92846650662 297120.92792235455 269922.63134901226 276715.46681601374 307392.90825829015 260122.97053100474 271146.84736169863 275039.5424369866 283362.4450438495 273954.1028668525 0.8726495641596496 1.0845646216394198 0.9852841352779461 1.0100796590387382 1.122059881715623 0.9495129578600618 0.9897528254704832 1.0039621219714372 1.034342767925508 1.0 18.063574684729133 4.75622051578503 24.5513874649369 1.0176514129315868 0.8726494099891927 0.4620292883068786 0.04762586622699861 2740.121934996931 3809330.676286897 0.011009517999060834 0.3474176418565265 57045.38503272147 -4.75622051578503 -0.14500200294239407 VEKPDTK ddPTM_BT-474_Trastuzumab_2h_R1 5 VEKPDTK 7 1 Q02878;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q02878 RPL6 60S ribosomal protein L6 0 ;;;; 80.23899999999998 0.027773000000000003 7688460000.0 10278700.0 8491530.0 7643450.0 7189010.0 7348020.0 8490000.0 9684200.0 9245870.0 14140900.0 10062700.0 False True 10223360.62127092 8774165.442811709 8719581.321941623 8099137.928894203 8283746.791873247 7903106.283310303 9215738.248763425 9935843.76897656 10656064.673352044 9420489.870889094 1.0852260085606409 0.9313916328200048 0.9255974414755865 0.8597363873742817 0.8793329121313983 0.8389273160552125 0.9782652892862413 1.054705636877759 1.131158232681836 1.0 23.167370652084394 1.848216613635958 3.1141063752841123 1.0703853453249927 0.9160064621709869 0.4462078459722171 0.06996352949328345 0.22064475360563576 3.7524950197532805 0.03822949610125293 0.0197967827265702 70.5044637334583 -1.848216613635958 -0.15437888315400583 VEKPGGQDKGSQEDDPAATQRPPS(ph)NGGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEKPGGQDKGSQEDDPAATQRPPSNGGAK 29 3 Q9UGU0;Q9UGU0-2 Q9UGU0 TCF20 Transcription factor 20 1 VEKPGGQDKGSQEDDPAAT(0.039)QRPPS(0.961)NGGAK;VEKPGGQDKGSQEDDPAAT(0.05)QRPPS(0.95)NGGAK 160.9 4.7366e-12 164904000.0 96525.0 70731.0 76195.0 71728.0 68576.0 103878.0 111459.0 93618.0 190639.0 111346.0 True False 96005.32012493578 73085.23857720767 86922.59370118755 80808.75744556251 77308.74711820326 96697.15836250976 106067.30235527182 100604.25054257164 143658.5728817232 104239.80295189345 0.9210044283107685 0.7011260239136908 0.8338714314464143 0.775219783203693 0.7416432584190624 0.9276414155074275 1.0175316851301202 0.9651231841737113 1.3781546857683669 1.0 16.669546736281717 2.0512807662931394 1.1869883501520726 1.1437071202940572 0.7912520875078518 0.5960029059858934 0.11644534717981252 0.31712904477144127 0.8307971130041865 0.08113383921176887 0.03923103517895577 112.5332252966918 -2.0512807662931394 -0.3524550327862054 VELAQLQEEWNEHNAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VELAQLQEEWNEHNAK 16 0 Q9H307 Q9H307 PNN Pinin 0 ;; 358.1 1.4422999999999993e-87 2578810000.0 1093972.0 985989.0 915510.0 846452.0 912449.0 1072820.0 1093820.0 1091230.0 1308180.0 1206800.0 False True 1088082.1763037152 1018807.0478220634 1044405.8502444271 953612.7364113218 1028643.9716410639 998658.4785466384 1040907.7478018211 1172663.1237536643 985796.5677139128 1129780.99080654 0.9630912408315028 0.9017739332777645 0.9244321321947855 0.8440686683270769 0.9104808631155359 0.8839398845201897 0.9213358662183959 1.0379561466302518 0.8725554560890265 1.0 20.10761170116795 1.9800099233042492 23.482995029853704 0.9757024365476031 0.9028913057570895 0.2693392352408186 0.04803263881751297 392.70527509368003 461322.47704540566 0.018637439905925122 0.012229370438145435 95.50144071374069 -1.9800099233042492 -0.0728111307905136 VELDNMPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VELDNMPLR 9 0 Q15233;Q15233-2;C9JYS8;C9IZL7;C9J4X2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 ; 148.52 0.00020894 201380000.0 391200.0 480710.0 445190.0 467530.0 435830.0 404780.0 446230.0 404380.0 515840.0 465770.0 False True 389093.8226664055 496710.14175466885 507868.8823391514 526719.2500630689 491330.36713320354 376798.511349628 424644.1501358604 434556.889000033 388718.1439018677 436044.15983424115 0.8923266460312564 1.1391280689173533 1.1647189186806535 1.2079493284884202 1.1267903859094892 0.8641292466636064 0.9738558367512263 0.9965891738241065 0.8914650847511314 1.0 18.73411472399801 2.7566873303207 24.45107160956553 0.9516874851549435 1.1169187046903364 0.4515197680441533 0.08816950763500896 569.6749636259667 768431.7623304189 0.027293427495772925 0.02889246992317873 571.0673495308292 -2.7566873303207 0.16523121953539288 VELDTHGCGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VELDTHGCGLR 11 0 B7Z879;A0A087WXL6;Q9H270 B7Z879 VPS11 Vacuolar protein sorting-associated protein 11 homolog 0 ; 122.69 0.00038551 859020000.0 349870.0 442020.0 377370.0 368970.0 387360.0 435700.0 417570.0 403590.0 493280.0 421920.0 False True 347986.33879421145 456732.36849326745 430500.4158411593 415681.56416865316 436687.999937401 405581.08452747914 397370.5438276928 433707.9351884947 371717.7536133557 394992.70437611453 0.8809943448040414 1.1563058340904546 1.0898946007651678 1.0523778276492888 1.1055596599616786 1.0268065208143244 1.006019957901081 1.0980150528945347 0.9410749856772131 1.0 18.591466480998445 1.2340470056848196 24.994101512518554 0.9705374773455953 1.0573411994247512 0.1685158266290323 0.0715948891959457 186.54577267802338 1032934.3194070844 0.056544382983757815 0.015996699068604275 17.141428270130596 -1.2340470056848196 0.08680372207915599 VELELS(ph)MTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VELELSMTK 9 0 Q5TZA2-2;Q5TZA2;B1AKD8;A0A087WW81 Q5TZA2-2 CROCC Rootletin 1 VELELS(0.5)MT(0.5)K;VELELS(0.5)MT(0.5)K 62.2 0.0883 898180000.0 440190.0 461660.0 531440.0 448230.0 529810.0 768690.0 442340.0 400900.0 564960.0 509140.0 True False 437820.0659497064 477026.0740206366 606262.132640713 504975.87204194296 597278.1630701026 715552.2696016245 420942.3242971036 430817.1937289509 425733.17807614605 476646.24930331606 0.9185429793890973 1.000796869204102 1.2719330814557932 1.0594353208066454 1.2530847855051972 1.501222910381656 0.8831336130565773 0.9038510097554515 0.8931847857785802 1.0 18.862559418418446 VELFFKDDANNDPQWSEEQLIAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VELFFKDDANNDPQWSEEQLIAAK 24 1 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 229.97 2.1560999999999998e-33 239140000.0 220100.0 195490.0 181760.0 158930.0 181310.0 281550.0 273230.0 232770.0 418170.0 256420.0 False True 218915.0060554088 201996.76647379957 207350.2281137584 179050.52170453983 204398.75379143524 262087.11119741012 260012.82106003922 250140.47938211024 315117.60669091943 240055.05606779293 0.9119366600367956 0.8414601624418796 0.8637611367585672 0.7458727370190233 0.8514661475562166 1.091779175537945 1.0831382821889413 1.0420129593582446 1.3126888966751378 1.0 17.873005796965764 2.740777834438819 5.292326806277224 1.1022516593605396 0.8373109409529802 0.7021510740096604 0.085671635036794 0.09702761084729193 9.421074303063032 0.02667982761973548 0.026756943536063827 550.5259999718047 -2.740777834438819 -0.2649407184075594 VELGEKPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VELGEKPLR 9 1 Q9BSJ8-2;Q9BSJ8;F8VZB1 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 0 ; 153.97 7.005600000000001e-05 631060000.0 632400.0 808230.0 728320.0 594200.0 1022220.0 1133370.0 794890.0 810180.0 1150560.0 973550.0 False True 628995.2286662459 835131.4469646468 830861.1253290744 669425.6590753018 1152393.6578273722 1055022.7995660056 756438.1339253178 870639.7456106795 867019.9047141231 911417.2055019119 0.6901287630617661 0.9162998481082492 0.9116144838098862 0.7344887226554531 1.264397523846125 1.1575629615034653 0.8299581457964159 0.9552592823077368 0.9512876205103683 1.0 19.79775208008463 5.512875281954476 0.7826581534258957 0.9892277904010961 3.195596779851576e-09 0.28652591960721685 0.13998740410707156 10.90730328620115 2.118981916393182 0.05085776662893886 12.491611425721587 325743.14263616584 -5.512875281954476 -0.9892277872054993 VELHSTCQTISVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VELHSTCQTISVDR 14 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 0 ; 178.67 1.9557e-06 1668860000.0 531920.0 744730.0 713620.0 728730.0 774480.0 792120.0 754530.0 686840.0 710620.0 794750.0 False True 529056.2018218678 769517.8878512087 814091.4931037648 820987.1432816291 873105.4372973952 737362.6088499121 718030.5013154894 738095.4885028498 535497.2228201487 744028.3745802927 0.7110699267622812 1.0342587919248303 1.094167266890856 1.1034352604425186 1.1734840593813576 0.9910409791371991 0.965057954571331 0.99202599486775 0.7197268828923672 1.0 19.504998116046586 1.405190709574231 8.195353392284142 0.8566079995892233 1.018672379022899 0.1663735199799009 0.1321787840914311 0.4154618300799223 40.31599028302531 0.08669173433730343 0.032291556286965666 25.42088755271095 -1.405190709574231 0.1620643794336758 VELLNQLEEEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VELLNQLEEEKR 12 1 J3KP58;P30622-2;P30622-1;P30622;F5H0N7;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 0 146.77 0.00052805 0.0 68642.0 64377.0 57212.0 59609.0 54652.0 64017.0 67706.0 58504.0 84315.0 75806.0 False True 68272.43909884318 66519.74952828161 65266.95230438137 67155.49328815153 61611.60825221721 59591.655469808655 64430.80211796289 62869.865557292476 63536.698013116446 70967.99617921821 0.9620172863051137 0.9373203853790196 0.919667396829977 0.9462785608115688 0.8681604606198411 0.8396975915639432 0.9078853227763864 0.8858903864007205 0.8952866282523291 1.0 16.11488095116953 3.2507592198404103 24.993962008241375 0.8912278499359204 0.9394884871431929 0.18821799826093832 0.04036399017677722 305.26739028046404 625464.7791019802 0.010559757725715041 0.014192181344192279 1781.3908605858621 -3.2507592198404103 0.04826063720727247 VELS(ph)PGPPKPAGR ddPTM_BT-474_Trastuzumab_2h_R1 3 VELSPGPPKPAGR 13 1 A0A087WXE2;Q8IZ73-2;Q8IZ73 A0A087WXE2 RPUSD2 RNA pseudouridylate synthase domain-containing protein 2 1 VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR 112.24 0.00055518 1762280000.0 2703360.0 2383080.0 2131610.0 2018220.0 2103390.0 2545130.0 2614640.0 2526790.0 3636820.0 2666500.0 True False 2688805.4101315322 2462399.3771977173 2431722.1597137377 2273726.4450672423 2371244.248730715 2369191.153691582 2488159.8743052366 2715351.900579636 2740574.4418912693 2496321.6870944966 1.0771069385937475 0.9864110823247857 0.9741221142632674 0.9108307061633807 0.9498953043550404 0.9490728562507968 0.9967304643342022 1.087741181201719 1.0978450638231092 1.0 21.251372427591605 1.873884427460139 4.381743077681388 1.0692443481684797 0.9711990761698365 0.40364370639467184 0.047004902194408414 0.207411691256051 6.059615843766599 0.022915159780049484 0.013050166901073945 74.79704274194583 -1.873884427460139 -0.09804527199864321 VENFEAAVHFYGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VENFEAAVHFYGK 13 0 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 0 ; 178.67 1.4401e-05 1622390000.0 2885100.0 2763900.0 2677700.0 2593900.0 2526900.0 3068700.0 3008900.0 2924700.0 3800800.0 3130200.0 False True 2869566.942164743 2855894.7406871687 3054696.8850143664 2922287.4740414387 2848685.736890283 2856567.991942795 2863348.0118857813 3142955.965325678 2864143.7681106897 2930427.9561009523 0.9792313563588891 0.9745657574489724 1.0424064098401378 0.9972220842206457 0.9721057059121732 0.9747955024779279 0.977109164524753 1.0725245637867522 0.9773807140174651 1.0 21.482679938770147 VENMSSNQDGNDS(ph)DEFM ddPTM_BT-474_Trastuzumab_2h_R1 2 VENMSSNQDGNDSDEFM 17 0 Q86WR0;Q86WR0-2 Q86WR0 CCDC25 Coiled-coil domain-containing protein 25 1 VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM 207.95 5.89e-12 502490000.0 624860.0 687150.0 631660.0 607530.0 587840.0 723770.0 763430.0 629810.0 734460.0 731830.0 True False 621495.823188473 710021.3723590535 720592.2375128564 684443.2357085464 662697.9395993445 673737.4834713181 726499.9743141872 676809.6203103787 553462.174259782 685123.9828488146 0.9071289850403875 1.0363399766079024 1.0517691039168724 0.9990063883949332 0.9672671752691822 0.9833803812703356 1.0603919764906302 0.9878644409675109 0.8078277627334405 1.0 19.38600556215332 1.4478321553399418 24.997453408904025 0.9018910923395864 1.0037960469725355 0.2874060141509277 0.06012945043311235 20.647449023576836 17624.9242660867 0.03034536543984561 0.014015903957898281 28.043496129522456 -1.4478321553399418 0.10190495463294913 VENSPQVDGS(ph)PPGLEGLLGGIGEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VENSPQVDGSPPGLEGLLGGIGEK 24 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;Q8WVB6-3 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 VENSPQVDGS(1)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK 327.88 6.209399999999997e-87 382077000.0 429888.0 372621.0 351606.0 338976.0 324470.0 459100.0 465770.0 412283.0 556950.0 476070.0 True False 427573.530773047 385023.46473084897 401109.06858586177 381890.3268440073 365789.3312156355 427363.4976051538 443238.9256858122 443049.6509906538 419697.1352476451 445686.8050159675 0.9593587379319619 0.8638879598803801 0.8999796809588997 0.8568580504202394 0.8207317943876092 0.9588874806150987 0.9945076244066332 0.9940829434579754 0.9416862481100572 1.0 18.765670723653432 2.56131014230316 6.190880593302864 0.9830535540761376 0.8793337238320328 0.6462605891479922 0.03644676006588066 0.14356725488313773 8.56996689917364 0.011867557345022256 0.011113549470903759 364.1750112408817 -2.56131014230316 -0.1037198302441048 VENSWGEDHGHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VENSWGEDHGHK 12 0 Q13867;K7ESE8 Q13867 BLMH Bleomycin hydrolase 0 123.95 0.00019181 251930000.0 502960.0 608360.0 664120.0 549720.0 394200.0 635960.0 741900.0 186630.0 999580.0 597270.0 False True 500252.1192441093 628608.894838614 757622.3233654791 619314.495635939 444399.0333935448 591997.5820888118 706011.4626667759 200557.27828793752 753246.9026857718 559151.7172514262 0.8946625822829544 1.1242188397964912 1.3549494707619925 1.1075965190275185 0.7947736181121624 1.0587423123706803 1.26264740120491 0.3586813240488639 1.3471243661531482 1.0 19.092880263817374 3.370358272936754 7.51877871565888 0.9239497663990464 1.1418069661434458 0.050335306604038066 0.27584320833740356 0.5120493866228594 32.514745269467205 0.07752176585026638 0.10508954318136816 2346.163493979106 -3.370358272936754 0.21785719974439943 VEPPELPADLQHWISYNEASSQLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEPPELPADLQHWISYNEASSQLLR 25 0 Q8WUY1;H0YAR9 Q8WUY1 THEM6 Protein THEM6 0 ; 181.67 2.3559e-17 158540000.0 100648.0 150896.0 147733.0 111341.0 139161.0 169262.0 131129.0 106524.0 136501.0 155436.0 False True 100106.12235104405 155918.4821414417 168532.52228174455 125436.75918395021 156882.32847813074 157561.31633989004 124785.78930857466 114473.36179791184 102862.15756968987 145515.94140454518 0.6879392139775363 1.0714872929830874 1.1581722294824837 0.862013865788262 1.078110940724949 1.082777012738816 0.8575403361591899 0.7866723102156028 0.706878961692076 1.0 17.15081768479015 2.08525663214159 5.9064808305749175 0.8109283617562941 0.999040112629726 0.20811497335997498 0.1437763906254324 0.2695283013518133 14.733163751990148 0.05325491835273424 0.038945308393570174 121.69048784249587 -2.08525663214159 0.1881117508734319 VEPPKEEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEPPKEEQK 9 1 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 0 110.14 0.0021305 372910000.0 435820.0 284940.0 322130.0 303460.0 323080.0 462080.0 460220.0 416770.0 732070.0 445220.0 False True 433473.5935441535 294424.0556501327 367483.1039958467 341878.00488554535 364222.32295481086 430137.4972193191 437957.40038887033 447871.49371517845 551661.1577354224 416805.67842798115 1.0399896546012444 0.706382064564424 0.8816653011586626 0.8202335586572812 0.8738420367220212 1.0319856937689047 1.0507472020070954 1.074533090346477 1.323545206524202 1.0 18.66901540700545 2.458777930161328 1.309310889746402 1.1350724453505967 0.8472630374110952 0.5381038415008299 0.10958625966593094 0.3151396608926979 1.0901023032282162 0.05559494725562658 0.03996985532407282 287.5927477182872 -2.458777930161328 -0.2878094079395015 VEPQLAEDQPVHGDLDLVMNLMDAHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEPQLAEDQPVHGDLDLVMNLMDAHK 26 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5 H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 0 140.19 1.8518e-07 28433000.0 10741.0 11489.0 12134.0 10411.0 9874.6 14147.0 11845.0 10626.0 14067.0 14954.0 False True 10683.17164943729 11871.404419752842 13842.361729381304 11729.031532536126 11132.071778660327 13169.051188455922 11272.012097705829 11418.966077734685 10600.37633814279 13999.622917236482 0.7631042430638655 0.8479802984647997 0.9887667554487088 0.8378105326033618 0.7951694016668409 0.9406718499711909 0.8051654079787828 0.8156624035691372 0.7571901329636169 1.0 13.773100347951159 VEPSSQSPGRS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEPSSQSPGRSPR 13 1 G8JLD3;X6RLX0;Q8IUD2-3;Q8IUD2;Q8IUD2-2;X6RM00;Q8IUD2-4;Q8IUD2-5;K7EKH8;K7EIZ7 G8JLD3 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 VEPSSQSPGRS(1)PR;VEPSSQSPGRS(1)PR;VEPSSQSPGRS(1)PR;VEPSSQSPGRS(1)PR 151.59 2.4165e-05 3537680000.0 2341190.0 2534830.0 2371110.0 2434690.0 2340380.0 2571310.0 2322860.0 2137670.0 2727350.0 2362250.0 True False 2328585.2931706626 2619200.2842129073 2704941.67794242 2742921.5043656076 2638413.5204809383 2393561.3919126764 2210494.38761308 2297193.790268315 2055231.1371176338 2211489.182576026 1.052948986374077 1.1843604322594805 1.2231313176904632 1.240305187100463 1.193048350074955 1.0823301378867998 0.9995501696455114 1.038754251373935 0.9293426137059478 1.0 21.07658675468437 2.4978047648757697 2.576004844259088 0.9988173960616544 1.1850848925590274 0.7278837016309795 0.05365535105722366 0.1550162356467963 2.073886961947984 0.02092191545358636 0.017958648684244377 314.6333576071876 -2.4978047648757697 0.18626749649737295 VEPYVDFAEFYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEPYVDFAEFYR 12 0 Q15750 Q15750 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 0 81.33800000000002 0.041682 26592000.0 22880.0 24282.0 31287.0 32157.0 26267.0 36713.0 31975.0 27681.0 37932.0 33762.0 False True 22756.81662220699 25090.21169122104 35691.93764852096 36228.07290286853 29611.946753293396 34175.116723106104 30428.24709363815 29746.696781269882 28584.166862759073 31607.28025489755 0.7199865486269044 0.7938111564449875 1.1292315365536867 1.1461939341413279 0.9368710788934466 1.081241930577392 0.9626974180710564 0.9411343380821459 0.9043538903772006 1.0 14.947969279025235 4.37432043645955 6.032052054645747 1.0083310225982465 0.7384080740916465 0.6313082053184316 0.0788899328881485 0.12598922088710127 6.182165777889526 0.020668640272915283 0.058402022525729215 23676.659934141684 -4.37432043645955 -0.2699229485065999 VEQATKPS(ph)FESGR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEQATKPSFESGR 13 1 P38159;P38159-2;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 1 VEQATKPS(1)FESGR;VEQATKPS(1)FESGR;VEQAT(0.001)KPS(0.999)FESGR 182.28 6.8627e-06 3999490000.0 3394680.0 2983570.0 2696350.0 2630750.0 2670160.0 3634590.0 3195710.0 3327410.0 4528580.0 3266810.0 True False 3376403.4200644055 3082876.3238438508 3075972.64290566 2963802.6802631267 3010189.0487217344 3383339.348204564 3041121.2985022813 3575718.230445623 3412572.138863057 3058319.388943246 1.1040061519640918 1.008029552109366 1.005772207450352 0.9690952132004832 0.9842624873008629 1.1062740407154215 0.994376620537691 1.1691775042766726 1.1158324899618208 1.0 21.544307648613923 2.231787260234099 1.6084056011410073 1.1020778451083524 1.0150679354883179 0.1388793548230054 0.06198145886337212 0.5230293678193499 2.675197041778618 0.03341869797512081 0.020230271798813614 170.5246866790641 -2.231787260234099 -0.08700990962003452 VEQATKPS(ph)FESGRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEQATKPSFESGRR 14 2 P38159;P38159-2;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 1 VEQAT(0.016)KPS(0.964)FES(0.02)GRR 73.918 0.018000000000000002 198410000.0 429180.0 330180.0 305830.0 280280.0 298750.0 409950.0 402560.0 409190.0 627320.0 390920.0 True False 426869.34256638045 341169.84170197503 348888.2056779866 315763.4192622442 336794.0416700194 381611.12141849875 383086.6348714607 439725.8356247179 472725.391657335 365971.1509165495 1.1664016179890564 0.932231518379355 0.953321606919617 0.8628095916069791 0.9202748381301148 1.0427355283682336 1.046767303685131 1.2015314172263438 1.291701246050206 1.0 18.481370401443314 2.058105561443107 1.9975904303816254 1.18311172150032 0.9634343831334984 0.38533966495308014 0.1027919163021982 0.29617257305903066 2.245152321447528 0.056065546412899216 0.030697698325684603 114.31561613674444 -2.058105561443107 -0.21967733836682157 VEQATKPSFESGR ddPTM_BT-474_Trastuzumab_2h_R1 6 VEQATKPSFESGR 13 1 P38159;P38159-2;H3BT71;H0Y6E7 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed 0 ;;;;; 186.29 7.2348000000000014e-06 23237790000.0 13960880.0 14086230.0 12969630.0 12219170.0 12895850.0 16146950.0 15145420.0 14562810.0 18375860.0 15490730.0 False True 13885716.173279595 14555081.650244132 14795641.169955151 13766115.669140276 14538060.05780861 15030749.35233181 14412778.17347705 15649560.830650823 13847375.526908671 14502098.34911881 0.9574970351875549 1.0036534920567919 1.020241403262458 0.9492499180283621 1.0024797589854977 1.0364534145670803 0.9938408791961346 1.0791238932400244 0.9548532352733684 1.0 23.78975832713068 2.9985043802405107 24.98752885328425 1.021015926812756 0.9854718818289971 0.11533353225734677 0.035786337074862874 97.80283511224657 1634068.8542125365 0.010157860339182891 0.011966883456725346 996.5621312866652 -2.9985043802405107 -0.03554404498375896 VEQHVVDGK ddPTM_BT-474_Trastuzumab_2h_R1 4 VEQHVVDGK 9 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ;;; 106.62 0.0029065 5671600000.0 10255300.0 9455200.0 8709900.0 8218000.0 8606500.0 10800800.0 10327500.0 9706300.0 13394600.0 10802300.0 False True 10200086.604270935 9769910.616210891 9936178.21219204 9258397.957389485 9702486.7602779 10054166.118348392 9827919.370118765 10430633.393592704 10093680.308444405 10112887.965685679 1.0086225259175354 0.9660851231973939 0.9825262818995684 0.9155048477551034 0.9594180013859225 0.9941933651854409 0.9718212446796752 1.0314198504903027 0.9981006753652916 1.0 23.26969171474657 2.084881824222839 1.8684031064566187 1.011510435026267 0.9665170228324791 0.30026901994594224 0.025325065399694695 0.38723885795934193 2.5835478580701623 0.014511838155618592 0.00797670276751168 121.58551095592271 -2.084881824222839 -0.04499341219378783 VEQIAAIAQELNELDYYDSHNVNTR ddPTM_BT-474_Trastuzumab_2h_R1 6 VEQIAAIAQELNELDYYDSHNVNTR 25 0 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 ;;;;; 334.6 5.517299999999996e-88 5213580000.0 1668807.0 1513522.0 1385374.0 1217237.0 1291019.0 1495040.0 1307415.0 1370541.0 1389850.0 1392802.0 False True 1659822.3285338876 1563898.6648266322 1580422.6173133256 1371339.0793938776 1455422.6171808748 1391691.4037456114 1244170.3416396829 1472817.7288861827 1047340.0905358454 1303912.1839222163 1.272955609281202 1.1993895632774647 1.2120621594004557 1.0517112243470559 1.1161968076737419 1.0673198861899977 0.9541826182628129 1.1295375156752445 0.8032290084025502 1.0 20.314415279317963 4.282352672531766 0.36133051853039777 0.9596791668035827 1.4348322045181232 0.621491274331523 0.0807990661767694 3.051932604206066 0.40827687994992323 0.07428284121492344 0.6173378633307111 19158.110441820674 -4.282352672531766 0.47515303771454054 VEQVLSLEPQHELK ddPTM_BT-474_Trastuzumab_2h_R1 5 VEQVLSLEPQHELK 14 0 O95292;E5RK64;O95292-2 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 0 ;;;; 218.78 5.2563e-12 3308310000.0 3006090.0 3248140.0 3285220.0 3063400.0 2829730.0 4026680.0 3814630.0 3143060.0 4116830.0 3559200.0 False True 2989905.5454479973 3356252.3763579032 3747750.420355865 3451226.1259025205 3190079.3423762447 3748325.0893851495 3630101.7735982714 3377611.0973352874 3102292.4091957337 3332048.808815571 0.897317451514405 1.0072638694482197 1.1247585600908594 1.0357669781942098 0.9573927410475744 1.1249310272611375 1.0894503597888916 1.0136739559154033 0.931046508378877 1.0 21.667978103197033 4.691684105088601 3.970593469344794 1.0385434122358443 0.8902179153759798 0.3036618830274026 0.06160878068834829 0.24831400017264002 7.459656816453185 0.014945580603223907 0.09513460929648349 49168.17685977046 -4.691684105088601 -0.14832549685986451 VERLS(ph)SGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ddPTM_BT-474_Trastuzumab_2h_R1 5 VERLSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 38 1 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 VERLS(0.962)S(0.038)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK;VERLS(0.97)S(0.03)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK;VERLS(0.952)S(0.048)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK;VERLS(0.947)S(0.053)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK;VERLS(0.947)S(0.053)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 390.62 9.974199999999993e-180 5119290000.0 724588.0 750409.0 849062.0 752621.0 816559.0 1048623.0 1126441.0 901253.0 1260869.0 1056423.0 True False 720686.8987172953 775385.9099331794 968602.5494207969 847902.741432031 920542.9485256212 976134.1602030258 1071950.745407502 968509.0753300042 950144.7297289929 989001.179690767 0.7287017584171476 0.784009084979677 0.9793745137125639 0.8573323862941665 0.9307804352806225 0.9869898845906692 1.0838720594273417 0.9792800000833467 0.9607114220289167 1.0 19.91561271628369 5.877400446968056 0.4537263509942248 1.0089048027173488 6.249029416202785e-10 0.7353333886158019 0.05265129049881433 6.545072726667865 0.47143457717921783 0.03359672419760402 4.41231150090986 754050.5255401235 -5.877400446968056 -1.0089048020924458 VERPPS(ph)PFSMAPQASLPPVPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VERPPSPFSMAPQASLPPVPPR 22 1 P22681;A0A1B0GW38;A0A0U1RQX8 P22681 CBL E3 ubiquitin-protein ligase CBL 1 VERPPS(0.999)PFS(0.001)MAPQASLPPVPPR 112.11 0.00018367 477380000.0 71036.0 79477.0 77108.0 70515.0 73581.0 91429.0 81832.0 72974.0 92902.0 85019.0 True False 70653.55006884159 82122.34390013899 87964.13616524915 79442.1917699342 82951.10420124419 85108.7284307158 77873.47353140256 78419.69043446369 70007.54692302135 79593.01463157208 0.887685312535147 1.0317782820549632 1.105174073031737 0.9981050741407896 1.0421907573826217 1.0692989683161944 0.9783958289790995 0.9852584526099484 0.8795689828696541 1.0 16.280354199783112 1.7238696368931656 2.224153665055701 0.9423603567080603 1.0250631404048482 0.19138693409147178 0.06125915053799711 0.4099284615684101 4.233262823449911 0.04027835635235779 0.01699515928123543 52.95044775386258 -1.7238696368931656 0.08270278369678796 VERPSTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VERPSTLR 8 1 Q9H425;Q9H425-3;Q9H425-2;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 0 ; 108.98 0.0033806999999999995 175533000.0 152676.0 196139.0 198188.0 186148.0 174669.0 184577.0 194703.0 166681.0 223530.0 195908.0 False True 151854.00937989826 202667.3680464709 226091.14771902302 209714.31771381557 196912.06180572585 171817.62643752224 185284.47205231054 179119.582608968 168444.02664854308 183404.98371472274 0.8279710087709479 1.1050265044144592 1.2327426612937435 1.1434493952466183 1.073646188982589 0.9368209246962228 1.0102477495404991 0.9766342166992558 0.9184266601530814 1.0 17.484673316656732 2.828000728909885 5.59080511790035 0.971528083704275 1.0920745890606984 0.221895533819377 0.09942001989534449 0.33851605494009357 16.653827561314596 0.03155211161019201 0.03349592323039947 672.9777857938311 -2.828000728909885 0.12054650535642342 VES(ph)EES(ph)GDEEGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VESEESGDEEGKK 13 1 Q15435;B5MBZ8;C9JD73;Q15435-3;H7C003;H7C118;C9JRC4 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 VES(1)EES(1)GDEEGKK;VES(1)EES(1)GDEEGKK 125.45 0.0007 1203410000.0 3620300.0 1787740.0 1657970.0 1365480.0 1480520.0 2563950.0 2403710.0 2416790.0 4238100.0 2082950.0 True False 3600808.7070531435 1847243.8451883474 1891397.764666419 1538349.6279941814 1669055.4462704498 2386710.1713891006 2287433.364236088 2597143.1420109556 3193677.0426304755 1950014.3476967874 1.846554981149832 0.947297565974412 0.9699404350026439 0.7888914406251246 0.855919572203053 1.2239449285119908 1.1730341199478018 1.331858478415048 1.6377710484041363 1.0 20.895053308311805 2.073682746239537 1.9180839312775857 1.3521911185613753 1.0595749905293348 0.07989840523779657 0.3134018426466467 0.7098860900611282 4.978948978254532 0.17540988668899263 0.09620426758552841 118.49028559222504 -2.073682746239537 -0.2926161280320405 VES(ph)LEQEAANER ddPTM_BT-474_Trastuzumab_2h_R1 1 VESLEQEAANER 12 0 H7C0V9;E9PG40;P05067-7;P05067-11;P05067-8;P05067-9;P05067;A0A0A0MRG2;P05067-10;P05067-3;P05067-4;P05067-5;P05067-6 H7C0V9 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 1 VES(1)LEQEAANER 128.82 0.00021406 0.0 145410.0 124460.0 119930.0 89893.0 121000.0 113080.0 103570.0 136480.0 174130.0 149870.0 True False 144627.1287165698 128602.57586234123 136815.1015497527 101273.4445830631 136408.6327768112 105263.04576168764 98559.9234241784 146664.83063139752 131217.994722457 140305.16828983754 1.030804000162019 0.9165918649317215 0.9751251733444688 0.7218083682694848 0.9722281398431666 0.7502435373174486 0.7024682313952736 1.0453273562127263 0.9352327952124431 1.0 17.098208627576998 1.6256921579448218 24.999999890813065 0.9926974414550922 0.8675418855643837 0.21873720563555077 0.10953000984465598 1.3362248753091583 1869.4521017704537 0.0514749903729731 0.028467317018069573 42.23691191620394 -1.6256921579448218 -0.12515555589070848 VES(ph)MEALPILSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VESMEALPILSR 12 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 VES(1)MEALPILSR;VES(1)MEALPILSR;VES(1)MEALPILSR 172.76 3.6614e-05 125486000.0 137137.0 131792.0 110109.0 119655.0 125318.0 149392.0 131220.0 122260.0 188304.0 119053.0 True False 136398.66962935321 136178.6170500535 125611.390115415 134803.3107314964 141276.50448202007 139064.8826709413 124872.38729092079 131383.66202370072 141899.00234432644 111454.93561359863 1.2238010715131686 1.2218267078110296 1.1270150525311426 1.209487134772065 1.2675661576065986 1.2477229644908967 1.1203845446902316 1.1788052390895696 1.273151355416631 1.0 16.76610098002145 -1.342941547609827 3.215125377175926 0.998446763503463 1.2030691283492276 0.6062771062944279 0.05009780598549512 31209534.95924023 41950019.00813984 461473.7381964318 0.012418601242830044 0.045400271749145946 1.342941547609827 0.20462236484576468 VES(ph)PPLEEWPSPAPSFK ddPTM_BT-474_Trastuzumab_2h_R1 1 VESPPLEEWPSPAPSFK 17 0 A0A0D9SFF0;Q08050-2;Q08050;Q08050-3 A0A0D9SFF0 FOXM1 Forkhead box protein M1 1 VES(1)PPLEEWPSPAPSFK 110.38 0.0011698 0.0 44540.0 38556.0 31095.0 30575.0 37931.0 45939.0 48418.0 40802.0 65976.0 48912.0 True False 44300.20158885923 39839.31315240584 35472.90571741484 34445.79186507461 42761.288015348946 42763.345058774066 46075.83636527823 43846.85242835789 49717.09883310647 45790.39428433001 0.9674562161177821 0.8700364732618017 0.7746800671151693 0.752249296024567 0.9338484344517283 0.9338933574854185 1.0062336672441778 0.9575556863759693 1.0857538924953136 1.0 15.482757367133493 2.725913888052668 1.8222074634134542 1.002356137540123 0.8414371357512066 0.5536154422804889 0.06561363738927958 0.2809565324883118 1.8514795995062376 0.02623634726023494 0.025476288593979494 532.0027632544746 -2.725913888052668 -0.1609190017889165 VESDLKGPEVDIEGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VESDLKGPEVDIEGPEGK 18 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 117.65 0.00011426 208920000.0 234050.0 174600.0 184110.0 156260.0 143540.0 235940.0 221920.0 207170.0 308580.0 207670.0 False True 232789.90080539987 180411.45545207133 210031.08768719246 176042.49997830132 161818.96817176408 219630.02314301897 211184.88178327383 222630.07738794427 232534.59376015526 194416.322804768 1.197378375678705 0.9279645497319673 1.0803161208748133 0.9054923858172259 0.8323322128372007 1.129689215259824 1.086250777386345 1.1451202973914305 1.1960651780954907 1.0 17.568789824249375 VESELR ddPTM_BT-474_Trastuzumab_2h_R1 1 VESELR 6 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 102.98 0.081604 906660000.0 2060000.0 2751500.0 2494400.0 2586100.0 2444100.0 2481600.0 2442200.0 2093300.0 2488900.0 2547600.0 False True 2048909.1888875153 2843082.0141831264 2845589.8382865307 2913499.9948411905 2755341.6476843306 2310052.8330580513 2324061.4558900087 2249512.675562022 1875543.9445513305 2385009.9868899053 0.8590778236360045 1.1920629388602917 1.193114433033142 1.2215881739935377 1.1552746792802089 0.968571555572562 0.9744451673850748 0.9431879480284381 0.7863882981039726 1.0 21.18556387664778 2.638801468515508 3.5580265559021425 0.9293098240254326 1.1375123233311106 0.43067754134602565 0.10911408012870359 0.23079845575094218 5.448177314407391 0.03704424651403328 0.034871931514304844 435.31283118608525 -2.638801468515508 0.20820249930567802 VESGDPSLHPPPSPGTPSAT(ph)PASPPASATPSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VESGDPSLHPPPSPGTPSATPASPPASATPSQR 33 0 H3BLU1;Q4KMQ1 H3BLU1 TPRN Taperin 1 VESGDPSLHPPPSPGTPS(0.02)AT(0.737)PAS(0.243)PPAS(0.001)ATPSQR 203.56 1.6392e-26 325880000.0 262040.0 334390.0 329060.0 335730.0 329660.0 336580.0 322740.0 304150.0 310960.0 293510.0 True False 260629.20575538074 345519.96900697623 375388.78775920643 378233.3835768272 371640.24695209553 313313.0168240966 307127.8332134721 326847.217442406 234328.07465052104 274777.94051344634 0.9485084765843013 1.2574516293460176 1.3661532911184937 1.3765056353143392 1.3525112178133862 1.1402407931242375 1.1177310399793272 1.1894958410113408 0.8527907087907376 1.0 18.067906662037878 1.5677690942519795 1.204091502989979 0.9419117622100648 1.2570848621463213 0.40361897264794644 0.1345777096530126 0.4423569004181016 1.2265893243325463 0.12194489017250572 0.04354548998164675 36.963160174729865 -1.5677690942519795 0.31517309993625653 VESGDPSLHPPPSPGTPSATPAS(ph)PPASATPSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VESGDPSLHPPPSPGTPSATPASPPASATPSQR 33 0 H3BLU1;Q4KMQ1 H3BLU1 TPRN Taperin 1 VESGDPSLHPPPSPGTPS(0.058)AT(0.357)PAS(0.548)PPAS(0.035)AT(0.002)PSQR 231.37 3.7725e-37 467190000.0 159660.0 208810.0 211560.0 234100.0 214660.0 217090.0 195100.0 179460.0 195690.0 187800.0 True False 158800.4082998935 215760.1146216897 241345.80908751543 263737.03599718626 241995.6786104984 202083.07927489176 185662.26764562304 192852.2164794154 147464.8216116558 175814.4432163309 0.9032273196377701 1.227203582792158 1.3727302755812356 1.5000874283842027 1.376426613101034 1.14941113811815 1.05601260197477 1.0969076996826725 0.8387526014015111 1.0 17.423694067675022 2.3121828159656532 2.0335807269991806 1.0008382144543904 1.2892679490363357 0.4030228634357702 0.1585859334341886 0.3599732505265295 3.0421073350331986 0.0771425473156458 0.054523770183085185 205.20257959011178 -2.3121828159656532 0.2884297345819453 VETGILRPGMVVTFAPVNITTEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VETGILRPGMVVTFAPVNITTEVK 24 1 A0A2U3TZH3;Q05639 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ; 264.97 2.5395e-44 1120670000.0 1144900.0 974160.0 937790.0 920040.0 894740.0 1115260.0 1172820.0 1202910.0 1689770.0 1362340.0 False True 1138735.9856103493 1006584.3267078433 1069822.680583196 1036516.9696661723 1008679.8354605293 1038164.7012396507 1116086.215992514 1292677.2524532133 1273348.8252579463 1275394.2948420458 0.8928501485506322 0.7892338320617203 0.8388172072823101 0.812703156865338 0.7908768602304683 0.8139950958211121 0.8750911153563992 1.0135510701914408 0.9983962061047538 1.0 20.28251190211274 1.8680084939067316 3.027471831792896 1.0061860421547633 0.8209107922543711 0.8904830327983922 0.02830219239758421 0.07179569755228683 1.1535248414953487 0.014558817748945855 0.007593952631603411 73.79186621591191 -1.8680084939067316 -0.18527524990039212 VETGVLKPGMVVTFAPVNVTTEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VETGVLKPGMVVTFAPVNVTTEVK 24 1 P68104;A0A087WVQ9;Q5VTE0 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 ; 243.47 1.0113e-37 2466900000.0 3624800.0 3127100.0 2821400.0 2728300.0 2524300.0 3697500.0 3761600.0 3599400.0 5498000.0 3969000.0 False True 3605284.479553138 3231183.633128128 3218628.595951573 3073702.500261097 2845754.6423016926 3441900.527978777 3579637.0372925466 3868005.5053828573 4143091.569425539 3715695.021968144 0.9702853593305611 0.8696041020655731 0.8662251818091133 0.8272214167439949 0.7658741165453192 0.9263140563553727 0.9633828977159892 1.0409911153940823 1.1150246575487268 1.0 21.825200661908443 2.0695394040797503 1.8454681880206272 1.0583151375757751 0.8599674373530205 0.6847289108502551 0.05592900265081289 0.19887229570984888 1.2870517213239456 0.033058438427390056 0.017838728473819603 117.36521645846001 -2.0695394040797503 -0.1983477002227546 VETPSHPGGVSEEFWER ddPTM_BT-474_Trastuzumab_2h_R1 1 VETPSHPGGVSEEFWER 17 0 Q92620;H3BQT9 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 179.14 9.3258e-10 237070000.0 105480.0 126260.0 113980.0 126610.0 121920.0 123640.0 123100.0 101020.0 127190.0 119310.0 False True 104912.1073999297 130462.48777421826 130027.39326807982 142638.81301838424 137445.78932354384 115093.05781725392 117145.18271233328 108558.62536916594 95845.72875868215 111695.53365356983 0.9392685989156977 1.16801884110116 1.1641234793807183 1.2770323785800315 1.2305397076112274 1.0304177262290695 1.0487902146174066 0.9719155441422287 0.8580981318013415 1.0 16.76921197266025 2.1660778049253824 1.531496503120297 0.9402952393361366 1.1590122629250748 0.4740176988756265 0.09333407600594429 0.34740227205685087 1.5758151510381673 0.05714318652114087 0.031952447741722734 146.5810420979067 -2.1660778049253824 0.2187170235889382 VETQFQNGHYDK ddPTM_BT-474_Trastuzumab_2h_R1 3 VETQFQNGHYDK 12 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;; 202.24 1.39e-07 2325790000.0 2058060.0 2015820.0 1923240.0 1720420.0 1899710.0 2376400.0 2386930.0 2059200.0 2818870.0 2435000.0 False True 2046979.6336319626 2082915.3501110799 2194015.4748982457 1938224.995601364 2141626.808036659 2212125.061443888 2271465.076941913 2212867.960405728 2124197.259422801 2279596.215291618 0.8979571118344317 0.9137211827861463 0.9624579389019453 0.8502492601977829 0.9394763834360423 0.9704021469262273 0.9964330795536679 0.9707280375189806 0.9318304904937134 1.0 21.120346871878315 2.9236197526183787 4.241420303917314 0.9733155637391028 0.909084412130334 0.5127755000204564 0.030923981859240984 0.19005551321494676 6.398020158880379 0.00941838193676465 0.010239746444622234 838.7253173565375 -2.9236197526183787 -0.0642311516087688 VETVSQPSES(ph)PKDTIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VETVSQPSESPKDTIDK 17 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 VET(0.001)VS(0.04)QPS(0.217)ES(0.741)PKDT(0.001)IDK 63.165 0.04916 0.0 162640.0 103070.0 80445.0 65983.0 81622.0 148450.0 143900.0 118290.0 188290.0 121240.0 True False 161764.36431100257 106500.62264286928 91770.95675952524 74336.4410346106 92016.0778885031 138188.00091371182 136939.00724861704 127117.40046444915 141888.45245673583 113502.3594012137 1.4252070632222715 0.9383119717045322 0.8085378774826061 0.6549330025100404 0.8106974901133126 1.2174901177625577 1.206485997040452 1.1199538153661488 1.2500925373293923 1.0 16.792362761918213 2.7325398786290203 24.89366318572212 1.1662045032101616 0.9063802802616834 0.2501856027592929 0.19829473773372194 629.9864998569137 2604769.6454265737 0.06594423246966336 0.06367150393287357 540.1817140989249 -2.7325398786290203 -0.2598242229484782 VETYLNENLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VETYLNENLR 10 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 101.97 0.010021 0.0 46036.0 76475.0 58371.0 68305.0 75634.0 59653.0 53491.0 61888.0 59653.0 52799.0 False True 45788.147291080415 79020.42414488623 66589.12943017269 76952.40599653058 85265.54158215987 55529.328518057635 50903.435974536296 66506.39682089633 44952.31745924729 49429.32261650191 0.9263357227516225 1.5986548057307461 1.3471584457429324 1.5568169241073138 1.7249991921534868 1.1234086485239279 1.0298226493911584 1.3454846900672126 0.9094261276451324 1.0 15.593079515351237 2.6344136343278333 11.891764257362714 1.118009758586437 1.4424220116372073 0.3685564583430345 0.2257719229852413 0.7839165604611152 85.9396520968739 0.07139538810176428 0.06730083825913463 430.93685152397745 -2.6344136343278333 0.32441225305077026 VEVGKDQEFTVDTR ddPTM_BT-474_Trastuzumab_2h_R1 4 VEVGKDQEFTVDTR 14 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 ;;; 183.41 1.2867e-06 2701350000.0 3629320.0 3226670.0 3040500.0 2792010.0 2816580.0 4009090.0 4043620.0 3544900.0 5325890.0 4131540.0 False True 3609780.144375356 3334067.7603867985 3468575.9715002347 3145478.179728769 3175254.7678224035 3731951.0446827435 3848014.6524715256 3809438.4386374657 4013395.7727696914 3867861.580010646 0.9332754209796257 0.8619925225911579 0.8967683821536053 0.813234422861666 0.8209328855593803 0.9648615824231414 0.9948687596159876 0.9848952347014912 1.0376265256003925 1.0 21.883104735026862 2.5788814469612245 4.46998281888591 0.9989544894316749 0.8643817898465938 0.7833965578499263 0.03488471575014734 0.10913889322191939 3.6378738106882342 0.012119727159205817 0.011263990544169825 379.21145428476643 -2.5788814469612245 -0.1345726995850811 VEVNNLNNLNNHDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VEVNNLNNLNNHDR 14 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 0 ;; 176.33 2.2421e-06 1632210000.0 833710.0 783760.0 755820.0 750840.0 739910.0 857080.0 901490.0 768020.0 912370.0 799260.0 False True 829221.3979938886 809846.9778070747 862232.8862947905 845896.2670146405 834133.1527098373 797832.0769493036 857881.4846737707 825333.5523265391 687528.6386316443 748250.5425190869 1.1082135606640555 1.0823206022418843 1.1523317890181097 1.1304987019011254 1.1147778789462885 1.0662632789590687 1.1465163550508048 1.1030176463994825 0.9188481659057486 1.0 19.513161894186666 1.2628961738732092 12.41227527126363 0.9594496179170162 1.113535572140447 0.7984749596329291 0.030859078608115993 0.29788217433874203 152.14697145670218 0.019870175717891583 0.007140483933598399 18.318764260833724 -1.2628961738732092 0.15408595422343074 VEVPQPLSWYPEELAWHTNLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEVPQPLSWYPEELAWHTNLSR 22 0 Q08J23;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ; 229.66 2.6327e-26 421980000.0 405130.0 411410.0 395880.0 389560.0 380800.0 427980.0 415460.0 371920.0 452480.0 431030.0 False True 402948.82509417465 425103.5331474032 451616.4629493554 438878.2560575138 429292.6228215677 398394.74995655345 395362.6125886756 399674.5589714932 340972.3669213658 403521.29637665127 0.998581310856163 1.053484752761616 1.1191886698535276 1.0876210499875574 1.0638660875555406 0.9872954749448648 0.9797812807868255 0.9904670771042342 0.8449922469596212 1.0 18.622285290111403 2.444946208759923 1.390717871019677 0.9477184775919819 1.0697972124818578 0.5362586165168454 0.04908008336476943 0.33730903351521907 1.3174403121616498 0.0257938799114726 0.01856554476922005 278.5776104075664 -2.444946208759923 0.12207873488987586 VEVTEFEDIK ddPTM_BT-474_Trastuzumab_2h_R1 8 VEVTEFEDIK 10 0 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 ;;;;;;; 206.43 3.501300000000001e-07 4809693000.0 7620997.0 6268938.0 5405315.0 5541254.0 5393605.0 7405003.0 7389248.0 6805971.0 10434584.0 7043952.0 False True 7579966.398924361 6477595.811676952 6166336.368159774 6242776.188242428 6080448.626348541 6893112.572112078 7031801.8445714265 7313867.116040469 7863120.589462104 6594400.952729294 1.1494548865408556 0.9822872248912923 0.9350866609965 0.946678285562643 0.9220623177048344 1.0452977641978463 1.0663291320891097 1.1091025808816497 1.192393463155696 1.0 22.652810177735006 2.301184640652447 2.2845069801448425 1.1066715482938627 0.9822962131567212 0.29908086225036357 0.0744095544589683 0.3370330416377641 3.6069071312920626 0.032363951317493776 0.02341375506844505 200.0712293300625 -2.301184640652447 -0.1243753351371415 VEVTEFEDIKS(ph)GYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEVTEFEDIKSGYR 14 1 Q01105-2;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105 Q01105-2;Q01105 SET;SETSIP Protein SET;Protein SETSIP 1 VEVTEFEDIKS(1)GYR 78.078 0.013858 121070000.0 44906.0 43473.0 39466.0 42813.0 45781.0 47975.0 45135.0 40703.0 62774.0 48584.0 True False 44664.23108552564 44919.97252501656 45022.46975537853 48233.12141028423 51610.93898475367 44658.60117100251 42951.64761755613 43740.46454564603 47304.18882850467 45483.32752514495 0.9819912815489041 0.9876140328603498 0.9898675449919173 1.0604571836486476 1.1347221453008498 0.981867501807415 0.9443382873386031 0.9616812780785354 1.0400335991766012 1.0 15.473050184096596 -0.3942844266764388 7.853930849249549 0.9999966273698363 1.0061932667258073 0.0 0.05310928833469766 0.0 0.0 0.056270565538856274 0.013263099491242446 0.40338112543510385 0.3942844266764388 0.006196639355971034 VEWSAFLEAADNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEWSAFLEAADNLR 14 0 F5GYQ2;Q9UI30;F5GX77 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 0 134.2 4.148100000000001e-05 0.0 11317.0 12560.0 12046.0 10510.0 11918.0 10912.0 11845.0 10801.0 12475.0 11855.0 False True 11256.070529436902 12978.05200731967 13741.972094291023 11840.564922385425 13435.686656479635 10157.679124085042 11272.012097705829 11607.025466366686 9400.70340643572 11098.40375042387 1.0142062572743409 1.1693620361237995 1.238193563985829 1.0668709833099388 1.2105963126423924 0.9152378443338846 1.0156426411568718 1.0458283666174417 0.8470320253105487 1.0 13.438064572615893 2.737579478122021 24.998536475323966 0.9782920827781059 1.142895225649272 0.5405131253591177 0.08021143201257452 73.4359152103737 1871063.5951515285 0.02490433430239524 0.024743351279269656 546.4865505783961 -2.737579478122021 0.16460314287116606 VEWTSDTVDNEHMGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VEWTSDTVDNEHMGR 15 0 O60927 O60927 PPP1R11 Protein phosphatase 1 regulatory subunit 11 0 192.46 1.3334e-07 187150000.0 80257.0 135300.0 115820.0 121050.0 113330.0 128290.0 109030.0 111930.0 124380.0 119470.0 False True 79824.90522939105 139803.378709423 132126.44927451308 136374.917588464 127761.90374046305 119421.61426217639 103755.8023649528 120282.78496902343 93728.21560661113 111845.32231658709 0.7137080351330233 1.2499707257644483 1.181331919277935 1.2193171315868174 1.1423088699125281 1.0677390148167663 0.9276722550028846 1.0754386726031637 0.8380164111048467 1.0 16.771145394564012 2.4291798043888004 4.892187068543691 0.9774117696603684 1.1195535671403498 0.15550664079497745 0.15104770074788507 0.36320437696684216 19.268826271560243 0.051809428686878156 0.043563231926872954 268.6456448461877 -2.4291798043888004 0.14214179747998146 VEYFLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VEYFLK 6 0 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 CBX3 Chromobox protein homolog 3 0 ; 116.35 0.055015 1346310000.0 1395370.0 1496310.0 1486560.0 1352320.0 1160730.0 1447680.0 1411540.0 1524490.0 2179300.0 1641500.0 False True 1387857.4829601827 1546113.7738115024 1695854.7265888462 1523523.5733435082 1308542.0853142827 1347605.289072162 1343258.417593556 1638255.185003365 1642240.7161238757 1536738.0646411441 0.9031190902948527 1.0061010457058912 1.1035418238207424 0.9914009474993243 0.8515062621422413 0.8769258210486587 0.8740971857863304 1.0660601326263932 1.0686536332444971 1.0 20.55143984948159 1.6588292968777194 8.802982595297308 1.0502214423555454 0.948297040140815 0.279350403936775 0.07383929773884347 0.17141048520979202 22.563576784375595 0.04057695298467657 0.02140545003762288 45.585770200435675 -1.6588292968777194 -0.10192440221473043 VEYHAGGSTQNSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 VEYHAGGSTQNSIK 14 0 P55263-3;P55263-2;P55263;P55263-4;A0A5K1VW54;A0A5K1VW94;A0A5F9ZH72;A0A5F9ZH31;A0A5F9ZH83 P55263-3 ADK Adenosine kinase 0 151.07 3.519e-07 0.0 133730.0 143570.0 132370.0 118090.0 124400.0 134280.0 136610.0 124050.0 174560.0 159520.0 False True 133010.01253879978 148348.6406601022 151006.54541933452 133040.1818919595 140241.60262343244 124997.53966111963 130001.65239912138 133307.24091313657 131542.02698416173 149339.29702805707 0.8906564794784763 0.9933664053087864 1.0111641639170446 0.8908584983292417 0.9390803721078491 0.8370036698219877 0.87051201516435 0.8926467685735223 0.880826611628206 1.0 17.188234319532082 3.7166980551132776 24.145668897727685 0.8940866373981534 0.9678927539127334 0.23836309172348014 0.05072612005773948 574.3137052096563 634289.0826026283 0.01289376250209224 0.019997603307980255 5208.324744420115 -3.7166980551132776 0.07380611651458002 VEYLDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VEYLDDR 7 0 P04637-7;P04637;P04637-4;A0A087WZU8;A0A0U1RQC9;A0A087X1Q1;A0A087WT22;J3KP33;A0A087WXZ1;E7ESS1;P04637-5;P04637-9;P04637-8;P04637-6;P04637-2;P04637-3;E7EQX7;E9PFT5 P04637-7 TP53 Cellular tumor antigen p53 0 ; 108.0 0.036883 296770000.0 962030.0 1150910.0 1000980.0 1186160.0 1147420.0 1034540.0 964590.0 1042500.0 1270360.0 1076770.0 False True 956850.5373715804 1189217.3436102143 1141909.2833258694 1336327.7343802755 1293537.1357088315 963024.6848452091 917929.0966083636 1120296.643707737 957296.7999518781 1008049.6167308228 0.9492097625856109 1.1797210413778356 1.1327907519365594 1.3256567059804876 1.283207804695036 0.9553346074059005 0.910599122675403 1.1113506965470008 0.9496524616084477 1.0 19.943135220116197 2.726363444922004 24.932762178204815 0.9958381096908112 1.1805514849889345 0.44127563003303694 0.10573289058110705 752.3330519627796 1537873.783785156 0.03562151529548564 0.03380847605414579 532.553747286414 -2.726363444922004 0.18471337529812326 VEYSEEELK ddPTM_BT-474_Trastuzumab_2h_R1 3 VEYSEEELK 9 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;; 173.48 0.00012889 639230000.0 742194.0 656487.0 554896.0 534368.0 488381.0 719011.0 649278.0 672554.0 938566.0 645225.0 False True 738198.1099695056 678337.7729402275 633020.5335575059 602018.9340100142 550573.4254890233 669307.4619398381 617869.9426571747 722743.3946400131 707268.9854400598 604046.188095085 1.222088847704645 1.1229899075754917 1.0479671025717325 0.996643875708472 0.9114757055669983 1.108040204757455 1.0228852608203425 1.1965035271876323 1.1708856034180057 1.0 19.204299343172668 -0.15581393831872958 7.744695917849712 0.9999999999648819 1.0864206558752303 0.07772947812738207 0.0914571852595925 0.0 0.0 0.09432494310545263 0.022232602301633618 0.6985316068843352 0.15581393831872958 0.08642065591034842 VEYSEEELKTHISK ddPTM_BT-474_Trastuzumab_2h_R1 4 VEYSEEELKTHISK 14 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;; 270.06 2.7682e-26 2448800000.0 2875810.0 3845320.0 3899710.0 3874240.0 4016050.0 4985880.0 5390240.0 4728410.0 6848560.0 5440590.0 False True 2860326.9584925296 3973309.1516549764 4448755.271113037 4364718.386765228 4527470.16250672 4641217.8510990795 5129493.498483565 5081267.964579472 5160824.154002363 5093366.888276561 0.5615788183404115 0.7800948250557741 0.8734409612927686 0.8569416817020449 0.888895353862615 0.9112278681085794 1.0070928741242176 0.9976245725151006 1.0132441403114054 1.0 22.280188211325573 5.4554368980542 0.4462527571371146 1.003152622215873 9.073900195242403e-16 0.9179250577766437 0.03782626669263049 2.599630926274412 0.2483952488045144 0.02689755898783465 1.5731747425929445 285388.782061009 -5.4554368980542 -1.0031526222158722 VFCMTEEELKEHLLGDSAIDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFCMTEEELKEHLLGDSAIDR 21 1 Q86TU7 Q86TU7 SETD3 Histone-lysine N-methyltransferase setd3 0 71.535 0.010074 18991000.0 20182.0 22427.0 22286.0 23621.0 17185.0 28008.0 25343.0 18868.0 29780.0 27405.0 False True 20073.342354430995 23173.469137592227 25423.675086615454 26611.41617808432 19373.407886524794 26071.87288374027 24117.062270338425 20276.025969762668 22441.11803155556 25655.98943739907 0.7824037503371366 0.9032381773517556 0.9909450246948978 1.0372399101198768 0.7551222272598821 1.0162099944481175 0.940016845937061 0.7903038009598664 0.874693142757646 1.0 14.64700804448253 VFDDES(ph)DEKEDEEYADEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VFDDESDEKEDEEYADEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 VFDDES(1)DEKEDEEYADEK;VFDDES(1)DEKEDEEYADEK;VFDDES(1)DEKEDEEYADEK;VFDDES(1)DEKEDEEYADEK 262.38 4.715699999999999e-31 8001460000.0 8482350.0 4390100.0 4223860.0 3282910.0 3626340.0 6155410.0 5779520.0 6002540.0 10274130.0 5755960.0 True False 8436681.970077682 4536221.824628507 4818542.773550734 3698526.0693956516 4088132.903998853 5729900.994976572 5499942.537689549 6450480.015080524 7742208.327788642 5388609.704874722 1.5656509623336736 0.841816734384174 0.894208903122398 0.6863599837356632 0.7586619049994634 1.0633356856023746 1.0206607713143727 1.1970583078683907 1.4367728879649184 1.0 22.361481665936235 1.8963898070938436 1.9945217218816544 1.2408077015075472 0.9353213324103279 0.15506020776448004 0.2475466828077203 0.5218987593128349 3.856788465745279 0.1539882844046078 0.07309285172750875 78.77525307902145 -1.8963898070938436 -0.30548636909721927 VFDDES(ph)DEKEDEEYADEKGLEAADKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDDESDEKEDEEYADEKGLEAADKK 26 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 VFDDES(1)DEKEDEEYADEKGLEAADKK;VFDDES(1)DEKEDEEYADEKGLEAADKK 257.25 8.356e-53 818730000.0 1914000.0 993290.0 792890.0 778200.0 752300.0 1464190.0 1461460.0 1429040.0 3713700.0 1243680.0 True False 1903695.2366653907 1026351.0571935162 904522.0200765742 876720.0402093567 848100.9457685552 1362973.991632522 1390763.5964806385 1535682.2213180866 2798508.3960304903 1164307.2776319818 1.6350453812649939 0.8815121891885389 0.7768756903385763 0.7529971314724302 0.7284167694059762 1.1706308272886494 1.1944987575008836 1.3189664367995906 2.403582327272073 1.0 20.151040426035134 1.5934458280934203 2.9689209222150295 1.7313741668832707 0.9841152865737489 0.29216765351892915 0.4116235594305907 0.2300307830778933 4.702495940104905 0.263618391163436 0.10518598398275271 39.21442290049621 -1.5934458280934203 -0.7472588803095218 VFDFAGEEVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDFAGEEVR 10 0 Q9UEE9;Q9UEE9-2 Q9UEE9 CFDP1 Craniofacial development protein 1 0 ; 140.45 9.1374e-05 142962000.0 155442.0 195407.0 187539.0 188629.0 161866.0 174613.0 187088.0 145929.0 215470.0 191934.0 False True 154605.11754322966 201911.0038689742 213942.86108179018 212509.41205943268 182478.67564505214 162542.41430478916 178037.8386944356 156818.9629924474 162370.3056500764 179684.60779703557 0.8604249381108109 1.1236967169555483 1.1906576957523893 1.182680111918516 1.015549845266505 0.9045984310931655 0.9908352244369195 0.8727456676176945 0.9036405935976625 1.0 17.45510730395257 2.9808723488883255 4.834344232843627 0.928650596650975 1.0998145046840626 0.3787218805985433 0.09299883948472706 0.18826392368957431 11.802942937407867 0.028787763806788807 0.03229185853771472 956.9127669331891 -2.9808723488883255 0.17116390803308756 VFDGIPPPYDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDGIPPPYDKK 12 1 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 0 ; 119.69 0.00078634 1176040000.0 1514580.0 1446160.0 1218070.0 1243320.0 1184470.0 1575020.0 1547250.0 1646250.0 2303000.0 1548840.0 False True 1506425.6695656576 1494294.5613778182 1389563.6683457622 1400724.1845195268 1335305.2335962784 1466142.5745982802 1472403.6064310132 1769101.5344881157 1735456.5086189539 1449991.705171362 1.0389201980901168 1.030553868721077 0.9583252534410476 0.9660222051780546 0.9209054292062107 1.011138594358379 1.0154565720477708 1.2200770033226092 1.1968734044681002 1.0 20.46761321650068 1.8646657216655833 5.516739543468893 1.1583447041119923 0.9866379066101091 0.5210955026593909 0.06429381073382749 0.15186121762442953 6.001346740935297 0.02840199881287436 0.016854152970417476 73.22606919607942 -1.8646657216655833 -0.17170679750188322 VFDKDGNGYISAAELR ddPTM_BT-474_Trastuzumab_2h_R1 8 VFDKDGNGYISAAELR 16 1 P0DP25;P0DP24;P0DP23;E7EMB3;Q96HY3;G3V361;A0A590UJI2 P0DP25 CALM2;CALM1 0 ;;;;;;; 264.38 4.7684e-27 78615100000.0 20884950.0 21542670.0 20247390.0 16981420.0 16894980.0 21618800.0 21645800.0 20395370.0 28201800.0 21231680.0 False True 20772507.749736108 22259704.748131003 23098046.518531244 19131266.03085578 19046455.558608033 20124343.24118125 20598709.959014006 21917376.074990347 21251844.274759 19876656.005044244 1.0450705462963445 1.1198918340430097 1.1620690378034155 0.9624992265298901 0.9582323884749263 1.0124612125940173 1.0363267319103637 1.1026691848683308 1.0691860979716992 1.0 24.24457172640672 3.7439169288817484 24.992380046483262 1.0271531227276407 1.110098605697089 0.39873254648442136 0.04945950599743663 544.5033425263939 2540632.24830121 0.014665169745419215 0.025540775279439425 5545.196352296229 -3.7439169288817484 0.08294548296944826 VFDKEGNGTVMGAELR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDKEGNGTVMGAELR 16 1 P08590;P05976-2;P05976 P08590 MYL3;MYL1 Myosin light chain 3;Myosin light chain 1/3, skeletal muscle isoform 0 ; 139.88 1.5993e-06 1010230000.0 839200.0 1037620.0 910070.0 964600.0 927060.0 1101590.0 1099000.0 969720.0 1482350.0 1218200.0 False True 834681.8404438858 1072156.5544454658 1038199.9455297557 1086718.261097334 1045115.5958848796 1025439.676163932 1045837.1714123009 1042085.430538386 1117044.704972344 1140453.4330465076 0.7318859466398288 0.9401142768112859 0.9103396205809114 0.9528826251102335 0.9164035686166064 0.8991508521524303 0.9170362779465207 0.9137465856494027 0.9794741921100351 1.0 20.121176109104923 4.740304922168497 24.965651916465077 0.9301806362442375 0.7318858791639348 0.7902968304129669 0.03147670558891675 62.184808988904436 889957.486656584 0.0069750929566311844 0.044572305343073944 54992.68470645773 -4.740304922168497 -0.19829475708030275 VFDMLNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDMLNR 7 0 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;J3KS25;J3QKZ9;Q14240;Q14240-2;E7EQG2 P60842;Q14240 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ; 139.27 0.0062933 356280000.0 495200.0 606690.0 630670.0 538110.0 461080.0 491170.0 566810.0 459100.0 701440.0 556990.0 False True 492533.8982218927 626883.3098981504 719462.8541180907 606234.670826338 519795.8049647287 457216.57398981357 539391.2348755287 493360.3732625628 528579.510814451 521442.4213368703 0.9445604693211148 1.2022100317249822 1.379755126699391 1.1626109538078586 0.9968421894637571 0.8768304136391608 1.0344214678442183 0.946145447847701 1.0136872053088484 1.0 18.992148430848435 3.2410965118033963 4.585903706109287 0.9709514247316398 1.191951398140377 0.4432496822151607 0.1063214792228548 0.16784361496919117 8.773435196219452 0.031062980813023285 0.04014046374842792 1742.1939922927388 -3.2410965118033963 0.22099997340873734 VFDMLNRR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDMLNRR 8 1 P60842;J3KT12;P60842-2;J3KSZ0;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;J3KS25;J3QKZ9;Q14240;Q14240-2;E7EQG2 P60842;Q14240 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed 0 ; 124.98 0.0020547 1484720000.0 1193890.0 2069800.0 2228200.0 1911590.0 1274040.0 1289370.0 1799970.0 1180520.0 3234900.0 1832130.0 False True 1187462.2288936498 2138692.041779478 2541911.1921384064 2153597.098000262 1436281.4421732936 1200238.8867505053 1712898.574546858 1268616.396959095 2437702.240439188 1715201.89483459 0.6923162995970021 1.2469039640291026 1.4819894962764966 1.2555939359010269 0.8373833112584133 0.6997653689429101 0.9986571141889077 0.7396309441935623 1.42123341151875 1.0 20.709946974021534 3.2409601511238404 24.995465520407006 0.9153108468002182 1.1970932103565564 0.13206102132711794 0.2636933121584391 101.72475878307749 1059635.4566721143 0.07406450578739568 0.09575008324299193 1741.6470604880365 -3.2409601511238404 0.2817823635563381 VFDPQNDKPSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFDPQNDKPSK 11 1 O15145 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 0 ; 84.506 0.014511 876450000.0 2615780.0 2278960.0 2226330.0 1995370.0 2113990.0 2926600.0 2637100.0 2478970.0 3678200.0 2742700.0 False True 2601696.9311204776 2354813.8059395896 2539777.9123927397 2247983.6374101024 2383194.0958995973 2724291.0304753757 2509533.3982997043 2663963.329354598 2771756.8953548614 2567658.537856392 1.0132565887411582 0.9171055150913892 0.9891416148009585 0.8754994498944668 0.9281584995679392 1.061002072631413 0.977362589807127 1.0375068530641174 1.0794881229296402 1.0 21.292021926575707 2.74590824154167 24.970735231650103 1.0292161077862818 0.9417350850900488 0.48604513501774993 0.04437288954506571 482.5295391509231 1639866.500843984 0.013323210696727808 0.013886738254219919 557.0680382384035 -2.74590824154167 -0.08748102269623304 VFEEDALSWEDKLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 VFEEDALSWEDKLNR 15 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;; 300.98 2.4065e-44 1248710000.0 919620.0 956560.0 889380.0 870379.0 823813.0 1068460.0 1122670.0 1001480.0 1415940.0 1171610.0 False True 914668.8680993868 988398.521347269 1014596.9733704596 980568.8921580304 928720.7024277942 994599.8750843024 1068362.1630841205 1076215.5230123983 1067000.5596239343 1096836.846734215 0.8339151541295995 0.9011354097833086 0.9250208692308057 0.8939970380076422 0.8467263888818292 0.9067892622733099 0.974039271442351 0.9811992788323843 0.9727978803783653 1.0 20.064917511735405 2.2879523684753416 3.553288855543129 0.9816384957532986 0.8839539362592735 0.7833637129100531 0.025381621595182532 0.11173897322266763 2.9029667458512716 0.00991677895877607 0.007752284372221093 194.067302136742 -2.2879523684753416 -0.0976845594940251 VFEHIGK ddPTM_BT-474_Trastuzumab_2h_R1 4 VFEHIGK 7 0 P04040 P04040 CAT Catalase 0 ;;; 76.847 0.03965 2799750000.0 2007458.0 2213860.0 2058932.0 1915709.0 2128502.0 2290594.0 2385700.0 2257903.0 2721730.0 2004823.0 False True 1996650.0691775524 2287546.9917933703 2348811.7290422367 2158237.5629779315 2399554.113080233 2132250.6282582907 2270294.5767409676 2426399.1872591204 2050996.1108134899 1876873.4797246766 1.0638170823695832 1.2188072432718995 1.2514491543600423 1.1499110548967473 1.2784847455099795 1.1360651910170716 1.2096151398942474 1.2927878269211066 1.092772705762967 1.0 20.83989997051809 -0.7450010848091368 7.8824221534256935 1.0000019678345051 1.1989511255056922 0.3622091912488459 0.07368146891302602 0.0 0.0 0.0673353191095089 0.015871086918564627 0.17988664217970765 0.7450010848091368 0.19894915767118704 VFELMTSLHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFELMTSLHTK 11 0 Q06323;Q06323-3;Q06323-2;H0YLU2 Q06323 PSME1 Proteasome activator complex subunit 1 0 ; 199.7 4.9371e-08 4971300000.0 4686900.0 6061500.0 6133400.0 5759600.0 5297800.0 6788700.0 7121300.0 6165700.0 8254000.0 7020700.0 False True 4661666.25116354 6263253.363245876 6996929.407531513 6488764.769454915 5972443.427479262 6319413.147880879 6776815.512992185 6625815.842790201 6219912.297933507 6572632.915276321 0.7092540099613275 0.952929129616934 1.0645550265357173 0.9872397946298694 0.9086835526137358 0.9614736178545892 1.031065571491342 1.0080915712469307 0.9463349586247226 1.0 22.648039981408438 4.725040467334052 4.048183070388506 0.989235203111956 0.6882306549321806 0.8014305274799247 0.04139402150730755 0.09212775748545142 3.2239365722285527 0.010453671351545332 0.07940522365187246 53093.391407226845 -4.725040467334052 -0.3010045481797754 VFEVSLADLQNDEVAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFEVSLADLQNDEVAFR 17 0 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;D6RB09;D6RAS7;D6RI02;D6RED7;D6RGE0 P61247 RPS3A 40S ribosomal protein S3a 0 ; 259.48 7.737000000000001e-27 263430000.0 190321.0 243889.0 233752.0 218340.0 208794.0 225693.0 231448.0 209424.0 251766.0 241376.0 False True 189296.33288265072 252006.69793098647 266662.24979119305 245981.82161309518 235382.6782810042 210091.37413417536 220251.97602277927 225052.28231352443 189721.64279155873 225971.17702760946 0.8377012297436599 1.1152161140453587 1.1800719600562681 1.0885539689118882 1.041649122588076 0.9297264230672486 0.9746905730188261 0.9959335755729025 0.839583372035002 1.0 17.785779240833065 2.8628555475567543 4.426733693519679 0.9542436091600631 1.0681757310301705 0.235019905492586 0.09295237790240644 0.3353070419753297 10.59157500151589 0.029094353899095822 0.031076769444888092 729.2149227895123 -2.8628555475567543 0.11393212187010737 VFFPVSEYK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFFPVSEYK 9 0 Q9NU53 Q9NU53 GINM1 Glycoprotein integral membrane protein 1 0 ; 97.602 0.015308 1105810000.0 1045300.0 942630.0 884550.0 655720.0 566970.0 852860.0 853020.0 736240.0 1223660.0 814620.0 False True 1039672.2209437474 974004.8697181313 1009086.9513535704 738734.0847675134 639170.2688055265 793903.7956164932 811756.1637471517 791181.9673509682 922105.3892039376 762630.2541687302 1.3632716709842492 1.2771652637617952 1.323166692951985 0.9686661140564589 0.8381129194805214 1.0410074754795182 1.064416418454273 1.0374384743146066 1.2091119964930264 1.0 19.540624239533642 3.744017785136448 24.924387517608878 1.0209846674672443 1.3167976394447796 0.7048258822015381 0.08851025203248462 247.15909797539734 1128839.3860878528 0.02420583545841073 0.04214299727887779 5546.484263387441 -3.744017785136448 0.2958129719775353 VFFRPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFFRPGK 7 1 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ; 68.485 0.05684 2754100000.0 2946500.0 3292000.0 2866800.0 2775100.0 2718900.0 3338200.0 3288400.0 3039900.0 3932000.0 3519800.0 False True 2930636.371386925 3401572.229943973 3270420.5213277014 3126427.375462586 3065135.798817126 3107438.0912775537 3129327.529092089 3266752.7742994227 2963011.2861006204 3295163.3505476094 0.8893751415692017 1.032292444433348 0.9924911676333751 0.9487928344866479 0.9301923676432442 0.9430300597271275 0.9496729588753283 0.9913780977676068 0.8992001217809763 1.0 21.65191855479531 6.979149029708154 7.839629130055346 0.9599744637100118 0.07774771477546583 0.0 0.043541335518478684 0.0 0.0 0.009126510135887032 0.0 9531231.75546926 -6.979149029708154 -0.882226748934546 VFGALGPIGPSS(ph)PGLTLGGLAVSEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFGALGPIGPSSPGLTLGGLAVSEHR 26 0 Q86YD1;M0QZB9;M0QYQ4;M0QYH7;A0A0C4DGR2;M0QY25;Q86YD1-2 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 VFGALGPIGPS(0.016)S(0.966)PGLT(0.018)LGGLAVSEHR 103.85 0.0022723 214490000.0 233260.0 309180.0 294370.0 310080.0 295850.0 272120.0 274810.0 255540.0 302190.0 284720.0 True False 232004.15407762254 319470.8693967436 335814.7372900924 349336.09620678145 333524.74385966605 253308.98490157822 261516.3904238527 274609.6924058275 227719.32363854197 266548.9258389444 0.8703998838014652 1.1985449515177413 1.2598615291100448 1.3105890226616752 1.251270260459388 0.950328290028953 0.9811196559909137 1.0302412269774204 0.8543246719971243 1.0 18.02404084264367 2.732380315378127 24.92254639724878 0.9719624405917643 1.191166248644068 0.4422192359244239 0.12004661841308341 465.77428443116565 1878266.0732569671 0.039484356881263595 0.03808463038290389 539.983283490479 -2.732380315378127 0.21920380805230366 VFGGTVHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFGGTVHK 8 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 63.565 0.072507 531410000.0 565420.0 546280.0 502980.0 512740.0 491090.0 425900.0 432690.0 375400.0 551360.0 413390.0 False True 562375.841544068 564462.599566767 573795.2120194671 577652.831427584 553627.4005815218 396458.53546075994 411759.13166368334 403414.254242575 415484.71584548254 387007.09627901466 1.4531409034903595 1.458532944211997 1.4826477796825377 1.492615605712621 1.4305355273960698 1.024421875651942 1.0639575749970838 1.0423949796303775 1.073584230987684 1.0 18.562000494741074 2.766033771997767 5.391218943819178 1.044371735475508 1.468802606221532 0.9876921031826829 0.023599533389740357 0.017623717152416455 1.5517377904068725 0.007117065572103969 0.007354546546673513 583.4904764203498 -2.766033771997767 0.42443087074602404 VFGNEIK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFGNEIK 7 0 P19338 P19338 NCL Nucleolin 0 ; 89.296 0.041823 183405000.0 303510.0 323280.0 297030.0 304980.0 283450.0 358680.0 326190.0 314220.0 443470.0 343650.0 False True 301875.93588313117 334040.17937311326 338849.24216895754 343590.4367296958 319545.67736022384 333885.2958419005 310410.9435331923 337668.6919768301 334182.7606935508 321717.9627864326 0.9383247776050564 1.038301301176834 1.053249371698581 1.0679864865294542 0.9932478578211973 1.0378198747439695 0.964854249494467 1.0495798526518276 1.038744488492838 1.0 18.295436964047077 4.742572884007382 24.74536000972366 1.0280848550563089 0.9383247372510565 0.4403460296657511 0.03000114599991387 318.0425329883298 1961414.5221861443 0.007054983389628715 0.05360562276173438 55280.61729926526 -4.742572884007382 -0.08976011780525239 VFGS(ph)LER ddPTM_BT-474_Trastuzumab_2h_R1 2 VFGSLER 7 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-6;Q14680;Q14680-7 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 VFGS(1)LER;VFGS(1)LER 128.38 0.0039472000000000005 331670000.0 309860.0 315390.0 300910.0 277960.0 268890.0 376520.0 373190.0 305750.0 388840.0 379120.0 True False 308191.7481886826 325887.56549271924 343275.512443393 313149.7075001192 303131.5476641056 350492.0586327433 355137.3739757563 328566.61756704096 293015.59218905534 354924.2370190378 0.868331086028795 0.9181890992562418 0.9671796869284529 0.8823001498297851 0.8540739573326064 0.9875123253809889 1.000600513953368 0.9257373357385479 0.8255722253573182 1.0 18.437151570766485 2.733148596643089 24.980004940300418 0.9463061814072665 0.9021050489546089 0.16551684570068848 0.055553506176354024 997.8183141407989 4605567.585534895 0.01842438737148633 0.017850719060733003 540.9393771631871 -2.733148596643089 -0.044201132452657665 VFGWVHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFGWVHR 7 0 O43776;K7EIU7;O43776-2;K7EPK2;K7EMQ6;K7EQ35 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ; 149.94 0.0019825 3691700000.0 2030890.0 2555500.0 2458900.0 2232740.0 1982460.0 2137460.0 2290300.0 2043270.0 2778500.0 2176250.0 False True 2019955.9138930887 2640558.272667629 2805091.7468580618 2515404.655072011 2234914.530038982 1989702.4212396285 2179509.4392043618 2195749.1829148275 2093775.9049925178 2037359.8618186356 0.9914575975252544 1.2960686632505622 1.3768268431253552 1.2346393497841133 1.0969660156375127 0.976608236241355 1.0697714625921988 1.0777424371926159 1.02769076010142 1.0 20.958269397447072 3.1532499273968124 3.830394638143075 1.0416995845040657 1.2415580460827196 0.47105802780135275 0.09612100201446 0.19687205729021237 5.564280157968381 0.028837956434638087 0.03566132525962932 1423.147543176523 -3.1532499273968124 0.19985846157865383 VFHGADSDIEWLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFHGADSDIEWLQK 14 0 Q01780;Q01780-2 Q01780 EXOSC10 Exosome component 10 0 82.34 0.010877 0.0 74279.0 77652.0 76986.0 68100.0 81235.0 89519.0 91007.0 88877.0 104300.0 77088.0 False True 73879.09011717273 80236.59987837469 87824.95962569214 76721.45301754968 91579.7957324319 83330.76223505949 86604.64372949893 95509.45304826132 78596.66254839646 72168.17784164276 1.0237072949144455 1.1118002737222537 1.2169485533971047 1.063092561182549 1.268977525432105 1.1546746048917929 1.2000392183869992 1.3234289115326685 1.0890764447574055 1.0 16.139075208484993 5.9508884619312745 0.7971185570957954 1.1908403948474604 0.04303858780151357 0.125930075732551 0.09450616071338051 21.814260182873536 2.386561917956204 0.030692116809323662 34.5280953908746 893076.0892119963 -5.9508884619312745 -1.1478018070459468 VFHGNESLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFHGNESLWK 10 0 Q13268;H0YJG9 Q13268 DHRS2 Dehydrogenase/reductase SDR family member 2, mitochondrial 0 ; 146.57 2.8419e-05 3973500000.0 5790200.0 6065500.0 6922100.0 5426300.0 5256200.0 9090700.0 6050700.0 4537300.0 9981500.0 6554800.0 False True 5759026.206551699 6267386.500827822 7896671.512028218 6113269.02362893 5925545.914061781 8462281.306206001 5758004.525081355 4875896.365942553 7521693.070247547 6136467.052153391 0.9384921580456883 1.021334661713614 1.2868433000478903 0.9962196442468765 0.9656282456503056 1.3790151946202405 0.9383256646119811 0.7945771279308862 1.2257367319536177 1.0 22.548976861190866 VFHTEDDQYCWQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFHTEDDQYCWQHR 14 0 Q8IWR0;Q8IWR0-2 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 0 110.38 0.00041232 354160000.0 100330.0 234620.0 113980.0 89952.0 96412.0 99063.0 129360.0 87298.0 256310.0 107430.0 False True 99789.8344277108 242429.18486921475 130027.39326807982 101339.91397701362 108689.49672130511 92215.00797921885 123102.36259681087 93812.62005026179 193145.8348780394 100573.72542454963 0.9922058072967884 2.410462412979671 1.2928564863158651 1.0076181780999929 1.0806947466895211 0.916889650750767 1.2240012197734707 0.9327746352663447 1.9204402945472805 1.0 16.617893929175565 4.017788350575049 24.99467742486514 1.13261612878992 1.73891570260535 0.2068421485986386 0.4195176628045016 290.0096165192566 407491.0663494451 0.09536291748128929 0.20594688865966249 10418.095893277648 -4.017788350575049 0.6062995738154302 VFIDQNLS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFIDQNLSPGK 11 0 F5H452;Q5JSB6;Q5JSB5;Q14186 F5H452 TFDP1 Transcription factor Dp-1 1 VFIDQNLS(1)PGK;VFIDQNLS(1)PGK 165.51 7.3513e-05 187600000.0 832060.0 581200.0 547270.0 434850.0 440510.0 748460.0 729680.0 614470.0 982360.0 778430.0 True False 827580.2814105565 600544.8906571803 624320.8590438851 489901.96541382535 496606.33739267045 696720.7218853269 694382.5907517087 660324.8716154365 740270.5409495952 728749.9309525476 1.1356162741982396 0.8240753997358317 0.8567010884348717 0.6722497589447116 0.681449584144121 0.9560491086080031 0.9528406950846399 0.9061062561643433 1.015808728766518 1.0 19.47506431605777 2.5938916421838156 23.14177879963243 0.9548579812778745 0.8250348137891083 0.22173511854822192 0.12229480828051216 18.278727199889634 3575.069914486162 0.04097611001855014 0.03863265794579064 392.54698149446847 -2.5938916421838156 -0.1298231674887662 VFIDQNLS(ph)PGKGVVSLVAVHPSTVNPLGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFIDQNLSPGKGVVSLVAVHPSTVNPLGK 29 1 F5H452;Q5JSB6;Q5JSB5;Q14186 F5H452 TFDP1 Transcription factor Dp-1 1 VFIDQNLS(0.999)PGKGVVS(0.001)LVAVHPSTVNPLGK 126.04 1.2783e-05 189090000.0 84917.0 105440.0 116730.0 123430.0 122500.0 168360.0 146340.0 139850.0 225930.0 197670.0 True False 84459.81630716562 108949.50666017394 133164.56936465134 139056.22534443683 138099.64888561465 156721.66947681046 139260.97512691162 150286.31714391068 170252.57880689556 185054.53136619876 0.4564050157735974 0.5887427119770284 0.7195963718453132 0.75143377640001 0.7462646165217833 0.8468945251963528 0.7525402058452291 0.8121190874624609 0.920013022918028 1.0 17.497590937281124 5.370926749633812 0.24980427478452738 0.9496637645945775 9.152341178352998e-33 0.8741918604033154 0.05223972909912352 5.188905853492288 0.21403793893076092 0.07876251724530567 1.6023532523887782 234923.65529749752 -5.370926749633812 -0.9496637645945775 down VFITDDFHDMMPK ddPTM_BT-474_Trastuzumab_2h_R1 4 VFITDDFHDMMPK 13 0 P14625 P14625 HSP90B1 Endoplasmin 0 ;;; 170.07 2.7431e-05 3316500000.0 4289030.0 4743430.0 4214690.0 3946630.0 4221250.0 4782260.0 5062880.0 4543260.0 6476140.0 4404340.0 False True 4265938.339036027 4901312.200086019 4808081.717257797 4446272.953342908 4758801.166191025 4451673.62242915 4817969.152320204 4882301.13140682 4880182.072830032 4123251.2504548165 1.034605479975413 1.1887008339706144 1.1660899191451017 1.0783415036501742 1.154138052020503 1.0796513120412217 1.1684878896935413 1.1840901353921318 1.18357620634729 1.0 21.975350943899937 2.1890521611837257 24.999982507102963 1.1537808586059737 1.1223564616222264 0.0 0.06667595024769785 380.0957518841912 191931.9663452257 0.023517143434424306 0.01736858470250615 154.5440044340383 -2.1890521611837257 -0.03142439698374733 VFKEENQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFKEENQK 8 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8;Q9NYF8-2;Q9NYF8-4 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 125.83 0.0011356 652050000.0 971090.0 888570.0 849740.0 724460.0 781310.0 1019600.0 986730.0 902870.0 1423300.0 1036500.0 False True 965861.7593382428 918145.5152980929 969376.0059275165 816176.5617194431 880805.1973128136 949117.4518802331 938998.1002253495 970246.7440809641 1072546.7862428825 970349.6826077047 0.9953749423018298 0.9462006653422929 0.99899657134161 0.8411159155801042 0.9077193645756132 0.9781189903928115 0.9676904285699344 0.9998939160504862 1.1053198712453172 1.0 19.888145216018025 1.6448896479550208 2.075786141108985 1.0521454217542576 0.9425334081209937 0.40977144513912533 0.05011644083508975 0.2787172211712903 2.5749449226787298 0.037492260328371496 0.014317980282203997 44.14582607757096 -1.6448896479550208 -0.1096120136332639 VFLALVEEVEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFLALVEEVEDR 12 0 Q9H3U1;A0A1W2PNX8;Q9H3U1-2 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A 0 111.06 0.0033104 138890000.0 43108.0 44958.0 34187.0 29969.0 31838.0 36117.0 41076.0 33207.0 45465.0 33831.0 False True 42875.911317749065 46454.39985231512 39000.23244126906 33763.072327209185 35892.38058138939 33620.31680027305 39088.99695444193 35685.0749617293 34260.75994978757 31671.876615823676 1.3537534209869873 1.4667397330382976 1.231383694573502 1.0660268962509383 1.1332571485030698 1.0615195685460554 1.2341863233614823 1.126711732133377 1.0817407621710189 1.0 14.950914731731851 4.0467004664799475 3.9959643592500647 1.115430238525821 1.4076502442148549 0.7833389379580147 0.06447935805465399 0.08912619507790062 3.0204313374604843 0.01583301219192728 0.03596803614032808 11135.26268039078 -4.0467004664799475 0.29222000568903383 VFLENVIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFLENVIR 8 0 P62805 P62805 HIST1H4A Histone H4 0 ; 107.66 0.0092114 339960000.0 468000.0 607550.0 627620.0 552560.0 540710.0 572500.0 536830.0 492060.0 862250.0 548610.0 False True 465480.3399996882 627771.93447827 715983.4406291667 622514.0393447476 609566.2134607407 532924.4225200403 510861.48201025045 528780.0158300516 649760.041058052 513597.2401113489 0.9063139433902938 1.2223039484055012 1.3940562462406145 1.2120665586321788 1.186856481799991 1.037631009085059 0.9946733395597972 1.0295616380559425 1.2651159124554148 1.0 18.970277924388522 2.7762737086639073 6.449031933657181 1.0581386833970963 1.2002906673721854 0.16116050863651032 0.13274721907107792 0.3463805608783928 43.464038337730166 0.04187162727073774 0.04388634977657695 597.4116791998088 -2.7762737086639073 0.1421519839750891 VFLHLADIYAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFLHLADIYAK 11 0 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 107.4 0.001687 0.0 188690.0 230300.0 226950.0 208550.0 198630.0 223170.0 233390.0 189930.0 335320.0 233730.0 False True 187674.11400543002 237965.39628071015 258902.58731523706 234952.4086168867 223924.35312775223 207742.78318567248 222100.0340636186 204103.54104499792 252684.8790577974 218813.1512936795 0.8576911986133032 1.0875278513827789 1.1832131011529177 1.0737581686831335 1.023358750622867 0.9494072086501376 1.0150214132491864 0.9327754745922968 1.1547974953235651 1.0 17.739339925254605 3.0624998138179964 5.207617110653506 0.9992700092915711 1.0619994273467488 0.026667089846692305 0.09412843113888021 0.53241913894283 28.647234020940452 0.027742386194264425 0.033174536486446776 1154.781489634636 -3.0624998138179964 0.06272941805517773 VFLKNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFLKNEK 7 1 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 67.169 0.060091999999999986 587410000.0 912810.0 1506500.0 1290900.0 1555100.0 1735400.0 1836700.0 2091300.0 1833400.0 3073500.0 2175900.0 False True 907895.5323827246 1556642.94180152 1472647.499296054 1751975.5005520056 1956392.903478331 1709733.25212674 1990135.829458186 1970217.6178165604 2316077.1077899956 2037032.1991182873 0.44569522895892355 0.7641719863217186 0.7229377620704658 0.8600627429013316 0.9604133426683876 0.8393255898786401 0.9769780911266891 0.9672000367344968 1.136986007777634 1.0 20.958037354311887 5.07593685650638 0.43360177599428573 1.021925221098388 5.899074294067259e-16 0.837865203804055 0.07326641512857167 2.633390012665647 0.3113432064073949 0.050428158765555134 1.4749390145384766 119106.88220502292 -5.07593685650638 -1.0219252210983873 down VFLLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFLLDR 6 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2 E9PK91;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 0 106.76 0.074087 252590000.0 415790.0 463990.0 307560.0 339800.0 308200.0 408540.0 227750.0 299500.0 514000.0 392160.0 False True 413551.43283861154 479433.62666212226 350861.7746405567 382818.64515952155 347447.4431554809 380298.59139971586 216732.8624105107 321850.2108301847 387331.5872471307 367132.0130549322 1.1264379518348726 1.30588891628578 0.9556828665553035 1.0427274973219027 0.9463828563037733 1.0358633349220179 0.5903404080920669 0.8766607089151548 1.0550199205569581 1.0 18.485939394000724 3.8198843098889568 0.9140091710657623 0.8797724439184964 1.232311758440503 0.34395329212593273 0.1410235117562851 0.7728610011090952 1.1202840592300136 0.0540320751064178 0.20616137466677942 6605.174717478421 -3.8198843098889568 0.3525393145220066 VFNDMK ddPTM_BT-474_Trastuzumab_2h_R1 5 VFNDMK 6 0 P23528;E9PP50;E9PK25;E9PS23;Q9Y281;G3V2U0;F8WDN3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 ;;;; 114.19 0.059325 10088020000.0 15576590.0 15572590.0 14333230.0 13451190.0 13562760.0 17617100.0 17778100.0 15751440.0 21818100.0 16842000.0 False True 15492727.370161848 16090914.244320557 16351224.197331468 15154109.274818419 15289897.093223343 16399271.343192695 16918105.384062782 16926892.436991654 16441321.602561519 15767129.14083835 0.9825965926818108 1.0205354507209288 1.0370451114642207 0.961120387830645 0.9697324704229807 1.0400924097664068 1.0729984661724687 1.0735557681930448 1.0427593670160884 1.0 23.91041666414229 2.5599724348765935 5.573240717510947 1.0563956877677116 0.9964710035097167 0.4324614185927339 0.028866445357171585 0.1945738729329617 10.003610054338694 0.009733528334811198 0.009084268165924593 363.0550105588776 -2.5599724348765935 -0.05992468425799491 VFNGSGKPIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFNGSGKPIDR 11 1 P21281;H0YC04 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform 0 ; 114.02 0.0011981 1341420000.0 1536670.0 1913650.0 1638030.0 1794910.0 1927530.0 2303320.0 2249930.0 2229370.0 2784200.0 2365510.0 False True 1528396.7394600867 1977344.6834241457 1868650.385988004 2022145.4219637304 2172989.5201346027 2144096.9098320706 2141092.2903327346 2395736.9099114784 2098071.2163686054 2214541.1265849997 0.6901640800940994 0.8928913803797223 0.8438092946458904 0.9131216384687517 0.981236922651117 0.9681901519428724 0.9668333835075219 1.081820915923064 0.9474067522078489 1.0 21.078576359308425 5.9587419038231415 0.4159993060196693 1.018666313074681 2.2318366902446378e-20 0.7980108237403117 0.045006964179064454 5.9112725017644205 0.36468445757236967 0.03126112602259819 3.686013819441601 909372.6823699472 -5.9587419038231415 -1.018666313074681 VFNPYTEFPEFSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VFNPYTEFPEFSR 13 0 Q9BUP0;H7C0I0 Q9BUP0 EFHD1 EF-hand domain-containing protein D1 0 ;;; 216.03 6.551899999999999e-11 838341000.0 256636.0 303025.0 319792.0 266153.0 257664.0 311174.0 321878.0 282467.0 290447.0 304010.0 False True 255254.30029094036 313111.00394251914 364815.93391810666 299847.94251071813 290475.98310582037 289663.2738048056 306307.53144663223 303546.1218783625 218870.22864040354 284607.82152394427 0.8968632658237244 1.100148977866994 1.281819775593955 1.053547793961424 1.0206184129109832 1.0177628719189504 1.0762442500929734 1.0665417424335435 0.769023941325484 1.0 18.11861578464538 1.2667105174186144 23.424450909113382 0.8845122340324977 1.069647582914038 0.3227713234396974 0.10386771556402945 100.5334158337327 83657.6099289591 0.0686965964238003 0.02507000182176651 18.480363843981813 -1.2667105174186144 0.18513534888154026 VFNTTPDDLDLHVIYDVSHNIAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VFNTTPDDLDLHVIYDVSHNIAK 23 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 ;;; 296.62 6.184899999999998e-62 4133662000.0 1684612.0 1755955.0 1667291.0 1671360.0 1565806.0 1771895.0 1823506.0 1311920.0 2258579.0 1762947.0 False True 1675542.2361699874 1814400.9006777871 1902031.0804468337 1882954.0046315969 1765202.1128407256 1649408.0692421799 1735296.0483106084 1409822.1321947756 1701982.4688580504 1650434.213125137 1.0152129802237362 1.0993476057686513 1.1524428331168026 1.1408840107999083 1.0695380032738615 0.9993782582336233 1.051417884160789 0.8542128616718648 1.0312331478122387 1.0 20.65441420271063 2.5254198969644426 1.5306833691611883 0.9561751895071088 1.104485591005246 0.4366223130431175 0.06087865175399429 0.314548875014164 1.4919284243216755 0.028516499687108315 0.02275687421861769 335.28945659983395 -2.5254198969644426 0.14831040149813723 VFNVFCLYGNVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFNVFCLYGNVEK 13 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2;M0QYT0;M0R076 A0A3B3ITJ4;P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ; 208.72 1.0152e-07 251757000.0 246840.0 298930.0 288950.0 259030.0 252330.0 309400.0 299860.0 290410.0 415520.0 323810.0 False True 245511.040866502 308879.70434299886 329631.64840157644 291823.1714410554 284462.72982291575 288011.9062492584 285354.62622356025 312081.8688720997 313120.663682739 303144.16857231164 0.8098821165611111 1.018920158674664 1.087375851410932 0.9626547421823299 0.9383744083306038 0.9500822912269097 0.941316560920393 1.0294833324417259 1.032910067699513 1.0 18.20964454476371 1.690551909743562 7.392192567205294 1.0230669004204516 0.9648241983781576 0.15086716965935998 0.06643218970011121 0.2635348425360817 28.8631097684446 0.03361108901493555 0.01748336780871544 49.04016353298895 -1.690551909743562 -0.05824270204229398 VFPEPTES(ph)GDEGEELGLPLLSTR ddPTM_BT-474_Trastuzumab_2h_R1 3 VFPEPTESGDEGEELGLPLLSTR 23 0 Q9BUR4;E9PMG4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 VFPEPT(0.155)ES(0.845)GDEGEELGLPLLSTR;VFPEPT(0.133)ES(0.867)GDEGEELGLPLLSTR;VFPEPT(0.11)ES(0.89)GDEGEELGLPLLSTR 129.78 2.392e-05 123140000.0 105394.0 122996.0 117523.0 119320.0 109904.0 115854.0 120234.0 110638.0 125856.0 119688.0 True False 104826.57041437426 127089.84750734788 134069.21687177196 134425.89976584478 123899.6229479559 107845.2856709813 114417.82208151634 118894.36936838047 94840.47518399781 112049.4093699478 0.9355388038528052 1.1342304097984295 1.1965187288861336 1.1997019932699302 1.1057588223324128 0.9624797335157211 1.021137217276611 1.0610887646523242 0.8464165560290271 1.0 16.773775518632792 2.814768523336273 5.514062046281997 0.9922629898318014 1.1263012505655459 0.37499961562841 0.08646092051329547 0.25790505508516376 13.928772383770852 0.027296954025880376 0.028915894062291364 652.7825302698103 -2.814768523336273 0.13403826073374447 VFPGSTTEDYNLIVIER ddPTM_BT-474_Trastuzumab_2h_R1 2 VFPGSTTEDYNLIVIER 17 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ; 228.25 3.4693000000000014e-15 373190000.0 78185.0 82034.0 73963.0 67451.0 81225.0 75011.0 80988.0 78423.0 95878.0 81958.0 False True 77764.06064717009 84764.4520993998 84376.34750207933 75990.28968409312 91568.52229170661 69825.6661269009 77070.30103579568 84275.32248392509 72250.15159937833 76727.37027222606 1.0135113502686965 1.1047485636306633 1.099690334788159 0.9903935116566903 1.1934270908389621 0.9100489939790958 1.0044694710942512 1.0983736596851834 0.9416476981165558 1.0 16.227453688858564 2.728951967489074 24.990216454629536 1.0064587774337153 1.077785834022449 0.2795862699975755 0.06952530067671878 1123.6439651936857 2922370.108844701 0.02220264955329966 0.021197844872194595 535.7374022458617 -2.728951967489074 0.07132705658873384 VFPHEVNWNK ddPTM_BT-474_Trastuzumab_2h_R1 1 VFPHEVNWNK 10 0 Q12789-3;Q12789;H3BU37 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 0 90.108 0.011313 0.0 378810.0 426060.0 353730.0 374420.0 363590.0 424390.0 415930.0 355690.0 553500.0 395970.0 False True 376770.5290497472 440241.1495412908 403532.10932372266 421821.53360985295 409891.03133323 395052.9182066027 395809.8768931014 382233.3939572231 417097.34152001404 370698.8555930273 1.0163789916400112 1.187597811266541 1.0885712303540032 1.137908917833161 1.1057251058342352 1.0656977011019224 1.0677396785050834 1.0311156567930142 1.1251649019869796 1.0 18.49988813576919 2.7115086617943187 3.1127711068462265 1.0569081606381707 1.1131272997899846 0.19532425885715687 0.04980855031783609 0.3818672155226061 7.55172170728541 0.015598677966447198 0.015300768908975467 514.6460712794465 -2.7115086617943187 0.05621913915181387 VFPLS(ph)PASNLR ddPTM_BT-474_Trastuzumab_2h_R1 3 VFPLSPASNLR 11 0 A0A2R8YH03;Q5VWN6;J3KPH3 A0A2R8YH03 FAM208B Protein FAM208B 1 VFPLS(0.995)PAS(0.005)NLR;VFPLS(0.998)PAS(0.002)NLR;VFPLS(0.951)PAS(0.049)NLR 145.08 3.8195e-05 113555000.0 144955.0 181642.0 164129.0 175821.0 164465.0 181410.0 178977.0 156710.0 195382.0 198368.0 True False 144174.57838601468 187687.8441650923 187236.93656515796 198079.9205726667 185408.64288957254 168869.55369320625 170319.19875146425 168404.49595725595 147232.7240846673 185707.98440861068 0.7763509945204584 1.0106611450379288 1.0082330986544077 1.06662037824305 0.9983881063596086 0.9093284504216305 0.917134496364536 0.9068242084126975 0.792818491641766 1.0 17.50267631889203 2.6794687292409707 5.855279996454101 0.9005116910828382 0.9813988424353449 0.1271919725985402 0.08546125495325801 0.40194972188560474 29.29334442107816 0.027658918409669452 0.026195960426961477 478.04494396079195 -2.6794687292409707 0.08088715135250668 VFQGTDEQLNDLYHNHQR ddPTM_BT-474_Trastuzumab_2h_R1 4 VFQGTDEQLNDLYHNHQR 18 0 Q92878-2;Q92878;A0A1W2PQ90;Q92878-3;A0A494C1B7;E7EN38;A0A494BZX5;A0A494C122;A0A494C0Y7;E7ESD9 Q92878-2 RAD50 DNA repair protein RAD50 0 ;;; 272.31 3.2356e-39 3779640000.0 494853.1 616149.0 587675.0 558432.0 621468.3 636986.0 584612.0 124525.1 647398.0 382151.9 False True 492188.86589294794 636657.1469950645 670414.5318373299 629129.4339426778 700608.604273794 592952.6571237559 556332.0841252853 133817.79528764548 487855.4375887511 357762.6385652983 1.3757413794428799 1.7795517987797453 1.873908730452766 1.7585107166740948 1.958305671836999 1.6573912231350314 1.555031253001407 0.3740407210330356 1.363628800215561 1.0 18.448643207911214 1.9164401805855005 6.727172637775525 0.863046997601381 1.742144289311379 0.653021609864581 0.26769111188247663 0.13360797764654353 9.053861870457292 0.11093549604872041 0.06846283130727529 82.49738463391056 -1.9164401805855005 0.879097291709998 VFQSLPHENKPLTLSNYQTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFQSLPHENKPLTLSNYQTNK 21 1 P04080;A0A1W2PQG6 P04080 CSTB Cystatin-B 0 ; 245.92 1.7754e-30 2036500000.0 940220.0 813580.0 732560.0 638980.0 651110.0 848540.0 703910.0 773430.0 1018830.0 867710.0 False True 935157.9599882626 840659.518480505 835698.080474334 719874.8024839048 734024.9990686734 789882.4270483064 669859.1841026685 831147.273997962 767752.9981225573 812332.0049160948 1.151201669180638 1.0348718422922856 1.0287641942171817 0.8861829869158733 0.9036022151367658 0.9723640362168087 0.8246125722596117 1.0231620433123407 0.945122183388377 1.0 19.631709960407978 4.450473812379906 1.4074099117880992 0.9375486052468214 1.1715338198668321 0.5675661733831596 0.05767744959564924 0.5260231384670185 1.3883889566414742 0.015821023327067134 0.15058270238166713 28214.59446147133 -4.450473812379906 0.23398521462001076 VFQSWWDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFQSWWDR 8 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 0 95.909 0.021673 346430000.0 291190.0 257000.0 170720.0 216900.0 181680.0 265110.0 136350.0 176090.0 316640.0 258130.0 False True 289622.2653942503 265554.0896402191 194755.892075159 244359.51776074193 204815.8710982732 246783.56970181328 129754.2295924179 189230.72996690197 238608.31475862148 241655.92240378866 1.1984902439523644 1.0988933645768402 0.8059222804799988 1.011187788530321 0.8475516306860523 1.0212187942551505 0.5369379252191819 0.7830585242215244 0.987388649055847 1.0 17.882594826611413 5.501193028398418 0.6403115737259846 0.8297223469800808 2.0206436681053335 0.3297210889496619 0.14690956244086523 8.188794419556306 1.241533503776741 0.0611139032203312 8.897661742185994 317097.6535785652 -5.501193028398418 1.1909213211252525 VFS(ph)LSEADSHGGHWV ddPTM_BT-474_Trastuzumab_2h_R1 4 VFSLSEADSHGGHWV 15 0 H7BXG1 H7BXG1 CLEC16A 1 VFS(0.995)LS(0.005)EADSHGGHWV;VFS(0.999)LS(0.001)EADSHGGHWV;VFS(0.996)LS(0.004)EADSHGGHWV;VFS(0.986)LS(0.014)EADSHGGHWV 363.82 5.927599999999997e-85 724500000.0 808590.0 801090.0 789730.0 810290.0 754700.0 940670.0 879780.0 245753.0 1092260.0 689410.0 True False 804236.6412827948 827753.7963808688 900917.119543786 912872.6309190935 850806.5715426394 875643.6969989988 837221.6803140253 264092.33676844847 823087.1585341456 645411.2635664038 1.2460839881206227 1.282521460513223 1.3958806894157871 1.4144045548178936 1.318239422784885 1.3567220568175091 1.297190996772691 0.40918457993610313 1.2752909733647086 1.0 19.29985923005776 1.9039360495435163 11.108802918496504 0.8339116099661347 1.3377251556181156 0.4777275176825514 0.20597340706940404 0.4175626286312686 46.52190698428052 0.08062533292874166 0.05147365398848374 80.15600238872706 -1.9039360495435163 0.5038135456519809 VFS(ph)QENVCDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VFSQENVCDR 10 0 Q6NV74;C9JFM2;C9JXD6;C9JK00 Q6NV74 KIAA1211L Uncharacterized protein KIAA1211-like 1 VFS(1)QENVCDR;VFS(1)QENVCDR;VFS(1)QENVCDR 158.47 8.3693e-06 1668740000.0 881380.0 731090.0 616590.0 611460.0 692220.0 741680.0 700250.0 672700.0 884700.0 771770.0 True False 876634.7480105229 755423.8886967632 703400.512503644 688870.773305593 780370.113890614 690409.4073269233 666376.2322852265 722900.2899013854 666677.5393726397 722514.9778544604 1.2133101387236676 1.0455477212943423 0.9735445410314155 0.9534345922505644 1.080074652857657 0.9555641453650194 0.9223009248390388 1.0005332928156996 0.9227179502248766 1.0 19.462667969665876 4.718746647504183 2.149152476815152 0.9763625421560317 1.2714669800692928 0.7329649953454322 0.043355409930518736 0.3128367890311657 1.6852438145140187 0.010844223923865137 0.17495442686873053 52329.50751382935 -4.718746647504183 0.29510443791326113 VFSLS(ph)EADSHGGHWV ddPTM_BT-474_Trastuzumab_2h_R1 1 VFSLSEADSHGGHWV 15 0 H7BXG1 H7BXG1 CLEC16A 1 VFS(0.435)LS(0.564)EADSHGGHWV 58.09 0.07520800000000001 35953000.0 22041.0 22394.0 23363.0 23019.0 20657.0 28001.0 28164.0 11455.0 34489.0 21845.0 True False 21922.33370498532 23139.370752541137 26652.30732516364 25933.20303980877 23287.546506368486 26065.35677726402 26801.599723071926 12309.830267311385 25989.648078922775 20450.833397554565 1.0719530729543136 1.131463461792616 1.3032382009600951 1.2680756102051942 1.1387089246520938 1.2745376323089512 1.3105382652169453 0.6019231601966573 1.2708356463375483 1.0 14.319872015578103 1.771731529834685 24.99999999998235 0.9176574195235804 1.2158297305687777 0.3166591583462607 0.16963353959811858 30.685221222501685 23137.745489230467 0.07431264663507503 0.04122604450420166 59.11960583319454 -1.771731529834685 0.29817231104519737 VFSWGFGGYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFSWGFGGYGR 11 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 196.88 1.3718e-07 1692100000.0 352220.0 478680.0 505210.0 456180.0 353930.0 363980.0 413530.0 352830.0 567490.0 408030.0 False True 350323.68665532046 494612.5744318292 576339.1766359592 513932.34122681053 399000.8875925354 338818.9193167588 393525.97406199155 379159.96623443713 427639.6934764094 381989.1760679421 0.917103699799626 1.2948340042594702 1.508784051340369 1.3454107430923656 1.0445345381241051 0.8869856544220382 1.030201897637009 0.9925934816723662 1.1195073585026076 1.0 18.54317223349799 3.1706710491063097 5.956957006082734 1.0035230115932334 1.2854107848540914 0.41429045978074797 0.14761357359307214 0.19043664375244912 12.260856903992574 0.04423025709353792 0.05353135527558448 1481.395595627752 -3.1706710491063097 0.281887773260858 VFSWLQQEGHLSEEEMAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFSWLQQEGHLSEEEMAR 18 0 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 ; 212.76 1.5617e-16 311030000.0 92311.0 139220.0 133134.0 140729.0 133455.0 136733.0 136142.0 119922.0 143822.0 147597.0 False True 91814.00783271618 143853.85353973295 151878.10997852744 158545.2769707304 150449.7032002423 127280.96954486074 129556.29134705511 128871.18859157729 108378.995216064 138177.23309585082 0.6644655257282985 1.0410821690136491 1.0991543727986837 1.1474052086478723 1.0888168754680325 0.9211428445420414 0.9376095355534039 0.9326513905672281 0.7843477017728646 1.0 17.076160402713704 2.642417058968279 7.882160637416006 0.9141335629153838 1.0226718872179226 0.10294773578129157 0.13400393401075325 0.6431670794282617 47.18706307577347 0.04431312721306274 0.04173945283026912 438.9520271114717 -2.642417058968279 0.10853832430253874 VFTTQELVQAFTHAPATLEADR ddPTM_BT-474_Trastuzumab_2h_R1 4 VFTTQELVQAFTHAPATLEADR 22 0 O95433;O95433-2;G3V438;H0YJ63;H0YJG7 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 ;;; 264.8 1.6379999999999999e-37 2978534000.0 1547638.0 1774282.0 1598790.0 1831074.0 1779439.0 1713907.0 1848030.0 1715156.0 1984648.0 1874952.0 False True 1539305.6889667478 1833337.9037938814 1823885.7350682013 2062887.7806557543 2006040.0090887265 1595428.6431931113 1758633.7287398325 1843149.6501056945 1495558.0933207069 1755290.9581328342 0.876951870477452 1.0444638225357628 1.039078864172088 1.1752397920685023 1.1428532687382056 0.9089254609333975 1.0019043968702226 1.0500536344506206 0.8520285975332463 1.0 20.74327876171342 2.73233503445174 24.986588426200793 0.9759292789422601 1.0608080736709062 0.20335071372680513 0.08997658212494329 952.5519133090058 3823086.4096315545 0.030022033077821253 0.028959498198004766 539.9269860478302 -2.73233503445174 0.08487879472864612 VFTTVGSAEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 VFTTVGSAEKR 11 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 193.28 1.6367e-06 2165600000.0 965950.0 1144100.0 1223930.0 1019700.0 938880.0 1154510.0 1186200.0 957290.0 1602630.0 1267330.0 False True 960749.4325271337 1182180.676876945 1396248.7054097303 1148793.9154478032 1058440.8028222523 1074701.4411242127 1128818.9742759531 1028727.840820124 1207683.3106417705 1186447.9143841998 0.8097695827008049 0.9964033503236679 1.1768310167534182 0.968263251610215 0.8921089497397896 0.9058142612876633 0.9514273324521307 0.867065320228628 1.0178982962506133 1.0 20.17821733626226 3.4765466708713237 24.98390360104224 0.9276638749288875 1.0075424466716005 0.053332314402788406 0.0934077170255661 40.153722593173484 1745889.4634152935 0.025936446277085818 0.035436643933094716 2996.033539836329 -3.4765466708713237 0.07987857174271307 VFVDGHQLFDFYHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFVDGHQLFDFYHR 14 0 Q3ZCW2 Q3ZCW2 LGALSL Galectin-related protein 0 165.33 2.3019e-06 89791000.0 108950.0 137620.0 123150.0 125920.0 100390.0 118950.0 116640.0 67475.0 143140.0 121740.0 False True 108363.4253054829 142200.59850695313 140488.44956101116 141861.45908913153 113174.07144185188 110727.26647818148 110997.6775919296 72510.32713110748 107865.06497773215 113970.44897314238 0.950802828994902 1.2476970985738882 1.2326743539820384 1.2447214200460137 0.9930124208646561 0.9715436543052913 0.9739162966541149 0.6362204219112522 0.9464301136793013 1.0 16.7983002756117 2.702244883783 1.4278224532049668 0.836930260629451 1.174535425857454 0.4548576283198047 0.1301366362200941 0.30853430411531646 1.2744194010182122 0.0571533812874071 0.052837618770239535 503.7845955931161 -2.702244883783 0.3376051652280031 VFVGGLS(ph)PDTSEEQIK ddPTM_BT-474_Trastuzumab_2h_R1 5 VFVGGLSPDTSEEQIK 16 0 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 1 VFVGGLS(1)PDTSEEQIK;VFVGGLS(0.93)PDT(0.061)S(0.009)EEQIK;VFVGGLS(1)PDTSEEQIK;VFVGGLS(0.72)PDT(0.224)S(0.055)EEQIK;VFVGGLS(0.999)PDT(0.001)SEEQIK 242.9 5.9649e-20 954876000.0 1918470.0 1639950.0 1411080.0 1239743.0 1385800.0 1760150.0 1640370.0 1643640.0 2188150.0 1737110.0 True False 1908141.1706820526 1694534.7443792908 1609747.7986727683 1396694.3366862852 1562273.4157198772 1638474.9734474248 1561019.0362780658 1766296.7630348073 1648909.7522077993 1626246.1525853071 1.1733409285234009 1.0419915470271353 0.9898549466903822 0.8588455901745905 0.9606623285388071 1.00751966167156 0.9598909942362985 1.0861189495986547 1.0139361434223613 1.0 20.6331142131065 4.677156731616904 2.489612066861058 0.9875595473980359 1.200344777793794 0.5293201585476088 0.05393850197628095 0.39500920155896235 3.3781126575069615 0.015170250792714324 0.1678158330630179 47550.6799624581 -4.677156731616904 0.21278523039575803 VFVHYTGWLLDGTK ddPTM_BT-474_Trastuzumab_2h_R1 3 VFVHYTGWLLDGTK 14 0 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;; 256.95 2.4936e-24 2591918000.0 3722816.0 4968463.0 5280542.0 4579384.0 3722082.0 4654029.0 5398666.0 4384096.0 7932253.0 5293836.0 False True 3702772.772299737 5133835.287455695 6023996.414306138 5159133.544865184 4196067.080191558 4332306.929635842 5137511.900673123 4711259.50550841 5977455.534894589 4955978.854198981 0.7471324800271377 1.0358872461907347 1.2155008307192983 1.0409918396835127 0.8466676722473133 0.874157670379338 1.0366291002876933 0.9506213896608474 1.206109975596477 1.0 22.2407386012322 4.741272592554007 24.31198286945564 1.0155444835763667 0.747132340154817 0.3420206929017632 0.11435469210897395 213.84736328254044 1916911.8677049186 0.028485667349534324 0.19568037031933533 55115.352904606276 -4.741272592554007 -0.26841214342154973 VFVLDEADVMIATQGHQDQSIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFVLDEADVMIATQGHQDQSIR 22 0 Q9NUU7;I3L0H8;F6QDS0;H3BQK0;Q9UMR2;Q9UMR2-2;Q9UMR2-4;I3L352;Q9UMR2-3;Q9NUU7-2;H3BN59 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 359.99 1.4821999999999993e-96 174020000.0 112830.0 118870.0 134510.0 143710.0 126930.0 136660.0 139640.0 118530.0 132250.0 134560.0 False True 112222.53581659136 122826.51609156758 153447.83881812106 161903.67126508188 143093.78312694756 127213.0158630372 132885.0797233972 127375.31048314447 99658.75955920832 125972.26559738813 0.8908511352432019 0.9750282374385923 1.218108113642616 1.285232670042879 1.1359149765892154 1.009849392322708 1.054875683097601 1.0111377284444538 0.7911166722818281 1.0 16.94274661538903 1.5251067102362479 3.050566493452471 0.8949563720075618 1.0900228181542555 0.2705157503423079 0.11864177913377953 0.3006369934383908 6.00391382674564 0.09083846206530957 0.033787796211135555 33.50477534269348 -1.5251067102362479 0.19506644614669366 VFWDPSVNLFGHVGSTTASR ddPTM_BT-474_Trastuzumab_2h_R1 1 VFWDPSVNLFGHVGSTTASR 20 0 R4GMQ1;O60341;O60341-2;R4GMP9 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 196.62 1.7351e-21 180570000.0 47840.0 36516.0 48411.0 54334.0 40862.0 58694.0 48446.0 42015.0 47654.0 51668.0 False True 47582.434755523645 37731.41298561185 55226.848004044725 61212.678829009485 46065.533491950875 54636.621930814414 46102.481898307815 45150.37264784707 35910.31023088478 48370.50400479972 0.983707648586877 0.7800500276339447 1.1417463832620942 1.2654959895174023 0.9523476019059027 1.1295441934074724 0.953111464245507 0.9334277898648086 0.7424009935336102 1.0 15.561839949821067 1.7879396046299907 2.4032111494885386 0.8709580263820554 1.0397570937086322 0.19273104671961028 0.1362221517474651 0.4525830780419414 5.111562660604028 0.086730446383105 0.03978357305955665 61.367665799231716 -1.7879396046299907 0.1687990673265768 VFYELQHSDKPVGTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VFYELQHSDKPVGTK 15 1 Q93009;A0A669KBL1;Q93009-3;H3BND8;F5H2X1 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ; 238.32 5.4938e-18 1132660000.0 2226140.0 2028300.0 1738810.0 1647600.0 1604990.0 2248510.0 2171710.0 2146940.0 3040900.0 2315740.0 False True 2214154.7095874064 2095810.7393667568 1983619.3339925448 1856185.991067766 1809375.9629789616 2093075.7961232103 2066656.0905621534 2307155.564740423 2291510.9409723734 2167947.4905952387 1.0213138091178955 0.9667257848534533 0.9149757282395783 0.8561950873441706 0.8346032230154123 0.9654642491126613 0.9532777429008327 1.0642119215290418 1.0569955918734952 1.0 21.04789838322294 1.945659668928645 2.471090775280393 1.0464540147595087 0.9201383260759631 0.4678427407072827 0.05368625137777461 0.2572181112435215 2.878403475407908 0.03192220855091555 0.01681244338818829 88.23881536561984 -1.945659668928645 -0.1263156886835456 VGAEDADGIDMAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGAEDADGIDMAYR 14 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 306.68 2.6262999999999997e-44 1963800000.0 1608470.0 1828800.0 1678930.0 1658620.0 1733100.0 1769930.0 1765420.0 1668510.0 2146400.0 1874720.0 False True 1599810.176237817 1889670.5024670546 1915308.7504788323 1868601.1219378598 1953800.0121115004 1647578.905067066 1680019.8900406763 1793022.6887221062 1617448.480286462 1755073.7645714579 0.911534437202671 1.0766900745784105 1.091298148910852 1.064685234124118 1.1132295699198524 0.938751942126695 0.9572360569419669 1.0216224097908013 0.9215843304918866 1.0 20.743100236631804 2.728452010765687 24.961034544619725 0.9726385737396457 1.0558325483778275 0.343526652514515 0.057469751828431476 802.0922260668708 1980591.7939086433 0.018429411288523805 0.017570551170784626 535.1210200084804 -2.728452010765687 0.08319397463818179 VGDAIPAVEVFEGEPGNKVNLAELFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGDAIPAVEVFEGEPGNKVNLAELFK 26 1 P30044-2;P30044;P30044-3 P30044-2 PRDX5 Peroxiredoxin-5, mitochondrial 0 ; 241.48 3.6980999999999994e-45 2455700000.0 1021100.0 943880.0 910020.0 923180.0 860490.0 1252150.0 1203210.0 1001230.0 1846020.0 1111180.0 False True 1015602.5110548764 975296.4752124902 1038142.9059643632 1040054.493344223 970068.300976183 1165591.8177440506 1145006.1355914404 1075946.8667429232 1391093.1064006789 1040263.5410709402 0.9762934784865424 0.9375474932135301 0.997961444362076 0.9997990434938228 0.9325216761682411 1.1204774287716421 1.1006885182313213 1.0343021977250566 1.3372506595478328 1.0 19.988517637335537 2.731155521262352 24.699513106760712 1.1119413788438615 0.9704265210084057 0.4309410582933435 0.08584615744235433 487.0098712998529 1624405.5126551841 0.026513737716366108 0.02546859697697018 538.46257194854 -2.731155521262352 -0.1415148578354558 VGDDVEFEVSSDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGDDVEFEVSSDRR 14 1 O75534-2;O75534;O75534-3;O75534-4;E9PLD4 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;; 170.79 5e-06 2266970000.0 944110.0 971740.0 1036510.0 1058160.0 1026180.0 1072170.0 1045640.0 877150.0 1240850.0 967720.0 False True 939027.0166604826 1004083.7784707644 1182441.598493575 1192122.9475044108 1156857.9403546117 998053.4115167019 995058.3984672949 942607.3870774496 935059.1440381366 905959.2810932259 1.0365002448314826 1.1083100525877179 1.3051818367230767 1.3158681326889985 1.2769425342810385 1.1016537192624656 1.0983478167656195 1.0404522661769082 1.032120497634061 1.0 19.78908668333413 2.4010448574708945 2.3005188532905727 1.0416678312273928 1.2129472064089803 0.45993744896633426 0.08453507707796497 0.30426117413057224 3.2946969073320314 0.03816413480040629 0.030034370043824473 251.7936987365695 -2.4010448574708945 0.17127937518158753 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGDPPQPLPEEPMEVQGAERASPEPQR 27 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR 216.19 2.2593000000000003e-34 6059330000.0 298930.0 377891.0 325178.0 352675.0 383036.0 434369.0 395588.0 324816.0 380230.0 376200.0 True False 297320.59409424505 390468.8734950667 370960.2359021558 397323.6188394172 431813.3641677571 404342.09342464246 376451.8971470874 349055.4193022276 286527.411320966 352190.59391897614 0.8442036761567963 1.1086862631683365 1.0532939899794649 1.1281494330050854 1.226078639303748 1.1480774910123355 1.0688868574204249 0.9910980739665359 0.8135578186022867 1.0 18.425996853544444 1.579621085661039 3.1851902922622783 0.9051753590751896 1.0924446008757212 0.3189304343643826 0.10220576946254252 0.22710525217881147 5.316446919274076 0.06772788765792956 0.027216190990420074 37.985783238528725 -1.579621085661039 0.1872692418005315 VGDPQELNGITR ddPTM_BT-474_Trastuzumab_2h_R1 3 VGDPQELNGITR 12 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 161.99 0.00014863 564480000.0 424839.0 458229.0 413583.0 418094.0 393206.0 495909.0 462843.0 420664.0 508887.0 503921.0 False True 422551.71402804984 473480.8752597199 471811.89147212025 471024.65753185586 443278.45338544424 461627.97807421954 440453.51585803763 452056.0837685096 383478.6175864414 471760.33035152697 0.8956914917224815 1.003647074155029 1.0001092951595885 0.9984405793104246 0.9396263841326807 0.9785222460952632 0.9336383064040984 0.95823250639083 0.8128674517857332 1.0 18.84769458396098 1.4303689477126347 19.278809365092734 0.8994701818582655 0.9655201053167523 0.15454614410531453 0.052983151617640424 11.871305962976596 4895.9144371402 0.02907122452917199 0.012123395641329146 26.93822324442981 -1.4303689477126347 0.0660499234584867 VGDQVWLFIDEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGDQVWLFIDEPR 13 0 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;; 184.55 2.1887e-05 1834520000.0 1097510.0 1240520.0 1140630.0 1127450.0 1144560.0 1157560.0 1129340.0 1107550.0 1483440.0 1196450.0 False True 1091601.1281048232 1281809.9582898247 1301220.7894663112 1270185.0543999479 1290312.9316613793 1077540.6018031405 1074709.5097022464 1190201.0050249423 1117866.089077594 1120091.5366676194 0.9745642140573993 1.144379647848544 1.1617093307727053 1.1340011176040765 1.1519709679265902 0.9620111986641091 0.9594836444346425 1.0625926239617036 0.9980131556063299 1.0 20.095185207053635 2.740722423216624 24.98519035005063 1.0023338264957815 1.1188869977499363 0.5158894797438391 0.05634977732391412 164.43650853567723 1900492.903748321 0.017959009196203003 0.018248737605315635 550.4557633609564 -2.740722423216624 0.11655317125415476 VGDSTPVSEKPVSAAVDANASES(ph)P ddPTM_BT-474_Trastuzumab_2h_R1 4 VGDSTPVSEKPVSAAVDANASESP 24 1 Q9H8Y8;Q9H8Y8-3;Q9H8Y8-2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 1 VGDSTPVSEKPVSAAVDANASES(1)P;VGDSTPVSEKPVSAAVDANASES(1)P;VGDSTPVSEKPVSAAVDANAS(0.004)ES(0.996)P;VGDSTPVSEKPVSAAVDANASES(1)P 273.22 3.6104e-52 2750080000.0 6472100.0 6261800.0 5865200.0 5491680.0 5601200.0 7171200.0 7090600.0 6423300.0 8573400.0 6992800.0 True False 6437254.932717901 6470220.227661973 6690969.178767704 6186926.124925358 6314479.6190865645 6675471.823189019 6747600.589277584 6902639.2628565 6460600.447674223 6546513.517162719 0.9833104164287786 0.9883459662458909 1.022066044960615 0.9450719239646194 0.9645561110554739 1.0196987764079637 1.030716666449658 1.0543992989184459 0.9868765153752053 1.0 22.642295343049156 2.6343452601866915 5.810960109256077 1.0260014512136326 0.9815340993047798 0.339997720885549 0.02521761137964278 0.23719967784457602 11.096584032175878 0.008498188250555443 0.00799370266068063 430.8690113394507 -2.6343452601866915 -0.04446735190885287 VGDTEKPEPERS(ph)PPNR ddPTM_BT-474_Trastuzumab_2h_R1 8 VGDTEKPEPERSPPNR 16 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDT(0.004)EKPEPERS(0.996)PPNR;VGDTEKPEPERS(1)PPNR;VGDT(0.02)EKPEPERS(0.98)PPNR;VGDT(0.007)EKPEPERS(0.993)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR 168.64 3.0808000000000004e-09 16286791000.0 8158773.0 6944178.0 6209800.0 6143403.0 6077467.0 7849781.0 7849822.0 7261751.0 10853878.0 8076707.0 True False 8114847.072692893 7175310.76688575 7084085.863450809 6921157.189902695 6851396.398480889 7307144.115866874 7470096.12062789 7803659.734044408 8179085.201413842 7561244.64444325 1.0732157805073117 0.9489589484660937 0.9368941485919114 0.9153462842905162 0.9061201853210731 0.9663943516543783 0.9879453015870416 1.0320602097935436 1.0817114887857309 1.0 22.850192303052125 1.904105708971307 2.145559715980118 1.0442473522173332 0.9521442285171062 0.36609984630689896 0.046843623305593614 0.3166842133922218 2.6876757602885197 0.028569947440966307 0.013947225699349551 80.18732187058957 -1.904105708971307 -0.092103123700227 VGDTEKPEPERS(ph)PPNRK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGDTEKPEPERSPPNRK 17 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 VGDTEKPEPERS(1)PPNRK 125.09 0.00026568 256760000.0 216090.0 153180.0 127780.0 118240.0 144550.0 203950.0 191020.0 177670.0 295380.0 188930.0 True False 214926.5954498562 158278.50370073476 145770.31331632982 133209.17187657976 162957.58568502517 189851.4165466592 181779.63283273674 190928.6375899794 222587.55688921726 176872.32564888903 1.2151510682146458 0.8948743288135135 0.8241555753934049 0.75313744752254 0.9213289025696075 1.0733811287331354 1.0277449124154632 1.0794715164711164 1.258464579309473 1.0 17.43234880865834 2.7361645557676213 4.414814429797477 1.0881988497081183 0.9041046421369304 0.28949123643344765 0.12906251819074654 0.2587573161012145 13.247768744583384 0.042776676680247955 0.04267048934320582 544.7090059806073 -2.7361645557676213 -0.18409420757118788 VGDTITVAAWNHSAS(ph)MEEEGEDCTLSVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGDTITVAAWNHSASMEEEGEDCTLSVYR 29 0 Q86V48 Q86V48 LUZP1 Leucine zipper protein 1 1 VGDT(0.005)IT(0.005)VAAWNHS(0.194)AS(0.797)MEEEGEDCTLSVYR 52.465 0.049159 49300000.0 19410.0 19179.0 19015.0 22200.0 19880.0 15757.0 21075.0 11080.0 25184.0 20487.0 True False 19305.498716653725 19817.361421049667 21692.14671865713 25010.517723782716 22411.600162008315 14667.755677988262 20055.52173568173 11906.845863099974 18977.740648310795 19179.502120196863 1.0065693361416395 1.0332573440569717 1.131006768721819 1.3040233039962772 1.1685183495148141 0.7647620666097723 1.045674783943551 0.6208109985587967 0.9894803592595032 1.0 14.227277649538138 2.745497638594737 24.836693744059104 0.8545957927643557 1.1332451622122293 0.4264581894567434 0.13965370375913197 434.88098293584846 1557009.3498404354 0.04348241358583616 0.04520560568446666 556.5416081459992 -2.745497638594737 0.27864936944787355 VGDVYIPR ddPTM_BT-474_Trastuzumab_2h_R1 8 VGDVYIPR 8 0 Q01130;Q01130-2;J3KP15;J3QL05;Q9BRL6-2;Q9BRL6 Q01130;Q9BRL6-2 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 0 ;;;;;;; 151.29 0.0011062 8784890000.0 4782670.0 5593860.0 5059460.0 5337610.0 5076040.0 5448470.0 5364180.0 4950040.0 6264080.0 5313550.0 False True 4756920.636124595 5780048.248540217 5771787.990385328 6013350.878722519 5722443.605953762 5071830.093218806 5104694.120242438 5319437.120593811 4720381.418371613 4974434.689840978 0.9562736135302771 1.1619507761041672 1.160290234018499 1.2088511064389413 1.1503706376204723 1.019579190290051 1.0261857755751587 1.069355103094913 0.9489282124885057 1.0 22.246101151964744 2.734883585593937 24.40287035934387 1.0224895084713659 1.1357945144246713 0.4048302054196993 0.06870024249138514 240.56948402750473 1596550.315154029 0.022015123508416435 0.02149251056374462 543.1047305421184 -2.734883585593937 0.1133050059533054 VGEAWQDRPGAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGEAWQDRPGAPR 13 1 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;O15231-2;H7BZT5;O15231-9;H7C1R1;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 0 ; 98.592 0.0029627 537150000.0 151878.0 181479.0 180628.0 197743.0 164799.0 205740.0 180436.0 170200.0 210360.0 195691.0 False True 151060.30572323196 187519.41880862787 206058.85235327898 222777.2435249534 185785.17580979914 191517.67805986587 171707.6213475431 182901.1882580882 158519.59667958456 183201.83284050607 0.8245567382218482 1.0235673732144408 1.1247641421397352 1.2160208228860971 1.0141010760058393 1.0453917141025522 0.9372592985848034 0.9983589433699628 0.8652729845644631 1.0 17.48307441136884 2.2492295161993674 20.031915022976193 0.9548000657282267 1.0510756994769717 0.16406845480633458 0.09918016426728479 34.65266329785937 65063.42498685134 0.03624600583684731 0.029875540822999883 177.51273533766198 -2.2492295161993674 0.09627563374874493 VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK ddPTM_BT-474_Trastuzumab_2h_R1 7 VGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 32 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK 286.02 6.9046e-74 6520425000.0 2905779.0 2019901.0 1844101.0 1666101.0 1723483.0 2691562.0 2402357.0 1767508.0 3945093.0 2260256.0 True False 2890134.6087264 2087132.183729059 2103734.3915867656 1877029.215770814 1942958.3441659263 2505500.654195431 2286145.8140150486 1899408.4221837656 2972877.691687835 2116004.5269774836 1.3658451916710639 0.9863552544995421 0.9942012716729653 0.8870629489871538 0.9182203154079553 1.1840714999671134 1.0804068634392743 0.8976391108656532 1.4049486443841948 1.0 21.01291128327941 2.7372370236567742 24.98812736560944 1.086994794851897 1.0179263616822218 0.041036494200035856 0.17425821952881373 518.938463451774 9796908.375556624 0.05530652667153876 0.054803011059081315 546.0557990925727 -2.7372370236567742 -0.06906843316967515 VGEEFEEQTVDGRPCK ddPTM_BT-474_Trastuzumab_2h_R1 6 VGEEFEEQTVDGRPCK 16 1 P29373 P29373 CRABP2 Cellular retinoic acid-binding protein 2 0 ;;;;; 263.99 5.0748e-27 10498010000.0 4459890.0 3281812.0 3160449.0 2838283.0 2370098.0 4213240.0 4070421.0 3515505.0 5637720.0 4001690.0 False True 4435878.447780366 3391045.1285227537 3605412.748084842 3197609.3367842855 2671915.931628552 3921988.6357001495 3873519.185711768 3777849.8344726763 4248379.447577613 3746298.7181808264 1.1840696061563383 0.9051721134959091 0.9623932898323716 0.8535382726599602 0.7132148642236446 1.0468969323419668 1.033958975805517 1.0084219435408959 1.1340204738506794 1.0 21.83703450949669 VGEEQGQENPPDHDPIHDQSWYLDQTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGEEQGQENPPDHDPIHDQSWYLDQTLR 28 0 Q7LBC6;Q7LBC6-2;Q7LBC6-3 Q7LBC6 KDM3B Lysine-specific demethylase 3B 0 ; 217.84 1.8013999999999995e-34 145538000.0 75251.0 74322.0 68279.0 60778.0 58777.0 80768.0 76219.0 42270.0 77515.0 71581.0 False True 74845.85697717214 76795.76284140232 77892.08970829292 68472.4885682913 66261.90255142674 75184.69826742115 72531.99578514473 45424.40204271083 58412.466897784776 67012.63929642261 1.116891645561074 1.145989229012533 1.1623492303257348 1.0217846855040467 0.9887970873423583 1.1219480243846296 1.0823629176028702 0.6778482763793451 0.87166342813934 1.0 16.03214560841145 1.7605536712536194 24.999999999999996 0.8206477323621756 1.0908169574957058 0.5994082519851511 0.08956359803234988 6.437523675653696 7323.573691703746 0.04051269666339909 0.02246695966038115 57.61740192599578 -1.7605536712536194 0.27016922513353026 VGEFCHNR ddPTM_BT-474_Trastuzumab_2h_R1 6 VGEFCHNR 8 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;;;;; 178.65 0.0002485 12776210000.0 8975190.0 10069250.0 9540930.0 8794520.0 7819650.0 9167750.0 9683330.0 8263950.0 12637300.0 9738160.0 False True 8926868.574277345 10404398.899259847 10884210.012749791 9907905.330277553 8815436.076803247 8534005.021062186 9214910.333987134 8880647.912487822 9523006.746144285 9116662.291541781 0.9791816663604483 1.141250883989944 1.193881013103655 1.0867908685692864 0.9669587174444308 0.9360887513602242 1.0107767557142602 0.9741117558700263 1.0445716251856232 1.0 23.12007430415291 3.321458449134826 5.16204587614362 0.9858153825568832 1.1128067882001393 0.4757749814365152 0.057160792750031594 0.16539305554817674 7.543975041287379 0.016076558711130378 0.021784733568538123 2096.324206130812 -3.321458449134826 0.12699140564325617 VGEGDKEDATR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGEGDKEDATR 11 1 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 ; 67.51899999999999 0.054492999999999986 1086880000.0 1382200.0 1051400.0 830650.0 920490.0 865190.0 1247650.0 1142730.0 1159830.0 1739610.0 1174050.0 False True 1374758.3887768558 1086395.2134152788 947598.2998607698 1037023.9396200334 975366.8181171017 1161402.8921521914 1087451.7842474782 1246382.4040974062 1310906.4250797315 1099121.123845225 1.250779699299497 0.9884217397392699 0.8621418325085415 0.9435028743620654 0.8874061256368411 1.0566650635273722 0.9893830267250965 1.1339809390042421 1.1926860440035811 1.0 20.067918950281012 1.750609643328654 5.930481028105738 1.121857552661696 0.9870993565982394 0.17058058585997005 0.11041973721335074 0.24084440181622382 22.044054688385877 0.05522797894567951 0.029163742657942346 56.31312693120695 -1.750609643328654 -0.13475819606345663 VGEGDKEDATRR ddPTM_BT-474_Trastuzumab_2h_R1 3 VGEGDKEDATRR 12 2 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 ;; 160.38 3.837e-05 647640000.0 1014240.0 865360.0 794570.0 758470.0 742370.0 1143780.0 1054610.0 950680.0 1653220.0 1095790.0 False True 1008779.4445326572 894162.9844788329 906438.5494737518 854492.2242323197 836906.4191282745 1064713.1807685108 1003594.4852985676 1021624.5690552233 1245806.0830130398 1025855.7440469824 0.9833540928016258 0.8716264344842249 0.8835926052310904 0.8329555390130813 0.8158129678415542 1.0378780710124373 0.9782998156635605 0.995875467855678 1.2144066943548586 1.0 19.968396442588737 2.2101255626171685 1.2034069897572268 1.0740040785692302 0.8792882996608501 0.5165575327386807 0.07777244494823256 0.39117475961398157 1.086125133373206 0.051734918456985385 0.028660804893911172 162.2279060630559 -2.2101255626171685 -0.1947157789083801 VGELKDDDFER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGELKDDDFER 11 1 P36507;A0A1B0GUL7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 0 ;; 138.89 4.3813e-05 1863590000.0 2730550.0 2109830.0 1844490.0 1740930.0 1710300.0 2569980.0 2485750.0 2256170.0 3806140.0 2240130.0 False True 2715849.0221926244 2180054.4161308333 2104178.159405518 1961331.5594984232 1928096.567257688 2392323.3316821908 2365504.7760128565 2424536.8619991243 2868167.7966630263 2097162.9855282186 1.2950109461847934 1.0395255071611598 1.0033450780534028 0.9352308680979399 0.9193832718595558 1.1407426834207783 1.1279546665358724 1.1561032112096186 1.3676418172813654 1.0 21.000007557261263 2.541304268153958 9.425940400270028 1.1674531578385354 1.0306078765247118 0.18178055195266307 0.12728161159484633 0.7827948805185589 111.23652595805612 0.04154799189091112 0.03909515108909456 347.7797317433126 -2.541304268153958 -0.13684528131382367 VGEPVALSEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGEPVALSEEER 12 0 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3;E9PIL8 Q13435 SF3B2 Splicing factor 3B subunit 2 0 ;; 157.97 0.00048301 217930000.0 172169.0 182923.0 175528.0 169404.0 158250.0 202744.0 188155.0 142143.0 218631.0 185764.0 False True 171242.06123377435 189011.48147571148 200240.8166832736 190850.52903061663 178402.19947876342 188728.78448804037 179053.22382809958 152750.432447529 164752.3195553064 173908.38247943795 0.9846682419349231 1.0868451467430515 1.1514155547214584 1.0974199535964395 1.0258401402810862 1.085219595497961 1.0295836306180925 0.8783385266986163 0.9473512271600012 1.0 17.40796794744967 1.9362299385837636 5.142832532961137 0.9320627099737709 1.0742064616067664 0.5725195778280225 0.04994537334611439 0.1411424930094126 7.30232248595582 0.022658745725472156 0.013681280482981626 86.34355754587234 -1.9362299385837636 0.14214375163299542 VGEVCHITCKPEYAYGS(ph)AGSPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGEVCHITCKPEYAYGSAGSPPK 23 1 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 1 VGEVCHITCKPEYAYGS(0.5)AGS(0.5)PPK 169.13 5.3421e-12 71746000.0 123570.0 87340.0 77203.0 69944.0 73126.0 106600.0 100000.0 98008.0 168170.0 107910.0 True False 122904.71284991753 90247.05910185518 88072.51133949435 78798.90322848009 82438.16264824045 99230.99290940841 95162.61796290272 105321.85463454 126726.75686254857 101023.09141360103 1.2166001963524402 0.8933309982801116 0.8718057436879911 0.7800088289306812 0.8160328643154309 0.9822605061959988 0.9419887733715769 1.0425522834511103 1.25443356651712 1.0 16.62432556999042 1.6121526363516498 2.980949429878128 1.1326391070505055 0.915845572954759 0.28376599379599776 0.12642444745616052 0.25182395966660714 5.240227215446913 0.08330583473136495 0.03398394625650801 40.940452301936666 -1.6121526363516498 -0.21679353409574653 VGEVCHITCKPEYAYGSAGSPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGEVCHITCKPEYAYGSAGSPPK 23 1 Q02790;F5H1U3 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ; 195.71 1.9665e-24 6966100000.0 4037300.0 3496000.0 3359000.0 3188300.0 3150700.0 4562600.0 4280500.0 4348200.0 6046000.0 4680800.0 False True 4015563.6253861985 3612362.246623374 3831918.0030486113 3591938.453096236 3551922.9693380073 4247198.201205128 4073435.8619020497 4672684.763712212 4556044.312249327 4382067.336565508 0.9163628299088256 0.8243511496230457 0.8744543861920475 0.8196903829212849 0.8105587378129759 0.9692224867849509 0.9295694358486625 1.0663197082166427 1.0397020315575927 1.0 22.06318022284052 2.2766869729950847 1.5323547007677754 1.0366469426981932 0.8492026673586984 0.7556186429907186 0.0435689553728106 0.17401414373375484 0.8125409310055994 0.023047269276771778 0.014383090803543368 189.09801630749715 -2.2766869729950847 -0.18744427533949481 VGEVTYVELLMDAEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGEVTYVELLMDAEGK 16 0 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 169.62 1.2936e-08 52487000.0 81890.0 83667.0 68572.0 67310.0 69038.0 93706.0 85674.0 83954.0 120193.0 92409.0 False True 81449.11333883432 86451.80551723052 78226.3415614913 75831.43909855014 77829.58007971477 87228.32478019717 81529.62131353727 90219.07378977393 90573.0456536856 86511.37850467482 0.9414844006263643 0.9993113855255342 0.9042318237625143 0.8765487316151416 0.8996455891118309 1.008287306108336 0.9424150062425793 1.0428578916344369 1.0469495136849691 1.0 16.400602276838377 2.0849376565022535 1.4013400490868475 1.0328983278344424 0.9287283557967722 0.5002024825455371 0.04115629410570701 0.35809052614572995 1.3256007120164996 0.028498674719795166 0.014471320352393117 121.60114282064882 -2.0849376565022535 -0.1041699720376702 VGFGDDFDEDELMAELEELEQEELNKK ddPTM_BT-474_Trastuzumab_2h_R1 3 VGFGDDFDEDELMAELEELEQEELNKK 27 1 Q96CF2 Q96CF2 CHMP4C Charged multivesicular body protein 4c 0 ;; 188.98 1.2541e-17 109393000.0 81045.0 59105.0 53115.8 48311.6 51792.5 76221.0 67644.0 75485.0 122311.0 67838.0 False True 80608.66272494599 61072.274195273036 60594.04294919 54427.84360650006 58387.96787680162 70952.0216749345 64371.80129482585 81118.07400506333 92169.09293343156 63508.520760966196 1.2692574438686963 0.9616390598221817 0.9541088695366449 0.8570163964510518 0.9193721909625742 1.1172047596886125 1.0135931450381104 1.2772785924329129 1.451287037220379 1.0 15.954662546787077 1.743588860170978 4.893952801988822 1.2739570403443887 1.0021332594259125 0.3238110372439674 0.14940736905845758 0.17451780263087158 9.775561971684022 0.07514072833683434 0.038609961022754415 55.41009058771735 -1.743588860170978 -0.27182378091847625 VGGS(ph)DEEASGIPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 VGGSDEEASGIPSR 14 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;H7C446 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR 234.54 3.4144e-17 8393570000.0 3603070.0 3531270.0 3304320.0 3130840.0 2887670.0 3769860.0 3665560.0 3219260.0 4559660.0 3591340.0 True False 3583671.471458712 3648806.1872522025 3769539.534335685 3527204.0229877466 3255397.657938961 3509258.4514958938 3488242.8590009795 3459497.5282710516 3435992.88931372 3362137.606499134 1.0658907786913139 1.0852637858126115 1.121173484109939 1.0490956753731713 0.9682523557769197 1.0437581271844345 1.0375074631859444 1.0289577444967504 1.0219667638444723 1.0 21.680947342128835 3.483057600383491 24.968036620372477 1.0204620434464946 1.0893764310751142 0.6598832590399992 0.02373138002867338 158.03607506463558 664693.892937179 0.006487089705395382 0.00908834404221233 3041.2883643483196 -3.483057600383491 0.06891438762861957 VGGS(ph)SVDLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGGSSVDLHR 10 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 VGGS(0.666)S(0.334)VDLHR;VGGS(0.562)S(0.438)VDLHR 128.28 0.00021495 593110000.0 123532.0 158104.0 120254.0 156464.0 126859.0 154322.0 120546.0 137410.0 202810.0 149493.0 True False 122866.91743769549 163366.39606411356 137184.7179334944 176272.32635738447 143013.7416977975 143654.0833749132 114714.72944956078 147664.23195384193 152830.1930147678 139952.2287526034 0.8779204056470584 1.1673011392544514 0.9802253179976061 1.2595178221061767 1.0218754140072037 1.0264508443724296 0.8196706152664742 1.0551045400989734 1.0920168573015658 1.0 17.094574936586834 3.013323376784307 24.993679810725396 0.9947660707668011 1.080238338995041 0.07753733574840216 0.11638058195893305 533.6706742922513 1001120.1165596574 0.03262084615736449 0.03896971049246949 1031.1536342986726 -3.013323376784307 0.08547226822823983 VGGSEVTELSGSGHDSSYYDDRS(ph)DHER ddPTM_BT-474_Trastuzumab_2h_R1 1 VGGSEVTELSGSGHDSSYYDDRSDHER 27 1 Q9H8M2 Q9H8M2 BRD9 Bromodomain-containing protein 9 1 VGGSEVTELSGSGHDS(0.331)S(0.331)YYDDRS(0.337)DHER 181.63 1.0087e-17 661100000.0 44937.0 78928.0 85763.0 111260.0 86824.0 122570.0 92414.0 77653.0 70619.0 90641.0 True False 44695.06418497006 81555.07076701641 97837.68493464055 125345.50459225525 97880.5217538336 114097.02439874469 87943.58176423692 83447.86117394424 53215.89369611896 84856.21377833576 0.5267152774659968 0.9610972153442681 1.1529819747816632 1.477151748953671 1.1534867913093598 1.3445924501980815 1.036383522766713 0.983403070421331 0.6271301926707606 1.0 16.372732687625657 1.556383800699801 3.1130945928510583 0.8116969264203645 1.117292620061799 0.15336260308758898 0.25242553934737816 0.3720278874962421 8.107646965428772 0.17897302917356045 0.06952078649056828 36.0067398312846 -1.556383800699801 0.30559569364143446 VGGSS(ph)VDLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGGSSVDLHR 10 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 1 VGGS(0.054)S(0.946)VDLHR 81.676 0.013073 401170000.0 202750.0 198940.0 204990.0 203820.0 233340.0 199690.0 181350.0 158170.0 167310.0 162910.0 True False 201658.41652764243 205561.59763823057 233850.81019497878 229623.59110186464 263054.46588546364 185885.90031969745 172577.40767572387 169973.44857098567 126078.692339139 152512.94432573213 1.3222380396574538 1.3478304975818898 1.5333177864268879 1.5056006696155713 1.7248009147580323 1.2188204820352067 1.1315590846317851 1.114485392190462 0.8266753546496636 1.0 17.21857216906003 2.38022872221328 2.482728127212449 1.0274164163265116 1.482191721250144 0.7359951664626452 0.13158222116652016 0.16002473020364508 2.019371442439618 0.0552656202678246 0.0434253240873677 240.00966027663088 -2.38022872221328 0.4547753049236325 VGGSSVDLHR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGGSSVDLHR 10 0 O60716-13;O60716-5;O60716-19;O60716-21;A0A669KB05;O60716-3;O60716-11;O60716-7;O60716-15;O60716-16;O60716-24;O60716-23;O60716-8;A0A669KB62;O60716-17;O60716-2;O60716-9;O60716-10;O60716;C9JZR2;O60716-18;O60716-14;O60716-22;O60716-12;O60716-4;O60716-6;O60716-20 O60716-13 CTNND1 Catenin delta-1 0 ;;; 190.96 8.4414e-07 2350480000.0 1935390.0 2799050.0 2637390.0 2758630.0 2622770.0 2822870.0 2930210.0 2466730.0 3140360.0 2816030.0 False True 1924970.0752820452 2892214.6871885452 3008711.5873951674 3107872.275151293 2956764.2131242766 2627731.641221221 2788464.5478107715 2650809.918401137 2366460.3566680932 2636308.5544754225 0.7301763187067757 1.097069871536355 1.1412592741800083 1.1788727347090457 1.1215546860419072 0.9967466201027034 1.0577155481580665 1.0055006322765585 0.8976416484522526 1.0 21.330087803084503 1.5234649066028054 3.5370353508010717 0.9481497822677696 1.0576458294793973 0.08777728504205118 0.11992913453574612 0.4469713247763579 12.111240853641377 0.08103789903716795 0.03161399060101145 33.378353251990156 -1.5234649066028054 0.10949604721162776 VGGTNPNGGS(ph)FEEVLSSTAHASAQSLAGGSR ddPTM_BT-474_Trastuzumab_2h_R1 5 VGGTNPNGGSFEEVLSSTAHASAQSLAGGSR 31 0 Q16890-5;E9PPQ1;J3KNE7;Q16890 Q16890-5 TPD52L1 Tumor protein D53 1 VGGTNPNGGS(0.999)FEEVLSSTAHASAQSLAGGSR;VGGTNPNGGS(1)FEEVLSSTAHASAQSLAGGSR;VGGTNPNGGS(1)FEEVLSSTAHASAQSLAGGSR;VGGTNPNGGS(1)FEEVLSSTAHASAQSLAGGSR;VGGTNPNGGS(1)FEEVLSSTAHASAQSLAGGSR 397.69 5.187999999999996e-156 4366320000.0 596168.0 755241.0 816333.0 1043251.0 968728.0 1068226.0 898578.0 959802.0 1017310.0 1261953.0 True False 592958.2977284914 780378.7401321747 931265.5907063656 1175326.4696330663 1092089.7686992963 994382.0509535258 855110.349238691 1031427.2990158005 766607.5817556013 1181414.07912768 0.5019055623294363 0.6605463350397707 0.7882634947045694 0.9948471838941444 0.9243920383153568 0.8416879979014191 0.7238024028544491 0.8730446989233231 0.6488898306693965 1.0 20.172083279360574 4.417419729258267 2.220291739146556 0.849732646378723 0.5032010579322191 0.5454228167930644 0.103886490613105 0.27643070618821036 2.3793511664943305 0.026774229034577553 0.14458216413451414 26146.8713029345 -4.417419729258267 -0.3465315884465039 VGGVS(ph)PEEHPAPEVSTPFPPLPPEPEGGGEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 VGGVSPEEHPAPEVSTPFPPLPPEPEGGGEEK 32 0 Q8TE77;Q8TE77-3 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 1 VGGVS(1)PEEHPAPEVSTPFPPLPPEPEGGGEEK;VGGVS(1)PEEHPAPEVSTPFPPLPPEPEGGGEEK;VGGVS(1)PEEHPAPEVSTPFPPLPPEPEGGGEEK;VGGVS(0.999)PEEHPAPEVS(0.001)T(0.001)PFPPLPPEPEGGGEEK;VGGVS(0.994)PEEHPAPEVS(0.003)T(0.003)PFPPLPPEPEGGGEEK 259.81 1.7097e-59 1932630000.0 1018134.0 755613.0 731999.0 680303.0 718805.0 989708.0 989537.0 925131.0 1386150.0 988021.0 True False 1012652.4796693213 780763.1219272955 835058.096550633 766429.2900469626 810340.5560589734 921291.8154820335 941669.3149115681 994168.9729400313 1044551.9059583858 924964.6538926638 1.0948012720352374 0.8441004946961984 0.902800007585518 0.8286038680737543 0.87607732106162 0.9960292121486228 1.0180597830939848 1.0748183390101718 1.129288456118237 1.0 19.81903871073811 2.3800980332945487 2.011487274698825 1.0689329576137112 0.9017209602096913 0.4517285298908532 0.0757242326158477 0.2723781385076442 2.254267498894303 0.0324241643152971 0.024309213503568204 239.93744687003516 -2.3800980332945487 -0.16721199740401993 VGGYILGEFGNLIAGDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGGYILGEFGNLIAGDPR 18 0 O95782-2;O95782;O94973-3;O94973;O94973-2;A0A0G2JQM1;A0A0G2JS82 O95782-2;O94973-3 AP2A1;AP2A2 AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2 0 66.706 0.072969 89360000.0 38076.0 45367.0 39910.0 59311.0 53468.0 51924.0 52636.0 53468.0 62693.0 53730.0 False True 37871.00304664127 46877.013170069375 45528.98109606135 66819.76651870627 60276.832870335056 48334.61609594863 50089.79559095348 57458.05366500267 47243.15019316029 50300.905399432675 0.7528890930672673 0.9319317972077314 0.9051324371703029 1.3284008704833352 1.1983250081024366 0.9609094649913354 0.9958030614597729 1.142286668773376 0.9392107322524085 1.0 15.618296747841002 3.974679707929554 24.463880910324672 1.087035606300567 0.8614407579526168 0.4117256781667503 0.12004425146094355 530.2869817720124 512352.9072742506 0.031540672817297784 0.057186915561536364 9433.648883057122 -3.974679707929554 -0.2255948483479503 VGHDGHPEYQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGHDGHPEYQIR 12 0 A0A669KBH4;Q14999;Q14999-2 A0A669KBH4 CUL7 Cullin-7 0 102.66 0.0013474 160100000.0 41290.0 41434.0 39786.0 46752.0 48284.0 37343.0 42637.0 23226.0 44603.0 37372.0 False True 41067.69922775028 42813.105642618066 45387.522973888656 52670.79840640942 54432.68119831037 34761.566305966604 40574.48542084282 24959.24205923827 33611.18829957933 34986.886964221056 1.1738026098105756 1.223690055259858 1.2972724043812098 1.5054439813485725 1.5558023568651689 0.9935598540537524 1.1597055051607152 0.7133884785108934 0.9606795921555247 1.0 15.094526682850276 2.3720779043435485 2.03632177947332 0.8945029490236835 1.3430691133362669 0.577879657735551 0.15802023796762665 0.2213346944468669 1.8783527731546945 0.07125249682888334 0.05321149654257077 235.5471773779115 -2.3720779043435485 0.44856616431258334 VGHFDPVTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGHFDPVTR 9 0 Q9UNE7;Q9UNE7-2;H3BTA3 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 ; 119.68 0.00078785 1717290000.0 369740.0 428540.0 367770.0 409970.0 395600.0 422660.0 393070.0 327210.0 430840.0 400630.0 False True 367749.3609219762 442803.6948420994 419548.8192858553 461872.1599648289 445977.315095095 393442.509034621 374055.70242678147 351628.0717387133 324665.2549602217 375061.4504034007 0.9805042894342783 1.1806163879701257 1.118613546752421 1.2314572971124016 1.189077988728034 1.049008125499036 0.9973184448160762 0.9375212284827369 0.8656321640387864 1.0 18.516767461856688 2.291223158442448 1.977814795310663 0.933048940353681 1.1449797990724002 0.6175309641211417 0.0706592247677825 0.20763154781158905 1.6537217448815889 0.03286372486536869 0.022575222101407597 195.5343934156909 -2.291223158442448 0.2119308587187192 VGHSELVGEIIR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGHSELVGEIIR 12 0 P38606;P38606-2;C9JVW8;C9JA17 P38606 ATP6V1A V-type proton ATPase catalytic subunit A 0 ;;; 210.91 3.8024e-08 1887870000.0 1054090.0 1271450.0 1153740.0 1194870.0 1099480.0 1148670.0 1156950.0 985600.0 1279320.0 1161910.0 False True 1048414.8965604086 1313769.4446422453 1316176.5635121458 1346140.4194872202 1239492.2608714742 1069265.1465783312 1100983.9085218017 1059150.4767753908 964048.728009726 1087755.9090388026 0.9638328671428155 1.2077796440592632 1.2099925659564446 1.2375390547652731 1.1394948541044962 0.9830010002181365 1.0121608160186306 0.973702342569953 0.8862730323953003 1.0 20.052923423405854 2.7555694682869967 3.9167377814481275 0.9713601055927332 1.1653421740595673 0.5781379036574563 0.0770841895055133 0.15836689039042248 5.581121918407644 0.025035111861718733 0.025396018300895495 569.5993280372393 -2.7555694682869967 0.19398206846683408 VGIDT(ph)PDIDIHGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VGIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VGIDT(1)PDIDIHGPEGK;VGIDT(1)PDIDIHGPEGK;VGIDT(1)PDIDIHGPEGK 187.06 5.1522000000000005e-09 768960000.0 788250.0 659480.0 623065.0 609640.0 547684.0 936130.0 758710.0 641357.0 1200960.0 825000.0 True False 784006.1495828074 681430.3931359212 710787.1362219353 686820.361492203 617428.3110226034 871417.5365129872 722008.2987463393 689218.3160848563 904999.5000395211 772347.7936819653 1.0150946969696955 0.8822843785017896 0.9202941240156125 0.8892630588325594 0.7994174594312959 1.1282708951089675 0.9348227633361316 0.8923678189060253 1.1717512595267134 1.0 19.55889112404179 2.7478892614089907 24.98072553256337 1.000821774987516 0.9006057150004969 0.2927949962967842 0.09261627161949362 1060.5458099893783 2839983.5015368983 0.028780019843976167 0.03015106196965815 559.6148898823643 -2.7478892614089907 -0.10021605998701899 VGIDTPDIDIHGPEGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 215.0 1.6512e-14 1049930000.0 916040.0 970230.0 886400.0 808920.0 823680.0 1186560.0 1067400.0 921390.0 1484470.0 1181320.0 False True 911108.1424216119 1002523.5190335795 1011197.4152730829 911329.1890595627 928570.7656661477 1104535.900061799 1015765.7841360223 990148.8005236184 1118642.2593788884 1105927.146221064 0.8238410147855167 0.9065005072523872 0.9143436063834122 0.8240408892878347 0.8396310451724236 0.9987420092146043 0.9184744109111331 0.8953110554406242 1.0114972430157554 1.0 20.07682491941084 2.7487550317087894 24.9762731385391 0.9493368569512127 0.864997564546716 0.5478282144081237 0.04573304649104253 665.7634197356404 1631117.1647803737 0.014563730097068897 0.015289762812132304 560.7316003586958 -2.7487550317087894 -0.08433929240449678 VGIIAWHPTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGIIAWHPTAR 11 0 Q9BR76;A0A087WW53;F5H390 Q9BR76 CORO1B Coronin-1B;Coronin 0 ; 163.66 2.3686e-05 4480500000.0 3196200.0 4531500.0 4455100.0 3971200.0 3478900.0 3620600.0 4022700.0 3326100.0 4265500.0 3994900.0 False True 3178992.014331204 4682328.238150401 5082339.35557662 4473953.5128236925 3921917.2939441972 3370316.443975653 3828106.6327936873 3574310.4715935797 3214324.679771665 3739942.061794034 0.8500110327394363 1.2519788169938408 1.3589353181419725 1.1962627866693625 1.0486572329580075 0.9011680898497467 1.0235737798989755 0.9557127924808007 0.859458415842348 1.0 21.8345844897553 3.058917848397353 3.618437395530179 0.9532471806220241 1.1836436116457976 0.3802645863591836 0.12884619675392098 0.23487444156313242 6.299638349263671 0.039437966058009394 0.047064561024321286 1145.29627550133 -3.058917848397353 0.2303964310237735 VGINYQPPTVVPGGDLAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGINYQPPTVVPGGDLAK 18 0 P68363;P68363-2;P68366-2;P68366;Q9BQE3;F5H5D3;A0A1W2PQM2 P68363;P68366-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain 0 ; 180.97 1.7652000000000001e-13 344880000.0 716190.0 711400.0 619400.0 589980.0 692690.0 855480.0 811250.0 805040.0 969400.0 861020.0 False True 712334.1126161899 735078.5189496187 706606.1360786866 664671.4075079878 780899.965604706 796342.6811833084 772006.7382240489 865116.1727102901 730504.3592944925 806068.9664436921 0.8837136054982336 0.9119300575392733 0.8766075428957064 0.8245837951564637 0.9687756235672617 0.987933681030675 0.9577427867370668 1.0732532931110215 0.9062554070496174 1.0 19.620543753996166 3.099614908772761 5.990028299318916 0.9926664950148218 0.8775377769200848 0.5902406981744719 0.043988581514855074 0.1412362660770105 7.206470518980269 0.012894560422977281 0.015489226367129637 1257.809610701438 -3.099614908772761 -0.11512871809473701 VGIVAWHPTAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGIVAWHPTAR 11 0 Q9ULV4;Q9ULV4-2;Q9ULV4-3;B4E3S0;F8VV53;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 Q9ULV4 CORO1C Coronin-1C;Coronin 0 ; 84.882 0.01563 639550000.0 402360.0 509320.0 470790.0 422930.0 398920.0 497560.0 467210.0 421650.0 549410.0 518660.0 False True 400193.73846639815 526272.4083095584 537073.1398199629 476472.89463601034 449720.0974159138 463164.8483302555 444609.2673844777 453115.66409531626 414015.26721682155 485558.6747528334 0.8241923361169708 1.0838492558648032 1.1060931824425797 0.9812879872418138 0.9261910471372741 0.9538802876213114 0.915665377847074 0.9331841601346494 0.8526575442763329 1.0 18.88928611541641 3.379707755565441 4.35211340909012 0.9277500037028835 1.0169758623059308 0.15233030064836828 0.07840116016879595 0.3320152098271062 11.280584938225152 0.021627928511383995 0.029833571708315815 2397.2192449362533 -3.379707755565441 0.08922585860304733 VGLQS(ph)PSVEAWEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGLQSPSVEAWEAK 14 0 E9PEZ1;Q8IWT3-3;Q8IWT3 E9PEZ1 CUL9 Cullin-9 1 VGLQS(0.983)PS(0.017)VEAWEAK;VGLQS(0.872)PS(0.128)VEAWEAK 164.58 1.9506e-07 0.0 670020.0 590080.0 533590.0 526380.0 596320.0 639850.0 527540.0 645200.0 937710.0 672380.0 True False 666412.6867662197 609720.4560891067 608714.8339525772 593019.654029043 672257.817334447 595618.6755448879 502020.87480149633 693348.1002592145 706623.9351702482 629468.1327465206 1.0586916987497066 0.9686279961921981 0.9670304218525063 0.9420963876940933 1.0679775231848907 0.9462253044424356 0.7975318347110897 1.1014824487364758 1.1225730079250849 1.0 19.26377381680955 1.6082543737726251 24.999999999821895 1.0840316986166958 0.9655506968065046 0.30785292978172807 0.07562112314140654 0.060686506259893906 2787.327404034066 0.03720311976732373 0.01901921765429401 40.574611836682976 -1.6082543737726251 -0.11848100181019117 VGLVEDSPSTAGDGDDSPVVSLTVPS(ph)TSPPSSSGLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSR 37 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 VGLVEDSPSTAGDGDDSPVVSLTVPS(0.36)T(0.36)S(0.264)PPS(0.009)S(0.002)S(0.002)GLS(0.002)R 132.57 5.8472e-09 130180000.0 65841.0 88078.0 77661.0 86847.0 85577.0 88395.0 75881.0 81005.0 93346.0 90960.0 True False 65486.51937162286 91009.62298572465 88594.99375848706 97841.82129537646 96474.72369538159 82284.46170944799 72210.34613643012 87050.00443505526 70342.12907231644 85154.85492522617 0.7690286059335791 1.0687543659799492 1.0403986224423922 1.14898699999302 1.1329327468186672 0.966292077905615 0.8479885991214179 1.0222553313195497 0.8260495439054335 1.0 16.377801164026135 2.4904196538960224 24.116465483459823 0.9301746055500799 1.0418834519407445 0.1686785229507919 0.11219900878461987 687.9703917350117 1247628.256862265 0.03703765446190406 0.0334777608567812 309.3282993585732 -2.4904196538960224 0.11170884639066458 VGLVEDSPSTAGDGDDSPVVSLTVPSTS(ph)PPSSSGLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSR 37 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 VGLVEDSPSTAGDGDDSPVVSLTVPS(0.218)T(0.218)S(0.429)PPS(0.075)S(0.02)S(0.02)GLS(0.02)R;VGLVEDSPSTAGDGDDSPVVSLTVPS(0.08)T(0.08)S(0.36)PPS(0.104)S(0.104)S(0.136)GLS(0.136)R 112.64 7.3631e-06 364910000.0 151456.0 154824.0 153993.0 170404.0 176249.0 163447.0 170964.0 153706.0 186352.0 182796.0 True False 150640.57772434366 159977.22324691564 175673.87586884934 191977.1289280842 198693.26544033212 152148.29360285267 162693.81817409684 165176.3222232531 140428.0465888666 171129.8027804707 0.8802708545021168 0.9348297061508226 1.0265533706844032 1.1218217154983632 1.161067576845282 0.8890812186468307 0.950704176190773 0.9652107320847273 0.8205937499326811 1.0 17.384731505914644 VGMADANS(ph)PPKPLSKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGMADANSPPKPLSKPR 17 2 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 VGMADANS(1)PPKPLSKPR;VGMADANS(1)PPKPLSKPR 147.9 1.9954e-07 1264430000.0 1569000.0 1103970.0 958950.0 777610.0 922360.0 1615320.0 1538540.0 1316480.0 2227700.0 1561060.0 True False 1560552.6783322862 1140714.974086043 1093961.824657179 876055.3462698496 1039817.0787439621 1503656.7304542756 1464114.9424064422 1414722.422549988 1678713.184650648 1461431.8143092953 1.0678244876377196 0.7805461485900181 0.7485548172319003 0.5994500309163534 0.7115057086911731 1.0288928403853974 1.001835958455862 0.9680386102848163 1.1486770495988172 1.0 20.478951088545017 2.731473093817767 24.494680620817963 1.0202880070940283 0.7695663633448433 0.5180665804369131 0.11910937665401558 357.1206804890652 1234215.7983676728 0.03968477374269579 0.0381664080659799 538.8564601477128 -2.731473093817767 -0.25072164374918504 VGMVETNSQDRPVDDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGMVETNSQDRPVDDVK 17 1 Q9Y3C6 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 0 ; 191.21 2.328e-10 1059410000.0 759950.0 645070.0 606390.0 560720.0 596830.0 712650.0 611600.0 656890.0 1025210.0 731050.0 False True 755858.5136383818 666540.7649969497 691764.4411636337 631707.0945080827 672832.7628114391 663386.1828976546 582014.5714611125 705910.4674198328 772560.7326101769 684393.7631166067 1.1044205169204602 0.9739141425860491 1.010769645260153 0.9230170240468026 0.9831076772930821 0.9693048339258858 0.850408935363061 1.031439071281484 1.1288249166562734 1.0 19.38446708703775 1.5013688398543046 9.246171733728385 1.0695804203275725 0.9712600378465137 0.2386860556326722 0.0668808484285683 0.1280082070888647 26.082689608378693 0.03530503483920142 0.016342742104630457 31.722604730273115 -1.5013688398543046 -0.09832038248105879 VGNES(ph)PVQELK ddPTM_BT-474_Trastuzumab_2h_R1 4 VGNESPVQELK 11 0 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK 224.13 6.7475e-12 2432590000.0 3587410.0 2669819.0 2364621.0 2181852.0 2274459.0 3365660.0 3132650.0 2943253.0 4536360.0 3202740.0 True False 3568095.783158724 2758682.311475331 2697539.083145816 2458074.239489673 2564097.8718753187 3132999.8461114448 2981111.751614868 3162893.4843959017 3418434.8621097207 2998338.3911963343 1.1900243793813603 0.9200703695004283 0.8996779986762936 0.8198121488578558 0.8551729449230866 1.0449120270448795 0.9942546046063224 1.0548820952574036 1.1401097595077547 1.0 21.515731783747718 2.7085910336769485 20.972907047290413 1.046170334038248 0.9274352679418972 0.2286142730960916 0.10015556591746451 142.86131066036697 99973.98420280834 0.033339248005610306 0.03144383530546896 511.20022191122683 -2.7085910336769485 -0.11873506609635076 VGNHTAEGTGTNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGNHTAEGTGTNKK 14 1 O95793-2;O95793-3;O95793;Q5JW30;A0A087X1A5 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 112.42 0.00038588 188680000.0 370030.0 411700.0 304190.0 351670.0 383370.0 365900.0 375780.0 373460.0 499950.0 392710.0 False True 368037.7995941978 425403.18562209443 347017.3079331216 396191.38594246225 432189.8970879848 340606.19423595245 357602.08578099613 401329.4815914541 376744.0214867761 367646.9115840536 1.001063215813401 1.157097128299516 0.943887455596875 1.0776410013494229 1.1755569908797534 0.9264492193567117 0.9726780628734836 1.0916166271117984 1.0247441488452234 1.0 18.487961340061524 2.7257075571207348 24.984310688759777 1.013029057112871 1.069131282423097 0.16690981237901037 0.07420471628278438 1724.0750966431788 3351326.116003965 0.02427190006175611 0.0230013126927766 531.7500716836662 -2.7257075571207348 0.056102225310225906 VGNLGLATSFFNER ddPTM_BT-474_Trastuzumab_2h_R1 2 VGNLGLATSFFNER 14 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;A0A0J9YVQ7 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ; 178.15 4.6885e-06 352630000.0 220900.0 231810.0 222900.0 202017.0 191347.0 207699.0 232980.0 198822.0 252870.0 237050.0 False True 219710.69894429712 239525.65571789606 254282.3825184682 227592.3314867302 215713.90624747518 193341.25700085575 221709.8673299708 213659.10723765934 190553.5767844009 221921.26605128433 0.990038957751456 1.0793271865281424 1.1458225119340544 1.0255544028580628 0.9720289996796672 0.8712155461305635 0.9990474156664882 0.9627698644630314 0.8586539729832174 1.0 17.75968839774764 3.2995370047829757 3.0887537308509505 0.9423734069379084 1.0735870274799806 0.5153908808825012 0.05661022529098325 0.1959520888381035 3.7901858534434147 0.016479581814921356 0.022492634322521247 1993.1363274223359 -3.2995370047829757 0.1312136205420722 VGNPWDPNVLYGPLHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGNPWDPNVLYGPLHTK 17 0 P49419;P49419-2;A0A1B0GW77;A0A1B0GW82;A0A1B0GTG2;A0A1B0GUA1;A0A1B0GV49;A0A1B0GTJ4 P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase 0 ; 199.76 1.3003000000000002e-11 958080000.0 1151360.0 1201810.0 1104370.0 1005720.0 953270.0 1510290.0 1254000.0 1127900.0 1700730.0 1324890.0 False True 1145161.205688123 1241811.519340513 1259855.6966438799 1133044.048881206 1074663.2840260386 1405887.2071402478 1193339.2292547987 1212069.6253601513 1281607.8801144217 1240334.3859046043 0.923268127290473 1.0011909154923826 1.0157387483255478 0.9134988610791847 0.866430291894441 1.133474346206166 0.9621108975258064 0.9772119834250673 1.0332761025404578 1.0 20.24229768336558 2.764396051992844 24.999651105066192 1.0113565085281468 0.9494894264950121 0.2891539359874097 0.05920887769309608 1278.3449138363524 1236987.958608254 0.01866319528572529 0.01979064209634617 581.2942833745213 -2.764396051992844 -0.061867082033134735 VGPDTER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGPDTER 7 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 ;; 91.906 0.037363 735161000.0 766400.0 810870.0 741080.0 733400.0 706740.0 750770.0 775390.0 740170.0 947110.0 787780.0 False True 762273.787555044 837859.3177687344 845417.6224171665 826248.3648028047 796739.1498238302 698871.0370224818 737881.4234225517 795405.2439071037 713707.4311237937 737503.20594761 1.0335870832935656 1.1360754922986103 1.146323996423715 1.1203318956982256 1.0803195747469445 0.9476176257762973 1.00051283502484 1.0785108966205725 0.9677346828706441 1.0 19.492289795249047 2.9498397214218333 6.47174758836737 1.0099978961289904 1.1122634112248058 0.5950360200075357 0.043076972878318416 0.17173871739709792 17.269301506065975 0.01374512778218639 0.0147998086848954 890.9220781484621 -2.9498397214218333 0.10226551509581538 VGPGNHGTEGS(ph)GGERHSDTDSDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGPGNHGTEGSGGERHSDTDSDRR 24 2 Q99442 Q99442 SEC62 Translocation protein SEC62 1 VGPGNHGTEGS(0.5)GGERHS(0.5)DTDSDRR 188.8 7.4472e-18 160190000.0 58382.0 73253.0 89582.0 70637.0 93741.0 90307.0 77244.0 53436.0 80355.0 75458.0 True False 58067.67779884995 75691.18182262633 102194.36693929764 79579.6369574252 105678.36070356244 84064.28964981201 73507.4126192646 57423.66566250998 60552.58695183502 70642.20583715604 0.8219969508413595 1.0714725131475813 1.4466474500368156 1.1265168749242014 1.4959663200094788 1.190000915933974 1.0405594183838685 0.8128804159213635 0.8571729355595217 1.0 16.10824277209189 2.032623929836479 3.2257200444009144 0.8755511419155543 1.208409746616319 0.35153859710714175 0.1830856527027934 0.2600661179174082 5.4387577566537635 0.08630657514620102 0.05370797527001444 107.80128304642142 -2.032623929836479 0.3328586047007648 VGPGNHGTEGSGGERHS(ph)DTDSDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGPGNHGTEGSGGERHSDTDSDRR 24 2 Q99442 Q99442 SEC62 Translocation protein SEC62 1 VGPGNHGTEGS(0.008)GGERHS(0.991)DTDSDRR 207.48 3.5434e-25 179370000.0 41807.0 58528.0 67113.0 53092.0 76765.0 93043.0 59886.0 39972.0 58435.0 59436.0 True False 41581.915757194365 60476.069099076834 76561.92704334657 59813.44175635462 86540.56772819768 86611.15640966312 56989.08539326394 42954.91361370325 44034.47723888346 55642.7435942803 0.7473016798091299 1.0868635367809822 1.3759552836143152 1.0749549337912778 1.5552893717680283 1.5565579771046043 1.024196179268235 0.7719769162877641 0.7913786128153808 1.0 15.763905936602093 2.003753645688896 24.698072202384825 0.8463585507594562 1.2443577661217347 0.3487782655443239 0.23327943814422078 101.27534885402667 666361.578215777 0.09238313940816105 0.06790754046028319 100.86805479416442 -2.003753645688896 0.39799921536227845 VGQEIEVRPGIVSK ddPTM_BT-474_Trastuzumab_2h_R1 3 VGQEIEVRPGIVSK 14 1 P41091 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 0 ;; 100.41 0.0016372 808280000.0 1107670.0 1176110.0 1109160.0 1051550.0 1040440.0 1443790.0 1309790.0 1184330.0 1745220.0 1495040.0 False True 1101706.427793707 1215256.110376491 1265320.087008454 1184676.1221821497 1172933.8668289718 1343984.1956160853 1246430.453816303 1272710.718505885 1315133.9157498784 1399625.2672318614 0.7871438545637507 0.8682724860919306 0.9040420437042892 0.8464237892226454 0.8380342183652962 0.9602457365421665 0.8905458360875818 0.9093224795969965 0.9396328764133506 1.0 20.416609184013904 7.999999987877839 0.05491997759046714 1.1924071479057603 0.3025584066832832 0.6661625288243984 0.034439612261707823 252.98005525674606 1.0430354626654188 3.6922709687984203 18.478949379601037 99999997.2087693 -7.999999987877839 -0.8898487412224771 VGQGYPHDPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGQGYPHDPPK 11 0 P61081;M0QYI6 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 ; 95.477 0.0077288 1123640000.0 2833700.0 2426300.0 2207910.0 2259150.0 2365500.0 3085200.0 2882300.0 2518400.0 3859300.0 2926800.0 False True 2818443.6740536676 2507057.9287706804 2518764.536502246 2545158.158364134 2666732.403583029 2871927.385779616 2742872.1375447437 2706335.7961760797 2908227.2269705296 2740009.118240456 1.0286256550356225 0.9149816006381142 0.9192540709936446 0.9288867476465009 0.9732567624795048 1.048145192897706 1.0010448940790848 0.9877105072971435 1.0613932660333985 1.0 21.38574926353859 2.9752831771926185 5.548621169382788 1.0146804446086939 0.9441093583062454 0.4624179777361703 0.03644692748492123 0.16381677032707267 15.519442131519957 0.010965233999314723 0.01215832961585639 944.6766420754741 -2.9752831771926185 -0.07057108630244846 VGQQAIVLCIS(ph)PSKPNPVFK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGQQAIVLCISPSKPNPVFK 20 1 Q16656-2;Q16656;Q16656-4;C9JP85 Q16656-2 NRF1 Nuclear respiratory factor 1 1 VGQQAIVLCIS(0.996)PS(0.004)KPNPVFK 194.97 1.0876e-18 604570000.0 1013700.0 775390.0 816560.0 710710.0 732390.0 1017400.0 1010000.0 987560.0 1442200.0 1046400.0 True False 1008242.3518326583 801198.3874168474 931524.5503332466 800685.8131292628 825655.5252843705 947069.5327019895 961142.441425316 1061256.7419280692 1086789.1344899074 979617.8561318878 1.0292200632334296 0.8178682967054661 0.9509060543378189 0.8173450576848866 0.8428342951449947 0.9667744690175225 0.9811401817648326 1.083337482351067 1.1094011074698 1.0 19.90185954551933 2.170697715740141 1.8353367921790098 1.0703644608471559 0.8889297203716756 0.5353151552446798 0.06775044339646723 0.2413686883291376 1.5984770650254976 0.034482622923306616 0.02049477943154061 148.14865593594826 -2.170697715740141 -0.18143474047548025 VGQTIER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGQTIER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 129.55 0.008489499999999999 1221770000.0 1380620.0 1558050.0 1509200.0 1498140.0 1490010.0 1677690.0 1679390.0 1427590.0 1890510.0 1644080.0 False True 1373186.895321303 1609908.7523888869 1721682.2417984386 1687804.3703922445 1679753.9415188136 1561715.2391574623 1598151.4898071906 1534124.0149551346 1424619.1420361367 1539153.4068322962 0.8921702601090519 1.0459703011035208 1.118590410907644 1.0965796930313036 1.0913492664619344 1.0146585988277803 1.038331515697527 0.9967323647825902 0.9255861928461826 1.0 20.55370560102046 1.6360616187358954 2.4116725607685225 0.9617707131924619 1.049853217985718 0.21163944848675575 0.06143204857198862 0.37465210888340683 4.890195184659245 0.044338603687208794 0.01745192117274329 43.257520148150576 -1.6360616187358954 0.08808250479325619 VGRPSNIGQAQPIIDQLAEEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 VGRPSNIGQAQPIIDQLAEEAR 22 1 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-2;Q9UHX1;A0A0J9YYL3;A0A0J9YXJ8;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7 A0A0J9YVP6;E9PN18 PUF60 Poly(U)-binding-splicing factor PUF60 0 ;; 160.33 1.6980999999999998e-11 958740000.0 545005.0 616052.0 578645.0 577618.0 584390.0 627799.0 608450.0 512888.0 643572.0 640107.0 False True 542070.7536357478 636556.918408702 660113.1863274968 650744.3795754923 658808.6025490974 584400.7328098852 579016.9489952809 551162.3069524933 484972.3040229777 599254.823236826 0.9045747028080591 1.062247467563785 1.1015567346825 1.085922639822154 1.099379724622985 0.9752123973792857 0.9662282664122219 0.9197461339992811 0.8092922830448647 1.0 19.192810090212507 2.2418275151512344 1.7226981616240185 0.9048329643442913 1.054597485711774 0.4233464450024287 0.06982282987514918 0.3285484388852705 1.9450198845945352 0.03655909009369104 0.02285371364405859 174.51289180479694 -2.2418275151512344 0.14976452136748264 VGRPTASK ddPTM_BT-474_Trastuzumab_2h_R1 4 VGRPTASK 8 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 ;;; 91.867 0.011111 4395170000.0 3305110.0 3594880.0 3652120.0 2754300.0 1963290.0 2653390.0 3441470.0 2531380.0 5540440.0 2958280.0 False True 3287315.654992242 3714533.40764915 4166306.7512038993 3102994.09759526 2213303.3441684768 2469967.394708209 3274992.948407906 2720284.4296871866 4175072.800092405 2769480.0376890716 1.186979364449677 1.3412385563712734 1.5043642469004317 1.1204247928735682 0.7991764930774935 0.8918523914580068 1.1825298986955861 0.9822365182877667 1.5075294796405891 1.0 21.40118370896974 3.54933877575439 7.314687955255426 1.0473620864909947 1.3408550462695779 0.3013621534038572 0.1930801730673736 0.326865800137123 29.031264139411874 0.051604787359293504 0.0798952110048609 3542.7358798057194 -3.54933877575439 0.29349295977858314 VGS(ph)LDNVGHLPAGGAVK ddPTM_BT-474_Trastuzumab_2h_R1 8 VGSLDNVGHLPAGGAVK 17 0 E7EVA0;P27816-4;H0Y2V1;F8W9U4;H7C4C5;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK 218.05 5.0086e-15 20500810000.0 16542880.0 11766150.0 10052350.0 8926560.0 9392190.0 15164750.0 14777570.0 14223060.0 26100240.0 13736790.0 True False 16453814.97216675 12157779.189962141 11467633.503407469 10056661.580739193 10588229.724628413 14116446.526481709 14062722.483300528 15284456.960435264 19668185.577297762 12860096.301542383 1.2794472596751358 0.9453878808437843 0.8917222106674343 0.782005153377665 0.8233398472574819 1.0976936871606977 1.093516110109837 1.1885180796509365 1.5293964458834455 1.0 23.61639811039508 2.0816396737638336 1.62495769752404 1.261447362516189 0.9397733933133108 0.32423055783849786 0.17741805375467515 0.4194880371391711 2.1008239742069734 0.1083435263105506 0.05689781646642913 120.68121495234539 -2.0816396737638336 -0.3216739692028783 VGS(ph)PLTLTDAQTR ddPTM_BT-474_Trastuzumab_2h_R1 5 VGSPLTLTDAQTR 13 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 VGS(0.969)PLT(0.031)LTDAQTR;VGS(1)PLTLTDAQTR;VGS(0.869)PLT(0.131)LTDAQTR;VGS(0.993)PLT(0.007)LTDAQTR;VGS(0.904)PLT(0.064)LT(0.032)DAQTR 260.97 5.1071e-24 668250000.0 742370.0 667666.0 520916.0 545915.0 510667.0 714662.0 656661.0 581671.0 876826.0 591518.0 True False 738373.1624050601 689888.8591973798 594256.4449169601 615027.7830260744 575697.4154895522 665259.0980733925 624895.7987413768 625078.2436854893 660743.9811664455 553766.8148159618 1.3333647713260866 1.245811126162655 1.073116750620845 1.1106259287683609 1.039602590994693 1.2013343527897822 1.1284457320705539 1.128775193748703 1.1931808903825998 1.0 19.078919075388075 4.419643403437638 3.943523924412439 1.1166916824300226 1.3187258491207068 0.6068361811772125 0.05953693692775839 0.12970265713617188 4.010759433015626 0.01406189030933218 0.04748898710370237 26281.091812308143 -4.419643403437638 0.2020341666906842 VGS(ph)TENIK ddPTM_BT-474_Trastuzumab_2h_R1 6 VGSTENIK 8 0 E7EVA0;H0Y2V1;F8W9U4;H7C4C5;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 VGS(0.963)T(0.037)ENIK;VGS(0.99)T(0.01)ENIK;VGS(0.5)T(0.5)ENIK;VGS(0.5)T(0.5)ENIK;VGS(0.5)T(0.5)ENIK;VGS(0.944)T(0.056)ENIK 154.84 0.000439 8699520000.0 13500430.0 9200640.0 7241200.0 7191950.0 7379310.0 10595750.0 10162110.0 9754820.0 16763080.0 9276540.0 True False 13427745.184918772 9506877.740495678 8260698.018361302 8102450.132592763 8319021.387902903 9863290.742212623 9670529.91626993 10482774.202372283 12632043.54776389 8684503.27515454 1.546173080886981 1.094694473510519 0.9511998276279426 0.9329779580800008 0.9579156256066778 1.1357345871963076 1.1135386342632065 1.2070666416077485 1.4545499204200718 1.0 23.05001190323796 1.692704933679337 3.409641966017867 1.2547726588001786 1.0857219751787885 0.06050953846503837 0.19444540451010175 0.450138898002373 12.021468281518281 0.1140588486463488 0.052424306017647276 49.28388479213596 -1.692704933679337 -0.16905068362139009 VGSEIER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGSEIER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 125.01 0.0095177 4606050000.0 3733170.0 4401640.0 4038770.0 4355620.0 3956300.0 4157460.0 4244760.0 3689110.0 4653720.0 3912430.0 False True 3713071.027514182 4548145.926552433 4607393.710381844 4907041.045408221 4460111.35417271 3870064.5758081567 4039424.7422421128 3964410.1211210024 3506873.062653148 3662735.36780016 1.0137426416760908 1.241734788304963 1.2579106180824213 1.3397203326636704 1.2176995895970106 1.0566050197976817 1.1028437319696927 1.082363240318404 0.9574464738792684 1.0 21.80449003958879 2.7420314616581174 5.946083678615284 1.0526983213469139 1.2256730970085876 0.5002229216328158 0.0862982114154353 0.14063005903082726 21.96804810687684 0.02793308377273987 0.028080428053112436 552.1174349554212 -2.7420314616581174 0.17297477566167374 VGSGQGGS(ph)PCWK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGSGQGGSPCWK 12 0 A0A669KBI7;Q9UMN6;Q9UMN6-2 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 VGSGQGGS(1)PCWK;VGSGQGGS(1)PCWK 201.3 1.5728e-07 673500000.0 641840.0 609420.0 556780.0 526080.0 523160.0 737540.0 693050.0 625050.0 899620.0 679730.0 True False 638384.4047551273 629704.1762978301 635169.7843814832 592681.6740598023 589781.3249877404 686555.5957824123 659524.5237918966 671694.4049395882 677920.7052903972 636349.0494538696 1.0031984887900822 0.98955781711037 0.9981468266929943 0.931378265699393 0.9268204698253344 1.0788978098916486 1.0364194373479725 1.055543974672474 1.0653283852190953 1.0 19.279458802496 2.7320602384399004 24.999949594625193 1.0501143293338797 0.9703549170172493 0.6132465175136914 0.030696426445322222 357.31038590334447 1374186.4450853143 0.010127804438221614 0.009758605079834618 539.5854600586854 -2.7320602384399004 -0.07975941231663042 VGSGS(ph)LDNLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGSGSLDNLGR 11 0 Q13136-2;A0A2R8Y7R9;Q13136;H0YDW2 Q13136-2 PPFIA1 Liprin-alpha-1 1 VGS(0.003)GS(0.997)LDNLGR;VGS(0.003)GS(0.997)LDNLGR 124.45 0.00036592 1553230000.0 900080.0 1002480.0 912490.0 975220.0 873250.0 1084740.0 1080190.0 1000730.0 1313580.0 1107590.0 True False 895234.0692882899 1035846.9407880441 1040960.660494738 1098682.7520084418 984453.211341738 1009754.4770032995 1027937.0829734795 1075409.5542039743 989865.8100702061 1036902.6579444937 0.8633732997299468 0.9989818550966565 1.0039135810089337 1.059581382679082 0.9494171934068247 0.9738180042907678 0.991353503723496 1.0371364621012882 0.9546371614404662 1.0 19.983849032913696 4.738552780908 10.614215335049083 0.9992228428156921 0.8631452759257005 0.6072762138322567 0.03206091243060823 0.045232417675525584 230.08186771248614 0.007639768878734212 0.04415914474503613 54771.266182373256 -4.738552780908 -0.13607756688999162 VGSHPEGGASWLSTAANFLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGSHPEGGASWLSTAANFLSR 21 0 Q9NVT9;Q9NVT9-2 Q9NVT9 ARMC1 Armadillo repeat-containing protein 1 0 ; 181.26 5.0951e-17 640690000.0 432890.0 349800.0 286960.0 334160.0 344160.0 366610.0 344910.0 332130.0 577430.0 378190.0 False True 430559.36833860085 361442.8815414349 327361.4736989665 376464.6217378033 387986.7360038618 341267.113607113 328225.38561584806 356915.22712196707 435130.1136655851 354053.59041525144 1.2160853045823365 1.020870544251555 0.9246099532983718 1.0632984156332579 1.0958418344206364 0.9638854762265175 0.9270500130527958 1.0080824959389887 1.2289950601976474 1.0 18.43360822111447 4.738203182749568 8.917444037273329 1.0192484160859798 1.2169946032539818 0.3064894122334797 0.08533365338054548 0.09707976116460174 151.4000228458042 0.020260004605554556 0.11760419428872951 54727.19417637207 -4.738203182749568 0.19774618716800196 VGSLT(ph)PPS(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGSLTPPSSPK 11 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 2 VGS(0.001)LT(0.999)PPS(0.835)S(0.165)PK 131.17 0.0011081 581120000.0 950050.0 709100.0 699850.0 634040.0 668180.0 873360.0 862530.0 842380.0 1386500.0 833570.0 True False 944935.0363604788 732701.9648399977 798382.7967947504 714309.3989904148 753268.7623868567 812986.6788683009 820806.1287154241 905242.6731189677 1044815.653148147 780370.8489448179 1.210879465369801 0.938915088679599 1.023081266905712 0.9153460818741136 0.9652702473514901 1.0417952951056342 1.051815466742871 1.160016003087501 1.3388706850863272 1.0 19.573800360958522 1.7968088674537617 2.666288823716255 1.190636793755701 1.0076301309445936 0.2737669838478999 0.1078778798204929 0.28366743882324724 3.8646334731815193 0.060058921529030564 0.02863286219486986 62.63381532419442 -1.7968088674537617 -0.18300666281110733 VGSLT(ph)PPSS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 4 VGSLTPPSSPK 11 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 2 VGSLT(1)PPS(0.368)S(0.632)PK;VGSLT(1)PPS(0.141)S(0.859)PK;VGSLT(0.996)PPS(0.107)S(0.897)PK;VGSLT(1)PPS(0.115)S(0.885)PK 141.37 0.00020244 1118930000.0 3322720.0 2650360.0 2368800.0 2357310.0 2304790.0 3142790.0 3176630.0 2904180.0 4850890.0 2966200.0 True False 3304830.8447088967 2738575.6304235477 2702306.4500212967 2655745.2042995635 2598291.3449393944 2925536.3246318954 3022964.2709949557 3120904.6587272277 3655453.158095792 2776894.576508415 1.190117504879963 0.9862007919173337 0.9731397341771242 0.9563723544877311 0.9356823866919748 1.0535280486990537 1.0886132648204245 1.1238830185088844 1.3163816837051303 1.0 21.40504097628448 2.043422110975418 1.8523307015183264 1.1615586744971549 1.0036710220416087 0.26865515535275286 0.09763043453152585 0.41375158087037583 2.6765219481205627 0.055703849188891916 0.029372127701751252 110.5152246855138 -2.043422110975418 -0.15788765245554615 VGSLYPEMSAHER ddPTM_BT-474_Trastuzumab_2h_R1 1 VGSLYPEMSAHER 13 0 E7EX90;Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2;Q6AWB1 E7EX90 DCTN1;DKFZp686E0752 Dynactin subunit 1 0 64.244 0.062943 131380000.0 319020.0 296220.0 307360.0 308880.0 245760.0 344220.0 389990.0 317020.0 452630.0 359150.0 False True 317302.43176645413 306079.5036312288 350633.61637898773 347984.1763298198 277056.07926635654 320424.8816067224 371124.6937935246 340677.64219494193 341085.4014312624 336228.7395162154 0.9437100237862073 0.910331175352925 1.0428424913453231 1.0349626175041395 0.8240107007657949 0.952996707145759 1.1037863518969837 1.0132317739558132 1.014444517509226 1.0 18.359083520204976 2.325475177614572 12.998706795766523 1.0342232011248982 0.9516792314112383 0.2835066374273535 0.0633736970398445 0.9280109817918581 134.8050785885731 0.022786206653425234 0.019061211224063818 211.5802751693558 -2.325475177614572 -0.08254396971365985 VGSPERPLSDLGLISYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGSPERPLSDLGLISYR 17 1 O95251-4;O95251;O95251-2;E7EUP3;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 136.35 9.6581e-06 656890000.0 225180.0 233860.0 160670.0 195090.0 185820.0 203670.0 211350.0 200310.0 231690.0 197660.0 False True 223967.65589984995 241643.88872864487 183290.93943132472 219788.37399697152 209483.07555857048 189590.77228760984 201126.19306459482 215258.14935357025 174593.10398694128 185045.16957476034 1.2103404612751294 1.305864342657256 0.9905199895384089 1.1877552626856036 1.1320645442405723 1.0245648277298751 1.086903233014886 1.1632735393646876 0.9435161392656818 1.0 17.497517950407314 7.999999999999999 0.2136734363557027 1.0168981743352936 2.186881323118532 0.38702002965731286 0.08555897505556362 56.78519201243347 0.7143133987683035 0.13712957417380076 22.721905634184022 99999999.99999979 -7.999999999999999 1.1699831487832384 VGST(ph)ENIK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGSTENIK 8 0 E7EVA0;H0Y2V1;F8W9U4;H7C4C5;P27816-6;P27816;P27816-2;P27816-5 E7EVA0;P27816-6 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 VGS(0.388)T(0.612)ENIK 124.67 0.014475 1774300000.0 2669900.0 1818800.0 1337900.0 1377400.0 1290400.0 2280400.0 2043700.0 2149200.0 3637800.0 1927700.0 True False 2655525.555053778 1879337.6585121818 1526264.6907647306 1551778.6987719971 1454724.7911999752 2122761.3154841918 1944838.4233078412 2309584.2174164695 2741312.934022591 1804672.5356129992 1.4714722492032422 1.0413732250177015 0.8457294388016489 0.8598671881737809 0.8060879536274673 1.1762584477760372 1.0776683220522505 1.2797802215303096 1.5190085070427695 1.0 20.783305647928707 1.9999700128898732 1.845036066667386 1.2938267612067955 1.0008754376868068 0.1795168044486556 0.21696574541037159 0.5180864767258957 3.290610570112283 0.13295648406976687 0.0673397250793421 99.99309545109895 -1.9999700128898732 -0.29295132351998876 VGTGEPCCDWVGDEGAGHFVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VGTGEPCCDWVGDEGAGHFVK 21 0 P52209-2;P52209;K7EM49;K7EPF6 P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating 0 ; 212.85 7.2724e-23 3813900000.0 1670040.0 1962700.0 1615720.0 1683100.0 1710310.0 1962410.0 1857280.0 1697060.0 2133190.0 1916810.0 False True 1661048.6901988864 2028027.2830227963 1843199.3319100034 1896180.2874278696 1928107.840698414 1826753.2157162505 1767436.2709013983 1823703.2346960695 1607493.9077815302 1794477.5447363951 0.9256447343524106 1.1301491562106503 1.0271509595182844 1.056675405601921 1.0744675219558955 1.0179861102606311 0.9849308374382756 1.0162864617868304 0.8958005144710058 1.0 20.775132439371372 1.9931891840134401 1.2779036308944467 0.9625360328848375 1.046747634644851 0.2461248255996904 0.05624896075982974 0.5902952732965586 1.7877525256687843 0.03834777949462846 0.017805897569717188 98.44398464670734 -1.9931891840134401 0.08421160176001352 VGTLWR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGTLWR 6 0 Q04637-9;Q04637-4;Q04637-5;Q04637;Q04637-8;Q04637-3;E7EUU4;E9PGM1;E7EX73;Q04637-6;Q04637-7;H7C0V6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 ; 166.22 0.0071561 0.0 491600.0 582200.0 451540.0 460910.0 436070.0 446510.0 421370.0 438320.0 535610.0 521670.0 False True 488953.28022189427 601578.175052668 515112.90714396193 519261.15874183306 491600.92971061217 415643.8146714818 400986.72331028315 471029.6641438616 403616.0923062954 488376.5739758431 1.001180863859534 1.2317916278318957 1.0547453227546524 1.0632392838062654 1.0066021916418304 0.8510723831156591 0.8210605190291487 0.9644804629125403 0.8264444156698224 1.0 18.897634474476646 3.061846712182354 2.238668801081998 0.8911160160786216 1.1010975829120737 0.5877192508438267 0.0768185315899197 0.19739863773330354 2.008384270323336 0.023833098849151635 0.028981968374324724 1153.046208824725 -3.061846712182354 0.20998156683345215 VGTVIGSNKLEQMPSKEDAIEHFMK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGTVIGSNKLEQMPSKEDAIEHFMK 25 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 134.98 2.6852e-05 334050000.0 243370.0 251420.0 300960.0 287200.0 277460.0 360570.0 415080.0 333590.0 634970.0 460040.0 False True 242059.72296094891 259788.36271340022 343332.55200878554 323559.4905527203 312792.88636573596 335644.64459048206 395000.9946404161 358484.17973569635 478490.1516620827 430679.85333994066 0.5620409709991434 0.6032052827610356 0.7971873988212519 0.7512761231887274 0.7262770337177692 0.7793367671776228 0.9171568894555121 0.8323681197428583 1.1110112255109477 1.0 18.716256312141564 3.8115474458888943 0.24702564698286153 1.0617473864858307 0.3482451778707026 0.7671405385640038 0.0769762855762507 3.0665430150419266 0.23771567073294647 0.12473069324169943 0.661207629217305 6479.5887974118405 -3.8115474458888943 -0.7135022086151281 VGVEASEETPQTSSSSARPGT(ph)PSDHQSQEASQFER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 Q6Y7W6;I1E4Y6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VGVEASEETPQTSSSSARPGT(0.788)PS(0.199)DHQS(0.013)QEASQFER;VGVEASEETPQTSSSSARPGT(0.972)PS(0.028)DHQSQEASQFER;VGVEASEETPQTSSSSARPGT(0.978)PS(0.022)DHQSQEASQFER 321.63 5.1300999999999985e-105 7187300000.0 743120.0 1373950.0 1311670.0 1487610.0 1648750.0 1594100.0 1558800.0 1398940.0 1326800.0 1631950.0 True False 739119.1244883938 1419681.0951796854 1496341.734759978 1675941.273471911 1858708.5395931196 1483903.6191077665 1483394.888805727 1503336.006473381 999827.9182091309 1527797.5538173127 0.4837808010895496 0.9292337794575659 0.9794110031275152 1.0969655431666654 1.2165934779441177 0.9712697964466077 0.970936813650053 0.9839890126261738 0.6544243481153563 1.0 20.543021955987292 4.752602839935777 3.077388303519867 0.9932798206399125 0.39485752067232976 0.5565366054036514 0.13296694805953035 0.2922109793776142 4.071064030508287 0.033207428377208636 0.43284344395131746 56572.17028293218 -4.752602839935777 -0.5984222999675828 VGVEASEETPQTSSSSARPGTPS(ph)DHQSQEASQFER ddPTM_BT-474_Trastuzumab_2h_R1 1 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 Q6Y7W6;I1E4Y6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VGVEASEETPQTSSSSARPGT(0.404)PS(0.596)DHQSQEASQFER 186.49 1.3778e-20 3312000000.0 503310.0 734370.0 841160.0 1001300.0 925460.0 976280.0 938190.0 816190.0 749060.0 927510.0 True False 500600.23488299805 758813.0615139607 959588.0165062123 1128064.4773343978 1043311.8453688244 908792.0615159229 892806.1654661567 877098.2423288424 564464.1998897591 868315.5177187384 0.5765188167985161 0.8738909371417599 1.1051144393080379 1.2991412157392728 1.2015354143501213 1.0466150183559146 1.0282047795388487 1.0101146696458658 0.6500680782173909 1.0 19.727859840996437 -4.182852925711722 17.066564955567628 7.977150540492004 0.9991455746059309 0.0 0.2148405147761781 0.0 0.0 0.0 0.049107543996799924 6.563675082244222e-05 4.182852925711722 -6.978004965886073 VGVNGFGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGVNGFGR 8 0 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;; 148.21 0.0012212999999999998 16974200000.0 6391700.0 7909000.0 7224000.0 6665300.0 6386400.0 7822900.0 7526800.0 7173500.0 8221300.0 7635500.0 False True 6357287.797384625 8172246.28390853 8241076.407866371 7509126.296591402 7199670.184841536 7282121.336125818 7162699.928831767 7708822.996294909 6195270.774775949 7148195.852919562 0.8893555700195451 1.1432599850451373 1.152889005482473 1.0504925230223545 1.007201024283764 1.0187355643244662 1.002029054073313 1.078429180580771 0.8666901274460176 1.0 22.769147732545896 3.343071137318349 4.292889656532171 1.006214813570172 1.0743374753943251 0.1081502208264532 0.08375108918311702 0.4710959456535316 15.458734614398475 0.023298921167142963 0.031849391074034186 2203.287331364898 -3.343071137318349 0.06812266182415305 VGVSEAGLQHEILR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGVSEAGLQHEILR 14 0 Q6UWE0;Q6UWE0-2;Q6UWE0-3 Q6UWE0 LRSAM1 E3 ubiquitin-protein ligase LRSAM1 0 85.493 0.0090425 0.0 100900.0 111330.0 122980.0 129090.0 137570.0 150830.0 164200.0 95233.0 143000.0 123610.0 False True 100356.76561104394 115035.55174959383 140294.51503867746 145432.78076410407 155088.7240587264 140403.47711562936 156257.01869508612 102339.77004337547 107759.56610182823 115721.10397215481 0.8672295905091962 0.9940758236913645 1.212350299323411 1.2567524485343535 1.3401939554261801 1.213291891420373 1.3502897339510793 0.8843656561382338 0.9312006401853691 1.0 16.820292466103826 1.6730805031560796 8.657426684951913 0.9323533285605505 1.1810419989151966 0.3677000529716651 0.14235881290124808 0.13307974165094189 16.565159863332998 0.07525075541295714 0.03981726230709827 47.1064637373935 -1.6730805031560796 0.24868867035464604 VGVSSKPDS(ph)SPVLSPGNK ddPTM_BT-474_Trastuzumab_2h_R1 1 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8;Q8N4C8-4;Q8N4C8-2;Q8N4C8-3;Q8N4C8-5 Q8N4C8 MINK1 Misshapen-like kinase 1 1 VGVSSKPDS(0.57)S(0.43)PVLSPGNK 175.77 1.5317e-12 1224700000.0 2075200.0 1527900.0 1616800.0 1302600.0 1456900.0 2410300.0 2257600.0 1942300.0 2997100.0 2103700.0 True False 2064027.3537763932 1578755.2278649446 1844431.3865224728 1467509.0264414137 1642427.5792771592 2243681.6342359004 2148391.2631304925 2087244.288799556 2258504.8640824417 1969440.0649318176 1.0480275031105606 0.801626439908747 0.9365257767244252 0.7451402317705054 0.833956619712629 1.1392484971679384 1.0908639980393973 1.0598160999998834 1.146775118622679 1.0 20.909354082066255 2.7415319167136114 24.995238415618104 1.0886637468887215 0.8655067806367907 0.612120932372677 0.08517967796100577 164.91216558828947 1387281.165289669 0.02545784381318576 0.025963422535894298 551.4827298816878 -2.7415319167136114 -0.22315696625193082 VGVSSKPDSS(ph)PVLSPGNK ddPTM_BT-474_Trastuzumab_2h_R1 3 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8;Q8N4C8-4;Q8N4C8-2;Q8N4C8-3;Q8N4C8-5 Q8N4C8 MINK1 Misshapen-like kinase 1 1 VGVSSKPDS(0.285)S(0.714)PVLSPGNK;VGVSSKPDS(0.252)S(0.748)PVLSPGNK;VGVSSKPDS(0.192)S(0.808)PVLSPGNK 201.61 8.3797e-16 2606740000.0 4034900.0 3318500.0 2948770.0 2819300.0 2903790.0 4998600.0 4405000.0 3974800.0 6150400.0 4571100.0 True False 4013176.546719535 3428954.266424391 3363931.1848316905 3176223.090930659 3273570.4443882382 4653058.5474387305 4191913.3212658586 4271419.759625434 4634716.33113766 4279368.484484394 0.9377964438608208 0.801275767407427 0.7860812166627429 0.7422177133020016 0.7649657785388535 1.087323647007547 0.979563535242263 0.998142547226821 1.0830374500213389 1.0 22.028966480080356 2.7429986771253096 24.988955586561186 1.022716847090316 0.8014769634953915 0.7827026781413127 0.05870228411270339 176.73330288552862 995116.1803511031 0.01860887178770217 0.01914035481605694 553.3484236964174 -2.7429986771253096 -0.22123988359492452 VGWEQLLTTIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGWEQLLTTIAR 12 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;P12814-3;P12814;P12814-2;P12814-4;H9KV75;H7C5W8;H0YJ11;H0YJW3 O43707;P12814-3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 ; 193.28 6.9895000000000014e-06 636120000.0 364570.0 394100.0 397920.0 352390.0 331890.0 379360.0 363730.0 272110.0 389650.0 366780.0 False True 362607.19562753505 407217.38026151876 453943.67721735686 397002.5378686389 374154.22423384973 353135.7361173846 346134.9903164657 292416.22994658217 293625.97854249884 343371.7863838434 1.0560191897134759 1.1859372156054329 1.3220179852223182 1.1561885792935926 1.089647545519642 1.028435503791294 1.0080472655069377 0.8516023783611045 0.8551255233715229 1.0 18.389411977619886 2.5365403789117407 1.17829359338023 0.8935440568863398 1.1890485573960312 0.6900814129112811 0.07615621993530035 0.2536811446353957 0.7160686499435382 0.04301774176876958 0.03274717991403161 343.98569226642155 -2.5365403789117407 0.29550450050969146 VGWSVDFSRPQLGEDEFSYGFDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VGWSVDFSRPQLGEDEFSYGFDGR 24 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;; 245.48 7.617599999999998e-38 1774026000.0 1106521.0 1346644.0 1138039.0 1278159.0 1243028.0 1168288.0 1244177.0 1124579.0 1302010.0 1232225.0 False True 1100563.6138820397 1391466.2314765127 1298264.999187686 1439973.7983474038 1401320.247795819 1087527.0004141366 1183991.405292305 1208500.7954764527 981147.0815401506 1153583.3455391019 0.9540390975111689 1.2062121361731706 1.1254193329056519 1.2482616049510178 1.214754229258522 0.942738125181501 1.0263596556510552 1.0476059663566712 0.8505211914979867 1.0 20.13769081075481 2.735734158314779 24.981805842292427 0.9866793980353168 1.1569973500499464 0.4822001045382044 0.09066986859576447 224.32305935299607 1982682.599468842 0.0285417174035675 0.02803446113629197 544.1694521801112 -2.735734158314779 0.17031795201462963 VGYELKDEIER ddPTM_BT-474_Trastuzumab_2h_R1 3 VGYELKDEIER 11 1 Q8WWY3-4;Q8WWY3;Q8WWY3-3;Q8WWY3-2 Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 0 ;; 110.64 0.0016122 880110000.0 1293300.0 1354600.0 1205760.0 1273200.0 1242990.0 1540000.0 1571950.0 1436730.0 2049170.0 1547760.0 False True 1286337.016499138 1399687.0421270083 1375520.5273462 1434386.9894558643 1401277.4087210626 1433543.4247700674 1495908.7730678485 1543946.0881671156 1544179.5109712116 1448980.6316959981 0.8877530785166606 0.9659805048523714 0.9493022178882994 0.9899283386396599 0.967078081009889 0.9893461606123322 1.0323870039014407 1.0655394933471005 1.0657005878427688 1.0 20.466606880062436 3.034203496105243 0.6309061031829526 1.0534985417147442 0.9220908975521998 0.6995824365360889 0.028231346325899402 0.4529449286034961 0.3939900766160956 0.020365270563086915 0.030374250441124226 1081.9407944023528 -3.034203496105243 -0.13140764416254447 VGYTPDWIFLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VGYTPDWIFLLR 12 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 175.93 6.1299e-05 3003600000.0 1064140.0 1453740.0 1349170.0 1240450.0 1134060.0 1132990.0 1341040.0 1172810.0 1404320.0 1242500.0 False True 1058410.7884770688 1502126.8570956122 1539121.408804135 1397490.8428137947 1278475.8188997544 1054669.0680715817 1276168.771929709 1260331.0376085076 1058244.1529239127 1163202.5862422301 0.9099109656352337 1.2913716620492477 1.323175710755875 1.201416554040205 1.0990998765141322 0.9066942255336019 1.0971165186731748 1.0835008901416343 0.9097677098041971 1.0 20.149670951358257 3.0599389835490403 4.143130640906291 1.0175965534720781 1.1981332596106136 0.33133292014690396 0.1194879853646036 0.2560015505709236 8.992257697791457 0.03586442966959649 0.04280390135682018 1147.9923223300898 -3.0599389835490403 0.18053670613853545 VGYYVNNEYTETELR ddPTM_BT-474_Trastuzumab_2h_R1 1 VGYYVNNEYTETELR 15 0 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 0 145.29 9.5046e-06 86151000.0 48179.0 36541.0 35533.0 43318.0 34779.0 44799.0 44802.0 31580.0 47895.0 36607.0 False True 47919.609617190115 37757.245095499056 40535.73754162733 48802.0543585054 39207.899498716644 41702.15057550269 42634.75609973964 33936.65995999071 36091.91901011931 34270.70991917052 1.398267200481441 1.1017351313862984 1.1828099749679315 1.424016440675081 1.1440644092635015 1.2168452498900564 1.2440581534580468 0.9902526104662646 1.0531418548155034 1.0 15.0646884572034 1.747352225725205 6.789443358653214 1.0180789232135998 1.238898545005287 0.5414544870542038 0.09680462846139744 0.10930505857140556 14.800001286206074 0.04597511778097904 0.024399529142442377 55.89233143755932 -1.747352225725205 0.22081962179168713 VHADLVISKPVS(ph)KSPER ddPTM_BT-474_Trastuzumab_2h_R1 1 VHADLVISKPVSKSPER 17 2 Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3;H7C5R6 Q4LE39-2 ARID4B AT-rich interactive domain-containing protein 4B 1 VHADLVIS(0.036)KPVS(0.568)KS(0.396)PER 85.73700000000002 0.0025894000000000004 366430000.0 327840.0 322250.0 303630.0 288120.0 222650.0 356340.0 416780.0 275570.0 496230.0 358570.0 True False 326074.9458664483 332975.8964457615 346378.46480072883 324595.96245839074 251003.15775005784 331707.05453413306 396618.7591457861 296134.4327161069 373940.7656413303 335685.7556127785 0.9713696229713825 0.9919273930403444 1.0318533301135502 0.9669637660551195 0.7477325252954611 0.9881475427177943 1.1815179897096835 0.8821775358788384 1.113960778462938 1.0 18.356751793888684 2.478029592859488 24.9999754427713 1.0311773231863668 0.942808222306614 0.18088386795722922 0.10120468082111297 69.13357856724214 1902851.5049878967 0.03554205537720012 0.030084586847042814 300.6281143878179 -2.478029592859488 -0.0883691008797528 VHAELADVLTEAVVDSILAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHAELADVLTEAVVDSILAIK 21 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 ; 143.71 1.3444e-07 5525500000.0 769980.0 870031.0 611043.0 743750.0 745552.0 837860.0 937000.0 648046.0 1222040.0 996680.0 False True 765834.5132328197 898989.4558901546 697072.5431190328 837908.6737415954 840493.6279670842 779940.7103102903 891673.7303123979 696406.4832309111 920884.6164970504 933071.0290993208 0.8207676472090963 0.9634737633617618 0.7470733967508414 0.8980116707196619 0.9007820431188394 0.835885678567424 0.9556332824663059 0.7463595605397176 0.9869394588169416 1.0 19.831627383411927 1.1020307064075647 9.879675911682542 0.9997641947027046 0.8595085714979207 0.36539977910358223 0.07123507805804159 0.28859118341901174 24.335667256565785 0.06321891582260099 0.015814454284812127 12.648257726983031 -1.1020307064075647 -0.1402556232047839 VHATSTYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VHATSTYR 8 0 Q9H074;Q9H074-3;Q9H074-2;D6REB4 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 0 107.01 0.0040859 63855000.0 33628.0 37021.0 48604.0 35303.0 24990.0 31526.0 35952.0 20212.0 54864.0 35458.0 False True 33446.95058442204 38253.22160533292 55447.02072645868 39772.356180301875 28172.328372665383 29346.681824221487 34212.8644100228 21720.32207445637 41343.50233993499 33195.040082878906 1.0075887994385362 1.1523776296044566 1.670340526416678 1.198141532018073 0.8486908978668743 0.8840682749877956 1.03066193999473 0.6543243213512225 1.2454722825070133 1.0 15.018680073459107 3.3374416516578598 5.206775164551797 0.912369878606071 1.2892063716853137 0.3402572844813929 0.2119752001145682 0.208674025604284 8.968096165132287 0.0595509576824774 0.080911572619203 2174.9118105883654 -3.3374416516578598 0.3768364930792427 VHAVIGVLMDDTDPLVTVMK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHAVIGVLMDDTDPLVTVMK 20 0 P62191;P62191-2 P62191 PSMC1 26S protease regulatory subunit 4 0 ; 216.93 1.0927e-24 208971000.0 241700.0 216960.0 231700.0 230940.0 220590.0 257580.0 253150.0 177432.0 305930.0 233830.0 False True 240398.71405539475 224181.38244491062 264321.3460274971 260176.98032118837 248680.8289606343 239774.10087809945 240904.16737308813 190672.87682143998 230537.65075197406 218906.76920806544 1.0981785301801323 1.0240952495709796 1.2074608153220983 1.1885287113889869 1.1360125128166747 1.0953252005204102 1.100487519159879 0.8710232100689868 1.0531316669008703 1.0 17.73995704180131 1.8928330116933325 7.089046865566309 0.9643730053291806 1.1250518996667487 0.5275071808868523 0.06374488439926632 0.18943245988847246 11.006494223336079 0.028062852507503424 0.01735904767390242 78.1327322728937 -1.8928330116933325 0.1606788943375681 VHAYFAPVT(ph)PPPS(ph)VGGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VHAYFAPVTPPPSVGGSR 18 0 J3KTA1;Q96IG2-2;Q96IG2 J3KTA1 FBXL20 F-box/LRR-repeat protein 20 2 VHAYFAPVT(1)PPPS(0.932)VGGS(0.068)R 62.611 0.088899 51687000.0 24551.0 28849.0 32250.0 28837.0 36626.0 49746.0 34657.0 25552.0 53421.0 35930.0 True False 24418.820143872512 29809.221525411216 36790.51967797488 32487.761243275792 41290.10400068995 46307.17610948809 32980.508507403174 27458.819990426946 40256.11035472566 33636.91663877938 0.7259529880845411 0.8862055296425331 1.0937542246532719 0.9658364823433683 1.2275234512157203 1.37667719686594 0.9804854844923733 0.816329876049643 1.1967836049608402 1.0 15.03775784513605 4.4988945625845425 2.2740813783887535 1.0699207122998597 0.7095455574761281 0.3691470471785121 0.15012070950835152 0.4831935853902863 4.098495967662325 0.04301319406093753 0.2829305171398462 31542.38748675438 -4.4988945625845425 -0.3603751548237316 VHAYFAPVT(ph)PPPSVGGSR ddPTM_BT-474_Trastuzumab_2h_R1 6 VHAYFAPVTPPPSVGGSR 18 0 J3KTA1;Q96IG2-2;Q96IG2 J3KTA1 FBXL20 F-box/LRR-repeat protein 20 1 VHAYFAPVT(0.996)PPPS(0.004)VGGSR;VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(0.995)PPPS(0.005)VGGSR;VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(1)PPPSVGGSR 148.88 2.4351e-07 8011740000.0 1374540.0 1826080.0 1844900.0 1770300.0 1917500.0 2142360.0 1799100.0 1226930.0 2000670.0 1737110.0 True False 1367139.6293657513 1886859.9689113297 2104645.8838417316 1994419.7984870498 2161682.2590870713 1994263.6957729866 1712070.6597705826 1318489.7468242997 1507631.6861045083 1626246.1525853071 0.8406720146223595 1.1602548395959091 1.2941742432385734 1.2263947836657092 1.3292466553421574 1.2262987940679384 1.0527746104418676 0.8107565664203079 0.9270624153101099 1.0 20.6331142131065 1.9987688766994758 4.2955331921349735 0.897202698929335 1.1911291582475678 0.4468118255433048 0.13244755524174978 0.17418068945882736 7.72327789816906 0.0593063253584937 0.03800542140585901 99.71692479962046 -1.9987688766994758 0.2939264593182328 VHCCLYFIPATGHSLRPLDIEFMK ddPTM_BT-474_Trastuzumab_2h_R1 1 VHCCLYFIPATGHSLRPLDIEFMK 24 1 Q9UHD8;Q9UHD8-5;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-8;Q9UHD8-9;Q9UHD8-4;K7EL40;K7EK18 Q9UHD8 SEPT9 Septin-9 0 231.37 7.9115e-34 263450000.0 184030.0 183090.0 165410.0 178240.0 171650.0 163750.0 175760.0 86944.0 217570.0 162500.0 False True 183039.20292765505 189184.0399697579 188698.29023050642 200805.1657246412 193508.6100507408 152430.34792603794 167257.81733159765 93432.20277268637 163952.78878863459 152129.11087675052 1.2031832821000759 1.2435755318587771 1.2403825220761522 1.319965419947312 1.272002504553612 1.0019801407340865 1.0994464923094427 0.6141638653786766 1.0777213371178063 1.0 17.214936722824426 2.4193386950474034 1.7757764635529059 0.8723759157058888 1.2577477679920959 0.5456667808618902 0.1321801239747067 0.2272380633013 1.4585672932184008 0.058962380767972854 0.04430285754999363 262.62659018728027 -2.4193386950474034 0.3853718522862071 VHCLNTLFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VHCLNTLFSR 10 0 P26196 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 125.68 0.0004026 245600000.0 157640.0 148660.0 154050.0 118540.0 127900.0 129660.0 124000.0 95121.0 173310.0 130770.0 False True 156791.2837554504 153608.0582331323 175738.90097339635 133547.15184582013 144187.3068773071 120696.90938680958 118001.6462739993 102219.41203465105 130600.07273502008 122424.14664217028 1.280721884169883 1.254720269213789 1.435492145900417 1.0908563017078725 1.1777685271415261 0.9858913678164392 0.9638755875415872 0.8349611971029292 1.0667836069688683 1.0 16.901528614209038 3.068736130249638 1.1972695749258089 0.9382516859404252 1.3100964864772662 0.7233773432888935 0.089156616798473 0.2174609036003172 0.6619559846392158 0.03576686542702247 0.04646909458493992 1171.4833764125158 -3.068736130249638 0.371844800536841 VHDAES(ph)S(ph)DEDGYDWGPATDL ddPTM_BT-474_Trastuzumab_2h_R1 2 VHDAESSDEDGYDWGPATDL 20 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 2 VHDAES(1)S(1)DEDGYDWGPATDL;VHDAES(1)S(1)DEDGYDWGPATDL 201.4 1.846e-21 484080000.0 180384.0 190826.0 139020.0 170070.0 160380.0 215703.0 179765.0 93740.0 220400.0 170705.0 True False 179412.83258654657 197177.52805324705 158592.8076164981 191600.84456233014 180803.44235326446 200791.95932024502 171069.08018101222 100735.35480207505 166085.37320869186 159810.46075209655 1.1226601296448164 1.2338211599246658 0.992380641856184 1.198925550058628 1.131361748801494 1.256438147886454 1.070449827726737 0.6303426842523104 1.0392647166340956 1.0 17.28600232063282 1.9806670669319382 21.942001929367834 0.8491958873851161 1.1537558459612396 0.4712391216780839 0.1238020889231619 106.51873397981194 120893.13142739046 0.04738170926396964 0.031202996238396223 95.6460561080792 -1.9806670669319382 0.3045599585761235 VHDFDVK ddPTM_BT-474_Trastuzumab_2h_R1 3 VHDFDVK 7 0 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 0 ;; 101.64 0.0089085 1024510000.0 1682290.0 1627250.0 1398680.0 1465350.0 1415020.0 1838910.0 1660920.0 1174230.0 2112150.0 1600450.0 False True 1673232.7375599903 1681412.0325566018 1595601.9864555025 1650863.1597542805 1595214.4095193672 1711790.4800285222 1580574.954269445 1261857.0052191245 1591638.9338599772 1498307.9107858168 1.1167482501526877 1.1222072715846187 1.064935968748011 1.101818356474173 1.0646772923215269 1.1424824414967818 1.054906633604091 0.8421880416805108 1.0622909499458033 1.0 20.514902705614563 1.9832964380909455 22.175946782248694 0.9501054956954623 1.0995682252605639 0.5232438832940693 0.05638471220070295 104.5671375776796 138824.5294746569 0.021407466498638537 0.014249869581883668 96.22688739168981 -1.9832964380909455 0.14946272956510154 VHDRS(ph)EEEEEEEEEEEEEQPR ddPTM_BT-474_Trastuzumab_2h_R1 5 VHDRSEEEEEEEEEEEEEQPR 21 1 Q5TAQ9;Q5TAQ8;V9GY54;Q5TAQ9-2;V9GYQ9 Q5TAQ9 DCAF8 DDB1- and CUL4-associated factor 8 1 VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR 393.96 1.394999999999999e-131 11167960000.0 1448847.0 1408591.0 1330792.0 1417773.0 1424012.0 1592036.0 1433976.0 749364.0 1597892.0 1335087.0 True False 1441046.5687340333 1455475.0999237583 1518155.9461485757 1597262.9164324603 1605351.4874196053 1481982.298569633 1364609.1025597132 805285.346873289 1204112.927255821 1249880.6046345124 1.1529473802463086 1.164491307831251 1.214640774902265 1.2779323965104081 1.2844038714314148 1.1856990924369062 1.0917915659302109 0.64428981767324 0.9633823605158872 1.0 20.253358856748648 1.9510446282320253 5.844670333401931 0.8354796352815553 1.2119962143683278 0.7076968320821426 0.09813605994175026 0.09893059873644641 8.010023129786875 0.0420723078641762 0.02606138573671295 89.33972847910641 -1.9510446282320253 0.3765165790867725 VHDRS(ph)EEEEEEEEEEEEEQPRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VHDRSEEEEEEEEEEEEEQPRR 22 2 Q5TAQ9;Q5TAQ8;V9GY54;Q5TAQ9-2;V9GYQ9 Q5TAQ9 DCAF8 DDB1- and CUL4-associated factor 8 1 VHDRS(1)EEEEEEEEEEEEEQPRR 262.79 1.1664e-37 687570000.0 29061.0 29157.0 24776.0 24551.0 24180.0 29831.0 37470.0 19704.0 25335.0 22554.0 True False 28904.538804980617 30127.473119221293 28264.24544314745 27659.15408272924 27259.179673911513 27768.853184620657 35657.43295069962 21174.412534884654 19091.528721607116 21114.58441054912 1.3689371404601047 1.4268560788802085 1.3386124440614737 1.3099549365939862 1.291011896984933 1.3151503550667556 1.6887584551692483 1.0028334976039426 0.9041868099506017 1.0 14.365952231010695 1.602431947315347 7.8021592966680435 0.9542674541214642 1.380615121735571 0.7558752614112997 0.11007718022256878 0.05308815972012851 7.460152531585338 0.05714958904720386 0.027705947530294123 40.03427308714651 -1.602431947315347 0.4263476676141069 VHDSQKPQDQDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHDSQKPQDQDK 12 1 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 ; 171.99 2.2207e-05 196423000.0 92204.0 122498.0 146203.0 150031.0 156516.0 186886.0 203816.0 122643.0 184460.0 178307.0 False True 91707.58390882744 126575.27187839517 166787.11158074296 169024.90921697512 176447.38485698658 173967.01070232372 193956.64142726964 131795.24342853524 139002.3046373653 166927.29460369685 0.54938639080296 0.7582658796387872 0.9991602150907274 1.0125660373173737 1.0570313577290726 1.042172348838097 1.1619228711981664 0.7895368084736002 0.8327116602912158 1.0 17.348860346272446 4.48583093812467 2.5029387973476194 0.9846031647422797 0.5435983054476253 0.6545304049941472 0.10207810281766069 0.22215990207964692 2.414975642016281 0.028555979623832686 0.1636643198757835 30607.71706515902 -4.48583093812467 -0.4410048592946544 VHDYDMR ddPTM_BT-474_Trastuzumab_2h_R1 4 VHDYDMR 7 0 Q96MU7-2;Q96MU7;J3QR07 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 ;;; 121.99 0.0043845 1326270000.0 908916.0 1089778.0 1032472.0 1031667.0 907834.0 995590.0 982680.0 654191.0 1194710.0 966725.0 False True 904022.4972460618 1126050.601945288 1177835.0831925 1162275.9364208002 1023441.2787463098 926767.2066667734 935144.0141978532 703010.0543345888 900289.7287938136 905027.7828450873 0.9988892212835 1.2442166122297187 1.301435276925757 1.2842433773325892 1.1308396251979937 1.0240207253675075 1.033276582137723 0.7767828432013145 0.9947647418774493 1.0 19.787602555646572 2.5543897707838212 1.593508437171165 0.9110585108780833 1.214186597443663 0.5587825282526955 0.10242879456909817 0.2518713993792862 1.291694086209185 0.04635055974936712 0.03834497647146393 358.417965896309 -2.5543897707838212 0.30312808656557966 VHELNEEIGK ddPTM_BT-474_Trastuzumab_2h_R1 8 VHELNEEIGK 10 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;B8ZZ09;Q9NQ29-3;Q9NQ29;Q9NQ29-2;A8MYV2;B8ZZ10 Q9Y383;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 ;;;;;;; 186.87 1.2922e-06 9949720000.0 17907280.0 17020960.0 14637310.0 14502340.0 14233790.0 18491810.0 18495280.0 9567860.0 25349360.0 16002450.0 False True 17810869.19416583 17587492.364212383 16698116.018220736 16338334.757041566 16046378.786216926 17213514.69973855 17600592.647569146 10281862.297808627 19102349.892021254 14981159.94061329 1.1888845232792233 1.173974006948116 1.1146076862147938 1.0905921051379361 1.0711038964823993 1.1490108087741218 1.174848457485237 0.686319506538004 1.2750915127897133 1.0 23.836645995336934 VHEMEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VHEMEK 6 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 ;;; 114.59 0.025158 1212870000.0 2093490.0 2076720.0 1916010.0 1804070.0 1816670.0 1990330.0 2172540.0 1258500.0 2842820.0 1955550.0 False True 2082218.8824486064 2145842.3697962514 2185767.55374253 2032465.0770245343 2048012.1562533022 1852743.1718328623 2067445.9402912436 1352415.660533513 2142245.1028363616 1830745.1247694143 1.1373614241965362 1.172114206813209 1.1939223675484762 1.1101846180147699 1.11867683193271 1.0120158982076868 1.1292920638265482 0.7387241633123847 1.1701492872232453 1.0 20.80399952330704 2.5975926458190908 1.215767692622401 0.9572300108865133 1.1609442855983618 0.2644228700291358 0.11022739019010346 0.4905592821751045 1.4817386565472288 0.05593547741826899 0.045533223259986856 395.9065125380612 -2.5975926458190908 0.20371427471184855 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.872)S(0.128)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPES(0.004)DAPQQPGS(0.498)S(0.498)PR 214.45 3.4685e-40 1551800000.0 613809.0 542711.0 575275.0 524915.0 519818.0 652800.0 658223.0 370693.0 673640.0 572942.0 True False 610504.3205445902 560774.807559273 656268.7196200627 591369.1851792528 586013.7410973253 607673.4725259085 626382.2388339567 398355.9940009133 507630.44831353583 536376.3510396755 1.1382014127976188 1.0454875694506387 1.2235228461284617 1.1025265823763162 1.0925420928074776 1.1329236856696525 1.167803609573427 0.7426800104605041 0.9464072145044788 1.0 19.032886104315455 1.75213753339553 24.999999999999908 0.8765116754590356 1.1271551006380212 0.6612159035380775 0.07590404484468323 2.1205274408505472 3910.3238867452797 0.032569069424642896 0.018061200708616203 56.51159087101261 -1.75213753339553 0.2506434251789855 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.14)S(0.86)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.27)S(0.73)PR 182.96 2.3589e-24 3091420000.0 1121980.0 1061430.0 1064420.0 1088620.0 1037500.0 1339080.0 1449440.0 740610.0 1321400.0 1306230.0 True False 1115939.3843436954 1096759.0559020143 1214281.0838955038 1226439.180381277 1169619.4752557152 1246512.55145526 1379325.0498014959 795878.0789413784 995758.675852839 1222865.283080234 0.9125611788837389 0.8968764352680166 0.9929802576755571 1.0029225601139327 0.9564581572792714 1.0193375907405449 1.1279452192208455 0.650830545239348 0.8142832163365177 1.0 20.22183404748444 1.7384377681493777 24.999999999998167 0.793542890088114 0.9844555717007532 0.3563666232041106 0.09963134183005541 0.03875551988382607 3201.134946732815 0.04466413044797127 0.024768522772435207 54.756763211165584 -1.7384377681493777 0.1909126816126392 VHFALLGTWDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHFALLGTWDEK 12 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 ; 189.57 7.7499e-06 727290000.0 789500.0 809500.0 823330.0 687610.0 593440.0 874160.0 819180.0 493860.0 1305360.0 841830.0 False True 785249.4197216954 836443.7181469159 939247.7074873499 774661.3554977593 669011.066405544 813731.3767512994 779553.1338285055 530714.340970266 983671.5189278509 788103.6886730772 0.9963783078389248 1.0613371440441148 1.1917818949290193 0.9829434459341885 0.8488871147551051 1.0325181679093158 0.9891504697066346 0.6734067465967896 1.2481498729996423 1.0 19.58802592809481 3.490524567167493 22.635252440283026 0.9336636705332059 1.0820462670575528 0.09506805567776111 0.14521831240989652 314.34547354705603 530858.6128131466 0.03910940242335924 0.057654920009295105 3094.030333589647 -3.490524567167493 0.14838259652434693 VHFEESSK ddPTM_BT-474_Trastuzumab_2h_R1 6 VHFEESSK 8 0 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;;;; 172.21 0.00028488 7110220000.0 7918230.0 8096270.0 7595730.0 6294762.0 5775044.0 7715780.0 8132180.0 5583715.0 10936230.0 7419850.0 False True 7875599.129478057 8365749.452651437 8665142.760731298 7091678.223783518 6510461.622032459 7182406.289592455 7738795.385455586 6000400.166830254 8241142.65447411 6946308.820546822 1.1337818880413786 1.2043445905983885 1.2474456556121223 1.020927575636531 0.9372548486146844 1.0339889105343645 1.1140874362747348 0.8638257125973698 1.1864060276297013 1.0 22.72781512112789 3.7246259334808482 21.57691510901753 1.0104387964244241 1.196106063077949 0.4484727927294454 0.08713226630182548 99.94074381615063 154751.90016992242 0.022430386916298006 0.03504245717271652 5304.273797140341 -3.7246259334808482 0.18566726665352484 VHFEESSKLEDLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VHFEESSKLEDLLR 14 1 P12956;B1AHC9;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 ;;; 256.57 1.5403e-24 4424612000.0 5182358.0 5379598.0 4989118.0 5037221.0 4654561.0 6457858.0 6058906.0 4161693.0 8853197.0 5681310.0 False True 5154456.760342099 5558654.667394336 5691542.448208956 5674932.6621220885 5247291.7536055185 6011441.476622569 5765813.569511388 4472259.66430886 6671445.226111947 5318723.931785802 0.9691153040559205 1.0451105826671427 1.0700954817743242 1.0669725924685636 0.9865696774082614 1.1302413048169209 1.0840595683212066 0.8408520016580865 1.2543319246637337 1.0 22.342648725180258 -0.2632585552227442 20.29696559599698 0.999999376135284 1.0380348401381343 0.009359965161924166 0.10276172347308907 0.0 0.0 0.09577441967017658 0.02257424720432938 0.5454330433572456 0.2632585552227442 0.038035464002850294 VHFTAER ddPTM_BT-474_Trastuzumab_2h_R1 6 VHFTAER 7 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;;;; 134.06 0.0032115000000000004 1062360000.0 358937.0 464457.0 478251.0 428411.0 372259.0 394344.0 439449.0 351519.0 579870.0 434131.0 False True 357004.5230736499 479916.1704748145 545584.5837677881 482647.788674031 419663.97709804046 367083.9274659261 418191.17301179626 377751.1327573141 436968.80835991004 406424.38790175196 0.8784032988688447 1.1808252279162643 1.3424011944373684 1.187546326060298 1.0325757744623558 0.9032034946551093 1.0289519661228812 0.9294499641311651 1.075154004945052 1.0 18.632627449502746 3.117298782978899 4.586012193861076 0.9809652205712079 1.1629243354433692 0.2933045120661407 0.11605765006731919 0.24630197012230348 8.779602483828457 0.03474880367665275 0.0421057748821254 1310.0829150135469 -3.117298782978899 0.1819591148721612 VHGEPTS(ph)DLS(ph)DID ddPTM_BT-474_Trastuzumab_2h_R1 1 VHGEPTSDLSDID 13 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 2 VHGEPT(0.171)S(0.829)DLS(1)DID 116.81 0.00081313 923510000.0 663240.0 740310.0 575890.0 624950.0 634980.0 708500.0 618570.0 330950.0 799800.0 529020.0 True False 659669.1895328911 764950.7708231542 656970.3062743855 704068.605922433 715840.9391786734 659523.0626296046 588647.4059331268 355647.16953004804 602700.0067709249 495257.49068319105 1.3319721598211463 1.5445516427584576 1.326522705124797 1.4216213165220257 1.4453914431282906 1.3316771074372136 1.1885684053382162 0.7181055839043338 1.2169427380886668 1.0 18.91781927022753 2.0773486962733596 3.2800995514296543 0.9473855701628363 1.4078185717026899 0.672214809946236 0.13103860215387256 0.12212114559363493 2.6099161256523473 0.054369914744557615 0.03569991119586442 119.49471458625031 -2.0773486962733596 0.46043300153985356 VHGEPTSDLS(ph)DID ddPTM_BT-474_Trastuzumab_2h_R1 2 VHGEPTSDLSDID 13 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 VHGEPTSDLS(1)DID;VHGEPTSDLS(1)DID 147.58 4.4944e-05 271460000.0 398630.0 480380.0 401250.0 461270.0 434360.0 437120.0 461610.0 275300.0 507910.0 392360.0 True False 396483.82037195645 496369.15790415736 457742.51227247785 519666.73470492195 489673.17134657584 406902.92326979915 439280.1607785552 295844.2839450746 382742.3861453122 367319.24888370396 1.0793984295048098 1.3513290126031798 1.246170772872844 1.4147549748187913 1.3330996751047208 1.1077636810659701 1.1959083606795533 0.8054145946452731 1.041988371991067 1.0 18.486674975029707 2.1335269826978562 1.7956362556627825 0.9380312257194658 1.2850769950502674 0.5687877675253665 0.11647467307318222 0.2254943823330701 1.4092838206847087 0.06264262655469247 0.03562929003782854 135.99626550821975 -2.1335269826978562 0.34704576933080156 VHGPGIQSGTTNKPNK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHGPGIQSGTTNKPNK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 256.26 7.4358e-27 2108220000.0 1814810.0 1692040.0 1613320.0 1429790.0 1490090.0 2275310.0 1966180.0 1543220.0 2544050.0 2138990.0 False True 1805039.2646043457 1748358.528540219 1840461.4327711754 1610801.2674003278 1679844.1290446152 2118023.1752036205 1871068.3618629985 1658382.9127123784 1917102.9660234684 2002477.8269185259 0.9014028721516459 0.873097571936987 0.9190920408858329 0.8044040467000217 0.8388827613784922 1.0577011873649054 0.9343765692238679 0.8281654310571562 0.9573653901444518 1.0 20.933354837340538 VHGPGIQSGTTNKPNKFTVETR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHGPGIQSGTTNKPNKFTVETR 22 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 108.92 0.00024417 2381300000.0 1143910.0 1417290.0 1497940.0 1461590.0 1599100.0 1752800.0 1955560.0 1231130.0 2068060.0 1861550.0 False True 1137751.3156603484 1464463.6408801044 1708836.9316721132 1646627.1441398019 1802735.9063917235 1631633.061647384 1860962.091835342 1323003.1721514687 1558414.3235842458 1742744.2852468612 0.6528504068508163 0.8403204378734553 0.9805437011833639 0.9448472492948418 1.034423651050082 0.9362435300806404 1.067834281592113 0.7591493389772122 0.8942300581771784 1.0 20.732929466113756 4.633650886566452 2.6336233856560645 0.9419720904323308 0.6264122712870206 0.5597368094928045 0.0810876626608927 0.29991268142601774 3.1225019711233384 0.021516848790773518 0.1855517489611062 43018.06649771359 -4.633650886566452 -0.31555981914531017 VHHEPQLSDK ddPTM_BT-474_Trastuzumab_2h_R1 5 VHHEPQLSDK 10 0 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-9;O43852-13;O43852-14;O43852-11;O43852-12;O43852-2;O43852-4;O43852-8;O43852-7 O43852;O43852-2 CALU Calumenin 0 ;;;; 152.54 1.0322e-05 4397170000.0 3984790.0 4249830.0 3838480.0 3522520.0 3720420.0 4476890.0 4326240.0 526842.0 5154640.0 2653920.0 False True 3963336.333391787 4391283.022473514 4378904.619333735 3968470.6708278847 4194193.43434301 4167413.131765489 4116963.24335828 566157.6252894683 3884348.0406372626 2484544.5534647782 1.595196321943507 1.7674398377560696 1.7624576758855903 1.5972628324550362 1.6881135934930493 1.6773348362595857 1.6570293487460472 0.22787179424894718 1.5634044618843372 1.0 21.244549982206912 1.7755740305223409 24.999999915058737 0.8544406142732699 1.6818123279802062 0.5499947588518395 0.30750062369889786 27.06821436361281 18290.40327147238 0.13087195207340194 0.07264387605475588 59.644998297385044 -1.7755740305223409 0.8273717137069363 VHIDIGADGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VHIDIGADGR 10 0 P31942;P31942-3;P31942-2;P31942-4;P31942-5;P31942-6 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ;;; 146.11 2.9247e-05 7374170000.0 1368280.0 1577990.0 1373020.0 1417300.0 1284100.0 1425050.0 1394270.0 849500.0 1882290.0 1394380.0 False True 1360913.332510201 1630512.4432349023 1566329.2814962203 1596730.0346809577 1447622.5235430035 1326539.647706871 1326823.8334713643 912894.0036735954 1418424.850893778 1305389.474611222 1.0425343232643387 1.2490620423613497 1.1998942169827995 1.2231828628436767 1.1089583237019296 1.016202193680126 1.0164198955767787 0.6993269222930407 1.0865913035772108 1.0 20.316048881298578 2.5525478056450663 1.6374697946567467 0.8995192911394871 1.182692077805234 0.4528675992185274 0.11037841277273691 0.2772794783940618 1.500364491175839 0.04802486137522396 0.03990445102344819 356.9010335613682 -2.5525478056450663 0.28317278666574697 VHIEIGPDGR ddPTM_BT-474_Trastuzumab_2h_R1 7 VHIEIGPDGR 10 0 P52597;P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7;P55795 P52597;P31943;P55795 HNRNPF;HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;;; 179.42 2.1084e-06 44222307000.0 11116619.0 13103304.0 11522272.0 11612041.0 10979462.9 11143284.0 11219775.6 7778170.8 12403715.0 10220370.0 False True 11056768.358476494 13539439.552525476 13144507.744216409 13082124.199990612 12377632.419939846 10372975.005549006 10677032.190522967 8358617.401847018 9346985.639515651 9568097.23650103 1.155586955815664 1.4150608232611075 1.3737849249767073 1.3672649719825203 1.2936357265184146 1.0841209855160618 1.1158992145054187 0.8735924390442014 0.9768907452004284 1.0 23.189800620430532 2.4835140586172533 1.3993218144919373 0.9495679241745146 1.3410756817976237 0.7887071822404375 0.08224627992996157 0.16820237290808482 0.6666842094831252 0.04041354579514834 0.030278027537854156 304.44865419960394 -2.4835140586172533 0.3915077576231091 VHIEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHIEVK 6 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 ; 118.06 0.022193 419990000.0 1052290.0 1042370.0 890530.0 862930.0 874640.0 1147250.0 1047980.0 800290.0 1544750.0 1084660.0 False True 1046624.5875604105 1077064.6553240293 1015908.8833744796 972176.8495217937 986020.2196025626 1067943.3078360122 997285.2037276282 860011.7035902771 1164067.0610895043 1015436.070175855 1.030714407632924 1.0606917431419403 1.0004656257666156 0.9573983809275461 0.9710313121256388 1.0517090530879645 0.9821250524958373 0.8469383044875871 1.146371588797224 1.0 19.953667982622893 4.0840056044788415 4.767788179130013 0.9798953689195411 1.044903216863299 0.05232205268847967 0.07213136511785562 0.4494132034821747 18.109175522727714 0.01838682314095655 0.04163166010850563 12134.0450909363 -4.0840056044788415 0.06500784794375791 VHIPNDDAQFDASHCDSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VHIPNDDAQFDASHCDSDK 19 0 Q16576;E9PC52;Q16576-2;Q5JP01;C9J7L0 Q16576 RBBP7 Histone-binding protein RBBP7 0 153.25 2.7544e-08 249530000.0 377360.0 293750.0 298250.0 255130.0 239840.0 391940.0 376850.0 80308.0 444840.0 222600.0 False True 375328.33568863734 303527.291174375 340241.00756452733 287429.431840932 270382.2023569456 364846.1103275193 358620.3257931991 86300.99075576104 335215.14255061006 208393.47742255186 1.8010560614984976 1.4565105152447921 1.6326854936761435 1.3792630911289119 1.2974600054717713 1.7507559010003664 1.7208807599387468 0.4141252011490344 1.6085683040400853 1.0 17.668950597363207 1.7643394532823538 24.999999999999996 0.9549894548198771 1.562789347658466 0.4116756070386104 0.30969069200924304 13.928769104677691 13516.868683388955 0.13529966951496494 0.07503594758437727 58.12185320940741 -1.7643394532823538 0.6077998928385889 VHITHEVSSLDTLHALIAHMFPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VHITHEVSSLDTLHALIAHMFPQK 24 0 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WU33 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 0 257.22 2.0995e-44 86379000.0 54504.0 89861.0 73366.0 82464.0 91671.0 82276.0 84508.0 22365.0 90907.0 50467.0 False True 54210.5565199637 92851.96906287834 83695.29509129627 92903.93394477565 103344.75847341366 76588.45377687142 80420.02518808973 24033.989867168853 68504.18794139083 47246.152853027525 1.1474067886246933 1.965281053712893 1.7714732319402613 1.9663809291262195 2.18736875349188 1.6210516444613257 1.7021497059931818 0.5086972888974337 1.4499421392995195 1.0 15.527909238283685 1.8602720047834813 7.101617633935612 0.9549170275691018 1.7985881141167723 0.5340253043211152 0.33336728633386803 0.17355030921928774 9.276476425323521 0.13928256610015138 0.0857939753636762 72.48898266912647 -1.8602720047834813 0.8436710865476705 VHLCAAQLLQLTNLEHDVYER ddPTM_BT-474_Trastuzumab_2h_R1 1 VHLCAAQLLQLTNLEHDVYER 21 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 0 135.21 4.0267e-06 206890000.0 125140.0 170740.0 124870.0 146170.0 144690.0 125270.0 125880.0 118930.0 164390.0 132850.0 False True 124466.26014436093 176422.9776854905 142450.61061050315 164675.1070128523 163115.41385518012 116610.37975386115 119790.70349170188 127805.16051430326 123878.28721314363 124371.39926139262 1.000762722647905 1.4185172695106578 1.1453647016635493 1.3240592933006483 1.3115186837478512 0.9375980365773641 0.9631692189933198 1.027608929973473 0.9960351652294864 1.0 16.924295232511753 2.7370189912666034 24.99996533079891 0.9881672279304414 1.2493671860596354 0.583965272343061 0.10752390137931937 91.25051072279093 1479764.5480406794 0.03162160009224094 0.031292302831610164 545.7817270626191 -2.7370189912666034 0.26119995812919394 VHLENMGSHDIVDGNHR ddPTM_BT-474_Trastuzumab_2h_R1 4 VHLENMGSHDIVDGNHR 17 0 Q01082;A0A087WUZ3;Q01082-2;F8W6C1;P11277-3;P11277;P11277-2;Q01082-3;O15020;O15020-2;A4QPE4 Q01082;Q01082-3;O15020 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 0 ;;; 271.31 4.588999999999999e-36 1836190000.0 469730.0 531070.0 453977.0 517845.0 520733.0 549390.0 505726.0 55676.0 470252.0 237097.0 False True 467201.0258719088 548746.3439114054 517893.0155611785 583404.1239041564 587045.2609236958 511411.9624249517 481262.10131906945 59830.82583699951 354364.69565396453 221965.26647104553 2.104838442968073 2.4722171744964756 2.3332164702838116 2.628357729925547 2.64476181457099 2.3040179689179583 2.1681865319313287 0.2695503976285596 1.5964871499396955 1.0 17.759974413127445 1.874868797875789 6.003448742144835 0.9185517802622761 2.4169904856704836 0.7943570125743799 0.3335666369005518 0.08934853953441035 3.9338402652361277 0.14014685262979673 0.0845903360525611 74.96676974675117 -1.874868797875789 1.4984387054082076 VHLQLWDTAGQER ddPTM_BT-474_Trastuzumab_2h_R1 2 VHLQLWDTAGQER 13 0 K7ES41;O00194 K7ES41 RAB27B Ras-related protein Rab-27B 0 ; 108.23 0.0012324000000000002 246170000.0 165220.0 181323.0 172293.0 159612.0 178313.0 202064.0 171879.0 109495.0 206910.0 159067.0 False True 164330.47387766754 187358.22644293206 196550.35680239764 179818.86283461275 201020.10360604583 188095.7912874925 163564.5561284576 117666.07290434414 155919.80295195314 148915.2078758897 1.1035170700270276 1.2581537447745559 1.3198810222674402 1.207525177579439 1.3498964039561485 1.263106662982716 1.09837375551849 0.7901548443756697 1.047037473042386 1.0 17.184131570242446 2.01492298988237 4.30334319546211 0.9248351653840728 1.254116409820688 0.7037155324042035 0.08838200823670077 0.09721530782011024 4.291493952460336 0.03662264824099013 0.024105317727845913 103.49586291120771 -2.01492298988237 0.3292812444366152 VHLVGIDIFTGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VHLVGIDIFTGK 12 0 P63241;P63241-2;I3L397;I3L504;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 P63241 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 0 ;; 182.35 1.6994e-05 21763957000.0 14790403.0 15691981.0 13737670.0 12853060.0 13360017.0 15869652.0 15954451.0 8309636.0 18999987.0 14398152.0 False True 14710773.113616243 16214279.101582175 15671814.526031781 14480256.078146052 15061335.973925244 14772620.31038253 15182673.25320851 8929743.233796624 14317694.790632023 13479249.612481888 1.0913643961303272 1.2029066578430025 1.1626622383726435 1.074262773851834 1.1173719907952688 1.0959527225241805 1.1263737737410278 0.6624807382102053 1.062202659810805 1.0 23.684236848380856 1.780020101253801 24.999999999993722 0.8731054144926642 1.125609326738924 0.4657425139454958 0.10408059090192331 44.05168884958936 26572.838015619123 0.04514007708886219 0.02509797627853893 60.2587476098258 -1.780020101253801 0.2525039122462598 VHLVGIDIFTGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHLVGIDIFTGKK 13 1 P63241;P63241-2;I3L397;I3L504;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 P63241 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 0 ; 198.57 8.099299999999999e-08 1121680000.0 849040.0 916910.0 867510.0 840990.0 875730.0 1049110.0 1001800.0 535980.0 1559550.0 1115100.0 False True 844468.8629772128 947428.7950662003 989647.8674679067 947459.2477713524 987249.0246416258 976587.495039301 953339.1067523591 575977.5492512931 1175219.7993993433 1043933.3633148586 0.8089298538133934 0.907556773602654 0.9479990794866674 0.9075859447224038 0.9457011906456941 0.9354883456720737 0.9132183530615109 0.5517378498397255 1.1257613183925874 1.0 19.99359819360416 1.9126589957460098 24.734023555371042 0.8151397201327905 0.9132731054526858 0.0 0.1461997107249463 173.04898951867594 49001.003594761154 0.058385652106427245 0.037680845919307655 81.7822388930204 -1.9126589957460098 0.09813338531989535 VHMFEAHSDYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHMFEAHSDYIR 12 0 P35606;P35606-2;D6R997;D6RBT6;D6RBZ7;D6RCL6;D6RBG7 P35606 COPB2 Coatomer subunit beta 0 ; 238.98 2.1558e-16 632550000.0 247670.0 297170.0 311370.0 268840.0 188268.0 253700.0 270560.0 36286.0 343950.0 168959.0 False True 246336.57223872378 307061.1238069418 355208.18952344306 302875.11643521365 212242.81384813806 236162.31614556242 257471.97916042982 38993.84557657451 259188.13119387298 158175.89196692238 1.557358515103158 1.941263741197389 2.245653146673729 1.9147994847315333 1.3418151856701532 1.4930360955065674 1.627757403222181 0.24652205270781005 1.638607046692515 1.0 17.271170205789034 2.528046008672584 1.0459978992977235 0.9321939701001261 1.920830702704887 0.4082202938814887 0.40763210404152633 0.44817953440167185 0.9974001008479348 0.24770575545848147 0.18437252585415606 337.32304239257695 -2.528046008672584 0.9886367326047609 VHNDAQSFDYDHDAFLGAEEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VHNDAQSFDYDHDAFLGAEEAK 22 0 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-9;O43852-13;O43852-14;O43852-11;O43852-12;O43852-2;O43852-4;O43852-8;O43852-7 O43852;O43852-2 CALU Calumenin 0 ;; 251.13 3.0386e-32 3435010000.0 1424250.0 1456160.0 1293070.0 1174830.0 1202230.0 1597960.0 1485750.0 349823.0 1936150.0 1047709.0 False True 1416581.996249051 1504627.4053326903 1475123.0164340753 1323563.3575419674 1355326.8643245099 1487496.7863932294 1413878.596383826 375928.5686252006 1459011.775580802 980843.3146311961 1.4442490203256324 1.5340140294461209 1.5039333953035423 1.349413650272609 1.3817975247495287 1.516548835277058 1.4414928208135407 0.38327076610248634 1.4875074885221606 1.0 19.90366316515373 1.8655989090529883 13.042798161096682 0.8923144300450615 1.4546086574954773 0.43547886181696804 0.25574246629794223 0.5222717982526118 52.19162236505809 0.09931674225276747 0.0637134918996199 73.3835823936861 -1.8655989090529883 0.5622942274504158 VHNNS(ph)PDTSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VHNNSPDTSR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 VHNNS(0.939)PDT(0.03)S(0.03)R;VHNNS(0.993)PDT(0.002)S(0.005)R;VHNNS(0.932)PDT(0.054)S(0.013)R;VHNNS(0.854)PDT(0.057)S(0.089)R 133.48 0.00020568 421842000.0 394949.0 450509.0 394120.0 392470.0 407002.0 366493.0 405791.0 180797.0 448067.0 329781.0 True False 392822.63846695924 465503.91972655914 449608.6702475487 442156.6617591448 458831.2922101462 341158.2015417247 386161.339057842 194288.99020856386 337646.8916401951 308734.09424028115 1.2723655916059395 1.507782679046349 1.4562974372944633 1.4321601339404508 1.4861698165834825 1.1050227620024646 1.250789421259386 0.6293085015008186 1.0936495124422887 1.0 18.236005286432043 2.301296483049585 1.5989926803970704 0.889969318827391 1.4343117212201186 0.6421307432796194 0.1565229690676399 0.20498329636891263 1.0511974416458623 0.078567752149265 0.050930094707845985 200.12275963572347 -2.301296483049585 0.5443424023927276 VHNNS(ph)PDTSRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VHNNSPDTSRR 11 1 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 VHNNS(1)PDTSRR 137.8 4.343e-05 48170000.0 25010.0 29255.0 26085.0 26692.0 27588.0 27287.0 29151.0 13767.0 33317.0 25727.0 True False 24875.34893887222 30228.734989979057 29757.541265115517 30071.204463207578 31101.168273112944 25400.713916688834 27740.854762365747 14794.363447409516 25106.471774927366 24085.080834007153 1.0328115197250756 1.2550813176967759 1.2355175998869425 1.2485407323503046 1.2913042927885616 1.0546243997165274 1.1517858276479933 0.6142542576199486 1.0424076193872702 1.0 14.555852145435127 1.8911871911382596 8.230972961664627 0.8494158788335686 1.1912738698110454 0.5031889003682382 0.13355990980733903 0.20480475424125347 14.043859596809842 0.05475571822474879 0.03434575345624511 77.83719753789183 -1.8911871911382596 0.3418579909774768 VHNNSPDTS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 VHNNSPDTSR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 VHNNS(0.261)PDT(0.219)S(0.52)R 100.07 0.004472 36457000.0 70875.0 78210.0 58169.0 67640.0 76119.0 61902.0 69070.0 29670.0 75765.0 59691.0 True False 70493.41687495273 80813.1725710566 66358.68958598834 76203.21706471464 85812.30345733961 57622.860441634155 65728.82022697697 31884.12606120725 57093.730948986165 55881.46927596382 1.2614810918236525 1.4461533244942182 1.1874900650568803 1.3636580793606974 1.5356128707634014 1.0311622294158138 1.1762185403963379 0.5705670676579991 1.021693446660032 1.0 15.77008233317585 2.2547344414056263 1.9152293916763123 0.8389455923905882 1.3463221333579318 0.5591705664321527 0.1737111661411682 0.21174632666783458 1.5683052482862196 0.08133502855367605 0.05334831636908452 179.7771293490216 -2.2547344414056263 0.5073765409673436 VHPAVVIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VHPAVVIR 8 0 J3KTJ3;P62829;J3KT29;J3QQT9;C9JD32 J3KTJ3 RPL23 60S ribosomal protein L23 0 107.43 0.0040047 698600000.0 613420.0 782670.0 784340.0 663250.0 568830.0 702700.0 729630.0 543910.0 882840.0 701590.0 False True 610117.4148773694 808720.6978159943 894768.2543945055 747217.3819954456 641267.1287804425 654124.0029778728 694335.0094427264 584499.3261190174 665275.9114499172 656813.9255385809 0.9289045057579728 1.231278245437399 1.3622857549203216 1.1376393723423797 0.9763299830383618 0.9959045896316795 1.0571258958515208 0.8899009344841978 1.0128833838356848 1.0 19.325125189391258 3.3136599030777605 4.479231709004061 0.9816346695387992 1.189556902352752 0.3900828104143794 0.10759051102609823 0.19820034626712515 7.481328585753494 0.03085855999643569 0.04177753564576268 2059.0168613253695 -3.3136599030777605 0.20792223281395272 VHPEEQGWICDPCHLAR ddPTM_BT-474_Trastuzumab_2h_R1 4 VHPEEQGWICDPCHLAR 17 0 Q9BV36-2;Q9BV36-5;C9JKV5;Q9BV36-3;Q9BV36;Q9BV36-4 Q9BV36-2;Q9BV36-3;Q9BV36 MLPH Melanophilin 0 ;;; 237.01 1.9232e-20 2048030000.0 1203200.0 1396360.0 1291410.0 1351920.0 1306930.0 1315150.0 1262160.0 975780.0 1443410.0 1124840.0 False True 1196722.1048880878 1442836.9984825568 1473229.3028630554 1523072.9333845186 1473359.7887189887 1224236.7760300983 1201104.4988805738 1048597.6585104421 1087700.9462030765 1053051.748176026 1.136432380422815 1.370148239136084 1.3990094080512303 1.446341963747374 1.3991333201535172 1.1625608885323815 1.1405939935629827 0.9957703031467364 1.0329036042977622 1.0 20.00614490312611 2.3610506654512204 1.748084177273109 1.0192340484421898 1.3583425710588721 0.7461704905503757 0.08532326702274941 0.17741673974001212 1.1022561881678654 0.04178166411273145 0.029560257798555836 229.6416535912852 -2.3610506654512204 0.33910852261668234 VHPEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VHPEGK 6 0 P62195-2;P62195;J3QSA9;J3KRP2;J3QLH6;J3QRW1 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ;; 110.54 0.02862 337220000.0 1310470.0 1214610.0 1124420.0 1020910.0 1078780.0 773230.0 1272740.0 1202110.0 1741250.0 1487410.0 False True 1303414.5751269038 1255037.559602749 1282728.5623661566 1150157.10132374 1216156.238569988 719778.4300876344 1211172.7038610484 1291817.552390893 1312142.2690546045 1392482.2203642325 0.9360367809837951 0.9012952131442425 0.9211812859130312 0.8259761485664734 0.8733729025652314 0.516903138554517 0.8697940168630959 0.9277084716047516 0.942304504765157 1.0 20.409227476238776 -0.7768697053895091 17.40041699013156 1.0000000000000002 0.8557335633869695 0.11461094635165592 0.11903074961557583 0.0 0.0 0.11907419807108069 0.028066057640137098 0.16715920408190177 0.7768697053895091 -0.14426643661303074 VHPEIINENGNPSYK ddPTM_BT-474_Trastuzumab_2h_R1 1 VHPEIINENGNPSYK 15 0 O95881 O95881 TXNDC12 Thioredoxin domain-containing protein 12 0 209.56 2.3266e-09 458300000.0 179310.0 170780.0 177570.0 167630.0 190160.0 223200.0 196140.0 204500.0 275130.0 210160.0 False True 178344.6148832139 176464.30906131002 202570.31253389135 188851.9408125087 214375.74883337528 207770.70935628487 186651.95887243713 219760.8284299587 207327.8980531191 196747.40887297198 0.9064648724210661 0.8969079190020869 1.0295958340405837 0.9598700277391662 1.0895988417910238 1.0560276780591809 0.9486882696023058 1.116969365384858 1.0537770191778144 1.0 17.58598511026752 4.193292944201953 1.0950068613036577 1.046001292812098 0.8727604104295932 0.48132792755126097 0.05188441741491588 0.6339149719267134 1.1157342481352022 0.016054814884381124 0.10366896958634494 15606.04821012689 -4.193292944201953 -0.1732408823825049 VHQFEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VHQFEK 6 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ;;; 143.37 0.011408 1733280000.0 4220170.0 4222930.0 3816060.0 3635450.0 3458230.0 4382060.0 4225490.0 2532150.0 5409590.0 4135930.0 False True 4197449.073624964 4363487.672234912 4353328.078211871 4095697.5972489156 3898615.0919648935 4079138.5064596874 4021086.905760659 2721111.890997169 4076469.0292922277 3871971.4064521748 1.0840599356261824 1.1269421217738553 1.1243182403045573 1.0577809511774616 1.0068811679415608 1.053504294908349 1.0385115187214453 0.702771690530246 1.0528148587304345 1.0 21.884636868031215 1.9729042793751395 23.949638855771266 0.8817879455556606 1.073683292055051 0.3461154314425544 0.09268321866769896 360.0994902956779 318287.6156469371 0.03706250768884117 0.024005581912493065 93.95162137808882 -1.9729042793751395 0.19189534649939033 VHQLYETIQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHQLYETIQR 10 0 Q13561;Q13561-3;Q13561-2;H0YI98 Q13561 DCTN2 Dynactin subunit 2 0 ; 190.86 8.554600000000002e-07 415220000.0 113800.0 116530.0 123014.0 129248.0 100228.0 126294.0 110893.0 63804.0 150426.0 114791.0 False True 113187.3134443685 120408.63060612734 140333.30194314444 145610.78354790393 112991.44170210097 117563.59304409787 105528.68193760178 68565.37847014722 113355.52790513025 107464.94010248048 1.0532487463951596 1.1204457052812156 1.3058519532911859 1.3549608217251774 1.051426089237572 1.0939716053625221 0.9819824199126501 0.6380255588916911 1.054814042580142 1.0 16.713506538993457 2.3198550607378996 1.9966964558569165 0.8527080711625815 1.1897969516069853 0.4229381811354078 0.14004055828795833 0.2659422623578524 2.165955437578762 0.06598780332607612 0.046720095759963005 208.85989759815627 -2.3198550607378996 0.33708888044440377 VHSDFTAAATR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHSDFTAAATR 11 0 K7EIG1;A0A494C0R8;O75153;I3L2B0 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ; 138.75 5.094100000000001e-05 212030000.0 238660.0 242850.0 303740.0 231690.0 250180.0 275730.0 282650.0 364770.0 286600.0 561830.0 False True 237375.0810776188 250933.11544407517 346503.95184459223 261021.93024428922 282038.9400669636 256669.43409860376 268977.13967214455 391990.9896645291 215971.2702432448 525973.5283931377 0.4513061366468491 0.47708316464268097 0.6587859143846468 0.4962643862357821 0.5362226896258441 0.48798926227853195 0.5113891197031843 0.7452675248925005 0.4106124331067429 1.0 19.004630666697796 -4.999999999998283 0.2622890504525085 3.9887140143115296 0.5077529333905411 0.6707088105415893 0.0973507907041424 116.18104628648169 1.1387823371961932 187.2686649487119 0.12476927535271475 1.0000000000039532e-05 4.999999999998283 -3.4809610809209888 VHSFPTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHSFPTLK 8 0 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 P4HB Protein disulfide-isomerase 0 ; 162.25 0.0003428 8260800000.0 5045600.0 6203600.0 6081300.0 5405600.0 5199600.0 5844200.0 6025700.0 4679400.0 7286300.0 5382700.0 False True 5018435.050218864 6410083.075844604 6937494.180392821 6089948.405751341 5861738.239556263 5440204.20976702 5734213.870590632 5028600.5895117335 5490688.996417842 5039171.47763868 0.995884953010265 1.2720509917730214 1.3767132575618726 1.2085217644955095 1.163234524875314 1.0795830691429977 1.1379279105774038 0.9979022567154433 1.089601538820969 1.0 22.26475511984293 2.707124145415436 1.3750104251032003 1.0460640925566238 1.2281720860459295 0.3657709316420259 0.09584573642920297 0.4387822410441706 1.6874092080195873 0.04337425130968239 0.040051841265219476 509.47648683992406 -2.707124145415436 0.18210799348930573 VHSGERPFACEECGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHSGERPFACEECGR 15 1 Q9BWE0;Q9BWE0-4 Q9BWE0 REPIN1 Replication initiator 1 0 ; 91.789 0.0033003 306530000.0 256640.0 278100.0 281750.0 278380.0 252960.0 314810.0 287210.0 242590.0 368680.0 292860.0 False True 255258.27875538464 287356.3903849997 321417.9509850985 313622.8794570552 285172.9565886126 293047.92568302876 273316.55505125265 260693.29764705955 277823.75405889575 274169.4240699394 0.9310238719043644 1.048097873640703 1.172333319353314 1.1439017334662795 1.0401340614694738 1.068857064120591 0.9968892628287055 0.9508474496432463 1.0133287291292705 1.0 18.064708162248724 2.2092321696340425 3.8167489856581343 0.980565123743649 1.0743389719081033 0.26157420744222626 0.06260656604105613 0.2842876432624468 8.877446011243027 0.02606382954254756 0.019350976140894822 161.8945278852124 -2.2092321696340425 0.09377384816445433 VHSPSGALEECYVTEIDQDKYAVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHSPSGALEECYVTEIDQDKYAVR 24 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 284.88 9.3921e-53 1721570000.0 740670.0 735350.0 664060.0 671180.0 650380.0 879470.0 809910.0 467120.0 1065640.0 794910.0 False True 736682.3150161736 759825.6802215382 757553.875887007 756151.3191823637 733202.0378957225 818674.3089496952 770731.5591433449 501978.8663872975 803027.3008444217 744178.1632433091 0.9899273472437478 1.021026573676972 1.0179738042640263 1.0160890987272089 0.9852506753224927 1.1001052562221307 1.0356815037199016 0.6745412472190151 1.0790793663504366 1.0 19.505288531867983 VHSPSGAVEECHVSELEPDKYAVR ddPTM_BT-474_Trastuzumab_2h_R1 3 VHSPSGAVEECHVSELEPDKYAVR 24 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 ;; 261.17 3.0754e-44 1170190000.0 407357.0 533820.0 578120.0 570900.0 614480.0 774460.0 740070.0 252644.0 813500.0 621160.0 False True 405163.83517361706 551587.8759989952 659514.2708908784 643175.8814643044 692730.3856916943 720923.4030827435 704269.9867580532 271497.5781802377 613023.8253415201 581517.0369981693 0.6967359671267768 0.9485326153921981 1.1341271689911894 1.1060310198036885 1.1912469310746525 1.2397287735613034 1.2110908914957041 0.4668781151825349 1.0541803358092328 1.0 19.149461934119334 1.765557770706598 24.999999999948844 0.7869174351021596 1.0846981974566583 0.19440087691909957 0.21037471686089218 23.092052957525986 21397.108486260964 0.09783244286352846 0.05425814952618427 58.28513016669623 -1.765557770706598 0.2977807623544987 VHSYLER ddPTM_BT-474_Trastuzumab_2h_R1 2 VHSYLER 7 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 ; 139.31 0.0027006 269170000.0 172772.0 190971.0 176126.0 166989.0 136213.0 168785.0 157005.0 92806.0 230568.0 148881.0 False True 171841.81474877388 197327.3542905925 200923.00988536444 188129.79027823222 153558.9181522957 157117.2902271531 149410.06833265524 99731.65497931921 173747.60585291128 139379.2871165631 1.2329078323170237 1.4157580970088286 1.4415557292765622 1.3497686361453336 1.1017341337373476 1.127264269157552 1.0719675170077703 0.7155414340433058 1.2465812492469266 1.0 17.08865665548183 2.926225314624872 1.3025723789996082 0.9661878813408221 1.3783055128321076 0.5419113185584754 0.13999054819338913 0.2940361702530725 1.0363388588775966 0.0587598150664533 0.06602717626430261 843.7723984934862 -2.926225314624872 0.41211763149128544 VHTGEKPYK ddPTM_BT-474_Trastuzumab_2h_R1 1 VHTGEKPYK 9 1 Q0VGE8;Q9NYT6;A0A087WWD1;B7Z6K7;A0A1W2PNY2;P35789-3;P35789;A0A494BZV4;A0A494C069;Q08AG5;B4DX44;K7ENM7;Q9UK11;Q9HCG1;Q8N8E2-2;M0QZI7;Q8N8E2;P17028;Q6AZW8;Q76KX8-2;Q76KX8;Q86YE8;Q86YE8-3;Q86YE8-2;Q86YE8-4;Q86WZ6-2;P17040-3;P17040-2;Q86WZ6;Q6U7Q0;P17040;Q96NJ3-2 Q0VGE8;Q9NYT6;A0A087WWD1;A0A1W2PNY2;A0A494BZV4;B4DX44;K7ENM7;Q9HCG1;P17028;Q6AZW8;Q76KX8-2;Q86YE8;Q96NJ3-2 ZNF816;ZNF226;ZNF814;ZNF93;ZNF844;ZNF736;ZNF223;ZNF160;ZNF513;ZNF24;ZNF660;ZNF534;ZNF573;ZNF227;ZSCAN20;ZNF322 Zinc finger protein 816;Zinc finger protein 226;Putative uncharacterized zinc finger protein 814;Zinc finger protein 93;Zinc finger protein 844;Zinc finger protein 736;Zinc finger protein 223;Zinc finger protein 160;Zinc finger protein 513;Zinc finger protein 24;Zinc finger protein 660;Zinc finger protein 534;Zinc finger protein 573;Zinc finger protein 227;Zinc finger and SCAN domain-containing protein 20;Zinc finger protein 322 0 159.79 3.9526e-05 913030000.0 946110.0 960370.0 987220.0 804380.0 747540.0 1055800.0 1026700.0 589370.0 1304000.0 968020.0 False True 941016.2488827034 992335.3348940756 1126211.994929935 906214.4255250605 842734.7879832849 982815.0310858684 977034.5986251226 633351.7821602193 982646.6727047833 906240.1348363834 1.0383740608140233 1.0950026342336254 1.2427302120461332 0.9999716307959285 0.929924371684814 1.0844973570535035 1.0781188793867762 0.6988785398194347 1.0843115802658583 1.0 19.789533859624058 2.9251083463127556 0.843977711436879 0.9238791615613121 1.1146561426767103 0.13931076467978332 0.12412600081889962 0.9107404428280429 1.4319937231722006 0.07509884286686239 0.08762313480796143 841.6050762340819 -2.9251083463127556 0.1907769811153982 VHTGERPHQCPECGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VHTGERPHQCPECGK 15 1 Q9BWE0;Q9BWE0-4;C9JZE3;C9JYJ8 Q9BWE0 REPIN1 Replication initiator 1 0 54.09 0.096497 69707000.0 37155.0 40596.0 34313.0 36075.0 33622.0 42390.0 34728.0 11699.0 57571.0 31935.0 False True 36954.96160830857 41947.21331919979 39143.97214605742 40642.09130114693 37903.56240679295 39459.67907532668 33048.07396615685 12572.038786318288 43383.39846187658 29896.88095907096 1.2360808359540973 1.4030631950077275 1.3092995285911528 1.3594090753743255 1.267809925011348 1.3198593903272806 1.1054020655666355 0.4205133907958324 1.4511011540390704 1.0 14.867707360307335 1.9935274920956605 11.030962624117008 0.8603401505310213 1.3106176230764868 0.28950529386037416 0.2409058210891733 0.2236456174256027 354.92059543374035 0.09080444948061939 0.06318197731318052 98.52070072805458 -1.9935274920956605 0.45027747254546546 VHTGFDQHEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 VHTGFDQHEQK 11 0 O96013;O96013-4;O96013-2;O96013-3;M0R2X4;M0R0L9;M0R3G6 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 ;;; 182.35 3.3685e-06 688610000.0 809278.0 768112.0 696822.0 720740.0 686153.0 858510.0 819790.0 116450.0 1026000.0 498116.0 False True 804920.937167238 793678.1435864903 794928.480714598 811985.6101008628 773530.5174025394 799163.2244151615 780133.62579808 125140.09032111848 773156.0476956347 466325.8104214367 1.7260913275201297 1.7019820173994071 1.7046632696487256 1.7412409777769753 1.6587769754873098 1.7137443533158219 1.6729368359281744 0.26835334335885147 1.6579739538690847 1.0 18.830978757291753 1.779692649042042 24.999999999999538 0.901826344712758 1.7030278038359046 0.5256955595565249 0.314270517636024 39.98929404212526 24314.445990779106 0.13347687544269074 0.07419962675957124 60.21333044682949 -1.779692649042042 0.8012014591231466 VHTVEDYQAIVDAEWNILYDKLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VHTVEDYQAIVDAEWNILYDKLEK 24 1 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ; 247.54 3.3229e-38 1396070000.0 1370730.0 1256920.0 1169620.0 1107680.0 1147800.0 1480600.0 1624390.0 784290.0 2147030.0 1374280.0 False True 1363350.1419824215 1298755.8223758151 1334292.3294807144 1247912.1744270094 1293965.526456397 1378249.6069575055 1545812.049927596 842817.702343924 1617923.2252280323 1286572.2738196969 1.0596762962525061 1.009469773913242 1.037090847231879 0.9699510861695242 1.0057464728466052 1.0712570409011133 1.201496473523593 0.655087723786933 1.2575455403096707 1.0 20.29510107276396 VHVGDEDFVHLR ddPTM_BT-474_Trastuzumab_2h_R1 7 VHVGDEDFVHLR 12 0 P04080 P04080 CSTB Cystatin-B 0 ;;;;;; 210.35 2.5761e-08 7149050000.0 2720250.0 3475230.0 2680820.0 2744490.0 2648320.0 2752460.0 2387143.0 1289550.0 3104580.0 2311273.0 False True 2705604.476248187 3590900.929729106 3058256.1538948393 3091942.1526011014 2985567.8541775555 2562188.918793907 2271667.7733181743 1385782.7692022193 2339497.8582406593 2163765.5783596286 1.2504147876773841 1.6595609827804925 1.4133953254831482 1.4289635547974344 1.3798018990767675 1.1841342446792813 1.0498677842173398 0.6404495861574776 1.0812159513205009 1.0 21.04511277585602 2.41487068665631 1.7250989657598221 0.8671628796450289 1.4467702856752815 0.7086541694223247 0.1461611702692041 0.17026645879945132 1.0305774898413669 0.06615026950805569 0.04909776723131213 259.9385467964099 -2.41487068665631 0.5796074060302526 VHVQFFDDS(ph)PTR ddPTM_BT-474_Trastuzumab_2h_R1 6 VHVQFFDDSPTR 12 0 P52701;P52701-2;A0A087WWJ1;A0A494C0M1;F8WAX8;C9J7Y7;C9J8Y8;C9JH55 P52701 MSH6 DNA mismatch repair protein Msh6 1 VHVQFFDDS(0.938)PT(0.062)R;VHVQFFDDS(1)PTR;VHVQFFDDS(0.995)PT(0.005)R;VHVQFFDDS(0.935)PT(0.065)R;VHVQFFDDS(0.988)PT(0.012)R;VHVQFFDDS(0.937)PT(0.063)R 247.9 7.0337e-17 1885334000.0 1304746.0 1469440.0 1349253.0 1450192.0 1363475.0 1696369.0 1555495.0 786953.0 1692567.0 1428187.0 True False 1297721.3925069068 1518349.4221047612 1539216.094482686 1633786.1585084647 1537105.4593005169 1579103.0038531004 1480249.7642820522 845679.4289263637 1275456.542085826 1337038.8829275921 0.9705936073193357 1.1356060332218387 1.1512126641466138 1.221943639313699 1.1496340749155007 1.1810449374482532 1.1071104836090362 0.6325017467514905 0.9539412491079354 1.0 20.350609990919335 1.8728545644218442 7.965455608656922 0.8287513508634331 1.1403420149147618 0.5516214347065482 0.1099945492056332 0.17031631527531974 10.229054793529786 0.04496392421294509 0.028088793819223502 74.61988311462086 -1.8728545644218442 0.31159066405132874 VHVQFFDDSPTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VHVQFFDDSPTR 12 0 P52701;P52701-2;A0A087WWJ1;A0A494C0M1;F8WAX8;C9J7Y7;C9J8Y8;C9JH55 P52701 MSH6 DNA mismatch repair protein Msh6 0 ; 151.26 6.549e-05 1058660000.0 515430.0 608090.0 569470.0 640300.0 540500.0 683180.0 615070.0 352410.0 725480.0 561960.0 False True 512654.98214965616 628329.9080518327 649646.4260780272 721361.9143485622 609329.4712055075 635953.3746327367 585316.714304426 378708.6237017206 546695.174933946 526095.2316818382 0.9744528200926365 1.1943273198716655 1.2348456837390764 1.3711622362409355 1.158211355114517 1.2088179788280926 1.1125679897026755 0.7198480444140364 1.0391563010108518 1.0 19.004964448554105 1.9426521278130842 7.128880740666597 0.8935251505290559 1.1963513000349864 0.4976679514382548 0.12068799831167576 0.1891927646780464 20.167431247749903 0.05121482704815868 0.03202127308568137 87.6298620098322 -1.9426521278130842 0.30282614950593045 VHVTQEDFEMAVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VHVTQEDFEMAVAK 14 0 P62195-2;P62195 P62195-2 PSMC5 26S protease regulatory subunit 8 0 ;; 118.13 0.00026343 605270000.0 479110.0 469550.0 462330.0 416860.0 431800.0 560920.0 582190.0 404620.0 665740.0 517180.0 False True 476530.5249941254 485178.68790103064 527422.0453556014 469634.4332583817 486787.1705208848 522144.9206636526 554027.2455182231 434814.79901872796 501677.29745895945 484173.12961992493 0.9842151409108577 1.002076856850555 1.089325311732245 0.9699721123042162 1.0053989797058995 1.0784260602680191 1.1442750777044022 0.8980564439006701 1.0361527039982068 1.0 18.885163490081464 1.7192834442652452 24.999999652286533 0.972173379592484 1.0371689825919566 0.17678031643852743 0.05984602625886498 1.5019893930669674 1940.1409044536274 0.027709164400595235 0.015366140853260936 52.394227832790264 -1.7192834442652452 0.0649956029994726 VHYRS(ph)PPLATGYR ddPTM_BT-474_Trastuzumab_2h_R1 3 VHYRSPPLATGYR 13 1 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 VHYRS(0.999)PPLAT(0.001)GYR;VHY(0.311)RS(0.689)PPLATGYR;VHYRS(0.994)PPLAT(0.006)GYR 127.75 0.00010464 1091830000.0 496493.0 649832.0 601123.0 622110.0 566128.0 669373.0 656348.0 488634.0 763032.0 620573.0 True False 493819.9368535586 671461.2652882605 685755.8933452192 700869.0622136245 638221.0450964511 623100.8200445535 624597.9397471519 525098.3503131758 574992.987704966 580967.4998407252 0.8499958035327991 1.1557639032688483 1.1803687702551728 1.2063825642669699 1.098548619796154 1.0725226802108196 1.0750996224718046 0.9038342944435512 0.989716271327747 1.0 19.148097933884042 1.8849623785675704 5.204019157845951 0.9579970164567747 1.1036207992028484 0.2689617281222416 0.09502828857154394 0.273255065680482 10.339834683181182 0.0436001432384762 0.025778830876016814 76.72950183629027 -1.8849623785675704 0.14562378274607368 VIADNVKDWSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIADNVKDWSK 11 1 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 144.47 3.3468e-05 601500000.0 341680.0 512750.0 455220.0 491730.0 565410.0 993210.0 803990.0 804050.0 963280.0 901480.0 False True 339840.4328442171 529816.5737860797 519311.0191568292 553982.9675817873 637411.6120523706 924551.7304648561 765097.9321599408 864052.293883172 725892.5512906926 843946.7746041418 0.4026799355962007 0.6277843458014201 0.6153362211739183 0.6564193196207618 0.7552746585841889 1.0955095253471672 0.906571308977174 1.0238232076761722 0.8601165063178028 1.0 19.686792489440354 3.112541821604015 1.9150818898183306 0.9772204974677139 0.563044796703579 0.8217829576473417 0.0881807340568134 0.12799543370837071 0.9619120278142699 0.027963965937606822 0.03560818638261434 1295.8114753058487 -3.112541821604015 -0.4141757007641349 VIAINVDDPDAANYNDINDVKR ddPTM_BT-474_Trastuzumab_2h_R1 6 VIAINVDDPDAANYNDINDVKR 22 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ;;;;; 305.12 5.479799999999998e-56 18198950000.0 8970050.0 9069730.0 8418600.0 8014080.0 8052270.0 9806190.0 10043370.0 9159310.0 12963150.0 10229190.0 False True 8921756.247466253 9371610.480282428 9603865.704217028 9028661.706297856 9077678.854956467 9128311.166588297 9557533.82370079 9842824.22223378 9768555.379810588 9576354.336549845 0.9316443328976245 0.9786198537489391 1.0028728435373555 0.9428078148527125 0.9479263753127748 0.9532135973445018 0.9980346891742274 1.0278258172493582 1.0200703771504334 1.0 23.19104510403308 2.078215507826575 3.9983105058293646 1.0180151815050378 0.9611920223989938 0.627917742000311 0.019869159996327587 0.1464270466588723 4.5505638698405315 0.008487224662498431 0.005883314220169833 119.73345313743962 -2.078215507826575 -0.05682315910604396 VIAPWR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIAPWR 6 0 P00966;Q5T6L5;Q5T6L6 P00966 ASS1 Argininosuccinate synthase 0 122.76 0.044387 481130000.0 780660.0 884330.0 700170.0 764730.0 770580.0 755380.0 655020.0 678500.0 934960.0 839530.0 False True 776457.0132994801 913764.389461226 798747.8500132622 861544.7395904668 868708.7954145056 703162.3585732555 623334.1801806053 729133.1153531882 704551.6358221354 785950.4766422057 0.9879210413062102 1.1626233670155353 1.0162826714295414 1.096181967178416 1.1052971163346907 0.8946649686852489 0.79309600121837 0.9277087259597364 0.8964326083650609 1.0 19.584078884435172 2.7323047757812446 24.163774670720105 0.8913679138623147 1.076667030229762 0.6287197642965762 0.06551839880375755 182.1213716863914 703458.8968949469 0.019723806381219594 0.019037236635039534 539.889368937057 -2.7323047757812446 0.18529911636744734 VIDFDENTALDDAEEESFRK ddPTM_BT-474_Trastuzumab_2h_R1 3 VIDFDENTALDDAEEESFRK 20 1 Q14257;Q14257-2;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 ;; 256.11 5.6747e-36 348208000.0 457261.0 540891.0 437167.0 455205.0 462835.0 557357.0 571132.0 532917.0 725078.0 561934.0 False True 454799.1575824728 558894.2299594862 498716.3136763178 512833.9063267796 521774.29381202837 518828.222467253 543504.1632238848 572685.9726376935 546392.2424474232 526070.8910240985 0.8645206669715529 1.0623933760552513 0.9480021080532897 0.9748380210287808 0.9918326649784671 0.9862325236381236 1.0331386368210738 1.088609885870799 1.0386285418373278 1.0 19.00489769836046 2.216501156643852 3.072117663486355 1.0540557156941925 0.9741245258236138 0.30465250293992185 0.05021897502716758 0.2697040587861278 5.2626634716948635 0.019166796303322856 0.013866470797054005 164.62703507863642 -2.216501156643852 -0.07993118987057879 VIDGLETLDELEKLPVNEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIDGLETLDELEKLPVNEK 19 1 B8ZZ77;H7BZ14;Q9H2H8;Q9H2H8-2 B8ZZ77 PPIL3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase-like 3 0 74.77600000000002 0.013988999999999998 56466000.0 22385.0 23817.0 23179.0 20567.0 20197.0 31546.0 27535.0 24589.0 39728.0 29244.0 False True 22264.481647207314 24609.73444731948 26442.401724520303 23170.780091217992 22768.968233002117 29365.299271296444 26203.026856085256 26423.95604041203 29937.566727926096 27377.62288295198 0.8132364793829996 0.8988996068991781 0.9658399429917622 0.8463401000985522 0.831663447566163 1.0726022268931972 0.957096493297154 0.965166192601265 1.0935049714110932 1.0 14.74070956669102 2.7443291552885176 24.999359968700407 1.0063149936254032 0.876612130841845 0.6260765345828871 0.05618117906528211 362.7420483165878 1572031.0630335251 0.01784368154927441 0.018463747113595535 555.046227591975 -2.7443291552885176 -0.12970286278355825 VIDGPHSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 VIDGPHSGR 9 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 0 ;;;; 135.43 0.00022108 910230000.0 1673390.0 2113910.0 1937970.0 2020810.0 1992220.0 1938710.0 1955420.0 1809280.0 2261930.0 2004520.0 False True 1664380.654171105 2184270.2164644217 2210819.330862793 2276644.338801683 2245917.4081869316 1804691.5409324488 1860828.8641701916 1944297.6609376816 1704507.6598091489 1876589.817444086 0.8869176623999752 1.1639571930745078 1.1781047250239944 1.2131816541040763 1.1968078411753664 0.9616867384426274 0.9916012795511376 1.036080257317933 0.9083006014232172 1.0 20.839681911550212 2.730544810707 24.90160511735482 0.9872560612015293 1.137341711718714 0.3926821145012027 0.09155489181223532 610.3359300189542 1896041.5403967183 0.02976434861588965 0.02851131169161799 537.7059110065267 -2.730544810707 0.1500856505171846 VIDPATATSVDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIDPATATSVDLR 13 0 P50991;P50991-2 P50991 CCT4 T-complex protein 1 subunit delta 0 101.38 0.004580600000000001 81120000.0 68498.0 87401.0 95814.0 78305.0 78769.0 85830.0 78290.0 75699.0 95220.0 83587.0 False True 68129.21437884326 90310.08944997987 109303.77836978258 88218.40497120745 88799.76524955904 79896.77412208752 74502.81360315646 81348.04377173333 71754.30688263004 78252.40609756886 0.8706341156321312 1.1540870620307433 1.3968104473809708 1.1273570918856157 1.1347863877672877 1.0210136417079416 0.952083358437091 1.0395596484318281 0.9169597519233252 1.0 16.25584749212714 2.710979912794863 2.805883161970293 0.9852083172064898 1.1549999750565576 0.2757680876551958 0.12211730012795319 0.36848012905923144 5.803428413344841 0.04324248951712405 0.04239131734953138 514.0198763287261 -2.710979912794863 0.16979165785006778 VIDTLHR ddPTM_BT-474_Trastuzumab_2h_R1 4 VIDTLHR 7 0 Q9H993 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 ;;; 170.73 0.00096411 3088140000.0 3668500.0 4247080.0 3713370.0 4007880.0 3683290.0 4077760.0 3739730.0 3509020.0 4766900.0 4287400.0 False True 3648749.2036086684 4388441.490385924 4236180.21880935 4515277.197062804 4152335.1489297636 3795874.049214532 3558824.9727440607 3770880.8908425122 3592161.3681874485 4013774.4613721883 0.909056858755654 1.0933453119051557 1.0554106264757905 1.1249454199574451 1.0345212938322912 0.9457118444858602 0.8866529514783463 0.9394849977577868 0.8949584493991217 1.0 21.936528121599807 2.7286978726463538 3.8345824734090774 0.9248431132903026 1.052790639223155 0.45610361768007024 0.059916237999834594 0.18146486313143853 6.087059004330874 0.01893446961123122 0.018775226157254982 535.4240473638129 -2.7286978726463538 0.1279475259328524 VIEASDVVLEVLDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIEASDVVLEVLDAR 15 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 0 ; 167.44 3.0491e-06 29240000.0 24558.4 26683.0 25429.0 27762.0 24540.0 26749.0 25125.0 24237.0 31842.0 23106.3 False True 24426.180303094734 27571.127524785887 29009.18216716972 31276.666353498018 27665.023540024344 24899.90459037306 23909.60776317929 26045.688012992254 23994.965760939984 21631.636151701303 1.1291878308138816 1.2745743008726342 1.3410535367611656 1.4458761294872347 1.2789149810958023 1.1510874358163015 1.105307411584714 1.2040553858402334 1.1092533913137592 1.0 14.400855170076989 2.7438266381018073 4.135080429594038 1.130319589313974 1.3057196572150267 0.509653030540112 0.08763186985526768 0.19597953029093662 8.183995143186248 0.02931669132617133 0.02945729069156337 554.4043613585987 -2.7438266381018073 0.17540006790105278 VIEDGPEPRPNLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIEDGPEPRPNLR 13 1 O60306 O60306 AQR Intron-binding protein aquarius 0 74.46 0.031052 473630000.0 108040.0 163090.0 159370.0 167540.0 156340.0 156480.0 142930.0 132240.0 150970.0 145030.0 False True 107458.32464437252 168518.352060013 181807.91073112714 188750.54682173656 176248.97230022016 145662.90591429852 136015.9298543768 142108.42030111392 113765.46639435676 135774.06123356998 0.7914495866740971 1.241167499365829 1.3390474519162083 1.3901811959283736 1.298104886153636 1.072833091909337 1.0017814052154683 1.0466536760408678 0.8379028023522682 1.0 17.050848362678817 2.5211021334309307 3.566908048670602 0.9861927482217988 1.2297962284808739 0.3254786250284273 0.16169560364847096 0.29255799267352167 7.626136247968907 0.05841044409188587 0.05220433364712129 331.9725186545521 -2.5211021334309307 0.24360348025907508 VIEEEWQQVDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VIEEEWQQVDR 11 0 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin 0 ;;; 212.21 1.5606e-08 1701510000.0 568800.0 644780.0 529139.0 549420.0 565332.0 617290.0 618970.0 555278.0 653230.0 578164.0 False True 565737.6439996208 666241.1125222597 603637.1718413627 618976.5156666987 637323.6792147128 574618.1952443597 589028.0564049794 596715.6640045512 492250.21933354763 541265.0785288956 1.045213641968625 1.2308961707506356 1.1152339136343106 1.1435737131776817 1.1774705306074702 1.0616206698686612 1.0882432282642338 1.102446264640543 0.9094438914689167 1.0 19.045975785344723 1.333040259490192 4.9836979908462915 0.9560765291421884 1.124442789393359 0.589850741175977 0.05531933405492395 0.13025803482879317 4.87868970173276 0.03904043472073841 0.01347770474578182 21.52981308783126 -1.333040259490192 0.16836626025117063 VIELVDKEDVHISTSQVAEIVATLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIELVDKEDVHISTSQVAEIVATLEK 26 1 O95202 O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial 0 97.509 0.0038756 10796000.0 22779.0 28017.0 37111.0 27609.0 43172.0 80913.0 42088.0 32399.0 45443.0 50622.0 False True 22656.360394984822 28949.528908365868 42335.906225405466 31104.29656918547 48669.6982995082 75319.67475871451 40052.042648226496 34816.77789878846 34244.18155500268 47391.260620325374 0.47807043109690694 0.6108621828040139 0.8933272859014908 0.656329799250905 1.0269762328000729 1.5893157044742352 0.8451356246693467 0.7346666335323455 0.7225843142124792 1.0 15.53233341710791 4.355674564241363 1.1464143888624707 0.9504770424701025 0.3972775086750017 0.3025225251052832 0.2455606384188741 1.2839115756248676 2.2085806741389904 0.08214372817575574 0.73307519522604 22681.645804741314 -4.355674564241363 -0.5531995337951008 VIENPAEAQSAALEEGHAWR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIENPAEAQSAALEEGHAWR 20 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 0 ; 148.75 1.0687000000000003e-07 359880000.0 96458.0 119272.0 124555.0 124326.0 123427.0 124653.0 127398.0 115232.0 142617.0 127686.0 False True 95938.68084549127 123241.89641855336 142091.26134853208 140065.6588525679 139144.6968408551 116036.03151159933 121235.27203237874 123831.19697623966 107470.95131989107 119536.97016251553 0.8025858503445302 1.0309939782730049 1.1886804655944772 1.1717350595564096 1.1640306480219638 0.9707125030343623 1.0142073357518957 1.0359238385236462 0.8990603590987776 1.0 16.867097355582924 2.7092590022725704 24.73725412896631 0.9928240330162402 1.0814159957140277 0.13399084105687464 0.10882274490414379 1373.7057327930052 1159720.153193519 0.03726586829213359 0.035139256618994814 511.98708068945535 -2.7092590022725704 0.08859196269778746 VIEPFSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VIEPFSR 7 0 O00231;O00231-2 O00231 PSMD11 26S proteasome non-ATPase regulatory subunit 11 0 ;; 131.04 0.0081542 156747000.0 335325.0 386209.0 358568.0 372207.0 376700.0 399123.0 401784.0 272362.0 462595.0 353960.0 False True 333519.64745810983 399063.73309672944 409051.25767107273 419328.3680367565 424670.51212417166 371532.5664444825 382348.17295606853 292687.03546621255 348594.660705421 331369.9697595975 1.0064872435485686 1.2042845445115091 1.23442464616764 1.2654386525760652 1.2815600412803305 1.1212016789391692 1.1538407455372457 0.8832636091874931 1.0519802411736938 1.0 18.338083339392146 1.8791961985308379 5.4745352270954974 0.9718059456930805 1.1921005442668702 0.5522735575012148 0.08372148891869872 0.16101760042465071 6.398808486181132 0.03840042410167966 0.022861320339467115 75.7174881977809 -1.8791961985308379 0.22029459857378964 VIEPLKDFHKDEVR ddPTM_BT-474_Trastuzumab_2h_R1 3 VIEPLKDFHKDEVR 14 2 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;; 204.43 8.2032e-09 2813080000.0 2569010.0 2380590.0 2426580.0 2161100.0 2000790.0 2841790.0 3042790.0 2575530.0 3998210.0 2915100.0 False True 2555178.735603844 2459826.499052954 2768221.3717885357 2434695.0384174236 2255578.74688856 2645343.7461541058 2895598.623113409 2767729.126876345 3012904.7187691666 2729055.82225733 0.9362867240620735 0.9013470809176471 1.014351318581241 0.8921382327766286 0.82650517021043 0.9693256270463598 1.0610257948913349 1.0141709467075049 1.1040099268753878 1.0 21.379970474258748 2.4268040463490825 4.925791919967224 1.0418397037838025 0.9158597656508146 0.5945019851812043 0.050755275479901614 0.1438560778343822 7.614600353639798 0.0181562372275237 0.015249043942929839 267.1800620336893 -2.4268040463490825 -0.1259799381329879 VIEPPAASCPS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIEPPAASCPSSPR 14 0 A0A0A0MRX4;Q3MIN7;Q3MIN7-2 A0A0A0MRX4 RGL3 Ral guanine nucleotide dissociation stimulator-like 3 1 VIEPPAAS(0.006)CPS(0.497)S(0.497)PR;VIEPPAAS(0.001)CPS(0.499)S(0.499)PR 97.86 0.0029446 124530000.0 284650.0 373760.0 324190.0 357440.0 326690.0 303380.0 314520.0 311460.0 328000.0 322370.0 True False 283117.4760275883 386200.37565730925 369833.13409000554 402691.86735085136 368292.03505666467 282408.05467970314 299305.46601692133 334702.7267618337 247168.79497482287 301796.07060515735 0.9381085560851903 1.2796733068224035 1.2254405213044066 1.3343177946067328 1.2203340961934015 0.9357578914577065 0.9917473922598068 1.1090360656144143 0.8189927538791456 1.0 18.20321449648644 2.7461836291463664 24.554195806473235 0.9903785299349334 1.2129474834935363 0.47452160407335897 0.11893726310347086 417.06099488068435 1343379.108109544 0.036387566091936475 0.037920249873331265 557.4213889904039 -2.7461836291463664 0.22256895355860296 VIEPPAASCPSS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIEPPAASCPSSPR 14 0 A0A0A0MRX4;Q3MIN7;Q3MIN7-2 A0A0A0MRX4 RGL3 Ral guanine nucleotide dissociation stimulator-like 3 1 VIEPPAASCPS(0.004)S(0.996)PR;VIEPPAASCPS(0.15)S(0.85)PR 169.05 3.559e-06 666180000.0 402520.0 460570.0 425860.0 456970.0 420150.0 470990.0 428110.0 366240.0 478230.0 425030.0 True False 400352.8770441766 475899.794029556 485817.38635852345 514822.35514580976 473653.61207584466 438431.569891203 407400.68376098224 393570.68852903775 360376.624453688 397904.22151350917 1.0061538817591669 1.1960159462982696 1.2209405180739696 1.2938348660579142 1.1903709145738826 1.1018520191204302 1.0238662012967628 0.9891091052816984 0.9056868587192229 1.0 18.602061679636588 2.284098511786288 1.7408345006982149 0.9649977402188292 1.1902580484197613 0.6409165625524491 0.071839577190448 0.23015301918202982 1.4051031385709263 0.03766436991431065 0.024654743469044515 192.35279966898628 -2.284098511786288 0.22526030820093212 VIET(ph)PENDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VIETPENDFK 10 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 VIET(1)PENDFK;VIET(1)PENDFK 174.89 3.3173e-05 326190000.0 949860.0 852520.0 680900.0 676060.0 748470.0 1010230.0 928920.0 886700.0 1300610.0 991920.0 True False 944746.0592993674 880895.6128407762 776764.8015111042 761649.1266820065 843783.2179707427 940395.1779256269 883984.5907809953 952870.0565713682 980092.0927811108 928614.8163745637 1.0173712960856927 0.948612489600274 0.8364768554347407 0.8201991969669259 0.9086471625178081 1.012685950453661 0.951938925799385 1.0261198074477211 1.0554344767053376 1.0 19.824720774229583 2.760051158591109 6.161448348350889 1.007479402636291 0.8995061214849186 0.4476941673479946 0.056953497485150384 0.174990229895878 25.903648154743937 0.019287956350122357 0.019892589268367653 575.5077264333855 -2.760051158591109 -0.10797328115137239 VIFHPEFLSSTSPLLPVDYEEFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIFHPEFLSSTSPLLPVDYEEFVR 24 0 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 0 ; 210.74 3.8316e-25 498500000.0 240470.0 290640.0 264510.0 251180.0 237570.0 280920.0 297310.0 259950.0 278520.0 287360.0 False True 239175.33623872887 300313.7767044098 301750.70883786445 282979.3622459344 267823.13131228945 261500.66161454972 282927.97946550616 279348.7889993538 209882.47797679176 269020.4387787266 0.8890600926997008 1.1163232729369772 1.1216646222410596 1.0518879663217306 0.9955493810363533 0.972047561894128 1.051696966780352 1.0383924369000173 0.7801729821332396 1.0 18.037356259875033 1.2713426651882742 24.839156172420438 0.8900864635741833 1.0344523724656907 0.32039165905599865 0.08101506806835798 162.13684474780703 122852.15508318131 0.051610136676628324 0.018843665581676092 18.678528749207455 -1.2713426651882742 0.14436590889150736 VIFLEDDDVAAVVDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VIFLEDDDVAAVVDGR 16 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ;;; 196.57 1.0595e-10 328589000.0 175175.0 214857.0 198755.0 209921.0 210525.0 213825.0 195454.0 193451.0 230228.0 221843.0 False True 174231.8772637721 222008.38536120072 226737.97639057058 236496.97707631526 237334.11087056334 199043.78103990888 185999.14331321162 207887.29594427397 173491.39429714478 207684.78981065232 0.8389245905904834 1.068967956505661 1.091740885778343 1.1387303677459057 1.142761157843781 0.9583936369215025 0.8955838484021307 1.0009750648268767 0.8353591731744925 1.0 17.664036035981596 2.581928103684809 7.038012980215268 0.9375703568125827 1.0631652243362153 0.2962035873742286 0.09128688275490439 0.32729697228084126 19.23254480487467 0.029949850026058 0.028156536233944637 381.8810461988095 -2.581928103684809 0.12559486752363258 VIFPAAEDKDQDLITIIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VIFPAAEDKDQDLITIIGK 19 1 Q00341;A0A024R4E5;Q00341-2;H0Y394;H7C2D1 Q00341 HDLBP Vigilin 0 ; 197.45 7.1783e-16 651440000.0 711350.0 655200.0 621060.0 551880.0 568560.0 761450.0 791600.0 745360.0 1146980.0 839680.0 False True 707520.1706384141 677007.9359232355 708499.8496497079 621747.9514144692 640962.745880857 708812.7537604973 753307.2837943386 800982.5480613887 864322.1477445812 786090.903513785 0.9000487952167315 0.8612336472754558 0.9012950620376738 0.7909364535771735 0.8153799300001912 0.9016931128348409 0.9582953834309679 1.0189439217284397 1.0995193353352732 1.0 19.58433662975197 2.0398635090949244 1.701246581868506 1.047636963600764 0.8542488325557359 0.8039483193244398 0.040045958008043954 0.15672701033520842 0.8528443983451008 0.025290410727216786 0.01295730715061965 109.61336470124007 -2.0398635090949244 -0.19338813104502817 VIFWSALAGAIPLNGDS(ph)EEEANRDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIFWSALAGAIPLNGDSEEEANRDDR 26 1 Q9H089 Q9H089 LSG1 Large subunit GTPase 1 homolog 1 VIFWSALAGAIPLNGDS(1)EEEANRDDR;VIFWSALAGAIPLNGDS(1)EEEANRDDR 253.47 9.142299999999997e-53 971790000.0 190290.0 253597.0 233485.0 253995.0 267560.0 258557.0 258407.0 254886.0 294193.0 253043.0 True False 189265.4997832066 262037.82284237636 266357.65851199924 286150.7409573056 301632.1800476328 240683.56316771024 245906.8661993978 273906.887604883 221693.07713423198 236893.57909898835 0.798947360680131 1.106141516536762 1.1243768595378392 1.2079294932588047 1.2732813662357338 1.0159986779005867 1.0380478320041049 1.1562444564629937 0.9358340482567292 1.0 17.853879569901462 1.2319500519966822 24.994625050698083 0.9679169756036907 1.0994396587969446 0.13474710548949498 0.12205334142209784 317.9833184254739 1202244.3074434483 0.10758822359237406 0.02937945581804591 17.058861845559733 -1.2319500519966822 0.1315226831932539 VIGHYAGEDATDAFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIGHYAGEDATDAFR 15 0 O95864-3;O95864 O95864-3 FADS2 Fatty acid desaturase 2 0 195.1 2.41e-08 565310000.0 199150.0 350410.0 345650.0 277270.0 375880.0 374150.0 303100.0 282260.0 293940.0 310220.0 False True 198077.79852764506 362073.1850226818 394314.51555634127 312372.3535708664 423746.08998469217 348285.8911543635 288437.89504555834 303323.67448723805 221502.4255942058 290421.494007296 0.6820356020986138 1.246716212449433 1.357731861080624 1.0755827651069758 1.4590727571081457 1.19924281894099 0.9931699305916806 1.0444257079664288 0.7626929485757731 1.0 18.14778870514724 1.8790543975472316 1.8012118312715106 0.9116175843444722 1.187179422209247 0.209018388820149 0.2061127715830862 0.5157166768746402 3.1388405636754584 0.13472704243226377 0.06120666187990044 75.69276980482778 -1.8790543975472316 0.27556183786477495 VIGQDSSEIHFK ddPTM_BT-474_Trastuzumab_2h_R1 4 VIGQDSSEIHFK 12 0 B8ZZN6;P63165;B8ZZJ0;B9A032;G2XKQ0 B8ZZN6;G2XKQ0 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier 0 ;;; 220.9 2.8466e-11 3267000000.0 5230050.0 5761810.0 5600870.0 5477880.0 5411020.0 6534100.0 6604200.0 5773280.0 7357100.0 6497700.0 False True 5201891.991913176 5953588.362762302 6389423.8123652395 6171379.046340315 6100081.323371735 6082413.046616941 6284729.615506022 6204111.46972183 5544041.285089239 6083011.223039156 0.855150812842696 0.9787238827068624 1.0503718599376504 1.0145269867276374 1.0028061924771612 0.9999016644223917 1.0331609436627154 1.0199079439840604 0.9113975105111445 1.0 22.536354235281255 4.708947018975503 3.582809882787419 1.0074378260317642 0.8421010862090894 0.6167254433324432 0.03487832105512742 0.15357043772748488 3.556114320152549 0.00820133246483887 0.064940345857755 51161.94175831942 -4.708947018975503 -0.16533673982267483 VIGTLEEVHMPQNGINHPGITALAQAFAVNPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIGTLEEVHMPQNGINHPGITALAQAFAVNPLLR 34 0 P46060;H0Y4Q3 P46060 RANGAP1 Ran GTPase-activating protein 1 0 ; 291.83 6.059099999999998e-90 600460000.0 211874.0 240160.0 246350.0 247580.0 237750.0 266530.0 254290.0 196915.0 258500.0 237470.0 False True 210733.2939254146 248153.5804202143 281033.9386874147 278923.60261505086 268026.05324534595 248105.4084441338 241989.0212178655 211609.7972141093 194796.13872253563 222314.46129170462 0.9479063696576442 1.1162277927327702 1.2641280151301661 1.2546354429416442 1.205616817223878 1.1160111087806752 1.0884987859622204 0.9518489979671207 0.8762189269682215 1.0 17.762242271453303 1.888632059324289 1.9931938902758541 0.9283663928249342 1.1630370941499963 0.5225276936426135 0.08865623645959274 0.25860516909007253 1.9122017239754883 0.058975814326200665 0.027809564112378615 77.38059402365364 -1.888632059324289 0.23467070132506218 VIHCSGYLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VIHCSGYLK 9 0 H7BZX8;Q14190-2;Q14190;P81133 H7BZX8 SIM2;SIM1 Single-minded homolog 2;Single-minded homolog 1 0 ;; 65.06 0.06762699999999999 51099910000.0 1061490.0 2306910.0 2526980.0 3231150.0 2664580.0 1693340.0 2110050.0 1266570.0 1171120.0 1949340.0 False True 1055775.055782627 2383694.104793455 2882756.8190960926 3640213.2587027294 3003898.4687969903 1576283.3914935978 2007978.82032623 1361087.8849121414 882513.1682040088 1824931.4522860625 0.5785286096417893 1.3061828167887837 1.5796521099381071 1.9947123242041187 1.6460335893899218 0.8637493696100271 1.1003036951392706 0.7458295944251102 0.48358702300763057 1.0 20.799410844109023 2.7242416212634772 22.164159638606197 0.8386352147400102 1.4553263779342782 0.3817231928972916 0.36926864800224896 194.48793627271596 301043.277029459 0.12705244080380093 0.12050978849189999 529.9582060011473 -2.7242416212634772 0.616691163194268 VIHDNFGIVEGLMTTVHAITAT(ph)QK ddPTM_BT-474_Trastuzumab_2h_R1 4 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 VIHDNFGIVEGLMTTVHAIT(0.045)AT(0.955)QK;VIHDNFGIVEGLMTTVHAITAT(1)QK;VIHDNFGIVEGLMTTVHAITAT(1)QK;VIHDNFGIVEGLMTTVHAITAT(1)QK 317.25 2.0407999999999995e-73 11787700000.0 2963841.0 2311290.0 2199731.0 2095897.0 2199996.0 2800290.0 2667313.0 2163943.0 3183510.0 2542129.0 True False 2947884.0093696914 2388219.8904456883 2509434.00439539 2361237.3453028365 2480152.450202093 2606712.543473618 2538284.880064836 2325427.4149399037 2398976.617348468 2379888.150793866 1.238664938260379 1.0035008954723537 1.0544335890568266 0.9921631588086155 1.042129836805474 1.095308845755667 1.0665563754406413 0.9771162624446046 1.008020741037025 1.0 21.182462341140237 4.7425812303826556 24.976875652723063 1.027774991301582 1.2386650211317074 0.7630469725672562 0.03544994184980701 202.53031799296292 1258111.918647973 0.008962692013538106 0.06878977888700893 55281.67970560512 -4.7425812303826556 0.2108900298301255 VIHDNFGIVEGLMTTVHAITATQK ddPTM_BT-474_Trastuzumab_2h_R1 17 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;;;;;;;;;;;;; 353.19 3.0633999999999983e-102 99958596000.0 16575911.0 17559826.0 16105299.0 15143037.0 14050273.0 19461955.0 19644399.0 15004592.0 22833359.0 18789712.0 False True 16486668.136932852 18144294.19327104 18372785.109431602 17060143.931549434 15839491.984057378 18116595.85936424 18694124.37147829 16124310.84681436 17206383.625785135 17590536.49347821 0.9372464644864799 1.0314804326745886 1.0444698554955056 0.9698478461913074 0.9004553095881959 1.0299058170329867 1.0627375906590024 0.9166469057264137 0.9781613899135196 1.0 24.068296148424327 VIHECQQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIHECQQR 8 0 A0A0A0MTN0;Q13617;Q13617-2;Q5T2B5 A0A0A0MTN0 CUL2 Cullin-2 0 73.248 0.043614 0.0 116160.0 125850.0 114090.0 128750.0 141430.0 135820.0 126840.0 120660.0 130100.0 116440.0 False True 115534.60746658921 130038.84117206858 130152.88031194294 145049.73679896505 159440.27217871402 126431.08308588991 120704.2646241458 129664.26189906534 98038.59825068427 109008.69951070061 1.059865937169978 1.1929216819920285 1.1939678291379556 1.3306253303638995 1.4626380545257573 1.1598256254169794 1.107290199460614 1.189485449152956 0.8993649010651715 1.0 16.73408374925665 1.4539971656056965 1.508473684331188 0.9531964632444919 1.235409956352078 0.4384503182256766 0.11368259590980419 0.36196224637322283 1.5584063010312244 0.10642216910390609 0.034630303467953955 28.444425433206092 -1.4539971656056965 0.28221349310758603 VIHLSNLPHSGYSDSAVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIHLSNLPHSGYSDSAVLK 19 0 P43243;A0A0R4J2E8;D6REM6;P43243-2;B3KM87;H0Y8T4;D6RBK5;A8MXP9 P43243;A8MXP9 MATR3 Matrin-3 0 96.447 0.00073729 777830000.0 312730.0 806510.0 828610.0 979680.0 917040.0 855950.0 864190.0 676550.0 613490.0 920250.0 False True 311046.296427569 833354.1978044091 945271.085592769 1103707.387551147 1033819.6082780741 796780.1911895698 822385.8281736084 727037.5964512894 462303.6098448296 861518.857134336 0.3610440953808023 0.9673081336563998 1.0972146201616728 1.2811180839644078 1.199996494234451 0.9248551956713913 0.9545767006297511 0.8439021275397608 0.5366146150098058 1.0 19.71652284929267 1.645537400534804 3.166620550801897 0.749914086764407 0.9953142433190962 0.08699776008992066 0.25552780606308556 0.43206163087363314 10.2130303787317 0.16289340876682123 0.07009126790830975 44.21171894463029 -1.645537400534804 0.24540015655468927 VIHLVER ddPTM_BT-474_Trastuzumab_2h_R1 3 VIHLVER 7 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJM1;X6REW1;F6S6P2;F6U341;F6TC96;F6WML8;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 ;; 129.39 0.0036649 689500000.0 614147.0 803222.0 805987.0 769839.0 600076.0 707711.0 745477.0 576721.0 888105.0 677572.0 False True 610840.500790147 829956.758712048 919462.9638354086 867300.5384666297 676492.1216708898 658788.6043424992 709415.4295113088 619758.8495498988 669243.4227473022 634328.7748614248 0.9629714510800664 1.3084015602056835 1.4495053673645406 1.3672728919732513 1.066469232487011 1.038560176442284 1.1183718248731305 0.9770309563605892 1.0550418793369494 1.0 19.274871262624128 3.1720583901221793 6.929095866985448 1.0405171240281403 1.2868822135379065 0.45483088689289397 0.12274667519475135 0.19165249290273303 16.168023458714938 0.03660651159980038 0.04406862716790099 1486.13543712717 -3.1720583901221793 0.2463650895097662 VIHVESGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VIHVESGK 8 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8YGP5;A0A2R8Y7R0 A0A2R8Y4P4 SMARCA4 Transcription activator BRG1 0 ; 124.08 0.0033261 176650000.0 760050.0 827520.0 824320.0 773920.0 745710.0 901420.0 909640.0 777450.0 1183270.0 912270.0 False True 755957.9752494927 855063.5029535954 940377.0908821166 871898.1926481952 840671.7483305453 839106.9571144377 865637.2380377485 835467.2668111069 891668.9635056675 854048.1475663596 0.8851467887420886 1.001188873707096 1.1010820567455761 1.0209005137856688 0.9843376520704004 0.9825054471524851 1.0135695985108244 0.9782437549824333 1.0440499941912054 1.0 19.703957879525188 4.72813735416914 5.200060851749899 1.0131336388449457 0.8803706600712851 0.5573525070322376 0.03456078101796445 0.11514594142067831 10.475711465463618 0.008706944486630615 0.05378209654290795 53473.34526245267 -4.72813735416914 -0.1327629787736606 VIISAPSADAPMFVMGVNHEK ddPTM_BT-474_Trastuzumab_2h_R1 3 VIISAPSADAPMFVMGVNHEK 21 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;; 343.92 3.7949999999999982e-81 39261700000.0 10670400.0 9971500.0 8589000.0 7787320.0 7798340.0 11269800.0 10668100.0 9460900.0 13354100.0 10968300.0 False True 10612951.75199288 10303395.349600958 9798256.543073695 8773193.913548084 8791412.3746175 10490745.25225565 10152043.246900432 10166920.399476767 10063160.990772212 10268293.70356594 1.0335652697884214 1.0034184497491367 0.9542244140982243 0.8543964719767762 0.8561707162276091 1.021663925391271 0.9886786977445788 0.9901275414381682 0.9800227069155131 1.0 23.291693131172266 VIISAPSADAPMFVMGVNHEKYDNSLK ddPTM_BT-474_Trastuzumab_2h_R1 5 VIISAPSADAPMFVMGVNHEKYDNSLK 27 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;; 179.5 1.1582999999999999e-17 8768640000.0 2806978.0 2726068.0 2892807.0 2908330.0 2974491.0 3817734.0 4290218.0 3279974.0 4724650.0 4229688.0 False True 2791865.5423325724 2816803.5254370957 3300089.080870809 3276524.279802208 3353274.797660575 3553823.034559175 4082683.7651156844 3524742.3152504913 3560323.3145664516 3959745.6906219153 0.7050618298404118 0.7113597047679823 0.8334093496677306 0.8274582601509439 0.8468409488019195 0.8974876954790028 1.031046962128131 0.8901436078580333 0.8991292857514972 1.0 21.916976347442215 4.592159387908404 0.38630281823190993 0.966817395474063 0.4981834106324002 0.7872919588558241 0.04625043743536434 2.3863550659271726 0.30835846678745027 0.04092759550696375 0.5180391625700755 39098.436237605725 -4.592159387908404 -0.4686339848416628 VIKDEALS(ph)DGDDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 VIKDEALSDGDDLR 14 1 Q01831-2;Q01831;E7EUB5;Q01831-3 Q01831-2 XPC DNA repair protein complementing XP-C cells 1 VIKDEALS(1)DGDDLR;VIKDEALS(1)DGDDLR;VIKDEALS(1)DGDDLR 142.74 2.4513e-05 1602890000.0 1649740.0 1625260.0 1615160.0 1398830.0 1165680.0 1869530.0 1683000.0 1617210.0 2621060.0 1687470.0 True False 1640857.9831433448 1679355.7966095845 1842560.488777611 1575921.7345747275 1314122.4384733327 1740293.791500249 1601586.8603156528 1737894.4222259866 1975134.8834046032 1579774.2198842503 1.0386661350022348 1.063035322055471 1.1663441937371373 0.9975613696811655 0.8318419315448875 1.1016091854111658 1.0138074416944218 1.100090380227449 1.2502640304823565 1.0 20.591286953594345 1.580024135928816 4.789990698742051 1.1396409547953037 1.0311845360643621 0.13653682617964824 0.09871942843150923 0.2709156383150427 13.553240890533926 0.057085571978618126 0.02572740946926891 38.021052594476274 -1.580024135928816 -0.10845641873094158 VIKDEALS(ph)DGDDLRDFPSDLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIKDEALSDGDDLRDFPSDLKK 22 3 Q01831-2;Q01831;E7EUB5;Q01831-3 Q01831-2 XPC DNA repair protein complementing XP-C cells 1 VIKDEALS(1)DGDDLRDFPSDLKK 108.05 0.0024005 537790000.0 356880.0 312330.0 309880.0 255510.0 238680.0 419800.0 387690.0 321510.0 725450.0 379900.0 True False 354958.59773309546 322725.71524252836 353508.4104747551 287857.53980196954 269074.48323280393 390780.21410290466 368935.9535803772 345502.7087947 546672.5680319675 355654.45675124635 0.998043440747215 0.9074136682849185 0.9939659232838118 0.8093741954801492 0.7565615392273894 1.0987637204732854 1.0373438222887792 0.9714561486188636 1.5370890414971632 1.0 18.44011671668627 1.3753160514873852 9.640372635260887 1.2686948247423586 0.9447917251805751 0.41258221946565343 0.15394235772534096 0.26696996940645085 23.03113556956061 0.09803465390881161 0.035899310212062524 23.731000664477587 -1.3753160514873852 -0.32390309956178354 VIKDFMIQGGDFTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIKDFMIQGGDFTR 14 1 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 ; 197.17 2.172e-08 2319000000.0 2408400.0 3050200.0 2623900.0 2489000.0 2886100.0 2638800.0 2771800.0 2580600.0 3680900.0 2832600.0 False True 2395433.4419983923 3151724.063115165 2993322.3126523495 2804107.144797083 3253627.7277450785 2456385.9670670475 2637717.4446957377 2773177.476021278 2773791.516533005 2651821.042889129 0.9033164015429166 1.1885131055757057 1.1287799079349483 1.057426990526495 1.226940911593449 0.9263015593204746 0.9946815422438817 1.045763432437331 1.0459949867171243 1.0 21.338551988346396 2.723210709647952 24.98525079171708 1.008036422394879 1.1049806743588473 0.24208870874207222 0.08668097864929257 1172.7786568011318 1908945.4172637477 0.026957255664391316 0.025505365743553915 528.7017034084298 -2.723210709647952 0.09694425196396828 VIKDFMIQGGDFVNGDGTGVASIYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIKDFMIQGGDFVNGDGTGVASIYR 25 1 C9JQD4;O43447;O43447-2 C9JQD4 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H 0 165.46 1.395e-11 125820000.0 190050.0 206000.0 175430.0 168010.0 178360.0 206020.0 189370.0 184020.0 248660.0 200080.0 False True 189026.79191654007 212856.58547037034 200129.01913510502 189280.04877354673 201073.08877745472 191778.32231891493 180209.4496363487 197752.506834626 187381.07487329084 187310.7231028939 1.009161615444213 1.13638227403267 1.0684333273603868 1.0105136835629587 1.0734734533430894 1.0238512731252811 0.9620882705009668 1.0557457873140352 1.0003755885900791 1.0 17.515073967314855 3.197240818131661 1.0147258027284152 1.0118036771567596 1.0745663893055444 0.2626212384588753 0.04066709395977551 0.7177925608157978 1.5985025917139415 0.017414925226280874 0.027011432984111253 1574.855886663273 -3.197240818131661 0.06276271214878482 VILGSEAAQQHPEEVR ddPTM_BT-474_Trastuzumab_2h_R1 6 VILGSEAAQQHPEEVR 16 0 G3V1D3;G3V180;Q9NY33-4;Q9NY33;Q9NY33-2;E9PKK8;E9PPK9;E9PQ14;E9PNX5 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 ;;;;; 335.23 1.0559999999999996e-71 12350740000.0 4266930.0 5104110.0 4976440.0 5415540.0 4904030.0 5134570.0 5355680.0 4466550.0 5422220.0 5286010.0 False True 4243957.322980494 5273997.215850347 5677079.496008106 6101146.808732178 5528529.152036899 4779629.261377688 5096605.297715587 4799866.641681333 4085986.5350255584 4948652.316219152 0.857598604992105 1.065744141807029 1.147197081799734 1.232890576841646 1.1171787385258825 0.9658446291958129 1.0298976311210064 0.9699341022503893 0.8256766234382205 1.0 22.23860425382312 2.1074651157853266 1.3256408350045779 0.9264176099388668 1.0878274018656104 0.2617168154493452 0.10278413818483755 0.6058451444550669 2.009904057731236 0.07237163451715244 0.03709503125356805 128.07522154266132 -2.1074651157853266 0.16140979192674365 VILHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VILHLK 6 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8;Q14568 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 ; 104.03 0.034176 44346000000.0 49596000.0 52624000.0 48814000.0 44883000.0 42079000.0 50664000.0 51122000.0 48288000.0 60974000.0 49605000.0 False True 49328980.64663362 54375558.0281202 55686586.90110593 50565183.198042296 47437511.228226714 47161716.93022762 48649033.55499513 51891495.761495605 45947774.7097404 46439166.43102285 1.0622279519143194 1.1708986660836267 1.1991297687011346 1.0888477783757793 1.0214979051935982 1.015559075554855 1.0475862788634382 1.1174079930691956 0.9894185929884782 1.0 25.468838740708243 3.4928496384809495 5.760144367988981 1.0440185494908893 1.1468864046037708 0.5262942819441927 0.04704133883755174 0.14455255071944428 16.82473382966427 0.013314036378166349 0.01965007424705689 3110.639184554064 -3.4928496384809495 0.10286785511288143 VILHLKEDQTEYLEER ddPTM_BT-474_Trastuzumab_2h_R1 29 VILHLKEDQTEYLEER 16 1 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;; 344.16 6.3811e-73 13249704000.0 6864357.2 9062107.3 8331551.7 8854135.100000001 8775533.4 9709669.0 10456332.799999999 8943845.5 13451964.5 10476846.200000001 False True 6827400.263536977 9363734.063320966 9504561.760214413 9975067.695825076 9893045.561828436 9038462.436132304 9950520.035393681 9611280.667137202 10136908.096064316 9808204.905836703 0.6960907045767469 0.9546837727409998 0.9690419247418457 1.0170125717794778 1.0086499677368328 0.9215205557903529 1.014509803875762 0.9799224995205479 1.0335130835237758 1.0 23.225557688396357 4.7881306440704705 2.6042505840362127 0.9916134767728908 0.6119419215997169 0.8978556534244246 0.02984900712046327 0.16614904668596733 1.3017808782573421 0.007157284052727476 0.1451418791324645 61394.66642652435 -4.7881306440704705 -0.37967155517317386 VILIECSELR ddPTM_BT-474_Trastuzumab_2h_R1 2 VILIECSELR 10 0 A0A0A0MR17;Q9NZN1 A0A0A0MR17 IL1RAPL1 Interleukin-1 receptor accessory protein-like 1 0 ; 82.749 0.017079 520680000.0 366080.0 508510.0 457380.0 521250.0 418730.0 360930.0 499910.0 372030.0 479720.0 442280.0 False True 364109.0659553118 525435.447949214 521775.1283817724 587240.1965550336 472052.7834928439 335979.75863783143 475727.443458347 399792.7677300622 361499.43391866446 414053.3117450417 0.879377258017239 1.2690043360231766 1.260164122785864 1.4182719468661895 1.1400773043049977 0.811440819593577 1.1489521517250463 0.965558676599209 0.8730746105981205 1.0 18.659457009404193 2.9877617560576057 24.584514097214836 0.9742960700352883 1.2229981698683567 0.3770560597997681 0.15090210462514042 494.2484178775509 992862.5940241865 0.044578770850142495 0.04964005410220377 972.2137434124727 -2.9877617560576057 0.24870209983306846 VILSNMVSISSEPFGHLVDDDDIS(ph)DQEDHR ddPTM_BT-474_Trastuzumab_2h_R1 6 VILSNMVSISSEPFGHLVDDDDISDQEDHR 30 0 A8MUM1;Q53HC9;C9JVR6 A8MUM1 TSSC1 Protein TSSC1 1 VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHR;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHR;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHR;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHR;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHR;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHR 205.84 2.2551e-25 1494760000.0 251802.0 310032.0 302363.0 276272.0 301589.0 341434.0 289908.0 261438.0 327519.0 344621.0 True False 250446.32600983203 320351.2277016982 344933.0822136904 311248.00687319355 339994.57149194827 317831.4712291836 275884.0424838919 280947.83111526474 246806.33097975288 322626.99273511785 0.7762720778154252 0.9929461418769505 1.0691389436744563 0.9647302113023548 1.0538317597346527 0.9851360189509268 0.8551176705490272 0.8708131602178978 0.7649897142437335 1.0 18.2995076217214 2.2398899693993743 24.848189009934302 0.8626680838924422 0.9821278545400286 0.2194079532584957 0.09167454162780031 42.279190417643505 790298.8351660738 0.032104391592586226 0.02550046857170122 173.7360604300715 -2.2398899693993743 0.1194597706475864 VILSNMVSISSEPFGHLVDDDDIS(ph)DQEDHRSEEK ddPTM_BT-474_Trastuzumab_2h_R1 5 VILSNMVSISSEPFGHLVDDDDISDQEDHRSEEK 34 1 A8MUM1;Q53HC9 A8MUM1 TSSC1 Protein TSSC1 1 VILSNMVSISSEPFGHLVDDDDIS(0.987)DQEDHRS(0.013)EEK;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHRSEEK;VILSNMVSISSEPFGHLVDDDDIS(0.996)DQEDHRS(0.004)EEK;VILSNMVSISS(0.005)EPFGHLVDDDDIS(0.966)DQEDHRS(0.029)EEK;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHRSEEK 309.04 1.3625999999999995e-104 1978163000.0 717416.0 1032196.0 993042.0 1063018.0 1069953.0 1256820.0 1269344.0 1093192.0 1446620.0 1315088.0 True False 713553.5119684102 1066552.0198843405 1132853.6819242018 1197595.9698063098 1206205.1724417144 1169938.9916360485 1207940.981355029 1174771.5381564966 1090119.884714873 1231157.9579365186 0.5795791737108706 0.8662999032812444 0.9201529946838993 0.97273949462467 0.9797322631641627 0.9502752949726483 0.9811421626024313 0.9542004992807516 0.8854427473644143 1.0 20.23158444122956 4.934452427611201 1.5380302150522924 0.9591299946691443 0.27582821166085425 0.9339110944460631 0.0301251427714813 0.39403427586820816 0.6015579785931745 0.007796026913891719 0.4676144696232871 85990.88677652391 -4.934452427611201 -0.68330178300829 VINAAHSFYNGTTTLPISDEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VINAAHSFYNGTTTLPISDEDR 22 0 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 ;;; 296.62 1.4539e-55 5141560000.0 1440610.0 1664440.0 1667550.0 1613370.0 1607040.0 1623490.0 1716530.0 1471870.0 1830080.0 1679410.0 False True 1432853.915826817 1719839.8792247737 1902326.545395568 1817622.4765774466 1811687.0183276588 1511261.9575843841 1633494.8861186118 1581708.413404418 1379081.30581562 1572228.615984761 0.9113521413228782 1.0938866407462995 1.2099554263640286 1.1560802659980742 1.1523050782235722 0.9612227777941883 1.038967787197714 1.006029528608802 0.8771506203325503 1.0 20.584379582828273 2.7341668200528315 24.911490298483184 0.9846465323808999 1.1128145005304393 0.367063564277174 0.08340320503861663 418.1724857743732 2370902.3211057913 0.027614573715752648 0.026859185294079973 542.2091223466749 -2.7341668200528315 0.12816796814953935 VINAAHSFYNGTTTLPISDEDRTPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VINAAHSFYNGTTTLPISDEDRTPR 25 1 P49915;P49915-2 P49915 GMPS GMP synthase [glutamine-hydrolyzing] 0 163.91 1.0449e-11 255940000.0 47792.0 73765.0 50368.0 67068.0 76826.0 52621.0 69539.0 44782.0 69527.0 65969.0 False True 47534.6931821904 76220.2234331159 57459.37659349581 75558.80192336296 86609.33571662224 48983.434126510154 66175.13290522294 48123.86023838837 52393.00246406858 61758.8019410976 0.769682890343737 1.2341596831138477 0.9303836018110849 1.2234499301885275 1.40238043800179 0.793140938407906 1.0715093367312634 0.7792226974267807 0.8483487505803361 1.0 15.914357145588053 2.6952771552789363 24.99998398784908 0.8906658762329136 1.1148983861047597 0.2560799055504094 0.18172836004314455 627.4511025882048 362407.27797958854 0.057376990151869804 0.05409581046112233 495.7664749548412 -2.6952771552789363 0.22423250987184606 VINDKHDDVMAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VINDKHDDVMAK 12 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 ;;; 130.07 0.00013401 1285970000.0 3557890.0 2881180.0 2525410.0 2475350.0 2506390.0 4172280.0 3354230.0 2762580.0 4984720.0 3342970.0 False True 3538734.715558737 2977078.334589909 2880965.7767427796 2788729.056196644 2825563.9099625736 3883860.1040906864 3191973.0804970716 2968737.747697 3756302.547825914 3129618.792539387 1.1307238836866107 0.9512590931799377 0.9205484653947744 0.8910762751184327 0.9028460324619594 1.2410010169127674 1.0199239243151048 0.9485940443526518 1.2002428400482708 1.0 21.57755550775801 VINIDFRDPEESK ddPTM_BT-474_Trastuzumab_2h_R1 2 VINIDFRDPEESK 13 1 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ; 116.96 0.00049616 568630000.0 837630.0 776730.0 704820.0 668980.0 695130.0 936920.0 896770.0 831200.0 1228300.0 929010.0 False True 833120.293149442 802582.9885068001 804052.5295947372 753672.7994079344 783650.685141692 872152.9256724481 853389.8091059235 893228.3647480768 925601.9233767522 869719.7864345236 0.9579180629716109 0.9228064038844563 0.9244960757889689 0.866569682745368 0.9010381244220305 1.0027976128356229 0.9812238636129621 1.027030060348435 1.0642530362236797 1.0 19.730191130756022 2.668264501239035 4.325500551502199 1.0165516294849972 0.9128332559673955 0.7475719994087469 0.029238243642171854 0.11949444633587102 4.352722000253596 0.010319826390085404 0.009801640282282626 465.86973886549 -2.668264501239035 -0.10371837351760171 VINQILTEMDGMSTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VINQILTEMDGMSTK 15 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 202.13 1.502e-07 271490000.0 281110.0 275560.0 268690.0 263300.0 260370.0 317410.0 340040.0 309040.0 376450.0 312150.0 False True 279596.53499425686 284731.8480204625 306519.2165046532 296633.7530032431 293526.5761661022 295468.1938027707 323590.966121054 332102.134073323 283678.9416715609 292228.3197549398 0.9567742620863171 0.9743472099461004 1.0489031889917364 1.0150753125227483 1.0044426098478445 1.0110867901185887 1.107322405961252 1.136447468033971 0.970744183552955 1.0 18.15673647047774 2.334471567446393 6.964254295698637 1.0739609660890275 1.002751078108681 0.15502990606920963 0.0513539679406333 0.2811509250176787 17.49821289506675 0.018279038055288552 0.015224008385575307 216.00886126560926 -2.334471567446393 -0.07120988798034644 VINQYQVVKPTAER ddPTM_BT-474_Trastuzumab_2h_R1 1 VINQYQVVKPTAER 14 1 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 0 76.72800000000002 0.013183000000000002 0.0 64076.0 90745.0 55751.0 56746.0 57872.0 70277.0 72363.0 78170.0 85306.0 68216.0 False True 63731.02193551286 93765.39246848921 63600.256203620986 63930.037781701525 65241.65616578196 65418.91640426358 68862.52523649522 84003.44233921698 64283.47934183615 63862.39647734406 0.997942849797724 1.4682410564056048 0.9958952327475517 1.001059172660103 1.0215973681621424 1.024373027208143 1.0782953511762592 1.315381930100575 1.0065935963527688 1.0 15.962679071529 -0.959216022408382 0.009368773990334789 2.602828633113262e-07 2.13502564813316 0.021959912348378574 0.1542505646098644 33251.983191329506 60.82654419179947 7311.928088213987 6560.341819600819 0.10984593188965358 0.959216022408382 2.135025387850297 VIPAKS(ph)PPPPTHSTQLGAPSR ddPTM_BT-474_Trastuzumab_2h_R1 5 VIPAKSPPPPTHSTQLGAPSR 21 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 VIPAKS(1)PPPPTHSTQLGAPSR;VIPAKS(1)PPPPTHSTQLGAPSR;VIPAKS(0.997)PPPPT(0.003)HSTQLGAPSR;VIPAKS(0.992)PPPPT(0.008)HSTQLGAPSR;VIPAKS(1)PPPPTHSTQLGAPSR 241.71 3.1076999999999996e-30 5133000000.0 2254380.0 2614660.0 2729610.0 2893270.0 2690970.0 3242220.0 3479190.0 3193850.0 3546910.0 3397360.0 True False 2242242.6685651625 2701687.377504652 3113915.3618045566 3259557.6853463445 3033649.0788712013 3018092.9627649393 3310888.287903512 3432191.305041686 2672821.5566589907 3180537.5761737707 0.7049885797175868 0.8494436279400346 0.9790531591677148 1.0248448909280412 0.9538164559340694 0.948925422348176 1.0409838615667464 1.0791230170500479 0.8403678600378087 1.0 21.60083920053621 4.523255084619597 1.9892250690671838 0.9947479150294397 0.6793731049194112 0.6699609788210348 0.06172984427955427 0.27326264991589483 1.6098797553749966 0.016300484664036156 0.1339233734699328 33362.23096394393 -4.523255084619597 -0.31537481011002855 VIPEDAS(ph)ESEEKLDQK ddPTM_BT-474_Trastuzumab_2h_R1 2 VIPEDASESEEKLDQK 16 1 A0A669KBJ7;Q9H2P0;A0A2R8Y6X0 A0A669KBJ7 ADNP Activity-dependent neuroprotector homeobox protein 1 VIPEDAS(1)ESEEKLDQK;VIPEDAS(0.999)ES(0.001)EEKLDQK 184.62 1.0863e-09 1330600000.0 2468420.0 1457740.0 1298560.0 1067450.0 1154670.0 2064430.0 1945490.0 1801560.0 3309400.0 1791230.0 True False 2455130.3009872446 1506259.994677563 1481385.9607141414 1202589.0605518853 1301710.380234716 1921720.8132454972 1851379.2162064745 1936001.555336317 2493842.7136880457 1676912.1678508418 1.4640780525397343 0.8982342805753569 0.8834010445596027 0.7171449307885596 0.7762543591671884 1.1459877565969399 1.1040406597915218 1.1545038508591232 1.4871635864412598 1.0 20.677375695719302 2.593156380850733 6.407467056892259 1.1832426814292598 0.9291676276139479 0.212195907003211 0.22152874473680123 0.3711184336222559 18.3156673274378 0.07325038500678607 0.06881587797495713 391.88296100663774 -2.593156380850733 -0.2540750538153119 VIPELNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VIPELNGK 8 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 125.58 0.0029213 1793610000.0 2934000.0 2923000.0 2655200.0 2483300.0 2327500.0 3125400.0 3179600.0 2682700.0 3807800.0 3056900.0 False True 2918203.6699980437 3020290.288009184 3029029.0805878723 2797685.525381518 2623893.328826678 2909348.4544002335 3025790.600748457 2882896.6964745745 2869418.711905888 2861806.024856237 1.0197070118142055 1.0553791073805947 1.0584327009864463 0.977594393569026 0.9168662397230396 1.0166127365485522 1.0573010799711549 1.0073697069036665 1.0026600988968262 1.0 21.448494457859105 3.7450169991558924 24.891522133146506 0.998964139472317 1.045593558329673 0.2836735441844631 0.034536219085100045 745.6494029452888 2874719.0276359934 0.009920220192313029 0.0173614551690568 5559.260169023373 -3.7450169991558924 0.04662941885735594 VIPEYCR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIPEYCR 7 0 B0YIW6;P48444;Q6P1Q5 B0YIW6 ARCN1 Coatomer subunit delta 0 ; 133.47 0.0076042 744020000.0 560220.0 666780.0 569350.0 554750.0 458680.0 498890.0 525410.0 451080.0 685570.0 601990.0 False True 557203.8377662936 688973.3692229775 649509.5311210849 624981.293120201 517090.179190642 464402.9085607393 499993.91103888676 484741.8801378278 516620.45966734586 563570.4828104308 0.9887030189863957 1.2225150007629635 1.1524903289506765 1.108967400144033 0.9175253051082459 0.824036962058127 0.8871896706610708 0.8601264525432594 0.9166918343399514 1.0 19.10423652643536 3.2269484319374677 4.038794236343981 0.8845661051471395 1.1314989191195173 0.7016737523073353 0.06914922898378349 0.1001031320709705 3.6543708057325 0.019022447773614753 0.0244400804477586 1686.3527762210263 -3.2269484319374677 0.24693281397237776 VIPNLPSEGQPALVEVHSMEALLQHTSEQEEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIPNLPSEGQPALVEVHSMEALLQHTSEQEEMR 33 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 ; 213.15 2.4763e-28 245570000.0 49607.0 89757.0 116636.0 135590.0 116716.0 115742.0 120388.0 92252.0 99250.0 114072.0 False True 49339.921423855834 92744.50748574761 133057.33498171403 152755.6800976441 131579.09077006852 107741.02796736163 114564.37251317927 99136.31268616416 74791.16738186339 106791.82729804737 0.46201963832074994 0.8684607224381055 1.2459505408626612 1.4304060897030568 1.232108243665893 1.0088883268816546 1.0727822101352322 0.9283136658902064 0.7003454222496566 1.0 16.704441717270015 -1.1587466022592547 6.508843675577275 0.9999999476306434 1.0156554439978163 0.0 0.26654134630878423 2.1181035953038357e-07 2.719910865161342e-08 0.2700127505673194 0.06364240321419995 0.06938305171317173 1.1587466022592547 0.015655496367172894 VIPSQEHLNGPLPVPFTNGEIQKENS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 VIPSQEHLNGPLPVPFTNGEIQKENSR 27 1 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 VIPSQEHLNGPLPVPFT(0.012)NGEIQKENS(0.988)R 119.36 0.00015783 240060000.0 115460.0 122260.0 100010.0 139140.0 103570.0 128610.0 141490.0 136280.0 184570.0 154960.0 True False 114838.37618881198 126329.3501922694 114090.53869749671 156755.1097336546 116759.02559251526 119719.49341537549 134645.588155711 146449.90561581822 139085.19661128966 145070.32013206923 0.7916048995016026 0.8708145820403621 0.7864498995634039 1.0805456939155285 0.8048443367755727 0.825251459474172 0.9281401463313258 1.0095097707270035 0.9587432941808439 1.0 17.146392863737137 7.999999962521228 0.13380787801831 1.04711670518205 0.2307645912203316 0.3095136438848588 0.08253526372320717 97.65502420091642 0.8782947634053466 0.40169894530844535 15.131909062752545 99999991.37019418 -7.999999962521228 -0.8163521139617185 VIPSQEHLNGPLPVPFTNGEIQKENS(ph)REALAEAALESPRPALVR ddPTM_BT-474_Trastuzumab_2h_R1 3 VIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVR 44 3 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 VIPSQEHLNGPLPVPFTNGEIQKENS(0.998)REALAEAALES(0.001)PRPALVR;VIPSQEHLNGPLPVPFT(0.009)NGEIQKENS(0.99)REALAEAALES(0.001)PRPALVR;VIPSQEHLNGPLPVPFT(0.003)NGEIQKENS(0.997)REALAEAALESPRPALVR 205.44 2.5578e-36 1116840000.0 301250.0 414040.0 333991.0 434530.0 347520.0 456660.0 500150.0 412980.0 703670.0 519220.0 True False 299628.10347202123 427821.0711075351 381014.02969818615 489541.453446636 391774.6120875819 425092.1690620114 475955.83374145837 443798.66466994816 530259.9571949191 486082.9350733933 0.6164135415014736 0.8801400753617049 0.7838457230362492 1.0071150787729681 0.8059830613646788 0.8745260086076198 0.979165898242435 0.9130101730539858 1.0908837133211755 1.0 18.89084296071895 6.178980379770717 0.3290383255666647 0.992150357899529 1.1663748844971429e-24 0.5890284998437201 0.0830682716711801 13.383595821035128 0.5546943320006343 0.07488160999716498 6.3784188769053225 1510011.934440329 -6.178980379770717 -0.992150357899529 VIPVLLQLFEVHEEHVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIPVLLQLFEVHEEHVR 17 0 Q8IZE3;Q8IZE3-2;X6RHX1 Q8IZE3 SCYL3 Protein-associating with the carboxyl-terminal domain of ezrin 0 ; 166.6 1.345e-09 119900000.0 69932.0 89653.0 81759.0 85292.0 81725.0 82295.0 84042.0 34364.0 87225.0 59108.0 False True 69555.49388217553 92637.04590861715 93269.9565380326 96089.95845481411 92132.1943279743 76606.14035159255 79976.56738838274 36928.41617685626 65729.5675051186 55335.67683509523 1.2569737619629466 1.6740925783682559 1.68553023786055 1.7364919695691068 1.6649691410215446 1.3843896873238761 1.4452984396796906 0.6673527512260474 1.1878334424461454 1.0 15.755922315651283 1.8968608390044406 5.263754759752018 0.9324144899040054 1.5768832808379605 0.6933956763625324 0.18329705860733236 0.11817943143283409 4.771691231032525 0.08304431024776743 0.0493857351437929 78.86073836382639 -1.8968608390044406 0.644468790933955 VIQHNALEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIQHNALEDR 10 0 O60313-10;O60313-9;O60313-2;E5KLJ9;O60313-13;O60313;O60313-11;A0A2R8YDM2;A0A2R8Y3X5;C9JMB8;A0A2R8YE78;A0A2R8YFD1 O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 0 108.7 0.0021169 380620000.0 482870.0 474620.0 491290.0 448270.0 399590.0 603960.0 548250.0 513380.0 714560.0 442640.0 False True 480270.2815719009 490417.4397861516 560459.3616307682 505020.9360378413 450475.41794451216 562209.6667689149 521729.0529816145 551691.022490818 538466.2626134437 414390.33623683057 1.1589804094693437 1.183467366154674 1.3524913894479837 1.2187082851015472 1.0870799305683094 1.3567151972569247 1.259028040372636 1.3313317764618864 1.2994180016439905 1.0 18.66063083357671 2.7142233871342687 24.97863012911841 1.2753527910824505 1.2087138020909534 0.01789112732813458 0.11184622004067599 2102.2507185944705 2157654.1619495125 0.034578331314968604 0.03261299171698306 517.8731407666321 -2.7142233871342687 -0.06663898899149712 VIQLMPS(ph)PIMHPLILNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VIQLMPSPIMHPLILNPR 18 0 P41212 P41212 ETV6 Transcription factor ETV6 1 VIQLMPS(1)PIMHPLILNPR;VIQLMPS(1)PIMHPLILNPR 191.5 1.4306999999999995e-14 730110000.0 512730.0 558760.0 524410.0 562630.0 495770.0 577060.0 533380.0 484090.0 710580.0 493620.0 True False 509969.5186496587 577357.988822447 598242.3697465672 633858.9003122471 558903.3708409895 537169.2004531256 507578.3716905306 520215.25395921234 535467.0802841758 462116.74899065576 1.1035512557454839 1.2493768946559465 1.2945697619773222 1.3716423429722173 1.2094419257941478 1.1624101520371153 1.0983769205491276 1.1257225692326753 1.1587268400328057 1.0 18.81789785402535 2.6724945167018834 2.4396681932898088 1.1093942753383885 1.2586208780580066 0.4762895791722417 0.07382909372702506 0.27300197564768314 3.2013636635430394 0.02681836477904601 0.02558381207883748 470.4294661587068 -2.6724945167018834 0.14922660271961807 VIQPMGMS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 6 VIQPMGMSPR 10 0 Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;Q9NPQ8-2;H0YE35 Q9NPQ8-4 RIC8A Synembryn-A 1 VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR 147.58 2.7947e-05 770799000.0 745729.0 862744.0 828907.0 864115.0 857299.0 890704.0 883184.0 792290.0 1105279.0 909307.0 True False 741714.0779222804 891459.9125002398 945609.9006111976 973511.8704002935 966470.9460407221 829131.7289716866 840461.0158294827 851414.7029671019 832897.8004298081 851274.2487631107 0.8712986196868757 1.047206483451741 1.1108169922738238 1.1435937029867782 1.1353226618154966 0.973988970271805 0.9872975918755448 1.000164992896467 0.9784130104252498 1.0 19.699264463681374 2.710808979968591 24.796100573432405 0.9889418015795514 1.0681295977783043 0.20498237939359099 0.07197052011437978 1080.272784101857 965222.7874479904 0.024577970088854754 0.02317733836285231 513.8176044019776 -2.710808979968591 0.07918779619875294 VIQWCTHHKDDPPPPEDDENKEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIQWCTHHKDDPPPPEDDENKEK 23 2 E5RJR5;P63208;E7ERH2;F8W8N3;P63208-2;E5RGM3 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 197.4 9.562799999999999e-25 224400000.0 529930.0 341850.0 326200.0 298960.0 281810.0 523860.0 498230.0 252970.0 878510.0 410570.0 False True 527076.9157607579 353228.27059731114 372126.12461877224 336808.3053469405 317696.83308126585 487646.7912337962 474128.7114765699 271847.90595563164 662012.9819308897 384367.07109333883 1.3712853035549544 0.9189868153703884 0.9681529782461671 0.8762673253691671 0.8265453962473207 1.2687007496419411 1.2335310361730585 0.707261174018772 1.7223457255268568 1.0 18.55212521948388 2.7341739395844025 24.935970554591993 1.1341091880002545 0.9803955903587114 0.09446463569850827 0.2766648893317405 1118.565131106324 6358435.239435898 0.08755121511600725 0.08520181001948476 542.2180110311206 -2.7341739395844025 -0.15371359764154313 VIQYLAYVASSHK ddPTM_BT-474_Trastuzumab_2h_R1 2 VIQYLAYVASSHK 13 0 P35579;P35579-2;Q5BKV1 P35579 MYH9 Myosin-9 0 ; 231.26 2.7135e-12 854480000.0 905980.0 1312270.0 1564440.0 1127960.0 761930.0 1229870.0 1472320.0 1052230.0 2135900.0 1358630.0 False True 901102.3043438417 1355948.1136660343 1784699.5536437547 1270759.620347657 858957.2691870725 1144851.9817025722 1401098.2567914096 1130752.7457156752 1609536.0645936716 1271921.070218336 0.7084577222933809 1.0660630957495454 1.4031527548619003 0.999086853816739 0.6753227769390008 0.9000967186635634 1.1015606939752158 0.8890117257995984 1.265437063887448 1.0 20.278577715467122 -0.3792618248273749 6.875048550614593 0.9999999986898408 0.9984211325959118 0.0 0.2145759251463078 0.0 0.0 0.20807659791599983 0.049044124464210054 0.4175785435217817 0.3792618248273749 -0.0015788660939289878 VIREPK ddPTM_BT-474_Trastuzumab_2h_R1 3 VIREPK 6 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 97.068 0.037842 1443450000.0 2291940.0 2103290.0 1896150.0 1755360.0 1912240.0 2473350.0 2430880.0 2235150.0 2892620.0 2424480.0 False True 2279600.4496984724 2173296.736184345 2163111.4383687475 1977588.3960188841 2155752.42926553 2302373.13613964 2313289.0475366106 2401948.242861727 2179772.560122169 2269747.610698243 1.0043409403555659 0.9575059032734363 0.9530184890042945 0.8712811885769617 0.949776274289085 1.01437407634559 1.019183382607449 1.0582446398623213 0.9603590063705828 1.0 21.114100452286245 2.7423687359724855 5.244221370002999 1.0187448889800532 0.9434807590462665 0.3985122679949038 0.03812901305375632 0.16276242971757823 15.222753243332013 0.012585897856697352 0.01264764666960064 552.5463774434492 -2.7423687359724855 -0.07526412993378673 VIREPKPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VIREPKPR 8 2 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 140.5 0.00036476 7315860000.0 3296970.0 3534340.0 3493910.0 3581150.0 3349670.0 4226190.0 3997130.0 3540940.0 5191310.0 4130030.0 False True 3279219.4798478065 3651978.370346357 3985822.1583898654 4034523.222816416 3776230.619450426 3934043.432681171 3803773.5513805742 3805182.9233289943 3911981.2104900824 3866447.949503425 0.8481219772450221 0.9445305919132798 1.0308743866322503 1.0434702019807554 0.9766666120348043 1.0174825793753224 0.9837901870291826 0.9841547003930833 1.0117765094943294 1.0 21.88257736080235 4.600776760228019 2.8689153681248794 1.0037078742838992 0.8412069565028117 0.8432664040579388 0.02093274192516976 0.1204743016866521 1.5899411055164174 0.0054772884814961965 0.038261594709494424 39881.9844868957 -4.600776760228019 -0.16250091778108744 VIS(ph)DSESDIGGS(ph)DVEFKPDTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VISDSESDIGGSDVEFKPDTK 21 1 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1 P52701 MSH6 DNA mismatch repair protein Msh6 2 VIS(1)DSESDIGGS(1)DVEFKPDTK;VIS(0.641)DS(0.15)ES(0.464)DIGGS(0.745)DVEFKPDTK 225.84 1.5085e-25 215818000.0 619630.0 517460.0 439720.0 359260.0 412100.0 665070.0 717020.0 648890.0 804380.0 676480.0 True False 616293.9809273649 534683.3432888248 501628.75388524425 404742.2791642425 464578.4922919334 619095.2763063819 682335.0033176051 697313.4667966553 606151.3271397805 633306.4672363333 0.9731370399812769 0.8442726720005135 0.7920790009839732 0.6390938670348416 0.7335761062401482 0.9775603255845986 1.077416762053964 1.1010679708351 0.9571216440990185 1.0 19.272544286516567 2.5876806022193097 4.266062192141985 1.0479426032469743 0.791054262433805 0.6253251743733581 0.08788483248556313 0.15237478372814983 4.655098994444042 0.03188744112132088 0.02964897291638086 386.9729446419596 -2.5876806022193097 -0.25688834081316925 VIS(ph)DSESDIGGSDVEFKPDTK ddPTM_BT-474_Trastuzumab_2h_R1 3 VISDSESDIGGSDVEFKPDTK 21 1 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1 P52701 MSH6 DNA mismatch repair protein Msh6 1 VIS(0.987)DS(0.013)ESDIGGSDVEFKPDTK;VIS(0.966)DS(0.034)ESDIGGSDVEFKPDTK;VIS(0.912)DS(0.087)ESDIGGSDVEFKPDTK 259.44 9.0106e-37 560230000.0 835330.0 806790.0 722780.0 650900.0 680380.0 952120.0 1195260.0 1000310.0 1157110.0 1064190.0 True False 830832.6760938886 833643.5174351456 824541.1414836175 733303.8732617194 767022.3600717922 886302.1854494002 1137440.7074633895 1074958.2116712583 871955.7449796259 996272.4831011037 0.833941206032059 0.8367625640329421 0.8276261318761541 0.7360475027666725 0.7698921460565454 0.8896182525192322 1.1416964000881271 1.0789801283331937 0.875218135369436 1.0 19.92618085152483 2.4369481298013596 5.523485371774066 1.038985441383504 0.8029592536086726 0.6911602280351788 0.06998089012489576 0.10168937960145498 7.712984415794964 0.025408143335161514 0.021408427324007332 273.4942057500813 -2.4369481298013596 -0.23602618777483142 VIS(ph)HDRDSPPPPPPPPPPPQPQPSLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VISHDRDSPPPPPPPPPPPQPQPSLK 26 1 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLK;VIS(0.553)HDRDS(0.447)PPPPPPPPPPPQPQPSLK;VIS(0.626)HDRDS(0.374)PPPPPPPPPPPQPQPSLK 148.1 1.0766e-07 3253860000.0 773630.0 706850.0 726270.0 645010.0 666250.0 869790.0 813760.0 766540.0 932990.0 814000.0 True False 769464.8620383731 730377.0749501522 828522.503147995 726668.1998656355 751092.9883268641 809663.4645654252 774395.319934917 823743.1072112503 703067.115925488 762049.8230995387 1.0097303860116058 0.9584374312685203 1.087228784829432 0.9535704593565903 0.985621891849395 1.0624810084886893 1.0162003801604003 1.0809570217611 0.9225999332508913 1.0 19.539525799174857 2.780392902531332 24.998548139817164 1.0263005057236212 0.9990557523376653 0.010129282480157542 0.05256573386750331 1552.7870343300362 927926.832167386 0.01551390044003478 0.016454973090592205 603.1049632790052 -2.780392902531332 -0.02724475338595589 VISDS(ph)ESDIGGS(ph)DVEFKPDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VISDSESDIGGSDVEFKPDTK 21 1 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1 P52701 MSH6 DNA mismatch repair protein Msh6 2 VIS(0.302)DS(0.697)ES(0.002)DIGGS(0.999)DVEFKPDTK 206.48 2.3816e-22 172140000.0 375370.0 307900.0 250050.0 230780.0 239190.0 372150.0 392890.0 351750.0 445270.0 374320.0 True False 373349.0496275273 318148.2653705193 285254.8665264381 259996.72433759365 269649.4287097972 346424.14644687 373884.4097144486 377999.37115030806 335539.17481231515 350430.5771285246 1.065400892487179 0.907878153720115 0.8140124896173585 0.7419350402240634 0.769480308822766 0.9885671201569114 1.0669286133022633 1.0786712000068197 0.9575054139446632 1.0 18.418769138494195 2.5597103044339464 5.488811355203049 1.0375434233344594 0.8540149837791394 0.44297983456303025 0.08910325670229367 0.20570376006086782 10.346183361989725 0.03165108904542435 0.029522283178706085 362.83594478715986 -2.5597103044339464 -0.18352843955531994 VISDS(ph)ESDIGGSDVEFKPDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VISDSESDIGGSDVEFKPDTK 21 1 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1 P52701 MSH6 DNA mismatch repair protein Msh6 1 VIS(0.025)DS(0.973)ES(0.002)DIGGSDVEFKPDTK 217.89 3.4150000000000004e-25 272190000.0 341330.0 323500.0 285170.0 251480.0 235650.0 381770.0 508020.0 388420.0 443040.0 443510.0 True False 339492.3172053278 334267.5019401204 325319.4572579252 283317.34221517475 265658.6306930214 355379.1384899143 483445.13177513855 417405.872756795 333858.7284318459 415204.81209198554 0.8176502471029063 0.8050665411509391 0.7835156235758006 0.6823556326038146 0.6398255101007035 0.8559128606900218 1.1643533930623975 1.0053011444008069 0.8040820306241585 1.0 18.66346363860711 2.471834116156556 24.7420955326312 1.0023066430162082 0.7475958331906795 0.5994038934490347 0.09536136253043478 86.32608564097731 403972.55403022387 0.0341841263924254 0.028691000648991355 296.3699153839188 -2.471834116156556 -0.25471080982552874 VISELNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VISELNGK 8 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 ; 87.616 0.035356 297900000.0 444460.0 430190.0 388400.0 431000.0 393520.0 430580.0 452260.0 355050.0 608620.0 465500.0 False True 442067.0767441478 444508.6140946531 443083.3439666804 485564.5558085741 443632.4394242208 400815.01807629527 430382.4559990242 381545.63390736876 458633.75609017233 435791.39146539965 1.014400663715833 1.0200032006138093 1.0167326676113557 1.114213280294056 1.01799266372026 0.9197405591893584 0.9875882461831399 0.8755235678804412 1.0524158234240528 1.0 18.733278172467404 2.907201204068006 5.904937281300188 0.9547589910814464 1.041294190253782 0.30096107633100744 0.052252795873051365 0.23968287124057405 12.358513013883934 0.015729379973149948 0.01679794385223235 807.6091003971007 -2.907201204068006 0.08653519917233565 VISGTTLGYLS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 VISGTTLGYLSPK 13 0 E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;H0YBY0;E5RJN7;E5RJ67 E7EPX0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 VISGTTLGYLS(1)PK;VISGTTLGYLS(1)PK 273.99 3.8961999999999995e-32 704400000.0 870610.0 745870.0 721760.0 701640.0 610570.0 859320.0 763000.0 695920.0 1046780.0 786380.0 True False 865922.732493864 770695.8320620632 823377.5343496168 790467.5520592302 688322.4703680793 799917.2310216974 726090.7750569467 747853.0842101559 788815.0951333685 736192.5551462108 1.1762177251600816 1.0468671907569072 1.1184268688863483 1.0737239143938913 0.9349761357358138 1.086559793942538 0.9862783452255125 1.015838966290048 1.0714793155938755 1.0 19.4897236347701 7.999999999990629 0.4971902953847126 1.0172570123884102 5.617280592520117 0.4481015377694195 0.049239632995182886 95.46377786215486 1.0213556205144936 0.02502344446352273 457.9679687256228 99999999.99784221 -7.999999999990629 4.600023580131706 VISHDRDS(ph)PPPPPPPPPPPQPQPSLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VISHDRDSPPPPPPPPPPPQPQPSLK 26 1 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 VIS(0.132)HDRDS(0.868)PPPPPPPPPPPQPQPSLK;VISHDRDS(1)PPPPPPPPPPPQPQPSLK 185.7 8.4441e-18 3096700000.0 1153150.0 1110570.0 1077530.0 1082120.0 1022960.0 1297640.0 1276080.0 1166440.0 1441890.0 1361110.0 True False 1146941.5685270084 1147534.6510962592 1229236.8579413425 1219116.2810477354 1153227.892441048 1207937.2011159929 1214351.1353010088 1253485.6758623037 1086555.5298361199 1274242.794495101 0.9000965698860132 0.9005620091035728 0.9646802503037959 0.9567378260363569 0.9050299498832926 0.9479647099708491 0.952998235930521 0.983710232678991 0.8527068267760153 1.0 20.281208764532874 1.4891552030242166 0.008074560014615756 1.89721467710059 1.815876777603263e-05 0.15382411844800337 0.0395619985447996 2726.1909640517097 22.285387410190882 2619.9925927195754 2613.457961304939 30.84289980388261 -1.4891552030242166 -1.8971965183328139 VISRPPPSVS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 4 VISRPPPSVSPPK 13 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 VISRPPPS(0.022)VS(0.978)PPK;VISRPPPS(0.051)VS(0.948)PPK;VISRPPPS(0.038)VS(0.962)PPK;VISRPPPS(0.025)VS(0.975)PPK 94.639 0.003066 1915690000.0 2578420.0 2165620.0 1918360.0 1780620.0 1782500.0 2654070.0 2559240.0 2174470.0 3655850.0 2522110.0 True False 2564538.073209394 2237701.3525550626 2188448.413315968 2006046.3094289205 2009490.8092947574 2470600.387908756 2435439.783953793 2336739.9931349284 2754914.753380202 2361146.7805129946 1.086140893219781 0.9477180203379344 0.9268582670834614 0.8496067783609271 0.8510656033244004 1.0463561216520307 1.031464796705547 0.9896631638577067 1.166769798522079 1.0 21.17105629870778 2.7113891718507013 23.936449181152383 1.0402287349799249 0.9282417618365867 0.3602079124855223 0.07599685541593597 517.8207730654663 456168.70713759365 0.025377889985971794 0.023933788261380876 514.50449321747 -2.7113891718507013 -0.11198697314333816 VITLWYRPPELLLGEER ddPTM_BT-474_Trastuzumab_2h_R1 2 VITLWYRPPELLLGEER 17 1 Q9NYV4-3;J3QSD7;Q9NYV4;Q9NYV4-2;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;Q9BVE2;A0A087X209;A0A2R8Y644;A0A2R8YEB7 Q9NYV4-3;Q9NYV4;Q9NYV4-2;A0A2R8Y4Z0 CDK12;CDK13 Cyclin-dependent kinase 12;Cyclin-dependent kinase 13 0 ; 174.52 1.2245e-09 1180590000.0 278430.0 381450.0 349660.0 375900.0 384440.0 392870.0 329820.0 374770.0 462040.0 367710.0 False True 276930.96381648106 394146.332658606 398889.0887007972 423488.9014581047 433396.1552455975 365711.8216165037 313865.3465652456 402737.2404434999 348176.4330188022 344242.4329876307 0.8044649272695319 1.1449673105022715 1.1587446824579293 1.2302054043213246 1.2589852781489324 1.0623670604537134 0.9117567054161605 1.1699232919898954 1.0114279927579783 1.0 18.393065416346204 2.4970371396867885 24.521410639332977 1.0396333922837955 1.132368629642762 0.09997704437645183 0.13025871428595143 1466.8511635735356 1806058.4807743812 0.043325493320978674 0.040320558022015944 314.0777273150216 -2.4970371396867885 0.0927352373589665 VIVAEFDSFVLVTAYVPNAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VIVAEFDSFVLVTAYVPNAGR 21 0 P27695;G3V3M6;G3V5M0;G3V359 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 152.99 1.7711e-12 0.0 14302.0 16381.0 17633.0 10274.0 12178.0 16454.0 15151.0 13832.0 15838.0 14864.0 False True 14224.999621101573 16926.23168247639 20115.57313121647 11574.68734658305 13728.7961153389 15316.573708549773 14418.088247559384 14864.214077472818 11934.937118326969 13915.366794289364 1.0222511437455803 1.2163697826077164 1.4455654262359487 0.831791753511888 0.9865924713513818 1.1006949320829575 1.0361270716540745 1.068187012042891 0.8576803827567714 1.0 13.764391316629176 3.7304849722647413 24.993127629055788 0.9982756370176319 1.2268928882577337 0.4465935733071247 0.12419345161029048 568.5066502680021 1759459.2632466715 0.033140357027780266 0.05235248008661233 5376.318293201797 -3.7304849722647413 0.2286172512401018 VIY(ph)DFIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VIYDFIEK 8 0 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 VIY(1)DFIEK 96.711 0.090151 35186000.0 29672.0 20440.0 26898.0 25523.0 22839.0 25417.0 24706.0 26146.0 31233.0 29941.0 True False 29512.24924886913 21120.333043759067 30685.004598392836 28754.20918306786 25747.411272641257 23659.982615182307 23510.87639391473 28097.147286697826 23536.045650758064 28030.139746220244 1.0528755659467857 0.7534865410939331 1.0947146491672626 1.0258318168729519 0.9185616449205608 0.8440907833280697 0.8387712871494006 1.0023905532075208 0.8396692226242578 1.0 14.774691316594717 3.048072379755484 12.701229590774838 0.905079749802408 0.9733659121602588 0.11347978872980258 0.10149935320680695 2.6334193291832775 691.2511887545138 0.029013539313724534 0.03467797629639168 1117.0494003309684 -3.048072379755484 0.06828616235785079 VKADRDESSPYAAMLAAQDVAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKADRDESSPYAAMLAAQDVAQR 23 2 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ; 137.64 3.775e-06 952910000.0 491370.0 601100.0 649390.0 668480.0 633610.0 762490.0 786220.0 681530.0 1013840.0 782530.0 False True 488724.5185163395 621107.2501273766 740818.4674009338 753109.4994592009 714296.4777992998 709780.8610083947 748187.5349479344 732389.2293392167 763992.7167599825 732588.2654423612 0.6671203206090549 0.8478258244449648 1.0112344168570635 1.0280119611313296 0.9750312849578388 0.9688673631426589 1.0212933652385954 0.9997283110956953 1.0428678055587721 1.0 19.482643066660327 4.549884406222684 2.218126527664898 1.0056626625977778 0.6414533269825232 0.9549995436754382 0.023196777740684175 0.08041775351713744 0.6044340257326724 0.0061899723644020035 0.04901735310415139 35471.89630692288 -4.549884406222684 -0.3642093356152546 VKAEAEAAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKAEAEAAR 9 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 103.08 0.0031737 388970000.0 325430.0 381520.0 412800.0 275540.0 170835.0 265830.0 391680.0 235100.0 690830.0 347660.0 False True 323677.92103867175 394218.66256629 470918.65187807806 310423.33574824705 192589.8246316241 247453.79779651086 372732.94203709695 252644.3558136104 520584.2031477348 325472.041153299 0.9944876367620707 1.211221280849162 1.446878970646431 0.9537634466182491 0.5917246346235722 0.7602920266812069 1.1452072525687018 0.7762398113164308 1.5994744166136747 1.0 18.31217409210754 3.615308940293161 10.1388528529197 0.9411222951781373 1.2166064751916357 0.13125109552795367 0.27621025953876666 0.6906079695862658 53.804395840767775 0.07284101202129353 0.11288024415177365 4123.907736224659 -3.615308940293161 0.2754841800134984 VKAPVHFVEPLS(ph)PTGVAGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKAPVHFVEPLSPTGVAGHR 20 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 VKAPVHFVEPLS(0.999)PT(0.001)GVAGHR;VKAPVHFVEPLS(1)PTGVAGHR 224.99 3.2658000000000003e-25 1826850000.0 1235610.0 1521540.0 1496730.0 1418320.0 1517570.0 1646620.0 1544910.0 1150500.0 1710250.0 1464250.0 True False 1228957.6130491775 1572183.5391096468 1707456.5741896213 1597879.166576375 1710823.5441578964 1532793.0351265504 1470176.801170679 1236356.1521206244 1288781.8036758867 1370800.3113925057 0.8965256301997484 1.1469092369205616 1.2455910317492769 1.165654219142389 1.24804723922187 1.1181738305628826 1.0724952343184277 0.9019228707824641 0.9401674284467431 1.0 20.386586994018128 1.9663249935176785 2.9692301440398796 0.9395794835918655 1.1481442929460244 0.43944462167184184 0.09467418241692785 0.2290632746175324 3.796323769951754 0.04854848000729622 0.027375567836201493 92.53904078868679 -1.9663249935176785 0.2085648093541589 VKAQT(ph)PPGPS(ph)LSGSKSPCPQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKAQTPPGPSLSGSKSPCPQEK 22 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 VKAQT(1)PPGPS(0.659)LS(0.081)GS(0.067)KS(0.193)PCPQEK 78.45 0.016413 3093300000.0 708380.0 440330.0 444360.0 411780.0 394220.0 686330.0 716010.0 644940.0 1174000.0 686960.0 True False 704566.1607884166 454986.11786489375 506922.0255536413 463911.30577924545 444421.5802749961 638885.622547038 681373.8608761788 693068.6977389621 884683.4307940305 643117.6246639551 1.0955478963223406 0.7074695209956893 0.788225988703887 0.7213475233580336 0.6910424520043552 0.9934195519534574 1.059485597572005 1.0776701977357683 1.3756168340998267 1.0 19.29472310156995 2.388218630827382 2.101742560094097 1.140150802946433 0.7915873753493508 0.5389520183836116 0.1423206906039472 0.23738660073688053 2.1460587227294807 0.05936213005385216 0.04532058498090331 244.4660924602852 -2.388218630827382 -0.34856342759708214 VKAQT(ph)PPGPSLSGS(ph)KSPCPQEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKAQTPPGPSLSGSKSPCPQEK 22 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 VKAQT(1)PPGPS(0.001)LS(0.02)GS(0.596)KS(0.383)PCPQEK 85.0 0.0035379 423070000.0 429090.0 291550.0 288690.0 267640.0 298810.0 490020.0 494150.0 479420.0 823070.0 504610.0 True False 426779.827116381 301254.0655043031 329335.042661537 301523.19655825285 336861.68231437117 456146.070783005 470246.07666368387 515196.75484543195 620235.4270729491 472405.35778164386 0.9034186850049403 0.6377024742457501 0.6971450201328219 0.6382721778901236 0.7130776075365259 0.9655819166086718 0.9954291773317312 1.0905819469633686 1.3129305518157048 1.0 18.84966580157911 2.4089868390322806 1.4503924280103215 1.1346927299272003 0.7032192817245866 0.7477253414677592 0.10576724612280529 0.19205649280036227 0.8151640104630983 0.053507878310707274 0.037570531551195094 256.4406322934809 -2.4089868390322806 -0.4314734482026137 VKAQT(ph)PPGPSLSGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKAQTPPGPSLSGSK 15 1 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VKAQT(0.998)PPGPS(0.002)LSGSK;VKAQT(0.99)PPGPS(0.01)LSGSK 101.23 0.0029951 5363600000.0 2217700.0 1775470.0 1748750.0 1521610.0 1552790.0 2193660.0 2409180.0 2069640.0 3048500.0 2228310.0 True False 2205760.1496096333 1834565.4456557191 1994958.799592514 1714245.6699858124 1750528.6023925983 2042017.447520194 2292638.759438662 2224087.046218973 2297238.0228071567 2086097.3480478262 1.0573620409775162 0.8794246574219122 0.9563114595104587 0.8217476866983253 0.8391404188451446 0.9788696819115934 1.099008520184409 1.0661472957147844 1.1012132415378009 1.0 20.99237505233472 2.4389952678424103 4.487746456086282 1.0711924543568083 0.9063890857265081 0.5451980346134783 0.06683777191087013 0.14549345194146707 6.683568796665917 0.023447965385622396 0.019838556461706496 274.786421167355 -2.4389952678424103 -0.1648033686303002 VKAQT(ph)PPGPSLSGSKS(ph)PCPQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKAQTPPGPSLSGSKSPCPQEK 22 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 VKAQT(1)PPGPS(0.151)LS(0.131)GS(0.311)KS(0.407)PCPQEK;VKAQT(0.975)PPGPS(0.047)LS(0.089)GS(0.255)KS(0.634)PCPQEK 77.43 0.018532 935840000.0 1267250.0 782300.0 816740.0 769870.0 826220.0 1362120.0 1310710.0 1293760.0 2272320.0 1310250.0 True False 1260427.266804711 808338.3825896644 931729.8927686573 867335.4630634503 931434.2196103871 1267959.8504855856 1247305.9499015613 1390306.9407801651 1712337.1835280175 1226628.723238537 1.0275540128205536 0.6589918915770167 0.7595859082026958 0.7070888253566384 0.7593448628458827 1.033694895989331 1.0168569562014105 1.1334374570240666 1.3959702321392866 1.0 20.226267208546524 2.380456458914319 1.4023419594392819 1.1793628686767674 0.7674772120381598 0.60948715831761 0.13530727895717032 0.2631615819763498 1.0389782018543483 0.07056881302795522 0.04769670019078924 240.13555029863997 -2.380456458914319 -0.41188565663860766 VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFS(ph)PGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKASPITNDGEDEFVPSDGLDKDEYTFSPGK 31 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 VKAS(1)PITNDGEDEFVPSDGLDKDEYT(0.453)FS(0.547)PGK 283.6 2.4092999999999996e-72 442940000.0 239030.0 173420.0 170580.0 142770.0 149330.0 278860.0 266310.0 256210.0 473370.0 246690.0 True False 237743.08903872932 179192.17986539644 194596.18129206073 160844.6673614622 168346.2903517456 259583.06456583133 253427.56789700635 275329.6912080184 356714.3063330239 230946.03299806532 1.0294313608786732 0.7759049919116713 0.8426045633513476 0.6964599706408883 0.7289421176295151 1.1239988026467027 1.0973454040629889 1.1921819467248649 1.5445786260204442 1.0 17.817196239401973 2.5916910316306216 3.334745552866652 1.2106127347161004 0.8078562514659174 0.5963134431525482 0.15559524328211838 0.17461206705322826 3.633014589913135 0.0534887441273439 0.049340096009843716 390.56294031639914 -2.5916910316306216 -0.402756483250183 VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKASPITNDGEDEFVPSDGLDKDEYTFSPGK 31 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 VKAS(0.767)PIT(0.233)NDGEDEFVPSDGLDKDEYTFSPGK;VKAS(0.939)PIT(0.061)NDGEDEFVPSDGLDKDEYTFSPGK 102.78 9.1435e-05 7750300000.0 200127.0 178879.0 158498.0 143535.0 134028.0 224160.0 228574.0 228027.0 370990.0 201110.0 True False 199049.53846820016 184832.8793803612 180813.14071068732 161706.51628302486 151095.67135380534 208664.34681588184 217517.00238252536 245043.53263764424 279564.4855113093 188274.98762106674 1.0572277336637987 0.9817176552010545 0.9603672957058026 0.8588847532338435 0.8025265239050731 1.1082956342339638 1.1553154517811617 1.3015193134992162 1.4848732114856231 1.0 17.522481824724014 2.285087843507758 2.0989490239661133 1.2817196732767298 0.9347530093395843 0.5347535697611355 0.13216405361788788 0.22415269815367242 2.0160498212497107 0.05920382307611576 0.041185924916927824 192.79148275966432 -2.285087843507758 -0.3469666639371455 VKDDIESLHDK ddPTM_BT-474_Trastuzumab_2h_R1 6 VKDDIESLHDK 11 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;;;;; 167.98 1.1175e-05 3465090000.0 5121010.0 4213660.0 3901860.0 3510880.0 3522360.0 5428500.0 5308870.0 5158830.0 7764980.0 5138420.0 False True 5093439.051157701 4353909.125888741 4451207.972424905 3955357.048021366 3970911.6673365976 5053240.5723144775 5052059.676247157 5543808.090607949 5851404.724401223 4810481.636377315 1.0588210154760045 0.905087983906657 0.9253144090114493 0.8222372200967536 0.8254707049099179 1.0504645801163435 1.050219096159313 1.1524434577787699 1.216386459133811 1.0 22.197749916464335 2.433126520906077 2.430744170917283 1.1236313045894335 0.9047614547926355 0.5543309209285958 0.083175995169829 0.2057538558939493 2.480131577814588 0.03303591275012251 0.02689517022050917 271.0981293899343 -2.433126520906077 -0.21886984979679802 VKDEPQR ddPTM_BT-474_Trastuzumab_2h_R1 7 VKDEPQR 7 1 P05204;O00479 P05204 HMGN2;HMGN4 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 4 0 ;;;;;; 138.54 0.0025311 10148058000.0 3885413.0 4232623.0 4310489.0 3696913.0 3560612.0 4500207.0 4597292.0 4360629.0 5418252.0 4250072.0 False True 3864494.368117962 4373503.29788037 4917368.383757956 4164941.8067469685 4014034.832799237 4189118.2824378125 4374903.422599094 4686041.278805399 4082996.395457085 3978828.7662902987 0.9712643079438331 1.0991936458622849 1.2358833899611907 1.0467758356513026 1.0088483492446858 1.0528521151573909 1.0995455395478302 1.1777438925009274 1.0261804755332329 1.0 21.92391238156529 1.0162084023474809 24.84053837913075 0.9999999201716595 1.092345102330762 0.1403521974104356 0.07298182162074401 322.05389976796965 493568.87600269023 0.07273620945428629 0.018184052369028956 10.380264079723307 -1.0162084023474809 0.09234518215910248 VKDEPQRR ddPTM_BT-474_Trastuzumab_2h_R1 10 VKDEPQRR 8 2 P05204;O00479 P05204 HMGN2;HMGN4 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 4 0 ;;;;;;;;; 135.79 0.00046045 21551220000.0 8437500.0 10632500.0 10754260.0 9907050.0 9377120.0 11039180.0 11757910.0 10756730.0 15019680.0 11141050.0 False True 8392073.437494382 10986396.335018022 12268366.330296392 11161281.514207276 10571240.64945531 10276067.47003456 11189134.97372192 11559451.814168165 11318281.117400749 10430018.650667222 0.8046077115075465 1.05334388201839 1.1762554546833497 1.0701113668184354 1.0135399564965355 0.9852396063910381 1.072781875898768 1.1082867827306033 1.0851640343592965 1.0 23.314238401858386 4.734284459162279 5.520262320683169 1.068849651870374 0.7957002894428221 0.6796993451787224 0.05310362741010028 0.08241670902440033 9.875203794091325 0.013414540611482067 0.08504764790633385 54235.60126263721 -4.734284459162279 -0.27314936242755194 VKDGPGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKDGPGGK 8 1 H0YF61;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 H0YF61 SCP2 Non-specific lipid-transfer protein 0 ; 83.647 0.016428 1993040000.0 4308200.0 3970400.0 3427300.0 3329600.0 3642200.0 3046600.0 4794700.0 4756300.0 6900900.0 5209300.0 False True 4285005.129886016 4102552.363842517 3909834.0493743643 3751127.018608418 4106012.580989272 2835995.712924988 4562762.043467298 5111239.258002017 5200265.662322427 4876838.014093894 0.8786441373493439 0.8412320343604365 0.8017149714784618 0.7691719527627923 0.8419415549835851 0.5815234594073164 0.9355984410966847 1.0480641848736234 1.066319128766188 1.0 22.217514622865774 2.0076533222807598 24.99667014516178 1.0305590304092185 0.7880777583739025 0.6872982407135558 0.07723736501030636 99.83940067451968 326085.92403125635 0.02895710601495839 0.021346673566511744 101.77786168806739 -2.0076533222807598 -0.242481272035316 VKDLESLFHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKDLESLFHR 10 1 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 196.76 1.9675e-07 523490000.0 979640.0 1488260.0 1557800.0 1423260.0 1505790.0 1732460.0 1620660.0 1471270.0 2501830.0 1815660.0 False True 974365.7270882371 1537795.834427833 1777124.699359668 1603444.5700698637 1697543.4309834247 1612699.117972173 1542262.4842775785 1581063.6383576822 1885287.5193044534 1699783.0243352673 0.5732294729024497 0.9047012544611202 1.045500910361572 0.9433230871904498 0.9986824239801322 0.948767633800114 0.9073290309395282 0.9301561527101304 1.1091342202583363 1.0 20.69691916880855 4.719231546769146 3.3968363784749283 0.974436734241868 0.5297768679038305 0.8209119942177144 0.057348723974122544 0.11123160061952708 2.1963346016633425 0.013791107692793061 0.12482937656238755 52387.96718042526 -4.719231546769146 -0.44465986633803756 VKDS(ph)SPGEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKDSSPGEK 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 VKDS(0.593)S(0.407)PGEK 62.042 0.051607000000000014 309850000.0 1060400.0 783830.0 615700.0 586140.0 574150.0 693180.0 922830.0 863380.0 1466100.0 985150.0 True False 1054690.924221515 809919.307714759 702385.2082396635 660345.2639017125 647264.5992463324 645262.0981702041 878189.1873470559 927809.7997548061 1104799.2997334998 922276.8835706518 1.1435729800992236 0.8781737048196486 0.7615773752458544 0.7159945951861497 0.7018115825915615 0.6996403245758824 0.9521968976898698 1.005999192089401 1.1979041429035944 1.0 19.81484041227806 1.8193591818366721 2.3283959457000027 1.0887357215795432 0.8092750955279407 0.40963678451409424 0.13410518815121952 0.283148168815024 2.918174444253524 0.08584963320320488 0.040062842321391026 65.97192883690349 -1.8193591818366721 -0.2794606260516025 VKDSS(ph)PGEK ddPTM_BT-474_Trastuzumab_2h_R1 6 VKDSSPGEK 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 VKDS(0.124)S(0.876)PGEK;VKDS(0.127)S(0.873)PGEK;VKDS(0.171)S(0.829)PGEK;VKDS(0.2)S(0.8)PGEK;VKDS(0.241)S(0.759)PGEK;VKDS(0.442)S(0.558)PGEK 126.83 0.00088045 4298120000.0 12714940.0 8477090.0 7421640.0 6623750.0 6961080.0 7475640.0 10974870.0 10588520.0 18763750.0 11566130.0 True False 12646484.175802646 8759244.81614088 8466542.4019487 7462316.070851619 7847532.276446311 6958866.602563697 10443973.610025214 11378689.129815111 14139675.233868396 10827969.681137927 1.1679460275763913 0.8089461897366856 0.7819141216009518 0.6891703884109319 0.7247464213089302 0.6426751096916979 0.9645366506906992 1.0508608229330865 1.3058473241294148 1.0 23.368259417263715 1.816031664193253 2.457467817357639 1.1466651150844132 0.795064539621414 0.4531477468904588 0.15426539100763417 0.23837443228545596 2.727547020323414 0.09265259566740722 0.04382321849404452 65.46839050029914 -1.816031664193253 -0.35160057546299917 VKDWVER ddPTM_BT-474_Trastuzumab_2h_R1 4 VKDWVER 7 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;;; 98.582 0.010175 2175630000.0 3579430.0 3559760.0 3189960.0 3111010.0 3286350.0 4065360.0 3989510.0 3668110.0 4369150.0 3945270.0 False True 3560158.7465920555 3678244.459679637 3639078.640370625 3504863.5470209587 3704847.192777463 3784331.2320280736 3796522.159891795 3941842.994485163 3292431.526110509 3693479.490884419 0.9639037540017749 0.9958751547849711 0.9852711107106303 0.9489327220229683 1.0030777758265883 1.024597873459939 1.0278985355845855 1.0672437749319335 0.8914173029080832 1.0 21.81654913601521 3.0278849793493383 14.819826085397446 1.0135554466961487 0.9759405246765822 0.06363658596399746 0.04435124270951848 5.200201679159392 2760.079974849086 0.01275623177180267 0.015236964374017899 1066.313676159589 -3.0278849793493383 -0.03761492201956651 VKEDPDGEHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKEDPDGEHAR 11 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ; 161.48 1.5776e-05 12846500000.0 26023000.0 25375000.0 23355000.0 21840000.0 21364500.0 26351000.0 26741000.0 25526000.0 34538000.0 26177000.0 False True 25882895.059427112 26219591.53548855 26643180.99470088 24604941.76069434 24085142.43768744 24529417.393581815 25447435.669459783 27430879.738401648 26026572.685489107 24506361.448742796 1.0561704606195195 1.0699096065455953 1.0871944841924994 1.004022641719283 0.9828118502236095 1.0009408146895753 1.0384012217678795 1.1193371074598626 1.062033331219976 1.0 24.546652961981014 -1.7525981248982705 7.962895197931276 0.9994752098754507 1.0489802376107038 0.10796820236692373 0.0398618633144891 0.00042996958155834964 1.3358885075346377e-05 0.04468535449270233 0.010421720570517115 0.01767672782982686 1.7525981248982705 0.049505027735253115 VKEDPDGEHARR ddPTM_BT-474_Trastuzumab_2h_R1 1 VKEDPDGEHARR 12 2 A0A087X0X3;P52272-2;P52272;M0R2T0;M0R019;M0R0N3;M0QYQ7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 72.29 0.025398 37699000.0 18778.0 26713.0 25472.0 28654.0 26325.0 28979.0 31001.0 23912.0 41732.0 31340.0 False True 18676.90133443193 27602.1260566505 29058.236193407032 32281.59346203918 29677.33270950046 26975.749939228397 29501.36319467946 25696.43486267568 31447.70778015034 29339.854368476073 0.6365710306489847 0.9407724288607016 0.9904015142157071 1.1002642704567693 1.011502386371317 0.919423443635502 1.005504758959435 0.8758201230298187 1.0718426678333832 1.0 14.840574089606465 4.743453437579416 3.188574131214735 0.9879146850696456 0.5830465506518152 0.7516847166671157 0.06161962589720971 0.18086556889356328 2.8612214027557648 0.015757480890890234 0.18355681652409592 55392.81519376555 -4.743453437579416 -0.4048681344178304 VKEEEVHR ddPTM_BT-474_Trastuzumab_2h_R1 3 VKEEEVHR 8 1 Q14789;Q14789-2;Q14789-4;Q14789-3 Q14789 GOLGB1 Golgin subfamily B member 1 0 ;; 142.92 0.00036634 572884000.0 855100.0 951370.0 913660.0 773920.0 884780.0 1061260.0 967240.0 902770.0 1242500.0 964570.0 False True 850496.2366105422 983035.7753346907 1042295.3863249158 871898.1926481952 997451.4884980735 987897.5941373246 920450.9059843791 970139.2815731743 936302.5236470032 903010.3167900753 0.9418455368636268 1.0886207577661808 1.1542452693452676 0.9655462140759652 1.1045848202971895 1.0940047702323021 1.0193138316030539 1.0743390895263765 1.036868024913903 1.0 19.784382944863715 0.9599342629619395 5.710563555463004 1.000009534945012 1.0585118772194317 0.06883121058460917 0.061234458822527774 0.6259194028826525 72.81991392183522 0.05519054534630331 0.013896126696530453 9.118728031694122 -0.9599342629619395 0.05850234227441975 VKEEIIEAFVQELR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKEEIIEAFVQELR 14 1 P50552 P50552 VASP Vasodilator-stimulated phosphoprotein 0 ; 147.64 7.2758000000000016e-06 1203740000.0 1066590.0 1061910.0 1002180.0 947900.0 973630.0 1206250.0 1258260.0 1191430.0 1444490.0 1161550.0 False True 1060847.5979492886 1097255.0324118491 1143278.2328952819 1067904.0428096238 1097616.009342865 1122864.7767070725 1197393.1567800182 1280340.556558952 1088514.7946743353 1087418.8845470129 0.9755648104191301 1.0090454083560758 1.0513687495610657 0.9820539793682924 1.009377365926563 1.0325963551523436 1.1011333109952541 1.1774124716367278 1.0010078086217704 1.0 20.05247635720383 2.36294733927487 3.8837921550417396 1.0950345764012381 1.0079869643265513 0.18882356493054686 0.05325610760985724 0.24811375429934027 7.016075227533111 0.019410391724819596 0.01587495561568445 230.64674992000877 -2.36294733927487 -0.08704761207468681 VKEEPPS(ph)PPQS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 VKEEPPSPPQSPR 13 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR 92.133 0.0035352 3590610000.0 3303800.0 2878140.0 2650250.0 2699720.0 2762920.0 3342100.0 3326300.0 3195200.0 3858500.0 3331200.0 True False 3286012.707886686 2973937.150027633 3023382.1636140477 3041504.275191469 3114761.4848901425 3111068.4934571707 3165394.161300033 3433642.048896844 2907624.376251077 3118599.964016191 1.0536820194324947 0.9536128982050462 0.9694677735199098 0.97527875017178 0.9987691659172901 0.9975849834393888 1.0150048732840935 1.1010203580182614 0.9323492624256251 1.0 21.572467073320663 2.2284192475293976 3.718111785420936 1.029875035834429 0.9876485200672503 0.0 0.04660713512099629 0.4397068718136177 13.16116685535908 0.01786743893672476 0.013430789800732939 169.20735919764502 -2.2284192475293976 -0.04222651576717873 VKEEPPS(ph)PPQSPR ddPTM_BT-474_Trastuzumab_2h_R1 5 VKEEPPSPPQSPR 13 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 VKEEPPS(0.997)PPQS(0.003)PR;VKEEPPS(0.995)PPQS(0.005)PR;VKEEPPS(1)PPQSPR;VKEEPPS(1)PPQSPR;VKEEPPS(1)PPQSPR 146.88 2.5743e-05 4889590000.0 4932140.0 4535770.0 4095100.0 3943350.0 3916260.0 5458390.0 5605220.0 5207770.0 6719130.0 5555880.0 True False 4905585.906252272 4686740.362519133 4671654.484752709 4442577.705679218 4414972.49750839 5081064.346967971 5334074.094580221 5596400.241920235 5063290.443229209 5201298.981771822 0.9431463031531375 0.9010711322198585 0.8981707264136757 0.8541285016009317 0.848821133524693 0.9768837293865977 1.025527298713978 1.0759620359323818 0.9734665246073586 1.0 22.310440538833394 2.51865638374697 3.6906371081860962 1.0291778627377226 0.8887176224866854 0.7521632788498767 0.03516654214915325 0.10996871153512526 3.108985747200774 0.012887473584961957 0.011525559325966713 330.1082541648718 -2.51865638374697 -0.1404602402510372 VKEFLHNQGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKEFLHNQGK 10 1 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 ; 149.96 1.3472e-05 2560300000.0 4003400.0 3716600.0 3694100.0 3431700.0 3230700.0 4263800.0 4493500.0 4137300.0 6191400.0 4631900.0 False True 3981846.139219556 3840304.784267856 4214197.1703071995 3866152.868139872 3642110.4951408617 3969053.5419055885 4276132.238163029 4446046.334783709 4665612.430509511 4336288.176430896 0.9182614201846997 0.8856202881397811 0.9718443514000523 0.8915811659274956 0.8399143108008572 0.9153112939953243 0.9861273199980496 1.025311546162772 1.0759461181266958 1.0 22.048029206295638 2.0722296501801107 2.352138458825232 1.0359638696471545 0.9016367674422854 0.7388276386184218 0.03529348207579745 0.15544223911458296 1.6626415459069468 0.018578236800492077 0.010886333598987887 118.09449413648015 -2.0722296501801107 -0.1343271022048691 VKEGMNIVEAMER ddPTM_BT-474_Trastuzumab_2h_R1 27 VKEGMNIVEAMER 13 1 P62937;P62937-2 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed 0 ;;;;;;;;;;;;;;;;;;;;;;;;;; 246.51 2.8140999999999997e-16 134341920000.0 52441000.0 56937230.0 53364860.0 49160200.0 46901720.0 56864450.0 61117330.0 51833460.0 73610960.0 59261780.0 False True 52158663.48274287 58832351.28126765 60878168.432321705 55383876.2794911 52874376.033725746 52933544.41601702 58160851.257026464 55701535.990176655 55470525.24432888 55479642.463837534 0.940140584300641 1.060431334243285 1.0973064304082891 0.9982738500088774 0.9530410378579866 0.9541075260266845 1.0483277950995553 1.0039995485998987 0.9998356654963197 1.0 25.725455154517057 3.5176496011683147 24.827003501610907 0.9944102923855255 1.037470566081254 0.133802964226593 0.04469464344041582 891.8912499056237 546355.9164430071 0.012188256559427067 0.01887897765252246 3293.4388269208207 -3.5176496011683147 0.04306027369572851 VKEHEDKDDASGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VKEHEDKDDASGR 13 2 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 0 152.0 2.7032e-05 35700000.0 51880.0 33974.0 32592.0 33768.0 30348.0 46969.0 44601.0 40119.0 72181.0 40981.0 False True 51600.683844409854 35104.80405228332 37180.67030525761 38043.02533768898 34212.63791331129 43722.14358313325 42443.479237634245 43112.88350015416 54392.959725846624 38365.55749440071 1.3449741699163567 0.91500831331349 0.9691158615558753 0.9915931846745926 0.8917539623477251 1.1396196598867177 1.1062912155995306 1.1237392681299183 1.417754967689054 1.0 15.227524098572626 2.132237192041718 1.5652481787145112 1.192201117269735 1.016711539293358 0.14606168822694077 0.15424834992323697 0.6614472330350669 3.109666339765765 0.08953945946958479 0.04877348717006944 135.5929757787275 -2.132237192041718 -0.1754895779763772 VKELEEQLENETLHK ddPTM_BT-474_Trastuzumab_2h_R1 3 VKELEEQLENETLHK 15 1 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-2 A0MZ66 KIAA1598 Shootin-1 0 ;; 197.88 4.9282e-09 347042000.0 463150.0 374413.0 353230.0 326151.0 325469.0 476620.0 455760.0 415960.0 660860.0 451400.0 False True 460656.4518608028 386875.11036756175 402961.7136698005 367441.6831589847 366915.5479440992 443672.38124279794 433713.1476277257 447001.04740208224 497999.90807030967 422591.2655370169 1.0900756580366462 0.9154829782767325 0.9535495561124016 0.8694966345129029 0.868251613004432 1.0498853559573498 1.0263182961828976 1.0577621542509783 1.1784434480382968 1.0 18.688903423213084 2.6262864537834414 6.454580045970412 1.0637875707757687 0.9352228412764152 0.4206318898052015 0.07227207671174213 0.23837630480755542 12.078141107965383 0.02364476168990951 0.02224337713104475 422.9474917717941 -2.6262864537834414 -0.1285647294993535 VKELLVDCYKPTEAFISGLLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKELLVDCYKPTEAFISGLLDK 22 2 B5MC51;P53671-3;F5GXC4;F5H2U0;Q96C90 B5MC51;Q96C90 LIMK2;PPP1R14B LIM domain kinase 2;Protein phosphatase 1 regulatory subunit 14B 0 ; 146.75 4.6768e-08 2195700000.0 1038970.0 906540.0 853840.0 783800.0 741761.0 1039610.0 1142660.0 1046820.0 1724960.0 992150.0 False True 1033376.3009604188 936713.6358849984 974053.2502896758 883028.9996351765 836219.8665881015 967744.2076787058 1087385.1704149037 1124939.0240442515 1299866.7212797871 928830.1375776503 1.1125568165298991 1.0084875565384948 1.048688248671566 0.9506894360018063 0.900293641169878 1.041895787536074 1.1707040140307658 1.211135361066174 1.399466564112341 1.0 19.82505525825574 2.2028261604921657 2.906964256528875 1.2206635298734947 1.0012120627867203 0.432630032668778 0.10418468236823436 0.22098314568829938 3.8273922386888963 0.04252430583722741 0.030065146281769983 159.52404761500867 -2.2028261604921657 -0.21945146708677443 VKELVEFAQDDDRLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKELVEFAQDDDRLR 15 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ; 237.06 5.6309000000000006e-18 270370000.0 201089.0 246314.0 242882.0 257016.0 252803.0 294890.0 292550.0 237100.0 363920.0 299480.0 False True 200006.35916708806 254512.4125900429 277077.6744318105 289554.1992475557 284995.9635692246 274504.9483963928 278398.2388504721 254793.6059694046 274236.79227816354 280366.9300022725 0.7133735749985454 0.9077832845263882 0.9882680330007704 1.0327687336206475 1.0165106261530723 0.9790917509214365 0.9929781620400651 0.9087862322683328 0.9781353038888743 1.0 18.096956664244097 4.704368712962616 2.3704833084492662 0.9824848974760904 0.6613194949918273 0.8749820920489282 0.03126031653942814 0.1936233237578287 1.3927382105580997 0.009249870436093904 0.12389794048398126 50625.428593391436 -4.704368712962616 -0.32116540248426306 VKEPS(ph)VQEATSTSDILK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKEPSVQEATSTSDILK 17 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 VKEPS(0.997)VQEAT(0.003)STSDILK 171.29 1.0558e-09 230820000.0 183740.0 126350.0 110740.0 110550.0 114540.0 195200.0 142930.0 163170.0 296230.0 204440.0 True False 182750.7642554331 130555.48336981206 126331.22943066467 124545.61866505322 129125.99006823094 181706.2834513747 136015.9298543768 175346.57396047155 223228.08577863337 191392.4641701099 0.9548482749718086 0.6821349207029079 0.6600637594507446 0.6507341822735345 0.6746660095951509 0.9493910026147838 0.7106650224926602 0.916162372018071 1.1663368604744435 1.0 17.546174501134093 1.5107391484434292 3.422199255202929 1.0802118481430845 0.7491473520216183 0.5756271134685099 0.11285387136180043 0.1452596733842357 3.5982531796543777 0.07799553731604314 0.0296147515827542 32.41448667952156 -1.5107391484434292 -0.33106449612146616 VKESSIIAPAPAEDVDT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 3 VKESSIIAPAPAEDVDTPPR 20 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR 129.8 2.793e-05 1435070000.0 2747120.0 2817960.0 2587680.0 2468980.0 2578100.0 3687800.0 3531100.0 3135850.0 4188200.0 3666800.0 True False 2732329.8111537225 2911754.095107205 2952002.851482236 2781552.61484978 2906405.7534041037 3432871.066147433 3360287.2028880543 3369863.050523649 3156074.229004735 3432781.684694579 0.7959521059367406 0.8482200042285152 0.8599448268569054 0.8102911487938855 0.846661984466598 1.0000260376164476 0.9788817092185766 0.9816712392601431 0.9193926438947244 1.0 21.710946678170863 2.781674621060207 6.358129993635769 0.9756850884530586 0.8326752305182453 0.8750439840464457 0.02717736360161321 0.06949741758867503 7.655147006085555 0.008206917324163038 0.00862566901589888 604.8875155373806 -2.781674621060207 -0.14300985793481324 VKEVHDELEDLPS(ph)PPPPLS(ph)PPPTTSPHK ddPTM_BT-474_Trastuzumab_2h_R1 4 VKEVHDELEDLPSPPPPLSPPPTTSPHK 28 1 F5H039;Q9NQX3;Q9NQX3-2;H0YJ30;G3V582 F5H039 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 2 VKEVHDELEDLPS(1)PPPPLS(0.914)PPPT(0.031)T(0.029)S(0.026)PHK;VKEVHDELEDLPS(1)PPPPLS(0.881)PPPT(0.041)T(0.038)S(0.041)PHK;VKEVHDELEDLPS(0.994)PPPPLS(0.832)PPPT(0.054)T(0.058)S(0.062)PHK;VKEVHDELEDLPS(1)PPPPLS(0.997)PPPT(0.001)T(0.001)S(0.001)PHK 100.72 0.0017840999999999996 704850000.0 751500.0 649070.0 624815.0 560745.0 617917.0 822390.0 741610.0 697220.0 993940.0 747730.0 True False 747454.0074994989 670673.9025788988 712783.5210106627 631735.2595055206 696605.0672689992 765540.1149978276 705735.4910746827 749250.0968114226 748996.8051136448 700009.2312361406 1.067777357992231 0.9580929402810321 1.0182487447372144 0.9024670408845101 0.995136972749445 1.093614313694073 1.0081802633208568 1.070343166029865 1.06998132551909 1.0 19.417014421881255 2.909837540806905 7.746697198521863 1.050499259295481 0.9822369706904622 0.2848362328951588 0.047475081965204134 0.3340582402038352 25.61027188656252 0.013817451843045652 0.014690021954334503 812.5265125452426 -2.909837540806905 -0.0682622886050187 VKEYQVETIVDTLCTNMLSDKEQLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKEYQVETIVDTLCTNMLSDKEQLR 25 2 Q86VP6;Q86VP6-2 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 ; 211.3 7.8502e-26 423170000.0 606550.0 596360.0 607860.0 595860.0 613710.0 768250.0 795280.0 651270.0 1024960.0 815600.0 False True 603284.4021940405 616209.482092768 693441.4043861653 671295.814905098 691862.3307558411 715142.6857659757 756809.2681353724 699871.0744820507 772372.3417603484 763547.7097297097 0.7901070155885855 0.8070346806631136 0.9081834645691472 0.8791799207186829 0.9061153899613625 0.9366051088269665 0.9911748257398053 0.916604248252935 1.0115574075047158 1.0 19.542358780037844 7.368442759683144 0.2354484213317116 1.0038492625292534 1.7586565022672234e-12 0.8413740612990832 0.028576978621539413 13.48421243550843 0.23210858468790305 0.039302370183522416 4.950771631540357 23358382.16816832 -7.368442759683144 -1.0038492625274948 VKFEER ddPTM_BT-474_Trastuzumab_2h_R1 2 VKFEER 6 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 ; 97.602 0.037288 6209800000.0 6364400.0 6594100.0 5747900.0 5692700.0 4904200.0 6190400.0 6287900.0 5647900.0 8194800.0 6688900.0 False True 6330134.77755131 6813580.632282368 6557154.358357569 6413395.236314317 5528720.800529228 5762472.21863416 5983730.254889352 6069374.977455085 6175301.344694138 6262008.675344604 1.0108792730477905 1.0880822728830555 1.0471327489811761 1.0241753994314584 0.8828989366139735 0.92022744096838 0.9555608376029696 0.9692377146253446 0.9861534317268101 1.0 22.578194076502125 3.423988994603259 8.466450029345207 0.9508677187277085 1.0498737417946262 0.6136831077058709 0.03545223701199895 0.17421727197481007 25.195876123433866 0.010092099042227463 0.013694272617823192 2654.538292833391 -3.423988994603259 0.09900602306691775 VKFQGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKFQGGR 7 1 Q9UK45;K7ENY5;K7EML7 Q9UK45 LSM7 U6 snRNA-associated Sm-like protein LSm7 0 ; 97.068 0.01119 1005890000.0 588450.0 841860.0 726230.0 751040.0 810330.0 866290.0 947480.0 880870.0 1293540.0 1128470.0 False True 585281.850582941 869880.8011848831 828476.8714956805 846121.586994134 913520.7222977966 806405.4113273119 901646.7726749114 946604.9923672274 974764.3995479647 1056450.0784682261 0.5540080525447602 0.8233998169096125 0.7842082540207771 0.8009101463847181 0.8647078938385178 0.7633161545092028 0.8534684137486478 0.8960243476338552 0.9226790923820086 1.0 20.01079316504194 6.998656649362951 0.15559729156688762 1.0166367399662044 1.1900851036326915e-15 0.7044076040051113 0.061286975182115885 28.072787126355415 0.37509284736486603 0.20121373549955326 6.148004617869841 9969115.997984469 -6.998656649362951 -1.0166367399662033 VKGDMDVSLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKGDMDVSLPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 122.45 0.00035622 1786220000.0 3494900.0 3406700.0 3359800.0 2723000.0 2558900.0 4379000.0 4038700.0 3482400.0 5306900.0 4050200.0 False True 3476083.8467198913 3520089.95010636 3832830.636094882 3067731.5208045207 2884760.7472114232 4076290.03705722 3843332.651667748 3742274.3712688955 3999085.6038167346 3791712.768449323 0.9167582195688012 0.9283640837451812 1.0108441409348565 0.8090622122885945 0.7608067708122283 1.0750524330260067 1.0136138696074113 0.9869614603743717 1.0546910718272102 1.0 21.85441825000845 2.715658372195777 24.987153761358982 1.0210433874460823 0.8903209090430579 0.5189907504618966 0.06764444781075396 747.3897806337898 815427.4852831126 0.0234989516455972 0.022167690305791167 519.5871144362374 -2.715658372195777 -0.1307224784030243 VKGDMDVSVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKGDMDVSVPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 127.37 0.00026265 2225400000.0 5173400.0 4866200.0 4402300.0 3843400.0 3879300.0 6209200.0 5841500.0 4960800.0 7690400.0 5814400.0 False True 5145546.98921877 5028168.525319981 5022105.574522443 4329974.045927321 4373305.860587471 5779972.618884605 5558924.3283029655 5331000.086431976 5795203.966080425 5443320.0140417125 0.945295697468677 0.9237319342513766 0.922618101005876 0.7954656413287517 0.8034261901387373 1.061846925033703 1.0212378316841628 0.9793655476216734 1.064645097317627 1.0 22.376055424255362 2.730193847065243 24.91510465596188 1.0200864927357103 0.8785237973701687 0.6689502447798086 0.05174676682438359 409.90286063010797 1220632.5226741391 0.01819525448972964 0.017419344379356504 537.2715536741182 -2.730193847065243 -0.14156269536554156 VKGDVDVSVPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKGDVDVSVPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ; 103.88 0.0024395 1722690000.0 2855660.0 2467350.0 2446990.0 2091390.0 2325970.0 3555300.0 3121200.0 2957400.0 4432100.0 3461000.0 False True 2840285.443853655 2549474.253205428 2791504.922381635 2356159.7595649515 2622168.4923957004 3309530.479275984 2970215.631858118 3178096.205372915 3339868.3420972903 3240116.016888824 0.8765999208204006 0.7868465943554226 0.861544743407692 0.7271837635700923 0.8092822845626128 1.0214234496620935 0.9167003947933119 0.9808587682685942 1.030786652295324 1.0 21.627614041074057 2.7468719383284217 24.45460846932855 0.9820280733526882 0.8088859324210346 0.7731730794753803 0.04800075997245561 215.52632383590722 634148.0842843193 0.01446808260067099 0.0151064908387667 558.3055412903137 -2.7468719383284217 -0.1731421409316536 VKGEYDMTVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKGEYDMTVPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 113.77 0.0012289000000000002 828680000.0 667450.0 566960.0 621820.0 505790.0 507360.0 816580.0 627790.0 618890.0 953360.0 780890.0 False True 663856.5233606668 585830.9208654419 709366.85104367 569822.9621401828 571969.2886416771 760131.7466225583 597421.3993093063 665074.7144597417 718417.202369504 731052.9316464363 0.9080827045800451 0.8013522626139621 0.9703358270461673 0.7794551358365523 0.7823910744103304 1.0397766204297032 0.8172067622570467 0.9097490560114406 0.9827157121872491 1.0 19.479616342255003 1.3055803893483855 3.0348961161880883 0.997906633462824 0.8713550708338759 0.2607717041391657 0.07993120357326522 0.3337148426376141 5.074815965076899 0.06600917417442921 0.019875606141667466 20.210655032952232 -1.3055803893483855 -0.12655156262894818 VKGNVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKGNVFK 7 1 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 ; 121.52 0.0040402 4618100000.0 6846700.0 7492500.0 6573300.0 6529900.0 6488800.0 8827800.0 8810200.0 8203600.0 12141900.0 9567400.0 False True 6809838.127939881 7741883.333188106 7498763.503852174 7356584.670474262 7315110.217869202 8217554.964405965 8384016.967767654 8815794.289036721 9149691.438124396 8956800.34093676 0.7602980828785187 0.8643581455984995 0.8372145429634423 0.8213407009701037 0.8167102022399375 0.9174654621749133 0.9360504475519882 0.9842570955550304 1.021535714746932 1.0 23.094552016263208 2.2838304442640993 1.1198267306886311 1.008535457545563 0.8193526827769972 0.8894488735996636 0.028048263550243827 0.15061678896862762 0.36620537126177694 0.01821565921850223 0.010726084262779222 192.23410686937137 -2.2838304442640993 -0.1891827747685657 VKKDDEEEDPLDQLISR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKKDDEEEDPLDQLISR 17 2 Q9NYJ1;Q9NYJ1-2 Q9NYJ1 COA4 Cytochrome c oxidase assembly factor 4 homolog, mitochondrial 0 ; 175.39 6.9504e-10 153455000.0 361875.0 272082.0 261557.0 215994.0 242355.0 403171.0 360293.0 336264.0 688550.0 341757.0 False True 359926.7052080918 281138.0848929578 298381.95210580056 243338.8182536363 273217.4726993722 375300.73773244966 342864.25113708095 361357.7271939935 518866.07859730016 319945.77566711156 1.1249615796852355 0.8787054128367948 0.9326016306471033 0.7605626851808127 0.853949304783577 1.1730135737842413 1.0716323740239502 1.129434281295119 1.6217312996723412 1.0 18.287467892659105 2.207330048163962 1.2599725925859369 1.262736585862315 0.9088699849332353 0.3819885112263087 0.1796152005050058 0.4672342830560916 1.4263713516305538 0.11433778234829968 0.06359204734997952 161.18701330774851 -2.207330048163962 -0.3538666009290796 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 39 3 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 342.26 1.6979999999999995e-130 378580000.0 102330.0 78953.0 49364.0 61644.0 54021.0 113110.0 116190.0 102320.0 291550.0 99788.0 False True 101779.06664993192 81580.90287690367 56314.02212042021 69448.1240794983 60900.25414244725 105290.9719323002 110569.44581109658 109955.63797043236 219701.40906984624 93419.44440719497 1.0894848208077452 0.8732754020812874 0.6028083604839232 0.7434011679280502 0.6519012666891524 1.1270776935191333 1.1835806401197217 1.177010189561391 2.3517738781684008 1.0 16.511435244582994 1.934265356364522 1.362395514919868 1.5955623486312045 0.8029217137868742 0.4286118040726371 0.35561719550359866 0.385201303892698 1.3273789330242713 0.24989025133986886 0.11167704699391659 85.95385439649826 -1.934265356364522 -0.7926406348443303 VKLDGSR ddPTM_BT-474_Trastuzumab_2h_R1 6 VKLDGSR 7 1 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 ;;;;; 123.92 0.0038278 4133740000.0 5864830.0 6330430.0 6139870.0 5415490.0 4876480.0 5955590.0 6498740.0 5615670.0 9253630.0 6418490.0 False True 5833254.406923876 6541134.535724252 7004310.3272932535 6101090.478737294 5497470.822838551 5543894.081250876 6184371.118602339 6034739.811194464 6973196.878789237 6008856.473054251 0.9707761257207866 1.0885822560510334 1.1656644419288353 1.0153496769471282 0.9148946804589316 0.922620486295783 1.029209325657079 1.0043075314340228 1.1604865102136181 1.0 22.5186590315378 3.5023397052270457 24.512205721112675 1.000083466531006 1.0787220846897878 0.14068020383225088 0.07691649425329729 1049.2015428898064 1019815.8891899185 0.02107105564606572 0.03247679793156703 3179.3599942754017 -3.5023397052270457 0.0786386181587817 VKLDHDGAILDVDEDDVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKLDHDGAILDVDEDDVEK 19 1 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;H0YEV9 Q92614 MYO18A Unconventional myosin-XVIIIa 0 ; 130.85 1.0063e-05 517010000.0 982360.0 690900.0 641670.0 548360.0 568170.0 855650.0 885850.0 855380.0 1360320.0 888230.0 False True 977071.0829104573 713896.1888421313 732011.5585043767 617782.3197753831 640523.0816925686 796500.9294834451 842998.0512243728 919212.7991316302 1025087.363354118 831542.4009480387 1.1750105368006512 0.8585204891875876 0.8803057519013014 0.7429354402987167 0.7702831280308863 0.9578596696636962 1.0137763874256727 1.1054310617036953 1.2327541712670567 1.0 19.665430303887835 2.1035101920288635 1.9862128264217243 1.1226822305325077 0.877234012522867 0.3893475684575971 0.12210431557743784 0.3258252193028901 2.48302978440208 0.06689315314486595 0.03819813848425523 126.91419283359023 -2.1035101920288635 -0.24544821800964067 VKLEAEIATYR ddPTM_BT-474_Trastuzumab_2h_R1 4 VKLEAEIATYR 11 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;; 184.1 4.6123e-06 30966400000.0 15015700.0 15814900.0 14057000.0 14209600.0 14333400.0 17895700.0 17346200.0 16293800.0 21652100.0 18509200.0 False True 14934857.139601087 16341289.386191048 16036103.41436569 16008533.903056897 16158673.529282184 16658612.380946526 16507098.037081042 17509726.094239924 16316230.078275496 17327927.009476636 0.861895201395598 0.9430608391444634 0.9254484627962452 0.9238574178147124 0.9325220218462955 0.961373646820877 0.9526297074112395 1.0104916811263034 0.9416146587732137 1.0 24.046595735210865 7.999999999994333 0.1767432557227065 1.0075493908815953 0.489594636395796 0.6538967790202395 0.02319612193094255 33.77868492835278 0.3749637968754518 0.053560567251577894 4.681404137242704 99999999.99869522 -7.999999999994333 -0.5179547544857994 VKLEGSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKLEGSK 7 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 ; 92.062 0.014542 1646160000.0 4173300.0 3830000.0 3896800.0 3252000.0 2410380.0 2698150.0 3099130.0 2849940.0 5103000.0 3242420.0 False True 4150831.416497218 3957479.234716112 4445435.568407214 3663702.86656493 2717327.605558434 2511633.241261916 2949213.242073708 3062616.994502089 3845434.026696708 3035485.979624575 1.367435542235839 1.3037382683630672 1.464488914871226 1.2069575979455032 0.8951870059022673 0.8274237661188445 0.9715786077979063 1.0089379476827198 1.2668264826485236 1.0 21.533496078973783 3.444766652631361 4.506466521982216 0.9885520144754577 1.3682559373023822 0.7013991214866786 0.11283959356726697 0.11165373229292545 5.308093526400256 0.03307006403708116 0.04690207031481978 2784.6245817686586 -3.444766652631361 0.37970392282692444 VKLNFDMTAS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKLNFDMTASPK 12 1 Q9ULU4-19;Q9ULU4-22;A0A087WVZ6;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-12;Q9ULU4-20;Q9ULU4-7;Q9ULU4-5;Q9ULU4-16;Q9ULU4-9;Q9ULU4-14;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;H7C4X9;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-17;Q9ULU4-8;Q9ULU4-4;A0A087WYS3;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 VKLNFDMT(0.004)AS(0.996)PK;VKLNFDMT(0.011)AS(0.989)PK 89.374 0.0057285 1367410000.0 3820600.0 3011300.0 2912900.0 2784100.0 2810400.0 4249900.0 4129400.0 3152300.0 6572700.0 3769300.0 True False 3800030.314108562 3111529.3001307114 3323011.0006193197 3136566.774539796 3168287.7814541357 3956114.416188507 3929645.1461601024 3387540.63305506 4952946.154667734 3528740.0469399127 1.0768802075414736 0.8817677864451925 0.941699007695679 0.8888630879057795 0.8978524173809976 1.121112454746903 1.1136114006379843 0.9599858839113696 1.4036018773791168 1.0 21.750721723781805 2.735177765243316 24.776635102710504 1.1036287093034043 0.9318620756336891 0.3547718760376364 0.12182095254178288 310.7185904559214 2275750.932459686 0.037463932887852755 0.036683814953407966 543.4727400154243 -2.735177765243316 -0.17176663366971523 VKLPSGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKLPSGSK 8 1 P62917;E9PKZ0;G3V1A1 P62917 RPL8 60S ribosomal protein L8 0 68.557 0.065025 0.0 1232400.0 1048100.0 1082600.0 891990.0 917140.0 1063700.0 1195700.0 1015600.0 1720000.0 1274500.0 False True 1225764.8953325122 1082985.37491017 1235020.669872112 1004915.8425422044 1033932.3426853275 990168.9226804681 1137859.4229824268 1091389.229112305 1296129.0468191924 1193160.3188456527 1.0273262326712336 0.9076612403251276 1.0350835930136848 0.842230358041433 0.866549386829782 0.8298708120283678 0.953651747389045 0.914704597424252 1.086299155567928 1.0 20.18635647293081 1.2498191979349227 24.876886153192583 1.0431495726418887 0.9192238526537199 0.33270556744020674 0.06845388679325116 196.57567380040376 434358.6737674104 0.04652468477968723 0.016653874852901058 17.775392448130894 -1.2498191979349227 -0.12392571998816881 VKNFLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKNFLK 6 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 95.957 0.091017 0.0 518900.0 687300.0 657090.0 548350.0 480980.0 581930.0 596980.0 569480.0 989380.0 624570.0 False True 516106.3000552101 710176.3650183757 749602.5604713333 617771.0537764077 542229.9520081868 541702.548815873 568101.7967149365 611977.4893608466 745560.5560127757 584709.4078787211 0.8826714485877735 1.2145800212020508 1.2820087215473945 1.0565437214660724 0.9273494571865256 0.9264474652137485 0.9715968121258118 1.0466352706399096 1.275095878339994 1.0 19.157360278667717 3.4908123736855963 24.629683029142875 1.0177374408684527 1.1409094260743975 0.10037419416230664 0.13343129032552212 1036.0872129839574 1863869.521134852 0.03657377053538201 0.05407308762628947 3096.0814239449714 -3.4908123736855963 0.12317198520594475 VKNQYEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKNQYEK 7 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 68.735 0.056221000000000014 424860000.0 244080.0 250820.0 229060.0 228300.0 236150.0 253590.0 311860.0 271230.0 434460.0 351180.0 False True 242765.9003998375 259168.39207610794 261309.65697478823 257202.75659187342 266222.3027292888 236059.92018665027 296774.1403791084 291470.5598780329 327393.1544657367 328767.3917396755 0.7384123441051731 0.7883032155491947 0.7948162242978719 0.7823244124999222 0.8097588429332094 0.71801500427867 0.9026872732381561 0.8865555623862632 0.9958200317048872 1.0 18.326707689185223 1.6783579023572253 1.246904352673244 1.001505438787704 0.7760022046521954 0.838837187438416 0.038107111523244086 0.1541228588518649 0.45433663934543084 0.030327226978089584 0.0113920792258072 47.682377570954415 -1.6783579023572253 -0.22550323413550866 VKPAPDETSFSEALLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPAPDETSFSEALLK 16 1 Q12905;B4DY09;A0A0A0MRL0;X6R6Z1 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ; 219.95 1.0889e-14 1675650000.0 1563210.0 1377090.0 1303490.0 1135610.0 1303240.0 1663590.0 1573870.0 1578540.0 2021850.0 1643610.0 False True 1554793.8510489569 1422925.6081815162 1487010.061861814 1279378.1095632843 1469199.8890913338 1548589.9389696314 1497735.8953327353 1696338.670463703 1523592.1589019669 1538713.4026346852 1.0104505805868316 0.9247502528704113 0.9663983294846582 0.83145965153267 0.9548236121006513 1.0064186978017056 0.9733689800636132 1.1024396535177516 0.9901728004014089 1.0 20.553293112815165 2.51126054233141 1.8605935654659231 1.0342011180473085 0.9325776754524857 0.32977255359671154 0.05364783251635375 0.3433394429942154 2.4002342082546075 0.022557034530329277 0.018591917012812244 324.53425383814243 -2.51126054233141 -0.10162344259482281 VKPAPDETSFSEALLKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VKPAPDETSFSEALLKR 17 2 Q12905;B4DY09;A0A0A0MRL0;X6R6Z1 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 142.3 3.3283e-07 805880000.0 305200.0 434590.0 353450.0 382780.0 370620.0 428800.0 461370.0 396060.0 715560.0 499560.0 False True 303556.8371109075 449055.06543479714 403212.6877575264 431239.9087526819 417816.26016315474 399158.06528662617 439051.7704954437 425616.00835192925 539219.8260127574 467677.65310516604 0.6490727857006395 0.9601807194619554 0.8621594063354926 0.9220879079627727 0.8933851283871392 0.8534897116344963 0.9387914252056742 0.9100627441273563 1.1529732550456153 1.0 18.83515496899526 7.531596346681952 0.19959589506706044 1.0269758049960491 1.952327752964491e-14 0.4555289365804721 0.08863575066842934 45.46165972554826 0.6450462264339476 0.16033189568058087 14.058814433000446 34009194.56209741 -7.531596346681952 -1.0269758049960296 VKPAPLEIKPLPEWEELQAPVRS(ph)PITR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPAPLEIKPLPEWEELQAPVRSPITR 27 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 VKPAPLEIKPLPEWEELQAPVRS(0.997)PIT(0.003)R;VKPAPLEIKPLPEWEELQAPVRS(0.981)PIT(0.019)R 194.83 5.463100000000001e-19 1826700000.0 1368320.0 1227250.0 1251400.0 1158710.0 1098330.0 1505380.0 1421150.0 1373840.0 1889390.0 1486500.0 True False 1360953.1171546422 1268098.2743617087 1427586.2426362114 1305402.5671947878 1238195.815188057 1401316.6238833515 1352403.545179793 1476362.9170181658 1423775.1510289027 1391630.2973433211 0.9779559411380717 0.9112321546768275 1.0258372826184738 0.9380383351001013 0.8897447961228088 1.0069604165406012 0.9718123755724393 1.0608873059436854 1.0230987021099982 1.0 20.408344562816254 2.1529715628324153 1.9586812168644852 1.0310496649131635 0.9521388209101782 0.35834713916722705 0.041104818652734944 0.328482187333845 2.476554719191898 0.02096755806225438 0.012515457316487162 142.22356575078246 -2.1529715628324153 -0.07891084400298531 VKPAS(ph)PVAQPK ddPTM_BT-474_Trastuzumab_2h_R1 6 VKPASPVAQPK 11 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK 160.48 7.2165e-05 3910470000.0 6563800.0 4805990.0 4457550.0 4124970.0 4197690.0 6397500.0 6328220.0 5760720.0 9263060.0 5944410.0 True False 6528461.230106744 4965954.471867695 5085134.294280832 4647190.779057298 4732240.93984209 5955255.883095127 6022099.822452006 6190614.178743445 6980302.981644757 5565032.664534558 1.1731218168245494 0.8923495640044069 0.9137653992020435 0.835069811660481 0.8503527697151226 1.0701205621033325 1.0821319811526526 1.1124129096664 1.2543148266010347 1.0 22.407958724963954 2.574305964226253 4.607024596715811 1.115133625563762 0.9247368856298827 0.4002481818140139 0.10510541961665514 0.22124000401705685 7.825439084175292 0.03501229415614191 0.03254299351059667 375.23726705270946 -2.574305964226253 -0.1903967399338794 VKPEELESFCEGGMLDSDTLNPDWK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKPEELESFCEGGMLDSDTLNPDWK 25 1 O95104-2;O95104-3;O95104 O95104-2 SCAF4 Splicing factor, arginine/serine-rich 15 0 102.95 6.365399999999998e-06 0.0 117250.0 117130.0 107400.0 116180.0 107540.0 126710.0 128930.0 127900.0 147140.0 128430.0 False True 116618.73902769972 121028.60124341972 122520.98646246508 130888.3760877962 121234.58156048167 117950.83594325645 122693.1633395705 137444.5474630404 110879.31857498609 120233.487445545 0.9699355936965361 1.0066130810539353 1.0190254733978013 1.0886183114922696 1.0083262503334611 0.9810148441105279 1.0204574943826652 1.1431469749664416 0.9221999704966096 1.0 16.87547924605196 4.532385702872651 2.065513496567242 1.034027665747256 0.9658566575973059 0.04859662694443978 0.05688850591350725 1.1169964587585834 7.161796972849273 0.014973269173974148 0.12141371858792803 34071.06451602598 -4.532385702872651 -0.06817100814995014 VKPET(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VKPETPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR 108.47 0.006150699999999999 11725400000.0 7037300.0 6001290.0 5332200.0 5175600.0 5356040.0 7191310.0 6943940.0 6708810.0 9370100.0 6618240.0 True False 6999411.9587175315 6201039.309793585 6082927.411686752 5830830.429333773 6038099.946263735 6694191.666222871 6608035.09377319 7209455.468846911 7060964.407907283 6195858.257039671 1.129692073049746 1.0008362122790702 0.9817731715820632 0.9410851874651657 0.9745381020302244 1.0804300854715323 1.0665245749069885 1.1635927049582842 1.1396265238774124 1.0 22.56287270922231 2.4805872430021156 2.475319821308423 1.1120872989436448 1.0010774037396413 0.2864851723293864 0.06296658405266076 0.30412866910682457 3.771560296769277 0.024317370322936033 0.020533213842995095 302.40379916653853 -2.4805872430021156 -0.1110098952040035 VKPET(ph)PPRQSHSGSIS(ph)PYPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKPETPPRQSHSGSISPYPK 20 2 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 VKPET(0.999)PPRQSHSGSIS(1)PYPK 139.16 9.5389e-07 917510000.0 487650.0 515130.0 494040.0 641420.0 545990.0 709170.0 863140.0 692040.0 1624900.0 792820.0 True False 485024.54658300825 532275.7906473392 563596.5377273393 722623.7062337263 615518.5901637287 660146.7471066157 821386.6206849981 743683.538907916 1224465.1675444813 742221.5488326489 0.6534767783902867 0.7171386919235797 0.7593373415441153 0.973595697093751 0.8292922660785097 0.8894200769903288 1.1066596247129425 1.001969748894473 1.649730015883122 1.0 19.50149036167907 2.244322650509618 0.8384652738759011 1.2584939175425447 0.7510153011908516 0.5382738804705083 0.18182485889471675 0.48251313136749885 0.6475939557490906 0.13834259796983747 0.08203345891376573 175.51839968709342 -2.244322650509618 -0.5074786163516931 VKPETPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPETPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 104.44 0.007327199999999998 0.0 162129.0 165150.0 139969.0 126742.0 160299.0 187001.0 196449.0 183013.0 232460.0 193023.0 False True 161256.11547822529 170646.9179147167 159675.41856764245 142787.52420485005 180712.12748338876 174074.06102300447 186946.01136194266 196670.35938118392 175173.34780441277 180704.10688469547 0.8923765943024214 0.9443444360874648 0.8836291621724397 0.7901730993638157 1.0000443852595913 0.9633099325964875 1.0345421284820606 1.0883557810154048 0.969393285102193 1.0 17.463269769321418 3.0972036154654523 7.799901534883886 1.0201946425818953 0.8830777485318221 0.635684977739573 0.04855456068179694 0.15825811257116887 11.182928949012835 0.015222916025872155 0.018230898592667126 1250.8453415141873 -3.0972036154654523 -0.1371168940500732 VKPFVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPFVVR 7 1 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ; 105.95 0.007124899999999998 996870000.0 1059770.0 1574510.0 1250500.0 1263330.0 1403340.0 1380460.0 1500560.0 1486860.0 1915880.0 1390960.0 False True 1054064.316071517 1626916.6135386066 1426559.5304591488 1423267.4484678574 1582047.0307521496 1285032.0494533011 1427972.1801041323 1597817.0433220982 1443737.0454767174 1302187.741939231 0.8094564878193323 1.2493717773105328 1.0955098750466672 1.092981758796403 1.2149147006991092 0.9868254845799873 1.0965947029862082 1.2270250992707188 1.1087011488271958 1.0 20.312506032296728 4.7529276702689724 24.562622790251922 1.12701353504463 0.8094562082179617 0.543877727687123 0.08479203925571535 1459.3404812049025 2494905.636585035 0.019487460290045135 0.41421813346371544 56614.499236431744 -4.7529276702689724 -0.31755732682666826 VKPLQDQNELFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPLQDQNELFGK 13 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ; 138.21 4.7143e-05 1535720000.0 1984290.0 2029650.0 1889750.0 1654030.0 1786160.0 2100900.0 2221780.0 2156800.0 3042000.0 2239800.0 False True 1973606.8031153455 2097205.6733006677 2155810.3739985446 1863430.028408482 2013616.8886002414 1955669.7279866429 2114304.0133761805 2317751.3680084874 2292339.860711618 2096854.0464107466 0.9412227839575351 1.0001676925919203 1.0281165623752953 0.8886789386214915 0.9603037903601421 0.9326685046745272 1.0083219750059875 1.1053470182990837 1.0932281455809911 1.0 20.999795014045475 1.9656629113253754 4.691712290462102 1.0747693545974206 0.9608202221825883 0.5430838677163485 0.044030527862363514 0.1450826902468724 7.5356302097611145 0.019605184309656763 0.01208467271774284 92.39807244720734 -1.9656629113253754 -0.11394913241483229 VKPPGGHS(ph)PQVNHLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPPGGHSPQVNHLK 15 1 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 VKPPGGHS(1)PQVNHLK;VKPPGGHS(1)PQVNHLK 175.39 5.1872e-07 1725450000.0 2115600.0 1820680.0 1630940.0 1516460.0 1645050.0 2294600.0 2163600.0 1953650.0 3199900.0 2247600.0 True False 2104209.8446652577 1881280.2331757005 1860562.1756153912 1708443.6805138544 1854537.3665247392 2135979.702907398 2058938.4022453642 2099441.283433688 2411327.521463219 2104156.243732828 1.0000254738366456 0.8940782029752031 0.8842319486288268 0.811937652254868 0.8813686588381581 1.0151240951185803 0.9785102263094083 0.9977592156888616 1.1459831125399038 1.0 21.00481040498545 2.7294383853484856 9.99626194585404 1.0208447341108415 0.889155568367602 0.5442627286780624 0.06067585817845612 0.20992654831953156 213.25928038754168 0.019822945150129192 0.019365931840242174 536.3377742050664 -2.7294383853484856 -0.13168916574323952 VKPTLIAVRPPVPLPAPSHPASTNEPIVLED ddPTM_BT-474_Trastuzumab_2h_R1 1 VKPTLIAVRPPVPLPAPSHPASTNEPIVLED 31 2 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 0 103.16 9.6537e-05 223250000.0 226160.0 251620.0 253060.0 254430.0 239390.0 303350.0 302680.0 262540.0 321620.0 296920.0 False True 224942.3796887381 259995.01959249788 288688.6483630487 286640.8119127042 269874.8975243045 282380.1285090906 288038.2120501136 282132.0679511069 242361.06048720263 277970.31139399885 0.8092316713992587 0.935333771037071 1.0385592868364186 1.0311921819104475 0.9708766960431979 1.0158643457028804 1.0362193379775884 1.0149719462349671 0.8718954886648913 1.0 18.08457127863782 4.630388966364989 2.888138923876532 1.001383848370385 0.7966819026628157 0.5966485605041207 0.046873205376989066 0.20746100296604592 2.7080313926012107 0.01134599424326889 0.08623526435636206 42696.17465698478 -4.630388966364989 -0.20470194570756928 VKPYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKPYIR 6 1 P48200 P48200 IREB2 Iron-responsive element-binding protein 2 0 ; 103.71 0.03142 1728020000.0 2315900.0 2594700.0 2314300.0 2121790.0 2322180.0 2828300.0 2978500.0 2453580.0 3094600.0 3014400.0 False True 2303431.451720678 2681063.0209707273 2640133.3237437923 2390408.3964479705 2617895.8583607874 2632786.278102064 2834418.5760250534 2636678.5986267924 2331977.2955155084 2822018.411242323 0.8162354442991212 0.9500515695751455 0.9355478735454243 0.8470562725335492 0.9276678876125136 0.9329444016430232 1.00439407649976 0.9343236699388012 0.8263508438589221 1.0 21.428295969634032 3.0179047632169644 24.51663235266661 0.9398525867701486 0.8941873038703271 0.1508694866149347 0.05820102424690869 422.4348719577233 578426.2660332582 0.016713185089710442 0.01997203165789471 1042.0888838334513 -3.0179047632169644 -0.045665282899821524 VKPYVNGT(ph)SPVYSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VKPYVNGTSPVYSR 14 1 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 VKPYVNGT(0.5)S(0.5)PVYSR 122.5 0.00017516 783150000.0 256760.0 285310.0 274480.0 267160.0 297620.0 344320.0 323040.0 279090.0 319010.0 291730.0 True False 255377.6326887175 294806.37087646255 313124.3981770712 300982.4286074684 335520.1428680542 320517.96884209645 307413.32106736064 299917.11299030436 240394.26001499474 273111.54163738113 0.935067156655688 1.0794357833030956 1.1465073804636803 1.1020494659544353 1.2285095710584615 1.1735789960413257 1.1255962279160032 1.0981488046686574 0.8802054229336592 1.0 18.05913075782296 1.3183445612008047 6.37340140586719 0.9415619075563549 1.1178757091883589 0.4421990697190783 0.07666086293346219 0.17346611952899155 10.559327416470568 0.05439159042732852 0.019405889888146507 20.813473346588413 -1.3183445612008047 0.17631380163200394 VKPYVNGTS(ph)PVYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VKPYVNGTSPVYSR 14 1 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 VKPYVNGT(0.027)S(0.973)PVYSR;VKPYVNGT(0.142)S(0.858)PVYSR;VKPYVNGT(0.225)S(0.772)PVY(0.002)SR 180.78 1.0376e-06 1536820000.0 503732.0 493242.0 519699.0 534596.0 542681.0 531348.0 534775.0 548817.0 686520.0 562020.0 True False 501019.96288188593 509659.261798915 592868.1018953132 602275.7987866367 611788.2086277085 494617.16341865284 508905.8902111126 589772.5113762581 517336.3448966933 526151.4024304705 0.9522353462663143 0.9686551426920603 1.1268013335261597 1.1446815422414955 1.1627607677213303 0.9400662264394805 0.9672232894568085 1.120917873927353 0.9832461578681394 1.0 19.00511847567654 VKQELLEEVKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKQELLEEVKK 11 2 P50552 P50552 VASP Vasodilator-stimulated phosphoprotein 0 ; 115.12 0.00065578 701800000.0 1230390.0 834560.0 837560.0 716710.0 743330.0 1117080.0 1082930.0 1040250.0 1882910.0 1199640.0 False True 1223765.7169491798 862337.825097827 955481.1677979736 807445.4125140684 837988.6694379095 1039858.8889234704 1030544.5387056633 1117878.7372824696 1418892.0602013513 1123077.9481365224 1.0896534109495466 0.7678343489235713 0.8507701263152434 0.7189575878093144 0.7461536136724526 0.9259009053190529 0.9176073133798094 0.9953705699032915 1.2633958867731854 1.0 20.09902663195796 1.7020141039771004 1.778109050930547 1.1272023503931505 0.8371906591756486 0.45855299543231054 0.11792589827715537 0.27537121386685387 1.76097007692115 0.08634295322351102 0.033632922353704874 50.35169605415283 -1.7020141039771004 -0.2900116912175019 VKQIESK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKQIESK 7 1 P10599;P10599-2 P10599 TXN Thioredoxin 0 ; 88.948 0.016628 4158300000.0 5734500.0 5667800.0 5564400.0 5334100.0 5376400.0 6537800.0 7246200.0 6180600.0 10152800.0 7335800.0 False True 5703626.08916284 5856449.296742545 6347819.153368176 6009396.51308241 6061052.671580556 6085857.274325803 6895673.622827852 6641827.756450881 7650778.480549938 6867622.963505649 0.8305094964402887 0.8527622043119648 0.9243109569497779 0.8750329691970818 0.8825546632057141 0.8861664809885273 1.00408447864294 0.9671217816914766 1.1140358929437384 1.0 22.711379406041637 2.0545698914536064 1.2428382413907997 1.041899523808105 0.8711665776309593 0.7458986289680769 0.04174848694662219 0.22882251915249066 0.6589496655122752 0.02890699055023419 0.014054535939923016 113.38873010620618 -2.0545698914536064 -0.17073294617714574 VKS(ph)PGGPGSHVR ddPTM_BT-474_Trastuzumab_2h_R1 7 VKSPGGPGSHVR 12 1 O75382;O75382-3;O75382-2;O75382-4;A0A1W2PPI7 O75382 TRIM3 Tripartite motif-containing protein 3 1 VKS(1)PGGPGSHVR;VKS(1)PGGPGSHVR;VKS(1)PGGPGSHVR;VKS(0.999)PGGPGS(0.001)HVR;VKS(1)PGGPGSHVR;VKS(0.988)PGGPGS(0.012)HVR;VKS(0.996)PGGPGS(0.004)HVR 146.2 3.9085e-05 7613120000.0 1964777.0 1805330.0 1607000.0 1677500.0 1616364.0 2178700.0 2140510.0 1868898.0 2667650.0 2234680.0 True False 1954198.8589392481 1865419.3177049684 1833251.6317055994 1889871.3280020487 1822198.3744599796 2028091.5971081434 2036965.353757726 2008364.6588317538 2010243.4021786188 2092060.8091941995 0.934102321668149 0.8916659159747241 0.8762898399744481 0.9033539176760219 0.8710064097810986 0.9694228715509015 0.9736645057379117 0.9599934428317679 0.9608914776014115 1.0 20.996493355826765 2.727199045670183 24.892061698580715 0.9695776307142054 0.8944758275062713 0.8040026979661682 0.019099927642537172 293.67749100770453 643417.2263156419 0.005965705184183608 0.005672134435853021 533.5793893437298 -2.727199045670183 -0.07510180320793414 VKS(ph)S(ph)TPPRQS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKSSTPPRQSPSR 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 VKS(0.964)S(0.611)T(0.425)PPRQS(0.963)PS(0.037)R;VKS(0.994)S(0.784)T(0.219)PPRQS(0.501)PS(0.501)R 76.176 0.019402000000000003 2181230000.0 1619630.0 1332410.0 1051700.0 1135170.0 1225660.0 1572730.0 1499640.0 1452300.0 2096550.0 1633210.0 True False 1610910.0920378107 1376758.4613911463 1199770.2184597258 1278882.405608398 1381740.5359440208 1464010.876908198 1427096.6840188736 1560678.0006299731 1579883.3448306862 1528977.1395385726 1.0535867740468405 0.9004441111569764 0.7846881339388778 0.8364300371386518 0.9037025474174283 0.9575099843219496 0.9333669203514414 1.020733378068012 1.0332942880411387 1.0 20.544135405767243 2.1219961161539946 1.2905922041449658 1.022332651535866 0.8884973011884738 0.36065223901509547 0.06677840294004012 0.48831197606546944 1.5374657370865632 0.047537539101876754 0.024572106580594694 132.43296918123593 -2.1219961161539946 -0.13383535034739213 VKS(ph)ST(ph)PPRQS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VKSSTPPRQSPSR 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 VKS(0.858)S(0.155)T(0.987)PPRQS(0.85)PS(0.15)R 93.753 0.008754099999999999 703430000.0 624950.0 501090.0 379060.0 411270.0 443250.0 610480.0 573280.0 562260.0 797430.0 576330.0 True False 621585.3386384725 517768.47773469804 432428.35315141536 463336.73983153666 499695.26015141746 568278.9545153439 545548.2562577288 604218.6962984293 600914.0615145518 539548.1259790623 1.1520479985182892 0.9596335392605748 0.801463914579876 0.8587496045709867 0.9261365874354064 1.0532497976601192 1.0111206581762817 1.119860615217625 1.1137357959016816 1.0 19.041392123704732 2.69049971740211 3.897569867579275 1.0697741331596695 0.9279448461096647 0.2919214221635541 0.09211435723133937 0.2800066479988216 8.98473854583707 0.03233694394101632 0.031159227185877457 490.34270372300506 -2.69049971740211 -0.14182928705000486 VKSGT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKSGTPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VKS(0.009)GT(0.991)PPR;VKS(0.072)GT(0.928)PPR 92.866 0.01855 4270600000.0 1859150.0 2133570.0 1960740.0 1981720.0 1869850.0 2055650.0 2301700.0 2039280.0 3008500.0 2295300.0 True False 1849140.5429709835 2204584.5876796977 2236795.148942401 2232605.54880967 2107964.3140307483 1913547.7539795993 2190357.9776521306 2191461.4288540157 2267095.48683462 2148811.988894803 0.8605408721318847 1.0259550854486716 1.040945024740322 1.038995296167332 0.9809905775492886 0.8905142766649367 1.019334399180589 1.0198479160483225 1.0550459968350483 1.0 21.03510782847191 2.0330117412009447 24.99385702223341 1.0252754665645316 0.9796065910339308 0.1511990975564913 0.05753972365897608 411.9311122893345 311879.493730111 0.022271149758458977 0.016448264046362997 107.89758920720578 -2.0330117412009447 -0.04566887553060084 VKT(ph)PEMIIQKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKTPEMIIQKPK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VKT(1)PEMIIQKPK;VKT(1)PEMIIQKPK 121.79 0.017636000000000002 2143390000.0 3539900.0 2322100.0 2106100.0 1940330.0 1974210.0 3659800.0 3074000.0 2638700.0 4873300.0 2804800.0 True False 3520841.5717198625 2399389.694760908 2402620.5734506333 2185975.5790534844 2225613.941440567 3406806.6402425277 2925298.876179629 2835613.1930471 3672340.5138744 2625795.2626899104 1.3408667544449187 0.9137763819037937 0.9150068200630948 0.8325003895445119 0.8475961447049795 1.297438032831446 1.114062058739074 1.0799064319059852 1.3985631576288207 1.0 21.324323000780787 2.7418360014668326 24.950754175478163 1.168931566625608 0.9561401717509141 0.27108342866461776 0.16949584353366015 382.1643382025631 2911202.8821185273 0.052414441418034224 0.05352679638878092 551.8690028365987 -2.7418360014668326 -0.21279139487469378 VKTDDIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKTDDIAR 8 1 Q52LJ0;Q52LJ0-1 Q52LJ0 FAM98B Protein FAM98B 0 ; 71.45100000000002 0.044423 206272000.0 295360.0 324700.0 356520.0 250740.0 201040.0 268220.0 312620.0 236980.0 512730.0 267210.0 False True 293769.8145775811 335507.4432147049 406714.91707260784 282483.6582910489 226641.2523425631 249678.58272196588 297497.37627562607 254664.65096005716 386374.5617300031 250156.4290300094 1.1743444520561963 1.341190568300192 1.6258423525218186 1.1292280569657533 0.9059981117470086 0.9980898100044985 1.1892453751006236 1.018021611307487 1.544531808469542 1.0 17.932471004562853 3.51562663017202 23.018836308126122 1.0970791071185415 1.3766997667040983 0.28649937877189735 0.19364256090158355 258.72067233967056 154664.04158129657 0.05073354301188642 0.07856652868778842 3278.1334562042066 -3.51562663017202 0.2796206595855568 VKTSEDADELHK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKTSEDADELHK 12 1 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 0 ; 93.958 0.0041336 316040000.0 788550.0 654930.0 640790.0 577110.0 634530.0 869060.0 822740.0 785950.0 1274630.0 819300.0 False True 784304.5344161404 676728.949136454 731007.6621534734 650172.066827578 715333.6343460327 808983.9277471915 782940.9230279858 844601.579973233 960514.5156669477 767011.5725619812 1.0225458943160364 0.8822930100989689 0.9530594951934727 0.8476691748676823 0.9326243044243346 1.0547219320889956 1.0207680705687363 1.101158848427912 1.2522816474054306 1.0 19.54888881950769 2.3376966133953454 1.3297978732833369 1.1217620296810145 0.9219069866990379 0.5276769160968142 0.07564994114878852 0.3206812834641869 1.1265791189712915 0.04214209582611741 0.026906825500296414 217.61890133164707 -2.3376966133953454 -0.19985504298197654 VKVDGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 VKVDGPR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ;; 93.992 0.01325 1449640000.0 3164020.0 3677250.0 3993820.0 2628080.0 1920440.0 2681240.0 3368350.0 2419510.0 5945400.0 3086670.0 False True 3146985.2678756714 3799645.0433054315 4556115.141094248 2960794.6585368845 2164996.650660322 2495892.189760057 3205410.0421534316 2600066.1222228375 4480235.834278386 2889676.0779688596 1.0890443021861722 1.314903449654532 1.576687150449306 1.0246112639095568 0.7492177642907604 0.8637273252836035 1.1092627532171357 0.8997777093584871 1.5504283917620012 1.0 21.462476350320216 3.611571116379457 9.060969060971109 1.00306966409772 1.3251133212336583 0.25903973873490305 0.22904060446384264 0.4090126262889625 28.050088494083926 0.06056368594561019 0.09388778575201324 4088.5669753348584 -3.611571116379457 0.3220436571359384 VKVDGPRS(ph)PS(ph)YGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 VKVDGPRS(1)PS(0.999)Y(0.001)GR;VKVDGPRS(0.999)PS(0.989)Y(0.012)GR 95.767 0.022358000000000003 4869320000.0 3434680.0 3524270.0 2632200.0 3762630.0 3469410.0 4121180.0 4243830.0 3760180.0 6449970.0 4665700.0 True False 3416188.064508819 3641573.1964837937 3002790.880507454 4238978.5722088525 3911218.798695837 3836292.5268142195 4038539.7298950497 4040783.725407157 4860461.318669997 4367931.031493262 0.7821066861811068 0.8337066611692472 0.6874629793504068 0.9704774506843976 0.8954396876909274 0.8782859663200103 0.9245887127742483 0.9251024561222837 1.1127605458111718 1.0 22.058518645978417 2.8946440301391374 0.4026279307364787 1.0323562210264203 0.7424436007826818 0.5736041621892272 0.0731281419670406 1.1818449700492977 0.3720912818342075 0.07350340109966433 0.1376745882988404 784.5922792186684 -2.8946440301391374 -0.28991262024373854 VKVDGPRS(ph)PSYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 VKVDGPRS(0.991)PS(0.009)YGR;VKVDGPRS(0.976)PS(0.024)YGR 94.569 0.0026584 1245520000.0 295330.0 523690.0 528410.0 829200.0 656350.0 533920.0 785250.0 595590.0 979530.0 718100.0 True False 293739.9760942474 541120.70507271 602805.534977944 934176.6349802089 739932.2820087613 497011.36711248953 747264.4575536926 640035.9501447394 738137.9565295372 672270.2432036585 0.436937346348173 0.8049154496174572 0.8966714518038384 1.3895849837536363 1.1006470827604447 0.7393029397582963 1.1115536722146948 0.952051584337113 1.0979780289128827 1.0 19.358681767197396 4.597068850485543 1.8497642626044983 1.0409702040168947 0.3485139500018495 0.5856869417810374 0.1573856466333957 0.44233177524966194 1.9572844415173747 0.042037550927687406 0.4809273436747693 39542.93041287144 -4.597068850485543 -0.6924562540150452 VKVDPSHDASK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKVDPSHDASK 11 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 73.435 0.026177 76675000.0 167480.0 119400.0 122680.0 112690.0 116560.0 156300.0 163940.0 154720.0 226610.0 164920.0 False True 166578.3062887771 123374.15682117593 139952.27764632442 126956.54244563411 131403.2250947529 145495.34889062418 156009.5958883828 166265.99205224076 170765.00191842855 154394.6644048842 1.078912324663905 0.7990830337092467 0.9064579931293085 0.8222858149599236 0.8510865683166446 0.9423599542862279 1.0104597622574807 1.0768894941616973 1.1060291660767163 1.0 17.23626337102195 2.232689646418273 2.186775477753765 1.066564067746209 0.8841242682193889 0.49128414705767287 0.07587559324786199 0.23186092456166948 2.2503008624888943 0.03356087728304034 0.022498409612716593 170.87937481154972 -2.232689646418273 -0.18243979952682 VKVEHVVSVLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKVEHVVSVLEK 12 1 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 130.07 0.00013401 223480000.0 568690.0 594350.0 557950.0 498090.0 506350.0 642460.0 692720.0 627820.0 936900.0 631690.0 False True 565628.2362273991 614132.5804578377 636504.5102116609 561148.1429296815 570830.6711284156 598048.2523881665 659210.4871526202 674671.116405364 706013.5488168043 591375.0033829815 0.9564628754879778 1.0384824805659194 1.076312841379014 0.9488871523476876 0.9652600597978587 1.011284293328278 1.1147080674387375 1.1408515959347016 1.1938508472255827 1.0 19.17371373842674 2.235487563070493 4.458388646693852 1.1272430689586286 0.9999027169960172 0.4697545753187029 0.058173057872416556 0.15830911652395793 7.640839729074487 0.021505894121106723 0.016520306358308326 171.9838089377483 -2.235487563070493 -0.1273403519626114 VKVETYNDESR ddPTM_BT-474_Trastuzumab_2h_R1 6 VKVETYNDESR 11 1 P27694;I3L4R8 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 ;;;;; 225.33 5.061e-12 2862720000.0 4106290.0 4338540.0 3907490.0 3886040.0 4046080.0 4908940.0 4997000.0 4314740.0 5899420.0 4863970.0 False True 4084182.190891712 4482945.681197184 4457630.627488062 4378012.265555343 4561324.305004956 4569596.5322018005 4755276.019606251 4636727.808605775 4445586.989177961 4553547.270345777 0.8969232004001083 0.9844952550271359 0.9789358411886142 0.9614509316871317 1.0017079068685255 1.0035245624791338 1.0443014505579418 1.018267195511881 0.9762909497237703 1.0 22.118559430123433 6.75789683536641 0.5452921905935677 1.0107223828438625 4.078621797962576e-17 0.6591881313599444 0.02174209204403031 19.667348984868656 0.730693997151761 0.010878948051184409 20.05319911274209 5726599.8211317165 -6.75789683536641 -1.0107223828438625 VKVEVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VKVEVK 6 1 Q15428;K7EMT0 Q15428 SF3A2 Splicing factor 3A subunit 2 0 92.925 0.09495 0.0 308500.0 288740.0 276100.0 248580.0 268210.0 313710.0 313080.0 271250.0 454600.0 304270.0 False True 306839.07027757214 298350.5363529841 314972.4800957787 280050.2025125184 302364.9536947814 292023.96609390766 297935.1243182555 291492.0523795911 342569.92132791027 284851.2281013474 1.077190617441894 1.047390732143285 1.1057438024585748 0.9831454980172286 1.061483763683135 1.0251806461933464 1.045932384789484 1.0233133075202363 1.2026275035262517 1.0 18.119849100662595 VKVGVNGFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VKVGVNGFGR 10 1 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 147.75 2.4011e-05 2762400000.0 1759280.0 2002790.0 1886070.0 1698130.0 1961460.0 2153800.0 2268000.0 1969600.0 2714000.0 2318700.0 False True 1749808.231954381 2069451.6544378777 2151612.261985678 1913113.0838868085 2211240.304515735 2004912.8754998487 2158288.175398632 2116581.5534261484 2045171.0657367946 2170718.5808610586 0.8060963071778218 0.953348661905768 0.9911981594280169 0.881327087147305 1.0186674237793656 0.92361713451799 0.9942735988110003 0.9750603196967911 0.9421631545280904 1.0 21.049741271641697 4.735339276667033 4.6990458529690295 0.9648286802318395 0.7970990833657833 0.6020085608202914 0.038721636184290975 0.11072589319481375 6.779299186461394 0.008465212864073255 0.06088439582604106 54367.48917432136 -4.735339276667033 -0.16772959686605626 VKYEETVFYGLQYILNK ddPTM_BT-474_Trastuzumab_2h_R1 2 VKYEETVFYGLQYILNK 17 1 P43490;A0A0C4DFS8;C9JG65 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 ; 166.9 2.0867e-09 335430000.0 827110.0 822970.0 786880.0 710050.0 751060.0 936230.0 1006140.0 918230.0 1388100.0 1076800.0 False True 822656.9316605608 850362.0589541292 897665.8643164306 799942.2571969342 846703.0391186096 871510.6237483631 957469.164371949 986752.985277463 1046021.354587047 1008077.7021051389 0.8160650016785715 0.8435481284610732 0.8904728895816875 0.7935323393488799 0.8399184282624887 0.8645272303200568 0.9497969872485964 0.9788461576095333 1.0376396109175627 1.0 19.943175414631565 2.07207479499129 1.5241520957285164 1.0127550124737015 0.836647089449036 0.8944584153593513 0.026019495844220718 0.11916069042014493 0.5224323631135224 0.016610863428511966 0.008501145181561143 118.05239301392912 -2.07207479499129 -0.1761079230246655 VLADPSDDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLADPSDDTK 10 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 Q15149-3;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 105.4 0.0059433 113410000.0 258030.0 220430.0 192270.0 189190.0 207470.0 264020.0 262250.0 206680.0 317860.0 239310.0 False True 256640.79514982802 227766.87929725123 219339.94475920097 213141.43460191233 233890.0747289668 245768.91883622913 249563.96560771237 222103.51109977436 239527.66210578394 224037.03091640107 1.1455284606302114 1.016648356593522 0.9790343313425145 0.951366984868879 1.04397953218833 1.0970013208572527 1.113940693584877 0.9913696418457348 1.0691431730103724 1.0 17.773377688433865 3.0153283745446546 24.982342750968336 1.055234036312952 1.0167977279750098 0.05439517792342441 0.05898540625313328 659.4448178180572 1074762.4770857152 0.017666897158795755 0.021109395800245935 1035.9251443375256 -3.0153283745446546 -0.038436308337942204 VLAEDEELYGDFEDLETGDVHK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLAEDEELYGDFEDLETGDVHK 22 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 ;; 238.69 1.4577e-30 171112000.0 257574.0 263986.0 252258.0 226649.0 250687.0 299249.0 280450.0 275710.0 415648.0 308153.0 False True 256187.25020316147 272772.6144270931 287773.73373415804 255342.7401611546 282610.5035117397 278562.62098637474 266883.56207696046 296284.8802270123 313217.11979785113 288486.4117169435 0.8880392274923741 0.9455301995115514 0.9975295960092404 0.8851118451003206 0.9796319411710487 0.9656004916435864 0.9251165782422388 1.0270323599078923 1.0857257294502067 1.0 18.138143841105627 1.6379422665310213 4.695858909738486 1.0466311796541066 0.9437164160526563 0.5606669414845968 0.039186158076398435 0.10790413714802882 5.327159002918026 0.0208368068428934 0.009742942383703733 43.4452465861801 -1.6379422665310213 -0.10291476360145024 VLAELYVSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLAELYVSDR 10 0 O43776;K7EIU7;O43776-2;K7EJ19;K7EQ35 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ; 175.91 6.1795000000000016e-06 289790000.0 233170.0 276920.0 259070.0 280440.0 268280.0 255640.0 272240.0 216750.0 327010.0 241580.0 False True 231914.63862762245 286137.11479832465 295544.80412319244 315943.6752458392 302443.8677798586 237968.20851183074 259070.7111422063 232924.98563419838 246422.7672095023 226162.15757295617 1.0254352059442597 1.2651856432083317 1.3067827407326293 1.3969785159301948 1.3372876834281844 1.052201708126463 1.1455086647669355 1.0299025625410416 1.0895844373522585 1.0 17.7869980260054 2.7308624360022407 24.725135009050323 1.0691450740396224 1.2757753493946105 0.5183196034102142 0.09750642593027273 423.8497534830408 1361323.790321347 0.0323628902106013 0.031043487330014233 538.0993110499129 -2.7308624360022407 0.206630275354988 VLAGDKNFITAEELR ddPTM_BT-474_Trastuzumab_2h_R1 4 VLAGDKNFITAEELR 15 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ;;; 228.51 5.3539e-13 7676780000.0 5797190.0 6174930.0 5820710.0 5528910.0 4738590.0 6532090.0 6516530.0 5513800.0 8336840.0 6771900.0 False True 5765978.573168359 6380458.812225983 6640215.373481709 6228869.43910809 5342021.348676611 6080541.993185908 6201300.548337949 5925267.7545090765 6282337.489932631 6339711.54428472 0.9095017230502255 1.0064273062988167 1.0474002369189643 0.9825162226384645 0.8426284557839967 0.9591196619454311 0.9781676193025614 0.9346273427614752 0.9909500528610309 1.0 22.59598576882178 3.456822703620718 24.995721522022333 0.9460234889498076 0.9938610261744107 0.09360701511549863 0.052055614771090546 439.1734666724625 540798.415505431 0.014350534040096357 0.01943300246195078 2863.0089365315416 -3.456822703620718 0.047837537224603155 VLAGDKNFITAEELRR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLAGDKNFITAEELRR 16 2 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 ; 208.43 8.3607e-12 1595030000.0 845860.0 1119890.0 1173190.0 1194340.0 1089410.0 1214170.0 1294900.0 1057330.0 1676170.0 1308490.0 False True 841305.9837438811 1157164.8616621986 1338364.9544497177 1345543.3215415624 1228139.9060610398 1130237.2857487486 1232260.7400016268 1136233.333612952 1263100.3630272835 1224981.0479453495 0.6867910202814946 0.9446389914383586 1.0925597230214672 1.098419705185179 1.0025786995815067 0.9226569567296459 1.005942697700089 0.9275517654079193 1.031118289663233 1.0 20.224327998350578 4.709203338813202 3.6096709301974714 1.0038123016662686 0.6600848276131815 0.7535262035202699 0.05514518290309797 0.13127749981669867 3.1102231839880914 0.014767572314217674 0.11597553370519617 51192.14635863741 -4.709203338813202 -0.343727474053087 VLAGETLSVNDPPDVLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLAGETLSVNDPPDVLDR 18 0 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EQR9;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 ; 244.44 8.8442e-24 327660000.0 253560.0 275160.0 255290.0 258070.0 278570.0 297360.0 267210.0 244735.0 314570.0 303260.0 False True 252194.8611331643 284318.53426226764 291232.61297954165 290741.63553948683 314044.23828625074 276804.2031101476 254284.03145867225 262998.36843914894 237048.4385220426 283905.6871660519 0.8883050693720678 1.0014541698700608 1.025807604936087 1.0240782368316443 1.106156912251537 0.974986467771071 0.8956637466369091 0.9263582250302912 0.834954878460736 1.0 18.115052223689606 2.3966299338061345 4.8994092323449046 0.9104492103012398 1.013158189022827 0.3369776170091463 0.06243013750575112 0.22231305031552606 9.57977241098519 0.02198147009670868 0.018289351416656427 249.2469965963138 -2.3966299338061345 0.10270897872158713 VLAMSGDPNYLHR ddPTM_BT-474_Trastuzumab_2h_R1 6 VLAMSGDPNYLHR 13 0 P30153;B3KQV6;E9PH38 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 ;;;;; 221.8 1.8525e-11 4465570000.0 2436480.0 2890500.0 2774290.0 2922990.0 2786220.0 2908600.0 3085780.0 2718140.0 3308600.0 2979160.0 False True 2423362.262398378 2986708.545155852 3164885.9174390403 3293040.2342990865 3141028.6017802213 2707535.3281079307 2936509.032575662 2920981.409235251 2493239.862968596 2789027.458212804 0.8688915038331165 1.0708781429745124 1.1347632695832564 1.1807127336097478 1.1262092786253808 0.9707811660781952 1.0528792120452493 1.0473118149604028 0.8939459723233606 1.0 21.411330707215836 2.735581947003033 24.945423205346106 1.0051307140797787 1.0850399405125946 0.17247668177685105 0.08824326649280459 508.7885847441608 4260929.760913707 0.029215950157583274 0.028703373555996645 543.9787653618667 -2.735581947003033 0.07990922643281584 VLATEDRS(ph)DHLIQTDTVNLHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLATEDRSDHLIQTDTVNLHR 21 1 P51151 P51151 RAB9A Ras-related protein Rab-9A 1 VLAT(0.139)EDRS(0.861)DHLIQTDTVNLHR 187.29 1.7710000000000002e-17 88728000.0 81423.0 74835.0 81834.0 68502.0 83726.0 73440.0 71103.0 63602.0 102450.0 64270.0 True False 80984.6276149458 77325.83773628726 93355.51588612089 77174.34617633173 94388.00981711822 68363.26565916472 67663.47625016276 68348.30420441195 77202.57025966646 60168.23357568466 1.3459698382714946 1.285160509806563 1.551574815117191 1.282642710114721 1.5687349321696316 1.136201972311048 1.1245714263000584 1.135953311948866 1.2831117962363743 1.0 15.876714382170503 2.7126785559866224 24.502782871160285 1.1425697281669067 1.4012014663512071 0.6005443219500666 0.11033508014709177 402.41590726938887 380970.23564829613 0.03354744891463918 0.03163901974483215 516.0342839817042 -2.7126785559866224 0.2586317381843004 VLATVTKPVGGDK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLATVTKPVGGDK 13 1 Q02878;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q02878 RPL6 60S ribosomal protein L6 0 ;; 171.36 6.7558e-07 0.0 7451100.0 6561000.0 6108500.0 5781300.0 5571900.0 7505400.0 7308900.0 7523100.0 9911700.0 7425000.0 False True 7410984.105495041 6779378.91879175 6968523.703966186 6513211.987229962 6281448.437761267 6986569.363811203 6955340.584290596 8084511.923527739 7469094.3449754715 6951130.143137687 1.0661552802045193 0.9752916114632822 1.0025022637283911 0.937000437786358 0.9036585862174448 1.0050983393985944 1.000605720374415 1.1630500015179477 1.0745151063455676 1.0 22.7288161254841 1.9105500417186252 6.991202802807926 1.0947626135451365 0.9787927762615668 0.37756947501988447 0.05509780469885737 0.22393194613685596 15.034749762096315 0.023676261055168533 0.014655040375405177 81.3860632724276 -1.9105500417186252 -0.11596983728356969 VLAVNQENEHLMEDYEK ddPTM_BT-474_Trastuzumab_2h_R1 8 VLAVNQENEHLMEDYEK 17 0 O43707;O43707-2;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 ;;;;;;; 352.97 9.500799999999995e-88 9425610000.0 9636160.0 7768860.0 7487410.0 6731810.0 6585990.0 8948270.0 8684770.0 8141700.0 10756750.0 8873600.0 False True 9584279.985238032 8027441.808724948 8541572.246265614 7584056.455771972 7424676.788278935 8329697.156861835 8264654.49605679 8749274.99671489 8105893.095565323 8307279.250928817 1.1537206943135367 0.9663141885867649 1.0282033368880192 0.912941075734756 0.8937555322278108 1.0026985858132205 0.994868987356208 1.0532058370057387 0.9757578685776118 1.0 22.985944621060725 4.742164757622679 24.746537325986036 0.9837103758703399 1.153720769213809 0.560546957427905 0.04585378976036534 256.7359890988161 1762695.8411075866 0.01206140643349738 0.08945916945382874 55228.691977356684 -4.742164757622679 0.170010393343469 VLDAPGGGSVLVMEHMDMR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLDAPGGGSVLVMEHMDMR 19 0 Q9HA64;I3L3W5;I3L139;I3L2G3 Q9HA64 FN3KRP Ketosamine-3-kinase 0 ;; 212.69 7.0184e-17 314600000.0 168207.0 194426.0 189000.0 175146.0 169845.0 184729.0 205899.0 165090.0 204135.0 190486.0 False True 167301.3922015545 200897.35187700085 215609.55718255063 197319.46564187593 191473.75399981398 171959.11903529186 195938.87875943718 177409.85411003375 153828.66451885802 178329.02039673037 0.9381613370014449 1.1265544521585016 1.2090547949115735 1.106491053463409 1.0737105692267046 0.9642800630695592 1.0987492575438926 0.9948456718673622 0.8626115041547014 1.0 17.444181973673413 2.001175044396028 0.9069045548791893 0.9439443039348343 1.0975876594534077 0.3045445350758452 0.08180481687370135 0.7066070737423603 1.0729364015802525 0.06907457958249141 0.033576827898514516 100.27093032563542 -2.001175044396028 0.15364335551857344 VLDDVSIRS(ph)PETK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLDDVSIRSPETK 13 1 Q12830-4;Q12830;F5GXF5;E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-2 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 1 VLDDVSIRS(1)PETK;VLDDVSIRS(1)PETK 197.47 8.0895e-08 680120000.0 1290930.0 1285500.0 1117470.0 1090570.0 1104220.0 1484000.0 1354500.0 1397870.0 2020370.0 1390440.0 True False 1283979.776315805 1328287.0903988385 1274800.0627766384 1228636.05018134 1244835.8717752914 1381414.5729602461 1288977.660307518 1502186.1576400315 1522476.885070984 1301700.928784425 0.9863861566994744 1.020424170426951 0.9793340655960755 0.9438696885072398 0.9563148064569362 1.0612380635314294 0.9902256592159089 1.1540178887656067 1.1696057453786468 1.0 20.31196659069897 1.7602530856092478 10.096614051581165 1.120507391881458 0.9912949421661894 0.5061785086658219 0.05239326403548668 0.1228521635413467 47.8701348947965 0.024012281724634998 0.013158039373777141 57.5775373351401 -1.7602530856092478 -0.12921244971526868 VLDEEGS(ph)ER ddPTM_BT-474_Trastuzumab_2h_R1 6 VLDEEGSER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER 197.73 2.8871e-05 11931940000.0 5976230.0 6420220.0 5348760.0 5375630.0 5569140.0 5557750.0 5525730.0 5207050.0 5508900.0 5537970.0 True False 5944054.64170158 6633913.141595048 6101818.91574465 6056184.2068242375 6278336.968121079 5173555.824036259 5258429.329561508 5595626.511864144 4151305.410478052 5184532.013305346 1.1464978182113699 1.2795587190068607 1.1769276185555846 1.1681255301890168 1.2109746746685415 0.997882896809024 1.0142534207651754 1.0792924988222243 0.8007097650905293 1.0 22.305782338004963 2.5521695756597627 0.9131427846871036 0.9566687338366825 1.2144866581757479 0.6553299444303491 0.07732606514337978 0.3655471827577216 0.6249100569387713 0.04990413067785805 0.038216272160705105 356.59034136236545 -2.5521695756597627 0.25781792433906536 VLDFEHFLPMLQTVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLDFEHFLPMLQTVAK 16 0 F8VPF3;P60660;F8W1R7;J3KND3;G3V1V0;B7Z6Z4;G3V1Y7;P60660-2;G8JLA2;F8VZU9;F8W180 F8VPF3;P60660;P60660-2 MYL6 Myosin light polypeptide 6 0 ; 252.17 1.5981e-26 2252000000.0 3318300.0 3270500.0 3302300.0 3170600.0 2773300.0 3620900.0 3893300.0 3034200.0 5063500.0 3872400.0 False True 3300434.6414977894 3379356.615441001 3767235.1358938464 3571997.6349110543 3126463.3163630594 3370595.7056817724 3704966.2051496883 3260627.41135541 3815668.272423824 3625260.1166715655 0.9103994017753392 0.9321694186577889 1.0391627123718314 0.985307955830377 0.8624107555718064 0.9297527893740198 1.021986308820042 0.8994188848299985 1.0525226189637054 1.0 21.789653083229346 1.2276291168780062 24.971844136990867 1.0262613268361307 0.9491480011533691 0.25918946730053494 0.05315747407786832 336.1949684203679 767976.1833928289 0.049302448897116484 0.012805441084494641 16.88997928322908 -1.2276291168780062 -0.07711332568276164 VLDGLHNELQTIGFQIETIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLDGLHNELQTIGFQIETIGK 21 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 ; 218.42 5.442e-25 815860000.0 611910.0 621000.0 541470.0 514060.0 526340.0 656040.0 593680.0 596110.0 750370.0 639470.0 False True 608615.5445495923 641669.6095975722 617704.2694583894 579139.9432922408 593366.279138404 610689.4989520484 564961.4303221606 640594.7551852459 565451.3679428588 598658.4771221897 1.016632300064082 1.07184585889795 1.0318141195089305 0.967396212405149 0.991159904710235 1.02009663654592 0.9437124035025544 1.0700504205079464 0.9445307960242028 1.0 19.191373682998307 3.9509983184288315 8.172162546677518 0.9967871044361932 1.0461421756776703 0.2616219044636052 0.03727789626435541 0.41174102739480817 64.33673980365171 0.009195360106796746 0.01682119267786289 8933.020248962606 -3.9509983184288315 0.04935507124147709 VLDILEDYCMWR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLDILEDYCMWR 12 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 104.82 0.004877 181370000.0 42573.0 45175.0 50332.0 50937.0 62032.0 69104.0 47232.0 50027.0 62279.0 56967.0 False True 42343.79169830498 46678.62256613583 57418.3081064134 57385.618977311744 69931.40750753021 64327.00313331856 44947.2077162382 53760.26877195867 46931.17494584452 53331.317288097525 0.7939761073135027 0.8752572585817895 1.076633974672664 1.076021030332192 1.3112634576370663 1.206176903259711 0.8427920029320091 1.0080431443600752 0.8799927947086095 1.0 15.702695342701332 4.355615258288948 3.8562943379995493 1.0527520769487293 0.8100843989997266 0.3095025205440056 0.1307916404844095 0.279834947058729 7.523350912275079 0.0355618775873812 0.11247371348808237 22678.54867866273 -4.355615258288948 -0.24266767794900268 VLDLDLFR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLDLDLFR 8 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ;; 125.58 0.0029213 260193000.0 342943.0 437301.0 497570.0 371337.0 223043.0 287200.0 399467.0 232463.0 551374.0 319807.0 False True 341096.6329925491 451856.299430963 567623.5310440299 418348.22612595966 251446.20397056433 267346.5399960796 380143.25509786856 249810.5694831959 415495.26573307347 299396.6434594524 1.139280083608366 1.5092229966571367 1.895891431798579 1.3973043294408778 0.8398430959852026 0.8929510261269399 1.2696977852036333 0.8343799936989875 1.3877752967839951 1.0 18.19169852184668 3.389233254960425 5.879594515643637 1.0275057770738645 1.5348828793513054 0.46217556778474544 0.23848691121024998 0.16879742453152877 8.981171322987192 0.06564200385728401 0.08943351163059879 2450.378961036776 -3.389233254960425 0.5073771022774409 VLDNYLTSPLPEEVDETS(ph)AEDEGVSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLDNYLTSPLPEEVDETSAEDEGVSQR 27 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 1 VLDNYLTSPLPEEVDET(0.153)S(0.847)AEDEGVSQR 136.01 1.1507e-05 24652000.0 20864.0 22943.0 20184.0 24131.0 24026.0 25492.0 24063.0 19900.0 26170.0 27140.0 True False 20751.670542208314 23706.64388566363 23025.73175752697 27185.982125792827 27085.568686741048 23729.798041713337 22898.980760413277 21385.039050152474 19720.754160033885 25407.901964276993 0.8167408143885612 0.9330421661337761 0.9062429392989902 1.069981384689526 1.0660293291757352 0.93395346357511 0.901254294534385 0.8416688272892195 0.7761661780559794 1.0 14.63298963055274 2.1370375701623137 2.8352203046056874 0.8580307371661713 0.9624865499610911 0.14811481882401 0.08678314496465489 0.42453110769254027 6.824365192194752 0.03979416971327016 0.02641187771027397 137.10003642140018 -2.1370375701623137 0.10445581279491978 VLDNYLTSPLPEEVDETSAEDEGVSQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLDNYLTSPLPEEVDETSAEDEGVSQR 27 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 ; 172.06 4.0063e-12 156187000.0 148597.0 172767.0 155415.0 164226.0 155583.0 175910.0 155178.0 150259.0 170711.0 167682.0 False True 147796.97026267886 178517.44515514316 177296.0811086034 185016.99476152885 175395.57283731105 163749.7557475987 147671.447302473 161472.08957974167 128641.5614602042 156980.39120021704 0.9414995664915538 1.1371958229321595 1.1294154623584494 1.1785993992431396 1.1173088020503579 1.0431223574844315 0.9406999573222419 1.0286131175058406 0.8194753527918737 1.0 17.26022483428628 2.4425333368870485 2.964753507296964 0.9570764245493796 1.108253963932264 0.45940501891679963 0.07786431651531209 0.24014268206294262 4.340072342746102 0.028691509356779648 0.024050332210823182 277.0341685253359 -2.4425333368870485 0.15117753938288436 VLDPFTIKPLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLDPFTIKPLDR 12 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 175.98 2.3927e-05 12184500000.0 21305100.0 24792600.0 27512300.0 19084800.0 10372700.0 17578200.0 24960300.0 17117100.0 39134000.0 20043100.0 False True 21190395.70881916 25617806.703556795 31385792.69880148 21500933.723191388 11693601.861190319 16363060.408631917 23752874.93139438 18394464.92087263 29489950.068733882 18763932.19823879 1.1293152994236528 1.3652685606038013 1.6726660684559176 1.1458650295703743 0.6231957000083329 0.8720485789310077 1.265879383939783 0.9803097094221626 1.5716295367717141 1.0 24.161458857120262 3.491575324992836 24.806620923371444 1.0387454887096044 1.390462497170855 0.2470767882730217 0.26256658276621064 818.3499097365915 1404480.833659167 0.07170161135481777 0.10663436862842948 3101.5252772696094 -3.491575324992836 0.35171700846125065 VLDPFTIKPLDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLDPFTIKPLDRK 13 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 ; 148.62 2.4384e-05 973170000.0 789090.0 900010.0 909660.0 797110.0 566480.0 784370.0 923710.0 803510.0 1788800.0 975980.0 False True 784841.6271161399 929966.2887824653 1037732.2210935394 898024.0442704699 638617.8702099838 730148.348108375 879026.618385128 863471.9963411071 1347974.20869196 913692.1208214831 0.8589782151240439 1.017811435154273 1.1357569989336607 0.9828519079961789 0.6989420786903741 0.7991185777676539 0.9620599744198428 0.9450360539004933 1.4753046217362826 1.0 19.80134858874562 1.3516101636803968 9.503147611048307 1.2366099854573451 0.9267739388602775 0.3926592358326342 0.15562070883562878 0.27092253753588214 21.112020717042572 0.1046296753444512 0.03824993259094068 22.47036689837935 -1.3516101636803968 -0.30983604659706765 VLDTSSLTQS(ph)APAS(ph)PTNK ddPTM_BT-474_Trastuzumab_2h_R1 4 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 2 VLDTSSLT(0.043)QS(0.957)APAS(0.999)PT(0.001)NK;VLDTSSLT(0.177)QS(0.823)APAS(0.987)PT(0.013)NK;VLDTSSLT(0.031)QS(0.969)APAS(1)PTNK;VLDTSSLT(0.009)QS(0.991)APAS(0.947)PT(0.053)NK 202.61 1.8627e-15 497124000.0 1253430.0 710070.0 609240.0 722220.0 591499.0 892240.0 721310.0 811720.0 1449580.0 1001950.0 True False 1246681.672149166 733704.2507036199 695015.6963909892 813652.9779491142 666822.8915607517 830561.5489070417 686417.4796282126 872294.6682306426 1092350.4323768415 938004.6931874476 1.3290782884175116 0.7821967800719724 0.7409511929297988 0.8674295383152381 0.7108950481844722 0.885455643174554 0.7317846964024106 0.9299470189925012 1.164546873070442 1.0 19.839235615537078 1.428116723265058 5.593737406692631 1.0774075581835634 0.850089869900618 0.19815519829091488 0.171654652333088 0.28044127380730455 16.132850385814574 0.10937007146834656 0.041535936742367 26.79888488937197 -1.428116723265058 -0.2273176882829454 VLDTSSLTQSAPAS(ph)PTNK ddPTM_BT-474_Trastuzumab_2h_R1 6 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 VLDTSSLTQSAPAS(0.929)PT(0.071)NK;VLDTSSLTQSAPAS(0.994)PT(0.006)NK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK 503.48 7.032999999999993e-267 3723700000.0 3646960.0 3796230.0 3515010.0 3308820.0 3479740.0 4268030.0 4381930.0 3942480.0 5353170.0 4281970.0 True False 3627325.1725753453 3922585.2206805013 4009892.8549853754 3727716.272739041 3922864.2629651353 3972991.13196194 4169959.3053018195 4236687.877107794 4033952.9823029614 4008691.008621046 0.9048652452320373 0.9785202232461004 1.0002998101778722 0.9299086072541526 0.9785898325734429 0.9910943805391011 1.0402296650786882 1.0568756404513147 1.0063018011684082 1.0 21.934699787633484 2.523831906752105 2.2667204350075596 1.0336028438862204 0.959471987756569 0.5290860420994226 0.029572967127687973 0.22466153835483307 2.313721307467411 0.011365644083396376 0.009780889078790548 334.0657151969204 -2.523831906752105 -0.07413085612965142 VLDWICR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLDWICR 7 0 Q16822;Q16822-3;H0YML5 Q16822 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial 0 107.43 0.0174 326120000.0 122650.0 159210.0 142440.0 144730.0 158020.0 214190.0 132120.0 109970.0 180710.0 149870.0 False True 121989.66602769602 164509.20860552246 162494.3138893254 163052.80316049897 178142.91034208017 199383.54944902624 125728.850852587 118176.51981634501 136176.44188993992 140305.16828983754 0.8694595324934432 1.1725099695948837 1.1581491677744207 1.16212970019515 1.2696817409753482 1.4210705983199894 0.8961099037553678 0.842282014674043 0.97057324081342 1.0 17.098208627576998 2.194191177121123 24.999945364892447 0.9057606003705313 1.1782488914340281 0.44711027257192515 0.1343780012540111 115.72225003047438 65202.9513679034 0.05153091682519869 0.038058288650881705 156.38358941910286 -2.194191177121123 0.2724882910634968 VLEALLPLKGLEER ddPTM_BT-474_Trastuzumab_2h_R1 2 VLEALLPLKGLEER 14 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 129.38 6.2245e-05 267100000.0 338080.0 529780.0 495180.0 594360.0 538050.0 592660.0 612000.0 509230.0 936460.0 680440.0 False True 336259.8148442195 547413.4070412278 564897.0398182818 669605.915058896 606567.4782277957 551690.8091715766 582395.221932965 547231.3284175448 705681.9809211056 637013.736646007 0.5278690167886935 0.8593431751149649 0.8867894164929114 1.0511640119167487 0.9522047066386411 0.86605794731575 0.9142584977827661 0.8590573435650181 1.1077971169611653 1.0 19.280964957714925 4.863346212279394 1.8030150107449068 0.944655875341133 0.290005725511289 0.738062537771873 0.0762623959022573 0.6516744055395075 1.6565124358552157 0.019757099433736935 0.8017314653239592 73003.92533984585 -4.863346212279394 -0.654650149829844 VLEDEEGSKDIELSDDPYDCIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLEDEEGSKDIELSDDPYDCIR 22 1 Q15024 Q15024 EXOSC7 Exosome complex component RRP42 0 105.32 0.00047664 57371000.0 151340.0 135650.0 103050.0 116100.0 104530.0 166570.0 138260.0 154000.0 222610.0 145310.0 False True 150525.20225545455 140165.02824784344 117558.54427334301 130798.24809599867 117841.27590214935 155055.40796360385 131571.83559550918 165492.26199615473 167750.74832117482 136036.19139385014 1.106508501253582 1.0303510177085122 0.8641710935069411 0.9614959574787959 0.866249449464348 1.1398099753814008 0.9671825875702752 1.2165311326382535 1.233133231696447 1.0 17.05363099501801 1.751343593793781 10.631498862821244 1.1669379671764377 0.9872702991996305 0.3318718077113315 0.10244858504291124 0.12168532420435378 68.25195159096491 0.04778634269603483 0.026079619922211784 56.408375642623675 -1.751343593793781 -0.17966766797680722 VLEDSDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VLEDSDLK 8 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;; 133.55 0.002128 1562540000.0 2437490.0 2593090.0 2261930.0 2009810.0 2170680.0 2592460.0 2529620.0 2512390.0 4596900.0 2447560.0 False True 2424366.8246705993 2679399.433093994 2580390.0829519904 2264251.7399295354 2447103.2313716407 2413249.342194419 2407252.616513182 2699877.2994579193 3464055.590304152 2291354.625338459 1.0580495912161536 1.1693517029029132 1.1261417392215478 0.9881716757811244 1.0679722834304515 1.0531976654805035 1.0505805561012205 1.17828871602933 1.5117937450613834 1.0 21.127769326362465 1.5242318096825895 5.184849886206895 1.2825890699809015 1.0765942637137638 0.2559529359555647 0.12409699613275182 0.16157464734968213 9.479917411414345 0.06697682831258985 0.02938832878301099 33.4373468093284 -1.5242318096825895 -0.20599480626713773 VLEDSDLKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLEDSDLKK 9 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ; 135.55 0.00034908 1720270000.0 5093100.0 5055600.0 4390900.0 3820300.0 4099700.0 5802800.0 5585400.0 5647600.0 11741200.0 5810100.0 False True 5065679.3154966 5223872.589825262 5009100.553613018 4303949.588295813 4621772.494174319 5401666.094321905 5315212.863699962 6069052.589931721 8847738.584019484 5439294.443723125 0.9313118397814129 0.9603952578543606 0.9209099829838141 0.7912698297225873 0.8497007363717521 0.9930821267738791 0.9771879273484907 1.115779381448145 1.6266335046872962 1.0 22.374988094226754 1.5660999174343815 3.3764899889375464 1.327706396922072 0.9147650770881087 0.5117944566463677 0.15349178505661343 0.1377774729320002 3.5832746105901543 0.0932266462879505 0.03762275294421206 36.821367822817756 -1.5660999174343815 -0.4129413198339632 VLEENQEHYHIVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLEENQEHYHIVQK 14 0 P57740;P57740-2;P57740-3 P57740 NUP107 Nuclear pore complex protein Nup107 0 204.35 7.962e-09 368370000.0 287420.0 291900.0 280430.0 300220.0 274040.0 331330.0 313300.0 54493.0 368360.0 234960.0 False True 285872.5626553643 301615.7150427237 319912.10645874415 338227.82121774956 308937.36963766377 308425.9369669259 298144.48207777384 58559.54436984722 277582.61377111496 219964.65164062343 1.2996295564908342 1.3712008397399285 1.4543796199646393 1.537646247681394 1.4044864360406566 1.402161368504017 1.3554199725003089 0.26622252226926607 1.2619419152156652 1.0 17.746912175458736 1.895292798616255 9.758253535832353 0.7702671145209722 1.4137660306301136 0.5271573507112142 0.24097668368905306 0.2571739731449224 22.381794229103736 0.09499140729890457 0.060276812145177584 78.57652140502526 -1.895292798616255 0.6434989161091415 VLEESSIENQDVSQERPHS(ph)NGELQDSGPLAQQLAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLEESSIENQDVSQERPHSNGELQDSGPLAQQLAGK 36 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 VLEES(0.001)SIENQDVS(0.03)QERPHS(0.969)NGELQDSGPLAQQLAGK 277.16 1.994e-76 91228000.0 107560.0 95541.0 88655.0 88107.0 100810.0 108550.0 110030.0 106220.0 127590.0 110640.0 True False 106980.90891103937 98721.02442924598 101136.85339692606 99261.33716618572 113647.55595231675 101046.19399921462 104707.42854458188 114146.6757742311 96147.15411840746 103578.86047633039 1.0328450073602269 0.9531001207703524 0.9764236923617984 0.9583165590904401 1.0972080155128492 0.9755484230520712 1.0108957374416123 1.102026757673354 0.9282507422484996 1.0 16.66037006628438 3.3310614817086566 21.919369329584924 1.026880519116662 0.9779691490922784 0.10334701893320775 0.05287102877581011 12.827361269107003 3029.134514099705 0.014237191616768929 0.019277229586576954 2143.193984900345 -3.3310614817086566 -0.048911370024383505 VLEGHTDFINGLVFDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLEGHTDFINGLVFDPK 17 0 Q8NFH4;F8VTY2 Q8NFH4 NUP37 Nucleoporin Nup37 0 92.977 0.0031758000000000003 201210000.0 162480.0 182870.0 162740.0 147860.0 165270.0 185770.0 197040.0 203530.0 262800.0 200140.0 False True 161605.22573322494 188956.71740275048 185652.3774385621 166579.06083957283 186316.15486796343 172928.15715554226 187508.42243410365 218718.44210439897 198036.4613395838 187366.89385152527 0.8625068303757302 1.0084850824953369 0.9908494164699032 0.8890527959094775 0.9943920776933278 0.9229386985118905 1.000755355333427 1.1673270427256885 1.0569447850083558 1.0 17.515506537916533 1.9654684034258223 7.199967888706165 1.091610551538529 0.9503017095895209 0.48819162457168763 0.0587512252642082 0.16259987631500075 27.402149315077324 0.023379802132254532 0.014936547123205354 92.35669929663665 -1.9654684034258223 -0.14130884194900817 VLEGHVFDVNCCR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLEGHVFDVNCCR 13 0 F5H3E9;F5H5D4;F5H103;F5H3I1;F5H0C4;Q9BRP4-3;Q9BRP4-2;Q9BRP4 F5H3E9 PAAF1 Proteasomal ATPase-associated factor 1 0 ; 137.88 5.5598e-05 456020000.0 325070.0 372250.0 334260.0 345390.0 307800.0 312500.0 320530.0 315730.0 441830.0 344820.0 False True 323319.85923867195 384640.1162201227 381320.9025599964 389116.3385863658 346996.50552646717 290897.6105458736 305024.73935649236 339291.37584445416 332946.91671867645 322813.2923847454 1.0015692255117017 1.1915250248174074 1.1812428780210162 1.2053913136965781 1.0749139323324364 0.9011326900354739 0.9448952275265923 1.051045244568397 1.031391595615751 1.0 18.30034045969045 2.993756721367904 7.521515233868795 0.9901529123151377 1.149848102373146 0.5660288988455551 0.06578811786557241 0.09820461409063616 39.50124461574545 0.020199722764173596 0.022900915464925908 985.7271564101336 -2.993756721367904 0.15969519005800825 VLEGMEVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLEGMEVVR 9 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 95.099 0.01925 101270000.0 82660.0 98190.0 83215.0 77938.0 85276.0 90030.0 82586.0 78236.0 106600.0 83802.0 False True 82214.96774438933 101458.19479289147 94930.9486822537 87804.94280883693 96135.39312954842 83806.43800782412 78590.99967084276 84074.36759435834 80329.8583668174 78453.6846134981 1.0479427212299994 1.293224088743888 1.210025369107019 1.119194633641591 1.2253776684060056 1.0682281963007392 1.001750269066662 1.0716433269966925 1.023914412211004 1.0 16.259553585172274 2.6055870405570647 4.708632285526195 1.0338497585257627 1.1834293786283012 0.5698292509975175 0.06396667920217229 0.1654454804636599 5.628751693052471 0.02027993673246091 0.018975168594464138 403.2617593769071 -2.6055870405570647 0.14957962010253856 VLELEGEKGEWGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLELEGEKGEWGFK 14 1 P61201;P61201-2;H0YKU5 P61201 COPS2 COP9 signalosome complex subunit 2 0 157.38 4.845e-06 482500000.0 469290.0 395780.0 361280.0 335200.0 390640.0 579900.0 500890.0 464010.0 680540.0 564410.0 False True 466763.3947830208 408953.29804593796 412145.0836979466 377636.2856311699 440385.6884953183 539812.877937767 476660.03711438284 498636.7823950379 512830.0357687982 528388.8705842878 0.8833709806697441 0.7739627399678592 0.780003339665728 0.7146938678204615 0.8334499702999869 1.0216204541568914 0.9021008269672606 0.9436928182148304 0.9705541965744192 1.0 19.011240553962597 2.91178806495675 5.327754001433262 0.9561601752659838 0.7849109086349 0.7505529757450835 0.04941602384465631 0.11217699661962088 5.1598920034021925 0.014997967713124682 0.016077767664407865 816.1839776253752 -2.91178806495675 -0.17124926663108386 VLELVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLELVLR 7 0 K7EIG1;A0A494C0R8;O75153;Q9Y5I4-2;Q9Y5I4 K7EIG1 CLUH;PCDHAC2 Clustered mitochondria protein homolog;Protocadherin alpha-C2 0 94.262 0.033338 15718000.0 46781.0 58509.0 51156.0 57233.0 48188.0 53940.0 55605.0 45828.0 64007.0 54272.0 False True 46529.13629385769 60456.43669556261 58358.320144076984 64478.69193176827 54324.456167346936 50211.25476110216 52915.17371827206 49247.91806986877 48233.33249985817 50808.31449540312 0.9157779933453098 1.1898925854159637 1.1485978372566747 1.2690578810206739 1.069204060533477 0.9882487789600857 1.0414668198264982 0.9692885615074767 0.9493196729488452 1.0 15.632776984809722 2.999144373170824 24.99953834054147 0.9943922880371926 1.140420709174116 0.3717051466749316 0.08629782275078468 32.64817287746641 953953.3395655641 0.02482833564412193 0.029336518785307637 998.0317858966422 -2.999144373170824 0.1460284211369235 VLELYVSDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLELYVSDR 9 0 K7ENF0 K7ENF0 NARS 0 ; 146.81 0.00021845 425260000.0 176190.0 213188.0 192222.0 197018.0 191882.0 191213.0 203787.0 166402.0 223401.0 219546.0 False True 175241.4126165492 220283.83370513274 219285.18677642438 221960.4585992895 216317.03532628148 177994.89537698595 193929.04426806065 178819.76221223504 168346.81697003188 205534.38631721266 0.85261359793144 1.0717614587622162 1.0669026760222464 1.0799188523944874 1.0524615330907567 0.8660102991344549 0.943535764223701 0.8700235781289295 0.8190688671929225 1.0 17.6490202543255 2.7405539807355788 24.978042344764276 0.8936821154727177 1.0327531892713457 0.39755905227981025 0.07644121847887288 164.20916146206764 2057648.3818293405 0.02335617369166548 0.02367280702264172 550.2423087586637 -2.7405539807355788 0.13907107379862804 VLEQLEDLDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VLEQLEDLDSR 11 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 ;;; 211.64 2.0111e-08 405084000.0 330068.0 411514.0 401224.0 400882.0 369057.0 415132.0 441067.0 365771.0 471404.0 452928.0 False True 328290.95056200196 425210.9947245338 457712.85169847455 451633.6200966421 416054.22137778153 386434.9019556149 419730.90417043585 393066.6893675033 355232.8006899736 424021.7472688306 0.7742313989236616 1.0028046850506214 1.079456076596665 1.0651190015740055 0.981209629123108 0.9113563265202397 0.9898806060631736 0.9269965323695962 0.8377702393286807 1.0 18.693778734207143 2.8576216175828755 5.94308333896529 0.9335647977880291 0.9929320640343279 0.0596518155192971 0.08829366604633254 0.6215669406504036 27.96494101996598 0.027711572745660936 0.029484236041249622 720.4794823429423 -2.8576216175828755 0.05936726624629873 VLEQLIVAHFPMQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLEQLIVAHFPMQSR 15 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 ; 163.02 1.5621e-06 715150000.0 777690.0 1070810.0 1033750.0 1027860.0 970580.0 979680.0 1017370.0 922800.0 1086730.0 948200.0 False True 773503.0034494809 1106451.263531686 1179293.0144839224 1157986.9706111397 1094177.6099216305 911957.0275186615 968155.9263691837 991664.021883452 818919.9529359428 887685.0642051373 0.8713709790105584 1.246445736385617 1.328503837720758 1.3045020326528076 1.2326191506910094 1.0273429894139967 1.0906524908539523 1.1171349635936714 0.9225343378614024 1.0 19.75968839774764 2.7391813093391737 24.981195486106564 1.0501005795391847 1.2127653825393823 0.28274893359476583 0.12858027543622202 77.24555157098453 3108947.7931446666 0.04114991108487653 0.04131121813300201 548.5059074739012 -2.7391813093391737 0.1626648030001976 VLESLDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLESLDR 7 0 A0A5F9ZHY7;Q8WY22 REV__Q96PE2 BRI3BP BRI3-binding protein 0 107.32 0.017459 75205000.0 46573.0 78287.0 86220.0 66709.0 98192.0 95655.0 76161.0 62320.0 85622.0 79218.0 False True 46322.25614274674 80892.73546950916 98359.02656232534 75154.35256017212 110696.16917041848 89042.59499764974 72476.80146672628 66970.63485454791 64521.605376019106 74162.23941805799 0.6246070305620732 1.0907536787489773 1.3262682914396406 1.013377604963107 1.4926217174540273 1.2006459850235927 0.9772736373044134 0.903028756683432 0.8700061632754383 1.0 16.17839718808338 2.103281153074014 4.868167788738449 0.9196622229439193 1.143280030760361 0.15460016760860074 0.21379698464026364 0.36541475335931833 14.31123820059965 0.08460381970289993 0.061219527096635015 126.84727825926916 -2.103281153074014 0.2236178078164417 VLFELTGLS(ph)GSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLFELTGLSGSK 12 0 Q9Y6Q5-2 Q9Y6Q5-2 AP1M2 AP-1 complex subunit mu-2 1 VLFELT(0.006)GLS(0.988)GS(0.006)K;VLFELT(0.01)GLS(0.97)GS(0.02)K 109.0 0.001726 125633000.0 472050.0 375300.0 380050.0 361460.0 330170.0 483300.0 431180.0 401790.0 647450.0 462940.0 True False 469508.5352496857 387791.6336263595 433557.7365461821 407220.79893867165 372215.19242908864 449890.608565826 410322.1761324434 431773.6100482801 487894.6228855154 433394.772857126 1.08332763718972 0.8947769052909179 1.0003760167386924 0.9396070844465793 0.8588363675345804 1.038061916621542 0.9467630941356813 0.996259385413999 1.125751055254088 1.0 18.725322227733237 1.4429609664249141 5.590625341344444 1.0640371859752307 0.9630773808362184 0.24081236726527844 0.06768768862236439 0.22694833580924675 14.321825659528196 0.04079670473200554 0.015971540388331994 27.73070855033372 -1.4429609664249141 -0.10095980513901226 VLFELTGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLFELTGR 8 0 Q9Y6Q5;K7EPR4;K7EJJ1 Q9Y6Q5 AP1M2 AP-1 complex subunit mu-2 0 122.18 0.0032608000000000003 121400000.0 89185.0 123930.0 108850.0 89217.0 88965.0 93276.0 94932.0 84411.0 121600.0 105620.0 False True 88704.83786938508 128054.93513273285 124175.13385883918 100511.86305237489 100294.16541313232 86828.0496680862 90339.77648454279 90710.17745037284 91633.3093565196 98879.24117416854 0.8971027367932366 1.2950638942219779 1.2558261206729306 1.0165112703012213 1.014309618704208 0.8781221279312303 0.9136374370573485 0.9173834302651404 0.9267193828390556 1.0 16.593380051205322 3.3597707145763978 2.235487486018074 0.9257949276543336 1.1602822152661776 0.42280787653216023 0.10657064217844893 0.2517898289676796 2.5615311682529183 0.03123958955477489 0.04614561769987055 2289.6585102377912 -3.3597707145763978 0.234487287611844 VLFYEEELVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLFYEEELVR 10 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 0 118.26 0.001973 8783600.0 10758.0 14347.0 11910.0 12904.0 12360.0 14372.0 10905.0 10819.0 13439.0 11577.0 False True 10700.080123326168 14824.531222055362 13586.824476424219 14537.645076923072 13933.972736540376 13378.497468048956 10377.483488854532 11626.368717768832 10127.138523373918 10838.145948431646 0.9872611214351237 1.367810628551332 1.2536115070853355 1.341340589626104 1.2856417327132155 1.2343898607478077 0.9574961933739438 1.0727267166439336 0.934397688641514 1.0 13.403830359508934 2.278361726033929 7.0553804071540105 1.003919797308153 1.2582464971043283 0.592403468229866 0.10262276044542089 0.1320812292279047 17.835129818925044 0.034452529978586346 0.028401195856286338 189.82863550903903 -2.278361726033929 0.2543266997961753 VLGAHILGPGAGEMVNEAALALEYGASCEDIAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLGAHILGPGAGEMVNEAALALEYGASCEDIAR 33 0 E9PEX6;P09622-2;P09622;P09622-3 E9PEX6 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial 0 273.68 1.545599999999999e-73 133860000.0 36008.0 44740.0 43224.0 38821.0 51415.0 75722.0 38686.0 31017.0 58186.0 45932.0 False True 35814.13692886488 46229.14385409889 49309.563490256965 43735.73461959322 57962.39548941938 70487.51637041495 36814.61038512855 33331.64604113464 43846.83995245438 43000.58043563634 0.8328756627476647 1.0750818567041227 1.1467185556730792 1.017096378153715 1.347944490567471 1.6392224397045363 0.8561421732488704 0.7751440958111194 1.0196801882264062 1.0 15.392068513456334 VLGDHLLLDPTHELPPYTPPPMLS(ph)PVR ddPTM_BT-474_Trastuzumab_2h_R1 4 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5;Q96PN7 Q05GC8;Q96PN7 BCAR2;TRERF1 Transcriptional-regulating factor 1 1 VLGDHLLLDPTHELPPYTPPPMLS(1)PVR;VLGDHLLLDPTHELPPY(0.003)T(0.239)PPPMLS(0.758)PVR;VLGDHLLLDPTHELPPYTPPPMLS(1)PVR;VLGDHLLLDPTHELPPY(0.019)T(0.099)PPPMLS(0.882)PVR 122.11 0.00015340000000000002 777336000.0 345921.0 399560.0 392820.0 381839.0 395054.0 445100.0 417727.0 280408.0 387171.0 378926.0 True False 344058.59977143625 412859.1130608795 448125.6415473523 430179.7782491654 445361.7852314906 414331.28465269844 397519.94913789484 301333.46884297265 291757.8948756009 354742.6182651298 0.9698823373804258 1.1638272138824726 1.2632416249812684 1.212653219827269 1.255450465493924 1.1679771849206821 1.1205869514127391 0.8494425347499694 0.8224495165042307 1.0 18.43641313841794 1.8271602871997248 3.848135330566065 0.8763631147491141 1.1791427222897646 0.6700193899353957 0.08830711134471644 0.1265579992018237 3.1592232458480667 0.04537016890008899 0.02437935360270961 67.16767062093068 -1.8271602871997248 0.3027796075406505 VLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVTR 46 0 F5H8H2;Q03426;A0A1B0GWC2 F5H8H2 MVK Mevalonate kinase 0 86.075 1.2933e-05 67204000.0 4081.5 3782.2 5050.9 4937.6 5800.1 3959.2 4520.9 3246.0 6188.2 4528.1 False True 4059.52565749728 3908.088240611817 5762.02281679018 5562.699653736466 6538.708355113906 3685.5098229543164 4302.206795484864 3488.2330028540187 4663.201027631702 4239.1127812985505 0.9576356815526247 0.9219118344416088 1.3592520685484386 1.3122320496583877 1.5424709585365004 0.8694059377739294 1.0148837781492066 0.8228686479498387 1.1000417465192427 1.0 12.049546634366177 2.6806044420060533 24.999988330166545 0.9445053163626775 1.215218784866197 0.3238754652933892 0.1850106124108163 333.10821225466873 143689.16600270217 0.06387667155342146 0.060223515124560034 479.29670348715234 -2.6806044420060533 0.2707134685035195 VLGQPHHELDSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLGQPHHELDSK 12 0 B4DHE8;Q96DH6-2;Q96DH6;J3QKT5;J3KTC1 B4DHE8 MSI2 RNA-binding protein Musashi homolog 2 0 182.23 9.9109e-06 161720000.0 252140.0 257940.0 234840.0 214600.0 256090.0 314840.0 251270.0 137240.0 350040.0 253080.0 False True 250782.5062553878 266525.37697197765 267903.43073412764 241768.3379965661 288701.5435356491 293075.8518536409 239115.11015538572 147481.54569059933 263777.3322956918 236928.21772731078 1.0584746243439116 1.1249203641869763 1.1307366986673886 1.0204286357939263 1.2185190362927816 1.2369816253416994 1.0092301898399958 0.6224735369441776 1.1133217259891037 1.0 17.85409050564873 1.995693014975022 24.018307886276382 0.8564512287381351 1.1296250187138395 0.33485234688051946 0.13333095963223615 91.30497866664176 509172.24005435803 0.04947991927903467 0.035614267515820155 99.01318137502516 -1.995693014975022 0.2731737899757044 VLGS(ph)EGEEEDEALS(ph)PAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLGSEGEEEDEALSPAK 17 0 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 2 VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK 351.02 1.6379e-87 1666400000.0 2134162.0 1508515.0 1304119.0 1248891.0 1262471.0 2209901.0 2156267.0 1854348.0 2816690.0 2174542.0 True False 2122671.9089196916 1558725.0098584273 1487727.6195944462 1407000.4725483204 1423239.1985981301 2057135.7454173982 2051960.1274701417 1992728.8639483491 2122554.491212297 2035760.8678409301 1.0426921660847803 0.7656719580780461 0.7307968450991434 0.6911423118377086 0.6991190473700268 1.0104996996032927 1.0079573489623033 0.9788619554622742 1.0426344885307761 1.0 20.957136673448122 2.727202146395354 24.713278009505128 1.0043862047097425 0.776437672986686 0.5811212712708647 0.09408916133654628 460.48465672181277 1001901.0077729028 0.031109764010903776 0.029575887970197116 533.5831989453218 -2.727202146395354 -0.2279485317230565 VLGS(ph)EGEEEDEALSPAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLGSEGEEEDEALSPAK 17 0 P18858;P18858-3;P18858-2;M0R0Q7;F5GZ28;B4E135;M0QY71;M0R1G7 P18858 LIG1 DNA ligase 1;DNA ligase 1 VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK 306.71 3.5466999999999996e-47 1759720000.0 1363640.0 1115280.0 1112190.0 1025100.0 973520.0 1467320.0 1474090.0 1366990.0 1808950.0 1532670.0 True False 1356298.3137546477 1152401.420599004 1268776.6846712206 1154877.5548941288 1097492.0014948857 1365887.6220997476 1402782.6351293512 1469001.7352345693 1363158.5111881262 1434853.6884151967 0.9452519965660654 0.8031490805671185 0.8842550950770395 0.8048747856443098 0.7648807752008996 0.9519351228126803 0.9776485550096273 1.0237989748328202 0.9500331094341345 1.0 20.45247220255999 2.559370642907189 5.247789022271873 0.990215528086012 0.8392062556554674 0.6723128166513177 0.0493819606309937 0.12608543032460728 5.917126102781009 0.016101065608300793 0.014991297267794109 362.55228189219656 -2.559370642907189 -0.15100927243054463 VLGSQEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLGSQEAK 8 0 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 0 67.169 0.05979 219160000.0 210140.0 421430.0 400980.0 395290.0 433710.0 261070.0 337170.0 334360.0 195730.0 358250.0 False True 209008.62958874909 435457.04279018525 457434.49861936056 445333.6734700031 488940.3976994275 243022.84539267575 320859.79898551904 359311.64104567753 147494.9641476284 335386.1782867442 0.6231879639656871 1.298375040422458 1.3639038464735689 1.3278235726496082 1.457843016063111 0.724606024714886 0.9566876030031101 1.07133705652735 0.43977651345406676 1.0 18.355463709170756 2.731022452685718 24.9752330081557 0.8716997561056427 1.2335279342759755 0.3229002506015175 0.2691951150624137 732.696643383517 2427544.3401257223 0.08637579672687469 0.08289393333810728 538.2976113632469 -2.731022452685718 0.36182817817033286 VLGTEDLYDYIDKYNIELDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLGTEDLYDYIDKYNIELDPR 21 1 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;P68400-2 P68400 CSNK2A1 Casein kinase II subunit alpha 0 ;; 160.67 1.9057000000000003e-11 1715575000.0 2740680.0 2832916.0 2511126.0 2368651.0 2491381.0 2823745.0 2860088.0 2740800.0 3864655.0 3054545.0 False True 2725924.483398177 2927207.896526113 2864670.7137015327 2668521.973736741 2808643.6027778857 2628546.1545307445 2721734.616842821 2945332.413500397 2912262.5589738567 2859601.3229724574 0.9532533299308563 1.0236419577129658 1.001772761359547 0.933179724145219 0.9821801312703259 0.9192002162729667 0.9517881373805182 1.02998008492975 1.0184155866687947 1.0 21.44738259413802 1.7290359929841235 9.172736825117179 1.0174781900901095 0.9675157417339163 0.3651137412769402 0.02996133453078941 0.11676776131291547 33.0421291560093 0.01517024774457841 0.008155194804062618 53.58410645241379 -1.7290359929841235 -0.049962448356193234 VLGTPVETIELTEDRR ddPTM_BT-474_Trastuzumab_2h_R1 4 VLGTPVETIELTEDRR 16 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 ;;; 296.49 1.7004999999999994e-45 1518690000.0 418859.0 493212.0 489213.0 476507.0 554633.0 466485.0 497137.0 463664.0 537401.0 507267.0 False True 416603.90968361014 509628.26326704974 558089.9380843763 536832.7373426363 625262.2249826532 434237.9899375738 473088.5840622357 498264.96211808536 404965.7243544659 474892.78576687194 0.8772588722544288 1.0731438306523984 1.17519144280778 1.13042933780462 1.3166387102995467 0.9143916331269436 0.9962008230937374 1.0492156904710004 0.8527518978847286 1.0 18.857242314403514 VLHDAQQQCR ddPTM_BT-474_Trastuzumab_2h_R1 4 VLHDAQQQCR 10 0 A1L0T0;M0R026 A1L0T0 ILVBL Acetolactate synthase-like protein 0 ;;; 147.75 2.6328000000000006e-05 760543000.0 286311.0 375341.0 440722.0 358675.0 364258.0 449352.0 386721.0 270726.0 442628.0 346682.0 False True 284769.53338814236 387833.9982865739 502771.8267757044 404083.2182242235 410644.09717368294 418289.3539008298 368013.827812317 290928.9488387731 333548.26031132863 324556.457950607 0.8774113914919552 1.1949662032163195 1.549104368313692 1.245032130236396 1.2652470382708492 1.288803053071548 1.133897720403159 0.8963893390870333 1.0277048942963571 1.0 18.308109937316157 1.9674924287293682 4.250434955850609 0.9698387074050645 1.2493857686379735 0.35879335992147043 0.15592669682495522 0.22729061785872776 9.035453638659076 0.07287317982073843 0.04438023357013318 92.78813137721826 -1.9674924287293682 0.27954706123290896 VLHEAEGHIVTCETNTGEVYR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLHEAEGHIVTCETNTGEVYR 21 0 P62318;P62318-2;H3BT13 P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 0 ;; 199.15 4.7241e-22 2248240000.0 383715.0 448400.0 405203.0 417020.0 352197.0 434059.0 390978.0 237179.0 473410.0 424654.0 False True 381649.1210747446 463324.72293647594 462252.06031238637 469814.6892419765 397047.20031483076 404053.5229949801 372064.90045899805 254878.5013505584 356744.44886899693 397552.2181554192 0.9599974635924243 1.165443687086519 1.1627455192104434 1.1817685018130295 0.9987296817436168 1.0163533355938144 0.9358893837527096 0.6411195553961571 0.8973524296361267 1.0 18.600784844081765 2.316223799798055 1.8367218948020767 0.8070648966013481 1.1071320520352608 0.4710785260079472 0.1107848995115266 0.24467836589117553 1.6774581893509677 0.05302165574547606 0.036457556857642945 207.12084049668348 -2.316223799798055 0.3000671554339127 VLHEEHVELLMEEFAFLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLHEEHVELLMEEFAFLK 18 0 P53004 P53004 BLVRA Biliverdin reductase A 0 ;; 139.65 7.683e-08 817862000.0 838665.0 775348.0 788774.0 673779.0 683783.0 857189.0 878471.0 278782.0 936128.0 692738.0 False True 834149.7208244406 801154.9894722359 899826.5230534875 759079.3523158834 770858.7119506298 797933.542035862 835976.0016448913 299586.12846631225 705431.7978725341 648526.8677571595 1.28622230210636 1.2353458727822946 1.387493052007873 1.1704670847964316 1.1886303409703565 1.2303785420570235 1.289038347071107 0.46194867685650315 1.0877449076430286 1.0 19.306806819425844 1.7662383898932401 24.999999999999996 0.7986620287311347 1.252886476466353 0.5556581930073423 0.16424222604887756 11.642169772888767 10522.162487589396 0.07057103644403612 0.039139193778229796 58.37654527984177 -1.7662383898932401 0.4542244477352183 VLHEEHVELLMEEFAFLKK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLHEEHVELLMEEFAFLKK 19 1 P53004 P53004 BLVRA Biliverdin reductase A 0 ;; 186.72 8.107300000000001e-15 1852054000.0 1783165.0 1933285.0 1838942.0 1737787.0 1754754.0 2145840.0 2378920.0 757165.0 3029320.0 1917288.0 False True 1773564.637768256 1997633.2225295366 2097849.049229595 1957790.656020683 1978211.5206581873 1997503.131564025 2263842.551243083 813668.4971059643 2282784.6768083232 1794925.0383671604 0.9880995583980845 1.112934066787981 1.1687669425671414 1.0907367239144878 1.1021137252939333 1.112861589685745 1.2612462932170672 0.4533161439689743 1.271799450123537 1.0 20.775492163214174 VLHGEQYLELYKPLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLHGEQYLELYKPLPR 16 1 P51659-3;P51659;P51659-2;A0A2R8YD50;A0A2R8Y7L2;E7ET17;E7EPL9;E7ER27 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 ; 258.36 6.3256999999999995e-27 2434300000.0 1993340.0 2498600.0 2296800.0 2153400.0 2389200.0 2596700.0 2760000.0 2510700.0 3502900.0 2419200.0 False True 1982608.0789208915 2581764.3905644054 2620169.4758565156 2426020.219206922 2693450.4581021294 2417196.240974305 2626488.2557761115 2698061.183076272 2639657.2314552073 2264804.58481868 0.8753991811084306 1.139950178426145 1.1569075289850168 1.0711830219123075 1.1892639551141526 1.0672868896403378 1.1596975180030324 1.1912997709214186 1.165512136962818 1.0 21.110955144242322 4.739084880228432 24.785734242697618 1.136051184078259 0.8753990911146825 0.6144279115057627 0.05933601223280767 22.638771427370994 1069978.5669167181 0.013235099515948192 0.07782513478361727 54838.41328081637 -4.739084880228432 -0.2606520929635765 VLHIDLWK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLHIDLWK 8 0 Q12996;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 ; 132.08 0.00097737 448310000.0 2094440.0 2119830.0 1962130.0 1789780.0 1703270.0 2054160.0 2275000.0 1850210.0 2843100.0 2254000.0 False True 2083163.7677541582 2190387.260085704 2238380.848860305 2016365.9644897203 1920171.3384277623 1912160.7541725175 2164949.5586560373 1988282.0653760105 2142456.100588165 2110147.7902535135 0.9872122594332061 1.0380255213415883 1.0607697049462992 0.9555567500072939 0.9099700728530832 0.9061738533218046 1.0259705830348214 0.9422477774114286 1.0153109229997441 1.0 21.00891261508083 3.7242640502121613 24.18157644885016 0.9606311154075549 1.0296047971143303 0.3228813906238448 0.04188574504506858 538.4544741308504 910756.7305401218 0.01121048049864169 0.017462711897508608 5299.855761678012 -3.7242640502121613 0.06897368170677542 VLHNAQEVEKEPGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLHNAQEVEKEPGQR 15 1 P49916-3;P49916;P49916-4;P49916-2;K7ERZ5 P49916-3 LIG3 DNA ligase 3 0 194.23 3.6186e-08 428890000.0 463090.0 431700.0 420150.0 437170.0 436450.0 495500.0 531460.0 473160.0 628660.0 535180.0 False True 460596.77489413624 446068.8735318389 479303.46799073316 492515.6771759497 492029.3204581752 461247.2512815378 505751.2494256422 508469.6018577966 473735.16661241476 501024.3542093495 0.919310151341823 0.8903137537810231 0.9566470451263924 0.9830174382504278 0.9820467135467515 0.9206084442929273 1.0094344619709197 1.0148600513845205 0.9455332113745271 1.0 18.934521207284615 4.077194746113835 3.840651796304126 0.9810983695356511 0.9051499942029843 0.5265774598538885 0.02778414517392312 0.16834420202514347 4.85627121673056 0.0074249591389299995 0.017411565978797162 11945.236320729908 -4.077194746113835 -0.07594837533266685 VLHNDSDILFPVSGVGSYS(ph)PADAPLGSLENGTGPEDHVLPDPGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLHNDSDILFPVSGVGSYSPADAPLGSLENGTGPEDHVLPDPGLR 45 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 1 VLHNDSDILFPVSGVGSYS(0.999)PADAPLGS(0.001)LENGT(0.001)GPEDHVLPDPGLR 178.12 5.9089e-28 50787000.0 10391.0 16545.0 17059.0 14885.0 15373.0 14047.0 13744.0 13503.0 12594.0 12995.0 True False 10335.056010548626 17095.69032333631 19460.758920513912 16769.43947380656 17330.660427090235 13075.963953081247 13079.15021282134 14510.662426844665 9490.377450954022 12165.64797442077 0.8495277877741402 1.4052428904141678 1.5996483673892 1.378425506727272 1.4245571188258372 1.0748267565011325 1.0750886627922558 1.192757053085415 0.7800963393736433 1.0 13.570525543606086 2.706884489895646 9.09443003904981 1.0531668988405456 1.3530540047850752 0.35259208770524686 0.2050977119243422 0.4862878953242398 134.31903383159434 0.06684194980737707 0.06350319731269302 509.19542139971884 -2.706884489895646 0.2998871059445296 VLHTLEVLDSHSFER ddPTM_BT-474_Trastuzumab_2h_R1 1 VLHTLEVLDSHSFER 15 0 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 0 223.72 7.1108e-13 37681000.0 18352.0 21981.0 18207.0 19509.0 19580.0 21110.0 20383.0 16642.0 22474.0 18147.0 False True 18253.19487109887 22712.62429720491 20770.38734191904 21978.837399697164 22073.396940247618 19650.71538759486 19396.996419378447 17883.910546363706 16935.583836171252 16988.84292357166 1.074422487347443 1.336914138260212 1.2225898747407078 1.2937218560777903 1.2992878349367305 1.156683564383888 1.1417491177380612 1.0526856141303278 0.9968650550458317 1.0 14.052299976316995 1.9567148275902482 1.2515322019947799 0.9974945945457866 1.249589870640623 0.6688999290084536 0.06900946307865595 0.25074879988586385 0.7265098529633781 0.04913804875051519 0.022161343375318467 90.51380615320355 -1.9567148275902482 0.2520952760948364 VLIAAHGNSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLIAAHGNSLR 11 0 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 ; 186.87 3.8374e-06 5804300000.0 2392700.0 3076800.0 3542300.0 2793400.0 2153400.0 2856700.0 3013500.0 2091910.0 3682800.0 2818200.0 False True 2379817.9690539613 3179209.4280351256 4041025.049776443 3147044.1535862433 2427622.725798223 2659223.0529484693 2867725.4923120746 2248018.9467037446 2775223.286991702 2638340.0632175906 0.9020133538629784 1.2050036583070027 1.5316543557498066 1.192812176663937 0.9201326090002261 1.0079152001752991 1.08694308678872 0.8520580716809382 1.0518823277114533 1.0 21.33119909900019 3.3119022564743963 6.065614661335548 0.9787453361357981 1.2346596213929655 0.32622709279513407 0.15438008955675822 0.22518151070795034 14.139361112450093 0.04420713133685275 0.05978604432727336 2050.7005904982548 -3.3119022564743963 0.2559142852571674 VLIGGDETPEGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLIGGDETPEGQR 13 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 91.549 0.015077000000000004 42358000.0 60672.0 62298.0 58322.0 44834.0 47583.0 64260.0 57582.0 57499.0 94803.0 67825.0 False True 60345.348693292864 64371.551270063734 66533.23065608839 50509.9798030664 53642.41300346287 59817.857451769116 54796.538675398624 61789.86735400588 71440.07094511618 63496.35043209609 0.9503750732544392 1.0137834825468213 1.0478276342392305 0.7954784717443327 0.8448109637549773 0.9420676471120839 0.8629872158400478 0.9731247061212573 1.1251051510671501 1.0 15.954386052303114 1.4398058880746623 5.781266312105347 1.0610635601611789 0.9235693733834581 0.3435884110389451 0.07669161361420287 0.21511073117769894 14.467529546895717 0.052319674130607834 0.020461385260030666 27.52997950478307 -1.4398058880746623 -0.13749418677772074 VLISDSLDPCCR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLISDSLDPCCR 12 0 A0A286YFA2;A0A286YF22;O43175;A0A2C9F2M7;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2;A0A286YF34;A0A286YFF3;A0A286YFK5 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 155.06 0.00016754 222630000.0 159180.0 206530.0 165760.0 179470.0 174900.0 190390.0 155180.0 156440.0 205770.0 185450.0 False True 158322.99256656054 213404.2261999786 189097.5671882517 202190.88359852656 197172.47828648175 177228.7874298527 147673.35055483226 168114.34718622384 155060.7406767357 173614.42222826704 0.9119230449553238 1.2291848998546688 1.0891812141022912 1.1645972782876723 1.135691814976297 1.020818346512904 0.8505822768610338 0.9683201719566147 0.8931328324375202 1.0 17.405527272524257 2.493867410186152 4.435073841478062 0.9270768848272348 1.1135452892819186 0.492614921010056 0.08487692665360948 0.1532717723349536 7.436050691606871 0.0272717094339101 0.024168088808054947 311.7937534534599 -2.493867410186152 0.18646840445468382 VLISSLQDCLHGIESK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLISSLQDCLHGIESK 16 0 Q16630-2;F8WJN3;Q16630-3;Q16630 Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 ; 230.82 1.9036999999999998e-15 762570000.0 754040.0 851640.0 720340.0 785280.0 697290.0 953540.0 856390.0 844200.0 999800.0 896190.0 False True 749980.3324217205 879986.3225727491 821757.6106924784 884696.3674834286 786085.7483383684 887624.0241917205 814963.1439725031 907198.4907607408 753412.6866336217 838994.3869331396 0.8939038736161261 1.0488584146426192 0.9794554331839233 1.0544723317129068 0.9369380303148708 1.0579618147820293 0.9713570873239328 1.0812926819175923 0.8979949071979453 1.0 19.678301633170072 4.752011609397168 24.14245000999609 1.0080613829179244 0.8939037512351101 0.2529790988226184 0.05574486909364987 1731.9373903021262 3108472.263828315 0.011948799632662814 0.22463601351387316 56495.20766974293 -4.752011609397168 -0.11415763168281423 VLKGDVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLKGDVEK 8 1 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 ; 96.89 0.0078619 1607830000.0 2834300.0 2809900.0 2535700.0 2277400.0 2523500.0 3273400.0 3316600.0 2951800.0 4686900.0 3341100.0 False True 2819040.443720333 2903425.822879582 2892704.519300494 2565718.606492916 2844852.76704366 3047117.5627547605 3156163.3873576336 3172078.304936685 3531876.2962423675 3127868.137540377 0.9012657566623338 0.9282443169623874 0.9248166457474751 0.820277100463221 0.9095181260680418 0.9741835105462229 1.0090461773236727 1.0141342810669356 1.1291640634888416 1.0 21.576748263131055 2.3625323725180474 1.4935824105024569 1.047754970345778 0.8951798625182569 0.7125694608442577 0.04272528933667498 0.22386230470787585 1.0048481624723125 0.022816565555242613 0.015415560862315176 230.42647306476908 -2.3625323725180474 -0.15257510782752115 VLKPNFAAAWEEVGDTFEKEETFALSSTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLKPNFAAAWEEVGDTFEKEETFALSSTK 29 2 Q9UBF2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 337.75 1.1345999999999992e-105 194590000.0 241750.0 205640.0 208620.0 184490.0 175780.0 263190.0 248690.0 270730.0 406900.0 268610.0 False True 240448.44486094973 212484.60308799494 237991.88264245354 207846.41508381415 198164.541070313 244996.29478261937 236659.91461194257 290933.2473390844 306624.94718065695 251467.0798314091 0.9561825946448077 0.8449798010556724 0.9464136729229539 0.8265352873352666 0.7880337307100727 0.9742678641946774 0.9411168840494204 1.1569436744329897 1.2193442870781628 1.0 17.940010020103408 1.9089318654856842 2.310627876249217 1.143705459726326 0.881401884765244 0.6489449717863784 0.07696349799860384 0.16495632317393413 1.6112790713659724 0.04302887878724111 0.021552662821464525 81.0833839788624 -1.9089318654856842 -0.26230357496108214 VLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIR 38 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;; 272.82 1.5557999999999995e-76 3272490000.0 581215.0 668404.0 664186.0 776611.0 604179.0 741243.0 737039.0 566869.0 765057.0 717447.0 False True 578085.8030190568 690651.4230812492 757697.6155917965 874929.8729722804 681117.614400504 690002.6161083359 701385.6078075977 609171.6432824567 576518.9535885765 671658.9182227211 0.8606835811079998 1.02827700837917 1.1280987939484861 1.3026401484959587 1.0140825885299218 1.0273110315190248 1.0442586092112593 0.9069657630607926 0.8583507758880136 1.0 19.35736926412132 1.809948480241117 3.2849420434562804 0.9103932369143637 1.0690308258448566 0.24263288502693203 0.10901624104311236 0.3278280206104904 6.420974848186436 0.061916513211311336 0.03157589291691044 64.55776405016732 -1.809948480241117 0.15863758893049296 VLLEAGEGLVTITPTTGSDGRPDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLLEAGEGLVTITPTTGSDGRPDAR 25 1 G3V1D3;G3V180;Q9NY33-4;Q9NY33 G3V1D3 DPP3 Dipeptidyl peptidase 3 0 136.56 2.6027e-05 88550000.0 65285.0 81825.0 75370.0 70726.0 66586.0 63977.0 72724.0 72599.0 86445.0 83386.0 False True 64933.512813845366 84548.49566074296 85981.44087221594 79679.90434829987 75065.33241385735 59554.42057565873 69206.06228734132 78016.70603025221 65141.78805365411 78064.23408965362 0.8317959379358266 1.083063154935235 1.1014191309873063 1.0206966772618395 0.9615841785835989 0.7628899619672549 0.8865271413264743 0.9993911672873544 0.8344639361841608 1.0 16.252374094113208 2.996850072719986 12.361229109823402 0.9001298015620103 1.0173839866090915 0.23962422865177502 0.09433360844577987 0.31302752416808793 1163.811062148828 0.028198699743513255 0.0324375746952287 992.7732637524277 -2.996850072719986 0.11725418504708118 VLLESEQFLTELTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLLESEQFLTELTR 14 0 P37108;H0YLA2 P37108 SRP14 Signal recognition particle 14 kDa protein 0 ; 173.11 6.401e-06 234080000.0 87357.0 96459.0 115128.0 104893.0 115267.0 114727.0 122886.0 103871.0 116350.0 129811.0 False True 86886.67961827522 99669.57950430326 131337.0216894849 118172.44304507833 129945.56920896431 106796.19252830863 116941.53470989253 111622.38146625055 87677.10151012386 121526.35084321162 0.7149616442476159 0.8201478840823001 1.0807287537081618 0.9724018060703529 1.069278953143379 0.878790416953215 0.9622730699843507 0.9185035236535756 0.7214657636123816 1.0 16.890909645131675 4.452780217412954 8.325523621571843 0.9492981145602484 0.7405515204328506 0.3844917071618259 0.09666159995422861 0.1710721441635634 50.51244861029391 0.023467164790611204 0.06632927792995641 28364.832114676163 -4.452780217412954 -0.20874659412739782 VLLGFSSDES(ph)DVEASPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLLGFSSDESDVEASPR 17 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 1 VLLGFSSDES(1)DVEASPR;VLLGFSS(0.001)DES(0.999)DVEASPR 303.07 1.6099000000000002e-46 71742000.0 35570.0 42940.0 45743.0 47398.0 59376.0 71356.0 39865.0 39533.0 56463.0 50270.0 True False 35378.49507219853 44369.231942221835 52183.21679471643 53398.58194017358 66937.18165087565 66423.32767395634 37936.57765091116 42483.15320450646 42548.45021543724 47061.72556168769 0.7517466614313795 0.942788038744211 1.1088249776629115 1.1346498944281092 1.4223273977307858 1.4114086740591314 0.8061025641991082 0.9027113370252496 0.9040988129444059 1.0 15.522266598829251 2.2005035389415357 24.9999819263835 0.892754760971451 1.1329018925287104 0.2508062022120089 0.19041451555153452 247.81749439893957 162791.79047050522 0.0788361678812306 0.058225539249340603 158.67318487229645 -2.2005035389415357 0.24014713155725942 VLLRPGDFQSQWDEDDNEDESSSASDVMSHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLLRPGDFQSQWDEDDNEDESSSASDVMSHK 31 1 Q6WKZ4;E7EX40;Q6WKZ4-3;Q6WKZ4-2 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 0 121.96 4.9122e-06 161750000.0 23181.0 34543.0 29172.0 30780.0 32967.0 31505.0 26508.0 28359.0 29934.0 27553.0 False True 23056.19607165122 35692.742873315554 33279.164032430475 34676.74484405551 37165.1520392821 29327.133504792822 25225.70676960625 30475.292584084124 22557.166795049834 25794.543950689917 0.8938400351534241 1.3837322707293258 1.2901629156944396 1.3443441725639822 1.4408144648856276 1.1369510374308602 0.9779473836726448 1.1814627404284468 0.8744937238732032 1.0 14.654778319318027 2.4971414139506933 8.887422082519468 1.0410060503678982 1.2828858636611873 0.37800775432700795 0.1560174922244046 0.29498848903028824 120.5574573301158 0.05032759931228602 0.04576555625522613 314.15314654592265 -2.4971414139506933 0.24187981329328911 VLLS(ph)LLSIKMPITDADQIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLLSLLSIKMPITDADQIR 19 1 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 VLLS(0.497)LLS(0.497)IKMPIT(0.005)DADQIR 47.392 0.084589 90200000.0 275250.0 263190.0 254850.0 200370.0 173560.0 336830.0 322810.0 301280.0 402260.0 409850.0 True False 273768.08458315 271950.12004828546 290730.6648040899 225736.821455601 195661.83722928402 313545.73491253314 307194.44704604585 323763.0434688412 303128.4130078424 383693.02210976166 0.713508114059041 0.7087700437004291 0.7577168414621874 0.5883266268809686 0.5099436944498609 0.8171786215670043 0.8006255765531433 0.8438074836196094 0.7900284746933124 1.0 18.549593002580067 2.5624102743249635 9.853861869774834 0.8394845710401132 0.6605153717938798 0.5669412392768511 0.08497670066227127 0.3999576765084592 44.209051683046006 0.02808468451048675 0.026458474218592418 365.09868970732094 -2.5624102743249635 -0.17896919924623345 VLLSLEHGLWAPNLHFHS(ph)PNPEIPALLDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLLSLEHGLWAPNLHFHSPNPEIPALLDGR 30 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 VLLSLEHGLWAPNLHFHS(1)PNPEIPALLDGR 123.42 7.371699999999998e-06 247410000.0 77057.0 87043.0 71792.0 102580.0 104500.0 96601.0 83757.0 10994.0 106390.0 52530.0 True False 76642.13367383758 89940.17363639538 81899.68957274946 115566.61748223568 117807.45557997334 89923.20024429417 79705.35392718835 11814.428106400826 80171.61005296157 49177.49042680434 1.5584799673320369 1.8288890477293087 1.665389772067543 2.3499901373423024 2.3955564742637216 1.828543902176864 1.6207690395633672 0.24024056542668426 1.6302501277955368 1.0 15.585710494288598 1.9520344003983647 6.981156739285288 0.8811760149887164 1.9421933073938604 0.5424409385959879 0.40103379940111694 0.16926704780506735 20.416528395265907 0.17198487726578635 0.10803735414528297 89.54356900623375 -1.9520344003983647 1.061017292405144 VLLSLEHGLWAPNLHFHSPNPEIPALLDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLLSLEHGLWAPNLHFHSPNPEIPALLDGR 30 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 186.71 1.4476e-18 13186000000.0 2498300.0 3623600.0 3825900.0 3643900.0 3545500.0 4167900.0 3702300.0 190936.0 3869800.0 1754200.0 False True 2484849.4303872255 3744209.3354875394 4364553.464681062 4105217.3663825155 3996998.409175071 3879782.8831812674 3523205.604840542 205184.61387336266 2916139.6426633243 1642245.4541538209 1.5130804132245643 2.279932835872437 2.657674255478412 2.4997587029386903 2.433861758645911 2.362486602333361 2.145358719629338 0.12494150210882182 1.775702673000174 1.0 20.647238341400712 1.868232594159927 7.270024368021312 0.9075427287232282 2.3157370428283275 0.61949843834593 0.46811124963884476 0.1486775315408484 8.064835245966549 0.19452703865192436 0.12031601800422041 73.82995337542236 -1.868232594159927 1.4081943141050992 VLMATNRPDTLDPALMRPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLMATNRPDTLDPALMRPGR 20 2 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 ; 143.52 9.3963e-08 2443900000.0 1518670.0 1832750.0 1657240.0 1837490.0 1662970.0 1722270.0 1794240.0 1628280.0 1900800.0 1705720.0 False True 1510493.6494600982 1893751.9758292288 1890564.9870116925 2070116.0455979041 1874739.3723045767 1603213.5286874934 1707445.7565375848 1749790.5218383037 1432373.3094150706 1596859.489259639 0.9459151914238972 1.185922736825918 1.1839269514490758 1.2963670626760553 1.1740164898126213 1.0039790848666343 1.0692523468857098 1.0957698743109632 0.8969939553536861 1.0 20.606805942144295 2.7438514252365263 24.104340918126695 1.030071608158691 1.1680367901896462 0.35253992626558506 0.09568751428759041 328.4062714746891 1496182.346557142 0.030162865368566244 0.031139345236776476 554.4360046060619 -2.7438514252365263 0.1379651820309553 VLNEAVGALMYHTITLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLNEAVGALMYHTITLTR 18 0 Q13363-2;Q13363;E9PGB1;E7ESU7;D6RAX2;E7EPF8 Q13363-2 CTBP1 C-terminal-binding protein 1 0 ; 195.78 2.0254e-15 754360000.0 216690.0 273800.0 259760.0 264710.0 264720.0 288520.0 276390.0 241130.0 299250.0 268690.0 False True 215523.36511652204 282913.2674844051 296331.9501256048 298222.25885867194 298430.52288163203 268575.29150302574 263019.9597876669 259124.34503333 225503.84724456005 251541.97416291753 0.8568087526296223 1.1247159382678977 1.1780616380695093 1.1855765219745025 1.1864044713600996 1.067715606497849 1.045630498301311 1.0301435611119978 0.896485956250414 1.0 17.9404396333702 1.7722140687574903 1.504228429807433 0.9556275198293507 1.11231442988033 0.263986723500085 0.0949822374796977 0.5028865115762317 2.182721752656504 0.07426116317970814 0.029762770901745263 59.18532936008312 -1.7722140687574903 0.15668691005097934 VLNEECDQNWYK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLNEECDQNWYK 12 0 P62993;J3KT38;P62993-2;J3QRL5 P62993 GRB2 Growth factor receptor-bound protein 2 0 168.94 0.00010511 107630000.0 56059.0 67353.0 59702.0 52208.0 52136.0 73121.0 62160.0 56130.0 74340.0 71508.0 False True 55757.18457274039 69594.80388925174 68107.52266091328 58817.52744699318 58775.2105657176 68066.31737831945 59153.08332574032 60318.70562236473 56019.9031049645 66944.29821892113 0.83288922367075 1.03959270230398 1.017376004722436 0.8786039888662094 0.8779718680971306 1.0167604887832133 0.8836164527753806 0.9010282761514745 0.836813658450318 1.0 16.030673563081315 3.729674837642162 24.82292360447981 0.9098889212040638 0.9709166506294977 0.08424003181423478 0.07319438285322295 1177.4308866352649 3289221.187274392 0.018819749510787534 0.029662643444294676 5366.298636320701 -3.729674837642162 0.061027729425433885 VLNNMEIGTSLFDEEGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLNNMEIGTSLFDEEGAK 18 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ; 206.63 1.9349e-15 103481000.0 176923.0 163312.0 140369.0 129029.0 144820.0 189796.0 185415.0 154354.0 240380.0 218876.0 False True 175970.4662259934 168747.7411958111 160131.73509077993 145364.0581703587 163261.96858460983 176675.849251727 176445.76809591593 165872.6792737305 181141.56992697553 204907.14629082882 0.858781498895285 0.8235327281182475 0.7814843844611536 0.7094142922865198 0.7967607354840072 0.8622239509449193 0.8611010952516166 0.8095016805236459 0.8840178256637163 1.0 17.64461077473792 0.4677724926208439 0.5300356306202676 1.009577808117319 0.7973252075968942 0.6477516421696841 0.042946056347179254 1.3123686424403973 0.6454741490537305 0.0732913943233397 0.0226099259452935 2.9361111522206027 -0.4677724926208439 -0.21225260052042483 VLNNVVIHLLGDEDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLNNVVIHLLGDEDPR 16 0 P42858 P42858 HTT Huntingtin 0 96.993 0.0032246 66752000.0 97353.0 100750.0 97426.0 105300.0 108800.0 116630.0 111440.0 95610.0 118140.0 111610.0 False True 96828.8622649351 104103.40284533877 111142.73395802734 118630.9692033478 122655.03509187637 108567.6426174889 106049.22145785888 102744.90369774257 89025.97999489495 104486.9542458717 0.9267076733530188 0.996329193406955 1.063699624131963 1.1353663245288341 1.17387893997994 1.0390545250463976 1.0149517920515794 0.9833275784455363 0.8520296207065714 1.0 16.67296329980813 1.722238751890495 2.0581241538404944 0.9272679284422963 1.060500559817731 0.31994278844606017 0.07305889121676516 0.3559606236786255 3.1128014994448683 0.05445228278733352 0.022420988623024177 52.751978390166045 -1.722238751890495 0.13323263137543473 VLNSYWVGEDSTYK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLNSYWVGEDSTYK 14 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 270.21 4.6172999999999996e-26 314650000.0 367210.0 394590.0 328470.0 349570.0 371630.0 419020.0 383150.0 430510.0 561300.0 406510.0 False True 365232.9821608662 407723.68961530837 374715.72088757897 393825.5261577808 418954.8776764164 390054.13366698276 364615.5707248614 462636.8422854852 422975.13603465835 380566.1837692795 0.9597095005747827 1.071360796109234 0.9846269502356851 1.0348410945428084 1.1008725828630384 1.0249311428664807 0.9580871508696941 1.2156541017474152 1.111436470380378 1.0 18.53778784720002 1.7458390823595793 24.99999999999851 1.1283813395582052 1.0238426759631358 0.26858341605444647 0.0653252602113274 1.6664853828870982 5740.510091049593 0.028651953590648746 0.015888926589155646 55.69793350563521 -1.7458390823595793 -0.10453866359506936 VLNTGS(ph)DVEEAVADALK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLNTGSDVEEAVADALK 17 0 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 VLNT(0.002)GS(0.998)DVEEAVADALK;VLNT(0.02)GS(0.98)DVEEAVADALK;VLNT(0.044)GS(0.956)DVEEAVADALK 229.97 9.8594e-16 133266000.0 154755.0 129193.0 122946.0 115134.0 125391.0 164753.0 158472.0 140554.0 194134.0 162921.0 True False 153921.81627489696 133493.1109061823 140255.7281342109 129709.95259504492 141358.80059931526 153364.0128968458 150806.1039381712 151042.85319875035 146292.2769623239 152523.24229631445 1.009169579386894 0.8752312689946534 0.9195695424683482 0.8504274538240603 0.9268017022919728 1.0055124097014534 0.9887417921866146 0.9902940097831905 0.9591474372024865 1.0 17.218669579346074 2.8474683917005112 5.049556625863986 0.9881059627273177 0.9089596353928495 0.4489104593840675 0.0401133179921005 0.19506277188779714 7.50344171674478 0.01193396373198229 0.012700682346099631 703.8310006895551 -2.8474683917005112 -0.07914632733446814 VLNTNIDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VLNTNIDGR 9 0 P62269;A0A0G2JQH2;Q5GGW2 P62269 RPS18 40S ribosomal protein S18 0 ;;; 170.5 0.00013414 903800000.0 753480.0 976950.0 943730.0 911260.0 796740.0 873790.0 898720.0 829170.0 1042690.0 900610.0 False True 749423.3473994972 1009467.190171253 1076598.980951789 1026625.4225664061 898200.1163520383 813386.9539804129 855245.4801561991 891046.8758399459 785733.0208301771 843132.2987489878 0.8888561718148706 1.1972820774024047 1.276903971712638 1.2176326587057327 1.0653133768979772 0.9647204302187093 1.0143668810045403 1.056829251070149 0.9319213864728253 1.0 19.685399501539546 3.0328801815843556 5.527875497928933 1.004466575062858 1.1576082150603653 0.32934683431750944 0.10070421303739789 0.21505893424987732 17.721178797522334 0.03025886929794148 0.035757754741199986 1078.6490904143159 -3.0328801815843556 0.15314163999750718 VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR 32 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 288.16 1.0786999999999993e-74 228000000.0 25393.0 41302.0 45691.0 56248.0 48415.0 46007.0 54234.0 38360.0 50999.0 44742.0 False True 25256.286909427527 42676.71210241378 52123.895646708566 63368.991032762635 54580.36327181249 42826.64437882882 51610.49422600067 41222.61798813311 38430.97980158837 41886.5272544466 0.6029692257847985 1.0188648928369515 1.2444071892156012 1.5128728779021778 1.303052958777296 1.022444379756558 1.2321502308483163 0.984149813559848 0.9175021736257356 1.0 15.354198657153917 -0.950839161253688 6.884408920238437 1.0000000025945537 1.109041205710626 0.009826208165779171 0.23626786673897934 2.471108418249928e-08 4.102202460107288e-09 0.2369046698359369 0.05583896285032259 0.11198525383556729 0.950839161253688 0.10904120311607235 VLPEFDTPGHTLSWGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLPEFDTPGHTLSWGK 16 0 P07686;Q5URX0 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A 0 ; 181.58 2.2818e-09 1494530000.0 1243470.0 1329560.0 1198000.0 1161970.0 1138090.0 1388660.0 1254860.0 1135660.0 1571800.0 1115020.0 False True 1236775.2956825055 1373813.6008640078 1366667.9867973323 1309075.2828605308 1283019.0155120753 1292665.2027540253 1194157.6277692819 1220408.715964632 1184450.951040935 1043858.4689833496 1.184811286617279 1.316091828236076 1.3092464423154782 1.2540735375126908 1.2291120430930187 1.2383529387973422 1.1439842308625554 1.1691323605902542 1.1346853871813805 1.0 19.993494687422142 1.252641772252301 0.4392591753122021 0.9938821343978147 1.2828799318615014 0.805999636955111 0.03919792433680237 0.4039048649653798 0.22034925333114067 0.047217817356680736 0.0284825419788184 17.89129482002589 -1.252641772252301 0.2889977974636867 VLPFFERPDFQLFTGNK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLPFFERPDFQLFTGNK 17 1 Q96HE7 Q96HE7 ERO1L ERO1-like protein alpha 0 186.85 4.5594e-10 265230000.0 234450.0 252580.0 220390.0 210810.0 187610.0 259680.0 282420.0 214160.0 357180.0 275790.0 False True 233187.747249844 260986.97261216553 251418.99633577932 237498.52438516385 211501.02144840927 241728.93282096795 268758.2656508297 230141.70668244475 269157.77496679034 258188.8460843016 0.9031673938916228 1.010837519010989 0.9737794647166444 0.919863611411075 0.8191717986893663 0.9362485501873334 1.0409367783574859 0.8913696705832942 1.0424841314752507 1.0 17.97806715112202 2.4508167052110394 24.977096963299044 0.9781531193359749 0.9270179928598505 0.20592337245528747 0.0612797733284529 470.37717615257077 446637.14473544405 0.022181309714022032 0.01855862291639083 282.3687980659367 -2.4508167052110394 -0.05113512647612439 VLPGDHEYPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLPGDHEYPK 10 0 Q7Z392-4;Q7Z392-3;Q7Z392 Q7Z392-4 TRAPPC11 Trafficking protein particle complex subunit 11 0 ; 101.65 0.0031897 198060000.0 575040.0 576490.0 492620.0 490010.0 488090.0 580150.0 616650.0 542070.0 767730.0 604150.0 False True 571944.0485329506 595678.1211544364 561976.6140702011 552045.2157581424 550245.368363915 540045.5960262032 586820.2836682393 582522.0159756859 578533.2285549412 565592.6297611621 1.0112296703273354 1.053192863220263 0.9936066781978966 0.9760474000364175 0.9728651672782088 0.9548313885459455 1.0375317017763142 1.0299321195569198 1.0228797160939733 1.0 19.10940379494427 2.187661872050892 24.99999405536692 1.0260447915437896 0.9945919520755496 0.2200336947167394 0.02635171979500312 167.28307028689872 82163.44879857084 0.010917828650442062 0.008063360520659481 154.05006008770007 -2.187661872050892 -0.03145283946823996 VLPPPAGYVPIRT(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLPPPAGYVPIRTPAR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR 142.26 2.4663e-06 767940000.0 603720.0 452180.0 452630.0 570750.0 498560.0 435870.0 466620.0 409660.0 618410.0 483080.0 True False 600469.6385995982 467230.5379514179 516356.36966951226 643006.8914796849 562048.6608033639 405739.3328276163 444047.8079384962 440230.90941132954 466011.14176945144 452249.42081440374 1.3277399836538912 1.0331257851254656 1.141751312228694 1.4217970480133906 1.2427847000693453 0.8971583249282381 0.981864846037529 0.9734250374905258 1.0304294938184018 1.0 18.78675912965763 2.747568433835575 24.593631195414847 0.9752773866272482 1.227681717521493 0.6154414100886292 0.10146869137896267 376.4104428977115 1027695.6859554608 0.032514316624568995 0.03402814754292792 559.2016366752131 -2.747568433835575 0.25240433089424474 VLPSDLDLLLHMNNAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLPSDLDLLLHMNNAR 16 0 Q8WUY1 Q8WUY1 THEM6 Protein THEM6 0 ; 216.54 1.5084e-14 870830000.0 448760.0 718870.0 691160.0 630040.0 825430.0 853580.0 614390.0 535050.0 684840.0 643050.0 False True 446343.92602192325 742797.1533839089 788469.3203295862 709802.9994005439 930543.617793084 794574.0237111894 584669.6085022773 574978.147928849 516070.35838584654 602009.9984571969 0.7414227789667823 1.2338618217097967 1.3097279486225122 1.1790551672224612 1.5457278453478145 1.319868483492777 0.9711958439239237 0.9550973395830238 0.8572454937765279 1.0 19.199427922559376 2.1853576993195327 7.20912315314969 0.9423956078464794 1.2387672254570503 0.3294182263879043 0.19186925282680956 0.2551568534072852 28.141360107995713 0.07383756239741569 0.054707837243758634 153.23490354921816 -2.1853576993195327 0.29637161761057096 VLPSISLS(ph)PGPQPPK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLPSISLSPGPQPPK 15 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 VLPSISLS(1)PGPQPPK;VLPSISLS(1)PGPQPPK;VLPSIS(0.001)LS(0.999)PGPQPPK 343.37 9.565699999999999e-70 1765911000.0 1164440.0 1051240.0 905430.0 854710.0 888150.0 1087010.0 1080270.0 995850.0 1266780.0 1019820.0 True False 1158170.7844214456 1086229.887912002 1032906.6738613572 962916.1983646085 1001250.6380225188 1011867.5572463053 1028013.2130678494 1070165.3838238362 954599.0429823359 954734.2144881701 1.2130818890180208 1.1377301362288836 1.081878766034477 1.0085699074698236 1.0487218566470733 1.0598421444325887 1.0767532968523224 1.1209039831023007 0.9998584197530758 1.0 19.864739636058204 4.462599778106922 2.007879145756817 1.0561486976036134 1.2195992104437914 0.6754035614808948 0.03681866153377631 0.2805687026340077 1.8122071442921213 0.010118108517671373 0.06860061065329516 29013.476997441332 -4.462599778106922 0.16345051284017797 VLPYIFEDPDWR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLPYIFEDPDWR 12 0 Q8IV36-2;Q8IV36;J3KSF1;E9PIM7 Q8IV36-2 HID1 Protein HID1 0 ;; 127.4 0.00062919 268412200.0 249992.7 320879.0 303910.9 313641.3 311333.0 353771.0 304305.0 260625.9 340081.9 321711.8 False True 248646.7670800001 331559.26353954815 346698.9130791025 353348.25642163306 350979.41213473486 329315.6434573576 289584.60459201096 280075.128089504 256273.27260898834 301179.8774926708 0.8255756299192031 1.1008679142171995 1.1511357132002933 1.1732133612752127 1.1653481469500762 1.093418478680972 0.9615005059528189 0.9299264294186442 0.8508977251152005 1.0 18.200265857954907 2.1662024782649505 3.550845228885971 0.9243646799670645 1.0971561622108592 0.35192416768646684 0.09918222429606362 0.25044295256386817 6.303951321175698 0.041107720216567535 0.02937573118423917 146.62312730074302 -2.1662024782649505 0.1727914822437947 VLQASVLDDWFPLQGGQGQVHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLQASVLDDWFPLQGGQGQVHLR 23 0 Q9BSJ8-2;Q9BSJ8 Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 0 169.39 8.5451e-12 178840000.0 71116.0 106090.0 95283.0 76602.0 113830.0 113740.0 81140.0 92588.0 87794.0 108870.0 False True 70733.1193577303 109621.1415172407 108698.01818531715 86299.80534582009 128325.57577673084 105877.42151516056 77214.94821509926 99497.3867123377 66158.34507932802 101921.82339170374 0.6939938572908995 1.0755414087908053 1.0664842382928266 0.8467254850235022 1.2590588698904333 1.0388101192838235 0.7575899414431435 0.9762127815350349 0.6491087274319034 1.0 16.637103467334377 2.254836911923952 24.95442252513323 0.8548615063272988 1.0086205640432484 0.15859234462450433 0.1685955684109311 421.3404516920519 645987.829749219 0.05651987177086889 0.04715513066687816 179.8195522437572 -2.254836911923952 0.15375905771594955 VLQCHKPVHAEYLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLQCHKPVHAEYLEK 15 1 Q9NZJ9;F8VRL4;F8VRR0;A0A0C4DGJ4;A0A024RBG1;Q9NZJ9-2;Q9NZJ9-3;Q96G61;Q8NFP7 Q9NZJ9 NUDT4;NUDT11;NUDT10 Diphosphoinositol polyphosphate phosphohydrolase 2;Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha 0 ; 164.65 9.4808e-07 2770700000.0 2255900.0 2039680.0 2142190.0 1904670.0 1978640.0 2392250.0 2294370.0 1948090.0 3121200.0 2462740.0 False True 2243754.4850540548 2107569.515787404 2443791.7317507267 2145801.0267097843 2230608.0756818964 2226879.3882507733 2183382.5577554484 2093466.3680005816 2352022.081937247 2305565.8247422082 0.9731903817167897 0.9141224653705375 1.059953138411901 0.9307047335981883 0.9674883500371572 0.9658710952222616 0.9470050840988582 0.9080054646605711 1.020149612167431 1.0 21.13668942512975 VLQELQERPSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLQELQERPSQR 12 1 Q9Y2I9 Q9Y2I9 TBC1D30 TBC1 domain family member 30 0 105.14 0.0018808 429970000.0 133430.0 173520.0 164100.0 168300.0 150010.0 193230.0 190730.0 142950.0 192630.0 175940.0 False True 132711.62770546676 179295.50830494502 187203.85361723052 189606.76274381237 169112.88432106972 179872.46491449326 181503.66124064446 153617.6548853918 145158.91760975643 164711.35857018753 0.8057223791819742 1.0885436794484507 1.136557036759905 1.1511456428368678 1.0267226607144193 1.092046513828281 1.1019498765369076 0.9326476098485434 0.8812926981468657 1.0 17.329580521837705 1.675558142599831 6.06653726196046 0.9291344376169695 1.0652897935849852 0.24245365135285957 0.09557931765499544 0.17623746828734957 13.774340108608579 0.04907836168242407 0.024567174698507322 47.37597300686495 -1.675558142599831 0.13615535596801576 VLQGMVDDGSDDRPAGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLQGMVDDGSDDRPAGTR 18 1 Q53GG5-2;A0A087WYF8;Q53GG5;A0A2U3TZH4 Q53GG5-2 PDLIM3 PDZ and LIM domain protein 3 0 ; 205.88 8.333600000000001e-16 890110000.0 182916.0 214660.0 228590.0 227210.0 230650.0 264890.0 220160.0 178856.0 249370.0 229730.0 False True 181931.20057987815 221804.82833528996 260773.48506010152 255974.7627036341 260021.91033034291 246578.77778398906 209510.01970712672 192203.14293236536 187916.1048868037 215068.4347182518 0.8459223726541519 1.0313220934809104 1.212513986079478 1.19020144931529 1.209019401991659 1.1465130999210416 0.9741551333722829 0.8936836462503627 0.8737502792215011 1.0 17.71443627247937 2.1013294758935044 4.17586237986432 0.9152771163518064 1.1155057630445413 0.38225110389628547 0.10687633324928383 0.22641830261216397 7.211301836772679 0.0457867375278342 0.03245168847612989 126.27851785674952 -2.1013294758935044 0.20022864669273488 VLQLYPNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLQLYPNNK 9 0 Q02790;H0YFG2 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 138.9 0.00028792 109660000.0 229510.0 211790.0 240250.0 222040.0 188180.0 254070.0 250320.0 224040.0 333170.0 254280.0 False True 228274.34366095837 218839.3021202412 274075.11170956504 250150.24123372618 212143.60756975497 236506.73891644852 238211.0652847379 240759.00245206864 251064.71774927355 238051.63269993954 0.9589278639760254 0.9192934307494744 1.151326326146364 1.050823463786265 0.8911663623713044 0.993510257560643 1.0006697395140294 1.0113730358469823 1.0546649686949923 1.0 17.860914998227212 VLQNFHPDEAES(ph)DEDNDVVIEGTLEPARPPQTPGAPAGSLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLQNFHPDEAESDEDNDVVIEGTLEPARPPQTPGAPAGSLSR 42 1 Q9BYG4 Q9BYG4 PARD6G Partitioning defective 6 homolog gamma 1 VLQNFHPDEAES(1)DEDNDVVIEGTLEPARPPQTPGAPAGSLSR;VLQNFHPDEAES(1)DEDNDVVIEGTLEPARPPQTPGAPAGSLSR;VLQNFHPDEAES(1)DEDNDVVIEGTLEPARPPQTPGAPAGSLSR 402.42 9.128599999999991e-214 2850180000.0 372436.0 430185.0 432939.0 437777.0 417543.0 449966.0 514139.0 407439.0 464834.0 467641.0 True False 370430.84595752915 444503.447672676 493893.0480267522 493199.5233137134 470714.6260787441 418860.9095260312 489268.1323682879 437844.1671133202 350281.88915648445 437795.75101239665 0.8461270926017735 1.0153215206971924 1.128135773096544 1.1265516446269666 1.0751923128313214 0.9567495996875737 1.1175716786580547 1.0001105906140286 0.8001034462907929 1.0 18.73989842707561 1.434703051452366 8.290715872670557 0.8990436444329918 1.0429653861700334 0.25114821215977656 0.09369045451276455 0.27718222476156934 42.26461620474188 0.057122689945733905 0.02306998844713969 27.208402992709072 -1.434703051452366 0.14392174173704164 VLQQGHFEDDDPDGFLG ddPTM_BT-474_Trastuzumab_2h_R1 2 VLQQGHFEDDDPDGFLG 17 0 Q6SPF0;E9PIW9 Q6SPF0 SAMD1 Atherin 0 ; 137.16 1.8397e-05 93875000.0 126929.0 172687.0 152087.0 169437.0 149222.0 165274.0 166875.0 125426.0 190315.0 171508.0 False True 126245.62836713769 178434.78240350398 173499.52763609827 190887.7068272329 168224.5371919119 153848.99739314808 158802.61872559367 134785.92502032276 143414.41834034593 160562.21260461374 0.7862723508800852 1.1113124284286093 1.0805750918701078 1.1888706796616961 1.0477218422878034 0.958189320497239 0.9890410461435711 0.8394623045724626 0.893201557289856 1.0 17.2927728772397 2.367711080413774 1.822544379427034 0.9024686671967019 1.0548945228106552 0.19273283031742883 0.10647974563716843 0.4633896754317162 3.1372034228427332 0.04936353464621504 0.03559149793361744 233.19062177103004 -2.367711080413774 0.15242585561395328 VLRHEEFEEGCK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLRHEEFEEGCK 12 1 Q9HC38-2;F6TLX2;I3L3Q4;Q9HC38-3;I3L1F4 Q9HC38-2 GLOD4 Glyoxalase domain-containing protein 4 0 ; 97.214 0.0030328000000000004 301360000.0 235470.0 237950.0 236550.0 254470.0 216483.0 324670.0 296180.0 243210.0 405530.0 294850.0 False True 234202.25568317657 245870.0219061872 269854.18387054116 286685.8759086029 244050.82685473052 302226.3270909721 281852.64188252494 261359.56519535618 305592.5653235972 276032.42056621495 0.8484592324436611 0.8907287825170799 0.9776177135895827 1.0385949422916878 0.8841382702586827 1.0948943115849457 1.0210852815925433 0.9468437245858262 1.1070893944151439 1.0 18.074478198843163 4.27756750796213 2.407792670613432 1.0066230216842902 0.8515253566618054 0.4624247303831608 0.061532364380054994 0.2671281370159319 2.9774544309095354 0.015374232688611355 0.05754219561753675 18948.180273373426 -4.27756750796213 -0.1550976650224848 VLRPPGGGSNFSLGFDEPTEQPVRK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLRPPGGGSNFSLGFDEPTEQPVRK 25 2 Q9UK76;J3KT51;Q9UK76-2 Q9UK76 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed 0 121.47 0.00010257 440990000.0 139680.0 136940.0 134620.0 146870.0 123730.0 148230.0 135130.0 133230.0 183510.0 123910.0 False True 138927.97839990677 141497.96511802182 153573.3258619837 165463.72694107983 139486.28209483362 137983.2089958875 128593.2456532705 143172.29912823203 138286.41940801757 116001.95771531177 1.1976347738963105 1.2197894579096804 1.3238856385413629 1.426387366212866 1.2024476555572994 1.1894903475208702 1.1085437537947407 1.234223128195826 1.19210418627068 1.0 16.823789627740855 3.0155169691748243 24.97730598508248 1.1656697667316405 1.2922251378264822 0.39670654201225597 0.08358933570824484 274.08277118131423 441181.5026772352 0.02442879288840211 0.0291897945154697 1036.375097892 -3.0155169691748243 0.12655537109484172 VLS(ph)PLIIK ddPTM_BT-474_Trastuzumab_2h_R1 8 VLSPLIIK 8 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK 151.83 0.00048977 3417263000.0 4278651.0 4575032.0 3885572.0 3721756.0 3948096.0 4606870.0 4531052.0 4560494.0 5826057.0 4917503.0 True False 4255615.218418812 4727309.174454751 4432626.76360274 4192929.9279997596 4450862.623401625 4288407.920305503 4311867.704460461 4900821.219999299 4390303.317514123 4603663.748453873 0.9243974909870531 1.0268580488838708 0.9628476374043228 0.9107810989471034 0.9668087998165448 0.931520665849184 0.9366165602143702 1.064548039948666 0.9536542105162641 1.0 22.13435103221356 1.763425787556568 24.99999999996245 1.0119719577186679 0.9530117628036056 0.2856982469927216 0.03921962096202385 17.247469798019594 17352.959778568773 0.017758579642793045 0.009848950097674492 57.999705388740146 -1.763425787556568 -0.058960194915062325 VLS(ph)PLMSR ddPTM_BT-474_Trastuzumab_2h_R1 15 VLSPLMSR 8 0 A0A087WXR4;Q8NG45;Q8NG42;P06401-5;P06401;Q8NG44 A0A087WXR4 PGR;PR Progesterone receptor 1 VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(1)PLMSR;VLS(0.999)PLMS(0.001)R;VLS(0.999)PLMS(0.001)R;VLS(0.999)PLMS(0.001)R;VLS(1)PLMSR;VLS(1)PLMSR 200.78 0.0001228 8713116000.0 8437202.0 8723489.0 8090191.0 7741578.0 7332516.0 10165330.0 9920480.0 8458991.0 12352730.0 11431080.0 True False 8391777.041893262 9013845.05790453 9229219.571599241 8721660.981038127 8266268.449372673 9462624.663712913 9440588.482486174 9090243.862305947 9308565.209601661 10701538.687760051 0.7841654631862807 0.8422943018665315 0.862419866981859 0.814991305036684 0.772437374713906 0.8842302905969818 0.8821711305201282 0.8494333504305289 0.8698342809570355 1.0 23.351314909212313 -4.999999999999831 0.1622896701955856 1.6164608067860142 0.7978509988843749 0.7268945030808502 0.03157515197809974 71.55089493952677 0.6622835548894658 14.102372284407899 0.1330329105046777 1.0000000000003885e-05 4.999999999999831 -0.8186098079016393 VLS(ph)PLRS(ph)PPLIGSESAYESFLSADDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 VLS(0.999)PLRS(0.996)PPLIGS(0.003)ES(0.001)AYESFLSADDK;VLS(0.905)PLRS(0.917)PPLIGS(0.122)ES(0.047)AY(0.006)ES(0.003)FLSADDK 72.687 0.015852 144799000.0 90656.0 73404.0 63606.0 64225.0 63834.0 68561.0 62058.0 62820.0 88874.0 62731.0 True False 90167.91816882855 75847.20776634503 72561.17192673714 72355.87841486243 71962.88152623929 63821.53944523414 59056.01745541813 67507.94739349642 66972.19355058654 58727.45387328891 1.5353622917720215 1.2915119380110351 1.235557939959325 1.23206224078739 1.225370363944388 1.0867411276323387 1.005594718661533 1.1495125863817017 1.140389871065866 1.0 15.841747470747535 7.999999999999627 0.36167710576692064 1.068304548522437 6.663692063479965 0.8402269903543494 0.059225913011223354 25.067899703800805 0.35030058166050665 0.049009217857610206 96.68274623336553 99999999.99991411 -7.999999999999627 5.595387514957528 VLS(ph)PPHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSPPHIK 8 0 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 VLS(1)PPHIK 91.584 0.0079766 109320000.0 431550.0 465450.0 403280.0 376890.0 340780.0 425130.0 359340.0 331100.0 426400.0 335500.0 True False 429226.58274971205 480942.2218795336 460058.31862740236 424604.23535659735 384176.313038692 395741.7637483755 341957.3513878943 355808.36329173326 321319.4334672696 314088.10276399885 1.366580201454579 1.5312334903716696 1.464742900411874 1.3518634791322826 1.2231482493539605 1.2599705632458484 1.0887306726317998 1.1328298020860803 1.023023255703207 1.0 18.260809771108793 2.796114670112629 0.6067138098564326 1.0186302419011968 1.4950529574214917 0.8901306672783692 0.05773728642966278 0.24821286618153696 0.19617953886842007 0.04474286049253911 0.052481907674339044 625.3377837247151 -2.796114670112629 0.4764227155202949 VLS(ph)PPK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLSPPK 6 0 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3;B7Z7F3;K7ESQ0;K7EL01;Q5XUX1;Q5XUX1-2 Q9H6Z4 RANBP3;FBXW9 Ran-binding protein 3;F-box/WD repeat-containing protein 9 1 VLS(1)PPK;VLS(1)PPK;VLS(1)PPK 82.45200000000001 0.062103 682080000.0 1704770.0 1233950.0 1144430.0 1039980.0 1026260.0 1481490.0 1396680.0 1409880.0 1937850.0 1381580.0 True False 1695591.7077377515 1275021.2798114747 1305555.7964361191 1171641.361368449 1156948.1278804159 1379078.0833523422 1329117.252564269 1515092.4048255766 1460292.8333596366 1293406.3815698521 1.3109504730290207 0.985785517977681 1.0093933469320917 0.9058571057507752 0.8944969998340258 1.0662372654126753 1.027609938765783 1.1713970384054055 1.1290286287185538 1.0 20.302744202989036 1.8614665621584692 7.229120865017569 1.1165059985507007 1.01705578110717 0.0635660829410234 0.11574927687307433 0.5399816150815304 29.35386650086166 0.05031550489047337 0.031066814779266566 72.68864315469519 -1.8614665621584692 -0.09945021744353055 VLS(ph)PPKLNEVSSDANR ddPTM_BT-474_Trastuzumab_2h_R1 7 VLSPPKLNEVSSDANR 16 1 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3;B7Z7F3;K7ESQ0 Q9H6Z4 RANBP3 Ran-binding protein 3 1 VLS(0.999)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR 210.02 6.5191e-12 7498640000.0 5135720.0 4332850.0 3790990.0 3611395.0 3762116.0 5101350.0 4945540.0 4983950.0 7607990.0 5149350.0 True False 5108069.854152127 4477066.292986862 4324728.44012422 4068597.236715331 4241199.172791454 4748705.681786216 4706305.336402536 5355877.656985297 5733102.806342993 4820714.074419664 1.0596085507865463 0.9287143406292622 0.8971136585496097 0.8439822760500734 0.8797865020239819 0.9850627123862108 0.9762672632620509 1.1110133424849633 1.189264228875297 1.0 22.200815432651005 1.9335725418353755 2.0389253782526424 1.1144770888024338 0.9221600602604507 0.5243018206719732 0.07076680254634513 0.23689784146288642 1.8190728972003618 0.04300186549462271 0.021191815392408955 85.81684458442744 -1.9335725418353755 -0.19231702854198307 VLS(ph)PTAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSPTAAK 8 0 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 VLS(0.721)PT(0.279)AAK;VLS(0.757)PT(0.243)AAK 113.15 0.0030458 517560000.0 1047980.0 755970.0 706500.0 749570.0 659110.0 942520.0 779190.0 835840.0 1087060.0 800800.0 True False 1042337.7921215245 781132.0044564845 805969.0589919143 844465.4851448569 743043.7516489581 877365.810853431 741497.6029051424 898214.6251095191 819168.628857717 749692.2584006279 1.390354215935507 1.0419368690333408 1.0750665355826745 1.1264161736796048 0.9911316854653754 1.1703012816554599 0.9890693075676574 1.198111111652326 1.0926731864689494 1.0 19.515938978857243 4.743543635046913 24.862997231295246 1.085173994017343 1.3903543522840245 0.6424171315232645 0.0700463380112526 291.55196729688413 1454660.7631846257 0.015564961084888041 0.12813470009504957 55404.320775174936 -4.743543635046913 0.30518035826668144 VLS(ph)PTAAKPSPFEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLSPTAAKPSPFEGK 15 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 VLS(0.844)PT(0.156)AAKPSPFEGK;VLS(0.586)PT(0.414)AAKPSPFEGK;VLS(0.976)PT(0.024)AAKPSPFEGK 214.19 1.5186e-12 13012880000.0 8304270.0 6032190.0 6387160.0 5958430.0 5089370.0 6754940.0 6532350.0 7079700.0 10025700.0 6398490.0 True False 8259560.733011133 6232967.797614146 7286416.609810057 6712766.627068412 5737471.102440652 6287986.897218379 6216355.274499668 7608023.163988159 7555000.5724972 5990132.8901771065 1.3788610176838545 1.0405391519502432 1.2164031655722791 1.1206373464729493 0.9578203368157691 1.0497241067105052 1.0377658373311769 1.2700925511125376 1.261240895821566 1.0 22.514156578660913 4.748978317369457 24.563816726211847 1.1158569199065902 1.3788612059005732 0.3762993096867313 0.10469023761299316 1396.6909390198057 3293163.763785763 0.026560154793602655 0.37130923761242796 56101.996579329476 -4.748978317369457 0.26300428599398296 VLS(ph)TSTDLEAAVADALK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 VLS(0.25)T(0.25)S(0.25)T(0.25)DLEAAVADALK 88.73 0.0027208 22647000.0 44555.0 32060.0 31222.0 26477.0 27307.0 42284.0 32592.0 33445.0 52829.0 40113.0 True False 44315.12083052587 33127.09771932075 35617.78621351105 29828.98548525204 30784.38458873045 39361.006605829534 31015.400446469255 35940.835730268846 39810.00082233208 37552.953997532895 1.1800701706032826 0.8821435917264216 0.948468294021584 0.7943179513178033 0.8197593347983458 1.0481467478807505 0.8259110707644162 0.9570708001461093 1.060103043423627 1.0 15.196638777301489 1.4165818893283695 6.140923795869873 1.026174997720041 0.9204086575778101 0.1125397278136685 0.11083286401657487 0.4097466533993979 26.41636217795508 0.07156746223206926 0.0268891113543676 26.09647744358381 -1.4165818893283695 -0.10576634014223085 VLSAPPHFHFGQT(ph)NRTPEFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 VLSAPPHFHFGQT(0.698)NRT(0.302)PEFLR 308.19 2.7127999999999986e-66 1676000000.0 300480.0 399320.0 454730.0 491190.0 403630.0 464010.0 408220.0 139900.0 466320.0 321000.0 True False 298862.2490664666 412611.1248059629 518752.03141598473 553374.6036371544 455029.88799755607 431934.0808620508 388472.8390481615 150340.04839780577 351401.6843678639 300513.5051780734 0.994505218290844 1.3730202393448656 1.7262186972548574 1.8414300658775542 1.5141745051621618 1.4373200319436636 1.2926967752013894 0.500277178254334 1.1693374118398971 1.0 18.197070302030912 1.9494791858712333 6.034552530197955 0.8437929139637733 1.4953833002687213 0.49967436478361005 0.2630111980492383 0.16508390276050353 14.080745327005056 0.11852317668709171 0.07351026724628003 89.01827738188436 -1.9494791858712333 0.651590386304948 VLSAPPHFHFGQTNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSAPPHFHFGQTNR 15 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 172.82 5.8108e-07 3375060000.0 4375230.0 4962160.0 5233540.0 5174640.0 4357810.0 5621190.0 5800340.0 2939210.0 6883280.0 5527330.0 False True 4351674.24781375 5127322.495910937 5970376.941254847 5829748.893432204 4912751.272736497 5232610.366157949 5519755.394749434 3158548.7752059675 5186987.875226519 5174571.067214707 0.8409729408076535 0.990869084472889 1.153791659966223 1.1266149054109245 0.9494026092061891 1.0112162531327418 1.0667078146286872 0.6103981826084196 1.0023995820813987 1.0 22.303007848390394 1.7898290563181485 24.999999999698314 0.8287448929123367 1.0250239175220168 0.1886840450105699 0.13294720651677355 152.67623627201098 74470.6457789627 0.059351296999144175 0.03363913443527358 61.63523501977478 -1.7898290563181485 0.19627902460968016 VLSAPPHFHFGQTNRT(ph)PEFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 VLSAPPHFHFGQT(0.427)NRT(0.573)PEFLR 221.8 6.111e-25 2078900000.0 329830.0 517680.0 431800.0 664100.0 517800.0 506160.0 527090.0 138110.0 580140.0 426610.0 True False 328054.2319275576 534910.6658558317 492593.686727118 748174.9919082935 583738.7607589486 471170.35057247774 501592.6430206642 148416.4695083699 437172.2704777245 399383.38456080307 0.8214018024017569 1.3393413109663195 1.2333855282157447 1.8733252830010747 1.4616000147349115 1.1797444981108012 1.2559176530897984 0.37161403114348796 1.0946180722026717 1.0 18.607414788414605 1.9029894863465304 8.143215408833651 0.7629399459436302 1.336342772199947 0.3461536794827442 0.30394554603790663 0.29789241742423833 22.580087191921898 0.1301592464755457 0.0816256192395386 79.98148923884497 -1.9029894863465304 0.5734028262563168 VLSEDEEDVDFDIIHNANDTFTVK ddPTM_BT-474_Trastuzumab_2h_R1 3 VLSEDEEDVDFDIIHNANDTFTVK 24 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 ;; 395.22 1.3182999999999992e-137 664730000.0 546529.0 509690.0 485752.0 448770.0 401291.0 591686.0 581396.0 518247.0 686022.0 611513.0 False True 543586.5485890808 526654.7235358881 554141.659367927 505584.2359865755 452393.0302118956 550784.1394990268 553271.6543315983 556921.2227449437 516961.0703238352 572485.7167973814 0.9495198441456858 0.9199438659921814 0.9679571788584083 0.8831386026797866 0.7902258815166389 0.9620923690118275 0.9664374814916413 0.9728124325275587 0.9030112981959375 1.0 19.126880173650513 2.5790161704836185 21.266345633102393 0.9608605558020548 0.9027855286902355 0.2575396094246635 0.04983627794703928 17.055348384222373 3549.8250560284278 0.01680082823565091 0.015839940645364013 379.3291086183487 -2.5790161704836185 -0.05807502711181922 VLSIWEER ddPTM_BT-474_Trastuzumab_2h_R1 4 VLSIWEER 8 0 Q96P16;A0A0C4DGQ6;Q96P16-3 Q96P16 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A 0 ;;; 137.88 0.0016961 446086000.0 527594.0 683866.0 596701.0 608978.0 549248.0 615811.0 636203.0 562115.0 723425.0 630001.0 False True 524753.492525204 706628.0664042732 680711.3141819313 686074.552360079 619191.4771520493 573241.4350331676 605427.4303585263 604062.875662134 545146.6021483568 589793.7968090081 0.8897236548846477 1.1980934187971788 1.1541513625012996 1.1632447748212742 1.049843997176798 0.9719353410202097 1.0265069480793145 1.0241933349084487 0.9243003319088666 1.0 19.1698511232862 3.0094056476367914 5.658655837122125 0.9977115345437753 1.1119596407340109 0.28247781133018735 0.08297102605862129 0.20553701419210205 22.85206652471924 0.02404914006062347 0.027843665156216835 1021.8935256733263 -3.0094056476367914 0.11424810619023562 VLSLNFSECHTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSLNFSECHTK 12 0 Q9UN86-2;Q9UN86;D6RB17;D6RAC7;D6RE13;D6RBW8;D6RGJ4;D6RBM9;D6REX8;D6RBR0 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ; 158.11 6.467e-05 3198900000.0 2249200.0 2579000.0 2435800.0 2298700.0 2010180.0 2554600.0 2650200.0 2530100.0 3378400.0 2827100.0 False True 2237090.55710961 2664840.4559615813 2778739.4676468577 2589715.184308977 2266164.507729673 2378006.514881567 2521999.701252848 2718908.9095874773 2545838.5882406738 2646672.057597918 0.8452465996637157 1.0068646201600635 1.0498994235684802 0.9784798146315739 0.8562316971700724 0.898489296418466 0.9528946716359635 1.0272934653094576 0.9619017894310793 1.0 21.335748014558856 1.8908538637641927 7.253544139948461 0.9978949949330312 0.9437794931529108 0.14460036527643605 0.061676590182334366 0.5832581556892047 34.344741752830686 0.028570420484853636 0.017712422017190255 77.77747926929587 -1.8908538637641927 -0.05411550178012048 VLSQSTPGT(ph)PSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSQSTPGTPSK 12 0 Q6MZP7-3;Q6MZP7 Q6MZP7-3 LIN54 Protein lin-54 homolog 1 VLSQS(0.003)T(0.013)PGT(0.979)PS(0.004)K 98.508 0.0043025 0.0 108570.0 72789.0 80728.0 64241.0 61864.0 117930.0 107270.0 78883.0 135790.0 104630.0 True False 107985.47118326099 75211.73786312038 92093.80069964506 72373.90401322192 69742.01370334427 109777.77667735955 102080.94028880581 84769.6500197577 102326.373992778 97952.42382175032 1.1024277600293833 0.7678394768463057 0.9401890949348376 0.7388679237271851 0.7119988559982736 1.120725474615396 1.042148180779767 0.865416563596404 1.044653822747533 1.0 16.579793571811116 2.7361579953435027 24.99843316513869 0.9969775401764082 0.8461592153294839 0.3036156344185257 0.1212864396852693 299.4057452514699 3115194.9309415603 0.03877984976763811 0.03816889370694968 544.7007777040374 -2.7361579953435027 -0.15081832484692426 VLSSAAS(ph)LPGSELPSSRPEGSQGGELSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSSAASLPGSELPSSRPEGSQGGELSR 28 1 O15027;O15027-5;A0A0C4DH09;Q8N9G1 O15027 SEC16A Protein transport protein Sec16A 1 VLSSAAS(0.999)LPGS(0.001)ELPSSRPEGSQGGELSR;VLSSAAS(0.999)LPGS(0.001)ELPSSRPEGSQGGELSR 138.15 2.0116e-06 1722510000.0 498970.0 320860.0 330360.0 414020.0 316350.0 344730.0 308020.0 315830.0 546310.0 428110.0 True False 496283.6009607781 331539.6311360344 376871.8164594042 466434.8895495726 356635.2973466467 320899.6265071329 293119.8958493325 339398.8383522441 411679.22067894944 400787.6532765885 1.2382706825010068 0.827220171144431 0.9403279102495713 1.163795555417672 0.8898360376898345 0.8006724355993974 0.7313595951695819 0.8468295756556673 1.02717540651095 1.0 18.61247853977881 3.0243026907388137 24.23355823482488 0.8561366247943107 1.020626534590415 0.23777542028700605 0.13431432324340256 224.12169598002396 223481.89926023936 0.03838812542785301 0.0458802723906578 1057.5543373073956 -3.0243026907388137 0.16448990979610434 VLSSIEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSSIEQK 8 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 ; 155.82 0.00093732 1531080000.0 1370980.0 1525670.0 1394930.0 1327460.0 1285430.0 1576700.0 1659020.0 1376530.0 2009890.0 1562380.0 False True 1363598.7960101974 1576451.0036630097 1591324.0190510857 1495516.2998924595 1449121.891159476 1467706.4401525732 1578766.8645281477 1479253.6584777073 1514579.5406461805 1462667.5707791862 0.9322684273937835 1.0777917246248985 1.0879601427160666 1.0224580962684324 0.9907390579443187 1.0034449860474466 1.0793750378201887 1.0113396153916816 1.0354912974787156 1.0 20.480170486111383 -0.36499349625625577 6.585677238991042 0.999999992588856 1.0292336322152342 0.028263190880200018 0.04502804847649369 0.0 2.195701825583472e-18 0.041953615120056395 0.009888561923514443 0.43152553905703056 0.36499349625625577 0.02923363962637826 VLSSTINNQAVETDEGIEEEIPDS(ph)PGIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSSTINNQAVETDEGIEEEIPDSPGIEK 29 0 Q1RLN5;Q8IWW6-3;Q8IWW6-4;Q8IWW6;Q8IWW6-2 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 VLSSTINNQAVETDEGIEEEIPDS(1)PGIEK 186.56 4.2259e-18 90222000.0 282410.0 256690.0 249310.0 218770.0 217230.0 283730.0 269040.0 252990.0 303660.0 243770.0 True False 280889.53593870095 265233.77147761825 284410.68095863285 246466.25956900668 244892.95287691505 264116.41292857856 256025.50736739312 271869.3984571895 228827.06183553295 228212.38989800308 1.230825092643924 1.1622233639293706 1.2462543382756166 1.079986321860798 1.0730922759556007 1.15732722945771 1.1218738276296953 1.1912999052273123 1.0026934205360392 1.0 17.800017593667153 6.985395599417215 0.019106483811062582 2.5150567338033217e-06 2.5106090867303594 0.4925302659939338 0.05875120306038277 2717.4629093293534 4.75363324083638 245.32812845123848 395.2966120081347 9669312.569193546 -6.985395599417215 2.5106065716736254 VLST(ph)STDLEAAVADALK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 VLS(0.04)T(0.455)S(0.455)T(0.05)DLEAAVADALK 85.288 0.056713 13675000.0 54797.0 38677.0 33671.0 32963.0 36487.0 52040.0 39826.0 42963.0 70161.0 52399.0 True False 54501.979040519065 39964.34056425978 38411.58412642146 37136.112420227466 41133.40317460752 48442.59728898326 37899.46422990562 46169.11722169353 52870.761659233336 49054.8509589591 1.1110415784591257 0.8146868206305481 0.783033346866304 0.7570324176766281 0.8385185638219771 0.9875189984678974 0.7725936067283857 0.9411733257597731 1.0777886513908024 1.0 15.582108188947872 1.4648396289148433 4.824557319852781 1.034230118022814 0.8602320672387616 0.3011128821190858 0.10448878451541907 0.21400139547729388 10.288445978203686 0.06688312817562199 0.02643603831310464 29.16349900242355 -1.4648396289148433 -0.1739980507840524 VLSTNTDDNIGGAHFTETLAQYLASEFQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSTNTDDNIGGAHFTETLAQYLASEFQR 29 0 Q0VDF9 Q0VDF9 HSPA14 Heat shock 70 kDa protein 14 0 ; 274.57 4.0620999999999986e-71 419350000.0 136488.0 160610.0 161177.0 159367.0 175137.0 154802.0 181196.0 156725.0 164135.0 152499.0 False True 135753.16377324224 165955.80675920466 183869.32062440168 179542.84585973318 197439.65883167234 144100.90210471163 172430.857244061 168420.61533342453 123686.12854631871 142766.38325903745 0.9508762544396021 1.1624291585372164 1.2879034715811666 1.257598895210282 1.3829562276816587 1.0093475705919706 1.2077833262134257 1.1796937870719864 0.8663533089712075 1.0 17.12329678703249 1.2491342686720024 24.813160598257344 0.9331766787990479 1.1874130728326728 0.3909033812490619 0.12286087585025061 161.57271149238642 379168.71097614715 0.08364026491855744 0.029830678032733007 17.747380830565575 -1.2491342686720024 0.25423639403362497 VLSTS(ph)PTISK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLSTSPTISK 10 0 A0A087WX19;A0A087WX45;Q6IPM2-2;Q6IPM2-3;Q6IPM2-4;Q6IPM2;H7C427 A0A087WX19 IQCE IQ domain-containing protein E 1 VLST(0.002)S(0.996)PT(0.002)ISK;VLST(0.02)S(0.979)PT(0.001)ISK 199.8 2.8518e-07 286190000.0 959490.0 961500.0 874060.0 911980.0 914600.0 1050120.0 1010090.0 974170.0 1329590.0 1119490.0 True False 954324.212449361 993502.9462609764 997120.0505342871 1027436.5744925835 1031068.8887410876 977527.6761165856 961228.0877814826 1046867.5121350272 1001930.3600932149 1048043.1897563917 0.9105771801934853 0.9479599275788504 0.9514112207208357 0.9803380094778366 0.983803815356837 0.9327169773831584 0.9171645760180088 0.9988782164391167 0.9560010216049443 1.0 19.999266740744822 7.999994066587583 0.007705505412149529 1.8293974029844482 1.719793557797281e-05 0.2916587848515405 0.02567126029963889 29547.033193597465 17.60590620102375 1863.32180853668 2341.8734294254177 99998633.79063444 -7.999994066587583 -1.8293802050488701 VLSTS(ph)TDLEAAVADALK ddPTM_BT-474_Trastuzumab_2h_R1 4 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 VLST(0.002)S(0.982)T(0.016)DLEAAVADALK;VLST(0.005)S(0.992)T(0.003)DLEAAVADALK;VLS(0.001)T(0.012)S(0.985)T(0.001)DLEAAVADALK;VLST(0.001)S(0.999)T(0.001)DLEAAVADALK 369.48 1.0394999999999997e-104 430245000.0 1028624.0 718489.0 638152.0 588028.0 650135.0 975982.0 743255.0 735663.0 1190959.0 875483.0 True False 1023086.0026748705 742403.4720292274 727998.2546833812 662472.2845081307 732925.8385979508 908514.6615545054 707300.9161401724 790561.9086810212 897463.1124829878 819608.9254012948 1.2482611779440418 0.905802083189533 0.8882263627460383 0.8082785142728561 0.8942384787221509 1.1084733625975105 0.8629736624620888 0.9645599067798686 1.094989432970821 1.0 19.64457616957425 1.3522576607686343 7.256311490097035 1.0461265164500981 0.9488409522273167 0.06835552596080363 0.12463571475586564 0.5395626326104075 31.118493305158733 0.08330596333457767 0.030250167296433095 22.50389333996357 -1.3522576607686343 -0.09728556422278145 VLSTS(ph)TDLEAAVADALLLGDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLSTSTDLEAAVADALLLGDSR 22 0 Q7Z460-4;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;H0Y5T1 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 VLS(0.014)T(0.108)S(0.877)T(0.002)DLEAAVADALLLGDSR 159.04 2.1062e-11 310810000.0 57033.0 52964.0 44406.0 46233.0 56025.0 67865.0 48451.0 50996.0 44104.0 61226.0 True False 56725.94066496198 54726.87472258592 50657.97881612874 52086.093059623716 63159.451663808606 63173.65228702627 46107.24002920599 54801.580472440975 33235.16016332191 57318.50426178422 0.9896619145168916 0.9547854646143269 0.8837979892979129 0.9087134029481455 1.1019033465239725 1.1021510958921836 0.8044041034048217 0.9560888089848265 0.5798329979360728 1.0 15.806713342215428 2.2171002020932655 24.999442748949434 0.8438143863109344 0.9851018431709587 0.2728435319830842 0.12353928452509993 359.92621938368154 419278.8522871113 0.046127455456755416 0.0340980014324059 164.8542705763804 -2.2171002020932655 0.1412874568600243 VLT(ph)IDPTEFK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLTIDPTEFK 10 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 1 VLT(1)IDPTEFK 99.215 0.054180999999999986 34443000.0 68407.0 55949.0 55350.0 49088.0 50609.0 68029.0 59766.0 62318.0 102580.0 64330.0 True False 68038.70431273218 57811.22864311531 63142.798889175516 55302.53576689396 57053.75616695567 63326.315353040765 56874.890251708406 66968.48560439209 77300.53350157726 60224.40432431609 1.129753047391471 0.9599302689951814 1.0484586704941654 0.9182745165744232 0.9473527684842497 1.0515058814367093 0.9443827778757242 1.111982531927726 1.2835416866110296 1.0 15.878060598480523 1.585689622016083 5.296627514363033 1.1583906066870797 0.9976131418395758 0.3197538328388907 0.08779279785369205 0.13910992296392843 8.31665450314684 0.045638725155344624 0.021011742077678378 38.5202965604457 -1.585689622016083 -0.16077746484750388 VLT(ph)PEEQLADK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLTPEEQLADK 11 0 O75822;O75822-2;O75822-3 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 VLT(1)PEEQLADK;VLT(1)PEEQLADK 211.82 8.985e-08 330730000.0 1090830.0 776900.0 715060.0 636130.0 667530.0 944380.0 915010.0 972130.0 1398560.0 927730.0 True False 1084957.0924826064 802758.6468540321 815734.2325870603 716663.9927761222 752535.9887397084 879097.2334313986 870747.4706223559 1044675.2769761181 1053903.6277438672 868521.4771303867 1.24920007282644 0.9242818606010338 0.9392217165225014 0.8251540251416638 0.8664563957889714 1.012176735497612 1.002562968850608 1.2028203153107362 1.2134456723234837 1.0 19.728201999326878 1.8926274493048718 3.800275318469745 1.1569272838354303 0.9573950059815445 0.27571061216981185 0.12073105582607427 0.26827812642132076 6.450544804927027 0.059467014799735665 0.03322877954227871 78.09575885678913 -1.8926274493048718 -0.19953227785388583 VLT(ph)PEEQLADKLR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLTPEEQLADKLR 13 1 O75822;O75822-2;O75822-3 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR 115.87 0.001019 503680000.0 721330.0 709330.0 646280.0 668480.0 677020.0 860190.0 809700.0 772290.0 1261690.0 939050.0 True False 717446.4394272971 732939.6202509603 737270.6064335385 753109.4994592009 763234.4839880728 800727.0899694571 770531.7176456222 829922.2014091597 950763.4052798295 879119.0250388475 0.816097046012164 0.8337205763674292 0.8386470835402057 0.8566638623546131 0.8681810565461784 0.9108289857952667 0.876481677337802 0.9440384950973916 1.0814956543999446 1.0 19.745698981339373 1.540965459751555 2.2463830223784322 1.0409624832844409 0.8559062650417493 0.8413799755476423 0.031754324979095035 0.10450741079296788 1.103541678918971 0.025719647257902163 0.008975171920215356 34.75085223445687 -1.540965459751555 -0.18505621824269158 VLT(ph)PPHDVDSLPHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLTPPHDVDSLPHLR 15 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 1 VLT(1)PPHDVDSLPHLR;VLT(1)PPHDVDSLPHLR 86.488 0.014069 219792000.0 94912.0 91436.0 82148.0 79820.0 82300.0 98540.0 94757.0 64483.0 131649.0 100317.0 True False 94401.00433771442 94479.39198577077 93713.72435678386 89925.20381587106 92780.41716968226 91728.1617382092 90173.24190310766 69295.04889803925 99205.86795622097 93914.68317429542 1.0051783293834515 1.0060129980998531 0.9978601980998157 0.9575201744436456 0.9879223784154381 0.9767180023167593 0.9601612746300378 0.7378510639218704 1.0563403357503287 1.0 16.51906311449655 1.9824528765184595 24.465124954368456 0.8889536489395368 0.9866596550450429 0.0178728376014069 0.0806064959014856 796.7362152002439 1110850.2013222899 0.03153052065525949 0.020856170382446106 96.04016035634685 -1.9824528765184595 0.09770600610550617 VLTANSNPSS(ph)PSAAK ddPTM_BT-474_Trastuzumab_2h_R1 5 VLTANSNPSSPSAAK 15 0 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 VLTANSNPS(0.244)S(0.744)PS(0.012)AAK;VLTANSNPS(0.004)S(0.996)PSAAK;VLTANSNPS(0.001)S(0.998)PS(0.001)AAK;VLTANSNPS(0.119)S(0.875)PS(0.006)AAK;VLTANSNPS(0.197)S(0.803)PSAAK 397.84 5.682299999999998e-115 3418470000.0 5081380.0 4206130.0 3914470.0 3755050.0 3772330.0 5038590.0 5122450.0 4936910.0 6610760.0 5454750.0 True False 5054022.414674393 4346128.494390726 4465593.350816818 4230438.944986053 4252713.865148332 4690284.13286507 4874657.523840708 5305327.293321023 4981626.777645605 5106623.184953576 0.9896995003598134 0.8510767951699253 0.874470895752496 0.8284219907689374 0.832783957445451 0.9184707707991401 0.95457552815012 1.0389110574974318 0.9755226883243966 1.0 22.283938176591583 2.213099404599758 2.3188854867125652 1.0070364058998624 0.8721120284792818 0.5986183863520169 0.04572354927020144 0.1894096467812659 2.0662016100315226 0.020828598909876157 0.013961328790804318 163.34257759336805 -2.213099404599758 -0.1349243774205806 VLTANSNPSS(ph)PSAAKR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLTANSNPSSPSAAKR 16 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 VLTANSNPS(0.011)S(0.988)PSAAKR;VLTANSNPS(0.283)S(0.709)PS(0.007)AAKR 184.83 1.0780999999999998e-09 438460000.0 278650.0 242580.0 207546.0 219229.0 213460.0 258900.0 242646.0 217876.0 385250.0 320860.0 True False 277149.77936092525 250654.12865729316 236766.6727778287 246983.3689219443 240642.86572345524 241002.85238504532 230908.2859822646 234135.01347191073 290310.29958551965 300382.4400979338 0.9226563951959575 0.8344500050521338 0.7882174227649111 0.822229717693951 0.8011216156477001 0.8023200434302054 0.7687143293295756 0.7794563936413047 0.9664689436934785 1.0 18.196440951989075 1.1775169922125548 5.834145695283885 0.9920532612345421 0.810310750234701 0.7269123946218059 0.04128022443692895 0.10504200786872837 6.759904051633562 0.040236998842063026 0.010327314689854004 15.049323996587527 -1.1775169922125548 -0.18174251099984107 VLTEDEMGHPEIGDAIAR ddPTM_BT-474_Trastuzumab_2h_R1 9 VLTEDEMGHPEIGDAIAR 18 0 P14324-2;P14324;A0A087WVN4;A0A087X1D8;A0A087WTP2 P14324-2 FDPS Farnesyl pyrophosphate synthase 0 ;;;;;;;; 250.08 8.090199999999998e-25 8651000000.0 3579130.0 4131090.0 3820290.0 4062710.0 3902130.0 4459560.0 4422830.0 3604490.0 4601720.0 4319500.0 False True 3559860.361758729 4268590.833353359 4358153.62544405 4577048.669440962 4399043.125763454 4151281.11387506 4208880.816048654 3873475.347029353 3467687.7658888437 4043825.811889998 0.8803199067802888 1.0555822708293934 1.0777303049577058 1.1318609856990223 1.087841892899792 1.0265726831430555 1.0408165464677896 0.9578739360237114 0.8575264927813793 1.0 21.947289423702887 1.6607177075809925 3.3253873486671743 0.9230822453488047 1.0500560396770622 0.3205978801854249 0.06977295266268155 0.2157075200082566 5.608860468993212 0.04242882472402164 0.0187782196048043 45.784419018936795 -1.6607177075809925 0.1269737943282575 VLTEIIASR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLTEIIASR 9 0 P08758;D6RBL5;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 115.86 0.0043107 0.0 262520.0 332140.0 290940.0 327640.0 347580.0 336330.0 312120.0 50888.0 321150.0 159560.0 False True 261106.621488714 343195.0791171302 331901.8231041862 369119.19040631363 391842.252731934 313080.29873565974 297021.5631858119 54685.52096402815 242006.8856895253 149376.74419381135 1.7479737083433609 2.2975134514368984 2.221910946683606 2.471061960805584 2.6231811039041775 2.09591058116415 1.9884056570441537 0.36609126312912205 1.6201108612698738 1.0 17.18859603322105 1.9003905808052877 5.873088461626468 0.9607473660979124 2.2545484141244443 0.71241165062615 0.35527908690348575 0.11302285248253062 5.4348976642396964 0.152954474786561 0.09255453893701858 79.50429316109263 -1.9003905808052877 1.2938010480265318 VLTGVAGEDAECHAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VLTGVAGEDAECHAAK 16 0 O95373 O95373 IPO7 Importin-7 0 ; 245.39 4.0579e-20 1227770000.0 791410.0 736430.0 725410.0 639360.0 648580.0 825650.0 731570.0 764170.0 1014600.0 804950.0 False True 787149.1364939164 760941.6273686641 827541.4226232485 720302.9104449424 731172.8185651578 768574.7588710422 696181.1642312066 821196.2457766336 764565.4249434607 753577.4018476333 1.0445498160692868 1.0097723545092716 1.0981505291882017 0.9558446268145675 0.9702690351017115 1.0199015482505687 0.9238349803541062 1.0897304560396999 1.01458114729673 1.0 19.523396176739972 3.733675349376544 24.989955412967493 1.000874408650087 1.046719044210342 0.22056440300599844 0.046217394831396835 732.6054134313596 3747548.0171643994 0.012597809936162933 0.020149846796147168 5415.9587679412725 -3.733675349376544 0.04584463556025509 VLTLDHPDAVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VLTLDHPDAVK 11 0 O95749-2;O95749;C9J6G3;C9J7M1;A0A2R8Y4N4;A0A2R8YE82 O95749-2 GGPS1 Geranylgeranyl pyrophosphate synthase 0 92.866 0.009676100000000002 284400000.0 416730.0 449200.0 387520.0 398530.0 346620.0 449140.0 437710.0 380880.0 563320.0 436120.0 False True 414486.371983056 464151.35045286606 442079.4476157781 448983.8571377982 390760.0024223002 418092.0089618364 416536.2950854217 409303.1996694515 424497.33410127216 408286.44821888296 1.0151852303480062 1.1368277161235434 1.0827678693336857 1.0996785690449793 0.9570731630377632 1.024016375722803 1.020206026681826 1.0024902894891663 1.0397046876111316 1.0 18.639222157082223 3.2576169266446713 24.998814965607963 1.0086828480018366 1.087355291185383 0.5384998407733081 0.03454925448108771 172.92312212226764 226846.0169073713 0.00896985546937702 0.012125189059965746 1809.7430882229608 -3.2576169266446713 0.07867244318354638 VLTLSDDLER ddPTM_BT-474_Trastuzumab_2h_R1 3 VLTLSDDLER 10 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 ;; 193.1 1.4184999999999996e-06 267782000.0 222181.0 316057.0 304583.0 340979.0 321641.0 322804.0 319170.0 257337.0 288999.0 292485.0 False True 220984.80218262982 326576.76618450886 347465.63891710475 384146.90643863584 362600.0748344324 300489.3192788804 303730.5277521967 276540.79367080843 217779.06883819748 273818.35689099354 0.8070488943537243 1.1926766703757496 1.2689640054170293 1.4029260521476428 1.324235814397143 1.0974038508254744 1.109240925995006 1.0099424918428632 0.7953413763449572 1.0 18.062859643121207 1.79560798380591 1.5996987866934795 0.9025456105158417 1.204667550828978 0.3350079802508218 0.15812923262358142 0.41770911701912955 2.0526016500472135 0.12105038714344542 0.0499158501863939 62.46086348534102 -1.79560798380591 0.3021219403131362 VLTLSERPLDFLDLERPPT(ph)TPQNEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-5;Q9GZY8-2;Q9GZY8;C9JHF5;A0A0A0MS29;Q9GZY8-4;Q9GZY8-3 Q9GZY8-5 MFF Mitochondrial fission factor 1 VLTLSERPLDFLDLERPPT(0.528)T(0.472)PQNEEIR 150.79 4.3738e-06 368740000.0 52602.0 52880.0 52532.0 47727.0 67251.0 77710.0 47285.0 48977.0 59812.0 59459.0 True False 52318.79667663159 54640.078833364976 59928.0489836706 53769.233306440416 75815.01622209369 72338.09060966349 44997.64390375853 52631.912440166714 45072.134039738135 55664.27571458901 0.939898992755948 0.9816004633478848 1.076598019364224 0.9659558597714418 1.3620048989916775 1.2995424746127515 0.8083756291823111 0.9455240684353764 0.809713832815132 1.0 15.764464109550566 2.217536411025387 24.99993956111382 0.8899170268879265 1.1028619471992285 0.35926889600696876 0.13957963733917686 291.5934681795395 346732.51938893175 0.05609770175493564 0.04147380250051945 165.01993473829538 -2.217536411025387 0.21294492031130197 VLTLSERPLDFLDLERPPTT(ph)PQNEEIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-5;Q9GZY8-2;Q9GZY8;C9JHF5;A0A0A0MS29;Q9GZY8-4;Q9GZY8-3 Q9GZY8-5 MFF Mitochondrial fission factor 1 VLTLSERPLDFLDLERPPT(0.223)T(0.777)PQNEEIR 149.98 4.8603e-06 281050000.0 80960.0 103350.0 125240.0 116390.0 129370.0 183590.0 97638.0 84807.0 115240.0 131930.0 True False 80524.12035550168 106789.94227360573 142872.70339440557 131124.96206626456 145844.5026639345 170898.8554243743 92914.87692661896 91135.72898122008 86840.64613688587 123510.11444904422 0.6519637740982177 0.8646250774681564 1.1567692575764688 1.0616536358272257 1.1808304389848543 1.3836830788046994 0.7522855706279202 0.7378806941258188 0.7031055434145287 1.0 16.91426966578504 VLTPEEQLADKLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLTPEEQLADKLR 13 1 O75822;O75822-2;O75822-3 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J 0 83.85600000000002 0.009130200000000002 306150000.0 328290.0 522450.0 547880.0 543090.0 525390.0 507510.0 565180.0 521870.0 534520.0 460260.0 False True 326522.52311644773 539839.4324223064 625016.7417416706 611845.1383157278 592295.3022694946 472427.02825003624 537840.0842027336 560814.5894021644 402794.70820104337 430885.8127515896 0.7577936275768995 1.2528596125617386 1.4505391527058693 1.4199704891849463 1.3745992203529787 1.0964088727664738 1.248219524258981 1.3015387668971135 0.9348061511444076 1.0 18.716946071817848 1.2367335401515256 24.98190361782498 0.9674029410540977 1.2539000914339058 0.2438230713526327 0.18872404407472115 65.31739039509779 892968.2493452149 0.15378152748402926 0.045987397193770235 17.247793350053488 -1.2367335401515256 0.28649715037980805 VLTPPHDVDSLPHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLTPPHDVDSLPHLR 15 0 Q9P1Y5;Q9P1Y5-2 Q9P1Y5 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 0 ; 158.81 1.0416e-06 162773000.0 114134.0 130041.0 136169.0 135951.0 130016.0 138984.0 139088.0 94892.0 151751.0 142347.0 False True 113519.51522547954 134369.33607355563 155340.41159783452 153162.38266062975 146572.7669347923 129376.36321314477 132359.78207224215 101973.32289181261 114353.99940922065 133262.29259060186 0.8518502347413865 1.0083072522724394 1.1656741646720679 1.1493302395086613 1.099881775147617 0.9708399930549361 0.9932275627199936 0.7652076285756781 0.8581122025307653 1.0 17.023909092911175 2.1067467030516047 2.276147898351036 0.8541833141567211 1.0576998023610884 0.3246442338015002 0.10264428670057024 0.3035993128667876 3.075828826078539 0.05335788073009533 0.0320120067183669 127.86353382080509 -2.1067467030516047 0.2035164882043673 VLVDSLVEDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLVDSLVEDDR 11 0 Q92621;U3KPX2 Q92621 NUP205 Nuclear pore complex protein Nup205 0 ; 125.56 0.0007577 41358000.0 60146.0 68319.0 51652.0 56135.0 54630.0 59780.0 62786.0 53243.0 68917.0 66921.0 False True 59822.18061884884 70592.95661529238 58924.15263276772 63241.68524434878 61586.806682621456 55647.54930698349 59748.80131418811 57216.263022475796 51933.328790487445 62650.04448604942 0.9548625401562122 1.1267822264836802 0.9405285042676808 1.0094435808171072 0.9830289377741029 0.8882284085109436 0.9536912831321718 0.9132677157989315 0.8289432069286349 1.0 15.935027913514464 3.063721518811532 1.202141080541026 0.9117369179570739 1.0219721345619557 0.30723295038027265 0.06303048449831525 0.4984157174039714 1.528400371698867 0.024396549358503057 0.03151680566081946 1158.0345554296134 -3.063721518811532 0.11023521660488178 VLVDVER ddPTM_BT-474_Trastuzumab_2h_R1 4 VLVDVER 7 0 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;; 152.63 0.0041887 935760000.0 1271880.0 1647970.0 1397280.0 1514030.0 1438490.0 1464880.0 1441380.0 1392120.0 1617310.0 1475570.0 False True 1265032.3393991515 1702821.6852310973 1594004.8786245177 1705706.0427630048 1621673.1749017786 1363616.2935566057 1371654.9427936864 1496007.063442124 1218745.6213436907 1381397.8593009654 0.9157624871659358 1.2326801245318153 1.15390715852936 1.2347681236643513 1.1739363601753376 0.9871278461707202 0.9929470597904291 1.0829661081125135 0.8822553279186472 1.0 20.39769746239918 2.7371268050182884 24.916968689414567 1.0018180450205942 1.1530287899858103 0.38629270872277055 0.09536084446607017 131.42279790854207 2283860.890465602 0.02934106644298058 0.029065456582242796 545.9172343797089 -2.7371268050182884 0.15121074496521603 VLVEWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLVEWLR 7 0 P49354;P49354-2;E9PQP6;H0YCW1;B3KVN2;E9PPM9 P49354 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 0 ; 119.57 0.011058 173242000.0 147460.0 216140.0 185315.0 196555.0 195396.0 183407.0 193626.0 150781.0 185802.0 185909.0 False True 146666.09174434605 223334.08924061086 211405.74121314456 221438.8428467621 220278.52239717185 170728.50578363863 184259.57065684986 162033.04387040425 140013.58671924408 174044.12845529732 0.8426948558739616 1.2832038128650431 1.2146674701953157 1.2723143539061588 1.265647536358859 0.9809495287138612 1.0586945523081885 0.9309882804349927 0.8044717622014242 1.0 17.409093618625903 2.300614421466228 1.5322374828822725 0.9161886786748751 1.18455391726412 0.38625651103748426 0.13565429533116385 0.3851344569652507 1.806474051120611 0.0720279786253833 0.04605182213861766 199.80871254504024 -2.300614421466228 0.2683652385892449 VLVPEHEKDVLEWIACVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLVPEHEKDVLEWIACVR 18 1 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ; 215.45 5.7085e-19 669270000.0 372580.0 393780.0 363320.0 326650.0 370570.0 452330.0 435730.0 373640.0 606870.0 458690.0 False True 370574.0706775297 406886.7292549628 414472.2979659488 368003.85650782054 417759.89295952785 421061.4917702877 414652.0752497555 401522.91410547605 457315.02014137426 429416.0114957341 0.8629721779277693 0.947535067073308 0.9651999153973472 0.8569868068635731 0.9728558828172106 0.9805444615436064 0.9656185706849796 0.9350441142306238 1.0649696515704266 1.0 18.712016459939115 2.8155533816551865 0.33742548415072093 1.0150147968121126 0.8852934170012784 0.4111493781238542 0.04463659362460135 2.3466298555203564 0.5247455119645337 0.053454717568756874 0.1118389450424774 653.9633074901903 -2.8155533816551865 -0.1297213798108342 VLVTVEEDDTIMEELVDNHGK ddPTM_BT-474_Trastuzumab_2h_R1 9 VLVTVEEDDTIMEELVDNHGK 21 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ;;;;;;;; 404.11 1.6609e-151 1233290000.0 932837.2 879733.2 759686.9 756177.6 776245.0 922572.9 897671.6 881580.2 1109801.8 897155.6 False True 927814.9081631572 909014.5877520504 866644.2122030924 851909.606627363 875095.1995854202 858797.6069260072 854247.7952694753 947368.1910975496 836306.0169722243 839898.3615144478 1.1046752210472042 1.082291178795702 1.0318441515237846 1.0143008316997515 1.0419060682622452 1.0225018243606065 1.017084726453274 1.1279557557289663 0.9957228818309086 1.0 19.67985522826753 VLVTVEEDDTIMEELVDNHGKK ddPTM_BT-474_Trastuzumab_2h_R1 4 VLVTVEEDDTIMEELVDNHGKK 22 1 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ;;; 258.5 2.2798e-37 420659000.0 804410.0 756160.0 705870.0 669460.0 636950.0 847020.0 861720.0 766250.0 1272180.0 883360.0 False True 800079.1459383528 781328.3284916275 805250.3604679726 754213.5673587198 718061.8070015701 788467.5010706111 820035.3115099255 823431.4659386599 958668.285338629 826983.2085174541 0.9674672202506595 0.9447934618797487 0.9737203272984921 0.9120059024061811 0.8682906733848331 0.9534262521292413 0.991598502924885 0.9957051817470859 1.1592354904729552 1.0 19.657498510925823 1.6560556214354827 1.9504550346098417 1.0752009790877346 0.9373069186428329 0.537129608519519 0.049077848552320454 0.22218826641183126 1.7753219167131584 0.036004958195655454 0.01370624316845763 45.295558760984804 -1.6560556214354827 -0.1378940604449017 VLVWDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLVWDLR 7 0 O43684;O43684-2;J3QT28 O43684 BUB3 Mitotic checkpoint protein BUB3 0 ; 110.36 0.015867 606500000.0 983270.0 1334070.0 1313630.0 1056260.0 681620.0 878110.0 951930.0 789360.0 1693740.0 978880.0 False True 977976.1835715675 1378473.7134876542 1498577.6857233527 1189982.4076992222 768420.2667217365 817408.3225485992 905881.5091742594 848266.0514888614 1276340.4719532195 916407.0403386684 1.0671853668978204 1.5042155426678345 1.6352751776869117 1.2985304076881066 0.8385141458949925 0.891970801802785 0.9885143492999364 0.9256433158516278 1.392765895252762 1.0 19.805629016692087 3.3952429530077 5.651398303274828 0.9927033895236047 1.4210086251193066 0.4690724471686766 0.19431136928083803 0.16287851870389483 8.565258724945048 0.053976742395322366 0.07369476265717549 2484.522608173941 -3.3952429530077 0.4283052355957019 VLVYNNTSIVQDEILAHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLVYNNTSIVQDEILAHR 18 0 O15160;A0A2R8YEY5;E7EQB9;A0A2R8YEZ4;A0A2R8Y5D3;O15160-2;H0Y723;A0A2R8Y8D6;D6RDJ3 O15160 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 0 112.16 0.00023336 0.0 37899.0 46994.0 48803.0 37387.0 51501.0 63617.0 38907.0 45883.0 58665.0 57753.0 False True 37694.955994974734 48558.166881527104 55674.03819671965 42120.19036662451 58059.347079657484 59219.306528309884 37024.919770826564 49307.02244915306 44207.796820725554 54067.15409516911 0.6971877219323214 0.8981084300471026 1.0297201531769564 0.7790347221250904 1.0738376755961911 1.0952917259908288 0.6847950551577993 0.9119589013759212 0.8176460840330324 1.0 15.722464799575036 7.999970666545722 0.009483043364116525 1.6981789263793539 2.642421732008748e-07 0.03700945878531747 0.14022165782103427 90294.70730598396 66.19322538775963 5145.484081698023 6816.946742074078 99993245.95064153 -7.999970666545722 -1.6981786621371806 VLWLADCDVSDSSCSSLAATLLANHSLR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLWLADCDVSDSSCSSLAATLLANHSLR 28 0 P13489;H0YCR7 P13489 RNH1 Ribonuclease inhibitor 0 ;; 337.4 3.7381999999999984e-96 614376000.0 319589.0 414988.0 351590.0 385193.0 350148.0 388854.0 384993.0 336400.0 394264.0 408096.0 False True 317868.36833367596 428800.6247144566 401090.8159249359 433958.3943052716 394737.272310206 361973.4382438562 366369.41777391837 361503.8762045877 297102.92006693163 382050.96389143664 0.8320051468944892 1.122364985934977 1.049835895817579 1.1358651994621978 1.0332058013662657 0.9474480434676101 0.9589543081954524 0.9462189874419802 0.7776525860339308 1.0 18.543405574606854 2.64176208270647 2.564047723074905 0.9217732057509328 1.0470331351263578 0.24918716221114712 0.09418881999011283 0.3859995797039263 4.976443728499936 0.03279445449631367 0.03075742635409176 438.29052556943947 -2.64176208270647 0.12525992937542496 VLYIDIDIHHGDGVEEAFYTTDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VLYIDIDIHHGDGVEEAFYTTDR 23 0 Q92769;Q92769-3;Q13547;Q5TEE2 Q92769;Q13547 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase 1 0 74.69800000000002 0.01046 8717600.0 4326.3 6855.2 3764.9 8949.6 6627.9 5359.3 7199.9 5788.6 5952.0 6300.3 False True 4303.007681497118 7083.371187944089 4294.965194902566 10082.618442376837 7471.923778358902 4988.824205435206 6851.613330711034 6220.574725915207 4485.209352713858 5898.2094600417995 0.7295447390684263 1.2009358494185947 0.7281811919361928 1.7094371623596738 1.2668122129229962 0.8458201152795023 1.1616429319996509 1.0546547673590287 0.7604357531043111 1.0 12.52606134164936 1.3951216220152 6.505363494845564 0.8826430998917982 1.1027158429323105 0.0807085476286814 0.2797399318162511 0.5304859231552325 31.698530708733898 0.18576655109253135 0.06820383494786779 24.83828591782556 -1.3951216220152 0.22007274304051228 VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR ddPTM_BT-474_Trastuzumab_2h_R1 3 VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR 33 0 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ;; 287.66 7.971199999999998e-75 1780094000.0 333353.0 637665.0 656828.0 811265.0 724241.0 712774.0 715701.0 582956.0 639273.0 692635.0 False True 331558.26448700036 658889.2940483673 749303.6731486787 913971.0658191248 816468.7984372759 663501.6110695193 681079.8083866748 626459.1369105874 481732.73496932944 648430.4413053425 0.5113243354515359 1.0161294906543412 1.1555652317005203 1.4095128908186787 1.2591463115051458 1.0232425389126354 1.0503513792714707 0.9661161737710446 0.7429212206625629 1.0 19.30659229584341 1.6012640961320947 2.896068501569971 0.8673808417245346 1.083831254572662 0.09392722429082756 0.22658536875311783 0.48895996004008196 9.524482809414854 0.15986162319411565 0.06385417645546514 39.92676247210149 -1.6012640961320947 0.2164504128481275 VLYQVEGFVDKNNDLLYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VLYQVEGFVDKNNDLLYR 18 1 E9PDF6;O43795;O43795-2;A0A0U1RRI3 E9PDF6 MYO1B Unconventional myosin-Ib 0 ; 236.16 7.4773e-24 423040000.0 331850.0 423230.0 441460.0 370340.0 378110.0 461830.0 476760.0 402830.0 532370.0 468830.0 False True 330063.3564720007 437316.9547020626 503613.73076089297 417225.0060281848 426260.06726644665 429904.7791308832 453697.297399935 432891.2201292929 401174.5468925198 438908.8680144434 0.7520088577046914 0.9963730208514985 1.1474220902374666 0.9505959811558307 0.971181259551173 0.979485288314421 1.0336936217588681 0.9862895276817409 0.9140269794669954 1.0 18.743561894124483 4.737733174414261 8.010902666930642 1.0001852773795716 0.7500492219357215 0.6137789886550754 0.05843797100710215 0.058993321074888236 47.80487893882402 0.013938309543082426 0.08134753901938918 54667.9985734356 -4.737733174414261 -0.2501360554438501 VMATTGGTNLRDDIMR ddPTM_BT-474_Trastuzumab_2h_R1 2 VMATTGGTNLRDDIMR 16 1 P26196 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 0 ; 110.57 0.00080629 1036900000.0 520920.0 759930.0 650960.0 768510.0 653290.0 657370.0 747360.0 632820.0 755970.0 683920.0 False True 518115.42459965334 785223.8106626149 742609.5097542484 865803.2872028948 736482.6091468015 611927.5591825317 711207.3416075504 680044.2417948487 569671.3229790146 640271.6400666295 0.8092118909807343 1.226391677415075 1.1598350813679164 1.3522436931812183 1.1502658607058716 0.9557311629777195 1.1107900102111956 1.0621183248473731 0.8897338056699373 1.0 19.28832458366403 2.786499277069854 10.8181322034135 1.020942625905525 1.1574333455035606 0.18049056083801462 0.13989118266136782 1.5116243569763281 337.9327507833906 0.04258137042258242 0.04512842266485274 611.6447848049039 -2.786499277069854 0.1364907195980356 VMDDLDR ddPTM_BT-474_Trastuzumab_2h_R1 6 VMDDLDR 7 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;; 157.9 0.0033611 9335370000.0 13744650.0 17381080.0 14837160.0 16339440.0 16280620.0 15893520.0 15612720.0 14538540.0 18204810.0 15997960.0 False True 13670650.331574168 17959598.74071527 16926103.161093373 18408011.42867947 18353860.45420502 14794838.371721765 14857473.087217705 15623479.680010261 13718478.507456107 14976956.49625737 0.9127789304182302 1.199148755303071 1.130143041099377 1.2290889296019185 1.2254733102010087 0.9878401112681929 0.9920221836078964 1.043167861502065 0.9159723813636137 1.0 23.836241144225582 2.7202346239826913 24.015048660420938 0.9951644525286654 1.1471266440122485 0.4170422411884186 0.0891247617658583 487.40133557027025 638706.9241121521 0.028484101000763748 0.026908581904637414 525.0910597156296 -2.7202346239826913 0.15196219148358314 VMDQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VMDQHK 6 0 P15311;E7EQR4 P15311 EZR Ezrin 0 75.311 0.078026 77345000.0 252980.0 266540.0 318190.0 151490.0 92466.0 98870.0 229830.0 142170.0 490240.0 200670.0 False True 251617.9837887204 275411.6227731677 362988.38624294027 170668.61846738038 104240.99701107941 92035.34961494568 218712.2448641394 152779.4473246321 369426.9208794424 187863.06879776958 1.3393690702432928 1.4660232292364082 1.932196618344871 0.9084734938036244 0.5548775375499296 0.4899065590907582 1.1642109663372862 0.8132489706590271 1.9664691056288572 1.0 17.519321955782015 3.71738018167896 24.0777324660349 0.9429146560460129 1.5678789936791984 0.30362520314567554 0.40853419502917127 559.3840695283473 635902.8336070298 0.10930870745599046 0.16955737949340122 5216.511650635118 -3.71738018167896 0.6249643376331855 VMDS(ph)DEDDDY ddPTM_BT-474_Trastuzumab_2h_R1 1 VMDSDEDDDY 10 0 O14737;K7EQA1 O14737 PDCD5 Programmed cell death protein 5 1 VMDS(1)DEDDDY 261.16 2.5046e-17 384270000.0 508050.0 522700.0 406140.0 509630.0 451160.0 511880.0 490260.0 491380.0 586060.0 557250.0 True False 505314.71524966165 540097.7535211775 463320.98176783597 574149.1057464591 508612.55176517414 476494.9404359105 466544.2508249264 528049.2707770815 441633.3658016605 521685.82791427214 0.9686188280596714 1.0352931297377144 0.8881226151383449 1.100564889872393 0.9749403272054262 0.9133752824778905 0.8943011787193746 1.0121978449908267 0.8465504373912827 1.0 18.99282171616836 2.9921458168827417 24.798130290653432 0.9379768048332464 0.998544949401846 0.17236495517658545 0.0671374538372638 620.6818782467637 1959698.2059455093 0.018897431520635284 0.02164612403664448 982.0776259102261 -2.9921458168827417 0.0605681445685996 VMEGLDAFDDLMQHTHIQPWYLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VMEGLDAFDDLMQHTHIQPWYLR 23 0 Q9H7Z7;A6NHH0 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 ; 253.11 1.0086999999999998e-43 1758550000.0 702160.0 980990.0 927700.0 942030.0 941070.0 1105390.0 885940.0 199433.0 1087480.0 656320.0 False True 698379.6485773101 1013641.6591290212 1058312.0962870468 1061290.9014114884 1060909.6863411055 1028976.9911081707 843083.6975805401 214315.7031602545 819485.1254854279 614433.0956961788 1.1366243997420358 1.6497185230240927 1.72242039645982 1.7272684509433864 1.726648017127153 1.6746770288184036 1.3721326267838656 0.3488023426170195 1.3337255613760786 1.0 19.22889640161374 1.9567757889214858 7.819222921543501 0.8288001613878259 1.6166771504176356 0.5602550628448344 0.28021824758147357 0.18162916100744217 29.498928942055393 0.11410949743666117 0.07241225247078471 90.52651234596578 -1.9567757889214858 0.7878769890298097 VMEHFIK ddPTM_BT-474_Trastuzumab_2h_R1 5 VMEHFIK 7 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;; 110.36 0.006820399999999999 8907510000.0 12908950.0 17033900.0 14506630.0 12952070.0 13637610.0 14958890.0 15210390.0 14030860.0 22834680.0 15279100.0 False True 12839449.647519177 17600863.064290013 16549037.410111642 14591800.733994355 15374278.797052639 13924817.143739423 14474605.32636757 15077914.020463424 17207379.08303564 14303974.756904371 0.897614115357811 1.2304875647095412 1.1569537622487487 1.0201220976673673 1.0748256382116197 0.9734928493926533 1.0119288919592673 1.0541065876242184 1.2029788485700332 1.0 23.769912759835826 4.789971304803694 22.91552572378719 1.0750953681988316 0.897611388005913 0.2971119181645542 0.08403378589107253 26947.567083783615 12010455.963352183 0.020477178628663984 19.740991368198276 61655.426284488494 -4.789971304803694 -0.17748398019291856 VMEIVDADEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VMEIVDADEK 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 140.75 9.0107e-05 85917000.0 146190.0 137020.0 115030.0 114410.0 112960.0 141210.0 134900.0 126800.0 203780.0 137560.0 False True 145402.9292832359 141580.62786966082 131225.22414131623 128894.29426927846 127344.7864336247 131448.48507258503 128374.37163195584 136262.45987735342 153561.14951210166 128780.80302895897 1.1290730129283253 1.0993923359665925 1.0189812538426832 1.0008812745195723 0.9888491408536151 1.0207149045578336 0.9968440063468798 1.05809605680679 1.1924226740345014 1.0 16.974558025660677 -0.5707203487227863 6.370720847332646 0.9999999999900621 1.0495858085062062 0.05786777796362741 0.06315587091501929 0.0 0.0 0.06253493664568537 0.01473962581125965 0.26870741518062935 0.5707203487227863 0.049585808516144136 VMEKPSPLLVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VMEKPSPLLVGR 12 1 Q9UN86-2;Q9UN86;D6RB17;D6RAC7;D6RE13;D6RBW8;D6RGJ4;D6RBM9;D6REX8;D6RBR0;D6R9X5;D6R9A4;Q13283;E5RH42;E5RIZ6;E5RJU8;Q13283-2;E5RIF8;E5RI46;E5RH00 Q9UN86-2;Q13283 G3BP2;G3BP1 Ras GTPase-activating protein-binding protein 2;Ras GTPase-activating protein-binding protein 1 0 ; 94.688 0.0058999 2240800000.0 1842850.0 2372400.0 2292000.0 1866440.0 1793000.0 2286700.0 2211800.0 1907350.0 3157700.0 2282600.0 False True 1832928.3003598826 2451363.8998539182 2614693.6775788674 2102731.1126295975 2021327.922056382 2128625.8113127993 2104806.7841034806 2049686.1423270532 2379527.1460121903 2136922.513767821 0.8577420512679537 1.1471468357229644 1.2235790772631436 0.9839997000743199 0.9459060443386773 0.9961174528315523 0.9849710368731557 0.9591766332757885 1.1135299154186966 1.0 21.02710316518823 VMES(ph)MLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VMESMLK 7 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 VMES(1)MLK;VMES(1)MLK 62.842 0.055285 1000830000.0 564560.0 1027490.0 1016360.0 1087340.0 1015250.0 844070.0 830410.0 741140.0 567330.0 865960.0 True False 561520.4716885126 1061689.383519178 1159454.6536405138 1224997.1325125175 1144536.0696417976 785721.4276270586 790239.8958257402 796447.6302326631 427519.12333251955 810693.6914143435 0.6926419653135315 1.3096060753438763 1.430200661383856 1.511048063511357 1.4117984162983057 0.9691964251705004 0.9747700077042422 0.9824273195504623 0.5273497596689889 1.0 19.628797390911984 2.613032982283144 4.593184733841266 0.8946622236446508 1.2942682339704517 0.37564216827243047 0.24558490556443632 0.2557534904149396 8.457287042793018 0.08352305686824425 0.0782114252891666 410.23525692061435 -2.613032982283144 0.3996060103258009 VMEYINR ddPTM_BT-474_Trastuzumab_2h_R1 4 VMEYINR 7 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;; 198.39 0.00093189 4952580000.0 2587440.0 3186320.0 3046320.0 2869100.0 2577500.0 2835880.0 3167170.0 2474670.0 3524880.0 2856730.0 False True 2573509.5105316103 3292374.735028885 3475215.376911888 3232327.7658245475 2905729.3469605856 2639842.2905434635 3013961.887335666 2659342.441519641 2656220.5549721145 2674411.0456303987 0.9622714932831111 1.2310653369489142 1.2994320310596563 1.2086129284822182 1.0864931745283237 0.9870742550426512 1.1269628474875035 0.9943656364509197 0.9931983190512151 1.0 21.35078978790368 3.0709964648766963 4.0492192977304455 1.027153498160555 1.1874450684154618 0.3944492751448123 0.08964942614809523 0.22157629895188238 7.195102369008437 0.02704334199751602 0.03242867661538615 1177.596387938789 -3.0709964648766963 0.1602915702549068 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK 31 0 Q12996;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 0 42.347 0.082057 107530000.0 30458.0 32605.0 33283.0 32105.0 30078.0 38112.0 46577.0 16081.0 45947.0 35887.0 False True 30294.01751220193 33690.23771486129 37968.957098977924 36169.48970820018 33908.25501372665 35477.40714599787 44323.892568581185 17281.04587766341 34623.977508256656 33596.660935593536 0.9016972719484553 1.0027852999870177 1.1301407949964521 1.0765798951728829 1.009274554954448 1.0559801527303507 1.3192945767304758 0.5143679578989124 1.030577936737003 1.0 15.036030234844018 1.7440618223002304 24.999999999999996 0.8066073109221582 1.0677719307663682 0.2636889811415294 0.16600109581435493 1.1519784063696825 5254.790120592478 0.07257587763006461 0.040247045527464914 55.47046701617688 -1.7440618223002304 0.26116461984421 VMLGETNPADSKPGTIR ddPTM_BT-474_Trastuzumab_2h_R1 4 VMLGETNPADSKPGTIR 17 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;O60361;P15531;P15531-2 Q32Q12;O60361;P15531 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A 0 ;;; 222.09 3.1686e-15 4196910000.0 2085650.0 2070390.0 2054670.0 1737390.0 1665580.0 2398370.0 2012070.0 1885320.0 2911500.0 2248760.0 False True 2074421.092137497 2139301.679572814 2343949.6764882077 1957343.3958613889 1877681.740333893 2232576.327055701 1914738.4872461748 2026012.1518609778 2193999.8371012094 2105242.2115397025 0.9853598226212346 1.016178408283103 1.1133871739983414 0.9297473635728853 0.8919077007108938 1.060484306659836 0.9095098306269473 0.9623653472059263 1.042160291616323 1.0 21.00555479657534 3.7151754208209278 24.976061473164215 0.9658113333248873 1.0360954879287319 0.21158473721433113 0.059033804051586196 1087.381385292201 1161354.3497861754 0.015438987301668409 0.023933907092518282 5190.096356774775 -3.7151754208209278 0.07028415460384452 VMLMASPS(ph)MEDLYHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VMLMASPSMEDLYHK 15 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 VMLMASPS(1)MEDLYHK 197.49 5.4122e-09 534370000.0 253070.0 270960.0 252760.0 246250.0 228610.0 284000.0 274850.0 258540.0 346040.0 293450.0 True False 251707.49923872008 279978.739801221 288346.4109706958 277425.2247514184 257722.1284223705 264367.7484640902 261554.4554710382 277833.5676395187 260763.07869843845 274721.7697648154 0.9162269865042095 1.0191356150657664 1.0495943267166057 1.009840701699459 0.9381205160515746 0.9623108816254748 0.9520703644816736 1.0113270887755537 0.9491897162779391 1.0 18.067611712798563 3.277481268716257 24.999041422786583 0.9708085798552851 1.0037945173387874 0.1219796464769316 0.03806666505922993 322.17409274498243 206932.88677233737 0.01069687082596974 0.014483401852513957 1894.4418046096025 -3.277481268716257 0.032985937483502314 VMPNS(ph)PQNGVLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VMPNSPQNGVLVK 13 0 A0A0J9YWL0;Q9Y4K1 A0A0J9YWL0 AIM1 Absent in melanoma 1 protein 1 VMPNS(1)PQNGVLVK;VMPNS(1)PQNGVLVK 191.96 3.2722e-06 298320000.0 556170.0 535240.0 548140.0 499510.0 499810.0 669240.0 629710.0 549530.0 733700.0 616670.0 True False 553175.6425162967 553055.1398405872 625313.3474817098 562747.9147840863 563457.8408940332 622977.0140215054 599248.5215741941 590538.7190567987 552889.466076304 577313.5926422508 0.958189187932542 0.9579804579160566 1.0831432958641656 0.9747699031448397 0.9759996093547658 1.0790963905254023 1.037994825016247 1.0229080461348903 0.9576934843086538 1.0 19.138995667921623 VMQEQGTHPK ddPTM_BT-474_Trastuzumab_2h_R1 10 VMQEQGTHPK 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ;;;;;;;;; 136.48 8.851e-05 4147975000.0 7900205.0 7613630.0 7084821.0 6951987.0 6840760.0 8595220.0 8755420.0 7718190.0 10185600.0 8757250.0 False True 7857671.17407529 7867045.072013482 8082302.214431938 7832107.841396709 7711890.23763884 8001052.672371532 8331886.885647581 8294160.52997469 7675495.360047433 8198354.807541079 0.9584448780928072 0.9595882657795136 0.9858444046600188 0.9553267729023528 0.9406631475067687 0.9759339355515496 1.0162876676163948 1.0116859692807496 0.9362238571313473 1.0 22.966902997452916 2.472786169340263 24.1626765398541 0.9951358110419735 0.9608479454657777 0.28234782118193646 0.022990609681651505 96.83855514896942 539742.2481630635 0.00803805472865621 0.006753692352343005 297.0203252614159 -2.472786169340263 -0.034287865576195786 VMS(ph)KSAADLISQAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VMSKSAADLISQAR 14 1 Q14195-2;Q14195 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 VMS(0.5)KS(0.5)AADLISQAR 55.19600000000001 0.081535 569080000.0 122320.0 325080.0 338290.0 427650.0 361200.0 199200.0 173450.0 145150.0 74097.0 184700.0 True False 121661.44271102957 335900.09128499037 385918.2915306088 481790.4461520582 407196.6789998694 185429.77286636166 165059.5608566545 155981.83005676544 55836.787198931226 172912.28787037433 0.7036020644306925 1.9426039376496 2.231873143798299 2.7863285604851744 2.3549319947991725 1.0723921078724676 0.9545854889179033 0.9020864391875897 0.3229197177750023 1.0 17.399680871003685 2.616102795198233 4.455549467661034 0.8270751472125413 2.0533390425747116 0.5439477935935535 0.530524661399584 0.1863927322563876 5.94753974129752 0.18612647998457718 0.17430977956052732 413.14527971232496 -2.616102795198233 1.2262638953621703 VMTIPYQPMPAS(ph)SPVICAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 VMTIPYQPMPAS(0.666)S(0.334)PVICAGGQDR 134.2 1.2897e-05 362350000.0 284640.0 314100.0 306190.0 326320.0 335600.0 312360.0 327200.0 282600.0 343220.0 354380.0 True False 283107.5298664772 324554.6286225402 349298.89054881054 367632.0785416571 378336.6707429571 290767.2884163491 311372.08597461745 303689.04701372306 258638.02991237395 331763.1650000179 0.8533422625940463 0.9782720412090435 1.0528561558327059 1.108116021685642 1.1403817863352512 0.8764302945335519 0.938537242296325 0.9153790385792427 0.7795863350663417 1.0 18.339794190080188 2.710334971368952 24.691873399751444 0.9014473300935534 1.0298971877985779 0.3279057772695936 0.08913321170789731 762.1374416674972 666719.0950991493 0.030013821755046945 0.02830274565350351 513.2571066090654 -2.710334971368952 0.12844985770502448 VMTIPYQPMPASS(ph)PVICAGGQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 VMTIPYQPMPAS(0.062)S(0.938)PVICAGGQDR;VMTIPYQPMPAS(0.395)S(0.605)PVICAGGQDR;VMTIPYQPMPAS(0.064)S(0.936)PVICAGGQDR;VMTIPYQPMPAS(0.12)S(0.88)PVICAGGQDR 198.99 1.7336000000000002e-24 1779000000.0 1527090.0 1646650.0 1569140.0 1690440.0 1666340.0 1764020.0 1735050.0 1567510.0 1789900.0 1762660.0 True False 1518868.3171156482 1701457.749829054 1790061.2727906222 1904449.5306752818 1878538.5218290219 1642077.4494564221 1651119.0029653446 1684485.5558544989 1348803.1284312045 1650165.5297108514 0.9204339139127397 1.0310830757246459 1.0847767939403534 1.1540960566598353 1.1383939901824194 0.995098624890167 1.0005778046125229 1.020797929374795 0.8173744416219548 1.0 20.65417931919829 1.6976726702503855 1.5090952603655317 0.9217646510671842 1.0614017121427444 0.29323916273069184 0.07910831683350221 0.4752187820046586 2.1111096326364023 0.06521847259075575 0.02471877223567618 49.85086175911876 -1.6976726702503855 0.13963706107556018 VNAVPRPIPEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNAVPRPIPEKK 12 2 Q9HD45 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 ; 110.07 0.00086042 1614610000.0 2002630.0 2202300.0 2047970.0 1829130.0 2095910.0 2511180.0 2442830.0 2368620.0 3533900.0 2326220.0 False True 1991848.062593108 2275602.224181539 2336306.374725649 2060697.6704550784 2362811.7150681503 2337588.037281882 2324660.980383174 2545378.452008651 2663017.6968339207 2177758.648022863 0.914632144568206 1.0449285673816544 1.0728031670758043 0.9462470381306662 1.084974093531114 1.0733916907661574 1.0674557451504922 1.168806494842549 1.2228249899278845 1.0 21.054412644318184 2.5877931166070436 1.0799201144689152 1.1392883709963733 1.0035635811761543 0.33550757712280277 0.07165590166553383 0.5311567790498709 1.2716266755695556 0.03949542686872209 0.03132581872364635 387.07321223982376 -2.5877931166070436 -0.13572478982021896 VNCLDKFWHK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNCLDKFWHK 10 1 Q14847;Q14847-2;F6S2S5;K7ESD6 Q14847 LASP1 LIM and SH3 domain protein 1 0 ; 149.31 1.4165e-05 18038700000.0 11745700.0 15223200.0 15207900.0 15307100.0 12824500.0 16191800.0 17677700.0 14250900.0 25341000.0 17485600.0 False True 11682462.456269942 15729895.009381268 17349040.130563553 17244977.290527657 14457624.058233185 15072498.977397364 16822562.115628067 15314374.522603903 19096050.10200301 16369654.037824674 0.7136658129289578 0.9609179872118775 1.0598293702772126 1.0534723122846952 0.8831966775123383 0.9207585537586789 1.0276675412172351 0.9355344033061187 1.1665518439106024 1.0 23.964520495908214 4.726807508404404 3.9898079552796064 0.9966870945553165 0.6911471291876685 0.5583296797602462 0.07715620334863785 0.16563077878647484 5.522398865930643 0.018386954925094685 0.1439542976508939 53309.855875943496 -4.726807508404404 -0.30553996536764794 VNDAEPGS(ph)PEAPQGK ddPTM_BT-474_Trastuzumab_2h_R1 4 VNDAEPGSPEAPQGK 15 0 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK 353.26 1.9994999999999996e-82 4772340000.0 11401830.0 9348440.0 9254550.0 8316030.0 8952110.0 11721950.0 11159860.0 11070290.0 14890200.0 11767580.0 True False 11340443.8141424 9659597.174148692 10557510.19800937 9368838.545338245 10092108.145186935 10911639.187002243 10620014.936994784 11896411.253593583 11220709.728457652 11016562.969667895 1.0293994456679685 0.8768249408408628 0.9583306723773609 0.8504320786014332 0.9160850051848042 0.9904758151018117 0.9640043783378778 1.0798659515084867 1.018530893832481 1.0 23.393170855448766 2.2707532061370954 1.7166948221194955 1.0364423957997038 0.9229663726298285 0.40034964943580864 0.052121890286016936 0.3113584769029768 1.8416080766940115 0.02578328283033897 0.016576510925653345 186.53193959812637 -2.2707532061370954 -0.11347602316987526 VNDFLAEIFKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNDFLAEIFKK 11 1 Q14008;Q14008-3;Q14008-2;H0YDX5 Q14008 CKAP5 Cytoskeleton-associated protein 5 0 110.29 0.0029084 50782000.0 119620.0 126430.0 96712.0 104990.0 116970.0 164080.0 161820.0 149140.0 245050.0 182250.0 False True 118975.97921103133 130638.14612145112 110328.2089642267 118281.72323513273 131865.43616449262 152737.53580277442 153992.14838756926 160269.5841175748 184660.71100176938 170618.64896792505 0.6973210720558329 0.7656733124525564 0.6466362829128223 0.6932520211044969 0.7728664888753297 0.895198366220142 0.9025516807164413 0.9393438823191256 1.0823008628821351 1.0 17.380415819235548 2.426901102739924 0.8929347761140254 1.0180760024295339 0.693877389673779 0.8939443495307468 0.04494243074335397 0.18562866853708335 0.2944039165862816 0.033129204280866936 0.02254534478081765 267.2397782663829 -2.426901102739924 -0.3241986127557549 VNEIVETNRPDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNEIVETNRPDSK 13 1 Q15008;Q15008-4;Q15008-3;Q15008-2 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 166.9 2.9937e-05 529370000.0 551424.0 483325.0 426481.0 416142.0 420307.0 617237.0 509575.0 506382.0 675507.0 549837.0 False True 548455.1944529664 499412.1804488675 486525.8177606947 468825.53453199915 473830.6050952324 574568.8590096112 484924.91048446135 544170.7961956941 509037.3511800543 514745.931920861 1.0654871858944346 0.9702110293231982 0.9451766154715237 0.9107901693996839 0.9205135499119999 1.1162183581820857 0.942066523332943 1.0571638597803568 0.9889099060588897 1.0 18.973500997602663 2.7961994020933045 24.99993401105871 1.0205056903605858 0.9590396522091653 0.20179744184389603 0.05791078330037717 427.2701224888048 185320.8957162937 0.017304149099568594 0.018353813949118076 625.4598006519709 -2.7961994020933045 -0.06146603815142049 VNELREELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNELREELQR 10 1 Q9BUJ2-2;Q9BUJ2;Q9BUJ2-3;M0R247;A0A087X1I2 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 172.61 3.3410000000000007e-06 169780000.0 185000.0 258630.0 225470.0 251890.0 221030.0 229730.0 247590.0 227960.0 290710.0 245610.0 False True 184003.98055543235 267238.3432048635 257214.21617962755 283779.2481731364 249176.8603525505 213849.30582625145 235613.12581435053 244971.5327574249 219068.41581442283 229934.95952270005 0.8002436033971893 1.1622345021374652 1.1186390130215687 1.2341718230329417 1.0836841029732618 0.9300425923494223 1.0246946628013296 1.0653948980439418 0.9527407936103581 1.0 17.81086630585034 2.966918388762574 23.50678363655285 1.0066436999405248 1.0965372411517078 0.11538593025231014 0.11141487719776058 647.4413035055336 460051.9936064067 0.03379801010917651 0.035879580393884405 926.6556728308676 -2.966918388762574 0.08989354121118298 VNFDDYTVNLGGLKDHIK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNFDDYTVNLGGLKDHIK 18 1 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ; 222.79 3.3058e-19 1458080000.0 1098110.0 1109370.0 1016800.0 983770.0 973400.0 1224920.0 1265870.0 1215250.0 1840030.0 1378860.0 False True 1092197.8977714893 1146294.709821674 1159956.6018159636 1108315.1811317906 1097356.7202061827 1140244.1635515257 1204635.0320069974 1305938.1259144621 1386579.2616387892 1290859.9742985617 0.8461009865651594 0.8880085622335275 0.8985921206878156 0.8585866811263059 0.8500974095214886 0.8833213410084398 0.9332034891403168 1.0116807027223025 1.074151565038834 1.0 20.299901082485626 1.8685038385702024 1.9547697751118387 1.039402421852757 0.87066367042061 0.9041211410657226 0.023067300093489274 0.08855122652652556 0.6346360817798566 0.01467855909151451 0.006768438684675249 73.87607926014283 -1.8685038385702024 -0.16873875143214712 VNFEDDSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VNFEDDSR 8 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;O94979-5;H0YAB3;H0Y8V7;H0Y9K1 D6REX3 SEC31A Protein transport protein Sec31A 0 ;;; 217.66 1.6995e-05 3497690000.0 4914520.0 5937220.0 5249300.0 5623530.0 5285840.0 5698520.0 5436610.0 5275940.0 6446350.0 5866390.0 False True 4888060.770374497 6134836.778574722 5988355.812266468 6335468.321406475 5958960.39237173 5304594.725273197 5173620.4044329645 5669657.433480474 4857733.419164475 5491991.967730844 0.8900342169280564 1.1170513020814714 1.0903795649105272 1.1535829547150875 1.0850271499639184 0.965878092400948 0.9420298563492941 1.0323499136185075 0.8845121128557606 1.0 22.388898084808577 2.7370752083868886 24.245149038197223 0.9704571893499832 1.0760688578424333 0.31565492854770905 0.0744990313543406 105.39630695897776 1720278.4534212037 0.023197532189013364 0.022983348745461818 545.8523801889955 -2.7370752083868886 0.10561166849245018 VNFPENGFLS(ph)PDKLSLLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 VNFPENGFLS(1)PDKLSLLEK 130.6 1.0437e-05 253940000.0 103760.0 69855.0 55676.0 51271.0 53721.0 108210.0 108810.0 96119.0 175070.0 123910.0 True False 103201.36768881971 72180.0814467607 63514.69685553274 57761.903343065926 60562.05092068654 100729.69739894076 103546.44460543449 103291.88786239216 131926.34431781183 116001.95771531177 0.88965194830671 0.6222315801247312 0.5475312495277747 0.49793903896711217 0.5220778348354771 0.868344805405339 0.8926266991075685 0.8904322814610401 1.1372768780470168 1.0 16.823789627740855 2.580504321998632 3.7065688402798664 0.9541190360839015 0.6066536575121733 0.6677283985588699 0.12163986345796798 0.15798326840036003 3.9497595952856006 0.04340366068090877 0.04003826334747869 380.6311455358288 -2.580504321998632 -0.3474653785717282 VNFPENGFLSPDKLSLLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 98.269 0.00089688 402490000.0 129880.0 150440.0 129220.0 155740.0 183450.0 171460.0 166550.0 212280.0 260150.0 226980.0 False True 129180.74051102456 155447.3044570996 147413.05279962512 175456.66803161823 206811.27010666137 159607.37377342556 158493.34021721463 228121.4115359985 196039.5183314028 212493.94207264535 0.6079266978202207 0.7315375814523541 0.6937282604942638 0.8257019768198136 0.9732572518983094 0.7511149363442113 0.7458722760342527 1.0735431293284143 0.9225652101855343 1.0 17.697062186904418 5.940365955497725 0.2163815377176516 1.0301200566493658 7.04667305618105e-19 0.5878807083217564 0.09261683460482151 15.31357238959972 0.4146738725012136 0.16725293590237197 4.599744427481065 871697.8112152389 -5.940365955497725 -1.0301200566493658 VNGDAS(ph)PAAAESGAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VNGDASPAAAESGAK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK 274.26 1.8817e-33 3374920000.0 5439000.0 4475350.0 4377660.0 3916490.0 4048900.0 5574530.0 5251720.0 4995440.0 7462580.0 5188740.0 True False 5409717.028329703 4624309.319343799 4993996.476697166 4412317.232433229 4564503.415289511 5189175.862132127 4997674.240081357 5368225.099130342 5623527.152448817 4857590.170896194 1.1136627088760034 0.9519760121077986 1.0280810650964831 0.9083346015621537 0.9396641657086089 1.0682613558514258 1.0288381819496555 1.105121039500938 1.1576783867321012 1.0 22.21180934596801 2.3303461134641017 1.8914276578058078 1.0901743695761774 0.9863536129315202 0.2562065312777635 0.06700615617464449 0.40905574448309745 2.9831438365321765 0.03063627633938911 0.021551892164754383 213.96666297134013 -2.3303461134641017 -0.10382075664465718 VNGDDHHEEDMDMS(ph)D ddPTM_BT-474_Trastuzumab_2h_R1 12 VNGDDHHEEDMDMSD 15 0 Q05519-2;Q05519;Q5T757 Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 1 VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D 350.55 2.510899999999999e-82 14013050000.0 8014923.0 8800720.0 7267639.0 8002637.0 7925945.0 8398970.0 8193660.0 5616867.0 9440910.0 7751482.0 True False 7971771.545109658 9093646.645052424 8290859.39974938 9015770.023671143 8935267.114993416 7818368.9729487365 7797301.362979163 6036026.1374127045 7114324.232212676 7256775.782382381 1.098528021833485 1.2531249301004312 1.1424990448068537 1.242393356779626 1.2312998751712831 1.0773888028798908 1.0744856389126756 0.8317779573769734 0.9803698564704808 1.0 22.790897264105855 2.2016207333008864 1.9394325159002688 0.9250605067064392 1.1931976043382655 0.7047982382311457 0.06866635544872823 0.15699434527479367 1.1779325399208675 0.03299584630952798 0.02060968864246299 159.0818867931704 -2.2016207333008864 0.26813709763182625 VNGEDPYPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNGEDPYPHK 10 0 Q15046;Q15046-2;H3BVA8 Q15046 KARS Lysine--tRNA ligase 0 ; 79.693 0.02624 1310010000.0 2784900.0 2624500.0 2254400.0 2284100.0 2218700.0 2876100.0 2714900.0 2663300.0 3753600.0 2935600.0 False True 2769906.407831476 2711854.895956249 2571799.9244039278 2573266.825805952 2501238.293734799 2677281.9766111607 2583569.915074846 2862048.969963374 2828575.575663094 2748247.4947063923 1.0078809907647701 0.9867578888654527 0.9357963317924118 0.9363300906350378 0.9101211948896974 0.9741779012873026 0.9400790576726643 1.0414087433814398 1.0292288380545884 1.0 21.390080501903586 1.7373972957907586 8.870535053817186 1.0255640943665583 0.9544908146546656 0.542387585088704 0.02841427032781496 0.07928156107091006 23.41544007929142 0.01436692753498596 0.00771825478856251 54.62573528368027 -1.7373972957907586 -0.0710732797118927 VNGLPS(ph)PTHSAHCSFYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNGLPSPTHSAHCSFYR 17 0 O15075-2;O15075;Q5VZY9 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 VNGLPS(0.998)PT(0.002)HSAHCSFYR 193.87 6.823999999999999e-11 534120000.0 113960.0 246550.0 239460.0 314660.0 231090.0 266190.0 246500.0 126340.0 195200.0 225450.0 True False 113346.45202214623 254756.2677073775 273173.8865763677 354495.9237371834 260517.94172225843 247788.91184385965 234575.8532785549 135768.1323415208 147095.57554599224 211061.5879825444 0.5370302247110943 1.2070233629079243 1.2942851856063937 1.6795852202462418 1.2343219067592928 1.1740123544619248 1.1114094967292447 0.6432631045718719 0.6969320043122086 1.0 17.68730451465877 1.8738877423140832 4.361653443770264 0.7516955515739108 1.2130469356478137 0.3007041799969993 0.2759535198303443 0.26048422599778404 7.559721058286695 0.13544173259078043 0.07706054446972548 74.79761365000181 -1.8738877423140832 0.46135138407390297 VNGRPLEMIEPR ddPTM_BT-474_Trastuzumab_2h_R1 7 VNGRPLEMIEPR 12 1 P62249;M0R3H0;M0R1M5;Q6IPX4 P62249 RPS16 40S ribosomal protein S16 0 ;;;;;; 150.21 6.1951e-05 5617750000.0 5120570.0 8139230.0 7952630.0 7625490.0 6968610.0 6806670.0 6951730.0 6048120.0 7095680.0 7033140.0 False True 5093001.420068806 8410139.350281565 9072291.178500874 8590876.25214089 7856021.177312508 6336140.924077702 6615448.261712502 6499461.426131069 5347044.741240706 6584278.983825908 0.7735093595790241 1.27730604534541 1.377871624332246 1.304755808987458 1.1931482849694854 0.9623135562211519 1.004733893864941 0.987118170736205 0.812092676263501 1.0 22.650594035104223 2.7474496524680583 5.512501311179065 0.958779358891802 1.2089553615873168 0.33812354848114745 0.1606812333931442 0.19484778904484498 21.744004094577864 0.051533129197569354 0.05215978403431505 559.0487135889928 -2.7474496524680583 0.25017600269551477 VNHLILVEPWGFPERPDLADQDRPIPVWIR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNHLILVEPWGFPERPDLADQDRPIPVWIR 30 2 A0A2R8YEZ7;A0A2U3TZT9;C9J1D1;Q8WTS1 A0A2R8YEZ7 ABHD5 1-acylglycerol-3-phosphate O-acyltransferase ABHD5 0 89.727 0.00066189 356370000.0 0.0 8892.6 9644.2 10127.0 0.0 7416.2 0.0 0.0 8900.9 0.0 False True 0.0 9188.58481530978 11002.019531110871 11409.0771616553 0.0 6903.535549856986 0.0 0.0 6707.39246094939 0.0 0.0 VNHPGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNHPGSK 7 0 P80303-2;P80303;E9PKG6;Q2L696;H0YEG8 P80303-2 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 0 67.032 0.066262 54381000.0 104000.0 118960.0 110400.0 104730.0 112470.0 80660.0 122310.0 105120.0 151330.0 121400.0 False True 103440.07555548628 122919.51168716158 125943.36038599773 117988.80726179123 126792.3878380821 75084.16405321662 116393.39803042631 112964.58818854426 114036.74921810953 113652.14806423092 0.9101462428763489 1.0815414735293272 1.1081476464027797 1.0381573007763076 1.1156180503198665 0.6606488775802332 1.0241196494116958 0.993950313413363 1.003384020103705 1.0 16.79426542627693 VNIAFNYDMPEDSDTYLHR ddPTM_BT-474_Trastuzumab_2h_R1 13 VNIAFNYDMPEDSDTYLHR 19 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 ;;;;;;;;;;;; 232.84 8.3414999999999985e-22 11303574000.0 6502098.5 7497701.0 7047881.9 7061428.2 8155400.0 8029283.0 7238774.0 6827393.0 8312166.0 7797580.0 False True 6467091.924127063 7747257.445329027 8040162.410232349 7955404.286095465 9193941.849157067 7474237.56510914 6888606.846817927 7336887.734459184 6263744.066617967 7299931.768555904 0.8859112837168893 1.0612780627210732 1.1014024055491796 1.0897915950890085 1.2594558607738662 1.0238777295568775 0.9436535936527876 1.0050625084007587 0.8580551524602922 1.0 22.79945154871052 2.476915580135215 18.02971692804752 0.9607691976786393 1.0864660028890891 0.2953107885427332 0.09239066329279297 0.28894784551149383 24384.447832312995 0.03226742391157313 0.027484831790703875 299.85795866720457 -2.476915580135215 0.1256968052104498 VNIDFEPFKPINTSLYLCDNK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNIDFEPFKPINTSLYLCDNK 21 1 B7Z7P8;P62495-2;P62495;I3L492;D6RJE8 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 82.885 0.0032633 183560000.0 99722.0 93358.0 80893.0 73644.0 75097.0 107810.0 103030.0 96879.0 128140.0 93754.0 False True 99185.10783215573 96465.36459389722 92282.03126543935 82967.32284911061 84660.15781520809 100357.348457442 98046.04528717873 104108.6029215941 96561.61398802999 87770.53945316227 1.1300501107787393 1.0990631388949688 1.051400980789056 0.9452752981356023 0.9645623502221494 1.143405852153803 1.117072378705156 1.1861451868727597 1.100159741407981 1.0 16.421449153967128 2.713096936454154 24.855775199973476 1.1267400636492924 1.037044161084617 0.19211852193986 0.06859115050627826 972.2896197243884 949076.7252695952 0.02334753982122409 0.0220191922022759 516.5316485605846 -2.713096936454154 -0.0896959025646753 VNIEGGAIALGHPLGASGCR ddPTM_BT-474_Trastuzumab_2h_R1 2 VNIEGGAIALGHPLGASGCR 20 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic 0 ; 219.04 9.4817e-25 2347700000.0 664150.0 757770.0 748270.0 822760.0 734080.0 871170.0 844540.0 729520.0 915490.0 905510.0 False True 660574.2901940027 782991.9163683609 853619.9119205669 926921.3316405166 827560.7367669551 810948.0684135967 803686.3737438978 783960.4868274996 689879.7564375026 847719.5765538868 0.7792368000740775 0.9236449623486884 1.006960244318842 1.093429192007807 0.9762199194822414 0.9566230282309015 0.9480568763210697 0.9247875223248024 0.8138065647156246 1.0 19.69322757834994 -0.20938225378737396 7.554879014842752 0.9999999942106622 0.9433118561557036 0.042424920441368696 0.08502420666796512 0.0 0.0 0.08458377965507609 0.01993658790895853 0.6174726788054545 0.20938225378737396 -0.05668813805495865 VNIGEVLDKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNIGEVLDKR 10 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 113.61 0.0023497 567770000.0 873360.0 729130.0 521770.0 505540.0 534650.0 692490.0 543250.0 539330.0 868360.0 758150.0 False True 868657.926799417 753398.6512816078 595230.6806938584 569541.3121658164 602734.5083811749 644619.7962461193 516970.92208346934 579577.5432622487 654364.3134278567 709764.2179151295 1.2238683000264847 1.061477364264221 0.8386315704140407 0.80243734157069 0.8492038527268322 0.9082168133801303 0.7283699417843665 0.816577574119906 0.9219460447724384 1.0 19.436980318576968 4.431890994550605 2.626813255511847 0.8419082053490969 1.2186228318098438 0.7274779066390191 0.07224574301300583 0.137336839435616 1.7398654728139238 0.017676947679782236 0.08385786844603937 27032.79771075338 -4.431890994550605 0.3767146264607468 VNIKPQVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VNIKPQVDR 9 1 P23526;P23526-2 P23526 AHCY Adenosylhomocysteinase 0 ; 132.88 0.00026701 3464800000.0 5093000.0 5297400.0 5029600.0 5061600.0 4810900.0 5531600.0 5681400.0 5070200.0 6680900.0 5663400.0 False True 5065579.853885496 5473720.756654073 5737723.961933099 5702398.041022465 5423539.5985616585 5149213.511985779 5406568.97694436 5448564.069953931 5034481.714473461 5301956.9633193165 0.9554170071411074 1.0323963009362533 1.0821898407755026 1.0755270328434448 1.0229316526111945 0.9711911182247862 1.01973083039881 1.0276515082353346 0.9495515994006859 1.0 22.338093529031838 2.9953576890240456 24.946183849368495 0.9998611459146657 1.040602212200897 0.20831580536328953 0.038462031831651866 336.0878778090843 1806029.1813444458 0.011730696975061034 0.01368258472069421 989.367611668521 -2.9953576890240456 0.04074106628623142 VNIVDLQQVINVDLIHIENR ddPTM_BT-474_Trastuzumab_2h_R1 2 VNIVDLQQVINVDLIHIENR 20 0 O94874;O94874-3;O94874-2 O94874 UFL1 E3 UFM1-protein ligase 1 0 ; 160.05 2.4614e-11 907590000.0 673130.0 834710.0 764960.0 840280.0 842670.0 816850.0 847680.0 768590.0 956860.0 852060.0 False True 669505.9428717729 862492.81775715 872659.718848486 946659.3618441513 949979.0296036 760383.082158071 806674.4799479338 825946.08862094 721054.6742671012 797680.8013147333 0.839315603143885 1.0812505658097749 1.0939961415771482 1.1867646310201678 1.1909262803340002 0.9532423005603389 1.0112747838714147 1.0354343332064906 0.9039388601037691 1.0 19.60545202979953 2.706793178031822 24.801015890146807 0.9898427101513161 1.0854873246366 0.1988682926713612 0.09665687235978801 1073.6055929130648 838168.7099366656 0.03239680217993168 0.030545846071498274 509.0883726175383 -2.706793178031822 0.09564461448528383 VNIVFNYDMPEDSDTYLHR ddPTM_BT-474_Trastuzumab_2h_R1 6 VNIVFNYDMPEDSDTYLHR 19 0 O00148 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 ;;;;; 210.12 1.913e-16 4661410000.0 2470280.0 2904940.0 2493130.0 2800840.0 3038290.0 2805370.0 2685610.0 2461170.0 3110350.0 2680300.0 False True 2456980.2869539075 3001629.171826685 2844141.0333255692 3155426.0568234054 3425198.2221442754 2611441.3750306503 2555696.784273511 2644835.0029680305 2343845.9190546977 2509240.959279719 0.9791727167004268 1.1962299438505526 1.133466685535846 1.2575221383797175 1.3650336008892041 1.0407296140185232 1.0185138955356154 1.0540378727626198 0.9340856287183763 1.0 21.25881958692901 2.507705916977482 24.345765963497676 1.0139691739331613 1.189362896375264 0.4636700876670724 0.09542536706324396 463.9639931600791 369320.47955347114 0.03154094068640373 0.029697160486832894 321.8888379056145 -2.507705916977482 0.17539372244210272 VNKDDIQK ddPTM_BT-474_Trastuzumab_2h_R1 3 VNKDDIQK 8 1 P35579;Q5BKV1;B1AH99 P35579 MYH9 Myosin-9 0 ;; 109.66 0.0032602 4743700000.0 8233500.0 6886700.0 5922100.0 5850500.0 6104000.0 8651700.0 8818400.0 8031300.0 12598400.0 9130900.0 False True 8189171.750827839 7115919.646401936 6755880.20418404 6591172.700134728 6881308.218757475 8053628.342911161 8391820.302440604 8630636.388115054 9493693.129911013 8548158.14464322 0.9580042404760208 0.8324506315856114 0.7903316819679657 0.7710634956215856 0.8050047860976588 0.9421477944881074 0.9817109323953505 1.009648656713671 1.110612715542742 1.0 23.02718216805447 2.382860481967442 1.787803448856732 1.0345569775953487 0.8259115003761321 0.72386278715375 0.05669371330404938 0.19040328818486021 1.2396069526171576 0.027381841368743744 0.019917003646539092 241.46849871060076 -2.382860481967442 -0.20864547721921656 VNLAELFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNLAELFK 8 0 P30044-2;P30044;P30044-3 P30044-2 PRDX5 Peroxiredoxin-5, mitochondrial 0 ; 118.26 0.0044668 790670000.0 1205970.0 1470530.0 1434180.0 1248530.0 1305580.0 1580660.0 1449890.0 1295850.0 1632130.0 1402690.0 False True 1199477.1915158625 1519475.7020958413 1636100.0778839695 1406593.7699853338 1471837.8742210655 1471392.694673411 1379753.2815823292 1392552.9071929692 1229913.4309215168 1313169.1232966725 0.9134217141083931 1.157105870934006 1.245917261423714 1.071144413184283 1.1208288773391655 1.1204898657528004 1.0507049374710389 1.0604520640090944 0.9365994136641405 1.0 20.324621302484722 1.5934257863069234 1.5610466781358656 0.9717390420131561 1.1111143083979196 0.26751787606791766 0.08177299512762747 0.4644379329811372 2.229363103364595 0.06772317777782239 0.02382938570156084 39.21261327824691 -1.5934257863069234 0.1393752663847635 VNLDALTQHLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNLDALTQHLDK 12 0 Q8NFV4;Q8NFV4-4;Q8NFV4-6 Q8NFV4 ABHD11 Alpha/beta hydrolase domain-containing protein 11 0 ; 166.6 5.1467e-05 1040290000.0 2042820.0 2329500.0 2268400.0 1829380.0 2167500.0 3694600.0 2332600.0 1847240.0 3277300.0 2660900.0 False True 2031821.6840986393 2407035.9992875136 2587771.002713743 2060979.3204294443 2443518.2772209747 3439200.9981529145 2219763.2266026693 1985090.4288946567 2469653.3285700805 2491079.0838888986 0.8156391730955009 0.966262377961047 1.0388152746535433 0.827343994720548 0.9809075484694467 1.380606910634035 0.8910850084844878 0.796879730448249 0.991399006375434 1.0 21.24833939263847 4.734074740800922 5.392576597374092 0.9761967688251444 0.8098025733533069 0.09926214616689111 0.15161063935936026 0.4033141854627898 43.59264262049326 0.038644242351121086 0.24793588072063938 54209.41751849373 -4.734074740800922 -0.16639419547183754 VNLEESSGVENS(ph)PAGARPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNLEESSGVENSPAGARPK 19 1 Q8WVM8;Q8WVM8-2;Q8WVM8-3 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 1 VNLEESSGVENS(1)PAGARPK;VNLEESSGVENS(1)PAGARPK 238.69 1.7756e-24 1291780000.0 408930.0 370980.0 345860.0 325422.0 368638.0 403400.0 416210.0 426930.0 538540.0 418070.0 True False 406728.366316394 383327.84503785445 394554.08173098933 366620.39183373033 415581.8642113897 375513.9075014574 396076.3322233974 458789.6845066135 405824.0330662843 391388.41467226524 1.0391936783743942 0.9794051910270251 1.008088300368765 0.9367175370807161 1.0618144243216376 0.9594405287031794 1.0119776604911968 1.172210692262794 1.0368831009116786 1.0 18.57824152641011 1.9706020971324132 23.64803100066613 1.0896479308393139 0.9963092718133607 0.24260269432633974 0.053946694259067576 341.4862153431694 274694.8030486995 0.020693106208485357 0.01338788063297064 93.45490430790058 -1.9706020971324132 -0.09333865902595317 VNLEVIKPWITK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNLEVIKPWITK 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R1E7;M0QXG5;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 0 ; 134.88 0.00012542 1107860000.0 1561840.0 1525720.0 1435290.0 1356910.0 1402550.0 1665190.0 1620020.0 1586750.0 2102620.0 1741060.0 False True 1553431.2269767376 1576502.6678827833 1637366.3562356757 1528694.666872883 1581156.4289348482 1550079.3347356273 1541653.4435226175 1705161.342353237 1584457.4746645205 1629944.06020354 0.9530580005198168 0.967212744519537 1.0045537121262977 0.9378816759404532 0.9700679106357801 0.951001554336816 0.9458321185146089 1.0461471555902995 0.9720931615693981 1.0 20.636391021233404 1.7542235301077571 24.99999999999995 1.0096856264053709 0.9622899503470523 0.4177918288118979 0.02405553243558794 4.778096660073933 7635.783051839299 0.010666226216459242 0.005915003335363535 56.78367941555409 -1.7542235301077571 -0.047395676058318514 VNLFPGLS(ph)PSALK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNLFPGLSPSALK 13 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 VNLFPGLS(0.995)PS(0.005)ALK;VNLFPGLS(0.81)PS(0.19)ALK 180.7 1.3302e-05 750230000.0 2699200.0 2253200.0 1948990.0 1954000.0 1844520.0 2427600.0 2206400.0 2195000.0 3327300.0 2468100.0 True False 2684667.807109315 2328196.3999118377 2223390.8510752306 2201376.199651868 2079408.6886734178 2259785.725955724 2099668.0027334867 2358802.0459841574 2507331.4985357584 2310583.7449532836 1.161900239700507 1.0076225996988957 0.9622636945886521 0.9527359501511495 0.8999495011661913 0.9780150712526601 0.9087175512766099 1.0208684498608591 1.0851506698306028 1.0 21.139825948912716 4.732062041719141 2.885342374039718 0.9724825188374834 1.1936012551721569 0.5444926380734938 0.05068046794315247 0.3068426321454138 3.662475583713608 0.012919557203200146 0.157395694703153 53958.77005321874 -4.732062041719141 0.2211187363346735 VNMEDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VNMEDLR 7 0 D6RGI3;Q9NVA2;D6RER5;D6RDU5;Q9NVA2-2;H0Y961;B1AMS2;Q14141-2;Q14141-4;Q14141;A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599-2;Q92599-4;Q92599;Q92599-3 D6RGI3;B1AMS2;A0A087X142 SEPT11;SEPT6;SEPT8 Septin-11;Septin-6;Septin-8 0 ; 97.093 0.028499 325520000.0 896760.0 1077780.0 1048260.0 896220.0 626800.0 862010.0 833360.0 717000.0 1368930.0 924950.0 False True 891931.9437994017 1113653.2557682309 1195845.8963607429 1009681.3601084942 706619.2646653327 802421.2776532759 793047.1930556459 770506.1808522271 1031575.5442222088 865918.899110464 1.0300409711760077 1.2860941791572604 1.3810137388030268 1.1660230087895225 0.8160340020193858 0.9266702441505578 0.9158446522767001 0.8898133319918853 1.1913073444659996 1.0 19.72387238468882 3.3927092255775646 6.040137383917772 0.9439948444285671 1.2434099941246273 0.5182080322367055 0.12303386411547766 0.14796218004368594 8.377580164031006 0.03393035846071695 0.046209273045348546 2470.0697983851173 -3.3927092255775646 0.2994151496960602 VNMSKYDAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNMSKYDAAR 10 1 Q86UK0-2;Q86UK0 Q86UK0-2 ABCA12 ATP-binding cassette sub-family A member 12 0 61.78 0.093785 190910000.0 130340.0 126890.0 137960.0 125200.0 90440.0 114080.0 136580.0 97707.0 160150.0 112840.0 False True 129638.26392213535 131113.45694337517 157383.56883018356 141050.30716295465 101956.99792012235 106193.9181154345 129973.10361373263 104998.3924860929 120683.1784000544 105638.4545928157 1.227188190340602 1.2411527359876011 1.489832177466244 1.3352174424231613 0.9651504114966131 1.0052581564616772 1.2303578665052894 0.993941012208197 1.1424171137795296 1.0 16.688775575719458 3.250729468949448 24.992350363920295 1.0612282384549292 1.3293684085178805 0.6313659778782346 0.0999210690902381 146.03084617791043 299915.9990857344 0.028024595056629575 0.03766949420167142 1781.2688324408612 -3.250729468949448 0.2681401700629513 VNNADDFPNLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNNADDFPNLFR 12 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 180.97 4.3642e-05 155880000.0 346020.0 402770.0 403860.0 364390.0 390730.0 420680.0 403060.0 347090.0 438430.0 436530.0 False True 344157.06676643627 416175.9559703932 460719.9775859516 410521.73663825175 440487.1494618467 391599.38177420205 383562.4479612755 372991.61828730814 330384.8011610107 408670.2816678645 0.8421387172119857 1.0183660878689211 1.1273635452660322 1.0045304370135042 1.077854615863261 0.9582281837965004 0.9385621249381803 0.912695723224736 0.8084385285189929 1.0 18.640577809429185 2.3091642990338768 2.160968764395796 0.9031444011924601 1.0196975747303287 0.2413660460756506 0.08155558404614785 0.40847239946525093 3.9069033448544457 0.036020810480043707 0.025843009079210378 203.78128619888398 -2.3091642990338768 0.11655317353786865 VNNGNTAPEDSS(ph)PAKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNNGNTAPEDSSPAKK 16 1 G3V167;Q9UGN5-2;Q9UGN5;E9PJ27 G3V167 PARP2 Poly [ADP-ribose] polymerase 2 1 VNNGNTAPEDS(0.248)S(0.752)PAKK 139.9 1.0395e-05 0.0 97200.0 59387.0 54915.0 58770.0 51624.0 118320.0 82832.0 89264.0 141590.0 97769.0 True False 96676.68599993523 61363.6603948004 62646.55467026326 66210.27597417607 58198.01040057937 110140.81689532101 78825.09971103152 95925.33295340759 106697.04170879633 91529.298715748 1.0562375912020574 0.6704264236238765 0.6844426380324125 0.7233779445835994 0.6358402305836324 1.2033394600495375 0.8612007391843955 1.048028711017571 1.165714620409723 1.0 16.481946006508725 2.7449167852759415 24.99867835938451 1.0414846391235708 0.7438456356950689 0.5373247783000581 0.1394590001135164 401.46072429400016 1578937.3152594524 0.04198805407524956 0.04353633119199508 555.7977512250311 -2.7449167852759415 -0.2976390034285019 VNNVVWDLDRPLEEDCTLELLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VNNVVWDLDRPLEEDCTLELLK 22 1 P26639;P26639-2 P26639 TARS Threonine--tRNA ligase, cytoplasmic 0 ;;; 306.66 1.2875e-56 2132420000.0 1739630.0 1703000.0 1262880.0 1303710.0 1280080.0 1498740.0 1423490.0 1526830.0 2236700.0 1673410.0 False True 1730264.0253710637 1759683.325514761 1440682.5268502594 1468759.5523276026 1443090.600371407 1395135.6314544727 1354630.350440124 1640769.8076856437 1685495.2552444725 1566611.541121621 1.104462708178618 1.123241645631507 0.9196169497250083 0.9375390859664159 0.9211540720159775 0.8905434403065999 0.8646880958570443 1.0473367293789555 1.075885891940855 1.0 20.57921606108499 4.2441667225850495 24.998344200309102 0.954496775325201 1.1138522503468726 0.49302573243271064 0.06353973948997702 115.75373506634686 516145.33656120964 0.01698694398056638 0.043868911740939404 17545.539334368154 -4.2441667225850495 0.15935547502167158 VNPCIGGVILFHETLYQK ddPTM_BT-474_Trastuzumab_2h_R1 5 VNPCIGGVILFHETLYQK 18 0 H3BPS8;P04075;J3KPS3;P04075-2;H3BQN4;H3BUH7;H3BR04;H3BMQ8;H3BU78 H3BPS8;P04075 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;;; 261.98 8.1786e-31 8229410000.0 3638527.0 4104935.0 4188530.0 3746609.0 3640780.0 5272265.0 5256166.0 4289479.0 5271772.0 4923525.0 False True 3618937.5749103515 4241565.279989389 4778238.616644596 4220929.315251523 4104411.7524062647 4907805.730126857 5001905.170075986 4609581.704513015 3972614.428725645 4609301.419258181 0.7851379733575292 0.9202186826549574 1.0366513668818829 0.9157416561251569 0.8904628660771825 1.0647612910757998 1.0851764107197377 1.0000608086192113 0.8618690919469085 1.0 22.13611668324527 2.749944360124391 24.60725400507347 1.0090844148787317 0.917624961359975 0.2490109599962691 0.07949487785757615 927.398912853984 2004676.9884513943 0.025427637422505107 0.02673081959780539 562.2692851380468 -2.749944360124391 -0.09145945351875673 VNPFRPGDSEPPPAPGAQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNPFRPGDSEPPPAPGAQR 19 1 Q15942;H0Y2Y8;C9IZ41 Q15942 ZYX Zyxin 0 156.73 1.1892e-08 287650000.0 120010.0 132940.0 133630.0 126630.0 143470.0 143500.0 138990.0 127260.0 159890.0 139720.0 False True 119363.87949436459 137364.82753607313 152443.942467218 142661.3450163336 161740.05408668678 133580.18276266535 132266.5227066384 136756.7874131863 120487.25191623314 130802.94997968986 0.912547305033247 1.0501661281905503 1.1654472815092352 1.0906584678593643 1.2365168684024375 1.021232187679305 1.01118914158416 1.0455176082375888 0.9211355855119593 1.0 16.99703555252875 2.5045505718240872 24.61725896959934 1.0053335169452644 1.0965014569346736 0.23099881812835 0.08315339017845909 950.5481570944206 853097.2114775758 0.027610070624719846 0.025965243785992013 319.55864561747904 -2.5045505718240872 0.0911679399894092 VNPHKVS(ph)PASSVDSNIPSSQGYK ddPTM_BT-474_Trastuzumab_2h_R1 3 VNPHKVSPASSVDSNIPSSQGYK 23 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 VNPHKVS(0.433)PAS(0.433)S(0.067)VDS(0.067)NIPSSQGYK;VNPHKVS(0.984)PAS(0.008)S(0.008)VDSNIPSSQGYK;VNPHKVS(0.995)PAS(0.003)S(0.003)VDSNIPSSQGYK 147.17 7.252999999999999e-08 1689110000.0 1541390.0 1180550.0 1217640.0 1173430.0 1128958.0 1690140.0 1622540.0 1495660.0 1880990.0 1521700.0 True False 1533091.3275045294 1219843.893092456 1389073.128083391 1321986.117685513 1272724.1094416783 1573304.5999616089 1544051.541495281 1607273.7440075902 1417445.2184746715 1424583.8032070852 1.0761678772797831 0.8562808943540494 0.9750729475909027 0.9279805896356538 0.8934006596006961 1.1043959621187023 1.0838615025800833 1.1282409222884786 0.9949890033030397 1.0 20.44210906210919 2.7332741508941676 24.924876275671167 1.0767142662435145 0.9414468511565385 0.42132371487548204 0.06712670480386476 341.75583717685225 1611321.8067766505 0.020236784396190803 0.019595847478286525 541.0957849914462 -2.7332741508941676 -0.13526741508697604 VNPHKVS(ph)PASSVDSNIPSSQGYKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNPHKVSPASSVDSNIPSSQGYKK 24 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 VNPHKVS(0.591)PAS(0.205)S(0.205)VDSNIPSSQGYKK;VNPHKVS(0.716)PAS(0.243)S(0.041)VDSNIPSSQGYKK 129.51 3.6492e-05 1056190000.0 292840.0 305160.0 311040.0 302940.0 297590.0 415240.0 359420.0 350450.0 596620.0 476870.0 True False 291263.3819775827 315317.0661268849 354831.7283918547 341292.17293886235 335486.32254587824 386535.4361698193 342033.481482265 376602.3585490416 449590.99529841065 446435.7483310529 0.6524194871634638 0.7062988734787936 0.7948102940195785 0.7644821773676115 0.7514772815574337 0.865825457783872 0.7661426818101297 0.8435757216059083 1.0070676395856588 1.0 18.768093029997694 2.4798875203115727 0.1835850741188188 1.0815121475304745 0.5509411309378941 0.7731423556195174 0.05263974076202528 2.700574294305784 0.2815334927643439 0.23958538874581073 0.4616295348994418 301.9169672140852 -2.4798875203115727 -0.5305710165925804 VNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLK 36 0 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 187.68 1.9221e-23 147830000.0 41108.0 36068.0 34317.0 37221.0 31930.0 48575.0 41203.0 42758.0 56536.0 37392.0 False True 40886.67909552814 37268.5015764336 39148.5353112888 41933.1747836449 35996.096236062636 45217.12458325064 39209.8534792548 45948.819080724614 42603.46034358716 35005.6105470982 1.1680035987521848 1.0646436669427832 1.1183503072633603 1.197898683333234 1.028295055377817 1.2917107822591292 1.1201019741249767 1.3126129886779978 1.2170466298899845 1.0 15.095298549029348 2.7356794008042566 24.997868428872195 1.210339027715005 1.1173592568562678 0.10811293909610387 0.09448563665486553 418.24140785798073 3628709.988197861 0.02798757356230539 0.027435593212996143 544.1008455379794 -2.7356794008042566 -0.09297977085873721 VNPTVFFDIAVDGEPLGR ddPTM_BT-474_Trastuzumab_2h_R1 5 VNPTVFFDIAVDGEPLGR 18 0 P62937;F8WE65;C9J5S7;E5RIZ5 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;;;; 179.79 1.9047999999999999e-13 2680062000.0 368272.6 408659.2 377109.8 349815.4 333210.3 418033.0 435990.0 329083.2 430838.0 394417.0 False True 366289.8612405327 422261.17443229695 430203.5819428576 394101.9937726194 375642.65661281865 389135.3626538348 414899.4980564598 353641.05943463 324663.7478334228 369244.9693826178 0.9919968899047533 1.143580033435047 1.1650898932006124 1.0673185187372027 1.0173264032300775 1.05386774342376 1.1236429266732515 0.9577410357842444 0.8792638349989294 1.0 18.494218740190075 1.6327681164466814 5.2480047791150035 0.9335526045712784 1.081829615932706 0.5337935238289486 0.05766757021449861 0.1082473327298565 6.460748544748068 0.031888570174415876 0.01515047569542392 42.93071449034884 -1.6327681164466814 0.14827701136142768 VNQAIWLLCTGAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VNQAIWLLCTGAR 13 0 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed 0 ; 134.49 0.00022095 307950000.0 190522.0 219580.0 245870.0 223230.0 189397.0 256760.0 220850.0 224110.0 293640.0 238170.0 False True 189496.25072098407 226888.5875610872 280486.3588596494 251490.89511171269 213515.5853060307 239010.78554802708 210166.64177107043 240834.22620752137 221276.35657441156 222969.78669240428 0.8498741176193603 1.0175754792916811 1.257956797736868 1.1279146777794358 0.9575987333233806 1.0719424774700619 0.9425790143532033 1.080120449412107 0.9924051139703117 1.0 17.766488706815043 3.240315298679495 24.999996799219797 1.0145477079887992 1.0739639543280268 0.059332270579799284 0.10338207253133842 146.6481600936243 2089363.3970194208 0.030386923067068028 0.039100539802806894 1739.0629337848304 -3.240315298679495 0.059416246339227596 VNQSALEAVTPS(ph)PSFQQR ddPTM_BT-474_Trastuzumab_2h_R1 5 VNQSALEAVTPSPSFQQR 18 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 VNQSALEAVT(0.003)PS(0.997)PS(0.001)FQQR;VNQSALEAVTPS(1)PSFQQR;VNQSALEAVTPS(1)PSFQQR;VNQSALEAVTPS(1)PSFQQR;VNQSALEAVTPS(0.995)PS(0.004)FQQR 367.76 1.6689999999999992e-107 1422920000.0 1654540.0 1572150.0 1591060.0 1469520.0 1593070.0 1702700.0 1539250.0 1449840.0 1909890.0 1579390.0 True False 1645632.1404766769 1624478.0623652567 1815067.4182585669 1655561.0813267184 1795938.0216343342 1584996.3567246697 1464790.5969939798 1558034.4229383466 1439223.20071483 1478591.9780161912 1.112972452809193 1.0986655456800185 1.2275647678636947 1.1196875851767873 1.214627191501419 1.0719633139436073 0.9906658623694627 1.0537284430751088 0.9733741438566563 1.0 20.49579256056764 2.5020143316200074 5.016575835542624 1.014318098159717 1.1534964355960549 0.7234406120244736 0.043688357906018355 0.10341689288687093 7.071886445143917 0.0144599961522828 0.01298455262503362 317.69789085077986 -2.5020143316200074 0.13917833743633778 VNS(ph)GDTEVGSSLLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VNSGDTEVGSSLLR 14 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 VNS(0.974)GDT(0.026)EVGSSLLR;VNS(0.977)GDT(0.023)EVGSSLLR;VNS(0.992)GDT(0.008)EVGSSLLR;VNS(0.968)GDT(0.032)EVGSSLLR 308.42 1.2342e-55 1236030000.0 938080.0 795367.0 681085.0 657722.0 642139.0 852470.0 829490.0 740313.0 1076870.0 801431.0 True False 933029.4815104854 821840.3097854947 776975.8479030556 740989.5377622432 723911.5953939564 793540.7553985312 789364.3997404815 795558.9152932428 811489.817818712 750282.9874403998 1.2435700890586998 1.0953737770187402 1.0355770568032188 0.9876134074292936 0.9648514060855761 1.057655269654595 1.0520888957290748 1.0603451345835555 1.0815783263154082 1.0 19.51707532014369 4.699520812824836 2.200917195485176 1.0319303494715408 1.2881963513347954 0.7795014865292142 0.034483103177139866 0.2850512230992828 1.6932396760270527 0.009670963657870301 0.13826981851395334 50063.45440134888 -4.699520812824836 0.25626600186325454 VNS(ph)KEDTEAQGIFIDLSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNSKEDTEAQGIFIDLSK 18 1 Q9H2U2-2;A0A0C4DGB9 Q9H2U2-2;A0A0C4DGB9 PPA2 Inorganic pyrophosphatase 2, mitochondrial 1 VNS(0.5)KEDT(0.5)EAQGIFIDLSK 47.81399999999999 0.085077 467680000.0 48338.0 172960.0 174010.0 262320.0 220990.0 120210.0 153150.0 100620.0 49499.0 127430.0 True False 48077.75357885667 178716.8690434722 198509.0954779663 295529.6851037241 249131.76658964873 111900.16564390248 145741.54941018534 108128.77533800714 37300.634702618154 119297.3083016881 0.4030078655024973 1.4980796431007428 1.6639863740761143 2.4772535886255387 2.0883268041524072 0.9379940523127381 1.2216667038423283 0.9063806793072219 0.312669541615218 1.0 16.86420196639187 2.668805047895112 8.882183794025932 0.900118849289552 1.6679527846408095 0.32344232618104396 0.5404081361996738 0.5240123893111647 63.332398826707056 0.18591333220750655 0.17525626032824354 466.4499468170418 -2.668805047895112 0.7678339353512575 VNSGDT(ph)EVGSSLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VNSGDTEVGSSLLR 14 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 VNS(0.171)GDT(0.829)EVGSSLLR 305.8 2.3190999999999998e-43 456960000.0 553100.0 549460.0 447380.0 440340.0 427080.0 540890.0 526290.0 494950.0 665660.0 467350.0 True False 550122.1710551869 567748.4439444166 510367.21530333074 496086.99885092303 481466.1064985164 503499.5474181048 500831.3420769601 531885.6823051749 501617.0123870138 437523.32288153435 1.2573550763695864 1.2976415524667757 1.166491449968988 1.1338526951744825 1.1004352941177498 1.1507947601559847 1.1446963301944186 1.2156738955129724 1.146492052317023 1.0 18.739000398601636 4.406154861594037 0.019907397830094247 3.4055178247520027e-09 2.4368922685654058 0.5732541727153393 0.051387740936971855 1268.9645856248355 4.375451484825286 234.31293826615322 304.1567107602125 25477.38568339736 -4.406154861594037 2.436892265159888 VNSNS(ph)LDLPSSSDTTHASK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNSNSLDLPSSSDTTHASK 19 0 Q8NEY1-5;Q8NEY1-3;Q8NEY1;Q8NEY1-2;A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;H0Y6F6;Q8NEY1-6 Q8NEY1-5 NAV1 Neuron navigator 1 1 VNS(0.185)NS(0.815)LDLPSSSDTTHASK;VNS(0.06)NS(0.94)LDLPSSSDTTHASK 223.69 1.379e-19 444930000.0 336840.0 441000.0 454180.0 452050.0 439330.0 528980.0 577110.0 548230.0 538110.0 609670.0 True False 335026.4908664422 455678.4184098707 518124.59619667055 509279.48365026945 495276.0713870785 492412.85768498015 549192.9845257072 589141.7064555316 405500.00080457865 570760.3386352526 0.586982781017205 0.7983708529913717 0.9077796075241676 0.8922825381805781 0.8677478757044247 0.862731385404933 0.9622129418433047 1.032205054514178 0.710455813685603 1.0 19.122525561804387 4.837774876150618 1.4691845266677543 0.914950718809501 0.39450141558677115 0.5684694234178873 0.08406174862150319 1.0396593606380036 1.7257895516498865 0.022645758143671306 0.8439634947616091 68829.54143494496 -4.837774876150618 -0.5204493032227298 VNSYWFITADHLIEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VNSYWFITADHLIEK 15 0 Q9NQE9 Q9NQE9 HINT3 Histidine triad nucleotide-binding protein 3 0 60.949 0.093312 161180000.0 99180.0 103170.0 115640.0 98533.0 126910.0 135340.0 132240.0 102850.0 113290.0 137210.0 False True 98646.02589993387 106603.95108241795 131921.10683910124 111007.26769718381 143071.2362454967 125984.2643560915 125843.04599414264 110525.18926171775 85371.19750822456 128453.14032860883 0.7679534003417713 0.829905371014704 1.0269979114688879 0.8641849269952062 1.1138010007345234 0.980779948499496 0.9796805720141286 0.8604319752632922 0.6646096567964626 1.0 16.970882635061923 -1.2414533656841147 8.37839023774785 1.0000000404240708 0.908369562341046 0.05101487268459348 0.12495831260828959 9.504557101451224e-08 8.66659189224709e-09 0.12182281676063546 0.028713900869999684 0.05735174472452421 1.2414533656841147 -0.09163047808302471 VNTLIRPDGEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VNTLIRPDGEK 11 1 P62750;H7BY10;K7EJV9;K7ERT8;A8MUS3;K7EMA7 P62750 RPL23A 60S ribosomal protein L23a 0 ;;; 119.25 0.00055718 2211230000.0 2140600.0 2077400.0 2038490.0 1985510.0 1858710.0 2392870.0 2352400.0 2172990.0 2996080.0 2540090.0 False True 2129075.2474430185 2146545.00318518 2325491.6731272857 2236875.362421072 2095405.7010627026 2227456.529110096 2238605.424959321 2335149.548019643 2257736.2294151452 2377979.2815195434 0.8953296035794418 0.902676074542384 0.9779276426837841 0.9406622588367107 0.8811707138691829 0.9367014029183373 0.9413897935766868 0.9819890215895691 0.9494347772333988 1.0 21.18130471477813 1.9740703426194155 2.2236610163203165 0.975574222862855 0.9226523629242703 0.43435510569396285 0.027886303573452825 0.3271271015007202 2.9952760045879243 0.01622328781690222 0.008497937977429865 94.20421666109397 -1.9740703426194155 -0.05292185993858467 VNTLIRPDGEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNTLIRPDGEKK 12 2 P62750;H7BY10;K7EJV9;K7ERT8;A8MUS3;K7EMA7 P62750 RPL23A 60S ribosomal protein L23a 0 ; 103.85 0.0012380999999999998 5047700000.0 4026600.0 3530220.0 3157140.0 2979230.0 3105090.0 4781000.0 4263200.0 4396500.0 7287100.0 5044500.0 False True 4004921.2329973206 3647721.238636943 3601637.8696471797 3356400.212532668 3500504.8061896553 4450500.723263429 4056972.728994466 4724589.154974645 5491291.847137286 4722555.691186264 0.8480410809070459 0.7724040704156667 0.7626459284257758 0.7107169151645452 0.7412310272428697 0.9423924278054415 0.8590629723151851 1.0004305854544344 1.162779690959647 1.0 22.171136379156348 1.9882250894025142 1.1301942553923368 1.0773501963173602 0.7693013785065776 0.757397651577541 0.06744166704999462 0.2324792319032039 0.5477271847585724 0.05211382137219251 0.024042742428351794 97.32515171796472 -1.9882250894025142 -0.3080488178107825 VNVCEHCLVANHAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNVCEHCLVANHAK 14 0 O95159;E9PQ47;E9PNY1;E9PJX1;E9PJ47;E9PMQ3 O95159 ZFPL1 Zinc finger protein-like 1 0 ; 224.16 1.881e-12 698220000.0 373190.0 441370.0 396860.0 380760.0 394850.0 426450.0 442490.0 337510.0 533850.0 433890.0 False True 371180.78650530655 456060.7336362005 452734.4384310426 428964.1769597973 445131.80704069353 396970.51525532117 421085.068224048 362696.71004105307 402289.8207235032 406198.76872808236 0.9137910182927769 1.1227526244460302 1.114563788188418 1.0560449956630826 1.0958472583127739 0.9772814341568358 1.0366478203333276 0.8929045038141156 0.9903767605775391 1.0 18.63182634097245 2.3981460071947356 1.723721273932004 0.9579152135912596 1.0658925303269227 0.2465573927494279 0.06574322049824109 0.40910266646575905 2.4723052116771136 0.029900567908079278 0.02183637175846321 250.11861040984806 -2.3981460071947356 0.10797731673566302 VNVEHMTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNVEHMTEK 9 0 P17858;P17858-2 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type 0 ; 141.95 0.00010548 873700000.0 1573480.0 1706780.0 1639400.0 1429370.0 1395160.0 1999390.0 1938460.0 1606180.0 2484630.0 2017670.0 False True 1565008.5585100611 1763589.1405297029 1870213.2700797538 1610328.0954433903 1572825.3562388073 1861176.8753578053 1844689.2841636846 1726041.3076167784 1872326.2288362614 1888900.573185804 0.8285288176235399 0.933659063671757 0.9901067830825355 0.8525213652338642 0.83266709670488 0.9853228389987514 0.9765941682427715 0.9137809221507364 0.9912254013870151 1.0 20.849115333333714 2.7161294259749185 24.893355317366186 0.963895199545697 0.8938186919305674 0.40862582771481315 0.050743231262087136 988.2565696595005 1096731.284630839 0.01728572392392979 0.016308160368596957 520.1509858804576 -2.7161294259749185 -0.07007650761512962 VNVPVIGGHAGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VNVPVIGGHAGK 12 0 P40926;G3XAL0;P40926-2 P40926 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase 0 ; 128.28 0.00025474 3507800000.0 5059400.0 4762800.0 4848100.0 4091300.0 5154400.0 8050900.0 5032700.0 4223100.0 7168600.0 5704600.0 False True 5032160.752552179 4921326.918826599 5530670.339559378 4609258.160509555 5810782.287477645 7494360.232780072 4789249.074219005 4538249.166467278 5401994.584318638 5340527.544046227 0.9422591141135814 0.9215057647840492 1.0356037477468172 0.8630716951639146 1.0880539870926556 1.403299612439037 0.8967745292425646 0.8497754442867069 1.0115095446592979 1.0 22.34855082951184 VNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_BT-474_Trastuzumab_2h_R1 5 VNVTVDYIRPASPATETVPAFSER 24 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 VNVTVDYIRPAS(0.999)PAT(0.001)ETVPAFSER;VNVTVDYIRPAS(0.999)PAT(0.001)ETVPAFSER;VNVTVDYIRPAS(1)PATETVPAFSER;VNVTVDYIRPAS(0.996)PAT(0.003)ET(0.001)VPAFSER;VNVTVDYIRPAS(0.999)PAT(0.001)ETVPAFSER 208.19 4.0376999999999997e-25 3703070000.0 1648430.0 1786050.0 1546860.0 1718790.0 1840220.0 1766730.0 1787500.0 1657320.0 1828810.0 1754180.0 True False 1639555.0360377918 1845497.5945599766 1764644.4424518533 1936388.6377684912 2074561.1091615171 1644600.113535076 1701031.7960868836 1780997.6341004362 1378124.2802984924 1642226.7305709429 0.9983731268749826 1.1237775882008472 1.074543733579559 1.1791238089854248 1.2632610775007098 1.0014452224652974 1.0358081283304263 1.0845016713869027 0.8391802755636357 1.0 20.64722189283994 1.3232341743281029 6.948390694587318 0.9209883190117997 1.0980803742593468 0.4083819686963529 0.08445374611371631 0.1971327003742311 12.999677102461199 0.05891445386739903 0.021232572206732178 21.049131162757536 -1.3232341743281029 0.17709205524754712 VNYEEFAR ddPTM_BT-474_Trastuzumab_2h_R1 5 VNYEEFAR 8 0 Q9NZT1 Q9NZT1 CALML5 Calmodulin-like protein 5 0 ;;;; 225.4 8.3728e-06 9255300000.0 4435300.0 5297500.0 4920450.0 4857490.0 4154890.0 4766340.0 4824720.0 4309920.0 5144860.0 4227290.0 False True 4411420.837608155 5473824.0850936305 5613206.590681909 5472447.735950324 4683990.613537558 4436854.134557504 4591329.861379756 4631548.11573031 3876978.1905919705 3957500.7330349516 1.1146986785837176 1.3831517551977386 1.4183715858410517 1.3828039727875376 1.1835728985312082 1.121125284329371 1.1601589414889961 1.170321480187937 0.9796531831893738 1.0 21.91615818691235 3.069406727959206 3.854536343603127 1.1113680036282545 1.3349399409542466 0.5591852818081866 0.09818534378339458 0.17764581077416824 5.285332764122724 0.029640977378633353 0.03553211621885926 1173.2936708906532 -3.069406727959206 0.22357193732599212 VPAAFPTKVPVPGPGS(ph)GGNGPER ddPTM_BT-474_Trastuzumab_2h_R1 2 VPAAFPTKVPVPGPGSGGNGPER 23 1 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 VPAAFPTKVPVPGPGS(1)GGNGPER;VPAAFPTKVPVPGPGS(1)GGNGPER 115.18 0.00036189 3610700000.0 974590.0 1203110.0 1107960.0 1128700.0 1246770.0 1172210.0 1311280.0 1229360.0 1644900.0 1375570.0 True False 969342.9157271284 1243154.7890546483 1263951.1374390419 1271593.3042717832 1405538.7693152467 1091177.8817855308 1247848.3768239492 1321101.08576359 1239536.4355307517 1287779.9449152725 0.7527240345328602 0.965347219424542 0.9814962117011393 0.9874305849323082 1.0914432818005424 0.8473325633731027 0.9689919320074901 1.0258748716967399 0.9625374586900444 1.0 20.296454656951656 4.742640080360689 3.9179913051959256 0.9842694979327663 0.7299049411985057 0.5891105354793593 0.05739648609558612 0.17092277949229626 5.3148671565603935 0.013645639541919179 0.12510316923005083 55289.17127228674 -4.742640080360689 -0.2543645567342606 VPAFLSAAEVEEHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPAFLSAAEVEEHLR 15 0 Q14894;I3NI53;I3L2W5;I3L3J9 Q14894 CRYM Ketimine reductase mu-crystallin 0 ; 194.48 5.0079e-08 196672000.0 155675.0 191284.0 177397.0 190491.0 163087.0 186318.0 201179.0 151057.0 187168.0 158320.0 False True 154836.86309711856 197650.77230638012 202372.95563763435 214607.14106851787 183855.162757618 173438.27520539536 191447.2031915881 162329.64039190384 141042.9543227063 148215.88205542852 1.0446711981865344 1.3335330166065764 1.3653931874989795 1.4479362001722658 1.2404552076872666 1.17017334984745 1.291678061329435 1.0952243318377797 0.9516048642476806 1.0 17.177340522181396 1.5633397052395293 2.4710867794502107 0.9744528940024605 1.2805555233302695 0.5663489050029545 0.1049599136616783 0.18816064094607196 2.512137096196045 0.08062087795915619 0.029439200887004267 36.58808718111682 -1.5633397052395293 0.30610262932780896 VPAQESQDVSGSRPAAPLIGAPANSEDTHLVDPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VPAQESQDVSGSRPAAPLIGAPANSEDTHLVDPK 34 1 P46527;E7ES52 P46527 CDKN1B Cyclin-dependent kinase inhibitor 1B 0 161.61 1.9913e-14 160560000.0 50149.0 49265.0 49259.0 42077.0 53730.0 44826.0 51701.0 47371.0 68620.0 48762.0 False True 49879.00335607771 50904.75574367862 56194.23903309659 47403.94388574802 60572.19701733937 41727.2841290539 49200.025113000316 50906.06456506401 51709.5204608913 45649.967412751444 1.092640503006032 1.1151104508665948 1.2309809232722433 1.0384222940870411 1.3268836858012671 0.9140704034193501 1.0777669273704067 1.1151391216731597 1.1327394824480692 1.0 15.478326209890849 2.729716498995166 24.999551669467106 1.0624247922772483 1.1553681828470925 0.2578172721023342 0.09393129275065958 1080.6083868601345 3054535.692435898 0.029195358564427693 0.0279028516473796 536.6813443657064 -2.729716498995166 0.09294339056984424 VPAS(ph)PLPGLER ddPTM_BT-474_Trastuzumab_2h_R1 6 VPASPLPGLER 11 0 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER 151.68 3.4934e-05 14035430000.0 2370445.0 3023480.0 2898164.0 2846785.0 2801270.0 3056430.0 3176930.0 2754567.0 3137520.0 2621270.0 True False 2357682.7875011954 3124114.7040677457 3306200.2999069314 3207187.6891125552 3157995.130071884 2845146.188162316 3023249.758848845 2960126.776947807 2364320.236614042 2453978.304417847 0.9607594261353929 1.2730816317501525 1.3472817970537254 1.3069340031811694 1.2868879583762456 1.1594015248791145 1.2319790087003417 1.2062562947760178 0.963464197037767 1.0 21.226691063538055 1.2742826373644203 5.239722218728979 0.9792792166728933 1.2313821316687663 0.4693697338140346 0.10170737420618879 0.14482967967111654 9.252177897034557 0.07732143947220341 0.025387832598374675 18.80540267829901 -1.2742826373644203 0.252102914995873 VPCNVEGIS(ph)PELEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VPCNVEGISPELEK 14 0 Q86VQ1;H7C2L5;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 VPCNVEGIS(1)PELEK 185.02 1.2854e-06 158720000.0 144580.0 137830.0 131930.0 121930.0 111440.0 158770.0 162920.0 135460.0 227040.0 168930.0 True False 143801.5973443482 142417.58823000573 150504.59724388283 137366.3254982355 125631.22344337069 147794.60360437882 155038.9371851612 145568.71305194256 171089.0341801333 158148.74277175072 0.9092806861695439 0.9005293733858568 0.951664835306972 0.8685894246816138 0.7943864822541702 0.9345291085727088 0.9803361978597719 0.920454443713382 1.0818235490310457 1.0 17.270922561407072 1.6887954576619526 1.2089318793372152 1.027426371034565 0.8919340304038217 0.49930576792526093 0.05216688136743345 0.39530461565099473 1.0909682270487178 0.04558893089276871 0.017296055225816384 48.8422269929139 -1.6887954576619526 -0.13549234063074334 VPDEEENEES(ph)DNEKETEK ddPTM_BT-474_Trastuzumab_2h_R1 3 VPDEEENEESDNEKETEK 18 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 VPDEEENEES(1)DNEKETEK;VPDEEENEES(1)DNEKETEK;VPDEEENEES(1)DNEKETEK 216.67 5.3505e-19 1764840000.0 1590240.0 1292070.0 1155310.0 904770.0 1079290.0 1992870.0 1848150.0 2000080.0 3463810.0 1868740.0 True False 1581678.3245322746 1335075.768877191 1317967.6058654638 1019313.7892318422 1216731.1840469798 1855107.587611379 1758747.923881385 2149336.125800451 2610200.438176041 1749475.413291193 0.9040871980914262 0.7631291978922902 0.7533501733448446 0.5826396767212992 0.6954834430956703 1.0603793420117096 1.005300166278272 1.2285603498462556 1.491990352276865 1.0 20.73849095875354 2.3165948626714608 1.4725171003766693 1.2484049071573582 0.7356024870416332 0.6711124746770303 0.1478329883328825 0.23027275498277497 0.9968325870447535 0.0807135888103771 0.05183638719997819 207.29788095958338 -2.3165948626714608 -0.512802420115725 VPDGKPENEFAFNAEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VPDGKPENEFAFNAEFK 17 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ; 208.32 4.8199e-12 1367680000.0 1638750.0 1135010.0 1081500.0 878980.0 979280.0 1437700.0 1363620.0 1361820.0 2116200.0 1520680.0 False True 1629927.1520822393 1172788.1217219655 1233765.799433483 990258.7778761511 1103985.5033526905 1338315.1829817696 1297656.491065734 1463445.9235818428 1594690.8656271945 1423628.900480351 1.1449101317992916 0.8238018498544469 0.8666344150622359 0.6955877177978228 0.7754728096487725 0.9400730643570137 0.9115131693574694 1.0279686813663709 1.1201590984062806 1.0 20.44114169511569 1.8647746035095025 1.724914227186054 1.0650048511271666 0.8568785815401845 0.31975970389759334 0.1141058873690422 0.40223345772305735 2.2556903641157913 0.07897937069870067 0.035050089733771696 73.24442998422148 -1.8647746035095025 -0.2081262695869821 VPDGKPENQFAFNGEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VPDGKPENQFAFNGEFK 17 1 Q9H2U2-2;Q9H2U2;Q9H2U2-3;Q9H2U2-6;D6R967;Q9H2U2-4 Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial 0 ; 174.02 1.2817e-09 916320000.0 956900.0 802800.0 768180.0 656060.0 776270.0 1233340.0 867340.0 935560.0 1382110.0 935640.0 False True 951748.1567215853 829520.7126971522 876333.0668597451 739117.1287326523 875123.3831872327 1148082.108770073 825383.45063944 1005376.2378774206 1041507.5098251593 875926.6541582942 1.0865614743007797 0.9470207451265027 1.0004639802882143 0.8438116653076317 0.9990829472225236 1.3107057575195056 0.9422974477612822 1.1477858712308722 1.189035069181651 1.0 19.740450545048397 2.978758669096262 24.974938777473305 1.1181086065638632 0.9639970453760838 0.3017437222500018 0.10906363698771893 879.8442685085954 1034496.4957090999 0.03151762945379587 0.03374682242631232 952.2668566207523 -2.978758669096262 -0.15411156118777947 VPEASSEPFDTSS(ph)PQAGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 VPEASSEPFDT(0.001)S(0.123)S(0.876)PQAGR 190.8 2.7075e-14 399900000.0 202710.0 209930.0 180720.0 181220.0 184300.0 219510.0 231870.0 195020.0 266890.0 200520.0 True False 201618.63188319842 216917.39314463528 206163.80515360078 204162.43341909474 207769.5125683167 204335.79037095918 220653.56227058225 209573.38269149425 201118.53564277562 187722.64192619108 1.0740240485347046 1.1555206709157813 1.0982362225365463 1.0875748994592112 1.1067898386493393 1.088498373314499 1.175423273434107 1.1163990690792347 1.0713600319020204 1.0 17.51824314391623 0.9444393252142106 3.2077094002142252 1.0002611175057357 1.11481560074591 0.5773078015937689 0.02965309918476344 0.19180018220483708 4.910348252655067 0.027910906952374914 0.0072798069375093226 8.799121715756145 -0.9444393252142106 0.11455448324017437 VPEEAAQDRPMS(ph)PGDCPPETTETPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VPEEAAQDRPMSPGDCPPETTETPK 25 1 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 1 VPEEAAQDRPMS(1)PGDCPPETTETPK;VPEEAAQDRPMS(1)PGDCPPETTETPK 145.95 1.6314e-07 674010000.0 374370.0 413190.0 322050.0 351590.0 355690.0 417780.0 398190.0 389470.0 551780.0 442270.0 True False 372354.4335164171 426942.7793713704 367391.840691219 396101.25795066496 400985.0131601983 388899.8519483361 378928.02846648265 418534.2290885875 415801.21247319423 414043.9499536033 0.8993113739692179 1.0311532855852923 0.8873257071680144 0.9566647646827131 0.9684600226742394 0.9392719106073527 0.9151879371959047 1.0108449335764653 1.0042441449024622 1.0 18.65942438954006 1.67247498711535 7.476331078586918 1.0055676438056649 0.9453111412003942 0.3581211271383651 0.038150612839163274 0.13379409856389368 13.924471722711848 0.01777490683437059 0.00920091958693921 47.040831211051234 -1.67247498711535 -0.06025650260527071 VPEEDLKR ddPTM_BT-474_Trastuzumab_2h_R1 4 VPEEDLKR 8 1 Q99832-3;Q99832;Q99832-4;Q99832-2 Q99832-3 CCT7 T-complex protein 1 subunit eta 0 ;;; 128.69 0.0018004999999999996 5669700000.0 4459410.0 5439160.0 4966050.0 5371190.0 5304030.0 5050380.0 4785600.0 4218520.0 5532940.0 4998100.0 False True 4435401.0320470305 5620199.1525583435 5665226.674319605 6051182.103279482 5979466.7810511505 4701259.117915743 4554102.245232667 4533327.383610516 4169421.0745975473 4679116.978911306 0.947914115427612 1.201123882537769 1.2107469635516013 1.293231635488501 1.2779049568541452 1.0047321191379124 0.9732824090010833 0.9688424982837871 0.8910700658669256 1.0 22.157804866153544 2.608374976898386 5.0941479377448635 0.9613269622250545 1.1935927051879063 0.5869644230448412 0.09207451810253435 0.16419164921336096 6.128341975012785 0.031279560218087483 0.02931872903417042 405.85880928809155 -2.608374976898386 0.23226574296285174 VPFDAATLHTSTAMAAQHGMDDDGTGQK ddPTM_BT-474_Trastuzumab_2h_R1 4 VPFDAATLHTSTAMAAQHGMDDDGTGQK 28 0 P06396-2;A0A0A0MS51;A0A0A0MT01;P06396-4;P06396-3;P06396 P06396-2 GSN Gelsolin 0 ;;; 359.82 1.3297999999999993e-111 4446560000.0 1115610.0 1997180.0 2102690.0 2258550.0 2237840.0 2411150.0 2512090.0 1861270.0 1796170.0 2272100.0 False True 1109603.6797159228 2063654.9289791952 2398730.4750908846 2544482.198425653 2522815.659283132 2244472.8757365895 2390570.6095842808 2000167.418737551 1353527.9709449017 2127092.6327573247 0.5216527304114428 0.9701763323321297 1.1277038141876496 1.1962253825905416 1.1860393950087806 1.0551834185176534 1.1238676552066342 0.9403292493871119 0.6363277038811138 1.0 21.02045143191736 -3.2060913057517566 8.346946619821345 0.9849333523297216 0.9959084244872122 0.0 0.21714476007993158 0.0 0.0 0.0 0.04853369077396591 0.0006221694669679464 3.2060913057517566 0.010975072157490606 VPFS(ph)PGPAPPPHMGELDQER ddPTM_BT-474_Trastuzumab_2h_R1 2 VPFSPGPAPPPHMGELDQER 20 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VPFS(1)PGPAPPPHMGELDQER;VPFS(1)PGPAPPPHMGELDQER 144.56 9.9847e-08 269650000.0 154133.0 157447.0 147819.0 158835.0 147067.0 144888.0 110153.0 115601.0 130351.0 117857.0 True False 153303.16505378616 162687.5282162785 168630.63033421923 178943.4947142806 165795.11071559726 134872.2335896659 104824.4785646763 124227.73362998378 98227.74266391194 110335.26535754575 1.3894303381335174 1.4744834998047378 1.5283475304814382 1.6218159636849305 1.5026484069108068 1.2223855460229072 0.9500541664987026 1.1259114049113756 0.8902660662989398 1.0 16.75153445326186 2.551705362585366 2.810984288909206 1.01380447603286 1.511049342852479 0.9012160905876828 0.07971118492399358 0.08164861663541187 1.270490025362249 0.02956825180653021 0.026465096455629507 356.20938910923405 -2.551705362585366 0.497244866819619 VPFSPGPAPPPHMGELDQER ddPTM_BT-474_Trastuzumab_2h_R1 2 VPFSPGPAPPPHMGELDQER 20 0 Q6Y7W6;I1E4Y6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6;Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 ; 113.53 0.00013746 419330000.0 89846.0 94307.0 94788.0 95202.0 100385.0 103787.0 100634.0 94563.0 124359.0 113196.0 False True 89362.27911882906 97445.95148521467 108133.3264879343 107254.56343871914 113168.43472148909 96612.44897831872 95765.9489607876 101619.77124118427 93712.3907752256 105971.73436802861 0.8432652315426237 0.9195466325652007 1.0203978177086233 1.0121053890298275 1.0679115086336806 0.9116813040239005 0.9036933247520759 0.9589327932321043 0.8843149669493224 1.0 16.693319983329072 -0.03949424428387262 7.940823623786712 0.999999999000494 0.9513905980445294 0.05179834174018505 0.06567984529200582 8960181.136621337 1128368.7210483262 0.06590652800294669 0.015984680937842794 0.913073536200445 0.03949424428387262 -0.048609400955964555 VPGEDGTLPPTQGS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 VPGEDGT(0.001)LPPT(0.044)QGS(0.955)PLR 98.062 0.0020146 138360000.0 56069.0 69465.0 55400.0 72330.0 69240.0 74535.0 74327.0 66051.0 73818.0 64064.0 True False 55767.130733851496 71777.10053252081 63199.83845456768 81486.97058383802 78057.30358236693 69382.57088651741 70731.51905328665 70980.06102018198 55626.54301052274 59975.38067205013 0.9298337102483825 1.1967760725855725 1.0537630232002884 1.3586736702750561 1.3014890894847355 1.1568508629550265 1.1793425612427855 1.183486627759918 0.9274896196940015 1.0 15.872082789082516 1.243571766235043 24.98601937695168 0.963744768614493 1.1778888743635096 0.34493160021796954 0.11329625460736312 119.06526874424598 593693.0979469244 0.08076495394005156 0.02744196693230423 17.521519496523158 -1.243571766235043 0.21414410574901666 VPGGGEQPAQPNGWQYHS(ph)PSRPGSTAFPSQDGETGGHR ddPTM_BT-474_Trastuzumab_2h_R1 3 VPGGGEQPAQPNGWQYHSPSRPGSTAFPSQDGETGGHR 38 1 A0A1B0GUN5;A0A5F9ZH45;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 VPGGGEQPAQPNGWQY(0.238)HS(0.521)PS(0.115)RPGS(0.06)T(0.06)AFPS(0.005)QDGET(0.001)GGHR;VPGGGEQPAQPNGWQYHS(0.999)PS(0.001)RPGSTAFPSQDGETGGHR;VPGGGEQPAQPNGWQY(0.004)HS(0.974)PS(0.021)RPGSTAFPSQDGETGGHR 272.12 1.5187e-76 1568200000.0 137187.0 155255.0 162414.0 154224.0 148992.0 181646.0 178967.0 133760.0 158119.0 174593.0 True False 136448.40043490843 160422.56882137046 185280.47947220507 173748.74258705712 167965.2480552286 169089.2395686905 170309.6824896679 143741.8504195172 119152.69113604871 163450.32526341238 0.8348004215654613 0.9814759839898607 1.1335583405760237 1.0630064045883547 1.0276225990039487 1.0344992541078801 1.0419660053609632 0.8794222353970021 0.7289841176150936 1.0 17.31849272248384 1.652522853368398 4.702390665093772 0.8469677338411261 1.0225713165066495 0.33322694892460525 0.09438286861807521 0.15825604995071726 7.9070053416963 0.051576802827761 0.024364816337630282 44.92859662959273 -1.652522853368398 0.17560358266552334 VPGGGEQPAQPNGWQYHS(ph)PSRPGSTAFPSQDGETGGHRR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPGGGEQPAQPNGWQYHSPSRPGSTAFPSQDGETGGHRR 39 2 A0A1B0GUN5;A0A5F9ZH45;Q5VTI5;Q9Y2H5 A0A1B0GUN5;Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 VPGGGEQPAQPNGWQYHS(0.873)PS(0.127)RPGSTAFPSQDGETGGHRR;VPGGGEQPAQPNGWQYHS(0.982)PS(0.018)RPGSTAFPSQDGETGGHRR 194.2 7.972899999999998e-25 1124560000.0 6794.5 7378.1 0.0 5971.8 4126.7 16453.6 12183.8 0.0 9045.7 0.0 True False 6757.919166939912 7623.675598344364 0.0 6727.829267697555 4652.210784132781 15316.201359608278 11594.423047364135 0.0 6816.5084411699845 0.0 0.0 VPGGS(ph)PLGVSLVYSDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VPGGSPLGVSLVYSDKK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 VPGGS(0.996)PLGVS(0.004)LVYSDKK 72.568 0.017221 262400000.0 301040.0 288940.0 232510.0 210460.0 227940.0 288880.0 287670.0 280420.0 362220.0 300930.0 True False 299419.2340886883 298557.1932320816 265245.3869868509 237104.21442104975 256966.80789377168 268910.40555037436 273754.3030938824 301346.36434390757 272955.7344993304 281724.3897608653 1.062809060808838 1.0597491877984166 0.9415066519870636 0.8416176342499481 0.9121212689887855 0.9545158861773815 0.9717096319784448 1.069649541524246 0.968875058105626 1.0 18.103924942174793 -0.47222864609147086 8.166330633451231 1.0000000025558602 0.9774683458987079 0.010512181855320435 0.06870463588838889 0.0 0.0 0.07421406172932775 0.0174924221027349 0.3371097813570091 0.47222864609147086 -0.022531656657152288 VPGPAEGPAEPAAEAS(ph)DEAERR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPGPAEGPAEPAAEASDEAERR 22 1 Q24JP5-4;Q24JP5;Q24JP5-2;H0YFQ2 Q24JP5-4 TMEM132A Transmembrane protein 132A 1 VPGPAEGPAEPAAEAS(1)DEAERR 162.9 9.6226e-12 774270000.0 104970.0 106580.0 129300.0 115230.0 157510.0 113940.0 107030.0 85258.0 103500.0 105360.0 True False 104404.85318326349 110127.45087102948 147504.3161042529 129818.10618520177 177567.96486508712 106063.59598591003 101852.55000569482 91620.38489135168 77993.81182894568 98635.83459676588 1.0584880597409856 1.1165054903346494 1.4954434836716974 1.3161353246100918 1.8002378708610765 1.0753048972466208 1.032612036204481 0.928875243626273 0.7907249140010113 1.0 16.5898242553904 2.49255476031664 22.956365487719765 0.9501902578271367 1.3582029235844948 0.4993460163422816 0.1998509653170124 210.12636441891703 312550.7733743595 0.0685524269676424 0.06264960034884702 310.8527833201822 -2.49255476031664 0.40801266575735806 VPHDPVALEEHFRDDDEGPVSNQGYMPYLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 VPHDPVALEEHFRDDDEGPVSNQGYMPYLNR 31 1 Q9UH65;E7EMB1;E9PJK8 Q9UH65 SWAP70 Switch-associated protein 70 0 ;;; 168.11 6.9851e-13 2111520000.0 297774.0 324369.0 348639.0 305928.0 294183.0 354890.0 305578.0 275285.0 413789.0 363952.0 False True 296170.8178698013 335165.42607979896 397724.3407754877 344658.4534324952 331645.4612907493 330357.28962120076 290796.0247186791 295828.1645689059 311816.2454385275 340724.2717650163 0.8692389782963812 0.9836852078179771 1.1672908968744735 1.0115465260138323 0.9733543770532195 0.9695736905090071 0.853464366398967 0.8682333167415985 0.9151571263862719 1.0 18.378245197062647 2.562320216998703 2.301812404306549 0.8944087687560099 1.0121746232707063 0.21293858901567475 0.07838422646627827 0.38584650487430877 4.06189008643043 0.030588347645566994 0.027080546291888222 365.02298899187025 -2.562320216998703 0.11776585451469634 VPHLIDHQISSGENTR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPHLIDHQISSGENTR 16 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 165.86 3.9771e-09 85952000.0 27065.0 40952.0 35598.0 49584.0 42015.0 34134.0 46299.0 22055.0 39537.0 37267.0 False True 26919.28504720417 42315.06256399325 40609.888976637216 55861.329316037954 47365.36120758449 31774.39692279312 44059.34049064433 23700.85609302075 29793.636118657232 34888.58815411609 0.7715785152523656 1.2128625663231658 1.1639877428472591 1.6011347054021599 1.357617596858714 0.9107389723663677 1.2628582244720696 0.6793297564328228 0.8539650841429143 1.0 15.090467596334594 1.7460808384110942 24.84300865512134 0.8250035817566485 1.1957183357559913 0.31847655778314354 0.22587022238590618 1.7594807769158458 5829.3278253615845 0.1069620427837246 0.0593151924693097 55.7289471647195 -1.7460808384110942 0.37071475399934284 VPHSLDLSSPNMANTVNAALKPLETLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPHSLDLSSPNMANTVNAALKPLETLSR 28 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 171.72 1.8108e-12 316020000.0 179132.0 219070.0 230500.0 214064.0 185487.0 243900.0 265360.0 209906.0 276840.0 261670.0 False True 178167.5732154364 226361.61251938826 262952.3964580842 241164.48045152362 209107.6699824161 227039.76707884346 252523.52302635866 225570.25160107095 208616.49146594518 244969.9965730419 0.7273036523161022 0.9240381095074015 1.073406540133908 0.9844653787208443 0.8536052288349 0.9268064263173869 1.030834496301528 0.9208076693335521 0.8516001730185055 1.0 17.90224553613016 4.721165051260693 4.50181483695875 0.9536640750012056 0.7153156731037386 0.5010901562595974 0.06767312216418186 0.1499612735049163 7.575977013242083 0.016608458390758092 0.10938797267755915 52621.72143899827 -4.721165051260693 -0.2383484018974671 VPKPEPIPEPKEPS(ph)PEK ddPTM_BT-474_Trastuzumab_2h_R1 6 VPKPEPIPEPKEPSPEK 17 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK 185.9 2.8859e-10 9325080000.0 4253250.0 2878580.0 2478010.0 2755800.0 2510810.0 4200710.0 4770470.0 4063660.0 8947520.0 3990020.0 True False 4230350.974580501 2974391.7951616445 2826892.268750965 3104683.997441462 2830546.7707631863 3910324.8051077053 4539704.141134881 4366910.944047371 6742523.586625389 3735373.5075720116 1.132510836200213 0.7962769423545534 0.7567897194271321 0.8311575779899726 0.7577680692507343 1.0468363597859889 1.2153280339790395 1.1690694210887247 1.8050466902325977 1.0 21.832821077554282 2.2113940064903623 1.5283002083547985 1.3495609203147982 0.8448578323889298 0.4820252009553302 0.21645672243426736 0.3242183136420493 1.4823288928313998 0.11990510084685085 0.07003799998337241 162.70241771654992 -2.2113940064903623 -0.5047030879258685 VPLAPITDPQQLQLS(ph)PLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VPLAPITDPQQLQLSPLK 18 0 P31350;P31350-2;A0A286YFD6 P31350 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK 238.94 7.054999999999999e-24 4316861000.0 1517704.0 1060545.0 999992.0 855469.0 782961.0 1834621.0 1872430.0 1339975.0 2270390.0 1775857.0 True False 1509532.8502967674 1095844.5992120095 1140782.1815137197 963771.2876867885 882666.442376569 1707797.9685032999 1781853.4075227808 1439970.7387551796 1710882.8061673406 1662520.2858723297 0.907978605208243 0.6591466032169444 0.6861763980913759 0.5797049791672735 0.5309207050748443 1.0272343640048955 1.0717784454508696 0.8661372441537591 1.0290898828158568 1.0 20.664940513636562 2.7277752286191026 24.989574440914428 0.9864294912566927 0.6676005464809316 0.706523205108408 0.10489468732467123 417.67154848271815 967736.8925414789 0.034948572534476155 0.03325384336738837 534.2877643992351 -2.7277752286191026 -0.31882894477576107 VPLHCVDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPLHCVDR 8 0 Q8NFH3 Q8NFH3 NUP43 Nucleoporin Nup43 0 111.04 0.0033105 107110000.0 102850.0 95604.0 97801.0 90296.0 83140.0 104650.0 95596.0 84564.0 104510.0 91067.0 False True 102296.26702770927 98786.12134616161 111570.53069846898 101727.4643417425 93727.38619061229 97415.79181960231 90971.65626781649 90874.59508729118 78754.9108622523 85255.0260936187 1.1998854696892305 1.1587131676868458 1.3086680728471443 1.1932136907686286 1.099376664170979 1.1426398686762451 1.0670532921768197 1.0659148117261923 0.9237568090797532 1.0 16.37949726830907 2.2400169035869593 0.7094527649898268 0.972740236457445 1.2189849635968417 0.7532535309010073 0.05168149672249398 0.3528394306988015 0.343889024052106 0.044051209985475445 0.02845186132771955 173.78684686580678 -2.2400169035869593 0.2462447271393967 VPLS(ph)PLSLLAGPADAR ddPTM_BT-474_Trastuzumab_2h_R1 5 VPLSPLSLLAGPADAR 16 0 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 VPLS(0.999)PLS(0.001)LLAGPADAR;VPLS(0.996)PLS(0.004)LLAGPADAR;VPLS(0.993)PLS(0.007)LLAGPADAR;VPLS(1)PLSLLAGPADAR;VPLS(0.991)PLS(0.009)LLAGPADAR 172.57 4.7465000000000005e-09 2677448000.0 225489.2 259302.0 228922.2 238568.8 182989.7 233883.4 188555.2 163347.9 191429.0 169219.6 True False 224275.1912014053 267932.71031863097 261152.4559325675 268771.58561899007 206292.3536300732 217715.59106030333 179434.06462518702 175537.74976182933 144253.88796718096 158419.86025181174 1.4157012311771713 1.6912823297075645 1.648483059620556 1.696577595711623 1.3021874486075615 1.374294805678024 1.1326488000934527 1.1080539364370625 0.9105795683564316 1.0 17.273393684164514 2.44403911006565 0.8984935535637704 0.9766643803868583 1.6226352354468465 0.8460165045542993 0.1074218904288723 0.20759838084564047 0.3347743960276654 0.07356690379515582 0.05081475986818263 277.99636040361264 -2.44403911006565 0.6459708550599882 VPLVAEKPLKEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VPLVAEKPLKEPK 13 2 P41250 P41250 GARS Glycine--tRNA ligase 0 ; 150.26 2.4837e-05 4847300000.0 7669500.0 6059800.0 5424000.0 5453500.0 5708500.0 8466500.0 7511500.0 8445500.0 12669000.0 8329300.0 False True 7628208.264161549 6261496.779773539 6187652.053746846 6143912.540840052 6435443.638069644 7881230.782997243 7148140.048283431 9075746.095380044 9546894.705902534 7797716.942927502 0.9782617553308732 0.8029910325807211 0.7935209881347413 0.7879117164431771 0.8252984412195886 1.0107100373969702 0.916696528048093 1.1638978641834017 1.2243192175065458 1.0 22.894620355189947 2.145785820060513 1.3501075095809876 1.1425599244418163 0.8343538664063355 0.6367772179788098 0.0887835303158996 0.25027959486180235 0.8694850970564941 0.056355863357292556 0.02999035514544992 139.8897261713287 -2.145785820060513 -0.30820605803548085 VPMYEEQWSYYDDKQPYPSRPPFDNQHS(ph)QDLDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VPMYEEQWSYYDDKQPYPSRPPFDNQHSQDLDSR 34 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 VPMYEEQWSYYDDKQPYPS(0.001)RPPFDNQHS(0.985)QDLDS(0.014)R;VPMYEEQWSYYDDKQPYPSRPPFDNQHS(0.999)QDLDS(0.001)R;VPMYEEQWSYYDDKQPYPSRPPFDNQHS(1)QDLDSR 237.91 2.6369e-47 998170000.0 284806.0 211952.0 193589.0 239192.0 210491.0 229618.0 242842.0 232771.0 319007.0 277956.0 True False 283272.636140921 219006.69419231018 220844.64849424738 269473.68267509167 237295.78117209714 213745.04812263153 231094.80471347194 250141.55400718795 240391.9993247966 260216.61010989614 1.0886032064643671 0.8416322620597434 0.8486954326281441 1.0355744875828103 0.9119163495054411 0.821412007605362 0.888086293245749 0.9612820407642185 0.9238149679348789 1.0 17.989353529337823 0.7025865103384513 1.2327873794590833 0.9991334330883208 0.9176988940088698 0.06843053574444724 0.08102212876122772 2.693883748612821 6.770836411366807 0.07504516617121006 0.022831128943227638 5.041810406608285 -0.7025865103384513 -0.08143453907945097 VPNSNPPEYEFFWGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPNSNPPEYEFFWGLR 16 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 0 73.624 0.08037899999999999 86915000.0 13542.0 19559.0 18199.0 20069.0 19655.0 23646.0 18870.0 23035.0 27000.0 18325.0 False True 13469.09137665764 20210.009491334815 20761.261011456285 22609.733342279076 22157.94774568781 22011.40767669673 17957.18600959974 24753.988669359922 20346.211781464073 17155.482811178183 0.785118759110728 1.1780495899635282 1.2101822630097385 1.3179304593833412 1.2915956950654934 1.283053815445784 1.046731602208198 1.4429199656934575 1.1859888762913087 1.0 14.066382108155059 4.800883419248331 2.359846130329847 1.246970589932764 0.6265960124194063 0.5189654368888008 0.1236663031196302 0.5158446905321381 2.989882703478401 0.02899940601433971 0.6966908722008025 63224.211135552534 -4.800883419248331 -0.6203745775133578 VPPELLGGS(ph)PPWK ddPTM_BT-474_Trastuzumab_2h_R1 1 VPPELLGGSPPWK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 VPPELLGGS(1)PPWK 92.265 0.006453399999999999 263300000.0 295710.0 283220.0 248020.0 227900.0 249610.0 320960.0 296530.0 354530.0 389820.0 347330.0 True False 294117.93021646934 292646.8064898949 282939.06017151417 256752.11663288626 281396.35394561844 298772.7906585717 282185.71104539547 380986.82886686275 293754.0843203822 325163.1020358263 0.9045243091083058 0.9000000450778429 0.8701450392127827 0.789610244905947 0.8654006318177342 0.9188397723726139 0.8678282046106953 1.1716791557268569 0.9034053448291207 1.0 18.310804030957673 1.7716560537359562 24.99999999998618 1.0416637793125971 0.8728091755306541 0.492618037572222 0.06973387534751943 22.378245633062793 16912.50090776696 0.030897232541802343 0.017140286074825595 59.10933232137466 -1.7716560537359562 -0.16885460378194306 VPPS(ph)PDDLPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPPSPDDLPSR 11 0 A0A087X1N4;Q8IYJ3-2;Q8IYJ3 A0A087X1N4 SYTL1 Synaptotagmin-like protein 1 1 VPPS(1)PDDLPSR 98.407 0.0058151 118690000.0 46386.0 68273.0 50418.0 50438.0 58990.0 57514.0 59984.0 50197.0 48413.0 66986.0 True False 46136.26292996911 70545.42553310005 57516.41615888802 56823.44562847534 66502.02683887682 53538.192553393215 57082.34475886758 53942.9550352012 36482.26485096373 62710.89613040005 0.7356977140628654 1.1249309113109944 0.917167824221317 0.9061175829845831 1.0604540987676776 0.8537303061666787 0.9102460382669616 0.8601847264793199 0.5817532056168211 1.0 15.936428515201051 1.5619876814819027 3.9748038100658003 0.7725988599433077 0.9372745370151534 0.13182277863795433 0.13774045330928117 0.2675575596986085 9.517231613840826 0.0780938546372556 0.03307051836193449 36.47436010323023 -1.5619876814819027 0.16467567707184572 VPPVPDYVAHPER ddPTM_BT-474_Trastuzumab_2h_R1 1 VPPVPDYVAHPER 13 0 Q9Y5U2-2;Q9Y5U2;A6NCC9;E9PME3;C9JHT9;C9JJV1 Q9Y5U2-2 TSSC4 Protein TSSC4 0 67.275 0.061555 0.0 166650.0 213740.0 231770.0 190880.0 224800.0 341110.0 222840.0 155970.0 249770.0 228640.0 False True 165752.77491655565 220854.2066914416 264401.2014190461 215045.38842863278 253426.94750600972 317529.8685865695 212060.37786853212 167609.27339961214 188217.53024652903 214047.9994514479 0.7743719882518829 1.0317975746441748 1.2352425722110976 1.0046596510116468 1.183972511565071 1.4834516996202725 0.9907141314657948 0.7830452694215936 0.8793239400923346 1.0 17.707574826229703 2.0021158206767917 24.99769481582548 0.869232626778394 1.1279302480478441 0.25526009942308914 0.17751702675446474 82.96864535961468 980235.9238973958 0.06895902864051331 0.0506011762162778 100.48837439416177 -2.0021158206767917 0.2586976212694502 VPQIEVETHK ddPTM_BT-474_Trastuzumab_2h_R1 3 VPQIEVETHK 10 0 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 180.88 1.9487e-06 1535210000.0 745010.0 786460.0 724060.0 725820.0 694300.0 803360.0 849490.0 728520.0 1043910.0 849090.0 False True 740998.9489383915 812636.8456748904 826001.3543576592 817708.7375799996 782714.9895614876 747825.6141060267 808396.9233330613 782885.8617496018 786652.3681773389 794900.3492574784 0.9321909968093026 1.0223128552327092 1.0391256654110574 1.0286933932584463 0.9846705820328633 0.9407790735084913 1.0169789509945368 0.9848855425474409 0.9896238804174082 1.0 19.60041448622614 3.20049059545258 24.459272836270763 0.9854215869019239 1.0091719549496747 0.07431309657993068 0.03255291858843575 301.443685621458 193670.99635678172 0.009504317427213742 0.011360061377169325 1586.6845592892535 -3.20049059545258 0.02375036804775077 VPS(ph)EGAYDIILPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSEGAYDIILPR 13 0 A8MXZ4;J9JIE0;A0A0C4DFY5;Q9NQ84;Q9NQ84-2 A8MXZ4 GPRC5C G-protein coupled receptor family C group 5 member C 1 VPS(1)EGAYDIILPR 133.04 0.0001173 141540000.0 30854.0 49314.0 38883.0 47724.0 37172.0 37692.0 36630.0 28704.0 22859.0 42007.0 True False 30687.885492201654 50955.38667905752 44357.38842290536 53765.85350674801 41905.63386429444 35086.44075742424 34858.06695981124 30846.038235958626 17225.705744906936 39326.077295997915 0.7803444330646387 1.2957149602165656 1.127938291150627 1.367180690361395 1.0655940471479224 0.8921927425747819 0.8863855577926821 0.7843660074150779 0.4380224759070984 1.0 15.263198666825646 2.4546613971058195 1.4777508737544365 0.7383218616044075 1.154719786239056 0.4235373017625783 0.19577978279106067 0.35724925651437167 1.579286431532212 0.09394952759224186 0.06939802418667138 284.8796303269258 -2.4546613971058195 0.4163979246346484 VPS(ph)GIFDVNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSGIFDVNSR 11 0 Q5VZ89-7;Q5VZ89-3;Q5VZ89;Q5VZ89-5;X6RAE7 Q5VZ89-7 DENND4C DENN domain-containing protein 4C 1 VPS(1)GIFDVNSR 86.59200000000001 0.015058000000000004 50190000.0 17653.0 27837.0 21395.0 21930.0 24642.0 24224.0 22441.0 18539.0 23715.0 23418.0 True False 17557.95820943269 28763.537717178162 24407.230031326275 24706.335751466453 27780.012635422994 22549.4518971624 21355.443097055006 19922.474319134526 17870.756014719285 21923.443190841517 0.8008759416389255 1.3119990991740789 1.113293647300911 1.1269368381782057 1.267137301089094 1.0285543060399562 0.9740916566416086 0.9087292605322648 0.8151436733343403 1.0 14.42018677840663 2.2838041716352895 2.3582532947564823 0.9071672391707459 1.13416543884507 0.323582436598142 0.13495861826404196 0.3088451219256565 3.5218395164435394 0.05516459381821673 0.039646689333211395 192.222478025849 -2.2838041716352895 0.226998199674324 VPS(ph)PDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSPDHR 7 0 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 VPS(1)PDHR 72.643 0.053548 389360000.0 350400.0 388090.0 291560.0 336760.0 330040.0 385220.0 404710.0 309620.0 470910.0 355780.0 True False 348513.4853330996 401007.34104464133 332609.1137150498 379393.7814712195 372068.63769965933 358590.6481103408 385132.6311576632 332725.4166185027 354860.5403707128 333073.8158014171 1.0463550984772931 1.203959368825699 0.9986048075101636 1.139068168893285 1.1170756152188541 1.0766101419516483 1.1562981323854176 0.9989539880759581 1.0654110996893411 1.0 18.34548241716641 1.7061710652424973 9.682182776706023 1.0250829879664665 1.1056818928874683 0.3133936774879251 0.0568073533347175 0.12994527646559684 25.63474574401259 0.024823458411886802 0.013371758801450103 50.83596420665553 -1.7061710652424973 0.08059890492100186 VPS(ph)PDHRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSPDHRR 8 1 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 VPS(1)PDHRR 76.22800000000002 0.022262 86355000.0 38231.0 68451.0 57500.0 51003.0 56235.0 52704.0 59076.0 33565.0 78093.0 59194.0 True False 38025.16854386342 70729.35015549662 65595.50020104052 57459.974570544626 63396.19391904113 49060.69653187114 56218.26818776441 36069.79073961647 58848.026542587955 55416.1882414669 0.6861743788326801 1.2763301194103271 1.183688418178799 1.0368806732100062 1.1440013456501676 0.8853134451993927 1.0144737480463755 0.6508890611972138 1.0619284438360752 1.0 15.758019859147963 2.7264175405670703 22.48363232189387 0.8881525781328903 1.08211799561073 0.11842571954198111 0.1804575307008807 305.548859489546 565739.0524757481 0.05661358418053969 0.05385523293573864 532.620086219969 -2.7264175405670703 0.1939654174778398 VPS(ph)PGMEEAGCSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VPSPGMEEAGCSR 13 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR 230.69 3.8424e-12 8283620000.0 441024.0 512389.0 472103.0 413289.0 483292.0 414939.0 390303.0 426567.0 538050.0 477167.0 True False 438649.575786373 529443.5581193087 538570.9988071625 465611.3450245239 544836.3715038901 386255.2435913417 371422.5527877481 458399.59560333623 405454.78700062045 446713.793536778 0.9819476858178969 1.1851963511749486 1.2056287640977486 1.0423034877390462 1.2196542380978297 0.8646593169493013 0.8314553035111705 1.0261594833999594 0.9076388346786952 1.0 18.76899127700695 2.733964365001791 24.99508931829766 0.9279066907297857 1.1298511222459102 0.5737155688461892 0.08658805952883585 284.04966989901186 1544698.0934364363 0.0272526271386672 0.026502586805013332 541.9564196353698 -2.733964365001791 0.2019444315161245 VPS(ph)PGPPTLTSYSVLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSPGPPTLTSYSVLR 16 0 F8W1U0;F8W130;Q12815 F8W1U0 TROAP Tastin 1 VPS(1)PGPPTLTSYSVLR 83.10600000000002 0.008531299999999999 90444000.0 30511.0 28343.0 31286.0 34107.0 39220.0 29185.0 28798.0 33601.0 46532.0 35938.0 True False 30346.732166090766 29286.37962129471 35690.79685721308 38424.942702930486 44214.4345248474 27167.509644100224 27404.930720956705 36108.47724242079 35064.81209685506 33644.40607193026 0.9019844814977798 0.8704680224903278 1.0608241019594082 1.142090088342759 1.3141689715169556 0.8074896488295048 0.8145464260051484 1.073238658611552 1.0422181928813972 1.0 15.038079032879546 4.241927280201463 24.987874485151448 1.031079779611072 0.8862262013015196 0.1490640742876429 0.1391369071042807 170.7062814121915 1266949.9778491145 0.036743236865931894 0.09254732118446518 17455.29850779542 -4.241927280201463 -0.14485357830955237 VPS(ph)PYVR ddPTM_BT-474_Trastuzumab_2h_R1 6 VPSPYVR 7 0 A0A2R8Y8C6;Q8WXX7-2;Q8WXX7;A0A087WVB5;Q75MD7;A0A2R8Y568;A0A024RDL5;A0A2R8Y522;Q8WXX7-5 A0A2R8Y8C6 AUTS2 Autism susceptibility gene 2 protein 1 VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR 119.21 0.0050694 4809340000.0 3796570.0 4335470.0 3855380.0 3812280.0 3565920.0 4251620.0 4118110.0 3695480.0 4565530.0 4060010.0 True False 3776129.688958581 4479773.498103039 4398183.992436299 4294914.257118121 4020018.7751362515 3957715.5166369546 3918901.2865920938 3971255.48286721 3440416.306467692 3800896.685850562 0.9934839068411988 1.1786096461868336 1.1571437889404448 1.1299739540689482 1.0576501040139834 1.041258377627094 1.0310465162551832 1.0448206860372806 0.9051591218659494 1.0 21.857908380412834 2.329850514050774 0.8189959911641466 0.9765339699856593 1.1205530099447143 0.4707873672445019 0.05702955419594859 0.5592321287929158 0.7297195829034765 0.04378157261970108 0.02805372274221203 213.72263207808325 -2.329850514050774 0.14401903995905496 VPS(ph)S(ph)DEEVVEEPQSR ddPTM_BT-474_Trastuzumab_2h_R1 5 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR 228.76 8.0988e-13 13013650000.0 2773220.0 2943490.0 2544700.0 2729690.0 2650310.0 3203690.0 2982110.0 2754770.0 3287530.0 2990040.0 True False 2758289.2916537067 3041462.2852727226 2902971.641071088 3075268.4741185773 2987811.268881907 2982226.4509750702 2837853.9465335174 2960344.9258386185 2477362.282145057 2799213.0872979653 0.9853802499602623 1.086541892460426 1.037067043678793 1.0986189254663294 1.0673754286301915 1.0653802900920861 1.0138041864018474 1.0575632627868967 0.8850209701385807 1.0 21.416589884133085 1.2567077036740206 24.98214689496357 0.9425104982275968 1.053038413455911 0.5339652008225313 0.04069464996454915 139.64827284102986 192247.72654947746 0.025097771528465453 0.009125674927293421 18.059582398783977 -1.2567077036740206 0.11052791522831418 VPS(ph)VESLFR ddPTM_BT-474_Trastuzumab_2h_R1 10 VPSVESLFR 9 0 Q13439-5;Q13439-3;Q13439-4;Q13439;E7EVX2;Q86W71 Q13439-5 GOLGA4 Golgin subfamily A member 4 1 VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR 188.49 4.124300000000001e-05 4656742000.0 856120.0 937868.0 877787.0 908031.0 776230.0 893458.0 890797.0 820977.0 1183723.0 916518.0 True False 851510.7450438745 969084.3694268224 1001371.7797386214 1022987.6314974844 875078.2894243317 831695.3514339052 847705.7459349984 882242.472576736 892010.3277255559 858025.0365694625 0.992407807175845 1.1294360049228809 1.1670659212256613 1.19225848652106 1.0198750061222586 0.9693136167205235 0.9879732056820597 1.0282246262930732 1.0396087406632941 1.0 19.71066021960641 3.126883529158169 7.536840556755563 1.0060094413998635 1.123951049919895 0.5292726920808639 0.05218283047784101 0.18229335466040977 11.410359356130712 0.015685291951360873 0.018800561456706714 1339.317455713073 -3.126883529158169 0.11794160852003155 VPS(ph)WGLEDNVVCSQPAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPSWGLEDNVVCSQPAR 17 0 B8ZZD4;Q86VP1-2;Q86VP1;Q86VP1-4;Q86VP1-3;H7C3L5 B8ZZD4 TAX1BP1 Tax1-binding protein 1 1 VPS(1)WGLEDNVVCSQPAR;VPS(1)WGLEDNVVCSQPAR 131.48 2.8112e-05 375100000.0 26605.0 29628.5 37193.0 30505.0 24631.1 36075.0 29743.5 32193.0 36036.0 22912.7 True False 26461.761636093393 30614.66671169352 42429.45111264867 34366.9298722519 27767.724585032352 33581.22016141567 28304.693273795947 34595.40513274164 27155.410657660737 21450.3918694506 1.2336260240438743 1.4272311153109782 1.9780268524173772 1.6021586030415085 1.294508965338709 1.565529448869494 1.3195420133143192 1.6128099357481676 1.2659633829969867 1.0 14.388716383588907 0.9949580820869833 4.1715871076631865 1.0008005792589847 1.5104382502359444 0.38400430796607077 0.20204416045419823 0.18207595992694428 9.191647528534748 0.1956543685751308 0.04995576139589492 9.88457684550128 -0.9949580820869833 0.5096376709769597 VPSGETPPS(ph)PSQEGEEGSGLSRPGEAGLGGQER ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSGETPPSPSQEGEEGSGLSRPGEAGLGGQER 33 1 Q9P2Y4 Q9P2Y4 ZNF219 Zinc finger protein 219 1 VPSGETPPS(0.982)PS(0.018)QEGEEGSGLSRPGEAGLGGQER 267.48 3.1695999999999997e-60 472200000.0 23977.0 29998.0 24346.0 32269.0 24711.0 34353.0 33193.0 28861.0 34742.0 36026.0 True False 23847.910496095123 30996.465295826056 27773.705180774454 36354.25209138491 27857.79937642795 31978.25796826369 31587.327780426294 31014.75437318849 26180.299618949084 33726.78983658966 0.7070910279822392 0.9190458222086254 0.8234909196914791 1.0779043089343996 0.8259843142914676 0.9481559947804752 0.9365649068135652 0.9195880937218956 0.7762464125935428 1.0 15.041607386691977 5.332537427053939 1.582084110287548 0.916975337696567 1.1322574327224966e-11 0.34513880110015005 0.08467185086413156 6.720966726457743 4.159623438238353 0.020577099165929418 15.210308835188869 215048.99983818195 -5.332537427053939 -0.9169753376852444 VPSIDVLCNEFHTPHDAAFFLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPSIDVLCNEFHTPHDAAFFLSR 23 0 Q8NI27;A0A0C4DG98 Q8NI27 THOC2 THO complex subunit 2 0 ; 202.17 1.23e-24 412470000.0 283897.0 344623.0 328259.0 292790.0 339620.0 322105.0 333318.0 246417.0 380740.0 298899.0 False True 282368.53009592195 356093.56822599756 374475.0139216237 329857.1839795649 382868.5939145508 299838.63950361207 317194.1349415877 264805.88782017224 286911.72865461616 279823.00991969125 1.0090968937006333 1.2725671428100063 1.3382566859998304 1.178806503704729 1.368252718117904 1.0715296057663923 1.133552723318293 0.9463334980785573 1.0253328657173668 1.0 18.094155075009965 2.2477521265354636 1.7260431161411771 0.9935532739932829 1.2351295935835436 0.47690192816300614 0.10286738689096508 0.29023770558819956 1.7276321348353492 0.05193821703089059 0.0326830727442002 176.90989573382367 -2.2477521265354636 0.2415763195902607 VPSS(ph)DEEVVEEPQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 VPS(0.016)S(0.984)DEEVVEEPQSR;VPS(0.039)S(0.961)DEEVVEEPQSR 306.69 4.2875e-45 1757830000.0 537790.0 590780.0 532200.0 552230.0 600930.0 565780.0 567510.0 493770.0 570550.0 589340.0 True False 534894.5983940866 610443.7551659482 607129.134034674 622142.2613785828 677454.8735088357 526668.9603028618 540057.3732012685 530617.6247132563 429945.5974783085 551727.8166406412 0.9694899953584928 1.1064219289917563 1.1004142182487013 1.1276253301250623 1.2278787711551704 0.9545811257254389 0.978847462304091 0.9617380322494512 0.7792711995131223 1.0 19.073597193566226 2.5990297927618533 7.625608704928556 0.9366223901187295 1.107002092291659 0.5308157073390096 0.08075602016087541 0.22364703121147653 13.029029715943501 0.026300377785808834 0.02475402648576272 397.21879789104094 -2.5990297927618533 0.17037970217292953 VPSS(ph)QSMEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPSSQSMEDR 10 0 O95049;O95049-4;O95049-3;O95049-5 O95049 TJP3 Tight junction protein ZO-3 1 VPS(0.128)S(0.436)QS(0.436)MEDR 130.69 0.00028329 259970000.0 85870.0 91563.0 79577.0 81784.0 74799.0 89939.0 83196.0 79346.0 74188.0 75053.0 True False 85407.68546105397 94610.6191039977 90780.74990431644 92137.84601449764 84324.20928159256 83721.72862363305 79171.49164041656 85267.20143082405 55905.36146826874 70263.0532838939 1.215541902455748 1.3465201792715844 1.2920125964000162 1.31132710163078 1.200121619265325 1.1915469754119585 1.1267869518924636 1.213542501295905 0.7956580144957022 1.0 16.100478649844746 1.2900619031341776 7.4078945426446925 0.898987099320525 1.2368049390330966 0.7603149685795112 0.07620046240464341 0.09373543123920276 11.142086058790587 0.05515324198960721 0.019736502547862363 19.50122545022264 -1.2900619031341776 0.3378178397125716 VPTANVSVVDLTCR ddPTM_BT-474_Trastuzumab_2h_R1 4 VPTANVSVVDLTCR 14 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;; 227.06 5.0514e-12 1869180000.0 515670.0 540130.0 453238.0 472290.0 398357.0 537458.0 536020.0 480783.0 642410.0 532530.0 False True 512893.6900163227 558107.9005345205 517049.97078468103 532081.8655750147 449085.4027030761 500304.79350004485 510090.6648047512 516661.4688266066 484096.6633529756 498543.4794781295 1.028784270838754 1.1194768831772557 1.0371211179532906 1.06727274044782 0.9007948577989112 1.003532919583582 1.0231618420497832 1.0363418439800733 0.9710219535109021 1.0 18.927359806326212 3.3747889781471154 20.680116882206754 0.9959008201511292 1.065396108964578 0.42786051412199344 0.04145866266114694 3.587421930989248 713.3450384996862 0.011691017943553638 0.015829707433881228 2370.2217450915186 -3.3747889781471154 0.0694952888134488 VPVAS(ph)PSAHNISSSGGAPDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPVASPSAHNISSSGGAPDR 20 0 E9PC69;Q7KZI7-14;E7ETY4;Q7KZI7-12;Q7KZI7-3;Q7KZI7-6;Q7KZI7-11;Q7KZI7-8;Q7KZI7;Q7KZI7-13;Q7KZI7-15;Q7KZI7-16 E9PC69;Q7KZI7-12;Q7KZI7-13 MARK2 Serine/threonine-protein kinase MARK2 1 VPVAS(0.963)PS(0.037)AHNISSSGGAPDR 56.298 0.019587 0.0 22893.0 26734.0 22570.0 31684.0 31988.0 26275.0 35117.0 27641.0 32758.0 31132.0 True False 22769.746631651415 27623.82502895574 25747.659818043187 35695.191151366285 36061.48219226974 24458.67109469706 33418.25655003252 29703.711778154015 24685.229834711114 29145.129106553853 0.7812539292039434 0.9478024587904118 0.883429259273836 1.2247395103609104 1.237307340805727 0.8392027019429826 1.1466154920040403 1.0191655583187844 0.8469761703392199 1.0 14.830967172031826 3.9424145290995067 24.893469436047987 1.0498049641163123 0.8772998224784956 0.26219719646796436 0.13350621350592787 340.3234880992216 147117.49943021647 0.03440501019580148 0.062024694181487275 8758.193359036737 -3.9424145290995067 -0.17250514163781672 VPVDVAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VPVDVAYR 8 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 Q15149-3;Q15149-4;Q15149-5;Q15149-8;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 ; 97.093 0.019719 708270000.0 460140.0 536820.0 525640.0 529200.0 464080.0 552440.0 607130.0 481480.0 618880.0 556000.0 False True 457662.6573663601 554687.7291854577 599645.5430552168 596196.6657399014 523177.83718233486 514251.1231038802 577760.802438171 517410.4825059004 466365.31656712905 520515.60398445104 0.8792486793153496 1.0656505298581356 1.1520222227057952 1.145396336202269 1.0051146078571034 0.9879648547851065 1.1099778719706355 0.994034527582302 0.8959679844315684 1.0 18.989581887632117 1.508863335819335 5.619530069703739 0.9465030172932017 1.0535243685957651 0.2076253948367326 0.07997819074875168 0.21180870097891116 14.877899194889542 0.04740673641546619 0.02087746416126359 32.2747833609271 -1.508863335819335 0.1070213513025634 VPVFRPMDLMVEASPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VPVFRPMDLMVEASPR 16 1 P63151;P63151-2;A0A590UJY3 P63151 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 96.773 0.0030088000000000003 227560000.0 181650.0 330630.0 324860.0 359720.0 384600.0 336490.0 312130.0 232900.0 226730.0 322640.0 False True 180672.0165832122 341634.81967994414 370597.4642662608 405260.5151170778 433576.5302972034 313229.23831225914 297031.0794476082 250280.18064223696 170855.42952634633 302048.83897399914 0.598154977840404 1.1310582117792964 1.2269455016781654 1.3417052569831704 1.4354517361165104 1.0370152038201426 0.9833875887640049 0.8286083187486825 0.5656549785349575 1.0 18.204422315539762 1.9880188240598806 1.975074117466543 0.7734130720622739 1.1596037502177163 0.2888913674434722 0.2315589600087081 0.403886733792765 2.9308966547120114 0.1403401665217787 0.07179731779729417 97.27893874460766 -1.9880188240598806 0.3861906781554424 VPVHDVTDASK ddPTM_BT-474_Trastuzumab_2h_R1 4 VPVHDVTDASK 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ;;; 196.48 6.032600000000001e-08 3400030000.0 5937500.0 5385600.0 4511500.0 4316750.0 4347830.0 5953000.0 5963200.0 5350300.0 7639200.0 6141200.0 False True 5905533.159718261 5564856.440336055 5146679.985339024 4863250.107393655 4901500.378892581 5541483.121854679 5674737.234363815 5749566.5542729 5756621.520035567 5749263.358254163 1.0271808389573498 0.9679251225022844 0.8951894642206614 0.845890995828454 0.8525440692946417 0.9638596767182049 0.9870372742999586 1.0000527364985468 1.001279844272717 1.0 22.454945687559498 2.4983808262479674 6.057302569689612 0.994872483231922 0.9144304080781567 0.36231245910162657 0.049645177440773784 0.20853490661484428 27.653781252609722 0.018573529135129007 0.016735709739079337 315.0509737431279 -2.4983808262479674 -0.08044207515376534 VPVLIS(ph)PTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VPVLISPTLK 10 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 VPVLIS(0.994)PT(0.006)LK 108.98 0.0021806 88124000.0 268430.0 233500.0 242040.0 193880.0 182890.0 239250.0 217980.0 237900.0 277080.0 276690.0 True False 266984.8027053766 241271.90634626948 276117.1281506056 218425.18812103555 206179.95742604145 222711.21063392088 207435.4746355355 255653.3060317226 208797.34668178047 259031.40731377338 1.0307043669880889 0.9314388121823728 1.0659600355571388 0.8432382404364187 0.7959650899641246 0.8597845834352564 0.8008120589958498 0.9869587193418643 0.8060696146736264 1.0 17.982767508366976 3.728187900511368 24.95570421771874 0.8693403616710068 1.0015748467774646 0.42028052615876166 0.07461564872877226 651.4961557006555 1567433.8825980008 0.019415588606888457 0.03041663908754525 5347.956924046522 -3.728187900511368 0.13223448510645774 VPVPDERFDFLCQYHKPASK ddPTM_BT-474_Trastuzumab_2h_R1 1 VPVPDERFDFLCQYHKPASK 20 2 J3KQ32;Q9NTK5;Q9NTK5-3;C9JTK6 J3KQ32 OLA1 Obg-like ATPase 1 0 97.457 0.00056393 510570000.0 194940.0 260710.0 252930.0 282630.0 251810.0 272580.0 296070.0 253570.0 473170.0 343780.0 False True 193890.46469987012 269387.57474747667 288540.3454930287 318410.92902129324 283876.51090519706 253737.1861843015 281747.96300276625 272492.68100237026 356563.59365316125 321839.66607513453 0.6024442762583707 0.837024155638377 0.8965344421705558 0.9893464435392472 0.8820432682120828 0.7883962510856748 0.8754295778351673 0.8466721468035452 1.1078920072267298 1.0 18.295982620644992 4.750908889544459 2.248686846298035 0.9082498157306562 0.5185337787396642 0.5512901437144099 0.08654127964200051 0.5044430381776084 2.8825424243169357 0.021642054995515345 0.3950979607780464 56351.94229231508 -4.750908889544459 -0.389716036990992 VPVPGPGS(ph)GGNGPER ddPTM_BT-474_Trastuzumab_2h_R1 6 VPVPGPGSGGNGPER 15 0 A0A494C1T9;Q6ZRV2;J3KPS2 A0A494C1T9 FAM83H Protein FAM83H 1 VPVPGPGS(1)GGNGPER;VPVPGPGS(1)GGNGPER;VPVPGPGS(1)GGNGPER;VPVPGPGS(1)GGNGPER;VPVPGPGS(1)GGNGPER;VPVPGPGS(1)GGNGPER 181.97 5.936600000000001e-07 10233160000.0 1212471.0 1271750.0 1204049.0 1242535.0 1249565.0 1333702.0 1287365.0 1200784.0 1367057.0 1251210.0 True False 1205943.1908541932 1314079.429960889 1373568.6334184806 1399839.803600018 1408689.6959979835 1241506.3199368094 1225090.2367381235 1290392.5995376026 1030164.1199752938 1171356.7065852245 1.0295268589615167 1.1218439460612595 1.1726305280846094 1.195058512688995 1.202613762382118 1.0598874902557114 1.045872900928313 1.1016222405038303 0.8794623483895527 1.0 20.159749047773577 1.332073775112367 5.403437236560588 0.9413611840128214 1.1195527878210974 0.5524465907144038 0.06339449358769933 0.15169451064650524 6.46816224751032 0.04826663691269399 0.01690862583437239 21.481953645463975 -1.332073775112367 0.17819160380827592 VQAAEHTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VQAAEHTLR 9 0 Q9GZZ9-2;Q9GZZ9;E7EWE1;E7EQ61;C9JRV9;C9J5W5 Q9GZZ9-2 UBA5 Ubiquitin-like modifier-activating enzyme 5 0 ;;; 175.65 5.3757e-05 734080000.0 670370.0 849420.0 877690.0 804150.0 601870.0 748800.0 781820.0 616990.0 1039970.0 792470.0 False True 666760.8024051088 877692.4312147677 1001261.1229817608 905955.3075486432 678514.5769370185 697037.2184856012 744000.3797575652 663032.9268117371 783683.3283840445 741893.8861322987 0.8987279917902009 1.183043084221148 1.349601528867715 1.2211386621227502 0.9145709239825465 0.9395376232569487 1.0028393462523977 0.893703182092946 1.0563280585443369 1.0 19.500853325840183 3.238752015047373 24.999997547587167 0.9590450782990518 1.177869907497282 0.41151770443768076 0.11357738500616402 4.696616962822785 613385.1909177385 0.03290605803286104 0.041892453869751774 1732.814267077553 -3.238752015047373 0.2188248291982302 VQAERPDTMLGVVCGALHVADVSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQAERPDTMLGVVCGALHVADVSLR 25 1 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ; 248.64 2.271e-39 1059690000.0 469980.0 624620.0 582080.0 552460.0 588960.0 611960.0 594790.0 546240.0 728270.0 640650.0 False True 467449.6798996868 645410.0991092372 664031.8044699411 622401.3793550006 663960.5649605842 569656.6455988891 566017.7353815483 587003.2025505175 548797.6168180315 599763.1685119398 0.7793904401623505 1.0761082590492361 1.1071566900606065 1.037745250178046 1.1070379106605082 0.9498026479556132 0.943735402735522 0.9787249924114534 0.9150238721388012 1.0 19.194033403384545 2.6742642748961987 24.989505556510768 0.9569041642056533 1.0301851632781753 0.10837009494196037 0.09011451502863935 425.3773285892115 165326.7883119255 0.028785968933818275 0.027139677281602943 472.35038632925927 -2.6742642748961987 0.07328099907252206 VQAGPGS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 VQAGPGSPR 9 0 Q6PK04;I3L0U5;I3L4F6 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 1 VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR 91.784 0.011034 1047700000.0 970520.0 1045420.0 1000870.0 1054410.0 989740.0 1054970.0 1005730.0 932770.0 1184560.0 1176500.0 True False 965294.8281549079 1080216.1727302654 1141783.7962820083 1187898.1978889077 1115777.5223514142 982042.4070322562 957078.9976383003 1002378.0339100872 892641.0602907805 1101414.7627476736 0.8764135553683787 0.9807533086223355 1.0366519815238604 1.0785203159302914 1.0130402824526432 0.8916190705328646 0.8689542123538437 0.9100822576678365 0.8104495150073436 1.0 20.070926420132906 2.73472279402046 23.460471558023453 0.890108439974645 1.002892444231381 0.36985047487276057 0.065360345551215 141.32514101157034 863911.3610071733 0.020887949353648197 0.020411862033020495 542.9036906853624 -2.73472279402046 0.11278400425673596 VQAMQISS(ph)EKEEDDNEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQAMQISSEKEEDDNEKR 18 2 Q9UKY7;Q9UKY7-2;H0Y8K3 Q9UKY7 CDV3 Protein CDV3 homolog 1 VQAMQIS(0.037)S(0.963)EKEEDDNEKR 165.1 1.5131999999999998e-11 525180000.0 469560.0 249130.0 212200.0 221350.0 228800.0 393540.0 359690.0 366320.0 587200.0 333910.0 True False 467031.9411330202 257422.14144773455 242075.91552453546 249372.88730447346 257936.32379615208 366335.50609351415 342290.42055076483 393656.65853526926 442492.4280768778 312599.57792526623 1.494026141150691 0.8234884485649464 0.7743961688342682 0.7977390403389845 0.8251333079464919 1.1719001942513647 1.0949804309479805 1.2593000321624923 1.4155247138006861 1.0 18.253956304836013 2.6499936536515456 5.612685585208119 1.204350575859005 0.9194274699871701 0.23214155922724866 0.22046182289356997 0.3089674483527621 15.392860988967476 0.07223852654146734 0.06805244348840545 446.67706480804185 -2.6499936536515456 -0.2849231058718349 VQAMQISSEKEEDDNEKR ddPTM_BT-474_Trastuzumab_2h_R1 5 VQAMQISSEKEEDDNEKR 18 2 Q9UKY7;Q9UKY7-2;H0Y8K3 Q9UKY7 CDV3 Protein CDV3 homolog 0 ;;;; 249.0 7.773399999999998e-25 3703270000.0 2818250.0 1734746.0 1570704.0 1454339.0 1489381.0 2482710.0 2454060.0 2273830.0 3871180.0 2370080.0 False True 2803076.8551370134 1792485.9719338978 1791845.470396091 1638458.168283262 1679044.8420971883 2311086.1013707104 2335347.7423804104 2443514.740874783 2917179.560154376 2218819.465272427 1.263319030236131 0.8078557088527326 0.8075670411409915 0.7384369003099996 0.7567289129992534 1.0415836608351345 1.0525181426122363 1.1012679396044365 1.3147439914838697 1.0 21.081360856439115 2.521980251631318 3.5302117380732714 1.117188300273898 0.8602570813095144 0.3418876398760743 0.1588343420526305 0.26708807062940243 6.795109126151946 0.055939046321741 0.04998917255985072 332.6444268431394 -2.521980251631318 -0.25693121896438365 VQAWYMDDAPGDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQAWYMDDAPGDPR 14 0 Q9BV57 Q9BV57 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 0 101.95 0.0027961 167520000.0 192230.0 186230.0 156850.0 172310.0 171050.0 198610.0 183220.0 174370.0 168490.0 218170.0 False True 191195.05503876056 192428.55297158778 178933.11663536 194124.42833265767 192832.2036072195 184880.55817765105 174356.94863163016 187382.37483291907 126967.89715032901 204246.20381526597 0.9361008991466507 0.9421401689582105 0.8760658131849499 0.9504432626235584 0.9441164633915544 0.9051847952330585 0.8536606574550112 0.9174338192468944 0.6216414052188081 1.0 17.639949738669284 1.8905992469082344 1.584465007179382 0.8273870346435056 0.9260657348953255 0.14227155256956026 0.09159914172974144 0.6777974536357625 3.185860389639592 0.05994277189186979 0.026603641182733315 77.73189348812744 -1.8905992469082344 0.0986787002518199 VQAYEEPSVASS(ph)PNGK ddPTM_BT-474_Trastuzumab_2h_R1 4 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 VQAYEEPSVASS(1)PNGK;VQAYEEPSVAS(0.002)S(0.998)PNGK;VQAYEEPSVAS(0.002)S(0.998)PNGK;VQAYEEPSVASS(1)PNGK 346.79 4.4736000000000005e-87 5013200000.0 5069200.0 4587700.0 4441910.0 4070430.0 4120980.0 5340700.0 5352400.0 5175400.0 6923400.0 5500500.0 True False 5041907.990441061 4740398.821176781 5067292.318226149 4585746.020649409 4645762.376037882 4971509.979655517 5093483.9638463985 5561614.628148703 5217220.838806971 5149453.380785022 0.9791151832259978 0.9205634988104541 0.9840447021298506 0.8905306411280343 0.9021855394153789 0.9654442155368387 0.9891309984186921 1.0800398055649254 1.0131601265242678 1.0 22.29598786634143 2.1483802344732505 2.647930038218524 1.0387572490074877 0.9356876561677203 0.5714211842712056 0.03515597201423418 0.17371604991511522 2.442516073269464 0.01567953053517164 0.010301763445658843 140.72790890462153 -2.1483802344732505 -0.10306959283976735 VQCCLYFIAPSGHGLKPLDIEFMK ddPTM_BT-474_Trastuzumab_2h_R1 2 VQCCLYFIAPSGHGLKPLDIEFMK 24 1 E7EPK1;E7ES33;Q16181;Q16181-2;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1 E7EPK1 SEPT7 Septin-7 0 ; 127.28 5.1528e-05 832840000.0 444550.0 491930.0 432490.0 500550.0 474250.0 534850.0 536750.0 499290.0 752220.0 546200.0 False True 442156.59219414846 508303.59267203475 493380.83272953104 563919.578677453 534642.9264000226 497877.07840147393 510785.35191588075 536549.5551432475 566845.460231589 511341.0483746535 0.8646999758763462 0.9940598242361461 0.9648762490275117 1.1028247790196493 1.0455701299542377 0.9736692956374692 0.9989132566991461 1.0492988130890755 1.1085467556992767 1.0 18.963926318786534 5.183447769293982 1.0993848379579738 1.0355325084638245 0.5976468288258815 0.5595374626588263 0.045052680657901405 3.023209041690557 1.5452141434714974 0.013325895341131575 1.9403877750773932 152562.49035107016 -5.183447769293982 -0.437885679637943 VQDDEVGDGTTSVTVLAAELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQDDEVGDGTTSVTVLAAELLR 22 0 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 ; 256.67 9.4316e-37 123640000.0 120576.0 132709.0 123600.0 123205.0 131166.0 145438.0 141441.0 130397.0 156504.0 147906.0 False True 119926.8322132529 137126.13884071526 141001.80564954085 138802.74036750678 147869.21261820846 135384.21338422655 134598.95847290935 140127.88628254927 117935.68624615746 138466.51245130273 0.8661071192605502 0.9903198716652962 1.018309793128716 1.0024282254983659 1.0679059506912372 0.9777397508429325 0.972068669096049 1.0119983799825307 0.8517271371851317 1.0 17.07917758311537 -0.14847628653323275 9.950942639495398 0.9999703441599949 0.9811283430992546 0.0019391965615862539 0.06361765236618384 0.0 0.0 0.05907302749015123 0.013923646107835095 0.7104339602544532 0.14847628653323275 -0.0188420010607403 VQDLFCSVGLNVNNPHFLIMQGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQDLFCSVGLNVNNPHFLIMQGR 23 0 O95347-2;O95347 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 207.24 1.2294e-24 120340000.0 30103.0 34271.0 33261.0 31406.0 35431.0 32147.0 41531.0 37770.0 46850.0 48642.0 False True 29940.928792757702 35411.68951774303 37943.859690205376 35381.996379870274 39942.927834009904 29924.753555898245 39521.986866173116 40588.58919217381 35304.44525783675 45537.62591548862 0.6574986769912824 0.7776358298401876 0.8332419384494001 0.7769837726177083 0.8771411998539036 0.6571434710152512 0.8678973941136132 0.8913198344485608 0.7752807606473995 1.0 15.474771458700046 -4.999999999935883 0.08359907665605905 1.6584801685413684 0.6101612874118754 0.46438469782885305 0.07357182565635485 212.27480054755878 1.2490481388925794 25.47878674034202 2.150799019952908 1.0000000001476342e-05 4.999999999935883 -1.048318881129493 VQDLLEFLHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VQDLLEFLHEK 11 0 O75962-5;O75962;E7EPJ7;O75962-4;O75962-2;E7EWP2;F5H228 O75962-5 TRIO Triple functional domain protein 0 121.28 0.0004149 54782000.0 96192.0 98890.0 96517.0 87880.0 85419.0 108610.0 111120.0 99798.0 138190.0 114300.0 False True 95674.11295993598 102181.49386973269 110105.75465919687 99005.59898946053 96296.6033319209 101102.04634043941 105744.7010803775 107245.43352397562 104134.92615113045 107005.27614284673 0.8941065002459859 0.9549201455573598 1.0289750059820522 0.9252403484973298 0.8999238804203421 0.9448323483177894 0.9882195055430124 1.0022443508375072 0.973175621846118 1.0 16.707322408235726 2.2270369036127513 5.613755641176834 0.9925994701930614 0.9431628459806493 0.317898356836923 0.03553623325923975 0.2259692661297827 22.574704980297625 0.014016173431138049 0.010760999114210395 168.66963441431338 -2.2270369036127513 -0.04943662421241213 VQDTS(ph)NTGLGEDIIHQLSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 VQDT(0.01)S(0.988)NT(0.002)GLGEDIIHQLSK;VQDT(0.19)S(0.757)NT(0.053)GLGEDIIHQLSK 258.09 3.3051999999999997e-31 678540000.0 491180.0 421810.0 380990.0 366800.0 360860.0 536610.0 495320.0 496550.0 646370.0 552320.0 True False 488535.54145522864 435849.6908604709 434630.0803755554 413236.84239114873 406813.38201520726 499515.4137440683 471359.4792938496 533605.0824298091 487080.77441425744 517070.4647350584 0.9448142463630159 0.842921266221995 0.8405625732234684 0.7991886417316197 0.7867658467471241 0.9660490161626517 0.9115962164564347 1.031977494021483 0.9420007670788789 1.0 18.98000137431284 2.7191404996396393 21.85345849064236 0.9723450052077106 0.8403017000582618 0.6238940570910918 0.04945486374370074 105.76210381040548 119013.30749208994 0.01636210130172774 0.015462433546205676 523.7698552099956 -2.7191404996396393 -0.13204330514944884 VQEAPIDEHWIIECNDGVFQR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQEAPIDEHWIIECNDGVFQR 21 0 A0A1W2PR36;Q14353;Q14353-2 A0A1W2PR36 GAMT Guanidinoacetate N-methyltransferase 0 ;; 229.35 1.3309000000000005e-25 2080644000.0 743625.0 796004.0 749679.0 792710.0 701161.0 790803.0 851204.0 671984.0 837638.0 824304.0 False True 739621.4056245039 822498.5119454217 855227.286873318 893067.0047216127 790449.6972431539 736136.6499600267 810028.0106049456 722130.8583456114 631213.3386741481 771696.2129978399 0.9584359663387051 1.0658319920350885 1.1082434674014812 1.157277941344663 1.0243016408911243 0.9539202571700158 1.0496721338805028 0.9357708981625296 0.8179557292655976 1.0 19.557673500355598 2.128191580876541 1.0913232682080036 0.9127092030281422 1.067971176250413 0.3896996588841751 0.07179178267189772 0.512524226185535 1.1438832024845365 0.05375628424672165 0.02762395551309349 134.33574274191474 -2.128191580876541 0.15526197322227075 VQEAVLDKWVNDPHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQEAVLDKWVNDPHR 15 1 Q9H4A6 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 0 ; 132.64 2.7745e-05 467390000.0 574190.0 725190.0 625600.0 677680.0 657170.0 740670.0 821450.0 636170.0 937650.0 789450.0 False True 571098.624838506 749327.5107633874 713679.0421873212 763474.2185159035 740856.7041482392 689469.2262496399 781713.3252562647 683644.2358058036 706578.7213662886 739066.6251178513 0.7727295556708961 1.0138835732758193 0.9656491281466244 1.033024889189334 1.0024220807293287 0.9328918433296827 1.0577034582391174 0.9250102934857732 0.9560419823498563 1.0 19.495344900235178 4.7433547458214305 24.720914008508142 0.9850867843329468 0.7727294537043573 0.7154309011627997 0.04059351870335652 221.27218422042768 1140944.2493671677 0.009337484256208197 0.07601021357553035 55380.22881878325 -4.7433547458214305 -0.21235733062858952 VQEFEHVNGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VQEFEHVNGR 10 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y4X2;A0A2R8Y445;A0A2R8YER1;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ;;; 147.91 2.6054e-05 2611540000.0 2233980.0 2691960.0 2500360.0 2618940.0 2416970.0 2755890.0 2659720.0 2500380.0 2858240.0 2470720.0 False True 2221952.4998985133 2781560.2612758195 2852388.954481277 2950497.535474031 2724756.8029964436 2565381.8109672563 2531059.182482914 2686971.052272374 2153865.0504537746 2313036.534310187 0.9606214458524159 1.2025578584755727 1.2331793779175824 1.2755948692154804 1.1779998986522895 1.1090969696820312 1.0942581947750114 1.1616639047483548 0.9311850541505251 1.0 21.141356622782872 1.2440375807525457 24.9174890922466 0.9655924926743045 1.1571009462647175 0.4428360420340298 0.08341355076982555 104.05475739769703 473415.4303431176 0.060636387048677305 0.02073684872243638 17.5403227674047 -1.2440375807525457 0.19150845359041302 VQEHEDS(ph)GDS(ph)EVENEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK 219.23 2.3217e-15 1737700000.0 872010.0 709310.0 618910.0 590340.0 637790.0 958040.0 826200.0 840670.0 1232550.0 883060.0 True False 867315.1950494179 732918.9545630504 706047.1483378425 665076.9834710764 719008.7760224984 891812.9497835799 786233.5496095018 903405.0642357621 928804.567823834 826702.354774298 1.0491263149797219 0.8865572359028155 0.8540524219634089 0.8044938781535855 0.8697311334244335 1.0787594164130063 0.9510479135191955 1.0927815301583423 1.123505409728041 1.0 19.65700847059971 2.741373695858506 24.99062223469104 1.0498226974516234 0.8853881330374691 0.5257449881559755 0.07411694022952817 197.6216234920132 1755622.370811961 0.02373446735709208 0.024168050423040627 551.2818519515528 -2.741373695858506 -0.16443456441415427 VQEKPDS(ph)PGGSTQIQR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQEKPDSPGGSTQIQR 16 1 M0R300;Q13459-2;Q13459;M0R0P8 M0R300 MYO9B Unconventional myosin-IXb 1 VQEKPDS(0.999)PGGS(0.001)TQIQR;VQEKPDS(0.834)PGGS(0.134)T(0.032)QIQR;VQEKPDS(0.998)PGGS(0.001)T(0.001)QIQR 152.51 3.2714e-07 3331820000.0 3835080.0 3211910.0 2692870.0 2847770.0 2951290.0 4220870.0 3823530.0 3555190.0 5028070.0 3900440.0 True False 3814432.3553974447 3318816.482709408 3072002.6891543656 3208297.3900115616 3327119.287833681 3929091.1917592343 3638571.2465969766 3820496.3306890214 3788969.521186154 3651510.579865316 1.0446176375417042 0.908888639405728 0.8412963955502697 0.8786219620182226 0.9111624395064466 1.0760180220822904 0.9964564437140926 1.046278313352152 1.03764440450448 1.0 21.800061979958983 2.752385959588457 24.211176001543485 1.032198442405563 0.9101426642841516 0.534416022189162 0.05318061996887689 395.1352639782135 691966.6588805902 0.016583890215043928 0.017500767993832822 565.4392601692667 -2.752385959588457 -0.12205577812141144 VQELVSALER ddPTM_BT-474_Trastuzumab_2h_R1 1 VQELVSALER 10 0 D6REY2;P23508;P23508-2 D6REY2 MCC Colorectal mutant cancer protein 0 70.1 0.054994000000000015 295480000.0 69518.0 199460.0 195650.0 262070.0 235090.0 136490.0 147160.0 116560.0 53140.0 131760.0 False True 69143.72281217591 206098.90552388405 223195.8193797144 295248.0351293578 265027.31801240135 127054.76756290034 140041.3085942076 125258.29907968704 40044.35903951854 123350.96399458864 0.5605446489677147 1.670833359137149 1.809437171399049 2.393560824885894 2.148563006155574 1.0300265474088568 1.1353077759518049 1.0154626686596635 0.3246375848451032 1.0 16.91240946486024 2.618679837018646 5.899730363808966 0.9181607677965242 1.7546591598065435 0.40740731050752066 0.4917870353271662 0.2520118617233447 11.222210840712881 0.16882075176141317 0.15865257812127745 415.6041131379722 -2.618679837018646 0.8364983920100193 VQENSPGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQENSPGHR 9 0 Q9H8Y8;F8WEG2 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 0 ; 145.46 9.7116e-05 545720000.0 490960.0 510890.0 445290.0 485910.0 449000.0 452920.0 561070.0 478650.0 605940.0 579000.0 False True 488316.72591078345 527894.664810473 507982.96146993584 547426.1561785246 506177.4885684974 421610.7064589993 533928.9006044586 514369.29353545094 456614.20618001267 542047.7242931604 0.900874044896244 0.9738896432022786 0.93715541769381 1.0099224323695442 0.9338245801669247 0.7778110442374553 0.9850219393517632 0.9489372807647102 0.8423874609481029 1.0 19.048060352897846 VQEQVHTLLSQDQAQAAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQEQVHTLLSQDQAQAAR 18 0 Q07065 Q07065 CKAP4 Cytoskeleton-associated protein 4 0 177.64 9.2806e-14 424500000.0 75957.0 97466.0 114670.0 94665.0 129090.0 135540.0 116250.0 81162.0 114140.0 90932.0 False True 75548.05595161613 100710.09689055881 130814.53927049227 106649.57929377897 145528.84632362437 126170.43882684065 110626.54338187443 87218.72057228516 86011.72639764119 85128.64190919805 0.887457549624708 1.1830342248144945 1.5366689322968974 1.2528048950614776 1.7095168331106683 1.4821150202468822 1.2995220045901068 1.024552002900698 1.0103735296210303 1.0 16.377356994282945 1.7632875104043044 3.7155280200796144 1.007131590007738 1.358345862942494 0.33632365991826685 0.20850336537666816 0.25061147984578236 6.999649616652166 0.11788941864773796 0.05931576392025708 57.98124151734896 -1.7632875104043044 0.35121427293475604 VQESADELQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VQESADELQK 10 0 P84085;C9J1Z8 P84085 ARF5 ADP-ribosylation factor 5 0 131.82 0.0084127 0.0 107300.0 97746.0 82697.0 86285.0 81966.0 122510.0 101270.0 89560.0 142620.0 105400.0 False True 106722.30872215063 100999.41652129526 94340.0187847903 97208.67215299961 92403.88424945534 114041.17205752 96371.18321103153 96243.42197646502 107473.21201008925 98673.28176252008 1.0815725069224147 1.0235741095991269 0.9560847384385291 0.9851569788360197 0.9364630688157967 1.1557452029616921 0.9766694842781344 0.9753746937098628 1.0891825030077364 1.0 16.590371871658462 VQESTKGPDEAK ddPTM_BT-474_Trastuzumab_2h_R1 4 VQESTKGPDEAK 12 1 O43390;O43390-3;B4DT28;O43390-2;O43390-4 O43390;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;; 163.27 5.5122e-05 858110000.0 1395105.0 1252993.0 1068058.0 1051731.0 1063984.0 1738658.0 1703348.0 1593273.0 2640700.0 1669672.0 False True 1387593.909690736 1294698.1145547368 1218431.2826734427 1184880.03676359 1199476.0556727485 1618468.6648206948 1620950.5498187444 1712171.1217363602 1989934.8685671184 1563112.1034818832 0.8877123442393066 0.8282823168413542 0.7794906583855037 0.7580262695965511 0.7673640636528093 1.0354143258282646 1.03700211021847 1.0953604146001066 1.2730595995862828 1.0 20.575989818767134 2.60327659720663 2.9999068783301523 1.1026656506681918 0.8009185614855968 0.7807346255753652 0.0756049631962734 0.12254807745555304 2.114356740939747 0.02697324490454739 0.024912537535148504 401.122106390247 -2.60327659720663 -0.30174708918259496 VQEVQVVGVKDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQEVQVVGVKDDR 13 1 E9PF16;Q96CM8-3;Q96CM8;Q96CM8-2;Q96CM8-4 E9PF16 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial 0 ; 162.7 3.6472e-05 632940000.0 616550.0 648510.0 698250.0 576750.0 794400.0 1306140.0 727790.0 599140.0 1117110.0 898580.0 False True 613230.5633051442 670095.2633174274 796557.5307021998 649766.4908644895 895562.1312223043 1215849.6161228397 692584.0172722089 643850.8691712737 841813.2090070873 841231.855086957 0.7289673585194363 0.7965642994441295 0.9468941598982372 0.7723988183939182 1.0645841878274227 1.445320465185141 0.8232974216134712 0.7653667241413721 1.0006910745433792 1.0 19.682143956348913 4.241679292949182 1.182804059136019 0.977919182112986 0.7077603187382342 0.1951804750310805 0.18280145124638159 1.5247642884675017 3.1417382145421904 0.0619522549211148 0.41441981969353325 17445.33417238854 -4.241679292949182 -0.2701588633747518 VQFHLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VQFHLK 6 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 91.26 0.048095 577610000.0 1002900.0 1194300.0 1102100.0 935730.0 787530.0 1043100.0 1045800.0 899320.0 1716100.0 1170400.0 False True 997500.4978326638 1234051.5535304057 1257266.1003750737 1054193.3220574423 887817.277443984 970992.9521932832 995210.6586560355 966431.8250544285 1293190.1495618692 1095704.0699701465 0.9103740007644963 1.1262635481166265 1.1474504246473494 0.9621150007101504 0.8102710410377261 0.8861817518116355 0.9082841671685594 0.8820190154817622 1.1802366943814522 1.0 20.063426774159733 3.5395840292093994 7.919409272426761 0.9261975855859181 1.0663643917338856 0.17383670054425526 0.11036392848473509 0.44225674802189646 51.203839628389524 0.029084618824851236 0.04496378616183574 3464.0490207099865 -3.5395840292093994 0.1401668061479675 VQGGHS(ph)PDDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQGGHSPDDHR 11 0 A2AJT9-3;A2AJT9-2;A2AJT9 A2AJT9-3 CXorf23 Uncharacterized protein CXorf23 1 VQGGHS(1)PDDHR;VQGGHS(1)PDDHR 88.507 0.0083265 338120000.0 231050.0 267650.0 241080.0 245400.0 233170.0 253420.0 253500.0 124120.0 246350.0 214250.0 True False 229806.05247206814 276558.56845215854 275021.96849507524 276467.6148385713 262862.8173931328 235901.6718865129 241237.23653595845 133382.4646685892 185640.3434208771 200576.3815713466 1.1457283787439565 1.3788192123397363 1.3711582906247999 1.3783657511052945 1.310537239398899 1.176118893153932 1.2027200543058378 0.6649958665304968 0.9255344122101602 1.0 17.61379220902111 1.8934340576659447 5.079383781794557 0.8390267535391981 1.2972792891999125 0.7525884668794156 0.11016080515563213 0.10021517800455665 3.785810613189007 0.05051270937438952 0.02982838665462562 78.24093966978518 -1.8934340576659447 0.45825253566071444 VQHQDALQISDVVMASLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQHQDALQISDVVMASLLR 19 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 ;; 228.63 9.9076e-20 987289000.0 559627.0 666787.0 631319.0 668687.0 663070.0 681080.0 641548.0 635687.0 768511.0 691994.0 False True 556614.0304124042 688980.6022137473 720203.2276768807 753342.7056379776 747508.0341761995 633998.5426898681 610513.8722886428 683125.1918931793 579121.761569805 647830.3504741297 0.8591972111294776 1.063520104776661 1.1117157866249756 1.1628703488291745 1.1538638682629154 0.9786490278293717 0.9423977617625109 1.0544816114175852 0.8939404601003353 1.0 19.305256533574564 2.700753290680175 23.461885651705586 0.9810114576294258 1.0773115716413686 0.2277601124979497 0.08772951425602757 432.554192896656 268426.77145065664 0.029370598353333215 0.027691805652244418 502.05730520664866 -2.700753290680175 0.09630011401194283 VQIFEYNENTR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQIFEYNENTR 11 0 K7ELV2;Q96EE3;Q96EE3-1;K7ENI5 K7ELV2 SEH1L Nucleoporin SEH1 0 134.98 0.00030157 187930000.0 92117.0 123420.0 114550.0 96409.0 114490.0 125290.0 126890.0 115870.0 144080.0 119760.0 False True 91621.05230716075 127527.96009103442 130677.64431355115 108614.36951496244 129069.6228646041 116628.99720093604 120751.84593312719 124516.80777593821 108573.41457308685 112116.8142683056 0.8171927904400078 1.1374561516334967 1.1655490317520778 0.9687607538958296 1.1512066562623595 1.0402453723117067 1.077018168248673 1.1105988748303026 0.9683954657618162 1.0 16.774643131192303 4.747059383447074 24.871045468076392 1.075749343823265 0.8171926513983063 0.5369979020742888 0.06982229913982331 724.8514975332491 2121176.9841644284 0.015524815438863714 0.18045713092462198 55854.65626256166 -4.747059383447074 -0.2585566924249587 VQIHDTRPVKPELALVYIEYLLTHPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VQIHDTRPVKPELALVYIEYLLTHPK 26 2 H0Y6U5;Q86XI2;Q86XI2-2 H0Y6U5 NCAPG2 Condensin-2 complex subunit G2 0 84.10700000000001 0.00456 37659000.0 64362.0 68078.0 63078.0 65007.0 65054.0 93721.0 97952.0 76234.0 118650.0 96767.0 False True 64015.48214329044 70343.93507597991 71958.83411619526 73236.87953468217 73338.24129473291 87242.28786550344 93213.68754702236 81922.96818840818 89410.29732854482 90591.24721360335 0.7066409185464637 0.7764981412621168 0.7943243561546837 0.808432180671918 0.8095510719905433 0.9630321973578368 1.028948054189337 0.9043143869654825 0.9869639736576981 1.0 16.467084045587644 2.7997126282377827 3.133247505677963 0.9713759746287001 0.7759316801732163 0.8667982869172932 0.03890948994489924 0.09674703405291828 1.8856902933491049 0.013303834773134187 0.013826536176392316 630.5399794077864 -2.7997126282377827 -0.19544429445548372 VQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 VQIPVSRPDPEPVS(0.999)DNEEDS(0.936)Y(0.064)DEEIHDPR;VQIPVSRPDPEPVS(1)DNEEDS(0.81)Y(0.19)DEEIHDPR;VQIPVSRPDPEPVS(1)DNEEDS(0.615)Y(0.385)DEEIHDPR 172.51 2.3566e-12 3784950000.0 676913.0 800090.0 675140.0 691570.0 682916.0 754530.0 723210.0 717307.0 805300.0 789000.0 True False 673268.575620105 826720.511985382 770193.843577922 779122.69109173 769881.3046397424 702371.1170725697 688225.5693695081 770836.0907511425 606844.6054671484 738645.344503115 0.9114909890524134 1.1192387769552854 1.0427112948177173 1.0547994337063669 1.0422881703229845 0.950890873813133 0.931740211308684 1.043580788111082 0.821564245931004 1.0 19.494522304922068 2.7410488117119765 23.883468274391824 0.9583272549297448 1.0404630891848377 0.2512027470434671 0.07178050042187083 170.9900031623398 1641288.1436117261 0.021390448551440684 0.02171521364463497 550.8696068802116 -2.7410488117119765 0.08213583425509285 VQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 VQIPVSRPDPEPVS(1)DNEEDS(0.361)Y(0.639)DEEIHDPR;VQIPVSRPDPEPVS(0.988)DNEEDS(0.253)Y(0.76)DEEIHDPR;VQIPVSRPDPEPVS(1)DNEEDS(0.303)Y(0.697)DEEIHDPR 170.75 5.8099e-12 6478750000.0 1950710.0 1900600.0 1836670.0 1894790.0 1991440.0 2207070.0 2012040.0 1887300.0 2418910.0 2258730.0 True False 1940207.5941042579 1963860.3220630367 2095257.171378177 2134670.2197228037 2245038.079810352 2054500.4457839406 1914709.9384607868 2028139.909515217 1822802.042233379 2114575.917603954 0.9175398139891451 0.9287253797386973 0.9908640091542953 1.0095027574803834 1.0616966083460488 0.9715898250235983 0.9054817670629497 0.9591237148928289 0.8620177819384292 1.0 21.011936926325845 -0.682590288518494 7.617890912683507 1.0000146093320705 0.959389874734685 0.05297456881172824 0.054033921849478805 0.0 0.0 0.054772471630043854 0.012909995370650604 0.20768719052553022 0.682590288518494 -0.04062473459738558 VQIPVSRPDPEPVS(ph)DNEEDSYDEEIHDPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 VQIPVSRPDPEPVS(0.996)DNEEDS(0.004)YDEEIHDPR 83.29299999999998 0.0013315 979680000.0 180910.0 238520.0 223640.0 240000.0 209060.0 262920.0 219770.0 194600.0 266770.0 280840.0 True False 179936.00066099034 246458.99401161517 255126.56808627272 270383.97539224545 235682.5518042987 244744.95924710738 209138.8854970715 209122.0401587777 201028.108034858 262916.55076077965 0.6843844563620075 0.937403877003777 0.9703708927720004 1.0284022615155186 0.8964158061648223 0.9308845659921726 0.7954572844193482 0.7953932133738204 0.7646080379997371 1.0 18.00424543780367 2.241656441073869 24.987938181027992 0.818041942648284 0.9170990273899947 0.0791397010542817 0.1036337073348468 141.60241388961586 1142952.9966392703 0.03628802142037298 0.029161751582294636 174.44416251185973 -2.241656441073869 0.09905708474171071 VQIS(ph)PDSGGLPER ddPTM_BT-474_Trastuzumab_2h_R1 4 VQISPDSGGLPER 13 0 A0A087WTP3;Q92945;M0QYH3;M0QXW7 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 VQIS(0.998)PDS(0.002)GGLPER;VQIS(0.932)PDS(0.068)GGLPER;VQIS(0.997)PDS(0.003)GGLPER;VQIS(0.802)PDS(0.198)GGLPER 240.5 7.888500000000001e-17 9044700000.0 3175870.0 3576310.0 3282590.0 3348860.0 3383860.0 3385860.0 3481950.0 3098360.0 3810200.0 3371300.0 True False 3158771.4687923277 3695345.316424953 3744750.139216236 3772825.3326336443 3814774.513290411 3151803.4676571228 3313514.776159289 3329575.356353286 2871227.264064235 3156140.747684855 1.0008335246485451 1.170843004747372 1.1864965597504318 1.19539197844746 1.2086832680350799 0.9986257646998431 1.049862804309305 1.0549514811073148 0.9097272566726898 1.0 21.58973011290725 2.7297217519093167 24.834338309808142 1.013981928186108 1.1577486976683329 0.5575958441935738 0.0662554966479747 474.30199280038573 1332630.9604829648 0.0215993387432029 0.020650106984999264 536.6878357170704 -2.7297217519093167 0.1437667694822249 VQLAEPDLEQAAHLIQALSNHEDVIHVYDNIE ddPTM_BT-474_Trastuzumab_2h_R1 1 VQLAEPDLEQAAHLIQALSNHEDVIHVYDNIE 32 0 Q9BSH4 Q9BSH4 TACO1 Translational activator of cytochrome c oxidase 1 0 98.637 2.5071e-05 10455000.0 2411.0 3098.7 5023.3 4627.5 3383.7 5527.8 3815.2 1843.4 4551.0 4355.4 False True 2398.019443887283 3201.8383562962927 5730.53697669368 5213.3410255317385 3814.5941382388087 5145.676197041541 3630.644200520664 1980.963868595531 3429.467030275666 4077.43464315446 0.5881196521232486 0.7852580449503483 1.4054270584850665 1.2785835903671279 0.9355377760972993 1.2619886392736017 0.8904236409076709 0.4858358360007903 0.841084488266009 1.0 11.993446036951147 1.99849620277783 24.937317327742342 0.7109154835548326 1.0550818173828491 0.16471114727160208 0.2591966914091708 75.71724931403304 1255624.0896941295 0.1018353151098513 0.07414072706744217 99.65433668923328 -1.99849620277783 0.34416633382801654 VQLEELRDDLELYYK ddPTM_BT-474_Trastuzumab_2h_R1 1 VQLEELRDDLELYYK 15 1 Q14746-2;Q14746;V9GY21 Q14746-2 COG2 Conserved oligomeric Golgi complex subunit 2 0 164.62 1.3416e-06 36762000.0 52216.0 71881.0 65474.0 73797.0 68793.0 72603.0 75892.0 65273.0 102960.0 78634.0 False True 51934.87485774298 74273.5156320179 74692.17008978999 83139.69263342311 77553.38078194352 67584.12549907868 72220.81402440618 70144.00270957807 77586.88759331638 73615.51079804567 0.705488208867006 1.0089383993514272 1.0146254407538922 1.1293773789263755 1.053492395029369 0.9180690966675041 0.9810543082766123 0.9528427086787291 1.0539475546962604 1.0 16.167722153899668 4.73856011994131 13.827424992610409 1.0090129037015296 0.7054160799799857 0.7333285182577235 0.05550264662011251 0.02922949420489296 1341.116981078457 0.014414657076097737 0.08288028136141615 54772.19175605676 -4.73856011994131 -0.30359682372154395 VQLPTETLQELLDLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQLPTETLQELLDLHR 16 0 P32456;P32455 P32456 GBP2;GBP1 Interferon-induced guanylate-binding protein 2;Interferon-induced guanylate-binding protein 1 0 ; 224.86 7.411e-15 417930000.0 211499.0 258950.0 246340.0 244220.0 216753.0 265390.0 283580.0 221849.0 258810.0 262990.0 False True 210360.312883748 267568.9942114196 281022.53077433555 275138.2269595593 244355.20975431506 247044.21396086205 269862.1520191996 238404.49890639557 195029.7433763229 246205.753042933 0.8544086004646109 1.086769869933792 1.1414133394573085 1.117513395032573 0.9924837528540803 1.0034055293491977 1.096083859470747 0.9683140867338829 0.7921412922561314 1.0 17.90950494783326 1.5031528307715079 5.215679049892222 0.8903318756065228 1.0461284026154214 0.2941767015810739 0.09039395007487114 0.1705904976967276 10.314166147605778 0.052847354336895955 0.02270726141285565 31.853182566664252 -1.5031528307715079 0.15579652700889857 VQLS(ph)ESPASLPSCPPVETALINQR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQLSESPASLPSCPPVETALINQR 24 0 H7C3T2;Q2TAZ0-3 H7C3T2 ATG2A Autophagy-related protein 2 homolog A 1 VQLS(0.7)ES(0.293)PAS(0.007)LPSCPPVETALINQR;VQLS(0.67)ES(0.324)PAS(0.006)LPSCPPVETALINQR 125.62 6.2839e-05 259060000.0 77144.0 89882.0 86979.0 85989.0 83430.0 101488.0 91333.0 86135.0 108319.0 111364.0 True False 76728.66527550422 92873.6680351837 99224.88716497913 96875.19858334928 94054.31597164764 94472.37343705479 86914.873864058 92562.83108466752 81625.2338502373 104256.6541764829 0.7359594059638627 0.8908176534993115 0.951736730367482 0.9291991897165769 0.9021420907334604 0.9061519783392862 0.8336626045655637 0.887836194397526 0.7829258908698937 1.0 16.669779940994506 VQMTS(ph)PSSTGSPMFK ddPTM_BT-474_Trastuzumab_2h_R1 3 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 VQMT(0.047)S(0.83)PS(0.025)S(0.034)T(0.047)GS(0.016)PMFK;VQMT(0.002)S(0.865)PS(0.093)S(0.03)T(0.01)GSPMFK;VQMTS(0.85)PS(0.107)S(0.032)T(0.008)GS(0.002)PMFK 190.15 2.3989e-07 449700000.0 1376960.0 1508500.0 1431640.0 1436950.0 1289660.0 1443180.0 1252360.0 1178780.0 1412410.0 1312410.0 True False 1369546.6003546393 1558709.510592494 1633202.4679620448 1618867.722666196 1453890.5565863014 1343416.3634803 1191778.562320207 1266746.549323554 1064340.4808243578 1228650.8701892705 1.1146751559649033 1.2686350113050249 1.3292648933789093 1.3175978318534163 1.1833227744854267 1.0934077336984673 0.9699895969117872 1.0310061060131874 0.8662676327738237 1.0 20.22864359129755 2.60901654146938 1.7330511953299843 0.9710378341769837 1.262463937623292 0.7836138255142411 0.06880960833129521 0.16464436154389944 0.9907956454370207 0.028910031584620882 0.025481114010284807 406.4588101307843 -2.60901654146938 0.29142610344630826 VQNS(ph)PPVGR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQNSPPVGR 9 0 O95359-3;E9PBC6;E7EMZ9;O95359;O95359-5;D6RAA5;O95359-1;O95359-6;Q4VXL8;E9PGB3;H0Y8P9;H0YA73 O95359-3 TACC2 Transforming acidic coiled-coil-containing protein 2 1 VQNS(1)PPVGR;VQNS(1)PPVGR;VQNS(1)PPVGR 147.83 9.5952e-05 1149500000.0 1396880.0 1468180.0 1318240.0 1452850.0 1399930.0 1465860.0 1435750.0 1322250.0 1712440.0 1506590.0 True False 1389359.3532879595 1517047.4837664487 1503836.7336525146 1636780.6610359352 1578202.7874648054 1364528.5484632773 1366297.2874023758 1420923.009249453 1290432.1075203817 1410438.1363434077 0.9850551523584753 1.0755859790486295 1.0662195631998754 1.1604767475157227 1.1189450616787286 0.9674501229815353 0.9687041580884448 1.007433770142679 0.9149157799049987 1.0 20.42771195814885 2.7297891435732535 24.93549990206824 0.9748417810345682 1.0845072114151486 0.5691154556741568 0.047582226750259866 481.84688277628254 1369788.5867436286 0.015854442454120824 0.015162030783542993 536.7711227357264 -2.7297891435732535 0.10966543038058041 VQPTHVIHLAAMVGGLFR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQPTHVIHLAAMVGGLFR 18 0 Q13630;E9PP14;A0A0J9YX13;E9PKL9;E9PLH9 Q13630 TSTA3 GDP-L-fucose synthase 0 ; 157.54 2.0835e-09 227100000.0 151636.0 186253.0 178528.0 176298.0 163393.0 191945.0 185682.0 128585.0 207020.0 193759.0 False True 150819.60862434347 192452.3185126838 203663.1906068062 198617.30872375882 184200.13004381408 178676.29393992882 176699.85228587687 138180.66564139997 156002.6949258777 181393.1347345745 0.8314515808166164 1.0609680393598786 1.1227723193869414 1.094954938699239 1.0154746502029801 0.985022361520897 0.974126460433218 0.7617745062049583 0.8600253540694931 1.0 17.468760329025347 1.9435585230945667 5.469997866223845 0.8502901090975189 1.0251677193998934 0.3175219137333464 0.09239378460223625 0.2072861518911662 13.181371089788795 0.040997465026605256 0.025067450893839074 87.81294109304322 -1.9435585230945667 0.17487761030237448 VQQAELHTGSLPR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQQAELHTGSLPR 13 0 Q13085;Q13085-4;Q13085-3;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;; 171.21 2.5479e-05 1898960000.0 1138390.0 1502530.0 1505830.0 1469960.0 1458700.0 1587110.0 1555490.0 1462660.0 1629700.0 1616580.0 False True 1132261.0347270188 1552540.8027514354 1717837.7750910067 1656056.785281607 1644456.7986077215 1477396.821355079 1480245.0061511542 1571811.1164369874 1228082.2718611865 1513408.4803762324 0.7481529602936673 1.025857078827439 1.1350787294808558 1.0942563139793642 1.0865915051559052 0.9762049311285735 0.9780868981143586 1.0385901340041628 0.8114678143972643 1.0 20.529370003723486 -0.5719142272673008 7.67982940937581 0.9999950170504857 1.001790372007129 0.0 0.11713730394140678 0.0 0.0 0.11107456663993695 0.026180526429485505 0.2679697510181148 0.5719142272673008 0.0017953549566434024 VQQLLHICSEHFDSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VQQLLHICSEHFDSK 15 0 Q13200;Q13200-3;Q13200-2;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ; 215.0 1.3876e-12 2681700000.0 2343400.0 2431000.0 2490600.0 2483100.0 2413600.0 2870700.0 2808900.0 1658430.0 3242100.0 2732400.0 False True 2330783.3947762153 2511914.365429466 2841254.8313167174 2797460.2054020194 2720957.6534719975 2672255.2659009257 2673022.7759599723 1782190.4679369028 2443127.896914249 2558015.8926746645 0.9111684573386858 0.981977622821962 1.1107260277206088 1.0936054828326307 1.0636984943150454 1.044659368049044 1.0449594092103378 0.6967081295470148 0.9550870672502786 1.0 21.286593796879025 1.7770492803510118 24.999999905997885 0.8522995326581339 1.0402712851312232 0.3475769125990589 0.09222448867817276 42.9915390644411 27936.01913878699 0.041761773883228936 0.02318983542740757 59.847950199418634 -1.7770492803510118 0.1879717524730894 VQS(ph)LPSVPLSCAAYR ddPTM_BT-474_Trastuzumab_2h_R1 4 VQSLPSVPLSCAAYR 15 0 Q96AD5-2;Q96AD5 Q96AD5-2 PNPLA2 Patatin-like phospholipase domain-containing protein 2 1 VQS(0.998)LPS(0.002)VPLSCAAYR;VQS(0.99)LPS(0.01)VPLSCAAYR;VQS(0.937)LPS(0.063)VPLSCAAYR;VQS(0.998)LPS(0.002)VPLSCAAYR 274.08 1.9046999999999998e-33 3595610000.0 1056400.0 756440.0 788120.0 795030.0 770850.0 812650.0 671520.0 754780.0 1090620.0 944780.0 True False 1050712.4597770735 781617.6481223637 899080.4455381577 895680.7164837369 869013.1783140897 756473.4182723343 639036.0121444841 811105.5162951798 821851.3145592724 884483.3315331484 1.1879392435307812 0.883699692528429 1.0165035490038088 1.0126598032448832 0.9825093897561156 0.8552715368429568 0.7224963878480218 0.917038781148338 0.9291880188795523 1.0 19.754475429403357 2.8367943721451354 4.157453421962885 0.8695109128262075 1.0124838898165556 0.3175854586926149 0.09603993709969703 0.26923209661454617 8.197685616859722 0.029296712120656987 0.031110385218243067 686.7432068505302 -2.8367943721451354 0.14297297699034806 VQS(ph)PSQTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQSPSQTR 8 0 Q12830-4;Q12830;F5GXF5;E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-2;J3KSK9 Q12830-4 BPTF Nucleosome-remodeling factor subunit BPTF 1 VQS(0.905)PS(0.095)QTR;VQS(0.906)PS(0.094)QTR 103.18 0.0050583 626590000.0 892820.0 966290.0 832320.0 817750.0 783800.0 828660.0 903470.0 818110.0 1085790.0 909930.0 True False 888013.156321628 998452.378515359 949503.421344869 921277.0661542035 883612.2840534275 771376.6846558193 859765.7045094367 879161.5224784042 818211.603340588 851857.4883697331 1.0424433293661466 1.1720885149770488 1.1146270758997594 1.081492008619099 1.03727712219149 0.9055231599032647 1.0092834966501711 1.0320523496963383 0.9605029180484921 1.0 19.700252569184514 3.2016401116700584 2.7132475297574143 0.9888403169004863 1.1126874356336438 0.6228429310862402 0.04409877474744335 0.17727985967452603 2.669218235373045 0.013508732760145345 0.017601917017677878 1590.8898524004683 -3.2016401116700584 0.12384711873315746 VQSGMGLILQGYES(ph)GS(ph)EEEGEIHEK ddPTM_BT-474_Trastuzumab_2h_R1 6 VQSGMGLILQGYESGSEEEGEIHEK 25 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 VQSGMGLILQGY(0.003)ES(0.997)GS(0.999)EEEGEIHEK;VQSGMGLILQGY(0.07)ES(0.961)GS(0.969)EEEGEIHEK;VQSGMGLILQGY(0.006)ES(0.996)GS(0.998)EEEGEIHEK;VQSGMGLILQGY(0.029)ES(0.973)GS(0.998)EEEGEIHEK;VQSGMGLILQGY(0.004)ES(0.998)GS(0.998)EEEGEIHEK;VQSGMGLILQGY(0.005)ES(0.996)GS(0.999)EEEGEIHEK 116.97 0.00060131 672901000.0 1191170.0 1035530.0 851850.0 953404.0 999157.0 1204696.0 1159857.0 1098938.0 1513203.0 1247760.0 True False 1184756.873071429 1069996.9900588961 971783.0755870661 1074104.8486452852 1126393.721482483 1121418.2010693508 1103750.2858259853 1180946.3338540946 1140294.3965313626 1168126.8885389187 1.0142364538439064 0.9159938021778076 0.8319156806693856 0.9195104223555411 0.9642734299964321 0.9600140293594384 0.9448890327373124 1.01097436026938 0.9761734000983671 1.0 20.155765565736367 2.4704397460160004 1.0222972319468828 0.9940968976216502 0.9178233595260721 0.2785896570420683 0.044333814891149 0.6752015257902314 1.4190526695109436 0.029350573236826057 0.020597128029492397 295.4198994697684 -2.4704397460160004 -0.07627353809557813 VQSHQQASEEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VQSHQQASEEKK 12 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 0 ; 102.66 0.0015125 46037000.0 137611.0 95729.0 96341.0 85477.0 80713.0 129728.0 128851.0 132196.0 222280.0 144636.0 False True 136870.11766601942 98915.28189559752 109904.97538901631 96298.37943584565 90991.32212656835 120760.20870686429 122617.98487137965 142061.13679768634 167502.07239940116 135405.2066508906 1.010818719983979 0.7305131341856486 0.8116746623516446 0.7111866804658967 0.6719927865194086 0.891843169799335 0.9055632933489796 1.0491556440954033 1.2370430690399115 1.0 17.046923689457536 1.8978363286459385 1.6712215937639 1.1210999897433027 0.7871979757342688 0.6088767034589059 0.10508732198995742 0.22938876226738603 1.1983867986034213 0.06972899426124439 0.03152956000172884 79.03807032859234 -1.8978363286459385 -0.33390201400903397 VQSVETVEGCTHEVALPAEEDYLPLKPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQSVETVEGCTHEVALPAEEDYLPLKPR 28 1 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 95.823 0.0012833 192500000.0 92277.0 147680.0 138830.0 156890.0 139360.0 124510.0 125870.0 76615.0 91736.0 122590.0 False True 91780.19088493857 152595.43952555492 158376.05726800798 176752.25791370575 157106.66994856528 115902.91676501362 119781.18722990566 82332.4003430871 69128.89199942176 114766.2012454206 0.7997144620015101 1.329620026363326 1.379988668696373 1.5401072440807875 1.3689280314559 1.0099046191932608 1.043697412043471 0.7173923981941707 0.602345387834122 1.0 16.808338303950073 2.221386504767992 1.6446011128001632 0.7564709105013758 1.2978556110658725 0.49823226012925126 0.21230637182489182 0.29373887026140244 1.569854282502915 0.11816901406291527 0.07128785524767793 166.48936802183584 -2.221386504767992 0.5413847005644967 VQT(ph)TPSKPGGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 VQT(0.605)T(0.35)PS(0.045)KPGGDR 132.44 0.00029255 740110000.0 1921700.0 1209200.0 1032000.0 1042400.0 973660.0 1967200.0 1867300.0 1486100.0 2925400.0 2283100.0 True False 1911353.7807209417 1249447.491023165 1177296.6296951976 1174367.733120319 1097649.8296650404 1831212.094290697 1776971.5652212836 1597000.328262893 2204474.368351667 2137390.6033397485 0.8942463664499992 0.5845667558708544 0.5508102392962849 0.549439925152346 0.5135466713243352 0.856751260826806 0.8313742759253749 0.7471728965999586 1.0313858238672418 1.0 21.02741915069903 2.722965264592234 23.466775592302035 0.861947075345078 0.6090359440076678 0.5342588259738198 0.1264542448940543 311.53194261396743 468769.819852408 0.041077238221536805 0.03887970894244745 528.4029877630215 -2.722965264592234 -0.25291113133741017 VQTEKEEKEEAR ddPTM_BT-474_Trastuzumab_2h_R1 3 VQTEKEEKEEAR 12 2 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ;; 130.61 0.00012001 1024050000.0 1787780.0 1592350.0 1459130.0 1496900.0 1432310.0 1990260.0 2135350.0 1776270.0 3459560.0 1992760.0 False True 1778154.7911210314 1645350.4071540965 1664562.8210146835 1686407.3865193843 1614706.188533508 1852678.0107680983 2032054.962670845 1908824.2871162982 2606997.7937289565 1865580.3507123275 0.9531376069875979 0.8819509738756943 0.8922493316243976 0.9039585916926439 0.865524868932593 0.9930840073764162 1.0892347584465891 1.0231798841510413 1.397419195980241 1.0 20.831193067821292 2.133712895653488 1.2809911559826792 1.1588844384262311 0.8973752280750924 0.5263007761408398 0.10244170340238706 0.34732942138488715 1.0794721271717618 0.06550559401558835 0.03417161741714749 136.05449530661704 -2.133712895653488 -0.2615092103511387 VQTT(ph)PPPAVQGQK ddPTM_BT-474_Trastuzumab_2h_R1 2 VQTTPPPAVQGQK 13 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 VQT(0.004)T(0.996)PPPAVQGQK;VQT(0.022)T(0.978)PPPAVQGQK 222.88 1.8684e-10 253590000.0 866100.0 797550.0 751250.0 732610.0 730470.0 952780.0 914650.0 826830.0 1040500.0 931650.0 True False 861437.0138327567 824095.9696208438 857019.4700179421 825358.3508838047 823491.0246651007 886916.561202872 870404.8851976892 888532.253157667 784082.7169856796 872191.2993743058 0.9876698087343178 0.944856902622206 0.9826049292543417 0.9463042700333079 0.9441633105671408 1.0168830643450923 0.9979518092213278 1.0187355157006084 0.8989802094427751 1.0 19.73428507318911 2.749480906328081 24.869837954016354 0.9911899062496915 0.9605868767482922 0.11128932656635815 0.03461835843301198 1275.3303165384893 2904434.0463087433 0.010361982901960672 0.01090752123721101 561.6695841194405 -2.749480906328081 -0.03060302950139926 VQTT(ph)PSKPGGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 VQT(0.146)T(0.849)PS(0.005)KPGGDR 90.498 0.01427 580670000.0 1255800.0 779670.0 641550.0 659390.0 604640.0 1200500.0 1288700.0 953120.0 1787900.0 1460800.0 True False 1249038.9123324964 805620.8446295314 731874.6635474347 742868.7063912206 681637.3200179423 1117512.2606730286 1226360.657687928 1024246.6542452928 1347296.00163258 1367570.4933461992 0.9133268949641657 0.5890890806354866 0.5351641228794495 0.5432032279181122 0.4984293850550244 0.8171514858723494 0.8967440169663532 0.7489534610674038 0.985174810503544 1.0 20.38318377000547 2.5963494936498708 5.351244252795822 0.8705957284030647 0.6067572714739199 0.5381660462704244 0.1268752602299297 0.19490049350270902 7.7826469624599515 0.04210786465880263 0.03945208487427607 394.77486495859836 -2.5963494936498708 -0.26383845692914476 VQVAALQAS(ph)PPLDQDDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VQVAALQASPPLDQDDR 17 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR 257.93 3.9897e-27 371950000.0 194237.0 209215.0 196103.0 194179.0 178016.0 190177.0 177295.0 190991.0 194256.0 188421.0 True False 193191.2495737596 216178.59480186188 223712.59784216783 218762.04149037832 200685.2824165028 177030.51161850453 168718.56351732826 205243.718252647 146384.2116970401 176395.81046466623 1.0952145012109438 1.22553134472071 1.2682421269125301 1.2401770819505855 1.1376986895995582 1.0035981645605208 0.9564771582323052 1.1635407763483094 0.8298621793308536 1.0 17.428456770629147 2.906509415262114 3.2447873976252497 1.0113725370837994 1.211958245465671 0.5727341247992175 0.08804398560065024 0.20182641488301173 4.055189535389874 0.028115972396405547 0.030740422750032338 806.32368181289 -2.906509415262114 0.20058570838187162 VQVEYK ddPTM_BT-474_Trastuzumab_2h_R1 3 VQVEYK 6 0 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;; 121.29 0.045867000000000005 1859960000.0 2253940.0 1991660.0 1927900.0 1723890.0 1677050.0 2203320.0 2071520.0 2006310.0 3394200.0 2216770.0 False True 2241805.037476277 2057951.199116108 2199331.5623927983 1942134.2972455774 1890612.3768458755 2051009.6744573894 1971312.663625123 2156031.0400357484 2557744.8899498275 2075293.8407277209 1.080234997801645 0.9916432838226266 1.0597687514080332 0.93583581232263 0.9110094868218348 0.9882984443967626 0.9498956846197086 1.0389039844496026 1.2324736091602964 1.0 20.98488419134889 1.4623573267857084 6.376652827191176 1.123382387258082 0.9871123670576215 0.33552919480945975 0.07142889017793443 0.15019571613854307 14.853787083216082 0.04111733528146488 0.01735419458892615 28.997284314888866 -1.4623573267857084 -0.13627002020046042 VQVEYKGETK ddPTM_BT-474_Trastuzumab_2h_R1 4 VQVEYKGETK 10 1 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;;; 114.82 0.0011904 1281060000.0 1724220.0 1659670.0 1520490.0 1472780.0 1537030.0 1867920.0 1959990.0 1562470.0 3412920.0 1994270.0 False True 1714936.991098852 1714911.1126582993 1734561.7756640022 1659233.7969924652 1732761.6598094369 1738795.0870107168 1865177.7958110957 1679069.4454618967 2571851.5967849796 1866993.9812195557 0.9185551792612757 0.9185413182414691 0.9290666135575615 0.8887194140329377 0.9281024348442539 0.9313340613315223 0.9990272141063499 0.8993437913308627 1.3775360942004737 1.0 20.832285845962367 1.2634507127297876 24.9999999771373 1.188768199071907 0.9275433939162914 0.582393506044625 0.08880209831606475 115.99645989872961 116508.99574417606 0.05218692734611934 0.019040224589370484 18.34216993442008 -1.2634507127297876 -0.26122480515561564 VQVNHEK ddPTM_BT-474_Trastuzumab_2h_R1 5 VQVNHEK 7 0 P19367-4;P19367-2;P19367;P19367-3;B1AR62 P19367-4 HK1 Hexokinase-1 0 ;;;; 120.46 0.0045528 2850900000.0 3616300.0 3619820.0 3299370.0 3344480.0 3071610.0 3447560.0 3791410.0 3443320.0 4520440.0 3581160.0 False True 3596830.2426086967 3740303.520472604 3763892.6173618576 3767890.825082742 3462761.326641169 3209238.291883304 3608005.0137072853 3700278.023224674 3406438.1327926465 3352607.302814669 1.0728456743469452 1.1156402115250557 1.1226762568350594 1.1238688235032548 1.0328562261777634 0.9572365630740587 1.0761788327187016 1.1037015937172598 1.0160564077793377 1.0 21.676852076774203 7.999999999674647 0.08898576518308332 0.9592249260764376 1.3851186100417312 0.2867578272764595 0.046429366772399984 240.51883892774404 1.5395162176217212 0.9768282845855588 12.512277560522328 99999999.92508468 -7.999999999674647 0.4258936839652936 VRAS(ph)LSDLSSLDDVEGMSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VRASLSDLSSLDDVEGMSVR 20 1 A0A087WTM5;H7BYJ1;Q969K3;Q969K3-2 A0A087WTM5 RNF34 E3 ubiquitin-protein ligase RNF34 1 VRAS(0.987)LS(0.013)DLSSLDDVEGMSVR 114.74 7.255300000000001e-05 75379000.0 24091.0 35381.0 29296.0 32857.0 30909.0 32636.0 24929.0 18589.0 33614.0 31883.0 True False 23961.29673276173 36558.63519673383 33420.62215460317 37016.69283109589 34845.07793800377 30379.950136880416 23723.089031972013 19976.20557302936 25330.280104523463 29848.19964359039 0.8027719265777287 1.2248187707557243 1.119686364794867 1.2401650107243525 1.1674097049095025 1.017815161371189 0.7947912877574952 0.6692599825637744 0.8486367823515578 1.0 14.865356294503679 2.349447185256438 3.3800813989558547 0.7845028199827715 1.1230432298335709 0.4679951791900785 0.13894496869282003 0.17401281972370183 3.9200191863430645 0.05069169661451772 0.0407519236206264 223.5873276652897 -2.349447185256438 0.33854040985079936 VRDALTAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VRDALTAEK 9 1 Q9HB71;B2ZWH1;Q9HB71-2 Q9HB71 CACYBP Calcyclin-binding protein 0 98.754 0.0052895 210440000.0 181820.0 216300.0 215820.0 151740.0 94302.0 169260.0 248280.0 149520.0 446830.0 243040.0 False True 180841.101322101 223499.4147438889 246205.58005893158 170950.26844174723 106310.80072825484 157559.4545951826 236269.74787829482 160677.941647176 336714.7337152442 227528.9791229875 0.7948046970506993 0.9822898850307745 1.0820844931838274 0.7513340458902271 0.46724070550499003 0.6924808224538997 1.0384160680938255 0.7061867119806478 1.4798762558207494 1.0 17.79569077963597 1.2495313874245706 24.999797949778834 1.2399381924665467 0.8167764275833539 0.4101650843816187 0.20412454272949354 184.30198169131498 419986.9266909285 0.14228119031951947 0.050868520599816724 17.763616452417224 -1.2495313874245706 -0.4231617648831928 VRDGPQWR ddPTM_BT-474_Trastuzumab_2h_R1 1 VRDGPQWR 8 1 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 63.673 0.090401 0.0 292670.0 280770.0 270870.0 298490.0 331250.0 309820.0 386820.0 270090.0 288340.0 361100.0 False True 291094.2972386939 290115.2597209511 309006.1415557534 336278.80339513085 373432.72402742686 288402.87263783196 368108.0388041001 290245.4872892302 217282.47055805023 338054.2888467361 0.8610874254302615 0.8581913298916343 0.9140725373132236 0.9947479280394216 1.1046531174072172 0.8531259095150406 1.0889021407179649 0.858576556680868 0.6427443097950453 1.0 18.366895424969886 -1.0047476708238505 4.30274232065935 1.00000346415269 0.9175802552471841 0.040677486157469356 0.12657159176997174 373299340934.0772 86351444466.89041 16763623.764361525 0.02944137099505951 0.09891276201830718 1.0047476708238505 -0.08242320890550592 VRDVFEAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VRDVFEAK 8 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 ;; 132.01 0.00089427 1115020000.0 730340.0 778660.0 718790.0 624430.0 550900.0 757030.0 823480.0 653080.0 1366320.0 867390.0 False True 726407.9305884026 804577.22739009 819989.3841653202 703482.7739757503 621053.8495598786 704698.2979569377 783645.1264009118 701816.1458730436 1029608.7437499998 812032.4275900597 0.894555323048154 0.9908190856095549 1.0097988162848066 0.8663234990054993 0.764814099115518 0.8678203899422257 0.965041665548511 0.8642710833062237 1.2679404279526871 1.0 19.63117781538081 1.2537340282601661 24.999987653194996 1.1339702547810724 0.9035586294083993 0.5098131732778219 0.09061784152237412 161.67964621674352 266388.7321644691 0.06105017157947511 0.022104946568987004 17.936348279632956 -1.2537340282601661 -0.23041162537267312 VRDVYWK ddPTM_BT-474_Trastuzumab_2h_R1 1 VRDVYWK 7 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 122.13 0.012232 0.0 298650.0 317000.0 276230.0 257380.0 269670.0 328130.0 315650.0 275320.0 418690.0 348910.0 False True 297042.1015831347 327551.15336945304 315120.7829657988 289964.2816102344 304010.8760406834 305447.145434936 300380.80359990225 295865.7764466325 315509.45965856244 326642.2650831203 0.9093804854296693 1.0027825189312272 0.9647275219745686 0.8877120709913259 0.9307150621286626 0.9351121336279283 0.9196017653241066 0.9057792211039923 0.9659174374702401 1.0 18.31735195143793 7.181161420159091 8.487614596779252 0.9376338068258572 0.07924736412971689 0.0 0.0378846364609638 0.0 0.0 0.008232942308916214 0.0 15176143.350825101 -7.181161420159091 -0.8583864426961403 VREAAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VREAAEK 7 1 P38646;H0YBG6;A0A3B3ITN1 P38646 HSPA9 Stress-70 protein, mitochondrial 0 88.37 0.017016 339680000.0 372340.0 384650.0 358860.0 311990.0 336210.0 364070.0 399320.0 327450.0 532060.0 414410.0 False True 370335.3628108631 397452.84272416454 409384.3687329636 351487.9020109443 379024.3506272037 338902.69782859634 380003.36604946334 351885.9817574088 400940.9422387325 387961.9990057495 0.954566075440226 1.0244633333747577 1.055217701172059 0.9059853875166144 0.9769625674642085 0.8735461171380703 0.9794860502402758 0.9070114667395401 1.0334541611452792 1.0 18.565555821357275 3.7376697199689177 24.999802984441814 0.9467924495792092 1.0127204653291304 0.2015806512374777 0.05124355335337461 101.81003206084215 2856943.2869821414 0.012584747026012076 0.02084463613338195 5466.001165611756 -3.7376697199689177 0.06592801574992124 VREDKQPEQATTSAQVACLYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VREDKQPEQATTSAQVACLYR 21 2 P18858;P18858-3;F5GZ28 P18858 LIG1 DNA ligase 1;DNA ligase 0 188.26 1.4523e-17 76974000.0 58009.0 46969.0 47829.0 50670.0 39539.0 54586.0 62481.0 47295.0 74847.0 55109.0 False True 57696.685989405814 48532.334771639915 54562.907462879404 57084.81680468782 44574.05728398625 50812.59830162264 59458.55532940122 50824.393059143804 56401.95974841639 51591.89643881136 1.118328457994073 0.9406968559335646 1.05758677678367 1.1064686655275626 0.8639740029105472 0.9848949507387661 1.1524785757763298 0.9851235672141297 1.0932329230291007 1.0 15.654856858266875 -0.6663179323537862 7.874061410197523 1.0000321494198516 1.0292639544810565 0.011449511701424941 0.08546987167713781 0.0 0.0 0.0786944782979428 0.018548466415470987 0.21561653752394216 0.6663179323537862 0.02923180506120482 VREEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 VREEAER 7 1 Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-5;Q14244-3;Q14244-2;Q14244-4 Q14244-6 MAP7 Ensconsin 0 ; 69.628 0.054013 414640000.0 148015.0 212887.0 202318.0 216066.0 193053.0 172835.0 190900.0 146294.0 195532.0 185315.0 False True 147218.10368601236 219972.8151020909 230802.61582041916 243419.93344625397 217637.15523522097 160887.3232598273 181665.4376911813 157211.20114587975 147345.75859456416 173488.03804384632 0.8485778347946119 1.2679422603562807 1.3303661648538991 1.4030934708290002 1.254479315629915 0.9273683942357203 1.0471352361784636 0.9061789096153542 0.8493136486869768 1.0 17.40447666721293 2.739005382286578 24.98184877373749 0.9458965865499933 1.2397099549369546 0.467297383470485 0.14606086234169097 35.21612340089614 1978087.6416008447 0.04697452130016857 0.047111107230479406 548.28375985415 -2.739005382286578 0.29381336838696126 VREEEIEVDSR ddPTM_BT-474_Trastuzumab_2h_R1 5 VREEEIEVDSR 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 ;;;; 182.23 5.3578e-06 3968810000.0 4628880.0 6003800.0 5499720.0 5470180.0 5572500.0 5690480.0 5899830.0 5547500.0 7187970.0 5912140.0 False True 4603958.624396914 6203632.8536262605 6274032.771576806 6162704.227129816 6282124.844204789 5297110.511549069 5614432.6833607275 5961482.619634213 5416591.107363346 5534822.163562292 0.8318169018521344 1.1208368887562437 1.1335563431253493 1.1134421387016 1.1350183725074776 0.9570516188255941 1.0143835732108142 1.0770865699860745 0.9786386892469097 1.0 22.40010553260589 2.7388951472724723 24.999712715476676 1.0164318431562829 1.0762137369407963 0.09658847850255514 0.08874721777579953 80.79846507557487 6038247.653084018 0.028028792092197004 0.02803316329297496 548.1446091153002 -2.7388951472724723 0.059781893784513374 VREEFK ddPTM_BT-474_Trastuzumab_2h_R1 7 VREEFK 6 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 ;;;;;; 102.8 0.03213 30796860000.0 17984990.0 16755230.0 14397270.0 14143330.0 13486220.0 16939190.0 17288090.0 15318730.0 23055370.0 16500820.0 False True 17888160.81216025 17312917.701799564 16424280.472685795 15933874.12785171 15203610.177911455 15768223.665864173 16451799.039782768 16461891.419534788 17373682.989630133 15447723.540537257 1.1579803823663015 1.120742331798452 1.0632168830304283 1.031470694438486 0.9841974539494308 1.0207474016793396 1.0649982825372721 1.0656516072634388 1.1246759397291681 1.0 23.880890914719362 4.3129049883359345 2.363004649405742 1.0439469263922205 1.1551045383395533 0.5294284919824472 0.03702226527076548 0.2631712311630436 2.7754910998213047 0.010248272072201308 0.04153420219204466 20554.40872974629 -4.3129049883359345 0.11115761194733276 VREEILAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VREEILAK 8 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 110.88 0.0030464000000000003 1370030000.0 1294210.0 1349700.0 1295320.0 1095060.0 1121140.0 1451580.0 1400300.0 1275600.0 1774570.0 1393810.0 False True 1287242.1171602502 1394623.9485891208 1477689.7968767278 1233694.4837209682 1263910.5334825953 1351235.6912517734 1332562.1393345254 1370791.7493655526 1337251.0015197298 1304855.8524992217 0.9865013937706334 1.0687954120893615 1.1324544347534429 0.9454641915871731 0.9686208105376523 1.035544032441376 1.0212332165137148 1.0505311730334368 1.0248266112754607 1.0 20.31545901031793 6.98610885030748 0.004639416321600993 0.3449422754290983 1.7405520043826437 0.015862014163818494 0.05041632509457745 298591.8817406681 127.12365743444673 18040.468251403425 20257.98618739427 9685205.73026297 -6.98610885030748 1.3956097289535454 VREELIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VREELIDK 8 1 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ; 114.4 0.0024289000000000003 731640000.0 747010.0 735030.0 664110.0 647130.0 664030.0 842130.0 751500.0 738300.0 1179620.0 838310.0 False True 742988.1811606134 759495.029214983 757610.9154523993 729056.5916482668 748590.2844858334 783915.5352607886 715147.0739912135 793395.6950114357 888918.457098173 784808.3380866998 0.9467129044168406 0.9677458716437332 0.9653451405720208 0.928961322487537 0.9538510845983579 0.9988623938067633 0.9112378644379404 1.0109419797267587 1.1326567442762971 1.0 19.58198084378758 1.4932421463509251 5.389020852645517 1.0688932690698283 0.9554593582093516 0.6003783976888393 0.03712031414978736 0.08866580464417756 5.797174496106112 0.020136744151152852 0.008614625839442754 31.13451797457739 -1.4932421463509251 -0.11343391086047672 VREEVPLELVEAHVK ddPTM_BT-474_Trastuzumab_2h_R1 4 VREEVPLELVEAHVK 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 ;;; 181.51 3.5161e-07 685098000.0 723920.0 786100.0 704740.0 658130.0 673950.0 850540.0 786410.0 746090.0 1024140.0 865600.0 False True 720022.4951550729 812264.8632925145 803961.2662901098 741449.1905204105 759773.5376853878 791744.1717557991 748368.3439220637 801767.0243682546 771754.4197729115 810356.6669225565 0.8885254167025733 1.0023547611167372 0.9921079187800922 0.9149664842471997 0.9375791780312424 0.9770317245152792 0.9235048892287119 0.9894001704373924 0.9523638803438954 1.0 19.628197503848064 0.6584856544251354 0.688397826294285 1.0000025375896024 0.9519188596328257 0.1436017833472074 0.035311322588377575 2.557870155325623 2.29011425268374 0.03622366237144295 0.012991425651990175 4.5549713997814765 -0.6584856544251354 -0.048083677956776705 VREEYPDR ddPTM_BT-474_Trastuzumab_2h_R1 7 VREEYPDR 8 1 Q13509;A0A0B4J269;Q13509-2;G3V2A3 Q13509 TUBB3 Tubulin beta-3 chain 0 ;;;;;; 171.56 0.00026325 16669810000.0 7323630.0 9141720.0 8519070.0 7912790.0 7745340.0 8321600.0 8995390.0 7098540.0 9795270.0 9016470.0 False True 7284200.38981179 9445996.623913558 9718481.006916134 8914548.402683353 8731663.138773121 7746347.378939333 8560248.619973155 7628269.100455741 7381356.958393393 8441031.165211663 0.8629514862867036 1.1190571908848883 1.1513381264328548 1.0560970843732 1.034430861333536 0.9177015494107692 1.0141235652881875 0.9037129411267206 0.8744615218119861 1.0 23.008987820160264 2.849311324976659 3.9845898446704173 0.9394381110337345 1.0586213466729237 0.28149408873568815 0.0811968502421136 0.28622885649279683 7.955843236726187 0.02551601806758319 0.027191128468765507 706.8240611147824 -2.849311324976659 0.1191832356391892 VREFTMAEIEHFVDPSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VREFTMAEIEHFVDPSEK 18 1 P41250 P41250 GARS Glycine--tRNA ligase 0 110.74 0.00019526 20126000.0 50696.0 50625.0 40710.0 34877.0 40102.0 56726.0 50292.0 47141.0 77151.0 55845.0 False True 50423.0583688551 52310.02252154128 46441.614142336664 39292.42462398061 45208.751996823805 52804.665138640754 47859.183825903034 50658.900797147624 58138.16982043463 52280.924288690054 0.9644637897070066 1.0005565745680116 0.8883089726166794 0.751563312213299 0.8647274816180675 1.0100178192538956 0.9154234451102928 0.9689748505098001 1.112034085308084 1.0 15.673997026706553 1.4820272632262463 3.5012324787343547 1.055475925263018 0.9121062128277477 0.36143348402899556 0.07456752929939077 0.24640143182188076 6.053489874346153 0.057002291283652605 0.021023793133560797 30.34081645416954 -1.4820272632262463 -0.1433697124352702 VRELELELDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VRELELELDR 10 1 O94992 O94992 HEXIM1 Protein HEXIM1 0 ; 169.52 4.202e-06 112430000.0 112813.0 130176.0 122950.0 97452.0 109038.0 118908.0 131799.0 118332.0 164035.0 130800.0 False True 112205.62734270266 134508.82946694625 140260.29129944224 109789.4132080213 122923.34298114001 110688.16983932402 125423.37884892609 127162.5347177208 123610.7722063874 122452.23201648597 0.9163216177847718 1.0984595972806528 1.1454286213464753 0.8965897264595402 1.0038473040212987 0.9039293773299442 1.0242637213182044 1.038466450334696 1.0094611602485568 1.0 16.90185954551933 3.7401359187307572 24.998306159059812 0.9873081407987889 1.057908903040147 0.1733165295597502 0.07031439862363896 252.22511775192388 4002490.101995425 0.01853876896156599 0.03137250706166494 5497.128875269593 -3.7401359187307572 0.07060076224135803 VREYELR ddPTM_BT-474_Trastuzumab_2h_R1 3 VREYELR 7 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 ;; 160.63 0.0012212999999999998 5148600000.0 2894850.0 3742300.0 2998020.0 3204490.0 3219550.0 3333850.0 3366090.0 3014430.0 4242300.0 3663560.0 False True 2879264.4492480685 3866860.1932318765 3420115.15674302 3610178.10543624 3629540.608732082 3103388.7965387525 3203259.3669874705 3239382.0735653806 3196842.0089075943 3429748.464268487 0.8394972632088259 1.1274471680699822 0.9971912495549373 1.0526072518283744 1.0582527105252915 0.9048444306835365 0.9339633504787287 0.944495524180165 0.9320922633868521 1.0 21.70967134319772 2.7379757473111592 24.999752395827976 0.9393539186032239 1.0223462558204126 0.19406014794297655 0.07231515254808514 75.47375172660776 3225996.131747828 0.021218299154336193 0.02110911173491755 546.985416253226 -2.7379757473111592 0.08299233721718868 VRIDQYQGADAVGLEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VRIDQYQGADAVGLEEK 17 1 O43396;K7ER96;K7EML9 O43396 TXNL1 Thioredoxin-like protein 1 0 ; 182.34 6.8667e-10 625110000.0 847570.0 851450.0 729430.0 721120.0 800760.0 982550.0 975250.0 966270.0 1510760.0 1086020.0 False True 843006.7772938804 879789.9985376067 832127.403680783 812413.7180618998 902732.0395236302 914628.6311739151 928073.4316832079 1038377.9740196394 1138453.4411468408 1016709.2738114987 0.8291522453941702 0.8653309468097984 0.8184516706149985 0.7990619727665866 0.8878959430943478 0.8995970182755413 0.9128208580256107 1.0213125824326437 1.1197433430295571 1.0 19.95547577143777 1.9414921347252228 1.287997603739984 1.0656759410606529 0.839346593344827 0.842842138027367 0.038440103173308496 0.15861811036312093 0.48728863363986485 0.028509164023615034 0.01273694647998894 87.39611646046573 -1.9414921347252228 -0.2263293477158259 VRLDDDDEGVPSSALR ddPTM_BT-474_Trastuzumab_2h_R1 2 VRLDDDDEGVPSSALR 16 1 Q00535;Q00535-2 Q00535 CDK5 Cyclin-dependent-like kinase 5 0 ; 261.17 7.3475e-27 609740000.0 362470.0 483210.0 488860.0 550590.0 480230.0 502890.0 490610.0 434460.0 645380.0 528660.0 False True 360518.5017942028 499293.3527433868 557687.2387527073 620294.6375467362 541384.4439537855 468126.39797572634 466877.3199877965 466881.61134317867 486334.7466489366 494920.46619140264 0.728437246833874 1.0088355338901929 1.1268219377636943 1.2533218565805826 1.0938817061253103 0.945861870651932 0.9433380752681161 0.9433467460661035 0.9826523247087833 1.0 18.916837176901048 2.7286994912847273 23.663715164179457 0.9566094934393243 1.056826341860588 0.08361621691860965 0.1257195286741183 760.8363449060134 1825771.5695382333 0.04309789655160913 0.041138779732455305 535.4260429211141 -2.7286994912847273 0.10021684842126377 VRPCVVYGGADIGQQIR ddPTM_BT-474_Trastuzumab_2h_R1 2 VRPCVVYGGADIGQQIR 17 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 193.64 1.0844e-10 5544700000.0 1553380.0 1947890.0 1880250.0 1728030.0 1943030.0 2132910.0 1617730.0 1509160.0 2123690.0 1942900.0 False True 1545016.774676741 2012724.3411256291 2144972.8565740264 1946798.4208210923 2190463.3532589036 1985466.9520300804 1539474.2195712663 1621781.1825592027 1600335.0554880544 1818902.4585996217 0.8494225555482805 1.1065598001748986 1.1792676657468741 1.0703149097505416 1.2042775262095955 1.0915741757579993 0.8463753580038107 0.8916262523542998 0.8798355557340645 1.0 20.794636747680386 2.2473418146892388 24.750883140924255 0.8932689136695543 1.0938486679846513 0.44730991927697983 0.09681391555330549 135.987738008329 383298.2834184451 0.033567735564442466 0.027683802507253552 176.74283409736228 -2.2473418146892388 0.200579754315097 VRPDEIMR ddPTM_BT-474_Trastuzumab_2h_R1 1 VRPDEIMR 8 1 E9PKP7;P17480-2 E9PKP7 UBTF Nucleolar transcription factor 1 0 104.01 0.0042517 147380000.0 45294.0 62210.0 68722.0 69463.0 60063.0 63445.0 71991.0 65932.0 80619.0 75941.0 False True 45050.142136636474 64280.622243260856 78397.4602576679 78257.00867779809 67711.66702870748 59059.19648346545 68508.5202976733 70852.18063591224 60751.527689253766 71094.38036363895 0.6336667104518048 0.9041589773266668 1.1027237294519567 1.100748164306703 0.9524193991475935 0.8307153980579756 0.9636277853082157 0.996593264805349 0.8545194061544278 1.0 16.117447906455663 4.698899670418341 3.675661012188589 0.9753904682302663 0.609415423348596 0.5975386988794902 0.083644173979814 0.16753679770177413 4.126203489673331 0.021465417249231022 0.15557021503835777 49991.90316413948 -4.698899670418341 -0.3659750448816703 VRPEEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VRPEEK 6 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 ; 110.63 0.026025 481940000.0 648840.0 684120.0 634280.0 681170.0 655540.0 564190.0 768620.0 660650.0 849010.0 780150.0 False True 645346.7175329012 706890.5206407275 723581.1107394086 767406.0521580664 739019.1333100061 525188.8732604047 731438.9141864635 709951.0577127251 639782.861651141 730360.159079982 0.8836006585378777 0.9678656644294252 0.9907182117530716 1.0507227737131093 1.011855759274892 0.7190820401840827 1.0014770180068973 0.9720561135303907 0.8759826966151342 1.0 19.478248543338605 VRPGETLLIHSGSGGVGQAAIAIALSLGCR ddPTM_BT-474_Trastuzumab_2h_R1 1 VRPGETLLIHSGSGGVGQAAIAIALSLGCR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 146.23 2.2198e-08 153570000.0 87027.0 128700.0 95978.0 111400.0 100990.0 143730.0 131670.0 107980.0 150700.0 121100.0 False True 86558.45630160875 132983.7016992071 109490.86814426891 125503.2285779007 113850.47788537337 133794.28340402708 125300.61907175393 116038.01591132979 113562.00427654211 113371.29432107392 0.7634953523285207 1.1729927094471528 0.9657724100263386 1.1070106355359097 1.0042266745490476 1.1801425061366426 1.1052235031991033 1.0235220176873305 1.001682171458042 1.0 16.790695869715577 4.75187254632574 24.999999998922064 1.0633973637104028 0.763495157460794 0.6082499746753754 0.07193188190352398 1491.0652987012375 2800193.4342903355 0.01615574369709913 0.3238993694381014 56477.120542841694 -4.75187254632574 -0.29990220624960884 VRPSSDLNNSTGQS(ph)PHHK ddPTM_BT-474_Trastuzumab_2h_R1 6 VRPSSDLNNSTGQSPHHK 18 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 VRPSSDLNNST(0.006)GQS(0.994)PHHK;VRPSSDLNNST(0.006)GQS(0.994)PHHK;VRPSSDLNNSTGQS(1)PHHK;VRPSSDLNNS(0.001)T(0.007)GQS(0.992)PHHK;VRPSSDLNNS(0.005)T(0.001)GQS(0.993)PHHK;VRPSSDLNNS(0.013)T(0.134)GQS(0.852)PHHK 211.17 2.0011999999999999e-16 856012000.0 509285.0 505238.0 520063.0 472221.0 505628.0 635733.0 604945.0 372782.0 818385.0 638084.0 True False 506543.066146883 522054.5414071798 593283.3499313685 532004.1301820903 570016.7287080456 591786.2740645116 575681.4992356817 400600.8857886404 616704.9825471654 597360.9328288035 0.8479681852446352 0.8739348569967402 0.9931740047375953 0.8905907650551971 0.9542249875778293 0.990667855130912 0.9637079822236468 0.6706178187642676 1.0323825155869468 1.0 19.188243363479668 VRS(ph)PDEALPGGLS(ph)GCSSGSGHSPYALER ddPTM_BT-474_Trastuzumab_2h_R1 1 VRSPDEALPGGLSGCSSGSGHSPYALER 28 1 Q5JSZ5-5 Q5JSZ5-5 PRRC2B Protein PRRC2B 2 VRS(1)PDEALPGGLS(0.279)GCS(0.232)S(0.246)GS(0.218)GHS(0.026)PYALER 61.283 0.018889 71308000.0 32058.0 45621.0 38733.0 48406.0 51820.0 50750.0 47733.0 49742.0 49072.0 54087.0 True False 31885.403289978654 47139.46740652312 44186.26972672872 54534.194636821 58418.96983879634 47241.771952649906 45423.972432232345 53454.000624758024 36978.8631311113 50635.12135378962 0.6297092302237032 0.9309638477442915 0.8726407391817527 1.0770033363954714 1.153724298014824 0.9329842743452663 0.8970843007337385 1.055670435768738 0.7303006715978521 1.0 15.627850788704436 5.119266539466402 1.4501855849397924 0.9793319385759943 0.10829124124169719 0.4381043013380952 0.11287688153277829 2.8771955640508904 2.6505198910534333 0.029896914582514787 4.735251842308439 131603.22726179083 -5.119266539466402 -0.8710406973342971 VRS(ph)PHYVHSTR ddPTM_BT-474_Trastuzumab_2h_R1 1 VRSPHYVHSTR 11 1 Q9P2Q2 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 1 VRS(0.999)PHYVHSTR 58.32 0.06465900000000001 38490000.0 23720.0 44514.0 51418.0 55366.0 47963.0 37778.0 40878.0 36336.0 27647.0 42986.0 True False 23592.294155539737 45995.62158071874 58657.20746673214 62375.329923196114 54070.803751026426 35166.495779846475 38900.57497087537 39047.57683046939 20833.76730081991 40242.59667783384 0.5862517855000815 1.1429585905934778 1.4575900242302533 1.5499827315455834 1.343621143135859 0.873862491065758 0.9666517119235084 0.9703046039267471 0.5177043486434718 1.0 15.296435778464453 2.7289730484299093 23.568478333900227 0.8811837611685014 1.2439857868953388 0.2859847513699826 0.2745075826755551 424.26030548986176 1042927.6557607085 0.09273909858710407 0.08859363303037812 535.7634079241755 -2.7289730484299093 0.3628020257268374 VRTDITYPAGFMDVISIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VRTDITYPAGFMDVISIDK 19 1 P62701 P62701 RPS4X 40S ribosomal protein S4, X isoform 0 118.16 7.7305e-05 344020000.0 159170.0 188260.0 170480.0 141300.0 180780.0 231940.0 236030.0 178800.0 359220.0 269160.0 False True 158313.04640544957 194526.12029442663 194482.10216127636 159188.56551218455 203801.26143299113 215906.53372803202 224612.32717783912 192142.96392800333 270695.04430138966 251981.97836053016 0.6282713050968225 0.7719842568110288 0.7718095691867921 0.6317458357455275 0.8087930047973385 0.8568332351892158 0.8913825053650021 0.7625266107447156 1.0742635090914527 1.0 17.942961030941312 1.9820521231899713 0.4190273932694007 1.0217323031062209 0.680641631774052 0.629244676421228 0.08254036991663576 0.7700605775192131 0.3330795496857133 0.09119307650627316 0.08608472066462257 95.9515783847939 -1.9820521231899713 -0.34109067133216886 VRTELADK ddPTM_BT-474_Trastuzumab_2h_R1 4 VRTELADK 8 1 P35579 P35579 MYH9 Myosin-9 0 ;;; 144.79 0.00052869 2818100000.0 3085180.0 2984220.0 2447390.0 2179420.0 2313060.0 2993200.0 3182020.0 2924130.0 4953930.0 3526950.0 False True 3068569.7336757197 3083547.9587009135 2791961.238904772 2455334.348539034 2607614.4804192656 2786287.129234908 3028093.5361031573 3142343.4290312743 3733100.3307610457 3301857.0314261904 0.929346638715697 0.9338829420391405 0.8455730252193335 0.7436222480773151 0.7897417894235546 0.843854565087396 0.9170880226740814 0.951689730694967 1.1306062907116805 1.0 21.654846223034507 1.629642289488066 1.9416373763967743 1.0614109943921606 0.8470389666022938 0.6232023820930989 0.06442334274726055 0.208882991875103 1.6545973840650525 0.05325278236403222 0.019739905833467252 42.622830744665514 -1.629642289488066 -0.21437202778986675 VRVDLPDKYPFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VRVDLPDKYPFK 12 2 C9JZY6;P62256-2;P62256;H7C4M9;C9JZG9;C9J8Q9 C9JZY6 UBE2H Ubiquitin-conjugating enzyme E2 H 0 ; 145.71 3.5808e-05 1055980000.0 1807730.0 1986670.0 1743420.0 1623160.0 1560950.0 2071200.0 2065790.0 2041260.0 2967000.0 2036110.0 False True 1797997.3825376835 2052795.1099826249 1988878.381921705 1828651.8895736572 1759727.7300244926 1928022.8190803626 1965859.8456158496 2193589.186508252 2235822.6057631094 1906163.7165985284 0.9432544365843542 1.0769248685762176 1.0433932639693602 0.9593362173721427 0.9231776445544012 1.0114675892167546 1.0313174196410824 1.1507873995328284 1.1729436387304883 1.0 20.862240604092197 1.9138976156653984 3.849974971368932 1.1217269141088138 0.9955907166894647 0.4103674410352196 0.06073611774920978 0.2116391862072746 5.46347670872345 0.029501423774448334 0.01676271645842466 82.01581703615005 -1.9138976156653984 -0.126136197419349 VRVDPDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VRVDPDGR 8 1 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 67.89699999999999 0.052811 177330000.0 143620.0 165400.0 177870.0 160370.0 143110.0 167910.0 164500.0 128900.0 235400.0 174040.0 False True 142846.765877682 170905.23901358855 202912.54992624454 180672.8255568933 161334.21022057385 156302.77691762464 156542.5065489751 138519.17254093755 177388.82419839434 162932.6181968596 0.8767229512330714 1.048932011925913 1.2453770900623478 1.1088806376302105 0.9901897606877309 0.9593093061867783 0.9607806483526595 0.8501623190856414 1.088725058011824 1.0 17.313915926674415 3.0897382282366235 4.378945326116967 0.954127629939894 1.0804173860146402 0.1632260525131105 0.10087367971339666 0.3187247271340951 11.168225944538172 0.03111242404507742 0.037508422858790115 1229.527447584741 -3.0897382282366235 0.12628975607474624 VRVDSTAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VRVDSTAK 8 1 P78371;P78371-2;F5GWF6;F8VQ14 P78371 CCT2 T-complex protein 1 subunit beta 0 60.717 0.082564 422880000.0 219700.0 249490.0 230950.0 192300.0 163290.0 204720.0 254880.0 203890.0 427470.0 260590.0 False True 218517.15961096447 257794.1238301099 263465.7525466141 216645.16028303694 184084.01360434288 190568.18825904428 242550.48066384613 219105.30713244178 322125.7463045352 243958.92309767654 0.8957129209964348 1.0567111895591292 1.079959483347643 0.8880395007986501 0.7545697089777655 0.7811486697813648 0.9942267230239146 0.898123767519322 1.3204097731467774 1.0 17.896278727011413 1.2613492914848674 24.99973250262143 1.1602049526154843 0.9201383944489998 0.3839709362945489 0.12241649621916845 210.9006742763047 231364.0821266166 0.08452510548139731 0.030819531832743153 18.253632031124734 -1.2613492914848674 -0.24006655816648448 VRVELSNGEK ddPTM_BT-474_Trastuzumab_2h_R1 8 VRVELSNGEK 10 1 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 ;;;;;;; 176.62 2.2269e-06 13244930000.0 7042870.0 7598250.0 6292970.0 6185740.0 6201300.0 7956910.0 8203210.0 7372800.0 11175510.0 8446200.0 False True 7004951.97045641 7851153.1580108795 7178965.476524201 6968854.04976179 6990998.797015203 7406867.540251416 7806389.392994624 7922995.7743198015 8421455.304661829 7907156.284844366 0.8859002804690721 0.9929174124279259 0.9079073712358655 0.8813350588654713 0.8841356544848923 0.9367296248397351 0.987256241280714 1.0020031840657804 1.0650422226765923 1.0 22.914727509105358 2.088190716017165 1.7906408213650429 1.025408202576654 0.9130124172291258 0.6777837034380672 0.03433724616874988 0.22158671060882187 1.356286241055544 0.020470096292605627 0.011135533073741192 122.51540951461612 -2.088190716017165 -0.11239578534752814 VRVELSTGMPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VRVELSTGMPR 11 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 ; 163.99 2.125e-05 2615900000.0 906880.0 1241610.0 1075410.0 1155470.0 1115660.0 1151860.0 1071980.0 1009870.0 1486160.0 1151000.0 False True 901997.4588438403 1282936.2382809063 1226818.380368711 1301752.3835269923 1257732.6879651016 1072234.6293867838 1020124.2320387247 1085231.627415955 1119915.7815237276 1077542.1945793226 0.8370878313456526 1.1906134578625671 1.1385339586146475 1.2080755538628372 1.1672236078477893 0.9950743783220379 0.9467139543774301 1.0071360851345914 1.039324294823506 1.0 20.03931293304084 2.7235966219950383 23.17172670456241 0.9945920430264563 1.1201014508854488 0.23026905600150516 0.09992420706217339 412.2251802547531 638328.1733956899 0.031842439055507814 0.030161625882926764 529.1717144306131 -2.7235966219950383 0.12550940785899245 VRYDS(ph)SNQVK ddPTM_BT-474_Trastuzumab_2h_R1 3 VRYDSSNQVK 10 1 O95983-2;O95983;K7EIE8;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 VRYDS(0.999)S(0.001)NQVK;VRYDS(0.936)S(0.064)NQVK;VRYDS(0.885)S(0.115)NQVK 206.7 8.8216e-08 2320040000.0 1845050.0 1167640.0 1062350.0 1158630.0 968180.0 1390610.0 1239450.0 1301050.0 2381020.0 1804810.0 True False 1835116.4558043256 1206504.191546715 1211919.645888267 1305312.43920299 1091471.984147547 1294480.4038438315 1179493.0683411963 1398140.9575980355 1794249.5250333946 1689625.4806244213 1.0861084168345618 0.714066049181998 0.7172711703189915 0.7725454274757955 0.6459845667953472 0.7661345183818137 0.6980795932985696 0.8274857201380129 1.0619214409398634 1.0 20.68827206605393 1.3458252709824983 4.121658088660602 1.0305328127156792 0.7626376988941451 0.44371628660063833 0.11386469161913466 0.1838693223187595 4.890138269384059 0.083580579640894 0.027888821124166772 22.17304155818582 -1.3458252709824983 -0.2678951138215341 VRYDSS(ph)NQVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VRYDSSNQVK 10 1 O95983-2;O95983;K7EIE8;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 VRYDS(0.247)S(0.753)NQVK 162.52 4.0844e-06 322130000.0 249940.0 140700.0 129680.0 143710.0 130750.0 205000.0 154980.0 170230.0 317720.0 243750.0 True False 248594.3508109448 145383.11444505388 147937.81680123342 161903.67126508188 147400.23748403363 190828.8325180931 147483.02531890664 182933.4270104252 239422.16322988004 228193.66631512606 1.0894007481682082 0.6371040738890876 0.6482993993222291 0.7095011613578248 0.645943596350654 0.8362582345058006 0.6463063927253733 0.8016586523387623 1.0492059972394145 1.0 17.799899223545584 1.329504636515405 4.1813315025576285 1.0256003958563946 0.7350000131856955 0.4124421852400526 0.13095250475116216 0.18913163485881676 5.300605455822209 0.09535916172412669 0.03151441445911548 21.355248847280233 -1.329504636515405 -0.2906003826706991 VS(ph)DSESEGPQK ddPTM_BT-474_Trastuzumab_2h_R1 4 VSDSESEGPQK 11 0 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 1 VS(0.927)DS(0.073)ESEGPQK;VS(0.942)DS(0.055)ES(0.003)EGPQK;VS(0.92)DS(0.08)ESEGPQK;VS(0.5)DS(0.5)ESEGPQK 311.31 1.331e-45 858300000.0 1689580.0 1479340.0 1317210.0 1131270.0 1296750.0 1753580.0 1649700.0 1570740.0 1987530.0 1555940.0 True False 1680483.4890099857 1528578.937620086 1502661.718605434 1274488.6660082745 1461883.4260605774 1632359.142083308 1569897.7085340067 1687956.5948561074 1497729.8630375294 1456638.5770927463 1.1536722392482586 1.0493879275605367 1.031595443259881 0.8749518830896142 1.0036006522484795 1.1206342930593505 1.0777537635089347 1.1588026167925887 1.0282096647658445 1.0 20.474211527908025 2.745798467613315 23.96223580593276 1.092768789530089 1.0164199785601018 0.09285136107446956 0.07646519227269655 573.686746197249 1899294.1608220097 0.024437556540693583 0.025428684745124167 556.927249391968 -2.745798467613315 -0.07634881096998725 VS(ph)LERLDLDLTADSQPPVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSLERLDLDLTADSQPPVFK 20 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 VS(1)LERLDLDLTADSQPPVFK;VS(1)LERLDLDLTADSQPPVFK 264.44 8.859399999999999e-37 762480000.0 1083730.0 1136820.0 1161000.0 1234160.0 1171850.0 1338600.0 1297160.0 1145700.0 2134690.0 1499100.0 True False 1077895.3180937225 1174658.3664777984 1324458.708407097 1390404.5294587251 1321078.151400879 1246065.7327254603 1234411.415167587 1231197.9517467183 1608624.2528805032 1403426.1545559189 0.7680456250544917 0.8369933556279571 0.9437323824324699 0.990721545943175 0.9413235937724868 0.8878740991682234 0.879569909083095 0.8772801816111955 1.1462122518227646 1.0 20.42052172347829 4.393507519628733 2.9063052811124477 0.9448504054963125 0.7750071614883289 0.40527687148043356 0.07616714202829085 0.2820763049863 4.520014634765668 0.01934703452841531 0.07720976883338071 24746.143078827125 -4.393507519628733 -0.16984324400798356 VS(ph)LSEIGFGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSLSEIGFGK 10 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 VS(0.996)LS(0.004)EIGFGK 167.18 0.0025813000000000003 0.0 80779.0 62821.0 52364.0 55528.0 58301.0 81839.0 69762.0 73811.0 107580.0 87021.0 True False 80344.09483939063 64911.9590089036 59736.39604395276 62557.839106585874 65725.28677289971 76181.66255828398 66387.34554328019 79319.15162466365 81068.35049814473 81467.2452775737 0.986213472244504 0.7967859817493124 0.7332566093332358 0.7678894615061544 0.8067694758667943 0.9351201491927119 0.8148961624648832 0.9736324255767933 0.9951036176800889 1.0 16.313932505469538 1.7578287534516597 1.1032745249350333 1.0129221945590725 0.8167711667636396 0.474024798782013 0.07301357486195367 0.4092810504239727 0.9276318471649094 0.06274041357924566 0.025113496474682872 57.25702164497361 -1.7578287534516597 -0.19615102779543292 VS(ph)PAAAQLADTLFSK ddPTM_BT-474_Trastuzumab_2h_R1 3 VSPAAAQLADTLFSK 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 VS(1)PAAAQLADTLFSK;VS(1)PAAAQLADTLFSK;VS(1)PAAAQLADTLFSK 227.46 7.6398e-13 1002381000.0 1179421.0 1001755.0 898699.0 739918.0 857106.0 1067555.0 1133767.0 1137513.0 1254765.0 1071000.0 True False 1173071.1283819922 1035097.8096013144 1025228.0075682593 833591.542934499 966253.3686347224 993757.4356041597 1078922.3587994627 1222399.996233976 945544.9787395849 1002647.863070768 1.1699731995531073 1.0323642504270276 1.0225205132620898 0.8313901356967867 0.9637016187073081 0.9911330510001988 1.0760730646700747 1.2191717962577433 0.9430479169862325 1.0 19.935383579658865 2.1933168449789755 5.480781408230784 1.0943285752487872 0.9945760379995462 0.02742612448108317 0.10395745910116226 0.3659648953541809 25.245884284875597 0.04071738832415685 0.030320415238768186 156.069070903519 -2.1933168449789755 -0.09975253724924105 VS(ph)PAHS(ph)PPENGLDK ddPTM_BT-474_Trastuzumab_2h_R1 8 VSPAHSPPENGLDK 14 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 2 VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK 242.86 2.4372e-17 16875270000.0 6603360.0 5393220.0 4160290.0 4098490.0 4178580.0 5658800.0 5664600.0 4972766.0 7170180.0 5275873.0 True False 6567808.243462266 5572730.06742967 4746022.670111074 4617358.41377235 4710697.394615932 5267620.475382371 5390581.657126581 5343859.050114099 5403185.21448956 4939162.26823787 1.3297413380600356 1.1282743438631417 0.9608962840988616 0.9348464705168861 0.9537442057550689 1.0665007929090946 1.0913959421401562 1.0819363203510646 1.0939477022724418 1.0 22.235834936245933 4.635714111755988 3.0260929056329697 1.0285695638229833 1.3473176665875053 0.7233488907457233 0.057686969919765 0.18147132507750272 2.6310496599790394 0.016484355099136514 0.12035806883783935 43222.9208652602 -4.635714111755988 0.31874810276452203 VS(ph)PATPGPALSDILR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPATPGPALSDILR 15 0 Q2M2I3 Q2M2I3 FAM83E Protein FAM83E 1 VS(1)PATPGPALSDILR 81.52600000000002 0.014411000000000004 74409000.0 67822.0 149760.0 124060.0 136910.0 119880.0 83237.0 91386.0 75991.0 56526.0 101470.0 True False 67456.85388773262 154744.67106816842 141526.56965114916 154242.7919623014 135146.00741557113 77483.02210882197 86965.31005157833 81661.83429447917 42595.92470959404 94994.09772716231 0.7101162651334307 1.6289924823815787 1.4898459276663196 1.6237092161800457 1.422677941567815 0.8156614354227054 0.915481194435428 0.8596516651910789 0.44840601393926705 1.0 16.53555025673741 2.7375828430657037 23.286341797072968 0.8133306117372324 1.4093652081435828 0.508909662781545 0.2775579578276649 26.58926407163301 633233.0398790757 0.08546198679192207 0.08493931458343516 546.4907848103901 -2.7375828430657037 0.5960345964063504 VS(ph)PATPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSPATPK 7 0 J3KNZ9;Q9HAH7;Q9HAH7-1 J3KNZ9 FBRS Probable fibrosin-1 1 VS(0.964)PAT(0.036)PK;VS(0.994)PAT(0.006)PK 90.919 0.017606999999999998 357000000.0 718140.0 600130.0 550610.0 469950.0 486810.0 658340.0 694000.0 643190.0 911160.0 675930.0 True False 714273.6140328547 620104.9642637548 628131.1020120856 529445.621814941 548802.3679510704 612830.5053656658 660428.5686625445 691188.1038526422 686616.8269184751 632791.5687072125 1.1287660097812449 0.9799513693436588 0.992635068282202 0.8366824844025558 0.867271934536468 0.9684555478791745 1.043674728492028 1.0922839968691955 1.0850600116579099 1.0 19.271370851957176 2.2033947579816444 3.7857806845717743 1.0685673698255527 0.9535577430674511 0.25371157505019604 0.07725693528559698 0.2879717400505713 8.746864142669358 0.03225300223366627 0.023823137145567403 159.73304031504208 -2.2033947579816444 -0.11500962675810156 VS(ph)PENLVDK ddPTM_BT-474_Trastuzumab_2h_R1 6 VSPENLVDK 9 0 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK 212.9 2.9007e-06 2990310000.0 3284030.0 2744240.0 2393200.0 2151400.0 2245230.0 3429260.0 3449240.0 3072490.0 4822980.0 3374920.0 True False 3266349.1473700297 2835580.3694718857 2730141.757932697 2423767.0194119914 2531146.7319791685 3192203.3278097357 3282387.083823626 3301774.8055880866 3634421.203620953 3159529.7161856233 1.0338086490015246 0.897469124897224 0.8640975091788946 0.7671290467677926 0.8011150263954229 1.0103412895459511 1.038884700785889 1.045020968998573 1.1503044851904882 1.0 21.591278404113076 2.5767525902850332 4.576610037594783 1.0563473782805748 0.8683771620119463 0.5865317447122097 0.07465442092951434 0.1690104029696003 5.86776242728197 0.026332906008638537 0.024483645593055634 377.357156130701 -2.5767525902850332 -0.18797021626862853 VS(ph)PFGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPFGLR 7 0 J3KNZ9;H3BRE6 J3KNZ9 FBRS 1 VS(1)PFGLR 146.27 0.0023399 583500000.0 232050.0 241960.0 217740.0 226180.0 213590.0 242770.0 233260.0 223420.0 276320.0 239360.0 True False 230800.66858317872 250013.49233209103 248395.89936999258 254814.36480924228 240789.42045288527 225987.8813191097 221976.322660267 240092.73490377195 208224.6384983019 224083.83987359374 1.0299746233970908 1.1157140669899457 1.108495371688174 1.1371385145532302 1.074550581553383 1.0084970047219382 0.9905949611783001 1.0714415418765086 0.9292264833366027 1.0 17.77367908502152 2.836540810120315 3.7425196285472606 1.0088948939869118 1.1003386803264683 0.5542632200140513 0.04170248881757391 0.19414069942534742 5.0015093443962115 0.013118990932306656 0.013919885330834445 686.3423701328547 -2.836540810120315 0.09144378633955652 VS(ph)PGLPSPNLENGAPAVGPVQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPGLPSPNLENGAPAVGPVQPR 23 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 VS(1)PGLPSPNLENGAPAVGPVQPR 222.16 1.7445e-32 398100000.0 61902.0 45103.0 45813.0 46881.0 44317.0 51722.0 63898.0 48511.0 83632.0 50090.0 True False 61568.72650995874 46604.22608966075 52263.072186265505 52816.129793182765 49960.50726256148 48146.57988049178 60807.0096259356 52131.137153866686 63022.01421138536 46893.21331579348 1.3129560155184032 0.9938373336843734 1.1145124953222916 1.126306475043681 1.0654101890205707 1.0267281014900331 1.2967123668075866 1.111698974493375 1.3439474447395088 1.0 15.517091521391787 2.2508208378203944 24.99576517872607 1.1917628779668006 1.100878123300512 0.09980715512079708 0.11890385520895123 458.83680515148046 935461.5522574731 0.03825488751085274 0.031791369662027856 178.16436233957722 -2.2508208378203944 -0.09088475466628854 VS(ph)PGQAAPAMAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPGQAAPAMAR 12 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 VS(1)PGQAAPAMAR 134.4 0.00023497 0.0 90475.0 71879.0 67443.0 60848.0 54484.0 78427.0 95565.0 71314.0 101060.0 86901.0 True False 89987.89265271756 74271.44906322699 76938.38817493511 68551.35056111403 61422.214448031256 73005.52608729992 90942.155856248 76635.81280515445 76155.11713462067 81354.90378031087 1.1061151629620145 0.9129314351325165 0.9457129761064923 0.8426210022474946 0.7549909297894883 0.8973709351859424 1.1178447964467682 0.9419937735050397 0.9360851478635929 1.0 16.311941688524257 0.07956688124471845 10.099371929938563 1.000000193619921 0.9375642439170707 0.029936250408781118 0.10274639250643731 0.0 144117517.04907987 0.10332383530492893 0.025059709320293923 1.2010660226489431 -0.07956688124471845 -0.06243594970285027 VS(ph)PHHPAPTPNPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPHHPAPTPNPR 13 0 A8MZI9;Q01196-7;Q01196-3;Q01196-4;Q01196;Q01196-9;Q01196-10;Q01196-2;Q01196-8;Q01196-11 A8MZI9 RUNX1 Runt-related transcription factor 1 1 VS(1)PHHPAPTPNPR 101.39 0.0012668 512250000.0 317240.0 320350.0 330980.0 298960.0 331520.0 377610.0 374240.0 296500.0 433020.0 396580.0 True False 315532.0150886771 331012.65609433583 377579.1070702673 336808.3053469405 373737.106927012 351506.7094983273 356136.581464367 318626.3355964934 326308.0231707253 371269.9248707797 0.8498722733830323 0.8915687318587538 1.0169935181301948 0.9071790704947795 1.0066452515837123 0.9467686067506519 0.9592389730687724 0.8582066961319076 0.8788970000311679 1.0 18.50210892726176 -0.24872454352554474 8.787166834412051 0.9999999991725853 0.9249900358913578 0.1458482956530921 0.055173350052771235 0.0 0.0 0.054938108572646985 0.012949036372427164 0.563995263153323 0.24872454352554474 -0.07500996328122755 VS(ph)PPAS(ph)PTLEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 2 VS(0.998)PPAS(0.933)PT(0.066)LEVELGS(0.002)AELPLQGAVGPELPPGGGHGR;VS(1)PPAS(0.858)PT(0.142)LEVELGSAELPLQGAVGPELPPGGGHGR;VS(0.999)PPAS(0.958)PT(0.042)LEVELGSAELPLQGAVGPELPPGGGHGR 119.93 6.162699999999999e-07 174000000.0 28162.100000000002 25320.0 29614.1 27617.300000000003 28797.2 33120.100000000006 36315.7 28491.300000000003 35473.5 31835.0 True False 28010.478382703448 26162.760893736777 33783.50786962838 31113.64734833444 32464.352725623026 30830.585443329266 34558.97085155383 30617.46548188991 26731.531245546892 29803.263044685267 0.939846027621411 0.8778488736119218 1.133550639034906 1.0439678132452967 1.0892885345120726 1.0344701315793405 1.1595700376746712 1.027319238030543 0.8969330373478636 1.0 14.863182674017722 4.2505195556333115 24.999794735350246 1.0543559335671366 0.9088473947238673 0.3832651659021741 0.0703241268463472 209.97778316237012 438943.76504512166 0.016747079420179823 0.04509939323593279 17804.080761712197 -4.2505195556333115 -0.1455085388432693 VS(ph)PPASPTLEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 VS(1)PPASPTLEVELGSAELPLQGAVGPELPPGGGHGR;VS(1)PPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 187.77 2.1164999999999998e-23 146286000.0 7005.1 8583.7 5753.7 14184.5 8469.2 6924.0 9861.4 9112.2 10394.3 10384.4 True False 6967.3853199397745 8869.403265543782 6563.770947943073 15980.256245630459 9547.702419118752 6445.360177342813 9384.366407793681 9792.198634814045 7832.764041484148 9721.658701467873 0.716686887895763 0.9123343595887182 0.6751698603605586 1.643778776477475 0.9821063166594343 0.662989760828533 0.9653050673725807 1.007255956572053 0.8057024302140414 1.0 13.246986770944225 VS(ph)PPQPPPPQPPR ddPTM_BT-474_Trastuzumab_2h_R1 5 VSPPQPPPPQPPR 13 0 Q15637-5 Q15637-5 SF1 Splicing factor 1 1 VS(1)PPQPPPPQPPR;VS(1)PPQPPPPQPPR;VS(1)PPQPPPPQPPR;VS(1)PPQPPPPQPPR;VS(1)PPQPPPPQPPR 127.79 6.8163e-05 2928180000.0 623320.0 578846.0 502192.0 504751.0 497293.0 636310.0 593527.0 568940.0 697880.0 596949.0 True False 619964.1143773623 598112.5391902046 572896.2684688851 568652.4248467134 560620.3158634607 592323.3874126237 564815.8315166773 611397.1918187812 525896.8251128948 558851.2037462486 1.1093545298309182 1.070253647448137 1.0251320291134485 1.0175381586990642 1.0031656228086345 1.059894625692841 1.0106730158769364 1.0940250065138835 0.9410319269021078 1.0 19.092104685603868 4.473193395390379 2.478475976731245 1.0260014061888874 1.110146621108083 0.3643895599312983 0.03815313529475131 0.3788232687855727 4.065886987362556 0.009391930780386493 0.05248359770361496 29729.89637071098 -4.473193395390379 0.08414521491919569 VS(ph)PPQPPPPQPPRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSPPQPPPPQPPRK 14 1 Q15637-5 Q15637-5 SF1 Splicing factor 1 1 VS(1)PPQPPPPQPPRK;VS(1)PPQPPPPQPPRK 113.69 0.00031922 565430000.0 467110.0 444160.0 400890.0 417760.0 416000.0 525940.0 547770.0 503980.0 665540.0 542040.0 True False 464595.13166079944 458943.59709961043 457331.8274016545 470648.3731661022 468975.134174822 489583.00572959025 521272.27241539216 541589.5467585858 501526.5847790969 507446.54313620826 0.9155548263062919 0.9044176244913767 0.9012413890440042 0.9274836522825051 0.9241862823153378 0.9647972034724787 1.0272456862031925 1.0672839416963236 0.9883338285831571 1.0 18.952896324292556 2.4712801612339512 2.2044313663776207 1.0316914894440474 0.9129361155987091 0.8395685114767457 0.021670870353352096 0.10743180806938259 1.0582085429134351 0.008868866799722038 0.007312258159686016 295.9921281460409 -2.4712801612339512 -0.1187553738453383 VS(ph)PQPMISR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPQPMISR 9 0 D6RIF6;Q9P270 D6RIF6;Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 VS(1)PQPMISR 135.1 0.00024164 320220000.0 139050.0 114230.0 109220.0 109240.0 108200.0 140420.0 131040.0 140230.0 175990.0 128780.0 True False 138301.3702499072 118032.07649650678 124597.22664274152 123069.77279937052 121978.62864835521 130713.09591312525 124701.09457858762 150694.67467351162 132619.6226451801 120561.15014589505 1.1471470708644047 0.9790224823972917 1.0334774219718563 1.0208078858773304 1.0117573405756732 1.0842057806759888 1.034338959338748 1.2499439039122553 1.10001955426514 1.0 16.87940555977205 1.8065149947112287 24.999999999411788 1.1441929141045515 1.0408284264233791 0.14129434615884562 0.0723004135206703 184.8970541032171 68036.39747749892 0.028369786347450906 0.017997003926932285 64.04938952631792 -1.8065149947112287 -0.10336448768117235 VS(ph)PSDTTPLVSR ddPTM_BT-474_Trastuzumab_2h_R1 6 VSPSDTTPLVSR 12 0 Q9HCK8-2;Q9HCK8;H0YJG4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 VS(0.994)PS(0.006)DTTPLVSR;VS(0.505)PS(0.495)DTTPLVSR;VS(0.999)PS(0.001)DTTPLVSR;VS(0.993)PS(0.007)DTTPLVSR;VS(0.818)PS(0.18)DT(0.001)TPLVSR;VS(0.907)PS(0.092)DTTPLVSR 245.18 1.988e-16 6690590000.0 1744860.0 1904580.0 1654520.0 1737620.0 1690940.0 1937860.0 1917810.0 1721360.0 2252050.0 1848580.0 True False 1735465.8676321695 1967972.7939570767 1887462.034654356 1957602.513837808 1906271.1860133968 1803900.299431764 1825038.2035543453 1849816.6240889677 1697062.453423931 1730602.0417510387 1.002810481996317 1.1371607951911717 1.0906389736745052 1.1311684989444992 1.101507533230814 1.0423541957725657 1.05456838691104 1.0688861907370146 0.9806196990885484 1.0 20.722842579182327 1.5673662223831886 0.8671613444638879 0.9918406205902398 1.0932966391462962 0.4259098702655568 0.03956161498865238 0.5084361269714599 0.7595898277750478 0.035042661875444664 0.014141080987587807 36.92888731798418 -1.5673662223831886 0.10145601855605635 VS(ph)PSPSQESLSSSK ddPTM_BT-474_Trastuzumab_2h_R1 5 VSPSPSQESLSSSK 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 VS(0.676)PS(0.317)PS(0.006)QES(0.001)LSSSK;VS(0.997)PS(0.003)PSQESLSSSK;VS(0.611)PS(0.388)PSQESLSSSK;VS(0.986)PS(0.014)PSQESLSSSK;VS(0.979)PS(0.021)PSQESLSSSK 328.0 2.5491e-68 3507330000.0 2488700.0 1984000.0 1781740.0 1569510.0 1643710.0 2290350.0 2184550.0 2050460.0 2674880.0 2148890.0 True False 2475301.115720561 2050036.2406466731 2032593.5048382934 1768209.805074513 1853026.7254675417 2132023.4954039725 2078874.9707085923 2203475.737224908 2015691.6655556527 2011746.0004427137 1.23042427581605 1.019033337307758 1.0103628909370228 0.8789428708621232 0.921103720380086 1.0597876148056413 1.033368511855426 1.095305141275291 1.001961313760321 1.0 20.940016733794653 4.740521302750536 4.464827656960077 1.0054495957611849 1.2460867993907612 0.5730407180509534 0.05915353226403544 0.17046068673623976 8.539390774051475 0.016360850278987298 0.12978834542332385 55020.09079713428 -4.740521302750536 0.2406372036295763 VS(ph)SPTKPK ddPTM_BT-474_Trastuzumab_2h_R1 4 VSSPTKPK 8 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 VS(0.571)S(0.429)PTKPK;VS(0.618)S(0.382)PTKPK;VS(0.997)S(0.003)PTKPK;VS(0.5)S(0.5)PTKPK 142.83 0.00037017 10035900000.0 13980800.0 10501000.0 8568800.0 8439500.0 8477100.0 10971600.0 13085200.0 12395400.0 20456100.0 12220600.0 True False 13905528.926212898 10850519.437011443 9775212.55865524 9507939.834678575 9556608.437291794 10213159.116368352 12452218.885681732 13320407.69056584 15414968.252696574 11440670.845417963 1.2154469885637973 0.9484163633076745 0.8544265184038795 0.8310648879900732 0.8353188870143271 0.8927063154219461 1.0884168466981896 1.1643030265048415 1.3473832488477135 1.0 23.447668313966126 2.0470534824839466 2.90578990854869 1.1839674179978092 0.9182203698280111 0.41147436580955987 0.1305918517563697 0.2463639911358827 4.090832802416819 0.06259218108397165 0.03830786088243086 111.44317651515472 -2.0470534824839466 -0.2657470481697981 VSADGSQEPTHDILQMLSDLQESVASSRPQEVSAYLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSADGSQEPTHDILQMLSDLQESVASSRPQEVSAYLTR 38 1 F5GWV0;F5H4P3;Q6NXE6-2;Q6NXE6;F5H052;F5H2X2;F5H2K4 F5GWV0 ARMC6 Armadillo repeat-containing protein 6 0 44.099 0.051167 111290000.0 16410.0 20651.0 18744.0 20855.0 18560.0 18870.0 18884.0 15176.0 21431.0 15766.0 False True 16321.650383322398 21338.35605120689 21382.992274231357 23495.240861688682 20923.505986261283 17565.56131520204 17970.508776114544 16308.510182166543 16149.61721068729 14759.800382048314 1.105817826857177 1.4457076314636192 1.448731806714577 1.5918400150089358 1.417600878377028 1.190094775032747 1.217530610913361 1.104927557286063 1.094162305225303 1.0 13.849385589445292 2.429255585209407 1.6336668780848482 1.0944678592783965 1.4165860632266702 0.5692150815706557 0.1236030056349479 0.2840967961923123 1.5391011490667572 0.06003173002072079 0.04448366589258404 268.6925253950751 -2.429255585209407 0.32211820394827373 VSAGEPGSHPS(ph)PAPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSAGEPGSHPSPAPR 15 0 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68;C9JME2 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 1 VSAGEPGS(0.002)HPS(0.998)PAPR;VSAGEPGS(0.002)HPS(0.998)PAPR;VSAGEPGSHPS(1)PAPR;VSAGEPGS(0.001)HPS(0.999)PAPR 153.36 1.7176e-06 3218050000.0 2322040.0 3145090.0 3515720.0 3009970.0 3622240.0 5267280.0 3397340.0 2528630.0 3843250.0 3607320.0 True False 2309538.3946428956 3249772.4194029463 4010702.81681395 3391031.8933808263 4083510.7933014627 4903165.331443426 3232997.6851008767 2717329.210722968 2896132.534411549 3377097.7492179694 0.6838826016148667 0.9622974105962708 1.1876182197399243 1.0041260707262867 1.2091775531955142 1.4518872995544314 0.9573302063434611 0.8046344561250016 0.8575803099220931 1.0 21.687352507707487 2.007755643141313 24.99934152555377 0.869518754819696 1.0945584997154068 0.17638592099355743 0.19109816255607434 282.43137582693305 910377.6015153019 0.07533933661214176 0.05554032781198733 101.80184363051775 -2.007755643141313 0.22503974489571077 VSALEEDMDDVES(ph)S(ph)EEEEEEDEKLER ddPTM_BT-474_Trastuzumab_2h_R1 4 VSALEEDMDDVESSEEEEEEDEKLER 26 1 Q8NAV1 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 2 VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER 122.57 8.8278e-05 3947370000.0 2566380.0 1999860.0 1829940.0 1609520.0 1877580.0 2471580.0 2425430.0 2517340.0 3361050.0 2562950.0 True False 2552562.895231626 2066424.1311591016 2087579.645876384 1813285.066972198 2116678.6837114487 2300725.4920735075 2308102.6848576292 2705196.6935935123 2532764.263262584 2399380.3367481115 1.0638425497356219 0.8612324188501659 0.8700494931560905 0.7557305689308722 0.8821772235493897 0.9588831986477345 0.9619578228209575 1.1274563903694712 1.055590989253187 1.0 21.194230433270157 2.186444013359039 1.8876571583763757 1.0704752574420364 0.8804538924701824 0.45021826812232413 0.07944430751810194 0.28025660726907575 1.978134278946906 0.04183747387617734 0.025501767460619936 153.61867445807505 -2.186444013359039 -0.19002136497185407 VSALNSVHCEHVEDEGESR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSALNSVHCEHVEDEGESR 19 0 Q13085;Q13085-4;Q13085-3;Q13085-2;Q59FY4;A0A087WWN5 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 ;; 282.22 5.6285999999999995e-40 1791700000.0 610417.0 896405.0 816615.0 862394.0 871749.0 960100.0 902887.0 498457.0 930918.0 833683.0 False True 607130.5826957037 926241.2985367356 931587.293855177 971572.9919767501 982761.0678888633 893730.5468322978 859210.906446713 535654.39245336 701505.73256211 780476.6371880741 0.7778971897007616 1.186763644679778 1.1936132991905166 1.244845707972969 1.2591806353481456 1.1451086480336663 1.100879725935558 0.686317010568353 0.8988170806617826 1.0 19.57399592160813 1.873027339355588 6.480752816276093 0.8359338731662792 1.1477916689486598 0.4076364811055625 0.1469091386531112 0.20320925551172409 9.742015290139738 0.06375941229288784 0.0388998192348376 74.64957497287092 -1.873027339355588 0.3118577957823806 VSAPEVSVGHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSAPEVSVGHK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 105.2 0.0024972 161630000.0 602280.0 627320.0 725410.0 660210.0 591870.0 770070.0 806220.0 698000.0 1053600.0 802120.0 False True 599037.3913995986 648199.966977052 827541.4226232485 743792.5183071444 667241.1362116623 716836.8734497959 767220.0585405146 750088.3043721819 793954.3975166873 750928.0148705173 0.7977294488112695 0.8631985411928217 1.1020249694185955 0.9904977622061373 0.8885553914601453 0.9546013189738303 1.021695879428345 0.9988817696480797 1.0572976128125797 1.0 19.518315089810315 4.41550599403228 6.899367925182227 0.996586218524151 0.8133922641214121 0.6242696288316995 0.054055052803407805 0.11931527494895043 10.545144037595081 0.013729646618119007 0.03851641212833607 26031.9075976475 -4.41550599403228 -0.1831939544027389 VSAS(ph)SENFHVGENDENQDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSASSENFHVGENDENQDR 19 0 Q9UN76 Q9UN76 SLC6A14 Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) 1 VS(0.153)AS(0.695)S(0.153)ENFHVGENDENQDR;VS(0.008)AS(0.911)S(0.082)ENFHVGENDENQDR;VS(0.115)AS(0.738)S(0.147)ENFHVGENDENQDR 195.3 7.976e-16 1630230000.0 944073.0 965883.0 996312.0 884096.0 1086958.0 1246610.0 987060.0 971971.0 1108345.0 1193320.0 True False 938990.2158643703 998031.8317663978 1136584.0695008533 996022.462951594 1225375.6583951835 1160434.784904294 939312.1368646284 1044504.4115887317 835208.225812103 1117161.295947347 0.8405144532581675 0.8933641322760577 1.0173858274753744 0.8915654942261243 1.0968654775638922 1.0387352203427807 0.8408026130802325 0.9349629416788892 0.7476165069824144 1.0 20.091406066751354 -0.9211317765857779 4.287020559450115 1.0000015899948334 0.9289434843933311 0.04827338750349397 0.09961992123316175 12552938.466453101 2928126.6178602534 196.5072352201474 0.02324391645143263 0.11991353981238626 0.9211317765857779 -0.07105810560150227 VSASS(ph)PTTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSASSPTTK 9 0 Q9BVI0;Q5JWZ0;Q5JXL1 Q9BVI0 PHF20 PHD finger protein 20 1 VSAS(0.141)S(0.85)PT(0.008)T(0.001)K 108.9 0.002795 0.0 556290.0 465740.0 413730.0 389730.0 425680.0 514830.0 516250.0 495110.0 706270.0 529910.0 True False 553294.9964496293 481241.8743542251 471979.58779437345 439069.77804008283 479887.8247969664 479241.01387946325 491277.0152334852 532057.6223176386 532219.2220331342 496090.69012122374 1.1153101791013802 0.9700683442308297 0.9513977931717312 0.8850594997716902 0.9673389046662052 0.9660350887906339 0.990296784471883 1.0725007199543013 1.072826466271887 1.0 18.92024435760578 1.87259559088709 4.39270460867779 1.0544505233561838 0.9705188161165866 0.24109033896151877 0.05688043030765078 0.29190489004875136 8.549025208451072 0.027626780508070322 0.01573152411954907 74.57539990072311 -1.87259559088709 -0.0839317072395972 VSCHDS(ph)DDDIMR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSCHDSDDDIMR 12 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR 218.28 2.2335000000000003e-11 1657510000.0 1303000.0 1864780.0 1437730.0 1560930.0 1490630.0 1592880.0 1557650.0 1207110.0 1738740.0 1672230.0 True False 1295984.7927769108 1926848.0750166832 1640149.8870268185 1758543.5779542406 1680452.8948437844 1482767.954836197 1482300.5186991536 1297190.6777803788 1310250.8249223286 1565506.8497318684 0.8278371908745593 1.2308142090510197 1.0476797896526193 1.1233062175712833 1.0734241725812974 0.9471488132358907 0.9468502286994362 0.8286074749545521 0.8369499150685552 1.0 20.57819839019461 2.479812338194949 1.8949982643850445 0.8784897298571764 1.073693790762157 0.32858328880769705 0.10540545349217628 0.3255984690881966 2.3698151807009706 0.04202598844286211 0.03386736140551625 301.864705919108 -2.479812338194949 0.19520406090498066 VSDGDWICPDKK ddPTM_BT-474_Trastuzumab_2h_R1 3 VSDGDWICPDKK 12 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 ;; 169.23 7.1198e-05 2137720000.0 1951450.0 1607260.0 1466450.0 1444170.0 1442950.0 2111520.0 2128300.0 2039490.0 3117660.0 2103020.0 False True 1940943.6100264753 1660756.6774908118 1672913.4133881018 1627001.7739259137 1626701.1294652864 1965555.5923834364 2025345.9981044563 2191687.100120374 2349354.467503678 1968803.4631139967 0.9858493477843359 0.843536040344039 0.8497107226447609 0.8263911580857006 0.8262384539350528 0.998350332681037 1.0287192378771155 1.1132076620049465 1.1932904992902518 1.0 20.908887669927417 2.370667578936664 1.851130604546651 1.10603646840534 0.8623522506578344 0.7149467550776877 0.06482107370953408 0.1712008402472261 1.1966259915381958 0.029219440863490067 0.021223097482334315 234.78350347280985 -2.370667578936664 -0.2436842177475057 VSDGIYQHVDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSDGIYQHVDVR 12 0 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 0 ; 117.07 0.00077313 844870000.0 625090.0 789330.0 759250.0 798180.0 699410.0 855660.0 849250.0 681470.0 932820.0 849160.0 False True 621724.5848940272 815602.3718899391 866145.8004806963 899229.5061607612 788475.7177721438 796510.2382069825 808168.5330499517 732324.7518345428 702939.010147605 794965.8817975482 0.7820770666134829 1.0259589632271116 1.08953833153468 1.1311548416737784 0.9918359212967366 1.0019426700501188 1.016607821234479 0.9212027441714059 0.8842379607010865 1.0 19.600533418836672 1.737155461529039 6.191317849627156 0.9275441945181082 1.0138671673510598 0.1069185217363795 0.0901118611519575 0.28033087007733887 28.91583763867929 0.04576234065067889 0.023856342571914334 54.59532574006985 -1.737155461529039 0.08632297283295154 VSDILHSIFSSYK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSDILHSIFSSYK 13 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 ; 180.28 1.3032e-05 173509000.0 440190.0 600690.0 715610.0 481740.0 345680.0 493270.0 611370.0 432790.0 1038960.0 558980.0 False True 437820.0659497064 620683.6035252274 816361.6678063746 542728.2346060849 389700.29899411654 459171.4059326825 581795.6974397977 465086.9874630899 782922.2293507372 523305.4178331456 0.8366434801355411 1.1860828922721578 1.5600099673851822 1.0371156424356611 0.7446899758992584 0.8774443953475138 1.1117708275386164 0.8887486573115922 1.4961095426693436 1.0 18.997293669832302 3.502410550405611 24.776522186807536 0.9960444691122381 1.210951462425898 0.0864047745637313 0.24795110713831864 1366.9804807234948 1339259.2345572396 0.06573218314128523 0.10134261572671582 3179.8786762031305 -3.502410550405611 0.2149069933136598 VSDQNS(ph)PVLPK ddPTM_BT-474_Trastuzumab_2h_R1 8 VSDQNSPVLPK 11 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VS(0.013)DQNS(0.987)PVLPK 250.05 1.6055e-16 12165690000.0 9665880.0 8371940.0 7659930.0 7286220.0 7427320.0 9683130.0 9813260.0 9041770.0 12078880.0 9735030.0 True False 9613839.97606023 8650594.961955406 8738381.56269489 8208654.704927027 8373145.176825339 9013758.014736213 9338555.123506343 9716512.790577738 9102201.872699667 9113732.050821505 1.0548741089215636 0.949182498861775 0.9588148426974237 0.9006908102139238 0.9187394505493048 0.9890303955034226 1.0246686068266153 1.0661398356233107 0.9987348565815253 1.0 23.11961052441093 2.3978102934966694 3.435083707070996 1.0319239591137157 0.9530381261135796 0.34011972700689197 0.04215107572219197 0.23646722581269022 5.600904148893224 0.01594261682652501 0.013138952582381184 249.92534109284028 -2.3978102934966694 -0.07888583300013607 VSDS(ph)PSHIATK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSDSPSHIATK 11 0 Q9P2D3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 VS(0.047)DS(0.952)PS(0.001)HIATK;VS(0.048)DS(0.946)PS(0.006)HIATK 164.22 1.4835e-05 1087870000.0 2461100.0 2662400.0 2395220.0 2528200.0 2520400.0 2767100.0 2723700.0 2452900.0 3363100.0 3014300.0 True False 2447849.7110539163 2751016.3745452156 2732446.1563745397 2848269.8607778116 2841358.000418801 2575816.8900527577 2591944.2254555775 2635947.8535738178 2534309.0682311803 2821924.7933279327 0.8674397407193603 0.9748723215620875 0.9682916294704405 1.0093358503076229 1.0068865077966695 0.9127872210283334 0.9185022335052607 0.934095713608728 0.8980781749475458 1.0 21.428248108733968 2.7157830587062057 24.839175383549325 0.9279657027844543 0.9684987808208542 0.11224866012314694 0.04453605837589634 1353.3257692047468 1475815.2201675167 0.014246678384182917 0.013438819359543107 519.7363099884582 -2.7157830587062057 0.04053307803639983 VSEEIEDIIK ddPTM_BT-474_Trastuzumab_2h_R1 4 VSEEIEDIIK 10 0 O75223;M0QZK8;O75223-3 O75223 GGCT Gamma-glutamylcyclotransferase 0 ;;; 179.0 5.0114e-06 505102000.0 900150.0 841340.0 750310.0 694170.0 709700.0 946880.0 945820.0 870060.0 1131550.0 902150.0 False True 895303.6924160671 869343.4932992308 855947.1261885696 782051.8508251469 800076.0882785355 881424.414315767 900067.0732167254 934988.2952751601 852694.6644931734 844574.0146305262 1.0600654020923597 1.0293277773642378 1.013466092208649 0.925971954236917 0.9473131713962842 1.043631936392646 1.0657053823879197 1.1070531168120148 1.0096150837250182 1.0 19.687864334244285 2.5346094488744964 8.32177049960477 1.0598512555903483 0.9942798408874634 0.20410194916552427 0.04600548824959166 0.4550195673933042 61.75418745830386 0.01601338892290834 0.015026075308809509 342.4596818477682 -2.5346094488744964 -0.06557141470288497 VSEEIEDIIKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSEEIEDIIKK 11 1 O75223;M0QZK8;O75223-3 O75223 GGCT Gamma-glutamylcyclotransferase 0 100.56 0.0063156 244220000.0 227180.0 199500.0 182250.0 149300.0 162370.0 243320.0 213760.0 201120.0 280650.0 207530.0 False True 225956.88812207108 206140.23689970345 207909.2158546024 168201.364691926 183046.85705761015 226499.86111367054 203419.6121575009 216128.5956666666 211487.56801732918 194285.257724628 1.1630161277719442 1.061018418555865 1.070123478690722 0.8657443527204094 0.9421551547521598 1.1658108482667389 1.0470151700641104 1.112429209492562 1.088541511044976 1.0 17.567816908481653 2.739836358040162 24.99996739025013 1.088499219742337 1.0168366057519915 0.11838424928495628 0.08406482191965822 252.09654615642793 4940234.424294729 0.027622037832286506 0.0278756922358099 549.3338461170491 -2.739836358040162 -0.07166261399034557 VSEEIFFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSEEIFFGR 9 0 Q9Y4W6 Q9Y4W6 AFG3L2 AFG3-like protein 2 0 114.89 0.003638900000000001 44688000.0 45534.0 64937.0 69183.0 61829.0 71588.0 95711.0 58777.0 50394.0 67817.0 72274.0 False True 45288.85000330296 67098.38878975446 78923.36505058418 69656.54506052982 80704.30746468059 89094.72384945958 55933.731960055346 54154.65617554695 51104.40905124253 67661.41144311552 0.669345333438371 0.9916788219259304 1.1664457386753873 1.0294870233248337 1.1927671289052333 1.3167730608806991 0.8266710783454481 0.8003772759171008 0.7552962310608488 1.0 16.046045652169738 2.091906867362673 24.99991014319908 0.8256349575859462 1.0676422893459614 0.27473513689160856 0.17009994490757988 21.563577626454055 5856.289777258683 0.06551725415534247 0.04838769790430806 123.56824180974594 -2.091906867362673 0.2420073317600152 VSEHVGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSEHVGSR 8 0 Q92922;F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 Q92922;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 0 ;; 141.48 0.00063284 1284130000.0 585960.0 829150.0 837500.0 877010.0 865840.0 873840.0 858110.0 828890.0 862030.0 912680.0 False True 582805.2564662768 856747.7565182415 955412.7203195017 988039.3760781392 976099.5917642489 813433.4975981002 816599.9410014633 890745.9808181355 649594.2571102022 854431.9810153397 0.682096725562305 1.0027103099536956 1.118184643772538 1.1563698433947087 1.1423958997933679 0.952016679702789 0.9557225842963886 1.042500749749141 0.7602644464902584 1.0 19.70460612191727 -0.6683168745687162 7.511606941675148 0.9999898603883387 0.9957860810784112 0.0 0.14895821344410393 0.0 0.0 0.14309778333574108 0.033728470989821964 0.214626392273929 0.6683168745687162 -0.004203779309927547 VSELHLEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSELHLEVK 9 0 Q9UNF0-2;Q9UNF0;A0A0U1RR22;B0QYG7;B0QYG8 Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 0 ; 150.35 8.5449e-05 438930000.0 1458800.0 1512140.0 1544030.0 1439560.0 1339120.0 1834140.0 1898860.0 1655690.0 2416430.0 1835160.0 False True 1450945.9828879163 1562470.6657920687 1761416.0030506523 1621808.1483985859 1509648.994413912 1707350.2189011497 1807004.8874503723 1779245.9952234651 1820933.2050030818 1718038.5176404763 0.844536352351762 0.9094503119394193 1.0252482612961145 0.943988235273065 0.8787049760020731 0.9937787781649938 1.051783687557879 1.035626370977439 1.0598907919153753 1.0 20.71233095072836 2.5053827590315265 4.782448682333623 1.0386194979453482 0.9270662522743948 0.5836986196593421 0.046449761775912264 0.15248156717400313 8.838749772641998 0.016489920663026188 0.014821272920045944 320.17156514201173 -2.5053827590315265 -0.11155324567095348 VSELKEELK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSELKEELK 9 1 Q00839;A0A1X7SBS1;Q00839-2;A0A1W2PPS1 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ; 118.28 0.00092591 4484300000.0 6901700.0 5166300.0 4413500.0 4063000.0 3361000.0 5618200.0 5928500.0 5589400.0 10821400.0 5679800.0 False True 6864542.014050964 5338257.172405697 5034882.437170303 4577375.383411227 3789003.427792247 5229827.057820254 5641715.8059306815 6006509.4103981005 8154610.969330943 5317310.301278576 1.2909801431750838 1.0039393734689668 0.9468852017080212 0.8608441343569082 0.712578956861171 0.9835474631906875 1.061009323562347 1.1296142354065368 1.5335969705153605 1.0 22.342265229285125 1.6823091475972967 2.442402650888241 1.2740216563119804 0.957962886143698 0.2785691557762615 0.18367775657814453 0.29847763812338884 3.923284652246563 0.12250014000505896 0.05092472684262799 48.11817503349382 -1.6823091475972967 -0.31605877016828243 VSELYDVTWEEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSELYDVTWEEMR 13 0 Q15006 Q15006 EMC2 ER membrane protein complex subunit 2 0 ; 208.42 1.0712e-07 136719000.0 43254.0 60495.0 59949.0 53963.0 59046.0 54208.0 63549.0 53871.0 64096.0 56779.0 False True 43021.125269971184 62508.539505000226 68389.29811395092 60794.71026704896 66565.15810693876 50460.72855190631 60474.89208924503 57891.12757139522 48300.39964239708 53155.31560905248 0.8093475652817793 1.1759602739402204 1.286593773931126 1.143718357617944 1.252276603839834 0.9493072889085193 1.1377016841368546 1.0890938546423798 0.908665466265643 1.0 15.697926350127293 2.732447514264416 24.958093630272028 1.037977341226714 1.1449978956527904 0.1449099140811635 0.13555944723937116 1049.733214752584 4285758.875663445 0.043594134646914084 0.04211183928453909 540.0668421913853 -2.732447514264416 0.1070205544260765 VSFELFADKVPK ddPTM_BT-474_Trastuzumab_2h_R1 3 VSFELFADKVPK 12 1 P62937;F8WE65;C9J5S7 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase 0 ;; 161.1 5.3998e-05 50283380000.0 27295600.0 24557790.0 22123217.0 20137479.0 19255816.0 29325510.0 27597300.0 24647220.0 40967590.0 27550790.0 False True 27148643.52242626 25375181.194652434 25237973.655150644 22686881.776657786 21707930.029436752 27298306.51852519 26262313.167076167 26486520.71244719 30871676.382081117 25792474.994781967 1.0525800074602634 0.9838211028521321 0.9785014295935732 0.8795930511223732 0.8416381147535646 1.0583825912033593 1.0182160949032324 1.0269088452273631 1.1969257075300728 1.0 24.620446882138037 2.6753227930155905 24.979491264155154 1.0553276798881983 0.9472396658387059 0.36820433381784634 0.07378701281826242 259.01551281706855 102312.82049441978 0.024827374912628174 0.02340747625230226 473.50306332704224 -2.6753227930155905 -0.10808801404949242 VSFPSYLAS(ph)PAGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSFPSYLASPAGSR 14 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 VSFPSYLAS(1)PAGSR 237.27 2.8685e-17 194390000.0 136490.0 157560.0 150850.0 159750.0 168220.0 172050.0 168360.0 167800.0 186380.0 160140.0 True False 135755.15300546476 162804.28935296874 172088.36878829505 179974.33362046359 189641.8198819436 160156.5884621364 160215.78360234285 180322.08807113493 140449.1463640472 149919.72809724844 0.9055189382240905 1.0859430671283132 1.147870070019514 1.2004713182491875 1.2649557352380512 1.0682822767544482 1.0686771223225249 1.2027909225806852 0.9368289827269566 1.0 17.19383071599701 1.2280686337000961 24.984043414610692 0.9684144024195194 1.1252579046302602 0.2824678194649346 0.09485200072154512 293.72587903759506 699411.1137147917 0.0889369625090183 0.02317934968131442 16.907081014760692 -1.2280686337000961 0.15684350221074084 VSGAGFS(ph)PSSK ddPTM_BT-474_Trastuzumab_2h_R1 7 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 VSGAGFS(0.877)PS(0.122)S(0.001)K;VSGAGFS(0.971)PS(0.029)SK;VSGAGFS(1)PSSK;VSGAGFS(0.996)PS(0.004)SK;VSGAGFS(0.998)PS(0.002)SK;VSGAGFS(0.904)PS(0.095)SK;VSGAGFS(0.998)PS(0.002)SK 273.34 4.5493000000000005e-27 12295200000.0 10648170.0 9689910.0 8829840.0 8426110.0 8443540.0 9944820.0 9532760.0 7818240.0 11442410.0 8804500.0 True False 10590841.43584291 10012432.796675721 10073004.721654885 9492854.662051467 9518774.7702175 9257358.000988208 9071623.980120393 8401676.769018305 8622581.37593861 8242589.272088302 1.2848925363424868 1.2147193638024159 1.2220680163895679 1.151683572806049 1.1548282288492424 1.1231128587634707 1.1005794029843792 1.019300670175174 1.0461010601531566 1.0 22.974666176540023 3.2181431352397487 0.35148721566086605 0.9862160263516924 1.3286666086288015 0.9494594331264851 0.019830521803450823 0.4682382408395889 0.09699287779631885 0.022211507024497226 0.06218701646320452 1652.506343295907 -3.2181431352397487 0.3424505822771091 VSGAGFSPS(ph)SK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 VSGAGFS(0.225)PS(0.63)S(0.145)K 128.46 0.00027838 1348100000.0 458840.0 433970.0 403570.0 366890.0 365650.0 403490.0 415480.0 364090.0 514690.0 393840.0 True False 456369.6564219161 448414.4291095952 460389.14810667635 413338.23638192064 412213.36012265296 375597.68601329497 395381.64511226804 391260.24461155856 387851.5459926577 368704.79401661205 1.2377643682098538 1.2161882253404923 1.248666021103955 1.121054684098568 1.1180037981933064 1.018694880317646 1.0723528728906466 1.0611748232216647 1.0519297613884104 1.0 18.492106649368754 3.4226170847411566 1.446377956585608 1.0491757443059861 1.237753159757057 0.8933416665775153 0.028172485620198293 0.11564695109316686 0.49412218789074225 0.008756419109209634 0.015428038245617948 2646.1659985156716 -3.4226170847411566 0.18857741545107087 VSGLYQRLES(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 VSGLYQRLESK 11 1 Q8TCC6;Q9UI17-2;Q9UI17 Q8TCC6 DMGDH Dimethylglycine dehydrogenase, mitochondrial 1 VS(0.002)GLY(0.001)QRLES(0.997)K 68.132 0.069913 0.0 819570.0 708010.0 658780.0 582530.0 569060.0 811640.0 801180.0 741890.0 1154200.0 840930.0 True False 815157.5261827878 731575.6848489164 751530.4977815902 656278.2382718531 641526.4179171257 755533.2371950488 762423.8625951832 797253.5990410872 869762.8754876237 787261.1274436063 1.0354347468288785 0.929266871367685 0.9546140049134135 0.8336220542260473 0.8148839000857185 0.9596983908610042 0.968451046314106 1.012692702902693 1.104795912268547 1.0 19.58648271853361 1.8827766816007134 1.7504670146226293 1.049837038695164 0.9139207033002681 0.41249858054343536 0.06371054920849026 0.35308475893046903 2.0289755967486593 0.04491485085418269 0.020307149449825476 76.34431128380099 -1.8827766816007134 -0.135916335394896 VSGNNSPS(ph)LSNGGFK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSGNNSPSLSNGGFK 15 0 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UJW8;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 1 VSGNNS(0.311)PS(0.49)LS(0.199)NGGFK 108.34 0.0021361 0.0 111060.0 91104.0 88565.0 92177.0 93436.0 117370.0 111010.0 101680.0 127400.0 104570.0 True False 110462.06529992603 94136.34156646895 101034.18217922012 103846.59874887936 105334.52076143902 109256.48815926148 105640.02220061839 109267.87792057804 96003.97707253792 97896.25307311883 1.1283584594133729 0.9615928966776532 1.0320536180660314 1.0607821595716866 1.0759811275183795 1.116043614842518 1.0791017928103512 1.11615996006472 0.9806705982999414 1.0 16.578966022051777 5.063760404284899 20.975222041670346 1.0569728162125325 2.681262198861518 0.15959676234312026 0.05161804151743465 816.2426048206161 350821.5663381588 0.012213574857189597 18763.768935214895 115813.82471405614 -5.063760404284899 1.6242893826489857 VSGRT(ph)SPPLLDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VS(0.009)GRT(0.758)S(0.233)PPLLDR;VS(0.054)GRT(0.628)S(0.318)PPLLDR 140.22 9.6174e-05 1847030000.0 595020.0 1167010.0 1069990.0 1435250.0 1267900.0 989160.0 1299090.0 964060.0 1774330.0 1348830.0 True False 591816.4784329368 1205853.2223775585 1220635.2914801962 1616952.5028405022 1429359.5495679255 920781.6974321802 1236248.053694272 1036003.0525974864 1337070.146303896 1262746.5146085378 0.4686740146072824 0.954944803590595 0.9666510874184464 1.2805044275586628 1.1319449573068425 0.729189656656966 0.9790152175375589 0.8204362796587534 1.0588587106244354 1.0 20.26813362901931 4.740758443499725 4.525964628366622 0.9842502734135651 0.4339650468868582 0.5425092661666651 0.14409358996221955 0.16538452939891063 8.722026967395587 0.03702306275660596 0.29109907869760643 55050.1419927013 -4.740758443499725 -0.5502852265267069 VSGRTS(ph)PPLLDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VS(0.008)GRT(0.106)S(0.886)PPLLDR;VS(0.048)GRT(0.443)S(0.509)PPLLDR;VS(0.019)GRT(0.3)S(0.681)PPLLDR 90.56 0.0053244 3408010000.0 1334370.0 2493840.0 2146400.0 2856660.0 2579830.0 2055580.0 2601840.0 2073050.0 3701940.0 2628440.0 True False 1327185.9001824427 2576845.956841886 2448594.463156752 3218312.8631000486 2908356.0586495935 1913482.5929148402 2475979.0592059894 2227751.5177346026 2789646.4904545615 2460690.708879303 0.5393550255598341 1.0472043266321287 0.9950842071785363 1.3078900373325655 1.1819267038132455 0.7776201153644038 1.0062130320854705 0.9053358513103053 1.1336843270827313 1.0 21.23063190212727 4.739634300005628 24.371385056760236 1.032354599573518 0.5393548008867808 0.5379621902119913 0.13889655482637114 53.305780898767594 1209747.8544599065 0.03483892193880637 0.21390567418489873 54907.83247949885 -4.739634300005628 -0.49299979868673716 VSGS(ph)PEQAVEENLSSYSLDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSGSPEQAVEENLSSYSLDRR 21 1 Q9Y6A5;A0A494BZT8;E7EMT0;C9JA91 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 1 VS(0.063)GS(0.937)PEQAVEENLSSYSLDRR 100.27 0.00043768 65802000.0 12480.0 17305.0 12922.0 17236.0 17838.0 19565.0 18249.0 19360.0 21471.0 21278.0 True False 12412.809066658348 17880.98646390659 14741.30527996252 19418.075832753115 20109.563565890552 18212.517601056057 17366.22615205011 20804.741508088035 16179.759746659829 19920.019822987688 0.6231323651763627 0.897638989458833 0.7400246290393279 0.9748020335976106 1.0095152386687956 0.914282102271747 0.8717976340570454 1.0444136950144687 0.8122361267928258 1.0 14.281931462623707 5.465153696739571 0.7429041632432986 0.9488585668797119 1.8602208872869566e-17 0.5274497458716736 0.08644641773868465 5.504021616371973 1.0589138403508531 0.029923680375231007 5.590095557090251 291845.9673618553 -5.465153696739571 -0.9488585668797119 VSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER ddPTM_BT-474_Trastuzumab_2h_R1 2 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 Q9BYG3;H7BZL0;C9J808 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 VSGTLDT(0.999)PEKT(0.001)VDSQGPTPVCTPTFLER;VSGT(0.001)LDT(0.707)PEKT(0.292)VDSQGPTPVCTPTFLER 239.34 5.0608e-45 1098950000.0 909330.0 625980.0 570000.0 486920.0 419500.0 862270.0 786690.0 675630.0 1112250.0 906890.0 True False 904434.2683160608 646815.3658870991 650251.0454711835 548564.0220749672 472920.8384286962 802663.3044652494 748634.7992523594 726048.9413796236 838150.890886424 849011.5037724074 1.0652791679469522 0.7618452317938078 0.765891913810269 0.6461208353921426 0.557025242093152 0.9454092210750745 0.8817722680151625 0.8551697334530509 0.9872079320035988 1.0 19.695424576298713 1.7573023476041634 1.0341679767011136 0.9861744836731433 0.7686023636362412 0.251260286233143 0.13403430288733711 0.7353166084905699 1.4640099025288624 0.11953855623873416 0.048583677172681576 57.18766278107906 -1.7573023476041634 -0.21757212003690207 VSHEQFR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSHEQFR 7 0 O96013;O96013-4;O96013-2;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 0 ; 100.39 0.0098288 138440000.0 523070.0 567850.0 501410.0 490240.0 472910.0 454660.0 539670.0 499460.0 692140.0 538170.0 False True 520253.84923853975 586750.5439774267 572004.1696661515 552304.3337345601 533132.2853428241 423230.42435451795 513564.1003603966 536732.2414064909 521571.37120083463 503823.5298494817 1.0326112585372236 1.1645953577291628 1.1353264303416692 1.0962257636112431 1.0581726611738407 0.8400370353503713 1.0193332981367997 1.0653179329810991 1.0352263050450525 1.0 18.94255897563651 2.9956840616091878 16.450214972959387 0.9985128361461734 1.108790343511243 0.4173874203180079 0.06414091386455671 2.406774884487138 9178.235235728374 0.020125770346597027 0.023228310738452496 990.111401515368 -2.9956840616091878 0.11027750736506958 VSHLLGINVTDFTR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSHLLGINVTDFTR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 ; 216.54 6.0898e-12 8954300000.0 2865190.0 3072830.0 3114100.0 2896200.0 2783230.0 3132600.0 3003850.0 2581230.0 3799300.0 3091900.0 False True 2849764.135392538 3175107.288985037 3552538.211757564 3262858.623045924 3137657.843003337 2916050.735347211 2858542.2996786553 2773854.489820359 2863013.4230117234 2894572.2948912326 0.9845199376855162 1.0969175980122983 1.227310237864021 1.1272334184931907 1.0839797812413037 1.0074202466782007 0.9875525668244085 0.95829511486587 0.9890972245069819 1.0 21.464918759119005 2.7367987982407858 2.345934977565955 0.9789042584429003 1.11606369142076 0.520004883198816 0.05595848544321531 0.23973809951313083 2.6048018237201824 0.02085028596789733 0.020702918680462548 545.5050786723505 -2.7367987982407858 0.1371594329778597 VSHPQEPMLTAS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSHPQEPMLTASPR 14 0 O75052-3;O75052;E9PSG0 O75052-3 NOS1AP Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein 1 VSHPQEPMLT(0.158)AS(0.842)PR 162.76 2.8264e-06 204180000.0 197530.0 218460.0 223640.0 223710.0 239290.0 318680.0 235840.0 178470.0 306800.0 259570.0 True False 196466.52042764612 225731.30903814128 255126.56808627272 252031.663062497 269762.1631170508 296650.40169202926 224431.5182037097 191788.33765229737 231193.2509093768 243004.02037094266 0.8084908230231844 0.9289200594029893 1.049886202281037 1.037150178329452 1.1101139919630225 1.2207633488499328 0.9235712144231925 0.7892393605650426 0.9513968145731216 1.0 17.89062065707956 2.0163945635216938 24.878855941323263 0.8816969245825054 1.0306824620502117 0.16587629343828914 0.11400768876363541 313.3299713960522 475478.1886551509 0.04522877727209858 0.03339535386754267 103.84714553890983 -2.0163945635216938 0.14898553746770637 VSHS(ph)PPPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSHSPPPK 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 VS(0.027)HS(0.973)PPPK;VS(0.029)HS(0.971)PPPK 69.27600000000001 0.035001 2415000000.0 1585850.0 1436830.0 1271400.0 1262000.0 1253030.0 1567210.0 1672380.0 1274780.0 1992480.0 1532840.0 True False 1577311.9598044993 1484654.0179679224 1450402.0687930943 1421769.0706042252 1412595.943209319 1458872.4615155156 1591480.5902879902 1369910.5568016784 1501460.0018641301 1435012.8388696501 1.099162263277684 1.0345928466656606 1.0107241060892291 0.990770975766421 0.984378609686873 1.0166267659769925 1.1090357850328285 0.9546329619467012 1.0463042289202233 1.0 20.452632213884172 4.712627441566382 2.4926711387971077 1.0127444048965433 1.1153609314893442 0.29937532503652897 0.03906236169787813 0.5900970664803633 4.802617741586448 0.00956133505995079 0.12550486769093472 51597.35527447268 -4.712627441566382 0.10261652659280096 VSHVADTK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSHVADTK 8 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 0 85.676 0.016574000000000002 235100000.0 519110.0 551400.0 541330.0 473430.0 394190.0 439090.0 599370.0 463640.0 753440.0 535570.0 False True 516315.1694385431 569753.0156716609 617544.5586752909 533366.1894581284 444387.75995282026 408736.7418066806 570376.18328425 498239.17111621646 567764.8075787515 501389.4640754541 1.0297686856875055 1.1363482013373913 1.2316664049054622 1.0637762212288173 0.8863125210902804 0.8152080789339639 1.1375910826846056 0.9937168744360301 1.1323828047039068 1.0 18.935572154920997 3.4775366852136846 24.99970722236117 0.9938170637462411 1.1354284004118558 0.2719705213750587 0.1018796558853231 19.57309214070096 1177920.0667853192 0.02918082092689108 0.03994309206098988 3002.871065148081 -3.4775366852136846 0.14161133666561465 VSHVSTGGGASLELLEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSHVSTGGGASLELLEGK 18 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 200.58 1.4973e-15 632670000.0 447720.0 664280.0 620890.0 567260.0 715840.0 916010.0 858420.0 762840.0 863570.0 899530.0 False True 445309.5252663681 686390.1582342604 708305.9151273738 639075.0578375224 806997.9808839043 852688.3847556026 816894.9451171496 819766.9944230306 650754.7447451458 842121.225273621 0.5287950379372978 0.8150728631869353 0.8410973312033928 0.7588872464648719 0.9582919378640473 1.0125482640323524 0.9700443601237162 0.9734548540284956 0.7727566117736829 1.0 19.683668401923843 5.280373732094732 0.6811670236648381 0.9453289724391577 1.318852717261555e-14 0.671236482112487 0.08255980075092019 3.578241761449792 0.7429395854047407 0.03305083080487767 3.0871449131877244 190710.11678323068 -5.280373732094732 -0.9453289724391445 VSIGNITLS(ph)PAISR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSIGNITLSPAISR 14 0 Q0JRZ9;Q0JRZ9-3 Q0JRZ9 FCHO2 F-BAR domain only protein 2 1 VSIGNITLS(1)PAISR;VSIGNITLS(1)PAISR 354.64 4.863199999999999e-82 372060000.0 525980.0 536580.0 486950.0 482610.0 497280.0 576220.0 526220.0 459790.0 569260.0 440590.0 True False 523148.1821218713 554439.7409305401 555508.3273547251 543708.3765168821 560605.6603905172 536387.2676759786 500764.72824438603 494101.8645663118 428973.5006931946 412471.1689919231 1.26832666486834 1.3441902916162294 1.3467809852319712 1.3181730443019857 1.3591390199723143 1.3004236610934665 1.2140599534950571 1.1979064276756448 1.040008448933784 1.0 18.65393375547762 1.4838143455443231 1.0321581969003788 0.9926278537543782 1.3292788966845113 0.9319683221279756 0.0316287234629657 0.10580042060398448 0.22163166306131496 0.027982778425241737 0.010144811246916463 30.46592338135295 -1.4838143455443231 0.33665104293013304 VSILESLDKWER ddPTM_BT-474_Trastuzumab_2h_R1 2 VSILESLDKWER 12 1 P10644;P10644-2;K7EPB2;K7EM13 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed 0 ; 213.99 2.0053e-09 1242000000.0 1548810.0 1671720.0 1571750.0 1380830.0 1352370.0 1680850.0 1949950.0 1536260.0 2199330.0 1649440.0 False True 1540471.3790489682 1727362.1896239202 1793038.7381040927 1555642.9364203096 1524586.3033750108 1564656.7957953024 1855623.4689676221 1650903.5221702126 1657334.5910121256 1544171.3270433682 0.9976039265011581 1.1186337677512173 1.1611656729420252 1.007428974477143 0.987316806545128 1.0132663185704645 1.2016953277591242 1.0691193996790531 1.0732841375739255 1.0 20.558401398978955 VSIS(ph)FENYR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSISFENYR 9 0 B4E1Q4;O14730-2;O14730 B4E1Q4 RIOK3 Serine/threonine-protein kinase RIO3 1 VSIS(1)FENYR;VSIS(1)FENYR;VSIS(1)FENYR;VSIS(1)FENYR 142.19 0.00011005 297375000.0 220058.0 256443.0 225194.0 269220.0 261363.0 239876.0 237456.0 252628.0 328114.0 261629.0 True False 218873.2321787421 264978.55023193307 256899.357778663 303303.2243962514 294646.0288301301 223293.93672736638 225969.34610999 271480.3841789912 247254.70120234456 244931.61322814395 0.8936095642944648 1.081847078617476 1.0488615756569226 1.2383179957816903 1.2029726377365555 0.9116582942659062 0.9225813815201904 1.1083925859995791 1.009484639175739 1.0 17.902019468444966 2.7328379849672952 24.988198389015707 1.000622463157092 1.0981029553902393 0.2032074412882967 0.1004304694740598 894.4900909550543 3905832.8236991367 0.034419611006115854 0.03326375254293218 540.5526303306995 -2.7328379849672952 0.09748049223314736 VSISEGDDKIEYR ddPTM_BT-474_Trastuzumab_2h_R1 8 VSISEGDDKIEYR 13 1 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R299;M0R2U2;M0R1H0;M0R2B0 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 ;;;;;;; 216.88 2.4383000000000004e-11 13993630000.0 7679780.0 7341890.0 6549200.0 6233820.0 6268030.0 8364710.0 7726510.0 7659760.0 10924970.0 7993080.0 False True 7638432.9177837735 7586260.370383768 7471270.433333124 7023020.972832044 7066226.466975499 7786477.286109356 7352749.193165463 8231370.186673157 8232657.530597838 7482954.791179918 1.0207776381045515 1.0138054528039666 0.998438536891795 0.9385358015405901 0.9443096563010628 1.0405618506859347 0.9825997080500972 1.1000160252705775 1.1001880621143918 1.0 22.83517662831863 1.7536087691790367 12.061268542390247 1.074512559677672 0.9904861123789258 0.42692571948365077 0.0397374733115409 0.1355766029560381 96.84740115649836 0.0188175669248458 0.010327714537533214 56.703356746252496 -1.7536087691790367 -0.08402644729874609 VSIVNHLEFLRDEELEER ddPTM_BT-474_Trastuzumab_2h_R1 1 VSIVNHLEFLRDEELEER 18 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 74.51899999999998 0.011065 33557000.0 16388.0 21771.0 20817.0 18945.0 20003.0 19535.0 22634.0 15255.0 25207.0 19206.0 False True 16299.768828877957 22495.634574152577 23747.85265539235 21343.43505752539 22550.2634829302 18184.591430443652 21539.10694972339 16393.405563320397 18995.072606495007 17980.256636916136 0.9065370510569973 1.2511297824284497 1.3207738429402884 1.1870484102937746 1.2541680543441833 1.0113643980535842 1.1979310075864216 0.9117448040014235 1.0564405720158245 1.0 14.13412599251326 2.1444739914328292 1.3274133367247059 0.9892508762888703 1.1890373038047921 0.2461550134936994 0.12406909816139086 0.5475596525645625 1.8360959286051366 0.07950251944779706 0.04212183560756779 139.4678132134671 -2.1444739914328292 0.1997864275159218 VSKEEEEKER ddPTM_BT-474_Trastuzumab_2h_R1 1 VSKEEEEKER 10 2 P23921;E9PL69 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit 0 75.695 0.021498 117720000.0 237430.0 165500.0 152700.0 140700.0 140620.0 210100.0 234780.0 185860.0 320820.0 211820.0 False True 236151.70326095313 171008.5674531375 174198.83270780672 158512.60557370394 158527.12347996017 195576.28152220167 223422.79445330283 199729.8169779568 241758.20976775215 198301.46625177417 1.1908721994073521 0.8623666313995675 0.8784545873535526 0.799351656696516 0.7994248679870356 0.9862573647029294 1.1266825136312069 1.007202925692789 1.2191448421304307 1.0 17.597335819408226 2.469154278356274 5.688634087607481 1.0796968108708052 0.8954763353019165 0.3413830663256726 0.11851327464855972 0.18439550571732377 21.100931692912088 0.04054887636724623 0.03507599585292572 294.5467793130426 -2.469154278356274 -0.18422047556888865 VSKPSQLQAHTPASQQT(ph)PPLPPYASPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSKPSQLQAHTPASQQTPPLPPYASPR 27 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 VSKPSQLQAHTPASQQT(0.983)PPLPPY(0.004)AS(0.014)PR;VSKPSQLQAHTPASQQT(0.999)PPLPPY(0.001)ASPR 149.0 1.677e-07 1787610000.0 1247800.0 1227270.0 1277060.0 1094960.0 1236480.0 1575360.0 1370190.0 1165470.0 1577810.0 1444590.0 True False 1241081.983443612 1268118.9400496176 1456858.9475954904 1233581.8237312222 1393938.398808857 1466459.0711985524 1303908.675065896 1252443.2895367458 1188979.8670708095 1352395.0294242783 0.9176919143010657 0.9376838220038878 1.077243642499694 0.9121460792830365 1.030718368879442 1.0843422515556211 0.9641477872193724 0.9260927926287318 0.8791661025084989 1.0 20.367085188214595 1.9991175184683039 24.994634405371873 0.9314358513658564 0.9952400042538091 0.14653645852624864 0.06294065431347654 56.029255055977984 1586956.4628465804 0.023933256140377793 0.01746754996084384 99.79700742719261 -1.9991175184683039 0.06380415288795271 VSLDVNHFAPDELTVK ddPTM_BT-474_Trastuzumab_2h_R1 6 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 ;;;;; 227.0 5.4338e-15 41942020000.0 24080800.0 22828000.0 20410100.0 18775200.0 18586800.0 26298700.0 26562500.0 23898800.0 33878700.0 27719100.0 False True 23951151.648428418 23587816.1801826 23283664.672230534 21152138.394935366 20953718.807405256 24480732.769480877 25277570.396396 25682249.81164742 25529748.33632175 25950043.306484558 0.9229715482765054 0.9089702048508077 0.8972495497305112 0.8151099458724116 0.807463731752972 0.9433792645487986 0.9740858655938922 0.9896804220449905 0.9838036890652209 1.0 24.629233610424688 2.509382169169035 4.777855861346193 0.983832839521713 0.8706915237445343 0.7093695947129954 0.03532250189666295 0.12433465887448536 7.020795692983881 0.013463466235542182 0.012143842764212816 323.1336372760877 -2.509382169169035 -0.11314131577717867 VSLEPHQGPGT(ph)PESK ddPTM_BT-474_Trastuzumab_2h_R1 6 VSLEPHQGPGTPESK 15 0 Q14980;Q14980-2;A0A087WY61;Q14980-5;H0YFY6 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 1 VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(0.998)PES(0.002)K;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK 148.91 1.269e-05 4572560000.0 2136630.0 2138996.0 1913856.0 1757329.0 1733249.0 2340920.0 2303215.0 1989573.0 2776960.0 2760830.0 True False 2125126.6214819117 2210191.1888096114 2183310.2892654333 1979806.6712170008 1953967.9863783058 2179097.7103329506 2191799.6913142675 2138045.0401069834 2092615.4173575754 2584631.465734522 0.8222164937847245 0.855128175181254 0.8447278918524511 0.7659918628493378 0.7559948148441391 0.8430980351443167 0.8480124614947314 0.8272146603691433 0.8096378323564511 1.0 21.30152715529539 -1.1379088301467504 4.122604637740406 1.000041978491281 0.8200295224796887 0.7400348600314741 0.032159034207508985 4890042.09783775 1349735.1057710224 2197.8691302901275 0.008121683979954195 0.0727932600728584 1.1379088301467504 -0.18001245601159233 VSLLFEDDVDSGGSLFGS(ph)PPTSVPPATK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSLLFEDDVDSGGSLFGSPPTSVPPATK 28 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 VSLLFEDDVDSGGSLFGS(0.953)PPT(0.037)S(0.01)VPPATK 105.9 0.00059101 164790000.0 69912.0 72699.0 64224.0 68429.0 63082.0 78356.0 71607.0 71370.0 93092.0 86325.0 True False 69535.60155995344 75118.74226752641 73266.18095498485 77092.10438381656 71115.11878369261 72939.43415018388 68143.09584469574 76695.99180951671 70150.72396889082 80815.66459344912 0.8604223192342585 0.9295072019195583 0.9065839070130443 0.953925266489309 0.8799670106215666 0.9025407947470658 0.8431916780923111 0.9490238333786299 0.8680337447175704 1.0 16.302347338874632 -1.2174198758473864 3.817235328402066 1.0000962764449361 0.9024849597492554 0.4190030812010399 0.035408870697645645 4874193.608022623 1554514.4024402306 4020.32103241076 0.007746140431703114 0.06061500204531601 1.2174198758473864 -0.0976113166956808 VSLQVHPDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSLQVHPDR 9 0 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 ;;; 138.22 0.00014275 5030500000.0 2426670.0 3145930.0 2930250.0 2930160.0 2669990.0 2924740.0 3095700.0 2489710.0 3413340.0 3005700.0 False True 2413605.0783483842 3250640.378295157 3342803.7298104153 3301117.9555639243 3009997.4002294056 2722559.6078974036 2945949.1642775815 2675504.8026912147 2572168.0934126885 2813873.6526907682 0.8577517601191414 1.1552190252702819 1.187972219937401 1.1731578468021222 1.0696988464109232 0.9675486336403039 1.0469372572789528 0.9508262036331169 0.9141021989217787 1.0 21.424126120098784 2.8464881949568044 3.9712835556382475 0.9768579787736899 1.1062518666215588 0.268026730899214 0.09258529117321561 0.30404446220998893 8.44849276873577 0.029436677448915954 0.03134343711614591 702.2442549911893 -2.8464881949568044 0.12939388784786898 VSMEDAHNCIPELDSETAMFSVYDGHGGEEVALYCAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSMEDAHNCIPELDSETAMFSVYDGHGGEEVALYCAK 37 0 O15355 O15355 PPM1G Protein phosphatase 1G 0 142.72 2.7189e-13 92196000.0 32866.0 27272.0 28573.0 32520.0 22373.0 41379.0 42797.0 23777.0 34817.0 30931.0 False True 32689.05310775588 28179.73203372788 32595.83003903184 36637.02866564929 25222.068934839634 38518.567125688656 40726.745609583486 25551.360477159567 26236.8168738976 28956.957098638595 1.1288842607461937 0.9731592977030291 1.1256648938629095 1.2652237091366128 0.8710193149412596 1.33020078713656 1.4064580567237241 0.8823910741077439 0.9060626358123491 1.0 14.821622386343726 1.614389367170798 24.99999999865531 0.9206624405755637 1.1484407777362948 0.3199885119820174 0.1515962041070196 0.6672488120043971 2548.0618611464993 0.0736005877001728 0.03959960051115725 41.151850310712426 -1.614389367170798 0.22777833716073115 VSMPDVELNLKS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSMPDVELNLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK 188.41 5.0645e-07 2719000000.0 2404300.0 1083600.0 1002820.0 1062440.0 598530.0 2622500.0 998380.0 1335740.0 4738500.0 1325580.0 True False 2391355.5159428404 1119666.9709499688 1144008.339332303 1196944.795065573 674749.2477347499 2441212.747700972 950084.5452180279 1435419.7015502865 3570760.167646945 1240980.3495138646 1.9269890267638952 0.9022439165846433 0.9218585449644316 0.9645155102854434 0.543722749517406 1.9671647086573776 0.7655919334985516 1.1566820555318145 2.8773704346291513 1.0 20.243048840406182 1.4273859954888994 24.999992344986065 1.9648036590059599 1.1105277449835682 0.213140437679172 0.6086547907123642 98.47945651804694 49505.063611873746 0.33607119088456405 0.13759827196427646 26.753831993107624 -1.4273859954888994 -0.8542759140223917 VSNEEVTEELLHVNDDLNNVFLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSNEEVTEELLHVNDDLNNVFLR 23 0 Q6ZVM7-2;Q6ZVM7;Q6ZVM7-4;Q6ZVM7-3;Q6ZVM7-5;F5H3S6;B7Z2U2 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 0 ;;; 304.31 3.2959999999999997e-62 851790000.0 526350.0 592190.0 538780.0 544140.0 533480.0 591320.0 605400.0 495400.0 621950.0 577650.0 False True 523516.19008298236 611900.6861635859 614635.5408402891 613028.0682080694 601415.5158163079 550443.4402175557 576114.4891474126 532369.2635902278 468678.75620302104 540783.8824489544 0.9680691438365825 1.1315068847698957 1.1365640892566833 1.13359160304844 1.1121180481429689 1.0178621406482342 1.0653322109720849 0.9844399599695525 0.8666655412890574 1.0 19.04469262853939 1.807295829693579 1.4555839467658334 0.9329012046926696 1.0952525357667344 0.5035801005730958 0.06006235400463065 0.30693566692621327 1.2321882455272386 0.04521171662039709 0.018525907737197735 64.16465000566753 -1.807295829693579 0.16235133107406485 VSNGS(ph)PSLER ddPTM_BT-474_Trastuzumab_2h_R1 6 VSNGSPSLER 10 0 P46527;E7ES52 P46527 CDKN1B Cyclin-dependent kinase inhibitor 1B 1 VSNGS(0.979)PS(0.021)LER;VS(0.001)NGS(0.859)PS(0.14)LER;VSNGS(0.989)PS(0.011)LER;VS(0.002)NGS(0.994)PS(0.003)LER;VSNGS(0.978)PS(0.022)LER;VS(0.009)NGS(0.889)PS(0.101)LER 203.29 2.1823e-07 4098980000.0 1093234.0 1307540.0 1195400.0 1278820.0 1287590.0 1248840.0 1233453.0 1242638.0 1312363.0 1305850.0 True False 1087348.1496137166 1351060.6784753785 1363701.9293969374 1440718.4808796311 1451556.9543561512 1162510.6302531476 1173786.1661419636 1335369.9575479075 988948.7234132432 1222509.5350055667 0.8894394018847186 1.1051534894320694 1.1154939003324238 1.1784926330845107 1.187358390909844 0.9509215240990772 0.9601447944016394 1.0923186439947292 0.8089497014914816 1.0 20.22141428689563 2.72043744582985 24.756324997482633 0.978223204390112 1.1014974191905502 0.2952095941556693 0.10084442323843006 1027.424069613854 1403463.5847600573 0.033071300450888026 0.03123970341872673 525.3363421575663 -2.72043744582985 0.12327421480043821 VSNLQVS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSNLQVSPK 9 0 O00443;A0A0C4DGF9;O00443-2 O00443 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 VSNLQVS(1)PK;VSNLQVS(1)PK 125.36 0.00052847 1084430000.0 2036570.0 1753480.0 1546690.0 1430350.0 1447620.0 1810890.0 1628560.0 1416190.0 2245700.0 1573180.0 True False 2025605.3334042002 1811843.521798956 1764450.50792952 1611432.1633429087 1631965.826284027 1685707.4366765365 1549780.3310966468 1521873.289067109 1692277.325838293 1472778.3055328415 1.375363369893848 1.2302214902218043 1.198042163780484 1.0941444189455949 1.1080865464633474 1.1445764989501652 1.0522835142767442 1.0333349448113343 1.1490373802227065 1.0 20.49010884994952 7.999999999954659 0.4127694152835859 1.0561789591245385 6.7460023803981395 0.8355641755187099 0.042293012522110554 27.40812905776943 0.35639440463627753 0.027735112255830148 128.04768988217475 99999999.98955993 -7.999999999954659 5.689823421273601 VSNQDSKS(ph)PLGFYCDQNPVESSMCQSNSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSNQDSKSPLGFYCDQNPVESSMCQSNSR 29 1 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 VSNQDS(0.213)KS(0.787)PLGFYCDQNPVESSMCQSNSR;VSNQDS(0.346)KS(0.654)PLGFYCDQNPVESSMCQSNSR 241.83 1.1127e-45 978450000.0 387537.0 355069.0 342240.0 376330.0 326587.0 450820.0 444810.0 405540.0 584830.0 449470.0 True False 385450.54385140864 366887.2570212572 390424.41719659255 423973.33941401547 368175.918617194 419655.87451613 423292.84096078697 435803.4540903942 440706.4828205053 420784.4397893726 0.9160285110455827 0.8719126049549405 0.9278489893590718 1.0075784637526974 0.8749751269355105 0.9973179491289946 1.0059612498329784 1.0356928937499197 1.047345008862744 1.0 18.682721830555224 2.5559127553258523 4.685836205628349 1.023494859655264 0.9224884629149689 0.6367847361656793 0.03713485353441805 0.14819579837695815 5.886214894557702 0.012736913127585195 0.011786090656550641 359.67707298691903 -2.5559127553258523 -0.1010063967402951 VSNS(ph)PEPQK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSNSPEPQK 9 0 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 VSNS(1)PEPQK 134.75 0.00025178 168130000.0 277860.0 251220.0 210910.0 211320.0 241520.0 257020.0 266390.0 258500.0 351050.0 280340.0 True False 276364.03263314837 259581.70583430308 240604.29473741652 238073.0903328724 272276.14039880515 239252.8123600016 253503.6979913766 277790.5826364027 264538.4313289989 262448.46118885063 1.053022111012815 0.9890768825941612 0.9167677861303379 0.9071232090843223 1.0374461300532556 0.9116182707881908 0.9659180200297016 1.0584576544211943 1.007963354521802 1.0 18.00167461307248 1.758498230526158 24.999999999996653 1.0269914812477376 0.9655749417838385 0.19511266057263166 0.04914847903717992 12.845318104353838 16121.568710841391 0.022817025894301263 0.01265353663101079 57.34535300827339 -1.758498230526158 -0.061416539463899134 VSPAHS(ph)PPENGLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSPAHSPPENGLDK 14 0 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 VSPAHS(1)PPENGLDK;VSPAHS(1)PPENGLDK 195.77 1.6603e-08 1100690000.0 592890.0 658930.0 700780.0 659150.0 655060.0 816520.0 849490.0 778700.0 933700.0 825380.0 True False 589697.9461162713 680862.0867184029 799443.7327110465 742598.3224158282 738478.0081551897 760075.8942813331 808396.9233330613 836810.5481584799 703602.1459390012 772703.5417566297 0.7631619557167789 0.8811427021164695 1.034606015773691 0.9610391078674732 0.9557067727117786 0.9836578366826305 1.04619285359465 1.0829645561816788 0.9105719178398789 1.0 19.559555485128598 4.499878762799316 2.740122757860259 1.0035127901711252 0.7623867612813404 0.7025188851069586 0.048066582051322256 0.16836624645420803 2.2497424196443485 0.012998130484037898 0.07097289868689381 31613.950051969736 -4.499878762799316 -0.24112602888978474 VSPAS(ph)PAGS(ph)PSADFAVHGESLGDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-3;Q96C92;Q96C92-2;Q96C92-4 A0A0A0MRP9;Q96C92-4 SDCCAG3 Serologically defined colon cancer antigen 3 2 VS(0.019)PAS(0.98)PAGS(0.968)PS(0.033)ADFAVHGESLGDR;VS(0.006)PAS(0.994)PAGS(0.99)PS(0.01)ADFAVHGESLGDR 167.97 5.8408e-12 501130000.0 242898.0 274874.0 273732.0 255600.0 277770.0 306550.0 278376.0 288590.0 341510.0 290720.0 True False 241590.26415650468 284023.01492515835 312271.0862788039 287958.93379274185 313142.36302822194 285358.92004108056 264909.88938041026 310126.05123032694 257349.43649954812 272166.00070208573 0.8876577659711089 1.0435653762501047 1.1473552371466758 1.0580268404206121 1.1505565067658439 1.0484737965247757 0.9733393910225471 1.1394738888410698 0.9455605617001519 1.0 18.054127329368 4.722262200870817 4.397941830334211 1.0666595180891938 0.8773405406473858 0.34688632027356703 0.0686786016564465 0.18526815527146198 8.633825478455366 0.015570096188778667 0.10587820966715669 52754.82671900661 -4.722262200870817 -0.18931897744180803 VSPATPGPALS(ph)DILR ddPTM_BT-474_Trastuzumab_2h_R1 5 VSPATPGPALSDILR 15 0 Q2M2I3 Q2M2I3 FAM83E Protein FAM83E 1 VSPATPGPALS(1)DILR;VSPAT(0.004)PGPALS(0.996)DILR;VSPATPGPALS(1)DILR;VSPATPGPALS(1)DILR;VSPATPGPALS(1)DILR 236.69 1.0766e-17 1825063000.0 1379556.0 1192291.0 1111171.0 1253206.0 1030774.0 1039411.0 991366.0 1064480.0 1320114.0 1117041.0 True False 1372128.6237790794 1231975.6851798696 1267614.218328527 1411861.751105894 1162036.9590238412 967558.964080311 943409.8391941087 1143916.9029199155 994789.5933213208 1045750.4870330848 1.3120994355660949 1.1780780410393374 1.2121574257401448 1.3500942802441425 1.1111990608014677 0.9252292741697762 0.9021366481699393 1.093871738147921 0.9512685919407544 1.0 19.996107239206722 3.005739732318358 4.970707299633553 0.9855781147468846 1.2527456446055487 0.8059034526632496 0.06653199529293034 0.0832646915829482 5.912983913174833 0.020648977950048986 0.023779149907341042 1013.303942354567 -3.005739732318358 0.2671675298586641 VSPGLPS(ph)PNLENGAPAVGPVQPR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPGLPSPNLENGAPAVGPVQPR 23 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 VSPGLPS(1)PNLENGAPAVGPVQPR 237.52 3.9184e-37 301430000.0 63172.0 83938.0 69591.0 71727.0 81826.0 78701.0 70350.0 74397.0 82135.0 60038.0 True False 62831.88897106901 86731.82558840743 79388.80790418453 80807.63084566503 92246.0560793004 73260.58511222662 66946.90173690203 79948.8819203112 61893.929802613085 56206.323438882166 1.1178793617303822 1.5430972937185297 1.4124533156933956 1.4376964352335537 1.6412042353136165 1.3034224733074558 1.1910919918058507 1.4224179243327721 1.1011915744660925 1.0 15.77844482815796 1.107292376588885 0.8329194987759073 0.9931105378084041 1.4203675657850567 0.4337542910294938 0.14932175234871153 0.5481614244142587 0.8554898756344529 0.13791830997549503 0.05064435863114857 12.802429017567015 -1.107292376588885 0.42725702797665266 VSPNELILGWYATGHDITEHSVLIHEYYSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSPNELILGWYATGHDITEHSVLIHEYYSR 30 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 0 ; 231.45 5.2254e-36 1659880000.0 240211.0 301810.0 277043.0 324110.0 319860.0 352390.0 298300.0 64866.0 324390.0 210617.0 False True 238917.73066595112 311855.5634020024 316048.24629907584 365142.2927682532 360592.27504124667 328030.1087368331 283870.08938333864 69706.63030287396 244448.4311033009 197175.2427417144 1.211702480209021 1.5816162265894156 1.6028799655800432 1.8518668352626992 1.828790826004444 1.6636475460893905 1.4396842394417049 0.3535262811578465 1.2397521499365467 1.0 17.589118893211566 1.9256457690501032 6.874541813149758 0.8106548391702944 1.6335067613602936 0.6216376446560702 0.26416776798422964 0.14842717531853963 11.628258814335029 0.1124921125676175 0.06970899555563813 84.26471748300366 -1.9256457690501032 0.8228519221899993 VSPS(ph)PSQESLSSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSPSPSQESLSSSK 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 VS(0.013)PS(0.987)PSQESLSSSK 332.29 1.911399999999999e-68 187250000.0 222740.0 183420.0 160740.0 145270.0 164370.0 211720.0 209200.0 189730.0 251320.0 208900.0 True False 221540.7925887402 189525.02382026848 183370.794822874 163661.1671051312 185301.5452026814 197084.29473527143 199080.1967783926 203888.61602941874 189385.55351546488 195567.8231517118 1.13280798967057 0.9691012599411324 0.9376327448336123 0.8368511980530201 0.9475052808607153 1.0077541977975755 1.0179598748407404 1.042546839984265 0.9683881042565421 1.0 17.577309497088354 2.697455897382587 6.529331171690999 1.0137908509485112 0.9564141389475475 0.07488689174487295 0.07009022601455718 0.4834086989148761 58.601141050982164 0.02384308824584007 0.022694625554289118 498.2598550983704 -2.697455897382587 -0.057376712000963725 VSQGSAESLS(ph)PSFR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSQGSAESLSPSFR 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 VSQGSAES(0.011)LS(0.989)PSFR;VSQGSAES(0.003)LS(0.996)PS(0.001)FR;VSQGSAESLS(0.997)PS(0.003)FR;VSQGSAES(0.003)LS(0.997)PSFR 322.02 3.0309999999999997e-56 2388160000.0 1901030.0 2114400.0 2011300.0 1980850.0 1973060.0 2023390.0 1831080.0 1681070.0 2008670.0 1885740.0 True False 1890795.0657042898 2184776.5258182106 2294473.5574670043 2231625.4068988757 2224317.495757152 1883517.8118477317 1742503.6649951187 1806519.9797004932 1513660.1932990176 1765390.4587367598 1.0710350542266238 1.2375599488520777 1.29969749531151 1.2640973535654736 1.2599578097577242 1.0669128761438413 0.9870358460201388 1.0232976907517468 0.8574081647536093 1.0 20.751555874964243 2.541734767422647 2.775467702159274 0.9751988906143066 1.233549672874591 0.749068841464873 0.07089464705936371 0.13953726406699593 2.128616741717611 0.026263254187766726 0.02334587121398046 348.1246432174974 -2.541734767422647 0.2583507822602843 VSQGSKDPAEGDGAQPEETPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSQGSKDPAEGDGAQPEETPR 21 1 Q14697;F5H6X6 Q14697 GANAB Neutral alpha-glucosidase AB 0 ;;; 214.92 6.1608e-25 2276700000.0 2017570.0 2045470.0 2015810.0 1730720.0 1881720.0 2310330.0 2420980.0 2232310.0 2998590.0 2247350.0 False True 2006707.6272931022 2113552.232437275 2299618.526265384 1949828.9745452795 2121345.888171745 2150622.325031836 2303867.9483582797 2398896.307640499 2259627.673547423 2103922.1989468625 0.9537936470738215 1.0045771813687943 1.0930150018933587 0.9267590671942547 1.0082815273462127 1.0221966981993678 1.0950347638859943 1.1402020040671126 1.0740072397536848 1.0 21.004649925442585 2.3233309084561298 3.684621432204361 1.0951380149387804 1.0003716191249317 0.31812934551955185 0.05274148850430378 0.22681414074816406 6.018857933945856 0.019313738388738046 0.015472882784377253 210.53820138135214 -2.3233309084561298 -0.09476639581384871 VSQGVEDGPDTKR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSQGVEDGPDTKR 13 1 Q9UBE0;M0QX65;B3KNJ4;Q9UBE0-2;Q9UBE0-3;A0A590UK93;A0A590UKC5;M0QYM8;M0R054 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed 0 ;; 141.65 6.4055e-05 2231460000.0 1939850.0 1894920.0 1807520.0 1726040.0 1801780.0 2177810.0 2094890.0 2017510.0 2789990.0 2192850.0 False True 1929406.0631375965 1957991.2666966722 2062003.1047545143 1944556.4870251308 2031226.0030132444 2027263.12071331 1993552.1674430545 2168066.8409081995 2102434.3484506267 2052900.4356066633 0.9398439542770264 0.9537682552627331 1.0044340529087379 0.9472239633728192 0.9894420439406192 0.9875116618182328 0.9710905277556383 1.0560993622993229 1.0241287458392132 1.0 20.969232228655876 1.7538161815558153 24.999999999999996 1.0310397708761392 0.9716277907715108 0.5582573381638818 0.022825686616746433 3.498561068144046 5740.497824604535 0.010290247178237013 0.005706644646586844 56.730443866542196 -1.7538161815558153 -0.05941198010462834 VSQPIEGHAASFAQFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSQPIEGHAASFAQFK 16 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 208.85 1.3793e-11 6198500000.0 5334200.0 5588200.0 5258500.0 4887900.0 4851100.0 5736800.0 6045600.0 5482300.0 6738900.0 6368800.0 False True 5305481.259885338 5774199.858861763 5998851.092298627 5506707.638832325 5468858.830277595 5340228.518974615 5753151.231565249 5891417.064555329 5078188.391633637 5962337.731395998 0.8898323944227718 0.9684456196529168 1.0061240007774734 0.9235819718556947 0.9172339905336322 0.8956601855769541 0.9649153554772264 0.988105224823609 0.8517109597621956 1.0 22.507446667164185 -1.32378923238885 5.12735678968788 1.0000204110777822 0.9401530825701763 0.1444774498874115 0.04604225551085937 1.0650958334659196e-05 1.4047197795407153e-06 0.04419930115722983 0.010414323834128946 0.047447219566583966 1.32378923238885 -0.0598673285076059 VSRPENEQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSRPENEQLR 10 1 Q8ND56-2;Q8ND56;Q8ND56-3;A0A140TA76;K7EMZ9 Q8ND56-2 LSM14A Protein LSM14 homolog A 0 ;;; 177.44 2.121e-06 2558030000.0 1155850.0 1334870.0 1500370.0 1231960.0 792110.0 1136890.0 1374560.0 1055870.0 1846910.0 1183880.0 False True 1149627.032027009 1379300.3410040445 1711609.0545501777 1387926.009684297 892980.5132961968 1058299.4702511954 1308067.2814708757 1134664.3809992198 1391763.7778260666 1108323.764829339 1.0372664274721475 1.2444922546765302 1.5443222538981949 1.252274880073524 0.8057036595562841 0.954864908463055 1.1802212701559218 1.023766174655595 1.2557375579151027 1.0 20.079947954035326 3.44830829923126 24.653507061957875 1.0418111882353653 1.293277755472451 0.3313013174773348 0.16163144075642316 199.1000162570624 170357.18648228978 0.045812632896623524 0.06203158705617187 2807.4258808586087 -3.44830829923126 0.2514665672370857 VSS(ph)PIEK ddPTM_BT-474_Trastuzumab_2h_R1 3 VSSPIEK 7 0 Q06190 Q06190 PPP2R3A Serine/threonine-protein phosphatase 2A regulatory subunit B subunit alpha 1 VS(0.038)S(0.962)PIEK;VSS(1)PIEK;VS(0.012)S(0.988)PIEK 143.37 0.0025448 662910000.0 2793030.0 2347110.0 2042650.0 1951770.0 1934300.0 2548680.0 2397660.0 2037830.0 2701510.0 2099450.0 True False 2777992.6368148024 2425232.1374920453 2330237.36496792 2198863.8818805157 2180621.639505667 2372495.7505473825 2281676.0258493344 2189903.2224910664 2035759.0588793734 1965461.3035704251 1.4134048997903679 1.2339251518645562 1.1855931026140523 1.1187520598274283 1.1094706548250963 1.2070935948917159 1.160885753234866 1.1141929981083443 1.0357665425318965 1.0 20.90643652927208 7.999999999999936 0.5873262918484691 1.106540062804928 18.6657714253099 0.7605591320848692 0.05357977426598601 79.66018883207812 0.6425832785074156 0.023444940124736777 1788.0892396374545 99999999.99998528 -7.999999999999936 17.55923136250497 VSS(ph)PMDEVLASLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSSPMDEVLASLK 13 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 VS(0.157)S(0.843)PMDEVLASLK 145.71 4.3987e-05 6052200.0 33655.0 28473.0 24870.0 24566.0 24680.0 31009.0 26983.0 29011.0 42281.0 31563.0 True False 33473.80521942203 29420.70659270802 28371.479826084804 27676.053081191276 27822.851710179355 28865.4208173344 25677.729204930034 31175.94813487303 31861.414086373425 29548.622317556197 1.1328381018811053 0.9956710088384669 0.9601625253854221 0.9366275281385169 0.9415955644621887 0.9768787359058743 0.8689992016877793 1.0550728152340951 1.078270714078033 1.0 14.850803246941648 1.606359781780451 24.999999999999993 1.050014276353482 0.97047378599396 0.197144695001936 0.06538114891754185 0.22733434284815104 3654.6236541812636 0.033097774412088526 0.01659335855924919 40.397992272737376 -1.606359781780451 -0.07954049035952215 VSS(ph)PPNAMMSSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSSPPNAMMSSR 12 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 VS(0.099)S(0.899)PPNAMMS(0.001)S(0.001)R;VS(0.014)S(0.986)PPNAMMSSR;VS(0.016)S(0.984)PPNAMMSSR 106.76 0.0019799 728700000.0 1107000.0 1099720.0 944150.0 987630.0 982730.0 1073740.0 1092170.0 1016100.0 1320030.0 1070230.0 True False 1101040.0349992635 1136323.5154052225 1077078.1133010837 1112663.8567360141 1107874.8404029387 999514.8811120838 1039337.5646054336 1091926.5416512536 994726.2939957789 1001927.0051299998 1.0989224058856502 1.1341380256117408 1.075006570125668 1.1105238715385721 1.1057440659154527 0.99759251521761 1.0373386077866817 1.089826440509582 0.9928131379857491 1.0 19.934345974890235 2.759647273551413 24.237287372575224 1.0351825638548362 1.1051485273616592 0.6315987371477336 0.03041962792657998 420.77807330783963 483646.8679049572 0.00959953256649196 0.010172151727240874 574.9727647372102 -2.759647273551413 0.06996596350682305 VSS(ph)PSPELGTTPASIFR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 VSS(0.998)PS(0.002)PELGTTPASIFR;VSS(0.997)PS(0.003)PELGTTPASIFR;VSS(0.999)PS(0.001)PELGTTPASIFR;VSS(0.991)PS(0.008)PELGTTPASIFR 254.68 5.0348e-27 619502000.0 490736.0 506188.0 448745.0 458642.0 459876.0 537728.0 525758.0 476148.0 575333.0 535022.0 True False 488093.9319018958 523036.16158289276 511924.3954385381 516706.0301743765 518438.4827013947 500556.1290355573 500325.07694939786 511680.58159055305 433549.89121722477 500876.43790462066 0.9744797218727247 1.0442418968058782 1.022057251445358 1.0316037870257537 1.0350626291590868 0.9993605032203084 0.99889920764185 1.0215704770045297 0.8655825237676352 1.0 18.934095220754752 1.2718872879098273 24.999545085320186 0.9327911874539405 1.0170268163356078 0.4629907810405086 0.03579020794402006 122.24484096095745 91700.29667332569 0.021495154419062718 0.007847943691204144 18.701967067612472 -1.2718872879098273 0.08423562888166725 VSS(ph)PTKPK ddPTM_BT-474_Trastuzumab_2h_R1 3 VSSPTKPK 8 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 VS(0.203)S(0.797)PTKPK;VS(0.014)S(0.985)PT(0.001)KPK;VS(0.151)S(0.848)PT(0.001)KPK 151.22 0.001254 1434260000.0 3021960.0 2185700.0 1852430.0 1789740.0 1773800.0 2330900.0 2608200.0 2440380.0 4149400.0 2550830.0 True False 3005690.103131323 2258449.703216448 2113236.0423898012 2016320.9004938225 1999682.9158636997 2169770.369348409 2482031.4017084264 2622493.5475985496 3126835.969111375 2388033.845524563 1.2586463582852125 0.9457360528825963 0.8849271740223603 0.8443435189466132 0.8373762874472339 0.9086011797591548 1.0393619028306593 1.0981810632681734 1.3093767389316564 1.0 21.187391853340802 1.849551948871229 2.296292442327439 1.1582283677576521 0.9357276188058956 0.2837863588754592 0.1331171805798792 0.34700188960905387 3.4101901879380154 0.08087920276240353 0.03853163752470559 70.72157904385844 -1.849551948871229 -0.22250074895175653 VSS(ph)PVFGATSSIK ddPTM_BT-474_Trastuzumab_2h_R1 4 VSSPVFGATSSIK 13 0 F6Q6H0;I6L8A6;Q99708-3;Q99708;Q99708-2 F6Q6H0 RBBP8 DNA endonuclease RBBP8 1 VS(0.024)S(0.976)PVFGATSSIK;VS(0.03)S(0.97)PVFGATSSIK;VSS(1)PVFGATSSIK;VS(0.001)S(0.999)PVFGATSSIK 264.58 3.1340000000000003e-24 2002100000.0 4994570.0 4213600.0 3884780.0 3638630.0 3487640.0 4866080.0 4948520.0 4432460.0 7209230.0 5075710.0 True False 4967679.79006889 4353847.128825011 4431723.256886928 4099280.184922859 3931770.2811381677 4529699.343120212 4709141.1824178295 4763232.672775822 5432611.865232747 4751773.842266046 1.0454369157644676 0.9162572280057691 0.9326460820731125 0.8626841935238182 0.827432115174734 0.9532649266321288 0.9910280536777638 1.0024114848244357 1.1432808137691206 1.0 22.18003474291959 1.8771163427006963 1.6304502717974856 1.0627497098884302 0.9158313624274386 0.4432257235119247 0.06438322711682845 0.33853277309850377 1.6900812887394812 0.04550118075582387 0.02011021367897961 75.3557406412957 -1.8771163427006963 -0.14691834746099164 VSS(ph)QAEDTSSSFDNLFIDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSSQAEDTSSSFDNLFIDR 19 0 H8Y6P7;P0CAP2-3;P0CAP2;Q9BZD3 H8Y6P7 GCOM1;POLR2M;GCOM2 DNA-directed RNA polymerase II subunit GRINL1A;Putative GRINL1B complex locus protein 2 1 VS(0.039)S(0.961)QAEDTSSSFDNLFIDR;VS(0.047)S(0.953)QAEDTSSSFDNLFIDR;VS(0.021)S(0.979)QAEDTSSSFDNLFIDR 220.34 3.0651e-19 263334000.0 374402.0 309724.0 274816.0 304046.0 285019.0 356969.0 277978.0 292180.0 402113.0 316552.0 True False 372386.2612319726 320032.97610788804 313507.7040565068 342538.192425461 321314.48021003255 332292.5732446398 264531.1421609178 313983.95525997784 303017.63918814337 296349.3803461978 1.2565785047262386 1.079917817725898 1.0578989694200287 1.1558593172197797 1.0842421193345175 1.1212865464960744 0.8926326819104204 1.0595060293130332 1.0225013422810456 1.0 18.17693951533224 2.290802884243879 24.994068102345896 1.0013572057880042 1.1202396905804413 0.4955858529358945 0.06505182641826572 88.15467010981492 42175.05181149039 0.02187026693540448 0.018297959849383465 195.34526296579116 -2.290802884243879 0.11888248479243702 VSS(ph)SGLTDSLFILK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSSSGLTDSLFILK 14 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 VSS(1)SGLTDSLFILK;VS(0.035)S(0.965)SGLTDSLFILK 416.08 5.051999999999997e-133 1090830000.0 1591520.0 1638040.0 1576810.0 1379130.0 1328720.0 1858930.0 1873970.0 1587820.0 2377560.0 1682460.0 True False 1582951.4331544957 1692561.1711839098 1798811.1421217856 1553727.7165946166 1497924.61605954 1730426.5445505327 1783318.9118394074 1706311.1911865894 1791642.1956717682 1575083.962373524 1.004994953265295 1.0745847279362537 1.1420414308651348 0.9864412016825279 0.9510125503419443 1.0986249532646628 1.1322056185195932 1.0833144339907548 1.1374899614696783 1.0 20.586997305156586 2.5831435046811277 21.302273419206372 1.0978972001447345 1.0364946289374002 0.18508842675396675 0.05994835299961168 16.43627597432072 3286.8564283492497 0.019826845726036036 0.018692896867344884 382.9512616643833 -2.5831435046811277 -0.06140257120733428 VSS(ph)SPQKEGR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSSSPQKEGR 10 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 VS(0.139)S(0.659)S(0.203)PQKEGR;VS(0.083)S(0.458)S(0.458)PQKEGR;VS(0.106)S(0.447)S(0.447)PQKEGR 103.46 0.0017024999999999998 512530000.0 447875.0 501250.0 436454.0 428103.0 421391.0 547710.0 616020.0 460752.0 784030.0 565680.0 True False 445463.6907635903 517933.8032379759 497902.9294738248 482300.7959056101 475052.6460698616 509848.0968706581 586220.759175073 495135.6538912485 590816.3119637507 529577.8180969862 0.8411675782878214 0.9780126461851207 0.9401884151096365 0.9107269591440519 0.8970403023618733 0.9627444342415513 1.1069586737632453 0.9349629780010349 1.115636440526951 1.0 19.01448316910521 2.4700835383325495 24.521131823650926 1.0270790327790735 0.9195060167080492 0.5036242499173269 0.05831920050746244 124.32171369054811 433162.0332206627 0.019145596188060506 0.016053714514292668 295.17769585188506 -2.4700835383325495 -0.10757301607102432 VSS(ph)SSELDLPSGDHCEAGLLQLDVPLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSSSSELDLPSGDHCEAGLLQLDVPLLR 28 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 VS(0.123)S(0.631)S(0.123)S(0.123)ELDLPSGDHCEAGLLQLDVPLLR 187.08 5.3465e-18 124390000.0 45112.0 43289.0 41206.0 39810.0 38356.0 50639.0 45384.0 49827.0 57630.0 48873.0 True False 44869.122004414385 44729.848196246916 47007.446631027386 44849.94191818876 43240.409246176605 47138.44512138399 43188.60253628375 53545.343756379305 43427.85870243613 45753.8832977196 0.9806625967123251 0.9776186188435786 1.0273979658764891 0.9802433954370843 0.9450653393682921 1.0302610778336578 0.943933048376602 1.1702906922230147 0.9491622474938778 1.0 15.481606574893824 VSSAEGAAKEEPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSSAEGAAKEEPK 13 1 P05114;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 ; 111.88 0.00040603 529970000.0 914420.0 821420.0 850110.0 862630.0 759300.0 984310.0 1123030.0 1049360.0 1694480.0 1054100.0 False True 909496.8643216135 848760.4681411237 969798.0987114172 971838.8695525533 855992.354276303 916266.9665165088 1068704.7485087852 1127668.5717421114 1276898.1088687135 986826.435539586 0.9216381235513927 0.8600909314686433 0.9827443446842221 0.9848123586405165 0.867419359117853 0.9284986027107228 1.082971341281944 1.1427222975897624 1.293943963074438 1.0 19.912436838140337 2.099862396887386 2.671891211368678 1.1575699449886294 0.9227070348090535 0.6397205338365874 0.07643727604578109 0.16370287634951827 2.3083435471519507 0.03470997404167002 0.02182675680434411 125.85265934309228 -2.099862396887386 -0.23486291017957595 VSSDNVADLHEK ddPTM_BT-474_Trastuzumab_2h_R1 5 VSSDNVADLHEK 12 0 P28074;P28074-3 P28074 PSMB5 Proteasome subunit beta type-5 0 ;;;; 224.43 2.0076e-11 6530990000.0 9115760.0 9084020.0 7672920.0 7449230.0 7743780.0 9514810.0 9767850.0 9199220.0 12597190.0 9649440.0 False True 9066681.761016143 9386376.114293944 8753200.441783793 8392301.754213234 8729904.482019952 8857073.580153555 9295341.778689394 9885712.50909264 9492781.318197828 9033604.477898778 1.003661581951954 1.0390510385149407 0.9689598944916163 0.9290092094186183 0.9663810833624777 0.9804584207580577 1.0289737392677496 1.0943264710424938 1.050829858825727 1.0 23.10687031835911 2.100932809213803 3.8914742879216138 1.0594883753984847 0.9803247960230621 0.43486117343287456 0.034445102123190276 0.18912584885571507 5.403819256977405 0.014880195126950548 0.010406450838054394 126.16323291955855 -2.100932809213803 -0.07916357937542262 VSSPLSPLSPGIKS(ph)PTIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 VSSPLSPLS(0.002)PGIKS(0.971)PT(0.028)IPR;VSSPLSPLSPGIKS(0.999)PT(0.001)IPR 262.98 1.8632e-31 2889800000.0 1520970.0 1227330.0 1263210.0 1249060.0 1239670.0 1497900.0 1591560.0 1537440.0 2454190.0 1770320.0 True False 1512781.2665156545 1268180.9371133477 1441058.987981849 1407190.8679309925 1397534.6264002451 1394353.698677325 1514570.162450373 1652171.579762133 1849387.758961159 1657336.6619527945 0.9127784965145136 0.7651921098632336 0.8695028723276347 0.8490676036050141 0.8432412427017503 0.8413219418162126 0.913857876447261 0.9968835045351766 1.1158793511404472 1.0 20.66043526252638 1.769104758841559 1.9802392729691571 1.05794834831792 0.8443735934402741 0.7896631438996712 0.04435811355840472 0.12108960608609345 0.9429382906479897 0.02792199405579122 0.011874908251454666 58.76310815407338 -1.769104758841559 -0.21357475487764588 VSSS(ph)PGVK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSSSPGVK 8 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 VSS(0.031)S(0.969)PGVK;VSS(0.001)S(0.999)PGVK 182.16 0.00024130000000000004 940190000.0 3951800.0 3467200.0 2971600.0 3047000.0 2946200.0 3439300.0 3859000.0 3743400.0 5180800.0 3746000.0 True False 3930523.947886253 3582603.6560333376 3389975.450389775 3432749.887584055 3321381.1065044706 3201549.2862413567 3672325.427188416 4022751.5166000417 3904061.2591632986 3506927.07288805 1.1207886181246873 1.0215791721847713 0.9666512533430123 0.978848381000718 0.9470915811685877 0.9129215463282484 1.0471633287099282 1.1470873026416246 1.1132427843582722 1.0 21.741775999151656 2.0013679485631437 24.98513388283253 1.101621133791842 0.9882456969269908 0.3154141590517108 0.06255386086014195 44.242910505810904 808069.740692742 0.024080396599226037 0.017650764975874072 100.31547838586111 -2.0013679485631437 -0.11337543686485119 VSSS(ph)SELDLPSGDHCEAGLLQLDVPLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSSSSELDLPSGDHCEAGLLQLDVPLLR 28 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 VS(0.02)S(0.139)S(0.737)S(0.104)ELDLPSGDHCEAGLLQLDVPLLR;VS(0.012)S(0.052)S(0.468)S(0.468)ELDLPSGDHCEAGLLQLDVPLLR 296.67 1.5650999999999994e-71 410620000.0 111342.0 120179.0 89098.0 107640.0 111550.0 121316.0 113837.0 119044.0 150246.0 113567.0 True False 110742.54704325912 124179.08536526043 101642.22394630105 121267.21296342222 125755.23129134956 112929.71046714627 108330.2694104294 127927.66777318339 113219.88649325381 106319.05683039961 1.0416058075074526 1.1679852047911896 0.9560113396081095 1.140597147667214 1.1828098841391583 1.0621775045210569 1.0189167646891195 1.2032430646676435 1.0649067991062262 1.0 16.69804068589284 VSSSS(ph)ELDLPSGDHCEAGLLQLDVPLLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSSSSELDLPSGDHCEAGLLQLDVPLLR 28 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 VS(0.051)S(0.329)S(0.065)S(0.555)ELDLPSGDHCEAGLLQLDVPLLR 248.82 4.5661e-46 253280000.0 42469.0 43920.0 37219.0 46464.0 43543.0 51805.0 49781.0 43077.0 58970.0 47195.0 True False 42240.3516227495 45381.85064979933 42459.11168665264 52346.33763593875 49087.94295041892 48223.84228585277 47372.90284811261 46291.62448057378 44437.6336575162 44182.97469432766 0.9560323159538744 1.027134342215885 0.960983545820505 1.1847626376016533 1.1110148940859106 1.091457572050799 1.072198130068288 1.0477253919826461 1.0057637351253588 1.0 15.43120293342332 3.7978709347672317 24.999937065084403 1.0757255244018016 0.9859584268256343 0.3861472890889923 0.05293599775073362 276.1235676649728 116388.0410701847 0.013801055689619424 0.024880201704101018 6278.717378500914 -3.7978709347672317 -0.0897670975761673 VSSTLPHRPLLS(ph)PSGIHLNNMGPQHQQLS(ph)PSAMWPQMHLPDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VSSTLPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGR 43 1 Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5;Q96PN7 Q05GC8;Q96PN7 BCAR2;TRERF1 Transcriptional-regulating factor 1 2 VSSTLPHRPLLS(0.985)PS(0.014)GIHLNNMGPQHQQLS(0.995)PS(0.005)AMWPQMHLPDGR;VS(0.036)S(0.038)T(0.04)LPHRPLLS(0.868)PS(0.019)GIHLNNMGPQHQQLS(0.942)PS(0.057)AMWPQMHLPDGR 197.22 1.0181000000000001e-35 594660000.0 56549.0 92119.0 99050.0 109820.0 94331.0 118545.0 101465.0 72332.0 96849.0 96669.0 True False 56244.54646718453 95185.12522788862 112995.37904196615 123723.20073990159 106343.49370635844 110350.263174914 96556.7503160593 77729.78113445376 72981.86166011172 90499.50165750517 0.6214901235593726 1.0517751311837735 1.2485745995552162 1.3671147185774715 1.1750726993924758 1.219346638974145 1.0669312929642172 0.8588973387789655 0.8064338512747965 1.0 16.46562222745551 1.8345382086478574 3.933665203491737 0.8749949463646829 1.1320245926032257 0.21244358568500332 0.19154370772147197 0.3332229336973994 8.498870323102917 0.10045560734093162 0.054551756177776946 68.31848210224834 -1.8345382086478574 0.25702964623854285 VSTEVDAR ddPTM_BT-474_Trastuzumab_2h_R1 3 VSTEVDAR 8 0 P37837;F2Z393 P37837 TALDO1 Transaldolase 0 ;; 118.32 0.004439800000000001 1354460000.0 1787520.0 2134070.0 1956500.0 2003790.0 1987220.0 2035120.0 2145580.0 1864170.0 2371750.0 2120620.0 False True 1777896.190932142 2205101.2298774444 2231958.193797143 2257469.6085467804 2240280.6878242525 1894436.9445571771 2041790.0984884475 2003283.8314634534 1787263.992321758 1985280.2160458774 0.8955391669963919 1.1107254341502426 1.1242534810741123 1.1371037651516158 1.1284455814939136 0.9542415872809962 1.0284644363983648 1.0090685512664979 0.9002577962931035 1.0 20.92091122292312 2.734975542710043 24.946249012938804 0.985636951286583 1.086682498695298 0.31658176661048587 0.07326436912681024 384.2733607592187 2673902.9203231926 0.023497838589622948 0.022955890618505864 543.2197392161678 -2.734975542710043 0.10104554740871508 VSTLAGPS(ph)SDDENEEESKPEKEDEPQEDAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSTLAGPSSDDENEEESKPEKEDEPQEDAK 30 2 A0A087X2H1;Q9ULT8;H0YJP0;G3V4V5 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 VSTLAGPS(0.556)S(0.444)DDENEEESKPEKEDEPQEDAK 219.76 7.189899999999998e-35 260750000.0 256680.0 118820.0 89464.0 87020.0 108390.0 164690.0 168480.0 166190.0 349610.0 155070.0 True False 255298.06339982894 122774.8518717931 102059.75356497182 98036.72307763842 122192.82402213692 153305.36793855994 160329.9787438986 178591.94169572042 263453.30003398703 145173.29983789354 1.7585745015433638 0.8457123452376473 0.7030201399219823 0.6753082225664792 0.8417031517405916 1.056016279231422 1.104404039330439 1.2301982657633566 1.8147503730243082 1.0 17.147416612801145 1.7834130679693396 1.9889186543276136 1.414311140464528 0.9443518701162441 0.18579973000435623 0.3427361228939603 0.4571342973297979 3.555838780166194 0.22925790783356048 0.09887306190701257 60.73136856885465 -1.7834130679693396 -0.469959270348284 VSTNGSDDPEDAGAGENRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSTNGSDDPEDAGAGENRR 19 1 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UJW8;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 100.45 0.0010171 390480000.0 243840.0 295330.0 303140.0 302610.0 296220.0 335880.0 344550.0 299930.0 380960.0 352170.0 False True 242527.19253317066 305159.8805192448 345819.47705988504 340920.394972698 333941.8611665044 312661.40617647377 327882.80019118113 322312.29961368017 287077.5126024649 329694.20909209416 0.7356125338113689 0.9255845935528819 1.0489097700933128 1.0340502974302106 1.0128836114110324 0.9483375732848781 0.9945057909694525 0.9776098297305793 0.8707387169250368 1.0 18.330769021476993 4.688189229821231 3.24938185807012 0.9864986133868832 0.7135300534677721 0.714650542343104 0.04737544550624703 0.14974208636560207 2.5885944193491603 0.011760069078259024 0.09534715107312515 48774.09612130767 -4.688189229821231 -0.27296855991911106 VSTTTDSPVS(ph)PAQAASPFIPLDELSSK ddPTM_BT-474_Trastuzumab_2h_R1 3 VSTTTDSPVSPAQAASPFIPLDELSSK 27 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 VS(0.025)T(0.025)T(0.025)T(0.025)DS(0.133)PVS(0.768)PAQAASPFIPLDELSSK;VSTT(0.001)T(0.004)DS(0.266)PVS(0.729)PAQAASPFIPLDELSSK;VS(0.003)T(0.003)T(0.004)T(0.016)DS(0.012)PVS(0.964)PAQAASPFIPLDELSSK 195.94 4.1773e-25 181998000.0 234745.0 222595.0 202499.0 191283.0 185264.0 254899.0 244984.0 251543.0 332573.0 255261.0 True False 233481.15900262148 230003.9400134809 231009.09904713888 215499.40818731222 208856.27225424073 237278.4320977047 233133.18799023773 270314.41596947244 250614.8403998832 238970.02444006276 0.9770311550567801 0.9624802966497973 0.9666865105296057 0.9017842664252758 0.8739852320123312 0.9929213199591803 0.9755750267695645 1.1311645324674238 1.0487291909816125 1.0 17.86647013739663 1.9230700537595056 5.192629705993004 1.071762613676367 0.9451135328970949 0.5577961331540748 0.04506151145665969 0.14811739516694605 6.9790761523897675 0.020772705427930756 0.012457773704891166 83.76643904684582 -1.9230700537595056 -0.12664908077927206 VSVHVIEGDHR ddPTM_BT-474_Trastuzumab_2h_R1 11 VSVHVIEGDHR 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;;;;;; 214.26 7.9118e-12 50151753000.0 4905024.1 8307841.3 8927632.1 9396260.1 9295846.0 9492889.5 9749455.2 6059973.3 7991588.5 8745454.5 False True 4878615.995245005 8584362.775474379 10184565.099310711 10585825.665239757 10479616.887304042 8836668.39272325 9277836.805440355 6512199.279566896 6022168.59597455 8187312.106449709 0.595875170240766 1.0484958511245572 1.2439448950880507 1.2929549438942938 1.2799825817130541 1.0793125115826472 1.1331969130786603 0.7954013716463537 0.735548922244026 1.0 22.964958462317664 1.7376538984958951 6.787739641864277 0.8266125185724978 1.1142677346915728 0.2501392577067938 0.19766070465838734 0.17347950590055863 22.979030655394116 0.10108296721095639 0.05313164288380302 54.65802041242563 -1.7376538984958951 0.28765521611907496 VSVIQFLEAPIGDEDAEEAAAEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSVIQFLEAPIGDEDAEEAAAEKR 24 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;A0A0G2JPP5;Q14160-3 A0A0G2JNZ2 SCRIB Protein scribble homolog 0 171.79 1.0023e-11 43193000.0 45374.0 43533.0 41074.0 34104.0 37701.0 54173.0 50018.0 43148.0 56653.0 59996.0 False True 45129.71142552533 44981.96958874577 46856.86217839193 38421.5629032381 42501.99887866578 50428.14801952516 47598.43825268465 46367.9228611045 42691.627261306836 56167.00391484017 0.8034915213556795 0.8008611186907346 0.8342417952261761 0.6840593271005245 0.7567076026185564 0.8978251376196564 0.8474448508033812 0.8255366964456047 0.7600837553314298 1.0 15.777435227641604 2.7521332783295875 24.295837359635346 0.8515377980456915 0.7754025709494062 0.2919996395939186 0.06843425308703545 818.1217800483058 1464482.394398955 0.02063614356754003 0.021768566429102885 565.1103719285708 -2.7521332783295875 -0.07613522709628529 VSVPSNLSYGEWLHGFEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VSVPSNLSYGEWLHGFEK 18 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2;G3V4Y7;B7Z6P3;G3V5P0 Q86UP2-2;G3V5P0 KTN1 Kinectin 0 ; 133.24 1.3097e-05 1368930000.0 718860.0 746150.0 610000.0 694730.0 680870.0 770450.0 805730.0 712840.0 847070.0 793970.0 False True 714989.7376328544 770985.151692801 695882.6977849512 782682.7467677281 767574.7586673336 717190.6049442183 766753.7617124963 766035.7405281758 638320.9486564734 743298.1548480844 0.9619151251343874 1.0372488437703378 0.9362093706894455 1.0529862635373999 1.0326606539528016 0.9648760733043902 1.031556121472151 1.030590127974606 0.8587683751037075 1.0 19.503581501133564 1.263285111419509 24.99999978929472 0.9293840244778656 1.0081665182814097 0.28330046065583636 0.048650524740697705 221.42070487387934 223888.75181838078 0.02992291088375665 0.01091587043686667 18.335177194560835 -1.263285111419509 0.07878249380354407 VSVS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 4 VSVSPGR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 VS(0.002)VS(0.998)PGR;VS(0.015)VS(0.985)PGR;VS(0.001)VS(0.999)PGR;VSVS(1)PGR 100.02 0.010597 7736470000.0 6417910.0 7484640.0 7367170.0 7694280.0 7719590.0 8075950.0 8465040.0 7693950.0 8675080.0 7961790.0 True False 6383356.685656831 7733761.717839568 8404403.499410426 8668375.059087701 8702634.028905313 7517678.5852414435 8055553.6756069 8268111.61808647 6537222.774116418 7453661.745768645 0.856405469336006 1.0375788413298916 1.1275536489406037 1.1629686662409433 1.1675649265739347 1.0085886429591657 1.0807511730968933 1.1092684240440853 0.8770484893317734 1.0 22.829517919008744 1.2458532785087053 24.99880663728458 0.9385242317165662 1.0762913663071032 0.2467775784863152 0.09031594826339616 199.00296584510235 682187.4683196109 0.06412666844082515 0.022362715654021044 17.613808832220155 -1.2458532785087053 0.13776713459053702 VSVT(ph)PPEESQNSDTPPRPDRLPLDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSVTPPEESQNSDTPPRPDRLPLDEK 26 2 Q05209;Q05209-2;Q05209-3;H3BM04 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 VS(0.01)VT(0.987)PPEES(0.002)QNS(0.001)DTPPRPDRLPLDEK 122.94 0.0062722 133050000.0 149130.0 143020.0 117780.0 134460.0 134340.0 160850.0 169800.0 158060.0 237700.0 177230.0 True False 148327.10064990073 147780.33424258433 134362.40023788792 151482.62221350576 151447.40270443648 149730.81810017207 161586.1253010086 169855.23981241704 179122.02001681514 165919.02966576297 0.8939728067883446 0.8906774258521263 0.8098070517200795 0.9129912495188843 0.9127789802623666 0.902433062692077 0.9738854284919408 1.0237236810906103 1.079574900948065 1.0 17.340119836499014 2.0892180353437046 1.37961929506643 1.0449647862726872 0.8792639262555686 0.8086634638169857 0.03262292976536887 0.17235776246198564 0.6184442649327065 0.021649225503174573 0.01100032931838958 122.80556155173201 -2.0892180353437046 -0.1657008600171186 VSWQDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VSWQDLK 7 0 Q13243;Q13243-3 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 0 96.711 0.029153 328700000.0 605660.0 612190.0 555340.0 513510.0 445050.0 706700.0 635990.0 582210.0 849770.0 603740.0 False True 602399.1938551526 632566.3740733296 633527.0448981886 578520.3133486331 501724.4794819818 657847.4923928604 605224.7339822655 625657.4666024756 640355.569834619 565208.7963121806 1.0657993962330883 1.119172911321687 1.120872585550268 1.0235515036625513 0.8876798853018298 1.1639017239029537 1.0707985047847397 1.1069492737634385 1.1329540056926728 1.0 19.108424392863814 VSYDEWNR ddPTM_BT-474_Trastuzumab_2h_R1 1 VSYDEWNR 8 0 P35573-2;P35573-3;P35573 P35573-2 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase 0 105.14 0.010343 207680000.0 178990.0 218540.0 189680.0 196920.0 188810.0 229710.0 219400.0 189570.0 265580.0 214570.0 False True 178026.33772765842 225813.97178978033 216385.29527188456 221850.0518093375 212853.83433545218 213830.68837917663 208786.78381060864 203716.67601695497 200131.36758967512 200875.95889738092 0.8862500953566305 1.1241463290544351 1.0772085244029959 1.1044131563930524 1.0596282178505505 1.0644911892538307 1.0393816410716876 1.0141416480855494 0.9962932781414316 1.0 17.615945385173244 1.7655305622403112 1.9194083289301886 0.9985780902596316 1.059710285634196 0.11273948669002298 0.06053538360526027 0.6170887631254083 4.51294073245045 0.04031761417481559 0.016940683485679748 58.28147872881318 -1.7655305622403112 0.06113219537456438 VSYGIGDEEHDQEGR ddPTM_BT-474_Trastuzumab_2h_R1 8 VSYGIGDEEHDQEGR 15 0 P27695;G3V3M6;G3V3C7;G3V5M0;G3V359 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;;;;;;; 309.14 4.1493e-56 43107870000.0 11415590.0 13827240.0 12746710.0 12681540.0 12413470.0 13708370.0 13387030.0 11992190.0 14616880.0 13179380.0 False True 11354129.73183127 14287471.324656924 14541335.971610516 14287021.663732404 13994251.824098865 12760742.647931958 12739448.21547917 12887108.112906944 11014745.780157275 12338260.684965108 0.9202374647236089 1.1579809901461269 1.1785563899885811 1.1579445457123447 1.1342159305445443 1.0342416142561868 1.0325157281692818 1.0444833710322428 0.8927308363308767 1.0 23.556635697431915 2.00792727024213 1.0977741568543038 0.9659869455026264 1.1156762522218082 0.34568041509481384 0.07729440180471338 0.5628298333372047 1.2515455741888897 0.059887595327165984 0.02807442369410114 101.84208224463612 -2.00792727024213 0.1496893067191818 VSYLVFDEADR ddPTM_BT-474_Trastuzumab_2h_R1 5 VSYLVFDEADR 11 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 ;;;; 179.09 1.688e-05 867513000.0 660576.0 790260.0 711712.0 768415.0 680074.0 747347.0 760820.0 647294.0 888353.0 771272.0 False True 657019.5322128937 816563.326377743 811914.8632883985 865696.2602126353 766677.392785595 695684.6609556059 724016.2299853556 695598.3651723315 669430.3064703314 722048.7606408191 0.9099378989720696 1.1308977604961779 1.1244598807535147 1.198944319832817 1.0618083356381194 0.9634870923927422 1.002724842769331 0.9633675772187285 0.9271261761826324 1.0 19.46173674140986 2.8449170000967765 4.239000189848726 0.9713113472953538 1.0995359973087013 0.3860817047290802 0.07186846135800364 0.23094447975882465 7.085735336519043 0.0225230603971637 0.02397064177957954 699.7082589411277 -2.8449170000967765 0.12822465001334749 VT(ph)SPISTDGMAEELTMDGVAGEHSQIPNGSR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTSPISTDGMAEELTMDGVAGEHSQIPNGSR 31 0 F8VZQ2;Q9UKN5 F8VZQ2 PRDM4 PR domain zinc finger protein 4 1 VT(0.55)S(0.449)PISTDGMAEELTMDGVAGEHSQIPNGSR;VT(0.542)S(0.458)PISTDGMAEELTMDGVAGEHSQIPNGSR;VT(0.492)S(0.492)PIS(0.008)T(0.008)DGMAEELTMDGVAGEHSQIPNGSR 224.29 1.6064999999999994e-34 292425000.0 42154.3 45260.6 42990.9 41304.700000000004 48375.7 51593.0 53598.0 43749.0 59240.0 65554.0 True False 41927.34593258301 46767.07171038951 49043.64503639848 46533.87078493371 54536.05864976182 48026.497346858436 51005.25997575656 47013.77253292063 44641.09577533083 61370.28759639697 0.6831864013465133 0.7620474588281901 0.7991431514698949 0.7582475593232465 0.8886394505500674 0.7825692078014321 0.831106745192295 0.7660673328127078 0.7274056799100237 1.0 15.905252723867687 -2.5030724584449486 2.3249064960949504 4.223566089694882 0.7818809512844915 0.6127463660374857 0.05294257357597572 5565527.972369112 487016.69641118514 94589948.78031501 0.013705204766184071 0.0031399847696637474 2.5030724584449486 -3.4416851384103904 VTAAMVLTSLST(ph)SPLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTAAMVLTSLSTSPLVR 17 0 Q6ZNC4;E5RGL7 Q6ZNC4 ZNF704 Zinc finger protein 704 1 VTAAMVLTSLS(0.002)T(0.798)S(0.2)PLVR 183.6 7.6288e-09 158420000.0 275750.0 274060.0 273210.0 244520.0 269750.0 348480.0 310650.0 284160.0 310830.0 313900.0 True False 274265.39263870544 283181.9214272318 311675.593216109 275476.20692879974 304101.06356648594 324390.3978336837 295622.672701757 305365.46213524276 234230.11140861007 293866.6332566892 0.9332988560124746 0.9636409492597127 1.060602184610268 0.9374191410433943 1.034826785866693 1.1038694466218366 1.0059756339997061 1.0391294130644273 0.7970626294412021 1.0 18.16480203360336 1.2659251586315319 24.999777579649958 0.898531042788415 1.0126344969087957 0.29687461228683887 0.06841580253046108 212.41499776331176 194059.14836555644 0.043705275730358636 0.01595057010328957 18.446974976138417 -1.2659251586315319 0.1141034541203807 VTAAMVLTSLSTS(ph)PLVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTAAMVLTSLSTSPLVR 17 0 Q6ZNC4;E5RGL7 Q6ZNC4 ZNF704 Zinc finger protein 704 1 VTAAMVLTSLS(0.003)T(0.28)S(0.717)PLVR 123.59 5.5676000000000014e-05 217290000.0 217320.0 215760.0 229860.0 201380.0 229570.0 248910.0 230610.0 235130.0 238400.0 229490.0 True False 216149.97326652176 222941.44117032568 262222.2900210636 226874.68735204358 258804.37873200438 231703.43757111486 219454.5132842498 252676.5945659474 179649.5143963346 214843.75172372593 1.00607986749587 1.03769106330359 1.2205255583055687 1.0559985362934297 1.2046167349786776 1.0784741734964176 1.0214609990913444 1.1760946852709584 0.8361868239358962 1.0 17.712928294423808 1.240220211570211 24.999997239511135 0.9180933985423442 1.1030145165576746 0.44505900656303177 0.08125096559809948 35.508000711284986 534962.0684947643 0.058416782869835586 0.01878750388891657 17.386822143128843 -1.240220211570211 0.1849211180153304 VTAEADSSS(ph)PTGILATSESK ddPTM_BT-474_Trastuzumab_2h_R1 4 VTAEADSSSPTGILATSESK 20 0 A0MZ66;A0MZ66-3;A0MZ66-4;A0MZ66-6;A0MZ66-5;A0MZ66-8;A0MZ66-7 A0MZ66 KIAA1598 Shootin-1 1 VTAEADSSS(0.999)PT(0.001)GILATSESK;VTAEADSS(0.001)S(0.997)PT(0.002)GILATSESK;VTAEADSS(0.006)S(0.991)PT(0.003)GILATSESK;VTAEADSS(0.012)S(0.985)PT(0.004)GILATSESK 499.0 3.768599999999996e-276 816060000.0 2138330.0 1909800.0 1720160.0 1536200.0 1566350.0 2219520.0 2250420.0 1910480.0 2674010.0 2227090.0 True False 2126817.468870798 1973366.53850152 1962343.5761012475 1730682.7624898662 1765815.3880161855 2066089.8065880893 2141558.5871607526 2053049.718820868 2015036.065398248 2084955.2094923216 1.0200782535700945 0.9464791039717476 0.9411921978789513 0.8300815070800877 0.8469320491763248 0.9909516507508926 1.027148486169261 0.9846972776555606 0.966464917914904 1.0 20.991584960314306 2.602235671850068 9.990674482488407 0.9954938165928621 0.915158706323899 0.35757679516010255 0.051519542907128395 0.46459314665290147 35.51173567450502 0.01814880645989069 0.017102542173442908 400.1618404721263 -2.602235671850068 -0.08033511026896312 VTAGWPSEPGQGDLNPES(ph)PAALGQDLLEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VTAGWPSEPGQGDLNPESPAALGQDLLEPR 30 0 Q92766;Q92766-2;Q92766-5;Q92766-3;A0A087X055;Q92766-4 Q92766 RREB1 Ras-responsive element-binding protein 1 1 VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR;VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR;VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR;VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR 198.45 1.6405000000000002e-25 504902000.0 247261.0 418575.0 416286.0 387152.0 385638.0 436529.0 429687.0 377967.0 415338.0 403353.0 True False 245929.77424927996 432507.01584106917 474895.45037722343 436165.4035044112 434746.71344449476 406352.77770873526 408901.3982462575 406172.8168175363 312983.51514406415 377610.66621212335 0.6512786747160594 1.1453781753032042 1.257632511128407 1.1550664282862038 1.1513094103127774 1.0761157299525697 1.0828650640301472 1.0756391520714303 0.8288524216851576 1.0 18.52653999092153 1.3174640818008014 7.870000914624165 0.9155102656285614 1.0884520319712054 0.1379839456992933 0.15694338282125891 0.3935747895806928 33.325855475876466 0.10416214246340069 0.037807311794854304 20.771319298745258 -1.3174640818008014 0.17294176634264402 VTAIHIDPATHR ddPTM_BT-474_Trastuzumab_2h_R1 9 VTAIHIDPATHR 12 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;;;; 213.63 3.6769e-09 38483156000.0 15547384.0 18221242.0 16283241.0 17033491.0 16733344.0 18750635.0 17980317.0 12863947.0 19385016.0 17490636.0 False True 15463678.612020764 18827725.024996616 18575779.796332017 19189929.21411681 18864236.172099657 17454447.736697074 17110540.37522884 13823920.04693929 14607838.55270628 16374368.635993127 0.9443831976537684 1.1498290678280365 1.134442506412118 1.1719492605006274 1.1520588421732156 1.0659615723033 1.0449587862348175 0.844241408890258 0.8921161406245753 1.0 23.96493594440165 1.9569834030321704 3.190527215631787 0.8987557825277329 1.111091045464413 0.5807698750480597 0.07168681592115285 0.1583538149070848 3.0378033539955847 0.03506607718433975 0.01992986598724288 90.5697988145263 -1.9569834030321704 0.21233526293668004 VTANNDKNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTANNDKNR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 ; 91.636 0.009684299999999998 143784000.0 139895.0 141063.0 129467.0 116273.0 115112.0 104336.0 139770.0 126711.0 177732.0 154596.0 False True 139141.8208637958 145758.19668061566 147694.8282526627 130993.14987826071 129770.83087772128 97123.49790052575 133008.79112674904 136166.8182454206 133932.33008678418 144729.55092370545 0.9613919201417598 1.0071073650843596 1.0204884027486578 0.9050891752390918 0.8966436366967676 0.6710688817912842 0.9190161254412028 0.9408363210993538 0.9253972615266867 1.0 17.14299999629526 3.638351695934199 4.5445675186892815 0.8858258488604637 0.997118080262936 0.2451588724646181 0.08186092370058497 0.314713048188908 10.802949476870568 0.023111918359842346 0.0367391973241207 4348.622373285944 -3.638351695934199 0.11129223140247235 VTAPDVDLHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 VTAPDVDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 ;; 149.49 3.4333000000000005e-05 928830000.0 2191340.0 2247510.0 2099870.0 1905970.0 1979080.0 2849450.0 2522830.0 2250240.0 3097740.0 2656250.0 False True 2179542.0689207637 2322317.0117015154 2395513.443602764 2147265.606576493 2231104.107073812 2652474.2283838047 2400791.0747534987 2418164.3352871947 2334343.4845893537 2486725.85086996 0.8764705880860446 0.9338854184063242 0.9633202802651984 0.8634910864119943 0.897205498665355 1.0666532571155196 0.9654426015290757 0.9724290011467167 0.9387216864990177 1.0 21.245816035708398 2.8018240365175435 24.99996887609992 0.9838325609586238 0.9091007931658918 0.5017033519128418 0.04057634842249242 201.65223824432974 79686.89647184918 0.012506763462042441 0.01326542486205326 633.6129377229424 -2.8018240365175435 -0.07473176779273205 VTAVDWHFEEAVDGECPPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTAVDWHFEEAVDGECPPQR 20 0 F8VPD4;P27708;H7C3Z5 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 197.21 1.6765999999999997e-21 57667000.0 77946.0 91515.0 76963.0 79916.0 97151.0 93117.0 82611.0 75447.0 91282.0 89137.0 False True 77526.34739661476 94561.02145301421 87798.72142561176 90033.35740602788 109522.603990909 86680.04096384047 78614.79032533354 81077.2382521032 68786.77421613345 83448.20034597491 0.9290355822557198 1.1331702908027461 1.0521343906950618 1.0789131105614143 1.3124621446218137 1.0387287036085429 0.9420789184116358 0.971587618617996 0.824305065069643 1.0 16.34859331613632 2.3598952823691612 4.262129990441816 0.9369189439934308 1.1052085498653788 0.386017934606229 0.09846299569092473 0.22731015582494457 7.352221789955712 0.0353570313455307 0.0290451474245254 229.03153424721486 -2.3598952823691612 0.16828960587194797 VTCPNHPDAILVEDYR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTCPNHPDAILVEDYR 16 0 B1APE1;B1APE2;Q00403 B1APE1 GTF2B Transcription initiation factor IIB 0 ;; 180.1 2.5206e-09 896730000.0 626020.0 679410.0 580280.0 756220.0 655700.0 749480.0 700800.0 608310.0 796510.0 724900.0 False True 622649.5778773606 702023.7511379815 661978.3801158221 851957.374463016 739199.5083616116 697670.2116861495 666899.6266840216 653705.1811355904 600220.783187183 678636.2613818868 0.9175011907107319 1.0344624817254409 0.975453888608686 1.2553961863579182 1.0892425743009986 1.0280473522966551 0.9827055591253461 0.963262970658936 0.8844513877949453 1.0 19.372278993666598 2.1588812137984217 2.144413325886731 0.9469952910552201 1.0593697859533302 0.22452034320101077 0.08622407794324292 0.4825807743051698 4.404097242292039 0.04470924618188898 0.027689925526603376 144.17209647963608 -2.1588812137984217 0.11237449489811013 VTDALPEPEPPGAMAAS(ph)EDEEEEEEALEAMQSR ddPTM_BT-474_Trastuzumab_2h_R1 7 VTDALPEPEPPGAMAASEDEEEEEEALEAMQSR 33 0 Q9Y3E7-2;Q9Y3E7-4;Q9Y3E7;Q9Y3E7-3 Q9Y3E7-2 CHMP3 Charged multivesicular body protein 3 1 VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR 289.93 1.1689999999999993e-89 813753000.0 689736.0 767374.0 714186.0 741528.0 731360.0 766055.0 790971.0 704895.0 797400.0 747683.0 True False 686022.5380128729 792915.5797026206 814737.1809840058 835405.3687694207 824494.3608896579 713099.4209495018 752708.7109273501 757497.8442842829 600891.4546125716 699965.230816378 0.980080878035551 1.1327928085482668 1.1639680731481017 1.1934955223348411 1.177907593964403 1.0187640607774264 1.0753515714622806 1.0821935303855077 0.8584590036161432 1.0 19.41692373567357 1.3591362237125688 5.356615739821982 0.9312654518439194 1.1088632578378665 0.48348772666849826 0.07193227693177652 0.17127611644535443 6.73591114560848 0.05220571975210478 0.018486579500632688 22.863158320345875 -1.3591362237125688 0.17759780599394714 VTDHLEALIDPFDLDVFTPHLNSNLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTDHLEALIDPFDLDVFTPHLNSNLHR 27 0 A0A087WVI0;E9PBL8;Q8WTW3;J3QKY9;J3QLT5 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 0 ; 129.78 1.7717e-05 283410000.0 146484.0 215004.0 204955.0 244240.0 217799.0 221530.0 224240.0 111443.0 238830.0 192291.0 False True 145695.3464199022 222160.27816733724 233810.88249920428 275160.7589575087 245534.41165418772 206216.15252552755 213392.65452001273 119759.44255608745 179973.54665803938 180018.82375139225 0.8093339539931051 1.2340947104184101 1.298813521979787 1.5285110369208301 1.3639374290839337 1.1455254968797821 1.1853907834366815 0.6652606658594571 0.9997484868948183 1.0 17.457788244952297 1.8849511276504896 6.456071069457331 0.8617295563106252 1.2458669361451526 0.3844082930433722 0.19352261630760445 0.22743681708247984 11.26337455017195 0.08730081962069015 0.05334700622468274 76.72751409268133 -1.8849511276504896 0.38413737983452745 VTDKLTPIHDR ddPTM_BT-474_Trastuzumab_2h_R1 4 VTDKLTPIHDR 11 1 P28072;A0A087X2I4;I3L3X7 P28072 PSMB6 Proteasome subunit beta type-6;Proteasome subunit beta type 0 ;;; 204.64 1.9542e-08 2171930000.0 2827750.0 4015480.0 3653000.0 4232770.0 4059520.0 4279310.0 4585320.0 3850980.0 5713690.0 4716060.0 False True 2812525.708192561 4149132.824391077 4167310.647554796 4768638.2480043145 4576475.809339835 3983491.3721122006 4363510.553976566 4138359.682480214 4305627.659023462 4415077.013177903 0.6370275534940553 0.939764541367444 0.9438817567884804 1.0800804230075984 1.0365562810524476 0.9022473130644092 0.9883203715252475 0.9373244611879347 0.9752100917316363 1.0 22.074007172670353 4.791710290225474 2.5907362594686534 0.9808842212785303 0.5364071604080642 0.8225562430922168 0.04788022768262263 0.25481044087140736 1.9487904310181905 0.012451000357746354 0.26060446749667276 61902.79952464287 -4.791710290225474 -0.444477060870466 VTEFGGELHEDGGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTEFGGELHEDGGK 14 0 C9JUJ0;Q9UFW8 C9JUJ0 CGGBP1 CGG triplet repeat-binding protein 1 0 ; 206.2 1.1177e-08 626340000.0 587120.0 588420.0 497450.0 475480.0 491490.0 666380.0 628290.0 540610.0 846230.0 632140.0 False True 583959.0111551641 608005.2039925986 567486.6360870887 535675.7192479372 554078.338210536 620314.71908979 597897.2123991218 580953.0633619566 637687.9554010493 591796.2839977178 0.9867568062617577 1.0273893575089486 0.9589222700987375 0.9051691160162861 0.9362653216874083 1.048189615013166 1.0103091698382944 0.9816774438620791 1.0775464000776127 1.0 19.17474111203844 2.7407573454636553 24.999855213866265 1.017934736095 0.9630549643975975 0.37674664892219656 0.03866462500819965 262.8694656007223 2991592.806837497 0.01309816146724601 0.013301708575840046 550.5000280842041 -2.7407573454636553 -0.054879771697402435 VTEGGEPYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTEGGEPYR 9 0 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ; 95.741 0.018238 331510000.0 318240.0 372410.0 347200.0 379230.0 368290.0 345970.0 383820.0 327370.0 408400.0 364990.0 False True 316526.6311997882 384805.44172340084 396082.7420835006 427240.4791166724 415189.5484741468 322053.9082257793 365253.16026521346 351800.0117511765 307755.2922796272 341696.02571633947 0.926339809004844 1.126163059452289 1.1591669562241573 1.2503524974310005 1.215084511456444 0.9425158151916401 1.0689417867810673 1.0295701011261538 0.900669803327217 1.0 18.382353942242997 2.734924090260033 24.992373972730356 1.0001350244849554 1.1426112789773641 0.3903031898770798 0.09110030159209258 362.4447779258113 2490928.306398113 0.03025335855431897 0.029578394271863644 543.1553858061246 -2.734924090260033 0.14247625449240875 VTEGLTDVILYHQPDDK ddPTM_BT-474_Trastuzumab_2h_R1 7 VTEGLTDVILYHQPDDK 17 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ;;;;;; 256.08 4.3707e-27 15770320000.0 10939760.0 9935960.0 9298490.0 8796630.0 8754580.0 11790180.0 11657530.0 11150280.0 16145980.0 11445670.0 False True 10880861.547681602 10266672.422185343 10607636.568076061 9910282.456061216 9869423.870538974 10975152.607698394 11093610.737810781 11982370.513574589 12167019.574047524 10715197.541468909 1.0154606581513366 0.958141217877904 0.9899618301037777 0.9248809849475393 0.9210678414787311 1.0242604081934497 1.035315559501108 1.1182594130627634 1.1354918588257394 1.0 23.353155111470098 2.2467582184012773 2.0616646909161296 1.0933974212464153 0.9625029941348632 0.5725606116713884 0.044647212636629484 0.20352092921187356 1.7536130400755936 0.02064434166610849 0.013764590731285527 176.50549009657865 -2.2467582184012773 -0.13089442711155208 VTEGLTDVILYHQPDDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTEGLTDVILYHQPDDKK 18 1 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 211.13 2.1808999999999999e-16 385450000.0 299060.0 203370.0 191850.0 202380.0 206620.0 317630.0 279090.0 260190.0 449560.0 287180.0 False True 297449.89418868953 210139.0475102387 218860.81240990624 228001.2872495109 232931.8322673116 295672.9857205947 265589.35047266516 279606.6990180489 338771.9617953697 268851.9265328321 1.1063707001272505 0.781616297938548 0.8140570730973693 0.8480552480685589 0.8663945067132188 1.0997614543204222 0.987864784521942 1.0400025866428129 1.2600689389294706 1.0 18.036452284117534 2.7431106952811652 24.459452207674456 1.0691609437217857 0.8718449943395588 0.44432285739685384 0.1080293470352269 265.93926774457736 1429587.4245504995 0.032882754149422974 0.03380133350330991 553.4911680028375 -2.7431106952811652 -0.19731594938222696 VTEGLVDVILYHQPDDK ddPTM_BT-474_Trastuzumab_2h_R1 6 VTEGLVDVILYHQPDDK 17 0 O43390;O43390-3;B4DT28 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ;;;;; 223.06 3.163e-15 3921410000.0 4853070.0 4684030.0 4557980.0 4134310.0 4055380.0 5679730.0 5409620.0 5121590.0 7809370.0 5490980.0 False True 4826941.6103467615 4839935.106994072 5199703.965327625 4657713.222099644 4571808.604879542 5287103.633746284 5147936.013844776 5503789.052707064 5884855.403696748 5140540.955335503 0.9389948747197027 0.9415225263346215 1.0115091019614804 0.906074528453135 0.8893633266620201 1.0285111391357868 1.0014385759346196 1.0706633991495653 1.1447930198063496 1.0 22.293488756080816 2.2024648333248296 1.5765275753255472 1.0760231970227532 0.9425309379409317 0.560452727879636 0.0490154413487661 0.27955320293675767 1.360643765074431 0.02772013224515091 0.016197045361845533 159.39138094921213 -2.2024648333248296 -0.1334922590818215 VTEGQQER ddPTM_BT-474_Trastuzumab_2h_R1 4 VTEGQQER 8 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 ;;; 153.73 0.0010151 2173140000.0 447101.0 522601.0 492963.0 505836.0 481988.0 413633.0 519288.0 472850.0 583423.0 530140.0 False True 444693.8578935907 539995.4583660241 562367.9054887919 569874.7857354671 543366.3148333037 385039.52429734846 494168.05556719843 508136.4680836486 439646.2191176714 496306.011324311 0.896007398151391 1.0880292522049753 1.133107181168742 1.1482326885681877 1.0948211434784358 0.7758107206276502 0.9956922630225498 1.0238370208891283 0.8858369817938488 1.0 18.920870403291573 VTEHGT(ph)PKPFR ddPTM_BT-474_Trastuzumab_2h_R1 6 VTEHGTPKPFR 11 1 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 VT(0.004)EHGT(0.996)PKPFR;VTEHGT(1)PKPFR;VTEHGT(1)PKPFR;VT(0.005)EHGT(0.995)PKPFR;VT(0.001)EHGT(0.999)PKPFR;VTEHGT(1)PKPFR 130.2 0.0003359 2844650000.0 2365930.0 2123820.0 2028590.0 2043380.0 2152040.0 2587530.0 2187280.0 2205620.0 3239280.0 2305660.0 True False 2353192.0957595324 2194510.0648236983 2314197.8391796313 2302071.6984875295 2426089.537859574 2408660.141490448 2081472.9101789796 2370214.564311421 2441002.8481281814 2158510.80482516 1.090192409738779 1.0166778224681874 1.0721270581580813 1.0665092309667628 1.1239645094369068 1.115889777390088 0.9643097016359755 1.0980786193022596 1.1308735831535035 1.0 21.041604883818543 5.0961416219617 19.928212192434415 1.0678420204304415 2.9322352762859127 0.017342294632932576 0.05320239125298722 2990.2096330807585 610280.9638078997 0.012017169296274628 3885.4952200586404 124779.03481180714 -5.0961416219617 1.8643932558554712 VTEKIPVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTEKIPVR 8 1 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ; 102.07 0.0045933 1567450000.0 1516090.0 2121390.0 2214520.0 2305300.0 2159200.0 2147280.0 2515300.0 2009740.0 3320100.0 2440400.0 False True 1507927.539893434 2191999.1837426643 2526305.1670471006 2597150.7436322663 2434161.3214189317 1998843.5877534216 2393625.3296208903 2159717.0040529356 2501905.8420607015 2284651.5826684446 0.6600251659083147 0.9594457204640527 1.1057726203031832 1.1367819773196342 1.0654409363268693 0.8749008395489334 1.0476981907346965 0.9453156973416547 1.095092950295076 1.0 21.12354273535888 4.712274573950959 3.453445340386004 1.0277889851702944 0.6242885583993478 0.690901249414724 0.07462503250267331 0.15835000973189567 3.287610755856043 0.018983203269062724 0.16094187952301064 51555.44905231088 -4.712274573950959 -0.40350042677094655 VTELEDKFDLLVDANDVILER ddPTM_BT-474_Trastuzumab_2h_R1 1 VTELEDKFDLLVDANDVILER 21 1 Q01780;Q01780-2;K7EJ37 Q01780 EXOSC10 Exosome component 10 0 127.35 1.8206e-05 86821000.0 247560.0 233850.0 247060.0 230620.0 218910.0 323510.0 353190.0 285710.0 430910.0 322890.0 False True 246227.1644665015 241633.5558846897 281843.9005159838 259816.46835399893 246786.8909187749 301146.5151606258 336104.85038317577 307031.13100598304 324718.00439817365 302282.8837599633 0.8145587385027909 0.7993623485363002 0.9323845829782089 0.8595143235444118 0.816410402895135 0.9962407113985327 1.1118884609095823 1.0157079593358327 1.0742189579480974 1.0 18.205539765629624 2.610705738458882 4.191246450352963 1.0504725150510026 0.8480663345488465 0.8268173605969333 0.04507885152897814 0.09220601877415173 2.704803471447236 0.015045673551906112 0.014060166269770021 408.0428182420896 -2.610705738458882 -0.20240618050215609 VTEQEWR ddPTM_BT-474_Trastuzumab_2h_R1 4 VTEQEWR 7 0 P09497-2;P09497 P09497-2 CLTB Clathrin light chain B 0 ;;; 139.14 0.0063223 2925130000.0 3242420.0 3492750.0 3266170.0 3312560.0 2990140.0 3376260.0 3420930.0 3164100.0 3995510.0 3573410.0 False True 3224963.1709867264 3609004.0723380405 3726018.345941433 3731929.756355568 3370916.6050516875 3142867.093061156 3255446.5466783294 3400221.208974242 3010870.097591019 3345351.91444978 0.9640131302948873 1.0788114866927607 1.1137896523972315 1.1155567042845385 1.0076418539082495 0.9394727889421681 0.9731252884388286 1.016401650985495 0.9000159548494693 1.0 21.67372655254563 3.0426638076251815 6.08970748744926 0.9716228451191928 1.0715927365033424 0.4858758578123935 0.049330760915797946 0.16600722034751644 15.433340657325047 0.01465318768554685 0.017435561761483916 1103.2242706130878 -3.0426638076251815 0.09996989138414958 VTFEDATDFFGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTFEDATDFFGR 12 0 Q86WQ0;Q86WQ0-2 Q86WQ0 NR2C2AP Nuclear receptor 2C2-associated protein 0 146.11 0.00014996 56541000.0 69500.0 69675.0 69158.0 70056.0 77132.0 74112.0 73359.0 73804.0 97030.0 68850.0 False True 69125.81972217587 71994.09025557312 78894.84526788794 78925.08241699642 86954.30300281827 68988.8118808826 69810.34491140574 79311.62924911833 73118.25663538743 64455.934054549485 1.0724508260740466 1.1169505385593208 1.224012132088858 1.224481245593332 1.3490503904454827 1.0703252212976528 1.083070875248271 1.230478316891605 1.1343913901473675 1.0 15.976025564156213 VTFFEPGS(ph)GDENGTSNKEDEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 VTFFEPGSGDENGTSNKEDEFR 22 1 O95793-2;O95793-3;O95793;Q5JW30 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 1 VTFFEPGS(1)GDENGTSNKEDEFR;VTFFEPGS(1)GDENGTSNKEDEFR;VTFFEPGS(1)GDENGTSNKEDEFR;VTFFEPGS(1)GDENGTSNKEDEFR;VTFFEPGS(1)GDENGTSNKEDEFR 237.33 9.758499999999999e-31 1510850000.0 1255760.0 1035820.0 941540.0 894920.0 893570.0 1260310.0 1200820.0 1086470.0 1730920.0 1356360.0 True False 1248999.1276880533 1070296.6425335873 1074100.6479876123 1008216.7802417844 1007360.8428956621 1173187.7361506254 1142731.7490221288 1167547.9083828714 1304357.9591396975 1269795.9435617826 0.983621922893064 0.8428886924393545 0.8458844536664338 0.7939990557961087 0.7933249810753144 0.9239183209703987 0.8999333749773698 0.919476798065597 1.0272185588189613 1.0 20.276165243593606 1.5822055540692788 1.1908989016532914 1.0154878535089051 0.8546909761905158 0.5143176331358693 0.05524646961527997 0.3569604538487446 0.9668087386874725 0.049662791060017995 0.01789634929351717 38.21250900421698 -1.5822055540692788 -0.16079687731838932 VTFFEPGSGDENGTSNKEDEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 VTFFEPGSGDENGTSNKEDEFR 22 1 O95793-2;O95793-3;O95793;Q5JW30 O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 0 ;;;; 278.36 1.3974000000000001e-45 2062490000.0 1416570.0 1287140.0 1167592.0 1172090.0 1257650.0 1440680.0 1526910.0 1404620.0 1922830.0 1538930.0 False True 1408943.3445157234 1329981.676807439 1331978.8047084063 1320476.4738229064 1417804.2728244339 1341089.182595934 1453047.5299373562 1509439.8769158379 1448974.3111019486 1440714.169855741 0.9779478636326601 0.9231405539244542 0.9245267608090351 0.9165429905885675 0.9840982357842699 0.9308502759643278 1.008560587755481 1.0477025273284972 1.0057333657286334 1.0 20.45835271008697 2.16186460394106 4.8979934453089555 1.0240367708816336 0.94179521804619 0.6746133413778679 0.024588559496843285 0.10936005133381692 4.764701476488588 0.009349608199858818 0.006861391920104444 145.16589764563233 -2.16186460394106 -0.08224155283544354 VTFQIGSFAS(ph)PESDFESR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTFQIGSFASPESDFESR 18 0 Q9P278;Q9P278-2 Q9P278 FNIP2 Folliculin-interacting protein 2 1 VTFQIGS(0.344)FAS(0.65)PES(0.006)DFESR 124.2 3.3926e-05 36907000.0 32588.0 49085.0 35726.0 40757.0 43972.0 42256.0 36941.0 40735.0 36119.0 38358.0 True False 32412.549828867184 50718.76455249093 40755.91026404126 45916.83202109064 49571.57355753669 39334.942179924634 35154.022701675865 43774.852548138755 27217.956419803737 35909.959600063994 0.902606134617022 1.4123871237215357 1.1349472602572528 1.2786656552242073 1.3804408055487858 1.0953769544161374 0.978949101953688 1.2190170369353672 0.75795007075851 1.0 15.132096409471538 1.248401416792714 24.9981343837109 0.8789750197348295 1.1814355655938118 0.3490753041706993 0.16168358127731572 182.77713290002885 464308.40007693536 0.10670191791975553 0.03790695424604198 17.717458198748943 -1.248401416792714 0.3024605458589823 VTGEADVEFATHEDAVAAMAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTGEADVEFATHEDAVAAMAK 21 0 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 0 140.35 1.6604e-07 232390000.0 361770.0 353460.0 333930.0 325990.0 327710.0 439410.0 425980.0 378910.0 554990.0 410270.0 False True 359822.27051642555 365224.70242891833 380944.44142840756 367260.30057549267 369441.9260106511 409034.6209598801 405373.7199983729 407186.18826599343 418220.15098499064 384086.21735018125 0.93682682237037 0.9508924973892869 0.9918201284507191 0.956192344284648 0.9618723852145453 1.0649552170390764 1.055423760829156 1.0601426707659007 1.0888704985831048 1.0 18.551070669190185 2.7415790945997434 24.643084381092827 1.0578704889419994 0.960650967400702 0.7862702535932107 0.02455003558387891 91.318284702075 745531.652795181 0.007285781218183612 0.007438972751672778 551.5426413098545 -2.7415790945997434 -0.09721952154129743 VTGEADVEFATHEDAVAAMSK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTGEADVEFATHEDAVAAMSK 21 0 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ; 127.17 7.8856e-06 20082000.0 25882.0 23539.0 22756.0 23614.0 22539.0 27180.0 27335.0 25457.0 33368.0 29529.0 False True 25742.65418776054 24322.481385374 25959.847001302205 26603.529978802035 25409.20805088056 25301.110574837927 26012.701620159438 27356.730608026715 25144.903508292333 27644.433938951202 0.9312056902524946 0.8798328603539772 0.9390623464611658 0.9623467073897097 0.9191437273410329 0.91523344738083 0.9409742907959261 0.9895927212125291 0.9095828680674479 1.0 14.754701410207256 -4.999999999999998 0.06058879420493956 1.2506892121503292 0.829854326955769 0.3655471811255383 0.027838158799424292 401.0216266177057 1.774157779761174 14.763135409906708 2.4235567655228745 1.0000000000000041e-05 4.999999999999998 -0.42083488519456025 VTGEADVEFATHEEAVAAMSK ddPTM_BT-474_Trastuzumab_2h_R1 4 VTGEADVEFATHEEAVAAMSK 21 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ;;; 228.63 1.6023e-25 622727000.0 726602.0 679193.0 585520.0 577013.0 568227.0 700916.0 653751.0 645357.0 867024.0 743646.0 False True 722690.055565072 701799.528424162 667956.1265689257 650062.7866375238 640587.340304703 652463.3266987887 622126.5665586562 693516.816396445 653357.5527263742 696185.8756126278 1.0380705510997634 1.0080634396763568 0.959450844907101 0.9337488871998204 0.9201383750295143 0.937197018144954 0.8936213565252223 0.996166168677533 0.9384814826233502 1.0 19.409113019049506 4.312699903065122 2.339068849212489 0.9440290761573772 1.0361420741727574 0.5141709658239602 0.03031685971727221 0.24518589126039322 2.5284497274636726 0.007822688930054368 0.031962914974535094 20544.704689054717 -4.312699903065122 0.0921129980153802 VTGLTEGLVDVILYHQPDDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTGLTEGLVDVILYHQPDDK 20 0 O43390-2;O43390-4 O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ; 215.75 1.1734e-24 690020000.0 739420.0 733040.0 673160.0 643700.0 662550.0 868500.0 859170.0 797070.0 1202290.0 875970.0 False True 735439.0448772844 757438.793267963 767935.0767883899 725192.3539999529 746921.8152584817 808462.6392290927 817608.6647518717 856551.4108394494 906001.7393606097 820064.8446443527 0.8968059656260854 0.9236328056428885 0.9364321392431223 0.8843109892297063 0.9108082368564503 0.9858520878061886 0.997004895517078 1.044492294034285 1.1047928042245565 1.0 19.645378466299334 2.3151400225495893 1.402996721433905 1.053386807492178 0.910210790254998 0.8093591933930256 0.029307196955948377 0.16817576153253394 0.6579333422140401 0.016264397108500413 0.01029053607060572 206.60461703084306 -2.3151400225495893 -0.14317601723718 VTGPPPGT(ph)PQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTGPPPGTPQPR 12 0 F5GYK2;Q9NRL3;Q9NRL3-3;R4GN16;M0QZM0 F5GYK2 STRN4 Striatin-4 1 VTGPPPGT(1)PQPR;VTGPPPGT(1)PQPR 134.21 0.00059273 341680000.0 235640.0 252100.0 216907.0 217990.0 214273.0 260470.0 232530.0 210580.0 293100.0 187797.0 True False 234371.34042206517 260490.9961023319 247445.6202105579 245587.51164898183 241559.3964544269 242464.3219804282 221281.63554913746 226294.54890357342 220869.43233878224 175811.6346788993 1.3330820844144857 1.4816482229864376 1.407447355019992 1.3968786087309895 1.3739670693330885 1.3791142003955696 1.2586290773832125 1.2871420558535596 1.2562845043911688 1.0 17.423671021244285 0.552306698967014 0.3479570086702776 0.9464196528487637 1.434320707740017 0.8896971792861652 0.04168118358852446 0.7167183280498877 0.1842293498379428 0.10993654232291317 0.03908925288955985 3.5670294828943954 -0.552306698967014 0.48790105489125335 VTGQHQGYGFVEFLSEEDADYAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTGQHQGYGFVEFLSEEDADYAIK 24 0 Q5SZ64;Q15427 Q5SZ64 SF3B4 Splicing factor 3B subunit 4 0 ; 171.72 6.3351e-12 186503000.0 169600.0 160633.0 139861.0 140362.0 130130.0 177728.0 187513.0 169207.0 240250.0 209312.0 False True 168686.89244433143 165979.57230030117 159552.2131063951 158131.81480835978 146701.28415906156 165442.0816867106 178442.27982077768 181834.08555573644 181043.60668506476 195953.52895898087 0.8608515158695754 0.847035382225986 0.8142349563900648 0.8069863076641077 0.7486534431833104 0.8442924328315757 0.9106357041323362 0.927944939403464 0.9239109274881331 1.0 17.58015202934058 2.1982936465014187 2.5208328174603993 0.9399840246981075 0.8151968332526625 0.7537954324197726 0.03433003399035848 0.15248710868442983 1.9686781427777804 0.016002683697293844 0.010851791122650126 157.86783260407984 -2.1982936465014187 -0.12478719144544503 VTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTGTEGSSSTLVDYTSTSSTGGSPVRK 27 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 VTGTEGSSSTLVDYTS(0.001)T(0.019)S(0.058)S(0.172)T(0.076)GGS(0.674)PVRK;VTGTEGSSSTLVDYTSTS(0.032)S(0.077)T(0.128)GGS(0.763)PVRK 322.61 7.960299999999998e-83 1896370000.0 531280.0 439098.0 497660.0 381421.0 414165.0 588450.0 557610.0 552030.0 734330.0 625260.0 True False 528419.6475107577 453713.11148965324 567726.2022617364 429708.8594920235 466906.45780171937 547771.8365623018 530636.2740229415 593225.2817515414 553364.2110178705 585355.3714879816 0.9027330631091801 0.7751071120032743 0.9698829632648084 0.7340991138420708 0.7976461488938532 0.9357936447561045 0.9065198678779637 1.0134446707878573 0.9453474555315189 1.0 19.15895323079616 2.345451386850966 1.8508270927892796 0.9798440540317844 0.8364353857268357 0.4545633790185075 0.0679697813820848 0.3006477982796402 2.0988939369760464 0.030654912737396716 0.0217362720010392 221.53961000497347 -2.345451386850966 -0.1434086683049487 VTGVYELSLCHVADAGS(ph)PGMQR ddPTM_BT-474_Trastuzumab_2h_R1 17 VTGVYELSLCHVADAGSPGMQR 22 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 1 VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR;VTGVYELSLCHVADAGS(1)PGMQR 294.77 1.0928e-55 23669705000.0 5987811.0 7573987.0 7188433.0 8122526.0 8087006.0 7718555.0 7839995.0 7583314.0 8055903.0 8124623.0 True False 5955573.29088435 7826082.578723165 8200501.883420278 9150836.958778638 9116838.278660063 7184989.460374096 7460744.490160668 8149219.397968246 6070633.6492197 7606102.604300288 0.7829993362852123 1.0289215102486926 1.0781476808877037 1.203091443126865 1.198621521816659 0.9446348326029542 0.9808892777679021 1.0714053993119808 0.798126710227065 1.0 22.858725969996172 VTHAVVTVPAYFNDAQR ddPTM_BT-474_Trastuzumab_2h_R1 4 VTHAVVTVPAYFNDAQR 17 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;; 157.42 2.6391e-08 10654630000.0 3320650.0 4506130.0 4015570.0 3927530.0 3951790.0 3942010.0 3949720.0 3605620.0 5518290.0 3924950.0 False True 3302771.989358895 4656113.81303689 4580927.352039869 4424754.8953012815 4455027.032405574 3669508.12719341 3758656.954204359 3874689.6733673764 4158381.370797611 3674456.3306812467 0.8988464393442822 1.2671572047703838 1.2466952767378683 1.204193082485465 1.2124316174903647 0.9986533508517927 1.022915124292007 1.0544933249074717 1.131699766323429 1.0 21.809099375177126 2.741462951980895 24.91603170866794 1.0441050378578767 1.1781120257423627 0.2654889729206844 0.10233323603308869 311.1638908476519 2671291.7931160443 0.03127788446132165 0.031869740020140085 551.3951629402379 -2.741462951980895 0.13400698788448606 VTHETSAHEGQTEAPSIDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTHETSAHEGQTEAPSIDEK 20 0 A0A087WTB8;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 0 ; 103.1 0.00016782 884190000.0 223185.0 258378.0 321278.0 265583.0 265626.0 353220.0 318361.0 183779.0 403510.0 286091.0 False True 221983.3967581846 266977.95553720056 366511.149801563 299205.78056916164 299451.8966113495 328802.7327904433 302960.6621728767 197493.52219085273 304070.36725698394 267832.4274451719 0.8288144899990756 0.9968096771697061 1.3684345592416798 1.1171379934209504 1.118056911434484 1.2276434781511012 1.1311575116679846 0.7373771879481684 1.135300792952826 1.0 18.030971118004693 1.800804556463562 24.999999999921204 0.9289772571500662 1.1227788561967673 0.15485378558922114 0.1606471806673724 263.5569009862868 105880.46119429565 0.06932850514942247 0.04260309610539467 63.21273140258985 -1.800804556463562 0.19380159904670113 VTHTGQVYDDKDYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTHTGQVYDDKDYR 14 1 D6RBT3;O75380 D6RBT3 NDUFS6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial 0 ; 212.24 1.6321e-09 469730000.0 424120.0 378230.0 398720.0 319400.0 410980.0 834620.0 444040.0 360600.0 630380.0 504330.0 False True 421836.5850441621 390819.15690513665 454856.3102636324 359836.00725118036 463315.8669306929 776924.68388415 422560.08880247356 387509.80308969755 475031.29565923434 472143.2276213639 0.8934504624144577 0.8277555073151548 0.9633862854608289 0.7621331540939765 0.9813036380186098 1.6455275400184415 0.894982844361259 0.820746291420835 1.0061169320428895 1.0 18.848865051045244 3.0074026740691533 24.73947278854346 1.0561645789891543 0.8671721222707617 0.1766917966879865 0.21376244271651498 339.66310991499125 1135129.3133938876 0.06722375511840353 0.08018576822497142 1017.1913867877436 -3.0074026740691533 -0.1889924567183926 VTHVEPWEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTHVEPWEK 9 0 Q5VTL8;Q5VTL8-2 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 0 ; 100.48 0.004633699999999999 655850000.0 1092680.0 1661770.0 1466080.0 1708410.0 1648170.0 1578730.0 1485780.0 1248040.0 1378530.0 1450800.0 False True 1086797.1322881607 1717081.0098888204 1672491.3206042002 1924694.5308327759 1858054.6800310488 1469596.11103068 1413907.1451692148 1341175.0822187082 1038809.7528556176 1358208.7019076282 0.8001694664168584 1.2642247155957325 1.231394938241197 1.4170830507340353 1.3680185360477946 1.0820105253092593 1.0410087515882922 0.9874587611867043 0.7648380925527799 1.0 20.373273749991526 2.1019913276634705 1.6311067359423568 0.909398294482911 1.2258341892073024 0.36406878527809583 0.16824540871420998 0.41017442728298115 2.081582472122464 0.10309881817166966 0.0552322597610598 126.47110924652209 -2.1019913276634705 0.3164358947243914 VTIAQGGVLPNIQAVLLPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTIAQGGVLPNIQAVLLPK 19 0 A0A0U1RR32;A0A0U1RRH7;P20671;Q7L7L0;P04908;Q99878;Q96KK5;Q6FI13;P0C0S8;Q16777;Q9BTM1;H0YFX9 A0A0U1RR32;Q7L7L0;Q99878 HIST1H2AD;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AG;HIST2H2AC;H2AFJ Histone H2A type 1-D;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-C;Histone H2A.J;Histone H2A 0 ; 218.28 7.913099999999998e-19 865100000.0 928490.0 1114750.0 1023920.0 993630.0 988920.0 1142580.0 1173260.0 1245380.0 1566040.0 1146230.0 False True 923491.1130049371 1151853.7798693958 1168079.0359278168 1119423.4561208219 1114853.100211934 1063596.1339440148 1116504.931511553 1338316.5795115011 1180110.4258608893 1073076.6200631247 0.8606012802241576 1.0734124277180104 1.088532742293 1.0431906121064969 1.0389314978704425 0.9911651358888499 1.0404708393011801 1.2471770929393406 1.0997447934253457 1.0 20.03332166073886 1.9644362080383881 21.97082981551447 1.143284765870703 1.0234668399847424 0.20253019221462776 0.08254984907740945 164.80539155592413 101813.33035341385 0.03275785080838967 0.021156031104194867 92.13745413871224 -1.9644362080383881 -0.11981792588596063 VTIPPPSSSVAISNHVT(ph)PPPIPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTIPPPSSSVAISNHVTPPPIPK 23 0 F5H2U7;A0A1W2PNT6;F5GYH1;A0A1W2PRM0;A0A1W2PRL5;A0A1W2PR09;Q8NC96;A0A1W2PRW5 F5H2U7 NECAP1 Adaptin ear-binding coat-associated protein 1 1 VTIPPPS(0.001)S(0.001)S(0.001)VAIS(0.016)NHVT(0.98)PPPIPK;VTIPPPSSSVAIS(0.006)NHVT(0.993)PPPIPK 103.27 0.0064384 671920000.0 362510.0 435190.0 444650.0 464630.0 465380.0 499220.0 522120.0 478270.0 577460.0 508500.0 True False 360558.2864386469 449675.03607208916 507252.8550329153 523452.1103604122 524643.3844766311 464710.09643747535 496863.0609079071 513960.9360058501 435152.7205675648 476047.09465124784 0.7574004557317842 0.9446019965766647 1.0655518345396664 1.0995805168055763 1.1020829459341304 0.9761851330652948 1.0437266953008273 1.0796430474644068 0.9140959486085252 1.0 18.86074477876611 4.642116935999514 2.5285276883936745 1.042505931303762 0.7263587594629768 0.6887661013050389 0.05654474403874354 0.21357016930816117 1.9879300726648172 0.0139790600612306 0.13100890834367826 43864.87902949752 -4.642116935999514 -0.3161471718407851 VTKNEEPS(ph)EEEIDAPKPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTKNEEPSEEEIDAPKPK 18 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 VT(0.002)KNEEPS(0.998)EEEIDAPKPK 60.278 0.035979000000000004 242960000.0 121360.0 96494.0 76911.0 98404.0 104360.0 114800.0 140490.0 124900.0 204970.0 125690.0 True False 120706.61124436362 99705.74445814532 87739.40027760394 110861.93631041062 117649.62740981836 106864.14621013206 133693.9619760819 134220.67222934903 154457.88995728473 117668.3565913771 1.0258204902405272 0.8473454320806916 0.7456499165896705 0.9421558991887435 0.9998408307713196 0.9081808338773316 1.1361929906130699 1.1406692174299042 1.3126544334571222 1.0 16.844366877000994 2.21719374310156 4.247951038002343 1.160726004421913 0.9048162806703306 0.5629231576496375 0.10160321715004601 0.14796195248248303 6.089481366844679 0.03918780402359386 0.029522130483771013 164.88978172411223 -2.21719374310156 -0.2559097237515824 VTKS(ph)PAPVHR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTKSPAPVHR 10 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 VT(0.113)KS(0.887)PAPVHR;VT(0.044)KS(0.956)PAPVHR;VT(0.057)KS(0.943)PAPVHR 108.66 0.0012849 1480780000.0 2389030.0 1992120.0 1684760.0 1758170.0 1625080.0 2531650.0 2003240.0 2048340.0 3665130.0 2255780.0 True False 2376167.727926185 2058426.5099380289 1921959.563803566 1980754.141730771 1832024.3053962016 2356642.994363078 1906335.6280800498 2201197.532059767 2761907.8217258286 2111814.1891295807 1.1251784082886391 0.9747195186648706 0.9100988021089741 0.9379395933252875 0.8675120731863729 1.1159329293712188 0.9027004543736765 1.0423253823135958 1.3078365681708932 1.0 21.01005147210097 1.4534893866525946 7.151526574829102 1.161992296026377 0.9742220431605038 0.30554274112777124 0.10602225749637857 0.161668300793507 21.26186859251805 0.05920223667240983 0.025010607559031336 28.41118752489739 -1.4534893866525946 -0.18777025286587334 VTLDWAKPK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTLDWAKPK 9 1 P19338;H7BY16 P19338 NCL Nucleolin 0 ; 103.7 0.0030824000000000003 2179400000.0 5260500.0 4869900.0 4635500.0 3678500.0 3706900.0 5313500.0 5349600.0 5073600.0 7734500.0 5488000.0 False True 5232178.0524964975 5031991.677583281 5288138.107511714 4144197.722834894 4178951.742482322 4946190.251633598 5090819.410543446 5452217.795218774 5828436.111990142 5137751.1414868105 1.018379035575935 0.9794152225378273 1.0292709712641674 0.8066170604042934 0.813381502412158 0.962715031425641 0.9908653164291289 1.0612070622091205 1.1344333252979346 1.0 22.29270558108142 1.9549121290680815 2.2068435993486246 1.0737060490792258 0.9297406939767319 0.36627166188054217 0.07676364900092657 0.34857737950510936 3.1292210712170645 0.04759280643873003 0.02445583642832795 90.13887409018803 -1.9549121290680815 -0.14396535510249397 VTLEYRPVIDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTLEYRPVIDK 11 1 P31040;D6RFM5;P31040-2;A0A087X1I3;P31040-3 P31040 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 0 71.085 0.041833 0.0 315320.0 319320.0 301160.0 291240.0 351640.0 630520.0 340800.0 287000.0 508780.0 404090.0 False True 313622.3521553458 329948.37316698354 343560.7102703538 328110.9541384902 396419.2696664291 586933.6364844303 324314.2020175723 308417.39735647076 383397.98630271415 378300.63024114544 0.8290294202138366 0.8721856290766948 0.9081684850785291 0.8673285950629738 1.0478948169177884 1.5515005515858988 0.8572922593621908 0.8152706411297067 1.013474352549504 1.0 18.52917365432666 3.240709963694899 24.533106025755732 1.0332688010540083 0.8721778621456595 0.17588758483464495 0.18760284609752229 100.33605727349845 1145238.6074948292 0.05882419672117396 0.07588271084142853 1740.6440251447962 -3.240709963694899 -0.1610909389083488 VTLILELLQHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTLILELLQHK 11 0 Q5T3Q7;Q9H583 Q5T3Q7 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed 0 82.171 0.015765 0.0 55991.0 78892.0 61862.0 52091.0 55891.0 59965.0 73579.0 64845.0 99692.0 76066.0 False True 55689.55067718492 81517.8725287789 70571.6318858568 58685.71525898942 63008.387558088856 55819.76069242665 70019.7026709241 69684.06317623815 75124.24240435987 71211.40275662107 0.7820313674695452 1.1447306101718318 0.9910158928767234 0.8241055924647258 0.8848075605733028 0.7838598669822813 0.9832653193229484 0.9785520363135817 1.0549468132387687 1.0 16.11982065140505 1.828832731910489 2.755557550617868 1.0153707693282084 0.9122233102552977 0.17780876721838923 0.10355403083261111 0.5249074602444943 7.318427516961701 0.060653806989972435 0.02996007874057228 67.42682839194536 -1.828832731910489 -0.10314745907291067 VTLLEGDHVR ddPTM_BT-474_Trastuzumab_2h_R1 5 VTLLEGDHVR 10 0 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 ;;;; 168.74 4.8456e-06 1692160000.0 1355565.0 1627613.0 1547730.0 1509261.0 1336822.0 1560390.0 1566561.0 1389628.0 1883360.0 1640254.0 False True 1348266.7886574287 1681787.1147921663 1765636.9308896763 1700333.2878519827 1507058.3577352257 1452523.9120629625 1490780.4595858287 1493329.0977480027 1419231.1637310449 1535571.5854278994 0.8780227515617407 1.0952189599962692 1.1498239141991335 1.10729666007604 0.9814315216800992 0.9459174198369952 0.9708309750798174 0.9724907076421804 0.9242364062991988 1.0 20.550344338905646 3.1229805742479555 6.007767552421514 0.9628817435030461 1.0664358225417734 0.2939360947881303 0.06952412738549858 0.24999237173001784 12.215764505720632 0.020491291983431893 0.02465124203326857 1327.3350854374457 -3.1229805742479555 0.10355407903872726 VTLLHHVLEEAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTLLHHVLEEAEK 13 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 149.23 2.5243e-05 315990000.0 360680.0 296960.0 301880.0 261880.0 246530.0 363840.0 365060.0 163540.0 517810.0 321300.0 False True 358738.1389553152 306844.1340838892 344382.08001200185 295033.9811488387 277924.13420220854 338688.59718723467 347400.6531353723 175744.1852392934 390202.66379851534 300794.3589212309 1.1926358600669704 1.0201126616348632 1.1449087052267004 0.9808494487960107 0.9239672419355066 1.1259805483118357 1.1549440434364868 0.5842668920706574 1.2972406304358182 1.0 18.19841798549266 7.9999955915620005 0.37041392301235426 0.9607768094034583 3.814766820553606 0.04139591053541314 0.1825588950843923 159.8686407731251 2.2133366405027286 0.142211196253296 324.662760413161 99998984.92478982 -7.9999955915620005 2.853990011150148 VTLTSEEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTLTSEEEAR 10 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 ; 251.23 2.1674000000000002e-13 1850030000.0 501910.0 580810.0 468920.0 473000.0 450810.0 726510.0 667790.0 438368.0 639420.0 621740.0 False True 499207.7723274429 600141.9097429415 534939.8600742943 532881.751502217 508217.98133978725 676288.0737205844 635486.4464944685 471081.2461476 481843.5087890287 582060.0209016061 0.8576568642425815 1.0310653338006737 0.9190458730453209 0.9155099686743434 0.873136726608644 1.1618871756095186 1.091788516088264 0.8093344830966043 0.8278244364604481 1.0 19.150808403158603 -1.902515507470692 2.46018700067822 1.0315645595277743 0.9450947843341646 0.022997625597942495 0.11066584045997342 24561156.828508694 14800955.176771663 4498786.175566445 0.027765807240336934 0.012516545790647203 1.902515507470692 -0.08646977519360965 VTLVFEHVDQDLR ddPTM_BT-474_Trastuzumab_2h_R1 6 VTLVFEHVDQDLR 13 0 F8W1L8;F8VYH9;F8VTV8;F8VWX7;P11802;F8VXD2;F8VZZ0;F8VZ51 F8W1L8 CDK4 Cyclin-dependent kinase 4 0 ;;;;; 225.13 1.2964e-11 979052000.0 1357870.0 1544430.0 1430120.0 1521460.0 1485380.0 1582200.0 1557360.0 1428710.0 1745990.0 1689750.0 False True 1350559.3787935383 1595835.4189223517 1631468.4651741206 1714076.6800011927 1674534.3384629732 1472826.2380981813 1482024.547107062 1535327.5950423789 1315714.1595673494 1581908.7083322403 0.8537530463546112 1.0088037384943622 1.0313290878170396 1.0835496833494855 1.0585530818832052 0.9310437639925117 0.9368584541578994 0.970553854944657 0.8317257200982653 1.0 20.593234913865192 2.716906387774889 23.7671656097109 0.9356787467081503 1.012869356450178 0.21251193616504616 0.06995756464787443 674.3072839450278 740101.8737860069 0.022945678706604408 0.021655653482873842 521.0823796326185 -2.716906387774889 0.07719060974202774 VTLYNTDQDGSDS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTLYNTDQDGSDSPR 15 0 Q9UPW0-2;Q9UPW0;C9JXI1;C9JVP0 Q9UPW0-2 FOXJ3 Forkhead box protein J3 1 VTLYNTDQDGSDS(1)PR;VTLYNTDQDGSDS(1)PR;VTLYNTDQDGS(0.004)DS(0.996)PR 309.1 4.363299999999998e-56 1155550000.0 897180.0 966110.0 853369.0 902810.0 833920.0 1023630.0 984340.0 939650.0 1051950.0 945163.0 True False 892349.6825660695 998266.3873241713 973515.9375836819 1017105.653432804 940114.7689689117 952868.8674658324 936723.7136560369 1009771.4544460201 792711.0179078202 884841.8881452442 1.00848489941696 1.128186177325625 1.100214570112985 1.1494772874787875 1.0624663926563507 1.0768803785534866 1.058634007053559 1.141188576145108 0.8958787197218436 1.0 19.755060158369492 1.239615753210756 24.999988285963592 0.9479393379909993 1.0935486143641395 0.5992479989584351 0.04664893373280037 16.49773770484149 390975.38438253646 0.03349170139229675 0.010641958189324658 17.36263970450154 -1.239615753210756 0.14560927637314025 VTNDIS(ph)PESS(ph)PGVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTNDISPESSPGVGR 15 0 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 2 VTNDIS(1)PES(0.001)S(0.999)PGVGR;VTNDIS(1)PES(0.008)S(0.992)PGVGR 251.74 1.8332e-24 634230000.0 1028180.0 1090010.0 983100.0 1020470.0 1014870.0 1183920.0 1210220.0 1002070.0 1279350.0 1281390.0 True False 1022644.3931215373 1126290.3239250404 1121511.9347416167 1149661.397368855 1144107.6788942337 1102078.3970479069 1151677.0351106403 1076849.5518083556 964071.3349117074 1199610.5931468273 0.8524802956590514 0.938879941840583 0.9348966582561249 0.9583621584676532 0.9537325574068182 0.9186967865604844 0.9600424018343758 0.897665924225924 0.8036535692659635 1.0 20.194134736400816 -0.21080010330213672 7.979636974431527 0.9999999999999722 0.917889649938203 0.22135266471002946 0.04813246248721726 0.0 0.0 0.046016115981242715 0.010846102551401131 0.615460090976755 0.21080010330213672 -0.08211035006176925 VTNDIS(ph)PESSPGVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTNDISPESSPGVGR 15 0 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 VTNDIS(0.927)PES(0.071)S(0.002)PGVGR;VTNDIS(0.69)PES(0.309)S(0.001)PGVGR 282.41 8.4348e-34 1691790000.0 1487290.0 1685070.0 1560730.0 1569730.0 1510600.0 1749630.0 1756550.0 1561620.0 1874350.0 1819910.0 True False 1479282.5958934515 1741156.5363036739 1780467.2178916512 1768457.6570519551 1702965.9559723237 1628682.1962860047 1671578.9658273654 1678156.0141456835 1412441.5575032278 1703761.7856966595 0.8682449672907651 1.0219483444933142 1.0450212188340797 1.0379723690825955 0.9995328984773476 0.9559330476590334 0.9811107279553551 0.9849710377554302 0.829013521350749 1.0 20.700292206168196 1.426258784652769 21.55758892328658 0.9119998983786726 0.9907948641431191 0.18195841051190875 0.06096840990105385 30.650262109908894 12992.193132372528 0.03590253855030455 0.014400218636942288 26.68448248966715 -1.426258784652769 0.07879496576444656 VTNDISPES(ph)SPGVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTNDISPESSPGVGR 15 0 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 VTNDIS(0.141)PES(0.429)S(0.429)PGVGR 247.79 2.7541e-18 2949100000.0 1998800.0 2490000.0 2147700.0 2074400.0 2176800.0 2455000.0 2468600.0 2132900.0 2373600.0 2384600.0 True False 1988038.6828875544 2572878.1447632173 2450077.491856949 2337018.8273069784 2454002.5770955593 2285291.628448382 2349184.387032218 2292067.828646745 1788658.0846104883 2232412.7864412274 0.8905336391916843 1.1525100377447393 1.0975019972729636 1.0468578398677366 1.099260222840587 1.0236868568072712 1.0523073516243115 1.02672222743385 0.801221931478835 1.0 21.090172384076514 1.395333818720273 6.712828309853552 0.9009461176026456 1.055821004618717 0.3663296354333002 0.07827411998579695 0.2007195509703289 12.644452858384327 0.048657695314863296 0.017890258486100624 24.850424893731457 -1.395333818720273 0.15487488701607144 VTNDISPESS(ph)PGVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTNDISPESSPGVGR 15 0 A0A4W8VX11;A0A5H1ZRS1;Q15154-4;Q15154-2;Q15154-5;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A4W8VX11 PCM1 Pericentriolar material 1 protein 1 VTNDIS(0.195)PES(0.197)S(0.608)PGVGR 252.67 1.2492e-24 3616300000.0 1781500.0 2144700.0 1834500.0 1948400.0 1880400.0 2211000.0 2085800.0 1819500.0 2269200.0 2109700.0 True False 1771908.6019432568 2216085.043001475 2092781.6542401533 2195067.240226049 2119857.7939959955 2058158.7741341665 1984901.8854702262 1955280.3292337898 1709986.0657221593 1975057.139794959 0.8971429566474254 1.1220359139743867 1.0596056246035574 1.1113942963968781 1.0733146658309183 1.042075559569803 1.0049845371442212 0.9899867147321002 0.8657906808203443 1.0 20.913462961401944 1.8080209077875309 1.6774136207526626 0.9373486720907658 1.0583595534272228 0.31350390973107356 0.06625810000403126 0.38411156121764833 2.075461041033588 0.045206641893970174 0.019021839571661366 64.27186583081064 -1.8080209077875309 0.12101088133645699 VTNEFVHINNLK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTNEFVHINNLK 12 0 O00743;O00743-2;O00743-3 O00743 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed 0 ; 194.24 1.7785e-06 1703250000.0 2088840.0 2106360.0 1940770.0 1774100.0 1826920.0 2304860.0 2206460.0 1992750.0 2770300.0 2443900.0 False True 2077593.9175319418 2176468.919278489 2214013.546524754 1998700.8780974287 2059567.4329967943 2145530.4532568404 2099725.100304265 2141459.1239794646 2087596.6851181444 2287928.209671942 0.9080677919653085 0.9512837466130832 0.9676936265592937 0.8735854864886758 0.9001888364723246 0.9377612654920149 0.9177408152178591 0.9359817825256506 0.9124397681243143 1.0 21.12561035344433 -0.8935120074755326 4.64000246438944 1.0000004575043202 0.9239252222199267 0.45110436663801146 0.02553445605442127 3287052.0512018185 708415.9303451953 18.60915533676926 0.006040570312703798 0.12778738781216473 0.8935120074755326 -0.07607523528439353 VTNGAFTGEIS(ph)PGMIK ddPTM_BT-474_Trastuzumab_2h_R1 5 VTNGAFTGEISPGMIK 16 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 VTNGAFTGEIS(1)PGMIK;VTNGAFTGEIS(1)PGMIK;VTNGAFTGEIS(1)PGMIK;VTNGAFTGEIS(1)PGMIK;VTNGAFTGEIS(1)PGMIK 350.04 3.621099999999998e-87 584659000.0 993516.0 947537.0 866858.0 829143.0 865335.0 1044643.0 1061430.0 957825.0 1253740.0 1001050.0 True False 988167.0202460055 979075.1962467873 988904.0715351931 934112.4187860534 975530.2830076186 972429.2882351144 1010084.5758436369 1029302.7652367984 944772.5762552882 937162.1319579766 1.0544248284781486 1.0447233865513146 1.055211299958433 0.996745799827025 1.0409407825404564 1.0376318622728125 1.0778119830058714 1.098318775521068 1.0081207339026934 1.0 19.83793913463425 2.282609549127812 22.29439677291701 1.0598183621270205 1.037575146026181 0.0 0.032220091596140754 108.83798460284743 55084.533331769075 0.011179341418793986 0.009353183771732136 191.69445437097113 -2.282609549127812 -0.022243216100839458 VTNLFCFEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTNLFCFEHR 10 0 O95159;E9PQ47;E9PNY1;E9PJX1;E9PJ47;E9PMQ3;E9PQA5 O95159 ZFPL1 Zinc finger protein-like 1 0 88.18700000000003 0.013663 0.0 195850.0 272370.0 320420.0 186670.0 117450.0 157410.0 210370.0 119170.0 375330.0 179510.0 False True 194795.5653609805 281435.6707988579 365532.350859433 210302.40286029392 132406.5613193096 146528.6172032833 200193.59940855854 128063.07053299865 282834.95066432975 168053.51811375684 1.1591281607631785 1.6746788401558586 2.175094904065032 1.2514013703535707 0.7878833053032694 0.8719163921584602 1.1912490833607292 0.7620374269481921 1.683005234516283 1.0 17.35856121947572 3.488335496702622 23.70685780495668 1.0204767024880463 1.6773235113490195 0.4039587762521156 0.3358268967178935 240.8237948627171 509099.71075304627 0.0888429203543466 0.1290609673244211 3078.474047486787 -3.488335496702622 0.6568468088609731 VTNSTELQHQLDK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTNSTELQHQLDK 13 0 Q15075 Q15075 EEA1 Early endosome antigen 1 0 ; 158.81 4.6627e-05 720270000.0 602550.0 630480.0 583740.0 573620.0 572730.0 710350.0 693130.0 636620.0 896190.0 749410.0 False True 599305.9377495982 651465.1456667916 665925.5180409624 646240.2331854168 645663.7706633308 661245.1764840365 659600.653886267 684127.8170908572 675335.9828307518 701582.012197819 0.8542207857812311 0.9285659186528625 0.9491770120428874 0.9211185890598377 0.920296928139142 0.942505886678279 0.9401618662085726 0.9751216610410468 0.9625902190895014 1.0 19.420252233556862 7.99999999986075 0.12015502960015506 1.0215744719602262 0.5984208606761977 0.7186530240004568 0.019606955804326864 52.95765786978125 0.43684354557211996 0.13527115731860873 3.7547272793242485 99999999.96793641 -7.99999999986075 -0.4231536112840285 VTPDTDWAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTPDTDWAR 9 0 P53396;P53396-2;P53396-3;K7ESG8 P53396 ACLY ATP-citrate synthase 0 ; 128.61 0.00095986 974920000.0 558250.0 660360.0 594960.0 633750.0 531660.0 566410.0 606320.0 516700.0 713430.0 679400.0 False True 555244.4440274055 682339.6834039501 678725.196514974 713982.6850201486 599363.749604293 527255.4098857226 576989.985232671 555258.777749437 537614.7359722187 636040.1103363968 0.872970800117843 1.072793480026072 1.0671106829347623 1.122543489659054 0.9423364027895883 0.8289656600538308 0.9071597464623816 0.8729933359953743 0.8452528814383707 1.0 19.27875822290045 3.028202427447827 7.718541341651325 0.8837956163882521 1.0386563449618156 0.45055305789275835 0.0742505962432536 0.16091633228080235 34.992099026243245 0.020886284060395426 0.024785032022154686 1067.0933844137212 -3.028202427447827 0.15486072857356348 VTPLGYVLPSHVTEEMLWECK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTPLGYVLPSHVTEEMLWECK 21 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 0 100.67 0.00065509 108770000.0 125520.0 101260.0 111200.0 104640.0 111730.0 135790.0 134850.0 122400.0 195150.0 145110.0 False True 124844.214266583 104630.37788703741 126855.99343227308 117887.41327101908 125958.15322440588 126403.15691527736 128326.7903229742 131534.10953460605 147057.89737602658 135848.95556507856 0.9189928163030762 0.7701964100630434 0.9338017572869937 0.8677829931091742 0.9271926508412905 0.9304683748909929 0.9446284646737614 0.9682379153190803 1.082510327476006 1.0 17.051643948300903 2.255578443350791 0.6411733876839362 1.0318654506015708 0.860664758009449 0.5901868678704763 0.049253495465751446 0.5070211601241535 0.41149836774344445 0.040599774151639074 0.028632303343444316 180.12684546547186 -2.255578443350791 -0.17120069259212178 VTPTEEHVEGPLPS(ph)PVTNGTSPAQLNGGSACSSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BN50;Q15599-3;H3BQS0;H3BUQ9;Q15599;Q15599-2 H3BN50;Q15599 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 VTPTEEHVEGPLPS(0.974)PVT(0.025)NGT(0.001)SPAQLNGGSACSSR 309.04 1.7502999999999993e-104 507110000.0 110260.0 135510.0 152700.0 142780.0 139720.0 107970.0 139110.0 113560.0 105500.0 120070.0 True False 109666.37241103758 140020.36843247508 174198.83270780672 160855.93336043667 157512.5138146782 100506.28803404162 132380.7178481938 122034.42384599581 79500.93862757253 112407.02980290123 0.9756184520072345 1.2456549085763775 1.5497147555028683 1.4310131105010744 1.4012692452675481 0.8941281360273745 1.177690737672859 1.085647615277938 0.7072594905049311 1.0 16.778372737261197 2.743226734817474 24.93664234349901 1.004157391284986 1.3353441298376612 0.470151324153511 0.18273662933119014 378.5114751596444 2022840.890129537 0.05921252489955244 0.060937916279444566 553.6390755686556 -2.743226734817474 0.3311867385526752 VTQDELK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTQDELK 7 0 P19338;H7BY16 P19338 NCL Nucleolin 0 90.657 0.039498 301690000.0 186230.0 168340.0 156830.0 148600.0 150040.0 207840.0 211330.0 181260.0 286400.0 212900.0 False True 185227.35837209818 173943.09513632092 178910.30080920312 167412.74476369892 169146.70464324576 193472.51000273394 201107.16054100238 194786.54161963012 215820.557563382 199312.5397271399 0.9293311832044064 0.8727152610390199 0.897636952768413 0.8399508881522859 0.8486505910506617 0.9706991354763679 1.0090040537154328 0.9772919550686279 1.082824782920541 1.0 17.604672954473543 2.571825699442126 3.762555720003045 1.0097357469744335 0.8767443200914568 0.7841571997441444 0.0347060133879731 0.11263557441963874 2.925636815491425 0.01196081601672009 0.011005006538809812 373.1003869374768 -2.571825699442126 -0.13299142688297672 VTQGAAS(ph)PGHGIQEK ddPTM_BT-474_Trastuzumab_2h_R1 3 VTQGAASPGHGIQEK 15 0 Q9HB58;Q9HB58-6;G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58-4 Q9HB58 SP110 Sp110 nuclear body protein 1 VT(0.028)QGAAS(0.972)PGHGIQEK;VT(0.001)QGAAS(0.999)PGHGIQEK;VTQGAAS(1)PGHGIQEK 284.48 5.7963e-34 1225840000.0 1105230.0 1000900.0 969940.0 887430.0 920390.0 1170760.0 1125930.0 997210.0 1356370.0 1222040.0 True False 1099279.5644825962 1034214.3514431735 1106499.1211303873 999778.5470097527 1037596.2109210691 1089828.1168726 1071464.4644297103 1071626.8739297763 1022110.7879268314 1144048.360958919 0.9608680908918934 0.9039953088838966 0.9671786253886517 0.8738953536647331 0.9069513547935826 0.952606685227124 0.9365552200360042 0.9366971803810458 0.8934157180821606 1.0 20.125716608014717 2.7368155313534404 24.99703388800615 0.9391333436030596 0.9213186385360642 0.07541663068014226 0.035230308112489506 515.7403027429744 7387593.209438915 0.010648341743350382 0.010580779187271254 545.5260970692353 -2.7368155313534404 -0.01781470506699534 VTQHES(ph)DNENEIQIQNK ddPTM_BT-474_Trastuzumab_2h_R1 4 VTQHESDNENEIQIQNK 17 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 VT(0.018)QHES(0.982)DNENEIQIQNK;VT(0.005)QHES(0.995)DNENEIQIQNK;VT(0.002)QHES(0.998)DNENEIQIQNK;VTQHES(1)DNENEIQIQNK 313.65 2.1721999999999992e-58 4557370000.0 3520790.0 3075520.0 2841640.0 2700800.0 2746810.0 3588770.0 3438470.0 3296430.0 3790260.0 3401720.0 True False 3501834.4578365413 3177886.8240089 3241718.2120223427 3042721.0030807354 3096599.9718815926 3340686.7769558886 3272138.069869017 3542426.345532366 2856201.209881928 3184619.317240985 1.099608496022808 0.9978859346875036 1.0179295825005625 0.9554426133786112 0.9723611092594738 1.0490066297312148 1.0274816999803462 1.1123547252113541 0.8968736685163411 1.0 21.60268949535271 2.7132912938201708 24.806436556133942 1.0321810834201006 1.0056078424883625 0.0 0.06224643569588123 2790.9040085138986 2739775.34754366 0.020081810975350257 0.018938688964673864 516.7628607958013 -2.7132912938201708 -0.026573240931738074 VTQVDGHSSK ddPTM_BT-474_Trastuzumab_2h_R1 4 VTQVDGHSSK 10 0 O43324;H0YAL7;D6RBD7;C9J1V9;O43324-2 O43324 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 0 ;;; 148.28 2.5396e-05 941600000.0 492394.0 800803.0 898889.0 911770.0 907538.0 962564.0 1031003.0 946456.0 1019242.0 1063732.0 False True 489743.0054141162 827457.2437593648 1025444.7579167506 1027199.9885141156 1023107.5849008396 896024.2163119316 981129.4460760662 1017085.3527261873 768063.4662430736 995843.7130532167 0.49178701335833497 0.8309107472521108 1.0297245887838948 1.0314871450709486 1.027377661263767 0.8997638932365777 0.9852243210613469 1.021330294497562 0.7712690818604678 1.0 19.92555981904438 4.671700094181243 2.6512681674519 0.9757467025937707 0.4316593636095574 0.7757504068516979 0.07774295327017441 0.16713501761203403 1.6995441932333117 0.018794615292311457 0.18683578684134464 46956.973116939225 -4.671700094181243 -0.5440873389842134 down VTRS(ph)PPTQVAISSDSAR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTRSPPTQVAISSDSAR 17 1 Q6ZUT6;Q6ZUT6-4;H0YM82;Q6ZUT6-3 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 VT(0.051)RS(0.946)PPT(0.003)QVAISSDSAR;VT(0.058)RS(0.941)PPT(0.001)QVAISSDSAR;VT(0.033)RS(0.965)PPT(0.001)QVAISSDSAR 158.99 1.9801e-09 1574540000.0 149213.0 166706.0 163349.0 166901.0 170617.0 178706.0 169235.0 144195.0 206134.0 190757.0 True False 148409.6537871226 172254.70843409508 186347.11934503954 188030.64948725473 192344.06362381135 166352.47484867484 161048.4565095184 154955.56310737372 155335.03775408573 178582.72494471585 0.8310414897805262 0.9645653491255678 1.0434778582459603 1.0529050306823557 1.0770586218983702 0.9315149318063819 0.9018143079593753 0.8676962632043137 0.8698211868038919 1.0 17.446233003709015 2.509798912078609 9.009987962969655 0.89812533677188 0.9989030314522896 0.22859049284980315 0.07244859616269493 0.49663135195411195 131.44223986913426 0.02467408850158888 0.022885118121565455 323.44386061334774 -2.509798912078609 0.10077769468040965 VTS(ph)GGVSESPSGFSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTSGGVSESPSGFSK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 VT(0.004)S(0.996)GGVSESPSGFSK 222.45 1.4687e-12 222640000.0 493290.0 400150.0 399800.0 372020.0 367960.0 605390.0 481340.0 441860.0 721250.0 608950.0 True False 490634.181449671 413468.7508542174 456088.3648761043 419117.6938559303 414817.5249302098 563540.8142347732 458055.7453026356 474833.83691961726 543507.6017548502 570086.2896516753 0.8606314348472583 0.7252739775707433 0.8000339126814923 0.7351829038232311 0.7276398897150548 0.9885184479337304 0.8034849348552291 0.8329157279150537 0.953377780909159 1.0 19.120820780083573 2.7568426660194416 24.7958234917862 0.890133751558924 0.7670431717294526 0.49620452117035907 0.0711978880892473 718.5689009883398 974588.9555490048 0.021457987028362206 0.022718014542787796 571.2716418151234 -2.7568426660194416 -0.12309057982947147 VTSAHKGPDETLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VTSAHKGPDETLR 13 1 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ;;; 157.09 2.4843000000000006e-05 3234660000.0 1614550.0 2261810.0 2264420.0 2326230.0 2170400.0 2708480.0 2903370.0 2473100.0 3719720.0 3032080.0 False True 1605857.4421933698 2337092.9785569827 2583230.6533085257 2620730.479486265 2446787.5750313313 2521249.1526761246 2762922.901149526 2657655.280147342 2803044.847694355 2838570.058505709 0.5657276054827167 0.8233346122826661 0.9100464670822322 0.9232572828820298 0.8619789276292792 0.8882110008598381 0.9733502588285576 0.9362655229113476 0.9874848215548165 1.0 21.436732918409735 5.15515183137792 1.1731692687892856 0.9364048416169043 1.0305457423539579e-12 0.8885905678577061 0.03984340251667406 1.1403166206238204 0.6819412778621384 0.011685415404735576 1.6505723066905844 142939.35938406194 -5.15515183137792 -0.9364048416158738 VTSFSTPPT(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 VTSFSTPPTPER 12 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 VTSFSTPPT(1)PER 207.8 2.2038e-06 251990000.0 567720.0 553790.0 499580.0 553610.0 496910.0 578510.0 546000.0 511480.0 681150.0 562920.0 True False 564663.4585996222 572222.5653768752 569916.5215727972 623696.9692370887 560188.5430836795 538518.9653660589 519587.89407744864 549649.2348428138 513289.70944237965 526993.963659941 1.0714799362749223 1.0858237566950946 1.0814479118788414 1.1834992661121795 1.0629885382238615 1.0218693239407857 0.9859465760650129 1.0429896217890873 0.9739954246868672 1.0 19.007426911351022 2.855135391953894 3.4643635130092645 1.0085526280059474 1.1040175905817613 0.6552374564421113 0.03420425037894835 0.16017880198112777 3.5544361727629505 0.01092918928346994 0.011677296969921919 716.3667037957351 -2.855135391953894 0.09546496257581394 VTSSMSS(ph)PSMQPK ddPTM_BT-474_Trastuzumab_2h_R1 9 VTSSMSSPSMQPK 13 0 Q13136-2;A0A2R8Y7R9;Q13136 Q13136-2 PPFIA1 Liprin-alpha-1 1 VTSSMS(0.048)S(0.904)PS(0.048)MQPK;VTSSMS(0.005)S(0.982)PS(0.013)MQPK;VTSSMS(0.039)S(0.648)PS(0.313)MQPK;VTSSMS(0.025)S(0.655)PS(0.319)MQPK;VTSSMSS(0.996)PS(0.004)MQPK;VTSSMS(0.116)S(0.869)PS(0.015)MQPK;VTSSMS(0.001)S(0.995)PS(0.004)MQPK;VTSSMS(0.003)S(0.941)PS(0.057)MQPK;VTSSMS(0.017)S(0.982)PS(0.001)MQPK 317.77 8.0874e-51 6646490000.0 5393520.0 5210890.0 4629160.0 4517580.0 4531720.0 5981330.0 5789650.0 5324080.0 7195740.0 5525410.0 True False 5364481.887596402 5384331.323600472 5280905.490619974 5089505.16480209 5108807.6803911645 5567854.735636326 5509582.510889192 5721389.884730447 5422446.294976005 5172773.603258504 1.037061023551685 1.0408983142445478 1.020904044068999 0.9839025550231002 0.9876341151240323 1.076377039221076 1.0651118594130085 1.1060584366434192 1.0482666961415485 1.0 22.302506619825103 2.725411940481745 24.69443621814083 1.0694586685406766 1.0142725037132079 0.32196198448655844 0.03095815609653672 639.6127834470357 1201249.2568481527 0.010152835960407563 0.009630279265734737 531.3882418930497 -2.725411940481745 -0.05518616482746874 VTSSVPLPSGSTSS(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 7 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 VTSSVPLPSGS(0.002)T(0.002)S(0.206)S(0.791)PGR;VTSSVPLPSGSTSS(1)PGR;VTSSVPLPSGSTS(0.001)S(0.999)PGR;VTSSVPLPSGSTS(0.001)S(0.999)PGR;VTSSVPLPSGSTSS(1)PGR;VTSSVPLPSGSTS(0.002)S(0.998)PGR;VTSSVPLPSGSTSS(1)PGR 360.12 3.430099999999999e-88 8850460000.0 4608935.0 5273713.0 4814227.0 4938780.0 5157735.0 4735468.0 4984154.0 4706003.0 5514845.0 4850030.0 True False 4584121.006060819 5449245.349178167 5492028.315588773 5564029.0416154815 5814541.979959553 4408116.24325263 4743051.429702735 5057188.840459037 4155785.344886969 4540496.933080411 1.0096077750130343 1.2001429423896195 1.209565471914726 1.2254229269659864 1.2805959492224108 0.9708444490154144 1.0446106449597148 1.113796334408729 0.9152710388612812 1.0 22.114418770729714 2.730957134950253 24.978104728579737 1.0269430096550711 1.1895075864083362 0.5322470355577358 0.08164902687769328 506.5531810929072 1664068.4508978855 0.02670215321706933 0.025612490150045696 538.216657681992 -2.730957134950253 0.16256457675326508 VTTEIQLPSQS(ph)PVEEQSPASLSSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTTEIQLPSQSPVEEQSPASLSSLR 25 0 E9PMS6;E9PMT2;Q8WWI1-5;A0A0A0MTE2;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1;Q8WWI1-4;Q8WWI1-2;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 VTTEIQLPS(0.001)QS(0.999)PVEEQSPASLSSLR;VTTEIQLPS(0.001)QS(0.999)PVEEQSPASLSSLR 233.71 1.4716999999999996e-38 407120000.0 642030.0 686930.0 639010.0 634420.0 595230.0 676590.0 672250.0 551950.0 611960.0 652080.0 True False 638573.3818162389 709794.0497920467 728977.0536255102 714737.5069514521 671029.0122953826 629818.9258215447 639730.699255614 593139.3117453092 461150.6578438798 610463.6961262242 1.0460464493931223 1.1627129578648754 1.194136618199129 1.1708108303358753 1.099211986811801 1.031705783354754 1.0479422499898148 0.9716209424231954 0.755410454004342 1.0 19.219545976077015 2.03959698977433 1.095652848660411 0.890181011086885 1.1416295284282196 0.6298033708403672 0.0735771829175105 0.3145608319271461 0.6987937371185016 0.05546883901003364 0.026612741847223273 109.54611743368177 -2.03959698977433 0.25144851734133467 VTTHPLAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VTTHPLAK 8 0 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 ;; 103.74 0.0047148 4150120000.0 7019500.0 7270630.0 6774200.0 6325580.0 5608650.0 7514670.0 7492460.0 6696480.0 10082400.0 7526840.0 False True 6981707.791939767 7512628.52436136 7727948.477598057 7126397.779423671 6322878.3324269615 6995198.550530437 7130021.085823295 7196205.341636437 7597727.617238279 7046470.62714807 0.9908091811297999 1.066154805984334 1.096711940843753 1.0113428631870915 0.8973113870746425 0.9927237223667553 1.011857064776986 1.0212496045767196 1.078231645210635 1.0 22.74846940362032 3.498936981035841 24.212203009870436 0.9990170016965159 1.052936464135891 0.18307716788615547 0.04823850693146048 857.3170060124779 951491.0566115257 0.013565406595557458 0.020795728188582767 3154.5468448237766 -3.498936981035841 0.053919462439375065 VTTVTEIGKDVIGLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTTVTEIGKDVIGLR 15 1 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 153.48 2.4139e-06 452350000.0 256740.0 305520.0 289350.0 294290.0 271290.0 334330.0 345770.0 272800.0 432250.0 375760.0 False True 255357.74036649577 315689.04850925965 330087.96492471424 331547.08382576646 305837.1734381906 311218.5540281664 329043.78413032903 293157.7212503314 325727.77935325395 351778.6750956785 0.7259045486399718 0.8974081456853432 0.9383398946366925 0.942487726794669 0.8694022551395633 0.8846998867782979 0.9353716055722653 0.8333584210884781 0.925945210478324 1.0 18.42430850339167 -1.5259744124732835 0.01477072705917741 1.9191182321703746 3.5050772982594205e-06 0.3131244109598421 0.05913163339764759 4431.412021736366 10.494587971037054 755.7322146673582 612.8986826275027 0.029786919212142982 1.5259744124732835 -1.9191147270930764 VTVAGGVHISGLHTESAPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTVAGGVHISGLHTESAPR 19 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 223.5 1.2644e-19 1407440000.0 525510.0 1026630.0 1165000.0 1237550.0 1245910.0 1189750.0 1220810.0 829680.0 933820.0 1110510.0 False True 522680.7125496494 1060800.75893906 1329021.8736384732 1394223.7031111394 1404569.2534128658 1107505.3828702515 1161754.7563529126 891594.934629674 703692.5735469185 1039636.3010445567 0.5027534263900703 1.0203575595361942 1.2783527011351579 1.3410687003813901 1.3510198249153564 1.0652815621746803 1.1174626695755616 0.8576027344696018 0.6768641810986163 1.0 19.987647483797737 1.69370222452639 4.168984877793615 0.8171452276838201 1.119621140709184 0.1827417222433927 0.23969449394373998 0.27650279163780783 11.235215212971763 0.13848135635612627 0.06615770648866977 49.39718773664115 -1.69370222452639 0.3024759130253639 VTVAGLAGKDPVQCSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTVAGLAGKDPVQCSR 16 1 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 ; 201.75 2.9322e-11 4675300000.0 1333420.0 1499700.0 1238160.0 1542360.0 1447350.0 1932210.0 1945510.0 1877920.0 2589600.0 2090140.0 False True 1326241.0148768907 1549616.607912204 1412482.1657203524 1737622.6178582646 1631661.4433844455 1798640.870633095 1851398.2487300679 2018059.926284541 1951427.7788622011 1956745.4757411168 0.6777790117923116 0.7919357050386368 0.7218527821996753 0.8880166784083865 0.833864937271136 0.9192002194111937 0.9461620183528731 1.0313349136633119 0.9972823768114749 1.0 20.900024678499456 3.192188528818264 0.5355077889950726 1.028400013156132 0.6810358844762324 0.8838179460327364 0.039282378097942314 0.33030714102956676 0.19144087079337202 0.029397804277480642 0.05833655742848952 1556.6412285885845 -3.192188528818264 -0.3473641286798995 VTVLQASSISAEYADIFCQFNFIHR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTVLQASSISAEYADIFCQFNFIHR 25 0 A0A3B3ITW6;Q12756-3;Q12756-2;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;Q12756;A0A3B3ITK3;H7C3Y8 A0A3B3ITW6 KIF1A Kinesin-like protein KIF1A 0 ;; 338.56 3.446899999999998e-88 515057000.0 258291.0 291320.0 298228.0 311818.0 261180.0 300182.0 319747.0 285900.0 354008.0 315183.0 False True 256900.38995482793 301016.41009334114 340215.910155755 351294.12682857976 294439.7248648555 279431.1248924205 304279.61605784256 307235.3097707836 266767.4718641683 295067.7510982581 0.8706488221726394 1.020160315632399 1.1530094660953394 1.1905541202691385 0.9978715863354602 0.9470066581399111 1.0312194908636998 1.0412364910337955 0.9040888774569413 1.0 18.170686727050256 3.0469320900589363 24.999992699947605 0.9932719954139421 1.0665446362430766 0.13307138562726373 0.08789833639780982 262.5389164325766 139848.65426414035 0.02695256177689921 0.032214465949129946 1114.120306740515 -3.0469320900589363 0.07327264082913454 VTVPTSGNTIES(ph)PLHENISNSTSFKDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTVPTSGNTIESPLHENISNSTSFKDEK 28 1 A0A2R8YFF1;Q8N302 A0A2R8YFF1 AGGF1 Angiogenic factor with G patch and FHA domains 1 1 VTVPTSGNTIES(1)PLHENISNSTSFKDEK 167.16 3.4703e-12 136510000.0 42584.0 45327.0 39863.0 40621.0 36915.0 50566.0 51864.0 50963.0 80442.0 57232.0 True False 42354.73247552716 46835.68179424988 45475.36390459265 45763.614435035015 41615.90643765276 47070.49143956046 49355.14018027988 54766.11784487037 60618.146967575325 53579.40476121962 0.7905039756280234 0.8741359110459772 0.8487470905519909 0.8541269661166221 0.776714609337617 0.878518371925433 0.9211587997334895 1.0221486798694277 1.1313702949430728 1.0 15.709390933241748 1.8791236451896705 1.770032676857777 1.0684033214140738 0.8354626242476362 0.8386383457226465 0.04232181162507588 0.12367571332138122 0.7271956013429606 0.027144131940828507 0.012272956195831677 75.7048398724382 -1.8791236451896705 -0.23294069716643762 VTVVFSTVFKDDDDVVIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VTVVFSTVFKDDDDVVIGK 19 1 O15144 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ; 145.05 1.1784e-07 40429000.0 64002.0 43219.0 41008.0 39147.0 37536.0 64193.0 62724.0 59509.0 85572.0 61131.0 False True 63657.42034329069 44657.51828856282 46781.56995207425 44103.00618616764 42315.98710669741 59755.489004068106 59689.800491051115 63949.863760579094 64483.92720605349 57229.567243117825 1.1123169964376385 0.7803224878296303 0.8174370732761393 0.7706332287786305 0.7394077772235145 1.0441366566729375 1.0429888494085922 1.117427002180755 1.126758951926341 1.0 15.80447307714805 2.6263471625825217 5.566453229321614 1.0789726826779407 0.8355669247914534 0.5394311744180968 0.10253071422355192 0.1689193648292411 7.220779151879016 0.03342722722814192 0.03141604299704889 423.006618539656 -2.6263471625825217 -0.24340575788648722 VTWAHPEFGQVLASCSFDR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTWAHPEFGQVLASCSFDR 19 0 K7ELV2;Q96EE3;Q96EE3-1;K7EP88;K7EPZ5 K7ELV2 SEH1L Nucleoporin SEH1 0 ; 155.28 2.7425e-08 1127390000.0 403150.0 478290.0 463550.0 470440.0 475150.0 492370.0 506620.0 428910.0 505910.0 466520.0 False True 400979.48519417597 494209.59351758985 528813.8107511704 529997.6557647007 535657.536065304 458333.62081431027 482112.85512365744 460917.4421608488 381235.2593466846 436746.2941921339 0.9181062106912272 1.1315713495216897 1.2108032003553397 1.2135138015196154 1.2264729963104322 1.0494276125733528 1.1038739458921794 1.0553436818815491 0.8728986700433713 1.0 18.73643593631196 1.5006550323003733 2.730446475346574 0.9375897455708123 1.131198408954757 0.3811268638594355 0.09195472518886884 0.25339218884728043 3.8503380402338516 0.0718093355199219 0.025138624824654014 31.670508198340904 -1.5006550323003733 0.19360866338394478 VTWDGHSGSMAR ddPTM_BT-474_Trastuzumab_2h_R1 3 VTWDGHSGSMAR 12 0 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 ;; 112.45 0.0012722 1243610000.0 3707090.0 3700910.0 3426070.0 3168400.0 3119570.0 4081800.0 4309640.0 3795050.0 5601600.0 4128310.0 False True 3687131.4393364177 3824092.552102661 3908430.8760657157 3569519.11513663 3516828.748359972 3799634.773523676 4101166.2487764354 4078255.901873426 4221160.737594412 3864837.7213759916 0.9540197299729559 0.9894574695729207 1.0112794269339216 0.9235883554421995 0.9099550878705152 0.9831291887129736 1.0611483701096522 1.0552204764813389 1.0921961132410907 1.0 21.881976408188095 2.3197641526083426 4.3191363962979645 1.05696428301905 0.9594332792824287 0.6241578916548891 0.03458902295736821 0.14090244378069577 4.914849327095824 0.013033375791438238 0.010586005046447168 208.81618284621092 -2.3197641526083426 -0.09753100373662127 VTYHPDGPEGQAYDVDFTPPFR ddPTM_BT-474_Trastuzumab_2h_R1 4 VTYHPDGPEGQAYDVDFTPPFR 22 0 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 ;;; 190.88 1.6219e-17 3741590000.0 1779280.0 1796490.0 1683351.0 1848922.0 1890759.0 1957740.0 1874180.0 1784120.0 2269440.0 2189780.0 False True 1769700.5541765906 1856285.0836488616 1920352.1888508112 2082995.3356257582 2131535.9512433955 1822406.0418242502 1783518.7533371304 1917260.0939777894 1710166.9209379943 2050026.3656350218 0.8632574604124192 0.905493273045712 0.9367451175467968 1.0160822175477358 1.0397602620994217 0.8889671237275706 0.8699979586773083 0.9352367979832755 0.8342170372078352 1.0 20.96721103384821 -0.03623089066227747 7.959867060059265 0.9999999986474701 0.9249835742917342 0.12446331873922734 0.06202037190079275 8537863.813601144 1072613.4660966874 0.06279549168570872 0.015230143812657219 0.919960349033139 0.03623089066227747 -0.07501642435573597 VTYLVHNFEEGGGVAMGMYNQDK ddPTM_BT-474_Trastuzumab_2h_R1 5 VTYLVHNFEEGGGVAMGMYNQDK 23 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 ;;;; 316.48 2.3046999999999994e-73 4193594000.0 3439640.0 3368740.0 3131260.0 3077120.0 3085550.0 3497670.0 3723260.0 3559360.0 4662830.0 3555640.0 False True 3421121.360419929 3480866.4744536704 3572114.190600175 3466683.076495774 3478476.5030123126 3255884.30552956 3543151.689565567 3824977.5172638595 3513738.025220896 3328716.0110634402 1.0277600579470785 1.0457084542161414 1.0731207404680267 1.0414475326143118 1.0449904682319318 0.9781201804864655 1.0644199378347148 1.1490849638572431 1.0555835984633444 1.0 21.666534361728726 2.0011954441740807 24.99828651094293 1.0902790035702878 1.0367187329262715 0.05350201042583447 0.04221725143265599 53.95489508284293 1128255.5436896267 0.015537800940687383 0.011393007532431295 100.27564038494013 -2.0011954441740807 -0.05356027064401636 VTYMEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 VTYMEEER 8 0 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ;; 118.32 0.004439800000000001 1716130000.0 1437400.0 1768310.0 1658930.0 1612500.0 1426380.0 1592400.0 1572210.0 1424500.0 1958020.0 1643820.0 False True 1429661.198110152 1827167.12938403 1892492.9243219488 1816642.3346666507 1608021.0381833727 1482321.136106398 1496156.1958745513 1530803.4234644345 1475492.207123788 1538910.000254894 0.9290089725021953 1.1873125322997389 1.2297619250043796 1.1804734093389186 1.0449090836481871 0.9632279573599997 0.9722181255737755 0.9947322606330996 0.9587904470562919 1.0 20.553477430631208 3.036391033194921 4.077771904940728 0.9797472855395882 1.141892902244532 0.47132682002109805 0.07631206452888763 0.18186044820620964 6.66165868718446 0.023215569889250335 0.027358846080872933 1087.404267861551 -3.036391033194921 0.16214561670494387 VTYRPLDPDNYDKDLSFIK ddPTM_BT-474_Trastuzumab_2h_R1 1 VTYRPLDPDNYDKDLSFIK 19 2 O60825;O60825-2 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase 0 64.83 0.016571000000000002 178760000.0 175560.0 132350.0 151070.0 145590.0 148470.0 204330.0 161620.0 183190.0 273550.0 207320.0 False True 174614.80446654983 136755.18974273547 172339.3428760206 164021.67907232107 167376.77444936504 190205.148041083 153801.82315164327 196860.56801997146 206137.26788220374 194088.66010441817 0.8996651549483027 0.7046016478714534 0.887941329407413 0.84508635890463 0.8623727648968139 0.9799910408921064 0.7924307533933157 1.014281658258973 1.0620778554053776 1.0 17.566356303518585 1.9479927264848618 0.7305717114318779 1.0414867721994077 0.8275491538137474 0.47841624619087353 0.0756844120143943 0.5474605552015743 0.5576353089107794 0.06482431894086382 0.034276208726417054 88.71411541732681 -1.9479927264848618 -0.21393761838566028 VTYS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 VTYSPR 6 0 Q96K76-2;Q96K76-4;Q96K76;Q96K76-3 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 VTYS(1)PR;VT(0.008)YS(0.992)PR 81.215 0.065524 359390000.0 768060.0 830420.0 844840.0 754890.0 604430.0 751600.0 817270.0 635180.0 1046440.0 858870.0 True False 763924.8502994885 858060.0277005092 963786.1285190788 850458.9965993847 681400.5777627104 699643.6610760926 777735.5278254143 682580.3569786862 788558.8835776034 804056.1812843984 0.9500888968718527 1.0671642699516906 1.1986552071268552 1.057710911743583 0.847453938696475 0.870142755396125 0.967265156251968 0.8489212232512573 0.980726100902502 1.0 19.616936783836866 3.3193603165702057 6.7181161910822516 0.9087723290448568 1.079818625356166 0.47962388746248796 0.07555778295477765 0.1667606265640377 11.325328098638911 0.02086655549625891 0.028249226038621643 2086.2210185055433 -3.3193603165702057 0.17104629631130908 VTYVVLDEADR ddPTM_BT-474_Trastuzumab_2h_R1 1 VTYVVLDEADR 11 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 100.48 0.009306299999999998 152790000.0 89478.0 95680.0 96923.0 116900.0 99532.0 113540.0 106040.0 107670.0 120860.0 108360.0 False True 88996.26038994036 98864.65096021867 110568.91593018181 131699.52801397312 112206.81022761615 105691.24704441128 100910.44008786199 115704.88213718178 91075.67244102778 101444.37202833651 0.8772912544136109 0.9745700917996984 1.0899462801080433 1.2982438096929163 1.106092018552526 1.0418640771406076 0.9947367021964967 1.1405746797354304 0.8977893067896124 1.0 16.6303293033359 1.2333863139174017 24.999892243098884 0.9488946462466419 1.0713637536198295 0.15507603079086263 0.10808085100875119 256.36668994699744 1238580.2806486185 0.09792017014800128 0.027371633297240114 17.115370857775716 -1.2333863139174017 0.12246910737318761 VVDDEIYYFR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVDDEIYYFR 10 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9 Q86U86-8 PBRM1 Protein polybromo-1 0 ;;; 237.21 8.4458e-12 839760000.0 400744.0 499404.0 448494.0 452775.0 451130.0 498053.0 496510.0 444733.0 521227.0 486205.0 False True 398586.4388308444 516026.3602439063 511638.05682026915 510096.26857593335 508578.731442998 463623.7684006532 472491.9144476081 477921.23476841475 392777.58993396966 455174.9806389572 0.8756773895422021 1.1336878831071258 1.1240469678321319 1.1206597248818022 1.1173257605878835 1.0185616260143209 1.0380445642779885 1.0499725492326648 0.8629155965088493 1.0 18.796061734409733 1.357141569608109 6.3295051326460925 0.9327708084697262 1.0664993454902392 0.2951973669707977 0.07897826188253237 0.2366472452553331 11.55587975561796 0.052902101628403385 0.01906195876730879 22.758391789792352 -1.357141569608109 0.13372853702051302 VVDDLLDQITGGDHSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVDDLLDQITGGDHSR 16 0 Q9H8M2;Q9H8M2-3;Q9H8M2-1;Q9H8M2-6;Q9H8M2-2;H0YBR9;H0YAW8;H0YBF1 Q9H8M2 BRD9 Bromodomain-containing protein 9 0 ;;; 142.19 1.5319e-06 81213000.0 92841.0 110893.0 112820.0 95614.0 101920.0 110506.0 100505.0 96185.0 107090.0 105270.0 False True 92341.15437160475 114584.00646876602 128704.0753509808 107718.72259647575 114898.90787283143 102866.98032314346 95643.18918361544 103362.81311753351 80699.10443248108 98551.57847381869 0.9369830072903012 1.1626805804962983 1.3059565087044491 1.0930187447488973 1.1658758758831609 1.0437882570340689 0.9704886584746494 1.0488194579754293 0.8188514652144276 1.0 16.588591358257208 2.4819878458310733 2.110834262428837 0.96864824519718 1.143319190657292 0.38764418576026516 0.10152941166664183 0.3465030568188041 3.1246372290716646 0.041254210775823655 0.03403488966001011 303.38062788788335 -2.4819878458310733 0.17467094546011197 VVDLMAHMASK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVDLMAHMASK 11 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;; 169.65 1.4828e-05 26347570000.0 19012450.0 19692710.0 18982150.0 15466560.0 13385560.0 19955730.0 21275610.0 17242900.0 25687300.0 19620090.0 False True 18910089.081681766 20348169.94785543 21654671.72419446 17424624.91017789 15090131.723570034 18576237.355835553 20246427.463577133 18529652.755672053 19357009.10718526 18367919.058595832 1.029517226276768 1.1078103013706868 1.1789398491529441 0.9486444738019194 0.8215482480857375 1.0113414206897995 1.1022711608750364 1.008805227013483 1.053848780878994 1.0 24.13068485386719 3.7297089869085758 24.96984136177865 0.9941418234872818 1.1056612448918255 0.3131728324004611 0.07670259253452051 822.8599685174177 2321232.9399276557 0.022287999704891398 0.035066822807111264 5366.720613514599 -3.7297089869085758 0.11151942140454374 VVDLMAHMASKE ddPTM_BT-474_Trastuzumab_2h_R1 9 VVDLMAHMASKE 12 1 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;;;;;;; 179.93 3.2204e-05 45020499000.0 25186200.0 28688990.0 29513870.0 26413530.0 24192070.0 31856450.0 36665740.0 27416080.0 42147020.0 33755290.0 False True 25050600.297649886 29643885.689289335 33669166.35684314 29757480.189759772 27272786.716867026 29654288.593517102 34892078.07947119 29462007.10563336 31760451.662133403 31600998.49284232 0.7927154676243502 0.9380680074398196 1.0654462821631812 0.9416626565296629 0.8630356006961096 0.9383972028679363 1.1041447974301921 0.9323125379189063 1.0050458269325635 1.0 24.913466807990932 2.446211951523727 24.99169925566984 1.0031191049779704 0.9274696182141716 0.2406490563180207 0.07542874336008475 350.29111271846017 283225.87937967526 0.026889859958553333 0.022497842380533137 279.39070369509545 -2.446211951523727 -0.07564948676379879 VVDPFSKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVDPFSKK 8 1 P61247;E9PFI5;H0Y8L7;H0Y9Y4;D6RI02 P61247 RPS3A 40S ribosomal protein S3a 0 ; 98.033 0.012522 1421670000.0 2331500.0 2358900.0 2303200.0 2149230.0 2159090.0 2860300.0 2965200.0 2776500.0 4183500.0 3135000.0 False True 2318947.463054001 2437414.5605148375 2627470.5402267235 2421322.297634483 2434037.3135709497 2662574.1934219575 2821761.947835988 2983696.5287813237 3152532.4810279612 2934921.615991469 0.790122451795231 0.8304871064474528 0.8952438545242433 0.8250040765795774 0.8293363953260771 0.9072045327937974 0.9614437170863748 1.016618812756053 1.074145375416774 1.0 21.484890542598013 2.197348194385365 1.4048566683378334 1.037506997673331 0.8352159189800716 0.8867459811057118 0.030773759807535515 0.1308858864962607 0.5000888323594083 0.019075457934414005 0.010746220552079369 157.5245306834744 -2.197348194385365 -0.20229107869325946 VVDRDSEEAEIIR ddPTM_BT-474_Trastuzumab_2h_R1 6 VVDRDSEEAEIIR 13 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;;;; 225.86 1.0706e-11 11323690000.0 3095440.0 3899850.0 3536870.0 3688910.0 3525840.0 3641770.0 3836250.0 3261330.0 4196930.0 3877650.0 False True 3078774.4949757135 4029654.1497408915 4034830.5529748495 4155925.6277675345 3974834.824709022 3390023.0117044663 3650675.931601858 3504707.0052981805 3162652.8374807383 3630175.0571768084 0.8481063437668156 1.1100440299082321 1.1114699675427615 1.1448278835896148 1.0949430157233948 0.9338456020192292 1.0056473514643653 0.9654374651628496 0.8712122108899997 1.0 21.79160769000562 2.739016494971328 24.993223325218096 0.9583606970550801 1.0719175354287391 0.2814876718418491 0.08436311821749048 53.2932172516935 2921828.1137966984 0.02650656600678648 0.02658245315098133 548.2977894648947 -2.739016494971328 0.11355683837365904 VVDRDSEEAEIIRK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVDRDSEEAEIIRK 14 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;; 211.13 2.3989e-09 2765150000.0 1513140.0 2059300.0 1800170.0 2066820.0 2087160.0 2301350.0 2437310.0 2150880.0 3288380.0 2573800.0 False True 1504993.4223656591 2127842.5556268618 2053618.2886418628 2328479.2000841703 2352947.4544334672 2142263.0912951864 2319408.003871623 2311389.5875473325 2478002.8110344727 2409537.8804589603 0.6245983657575839 0.8830915558055297 0.8522871980127147 0.9663592421467347 0.9765139919631751 0.8890763281493361 0.9625945384306763 0.9592667566226712 1.028414133320233 1.0 21.20032505125732 5.33321918571854 0.9050097752097258 0.9644653826343789 3.745778545685304e-19 0.8484272312282513 0.04276969625387972 1.9828388537808745 0.5958405241125935 0.013094748927313875 2.4355514708003745 215386.85044698737 -5.33321918571854 -0.9644653826343789 VVDVEEQQLEES(ph)GPHDLTETSYLPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVDVEEQQLEESGPHDLTETSYLPR 25 0 P38398-7;P38398;P38398-4;P38398-8;P38398-6;E7EUM2;B7ZA85;H0Y8B8;P38398-5;P38398-3;A0A2R8Y7V5;K7EPC7 P38398-7 BRCA1 Breast cancer type 1 susceptibility protein 1 VVDVEEQQLEES(1)GPHDLTETSYLPR;VVDVEEQQLEES(1)GPHDLTETSYLPR 197.81 5.110899999999999e-25 103311000.0 34478.0 34703.0 37798.0 38307.0 42403.0 42621.0 47360.0 39158.0 48685.0 49658.0 True False 34292.37427886591 35858.06837659348 43119.629853894425 43156.66227229481 47802.7707077283 39674.710589042166 45069.01586723073 42080.16880029501 36687.234095577005 46488.7839256473 0.737648339730978 0.771327304107239 0.9275275929535736 0.928324181189988 1.02826459784757 0.8534254338099412 0.9694599871511523 0.9051681985830541 0.7891631270513209 1.0 15.504595067239316 4.277427192451561 4.612871858510198 0.9248192502650256 0.7470632603293003 0.5248006217473935 0.06518887713499912 0.14251982830043153 6.718798800958748 0.015598362929820971 0.04369269870479632 18942.059324927035 -4.277427192451561 -0.1777559899357254 VVDYSQFQES(ph)DDADEDYGR ddPTM_BT-474_Trastuzumab_2h_R1 92 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.002)QFQES(0.998)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.002)QFQES(0.998)DDADEDYGR;VVDYS(0.037)QFQES(0.962)DDADEDYGR;VVDY(0.001)S(0.087)QFQES(0.912)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.396)QFQES(0.603)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDY(0.001)S(0.406)QFQES(0.593)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.001)QFQES(0.999)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.001)QFQES(0.999)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.004)QFQES(0.996)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.013)QFQES(0.987)DDADEDYGR;VVDYS(0.002)QFQES(0.998)DDADEDYGR 419.19 8.827999999999994e-149 94280962000.0 8284320.899999999 9158220.9 8538265.399999999 8939270.46 8602947.6 9414405.399999999 8973351.899999999 8369678.5 9421961.8 9224741.6 True False 8239719.036748977 9463046.746395065 9740378.952386742 10070981.183671946 9698481.983194629 8763609.713824553 8539276.58706386 8994266.41003627 7100045.562209797 8636010.69338938 0.9541117223321929 1.0957659829716002 1.1278794455225403 1.1661612683482425 1.1230280192471902 1.0147752272392212 0.9887987509789019 1.0414839362022934 0.8221441374134332 1.0 23.04193359907763 2.0714379883957754 1.182368356027094 0.9434635520356464 1.0960630919274854 0.40108175280470504 0.07459484357625876 0.5013167406857076 1.3065043271573378 0.05493772417184826 0.026987653993673342 117.8794194745154 -2.0714379883957754 0.15259953989183905 VVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_BT-474_Trastuzumab_2h_R1 6 VVDYSQFQESDDADEDYGRDSGPPTK 26 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK 319.7 2.509e-82 13437130000.0 2163709.0 2598040.0 2379200.0 2665800.0 2566030.0 2607130.0 2894310.0 2597380.0 4214010.0 3213580.0 True False 2152059.8311546696 2684514.1908516544 2714170.679622881 3003290.0066693714 2892798.7104486027 2426905.239623883 2754301.167962089 2791209.6848283955 3175523.7003410147 3008486.5731157446 0.7153297110865564 0.8923138347502853 0.9021714452299999 0.9982726974775921 0.9615461595537953 0.806686412135273 0.9155105402746047 0.9277786744242219 1.0555219786313614 1.0 21.52060648735418 4.906228226172365 1.6544658054597754 0.9397724720803011 0.5575054159651945 0.5426349427063821 0.06360413082072436 1.2727349411101716 2.418042628352043 0.016915079540392543 0.8812934367377181 80580.17869970576 -4.906228226172365 -0.3822670561151066 VVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVDYSQFQESDDADEDYGRDSGPPTKK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDYS(0.001)QFQES(0.999)DDADEDYGRDSGPPTKK 133.47 1.637e-05 3033000000.0 249323.0 245499.0 218166.0 221594.0 217536.0 290744.0 299293.0 267764.0 471970.0 323675.0 True False 247980.67267038923 253670.28580772082 248881.87646713402 249647.7776794552 245237.92016311057 270645.5516177583 284815.0541797103 287745.90935804165 355659.3175739851 303017.78438789083 0.8183700279220278 0.8371465269609369 0.8213441233156868 0.8238717017344531 0.8093185707185533 0.8931672184339745 0.939928508668391 0.9496007303310628 1.1737242363263676 1.0 18.20904294369699 1.8544521507266107 1.186582539643571 1.0716700012152278 0.8249012114413382 0.7839175929196394 0.05079472564954451 0.1996735116727314 0.5201759694194108 0.03894516421843085 0.016360370806442096 71.52405866550261 -1.8544521507266107 -0.2467687897738896 VVDYSQFQESDDADEDYGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 ; 321.09 1.2851999999999999e-61 731990000.0 278540.0 257630.0 238520.0 239770.0 299070.0 252550.0 263670.0 237258.0 262182.0 272650.0 False True 277040.37158870295 266205.0588093763 272101.54274699435 270124.85741582816 337154.79177323065 235091.81293875305 250915.27478278524 254963.39673171274 197570.75915880807 255249.24357259143 1.0853719592313473 1.0429220282240292 1.0660229152436655 1.058278777382571 1.3208845873713462 0.9210284412533206 0.9830206400256241 0.9988801265896899 0.7740307332296563 1.0 17.961547160140523 VVEAVNS(ph)DS(ph)DSEFGIPK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVEAVNSDSDSEFGIPK 17 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 VVEAVNS(1)DS(0.997)DS(0.003)EFGIPK;VVEAVNS(1)DS(0.997)DS(0.003)EFGIPK;VVEAVNS(0.999)DS(0.995)DS(0.006)EFGIPK;VVEAVNS(1)DS(0.998)DS(0.002)EFGIPK 166.57 3.4057e-09 353762000.0 414623.0 505715.0 464030.0 436936.0 466775.0 613853.0 587683.0 597451.0 815027.0 562904.0 True False 412390.7158369458 522547.41806382657 529361.3905789361 492252.0527999428 526216.0294578187 571418.7869645322 559254.5281229251 642035.8274147063 614174.5166522716 526978.9847936389 0.7825562835270081 0.9915906196305955 1.0045208743688898 0.9341018655472667 0.9985522091813225 1.0843293631306674 1.0612463575600173 1.2183328860184488 1.1654630153663108 1.0 19.00738590472715 2.80235747688215 0.9878412756201249 1.1459567224330325 0.9214567138801948 0.534978974581356 0.0782979011372007 0.384336591192209 0.8012399952083781 0.04165719061795434 0.041343039532246224 634.3916774806428 -2.80235747688215 -0.2245000085528377 VVEAVNS(ph)DSDSEFGIPK ddPTM_BT-474_Trastuzumab_2h_R1 3 VVEAVNSDSDSEFGIPK 17 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 VVEAVNS(0.979)DS(0.02)DS(0.001)EFGIPK;VVEAVNS(0.762)DS(0.238)DSEFGIPK;VVEAVNS(0.689)DS(0.301)DS(0.01)EFGIPK 308.39 4.9888e-58 330192000.0 132684.0 181006.0 189935.0 151830.0 166824.0 198831.0 231496.0 195494.0 258796.0 201207.0 True False 131969.64408657816 187030.6752895624 216676.1970553849 171051.6624325196 188068.047556684 185086.28096782925 220297.65407940117 210082.75497841742 195019.1934887324 188365.79699802064 0.700603008559802 0.992912079954344 1.15029480143713 0.9080823862854307 0.9984193019853824 0.9825896416310342 1.1695204627924891 1.1152914081351244 1.0353216804576346 1.0 17.52317750212108 4.716293988378432 3.706685887936787 1.0513698477473494 0.6706739794917144 0.639234068310818 0.07692562127920377 0.1548654076719305 4.011703542747035 0.019700044439068608 0.15626891065613607 52034.81182854515 -4.716293988378432 -0.38069586825563506 VVEAVNSDS(ph)DSEFGIPK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVEAVNSDSDSEFGIPK 17 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 VVEAVNS(0.313)DS(0.687)DS(0.001)EFGIPK 240.42 2.1376999999999998e-19 0.0 60142.0 68139.0 67937.0 62785.0 57727.0 79142.0 73742.0 66956.0 106640.0 71142.0 True False 59818.202154404345 70406.96542410475 77501.93908101023 70733.57456250899 65078.191275264275 73671.0998202289 70174.81773820364 71952.5967156789 80360.00090278992 66601.65665226943 0.8981488623731713 1.0571353471236162 1.1636638332534537 1.0620392662574822 0.9771257134794822 1.1061451549902037 1.0536497328375758 1.0803424469055927 1.2065766069807164 1.0 16.023270442946412 1.5283623209503652 5.072432952636631 1.1150785058961092 1.0514735600666387 0.06912883958608573 0.08157602132452886 0.36925018610330557 20.7116112444191 0.04677235475277377 0.020495036395546222 33.75688163783885 -1.5283623209503652 -0.06360494582947052 VVECVMLCHGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVECVMLCHGAK 12 0 E7EPM6;P33121-2;P33121;B7Z3Z9;D6RER0 E7EPM6 ACSL1 Long-chain-fatty-acid--CoA ligase 1 0 156.71 7.3411e-05 372820000.0 437480.0 464120.0 439530.0 389850.0 378440.0 481040.0 500340.0 450620.0 663140.0 558460.0 False True 435124.6562885975 479567.9536335352 501412.00353675295 439204.97002777894 426632.0908103841 447786.83704635873 476136.64271558786 484247.55260199605 499718.03262074455 522818.604678339 0.8322669705993063 0.9172740781261725 0.9590553952173215 0.8400714245775496 0.8160231617481687 0.8564860413141895 0.9107109778706672 0.9262247905273503 0.9558153213162586 1.0 18.99595095527865 1.3985622161610438 1.2467741679732922 0.9940355937011472 0.873920571833007 0.5262735290733385 0.0406078830433086 0.36844996867805785 1.1056407664576704 0.04024074115547958 0.013349426797163791 25.03584281183428 -1.3985622161610438 -0.12011502186814027 VVEEIRR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVEEIRR 7 1 P51659-3;P51659;P51659-2;A0A2R8YD50;E7ER27;A0A2R8YDT8;A0A2R8YF45 P51659-3 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 ; 127.84 0.0061177 1007070000.0 560340.0 740670.0 646940.0 690840.0 644270.0 706220.0 686800.0 629230.0 837220.0 657380.0 False True 557323.1916996266 765322.7532055307 738023.5286967161 778300.2731665788 726313.9656125305 657400.6736630619 653576.8601692154 676186.3377651986 630898.3491732352 615425.4455886672 0.905590101440371 1.2435669644330087 1.1992086677384315 1.2646540352619293 1.1801818901358492 1.0682052202671675 1.061991935585399 1.09872989914873 1.0251418001895711 1.0 19.231224569498675 2.72126787981754 7.75520417156275 1.0610390113052524 1.1715513722396562 0.23167557060378385 0.09587075175244145 0.28116791942632785 96.82310982655756 0.03017076288337408 0.029219449441173488 526.3418223815092 -2.72126787981754 0.11051236093440386 VVEELEDRPELQHVYLHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVEELEDRPELQHVYLHK 18 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 0 224.86 2.8201e-19 70786000.0 70688.0 75390.0 76806.0 69385.0 70629.0 82772.0 73669.0 29180.0 90572.0 64684.0 False True 70307.42366217513 77899.31057578255 87619.61719028035 78169.13388579573 79623.18449911891 77050.16646432986 70105.34902709074 31357.55977303765 68251.74420262096 60555.81174124143 1.1610351119163083 1.2864051911094996 1.4469233368497174 1.2908609700389628 1.314872713445796 1.2723826871245618 1.1576981137112825 0.5178290715849102 1.1270882552819985 1.0 15.885977806321367 1.9564220297007917 8.39372921728381 0.8293527212549499 1.295597966351629 0.5654027528400092 0.1602718259275303 0.208726560706012 37.54950678316457 0.06473072417357281 0.04118725761442934 90.45280303040099 -1.9564220297007917 0.4662452450966792 VVEELTR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVEELTR 7 0 Q16531;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 ;;; 155.51 0.0037367 653540000.0 618440.0 776890.0 777610.0 760230.0 746210.0 806590.0 765720.0 655400.0 802670.0 790360.0 False True 615110.3877551435 802748.3140100781 887090.7288927138 856475.0400518618 841235.420366813 750832.3318086276 728679.198265539 704309.2760537654 604862.733726954 739918.5481387605 0.8313217573777983 1.0849144355542426 1.198903218636916 1.1575261117677007 1.1369297640705338 1.014749979842133 0.9848100173978694 0.9518740648216362 0.8174720518203865 1.0 19.497006938875785 2.17144361264248 1.676033565810578 0.9180950806973808 1.0907755654742721 0.3043193748847035 0.10272473002776625 0.4483305598260134 2.457466608027677 0.05951525341969731 0.03436707729261504 148.40331856004627 -2.17144361264248 0.17268048477689135 VVEHNIR ddPTM_BT-474_Trastuzumab_2h_R1 3 VVEHNIR 7 0 O00232-2;O00232 O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 0 ;; 166.86 0.0011078 723500000.0 672740.0 838030.0 763930.0 802720.0 727050.0 802570.0 795000.0 686990.0 918240.0 790870.0 False True 669118.0425884401 865923.3219501678 871484.7038014068 904344.2696952646 819635.5079370294 747090.2249465665 756542.8128050767 738256.6822645362 691952.0557856133 740395.9995021272 0.9037299540224187 1.1695407897023353 1.1770521509941019 1.2214332199301225 1.1070231450307486 1.0090414122293216 1.021808347578603 0.9971105769898412 0.9345702249214074 1.0 19.497937574515593 2.74285798246293 3.610010571494154 0.9932023275494606 1.1298536289994237 0.3571070101754068 0.08231359056119537 0.25524366908377255 7.308954687572141 0.027268594030629957 0.02735189470331202 553.1691891826408 -2.74285798246293 0.13665130144996307 VVEHPEFLK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVEHPEFLK 9 0 P06396-2;Q5T0I0 P06396-2 GSN Gelsolin 0 ;;; 134.25 0.00025426 5822020000.0 10669490.0 10813910.0 9280420.0 8355770.0 6675300.0 9318270.0 9195700.0 8356570.0 13290300.0 10446300.0 False True 10612046.651331786 11173844.457203366 10587022.469143298 9413609.625263594 7525359.887397082 8674119.927748157 8750868.860014636 8980179.687202647 10015083.645896012 9779608.190472616 1.0851198171384964 1.1425656569850138 1.0825610047913037 0.9625753345041388 0.7694950289244058 0.8869598616638409 0.8948077151536411 0.9182555693745708 1.024078209559847 1.0 23.221345235627933 3.6987966865538127 3.447574665695794 0.9070166935313468 1.1116709010231516 0.6103852786675559 0.06681155303124328 0.14802833058067602 3.638836969076284 0.018335095294918582 0.0315603965470561 4998.005003398751 -3.6987966865538127 0.20465420749180474 VVESLR ddPTM_BT-474_Trastuzumab_2h_R1 7 VVESLR 6 0 Q12905;B4DY09;X6R6Z1 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 ;;;;;; 132.94 0.034151 2930280000.0 1503860.0 1981980.0 1765800.0 1928650.0 1896480.0 1733720.0 1749980.0 1603980.0 1914840.0 1690870.0 False True 1495763.3848545547 2047949.006167791 2014409.2913912584 2172816.8922510594 2137985.4866823717 1613872.0171378967 1665326.7818272065 1723677.1324454078 1442953.339541434 1582957.2289733612 0.9449171193492343 1.2937487941452492 1.272560783400142 1.3726314599543894 1.3506274506664835 1.0195297684603806 1.0520352359155445 1.0888968450292946 0.9115554818099996 1.0 20.594190844141245 2.7251106881907687 24.67602063227884 1.0286859240748014 1.257910990910088 0.48809742437854675 0.11832923121988172 592.2911070640755 1086650.0485733538 0.03863105386201001 0.036620902657778454 531.0197674508568 -2.7251106881907687 0.22922506683528665 VVESPDFSKDEDYLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVESPDFSKDEDYLGK 16 1 Q9Y6Y8 Q9Y6Y8 SEC23IP SEC23-interacting protein 0 ; 223.07 8.2611e-15 278860000.0 559760.0 440120.0 396070.0 367870.0 388230.0 558080.0 525590.0 480950.0 794260.0 523130.0 False True 556746.3143551827 454769.1281418419 451833.2132978457 414442.3042814388 437668.7892805074 519501.2431790125 500165.20375122 516840.9312146149 598525.2655387283 489743.39552587457 1.1368122968914405 0.9285865461310037 0.9225917438104053 0.8462437841278507 0.8936696100016812 1.0607621213986658 1.0212801404175236 1.055330068636543 1.2221201368035732 1.0 18.901666511480332 2.6973893578121726 9.259128778135027 1.0695289568801365 0.9378713789377373 0.32825117735044096 0.0899834670664428 0.5630472470798309 122.84073948712405 0.0295311553709074 0.027931159807168888 498.1835210476005 -2.6973893578121726 -0.13165757794239918 VVETDPSPYCIVAPDTVIHCEGEPIKR ddPTM_BT-474_Trastuzumab_2h_R1 6 VVETDPSPYCIVAPDTVIHCEGEPIKR 27 1 P55072;C9IZA5 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ;;;;; 222.69 1.4788999999999995e-34 11005180000.0 13868720.0 13397100.0 10598210.0 11566590.0 11413690.0 12955990.0 10462590.0 12324780.0 17411260.0 14820120.0 False True 13794052.352479635 13843014.37478202 12090345.846707292 13030919.108050821 12867155.767259182 12060372.906419946 9956474.550724871 13244517.667564726 13120488.27193089 13874287.253456924 0.9942170073668254 0.9977459830473734 0.8714210413724032 0.9392135876964801 0.9274102180674684 0.8692607184859156 0.7176206149432369 0.9546088693143293 0.9456693545581437 1.0 23.725910323795734 4.246585680233394 24.881551666622325 0.8958150269460344 0.9959815574166397 0.20209562313823815 0.07262096600154283 243.73737235545008 755684.0734663334 0.017908737595507297 0.04722835251314988 17643.53812498745 -4.246585680233394 0.10016653047060531 VVEVGSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVEVGSK 7 0 P14618;P14618-3;B4DNK4;P14618-2;H3BTN5;H3BQ34 P14618;P14618-2 PKM Pyruvate kinase PKM;Pyruvate kinase 0 98.997 0.025247 257310000.0 443750.0 486960.0 423310.0 413570.0 414070.0 496600.0 522350.0 451540.0 594960.0 532080.0 False True 441360.89930525975 503168.1692264643 482908.36852352053 465927.91959571274 466799.3601148277 462271.21087065834 497081.93492922175 485236.20767366065 448340.08005555015 498122.1988633939 0.8860494479313489 1.0101299849205359 0.9694576343423601 0.9353687120527021 0.9371181633341416 0.9280277247740821 0.9979116290409344 0.9741308634324343 0.9000604291046741 1.0 18.92614018072235 2.25814179671224 24.99877056885313 0.9678994327635634 0.947751348509457 0.07648617143420877 0.039238934601810514 778.3673834770293 993719.1817669477 0.013455809805157893 0.011241244406334571 181.1931589897345 -2.25814179671224 -0.020148084254106413 VVEVLAGHGHLYSR ddPTM_BT-474_Trastuzumab_2h_R1 5 VVEVLAGHGHLYSR 14 0 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 186.56 6.062699999999999e-07 12391330000.0 1720970.0 2142063.0 1989843.0 1996014.0 1785962.0 2212486.0 2157223.0 1168176.0 2298753.0 1979343.0 False True 1711704.488737743 2213360.2720505698 2269995.598374589 2248709.167744075 2013393.6744738761 2059542.0504518345 2052869.8820978673 1255351.2249975328 1732256.1248620683 1853019.635139203 0.9237379120427702 1.1944613160476831 1.2250251186378076 1.2135376901039405 1.086547404190148 1.111451822418016 1.1078511221191951 0.6774624516610845 0.9348288016019525 1.0 20.821446737989877 1.8355944556028851 8.410668792958395 0.8421120380747872 1.1324879441304383 0.5099808136485586 0.11224998453687857 0.20908776652810454 16.39162216209767 0.04660681938090102 0.029082289036946485 68.48484159896253 -1.8355944556028851 0.2903759060556511 VVFVFGPDKK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVFVFGPDKK 10 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 141.93 0.0083371 0.0 2125200.0 2063700.0 2296100.0 1514400.0 1142300.0 1889900.0 2412800.0 1740800.0 3675200.0 2027200.0 False True 2113758.1593319178 2132389.0069670035 2619370.921941027 1706122.8847250687 1287765.1340574487 1759255.6613460688 2296083.6462089187 1870707.3356032865 2769496.2051569205 1897822.3604267605 1.113780827651646 1.1235977884081292 1.3801981558231893 0.8989897686427382 0.678548825701406 0.9269864756733437 1.209851719574324 0.985712559094637 1.459302125902947 1.0 20.855913529162056 -0.3260113837821116 7.960478369114287 1.000017729318329 1.0727301314102238 0.010366491972755965 0.2194145364176057 0.0 0.0 0.21566399036326442 0.05083249001453818 0.47205066764937476 0.3260113837821116 0.07271240209189478 VVGAMQLYSVDRK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVGAMQLYSVDRK 13 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 179.67 2.1724e-05 1769900000.0 869820.0 1036830.0 1016030.0 1020750.0 806640.0 1050560.0 1234000.0 941790.0 1386250.0 1134320.0 False True 865136.9857660875 1071340.2597730295 1159078.1925089257 1149976.845340144 909360.8226701411 977937.259952234 1174306.7056622189 1012071.1521127188 1044627.2622983181 1061926.72645979 0.8146861400223417 1.0088645789569888 1.09148603536236 1.0829154372768184 0.8563310443289556 0.9209084163579188 1.105826491039619 0.95305177550877 0.9837093617380324 1.0 20.018252792132834 4.740249075294378 24.42814990530615 1.0000673424319235 0.8146860539439428 0.3569382383188566 0.07475820015855388 125.55980743661898 1816346.5759306648 0.018423242443036607 0.11744293242597928 54985.613531914874 -4.740249075294378 -0.18538128848798074 VVGSELVDTYTVYIIQVTDGSHEWTVK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVGSELVDTYTVYIIQVTDGSHEWTVK 27 0 Q9Y2I1;C9J715;Q9Y2I1-4;Q9Y2I1-3 Q9Y2I1 NISCH Nischarin 0 259.33 6.5876e-61 0.0 59407.0 60660.0 56117.0 58169.0 52043.0 55119.0 60278.0 51476.0 74215.0 62812.0 False True 59087.1593127382 62679.03143025563 64017.785822291975 65533.189435798064 58670.36756697178 51308.75326616964 57362.12285567851 55317.400509831634 55925.7076800503 58803.28438394129 1.0048275352605038 1.0659103838657824 1.0886770440287639 1.1144477748541315 0.9977396361723324 0.8725491068009401 0.9754918191498783 0.9407195718635467 0.9510643540741266 1.0 15.843609116789564 3.0230165662007638 6.67662921883028 0.9451705101713227 1.0686739865985697 0.6702907415752499 0.03981290194187649 0.09221020465226078 15.376896573147027 0.011396879293880587 0.013432235995767296 1054.427116838177 -3.0230165662007638 0.12350347642724702 VVHIIQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVHIIQSR 8 0 O60885;O60885-2;O60885-3;Q58F21-5;Q58F21-4;Q58F21;Q58F21-3;Q58F21-2;Q15059 O60885;Q15059 BRD4;BRDT;BRD3 Bromodomain-containing protein 4;Bromodomain testis-specific protein;Bromodomain-containing protein 3 0 ; 119.27 0.0017256 584370000.0 659970.0 830920.0 724230.0 720580.0 640350.0 670390.0 708860.0 646660.0 904540.0 772540.0 False True 656416.7948495606 858576.6698982532 826195.2888799926 811805.354117268 721894.7768481906 624047.5172283147 674569.7336918317 694917.0528729445 681628.2372150192 723235.8357952294 0.9076109926547011 1.1871323673476586 1.1423594462400424 1.1224628453658585 0.9981457515229949 0.8628548066097238 0.9327106046261007 0.9608443311010064 0.9424702199187063 1.0 19.4641066384222 3.075169562576792 4.406844501972584 0.9378765998278359 1.0996369183365167 0.46378147627716393 0.07563329515177801 0.17218176835773555 6.402490151111855 0.02181406839792079 0.026184914245160153 1188.96634764751 -3.075169562576792 0.16176031850868078 VVIEACDELGIILAHTNLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVIEACDELGIILAHTNLR 19 0 P31939-2;P31939 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 ;;; 286.68 3.3512e-40 762836000.0 336921.0 357300.7 308564.0 326860.0 303865.0 361620.0 356313.0 315833.0 395506.0 394793.0 False True 335107.054771442 369193.2378066661 352007.1291136323 368240.4424862894 342560.4066010387 336622.06056191644 339076.77894215746 339402.0622274775 298038.84580887895 369596.97274070734 0.906682358046634 0.9989076346295606 0.9524080419364926 0.9963297040980647 0.9268485184302733 0.9107814332615635 0.9174230417196586 0.9183031443971993 0.8063887634111376 1.0 18.495593414551564 3.0467721359657243 6.133966362564567 0.9082746626456626 0.9652759371984718 0.20186067384861217 0.04968678467980273 0.2774029560742303 24.715111213192383 0.013679684588743905 0.01630315666444284 1113.7100429745226 -3.0467721359657243 0.057001274552809233 VVIGMDVAASEFFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVIGMDVAASEFFR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 128.88 0.00016554 83248000.0 106030.0 151060.0 146320.0 162780.0 158730.0 155140.0 167990.0 139250.0 165430.0 196110.0 False True 105459.14626104053 156087.94078230148 166920.58416376062 183387.9313097905 178943.32463358028 144415.53696027782 159863.6819158802 149641.5420971725 124661.99314842987 183594.09190178188 0.5744147056619799 0.8501795409941868 0.909182765276885 0.9988770848241583 0.9746682084372865 0.7866023109149745 0.8707452416355705 0.8150673071616427 0.6790087407339929 1.0 17.486160107692104 1.1586567832050902 0.012713456074947506 1.734750743956557 2.143597600881144e-06 0.07826367343197971 0.1267854295785477 3323.844673747461 33.531273512238386 2311.4633301494036 2258.288509948037 14.409761183507733 -1.1586567832050902 -1.734748600358956 VVIIESVLCPSHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVIIESVLCPSHFR 14 0 Q9NZ32;G3V2Q5;G3V5Y4;F6S9Y6;V9GYX7 Q9NZ32 ACTR10 Actin-related protein 10 0 139.46 1.0214e-05 79281000.0 82319.0 102720.0 91039.0 95218.0 92592.0 98356.0 92496.0 89102.0 105180.0 101570.0 False True 81875.80365050067 106138.97310444879 103856.49987482661 107272.58903707848 104383.04236421912 91556.88122511975 88021.61511096638 95751.24369078816 79259.79833979228 95087.7156415481 0.8610555327582762 1.1162217157951357 1.0922178451140225 1.1281435074270125 1.0977552847910617 0.9628676071077517 0.9256886077985217 1.006978062778807 0.8335440367352784 1.0 16.536971351258234 2.671564298967319 5.984594650015804 0.9486176173254701 1.0677984159229499 0.31143537213909367 0.08376086950703265 0.2719122748399821 18.701660645629474 0.026718208923273905 0.025244941529511802 469.4229290415267 -2.671564298967319 0.11918079859747976 VVIVDPETGKEMSVYEAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVIVDPETGKEMSVYEAYR 19 1 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ; 152.18 5.3158000000000005e-08 736550000.0 1082160.0 1138420.0 1012880.0 1006640.0 1011630.0 1174160.0 1172810.0 1127480.0 1380100.0 1182380.0 False True 1076333.7707992792 1176311.621510578 1155484.6998892156 1134080.5207868766 1140455.0840992187 1092993.082875338 1116076.6997307178 1211618.2828274346 1039992.8473925405 1106919.4961135539 0.9723686090798269 1.062689405725225 1.0438741967651455 1.0245374887412195 1.030296320647897 0.9874187659652647 1.0082726915998095 1.0945857283040754 0.9395379257877416 1.0 20.07811887113556 VVKPKS(ph)PEPEATLTFPFLDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVKPKSPEPEATLTFPFLDK 20 2 Q9UPQ0-4;Q9UPQ0-5;Q9UPQ0-10;Q9UPQ0-2;E7EPK0;Q9UPQ0-9;Q9UPQ0-8;Q9UPQ0;E9PDJ9;Q9UPQ0-6;Q9UPQ0-3;G5EA03;H0Y8P3 Q9UPQ0-4 LIMCH1 LIM and calponin homology domains-containing protein 1 1 VVKPKS(0.999)PEPEAT(0.001)LTFPFLDK 97.713 0.00047094 195170000.0 192970.0 176160.0 152850.0 169680.0 164530.0 225540.0 252170.0 190060.0 417180.0 228390.0 True False 191931.0709609824 182023.37910903146 174369.95140398337 191161.4706023176 185481.92025428702 209948.9506640522 239971.5737170515 204243.2423051246 314371.57892559964 213813.95466548353 0.8976545579602727 0.8513166476613321 0.8155218478456603 0.894055165395513 0.8674921173619253 0.9819235184743754 1.1223382219953424 0.9552381303861456 1.470304309264756 1.0 17.705996488719272 2.253429167317808 1.041027346982939 1.1628996083713754 0.8540508079445174 0.4938378043954268 0.1295936920435326 0.44909131451521583 0.9331880130952707 0.0872162480706594 0.04988681791135119 179.23761950535473 -2.253429167317808 -0.30884880042685803 VVLDDKDYFLFR ddPTM_BT-474_Trastuzumab_2h_R1 3 VVLDDKDYFLFR 12 1 P61604;B8ZZ54 P61604 HSPE1 10 kDa heat shock protein, mitochondrial 0 ;; 143.55 5.6817e-05 11261443000.0 4839561.0 4896426.0 4486183.0 3675679.0 3853481.0 7194522.0 4514617.0 4182927.0 7355438.0 5123292.0 False True 4813505.341301772 5059400.579457984 5117798.57179834 4141019.5845241384 4344198.963978666 6697181.628223104 4296227.728198257 4495078.253212921 5542788.862719578 4796319.118289044 1.0035832109142184 1.0548507000223928 1.0670262852785273 0.8633744924798361 0.9057360148146982 1.3963169386886294 0.8957343375706868 0.9371933231199215 1.1556338779845026 1.0 22.193496219539387 VVLEHEEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVLEHEEVR 9 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 171.56 5.6853e-05 736990000.0 362930.0 453570.0 385420.0 432120.0 441770.0 413120.0 432240.0 386290.0 459110.0 430240.0 False True 360976.0252053137 468666.8032611454 439683.78586930485 486826.3476937383 498026.7909240654 384561.9867798762 411330.8998828501 415116.92134087445 345968.4922588139 402781.71485300397 0.8962075781842596 1.163575172304399 1.0916180393883281 1.2086604970918469 1.236468222262327 0.9547652552207414 1.0212253553589596 1.0306250408918693 0.8589478605926185 1.0 18.619638665006757 2.715332908410664 24.896814883427503 0.9836161661975271 1.1251912452381347 0.3576770141345075 0.09728873340292775 878.3355900408759 941450.345690169 0.03150222431356963 0.029718423192986596 519.1978775317065 -2.715332908410664 0.14157507904060762 VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_BT-474_Trastuzumab_2h_R1 11 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.008)S(0.044)T(0.178)T(0.72)PGGT(0.076)LFS(0.13)T(0.131)T(0.597)PGGT(0.116)R;VVLGDGVQLPPGDYS(0.009)T(0.04)T(0.939)PGGT(0.012)LFS(0.007)T(0.03)T(0.933)PGGT(0.03)R;VVLGDGVQLPPGDY(0.001)S(0.017)T(0.061)T(0.828)PGGT(0.083)LFS(0.057)T(0.047)T(0.714)PGGT(0.191)R;VVLGDGVQLPPGDYS(0.003)T(0.051)T(0.934)PGGT(0.012)LFS(0.009)T(0.036)T(0.947)PGGT(0.009)R;VVLGDGVQLPPGDYS(0.011)T(0.038)T(0.943)PGGT(0.008)LFS(0.036)T(0.027)T(0.9)PGGT(0.037)R;VVLGDGVQLPPGDYST(0.001)T(0.999)PGGTLFS(0.004)T(0.007)T(0.959)PGGT(0.03)R;VVLGDGVQLPPGDYS(0.008)T(0.038)T(0.946)PGGT(0.008)LFS(0.163)T(0.119)T(0.599)PGGT(0.119)R;VVLGDGVQLPPGDYS(0.006)T(0.072)T(0.904)PGGT(0.017)LFS(0.001)T(0.009)T(0.977)PGGT(0.013)R;VVLGDGVQLPPGDY(0.008)S(0.048)T(0.208)T(0.566)PGGT(0.168)LFS(0.179)T(0.142)T(0.646)PGGT(0.034)R;VVLGDGVQLPPGDYS(0.002)T(0.007)T(0.988)PGGT(0.002)LFS(0.013)T(0.023)T(0.93)PGGT(0.033)R;VVLGDGVQLPPGDYS(0.004)T(0.014)T(0.961)PGGT(0.022)LFS(0.013)T(0.046)T(0.893)PGGT(0.046)R 168.63 1.7267e-12 3343842500.0 3487089.0 3990405.0 3726343.0 3841762.0 3940898.0 4122331.0 3860235.0 3786707.0 4646757.0 4201137.0 True False 3468314.900276011 4123223.218174242 4250979.704446013 4328128.675295264 4442748.000767515 3837363.960893386 3673500.6855202527 4069290.3048485294 3501626.0007037306 3933016.839885656 0.8818459318818591 1.048361445178586 1.080844521522466 1.1004602450217569 1.1296030964608528 0.9756795145084987 0.934016007322016 1.0346485841557789 0.8903155372214305 1.0 21.907204932764294 2.55964449518752 15.077619619576822 0.9712675682521559 1.0529311213246098 0.2426268681689705 0.07140826995594265 3.913668634755975 712.6104316329465 0.023471271423411995 0.022127977654675193 362.78096791764176 -2.55964449518752 0.08166355307245388 VVLIGGKPDR ddPTM_BT-474_Trastuzumab_2h_R1 3 VVLIGGKPDR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;; 151.22 1.8417e-05 37269470000.0 22334630.0 24368720.0 20981900.0 21086590.0 19748710.0 23531950.0 24574770.0 23328820.0 29095180.0 23293300.0 False True 22214382.83369065 25179818.1139977 23935969.142055858 23756150.13194319 22263591.158725113 21905241.684751898 23385994.490362044 25069735.009747628 21925062.74443769 21806701.651602544 1.0186952244590437 1.154682561181703 1.0976428037798571 1.089396760293521 1.0209517933716947 1.0045187958602677 1.0724223618954973 1.149634429373013 1.0054277393585769 1.0 24.378268237457984 -4.999999999649022 0.27711948081448423 0.4629933048904262 1.0798776360538527 0.1324578076540449 0.05293859415555156 460.52434037729756 4.429425970090425 142.03557460405892 0.064588521375465 1.0000000008081566e-05 4.999999999649022 0.6168843311634264 VVLLGEFLHPCEDDIVCK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVLLGEFLHPCEDDIVCK 18 0 Q9NY12-2;Q9NY12 Q9NY12-2 GAR1 H/ACA ribonucleoprotein complex subunit 1 0 ; 238.62 6.895e-24 1079380000.0 787750.0 897220.0 782320.0 843140.0 805910.0 982210.0 847770.0 853220.0 1255430.0 945960.0 False True 783508.8415272527 927083.425319056 892463.8559526617 949881.4375509081 908537.8614971897 914312.1345736397 806760.1263040993 916891.6089633708 946046.0984001274 885588.0229228984 0.8847328794502757 1.0468563274593545 1.0077641441074028 1.0725996885276385 1.025914802346293 1.032435072412042 0.9109880728076851 1.0353477974297285 1.0682688495240553 1.0 19.75627618505381 4.745502234714552 24.701032930089458 1.0204143997744803 0.8847328047295973 0.47652884636631976 0.043198593764484795 620.0636565039931 2206365.6575023 0.010380059955861888 0.10183268978710315 55654.749803305735 -4.745502234714552 -0.13568159504488309 VVLNSRPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVLNSRPGK 9 1 G3V3Y1;Q8N8N7;Q8N8N7-2 G3V3Y1 PTGR2 Prostaglandin reductase 2 0 73.985 0.038644 346870000.0 425770.0 758660.0 705920.0 801500.0 781110.0 587390.0 601940.0 555440.0 508550.0 555260.0 False True 423477.7016274943 783911.5394803461 805307.4000333649 902969.8178203542 880579.7284983054 546785.1118673311 572821.8625658961 596889.7532671709 383224.66672087257 519822.831417997 0.814657756513526 1.5080359924591147 1.5491959016817514 1.737072254708765 1.6939997154342352 1.0518682112822653 1.1019559510368675 1.1482561311109538 0.7372216908508894 1.0 18.987660475022896 2.7160666935267836 21.528562841294097 1.0356373954537048 1.483510381834186 0.4307715805461242 0.2585625413903114 138.11007901599376 132181.76541634003 0.08568918676697478 0.08089735214581982 520.075857161253 -2.7160666935267836 0.4478729863804811 VVMALGDYMGASCHACIGGTNVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVMALGDYMGASCHACIGGTNVR 23 0 P60842;J3KT12;P60842-2;J3QS69;J3QL43;J3KTB5;J3QR64;J3QLN6;J3KS25;J3QKZ9 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 170.14 7.6802e-12 389700000.0 98711.0 138500.0 132720.0 152460.0 156070.0 151850.0 157210.0 124210.0 166920.0 168240.0 False True 98179.55094382301 143109.88877498187 151405.8223770799 171761.42036792389 175944.58940063568 141352.9669164508 149605.15169947944 133479.18092560009 125784.80261340675 157502.7791624893 0.623351228885524 0.908618181443904 0.9612898463263341 1.0905294578372138 1.117088792567404 0.8974633188575206 0.9498572183614474 0.8474719089743487 0.7986195753640614 1.0 17.265017759865664 4.739617522586392 3.2473497239681484 0.9540218830067592 0.576222566187626 0.5357307858560089 0.09281411407692415 0.29319558634515996 4.940275343054814 0.025271660564963935 0.27966796057623555 54905.711352085076 -4.739617522586392 -0.37779931681913315 VVMVNGTPMEDVLHSFAVQQLR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVMVNGTPMEDVLHSFAVQQLR 22 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 0 198.31 1.9012e-22 185590000.0 164280.0 174480.0 182050.0 199110.0 198460.0 247000.0 219500.0 177240.0 245450.0 209170.0 False True 163395.53473322385 180287.46132461258 207681.0575930336 224317.30558479184 223732.70463542087 229925.47137545864 208881.94642857165 190466.54880648362 184962.1363614948 195820.59152055334 0.8344144681846385 0.9206767272260518 1.0605680229049628 1.1455246041438267 1.1425392135634411 1.1741639098834284 1.0667006202289375 0.972658428449759 0.9445489615022492 1.0 17.579172953998423 4.371306253208001 2.9896066889695883 1.0678212444570936 0.8454934987955671 0.528691995094644 0.07220690350979123 0.22167525108488118 3.7699081277577573 0.020891423404268278 0.0783424195962816 23512.903053297927 -4.371306253208001 -0.22232774566152647 VVNDDCTHEADVYIENGIIQQVGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVNDDCTHEADVYIENGIIQQVGR 24 0 Q9BPU6;E9PHT0;E7ESV0;E7EWB4 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 0 158.94 2.2445e-11 134530000.0 66524.0 67842.0 64843.0 74446.0 71776.0 78373.0 72671.0 68064.0 80330.0 85073.0 False True 66165.84217551119 70100.07995864496 73972.3307745402 83870.85596687958 80916.2481503174 72955.25898019763 69155.626099821 73143.28130198878 60533.74786685222 79643.56830534042 0.8307744565366807 0.8801725167548082 0.9287922722264574 1.0530775774050256 1.0159796939295556 0.9160219780773645 0.8683140091700768 0.9183827753870771 0.7600582087780865 1.0 16.281270239747666 -0.5946121890306613 7.649555238845773 1.0000019175780361 0.9140886793169812 0.10243045625370073 0.07990640605466291 0.0 0.0 0.08044372777594053 0.01896076847143073 0.2543242725623046 0.5946121890306613 -0.0859132382610549 VVNGAAASQPPS(ph)KR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVNGAAASQPPSKR 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 VVNGAAASQPPS(1)KR;VVNGAAASQPPS(1)KR 142.3 5.7813e-06 630230000.0 468310.0 223937.0 186144.0 250939.0 210056.0 259686.0 199904.0 263992.0 504140.0 283287.0 True False 465788.67099413206 231390.60767222499 212351.4572073475 282707.8516706444 236805.3865005444 241734.51805509027 190233.87981256106 283692.4235642138 379901.4521299 265207.3811257975 1.7563186552986303 0.8724893202066197 0.8006996498586194 1.0659878713426374 0.892906470005897 0.9114924216246711 0.7173023578945045 1.0697003317175706 1.4324693774254302 1.0 18.016761402848843 4.74251918578816 24.852885013844496 0.9620715865676764 1.7563189905754442 0.6135856450528043 0.1861223114730314 241.89546681128655 1518614.9259064526 0.044594988958414496 0.3407164265514647 55273.782565415604 -4.74251918578816 0.7942474040077677 VVNRCVY(ph)S(ph)T(ph)T(ph)KAAVIGLT(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 VVNRCVYSTTKAAVIGLTK 19 2 D6R9P2 D6R9P2 SLC9B2 5 VVNRCVY(1)S(1)T(1)T(1)KAAVIGLT(1)K 48.984 0.048677 253630000.0 182790.0 136690.0 126850.0 116680.0 123360.0 191900.0 188840.0 102230.0 294420.0 177590.0 True False 181805.87894987804 141239.64401915003 144709.37740003472 131451.67603653012 139069.1647879951 178634.40468401005 179705.0877611456 109858.92171342156 221864.1360258762 166256.05415755167 1.0935293747413892 0.8495308320339723 0.8704006487661595 0.7906579805626845 0.8364757932737111 1.0744535324694289 1.0808934969119923 0.6607814811321958 1.3344725228209005 1.0 17.34304735125543 2.7554597821381464 24.48464654205577 0.9847276226382767 0.8795762992221562 0.11652787534443121 0.17358612617055486 1778.269252171318 2576472.1564654876 0.05358765487780922 0.05669339022604334 569.455487232718 -2.7554597821381464 -0.10515132341612055 VVNSCHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVNSCHR 7 0 P48643;B7ZAR1;E9PCA1;E7ENZ3;P48643-2 P48643 CCT5 T-complex protein 1 subunit epsilon 0 ; 83.265 0.022407 81357000.0 50650.0 87467.0 104687.0 75681.0 66252.0 53606.0 80177.0 56771.0 102202.0 74598.0 False True 50377.306027744016 90378.28622008205 119426.01964428392 85262.20684025227 74688.79949363058 49900.343394950745 76298.53220411645 61007.540297296844 77015.68653663681 69837.09177343907 0.7213545803306756 1.2941301524021274 1.710065763215313 1.2208728152205186 1.0694717892310164 0.7145249340684773 1.0925216137527485 0.8735693132127197 1.1027905741906618 1.0 16.091705861606773 3.154205298299685 3.677394926603389 0.9501285831506492 1.2766268415739064 0.21462700080147556 0.2466600715939869 0.3159458071140977 8.332847051422053 0.07426136949795827 0.09213184566161954 1426.281661577344 -3.154205298299685 0.3264982584232572 VVNTDHGS(ph)PEQLQIPVTDSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 VVNTDHGSPEQLQIPVTDSGR 21 0 Q6IQ49-3;Q6IQ49-2;Q6IQ49 Q6IQ49-3 SDE2 Protein SDE2 homolog 1 VVNT(0.013)DHGS(0.987)PEQLQIPVTDSGR;VVNTDHGS(1)PEQLQIPVTDSGR;VVNT(0.022)DHGS(0.978)PEQLQIPVTDSGR;VVNT(0.015)DHGS(0.985)PEQLQIPVTDSGR;VVNT(0.004)DHGS(0.996)PEQLQIPVTDSGR 268.82 1.3134e-37 5271260000.0 1726960.0 2048600.0 1882910.0 2040350.0 2143280.0 1967910.0 2040900.0 1840690.0 2228490.0 2090280.0 True False 1717662.239243294 2116786.412595147 2148007.3614528873 2298658.1007982036 2416214.0037841615 1831873.0136618558 1942173.8700048833 1978051.6346344326 1679308.499736107 1956876.540821259 0.877757080435145 1.0817168934463168 1.0976713740721808 1.1746566800956724 1.2347299144227712 0.9361208923752841 0.9924866640742674 1.0108208634379596 0.8581576122484137 1.0 20.900121308649442 2.6988073061405276 24.997347391951863 0.9671411050129353 1.097424583652212 0.33074685365928946 0.09475645634929014 670.929848035249 421888.026135786 0.03168833422061361 0.02987633478285867 499.8127218620637 -2.6988073061405276 0.1302834786392768 VVNVANVGAVPSGQDNIHR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVNVANVGAVPSGQDNIHR 19 0 O00203;O00203-3;H0YBD0 O00203 AP3B1 AP-3 complex subunit beta-1 0 123.19 3.1722e-05 411150000.0 107280.0 123870.0 102500.0 123440.0 124650.0 130710.0 120520.0 101870.0 134030.0 125740.0 False True 106702.41639992848 127992.93806900365 116931.10905402865 139067.49134341153 140523.43864156614 121674.32535824363 114689.9871688902 109472.05668537851 101000.10240998636 117715.16554857 0.9064457914379979 1.0873105217372605 0.9933393756795267 1.1813897614239979 1.1937581533076578 1.0336333877731332 0.9743008611882588 0.9299741131503542 0.8580041657275934 1.0 16.844940672912344 2.1783807977275784 2.599034605044991 0.9263215905407397 1.0770486526401744 0.3555573252553569 0.08466145885471069 0.3013763770409862 4.119456526483813 0.03894682531804463 0.02616465168445859 150.79286674634864 -2.1783807977275784 0.15072706209943465 VVPEDGS(ph)PEKR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVPEDGSPEKR 11 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR 144.8 2.2382e-05 5881580000.0 7395900.0 6284600.0 5559890.0 5379430.0 5433960.0 7415800.0 7225700.0 6871700.0 10545900.0 7223100.0 True False 7356081.296161738 6493779.111879072 6342674.184569791 6060465.286434614 6125942.596395703 6903163.200915484 6876165.286145455 7384501.147785561 7947004.252820067 6762115.5739929695 1.0878372627130413 0.9603176758548883 0.9379718691830193 0.8962380515563952 0.905921013825321 1.0208585058003123 1.0168659809056089 1.0920400674880921 1.1752245530058918 1.0 22.689043243437986 2.091564827811897 1.7690349951583848 1.0977803469989997 0.956092827835519 0.41174532254354335 0.06498047567947814 0.32718217339800204 1.9554404973642339 0.03790020895755688 0.020604771342942044 123.47096084365839 -2.091564827811897 -0.14168751916348077 VVPGQFDDADS(ph)SDSENRDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 VVPGQFDDADS(0.79)S(0.21)DSENRDLK 173.47 2.9233e-12 160480000.0 92275.0 89175.0 79492.0 90456.0 91255.0 87471.0 92789.0 90292.0 158290.0 112710.0 True False 91778.20165271626 92143.13596757411 90683.7826431497 101907.72032533748 102875.78333923897 81424.33565458606 88300.44158159767 97030.04753348573 119281.55047733149 105516.75130411416 0.8697974541331218 0.8732559980168892 0.8594254610984585 0.9657966063760345 0.9749711023867333 0.7716721245511969 0.8368381369807656 0.9195700809043243 1.1304513170003239 1.0 16.68711252649681 1.3706178672139742 5.47225452268229 1.06243197083021 0.881094483631271 0.5774381120415926 0.06272215075275678 0.14700961452271963 6.018062860431323 0.0451421955072664 0.016115491325407568 23.47566304064064 -1.3706178672139742 -0.18133748719893894 VVPGQFDDADSS(ph)DSENR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 VVPGQFDDADS(0.063)S(0.937)DSENR;VVPGQFDDADS(0.058)S(0.942)DSENR;VVPGQFDDADS(0.034)S(0.966)DSENR;VVPGQFDDADS(0.133)S(0.867)DSENR 321.84 1.2748999999999995e-58 1606720000.0 1059230.0 1099450.0 974340.0 987340.0 968440.0 1065280.0 994000.0 995490.0 1115880.0 1131370.0 True False 1053527.2233715174 1136044.5286184398 1111518.6028849012 1112337.1427657483 1091765.0936064045 991639.7009993874 945916.422551252 1069778.518795793 840886.3260259319 1059164.9979854105 0.9946771516953293 1.072585037061514 1.0494291304934265 1.050201946704691 1.0307790530115715 0.9362466687301224 0.8930774943945811 1.0100206491250843 0.7939143831464819 1.0 20.014495920914225 2.7584278439917598 4.292123376424455 0.9306394960874501 1.0437969737311295 0.4798050658263866 0.05877947999896358 0.18397017251742132 8.358902614775818 0.017914659503790363 0.018254012903432523 573.3605974353923 -2.7584278439917598 0.11315747764367934 VVPGQFDDADSS(ph)DSENRDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 VVPGQFDDADS(0.022)S(0.978)DSENRDLK 181.32 3.1138e-17 178000000.0 131330.0 135070.0 122250.0 117070.0 121670.0 142420.0 143820.0 120900.0 250570.0 171120.0 True False 130622.93387213482 139565.72329846094 139461.73738395143 131891.04999654237 137163.95330541013 132574.84062061875 136862.87715424673 129922.17191776061 188820.38096597997 160198.97509679713 0.8153793355619687 0.8712023482929966 0.8705532435503059 0.8232952171938038 0.8562099303227844 0.8275636004569503 0.8543305415752502 0.8110050132296892 1.178661604120057 1.0 17.289505392298928 1.246942902483202 24.99999993554252 1.0893308203689371 0.8417326468636858 0.8297953339630928 0.04495199082982345 52.85984196548115 157656.74754866076 0.027755482873154772 0.009769613445369599 17.65805651616443 -1.246942902483202 -0.24759817350525137 VVPGYGHAVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVPGYGHAVLR 11 0 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 CS Citrate synthase, mitochondrial;Citrate synthase 0 ; 200.05 4.8169000000000006e-08 1803320000.0 899450.0 1434910.0 1518450.0 1385210.0 1562880.0 1932770.0 1137840.0 968680.0 1136280.0 1232400.0 False True 894607.4611382898 1482670.1119285866 1732234.5613959979 1560577.4439712178 1761903.5040844844 1799162.159151196 1082798.3322290927 1040967.8204573729 856259.0193719253 1153747.1768892768 0.7753929795523511 1.2850909988149648 1.501398743238041 1.352616478922907 1.5271140327596844 1.5594076372971777 0.9385057263139089 0.9022495060521156 0.7421548121838646 1.0 20.1378956870606 2.144317342496957 6.90502112551478 0.8844154234414576 1.347768690832482 0.49614992378856404 0.21613965354405587 0.18603375236873468 11.615839758981702 0.08418448583147378 0.0620739120037959 139.4175165927509 -2.144317342496957 0.46335326739102434 VVPQQITHTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 4 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 VVPQQITHT(0.296)S(0.703)PR;VVPQQITHT(0.372)S(0.628)PR;VVPQQITHT(0.255)S(0.745)PR;VVPQQITHT(0.291)S(0.709)PR 140.96 8.0235e-05 1114340000.0 1249220.0 1401990.0 1342400.0 1399050.0 1336050.0 1540600.0 1491670.0 1223240.0 1532710.0 1477310.0 True False 1242494.338321389 1448654.389629148 1531398.25165003 1576169.5865521731 1506188.048111227 1434101.948182314 1419512.2233672312 1314524.380286859 1154994.1577617715 1383026.8110112753 0.8983877452186713 1.047452137655875 1.1072802345243509 1.139652227999594 1.0890519519356938 1.0369299689379792 1.0263808424142389 0.9504691954060335 0.8351205837558815 1.0 20.399397693808304 1.7418844766117374 2.4281244352493343 0.9118328459540109 1.0595769585652186 0.3832227622520792 0.07090303132036248 0.2580548036470455 3.1445622579838797 0.045999960827509276 0.020289458628086246 55.193060486943985 -1.7418844766117374 0.14774411261120768 VVPSFLPVDQGGS(ph)LVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVPSFLPVDQGGSLVGR 17 0 Q14126 Q14126 DSG2 Desmoglein-2 1 VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR 193.8 1.1564e-10 146542000.0 100149.0 118811.0 133090.0 114930.0 158951.0 184672.0 112541.0 103388.0 152793.0 130502.0 True False 99609.80891159999 122765.55231223382 151827.91516098214 129480.12621596151 179192.46767361095 171906.05931112848 107096.9618816302 111103.33755362646 115139.2124713053 122173.25063161663 0.8153160237337783 1.0048480471588919 1.2427263281942285 1.059807490973429 1.4667078656515553 1.407067900889933 0.8765991027328456 0.9093916792689035 0.9424257100147009 1.0 16.898568921577894 2.2034519655791267 24.99883042872348 0.9212161213064577 1.1710688957790532 0.28780019985772065 0.17988572402052566 239.6981367025485 170673.75959407166 0.0726243201163938 0.05363875204155321 159.75408259333858 -2.2034519655791267 0.24985277447259546 VVPTTDHIDTEK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVPTTDHIDTEK 12 0 O75663;O75663-2 O75663 TIPRL TIP41-like protein 0 77.124 0.029269 195510000.0 329160.0 357760.0 334550.0 365190.0 326220.0 372310.0 390740.0 336300.0 429490.0 397280.0 False True 327387.83913311403 369667.825329513 381651.73203927145 411423.01655622583 367762.1833425729 346573.0860234696 371838.41342824564 361396.4136967983 323647.9443711483 371925.25027147966 0.880251714273617 0.9939304337623787 1.02615171129331 1.1061981305542326 0.9888067106875158 0.9318353238197601 0.9997665207103561 0.97169098745784 0.8701962131769966 1.0 18.504653171310725 2.992353965403983 24.723796503525307 0.9584993157215151 1.0084176734264123 0.11048667867163331 0.06214468817479317 700.5862125699618 2265389.339583379 0.018831711732515084 0.021588113404905008 982.548428576672 -2.992353965403983 0.049918357704897165 VVQGDIGEANEDVTQIVEILHSGPSK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVQGDIGEANEDVTQIVEILHSGPSK 26 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 178.53 2.4263e-17 15917000.0 28725.0 31302.0 31086.0 31336.0 26695.0 36659.0 32878.0 30889.0 39681.0 40375.0 False True 28570.34779164753 32343.86814754141 35462.638595644254 35303.13438704755 30094.450016338622 34124.84961600379 31287.565533843146 33194.09403116382 29902.149248158377 37798.23293322341 0.7558646416651698 0.8556978894934585 0.9382089014133186 0.9339890160848564 0.7961866913065819 0.9028160040256582 0.8277520694980003 0.8781916892730532 0.7910991315648348 1.0 15.206031169602534 -1.5603895825681335 2.82829282683182 1.0080821834192852 0.8584284422427941 0.35797058394028447 0.058574965037326586 14516809.768443028 15470512.96179055 890560.1710675466 0.013689751502249636 0.02751759138527782 1.5603895825681335 -0.1496537411764911 VVQLHEYSEELEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVQLHEYSEELEK 13 0 G8JLG1;Q14683;H0Y7K8 G8JLG1 SMC1A Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 1A 0 ; 144.68 4.143e-05 830080000.0 1371100.0 1208880.0 1150070.0 1170960.0 1151980.0 1377980.0 1413710.0 1301960.0 1912780.0 1376780.0 False True 1363718.1499435313 1249116.8400166088 1311989.8594123586 1319203.4159387667 1298677.8246795945 1282723.4860160095 1345323.446403353 1399118.8664189212 1441400.9989388464 1288912.721679339 1.058037621171686 0.969124455835241 1.017904344758854 1.0235009661631407 1.007576232925634 0.995198095604747 1.0437661323184986 1.085503186434527 1.1183076826651448 1.0 20.297723144688998 1.9969393403517353 4.058118229110361 1.075646660464524 1.010729022523747 0.3392805181342482 0.03479804004723702 0.19689293773110553 7.375779683097708 0.014378497913386284 0.009073397969058275 99.29773456149721 -1.9969393403517353 -0.06491763794077698 VVQVSAGDSHTAALTDDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVQVSAGDSHTAALTDDGR 19 0 P18754-2;C9JW69;P18754;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754-2 RCC1 Regulator of chromosome condensation 0 ; 233.29 4.1579e-24 1600730000.0 286220.0 400420.0 340190.0 362450.0 330110.0 329040.0 327310.0 317950.0 369240.0 309450.0 False True 284679.0233220313 413747.7376409987 388085.7950155127 408336.13283716456 372147.5517847364 306294.2392768457 311476.764854377 341677.0435173863 278245.7495625108 289700.6360665257 0.9826662004865558 1.4281906427916413 1.3396097443375796 1.4095106534160176 1.2845934922258089 1.0572784493524878 1.0751676940842156 1.179414198589902 0.9604595742020241 1.0 18.144203326628887 2.7693331619040844 6.052184148145048 1.076347832018845 1.3073590880109562 0.4515860826919019 0.12732017553691782 0.17853849417617196 21.412903259232014 0.038595718090127164 0.04016033611223805 587.940208282855 -2.7693331619040844 0.23101125599211114 VVRPDSELGERPPEDNQSFQYDHEAFLGK ddPTM_BT-474_Trastuzumab_2h_R1 3 VVRPDSELGERPPEDNQSFQYDHEAFLGK 29 2 Q15293 Q15293 RCN1 Reticulocalbin-1 0 ;; 134.04 5.0882e-06 1263466000.0 265048.0 308014.0 253248.0 247489.0 299284.0 334764.0 335134.0 310836.0 454752.0 344823.0 False True 263621.01101760106 318266.05979160545 288903.1171289237 278821.0820243813 337396.0434047537 311622.5526296925 318922.28808379394 334032.1607132261 342684.46296460566 322816.1009221773 0.8166290660983894 0.9859051604998205 0.894946430192374 0.8637149176508948 1.0451648552873491 0.9653253097955504 0.9879379844212849 1.0347444249497106 1.0615469983859884 1.0 18.300353011358844 3.092886419718087 0.7888768715330821 1.0303710097764334 0.8856689188622222 0.5201002506615385 0.05364969643290119 0.5480897187007332 0.7589483633239897 0.02993163850632586 0.04371188013275206 1238.4726485709684 -3.092886419718087 -0.14470209091421116 VVS(ph)DADDSDS(ph)DAVSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVSDADDSDSDAVSDK 16 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 VVS(1)DADDS(0.284)DS(0.716)DAVSDK 332.57 1.957999999999999e-71 299350000.0 376170.0 373240.0 322310.0 278760.0 319530.0 424270.0 470390.0 399700.0 544270.0 388220.0 True False 374144.7425164162 385663.06777165557 367688.4464312585 314050.98741809354 360220.2514973098 394941.2135241532 447635.43863569835 429527.6436354745 410141.9513443505 363443.46722813626 1.0294441261247451 1.0611363321866283 1.0116798885821152 0.8640985895640306 0.991131452284976 1.0866647749545202 1.2316508040429686 1.181827938499873 1.128488990247557 1.0 18.47137144823097 2.56404073152328 3.720671898675161 1.1573490806115825 0.9901364314150899 0.4466688417770329 0.0742665845510319 0.19332920533798348 5.00099582144931 0.02587187601125811 0.023715177434193015 366.4719436328516 -2.56404073152328 -0.1672126491964926 VVS(ph)PPEPEKEEAAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVSPPEPEKEEAAK 14 1 Q8N163-2;Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 VVS(1)PPEPEKEEAAK;VVS(1)PPEPEKEEAAK 136.35 1.6717e-05 244190000.0 673320.0 413840.0 351610.0 289450.0 320990.0 539100.0 479030.0 485350.0 786340.0 486320.0 True False 669694.9199328851 427614.4142284368 401113.63175109256 326094.3403220231 361866.17384321213 501833.2859048972 455857.4888276929 521569.2815573625 592557.0434161657 455282.6412405008 1.4709432323362448 0.9392284605082311 0.8810211403144762 0.7162459333690374 0.7948165404620777 1.1022455952582788 1.0012626169660803 1.1455944820040835 1.301514685035291 1.0 18.796402928580527 1.9884012062695875 1.7388602206293222 1.1646630818485342 0.9516347357949962 0.10742974006569894 0.20533383647741782 0.7153869968016664 4.031243824338919 0.13222084658709357 0.06515917498789896 97.36462741350162 -1.9884012062695875 -0.21302834605353793 VVSDDALMHWLDQYNSSADTCTHAYWR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVSDDALMHWLDQYNSSADTCTHAYWR 27 0 A3KN83-3;A3KN83-2;A3KN83 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 0 95.652 0.0027712 84516000.0 50298.0 74187.0 78067.0 78347.0 91889.0 104880.0 78279.0 69383.0 82311.0 115730.0 False True 50027.201156633135 76656.26944801156 89058.15502947173 88265.72216690108 103590.51948122651 97629.89246096397 74492.3457151806 74560.71177973515 62026.556960892165 108344.01231856215 0.46174403260550256 0.707526588757119 0.8219942489079644 0.8146802050063902 0.9561259294758346 0.9011101801722495 0.6875538769613956 0.6881848861246296 0.5724963995104453 1.0 16.725259898869645 4.700593227770264 2.6949761371561682 0.7913530947210635 0.4122510205033981 0.40812625757422893 0.1240682469672759 0.4448555350848991 4.569878234570491 0.03246634610912577 0.3616574458330943 50187.230182861254 -4.700593227770264 -0.3791020742176654 VVSHPTLPVTITAHEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVSHPTLPVTITAHEDR 17 0 Q13033-2;Q13033 Q13033-2 STRN3 Striatin-3 0 227.89 9.3058e-16 335140000.0 134530.0 149430.0 139610.0 158100.0 158850.0 162150.0 170320.0 119160.0 164210.0 148860.0 False True 133805.70542768802 154403.68721765763 159265.8744881263 178115.44378964198 179078.60592228462 150940.95216004277 162080.97091441567 128052.32428221949 123742.64580126716 139359.62735454214 0.960146837127194 1.1079513496749112 1.142840846459363 1.2780993116213055 1.2850106542456101 1.0831038732332199 1.1630410757490661 0.918862418858541 0.8879375479847968 1.0 17.088453145747472 1.7279945467371651 5.763662329522917 0.9278834520561089 1.1525033446783155 0.5206854844533861 0.09196563792538417 0.11865620623932624 10.018451229446764 0.04954249458775512 0.025433873814527743 53.45576471273632 -1.7279945467371651 0.2246198926222066 VVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLR 34 0 P49588;P49588-2;H3BPK7 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ; 264.36 7.115899999999997e-60 530180000.0 208643.0 287300.0 254170.0 315530.0 279410.0 258490.0 260500.0 255060.0 322850.0 289970.0 False True 207519.68927041648 296862.6068234824 289954.92671475565 355476.06564798014 314991.20730718033 240621.19472000928 247898.6197933617 274093.87236843683 243287.94346835837 271463.86634419305 0.7644468196268125 1.0935621407789347 1.0681161018576133 1.3094783863325175 1.1603430377278954 0.8863838784898249 0.9131919585903465 1.0096882360796746 0.8962074649002825 1.0 18.050400652888904 2.736301063543603 24.9478252635805 0.945023507702186 1.092166449205643 0.21190442978333257 0.1318680631078838 311.4149390059981 3438321.467445423 0.04325778734291663 0.04263848394748987 544.8802462455981 -2.736301063543603 0.14714294150345708 VVSISSEHLEPIT(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVSISSEHLEPITPTK 16 0 O00267;O00267-2 O00267 SUPT5H Transcription elongation factor SPT5 1 VVSISSEHLEPIT(0.999)PT(0.001)K;VVSISSEHLEPIT(1)PTK 155.88 7.984100000000002e-07 547310000.0 841160.0 885740.0 836580.0 794170.0 809350.0 1057860.0 1034530.0 982950.0 1303960.0 1126370.0 True False 836631.2880216615 915221.3204588642 954363.1923162865 894711.8405719156 912415.9251067124 984732.6281345866 984485.831611617 1056302.7203189635 982616.5301688121 1054484.1022661256 0.7934034152091147 0.8679327820040336 0.9050522338509651 0.8484830057173423 0.8652723385263908 0.9338525123502189 0.9336184675481786 1.001724651940157 0.9318457509763615 1.0 20.00810591409569 2.4954949125545287 1.2310723244482555 0.9785894741174429 0.8543464369217066 0.7281326212883548 0.03266860483001173 0.24041956199473036 0.73716690830884 0.01769271379825488 0.01302417942258793 312.9643809837242 -2.4954949125545287 -0.12424303719573626 VVSQSQPGS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 3 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R 150.29 2.2905e-05 608580000.0 538900.0 592290.0 583240.0 571880.0 612710.0 650550.0 595670.0 550890.0 702850.0 643410.0 True False 535998.6222774182 612004.014603134 665355.1223870404 644279.9493638227 690734.9866833064 605579.0097299775 566855.1664196219 592000.2091627386 529642.0352074819 602347.0229489855 0.8898502057057788 1.016032272570834 1.1046043178392055 1.0696158938572335 1.1467392721584129 1.0053656557729276 0.9410773936333218 0.9828225036531423 0.8792971742674968 1.0 19.200235363487625 2.4600591377045395 6.563050482587146 0.9545937109762164 1.0510911909878422 0.28896375184286205 0.06950914143971297 0.20528369556939902 36.25021492776342 0.024707798933712805 0.021088653423646565 288.4424247273152 -2.4600591377045395 0.09649748001162584 VVSS(ph)TSEEEEAFTEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVSSTSEEEEAFTEK 15 0 Q8N573-2;Q8N573-3;Q8N573-5;Q8N573-8;Q8N573 Q8N573-2 OXR1 Oxidation resistance protein 1 1 VVSS(0.936)T(0.06)S(0.004)EEEEAFTEK;VVS(0.016)S(0.899)T(0.085)SEEEEAFTEK 342.28 1.5377e-69 271270000.0 761960.0 651800.0 634720.0 549180.0 648230.0 864340.0 699930.0 602860.0 923100.0 765800.0 True False 757857.6920217149 673494.7689785799 724083.0589148602 618706.1316913064 730778.2481397713 804590.2102375064 666071.711907745 647848.4744610513 695614.3739062768 716925.988365635 1.0570933462035477 0.9394202189739772 1.0099829977785308 0.8629986103611073 1.0193217431072836 1.1222779244922034 0.9290662114595375 0.9036476358430545 0.9702736198642457 1.0 19.45146466487141 VVSSIEQK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVSSIEQK 8 0 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4 P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;; 193.28 0.00039898 1282930000.0 1346250.0 1300070.0 1263690.0 1172000.0 1156430.0 1458710.0 1407170.0 1285020.0 1798930.0 1427940.0 False True 1339001.9395824354 1343342.04404109 1441606.5678096155 1320375.0798321315 1303694.5058023771 1357872.8111339903 1339099.8111885765 1380914.7175993426 1355607.8059270068 1336807.6466790605 1.0016414425133084 1.0048880610297692 1.0783949144747187 0.9877076055872726 0.9752296892085079 1.0157578126570868 1.0017146554444165 1.0329943287127765 1.014063473750057 1.0 20.350360460225506 VVSVLTVLHQDWLNGK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVSVLTVLHQDWLNGK 16 0 A0A0A0MS08;P01857;A0A4W9A917;A0A286YFJ8;A0A286YES1;P01861;P01860 A0A0A0MS08 IGHG1;IGHG4;IGHG3 Ig gamma-1 chain C region;Ig gamma-4 chain C region;Ig gamma-3 chain C region 0 ; 210.34 9.9439e-12 356730000.0 2398500.0 791320.0 276060.0 189294.0 128216.0 115749.0 76230.0 58610.0 62515.0 52061.0 False True 2385586.742498399 817658.6078369579 314926.8484434647 213258.6009912487 144543.5476042282 107747.54407383797 72542.46367312067 62983.77581554959 47109.015908082445 48738.42240833549 48.94673698117902 16.77646849105066 6.461572469559547 4.375574556036023 2.965700169636751 2.210731056723954 1.488404016554998 1.2922817913116897 0.9665683372637359 1.0 15.572771933431678 5.231889286447976 1.1110654062478886 1.735486588559465 135.46826348046318 0.9961064988461332 0.884573726478171 0.2620975983062403 0.12567653548015123 0.2928081922427736 53.39873312107579 170564.75173317463 -5.231889286447976 133.7327768919037 up VVTATLWGEDADKFDGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVTATLWGEDADKFDGSR 18 1 P27694;I3L4R8 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed 0 ; 291.67 3.144099999999999e-49 1084090000.0 779410.0 757870.0 723080.0 623400.0 641560.0 854170.0 874100.0 786860.0 1093970.0 927190.0 False True 775213.7431605915 783095.2448079112 824883.3788759708 702322.3760813582 723258.8631759587 795123.2383999008 831816.4436137325 845579.4887941191 824375.7519469718 868015.9403927032 0.8930869896350906 0.9021668939093762 0.9503090214020511 0.8091123024349267 0.833232236321312 0.9160237749092205 0.958296276491658 0.9741520281431312 0.9497242084909316 1.0 19.72736201124751 2.350301629580792 3.1858356104175285 0.9696955336963765 0.8788770299571206 0.5707382883325423 0.037901376737019904 0.20086508831289693 4.075693693464385 0.01535917111689284 0.012272694100731002 224.02765326522237 -2.350301629580792 -0.09081850373925593 VVTSTDVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VVTSTDVAK 9 0 Q5T5Q6;P51801-2;P51801 Q5T5Q6 CLCNKB Chloride channel protein ClC-Kb 0 ;; 108.09 0.0062074 1542210000.0 1184300.0 1253800.0 1081710.0 1009920.0 1003540.0 1305450.0 1309390.0 1167350.0 1739520.0 1291300.0 False True 1177923.8603881008 1295531.975061895 1234005.3656081315 1137775.76845057 1131334.8705524052 1215207.3141987552 1246049.8033444523 1254463.5846831913 1310838.604373793 1208888.1284624487 0.9743861591942916 1.0716723446607472 1.0207771393847904 0.9411754004877817 0.9358474485073476 1.0052272709008596 1.0307403753970754 1.0377003091913135 1.0843340864311508 1.0 20.20524931185985 2.228681731784113 3.172589520734081 1.0423523601649323 0.9908965597534577 0.24321540634873284 0.04105207350806872 0.38856235187743887 8.143171777989856 0.017908466897808256 0.013161864558181828 169.30965773918416 -2.228681731784113 -0.05145580041147457 VVTTNYKPVANHQYNIEYER ddPTM_BT-474_Trastuzumab_2h_R1 2 VVTTNYKPVANHQYNIEYER 20 1 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 0 ; 142.98 1.0406e-07 1287810000.0 505570.0 486580.0 453390.0 443310.0 494160.0 531120.0 515760.0 454690.0 578150.0 514990.0 False True 502848.0672941074 502775.52115617815 517223.37106347387 499433.00054640207 557088.3468842071 494404.9245219978 490810.71840546746 488621.276669037 435672.67931309086 482122.8972948792 1.0429873173738773 1.0428368450807415 1.0728039965858047 1.0359039227314184 1.155490332464913 1.0254748888634646 1.01801993051841 1.0134786781764966 0.9036548186314866 1.0 18.879041423211273 1.7797148691231175 1.5138930684466223 0.9584437465013771 1.0648607435102626 0.4974672280482595 0.0420805925696534 0.312450291666583 1.372217846516269 0.031308182476811997 0.012631131722789584 60.21641125804804 -1.7797148691231175 0.10641699700888552 VVTTPAFMCETALHYIHDGIGAMVR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVTTPAFMCETALHYIHDGIGAMVR 25 0 P0DPI2-2;A0A0B4J2D5-2;P0DPI2;A0A0B4J2D5;A0A096LNH5;A0A096LPI6 P0DPI2-2 0 155.76 2.9336e-08 128160000.0 41833.0 40507.0 47560.0 38143.0 57032.0 57230.0 52127.0 26775.0 61328.0 51523.0 False True 41607.775776083225 41855.251008001425 54256.034601069325 42971.89988911011 64294.687144852 53273.82480492913 49605.41786552226 28773.086460695104 46214.53615309736 48234.758028940436 0.862609816579134 0.8677404576776074 1.1248327309637622 0.8908907527498602 1.3329534504200424 1.1044696186298955 1.0284164343845041 0.5965218368760449 0.9581168858641115 1.0 15.557785508666122 1.8966153381998545 13.522824878818332 0.8078693928880648 1.037474119928413 0.17676032450739732 0.16865888963753947 1.3789383472435068 176.0328945300567 0.07038085355071541 0.04519429803827892 78.81617205115869 -1.8966153381998545 0.22960472704034818 VVTTSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVTTSAR 7 0 F8VTQ9;F8VXU8;Q8IUR5 F8VTQ9 TMTC1 Transmembrane and TPR repeat-containing protein 1 0 ; 99.279 0.024765 669340000.0 343560.0 398920.0 419640.0 372780.0 279920.0 319660.0 412740.0 307290.0 514740.0 364870.0 False True 341710.3111331042 412197.8110477681 478721.6644237324 419973.90977800585 315566.1527841734 297562.65659870056 392774.1893800842 330221.54018700303 387889.2241626229 341583.6842190768 1.0003707053933706 1.2067257017563007 1.4014769631581738 1.2294905441345758 0.9238326283224437 0.8711266677709844 1.149862266630323 0.9667368654973971 1.1355613341117536 1.0 18.381879540559204 3.2514635595572425 24.9931127132075 1.0070055266432347 1.2230282403801256 0.39932107089548663 0.12071203970648003 225.9669240851756 437697.3068560395 0.034176168607341566 0.045984276349389355 1784.282268093838 -3.2514635595572425 0.21602271373689086 VVTVFSVADGYSENNVFYGHHAK ddPTM_BT-474_Trastuzumab_2h_R1 3 VVTVFSVADGYSENNVFYGHHAK 23 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 ;; 241.8 1.5037e-37 1989993000.0 1634219.0 2126268.0 2128315.0 2133923.0 2055980.0 2002336.0 2150537.0 1267144.0 1758887.0 1944678.0 False True 1625420.5464828017 2197039.545023849 2427963.2523543886 2404077.4330039443 2317796.8662518063 1863919.225311943 2046507.3094608663 1361704.7197068536 1325432.8667282963 1820566.985117401 0.8928100749767166 1.2067886339717242 1.3336302768325874 1.3205102875404033 1.2731181468186081 1.0238124938818147 1.1241043730829245 0.7479563953638557 0.728033012552309 1.0 20.795956392951325 1.969552745840683 1.9704394754696881 0.800239779620754 1.2028581218941612 0.517732126941344 0.14796821608371846 0.24380522148172304 1.7555507266882806 0.08940561980200239 0.04497414001715626 93.22936922004067 -1.969552745840683 0.4026183422734072 VVTVHLEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVTVHLEK 8 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 ; 118.5 0.0018756 1136930000.0 2582300.0 2640300.0 2384300.0 2140000.0 2074300.0 2601000.0 2594300.0 2446700.0 3549600.0 2879900.0 False True 2568397.1837204997 2728180.789404947 2719988.715292883 2410923.780580858 2338449.8096606545 2421198.992095418 2468803.7978115836 2629285.1780908587 2674848.642203142 2696102.316393565 0.9526334249644169 1.011898091855168 1.0088596040120872 0.8942256256082389 0.8673446090831881 0.8980367612064994 0.9156936599920931 0.9752171355306412 0.9921168888653852 1.0 21.362443816790776 -0.6006981791034023 6.355916807847995 0.9999999990185009 0.9455562617757102 0.09991846971344442 0.048381889140280666 0.0 0.0 0.05183867998753376 0.012218493957946627 0.25078515248541583 0.6006981791034023 -0.054443737242790724 VVVHPLVLLSVVDHFNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVVHPLVLLSVVDHFNR 17 0 P51665;H3BNT7;H3BTM8;H3BQV2 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 ; 275.23 5.9476999999999996e-36 1756700000.0 1093270.0 1531530.0 1287910.0 1422160.0 1360500.0 1485950.0 1436160.0 1268830.0 1616130.0 1486860.0 False True 1087383.955793715 1582506.0502205663 1469236.5332856006 1602205.310182652 1533751.610684724 1383229.7740500502 1366687.4541360233 1363516.5375881896 1217856.4165325016 1391967.3218351118 0.7811849737680288 1.1368844838499916 1.0555107941389172 1.1510365832944778 1.101858920554751 0.9937228786567041 0.981838749155576 0.9795607383875837 0.8749173902494567 1.0 20.408693911847156 2.4982344855010146 3.6814629590137176 0.9617545155380112 1.0567497848494602 0.13270273210435868 0.1015912541034606 0.4318470822723895 12.594053098285649 0.034928286281075235 0.030796057493498723 314.9448314138178 -2.4982344855010146 0.09499526931144908 VVVLMGSTSDLGHCEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVVLMGSTSDLGHCEK 16 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 ; 258.96 1.0003e-26 2372600000.0 1659060.0 2048470.0 1981650.0 1850610.0 1674040.0 2462790.0 2409960.0 2015410.0 2695920.0 2360950.0 False True 1650127.8052988963 2116652.085623735 2260649.095189422 2084897.036252683 1887219.071187545 2292543.1240840713 2293381.0278587695 2165810.128244616 2031546.639477207 2210272.149689009 0.7465722289135632 0.9576431960749963 1.0227921912274474 0.943276164677745 0.8538401352308953 1.037222101543757 1.0376011968396988 0.979883915448761 0.919138686049612 1.0 21.07579258818686 2.728979392232542 24.967434655432417 0.9959805143432818 0.9164490711796671 0.2582920673067164 0.0749110182795039 1109.0375624298294 2890003.880232571 0.02477062794614958 0.023643147428608888 535.7712339553193 -2.728979392232542 -0.07953144316361471 VVVS(ph)PTK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVVSPTK 7 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 VVVS(0.998)PT(0.002)K;VVVS(1)PTK;VVVS(1)PTK;VVVS(1)PTK 143.37 0.0025448 11510900000.0 26882600.0 22567100.0 19031600.0 18175600.0 17427800.0 26968900.0 26677200.0 24261800.0 37969500.0 27251400.0 True False 26737867.06853764 23318232.281399973 21711083.85436733 20476629.09641373 19647127.027336467 25104603.420961972 25386721.919199474 26072338.714924116 28612425.490233343 25512192.32090267 1.048042705707841 0.9140034689333562 0.851008160383731 0.8026213050940668 0.7701073580900833 0.9840237602941416 0.995081943561534 1.0219560274152726 1.121519669118776 1.0 24.60468354255588 2.5322659168691306 5.927722543122792 1.0287698182200413 0.8731906089701604 0.48707862052752904 0.07682535979995767 0.19858711754085837 15.440086746046466 0.027027814894531096 0.025068848563896438 340.61668417208983 -2.5322659168691306 -0.1555792092498809 VVVS(ph)PTKK ddPTM_BT-474_Trastuzumab_2h_R1 4 VVVSPTKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 VVVS(0.833)PT(0.167)KK;VVVS(0.987)PT(0.013)KK;VVVS(0.995)PT(0.005)KK;VVVS(0.997)PT(0.003)KK 130.98 0.00062755 27127310000.0 10885610.0 8021950.0 6960980.0 6452240.0 6753100.0 11645850.0 10812760.0 10146640.0 18709300.0 11819750.0 True False 10827003.08526497 8288955.756378826 7941025.478077192 7269092.922436936 7613067.256240355 10840799.80088211 10289705.490045568 10903833.800393926 14098643.70677579 11065403.435602909 0.9784553404016986 0.7490875325619969 0.7176444604384655 0.6569207317872069 0.6880062982381039 0.9797021738947053 0.9298988102809217 0.9853986674639325 1.2741192663083063 1.0 23.399552715796304 2.147527261396036 1.2110611141111138 1.099602660046972 0.7557713368815768 0.5798059322329214 0.11785388541640167 0.34177670529473975 0.9485754431624998 0.08237643355038596 0.04319079724448322 140.45178447614077 -2.147527261396036 -0.3438313231653951 VVVSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 VVVSNR 6 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 113.08 0.061517 1158270000.0 547110.0 637980.0 554100.0 621870.0 578310.0 577480.0 629850.0 591320.0 803280.0 665160.0 False True 544164.4205496354 659214.7786329458 632112.4636764621 700598.6782382325 651954.3505880799 537560.1668416996 599381.7492393419 635447.3010621192 605322.4074005358 622708.9193278741 0.873866430461577 1.058624275599705 1.0151010272323349 1.1250821314626895 1.0469648504340874 0.8632607469665274 0.9625392067393053 1.0204563983891453 0.9720792309413127 1.0 19.248198418142017 VVVSPT(ph)KK ddPTM_BT-474_Trastuzumab_2h_R1 1 VVVSPTKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 VVVS(0.218)PT(0.782)KK 110.38 0.006647800000000001 6034800000.0 461390.0 391780.0 351340.0 351710.0 306830.0 534750.0 479780.0 467340.0 865460.0 554370.0 True False 458905.92750524846 404820.1604639883 400805.6180979752 396236.4499383616 345902.98177610745 497783.9911660994 456571.2084624147 502215.28390443494 652178.9795698487 518989.631979964 0.8842294705474287 0.7800158914920611 0.7722805878970789 0.763476619805882 0.6664930481491032 0.9591405309332205 0.8797308854139902 0.967678837799641 1.2566320006851825 1.0 18.98534619213269 1.8107734456163433 1.2873326893893076 1.114008305017868 0.7854704091515293 0.636343007804351 0.09521576352156393 0.26654750739474947 0.8259731212320054 0.0740306835517282 0.03015315418309434 64.68051148866503 -1.8107734456163433 -0.32853789586633864 VVWVEESDKR ddPTM_BT-474_Trastuzumab_2h_R1 5 VVWVEESDKR 10 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ;;;; 208.6 1.7755e-07 4405280000.0 2311310.0 2266670.0 2326500.0 1922730.0 1463030.0 2042960.0 2405120.0 1884000.0 3726500.0 2344500.0 False True 2298866.1637706803 2342114.740719048 2654050.977699489 2166147.420858052 1649338.1984418035 1901734.9838105536 2288775.157149363 2024593.6467581557 2808154.007541699 2194872.0027725664 1.0473805127892417 1.0670848859343434 1.2092053542743662 0.9869128669561462 0.7514507435323592 0.8664445951327815 1.042782975161275 0.9224199152391052 1.279415840192245 1.0 21.06570537862943 3.505138248033607 23.188289621881477 0.9609406484005891 1.1028513815275958 0.15761025753521896 0.1340212839079397 494.5456812940872 409308.8313949402 0.03614919650409333 0.05581451004764212 3199.913569223673 -3.505138248033607 0.14191073312700664 VVYAFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 2 VVYAFSPK 8 0 A7KAX9;A7KAX9-2;G3V174 A7KAX9 ARHGAP32 Rho GTPase-activating protein 32 1 VVYAFS(1)PK;VVYAFS(1)PK 131.82 0.0010372 1529990000.0 1763510.0 1579620.0 1557540.0 1232920.0 801080.0 1307190.0 1640700.0 1201510.0 2627500.0 1399780.0 True False 1754015.4581043785 1632196.6967995455 1776828.0936196267 1389007.5455858633 903092.7896268421 1216827.0320942744 1561333.0729173427 1291172.7773441556 1979987.8316961804 1310444.8419880492 1.3384885818188252 1.2455287277283438 1.3558968959914688 1.0599511716026355 0.6891497914988763 0.928560282055253 1.1914527211604542 0.9852934942193703 1.5109280209706355 1.0 20.321625199705494 3.7076324381571335 8.173898336732899 1.036757252968783 1.3065106142814595 0.2646209919998592 0.1982383806315923 0.37043151057329987 90.06297078183823 0.053653614088890696 0.08444491745012132 5100.7312072288 -3.7076324381571335 0.2697533613126766 VVYFGDSMHSDIFPAR ddPTM_BT-474_Trastuzumab_2h_R1 1 VVYFGDSMHSDIFPAR 16 0 Q5TFE4;Q5TFE4-2 Q5TFE4 NT5DC1 5-nucleotidase domain-containing protein 1 0 184.02 1.8901e-09 396230000.0 191500.0 283390.0 234780.0 269410.0 264170.0 271770.0 276550.0 210900.0 283930.0 290960.0 False True 190468.98527765038 292822.4648371274 267834.983255657 303517.27837677044 297810.4836417375 252983.17957776686 263172.2199764073 226638.42892850036 213959.25596707757 272390.68369661144 0.699249264669399 1.0750091040678649 0.9832751238804167 1.1142718769149527 1.09332110628805 0.928751219184645 0.9661571989353658 0.8320344361737794 0.7854866879565722 1.0 18.055317835589502 1.9812367637790689 2.3472870436007214 0.8571296452215912 0.9988155507286232 0.12499176820815383 0.12242173866175186 0.48834534357773624 4.997702346037173 0.06540477565635353 0.03504642185184434 95.77160458577013 -1.9812367637790689 0.14168590550703197 VWAHYEEQPVEEVMPVLEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 VWAHYEEQPVEEVMPVLEEK 20 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ;;; 228.3 3.1426e-25 799870000.0 764870.0 706081.0 644520.0 636460.0 637721.0 793120.0 727200.0 712930.0 1021320.0 790270.0 False True 760752.0249050455 729582.4792500219 735262.8137317321 717035.7707422865 718930.9892814942 738293.4812036579 692022.5578262281 766132.4567851861 769629.3709868474 739834.2920158131 1.0282735378921655 0.9861430959926739 0.9938209429686948 0.9691842869145632 0.9717459666848315 0.9979173568611467 0.9353750769522818 1.035546020309114 1.0402726384713152 1.0 19.496842646721618 1.615004645186788 24.999999999969575 1.0284331752739422 0.9834653018519565 0.3811032673701966 0.024463134140835778 0.5480267119492177 1912.9535217015095 0.011156356323236636 0.0060228498151615505 41.21019268903563 -1.615004645186788 -0.044967873421985716 VWDAVSGDELMTLAHK ddPTM_BT-474_Trastuzumab_2h_R1 4 VWDAVSGDELMTLAHK 16 0 Q9Y3F4;Q9Y3F4-2 Q9Y3F4 STRAP Serine-threonine kinase receptor-associated protein 0 ;;; 254.45 1.3975e-26 3739964000.0 2277447.0 2393657.0 2127995.0 2007257.0 2011818.0 2311187.0 2444143.0 2222964.0 2866832.0 2363346.0 False True 2265185.4784001475 2473328.4262487893 2427598.1991358795 2261375.5303913034 2268011.0973204863 2151420.0826389943 2325910.4655570267 2388852.8616624707 2160339.6671806774 2212515.2349176933 1.0238055958445924 1.1178808566896934 1.0972119698087355 1.0220835973025189 1.0250827029468375 0.9723865619931101 1.0512517287337693 1.0797000734556919 0.976417984873692 1.0 21.07725595865067 3.7320230857015995 24.59722156245386 1.0251678819825985 1.0834576132085558 0.3441652795707517 0.03793678336897065 480.96897953435524 1809629.79864721 0.010449657332836407 0.016598854064085528 5395.393019315131 -3.7320230857015995 0.058289731225957375 VWDEANLR ddPTM_BT-474_Trastuzumab_2h_R1 3 VWDEANLR 8 0 Q96GA7;F8VYZ3 Q96GA7 SDSL Serine dehydratase-like 0 ;; 160.54 0.0008207 379710000.0 501550.0 657700.0 584610.0 589530.0 557200.0 638460.0 622470.0 520800.0 757110.0 604290.0 False True 498849.71052744327 679591.1469119538 666918.0064787882 664164.4375541272 628156.1172168532 594324.7629731796 592358.7480336811 559664.7405688146 570530.3852542319 565723.6948413018 0.8817903776637496 1.2012775019130044 1.178875858586538 1.1740085197252348 1.1103585070677746 1.0505566027951172 1.0470813816625641 0.9892899054295633 1.008496533655495 1.0 19.109738072701756 2.4202867813745765 1.6723333298335428 1.002778233413994 1.1220445998993465 0.22962721673988484 0.0845146571202202 0.49639748037709436 2.820383875746519 0.03926134996460725 0.0290347445679355 263.20054327496456 -2.4202867813745765 0.11926636648535238 VWDISGLR ddPTM_BT-474_Trastuzumab_2h_R1 4 VWDISGLR 8 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IU78 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ;;; 181.33 0.00054531 979051000.0 1727617.0 1851080.0 1818130.0 1825370.0 1658170.0 1660930.0 1821220.0 1550654.0 2043370.0 1742050.0 False True 1718315.7020282922 1912692.0787985087 2074106.9005307432 2056461.6548405986 1869328.1207564054 1546113.8185086676 1733120.6308639762 1666371.6755414654 1539808.8432551927 1630870.8775559596 1.0536184842563248 1.1728041165741394 1.2717787343404046 1.2609592108986787 1.1462146675632594 0.9480295710630937 1.0626964125211735 1.0217680004432403 0.9441635536240408 1.0 20.637211132070526 2.886675327580425 4.85980002543343 1.00512283733025 1.195456138243628 0.6758654674256963 0.06453867909579435 0.14235134915862763 5.135277841264047 0.02086993210674312 0.02234045060438965 770.3273678905679 -2.886675327580425 0.19033330091337786 VWDLSDIDKDGHLDRDEFAVAMHLVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWDLSDIDKDGHLDRDEFAVAMHLVYR 27 2 Q9UBC2;Q9UBC2-2;Q9UBC2-3;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 0 230.9 1.4242e-35 517640000.0 387110.0 311590.0 265860.0 275160.0 280070.0 404940.0 362460.0 265790.0 503720.0 370010.0 False True 385025.8427719647 321961.08478986734 303290.7771034546 309995.22778720973 315735.2543950539 376947.4509262276 344926.42506833735 285624.5994542729 379584.9555021882 346395.6450185015 1.1115204486805828 0.9294605443803167 0.8755617498807047 0.8949166429925886 0.9114873669332362 1.0881991628563756 0.9957585495912177 0.8245617505930748 1.0958133018153677 1.0 18.402061266655878 VWDPDNPLTDR ddPTM_BT-474_Trastuzumab_2h_R1 6 VWDPDNPLTDR 11 0 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 0 ;;;;; 167.67 4.4122e-05 662483000.0 997179.0 1229731.0 1171376.0 1130559.0 1079183.0 1229665.0 1245771.0 1075069.0 1306286.0 1214004.0 False True 991810.2990610016 1270661.8529469122 1336295.559017286 1273687.6534811729 1216610.5582312194 1144661.1528700525 1185508.2974226312 1155296.1078697692 984369.3186356145 1136525.225358884 0.8726689711157222 1.118023449541713 1.175772899009188 1.1206857754336044 1.0704650729129628 1.0071585982692106 1.0430989748144655 1.016516028058205 0.8661218393324944 1.0 20.11619827468213 1.4991970967069588 3.240048230983004 0.9330068646239139 1.0657167165299948 0.25341773727475847 0.08298228056039428 0.28604844723267997 6.187555689057564 0.05983170894811084 0.021997895173510192 31.564367901983633 -1.4991970967069588 0.13270985190608087 VWDVIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWDVIGR 7 0 J3KNF4;O14618;E9PP76 J3KNF4 CCS Copper chaperone for superoxide dismutase;Superoxide dismutase [Cu-Zn] 0 121.29 0.010358 131420000.0 185670.0 226630.0 205430.0 207130.0 196040.0 226910.0 217070.0 185320.0 235810.0 214270.0 False True 184670.37334987635 234173.24254927202 234352.75837043053 233352.6367624825 221004.53197988495 211224.24578868572 206569.49481207263 199149.51943589255 177697.78519211258 200595.10515422365 0.9206125603508426 1.1673926059623063 1.168287522221706 1.163301749477256 1.101744391070609 1.0529880359059114 1.0297833272315178 0.9927935144916936 0.8858530473886344 1.0 17.61392687671848 2.069824560578387 1.2858564101562298 0.949638145127216 1.1133992029117876 0.4167498220368019 0.07370221258187541 0.4175407623223783 1.292231227367489 0.050949832334870264 0.02517568263819515 117.44230342434126 -2.069824560578387 0.16376105778457162 VWDYETGDFER ddPTM_BT-474_Trastuzumab_2h_R1 4 VWDYETGDFER 11 0 P43034 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 ;;; 256.47 3.9575e-20 1506610000.0 1965630.0 2553260.0 2291320.0 2328370.0 2141040.0 2161700.0 2221590.0 2113420.0 2674800.0 2391750.0 False True 1955047.2664820254 2638243.715621737 2613917.93948953 2623141.403266843 2413688.753061685 2012266.7670944482 2114123.204402048 2271134.132129307 2015631.3804837097 2239106.4673198056 0.8731372514064518 1.1782573781673256 1.167393323024238 1.1715125839490448 1.0779696223872968 0.8986918650202091 0.9441816346199198 1.0143037703999123 0.9001945239774176 1.0 21.094491697882027 2.876053857578911 5.47892315572423 0.9574897118199167 1.1100690159074849 0.38417179611722296 0.08941971050187648 0.23359724897555054 9.501929696183055 0.02724821566031512 0.029056853968681764 751.7161097995456 -2.876053857578911 0.15257930408756815 VWEADWQIRMVFVGHTGPVTAMT(ph)VLPNT(ph)TLVLSASQDGTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 VWEADWQIRMVFVGHTGPVTAMTVLPNTTLVLSASQDGTLR 41 1 E9PKB8;A6NE52-2;A6NE52 E9PKB8 KIAA1875 WD repeat-containing protein KIAA1875 2 VWEADWQIRMVFVGHT(0.008)GPVT(0.452)AMT(0.54)VLPNT(0.28)T(0.264)LVLS(0.234)AS(0.208)QDGT(0.014)LR;VWEADWQIRMVFVGHT(0.219)GPVT(0.359)AMT(0.422)VLPNT(0.307)T(0.29)LVLS(0.21)AS(0.19)QDGT(0.002)LR 55.308 0.023777 2628400000.0 436792.0 710674.0 648827.0 618297.0 669678.0 622704.0 661660.0 644595.0 377608.0 766492.0 True False 434440.36040415376 734328.3544784951 740176.2018946174 696573.3368045798 754957.5238075155 579657.9381675447 629652.9780133425 692697.9520870871 284551.56808796595 717573.8243331844 0.6054294982232157 1.023348859137776 1.0314983306176708 0.970734039040346 1.0520973566853145 0.8078025124539625 0.8774748418372931 0.965333361666009 0.3965467502279497 1.0 19.452767739006323 VWEDRPS(ph)SAGSTPFPYNPLIMR ddPTM_BT-474_Trastuzumab_2h_R1 2 VWEDRPSSAGSTPFPYNPLIMR 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 VWEDRPS(0.496)S(0.496)AGS(0.006)T(0.001)PFPYNPLIMR;VWEDRPS(0.496)S(0.496)AGS(0.006)T(0.001)PFPYNPLIMR 89.565 0.0015205 1146420000.0 321354.0 329520.0 296110.0 235180.0 320760.0 274116.0 403650.0 278073.0 354030.0 391530.0 True False 319623.8657697857 340487.8740009537 337799.7141657413 264953.76388645155 361606.8847065289 255167.00611965678 384123.9074072572 298824.21928608307 266784.0502589528 366542.22019430256 0.8719974075574551 0.9289185671993323 0.9215847330947988 0.7228465079575298 0.9865354242543808 0.6961462883713472 1.047966335784278 0.8152518395498275 0.7278398928165264 1.0 18.483619859308313 VWEDRPSS(ph)AGSTPFPYNPLIMR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWEDRPSSAGSTPFPYNPLIMR 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5 C9J0Q5;Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 VWEDRPS(0.14)S(0.86)AGSTPFPYNPLIMR 115.55 0.0001163 110070000.0 31486.0 31258.0 26622.0 32358.0 33478.0 35443.0 33898.0 30413.0 26583.0 39721.0 True False 31316.482874423444 32298.40363413999 30370.146197427825 36454.519482259515 37741.22486034782 32992.90883384769 32258.224237064744 32682.572494084787 20031.975843950346 37185.97177314098 0.8421585178807401 0.8685641948846091 0.8167097630984557 0.9803298863522029 1.0149317890788025 0.8872407324763826 0.8674836961061888 0.8788952106313127 0.5386971185305751 1.0 15.18247085383246 -0.9801246743947002 4.648410719693251 1.0000024463907393 0.8653131295434217 0.10965280966455737 0.12077732116834171 15137753.759813804 3256543.8538502962 377.7442860525713 0.027813978825097348 0.10468279884389302 0.9801246743947002 -0.13468931684731766 VWEWDIPVDFK ddPTM_BT-474_Trastuzumab_2h_R1 2 VWEWDIPVDFK 11 0 O60508;Q5SRN1 O60508 CDC40 Pre-mRNA-processing factor 17 0 ; 159.83 6.5608e-05 311210000.0 308960.0 323880.0 307370.0 285520.0 280490.0 358650.0 351400.0 329580.0 448970.0 355960.0 False True 307296.59368868294 334660.15001040534 350645.02429206617 321666.80272497487 316208.7389055191 333857.3696712885 334401.43952163967 354174.93317332916 338327.359389775 333242.3280473117 0.9221415403299393 1.0042546274700503 1.0522223462629385 0.9652639405379096 0.948885277444784 1.0018456287578494 1.0034782840496883 1.0628149648595828 1.0152592600473653 1.0 18.34621213620116 2.1112039818166113 2.9282332663423563 1.0326714994481867 0.9837883260904644 0.21397584398883684 0.03629978146364148 0.3699672058160332 6.298371832148314 0.016602128483579552 0.010867952637551944 129.18258830176455 -2.1112039818166113 -0.0488831733577223 VWFGDVEAETMYR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWFGDVEAETMYR 13 0 H0Y8R3;Q5QPV1;Q06330-3;Q06330-2;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330;Q9UBG7 H0Y8R3 RBPJ;RBPJL Recombining binding protein suppressor of hairless;Recombining binding protein suppressor of hairless-like protein 0 125.23 0.00047141 41039000.0 23248.0 29525.0 27244.0 29081.0 25592.0 32409.0 33212.0 25638.0 31083.0 38099.0 False True 23122.835351095622 30507.72177676061 31079.718390906914 32762.65161825789 28850.989504331836 30168.642112579928 31605.408677839252 27551.237747126106 23423.011140861046 35667.48920180505 0.648288844226395 0.855336959777272 0.8713738781852365 0.9185578337989612 0.8088875934354177 0.8458302725455976 0.8861125182941044 0.7724467957708613 0.6567047937782977 1.0 15.12232204100606 4.741474021804822 24.365768089391374 0.8397260994647529 0.6482887431876801 0.3193168474164856 0.08620366919600717 238.79297102574793 1996954.3099562644 0.020064495139162187 0.14062745962541306 55140.92177473198 -4.741474021804822 -0.1914373562770727 VWGSPGGEGTGDLDEFDF ddPTM_BT-474_Trastuzumab_2h_R1 2 VWGSPGGEGTGDLDEFDF 18 0 Q13438-4;Q13438;Q13438-8;Q13438-6;Q13438-5;Q13438-3;Q13438-2;Q13438-7;B4E321 Q13438-4 OS9 Protein OS-9 0 ; 253.79 3.7743e-30 44589000.0 75318.0 109114.0 104413.0 100825.0 99855.0 97847.0 106263.0 100474.0 98754.0 91408.0 False True 74912.4962566164 112745.79352919418 119113.44282593476 113589.43466217989 112570.94236304535 91083.06719706266 101122.65272591928 107971.88007663426 74417.39993580374 85574.26318167408 0.8754091881291136 1.3175198866724096 1.3919306856672202 1.3273784715040973 1.3154766185255649 1.064374542187917 1.181694693780021 1.261733096636895 0.8696236130928253 1.0 16.384889344830473 1.2422776244515052 24.99593115060262 0.9348117426405456 1.227761689548212 0.3700020417213232 0.14671344061722796 88.51541703427156 595277.2263872704 0.10655119429886799 0.03553295845382236 17.46938533368742 -1.2422776244515052 0.2929499469076664 VWIPDPDEVWR ddPTM_BT-474_Trastuzumab_2h_R1 2 VWIPDPDEVWR 11 0 Q9ULV0 Q9ULV0 MYO5B Unconventional myosin-Vb 0 ; 139.98 9.0297e-05 163208000.0 346550.0 410620.0 396840.0 418270.0 392270.0 439570.0 410580.0 365340.0 417300.0 427100.0 False True 344684.2133053243 424287.2384749685 452711.6226048859 471222.9391138111 442223.2593335509 409183.56053647917 390718.6768320863 392603.52595893043 314462.00653351675 399842.1123412937 0.8620508012200371 1.0611369472578445 1.132225967780163 1.178522533193274 1.1059947056204071 1.0233628422491223 0.9771824046852275 0.9818963882018895 0.7864654493049023 1.0 18.60907090266339 1.980539448661904 1.4896604957930049 0.9088015634779532 1.074341142540107 0.31153317192704255 0.0942998387242998 0.4808286451305047 1.986883210903498 0.0658756610197997 0.031012972010823522 95.61795445932485 -1.980539448661904 0.16553957906215389 VWLDPNETNEIANANSR ddPTM_BT-474_Trastuzumab_2h_R1 4 VWLDPNETNEIANANSR 17 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 ;;; 311.99 8.8623e-58 1681990000.0 985800.0 1187370.0 1073680.0 1205570.0 1127780.0 1096530.0 1177230.0 1084770.0 1246830.0 1093660.0 False True 980492.5623326763 1226890.8926696794 1224844.8114061425 1358195.0383901238 1271396.0981242324 1020729.4620539749 1120282.88744468 1165721.0457504469 939565.4531660317 1023861.6824705668 0.9576416220272631 1.1982974982609031 1.1962991020921945 1.3265415257193864 1.241765484431811 0.9969407777728003 1.0941740536099076 1.1385532496318984 0.9176683425625137 1.0 19.96558939843926 2.7401390440332656 24.955831288953213 1.0516474147534676 1.193487435632941 0.34362447715126765 0.104240233155939 180.90490341277692 2860221.9451090423 0.033630431634657024 0.034020553370492417 549.7168434262845 -2.7401390440332656 0.14184002087947345 VWLIDDILEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VWLIDDILEK 10 0 Q9Y606-2;Q9Y606;F5GY32;F5H1S9;G8JLB3 Q9Y606-2 PUS1 tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase 0 ; 166.33 1.2986e-05 14238000.0 164597.0 146683.0 157617.0 171212.0 157110.0 224682.0 203277.0 188208.0 228880.0 181040.0 False True 163710.82804044575 151565.25498325416 179808.1035684764 192887.42164523798 177117.0272360729 209150.26218453737 193443.71491644965 202253.03666085913 172475.59083487012 169485.872203858 0.9659261029351992 0.8942648317079263 1.0609031964162936 1.1380737470155184 1.045025316464349 1.2340277066454894 1.1413559867914838 1.1933327187152727 1.017639928285091 1.0 17.370805494400777 4.075090086486008 3.842571864586176 1.1252778284770821 0.9310011562211324 0.473794285802306 0.0732241717542239 0.15938230723979868 4.623305044806989 0.01800873105155831 0.04216271339015816 11887.487861642534 -4.075090086486008 -0.1942766722559497 VWLWTACDFADGER ddPTM_BT-474_Trastuzumab_2h_R1 2 VWLWTACDFADGER 14 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 0 ; 116.55 0.00082628 364800000.0 505020.0 451240.0 409410.0 359560.0 380270.0 470570.0 493810.0 280450.0 656080.0 466500.0 False True 502301.02843299694 466259.25061966 467051.36934448726 405080.2591334824 428695.1304631242 438040.60350263 469922.5237626093 301378.6030962442 494397.8750215914 436727.570609256 1.150147282280033 1.067620370221202 1.0694341295946306 0.9275353478791731 0.9816076641671004 1.0030065262230692 1.0760083754434022 0.6900837578809292 1.1320509816494584 1.0 18.736374085760367 4.769175685074626 0.6021302154532702 0.9396371281713265 1.2963213578747181 0.1725822433338191 0.11355697425375669 5.399437297242036 1.446763179488607 0.05527436987001849 1.3561937019094688 58772.705757612086 -4.769175685074626 0.35668422970339164 VWNVAENSYVETLFGHQDAVAALDALSR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWNVAENSYVETLFGHQDAVAALDALSR 28 0 O43818 O43818 RRP9 U3 small nucleolar RNA-interacting protein 2 0 168.35 5.0319e-12 40417000.0 30615.0 43611.0 36967.0 40550.0 50317.0 35306.0 38387.0 40831.0 44578.0 40897.0 False True 30450.17224164628 45062.56577159382 42171.63227707592 45683.625842314854 56724.57169777527 32865.3793213844 36530.07415741944 43878.016555616894 33592.34921459652 38286.91844631675 0.7953153055224695 1.176970296911657 1.1014632148107206 1.1931915049880355 1.4815653492017258 0.8583970884850903 0.9541137192495491 1.1460315516679567 0.8773845108923398 1.0 15.224563927929692 VWQLGSSSPNFTLEGHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VWQLGSSSPNFTLEGHEK 18 0 P35606;P35606-2 P35606 COPB2 Coatomer subunit beta 0 ; 222.44 5.693999999999999e-19 3227200000.0 2872500.0 2898300.0 2674400.0 2775900.0 2501100.0 3269700.0 3209000.0 3033000.0 4348300.0 3464500.0 False True 2857034.779164751 2994768.1634406527 3050932.2736984817 3127328.65538056 2819600.259818862 3043673.3350458965 3053768.410429545 3259337.8612619336 3276719.7292348254 3243392.6438923255 0.8808784790656999 0.9233443163534761 0.9406607859963337 0.9642152519737852 0.8693367006083854 0.9384227163422465 0.9415352212073786 1.0049162155558424 1.0102753779765945 1.0 21.62907225580888 1.846593659517495 2.328255516332941 1.0084430457934062 0.9204068144929441 0.679284612198199 0.026301157068185057 0.17104598724518652 1.7279680890858902 0.01587918250981644 0.007577967692869598 70.24148094842809 -1.846593659517495 -0.08803623130046201 VWQVTIGTR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWQVTIGTR 9 0 P63244;J3KPE3;D6RHH4;H0YAF8;D6RAC2;H0Y8R5;D6RF23;D6RHJ5 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 122.33 0.0013699 269320000.0 326400.0 352830.0 342600.0 287690.0 278580.0 297180.0 349340.0 296650.0 316220.0 336170.0 False True 324642.69866644917 364573.733259761 390835.10206741677 324111.52450247953 314055.5117269754 276636.64608647267 332441.0895916039 318787.5293581774 238291.81813091002 314715.3427903833 1.0315439208906887 1.1584237680543779 1.2418685997388221 1.0298561284899115 0.9979034035723914 0.8790059093837282 1.0563231097793246 1.0129392692828019 0.7571661934817862 1.0 18.263687988084385 3.468651376845194 3.4325272629228842 0.9600976593282449 1.1456960510514862 0.4603687725514788 0.09283658504984893 0.2178683372655894 5.428080779226631 0.02625783008021821 0.039108737402896374 2942.058993444937 -3.468651376845194 0.18559839172324133 VWSEVNQAVLDYENR ddPTM_BT-474_Trastuzumab_2h_R1 1 VWSEVNQAVLDYENR 15 0 Q9NWU2 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog 0 160.84 3.922e-06 52807000.0 52895.0 70797.0 60674.0 60352.0 58016.0 54567.0 69267.0 57511.0 57233.0 62031.0 False True 52610.21919718694 73153.43534730974 69216.37181213802 67992.55701197009 65403.99371222711 50794.91172690141 65916.29058436386 61802.76285494068 43128.69403290863 58072.12847258901 0.9059461153041742 1.2596995714017847 1.1919034764639165 1.1708294288552499 1.126254460314794 0.8746865848197287 1.1350761943481618 1.064241392221616 0.7426745870571297 1.0 15.825558292539139 2.893116278575615 8.029919545555929 0.9898425182930722 1.1458389989842144 0.27446235921987283 0.13204554616779832 0.42474017561087135 28.70974269685326 0.0399104484164485 0.04239825753996793 781.8371066626061 -2.893116278575615 0.15599648069114214 VWYVSNIDGTHIAK ddPTM_BT-474_Trastuzumab_2h_R1 2 VWYVSNIDGTHIAK 14 0 P06744;A0A2U3TZU2;P06744-2;A0A0J9YXP8;A0A2R8Y6C7;A0A0J9YYH3;K7EQ48;A0A0J9YX90;K7EPY4;K7ENA0 P06744 GPI Glucose-6-phosphate isomerase 0 ; 212.39 2.5012e-09 15992600000.0 6148300.0 6786700.0 6417000.0 5963800.0 6135700.0 8295300.0 8846800.0 6175500.0 8514700.0 7624100.0 False True 6115198.235940343 7012591.206853212 7320457.822436113 6718816.468517805 6917045.02585686 7721865.436035802 8418846.48594207 6636347.168553605 6416366.276134527 7137523.410679603 0.8567675206207248 0.982496421148061 1.0256299561109379 0.9413372232817755 0.9691099598366502 1.0818690169873026 1.1795192816243898 0.9297828934086426 0.8989625542290991 1.0 22.766992141766867 2.970846536140694 23.687160777382825 1.0207558346960024 0.95857917101949 0.1269812068266427 0.08259048163772965 883.8440954474844 718122.656159263 0.02689597548263189 0.02858437866155191 935.0751942292089 -2.970846536140694 -0.06217666367651242 VYADGIFDLFHSGHAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYADGIFDLFHSGHAR 16 0 P49585;C9JEJ2;C9J050;H7C1T3;C9J2E1;C9JPY0;Q9Y5K3-2;Q9Y5K3-4;Q9Y5K3-3;Q9Y5K3;C9JVS0;F8WAZ5;F2Z2B1 P49585 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B 0 ; 92.773 0.0026935 766780000.0 409469.0 600800.0 604730.0 659770.0 577790.0 527600.0 556620.0 180662.0 663510.0 440251.0 False True 407264.4644002828 620797.2648087302 689870.7275926125 743296.8143522578 651368.1316703612 491128.25383681006 529694.1641051092 194143.91582304775 499996.85107849044 412153.8042621563 0.9881370987934311 1.5062271860382084 1.673818658128436 1.8034452349236918 1.5804006294117552 1.191614025536013 1.2851856725024662 0.471047249389356 1.2131317141997318 1.0 18.652823285726537 2.2268071116467527 1.979929464366091 0.8563640872716498 1.522551295657794 0.4288911537612946 0.2827685624048018 0.2711840829089393 2.138803911950198 0.14022220203005514 0.09044943055812879 168.58041229350903 -2.2268071116467527 0.6661872083861442 VYAEADSQESADHLAHEVSLAVFQLAGGIGERPQPGF ddPTM_BT-474_Trastuzumab_2h_R1 2 VYAEADSQESADHLAHEVSLAVFQLAGGIGERPQPGF 37 1 O95394-4;O95394;A0A494C0G1;A0A087WT27;A0A494C1E2;A0A494C1Q4;H0Y8I3 O95394-4 PGM3 Phosphoacetylglucosamine mutase 0 ; 216.46 2.9243e-39 663640000.0 436290.0 538620.0 551660.0 591120.0 554280.0 592240.0 550840.0 143418.0 603500.0 432580.0 False True 433941.06311637553 556547.6410973344 629328.9328853221 665955.7313911008 624864.2725250486 551299.8427830024 524193.7647868526 154120.5794218477 454775.51148568804 404972.3740496296 1.0715325067166082 1.374285449478905 1.5540046018255 1.6444473106441762 1.5429799970712843 1.3613270388548535 1.2943938855508508 0.3805706001144664 1.1229790983963637 1.0 18.62746396964151 1.9231850477245536 7.266232685446793 0.7782005892858523 1.434530583134289 0.5623273810086172 0.23180328076088857 0.1758508401272429 14.522642217225375 0.0990337408667025 0.06164315239526973 83.78862194522196 -1.9231850477245536 0.6563299938484366 VYAILTHGIFSGPAISR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYAILTHGIFSGPAISR 17 0 B1ALA9;P60891;A0A2R8Y7H4;P60891-2;B7ZB02;P11908;P11908-2;H7C540;A0A0B4J207;P21108 B1ALA9;P11908;A0A0B4J207 PRPS1;PRPS2;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 3 0 ; 169.92 1.9134e-09 920580000.0 418630.0 563030.0 502560.0 538610.0 509990.0 576150.0 606170.0 475320.0 624760.0 570380.0 False True 416376.14259416575 581770.1131911775 573316.0796701723 606797.9707750719 574934.203552446 536322.1066112169 576847.2413057279 510790.79202605423 470796.26935509295 533977.8600731139 0.7797629334990672 1.0895023121586347 1.0736701323003768 1.1363729025993459 1.0767004524751722 1.0043901568087148 1.0802830687151412 0.9565767239040869 0.8816775086716705 1.0 19.02642040019816 1.6103456495573334 5.415671183037636 0.934470938630842 1.0421437959206272 0.1474032585337529 0.09602525728762813 0.23445270595449672 14.72599023935559 0.051653430756363396 0.024273392493316788 40.770463574143875 -1.6103456495573334 0.10767285728978526 VYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 VYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFR 32 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 208.58 1.9273e-27 161060000.0 78446.0 111600.0 99753.0 101470.0 83431.0 101020.0 107860.0 121470.0 94472.0 124780.0 False True 78023.65545216996 115314.53853637539 113797.35533138075 114316.09159604643 94055.44331572021 94036.72517550127 102642.39973478681 130534.70821216195 71190.64145994352 116816.4335704673 0.6679167739280764 0.9871431185819766 0.9741553637034694 0.9785959740594838 0.80515592233847 0.8049956868335258 0.8786640423572745 1.1174344586835838 0.6094231717577572 1.0 16.833883719227437 -1.8680152062794035 2.597869527795647 1.0487371393361473 0.8925578288662604 0.04561780761794787 0.14822438963080248 39815616.15552246 26787009.1614387 12008980.680519735 0.03460352361592349 0.013551419629153632 1.8680152062794035 -0.15617931046988687 VYEDSGIPLPAES(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 7 VYEDSGIPLPAESPK 15 0 F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3;Q8IXM2-2 F8W038;Q8IXM2-2 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK 345.71 3.422599999999998e-82 4781190000.0 9187620.0 6348560.0 5451950.0 4796770.0 4911080.0 8591600.0 8221640.0 7466790.0 12702760.0 8614200.0 True False 9138154.874760551 6559867.981814431 6219537.170801093 5404040.590176091 5536476.927748275 7997682.91445098 7823927.863485195 8023999.785391358 9572335.006263351 8064434.381012341 1.1331426908595448 0.8134318753041873 0.7712304269528131 0.6701078259003346 0.686530098227828 0.9917227342417806 0.9701768895170854 0.9949860593179125 1.1869815729174202 1.0 22.94314191927986 2.6003697908268464 6.040845867634611 1.0247465885375668 0.8048718169390118 0.3998527914248502 0.13119619627439588 0.2546361366329583 11.539740747733099 0.044556290067597544 0.0418413967733112 398.4462931516979 -2.6003697908268464 -0.21987477159855506 VYEELR ddPTM_BT-474_Trastuzumab_2h_R1 1 VYEELR 6 0 Q8NE71;Q8NE71-2;H0YGW7 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 103.71 0.080148 286400000.0 753500.0 845540.0 869620.0 794360.0 645510.0 836360.0 869720.0 696430.0 1068500.0 882880.0 False True 749443.2397217199 873683.287760276 992054.9371274575 894925.8945524348 727711.8722624747 778544.4017796702 827648.3209469579 748401.1429998834 805182.492166458 826533.8425284035 0.9067302524832376 1.0570447848664493 1.2002593070995347 1.0827456160957873 0.8804380834986405 0.9419389282331967 1.0013483760267399 0.9054694490312596 0.9741676029905433 1.0 19.656714366487158 3.2547497437386506 24.984233537757177 0.9462601102399819 1.0712603238654486 0.3394194973896366 0.07534022924877765 255.88194173251924 394893.13372827094 0.02137868864640939 0.028859918272258474 1797.8346389409287 -3.2547497437386506 0.12500021362546665 VYEFLDKLDVVR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYEFLDKLDVVR 12 1 O43242;O43242-2;H0YGV8 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ; 190.1 6.4548e-06 1214040000.0 1692280.0 1851520.0 1733510.0 1719520.0 1407600.0 1708960.0 1887780.0 1661120.0 2553500.0 1816440.0 False True 1683168.9525099844 1913146.7239325223 1977573.1400609706 1937211.0556936443 1586849.5165011534 1590823.617659124 1796460.869380085 1785081.209396449 1924224.1401469817 1700513.2440674752 0.9898005548513078 1.1250407667254898 1.1629272203318999 1.1391919836272544 0.9331591635861368 0.9354961645897074 1.0564227451020092 1.049730847803746 1.1315549272315046 1.0 20.697538811521685 3.266108742826971 24.99460265875308 1.0210703471302318 1.1099178441526505 0.2697485869581657 0.06935214600554199 310.06009665513125 281317.464339735 0.02039880177489197 0.027614103446857118 1845.477449716478 -3.266108742826971 0.08884749702241868 VYEGERPLTK ddPTM_BT-474_Trastuzumab_2h_R1 8 VYEGERPLTK 10 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 ;;;;;;; 173.28 3.1553e-06 30130630000.0 19950920.0 23666820.0 21399410.0 19021100.0 20928890.0 24018520.0 23406220.0 23991840.0 30799010.0 22415600.0 False True 19843506.46347558 24454555.796805207 24412260.920993898 21429169.30972266 23594060.08625022 22358176.245914485 22273971.718156498 25782232.928895015 23209006.671089996 20985017.217039354 0.9456035350480012 1.165334083068975 1.1633186033877398 1.0211652002993195 1.124328841011976 1.0654352109732919 1.061422608701533 1.2286019431025499 1.105979872737241 1.0 24.322856311086877 VYEHTSRFS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 VYEHTSRFSPK 11 1 P46100;P46100-4;P46100-2;P46100-5;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;P46100-3 P46100;P46100-3 ATRX Transcriptional regulator ATRX 1 VYEHT(0.003)S(0.359)RFS(0.638)PK 79.646 0.01605 200650000.0 413840.0 489020.0 473500.0 463550.0 418470.0 546300.0 569540.0 496590.0 710270.0 563270.0 True False 411611.9314219461 505296.7350811669 540164.6842642203 522235.3824711473 471759.67403398483 508535.5668518746 541989.1743459166 533648.067432926 535233.4756303884 527321.6263602916 0.7805709283402553 0.958232527971314 1.024355264912184 0.9903545698964579 0.8946336551568925 0.96437457033939 1.0278151838506304 1.0119973100976365 1.0150038399234758 1.0 19.008323639754877 4.7247995984963245 3.5334334894415096 0.9903636412580913 0.7586464378874304 0.74290317769384 0.03692313608445407 0.14493925037395639 3.2332850378875397 0.009820710007351697 0.08770576107583036 53063.952862022576 -4.7247995984963245 -0.23171720337066093 VYEIGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYEIGR 6 0 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 ; 120.06 0.047651 588240000.0 552590.0 681330.0 600940.0 628040.0 630830.0 639600.0 647180.0 580500.0 751320.0 664610.0 False True 549614.9168385213 704007.6571773168 685547.1285358839 707549.7996056072 711162.4612776515 595385.9574564511 615873.4309323136 623819.8577192727 566167.2531722072 622194.0207987523 0.8833497244684924 1.1314921610360942 1.1018221095339376 1.1371851479660282 1.142991474531826 0.9569136596525215 0.9898414487199273 1.0026130706277654 0.9099528993309517 1.0 19.24700500526951 2.7263200199694335 24.756079343863906 0.9760698886184292 1.0867234046056646 0.3395076111734143 0.07450558261142774 760.0024665180058 1537069.858423732 0.02372615122815437 0.022515393997314503 532.5005000865692 -2.7263200199694335 0.11065351598723538 VYELPFLVALDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYELPFLVALDHR 13 0 E7ET49;Q8NCG7-2;Q8NCG7-4;Q8NCG7 E7ET49 DAGLB Sn1-specific diacylglycerol lipase beta 0 ; 140.82 3.9547e-05 123723000.0 135537.0 184379.0 182392.0 159036.0 157886.0 169122.0 164687.0 142925.0 197765.0 172835.0 False True 134807.28385157633 190515.94355554087 208071.20822031595 179169.94129367147 177991.84623636026 157430.99421036566 156720.46064456546 153590.78925844454 149028.4656652314 161804.52232851175 0.833149048688992 1.1774451097771934 1.285941858892355 1.1073234463119808 1.100042468992204 0.972970297398323 0.9685789889504811 0.9492366903479319 0.9210401756426738 1.0 17.303892405132643 2.7417176287764735 3.0596073819224956 0.9559780514540104 1.118799648971255 0.28621668230792574 0.10792253506230287 0.3154495232809382 6.044513819168458 0.03668227368842988 0.036719942593832725 551.7186041569913 -2.7417176287764735 0.16282159751724468 VYENYPTYDLTER ddPTM_BT-474_Trastuzumab_2h_R1 1 VYENYPTYDLTER 13 0 H0Y993;A0A494C028;P35659;B4DFG0;P35659-2;A0A494C198 H0Y993 DEK Protein DEK 0 107.09 0.0030764 210070000.0 62980.0 58077.0 62320.0 71877.0 69210.0 68288.0 80127.0 63606.0 78918.0 63116.0 False True 62640.922677735776 60010.05783671215 71094.1143048495 80976.62083028512 78023.48326019099 63567.411292661134 76250.95089513501 68352.60270472363 59469.71634702151 59087.88284367379 1.060131445959269 1.0156068376231742 1.2031927847701036 1.3704437683868518 1.3204650345420952 1.0758112870762122 1.2904667966674115 1.156795596917241 1.0064621286966384 1.0 15.850574686709093 1.2782581630323284 4.25341092407928 0.9981077572371537 1.1940241427412501 0.31177525693664154 0.10974651035953312 0.2557950663221078 8.898826054526632 0.0949956680568556 0.029760362111784802 18.978337387138662 -1.2782581630323284 0.1959163855040964 VYFQS(ph)PPGAAGEGPGGADDEGPVRR ddPTM_BT-474_Trastuzumab_2h_R1 1 VYFQSPPGAAGEGPGGADDEGPVRR 25 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 1 VYFQS(1)PPGAAGEGPGGADDEGPVRR 121.75 0.00010994 203760000.0 100790.0 117020.0 114110.0 120860.0 114020.0 108410.0 110080.0 116200.0 118860.0 110490.0 True False 100247.35783882173 120914.93995991608 130175.69613809971 136160.8636079451 128539.77115051243 100915.8718696901 104755.00985356336 124871.43405164406 89568.5456424008 103438.43360475182 0.9691499991374242 1.1689556361801037 1.2584847972032671 1.3163469211862664 1.2426693509462376 0.9756129163295274 1.01272811471452 1.2072053848842084 0.8659116589550342 1.0 16.65841280775478 2.7434622347099573 24.88055573140389 1.040082213343366 1.2005893069364602 0.3542802672678351 0.11741548161756889 513.3606922791049 2605815.9482181277 0.038113151318246 0.039249590003653204 553.939372498405 -2.7434622347099573 0.16050709359309412 VYFQSPPGAAGEGPGGADDEGPVRR ddPTM_BT-474_Trastuzumab_2h_R1 5 VYFQSPPGAAGEGPGGADDEGPVRR 25 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 0 ;;;; 279.16 5.586e-53 9129740000.0 1285953.0 1625656.0 1479501.0 1551415.0 1431781.0 1482236.0 1506511.0 1404704.0 1556930.0 1606792.0 False True 1279029.5719308106 1679764.9772301954 1687801.880746776 1747823.9799298353 1614109.8235191368 1379772.514128235 1433635.3074991063 1509530.1454223809 1173245.4632931428 1504245.1589161574 0.8502799988084258 1.1166829869942902 1.1220258019396754 1.1619276083887695 1.0730364089601852 0.9172524212226099 0.9530596119930829 1.0035133810967565 0.7799562832819702 1.0 20.520608283101154 2.7453958080318928 23.218555684703354 0.9388732188596225 1.076249732543674 0.3139685942320548 0.09797029266147304 246.95131379306144 838870.89989229 0.030031213762876513 0.031155663273431253 556.411129164729 -2.7453958080318928 0.13737651368405146 VYGVESDLSEVAR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYGVESDLSEVAR 13 0 P53602;H3BP35 P53602 MVD Diphosphomevalonate decarboxylase 0 ; 128.01 0.00039601 208103000.0 151901.0 192208.0 175578.0 187812.0 185148.0 194533.0 204845.0 169445.0 204151.0 214250.0 False True 151083.18189378767 198605.52708781025 200297.8562486657 211588.9799432017 208725.5003418268 181085.39159142555 194935.864766108 182089.84632427566 153840.72153324718 200576.3815713466 0.7532451264210597 0.990174045079005 0.9986113752751001 1.0549047613960363 1.0406285062410574 0.9028250992104574 0.9718784596618508 0.9078329407368677 0.7669932039257814 1.0 17.61379220902111 1.5845872692240652 4.477048572802623 0.870469635721993 0.9659434983540066 0.0886712861322122 0.09599044346658561 0.3063463756764402 13.630132316401582 0.05492125761013337 0.024481212856015816 38.42264597366166 -1.5845872692240652 0.09547386263201363 VYIGEEEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VYIGEEEKK 9 1 Q8TBX8;Q8TBX8-3;Q8TBX8-2;H0YIJ6 Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma 0 ; 136.63 0.00030019 833360000.0 870790.0 661830.0 595770.0 565640.0 608720.0 878440.0 885650.0 793460.0 1327710.0 782160.0 False True 866101.7633938642 683858.6114653161 679649.2374743281 637249.9660036236 686236.8838338876 817715.5104253349 842807.7259884481 852672.01430824 1000513.6609025056 732241.8791591336 1.1828082878685495 0.9339244734958643 0.9281758621274161 0.8702724934763447 0.9371724062299255 1.1167286844674256 1.150996344208395 1.1644676965040592 1.3663704431265806 1.0 19.481960762593605 2.575278505584476 3.056928185436855 1.1792577324195284 0.9605847477993892 0.41296883859945754 0.11339800535917438 0.24202217857005262 4.356087013804953 0.039313695673668964 0.03583712894583403 376.07849965098376 -2.575278505584476 -0.21867298462013918 VYLCNQDENHK ddPTM_BT-474_Trastuzumab_2h_R1 1 VYLCNQDENHK 11 0 A0A3B3ISU0;Q02487 A0A3B3ISU0 DSC2 Desmocollin-2 0 136.48 9.8418e-05 123140000.0 77994.0 86659.0 87841.0 78146.0 88203.0 100890.0 91278.0 90812.0 117760.0 96776.0 False True 77574.08896994805 89543.3924285283 100208.24927234075 88039.27558751017 99435.12922986007 93915.71176951425 86862.5344241784 97588.8525739924 88739.62590315584 90599.67282589797 0.8562292395803602 0.9883412338651654 1.1060553106511457 0.9717394427758252 1.0975219460333028 1.0366010035156372 0.9587510828112913 1.077143542907989 0.9794696066252192 1.0 16.46721821996106 4.682767326133447 3.573800726379104 1.031321368792898 0.8452695627127742 0.5145967245392816 0.04988179199803763 0.17295864245098602 3.828538833773584 0.011125157292029779 0.07759218078592096 48168.966258335015 -4.682767326133447 -0.18605180608012373 VYLLYRPGHYDILYK ddPTM_BT-474_Trastuzumab_2h_R1 2 VYLLYRPGHYDILYK 15 1 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5H3F0;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 ; 141.29 2.8777e-06 2811300000.0 3962200.0 5447000.0 5452900.0 4653100.0 3245500.0 4371900.0 5069900.0 3797800.0 7947500.0 4501900.0 False True 3940867.955441801 5628300.102218962 6220620.922543542 5242181.982906912 3658795.1874143854 4069680.8433456174 4824649.5681012 4081211.120837643 5988945.116043916 4214584.887729496 0.9350548299348282 1.3354340349402882 1.475974761038625 1.2438192900489922 0.8681270599310367 0.9656184302264839 1.1447508346902373 0.9683542340598804 1.4210047431908088 1.0 22.006959110359567 3.432740269098494 17.765405415021313 1.0549577924342195 1.2745508065648594 0.18588334875020496 0.1884135974221156 10.43422665544227 4175.746631202781 0.051598248386461924 0.06986547491002147 2708.57127958067 -3.432740269098494 0.21959301413063992 VYMGHGGKPWVSDFSHPHYLAGR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYMGHGGKPWVSDFSHPHYLAGR 23 1 Q96KP4;Q96KP4-2 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ; 216.82 8.3732e-33 4567200000.0 1749150.0 2270240.0 2092170.0 2235860.0 2314840.0 2127560.0 2248170.0 662987.0 2807150.0 1790340.0 False True 1739732.770748833 2345803.5660109394 2386729.350532366 2518919.646752107 2609621.152868375 1980486.7849375338 2139417.4282565904 712462.456519771 2115365.4963828465 1676078.9684128112 1.0379778062583171 1.3995781882713643 1.4239957636318987 1.5028645393345856 1.5569798333187106 1.181619018114037 1.2764419031416787 0.4250769026679264 1.2620917846048891 1.0 20.67665869249847 1.9289274176700908 10.046478384162889 0.8354708957763549 1.3605429218410996 0.4135401076866788 0.24040925029292295 0.4599578213738819 63.20344418537902 0.09788848880806911 0.06226520314698348 84.9038565917573 -1.9289274176700908 0.5250720260647447 VYNVTQHAVGIVVNK ddPTM_BT-474_Trastuzumab_2h_R1 2 VYNVTQHAVGIVVNK 15 0 P46778;M0R181;G3V1B3 P46778 RPL21 60S ribosomal protein L21 0 ; 154.13 2.5319e-06 2162580000.0 3129000.0 3051300.0 2963100.0 2539900.0 3054300.0 3281800.0 3431500.0 3117700.0 4175200.0 3580800.0 False True 3112153.811664585 3152860.675950196 3380278.724273098 2861451.0795781827 3443247.0007455726 3054936.890526235 3265505.2353970073 3350358.605359818 3146277.9048136626 3352270.278322883 0.9283719847379291 0.940515058209313 1.0083550679464388 0.853586030363204 1.0271388387180418 0.9113038737600234 0.974117527608996 0.9994297378181507 0.9385513826730353 1.0 21.67670704099764 2.023828444696218 24.762700265096324 0.9811411809107412 0.9467845304645789 0.10215747511595552 0.04803637035665918 452.3817036956836 470116.447172179 0.01670895579076633 0.012339861496635619 105.64001268798852 -2.023828444696218 -0.03435665044616232 VYQHQVVANCR ddPTM_BT-474_Trastuzumab_2h_R1 1 VYQHQVVANCR 11 0 P34896-2;P34896;P34896-4 P34896-2 SHMT1 Serine hydroxymethyltransferase, cytosolic 0 106.4 0.0023366 102500000.0 82317.0 91732.0 101260.0 81342.0 67695.0 86077.0 85975.0 77380.0 114360.0 90412.0 False True 81873.8144182784 94785.24416683492 115516.52783230196 91639.88885981686 76315.55699029939 80126.69959346304 81816.06079360562 83154.4885276783 86177.5103454901 84641.82875439241 0.9672973235946256 1.1198392752344228 1.3647688091369048 1.082678507877363 0.9016293493816917 0.9466560537812687 0.9666149940003493 0.9824278344572402 1.0181432940863533 1.0 16.369083177918107 3.4584353344055194 9.385892026050593 0.9699572458228821 1.160193758114824 0.4324851782077478 0.09449603992440395 0.21772161627260628 100.15804188864468 0.02662485413533147 0.03647074408714665 2873.659679481709 -3.4584353344055194 0.19023651229194194 VYQSLCPTSWVTDWDEQR ddPTM_BT-474_Trastuzumab_2h_R1 4 VYQSLCPTSWVTDWDEQR 18 0 P14854 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 ;;; 314.17 6.884899999999997e-61 740439000.0 429428.0 491172.0 528208.0 448032.0 494770.0 652452.0 521306.0 436380.0 542656.0 478839.0 False True 427116.0073619357 507520.3631002566 602575.0951337593 504752.8052622442 557776.026768453 607349.528946805 496088.43719768984 468944.89149274037 408925.70001785806 448279.0850653073 0.952790396856707 1.1321526700856872 1.3441963170018816 1.1259789316039794 1.244260652238981 1.3548469004712178 1.1066508648856939 1.04610031365711 0.9122123106820473 1.0 18.774037664933047 1.6996877356263738 2.453485651973011 0.9639175181879199 1.195910809852628 0.40233416265316446 0.11261076761246708 0.2539303120338209 3.3189610962208667 0.07519091113617256 0.031883473684513955 50.08270018638396 -1.6996877356263738 0.23199329166470817 VYQWDDPDPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VYQWDDPDPR 10 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 183.67 3.8216e-06 35484700000.0 10778800.0 12005700.0 11848400.0 12179300.0 11181200.0 12760500.0 12575500.0 10858300.0 12465600.0 12167600.0 False True 10720768.138437258 12405302.4669011 13516551.73186102 13721198.13122824 12605059.54383537 11878396.669985993 11967175.02192483 11668601.483330185 9393619.910482178 11391053.35079353 0.9411568718261181 1.089039098042405 1.1865936639581645 1.2045592017416358 1.106575411040215 1.042782989788957 1.050576680960867 1.0243654492687737 0.8246489258895267 1.0 23.44139782598109 1.5912655523930304 2.0454510913205897 0.9154788420344021 1.1003050688813056 0.41056649576483095 0.08162060295065601 0.2839075424775697 2.5145914627557295 0.06543746026655076 0.023592259679302716 39.01804923372607 -1.5912655523930304 0.18482622684690353 VYRDDIGR ddPTM_BT-474_Trastuzumab_2h_R1 1 VYRDDIGR 8 1 A0A087WY71;Q96CW1-2;Q96CW1;C9JJ47;C9JJD3;C9JGT8 A0A087WY71 AP2M1 AP-2 complex subunit mu 0 78.192 0.028512 422470000.0 338750.0 279870.0 258730.0 267610.0 259310.0 320360.0 294760.0 286750.0 381710.0 297390.0 False True 336926.20763866283 289185.303765012 295156.9350785255 301489.3985613284 292331.5914492139 298214.2672463233 280501.3327074521 308148.741086996 287642.68515195017 278410.3155916117 1.2101786060717865 1.0387018280932006 1.060150858459852 1.0828959333660986 1.0500027300641501 1.0711322481447172 1.007510559051654 1.1068150992616463 1.0331610182644275 1.0 18.086853141001153 4.742413948068078 24.894173549108128 1.0556940039314024 1.2101786692463838 0.6979456666283876 0.031406754227007734 186.85572041711384 1207116.2965071653 0.00690986239155858 0.051345426062601174 55260.39031111305 -4.742413948068078 0.1544846653149814 VYS(ph)SSEFLAVQPTPTFAER ddPTM_BT-474_Trastuzumab_2h_R1 1 VYSSSEFLAVQPTPTFAER 19 0 O60307;V9GYV0 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 VY(0.001)S(0.492)S(0.492)S(0.016)EFLAVQPTPTFAER 86.455 0.0030145 52752000.0 42058.0 41567.0 41089.0 36674.0 38544.0 40908.0 36779.0 33743.0 45131.0 43133.0 True False 41831.564401083095 42950.532467217876 46873.97404800964 41316.92463973006 43452.34993181329 38080.12624707395 34999.85926057599 36261.07400348218 34009.06977441686 40380.215011980814 1.0359420916573046 1.0636528917558872 1.1608153654977351 1.0231972422006996 1.076080202121781 0.9430392145206651 0.8667576249951005 0.897991107593744 0.8422211165623156 1.0 15.30136097213792 2.6376464036518876 3.0058634526329375 0.8929784385446152 1.0752681007363 0.7123644493745045 0.05172439800023318 0.12974642227134967 2.2639708957980087 0.01710769727003231 0.01607653180566569 434.156596148165 -2.6376464036518876 0.18228966219168485 VYSGHQGR ddPTM_BT-474_Trastuzumab_2h_R1 6 VYSGHQGR 8 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ;;;;; 169.57 0.00030026 609198000.0 410716.0 620956.0 632920.0 626387.0 601573.0 536089.0 584776.0 550331.0 699630.0 643261.0 False True 408504.7506908372 641624.1450841709 722029.6345607404 705687.5299750946 678179.7557474762 499030.42924776586 556488.1508187441 591399.4937441944 527215.5610616931 602207.5322565509 0.6783454686461927 1.0654535367233298 1.198971444038902 1.1718344460601324 1.126156215958056 0.8286685279040487 0.9240803560418943 0.9820526347921001 0.8754715489627755 1.0 19.199901227469866 2.7479040427245818 24.62895947614165 0.9262261829038891 1.0643634860124127 0.15879680411916686 0.14253282698027275 994.3330297620174 2621027.696968331 0.04514749896905249 0.04728503017996044 559.6339368318656 -2.7479040427245818 0.13813730310852357 VYSPHVLNLTLIDLPGITK ddPTM_BT-474_Trastuzumab_2h_R1 1 VYSPHVLNLTLIDLPGITK 19 0 P50570-2;P50570-5;P50570;P50570-3;P50570-4;E5RHK8;Q9UQ16-5;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;E5RIK2 P50570-2 DNM2;DNM3 Dynamin-2;Dynamin-3 0 164.35 2.3926e-11 105260000.0 173680.0 219090.0 223110.0 205270.0 211580.0 255380.0 238180.0 232510.0 291170.0 281610.0 False True 172744.92617766198 226382.27820729843 254521.94869311556 231257.16095319248 238523.45886708837 237726.1816998567 226658.32346404172 249861.07686185694 219415.05497810716 263637.40870154905 0.6552367777716175 0.8586879962227768 0.9654242542690417 0.8771788574776478 0.9047405678953135 0.9017164251108796 0.8597350602874059 0.9477451553345845 0.8322607025260825 1.0 18.00819556981712 4.710325902425745 3.4127280044432093 0.9072695541865085 0.6304987120724742 0.7201647391459206 0.04762127740222369 0.12853291016069693 2.573738145839665 0.010414809917495249 0.08866887889235038 51324.63888791724 -4.710325902425745 -0.27677084211403424 VYTDVNTHRPR ddPTM_BT-474_Trastuzumab_2h_R1 4 VYTDVNTHRPR 11 1 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;Q8NEV1;A0A2R8YFU2;A0A2R8YF43;A0A2R8YDP2;A0A2R8Y4H0;A0A2R8Y4D6;V9GYA2;A0A2R8YEW1;A0A2R8YDY7;A0A2R8YCK2;V9GY80;A0A2R8Y7T1;A0A2R8YF47;A0A2R8YEL7;A0A2R8Y797;A0A2R8Y3W6;A0A2R8YCC9 P68400 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 0 ;;; 131.83 0.00011732 2535590000.0 3445540.0 3414460.0 3705260.0 3910350.0 3667620.0 3994530.0 3377830.0 3600460.0 4927670.0 4168550.0 False True 3426989.5954754786 3528108.237015341 4226928.40130274 4405399.909062785 4134669.6673131245 3718397.5432121907 3214431.4583363123 3869144.6079654284 3713311.7558950786 3902509.570124789 0.8781502092167567 0.9040613927059566 1.0831308227048313 1.1288633198462381 1.0594899494842012 0.952822145953966 0.8236831711942543 0.9914503830010355 0.951518936512522 1.0 21.895970739452956 2.563267430175443 7.485332691869657 0.9356508188247172 1.0148948673290394 0.13498037928366635 0.08406610698776276 0.5623662601249086 43.16457528029233 0.029823908976814657 0.02803519693674412 365.8199871711871 -2.563267430175443 0.0792440485043222 VYTDVQQVASSLTHPR ddPTM_BT-474_Trastuzumab_2h_R1 2 VYTDVQQVASSLTHPR 16 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 ; 204.13 2.5996e-11 1033890000.0 531580.0 792650.0 773690.0 795560.0 817900.0 777000.0 846520.0 716940.0 775880.0 779650.0 False True 528718.0323440905 819032.8760829557 882618.8269659652 896277.8144293956 922054.7169268912 723287.8188612608 805570.5935795637 770441.703347554 584674.7702593455 729892.0695080529 0.724378376518663 1.1221287506726627 1.2092456732141919 1.2279593817665215 1.2632754285826888 0.9909517435211437 1.1036845408150797 1.0555556575191063 0.8010427769867622 1.0 19.47732362021365 1.4033450015409636 5.33835681817796 0.9020216714361963 1.102913923502534 0.19528269278486632 0.1513418497243297 0.31117229526361967 13.947478344493131 0.1048174508324821 0.03821614094177491 25.313080574390145 -1.4033450015409636 0.20089225206633776 VYVGNLGNNGNKTELER ddPTM_BT-474_Trastuzumab_2h_R1 4 VYVGNLGNNGNKTELER 17 1 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 ;;; 304.8 8.8068e-47 5134120000.0 1057890.0 1347070.0 1319750.0 1364700.0 1281790.0 1384860.0 1496550.0 1222740.0 1981490.0 1484070.0 False True 1052194.4377826287 1391906.410628989 1505559.328527361 1537470.8800741557 1445018.3587354436 1289127.887809787 1424156.15912382 1313987.0677479107 1493178.3401056775 1389355.3820237487 0.7573256284148062 1.0018361238875575 1.0836387493128996 1.1066073518459048 1.040063886772163 0.9278604340467812 1.0250481464644274 0.9457530339242248 1.0747274307389225 1.0 20.405984241577343 4.734129147106952 4.884317756057543 1.0208477855798237 0.7442127160110628 0.6848238632784664 0.05416338948830238 0.1027554885784154 7.334607766502517 0.013961589713723833 0.09610947286199457 54216.20903675837 -4.734129147106952 -0.27663506956876094 VYVGSIYYELGEDTIR ddPTM_BT-474_Trastuzumab_2h_R1 3 VYVGSIYYELGEDTIR 16 0 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-2;Q9UHX1;A0A0J9YYL3;A0A0J9YXJ8;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19 A0A0J9YVP6;E9PN18 PUF60 Poly(U)-binding-splicing factor PUF60 0 ;; 198.49 3.1158000000000003e-09 142948000.0 37141.0 41228.2 37271.9 41075.0 36860.7 37540.0 38522.0 32187.2 46287.0 43096.0 False True 36941.036982753016 42600.455714026786 42519.45954683756 46275.090788485366 41554.6916545141 34944.94815965474 36658.543691669394 34589.17230728983 34880.18906402326 40345.57638365813 0.9156155468314461 1.0558891341376893 1.0538815740914773 1.1469681421438056 1.029968967585396 0.8661407592087121 0.9086137063224071 0.8573225470463246 0.8645356490222652 1.0 15.300122880085619 2.7840297073432945 5.9708262488424255 0.888643123417088 1.049036889170262 0.535070392434487 0.06524438063295335 0.14660415223133463 13.459057980134245 0.01992522593754852 0.020932827417584853 608.1766013770667 -2.7840297073432945 0.160393765753174 VYVPALIFGQLLTSSNYDDDEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 VYVPALIFGQLLTSSNYDDDEKK 23 1 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 ; 231.93 2.3768000000000003e-33 171959000.0 110569.0 107831.0 103715.0 90275.0 79493.0 140069.0 142999.0 144320.0 239520.0 120348.0 False True 109973.70878937072 111420.08964978393 118317.17049305934 101703.80574389565 89615.9623580747 130386.35971696 136081.59206077128 155089.8912421109 180493.50540356585 112667.28760489353 0.9760926274805801 0.9889302566732295 1.0501466131676043 0.9026915256942628 0.7954035662271715 1.1572690040626918 1.207818124973311 1.3765299097816819 1.6020045324648997 1.0 16.78170917130624 2.2988504643637726 2.1050250139376203 1.351257499457409 0.9513507535929412 0.5288056065727362 0.1557684589301278 0.22461273894989847 2.034967982758664 0.06788217051350262 0.04787659873668668 198.99880312645132 -2.2988504643637726 -0.3999067458644677 VYWNDGLDQYR ddPTM_BT-474_Trastuzumab_2h_R1 3 VYWNDGLDQYR 11 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 ;; 218.6 2.4407e-11 634601000.0 640660.0 763800.0 746450.0 751110.0 537930.0 662890.0 714950.0 588240.0 870460.0 690650.0 False True 637210.7577440176 789222.6212731507 851543.6717402904 846200.4489869563 606432.1969390905 617065.9745752139 680365.137125772 632137.4558221961 655946.7965664158 646572.1257047866 0.9855215410801003 1.2206258047590126 1.3170126547167147 1.3087487309549073 0.9379188691100128 0.9543652595641824 1.0522648751431245 0.9776750816981845 1.0144990334240136 1.0 19.302451787384427 3.232406951802567 24.999605175219585 0.9903236033589232 1.2166689104978987 0.5861325272105777 0.08983676376698654 102.89599765221409 418020.3778952448 0.026652330933794436 0.03262238526477267 1707.6818076575244 -3.232406951802567 0.2263453071389755 VYYS(ph)PPVAR ddPTM_BT-474_Trastuzumab_2h_R1 4 VYYSPPVAR 9 0 O94964-2;H0YDM2;O94964;O94964-3 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 VYYS(1)PPVAR;VYYS(1)PPVAR;VYYS(1)PPVAR;VYYS(1)PPVAR 101.38 0.0042186 406510000.0 761120.0 895820.0 842350.0 837080.0 789430.0 858590.0 819600.0 738610.0 791800.0 768380.0 True False 757022.2144883818 925636.827165375 960945.5581625482 943054.2421722547 889959.231181803 799237.6942034613 779952.8168239504 793728.8287855837 596671.4995764175 719341.3305567858 1.052382481488211 1.2867838783139458 1.335868686175387 1.3109968829989378 1.2371862888692289 1.1110687795247827 1.0842597021642701 1.1034105716839882 0.8294692300171058 1.0 19.456316972572342 2.0143506026266347 0.9720882645555349 0.9463986187645392 1.2553114054680208 0.6063491648114798 0.09460222252743751 0.3781724753869828 0.6586971386692182 0.07730438664747308 0.03711675899690626 103.35954828030565 -2.0143506026266347 0.30891278670348155 VYYVDHVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 VYYVDHVEK 9 0 A0A590UJQ1;Q96J02-3;Q96J02-2;Q96J02;A0A590UK44;A0A590UK95 A0A590UJQ1 ITCH E3 ubiquitin-protein ligase Itchy homolog 0 ; 168.8 5.8953e-05 761340000.0 735090.0 779720.0 723070.0 657570.0 588540.0 787490.0 843240.0 641580.0 1018230.0 801170.0 False True 731132.357116176 805672.5088493064 824871.9709628931 740818.2945778287 663487.0804501188 733052.6698520647 802449.259710381 689457.9574772276 767300.8600829688 750038.644683854 0.9747929154028496 1.0741746636120362 1.0997726274631914 0.987706833279355 0.8846038602848028 0.9773532004621589 1.0698772195246267 0.9192299121705102 1.0230151013170674 1.0 19.51660540478859 3.577771384878971 7.479810426180969 0.9740700873306779 1.0514835249056211 0.2378690754130125 0.056575166947969956 0.3568587706955818 23.418953453140954 0.01504851976555526 0.023345225630205437 3782.4342278158774 -3.577771384878971 0.07741343757494323 WAELLS(ph)PLDESR ddPTM_BT-474_Trastuzumab_2h_R1 2 WAELLSPLDESR 12 0 Q9H6K5-2;Q9H6K5 Q9H6K5-2 PRR36 Proline-rich protein 36 1 WAELLS(1)PLDESR;WAELLS(1)PLDESR 175.21 2.9671e-05 41038000.0 74479.0 93432.0 81238.0 85477.0 88278.0 93969.0 93629.0 76345.0 88900.0 93085.0 True False 74078.01333939489 96541.82763916325 92675.60426664574 96298.37943584565 99519.6800353004 87473.14420923259 89099.80757248621 82042.25157205491 66991.78619896884 87144.23560592206 0.8500621162641855 1.1078395142019304 1.0634737182816918 1.1050458904857443 1.142011050338909 1.0037743013180802 1.0224406348046646 0.9414535683468611 0.7687460419288625 1.0 16.411117616042752 1.664167366152381 2.7116275191569974 0.8778923063595196 1.0526674950833141 0.32736733670073115 0.09233900492876476 0.23707493535383276 3.980368377199752 0.05778539971510005 0.024285515926526852 46.1495388992293 -1.664167366152381 0.1747751887237945 WAESVPEEAPGFSNTSLIILHQLEDK ddPTM_BT-474_Trastuzumab_2h_R1 1 WAESVPEEAPGFSNTSLIILHQLEDK 26 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 0 150.09 1.4257e-07 97397000.0 66396.0 69724.0 58616.0 55762.0 43450.0 77685.0 70593.0 75422.0 94495.0 80417.0 False True 66038.5313132891 72044.72119095188 66868.62330059463 62821.46348259337 48983.09995167313 72314.81880081983 67178.1468985519 81050.37262515585 71207.9734181277 75284.71821154251 0.8771837483369128 0.9569634170445247 0.8882097839922904 0.8344517317056478 0.6506380194455339 0.9605510987983304 0.892321157526127 1.0765846582225682 0.9458489732011806 1.0 16.200069426413574 2.113626204175141 2.218852839612088 1.009801106003024 0.8522955771299074 0.3555288444222878 0.08672627400796415 0.3372086253847262 3.248453663342387 0.045384773278200535 0.02717956345528053 129.90510078195456 -2.113626204175141 -0.15750552887311664 WAEYHADIYDK ddPTM_BT-474_Trastuzumab_2h_R1 6 WAEYHADIYDK 11 0 Q9NRX4;Q9NRX4-2 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 ;;;;; 164.9 2.2228e-05 4141750000.0 10542660.0 9774730.0 8568210.0 7652610.0 7609560.0 9819880.0 9736820.0 8789370.0 12347160.0 10119210.0 False True 10485899.489959635 10100075.979100943 9774539.491783602 8621429.641360229 8578592.360604217 9141054.809111077 9265812.818335494 9445277.420916507 9304367.86146749 9473393.354308456 1.1068789289944025 1.0661518635777405 1.0317886238027039 0.9100677359120998 0.9055458841158235 0.9649187431823221 0.9780880484733007 0.9970321159123872 0.9821578724202248 1.0 23.175449858643436 4.058348523289245 2.988786242587677 0.9633441943318956 1.088379044602226 0.706882120819541 0.03227052942254004 0.14890327685604685 2.684691098609167 0.009385613721532422 0.02321391892564582 11437.958679441255 -4.058348523289245 0.12503485027033034 WAHDKFS(ph)GEEGEIEDDES(ph)GTENR ddPTM_BT-474_Trastuzumab_2h_R1 7 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 WAHDKFS(1)GEEGEIEDDES(0.935)GT(0.065)ENR;WAHDKFS(1)GEEGEIEDDES(0.879)GT(0.121)ENR;WAHDKFS(1)GEEGEIEDDES(0.968)GT(0.032)ENR;WAHDKFS(1)GEEGEIEDDES(0.999)GT(0.001)ENR;WAHDKFS(1)GEEGEIEDDES(0.981)GT(0.019)ENR;WAHDKFS(1)GEEGEIEDDES(0.985)GT(0.015)ENR;WAHDKFS(1)GEEGEIEDDES(0.88)GT(0.12)ENR 335.13 1.4450999999999993e-86 6457360000.0 7254930.0 5119830.0 4398530.0 4272810.0 4850010.0 6198210.0 5357870.0 5311280.0 7577350.0 5851580.0 True False 7215870.262978492 5290240.446547413 5017804.791291867 4813747.307898919 5467630.025238523 5769742.331716928 5098689.359048974 5707634.683733358 5710013.623788034 5478127.154610318 1.3172148180068644 0.9657023828107418 0.9159708509264796 0.8787213534917192 0.9980838105659959 1.053232641170293 0.9307358546356459 1.0418952540979063 1.042329515659848 1.0 22.38525132262499 4.740057494449954 24.981002816692623 0.9802019237203687 1.3172149298796045 0.7679258950510809 0.055490705752973074 63.46520880768109 1059053.86944963 0.014168467047713153 0.08899889885222398 54961.36301165244 -4.740057494449954 0.3370130061592358 WAHDKFS(ph)GEEGEIEDDES(ph)GTENREEK ddPTM_BT-474_Trastuzumab_2h_R1 3 WAHDKFSGEEGEIEDDESGTENREEK 26 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 WAHDKFS(1)GEEGEIEDDES(0.991)GT(0.009)ENREEK;WAHDKFS(1)GEEGEIEDDES(0.954)GT(0.046)ENREEK;WAHDKFS(1)GEEGEIEDDES(0.974)GT(0.026)ENREEK 217.1 2.0355999999999998e-34 2191430000.0 1285890.0 700060.0 578429.0 567983.0 772669.0 1052682.0 1026927.0 905509.0 1647820.0 1044520.0 True False 1278966.91111581 723361.073904793 659866.7754050024 639889.5895633914 871063.8171820327 979912.5710868837 977250.6177678972 973082.679661533 1241736.840656746 977857.8393414366 1.3079272463338465 0.7397405275105827 0.6748084934814313 0.6543789534829945 0.8907877833946425 1.0021012581407853 0.999379028781987 0.9951167138127975 1.2698541553780716 1.0 19.8992652163171 2.7175135330883697 2.555060487669139 1.0520158451205786 0.8211350323178102 0.22223092811160605 0.1872538587655728 0.43320140156206205 5.607030425041796 0.06615983127238795 0.0650344805554437 521.8113641952623 -2.7175135330883697 -0.2308808128027684 WAHDKFS(ph)GEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_BT-474_Trastuzumab_2h_R1 3 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 WAHDKFS(1)GEEGEIEDDES(0.83)GT(0.17)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.846)GT(0.154)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.994)GT(0.006)ENREEKDNIQPTTE 232.78 3.6345999999999997e-38 2119730000.0 570890.0 413850.0 365657.0 395103.0 413588.0 619280.0 608460.0 532950.0 1007970.0 633110.0 True False 567816.3916718417 427624.7470723923 417138.32725238014 445122.9992891767 466255.98027186585 576470.6312283163 579026.465257077 572721.4352652641 759569.2996060135 592704.3777672593 0.9580094444566589 0.7214806623890169 0.7037881664106425 0.7510033939110972 0.786658573416094 0.9726107193604743 0.9769228758496648 0.9662851444133556 1.2815314482193314 1.0 19.1769531878556 2.3181034157506115 1.0761755674672542 1.090327880714625 0.7686951001278788 0.6119583968450342 0.10396207512962541 0.3454638902594288 0.7797673639641245 0.06893034073185642 0.04181660179502616 208.0191970861511 -2.3181034157506115 -0.32163278058674627 WAHDKFS(ph)GEEGEIEDDESGT(ph)ENREEKDNIQPTTE ddPTM_BT-474_Trastuzumab_2h_R1 1 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 WAHDKFS(1)GEEGEIEDDES(0.182)GT(0.818)ENREEKDNIQPTTE 136.18 1.0627e-08 1058400000.0 347730.0 264780.0 220870.0 257750.0 294020.0 435980.0 383510.0 317390.0 761090.0 448240.0 True False 345857.8603164349 273593.0422371097 251966.57616354476 290381.1235722973 331461.70420692564 405841.7287865282 364958.156149528 341075.25347376347 573529.5675835 419632.9394424286 0.8241914011230397 0.65198180724477 0.6004451807294628 0.6919883933757207 0.7898848566257521 0.9671350617179268 0.8697080754300469 0.8127942814187903 1.3667410579006398 1.0 18.678768402364074 2.1478415969483673 0.6929190656493902 1.0956357883044865 0.6802249777930945 0.5398464186182416 0.14151128859290196 0.5884537246784234 0.5445145103145712 0.12439553412985757 0.07678314071009684 140.55347807833652 -2.1478415969483673 -0.41541081051139195 WAHDKFS(ph)GEEGEIEDDESGTENR ddPTM_BT-474_Trastuzumab_2h_R1 9 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR 334.33 7.094199999999996e-87 19127680000.0 5258769.0 4618759.0 4181552.0 3746601.0 4159102.0 5125076.0 5174473.0 4575347.0 6467770.0 5020252.0 True False 5230456.372008156 4772491.601216225 4770278.174898452 4220920.3024523435 4688738.9867710825 4770791.559251218 4924163.972583552 4916782.62628131 4873874.747177775 4699855.219306025 1.1128973400122055 1.0154550254254269 1.014984069148161 0.8980958147633322 0.9976347712820431 1.0150933032264062 1.0477267368484275 1.0461561892554037 1.0370265720435206 1.0 22.164184884070533 2.4178660906395715 4.684531614225133 1.037811217377608 1.0028035169153013 0.04411094937290638 0.05002628964083072 0.5433262172480465 24.426431381813334 0.018508458844112705 0.015492518108965035 261.7375848144887 -2.4178660906395715 -0.03500770046230661 WAHDKFS(ph)GEEGEIEDDESGTENREEK ddPTM_BT-474_Trastuzumab_2h_R1 1 WAHDKFSGEEGEIEDDESGTENREEK 26 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 WAHDKFS(1)GEEGEIEDDESGTENREEK 270.14 7.906199999999996e-55 738770000.0 572880.0 445460.0 356090.0 367300.0 463480.0 633610.0 597190.0 571330.0 941250.0 643930.0 True False 569795.6777329514 460286.86681374296 406224.3768102352 413800.14233988273 522501.4307388141 589810.032057507 568301.6382126585 613965.5457549556 709291.5496038176 602833.8361037909 0.9451952488527016 0.7635385395561881 0.6738579563412145 0.686424877897262 0.8667420430741286 0.9783956983395975 0.942716888430949 1.0184656351128376 1.1765954515560697 1.0 19.201400869821715 2.673103531282302 1.4857806235967108 1.0410233481354698 0.7613037867397938 0.6530972743990734 0.0886935271795257 0.25589108368439234 1.140333645723253 0.04020107636989775 0.036446017169392414 471.08961587120314 -2.673103531282302 -0.279719561395676 WAHDKFS(ph)GEEGEIEDDESGTENREEKDNIQPTTE ddPTM_BT-474_Trastuzumab_2h_R1 4 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE 333.41 1.553699999999999e-117 2405290000.0 1669709.0 1575251.0 1542975.0 1727733.0 1646163.0 2326172.0 2456378.0 1999333.0 4425386.0 2506534.0 True False 1660719.4722661104 1627682.2772756626 1760212.4682208793 1946463.820651545 1855792.1004774687 2165369.2048598933 2337553.6118647875 2148533.380867261 3334808.9174343017 2346564.854168276 0.7077236622359373 0.6936447012680516 0.7501230852810905 0.8294950029588916 0.790854809395516 0.9227825947420464 0.9961598153626645 0.915607926646798 1.4211450033058226 1.0 21.162118903329375 2.30775767272805 0.7367817079600948 1.1431174408530542 0.7183820722924842 0.634813809170016 0.1224261276243613 0.4450231942183599 0.4708507666013914 0.09678337847106368 0.06416221346545463 203.1223314389214 -2.30775767272805 -0.42473536856057004 WAHDKFSGEEGEIEDDES(ph)GTENR ddPTM_BT-474_Trastuzumab_2h_R1 1 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 WAHDKFSGEEGEIEDDES(1)GTENR 263.55 4.1401e-44 219660000.0 184680.0 238420.0 193460.0 256360.0 236980.0 270840.0 256270.0 256940.0 402450.0 287540.0 True False 183685.70339987698 246355.66557206638 220697.48641553536 288815.1497148167 267157.9983094936 252117.46828878208 243873.2410535309 276114.1675148833 303271.59005371196 269188.9510246211 0.6823671725778833 0.9151774789951677 0.8198608656688494 1.0729086339372098 0.9924552894634159 0.9365817851332331 0.9059556126849548 1.025726228598546 1.126612325280667 1.0 18.038259669566617 5.5349644172388155 0.6935729966174203 1.00437365185602 3.955609202915673e-12 0.6267688715602779 0.0743679629801105 5.467565417715466 0.8879539965649148 0.028696186124436713 5.556016659249626 342739.7039316272 -5.5349644172388155 -1.0043736518520645 WASLADS(ph)YSDPGLTEDGLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 WASLADS(0.516)Y(0.002)S(0.482)DPGLTEDGLGR;WASLADS(0.54)Y(0.002)S(0.458)DPGLTEDGLGR 114.59 0.00012797 49267000.0 123387.0 128215.0 107525.0 116229.0 113670.0 125693.0 114479.0 121881.0 150986.0 141681.0 True False 122722.69810158429 132482.55876739576 122663.58537594577 130943.57948277223 128145.20072512486 117004.13875949614 108941.21341775132 130976.37911917754 113777.52340874588 132638.79728079328 0.92523982890001 0.998822075315816 0.9247941619695916 0.9872192915438436 0.966121552307538 0.8821260532979733 0.8213374642347313 0.9874665769315109 0.8577997218105158 1.0 17.017143304621186 2.7542755828373755 23.927657162270815 0.9081590054224171 0.9620792428671999 0.1747252695625714 0.05497447607690534 778.3637264186702 1185136.5874862506 0.016203130587124775 0.01712330718882397 567.9048567898428 -2.7542755828373755 0.053920237444782804 WASLADSY(ph)SDPGLTEDGLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 WASLADS(0.08)Y(0.46)S(0.46)DPGLTEDGLGR 125.53 0.00025705 108700000.0 131570.0 108940.0 105810.0 122000.0 106580.0 128350.0 121610.0 108810.0 148040.0 146280.0 True False 130861.6417388011 112566.00204437935 120707.12828299293 137445.18749105823 120152.3312508474 119477.46660340125 115727.259704686 116929.95472598459 111557.52563436815 136944.2851633914 0.9555830795178275 0.8219839324443092 0.8814323879158188 1.0036577088782432 0.8773811269852617 0.8724531035438967 0.8450681937300933 0.8538505610984258 0.8146197959357433 1.0 17.063229536475255 3.0179557426375587 24.998884753014718 0.8655018672423163 0.9107766450114505 0.0636927718194713 0.0637652572785123 571.2460449996125 795311.8214417358 0.017906220349463053 0.02139854022534905 1042.2112160478152 -3.0179557426375587 0.045274777769134245 WASLADSYS(ph)DPGLTEDGLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 WASLADS(0.063)YS(0.937)DPGLTEDGLGR;WASLADS(0.048)YS(0.952)DPGLTEDGLGR 192.62 1.0835999999999997e-17 128107000.0 236658.0 238141.0 212287.0 225489.0 232629.0 256957.0 214313.0 219538.0 284387.0 267110.0 True False 235383.85962317567 246067.37922572557 242175.16436831802 254035.8842800917 262252.9242498908 239194.16740171541 203945.8614348358 235921.04035137573 214303.63444056408 250062.81111562354 0.9412989423458866 0.9840222867523849 0.9684573379299554 1.0158883008102757 1.0487482048205512 0.9565363451469691 0.8155785361484068 0.9434471255395551 0.8569992214535044 1.0 17.93193099293771 2.468979743996002 24.997287890378452 0.8991622755005686 0.9924448894002738 0.3788152692957848 0.05279703293060718 177.48204827026052 544927.4263573382 0.017286189084804893 0.0144862931094358 294.4284305722995 -2.468979743996002 0.09328261389970516 WATHGEPSPVNSHPQR ddPTM_BT-474_Trastuzumab_2h_R1 4 WATHGEPSPVNSHPQR 16 0 Q06210-2;Q06210;A0A6I8PRN4;A0A6I8PTT9 Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 ;;; 180.74 1.3985e-09 1703450000.0 488809.0 643550.0 596910.0 636300.0 619260.0 614760.0 628110.0 522027.0 695640.0 636230.0 False True 486177.30665578553 664970.1727158105 680949.7395652707 716855.5147586915 698119.0903584147 572263.0881893797 597725.9196867875 560983.3055393947 524208.84309843276 595625.2566960925 0.8162469626499553 1.1164237332788256 1.1432519556717078 1.2035344483796035 1.1720777158289946 0.9607770687289156 1.0035268198705127 0.9418393515599804 0.8800984128950415 1.0 19.184045405216537 2.715886832881648 22.145617044476733 0.9565895527044169 1.100989675684289 0.2864196440140969 0.10432892185471927 236.00316840709857 230504.28363092567 0.03457192675435912 0.032632522988386876 519.8605152308818 -2.715886832881648 0.14440012297987204 WCDKSDEDDWSKPLPPSER ddPTM_BT-474_Trastuzumab_2h_R1 4 WCDKSDEDDWSKPLPPSER 19 2 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6 A0A0D9SFB3;A0A2R8YFS5 DDX3X ATP-dependent RNA helicase DDX3X 0 ;;; 200.6 3.5938e-16 1567880000.0 1755975.0 1463680.0 1373258.0 1233120.0 1285708.0 1805007.0 1740697.0 1722073.0 2597920.0 1702275.0 False True 1746521.0257071631 1512397.703986754 1566600.7898274877 1389232.8655653573 1449435.2928116391 1680231.1146194434 1656492.8360017089 1850582.8317695102 1957697.4263444871 1593634.3521090506 1.0959358546681546 0.949024286521694 0.983036533916462 0.8717387798065573 0.9095155930175731 1.0543391665696644 1.0394434794967051 1.1612342751776206 1.2284483098357082 1.0 20.603889220665106 2.1811538296546393 1.822361715461944 1.141560884714044 0.9607311829898153 0.42598856321642975 0.07976922873400895 0.296859711879317 1.943564019342307 0.04193207480402999 0.02512453865912648 151.758781078119 -2.1811538296546393 -0.18082970172422863 WCNEHLK ddPTM_BT-474_Trastuzumab_2h_R1 3 WCNEHLK 7 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 Q60FE5;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 ;; 125.58 0.004035 1376220000.0 2506750.0 2644410.0 2815970.0 2071720.0 1527410.0 2244730.0 2645310.0 1807560.0 4230800.0 2426900.0 False True 2493253.936526105 2732427.5882703965 3212434.0991499806 2333999.539581765 1721916.609831647 2089557.0986260455 2517346.2492344584 1942449.305803701 3188176.029815488 2272013.164226376 1.0973765362733106 1.2026460195272646 1.4139152667470654 1.0272825775534165 0.757881440540844 0.9196940983999725 1.1079804857079774 0.8549463253066617 1.4032383614736084 1.0 21.115539763281685 3.555475307432746 9.060725043823407 0.9849109131939793 1.2330823176699062 0.2521738372427126 0.17751451207771513 0.5122428972203412 56.005025020473276 0.046242161507281325 0.07163644373097723 3593.149666979444 -3.555475307432746 0.2481714044759269 WDAENAIQQMGGQWLGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 WDAENAIQQMGGQWLGGR 18 0 C9JTN7;P31483-2;F8W8I6;P31483-3;P31483 C9JTN7 TIA1 Nucleolysin TIA-1 isoform p40 0 214.65 2.3114e-18 113780000.0 90703.0 117220.0 81469.0 105660.0 111040.0 104660.0 103630.0 112060.0 124840.0 115360.0 False True 90214.6651260507 121121.59683901379 92939.12705875777 119036.5451664362 125180.28581435638 97425.10054313969 98617.02099495598 120422.48622915 94074.8547702954 107997.62603533502 0.8353393351121808 1.1215209193522904 0.8605663890088625 1.1022144609687017 1.1591021989075896 0.9021040935776109 0.9131406366533477 1.1150475306721073 0.8710826174967556 1.0 16.720640074374707 4.767441908303958 23.0683154068689 1.0092839172494823 0.8353385852782477 0.18040850720474566 0.10811958031092855 6100.44333004904 4872365.463739619 0.02473807368957377 2.204831122904451 58538.542930014184 -4.767441908303958 -0.17394533197123463 WDAWNELK ddPTM_BT-474_Trastuzumab_2h_R1 4 WDAWNELK 8 0 P07108;B8ZWD1;A0A0A0MTI5;P07108-3;P07108-2;P07108-4;P07108-5 P07108 DBI Acyl-CoA-binding protein 0 ;;; 180.45 0.00055607 1949612000.0 2769260.0 2154959.0 1891595.0 1554289.0 1518487.0 2142440.0 2028124.0 1961535.0 2672260.0 2093390.0 False True 2754350.611853712 2226685.5076147756 2157915.1339615155 1751061.8280351572 1711857.3186724116 1994338.165561286 1930015.8939339386 2107914.7021729075 2013717.32944945 1959788.0579586518 1.4054328990669989 1.1361868945839626 1.1010961747614874 0.8934955088251189 0.8734910449732565 1.0176295122640058 0.9848084776801199 1.0755829915447832 1.0275179100473608 1.0 20.902266211284505 4.728844930054962 1.4620429608966357 0.9908613041079627 1.5617502274723292 0.8027437223114329 0.06296003081940764 0.5405063711710372 1.068873297703982 0.01909950067157283 0.4478735872826958 53560.53791756003 -4.728844930054962 0.5708889233643665 WDDPYYDIAR ddPTM_BT-474_Trastuzumab_2h_R1 5 WDDPYYDIAR 10 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 ;;;; 211.85 1.194e-07 2934700000.0 2962970.0 3548030.0 3341740.0 3173270.0 2915930.0 3063080.0 3436280.0 2903570.0 3937180.0 3190040.0 False True 2947017.698736916 3666124.033720576 3812227.9450752144 3575005.6566373003 3287256.401428822 2851336.4893147363 3270054.0085356343 3120249.137429708 2966914.744509064 2986448.916069349 0.9867966208562071 1.2275863866259564 1.2765086737504705 1.197075776987536 1.1007241355246031 0.9547581657842511 1.0949639858027627 1.0448024476964644 0.9934590638884945 1.0 21.50999961366737 3.0331548505170898 4.3531280691963286 1.0282608764219943 1.18206341202511 0.45726092466030155 0.07854506606286282 0.18805774564896235 8.177438095705282 0.023704305091950525 0.02789420947581217 1079.331496281245 -3.0331548505170898 0.15380253560311563 WDDQQK ddPTM_BT-474_Trastuzumab_2h_R1 3 WDDQQK 6 0 P09874;Q5VX84;Q5VX85 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;; 124.89 0.042251 1052380000.0 2734910.0 2428350.0 2326940.0 2226690.0 2146570.0 2581150.0 2787820.0 2644740.0 3762200.0 2855980.0 False True 2720185.548437068 2509176.1617814237 2654552.9258749406 2508588.7256923337 2419922.9657828044 2402721.1758735417 2652962.4960933947 2842103.928517603 2835056.22089719 2673708.911272504 1.0173828336243396 0.9384627291335265 0.9928354259819382 0.938243020815013 0.9050809366645247 0.8986472557814865 0.9922405856929147 1.0629818064842946 1.0603458771986871 1.0 21.350410975995885 1.9746777394020145 5.15071928214795 1.0444571137416894 0.9471925358494887 0.5532507283273863 0.037304328319616574 0.13675257601444654 10.01901212979579 0.01661410652677433 0.010510735078646818 94.33606123233288 -1.9746777394020145 -0.09726457789220067 WDDSQK ddPTM_BT-474_Trastuzumab_2h_R1 2 WDDSQK 6 0 Q16543;K7EKQ2 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed 0 ; 132.96 0.034132 242140000.0 772840.0 704750.0 641010.0 619960.0 638490.0 706420.0 845040.0 749050.0 1031280.0 792650.0 False True 768679.1153105969 728207.1777196283 731258.6362411998 698446.8724340698 719797.9168732747 657586.8481338113 804162.1868337119 804947.9145988291 777134.8624440103 742062.3983781923 1.0358685698002978 0.9813287660325531 0.985440898015309 0.9412239104966832 0.9699964833771695 0.8861611227990991 1.083685399760507 1.0847442430152445 1.047263497170144 1.0 19.50118097940392 2.212515244796098 24.993727753385667 1.064341661493827 0.9671840303778032 0.5016352327209619 0.04209451604235895 166.01942708137972 159314.98373385426 0.015695064969022364 0.011595225452246121 163.12301683823688 -2.212515244796098 -0.09715763111602382 WDEAFR ddPTM_BT-474_Trastuzumab_2h_R1 8 WDEAFR 6 0 P27695;G3V3M6;G3V5Q1;H7C4A8 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 ;;;;;;; 167.23 0.01564 6872630000.0 3987230.0 4574150.0 4510640.0 4010380.0 3696120.0 4114400.0 4383470.0 3811910.0 5092770.0 3958220.0 False True 3965763.196702898 4726397.81761794 5145698.904814289 4518093.696806473 4166798.973380395 3829981.2122558155 4171424.809618454 4096374.0806867755 3837725.0731217302 3705603.010797369 1.0702072470114785 1.2754733315593128 1.388626598645558 1.2192600458391447 1.12445908567086 1.0335649018785968 1.1257074212925064 1.1054541106402331 1.0356546726509517 1.0 21.82127689995218 3.197402868458716 3.229564720396623 1.0758002313651027 1.2549869783366374 0.5130648074467562 0.08099688560377319 0.20223952095433043 4.326959630529998 0.02447979734097595 0.03136276913877579 1575.4436296375532 -3.197402868458716 0.1791867469715347 WDEAFRK ddPTM_BT-474_Trastuzumab_2h_R1 1 WDEAFRK 7 1 P27695;G3V3M6;G3V5Q1;H7C4A8 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial 0 84.09700000000002 0.034947000000000006 776130000.0 1458700.0 1682700.0 1664000.0 1566200.0 1504900.0 1900200.0 1753400.0 1538500.0 2616700.0 1828400.0 False True 1450846.5212768046 1738707.6522863708 1898276.7362527202 1764480.759413898 1696540.094758869 1768843.64658966 1668581.3433615358 1653310.682344703 1971849.3469835923 1711709.946628004 0.8476006838278358 1.015772360096143 1.108994394752595 1.0308292961023275 0.9911376037166699 1.0333781433438574 0.9748037900045917 0.9658824998952976 1.15197633271224 1.0 20.70700682362528 4.734375486200399 5.704304455954726 1.0256651253012343 0.8422333877758961 0.49112295474561807 0.055689240019918644 0.11681338876244646 16.219784213233815 0.013412528774937295 0.08354677372756728 54246.970100527404 -4.734375486200399 -0.18343173752533826 WDEANAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 WDEANAEK 8 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 76.465 0.08312699999999999 243250000.0 133680.0 155400.0 128170.0 137000.0 134140.0 154500.0 143710.0 143910.0 178080.0 154770.0 False True 132960.28173324416 160572.3950587164 146215.22192638894 154344.18595307358 151221.9338899293 143819.77865388014 136758.19827448757 154649.2949601732 134194.57014974533 144892.44609473652 0.9176481267098588 1.1082178497678734 1.0091293636576992 1.0652327993148596 1.0436840426522602 0.9925968021814262 0.9438600973377836 1.067338561315041 0.9261667793364708 1.0 17.144622857007715 2.729910489997947 22.717016903071862 0.9930012843650439 1.0341286976768462 0.11204388591461001 0.05761731220647362 416.2353254561183 1093116.4853196675 0.017499263837144938 0.01678266480083303 536.9211231615228 -2.729910489997947 0.04112741331180236 WDEFEDILEER ddPTM_BT-474_Trastuzumab_2h_R1 1 WDEFEDILEER 11 0 Q5TBH8;O15228;A0A2R8YH69 Q5TBH8 GNPAT Dihydroxyacetone phosphate acyltransferase 0 83.869 0.038122 12754000.0 23477.0 27759.0 25683.0 26657.0 27560.0 30907.0 25284.0 27880.0 33731.0 28473.0 False True 23350.602440539922 28682.941534330163 29298.943159362138 30031.7734667962 31069.60263908194 28770.471837252215 24060.9163257403 29960.5471717714 25418.447022243134 26655.828763038266 0.8760036181249234 1.076047636309202 1.099157089423867 1.1266493994153772 1.1655838171561164 1.0793313572431924 0.9026512189748104 1.1239773273647207 0.9535793183624093 1.0 14.702163417526824 -0.6011632818187598 7.661113761023426 0.9999999218467518 1.053323105376269 0.012533129311868674 0.09505675168830063 0.0 0.0 0.08958427300303176 0.021115215642703578 0.25051672075315995 0.6011632818187598 0.05332318352951726 WDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_BT-474_Trastuzumab_2h_R1 3 WDEQTSNTKGDDDEESDEEAVKK 23 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 WDEQTSNTKGDDDEES(1)DEEAVKK;WDEQTSNTKGDDDEES(1)DEEAVKK;WDEQTSNTKGDDDEES(1)DEEAVKK 314.57 1.4327e-73 1066280000.0 1253390.0 619190.0 540426.0 475025.0 408019.0 807680.0 765870.0 765540.0 1599910.0 754040.0 True False 1246641.8875047201 639799.3648417402 616513.2833330007 535163.1162945899 459977.80113191553 751846.982674213 728821.9421924826 822668.4821333542 1205633.618195636 705916.5216338779 1.7659905233827184 0.9063385616204218 0.8733515429077237 0.7581110512273166 0.6516036769719948 1.0650650036268126 1.0324477751357752 1.1653906048681908 1.7078982871871857 1.0 19.429138061693163 1.5538327500073197 3.7055894768688122 1.3753711077773656 0.9786081640639912 0.14423898599353113 0.3256758465022806 0.3013561507151787 9.30964430104797 0.2045334032966013 0.08399272783386154 35.795855808711266 -1.5538327500073197 -0.3967629437133744 WDET(ph)PGR ddPTM_BT-474_Trastuzumab_2h_R1 4 WDETPGR 7 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR 133.13 0.036902 1253790000.0 4457000.0 3233810.0 2889450.0 3169650.0 3293730.0 3892540.0 3031520.0 3181500.0 5166800.0 3495690.0 True False 4433004.007219251 3341445.4109705784 3296259.4444503738 3570927.365008462 3713166.9920327775 3623457.8718535546 2884873.796068985 3418919.6853296547 3893511.3715729094 3272592.071389218 1.3545849621695862 1.0210393895968013 1.0072319960889928 1.0911617724150389 1.1346256762323987 1.10721342373582 0.8815256326292918 1.0447130625352645 1.1897331798888429 1.0 21.642002350973094 2.4140885989901557 24.999996349536545 1.0243248853565947 1.109364797059903 0.12858322119426002 0.1131785265846521 146.07741538428579 57935.589074809344 0.03913015527495615 0.03273863931014466 259.4708646112881 -2.4140885989901557 0.08503991170330827 WDET(ph)PKTER ddPTM_BT-474_Trastuzumab_2h_R1 2 WDETPKTER 9 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 WDET(0.999)PKT(0.001)ER;WDET(1)PKTER 149.41 0.00014177 818950000.0 2154770.0 1548580.0 1353620.0 1370550.0 1621650.0 2043130.0 2032940.0 2083590.0 3458500.0 2006100.0 True False 2143168.9577374533 1600123.549163621 1544197.9301240428 1544061.4894743408 1828157.5152274035 1901893.2321106913 1934598.9256150352 2239078.0660556406 2606199.016525688 1878068.9804913802 1.141155612493377 0.8520046738352298 0.8222264177538448 0.8221537683191757 0.9734240510958666 1.0126855040292917 1.030100036639157 1.192223549461855 1.3877014335457472 1.0 20.84081862272331 2.078231349320121 1.4891597065942541 1.2160731354421848 0.9109245624346849 0.45058376813433376 0.12592892892561686 0.3323378923008273 1.3913954159660449 0.07939356316770452 0.040622970795868525 119.73782066085512 -2.078231349320121 -0.30514857300749987 WDETKGEDNIDFMPTILSR ddPTM_BT-474_Trastuzumab_2h_R1 1 WDETKGEDNIDFMPTILSR 19 1 P33992;B1AHB1 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 103.31 0.00034218 101520000.0 90556.0 91811.0 85684.0 96162.0 101120.0 105370.0 88476.0 117770.0 134310.0 113030.0 False True 90068.45655771733 94866.87363407845 97747.56242132104 108336.09934028807 113997.0326148029 98086.01991429979 84196.07786885784 126558.59542394274 101211.100161794 105816.32863014843 0.8511772967717165 0.8965239567671947 0.9237474375336766 1.0238126831913323 1.0773104122072488 0.9269459750123462 0.7956813372645145 1.1960214180771016 0.9564790375174448 1.0 16.69120274287245 4.002821952203359 2.5428260715130007 1.0041943282291252 0.8712535607014411 0.2053606014805519 0.09773365695450908 0.4447486787445386 5.726337935461164 0.027131210153467037 0.06718089218522877 10065.189414804783 -4.002821952203359 -0.13294076752768413 WDETPASQMGGST(ph)PVLTPGK ddPTM_BT-474_Trastuzumab_2h_R1 1 WDETPASQMGGSTPVLTPGK 20 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 WDETPASQMGGS(0.052)T(0.948)PVLTPGK 176.42 5.4181e-12 126480000.0 212080.0 206990.0 184960.0 186910.0 195440.0 240000.0 221650.0 207860.0 272220.0 214280.0 True False 210938.1848443031 213879.53702190262 211000.76029885982 210572.7868356862 220328.12553636366 223409.36489923092 210927.94271477405 223371.5686916932 205135.02856111678 200604.4669456625 1.0515129002657735 1.0661753463338177 1.0518248347680779 1.0496914153597776 1.098321133576969 1.1136809080116123 1.0514618439274728 1.11349249641683 1.0225845500074604 1.0 17.613994205853526 3.276875454493437 24.998890758870566 1.076055849746536 1.055400964658985 0.0 0.03569036582377339 455.86492209939354 297430.2354634743 0.009312828737824616 0.012609307724221487 1891.8010165317733 -3.276875454493437 -0.020654885087550978 WDETPGR ddPTM_BT-474_Trastuzumab_2h_R1 2 WDETPGR 7 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 ; 134.12 0.007456 1333430000.0 1123010.0 1392600.0 1277730.0 1274100.0 1299740.0 1380780.0 1353680.0 1244140.0 1597460.0 1393780.0 False True 1116963.8389381398 1438951.849155523 1457623.2777717463 1435400.9293635846 1465254.1848374587 1285329.9286065006 1288197.326840221 1336984.0444149117 1203787.3878673192 1304827.7671249087 0.856023965062674 1.1027906405809764 1.1171001372721483 1.1000692700818164 1.1229483474788688 0.9850571554272101 0.98725468548134 1.0246440780156425 0.9225642021090458 1.0 20.31542795779498 2.7105685058178692 24.28919812660687 0.9889473492618585 1.0675976196461183 0.19298113536806394 0.07641446920446013 839.6264750074171 728556.227799703 0.024627529297146365 0.023224296936104498 513.5331760815496 -2.7105685058178692 0.07865027038425987 WDFDTQEEYSEYMNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 WDFDTQEEYSEYMNNK 16 0 Q13123 Q13123 IK Protein Red 0 232.6 6.0996e-16 136020000.0 107340.0 115790.0 116880.0 101840.0 111300.0 132480.0 98610.0 119510.0 167690.0 124270.0 False True 106762.09336659507 119644.00015346675 133335.6880608281 114732.9335581096 125473.39527321554 123321.9694243754 93839.85757321845 128428.44305948341 126365.04643087834 116338.98220710034 0.9176811705000392 1.0284085169361632 1.1460963946157887 0.9861950945545342 1.0785154974955395 1.0600227635208663 0.8066071732187741 1.1039158210174305 1.0861797484692632 1.0 16.827975062336662 WDGS(ph)EEDEDNSK ddPTM_BT-474_Trastuzumab_2h_R1 6 WDGSEEDEDNSK 12 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK 393.17 5.445999999999998e-103 12289850000.0 12028290.0 8913650.0 7505080.0 7359620.0 8224860.0 11616660.0 10717610.0 10774010.0 16702300.0 11071530.0 True False 11963531.023108656 9210335.451834785 8561730.028675219 8291347.137401162 9272247.16843539 10813627.636876266 10199158.259053847 11578021.33551423 12586241.964353614 10364935.47658627 1.1542311141380004 0.8886051893560116 0.8260282997434594 0.799941992512234 0.8945783781655763 1.0432894311116132 0.9840059575955005 1.1170374732836732 1.214309726556922 1.0 23.305207799674903 2.2375905204573003 1.4388883355381779 1.1157170865007817 0.9041136762179631 0.35687284426762855 0.1072181335903692 0.42703069883457306 1.732364625187132 0.06415471523552303 0.03781633722840234 172.81861506348739 -2.2375905204573003 -0.2116034102828186 WDGS(ph)EEDEDNSKK ddPTM_BT-474_Trastuzumab_2h_R1 3 WDGSEEDEDNSKK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK;WDGS(0.999)EEDEDNS(0.001)KK 167.03 3.9374e-06 2234730000.0 996850.0 626185.0 518883.0 507100.0 553524.0 872800.0 727758.0 749688.0 1448040.0 796282.0 True False 991483.0703604474 647027.1891881735 591937.2161881131 571298.8080058658 624012.0004062119 812465.3903502045 692553.5652344613 805633.5253985281 1091189.944741897 745462.6010286809 1.3300238925363623 0.867953923235486 0.7940535385293446 0.7663681681918281 0.8370802231327548 1.0898808192779423 0.9290252311501487 1.0807162214265558 1.4637755713514522 1.0 19.50777645046817 1.5267345549450986 4.1193565309737625 1.244569800059176 0.9324610041969323 0.2665484540207216 0.18803925708792274 0.2092115574990444 7.783649027511857 0.11644839428283318 0.04801020317225992 33.63059530413458 -1.5267345549450986 -0.3121087958622437 WDHESVCK ddPTM_BT-474_Trastuzumab_2h_R1 4 WDHESVCK 8 0 O95232;J3KPP4;C9JL41;O95232-2;H7C5U7 O95232 LUC7L3 Luc7-like protein 3 0 ;;; 153.78 0.00043559 2425340000.0 4408030.0 6216200.0 6038440.0 6255000.0 6026000.0 6945700.0 6835500.0 5858400.0 7988900.0 7080900.0 False True 4384297.656258178 6423102.459227748 6888599.864938621 7046882.358660393 6793375.381099707 6465560.107419123 6504840.750854207 6295583.556352434 6020142.64077549 6628990.899736515 0.6613823615948006 0.9689412093600928 1.0391626673092016 1.0630399807820656 1.0247978137018903 0.975346052696514 0.9812716368509056 0.9497046611728893 0.9081537042108135 1.0 22.660357841660996 4.735841102862212 4.7267563520336875 0.9918563943635698 0.6428465288414921 0.8470117145675984 0.04200632079539937 0.07082538771628671 4.4380757366768515 0.011325398029456698 0.081489604283168 54430.34698205587 -4.735841102862212 -0.3490098655220777 WDHSLAWDVPAAEDFPNGSGS(ph)PSAAIYNIDTSSESPDHYLVDHTLDGR ddPTM_BT-474_Trastuzumab_2h_R1 3 WDHSLAWDVPAAEDFPNGSGSPSAAIYNIDTSSESPDHYLVDHTLDGR 48 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 WDHSLAWDVPAAEDFPNGS(0.009)GS(0.986)PS(0.005)AAIYNIDTSSESPDHYLVDHTLDGR;WDHSLAWDVPAAEDFPNGS(0.008)GS(0.857)PS(0.135)AAIYNIDTSSESPDHYLVDHTLDGR;WDHSLAWDVPAAEDFPNGS(0.04)GS(0.494)PS(0.457)AAIY(0.002)NIDT(0.006)S(0.002)SESPDHYLVDHTLDGR 231.27 4.3631999999999985e-51 1624050000.0 59890.0 73416.0 64657.0 76472.0 77712.0 73633.0 72080.0 38418.4 78529.0 61631.0 True False 59567.55889440457 75859.60717909074 73760.14359128133 86153.34735914916 87608.16256488879 68542.92402343784 68593.21502766028 41285.37609268231 59176.58018468856 57697.65681504625 1.0324086311746146 1.3147779540209728 1.2783906255972313 1.493186242126254 1.5184007011883116 1.1879672036449735 1.1888388335689346 0.7155468414432389 1.0256322951620567 1.0 15.816225109686147 1.9764344046276219 3.4933553126046255 0.8894682656407198 1.3186592955526022 0.5563275263089498 0.15393916893682638 0.16297199223687106 3.980519997696346 0.0744209886194601 0.044127278105064324 94.71841120281847 -1.9764344046276219 0.4291910299118824 WDHSLAWDVPAAEDFPNGSGSPSAAIYNIDTSSESPDHYLVDHTLDGR ddPTM_BT-474_Trastuzumab_2h_R1 7 WDHSLAWDVPAAEDFPNGSGSPSAAIYNIDTSSESPDHYLVDHTLDGR 48 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;;;; 367.59 3.3361999999999964e-182 15284697000.0 663367.1 943018.8 876500.1 994265.5 967587.3 926044.3 996160.0 431360.0 944485.9 878785.0 False True 659795.605240614 974406.610691097 999903.6954045568 1120139.4103556618 1090803.8073157535 862029.0372148036 947971.9350992517 463550.27360169764 711730.0054076565 822700.1889343098 0.8019879101951888 1.184400616162859 1.2153925680991866 1.361540237162996 1.3258825292464484 1.0478045937140708 1.1522690134874207 0.5634498202828427 0.8651146735843112 1.0 19.650007249262114 1.760698606270225 24.99999999999974 0.7706983811590542 1.1693407283757666 0.43566965176857 0.17839556082079017 9.002030269055783 10173.940269812176 0.08235252636225156 0.04566990513529876 57.63663351433207 -1.760698606270225 0.39864234721671243 WDKDDFES(ph)EEEDVK ddPTM_BT-474_Trastuzumab_2h_R1 6 WDKDDFESEEEDVK 14 1 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;Q7Z6E9-4 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK 278.02 2.2305e-33 5495890000.0 7376890.0 4286160.0 3350180.0 3255140.0 3482030.0 5599240.0 5516040.0 5609980.0 9295080.0 4927330.0 True False 7337173.643889533 4428822.244561571 3821856.223713421 3667240.39024298 3925445.8808912407 5212177.717993208 5249208.071880892 6028625.19450122 7004432.0816907855 4612863.5809005555 1.5905897747050042 0.9601025841949883 0.8285214068626957 0.7950030010484367 0.8509780989718512 1.1299223631008941 1.1379499913275355 1.3069159945380977 1.518456368554331 1.0 22.137231196635952 2.14471408252847 1.9764662306136438 1.2998102281035717 0.9862078604854675 0.16804895156311572 0.24437800746733274 0.5065963779388533 3.880629532034971 0.12944234613256633 0.07686562531771772 139.54493654552934 -2.14471408252847 -0.3136023676181042 WDKDDFES(ph)EEEDVKSTQPISSVGKPASVIK ddPTM_BT-474_Trastuzumab_2h_R1 1 WDKDDFESEEEDVKSTQPISSVGKPASVIK 30 3 Q7Z6E9;A0A2R8Y880;Q7Z6E9-2;Q7Z6E9-4 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 WDKDDFES(1)EEEDVKSTQPISSVGKPASVIK 167.35 1.8083e-12 349390000.0 368030.0 249570.0 181910.0 215910.0 200760.0 366530.0 390220.0 305830.0 756840.0 371990.0 True False 366048.56737197656 257876.78658174895 207521.34680993523 243244.18386224884 226325.59600225327 341192.64381881274 371343.56781483884 328652.58757327334 570326.9231364175 348249.2797233385 1.0511107665830017 0.7404948167778419 0.5958988543344512 0.6984772059126457 0.6498953743193792 0.9797368255574519 1.0663153937026009 0.9437279750710943 1.6376973517059543 1.0 18.409760843370613 2.0772730882888135 1.1827816313963537 1.2310574855287164 0.7410183129947682 0.46909149642825887 0.20875647831005265 0.42382916524768266 1.1063177470716843 0.1487898250229015 0.07343523974442395 119.47391310589907 -2.0772730882888135 -0.49003917253394824 WDKDNLQILR ddPTM_BT-474_Trastuzumab_2h_R1 2 WDKDNLQILR 10 1 A0A0B4J1W3;Q9BXJ9;Q9BXJ9-4 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 ; 119.76 0.00059202 1528320000.0 2025830.0 2098600.0 2040800.0 1863200.0 1644040.0 2218930.0 2203120.0 2104280.0 2845930.0 2363740.0 False True 2014923.1563708733 2168450.632369508 2328126.9010484065 2099080.9289618013 1853398.7490114772 2065540.5918993782 2096546.6688643014 2261312.05891733 2144588.6850082255 2212884.0895003704 0.9105416618661698 0.9799205673077551 1.0520781057149975 0.9485724710668132 0.8375489515268473 0.9334156279128656 0.9474272415857371 1.0218845486063817 0.9691373783126775 1.0 21.077496454316467 1.7573703353768075 24.999999999997616 0.9979615786436195 0.9453864940996665 0.17793092823382906 0.05194585171258329 15.270321922458166 20315.649676787263 0.02626615092132949 0.014566205597239224 57.196616075045604 -1.7573703353768075 -0.05257508454395299 WDLLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 WDLLSR 6 0 F8VNY0 F8VNY0 AVIL 0 ; 175.93 0.0094204 669890000.0 1146060.0 1247160.0 1148870.0 1205700.0 1113440.0 1286890.0 1185010.0 1147650.0 1343500.0 1180570.0 False True 1139889.740299236 1288670.966675861 1310620.9098429445 1358341.4963767927 1255229.9841240728 1197930.3233132148 1127686.5391221922 1233293.470648617 1012412.4269776659 1105225.0118631718 1.0313644082100775 1.1659806399996673 1.1858407978240733 1.2290180567728202 1.1357234686609425 1.0838791290958587 1.0203230355972084 1.1158754619292857 0.9160238106364931 1.0 20.075908685956247 2.5662158624754867 2.1513853044498465 1.0309250291074317 1.1583578546994524 0.4762996963011398 0.06621391481802903 0.31002218566179357 2.8588738911567444 0.025941807066747775 0.022849173983276412 368.31199458086 -2.5662158624754867 0.12743282559202074 WDLPDSDWDNDSSSAR ddPTM_BT-474_Trastuzumab_2h_R1 2 WDLPDSDWDNDSSSAR 16 0 O15020;O15020-2;A4QPE4;E9PJZ2 O15020 SPTBN2 Spectrin beta chain, non-erythrocytic 2 0 ; 235.73 2.4146e-19 205900000.0 177682.0 194797.0 186529.0 188043.0 183764.0 230840.0 201653.0 185477.0 238650.0 209703.0 False True 176725.37985432596 201280.70038772665 212790.6618608676 211849.2245195166 207165.25614543725 214882.5741389105 191898.2740007323 199318.23557312213 179837.90524616325 196319.57500422891 0.9001923514276104 1.0252706607753754 1.083899360806399 1.079103927944797 1.055245031683543 1.0945550087620235 0.9774790618643027 1.0152743839672056 0.916046732692292 1.0 17.582844505384237 2.204457020980334 24.97989275262478 0.9823803739584195 1.0435599286636863 0.22117393040616196 0.05686219535703383 300.78686590500143 220316.02402036832 0.021855549329494833 0.01614221818088894 160.12421770137277 -2.204457020980334 0.061179554705266814 WDLSAQQIEER ddPTM_BT-474_Trastuzumab_2h_R1 1 WDLSAQQIEER 11 0 P52888;K7EKB6 P52888 THOP1 Thimet oligopeptidase 0 129.39 0.00057237 71694000.0 30917.0 39052.0 36414.0 32207.0 28656.0 31006.0 30676.0 27019.0 41439.0 35316.0 False True 30750.546307201603 40351.82221256751 41540.77468383808 36284.40289774187 32305.171742581013 28862.62820027315 29192.084686300048 29035.294979701997 31226.913704151466 33062.10264445123 0.9300844122919818 1.2204856613782156 1.2564468488458282 1.0974620485558089 0.9771057845288841 0.872982233182835 0.8829470103650324 0.8782047316211739 0.9444926730754143 1.0 15.012890857908074 3.1846140664644054 2.7993044739518695 0.904420075079493 1.147748060247462 0.55624751095259 0.08854441547449604 0.17413152517822417 2.7827376116654947 0.02658490339992552 0.034208100092180435 1529.7274731246375 -3.1846140664644054 0.24332798516796894 WDQTADQTPGAT(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK 318.83 5.5556e-55 4720790000.0 5418580.0 3842140.0 3170680.0 3132560.0 3055490.0 4451690.0 4054630.0 4125740.0 6124310.0 3791170.0 True False 5389406.967340839 3970023.307277324 3617084.1839553914 3529141.774811389 3444588.5401918883 4143955.14845107 3858492.056709246 4433623.668883218 4615055.862049565 3549214.2848160695 1.5184788899327146 1.1185639943639138 1.0191225137996534 0.994344520112366 0.9705214348224108 1.167569725552883 1.0871397856185525 1.2491845555369114 1.3003035296553616 1.0 21.759068249473625 1.7453301893985278 24.99785106343637 1.2065875030106932 1.1114362951668717 0.015333212433120358 0.1627392634979082 4.367165008414121 16176.465456981421 0.07572256420952299 0.04199170158399302 55.63270659742423 -1.7453301893985278 -0.09515120784382147 WDS(ph)DNDEENEDVPISMK ddPTM_BT-474_Trastuzumab_2h_R1 2 WDSDNDEENEDVPISMK 17 0 Q9Y485;F5H269 Q9Y485 DMXL1 DmX-like protein 1 1 WDS(1)DNDEENEDVPISMK;WDS(1)DNDEENEDVPISMK 177.0 1.1041e-09 254740000.0 330340.0 227516.0 210229.0 177853.0 223975.0 320650.0 268030.0 258770.0 362040.0 289190.0 True False 328561.4861442241 235088.73252367377 239827.41585677472 200369.17156432098 252496.88864616756 298484.2202289098 255064.36492596797 278080.73140743526 272820.0930874538 270733.64661198476 1.213596796171841 0.8683395487248127 0.8858426680910304 0.7400970439831954 0.9326394846224854 1.102501384531259 0.942122887634746 1.027137686384361 1.0077066389847706 1.0 18.04651467038923 2.978075534151479 24.5169715931738 1.0127287736589272 0.9094091950935441 0.11627889357954269 0.11699485941561706 1160.2189281154854 1297412.9039431405 0.03544754698785499 0.037921558638002756 950.7701408434361 -2.978075534151479 -0.1033195785653831 WDS(ph)YENLSADGEVLHTQGPVDGSLYAK ddPTM_BT-474_Trastuzumab_2h_R1 5 WDSYENLSADGEVLHTQGPVDGSLYAK 27 0 Q68CZ2;E9PCX8;C9JHU5;Q68CZ2-3 Q68CZ2 TNS3 Tensin-3 1 WDS(0.994)Y(0.003)ENLS(0.003)ADGEVLHTQGPVDGSLYAK;WDS(1)YENLSADGEVLHTQGPVDGSLYAK;WDS(1)YENLSADGEVLHTQGPVDGSLYAK;WDS(1)YENLSADGEVLHTQGPVDGSLYAK;WDS(0.999)YENLS(0.001)ADGEVLHTQGPVDGSLYAK 261.25 2.8858e-53 3235553000.0 1376960.0 1075349.0 1001279.0 875484.0 933497.0 1404603.0 1382037.0 1244910.0 1599007.0 1308723.0 True False 1369546.6003546393 1111141.3414028033 1142250.3799269157 986320.1846346026 1052372.3096797927 1307506.1006898123 1315182.5904159625 1337811.5057248892 1204953.1504460578 1225199.1776858687 1.1178154746572808 0.9069066986328741 0.9322977036961247 0.8050284415775925 0.8589397779938868 1.0671784020941013 1.0734439055860718 1.0919134864681517 0.9834753176393317 1.0 20.224584873083675 2.7262534985144073 24.39959599752956 1.0548879499444088 0.917066507538293 0.3412235159978362 0.08157532108671657 573.1744794958335 1136350.2380534438 0.026926593764175104 0.025561464524237153 532.4189425333166 -2.7262534985144073 -0.13782144240611582 WDSNVIETFDIAR ddPTM_BT-474_Trastuzumab_2h_R1 2 WDSNVIETFDIAR 13 0 Q9Y365;F5H8H3;F5H0V7;F5H8G1;F5GY11;F5H1Z6;H0YGA9;H0YFF3;F5GWK5;H0YH17 Q9Y365 STARD10 PCTP-like protein 0 ; 205.49 1.6164e-07 765890000.0 662820.0 785840.0 727170.0 679450.0 680940.0 736270.0 716160.0 655100.0 832140.0 775470.0 False True 659251.4507662256 811996.2093496886 829549.2153250533 765468.3003344218 767653.672752411 685373.3878931537 681516.6048031241 703986.8885303957 627070.2471047236 725978.8406867319 0.9080863157700488 1.1184846772966408 1.1426630761584595 1.0543947804461289 1.0574050230255434 0.9440679941096246 0.938755465873428 0.969707171994802 0.863758297020824 1.0 19.46956797461214 2.75032422333428 5.143669591039453 0.9429161697530186 1.0651314039983544 0.41803326020762854 0.06626488512547636 0.17060494672421656 14.457177499395534 0.020701830412883995 0.021003931595261028 562.761298874611 -2.75032422333428 0.12221523424533576 WDTAFDHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 WDTAFDHEK 9 0 P52701;P52701-3;P52701-2;A0A087WWJ1;A0A494C0M1;P52701-4 P52701 MSH6 DNA mismatch repair protein Msh6 0 109.29 0.0024731 244490000.0 210070.0 229220.0 199800.0 164270.0 175770.0 247640.0 253340.0 166320.0 367090.0 253280.0 False True 208939.0064609713 236849.44913358375 227930.10330726762 185066.56515701758 198153.26762958738 230521.2296818564 241084.9763472177 178731.64295584743 276625.5882539869 237115.4535560825 0.8811699251459926 0.9988781649677007 0.961262118891621 0.7804913698433649 0.8356826375414633 0.9721898181863274 1.0167408860603693 0.7537747551893486 1.1666282568485544 1.0 17.855230165271067 2.7083833527484273 24.511359829711854 0.9520860764727029 0.8951713218302986 0.11354746385666903 0.11146542891256665 1864.561302717898 1514479.9708940764 0.0371394955215629 0.035020057068230234 510.9558228671756 -2.7083833527484273 -0.056914754642404364 WDVDDWDNENSSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 WDVDDWDNENSSAR 14 0 Q01082;A0A087WUZ3;Q01082-2;F8W6C1 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 0 121.08 0.0015653 0.0 172960.0 195490.0 173730.0 181320.0 183850.0 177250.0 191010.0 172310.0 206290.0 177880.0 False True 172028.8025776626 201996.76647379957 198189.67391176987 204275.09340884158 207262.20773567574 164997.12470161938 181770.11657094065 185168.64717245096 155452.59364437865 166527.54610927013 1.0330351139911875 1.212993112510381 1.1901314739948432 1.2266744942893875 1.244612153233056 0.9908098002798496 1.091531826522375 1.1119400453481079 0.9334947717441027 1.0 17.345401314485393 2.7374031003711554 24.99970601826032 1.044470953713371 1.1862298965624396 0.5254437690945937 0.07292742845834345 93.10316517069354 2010795.2300051798 0.02323672496252509 0.023031568770089605 546.2646539102535 -2.7374031003711554 0.14175894284906865 WDYLTQVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 WDYLTQVEK 9 0 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 ; 178.22 0.00011914 930960000.0 1050160.0 1123280.0 1040060.0 863200.0 902140.0 1116130.0 1157250.0 1062380.0 1456290.0 1115920.0 False True 1044506.0552437436 1160667.6957629016 1186491.40763642 972481.03149411 1017022.1815972927 1038974.5601874125 1101269.3963756908 1141660.1902563323 1097406.8427862348 1044701.0302128231 0.9998133676875577 1.1110046436217778 1.1357234015503095 0.930870175648242 0.973505483564143 0.994518556161236 1.0541478992811406 1.0928104378568066 1.0504506179750532 1.0 19.9946587040315 -0.8748138667134886 7.728693889603604 1.000000242148617 1.0413167808836712 0.03142059082291515 0.061137632701024805 0.0 0.0 0.06303011705066436 0.014856341061835537 0.13340930855810196 0.8748138667134886 0.04131653873505425 WEAERDDWLHNR ddPTM_BT-474_Trastuzumab_2h_R1 3 WEAERDDWLHNR 12 1 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 ;; 146.79 3.7797e-05 269182000.0 245988.0 329380.0 299042.0 359940.0 352223.0 317018.0 311258.0 274263.0 391145.0 336582.0 False True 244663.62793983627 340343.2141855856 341144.5142803399 405508.3670945206 397076.51126071735 295103.29184010177 296201.26141897147 294729.8977392952 294752.55582447257 315101.0485976525 0.7764608497137797 1.0801081611764625 1.082651155236052 1.286915320971552 1.2601561087400188 0.9365354166653835 0.9400199165861428 0.9353504187021322 0.9354223260641616 1.0 18.265455029820878 2.6862838465529912 24.926000323941714 0.9439104645388016 1.1060306207209119 0.2416567694470555 0.13025730308206634 467.9453827845029 223119.67311234798 0.04437797509491366 0.04183999044751946 485.6057791009069 -2.6862838465529912 0.1621201561821103 WEDDKDAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 WEDDKDAAK 9 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 84.17 0.014294 72429000.0 306020.0 269010.0 248090.0 210290.0 201810.0 322390.0 324030.0 275630.0 527250.0 318880.0 False True 304372.42232201836 277963.8352300211 283018.91556306306 236912.6924384805 227509.30727841513 300103.9381244298 308355.43098519393 296198.91022078064 397316.30228803435 298528.80539309693 1.0195747171574505 0.9311122752928439 0.9480455837097169 0.793600778747359 0.762101690585052 1.0052763174034705 1.032916842242937 0.9921954091858964 1.3309144548542173 1.0 18.187510619972944 1.902649736368178 1.3977465095910409 1.1340077814600489 0.8979960261489293 0.4058787308730355 0.1128377203666146 0.42118725087449227 1.531834629226317 0.08374955749049198 0.036663267500551 79.91894392892233 -1.902649736368178 -0.23601175531111962 WENFIHSENR ddPTM_BT-474_Trastuzumab_2h_R1 2 WENFIHSENR 10 0 P19784;H3BSA1;H3BV19 P19784 CSNK2A2 Casein kinase II subunit alpha 0 ; 113.67 0.0014573 416020000.0 438430.0 438850.0 402760.0 401660.0 396130.0 460290.0 457890.0 408830.0 602980.0 465150.0 False True 436069.541594152 453456.85695957294 459465.10714732326 452510.1148168719 446574.8074535391 428471.2357061128 435740.11139033566 439338.97059667576 454383.658518045 435463.72876504995 1.0013911901016879 1.0413194647589834 1.0551168255742902 1.0391453637256185 1.0255155089954324 0.9839424213842851 1.0006346857545851 1.0088991150712272 1.0434477741846626 1.0 18.732193031355028 2.9855234964568047 17.497605598753978 1.0071713854308382 1.0357511960356585 0.3143882479168584 0.018843744380142354 15.287847878350288 18479.526834630124 0.005770458496371812 0.006370031014268975 967.2160541292358 -2.9855234964568047 0.028579810604820288 WENPGLGAESHTDSLR ddPTM_BT-474_Trastuzumab_2h_R1 2 WENPGLGAESHTDSLR 16 0 Q9UHB6;Q9UHB6-4;F8VRN8;F8VTU2;F8VVQ7 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 ; 243.29 5.434599999999999e-20 1001080000.0 353520.0 490720.0 415210.0 426190.0 406380.0 443750.0 510930.0 397440.0 418100.0 451050.0 False True 351616.6875997645 507053.31855349615 473667.95892998285 480145.610301755 458130.08419702883 413074.60697514063 486214.36395785894 427098.99095942726 315064.8572529674 422263.6028366672 0.8326947556874109 1.2007980681906554 1.1217352282981372 1.1370755307259497 1.0849386049837568 0.9782387215005104 1.1514474861001176 1.0114511127416075 0.7461331148042031 1.0 18.687784373316408 1.4365712332051848 6.50765218004573 0.8719601216940056 1.078089874382161 0.32464619561303953 0.11331515382547466 0.18763593125240777 16.527713429032232 0.06693530025808829 0.026445953197765562 27.325696046013086 -1.4365712332051848 0.20612975268815537 WES(ph)QQDVSQTTVSR ddPTM_BT-474_Trastuzumab_2h_R1 2 WESQQDVSQTTVSR 14 0 Q9NQT8;H0YBA8 Q9NQT8 KIF13B Kinesin-like protein KIF13B 1 WES(0.808)QQDVS(0.192)QTTVSR;WES(1)QQDVSQTTVSR 293.77 1.4081e-24 0.0 470990.0 253010.0 236860.0 257120.0 236200.0 319070.0 265530.0 270490.0 472300.0 330410.0 True False 468454.2421719079 261431.2849022254 270207.8291759728 289671.36563689244 266278.6699329154 297013.4419099899 252685.29947689557 290675.3373203891 355907.9934957585 309322.95092176733 1.514450320533724 0.8451726072157688 0.8735460086966279 0.9364690359175931 0.8608435589387012 0.9602049929528486 0.8168979984314312 0.9397147429707067 1.1506032527983132 1.0 18.23875435588406 4.743108759141779 24.993531813043514 0.9222368792170497 1.514450558707438 0.785473902866489 0.0912814626330643 197.71308960640462 1086460.235907655 0.021076853467507067 0.1694657812229237 55348.870047514334 -4.743108759141779 0.5922136794903883 WESENK ddPTM_BT-474_Trastuzumab_2h_R1 4 WESENK 6 0 P29373 P29373 CRABP2 Cellular retinoic acid-binding protein 2 0 ;;; 124.89 0.042251 2928890000.0 3500640.0 3087250.0 3005630.0 2652850.0 2600780.0 3367740.0 3997320.0 3093470.0 4788360.0 3548360.0 False True 3481792.943197668 3190007.249967963 3428796.578595714 2988700.5379971596 2931973.916969217 3134936.0606072308 3803954.360354705 3324320.439722372 3608332.8387367143 3321900.6268961625 1.0481327812779584 0.9602958090135782 1.0321791539560383 0.899695949300467 0.8826193936176604 0.9437175920389819 1.1451138331940267 1.0007284422678444 1.0862254004594296 1.0 21.663577485722467 2.27497935093447 24.999961053283517 1.0550416346581493 0.9579414163322632 0.37141660166859614 0.06163155461552271 184.9605136343677 126967.10977528986 0.02158211723654831 0.018056450179246133 188.35595312051566 -2.27497935093447 -0.09710021832588611 WESGSLLER ddPTM_BT-474_Trastuzumab_2h_R1 3 WESGSLLER 9 0 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 ;; 114.5 0.0037886 614700000.0 513840.0 628420.0 610890.0 635170.0 625520.0 604540.0 656410.0 578330.0 722210.0 629720.0 False True 511073.54253299074 649336.5798120884 696898.0020489333 715582.4568745529 705176.2642524864 562749.5727340878 624656.94057029 621487.9213002358 544231.022618191 589530.7304695841 0.8669158639548795 1.1014465340846042 1.1821232821804335 1.2138170580260739 1.1961654037793519 0.9545720751246266 1.0595833402488222 1.054207845628669 0.9231597175344699 1.0 19.169207492969306 2.732619708128362 24.98659227682598 1.0110813099105123 1.1210439612974143 0.24082910906517108 0.09909821396354565 776.0465344479462 3263929.6255579097 0.03314516618545583 0.03201906718572073 540.2810163030473 -2.732619708128362 0.10996265138690209 WESPAQNTAHLDQFER ddPTM_BT-474_Trastuzumab_2h_R1 2 WESPAQNTAHLDQFER 16 0 P17612-2;P17612;Q15136 P17612-2 PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit alpha 0 ; 200.69 3.489500000000001e-11 1168080000.0 415570.0 464740.0 425360.0 412870.0 424930.0 479690.0 390030.0 376530.0 401320.0 406810.0 False True 413332.6172941672 480208.5899587373 485246.99070460093 465139.29966748477 479042.31674256513 446530.1593688006 371162.7588407096 404628.58058059856 302420.06341248716 380847.03751243686 1.0852982341517348 1.2608962198978788 1.274125680152507 1.221328391329013 1.2578339058943622 1.172465886266002 0.9745717368973599 1.0624438179262063 0.7940722485011096 1.0 18.538852147922725 2.1940485841838333 1.6145442749141694 0.9468456764739865 1.2285731544951468 0.6986193337732045 0.08160822962726803 0.21203335098748222 1.0821661294528258 0.04487486912037599 0.026191951552219792 156.33225205260385 -2.1940485841838333 0.28172747802116027 WEVEEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 WEVEEMK 7 0 P27824;P27824-2;H0Y9Q7;D6RDP7;D6RAU8;D6RB85 P27824 CANX Calnexin 0 ; 141.78 0.0058941 238110000.0 362900.0 357050.0 352860.0 247125.0 351110.0 503760.0 365600.0 316470.0 495670.0 392600.0 False True 360946.1867219802 368934.1934087174 402539.62088589853 278410.9996617028 395821.7773079853 468936.2569234863 347914.53127237206 340086.59840209835 373518.77013771445 367543.9318782292 0.9820490978519681 1.003782572394499 1.095214982407229 0.7574903991448374 1.0769373208945396 1.2758645055765725 0.9465930494198431 0.9252950978245841 1.0162561199934728 1.0 18.487557177487417 WEWLVNQHR ddPTM_BT-474_Trastuzumab_2h_R1 2 WEWLVNQHR 9 0 Q9BWJ5 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 0 ; 154.56 7.5418e-05 2959100000.0 2012430.0 2330690.0 2145070.0 2123930.0 1811200.0 2025980.0 2220100.0 1830550.0 2690800.0 2133000.0 False True 2001595.3004819911 2408265.6077181455 2447077.2107173176 2392819.3202285483 2041845.5841765332 1885928.7712439315 2112705.2813944025 1967154.9363445542 2027688.3948727231 1996870.113846826 1.0023662964368085 1.2060201567536086 1.2254563748281055 1.1982849077844901 1.0225229823501465 0.9444423841923429 1.0580083635607267 0.9851191235242499 1.0154332927375673 1.0 20.929309065249182 3.1827479621498083 6.247090759705351 1.0020417787511267 1.1661422852442713 0.5852839352570407 0.06334826140749171 0.13210507577342173 10.688272397620706 0.018195745916797464 0.022046628190674177 1523.1685437562462 -3.1827479621498083 0.16410050649314467 WFCHIQHYPGIR ddPTM_BT-474_Trastuzumab_2h_R1 1 WFCHIQHYPGIR 12 0 O43324 O43324 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 0 139.86 3.4225e-05 158630000.0 155120.0 188370.0 213370.0 184060.0 124530.0 165820.0 184390.0 88087.0 259420.0 126880.0 False True 154284.8511554523 194639.7815779302 243410.6413547134 207361.97712790305 140388.15735286183 154357.25369829359 175470.35126179628 94660.49923672278 195489.417049904 118782.4097725669 1.2988863540558073 1.638624624223466 2.049214541284123 1.7457296709583496 1.1818934943453625 1.299495893321595 1.4772418879004896 0.7969235463228064 1.6457774970570835 1.0 16.857961680837864 3.2380393479337393 24.96841754527187 1.214166526284551 1.7060861137089893 0.38327774107171786 0.27810966093109324 13.448306190180945 644180.0371830091 0.07927769402439025 0.1003955994865228 1729.9730910774915 -3.2380393479337393 0.4919195874244384 WFDFPFTR ddPTM_BT-474_Trastuzumab_2h_R1 2 WFDFPFTR 8 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 0 ; 155.0 0.00096795 275970000.0 456940.0 564210.0 516680.0 524050.0 507950.0 517850.0 510620.0 461670.0 582090.0 523620.0 False True 454479.88581080706 582989.3887778529 589424.0529369322 590394.6762679425 572634.4216444733 482052.2483877785 485919.3598421743 496122.1597127583 438641.7191063863 490202.1233063646 0.9271275341391535 1.1892836874015302 1.2024102404153731 1.2043902875935932 1.1681598149394194 0.9833744601846766 0.9912632702704275 1.0120767253443614 0.8948180724877149 1.0 18.903017207676506 2.733668262252443 23.488462979934006 0.9812046643877937 1.1483443892445042 0.4962270128991997 0.0812063493846774 148.66420712361503 713741.1215461396 0.025869951999145494 0.025143913695679743 541.58703872219 -2.733668262252443 0.16713972485671047 WFGFLEAQQAFQSVGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 WFGFLEAQQAFQSVGTK 17 0 P07814;V9GYZ6;V9GZ76 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 121.42 0.0012204 0.0 15866.0 17182.0 18104.0 16083.0 14449.0 18831.0 16557.0 19842.0 19345.0 16183.0 False True 15780.57921887831 17753.892483261658 20652.88583721108 18119.106150972857 16288.994504067314 17529.257293405914 15756.0746561178 21322.710795634455 14577.683959719348 15150.187085036652 1.0416095280080255 1.1718596201888887 1.3632099538631615 1.1959658352251312 1.075167878300026 1.157032398016985 1.0399920850930986 1.4074222764347382 0.9622114814751861 1.0 13.887047988758441 3.4457697963374407 24.360142708277717 1.1430078117275249 1.2050894538244823 0.04755445843520012 0.13831006559095732 569.1477546355379 442226.59388017014 0.03901933282670424 0.05283297838161625 2791.064007851675 -3.4457697963374407 0.062081642096957435 WFHPNITGVEAENLLLTR ddPTM_BT-474_Trastuzumab_2h_R1 2 WFHPNITGVEAENLLLTR 18 0 Q06124;Q06124-1;Q06124-3;A0A1W2PPU4 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 ; 220.04 6.9986e-19 731190000.0 420620.0 560090.0 477690.0 509940.0 479900.0 495760.0 613640.0 480180.0 571420.0 553440.0 False True 418355.42865527555 578732.2570684446 544944.5998440881 574498.351714674 541012.4204098481 461489.2780935111 583955.8888675555 516013.46990463417 430601.19763571105 518118.98537617776 0.8074504900675096 1.1169871658886594 1.0517750077203476 1.1088154804780264 1.044185671013481 0.8907013468314601 1.1270690813299906 0.9959362317711348 0.8310855417179418 1.0 18.982923923506814 1.4608930502712432 24.995184743922763 0.9148653477087443 1.0277969232421433 0.1371210581083846 0.10335962439838758 8.485345178586977 13073.863847177829 0.05262602185623081 0.024360001871613038 28.899681087218735 -1.4608930502712432 0.11293157553339905 WFLTCINQPQFR ddPTM_BT-474_Trastuzumab_2h_R1 2 WFLTCINQPQFR 12 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 ; 211.27 7.8901e-08 1496890000.0 554850.0 620880.0 677420.0 675880.0 561970.0 571540.0 680350.0 611730.0 717250.0 653200.0 False True 551862.7492496305 641545.6154701145 772794.8477598061 761446.3387004616 633533.5484428476 532030.7850604434 647438.8713106078 657380.3989019996 540493.3481575964 611512.216767345 0.9024558040180436 1.0491133257509326 1.263743922966992 1.2451858161161813 1.0360112702112716 0.8700247852331282 1.0587505098968961 1.0750077935926268 0.8838635326287058 1.0 19.222021795582943 3.0121011569616316 24.834724324061558 0.9922310504497694 1.1234719598318852 0.24295168188195793 0.11264231375963092 333.56787572107214 684562.6909379155 0.034793633703948924 0.0415591316660406 1028.255774153509 -3.0121011569616316 0.13124090938211574 WFNGQPIHAELSPVTDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 WFNGQPIHAELSPVTDFR 18 0 P0DN76;Q01081;Q01081-2;Q01081-4 P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit 0 ;;; 256.67 1.3396999999999999e-30 5794490000.0 2627267.0 3509120.0 3402980.0 3449753.0 3110590.0 3134217.0 3465213.0 2737648.0 3855978.0 3229284.0 False True 2613122.0863888054 3625918.9378921664 3882090.0047675995 3886491.3760888595 3506705.198588602 2917555.9559432184 3297587.408790839 2941945.195254864 2905723.8893580125 3023188.330390872 0.8643596762134073 1.1993691896208685 1.2841045877766004 1.285560458480061 1.1599360725685308 0.9650592808308451 1.0907647980913215 0.9731266708331386 0.961145509906863 1.0 21.52763942419382 2.7786102908493686 7.385584070844219 1.0022152433265707 1.1754689754413379 0.3211795677886311 0.11543543476174083 0.301721597793997 48.14110508987678 0.03632335781139059 0.038249311299371605 600.6345231200404 -2.7786102908493686 0.17325373211476713 WFQLTPPR ddPTM_BT-474_Trastuzumab_2h_R1 1 WFQLTPPR 8 0 O15296-4;O15296;I3L1D5;O15296-3;O15296-2 O15296-4 ALOX15B Arachidonate 15-lipoxygenase B 0 94.262 0.022115 0.0 98562.0 139600.0 123720.0 128780.0 116880.0 131640.0 114540.0 89665.0 123120.0 119060.0 False True 98031.35314326764 144246.5016100179 141138.70060648228 145083.53479588914 131763.97519796444 122540.03664722819 108999.26261470868 96356.25760964431 92778.7257234761 111461.48886760557 0.8795087356110028 1.2941375812892155 1.2662552962496978 1.3016471991345815 1.1821479915316244 1.099393502564655 0.977909623512911 0.8644802665797573 0.8323836929334316 1.0 16.766185804161996 2.2724093807819687 1.9202029037898232 0.886241741364389 1.2011694280670655 0.52594145702896 0.12009129918739893 0.24238535471389427 1.810933392680469 0.057221175270579294 0.03822724527583555 187.24463404821793 -2.2724093807819687 0.31492768670267646 WFSNPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 6 WFSNPSR 7 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 WFSNPS(1)R;WFS(0.002)NPS(0.998)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R 100.57 0.010173 1659417000.0 1100155.0 1341210.0 1133943.0 1192358.0 1233667.0 1173933.0 1137002.0 986703.0 1228810.0 1191240.0 True False 1094231.8877187115 1385851.3640714355 1293592.317990757 1343310.4005447815 1390767.1799328127 1092781.7748510381 1082000.8694905627 1060335.7882363112 925986.2407104034 1115214.043328126 0.9811855349787405 1.2426774683859327 1.1599498102895995 1.204531460647634 1.2470854256662294 0.9798852349364761 0.9702181172876505 0.9507912804540715 0.8303215389460025 1.0 20.088889202888737 2.62343481067458 5.007516302730318 0.9413437949474942 1.1723720627105305 0.6523077827943102 0.08087291042986129 0.1362426180798141 5.089319481154136 0.025853179392063795 0.02427095987877942 420.1794523400403 -2.62343481067458 0.2310282677630363 WFVVLEETPWDATSHIDNMENER ddPTM_BT-474_Trastuzumab_2h_R1 1 WFVVLEETPWDATSHIDNMENER 23 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 0 186.92 2.5863e-17 35088000.0 12149.0 12931.0 12092.0 11647.0 12922.0 13875.0 13183.0 13799.0 16810.0 11771.0 False True 12083.591133880785 13361.400518045439 13794.448494451857 13121.509005806183 14567.5401053054 12915.853908236788 12545.287926049463 14828.751449902207 12667.400742459668 11019.764702339884 1.0965380350920755 1.2124941755978096 1.251791564253891 1.1907249710168517 1.3219465659019196 1.1720625854646693 1.1384351903072536 1.3456504608264042 1.1495164447358783 1.0 13.427805798885787 -0.733139953195692 7.472642997685618 1.0000162702129967 1.218285521648676 0.4028970232683673 0.07546356093539754 0.0 0.0 0.0705187331881954 0.016621424812685942 0.18486727805165873 0.733139953195692 0.21826925143567943 WGDEHIPGSPYR ddPTM_BT-474_Trastuzumab_2h_R1 4 WGDEHIPGSPYR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ;;; 136.7 0.00010532 3590020000.0 4447420.0 5235000.0 5153210.0 4600310.0 3881570.0 4660910.0 4973150.0 4123680.0 7080800.0 4974880.0 False True 4423475.584874815 5409243.810375673 5878737.175495715 5182708.774319595 4375864.931632119 4338712.26230198 4732579.735222094 4431409.941222749 5335831.717858926 4657378.899190954 0.9497779074069386 1.161435203675468 1.2622415531871214 1.1127951765358617 0.9395552791275502 0.9315781164069922 1.01614660040741 0.951481517209721 1.145672669832774 1.0 22.151086826132943 3.335369782077884 6.269627956780809 0.9906922942719515 1.1371403207455104 0.30117117549852157 0.09161029774335955 0.23343964477543086 12.732546399778183 0.025546605972134505 0.034634768931154206 2164.560764760334 -3.335369782077884 0.14644802647355892 WGDIEFPPPFGR ddPTM_BT-474_Trastuzumab_2h_R1 2 WGDIEFPPPFGR 12 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 ; 147.75 0.00015319999999999998 774610000.0 401770.0 414880.0 366670.0 390880.0 407950.0 438990.0 410690.0 391700.0 499960.0 438010.0 False True 399606.9149608438 428689.0299997435 418293.9488472259 440365.36792217114 459900.01439091057 408643.65457130596 390823.3557118452 420930.64301229763 376751.55712076987 410055.826800773 0.974518318831241 1.0454406497387088 1.0200902450544995 1.073915645481424 1.121554638008728 0.9965561464142951 0.9530979202539855 1.0265203308934034 0.9187811329500163 1.0 18.645460812376726 2.4976920120582653 24.642609130003102 0.9804813682375277 1.0482057956985256 0.3798889347872194 0.043961754784933894 717.4748983994074 859494.8482308309 0.014396079570440359 0.01342130845618161 314.5516821674527 -2.4976920120582653 0.06772442746099783 WGDKPGVSPSIGLSVGSGWPSS(ph)PGSDPPLPKPCGDHPLNHR ddPTM_BT-474_Trastuzumab_2h_R1 1 WGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHR 41 2 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 WGDKPGVSPSIGLSVGS(0.001)GWPS(0.158)S(0.803)PGS(0.038)DPPLPKPCGDHPLNHR 127.62 4.2428e-09 221230000.0 253860.0 223960.0 211410.0 182980.0 198940.0 290980.0 256190.0 60148.0 324950.0 180930.0 True False 252493.24596649766 231414.37321332085 241174.69039133852 206145.24923863797 224273.82979023826 270865.2374932429 243797.1109591605 64636.549185355354 244870.42660691665 169382.8924980336 1.490665569838636 1.3662204594599623 1.4238432632394584 1.2170370112260964 1.3240642338944704 1.5991298383122572 1.4393254676648695 0.3816002208493738 1.4456620913458507 1.0 17.369928645715067 1.7856126904970597 24.999999999927315 0.8774090778012343 1.4042752854213996 0.39700604666821615 0.2595669024859179 80.93990286546925 43019.05639661127 0.11263998971606153 0.06303378465137785 61.039742169007916 -1.7856126904970597 0.5268662076201652 WGDYDSHDIER ddPTM_BT-474_Trastuzumab_2h_R1 2 WGDYDSHDIER 11 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ; 174.84 1.0533e-05 2284500000.0 2285200.0 2671000.0 2355300.0 2391300.0 2140400.0 2465900.0 2427900.0 2053700.0 2866000.0 2550500.0 False True 2272896.737109589 2759902.620346405 2686905.767365405 2694038.334814484 2412967.2528552604 2295438.137104225 2310453.2015213165 2206957.5224772966 2159712.702432447 2387724.9064070913 0.9519089619623354 1.1558712701537066 1.125299551952366 1.128286733360886 1.0105717146813835 0.961349496730034 0.9676379365652936 0.9242930442092666 0.9045065018324311 1.0 21.187205200305552 2.982749844088864 2.7736641162655875 0.9461258655857421 1.0972421750674635 0.5625201326825344 0.05712282393913602 0.18283528482497186 2.8352106926918723 0.01784813449801517 0.0204833692818429 961.058544134019 -2.982749844088864 0.1511163094817214 WGEEKR ddPTM_BT-474_Trastuzumab_2h_R1 2 WGEEKR 6 1 Q15126 Q15126 PMVK Phosphomevalonate kinase 0 ; 118.06 0.035584 474180000.0 577280.0 578820.0 533090.0 522910.0 531780.0 621270.0 659380.0 538490.0 931070.0 640870.0 False True 574171.9886218377 598085.6737959209 608144.4382986553 589110.3523848293 599499.0308929975 578323.0672122715 627483.2703237876 578674.8581968141 701620.2741988064 599969.1279235889 0.9570025554630927 0.9968607482618542 1.0136262184078706 0.9819011095181842 0.9992164646334083 0.9639213757777314 1.045859263618149 0.9645077242549607 1.1694272947460118 1.0 19.194528741595597 1.263621054026506 24.999977283422886 1.0847138581888085 0.9918675774068043 0.4077200356344268 0.0454585107783183 167.46410155208366 167060.53683962068 0.02685801257050343 0.009798761925616241 18.349365609156226 -1.263621054026506 -0.09284628078200419 WGEPEPFLR ddPTM_BT-474_Trastuzumab_2h_R1 2 WGEPEPFLR 9 0 A0A087WYJ2;M0R2B7;P28340;M0QZR8;A0A2R8Y7K6 A0A087WYJ2 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit 0 ; 107.66 0.006367 106004000.0 184885.0 206540.0 190292.0 182543.0 183628.0 218250.0 211810.0 184066.0 255980.0 219920.0 False True 183889.59970265473 213414.5590439334 217083.45955228532 205652.92508344454 207011.93735157282 203162.89120523832 201563.94110722427 197801.93958820953 192897.15895626595 205884.51731701512 0.8931686660998736 1.0365741038959415 1.054394290455685 0.9988751352622889 1.0054759826005844 0.9867808121404966 0.979014564737094 0.9607421780222537 0.9369192082532772 1.0 17.651475816646837 2.241714639135281 1.7991129317349026 0.9625168062224422 1.0028860825424908 0.08542193026250067 0.04242947979718722 0.7105974867452889 4.606247796449334 0.021548086980696855 0.01366304935201497 174.46754064069083 -2.241714639135281 0.04036927632004861 WGGRPGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGS(ph)PEPPTS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 1 WGGRPGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVSGSPEPPTSPR 46 3 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 WGGRPGLRPGSSLLDQDCRPDSDGLNLSSMNSAGVS(0.056)GS(0.94)PEPPT(0.217)S(0.787)PR 75.34 0.00023546 191000000.0 17517.0 17452.0 16863.0 18821.0 20942.0 17651.0 18666.0 18816.0 19011.0 17635.0 True False 17422.690418321654 18032.87927004321 19237.16382417646 21203.73667023938 23608.839567041145 16430.827915984697 17763.054268955413 20220.145465712 14325.993784348648 16509.519201916904 1.055311799528282 1.0922716191486321 1.1652164783782952 1.2843339900399664 1.4300137562031452 0.995233581004402 1.0759280177519017 1.2247567732538365 0.8677414289984453 1.0 14.011010485560137 1.2400025017068412 24.999684992242553 0.9338706636537569 1.1683529669463115 0.3621244497522389 0.12285552098257539 40.33708859314056 699480.830872465 0.09686756893272012 0.031037982805234926 17.37810839193728 -1.2400025017068412 0.2344823032925546 WGLLSMPVDEEVESLHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 WGLLSMPVDEEVESLHLR 18 0 O75165;A0A3B3IRM0 O75165 DNAJC13 DnaJ homolog subfamily C member 13 0 112.3 0.00027985 27885000.0 23331.0 33822.0 37442.0 32940.0 30293.0 35399.0 32314.0 31423.0 30955.0 32294.0 False True 23205.388488317778 34947.74482416927 42713.50814830189 37110.2006225857 34150.63398932183 32951.95045028285 30750.84836853236 33767.94382276089 23326.555025748894 30232.969271715614 0.7675524120625336 1.1559481475365554 1.4128122105512941 1.227474558951246 1.1295825323141973 1.0899343082755346 1.0171296141031456 1.1169244912491085 0.7715601737991379 1.0 14.883835056934258 1.6722431685623702 1.2053316361262392 0.9162482179153587 1.1500427766584895 0.18944014221115413 0.1670019268465372 0.7322775284255564 2.012545608625388 0.14615596615811868 0.05497389819153677 47.0157283650216 -1.6722431685623702 0.23379455874313082 WGMEYK ddPTM_BT-474_Trastuzumab_2h_R1 1 WGMEYK 6 0 P62306;A0A0B4J254;F8W0W6 P62306 SNRPF Small nuclear ribonucleoprotein F 0 101.52 0.084748 279480000.0 546060.0 549000.0 636920.0 427680.0 367360.0 509680.0 563970.0 440170.0 809690.0 527720.0 False True 543120.0736329696 567273.1331224919 726592.7997921165 481824.2441489816 414141.11848668865 474447.0212576667 536688.6165253827 473017.7205379709 610152.7487901358 494040.4577961769 1.099343313006647 1.148232142065839 1.4707151779295822 0.9752728476900665 0.8382736918634064 0.9603404210539499 1.086325235223551 0.9574473366979204 1.2350258752327985 1.0 18.91426966578504 3.679158880977762 24.99934946792282 0.9992220499356009 1.2303117067828864 0.3912095173414789 0.13213991209508547 242.76273188469668 102167.00897411529 0.03506750807760388 0.054326367855324555 4777.040034800739 -3.679158880977762 0.23108965684728544 WGNNNR ddPTM_BT-474_Trastuzumab_2h_R1 1 WGNNNR 6 0 Q9BUJ2-2;Q9BUJ2;A0A0A0MRA5;B7Z4B8;Q9BUJ2-4;Q9BUJ2-3;M0R3F1;Q9BUJ2-5 Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 107.29 0.073034 404790000.0 152910.0 157470.0 147580.0 157680.0 157790.0 138000.0 187340.0 169640.0 184060.0 167480.0 False True 152086.74954989794 162711.29375737486 168357.9812116443 177642.2718327053 177883.6212053971 128460.38481705777 178277.64849170184 182299.39821446562 138700.87927763996 156791.28301315792 0.9699949297381208 1.0377572696035668 1.073771309068985 1.1329856380969696 1.1345249416095988 0.8193082060963642 1.137038010440547 1.1626883504688654 0.8846211129352145 1.0 17.258485827874186 1.2264290402674487 24.987362896502436 0.9423105710712242 1.0641294714416716 0.17454523991565818 0.10048363614667674 430.2799654596247 886217.9878176376 0.09473183244806668 0.02439815424543679 16.843371990497104 -1.2264290402674487 0.1218189003704474 WGQIVLK ddPTM_BT-474_Trastuzumab_2h_R1 1 WGQIVLK 7 0 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 83.801 0.08419199999999999 0.0 106200.0 122530.0 107150.0 112290.0 101650.0 122880.0 125480.0 117040.0 157050.0 124350.0 False True 105628.2309999292 126608.33697905076 122235.78863550424 126505.90248664677 114594.52497324687 114385.59482840638 119410.05301985033 125774.11911707769 118347.13186218265 116413.87653860875 0.9073508600574565 1.0875708355701135 1.0500104649892374 1.0866909190562948 0.9843716950293422 0.9825769764695561 1.0257372795265338 1.080404869735307 1.0166067429507233 1.0 16.828903512238153 1.9741478208285224 24.19527728781768 1.0442210766627942 1.021361388401661 0.0 0.05419464788083596 2086.096944761311 1952390.8221812344 0.022126112009740344 0.01434769368699724 94.22102420848717 -1.9741478208285224 -0.02285968826113316 WGQPPS(ph)PTPVPRPPDADPNT(ph)PSPKPLEGRPER ddPTM_BT-474_Trastuzumab_2h_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 WGQPPS(0.954)PT(0.046)PVPRPPDADPNT(0.596)PS(0.403)PKPLEGRPER 108.14 8.6465e-06 1074800000.0 134890.0 112780.0 107780.0 98182.0 107430.0 150740.0 149480.0 144470.0 199520.0 150110.0 True False 134163.767227688 116533.8141230503 122954.48715944594 110611.83113317286 121110.57371250265 140319.69860379188 142249.0813309469 155251.08500379542 150350.96943102658 140529.85128436316 0.9546994179635659 0.8292459791140268 0.8749350122818151 0.7871055873342456 0.8618138609385884 0.998504569110046 1.01223391351283 1.104755207415994 1.0698863483943373 1.0 17.10051709403269 2.5649853273809904 2.234710116384789 1.0607043914655652 0.8549414201051309 0.7681056621091967 0.04853739543917969 0.13422214699633797 1.3332084783121798 0.018379231252608125 0.016247795343809483 367.2698920921382 -2.5649853273809904 -0.2057629713604343 WGQPPS(ph)PTPVPRPPDADPNTPS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 WGQPPSPTPVPRPPDADPNTPSPK 24 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 WGQPPS(0.944)PT(0.056)PVPRPPDADPNT(0.265)PS(0.735)PK 86.507 2.2272e-05 0.0 226190.0 160550.0 137020.0 142720.0 136840.0 226110.0 193100.0 171970.0 249070.0 192680.0 True False 224972.21817207144 165893.80969547544 156311.2250008098 160788.33736658885 154265.76288577565 210479.54790568806 183759.015286365 184803.27464596595 187690.03586700975 180382.9974383528 1.2471919269938807 0.9196754242437448 0.8665518769540921 0.8913719122642889 0.8552123264194958 1.1668480449639993 1.0187158318464355 1.0245049548482186 1.0405084655007697 1.0 17.460703833720864 2.7491358380566333 24.995546050320097 1.0467260050377414 0.9454227629992079 0.144998203491851 0.11266642275022258 1369.1748612510412 3236175.4244359103 0.03480232135209278 0.036558326929341856 561.2234873268885 -2.7491358380566333 -0.10130324203853347 WGQPPS(ph)PTPVPRPPDADPNTPS(ph)PKPLEGRPER ddPTM_BT-474_Trastuzumab_2h_R1 4 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 WGQPPS(0.94)PT(0.06)PVPRPPDADPNT(0.338)PS(0.662)PKPLEGRPER;WGQPPS(0.941)PT(0.059)PVPRPPDADPNT(0.059)PS(0.941)PKPLEGRPER;WGQPPS(0.983)PT(0.017)PVPRPPDADPNT(0.221)PS(0.779)PKPLEGRPER;WGQPPS(0.991)PT(0.009)PVPRPPDADPNT(0.007)PS(0.993)PKPLEGRPER 176.04 4.6844999999999995e-15 5000000000.0 986088.0 775314.0 713458.0 695770.0 681926.0 1047155.0 1019136.0 964955.0 1389768.0 1001066.0 True False 980779.0117726758 801119.8578027907 813906.6849118941 783854.410661095 768765.2340079322 974767.6395877253 969836.4982024088 1036964.8420422047 1047278.2983371014 937177.1108242773 1.0465247181613828 0.8548222620355934 0.8684662434788203 0.8363994399859702 0.8202987729094009 1.0401103786352464 1.0348486822831242 1.1064769188933359 1.1174817291642842 1.0 19.837962193358774 2.6246327022893925 4.931458153378688 1.0713085171204664 0.8804355317458924 0.6330699938188404 0.06636282980400457 0.14045959363046587 5.165984269997843 0.02202783543491254 0.020680424829166242 421.34001102980073 -2.6246327022893925 -0.19087298537457398 WGQPPS(ph)PTPVPRPPDADPNTPSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 WGQPPSPTPVPRPPDADPNTPSPK 24 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 WGQPPS(0.49)PT(0.49)PVPRPPDADPNT(0.012)PS(0.008)PK;WGQPPS(0.5)PT(0.5)PVPRPPDADPNTPSPK 197.35 1.1365e-24 2911900000.0 1470520.0 1103830.0 1115080.0 969490.0 989400.0 1442240.0 1278600.0 1215470.0 1660260.0 1454390.0 True False 1462602.8837101304 1140570.3142706733 1272073.5715508896 1092227.3345959503 1115394.2253667514 1342541.3434677776 1216749.2332736726 1306174.5434316013 1251111.1693442068 1361569.5850340773 1.0742035513914072 0.8376878617203595 0.9342699672004294 0.8021825300751075 0.8191973716413733 0.9860247748073607 0.8936372012475733 0.9593153062382122 0.918874204518085 1.0 20.376839284660896 2.7202755443117574 24.723639873243265 0.9451276913663692 0.8875980019586603 0.11878087706654483 0.07725977372949767 1589.8735637520044 2149699.3113396214 0.02431561172853162 0.022966930010676494 525.1405374597767 -2.7202755443117574 -0.05752968940770886 WGQPPS(ph)PTPVPRPPDADPNTPSPKPLEGRPER ddPTM_BT-474_Trastuzumab_2h_R1 3 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 WGQPPS(0.816)PT(0.162)PVPRPPDADPNT(0.012)PS(0.009)PKPLEGRPER;WGQPPS(0.754)PT(0.121)PVPRPPDADPNT(0.041)PS(0.084)PKPLEGRPER;WGQPPS(0.694)PT(0.221)PVPRPPDADPNT(0.071)PS(0.013)PKPLEGRPER 184.83 6.8016e-19 7550000000.0 1324120.0 1177810.0 1167020.0 1098960.0 1091150.0 1438410.0 1434790.0 1391090.0 1945220.0 1479280.0 True False 1316991.0850435626 1217012.6938488209 1331326.2720803192 1238088.2233210914 1230101.484747253 1338976.1023529286 1365383.7262699315 1494900.1996118915 1465846.5956125755 1384871.0839246735 0.9509846081205324 0.8787913243157998 0.9613358871696489 0.8940097296366353 0.8882425945822991 0.9668597444885049 0.9859283958767371 1.079450800124586 1.0584715159611973 1.0 20.40132025300735 2.181890974964954 1.9943327215352942 1.0522399958513462 0.9154637027351896 0.7361485738893299 0.03331133101600864 0.14637595398984982 1.1571479366066966 0.01598907366745944 0.009884926118151593 152.0165860270895 -2.181890974964954 -0.13677629311615658 WGQPPSPT(ph)PVPRPPDADPNTPSPKPLEGRPER ddPTM_BT-474_Trastuzumab_2h_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 WGQPPS(0.131)PT(0.85)PVPRPPDADPNT(0.013)PS(0.007)PKPLEGRPER 152.31 1.142e-10 4324800000.0 791790.0 745180.0 695610.0 735560.0 700840.0 942910.0 1016000.0 848970.0 1196800.0 966060.0 True False 787527.0906161389 769982.8658291774 793545.8416494919 828681.8205813338 790087.8197958701 877728.8510713909 966852.198503091 912324.4523823091 901864.6762983789 904405.2237144221 0.8707679588378969 0.8513693260934876 0.8774228861597824 0.9162727048146739 0.8735993546686444 0.9705039600131118 1.0690475609287142 1.0087562836439208 0.9971909191262639 1.0 19.78660979934926 2.599119690927171 3.426951588484456 1.0203796808584034 0.8782543585173785 0.8811286908608948 0.024524389787939922 0.07933227279278401 1.723026593701202 0.008630844358746448 0.007994085339302055 397.30102996806966 -2.599119690927171 -0.14212532234102482 WGQPPSPTPVPRPPDADPNT(ph)PSPKPLEGRPER ddPTM_BT-474_Trastuzumab_2h_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 WGQPPS(0.008)PT(0.016)PVPRPPDADPNT(0.766)PS(0.209)PKPLEGRPER 77.321 0.0017425999999999993 1297700000.0 448100.0 411850.0 394970.0 360230.0 382890.0 486990.0 484450.0 464960.0 657660.0 497980.0 True False 445687.4793885902 425558.1782814179 450578.3428592167 405835.0810647858 431648.7719331674 453325.52755115204 461015.3027212825 499657.67621903995 495588.5051925063 466198.49005787185 0.9560036956217179 0.9128261617247858 0.9664946422355075 0.8705199388663982 0.9258905404854152 0.9723873783779913 0.9888820160358179 1.0717702585373339 1.0630418496872138 1.0 18.830584806253338 2.1892949748237216 1.8148642568595605 1.0508618670552048 0.9260940775324477 0.7131173463248074 0.03192089632937196 0.16964691709811416 1.1039550204148556 0.016437152956609042 0.009915663661076952 154.6304340019501 -2.1892949748237216 -0.12476778952275713 WGRDDIENIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 WGRDDIENIAR 11 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 ;;; 224.03 5.9344e-12 2052050000.0 956240.0 1373630.0 1288160.0 1251670.0 1250020.0 1399900.0 1305730.0 1253560.0 1565300.0 1389260.0 False True 951091.7100882526 1419350.4441731286 1469521.7311125633 1410131.2936633849 1409202.6375509885 1303128.2080101399 1242566.8515270092 1347107.0126486993 1179552.788945397 1300596.2373946726 0.7312736133955452 1.0913075121732951 1.1298831173433799 1.084219108989682 1.0835050856166353 1.0019467768264032 0.9553824744381033 1.0357611177987076 0.9069323399768191 1.0 20.310741724525993 -0.3638324906169298 7.8476905871759435 0.9999927106717297 1.0131653244147454 0.0 0.11155681701234127 0.0 0.0 0.10400691959231963 0.024514666044684406 0.4326806857890883 0.3638324906169298 0.013172613743015704 WGTDEDKFTEILCLR ddPTM_BT-474_Trastuzumab_2h_R1 1 WGTDEDKFTEILCLR 15 1 P12429;D6RA82;D6RFJ9 P12429 ANXA3 Annexin A3;Annexin 0 132.08 4.5266e-05 603720000.0 1150600.0 1017900.0 1035600.0 934920.0 891220.0 1186000.0 1080600.0 1003200.0 1317800.0 1220600.0 False True 1144405.297443678 1051780.1861664557 1181403.4784034346 1053280.7761404926 1004711.5843252034 1104014.6115437013 1028327.2497071273 1078063.87814638 993045.8476153107 1142700.2629917637 1.0014921099671843 0.9204340107638854 1.0338699628110175 0.9217472072534952 0.8792433299128812 0.9661454077670575 0.8999098740161393 0.9434353986441241 0.8690344089143421 1.0 20.124015595094637 3.668407871427134 24.966904984808572 0.9227841205379672 0.9787824378537053 0.26178059043267077 0.04531336710741838 197.4926512508078 70285.83366269302 0.011011482447959697 0.017058918196749366 4660.235581305656 -3.668407871427134 0.05599831731573812 WGTDEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 WGTDEEK 7 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ;;; 179.97 0.0016129000000000002 2464400000.0 3100260.0 2320420.0 1927970.0 1547910.0 1580180.0 2391270.0 2144840.0 2144840.0 3185410.0 2372730.0 False True 3083568.5446312656 2397653.776976486 2199411.41778435 1743875.2472892103 1781406.5565393514 2225967.1333441 2041085.895115522 2304898.8520768364 2400408.3878071657 2221300.3400036437 1.3881817281071533 1.0793919821632734 0.9901458970562901 0.7850695450244022 0.8019656434826951 1.0021009285671152 0.9188698431983195 1.037634943176147 1.0806320714844118 1.0 21.08297304088513 4.709519176929341 2.0315964067293266 0.9467349053155929 1.4975414030392684 0.6831430337296233 0.09011629257297192 0.41545709402008757 1.960624127415932 0.025297129168520914 0.4145372207640141 51229.389087626165 -4.709519176929341 0.5508064977236755 WGTDEEKFITIFGTR ddPTM_BT-474_Trastuzumab_2h_R1 2 WGTDEEKFITIFGTR 15 1 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ; 205.42 4.0222e-09 1992820000.0 2046810.0 2669400.0 2088880.0 2142800.0 2260200.0 3229600.0 2800900.0 2594800.0 4375300.0 3370100.0 False True 2035790.202381971 2758249.365313625 2382976.147129558 2414078.260293768 2548023.0727450326 3006345.353660649 2665409.766522943 2788437.1521274215 3297065.9410162913 3155017.3327122284 0.6452548394185501 0.8742422226068978 0.7552973235430752 0.7651553084237708 0.8076098493426057 0.9528776030768197 0.8448162039831358 0.8838104067499134 1.0450230833381666 1.0 21.589216500284547 2.442564452863972 0.3701577215530162 1.0222562261254522 0.7104611191608751 0.6475247505973462 0.0682650907229309 0.9920828848855445 0.3042001171988162 0.07707486898093774 0.1120896245511266 277.0540179546231 -2.442564452863972 -0.31179510696457713 WGTLTDCVVMR ddPTM_BT-474_Trastuzumab_2h_R1 2 WGTLTDCVVMR 11 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 179.37 1.6593e-05 797440000.0 565240.0 596800.0 622250.0 575610.0 521310.0 578780.0 560510.0 486720.0 661750.0 599060.0 False True 562196.8106440675 616664.1272267824 709857.3913060431 648482.166981377 587695.7384535493 538770.3009015702 533395.9899438663 523041.5179140812 498670.5794956979 560827.4779189309 1.0024416291623544 1.0995611868288715 1.265732189050578 1.1562952824417723 1.0479082455701327 0.9606702990031649 0.9510874751057936 0.932624627906852 0.8891693063009691 1.0 19.09719751081498 2.911128214905821 2.475617739972708 0.9400298862978018 1.1375389924149557 0.6333053366753332 0.06597059906209717 0.18817944661877747 2.2703376217405937 0.022978083688471374 0.025384558428595227 814.9448411960971 -2.911128214905821 0.1975091061171539 WGTLTDCVVMRDPQTK ddPTM_BT-474_Trastuzumab_2h_R1 2 WGTLTDCVVMRDPQTK 16 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 218.28 1.2292e-14 1822790000.0 2073500.0 2587100.0 2369500.0 2663100.0 2532700.0 2592900.0 3025400.0 2716300.0 4314000.0 3026000.0 False True 2062336.5063875073 2673210.0595650235 2703105.0039367927 3000248.1869462063 2855224.3325109924 2413658.92603007 2879049.8438496566 2919004.099091922 3250872.504638374 2832878.0893110614 0.7280004438486285 0.9436375217315235 0.9541903741414341 1.059081292014175 1.0078881767924455 0.8520165181612376 1.0162985321227938 1.0304023000869076 1.1475511483902106 1.0 21.433837087125347 5.359654388888641 1.1340401723385152 1.0115842769638579 6.460606903827665e-08 0.5968688673374585 0.06980248891679512 4.123643672974379 1.625453205996863 0.020639843631234715 6.990481395839354 228904.53078029497 -5.359654388888641 -1.011584212357789 WGWPSDNR ddPTM_BT-474_Trastuzumab_2h_R1 3 WGWPSDNR 8 0 Q9BTL3;A0A3B3IU46 Q9BTL3 FAM103A1 RNMT-activating mini protein 0 ;; 100.15 0.014677 749320000.0 1066390.0 1396040.0 1317770.0 1290490.0 1178510.0 1299900.0 1333730.0 1097500.0 1403840.0 1216760.0 False True 1060648.6747270664 1442506.3474759986 1503300.5617378284 1453865.9016830795 1328586.2629239634 1210040.972635461 1269212.384556623 1179401.0229920787 1057882.4424922424 1139105.3350793535 0.9311243149020791 1.2663502689814978 1.3197204116624597 1.2763226164521464 1.1663418842923863 1.0622731150242273 1.1142186288401552 1.0353748566280905 0.928695889584739 1.0 20.119469731093726 2.157593228239357 1.011902302258414 0.9779341810334616 1.2074258336752461 0.3956869840849321 0.10547642716342932 0.545767387243705 1.0495017284406523 0.08063060162099693 0.04265693011970148 143.74515921564495 -2.157593228239357 0.2294916526417845 WHPDKNPENKEEAER ddPTM_BT-474_Trastuzumab_2h_R1 2 WHPDKNPENKEEAER 15 2 E9PH18;A0A0J9YX62;O75190-3;O75190;C9JDX6;F8WCZ4;C9J2P2;C9J2C4;O75190-2;C9JDR7;C9JN01;C9JB42;Q8WWF6;Q7Z6W7 E9PH18;Q7Z6W7 DNAJB6;DNAJB3;DNAJB7 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 3;DnaJ homolog subfamily B member 7 0 ; 128.06 4.4638e-05 545360000.0 586760.0 517710.0 462780.0 405530.0 423540.0 631530.0 560740.0 471480.0 851080.0 609230.0 False True 583600.949355165 534941.6643876968 527935.4014441306 456870.0564200722 477475.30848174053 587873.8175617147 533614.8639651804 506664.2317269289 641342.7378877195 570348.419811956 1.023235848619653 0.9379208319084449 0.9256366513966866 0.8010367707702292 0.8371642524041081 1.0307275292452582 0.9355945338484734 0.8883416068619533 1.1244753480673626 1.0 19.121483990148693 2.7338172282825006 24.970793102340433 0.9756479345510047 0.9021987405818435 0.21954265564652053 0.0812044781436054 790.273417324682 4160251.8306815503 0.027323207850371484 0.026526919083533888 541.7728387095339 -2.7338172282825006 -0.07344919396916127 WHPHS(ph)PNVRPSFQDDR ddPTM_BT-474_Trastuzumab_2h_R1 1 WHPHSPNVRPSFQDDR 16 1 Q9H329-2 Q9H329-2 EPB41L4B Band 4.1-like protein 4B 1 WHPHS(0.99)PNVRPS(0.01)FQDDR 59.28100000000001 0.062227 72706000.0 34432.0 53386.0 73905.0 61411.0 64493.0 64346.0 61576.0 26456.0 48147.0 48330.0 True False 34246.62193775481 55162.920737481545 84310.18160622433 69185.6263033882 72705.8012700403 59897.91247419134 58597.33363683696 28430.281060845944 36281.816986746315 45245.5380226053 0.7569060604527394 1.2191902925305338 1.8633921772374944 1.5291148989945063 1.6069164927095236 1.3238413132421036 1.2950964050324898 0.6283554645021964 0.8018871820823396 1.0 15.465487904561611 1.8533977679293252 4.750058347170334 0.7845209822718757 1.406427164878913 0.4507216951462698 0.28321349053196976 0.19765777052826522 6.49172148534092 0.13984167570298994 0.08018443872801372 71.35062273835808 -1.8533977679293252 0.6219061826070373 WHQPPPS(ph)PLPLR ddPTM_BT-474_Trastuzumab_2h_R1 2 WHQPPPSPLPLR 12 0 J3QQY0;Q68DK7;J3KSZ8;Q68DK7-2;Q68DK7-3;J3KTC2 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 WHQPPPS(1)PLPLR;WHQPPPS(1)PLPLR 127.88 0.00016869999999999998 1035400000.0 460290.0 589880.0 501550.0 533650.0 511690.0 651040.0 533680.0 218830.0 659230.0 497890.0 True False 457811.84978302673 609513.7992100104 572163.8804492494 601210.0352836334 576850.6884757562 606035.1371833147 507863.8595444191 235160.20579622465 496771.5997294282 466114.23393492505 0.9821880913573272 1.307648972794737 1.2275185754767792 1.289834103988271 1.2375736385606522 1.30018586230929 1.0895695144450852 0.5045119601068775 1.065772215398132 1.0 18.830324044197983 1.9717945575909095 11.22492525349142 0.800375450659359 1.2286842029453 0.4875339066885458 0.16545375904932416 0.6024947410914132 237.88295906201424 0.0641207882396985 0.04177190812657115 93.71185993891707 -1.9717945575909095 0.428308752285941 WIAQDLSSLAGLLDQHGVR ddPTM_BT-474_Trastuzumab_2h_R1 1 WIAQDLSSLAGLLDQHGVR 19 0 A0A2P0CU24;A0A0A0MRV4;J3KPF5;A0A2P0CTB1;A0A0A0MT35;J3KPF6;A0A0G2JRR6;A0A0G2JSF1;J3QKK8;J3KRV9;A0A2P0CTH9;Q8TBF2-2;Q8TBF2;Q8TBF2-7;Q8TBF2-3;Q8TBF2-4;Q8TBF2-6 A0A2P0CU24 FAM213B Prostamide/prostaglandin F synthase 0 184.15 2.5533000000000002e-14 83320000.0 65497.0 92243.0 94693.0 109050.0 108610.0 90166.0 103630.0 84940.0 102850.0 83737.0 False True 65144.37142940083 95313.25249292902 108024.95131368923 122855.71881885147 122440.8397180946 83933.03664793358 98617.02099495598 91278.65411658047 77503.99561939189 78392.83296914755 0.830999071752378 1.2158414090027938 1.3779952480630948 1.567180495533346 1.5618881864657537 1.0706723238458091 1.257985165987915 1.16437499015381 0.9886617524065564 1.0 16.258434142148708 1.5126960751479672 1.2683571932016018 0.9803480870288169 1.2997658660524078 0.2130608804452786 0.20609926086202696 0.6642325498523024 2.0487282018744506 0.19442479519094866 0.06697597641989549 32.56087560656619 -1.5126960751479672 0.3194177790235909 WIDDVR ddPTM_BT-474_Trastuzumab_2h_R1 6 WIDDVR 6 0 P20340-2;P20340;P20340-4;J3KR73;Q9NRW1-2;Q9NRW1;C9JU14;Q53S08;Q9H0N0 P20340-2 RAB6A;RAB6B;RAB6C Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-6C 0 ;;;;; 127.66 0.039465 4922050000.0 8037550.0 11073000.0 10469800.0 10170550.0 11500900.0 11444800.0 9313470.0 8911540.0 10940600.0 9874030.0 False True 7994276.723855747 11441558.111230154 11943856.83486703 11458140.587190015 12965471.443825021 10653647.914161334 8862941.875189543 9576564.366683202 8244435.726529109 9243860.951817613 0.8648200968756284 1.2377466700189177 1.2920852982452662 1.2395405606936363 1.4026034696330683 1.1525106197174586 0.9587922104612391 1.0359918238277015 0.8918822740305297 1.0 23.140064127957938 2.3440933365560768 4.541349314139691 0.9809689052234325 1.2207021337470825 0.4096816203432124 0.1334649865021059 0.21315773940537117 7.570278649769642 0.0481984378266607 0.03957507863295346 220.84793181528292 -2.3440933365560768 0.23973322852364998 WIDFVR ddPTM_BT-474_Trastuzumab_2h_R1 3 WIDFVR 6 0 P05455 P05455 SSB Lupus La protein 0 ;; 166.66 0.016052 3274090000.0 3736370.0 4824630.0 4608650.0 4655700.0 4335210.0 4307170.0 4340210.0 3992190.0 4919110.0 4291630.0 False True 3716253.7990697348 4985214.892999571 5257507.860896092 5245111.14264033 4887273.296697188 4009425.4758875826 4130257.4610876944 4290107.489730058 3706861.253196953 4017734.499150699 0.924962513041941 1.2408024706593692 1.3085752336316563 1.3054897340152973 1.216425151470387 0.9979319133046565 1.0280065698618914 1.0677926803368754 0.9226247413761509 1.0 21.93795080004189 2.741013653773605 24.31705886079354 1.014475509578247 1.2135351634321716 0.45407949283947635 0.10651755657511085 139.80557367564805 1385902.2764076556 0.033933217450031194 0.03446906112627036 550.8250135073271 -2.741013653773605 0.19905965385392466 WIDLTMEDIR ddPTM_BT-474_Trastuzumab_2h_R1 1 WIDLTMEDIR 10 0 A0A0A0MSW4;P48739;P48739-3;P48739-2 A0A0A0MSW4 PITPNB Phosphatidylinositol transfer protein beta isoform 0 116.52 0.0025107 25930000.0 47793.0 55091.0 57979.0 50920.0 42365.0 54278.0 51251.0 41799.0 67155.0 47679.0 False True 47535.68779830151 56924.67063178724 66141.93923749775 57366.4667790548 47759.93163297196 50525.8896166686 48771.79333216725 44918.25363102127 50605.550080897 44636.0853999544 1.0649609474568769 1.2753060695561218 1.481804209415849 1.2852038046130587 1.069984771402484 1.1319516298066816 1.0926539120793304 1.0063215272696642 1.1337362949159673 1.0 15.44592288741295 3.2428375555117745 8.51886297172403 1.072146501788546 1.2916876708039577 0.4858101860016054 0.10255769055417185 0.09923380438292057 66.01310398705556 0.02991233892096845 0.038453607867332075 1749.1922944129662 -3.2428375555117745 0.21954116901541165 WIDNPTVDDR ddPTM_BT-474_Trastuzumab_2h_R1 3 WIDNPTVDDR 10 0 P18206;P18206-2 P18206 VCL Vinculin 0 ;; 194.94 9.5069e-07 1063260000.0 998760.0 1164370.0 1124090.0 1129620.0 1214590.0 1264600.0 1094800.0 973250.0 1200120.0 1131400.0 False True 993382.7871326688 1203125.3515734717 1282352.1012345685 1272629.776177453 1369260.837061051 1177181.1785481982 1041840.3414578581 1045878.8570633614 904366.5067840979 1059193.0833597279 0.9378675170174725 1.135888602819417 1.2106877597491357 1.2015087675428455 1.2927395944824316 1.1113943218116717 0.9836170173554878 0.9874298402193733 0.8538259180427001 1.0 20.014534175665023 2.2615686561023383 3.212224375507857 0.9544059299433143 1.163532529422737 0.5126699363226301 0.09263924592257188 0.2046227440941876 4.39183009397417 0.037905808977184666 0.028644186607728973 182.62854373607811 -2.2615686561023383 0.2091265994794227 WIGLDLSNGKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 WIGLDLSNGKPR 12 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 ; 172.92 3.1422e-05 3287700000.0 1702580.0 1839390.0 1667820.0 1657550.0 1562580.0 1900220.0 1982270.0 1746400.0 2150490.0 1844390.0 False True 1693413.498454421 1900612.9842152658 1902634.559048686 1867395.660047571 1761565.3008627223 1768862.2640367374 1886380.0270932328 1876725.2360395114 1620530.5545896532 1726679.4511382792 0.9807341468841085 1.100732960574891 1.1019037481417944 1.081495270483776 1.0202040104788677 1.0244300196372003 1.0924899962466539 1.086898459816799 0.9385242602622916 1.0 20.719568848382906 1.2416161257392928 24.999854578520097 0.9692621142024055 1.0645160830650595 0.44438096130793125 0.040939971135419084 64.53141225680919 528026.8562751808 0.030175099665138976 0.00996219117566652 17.442796970109377 -1.2416161257392928 0.09525396886265403 WINEAQEAASSDNIMVQYHALGVLYHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 WINEAQEAASSDNIMVQYHALGVLYHLR 28 0 Q9UBF2;Q9UBF2-2 Q9UBF2 COPG2 Coatomer subunit gamma-2 0 107.23 0.00048516 110610000.0 36043.0 61997.0 52081.0 55520.0 54925.0 50683.0 41964.0 34846.0 53318.0 56443.0 False True 35848.94849275377 64060.5326670221 59413.55210383286 62548.82630740619 61919.37318401946 47179.40350494885 39934.04100195247 37446.38546440266 40178.493324596384 52840.7594167165 0.6784336351042816 1.2123317941330751 1.1243886870603341 1.1837230766145743 1.1718108117202963 0.8928600577610805 0.7557431316802592 0.7086647860052568 0.7603693392772412 1.0 15.689363580404779 2.5284137557777853 3.9168447419779056 0.7758647068138277 1.0895263135484197 0.3794264994434343 0.1603819902260188 0.2021251829695547 6.364606718976257 0.053635478296631796 0.048447716049567546 337.60879805612433 -2.5284137557777853 0.313661606734592 WIQDEIEFGYIEAPHK ddPTM_BT-474_Trastuzumab_2h_R1 2 WIQDEIEFGYIEAPHK 16 0 Q9Y2J8;Q9Y2J8-2 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 ; 221.49 1.0516e-14 500020000.0 609350.0 645150.0 628290.0 620990.0 580470.0 726140.0 752360.0 602180.0 838560.0 742160.0 False True 606069.3273051501 666623.4277485888 716747.7708054221 699607.270328461 654389.4137847569 675943.6509496985 715965.472505694 647117.7294080821 631908.1241283154 694794.7134048563 0.8722998543484801 0.9594537996436193 1.0315964658006456 1.006926588286806 0.9418457008371691 0.9728681550226862 1.0304705241597047 0.9313797542253421 0.9094889640590904 1.0 19.406227251263452 4.712246821010244 4.201931741576881 0.9766013424564085 0.8663181255254947 0.39428615351186913 0.039018125605905334 0.2068404611760157 7.970486388661208 0.009732192755528581 0.06475894652836899 51552.154583546966 -4.712246821010244 -0.11028321693091381 WIS(ph)ENQDSADVDPQEHSFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 WISENQDSADVDPQEHSFTR 20 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 WIS(1)ENQDSADVDPQEHSFTR 140.57 1.2941e-07 147000000.0 27175.0 33544.0 26355.0 30603.0 28301.0 24289.0 27738.0 29859.0 35255.0 32999.0 True False 27028.692819426335 34660.49176222379 30065.554918233443 34477.336662203714 31904.96459683087 22609.958600155936 26396.206970549956 32087.230200929804 26566.877642796906 30892.975568134734 0.8749138703008491 1.1219538139270453 0.9732165440626978 1.1160251166535784 1.0327579007876462 0.731880247349093 0.8544404184159239 1.0386578052399364 0.8599649970331741 1.0 14.914991215573114 2.8938050722437523 23.179811060333705 0.9048866139163331 1.031591507397313 0.27428680190675003 0.10231702133943621 23.75404542306346 5168.666644249586 0.03132176364269803 0.03322171065880462 783.0780888726318 -2.8938050722437523 0.1267048934809799 WISIMTER ddPTM_BT-474_Trastuzumab_2h_R1 2 WISIMTER 8 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;A6NMY6;H0YL33;H0YNP5;H0YN28 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 199.07 0.00030447 1234610000.0 612240.0 886460.0 833340.0 689360.0 562080.0 836830.0 725340.0 616660.0 1222530.0 669100.0 False True 608943.7678662593 915965.285223615 950667.0284788702 776632.9053183264 633657.5562908275 778981.9117859307 690252.5331321179 662678.3005360321 921253.8625627148 626397.4651546701 0.9721363858263682 1.462274891226523 1.5176738115377455 1.2398404344221927 1.011590230708173 1.2435904599224146 1.101940176213326 1.0579198310970233 1.4707177372361155 1.0 19.25671884891732 3.477785436281737 24.959956032769973 1.1437502493010248 1.3396703727797525 0.14185055432537785 0.1859891064369334 38.12184753975158 1432652.9753885944 0.04971574692510993 0.06811045313378551 3004.5915137770717 -3.477785436281737 0.19592012347872778 WISLNTVALVTDNAVYHWSMEGESQPVK ddPTM_BT-474_Trastuzumab_2h_R1 6 WISLNTVALVTDNAVYHWSMEGESQPVK 28 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 297.46 2.2565999999999997e-71 1938102000.0 666970.0 899836.0 888586.0 1042081.0 1016639.0 1087198.0 1122873.0 1043466.0 1186480.0 1216798.0 False True 663379.1076273329 929786.4972976511 1013691.1850720316 1174008.3477530286 1146101.950558551 1012042.5612488096 1068555.3431985842 1121334.7315329865 894087.9020174629 1139140.909886821 0.5823503500486544 0.8162172820130126 0.8898733916708746 1.0306085380338696 1.0061107810379855 0.8884261397910472 0.9380361410290762 0.9843687657959685 0.7848791086840123 1.0 20.11951478645017 4.6998081336396 1.6690005397220915 0.9477662016105616 0.4722618984169674 0.7246465756061593 0.06794679302094833 0.44701023235703036 1.2904554343590673 0.017645110746109294 0.3338819483583671 50096.586371326775 -4.6998081336396 -0.47550430319359416 WIVEER ddPTM_BT-474_Trastuzumab_2h_R1 6 WIVEER 6 0 O95433;O95433-2;G3V3W9 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 ;;;;; 137.44 0.029627 3909520000.0 4030420.0 5075170.0 4595910.0 4917870.0 4772170.0 4672290.0 4785330.0 4286230.0 5199980.0 4710490.0 False True 4008720.666541762 5244093.965444947 5242974.179634154 5540471.837759428 5379877.562632349 4349305.589687615 4553845.306164173 4606090.24763493 3918514.6051621283 4409862.495346615 0.9090352977608379 1.1891740322920796 1.1889201046895808 1.2563819945873271 1.2199649236930439 0.9862678471895889 1.0326501814896705 1.044497476394191 0.8885797707518164 1.0 22.072302240895105 2.7289902351636783 24.646084903124624 1.00090025717459 1.1624947328588588 0.4093955360658337 0.09670005319331328 580.8581913084469 1495849.1583906445 0.031538345983643246 0.030098170441337977 535.784610600332 -2.7289902351636783 0.16159447568426888 WIVNLIR ddPTM_BT-474_Trastuzumab_2h_R1 2 WIVNLIR 7 0 P60228;E5RGA2;H0YAW4 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 ; 117.7 0.012033 111916000.0 170475.0 221780.0 210016.0 215554.0 179358.0 195711.0 213573.0 172137.0 271910.0 204513.0 False True 169557.181541553 229161.81323115868 239584.42730820397 242843.1142987504 202198.17816184563 182181.95922413917 203241.6580619102 184982.73703397496 204901.42390732976 191460.80524761174 0.8855973488791541 1.1969124068750736 1.2513497318595055 1.2683698576566997 1.0560813107431961 0.9515365768389386 1.061531407428599 0.9661650424730072 1.0702003662960446 1.0 17.546689556600633 3.0155356844397088 21.974018479300405 1.0081813753553028 1.1612128193424924 0.28718372992080043 0.10420132602857023 68.20732808404752 96470.89330570832 0.030246114047934893 0.0361287207394664 1036.4197598741628 -3.0155356844397088 0.1530314439871896 WIYEDVER ddPTM_BT-474_Trastuzumab_2h_R1 8 WIYEDVER 8 0 O43852;O43852-3;O43852-6;O43852-5;O43852-10;O43852-13;O43852-14;O43852-11 O43852 CALU Calumenin 0 ;;;;;;; 159.2 0.00083884 7333740000.0 6256860.0 8745940.0 8057300.0 8347390.0 7393140.0 7314170.0 7720780.0 6693220.0 8582530.0 7100670.0 False True 6223173.760962503 9037043.325867623 9191697.804692933 9404168.718122816 8334612.556426071 6808558.6436041985 7347296.375156201 7192702.063882486 6467480.481509961 6647499.161410568 0.9361676639372414 1.35946513214001 1.3827301939429653 1.414692727261254 1.2537967067087985 1.0242285825515551 1.10527225303134 1.0820162423843358 0.9729193377043754 1.0 22.66438025940954 2.7980966358151127 5.035272716014917 1.0507601048587203 1.2916041079415153 0.44044069623558824 0.12973638017763825 0.2034625889818517 10.826932342492496 0.04059366642252803 0.04272019870256781 628.1981250017704 -2.7980966358151127 0.24084400308279497 WIYTDELEFR ddPTM_BT-474_Trastuzumab_2h_R1 5 WIYTDELEFR 10 0 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 0 ;;;; 135.79 0.00031364 150625500.0 194143.0 227165.0 217436.0 201537.0 214468.0 226511.0 223591.0 206377.0 221625.0 224326.0 False True 193097.75565931495 234726.04970085763 248049.09881240746 227051.56353594578 241779.22854857158 210852.82771954068 212775.0491294339 221777.89970117187 167008.48837285087 210009.32262484892 0.9194723036379484 1.117693475542329 1.181133750216942 1.08114992562278 1.151278550526421 1.0040165126202447 1.0131695415709023 1.05603835548456 0.7952432124700827 1.0 17.680093847119196 1.3463744092307124 7.389203162319586 0.8988611960341607 1.070288571795646 0.38240163068947286 0.08525306418162155 0.20957774882819155 12.55894360104473 0.05683079132000096 0.020638124688302496 22.2010957170321 -1.3463744092307124 0.17142737576148537 WKDSDEADLVLAK ddPTM_BT-474_Trastuzumab_2h_R1 6 WKDSDEADLVLAK 13 1 Q13185 Q13185 CBX3 Chromobox protein homolog 3 0 ;;;;; 205.3 6.4746e-08 16590630000.0 14224880.0 12470340.0 11278560.0 10882100.0 11098580.0 15119220.0 14460220.0 15141970.0 23099850.0 15658550.0 False True 14148294.826612735 12885407.728420299 12866483.212999092 12259772.744233156 12511918.3765625 14074063.908215633 13760723.915195243 16271940.690765677 17407201.4896316 14659207.933040887 0.9651472911250145 0.8789975411548288 0.8777065767652349 0.836318906194136 0.8535194011650153 0.9600835169609417 0.9387085562910585 1.1100149997933924 1.187458529078977 1.0 23.805303818028083 1.8823959269017327 2.1621507861153 1.1157244938656778 0.8878257716166789 0.7066730353165853 0.058403139679887604 0.15212252219295982 1.316322293212395 0.0346610759375629 0.01665957262116582 76.27740802404037 -1.8823959269017327 -0.22789872224899899 WKDTDEADLVLAK ddPTM_BT-474_Trastuzumab_2h_R1 4 WKDTDEADLVLAK 13 1 P45973 P45973 CBX5 Chromobox protein homolog 5 0 ;;; 152.0 3.6525e-05 6882920000.0 5155610.0 4988700.0 4530620.0 4465170.0 4790820.0 6085700.0 5511000.0 6024400.0 9838200.0 6800400.0 False True 5127852.768602121 5154745.863767164 5168491.915145015 5030460.064175805 5400902.52958515 5665009.883196883 5244411.875935569 6473971.319283344 7413707.435125915 6366392.649884652 0.8054565671024121 0.8096807952711743 0.8118399538612591 0.7901586252721858 0.8483458100378092 0.8898304259162405 0.8237650682809501 1.0168979004775398 1.1645067847425714 1.0 22.60204470785193 1.6417633318952747 3.4146417370575843 1.0856761338104663 0.8254903622745793 0.8492398555303466 0.04577561878301457 0.06489703248592546 1.7893395769682878 0.027026599722334874 0.011819677136564306 43.82917862541314 -1.6417633318952747 -0.26018577153588707 WKEPGSGGPQNLS(ph)GPGGR ddPTM_BT-474_Trastuzumab_2h_R1 5 WKEPGSGGPQNLSGPGGR 18 1 Q9H0W8-2;Q9H0W8;M0R2N0;M0QZC7;M0QZH1;M0QX70;M0QYR7 Q9H0W8-2 SMG9 Protein SMG9 1 WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR 246.59 1.6113999999999997e-24 5269000000.0 2014270.0 1785500.0 1552063.0 1634530.0 1821740.0 2034280.0 1883290.0 1815070.0 2619100.0 2177590.0 True False 2003425.3941264339 1844929.2881424562 1770579.9796265645 1841461.3304078614 2053727.7907010575 1893655.0117800343 1792188.0678335482 1950519.7401387074 1973657.899141949 2038614.3418714034 0.9827387912356847 0.9049918124527916 0.8685213006012755 0.903290677685236 1.0074135889850457 0.9288932059811276 0.8791207002832908 0.9567870195341474 0.9681369637231995 1.0 20.959157446349113 1.236489748752279 2.163766003074318 0.9953082357322937 0.924649930511276 0.25390102797285885 0.041023801777057604 0.4173551038906317 3.346043524593232 0.038940849583280694 0.01124790597721749 17.238114010642892 -1.236489748752279 -0.07065830522101768 WKGYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_BT-474_Trastuzumab_2h_R1 4 WKGYDSEDDTWEPEQHLVNCEEYIHDFNR 29 1 Q9Y232;Q9Y232-2 Q9Y232 CDYL Chromodomain Y-like protein 1 WKGYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;WKGYDS(0.956)EDDT(0.044)WEPEQHLVNCEEYIHDFNR;WKGYDS(0.999)EDDT(0.001)WEPEQHLVNCEEYIHDFNR;WKGYDS(1)EDDTWEPEQHLVNCEEYIHDFNR 282.32 1.1371999999999999e-71 675980000.0 160425.0 150533.0 132583.0 143967.0 146765.0 188935.0 169548.0 158985.0 235684.0 185238.0 True False 159561.28962489302 155543.3999058799 151249.53396790515 162193.20743873107 165454.6528056918 175874.36815515088 161346.31550374246 170849.26800947185 177602.8362037992 173415.9522497694 0.9201073347339946 0.8969382452304743 0.8721777437756235 0.9352842419313633 0.954091308551528 1.014176411532433 0.9304006546719349 0.9851992610426012 1.0241435917498494 1.0 17.40387709025769 3.288722080517827 2.140463274208845 0.9842655867194697 0.8970269750532598 0.6887319050531528 0.02712172591768845 0.18112630736226365 1.7012962784097312 0.008370026083833535 0.011861762727866546 1944.1155792518653 -3.288722080517827 -0.08723861166620994 WKGYT(ph)SDDDTWEPEIHLEDCK ddPTM_BT-474_Trastuzumab_2h_R1 1 WKGYTSDDDTWEPEIHLEDCK 21 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 WKGYT(0.5)S(0.5)DDDT(0.001)WEPEIHLEDCK 130.01 2.2809e-05 63883000.0 79392.0 79351.0 75556.0 86023.0 72294.0 107370.0 104440.0 96372.0 164350.0 110490.0 True False 78964.56229328037 81992.15006630754 86193.62805547498 96913.50297986301 81500.2123798908 99947.76462179353 99387.83820045558 103563.76800710017 123848.1446771711 103438.43360475182 0.7633967331235074 0.7926661996797768 0.8332843513933043 0.9369196690485357 0.7879103495641758 0.9662536558094406 0.9608405187207885 1.0012116811709202 1.1973126463844836 1.0 16.65841280775478 2.335513285680561 0.7715217223005368 1.0848308692635615 0.8058008764518089 0.6975893703173734 0.06945947352670569 0.36839915931558614 0.42831681802808347 0.05383632471871217 0.03558109150946953 216.52761171442538 -2.335513285680561 -0.27902999281175267 WKLGDDIDLIVR ddPTM_BT-474_Trastuzumab_2h_R1 1 WKLGDDIDLIVR 12 1 O15371-2;O15371;O15371-3 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 105.14 0.0018808 250470000.0 154850.0 218520.0 209220.0 216010.0 217960.0 248160.0 271010.0 234180.0 358930.0 271590.0 False True 154016.30480545235 225793.30610187058 238676.35742715994 243356.84385199592 245715.91404986553 231005.28330580468 257900.2109412623 251655.70074194507 270476.51091558876 254256.89368010286 0.6057507530129361 0.8880518550893485 0.9387212829220442 0.957129776619465 0.9664080705674659 0.9085507179854382 1.0143292762230602 0.9897694300417651 1.063792241778478 1.0 17.955927364913965 5.1800727498745465 1.174438486436955 0.9846771440424565 2.9211305212794454e-14 0.8969797781627029 0.03836515980508268 1.14040879548002 0.65400524241673 0.011138284511599414 1.763927243230113 151381.48105204117 -5.1800727498745465 -0.9846771440424273 WKPDYDSAASEYGK ddPTM_BT-474_Trastuzumab_2h_R1 2 WKPDYDSAASEYGK 14 1 Q99747;J3KTJ6 Q99747 NAPG Gamma-soluble NSF attachment protein 0 ; 209.6 5.8417e-09 1311820000.0 1733930.0 1630730.0 1618990.0 1328160.0 1399780.0 1906570.0 1918420.0 1726800.0 2512300.0 1907330.0 False True 1724594.7135377338 1685007.8622528964 1846929.7194866517 1496304.9198206868 1578033.6858539237 1774773.3034830294 1825618.695523917 1855662.5845127276 1893177.3280952652 1785602.566452633 0.9658334648140093 0.9436634410760381 1.0343453544401284 0.837983181662491 0.8837541542006876 0.9939352333083181 1.0224104343391387 1.0392360648312011 1.0602456356547167 1.0 20.767979575195884 2.4861898016031723 4.054308413205984 1.0326117938154016 0.9339174305021586 0.4583485285663079 0.0500313470703833 0.20362123900013943 7.744016112128028 0.018311771139372587 0.016064718549737143 306.3301909324031 -2.4861898016031723 -0.098694363313243 WKPPMIDNPSYQGIWKPR ddPTM_BT-474_Trastuzumab_2h_R1 2 WKPPMIDNPSYQGIWKPR 18 2 P27824;P27824-2;P27824-3 P27824 CANX Calnexin 0 ; 224.19 2.666e-19 1870070000.0 751930.0 1159780.0 1302570.0 909200.0 1341160.0 1560510.0 1168420.0 1040780.0 1481010.0 1084260.0 False True 747881.6924272773 1198382.5761981846 1485960.5338585982 1024304.6267776247 1511948.7763218854 1452635.6167454137 1111899.0608021482 1118448.2885737526 1116034.930017264 1015061.5985183113 0.7367845394988468 1.180600840330742 1.4639116838107753 1.009105879163201 1.4895143098003925 1.4310812455774415 1.0954005770932433 1.1018526266842872 1.0994750778143356 1.0 19.953135848636485 2.0425349145672356 24.999357349759123 1.0834755634389164 1.233442175872884 0.09433147410134846 0.21566177058115238 343.6556790980637 201977.81193919183 0.08177846187079227 0.060397361199576394 110.28968963161921 -2.0425349145672356 0.14996661243396758 WKPPQGTDSIK ddPTM_BT-474_Trastuzumab_2h_R1 1 WKPPQGTDSIK 11 1 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-2;Q9UHX1;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19 A0A0J9YVP6;E9PN18 PUF60 Poly(U)-binding-splicing factor PUF60 0 142.07 3.4501e-05 440250000.0 618350.0 533990.0 540210.0 472400.0 479530.0 581280.0 651650.0 598340.0 852660.0 639530.0 False True 615020.8723051442 551763.5343462281 616266.8724105057 532205.7915637363 540595.3031030111 541097.4817859374 620127.1999552557 642991.1691089567 642533.3680586361 598714.6478708199 1.0272353858258076 0.9215801489214239 1.029316510965793 0.8889139316306928 0.9029264692713034 0.9037652305822421 1.0357642027977505 1.0739526273419153 1.0731879875390498 1.0 19.191509041407244 2.125930459864025 5.8176920608248475 1.056442592630559 0.9441075405372515 0.4897330814138364 0.04991361899230421 0.16435704330166956 7.780061855894375 0.018980895074689058 0.013931336919305088 133.63815152252238 -2.125930459864025 -0.11233505209330741 WKVPTYK ddPTM_BT-474_Trastuzumab_2h_R1 1 WKVPTYK 7 1 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 69.598 0.054086 638680000.0 936960.0 833450.0 830440.0 674920.0 748570.0 995760.0 899000.0 877090.0 1201200.0 1052100.0 False True 931915.511466042 861190.8794188359 947358.7336861229 760364.8027988941 843895.9523779955 926925.4549669094 855511.9354864954 942542.9095727752 905180.3552553572 984954.0772518737 0.9461512297773162 0.8743462251779796 0.9618303589638963 0.7719799535430043 0.8567871049709797 0.9410849463694081 0.8685805310573103 0.9569409694739981 0.9190076737190697 1.0 19.909696935995218 1.693358439149713 6.514861597760641 0.9534575885166559 0.8873120877771637 0.25213729954917663 0.05483821661620238 0.19911993004893475 18.388247195520094 0.02750113145629817 0.01404834781784302 49.358100638307334 -1.693358439149713 -0.0661455007394921 WLAIDANAR ddPTM_BT-474_Trastuzumab_2h_R1 1 WLAIDANAR 9 0 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 74.301 0.096497 147650000.0 92431.0 147550.0 141800.0 153840.0 150770.0 130300.0 144430.0 120270.0 129820.0 140350.0 False True 91933.36176604957 152461.1125541415 161764.20745230495 173316.12822642963 169969.66581619703 121292.6676932074 137443.3691238205 129245.15811868549 97827.6004988766 131392.7428403198 0.6996837099121616 1.1603465249174822 1.2311502443395619 1.3190692612076669 1.2936001040998082 0.9231306468776063 1.0460499275127695 0.9836552257361408 0.7445434076809359 1.0 17.003526068533773 2.717282026420885 24.039429722058543 0.9511305614593875 1.1567842061370033 0.2394848982209078 0.17761107173350946 748.8928005787016 846057.8029438255 0.05912093767271865 0.0557964599186273 521.5332795708179 -2.717282026420885 0.20565364467761582 WLAPDGLIFPDR ddPTM_BT-474_Trastuzumab_2h_R1 2 WLAPDGLIFPDR 12 0 E9PKG1;Q99873-2;Q99873-3;Q99873;E9PQ98;E9PIX6;H0YDE4;E9PNR9 E9PKG1 PRMT1 Protein arginine N-methyltransferase 1 0 ; 137.98 0.00019224 884520000.0 538030.0 605090.0 543560.0 567680.0 537620.0 589050.0 581110.0 533680.0 630230.0 589470.0 False True 535133.3062607523 625230.0548653711 620088.523291784 639548.2297944579 606082.7202766052 548330.3599745497 552999.4892442245 573505.9115721295 474918.2611493373 551849.5199293433 0.9697087465605999 1.132972001036484 1.1236550923722428 1.1589177967869633 1.0982753420791338 0.9936229717926653 1.0020838458191075 1.0392432916233378 0.8605937742052291 1.0 19.07391539642517 2.737352501822286 5.180620032843265 0.9875961151675865 1.1042335757795267 0.45058210170327173 0.06438535994404106 0.17171516080977284 15.375300132351516 0.02046024442220516 0.020428698531267726 546.2010137079116 -2.737352501822286 0.11663746061194025 WLDDLLAS(ph)PPPSGGGAR ddPTM_BT-474_Trastuzumab_2h_R1 9 WLDDLLASPPPSGGGAR 17 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 WLDDLLAS(0.793)PPPS(0.207)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(0.993)PPPS(0.007)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR 222.64 3.4592e-15 5871374000.0 2196624.0 2693625.1 2439064.5 2544283.4 2490097.8 2542439.3 2281779.7 1907780.0 2402755.7 2349313.7 True False 2184797.620451871 2783280.7831227407 2782463.5808713166 2866389.417568743 2807196.9948640093 2366686.455449359 2171401.2986660684 2050148.2311105495 1810628.7530118485 2199378.4883173513 0.9933704599081372 1.265485134962881 1.2651135744262272 1.3032724621043705 1.2763592122844092 1.0760705663080337 0.98727950200482 0.9321488966089818 0.8232456408160479 1.0 21.068664466482872 2.3741636977086595 2.0821175887967867 0.9203781267620208 1.2296687029983042 0.6782193142244051 0.09249639320313158 0.17977037322571032 1.5957348005018068 0.04010391690447635 0.030177973212825136 236.68116467274123 -2.3741636977086595 0.3092905762362834 WLDES(ph)DAEMELR ddPTM_BT-474_Trastuzumab_2h_R1 8 WLDESDAEMELR 12 0 H3BS72;Q9P035;H3BPZ1 H3BS72 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR 283.95 3.1117e-28 4755408000.0 4577370.0 5973990.0 6053651.0 4242171.0 5025689.0 6110794.0 4357542.0 3899512.0 5213719.0 5055933.0 True False 4552725.94851362 6172830.645796782 6905952.441522249 4779229.413640413 5665680.704557515 5688369.194041797 4146751.0460330257 4190513.3867607093 3928867.812705304 4733259.027337989 0.9618586099383828 1.304139623490755 1.4590269414024009 1.0097122059107504 1.1969935876811553 1.2017870057791804 0.8760879178769942 0.8853336279627776 0.8300555262269095 1.0 22.174402444967004 2.2394931696203035 24.968599442441214 0.8875577627810984 1.198655772635589 0.5199424843155602 0.1366716507728833 18.553306864126164 496772.33387052483 0.04907439272793702 0.0388686936680685 173.57739632188796 -2.2394931696203035 0.31109800985449065 WLDGAS(ph)FDNER ddPTM_BT-474_Trastuzumab_2h_R1 4 WLDGASFDNER 11 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 WLDGAS(1)FDNER;WLDGAS(1)FDNER;WLDGAS(1)FDNER;WLDGAS(1)FDNER 145.71 3.7883e-05 997102000.0 1556890.0 1267517.0 1422010.0 1405750.0 1593830.0 1539850.0 1137752.0 834717.0 2040130.0 1317490.0 True False 1548507.8772267404 1309705.5371147923 1622216.6476675079 1583717.8058652072 1796794.8031294611 1433403.7939170024 1082714.5891252856 897007.8211470406 1537367.297841417 1233406.6602400634 1.2554722843197128 1.0618602763664973 1.3152325992400338 1.28401917787355 1.4567740397799886 1.1621501975982622 0.8778245034890213 0.7272604000471766 1.246439919127883 1.0 20.23421711114464 2.3620442526979937 4.496907734793231 0.9163799187912018 1.2691826600530547 0.4671185814847668 0.1534235782595965 0.17021170624385656 5.92411953261592 0.05621683924380059 0.04632585957317737 230.16763361576415 -2.3620442526979937 0.35280274126185285 WLEASEEER ddPTM_BT-474_Trastuzumab_2h_R1 3 WLEASEEER 9 0 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 ;; 198.65 6.0572e-05 1242810000.0 600130.0 710330.0 620460.0 692270.0 670850.0 661230.0 645990.0 642130.0 771740.0 681540.0 False True 596898.9667607119 733972.904646447 707815.374865001 779911.311019958 756278.7710605275 615520.7264679938 614740.9957785552 690049.0012700714 581555.0177861877 638043.5337042498 0.9355144833070128 1.15034925655506 1.109352790954061 1.222348115483712 1.1853090441491456 0.9647002029696992 0.9634781379408259 1.0815077103969641 0.9114660474809451 1.0 19.28329533685417 2.7311825183875107 24.972220116911405 0.9951357068094837 1.1272595137263093 0.4072794992643898 0.08151347018446259 608.562795007793 2059763.0042818787 0.0265256074196968 0.025454384868434377 538.4960455336175 -2.7311825183875107 0.13212380691682557 WLFETQPMESLYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 WLFETQPMESLYEK 14 0 A0A5F9ZH43;A4UGR9-2;A4UGR9-3;A4UGR9;A4UGR9-8 A0A5F9ZH43 XIRP2 Xin actin-binding repeat-containing protein 2 0 ; 59.898 0.05623 1710480000.0 3080600.0 3223900.0 4014800.0 3490800.0 4083100.0 11684400.0 5436500.0 936890.0 3918500.0 2513100.0 False True 3064014.3918868387 3331205.562611297 4580048.942732824 3932734.9220802104 4603058.582570226 10876684.930119064 5173515.725553206 1006805.4892310224 2952838.180209889 2352711.8064268418 1.3023330709341239 1.41590038929185 1.9467105704241476 1.6715752908355628 1.956490620736535 4.623041759899154 2.1989585428274077 0.4279340489050797 1.2550785744959063 1.0 21.165893178920463 4.294129252656999 4.856141379067461 1.8959064759105104 1.3342755345198394 0.03895555032831843 1.0467904557244956 0.8403046193489532 40.26163807011433 0.28594912673885087 0.809867216744279 19684.720498209266 -4.294129252656999 -0.561630941390671 WLGGAVEDYFMR ddPTM_BT-474_Trastuzumab_2h_R1 1 WLGGAVEDYFMR 12 0 Q969E8 Q969E8 TSR2 Pre-rRNA-processing protein TSR2 homolog 0 154.56 0.00016656 153040000.0 107300.0 129280.0 133500.0 141540.0 95737.0 113020.0 121310.0 80407.0 149200.0 135000.0 False True 106722.30872215063 133583.0066485897 152295.63959719823 159458.94948757696 107928.53947234352 105207.19342046288 115441.77185079735 86407.37863847283 112431.659177572 126384.18442068504 0.8444277202194265 1.0569598344990898 1.2050213426251482 1.2617001899288172 0.8539718792114869 0.8324395485298067 0.9134194470609982 0.6836882243972507 0.8896022844387683 1.0 16.94745641195944 3.1470531101869907 8.73590167832049 0.8365572709622874 1.0971928449924095 0.42965411880363824 0.1277311139329615 0.23558923361111608 20.133127265801225 0.03822861803344804 0.04576894352345748 1402.985266156702 -3.1470531101869907 0.26063557403012216 WLHNEDQMAVEK ddPTM_BT-474_Trastuzumab_2h_R1 11 WLHNEDQMAVEK 12 0 P37837 P37837 TALDO1 Transaldolase 0 ;;;;;;;;;; 212.1 2.419e-08 7484640000.0 9466920.0 9240740.0 9006840.0 8116982.0 7580114.0 9887620.0 10553740.0 8179306.0 12877610.0 10089230.0 False True 9415951.154593697 9548312.444754718 10274924.783143308 9144591.088947093 8545396.587044349 9204112.102353899 10043215.276998041 8789687.347394291 9704095.566633318 9445326.70357562 0.9968899382833626 1.0109033540512804 1.0878315918128734 0.9681603798294578 0.9047221822204843 0.9744620161068216 1.063299935744529 0.9305858466565131 1.027396496826281 1.0 23.17116926805289 3.6803642989285277 24.993309583576927 0.9771722586566528 1.0297782295779863 0.18752494743491277 0.047725805200156506 405.97151185627047 174350.29560692524 0.01274013242675241 0.019736929550700305 4790.317496968628 -3.6803642989285277 0.052605970921333456 WLIS(ph)PVK ddPTM_BT-474_Trastuzumab_2h_R1 2 WLISPVK 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 WLIS(1)PVK;WLIS(1)PVK 122.13 0.0045843 1327720000.0 3469500.0 2827800.0 2593100.0 2409900.0 2396300.0 3773600.0 3916500.0 3106700.0 5199700.0 3904300.0 True False 3450820.597497689 2921921.6135588014 2958185.9403707464 2714993.092907389 2701454.6010171277 3512739.9140989073 3727043.932517085 3338537.729502954 3918303.6074103247 3655124.231360598 0.9441048727947454 0.7994041867275011 0.8093256899423031 0.742790920651348 0.7390869447990083 0.9610452864939453 1.0196764040301074 0.9133855700057022 1.0720028539089517 1.0 21.80148901104826 2.642723420214144 5.8203799684389494 0.9862256773239942 0.8035084533261826 0.6746187740258731 0.06471395160049508 0.14518112646871356 7.193565048327511 0.021423532537100803 0.02016562861431752 439.26178313773704 -2.642723420214144 -0.18271722399781165 WLKEDK ddPTM_BT-474_Trastuzumab_2h_R1 2 WLKEDK 6 1 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 92.925 0.042137 2949900000.0 4343200.0 3876610.0 3107250.0 3201630.0 3789160.0 5408630.0 4766280.0 4911490.0 6983800.0 5218100.0 False True 4319816.693774884 4005640.6203897675 3544723.791298833 3606956.0297294767 4271687.065889103 5034744.138645528 4535716.827442243 5278010.323840873 5262736.068125512 4885076.390559825 0.8842884631492604 0.81997502191173 0.7256230011364492 0.7383622570774421 0.8744360833627767 1.030637749774994 0.9284843193460183 1.0804355760004847 1.077308858116425 1.0 22.21994969189043 2.880957907035778 3.014947089576743 1.0260747166156114 0.7895941256958766 0.7833095957748438 0.057610381055977745 0.12341241947739025 2.146867331225217 0.01969619204068152 0.0213227683555541 760.2525876874255 -2.880957907035778 -0.23648059091973483 WLKEDKLECSEELGDLVK ddPTM_BT-474_Trastuzumab_2h_R1 2 WLKEDKLECSEELGDLVK 18 2 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 183.45 3.5554e-14 4045200000.0 3026300.0 2479700.0 2178610.0 2198040.0 1948260.0 3109500.0 3181700.0 2979300.0 5291300.0 2887300.0 False True 3010006.7370535373 2562235.315489695 2485339.351182412 2476311.63862988 2196359.362758268 2894547.5839756653 3027789.015725675 3201630.494578859 3987330.0147874374 2703030.042058104 1.1135676223419622 0.9479122598055895 0.9194641985148114 0.9161243493780781 0.81255455121984 1.0708529091196257 1.1201462686742087 1.1844598264772215 1.475133443856014 1.0 21.36614611570932 2.1698682369617748 1.799970411701953 1.2360024153946856 0.9417955430798439 0.4562458478879017 0.13027447222010607 0.2965312143794615 1.8851622759456108 0.06838879907888896 0.04035099771890647 147.8659701248298 -2.1698682369617748 -0.29420687231484166 WLPEEDFR ddPTM_BT-474_Trastuzumab_2h_R1 4 WLPEEDFR 8 0 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 0 ;;; 135.6 0.0019237 562975000.0 876590.0 1152160.0 1016460.0 1103590.0 1018430.0 1061200.0 1045560.0 939600.0 1186360.0 1020700.0 False True 871870.5368383041 1190508.9491045722 1159568.732771299 1243304.3808463693 1148121.0237924603 987841.7417961004 994982.2683729252 1009717.7231921235 893997.4744095445 955558.0521347658 0.9124202709510956 1.245878203260298 1.2134989916947096 1.3011290921245062 1.2015188624359336 1.0337851683518455 1.0412577929201514 1.0566785774410694 0.9355763079096118 1.0 19.865983997019814 2.717924677993781 7.116274679397992 1.022106241467661 1.1880882774510466 0.3838767768837328 0.10128863166382758 0.19423589767387725 46.781482793727704 0.032396859397383286 0.031309217274211376 522.305594900708 -2.717924677993781 0.16598203598338568 WLPLGLGLNHLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 WLPLGLGLNHLGK 13 0 Q13200;Q13200-3;Q13200-2;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 ; 199.08 1.2074e-07 609310000.0 879010.0 958620.0 940740.0 868430.0 799920.0 890250.0 989440.0 849160.0 1200320.0 902480.0 False True 874277.5078271924 990527.0872019728 1073188.0149413357 978373.1489578661 901785.0705027003 828709.1129230846 941577.0071721433 912528.6311471097 904517.2194639611 844882.9537479999 1.0347912736892073 1.1723837992089656 1.2702209343679474 1.157998447734906 1.0673491120897587 0.9808567083130674 1.1144466851830745 1.0800651464194249 1.0705828723983797 1.0 19.68839196524765 3.241297774441352 5.326498079582028 1.0582215938563133 1.16868227104043 0.39300532423551093 0.06438769890252162 0.18154618042221723 15.431666371129145 0.01889011862361586 0.024311155227884865 1743.001554518621 -3.241297774441352 0.11046067718411678 WLPSS(ph)PSGVAK ddPTM_BT-474_Trastuzumab_2h_R1 3 WLPSSPSGVAK 11 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 WLPS(0.174)S(0.718)PS(0.109)GVAK;WLPS(0.013)S(0.981)PS(0.006)GVAK;WLPS(0.001)S(0.794)PS(0.205)GVAK 148.78 3.6364e-05 1441510000.0 5699390.0 5971700.0 5072140.0 5085320.0 4905980.0 6170300.0 5902300.0 5333710.0 7498600.0 5926200.0 True False 5668705.117501764 6170464.424531124 5786253.224168791 5729120.990590392 5530727.472978354 5743761.684323856 5616783.200024404 5731738.5242305985 5650670.506092091 5547984.842324922 1.0217593015496151 1.1121992218611303 1.0429468336009406 1.0326489984045384 0.9968894346619491 1.0352879194091114 1.0124006030396167 1.0331207973936485 1.0185086417294784 1.0 22.403532415397272 3.8593041010424343 3.1153021476234946 1.0197298523377467 1.0683514494046968 0.3888749629437349 0.024059130362174087 0.22540781111838873 4.139222636154037 0.005849408726397207 0.011781187140409858 7232.760776400062 -3.8593041010424343 0.04862159706695013 WLPSSPS(ph)GVAK ddPTM_BT-474_Trastuzumab_2h_R1 1 WLPSSPSGVAK 11 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 WLPS(0.003)S(0.261)PS(0.736)GVAK 132.86 0.00018218 716910000.0 1254300.0 1304800.0 1198000.0 1225500.0 1121400.0 1402500.0 1349400.0 1112300.0 1666300.0 1321800.0 True False 1247546.9881658307 1348229.4792317436 1366667.9867973323 1380648.1743466554 1264203.6429414542 1305548.4761298827 1284124.366791409 1195305.4741449556 1255662.6922760599 1237441.5923500846 1.0081663618535357 1.0895297907929993 1.1044302981620553 1.11572795264187 1.021626920217337 1.055038463391596 1.0377252346534327 0.9659490044090839 1.0147248161356617 1.0 20.238929000443285 2.2738948278826148 1.2535892824791313 0.99008838770469 1.0761521150296693 0.46370017552078135 0.034056780766817736 0.3760735778428267 1.1532842848892528 0.021619604280928514 0.012796993831401423 187.8861761980814 -2.2738948278826148 0.08606372732497936 WLPYEAGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 WLPYEAGQR 9 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 76.47800000000002 0.08216699999999999 297480000.0 361610.0 386190.0 420670.0 480020.0 446290.0 521340.0 525500.0 462390.0 593020.0 516810.0 False True 359663.13193864765 399044.1006932148 479896.6794708127 540790.4827824403 503122.3861319258 485300.99290235434 500079.5573950539 496895.8897688441 446878.1670608827 483826.7433366988 0.7433717480316199 0.8247665227044237 0.9918771256033049 1.1177358222344067 1.039881306812755 1.0030470609282331 1.0335922192854987 1.0270120381151615 0.9236326292734437 1.0 18.884130990370807 4.2977785302967755 3.0305847838969817 1.0250593203814158 0.7577768817739832 0.8128777454428002 0.04559012980193827 0.09653540596322334 1.7373356340897352 0.011697513892055145 0.038841597304431964 19850.8236081931 -4.2977785302967755 -0.2672824386074326 WLSTSIPEAQWHSSLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 WLSTSIPEAQWHSSLAR 17 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 252.37 5.511e-27 5564500000.0 1139410.0 2720700.0 2999300.0 3592900.0 3265400.0 3068400.0 3219100.0 2700960.0 2300350.0 3478200.0 False True 1133275.543160353 2811256.8548021205 3421575.369617056 4047760.77161166 3681229.3344578478 2856288.730236667 3063379.8348437985 2902519.350396978 1733459.5656107715 3256218.298163165 0.3480342653315457 0.8633502417168875 1.0507819366862379 1.2430864275576992 1.130522894160515 0.8771797430927472 0.9407783982332675 0.8913773846287553 0.532353609888077 1.0 21.634765991016916 -3.045861994134444 10.15322168567525 0.9992431466925121 0.9062349212110156 0.0 0.254741489810791 0.0 0.0 0.0 0.0569985108133893 0.0008997834605198036 3.045861994134444 -0.09300822548149656 WLVFDEADR ddPTM_BT-474_Trastuzumab_2h_R1 3 WLVFDEADR 9 0 F8WAJ0;Q9H8H2-4;Q9H8H2-2;Q9H8H2 F8WAJ0 DDX31 Probable ATP-dependent RNA helicase DDX31 0 ;; 136.75 0.00042785 120632000.0 173872.0 212634.0 210662.0 199551.0 192173.0 207134.0 198906.0 195130.0 245444.0 209207.0 False True 172935.89247099517 219711.39415003266 240321.37849307118 224814.13613957498 216645.09245138938 192815.3141209887 189284.15688529128 209691.59145006284 184957.614981099 195855.23014887585 0.8829781688216395 1.1218050903364847 1.2270357973611181 1.1478587320271536 1.1061491300830235 0.984478760023021 0.966449334753074 1.070645860673057 0.944358824834582 1.0 17.579428129195204 2.745506832967822 22.719189591977447 1.0013381645156743 1.108565598313463 0.2547367798353317 0.08729456730380729 225.61128958039242 737911.9289956907 0.02770484364451517 0.028743674390861958 556.5533907164955 -2.745506832967822 0.10722743379778876 WMDEAQALDTADR ddPTM_BT-474_Trastuzumab_2h_R1 2 WMDEAQALDTADR 13 0 A0A0B4J1W3;Q9BXJ9;Q9BXJ9-4 A0A0B4J1W3 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit 0 ; 235.49 2.5394e-16 817630000.0 470400.0 489390.0 472510.0 435660.0 481840.0 512270.0 507220.0 423090.0 542170.0 507420.0 False True 467867.4186663531 505679.0503074972 539035.3008694553 490814.5113307742 543199.4679105675 476857.98065387097 482683.83083143545 454663.12420748774 408559.4682057914 475036.0211758819 0.9849093496282998 1.0645067484688067 1.1347251089194301 1.033215355155247 1.1434911116128774 1.0038354133092455 1.0160994310212992 0.9571129428922799 0.8600599743877578 1.0 18.85767738914662 1.9962946546405533 1.5539426095421554 0.9296279985003877 1.0705028124860623 0.49294935730008527 0.056073552635655624 0.305155516095029 1.3744709056387654 0.035789222603415514 0.01723534233044624 99.15044201498 -1.9962946546405533 0.14087481398567459 WMEEQAQSLIDK ddPTM_BT-474_Trastuzumab_2h_R1 2 WMEEQAQSLIDK 12 0 A0A0A0MRR7;P09234 A0A0A0MRR7 SNRPC U1 small nuclear ribonucleoprotein C 0 ; 191.29 1.2921e-05 179441000.0 426820.0 439360.0 399310.0 415110.0 388540.0 446860.0 432060.0 430960.0 582990.0 508260.0 False True 424522.0485441603 453983.832001271 455529.3771352601 467662.883437813 438018.2659429937 415969.61999529356 411159.6071705178 463120.4235705388 439319.9261657679 475822.4116567217 0.8921859041192628 0.9541035076943665 0.9573516630904265 0.9828517362381086 0.920549884184519 0.8742119114292404 0.8641030710153804 0.9733051916534216 0.9232854850954598 1.0 18.860063700013516 0.4266390291634547 1.2501491430489011 0.9998585159573554 0.9275280944026444 0.2406224849077021 0.038717834106555896 4.317128571164075 7.8358232801362036 0.03956827324313735 0.011833008384388615 2.6707856194890813 -0.4266390291634547 -0.07233042155471103 WMGGAELSDDGR ddPTM_BT-474_Trastuzumab_2h_R1 4 WMGGAELSDDGR 12 0 P48147;A0A499FJL1 P48147 PREP Prolyl endopeptidase 0 ;;; 232.41 2.6528e-12 1301510000.0 830710.0 1034450.0 898600.0 979140.0 956200.0 977500.0 951480.0 849360.0 1027680.0 953140.0 False True 826237.5496605567 1068881.0429117694 1025115.0692287815 1103099.023606513 1077966.4021585686 909927.7257874932 905453.2773934276 912743.556162688 774422.0342064813 892309.789175792 0.9259536986854477 1.197881112454311 1.1488331537589194 1.236228759325192 1.2080629566490173 1.01974419290858 1.014729736664411 1.0228998574651638 0.8678847229971541 1.0 19.767185141663767 2.6026166765492404 4.79137869603265 0.9878618393018145 1.1513754290457823 0.44065699966677263 0.08950573479255153 0.22036141150849278 7.666647416744657 0.02957301289946283 0.027667340547063008 400.51305478723873 -2.6026166765492404 0.1635135897439678 WMKWYGK ddPTM_BT-474_Trastuzumab_2h_R1 1 WMKWYGK 7 1 Q8TEK3;Q8TEK3-1;C9JH95 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific 0 74.639 0.02742 797980000.0 940610.0 862690.0 697300.0 677470.0 693560.0 846800.0 740010.0 737920.0 1029700.0 799980.0 False True 935545.8602715962 891404.1151428827 795473.7789597479 763237.6325374353 781880.754947812 788262.7091527877 704212.8891872765 792987.3374818345 775944.2322730945 748924.5915026643 1.249185660193758 1.1902454870046975 1.062154705540762 1.0191114582124388 1.044004648557505 1.052526139609322 0.9402987926652576 1.058834689739272 1.036077919028159 1.0 19.514460936856462 4.284873357957178 2.147658428986432 1.022920476988244 1.2502439522440976 0.8595295770781813 0.03201589342982957 0.11283509925602145 0.9732452675284768 0.008305666626477358 0.034606785707689595 19269.629210056362 -4.284873357957178 0.2273234752558535 WNDNCPSWNTIDPEER ddPTM_BT-474_Trastuzumab_2h_R1 1 WNDNCPSWNTIDPEER 16 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 141.32 3.7598e-06 116820000.0 45950.0 70430.0 65965.0 69176.0 56684.0 68081.0 68759.0 51215.0 67675.0 64922.0 False True 45702.61030552492 72774.21997416591 75252.29862194142 77933.67450722496 63902.3714076096 63374.720715435564 65432.864485112324 55036.92336450044 50997.40304854001 60778.62237747943 0.7519520600792575 1.1973654078926814 1.2381376161270972 1.2822547050046675 1.05139552210857 1.042714004306193 1.0765769595553956 0.9055309451188469 0.8390680975262825 1.0 15.891276354315828 1.8995906896192234 1.8097263321411825 0.898923424683187 1.1163666199195788 0.2287029370746947 0.14355572588125762 0.4655828964680569 2.8462289915111376 0.09463933326501316 0.04378455681460683 79.35799552907791 -1.8995906896192234 0.21744319523639177 WNEEFYFR ddPTM_BT-474_Trastuzumab_2h_R1 1 WNEEFYFR 8 0 Q96PU5-7;Q96PU5;Q96PU5-2;Q96PU5-3;Q96PU5-5;Q96PU5-6 Q96PU5-7;Q96PU5-5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 0 111.95 0.011649 0.0 73329.0 83319.0 87240.0 76695.0 74252.0 92409.0 79208.0 74464.0 97750.0 78948.0 False True 72934.20481161776 86092.222547601 99522.63369632642 86404.57913628448 83707.5520739155 86020.98333738775 75376.40643605591 80020.88180053039 73660.82228289313 73909.47104921663 0.9868045837190549 1.1648334283203274 1.3465477736953884 1.169059633490643 1.1325686801110277 1.163869557124905 1.0198477321784978 1.0826877890553992 0.9966357658525532 1.0 16.173471628362428 2.244455178998689 24.13449699101119 1.0367255063759082 1.1683664190240717 0.37780431797812497 0.08448745538253326 105.13478097204266 430461.9616963587 0.03096956350102865 0.025249087395193725 175.57196872565007 -2.244455178998689 0.13164091264816347 WNEEILFR ddPTM_BT-474_Trastuzumab_2h_R1 3 WNEEILFR 8 0 P46934-4 P46934-4 NEDD4 E3 ubiquitin-protein ligase NEDD4 0 ;; 91.853 0.028365 140518000.0 168220.0 203657.0 185926.0 195913.0 207780.0 223711.0 187103.0 174513.0 269716.0 213106.0 False True 167314.32221099903 210435.6001317435 212102.76470223744 220715.5657125876 234239.55139145293 208246.3851290495 178052.11308712966 187536.04621905842 203248.10580923563 199505.39263077403 0.8386456125556905 1.0547865266038101 1.0631430153608803 1.106313783312451 1.174101352863988 1.0438133144323196 0.8924676708696887 0.9400048978432008 1.0187599599645323 1.0 17.60606821745851 2.357538017952773 7.6954510848442785 0.9539106931043199 1.057457687422604 0.1781294511753495 0.08616169221059665 0.3462682730759572 21.90898114787903 0.03093088843382207 0.0258148999630149 227.7917641063338 -2.357538017952773 0.10354699431828418 WNGHTDMIDQDGLYEK ddPTM_BT-474_Trastuzumab_2h_R1 2 WNGHTDMIDQDGLYEK 16 0 Q9UHG3;Q9UHG3-2 Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 0 ; 199.05 3.9124e-11 970000000.0 811060.0 838270.0 951570.0 749620.0 1045600.0 1168330.0 1037380.0 887470.0 1422630.0 1011450.0 False True 806693.343077237 866171.3102050837 1085542.7848052892 844521.8151397307 1178750.962243253 1087566.097052993 987197.9662235604 953697.5178813488 1072041.898765342 946898.3950540896 0.8519323163824313 0.9147457791979946 1.1464195002076014 0.8918821908991504 1.244854747246582 1.1485562788295445 1.042559551668866 1.0071804143536127 1.1321614909951387 1.0 19.852850103070484 4.374111625626113 5.306287756866855 1.0732045489058468 0.8668143970879516 0.40985872904846066 0.09383779673389166 0.1813207697740043 7.638668718718866 0.022580716647122325 0.06520069323590046 23665.278820738873 -4.374111625626113 -0.20639015181789522 WNQDTMEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 WNQDTMEQK 9 0 Q15637-6;Q15637-2;Q15637-4;Q15637-3;Q15637;F8WEV5;Q15637-5 Q15637-6;Q15637-5 SF1 Splicing factor 1 0 144.77 0.00022976 169220000.0 85196.0 89951.0 97401.0 75249.0 82411.0 80281.0 93980.0 99463.0 123450.0 86828.0 False True 84737.31420216548 92944.96465847222 111114.21417533135 84775.5156845462 92905.55236173373 74731.36343114644 89433.82836153597 106885.43412288028 93027.40164524969 81286.56270280918 1.0424516843204767 1.1434234831442827 1.3669444306751495 1.04292164492787 1.142938626909402 0.919356913938788 1.1002289356054322 1.3149213174834666 1.1444376358410682 1.0 16.310729262916748 -1.243373670122769 5.285567478022587 0.9999855119155944 1.1446140504236262 0.09361207453967813 0.12325945365397456 2.178763395083279e-05 3.119049397921192e-06 0.12356797249611162 0.02912233356330462 0.057098714377949465 1.243373670122769 0.1446285385080318 WNQQQLDDLYLIAICHR ddPTM_BT-474_Trastuzumab_2h_R1 2 WNQQQLDDLYLIAICHR 17 0 Q96C86;A0A3B3ITF0 Q96C86 DCPS m7GpppX diphosphatase 0 ; 238.81 2.9160000000000004e-20 435430000.0 349000.0 467040.0 407350.0 368430.0 386830.0 450300.0 424330.0 394710.0 519060.0 428570.0 False True 347121.0227775449 482585.14406835806 464701.3392503281 415073.20022402104 436090.50757895765 419171.8208921826 403803.53680198477 424165.2644967683 391144.61804765713 401218.29568276333 0.8651674824221071 1.2027994467379177 1.158225694716972 1.0345320856260567 1.0869158068598328 1.044747523736093 1.0064434776455597 1.057193226383048 0.9748922774870883 1.0 18.614027869242765 2.5374049431340326 2.858180476640572 1.018458851840339 1.0802045137892518 0.08719425515514378 0.08570286948181574 0.662606177098311 10.73452644543356 0.030220504673084955 0.026855313850237473 344.6711578920109 -2.5374049431340326 0.06174566194891273 WNRPGDR ddPTM_BT-474_Trastuzumab_2h_R1 1 WNRPGDR 7 1 F8VX55;Q12800-2;Q12800-3;Q12800-4;Q12800;F8VWL0;C9JWL3;Q9NZI7-4;Q9NZI7 F8VX55 TFCP2;UBP1 Alpha-globin transcription factor CP2;Upstream-binding protein 1 0 69.905 0.053328 184420000.0 257040.0 340650.0 366110.0 334940.0 375580.0 316180.0 355200.0 315720.0 432960.0 385300.0 False True 255656.1251998284 351988.32932272676 417655.10571483383 377343.3696578283 423407.8867629314 294323.22080766223 338017.6190042303 339280.629593675 326262.80936676584 360709.82412807376 0.7087584204777718 0.9758212994990391 1.1578700600251493 1.0461133698533496 1.1738185611839507 0.8159556549897563 0.9370901383717612 0.9405915971759337 0.9045021442247241 1.0 18.460479190680797 2.7195604414012284 24.767611229871978 0.9195296163962252 1.0203861300091313 0.1169409520305481 0.12664278995128336 1600.177144485913 2085902.89703204 0.04196157152183967 0.039619609866135004 524.2765602707218 -2.7195604414012284 0.10085651361290604 WNS(ph)FQLSHQPR ddPTM_BT-474_Trastuzumab_2h_R1 2 WNSFQLSHQPR 11 0 H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8 H3BRG5;Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 1 WNS(1)FQLSHQPR;WNS(1)FQLSHQPR 89.506 0.0078466 556730000.0 365220.0 504430.0 528390.0 476310.0 377790.0 442740.0 574900.0 388650.0 797740.0 510640.0 True False 363253.6960997565 521219.6476156264 602782.7191517871 536610.7971628349 425899.3171632358 412134.4258978566 547089.8906687272 417653.0365247121 601147.6661683386 478050.5180191009 0.759864663686532 1.090302442878643 1.2609184519860774 1.1224980978713095 0.8909085987983777 0.8621147982552535 1.1444185709403787 0.8736587887308271 1.2574982005234838 1.0 18.86680355758967 3.2666549812696193 24.99731691522445 0.993122005483794 1.0751408294026032 0.0179937949486777 0.16465104808821138 739.4310467624036 657913.292051294 0.04534323066045291 0.06138234126142154 1847.8000786969244 -3.2666549812696193 0.08201882391880921 WNS(ph)NDFIDAFASPVEAEGTPEPGAEAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 WNSNDFIDAFASPVEAEGTPEPGAEAAK 28 0 O00562-2;O00562 O00562-2 PITPNM1 Membrane-associated phosphatidylinositol transfer protein 1 1 WNS(1)NDFIDAFASPVEAEGTPEPGAEAAK 132.28 1.2444e-05 28855000.0 50491.0 36461.0 35051.0 38073.0 30154.0 52870.0 47073.0 45669.0 71152.0 48763.0 True False 50219.16206607744 37674.58234386007 39985.876131246434 42893.037896287366 33993.93316323938 49215.2213425931 44795.899153677165 49077.052682483074 53617.54298795306 45650.90359189533 1.1000693987356942 0.8252757202937087 0.8759054692259226 0.9395879275410972 0.7446497328318934 1.0780777042785756 0.9812708101933395 1.075051068456748 1.1745121951424438 1.0 15.478355796049085 2.7008444559500457 24.94462471001657 1.0603483272985093 0.8942907294715581 0.41540165424780284 0.09764696393722289 525.6322935719442 347640.92955238285 0.03041937653410917 0.028680332711834896 502.1627060254622 -2.7008444559500457 -0.16605759782695118 WNSPAEEGSSDCEVFSK ddPTM_BT-474_Trastuzumab_2h_R1 2 WNSPAEEGSSDCEVFSK 17 0 P34932;A0A087WYC1;A0A087WTS8 P34932 HSPA4 Heat shock 70 kDa protein 4 0 ; 128.73 0.00035327 0.0 134255.0 126866.0 134935.0 133486.0 131588.0 159144.0 148477.0 114666.0 160411.0 140298.0 False True 133532.18599713274 131088.65811788337 153932.6751239546 150385.3139133722 148344.95181681833 148142.74986467994 141294.60027277892 123222.95918214983 120879.85844727543 131344.06152483914 1.0166594853767317 0.9980554628508463 1.1719804712666329 1.1449723129273879 1.1294378298844068 1.1278983468671244 1.075759334928576 0.9381692461127868 0.9203298348164392 1.0 17.002991447635104 1.7925510701896468 4.273478296055787 0.9466098395218193 1.1003811325438004 0.5859547709324074 0.05479544616741707 0.15185066311868783 5.14063177325057 0.029912314736438062 0.015975542419833844 62.0227574070427 -1.7925510701896468 0.15377129302198111 WNTEDK ddPTM_BT-474_Trastuzumab_2h_R1 8 WNTEDK 6 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 ;;;;;;; 163.34 0.018421 11804450000.0 10685020.0 8996430.0 7824000.0 7192050.0 7449240.0 10822790.0 10356860.0 8895780.0 12630040.0 10359030.0 False True 10627493.039537333 9295870.734093232 8925551.192572892 8102562.792582495 8397856.558895303 10074636.001407279 9855859.114752673 9559628.275455546 9517535.875865277 9697907.836588213 1.0958542005773644 0.9585439344991321 0.9203584260616111 0.8354959573871378 0.8659451812082516 1.0388463337832257 1.016287149849841 0.9857412997253936 0.9814009409284722 1.0 23.209242112568734 2.724163569888415 24.867645185437546 1.0030895072617274 0.9301661864159672 0.21326336383086986 0.06608663199632973 1257.5239116167409 2172085.5172652164 0.022916805876773944 0.021705632645294 529.8629705061426 -2.724163569888415 -0.07292332084576025 WNTEDKVSHVSTGGGASLELLEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 WNTEDKVSHVSTGGGASLELLEGK 24 1 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 126.31 5.5657e-05 571900000.0 389820.0 575370.0 605910.0 629360.0 599640.0 915440.0 970310.0 773660.0 1101000.0 952920.0 False True 387721.2524330732 594520.8426314897 691216.8613358685 709036.911470266 676000.5996552651 852157.787513967 923372.3983558402 831394.4377658779 829673.3026441465 892103.8297641427 0.4346144916064088 0.666425614144792 0.7748166057291948 0.7947919152613921 0.7577600018082966 0.9552226535550948 1.035050369192972 0.931948064818514 0.9300187657119443 1.0 19.766852106071596 4.995674657743938 0.44309973099465677 0.9859198074073472 9.26115185757963e-16 0.885759974387023 0.05850089422845454 2.116040042769772 0.2738330423535279 0.04359949753051527 1.153077374875956 99008.99626673375 -4.995674657743938 -0.9859198074073463 down WNTTLYEGTWR ddPTM_BT-474_Trastuzumab_2h_R1 3 WNTTLYEGTWR 11 0 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;; 242.97 1.9821e-15 3790180000.0 1260620.0 1503100.0 1584710.0 1567830.0 1506060.0 1547340.0 1538460.0 1427080.0 1659250.0 1430410.0 False True 1253832.961988048 1553129.7748568638 1807823.393453755 1766317.1172467694 1697847.813883011 1440376.0278465657 1464038.8123120735 1533575.9561654087 1250350.0703109 1339120.0091643864 0.9363111247739792 1.1598137315758725 1.3500084989259777 1.3190133110989468 1.267883238442887 1.0756138493855851 1.093284248082916 1.1452117402997832 0.9337102438571737 1.0 20.352853827124573 2.7220008594779435 20.745524613818137 1.0692451738596855 1.2182180377415355 0.29305957727750986 0.11934470776331907 128.1872980241244 160587.0054222709 0.04068188091487183 0.038539177964429065 527.2309048228757 -2.7220008594779435 0.14897286388184994 WNVEDVYEFIR ddPTM_BT-474_Trastuzumab_2h_R1 1 WNVEDVYEFIR 11 0 B3KPJ4;A0A0A0MSI2;Q8IXK0-3;Q8IXK0-2;Q8IXK0-4;Q8IXK0;Q8IXK0-5 B3KPJ4 PHC2 Polyhomeotic-like protein 2 0 89.54799999999999 0.028268 74260000.0 111880.0 134990.0 152920.0 135710.0 126150.0 137620.0 138080.0 118680.0 166880.0 137050.0 False True 111277.65051103653 139483.06054682162 174449.80679553258 152890.87208534032 142214.45475036983 128106.65332263397 131400.54288317618 127536.50424482884 125754.66007743438 128303.35166559182 0.8673011972521898 1.0871349714259098 1.3596667938201357 1.1916358388191846 1.108423536128937 0.9984669274776974 1.0241395971140086 0.9940231692250591 0.9801354247175061 1.0 16.969199332847023 2.813172858940579 3.8285960194029522 1.0000588955254426 1.1410565137728526 0.22379940265306608 0.11376241513910769 0.3594517837871627 10.201379308375461 0.03838056829445344 0.04035682166351644 650.38850803981 -2.813172858940579 0.14099761824740997 WNYRDEADVLEVDQGFDDHNLPCDVIWLDIEHADGK ddPTM_BT-474_Trastuzumab_2h_R1 1 WNYRDEADVLEVDQGFDDHNLPCDVIWLDIEHADGK 36 1 Q14697;F5H6X6;Q14697-2;E9PKU7 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 267.66 6.556499999999998e-63 71130000.0 65296.0 69865.0 71405.0 68074.0 63660.0 89856.0 90365.0 72418.0 101780.0 81004.0 False True 64944.453591067606 72190.41429071562 81458.20333661379 76692.16142021549 71766.72365761828 83644.46621827211 85993.6997221771 77822.19889115293 76697.68278212637 75834.25536898652 0.8563999643046215 0.951949932645332 1.0741610495186225 1.0113129092789883 0.9463628713491434 1.1029905391868553 1.1339690658760715 1.0262143211203656 1.0113857175617889 1.0 16.210562060233727 4.516022100744474 2.935095007500302 1.041471346626074 0.8573316967854897 0.5503953437953714 0.05171725654156106 0.21780946559847955 3.3752141830093727 0.013556159921378423 0.07281886778984777 32811.198992839694 -4.516022100744474 -0.1841396498405844 WPEVDDDSIEDLGEVKK ddPTM_BT-474_Trastuzumab_2h_R1 6 WPEVDDDSIEDLGEVKK 17 1 O43583 O43583 DENR Density-regulated protein 0 ;;;;; 219.95 6.6742e-15 3765020000.0 3848910.0 3231270.0 2719080.0 2464800.0 2391620.0 3763070.0 3854130.0 3586250.0 6154050.0 3691570.0 False True 3828187.896214102 3338820.8686060407 3101902.8293329636 2776843.4272783627 2696178.630757663 3502937.8282139595 3667691.00769362 3853874.1856085057 4637466.837545151 3455970.8420879184 1.1077026025778935 0.966102152236012 0.8975489004585915 0.8034915669603098 0.7801508617846936 1.0135900990697206 1.061262138854676 1.1151350406880733 1.3418709385706027 1.0 21.720659614906396 2.130329883634722 1.8438194533771206 1.163428777718161 0.9095066491770706 0.440983425766586 0.11667299122653547 0.32189651438970995 2.1230787659273807 0.0660041383942052 0.03774969819867311 134.99879240051501 -2.130329883634722 -0.2539221285410903 WPFSGKT(ph)SPPCS(ph)PANLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 WPFS(0.067)GKT(0.494)S(0.44)PPCS(0.994)PANLS(0.005)R 74.584 0.041949 317380000.0 237800.0 319100.0 237540.0 304680.0 297480.0 295240.0 304390.0 270890.0 507410.0 344880.0 True False 236519.71122206395 329721.0505999767 270983.5672653071 343252.4567604557 335362.3146978987 274830.753720204 289665.49281727977 291105.18735154823 382365.60444565467 322869.4631333767 0.7325552219361116 1.0212209212977494 0.8392976054021076 1.0631307570225643 1.0386931964493689 0.8512132149415196 0.8971597685520962 0.9016188292520353 1.1842730518237343 1.0 18.300591472312377 4.747514108771421 24.39344213084835 0.9641748097824722 0.732555052539719 0.3326454208026026 0.10251103351578345 1019.6832313435243 2778002.319093378 0.023879042708638148 0.2853021563094011 55913.16915892684 -4.747514108771421 -0.2316197572427532 WPFSGKT(ph)SPPCSPANLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 WPFS(0.098)GKT(0.502)S(0.4)PPCSPANLSR 62.684 0.080046 976960000.0 510210.0 664360.0 740680.0 774440.0 773580.0 740290.0 711750.0 707400.0 1114800.0 805470.0 True False 507463.0860496596 686472.8209858985 844961.3058940299 872484.0245948774 872090.8276321116 689115.4947552148 677319.9333509603 760189.7801044154 840072.4775546729 754064.2150024395 0.6729706515087948 0.9103638752883635 1.1205429048125515 1.1570420757760729 1.156520638801684 0.9138684491916719 0.8982258007678684 1.0081233998114552 1.1140595997543195 1.0 19.524327860955687 4.619595477950616 3.0166969440333857 1.0395259721626449 0.6559118050160941 0.6200739500288716 0.0891717607479883 0.21962369687035607 3.1913964152722634 0.024558653095643174 0.17131058195196974 41648.12727471019 -4.619595477950616 -0.3836141671465507 WPFSGKTS(ph)PPCSPANLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 WPFS(0.008)GKT(0.372)S(0.62)PPCSPANLSR 98.21 0.00076548 992300000.0 629110.0 849330.0 858520.0 970440.0 842650.0 795760.0 901010.0 808790.0 1249500.0 930920.0 True False 625722.9416606919 877599.4356191725 979392.1536103887 1093297.604498546 949956.4827221471 740750.9842175507 857424.7041075503 869146.0167524024 941577.467442198 871507.8885992913 0.7179773698507411 1.0069896636617617 1.1237903482256386 1.2544896251664694 1.090014783743312 0.8499647494965349 0.9838404394544542 0.9972899019299929 1.0804003954060866 1.0 19.733154197642126 4.728126633378502 4.18776797475564 1.0445273425491721 0.6947305182700607 0.491608661138484 0.09980262592122263 0.19321255183007033 7.640837358645432 0.026605444349762412 0.19963041939733472 53472.02526073179 -4.728126633378502 -0.3497968242791114 WPGS(ph)PTSR ddPTM_BT-474_Trastuzumab_2h_R1 5 WPGSPTSR 8 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 WPGS(0.983)PT(0.017)SR;WPGS(0.643)PT(0.355)S(0.002)R;WPGS(0.816)PT(0.184)SR;WPGS(0.976)PT(0.024)SR;WPGS(0.775)PT(0.223)S(0.002)R 95.311 0.010217 3872160000.0 5448640.0 6730270.0 5949990.0 6195280.0 6186630.0 5793400.0 5523000.0 4875050.0 6149100.0 5392500.0 True False 5419305.127640816 6954282.968415864 6787696.873759803 6979601.812783622 6974460.659471105 5392915.894196682 5255831.390091119 5238850.986002301 4633736.698718545 5048346.0332484795 1.0734813128793461 1.3775369046841988 1.3445387517131224 1.3825521798259994 1.3815337961259404 1.0682540100616835 1.0410996701644732 1.0377361122829443 0.9178722433447883 1.0 22.267379370956426 2.6357486748783288 4.4006730183341976 1.012710989988461 1.3208938493601425 0.7282431642312968 0.09165708180385222 0.12069152702685036 3.944230962293511 0.03036279618375765 0.02854941809310119 432.2636087799824 -2.6357486748783288 0.30818285937168155 WPSVSSLDSALESSPSLHSPADPSHLSPPAS(ph)SPR ddPTM_BT-474_Trastuzumab_2h_R1 1 WPSVSSLDSALESSPSLHSPADPSHLSPPASSPR 34 0 O15211 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 WPSVSSLDSALESSPSLHSPADPS(0.001)HLS(0.226)PPAS(0.387)S(0.387)PR 145.04 3.8637e-10 68751000.0 20302.0 30416.0 33444.0 28118.0 26088.0 32500.0 27225.0 20675.0 21174.0 31561.0 True False 20192.696287764244 31428.37817313973 38152.62449954084 31677.73591699652 29410.15216430949 30253.351496770865 25908.022740400265 22217.873485522734 15955.951417063709 29546.74995926847 0.6834151409410777 1.0636830858373651 1.291262983310718 1.072122516373737 0.9953768927158728 1.0239146958117722 0.8768484782967889 0.7519565947574971 0.5400239091967716 1.0 14.850711827193763 2.0295293036835695 2.2467018242092873 0.7368234621780839 1.0397194786582804 0.30328227606402947 0.17388643227244624 0.3410224939894149 3.25479748655105 0.09342386865910035 0.051696873610827226 107.03586020919931 -2.0295293036835695 0.3028960164801965 WPSVSSLDSALESSPSLHSPADPSHLSPPAS(ph)SPRPSR ddPTM_BT-474_Trastuzumab_2h_R1 2 WPSVSSLDSALESSPSLHSPADPSHLSPPASSPRPSR 37 1 O15211 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 WPSVSSLDSALESSPSLHSPADPS(0.001)HLS(0.198)PPAS(0.492)S(0.308)PRPSR;WPSVSSLDSALESSPSLHSPADPS(0.001)HLS(0.121)PPAS(0.439)S(0.439)PRPS(0.001)R 260.88 1.3835999999999999e-62 262200000.0 30926.0 63404.0 75177.0 84057.0 81582.0 79001.0 78499.0 44822.0 57379.0 76116.0 True False 30759.497852201614 65514.36381147263 85761.26814980205 94698.60758144173 91970.98412560168 73539.84681835055 74701.7034746989 48166.845241504234 43238.714289208416 71258.2117138139 0.43166250053730537 0.9193938808707461 1.2035282122183348 1.3289500999796173 1.290672077135111 1.032019258548055 1.0483241394650022 0.6759479936845897 0.6067892141731406 1.0 16.12076865780055 1.7635321489922808 7.225548235124003 0.7333045244447698 1.059662152806047 0.19004865999320752 0.25537699885285564 0.24292537015535887 37.05594095429622 0.12839678903996526 0.0700227523555042 58.013911618982156 -1.7635321489922808 0.32635762836127724 WQDEDGKK ddPTM_BT-474_Trastuzumab_2h_R1 4 WQDEDGKK 8 1 P39023;H7C422;G5E9G0;H7C3M2;B5MCW2 P39023 RPL3 60S ribosomal protein L3 0 ;;; 99.653 0.01068 6444820000.0 7898960.0 5917060.0 5063470.0 4833860.0 5465910.0 7347380.0 7010530.0 7313280.0 11749340.0 7583950.0 False True 7856432.877016951 6114005.765161703 5776362.563529777 5445826.180373165 6161961.239513216 6839472.914472126 6671403.881074682 7859034.089683375 8853872.590089897 7099935.818053743 1.1065498447238895 0.8611353569725217 0.8135795465702128 0.7670247055650135 0.8678897101921059 0.9633147523785623 0.9396428435466433 1.1069162160169665 1.2470355813043037 1.0 22.75937455233669 1.8481525585497698 2.0060341662467773 1.140462584786573 0.8823292960320854 0.4770768388162381 0.10325354566161565 0.2565934204915564 1.950564767380738 0.06677375690409254 0.030509326533928183 70.49406563572609 -1.8481525585497698 -0.2581332887544876 WQDIQNDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 WQDIQNDPR 9 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 ; 87.258 0.031599 1115430000.0 1320890.0 1560660.0 1511370.0 1625590.0 1481080.0 1586010.0 1578090.0 1342310.0 1572570.0 1626300.0 False True 1313778.4750046763 1612605.6246611073 1724157.758936463 1831389.5273245012 1669686.7589510693 1476372.8617659574 1501751.7578107715 1442479.988312071 1185031.1948584067 1522508.1416545184 0.8629040719460361 1.059177012287553 1.1324456741904911 1.2028766725242728 1.0966685256189244 0.9696978435606751 0.9863669800667266 0.9474366335699982 0.7783414501617222 1.0 20.538018512328158 2.2117496536307355 1.4599168510683955 0.9049256779206465 1.0769626279605529 0.321117482985399 0.09860275121714987 0.4872972314597971 2.0247953106830225 0.06062350672630227 0.03497365654190798 162.8357105659417 -2.2117496536307355 0.17203695003990638 WQGGER ddPTM_BT-474_Trastuzumab_2h_R1 2 WQGGER 6 0 Q15424;Q15424-3;Q15424-4;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ; 129.2 0.037913 998440000.0 794860.0 983770.0 1041800.0 1047920.0 1033340.0 849280.0 983640.0 875110.0 944250.0 951060.0 False True 790580.5620772488 1016514.1897484779 1188476.3845120696 1180586.5645543404 1164929.7239139685 790571.2725900783 936057.5753302957 940415.1519185386 711552.2398017584 890362.5365565683 0.8879310725884523 1.1416857156634135 1.3348229914394663 1.3259616348192262 1.308376842111164 0.8879206392123958 1.051321834530966 1.0562159943920666 0.7991713606388364 1.0 19.764033364667085 2.737458176307761 24.998784436648556 0.9778562332635249 1.2110447295639826 0.4170781112491947 0.14115881653025789 109.29963481125517 2478430.0588529296 0.04697191243912093 0.046630994834002154 546.3339339644425 -2.737458176307761 0.23318849630045768 WQHWHEECER ddPTM_BT-474_Trastuzumab_2h_R1 3 WQHWHEECER 10 0 J3QLV0;J3QLD4;J3QL54;J3KT10;Q9BW27-2;Q9BW27-3;Q9BW27 J3QLV0 NUP85 Nuclear pore complex protein Nup85 0 ;; 174.77 1.738e-06 316825000.0 145696.0 192233.0 196067.0 200794.0 149530.0 159586.0 156153.0 46478.6 180466.0 118543.0 False True 144911.5889243475 198631.35919769743 223671.5293550854 226214.49981212761 168571.75916625265 148554.195445036 148599.28282761137 49947.06914554858 135992.57242050726 110977.48425023176 1.3057746794620178 1.7898347627868723 2.0154676497329076 2.038381941530227 1.518972612373853 1.3385976123776275 1.339003887424138 0.4500648891348812 1.2254068772533313 1.0 16.759907478439985 2.3843319445623767 1.4725469258588795 0.856732409202338 1.7834383781935128 0.6016705290541062 0.28656796047721783 0.2498350158879082 1.0915800922638705 0.15219230786535423 0.10468643316767752 242.28802206869065 -2.3843319445623767 0.9267059689911749 WQIGEQEFEALMR ddPTM_BT-474_Trastuzumab_2h_R1 2 WQIGEQEFEALMR 13 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;P35611-5;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 0 ; 174.9 4.462e-05 142519000.0 98599.0 104570.0 91104.0 98122.0 96257.0 104157.0 125024.0 115255.0 134153.0 147625.0 False True 98068.15393937884 108050.54923610011 103930.65130983632 110544.23513932464 108514.7583900622 96956.87174920506 118976.11148193946 123855.9133530313 101092.79070810176 138203.44611187896 0.7095926816469565 0.7818223949975215 0.7520120100746402 0.7998659819946635 0.7851812776232578 0.7015517664495585 0.8608765904840425 0.8961854196657802 0.7314780749118568 1.0 17.07643406430577 -4.99999999973176 0.12492108179087462 1.7186225541675781 0.6891240162087057 0.5907392306144482 0.05662170906672055 103.39607657469388 0.8269198578589935 18.572505068159 0.48919380668078777 1.0000000006176446e-05 4.99999999973176 -1.0294985379588724 WQPDTEEEYEDSSGNVVNKK ddPTM_BT-474_Trastuzumab_2h_R1 4 WQPDTEEEYEDSSGNVVNKK 20 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ;;; 316.44 2.962599999999999e-66 3651950000.0 1419230.0 1229690.0 1194390.0 1086730.0 1141650.0 1609980.0 1533460.0 1438490.0 2147590.0 1595300.0 False True 1411589.0233712776 1270619.4882866961 1362549.730176013 1224309.9065750625 1287032.3604103029 1498685.8720852684 1459280.6814139292 1545837.4283042138 1618345.2207316458 1493486.5881949551 0.9451635083495059 0.8507739529300904 0.9123280657128673 0.8197662545164047 0.8617635876903487 1.0034813060468104 0.9770966093358979 1.0350527688183195 1.0836021116785497 1.0 20.51025285134415 2.679390365339661 4.429004344404464 1.0217363661980605 0.8749120526888046 0.7504961710136868 0.040947353670429405 0.10890155287720774 4.423426622911237 0.013586223092537323 0.012959029974782274 477.9586935274819 -2.679390365339661 -0.14682431350925595 WQQHQGLLPPGMTIDLFR ddPTM_BT-474_Trastuzumab_2h_R1 1 WQQHQGLLPPGMTIDLFR 18 0 Q2TAY7;Q2TAY7-2 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed 0 74.744 0.018042 307740000.0 302250.0 326780.0 359220.0 342000.0 307720.0 361940.0 339880.0 298870.0 430810.0 330830.0 False True 300622.7195831319 337656.6747573187 409795.0536037869 385297.16493395035 346906.3180006638 336919.9397151156 323438.7059323138 321173.19703110907 324642.64805824193 309716.1461621874 0.9706394816940103 1.0902133419305167 1.3231310626898727 1.2440331888030915 1.120078246805387 1.087834599164496 1.0443068917787075 1.0369921007054053 1.0481941354398685 1.0 18.24058707017436 2.6111525966727656 2.104549919042946 1.0359450973699484 1.163513442922183 0.28304991310474414 0.08781118932192236 0.44529781433031707 3.9111588358900002 0.03627044691776146 0.0328881552911407 408.46288142685665 -2.6111525966727656 0.1275683455522345 WQRPS(ph)SPPPFLPAASEEAEPAEGLR ddPTM_BT-474_Trastuzumab_2h_R1 5 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.6)S(0.4)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR 181.63 1.4314000000000006e-17 2885852000.0 1294713.0 1501853.0 1411710.0 1461470.0 1385230.0 1553037.0 1438880.0 1295944.0 1517188.0 1459077.0 True False 1287742.4090641385 1551841.2692156916 1610466.4971967095 1646491.9521521034 1561630.8295985286 1445679.207645864 1369275.8773446153 1392653.9219502928 1143297.3466776256 1365957.4566813323 0.9427397630617125 1.1360831639559068 1.1790019442548563 1.205375719498867 1.143249976022383 1.0583632752064036 1.0024293733652183 1.0195441410992558 0.8369933785897904 1.0 20.38148112030894 2.100517732467585 1.3413057506829147 0.9422458282463239 1.1282584121768997 0.4666797132071824 0.07982198777560687 0.39191847073093306 1.3301638271427083 0.05437924382115377 0.027760265948361854 126.04271007320938 -2.100517732467585 0.18601258393057585 WQRPSS(ph)PPPFLPAASEEAEPAEGLR ddPTM_BT-474_Trastuzumab_2h_R1 2 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 WQRPS(0.122)S(0.878)PPPFLPAASEEAEPAEGLR;WQRPS(0.402)S(0.598)PPPFLPAASEEAEPAEGLR 162.0 1.2103e-11 4944900000.0 1742750.0 1841850.0 1907960.0 2049110.0 1811310.0 1887190.0 1929710.0 1666840.0 2105940.0 1896830.0 True False 1733367.2276377266 1903154.8638281648 2176584.1837143837 2308527.115900019 2041969.5920245098 1756732.9972674148 1836362.555091931 1791228.0648420178 1586959.3051502404 1775772.6854421336 0.9761199965783633 1.0717333808715024 1.225711039232736 1.3000127408341344 1.149904832282122 0.9892780825322931 1.034120284733804 1.0087034672436332 0.8936725506368051 1.0 20.760015485148216 2.742375832845903 9.082670829407355 0.9916158408193377 1.1538597526153838 0.4511867917498602 0.0875445159812174 0.1251928476196281 159.0159799729517 0.02986205281523858 0.03014019211847151 552.5554067631878 -2.742375832845903 0.16224391179604603 WQS(ph)PVTK ddPTM_BT-474_Trastuzumab_2h_R1 9 WQSPVTK 7 0 A9Z1X7 A9Z1X7 SRRM1 1 WQS(0.999)PVT(0.001)K;WQS(1)PVTK;WQS(0.998)PVT(0.002)K;WQS(0.997)PVT(0.003)K;WQS(1)PVTK;WQS(0.994)PVT(0.006)K;WQS(0.999)PVT(0.001)K;WQS(1)PVTK;WQS(1)PVTK 148.91 0.0021522 73713170000.0 37759170.0 35348700.0 32230750.0 31664600.0 30816170.0 39323350.0 40557150.0 36040030.0 47369500.0 36835500.0 True False 37555878.82415818 36525260.11075962 36768559.44529888 35673335.11335546 34740426.58775033 36605019.37170903 38595245.71114135 38729520.04616415 35695921.44378009 34484626.853541866 1.0890614819078683 1.05917515842304 1.0662304568774081 1.0344706719565824 1.0074177904054133 1.0614880516809007 1.1192014886824064 1.1230952334398334 1.035125640053542 1.0 25.03945002015923 2.4638584113687343 24.866864801062686 1.086268474057319 1.049892438545597 0.0 0.04053131265290533 422.92444709984676 792947.4554359576 0.014078991966914176 0.011786005017086204 290.9768321116982 -2.4638584113687343 -0.03637603551172197 WQTMIEAHVDVK ddPTM_BT-474_Trastuzumab_2h_R1 2 WQTMIEAHVDVK 12 0 P61247;E9PFI5;D6RG13;H0Y8L7;D6RAT0;D6RB09;D6RAS7;D6RED7 P61247 RPS3A 40S ribosomal protein S3a 0 ; 116.08 0.00088023 1527250000.0 1037040.0 797210.0 814310.0 829690.0 714690.0 980590.0 980860.0 803390.0 1292020.0 1006910.0 False True 1031456.6918659746 823744.6529263778 928957.7698905958 934728.6689299672 805701.53520049 912804.1213605712 933412.0545509271 863343.0413317587 973618.9831810076 942648.1417409772 1.094211770216803 0.8738622784584326 0.9854766892924686 0.9915986968410254 0.8547213955277518 0.9683402331592285 0.9902019780434809 0.9158698809263551 1.0328551450627488 1.0 19.84635983717922 1.225183864882021 24.978511421528655 1.0164276016615343 0.9548736182292614 0.1081824803437087 0.0646406811623455 513.7308733335506 959265.6391455 0.055607042436134534 0.0142242932201963 16.79514914681089 -1.225183864882021 -0.06155398343227292 WQVVDTPGILDHPLEDR ddPTM_BT-474_Trastuzumab_2h_R1 4 WQVVDTPGILDHPLEDR 17 0 Q9BZE4-2;Q9BZE4;Q9BZE4-3 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 0 ;;; 298.13 3.1601e-46 1067290000.0 704930.0 890720.0 766590.0 903020.0 959510.0 860070.0 747360.0 799010.0 961760.0 884870.0 False True 701134.7352050864 920367.0767483894 874519.208680272 1017342.2394112743 1081697.9110386614 800615.3852870078 711207.3416075504 858636.1834905702 724747.1349237369 828396.8390246794 0.8463754352691324 1.1110219563753914 1.0556766606085741 1.2280856124572512 1.3057726201758668 0.9664635927747137 0.8585345912774086 1.0365034522602639 0.874879165131804 1.0 19.659962523007163 2.5128362585095965 24.87274710435233 0.9472046873730158 1.115390894875487 0.3069726737381876 0.12196494461903117 702.8584827693821 489485.88182349503 0.04040739722439201 0.03808231728214569 325.71387436539965 -2.5128362585095965 0.16818620750247115 WRCPVPT(ph)LPGCQK ddPTM_BT-474_Trastuzumab_2h_R1 4 WRCPVPTLPGCQK 13 1 E5RJ64 E5RJ64 C8orf58 1 WRCPVPT(1)LPGCQK;WRCPVPT(1)LPGCQK;WRCPVPT(1)LPGCQK;WRCPVPT(1)LPGCQK 89.28299999999999 0.012159 964260000.0 492900.0 2168650.0 1925100.0 3480940.0 2328250.0 1085110.0 1128110.0 713180.0 411322.0 962370.0 True False 490246.2811663381 2240832.2042733934 2196137.346730837 3921626.647091183 2624738.8368810806 1010098.899774185 1073539.0095013017 766401.1130546611 309957.20453242125 900950.7226735917 0.5441432797917306 2.4871861999551683 2.437577651543194 4.352764860938972 2.913298997188335 1.1211477768469886 1.1915624045625386 0.8506581922486819 0.3440334712342715 1.0 19.781088674705828 2.67271107135688 5.126769764938716 0.8918936905053342 2.636848298169229 0.46117630583682834 0.8883678997943145 0.20391015374762464 10.631597578225783 0.30618740841308184 0.29014590525467193 470.6640974932801 -2.67271107135688 1.7449546076638947 WREEQMER ddPTM_BT-474_Trastuzumab_2h_R1 3 WREEQMER 8 1 P09496-2;F8WF69;P09496-4;P09496-3;P09496 P09496-2 CLTA Clathrin light chain A 0 ;; 182.39 0.00020867 1483100000.0 503287.0 596340.0 587809.0 566670.0 456141.0 505797.0 521924.0 438329.0 672560.0 538636.0 False True 500577.35871244204 616188.8164048571 670567.3978725803 638410.3638980159 514227.852590475 470832.44390806806 496676.5421767002 471039.3357695622 506816.59984227695 504259.78933051927 0.9926973542289259 1.2219669889263636 1.3298054139174162 1.2660346460414813 1.0197677139261685 0.9337100714161027 0.9849616263000328 0.9341203596561563 1.005070423154605 1.0 18.94380766097263 3.1313862263765095 4.96017131426957 0.96715159951949 1.212320325130705 0.6298805499402771 0.08405544315136042 0.13102771661788554 5.1972482989169215 0.02535480341840607 0.030710651963111745 1353.2755219731766 -3.1313862263765095 0.24516872561121505 WREEQR ddPTM_BT-474_Trastuzumab_2h_R1 4 WREEQR 6 1 P09497-2;P09497;H0Y9Q6;F8VW50;Q2TAC6-3;Q2TAC6-2;Q2TAC6;A0A0C4DG89;Q7L014;D6RJA6 P09497-2;A0A0C4DG89 CLTB;KIF19;DDX46 Clathrin light chain B;Kinesin-like protein;Kinesin-like protein KIF19;Probable ATP-dependent RNA helicase DDX46 0 ;;; 133.47 0.01318 1642250000.0 1474730.0 1799520.0 1762200.0 1660290.0 1255070.0 1477360.0 1635710.0 1260430.0 2067730.0 1518520.0 False True 1466790.2175379065 1859415.935367186 2010302.4426830187 1870482.5437666303 1414895.725117292 1375233.5805313669 1556584.4582809943 1354489.6869338532 1558165.6476624715 1421606.75352962 1.0317833774326854 1.3079678545072726 1.4141058613373654 1.3157524323252716 0.9952792652428912 0.9673797462743364 1.0949472872271087 0.952787881438291 1.0960595423409447 1.0 20.43909100953198 3.236458748532081 24.999477524412626 1.0141423167550105 1.2807787604883691 0.5945227023174866 0.10073929279162326 36.239166535129506 431027.8023903507 0.02889162914304253 0.03618450592721382 1723.688358686257 -3.236458748532081 0.2666364437333586 WRPDEEILK ddPTM_BT-474_Trastuzumab_2h_R1 4 WRPDEEILK 9 1 P10155-3;P10155-5;P10155-4;P10155;G5E9R9 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 ;;; 147.74 8.360299999999999e-05 2344250000.0 2015880.0 2194730.0 2018490.0 1828840.0 1713270.0 2208180.0 2325210.0 2035510.0 3219040.0 2293500.0 False True 2005026.7260653253 2267780.261307698 2302675.846970403 2060370.9564848116 1931444.779153118 2055533.7140966 2212730.7091352106 2187410.092310345 2425750.7249260806 2147126.8664358617 0.9338184703513042 1.0561929510351271 1.0724451745102264 0.9595944183330624 0.8995485126406308 0.9573415275217051 1.0305542461066814 1.018761455833931 1.1297659038437362 1.0 21.03397600699057 1.7294533583369907 2.182299608933187 1.062021839899885 0.9847467667096373 0.2191807684663888 0.05869183241065992 0.4605472958124143 4.54347304825293 0.04167844486492349 0.01758160914461336 53.63562656160736 -1.7294533583369907 -0.07727507319024773 WRPEDAEEAEHR ddPTM_BT-474_Trastuzumab_2h_R1 1 WRPEDAEEAEHR 12 1 F8W8D3;Q14493;E7EUV9;H0YAE8 F8W8D3 SLBP Histone RNA hairpin-binding protein 0 120.14 0.00026566 241550000.0 214370.0 275650.0 266230.0 239530.0 232560.0 285330.0 263130.0 265810.0 307640.0 304560.0 False True 213215.85573874612 284824.84361605596 303712.8698873565 269854.4734404355 262175.13750888576 265605.80869457324 250401.3966457856 285646.09195583104 231826.24416480048 285122.72005306586 0.7478038077746427 0.9989552693767987 1.0652005207821764 0.9464502632067037 0.9195168223005546 0.9315490840054408 0.8782232317339773 1.001835602237057 0.8130753105948693 1.0 18.121223479696148 3.350561182810884 6.486522412690619 0.9267581542152592 0.9534054782425114 0.0 0.09122234434041611 1.2654792893273121 67.443123246596 0.024966774453990495 0.03386798499283161 2241.6158193007113 -3.350561182810884 0.026647324027252228 WRPGDADGTDCTSIGTIEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 WRPGDADGTDCTSIGTIEQK 20 1 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 Q9BTC0 DIDO1 Death-inducer obliterator 1 0 204.31 8.8972e-22 244730000.0 247420.0 229770.0 193680.0 228550.0 218720.0 281180.0 244090.0 232730.0 320530.0 297890.0 False True 246087.91821094614 237417.75555110184 220948.460503261 257484.40656624042 246572.69554499295 261742.68842652408 232282.4341856492 250097.4943789946 241539.67638195143 278878.4051635397 0.8824201288250892 0.8513307274970806 0.7922752583646359 0.9232855674688996 0.8841584395908961 0.9385548811964595 0.8329165323841919 0.8967976356302403 0.8661110789137936 1.0 18.08927669862137 -4.999999999998527 0.24230208200253373 1.7223678221107273 0.8619823719894671 0.4691062525868055 0.04022282865472333 153.57800169817395 1.5301538657803795 54.77726804652543 0.06133676859721141 1.0000000000033908e-05 4.999999999998527 -0.8603854501212601 WRPHS(ph)PDGPR ddPTM_BT-474_Trastuzumab_2h_R1 8 WRPHSPDGPR 10 1 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9IYH5;C9JH78 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR 110.9 0.0011052999999999998 34538500000.0 14992210.0 17408700.0 15975320.0 16900500.0 15181580.0 16853500.0 16598400.0 13793250.0 18267800.0 16275200.0 True False 14911493.607151104 17988138.055718612 18224506.196029324 19040101.56715269 17114864.224725462 15688457.213871645 15795471.979954444 14822572.355704298 13765945.465978876 15236502.80210025 0.978669042419344 1.1805949363418926 1.1961082167436217 1.2496372569516503 1.1232803516018317 1.029662608122193 1.0366861861356493 0.9728329754030633 0.9034845886079141 1.0 23.861028466711353 2.4725878784816193 1.5266272745459066 0.9659203442482444 1.1580317302525265 0.5563830141251966 0.07182975060871324 0.2923313451911969 1.3805256017527374 0.035360434406804274 0.026816085931815843 296.8847422081621 -2.4725878784816193 0.19211138600428213 WRPHS(ph)PGWR ddPTM_BT-474_Trastuzumab_2h_R1 2 WRPHSPGWR 9 1 Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 Q6Y7W6-4 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 WRPHS(1)PGWR;WRPHS(1)PGWR 103.46 0.0020703 794760000.0 604090.0 722130.0 677510.0 735860.0 683320.0 737260.0 668400.0 639490.0 777760.0 743040.0 True False 600837.646560708 746165.6605131972 772897.518977512 829019.8005505748 770336.7516450458 686294.9515233627 636066.9384640409 687211.9910644228 586091.469450056 695618.5510514504 0.8637458642420073 1.0726649819579182 1.1110938858793398 1.1917735651205448 1.1074126049120692 0.9865966778574338 0.9143904191494098 0.9879149859153111 0.842547210053785 1.0 19.40793688199945 2.560020338112056 4.1828997384134965 0.940733138834309 1.0779869363311922 0.3374716176165462 0.08779337192048009 0.2671446150729052 8.558302937077794 0.030428597437601453 0.02802869554327897 363.09505819836977 -2.560020338112056 0.13725379749688327 WRS(ph)LQQLAEER ddPTM_BT-474_Trastuzumab_2h_R1 3 WRSLQQLAEER 11 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 1 WRS(1)LQQLAEER;WRS(1)LQQLAEER;WRS(1)LQQLAEER 205.66 1.7577e-08 482189000.0 431219.0 393179.0 394697.0 420854.0 360897.0 469153.0 428011.0 376564.0 632011.0 462108.0 True False 428897.36481693474 406265.7253332754 450266.90683217475 474134.0732488673 406855.09374589147 436721.5573773704 407306.4727691996 404665.11783324764 476260.35756351415 432615.8718094369 0.9914045987796303 0.9390911240358549 1.0408007106833865 1.095970129957966 0.9404534605820177 1.0094903720262536 0.9414968319715605 0.9353912886753696 1.1008850774973467 1.0 18.722727070297765 WRVS(ph)LDVNHFAPDELTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 WRVSLDVNHFAPDELTVK 18 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 WRVS(1)LDVNHFAPDELTVK;WRVS(1)LDVNHFAPDELTVK 203.4 7.1658e-16 1367380000.0 1356950.0 1266870.0 981810.0 998280.0 838470.0 1152790.0 1480520.0 1076310.0 1715920.0 1415160.0 True False 1349644.3319713187 1309037.002110913 1120040.3139544975 1124662.1456440447 945244.1844989492 1073100.3406757696 1408901.5914643665 1156629.717591439 1293054.5081499936 1324843.277220569 1.0187199913960998 0.9880693245899872 0.8454134411311395 0.8489020286259891 0.7134762282841538 0.8099828554265385 1.0634477418492443 0.8730313520690306 0.9760056380877999 1.0 20.337390275000292 2.2570451240073264 24.999827728488082 0.9608397985743242 0.8667978570307326 0.23616610120982062 0.092359299568347 437.4402001227447 591625.3764053896 0.03498040496845457 0.029217165883334888 180.7361904531002 -2.2570451240073264 -0.09404194154359158 WS(ph)GNEPTDEFSDLPLR ddPTM_BT-474_Trastuzumab_2h_R1 4 WSGNEPTDEFSDLPLR 16 0 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 WS(1)GNEPTDEFSDLPLR;WS(1)GNEPTDEFSDLPLR;WS(1)GNEPTDEFSDLPLR;WS(1)GNEPTDEFSDLPLR 225.13 7.5103e-15 443636000.0 343067.0 320518.0 297341.0 287934.0 293793.0 339930.0 335854.0 295080.0 361233.0 342756.0 True False 341219.9653903267 331186.2478727777 339204.0282656969 324386.41487746214 331205.79710246023 316431.4392091482 319607.45893312694 317100.36798587884 272211.9674242082 320881.0186318251 1.0633846989305349 1.0321154217376025 1.0571021923079076 1.0109242867047212 1.0321763453465025 0.9861332420295563 0.9960310531793736 0.9882179049977271 0.8483267990885457 1.0 18.29167892552221 2.27664699055307 0.8329293451478449 0.9406324537045099 1.0447399087521527 0.4983838331188297 0.040559332834865514 0.5255599632120984 0.7007729392238453 0.03050511299505749 0.01860011785707959 189.08060818289022 -2.27664699055307 0.10410745504764285 WS(ph)GSHQFEQLSGSILWMAPEVIR ddPTM_BT-474_Trastuzumab_2h_R1 3 WSGSHQFEQLSGSILWMAPEVIR 23 0 P15056;H7C560;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y492;H7C4S5 P15056 BRAF Serine/threonine-protein kinase B-raf 1 WS(0.939)GS(0.061)HQFEQLSGSILWMAPEVIR;WS(0.815)GS(0.184)HQFEQLSGSILWMAPEVIR;WS(0.85)GS(0.148)HQFEQLS(0.002)GSILWMAPEVIR 160.93 1.1832000000000002e-11 831764000.0 461798.0 515561.0 447440.0 492144.0 399352.0 545549.0 561890.0 506185.0 558821.0 504745.0 True False 459311.7308785809 532721.1362217945 510435.6627818006 554449.3799393385 450207.11005524895 507836.4817142109 534709.2340717542 543959.0950553485 421107.0523677611 472531.7419660642 0.9720230200145311 1.1273764043983587 1.0802145495200586 1.1733590163328274 0.9527552756182492 1.0747140067273664 1.1315837362522736 1.1511588465826577 0.891171989030112 1.0 18.85005171898514 1.236473917070935 24.99996794814963 0.9455859767390622 1.0881902417797373 0.36257508324635024 0.07255466518678588 56.41977587616449 675862.3071573669 0.05778313780120528 0.01718844351430548 17.237485627448656 -1.236473917070935 0.14260426504067514 WS(ph)NSQPADLAHMGR ddPTM_BT-474_Trastuzumab_2h_R1 1 WSNSQPADLAHMGR 14 0 Q9BRG2;Q9BRG2-2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 WS(0.68)NS(0.32)QPADLAHMGR 150.45 4.6442e-06 176710000.0 122440.0 110020.0 96394.0 117970.0 103810.0 110530.0 111580.0 105020.0 132810.0 105720.0 True False 121780.79664436298 113681.94919150557 109965.437328332 132904.98990426335 117029.58816992363 102889.32125963345 106182.44912300677 112857.12568075441 100080.75506282388 98972.85908855419 1.230446384653815 1.1486174112621186 1.1110665928114938 1.3428427866810333 1.1824412192155984 1.03957107238435 1.0728441120206695 1.1402835759223398 1.0111939372518117 1.0 16.594745334775453 2.8123695777047897 5.7949430616948225 1.069713837332046 1.2040660498445876 0.5453053147986481 0.06789094554274398 0.20400341685635057 12.271207935220541 0.021379639969417632 0.022649170731896824 649.1866460755396 -2.8123695777047897 0.1343522125125416 WS(ph)PPQNYK ddPTM_BT-474_Trastuzumab_2h_R1 6 WSPPQNYK 8 0 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK 115.42 0.0025882 9505610000.0 4960350.0 4315580.0 4058020.0 3771230.0 3808380.0 5249830.0 5244220.0 4424630.0 6276310.0 5080080.0 True False 4933644.026746689 4459221.471476796 4629353.943057845 4248667.331327077 4293354.6189632425 4886921.608870543 4990537.043734138 4754818.358415889 4729597.498745218 4755864.945124701 1.0373810197878375 0.9376257574446059 0.9733989498174158 0.8933532344484343 0.9027494826917691 1.0275568514367066 1.049343726391979 0.9997799376725605 0.9944768308851137 1.0 22.18127631599619 2.7209633062982523 24.786418750904552 1.0159409750789445 0.9465501805444501 0.39873480477506396 0.04003228344516329 739.2130341887284 1041205.7393283454 0.013296879198110694 0.01256231518740946 525.9728248743666 -2.7209633062982523 -0.06939079453449448 WSAEASGKPSPSDPGSGTATMMNS(ph)SSR ddPTM_BT-474_Trastuzumab_2h_R1 2 WSAEASGKPSPSDPGSGTATMMNSSSR 27 1 Q5JRA6-2;Q5JRA6;Q5JRA6-4 Q5JRA6-2 MIA3 Melanoma inhibitory activity protein 3 1 WSAEASGKPSPSDPGSGTATMMNS(0.333)S(0.333)S(0.333)R;WSAEASGKPSPSDPGS(0.002)GT(0.005)AT(0.014)MMNS(0.326)S(0.326)S(0.326)R 168.57 4.2314e-12 2113000000.0 1494870.0 1525580.0 1498280.0 1356540.0 1327240.0 1759700.0 1452290.0 1468330.0 1727400.0 1475940.0 True False 1486821.786015672 1576358.0080674165 1709224.8007167834 1528277.8249108188 1496256.14683219 1638056.080888237 1382037.1844134394 1577904.2406286637 1301705.4159741125 1381744.245584192 1.0760470259002626 1.1408464432583492 1.237005188318432 1.1060497120179238 1.0828748891945508 1.1854987535668573 1.0002120065491016 1.1419654872248348 0.9420740633689126 1.0 20.398059173637105 1.5401577225245104 0.8916558950314513 0.9823653746627127 1.139132131935574 0.4032333417084123 0.06669892814070294 0.535116685487217 0.8470661022641192 0.05843960672050658 0.023029479898611493 34.68627975815461 -1.5401577225245104 0.15676675727286138 WSALESEDMHFILQTLEDR ddPTM_BT-474_Trastuzumab_2h_R1 1 WSALESEDMHFILQTLEDR 19 0 P78345;Q5VUC9;Q5VUC3 P78345 RPP38 Ribonuclease P protein subunit p38 0 104.89 0.00034422 19966000.0 11580.0 14948.0 16487.0 17294.0 15147.0 17573.0 14760.0 14378.0 19015.0 17270.0 False True 11517.654566658954 15445.535143743185 18808.226292427036 19483.41862680624 17075.880666697183 16358.21987239244 14046.00241132443 15450.959370004635 14329.008037945905 16167.81381440912 0.7123816923469368 0.9553261387744195 1.1633128948865505 1.205074405881776 1.0561650983065363 1.0117768586507117 0.8687632460738951 0.9556616341186704 0.8862675066913234 1.0 13.980836992662809 2.382497775805042 6.648570338985588 0.9258307214161288 1.0333950579596163 0.09796816320222379 0.12933098465018664 0.48451682239862975 28.83943361683737 0.04823471195518462 0.04021811299626846 241.26691763205258 -2.382497775805042 0.10756433654348752 WSEALVLYDR ddPTM_BT-474_Trastuzumab_2h_R1 1 WSEALVLYDR 10 0 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 Q9UHB9 SRP68 Signal recognition particle subunit SRP68 0 78.655 0.06828300000000001 82491000.0 54776.0 70657.0 67253.0 56612.0 66785.0 61911.0 60616.0 56094.0 59535.0 69186.0 False True 54481.092102185714 73008.77553194154 76721.63782644481 63779.07339544091 75289.67388429193 57631.238292817856 57683.77250439312 60280.01911956045 44863.39697812829 64770.49024688535 0.8411406474541171 1.127191955065561 1.1845153176084562 0.9846933866384914 1.1624070405721905 0.8897761630820634 0.8905872455885416 0.9306710338271551 0.6926518049673965 1.0 15.983049043409835 2.6906623425308633 11.638659357065345 0.8817936223355489 1.0664378910272079 0.36974606969928836 0.11685953002349925 1.2468740531852112 301.4159489571449 0.03640745873817799 0.03434424630920366 490.52635094981673 -2.6906623425308633 0.18464426869165895 WSEPNEEELIK ddPTM_BT-474_Trastuzumab_2h_R1 2 WSEPNEEELIK 11 0 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 ; 160.98 6.2455e-05 73007000.0 136675.0 134270.0 120169.0 134619.0 123639.0 168358.0 154953.0 137132.0 192313.0 165669.0 False True 135939.1569860199 138739.09578207094 137087.75067232762 151661.7515972031 139383.6937842328 156719.80773210322 147457.3314120567 147365.48618218637 144920.03801217422 155095.86258363316 0.8764847412529571 0.8945376973370771 0.8838904429085274 0.9778581392873826 0.8986938236928932 1.0104705897463535 0.950749613533646 0.9501574299103027 0.934390096538057 1.0 17.242800675255108 3.748175542585295 24.797141286578494 0.9568323648567981 0.8859276262666923 0.5596249964290587 0.030521040820792947 446.41379102370064 1151308.6981867994 0.007383186187257041 0.013109923590701318 5599.839022241542 -3.748175542585295 -0.07090473859010582 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK ddPTM_BT-474_Trastuzumab_2h_R1 1 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK 32 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 264.48 8.519599999999996e-60 2806000000.0 933840.0 787090.0 852820.0 795550.0 677100.0 1098200.0 938640.0 453840.0 1232100.0 880950.0 False True 928812.3091993772 813287.8148440471 972889.6431556751 896266.5484304202 763324.671513874 1022284.0188847324 893234.3972469908 487707.8453528246 928465.4642941448 824727.0167807591 1.1262057508736707 0.9861297111602287 1.1796505066042995 1.0867432861953628 0.9255482795912723 1.2395422947039103 1.0830667348981042 0.5913566979490308 1.1257851936490677 1.0 19.65355714323983 1.9361237085289744 24.999905410290047 0.8545344118136377 1.0888398347790098 0.21281692800889784 0.1528305111462618 230.89300733782167 90366.21381119471 0.0598721704599003 0.03864064897543365 86.32244017152084 -1.9361237085289744 0.23430542296537216 WSHDGK ddPTM_BT-474_Trastuzumab_2h_R1 6 WSHDGK 6 0 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;;;; 128.82 0.016463 4395310000.0 10089950.0 10143000.0 9036620.0 8939200.0 8960710.0 9496640.0 10849260.0 9176290.0 13968970.0 10778840.0 False True 10035626.830298822 10480603.623427022 10308897.5482909 10070901.803443173 10101803.30421073 8840159.629485972 10324439.845602019 9861071.356056461 10526504.518108074 10090925.202970792 0.9945199898364434 1.0386167187466129 1.0216008285598963 0.9980157023142215 1.0010780083115407 0.8760504563925822 1.023141053762095 0.9772217272161862 1.0431654487944324 1.0 23.26655512057304 5.158143464587136 17.636449148694677 0.9956754569643433 0.2840964079399494 0.0 0.044977530027070126 9079.474328440172 2521431.366906929 0.010428358654731185 390332.6615793059 143927.39486557362 -5.158143464587136 -0.711579049024394 WSLEDDDDDEDDPAEAEK ddPTM_BT-474_Trastuzumab_2h_R1 1 WSLEDDDDDEDDPAEAEK 18 0 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 265.95 9.971799999999998e-31 191870000.0 400510.0 302860.0 276270.0 234510.0 270510.0 348950.0 326660.0 348450.0 405720.0 333680.0 False True 398353.6986608445 312940.51201726415 315166.4146181125 264198.94195514807 304957.84506161354 324827.90783994406 310858.2078376176 374453.108393248 305735.74236946716 312384.2567221794 1.275204143898719 1.001780676468531 1.0089062039333416 0.8457498618123858 0.9762266775589443 1.0398344373955806 0.995114834209078 1.1986939173002877 0.9787168712582557 1.0 18.25296222202311 -0.3243336356462134 8.198861679148436 1.000004507101621 1.0367385492566534 0.008575076717043495 0.11416613860772767 0.0 0.0 0.11234249718880072 0.026479380525877224 0.47387780087020825 0.3243336356462134 0.0367340421550324 WSLELEDQER ddPTM_BT-474_Trastuzumab_2h_R1 5 WSLELEDQER 10 0 P37198 P37198 NUP62 Nuclear pore glycoprotein p62 0 ;;;; 266.91 2.0658e-17 1838200000.0 1062290.0 1298180.0 1195710.0 1267450.0 1234310.0 1310950.0 1218610.0 1146660.0 1391350.0 1257190.0 False True 1056570.748671513 1341389.1365336184 1364055.5747023667 1427909.0400454248 1391492.0621714522 1220327.112144363 1159661.1787577274 1232229.5918215008 1048470.4356348175 1176955.057865491 0.8977154578762717 1.1397114338132357 1.1589699756048448 1.2132230797623322 1.1822813903319662 1.0368510708960554 0.9853062536311901 1.0469640141198382 0.8908330259749329 1.0 20.166627801312693 2.536041363385702 4.791910767958635 0.9929671336820516 1.1266980102499762 0.34745396361714986 0.08818974409953015 0.25412202964618047 12.007228267316998 0.030140944550476105 0.02769549665213876 343.59067084998657 -2.536041363385702 0.1337308765679246 WSNS(ph)QPADLAHMGR ddPTM_BT-474_Trastuzumab_2h_R1 3 WSNSQPADLAHMGR 14 0 Q9BRG2;Q9BRG2-2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 WS(0.175)NS(0.825)QPADLAHMGR;WS(0.048)NS(0.952)QPADLAHMGR;WS(0.062)NS(0.938)QPADLAHMGR 165.17 2.5809e-06 664980000.0 457670.0 439282.0 422482.0 508990.0 449337.0 426113.0 433071.0 403007.0 494610.0 455670.0 True False 455205.9555719175 453903.235818424 481963.7933206261 573428.0818120794 506557.40352094185 396656.81127210817 412121.7012381224 433081.42876808054 372719.9929344428 426588.7504812859 1.0670838250149473 1.0640300179184785 1.1298089618558036 1.344217542457757 1.1874607639077066 0.9298342040773275 0.9660866602158602 1.015219994150032 0.8737220391159699 1.0 18.70248639548601 2.7399838920850184 24.997951369277395 0.9634315889840044 1.161992219397517 0.6029487589132765 0.08166860156873593 99.37412975814507 1745387.8891150746 0.027855252951362867 0.02812458877352536 549.5204918498233 -2.7399838920850184 0.19856063041351257 WTELAGCTADFR ddPTM_BT-474_Trastuzumab_2h_R1 2 WTELAGCTADFR 12 0 Q12907;D6RBV2;D6RDX1;D6RIU4 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 0 ; 103.87 0.0023376 273140000.0 284138.0 342600.0 364910.0 342275.0 294972.0 313216.0 307321.0 292877.0 416850.0 297589.0 False True 282608.23257869965 354003.2338939265 416286.1561454208 385606.97990575334 332534.93576397945 291564.11515115626 292454.7091497725 314732.96893927205 314122.9030038263 278596.6152412392 1.0143993757210106 1.2706659540260101 1.494225462089534 1.3841050422376917 1.193607235594139 1.0465457913000429 1.0497425063708452 1.1297085166190626 1.127518734324265 1.0 18.0878182047222 2.9875218030385677 4.565764153369256 1.0829614151148779 1.303695846641795 0.4297086366469647 0.118897817603595 0.19940056614648297 10.66683251992334 0.0381193522334521 0.043126346626501624 971.6767317812266 -2.9875218030385677 0.22073443152691707 WTETEIEMLR ddPTM_BT-474_Trastuzumab_2h_R1 4 WTETEIEMLR 10 0 F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3 F8W038 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 0 ;;; 211.85 1.1916e-07 417960000.0 305368.0 371466.0 341652.0 375602.0 346007.0 375283.0 372195.0 344102.0 410015.0 353645.0 False True 303723.93261757446 383830.0212540609 389753.63190758025 423153.17468865943 390068.9405058359 349340.5695311587 354190.50592702604 369780.6385545508 308972.2971695184 331075.07332928263 0.9173868922336382 1.1593443668056185 1.1772364134461333 1.2781184957038345 1.1781887913919717 1.0551702549461024 1.0698193082472056 1.116908726579884 0.9332393830272414 1.0 18.33679886862696 1.5219978754454826 1.1052662122894046 0.9746733491018847 1.1406040841341079 0.25836871471354905 0.09448563823219103 0.6369096719989674 1.5034444198116843 0.08724663341527983 0.0312952824535843 33.265792593824145 -1.5219978754454826 0.1659307350322231 WTETYVR ddPTM_BT-474_Trastuzumab_2h_R1 1 WTETYVR 7 0 P55884;P55884-2;C9JZG1;C9JQN7 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 91.626 0.037841 267680000.0 176630.0 151820.0 190450.0 140920.0 131250.0 169550.0 147120.0 160630.0 282050.0 175070.0 False True 175679.04370543774 156873.2369228719 217263.70457892478 158760.45755114677 147963.9095203014 157829.40757776942 140003.24354702237 172617.02626261266 212542.55677636838 163896.88271503232 1.071887645422098 0.9571459464279596 1.3256121835866848 0.9686606293005813 0.9027866001427641 0.9629799234936492 0.8542154141543141 1.0532050604204721 1.2968065850643196 1.0 17.32242888937246 WTGPEISPNTSGS(ph)SPVIHFTPSDLEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 WTGPEISPNTSGSSPVIHFTPSDLEVR 27 0 A0AVK6 A0AVK6 E2F8 Transcription factor E2F8 1 WTGPEIS(0.001)PNT(0.032)S(0.022)GS(0.565)S(0.381)PVIHFTPSDLEVR 83.198 0.006016399999999999 120800000.0 43778.0 51129.0 46397.0 40916.0 30700.0 55485.0 55368.0 40931.0 57219.0 63449.0 True False 43542.30411219306 52830.7978568668 52929.29431004651 46095.961404788024 34609.46302684382 51649.452547640954 52689.638313699965 43985.479063406594 43118.14414531826 59399.63049857813 0.7330399826853358 0.8894129039764216 0.8910711037388271 0.7760311136260593 0.5826545171467401 0.8695248120925146 0.8870364659080028 0.7405008868608953 0.7258991980825604 1.0 15.85816633617268 -0.7824462675485184 10.231196273943551 0.9999999978647023 0.7910003977611068 0.3117417290099479 0.09426984648266831 0.0 0.0 0.09283920878432553 0.021882411526833432 0.16502651653411704 0.7824462675485184 -0.20899960010359553 WTKEDLELINK ddPTM_BT-474_Trastuzumab_2h_R1 1 WTKEDLELINK 11 1 F5H8H2;Q03426;F5H092;A0A1B0GWC2;A0A1B0GWF3 F5H8H2 MVK Mevalonate kinase 0 122.45 0.00035622 365000000.0 515140.0 562780.0 421470.0 478640.0 519030.0 764450.0 736770.0 622530.0 994020.0 796830.0 False True 512366.5434774349 581511.7920923054 480809.31251708773 539235.7749239352 585125.3939681674 711605.3708217379 701129.6203652779 668986.3497432872 749057.09018559 745975.6271995142 0.6868408628857259 0.7795318920476978 0.6445375626038964 0.722859776194423 0.7843760206547247 0.9539257649652623 0.9398827452277578 0.8967938433253452 1.0041307823925079 1.0 19.508768969404176 2.8891606521619386 2.601155253203709 0.9482001980888154 0.7092927634955691 0.882825110996035 0.04341232236444236 0.09395673397004212 1.2422028763172412 0.01422764260685773 0.015509049478532889 774.7483360442332 -2.8891606521619386 -0.23890743459324626 WTKPSSFS(ph)DSER ddPTM_BT-474_Trastuzumab_2h_R1 5 WTKPSSFSDSER 12 1 Q8NC56;H0Y9B7;Q8NC56-2 Q8NC56 LEMD2 LEM domain-containing protein 2 1 WT(0.002)KPS(0.013)S(0.044)FS(0.941)DSER;WTKPS(0.008)S(0.037)FS(0.95)DS(0.005)ER;WTKPS(0.01)S(0.04)FS(0.949)DS(0.001)ER;WTKPS(0.006)S(0.016)FS(0.967)DS(0.011)ER;WTKPSS(0.003)FS(0.957)DS(0.04)ER 136.35 6.750199999999999e-05 4498590000.0 4179900.0 5719590.0 5957900.0 4384300.0 6293500.0 7523320.0 5503420.0 5180600.0 7140240.0 5758890.0 True False 4157395.8828305476 5909963.095584828 6796720.533004849 4939351.930467588 7094939.920502981 7003250.596390348 5237198.549493985 5567202.678553771 5380623.52631412 5391352.709766217 0.7711229642422752 1.0961929989998929 1.260670725677596 0.916161897833201 1.3159851158783926 1.2989783776721273 0.9714071461151137 1.0326170403336827 0.9980099273726497 1.0 22.36221586508968 WTLGFCDER ddPTM_BT-474_Trastuzumab_2h_R1 1 WTLGFCDER 9 0 M0R1L2;O95336;M0R0U3;M0R261 M0R1L2 PGLS 6-phosphogluconolactonase 0 172.94 0.00012984 188190000.0 163800.0 204690.0 193510.0 169410.0 125550.0 165320.0 160910.0 137610.0 215670.0 184430.0 False True 162918.1189998907 211502.98291228223 220754.52598092792 190857.28863000136 141538.04830684827 153891.81752142028 153126.1685641068 147879.1569694212 162521.01832993902 172659.51950153295 0.9435802872047505 1.2249714555148197 1.2785540387129826 1.1053968479757459 0.819752358372523 0.8913022459792839 0.886867802054478 0.8564784461137589 0.9412803811752533 1.0 17.397570353134597 3.342738844594832 5.371837040457192 0.8892370993817882 1.161404639503441 0.6112838391147408 0.09318284116755893 0.12366147598127814 5.434335734736925 0.025487992755511245 0.03463778903210466 2201.602169891811 -3.342738844594832 0.2721675401216528 WTPKS(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_BT-474_Trastuzumab_2h_R1 3 WTPKSPLDPDSGLLSCTLPNGFGGQSGPEGER 32 1 A0A087X0R7;Q9H4L4 A0A087X0R7 SENP3-EIF4A1;SENP3 Sentrin-specific protease 3 1 WT(0.017)PKS(0.983)PLDPDSGLLSCTLPNGFGGQSGPEGER;WT(0.002)PKS(0.998)PLDPDSGLLSCTLPNGFGGQSGPEGER;WT(0.149)PKS(0.814)PLDPDS(0.027)GLLS(0.005)CT(0.005)LPNGFGGQSGPEGER 228.63 1.3585999999999996e-36 1392920000.0 606047.0 602422.0 566969.0 563525.0 595936.0 701467.0 680351.0 629790.0 863930.0 701839.0 True False 602784.1102901518 622473.2520982111 646793.3070171081 634867.2072204805 671824.9172105935 652976.2373657045 647439.8229367884 676788.1278088201 651026.0275688985 657047.034145402 0.9174139429366299 0.9473800500565993 0.9843942265995758 0.9662431671215592 1.0224913625619094 0.9938044058215828 0.9853781986534506 1.030045175820776 0.9908362624536692 1.0 19.325637122761528 5.087677950378576 0.6167702971323619 1.006549439161808 0.814996239333096 0.7430408757986338 0.016103738654160614 2.3523380774635103 0.49916612578257913 0.007010016397295967 0.3506732844742212 122370.84258355436 -5.087677950378576 -0.191553199828712 WTS(ph)QDSLLGMEFSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 WTSQDSLLGMEFSGR 15 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 WT(0.021)S(0.979)QDSLLGMEFSGR;WT(0.006)S(0.994)QDSLLGMEFSGR 164.58 1.5457e-06 87971000.0 209441.0 205842.0 187862.0 215830.0 213087.0 231930.0 212130.0 194445.0 244208.0 241892.0 True False 208313.3929270827 212693.3265358835 214311.3366742238 243154.05587045162 240222.36638439956 215897.22500449442 201868.46148470565 208955.47327170352 184026.21061954746 226454.24546583983 0.9198917534028141 0.9392331157155005 0.9463780916686423 1.073744744198805 1.0607986875681543 0.9533812208305986 0.8914315607969342 0.922727117974143 0.8126419102498453 1.0 17.788860061098404 2.4214212738808003 4.9952030808027015 0.9032759259606805 0.9895330355496643 0.2689880202604864 0.06290820687568668 0.26809851153419495 14.037382290201236 0.0230508381696262 0.01931594430878601 263.8889917960917 -2.4214212738808003 0.0862571095889838 WTSQDSLLGMEFSGR ddPTM_BT-474_Trastuzumab_2h_R1 5 WTSQDSLLGMEFSGR 15 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 198.25 1.8652e-08 2506210000.0 1036900.0 1228370.0 1102080.0 1156840.0 1196140.0 1272660.0 1236570.0 1053210.0 1182730.0 1238360.0 False True 1031317.4456104204 1269255.5528846546 1257243.2845489173 1303295.8253865214 1348461.3389227681 1184684.0097193962 1176752.3849438648 1131805.878292016 891262.0392700372 1159326.8045866648 0.8895830248470071 1.0948211909386352 1.0844597740472004 1.1241832934684763 1.163141690149686 1.0218723530176395 1.015030775005166 0.9762612869936524 0.7687754960412557 1.0 20.14485587673605 1.6662997874789118 2.118251938913451 0.8855016181789374 1.069194631122528 0.37146356954375936 0.08798961579813719 0.27545646661533923 2.6517341808871824 0.061889886769428186 0.024287992357994868 46.376694118063234 -1.6662997874789118 0.18369301294359064 WTVHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 WTVHGK 6 0 A0AVT1;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ; 88.734 0.050966 1249890000.0 2732100.0 2843200.0 2642500.0 2635100.0 2649300.0 3278100.0 3026700.0 2675900.0 3632800.0 3329500.0 False True 2717390.677164844 2937834.1932493066 3014541.030978253 2968703.3898171107 2986672.651368645 3051492.662817375 2880286.9578831783 2875589.245944878 2737545.117026028 3117008.4594716397 0.8717944505115219 0.9425172345368916 0.9671263553417639 0.9524207035101637 0.958185609760877 0.9789811938253865 0.9240549056358391 0.9225477836631588 0.878260406611173 1.0 21.571730639725768 4.73703832307399 6.339971347480898 0.9448495149245599 0.8702303284407162 0.3296016924961329 0.03209738188607537 0.1472063514899854 33.69318575319257 0.0077395384402289555 0.04754389616166637 54580.602205712996 -4.73703832307399 -0.07461918648384369 WVDGVDEIQYDVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 WVDGVDEIQYDVGR 14 0 H3BU86;O14662;F8W9Z6;B7ZBM8;O14662-6;O14662-2;O14662-5;B7ZBM4;B7ZBM5;H0YEW0;E9PND6;Q96NX8;O14662-4;O14662-3 H3BU86;Q96NX8 STX16-NPEPL1;STX16 Syntaxin-16 0 ; 233.32 8.1165e-17 190940000.0 154603.0 162226.0 157886.0 158283.0 159351.0 154117.0 135623.0 136009.0 185680.0 147827.0 False True 153770.634626008 167625.59434231222 180114.97643028645 178321.6115708782 179643.40530262503 143463.2545423949 129062.39735982756 146158.68221970784 139921.65198452768 138392.55429893784 1.1111192752021355 1.2112327515845174 1.3014788067371397 1.2885202710088774 1.2980713175839098 1.0366399787123226 0.9325819442644546 1.0561166600335636 1.0110489881000886 1.0 17.07840680061263 2.673868600991573 5.786536700982309 1.006086395009444 1.2460431023778558 0.7955314433020335 0.059587228816750215 0.1012340766539074 6.731041311772185 0.020456596154891288 0.019348150522168317 471.92023670249347 -2.673868600991573 0.23995670736841168 WVDLTMDDIR ddPTM_BT-474_Trastuzumab_2h_R1 2 WVDLTMDDIR 10 0 F5GWE5;Q00169 F5GWE5 PITPNA Phosphatidylinositol transfer protein alpha isoform 0 ; 105.52 0.0059049 136594000.0 123442.0 163696.0 154298.0 149363.0 111873.0 130305.0 141490.0 110470.0 167219.0 140849.0 False True 122777.40198769544 169144.52240367827 176021.81721774154 168272.3404854664 126119.36342677841 121297.3220549763 134645.588155711 118713.83235529366 126010.11806980154 131859.8962331042 0.9311201168446807 1.282759407793418 1.3349154841330009 1.2761449484837426 0.9564649072969269 0.9198954763360712 1.0211261498164856 0.9003027891469694 0.9556364115973418 1.0 17.008646325583523 3.230799442643295 24.987043335421042 0.9528462670785658 1.2208924886027999 0.5597910445303881 0.1070526536050545 118.0397467490235 380027.6155937663 0.030812211667769998 0.03747546376695682 1701.3726324221054 -3.230799442643295 0.2680462215242341 WVDLTMDDIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 WVDLTMDDIRR 11 1 F5GWE5;Q00169 F5GWE5 PITPNA Phosphatidylinositol transfer protein alpha isoform 0 221.32 1.3629000000000003e-11 145860000.0 140680.0 183340.0 177620.0 189250.0 158150.0 149770.0 171650.0 159290.0 207840.0 167460.0 False True 139922.59451101723 189442.36106862963 202627.3520992839 213209.03059576044 178289.46507150974 139416.7524206576 163346.63373332244 171177.02865823064 156620.61691331447 156772.55943028087 0.892519679588716 1.2083897957466052 1.2924924670212796 1.3599894737355342 1.137249182633889 0.889293081182733 1.041933832852714 1.0918813169874646 0.999030809233972 1.0 17.258313534921108 2.989954370400066 24.849972444460377 1.0192781600552208 1.2036434484983471 0.3309056971944814 0.12353986255466268 546.6039258299091 1352144.046547255 0.037902112203679124 0.0428518908082185 977.1345519077895 -2.989954370400066 0.18436528844312638 WVDWTVSEPR ddPTM_BT-474_Trastuzumab_2h_R1 2 WVDWTVSEPR 10 0 X6RLT1;H0UI80;Q8IXH7-4;Q8IXH7 X6RLT1 NELFCD;TH1L Negative elongation factor C/D 0 ; 139.98 0.010593 104210000.0 159002.0 203737.0 194456.0 207292.0 173371.0 195500.0 200310.0 159334.0 224738.0 194468.0 False True 158145.9508987828 210518.26288338253 221833.71455814844 233535.14594587224 195448.7691995746 181985.5451574987 190620.24004149056 171224.3121616582 169354.33123491373 182056.88574756894 0.8686622878854476 1.1563323299689785 1.2184857147657249 1.282759204558077 1.0735587857444413 0.9996081412148885 1.0470366954743757 0.9404989625004865 0.9302275524460638 1.0 17.47402978179988 2.8480539488563212 3.3772504958663343 0.9807582453494231 1.1425115336643556 0.30077002308417755 0.10532923443262032 0.30367562464465037 6.4884878353160556 0.03486359190678833 0.03714637918030979 704.7806126687249 -2.8480539488563212 0.16175328831493252 WVEENVPSSVTDVALPALLDS(ph)DEER ddPTM_BT-474_Trastuzumab_2h_R1 2 WVEENVPSSVTDVALPALLDSDEER 25 0 Q8NBN3-3;Q8NBN3 Q8NBN3-3 TMEM87A Transmembrane protein 87A 1 WVEENVPSSVTDVALPALLDS(1)DEER;WVEENVPSSVTDVALPALLDS(1)DEER 135.58 2.486e-05 88085000.0 61005.0 79056.0 73662.0 69762.0 87398.0 81156.0 71407.0 71494.0 72110.0 68087.0 True False 60676.555858292646 81687.33116963893 84032.9693184181 78593.862047141 98527.61725146895 75545.8767406749 67952.7706087699 76829.24531917603 54339.456724495394 63741.62936778657 0.9519141016648857 1.2815381718328285 1.318337327612875 1.2330067936239542 1.5457342121420943 1.1851889807331142 1.0660657922106953 1.2053228962170774 0.8524955710020993 1.0 15.959948277403544 1.5849257442335196 1.2857595115329112 0.9460855363613067 1.2617392794780116 0.34645488840017213 0.15524579813296077 0.4662842012256826 1.4762339447162154 0.1346247339946499 0.04785989260103795 38.45260300787806 -1.5849257442335196 0.3156537431167049 WVEISNEVR ddPTM_BT-474_Trastuzumab_2h_R1 4 WVEISNEVR 9 0 E9PKP7;P17480-2;P17480 E9PKP7 UBTF Nucleolar transcription factor 1 0 ;;; 110.22 0.0054034 630400000.0 303752.0 377769.0 376343.0 346165.0 308065.0 326853.0 335216.0 279896.0 403075.0 335559.0 False True 302116.6329820201 390342.81279881747 429328.8231680027 389989.4535069032 347295.251705689 304258.4214392014 319000.32143052353 300783.26080308965 303742.5671782827 314143.33733348665 0.9617158700434276 1.2425627616747428 1.3666653789707406 1.2414379270851772 1.10553117138693 0.9685337401130628 1.015461044433614 0.9574713993815687 0.9668916417470833 1.0 18.261063456724013 2.966037658732245 3.074434217124795 0.9803900985172065 1.2165989349276125 0.5406538891558252 0.09585720752038702 0.1943245410073549 3.7098300716543093 0.031232667425496383 0.035342446214229654 924.7783602455007 -2.966037658732245 0.23620883641040602 WVESLK ddPTM_BT-474_Trastuzumab_2h_R1 4 WVESLK 6 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 137.44 0.029627 4334570000.0 6283550.0 6298430.0 5772720.0 5612160.0 5515540.0 7135190.0 7137280.0 6107890.0 7959830.0 6895090.0 False True 6249720.064968034 6508069.4350686595 6585468.798618264 6322658.880572278 6217911.325833164 6641951.109730606 6792022.499342666 6563691.767036977 5998236.552757454 6455039.453016464 0.9681923883590698 1.008215283955765 1.020205816951413 0.9794919034333208 0.9632646509894701 1.028955927856769 1.05220464549891 1.0168321688521578 0.9292331358183188 1.0 22.621994482594403 2.721687908917807 24.762615477763873 1.0112258326014243 0.9903346154874719 0.04787186638521834 0.03380311437797658 2099.4442391224356 3081169.2018743376 0.011358548878867893 0.010738810556994435 526.8511215651331 -2.721687908917807 -0.020891217113952365 WVGGQHPCFIIAEIGQNHQGDLDVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 WVGGQHPCFIIAEIGQNHQGDLDVAK 26 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ; 311.01 5.4774e-82 1423290000.0 1212200.0 1102520.0 1049390.0 964450.0 967230.0 1149540.0 1119140.0 1016410.0 1424440.0 1137600.0 False True 1205673.6498880796 1139216.7117125872 1197134.990538607 1086549.271112714 1090401.007278638 1070075.0055260912 1065002.9226700282 1092259.675425401 1073405.848518099 1064997.3940516398 1.1320907042798065 1.0696896706747703 1.1240731641457518 1.0202365537995195 1.0238532163260545 1.0047677219707873 1.0000051912036774 1.0255984489032837 1.0078952817287845 1.0 20.022418469640662 3.699122836787807 7.215425711405934 1.0128593016694618 1.1046982866018138 0.8635073536361045 0.01762317128435074 0.07474215235462847 11.636872631928393 0.004371247791887046 0.006875650051902681 5001.759858263524 -3.699122836787807 0.09183898493235199 WVGGQHPCFIIAEIGQNHQGDLDVAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 WVGGQHPCFIIAEIGQNHQGDLDVAKR 27 1 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 169.6 2.4858e-12 628230000.0 58020.0 61437.0 55858.0 64224.0 63095.0 66585.0 63018.0 55694.0 81897.0 78422.0 False True 57707.62676662798 63481.89340554925 63722.32087356031 72354.75181496482 71129.77425663565 61982.1356742304 59969.57858786203 59850.169088401606 61714.58171357648 73417.040819548 0.7860249626305119 0.864675185718553 0.8679500040077021 0.9855307569914977 0.9688455631365717 0.8442472617028587 0.8168345920569241 0.8152081372430625 0.8406029584502727 1.0 16.163827345239973 -0.04129608617319227 8.467068461009998 1.0 0.865674424128158 0.30325973249846605 0.06113911588305785 0.0 0.0 0.06556091669418698 0.015452856258421988 0.9092931382924903 0.04129608617319227 -0.13432557587184202 WVIYNDQK ddPTM_BT-474_Trastuzumab_2h_R1 1 WVIYNDQK 8 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 145.63 0.0013173 327630000.0 277870.0 294390.0 232090.0 247680.0 239810.0 281790.0 272550.0 273020.0 409510.0 321330.0 False True 276373.9787942591 304188.5931874872 264766.2546375564 279036.26260479767 270348.38203476917 262310.5205623099 259365.71525789142 293394.1387674689 308591.74765286496 300822.4442955463 0.9187279208553085 1.0111898196287303 0.8801412915102634 0.9275779380698584 0.8986975113105672 0.8719778910665325 0.8621887102382386 0.9753066778462204 1.0258268739738237 1.0 18.1985526846236 1.5394292780483574 5.063322550668325 1.009696171622726 0.9116357772722364 0.5321237735665942 0.039753982693393405 0.12435438430562241 6.901361077446062 0.024341987978207507 0.01076350832999113 34.62814903920525 -1.5394292780483574 -0.09806039435048952 WVNDPHR ddPTM_BT-474_Trastuzumab_2h_R1 5 WVNDPHR 7 0 Q9H4A6 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 0 ;;;; 116.73 0.0053911 1280060000.0 1385320.0 1663110.0 1577180.0 1484930.0 1207960.0 1386850.0 1539900.0 1129630.0 1804580.0 1401640.0 False True 1377861.59104352 1718465.610978775 1799233.2349056872 1672921.9857466985 1361786.5458601408 1290980.3237937437 1465409.154010739 1213928.726744913 1359865.4391331288 1312186.1351956227 1.0500504113603566 1.3096203083433613 1.37117226485361 1.2749121034549695 1.037799828343045 0.9838393267288124 1.1167692712987503 0.9251193060075572 1.0363357778737678 1.0 20.3235409518386 3.2094335611457967 5.6387431189674055 1.0106532823690495 1.2648549612845734 0.6223310822628338 0.08942218795792752 0.10943596456890678 9.60579439845035 0.025886627102218156 0.032060089295129386 1619.6961920197316 -3.2094335611457967 0.2542016789155239 WVNEAQEAASSDNIMVQYHALGLLYHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 WVNEAQEAASSDNIMVQYHALGLLYHVR 28 0 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 179.33 9.2391e-18 218810000.0 64925.0 76385.0 81680.0 66187.0 70042.0 70227.0 79939.0 54581.0 82055.0 84920.0 False True 64575.451013845595 78927.42854929241 93179.83402471291 74566.26741369396 78961.43352854048 65372.37278657627 76072.04517336485 58654.11137670212 61833.64473066796 79500.3328963303 0.8122664228092353 0.9927936861876419 1.1720684760681555 0.9379365431202603 0.993221419984586 0.8222905540763318 0.9568770645597674 0.7377844751063874 0.7777784378752227 1.0 16.278673281039264 2.742924647371819 23.44900290941316 0.8424426828001895 0.9904254793421513 0.22885543878204817 0.10998354208517261 203.03534342052998 1090958.194960964 0.0343384258016423 0.03524905979336944 553.2541080697472 -2.742924647371819 0.14798279654196178 WVPEITHHCPK ddPTM_BT-474_Trastuzumab_2h_R1 3 WVPEITHHCPK 11 0 A0A590UJK8;P60953-1;P60953;A0A494C1M1;Q5JYX0;A0A494BZX6 A0A590UJK8 CDC42 Cell division control protein 42 homolog 0 ;; 188.28 1.8624e-06 1885590000.0 1844360.0 1996700.0 2028810.0 1729930.0 1839500.0 2577770.0 1907000.0 1325272.0 2438250.0 1968620.0 False True 1834430.170687662 2063158.9524693617 2314448.813267354 1948938.9606262823 2073749.4214292886 2399574.8273178795 1814751.124552553 1424170.5262348566 1837375.958376102 1842980.9861796235 0.9953603343951547 1.1194683873251197 1.2558180635737604 1.0574927116672552 1.1252147672603137 1.3020073702941657 0.9846824997985524 0.7727537814630779 0.9969587164243401 1.0 20.81360975625272 2.0099973236401487 23.56698284187119 0.8931704605966893 1.142115446613424 0.48847709491789537 0.10231081761190777 72.12117971365628 170011.92820433108 0.03755168308199978 0.02769319924714781 102.32866862097445 -2.0099973236401487 0.24894498601673476 WVPFDGDDIQLEFVR ddPTM_BT-474_Trastuzumab_2h_R1 2 WVPFDGDDIQLEFVR 15 0 A0A0C4DGS1;P39656-2;P39656-3;P39656 A0A0C4DGS1 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit 0 ; 167.44 3.0491e-06 159078000.0 98650.0 172813.0 194319.0 145762.0 173076.0 177879.0 154096.0 105004.0 164163.0 142279.0 False True 98118.87936104528 178564.97623733545 221677.42614897364 164215.4542546853 195116.20269817655 165582.64341212646 146641.78777611448 112839.93167950798 123707.22832149958 133198.63240881954 0.7366357866189961 1.3405916638038398 1.6642620283712133 1.2328614137018123 1.46485139651672 1.2431257019509958 1.100925626068251 0.8471553321446599 0.9287424809423832 1.0 17.0232197443299 2.080194366878357 2.616744516011143 0.9139408725917817 1.3100331171174606 0.3326556669926328 0.22395275508575185 0.3008613916857576 4.036825640428358 0.1083572929500663 0.06633822103292308 120.28026240120536 -2.080194366878357 0.3960922445256789 WVTYFNKPDIDAWELR ddPTM_BT-474_Trastuzumab_2h_R1 1 WVTYFNKPDIDAWELR 16 1 H3BRI0;H3BNX8;P20674 H3BRI0 COX5A Cytochrome c oxidase subunit 5A, mitochondrial 0 159.81 8.2089e-09 191260000.0 209660.0 253870.0 329230.0 192670.0 290160.0 512200.0 246680.0 196210.0 320610.0 299540.0 False True 208531.21385541605 262319.90948234434 375582.7222815399 217062.00224509992 327110.1560869381 476792.8195891084 234747.14599088862 210852.18653419183 241599.96145389596 280423.10075090383 0.743630654168722 0.9354432954343505 1.339343018730704 0.7740517869742595 1.1664879077758497 1.7002622762260846 0.8371177173431636 0.7519073356281338 0.8615551315385606 1.0 18.097245675304638 2.0659548583902776 24.999998957833153 0.8312639074325311 1.11376499566752 0.16587749072585556 0.26786831605268535 92.26678105108687 34972.36245811178 0.10266562844106879 0.07582358302336203 116.40050336482656 -2.0659548583902776 0.2825010882349889 WVYHNHIFWTLPHEYCAMPQVAPDLYAELQK ddPTM_BT-474_Trastuzumab_2h_R1 1 WVYHNHIFWTLPHEYCAMPQVAPDLYAELQK 31 0 Q9H993;F5GZY1 Q9H993 ARMT1 Protein-glutamate O-methyltransferase 0 85.814 0.00023998 268460000.0 55540.0 69062.0 46848.0 64273.0 55082.0 58557.0 73767.0 45625.0 91528.0 44134.0 False True 55240.978811074085 71360.68692113944 53443.79118988427 72409.95520994088 62096.36620340757 54509.092418351145 70198.60839269443 49029.76917905561 68972.15081236465 41317.33033498161 1.3369929364556237 1.7271369263836827 1.2934957500057962 1.752532281802207 1.5029133223264728 1.31927914936461 1.6990112338710393 1.1866635327487316 1.6693273803793873 1.0 15.33445941891916 -2.9670535546303514 0.2944380928264073 1.3203313902934567e-10 1.5253403584771954 0.35053302694065747 0.198620665842431 68.51078524927875 1.9001116943040348 42.768687451554754 0.19231686968835962 0.0010788136810959258 2.9670535546303514 1.5253403583451624 WWDNLNHLNQFVDHEK ddPTM_BT-474_Trastuzumab_2h_R1 1 WWDNLNHLNQFVDHEK 16 0 Q13907;Q13907-2 Q13907 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 0 264.52 2.9522999999999997e-27 955970000.0 859990.0 731950.0 777510.0 614390.0 517360.0 898890.0 907210.0 499320.0 971980.0 872870.0 False True 855359.9093938723 756312.513276882 886976.6497619293 692171.7110051734 583242.7293670326 836751.8500594571 863324.7864212499 536581.7938955851 732448.5528647209 817162.6892983962 1.0467437152915922 0.9255348086514336 1.0854345913951042 0.8470427248697096 0.713741262303344 1.0239721673757276 1.0564907058623634 0.6566401047461997 0.8963313700648649 1.0 19.640263808227704 3.7238517147192853 24.20797024755659 0.8671809447993615 1.0098674171149922 0.18009679699493752 0.1270320077157507 824.7808883077985 1357427.9284640695 0.03491614470430636 0.05438248564360165 5294.8262675326205 -3.7238517147192853 0.1426864723156307 WWGNRK ddPTM_BT-474_Trastuzumab_2h_R1 1 WWGNRK 6 1 A0A2R8Y5Y7;P32969;D6RAN4;E7ESE0;H0Y9R4 A0A2R8Y5Y7 RPL9 60S ribosomal protein L9 0 119.23 0.033971 645300000.0 408880.0 527650.0 499720.0 479580.0 442620.0 469510.0 609280.0 428760.0 865510.0 545200.0 False True 406678.6355108381 545212.5112788387 570076.2323558953 540294.7788275552 498985.03338572045 437053.87880765845 579806.7987243737 460756.2483991648 652216.6577398138 510404.86923079705 0.7967765592121427 1.0681961402533215 1.1169098625861968 1.0585611764280456 0.9776259269189833 0.856288615479547 1.1359742699911317 0.9027269843517463 1.277841762604525 1.0 18.96128256682646 1.2500432063056732 24.999999303232798 1.1389209580649813 0.9960878911474573 0.19122578946161428 0.12255313426674894 309.031696653547 672835.7765822692 0.07894418365089119 0.028288377413024233 17.78456333092281 -1.2500432063056732 -0.14283306691752395 WYFDVTEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 WYFDVTEGK 9 0 H7C0V9;E9PG40;P05067-7;P05067-11;P05067-8;P05067-9;P05067 H7C0V9 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 0 149.94 0.0037282 0.0 173200.0 190570.0 175010.0 169010.0 189810.0 178400.0 187200.0 173720.0 244570.0 173650.0 False True 172267.51044432903 196913.0072480023 199649.88678581035 190406.64867101412 213981.17840798784 166067.62790842846 178144.42082655395 186683.86853228568 184299.00057009884 162567.50833075528 1.0596675326648817 1.2112691476292337 1.2281044892415298 1.1712466447084746 1.316260429929379 1.0215302529614463 1.095818116767259 1.1483467419114521 1.1336767258259828 1.0 17.31067941540334 2.7225496347261453 24.89545785331819 1.095150536055167 1.1983480665422042 0.3827501388581628 0.07328754102200835 934.5819313651148 1453178.6579906817 0.023413019440003145 0.02213352444098165 527.8975357829293 -2.7225496347261453 0.10319753048703717 WYHPGCFVK ddPTM_BT-474_Trastuzumab_2h_R1 1 WYHPGCFVK 9 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 100.15 0.0048555 370870000.0 406190.0 481890.0 626290.0 400020.0 209610.0 331190.0 447290.0 270490.0 996760.0 383980.0 False True 404003.11817195156 497929.41734134394 714466.1881897334 450662.490985025 236302.5910441935 308295.614837401 425652.8738862677 290675.3373203891 751121.8538997092 359474.0676581831 1.1238727755908953 1.385160884024645 1.987531931980989 1.2536717708759766 0.6573564334796163 0.8576296388938779 1.184098971753959 0.8086128137531929 2.089502196341841 1.0 18.455528173306206 3.4816877454804303 24.86919391730153 1.0565807597185966 1.5096717996946016 0.15038071335047443 0.41707707267668853 292.3801278515438 1592310.5019837879 0.11276067552225999 0.1566528328932224 3031.7106228752837 -3.4816877454804303 0.4530910399760051 WYMQFDDDEK ddPTM_BT-474_Trastuzumab_2h_R1 1 WYMQFDDDEK 10 0 M0R0N4;M0QYZ2;P53680;X6R390;P53680-2 M0R0N4 AP2S1 AP-2 complex subunit sigma 0 146.11 6.8042e-05 250600000.0 157530.0 135260.0 118030.0 114420.0 121710.0 157050.0 149300.0 137340.0 192240.0 150480.0 False True 156681.8759832285 139762.04733360335 134647.59806484875 128905.56026825296 137209.0470683113 146193.50315593422 142077.78861861362 147589.00819838897 144865.02788402422 140876.23756759052 1.1121952054409079 0.9920909994955495 0.9557864434038895 0.9150269945732034 0.9739687078346357 1.0377442333792635 1.008529125080066 1.0476501271378558 1.028314145701967 1.0 17.104068758657082 2.7386527666306004 24.999750655511633 1.0277017727734334 0.9838949710734768 0.10429974734834979 0.04877877124187994 17.308194894017138 4694982.132908275 0.016000473786690075 0.01607650961898953 547.8387738353065 -2.7386527666306004 -0.043806801699956655 WYMQFDDDEKQK ddPTM_BT-474_Trastuzumab_2h_R1 2 WYMQFDDDEKQK 12 1 M0R0N4;M0QYZ2;P53680;X6R390;P53680-2 M0R0N4 AP2S1 AP-2 complex subunit sigma 0 ; 176.08 2.3663e-05 522390000.0 639730.0 510010.0 428360.0 394110.0 390470.0 568210.0 612700.0 504760.0 960980.0 573900.0 False True 636285.7647606842 526985.3745424442 488669.36462813424 444004.2855909917 440194.0400029872 528930.9801224667 583061.3602587046 542427.7543193444 724159.3554722718 537273.2106594909 1.1842871599342495 0.9808517604955241 0.9095360701649418 0.8264031721328268 0.8193113508538027 0.9844730197383482 1.0852232136104643 1.009593896657394 1.3478419193530649 1.0 19.035296379088518 1.901068237501026 1.557300290774729 1.1437164136263338 0.9394270284258162 0.26539367139246106 0.1304667827855846 0.5138933227590754 2.3289591019052964 0.09279828873901824 0.04137165760285426 79.62844549145026 -1.901068237501026 -0.20428938520051765 WYNHIK ddPTM_BT-474_Trastuzumab_2h_R1 1 WYNHIK 6 0 P24534;C9JZW3;F2Z2G2 P24534 EEF1B2 Elongation factor 1-beta 0 81.672 0.06126 759900000.0 1430600.0 1748200.0 1601600.0 1558500.0 1117500.0 1329300.0 1376600.0 1068400.0 2243900.0 1375100.0 False True 1422897.8085546028 1806387.7801907838 1827091.3586432447 1755805.9402033947 1259807.0010585657 1237408.6198356163 1310008.5988773191 1148129.433225273 1690920.9117195255 1287339.940717659 1.1053007551069796 1.403194077225452 1.4192765258449824 1.3639023265483226 0.9786125336531201 0.9612135697007838 1.0176089138872075 0.8918618904849797 1.3134999219995307 1.0 20.295961637668487 3.238812966872023 24.99999972922477 1.0093487087783415 1.3355351610269912 0.542224966551007 0.1323372249733638 4.630756920129296 458721.4303346274 0.036703213701941816 0.046726261105125795 1733.0574790171283 -3.238812966872023 0.3261864522486497 WYPEVR ddPTM_BT-474_Trastuzumab_2h_R1 1 WYPEVR 6 0 P63000;J3KSC4;J3QLK0;P60763;P63000-2 P63000 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 0 101.72 0.084216 588830000.0 414780.0 614820.0 680090.0 526910.0 558810.0 653140.0 477190.0 366760.0 617290.0 493960.0 False True 412546.87056639045 635283.9120334621 775840.7605517501 593616.7519747012 629971.1411736353 607989.9691261819 454106.4966571759 394129.49356954434 465167.1507622207 462435.0498995677 0.8921185162240362 1.3737797603607986 1.6777291442771225 1.2836759499601593 1.3622910748448962 1.3147575411038286 0.9819897880919697 0.8522915675512528 1.0059080747950364 1.0 18.818891224351365 2.2227370744181174 4.404451792276496 0.932337151960071 1.3395178382925388 0.4745158612164957 0.18328724806713032 0.16428342368348234 7.536514651374146 0.07082117704613515 0.05372086874663778 167.0079227987914 -2.2227370744181174 0.40718068633246773 WYVVQTNYDR ddPTM_BT-474_Trastuzumab_2h_R1 1 WYVVQTNYDR 10 0 A0A1B0GV06;A0A1B0GTP7;A0A1B0GUE3;A0A1B0GUG1;A0A1B0GUW4;E7EMM4;A0A1B0GW68;A0A1B0GUA4;A0A1B0GTM3;A0A1B0GTZ5;A0A1B0GUH5;Q13510-3;Q13510;Q13510-2 A0A1B0GV06 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta 0 118.04 0.002042 349690000.0 177360.0 181250.0 174970.0 168400.0 150680.0 160730.0 191530.0 149130.0 236490.0 168910.0 False True 176405.11346654838 187282.79668206142 199604.25513349645 189719.42273355895 169868.20484966872 149619.11341772243 182264.96218434762 160258.83786679606 178210.2083036459 158130.01918887332 1.1155700503384305 1.1843595393381159 1.2622793329019049 1.1997685430427645 1.0742312289659253 0.9461777984040759 1.1526272058858544 1.013462457595607 1.1269853075195573 1.0 17.27075174740724 3.195696874877041 5.1828172582855245 1.0508361800325643 1.1955798165777467 0.5217460209369279 0.06501749155415004 0.14617062832158076 9.007898747873547 0.01828679361498233 0.022551553105842698 1569.2671184482722 -3.195696874877041 0.1447436365451824 Y(ph)EAEY(ph)GEKITCR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEAEYGEKITCR 12 1 Q96N23;Q96N23-2;A0A1B0GU80 Q96N23 CFAP54 Cilia- and flagella-associated protein 54 2 Y(1)EAEY(1)GEKITCR 62.924 0.08461 232410000.0 21798.0 31594.0 32029.0 31409.0 41390.0 31584.0 36870.0 30730.0 40385.0 38352.0 True False 21680.641989985477 32645.58719102367 36538.40479894133 35385.37617956267 46660.7711622497 29400.6724207388 35086.45724292221 33023.228643778195 30432.657881275078 35904.34252520085 0.6038445621102261 0.9092378496587176 1.0176597656201456 0.9855458613321236 1.2995857292052913 0.818861183716226 0.977220435614311 0.9197558379073385 0.8476038200647941 1.0 15.131870723895656 4.72350081429747 2.989923078892018 0.9820042525405036 0.5483643868066763 0.45949805237458374 0.1230025777223404 0.3271364941318748 4.388074046377381 0.03022233346629946 0.3329809929451667 52905.498918105106 -4.72350081429747 -0.4336398657338273 Y(ph)HGFGNVHAYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YHGFGNVHAYLK 12 0 Q9BWT1-3;Q9BWT1-5;Q9BWT1;Q9BWT1-6;Q9BWT1-2 Q9BWT1-3 CDCA7 Cell division cycle-associated protein 7 1 Y(1)HGFGNVHAYLK 48.004 0.069106 410340000.0 872070.0 523720.0 277520.0 302250.0 248590.0 329090.0 302200.0 47523.0 582230.0 199030.0 True False 867374.8720160852 541151.7036045743 316592.4037529173 340514.8190096093 280246.46299163246 306340.782894533 287581.43148389226 51069.40757690433 438747.2179822903 186327.73500184418 4.6551033962147415 2.9043003372483343 1.6991158280853027 1.8275047405381655 1.504051251354817 1.6440965317992031 1.543417202388286 0.27408376738116236 2.3547069789580592 1.0 17.507482910774765 7.806225904165096 0.6244069292660098 1.2378617238836098 199.99999999212812 0.7944068176410587 0.5097356239183091 60.00393623843499 0.5530887758392121 0.2079448077327156 16198.284104205992 64006768.87956227 -7.806225904165096 198.7621382682445 Y(ph)KGDY(ph)YLCT(ph)ET(ph)NFMNKVDIETLEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YKGDYYLCTETNFMNKVDIETLEK 24 2 H0YCN8;Q9BYV7-6;Q9BYV7-4;Q9BYV7-2;Q9BYV7 H0YCN8 BCO2 Beta,beta-carotene 9,10-oxygenase 4 Y(0.791)KGDY(0.791)Y(0.791)LCT(0.813)ET(0.813)NFMNKVDIETLEK 62.19 0.015974000000000002 36323000.0 5876.9 10365.0 8479.0 8756.4 9222.5 5601.0 6662.0 6601.3 7556.9 9204.7 True False 5845.2594233849695 10709.992759225182 9672.76949921082 9864.959342186086 10396.930708959844 5213.816053335804 6339.733608688575 7093.922526722191 5694.603252272067 8617.24816545986 0.6783208874979682 1.242855323832216 1.1224893740419084 1.1447922994404842 1.2065256227194905 0.6050442035816163 0.7357028005877623 0.823223654525403 0.6608377921733178 1.0 13.073011516867796 2.7427279763889496 24.98490429873371 0.7575577034487336 1.0941715323419763 0.4437924927071766 0.17527393258221918 303.75700431994204 1821141.4721618826 0.05189137138816102 0.05326707462430079 553.0036227417341 -2.7427279763889496 0.33661382889324265 Y(ph)LRAFLPESGFT(ph)ILPCT(ph)RY(ph)SMETNGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLRAFLPESGFTILPCTRYSMETNGAK 27 2 Q86Y97 Q86Y97 SUV420H2 Histone-lysine N-methyltransferase SUV420H2 4 Y(0.68)LRAFLPES(0.63)GFT(0.69)ILPCT(0.69)RY(0.68)S(0.629)MET(0.001)NGAK 44.317 0.060724 881830000.0 181280.0 122710.0 85564.0 65824.0 67957.0 96036.0 92039.0 58938.0 178140.0 94867.0 True False 180304.00862210148 126794.32817023853 97610.66746437966 74157.31165091331 76610.92113730383 89397.25736442735 87586.72194687591 63336.25284109988 134239.78395370426 88812.50684027497 2.030164613485909 1.427662979925474 1.0990644328948822 0.8349872589936198 0.8626141054106815 1.0065841011019319 0.9861980599691486 0.7131456491258273 1.511496395379629 1.0 16.4384752350202 4.616609170723921 1.649963497098358 0.9565091764957225 2.261269718369002 0.7182622662857742 0.2005476642624471 0.368751663242044 1.179596580887588 0.05144840097560978 0.7115516333365608 41362.72767879694 -4.616609170723921 1.3047605418732795 Y(ph)MEDSTYYK ddPTM_BT-474_Trastuzumab_2h_R1 2 YMEDSTYYK 9 0 E7ESA6;Q05397;Q05397-7;H0YBP1;Q05397-5;E9PEI4;H0YB16;H0YBZ1;Q05397-2;Q05397-4;Q05397-3 E7ESA6 PTK2 Focal adhesion kinase 1 1 Y(1)MEDSTYYK;Y(1)MEDSTYYK 202.28 0.0002072 322670000.0 409130.0 384530.0 357210.0 328750.0 307740.0 429160.0 422410.0 355500.0 571830.0 451820.0 True False 406927.28953861597 397328.84859670675 407502.06307502085 370369.7162925033 346928.8648821143 399493.1793339752 401976.41453709704 382029.2151924222 430910.1586294301 422984.46077743714 0.9620383897571357 0.9393462063982779 0.9633972423621427 0.8756106917303085 0.8201929315428417 0.9444630154963957 0.9503337635578203 0.9031755315319622 1.018737562693026 1.0 18.690245138323128 1.236190421899885 24.99257686182814 1.0093688274721844 0.9187171013125556 0.4167434689208612 0.04235958255508695 63.61772407329576 670744.9205314639 0.03663149658076126 0.010844664301147286 17.22623715544919 -1.236190421899885 -0.0906517261596288 Y(ph)SPSQNS(ph)PIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.475)S(0.294)PS(0.238)QNS(0.994)PIHHIPSR 168.64 2.2365e-05 15947000000.0 672780.0 731580.0 641640.0 635560.0 745430.0 734630.0 693900.0 507850.0 716940.0 726540.0 True False 669157.8272328842 755930.1980505505 731977.3347651415 716021.8308345646 840356.091990234 683846.757233008 660333.4060445823 545748.3458100471 540259.7435038096 680171.5951778109 0.983807368577267 1.1113816034216113 1.0761656910618085 1.0527076342365955 1.235506007525274 1.005403286584228 0.9708335524831164 0.8023686223876745 0.7942991846970242 1.0 19.37553923297922 2.12512788397749 2.3480198542485056 0.8492169350230592 1.0893311152105134 0.5702831289818068 0.08262145299180851 0.18714577226858245 2.037462839275919 0.03867045593584414 0.02388252313323624 133.39141636916366 -2.12512788397749 0.24011418018745423 Y(ph)T(ph)T(ph)T(ph)QQVVKLIGSHTISKVTVKIGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YTTTQQVVKLIGSHTISKVTVKIGDLK 27 3 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 4 Y(0.552)T(0.503)T(0.523)T(0.532)QQVVKLIGS(0.576)HT(0.562)IS(0.529)KVT(0.222)VKIGDLK 51.479 0.045709 28739000.0 16177.0 36072.0 33407.0 42377.0 46510.0 32186.0 35617.0 30045.0 21368.0 37044.0 True False 16089.904829433668 37272.63471401551 38110.415221150615 47741.92385498832 52432.77281363214 29961.057577694362 33894.069639847046 32287.110465418675 16102.142716530543 34679.820205036005 0.4639558317864977 1.0747643584554396 1.0989219377676138 1.3766485400652542 1.5119101686120666 0.8639334748726174 0.9773427151425987 0.9310057051775062 0.4643087138667542 1.0 15.081808798582804 1.8052697711083385 1.629379029688732 0.7534439040104268 1.100038090385204 0.14693253034209208 0.29378567184393045 0.6585642109498285 3.3526525954046544 0.2194506797151333 0.09153931008841007 63.86600800790435 -1.8052697711083385 0.34659418637477724 YAALSVDGEDENEGEDYAE ddPTM_BT-474_Trastuzumab_2h_R1 2 YAALSVDGEDENEGEDYAE 19 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ; 331.48 6.436399999999997e-75 610640000.0 560720.0 633810.0 597480.0 616170.0 601730.0 630040.0 610180.0 592790.0 637290.0 671610.0 False True 557701.1458218482 654905.982703764 681599.990610742 694177.0588226658 678356.7487668648 586486.8177546317 580663.2622860397 637026.9999266269 480238.4187484906 628747.2748057507 0.8870036788535554 1.0416044871225802 1.0840603497189232 1.1040637258223178 1.0789020898363986 0.932786258096824 0.9235241018983876 1.0131686059767562 0.7638019884807591 1.0 19.26212071626114 2.7277432379698228 23.80094324579394 0.934336127176571 1.0453684187737398 0.30517313591395456 0.08419487568058105 488.97431386608815 1075863.8362832654 0.02706374497260983 0.025776435933167936 534.2484095750394 -2.7277432379698228 0.11103229159716876 YAAVTQFEATDAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YAAVTQFEATDAR 13 0 E9PLK3;P55786;A6NEC2;E9PP11 E9PLK3 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein 0 136.7 1.1379e-05 0.0 50196.0 72123.0 56762.0 67899.0 61161.0 90265.0 69847.0 54963.0 64241.0 60360.0 False True 49925.75031329985 74523.57045572586 64753.59621585147 76495.00643815877 68949.49082035154 84025.19301095458 66468.23376854858 59064.618156458855 48409.66633529752 56507.773123204126 0.8835200460730692 1.3188198072014237 1.145923695748352 1.3537076796740228 1.2201771014762992 1.4869669846616342 1.1762670884875897 1.0452476693371022 0.8566903924836984 1.0 15.786161715660569 1.6411654132205133 2.862159513637056 0.9341148938696026 1.2436893202742123 0.39117081775892304 0.15203838644634562 0.21028096127121979 4.015641402174995 0.09540100971481731 0.03970445262083267 43.768877944877794 -1.6411654132205133 0.30957442640460975 YADLSHNR ddPTM_BT-474_Trastuzumab_2h_R1 5 YADLSHNR 8 0 P54136;P54136-2 P54136 RARS Arginine--tRNA ligase, cytoplasmic 0 ;;;; 166.3 0.00031929 1447740000.0 1986070.0 2358090.0 2432410.0 2130060.0 1609530.0 2039960.0 2283660.0 1735520.0 3100390.0 2224430.0 False True 1975377.2197931204 2436577.6001544953 2774872.1851132694 2399725.3776000254 1814494.1050682713 1898942.3667493148 2173190.641371622 1865033.3151919916 2336340.427597531 2082464.9729696617 0.9485764444701172 1.170044937985131 1.332494049662796 1.1523484950519673 0.8713203480588414 0.911872416293928 1.0435664799070223 0.8955892845258254 1.1219110323213912 1.0 20.98986079900962 3.3006865009010844 8.946265680869415 0.9659888599903224 1.166022094624057 0.3739563390339522 0.11112848661076467 0.30136864261587926 40.09393112639842 0.030873177812114367 0.041766944395753146 1998.418773557784 -3.3006865009010844 0.20003323463373457 YADLTEDQLPSCESLKDTIAR ddPTM_BT-474_Trastuzumab_2h_R1 4 YADLTEDQLPSCESLKDTIAR 21 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ;;; 228.15 1.6259000000000002e-25 8833700000.0 3137650.0 2851990.0 2792790.0 2654920.0 2555640.0 3653930.0 3675190.0 3118990.0 4423140.0 3533150.0 False True 3120757.2410256905 2946916.7630856377 3185990.556634154 2991032.599784919 2881085.6055349535 3401342.4195260336 3497407.019110807 3351744.871710302 3333116.4140394456 3307661.3421180984 0.9434935799767452 0.8909366643921733 0.9632154646744969 0.9042741352322295 0.8710340350895832 1.028322451338971 1.0573655091519143 1.0133277034836867 1.007695791463659 1.0 21.65738009976511 2.724900316203289 24.786221945469613 1.0244167798821597 0.9154048841388114 0.783340771147145 0.02804603244930602 310.6141058712431 563599.6272125185 0.008998647465055845 0.008527544675918966 530.7626040827848 -2.724900316203289 -0.10901189574334835 YADSPGAS(ph)SPEQPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YADSPGASSPEQPK 14 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 YADSPGAS(0.818)S(0.182)PEQPK 276.31 4.4618e-33 476990000.0 548040.0 486500.0 446210.0 416410.0 431120.0 538510.0 535540.0 491260.0 721370.0 540520.0 True False 545089.4135329678 502692.8584045399 509032.48947315244 469127.4633045207 486020.5765515604 501284.07121618744 509633.8842385291 527920.315767734 543598.0293627687 506023.55083754647 1.0772016690344972 0.9934179102385773 1.00594624228581 0.9270862245997107 0.9604702701032827 0.9906338754124893 1.0071347141748777 1.043272224966496 1.074254406663545 1.0 18.948845005375905 1.8823949595619605 2.8781865271622977 1.0441109758013136 0.9889827798482604 0.2121694251623294 0.03950750747470569 0.3716017256635453 5.4558138078691645 0.02191560743061221 0.011407847082546637 76.27723812529331 -1.8823949595619605 -0.05512819595305318 YADSPGASS(ph)PEQPK ddPTM_BT-474_Trastuzumab_2h_R1 3 YADSPGASSPEQPK 14 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 YADSPGAS(0.12)S(0.88)PEQPK;YADSPGAS(0.184)S(0.816)PEQPK;YADSPGAS(0.048)S(0.952)PEQPK 350.86 6.852199999999996e-82 1408560000.0 2802290.0 2497700.0 2239600.0 2147250.0 2226940.0 2961370.0 2751070.0 2749970.0 4013170.0 2888580.0 True False 2787202.78200369 2580834.4346084655 2554916.213047834 2419091.6298375004 2510527.608892494 2756657.462215151 2617990.2339920243 2955186.7254647156 3024178.027222894 2704228.3513622405 1.0306832189669382 0.9543700084752029 0.9447856767572194 0.8945589334639199 0.9283711590509097 1.0193878267811591 0.9681098982167041 1.0928022124966097 1.1183145926635525 1.0 21.366785550629217 1.7738800325880741 5.293555633943882 1.0789665637185346 0.9594516735477505 0.5192589839040063 0.04707046979014223 0.13936219149259552 8.454826535324068 0.023486797875972368 0.012721228586559804 59.41280168894282 -1.7738800325880741 -0.1195148901707841 YADSPGASS(ph)PEQPKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YADSPGASSPEQPKR 15 1 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 YADSPGAS(0.231)S(0.769)PEQPKR;YADSPGAS(0.169)S(0.831)PEQPKR 166.36 8.405799999999998e-07 1293860000.0 906340.0 858130.0 774990.0 768910.0 821270.0 987310.0 922970.0 926210.0 1307950.0 934780.0 True False 901460.3661438401 886692.3382994611 884101.8556661623 866253.9271618805 925853.8664513357 919059.5835777484 878322.4150122027 995328.493399082 985623.2481320722 875121.5400945788 1.0300973348758102 1.0132219328113348 1.0102617924027022 0.9898669927245307 1.0579717491027292 1.050207932807163 1.0036576347066923 1.1373602954528028 1.1262701270334987 1.0 19.73912387208447 1.7470688705952548 24.99999999999996 1.0998801829625053 1.0225917239370286 0.3529880396441043 0.03977084948375777 1.7340432629936946 5107.671593398193 0.017560458772706657 0.00973824730429747 55.85587641895438 -1.7470688705952548 -0.07728845902547676 YADVIVHR ddPTM_BT-474_Trastuzumab_2h_R1 3 YADVIVHR 8 0 Q9Y2L1;G3V1J5;Q9Y2L1-2 Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 0 ;; 114.93 0.0025611 418300000.0 555680.0 684180.0 630750.0 682970.0 675240.0 638980.0 636020.0 581520.0 721060.0 691020.0 False True 552688.2806218519 706952.5177044566 719554.1174227187 769433.9319735079 761227.8115389588 594808.8165971278 605253.2827676532 624915.9752987274 543364.4247089806 646918.5119880132 0.8543398749301716 1.0927999502316852 1.1122793738140104 1.1893830794994544 1.1766981427068262 0.9194493673851601 0.9355943160564063 0.9659887044789136 0.8399271541004358 1.0 19.303224471423146 2.7217479897353094 24.30212185982627 0.933402309308504 1.0928313147962885 0.39773616160208436 0.09383310306995955 584.0280514472894 844192.5389395882 0.031018682356541597 0.029323962702203617 526.9240118204951 -2.7217479897353094 0.1594290054877845 YAEAVTR ddPTM_BT-474_Trastuzumab_2h_R1 4 YAEAVTR 7 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 ;;; 141.83 0.0058871 3484150000.0 2565660.0 2893600.0 2527740.0 2604920.0 2484360.0 3013450.0 2863000.0 2408910.0 3148380.0 3062800.0 False True 2551846.7716316264 2989911.7267818637 2883623.8204900543 2934702.6049115323 2800728.5200446146 2805137.2943982827 2724505.752277904 2588675.0963971233 2372503.9351305882 2867329.481804993 0.8899733315702634 1.0427513635090533 1.0056827576978715 1.0234968194391556 0.9767724769047285 0.9783100659336993 0.9501892857331552 0.9028174518568212 0.8274263387537485 1.0 21.4512762619928 2.0146246812122075 2.126719834793253 0.8996734095679251 0.9920892809411131 0.2729058177928485 0.05461800493138078 0.3467992134846646 2.9411817356706984 0.02887210804205205 0.015481225041651185 103.42479796873035 -2.0146246812122075 0.09241587137318807 YAEEDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 YAEEDRR 7 1 P38646;H0Y8S0 P38646 HSPA9 Stress-70 protein, mitochondrial 0 ; 97.068 0.019673 965400000.0 1504790.0 1197780.0 1180140.0 958600.0 1159670.0 1690640.0 1045230.0 927690.0 1900560.0 1193570.0 False True 1496688.3778378866 1237647.3832266997 1346293.454039232 1079958.6617125287 1307347.100597392 1573770.036138484 994668.231733647 996918.9385143697 1432192.4541992354 1117395.3407333132 1.3394439042994888 1.1076181706775943 1.204849711612096 0.9664964783223313 1.1699951243213698 1.408427240358516 0.8901667972598453 0.8921810411882705 1.2817240254996323 1.0 20.09170827905401 7.999999999999999 0.2802055167333629 1.0265811651550818 2.9051226616479275 0.13421550783618885 0.1637398947723426 103.12198031027528 1.458297749948536 0.18834804647162284 94.86929348832258 99999999.99999979 -7.999999999999999 1.8785414964928457 YAEIVHLTLPDGTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 YAEIVHLTLPDGTKR 15 1 P21281;H0YC04 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform 0 130.98 3.6608e-05 246930000.0 342000.0 412350.0 402600.0 399600.0 426270.0 455660.0 444590.0 398900.0 551680.0 446070.0 False True 340158.70999977237 426074.82047916105 459282.5805380673 450189.3190280888 480552.957799763 424161.2967082647 423083.4832012696 428667.9435731571 415725.8561332631 417601.43070025963 0.8145535072266716 1.020290614820674 1.0998108406092244 1.0780358637018648 1.1507454775572545 1.0157084375812724 1.0131274753820103 1.0265001794997217 0.995508696979674 1.0 18.67176712901854 4.727524385023181 3.986049991243422 1.0495271674396809 0.7956581041422242 0.6859249832742023 0.04693127838122579 0.13094507905664213 4.353895448491816 0.012005799260565417 0.09463189678989027 53397.925491518065 -4.727524385023181 -0.25386906329745673 YAELLEEHR ddPTM_BT-474_Trastuzumab_2h_R1 4 YAELLEEHR 9 0 P40222 P40222 TXLNA Alpha-taxilin 0 ;;; 172.94 5.581e-05 720540000.0 629562.0 720480.0 683960.0 660385.0 630095.0 650015.0 666701.0 620592.0 835716.0 683346.0 False True 626172.5081429145 744460.741260642 780255.6229131063 743989.6732892003 710333.8633843368 605080.993020724 634450.1255848518 666903.7263423232 629764.9898206684 639734.2732380562 0.9788009402302335 1.1637030754855542 1.2196558095344685 1.1629667260493153 1.1103576798987747 0.945831759111588 0.9917400897931288 1.0424699038973588 0.984416524431421 1.0 19.28711325097219 2.878846489323631 5.276527444869618 0.9997872231804557 1.1394999675484767 0.5371760705909002 0.06208737516768654 0.18331684382611388 7.176461326645497 0.01966841459687936 0.02099353408336036 756.5654235163204 -2.878846489323631 0.13971274436802106 YAETFLEPWFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YAETFLEPWFK 11 0 Q9NXG2 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 0 ; 174.41 2.5664e-05 228057000.0 419130.0 428350.0 411320.0 354490.0 425340.0 476000.0 437340.0 430610.0 598240.0 486030.0 False True 416873.4506497207 442607.37080695713 469230.280742469 399368.3976533218 479504.5278123047 443095.2403834747 416184.19339895906 462744.30479327415 450811.768005299 455011.14928878215 0.9161829359595393 0.9727396163781633 1.0312500726101161 0.8777112347193375 1.0538302820970598 0.9738118309322025 0.9146681219778622 1.0169955297064248 0.9907708167370247 1.0 18.795542371015323 4.720813798355897 4.828715698267367 0.981067587994226 0.913438015168044 0.13527246984023666 0.0497184978428825 0.31592821151702954 20.65384986401385 0.011179962526227195 0.06877606518112642 52579.17873894094 -4.720813798355897 -0.06762957282618198 YAGGVAEYR ddPTM_BT-474_Trastuzumab_2h_R1 1 YAGGVAEYR 9 0 A0A087WWM4;Q9P2T1;Q9P2T1-3;F8WAN9;H0YNJ6;Q9P2T1-2;H0YMB3;H0YLV5;H0YLB8;H0YK13;H0YK71 A0A087WWM4 GMPR2 GMP reductase;GMP reductase 2 0 100.19 0.010443 0.0 109700.0 136230.0 112060.0 124920.0 117460.0 119370.0 133570.0 114420.0 145180.0 127790.0 False True 109109.38738881586 140764.333197226 127837.07395701899 140734.8591916639 132417.83476003518 111118.23286675513 127108.70881304897 122958.60141298715 109402.33431233159 119634.33279347667 0.9120240389284412 1.176621542581976 1.068565109797558 1.1763751751314804 1.1068547938377065 0.9288155855608542 1.0624768479502888 1.0277869115151845 0.9144727249926786 1.0 16.868271949615558 2.7629197358816495 24.629264388076237 0.9979910390655043 1.0968268906725813 0.2765295392115673 0.08034755933277458 860.3979077294803 869937.9556905822 0.023587396892683143 0.025006013569868597 579.321619229167 -2.7629197358816495 0.09883585160707697 YAHQSGFHVDR ddPTM_BT-474_Trastuzumab_2h_R1 6 YAHQSGFHVDR 11 0 A0A0A0MSX9;P41252;Q5TCD1 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;;;;; 188.91 1.7019e-06 1741010000.0 368781.0 771453.0 867731.0 972482.0 967067.0 713101.0 834841.0 386636.0 681808.0 752121.0 False True 366795.52407142124 797130.3467518137 989899.9823469393 1095598.1214891744 1090217.250194815 663806.0063291943 794456.551427677 415488.74161782727 513785.55415912863 704119.993856816 0.5209275794915288 1.132094463594953 1.405868305094937 1.5559821210132634 1.54834014046832 0.942745571948892 1.1282971061168747 0.5900822945560578 0.729684654095489 1.0 19.42546178368364 2.0726129866782816 2.053760994141813 0.7449793702784622 1.2384293140204634 0.24911587456118334 0.30656613899608465 0.4100262647964728 3.308735847093008 0.17397876699532894 0.09747574456797746 118.19877801917151 -2.0726129866782816 0.49344994374200124 YAHVVLR ddPTM_BT-474_Trastuzumab_2h_R1 6 YAHVVLR 7 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 ;;;;; 140.01 0.0026531 4146550000.0 4399770.0 5028420.0 4602360.0 4903820.0 4658660.0 5059540.0 4792320.0 4144310.0 5698490.0 4942400.0 False True 4376082.1271804 5195787.919955921 5250332.283569756 5524643.10920001 5251912.736958836 4709785.9086760655 4560497.173159783 4453579.456579769 4294173.495353895 4626971.800598475 0.9457767014301613 1.1229348575852294 1.1347232077123643 1.194008381137189 1.1350647817390043 1.017898122497068 0.985633232640386 0.9625257400539422 0.9280742741502046 1.0 22.141636875648885 2.5259956494693716 2.9356399181618222 0.9666922452982614 1.1134792617349478 0.5199486789749639 0.06235235183122934 0.2104393723528086 3.6224888330481537 0.023214006214436204 0.02052960972326737 335.7342510193384 -2.5259956494693716 0.14678701643668646 YALPLVGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YALPLVGHR 9 0 P13667;A0A499FI48 P13667 PDIA4 Protein disulfide-isomerase A4 0 ; 136.16 0.00020068 4262400000.0 2722800.0 3873400.0 3398300.0 3506300.0 3197600.0 3521000.0 3632100.0 3148700.0 4294300.0 3397500.0 False True 2708140.7473315215 4002323.777480256 3876751.1014468856 3950197.220490965 3604795.406339927 3277601.5575424666 3456401.4470305857 3383671.98277463 3236027.3056718926 3180668.6412539063 0.8514375600797883 1.2583278011325414 1.2188478394651525 1.2419392480109748 1.1333451588087524 1.0304756412005076 1.0866902016137017 1.063824108832882 1.0174047254404226 1.0 21.600898650563362 2.8431021628399447 4.806396753539869 1.0493781990708213 1.1595012119483483 0.1650089749045841 0.10981367051108325 0.39159042574968894 14.362859720485725 0.03339285475504753 0.0355210295781744 696.7904068553789 -2.8431021628399447 0.11012301287752702 YALQMEQLNGILLHLESELAQTR ddPTM_BT-474_Trastuzumab_2h_R1 5 YALQMEQLNGILLHLESELAQTR 23 0 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;; 309.55 2.9631999999999986e-73 23562042000.0 6095080.7 7668496.0 6973163.5 7722369.0 7284579.0 7712160.0 6869497.0 6821112.5 7630962.0 7358782.0 False True 6062265.462738334 7923737.253656283 7954924.308976311 8700020.123607667 8212226.956567528 7179036.531671895 6537193.186083064 7330138.551657445 5750413.664752029 6889138.232589764 0.8799744261278103 1.1501782931531617 1.154705282490158 1.2628604376743877 1.192054314967692 1.0420804880515735 0.9489130520212546 1.0640138583635155 0.8347072551903686 1.0 22.715892095747712 2.5131821155074743 4.607545214593261 0.9780336900380292 1.1375297254945054 0.34219753853027257 0.10718091423693442 0.24877576870503365 12.424308849414668 0.03697204242956304 0.033385542662239746 325.97336486043696 -2.5131821155074743 0.15949603545647617 YALTGDEVKK ddPTM_BT-474_Trastuzumab_2h_R1 4 YALTGDEVKK 10 1 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 0 ;;; 149.23 3.8019e-05 2470070000.0 4101040.0 3659700.0 3250810.0 2937160.0 2918770.0 4160610.0 4064870.0 4018040.0 6086180.0 4237190.0 False True 4078960.4563083746 3781510.90216463 3708495.7914529424 3309004.154846203 3290458.0585948154 3872996.8237224594 3868236.7087886394 4317886.5479937075 4586322.489633743 3966768.906559127 1.02828285498652 0.953297505158879 0.9348908088194589 0.8341812272892183 0.8295058613457369 0.9763605884170329 0.9751605903717853 1.0885147710152716 1.1561859532704748 1.0 21.919532921666868 1.9519247007271354 2.060716378258011 1.0930058473925264 0.9176599254496087 0.519756980928723 0.06653787800432176 0.25187531784646255 1.9762763353969983 0.04123524179463831 0.02070644911841665 89.52095379927779 -1.9519247007271354 -0.17534592194291765 YALYDASFETK ddPTM_BT-474_Trastuzumab_2h_R1 1 YALYDASFETK 11 0 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 204.52 7.657300000000001e-08 192670000.0 223090.0 211800.0 230930.0 211110.0 183890.0 265800.0 258920.0 245750.0 337980.0 282730.0 False True 221888.9082276289 218849.63496419642 263442.9367204573 237836.50435440431 207307.30149857685 247425.87162589838 246395.05042954776 264089.1128932147 254689.3576999713 264685.9293426689 0.838310176814749 0.8268276122863649 0.995303896110766 0.8985611926748676 0.7832199543565148 0.9347904221443323 0.9308959151755992 0.9977451901166927 0.962232326941128 1.0 18.013921977894576 2.1982728244995378 2.0524716098034825 0.9832716117014054 0.8752741459708024 0.4433418755203431 0.05515841179974403 0.3266747095490636 2.755732118837656 0.028103291248614503 0.017835054028559456 157.86026390209076 -2.1982728244995378 -0.10799746573060298 YALYDATYETK ddPTM_BT-474_Trastuzumab_2h_R1 6 YALYDATYETK 11 0 G3V1A4;E9PQB7;E9PLJ3;P23528;E9PP50;E9PK25;Q9Y281;Q9Y281-3 G3V1A4;P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 ;;;;; 259.82 2.9988e-20 8574580000.0 5794320.0 5730280.0 5592560.0 4879390.0 4868780.0 6458280.0 6674570.0 5964830.0 7894530.0 6194360.0 False True 5763124.024929476 5921008.905772593 6379943.836597061 5497120.273704867 5488790.273480029 6011834.30475586 6351695.549766506 6409955.903393014 5949028.862782278 5799030.64154159 0.9938081691869507 1.0210342506827272 1.10017418961267 0.9479377871063526 0.9465013400965427 1.0366964198619408 1.095302981202734 1.105349548849602 1.0258660853015968 1.0 22.467380330681788 2.476632602394924 21.622352640901067 1.070161358865329 1.00403555532039 0.1945476026970454 0.04984810429796534 4.210431571361563 186168.9977794147 0.01784049906692738 0.015110632849002614 299.6626407601728 -2.476632602394924 -0.06612580354493902 YAPLHLVPLIER ddPTM_BT-474_Trastuzumab_2h_R1 1 YAPLHLVPLIER 12 0 Q7L576;Q7L576-2;Q7L576-3;Q96F07;Q96F07-2;E7EVJ5;H7C229;H0YL50;E7EW33 Q7L576 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 0 82.36200000000002 0.015157 507050000.0 247350.0 347550.0 322940.0 307930.0 267070.0 281170.0 304800.0 236090.0 380560.0 274080.0 False True 246018.2950831684 359117.9916515888 368407.1449551999 346913.90642722603 301079.7814520906 261733.3797029868 290055.65955092706 253708.23464072857 286776.0872427396 256587.97974830653 0.9588067816913863 1.3995900821381286 1.435792687235698 1.352027116654188 1.1733978409566463 1.0200531605561862 1.1304335449986775 0.9887767731348803 1.1176520721042558 1.0 17.969094061217884 3.001750516079042 3.7122682154305457 1.0534670423903973 1.304168427198237 0.4209098981074949 0.1291677781908746 0.20784704785671781 6.289752139453866 0.03939995382091487 0.0453403696980268 1004.0388464744465 -3.001750516079042 0.25070138480783966 YAPSEAGLHEMDIR ddPTM_BT-474_Trastuzumab_2h_R1 3 YAPSEAGLHEMDIR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 ;; 118.13 0.00026343 872520000.0 1099835.0 1262555.0 1082444.0 1235613.0 1049260.0 1258053.0 1086519.0 1052485.0 1407840.0 1293332.0 False True 1093913.6105631553 1304578.3799443855 1234842.706428088 1392041.479109746 1182877.0415487357 1171086.757248219 1033959.9250643501 1131026.7751105395 1060896.6960894964 1210790.4444827659 0.9034706340373053 1.0774600888939825 1.0198649254748595 1.1496964528031175 0.9769461321228428 0.9672084567437202 0.8539544805427041 0.9341226471222274 0.8762017415348019 1.0 20.2075177639467 2.7441577026239994 2.551842876802425 0.912819137255108 1.0392568655992331 0.35264098245558706 0.06963824413532516 0.27639044817186864 3.5701456378335106 0.022904453050705844 0.022902954474568096 554.8271472756727 -2.7441577026239994 0.12643772834412514 YAQVKPDGTYVKPLSNK ddPTM_BT-474_Trastuzumab_2h_R1 1 YAQVKPDGTYVKPLSNK 17 2 Q15067-2;Q15067;Q15067-3 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 92.307 0.0018791 1234800000.0 796240.0 845700.0 734200.0 681640.0 766650.0 941300.0 988700.0 866060.0 1241000.0 847610.0 False True 791953.1323105814 873848.6132635553 837568.9782191989 767935.5541098772 864278.33320944 876230.14658186 940872.8037992181 930689.7949635715 935172.178548034 793514.8041245707 0.9980319562963766 1.101237946313568 1.0555177721520017 0.9677646215524445 1.0891773268968028 1.1042391925485793 1.185702899188147 1.1728701091976934 1.1785188804130051 1.0 19.597897613234977 2.736340745108438 2.3611300844309357 1.1508810603950048 1.0380824453993154 0.3301054184903097 0.061608689342186385 0.28867710190924606 3.1780183102702266 0.020705287946679394 0.020557169447645515 544.9300343261266 -2.736340745108438 -0.11279861499568944 YASICQQNGIVPIVEPEILPDGDHDLK ddPTM_BT-474_Trastuzumab_2h_R1 4 YASICQQNGIVPIVEPEILPDGDHDLK 27 0 H3BPS8;P04075;P04075-2;H3BQN4;P09972 H3BPS8;P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C 0 ;;; 207.88 2.2399000000000003e-25 9712960000.0 2356970.0 1783340.0 1727290.0 1469120.0 1407010.0 2385200.0 2181900.0 1923300.0 2785120.0 2150780.0 False True 2344280.3354039825 1842697.3938482061 1970477.4181261768 1655110.4413677328 1586184.383498356 2220316.7381568565 2076353.1613325714 2066826.4123195114 2098764.49469597 2013515.3790246018 1.164272376474031 0.9151643007270477 0.978625462041778 0.8220003972204625 0.7877686954974956 1.102706620116522 1.0312079971986159 1.0264765960321272 1.0423384477513478 1.0 20.941285060807143 2.7080599371439766 24.99525175170452 1.0400662436958135 0.9288490404520234 0.23037834211163932 0.0975740044319723 1042.128580839819 854021.7070709348 0.0322787528590815 0.030435529424351702 510.575459823486 -2.7080599371439766 -0.11121720324379003 YASICQQNGIVPIVEPEILPDGDHDLKR ddPTM_BT-474_Trastuzumab_2h_R1 4 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 H3BPS8;P04075;P04075-2;H3BQN4;P09972 H3BPS8;P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C 0 ;;; 184.0 7.3671e-18 26440600000.0 8544880.0 7512120.0 6819950.0 6687330.0 6100840.0 9238700.0 9560080.0 7637150.0 11943970.0 9573470.0 False True 8498875.315505415 7762156.37302757 7780139.679931928 7533945.292332614 6877745.811488264 8600050.41456052 9097622.407347873 8207072.913661912 9000538.634498287 8962482.948339976 0.9482724111714567 0.8660720938348083 0.8680786033041167 0.8406091633042432 0.7673929034098921 0.9595611466299541 1.0150783504735066 0.9157142011837266 1.0042461097418722 1.0 23.095467038327698 2.5753655500903694 8.915547907986426 0.973507419041774 0.8582506025100876 0.6081671223362102 0.048524863438561126 0.26095448888670525 21.806732629137304 0.015977939178487967 0.015048246594998236 376.1538836342362 -2.5753655500903694 -0.1152568165316864 YATDTFAGLCHQLTNALVER ddPTM_BT-474_Trastuzumab_2h_R1 2 YATDTFAGLCHQLTNALVER 20 0 Q9UNS2-2;Q9UNS2;H7C3P9;J3QKR0;K7ES36;C9JLV5 Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 0 ; 271.91 2.0620999999999998e-44 924900000.0 509070.0 541830.0 535700.0 574200.0 567440.0 609450.0 609890.0 515470.0 640920.0 667400.0 False True 506329.22368299396 559864.4840068485 611121.9036121289 646893.6611259469 639700.120519617 567320.1559909845 580387.2906939478 553936.9889036234 482973.8538879981 624805.960610113 0.810378350405895 0.8960613683328978 0.9780987092622775 1.035351296095616 1.0238380566903684 0.9079941481944338 0.9289080567144541 0.886574430824432 0.7729981535649594 1.0 19.253048691203567 -0.6418372932053805 7.615429790659242 0.9999841984917053 0.9214374847490086 0.0881737807356815 0.07945879880944477 0.0 0.0 0.0808997631294745 0.019068257035078955 0.2281196553637367 0.6418372932053805 -0.07854671374269673 YAVAVLGYYNR ddPTM_BT-474_Trastuzumab_2h_R1 1 YAVAVLGYYNR 11 0 Q9UKX5;Q9UKX5-2 Q9UKX5 ITGA11 Integrin alpha-11 0 60.518 0.093137 113830000.0 52208.0 146570.0 138750.0 173560.0 128530.0 84069.0 87805.0 69470.0 46421.0 83846.0 False True 51926.91792885411 151448.49384656394 158284.7939633802 195532.67820449243 144897.53364300448 78257.50790713941 83557.53670232678 74654.20416151219 34981.16655953127 78494.87649582785 0.6615325769907304 1.9294061040355126 2.0164984140307975 2.491024725860743 1.8459489346506082 0.9969759989532432 1.06449669624957 0.9510710443054229 0.4456490426020428 1.0 16.260310869282513 2.712901524902028 4.7914495078080765 0.899306720372204 1.8516884760882144 0.4870162885532171 0.4589739401908103 0.17210986549761276 10.630361697163032 0.15305402472445986 0.14894057201551672 516.299286533072 -2.712901524902028 0.9523817557160104 YAVTTGDHGIIR ddPTM_BT-474_Trastuzumab_2h_R1 4 YAVTTGDHGIIR 12 0 P53621;A0A3B3IT15;P53621-2;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin 0 ;;; 256.63 3.5595e-21 2714340000.0 1095030.0 1502660.0 1516930.0 1304050.0 1322470.0 1322550.0 1330420.0 1235620.0 1611750.0 1360920.0 False True 1089134.4801492707 1552675.1297228495 1730500.5586080763 1469142.59629274 1490878.7156061954 1231125.2314478236 1266062.5019020508 1327828.2387512259 1214555.8088435088 1274064.9204577683 0.8548500650641472 1.2186781888359168 1.3582514759030584 1.1531143921338647 1.170174840910404 0.9662970949749432 0.9937189868214548 1.0421982564861298 0.9532919314716883 1.0 20.281007361860446 2.7445851308898503 24.054653388836297 0.9979218269977873 1.1664028437912886 0.30601453284994595 0.11906674395048006 357.96927587248695 1429298.0510235024 0.03731986008950425 0.03861753578898581 555.3734713790725 -2.7445851308898503 0.16848101679350125 YAVWFGGSMLASTPEFYQVCHTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YAVWFGGSMLASTPEFYQVCHTK 23 0 B4DXW1;P61158 B4DXW1 ACTR3 Actin-related protein 3 0 221.86 1.7085999999999998e-32 142930000.0 162790.0 182050.0 165830.0 163560.0 164980.0 199570.0 205980.0 178930.0 243040.0 176300.0 False True 161913.55672766926 188109.42419845122 189177.42257980056 184266.6792298154 185989.22508692837 185774.19563724787 196015.96047998677 192282.66518813002 183146.04856914925 165048.38306197608 0.9810066219604848 1.1397229146305279 1.1461937346503053 1.1164403783381676 1.1268769898647777 1.1255741631076095 1.187627269310371 1.16500786994034 1.109650668315711 1.0 17.332529479341428 4.739844898805575 24.726681937020228 1.1341272910294802 0.9810065637918901 0.43233715896726954 0.047979738895466265 77.24378525584348 1487013.1970297566 0.010597662042479583 0.06622472910457863 54934.464933431795 -4.739844898805575 -0.15312072723759007 YAWQGVALLPFVDER ddPTM_BT-474_Trastuzumab_2h_R1 2 YAWQGVALLPFVDER 15 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 174.73 2.0849e-06 206833000.0 250250.0 325590.0 355520.0 312190.0 297420.0 295910.0 336290.0 292300.0 387190.0 291750.0 False True 248902.68180538897 336427.0663266885 405574.12576476356 351713.22199043777 335294.6740535469 275454.43819721445 320022.36794744554 314112.91026932496 291772.2125801878 273130.2652202585 0.9112965990959228 1.2317458340084941 1.4849109652410701 1.287712373093506 1.2275998552674403 1.0085093937688732 1.1716840229674736 1.150047981742401 1.0682529537504606 1.0 18.05922966061596 2.8840913045756253 7.061198789041369 1.1018969941042736 1.2485844655565241 0.2054186367612827 0.14102936771892016 0.4424937924499595 24.324541578955348 0.04470424963845239 0.047532922632332296 765.7575802248716 -2.8840913045756253 0.14668747145225058 YAYDKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YAYDKR 6 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 ; 94.151 0.07184700000000001 1233750000.0 1179370.0 1341100.0 1577550.0 1051040.0 645100.0 934690.0 1276180.0 828230.0 2296500.0 1175580.0 False True 1173020.4029603244 1385737.7027879313 1799655.3276895909 1184101.5562344405 727249.6611927351 870077.0803235926 1214446.2979189719 890036.728266724 1730558.3465234148 1100553.477935327 1.065845891615324 1.2591280029277805 1.6352275139467107 1.075914601129472 0.6608035645456124 0.7905813736156508 1.103486856629004 0.8087173827631357 1.5724436669538284 1.0 20.06979781948556 3.4902892540081645 24.35647448862726 0.9588509050608272 1.320906241375683 0.2322301753627406 0.26579428248613907 572.1473065395975 1058283.1142851633 0.07076239999750866 0.1042610033081745 3092.354353637542 -3.4902892540081645 0.36205533631485576 YCDAVFHER ddPTM_BT-474_Trastuzumab_2h_R1 1 YCDAVFHER 9 0 A0A2R8Y595;A0A2R8YFL0;P49711-2;P49711 A0A2R8Y595 CTCF Transcriptional repressor CTCF 0 99.855 0.0051769 0.0 109230.0 177810.0 174530.0 139550.0 144260.0 159730.0 148620.0 141180.0 191260.0 162460.0 False True 108641.91781659388 183728.29836158518 199102.30695804505 157217.01569161616 162630.65590399003 148688.2410639756 141430.68281646614 151715.56849751374 144126.53575269715 152091.6637109963 0.7143186889127245 1.2080103135087314 1.309094148226152 1.033699098659076 1.0692936873451517 0.9776225562665429 0.9299042390989417 0.9975271806205157 0.9476294244934131 1.0 17.214581554176426 2.828595200021546 2.460916901707335 0.9677560871655987 1.0920156795267044 0.08943292831460348 0.14503792832110085 0.6322726312474497 7.510574602245733 0.049351957277174674 0.05196815545599881 673.8996022184795 -2.828595200021546 0.12425959236110573 YCDPDSYHR ddPTM_BT-474_Trastuzumab_2h_R1 6 YCDPDSYHR 9 0 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ;;;;; 188.66 3.9117e-05 10448970000.0 9291320.0 11327550.0 10512510.0 11277640.0 10073110.0 11257480.0 10452790.0 9465740.0 12301800.0 10785870.0 False True 9241296.565482697 11704580.65410142 11992580.031625053 12705388.067677528 11355860.850499365 10479276.904857486 9947148.614164507 10172121.58485379 9270186.22567462 10097506.542352123 0.9152058012264501 1.1591555405296072 1.1876773717674156 1.2582698525014198 1.124620301345615 1.0378083798117979 0.9851094002705552 1.0073894522562286 0.9180668699537394 1.0 23.267495745000335 2.5904144607488355 2.6567399900914923 0.9822078985470695 1.1418241916295788 0.41088610328767294 0.08519144015745836 0.28204307135018103 3.8924135950604204 0.031532918873672905 0.02875031354066705 389.4166001091537 -2.5904144607488355 0.15961629308250935 YCDPDSYHRR ddPTM_BT-474_Trastuzumab_2h_R1 4 YCDPDSYHRR 10 1 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ;;; 113.93 0.00092398 1669640000.0 586758.0 976360.0 929660.0 1078970.0 954180.0 898550.0 940110.0 821510.0 1126350.0 951790.0 False True 583598.9601229426 1008857.5523779166 1060548.047250422 1215567.4913707147 1075689.1671320472 836435.3534591836 894633.2877310436 882815.2477432552 848776.1348167433 891045.9473315834 0.6549594461100994 1.1322172054080306 1.1902282373052107 1.3642029291654112 1.2072207615706185 0.9387118093786946 1.0040259881212672 0.9907628786001702 0.9525615792974251 1.0 19.76514030155808 2.72963771939394 24.07246565063932 0.9800629370599668 1.1296185628494269 0.12493153500384879 0.17134349998003012 798.6519891120913 2154623.316040242 0.05712863540993923 0.054651438405296834 536.584000951036 -2.72963771939394 0.14955562578946002 YCFPNYVGRPK ddPTM_BT-474_Trastuzumab_2h_R1 2 YCFPNYVGRPK 11 1 P61163;R4GMT0;A0A1B0GVS3;P42025 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin 0 ; 185.29 4.1316e-06 1654510000.0 1769590.0 1892190.0 1975790.0 1788490.0 1732690.0 2189990.0 2019820.0 1962330.0 2909700.0 2306400.0 False True 1760062.7240599338 1955170.4002969922 2253964.0581254587 2014912.6506219879 1953337.8010417598 2038601.145981945 1922113.5901382996 2108769.0291098375 2192643.422982443 2159203.577391616 0.8151444090261019 0.9055053542746061 1.0438867746080323 0.9331740053228625 0.9046566157515594 0.9441449464643059 0.8901956305853622 0.9766420596881814 1.015487120316475 1.0 21.042067841516154 4.6028738906791915 3.820711112493293 0.9569492475870289 0.8167945935346212 0.4853418567812391 0.046449685482748894 0.20630258500394433 4.797971300964569 0.011350323918471537 0.06023430134950889 40075.03318738991 -4.6028738906791915 -0.14015465405240768 YCGDYDSFFESK ddPTM_BT-474_Trastuzumab_2h_R1 1 YCGDYDSFFESK 12 0 Q9UJC5 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 0 138.99 0.00059809 0.0 114220.0 126790.0 102230.0 117260.0 118450.0 134440.0 125410.0 119760.0 153650.0 142720.0 False True 113605.05221103507 131010.12850382659 116623.09540091082 132105.10397706126 133533.90539184533 125146.47923771922 119343.43918727615 128697.0993289579 115785.01630451689 133611.48741126072 0.8502641083648358 0.9805304247573634 0.8728523097863655 0.9887256443036012 0.9994193461885759 0.9366446079034663 0.8932124138393353 0.9632188206454423 0.8665798019905777 1.0 17.02768452505419 4.754036955869139 24.4813767618076 0.9426193430269546 0.850264017582846 0.25221515539948614 0.0486131193930117 3120.9741952266886 4936828.806266216 0.01100596207755509 0.2640577962936378 56759.290212299486 -4.754036955869139 -0.09235532544410863 YCHDLGER ddPTM_BT-474_Trastuzumab_2h_R1 2 YCHDLGER 8 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 ; 104.06 0.0064024 409520000.0 186222.0 212822.0 197831.0 186118.0 219060.0 214760.0 199126.0 175473.0 261330.0 234700.0 False True 185219.40144320912 219905.6516163843 225683.8852221224 209680.51971689134 246955.992529655 199914.146690662 189493.5146448095 188567.68629383933 196928.72314259305 219721.24506322065 0.842974476090902 1.0008392750237265 1.0271372946079298 0.9543024374204676 1.1239513614561853 0.9098535129506501 0.862426910926553 0.8582132612601141 0.8962661898531047 1.0 17.745314846544417 2.5001293109245966 24.82386048906147 0.8874841148373964 0.9931849268594881 0.22774488233466217 0.07523817902919926 824.6278194916015 889707.4483389226 0.023621221262750066 0.02212446914351098 316.32193666568475 -2.5001293109245966 0.1057008120220917 YCLDNGAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YCLDNGAK 8 0 P07205 P07205 PGK2 Phosphoglycerate kinase 2 0 78.324 0.060113 0.0 336270.0 345190.0 290640.0 323280.0 340630.0 403150.0 399550.0 275370.0 412480.0 438940.0 False True 334459.55968310934 356679.4404782382 331559.58571183315 364207.2148533549 384007.21142781194 375281.18941302097 380222.24007077795 295919.5077005273 310829.83094882563 410926.47340455925 0.8139158251647423 0.8679884688935227 0.8068586649208435 0.8863074988473449 0.9344912929222616 0.9132562969326016 0.9252804690839356 0.7201276307384388 0.7564122807021295 1.0 18.648520751691414 -0.9643913337390309 4.175599968473354 1.0000070894302429 0.8464182581515677 0.30817537578937637 0.06868160234102777 8233174.936942939 3943888.465897904 507.758642412019 0.017774877720229062 0.10854471089742918 0.9643913337390309 -0.15358883127867518 YCLHGEAGK ddPTM_BT-474_Trastuzumab_2h_R1 1 YCLHGEAGK 9 0 Q29RF7;Q29RF7-3;H0Y9L9 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 0 120.15 0.00071093 87852000.0 298410.0 284760.0 276090.0 260300.0 196340.0 302600.0 323350.0 272300.0 473290.0 317220.0 False True 296803.39371646754 294238.06445894507 314961.0721827 293253.9533108399 221342.73520164558 281681.97424378066 307708.3251830461 292620.4087113831 356654.0212610788 296974.74801429425 0.9994230004437331 0.990784793745435 1.0605651634984803 0.9874710064463956 0.745325104850301 0.9485048009207251 1.0361430634776907 0.9853376782638046 1.200957400067941 1.0 18.179980737235983 1.3883106073674345 7.053474623815216 1.1013683606173241 0.9677578379017641 0.24537599553288392 0.09239200951857869 0.3158280594838357 20.238473671113855 0.06444783758491555 0.023619054574197773 24.451787190359994 -1.3883106073674345 -0.13361052271556006 YCLS(ph)ILTSHVK ddPTM_BT-474_Trastuzumab_2h_R1 1 YCLSILTSHVK 11 0 O95163;F5H2T0 O95163 IKBKAP Elongator complex protein 1 1 Y(0.22)CLS(0.26)ILT(0.26)S(0.26)HVK 58.223 0.069361 362300000.0 191360.0 200080.0 179380.0 189280.0 192700.0 229890.0 225300.0 167210.0 237760.0 251420.0 True False 190329.73902209481 206739.5418490859 204635.14480108945 213242.82859268461 217239.2027776157 213998.24540285114 214401.37827041987 179688.05927517574 179167.23382077386 235374.16034850827 0.8086263111476717 0.8783442564085014 0.8694036103967194 0.9059738260008883 0.9229526404086118 0.9091832556555625 0.9108959877030047 0.7634145524263133 0.7612017969835293 1.0 17.844596422751817 -0.5124755061796218 5.357937129010264 0.9999999973570631 0.8597424074189899 0.3502365996926696 0.057650233795278005 3937571.50823728 1102356.6242847827 0.10239823512250881 0.01491361165715888 0.3072730659641756 0.5124755061796218 -0.14025758993807325 YCRPESQEHPEADPGSAAPYLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YCRPESQEHPEADPGSAAPYLK 22 1 P40763;P40763-3;G8JLH9 P40763 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription 0 116.98 8.774e-05 155360000.0 53174.0 55386.0 61211.0 53202.0 61482.0 69490.0 62426.0 61592.0 78201.0 75666.0 False True 52887.717092186795 57229.48952845597 69828.97674445028 59937.367745076015 69311.36826763548 64686.31986186488 59406.21588952166 66188.30779783877 58929.41138971385 70836.93109907818 0.7466122017371675 0.8079046994343987 0.9857707789003719 0.8461316267533221 0.9784637362492606 0.91317225151086 0.838633393172149 0.9343757101117569 0.8319023774094685 1.0 16.11221409045285 4.423647572276762 6.120297100744825 0.9103735235242987 0.7607016166423888 0.4817310748412382 0.05884480334848036 0.13029429081304472 10.363260187460106 0.013166863657961549 0.037783409012000176 26524.52237131995 -4.423647572276762 -0.1496719068819099 YCVHYLEDVGSFEYTR ddPTM_BT-474_Trastuzumab_2h_R1 1 YCVHYLEDVGSFEYTR 16 0 O95749-2;O95749 O95749-2 GGPS1 Geranylgeranyl pyrophosphate synthase 0 207.5 1.7278e-11 401670000.0 248610.0 298740.0 295740.0 305750.0 298440.0 329360.0 338570.0 263860.0 370150.0 345930.0 False True 247271.51138316773 308683.3803078564 337377.62138183817 344457.9186507459 336444.5650075335 306592.1184300448 322192.0756369999 283550.573053931 278931.4922558861 323852.4512344266 0.7635313873359435 0.953160549291042 1.0417633712385308 1.0636260968159343 1.0388822555614745 0.9467030966151694 0.9948730491583503 0.8755548150805185 0.861291897568428 1.0 18.304977138297197 -0.6727323127667317 7.580989136108363 0.9999880676939434 0.9539858760265868 0.02588594540834055 0.08926099947555913 0.0 0.0 0.09008910449488124 0.021234205566451336 0.2124553575188896 0.6727323127667317 -0.04600219166735664 YDAGEHGLQEAEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDAGEHGLQEAEK 13 0 Q93009;A0A669KBL1;Q93009-3;H3BND8;F5H2X1 Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 ; 112.42 0.00090194 559360000.0 709370.0 618660.0 552650.0 519970.0 538200.0 685280.0 676710.0 658530.0 777800.0 688490.0 False True 705550.8307384155 639251.7241121334 630458.3162800877 585798.148686275 606736.5798386759 637908.2065756049 643974.9520167586 707672.8525475845 586121.6119860283 644549.978754056 1.0946409960361443 0.9917799165052112 0.9781372074494391 0.908848294151912 0.9413336433763055 0.9896954892601346 0.9991078632282185 1.0979332493587972 0.9093501377798935 1.0 19.297932704715063 2.1343801198271435 4.269644926569458 1.0207050224960545 0.9787780227850152 0.0 0.06240433973836677 0.5986618161222201 19.565193633845183 0.02515485744110647 0.018122728252797426 136.26368197907442 -2.1343801198271435 -0.0419269997110393 YDCGEEILITVLSAMTEEAAVAIK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDCGEEILITVLSAMTEEAAVAIK 24 0 P63241;P63241-2;Q6IS14 P63241 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like 0 ; 62.663 0.051806 180627000.0 12969.0 11241.7 8521.5 12022.5 9789.3 12404.099999999999 14010.6 12345.7 15834.5 13115.0 False True 12899.176344991363 11615.873188748845 9721.253129794197 13544.547267305306 11035.909329273034 11546.633763110636 13332.853752310448 13266.998824194354 11932.299646429368 12277.989471683593 1.0505935336351604 0.9460729067685087 0.7917626214140409 1.1031567748565627 0.8988368457820284 0.9404335937687792 1.0859150663925605 1.0805514090716308 0.9718447530801781 1.0 13.58378671739887 2.248968855272747 24.9694751455762 1.0470906969523237 0.9514726218612242 0.16746964084660265 0.08471617857860124 303.6401743810281 728436.5024628324 0.02900564477455364 0.02402818395999177 177.40622523194452 -2.248968855272747 -0.09561807509109954 YDDAER ddPTM_BT-474_Trastuzumab_2h_R1 1 YDDAER 6 0 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PK06;H0YCK7;E9PIZ1;E9PK72;E9PKK3;E9PJD0;E9PNW6;P29692-3;E9PL71;E9PN91 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 130.05 0.037058 402050000.0 848390.0 878280.0 810610.0 817000.0 769910.0 672930.0 836130.0 782470.0 906440.0 839220.0 False True 843822.3625049908 907513.0188685295 924736.8420515717 920432.1162311025 867953.4748859059 626411.9330068317 795683.197573218 840861.8847021512 683060.0076737142 785660.2611076109 1.0740295828573332 1.1550959922411408 1.1770187291233147 1.171539610433513 1.1047440195871423 0.7973063727618429 1.012757341769427 1.0702614429253656 0.8694088800046313 1.0 19.5835460648161 2.9788197809539856 24.50671082760457 0.967302088158094 1.1463406519471204 0.5947377886189791 0.07687604590127536 454.1214119036962 525444.9427472987 0.024067103862359975 0.025784527728703276 952.4008645202805 -2.9788197809539856 0.17903856378902638 YDDAERR ddPTM_BT-474_Trastuzumab_2h_R1 3 YDDAERR 7 1 P29692;P29692-2;E9PRY8;P29692-4;E9PK01;E9PQ49;A0A087X1X7;E9PQZ1;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PK06;H0YCK7;E9PIZ1;E9PK72;E9PKK3;E9PJD0;E9PNW6;P29692-3;E9PL71;E9PN91 P29692;P29692-3 EEF1D Elongation factor 1-delta 0 ;; 136.11 0.0048289 1274730000.0 2076240.0 2683950.0 2493850.0 2727150.0 2536430.0 2269160.0 2607620.0 2259910.0 3066800.0 2627750.0 False True 2065061.7545319495 2773283.6532679615 2844962.403067214 3072406.9103790107 2859429.325901544 2112298.31022808 2481479.458524242 2428555.9597904542 2311028.233014593 2460044.745270042 0.8394407290771717 1.127330573397166 1.1564677465876414 1.2489231816967414 1.1623485025625666 0.85864223172746 1.008713139586348 0.9871999135218448 0.9394252838116196 1.0 21.230253126023694 2.753516013058313 24.907969161239347 0.9646117293858816 1.1186807655172364 0.32148534783882776 0.10673285667236648 933.1440218996137 1554134.578092302 0.033422377751079146 0.03532360939759771 566.9124740110765 -2.753516013058313 0.1540690361313548 YDDAIQLYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YDDAIQLYDR 10 0 Q15006;H0YAS9 Q15006 EMC2 ER membrane protein complex subunit 2 0 ;;; 179.8 4.8074e-06 697360000.0 1066460.0 1452070.0 1282670.0 1233090.0 1359050.0 1351040.0 1308520.0 1274880.0 1577040.0 1285710.0 False True 1060718.2978548447 1500401.2721551487 1463258.7868324965 1389199.067568433 1532116.9617795472 1257645.7848060725 1245221.8885681736 1370018.019309467 1188399.6232533373 1203654.8870482885 0.881247863709534 1.246537764520334 1.2156796790987425 1.1541506477617955 1.2728872522062724 1.0448557957424036 1.034533986416837 1.1382149767772298 0.9873258822282843 1.0 20.19899036996392 2.6812583892645057 24.999685148038147 1.0562293906397333 1.1626601398534318 0.20727236468772403 0.10793190775541152 462.6973590714843 201863.82839588547 0.033958709789005406 0.03201658334488716 480.01895734254055 -2.6812583892645057 0.10643074921369844 YDDMAACMK ddPTM_BT-474_Trastuzumab_2h_R1 5 YDDMAACMK 9 0 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;;; 150.28 0.0001992 3040400000.0 3182507.0 3245846.0 3050066.0 2700278.0 2374454.0 3120821.0 3321710.0 2830295.0 4354967.0 3204374.0 False True 3165372.7359217694 3353882.02195466 3479488.7811510717 3042132.917934258 2676826.6424085177 2905085.989892427 3161026.197135534 3041505.984846803 3281743.736418045 2999868.1079173987 1.0551706348581003 1.1180098261996687 1.1598805867390751 1.0140888894099418 0.8923147772209404 0.9684045715960584 1.0537217248961044 1.0138799025262182 1.0939626738111274 1.0 21.516467641966543 3.6551961354773144 7.141265833500382 1.0027972280750845 1.1114200105627337 0.43919520464917805 0.05481820241383598 0.24832967764306804 18.406655269802 0.015549166368715051 0.024192517926861494 4520.600570228611 -3.6551961354773144 0.10862278248764912 YDDMATCMK ddPTM_BT-474_Trastuzumab_2h_R1 4 YDDMATCMK 9 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 ;;; 190.73 8.5424e-05 1573770000.0 2061210.0 1957700.0 1918310.0 1784900.0 1711150.0 2276390.0 2228870.0 1941090.0 2937210.0 2251730.0 False True 2050112.6743819616 2022860.8610453573 2188391.373750575 2010868.1569900806 1929054.8097193418 2119028.5173456664 2121051.0429897485 2085943.992455303 2213373.9520975617 2108022.6635969584 0.972528763463964 0.9596010972641594 1.0381251641841847 0.9539120198826035 0.9151015513408948 1.0052209371079193 1.0061803791855632 0.9895263596910376 1.0499763547707026 1.0 21.007458946964945 2.5225486610604526 24.99959947719573 1.0078348574120817 0.9694883204014435 0.30364111982293907 0.031927713297683666 627.5048081264297 345327.4110646673 0.010618267132997907 0.010010688891832285 333.08008058614075 -2.5225486610604526 -0.03834653701063817 YDDPPDWQEILTYFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDDPPDWQEILTYFR 15 0 P61221;D6R9I9;D6RGF4;H0Y990 P61221 ABCE1 ATP-binding cassette sub-family E member 1 0 ; 134.56 8.0002e-05 580010000.0 222140.0 260740.0 248170.0 233250.0 246490.0 297500.0 268390.0 229331.0 326270.0 304580.0 False True 220944.0229220742 269418.5732793415 283110.17886769073 262779.42608433845 277879.0404393076 276934.5252396715 255406.95035063478 246444.84373922195 245865.13029401045 285141.4436359427 0.7748576289182528 0.9448593997557383 0.9928762906494736 0.9215757019868526 0.9745305238550048 0.971218079379757 0.8957201979966415 0.8642898085831149 0.8622567353201778 1.0 18.12131821621264 -0.13036346172437785 7.373756805424249 0.9999999984455247 0.914331053443596 0.15194091048266245 0.06247318627398223 8382253.043269705 1136767.9075007034 0.06180931691976255 0.014990961452279588 0.7406900971481053 0.13036346172437785 -0.08566894500192868 YDDYDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDDYDR 6 0 O75494-2;O75494;O75494-5;O75494-6;O75494-3;Q5JRI1;O75494-4 O75494-2;O75494-6;Q5JRI1 SRSF10 Serine/arginine-rich splicing factor 10 0 ; 132.96 0.034132 1953290000.0 4691900.0 5253600.0 4703500.0 4932700.0 4851500.0 4942000.0 5097800.0 4518300.0 5967300.0 5172700.0 False True 4666639.3317191005 5428462.900131738 5365711.916445117 5557179.314238878 5469309.767906604 4600371.172216666 4851199.938512859 4855478.4894625135 4496738.872723355 4842573.8574287295 0.9636692116859018 1.1209871155200302 1.1080289272643453 1.1475672809231212 1.1294220653994638 0.9499847204518082 1.001781300882153 1.0026648291618696 0.9285844687376635 1.0 22.20734262185608 2.738800150582254 24.999895555178103 0.9810211084489696 1.099200397736944 0.557349573262295 0.052102311198690854 16.67117498666831 1739990.5613702177 0.016379209486162012 0.01640893403281702 548.0247221925821 -2.738800150582254 0.11817928928797439 YDDYRDYDS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 YDDYRDYDSPER 12 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 YDDYRDYDS(1)PER 79.97 0.013082 327150000.0 106290.0 115180.0 98395.0 113820.0 113880.0 121220.0 106290.0 114490.0 149760.0 128910.0 True False 105717.7464499291 119013.6966722198 112248.16073532836 128229.60032977247 128381.94298035734 112840.34672118652 101148.3466327692 123033.82516843994 112853.65468118753 120682.85343459647 0.8759964107678507 0.9861690644953033 0.9301086073189406 1.0625337127885024 1.0637960516067293 0.9350155677445913 0.8381335355779111 1.01948057795234 0.9351258399135223 1.0 16.88086118762898 4.463848052734504 0.0025322124030135425 1.9226132942777525 1.1349346058573966e-05 0.014470605353904209 0.07085335711279145 995663.7547006612 429.2820155129778 160230.55675942756 165735.09803824508 29096.98919207604 -4.463848052734504 -1.922601944931694 YDDYSSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 YDDYSSSR 8 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 0 ;;; 228.45 4.9784e-06 10593870000.0 6997910.0 8659220.0 7845060.0 8090120.0 7659140.0 8301710.0 8559320.0 7309540.0 9338380.0 8116150.0 False True 6960234.030100899 8947436.903090974 8949576.257516073 9114328.362501312 8634486.079720538 7727832.32782331 8145272.9918223275 7855014.991892034 7037061.376881053 7598170.358414402 0.9160407968996066 1.177577822163774 1.1778593839509126 1.199542512548153 1.1363901666351155 1.017064893690534 1.072004523141818 1.0338034844392763 0.9261520925347556 1.0 22.85722062832426 2.0332127512618263 1.0489390514597212 0.9763951911159655 1.1271743205870361 0.3141293247599457 0.08182490759767565 0.6194641784735287 1.2588734831891106 0.06415209483565208 0.03076601676316727 107.94754038512045 -2.0332127512618263 0.15077912947107064 YDECLAVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 YDECLAVYR 9 0 O76094-2;O76094;R4GNC1;D6RDY6 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 93.992 0.020994 135220000.0 57657.0 81160.0 76819.0 78062.0 72366.0 74079.0 86090.0 73149.0 97163.0 89145.0 False True 57346.581118294875 83861.36153774396 87634.44747728221 87944.64119612274 81581.38115311334 68958.09309320894 81925.49780426288 78607.74982309571 73218.48056749607 83455.68977912568 0.6871500465704456 1.0048609239189314 1.0500715734207704 1.0537884406548859 0.9775412721292833 0.8262839031792061 0.9816646177281307 0.9419100127401673 0.8773335977603988 1.0 16.348722791465683 YDEEFQR ddPTM_BT-474_Trastuzumab_2h_R1 6 YDEEFQR 7 0 P55060-3;P55060 P55060-3 CSE1L Exportin-2 0 ;;;;; 186.67 0.0013852 7902490000.0 7769530.0 8276170.0 7948270.0 7578170.0 7355990.0 8468160.0 8571430.0 7663360.0 9582460.0 8489070.0 False True 7727699.713755936 8551637.315399596 9067317.328398673 8537565.544992732 8292731.724131367 7882776.031104474 8156797.18485763 8235238.836953598 7220991.131385484 7947290.284741528 0.9723691266937616 1.076044413756773 1.1409319407657161 1.0742737762309384 1.0434665687313665 0.9918822326446388 1.0263620545632197 1.0362322932591148 0.9086104662930824 1.0 22.922031610960428 2.943929416056527 3.1875176907374834 1.0011151345762312 1.071551043323209 0.31650509894511125 0.050247899141825876 0.3347468482532638 6.752860059274989 0.016305408205402494 0.01818630240538049 878.8796648340029 -2.943929416056527 0.0704359087469777 YDEELEGERPHSFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDEELEGERPHSFR 14 1 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 ; 118.08 0.00015992 889600000.0 478800.0 566590.0 524840.0 545040.0 513290.0 557400.0 584560.0 528640.0 667380.0 555270.0 False True 476222.1939996808 585448.6056391126 598732.9100089405 614042.0081157906 578654.4389918135 518868.24997846433 556282.5995639435 568089.8011795274 502913.141433833 519832.1932094364 0.9161075443586746 1.1262261423721402 1.1517811282759773 1.1812312052562657 1.1131562195469453 0.998145664613381 1.0701195632564864 1.0928330499735872 0.9674528588328757 1.0 18.987686457122273 2.7602239845734733 23.999637940328608 1.0401619643350377 1.1069302989228766 0.1684707457659378 0.07529495806561463 952.0851729572446 1054759.3997517054 0.023473926254823314 0.02486981499641883 575.7367933116576 -2.7602239845734733 0.06676833458783893 YDEFHDYLER ddPTM_BT-474_Trastuzumab_2h_R1 4 YDEFHDYLER 10 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 0 ;;; 186.87 1.2922e-06 1081700000.0 1279440.0 1455850.0 1341770.0 1362710.0 1263500.0 1503570.0 1478640.0 1235110.0 1607730.0 1398830.0 False True 1272551.637199148 1504307.0871700894 1530679.5531260893 1535228.9462781968 1424399.2356487669 1399631.74492307 1407112.5342466647 1327280.1799614986 1211526.4839782668 1309555.471801384 0.9717432095096098 1.1487158196520009 1.1688543067370287 1.172328304784511 1.087696753837703 1.068783854568436 1.0744963192060009 1.0135349044326722 0.9251433101277707 1.0 20.320645741802114 1.8111191772434336 1.303448587132946 0.9623818759571494 1.114926680280771 0.4849818520218431 0.0578712676527316 0.35654598221762507 1.133976033568608 0.046308780419151895 0.018869575361948596 64.73202262395007 -1.8111191772434336 0.1525448043236215 YDEIRR ddPTM_BT-474_Trastuzumab_2h_R1 1 YDEIRR 6 1 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 95.957 0.06855499999999999 817200000.0 1092100.0 1186500.0 1187200.0 1192800.0 1049700.0 1170100.0 1243700.0 1072600.0 1548200.0 1256400.0 False True 1086220.254943718 1225991.9352456052 1354347.4406726148 1343808.3576994617 1183373.072940651 1089213.741119125 1183537.4796046196 1152642.8585524408 1166666.8548171371 1176215.4763418422 0.9234874704437497 1.0423191667725484 1.1514450097908782 1.1424848462960644 1.0060852766714734 0.9260324855669285 1.006225052645583 0.97995892907079 0.991881911336176 1.0 20.16572094767321 3.0163403911953033 24.044248766819674 0.9801823844856172 1.070096531012914 0.29154499280725243 0.061857530388795136 192.63312089084653 283449.0171529083 0.01882593422158667 0.022494276369506214 1038.341928285929 -3.0163403911953033 0.08991414652729679 YDEIVK ddPTM_BT-474_Trastuzumab_2h_R1 4 YDEIVK 6 0 A0A2U3TZH3;Q05639;A0A2R8Y488 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ;;; 117.7 0.05234 1342430000.0 2347100.0 2230590.0 1991590.0 1945740.0 1888010.0 2414190.0 2401130.0 2402260.0 3171250.0 2506280.0 False True 2334463.4743873267 2304833.839729869 2271988.560789393 2192070.4844987835 2128436.8823879934 2247302.7276919773 2284978.1686926465 2581528.83962911 2389737.9300728883 2346327.0646657413 0.9949437610565581 0.9823156687911352 0.9683170752296894 0.9342561476232499 0.9071356310213348 0.9577960215073975 0.9738532206796863 1.100242535878891 1.0185016258222854 1.0 21.161972700202472 1.9066772188410284 6.933677957613061 1.0484658011611887 0.9565557105480859 0.5446930951728166 0.0333982701601032 0.17534524556602832 11.179372858074075 0.014886208702167591 0.00920154888680978 80.66352909815396 -1.9066772188410284 -0.09191009061310285 YDEMVESMK ddPTM_BT-474_Trastuzumab_2h_R1 4 YDEMVESMK 9 0 P62258;B4DJF2;I3L3T1 P62258 YWHAE 14-3-3 protein epsilon 0 ;;; 159.37 0.00015379 1386020000.0 2112120.0 1877710.0 1645330.0 1414640.0 1483150.0 2081270.0 1986920.0 1926790.0 2536370.0 1961960.0 False True 2100748.580598591 1940208.4422503351 1876978.1625352672 1593733.2789536947 1672020.3611812184 1937396.7036825924 1890805.0888285073 2070576.8538413718 1911315.599116741 1836746.033081538 1.1437338329644473 1.0563291861288067 1.0219040241433004 0.8676938728866413 0.9103165767430804 1.054798360137025 1.0294319708731172 1.1273071053636807 1.0405987353135024 1.0 20.80872072808509 0.02033639808677825 8.39005237056665 1.0000000001787135 1.0286055203448232 0.010778610911077346 0.0803277414721241 0.0 0.0 0.08548006936587953 0.020147845568303298 1.047939952557984 -0.02033639808677825 0.028605520166109732 YDEMVESMKK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDEMVESMKK 10 1 P62258;B4DJF2;I3L3T1 P62258 YWHAE 14-3-3 protein epsilon 0 ; 161.62 1.1251e-05 2957100000.0 7078000.0 6429300.0 6100100.0 5812600.0 5634000.0 8232900.0 8789300.0 7068800.0 11967100.0 8678600.0 False True 7039892.834439723 6643295.363906074 6958941.0569803 6548474.564020697 6351456.504665743 7663779.001162004 8364127.980613404 7596309.750639085 9017968.555924404 8124724.317876718 0.8664777485372573 0.8176640959114051 0.8565141147827796 0.8059934476314697 0.7817442483175363 0.9432663437329802 1.029466065969762 0.9349621542142704 1.1099414827014245 1.0 22.953887430724357 2.5491583811687275 4.0919222866628395 1.0043064393500496 0.8265312112520967 0.7902239841830533 0.04680131436606177 0.10511398860995554 3.3681873419293082 0.015617581630851026 0.014302988422393557 354.12646254255105 -2.5491583811687275 -0.17777522809795288 YDENEDLS(ph)DVEEIVSVR ddPTM_BT-474_Trastuzumab_2h_R1 1 YDENEDLSDVEEIVSVR 17 0 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F6SRV7;F5H0A1;F8WBN2 Q8NHM5-4;F8WBN2 KDM2B Lysine-specific demethylase 2B 1 YDENEDLS(1)DVEEIVSVR 184.62 6.5591e-10 71702000.0 76903.0 75307.0 68818.0 71563.0 67128.0 86581.0 83916.0 73579.0 76837.0 90142.0 True False 76488.9627927266 77813.54797095718 78506.97622322103 80622.86846248031 75676.35290117166 80595.85925975125 79856.66248974945 79069.83860659135 57901.55091305016 84389.06038555101 0.9063848138996811 0.9220809855619665 0.9302980251770039 0.9553710883156659 0.8967554864982105 0.9550510325808861 0.946291641652434 0.9369678752831521 0.6861262662306403 1.0 16.364768369590447 YDERPGPS(ph)PLPHR ddPTM_BT-474_Trastuzumab_2h_R1 7 YDERPGPSPLPHR 13 1 P08621;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR 149.09 2.6395e-05 16874210000.0 5865170.0 6678090.0 5557140.0 6085000.0 5921890.0 6404380.0 6123240.0 5751780.0 7653450.0 6430130.0 True False 5833592.5764016425 6900366.188659344 6339537.008473224 6855360.376090886 6676007.589708023 5961660.284888903 5827035.488151646 6181007.030547041 5767359.798475782 6019753.5982887475 0.9690749764342471 1.1462871487997335 1.0531223421296483 1.1388107941892636 1.1090167530454786 0.9903495529424395 0.9679857145329195 1.0267873808496304 0.9580724035142046 1.0 22.521273004847004 2.7311845878807346 24.239027917887945 0.991585113393673 1.0881753524053979 0.47275982889261914 0.04977999318508878 315.4766936944006 1036713.6773404806 0.015086425827480114 0.01448575573384416 538.4986115726048 -2.7311845878807346 0.09659023901172492 YDERPGPSPLPHR ddPTM_BT-474_Trastuzumab_2h_R1 4 YDERPGPSPLPHR 13 1 P08621;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ;;; 90.759 0.0041119 4369010000.0 1977830.0 3090930.0 2964800.0 2925400.0 2786690.0 2871320.0 3019490.0 2672730.0 3085630.0 2858870.0 False True 1967181.583037571 3193809.73654336 3382218.069496434 3295755.3400519807 3141558.4534943146 2672832.4067602493 2873425.7331280517 2872182.6844479414 2325217.83182367 2676414.4689982506 0.7350063324735586 1.1933165709340843 1.2637123691691734 1.2314069357447248 1.1737937041829556 0.9986616190132382 1.0736101476104858 1.073145702101575 0.8687809226700118 1.0 21.35187011806386 2.7337032038844202 24.172730693709344 1.0186596982528833 1.1377857571613659 0.12350331029029227 0.1484701931965887 561.7432278421749 2795485.2350036916 0.047939197287187325 0.046542389794800056 541.6306144457426 -2.7337032038844202 0.1191260589084826 YDGFDCVYGLELNKDER ddPTM_BT-474_Trastuzumab_2h_R1 1 YDGFDCVYGLELNKDER 17 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 0 141.85 5.5485e-07 172930000.0 132850.0 143510.0 116160.0 150570.0 120140.0 151090.0 162660.0 126300.0 196010.0 156530.0 False True 132134.75036102245 148286.64359637315 132514.3183191802 169632.14656171008 135439.1168744304 140645.50392760333 154791.51437845745 135725.14733840508 147705.9618994359 146540.1213879248 0.901696744274095 1.0119183892568568 0.9042869424707577 1.1575815889537546 0.9242459716263811 0.9597747196843308 1.0563080807657403 0.9261978634445781 1.0079557768921514 1.0 17.160936190297665 4.747603282165629 23.06003599769989 0.9909015881158918 0.9016966027874912 0.13213209905466383 0.07069376810541578 814.7236201388519 2077516.2089339637 0.015737808624452336 0.18029420557960998 55924.65095112153 -4.747603282165629 -0.0892049853284006 YDGHLPIEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 YDGHLPIEIK 10 0 P43490;A0A0C4DFS8 P43490 NAMPT Nicotinamide phosphoribosyltransferase 0 110.39 0.0018927 1103600000.0 989320.0 1058800.0 978600.0 887880.0 940030.0 1097800.0 1188200.0 1037400.0 1393200.0 1069400.0 False True 983993.6110437844 1094041.5179418838 1116378.373856318 1000285.5169636138 1059737.248505669 1021911.6699432334 1130722.226635211 1114816.0558104618 1049864.5279235465 1001149.9764405964 0.9828633413568981 1.092784841119955 1.1150960396816816 0.9991365334891621 1.0585199754719754 1.0207378454689189 1.1294234163149908 1.1135355162010632 1.048658595244786 1.0 19.933226681419864 2.251761763076048 24.99917680588793 1.0873859445944412 1.048770602099373 0.03602930219913236 0.05060788191918108 498.18094357770275 943409.9234642616 0.017363046391686895 0.014448866648465463 178.55078465620434 -2.251761763076048 -0.03861534249506815 YDGKWEVEEMK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDGKWEVEEMK 11 1 P27824;P27824-2;H0Y9Q7;D6RDP7;D6RAU8;D6RB85 P27824 CANX Calnexin 0 ; 136.24 9.4163e-05 1861640000.0 2138920.0 2187670.0 2190920.0 1475930.0 2121660.0 3445100.0 2365110.0 2138280.0 4100300.0 2441210.0 False True 2127404.2923763543 2260485.273475561 2499382.492181975 1662782.5866694883 2391840.824935942 3206948.345893087 2250700.5937024094 2297849.311565832 3089836.006205077 2285409.8877749667 0.930863344801381 0.9890940288511344 1.0936254829173457 0.7275642743842082 1.0465697368906524 1.4032267747888818 0.9848126612831147 1.0054429727714953 1.3519833018720702 1.0 21.12402150486068 3.0030531322364973 24.998717426677846 1.1338510094390952 0.9425184250073262 0.28781024852428083 0.15751377824753307 135.6060903699444 1110306.3233189406 0.045808295778634094 0.05447731877747324 1007.0548659141582 -3.0030531322364973 -0.19133258443176904 YDGNVYENLFEWAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YDGNVYENLFEWAK 14 0 Q15067-2;Q15067;Q15067-3;K7ENF1;K7ESC7 Q15067-2 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 176.91 2.7139e-07 0.0 53431.0 71547.0 64332.0 61620.0 62321.0 57797.0 75154.0 71113.0 85809.0 62236.0 False True 53143.33343274218 73928.39864392525 73389.38641623204 69421.0856819591 70257.20994449286 53801.62942950357 71518.51390383996 76419.81316449714 64662.52173169084 58264.04519707969 0.9121119766570178 1.2688511138191738 1.2595999156596573 1.1914910035364077 1.2058416079221064 0.9234104712008601 1.227489675011865 1.3116118681084548 1.1098186113402893 1.0 15.830318248950284 YDGSTIVPGEQGAEYQHFIQQCTDDVR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDGSTIVPGEQGAEYQHFIQQCTDDVR 27 0 Q14019 Q14019 COTL1 Coactosin-like protein 0 ; 259.71 5.2403e-53 1931060000.0 827460.0 873370.0 868370.0 874430.0 813440.0 984840.0 995200.0 791800.0 969790.0 991440.0 False True 823005.0472994483 902439.5924866871 990628.947992653 985132.7483426713 917026.762363382 916760.3288639945 947058.3739668084 850888.1366789321 730798.2490202242 928165.4503855106 0.8867007999033101 0.9722831119299492 1.067297805128599 1.0613762319352649 0.9879992430040333 0.9877121891180295 1.0203551248039353 0.9167418764892815 0.7873577374773963 1.0 19.82402247071116 1.604943738943533 4.676834470107131 0.8817488831232673 1.0007355819625672 0.2962483430604025 0.06764127016585937 0.166888569943945 8.061556728261682 0.03787497295462911 0.017294296660347104 40.26648673759884 -1.604943738943533 0.11898669883929991 YDHQAEEDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDHQAEEDLR 10 0 Q15417;Q15417-3 Q15417 CNN3 Calponin-3 0 ; 155.97 1.1773e-05 1110610000.0 2042160.0 1966550.0 1823650.0 1710060.0 1679930.0 2116120.0 2243600.0 1742030.0 2644300.0 2290900.0 False True 2031165.2374653062 2032005.4279454225 2080404.0685500419 1926553.4206635999 1893859.1277747785 1969837.6052106705 2135068.4966156837 1872029.1244491006 1992647.6968046478 2144692.800661831 0.9470658160639642 0.9474575693630181 0.970024270099685 0.89828875262186 0.8830444748032689 0.9184707500313322 0.995512502283228 0.8728658593302551 0.929106348559447 1.0 21.032339584554272 5.258815305222295 0.0018725208658470006 1.8516142439091832 2.03173773643693e-08 0.024484250166611043 0.041454323990848585 1922042.0976260726 483.38198006601425 235210.33295735723 242821.68558969197 181474.3732700463 -5.258815305222295 -1.8516142235918058 YDIDLPNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 YDIDLPNKK 9 1 O00244;E5RGN3;E5RIM7 O00244 ATOX1 Copper transport protein ATOX1 0 107.24 0.0044977 1769400000.0 6758600.0 5378700.0 4776800.0 4374700.0 4668300.0 6696600.0 6078600.0 6165700.0 8755900.0 6348200.0 False True 6722212.448551044 5557726.778007194 5449331.919310094 4928536.5714519005 5262780.33381808 6233679.804100789 5784554.8954930045 6625815.842790201 6598125.768048934 5943052.441032544 1.1311043466719148 0.9351636777819845 0.9169247576693651 0.8292938048844843 0.8855348974345794 1.0489020357723364 0.9733306163605041 1.1148842970059734 1.1102250625442198 1.0 22.502772680557737 2.25090903242395 1.695296384561936 1.0778478623865217 0.9364085081181024 0.2717169218829717 0.08477807471791494 0.43961363155688116 2.5220630212156228 0.04576660512743471 0.02872255179263106 178.20054684466325 -2.25090903242395 -0.14143935426841936 YDIFLR ddPTM_BT-474_Trastuzumab_2h_R1 7 YDIFLR 6 0 Q70JA7 Q70JA7 CHSY3 Chondroitin sulfate synthase 3 0 ;;;;;; 114.67 0.058367 2296084000.0 1039297.0 2126320.0 2599613.0 1950080.0 2014087.0 1906552.0 2784500.0 2159419.0 2619503.0 1855440.0 False True 1033701.540428753 2197093.2758124177 2965615.9141587387 2196959.9280537916 2270569.041021069 1774756.54778066 2649803.097177028 2320565.811087496 1973961.5851918717 1737024.2306778966 0.5950990908315293 1.2648604648162984 1.7072968020724546 1.2647836968839514 1.30716025770979 1.0217223896111327 1.5254842450544903 1.3359432586509543 1.1364041734878432 1.0 20.728186448435817 4.732481769837581 5.484281818913782 1.3141850836372757 0.5710252727338417 0.5023089972747676 0.2045711067500748 0.10579640794918717 12.274284230449563 0.047188107993447484 0.29419518507340364 54010.944238465294 -4.732481769837581 -0.743159810903434 YDLIQNSESPAS(ph)PPVAVPHSWSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YDLIQNSESPASPPVAVPHSWSR 23 0 A0A1B0GU24;Q9HCJ0-2;Q9HCJ0 A0A1B0GU24 TNRC6C Trinucleotide repeat-containing gene 6C protein 1 YDLIQNSESPAS(1)PPVAVPHSWSR;YDLIQNSESPAS(1)PPVAVPHSWSR;YDLIQNSES(0.009)PAS(0.991)PPVAVPHSWSR 198.02 1.8441e-24 655340000.0 248997.0 253665.0 237896.0 253277.0 262454.0 243242.0 248173.0 235612.0 248513.0 253661.0 True False 247656.42781816746 262108.08618126938 271389.68897089944 285341.84223092406 295875.9612132665 226427.25307007818 236167.9238770743 253194.56385349363 187270.30105359212 237472.13780989216 1.0428862522660587 1.1037424794276265 1.142827497464818 1.2015802984826536 1.2459396876703464 0.9534897658239977 0.9945079286149269 1.066207455698184 0.7885990448425195 1.0 17.85739872892669 2.7219395631971914 24.75896359832044 0.9758718280073813 1.1477266082856523 0.5509968577958686 0.0837604893148269 617.5618580573346 919927.8396986666 0.027842774215762624 0.026313700894151807 527.1564967555685 -2.7219395631971914 0.17185478027827106 YDLLVSNAIQFLASVCERPHYK ddPTM_BT-474_Trastuzumab_2h_R1 1 YDLLVSNAIQFLASVCERPHYK 22 1 P55060-3;P55060 P55060-3 CSE1L Exportin-2 0 212.18 1.4456e-23 251440000.0 339230.0 350120.0 331290.0 299640.0 285540.0 343780.0 369570.0 386290.0 404160.0 372410.0 False True 337403.6233719963 361773.5325479906 377932.75237569906 337574.3932772185 321901.82647182385 320015.29777107376 351692.4872054999 415116.92134087445 304560.1834665375 348642.4749637579 0.9677639633755757 1.0376633902269015 1.0840123608432561 0.9682537772034518 0.9233006578021975 0.9178895881930049 1.0087482520368727 1.1906665169928785 0.8735601808075656 1.0 18.41138881752824 1.987602426410394 24.527451049493617 1.0568723927887902 0.9848549634732384 0.0 0.08729296586033684 1015.771997199058 2009609.9729665907 0.035260966808623194 0.024065288549180636 97.18571327067424 -1.987602426410394 -0.07201742931555177 YDLSGRPLNIKEDPDGENAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YDLSGRPLNIKEDPDGENAR 20 2 A0A0A0MQW0;A0A0A0MR39;Q9P2K5-2;Q9P2K5;A0A087WUT0 A0A0A0MQW0 MYEF2 Myelin expression factor 2 0 69.765 0.010938 439050000.0 240320.0 257300.0 212830.0 224460.0 238160.0 272310.0 265240.0 241430.0 361020.0 265140.0 False True 239026.14382206203 265864.0749588653 242794.6140484773 252876.61298559798 268488.2643150854 253485.85064879028 252409.32788480306 259446.73255669905 272051.4584201543 248218.53820222532 0.9629665276141697 1.0710887143419725 0.9781485936021059 1.018766022945384 1.081660806882789 1.0212204635669624 1.0168834677414926 1.0452351159417677 1.0960158753272171 1.0 17.921251341612045 3.4614476027602064 24.916345459553852 1.0434628153212544 1.0087178949558222 0.18198592180166917 0.03772537724100037 402.4923828335312 639838.0835388387 0.009933749415526445 0.013453353713664141 2893.660678437832 -3.4614476027602064 -0.0347449203654322 YDNGSGYR ddPTM_BT-474_Trastuzumab_2h_R1 5 YDNGSGYR 8 0 Q08211;Q08211-2 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;; 197.5 0.00033392 2256730000.0 1878661.0 2284468.0 2050335.0 2144204.0 2111585.0 2182665.0 2261567.0 2068377.0 2581001.0 2187760.0 False True 1868546.4979148598 2360505.1363899293 2339004.346168705 2415660.0065498087 2380482.8334051473 2031782.5059907516 2152166.3641850785 2222729.7947455873 1944947.8871915033 2048135.283764432 0.9123159552627347 1.1525142675396753 1.1420165282586516 1.1794435776282677 1.1622683580890552 0.9920157726380142 1.0507930707728639 1.0852455950371862 0.9496188570203857 1.0 20.965879580936555 2.7356135856781436 24.992658442032436 1.0290179712978345 1.1177583572553689 0.2526584435946193 0.07870219110547953 398.3205151187402 3377986.3187530115 0.025149227862363475 0.024636472428714414 544.0183960619223 -2.7356135856781436 0.08874038595753442 YDNQIHIIDFDDENNIINK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDNQIHIIDFDDENNIINK 19 0 A8MUM1;Q53HC9;F8WDS8;C9J0U9;D3YTH5 A8MUM1 TSSC1 Protein TSSC1 0 ; 265.07 2.2021999999999997e-31 423600000.0 296830.0 265210.0 260064.0 244432.0 250180.0 324140.0 310260.0 280200.0 380840.0 341020.0 False True 295231.9002609136 274037.35452716966 296678.75068318966 275377.0661378225 282038.9400669636 301732.9647434864 295251.5384917022 301109.9468267701 286987.0849945476 319255.8116380892 0.924750277046141 0.8583629319732494 0.9292822240602058 0.8625592897584964 0.8834261735748293 0.9451134599408112 0.924811789570182 0.9431619906362444 0.8989251707651866 1.0 18.284353356996405 2.7388531936162885 24.99993225498015 0.9378422173548194 0.8902970619450057 0.38318595453517057 0.03189410371931642 28.2528907347631 2414229.331637449 0.009228879469155063 0.009230095197409457 548.0916598822264 -2.7388531936162885 -0.047545155409813744 YDNSLK ddPTM_BT-474_Trastuzumab_2h_R1 4 YDNSLK 6 0 P04406;E7EUT5;P04406-2 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ;;; 120.65 0.046517 6480000000.0 5023050.0 4681250.0 4249950.0 3695640.0 3774410.0 4836260.0 5356720.0 4612710.0 6589810.0 5024770.0 False True 4996006.456913317 4837062.576374622 4848306.018772385 4163507.6450774968 4255058.740819203 4501940.729531478 5097594.988942396 4956933.84306678 4965839.624429991 4704084.87667797 1.0620570393367352 1.0282685587489995 1.0306587032069592 0.8850834443314233 0.9045454859700851 0.9570279549697992 1.08365285120925 1.0537509362644348 1.0556441379384447 1.0 22.16548266054813 2.243735954554151 24.990101012840746 1.0539533983244083 0.9750672561389198 0.2758917697671104 0.05538931943996748 168.7076442222208 814641.2245476921 0.021660511000309645 0.017619885157085624 175.28144892023798 -2.243735954554151 -0.0788861421854885 YDQDLCYTDILFTEQER ddPTM_BT-474_Trastuzumab_2h_R1 2 YDQDLCYTDILFTEQER 17 0 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ; 228.03 3.632e-15 122033000.0 75077.0 80355.0 69828.0 76498.0 68751.0 73940.0 79573.0 72109.0 88014.0 72132.0 False True 74672.79377383886 83029.56759937672 79659.17544414355 86182.63895648341 77506.03233089708 68828.70183603802 75723.74999162053 77490.13974208277 66324.129027177 67528.47400468781 1.1057971451961892 1.229548998747 1.179638317291364 1.2762414703833027 1.147753351060719 1.0192545122707783 1.1213603018241431 1.147518004578386 0.9821653754914229 1.0 16.043208335689297 2.994580136275017 24.277469499500196 1.0764368856126336 1.2004287572571135 0.518379739715169 0.06407270717902157 148.7445859150806 666286.1728884743 0.018651122204132987 0.021650486490121707 987.597851075506 -2.994580136275017 0.12399187164447989 YDS(ph)DGDKS(ph)DDLVVDVSNEDPAT(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 3 Y(0.001)DS(0.999)DGDKS(1)DDLVVDVS(0.001)NEDPAT(0.999)PR;Y(0.009)DS(0.991)DGDKS(1)DDLVVDVS(0.003)NEDPAT(0.997)PR 166.89 1.0394e-11 1146210000.0 855120.0 509410.0 734290.0 378810.0 456910.0 632350.0 673420.0 698180.0 974320.0 645690.0 True False 850516.1289327629 526365.4039051518 837671.6494369055 426767.3071597353 515094.78018225456 588637.1328917859 640844.1018857796 750281.7368862049 734211.8912191138 604481.5113969793 1.407017605827494 0.8707717175479887 1.3857688508967214 0.7060055586703721 0.8521266084579681 0.9737884811917962 1.0601550085539673 1.2411988170693191 1.2146143056093193 1.0 19.20533868847895 -0.13168061095251274 8.134557754495761 1.000000016477295 1.0726675453843186 0.010569591114294119 0.22184430087147144 0.0 0.0 0.20984679021535876 0.04946136279050369 0.7384470995913579 0.13168061095251274 0.07266752890702355 YDS(ph)DGDKS(ph)DDLVVDVSNEDPATPR ddPTM_BT-474_Trastuzumab_2h_R1 3 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 2 Y(0.005)DS(0.995)DGDKS(1)DDLVVDVSNEDPATPR;Y(0.002)DS(0.998)DGDKS(1)DDLVVDVSNEDPATPR;Y(0.001)DS(0.999)DGDKS(1)DDLVVDVSNEDPATPR 212.39 1.1349000000000002e-25 1071710000.0 934340.0 653370.0 1184310.0 558640.0 595230.0 873790.0 914270.0 890300.0 1212890.0 947120.0 True False 929309.6172549322 675117.0254794938 1351050.5537929435 629363.7667213503 671029.0122953826 813386.9539804129 870043.2672494308 956738.7068517958 913989.5113933311 886673.9907297726 1.0480848958815951 0.7614038897473941 1.5237286397461236 0.7098028963309904 0.7567933866460834 0.9173461300144361 0.9812436998781773 1.0790197038083376 1.03080672372162 1.0 19.75804423126093 1.9462815252052144 5.9552486817622565 1.0426881246046569 0.9499882335433938 0.028406799962169882 0.21765656678041406 0.9316269394852343 73.88027955720908 0.09479501435133898 0.05856738098213653 88.36525299514342 -1.9462815252052144 -0.09269989106126308 YDS(ph)DGDKSDDLVVDVSNEDPATPR ddPTM_BT-474_Trastuzumab_2h_R1 3 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;H0YNT2;A0A0D9SES8;H0YLI3;H0YKH0;H0YLW9 H0YKT5 TLE3 Transducin-like enhancer protein 3 1 YDS(0.999)DGDKS(0.001)DDLVVDVSNEDPATPR;YDS(0.541)DGDKS(0.459)DDLVVDVSNEDPATPR;YDS(0.994)DGDKS(0.006)DDLVVDVSNEDPATPR 240.42 9.238e-38 1530440000.0 1470110.0 1059090.0 922220.0 894680.0 922490.0 1364180.0 1381980.0 1323840.0 1970810.0 1369760.0 True False 1462195.091104577 1094341.1704165752 1052060.5599200614 1007946.3962663921 1039963.6334733919 1269877.447534305 1315128.347723724 1422631.6631233096 1485130.2830010087 1282340.7440894651 1.140254723905555 0.8533934334228923 0.8204220015383542 0.7860207210230159 0.8109885288031031 0.990280823086527 1.0255685579557405 1.1094022159714336 1.1581401354095908 1.0 20.290348235718877 2.3529373490690464 2.2074260599125846 1.0919670362093334 0.8732233085858196 0.4363271415185931 0.10165153716824395 0.2713576700817921 2.7114938006022937 0.04407084937106883 0.033042941799086754 225.39140410882362 -2.3529373490690464 -0.2187437276235138 YDS(ph)SNQVK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDSSNQVK 8 0 O95983-2;O95983;K7EIE8;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 YDS(0.921)S(0.079)NQVK;YDS(0.5)S(0.5)NQVK 144.55 0.00061218 618885000.0 966530.0 555670.0 534370.0 535750.0 483010.0 592020.0 618680.0 705550.0 1190630.0 819460.0 True False 961326.3098715777 574165.1400403919 609604.6511726965 603575.8950683151 544518.4604754347 551095.0508651781 588752.0848128857 758201.7237103054 897215.1901246132 767161.3612249974 1.2530953179609294 0.7484281261553233 0.7946237675464839 0.7867652433700906 0.7097834797179458 0.7183561095741237 0.7674423068867426 0.9883210521703213 1.1695260416816964 1.0 19.549170533983606 1.574498742126263 4.047407911479411 1.0841638194805665 0.8119633444535205 0.32213919375865907 0.15366936020233232 0.18745829867138808 6.941076314886575 0.09129660534014364 0.03932944094525257 37.54038671652708 -1.574498742126263 -0.27220047502704603 YDSDRTELGFTNYIR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDSDRTELGFTNYIR 15 1 Q14554 Q14554 PDIA5 Protein disulfide-isomerase A5 0 ; 151.9 2.6664e-06 484240000.0 152968.0 198632.0 182903.0 193002.0 199130.0 208903.0 197477.0 162415.0 218285.0 180014.0 False True 152144.43728434248 205243.34604442026 208654.15257862443 217436.0334110591 224488.02516401978 194462.0273147669 187924.28307460144 174535.23202665916 164491.58661914399 168525.35240226067 0.9027985114143665 1.2178781596879014 1.2381172897985018 1.290227436475263 1.332072723563748 1.1539036978281867 1.115109865642272 1.0356615757732002 0.9760643385365051 1.0 17.362606116489093 1.8932432404115305 1.724331915056283 0.9923462650311975 1.2047690779421971 0.36915830983866016 0.10881067920895368 0.38196483701974576 2.125423702603819 0.07495413677390353 0.03404206536505769 78.20657026714503 -1.8932432404115305 0.21242281291099963 YDSSREAGTVK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDSSREAGTVK 11 1 Q96J01;D6REC9 Q96J01 THOC3 THO complex subunit 3 0 ; 80.014 0.015362 1036470000.0 697810.0 1120640.0 1108300.0 1054250.0 1147630.0 1063890.0 1073750.0 890560.0 824060.0 1120030.0 False True 694053.068493979 1157939.8249588155 1264339.0064837066 1187717.941905313 1293773.8779640652 990345.7884276779 1021808.6103766679 957018.1093720503 620981.4548382697 1048548.7264940739 0.6619178021555698 1.1043261945780065 1.2057990005969002 1.1327255585694764 1.2338710116886278 0.9444919090589111 0.9744979747323578 0.9127073307999093 0.5922294683572622 1.0 19.999962474953204 1.863331141496736 1.6269129085835115 0.8048570189700828 1.0714427379019906 0.22349293291019323 0.17882844910286427 0.5068026385884676 2.527195181502559 0.12467215624473417 0.05446746406051505 73.00139201914261 -1.863331141496736 0.26658571893190786 YDSWHK ddPTM_BT-474_Trastuzumab_2h_R1 3 YDSWHK 6 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 119.7 0.020787 1374340000.0 1098100.0 1380810.0 1426870.0 1415950.0 1438550.0 1739100.0 1703490.0 1527470.0 1869960.0 1805420.0 False True 1092187.95161038 1426769.426132729 1627760.8934236302 1595209.1248193767 1621740.8155461315 1618880.1104010537 1621085.6807362498 1641457.5677354974 1409133.4141802446 1690196.549902173 0.6461899071286088 0.8441440885767452 0.9630601207403029 0.9438009590728995 0.9594983587204673 0.9578058306264753 0.9591107500663616 0.9711637192908147 0.8337097920722911 1.0 20.68875959398612 4.66687810220731 2.177352515717969 0.9501173451329544 0.5916503290111101 0.8303352232818688 0.04173317750745046 0.1905855108285628 1.160733024125139 0.009994387138126155 0.12485729899907747 46438.491335241524 -4.66687810220731 -0.3584670161218443 YDSYESCDSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YDSYESCDSR 10 0 Q9ULX6;V9GZ50;M0R1Y5;M0R010;M0QYT7 Q9ULX6 AKAP8L A-kinase anchor protein 8-like 0 ;; 179.28 4.9403e-06 1112630000.0 754450.0 961840.0 880210.0 811830.0 785850.0 889140.0 899960.0 795730.0 1062290.0 870190.0 False True 750388.1250272754 993854.2629554414 1004135.9170775275 914607.5947611941 885923.339402124 827675.8446104272 856425.4966189398 855111.4132350663 800502.8634567204 814653.729192859 0.9211129810585209 1.2199714152663736 1.2325923040607734 1.122694909489173 1.0874845442368224 1.0159848472435893 1.0512754878903794 1.0496624302969704 0.9826295943551882 1.0 19.635827442576137 3.0070611559289335 2.6027791157922118 1.0277415921082866 1.138904007423236 0.2579550521357683 0.08188723741069888 0.3751746886885788 5.133762525349238 0.026036465809788422 0.030394502034726694 1016.3918077650573 -3.0070611559289335 0.1111624153149493 YDVDTLDMVFLDHWK ddPTM_BT-474_Trastuzumab_2h_R1 3 YDVDTLDMVFLDHWK 15 0 P21964-2;P21964;E7EMS6;E7EUU8;H7BZ45 P21964-2 COMT Catechol O-methyltransferase 0 ;; 292.83 5.8263e-44 1046357000.0 1797238.0 1627290.0 1479132.0 1272653.0 1347589.0 1871015.0 1771080.0 1542848.0 2125426.0 1721678.0 False True 1787561.870299915 1681453.3639324221 1687380.9287541825 1433770.739311949 1519196.4713642162 1741676.13694556 1685406.0942173782 1657983.1521834014 1601643.241549262 1611799.0360373077 1.109047610981782 1.0432152683664355 1.0468928762376586 0.8895468400557859 0.9425470777667421 1.0805789667349361 1.0456676400310037 1.0286537683132257 0.9936990938318129 1.0 20.620240444836284 4.531514079339603 1.9810674125053376 1.0040976061162963 1.1147379350533548 0.29112530372529277 0.051670644967771275 0.7206875269954864 4.158802455386001 0.014676640856389615 0.12437096685466438 34002.75289361947 -4.531514079339603 0.11064032893705855 YDVEIVEEYFAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YDVEIVEEYFAR 12 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 0 ; 123.8 0.00077775 34731000.0 40288.0 46844.0 40221.0 45469.0 39966.0 44984.0 46222.0 38022.0 47889.0 43923.0 False True 40071.0938844176 48403.17422220403 45883.76719280088 51225.37073795838 45055.43320295899 41874.36196094587 43986.065274812856 40859.39471180389 36087.39762972343 41119.7965356278 0.9744964046623732 1.1771258201695045 1.1158558908005634 1.245759343521428 1.0957114820332636 1.0183504172902287 1.0697053239721557 0.9936672394865017 0.8776161525618421 1.0 15.327545505516868 2.0800909379431762 1.0967779860640956 0.9473845921277404 1.1281447908986952 0.451919948403134 0.07510671671456154 0.44607906985932955 0.9980903495536614 0.05567052680673066 0.027537203791956594 120.25162059540946 -2.0800909379431762 0.18076019877095484 YDVTFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YDVTFLR 7 0 Q9NYU1 Q9NYU1 UGGT2 UDP-glucose:glycoprotein glucosyltransferase 2 0 88.59100000000002 0.043028 132160000.0 160670.0 314200.0 478200.0 279120.0 269940.0 268400.0 478530.0 279910.0 384110.0 271360.0 False True 159804.97057211507 324657.9570620891 545526.4034110877 314456.56338118145 304315.25894026796 249846.13974564007 455381.6757378777 300798.3055541798 289451.2373103027 254041.5724770158 0.6290504700232608 1.2779717661819396 2.147390279834785 1.2378153713783662 1.1978955096721449 0.9834852512899033 1.7925478546590163 1.1840515023634341 1.1393853159072636 1.0 17.954705079697085 YDVYLYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YDVYLYDR 8 0 Q9Y6Y8;Q9Y6Y8-2;H7C0V8;A0A0C4DH82;H7C4C4 Q9Y6Y8 SEC23IP SEC23-interacting protein 0 ;;; 105.57 0.01015 421255000.0 536905.0 623197.0 628910.0 559141.0 565008.0 611456.0 633106.0 539418.0 761124.0 587941.0 False True 534014.363135753 643939.7354144584 717455.0614162851 629928.1932699812 636958.4197352108 569187.4859326002 602480.2440802155 579672.1102691027 573555.1887390764 550418.1020183853 0.9701976755079824 1.1699101702017591 1.3034728668722462 1.1444539904484101 1.1572265109004989 1.0341002300712632 1.0945865367997856 1.0531487030376414 1.0420354756426928 1.0 19.07016839226517 2.7457174628764207 22.924895433903355 1.0525757983647435 1.1585345005728807 0.2996018278766075 0.07860608083390008 233.4041665509887 747641.3408689463 0.024740118196975126 0.025687022341337722 556.8233808416345 -2.7457174628764207 0.10595870220813719 YDWDLLAAR ddPTM_BT-474_Trastuzumab_2h_R1 6 YDWDLLAAR 9 0 Q15029;Q15029-3;Q15029-2;K7EP67;K7EJ74 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ;;;;; 191.38 8.366700000000001e-05 758742000.0 1104144.0 1372401.0 1407538.0 1224458.0 979045.0 1089374.0 1269637.0 1034232.0 1603022.0 1212704.0 False True 1098199.4113859297 1418080.5376510776 1605707.1158603858 1379474.2572534923 1103720.577495646 1014068.1394905626 1208219.8078256578 1111411.6435636824 1207978.707494301 1135308.19247187 0.967313914114242 1.249070998566069 1.4143358838663282 1.2150658881884815 0.9721770571324344 0.8932095674238593 1.0642218701822628 0.9789514872995337 1.064009504647551 1.0 20.11465255617577 3.251964920705185 9.99655939073211 0.993355693108017 1.2288474792496922 0.4715124178149216 0.11142000926027817 0.20130459292091277 136.48171930299765 0.03175668034985588 0.04177715533902618 1786.3432806092535 -3.251964920705185 0.2354917861416752 YDYNSGEELESYK ddPTM_BT-474_Trastuzumab_2h_R1 2 YDYNSGEELESYK 13 0 Q9Y3F4;Q9Y3F4-2;H0YH33 Q9Y3F4 STRAP Serine-threonine kinase receptor-associated protein 0 ; 265.72 5.5594e-24 505460000.0 449270.0 405870.0 348890.0 341490.0 319090.0 469080.0 439740.0 411540.0 558890.0 492260.0 False True 446851.18023858924 419379.1375964043 398010.67939375644 384722.5989862414 359724.2201053942 436653.6036955468 418468.09623006865 442251.20455777657 421159.048242313 460843.54535501037 0.9696374935540387 0.910024978809969 0.8636568384334196 0.8348225832041777 0.7805777551430844 0.9475094272160656 0.9080480793274476 0.9596558507011068 0.9138872671372092 1.0 18.81391751869004 YEAHSDK ddPTM_BT-474_Trastuzumab_2h_R1 1 YEAHSDK 7 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 0 123.69 0.0042192 139650000.0 371720.0 337990.0 314610.0 268190.0 251700.0 206030.0 344230.0 311790.0 485090.0 365510.0 False True 369718.7008219745 349239.7928307307 358904.35336085845 302142.8265018597 283752.50305721816 191787.63104245256 327578.2798136998 335057.35303754016 365546.06937297777 342182.83887114516 1.0804711949952535 1.02062334272188 1.048867192010205 0.8829864977993148 0.8292423547402681 0.5604829034534765 0.9573194286843094 0.9791763787537918 1.0682770374426358 1.0 18.38440788214163 3.739457070657841 23.76213147418862 0.8886961188231133 1.047050864180311 0.22240255409634502 0.13063062192504016 64.77653694173301 1716956.9489810255 0.037113790208081976 0.06229248936949746 5488.542995214365 -3.739457070657841 0.15835474535719762 YEALKEPMVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEALKEPMVAR 11 1 A0A0D9SGF6;Q13813;Q13813-2;A0A0D9SF54;Q13813-3 A0A0D9SGF6 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 0 69.03 0.050724 168080000.0 121580.0 138370.0 134770.0 135620.0 126600.0 155170.0 146580.0 126960.0 168340.0 155970.0 False True 120925.42678880789 142975.56180356856 153744.4445581606 152789.47809456827 142721.7595830108 144443.46313089036 139489.36541002273 136434.399889817 126854.86264043185 146015.86106736484 0.8281663779869681 0.9791782944566986 1.0529297532083188 1.0463895975251511 0.9774401119147303 0.9892313210018394 0.9553028307361 0.9343806822936351 0.8687745407460015 1.0 17.155765565736367 1.9633924420966562 2.503204767913801 0.9270374500416181 0.985276144360524 0.07888959881636903 0.06474193317407483 0.6288874937830241 7.276227096988162 0.03564019010378192 0.019141039231056183 91.9162805626432 -1.9633924420966562 0.05823869431890594 YEDEVFGDS(ph)EPELDEES(ph)EDEVEEEQEER ddPTM_BT-474_Trastuzumab_2h_R1 2 YEDEVFGDSEPELDEESEDEVEEEQEER 28 0 Q9UN86-2;Q9UN86;D6RB17 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 2 YEDEVFGDS(1)EPELDEES(1)EDEVEEEQEER;YEDEVFGDS(1)EPELDEES(1)EDEVEEEQEER 229.71 3.4745e-35 874700000.0 601030.0 625720.0 477800.0 556480.0 594120.0 646150.0 594320.0 605420.0 689750.0 661500.0 True False 597794.121260711 646546.7119442719 545070.0868879509 626930.3109428205 669777.6603748688 601483.1713734923 565570.4710771239 650599.5146604686 519770.35467647534 619282.5036613566 0.9653011634050682 1.0440254780681228 0.8801638729745425 1.0123494644790514 1.081538161364114 0.9712581379537931 0.913267317796525 1.0505698301081619 0.8393105757121507 1.0 19.240238161187285 -0.3533096598347706 5.834045758409464 0.9999999937387944 0.9794170191057381 0.005279945307409606 0.07407621711133675 0.0 0.0 0.06713597767756076 0.01582410181691264 0.4432924556677447 0.3533096598347706 -0.02058297463305636 YEDFKEEGSENAVK ddPTM_BT-474_Trastuzumab_2h_R1 6 YEDFKEEGSENAVK 14 1 J3KQ32;Q9NTK5;Q9NTK5-2 J3KQ32 OLA1 Obg-like ATPase 1 0 ;;;;; 231.58 4.4501000000000004e-13 6531890000.0 6577890.0 4845340.0 4354600.0 4032140.0 4173500.0 6725210.0 6821830.0 6283930.0 10340640.0 6461890.0 False True 6542475.371112282 5006614.212830114 4967689.829138277 4542608.5105753755 4704970.486727446 6260312.062141486 6491832.020978686 6752868.7657499835 7792327.829476982 6049486.647897641 1.0814926541553684 0.8276097633127345 0.8211754349213553 0.7509080976571878 0.7777470652592563 1.0348501329971713 1.0731211421443128 1.1162713728935638 1.288097368094039 1.0 22.528381291553544 2.5213281272101744 2.960513147806129 1.125088547932775 0.8437704346934543 0.5788327487638403 0.10813347447408128 0.18492835642813313 3.2487936093719707 0.03934221269466553 0.0347157279783542 332.14531211763597 -2.5213281272101744 -0.28131811323932077 YEDFSNLGTTHLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YEDFSNLGTTHLLR 14 0 H3BP04;H3BSJ9;H3BRG4;P22695;A0A087WVZ4;H3BUE4;H3BUI9 H3BP04 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial 0 ; 198.74 2.1627e-08 356800000.0 197784.0 271970.0 281940.0 225040.0 305680.0 481250.0 238110.0 176928.0 326870.0 299580.0 False True 196719.15291986812 281022.3570406631 321634.70133358845 253530.04092612883 344606.53609269095 447982.3202406459 226591.7096314677 190131.2657821799 246317.26833359874 280460.5479166581 0.7014147065644518 1.002003166321175 1.1468090742986272 0.9039775569484662 1.2287166186207927 1.5973095808604378 0.8079272158407175 0.6779251741270913 0.8782599555028845 1.0 18.097438317185134 2.0585024551149487 24.999999473297137 0.797922802283382 1.101143392694126 0.21842903249832313 0.2312392776251862 102.24339825829728 43691.23443640813 0.08964330073765012 0.0662059577028124 114.42013480960244 -2.0585024551149487 0.3032205904107441 YEDFVVDGFNVLYNK ddPTM_BT-474_Trastuzumab_2h_R1 1 YEDFVVDGFNVLYNK 15 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;J3KNK7;H3BNL6;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 213.73 5.203400000000001e-10 39267000.0 96754.0 99674.0 89333.0 87528.0 94723.0 101790.0 107790.0 101150.0 119740.0 104400.0 False True 96233.08721438008 102991.58883579464 101910.3099036444 98609.0358255519 106785.41258279246 94753.49688788637 102575.78590221293 108698.3266292926 90231.68143379666 97737.1026186631 0.9846116227718436 1.0537614281204217 1.042698291367033 1.008921209893962 1.092578045815751 0.9694731514354611 1.0495071283464246 1.1121500813605705 0.923208065475912 1.0 16.57661871659113 4.752400233385776 22.55229336936708 1.036035257336868 0.9846114858256982 0.03754539817736635 0.05359557767292056 1590.2625980611256 2591223.9974102993 0.012234253719488313 0.21447765255887571 56545.78445592751 -4.752400233385776 -0.051423771511169836 YEDHTIFHDISLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YEDHTIFHDISLR 13 0 P82675 P82675 MRPS5 28S ribosomal protein S5, mitochondrial 0 ; 210.41 1.7439e-08 180388000.0 125758.0 140997.0 165415.0 143991.0 179544.0 272890.0 143098.0 39264.0 176764.0 147861.0 False True 125080.93290102728 145689.9999105137 188703.9941870456 162220.24583627022 202407.86415933687 254025.75661396308 136175.80305255446 42194.079058552124 133202.88071624862 138424.38438982892 0.903604761923853 1.052487974230201 1.3632279819689854 1.171905127491322 1.4622269410952806 1.835122892066322 0.9837558870340212 0.30481680842968906 0.9622790182770431 1.0 17.078738580269608 2.000211070193538 24.999999892710658 0.6699135644395682 1.3014356055958392 0.39841160360349115 0.29652098980942915 6.2141985550496806 735959.3749355966 0.11463523202093613 0.08383379625402655 100.0486125201792 -2.000211070193538 0.631522041156271 YEDICPSTHNMDVPNIK ddPTM_BT-474_Trastuzumab_2h_R1 7 YEDICPSTHNMDVPNIK 17 0 P63241;P63241-2;I3L397;I3L504;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 P63241 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 0 ;;;;;; 270.17 4.3772e-29 2692070000.0 5661710.0 6003310.0 5929335.0 5612554.0 6023328.0 7685860.0 6749480.0 6912851.0 7939340.0 7353120.0 False True 5631227.982435122 6203126.544272472 6764133.829296279 6323102.760931877 6790363.117737889 7154554.588768348 6422981.866882518 7428723.044366121 5982796.038705515 6883837.586277247 0.8180361479853665 0.9011145987288028 0.9826108975581302 0.9185432807910546 0.986421168807687 1.0393264656665882 0.9330524996241292 1.0791543163620085 0.869107669046705 1.0 22.714781628899196 5.996838409392974 0.6701901308090527 0.9915054170014523 4.6186962097160194e-10 0.4266306422356839 0.05721818709415436 12.272300737309791 1.136026918794873 0.020989261093431143 13.589960079004989 992746.6023873279 -5.996838409392974 -0.9915054165395827 YEDKPEPEVDALGS(ph)PPALLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YEDKPEPEVDALGSPPALLK 20 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 YEDKPEPEVDALGS(1)PPALLK 116.08 6.0588e-05 72828000.0 208240.0 167900.0 146060.0 137440.0 125920.0 184600.0 173870.0 157950.0 227310.0 177960.0 True False 207118.8589776392 173488.45000230672 166623.97842372124 154839.88990795918 141955.16561368646 171839.0365016586 165459.24385209894 169737.0310538483 171292.49629794792 166602.44044077862 1.2431922271346485 1.0413319849535807 1.0001292777157744 0.9293974896063986 0.8520593410163556 1.0314316887977484 0.9931381762136549 1.0188147940977126 1.0281511834086035 1.0 17.34605000830967 4.774426360635824 2.0702295130432464 0.9800584499595951 1.3329009931222453 0.7016774104817681 0.05123965652924848 0.46525700302177814 2.0314353414351993 0.01410785986971978 0.31793511749037656 59487.588051588624 -4.774426360635824 0.3528425431626502 YEDRVPMYEEQWSYYDDKQPYPSRPPFDNQHS(ph)QDLDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEDRVPMYEEQWSYYDDKQPYPSRPPFDNQHSQDLDSR 38 3 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 YEDRVPMYEEQWSYYDDKQPYPSRPPFDNQHS(1)QDLDSR 251.22 1.3168999999999996e-51 693910000.0 152740.0 134680.0 120700.0 133400.0 138620.0 176920.0 140710.0 141820.0 229100.0 184320.0 True False 151917.66481100934 139162.74238422065 137693.51085679294 150288.4263221897 156272.4353348889 164689.93682488296 133903.31973560047 152403.3285473681 172641.37478271933 172556.53979570867 0.8803935509535953 0.8064761993314002 0.7979617058838199 0.8709517848475498 0.9056303256886197 0.9544114469371079 0.7759967828175616 0.883208070397099 1.0004916358841636 1.0 17.396709626576197 1.28027287223137 4.551185769711135 1.0031005363738514 0.8562679489183547 0.5599439016035994 0.05034029900631912 0.14322903021764952 5.910585376590013 0.041069295591078483 0.013135012928064157 19.066583170998587 -1.28027287223137 -0.14683258745549677 YEDRYDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YEDRYDR 7 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 ;; 194.2 0.00044284 4044970000.0 3524470.0 4090760.0 3691330.0 3931150.0 3849280.0 4112390.0 3662010.0 3581860.0 4462040.0 3869020.0 False True 3505494.6451254315 4226918.473683364 4211037.178384466 4428833.18693011 4339462.991529951 3828110.1588247884 3484864.586063289 3849156.5815165383 3362430.0302727385 3622095.831165329 0.9678083652462658 1.1669814026768712 1.1625968430077838 1.222726673552762 1.19805305927917 1.056877105759286 0.9621127514293599 1.062687670601514 0.9283106209785044 1.0 21.788393286047935 2.5267578551821215 4.7602793492967255 1.0002603528044753 1.149625645307785 0.5056091869375725 0.07201762934471038 0.18028998158034407 8.970328232831475 0.024437300740866606 0.022326722805771214 336.323996601539 -2.5267578551821215 0.14936529250330977 YEDYDYR ddPTM_BT-474_Trastuzumab_2h_R1 4 YEDYDYR 7 0 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 0 ;;; 157.9 0.0033611 8006500000.0 11019200.0 13618600.0 11538800.0 11733200.0 11642500.0 12745800.0 12121500.0 11263800.0 13967400.0 12208900.0 False True 10959873.85154822 14071886.868382452 13163362.742952446 13218621.916967904 13125103.364496052 11864712.846385911 11535136.73637325 12104361.95241747 10525321.423571164 11429717.54943483 0.9588927988942436 1.2311666327291064 1.151678743242727 1.1565134361191218 1.148331383319709 1.038058271787529 1.009223253897786 1.0590254658581655 0.9208732742561616 1.0 23.4462864164022 2.6358342944139403 3.6430126765715523 1.0097501733733099 1.13793227646685 0.42581582796503903 0.07209210620919185 0.23469749073720358 5.739790618807442 0.023375339530330223 0.021979631470437296 432.3488363374116 -2.6358342944139403 0.12818210309354017 YEEALSQLEESVKEER ddPTM_BT-474_Trastuzumab_2h_R1 1 YEEALSQLEESVKEER 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 0 173.28 3.9007e-09 81894000.0 35685.0 38566.0 33618.0 30683.0 39801.0 43637.0 44559.0 37808.0 59683.0 47297.0 False True 35492.87592497622 39849.64599636068 38351.12218710571 34567.46465400113 44869.42143099061 40620.47690044892 42403.51093808981 40629.42494513394 44974.924361226665 44278.46496700108 0.8015832516196667 0.8999780373158598 0.8661348629788145 0.7806834469027516 1.0133463629425714 0.9173867461467261 0.957655396809519 0.9175888318489221 1.015729077210437 1.0 15.434317587602022 3.235766310811411 24.99999213582003 0.95968005314186 0.8436608351033188 0.6692173934689535 0.04541494361724938 47.83035081773895 427927.7080191525 0.012644499243814411 0.01576234482805317 1720.9423052598397 -3.235766310811411 -0.1160192180385412 YEEDMYWR ddPTM_BT-474_Trastuzumab_2h_R1 2 YEEDMYWR 8 0 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ; 120.46 0.0034851999999999995 695130000.0 655720.0 830310.0 798890.0 756180.0 714030.0 830310.0 798240.0 670480.0 833940.0 800830.0 False True 652189.6763773406 857946.3664170051 911366.7679236386 851912.3104671176 804957.4881126164 772912.6240395015 759626.081627074 720514.6222284538 628426.6612234877 749720.3437749427 0.8699106030569718 1.144355189959405 1.2156089607156508 1.13630678097599 1.0736769980917782 1.0309345750813999 1.0132125771087586 0.9610445124118758 0.8382147642669999 1.0 19.515993024861913 2.121952362288471 1.2875057215592134 0.9232955826564028 1.1002620756762485 0.3375979504175105 0.0924592809496439 0.49038389269769356 1.5363655412356503 0.06306816529444544 0.03258693195439943 132.41962762915838 -2.121952362288471 0.17696649301984568 YEEEEEQSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YEEEEEQSR 9 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 ;; 268.9 1.3082e-15 2945820000.0 1459141.0 1613484.0 1442750.0 1606971.0 1579306.0 1532698.0 1531452.0 1406049.0 1809430.0 1491703.0 False True 1451285.1469818049 1667187.8395683272 1645876.659392194 1810413.363833552 1780421.257819953 1426746.194843005 1457369.816045234 1510975.516152155 1363520.2216197993 1396501.2374288107 1.0392294027994278 1.1938319815869947 1.1785715724982275 1.2963922374797332 1.2749156320820756 1.0216576660324914 1.0435864838390636 1.081972199991824 0.976383110214972 1.0 20.41338542130338 2.7253569258322403 24.997583266304055 1.0356171351401802 1.2009787927589273 0.6014811303384251 0.06962099740319802 591.558676794107 1119953.5574446758 0.023472996520044524 0.022252791997186237 531.3209320663203 -2.7253569258322403 0.1653616576187471 YEEIVK ddPTM_BT-474_Trastuzumab_2h_R1 8 YEEIVK 6 0 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;;; 129.96 0.037149 14358530000.0 22046530.0 21983290.0 19998580.0 19393170.0 19296080.0 23086780.0 22169910.0 22120260.0 29336870.0 24025020.0 False True 21927833.932079736 22714990.518470578 22814206.2332265 21848343.333573468 21753321.411173288 21490845.239034474 21097466.756019346 23770986.125604305 22107191.482417777 22491722.65474552 0.97492905584327 1.0099266680081507 1.01433787813549 0.9713948401797359 0.9671700894188096 0.9555001886216186 0.9380102662597968 1.0568770783143582 0.9829034361560292 1.0 24.422890826451415 1.7387105219136578 24.999999999979508 1.0173673457900436 0.9773894714057326 0.2724957394218819 0.027659624012421797 0.05309604082603467 4641.635908660989 0.013350308949610467 0.007403364138805624 54.79116338156861 -1.7387105219136578 -0.039977874384310996 YEELFPAFSDSR ddPTM_BT-474_Trastuzumab_2h_R1 7 YEELFPAFSDSR 12 0 P54920;M0R0Y2;M0R2M1;M0R213;M0R0I4 P54920 NAPA Alpha-soluble NSF attachment protein 0 ;;;;;; 229.53 1.8535e-11 959676000.0 675898.0 862537.0 753392.0 752757.0 704410.0 804382.0 840625.0 710041.0 888148.0 794451.0 False True 672259.0402673281 891246.0226303728 859463.0449993443 848055.9590180863 794112.4381348224 748776.965651555 799960.7572506506 763027.864935142 669275.8259734723 743748.457016279 0.9038795763883029 1.1983164660345176 1.1555829620773688 1.1402456717964313 1.0677164176186533 1.0067610340402575 1.075579720138016 1.0259219467778218 0.8998685236382593 1.0 19.504455244726575 1.965090746809457 0.893126864014237 0.9630419152603664 1.1033525792184182 0.2561038361839615 0.08229014379080614 0.7627794938828958 1.1236480184341346 0.06811260399997432 0.03257622288448043 92.27642206725099 -1.965090746809457 0.1403106639580518 YEEPNAWR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEEPNAWR 8 0 Q14562 Q14562 DHX8 ATP-dependent RNA helicase DHX8 0 82.45200000000001 0.050066 0.0 59630.0 74529.0 57760.0 68924.0 65867.0 65997.0 60344.0 64367.0 67280.0 66448.0 False True 59308.95870551581 77009.6527112681 65892.10594107992 77649.7713330631 74254.77202570428 61434.78273022736 57424.930183533965 69170.39238900322 50699.745505811254 62207.231751005136 0.9534093872382853 1.237953378467509 1.0592354632468475 1.248243478248145 1.1936678411108446 0.9875826491706039 0.9231230608908441 1.1119349059908228 0.8150136901887144 1.0 15.92479468667132 2.725837669601295 23.144815197925077 0.98208245146275 1.145720048582681 0.38550894015297443 0.10694911915271549 306.76144709395373 558039.9114016843 0.03302337004875805 0.03136166150940037 531.9094052438958 -2.725837669601295 0.1636375971199311 YEESYGEALEGFSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEESYGEALEGFSR 14 0 Q8N0Z6 Q8N0Z6 TTC5 Tetratricopeptide repeat protein 5 0 181.66 3.7491e-06 47624000.0 32964.0 43407.0 33247.0 40394.0 45062.0 47633.0 50921.0 47641.0 40881.0 44800.0 False True 32786.52548664469 44851.77575491438 37927.88861189555 45507.87625830989 50800.37859660055 44340.242826021116 48457.75669288965 51196.21333609622 30806.42532733456 41940.825644790326 0.7817329530973901 1.0694061231597531 0.9043190740477651 1.085049604023774 1.211239354867367 1.0572095838444429 1.155383947452375 1.2206772887518382 0.7345211939374678 1.0 15.356067642078852 5.501830719583198 0.9163087169620142 1.0861084044702114 1.4280663051843806e-13 0.2134355070283852 0.14169156184927148 10.229632335706512 2.4461073791935197 0.04338052754454707 15.4655370187895 317563.60218287684 -5.501830719583198 -1.0861084044700686 YEEVAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEEVAR 6 0 P06753-2;A0A087WWU8;P06753-6;P06753-5;P06753-7;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6;H0YKX5;P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3;A0A2R8YE05;K7ENT6;A0A2R8YEU4;A0A5F9UN72;P67936-2;A0A2R8YHD2 P06753-2;P06753-3;J3KN67;H7BYY1;P09493-3;P67936;P67936-2 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain 0 103.29 0.080996 639320000.0 1081100.0 1096100.0 1201400.0 1093500.0 1016600.0 924010.0 1201000.0 1170500.0 1638900.0 1301700.0 False True 1075279.4777215004 1132583.0258935592 1370546.6772440022 1231936.9878809184 1146057.984139721 860135.3635855779 1142903.041734462 1257848.6536785665 1235015.0551348708 1218624.3915585605 0.8823715372595414 0.9293946795575307 1.1246670317267657 1.0109242818497435 0.9404521951788354 0.7058248378612438 0.9378632576628023 1.0321873272779647 1.0134501358169496 1.0 20.216822091559145 1.7628902520074192 8.056990220334178 1.016432881908757 0.9347618011699591 0.12648800744846334 0.0988065588479135 0.38777263466897705 81.10001348388462 0.05161459926491687 0.028220727014961155 57.928229092385806 -1.7628902520074192 -0.08167108073879781 YEEVSVSGFEEFHR ddPTM_BT-474_Trastuzumab_2h_R1 9 YEEVSVSGFEEFHR 14 0 Q9BRA2;I3L2R6;I3L0K2;I3L3M7 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 0 ;;;;;;;; 249.66 3.7083e-18 3635693800.0 2216008.1 2713238.5 2410867.0 2492491.3 2457331.1 2703798.1 2541473.0 2319236.0 2807432.4 2775299.6 False True 2204077.358611245 2803547.0032851947 2750296.1179683777 2808040.4430191074 2770257.6498424597 2516890.9014031165 2418532.2416203194 2492309.16716178 2115578.3026868147 2598177.6034744726 0.848316664597444 1.0790436340980258 1.0585481586364538 1.0807730923644292 1.0662310560055128 0.968713954749416 0.9308571663407773 0.9592528100576659 0.8142546913874206 1.0 21.309068621701268 2.5057449761239248 3.5767933670692176 0.9276752627527148 1.0340041049912443 0.27113125380565073 0.07719214730091749 0.2999348998973684 8.075735203161434 0.026563784859394448 0.02350697352602993 320.4387110393428 -2.5057449761239248 0.10632884223852945 YEFGIFNQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YEFGIFNQK 9 0 P11216;P11217 P11216 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form 0 ; 148.05 0.00021154 339500000.0 290057.0 363397.0 373463.0 338962.0 414158.0 391767.0 395800.0 302603.0 414990.0 400058.0 False True 288495.3653403622 375492.44946687453 426043.34420141205 381874.5544454429 466898.5663932108 364685.0694103206 376653.6418971693 325184.7724468994 312721.27508110274 374525.95593311475 0.7702947172822477 1.0025805782441748 1.137553585945583 1.0196210660327119 1.2466387415792153 0.9737244205190638 1.005681010702592 0.8682569720347312 0.8349789116804244 1.0 18.5147061802994 1.9029410860223999 2.8621815790289324 0.8882870856660997 1.037852995602793 0.1659341904616617 0.1212417661713628 0.41603617121597647 6.077521663168749 0.06537892704801478 0.0345290194332447 79.97257612927946 -1.9029410860223999 0.1495659099366934 YEFTDALLCHDDELEGR ddPTM_BT-474_Trastuzumab_2h_R1 3 YEFTDALLCHDDELEGR 17 0 A0A0A0MTR2;Q8N543;H3BR79;H3BUA6;Q8N543-2 A0A0A0MTR2 OGFOD1 Prolyl 3-hydroxylase OGFOD1 0 ;; 278.08 8.16e-36 504320000.0 478720.0 591020.0 498850.0 522150.0 509660.0 544490.0 539560.0 510840.0 650870.0 562770.0 False True 476142.6247107915 610691.7434208655 569083.743918071 588254.1364627541 574562.1800085093 506850.687891593 513459.42148063815 548961.4747929601 490471.80971116753 526853.5367883625 0.903747610034662 1.1591300063079597 1.0801554970801541 1.1165420660335363 1.0905539013953918 0.9620333783489344 0.9745771559409597 1.0419622085852644 0.9309452731418038 1.0 19.00704242848733 2.744146444820132 24.820588439050006 0.9886291827520568 1.0781230483042166 0.2916345213117594 0.06768274339737534 523.8865845472044 2327885.5234004455 0.02006385173741053 0.02074071218248397 554.8127652042697 -2.744146444820132 0.08949386555215977 YEHANDDK ddPTM_BT-474_Trastuzumab_2h_R1 4 YEHANDDK 8 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 0 ;;; 120.99 0.0014525 2582180000.0 3169450.0 2621530.0 2410720.0 2350330.0 2264660.0 2264700.0 2983000.0 2533300.0 3916550.0 2841300.0 False True 3152386.033359 2708786.0413016505 2750128.4216461275 2647881.537015233 2553051.027308536 2108146.619530369 2838700.893833385 2722347.709836746 2951368.731581226 2659965.8014406883 1.1851227679888243 1.0183537095982664 1.033896157671127 0.9954569850413453 0.9598059591314125 0.7925465125861981 1.0671945076496436 1.0234521467765754 1.109551382195481 1.0 21.342976266776546 5.3906198855464655 1.306377672990298 0.9930007094077916 1.8108932864284688 0.3320598913811027 0.07926289451179562 7.949913842295909 3.489931583850467 0.022716064272674297 13.16959196824659 245821.5119666728 -5.3906198855464655 0.8178925770206772 YEIMDGAPVKGESIPIR ddPTM_BT-474_Trastuzumab_2h_R1 2 YEIMDGAPVKGESIPIR 17 1 O75436 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ; 250.95 1.3545e-21 345960000.0 668050.0 759070.0 707570.0 713690.0 672810.0 849650.0 810350.0 737350.0 1047310.0 897060.0 False True 664453.2930273331 784335.186082496 807189.7056913086 804043.0808237151 758488.365442697 790915.6953609653 771150.2746623815 792374.801187434 789214.4837350054 839808.8627882953 0.7911958571397371 0.933944878217148 0.9611588320362731 0.9574119974801978 0.9031678505087435 0.9417806008083827 0.9182449826762287 0.943518026895581 0.9397548879332986 1.0 19.679701487941074 4.737077794690565 5.228103536983969 0.9414912852101065 0.7848748158486051 0.7761593605605281 0.02466103088311946 0.06627968619610088 6.27418254516694 0.00551581825927686 0.03738812208559353 54585.56308501947 -4.737077794690565 -0.15661646936150142 YEKDIAAYR ddPTM_BT-474_Trastuzumab_2h_R1 4 YEKDIAAYR 9 1 P26583;P09429 P26583;P09429 HMGB2;HMGB1 High mobility group protein B2;High mobility group protein B1 0 ;;; 131.82 0.00029406 2723850000.0 2248690.0 3694760.0 3513600.0 3535430.0 2994620.0 3066110.0 3909560.0 2740180.0 5518000.0 3825230.0 False True 2236583.302892945 3817737.853070412 4008284.3392413217 3983015.0755041996 3375967.1064966493 2854157.032546592 3720439.6468304587 2944666.145952103 4158162.8374118027 3581100.546455831 0.6245519425882813 1.0660794924757915 1.119288410711693 1.1122321263629804 0.9427177658660829 0.7970055561191418 1.0389095750222734 0.8222796617275663 1.1611410468569734 1.0 21.771971595057952 4.745734775311701 24.308846760329658 0.9930667157834525 0.6245516844587552 0.4881907509276765 0.11662119218265841 535.899427111411 1815768.0923196347 0.028903156082424067 0.28959574400387955 55684.557813238585 -4.745734775311701 -0.3685150313246973 YEKDVADYK ddPTM_BT-474_Trastuzumab_2h_R1 1 YEKDVADYK 9 1 O15347;E7ES08;E7EQU1 O15347 HMGB3 High mobility group protein B3 0 99.522 0.0048153 555110000.0 809930.0 861520.0 751950.0 777710.0 751080.0 1172400.0 1136400.0 1042200.0 1683100.0 1141500.0 False True 805569.4268716818 890195.1724001626 857818.023933432 876168.006259597 846725.5860000607 1091354.7475327435 1081427.990530425 1119974.2561843672 1268322.557384526 1068648.4927126833 0.7538207674132444 0.8330102727609426 0.8027129872760367 0.8198841922618643 0.7923331121262445 1.021247636594164 1.0119585606538422 1.0480286678189172 1.1868472804981787 1.0 20.027355959133313 2.6757349748900228 3.501199843784594 1.0582653322847575 0.8018564403719666 0.859013924829173 0.051412054611281795 0.08741872919253435 2.1383260941642104 0.01726162080620028 0.016536183427921614 473.9526707563038 -2.6757349748900228 -0.2564088919127909 YELDTWYHSPYPEEYAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YELDTWYHSPYPEEYAR 17 0 O95251-4;O95251;O95251-2;E7EUP3;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 151.48 2.483e-07 302740000.0 118120.0 146020.0 149070.0 134130.0 149760.0 159310.0 152210.0 137510.0 167050.0 148160.0 False True 117484.05504436587 150880.1874290459 170057.7602603322 151110.8442473413 168831.04830293605 148297.2746754021 144847.02080133403 147771.69446163147 125882.76585531772 138704.30195384216 0.8470108957648773 1.0877830413598535 1.226045319898757 1.0894459805408758 1.2172012397936973 1.0691613207840682 1.0442864335205408 1.0653721072819122 0.9075620877080569 1.0 17.08165300839412 1.4030251031114722 3.438402929257501 0.955021882170943 1.092047547654876 0.19464414635991945 0.10084291550168492 0.36276053624389165 7.271386011137381 0.07814747240321339 0.026231167585591273 25.29444199281438 -1.4030251031114722 0.13702566548393313 YELGRPAANTK ddPTM_BT-474_Trastuzumab_2h_R1 2 YELGRPAANTK 11 1 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 ; 148.76 3.1627e-05 1013820000.0 805570.0 838760.0 769550.0 737240.0 733410.0 891810.0 954440.0 845100.0 1168620.0 929560.0 False True 801232.9006272416 866677.6195588739 877895.9509514904 830574.5084090799 826805.4162383552 830161.2737949308 908270.090885129 908165.6533308474 880629.2597057235 870234.684963645 0.9207089931846534 0.9959125216838265 1.0088036780425105 0.9544258839140365 0.9500947623949233 0.9539510296921936 1.0437070672758497 1.0435870564832601 1.0119445649796328 1.0 19.731044993990285 2.2389083235285847 24.999994643142006 1.0306098086877227 0.966405789328988 0.5563209102745814 0.02635605544727965 6.794175270878844 488552.1337541388 0.00976346205675517 0.007701862341832563 173.34380427076462 -2.2389083235285847 -0.06420401935873465 YELHLK ddPTM_BT-474_Trastuzumab_2h_R1 6 YELHLK 6 0 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed 0 ;;;;; 99.511 0.038715 14989050000.0 21469900.0 22195600.0 20547300.0 18830000.0 17716600.0 21557600.0 22003100.0 20243100.0 30885600.0 23108700.0 False True 21354308.443930123 22934367.12847646 23440181.239666793 21213876.06931663 19972703.995484754 20067373.85313192 20938725.992995437 21753742.914378975 23274257.725836538 21633882.98164655 0.9870770061041003 1.0601133022644709 1.083493946026825 0.9805856899250939 0.9232140162923558 0.9275900156322561 0.9678672113905368 1.0055403800064053 1.0758243328570107 1.0 24.36678929648315 3.7100844949504053 21.18892812165028 0.9791661200649759 1.0452165632251744 0.2617211729244159 0.04632510729473487 138.71338948519522 103215.54252843956 0.013202992391423158 0.02046510348060137 5129.61174375001 -3.7100844949504053 0.06605044316019848 YELISETGGSHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 YELISETGGSHDK 13 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6;Q96SI9;Q96SI9-2 Q12906;Q12906-7;Q96SI9 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein 0 ; 242.48 6.180799999999999e-17 805760000.0 975460.0 810630.0 745340.0 715980.0 733170.0 986200.0 924660.0 925330.0 1200740.0 1012020.0 False True 970208.2317437945 837611.3295138173 850277.3933885826 806622.9945889158 826534.8536609483 918026.3152650894 879930.6632557767 994382.8233305312 904833.7160916721 947432.0171660869 1.0240399460489362 0.8840859442551245 0.8974547809054326 0.8513782308113755 0.8723948934439008 0.968962731501354 0.9287533536050249 1.0495558576380828 0.9550381448984246 1.0 19.853662901080888 2.211435287798654 1.7998259337806164 1.0024236252119447 0.9037284417051535 0.3332158525722958 0.05236054644803729 0.35982725704566976 2.316148127604162 0.027162205096497846 0.01670759014154716 162.71788392248394 -2.211435287798654 -0.09869518350679118 YELISETGGSHDKR ddPTM_BT-474_Trastuzumab_2h_R1 3 YELISETGGSHDKR 14 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6;Q96SI9;Q96SI9-2 Q12906;Q12906-7;Q96SI9 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein 0 ;; 188.09 5.664899999999999e-07 6666020000.0 4252270.0 4255280.0 3797050.0 3781670.0 4089580.0 4962810.0 4388710.0 4192250.0 5518600.0 5052970.0 False True 4229376.250791607 4396914.4224289255 4331641.635449754 4260429.034256641 4610363.772160259 4619742.625898137 4176411.3307997026 4505096.982814159 4158614.9754513903 4730485.128534739 0.8940681845250089 0.9294848843105578 0.9156865559772881 0.900632581753048 0.9746069688180825 0.976589609812196 0.8828716753821273 0.9523541159952038 0.8791096182432171 1.0 22.17355671412389 3.280525305418558 24.999624892933376 0.9399264254174944 0.911770567612569 0.16118142961407378 0.03745758730974136 321.1284947312691 191303.6368439343 0.01004383640427353 0.013599300686776802 1907.7668822824514 -3.280525305418558 -0.028155857804925355 YELYSR ddPTM_BT-474_Trastuzumab_2h_R1 4 YELYSR 6 0 A0A0G2JQD6;Q8IXL6 A0A0G2JQD6 FAM20C Extracellular serine/threonine protein kinase FAM20C 0 ;;; 126.05 0.041086 2512740000.0 1356640.0 1424490.0 1439810.0 1414790.0 1194470.0 1303840.0 1495870.0 1080800.0 1407160.0 1432230.0 False True 1349336.0009768729 1471903.288527609 1642522.7329471319 1593902.2689383114 1346578.6743216324 1213708.6097092214 1423509.0533216735 1161454.7841911956 1060384.2729779636 1340823.8552062064 1.006348444456455 1.0977603678607313 1.2250100761330256 1.1887484420488506 1.004292002333551 0.9051961635352648 1.061667457507124 0.8662247316688548 0.790845321598851 1.0 20.354688291345152 3.044689187344547 4.248257738266316 0.925604605133018 1.1331395968785933 0.5516854177171246 0.08682895962473827 0.16412944070481544 6.433797024187426 0.027174324664536863 0.03219216478853273 1108.381293237599 -3.044689187344547 0.20753499174557533 YEMACAIADAFNLPSSHLRPITDS(ph)PVLGAQRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YEMACAIADAFNLPSSHLRPITDSPVLGAQRPR 33 2 Q9NZL9;Q9NZL9-2 Q9NZL9 MAT2B Methionine adenosyltransferase 2 subunit beta 1 YEMACAIADAFNLPS(0.004)S(0.004)HLRPIT(0.072)DS(0.92)PVLGAQRPR;YEMACAIADAFNLPS(0.003)S(0.012)HLRPIT(0.247)DS(0.738)PVLGAQRPR 205.58 1.7116e-27 1990010000.0 308630.0 410820.0 427160.0 436300.0 479930.0 511120.0 474880.0 423220.0 494740.0 477180.0 True False 306968.37037201645 424493.895354066 487300.4150587207 491535.5352651537 541046.2407320252 475787.4774470629 451908.2401822319 454802.8254676145 372817.9561763534 446725.9638656482 0.6871513975049287 0.9502333190594033 1.0908262659326315 1.1003066197714486 1.2111367695089772 1.0650544538086326 1.0116005711236034 1.018080125748848 0.8345562746124099 1.0 18.769030581443456 4.6861747219693 2.776912419846184 1.0473656841356647 0.6417655005870776 0.5792074726475863 0.09063255613484118 0.26993698107363767 3.0579617494789058 0.023542776919787234 0.23468105086266225 48548.37769256702 -4.6861747219693 -0.40560018354858707 YENGCAYFHEEER ddPTM_BT-474_Trastuzumab_2h_R1 1 YENGCAYFHEEER 13 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q86XE2;Q6P996-2;J3KNK7;H3BNL6;Q6P474;Q6P996-4 H3BND4;Q6P996-4 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 0 112.62 0.00037634 0.0 91440.0 121280.0 104630.0 100880.0 102480.0 114880.0 109740.0 102720.0 110680.0 112140.0 False True 90947.6971999391 125316.73148469182 119360.99453973687 113651.39765654063 115530.2205534514 106938.61599843188 104431.45695248943 110385.48800159115 83404.39703601654 104983.12919211575 0.8663077382034187 1.1936844752966567 1.1369540559351217 1.0825682043498839 1.1004646312459863 1.01862667669905 0.9947451343480458 1.0514593044715714 0.7944552394069829 1.0 16.6797979796002 1.7962057238769902 1.1506562381220546 0.9240884078979632 1.0813760068954354 0.2433040845218728 0.09941082547126402 0.6331765498711004 1.5567330425611645 0.0790025660573669 0.032098614488775365 62.546890518934575 -1.7962057238769902 0.15728759899747224 YEPFSFADDIGSNNCGYYDLQAVLTHQGR ddPTM_BT-474_Trastuzumab_2h_R1 5 YEPFSFADDIGSNNCGYYDLQAVLTHQGR 29 0 P54578-2;P54578;A6NJA2;P54578-3 P54578-2 USP14 Ubiquitin carboxyl-terminal hydrolase 14;Ubiquitin carboxyl-terminal hydrolase 0 ;;;; 340.92 1.1552999999999994e-105 1643732000.0 714687.0 852322.0 757009.0 819750.0 777161.0 825902.0 806390.0 711734.0 897722.0 864689.0 False True 710839.2046011912 880691.0225304711 863589.2871598165 923530.2659491394 876127.8467558629 768809.3387041859 767381.8349910515 764847.2051920221 676490.4419585002 809503.8077225022 0.8781171846505592 1.0879393205181462 1.0668131254249207 1.1408596934799415 1.0823023170462955 0.9497291197025891 0.9479656891918041 0.9448345985473261 0.8356853117983122 1.0 19.626678341091214 2.666699903668717 5.121039331010159 0.9327505637740775 1.0589859948336016 0.3749617290308551 0.07438002004096535 0.22606214450781248 11.161668508753175 0.024287304233311182 0.022974041031303162 464.19440727592007 -2.666699903668717 0.12623543105952406 YEPQS(ph)PGYEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 YEPQSPGYEPR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 YEPQS(1)PGYEPR;YEPQS(1)PGYEPR;YEPQS(1)PGYEPR;YEPQS(1)PGYEPR 200.76 4.7978e-08 5420060000.0 1419460.0 1496990.0 1437540.0 1531700.0 1399130.0 1490140.0 1543930.0 1382930.0 1740440.0 1505210.0 True False 1411817.7850768336 1546816.4072004354 1639933.1366783245 1725613.0629512602 1577300.912206776 1387130.1292122519 1469244.207514642 1486131.2589762486 1311531.8827011613 1409146.209124885 1.0018958827229203 1.097697596732029 1.1637778436751172 1.2245805664288796 1.1193309125717474 0.9843762983783594 1.0426485186566121 1.05463240744846 0.9307280353226478 1.0 20.42638987879713 2.773795333888894 8.751913489710889 1.0132235056540744 1.128375936622868 0.4769517570526529 0.06157805024917243 0.3659090118460518 86.50858194936578 0.020009075042455523 0.021088133301238928 594.0121577994396 -2.773795333888894 0.11515243096879368 YEPSDKDRQS(ph)PPPAK ddPTM_BT-474_Trastuzumab_2h_R1 8 YEPSDKDRQSPPPAK 15 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK 167.92 6.6968e-07 18495210000.0 15457120.0 10920190.0 10480620.0 9470150.0 10006730.0 14613560.0 13578260.0 13542870.0 20037650.0 14252810.0 True False 15373900.583367473 11283661.922755752 11956200.196817886 10669070.019003635 11281027.750964452 13603358.993820034 12921427.689809622 14553507.728700444 15099639.648253847 13343183.463355444 1.1521913511561175 0.8456499120876376 0.896053046834989 0.799589546850213 0.845452495047054 1.0194987598858334 0.9683916679476007 1.0907073089918107 1.131636965775235 1.0 23.669599575027362 2.2057052327188016 1.6326890706786155 1.0774795975773523 0.9021055954670311 0.3090840202886622 0.0992192874745131 0.41755779874292276 2.18859891317371 0.05480660169461671 0.03247394225095027 160.58509490537378 -2.2057052327188016 -0.17537400211032128 YEPSDKDRQS(ph)PPPAKR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEPSDKDRQSPPPAKR 16 3 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 YEPSDKDRQS(1)PPPAKR 110.77 0.0048007 1354100000.0 288350.0 197120.0 226960.0 179130.0 219640.0 298980.0 264330.0 246200.0 361270.0 292780.0 True False 286797.5556386964 203681.02003844368 258913.9952283156 201807.83963338725 247609.85209172542 278312.216323217 251543.3480613405 264572.69417826855 272239.8492699823 274094.5297384314 1.0463454192697226 0.7431050164803239 0.9446156969108337 0.7362709493909734 0.9033739284327188 1.0153877079882279 0.9177248021016272 0.965260760332395 0.9932334276418467 1.0 18.06431401019631 2.9932945427744677 24.99787025789578 0.9691660495617624 0.8586485553481464 0.2596964582741904 0.08790615228048311 396.6780799368818 1478819.718688319 0.023735826074286898 0.027406361490355042 984.6786980963238 -2.9932945427744677 -0.11051749421361601 YEQEKR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEQEKR 6 1 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 83.84299999999998 0.090636 277750000.0 260870.0 346590.0 334420.0 303310.0 285430.0 235030.0 333350.0 318030.0 377110.0 393780.0 False True 259465.50490538144 358126.0386319207 381503.4291692516 341709.0149009254 321777.8186238449 218782.92930110943 317224.58697933616 341763.01352361793 284176.2935151081 368648.62326798023 0.7038287641095278 0.9714563300337883 1.0348700770596038 0.9269233447062903 0.8728577792353134 0.5934727962948894 0.8605066368272787 0.9270698219186935 0.7708595002904243 1.0 18.49188684361821 4.760457016795972 22.944525192987722 0.879723739715737 0.7038281947321362 0.1665722915264326 0.12067665929661624 3536.0175514864754 3705093.5037303837 0.030166367884987978 1.2572084135827974 57604.580305390766 -4.760457016795972 -0.17589554498360083 YEQGTGCWQGPNR ddPTM_BT-474_Trastuzumab_2h_R1 6 YEQGTGCWQGPNR 13 0 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 ;;;;; 325.73 1.4857e-51 3784590000.0 612758.0 827653.0 842656.0 673348.0 579074.0 628252.0 797636.0 593163.0 896844.0 673292.0 False True 609458.9790118132 855200.9297781968 961294.6403027487 758593.787760074 652815.6414594967 584822.4179861317 759051.2994145782 637427.8350806828 675828.8132939029 630321.9281257173 0.9669011211843116 1.356768488637488 1.5250851944199204 1.2035021374169501 1.035686071402696 0.9278154414286682 1.204227975491257 1.0112734566860067 1.0721962589870573 1.0 19.265729327630517 3.381769239136594 4.444054545451729 1.0470760705847708 1.3007634823377314 0.36433779602842986 0.14464495505581146 0.21806302078572012 7.671928456547585 0.040694969544008606 0.056090219531892714 2408.625273946596 -3.381769239136594 0.2536874117529606 YESLELCR ddPTM_BT-474_Trastuzumab_2h_R1 3 YESLELCR 8 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;; 145.34 0.0013282 152890000.0 420130.0 404941.0 373391.0 342245.0 315258.0 371265.0 352068.0 358334.0 394749.0 352024.0 False True 417868.066760831 418419.21639299596 425961.20722724765 385573.1819088293 355404.23761943734 345600.3244138046 335037.12580963253 385074.7026631826 297468.3983155986 329557.5269370906 1.2679669939403266 1.2696393867310098 1.292524589518963 1.1699723125499468 1.0784285248240761 1.048679809033087 1.0166271391931763 1.168459741284227 0.902629659471812 1.0 18.330170795763657 3.413999945221595 2.081934219410126 1.0481743084347692 1.2777799451031286 0.7468293031796106 0.06325127858393474 0.1667645231257842 1.4629698766683714 0.019067851364172998 0.02974613228400652 2594.179034909961 -3.413999945221595 0.22960563666835943 YESLELCRPVLQQGR ddPTM_BT-474_Trastuzumab_2h_R1 6 YESLELCRPVLQQGR 15 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;;;; 308.84 3.8509999999999997e-56 13726990000.0 4400610.0 4957560.0 4677450.0 4405960.0 4222490.0 4720690.0 4662820.0 4135580.0 5296250.0 4825140.0 False True 4376917.604713735 5122569.387691701 5335994.302875776 4963754.08424674 4760199.072840975 4394359.811608961 4437261.582897817 4444197.979649724 3991060.153614039 4517195.434189817 0.9689458134987154 1.1340154443883301 1.1812626618916289 1.0988575005360635 1.053795245787222 0.9728071046802323 0.9823045399614558 0.9838400937919161 0.8835261196375173 1.0 22.10699590192562 2.8826527948074347 2.260755607633109 0.964456653477197 1.1045580097785748 0.5356429574466455 0.058062632972758675 0.23736337526973997 2.390593677714914 0.019897301479775472 0.021637654787607038 763.2253642035937 -2.8826527948074347 0.14010135630137777 YESLTDPSK ddPTM_BT-474_Trastuzumab_2h_R1 3 YESLTDPSK 9 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2 0 ;; 162.59 0.00014811 986815000.0 2759980.0 2275630.0 2051966.0 1867707.0 1996041.0 2594920.0 2521390.0 2594990.0 3424330.0 2664100.0 False True 2745120.5743426066 2351372.968902614 2340864.976791798 2104158.514699686 2250224.989888092 2415539.288184635 2399420.7330548316 2788641.330892219 2580449.755171144 2494074.857149238 1.100656849361898 0.9427836386556038 0.9385704563284195 0.8436629352435587 0.9022283286477336 0.9685111420214666 0.9620484029085649 1.1181065086713855 1.0346320391203627 1.0 21.250073336182723 1.8811621488224346 6.3456015724230825 1.0607104331980506 0.943600771460999 0.3142314811092404 0.06686482778703996 0.253785771296484 12.124949524486063 0.03009836911152321 0.018337689219243548 76.06102064709432 -1.8811621488224346 -0.11710966173705162 YESLTDPSKLDSGK ddPTM_BT-474_Trastuzumab_2h_R1 6 YESLTDPSKLDSGK 14 1 P08238;Q58FF7;P07900;P07900-2;G3V2J8;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2 0 ;;;;; 184.76 1.1449e-06 30124650000.0 48744770.0 43803000.0 40594830.0 39077110.0 38648400.0 54505670.0 56016960.0 52725900.0 87519300.0 56952520.0 False True 48482333.57437302 45260956.37552735 46310229.207412295 44024268.11933364 43570044.65298601 50737821.32544614 53307205.639232 56660574.39469527 65951341.21353669 53317761.41409447 0.9093092487104455 0.8488907856428249 0.8685703971654417 0.8256961086084887 0.8171769312405591 0.9516119953234509 0.9998020214168317 1.0626960489702242 1.236948804007787 1.0 25.66811287328467 2.1224455367419854 1.481500315275709 1.1129316753701215 0.8541660032359482 0.7470881408233012 0.06191699396952577 0.18919084148659115 0.7919145598366257 0.03734105177635642 0.019861990774547186 132.570085611491 -2.1224455367419854 -0.25876567213417334 YESQEPLAGQES(ph)PLPLATR ddPTM_BT-474_Trastuzumab_2h_R1 8 YESQEPLAGQESPLPLATR 19 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR 356.81 5.334899999999998e-91 19228640000.0 5700870.0 6086840.0 5590180.0 5917010.0 5754460.0 5988640.0 5947220.0 5452690.0 6392490.0 5699820.0 True False 5670177.149346204 6289436.789827513 6377228.753284397 6666102.859315299 6487256.371643373 5574659.412542214 5659530.248013334 5859597.415998788 4817146.494477452 5336052.607738591 1.062616425693227 1.178668437546189 1.1951210421043907 1.2492573348410787 1.2157407073227227 1.0447159768360574 1.0606211490129653 1.098114626437702 0.902754685643729 1.0 22.347341459337947 2.7279720300226975 22.198462805389553 1.0363798131718527 1.1848476992540427 0.5857557248632949 0.06620776130258432 123.18355589536195 258246.88275761798 0.021815501585462638 0.020820153784678615 534.5299328220055 -2.7279720300226975 0.14846788608218997 YETPSDAIEVIS(ph)PASS(ph)PAPPQEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YETPSDAIEVISPASSPAPPQEK 23 0 O75376;O75376-2;A0A088AWL3;E7EVK1 O75376 NCOR1 Nuclear receptor corepressor 1 2 YETPSDAIEVIS(0.999)PAS(0.018)S(0.982)PAPPQEK;YETPSDAIEVIS(1)PAS(0.042)S(0.958)PAPPQEK 196.15 1.6871e-24 243020000.0 127733.0 117159.0 109385.0 95461.0 102613.0 134408.0 123328.0 124402.0 162352.0 125854.0 True False 127045.29972047033 121058.56649088887 124785.45720853597 107546.35281216324 115680.15731509854 125116.69132239949 117362.15348128865 133685.50894055626 122342.52500534279 117821.88997096958 1.0782826497841218 1.0274709268431934 1.0591024913900309 0.912787537516686 0.9818222856856331 1.0619138035659357 0.9960980384053064 1.1346406764778205 1.038368379895171 1.0 16.846248074884702 1.7740305804677372 24.99999999992719 1.0719007564743244 1.0152126792739606 0.08660313613747583 0.055169770460330454 67.82751937360456 47827.510937455816 0.02560249836744737 0.014208199508531744 59.43340066537106 -1.7740305804677372 -0.05668807720036373 YETSSTSAGDRYDSLLGR ddPTM_BT-474_Trastuzumab_2h_R1 4 YETSSTSAGDRYDSLLGR 18 1 O14974;O14974-5;O14974-2;O14974-3;O14974-4;H0YIS3;H0YIM2 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 ;;; 286.34 8.2024e-40 2165680000.0 530029.0 663943.0 628820.0 647703.0 665622.0 682886.0 632930.0 629724.0 779812.0 674824.0 False True 527175.382755758 686041.9413929806 717352.3901985786 729702.1333895148 750385.0162493105 635679.6981607341 602312.7578726006 676717.2025536794 587637.7815454461 631756.1545741067 0.8344602247858575 1.085928386175312 1.1354893577288154 1.155037632963683 1.1877763450601861 1.0062105348055888 0.9533943650753112 1.0711683576868085 0.9301655033999588 1.0 19.26900828842331 2.5188249820940447 24.83745078424898 0.9986504350562208 1.0883259288482672 0.1669564758807459 0.09644570381747676 848.8058047878206 505521.0672389138 0.031959648276878666 0.030128958604071006 330.2364310421593 -2.5188249820940447 0.08967549379204642 YETVIMPVFGIATPFHIATIK ddPTM_BT-474_Trastuzumab_2h_R1 1 YETVIMPVFGIATPFHIATIK 21 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 211.49 1.4643e-22 154260000.0 109130.0 139110.0 149490.0 133410.0 130150.0 158370.0 143550.0 127610.0 190030.0 154070.0 False True 108542.4562054828 143740.1922562291 170536.8926096268 150299.69232116468 146723.83104051228 147422.25466288012 136605.93808574666 137132.90619045022 143199.65277154135 144237.1206940369 0.7525278907621054 0.9965547812143178 1.1823370557387813 1.0420319789937296 1.0172404325218771 1.0220826230689928 0.9470927971137342 0.9507462817518627 0.9928072058184227 1.0 17.138082977083048 -0.45705469991574155 7.4587650402623895 0.9999999999721405 0.9935559699718641 0.0 0.1007266249900891 0.0 0.0 0.09843197048294766 0.023200637938015467 0.3490963436024049 0.45705469991574155 -0.0064440300002763795 YEVCIR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEVCIR 6 0 F5H283;Q92563 F5H283 SPOCK2 Testican-2 0 99.511 0.090068 132350000.0 169570.0 182390.0 161710.0 173260.0 193200.0 218960.0 191310.0 179160.0 174790.0 201590.0 False True 168657.0539609983 188460.74089291666 184477.36239148257 195194.6982352518 217802.8748138838 203823.81057639842 182055.60442482907 192529.82895604632 131715.34656600383 188724.35361011786 0.8936687329152219 0.9986031865408012 0.9774963265874574 1.034284629945009 1.1540793259985869 1.0800079940794194 0.9646640772230931 1.0201641985951115 0.6979244811091637 1.0 17.525921079492235 1.2870190902903362 24.741348243811977 0.8489620666357858 1.0184570579269823 0.33299134117426454 0.09412647732525432 94.52317178613517 48260.28719339796 0.06088431998655978 0.022233292465949208 19.36507085152457 -1.2870190902903362 0.1694949912911965 YEWDVAEAR ddPTM_BT-474_Trastuzumab_2h_R1 7 YEWDVAEAR 9 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;;;;; 268.28 1.8821e-15 19717970000.0 10109390.0 11411570.0 10355910.0 10277490.0 9664360.0 11086350.0 10746700.0 10054320.0 11719620.0 10431650.0 False True 10054962.167498829 11791397.20901027 11813932.112816641 11578619.18022521 10895058.96085043 10319976.718960788 10226841.064619252 10804624.413202478 8831476.685862297 9765893.166015107 1.029599852934053 1.20740591859471 1.2097134293797747 1.1856180467464372 1.11562340234939 1.0567365978233172 1.0471997687019785 1.1063631589583747 0.9043183798687723 1.0 23.219320565023978 2.119301641560483 0.7441495716694158 0.9828486559094736 1.1636838786949506 0.5040022723581544 0.06576801903900605 0.5813089373825033 0.611174636139852 0.056735462859628966 0.03273900195531166 131.61386459602159 -2.119301641560483 0.18083522278547703 YEY(ph)LMT(ph)LHGVVNES(ph)T(ph)VCLMGHERR ddPTM_BT-474_Trastuzumab_2h_R1 1 YEYLMTLHGVVNESTVCLMGHERR 24 1 Q5TF85;Q96IP4;Q96IP4-2 Q5TF85 FAM46A Protein FAM46A 4 Y(0.242)EY(0.758)LMT(1)LHGVVNES(1)T(1)VCLMGHERR 52.249 0.040244 5274000000.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 True False 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 YEYDPDIS(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 4 YEYDPDISPPR 11 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR 162.93 2.5756e-05 2345220000.0 1055050.0 1238350.0 1106650.0 1149160.0 1039570.0 1184660.0 1147920.0 1126970.0 1350980.0 1225250.0 True False 1049369.728027075 1279567.731151616 1262456.700825764 1294643.5381739691 1171953.077485864 1102767.2425896807 1092390.7241197524 1211070.2240377064 1018049.0812045321 1147053.4960106993 0.9148393964855558 1.1155257671955001 1.1006083894224827 1.128668839488802 1.0217074282601135 0.961391292058269 0.9523450544538186 1.0558097144114453 0.8875340903847749 1.0 20.129501246318366 3.0085950520976814 10.078773887512233 0.9810933229813074 1.0716353312076812 0.2883328408086606 0.06819955668760341 0.24977939710935215 253.46666358960908 0.019613519410006892 0.02300690242040805 1019.987975839071 -3.0085950520976814 0.09054200822637382 YEYHWADGTNIK ddPTM_BT-474_Trastuzumab_2h_R1 3 YEYHWADGTNIK 12 0 Q9H8S9;Q7L9L4;Q7L9L4-2;D6RCK3;Q9H8S9-2 Q9H8S9 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B 0 ;; 237.67 4.1144e-16 1487290000.0 1904910.0 1932160.0 1807980.0 1731340.0 1588170.0 2094930.0 2069410.0 1837770.0 2605260.0 2202860.0 False True 1894654.1762153977 1996470.7775846145 2062527.8687561247 1950527.4664817112 1790414.0356789099 1950112.4200347753 1969304.7323861024 1974913.729406971 1963228.5816954505 2062271.588836669 0.9187219503344733 0.9680930428328439 1.0001242706929792 0.9458150308815568 0.868175678397861 0.9456137739524585 0.9549201681515628 0.9576399830640266 0.9519738294037746 1.0 20.975802908851982 0.5244407642655011 0.8815105900346777 0.9999921920749483 0.9441188680208031 0.21205833087447035 0.03215769905853415 2.749706319878971 3.2886611548761295 0.03403886978719995 0.011070288230836044 3.3453438581702675 -0.5244407642655011 -0.055873324054145135 YFAES(ph)DEEEDDVDFAMFN ddPTM_BT-474_Trastuzumab_2h_R1 14 YFAESDEEEDDVDFAMFN 18 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 Y(0.002)FAES(0.998)DEEEDDVDFAMFN;Y(0.414)FAES(0.586)DEEEDDVDFAMFN;Y(0.15)FAES(0.85)DEEEDDVDFAMFN;Y(0.001)FAES(0.999)DEEEDDVDFAMFN;Y(0.082)FAES(0.918)DEEEDDVDFAMFN;Y(0.301)FAES(0.699)DEEEDDVDFAMFN;Y(0.006)FAES(0.994)DEEEDDVDFAMFN;Y(0.005)FAES(0.995)DEEEDDVDFAMFN;YFAES(1)DEEEDDVDFAMFN;Y(0.004)FAES(0.996)DEEEDDVDFAMFN;Y(0.063)FAES(0.937)DEEEDDVDFAMFN;Y(0.043)FAES(0.957)DEEEDDVDFAMFN;YFAES(1)DEEEDDVDFAMFN;Y(0.045)FAES(0.955)DEEEDDVDFAMFN 204.23 1.1492e-15 363566000.0 338348.7 550434.9 487572.7 513517.5 498774.0 547661.7 533440.7 517988.8 585714.0 535604.1 True False 336527.06819327484 568755.7929015758 556218.6981021197 578528.7628478647 562289.9124348859 509803.1357359712 507636.1353996341 556643.7545498299 441372.632865498 501421.3877842592 0.6711462183142225 1.1342870622548868 1.1092839508900996 1.1537775949373374 1.1213919592054096 1.0167159761348639 1.0123942611280252 1.1101316539559547 0.8802429326277608 1.0 18.93566400908534 4.744428833635105 24.986653115994766 1.0679343015020113 0.6711460456053945 0.680084430265766 0.07979413157959155 361.07024264951133 1537379.9489936149 0.0187048830475584 0.16852122285300308 55517.363524323635 -4.744428833635105 -0.3967882558966168 YFDACADAVSKDELQR ddPTM_BT-474_Trastuzumab_2h_R1 2 YFDACADAVSKDELQR 16 1 Q9Y5P4-3;Q9Y5P4;Q9Y5P4-2;A0A2R8Y7C5;A0A2R8YE18;A0A2R8Y7Q9;A0A2R8Y5S9;A0A2R8YEA4;A0A2R8YE59;A0A2U3TZL3;A0A2R8YEK8;A0A2R8Y5H3;A0A2R8YFI2;A0A2R8YCI0;A0A2R8YDX6 Q9Y5P4-3 COL4A3BP Collagen type IV alpha-3-binding protein 0 ; 117.53 0.00031271 614530000.0 717220.0 702900.0 681940.0 654260.0 523380.0 674910.0 653970.0 621980.0 885150.0 696980.0 False True 713358.5672106339 726295.6015879775 777951.2244712616 737089.2489172106 590029.3406836983 628255.0602672497 622334.972691994 668395.3059504447 667016.64290233 652498.1396854011 1.0932729517889144 1.1130998809255723 1.192265812200395 1.1296419163318914 0.9042621040547 0.9628457493689713 0.9537727923516378 1.0243635426649773 1.0222506430806515 1.0 19.315614262907882 3.259236899028809 24.318989040051992 0.9798590322414789 1.135014934847277 0.7765187764467499 0.04049369857085425 84.71487869726151 99638.87285632725 0.011990412724687673 0.0162149562675449 1816.5062607208506 -3.259236899028809 0.15515590260579804 YFDDEFTAQSIT(ph)ITPPDRYDSLGLLELDQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YFDDEFTAQSITITPPDRYDSLGLLELDQR 30 1 P31751;P31751-2 P31751 AKT2 RAC-beta serine/threonine-protein kinase 1 YFDDEFT(0.001)AQS(0.001)IT(0.499)IT(0.499)PPDRYDSLGLLELDQR 102.42 0.00062307 2739100000.0 55882.0 61561.0 57243.0 60605.0 61731.0 66451.0 58814.0 57342.0 68332.0 67268.0 True False 55581.137521073906 63610.02067058961 65302.31683492453 68277.58678602935 69592.07694169707 61857.398778828305 55968.942128701594 61621.151216776096 51492.49420188899 62974.89864896774 0.8825919328730031 1.0100853202664468 1.036957871086545 1.0842032024000492 1.105076442117272 0.9822548365441831 0.8887500151557451 0.9785033805336051 0.8176669642442217 1.0 15.942489274655067 2.465502307841962 8.320133015340616 0.9258150441587202 1.0287813089681266 0.30815007889472523 0.07213300302314422 0.1882180441230489 90.29926024904316 0.02492474513124745 0.021273471136707568 292.08032813218443 -2.465502307841962 0.1029662648094064 YFDDEFTAQSITIT(ph)PPDR ddPTM_BT-474_Trastuzumab_2h_R1 6 YFDDEFTAQSITITPPDR 18 0 P31751;P31751-2;M0R0P9;M0R283 P31751 AKT2 RAC-beta serine/threonine-protein kinase 1 YFDDEFTAQSITIT(1)PPDR;YFDDEFTAQSITIT(1)PPDR;YFDDEFTAQSITIT(1)PPDR;YFDDEFTAQSIT(0.013)IT(0.987)PPDR;YFDDEFTAQSITIT(1)PPDR;YFDDEFTAQSITIT(1)PPDR 226.44 3.9252999999999994e-18 982068000.0 336793.0 350086.0 302314.0 306020.0 301842.0 345154.0 321013.0 293601.0 311532.0 310306.0 True False 334979.74390921963 361738.4008785445 344877.183439606 344762.1006230626 340279.7895422992 321294.316385122 305484.3748012529 315510.99749566894 234759.11291492864 290502.00541366776 1.1531064766049262 1.245218257145722 1.1871766012372593 1.1867804496982035 1.1713509139386113 1.1059968963987246 1.051574065267641 1.0860888793052874 0.8081152919431224 1.0 18.148188597413835 1.9566954769217426 0.9094268580697464 0.932177203053324 1.1964972689965727 0.7112523197782863 0.06401023454266885 0.30273199958565644 0.46179021060100367 0.05166461808289507 0.024418434904415694 90.5097732591394 -1.9566954769217426 0.26432006594324875 YFDDEFTAQSITIT(ph)PPDRYDSLGLLELDQR ddPTM_BT-474_Trastuzumab_2h_R1 9 YFDDEFTAQSITITPPDRYDSLGLLELDQR 30 1 P31751;P31751-2 P31751 AKT2 RAC-beta serine/threonine-protein kinase 1 YFDDEFT(0.073)AQS(0.066)IT(0.059)IT(0.792)PPDRY(0.008)DS(0.002)LGLLELDQR;YFDDEFT(0.006)AQS(0.005)IT(0.021)IT(0.968)PPDRYDSLGLLELDQR;YFDDEFT(0.001)AQS(0.004)IT(0.117)IT(0.878)PPDRYDS(0.001)LGLLELDQR;YFDDEFTAQS(0.001)IT(0.037)IT(0.961)PPDRYDSLGLLELDQR;YFDDEFTAQSIT(0.003)IT(0.996)PPDRYDSLGLLELDQR;YFDDEFT(0.014)AQS(0.012)IT(0.012)IT(0.962)PPDRYDSLGLLELDQR;YFDDEFT(0.002)AQS(0.03)IT(0.206)IT(0.758)PPDRY(0.003)DS(0.001)LGLLELDQR;YFDDEFTAQSIT(0.002)IT(0.786)PPDRY(0.098)DS(0.114)LGLLELDQR;YFDDEFTAQS(0.001)IT(0.041)IT(0.958)PPDRYDSLGLLELDQR 211.25 7.654800000000001e-26 4090775000.0 321694.0 365576.0 348372.0 363451.0 369885.0 385568.0 342418.0 322047.0 394139.0 388544.0 True False 319962.03524756356 377743.97616464103 397419.7494962936 409463.8593345295 416987.6622698411 358914.5916894442 325853.9331762122 346079.7824615302 297008.72464201745 363746.7892707462 0.8796284797153426 1.0384805785418945 1.0925725290745694 1.125683776220922 1.146367953118801 0.9867154907649089 0.895826280225035 0.9514304804046917 0.8165260378998044 1.0 18.47257498809728 2.473002474072978 5.325207738103525 0.9174109950323873 1.0622390555288193 0.4035156017131125 0.08039750400658163 0.17290739478241146 15.709497340320466 0.028325723472906763 0.024629713946706693 297.1682960665002 -2.473002474072978 0.14482806049643193 YFDEEFTAQMITIT(ph)PPDQDDSMECVDSER ddPTM_BT-474_Trastuzumab_2h_R1 1 YFDEEFTAQMITITPPDQDDSMECVDSER 29 0 P31749;P31749-2;G3V2I6 P31749 AKT1 RAC-alpha serine/threonine-protein kinase 1 YFDEEFTAQMITIT(0.937)PPDQDDS(0.031)MECVDS(0.031)ER 74.905 0.021698 17518000.0 11455.0 8640.6 8245.6 9241.6 10616.0 10908.0 10087.0 8065.0 11303.0 10083.0 True False 11393.327552770139 8928.197147647003 9406.508807959988 10411.585612437404 11967.88467403824 10153.955634670054 9599.053273917998 8666.851253240186 8517.527102440316 9439.494307509394 1.2069849487282822 0.945834263657997 0.9965055861601436 1.1029812904442013 1.2678523111685587 1.0756885171901935 1.0169033383792254 0.9181478340789349 0.9023287503509985 1.0 13.204493858275681 2.0186641476112417 2.8472397422015745 0.9338354809037223 1.09534330828769 0.388551546363759 0.08971146402846154 0.2964887289856466 4.658721436976965 0.0464399552130894 0.02737389787873486 104.3912619398145 -2.0186641476112417 0.16150782738396774 YFDEISQDTGK ddPTM_BT-474_Trastuzumab_2h_R1 1 YFDEISQDTGK 11 0 B7Z7P8;P62495-2;P62495 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 199.08 1.1978e-07 268250000.0 209100.0 191980.0 179520.0 163930.0 159260.0 217450.0 196060.0 192900.0 258420.0 208410.0 False True 207974.22883319377 198369.9382456393 204794.85558418764 184683.52119187836 179540.81699202437 202418.19332224072 186575.82877806693 207295.17752635223 194735.85365059075 195109.0953712223 1.0659381534084496 1.0167129208826107 1.049642791867477 0.9465654117276909 0.9202073160680844 1.0374615952019657 0.9562641271186275 1.0624577861526354 0.9980870101420879 1.0 17.573921507848144 3.775414825243754 24.605570474516302 0.9927438049066466 1.0413594698237212 0.27114737620840246 0.041165343858876054 771.1745732066438 514869.0652727866 0.011161947454788775 0.020121729709556436 5962.313742031652 -3.775414825243754 0.048615664917074586 YFDGSGGNNHAVEHYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YFDGSGGNNHAVEHYR 16 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 ; 191.96 3.5368e-10 3472000000.0 1101910.0 1326320.0 1337890.0 1386800.0 1146460.0 1297400.0 1250440.0 648600.0 1464210.0 1092360.0 False True 1095977.4389937099 1370465.7594226284 1526253.2828516543 1562368.737808191 1292454.885399199 1207713.7917510937 1189951.4400553198 697001.8255240645 1103375.0649087972 1022644.6495835521 1.0717089650251637 1.3401192290799333 1.492457114475869 1.52777285682219 1.2638357673171428 1.1809711146906274 1.1636020787278352 0.6815679579489337 1.0789427836522887 1.0 19.96387349119756 2.2204404294283093 1.8231282293286688 0.8944095718280628 1.3527013414807452 0.538263590030858 0.1599793477987458 0.2418615333032401 1.6032075017659155 0.08459921059673862 0.052737822388400114 166.12707917528644 -2.2204404294283093 0.45829176965268237 YFDLGLPNR ddPTM_BT-474_Trastuzumab_2h_R1 3 YFDLGLPNR 9 0 P48735;P48735-2 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial 0 ;; 164.72 0.00014434 822468000.0 476886.0 553062.0 627720.0 522557.0 639211.0 903589.0 535877.0 425453.0 608003.0 583194.0 False True 474318.4987630159 571470.3343369608 716097.5197599496 588712.6626210234 720610.731949572 841126.0192497142 509954.5822610645 457202.4632665592 458168.8074727964 545974.0596224965 0.8687564736884652 1.0466986924838393 1.3115962327131105 1.0782795487171637 1.3198625818373582 1.540597038312214 0.9340271268815648 0.8374069339167565 0.8391768791901737 1.0 19.05847288173026 2.0265656662311957 24.99623975176722 0.8770256290675679 1.1970181349979105 0.3986228715113661 0.1757386500276487 211.44290702709472 198950.5217358097 0.06865942394349786 0.05070703568253927 106.30793109326062 -2.0265656662311957 0.3199925059303427 YFDNKDDDS(ph)DTETSNDLPK ddPTM_BT-474_Trastuzumab_2h_R1 5 YFDNKDDDSDTETSNDLPK 19 1 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 YFDNKDDDS(0.96)DT(0.039)ETSNDLPK;YFDNKDDDS(0.935)DT(0.063)ET(0.002)SNDLPK;YFDNKDDDS(0.999)DT(0.001)ETSNDLPK;YFDNKDDDS(0.993)DT(0.007)ETSNDLPK;YFDNKDDDS(0.999)DT(0.001)ETSNDLPK 211.71 7.0353e-17 1145050000.0 1342130.0 833875.0 686867.0 689632.0 701656.0 1180410.0 1085990.0 1060780.0 2045910.0 1140510.0 True False 1334904.121204662 861630.0252869171 783571.9032450094 776939.3404904384 791007.7325590604 1098811.0350862567 1033456.5148153277 1139940.7901316972 1541722.8942894503 1067721.6753602645 1.25023604185449 0.8069799884845373 0.7338728072375426 0.7276609236468745 0.7408370091317694 1.0291174755026886 0.9679081530930097 1.0676385208224466 1.4439370576318507 1.0 20.026104195836847 1.8815167588774406 1.4482890211919648 1.2070374189858557 0.8502408199153129 0.3413129408065121 0.18331847195842677 0.43251164193242203 1.6954993338830964 0.13377520433563606 0.05793303950868331 76.12315134049477 -1.8815167588774406 -0.35679659907054284 YFDPANGK ddPTM_BT-474_Trastuzumab_2h_R1 4 YFDPANGK 8 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;; 111.04 0.0077015 916230000.0 1689550.0 1845560.0 1654890.0 1667560.0 1691480.0 1939920.0 1878350.0 1722280.0 2320620.0 1980900.0 False True 1680453.65052665 1906988.3489354225 1887884.1274382581 1878672.9250212228 1906879.951812568 1805817.8964804858 1787487.034506181 1850805.2791606325 1748734.2957148596 1854477.2660661854 0.9061602863923571 1.0283158407116126 1.018014166031238 1.0130471585701142 1.0282573891334574 0.9737611398769431 0.963876488115647 0.9980199342570847 0.9429796351315574 1.0 20.822581151355116 YFDRVDENNPEYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YFDRVDENNPEYLR 14 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 0 90.725 0.005142100000000001 221940000.0 112740.0 136200.0 120540.0 124460.0 118160.0 140180.0 118700.0 108560.0 126520.0 119810.0 False True 112133.02036659156 140733.33466536133 137510.98424753762 140216.6232388287 133206.9756108101 130489.68654822577 112958.02752196562 116661.29845651021 95340.84128114204 112163.62322549829 0.9997271587879681 1.2547145912220161 1.2259855761888145 1.25010782646466 1.1876129869931662 1.1633868699648193 1.0070825484557522 1.04009923272512 0.8500157050870669 1.0 16.77524533307978 2.0861530889712236 1.4597247446901511 0.9502445918917344 1.1957587791882869 0.6065589709028592 0.08148407655800842 0.2683091845402367 1.080190489099035 0.05100686394261976 0.02615971342354044 121.94193689680132 -2.0861530889712236 0.2455141872965525 YFDS(ph)GDYNMAK ddPTM_BT-474_Trastuzumab_2h_R1 15 YFDSGDYNMAK 11 0 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;O43768-6;O43768-5;O43768-7;P56211;H3BMD8;P56211-2;H3BQ52;H3BTD3 A6NMQ3;P56211 ENSA;ARPP19 Alpha-endosulfine;cAMP-regulated phosphoprotein 19 1 YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK 273.27 4.569600000000002e-27 12882080000.0 22519760.0 15654590.0 14395010.0 12806840.0 14675730.0 21653140.0 15799190.0 16000820.0 28699070.0 16853000.0 True False 22398516.114340555 16175643.564750506 16421702.284330077 14428184.630885111 16544597.225633318 20156309.397808924 15034922.820933107 17194882.438917644 21626568.746335626 15777427.1114208 1.4196558130905228 1.0252396319448973 1.040835249521952 0.9144827308656039 1.048624538639585 1.2775409612393889 0.952938822962445 1.0898407146796951 1.3707284840302516 1.0 23.91135862265326 1.4280213856755786 24.99999723051541 1.200338050048097 1.0832897928329477 0.03891168851298732 0.16489540294792637 200.01376763662842 101847.1575785306 0.09432454708357596 0.03895054012064659 26.793002565789685 -1.4280213856755786 -0.11704825721514922 YFEITDESPYVHYLNTFSSK ddPTM_BT-474_Trastuzumab_2h_R1 2 YFEITDESPYVHYLNTFSSK 20 0 Q9ULV4;Q9ULV4-2;Q9ULV4-3;B4E3S0 Q9ULV4 CORO1C Coronin-1C;Coronin 0 ; 307.22 5.6577e-56 668680000.0 775390.0 955940.0 878480.0 868640.0 817680.0 1032570.0 1102710.0 1004480.0 1279040.0 1125290.0 False True 771215.3863939283 987757.8850220662 1002162.3481149585 978609.7349363347 921806.7012309332 961190.8663083293 1049367.7045387237 1079439.3982460885 963837.7302579189 1053473.02879076 0.73206941736247 0.9376204781966505 0.9512937880007245 0.9289366772490055 0.8750168974796048 0.9124019695232655 0.9961030570884679 1.024648347651704 0.9149144818299431 1.0 20.006721947809798 4.740687202240088 4.30584810967694 0.9524093821206492 0.7151702849738629 0.691515240842617 0.043522848177581966 0.13369541531054924 5.846865607159976 0.011895941458535203 0.09760924890706486 55041.112359647756 -4.740687202240088 -0.23723909714678626 YFEITEEPPYIHFLNTFTSK ddPTM_BT-474_Trastuzumab_2h_R1 4 YFEITEEPPYIHFLNTFTSK 20 0 Q9BR76 Q9BR76 CORO1B Coronin-1B 0 ;;; 254.82 3.8607e-36 1293030000.0 1815000.0 2129960.0 1853590.0 1932880.0 1883730.0 2152420.0 2119860.0 2005840.0 2517040.0 2240670.0 False True 1805228.2416654585 2200854.4310119906 2114559.360306897 2177582.409817351 2123611.849757541 2003628.271651677 2017314.2731483907 2155525.9662491367 1896749.218608011 2097668.522265898 0.8605879444267267 1.0491907599560255 1.0080521959793503 1.0380965279800882 1.0123676964288042 0.9551691558432508 0.9616935429670704 1.0275817858584926 0.9042178010847709 1.0 21.00035528772272 1.2504771123059526 24.99507185342654 0.9521088669373233 0.993281499228034 0.06097899866431433 0.056158926786405605 496.4232157908743 1041271.0972405645 0.03608521255785325 0.01294688793309191 17.80234086508565 -1.2504771123059526 0.041172632290710665 YFFFDDGNGLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YFFFDDGNGLK 11 0 P61009 P61009 SPCS3 Signal peptidase complex subunit 3 0 123.63 0.0021776 0.0 79828.0 97276.0 97657.0 74404.0 112320.0 152310.0 90464.0 104200.0 120940.0 101220.0 False True 79398.21491772453 100513.7728554162 111406.25675013936 83823.5387711861 126623.28622720187 141781.1681991744 86087.91071396029 111975.93311687895 91135.9575129727 94760.05294119814 0.8378869835266327 1.06071883389289 1.1756668901321823 0.8845872935845812 1.336251746353244 1.496212420724949 0.9084831428638055 1.1816786677648212 0.9617550295114935 1.0 16.531991384142607 4.721161176647224 2.650969420455861 1.1293890176636632 0.7850420682536502 0.17036888744171774 0.18334346202943014 0.7679559498039401 7.3152271414562 0.04518309105576105 0.5746352473657625 52621.251969710494 -4.721161176647224 -0.344346949410013 YFGTDAVPDGS(ph)DEEEVAYTG ddPTM_BT-474_Trastuzumab_2h_R1 2 YFGTDAVPDGSDEEEVAYTG 20 0 Q9NWZ5;Q9NWZ5-4 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 YFGTDAVPDGS(1)DEEEVAYTG;YFGTDAVPDGS(0.999)DEEEVAYTG 112.24 0.00016409 69446000.0 222630.0 264780.0 253200.0 255870.0 260600.0 259600.0 276030.0 257360.0 302530.0 276530.0 True False 221431.38481651852 273593.0422371097 288848.3591461472 288263.1157650576 293785.8653027848 241654.46303266808 262677.37436300045 276565.51004760014 227975.5351943084 258881.61865075605 0.8553383819622986 1.0568268371583387 1.115754608811442 1.1134939485755404 1.134827056605808 0.9334554700798273 1.0146621290921587 1.0683087949195054 0.880616925923422 1.0 17.9819330077597 2.7319358319369687 24.83141840303277 0.9935497347622095 1.0619332161982593 0.14753014961517052 0.0871881105732454 1093.1751110195987 4097492.5928605953 0.02873512825604168 0.02771909917384524 539.4309144008101 -2.7319358319369687 0.06838348143604978 YFHVVIAGPQDSPFEGGTFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YFHVVIAGPQDSPFEGGTFK 20 0 P61088;F8VSD4;F8VV71;F8VZ29 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N 0 ; 298.34 1.0311e-54 3296700000.0 2012470.0 2131390.0 2074530.0 1932620.0 1941710.0 2386600.0 2339900.0 2120720.0 3117400.0 2475000.0 False True 2001635.0851264347 2202332.0276975376 2366605.7918619937 2177289.4938440095 2188975.2590831546 2221619.959452103 2226710.097713962 2278978.8951979596 2349158.5410198546 2317043.3810458933 0.8638746695467194 0.9504923583707026 1.021390368096487 0.9396843890170066 0.9447277841190311 0.9588167306773872 0.9610135554341 0.983571958056844 1.0138604051338327 1.0 21.143853624762944 4.69583632044984 3.701667484201541 0.9742925780976615 0.8564803313624308 0.6189405667920027 0.026668584533176554 0.15447654321852808 3.8586658598704537 0.006504154194580777 0.04600250405345117 49640.519797520756 -4.69583632044984 -0.11781224673523061 YFLHDDRDDGVDYWAK ddPTM_BT-474_Trastuzumab_2h_R1 3 YFLHDDRDDGVDYWAK 16 1 Q9NYF8;Q9NYF8-2;H0YF14;Q9NYF8-4 Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 ;; 165.8 6.2924e-09 1538910000.0 2287090.0 2259550.0 2194800.0 1986910.0 2098810.0 2509060.0 2364960.0 2186080.0 2975850.0 2451010.0 False True 2274776.561559589 2334757.7558231805 2503808.762456411 2238452.6022775266 2366081.012878503 2335614.5878919372 2250557.8497754643 2349216.3902893146 2242491.6418470307 2294584.4433847675 0.991367551592061 1.0175078814616005 1.0911817909664785 0.9755372519546763 1.031158831264571 1.0178812963826451 0.9808128248510396 1.0238090810133615 0.9772975007793158 1.0 21.12980146991212 2.5826076705446885 1.1116232218205384 0.9985513354129978 1.0250020057969211 0.11533397126414979 0.031051887987914667 1.1667841464940223 2.9538490870826366 0.017068690293715005 0.013506172770713235 382.47906634085024 -2.5826076705446885 0.026450670383923347 YFLHQSHEER ddPTM_BT-474_Trastuzumab_2h_R1 1 YFLHQSHEER 10 0 G3V192;P02794;E9PRK8;E9PKY7 G3V192;E9PKY7 FTH1 Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed 0 167.6 3.0036000000000008e-06 161930000.0 33457.0 83986.0 97978.0 100410.0 107890.0 88051.0 98794.0 45819.0 75244.0 88725.0 False True 33276.87122942216 86781.42323939096 111772.4507599572 113121.89570473076 121629.15198586918 81964.24161975912 94014.95679027015 49238.24644416769 56701.12441794385 83062.4945387058 0.40062451066787635 1.04477265848249 1.3456428365256117 1.3618889768837579 1.4643089237970326 0.9867779925820203 1.1318580944671808 0.5927855492134715 0.6826320920511487 1.0 16.34190957908219 1.7507792568701745 24.696244972557214 0.7281124509468622 1.1311928523667634 0.22029692689837166 0.2943696915123814 4.344467618515055 8796.768584034684 0.140797989884713 0.07807802667758884 56.33512429634755 -1.7507792568701745 0.4030804014199012 YFLNHIDQTTTWQDPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YFLNHIDQTTTWQDPR 16 0 P46937-6;P46937-7;P46937-5;P46937-3;P46937;P46937-9;P46937-2;P46937-8;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 0 ; 196.64 4.5374e-11 3454200000.0 1464080.0 1678780.0 1699790.0 1639400.0 1631560.0 1824370.0 1830600.0 1586160.0 1935250.0 1909480.0 False True 1456197.5559545814 1734657.1774560583 1939105.6571604633 1846947.871908532 1839329.494986231 1698255.5960050416 1742046.8844288948 1704527.3135572802 1458333.5685214207 1787615.351611924 0.8146034070704878 0.9703749611972664 1.0847443525319571 1.033190876461822 1.02892912243547 0.9500117541918036 0.9745087962340785 0.9535201809607857 0.8157983020264488 1.0 20.76960490874195 1.4957861120212996 4.7743107565036835 0.90083628583284 0.98490568282904 0.1074435109785159 0.0788160651716816 0.3112906533926946 15.453952879008124 0.0490698174211315 0.02035257611827146 31.317429758419937 -1.4957861120212996 0.08406939699619997 YFLNLVLVDEEDRR ddPTM_BT-474_Trastuzumab_2h_R1 3 YFLNLVLVDEEDRR 14 1 O75436 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 ;; 257.04 3.9716e-24 1906635000.0 885597.0 1055360.0 1009891.0 1072708.0 1053070.0 1072782.0 1092971.0 974312.0 1128549.0 1097384.0 False True 880829.0441510768 1090487.0196214067 1152074.8746700683 1208512.72281277 1187172.2224650956 998623.1053971959 1040099.8171753163 1047020.1088960889 850433.2207318328 1027348.0136022901 0.8573813668676308 1.0614582450962515 1.121406630875195 1.176342102979539 1.1555696869480463 0.9720397491163941 1.0124123504442408 1.019148423935547 0.8277946805482946 1.0 19.97049354596503 1.8726774833346573 1.2846032755868342 0.9331678207379891 1.0733177802858944 0.21729064002856358 0.09730548593883989 0.676755332660411 2.073902111819291 0.07778502951973972 0.033059522143699845 74.58946348686878 -1.8726774833346573 0.14014995954790532 YFNEMSAQGLRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YFNEMSAQGLRPR 13 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 0 ; 208.28 4.3039e-08 539280000.0 809170.0 935110.0 931760.0 876350.0 817670.0 952890.0 986530.0 781560.0 1134830.0 1052820.0 False True 804813.5186272381 966234.5710640689 1062943.7089968962 987295.820145811 921795.4277902088 887018.9571617852 938807.7749894249 839883.9758812645 855166.3524429208 985628.1262354496 0.8165488557040042 0.9803236589387386 1.0784429550085477 1.0016920112829277 0.9352365291268158 0.8999529676062549 0.9524969407834856 0.85213069059743 0.8676359061598413 1.0 19.910683900316855 3.0206408321571128 4.384989256648929 0.9049542812871428 0.9775893504088988 0.10171025461836558 0.07227702169333591 0.3669508646479394 16.990879363922886 0.022260001591072134 0.02596167037429703 1048.674800643443 -3.0206408321571128 0.07263506912175599 YFPSSLS(ph)PVTPSESLPR ddPTM_BT-474_Trastuzumab_2h_R1 1 YFPSSLSPVTPSESLPR 17 0 Q9P0U4;Q9P0U4-2;K7EKZ6;K7EQ21 Q9P0U4 CXXC1 CXXC-type zinc finger protein 1 1 YFPSS(0.001)LS(0.997)PVT(0.002)PSESLPR 126.63 4.5063e-05 101850000.0 74536.0 80242.0 83049.0 87052.0 84177.0 76516.0 84403.0 91287.0 89834.0 86335.0 True False 74134.70645772805 82912.8064626867 94741.5773251516 98072.77427435739 94896.44199383163 71226.62901928987 80320.10443922866 98099.29948599356 67695.6144139276 80825.02638488772 0.917224649017738 1.0258308616919838 1.1721812112252639 1.2133961306407266 1.1740972597019148 0.881244735759313 0.9937529009485919 1.2137243113147402 0.8375575912782505 1.0 16.30251445286079 2.77334505548899 24.844484571947977 1.0168764691489007 1.106644347579926 0.15509857088209478 0.1236007300815767 1421.099877449224 1015005.6954372945 0.04038259611775202 0.042829936540283116 593.3966025816778 -2.77334505548899 0.08976787843102518 YFPSSLS(ph)PVTPSESLPRPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YFPSSLSPVTPSESLPRPR 19 1 Q9P0U4;Q9P0U4-2;K7EKZ6;K7EQ21 Q9P0U4 CXXC1 CXXC-type zinc finger protein 1 1 YFPSSLS(0.999)PVTPSESLPRPR;YFPSSLS(1)PVTPSESLPRPR 297.68 5.586e-50 1174770000.0 279780.0 347900.0 295580.0 309690.0 313080.0 328020.0 290760.0 293840.0 362520.0 296850.0 True False 278273.69556647993 359479.64119000913 337195.09477258305 348896.7222467685 352948.88222945464 305344.7494760242 276694.8279889359 315767.832889287 273181.8035191244 277904.77885392867 1.0013274932301368 1.2935352989340192 1.2133475939606577 1.2554542015636023 1.2700353109615663 1.098738750500287 0.9956461674751239 1.1362447029212828 0.9830050589475946 1.0 18.084231117789916 2.560391443162267 4.977561603460506 1.0483743687818237 1.2138057838614458 0.48434371097231055 0.08583926617137963 0.19592685587319356 8.379817802383155 0.02746860114828283 0.025525296745045143 363.4054558715865 -2.560391443162267 0.1654314150796221 YFPVFSDR ddPTM_BT-474_Trastuzumab_2h_R1 1 YFPVFSDR 8 0 Q08AF3 Q08AF3 SLFN5 Schlafen family member 5 0 96.285 0.021053 179680000.0 273630.0 344890.0 351930.0 349990.0 321400.0 352670.0 344960.0 285750.0 452490.0 359800.0 False True 272156.80648315075 356369.4551595924 401478.6849696032 394298.6981147166 362328.38491295115 328290.7529958822 328272.9669248294 307074.11600909894 340979.9025553584 336837.2559597225 0.8079771511845294 1.057987051177633 1.1919070051372531 1.1705911122903374 1.075677878566606 0.9746272040499514 0.9745744008913397 0.9116394061998222 1.0122986591368364 1.0 18.36169219127273 2.7136868705224373 5.271965358429057 0.963658113895317 1.0743137797707778 0.1452422950786857 0.10042906453386741 0.31324482260978226 26.342197836147403 0.03413751361917903 0.03314268620773388 517.2337681701821 -2.7136868705224373 0.11065566587546083 YFQFQEEGK ddPTM_BT-474_Trastuzumab_2h_R1 3 YFQFQEEGK 9 0 O15144 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;; 147.51 0.00021457 360280000.0 455090.0 389175.0 370911.0 346565.0 351444.0 468030.0 449910.0 435265.0 547210.0 424360.0 False True 452639.84600525285 402128.4546137442 423132.0447837938 390440.0934658897 396198.31022821146 435676.1877241133 428146.1344768957 467746.6845308851 412357.4277383313 397276.9814871254 1.1393558325752675 1.01221181531449 1.0650806981061054 0.9827906263392276 0.9972848382635305 1.0966560058255788 1.0777018413556656 1.1773817923705792 1.0379595268639914 1.0 18.59978567950032 2.710296035765827 23.20075466694507 1.0960614000811675 1.0361252571360389 0.05341950312349242 0.05997836069860363 498.9475642841939 409555.5790125153 0.019191895599640654 0.018099547841864263 513.2110938687325 -2.710296035765827 -0.05993614294512861 YFQFQEEGKEGENR ddPTM_BT-474_Trastuzumab_2h_R1 4 YFQFQEEGKEGENR 14 1 O15144 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 ;;; 253.15 2.9202e-24 2529010000.0 1153330.0 1086210.0 942450.0 1062910.0 1020400.0 1295840.0 1323290.0 1176080.0 1806260.0 1369960.0 False True 1147120.5994270102 1122363.8432221885 1075138.7680777505 1197474.2970173818 1150341.8916153559 1206261.6308792469 1259277.4072412942 1263845.061613232 1361131.4256439751 1282527.9799182354 0.8944214998725737 0.8751184073923612 0.8382965400460841 0.9336827856915245 0.8969331738779635 0.9405343585222595 0.9818712940060585 0.985432740183809 1.0612878993335888 1.0 20.290558869658614 2.371288352674034 0.8412143733464201 1.0257543843664538 0.874958494490376 0.8216588848125019 0.026924325978220896 0.2383301412908455 0.33106653742253533 0.01957785758852588 0.012870436850075379 235.11933930126122 -2.371288352674034 -0.15079588987607784 YFQHLLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 YFQHLLGK 8 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2;J3QL06;J3KTF1;Q9BST8;J3QQH7;J3QLE9 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ; 98.299 0.0076206999999999985 814030000.0 1707360.0 1993820.0 1437510.0 1512990.0 1465650.0 1757850.0 1242140.0 1562410.0 2561100.0 1729430.0 False True 1698167.7634655272 2060183.09341036 1639898.9129390926 1704534.3788696423 1652291.8399118448 1636333.9670338046 1182052.9427643996 1679004.967957221 1929951.2219817669 1619056.2967604867 1.0488627028370365 1.27245920820203 1.0128733115829938 1.0527950030398483 1.0205277254520784 1.0106714450312124 0.7300876103749623 1.0370269219894845 1.1920223069718694 1.0 20.62672172027973 4.11864713297902 8.338106098834078 0.9969588977036794 1.1599611866449435 0.21012734222960328 0.11822972782956351 0.3325420738429911 22.654510706816446 0.029876808643727118 0.0649647599729993 13141.566376906774 -4.11864713297902 0.16300228894126412 YFQINQDEEEEEDED ddPTM_BT-474_Trastuzumab_2h_R1 12 YFQINQDEEEEEDED 15 0 P35268;K7ERI7 P35268 RPL22 60S ribosomal protein L22 0 ;;;;;;;;;;; 307.03 6.4213e-45 5138685000.0 4075338.0 4754464.0 4306242.0 4673815.0 4577936.0 4796240.0 4800497.0 4480477.0 4957472.0 4878810.0 False True 4053396.833020622 4912713.460105824 4912523.443073547 5265519.499782953 5160909.014047475 4464687.217934535 4568278.620430609 4814832.945141208 3735769.452321419 4567440.168840615 0.8874548287842211 1.0755944858611803 1.0755528833387056 1.1528381993276415 1.1299346730922812 0.9775031643310693 1.0001835714446166 1.054164426277179 0.8179131667245672 1.0 22.12295439972433 1.2633454286752885 24.950099485468918 0.9089565867274776 1.0485195400447023 0.296867198370537 0.08300956565588662 224.96052300246058 226461.49587152668 0.05517606859170027 0.020130673978978393 18.337723863747218 -1.2633454286752885 0.13956295331722468 YFQS(ph)PS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 YFQSPSR 7 0 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 YFQS(1)PS(1)R 69.721 0.086215 1058400000.0 2370500.0 2705100.0 2186500.0 2351400.0 2270600.0 2469000.0 2251600.0 2073200.0 2672300.0 2249700.0 True False 2357737.491387312 2795137.6182325208 2494340.1946013076 2649086.998905526 2559747.4510994004 2298323.8414008394 2142681.5060527152 2227912.711496288 2013747.4719854237 2106122.219934929 1.1194685042827934 1.3271488196534384 1.1843283219709695 1.2578030723152298 1.2153840963600329 1.0912585317445862 1.0173585776607568 1.057826886971983 0.956139892037054 1.0 21.00615772884913 2.585402748986528 2.236553248116553 1.0160111487628343 1.2295156101314744 0.7697345460500258 0.05503606217496723 0.13793704537531856 1.3679013239532187 0.01941980955015183 0.01740957608585123 384.9486039729443 -2.585402748986528 0.2135044613686401 YFQS(ph)PS(ph)RS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 2 YFQSPSRSR 9 1 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 YFQS(1)PS(1)RS(1)R;Y(0.008)FQS(0.998)PS(0.994)RS(1)R 80.96 0.018456 11121000000.0 4475300.0 5529200.0 3977800.0 4478600.0 4421600.0 5196200.0 4371700.0 4197700.0 4836800.0 4275100.0 True False 4451205.482052571 5713236.07952802 4537839.664342588 5045590.300798791 4984664.551123542 4836998.924539107 4160224.169484212 4510953.689488693 3644835.449799463 4002259.4579027505 1.1121731434136146 1.4275026743323256 1.1338194617498611 1.2606854587690233 1.2454626201909427 1.2085670545391811 1.0394688833252799 1.127101762625981 0.9106944435105206 1.0 21.932383266426953 1.9579736664744114 0.9913235972995257 0.9754659789902631 1.2482344756892807 0.555174363878072 0.09334578872949327 0.37981423162169486 0.6861799870903371 0.07067600669072269 0.032562605437542275 90.77654859826083 -1.9579736664744114 0.2727684966990176 YFQS(ph)PS(ph)RS(ph)RS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 YFQSPSRSRSR 11 2 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 4 Y(0.001)FQS(0.999)PS(1)RS(1)RS(1)R 94.017 0.0016369 0.0 326360.0 386990.0 292960.0 377160.0 413160.0 507470.0 420940.0 362460.0 421460.0 392990.0 True False 324602.9140220044 399870.7282096045 334206.22154603153 424908.417328914 465773.47700882074 472389.7933558866 400577.5240530423 389508.60573458666 317596.8302746613 367909.04174433375 0.8822912111183625 1.0868738814184444 0.9083936071847811 1.1549279009679518 1.2660017128160026 1.283985278307344 1.0887949971379351 1.0587089784144603 0.8632482332287031 1.0 18.488989606902685 3.7328588847266784 24.94145837549602 1.1144982030463595 0.9719549966841323 0.20712046929770755 0.12594015417878976 731.5617970551064 3200119.9800625923 0.03526198696537932 0.05631813993060658 5405.786442273031 -3.7328588847266784 -0.14254320636222717 YFQS(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 5 YFQSPSR 7 0 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 YFQS(0.998)PS(0.002)R;YFQS(1)PSR;YFQS(0.989)PS(0.011)R;YFQS(1)PSR;YFQS(0.995)PS(0.005)R 144.79 0.0024442 9085290000.0 3836070.0 5394150.0 5972500.0 4271370.0 3613500.0 3574380.0 5212130.0 3330740.0 5281810.0 3973870.0 True False 3815417.0253474466 5573691.021917463 6813376.086099381 4812125.004046563 4073657.8061074954 3327291.523785472 4959999.359629845 3579296.7319550146 3980178.6981279585 3720254.214398722 1.0255796527507206 1.4982016552377722 1.8314275566785636 1.293493596599369 1.0949944738563764 0.8943720864309909 1.333242051156844 0.9621107928866389 1.0698673985028322 1.0 21.82696977703422 3.3743688950088595 3.905547418711489 1.062218452084274 1.4702263316985442 0.41022472688881906 0.21206233971121793 0.21027257617959247 6.02022283309407 0.06007833146293344 0.08338293124088773 2367.930192167079 -3.3743688950088595 0.4080078796142703 YFQSPS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 YFQSPSR 7 0 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 YFQS(0.002)PS(0.998)R 107.56 0.007814 575670000.0 427060.0 594750.0 666620.0 472180.0 428670.0 408270.0 549100.0 352300.0 577840.0 431350.0 True False 424760.7564108267 614545.8942160332 760474.3016350882 531957.9395862938 483258.58357384824 380047.2558642041 522537.93523429916 378590.4149431513 435439.07465930394 403820.8737026858 1.0518543841385424 1.5218279545115694 1.883197108317361 1.317311645405307 1.1967152147009832 0.941128308647103 1.2939844600975707 0.937520667200303 1.0782975893908275 1.0 18.623355960660984 3.2630497988797686 2.8313211852188034 1.0616161425127346 1.4987147878289786 0.43424190074425717 0.21283653393884355 0.23446676454938112 3.8501285883728658 0.06351829827636693 0.0855080971704917 1832.5245388730407 -3.2630497988797686 0.437098645316244 YFSDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YFSDLR 6 0 E7ESC6;Q9UIA9 E7ESC6 XPO7 Exportin-7 0 103.71 0.080148 208180000.0 583180.0 590620.0 377780.0 441550.0 396430.0 557320.0 271030.0 377510.0 636860.0 533060.0 False True 580040.2236773887 610278.4296626705 430968.14027737477 497450.1847268582 446913.0106752999 518793.78019016393 257919.2434648554 405681.71315693815 479914.3864867855 499039.65442437393 1.1623128914403533 1.22290568345036 0.8635949797906993 0.9968149430943537 0.8955460887988943 1.039584280709267 0.5168311599653476 0.8129248037911513 0.9616758552791785 1.0 18.92879493322253 4.304805704959704 0.7300093450624487 0.8288814277626245 1.3241456715345223 0.3461937300908132 0.1510960287360308 1.7296024444976272 1.0382489583035492 0.06318713070211107 0.6394607022889093 20174.635871525912 -4.304805704959704 0.4952642437718978 YFVAFDGDLVQEFDMTSATHVLGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 YFVAFDGDLVQEFDMTSATHVLGSR 25 0 P49916-3;P49916 P49916-3 LIG3 DNA ligase 3 0 ; 225.39 7.4258e-34 49566000.0 28504.0 34014.0 33064.0 36702.0 39849.0 42023.0 40969.0 38391.0 40349.0 39045.0 False True 28350.53763109211 35146.13542810279 37719.123802560054 41348.469436859144 44923.53394647228 39118.04892150159 38987.17295322161 41255.93136554795 30405.52959889978 36553.114671893694 0.7755984103015799 0.9615086359556453 1.031899036269074 1.1311886772990287 1.2289933251848095 1.0701700599971067 1.066589627263679 1.1286570716577082 0.8318177499188353 1.0 15.157706722259153 4.64537242493555 1.7395464816349893 1.0793550594957084 0.7084664677353592 0.43822820545364893 0.09817574799428266 0.6458337173214828 2.265490689758726 0.025540591855644185 0.3735440121706259 44194.927412739824 -4.64537242493555 -0.3708885917603493 YGADVHTQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 YGADVHTQSK 10 0 F5H7I4;H9ZYI9;Q06547-4;Q06547-3;Q06547-2;Q06547 F5H7I4 GABPB1 GA-binding protein subunit beta-1 0 ; 80.763 0.023032 247584000.0 432780.0 431340.0 413920.0 396730.0 413770.0 525070.0 489250.0 488000.0 624930.0 479420.0 False True 430449.96056637797 445696.89114946336 472196.33814286365 446955.97732235637 466461.1568930677 488773.14678183047 465583.10838350136 524417.0380137896 470924.3751329754 448823.00514788757 0.9590639419753992 0.9930348623787808 1.0520769495477946 0.9958401690552471 1.03929868019882 1.089010904467295 1.0373423444061012 1.1684272686534722 1.0492429526374332 1.0 18.77578709994272 3.4382367201344284 0.7530852740404026 1.0874403438263103 0.9758280752369687 0.29331890089109536 0.04711591416406124 0.817298996913561 0.9465565405748301 0.024369295091677665 0.05765889012101175 2743.068924305576 -3.4382367201344284 -0.11161226858934159 YGAFGLPITVAHVDGQTHMLFGSDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGAFGLPITVAHVDGQTHMLFGSDR 25 0 Q9Y2Q3-3;Q9Y2Q3;Q9Y2Q3-2;Q9Y2Q3-4 Q9Y2Q3-3 GSTK1 Glutathione S-transferase kappa 1 0 ;; 248.79 2.0737e-39 1034640000.0 516111.0 674475.0 681074.0 678914.0 729059.0 756898.0 750915.0 324816.0 815753.0 653332.0 False True 513332.3157213228 696924.4926462519 776963.2991986686 764864.4427893789 821900.3421787536 704575.4228062425 714590.3726761306 349055.4193022276 614721.6036801725 611635.7924143344 0.8392777566123553 1.1394436056386663 1.2703038455806033 1.2505227003969126 1.3437741093182816 1.1519525697229782 1.1683266112589643 0.5706916168597447 1.0050451777088738 1.0 19.222313308911428 1.769306260601959 24.999991892858873 0.8167484822061738 1.1787232604255773 0.4005609546588156 0.16969254216956686 21.264584131703046 17299.88249325361 0.07752254394468837 0.04299973317267218 58.79037909025032 -1.769306260601959 0.3619747782194035 YGDAFIR ddPTM_BT-474_Trastuzumab_2h_R1 5 YGDAFIR 7 0 P62312 P62312 LSM6 U6 snRNA-associated Sm-like protein LSm6 0 ;;;; 151.17 0.0044183 1588850000.0 1990980.0 2307850.0 2191530.0 2080080.0 2081070.0 2127580.0 2265380.0 2048010.0 2541390.0 2241050.0 False True 1980260.784898672 2384665.3921252145 2500078.3748797593 2343417.914724593 2346081.929031722 1980505.4023846064 2155794.9148080056 2200842.905784061 1915098.487381298 2098024.2703405637 0.9438693407380003 1.1366243116616193 1.1916346298863034 1.1169641590200459 1.118233931893882 0.9439859349497034 1.0275357369712717 1.049007362258401 0.9128104543187329 1.0 21.000599936704294 2.7539753284005535 24.198239614822974 0.9979911379539173 1.109289023639901 0.39660857149182116 0.06977284346539123 576.3864650168769 904818.451266917 0.021592784469906402 0.022818579909442596 567.512364990948 -2.7539753284005535 0.11129788568598364 YGDFFIR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGDFFIR 7 0 B0QY89;Q9Y262-2;Q9Y262;B0QY90;H0Y7E6 B0QY89 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ;; 101.69 0.020643 249232000.0 373469.0 424132.0 457020.0 394919.0 316459.0 351464.0 377290.0 324338.0 496940.0 368134.0 False True 371458.28440030647 438248.977226792 521364.4435109487 444915.7049080425 356758.17785055254 327168.1209372643 359039.0413122357 348541.7485149923 374475.79565484315 344639.372944626 1.077817317349836 1.271616105502857 1.512782590846686 1.290960174128242 1.0351637272386567 0.949305699293479 1.0417818435676045 1.0113230694944226 1.0865728789351383 1.0 18.394728004517162 3.2357110022787445 5.836337829111778 1.0176169324428384 1.30469284201028 0.6169715470608943 0.10308875156747702 0.10376177398802432 12.377510409092114 0.03050063530217573 0.038879315083533046 1720.7231527330568 -3.2357110022787445 0.28707590956744156 YGDGGSSFQSTTGHCVHMR ddPTM_BT-474_Trastuzumab_2h_R1 7 YGDGGSSFQSTTGHCVHMR 19 0 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 0 ;;;;;; 188.41 9.392799999999999e-15 1972479000.0 405207.0 631543.0 636880.0 647135.0 668630.0 635951.0 653939.0 413542.0 711309.0 645721.0 False True 403025.4105347304 652563.5269791952 726547.1681398035 729062.2246477543 753776.0672194981 591989.2042376285 622305.4722804263 444402.6039637264 536016.4280022748 604510.5329504386 0.6666970856035901 1.0794907473228366 1.2018767722602612 1.2060372564385529 1.246919658356552 0.9792868311959808 1.0294369384155075 0.7351445173249962 0.8866949354647898 1.0 19.205407951550544 1.9149389438175521 5.623896248773626 0.8497299172048765 1.0793381397988613 0.1997020558510717 0.16634796277261144 0.30893243797677244 15.59973118195633 0.07594058290456743 0.04587163579391098 82.21270613992932 -1.9149389438175521 0.22960822259398483 YGDGGSTFQSTTGHCVHMR ddPTM_BT-474_Trastuzumab_2h_R1 7 YGDGGSTFQSTTGHCVHMR 19 0 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;D6RIT2;H0YBG7 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ;;;;;; 185.33 1.6075e-14 6812250000.0 1435943.0 1720835.7 1613337.9 1838434.2 1751398.0 1865237.0 1861553.5 1285310.0 1952512.0 1726113.2 False True 1428212.0424362666 1778112.676007351 1840481.8529355882 2071179.7812210964 1974428.153950755 1736297.5564856108 1771503.0453800445 1381226.3588719356 1471341.5799203704 1615951.1777761418 0.8838212825227553 1.1003504935429884 1.1389464472982678 1.2817093794080068 1.221836514063467 1.0744740189954802 1.0962602520071008 0.8547451048445458 0.9105111590965379 1.0 20.623952180381544 1.8303146941155461 5.3048190509156266 0.911195808494876 1.1255850866279764 0.41788823793678087 0.10341085396130358 0.20499010046074662 8.564131488864922 0.050444930275635125 0.029208154142471604 67.65730493976065 -1.8303146941155461 0.21438927813310038 YGDGPRPPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGDGPRPPK 9 1 Q08211;Q08211-2 Q08211 DHX9 ATP-dependent RNA helicase A 0 60.045 0.08965 835320000.0 914330.0 956410.0 834880.0 876940.0 836840.0 991640.0 991020.0 924260.0 1328200.0 1019400.0 False True 909407.3488716139 988243.5286879451 952423.8470929515 987960.5140853161 943406.6136607174 923090.260869472 943080.5765359587 993232.9744971829 1000882.9069681705 954341.0192477511 0.952916547156743 1.0355245229497914 0.9979911036871173 1.0352279679480456 0.9885424545665524 0.9672540970701311 0.9882008186961634 1.0407526811328804 1.0487686128770883 1.0 19.864145357926624 1.7313069489065231 8.633100292029145 1.033087778039427 0.9969896200912683 0.2522052731802902 0.02707288464263969 0.14255454177406793 35.242435951043674 0.012882925612764412 0.006893267746884681 53.86503531406761 -1.7313069489065231 -0.03609815794815863 YGDSEFTVQSTTGHCVHMR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGDSEFTVQSTTGHCVHMR 19 0 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ; 196.66 4.7685e-16 662580000.0 364700.0 477010.0 447100.0 570460.0 493280.0 535480.0 499510.0 303730.0 558710.0 473940.0 False True 362736.49572197907 492886.989491366 510047.7937371333 642680.177509419 556096.2841003755 498463.52798433404 475346.7929864956 326395.8749096889 421023.40683043696 443692.7434395515 0.8175398427975374 1.1108745788142842 1.1495518042129576 1.4484802535360317 1.253336441316259 1.1234430478177169 1.0713422746145422 0.7356349179376582 0.9489075786243888 1.0 18.75920143262226 1.9476169657142646 5.210619002551585 0.8707329131048893 1.1625308224600788 0.33407817055397493 0.1596290571568324 0.22116641157281347 13.106068067157931 0.07449331665811966 0.045478306800855524 88.63739128491834 -1.9476169657142646 0.29179790935518946 YGDSLYR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGDSLYR 7 0 Q9BZE4-2;Q9BZE4;Q9BZE4-3;Q5T3R7 Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 0 ;; 132.09 0.019389 166360000.0 647680.0 765700.0 728520.0 746500.0 782880.0 786330.0 716390.0 698790.0 894740.0 793580.0 False True 644192.9628440135 791185.8616245749 831089.2835906433 841006.8234596297 882575.1275066928 731972.8579217184 681735.478824439 750937.2581837206 674243.3159017471 742933.0449819808 0.867094238431187 1.0649490784782152 1.1186597354958152 1.1320089059708303 1.1879605214331244 0.9852474093940347 0.9176270774723365 1.0107738015636847 0.9075425039386965 1.0 19.502872671708015 2.5028308236430514 23.945590846644688 0.9622782815523706 1.0800421777810616 0.3031341254593546 0.0837719111038418 543.5941954004683 506296.855096586 0.027840352462604835 0.02614186453466583 318.2957381565554 -2.5028308236430514 0.11776389622869099 YGDTSYHDEEEDEYEAEDDEEEEDEGRKDS(ph)DTESSDLFTNLNLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGDTSYHDEEEDEYEAEDDEEEEDEGRKDSDTESSDLFTNLNLGR 45 2 Q9Y3S2 Q9Y3S2 ZNF330 Zinc finger protein 330 1 YGDTSYHDEEEDEYEAEDDEEEEDEGRKDS(0.727)DT(0.177)ES(0.044)S(0.044)DLFT(0.007)NLNLGR 75.86399999999998 0.00029732 146510000.0 17397.0 15114.0 13520.0 11419.0 14863.0 18490.0 20139.0 16908.0 22204.0 16714.0 True False 17303.3364849884 15617.06035339407 15423.49848205335 12864.644229183556 16755.714950097066 17211.82982077825 19164.79963154897 18169.76081708432 16732.12171835661 15647.298210424666 1.1058354133917148 0.9980675349428408 0.9856972286613536 0.822163932468084 1.0708375800580028 1.0999873325933833 1.2247992831619228 1.1612075498745924 1.0693297650075593 1.0 13.933625950769935 3.0086057614288793 24.934132851746277 1.1288507400436192 0.9757536460593116 0.345009946606639 0.08505250897136278 187.3719160382734 542882.2918917473 0.025057897619579553 0.029907876125627387 1020.0131281819814 -3.0086057614288793 -0.1530970939843076 YGEAGEGPGWGGAHPR ddPTM_BT-474_Trastuzumab_2h_R1 5 YGEAGEGPGWGGAHPR 16 0 P26640;A0A140T954;A2ABF4;A0A0G2JJT9 P26640 VARS Valine--tRNA ligase 0 ;;;; 248.68 1.9103e-20 3654240000.0 1371750.0 1598940.0 1460070.0 1472820.0 1470590.0 1633210.0 1577340.0 1484380.0 1920160.0 1671690.0 False True 1364364.6504157516 1652159.7513203595 1665635.1648440547 1659278.860988365 1657860.9196301734 1520310.0368628057 1501038.0381760509 1595151.9731289104 1446962.2968257817 1565001.312994188 0.8717977672526199 1.0556922461358313 1.0643027267864282 1.060241194183923 1.0593351621273241 0.9714432979957838 0.9591289321695448 1.0192655813668539 0.9245757717975508 1.0 20.577732436865077 2.720028767846397 24.209623392139513 0.9783387787011211 1.0285746375237577 0.13613439921818438 0.0583018598989304 1077.4585902166277 1407567.423411771 0.01875942326269117 0.01771373507638598 524.8422248647505 -2.720028767846397 0.05023585882263659 YGEPGEVFINK ddPTM_BT-474_Trastuzumab_2h_R1 2 YGEPGEVFINK 11 0 P23246;P23246-2 P23246 SFPQ Splicing factor, proline- and glutamine-rich 0 ; 137.46 0.00018129 450030000.0 443820.0 536850.0 521160.0 504140.0 476890.0 482920.0 468300.0 450380.0 569130.0 477580.0 False True 441430.5224330374 554718.7277173218 594534.7979960742 567964.0723093613 537619.1147515166 449536.87707140256 445646.53992027335 483989.6425833007 428875.53745128296 447100.4355231909 0.9873184800557874 1.2407027227969427 1.3297566961668414 1.2703277098013501 1.2024571484087283 1.0054494278122557 0.9967481677775236 1.082507651814167 0.959237574773146 1.0 18.770239425655863 2.7628086584365614 6.202531237478492 1.018278635889674 1.2193405377724702 0.5524206796867993 0.0882381133297798 0.14152125565582596 20.436368262287424 0.02820413212889644 0.02918462577461069 579.1734678260548 -2.7628086584365614 0.20106190188279616 YGEPSEVFINR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGEPSEVFINR 11 0 Q8WXF1;Q8WXF1-2;X6RDA4 Q8WXF1 PSPC1 Paraspeckle component 1 0 ;; 172.94 2.9704e-05 668930000.0 591730.0 671710.0 547410.0 636580.0 633630.0 676500.0 627830.0 587080.0 759340.0 662230.0 False True 588544.1914273833 694067.4612927306 624480.5698269844 717170.9627299829 714319.0246807516 629735.1473097078 597459.4643564925 630890.8907318352 572210.8316347013 619965.9144363729 0.9493170152143673 1.1195251950645146 1.0072821025890042 1.1567909558092102 1.152190802828503 1.0157576935212904 0.963697278260303 1.0176218983029002 0.9229714381231959 1.0 19.24182937312116 2.4977412581354614 13.892414105390008 0.9823850055687783 1.080347151709182 0.35902587751595494 0.06362280605631913 3.0121994922800446 2029.1066383392201 0.020524781502683612 0.01888623672041728 314.5873522377774 -2.4977412581354614 0.09796214614040377 YGEVEEMNVCDNLGDHLVGNVYVK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGEVEEMNVCDNLGDHLVGNVYVK 24 0 P0DN76;Q01081;Q01081-2;Q01081-4 P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit 0 297.05 5.2883e-62 495210000.0 315850.0 288620.0 265480.0 250370.0 257480.0 304280.0 311420.0 301310.0 414280.0 302930.0 False True 314149.49869423383 298226.54222552595 302857.27640647336 282066.8163289858 290268.5517964736 283245.83979807486 296355.4248600716 323795.2822211781 312186.2450675906 283596.74804857915 1.1077330782383341 1.0515866076660398 1.0679151946925531 0.9946052564773018 1.0235256708470846 0.9987626506547805 1.0449887980002752 1.1417453988778217 1.1008103838134073 1.0 18.113481463992073 1.9187171816279696 10.81557328040017 1.095908443621221 1.0380832787978043 0.10988982527510494 0.045711437191596184 0.9292347675760986 120.5609587120104 0.018883229820356597 0.012045104618492827 82.9310533524508 -1.9187171816279696 -0.05782516482341671 YGEYFPGTGDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 YGEYFPGTGDLR 12 0 Q92769;Q92769-3;Q13547;Q5TEE2 Q92769;Q13547 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase 1 0 ;;;; 156.48 0.00016487 3668530000.0 2221716.0 2751470.0 2464820.0 2490830.0 2427660.0 2576400.0 2708190.0 2418940.0 2972600.0 2529780.0 False True 2209754.527911853 2843051.015651264 2811845.2314004954 2806168.8226094437 2736808.1111318474 2398299.532193246 2577184.503409534 2599453.585928435 2240042.5607992625 2368327.2745463736 0.9330444114127371 1.2004468496423573 1.1872705523517955 1.1848737515160077 1.1555869581648306 1.0126554543238173 1.0881876551048735 1.0975905289214436 0.9458331983396667 1.0 21.175437027292855 2.7454189342912656 24.732939918232784 1.0449476836502933 1.1420143772421354 0.2664901145749218 0.08287327274872956 679.4050328843571 2450118.89998609 0.025384706898900433 0.02638599684424648 556.4407589464489 -2.7454189342912656 0.09706669359184206 YGGEGAESMMGFFHELLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGGEGAESMMGFFHELLK 18 0 Q96HY7 Q96HY7 DHTKD1 Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial 0 173.34 8.5616e-12 102410000.0 70151.0 63956.0 71894.0 62283.0 65008.0 130880.0 79220.0 60610.0 107880.0 95129.0 False True 69773.31481050882 66084.73679778152 82016.0502861496 70168.02141398008 73286.38346739633 121832.57365838064 75387.82595021144 65133.02597134384 81294.41951793867 89057.78577596552 0.7834611449472945 0.7420433398605352 0.920930714496651 0.7878931729842837 0.8229082143559705 1.3680170980767885 0.8465046070183876 0.7313568982637072 0.9128277646880147 1.0 16.442454122368385 4.2366330154037755 24.96308872351959 0.9082761115847998 0.7627522122977981 0.12472082344297486 0.16664617827043585 110.43353253444796 1430238.5839937457 0.0436902578588869 0.10261448122537796 17243.801520773024 -4.2366330154037755 -0.1455238992870017 YGGGGYGR ddPTM_BT-474_Trastuzumab_2h_R1 6 YGGGGYGR 8 0 Q01130;J3KP15 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 0 ;;;;; 140.01 0.001527 5704520000.0 3692050.0 4202780.0 4151840.0 4004270.0 3899640.0 3684710.0 4138950.0 3780550.0 4595140.0 4015220.0 False True 3672172.413025321 4342666.991665842 4736382.983559785 4511210.171432952 4396236.039022839 3429994.6705743573 3938733.1761755613 4062673.8382439185 3462729.3187213605 3758965.221997211 0.976910451721132 1.1552825671950482 1.2600230924837483 1.200120220595193 1.1695335762343215 0.9124837469903312 1.0478237875483285 1.0807958037146566 0.9211921670511081 1.0 21.841904136930626 2.762143205763407 24.316473284965586 1.0089228721465564 1.1611686693716166 0.47368044911838025 0.08312697228890961 539.4662843151224 556253.0952432158 0.026341568552400833 0.027922889293579087 578.286702226182 -2.762143205763407 0.15224579722506015 YGGPPPGWEGPHPQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGGPPPGWEGPHPQR 15 0 B7Z8Z7;A0AV96;A0AV96-2;D6R9D6;D6RBS9;D6REZ6;D6R9M7;D6RBP6;D6RFL5;D6RA49 B7Z8Z7 RBM47 RNA-binding protein 47 0 151.54 2.9871e-06 331450000.0 217700.0 246470.0 213810.0 214340.0 231590.0 217060.0 230640.0 183470.0 232510.0 220440.0 False True 216527.92738874367 254673.60495573902 243912.58953016484 241475.4220232246 261081.61375852645 202055.15310427966 219483.06206963884 197161.4630417825 175211.02597437822 206371.3304718212 1.0492151545163844 1.2340551585992379 1.1819112130183689 1.1701015905220258 1.2651060259272575 0.9790853828500617 1.063534656523465 0.9553723503696835 0.8490085593468725 1.0 17.654883036966392 2.396959789842873 1.532787852041358 0.9445115232050252 1.1810312789162494 0.6318307061037074 0.07744726252152062 0.24154548654839772 1.1474532226968719 0.037634073843403136 0.026523277652158696 249.43637698236842 -2.396959789842873 0.2365197557112242 YGGPYHIGGSPFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YGGPYHIGGSPFK 13 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ; 115.33 0.00067293 1430530000.0 1091470.0 1197410.0 1151390.0 1069740.0 825270.0 1185010.0 1245290.0 974070.0 1825060.0 1307180.0 False True 1085593.6467937182 1237265.0680003709 1313495.7039387147 1205168.974317087 930363.2427414792 1103093.0479134899 1185050.5652302296 1046760.0496272368 1375298.4175510677 1223754.653266898 0.8871007304410657 1.0110401334919594 1.073332551122275 0.9848125775046533 0.7602530787178705 0.9014004931206647 0.9683726734494165 0.8553675745647531 1.1238350872698324 1.0 20.22288291494053 6.101507077407354 0.001661388421651831 1.8832059955555245 7.991438204456923e-05 0.002733269716472475 0.10186693237212836 8149576.84844098 1491.899240095783 831017.1033122417 860213.003300474 1263301.6908242265 -6.101507077407354 -1.88312608117348 YGGSHYSSSGYSNSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGGSHYSSSGYSNSR 15 0 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 0 67.32600000000001 0.055935000000000006 46040000.0 24752.0 31581.0 37780.0 43435.0 35735.0 33387.0 40160.0 35190.0 39553.0 39365.0 False True 24618.737982205723 32632.154493882368 43099.09561035323 48933.86654650915 40285.640432060696 31079.03527454427 38217.307373901705 37816.056491199284 29805.693133046254 36852.69199792791 0.6680309265762713 0.8854754625718293 1.16949653536237 1.327823393451434 1.0931532609429402 0.8433314797272266 1.037028919788289 1.026140953103929 0.8087792646117172 1.0 15.169482388020642 1.2746178958396122 24.529150650222043 0.9043893102988647 1.017671240371927 0.04732501649601806 0.17714130060718158 400.8730408037141 272707.0800482748 0.12533987371600214 0.045766955318207174 18.819925323639584 -1.2746178958396122 0.11328193007306231 YGGSVGSQPPPVAPEPGPVPS(ph)SPSQEPPTKR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 A0A087WTZ5;Q04323;E9PJ81;E9PRQ7;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 YGGSVGSQPPPVAPEPGPVPS(0.452)S(0.452)PS(0.095)QEPPT(0.001)KR 136.39 8.592399999999998e-07 1664200000.0 637520.0 547590.0 541730.0 477410.0 600580.0 589210.0 537600.0 512470.0 646270.0 625130.0 True False 634087.6631551307 565816.2021248551 618000.8751984285 537850.0570500493 677060.3030834491 548479.2995511492 511594.23416856426 550713.1136699311 487005.418074326 585233.6681992813 1.0834777587321136 0.9668210030804067 1.0559899554309125 0.9190347142962098 1.1569059332603184 0.9371971049423345 0.8741708858663243 0.9410140659959512 0.8321555039251313 1.0 19.158653243822513 2.497637043484938 24.972043383954745 0.9089381114944486 1.0291318479073568 0.40667708920099055 0.07240893333129887 724.5483120785931 881927.9929133465 0.02167585013921631 0.020206636471186843 314.51187193787797 -2.497637043484938 0.1201937364129082 YGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 A0A087WTZ5;Q04323;E9PJ81;E9PRQ7;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 YGGSVGSQPPPVAPEPGPVPS(0.107)S(0.729)PS(0.161)QEPPT(0.003)KR;YGGSVGSQPPPVAPEPGPVPS(0.059)S(0.781)PS(0.157)QEPPT(0.002)KR;YGGSVGSQPPPVAPEPGPVPS(0.111)S(0.777)PS(0.111)QEPPT(0.001)KR 261.25 7.7347e-59 3038980000.0 1411150.0 1295120.0 1284590.0 1185990.0 1216390.0 1464970.0 1295190.0 1062020.0 1583800.0 1437530.0 True False 1403552.5251935052 1338227.2862834283 1465449.1061435596 1336136.2123977058 1371290.0563916147 1363700.0720684438 1232536.7115937204 1141273.3252282895 1193493.7118326973 1345785.604668647 1.04292431151326 0.9943837128596128 1.0889172101854778 0.9928299186456842 1.0189513482938817 1.0133115314487313 0.9158492313470612 0.8480350222718338 0.8868379240291797 1.0 20.360017163731783 2.217043075649918 3.786480513929404 0.8919463698997064 1.026257008974689 0.5938265459772974 0.04480736661342394 0.12653341887562328 3.918645535271001 0.016543846181794032 0.012347459876184762 164.8325873195494 -2.217043075649918 0.13431063907498253 YGIDKDK ddPTM_BT-474_Trastuzumab_2h_R1 2 YGIDKDK 7 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ; 69.598 0.054086 1238370000.0 2212700.0 1552140.0 1530890.0 1255370.0 1442830.0 1974000.0 1911870.0 1791100.0 2709760.0 1823200.0 False True 2200787.06905408 1603802.041611556 1746426.0052655793 1414299.7132840145 1626565.8481765816 1837542.0262961749 1819385.544047346 1924760.977021511 2041975.9569237053 1706841.815079947 1.289391348167198 0.939631328130097 1.0231914813873821 0.8286062016929026 0.9529681273366241 1.0765742964939642 1.0659368243577556 1.1276739062848404 1.1963475108723305 1.0 20.702897929286543 2.4987816169869475 3.088819098832745 1.1081673925966526 0.994698184739849 0.10912091140289604 0.11922221216090728 0.4837861534395928 9.435963651621957 0.04288301224152871 0.037420253282245686 315.34185424008524 -2.4987816169869475 -0.1134692078568037 YGIICMEDLIHEIYTVGK ddPTM_BT-474_Trastuzumab_2h_R1 2 YGIICMEDLIHEIYTVGK 18 0 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ; 220.61 6.6884e-19 3241200000.0 4012000.0 4038800.0 3667400.0 3716100.0 3724900.0 4391100.0 4212700.0 4026200.0 5390800.0 4580300.0 False True 3990399.8377751014 4173229.016493848 4183738.042387751 4186557.8789796825 4199243.935787969 4087553.59253756 4008915.606923205 4326655.488629348 4062309.573019134 4287981.332607878 0.9306010283743953 0.9732386157464357 0.9756894253649354 0.9763470393733007 0.9793055543070799 0.9532582526546538 0.9349190903508551 1.0090191987841393 0.9473710956079432 1.0 22.03186719447325 YGIICMEDLIHEIYTVGKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGIICMEDLIHEIYTVGKR 19 1 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 ; 196.71 5.3375e-16 587810000.0 296700.0 452160.0 365830.0 437520.0 414940.0 395300.0 447900.0 365240.0 644920.0 455650.0 False True 295102.60016646923 467209.87226350803 417335.6841486374 492909.98714006407 467780.1494579336 367973.8414361088 426233.3658558413 392496.06345114077 485988.10748525255 426570.02689840854 0.6918034122372845 1.0952712164532326 0.9783521059439781 1.1555195069002233 1.0966081064325217 0.8626340770157886 0.999210771921752 0.9201210556329529 1.1392926760908941 1.0 18.702423072172962 4.7470229690881816 24.527818951237734 1.0186253282695794 0.6918031968773255 0.5522441903688443 0.09035411741423198 661.083098640679 1916069.047740308 0.021876279294594823 0.2509346919327725 55849.97320459695 -4.7470229690881816 -0.3268221313922539 YGINTTDIFQTVDLWEGK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGINTTDIFQTVDLWEGK 18 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 220.76 1.5831e-18 0.0 56252.0 55174.0 39545.0 42519.0 42586.0 54474.0 51547.0 43558.0 64526.0 57773.0 False True 55949.145482184766 57010.433236612655 45112.59226869819 47901.901040428704 48009.07467300233 50708.34059800295 49053.474681337444 46808.51914304233 48624.43190410192 54085.87767804623 1.034450172283972 1.0540724433830075 0.8340918961736595 0.8856637461921482 0.8876452917854654 0.9375523292762569 0.9069553234087303 0.865448082800405 0.8990227022577995 1.0 15.722964321779665 4.2513613083156425 24.999932361212117 0.8961350897451666 1.0442614066581788 0.6432205151227258 0.042182972821929954 121.89631156975747 238060.77148095137 0.009651292587086687 0.02606397217428383 17838.62222228807 -4.2513613083156425 0.14812631691301215 YGISSMIQSQEKPDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGISSMIQSQEKPDR 15 1 P14868;H7C278 P14868 DARS Aspartate--tRNA ligase, cytoplasmic 0 ;; 260.29 6.172699999999999e-25 3338470000.0 1366830.0 1364780.0 1243000.0 1156210.0 1310260.0 1541490.0 1547090.0 1509730.0 1823210.0 1687440.0 False True 1359471.13914909 1410205.877273069 1418003.59565032 1302586.0674511164 1477113.844480535 1434930.4245771486 1472251.3462422704 1622393.7188536045 1373904.3252623393 1579746.1345099339 0.8605630420300555 0.8926787959576433 0.8976148538513187 0.8245540463722688 0.9350324157867066 0.9083297583268278 0.9319543906964455 1.0269964796317737 0.8696994379344055 1.0 20.591261304998543 2.5139112190785577 1.3136254017588977 0.968756669570285 0.8756074092140524 0.3915741781837724 0.04581378057743118 0.4140673790260934 1.4481747981360364 0.022952315493089015 0.017454758175132413 326.52107607377775 -2.5139112190785577 -0.0931492603562325 YGKIETIEVMEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGKIETIEVMEDR 13 1 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 151.07 4.0633e-05 555510000.0 359348.0 615590.0 635240.0 791460.0 828920.0 746140.0 957650.0 665370.0 1217420.0 784120.0 False True 357413.3102953165 636079.5410179875 724676.270394939 891658.7548497773 934478.0486062339 694561.0980246346 911324.8109217377 715023.2880804004 917403.1535922223 734076.7902810943 0.4868881771326063 0.8665027275612659 0.9871940919388617 1.2146668668114973 1.2729976767803837 0.9461695386918197 1.241457055974718 0.9740442655959769 1.2497373105079759 1.0 19.485571462795527 4.675744214848231 1.4811751852510562 1.1210847476263655 0.2904542827219922 0.7360335539310658 0.11720155572916911 0.48681624945650187 1.0815282644603055 0.030372420381313908 0.5745842089591278 47396.2754581081 -4.675744214848231 -0.8306304649043732 down YGLDTEQVWR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGLDTEQVWR 10 0 Q9NXC5;Q9NXC5-2 Q9NXC5 MIOS WD repeat-containing protein mio 0 ; 131.5 0.00057785 142881000.0 168383.0 190716.0 171855.0 192886.0 168069.0 177326.0 172784.0 162374.0 194422.0 183930.0 False True 167476.44463711005 197063.8667697436 196050.69020956176 217305.3478229526 189471.59092699064 165067.87100050424 164425.7778210219 174491.1723984651 146509.30322132615 172191.42992960458 0.9726177702663709 1.1444464271555639 1.1385624144576263 1.2619986250871575 1.1003543614478988 0.9586300030610548 0.9549010533697442 1.0133557312916253 0.8508513070669207 1.0 17.39365381516381 2.7944610882133243 4.453288538733804 0.9605677187219626 1.1359319455642203 0.5428869718979983 0.07709874698569473 0.16987272688060234 7.119754913183003 0.024333809925981706 0.025471735919279006 622.9613290262681 -2.7944610882133243 0.17536422684225772 YGLFQHICTAYELVLADGSFVR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGLFQHICTAYELVLADGSFVR 22 0 A0A0A0MTI1;Q15392-2;Q15392;A0A3B3IT58;A0A3B3ITT9 A0A0A0MTI1 DHCR24 Delta(24)-sterol reductase 0 193.11 8.3146e-18 44589000.0 20896.0 29879.0 30485.0 28329.0 33125.0 29714.0 26346.0 24883.0 26353.0 29170.0 False True 20783.498257763866 30873.504452763074 34777.02301962992 31915.448495362198 37343.27240274275 27659.941119232306 25071.543328506345 26739.895813313782 19858.656262108252 27308.345626306567 0.761067643648936 1.13055198858411 1.2734943191186456 1.1687067730905505 1.3674674003967993 1.0128750198835568 0.9180908895614139 0.9791840259834272 0.7272010005241069 1.0 14.737054296032063 2.4904005116163166 13.116572677831618 0.919434738704436 1.1528542070668726 0.3156926137460251 0.16182542121397614 1.5950751074547933 1574.5214407145734 0.05438161425923512 0.048891196010884964 309.31466547976225 -2.4904005116163166 0.23341946836243654 YGLQDS(ph)DEEEEEHPSK ddPTM_BT-474_Trastuzumab_2h_R1 6 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-5;P52948;P52948-2;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK 323.03 1.6637e-58 8714160000.0 4875400.0 4397790.0 3876930.0 3795050.0 3793820.0 4986540.0 4831350.0 4552420.0 5569560.0 4672890.0 True False 4849151.38810786 4544167.781629808 4422768.045120348 4275502.940884758 4276940.489267122 4641832.226852546 4597639.142950694 4892144.697120359 4197016.566280409 4374662.159537593 1.1084630564067195 1.0387471342724515 1.010996480145987 0.9773332853974451 0.9776618932601643 1.0610721599912514 1.050970103583192 1.1182908573761647 0.9593921572046694 1.0 22.060740176079563 YGMGTS(ph)VER ddPTM_BT-474_Trastuzumab_2h_R1 2 YGMGTSVER 9 0 P08559-3;P08559;P08559-2;P08559-4 P08559-3 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1 YGMGT(0.007)S(0.993)VER;Y(0.002)GMGT(0.029)S(0.97)VER 95.822 0.008165899999999999 730260000.0 1251070.0 1423490.0 1167800.0 1142130.0 1203880.0 3759300.0 1690690.0 790630.0 1763680.0 1639500.0 True False 1244334.378126944 1470870.0041321244 1332216.0893004348 1286723.5408947715 1357186.982044193 3499428.4394403277 1608904.865637 849630.8253377915 1329044.6961012054 1534865.7063534323 0.8107122160434875 0.9583053410103544 0.8679691544255967 0.838329721987077 0.8842382603417648 2.27995740927351 1.0482382002393367 0.5535538528360002 0.8659029194539626 1.0 20.54968100130167 2.9467227841174837 24.999936922229143 1.1181692934525473 0.8734166622549612 0.09627907166661698 0.41993256527478406 1042.7790216669514 489315.5481417533 0.14248755506985805 0.15113189589065645 884.5508091692018 -2.9467227841174837 -0.24475263119758617 YGNPWEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGNPWEK 7 0 P11216;P11217;P11217-2;E9PK47;P06737-2;P06737 P11216;E9PK47 PYGB;PYGM;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form 0 128.57 0.008712899999999999 755590000.0 703710.0 779270.0 619360.0 630400.0 663900.0 762450.0 712790.0 705640.0 889590.0 709120.0 False True 699921.3035495303 805207.5308713366 706560.5044263727 710208.5753636317 748443.7297564052 709743.6261142454 678309.6245777737 758298.4399673156 670362.464395282 663863.3544918239 1.054315317773954 1.2129115508834032 1.0643161723653698 1.0698113859700604 1.1274063023546859 1.0691110170669715 1.0217609090608837 1.1422507882631663 1.0097898307829223 1.0 19.340526791183073 -4.999999528470104 0.07955873710651096 0.6732324877886724 1.189541962155754 0.25692683573061603 0.0542160541195782 338.34965040328325 1.9085372786302235 19.11434658416107 1.8117354203670921 1.0000010857382988e-05 4.999999528470104 0.5163094743670815 YGPADVEDTTGSGATDSKDDDDIDLFGS(ph)DDEEESEEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAK 38 1 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAK 160.61 5.9458e-18 25135000.0 40180.0 27732.0 20737.0 25806.0 22435.0 32862.0 31730.0 31096.0 56727.0 29230.0 True False 39963.67534441768 28655.042855652006 23656.589350764818 29073.036954051204 25291.96426733684 30590.32728882722 30195.098679629034 33416.54142228852 42747.39095285602 27364.51637493797 1.4604195739055252 1.0471605806231596 0.864498718947977 1.0624356212148516 0.924261328824386 1.1178829864811217 1.1034398805338828 1.2211632379841126 1.5621467731111296 1.0 14.740018738939938 1.648541418871504 3.462694676907068 1.3089441704624567 1.0662801646637226 0.1442610353506003 0.19532506597816635 0.2929469671514535 8.29860970514218 0.11384601649439104 0.05029170485627317 44.51859184885732 -1.648541418871504 -0.24266400579873415 YGPADVEDTTGSGATDSKDDDDIDLFGS(ph)DDEEESEEAKR ddPTM_BT-474_Trastuzumab_2h_R1 9 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 YGPADVEDTTGSGATDSKDDDDIDLFGS(0.999)DDEEES(0.001)EEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGS(0.001)GAT(0.001)DS(0.004)KDDDDIDLFGS(0.948)DDEEES(0.046)EEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDS(0.001)KDDDDIDLFGS(0.818)DDEEES(0.18)EEAKR;YGPADVEDTTGSGATDS(0.001)KDDDDIDLFGS(0.804)DDEEES(0.194)EEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR 428.38 3.617699999999996e-221 55622028000.0 4377326.0 2596129.0 2270945.0 1929356.0 2361743.0 3433464.0 3416533.0 3551717.0 6503627.0 3389312.0 True False 4353758.963182635 2682539.5843718797 2590674.3165922062 2173612.271778671 2662496.9719025157 3196116.715184891 3251262.2463665 3816764.157793484 4900895.269986962 3173003.206424011 1.372125610956864 0.8454260553348492 0.8164739043903797 0.6850331154339873 0.8391094489006716 1.0072844265376364 1.024664028004777 1.2028869526718804 1.5445604530322217 1.0 21.59741754847121 1.8660236011685862 1.9324489758229644 1.2896333101708615 0.9018765378538134 0.31535370294373744 0.21064936529758502 0.3546638488767091 2.4880084837985597 0.1348835164764021 0.06185934912826303 73.45537854422675 -1.8660236011685862 -0.3877567723170481 YGPIADVSIVYDQQSR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGPIADVSIVYDQQSR 16 0 P62995;P62995-3 P62995 TRA2B Transformer-2 protein homolog beta 0 ; 172.13 1.089e-08 147276000.0 311760.0 269440.0 250029.0 273780.0 300450.0 296010.0 279220.0 285690.0 432850.0 323890.0 False True 310081.51879979233 278408.14752008056 285230.90990897315 308440.51992870413 338710.5265933299 275547.52543258906 265713.06187601684 307009.6385044252 326179.91739284137 303219.06290381995 1.0226320068080585 0.9181749486785752 0.9406760484562523 1.017220081662677 1.1170489195158806 0.9087407724097867 0.8763072457627775 1.0125011124442647 1.0757236509773942 1.0 18.210000930756784 1.4949171497591673 10.521480944016673 1.0399368431603604 0.9713574565239059 0.1405618901654726 0.06749778040402177 0.1840567809406775 58.96888041952981 0.03826911795210919 0.01773773661728372 31.254830626889436 -1.4949171497591673 -0.06857938663645446 YGPLS(ph)EPGSAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGPLSEPGSAR 11 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 YGPLS(0.999)EPGS(0.001)AR 127.34 0.00030272 467250000.0 453950.0 390770.0 396350.0 430140.0 356840.0 404710.0 466060.0 407290.0 513000.0 415220.0 True False 451505.9836385864 403776.5432245471 452152.6348640412 484595.67989675165 402281.4588436137 376733.35028486553 443514.8972779039 437684.0479767142 386578.0238478173 388720.30411227315 1.1615189092571276 1.038732834258962 1.1631824478441626 1.2466436015052793 1.034886664236154 0.969163036505689 1.1409614897548666 1.1259613746605297 0.9944888902334336 1.0 18.56837294068621 3.1877371542598865 24.9998910721027 1.0587223437601825 1.1451547506871143 0.3493073250858949 0.07047418174986697 152.58538183275786 75055.52469042607 0.021767520053933176 0.0260171902284214 1540.767660084837 -3.1877371542598865 0.08643240692693177 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK ddPTM_BT-474_Trastuzumab_2h_R1 4 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK 35 0 A0A3B3ITJ4;P14866;M0QXS5;P14866-2 A0A3B3ITJ4;P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ;;; 237.34 1.5599e-47 2121470000.0 1166962.0 1107195.0 1127734.0 1054513.0 1063675.0 1363453.0 1278390.0 1177708.0 1705830.0 1370609.0 False True 1160679.2062536657 1144047.316261488 1286509.1447603526 1188014.237678345 1199127.7063543363 1269200.7033331296 1216549.3917759508 1265594.5512400488 1285451.0534509202 1283135.5601825982 0.9045647570460084 0.8916028452197856 1.0026291723824365 0.9258680645630951 0.9345292450500655 0.9891399963636847 0.9481066767433585 0.9863295746085837 1.0018045585674458 1.0 20.291242165061167 7.999999999998464 0.19217844912278595 1.0065426871700545 0.5198754312898848 0.5149017794953985 0.028197002545260294 42.98858327038401 0.5056415893079323 0.054300693900081035 6.233206339503789 99999999.9996464 -7.999999999998464 -0.4866672558801697 YGQFSGLNPGGRPIT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 6 YGQFSGLNPGGRPITPPR 18 1 P62136;P62136-2;P62136-3 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 1 YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR 216.38 1.4538e-18 12381790000.0 5658230.0 4747040.0 4579990.0 5135680.0 4522110.0 4719010.0 4794380.0 4729450.0 6133700.0 6230050.0 True False 5627766.718368449 4905042.356753721 5224812.782013272 5785856.561426861 5097973.903854101 4392795.946054666 4562457.523089814 5082385.574660486 4622131.822369116 5832442.875185845 0.9649073019320614 0.8409927815362317 0.8958189379346109 0.9920125555010259 0.8740718105518794 0.7531657043301421 0.7822549865856055 0.8713991175607597 0.7924864282913078 1.0 22.475668841385396 2.9993991471739188 24.998451581264376 0.8288518226059188 0.9177556799227664 0.2136876759297205 0.07378020649913547 30.867488950215165 1284334.6663127877 0.02050141421721993 0.024236532440460062 998.6174418549134 -2.9993991471739188 0.08890385731684758 YGQFSGLNPGGRPITPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGQFSGLNPGGRPITPPR 18 1 P62136;P62136-2;P62136-3 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 0 ; 171.71 1.1493e-11 1754140000.0 466160.0 556480.0 498810.0 535290.0 490180.0 555150.0 531090.0 505600.0 590680.0 519570.0 False True 463650.24635524536 575002.1004007367 569038.1122657574 603057.6591154798 552601.5174755156 516773.7871825338 505399.14773918025 543330.4393847786 445114.8287064886 486410.59777374356 0.9532075338763789 1.1821331669837545 1.1698719453691846 1.23981192407324 1.1360803403641322 1.0624229602474942 1.0390381090633007 1.117020151023748 0.9151010087850432 1.0 18.891815136583983 2.6777757080917852 3.388811996228666 1.0388994465101546 1.147108957618574 0.29190849165609567 0.08423091849301288 0.3472095661741715 7.9670421887415035 0.028514168152655558 0.027362505626440676 476.1849969748375 -2.6777757080917852 0.10820951110841937 YGQNCHK ddPTM_BT-474_Trastuzumab_2h_R1 4 YGQNCHK 7 0 O15355 O15355 PPM1G Protein phosphatase 1G 0 ;;; 108.98 0.0071304 1246370000.0 630926.0 649599.0 603375.0 554462.0 550727.0 495341.0 664336.0 585739.0 780290.0 666297.0 False True 627529.1645184688 671220.5100241125 688324.9553704843 624656.8323497309 620858.819035329 461099.2425772919 632199.5296700293 629449.818502375 587997.9848503191 623773.3550144386 1.0060211124342482 1.0760647350968937 1.1034856648446476 1.001416343497506 0.9953275721771698 0.7392095844918203 1.0135083914499612 1.0091002019279984 0.942646844600646 1.0 19.25066240257444 3.369583377309332 2.8027079606402903 0.9483901337188967 1.0617964559571096 0.290057398503773 0.07851826484231651 0.3546438423973469 5.620471073350635 0.023984370851810807 0.03439081738991317 2341.981053379397 -3.369583377309332 0.1134063222382129 YGQNGDFTR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGQNGDFTR 9 0 O76094-2;O76094;R4GNC1 O76094-2 SRP72 Signal recognition particle subunit SRP72 0 172.94 0.0016952000000000002 0.0 213880.0 243970.0 235410.0 250900.0 242650.0 237100.0 233990.0 237850.0 311810.0 241640.0 False True 212728.49384430176 252090.39396702088 268553.681779599 282663.9142746435 273550.03920077026 220709.83507336525 222671.00977139574 255599.57477782742 234968.6035399375 226218.32832158773 0.9403680746057451 1.1143676811573549 1.1871437817267756 1.2495181817134366 1.2092302212219368 0.9756496598260079 0.9843190488741071 1.1298800440894068 1.0386806643089967 1.0 17.787356296370444 2.738769897509681 24.999999806297506 1.0381537190242394 1.147384080923436 0.29303547776011907 0.08743998092281506 27.94638636135752 3338465.3736412376 0.029603307230598938 0.02965968149881932 547.9865479699455 -2.738769897509681 0.10923036189919655 YGREDLDVLGLTFR ddPTM_BT-474_Trastuzumab_2h_R1 4 YGREDLDVLGLTFR 14 1 P49407-2;P49407;E9PM35 P49407-2 ARRB1 Beta-arrestin-1 0 ;;; 210.02 5.3079e-09 750009000.0 590602.0 673738.0 649266.0 653972.0 608588.0 656743.0 694151.0 573873.0 814657.0 708383.0 False True 587422.2644540505 696162.9620467777 740677.0092787602 736764.78814674 686088.074416313 611343.9022167323 660572.264215669 616698.3173280479 613895.6981945257 663173.3904628007 0.8857747806257926 1.0497450170021976 1.116867805509918 1.1109685622829089 1.0345530811143087 0.921846248671258 0.9960777584195342 0.929920178036215 0.9256941050757688 1.0 19.33902659493524 2.830706833954875 5.783336193586238 0.9524012784078933 1.049593340892371 0.2977886753984491 0.06445503121655675 0.2744069857596165 13.86454818357521 0.02036607840102648 0.02162876091074265 677.1842270050967 -2.830706833954875 0.09719206248447765 YGRPPDSHHSR ddPTM_BT-474_Trastuzumab_2h_R1 8 YGRPPDSHHSR 11 1 Q01130;Q01130-2;J3KP15;J3QL05 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 0 ;;;;;;; 136.7 5.6345e-05 944061000.0 436547.0 1007685.0 1193029.0 1159284.0 1123493.0 1050477.0 1089755.0 729688.0 936747.0 1031242.0 False True 434196.6794569315 1041225.1860665533 1360997.1132060357 1306049.235535932 1266563.1740852718 977859.997546874 1037039.3873816306 784141.0238405863 705898.253616709 965427.2526693057 0.4497456211811122 1.0785123199989168 1.4097355439708383 1.3528199374161463 1.3119198474906906 1.012877971740691 1.0741766244057487 0.8122217615801897 0.7311770531285231 1.0 19.880808027069666 1.88443997561093 2.444962404694968 0.8255623211933493 1.1361852987371777 0.152301219047576 0.2614479717583237 0.48948593030848364 5.330644125678234 0.15657108926088134 0.07812963206907614 76.6372611515553 -1.88443997561093 0.3106229775438284 YGS(ph)FEEAEASYPILNR ddPTM_BT-474_Trastuzumab_2h_R1 4 YGSFEEAEASYPILNR 16 0 O95425-2;O95425-3;A0A6I8PIX7;O95425-4;O95425 O95425-2 SVIL Supervillin 1 YGS(1)FEEAEASYPILNR;YGS(1)FEEAEASYPILNR;YGS(1)FEEAEASYPILNR;YGS(1)FEEAEASYPILNR 379.19 7.7308e-105 1485320000.0 524720.0 391399.0 358890.0 403463.0 396076.0 480657.0 381692.0 393980.0 580212.0 459311.0 True False 521894.96582187206 404426.4791093078 409418.5924721986 454541.37443200673 446513.93087362207 447430.3129348742 363228.0997549624 423380.78818990284 437226.52704247594 429997.378744069 1.213716621590151 0.940532429036083 0.9521420657679898 1.0570794076922643 1.0384108204980096 1.040541954561963 0.8447216604340112 0.9846124863051681 1.0168120752724625 1.0 18.713968339636526 YGS(ph)PPQRDPNWNGER ddPTM_BT-474_Trastuzumab_2h_R1 2 YGSPPQRDPNWNGER 15 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 YGS(1)PPQRDPNWNGER;YGS(1)PPQRDPNWNGER 142.97 2.7211e-06 2681500000.0 1545190.0 1323980.0 1203050.0 1221090.0 1251270.0 1616270.0 1525030.0 1355410.0 1981430.0 1522090.0 True False 1536870.8687267462 1368047.8739371884 1372428.982901945 1375679.86879882 1410611.8176416564 1504541.0591903336 1451258.4727196556 1456557.5768325229 1493133.1263017182 1424948.9130731896 1.0785445391246864 0.960068014639709 0.9631425872960072 0.9654239925218716 0.9899385196900762 1.0558561400952176 1.0184635108003446 1.022182313674083 1.0478502861421717 1.0 20.442478766371984 2.851085370398348 7.773356223863946 1.0286129973087073 0.9863448291264323 0.2165894754605011 0.03499457614962394 0.39351869302530046 24.557690046676132 0.01047602440716531 0.011125263727571425 709.7172652250571 -2.851085370398348 -0.04226816818227497 YGSIIDRDDRDER ddPTM_BT-474_Trastuzumab_2h_R1 1 YGSIIDRDDRDER 13 2 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3;F8WE23 P52756 RBM5 RNA-binding protein 5 0 96.591 0.0023436 590590000.0 344330.0 497650.0 421940.0 462880.0 413430.0 448330.0 447350.0 405400.0 521030.0 422900.0 False True 342476.16553865967 514213.97941422265 481345.48443177465 521480.56053984375 466077.8599084055 417338.0023553013 425709.9714570448 435653.0065794887 392629.1379443049 395910.1599370945 0.8650350513689145 1.298814810652814 1.2157947260263662 1.3171689269674234 1.1772313698200114 1.0541229919980115 1.0752691255124274 1.1003834977326898 0.991712710799564 1.0 18.59481356505005 2.7634983391251775 5.558429391637038 1.0568241306800044 1.1927118957496319 0.21816791396281077 0.12020130654854642 0.27712563204840157 27.682499623321508 0.03670991559268895 0.03787920128356108 580.0939540619005 -2.7634983391251775 0.13588776506962752 YGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 36 0 P54886-2;P54886 P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase 0 41.174 0.080881 14591000.0 1392.4 1855.1 1007.8 2159.8 1248.0 2718.1 1614.5 2080.2 1447.7 1453.9 False True 1384.9034731101826 1916.8458820683697 1149.6894800453665 2433.230458550717 1406.925402524466 2530.204144719166 1536.4004670110633 2235.435087041568 1090.9337331861311 1361.1108572535854 1.017480292460972 1.4082951964222312 0.844669979611492 1.7876798539836989 1.0336596721910838 1.8589258407831284 1.1287842271063597 1.64236077842489 0.8015024840720095 1.0 10.410568858261412 3.76311243831929 24.982425297941752 1.3634771118412983 1.1219632591115714 0.07057941248036737 0.3584381820645592 1880.3959800561538 1913368.9919015502 0.08359776242643442 0.15062286929020768 5795.7872924066205 -3.76311243831929 -0.24151385272972692 YGTCPHGGYGLGLER ddPTM_BT-474_Trastuzumab_2h_R1 6 YGTCPHGGYGLGLER 15 0 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic 0 ;;;;; 243.92 5.284700000000001e-18 9464210000.0 4797210.0 5977350.0 5800670.0 5502280.0 5193140.0 5392350.0 5577820.0 4928020.0 7398640.0 5771440.0 False True 4771382.3543801345 6176302.481365629 6617353.915672513 6198868.08383852 5854455.596847679 5019589.536726538 5307999.5372583745 5295773.876378508 5575344.30869672 5403101.758021618 0.8830820828603473 1.1431031207576448 1.2247324244538198 1.1472795370983864 1.0835360611441318 0.9290199891709043 0.9823985878811089 0.9801358763077583 1.0318784576691313 1.0 22.36535642219656 2.8896926353590064 5.5036631678675665 0.9835153849533539 1.11202759676935 0.29571803502213534 0.08544566907136417 0.2717599367994706 11.523805223196506 0.026756868939681776 0.028566927088163656 775.6979351013724 -2.8896926353590064 0.12851221181599615 YGVFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YGVFLR 6 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 0 118.11 0.051518 389090000.0 425440.0 522920.0 453860.0 477180.0 424800.0 460990.0 433420.0 383610.0 514530.0 458450.0 False True 423149.4783108275 540325.0760881852 517759.54297816067 537590.9390736321 478895.76201313536 429122.84635373537 412453.8187748125 412236.92613210983 387730.97584876756 429191.3285012084 0.9859227114129268 1.2589375418535835 1.2063606801801983 1.252567103233351 1.1158095008244955 0.999840439116717 0.9610022183233631 0.9604968664481048 0.9033989041735169 1.0 18.711261402221172 2.7694436392832578 2.501021997508561 0.9559526730436916 1.1842703467082132 0.6464626018232241 0.07472220574705378 0.1695088512083736 2.0959521901020652 0.024935134972175366 0.025327381358053992 588.0897896345788 -2.7694436392832578 0.2283176736645216 YGVIILDEAHER ddPTM_BT-474_Trastuzumab_2h_R1 8 YGVIILDEAHER 12 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;;;;;;; 215.04 4.2377e-11 10922090000.0 5650650.0 7144380.0 6397640.0 6856410.0 6468260.0 6577500.0 6532760.0 5932280.0 7406940.0 6844310.0 False True 5620227.528246237 7382176.369431082 7298372.1027162485 7724430.80299645 7291954.57061932 6122812.906769544 6216745.441233319 6374976.857107463 5581598.884911018 6407500.276091398 0.8771326236562567 1.152114873404928 1.1390357843524412 1.205529531043327 1.138034218715234 0.955569667256337 0.9702294457060188 0.9949241642477503 0.871103963231636 1.0 22.611330205005004 2.7341849726094702 24.590756692897198 0.9621186757023359 1.1129011848758625 0.39660511706813173 0.0882738777688558 300.0376015988977 1686181.6689205323 0.02809530399815531 0.027335404163364177 542.2317859721951 -2.7341849726094702 0.15078250917352665 YGVQADR ddPTM_BT-474_Trastuzumab_2h_R1 3 YGVQADR 7 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;; 127.12 0.0090405 1532460000.0 1360020.0 1664090.0 1691170.0 1645130.0 1746420.0 1620350.0 1540440.0 1336040.0 1395340.0 1446180.0 False True 1352697.8034324257 1719478.2296863522 1929272.0360868482 1853403.28932102 1968816.2351576723 1508339.0183936218 1465923.0321477372 1435742.089073655 1051477.1535980778 1353883.5542630116 0.9991241855129621 1.2700340618454093 1.4249911153821868 1.368953248220762 1.454199091907428 1.1140832707837185 1.0827541464197152 1.0604620202032096 0.7766378063218671 1.0 20.368672229277244 2.0838490656002695 1.3534517203642646 0.9293019779789203 1.3059249664840589 0.5493054298007902 0.13900671046828172 0.3400521746453629 1.1719134747853344 0.0966718761666653 0.048719027652004004 121.29672234248937 -2.0838490656002695 0.37662298850513853 YGVQADRVDK ddPTM_BT-474_Trastuzumab_2h_R1 4 YGVQADRVDK 10 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 ;;; 149.96 2.0449e-05 5473900000.0 3452320.0 3735640.0 3492370.0 3495610.0 3083900.0 3630410.0 4116610.0 3539570.0 6043900.0 3956130.0 False True 3433733.0927088098 3859978.5191579335 3984065.339775792 3938153.8675870276 3476616.3852926306 3379448.3017659043 3917473.847322649 3803710.686972274 4554461.8291107705 3703646.3963867044 0.9271222803717916 1.04221032626758 1.0757142862403564 1.0633179969419084 0.9387009485258729 0.9124651600279419 1.057734305074198 1.0270177765035 1.2297237213450307 1.0 21.820514933977577 1.4158622853717995 9.591596836006834 1.1199052945608576 1.007626900277348 0.2500270730001979 0.07627911373141602 0.4555829445253007 65.68035185589625 0.04862674300057126 0.018452820770920936 26.053272706337644 -1.4158622853717995 -0.11227839428350972 YGVSGYPTLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YGVSGYPTLK 10 0 H7BZJ3;P30101 H7BZJ3;P30101 PDIA3 Protein disulfide-isomerase A3 0 107.15 0.0075968999999999984 0.0 204770.0 280150.0 257700.0 223030.0 225390.0 242800.0 258440.0 274300.0 297040.0 240780.0 False True 203667.54107208576 289474.62339574844 293981.9200314458 251265.57513221886 254092.0805088055 226015.80748972206 245938.2698633255 294769.6588671775 223838.47213207724 225413.21425787063 0.9035297320195789 1.2841954467877477 1.3041911540072058 1.1146887548694167 1.1272279726162215 1.0026732826371132 1.0910552456874796 1.3076857975591605 0.9930139759952498 1.0 17.782212566635035 3.542340815749468 24.99975927488359 1.1131386008608952 1.181568720371149 0.0363658000053263 0.13447744689800242 701.7548692519127 268992.3038682126 0.03630892777616705 0.0562495129643903 3486.1078256315177 -3.542340815749468 0.06843011951025368 YGVYEDENYEVGS(ph)DDEEIPFK ddPTM_BT-474_Trastuzumab_2h_R1 3 YGVYEDENYEVGSDDEEIPFK 21 0 O15541 O15541 RNF113A RING finger protein 113A 1 YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK 165.87 9.1113e-12 564348000.0 530497.0 488312.0 452847.0 437924.0 456212.0 544627.0 511846.0 549187.0 688449.0 541874.0 True False 527640.8630957581 504565.1697291621 516603.9213833139 493365.13349864125 514307.8940196241 506978.2174040557 487086.053538399 590170.1226550794 518789.9686939691 507291.137398329 1.0401144908657263 0.9946264236289498 1.0183578684870114 0.9725483004274271 1.0138318139309135 0.9993831550145383 0.9601706350251792 1.1633755828690402 1.0226671243550842 1.0 18.95245443060236 1.7615235079830394 24.999999999934797 1.0783242981250096 0.9998401160879304 0.2585682549293886 0.04579601281523965 11.885297389243336 12949.556758769424 0.01967989234460669 0.010913759749702856 57.74621293914595 -1.7615235079830394 -0.07848418203707919 YGYIHLYDLETGTCIYMNR ddPTM_BT-474_Trastuzumab_2h_R1 4 YGYIHLYDLETGTCIYMNR 19 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ;;; 290.95 1.5395999999999992e-49 2965700000.0 1993510.0 2485330.0 2345390.0 2431950.0 2173660.0 2331330.0 2526300.0 2252810.0 2551950.0 2479510.0 False True 1982777.163659781 2568052.7066362915 2675600.5255046673 2739834.6206465503 2450462.716707795 2170170.6444605174 2404093.2175968126 2420926.121737389 1923056.1168780457 2321265.54898469 0.854179378368424 1.1063157800965706 1.1526473249365896 1.1803193399587308 1.055658073148768 0.9349083931434468 1.0356821168729924 1.0429337232856835 0.8284515822496831 1.0 21.146480143402144 2.9403606897792196 7.229879925611489 0.9834498045116157 1.0858237927112493 0.19422884547338304 0.10020389890284064 0.4594163040642368 48.57170206503808 0.0310594992513803 0.033188765177778204 871.6872421482574 -2.9403606897792196 0.10237398819963361 YGYTHLSAGELLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YGYTHLSAGELLR 13 0 P30085;P30085-3;Q5T0D2 P30085 CMPK1 UMP-CMP kinase 0 ; 174.05 2.0635e-05 1702210000.0 868260.0 1705130.0 1796860.0 1569660.0 1559160.0 1579720.0 1684810.0 1377450.0 1759590.0 1660600.0 False True 863585.3846327555 1761884.2212771492 2049842.2694128954 1768378.7950591338 1757709.784134653 1470517.6746608887 1603309.3037007789 1480242.3135493745 1325962.621798015 1554619.086288814 0.5554964507056878 1.133322134544944 1.3185495324814762 1.1374997326712404 1.1306369512873131 0.9459022390953066 1.0313197090151505 0.952157558468556 0.8529180128383426 1.0 20.568129702965432 2.726320233830318 23.609553917448913 0.959681433807453 1.0786603217867854 0.05652967565589917 0.18942052957757005 1000.2913848807018 1929380.911499582 0.06209238540835622 0.05899253331431951 532.5007623073911 -2.726320233830318 0.11897888797933243 YHDEKK ddPTM_BT-474_Trastuzumab_2h_R1 2 YHDEKK 6 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ; 99.171 0.025383000000000003 146782000.0 611580.0 472970.0 427910.0 402560.0 420930.0 353600.0 561010.0 287550.0 910810.0 520740.0 False True 608287.3212329263 488712.5205335978 488156.00853960373 453524.05472459283 474532.9404524224 329156.4642848672 533871.8030336805 309008.4411493141 686353.0797287155 487505.92737205664 1.2477536929898523 1.0024750328022582 1.0013334836174226 0.9302944420991022 0.9733890683348893 0.6751845378767268 1.0951083321418535 0.6338557621546289 1.407886635201672 1.0 18.8950602345058 5.7877871810679515 0.9702649808346373 0.9247242847135171 3.1241572838582274 0.1281400819592453 0.204961301141211 21.256479210630687 3.354958767648753 0.05770462807272462 78.69114400432038 613461.3147784412 -5.7877871810679515 2.1994329991447104 YHDLECQLIQEFTSAQR ddPTM_BT-474_Trastuzumab_2h_R1 2 YHDLECQLIQEFTSAQR 17 0 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 EXOC5 Exocyst complex component 5 0 ; 132.64 2.2937e-05 167590000.0 62400.0 69059.0 66629.0 67767.0 69840.0 73581.0 66442.0 25867.0 77195.0 56646.0 False True 62064.04533329172 71357.587067953 76009.78405035006 76346.29525169294 78733.71002588829 68494.51866104301 63227.94662691182 27797.32688996453 58171.32661000443 53030.80378291948 1.1703395179026443 1.3455875072166328 1.4333138219344095 1.43965940181135 1.4846787981600869 1.291598727061048 1.1922871636216215 0.5241732145669963 1.0969346579796824 1.0 15.694542994987259 1.9541554403931123 6.187895208349095 0.8260386633352997 1.3633562987218557 0.639541389133276 0.1622984572652839 0.11575500549833055 11.192433268663905 0.06882734218783271 0.04296635780418373 89.98195825869132 -1.9541554403931123 0.537317635386556 YHEDFEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YHEDFEK 7 0 O76041-2;O76041;H0Y3P5;H7BZD5;H0Y786;A0A087X1N7;P20929-4;P20929;P20929-3;P20929-2 O76041-2;A0A087X1N7 NEBL;NEB Nebulette;Nebulin 0 140.98 0.0025874 364100000.0 494680.0 456160.0 407290.0 413610.0 380830.0 493870.0 466460.0 199800.0 619440.0 387650.0 False True 492016.6978441144 471343.00984545716 464632.89177185757 465972.98359161156 429326.44314374414 459729.9293449297 443895.5477497561 214710.09056384244 466787.312070745 362909.84511613735 1.355754616374931 1.2987881596174922 1.2802983937323802 1.2839910238381442 1.1830112875729573 1.2667882548014322 1.2231565324652516 0.5916347915420469 1.286234910274658 1.0 18.469251669605033 1.96483853993778 22.713186765683126 0.9122854858637269 1.272580419736201 0.4275835690801173 0.163156249042518 152.3821274612106 98433.27311829245 0.06337542093662744 0.04092921387753974 92.22285014209208 -1.96483853993778 0.360294933872474 YHEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 20 YHEEFEK 7 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;;;;;;;;;;;;;;;; 167.24 0.0010937999999999998 168105034400.0 119580323.0 112997129.9 98620875.4 100685757.1 91734879.4 120969860.3 112686674.5 43005917.0 141353058.6 87794814.1 False True 118936515.82759081 116758171.06051409 112505837.42830412 113432563.62531672 103416772.53636077 112607498.58988218 107235589.54953465 46215236.906161614 106518491.34197406 82191673.89921613 1.4470628250427335 1.4205595958987718 1.3688228027361917 1.3800979861343174 1.2582390360265807 1.3700596818111053 1.304701370129382 0.5622861138322962 1.2959766639208201 1.0 26.292488919034486 1.9171137244929284 9.621995827587861 0.9099126976397846 1.3682127807912063 0.5418853040091779 0.17298005730753727 0.2968743432803178 32.893728129668226 0.06832772578943327 0.04334734449421671 82.62542844642681 -1.9171137244929284 0.4583000831514218 YHEQLSTQSLIELFESFK ddPTM_BT-474_Trastuzumab_2h_R1 1 YHEQLSTQSLIELFESFK 18 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 140.16 1.2917e-07 134260000.0 141170.0 109200.0 124070.0 118300.0 115850.0 134260.0 160100.0 63522.0 150020.0 101320.0 False True 140409.9564054613 112834.65598720606 141537.97756422788 133276.76787042784 130602.81080325268 124978.92221404491 152355.35135860706 68262.33419818024 113049.58116500887 94853.6708555838 1.4802796258590525 1.1895655167526262 1.492171850467671 1.4050775965575841 1.3768872582917482 1.3175971060131904 1.6062146038667335 0.7196593825252237 1.1918313771654514 1.0 16.533415986846386 1.7413673853240081 24.999999999995172 0.9616726907114114 1.3994113865251743 0.6452187926419128 0.14906126716659623 0.26084239579254603 2337.2656438463337 0.06317774661151547 0.03503532581118814 55.127384158528066 -1.7413673853240081 0.4377386958137629 YHGHS(ph)MSDPGVSYR ddPTM_BT-474_Trastuzumab_2h_R1 5 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;Q5JPU3;P29803 P08559-3 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial 1 YHGHS(0.998)MS(0.002)DPGVSYR;YHGHS(1)MSDPGVSYR;YHGHS(0.989)MS(0.011)DPGVSYR;YHGHS(0.986)MS(0.014)DPGVSYR;YHGHS(0.991)MS(0.009)DPGVSYR 191.44 3.1424e-07 5508170000.0 3355370.0 2451780.0 2307706.0 2374851.0 2334059.0 4981330.0 2146245.0 463552.0 2873270.0 1727045.0 True False 3337305.06073665 2533386.0151676945 2632610.945859864 2675506.8931010426 2631287.5785984364 4636982.381889522 2042422.9298978993 498144.6041093609 2165191.1083454546 1616823.5095023853 2.0641121564120395 1.5668908822011145 1.6282611740783697 1.6547921757548487 1.627442675798471 2.8679582865025637 1.263231835691517 0.3081007921901608 1.3391635485383573 1.0 20.62473077388573 2.004661052322407 24.989091772843086 0.8005742963665843 1.8682062734829334 0.5336459588830998 0.431525161662545 89.60651038171125 480400.42565305054 0.15990924565047032 0.11765836993482941 101.07902691392606 -2.004661052322407 1.0676319771163492 YHIDLDPHFNDILGQHSR ddPTM_BT-474_Trastuzumab_2h_R1 2 YHIDLDPHFNDILGQHSR 18 0 P19784;H3BSA1;H3BV19 P19784 CSNK2A2 Casein kinase II subunit alpha 0 ; 124.26 1.1199e-05 352470000.0 394810.0 530940.0 406450.0 469560.0 422010.0 483570.0 426330.0 41720.1 488880.0 213708.0 False True 392684.386827515 548612.0169399926 463674.6270732678 529006.2478549283 475750.47205076047 450141.94410133857 405706.78916124336 44833.4657123752 368402.0746563762 200068.97247537636 1.9627450572119318 2.7421144325990547 2.3175738913255772 2.6441193819798126 2.3779323008684607 2.249933802987568 2.0278346219385717 0.22409004833517157 1.8413753522011893 1.0 17.610137919907544 1.9282214301540588 6.258485761991437 0.9661126751195107 2.387552318143027 0.6829538942044819 0.4143613333411686 0.11777812121054491 8.16136694469204 0.16976847342646775 0.10432325694093132 84.76594931520764 -1.9282214301540588 1.421439643023516 YHIEVNR ddPTM_BT-474_Trastuzumab_2h_R1 4 YHIEVNR 7 0 Q15029;Q15029-3;Q15029-2 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 ;;; 164.89 0.0011808 1926740000.0 1691320.0 1828530.0 1435290.0 1656530.0 1465530.0 1719480.0 1313910.0 813640.0 1992090.0 1450110.0 False True 1682214.1210433173 1889391.5156802721 1637366.3562356757 1866246.5281521517 1652156.5586231416 1600616.3948205416 1250351.1536763746 874357.9483802037 1501166.1121383994 1357562.738298367 1.2391428208702042 1.391752633140568 1.2061073201582033 1.3747037065052279 1.2170019933620397 1.1790367764710672 0.9210264236064872 0.6440644868289218 1.105780285351697 1.0 20.37258744149041 2.311007346926465 2.820477652888752 0.8557199404984885 1.2872476171399472 0.6450301160823146 0.12685182534312142 0.1408710521514691 2.2909356256500235 0.04993240052919927 0.03820720733792162 204.64792565645786 -2.311007346926465 0.43152767664145864 YHNEMK ddPTM_BT-474_Trastuzumab_2h_R1 1 YHNEMK 6 0 Q00059;Q00059-2 Q00059 TFAM Transcription factor A, mitochondrial 0 89.67299999999999 0.049899 90176000.0 237440.0 294220.0 301300.0 269490.0 319050.0 327830.0 261260.0 179720.0 291210.0 264510.0 False True 236161.64942206375 304012.9348402544 343720.42105345253 303607.4063685678 359679.1263424923 305167.88372881245 248621.85568987942 193131.61899966846 219445.19751407974 247628.74534159552 0.9536923877568685 1.2276964631908094 1.388047339089417 1.2260588161917616 1.4524934326438033 1.232360497194474 1.0040104808790027 0.779924070338643 0.8861862834678683 1.0 17.91781927022753 2.129729507692883 3.331864190152599 0.8689466406058223 1.262352995340952 0.6016520587472372 0.1329102770006579 0.15247511705500955 3.328024399167514 0.056452010874490456 0.03887832457513779 134.8122967532968 -2.129729507692883 0.39340635473512975 YHNTICGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YHNTICGR 8 0 Q9Y316-2;Q9Y316;Q9Y316-3 Q9Y316-2 MEMO1 Protein MEMO1 0 ; 103.56 0.0047486 216322000.0 121140.0 188524.0 203870.0 204790.0 202113.0 158437.0 172387.0 128093.0 172238.0 169435.0 False True 120487.79569991933 194798.9073748352 232573.12393019334 230716.3930024085 227850.89253239345 147484.6231105811 164047.98222770888 137651.95010307452 129792.25277095582 158621.51323939854 0.7595930289611716 1.228073691875806 1.466214255434468 1.4545088386226728 1.4364438207603714 0.9297895354710861 1.0342101703450557 0.8678012666246864 0.8182512581068853 1.0 17.275228926052346 2.722035586865357 23.558464742618092 0.9261652121651707 1.2879609706956654 0.41848875668256413 0.1991253305759492 380.5458067571657 542513.4982060124 0.06772169845451279 0.06404997558626495 527.2730653492097 -2.722035586865357 0.3617957585304947 YHNVGLSK ddPTM_BT-474_Trastuzumab_2h_R1 5 YHNVGLSK 8 0 Q14103-3;Q14103;H0Y8G5;H0YA96;Q14103-2;Q14103-4 Q14103-3;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 ;;;; 117.89 0.0019920000000000003 5951930000.0 9077790.0 10187830.0 8856860.0 9173380.0 9013360.0 10852220.0 10219050.0 3996810.0 12224650.0 8300720.0 False True 9028916.18727729 10526925.762876714 10103828.902792823 10334728.967432149 10161157.969629733 10102031.574778045 9724715.510937996 4295072.257589949 9212048.80941758 7770960.942996063 1.1618789816998136 1.3546491663125126 1.3002032794797873 1.3299164727815032 1.3075806253778621 1.2999719917371308 1.2514173706795997 0.5527079970027492 1.1854452592147389 1.0 22.889661580051733 1.8956516694293684 9.155182932026886 0.8700340965583329 1.29598767892807 0.5466914855139697 0.15487441245339342 0.2198069028495326 17.81120683529456 0.06071302987836324 0.03838167675758294 78.64147842218135 -1.8956516694293684 0.4259535823697371 YHPDEVGK ddPTM_BT-474_Trastuzumab_2h_R1 1 YHPDEVGK 8 0 Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 Q9BXP5-4 SRRT Serrate RNA effector molecule homolog 0 76.47800000000002 0.035699 223750000.0 227100.0 208240.0 188020.0 183560.0 175160.0 233560.0 201840.0 184930.0 295130.0 233880.0 False True 225877.31883318193 215171.14251626196 214491.58170086343 206798.67717916897 197465.58774534106 217414.54694110152 192076.22809632262 198730.41565551236 222399.16603938848 218953.57816525782 1.0316219571561345 0.9827249425166232 0.9796212672029199 0.944486401693263 0.9018605194764233 0.9929709702072341 0.8772463537972 0.9076372138824707 1.0157366136831527 1.0 17.74026550111293 4.4488180507724255 1.1253324024103466 0.9383904511463634 1.046525188906417 0.22420633251906574 0.043969683185064286 1.3149501184187982 1.961576919508338 0.013114746634403558 0.150095912770301 28107.23021222898 -4.4488180507724255 0.10813473776005367 YHPDKNPEGR ddPTM_BT-474_Trastuzumab_2h_R1 4 YHPDKNPEGR 10 1 O75165 O75165 DNAJC13 DnaJ homolog subfamily C member 13 0 ;;; 156.51 6.501e-06 449102000.0 462503.0 531872.0 484262.0 485088.0 455340.0 519639.0 522194.0 423001.0 628217.0 515693.0 False True 460012.9352369142 549575.0379965858 552441.8803192391 546500.0910628072 513324.8499883737 483717.5790286314 496933.48124519945 454567.4825755555 473401.3380265192 482781.0312330098 0.9528397047043324 1.1383525914284285 1.144290774863953 1.1319833541658848 1.0632664019076221 1.001939901808548 1.0293144284812612 0.9415603620850685 0.9805715374058191 1.0 18.881009467257837 2.7004380997790127 1.86146703861692 0.9795358374621622 1.0989776790696186 0.4309024077052592 0.05518298980105859 0.301898272155215 2.0751353451609975 0.021287822840322553 0.020326871752344072 501.6930673637004 -2.7004380997790127 0.11944184160745641 YHPGYFGK ddPTM_BT-474_Trastuzumab_2h_R1 3 YHPGYFGK 8 0 P46776;E9PLL6 P46776 RPL27A 60S ribosomal protein L27a 0 ;; 123.96 0.0013253 10257920000.0 13792510.0 13326380.0 12063960.0 11214000.0 11298340.0 13439320.0 13331310.0 11090850.0 16261090.0 13331260.0 False True 13718252.658651903 13769940.50233317 13762460.706179889 12633691.250202661 12737116.628492216 12510291.441156382 12686423.60475023 11918505.545195166 12253762.256942522 12480447.573334098 1.099179542884545 1.1033210484978295 1.1027217273509453 1.0122787004206473 1.0205656931492202 1.0023912498046985 1.0165038978134264 0.9549742086702415 0.9818367638612645 1.0 23.573166337213873 3.5875539042350564 1.0879142855824673 0.9860782543670394 1.1133568955849953 0.8571394867077602 0.019139699468243492 0.19159382463559188 0.4471911258999751 0.007228846065327985 0.017706361221424407 3868.600683721846 -3.5875539042350564 0.12727864121795585 YHPIDIETSVSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YHPIDIETSVSR 12 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 0 94.402 0.0066297 133070000.0 76029.0 83263.0 70991.0 79837.0 79642.0 80842.0 77702.0 74940.0 109410.0 96099.0 False True 75619.66831161609 86034.35862145355 80985.91573516629 89944.35601412796 89783.93662488261 75253.5828215984 73943.25740953468 80532.40333760936 82447.37151888842 89965.87954550674 0.8405371980314601 0.9562998667504323 0.9001847827675803 0.9997607589511989 0.9979776452857096 0.8364680387916783 0.821903345836046 0.8951438450270947 0.9164293389382662 1.0 16.4570903282815 2.731959683001608 24.99345297408783 0.8822526876325442 0.9411403425235377 0.09873145532235195 0.06295389559727026 960.923900076791 3638387.909131276 0.019991418142321863 0.019276510716531258 539.4605402778246 -2.731959683001608 0.05888765489099357 YHQFIVECHGNTLLPQFLGMYR ddPTM_BT-474_Trastuzumab_2h_R1 1 YHQFIVECHGNTLLPQFLGMYR 22 0 P78356;P78356-2 P78356 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta 0 164.02 8.3464e-12 353170000.0 127350.0 198260.0 144370.0 142270.0 135220.0 157770.0 142020.0 52657.0 158750.0 100660.0 False True 126664.36174991516 204858.96424929908 164696.0411134646 160281.36741272817 152439.465488268 146863.73125063215 135149.95003091445 56586.53272682808 119628.18964101556 94235.79262063815 1.3441215723607653 2.1738976088840563 1.7477015530232327 1.7008544519593256 1.6176387044563674 1.5584708014486226 1.434167912981674 0.600478132068423 1.2694559711785809 1.0 16.523987507630785 1.980560173992699 3.808600786171519 0.9234953412830528 1.705720136749912 0.6306990453938865 0.24933623949372555 0.12974050013359478 3.979517585557226 0.11147076670067883 0.06772145255405591 95.62251763271286 -1.980560173992699 0.7822247954668592 YHQIGSGK ddPTM_BT-474_Trastuzumab_2h_R1 4 YHQIGSGK 8 0 A0A087WUK2;O14979;O14979-2;O14979-3 A0A087WUK2;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 ;;; 146.58 0.00055098 5631650000.0 8129500.0 8328600.0 6930000.0 7333900.0 7542500.0 8731300.0 7680900.0 3117320.0 10228300.0 6552040.0 False True 8085731.675272354 8605812.416254988 7905683.763360193 8262370.988038282 8502992.667099984 8127725.78226939 7309345.5231125895 3349950.2478302172 7707672.517198121 6133883.197716333 1.3182076369309903 1.4029958085049554 1.288854630669118 1.3470049431515736 1.3862332217649138 1.325053888423466 1.1916342857382556 0.5461385780996638 1.2565730824590393 1.0 22.548369264184764 1.9676827952139992 9.838735796362371 0.8796965864040399 1.3396148741521623 0.5420232968818665 0.16651365848038494 0.3320653466393562 98.71055056004138 0.06523119686774066 0.0421808284929179 92.82881258088983 -1.9676827952139992 0.4599182877481224 YHRPEETHK ddPTM_BT-474_Trastuzumab_2h_R1 2 YHRPEETHK 9 1 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 ; 110.14 0.0014036 85322000.0 156096.0 177475.0 157756.0 156196.0 152022.0 159421.0 162410.0 39680.0 181636.0 94965.0 False True 155255.59647989608 183382.1480890972 179966.67356026682 175970.39758486315 171381.10059501164 148400.60150666782 154553.6078335501 42641.123090957335 136874.241597704 88904.252396373 1.7463236267675986 2.0626926513200012 2.024275202921664 1.979324867390057 1.927704198342749 1.669218260168645 1.7384276192378778 0.47962973582911483 1.5395691196801293 1.0 16.439964806078475 1.8971626212255754 6.478822591170343 0.9726577704371274 1.9020513739198714 0.6997109490999845 0.2631945062914889 0.12036646362151254 6.449459182807323 0.11044455805327166 0.06765173620522529 78.91555609770649 -1.8971626212255754 0.929393603482744 YHSDEYIK ddPTM_BT-474_Trastuzumab_2h_R1 5 YHSDEYIK 8 0 Q92769;Q92769-3;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 Q92769 HDAC2 Histone deacetylase 2 0 ;;;; 182.39 0.00022882 3983960000.0 3446860.0 3800740.0 3666180.0 3134490.0 2555580.0 3380910.0 3899570.0 1594246.0 5380970.0 3037540.0 False True 3428302.4887421443 3927245.333304149 4182346.2769921822 3531316.1126134982 2881017.9648906044 3147195.649506078 3710932.901295969 1713216.7319371572 4054902.0448038764 2843681.596631169 1.2055859181996886 1.38104256747895 1.470750551660528 1.2418113605956977 1.013129588173186 1.1067327837386838 1.3049748275939925 0.6024643314380759 1.4259339194682017 1.0 21.439328506617237 3.390707675176419 3.943458999174442 1.0426963824998299 1.356372463900721 0.2492116568299757 0.2130320025380882 0.2728831155993613 8.130079351131318 0.060350522637634914 0.0842219312878169 2458.7120811018617 -3.390707675176419 0.3136760814008912 YHSDFNR ddPTM_BT-474_Trastuzumab_2h_R1 1 YHSDFNR 7 0 Q15424;Q15424-3;Q15424-4;Q15424-2;K7EII0 Q15424 SAFB Scaffold attachment factor B1 0 92.187 0.015854 175000000.0 419690.0 504410.0 511930.0 530930.0 536370.0 532300.0 524740.0 477450.0 542520.0 549590.0 False True 417430.435671942 521198.98192771623 584005.2942246725 598145.6835625209 604673.5401859358 495503.3538994195 499356.3214985353 513079.74344197474 408823.2153955517 514514.6956723284 0.8113090630511066 1.0129914389454966 1.135060473756807 1.162543438688199 1.1752308442731547 0.9630499538053693 0.9705385010354557 0.9972110568611096 0.7945802497659136 1.0 18.972852758690767 2.518123923637804 21.915157482098607 0.9499296030349615 1.067014253877192 0.20868853196852744 0.11093749665261525 201.72300672109913 107816.44704480396 0.037664237283710995 0.035501280542511636 329.70377798879656 -2.518123923637804 0.11708465084223052 YHTINGHNAEVR ddPTM_BT-474_Trastuzumab_2h_R1 26 YHTINGHNAEVR 12 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;;;;;;;;;;;;;;;;;;;;;;;;; 286.09 9.903399999999999e-29 87246510300.0 10970127.21 12983119.999999998 12233239.53 12556134.339999998 11507619.870000003 12472003.3 11806372.299999999 1131066.1799999997 13139254.200000001 6209388.6 False True 10911065.26399707 13415255.300738208 13955573.32259985 14145739.660034532 12973047.04943772 11609843.067808814 11235252.967126954 1215472.0817892845 9901261.059395965 5813100.1034229575 1.8769787324963236 2.307762650231816 2.4007109931553248 2.4334244049410096 2.2316916651407284 1.997186159063824 1.9327472032541195 0.20909188903758458 1.7032669114997272 1.0 22.470876321772934 1.9155439269664003 6.488168928102801 0.9128677186097873 2.2118941116627067 0.6891435016086723 0.37185264389152545 0.12272610193378412 7.798362894895868 0.15577488853592894 0.09574892487357635 82.32731031442009 -1.9155439269664003 1.2990263930529193 YHTINGHNCEVK ddPTM_BT-474_Trastuzumab_2h_R1 2 YHTINGHNCEVK 12 0 P51991;P51991-2 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 205.96 5.532e-08 1574390000.0 1225660.0 1156870.0 958750.0 1009050.0 955730.0 1260770.0 1098690.0 109218.0 1462970.0 642350.0 False True 1219061.1827436287 1195375.7186073163 1093733.6663956107 1136795.6265397735 1077436.550444476 1173615.937433347 1045542.1672966148 117368.40175776638 1102440.6462936474 601354.6730564965 2.027191668017685 1.9878048216231492 1.8187830167453538 1.890391274024361 1.7916823444111696 1.9516202168484476 1.7386447867486472 0.1951733428148479 1.833261959519311 1.0 19.197856603703837 1.9302902989595494 10.084217114848613 0.9297819358681609 1.899276478019317 0.5355433635068898 0.3749625752600839 0.380637025498659 53.60609581498305 0.14629565469984426 0.09307957947642462 85.17071614493034 -1.9302902989595494 0.969494542151156 YHTLS(ph)LGR ddPTM_BT-474_Trastuzumab_2h_R1 4 YHTLSLGR 8 0 V9GZ20;V9GXZ5;Q70EL4-2;Q70EL4-3;Q70EL4-4;Q70EL4 V9GZ20 USP43 Ubiquitin carboxyl-terminal hydrolase 43 1 YHTLS(1)LGR;YHT(0.002)LS(0.998)LGR;YHTLS(1)LGR;YHTLS(1)LGR 79.809 0.01744 1402130000.0 529560.0 703690.0 575260.0 697440.0 668500.0 665640.0 612750.0 214891.0 589120.0 455713.0 True False 526708.9077996465 727111.896260412 656251.6077504446 785735.8324898664 753629.5124900686 619625.8735480169 583108.9415676867 230927.25761438799 443939.26980356005 426629.0061844714 1.2345829752886075 1.7043189415630446 1.538225479836891 1.8417309210103725 1.7664750909229185 1.4523763376747407 1.3667822232311004 0.5412835373751794 1.0405745117377316 1.0 18.702622531198006 1.9455386282475897 4.145375328939282 0.825724381700299 1.6026080858586713 0.7144472686746162 0.2050589021389709 0.10814016310953405 3.663066880417037 0.09448142715097606 0.05583597348476796 88.21422606382048 -1.9455386282475897 0.7768837041583723 YHTSQSGDEMTSLSEYVSR ddPTM_BT-474_Trastuzumab_2h_R1 22 YHTSQSGDEMTSLSEYVSR 19 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;;;;;;;;;;;;;;;;;; 352.41 8.247899999999999e-91 30268216200.0 2454623.3 5283026.0 5539286.0 6485023.0 6300882.0 5569563.0 5829661.0 1949520.0 4298706.0 4908564.0 False True 2441407.8808870874 5458868.326753347 6319169.320462968 7306026.2468756065 7103261.974446447 5184552.219151064 5547658.025962337 2095003.081861975 3239347.5060092695 4595295.243086938 0.5312842269623238 1.187925484214654 1.3751389162577505 1.5898926750934304 1.5457683562622966 1.128230493340029 1.2072473546303935 0.45590173667593004 0.7049269599994632 1.0 22.13172612551831 1.7559001423959972 24.9999999999911 0.6769796961975127 1.2509009391238768 0.3641823697901436 0.30167261689101893 6.494331571633099 9373.606785975422 0.14396875946407847 0.07983889913468563 57.00331891207854 -1.7559001423959972 0.573921242926364 YHTVNGHNCEVR ddPTM_BT-474_Trastuzumab_2h_R1 9 YHTVNGHNCEVR 12 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 0 ;;;;;;;; 249.75 3.1565e-17 37952839000.0 2778724.0 3320849.0 3001835.0 3082739.0 2748778.0 2985144.0 2798952.0 287910.2 3162913.0 1498388.0 False True 2763763.6587292613 3431381.4514693916 3424467.275582442 3473013.4413196496 3098818.5850163423 2778788.021553126 2663555.9987250213 309395.5211023726 2383455.4720128085 1402759.5950054936 1.9702332948351264 2.4461650190715347 2.441236037718231 2.4758436539555793 2.209087427417815 1.9809438705298918 1.8987972053148494 0.2205620422800679 1.699118994087846 1.0 20.419836350333558 1.9328586911396013 5.883931353562725 0.912480767644966 2.2548135434812555 0.702028943511779 0.37252857242992443 0.11136200350114991 7.291473432495822 0.1595569172755124 0.097616474908441 85.67590313246725 -1.9328586911396013 1.3423327758362895 YHVLVNLGK ddPTM_BT-474_Trastuzumab_2h_R1 2 YHVLVNLGK 9 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 141.39 0.00010683 1195950000.0 1860670.0 2114520.0 2117990.0 1693250.0 1692600.0 2147600.0 2274700.0 1057260.0 3204300.0 1885390.0 False True 1850652.3594598705 2184900.5199456653 2416184.582100897 1907615.2763871658 1908142.5771738046 1999141.466906619 2164664.070802146 1136158.109857497 2414643.200420199 1765062.7960364127 1.048490945260223 1.2378599361178715 1.3688944028091405 1.080763404379077 1.0810621477370033 1.1326177580740178 1.2263949337457396 0.6436927413624203 1.3680211298104918 1.0 20.75128808081991 YHYELLNYIDLPVLAIHGK ddPTM_BT-474_Trastuzumab_2h_R1 2 YHYELLNYIDLPVLAIHGK 19 0 Q9NVP1;H7C452 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 0 ; 194.92 1.1845e-15 122715000.0 198584.0 200196.0 192349.0 174267.0 194110.0 208635.0 197147.0 68650.0 250410.0 160091.0 False True 197514.8458087565 206859.40283896244 219430.06727252042 196329.184332002 218828.75791989113 194212.55352396282 187610.2464353236 73773.01159763667 188699.8108220894 149873.85531919936 1.3178739239615342 1.3802234045317379 1.4640983699603989 1.3099628611932528 1.4600862669064762 1.295840112408742 1.2517876852887637 0.49223402868042515 1.2590575615753599 1.0 17.1933892093499 1.946151490107616 9.584797785794196 0.8626413261520333 1.3687459854038417 0.541842964154478 0.184973851017212 0.33334819504419605 57.68790609079309 0.07309969890223923 0.04651516171946099 88.33879890762792 -1.946151490107616 0.5061046592518085 YHYLGGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YHYLGGR 7 0 Q8NCW5-2;Q8NCW5 Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase 0 88.59100000000002 0.03394 0.0 265230.0 235040.0 137100.0 173700.0 151210.0 246810.0 94224.0 80090.0 296940.0 178840.0 False True 263802.0311498235 242863.16431531994 156402.48830543752 195690.40219013795 170465.69720811266 229748.6056282465 89666.02514936554 86066.72248877943 223763.1157921462 167426.27808737266 1.5756309831611763 1.4505677787842837 0.9341573502805678 1.1688153402539083 1.0181537758317356 1.3722374304250524 0.535555267510472 0.5140574315572186 1.3364874280689305 1.0 17.353166455676526 6.045318824873067 0.41966294717488456 0.8366639350573754 3.683482910679628 0.3296957839094331 0.28232666380257404 16.187318429971732 0.9496663127081804 0.20583808077654792 28.964331870121143 1109989.3831899157 -6.045318824873067 2.8468189756222526 YIAIVSTTVETKEPEKEIRPALELLEPIEQK ddPTM_BT-474_Trastuzumab_2h_R1 1 YIAIVSTTVETKEPEKEIRPALELLEPIEQK 31 3 P50395;P50395-2 P50395 GDI2 Rab GDP dissociation inhibitor beta 0 37.344 0.087101 114090000.0 132330.0 104560.0 87377.0 98737.0 92904.0 162100.0 170150.0 133610.0 273120.0 160630.0 False True 131617.54998324526 108040.21639214517 99678.92210550111 111237.09407626725 104734.77371485002 150894.40854235578 161919.19446387887 143580.656657833 205813.23562049898 150378.45587773813 0.8752420631998907 0.7184554181084615 0.6628537414065673 0.7397142990130589 0.6964745920785508 1.0034310278131673 1.0767446275384267 0.9547953915324684 1.3686351174388363 1.0 17.198238367085942 2.63487921232851 3.7237569595050144 1.0771345710703237 0.7328479958700969 0.689002700226808 0.11571560597080793 0.14235963277919464 3.6034673289803565 0.038352428035689515 0.036051117279332606 431.39907775081485 -2.63487921232851 -0.3442865752002269 YIASTQRPDGTWR ddPTM_BT-474_Trastuzumab_2h_R1 3 YIASTQRPDGTWR 13 1 Q9BRP8-2;Q9BRP8 Q9BRP8-2 WIBG Partner of Y14 and mago 0 ;; 190.34 4.1007e-06 1658340000.0 871490.0 1165330.0 1060450.0 1113630.0 1040870.0 1080750.0 1120380.0 1026490.0 1140400.0 1085900.0 False True 866797.9946716409 1204117.3045931386 1209752.1424033646 1254615.4438169424 1173418.6247801597 1006040.2963118489 1066182.9391327691 1103091.896210604 859363.7005770975 1016596.9323142361 0.8526466755102391 1.1844589200677804 1.1900017636777829 1.2341326281212242 1.1542614260195792 0.9896157113337383 1.0487764670956194 1.0850828496004472 0.8453337534875259 1.0 19.955316351749122 2.739445823831655 24.98562377258624 1.010683229154052 1.1363943114470114 0.23244266145749404 0.11421625135088355 126.27704769784873 3564300.1223941296 0.03597588548448982 0.03621909831032745 548.8400861495481 -2.739445823831655 0.12571108229295946 YIDENQDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YIDENQDR 8 0 Q96KP4;Q96KP4-2;J3QKT2;A0A087WYZ1;J3KSV5;J3QRA8;J3QRD0;J3QKQ0;J3QLU1;J3QR27;J3QL02;J3QQN6;J3KSS4;J3QRP4 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase 0 ;;; 215.27 1.9662e-05 3771880000.0 1386340.0 1827480.0 1620520.0 1720440.0 1641810.0 1707960.0 1674350.0 1480760.0 1823530.0 1697330.0 False True 1378876.0994768543 1888306.567065013 1848675.1301876553 1938247.5275993126 1850884.7717297224 1589892.7453053766 1593355.2938618623 1591261.8303469238 1374145.465550117 1589004.9462426784 0.8677607346266042 1.1883578912262394 1.1634168506265425 1.2197869693121122 1.164807432542157 1.0005587138446594 1.0027377810430802 1.0014203128250683 0.8647836300317296 1.0 20.599692184827898 2.6449789313510235 4.681427139530771 0.9757867095496088 1.1321966072794998 0.3555365383606873 0.09864769013022674 0.2510513766054155 9.295700847274048 0.03249183562395585 0.03060840254917251 441.5490262497004 -2.6449789313510235 0.156409897729891 YIDQEELNK ddPTM_BT-474_Trastuzumab_2h_R1 8 YIDQEELNK 9 0 P08238;P07900;P07900-2;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 ;;;;;;; 217.64 1.2997999999999998e-06 13206240000.0 14286910.0 12813370.0 11872140.0 10939020.0 10955190.0 13719970.0 14625740.0 13015300.0 18777560.0 13730230.0 False True 14209990.863984928 13239855.274604281 13543634.117509216 12323898.810396995 12350268.510001596 12771540.767235424 13918237.080447454 13986567.776354264 14150081.9444129 12853954.966358706 1.105495616032204 1.0300219122640115 1.0536550153595166 0.9587631855449182 0.9608146708405814 0.9935884170016951 1.0827980272899804 1.0881139550402834 1.1008348777824732 1.0 23.6157089872468 2.2302976738957003 24.956090541561938 1.0769231905913728 1.014103237150002 0.20144220994306805 0.048106195865501813 246.25964798318472 743757.7326190822 0.01856181632077616 0.013944926296378599 169.9408060742589 -2.2302976738957003 -0.0628199534413707 YIDTEHGGSQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 YIDTEHGGSQAR 12 0 F5H365;Q15436;Q15436-2 F5H365 SEC23A Protein transport protein Sec23A 0 ;;; 190.78 6.2008e-06 2644330000.0 2387220.0 2989980.0 2837820.0 2857060.0 2985290.0 2892020.0 2813360.0 2496710.0 2975540.0 2952860.0 False True 2374367.4727650736 3089499.676818922 3237360.3892263765 3218763.5030590417 3365448.986299891 2692101.464482808 2677267.028721117 2683027.178236495 2242258.037193246 2764405.946729364 0.8589069472861776 1.1175998519588575 1.1710871889335126 1.1643599258159747 1.2174221337794602 0.973844477388677 0.9684782482430473 0.9705619326318009 0.8111174988051651 1.0 21.39853805709448 2.5778942942110565 6.445376729412963 0.9437051202576071 1.1130921951214836 0.38699037383845414 0.10181208968762778 0.25754792715141633 14.007082658112532 0.03374396853379813 0.03167762647405989 378.35048429748673 -2.5778942942110565 0.1693870748638765 YIEIDS(ph)DEEPR ddPTM_BT-474_Trastuzumab_2h_R1 4 YIEIDSDEEPR 11 0 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR 281.24 2.2594e-27 3949100000.0 3878340.0 4341470.0 3831610.0 3715690.0 3525600.0 3865490.0 3633620.0 3552690.0 4105570.0 3769250.0 True False 3857459.44836408 4485973.204475963 4371067.383048852 4186095.9730217205 3974564.2621316137 3598277.7746846997 3457847.918823628 3817809.7679942804 3093807.2853194606 3528693.237982722 1.0931693939395273 1.2712845526466043 1.2387212739262359 1.1863020361086478 1.1263558473571895 1.0197196333058858 0.9799230722590115 1.0819330303069474 0.8767572233306752 1.0 21.75070258621502 2.9129174987288793 1.9161199726954414 0.998644124556544 1.2081333386381554 0.702008672015245 0.06371099314257411 0.18899936889486377 1.38430292245645 0.02198646038137988 0.02440264925380429 818.3093222586784 -2.9129174987288793 0.20948921408161136 YIEIDS(ph)DEEPRGELLSLR ddPTM_BT-474_Trastuzumab_2h_R1 6 YIEIDSDEEPRGELLSLR 18 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR 264.64 3.3749000000000003e-31 6673140000.0 1069150.0 1265580.0 1199830.0 1252650.0 1187150.0 1276640.0 1268470.0 1200510.0 1479860.0 1362050.0 True False 1063393.8151937332 1307704.0652407338 1368755.6348906856 1411235.3615629016 1338326.5157106735 1188388.8816873105 1207109.2600740304 1290098.152266258 1115168.3321080536 1275122.8028903257 0.8339540417466729 1.0255514702400084 1.0734304427684314 1.1067446667599772 1.0495667653947398 0.9319799465538416 0.9466611822311319 1.011744240901337 0.8745575952216503 1.0 20.282204764321573 2.739970802627483 24.968759778682013 0.9580100703148673 1.0263038193391831 0.1460814119435151 0.07658525555147475 248.30194656675803 4396454.381034503 0.024614114339965472 0.024841148166736264 549.5039297772028 -2.739970802627483 0.06829374902431584 YIEIFK ddPTM_BT-474_Trastuzumab_2h_R1 1 YIEIFK 6 0 P31943;G8JLB6;E9PCY7;H0YB39;D6RBM0;E7EN40;E5RGV0;P55795 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 0 106.84 0.073935 737290000.0 985450.0 917870.0 642060.0 748710.0 655570.0 951210.0 581230.0 676790.0 1067700.0 864920.0 False True 980144.4466937884 948420.748085868 732456.4671144357 843496.6092330345 739052.9536321829 885455.0916074901 553113.6843857797 727295.5064699852 804579.6414470064 809720.0651047323 1.2104732103520404 1.1712946102715085 0.9045798649187445 1.0417138534462937 0.9127264908973091 1.093532357374597 0.6830924763044347 0.8982061058051143 0.9936516039564105 1.0 19.627063702819125 4.96810298448903 0.6804619778325186 0.9077460982760361 1.5404590037169343 0.412792432909347 0.11127388673925205 3.6146071837975278 1.0214909006003754 0.044524904856567134 1.8947878561512077 92918.66992098394 -4.96810298448903 0.6327129054408982 YIEIYVQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YIEIYVQK 8 0 A0A087WVQ6;Q00610-2;Q00610;P53675;P53675-2;A0A087WX41 A0A087WVQ6;P53675 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 ; 143.85 0.0013838 315870000.0 463860.0 456560.0 534060.0 471420.0 492610.0 580360.0 511180.0 523870.0 627600.0 622930.0 False True 461362.62929969095 471756.32360365236 609251.0058672634 531101.7236642184 555340.9635717765 540241.079220491 486452.27050276595 562963.8395579585 472936.38940914255 583174.0740827961 0.7911233537350102 0.8089459812588904 1.0447155196764886 0.910708735636995 0.9522730660570004 0.9263804809398819 0.8341459130669481 0.9653444221493834 0.8109695036648653 1.0 19.153567058258766 4.436832018650274 23.41545069627641 0.9262882036180264 0.7955789445982749 0.38405674149782054 0.06611372345705889 63.314444411936066 36797.09516570505 0.015038887438578659 0.04118591475616397 27342.109526006312 -4.436832018650274 -0.1307092590197515 YIELFR ddPTM_BT-474_Trastuzumab_2h_R1 11 YIELFR 6 0 Q6NXG1;Q6NXG1-2;Q6NXG1-4;Q6NXG1-3;A0A2U3TZN9;Q6NXG1-5;H0YBR2;H0YBB3;Q9H6T0-2;Q9H6T0 Q6NXG1;Q9H6T0-2 ESRP1;ESRP2 Epithelial splicing regulatory protein 1;Epithelial splicing regulatory protein 2 0 ;;;;;;;;;; 158.08 0.022184 5665196000.0 5214279.0 5735172.0 3759708.0 4583933.0 4215492.0 5154293.0 3089183.0 3856335.0 5828908.0 4863449.0 False True 5186205.901224853 5926063.733035319 4289042.206432233 5164258.447798755 4752309.919021372 4797988.856810628 2939747.4164649365 4144114.299772355 4392451.726765568 4553059.521011828 1.1390595438717919 1.3015563942635142 0.9420132081820615 1.134239169061225 1.0437618698130402 1.0537944506695949 0.6456641743641505 0.910182324796713 0.9647253031714006 1.0 22.1184048887971 2.4554817363399892 24.964921939611724 0.8662162739281153 1.1078628102944192 0.44721743576235873 0.12205717123812312 201.25038284577678 232175.7377388547 0.041878219066933384 0.035040226040920365 285.41824825249853 -2.4554817363399892 0.24164653636630395 YIELLTR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIELLTR 7 0 P15924;P15924-3;P15924-2 P15924 DSP Desmoplakin 0 85.064 0.049054 201210000.0 249310.0 295130.0 277160.0 281380.0 285110.0 314080.0 306310.0 277950.0 349040.0 314210.0 False True 247967.7426609447 304953.22364014736 316181.7188820933 317002.67914945877 321417.0685206331 292368.3888647936 291492.6150821674 298692.0404015014 263023.76889637834 294156.8487912852 0.842977967978188 1.0367027825230837 1.0748745785838751 1.0776654715062695 1.0926723951570818 0.9939200466219279 0.9909428125842884 1.0154175965266548 0.8941616351180153 1.0 18.16622610104056 -0.6332219500656093 7.65768543831381 1.0000000066068404 1.0099666484542515 0.0 0.07635205600136928 0.0 0.0 0.07297241017929415 0.017199762025768388 0.23269017698538183 0.6332219500656093 0.00996664184741114 YIEVFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YIEVFK 6 0 P52597;A0A1B0GW42 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed 0 ; 118.03 0.051687 1418350000.0 3269000.0 3021700.0 2166010.0 2415300.0 2199400.0 3051500.0 2190300.0 2476500.0 3607000.0 2994300.0 False True 3251400.0672200415 3122275.4578437796 2470965.3807035773 2721076.732353709 2479480.5531348656 2840556.9874583506 2084346.821241458 2661309.0054121916 2718103.1813237383 2803201.2104507955 1.159888221758141 1.1138249534865434 0.8814798493563044 0.9707033238317275 0.8845175094427592 1.0133261133265377 0.743559475313677 0.9493820834160579 0.9696425540878773 1.0 21.418643872346426 4.3025013031631 5.492197278757683 0.9198836442631716 1.14547306450472 0.5600761812276165 0.0745536628771199 0.12622648197645708 7.216327451000284 0.017308851957191222 0.0485898051706802 20067.87111662717 -4.3025013031631 0.22558942024154838 YIGENLQLLVDRPDGTYCFR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIGENLQLLVDRPDGTYCFR 20 1 Q9Y221;J3QLW7;Q9Y221-2 Q9Y221 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog 0 155.86 2.2799e-08 587000000.0 443340.0 417930.0 356810.0 363230.0 312720.0 433630.0 438290.0 290230.0 543960.0 411680.0 False True 440953.10669970495 431840.54740598006 407045.7465518824 409214.88075718883 352543.0383633423 403654.17875522276 417088.2382696063 311888.43635807803 409908.3466905625 385406.22994301957 1.1441255289643286 1.1204814916194417 1.0561472932392975 1.0617754695290973 0.9147310317621593 1.0473473114715894 1.0822041935629083 0.8092459647167334 1.0635747812150453 1.0 18.556020366867685 4.122914799268409 0.6842491341012121 0.9662978621402377 1.194033566020585 0.32567407295194384 0.0778936796370797 1.7127097821484252 1.0289493847668696 0.037016057149213855 0.2695008238958886 13271.34072459492 -4.122914799268409 0.22773570388034725 YIGTGHADTTK ddPTM_BT-474_Trastuzumab_2h_R1 3 YIGTGHADTTK 11 0 Q9BWJ5 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 0 ;; 202.56 3.9611e-08 969470000.0 3167460.0 3077550.0 2968040.0 2779000.0 2575190.0 3269090.0 3339200.0 3127120.0 4177790.0 3248860.0 False True 3150406.7472978905 3179984.3913317374 3385914.2333338466 3130821.1150627085 2903125.1821530266 3043105.5029101097 3177670.139017246 3360481.573593613 3148229.634017878 3041514.9733110177 1.0358018207841773 1.045526462712094 1.1132328011023773 1.0293623876704021 0.9544997172881451 1.0005229399207463 1.0447655746892506 1.1048709617021435 1.0350860218158617 1.0 21.536358675907387 -0.24749957941220657 6.876379963899892 0.9999993661317115 1.043429892729798 0.06896391649133482 0.0432769172766401 0.0 0.0 0.046245268268123564 0.010900114263393748 0.5655883048267648 0.24749957941220657 0.04343052659808655 YIGTGHADTTKWEWLVNQHR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIGTGHADTTKWEWLVNQHR 20 1 Q9BWJ5 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 0 237.21 8.795399999999998e-30 455840000.0 297440.0 552650.0 489650.0 596600.0 524850.0 553130.0 547770.0 465780.0 728770.0 611340.0 False True 295838.6160886906 571044.6211660204 558588.4638859036 672129.4988292236 591686.5364703255 514893.4250279649 521272.27241539216 500538.8687829151 549174.3985176885 572323.7578054937 0.5169078027147572 0.9977650121595896 0.9760008321648984 1.174386856499585 1.0338318624742682 0.89965411710718 0.9107996397251579 0.8745729352598798 0.9595519861405569 1.0 19.126471970467072 4.740383974542541 24.782614893452674 0.974005747459265 0.516907628151394 0.7494430845406066 0.08037096237363041 80.20613834657667 1090044.355298963 0.02186447246212668 0.1409636714245736 55002.69565097748 -4.740383974542541 -0.45709811930787103 YIHILGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YIHILGR 7 0 Q9Y2J8;Q9Y2J8-2 Q9Y2J8 PADI2 Protein-arginine deiminase type-2 0 ; 166.66 0.0011152999999999998 1191460000.0 1439650.0 1668570.0 1558040.0 1633490.0 1478420.0 1605380.0 1582820.0 1359700.0 1747520.0 1601320.0 False True 1431899.0843601504 1724107.3437781353 1777398.4892735507 1840289.666514498 1666688.0237181268 1494403.8592580312 1506252.9496404151 1461167.7184166997 1316867.1115682994 1499122.3866409743 0.9551582293214574 1.1500777782668405 1.1856260069973998 1.2275780035797905 1.1117758220211829 0.9968524735371902 1.0047564915733251 0.9746820749509864 0.8784253529286242 1.0 20.515686737394777 2.7067369341840255 2.930923623368588 0.9679041181108788 1.1388197133773146 0.5271934938780649 0.07380668506568984 0.21486470853316583 3.7117467083407414 0.025935289356867845 0.025362249130460382 509.0224467627656 -2.7067369341840255 0.17091559526643574 YIHLENLLAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YIHLENLLAR 10 0 Q2TAY7 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed 0 ; 201.33 2.4384e-07 1976380000.0 1095560.0 1374930.0 1327030.0 1316720.0 1157470.0 1235860.0 1220020.0 996840.0 1442750.0 1314640.0 False True 1089661.6266881581 1420693.7138872633 1513864.289248464 1483416.6169936564 1304866.9436378167 1150427.907101516 1161002.9716710062 1071229.2626509538 1087203.5943595292 1230738.54968007 0.8853721425817167 1.1543424184255642 1.2300453980595574 1.2053060476404756 1.0602308215477743 0.9347459762275011 0.9433384303862168 0.870395473457315 0.883374941527709 1.0 20.231092886677477 2.8178042857560386 2.9420360879846608 0.9130930749014032 1.1296114606301555 0.4844201601337923 0.09382263520297175 0.2147229500591724 3.6357654139784064 0.03158586779805355 0.033124176266904434 657.3615314755002 -2.8178042857560386 0.21651838572875226 YIHPDDELVLEDELQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIHPDDELVLEDELQR 16 0 C9IZD2;C9J8Z7;C9JLE1;F8W8R3;A0A087WWF6;P49005 C9IZD2 POLD2 DNA polymerase delta subunit 2 0 68.845 0.047864 717430000.0 497440.0 508240.0 491990.0 461110.0 404160.0 457450.0 555840.0 389970.0 734100.0 412900.0 False True 494761.83831077913 525156.4611624321 561257.9155462598 519486.4787213263 455627.3803559996 425827.5582214717 528951.8956849978 419071.5416275358 553190.8914360286 386548.3684985251 1.2799480702313892 1.358578910065781 1.4519733137831141 1.343910674721444 1.1787072912137722 1.10161519986624 1.3683976929966424 1.084137395936609 1.4311039355431643 1.0 18.560289423197425 3.2876166195026935 5.770811392915633 1.1979772352607752 1.3674249724864367 0.2881264590954925 0.12663164515780784 0.23806885736166628 17.718337642867 0.03318819491026134 0.044546788680263266 1939.1732851275651 -3.2876166195026935 0.16944773722566153 YIHSADIIHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YIHSADIIHR 10 0 Q16539-2;Q16539;B4E0K5;Q16539-5;Q16539-3;Q16539-4;E7EX54;B5TY33 Q16539-2 MAPK14 Mitogen-activated protein kinase 14 0 ; 159.4 4.4492000000000005e-06 478720000.0 426870.0 500960.0 498930.0 525230.0 514370.0 522690.0 506590.0 315270.0 559450.0 486770.0 False True 424571.77934971557 517634.1507632857 569175.0072226981 591724.064146955 579871.9705901515 486557.67057991226 482084.30633826857 338797.0483086219 421581.0437459293 455703.9218552365 0.9316834000928114 1.1359001446727126 1.2490017748925757 1.2984835893840037 1.272475269094479 1.067705690570021 1.0578893075478344 0.7434587065420244 0.9251205081352207 1.0 18.79773726109793 2.1041613891373308 2.425325675468559 0.8674501355399857 1.179404061029829 0.4951560213592201 0.11918063569079552 0.2188303206289003 2.528077443000161 0.059985150307018995 0.03667675116057482 127.10463538159682 -2.1041613891373308 0.31195392548984335 YIHSANVLHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YIHSANVLHR 10 0 P28482;P28482-2;K7EN18;P27361;E9PBK7;E9PQW4;P27361-3;P27361-2;E9PJF0;B3KR49;H0YDH9;K7ELV1;P31152;Q16659 P28482;P27361;K7ELV1;Q16659 MAPK1;MAPK4;MAPK3;MAPK6 Mitogen-activated protein kinase 1;Mitogen-activated protein kinase 3;Mitogen-activated protein kinase;Mitogen-activated protein kinase 4;Mitogen-activated protein kinase 6 0 ; 158.79 4.5576e-06 593030000.0 507630.0 606110.0 594630.0 591480.0 533500.0 574770.0 621170.0 434460.0 746180.0 592650.0 False True 504896.97648299555 626284.0049487676 678348.735383387 666361.3073541886 601438.0626977584 535037.5027630456 591121.6340001631 466881.61134317867 562293.9372997353 554826.5696068078 0.9100086480011292 1.1287923817213728 1.2226320305174216 1.2010263095843137 1.0840109245741116 0.9643328781860858 1.0654169543810361 0.8414910837345919 1.0134589223047112 1.0 19.081677351720074 2.810733809052673 3.4340161207039643 0.9628268966354302 1.126010746243611 0.31985629674888183 0.09546236780552189 0.2677516093848248 6.1899500905692335 0.03177941878413939 0.0332934047115897 646.7460859021339 -2.810733809052673 0.1631838496081809 YIIEELNVR ddPTM_BT-474_Trastuzumab_2h_R1 3 YIIEELNVR 9 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS Isoleucine--tRNA ligase, cytoplasmic 0 ;; 133.23 0.00065763 229048000.0 214722.0 283872.0 252897.0 251658.0 239469.0 246751.0 246206.0 215526.0 285614.0 263413.0 False True 213565.96060985673 293320.50791575236 288502.6993798705 283517.8769969237 269963.9577060348 229693.68415937584 234296.07518174427 231609.64453885242 215228.2567315216 246601.75682078442 0.8660358440392777 1.1894501957215187 1.1699133984253698 1.1496993397454494 1.0947365549476953 0.9314357169251785 0.9500989701059462 0.9392051683848004 0.8727766562017512 1.0 17.911823552148388 2.7561181979347458 5.872179874164587 0.9359641657542741 1.1073735856500555 0.42887024320038947 0.08893830917561055 0.1519935179501175 20.059400947337508 0.027274439599702695 0.027956741600446103 570.3194697650652 -2.7561181979347458 0.1714094198957814 YIKNPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YIKNPR 6 1 P49368;P49368-2;B4DUR8;Q5SZX6 P49368 CCT3 T-complex protein 1 subunit gamma 0 ; 110.56 0.026082 1983850000.0 2132030.0 2776500.0 2678800.0 2488160.0 2498960.0 2433070.0 2740900.0 2476400.0 3551300.0 2852000.0 False True 2120551.3873707997 2868914.124070306 3055951.7554529966 2803160.80088321 2817187.7435036385 2264877.5977307195 2608312.195745198 2661201.5429043993 2676129.69998198 2669982.9182799533 0.7942190838946991 1.0745065462510552 1.144558541753402 1.0498796758928526 1.0551332460653033 0.8482741901546661 0.9769022033390069 0.9967110743235724 1.002302180160009 1.0 21.348399081352497 YILPDEPAIIVHPNWAAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YILPDEPAIIVHPNWAAK 18 0 Q8IX12-2;Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;H0YFJ7 Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 159.81 4.2127e-11 470640000.0 1619800.0 1721200.0 1643300.0 1763100.0 1579600.0 1743300.0 1697500.0 1735800.0 2108200.0 1860800.0 False True 1611079.1767767 1778489.1015126293 1874662.3561803438 1986308.2792252833 1780752.6969772822 1622789.774286791 1615385.4399202752 1865334.210213802 1588662.3584326867 1742042.15088897 0.9248221553965046 1.0209219682801938 1.076129159804599 1.1402182652191646 1.0222213601826788 0.9315444941780978 0.9272941180533081 1.0707744409410047 0.9119540291387249 1.0 20.732348101494466 2.9893106205723927 24.799801302711323 0.9773172136493754 1.0466103318996998 0.2095155466189157 0.06576064043370226 807.1411588064041 1872607.964363588 0.02054873934214696 0.023124014211816996 975.6872292876238 -2.9893106205723927 0.06929311825032436 YIMIFR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIMIFR 6 0 P55060-3;P55060;P55060-4 P55060-3 CSE1L Exportin-2 0 100.04 0.088668 44820000.0 99181.0 119590.0 85624.0 74209.0 62407.0 94121.0 71323.0 71178.0 156520.0 86946.0 False True 98647.02051604498 123570.48085631849 97679.1149428504 83603.85179117975 70354.16153473091 87614.63680700223 67872.8340096811 76489.6637945605 117947.74326054667 81397.03184178426 1.2119240503485489 1.5181202319085665 1.2000328848933273 1.0271117987899732 0.8643332556828612 1.076386138714535 0.833849004981031 0.9397107248730829 1.4490423126215213 1.0 16.312688566851634 3.917553765533166 3.3356318851721203 1.0046327193973679 1.3662100653293845 0.37005031103432384 0.17491440450069545 0.22509379454207423 4.786764677886648 0.04503995904207477 0.09291979316129848 8270.918959711884 -3.917553765533166 0.3615773459320166 YINTEHGGSQAR ddPTM_BT-474_Trastuzumab_2h_R1 4 YINTEHGGSQAR 12 0 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 SEC23B Protein transport protein Sec23B 0 ;;; 164.68 5.6635e-05 2862110000.0 1356240.0 1602930.0 1477270.0 1474190.0 1604870.0 1537760.0 1451690.0 1293230.0 1751340.0 1582550.0 False True 1348938.154532431 1656282.5560583526 1685256.7753389748 1660822.302847894 1809240.681690256 1431458.270697673 1381466.2087056632 1389737.389488879 1319745.7237536788 1481550.3041107783 0.9104909572017936 1.1179387911856615 1.137495480688697 1.1210029779209651 1.2211807298545672 0.9661894481246317 0.9324463738238135 0.9380291615025483 0.8907869817797284 1.0 20.498676181285923 2.5697774041477577 7.324187844326956 0.9370161989639942 1.1053518664501727 0.5098075769437864 0.0767967119134408 0.2131566501261421 14.751838902654473 0.024860674215837184 0.02337131873078321 371.3448490355137 -2.5697774041477577 0.16833566748617845 YIPPHLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIPPHLR 7 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;A0A2R8Y770;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;O15523-2;O15523;O15523-3;C9J8G5;C9J081 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 88.734 0.01839 132160000.0 185090.0 247880.0 242220.0 258260.0 233000.0 217510.0 218590.0 191590.0 223560.0 234700.0 False True 184093.49600543221 256130.53595337548 276322.470586018 290955.68952000554 262671.1689008019 202474.04566346577 208015.96660510893 205887.4186743074 168466.63355052256 219721.24506322065 0.8378502313349935 1.1657067384616302 1.2576047004763304 1.3242037174706913 1.195474606132071 0.9215041795580927 0.9467266879234015 0.9370391953452984 0.7667289228315153 1.0 17.745314846544417 2.7341267651387433 22.90257313728081 0.9154824580664861 1.1716686300518924 0.4552164919766979 0.13169546084717323 107.71043485585419 556363.3043445635 0.04323078260081741 0.04214174646671062 542.1591167877309 -2.7341267651387433 0.2561861719854063 YIQDIYSCGEIVEHLEESTAFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YIQDIYSCGEIVEHLEESTAFR 22 0 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 0 ; 174.01 3.1096e-12 56992000.0 64597.0 76532.0 71332.0 76873.0 71903.0 72314.0 85128.0 65872.0 78604.0 74972.0 False True 64249.216929401424 79079.32135542909 81374.92557114112 86605.11391803365 81059.42084752934 67315.10338884579 81010.03341945977 70787.70313123845 59233.09743963707 70187.2227732415 0.9153976235386263 1.1266911302491034 1.1593979980379687 1.2339156686372177 1.1549028105786914 0.959079170382979 1.154199157889239 1.0085554084386121 0.843929921988869 1.0 16.098920798691047 1.512563986486278 4.459154978989192 0.9212072654694503 1.1049272388035265 0.35204716850248985 0.09735933487181533 0.18033923421516596 7.8148001704775965 0.06093801102309987 0.025320177270822655 32.550973872432024 -1.512563986486278 0.1837199733340762 YIQELWR ddPTM_BT-474_Trastuzumab_2h_R1 4 YIQELWR 7 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 ;;; 143.11 0.0056859 5072920000.0 3486210.0 4043840.0 3587960.0 3437220.0 2428957.0 3080203.0 2938623.0 2611386.0 5173460.0 3410640.0 False True 3467440.632714345 4178436.7698471 4093113.580892616 3872371.6995738954 2738270.276393924 2867275.816627943 2796470.5788599905 2806260.8836694225 3898530.10381234 3192970.0352041917 1.0859609061419209 1.3086363867426296 1.2819141851517124 1.212780469869413 0.8575934776095732 0.8979964688095107 0.8758211157722797 0.8788873220634409 1.2209729690003268 1.0 21.606467583157592 3.261660861324999 13.132154254019014 0.9364956386251527 1.232820143708813 0.5651587983512639 0.11392775058547 0.7962046775389638 450.7741981119508 0.03132352815562699 0.04209658156790721 1826.6732178633488 -3.261660861324999 0.29632450508366037 YIQHTYR ddPTM_BT-474_Trastuzumab_2h_R1 6 YIQHTYR 7 0 P52565;J3KTF8;J3QQX2;J3KRY1;P52565-2 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ;;;;; 157.58 0.0018154 4439130000.0 2508140.0 3212210.0 3431800.0 2846190.0 2027760.0 2464480.0 2759510.0 2113040.0 4034560.0 2537420.0 False True 2494636.4529205523 3319126.468028049 3914967.6102596684 3206517.362173568 2285983.2165248506 2294116.298361901 2626021.9589480953 2270725.7745997077 3040296.748334212 2375479.683205441 1.050161140319383 1.3972447297672794 1.648074550137538 1.3498399438410416 0.9623248865004709 0.9657486505067687 1.1054701825126012 0.9559019976696328 1.2798664496392054 1.0 21.17978743716992 3.2848869392612414 7.10845371208525 1.0374788230675358 1.3868080863364385 0.4729639379778977 0.16276977536638942 0.17229647346069468 20.84282965024474 0.04552846227343464 0.061259813513362855 1927.0231821409955 -3.2848869392612414 0.3493292632689027 YIQPWESEFIDSQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YIQPWESEFIDSQR 14 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 92.781 0.011219 535200000.0 614070.0 523480.0 541670.0 495930.0 488520.0 613160.0 619490.0 597310.0 805750.0 598940.0 False True 610763.9153495905 540903.715349657 617932.4277199585 558714.6871511518 550730.1263151056 570773.6924233862 589522.9020183865 641884.3052787222 607183.7089968406 560715.1364216682 1.0892588333664754 0.9646675829041421 1.1020434220189514 0.9964323251851507 0.9821923656809334 1.017938798773846 1.0513768288485337 1.1447600815184937 1.082873761660372 1.0 19.096908490104653 1.9820510103295266 9.947753393329487 1.0935209491589153 1.0238156543231096 0.13129589316708024 0.052823174712127885 0.4931781323512771 262.6954092360238 0.020219454421708433 0.013495491335249295 95.95133251342361 -1.9820510103295266 -0.06970529483580568 YIQQTKPLTLER ddPTM_BT-474_Trastuzumab_2h_R1 2 YIQQTKPLTLER 12 1 O43809 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 ; 190.37 6.1439e-06 3470600000.0 1483550.0 1980010.0 1779290.0 1737880.0 1469380.0 1868070.0 2018310.0 1622730.0 2833760.0 1996590.0 False True 1475562.7316379014 2045913.4359086799 2029798.566134075 1957895.4298111515 1656496.8333024043 1738934.7178637774 1920676.6346070608 1743826.3526559763 2135417.8184385784 1869165.916833303 0.7894230888490441 1.0945595666407284 1.0859381437753328 1.047470110694171 0.886222468740925 0.9303265709070064 1.0275581302386607 0.9329435856664485 1.142444230984242 1.0 20.833963205164093 1.247909716557576 24.995739592651205 1.071222135562618 0.9802685784661184 0.13926520477221294 0.09546023734442208 355.9937259673955 951801.4757322745 0.06457605827680367 0.02286633882759575 17.697410169163735 -1.247909716557576 -0.09095355709649955 YISENES(ph)PRPSQK ddPTM_BT-474_Trastuzumab_2h_R1 1 YISENESPRPSQK 13 1 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 YISENES(1)PRPSQK 95.662 0.0027818 385670000.0 144690.0 112820.0 93296.0 85951.0 76358.0 143620.0 130550.0 116100.0 160660.0 153430.0 True False 143911.00511657013 116575.14549886993 106431.26585663087 96832.38778724539 86081.73869067566 133691.88744511476 124234.79775056941 124763.97154385429 121067.49573370445 143637.96604196815 1.0019008837435237 0.8115900601433537 0.7409689011158357 0.6741420145071735 0.5992965583035637 0.9307559214953841 0.8649161581296027 0.8686002383757004 0.8428655672994627 1.0 17.1320776036886 2.6759588089818407 24.999814177947542 0.888349408389204 0.7616868295010882 0.2876863954770993 0.10579662591263722 329.79720428727506 131702.7481763465 0.03579787746081954 0.0337505683991157 474.1970075212067 -2.6759588089818407 -0.12666257888811572 YISKPENLK ddPTM_BT-474_Trastuzumab_2h_R1 2 YISKPENLK 9 1 Q9H9S4;Q5TAW7;B7ZBJ4;Q9Y376;A0A087X0K1 Q9H9S4;Q9Y376 CAB39L;CAB39 Calcium-binding protein 39-like;Calcium-binding protein 39 0 ; 102.52 0.0032565 533500000.0 1044590.0 1007880.0 977120.0 868010.0 844420.0 1091090.0 1176640.0 1047760.0 1652650.0 1216820.0 False True 1038966.0435048586 1041426.6765236738 1114690.0027207064 977899.9770009286 951951.8817305361 1015665.5164495923 1119721.4279986972 1125949.1716174746 1245376.5518754295 1139161.5058279852 0.9120445504781161 0.914204589248937 0.9785179687146363 0.8584383970121553 0.8356601560536597 0.8915904472310698 0.982934748295275 0.9884017023548322 1.0932396727804132 1.0 20.119540870487107 1.895443084892591 1.8517483539524422 1.037210594850349 0.8987629965250177 0.6377826203320566 0.044135712682483536 0.22958497500453184 1.4692949443184555 0.030031390836432 0.013937300531040628 78.60371727503212 -1.895443084892591 -0.13844759832533127 YISPDQLADLYK ddPTM_BT-474_Trastuzumab_2h_R1 1 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 192.3 0.00025845 0.0 763000.0 662560.0 548140.0 539910.0 486700.0 701110.0 627160.0 581160.0 893250.0 668550.0 False True 758892.0927772684 684612.9090740215 625313.3474817098 608262.5506417801 548678.3601030913 652643.9159354157 596821.874816141 624529.110270684 673120.5064367703 625882.5666255478 1.2125151477997587 1.0938360414240629 0.9990905336333188 0.9718477284344791 0.8766474565049739 1.0427577803519148 0.9535684593899334 0.9978375234795865 1.075474126186173 1.0 19.255532466355056 4.5371594819465235 1.9910700024615315 0.9842734210970835 1.2339201276585192 0.6651638644851771 0.05000009968287707 0.28282126371879446 1.6415192955603068 0.012918968213690261 0.1108612937065886 34447.640642491664 -4.5371594819465235 0.24964670656143573 YISQEEGPLS(ph)PFLGQLDEDYR ddPTM_BT-474_Trastuzumab_2h_R1 1 YISQEEGPLSPFLGQLDEDYR 21 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 YIS(0.005)QEEGPLS(0.995)PFLGQLDEDYR 77.51 0.0063274 28986000.0 25942.0 33133.0 31105.0 31922.0 33914.0 36237.0 34548.0 30842.0 36417.0 39332.0 True False 25802.331154427153 34235.81187567856 35484.31363049329 35963.321926963625 38232.74687597335 33732.02148272262 32876.78125382364 33143.586652502636 27442.518312799148 36821.798086180665 0.7007352300948836 0.9297702354336511 0.9636768293455682 0.9766856535031833 1.0383183022863358 0.9160883834019599 0.8928619177389493 0.9001077724376944 0.7452791481983171 1.0 15.16827245780374 -0.1989314370600777 7.20341729764685 0.9999999976061834 0.9056853371105853 0.08589743331501665 0.09726978381760373 12669610.923428627 1758833.4167662107 0.09350430861975115 0.02267812600299811 0.6325116993835632 0.1989314370600777 -0.09431466049559811 YISSQIERPIR ddPTM_BT-474_Trastuzumab_2h_R1 3 YISSQIERPIR 11 1 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ;; 265.0 5.9498e-21 1082820000.0 858300.0 913020.0 886090.0 931550.0 875080.0 1014320.0 938940.0 863660.0 1188440.0 960150.0 False True 853679.0081660945 943409.3187677539 1010843.7699676506 1049484.1344860261 986516.2509944792 944202.4458524509 893519.8851008795 928110.6947766173 895564.8862801174 898872.4049742288 0.9497221223412349 1.0495475370553866 1.1245686978193887 1.167556294617939 1.0975042125392236 1.0504298948631332 0.994045295145641 1.0325277421362455 0.9963203690804078 1.0 19.77775681400808 2.4586449402984147 4.191788534943029 1.01083990171987 1.083358378797568 0.2788457348701282 0.05395489842661193 0.29982557011990574 12.342227457750495 0.02058533720948224 0.01766402185439635 287.5046944127767 -2.4586449402984147 0.0725184770776981 YITDWQNVFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YITDWQNVFR 10 0 O75340-2;O75340;A0A024QZ42 O75340-2 PDCD6 Programmed cell death protein 6 0 ; 203.29 4.8408e-07 11228200000.0 7349700.0 9277000.0 8626900.0 8758700.0 7702900.0 9090200.0 8661700.0 8031400.0 9934200.0 9721700.0 False True 7310130.031828432 9585779.336935084 9841492.533640975 9867550.521950264 8683818.656334706 8461815.870029123 8242700.48009274 8630743.850622838 7486049.521460019 9101252.782833885 0.8032004171575438 1.0532373471721472 1.081333830459393 1.0841969514967997 0.9541344322084413 0.9297418797101404 0.9056665798404716 0.948302838802754 0.8225295681908381 1.0 23.117633714545764 3.011792451832339 23.00217545807318 0.9215927773858336 1.0149255680217708 0.175514569210672 0.08514611257329224 134.95554297239175 263236.77256408957 0.024425832729250023 0.029163170100746677 1027.5251292693213 -3.011792451832339 0.09333279063593725 YIVNGSHEANK ddPTM_BT-474_Trastuzumab_2h_R1 2 YIVNGSHEANK 11 0 P55010;H0YLZ1;H0YN40;H0YMJ8;H0YM54 P55010 EIF5 Eukaryotic translation initiation factor 5 0 ; 125.72 0.00032242 350590000.0 713420.0 714030.0 606440.0 560200.0 535920.0 804000.0 782910.0 658200.0 995810.0 755120.0 False True 709579.0259884131 737796.0569097509 691821.4807290254 631121.2625614007 604166.2353532941 748421.3724124247 745037.6522933607 707318.2262718771 750405.9686703613 706927.5951092434 1.003750639948862 1.0436656625290421 0.9786313131857817 0.8927664826323152 0.8546366552007786 1.0586959365998 1.0539094207777078 1.0005525759148972 1.061503290947921 1.0 19.43120293342332 YIYFYEKENDAVTIQVLNQLIQK ddPTM_BT-474_Trastuzumab_2h_R1 1 YIYFYEKENDAVTIQVLNQLIQK 23 1 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 114.72 0.00058578 31819000.0 14445.0 16355.0 13520.0 16463.0 15441.0 21190.0 21082.0 15955.0 29362.0 21964.0 False True 14367.229724990379 16899.366288193716 15423.49848205335 18547.214112010588 17407.319824022667 19725.1851758946 20062.18311893915 17145.643117848373 22126.12853064253 20562.238715673528 0.6987191386917897 0.8218641229620687 0.7500884847862804 0.9020036372728719 0.8465673443793826 0.9592917117949377 0.975680877765843 0.8338412638298542 1.076056398167235 1.0 14.327709726190786 6.740646189292003 0.2257484695090141 1.0108503888338398 2.0085280484949226e-09 0.6689401130794911 0.06425742323718507 17.927889455531663 0.37965863338725736 0.09714758880441597 5.9285371457659055 5503591.47534346 -6.740646189292003 -1.0108503868253118 YKAEDEK ddPTM_BT-474_Trastuzumab_2h_R1 7 YKAEDEK 7 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;;;;; 105.78 0.007158199999999998 43308650000.0 42528870.0 28202590.0 25413170.0 22576740.0 23888740.0 29577760.0 34389400.0 33990030.0 57444400.0 32867600.0 False True 42299899.28932167 29141296.1593243 28991123.44076652 25434952.969154708 26930829.439344775 27533119.06975782 32725853.341734473 36526538.63647514 43287997.33552356 30769961.6286319 1.3747140734150605 0.9470696294989167 0.9421891320719054 0.8266163369370961 0.8752311674735805 0.8948051155233762 1.0635649708214971 1.1870843089543102 1.4068264971524516 1.0 24.87501930878592 1.84001034652907 2.8606397039260747 1.2248487535507517 0.9635046289125632 0.2466448771618196 0.16940918686725198 0.3201767485768193 4.724559211002814 0.09327363633222462 0.0469516710817815 69.18474531327729 -1.84001034652907 -0.26134412463818857 YKAEDEKQR ddPTM_BT-474_Trastuzumab_2h_R1 4 YKAEDEKQR 9 2 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 ;;; 128.27 0.00023739 1170780000.0 1176250.0 1362120.0 1285510.0 1417470.0 1342830.0 1642310.0 1815550.0 1501130.0 2820920.0 1786580.0 False True 1169917.200693661 1407457.340781072 1466498.634146776 1596921.5566635267 1513831.4409230195 1528780.9752818989 1727724.9104254816 1613151.943183689 2125742.0643913946 1672558.9348319063 0.6994774153122675 0.8414994003918449 0.8767993782498077 0.9547774511300068 0.9050990128937735 0.9140371340251414 1.0329829786231834 0.9644813761649673 1.2709519647539556 1.0 20.673625616359356 6.192538853742924 0.2683973430047281 1.0863352882634838 1.3902620272729111e-14 0.6194343705159364 0.08629357934908953 13.00670437473894 0.4198778032954795 0.10182504367815669 5.3643804516496765 1557897.4044073627 -6.192538853742924 -1.0863352882634698 YKAEDEVQR ddPTM_BT-474_Trastuzumab_2h_R1 5 YKAEDEVQR 9 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 ;;;; 133.23 0.000258 8113550000.0 9138110.0 8615460.0 7992470.0 7368280.0 7177210.0 9010330.0 8605100.0 8519730.0 12116110.0 9012060.0 False True 9088911.43109946 8902220.377944449 9117740.304205384 8301103.49251324 8091185.1508434545 8387467.095135366 8188838.43832573 9155515.514912331 9130257.038056096 8436902.615187258 1.0772805904786102 1.0551526767559902 1.0806975877370626 0.9839041495596305 0.9590231770932762 0.9941405605461294 0.9705977195452052 1.0851749667504162 1.082181157528206 1.0 23.008282018272123 3.7504804366199074 24.524662529704923 1.0133485738238412 1.0694545286881507 0.3151996125383806 0.040598206966981305 877.4624750596973 1805343.078334465 0.011932857182193772 0.021269150840770062 5629.637573620885 -3.7504804366199074 0.05610595486430947 YKCEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YKCEGR 6 1 Q04206;Q04206-4;Q04206-2;A0A087X0W8;E9PKH5;Q2TAM5;Q04206-3;A0A087WVP0;E9PKV4;E9PQS6;E9PI38;E9PMD5;E9PNV4;E9PRX2;E9PJR1;E9PM47;E9PN69;E9PNK5;E9PJZ9 Q04206 RELA Transcription factor p65 0 ; 74.335 0.073505 252780000.0 303420.0 333570.0 301750.0 301090.0 281300.0 270680.0 359610.0 297140.0 420140.0 345290.0 False True 301786.4204331312 344672.6758026768 344233.7771419822 339207.9631285471 317121.8876042723 251968.528712183 342214.2904563947 319314.09564634715 316602.12658756756 323253.296582358 0.9335911609372946 1.066261904972906 1.0649041503410588 1.0493565470634705 0.9810321842254637 0.7794770583197651 1.0586567687770072 0.9878138878159678 0.9794242779111275 1.0 18.302305557353296 YKDAIHFYNK ddPTM_BT-474_Trastuzumab_2h_R1 3 YKDAIHFYNK 10 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 ;; 140.3 2.3754e-05 8331070000.0 11328500.0 12165030.0 13280190.0 10268270.0 8381860.0 11658790.0 13652730.0 10419410.0 20257000.0 13136460.0 False True 11267508.614714678 12569935.669634065 15149925.318519218 11568231.92917057 9449240.187823491 10852845.289139597 12992295.291406605 11196959.282891922 15264933.779893262 12298079.876110777 0.9162006368654345 1.0221055478791752 1.2318935533951278 0.9406535041004288 0.7683508550126428 0.8824829077766382 1.0564490898001364 0.9104640233018977 1.2412452946858514 1.0 23.551929746486913 -0.3625338437657031 6.907487866920437 0.9999969708093032 0.9893293417616618 0.0 0.142148837330156 0.0 0.0 0.13798012653818142 0.032522227714708675 0.4339764433454378 0.3625338437657031 -0.010667629047641403 YKDDDDDQLFYTR ddPTM_BT-474_Trastuzumab_2h_R1 4 YKDDDDDQLFYTR 13 1 O60568;H7C2V1 O60568 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 0 ;;; 216.27 2.5314e-11 1621970000.0 1858990.0 1839020.0 1595410.0 1493670.0 1485480.0 1883130.0 1988340.0 1752610.0 2529810.0 1814460.0 False True 1848981.404393207 1900230.6689889343 1820029.8604476878 1682768.4688505656 1674647.0728702256 1752953.6555112058 1892156.3980035814 1883398.6577732554 1906372.223217246 1698659.6093626411 1.088494360024825 1.1186647745759524 1.071450601648547 0.9906448941126951 0.985863832659549 1.0319628758165014 1.1139114555820533 1.1087557786106015 1.1222803042526814 1.0 20.69596535234401 2.2397584924421223 24.999809703838224 1.0974062732474335 1.0467212759825217 0.10770496461757528 0.050106218891046654 58.21733063508829 1215030.554149469 0.01927612363149286 0.015286670776520824 173.68347207749218 -2.2397584924421223 -0.05068499726491171 YKDDPVDLR ddPTM_BT-474_Trastuzumab_2h_R1 5 YKDDPVDLR 9 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;;; 94.616 0.007844499999999999 8620930000.0 11896300.0 12128970.0 10687820.0 10723400.0 10605350.0 12056650.0 12531030.0 12231200.0 15680240.0 12149680.0 False True 11832251.642603185 12532675.434332818 12192572.155803218 12080981.340505026 11955878.459665742 11223202.163801307 11924856.205716712 13143954.252775121 11816054.956451284 11374277.020535637 1.0402640643656471 1.1018436962371987 1.071942606443486 1.0621318013174352 1.0511330467932207 0.9867178497181339 1.0484056423267198 1.155585909244555 1.0388400893628704 1.0 23.43927151088231 -0.8034637519230117 7.499210324127981 1.0000001852590723 1.0668315654038554 0.1545013929370428 0.042005849342977374 0.0 0.0 0.043886436883458974 0.01034413237413642 0.15723030181285938 0.8034637519230117 0.06683138014478307 YKDEDGDLITIFDSSDLSFAIQCSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YKDEDGDLITIFDSSDLSFAIQCSR 25 1 Q92734-2;Q92734;Q92734-4;Q92734-3;C9JTY3;C9JUE0;C9JJP5 Q92734-2 TFG Protein TFG 0 ;; 242.67 1.0401e-38 53342700.0 106970.0 83033.1 73206.6 71588.7 80455.1 94345.0 84885.8 86493.7 112538.0 91229.0 False True 106394.08540548434 85796.80653893117 83513.45295682597 80651.82207984521 90700.5800902613 87823.15221424156 80779.54955875358 92948.29910010927 84804.51783194084 85406.68711492354 1.2457348364574787 1.0045677854648862 0.9778327175300686 0.9443267828819989 1.0619845254999094 1.028293628765467 0.9458223037038814 1.088302359451523 0.9929493895229491 1.0 16.382061412976512 4.739118587585301 24.849855616911835 1.0083578045879198 1.2457349124988484 0.7334880784108145 0.043506864559224014 21.922934796471708 976104.4118688861 0.010482791094905786 0.06206085326754334 54842.66967775116 -4.739118587585301 0.2373771079109286 YKDLDEDELLGNLS(ph)ETELK ddPTM_BT-474_Trastuzumab_2h_R1 4 YKDLDEDELLGNLSETELK 19 1 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 1 YKDLDEDELLGNLS(0.966)ET(0.034)ELK;YKDLDEDELLGNLS(0.829)ET(0.171)ELK;YKDLDEDELLGNLS(0.999)ET(0.001)ELK;YKDLDEDELLGNLS(0.968)ET(0.032)ELK 183.49 1.6326e-14 360695000.0 760098.0 516021.0 413917.0 396731.0 441123.0 645756.0 626974.0 617096.0 1043120.0 711352.0 True False 756005.7168228265 533196.4470437187 472192.91576894047 446957.103922254 497297.39930913434 601116.4076661166 596644.8723467295 663146.837069994 786057.0530918812 665952.9063409126 1.1352239920037446 0.8006518808865538 0.7090485096962952 0.6711542207662491 0.7467455950324502 0.9026410155170866 0.8959265237312395 0.995786384826614 1.1803493093991924 1.0 19.345060633429057 1.8279367246404858 1.5189473496089259 1.0869116502167582 0.80655244473522 0.3993403573204589 0.12856348969691428 0.38104822521539017 1.6646877335868506 0.09783959346321247 0.04098718410393236 67.28786128145016 -1.8279367246404858 -0.28035920548153814 YKDLDEDELLGNLSETELK ddPTM_BT-474_Trastuzumab_2h_R1 2 YKDLDEDELLGNLSETELK 19 1 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 0 ; 245.1 1.3455e-24 1130800000.0 1919270.0 1387100.0 1279230.0 1228340.0 1214950.0 1974750.0 1926080.0 1813620.0 2992200.0 1901610.0 False True 1908936.8635709437 1433268.7849803427 1459334.4647335142 1383847.7180554639 1369666.6809271616 1838240.1805614843 1832908.1520598773 1948961.5337757573 2254812.4034258104 1780247.621749772 1.0722872707419688 0.8050951830912206 0.819736786559592 0.7773344006466392 0.7693686339998825 1.0325755575253697 1.0295804525543173 1.0947699128844557 1.2665723441380574 1.0 20.763646494686693 2.5441675675519244 3.106835583582958 1.099896181735305 0.8412793536550245 0.5632045991407231 0.10437062899321603 0.18848828022633346 3.5807685266792775 0.037062014586479654 0.03326372870141585 350.08021541494014 -2.5441675675519244 -0.2586168280802805 YKDNPFSLGESFGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YKDNPFSLGESFGSR 15 1 Q8N6H7;G5E9L0;A0A0D9SF70;Q8N6H7-2;E9PQP3;Q8N6H7-3;H0YDN9;E9PMU9 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 0 118.24 0.00027986 644810000.0 238580.0 232820.0 259420.0 251470.0 207440.0 245410.0 279620.0 233520.0 330940.0 266690.0 False True 237295.51178872964 240569.2729573378 295944.08108093764 283306.07621619996 233856.25440679077 228445.3843330013 266093.7123478682 250946.44819053303 249384.27136880468 249669.61587520395 0.9504380857754856 0.9635504589296323 1.185342798095479 1.1347238838938616 0.9366628517732114 0.9149907309794097 1.0657833209503305 1.0051140877148916 0.9988571116056754 1.0 17.929660734255762 3.228336082487034 24.998107118753 0.9904852483573185 1.0607899330813628 0.17577855965259193 0.07566598027065025 409.35888299527664 1000846.697654136 0.023754561149984317 0.028696232686130512 1691.7496000654512 -3.228336082487034 0.07030468472404428 YKDPQDENK ddPTM_BT-474_Trastuzumab_2h_R1 4 YKDPQDENK 9 1 C9JVE2;Q96GG9;C9J8R4;C9JRU6;C9J0B2;C9JRE2;C9JAV2;H7C216;Q6PH85-2;Q6PH85 C9JVE2 DCUN1D1;DCUN1D2 DCN1-like protein;DCN1-like protein 1;DCN1-like protein 2 0 ;;; 112.83 0.0017313 1560940000.0 2760320.0 2128910.0 1840220.0 1771100.0 1708970.0 2800350.0 2605930.0 2507970.0 4393380.0 2638930.0 False True 2745458.7438203795 2199769.4823967265 2099306.9805210223 1995321.0784050238 1926597.1996412172 2606768.395814839 2479871.2102806726 2695127.4566136156 3310690.3672758755 2470511.228098361 1.1112917490901895 0.8904106394569865 0.8497459783402533 0.807655134577507 0.7798374594412132 1.0551534298515859 1.0037886823082833 1.09091892639895 1.3400831089621197 1.0 21.23637818195437 2.0896637445425816 1.4425680949494564 1.1575568501792046 0.8886847279919184 0.42798958920792163 0.12169680559651722 0.3810951650682741 1.4986520197090103 0.07887429972103069 0.040469384291741815 122.93165955078844 -2.0896637445425816 -0.2688721221872862 YKEALLGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YKEALLGR 8 1 P52565;J3KTF8;J3QQX2;J3KRE2;J3KRY1;P52565-2;J3KS60 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 0 ; 135.79 0.00074663 2931500000.0 2281900.0 2812200.0 2552200.0 2360400.0 2354900.0 2600900.0 2697700.0 2318000.0 3624000.0 2594900.0 False True 2269614.5039429255 2905802.376989203 2911527.5758799226 2659226.3979827366 2654782.5564141525 2421105.904860043 2567201.944785226 2490980.9305655 2730913.75911207 2429291.260394342 0.9342702297354429 1.1961523199640993 1.1985090562616607 1.0946511195825361 1.0928218446655948 0.9966305581929398 1.0567699257142587 1.0253941020481605 1.1241606980748642 1.0 21.21210404189801 3.003538394200246 3.437631978795085 1.0419516643151068 1.1182772852112823 0.1356578197719599 0.07628287589262091 0.41928864058875376 10.515804322517731 0.023117682254843515 0.026685115018056663 1008.1807345630936 -3.003538394200246 0.07632562089617556 YKEEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YKEEAR 6 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 74.415 0.073312 2441770000.0 2880870.0 2866380.0 2641140.0 2607980.0 2721630.0 2409480.0 2965480.0 2802390.0 3644300.0 2937810.0 False True 2865359.716014748 2961785.725536698 3012989.554799586 2938150.000597783 3068213.4481351427 2242918.318905829 2822028.4031662885 3011518.5720480774 2746211.0961181335 2750316.4506143215 1.0418291012929548 1.0768890703013982 1.0955065022159878 1.0682952501489442 1.1155856074124904 0.8155128179540365 1.0260740732347178 1.094971660943021 0.9985073155871678 1.0 21.391166193585537 YKEEFEK ddPTM_BT-474_Trastuzumab_2h_R1 12 YKEEFEK 7 1 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 ;;;;;;;;;;; 126.41 0.0036066 191991876000.0 80413591.0 65783146.0 60025107.0 55878098.0 52217284.0 77567884.0 80096111.0 75172595.0 106613930.0 71075889.0 False True 79980653.16084576 67972698.24785851 68476120.31801704 62952259.477489606 58866845.60130959 72205798.75423843 76221556.11407241 80782355.7576028 80340355.50496997 66539764.91288993 1.2019978319062574 1.0215349924491692 1.029100725072625 0.9460847894473796 0.8846867084423083 1.0851525978302772 1.1455038384018539 1.214046305443947 1.207403657198774 1.0 25.98771343335376 2.38938488401733 3.7470901199945823 1.1647382616829365 1.011550630279409 0.2635174404111079 0.09458531599049202 0.2566606600989225 7.031037786828348 0.034811085829352086 0.028702148041587855 245.1234632787126 -2.38938488401733 -0.15318763140352742 YKEELIEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YKEELIEK 8 1 Q9UNX3 Q9UNX3 RPL26L1 60S ribosomal protein L26-like 1 0 ; 125.97 0.0011302 308340000.0 1016790.0 884990.0 803100.0 732660.0 731360.0 1118420.0 1100020.0 994370.0 1446380.0 1096510.0 False True 1011315.7156159903 914446.3571622482 916169.4993296626 825414.6808786768 824494.3608896579 1041106.2578774907 1046807.8301155224 1068574.9387085494 1089939.029499037 1026529.793030558 0.9851791175298944 0.8908132655970821 0.8924918746146804 0.804082537577266 0.8031860024788526 1.0141997484592236 1.0197539683919925 1.040958524500165 1.0617704784595485 1.0 19.96934406879572 2.6400940723850423 6.3170846818523625 1.0317744335920833 0.8733694330830758 0.6972214920806569 0.050170272535972324 0.14126618902859542 7.637657105059809 0.01741885483250335 0.016395465969042546 436.61039603252124 -2.6400940723850423 -0.15840500050900752 YKEETIEK ddPTM_BT-474_Trastuzumab_2h_R1 4 YKEETIEK 8 1 P61254 P61254 RPL26 60S ribosomal protein L26 0 ;;; 142.43 0.0005632999999999999 7297750000.0 12663900.0 9849540.0 9975200.0 8375220.0 7927790.0 11544200.0 12067400.0 10984410.0 17558800.0 12284100.0 False True 12595718.969491564 10177375.984727325 11379621.45400729 9435521.993269343 8937347.06480723 10746176.626123765 11483653.760055328 11804122.451903783 13231669.015865594 11500118.221052883 1.0952686509285618 0.8849801183866042 0.9895221279703887 0.8204717388031757 0.777152625130925 0.9344405352678112 0.9985683224571192 1.0264348787558 1.1505680864778258 1.0 23.45514535634206 1.9654123882704417 1.987794969274964 1.0677741816376378 0.9081293202769128 0.33957760645011437 0.08960326499634425 0.3727315782843645 2.729183662826417 0.05448657729929327 0.027382694484444876 92.3447879289786 -1.9654123882704417 -0.15964486136072498 YKEEYAVLISEAQAIK ddPTM_BT-474_Trastuzumab_2h_R1 1 YKEEYAVLISEAQAIK 16 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8Y5T0;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 158.64 8.5833e-09 170760000.0 604050.0 524810.0 495410.0 506270.0 485720.0 614030.0 629380.0 644520.0 870650.0 743460.0 False True 600797.8619162635 542277.9835956561 565159.4218190857 570363.7300909668 547573.5629120055 571583.5513711453 598934.484934917 692617.3552062447 656089.9736122848 696011.7462918714 0.8632007507303187 0.7791218847738421 0.8119969595772986 0.8194742877971282 0.7867303473386803 0.8212268750008317 0.8605235301355887 0.995123083620771 0.94264209922853 1.0 19.408752128462012 1.8956226278317554 2.9684605380602083 0.978327300279468 0.8115160506317712 0.8882186171225278 0.026201788550439677 0.07360005430558347 1.1465794285255584 0.013073947647646696 0.006927475750431573 78.6362197833851 -1.8956226278317554 -0.16681124964769678 YKELGEK ddPTM_BT-474_Trastuzumab_2h_R1 5 YKELGEK 7 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 ;;;; 98.033 0.010543 13245610000.0 13474790.0 13435110.0 11974000.0 11110020.0 11928230.0 15950580.0 17010850.0 15357690.0 22028600.0 15754940.0 False True 13402243.2278299 13882289.514654508 13659835.120126236 12516547.392863976 13447219.386341665 14847953.94822656 16187970.19774243 16503758.812569676 16599946.698117008 14749446.24071724 0.9086607733673242 0.9412075062405486 0.9261252861424025 0.8486113436795251 0.911710118934455 1.0066787393846273 1.0975307095295557 1.1189409109482016 1.125462368362772 1.0 23.814157454566143 2.4985502449825328 2.549643034241723 1.0985543905549666 0.9066635798488529 0.814255619157758 0.039988634242634165 0.10809870901093077 1.4161617343655413 0.0149650353548005 0.012837584696294587 315.17389943479617 -2.4985502449825328 -0.1918908107061137 YKETDLLILFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YKETDLLILFK 11 1 P05455 P05455 SSB Lupus La protein 0 ; 122.35 0.00035811 1104930000.0 4942700.0 4450100.0 4162900.0 3433300.0 3207800.0 4442400.0 4426700.0 4317800.0 6647700.0 4733700.0 False True 4916089.052385591 4598218.888357748 4749000.135424546 3867955.4279758157 3616294.315879792 4135307.3442847664 4212563.609363808 4640016.161344143 5009463.409616247 4431591.21327553 1.1093281884075117 1.03759996512834 1.0716241428582507 0.8728141296942609 0.8160261499405929 0.9331427799334923 0.9505758556304583 1.0470316277016352 1.1303983532166977 1.0 22.079393377204973 -0.1402141324647701 7.281876937786427 1.0000118839516665 0.9911187119569465 0.0 0.0973645190611104 0.0 0.0 0.10135426677613414 0.02388942978975329 0.7240788590121076 0.1402141324647701 -0.008893171994720062 YKETDLLILFKDDYFAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YKETDLLILFKDDYFAK 17 2 P05455 P05455 SSB Lupus La protein 0 ; 170.19 1.0574e-09 1406970000.0 673430.0 667230.0 646830.0 677690.0 722870.0 872320.0 870720.0 797470.0 1310310.0 857730.0 False True 669804.3277051072 689438.3472009478 737898.0416528521 763485.4845148796 814923.2097138307 812018.5716204043 828599.947126587 856981.2608706085 987401.6577544521 802988.9370604018 0.8341389237031589 0.8585900943104617 0.9189392376365286 0.9508044871824297 1.0148623126703566 1.011245029841953 1.0318945988968946 1.0672391876379554 1.2296578597572616 1.0 19.615020586017458 3.5427655905828264 0.5552540996513348 1.0984633930628656 0.7965221301805911 0.7187969153958179 0.056729039052340675 0.6921304368194848 0.38117534790922164 0.03845344672963447 0.11753156549759142 3489.5191866883383 -3.5427655905828264 -0.3019412628822744 YKFENWGACDGGTGTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YKFENWGACDGGTGTK 16 1 E9PPJ5;E9PLM6;P21741;P21741-2 E9PPJ5 MDK Midkine 0 199.41 3.4835e-11 853890000.0 684870.0 592660.0 563570.0 476070.0 518240.0 700580.0 667640.0 592570.0 866640.0 681460.0 False True 681182.7360162095 612386.3298294651 642915.7573617455 536340.4131874436 584234.7921508641 652150.5535879297 635343.7025675237 636790.5824094905 653068.1843810386 637968.6393727411 1.0677370233840286 0.9599003650580241 1.0077544845995383 0.8407002791152561 0.9157735288137223 1.0222297983630237 0.995885476740991 0.9981534249639467 1.023668161844356 1.0 19.283125981603394 2.721860348550199 24.688827082104 1.0060567986612658 0.9546640069831726 0.16408127353311974 0.055593217084643966 1355.8512843168844 2004419.1153678515 0.018730854849452194 0.017707655404857227 527.0603529880854 -2.721860348550199 -0.0513927916780933 YKLDEDEDEDDADLSK ddPTM_BT-474_Trastuzumab_2h_R1 5 YKLDEDEDEDDADLSK 16 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 ;;;; 314.29 8.3709e-58 4789070000.0 9104890.0 5351810.0 4659130.0 3986270.0 4154640.0 6908760.0 6830490.0 6757110.0 11518650.0 6388860.0 False True 9055870.283888372 5529941.760612544 5315095.00611607 4490931.373278525 4683708.777519428 6431173.682671719 6500073.103694278 7261359.860109333 8680033.049502278 5981117.485021771 1.514076643130077 0.9245666507071487 0.8886458123296207 0.7508515565067818 0.7830825576071058 1.0752461724380107 1.0867656620977773 1.2140473545777377 1.4512393497100289 1.0 22.511983625567392 2.046429858455133 1.9457779983938224 1.2436018396595154 0.9569766158749041 0.17335121039554602 0.22395003787338122 0.5212477786368028 3.7297400973216095 0.12882520384757665 0.06917852573234412 111.28326481631026 -2.046429858455133 -0.2866252237846113 YKLDEDEDEDDADLSKYNLDAS(ph)EEEDSNK ddPTM_BT-474_Trastuzumab_2h_R1 3 YKLDEDEDEDDADLSKYNLDASEEEDSNK 29 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 YKLDEDEDEDDADLS(0.002)KYNLDAS(0.997)EEEDS(0.001)NK;YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNK;YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNK 417.7 1.0286999999999994e-175 1265870000.0 927450.0 524828.0 385009.0 377172.0 364832.0 745390.0 706160.0 665847.0 1607860.0 622071.0 True False 922456.7122493818 542296.5827147748 439214.9206417807 424921.936527684 411291.1926713192 693862.9437593238 672000.343006833 715535.8842425563 1211624.447220178 582369.8961982218 1.583970459790738 0.9311892428763054 0.7541854816140509 0.7296426880950125 0.7062370417088447 1.1914471340104313 1.153906387321407 1.2286622109309864 2.0805066593067445 1.0 19.15157625626459 1.7952283494313375 1.7120835011656614 1.519945307320981 0.9466385589355109 0.2568312489259593 0.3513195965733009 0.43589426810141163 2.470422971431 0.247654085293778 0.103612578582695 62.40628777481502 -1.7952283494313375 -0.5733067483854701 YKLDEDEDEDDADLSKYNLDAS(ph)EEEDSNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 YKLDEDEDEDDADLSKYNLDASEEEDSNKK 30 3 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNKK 187.09 2.8454000000000003e-18 996230000.0 568860.0 293870.0 227420.0 236090.0 270190.0 458820.0 474840.0 452340.0 1135100.0 360560.0 True False 565797.3209662877 303651.28530183376 259438.7592299241 265978.9697931469 304597.0949584019 427102.853346105 451870.1751350466 486095.9077359787 855369.8145607368 337548.7521090532 1.676194379126288 0.8995775674019733 0.7685964104708235 0.7879720133203634 0.9023795616343874 1.2653071613433762 1.3386812195622015 1.4400761510708646 2.5340630330174916 1.0 18.364736359849243 1.9741342031331301 1.540743379423104 1.73840755601715 0.9939225527171293 0.2915164109098144 0.43123144860240403 0.4482017881264965 1.9815132524309036 0.28067774339396007 0.13242985005369123 94.21806986956524 -1.9741342031331301 -0.7444850033000207 YKNECR ddPTM_BT-474_Trastuzumab_2h_R1 3 YKNECR 6 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 ;; 90.285 0.044874 467711000.0 973440.0 994000.0 824570.0 785620.0 821480.0 751670.0 918060.0 871180.0 1293390.0 960910.0 False True 968199.1071993514 1027084.6891143104 940662.2887090779 885079.4114485662 926090.6087065681 699708.8221408546 873649.9304702235 936191.8753624042 974651.3650380682 899583.9011235586 1.0762743819560288 1.1417330699576842 1.0456637646963372 0.9838764459247474 1.0294655201698288 0.7778138551245026 0.9711711485488522 1.0406943412316774 1.0834468734053067 1.0 19.77889831743668 3.949007978244356 2.907292709279314 0.9814884973064998 1.1089325715450622 0.29255125530740855 0.07785622743886059 0.3383968107780518 5.652907934563504 0.0219806552435994 0.04875022173223823 8892.17453154064 -3.949007978244356 0.1274440742385624 YKPESEELTAER ddPTM_BT-474_Trastuzumab_2h_R1 9 YKPESEELTAER 12 1 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 P4HB Protein disulfide-isomerase 0 ;;;;;;;; 168.89 4.1335e-05 48422610000.0 15850200.0 17767810.0 16413240.0 16282420.0 17095250.0 17512220.0 20264550.0 17900310.0 21266950.0 17718810.0 False True 15764864.284322757 18359200.814982034 18724081.525560472 18343772.702525884 19272228.75601474 16301641.450731719 19284276.29840139 19236122.028132416 16025995.135029921 16587980.375963552 0.9503787638407438 1.1067773411153192 1.1287740340404664 1.1058472633055754 1.16181887844169 0.9827381683157315 1.1625451598884724 1.159642198275451 0.9661209364734984 1.0 23.983634909821195 4.740648645944286 23.62887235055147 1.0983792251884084 0.9503786497459823 0.2211553075657533 0.07313599345972455 114.87109825040437 1299707.936270147 0.01656549985283346 0.10883675184079734 55036.226073273174 -4.740648645944286 -0.14800057544242606 YKPS(ph)PER ddPTM_BT-474_Trastuzumab_2h_R1 1 YKPSPER 7 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 YKPS(1)PER 73.067 0.03022 220420000.0 361660.0 355340.0 290410.0 328050.0 321340.0 387810.0 384230.0 375950.0 500110.0 388220.0 True False 359712.8627442034 367167.2770924338 331297.2037110291 369581.0963642761 362260.744268599 361001.6075065445 365643.3269988609 404005.29803541815 376864.5916306667 363443.46722813626 0.9897353926529897 1.0102459122259035 0.9115508561420126 1.0168874383214246 0.9967457856140393 0.9932813217411363 1.0060528251821452 1.1116042368752248 1.0369276809537642 1.0 18.47137144823097 1.9463690786988772 8.480085012438291 1.061360261744774 0.987046473789812 0.34756722050797784 0.037624191633559734 0.3300436475929898 49.07234999644043 0.015357354051838442 0.009719066250114294 88.38306917022398 -1.9463690786988772 -0.07431378795496191 YKQENTR ddPTM_BT-474_Trastuzumab_2h_R1 1 YKQENTR 7 1 Q9H2M9 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit 0 89.355 0.016356 63624000.0 67582.0 62975.0 67421.0 54810.0 63700.0 58349.0 76292.0 61446.0 95512.0 80141.0 False True 67218.14602106606 65071.084805808576 76913.29076616256 61748.94038020406 71811.81742051961 54315.47096877179 72601.46449625764 66031.41253646578 71974.34739522947 75026.33276783796 0.8959273836436387 0.8673099484572306 1.0251506095088456 0.8230302362142695 0.9571548384583135 0.7239520974168628 0.9676797707934913 0.8801098241172719 0.9593211441900996 1.0 16.195109421636555 1.0670128450681076 3.054226392296193 1.000188853688734 0.8929785616486886 0.1721302933465656 0.07849957863372793 0.3788090467186653 7.249635420586224 0.06893513895689922 0.018260793350170435 11.668441281387489 -1.0670128450681076 -0.1072102920400454 YKVEYPIMYSTDPENGHIFNCIQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YKVEYPIMYSTDPENGHIFNCIQR 24 1 Q5VV87;Q5VV89;O14880 Q5VV87 MGST3 Microsomal glutathione S-transferase 3 0 167.61 6.9164e-12 441290000.0 192840.0 233980.0 265820.0 187440.0 249160.0 470030.0 220700.0 203450.0 331150.0 310990.0 False True 191801.77086653834 241767.88285610342 303245.14545114076 211169.88478134375 280889.0491129776 437537.9324316068 210023.8978441263 218632.47209816708 249542.51968266035 291142.35194806586 0.6587903463139985 0.830411244665737 1.0415700203769522 0.725314896195564 0.9647825101140995 1.5028316200099088 0.7213787222602038 0.7509469873938741 0.8571151466385554 1.0 18.151365195385328 4.609160176005255 3.36453693788377 0.9286726227348338 0.6540961034507471 0.13856675366169102 0.21704523963190792 0.5921091867958294 10.886914449200264 0.055655730065380694 0.33546410467220517 40659.326078656064 -4.609160176005255 -0.27457651928408666 YKVPDGKPENEFAFNAEFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YKVPDGKPENEFAFNAEFK 19 2 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 ; 216.65 2.1274000000000003e-19 5838400000.0 3940200.0 2649400.0 2453200.0 2335690.0 2366630.0 3777300.0 3545600.0 3526900.0 6072000.0 3569700.0 False True 3918986.4009973705 2737583.6774038817 2798589.2364033475 2631388.1145163095 2668006.3023849973 3516184.1418077704 3374085.7824926763 3790095.187235314 4575636.960631472 3341878.6898260727 1.1726896050799898 0.8191750603449818 0.8374299297348221 0.7873978557412147 0.7983552217222621 1.0521579231802605 1.0096374212399313 1.1341211153994846 1.369181046146714 1.0 21.6722279338535 2.130212759068681 1.4718625036049133 1.1822629208268662 0.8780112242703354 0.4152290890290018 0.13930736087711892 0.3705203484713912 1.5331614637777777 0.08544460023637845 0.04570151880714942 134.96238958236563 -2.130212759068681 -0.30425169655653084 YKYEDKDGK ddPTM_BT-474_Trastuzumab_2h_R1 1 YKYEDKDGK 9 2 A0A499FJT0;Q8NHP1;O43488;H3BLU7 A0A499FJT0;O43488 AKR7L;AKR7A2 Aflatoxin B1 aldehyde reductase member 4;Aflatoxin B1 aldehyde reductase member 2 0 63.408 0.042892 501930000.0 791980.0 557570.0 494100.0 503450.0 433890.0 758960.0 788180.0 655910.0 1261900.0 719130.0 False True 787716.0676772498 576128.3803918173 563664.9852058107 567186.7183801087 489143.31963248475 706494.8815996677 750052.7222600055 704857.3348434935 950921.6535936868 673234.5077218321 1.1700470766758724 0.8557618092711652 0.8372490992970707 0.8424801638576429 0.7265571120050037 1.0494038459056203 1.1141032042432282 1.0469714887739048 1.4124671903873796 1.0 19.360749600663876 2.52470655420054 5.715397351407873 1.1300066396205257 0.8791167355402508 0.40659721552013095 0.14682447026259754 0.20856951618512543 16.46372147505484 0.048074927401332186 0.04432263713287258 334.73918484249083 -2.52470655420054 -0.2508899040802749 YKYPNISCELLTSDVSQMNDR ddPTM_BT-474_Trastuzumab_2h_R1 1 YKYPNISCELLTSDVSQMNDR 21 1 Q5H9R7-2;Q5H9R7;Q5H9R7-5;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3;E9PNN8 Q5H9R7-2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 0 181.87 4.4459e-17 342830000.0 382950.0 390990.0 354900.0 356770.0 393680.0 494410.0 461090.0 402280.0 470900.0 454740.0 False True 380888.23974974506 404003.86579155375 404866.83515390015 401937.0454195482 443812.8144758266 460232.6004159537 438785.3151651485 432300.1763364488 354853.00473671954 425718.103877499 0.894695894491126 0.9489938579351712 0.9510209489949273 0.9441389542954606 1.0425039725431418 1.0810735935918439 1.0306945163210857 1.0154611053629137 0.8335398506774074 1.0 18.69953891719663 3.336463699724398 6.965214143850232 1.0078503836079253 0.935853654837639 0.20309515166832748 0.06301544093478939 0.3476709773278946 21.361316402549217 0.017973723003294945 0.024355263864640018 2170.0198160241207 -3.336463699724398 -0.07199672877028629 YLAADKDGNVTCER ddPTM_BT-474_Trastuzumab_2h_R1 2 YLAADKDGNVTCER 14 1 Q16658 Q16658 FSCN1 Fascin 0 ; 123.63 9.2842e-05 590450000.0 376060.0 350590.0 318380.0 333290.0 302700.0 463170.0 406740.0 352580.0 547140.0 455920.0 False True 374035.334744194 362259.17621387 363205.1365914304 375484.4798270064 341247.0507565349 431152.148084904 387064.43230231 378891.3099649632 412304.67830037937 426822.79526724975 0.8763246454772793 0.8487343699322477 0.850950653570445 0.8797198368749296 0.799505215139382 1.0101432089983466 0.9068504226911182 0.8877016742456905 0.9659856101223927 1.0 18.703277702475475 2.7462549400930887 24.999970642870085 0.938420698853224 0.8525060586245515 0.5927425879639004 0.04171176151567729 490.176974021569 1592655.890093098 0.012934826657070372 0.013482194314367382 557.5129248313899 -2.7462549400930887 -0.08591464022867246 YLADPSNLFVVSSDFCHWGQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLADPSNLFVVSSDFCHWGQR 21 0 Q9Y316-2;Q9Y316;Q9Y316-3 Q9Y316-2 MEMO1 Protein MEMO1 0 141.83 1.5215999999999998e-07 242520000.0 188800.0 289940.0 257700.0 308050.0 280670.0 271820.0 280780.0 200610.0 255570.0 281520.0 False True 187783.52177765197 299590.47762756865 293981.9200314458 347049.09841492237 316411.660838575 253029.7231954539 267197.5987162384 215580.53687693915 192588.19796254716 263553.15257860237 0.7125072113172587 1.1367364597857295 1.1154559038855296 1.316808753829716 1.2005610926782901 0.9600709409840584 1.0138281257574755 0.8179774545198968 0.73073759914562 1.0 18.00773442388355 2.0850939039643515 1.7860805920067229 0.8348022275381275 1.104007159352865 0.2686495471079081 0.16286590603551807 0.431156628967975 2.622659083948525 0.0955125266144279 0.0517646758317908 121.64489950874076 -2.0850939039643515 0.2692049318147376 YLAEFATGNDR ddPTM_BT-474_Trastuzumab_2h_R1 6 YLAEFATGNDR 11 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 ;;;;; 256.48 3.9532e-20 9621530000.0 2766160.0 3033180.0 2665160.0 2792510.0 2775960.0 2846670.0 2875500.0 2671260.0 3007920.0 2897010.0 False True 2751267.301909271 3134137.5627039736 3040391.3620140012 3146041.4796775025 3129462.051596007 2649886.403240391 2736401.079523268 2870602.9855834297 2266658.420063018 2712120.341544954 1.0144340794044622 1.1556041650123159 1.121038515673699 1.1599933201656407 1.1538802329889664 0.9770534008571642 1.0089526772121338 1.0584349601346215 0.8357514175686689 1.0 21.370989764132588 2.734208383053367 24.978578727056885 0.9888940941919243 1.125082609525513 0.5387415860587709 0.06647825394341797 304.97557958341656 1750326.1106415417 0.020949603772000565 0.020379119196471257 542.2610155145188 -2.734208383053367 0.13618851533358878 YLAEFATGNDRK ddPTM_BT-474_Trastuzumab_2h_R1 4 YLAEFATGNDRK 12 1 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 ;;; 200.93 2.4734000000000004e-07 4864880000.0 3376990.0 3578790.0 3103219.0 3227895.0 3480373.0 4570100.0 4812130.0 4187530.0 5824590.0 4687470.0 False True 3358808.6610588636 3697907.861725761 3540125.261536916 3636546.176036467 3923577.8717630478 4254179.743858231 4579348.887778224 4500024.752446488 4389197.840007327 4388311.65145503 0.7653988430710443 0.8426721152540859 0.8067169204728472 0.8286891326031276 0.8940973621283506 0.9694342794563543 1.0435331971602 1.0254569661100568 1.000201942939035 1.0 22.06523455678877 2.8746809304533727 1.5645117353617601 1.0219255030787 0.8081406000368868 0.9460542641609595 0.02243752482382869 0.07491691265575762 0.3705787576828949 0.008371187560081875 0.009016994467834981 749.343475801524 -2.8746809304533727 -0.2137849030418132 YLAEKYEWDVAEAR ddPTM_BT-474_Trastuzumab_2h_R1 5 YLAEKYEWDVAEAR 14 1 P13639 P13639 EEF2 Elongation factor 2 0 ;;;; 217.48 5.2362e-12 2873370000.0 3238680.0 4046720.0 3862450.0 4244850.0 3900560.0 4387660.0 4706290.0 4097020.0 6370070.0 4943280.0 False True 3221243.306731177 4181412.628906104 4406249.386982759 4782247.574765722 4397273.195569575 4084351.391640669 4478628.7729262905 4402760.436646018 4800251.603064844 4627795.638245066 0.6960642946525453 0.903543059323977 0.9521270452326369 1.0333748394687599 0.9501874195199101 0.8825695235733272 0.967767188316176 0.9513731333036166 1.037265250737212 1.0 22.14189372629332 4.764983345305093 2.127285854763133 0.9675061628451168 0.6102723597265608 0.7907143188318994 0.042669780770530366 0.328351609933399 1.5709993725034586 0.011010131253404356 0.22971327515637724 58208.08952086206 -4.764983345305093 -0.357233803118556 YLAEVAAGDDKK ddPTM_BT-474_Trastuzumab_2h_R1 8 YLAEVAAGDDKK 12 1 B7Z2E6;H0YB80;P63104-2;P63104;E7EX29;B0AZS6 B7Z2E6;P63104 YWHAZ 14-3-3 protein zeta/delta 0 ;;;;;;; 194.24 2.8517e-06 48061750000.0 21810360.0 15857430.0 14450010.0 13614920.0 13536090.0 21092480.0 21332830.0 19502850.0 32985890.0 20506260.0 False True 21692935.44511878 16385234.971531134 16484445.806261513 15338567.476030815 15259830.826808814 19634406.50395722 20300879.51357549 20958251.700465664 24856959.397780664 19197532.930507567 1.1299855832332326 0.853507324656946 0.8586752196718684 0.7989863870297461 0.7948849928814972 1.0227567560389699 1.0574733528032945 1.0917158874701065 1.294799674924869 1.0 24.19441758674077 2.369311964257074 2.151590590144254 1.1240542027525982 0.8802228962347995 0.46109658364192163 0.1134897216216585 0.27180202623594657 2.5782789694001704 0.048388621927862904 0.036558648995573116 234.051788571224 -2.369311964257074 -0.2438313065177986 YLAEVACGDDR ddPTM_BT-474_Trastuzumab_2h_R1 6 YLAEVACGDDR 11 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 ;;;;; 265.49 1.3781000000000002e-20 14328100000.0 3145500.0 3751570.0 3425340.0 3481690.0 3285720.0 3400350.0 3634620.0 3101720.0 3925480.0 3434570.0 False True 3128564.9774979022 3876438.739578048 3907598.098410996 3922471.597014286 3704136.966011773 3165291.808062918 3458799.5450032516 3333186.0966150234 2958098.0527370996 3215372.8021166855 0.9730022520058521 1.2055954248994647 1.215286170187985 1.2199119164135854 1.1520085520327015 0.9844245140032287 1.075707159905787 1.0366406329060136 0.9199860279933259 1.0 21.61655458793003 2.769406513941775 8.36585872002368 1.0141972566513862 1.1634656290209826 0.48540241700513886 0.07635458664184508 0.2740057133812843 68.81276105562442 0.023559733352936398 0.02474034240395851 588.0395193640396 -2.769406513941775 0.14926837236959645 YLAEVACGDDRK ddPTM_BT-474_Trastuzumab_2h_R1 4 YLAEVACGDDRK 12 1 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 ;;; 219.42 5.1286e-11 32393700000.0 7492450.0 7768530.0 7230300.0 6813320.0 6865500.0 8599720.0 8852950.0 8210100.0 11139640.0 8936510.0 False True 7452111.481689459 8027100.82487445 8248263.3931057975 7675885.613414567 7739780.729993365 8005241.597963397 8424698.986946795 8822779.352043059 8394424.985528465 8366174.28086887 0.8907430363637511 0.9594709069389354 0.9859062357770023 0.9174905226355609 0.9251278386217827 0.9568580965697994 1.0069953964755138 1.054577523231654 1.0033767769725042 1.0 22.996136621277714 2.237566076251889 3.16290571742921 1.0264081772749938 0.9391207440339838 0.6511079079083498 0.027783514689976523 0.1449286630779672 3.0206019228843024 0.011272234513343443 0.008338667651480563 172.80888826515468 -2.237566076251889 -0.08728743324100996 YLAEVATGDDKKR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLAEVATGDDKKR 13 2 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 135.58 4.6272e-05 689080000.0 796900.0 1031700.0 1003600.0 933340.0 822870.0 976100.0 1003700.0 810560.0 1244400.0 979040.0 False True 792609.578943913 1066039.510824179 1144898.1565524219 1051500.748302493 927657.6169673931 908624.5044922474 955147.1964936543 871048.1031402809 937734.2941056992 916556.829001686 0.864768614301007 1.163091558638333 1.2491294814741005 1.1472291897577023 1.0121114017314106 0.9913455180754275 1.0421036276975875 0.9503481678152209 1.0231054577675012 1.0 19.805864808968643 3.1854199988522858 6.643322435420501 0.9987109383415617 1.1202356678378074 0.21530498046864843 0.09457091704630156 0.2774275981670854 26.29810156204297 0.02780107340422488 0.03362114865473902 1532.5688666906674 -3.1854199988522858 0.12152472949624571 YLAEVATGEKR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLAEVATGEKR 11 1 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed 0 ;; 134.3 0.00023031 2407530000.0 1610999.0 1650490.0 1449462.0 1579530.0 1443250.0 1693070.0 1763230.0 1491377.0 2201870.0 1937320.0 False True 1602325.5603828153 1705425.561907726 1653533.6506504426 1779498.336047139 1627039.3326870464 1576032.0559580862 1677935.82870729 1602671.1247989568 1659248.6420463822 1813678.5789769003 0.8834672135162397 0.9403130089730453 0.91170159355535 0.9811541894324834 0.8970935377121025 0.8689698793526739 0.9251561153982516 0.883657745852094 0.9148526432849903 1.0 20.790487372708075 0.9354114645214672 21.432213729772517 1.0000000002189118 0.9113383354377915 0.4259414248327361 0.030734122706595122 6026.747904134917 1999841.4377308574 0.029623474710538337 0.007405868723289195 8.618098718283555 -0.9354114645214672 -0.08866166478112025 YLAFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLAFLR 6 0 P40429;M0QYS1 P40429 RPL13A 60S ribosomal protein L13a 0 108.99 0.06965199999999999 161200000.0 106200.0 151340.0 191990.0 106820.0 58849.0 89164.0 116180.0 58187.0 220260.0 85497.0 False True 105628.2309999292 156377.26041303793 219020.52319300477 120343.40104749873 66343.07132464934 83000.30254947937 110559.92954930033 62529.20940759909 165979.87433278793 80040.50826233564 1.3196846608435928 1.9537264793535023 2.7363709694990583 1.5035311951427008 0.8288686911783161 1.0369787043011134 1.3812996937367787 0.7812195445168508 2.0736984051723275 1.0 16.288442708027773 3.484152024983616 23.979026423285763 1.154190396089999 2.0185813195194884 0.37978887687188667 0.46769787363560683 175.90790685347193 599948.8299175256 0.12474769182206788 0.17594177471829567 3048.962093433487 -3.484152024983616 0.8643909234294893 YLALDEADR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLALDEADR 9 0 Q9UJV9 Q9UJV9 DDX41 Probable ATP-dependent RNA helicase DDX41 0 91.318 0.025205 60679000.0 117990.0 259500.0 237680.0 302010.0 281510.0 202370.0 195670.0 157960.0 135140.0 196110.0 False True 117354.75494992136 268137.30062893755 271143.2780484056 340244.43503421685 317358.629859505 188380.63822773925 186204.69456801176 169747.77730462726 101836.55778322424 183594.09190178188 0.6392076876455433 1.4604898112537528 1.4768627641539809 1.8532428331966089 1.7285884669387057 1.026071352712799 1.0142194263398545 0.9245819162603444 0.5546831966559369 1.0 17.486160107692104 2.565228626619485 5.0118632109556565 0.89266623687767 1.457949280979549 0.4041193444619601 0.3230897806715026 0.23361722173161867 9.79890138080167 0.11117375270238854 0.10346318339461487 367.4757006459814 -2.565228626619485 0.5652830441018789 YLANIEQQHGNSGR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLANIEQQHGNSGR 14 0 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 0 ;; 178.23 2.0056e-06 919440000.0 659990.0 754620.0 729420.0 769090.0 720440.0 823290.0 835410.0 720250.0 908350.0 836140.0 False True 656436.6871717824 779737.0705225769 832115.9957677041 866456.7151434247 812183.7636175696 766377.9001161988 794998.0267238847 773998.7123553939 684499.3137664032 782776.8293445305 0.8386000486517455 0.9961166980063795 1.0630309490183665 1.106901332106323 1.0375674562284418 0.9790503134308874 1.015612620252937 0.988785926384041 0.8744501473549986 1.0 19.57824152641011 -0.6133998593707433 7.677468570131574 0.9999867130203065 0.9966221879172784 0.0 0.07673082963776791 0.0 0.0 0.07490510704838783 0.017655303046473104 0.24355673339763276 0.6133998593707433 -0.003364525103028093 YLCEGTES(ph)PYQTGQLHPAIR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLCEGTESPYQTGQLHPAIR 20 0 Q5TG12;E9PGC5;Q15262;Q15262-2;Q15262-3;Q15262-4;H0Y6V4;A0A0G2JQF6;H0Y6P5 Q5TG12 PTPRK Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase kappa 1 YLCEGT(0.034)ES(0.966)PYQTGQLHPAIR;YLCEGT(0.023)ES(0.977)PYQTGQLHPAIR;YLCEGT(0.004)ES(0.996)PYQTGQLHPAIR;YLCEGT(0.004)ES(0.996)PYQTGQLHPAIR 283.44 4.3296999999999986e-45 1714230000.0 1265110.0 1451310.0 1525060.0 1304080.0 1387670.0 1850340.0 1693520.0 1460420.0 1888120.0 1654010.0 True False 1258298.788326934 1499615.9760145776 1739775.1919408508 1469176.3942896647 1564381.5491355169 1722430.3510318464 1611597.96772535 1569403.9562624954 1422818.125511776 1548449.6657307963 0.8126184635992514 0.9684628497800273 1.1235594094172623 0.9488047476159205 1.010288925599142 1.1123579856365169 1.0407816304217745 1.0135324324680646 0.9188662421521283 1.0 20.562393056514466 4.674704335033141 3.6102844428210656 1.0233557931918962 0.8013084199257896 0.5182674834207226 0.060066543852167156 0.18051329801190302 4.038482968397233 0.014278863127760503 0.09524959782507066 47282.92501670648 -4.674704335033141 -0.22204737326610657 YLDEDTIYHLQPSGR ddPTM_BT-474_Trastuzumab_2h_R1 6 YLDEDTIYHLQPSGR 15 0 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 0 ;;;;; 230.16 3.654e-13 7466110000.0 3843100.0 5110410.0 4935690.0 5004730.0 5023520.0 4946080.0 5119030.0 4306080.0 5344630.0 5522240.0 False True 3822409.1766085527 5280506.907541918 5630592.2502134545 5638328.304853471 5663235.495264183 4604169.131419949 4871402.962306373 4627421.555431183 4027517.550872828 5169805.915372474 0.7393718911656968 1.0214129880273208 1.0891302966463068 1.0906266883419822 1.0954445075828652 0.8905883908967264 0.9422796604068255 0.8950861272512175 0.7790461802244762 1.0 22.30167868928691 2.713654699197269 23.794018672548887 0.8984519679414162 1.017173840410686 0.1855452467289621 0.10975200533126829 670.7789615825145 640831.1185085615 0.03607265799349666 0.034028180559496926 517.1954543528843 -2.713654699197269 0.1187218724692698 YLDESSGGWR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLDESSGGWR 10 0 K7ENE5;O00115-2;O00115 K7ENE5 DNASE2 Deoxyribonuclease-2-alpha 0 ;;; 286.03 3.8568e-24 1434120000.0 1351080.0 1742980.0 1592560.0 1494020.0 1446870.0 1441510.0 1520130.0 1337540.0 1449300.0 1292030.0 False True 1343805.9353991013 1800994.0356463392 1816778.6052203309 1683162.7788146783 1631120.3182296273 1341861.8066495452 1446595.504439474 1437354.0266905008 1092139.434625033 1209571.5392374657 1.1109768143571395 1.4889520604806197 1.5020017802052938 1.3915363616076586 1.3485108282705736 1.1093695272422477 1.1959569628692093 1.1883166725273917 0.9029142958452347 1.0 20.206064668324476 2.1033350379717923 0.735322028286564 0.9844745459545982 1.394437559709832 0.5819079394245337 0.1247623573800295 0.4929187617689028 0.5065724764410487 0.10853482795189608 0.06247917118465733 126.86301775622142 -2.1033350379717923 0.4099630137552338 YLDIHER ddPTM_BT-474_Trastuzumab_2h_R1 2 YLDIHER 7 0 P62072 P62072 TIMM10 Mitochondrial import inner membrane translocase subunit Tim10 0 ; 107.9 0.0073747 514560000.0 544250.0 887870.0 814120.0 788730.0 873830.0 881280.0 720210.0 680330.0 825910.0 753350.0 False True 541319.818471859 917422.2162212501 928741.0195421069 888583.1371296914 985107.0709038092 820359.1879099756 685370.6908306213 731099.67924574 622375.5471270005 705270.5580246155 0.7675349726607554 1.3008088963629048 1.3168577774512626 1.2599180938709735 1.3967789519854403 1.1631836584922963 0.971784066458507 1.0366229965610203 0.8824635312584227 1.0 19.42781728916881 2.322843294086233 4.326428592352162 0.9815689249620004 1.2270800452754524 0.3154000636917963 0.1638984939310275 0.25395542295091406 8.80417898344369 0.05899362842102416 0.047976462888224256 210.30194730615318 -2.322843294086233 0.245511120313452 YLDLHDCYLK ddPTM_BT-474_Trastuzumab_2h_R1 4 YLDLHDCYLK 10 0 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ;;; 131.28 0.0002542 2434010000.0 4516930.0 4980500.0 4938300.0 4471320.0 3791750.0 4799400.0 5068000.0 4325770.0 7035600.0 5050500.0 False True 4492611.350758096 5146272.931724177 5633569.715526924 5037388.6535452325 4274606.887036976 4467628.774572376 4822841.478359913 4648580.923214985 5301770.652209952 4728172.766049407 0.9501791861366071 1.0884274298682428 1.1914898194877117 1.0653986017000365 0.9040716358189668 0.9448954163968236 1.020022261663168 0.9831664689992018 1.1213149168912053 1.0 22.17285132145741 3.45535559422827 24.89460887872956 0.992613613170667 1.0863004466962856 0.20206889811196294 0.07561355743110222 312.6141062407835 357553.0004728329 0.02128560889228223 0.028823009175183892 2853.353597196311 -3.45535559422827 0.09368683352561857 YLDPEYIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLDPEYIDR 9 0 X6RA56;X6RLR1;O75935-2;O75935;X6RCK5;A0A0A0MRV8;O75935-3 X6RA56 DCTN3 Dynactin subunit 3 0 ; 149.65 0.00020266 562770000.0 986530.0 1214660.0 1084680.0 1143030.0 1057690.0 1141510.0 1137110.0 1011340.0 1252790.0 1158840.0 False True 981218.6320937881 1255089.2238225231 1237393.5157924264 1287737.4808024943 1192380.55208021 1062600.100525504 1082103.6451179625 1086811.326280462 944056.6910259399 1084881.8390671618 0.9044474676961053 1.1568902516625355 1.140579066985214 1.186984088432855 1.0990879459328782 0.9794615987296673 0.9974391736969364 1.0017785229172602 0.870193100326658 1.0 20.049106488053877 2.7445619227603615 5.133534106738686 0.9741910380248054 1.1090023049865574 0.38580133019256224 0.08000836811884725 0.1866387736180614 16.02997651316217 0.025294791127189967 0.025484526115609887 555.3437937396108 -2.7445619227603615 0.13481126696175194 YLDQMEDLYEDFHIVK ddPTM_BT-474_Trastuzumab_2h_R1 6 YLDQMEDLYEDFHIVK 16 0 O43681 O43681 ASNA1 ATPase ASNA1 0 ;;;;; 249.69 1.2476e-20 1527009000.0 1602298.0 1649158.0 1564564.0 1456368.0 1609624.0 1900145.0 1825953.0 1612834.0 2313677.0 1967530.0 False True 1593671.4056000435 1704049.227092936 1784841.0117659268 1640744.0394752263 1814600.0754110883 1768792.4486102066 1737624.6775721617 1733191.8628851064 1743502.3050334258 1841960.5509128203 0.865203874648818 0.9251279709809531 0.9689898140768614 0.8907595977894982 0.9851460035405357 0.9602770524773977 0.9433560760631096 0.9409495018914431 0.9465470387894022 1.0 20.8128107330271 5.9869279766483094 1.003725861525745 0.9522734456857695 1.2860046474545582e-09 0.479982108430147 0.028036321922093505 16.683684462784676 1.8395798658956894 0.007877431281684315 29.95749087080849 970349.0313186706 -5.9869279766483094 -0.9522734443997649 YLEEDNS(ph)DES(ph)DAEGEHGDGAEEEAPPAGPRPGPEPAGLGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGR 40 1 Q9H1C4 Q9H1C4 UNC93B1 Protein unc-93 homolog B1 2 YLEEDNS(1)DES(1)DAEGEHGDGAEEEAPPAGPRPGPEPAGLGR 154.05 1.2367999999999998e-13 129110000.0 21709.0 39596.0 36956.0 32810.0 34046.0 50825.0 37042.0 35773.0 41548.0 31447.0 True False 21592.121156096633 40913.92892371256 42159.0835726896 36963.74263591492 38381.556293548056 47311.5873791809 35250.136945818405 38442.56291161329 31309.052114676655 29440.02553686878 0.7334273922098355 1.3897382280621533 1.4320328465711516 1.2555608210877374 1.3037202106187538 1.6070498077500284 1.1973541565605443 1.3057924444892317 1.0634859020576333 1.0 14.84549130236754 1.1657049586802128 3.6853388952184383 1.0016681229653666 1.2957134029096502 0.1747656829642854 0.21277217544563953 0.34890780938484134 8.439652450706665 0.1907114361271113 0.05082447905747682 14.645525477981801 -1.1657049586802128 0.29404527994428364 YLEEIATQMR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLEEIATQMR 10 0 Q01813;Q01813-2;B1APP6;H0Y3Y3 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type 0 96.665 0.012506 0.0 147280.0 210900.0 198670.0 198770.0 208510.0 206660.0 220590.0 192740.0 203150.0 198120.0 False True 146487.06084434636 217919.67900825772 226641.00912940345 223934.26161965248 235062.51256440431 192374.08062531272 209919.21896436685 207123.237513889 153086.40457053448 185475.8119809345 0.789790643210146 1.1749223614702828 1.221943749477697 1.2073502157934817 1.267348610332904 1.0371922816819226 1.1317875723112885 1.1167129303910512 0.8253712596565993 1.0 17.5008715307683 1.2751150192147134 11.97492055276539 0.9128003381114925 1.1288932969625287 0.2764073634632115 0.1322521621678738 0.8565577380862093 279.80451245341413 0.08677842776101156 0.031560170666988456 18.841480240615315 -1.2751150192147134 0.2160929588510362 YLEES(ph)DEDDLF ddPTM_BT-474_Trastuzumab_2h_R1 2 YLEESDEDDLF 11 0 P11388;P11388-2;P11388-3;P11388-4;J3QR57 P11388 TOP2A DNA topoisomerase 2-alpha 1 YLEES(1)DEDDLF;YLEES(1)DEDDLF 131.41 0.00021394 985540000.0 1250910.0 2117200.0 1638370.0 1802940.0 1853710.0 2278600.0 2192500.0 1875650.0 2607300.0 2042620.0 True False 1244175.2395491658 2187669.722125575 1869038.2550326725 2031192.0191403967 2089768.980700022 2121085.74524745 2086440.3988366418 2015620.5273577124 1964765.851030046 1912258.2428250373 0.6506313905129821 1.144024208201955 0.9773984565345554 1.0621954575233807 1.0928278063598476 1.1092046553889634 1.0910871513641798 1.0540524716891662 1.0274584295306461 1.0 20.866845935992806 4.745339193025306 24.986293405591613 1.064356889577212 0.6506312009207682 0.8684828306736014 0.04802004199895653 246.62898230024157 909067.8447530008 0.010893710646542846 0.10721647117308182 55633.85996533468 -4.745339193025306 -0.41372568865644377 YLELLER ddPTM_BT-474_Trastuzumab_2h_R1 4 YLELLER 7 0 K7EIG1;A0A494C0R8;O75153;I3L2B0 K7EIG1 CLUH Clustered mitochondria protein homolog 0 ;;; 170.73 0.0022429000000000004 789766000.0 566275.0 696696.0 623554.0 653330.0 627583.0 670032.0 598872.0 580651.0 692163.0 654425.0 False True 563226.2383190673 719885.1051983752 711344.9831714706 736041.5110125666 707501.9750741282 623714.2649256735 569902.2734467951 623982.1261060339 521588.70315901993 612659.0362185686 0.9193143412939625 1.1750175262926397 1.1610780893105042 1.2013884844587208 1.1548054190809716 1.0180446676757429 0.9302111611122637 1.0184818785296195 0.851352338452968 1.0 19.22472486709365 2.5667227288468197 3.714080385364582 0.9587453949545363 1.1312671070283586 0.4799267778200845 0.08434181326318599 0.2070403287540188 5.311243533878613 0.02851284870382514 0.026162836739236407 368.7421035384346 -2.5667227288468197 0.1725217120738224 YLELLGYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLELLGYR 8 0 D6REX3;O94979-8;O94979;O94979-2;O94979-3;O94979-9;O94979-10;O94979-6;O94979-4;D6RHZ5;O94979-7;H7BXG7;O94979-5;H0YAB3;H0Y8V7;H0Y9K1 D6REX3 SEC31A Protein transport protein Sec31A 0 ; 140.98 0.0014908 207870000.0 311130.0 359760.0 350900.0 291690.0 241450.0 263080.0 317180.0 248210.0 442940.0 294370.0 False True 309454.91064979305 371734.3941204873 400303.669922524 328617.92409235047 272197.226313728 244893.89882370704 301836.7916547348 266732.69058484177 333783.3720919146 275583.0545771639 1.1229097925654385 1.348901494291264 1.452569972187597 1.1924460471510476 0.987713946096465 0.8886391770330574 1.0952661516792201 0.9678849484925641 1.211189754043656 1.0 18.072127654826282 3.4169388925558435 4.286199766741961 1.0195991306084944 1.3145596114317046 0.5741231366784503 0.11022697772596488 0.14011594787663217 5.2426997546863845 0.030649346915639822 0.042933363770349633 2611.793835857249 -3.4169388925558435 0.29496048082321025 YLEQLHQLYSDSFPMELR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLEQLHQLYSDSFPMELR 18 0 P40763;P40763-2;P40763-3;K7EP08 P40763 STAT3 Signal transducer and activator of transcription 3 0 ; 150.29 5.6015e-08 332530000.0 194480.0 224270.0 232150.0 256910.0 215224.0 246890.0 233100.0 193573.0 251620.0 233950.0 False True 193432.94128875935 231734.6913759219 264834.70211602695 289434.77965842426 242631.50066740817 229823.07541654637 221824.0624715261 208018.40020377698 189611.62253525885 219019.1107053278 0.8831783704436983 1.058056945942502 1.2091853595019855 1.3215046793237826 1.1078097243936347 1.0493288675879724 1.0128068813591893 0.9497728281969359 0.8657309488867649 1.0 17.740697233381557 2.2023830991326654 1.6567970497784938 0.9343212393591555 1.1264038991264844 0.3268927974514477 0.109457243479591 0.45234596207598143 2.4424699428873926 0.06540693844062183 0.038805147564301604 159.36138632466367 -2.2023830991326654 0.19208265976732897 YLEYER ddPTM_BT-474_Trastuzumab_2h_R1 2 YLEYER 6 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 0 ; 118.01 0.05172 581090000.0 420670.0 519680.0 459750.0 509050.0 428900.0 486370.0 489260.0 401850.0 541900.0 498790.0 False True 418405.1594608312 536977.2346468066 524478.8037813635 573495.6778059283 483517.87271053164 452748.3866918286 465592.62464529806 431838.08755295357 408356.006087977 466956.7951643962 0.8960254220383024 1.1499505740306426 1.1231848625239862 1.2281557603290132 1.0354659739779672 0.9695723274193593 0.9970785937088295 0.9247923834172308 0.8745049013457695 1.0 18.832929546244205 2.861556796536861 3.25752569767225 0.9492297099080943 1.1066262993272888 0.3865480390607057 0.08586073227194875 0.25019999094010664 4.99040348158274 0.02747963050676629 0.029452810186670758 727.0374741284865 -2.861556796536861 0.15739658941919454 YLFDLPLKVLVVS(ph)NNK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLFDLPLKVLVVSNNK 16 1 Q5VUJ6-2;Q5VUJ6 Q5VUJ6-2 LRCH2 Leucine-rich repeat and calponin homology domain-containing protein 2 1 Y(0.009)LFDLPLKVLVVS(0.991)NNK 56.147 0.077905 367720000.0 269450.0 320400.0 361390.0 354700.0 244310.0 335910.0 400030.0 271400.0 420420.0 345910.0 True False 267999.3111387091 331064.32031411026 412270.57074180874 399604.9836317897 275421.4303611798 312689.33234708617 380679.0206369993 291653.2461412754 316813.12433937547 323833.72765154985 0.8275830719741476 1.0223281024956754 1.2730933671782894 1.233981977509677 0.8505026093438222 0.9655860574335999 1.1755385190964909 0.9006265291029193 0.9783203455579258 1.0 18.30489372623422 3.2369370978339758 24.99992791647944 0.9814628514328382 1.0975986258275416 0.13301347420401288 0.1378147220350566 92.43354788293749 1423356.9895837752 0.04127185051267007 0.051863264042826575 1725.5879438909117 -3.2369370978339758 0.11613577439470346 YLFLGDYVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLFLGDYVDR 10 0 P16298-3;P16298;P16298-4;G3V111;Q5F2F8;P48454-2;P48454;P16298-2;P48454-3;H0YB02;Q08209-3;Q08209-2;Q08209;E7ETC2;Q08209-5;E9PPC8;E9PK68 P16298-3;Q08209-3 PPP3CB;PPP3CC;PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 0 ; 107.57 0.0074001000000000015 0.0 223550.0 253069.0 257291.0 226159.0 221175.0 233564.0 252995.0 194974.0 298554.0 272187.0 False True 222346.43163873962 261492.24868155908 293515.3363865373 254790.706211395 249340.32524306793 217418.27043051686 240756.66531524557 209523.94993791086 224979.36711863807 254815.79262898557 0.8725771246151856 1.0262011078029787 1.151872626724901 0.9999015507738679 0.9785120563783503 0.8532370312976642 0.9448263109256724 0.8222565319684871 0.8829098259471317 1.0 17.959095168206336 2.948106600285477 3.111255902330637 0.8879936536905564 1.0225772099481567 0.305927837833908 0.07835734553530357 0.2708908382962298 5.222512791810063 0.024931841348171092 0.02790420593661853 887.3737967337551 -2.948106600285477 0.13458355625760032 YLFRPEEIELLICGSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLFRPEEIELLICGSR 16 1 A0A1B0GVL3;Q05086-2;Q05086-3;Q05086;A0A0D9SG77;S4R306 A0A1B0GVL3 UBE3A Ubiquitin-protein ligase E3A 0 119.96 0.00014016 143430000.0 64432.0 78192.0 87197.0 97884.0 67887.0 80769.0 93217.0 77655.0 90501.0 81733.0 False True 64085.105271068154 80794.57345193785 99473.57967008908 110276.10436372735 76532.00705222622 75185.6291397749 88707.73758647892 83450.01042410007 68198.24120126964 76516.7299648582 0.837530632849842 1.0559072962088727 1.3000239256927768 1.4412025241326154 1.0001996568250504 0.9826037936318681 1.1593247336526231 1.0906113011157967 0.8912853598499442 1.0 16.223487599230747 YLGDAFGS(ph)PQTDHGFETDPDPFLLDEPAPR ddPTM_BT-474_Trastuzumab_2h_R1 5 YLGDAFGSPQTDHGFETDPDPFLLDEPAPR 30 0 Q9H8N7 Q9H8N7 ZNF395 Zinc finger protein 395 1 YLGDAFGS(0.957)PQT(0.043)DHGFETDPDPFLLDEPAPR;YLGDAFGS(0.97)PQT(0.03)DHGFETDPDPFLLDEPAPR;YLGDAFGS(0.956)PQT(0.044)DHGFETDPDPFLLDEPAPR;YLGDAFGS(0.979)PQT(0.021)DHGFETDPDPFLLDEPAPR;YLGDAFGS(0.962)PQT(0.038)DHGFETDPDPFLLDEPAPR 238.21 1.0644999999999999e-45 718553000.0 346140.0 393389.0 382627.0 396814.0 365932.0 463527.0 426664.0 369324.0 442846.0 436068.0 True False 344276.42069976963 406482.71505632735 436497.5557464964 447050.6117137438 412531.27115110785 431484.4695151909 406024.6323052388 396884.8322692725 333712.537132379 408237.7669034027 0.8433232998289264 0.9957009076833143 1.0692238473119529 1.095074116010254 1.0105171657200474 1.0569440274674264 0.9945788097584622 0.9721903862049673 0.8174465083514484 1.0 18.639050129624348 1.5154695038611532 3.8663191582577228 0.904575237382809 1.0154748958507154 0.2039088461415023 0.07663726033238505 0.2615229249546048 8.42654910260869 0.04983075134325302 0.019837804747740304 32.76947652856728 -1.5154695038611532 0.11089965846790639 YLGEGPR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLGEGPR 7 0 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 ;; 97.596 0.02764 543490000.0 461462.0 585650.0 573410.0 599310.0 575800.0 574200.0 601550.0 469467.0 656200.0 589870.0 False True 458977.53986524825 605143.0062170983 654141.1438309328 675182.5845513621 649124.7169660161 534506.9055214097 572450.7283558409 504501.0114451227 494488.3026295089 552223.9915868861 0.8311437874082901 1.0958288945001151 1.1845576320419813 1.2226607225288035 1.1754735883543803 0.967916848352488 1.0366277761870335 0.9135803933388962 0.8954487855707494 1.0 19.074894042173614 2.7158787647739153 19.098943154720285 0.9599780189219184 1.112891010595342 0.2943492444158108 0.1070660649526381 50.64182383619832 42640.901555782686 0.03632942664411581 0.034324569627627824 519.8508576094796 -2.7158787647739153 0.15291299167342365 YLGGS(ph)MDLSTFDFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLGGSMDLSTFDFR 14 0 O95983-2;O95983 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 YLGGS(1)MDLSTFDFR;YLGGS(1)MDLSTFDFR 130.24 6.6345e-05 47048000.0 79917.0 39164.0 35205.0 44259.0 41857.0 45044.0 31252.0 33854.0 59949.0 41547.0 True False 79486.73575161338 40467.55006486208 40161.557992654445 49862.18486202247 47187.24084412383 41930.21430217068 29740.221365766338 36380.35738712874 45175.372225444095 38895.434889823766 2.0436006430258358 1.0404190152261192 1.0325519718809453 1.2819546819122452 1.213181983381537 1.078024051432856 0.7646198442056059 0.935337462871432 1.1614569255597487 1.0 15.247313217323994 4.738806201872495 24.99998386561653 1.0474595106431435 2.0436009391254597 0.8206951649079987 0.13837462485994179 8.791367533063426 894447.7088712122 0.037204385398214135 0.2177954279500828 54803.235820891474 -4.738806201872495 0.9961414284823162 YLGQDYEQLR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLGQDYEQLR 10 0 P07384;E9PRM1;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PLX0;E9PIA9 P07384 CAPN1 Calpain-1 catalytic subunit 0 ;;; 168.26 1.1613e-05 2166410000.0 1662220.0 2050690.0 2522990.0 1938150.0 1090430.0 1448500.0 1968320.0 1238620.0 2796080.0 1700390.0 False True 1653270.792210002 2118945.9769817195 2878205.061777795 2183519.591277001 1229289.7970150253 1348368.6044022324 1873104.8418874075 1331052.1139849173 2107023.5495524467 1591869.6544228806 1.038571711959282 1.3311052014179678 1.8080657884148592 1.371669838174419 0.7722301845503138 0.8470345550315 1.1766697334063363 0.8361564719113133 1.3236156262532255 1.0 20.602290779190398 3.325374540777718 7.513323301331561 0.9811068055483998 1.4179775930546792 0.40559804474602457 0.23305256810514063 0.2196096233934226 16.323373764319093 0.06512896070556817 0.0881963005303125 2115.3125243552163 -3.325374540777718 0.4368707875062794 YLGS(ph)PITTVPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLGSPITTVPK 11 0 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;A0A3B3IT42 P30307-4 CDC25C M-phase inducer phosphatase 3 1 YLGS(0.991)PIT(0.008)T(0.001)VPK 90.689 0.011853 79499000.0 126940.0 145000.0 119020.0 112190.0 105210.0 154700.0 161640.0 124060.0 161540.0 136120.0 True False 126256.56914435985 149826.2373456492 135776.98145961468 126393.24249690017 118607.86987147346 144005.9531246292 153820.85567523594 133317.9871639153 121730.63152510017 127432.7050618049 0.9907705332247744 1.1757282973235437 1.0654798655789564 0.9918430471643792 0.9307490554638121 1.1300549027409115 1.2070751821569885 1.0461834510948822 0.9552542376469273 1.0 16.959376061098894 1.364116915664718 6.134204261712843 0.9800057153936855 1.0727900460911741 0.16489902571902293 0.08159631870974646 0.3822499755872217 18.02508852938928 0.05927611772302078 0.021347512892043133 23.126873009190547 -1.364116915664718 0.09278433069748859 YLHDESGLNR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLHDESGLNR 10 0 Q15019-2;Q15019-3;Q15019;B5MCX3;C9J2Q4;C9J938;C9JB25;C9IY94;H7C310 Q15019-2 SEPT2 Septin-2 0 ;;; 260.04 2.6802999999999998e-17 3674860000.0 1980420.0 2221930.0 2214900.0 2074450.0 1976540.0 2275380.0 2099720.0 1829140.0 2372670.0 2248430.0 False True 1969757.6387653493 2295885.5968649527 2526738.6677440815 2337075.157301848 2228240.6531295753 2118088.3362683835 1998148.5218906614 1965639.7149847194 1787957.270649124 2104933.272422231 0.9357815112583927 1.0907165689974512 1.2003889628465336 1.1102846764413021 1.058580185093207 1.0062496346171652 0.9492692942191522 0.9338251909158047 0.849412802806642 1.0 21.005343069090245 2.484222323521656 1.641344299894951 0.9228199274325942 1.0916259426466652 0.49579984143049916 0.06955886717956661 0.30309025887172747 1.6550526797264042 0.03253617398715265 0.025427899297354097 304.945566389043 -2.484222323521656 0.16880601521407101 YLHDESGLNRR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLHDESGLNRR 11 1 Q15019-2;Q15019-3;Q15019;B5MCX3;C9J2Q4;C9J938;C9JB25;C9IY94;H7C310 Q15019-2 SEPT2 Septin-2 0 ;;; 214.82 8.6128e-12 1646460000.0 683765.0 910610.0 875790.0 897910.0 818190.0 862170.0 874810.0 747358.0 1026370.0 911020.0 False True 680083.685213433 940919.1033746307 999093.6194968554 1011585.3139352138 922381.6467079263 802570.2172298759 832492.0982012684 803129.648967028 773434.8661533808 852877.9236365382 0.797398626891012 1.1032283487450334 1.1714380121798398 1.186084533202562 1.0814931670115637 0.9410141768095507 0.9760976045102119 0.9416701109375756 0.9068529559958305 1.0 19.701979731141062 2.741600597668624 22.952737223520348 0.95084589628048 1.0822044025609299 0.23222112792025917 0.10270373598313208 117.41399612711638 886511.7342825071 0.03273666312575453 0.03334709607879843 551.5699503213945 -2.741600597668624 0.13135850628044987 YLIATSEQPIAALHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLIATSEQPIAALHR 15 0 P49591;Q5T5C7 P49591;Q5T5C7 SARS Serine--tRNA ligase, cytoplasmic 0 ; 196.33 8.9822e-09 2309400000.0 1315530.0 1654130.0 1491590.0 1512430.0 1375370.0 1611520.0 1503710.0 1327020.0 1688360.0 1433190.0 False True 1308447.3326491234 1709186.717107301 1701592.906867304 1703903.4829270595 1550515.2170433279 1500119.415510038 1430969.802569963 1426048.9708710236 1272286.3008649137 1341722.5871843083 0.9751996017261547 1.2738748929420203 1.2682151460520663 1.26993724276701 1.1556153498892676 1.1180548273083302 1.066516891224844 1.0628493434426558 0.9482484032223747 1.0 20.35565498194623 2.171068003416519 1.0607720264764053 0.9917688520870259 1.2046809615099123 0.48007839744038683 0.08532043018640939 0.44434389322068124 0.9431648836866411 0.061992370704309914 0.03302746936616889 148.27502414190502 -2.171068003416519 0.2129121094228864 YLLDRDDPSDALSK ddPTM_BT-474_Trastuzumab_2h_R1 2 YLLDRDDPSDALSK 14 1 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 0 ; 73.415 0.032741 2122300000.0 1519180.0 2323000.0 2180620.0 2397600.0 2234680.0 1836950.0 1901760.0 1577160.0 1560260.0 1841680.0 False True 1511000.903676765 2400319.650716843 2487632.3417111808 2701135.914168536 2519253.252013923 1709965.9702151758 1809764.603371299 1694855.6878562053 1175754.8294128585 1724142.4056584237 0.8763782496839273 1.3921817843116024 1.4428230136600533 1.56665476430702 1.4611630940379654 0.9917776887821316 1.0496607457898337 0.9830137477588261 0.6819360312432288 1.0 20.717447508166774 2.681079468216211 6.010667851933405 0.9497565848827384 1.3674592625639668 0.5181738979223448 0.19558955800608313 0.18552793313191523 14.548445954724349 0.06539560563933346 0.061937208668807794 479.821239412742 -2.681079468216211 0.4177026776812284 YLLEGTAETHELAEGSTADVLHSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLLEGTAETHELAEGSTADVLHSR 24 0 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2;A0A3B3IU50 Q709C8-3 VPS13C Vacuolar protein sorting-associated protein 13C 0 161.53 1.1089000000000002e-11 117290000.0 30792.0 47183.0 29959.0 42593.0 39338.0 38050.0 41814.0 32619.0 38907.0 30947.0 False True 30626.21929331283 48753.45763227421 34176.966791703846 47985.26943284129 44347.46112540657 35419.693060065605 39791.29707500813 35053.19541592583 29318.891177089747 28971.9359649403 1.0570995093449889 1.6827821824289562 1.1796576809041097 1.6562672750246832 1.5307040985825935 1.2225518205938293 1.3734428076591298 1.2099017289816125 1.0119755618875212 1.0 14.822368471258192 1.5003550389354756 1.2570814004517958 0.9772756636522155 1.415327373166575 0.3884915275765424 0.1902747391477168 0.39615153523110924 1.200993854657651 0.15818838668208937 0.054319202586948404 31.648639024227514 -1.5003550389354756 0.43805170951435946 YLLGDAPVS(ph)PSSQK ddPTM_BT-474_Trastuzumab_2h_R1 8 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 YLLGDAPVS(0.998)PS(0.002)SQK;YLLGDAPVS(0.998)PS(0.001)SQK;YLLGDAPVS(0.888)PS(0.112)SQK;YLLGDAPVS(0.858)PS(0.124)S(0.018)QK;YLLGDAPVS(0.993)PS(0.007)SQK;YLLGDAPVS(0.995)PS(0.005)SQK;YLLGDAPVS(0.859)PS(0.139)S(0.002)QK;YLLGDAPVS(0.993)PS(0.007)SQK 311.33 1.0349999999999999e-55 17150941000.0 13801400.0 12350260.0 11844390.0 11208070.0 11371450.0 14171650.0 14289990.0 13653500.0 18654430.0 14340330.0 True False 13727094.7958797 12761330.938210186 13511977.158716545 12627010.512810687 12819536.753635295 13191997.191975785 13598728.590636984 14672393.501068192 14057295.683055444 13425117.862025794 1.0224934288814012 0.9505563429209667 1.006469909432709 0.9405511849193795 0.9548919335670458 0.982635484288044 1.0129317843161931 1.0929061220810905 1.0470891821976345 1.0 23.678431418210955 2.0452450302265754 3.6394296123449963 1.0565654080417712 0.9741159099278619 0.48440487180314284 0.03200601067434498 0.15643698861835914 4.280850619221243 0.013243111578710621 0.008676574442454241 110.98007915341842 -2.0452450302265754 -0.08244949811390934 YLLGDAPVSPS(ph)SQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 YLLGDAPVS(0.169)PS(0.831)SQK;YLLGDAPVS(0.314)PS(0.681)S(0.005)QK 336.06 1.3526999999999991e-68 10354900000.0 5804400.0 5346900.0 4904000.0 4909100.0 4634900.0 5947200.0 6094000.0 5818700.0 7368000.0 5814100.0 True False 5773149.755329459 5524868.3342307005 5594440.573667871 5530591.556658638 5225127.041795388 5536084.062202949 5799209.938659295 6252920.940759904 5552255.126141749 5443039.160298554 1.0606482123881684 1.0150337286802944 1.0278156024438767 1.0160852041996482 0.9599649916001681 1.0170942922077546 1.0654360124686675 1.1487922016745011 1.0200652544702993 1.0 22.37598098498764 2.193832089892176 4.826603928431922 1.0803743709463358 1.0138534681317644 0.11282357437402402 0.04487980307618676 0.23809064573340916 12.237251905467563 0.017082658240887942 0.012708443488067345 156.25434038859402 -2.193832089892176 -0.06652090281457146 YLLGDMEGR ddPTM_BT-474_Trastuzumab_2h_R1 5 YLLGDMEGR 9 0 Q16531;F5GY55 Q16531 DDB1 DNA damage-binding protein 1 0 ;;;; 146.58 0.0002197 1846730000.0 1217640.0 1596070.0 1506260.0 1485180.0 1374550.0 1501340.0 1574290.0 1351230.0 1706370.0 1429740.0 False True 1211084.3615325226 1649194.2251053108 1718328.3153533791 1673203.6357210644 1549590.7949038506 1397555.8995742155 1498135.5783281801 1452065.6440069126 1285857.9776865516 1338492.7691380014 0.9048120314557018 1.2321278553991766 1.2837785567269029 1.250065502257901 1.1577132358374995 1.0441265965704478 1.119270580216126 1.0848513174576602 0.9606760733676978 1.0 20.352177914536018 1.8316425959281268 0.8646156173444474 0.9876722832537647 1.1740463782406663 0.26825724246046523 0.10412777566657748 0.7731854580299286 1.0805662717243465 0.09283721629782844 0.041896851312305694 67.86449096874219 -1.8316425959281268 0.1863740949869016 YLLHGLECVVAMHQAQLISK ddPTM_BT-474_Trastuzumab_2h_R1 2 YLLHGLECVVAMHQAQLISK 20 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 ; 212.79 7.983700000000001e-23 320280000.0 230489.0 235583.0 243168.0 222909.0 227870.0 292130.0 294050.0 241104.0 352050.0 290404.0 False True 229248.07283373555 243424.23774206918 277403.9407458538 251129.25654462512 256887.89380869383 271935.7407000517 279825.67811991513 259096.4047813046 265291.99472831236 271870.16809262696 0.843226288643887 0.8953694311143907 1.020354468061172 0.9237102338461226 0.9448918048307947 1.000241190888595 1.0292621661401913 0.9530152079540763 0.9758039897850308 1.0 18.05255832971266 4.418277896897003 4.790136398221995 0.9776778249775484 0.8538430183841603 0.6705148571946191 0.0321117717790044 0.10441565517635693 4.779840075530519 0.00802512139620318 0.02458364451857151 26198.588705606348 -4.418277896897003 -0.12383480659338808 YLLLTYYDANK ddPTM_BT-474_Trastuzumab_2h_R1 2 YLLLTYYDANK 11 0 A0A087WX87;A0A1W2PS33;A0A087X037;A6QL64-4;A6QL64-5;Q8N2N9-4;Q8N2N9-3;Q8N2N9-2;Q8N2N9;A6QL64 A0A087WX87 ANKRD36B;ANKRD36 Ankyrin repeat domain-containing protein 36A;Ankyrin repeat domain-containing protein 36B 0 ; 81.296 0.051324 583560000.0 958850.0 916640.0 828330.0 845860.0 865100.0 985050.0 982770.0 920790.0 1263960.0 1007750.0 False True 953687.6581382509 947149.8082794196 944951.6640265724 952945.7892720207 975265.3571505739 916955.8120582805 935229.6605540195 989504.0254768784 952473.9941962712 943434.532221818 1.0108678721906506 1.0039380327205663 1.0016080944177244 1.0100815231214861 1.0337393044685288 0.9719336962352021 0.9913031891587901 1.048831680081251 1.009581440646618 1.0 19.84756288275969 1.7618241551626488 24.999999999999986 1.0244127959738842 1.0035275022499586 0.11669626441317604 0.018903122859997557 20.344168493482545 21879.15691835209 0.00869624502905948 0.004823307402602446 57.786202502583 -1.7618241551626488 -0.02088529372392567 YLLSQSS(ph)PAPLTAAEEELR ddPTM_BT-474_Trastuzumab_2h_R1 5 YLLSQSSPAPLTAAEEELR 19 0 Q12792;Q12792-3;Q12792-4;F8VS81 Q12792 TWF1 Twinfilin-1 1 YLLSQS(0.069)S(0.93)PAPLT(0.001)AAEEELR;YLLSQS(0.003)S(0.997)PAPLTAAEEELR;YLLSQS(0.01)S(0.99)PAPLTAAEEELR;YLLSQS(0.017)S(0.983)PAPLTAAEEELR;YLLSQS(0.003)S(0.997)PAPLTAAEEELR 221.91 2.6818000000000003e-19 306507000.0 394368.0 469898.0 428907.0 465816.0 446124.0 438241.0 388698.0 353233.0 435977.0 375715.0 True False 392244.76650640427 485538.27087066084 489293.3774735252 524788.2578388096 502935.2470158858 407946.43117834977 369895.19276944373 379593.04014082946 328536.3101424948 351736.54703420517 1.1151663647515702 1.380403244884996 1.3910791517093704 1.491992408135444 1.4298634908898933 1.1598067775956145 1.0516257007932495 1.079197039208767 0.9340408692604405 1.0 18.4241357197943 2.5139282344081795 3.0045621041092936 1.0304423187019691 1.3708871430520284 0.7282481106723162 0.09934775691024421 0.14282628836005204 2.6002033150115924 0.037169057533698244 0.032684008526644354 326.5338691734095 -2.5139282344081795 0.3404448243500593 YLMAS(ph)DPNLQVLGAAYIQHK ddPTM_BT-474_Trastuzumab_2h_R1 6 YLMASDPNLQVLGAAYIQHK 20 0 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 YLMAS(1)DPNLQVLGAAYIQHK;YLMAS(1)DPNLQVLGAAYIQHK;YLMAS(1)DPNLQVLGAAYIQHK;YLMAS(1)DPNLQVLGAAYIQHK;YLMAS(1)DPNLQVLGAAYIQHK;YLMAS(1)DPNLQVLGAAYIQHK 296.45 7.977099999999996e-55 8365539000.0 5502857.0 5470789.0 5074492.0 5039262.0 5367888.0 6170347.0 5709239.0 5629098.0 7355755.0 6345969.0 True False 5473230.229336891 5652880.904703213 5788936.365324839 5677232.0525128255 6051456.718835131 5743805.435324487 5433061.298159051 6049169.8767404705 5543027.742317155 5940963.825362592 0.9212697451499541 0.951509059955975 0.9744103036970648 0.9556079147084067 1.0185984794253138 0.9668137366539054 0.9145083959213398 1.0182135516321333 0.9330182618943736 1.0 22.5022655732915 4.668315905709112 1.6879981469817724 0.9738430386692094 0.9069830783867847 0.19852889658947614 0.03199754880115543 1.2854105115244152 4.023290339625926 0.008091044838538668 0.13330793647292152 46592.488394647335 -4.668315905709112 -0.06685996028242469 YLMDEGAHLHIYDPK ddPTM_BT-474_Trastuzumab_2h_R1 4 YLMDEGAHLHIYDPK 15 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 ;;; 148.91 1.9947e-06 669380000.0 963510.0 922570.0 866340.0 854070.0 851110.0 1078880.0 999510.0 115552.0 1487340.0 649630.0 False True 958322.5692160251 953277.1847446583 988313.1416377289 962195.1744302304 959493.8135757989 1004299.5650103434 951159.8828010097 124175.07700116684 1120804.9863349185 608170.0572237761 1.5757477005537783 1.5674516912198129 1.6250605071700845 1.5821153360008167 1.5776735506443278 1.6513466144565738 1.563970260461262 0.20417821549454648 1.8429137919930814 1.0 19.21411526259413 1.9477969871757752 24.990758894265884 0.9164724786474144 1.5960755098006234 0.32664615584314527 0.37125389663915914 302.78110018519135 144947.5644356554 0.14289126997705628 0.09222115270444918 88.67414040556187 -1.9477969871757752 0.679603031153209 YLMEEDEDAYKK ddPTM_BT-474_Trastuzumab_2h_R1 10 YLMEEDEDAYKK 12 1 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 ;;;;;;;;; 229.54 1.2724e-11 24796920000.0 23033790.0 17691330.0 14948970.0 13855550.0 14052520.0 22196640.0 21689950.0 20808140.0 34642320.0 22247410.0 False True 22909778.633934636 18280175.224415172 17053655.037223466 15609661.209358446 15842025.126188396 20662238.5220703 20640724.254844606 22360949.06839399 26105184.4193055 20827561.24683404 1.0999741334294293 0.8776915841356082 0.818802299276194 0.7494713867055003 0.7606279457512825 0.9920623099937411 0.9910293389717995 1.073623013438169 1.2533961182456588 1.0 24.31199058457529 2.1239564659613155 1.595693348123114 1.1183091492177701 0.8585295910290045 0.46412206144997326 0.11172383699462424 0.3399138739084413 1.6590508217732431 0.06882133729672746 0.03739988377330919 133.0321058809063 -2.1239564659613155 -0.25977955818876564 YLNEYGAPDAGGLEHVPLGWSYWYALEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLNEYGAPDAGGLEHVPLGWSYWYALEK 28 0 H7C3P4;F6S8M0;P15586-2;P15586;F5H4C6 H7C3P4 GNS N-acetylglucosamine-6-sulfatase 0 170.44 3.7836e-12 244940000.0 153980.0 180790.0 150620.0 157570.0 162080.0 173320.0 185680.0 165450.0 190640.0 150560.0 False True 153150.98878878623 186807.48586013695 171825.9867874906 177518.3458439838 182719.92727657466 161338.79635139467 176697.9490335176 177796.71913807682 143659.32644512254 140951.1318990988 1.0865538057432615 1.3253351239056728 1.2190465196866518 1.2594318573550867 1.2963352958908938 1.1446434957818612 1.2536114230001962 1.2614068205238271 1.0192137126501575 1.0 17.10483553786242 1.233022722833904 24.340553317379502 1.0096065745355443 1.2361379041560663 0.6379802110211048 0.06655047117040966 56.9408466705558 250252.01373782076 0.052877159645473744 0.014727965093092094 17.10104787584465 -1.233022722833904 0.22653132962052203 YLNFFTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLNFFTK 7 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 100.15 0.023278 106200000.0 195320.0 244800.0 223590.0 208110.0 183030.0 224880.0 171080.0 180640.0 315060.0 232280.0 False True 194268.41882209203 252948.02001527473 255069.52852088056 234456.70466200073 206337.78559619613 209334.57491057934 162804.2068109341 194120.27407133408 237417.68458770658 217455.69153508684 0.8933701272691063 1.1632163694113342 1.1729724189800048 1.0781815045028185 0.9488727755966929 0.9626539247274788 0.7486776072019498 0.8926888631931368 1.0917979792191315 1.0 17.730361943836574 3.185353916885946 3.2498923708561165 0.9164295992769704 1.0922135538586726 0.2562170534174706 0.10940586764212226 0.27882893867161296 5.997074957367297 0.03324663220455481 0.042286699217634345 1532.3356897476228 -3.185353916885946 0.17578395458170215 YLPDTLLLEECGLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLPDTLLLEECGLLR 15 0 P21964-2;P21964;E7EMS6 P21964-2 COMT Catechol O-methyltransferase 0 ;; 224.66 2.5675e-12 227461000.0 77887.0 87873.0 98126.0 94579.0 76993.0 88173.0 102831.0 79669.0 99597.0 100607.0 False True 77467.66504605928 90797.79968464984 111941.28787351833 106552.69170259679 86797.6021767357 82077.80804691624 97856.67167743237 85614.30533098493 75052.65388142514 94186.17512601386 0.8224950736391355 0.9640247049332811 1.1885108161972764 1.13129863868065 0.9215535301291 0.8714422040931427 1.0389706509103664 0.9089901486756372 0.7968542493737586 1.0 16.523227692669224 3.1912620600761676 24.358399794068895 0.9234455114125979 1.0336802938969112 0.17429586568899802 0.11004627116941881 162.32026687543174 83592.86277996244 0.03348166901502362 0.040018389289303666 1553.3240272127036 -3.1912620600761676 0.11023478248431329 YLPENDLKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLPENDLKR 9 1 O00743;O00743-2 O00743 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed 0 ; 121.6 0.00097687 1070290000.0 778930.0 657180.0 539430.0 499990.0 498530.0 641770.0 587820.0 400780.0 943930.0 600570.0 False True 774736.3274272582 679053.8390263016 615377.055190388 563288.6827348707 562014.8404811868 597405.9504640817 559384.900909535 430688.2387196036 711311.0995139781 562241.1084261548 1.3779432272320455 1.2077626997555073 1.094507402550079 1.0018632118730135 0.9995975606522236 1.062544060743551 0.9949199596510917 0.7660205421926571 1.2651353464799209 1.0 19.100829415089216 4.773948079840927 0.8845251561683339 0.9815423222037243 1.628133128895629 0.49481036298223746 0.11561430401377833 1.8305163015935495 1.0708422260153667 0.038742638223587415 1.1677093044427225 59422.11148875046 -4.773948079840927 0.6465908066919046 YLPHSAGR ddPTM_BT-474_Trastuzumab_2h_R1 7 YLPHSAGR 8 0 M0R0F0;M0R0R2;P46782 M0R0F0 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed 0 ;;;;;; 160.75 0.00035156 5750260000.0 4082900.0 6036370.0 6215460.0 6121330.0 5330590.0 5511050.0 6305120.0 5241800.0 7067590.0 5699580.0 False True 4060918.120052831 6237286.926387275 7090542.742253207 6896289.750365897 6009409.039617698 5130084.085116284 6000117.257702564 5632969.733321062 5325877.145353987 5335827.924744068 0.7610661695481141 1.1689445413827593 1.328855210898373 1.2924498030353324 1.12623741327002 0.9614410654673329 1.124496018673683 1.0556880418124142 0.9981351011444849 1.0 22.34728071108631 2.9836505956796846 23.88968127581 1.0416461455821455 1.160652121898297 0.10464854146158042 0.14917183013759597 900.516350801831 1315834.0609507714 0.04639554288131609 0.05051118061606151 963.0539030421326 -2.9836505956796846 0.11900597631615151 YLQDLLAWVEENQHR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLQDLLAWVEENQHR 15 0 Q15149-3;Q15149-2;Q15149;Q15149-6;Q15149-7;Q15149-9;H0YDN1;E9PMV1;Q15149-4;Q15149-5;Q15149-8 Q15149-3;Q15149-4;Q15149-5;Q15149-8 PLEC Plectin 0 ;; 193.47 9.1451e-08 6692662000.0 954334.0 1175989.0 1087939.0 1183491.0 1175516.0 1198391.0 1241318.0 1071434.0 1279712.0 1245119.0 False True 949195.9717804746 1215131.082964637 1241111.3546646908 1333320.8392539353 1325210.9947707944 1115549.0508789753 1181270.706044743 1151389.8457116112 964344.1248622574 1165654.4394199944 0.8143030555889059 1.0424453782111114 1.0647335202379895 1.14383885495033 1.1368815233356742 0.9570152295169481 1.0133969949383275 0.987762587928305 0.8272984619198939 1.0 20.15270873142676 1.495979216267317 3.8711489701010726 0.9108169288689304 1.032269827938702 0.16299239353134398 0.09677398555720777 0.3185857990400411 9.970313546871589 0.06564469715666643 0.025475236374655777 31.331357804009887 -1.495979216267317 0.12145289906977152 YLQEFAPLGTGGGLYHFR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLQEFAPLGTGGGLYHFR 18 0 C9JAH0;F8WD54;A0A087WUI8;Q96IJ6;Q96IJ6-2;C9J255 C9JAH0 GMPPA Mannose-1-phosphate guanyltransferase alpha 0 179.1 8.539600000000002e-14 247260000.0 140830.0 175200.0 151380.0 160190.0 147120.0 169400.0 150710.0 154500.0 219660.0 165200.0 False True 140071.78692768398 181031.42608936338 172692.98818145238 180470.03757534942 165854.85995144173 157689.77672470707 143419.5815318907 166029.57453510363 165527.7362932001 154656.79456516445 0.905694362291111 1.1705365199010769 1.1166207644933983 1.166906621094546 1.0724059063668165 1.0196110501841849 0.9273409676899842 1.0735355986260744 1.0702907477075325 1.0 17.238710691440694 2.855779707657299 4.212365020738204 1.0194857760092637 1.0995930222904846 0.1548537809693037 0.0787305904857419 0.4015524674474523 11.967472857969257 0.02431987113703824 0.025951938987081365 717.4302882833805 -2.855779707657299 0.0801072462812209 YLQLAEELIRPER ddPTM_BT-474_Trastuzumab_2h_R1 5 YLQLAEELIRPER 13 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 ;;;; 236.3 9.4546e-17 1399601000.0 952646.0 1085859.0 1014418.0 1060078.0 948757.0 1185826.0 1134578.0 1025407.0 1311617.0 1150601.0 False True 947517.0597849204 1122001.1603993736 1157239.2369206804 1194283.7661077532 1069575.5802266854 1103852.639754147 1079694.127631143 1101928.0772512425 988386.5651173543 1077168.6591009237 0.8796366769302227 1.0416206885705996 1.0743342995948182 1.1087249485188155 0.9929508913854066 1.0247723329376253 1.0023445432698785 1.0229856466219363 0.9175782796561563 1.0 20.03881272876818 1.2658162051718478 24.140208334199233 0.9587891799740594 1.0225784224366434 0.13495370600244905 0.05965207225167018 233.70657944251386 206994.11867847698 0.03944504108346469 0.014395706337313243 18.442347678906852 -1.2658162051718478 0.063789242462584 YLQSLLAEVER ddPTM_BT-474_Trastuzumab_2h_R1 2 YLQSLLAEVER 11 0 O95232;J3KPP4;D6RDI2;D6RHH0;U3KQT3 O95232 LUC7L3 Luc7-like protein 3 0 ; 122.42 0.00090994 144022000.0 147198.0 169738.0 169966.0 178270.0 151137.0 176101.0 197492.0 105549.5 239703.0 163559.0 False True 146405.5023232351 175387.62672121232 193895.73542904446 200838.96372156488 170383.4010908176 163927.55236716452 187938.5574672957 113426.13965950088 180631.40750564012 153120.52459009498 0.9561455116168387 1.1454220601106648 1.2662948742378273 1.311639731245779 1.1127404477416434 1.0705785707435371 1.227389717808301 0.7407637869785496 1.1796681600274816 1.0 17.224308152047318 1.7664913738787336 24.999954198884737 0.9486220074065224 1.160665859686025 0.2627227800073543 0.13787795023576363 22.688194824976087 20319.626351605726 0.06270208897392358 0.03477544237877577 58.4105605251148 -1.7664913738787336 0.21204385227950273 YLQSLLAEVERR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLQSLLAEVERR 12 1 O95232;J3KPP4;D6RDI2;D6RHH0;U3KQT3 O95232 LUC7L3 Luc7-like protein 3 0 155.66 0.00011629 80443000.0 40510.0 60781.0 50423.0 57675.0 53466.0 48988.0 54871.0 40358.0 59688.0 53731.0 False True 40291.898661084124 62804.0588421096 57522.1201154272 64976.649086449055 60274.578182189995 45601.57486534802 52216.68010242432 43369.71889377157 44978.692178223246 50301.84157857654 0.8010024563045892 1.2485439274425638 1.1435390496702165 1.2917349951283392 1.1982578826271209 0.9065587547945689 1.0380669666110853 0.8621894851707109 0.8941758545353057 1.0 15.618323598420114 2.7355437325271605 24.90615986029673 0.9341970685398666 1.1518362751786098 0.3496565605491557 0.1330044574737089 262.0715721641403 2163544.824518237 0.0414084573393591 0.040597912538930796 543.9309016433222 -2.7355437325271605 0.21763920663874314 YLQSNSNNWR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLQSNSNNWR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 ; 207.83 2.9049e-07 238200000.0 138385.0 178239.0 196920.0 204586.0 165491.0 195265.0 190838.0 130936.0 178627.0 159997.0 False True 137639.95053601894 184171.57736724927 224644.6243406764 230486.56662332464 186565.29790799395 181766.7901543682 181606.43686804443 140707.10919953597 134606.76932916982 149785.85447967684 0.9189115421756606 1.2295658892958943 1.4997719585807519 1.5387739211021252 1.2455468412293058 1.2135110540697325 1.2124405038039494 0.9393885002580622 0.8986614243164962 1.0 17.192541859010355 1.8675324266542983 2.0431055749520013 0.9264587395800838 1.2966105725628103 0.4466968166880745 0.16236318509700842 0.2962427758458859 2.313043692027363 0.10928793005239444 0.05101996270818156 73.71102097135588 -1.8675324266542983 0.37015183298272647 YLS(ph)FTPPEK ddPTM_BT-474_Trastuzumab_2h_R1 4 YLSFTPPEK 9 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 YLS(0.999)FT(0.001)PPEK;YLS(1)FTPPEK;YLS(1)FTPPEK;YLS(1)FTPPEK 183.03 4.7875e-05 1531500000.0 3386970.0 2054340.0 1808560.0 1818930.0 2082450.0 3082750.0 2142510.0 2744220.0 4652600.0 2704940.0 True False 3368734.9298477396 2122717.4650252457 2063189.527714674 2049206.3515009072 2347637.6638518195 2869646.7485129316 2038868.606116988 2949007.6312668086 3506029.0716459155 2532308.4133843547 1.3303019932495213 0.8382539242873253 0.8147465438292655 0.8092246349891496 0.9270741476210126 1.1332137639102713 0.8051422944143288 1.1645531072281783 1.3845189839890837 1.0 21.272021692638504 1.5996747875234485 6.190987867042164 1.217320002801114 0.9427260760627859 0.25423730617863627 0.1806618483041134 0.1566344481802998 12.708497234665659 0.09479829988004229 0.044941569040333834 39.78091677901524 -1.5996747875234485 -0.27459392673832805 YLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 YLS(0.781)FT(0.219)PPEKDGFPSGTPALNAK;YLS(0.998)FT(0.002)PPEKDGFPSGTPALNAK 251.37 1.5593e-32 1932420000.0 1642190.0 945470.0 871070.0 934800.0 1057450.0 1682520.0 1192620.0 1505180.0 3071200.0 1582490.0 True False 1633348.6315044616 976939.3974013163 993709.0845238322 1053145.5841527956 1192109.9895028002 1566211.3526260576 1134928.4143491702 1617504.1747491695 2314343.911971571 1481494.1333621491 1.1025009108862882 0.6594284617139992 0.6707479038534413 0.7108671984834352 0.8046673710393901 1.057183634653786 0.7660701374318156 1.091805993911265 1.5621687996288762 1.0 20.49862148263917 1.5560148322193523 4.058480738626263 1.2956507149989922 0.8175322118562612 0.48673351139533005 0.19037242875481059 0.13205158606561443 4.868681497432212 0.11295425623949609 0.04785077072031011 35.97616216857144 -1.5560148322193523 -0.47811850314273097 YLS(ph)PAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLSPAR 6 0 Q2M2I3 Q2M2I3 FAM83E Protein FAM83E 1 YLS(1)PAR 72.485 0.089658 300080000.0 279280.0 324990.0 303540.0 298110.0 265060.0 314420.0 310130.0 267700.0 301960.0 303560.0 True False 277776.3875109248 335807.09568939626 346275.7935830228 335850.69543409295 298813.8198662941 292684.88546506787 295127.8270883502 287677.13335305656 227546.0040566996 284186.5409092085 0.9774438529784857 1.1816432073631504 1.2184806235903005 1.1817966268198115 1.051470695657465 1.029904106396701 1.0385003672029536 1.0122827507336571 0.8006924020001204 1.0 18.11647870451597 2.230303450151893 0.9163392625159107 0.928007058177751 1.1411013502106484 0.47595338299553347 0.08409818491304535 0.5091355966097186 0.8126508169519046 0.06469917777047952 0.03691566177423347 169.9430663566302 -2.230303450151893 0.21309429203289743 YLSDSCS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLSDSCSPR 9 0 P83436 P83436 COG7 Conserved oligomeric Golgi complex subunit 7 1 YLSDS(0.004)CS(0.996)PR;YLSDS(0.029)CS(0.971)PR 96.113 0.0054169 167990000.0 625640.0 691950.0 613460.0 715840.0 663800.0 656320.0 560380.0 530580.0 730880.0 603200.0 True False 622271.6237551381 714981.1374573928 699829.8357100924 806465.2706032705 748330.9953491506 610950.1432110977 533272.2785405138 570174.5738306483 550764.4172902389 564703.259574499 1.1019444517179104 1.266118311405051 1.2392877566129346 1.4281222162785778 1.3251756257136078 1.0818959034722866 0.9443407125758965 1.0096888306617389 0.9753165188124415 1.0 19.107133433289913 2.5695325246839156 3.8655657702266604 0.9863274049492662 1.277600847198837 0.7564236250703988 0.07800310613725318 0.11885290276349464 3.2438012254351136 0.02790402878672284 0.02568705555754954 371.13552310782774 -2.5695325246839156 0.29127344224957075 YLSEVASGDNK ddPTM_BT-474_Trastuzumab_2h_R1 6 YLSEVASGDNK 11 0 P31946-2;P31946 P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed 0 ;;;;; 298.58 2.4307e-35 6678950000.0 5655930.0 5591720.0 5077270.0 4756300.0 4750970.0 6149470.0 6148310.0 5684860.0 8175420.0 5835960.0 False True 5625479.101312893 5777837.019933881 5792105.483578032 5358447.092325568 5355977.868294605 5724371.613195306 5850892.756474944 6109093.120334159 6160697.286015444 5463504.036383272 1.0296467365725321 1.0575332207054964 1.0601448164047276 0.9807711418609568 0.9803191930723186 1.0477473019283652 1.0709048108159018 1.118163925504895 1.1276091762702714 1.0 22.38139509454696 2.240398556743737 2.894142716377901 1.0941892064310037 1.02325895998289 0.2789076091984657 0.04139203940069161 0.281690773091677 4.869988428057593 0.017188158576817734 0.012524262769944441 173.93963593733105 -2.240398556743737 -0.07093024644811363 YLSHSEFK ddPTM_BT-474_Trastuzumab_2h_R1 4 YLSHSEFK 8 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 ;;; 141.52 0.00063223 1025920000.0 2178840.0 2212460.0 2107890.0 2072590.0 1968420.0 2495290.0 2244350.0 2016610.0 3248340.0 2427800.0 False True 2167109.367531881 2286100.393639688 2404662.589891675 2334979.6814925624 2219086.6192605863 2322796.4755808436 2135782.2162504047 2167099.6783380904 2447830.132525967 2272855.72545585 0.9534742321126608 1.0058273246451583 1.0579917427048255 1.0273329958170807 0.9763429303527484 1.021972688176227 0.9396910645624226 0.9534699691083345 1.0769843880147842 1.0 21.116074678127784 3.23563090703332 24.99589403292701 0.9872985146180098 1.0141212825881334 0.014625611469797462 0.04334059190291286 217.57420559671934 1856326.3618810659 0.012747304358544051 0.015876850215952327 1720.4058357032882 -3.23563090703332 0.026822767970123618 YLSVPPS(ph)PNISTSES(ph)RSPPEGDTTLFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 YLS(0.003)VPPS(0.985)PNIS(0.105)T(0.098)S(0.091)ES(0.385)RS(0.33)PPEGDT(0.001)T(0.001)LFLS(0.001)R 59.496 0.021506 93397000.0 58418.0 66230.0 65542.0 77051.0 77604.0 76986.0 79805.0 74903.0 100030.0 71234.0 True False 58103.483978849974 68434.42551311958 74769.74389872343 86805.64869978305 87486.40940505503 71664.13902555076 75944.52726529441 80492.64220972724 75378.94683332778 66687.78513350441 0.8712762594008895 1.0261913088899042 1.1211909909594313 1.3016723906185226 1.3118805674819338 1.0746216699517614 1.1388071610604347 1.2070072809973589 1.1303261411729937 1.0 16.025134913956066 4.471846512556337 2.0767763181007184 1.1777196304008093 0.8613847188298869 0.503468013788436 0.09049992189928849 0.32538928894301994 2.2649640957570467 0.02346162302089412 0.15741095399848373 29637.83750179727 -4.471846512556337 -0.3163349115709224 YLSVPPS(ph)PNISTSESR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLSVPPSPNISTSESR 16 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 YLSVPPS(0.989)PNIS(0.004)T(0.006)S(0.001)ESR;YLSVPPS(0.996)PNIS(0.001)T(0.002)S(0.002)ESR;YLSVPPS(0.904)PNIS(0.012)T(0.059)S(0.02)ES(0.006)R 147.49 1.0726e-06 491780000.0 785480.0 763460.0 702190.0 697040.0 735120.0 794160.0 714240.0 684640.0 812130.0 650720.0 True False 781251.0629550325 788871.3045786837 801052.2484551063 785285.1925308795 828733.1746023926 739261.588451555 679689.4825382365 735731.3133314768 611991.4434844597 609190.4924905798 1.282441325965233 1.294950125294154 1.314945420733882 1.2890634410927264 1.360384288359864 1.213514651926362 1.1157256899388444 1.207719625307274 1.004597824536671 1.0 19.21653390059602 1.6952401749377752 0.7437663101802388 0.9951274355242765 1.3103012348107475 0.8260482399501361 0.05065563463110448 0.25052048843118385 0.2761307675701286 0.046591252437698315 0.02165729729200164 49.57242620472197 -1.6952401749377752 0.31517379928647093 YLSVPPS(ph)PNISTSESRS(ph)PPEGDTTLFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 YLS(0.021)VPPS(0.973)PNIS(0.003)T(0.003)S(0.004)ES(0.27)RS(0.725)PPEGDTTLFLSR 108.71 0.00022902 65249000.0 26318.0 29253.0 31291.0 33750.0 40057.0 34818.0 33253.0 31808.0 43763.0 35406.0 True False 26176.306812204693 30226.668421188075 35696.50081375231 38022.74653953456 45158.021513559695 32411.11361275593 31644.42535120402 34181.67447775128 32978.19504415602 33146.35876739835 0.7897189249623049 0.9119152011025119 1.0769358125955661 1.1471168464191144 1.362382572108512 0.9778182225142152 0.9546878308192458 1.0312346739989804 0.9949266305713275 1.0 15.016562773967365 4.429754738135088 2.884681298434587 1.071362089736621 0.7991290559523653 0.39475383649951423 0.11228734728802804 0.29357504423217273 4.615794755661146 0.03070992115677047 0.13322116091738753 26900.1522560359 -4.429754738135088 -0.2722330337842557 YLSVPPSPNISTSES(ph)RSPPEGDTTLFLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 YLSVPPS(0.021)PNIS(0.024)T(0.02)S(0.02)ES(0.55)RS(0.364)PPEGDTTLFLSR;YLSVPPS(0.029)PNIS(0.03)T(0.03)S(0.03)ES(0.44)RS(0.44)PPEGDTTLFLSR;YLSVPPS(0.004)PNIS(0.004)T(0.004)S(0.004)ES(0.545)RS(0.437)PPEGDTTLFLSR 102.53 0.0003609 1513380000.0 347396.0 479990.0 411290.0 523260.0 513308.0 422008.0 513319.0 468482.0 576354.0 530797.0 True False 345525.6585353241 495966.1769899175 469196.05700323364 589504.6623489428 578674.7311851187 392835.58025997784 488487.79890099267 503442.5057433935 434319.2794479235 496921.08102182514 0.6953330654131543 0.9980783587809476 0.9442063839159728 1.1863144568886812 1.1645203902301398 0.7905391726432395 0.9830289306634143 1.0131236628322515 0.8740206363449649 1.0 18.922657221477813 4.738643943127876 9.647348852120478 0.9987133837478048 0.6944196126168678 0.3920806892175207 0.11180219548929357 0.0805536216209388 205.94935271322177 0.02720981285452223 0.15841531851634716 54782.76435815021 -4.738643943127876 -0.30429377113093703 YLSVPPSPNISTSESRS(ph)PPEGDTTLFLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 YLSVPPS(0.002)PNIS(0.01)T(0.01)S(0.01)ES(0.266)RS(0.702)PPEGDTTLFLSR 119.96 3.0375e-05 521390000.0 35274.0 48074.0 41350.0 51684.0 50815.0 44789.0 47524.0 37532.0 59143.0 48147.0 True False 35084.08870330982 49674.114028653334 47171.72057935693 58227.189100720076 57285.98904589799 41692.84185196527 45225.08256068985 40332.82842363431 44568.000125597406 45074.21723927944 0.7783626838612334 1.1020516177786304 1.0465344373911756 1.291806994486831 1.2709258763561342 0.9249820497300283 1.0033470425145607 0.8948092921841514 0.9887692533628538 1.0 15.460014817522866 2.688631582541593 24.979126537205907 0.9543203212553973 1.1060801888662897 0.19861060443300582 0.1351697308343122 571.9317314255213 286132.57604604115 0.045393457568429406 0.042797415433833544 488.23800519068885 -2.688631582541593 0.15175986761089233 YLTEHPDPNNENIVGYNNK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLTEHPDPNNENIVGYNNK 19 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 220.04 2.9914e-19 779960000.0 406740.0 384940.0 332750.0 321130.0 349490.0 436440.0 390000.0 363500.0 443170.0 410580.0 False True 404550.1570330619 397752.49519885564 379598.3076851515 361785.0250737989 393995.4799104771 406269.93006925215 371134.2100553209 390626.2158155993 333956.69167375664 384376.4328847775 1.0524842899365054 1.0347993819852317 0.9875691515117987 0.9412258247951671 1.0250250697044767 1.0569584795305011 0.9655488170019357 1.0162595372560088 0.8688271785223239 1.0 18.552160357888337 1.2748094656212487 24.99992153561721 0.9344133396809697 1.0080594712944275 0.30522502074235325 0.045532059709608254 176.12906574810052 121471.72297038365 0.02940977410612402 0.010739476434489484 18.828228731620772 -1.2748094656212487 0.07364613161345779 YLTESYGTGQDIDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLTESYGTGQDIDDR 15 0 Q9UM54-1;A0A590UJ40;E7EW20;Q9UM54;Q9UM54-2;A0A0A0MRM8;A0A1Y0BRN3;Q9UM54-5;Q9UM54-4;Q9UM54-6;A0A0D9SGC1;A0A590UJ75;A0A590UK22;A0A590UKB0;A0A590UK86;A0A5F9ZI03;A0A590UJY4;A0A590UK71 Q9UM54-1 MYO6 Unconventional myosin-VI 0 ;;; 311.71 8.2213e-56 2001760000.0 637860.0 955800.0 681210.0 724340.0 762240.0 695110.0 767500.0 626400.0 992250.0 782070.0 False True 634425.8326329082 987613.2252066985 777118.4468165357 816041.3697317475 859306.7458495586 647058.6818129359 730373.0928652782 673145.1487947499 747723.2829688052 732157.6230361859 0.8665153686469951 1.3489079320258435 1.061408667158175 1.1145706116501308 1.1736635921184537 0.8837696439321999 0.9975626420940517 0.9193992217185187 1.0212599847940804 1.0 19.48179474793614 2.743851342176705 24.995444821886007 0.958934248860679 1.1233380983151529 0.28389076507971855 0.11728607635234635 493.2019893367483 2330078.9996972093 0.03347479225730906 0.034554549218317784 554.4358985689076 -2.743851342176705 0.16440384945447384 YLTLDGFDAMFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLTLDGFDAMFR 12 0 Q7L576;Q7L576-2;Q7L576-3 Q7L576 CYFIP1 Cytoplasmic FMR1-interacting protein 1 0 ; 212.03 5.8082e-08 259520000.0 262860.0 353550.0 307190.0 320090.0 311030.0 315670.0 348230.0 298910.0 347010.0 328990.0 False True 261444.79096649183 365317.6980245115 350439.6818566541 360613.36118043266 350637.8268807565 293848.4759072509 331384.78453221574 321216.18203422497 261494.03519577192 307993.57653749 0.8488644273224571 1.186121159186071 1.1378149044416757 1.170847019715483 1.1384582458591492 0.9540733907854169 1.0759470644085931 1.0429314326791665 0.8490243145182672 1.0 18.232540737064312 2.7433095265204863 24.73649449028255 0.9992876546198534 1.1078389097873411 0.20999518681148388 0.10554969328254508 569.4511403606023 2966202.2394922464 0.03226874494053224 0.03321836236355089 553.7446285819881 -2.7433095265204863 0.10855125516748776 YLVIDEAHR ddPTM_BT-474_Trastuzumab_2h_R1 4 YLVIDEAHR 9 0 O60264;A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 O60264 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 0 ;;; 152.34 8.0702e-05 1388890000.0 1787170.0 2499390.0 2485390.0 2442720.0 2335020.0 2530120.0 2472590.0 2170800.0 3050770.0 2479260.0 False True 1777548.075293253 2582580.6852368424 2835311.3086028504 2751968.101542277 2632370.956252144 2355218.759661844 2352981.3754889383 2332796.119099045 2298948.611723598 2321031.504198724 0.7658440103366478 1.1126866139322014 1.2215738146913557 1.1856659836645873 1.1341383998839354 1.0147293371077797 1.01376537596858 1.0050687010835653 0.9904857420353071 1.0 21.14633467436021 2.6568244180142484 6.388375004667559 1.0050772579483214 1.09871282559311 0.0975569903732103 0.11630830288490551 0.5377371002675099 34.64087469549159 0.03905543315405988 0.036805464802646314 453.75812856987733 -2.6568244180142484 0.09363556764478864 YLVLDEADR ddPTM_BT-474_Trastuzumab_2h_R1 6 YLVLDEADR 9 0 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;D6RCM4;Q9NQI0-3;Q9NQI0-2;Q9NQI0-4;Q9NQI0;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX4;DDX3Y ATP-dependent RNA helicase DDX3X;Probable ATP-dependent RNA helicase DDX4;ATP-dependent RNA helicase DDX3Y 0 ;;;;; 166.82 0.00014064 3926130000.0 4354780.0 5508380.0 5206950.0 5467730.0 5053390.0 4984080.0 5160030.0 4696220.0 5889530.0 5160050.0 False True 4331334.348341539 5691723.098413974 5940043.3003792595 6159944.057381015 5696909.262710819 4639542.280862336 4910419.635671164 5046675.783321963 4438134.247158742 4830731.191258935 0.8966208585936141 1.1782322122814406 1.2296364805244373 1.2751576963187792 1.1793057897775823 0.9604223661331953 1.0164961454606338 1.0447022580047038 0.9187292919940182 1.0 22.203810144754605 2.7433143119378913 24.633332410490564 0.9976416671220276 1.1644380908535494 0.3995006838744152 0.09941592157083509 345.42117474112666 1789950.0925924978 0.0316586354306043 0.03261008402662292 553.7507302339625 -2.7433143119378913 0.16679642373152181 YLYPNIDKDHAFGK ddPTM_BT-474_Trastuzumab_2h_R1 2 YLYPNIDKDHAFGK 14 1 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224;J3KPM9;A0A669KBI6;P42224-2 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription 0 ; 198.78 1.2959e-08 1106360000.0 1244750.0 1243060.0 1139390.0 1017260.0 1164230.0 1429960.0 1436010.0 1280080.0 1896280.0 1524240.0 False True 1238048.4043047263 1284434.500654361 1299806.2082445817 1146045.011697981 1312487.789568156 1331110.230963767 1366544.7102090782 1375606.0697145306 1428967.2028501744 1426961.6982324806 0.8676115174207174 0.9001184140018178 0.9108907477016368 0.8031364914121665 0.9197778687359873 0.9328282830664335 0.9576603996461583 0.9640105066719296 1.0014054368944716 1.0 20.444515180583785 2.3633559346366293 1.0867680651364782 0.9899792499785656 0.875822974319123 0.7207173101881368 0.03040282963991047 0.2864094351879635 0.6662225951696409 0.01995220757172135 0.01264240528147365 230.8638503951928 -2.3633559346366293 -0.11415627565944253 YLYVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 YLYVDK 6 0 P35579;Q5BKV1;B1AH99 P35579 MYH9 Myosin-9 0 101.52 0.084748 297650000.0 752010.0 592760.0 483850.0 536650.0 488870.0 709270.0 523100.0 570340.0 828510.0 660650.0 False True 747961.261716166 612489.6582690132 551971.8743004074 604589.834976036 551124.6967404931 660239.83434199 497795.65456394403 612901.666927837 624334.811965215 618486.7513890784 1.2093407983862174 0.9903036029363665 0.8924554536709424 0.9775307775278437 0.8910856950495789 1.067508451650964 0.8048606594174078 0.9909697589338854 1.0094554338682311 1.0 19.23838316598447 4.721275974705735 3.6849246013380874 0.9502592990843917 1.2330023140431932 0.5342034506930067 0.07088944440307458 0.17301423579186542 4.4133272157928065 0.015785663246684144 0.13045451953772338 52635.163304706046 -4.721275974705735 0.2827430149588015 YLYYTGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YLYYTGR 7 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 ; 128.75 0.008670200000000001 1031690000.0 841600.0 943070.0 714320.0 765810.0 739730.0 974220.0 731550.0 755980.0 1151710.0 849790.0 False True 837068.9191105494 974459.5148521463 814890.0470192562 862761.4674797307 833930.2307767811 906874.4644672045 696162.1317076142 812395.0663886578 867886.5026233334 795555.6746581786 1.0521814447118456 1.2248790950687847 1.0243029783797153 1.0844765425756382 1.0482361666706617 1.1399258321636077 0.875064001028878 1.021166830011884 1.0909186248922587 1.0 19.601603371357253 2.2748134170419525 24.99999780082609 0.996563677998691 1.0956318659923852 0.3097253242417696 0.07231567985567079 207.74175566192582 143258.35227089844 0.024604362348422552 0.020584903535825295 188.28400040708 -2.2748134170419525 0.0990681879936941 YMAENPTAGVVQEEEEDNLEYDS(ph)DGNPIAPTKK ddPTM_BT-474_Trastuzumab_2h_R1 3 YMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKK 33 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3;J3KRE3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 1 YMAENPTAGVVQEEEEDNLEYDS(1)DGNPIAPTKK;YMAENPTAGVVQEEEEDNLEYDS(1)DGNPIAPTKK;YMAENPTAGVVQEEEEDNLEYDS(1)DGNPIAPTKK 348.71 5.009799999999998e-132 615816000.0 199209.0 161743.0 162239.0 146070.0 159220.0 199024.0 205214.0 194792.0 294511.0 210310.0 True False 198136.4808782007 167126.5179792916 185080.84099333253 164562.44702310543 179495.72322912308 185265.93933210225 195287.01482639098 209328.368173734 221932.71029521388 196887.83574455042 1.0063419110120664 0.8488412569892216 0.9400318729363417 0.8358182535797429 0.911664870256421 0.9409719936810781 0.9918693762257796 1.0631858864319297 1.1272037678506335 1.0 17.58701445488337 2.0745638503846404 1.7775383747993585 1.072359873477591 0.9042697991998293 0.6178580710096242 0.05310830179821084 0.20993343490023922 1.2603928434289127 0.029186212916370184 0.015639076907615818 118.730924753851 -2.0745638503846404 -0.16809007427776168 YMEDVTQIVVEPEPTAEEKPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 YMEDVTQIVVEPEPTAEEKPSPR 23 1 O15297-2;O15297 O15297-2 PPM1D Protein phosphatase 1D 1 YMEDVTQIVVEPEPT(0.041)AEEKPS(0.959)PR;YMEDVTQIVVEPEPT(0.013)AEEKPS(0.987)PR 78.429 0.0082209 186906000.0 70663.0 74989.0 62597.0 54147.0 63744.0 81198.0 81791.0 68681.0 90633.0 96499.0 True False 70282.55825939737 77484.96353319229 71410.1134971222 61002.00464818303 71861.4205597112 75584.97337953234 77834.45685803781 73806.32497505141 68297.71156997903 90340.35120304958 0.7779752604838763 0.8577004904379503 0.790456452140864 0.6752464854943337 0.7954520831803609 0.836669023011069 0.8615691196849187 0.816980717831878 0.7560044947852 1.0 16.46308290189155 2.7904083949491967 4.4492150614753525 0.8418278798326795 0.7775636991200511 0.20979906746744925 0.0711283423342828 0.41802326479924257 17.916597879024557 0.022115623656354513 0.023098981825496363 617.1750983873156 -2.7904083949491967 -0.0642641807126284 YMEENDQLKK ddPTM_BT-474_Trastuzumab_2h_R1 1 YMEENDQLKK 10 1 P51572;P51572-2;C9JSP1;C9JQ75;C9J0M4;A0A2R8Y5M6;C9JMD7 P51572 BCAP31 B-cell receptor-associated protein 31 0 97.911 0.008943000000000001 0.0 149500.0 176090.0 197880.0 132840.0 174920.0 267100.0 183830.0 163850.0 247840.0 204170.0 False True 148695.10861101144 181951.04920134708 225739.78399620682 149657.53037960804 197195.0251679322 248636.00568576943 174937.4406012041 176077.31901344136 186763.15288585416 191139.69580126897 0.7779394436496967 0.9519270627621199 1.1810198977762951 0.7829746183922432 1.0316801245355076 1.300807792141096 0.9152334362982841 0.921197024382166 0.9771029094868646 1.0 17.54426790208986 4.68380399299777 4.05768121954904 1.0069234364856074 0.7687149475816722 0.21096678186984086 0.13597720105757366 0.32868397505425817 10.134536963355167 0.033101617092826836 0.19899045437205884 48284.08357782396 -4.68380399299777 -0.2382084889039352 YMHSGPVVAMVWEGLNVVK ddPTM_BT-474_Trastuzumab_2h_R1 3 YMHSGPVVAMVWEGLNVVK 19 0 Q32Q12;P22392-2;J3KPD9;E7ERL0;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 ;; 156.22 1.8122e-08 749200000.0 525149.0 538887.0 550271.0 490018.0 456892.0 651798.0 555852.0 517943.0 774790.0 598732.0 False True 522321.65613353834 556823.5280309297 627744.3737587264 552054.2285573228 515074.48798894876 606740.7384274544 528963.3151991534 556594.5367212632 583853.3861540946 560520.4111597458 0.9318512684539494 0.9934045521711387 1.1199313374866953 0.9848958531502786 0.918921912091003 1.0824596684571688 0.9437003624983091 0.992996018770557 1.0416273422515903 1.0 19.096407383672304 YMIVDEGHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YMIVDEGHR 9 0 A0A2R8Y4P4;A0A2R8Y7S2;P51532-4;P51532-2;A0A0A0MT49;P51532;Q9HBD4;P51532-3;P51532-5;A0A2R8YF58;A0A2R8Y7Y7;A0A2R8Y526;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y440;A0A2R8YGG3;A0A2R8Y4C5;A0A2R8Y6V2;A0A2R8Y7F3;A0A2R8YG32;A0A2R8YDA1;A0A2R8YGP5;A0A2R8YFV8;A0A2R8YCY3;A0A2R8Y4R6;F6VDE0;P51531-2;P51531;A0A0U1RQZ9 A0A2R8Y4P4;F6VDE0 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 0 ; 103.55 0.0034048000000000004 243090000.0 483450.0 501810.0 466240.0 498040.0 454570.0 506330.0 508420.0 469750.0 633580.0 496070.0 False True 480847.1589163446 518512.44249944924 531882.5393692714 561091.8129348085 512456.7950525214 471328.5988726146 483825.7822469896 504805.13034216757 477442.69853703794 464410.3878931055 1.0353927721078935 1.11649621975897 1.1452856207249527 1.2081810130912845 1.1034567882458195 1.014896761915458 1.0418065462358972 1.0869807039250807 1.0280620567146574 1.0 18.82504071708443 2.923785283740544 5.915174500877424 1.044902634617352 1.1303390090529637 0.4790751539786835 0.04528679214014013 0.220686180019511 13.311661832318078 0.014528630075244204 0.01555669120928633 839.04505801775 -2.923785283740544 0.0854363744356117 YMLTHQELAS(ph)DGEIETK ddPTM_BT-474_Trastuzumab_2h_R1 4 YMLTHQELASDGEIETK 17 0 Q02241;H7BYN4;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK 263.87 1.2753e-27 1273220000.0 1658010.0 1422760.0 1444370.0 1163640.0 1250940.0 2165060.0 1695260.0 1612710.0 2502640.0 1887640.0 True False 1649083.4583822284 1470115.7065234187 1647724.7413109022 1310956.7046893027 1410239.7940977192 2015394.4982030387 1613253.797277906 1733058.609375448 1885897.9056579003 1767169.1991100884 0.9331780223493451 0.8319043288349186 0.9324091559204766 0.7418399468197356 0.7980219408576656 1.1404649307027033 0.9129028494217242 0.9806976096279757 1.0671858170726387 1.0 20.7530087478842 2.759218383268972 24.998568566676816 1.0069362289594352 0.8454563060972309 0.553534783733054 0.07711337174672515 660.7097486224797 799543.2109029375 0.023443205376737875 0.024842236736612604 574.4052270041894 -2.759218383268972 -0.16147992286220436 YMNSDTTS(ph)PELR ddPTM_BT-474_Trastuzumab_2h_R1 6 YMNSDTTSPELR 12 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 YMNSDTTS(1)PELR;YMNSDTTS(1)PELR;YMNSDTTS(1)PELR;YMNSDTTS(1)PELR;YMNSDTT(0.027)S(0.973)PELR;YMNSDTT(0.004)S(0.996)PELR 281.1 4.8557e-28 5663140000.0 5958930.0 7248050.0 6608480.0 6957810.0 6579430.0 7005720.0 7208140.0 6117880.0 7623590.0 6972500.0 True False 5926847.782979363 7489296.96271126 7538896.542062118 7838668.032599671 7417281.41116309 6521431.066091005 6859454.73043118 6574427.271565173 5744858.395372288 6527509.080542427 0.9079800134857645 1.147343783103387 1.154942329308203 1.2008666607551144 1.1363111593782302 0.9990688615861846 1.0508533417254426 1.0071877634245814 0.880099640534686 1.0 22.638101128824285 2.7317539067018117 22.182160973579116 0.994770977700055 1.1191935946931288 0.3422680894447099 0.08374952137402687 134.59567587765144 438626.2352630068 0.027182543751150673 0.026235440178247155 539.2049950111151 -2.7317539067018117 0.12442261699307389 YMTISDEWDIPEKQPFK ddPTM_BT-474_Trastuzumab_2h_R1 1 YMTISDEWDIPEKQPFK 17 1 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 160.47 2.8141e-09 218780000.0 360470.0 308140.0 295380.0 226040.0 242170.0 403860.0 372850.0 328500.0 490590.0 361510.0 False True 358529.26957198186 318396.2536254368 336966.936511015 254656.64082359662 273008.9140459536 375942.10878418107 354813.8210746831 353014.33808920055 369690.6680692026 338438.12229571724 1.059364314929952 0.9407812910249855 0.9956530139845866 0.7524466779811677 0.8066730550153758 1.1108148994388225 1.048386093942033 1.0430690718132134 1.0923434557593303 1.0 18.36853255988426 2.726524987202619 24.995287213568634 1.0591162456481098 0.9085353331087345 0.42573704204885354 0.0858850721268143 787.3299810835997 1635104.2078694922 0.029401913222168456 0.027912781917010115 532.7518754057298 -2.726524987202619 -0.15058091253937533 YMTISGFQIEETIDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YMTISGFQIEETIDR 15 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 ; 172.09 2.4339e-06 87517000.0 67636.0 65396.0 52258.0 53498.0 49879.0 59700.0 52631.0 48245.0 65783.0 57317.0 False True 67271.85529106604 67572.66632728322 59615.472165321284 60270.84131472652 56230.794994004646 55573.0795186837 50085.037460055326 51845.28688314608 49571.66109703892 53658.97998844745 1.2536923979089685 1.2592983754411904 1.1110064369124468 1.1232200337707234 1.047928883592474 1.0356715601125543 0.9333952578084492 0.9661996350714858 0.9238278682843298 1.0 15.711532010003362 3.744594265638379 0.5956252440151099 0.9454710868439173 1.3215765033821043 0.9073758262006741 0.034866582016539235 0.35790410033652625 0.20617681983304445 0.020218182837109022 0.08114825629993934 5553.851529697119 -3.744594265638379 0.37610541653818697 YMVENHGEDYK ddPTM_BT-474_Trastuzumab_2h_R1 5 YMVENHGEDYK 11 0 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1;Q9Y3C1-3;Q9Y3C1-2 D6RIC3 NOP16 Nucleolar protein 16 0 ;;;; 123.2 0.00037482 788870000.0 2116170.0 2033220.0 1912590.0 1963630.0 1905920.0 2327720.0 2198470.0 2440890.0 3090270.0 2587540.0 False True 2104776.7758485894 2100894.498592554 2181866.047469704 2212225.3566644797 2148627.614727107 2166810.195263492 2092121.6071290288 2623041.6063882783 2328714.3659964832 2422400.9818955543 0.8688804172303378 0.8672777604922295 0.9007039147426248 0.9132366495877945 0.8869826386240081 0.8944886546272534 0.8636561918381991 1.0828271727068575 0.961324893525365 1.0 21.20800626454231 1.7497365403384635 24.999999999999975 1.0188579732632765 0.8864755947517211 0.780056137357898 0.031527258783198925 1.199742750730309 2688.646611253888 0.01357954910235984 0.007530598544861525 56.20002908635548 -1.7497365403384635 -0.13238237851155543 YMWDSQSGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YMWDSQSGR 9 0 Q9UKD2 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog 0 ; 175.51 0.00012529 262590000.0 357990.0 506970.0 465220.0 444090.0 425850.0 491060.0 445590.0 412390.0 531000.0 457090.0 False True 356062.6216164277 523844.18998016365 530718.932235271 500311.74846642686 480079.47328929836 457114.1780309017 424035.10938089783 443164.6358739888 400142.16503545997 427918.1248655627 0.8320811877933202 1.2241692032669511 1.2402347584646123 1.1691763433100848 1.1218956276743897 1.068228129328505 0.9909257980463324 1.0356295050909938 0.935090480594088 1.0 18.706975261367088 2.480315438348464 2.195325039335256 0.9957562257228351 1.1339626057602885 0.22636023769562497 0.10834709668315386 0.45042548382277114 4.393021939397381 0.04300554231223617 0.03567687634196088 302.2145979499638 -2.480315438348464 0.13820638003745345 YNADEAR ddPTM_BT-474_Trastuzumab_2h_R1 5 YNADEAR 7 0 P47813;O14602;X6RAC9;A6NJH9 P47813 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal 0 ;;;; 138.26 0.0065205 2761130000.0 3581510.0 4191000.0 4080620.0 4023930.0 3702890.0 3840650.0 4143780.0 3356190.0 4763340.0 3903840.0 False True 3562227.5481031667 4330494.901487001 4655135.826615127 4533359.125417164 4174431.0927514597 3575154.905417628 3943329.5306231654 3606645.940187501 3589478.682485895 3654693.588954428 0.9746993725737443 1.184913261832687 1.2737417551732197 1.24042112288656 1.1422109654740504 0.9782365657747096 1.0789767827708132 0.9868531663195673 0.982155848395709 1.0 21.80131902441391 2.8421126872082825 4.605946624492164 1.009365514393899 1.1783969100056226 0.5005700682088696 0.07871564907271061 0.19338442253878244 6.719960829524972 0.02524049840051809 0.026845291208519556 695.2046802577803 -2.8421126872082825 0.16903139561172353 YNEDLELEDAIHTAILTLK ddPTM_BT-474_Trastuzumab_2h_R1 2 YNEDLELEDAIHTAILTLK 19 0 A0A024RA52;P25787;C9JCK5 A0A024RA52 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 0 ; 149.94 8.052e-08 120502000.0 80969.0 81779.0 73945.0 84670.0 75778.0 93964.0 95891.0 77114.0 115021.0 100660.0 False True 80533.07190050153 84500.9645785506 84355.8132585381 95389.21331858926 85427.87912860495 87468.48984746385 91252.385990807 82868.63825695762 86675.61575243619 94235.79262063815 0.8545911236158515 0.8966971277964763 0.8951568285537369 1.0122397304238147 0.9065332476430593 0.9281875539539716 0.9683410459352599 0.8793754045297746 0.9197738284153165 1.0 16.523987507630785 -3.0799829443578535 0.009749004254590646 1.9726600469530262 1.9790564521969523e-07 0.27172045869047945 0.04199137382059317 15941.082928498545 16.666345506283122 1869.6102270728989 1518.4308832686525 0.0008317964368269368 3.0799829443578535 -1.972659849047381 YNEEER ddPTM_BT-474_Trastuzumab_2h_R1 2 YNEEER 6 0 K7EP07;Q99426-2;Q99426;A0A494C0X0;K7EK42 K7EP07 TBCB Tubulin-folding cofactor B 0 ; 148.33 0.025077 228071000.0 480610.0 529940.0 458270.0 479020.0 510670.0 459880.0 517370.0 451910.0 542520.0 518380.0 False True 478022.449160791 547578.7325445054 522790.43264575413 539663.8828849726 575700.7975217695 428089.57804107654 492342.83655467007 485633.8189524829 408823.2153955517 485296.54459255317 0.985011029827403 1.1283384121439466 1.077259746583772 1.1120291065292158 1.186286619875108 0.8821195675326585 1.0145195593099325 1.0006949861145475 0.8424193824392316 1.0 18.888507062301265 2.7357641603159304 24.99992557418135 0.9579320724931034 1.0991334445535752 0.53671818771338 0.06928819543501319 208.30797275081608 1862236.7898958176 0.021636923690024807 0.02122683009360715 544.2070458801185 -2.7357641603159304 0.14120137206047179 YNEQHVPGSPFTAR ddPTM_BT-474_Trastuzumab_2h_R1 3 YNEQHVPGSPFTAR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 ;; 112.17 0.00060895 2289900000.0 2215130.0 2495160.0 2210800.0 2154770.0 1982090.0 2412390.0 2142600.0 1962980.0 2844020.0 2455450.0 False True 2203203.9862040766 2578209.892243927 2522061.42338192 2427563.661066455 2234497.4127321476 2245627.157455231 2038954.2524731548 2109467.5354104675 2143149.3789155385 2298741.0787834935 0.9584393851655639 1.1215747245480687 1.0971489771769376 1.0560404925426117 0.972052674116154 0.9768943436829473 0.8869873476799661 0.9176620868178896 0.9323143866423204 1.0 21.132412544996825 3.049491206555507 1.8495516954964102 0.9293437960725848 1.0679628615706487 0.5412496743072799 0.049716466022277105 0.22516076345829938 1.5690775529533605 0.01647970961659033 0.020133088254631986 1120.704734264994 -3.049491206555507 0.1386190654980639 YNEWADDRR ddPTM_BT-474_Trastuzumab_2h_R1 1 YNEWADDRR 9 1 Q92620 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 97.472 0.010692 299590000.0 168300.0 224900.0 216980.0 242130.0 214800.0 206070.0 243310.0 159730.0 236270.0 214650.0 False True 167393.89149988795 232385.6605450788 247528.897976031 272783.6331738515 242153.506780653 191824.865936602 231540.16576553864 171649.8636925052 178044.42435579706 200950.85322888932 0.8330091104874338 1.15643032518197 1.2317882407500298 1.3574644187409464 1.2050384603484743 0.9545859739053084 1.1522228547186468 0.8541882800417405 0.8860097954050431 1.0 17.61648317746907 2.0873628922913614 1.4414671387207818 0.9067949901596685 1.1598737576228433 0.2792377028953337 0.14596726956935296 0.5004989848657346 1.9641649915425234 0.09759857810381041 0.049965835315254496 122.2821010863727 -2.0873628922913614 0.2530787674631748 YNFPNPNPFVEDDMDKNEIASVAYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YNFPNPNPFVEDDMDKNEIASVAYR 25 1 O15371-2;O15371;O15371-3 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 ; 129.27 9.3807e-05 719495000.0 226610.0 244980.0 201804.0 183080.0 209227.0 202492.0 185945.0 150324.0 218629.0 174155.0 False True 225389.95693873768 253134.01120646248 230216.24908818761 206257.9092283846 235870.81826441226 188494.20465489622 176950.12997111937 161541.940209805 164750.81242850766 163040.27879840316 1.3824188636074952 1.5525857356969983 1.4120207030119627 1.2650733349359602 1.4467027412046012 1.156120475529648 1.0853154280355195 0.9908100096513524 1.0104914788094759 1.0 17.314868898059615 2.5268682690136335 1.1320491209195824 0.9860286432523021 1.4361260946725087 0.8702691527007876 0.07143068816766039 0.15682371845233187 0.4083019019414307 0.04031761147026337 0.03020684145996758 336.4095135573585 -2.5268682690136335 0.45009745142020663 YNGGVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YNGGVGR 7 0 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;P18621-3;J3QLC8;A0A0A0MRF8;P18621-2;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 ; 128.38 0.0087545 495500000.0 474220.0 582810.0 524220.0 560790.0 542250.0 451860.0 569100.0 513760.0 601070.0 552140.0 False True 471666.8522107955 602208.4785339147 598025.6193980769 631785.956500906 611302.3233324448 420623.9817640273 541570.4588268789 552099.380020419 452944.35242535616 516901.9524891634 0.9124880452462284 1.1650342499848454 1.1569420787022744 1.2222549237017075 1.182627228217445 0.8137403616652918 1.0477237631216583 1.068093044264509 0.8762674434565072 1.0 18.97953112621031 2.7749001470417887 24.999184824653124 0.9810716917116055 1.1367928393094435 0.37405747128022426 0.10596131564412553 683.9092013443274 470483.0171563405 0.032751074994408935 0.03473678858332247 595.5252046719283 -2.7749001470417887 0.15572114759783806 YNGLIHR ddPTM_BT-474_Trastuzumab_2h_R1 4 YNGLIHR 7 0 P46779;H0YKD8;P46779-2;P46779-3;H0YLP6;H0YMF4;P46779-4;P46779-5 P46779 RPL28 60S ribosomal protein L28 0 ;;; 121.29 0.0044522 1394850000.0 1245300.0 1466480.0 1506250.0 1418370.0 1280170.0 1378920.0 1414170.0 1283130.0 1824420.0 1431220.0 False True 1238595.4431658355 1515290.9002941207 1718316.907440302 1597935.4965712463 1443192.0613379364 1283598.5060285316 1345761.1944459807 1378883.676202118 1374816.1369755075 1339878.3142709094 0.9244089033859865 1.1309168035297754 1.2824425092478033 1.1925974766154477 1.0771068133327055 0.9579963287390002 1.0043906077980465 1.0291111226413372 1.0260753699291039 1.0 20.353670552567294 2.9952336809572606 5.806738171622439 1.0078904071477421 1.142783624802372 0.33404793069467065 0.08555355363242308 0.1881680300988014 24.044337457867943 0.02688701860415605 0.03056652910699218 989.0851488344167 -2.9952336809572606 0.1348932176546298 YNHIDESEMK ddPTM_BT-474_Trastuzumab_2h_R1 3 YNHIDESEMK 10 0 Q92598-2;Q92598;Q92598-4;A0A0A0MSM0;Q92598-3;Q5TBM3 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 ;; 176.95 2.3794e-06 2347900000.0 3949220.0 3479230.0 3202560.0 3036210.0 2754590.0 3826870.0 3963780.0 2825290.0 5901020.0 3805490.0 False True 3927957.838319586 3595034.0673110476 3653452.6108494657 3420593.874690372 3105370.7087659226 3562327.4843830033 3772036.8182899463 3036127.4863319257 4446792.690616861 3562620.3701561 1.1025474033730622 1.0090982742440018 1.0254959078587949 0.9601342605416291 0.8716535544397219 0.999917789227404 1.058781578269781 0.8522175171302057 1.248180335987362 1.0 21.764507328609916 -0.31423789157143256 6.839700526999569 1.0000021022070142 0.9991415502710045 0.0 0.10790076019242911 0.0 0.0 0.0984734004856392 0.023210403083298053 0.48502274861380895 0.31423789157143256 -0.0008605519360097569 YNILGTNTIMDK ddPTM_BT-474_Trastuzumab_2h_R1 2 YNILGTNTIMDK 12 0 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;Q00839-2;A0A1W2PPS1;A0A1W2PP35;A0A1W2PQL0;A0A1W2PP34 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ; 136.53 0.00025196 489370000.0 1235490.0 1264670.0 800510.0 1087440.0 1725070.0 1420500.0 1187930.0 1304480.0 946640.0 1434000.0 False True 1228838.2591158426 1306763.7764408402 913214.8498423469 1225109.7925022661 1944747.4392090384 1322304.178497325 1130465.2875667112 1401826.9216152222 713353.2563261177 1342480.8922908322 0.9153487890758223 0.9733946933210769 0.6802442068907376 0.9125714932238015 1.4486220626131134 0.9849705765576466 0.842071789668206 1.0442062376196066 0.5313693926092605 1.0 20.356470123610514 -2.655292241581341 2.1579645673651155 2.535536525896904 0.9408840415096488 0.005595180695430413 0.22766792509056 9728686.863182131 1883474.014536954 71537178.11656854 0.05478910365686732 0.0022116059945334614 2.655292241581341 -1.5946524843872552 YNLDAS(ph)EEEDSNK ddPTM_BT-474_Trastuzumab_2h_R1 6 YNLDASEEEDSNK 13 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK 362.97 4.3370999999999994e-77 8492530000.0 10476960.0 7179230.0 6317130.0 5524210.0 5859700.0 8567570.0 7681690.0 7806850.0 10237130.0 7616080.0 True False 10420553.211459693 7418186.330613826 7206526.994521718 6223574.419589994 6605898.061837034 7975314.051790437 7310097.307794507 8389436.789381048 7714326.482014048 7130015.253945859 1.4615050375513292 1.0404166143275064 1.0107309364497523 0.8728697201798794 0.9264914346685625 1.118554977477331 1.0252568960142108 1.1766365835947132 1.0819509085544834 1.0 22.765473732496634 4.738440027738706 7.066767966911002 1.0339530000007167 1.467564220672183 0.7095765276383985 0.08311658538930732 0.06599965332494558 26.111334699825765 0.022587659880012066 0.1370123095812093 54757.048105689566 -4.738440027738706 0.4336112206714664 YNLDAS(ph)EEEDSNKK ddPTM_BT-474_Trastuzumab_2h_R1 6 YNLDASEEEDSNKK 14 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 YNLDAS(1)EEEDSNKK;YNLDAS(1)EEEDSNKK;YNLDAS(0.858)EEEDS(0.142)NKK;YNLDAS(1)EEEDSNKK;YNLDAS(0.976)EEEDS(0.024)NKK;YNLDAS(1)EEEDSNKK 254.72 3.083e-24 4791610000.0 4602440.0 2857010.0 2454590.0 2184650.0 2422550.0 3417150.0 3529380.0 3563700.0 5731080.0 3411390.0 True False 4577660.97441915 2952103.850750985 2800174.9363212497 2461226.466002791 2731047.3829211877 3180930.4636058677 3358650.405859096 3829641.390101933 4318732.126537522 3193672.169562082 1.4333534349728956 0.9243603269260349 0.8767884703410905 0.7706572044118968 0.8551433077414675 0.9960103275227647 1.0516578495029552 1.199134158665714 1.3522778473313712 1.0 21.606784797032354 1.9465857937553968 2.39928695610984 1.2061896946426274 0.9540605609010494 0.19208515438282714 0.18586987420982273 0.4236818365212397 4.474408413330649 0.10411288999305235 0.054421850506740456 88.42718375693633 -1.9465857937553968 -0.25212913374157797 YNLDAS(ph)EEEDSNKKK ddPTM_BT-474_Trastuzumab_2h_R1 5 YNLDASEEEDSNKKK 15 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK 206.21 2.0922e-09 7528570000.0 4717010.0 2821180.0 2300830.0 2284597.0 2272643.0 3914300.0 3859760.0 3567970.0 7232370.0 3531650.0 True False 4691614.142269081 2915081.2708606757 2624766.864827129 2573826.745954991 2562050.615039591 3643713.6542710797 3673048.663084935 3834230.039184551 5450049.322292864 3306257.073402316 1.4190106933944973 0.881686210764277 0.7938786387611727 0.7784714524047536 0.7749096812980437 1.1020660442841799 1.1109386177600433 1.1596890241928233 1.6484045860004684 1.0 21.656767473054135 2.03133449748461 1.5255637842992662 1.2995089189051963 0.9203180206386761 0.26892988034698606 0.23504443175619183 0.4956407684117681 2.160481247851358 0.15231473472252963 0.07523624980622402 107.48169272072072 -2.03133449748461 -0.3791908982665202 YNLDASEEEDS(ph)NKK ddPTM_BT-474_Trastuzumab_2h_R1 1 YNLDASEEEDSNKK 14 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 YNLDAS(0.246)EEEDS(0.754)NKK 223.14 3.8482e-12 156050000.0 246680.0 158880.0 129850.0 113990.0 117180.0 191890.0 194010.0 186640.0 292210.0 160430.0 True False 245351.90228872476 164168.22475501194 148131.75132356703 128421.12231234196 132102.1784197251 178625.09596047268 184624.9951098275 200568.0245387166 220198.76091339317 150191.2200489669 1.6335968388081046 1.093061396674773 0.9862876889559296 0.8550507963812584 0.879559926183806 1.1893178303114886 1.2292662317386738 1.3354177725790184 1.4661227256932974 1.0 17.196440951989075 2.351443314205594 3.06466627774022 1.2927295466944893 1.0692964020076374 0.09287705138575142 0.2305339410979979 0.487440268864853 9.216377883450743 0.09036639170618788 0.07191193915228372 224.6173577600366 -2.351443314205594 -0.22343314468685183 YNLEELYQAVENLCSHK ddPTM_BT-474_Trastuzumab_2h_R1 1 YNLEELYQAVENLCSHK 17 0 Q13619;A0A087WWN2 Q13619 CUL4A Cullin-4A 0 114.4 0.00036531 478060000.0 92425.0 97281.0 96934.0 76597.0 78548.0 115480.0 121480.0 86684.0 150380.0 126530.0 False True 91927.39406938294 100518.93927739357 110581.46463456805 86294.17234633255 88550.62220952871 107497.13941067999 115603.5483013341 93152.80025243302 113320.86398876178 118454.7470722169 0.7760549605778032 0.8485851497037209 0.9335334156524024 0.7284990638131421 0.7475481092838188 0.9074954112657341 0.9759300590195467 0.7863998915606283 0.95665954121429 1.0 16.853976490155656 2.70826766152682 23.107217454675705 0.9060750197446172 0.8118488778836555 0.35902060475563047 0.07687928507834789 391.19864316868257 298401.954988694 0.02573780674451932 0.024270482402825352 510.81972804451493 -2.70826766152682 -0.09422614186096179 YNMGLPVDFDQYNELHLPAVILK ddPTM_BT-474_Trastuzumab_2h_R1 2 YNMGLPVDFDQYNELHLPAVILK 23 0 Q07960;H0YE29 Q07960 ARHGAP1 Rho GTPase-activating protein 1 0 ; 228.62 6.6184e-33 1106290000.0 1161420.0 1233200.0 1135390.0 1089130.0 1207780.0 1450750.0 1391850.0 1230190.0 1575120.0 1384820.0 False True 1155167.043765893 1274246.3165148576 1295243.0430132078 1227013.7463289858 1361583.6239270826 1350463.0671981655 1324520.8981166605 1321993.0245782456 1186952.7815266543 1296439.60199595 0.8910303588284721 0.9828813579537955 0.9990770422463954 0.9464488314302657 1.0502484048087077 1.041670637890915 1.0216603195995229 1.0197104612840848 0.9155480746648482 1.0 20.30612356538764 5.880219950174908 1.0149866462814496 1.0062081299561694 9.529581302434936e-11 0.39883345602901255 0.03919313583868755 15.641280190538497 2.121645030046169 0.011660736948179144 29.06424554715768 758961.856974123 -5.880219950174908 -1.0062081298608736 YNPPDHEVVAMAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YNPPDHEVVAMAR 13 0 O60885;O60885-2;O60885-3;M0QZD9;Q15059;Q15059-2 O60885;Q15059 BRD4;BRD3 Bromodomain-containing protein 4;Bromodomain-containing protein 3 0 ; 148.41 4.3252e-05 912510000.0 698570.0 814340.0 825270.0 863060.0 823600.0 914280.0 875910.0 755030.0 808700.0 865280.0 False True 694808.9767384229 841444.8146210755 941460.8426245686 972323.3075084653 928480.5781403437 851077.9755836197 833538.8869988609 811374.1725646537 609406.7210248143 810057.0895965218 0.8577284066293371 1.0387475468428866 1.1622154224876882 1.2003145457226552 1.146191533985348 1.0506394999981172 1.0289878302454398 1.0016259137597177 0.7523009536628478 1.0 19.62766406141607 1.5254868743939334 3.0929654421382398 0.875129736143122 1.079037750769144 0.3296696872306252 0.10631488073861263 0.24219681221878137 4.98165237472422 0.0769903881347966 0.028778413517116724 33.534116933997446 -1.5254868743939334 0.20390801462602204 YNPTWHCIVGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YNPTWHCIVGR 11 0 P63167;Q96FJ2 P63167;Q96FJ2 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic 0 ; 174.84 1.0533e-05 1405150000.0 520020.0 751540.0 759690.0 938400.0 780200.0 722420.0 811430.0 594200.0 1045780.0 802610.0 False True 517220.2700996535 776554.5545844769 866647.7486561463 1057201.34378368 879553.845392298 672480.8057937596 772178.030936381 638542.221286463 788061.5317340556 751386.7426510073 0.6883542665057163 1.0334951503731271 1.1533977104766058 1.4070002620138227 1.1705740805182396 0.8949862535784763 1.0276705551285332 0.8498183226304851 1.048809470544628 1.0 19.51919613595765 2.7373555237919396 24.990092120582727 0.9516614125632502 1.1084643081508276 0.10843073767050293 0.17557022110743944 220.51045764418163 4572716.908531396 0.05874996403808008 0.05831524388649035 546.2048143747396 -2.7373555237919396 0.15680289558757743 YNQLLR ddPTM_BT-474_Trastuzumab_2h_R1 3 YNQLLR 6 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 ;; 131.42 0.035677 2037440000.0 2799220.0 2641060.0 2020320.0 2044600.0 1852260.0 2607120.0 2000320.0 1925900.0 3180950.0 2750430.0 False True 2784149.3105425765 2728966.0855455147 2304763.49506376 2303446.150362439 2088134.3317948447 2426895.9309003465 1903556.8796355338 2069620.4375220458 2397047.495046229 2574895.202638409 1.0812670386312233 1.0598357877824442 0.8950902128762932 0.8945786018794764 0.810958958506429 0.9425222154336951 0.7392754771864201 0.8037688040279756 0.9309301180840505 1.0 21.29608228561594 4.208075763078948 2.3534765193507856 0.8554582970138396 1.0881285769247857 0.5157421412396481 0.07356051143091466 0.2106675624472687 2.278793130839987 0.01889997739000049 0.06404885560086494 16146.402077544812 -4.208075763078948 0.23267027991094613 YNTEGRVS(ph)PSPSQESLSSSK ddPTM_BT-474_Trastuzumab_2h_R1 5 YNTEGRVSPSPSQESLSSSK 20 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 YNTEGRVS(0.999)PS(0.001)PSQESLSSSK;YNTEGRVS(0.941)PS(0.059)PSQESLSSSK;YNTEGRVS(0.711)PS(0.289)PSQESLSSSK;YNTEGRVS(0.769)PS(0.231)PSQESLSSSK;YNTEGRVS(0.945)PS(0.055)PSQESLSSSK 316.04 1.1639999999999998e-66 5346270000.0 2454040.0 2201750.0 2217690.0 2118240.0 2162290.0 2635710.0 2713850.0 2421300.0 3385000.0 2725960.0 True False 2440827.721309476 2275033.9177640206 2529921.475492965 2386408.966811957 2437644.8146030633 2453509.5714939693 2582570.707586234 2601989.7011122736 2550812.106676143 2551986.8989882255 0.9564421048858753 0.891475547412094 0.9913536297917482 0.9351180320549786 0.9551948779868364 0.9614115074284671 1.0119843125409984 1.019593675086605 0.9995396558216861 1.0 21.28318949215218 2.3436305026812136 3.0272430334829488 1.0111865447044504 0.9454042213331149 0.5995340911044573 0.02389820648851423 0.1632759006881505 3.019971551460009 0.008902767882109159 0.007040376849574733 220.61269636754287 -2.3436305026812136 -0.0657823233713355 YNTEGRVSPS(ph)PSQESLSSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 YNTEGRVSPSPSQESLSSSK 20 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 YNTEGRVS(0.193)PS(0.802)PS(0.005)QESLSSSK 293.13 9.7039e-55 1763400000.0 652340.0 660680.0 667360.0 588030.0 583860.0 750540.0 755680.0 696650.0 938960.0 793490.0 True False 648827.8739217874 682670.3344105057 761318.4872028938 662474.5377079259 658211.1101906528 698656.9363811207 719124.8714220631 748637.5605170205 707565.8894193895 742848.788859032 0.8734319603836809 0.918989631064814 1.0248633350701561 0.8918026759193405 0.8860633820264051 0.9405102988108964 0.968063598147064 1.0077926648663986 0.9525032550785542 1.0 19.50270904621724 2.2215551062896624 3.02046185943252 0.9873451136126581 0.9228890264871921 0.34162989844751257 0.04140271995801663 0.3098405801507848 5.842262915398376 0.01760607564313733 0.012746418363913265 166.55401496393176 -2.2215551062896624 -0.06445608712546602 YNVPLNR ddPTM_BT-474_Trastuzumab_2h_R1 1 YNVPLNR 7 0 Q9UHB6;Q9UHB6-4;Q9UHB6-2;Q9UHB6-5;F8VQE1;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 100.82 0.046434 0.0 80707.0 93271.0 84209.0 88317.0 87196.0 100600.0 92835.0 71085.0 113810.0 94072.0 False True 80272.48247939057 96375.46885148996 96064.89524225077 99497.92314465396 98299.89374881683 93645.75878692756 88344.21638586075 76389.72366231606 85763.0504758676 88068.24442090873 0.9114804434586036 1.0943271264824823 1.0908006157488876 1.129782066156773 1.1161786452674984 1.06333173100808 1.003133614922912 0.8673923746818778 0.9738249131659329 1.0 16.42633428660431 2.0585094152297483 3.7048258622790446 0.9324506797285986 1.0745878978107146 0.3970963080368952 0.06558610120793416 0.19218286507128848 5.361930598478401 0.02782713823622103 0.018591872523292734 114.42196855073514 -2.0585094152297483 0.142137218082116 YNVYPTYDFACPIVDSIEGVTHALR ddPTM_BT-474_Trastuzumab_2h_R1 2 YNVYPTYDFACPIVDSIEGVTHALR 25 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 ; 243.87 9.8694e-39 937930000.0 460470.0 595190.0 493210.0 556640.0 547580.0 586380.0 565470.0 465130.0 703840.0 590110.0 False True 457990.880683027 615000.5393500469 562649.6809418286 627110.5669264157 617311.0672390608 545844.9307900462 538116.0557948258 499840.36248228257 530388.0629728027 552448.6745814111 0.829019783656908 1.1132265632025116 1.018465075272643 1.1351472015053268 1.1174089026583254 0.9880464121008735 0.9740561984379 0.9047724892470967 0.9600675816168377 1.0 19.07548091112832 2.4396908002743647 3.4302087581100533 0.9479210933904578 1.050692220083901 0.16687840870416826 0.08452831526651562 0.34565878164665825 8.52489584927364 0.03010651346624059 0.025403851189626483 275.22685041820586 -2.4396908002743647 0.10277112669344324 YNYHLDSSGSYVFENTVATVMALR ddPTM_BT-474_Trastuzumab_2h_R1 6 YNYHLDSSGSYVFENTVATVMALR 24 0 P49588;P49588-2 P49588 AARS Alanine--tRNA ligase, cytoplasmic 0 ;;;;; 373.67 7.264399999999995e-119 2378888000.0 1135628.0 1347374.0 1352708.0 1393087.0 1458857.0 1412571.0 1230835.0 1201883.0 1548442.0 1446148.0 False True 1129513.9050281334 1392220.5290852177 1543157.5284512895 1569451.6713635735 1644633.791627109 1314923.2916044649 1171294.8088036925 1291573.612498212 1166849.2171597707 1353853.5965304072 0.8342954569997811 1.0283390557539867 1.1398259992114521 1.1592477025475214 1.214779645186082 0.9712448192140486 0.8651561821791013 0.9539979919602802 0.8618725245847242 1.0 20.36864030603665 2.490980667562226 23.325432754838275 0.9185658541337727 1.0821450623818165 0.3404918510406497 0.1025387909851676 304.7679474799552 512927.19015709794 0.03542835605215413 0.032114529558679286 309.72814219568045 -2.490980667562226 0.16357920824804384 YPDHS(ph)VDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 YPDHSVDRR 9 1 Q15424;Q15424-3;Q15424-4;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 YPDHS(1)VDRR;YPDHS(1)VDRR 103.08 0.0021315 948160000.0 483990.0 395900.0 343170.0 378040.0 349570.0 318050.0 365120.0 376370.0 361400.0 426560.0 True False 481384.25161634467 409077.29217339656 391485.3531128883 425899.8252386855 394085.6674362804 296063.95210916875 347457.75070614996 404456.640568135 272337.812511893 399336.5756036105 1.2054599579032208 1.0243922474545755 0.9803393353617689 1.0665184489923663 0.9868509210322316 0.7413895200099271 0.870087469901689 1.0128214275308627 0.6819756294555422 1.0 18.607245690222857 6.073750324340374 0.43860527390472537 0.8773488704713879 2.067496563327288 0.44441449043012404 0.10912806337246203 15.2605416473159 0.9175162848474536 0.07109413979266506 12.110693299210721 1185087.2462800131 -6.073750324340374 1.1901476928559003 YPDSHQLFVGNLPHDIDENELK ddPTM_BT-474_Trastuzumab_2h_R1 3 YPDSHQLFVGNLPHDIDENELK 22 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ;; 282.18 5.6877e-46 2283240000.0 1925940.0 1554950.0 1420070.0 1190540.0 1313950.0 1738510.0 1559360.0 1318560.0 2227640.0 1606180.0 False True 1915570.9530320496 1606705.5707628757 1620003.5125302894 1341262.2419311828 1481273.744108191 1618330.895712343 1483927.7994663212 1416957.6427120136 1678667.9708466919 1503672.2172801178 1.273928540421519 1.0685211526147151 1.0773647966048043 0.8919911045222965 0.9851041517462883 1.076252441931542 0.9868692008890669 0.9423314645495308 1.1163789232490515 1.0 20.520058680194126 4.914140516549685 1.4176034477765689 0.9982099019191036 1.47933863635858 0.6174822060498961 0.06274670515149997 1.1693296239312316 1.5579262947588959 0.016821007922368878 0.8957547774614991 82061.70130928673 -4.914140516549685 0.48112873443947646 YPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELR ddPTM_BT-474_Trastuzumab_2h_R1 3 YPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELR 35 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 ;; 368.12 8.039299999999994e-149 1418900000.0 668310.0 680984.0 665199.0 794611.0 715050.0 871430.0 833120.0 594301.0 1013420.0 829060.0 False True 664711.893216222 703650.1407764785 758853.2371866417 895208.6711266979 806107.3790666014 811190.0952255698 792818.8027725344 638650.7584193301 763676.2201322712 776148.6810060245 0.8564234011898841 0.9065919430081679 0.977716326468577 1.153398431298435 1.0385991740934806 1.0451478113370307 1.0214780005100343 0.8228458980198575 0.9839303200804428 1.0 19.565973519637286 -0.21787760664056022 6.480829963427684 1.0000000001210927 0.9758105374765768 0.004158634813805184 0.09213321529063973 13211524.750107288 2038554.3392978471 0.0979377571562323 0.023753395133902355 0.6055114966414982 0.21787760664056022 -0.024189462644515936 YPDVAS(ph)PTLR ddPTM_BT-474_Trastuzumab_2h_R1 4 YPDVASPTLR 10 0 Q8IVL1-9;Q8IVL1-13;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-5;Q8IVL1-4;Q8IVL1-10;Q8IVL1-8;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;E9PNV5 Q8IVL1-9 NAV2 Neuron navigator 2 1 YPDVAS(0.99)PT(0.01)LR;YPDVAS(0.98)PT(0.02)LR;YPDVAS(0.999)PT(0.001)LR;YPDVAS(0.954)PT(0.046)LR 181.4 1.9842e-06 1794360000.0 1589600.0 1786000.0 1522580.0 1541370.0 1609080.0 1646710.0 1554300.0 1509480.0 1868560.0 1717410.0 True False 1581041.7702211633 1845445.930340201 1736946.029497395 1736507.2839597748 1813986.8002356319 1532876.813638385 1479112.570997395 1622125.0625841296 1408078.4254212047 1607803.4234513247 0.9833551460086367 1.1478056977753852 1.080322385288154 1.0800495002257013 1.1282391701478731 0.9533981525850332 0.9199585903495088 1.0089075809417434 0.8757777256118857 1.0 20.61665959689309 2.7274839653777003 24.57044819011429 0.9542407107052578 1.0870829594607092 0.6040316489522616 0.05352617504638653 374.3175168941162 830317.1139632923 0.016210480996072887 0.015412365446653222 533.9295599530406 -2.7274839653777003 0.13284224875545136 YPDVAS(ph)PTLRR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPDVASPTLRR 11 1 Q8IVL1-9;Q8IVL1-13;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-5;Q8IVL1-4;Q8IVL1-10;Q8IVL1-8;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;E9PNV5 Q8IVL1-9 NAV2 Neuron navigator 2 1 YPDVAS(0.963)PT(0.037)LRR 69.92 0.032575 165040000.0 178230.0 225480.0 221200.0 244290.0 231630.0 215740.0 222600.0 196990.0 274210.0 226510.0 True False 177270.4294832146 232984.9654944617 252343.03729513337 275217.0889523821 261126.70752142763 200826.40159733398 211831.98758542133 211690.39409495142 206634.6197257504 212053.9378750327 0.8359685807281888 1.098706149148544 1.1899945826228597 1.2978636082418455 1.2314164506358491 0.9470533941024226 0.998953330969302 0.9982856070312851 0.9744436806805447 1.0 17.694071748694107 2.726713376005051 24.850688837546613 0.9861306648774626 1.1415784714716648 0.287814725294386 0.11499722618597172 936.1117319847096 1963578.7604966497 0.03952238199652122 0.037529140750762205 532.9830233093948 -2.726713376005051 0.1554478065942022 YPEPERPS(ph)SR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 YPEPERPS(0.627)S(0.373)R 60.301 0.059944 1471400000.0 1167100.0 889120.0 693470.0 1026200.0 744380.0 882410.0 762750.0 758550.0 1133700.0 856680.0 True False 1160816.463276999 918713.8217156093 791104.5482507054 1156116.8147813429 839172.3807140719 821411.0736697102 725852.8685120401 815156.8528388524 854314.825801697 802005.9489593524 1.4473913376618008 1.1455199589325888 0.9864073318623231 1.4415314702858115 1.04634184048503 1.0241957366220749 0.9050467386855108 1.0163975141288715 1.0652225546583765 1.0 19.613253412491478 3.0241035647323447 24.858189074564514 1.0000844257067758 1.2301470468433777 0.45478662297889005 0.13136661148428652 207.9171609827075 214424.87029856315 0.037436382695097276 0.04474294354767433 1057.069554952313 -3.0241035647323447 0.23006262113660192 YPEPERPSS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 1 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 YPEPERPS(0.123)S(0.877)R 111.93 0.0044424 991060000.0 976440.0 784500.0 683200.0 685610.0 663380.0 795760.0 594470.0 678870.0 1011800.0 761230.0 True False 971182.955532683 810611.6082597348 779388.6215191449 772408.1557028234 747857.5108386856 740750.9842175507 565713.2150040676 729530.72663201 762455.4474253834 712647.6496782092 1.3627813912965452 1.1374647887013456 1.0936521321175647 1.0838570169305948 1.0494071104793163 1.0394351045036512 0.7938189584425224 1.0236906372474872 1.0698911976622172 1.0 19.4428294238864 7.999999999999999 0.5062509843119235 0.9793726081139965 13.451852393159685 0.687463770696908 0.0740589772306 62.689007289346314 0.6538775540324103 0.03940122467784945 834.0477839219137 99999999.99999979 -7.999999999999999 12.472479785045689 YPEPERPSSR ddPTM_BT-474_Trastuzumab_2h_R1 4 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 ;;; 121.36 0.00047158 1986290000.0 1313760.0 1752720.0 1600940.0 1674830.0 1628110.0 1551880.0 1641890.0 1395100.0 1517050.0 1531180.0 False True 1306686.8621324592 1811058.2256583874 1826338.4363800632 1886863.3062758099 1835440.1579359837 1444602.1883325786 1562465.5080711027 1499209.446174259 1143193.35492852 1433458.7814908477 0.9115622151154278 1.2634184177760752 1.274078096951352 1.3163010549305125 1.2804275795269546 1.0077737895122045 1.089996816264283 1.045868542250673 0.797506959871953 1.0 20.45106899040509 2.067503588589115 1.1299300509811507 0.9317366729566513 1.212899528210847 0.41108220819013574 0.1295261198459429 0.49073388074617474 1.1648296220218717 0.09716005846656786 0.047551745362473356 116.81633823926228 -2.067503588589115 0.2811628552541957 YPESNRT(ph)PVKPS(ph)SVEEEDSFFR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 2 Y(0.008)PES(0.418)NRT(0.574)PVKPS(0.526)S(0.474)VEEEDSFFR 82.62 0.0077531000000000015 119110000.0 104090.0 82814.0 74772.0 86087.0 80828.0 112380.0 100630.0 101100.0 138250.0 97221.0 True False 103529.59100548616 85570.41392787981 85299.24767012516 96985.60537330115 91120.96669490985 104611.43511406495 95762.14245606908 108644.5953753977 104180.13995508925 91016.2725449143 1.1374844092236016 0.9401660992615678 0.9371867830341225 1.0655853361325156 1.00115027947276 1.1493706805279438 1.0521430924213337 1.1936831990321757 1.144632020649702 1.0 16.47383688333433 2.744654619540262 24.52536715662056 1.1212172018025883 1.0104253798172322 0.26394381859424676 0.07458548255512655 426.74263310785545 1717430.3235716706 0.022435577942349374 0.023239092814195953 555.4623402047513 -2.744654619540262 -0.11079182198535609 YPESNRT(ph)PVKPSSVEEEDSFFR ddPTM_BT-474_Trastuzumab_2h_R1 5 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 YPES(0.048)NRT(0.94)PVKPS(0.012)S(0.001)VEEEDSFFR;YPES(0.243)NRT(0.757)PVKPSSVEEEDSFFR;YPESNRT(0.999)PVKPSSVEEEDSFFR;YPES(0.034)NRT(0.965)PVKPSSVEEEDSFFR;YPES(0.213)NRT(0.786)PVKPS(0.001)SVEEEDSFFR 230.8 2.7438e-26 4708540000.0 2949450.0 2633110.0 2493910.0 2336160.0 2425360.0 2971000.0 2854780.0 2807230.0 3690180.0 3231950.0 True False 2933570.488914703 2720751.474601392 2845030.8505456876 2631917.6164681185 2734215.219765012 2765621.7629817314 2716683.385081355 3016719.7574251005 2780784.5848786337 3025684.1839883956 0.9695560774117971 0.8992185929381938 0.9402933940036747 0.8698586687916575 0.9036684113412078 0.9140483919693644 0.8978740740549722 0.9970372233127522 0.9190597616216045 1.0 21.528829978566957 1.7470202317324421 24.999999999999957 0.9692814663061676 0.9119476558024475 0.4038077663587264 0.032500736887709665 1.8662217351828916 5528.694199658864 0.014139810511788236 0.007841187947816618 55.84962118363131 -1.7470202317324421 -0.057333810503720106 YPEYDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPEYDGR 7 0 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8;A0A494C1S4 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 82.305 0.088784 0.0 201560.0 252890.0 222520.0 248750.0 235150.0 277940.0 260610.0 204470.0 239550.0 246690.0 False True 200474.82335542122 261307.2907747668 253848.88182148762 280241.7244950876 265094.9586567531 258726.66200038462 248003.29867312082 219728.58967762222 180516.11230554502 230946.03299806532 0.8680591770853264 1.1314647295844904 1.0991697000641452 1.2134511290671757 1.1478653918206678 1.1202905659026932 1.0738582319584524 0.9514282918185606 0.7816376404571419 1.0 17.817196239401973 1.6650733586212287 3.0461613878264315 0.8848543677910341 1.10473857717014 0.4273327199919401 0.09777094833604313 0.18322841392042688 3.9547787997072343 0.05946101765258753 0.02584376545314021 46.24591308400787 -1.6650733586212287 0.2198842093791058 YPFILPHQQVDK ddPTM_BT-474_Trastuzumab_2h_R1 1 YPFILPHQQVDK 12 0 Q9ULC4-2;Q9ULC4;Q9ULC4-3;A0A3B3IRV3 Q9ULC4-2 MCTS1 Malignant T-cell-amplified sequence 1 0 148.18 6.6213e-05 362990000.0 896980.0 657420.0 697950.0 617300.0 578530.0 756670.0 688600.0 663980.0 1010600.0 794240.0 False True 892150.7593438464 679301.827281217 796215.2933098479 695450.1167068057 652202.3662840385 704363.1839095876 655289.7872925486 713529.5592221221 761551.1713462082 743550.9232169262 1.199851592523095 0.9135915322951392 1.0708281954181063 0.9353093311995156 0.8771455268488217 0.9472964956619309 0.8812977925674258 0.9596243336435942 1.0242084940886163 1.0 19.504072025264243 6.852344816505064 1.566939270230571 0.9492522563371201 199.9334750838581 0.5759790435513815 0.06078712997815568 785.6946538680139 3.0892704120927146 0.015843503818023977 560856.5717990269 7117784.196098078 -6.852344816505064 198.98422282752097 YPGSTFMDHVLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YPGSTFMDHVLR 12 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 ; 182.08 1.7334e-05 939200000.0 533310.0 616280.0 575440.0 594790.0 540730.0 601960.0 608690.0 523310.0 644510.0 595560.0 False True 530438.7182163112 636792.5072508736 656456.9501858561 670090.3530148066 609588.7603421907 560347.9220614216 579245.3392783919 562362.0495143358 485679.146491534 557550.850915431 0.9513728072433124 1.1421245366325552 1.1773938630136305 1.201846166882535 1.0933330284427325 1.0050167103886543 1.0389103313668002 1.0086291655568373 0.8710939023662283 1.0 19.08874386515216 2.3413999509735013 1.17294914793053 0.9622115539677817 1.1233702222046082 0.43057643427303927 0.07460003244435219 0.4701327626386775 1.2738414946564642 0.04791614570004649 0.02996157013471202 219.4825265931963 -2.3413999509735013 0.16115866823682656 YPHLGQKPGGSDFLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPHLGQKPGGSDFLR 15 1 P56211;H3BMD8;P56211-2;H3BTD3 P56211 ARPP19 cAMP-regulated phosphoprotein 19 0 151.72 1.7759e-06 656310000.0 453500.0 448200.0 469410.0 485560.0 429290.0 544520.0 522840.0 414380.0 711120.0 546620.0 False True 451058.40638858615 463118.0660573783 535498.8478151377 547031.8462144111 483957.5368988204 506878.61406220554 497548.23175724014 445303.1397790045 535874.0045198053 511734.2436150731 0.8814309615126571 0.9049972164961001 1.046439347174 1.0689764326693934 0.9457204455968627 0.9905114234322767 0.9722785566242003 0.8701843688107023 1.047172455636739 1.0 18.96503525154217 4.397274784117321 8.04100810270072 0.9820050759595148 0.8872699352486064 0.33322934122746095 0.05505972560578948 0.28929339966520284 24.955841218516813 0.014722193231080984 0.040684096152955006 24961.735909147174 -4.397274784117321 -0.09473514071090838 YPHVEDYR ddPTM_BT-474_Trastuzumab_2h_R1 3 YPHVEDYR 8 0 K7ESG5;K9J957;P61289;P61289-2;A0A087WTV2;B3KQ25;P61289-3 K7ESG5 PSME3 Proteasome activator complex subunit 3 0 ;; 119.27 0.0017256 869580000.0 376987.0 449201.0 448933.0 426906.0 373387.0 393436.0 435943.0 379171.0 451728.0 394571.0 False True 374957.34387919283 464152.3837372615 512138.86420441256 480952.2558283416 420935.6212118612 366238.695368724 414854.77162601723 407466.6654113249 340405.6872450819 369389.1409707716 1.0150740839153738 1.2565404129570452 1.3864480771104644 1.3020205590353224 1.1395451964441161 0.9914712013629635 1.1230832897138228 1.1030824142271314 0.9215368008666419 1.0 18.494781930096938 3.02098200176718 4.642683038180697 1.0485352746021512 1.2504207223166637 0.4765899194459613 0.10348750628294705 0.18328269556325688 9.970788429708449 0.03206820575385405 0.037433680489175565 1049.4989339307544 -3.02098200176718 0.20188544771451244 YPHYFPLLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YPHYFPLLK 9 0 P52888;K7EP46 P52888 THOP1 Thimet oligopeptidase 0 68.227 0.058667 103190000.0 98259.0 264780.0 242010.0 255150.0 240830.0 183550.0 197430.0 162040.0 91085.0 228110.0 False True 97729.98446160113 273593.0422371097 276082.9044113704 287451.963838881 271498.2729887554 170861.62053022443 187879.55664415896 174132.2476224477 68638.3222264687 213551.82450520332 0.45764059702154347 1.281155255268931 1.2928145430321223 1.3460524840043082 1.2713460707620419 0.8000944076507354 0.8797843665324487 0.8154097864811493 0.32141295156575117 1.0 17.704226698304783 2.6800720780557237 6.607243645453707 0.7648925055949432 1.1589506454839782 0.2828459680825015 0.2900066670427057 0.3050304154341414 28.206696887155235 0.09381621048006022 0.0886982645017649 478.70953516814257 -2.6800720780557237 0.39405813988903504 YPIEHGIITNWDDMEK ddPTM_BT-474_Trastuzumab_2h_R1 46 YPIEHGIITNWDDMEK 16 0 P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 P68133 ACTA1;ACTC1;ACTG2;ACTA2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle 0 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 213.51 1.7414e-12 538332255000.0 175565617.4 163804946.4 144387944.2 140057481.6 135573731.0 185859152.4 181665721.4 165156874.2 230099813.7 176020475.6 False True 174620391.6230924 169257095.01874274 164716511.700851 157788744.4101428 152838242.03438997 173011146.65997246 172877856.4254332 177481718.8024182 173394797.7931715 164786698.14849702 1.0596752868106734 1.0271283842717527 0.9995740769829445 0.9575332607729781 0.9274913797754493 1.0499096626359004 1.0491007973813813 1.0770391105384072 1.0522378307314424 1.0 27.29602454961929 2.5263707168597804 24.99569772099572 1.0532057959672172 0.9937921722517281 0.30204890523835926 0.03822629142495375 435.834502286453 221199.16056964046 0.013187707531775995 0.012433309066339365 336.02432461085886 -2.5263707168597804 -0.05941362371548908 YPIEHGIITNWDDMEKIWHHTFYNELR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPIEHGIITNWDDMEKIWHHTFYNELR 27 1 P68133;P68032;A6NL76 P68133 ACTA1;ACTC1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1 0 213.97 2.414e-27 190310000.0 155600.0 186850.0 226080.0 293100.0 208270.0 261170.0 220720.0 104360.0 195460.0 207330.0 False True 154762.26688878515 193069.18929678967 257910.0988774128 330206.4299477799 234791.94998699572 243115.93262805056 210042.9303677188 112147.8731293424 147291.5020298135 194098.02189585683 0.7973407733738922 0.9946994173922123 1.3287621190482524 1.7012354207553542 1.2096565832750896 1.2525420416623012 1.082148742764711 0.5777898818026866 0.7588511237319187 1.0 17.56642588967757 1.9274728748383332 4.892114608287047 0.7449720323938535 1.2275066137586337 0.39609658818917104 0.2385602750595774 0.21429142328281392 9.33061833012176 0.11617671738631007 0.06928346756892896 84.61997152209176 -1.9274728748383332 0.4825345813647802 YPLFEGQETGKK ddPTM_BT-474_Trastuzumab_2h_R1 2 YPLFEGQETGKK 12 1 P41250 P41250 GARS Glycine--tRNA ligase 0 ; 130.07 0.00035762 3650100000.0 3938800.0 3770200.0 3207470.0 3195380.0 3283890.0 4318600.0 4063300.0 4351000.0 6096400.0 4218200.0 False True 3917593.9384418153 3895688.8278659745 3659053.8961709784 3599914.7803703076 3702073.9263590323 4020065.3468909175 3866742.6556866243 4675693.713930322 4594023.907574726 3948990.864617287 0.9920493798917627 0.9865023651412071 0.9265794785589083 0.9116037245427232 0.9374734085939233 1.0179981379320102 0.9791723476325049 1.1840224184422017 1.1633412345257355 1.0 21.913052599673314 1.8022532372918514 7.010722097068374 1.131534158200786 0.9622385419840258 0.6099496304934573 0.05504702941175055 0.1382966648859761 12.265496562472093 0.02444612346984972 0.014446757693782144 63.423942872821 -1.8022532372918514 -0.16929561621676026 YPNKYESIIATLCENLDSLDEPDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YPNKYESIIATLCENLDSLDEPDAR 25 1 P63010;P63010-2;P63010-3;A0A087WU93;A0A087WZQ6;A0A087X253;A0A087WYD1;K7EJ01 P63010 AP2B1 AP-2 complex subunit beta 0 ; 223.69 8.3003e-34 287540000.0 199597.0 219310.0 197764.0 205350.0 192534.0 244200.0 235070.0 234060.0 270060.0 227640.0 False True 198522.39192931168 226609.60077430555 225607.45220449715 231347.28894499005 217052.06366157514 227319.02878496744 223698.7660453954 251526.7457325972 203507.33161859968 213111.82030759082 0.9315409705701834 1.063336611020604 1.0586341568425017 1.0855676077050977 1.018489088724864 1.0666655113586423 1.049677890801759 1.18025713153574 0.9549321634289046 1.0 17.701251089266517 4.738640536254609 7.884773803564472 1.064397905138654 0.9303854893885721 0.2727078795110952 0.05688938600148786 0.11146381031583848 80.63621712686985 0.013343720903746987 0.07941319037791135 54782.33461010801 -4.738640536254609 -0.13401241575008194 YPNKYESVIATLCENLDSLDEPEAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YPNKYESVIATLCENLDSLDEPEAR 25 1 Q10567-4;Q10567-3;Q10567-2;Q10567;C9J1E7;H7C034 Q10567-4 AP1B1 AP-1 complex subunit beta-1 0 ; 201.16 5.757899999999999e-25 301800000.0 192291.0 216885.0 189683.0 184977.0 196952.0 231443.0 217258.0 198404.0 251176.0 222764.0 False True 191255.72662153843 224103.88611524875 216388.71764580804 208395.06923388108 222032.66977403744 215443.89016821975 206748.40053384312 213209.91395509816 189277.04038596372 208547.0108021442 0.9170868759322058 1.0745964914733968 1.0376016266716166 0.9992714277338298 1.0646648394528537 1.0330711015206966 0.9913755164296865 1.0223590025818103 0.9075989133478274 1.0 17.670013108016963 1.2664025092254145 24.94537997625975 0.9537994580850588 1.0203090186979786 0.22952985577419405 0.04645879665911857 231.1822432217594 207131.751842056 0.02870512915929399 0.010476675340680287 18.467261937951093 -1.2664025092254145 0.0665095606129198 YPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPS(ph)QAPSPNQPTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTK 48 0 P56545;P56545-3;P56545-2 P56545 CTBP2 C-terminal-binding protein 2 1 YPPGIVGVAPGGLPAAMEGIIPGGIPVT(0.074)HNLPT(0.074)VAHPS(0.284)QAPS(0.284)PNQPT(0.284)K 54.353 0.004606399999999999 358130000.0 57945.0 70668.0 45621.0 52290.0 52270.0 44787.0 43639.0 41979.0 47014.0 48980.0 True False 57633.03055829468 73020.14166029189 52044.04025515944 58909.90863858549 58926.274671437364 41690.980107257754 41528.014852831126 45111.686145042746 35428.029655324135 45854.054466112284 1.256879707352541 1.5924467860144467 1.1349932053145217 1.2847262761054625 1.285083191825183 0.9092103324923823 0.9056563336950225 0.9838101923654717 0.7726258902908283 1.0 15.484761683697863 2.761361486338578 5.056774049309752 0.9171426566875232 1.3183158111626823 0.7285841110461775 0.12106272804989776 0.09913178437653973 7.403397233661423 0.03758311462057458 0.03857935283561214 577.2467365705012 -2.761361486338578 0.4011731544751591 YPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPT(ph)K ddPTM_BT-474_Trastuzumab_2h_R1 1 YPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTK 48 0 P56545;P56545-3;P56545-2 P56545 CTBP2 C-terminal-binding protein 2 1 YPPGIVGVAPGGLPAAMEGIIPGGIPVT(0.193)HNLPT(0.193)VAHPS(0.193)QAPS(0.193)PNQPT(0.229)K 121.92 1.1785e-10 384730000.0 156410.0 272780.0 191290.0 214680.0 218930.0 140300.0 141140.0 93048.0 93636.0 140230.0 True False 155567.90593878453 281859.31740100763 218221.96927751368 241858.46598836358 246809.43780022554 130601.3912306755 134312.51899284084 99991.71424817017 70560.66245811737 131280.40134305682 1.1850048015336314 2.147002252563685 1.662258547696427 1.8423044377838889 1.8800173923544974 0.9948277876557754 1.0230964989348303 0.7616652084028578 0.5374805510666516 1.0 17.002292028933926 2.642273810709447 3.723263344168677 0.8301071016126325 1.7679871446996476 0.741055481797398 0.2606324998103887 0.1146003043622768 2.937068721458923 0.08419014513928383 0.07935424297984396 438.8072664771789 -2.642273810709447 0.9378800430870151 YPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPS(ph)PGQTVKPEADR ddPTM_BT-474_Trastuzumab_2h_R1 1 YPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADR 53 1 Q13363-2;Q13363;H0Y8W7;H0Y8U5 Q13363-2 CTBP1 C-terminal-binding protein 1 1 YPPGVVGVAPTGIPAAVEGIVPS(0.008)AMS(0.029)LS(0.029)HGLPPVAHPPHAPS(0.467)PGQT(0.467)VKPEADR 68.108 1.8546e-05 331860000.0 18197.0 23844.0 24419.0 20385.0 25520.0 35172.0 25513.0 12135.0 36815.0 25720.0 True False 18099.029373876758 24637.633125997618 27856.982946247106 22965.73890987887 28769.820731109252 32740.64242598233 24278.838720875363 13040.575320281432 27742.43654572592 24078.527580000147 0.7516667833505726 1.02322008869271 1.1569221935890042 0.9537850200173548 1.1948330576079633 1.3597443746176994 1.0083190776599478 0.5415852475594504 1.152164992379727 1.0 14.555459552461832 1.9849367180795743 24.852612052303833 0.8289743538803606 1.084055764700576 0.0956663742632593 0.21000801768551558 940.6436785298105 1551948.5166462609 0.08439909132894569 0.05651135063055186 96.59101240328233 -1.9849367180795743 0.2550814108202154 YPRPAS(ph)VPPSPSLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 YPRPASVPPSPSLSR 15 1 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 1 YPRPAS(0.535)VPPS(0.303)PS(0.151)LS(0.011)R;YPRPAS(0.556)VPPS(0.432)PS(0.012)LSR 116.98 0.00024605 1109550000.0 552813.0 676361.0 753265.0 839585.0 839922.0 1060870.0 1049594.0 909836.0 1206925.0 1104414.0 True False 549836.7162312984 698873.267016142 859318.1645032489 945876.3749154102 946881.08809227 987534.553919364 998821.1283815487 977732.582373594 909494.505716426 1033929.3529836042 0.5317933131936313 0.6759390910021147 0.8311188400092513 0.9148365622717838 0.9158083048516424 0.9551276894012546 0.9660438844291016 0.9456473786648542 0.8796485979355385 1.0 19.97970618091297 4.4537172319646485 1.1092364448317589 0.9458910116864727 0.43106792775800806 0.9572414726339906 0.02896005288143036 0.18502712067288138 0.26477011793471095 0.008516418864501886 0.09973680778284533 28426.09688829712 -4.4537172319646485 -0.5148230839284647 YPRPASVPPS(ph)PSLSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YPRPASVPPSPSLSR 15 1 P13807;P13807-2 P13807 GYS1 Glycogen [starch] synthase, muscle 1 YPRPASVPPS(0.976)PS(0.024)LSR;YPRPAS(0.003)VPPS(0.983)PS(0.013)LSR;YPRPASVPPS(0.996)PS(0.004)LSR 133.16 2.6048e-05 2170900000.0 338586.0 504570.0 465640.0 408510.0 450320.0 481840.0 484610.0 390510.0 474860.0 440950.0 True False 336763.0905964408 521364.3074309942 531198.0645845648 460227.3241145259 507665.5827442445 448531.534929356 461167.5629100226 419651.8391696006 357837.1157980015 412808.1934837117 0.815785868382306 1.2629698626647192 1.286791475967941 1.1148696449812237 1.229785626249387 1.0865373846971713 1.1171473100332712 1.0165782699905614 0.8668362727449614 1.0 18.65511208032639 1.633962230630778 2.2861026978552568 0.9323044708045105 1.1467681273712822 0.27669892860479106 0.12813199806365996 0.318616944900244 3.6805678450396364 0.0892365743804892 0.03452701413688459 43.04891704317164 -1.633962230630778 0.2144636565667717 YPS(ph)CESVTDEYAGHLIQILK ddPTM_BT-474_Trastuzumab_2h_R1 5 YPSCESVTDEYAGHLIQILK 20 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 YPS(0.995)CES(0.004)VT(0.001)DEYAGHLIQILK;YPS(0.97)CES(0.026)VT(0.004)DEYAGHLIQILK;YPS(0.998)CES(0.002)VTDEYAGHLIQILK;YPS(1)CESVTDEYAGHLIQILK;YPS(0.973)CES(0.024)VT(0.003)DEYAGHLIQILK 252.47 2.8643e-36 981990000.0 1030497.0 959769.0 821415.0 835168.0 813239.0 1035886.0 991572.0 965671.0 1299570.0 1060607.0 True False 1024948.9186509803 991714.3309723883 937063.0921328301 940900.1831682962 916800.1662048027 964277.6390333545 943605.8741871126 1037734.2735979791 979308.3868458257 992918.1532286633 1.0322592202772836 0.9987875916535914 0.9437465606664459 0.9476110192051372 0.9233391123162081 0.9711552114319003 0.9503360081783152 1.0451357649405317 0.9862931639042123 1.0 19.92131527497225 1.7511069142187872 24.99999999999838 1.013716760905359 0.9648592954301055 0.276897941489362 0.03215428135416347 4.533908270417055 9048.737540629834 0.015587214602224463 0.008643696548865626 56.37764287099211 -1.7511069142187872 -0.04885746547525349 YPS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YPSPQK 6 0 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 YPS(1)PQK;YPS(1)PQK 84.743 0.058221 1331610000.0 2255660.0 1973560.0 1713480.0 1753440.0 1692080.0 2338160.0 2236990.0 2243120.0 3032500.0 2291210.0 True False 2243515.777187385 2039248.7515577872 1954723.0901648493 1975425.3242157444 1907556.35825609 2176528.5026366063 2128778.2475683372 2410513.004732564 2285181.008418142 2144983.0161964316 1.0459363828277184 0.9507062462312001 0.9113000314711308 0.9209514990559908 0.8893107049577689 1.0147066369299802 0.9924452694936349 1.1237911846066646 1.0653608868522955 1.0 21.03253479395054 2.2126103560115844 2.0320656156197883 1.0716863588290402 0.9432263675028286 0.450235893488074 0.05245397994227085 0.25358862973963525 2.1035506203765024 0.02566520358755742 0.016466295837287242 163.15874496295996 -2.2126103560115844 -0.12845999132621155 YPSLGQKPGGSDFLMK ddPTM_BT-474_Trastuzumab_2h_R1 1 YPSLGQKPGGSDFLMK 16 1 A6NMQ3;Q5T5H1;O43768-2;O43768;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7;O43768-8 A6NMQ3 ENSA Alpha-endosulfine 0 59.606 0.075309 0.0 147990.0 136800.0 122640.0 132090.0 112810.0 162380.0 170120.0 146370.0 213460.0 163630.0 False True 147193.23828323474 141353.30530265352 139906.64599401064 148812.58045650733 127175.68482274444 151155.05280140464 161890.64567848988 157292.8726518 160855.6432174562 153186.99330930877 0.9608729507865482 0.9227500471742979 0.9133062995205931 0.971443966891048 0.8301989749609917 0.9867355546054662 1.0568171760614626 1.0268030545791886 1.0500607116993492 1.0 17.224934281590247 2.4865821922335845 15.351376160249082 1.0337540721495573 0.9210066799301481 0.6675327668012053 0.037982998719021575 1.6097512066054784 2612.775776873621 0.01201185950387732 0.010641645756206243 306.60708925766096 -2.4865821922335845 -0.11274739221940921 YPSS(ph)ISSS(ph)PQKDLTQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YPSSISSSPQKDLTQAK 17 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 2 Y(0.035)PS(0.429)S(0.535)IS(0.001)S(0.027)S(0.973)PQKDLTQAK 143.95 3.0164e-07 109850000.0 371800.0 220880.0 215340.0 180790.0 221680.0 363400.0 284330.0 325280.0 619390.0 327420.0 True False 369798.2701108631 228231.85727522045 245658.00023116622 203677.99546318344 249909.63399969845 338279.0133515855 270575.87165392115 349554.0453383715 466749.6339007789 306523.77528163465 1.2064260586999873 0.7445812549630794 0.8014321238391873 0.6644769896757395 0.8153026099527875 1.1035979608458564 0.8827239303225843 1.140381508798789 1.5227191870253078 1.0 18.225639454227682 1.6182989661078409 3.475515119060229 1.280504578580978 0.8752224056863173 0.3889658811841038 0.1930617642703826 0.17496311375756704 4.979070442342781 0.11643843989699063 0.05002264032635721 41.523979322572586 -1.6182989661078409 -0.40528217289466084 YPSSISS(ph)SPQKDLTQAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YPSSISSSPQKDLTQAK 17 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 YPSS(0.002)IS(0.104)S(0.447)S(0.447)PQKDLTQAK 133.84 1.1472e-05 2399500000.0 2122700.0 1485400.0 1364700.0 1294900.0 1298400.0 2018300.0 2085500.0 1843700.0 2997500.0 2140300.0 True False 2111271.6190541415 1534840.6410567395 1556837.897814955 1458834.2072309118 1463743.5437802607 1878779.6715671576 1984616.3976163345 1981286.2561188994 2258806.2894421676 2003704.221596981 1.0536842695133055 0.766001600692067 0.7769798960517901 0.7280686398255927 0.7305187701873663 0.937653198170009 0.9904737317140385 0.9888117391596779 1.1273152320065816 1.0 20.934238128990604 2.483187043517944 3.1135744866690795 1.0203272737428641 0.8025240295154318 0.5311986325817212 0.09516104423682711 0.20196986595710034 4.041119817060767 0.03482519211945624 0.03009371086292735 304.21949671003676 -2.483187043517944 -0.21780324422743236 YPSSISSS(ph)PQK ddPTM_BT-474_Trastuzumab_2h_R1 4 YPSSISSSPQK 11 0 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 YPSSIS(0.001)S(0.028)S(0.972)PQK;YPSSIS(0.011)S(0.226)S(0.763)PQK;YPSSIS(0.001)S(0.091)S(0.908)PQK;YPSSISS(0.006)S(0.994)PQK 221.27 8.9478e-12 4816400000.0 9175200.0 6874600.0 6967600.0 5675150.0 4748330.0 8031900.0 8333800.0 7104100.0 11507900.0 8043600.0 True False 9125801.742660547 7103416.9052165365 7948577.516535121 6393623.408113756 5353001.679943109 7476673.658058898 7930662.255792382 7634244.015888854 8671932.242959654 7530250.561527583 1.2118855366227403 0.943317469608281 1.055552859973185 0.8490585214759108 0.7108663431854254 0.9928851101260279 1.053173754444576 1.013810092175761 1.1516127082497067 1.0 22.84426643924916 2.4752778889827485 23.01654716233689 1.0476851382437513 0.9431861621157615 0.11813149333314621 0.12724410114440524 49.07645929869835 612724.206225336 0.045659661790360344 0.038515820364198323 298.72934661588295 -2.4752778889827485 -0.10449897612798986 YPSSISSS(ph)PQKDLTQAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YPSSISSSPQKDLTQAK 17 1 Q14157-4;Q14157-1;F8W726;Q14157-3;Q14157;Q14157-5 Q14157-4 UBAP2L Ubiquitin-associated protein 2-like 1 YPSS(0.012)IS(0.009)S(0.072)S(0.907)PQKDLTQAK;YPSSIS(0.015)S(0.097)S(0.888)PQKDLTQAK 203.71 5.72e-12 3551100000.0 5024800.0 3630500.0 3321000.0 2964600.0 3435100.0 5120700.0 4883400.0 4658100.0 7265500.0 5160500.0 True False 4997747.035107764 3751338.997816401 3788567.933350529 3339918.0560327107 3872539.623567139 4766718.0618312135 4647171.285600391 5005711.075352531 5475014.87771212 4831152.471873666 1.0344834000176955 0.7764894649167466 0.784195480355272 0.691329465479981 0.8015767761652225 0.9866627248016738 0.9619177437796904 1.0361318762955882 1.133273046045832 1.0 22.203935954477693 2.626294110715259 2.8706718937195785 1.0307450422067586 0.8055942774629364 0.5608632865055743 0.09135007633386431 0.20436471452419225 3.2606649390337714 0.032778188866836214 0.030589047871457196 422.95494871354765 -2.626294110715259 -0.22515076474382212 YQADIPEMLLEGESDER ddPTM_BT-474_Trastuzumab_2h_R1 1 YQADIPEMLLEGESDER 17 0 Q9BTC8;F6RRE2;E7EV10;E7EQY4;Q9BTC8-2;E9PCS8 Q9BTC8 MTA3 Metastasis-associated protein MTA3 0 127.71 9.1555e-05 21340000.0 23338.0 27026.0 18421.0 21442.0 23639.0 25425.0 26406.0 23086.0 24785.0 24321.0 False True 23212.350801095567 27925.544072438002 21014.516681797682 24156.55500150222 26649.286530669742 23667.429594012294 25128.64089928407 24808.794548332677 18677.06885198471 22768.81295774431 1.0194800600353826 1.2264822116227074 0.922951790275481 1.0609492487084575 1.170429331565376 1.039466995400054 1.1036429938582772 1.0895954301339417 0.8202917247660957 1.0 14.474771458700046 1.2566085579666872 24.997310306731602 0.9101458786088877 1.0815353862075738 0.37273366691268195 0.08763911099359631 197.7157178886387 273848.1073382288 0.05462385178599942 0.019860598464981144 18.055460021503368 -1.2566085579666872 0.1713895075986861 YQAVTATLEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQAVTATLEEK 11 0 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 0 126.66 0.00070463 191680000.0 101940.0 92066.0 80228.0 87489.0 80844.0 94457.0 105000.0 97085.0 133740.0 101630.0 False True 101391.16636659877 95130.36115492778 91523.40504572306 98565.09842955078 91139.00420007053 87927.40991786118 99920.74886104786 104329.97568764092 100781.56902418529 95143.88639017944 1.065661391534918 0.9998578444105574 0.9619473044268027 1.035958296104714 0.9579070990049205 0.9241519687063873 1.0502067200753056 1.0965494436478018 1.0592542815718715 1.0 16.53782333654336 2.0240358395863134 24.86782022588761 1.0653412487681755 0.9902700131896985 0.29928274737166505 0.044005473378299284 213.3357225650489 220719.23454440708 0.016472575914603986 0.012165161472769526 105.69047253004153 -2.0240358395863134 -0.07507123557847695 YQDEDT(ph)PPQEHISPQITNEVIGPELVHVSEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQDEDTPPQEHISPQITNEVIGPELVHVSEK 31 0 A0A590UJD9;A0A0C4DFT3;A0A590UJ18;A0A590UK02;E7EQD7;B4E2H8;C9JCP6;A8MUT6;A0A590UJ95;A0A590UJZ4;A0A590UJ86;C9JN61;A0A590UK13;A0A590UK52;C9IYP1;A0A590UJ08;Q12959-4;Q12959-2;A0A590UJC5;A0A590UJL2;Q12959;Q12959-3;Q12959-5;Q12959-7;Q12959-6;A0A590UKA8;A0A590UJR5;A0A590UJ68;A0A590UJS9;A0A590UJ81;C9JUA9;A0A590UJ64;A0A590UK81;A0A590UJ29 A0A590UJD9;A0A590UJ08;Q12959 DLG1 Disks large homolog 1 1 Y(0.007)QDEDT(0.991)PPQEHIS(0.001)PQITNEVIGPELVHVSEK 135.27 3.598e-06 35720000.0 27752.0 53642.0 73903.0 78104.0 70688.0 85328.0 84622.0 72191.0 62680.0 87560.0 True False 27602.586315537053 55427.441542726236 84307.90002360853 87991.9583918164 79689.69779939861 79429.47620050656 80528.51057256757 77578.25899847019 47233.35386896917 81971.84583611248 0.3367325211966473 0.6761765698620857 1.028498250389122 1.0734412223404122 0.9721593674823841 0.9689848433974645 0.9823923049575998 0.9464012699381389 0.576214350027002 1.0 16.32284086431483 4.545268434031819 2.8103208291860304 0.9492251172846027 0.3274856991504277 0.6781214222670838 0.13041909027323292 0.172993428359646 2.3297723668123824 0.03250253410547862 0.19743006251383474 35096.87379641076 -4.545268434031819 -0.621739418134175 YQDEVFGGFVTEPQEES(ph)EEEVEEPEER ddPTM_BT-474_Trastuzumab_2h_R1 8 YQDEVFGGFVTEPQEESEEEVEEPEER 27 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER 214.02 3.5521e-27 6868280000.0 3439637.0 4112102.0 3831814.0 3991356.0 4126932.0 4146895.0 4000896.0 3879893.0 4437932.0 4507048.0 True False 3421118.376571596 4248970.829251847 4371300.104475646 4496661.26035705 4652472.327957609 3860229.9093908234 3807357.3755730567 4169430.317357446 3344263.123842093 4219404.337962074 0.810806005433449 1.007007266647513 1.0359993388514495 1.0657099676133168 1.102637233909823 0.9148755606710287 0.90234475547133 0.988156143236852 0.7925912891906765 1.0 22.00860791438838 2.661223589351681 24.999977871901493 0.92321151409867 1.0097350942190053 0.1824338529508931 0.08928319738689747 206.9392871747602 66894.06214120588 0.02900006324652662 0.027341526009862747 458.3778142357788 -2.661223589351681 0.08652358012033534 YQDILVFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQDILVFR 8 0 P19623;K7EKM4 P19623 SRM Spermidine synthase 0 ; 122.52 0.0032269 244560000.0 326500.0 376750.0 322240.0 347080.0 331970.0 390280.0 317910.0 341520.0 415690.0 350290.0 False True 324742.16027756035 389289.89599981555 367608.59103970946 391020.29241308593 374244.4117596533 363300.8622202991 302531.47876586363 367005.9566034207 313248.7694606226 327934.1923016426 0.990266242133281 1.187097610247779 1.1209828059087332 1.1923742677415445 1.141218026497869 1.1078468508283066 0.9225371610154854 1.1191451371006744 0.9552183847071611 1.0 18.32304680767819 2.453616040873466 24.169055304585484 1.0175135060970268 1.132266828616664 0.4141644536145065 0.07108293614968622 161.43135087133953 165988.99785416698 0.023483265601544213 0.019648573118225876 284.1947434806698 -2.453616040873466 0.1147533225196371 YQEALHLGSQLLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQEALHLGSQLLR 13 0 O00231;O00231-2 O00231 PSMD11 26S proteasome non-ATPase regulatory subunit 11 0 ; 173.25 2.1992e-05 2322700000.0 2054970.0 3090800.0 2807200.0 3016700.0 3122300.0 2867500.0 2873200.0 2642500.0 2809200.0 2968200.0 False True 2043906.2698486282 3193675.4095719424 3202429.359380192 3398613.9106907817 3519906.397677997 2669276.4743689345 2734212.3393101213 2839696.768343113 2116910.301351443 2778766.934796132 0.7355443323635856 1.149313880764977 1.1524641808850165 1.223065478479981 1.2667152302703788 0.9605974653519366 0.9839660552570668 1.0219269319725985 0.7618164283024883 1.0 21.406013404901028 2.600897606759328 12.32494264087762 0.9559079364047023 1.116991214477221 0.21682593757572388 0.1504113730531355 0.9894956958217668 94.53257714617439 0.049088741991677204 0.046274483980874595 398.93083568969035 -2.600897606759328 0.16108327807251865 YQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQEDSDPERSDYEEQQLQK 19 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 Y(0.004)QEDS(0.996)DPERS(0.991)DY(0.009)EEQQLQK 82.479 0.0014086 0.0 302740.0 219890.0 202000.0 193810.0 172610.0 268010.0 224680.0 234470.0 274620.0 245480.0 True False 301110.0814775762 227208.90572368808 230439.8441845247 218346.32612821314 194590.86036037482 249483.0995276789 213811.37003904977 251967.34201453513 206943.58071946923 229813.25623399817 1.3102380881413687 0.9886675357505995 1.0027265091700739 0.9501032695254564 0.8467347077761278 1.0855905512850517 0.9303700471540461 1.0964003823956066 0.9004858297153981 1.0 17.810102493271394 4.738947483188514 6.427659713839856 0.9826758545305306 1.3171223073699616 0.6507458278905978 0.07297899582629455 0.07294364001726149 17.691726367910437 0.016881009959369912 0.10615653686319361 54821.06688513787 -4.738947483188514 0.334446452839431 YQEDS(ph)DPERSDYEEQQLQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YQEDSDPERSDYEEQQLQK 19 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 YQEDS(0.998)DPERS(0.002)DYEEQQLQK;YQEDS(1)DPERSDYEEQQLQK 293.2 8.075399999999997e-50 1525000000.0 931000.0 793450.0 746370.0 602670.0 698030.0 994710.0 937160.0 786120.0 885030.0 926980.0 True False 925987.5994438245 819859.5035993457 851452.4084356631 678967.960206852 786919.9829520453 925948.0389954753 891825.9905011387 844784.2662364763 666926.2152944134 867819.3427724942 1.0670280711714668 0.9447352267812709 0.9811401595583912 0.7823839902412141 0.9067785703393139 1.066982485130226 1.0276631858100196 0.973456368853884 0.768508124241307 1.0 19.727035217091764 4.741449506857349 5.766906663664597 0.9429341320579281 1.0710619571565094 0.14553677525410103 0.09258833448552342 0.309458901540275 44.423242667300755 0.022746161089652172 0.1548608439992949 55137.80928146859 -4.741449506857349 0.12812782509858134 YQEEFEHFQQELDK ddPTM_BT-474_Trastuzumab_2h_R1 2 YQEEFEHFQQELDK 14 0 P49257 P49257 LMAN1 Protein ERGIC-53 0 ; 228.19 1.7518e-12 752190000.0 593160.0 666400.0 683170.0 535080.0 518400.0 748920.0 694770.0 568440.0 1001790.0 692370.0 False True 589966.4924662713 688580.7211526937 779354.39777991 602821.0731370117 584415.1672024697 697148.9231680502 661161.3208208597 610859.8792798328 754912.2777982558 648182.3538322202 0.9101859823524016 1.062325620377704 1.2023690450259361 0.9300177173491057 0.9016215325012435 1.0755444344424483 1.0200236351883147 0.9424197923134943 1.1646603356833474 1.0 19.306040219583032 1.2466089546889283 24.999655642955414 1.0823301821774038 1.0077833449639382 0.09423345702113872 0.09500097114807929 407.3762916891789 1265414.9861846822 0.06645271876086123 0.02331312185306945 17.644483692486833 -1.2466089546889283 -0.07454683721346567 YQEEFEHFQQELDKK ddPTM_BT-474_Trastuzumab_2h_R1 2 YQEEFEHFQQELDKK 15 1 P49257 P49257 LMAN1 Protein ERGIC-53 0 ; 181.51 3.7988e-07 370180000.0 882080.0 909190.0 897450.0 905510.0 873850.0 1036200.0 959400.0 911080.0 1204060.0 1033710.0 False True 877330.9792883006 939451.8395330397 1023803.1592247625 1020147.473155969 985129.6177852605 964569.9329524303 912990.1567360879 979069.4159704985 907335.546577395 967737.7427963443 0.9065792729683073 0.9707711066620481 1.0579345146407262 1.0541569560035793 1.0179716820165154 0.9967265823127242 0.94342724930614 1.0117094463438105 0.9375841268271577 1.0 19.884256604137125 1.2619458692399121 24.984793126603503 0.9687919662746243 0.9971280086715724 0.04701920445402363 0.046176158521519794 673.1175040596615 719161.0211796064 0.03231691567607141 0.011783848293658198 18.278723746858603 -1.2619458692399121 0.02833604239694809 YQELLER ddPTM_BT-474_Trastuzumab_2h_R1 2 YQELLER 7 0 Q9H074;Q9H074-3;Q9H074-2;H0YA44 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 0 ; 142.19 0.00583 685080000.0 831870.0 995580.0 888340.0 948070.0 897730.0 976130.0 920930.0 852190.0 1050680.0 974760.0 False True 827391.3043494449 1028717.2784591811 1013410.5504103014 1068095.564792193 1012050.5942374105 908652.4306628598 876381.0976057588 915784.7451331378 791753.9923906908 912549.9822659788 0.9066805330431611 1.1272996531157053 1.1105260753979447 1.1704515758577678 1.1090357940990354 0.9957289445193557 0.960365037134286 1.0035447514437803 0.8676280836964831 1.0 19.799544054897584 2.617310882283621 3.904217577490596 0.9644740488368656 1.0931637675841142 0.39684901179586485 0.07403800996718737 0.24312507288830687 6.480353178943511 0.024803726127607662 0.023191869666687962 414.2961355079992 -2.617310882283621 0.12868971874724855 YQELPNSGPPHDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YQELPNSGPPHDR 13 0 P19525-2;P19525;C9JZT2;F8WBH4 P19525-2 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase 0 ;;; 143.93 3.3929e-06 1810760000.0 1229400.0 1460090.0 1369620.0 1471780.0 1385300.0 1511390.0 1449740.0 1312540.0 1535650.0 1433050.0 False True 1222781.046999182 1508688.2130069581 1562450.5910495473 1658107.1970949965 1561709.743683607 1406911.1667293701 1379610.5376553843 1410488.3997430722 1157209.634155751 1341591.5221041692 0.9114406485525167 1.1245510933467382 1.1646246754742307 1.235925518144599 1.1640724601734227 1.0486881763554623 1.0283387416548262 1.0513545863280682 0.8625648083559507 1.0 20.35551404657035 1.8800140096760427 1.2316388207556148 0.9511726537000897 1.1234131168353194 0.3400502780032195 0.09000218441229502 0.5279753274603406 1.4826013145799948 0.07263060909796278 0.031001131482938014 75.86020459767467 -1.8800140096760427 0.17224046313522967 YQEQGGEAS(ph)PQR ddPTM_BT-474_Trastuzumab_2h_R1 8 YQEQGGEASPQR 12 0 Q9UJU6;H0Y5J4;Q9UJU6-5 Q9UJU6 DBNL Drebrin-like protein 1 YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR 160.05 7.2501e-05 806691000.0 378969.6 374515.3 346087.9 372551.8 379130.6 432382.0 403735.2 368831.9 464826.0 447439.7 True False 376929.26978108054 386980.81536122004 394814.0680700468 419716.81968140334 427410.634626877 402492.45005774737 384204.9859577609 396356.0092684393 350275.8606492896 418883.7152736005 0.8998422617954562 0.9238382903199219 0.942538594063433 1.001988867977975 1.0203562923130278 0.960869175338681 0.9172115600311923 0.9462196662612037 0.8362126477523755 1.0 18.67619027281959 -0.5883737584355979 7.365123035194308 0.9999999999998306 0.9427274944741018 0.11839085878668032 0.049063135726716875 0.0 0.0 0.04883267493520296 0.011509971949142765 0.25800388261389495 0.5883737584355979 -0.05727250552572882 YQETFNVIER ddPTM_BT-474_Trastuzumab_2h_R1 4 YQETFNVIER 10 0 Q13011;M0R248;M0QZW4 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 0 ;;; 226.2 7.307899999999999e-09 2022660000.0 546707.0 670050.0 687290.0 619243.0 716250.0 859260.0 608650.0 569309.0 716670.0 605500.0 False True 543763.5902568586 692352.2091962211 784054.4579682284 697639.1003075839 807460.1919536447 799861.3786804727 579207.2742312079 611793.7284725262 540056.2813859947 566856.4716053694 0.9592615017993701 1.2213889121446224 1.3831622240242616 1.2307155960164498 1.4244526302520144 1.4110474498336774 1.02178823607828 1.0792744885489125 0.9527213826394626 1.0 19.11262396460294 2.2191788748684176 24.688182238025263 1.0264593388999002 1.279536547718594 0.4887194985917823 0.12896646337860618 192.1460248678873 244751.03794387812 0.05017239343910162 0.03711263933132548 165.64520735323435 -2.2191788748684176 0.2530772088186939 YQEVDRR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQEVDRR 7 1 Q96MU7-2;Q96MU7 Q96MU7-2 YTHDC1 YTH domain-containing protein 1 0 ; 122.74 0.0069128 583770000.0 388170.0 454290.0 458710.0 394490.0 404950.0 426500.0 438520.0 399800.0 501990.0 476680.0 False True 386080.13584974175 469410.7680258956 523292.38082120486 444432.39355202945 456517.98217330367 397017.0588730081 417307.11229092104 429635.10614326457 378281.2908213759 446257.87429372023 0.8651503045425919 1.0518823197659397 1.172623299139326 0.9959093590346615 1.0229914326908445 0.8896583830623848 0.9351254875925299 0.9627507566633663 0.8476742094917004 1.0 18.76751810039485 2.8038207108690076 7.206769720423544 0.9287196194981172 1.0308167783668927 0.25676879642216854 0.07977620222057881 0.368952283949139 35.58448867460173 0.02458225829362157 0.0260529462257019 636.5326878369415 -2.8038207108690076 0.10209715886877546 YQHDDGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YQHDDGR 7 0 P60983;G3V4P8 P60983 GMFB Glia maturation factor beta 0 152.63 0.0018007 139600000.0 92808.0 117580.0 99389.0 101290.0 98891.0 83158.0 93535.0 80093.0 112970.0 107590.0 False True 92308.33203993808 121493.57922138913 113382.10729532555 114113.30361450228 111484.18267712106 77409.48319287604 89010.35471160104 86069.9463640133 85130.05722044423 100723.51408756671 0.9164526563249901 1.206208702327099 1.1256766438545198 1.1329360839743419 1.1068337288172776 0.7685343774401875 0.883709782347521 0.8545169133911081 0.8451855357869476 1.0 16.62004099688226 2.7528728156510116 24.502383392178007 0.862094269073018 1.1071747402775662 0.6286778791239964 0.08704638207600383 350.46760900481723 599997.322461552 0.024924385061222545 0.026318535736413406 566.073488563642 -2.7528728156510116 0.24508047120454823 YQHTGAVLDCAFYDPTHAWSGGLDHQLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQHTGAVLDCAFYDPTHAWSGGLDHQLK 28 0 O43684;O43684-2;J3QT28;J3QSX4 O43684 BUB3 Mitotic checkpoint protein BUB3 0 344.24 1.5448999999999992e-97 1308200000.0 371250.0 399090.0 327730.0 309410.0 320570.0 410180.0 350690.0 206400.0 529240.0 380360.0 False True 369251.23124975216 412373.46939500066 373871.53531977383 348581.2742754784 361392.6893327468 381825.2220598606 333725.7849341032 221802.6160779632 398815.8934526685 356085.0991574206 1.0369746785908358 1.1580756127419296 1.0499499591654917 0.9789268775927495 1.0149053981418632 1.0722864364820293 0.9372079475489856 0.6228921586519607 1.1200016355538571 1.0 18.441862539956713 2.025656254526528 7.01481198040078 0.8497463066311096 1.0485222823571123 0.15078001950587638 0.12877965906990932 0.1929467745546457 35.43263675038557 0.04875711730977585 0.035199642751343796 106.08555542409594 -2.025656254526528 0.1987759757260027 YQILPLHSQIPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQILPLHSQIPR 12 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 200.44 1.5995e-07 3950000000.0 3538300.0 4440400.0 4269100.0 4412300.0 3867700.0 4316200.0 4258700.0 3925800.0 5045400.0 4337300.0 False True 3519250.185942085 4588196.02972152 4870152.172317595 4970896.727596685 4360228.669346051 4017831.2532419246 4052690.4111861363 4218763.130808468 3802028.7748962566 4060489.800650652 0.8667058307542507 1.1299612251177944 1.1994001737271212 1.2242111103936648 1.0738184020674966 0.9894942360397281 0.9980791998385845 1.0389788764233454 0.9363473279226118 1.0 21.953222333766362 2.8911276499174963 4.48762514360665 0.9997200439841158 1.1171529112317569 0.24233084995493737 0.09331931957339432 0.3315331508821441 10.897508420422897 0.029785791330068298 0.031986870024090015 778.2652688865195 -2.8911276499174963 0.11743286724764102 YQLDKDGVVLFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YQLDKDGVVLFK 12 1 P07237;H7BZ94;I3L398;I3L312;I3L3U6 P07237 P4HB Protein disulfide-isomerase 0 ; 217.09 3.4211999999999995e-11 11037900000.0 10931500.0 10596000.0 10149900.0 8248800.0 8914500.0 11401200.0 12342700.0 11398100.0 14681400.0 10903800.0 False True 10872646.018603818 10948681.454582734 11578917.69548766 9293097.234231478 10049708.734618878 10613061.879537974 11745636.447307203 12248684.100379031 11063365.690680977 10207910.148787154 1.0651196826899623 1.0725683607122654 1.1343083478123483 0.9103819585770581 0.984502076148557 1.0396899781488533 1.1506406576964976 1.1999208380409139 1.0838032005988476 1.0 23.283184199713233 2.2578154592348496 10.834611990005923 1.1341605369847336 1.0327472068596815 0.1601368967635568 0.07444999514832995 0.5405218851048483 297.22951203899026 0.02687304272717374 0.022118185153498084 181.0570580013953 -2.2578154592348496 -0.10141333012505216 YQPFKPLSIGGIIILK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQPFKPLSIGGIIILK 16 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 117.37 0.00032365 52638000.0 77822.0 82069.0 83756.0 73025.0 73490.0 97741.0 101650.0 88596.0 125270.0 103140.0 False True 77403.01499883708 84800.61705324183 95548.1167797974 82269.95751257804 82848.51589064338 90984.39472756567 96732.8011592907 95207.48340137223 94398.8870320002 96557.51689740355 0.8016259892130518 0.878239413958274 0.9895461259771348 0.8520305840092528 0.858022436292282 0.9422818404106273 1.0018153352273278 0.9860183490689204 0.9776441033824743 1.0 16.559100955333104 2.5028518002487794 3.7188218191634257 0.9895465997064342 0.8814416887561515 0.5963423963146397 0.044729402363290725 0.17640495897263458 5.23604025501512 0.016246365691952914 0.014380027461799113 318.31111234556835 -2.5028518002487794 -0.10810491095028274 YQPLASTAS(ph)DNDFVTPEPR ddPTM_BT-474_Trastuzumab_2h_R1 1 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 YQPLAS(0.069)T(0.27)AS(0.661)DNDFVTPEPR 124.2 3.1199000000000004e-05 73719000.0 44767.0 46792.0 37992.0 46397.0 39687.0 43798.0 48409.0 39250.0 60807.0 47775.0 True False 44525.979446081285 48349.443433638706 43340.94336761616 52270.85544280839 44740.90420672152 40770.34734940218 46067.271729661574 42179.03430746152 45821.92962205507 44725.958597764686 0.9955287900370816 1.0810152526514012 0.9690333025032638 1.1686916744009324 1.0003341596116753 0.9115589386482105 1.029989589355921 0.9430548976443749 1.024504137164433 1.0 15.448824782998704 3.0144940586385616 24.998963539120606 0.9770918532524397 1.0538675912998339 0.2442428098158851 0.05962029306121982 296.1474894084131 510783.58654021623 0.016035263673722443 0.01915923796594066 1033.9369561211388 -3.0144940586385616 0.07677573804739413 YQQELEEEIKELYENFCK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQQELEEEIKELYENFCK 18 1 Q6DD88;F5H6I7 Q6DD88 ATL3 Atlastin-3 0 169.19 1.7192e-11 74940000.0 77777.0 73472.0 65843.0 54370.0 69496.0 122030.0 69324.0 70878.0 124130.0 75037.0 False True 77358.2572738371 75917.47110523809 75113.12208238454 61253.23642531828 78345.9036649361 113594.35332772162 65970.53327660274 76167.27627119125 93539.82475678273 70248.07441759219 1.101215341704289 1.0807053678645193 1.0692552458573015 0.871956091795431 1.1152747504395077 1.6170457947709134 0.9391080655739907 1.0842614107599897 1.3315642532880247 1.0 16.100171059455757 3.0023333518253934 24.999563186195687 1.188378732846114 1.0316617127855565 0.14607727398786463 0.1862478238951662 157.78085266432214 1690427.0952314665 0.05482907754740255 0.06514374689516043 1005.3872001868108 -3.0023333518253934 -0.15671702006055743 YQQEVDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQQEVDR 7 0 P33176;O60282;O60282-2;Q12840;J3KNA1;A0A0G2JMZ6 P33176;Q12840 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-like protein 0 ; 178.87 0.0016504000000000002 608740000.0 1355710.0 1474420.0 1318620.0 1446880.0 1369380.0 1469420.0 1382490.0 1339450.0 1607990.0 1534420.0 False True 1348411.0079935426 1523495.17839429 1504270.2343494957 1630054.859648052 1543762.426048839 1367842.454042617 1315613.6770753323 1439406.5605892844 1211722.4104620907 1436492.0019169464 0.938683268820249 1.0605664189993687 1.0471831603253632 1.134746909466118 1.074675267240433 0.9522102818653225 0.9158517244228952 1.0020289418029815 0.843528824974376 1.0 20.454118529596713 2.728421658712972 19.897384018186422 0.9455392536706789 1.0561145326520807 0.43546785850221903 0.06156807676720957 42.18185929079168 82779.01394521771 0.01958460525926622 0.018761842335501582 535.0836226789371 -2.728421658712972 0.11057527898140174 YQQGDFGYCPR ddPTM_BT-474_Trastuzumab_2h_R1 4 YQQGDFGYCPR 11 0 P67870;Q5SRQ3;Q5SRQ6;N0E472;A0A0G2JM12 P67870 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta 0 ;;; 233.09 4.2512e-15 1387510000.0 1165830.0 1406120.0 1353140.0 1316360.0 1137830.0 1180690.0 1207510.0 1175180.0 1563090.0 1273660.0 False True 1159553.3008158912 1452921.8541825116 1543650.3502962783 1483011.0410305683 1282725.9060532162 1099071.6793453041 1149098.1281638457 1262877.899043125 1177887.4138329132 1192373.928364814 0.9724745511721042 1.2185119278605874 1.2946025685190838 1.2437466181974688 1.075774868553448 0.9217508477835793 0.9637061837972963 1.0591290777172544 0.987850694998198 1.0 20.18540530512483 3.0375374356329714 4.948104673897365 0.9939067958404476 1.191511085173242 0.5372718579294983 0.08527101289414485 0.1527605496527536 8.989514607646237 0.026213016393828992 0.03099548972419156 1090.2784689545745 -3.0375374356329714 0.1976042893327944 YQQPFEDFRIS(ph)QEHLADHFDSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YQQPFEDFRISQEHLADHFDSR 22 1 P19174-2;P19174;V9GY71;V9GYH5 P19174-2 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 1 YQQPFEDFRIS(1)QEHLADHFDSR 156.11 8.5742e-09 377550000.0 223430.0 240540.0 234570.0 264940.0 207470.0 286120.0 263480.0 83072.0 297840.0 231130.0 True False 222227.07770540682 248546.22849049963 267595.41708100995 298481.37683509017 233890.0747289668 266341.1978540335 250734.46580865607 89271.2544710687 224441.32285152806 216379.08551965127 1.0270266055137036 1.1486610542492888 1.2366972364189388 1.3794372784147038 1.0809273648941695 1.2309008387497078 1.1587740340361345 0.41256877602877756 1.037259780965035 1.0 17.723201534251928 1.8844619799556994 10.063194654375323 0.7573723481445556 1.1892459490371798 0.44340555622304345 0.18329764940122914 0.29304989013741706 23.900212758221652 0.07327606087720277 0.04656329491781796 76.64114422055263 -1.8844619799556994 0.4318736008926243 YQSHDYAFSSVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YQSHDYAFSSVEK 13 0 Q9UHG3;Q9UHG3-2;F8W8W4;C9JGT6;C9JM55;C9K055 Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 0 ; 159.22 4.594100000000001e-05 823510000.0 1052990.0 1224630.0 1278550.0 1013090.0 1229720.0 1540800.0 1301720.0 1205760.0 1821800.0 1324890.0 False True 1047320.818838186 1265391.0692455312 1458558.7266441807 1141347.090125543 1386317.5528785144 1434288.122653065 1238750.8305466957 1295739.9339252175 1372841.8008693054 1240334.3859046043 0.8443858613774953 1.020201555020707 1.175939926538778 0.9201930568853273 1.1176966216795168 1.1563721355729453 0.9987232835145874 1.044669847623554 1.106832009553666 1.0 20.24229768336558 4.701357489018787 3.92194675430705 1.063814850636093 0.8310758607139298 0.43786849775556047 0.07453896827879493 0.18842723432003214 5.644286936284171 0.017111890427655634 0.115847783301298 50275.62624989928 -4.701357489018787 -0.23273898992216313 YQSNPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YQSNPK 6 0 P50502;Q8NFI4 P50502 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 0 97.071 0.096521 23953000.0 60259.0 60219.0 58212.0 57989.0 63073.0 47681.0 61546.0 58449.0 73248.0 65196.0 False True 59934.5722394043 62223.35301184578 66407.74361222555 65330.401454253886 71104.97268703977 44384.92469900097 58568.7848514481 62810.761178008164 55197.01187291404 61035.1354628962 0.9819683660051686 1.0194677629522408 1.0880248418977525 1.0703736619699782 1.1649842692700356 0.7272028539362047 0.9595912978198039 1.0290918616243816 0.9043481505250167 1.0 15.897352362639003 2.7838003567743987 24.999980753462907 0.9373782483056777 1.064017906600397 0.38577911950741917 0.08810156249488478 531.1614415698748 293524.7101341013 0.02766280042493088 0.02934070365785432 607.8555085916912 -2.7838003567743987 0.12663965829471924 YQVAGAEYWDNNDHR ddPTM_BT-474_Trastuzumab_2h_R1 1 YQVAGAEYWDNNDHR 15 0 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 0 116.78 0.00042176 183130000.0 99892.0 114050.0 111330.0 112390.0 95465.0 118940.0 116060.0 100420.0 114100.0 103260.0 False True 99354.19257104443 117846.08530531921 127004.29630229282 126618.56247639355 107621.90188461398 110717.95775464382 110445.73440774479 107913.85032242785 85981.58386166865 96669.85839466615 1.027768057396124 1.2190571835142099 1.3137941692619712 1.3098039510874038 1.1132932609173256 1.1453203676230148 1.1425043570130928 1.1163133174547206 0.8894352933738523 1.0 16.560778507895243 1.4409336686273038 2.6857102011572307 0.9455418082529761 1.1892760695068676 0.5284345345888763 0.0868811300731433 0.20910998223890617 2.779298119391892 0.07334854978923093 0.024106550276287813 27.601562553406914 -1.4409336686273038 0.24373426125389153 YQVFFFGTHETAFLGPK ddPTM_BT-474_Trastuzumab_2h_R1 3 YQVFFFGTHETAFLGPK 17 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 ;; 244.08 1.7139999999999995e-20 2909461000.0 1894661.0 2170290.0 2161880.0 2153700.0 2024230.0 2391650.0 2485730.0 2488060.0 2923780.0 2413410.0 False True 1884460.355692628 2242526.7906819894 2466253.9126021788 2426358.1991761657 2282003.6919487957 2226320.864838524 2365485.743489263 2673731.6713126795 2203253.595644777 2259384.1075757435 0.8340593126126756 0.9925389769551661 1.0915602638492492 1.0739024812295332 1.0100113939445747 0.9853662586072204 1.0469604241075077 1.1833896070825778 0.9751567200358895 1.0 21.107498126902343 4.673412131400526 2.824725470605403 1.0563692186797804 0.8098549992176323 0.5292219137975299 0.059215532163588484 0.2743529572518968 3.2882894508466793 0.015646789660072085 0.14389823290445536 47142.44807630341 -4.673412131400526 -0.24651421946214813 YQYAIDEYYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQYAIDEYYR 10 0 G3V583;Q8N128;Q8N128-2 G3V583 FAM177A1 Protein FAM177A1 0 ; 170.47 1.4893e-05 247480000.0 240800.0 274270.0 242040.0 261330.0 224935.0 232730.0 237420.0 235620.0 297720.0 237910.0 False True 239503.5595553948 283398.9111502838 276117.1281506056 294414.3512052317 253579.13895580175 216641.92288749205 225935.0875675233 253203.16085411687 224350.89524361058 222726.38011500155 1.0753264136548648 1.2724083739158105 1.2397145233000084 1.3218656499208359 1.1385231458656573 0.9726819192932248 1.01440649935973 1.1368350741541215 1.0072937706246123 1.0 17.764912918090783 2.9974357890183443 7.02494459544676 1.0430958473451997 1.2317088713049469 0.6305636894204871 0.07213364788082309 0.09085049433201338 27.09765299186275 0.021694493395503348 0.02475591511237732 994.1130822257489 -2.9974357890183443 0.18861302395974722 YQYGGLNSGRPVT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 5 YQYGGLNSGRPVTPPR 16 1 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 YQYGGLNSGRPVT(1)PPR;YQYGGLNS(0.001)GRPVT(0.999)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR 137.13 2.2164e-05 13479750000.0 2016940.0 2145320.0 2141570.0 2201650.0 1997820.0 2175320.0 2064450.0 1942970.0 2677560.0 2320080.0 True False 2006081.019143098 2216725.6793266754 2443084.441139868 2480378.6642597374 2252230.5349931326 2024945.2485524816 1964584.6665351468 2087964.2876017482 2017711.215465813 2172010.5080795786 0.923605577266203 1.020586995818281 1.1248032327891286 1.1419736023527842 1.0369335353651128 0.9322907237418813 0.9045005349776917 0.9613048739105128 0.9289601537194255 1.0 21.050599652170696 2.8007002387694624 4.903876265624433 0.9411092598221584 1.0588386243794157 0.4233557140617895 0.060532076008562176 0.20690424077592215 10.192354390315048 0.02001470337366241 0.021070383533914945 631.9754950470625 -2.8007002387694624 0.11772936455725724 YQYGGLNSGRPVTPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YQYGGLNSGRPVTPPR 16 1 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 0 ; 105.63 0.001157 1608270000.0 452270.0 500850.0 418120.0 413080.0 405880.0 482570.0 528530.0 447620.0 619710.0 468680.0 False True 449835.0285719209 517520.4894797813 476987.6616358096 465375.8856459533 457566.412160761 449211.0717475913 502962.984719329 481023.6773683042 466990.7741885595 438768.44114286447 1.0252219311859148 1.179484304139538 1.0871056733100384 1.060641199339187 1.0428425776679227 1.0237998671406878 1.1463062006220328 1.0963041829430056 1.0643217022905842 1.0 18.743100236631804 -3.0771635419698056 0.9974837830235452 6.881417841223577e-05 1.0842405496021987 0.20068883309687613 0.04783175282853842 37254.73377255541 912.6819846087595 83302.46113276924 0.014560237833217918 0.000837213953685146 3.0771635419698056 1.0841717354237865 YQYPLFGLPFVHNDFQSEADWLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YQYPLFGLPFVHNDFQSEADWLR 23 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 0 86.557 0.0067507 145710000.0 57375.0 62986.0 71689.0 72057.0 55590.0 72796.0 87999.0 68190.0 92190.0 72740.0 False True 57066.09937496174 65082.45093415893 81782.18806804153 81179.4088118294 62669.056992255624 67763.78386335178 83742.15218117472 73278.6840618039 69471.00978271007 68097.67092415286 0.8380036879458319 0.955722127510759 1.2009542611101998 1.1921025742899045 0.920281944180681 0.9950969386137603 1.2297359226051456 1.07608209014111 1.0201671927970464 1.0 16.055317835589502 4.457184928309313 6.034086359009786 1.0850147928876221 0.8640823061281042 0.3877347144207707 0.09663193393802291 0.1381028847294884 17.568102284562165 0.02420975129881249 0.07347608446342128 28653.978343012404 -4.457184928309313 -0.22093248675951793 YQYVDCGR ddPTM_BT-474_Trastuzumab_2h_R1 4 YQYVDCGR 8 0 Q9NUM4 Q9NUM4 TMEM106B Transmembrane protein 106B 0 ;;; 105.14 0.014895 1061310000.0 1337120.0 1692210.0 1292990.0 1344970.0 1333500.0 1434440.0 1084840.0 1126170.0 1792080.0 1383980.0 False True 1329921.0944879982 1748534.1868874552 1475031.7531294504 1515243.0640971197 1503313.320726261 1335280.5391085555 1032362.1447087546 1210210.5239753865 1350445.896641708 1295653.211515109 1.0264483448721722 1.349538727915286 1.1384464145344724 1.1694819652592279 1.1602744525815814 1.0305848256626533 0.7967889366796942 0.934054354374804 1.0422896224388047 1.0 20.305248194200463 2.607973624390593 3.3268682281698183 0.9307895458054826 1.1781604328973385 0.5513629194885944 0.09539596705445019 0.16965460687802308 3.5053269241204816 0.031723532679201576 0.029463541780303398 405.48390881734565 -2.607973624390593 0.24737088709185595 YRADTLGELDLER ddPTM_BT-474_Trastuzumab_2h_R1 4 YRADTLGELDLER 13 1 Q86TX2;G3V4F2;A0A087X0W7;A0A087WT95;P49753 Q86TX2 ACOT1;ACOT2 Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial 0 ;;; 155.64 3.5523e-05 878470000.0 551710.0 840910.0 780990.0 852930.0 823180.0 869080.0 830890.0 646720.0 881080.0 855660.0 False True 548739.6546607431 868899.1810091703 890946.6035132288 960910.8505471174 928007.0936298794 809002.5451942655 790696.6763919628 694981.5303776185 663949.6398671243 801051.0462326171 0.6850245776988781 1.084698890408603 1.1122220084517647 1.1995625685358366 1.1584868380040734 1.0099263324092076 0.9870740199524719 0.8675870703198644 0.8288481027391605 1.0 19.611534654399325 2.0394308083408377 2.366209910268161 0.886987845476683 1.0608762299623868 0.16636316487365943 0.13864014752406056 0.46437154340491643 4.957507822616118 0.07351144789442653 0.04176482703600679 109.50420797114492 -2.0394308083408377 0.17388838448570387 YRDELKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YRDELKR 7 2 P33992;B1AHB1 P33992 MCM5 DNA replication licensing factor MCM5;DNA helicase 0 ; 138.26 0.0015764000000000002 314480000.0 291010.0 318640.0 310610.0 323210.0 325230.0 403420.0 399390.0 356020.0 538910.0 407980.0 False True 289443.2344942504 329245.73977805255 354341.1881294813 364128.3528605324 366646.11271076306 375532.5249485328 380069.97988203657 382588.0202329294 406102.85152402974 381942.3671107489 0.7578191356035733 0.8620298980410929 0.9277347019916639 0.9533594181107143 0.9599514070258917 0.9832177765176874 0.9950977231385032 1.0016904464594085 1.0632568850532238 1.0 18.542995434801565 6.0803275550801805 0.4507796862799959 1.0164872916401337 2.5386752025681206e-18 0.9424223516174421 0.01955477691717861 3.3057098465828045 0.2031246404777613 0.012297823989435776 2.320255193206512 1203171.552682655 -6.0803275550801805 -1.0164872916401337 YRDPTTVTTLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YRDPTTVTTLR 11 1 P63151;P63151-2;A0A590UJY3 P63151 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 ; 150.51 3.0874e-05 927930000.0 294380.0 325060.0 309700.0 332850.0 314100.0 315500.0 323150.0 313900.0 358460.0 314090.0 False True 292795.09078869293 335879.42559708084 353303.0680393433 374988.7758721203 354098.7731834411 293690.2276071142 307517.99994712014 337324.8119519025 270122.3361179115 294044.50729402195 0.9957509272428623 1.1422741022712837 1.2015292218537084 1.2752789682181014 1.2042352922762454 0.9987951494480612 1.0458212696339393 1.1471896382495714 0.9186443868778337 1.0 18.165675015867834 2.741425259415108 24.98795000729867 1.0426698506936602 1.1709048814386176 0.3910539230558908 0.08631552010933141 307.46706843574054 2682007.448130175 0.028337193191450394 0.028841750676385572 551.3473092431676 -2.741425259415108 0.12823503074495735 YRDQFTDQQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YRDQFTDQQK 10 1 E9PDF6;O43795;O43795-2;H7C2Y7 E9PDF6 MYO1B Unconventional myosin-Ib 0 ; 155.98 1.0726e-05 732530000.0 783790.0 802970.0 785140.0 735990.0 673550.0 885600.0 943710.0 807190.0 1239270.0 930780.0 False True 779570.1617272551 829696.371044385 895680.8874407812 829166.2585372461 759322.6000563726 824380.5564781617 898059.1419777094 867426.6166277684 933868.513867221 871376.82351915 0.8946418365580074 0.9521671321180727 1.0278915656988403 0.9515587701639436 0.8714055498857151 0.9460666547783669 1.030620872323411 0.9954667064985406 1.0717160345115577 1.0 19.732937216059586 2.2447093592002063 23.49053658497699 1.0212420110560627 0.9424644045075586 0.4749682098258238 0.04309891578704587 68.04698090853059 259966.45779083652 0.01600763354672994 0.013055827597398217 175.6747560790069 -2.2447093592002063 -0.07877760654850408 YREDIINVR ddPTM_BT-474_Trastuzumab_2h_R1 3 YREDIINVR 9 1 Q15276-2;Q15276 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 ;; 201.33 1.9745e-05 763760000.0 262063.0 316181.0 252279.0 283043.0 293255.0 312382.0 284927.0 251022.0 303517.0 288985.0 False True 260652.08192593625 326704.89344954933 287797.6903516225 318876.2147789477 330599.2859914364 290787.76760813163 271143.99248315964 269754.5363038883 228719.30226943092 270541.72988749424 0.9634450183871056 1.207595196443117 1.0637829900448417 1.1786581497484825 1.2219899907083367 1.0748351750728318 1.0022261356719937 0.9970903062387704 0.8454122858035419 1.0 18.045491615100516 2.096124397487622 1.751227390484622 0.9423012646935257 1.1310300596233491 0.4895424309679348 0.08095950797335372 0.2956537545883248 1.733165629426042 0.04536928554453123 0.02469412489229042 124.7740860714474 -2.096124397487622 0.18872879492982342 YREQEYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YREQEYR 7 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 0 ; 117.1 0.0048405 348300000.0 210034.0 280600.0 329390.0 295220.0 192507.0 177780.0 267980.0 364860.0 374620.0 292910.0 False True 208903.20028097107 289939.6013737181 375765.2488907951 332594.8217304115 217021.6253716165 165490.48704910546 255016.7836169868 392087.705921539 282299.9206508178 274216.2330271322 0.761819232854465 1.0573393054561804 1.3703245965515658 1.2128925339642567 0.791425157350708 0.6035036118110887 0.9299842711782648 1.4298486329317492 1.029479245391303 1.0 18.06495445260917 0.9876736212300261 24.228267523503682 0.9999998860665312 1.0442933151246983 0.0 0.25192086584498813 6814.87834923322 13395115.26397567 0.26614021626450857 0.06653505375115605 9.720164643763685 -0.9876736212300261 0.04429342905816702 YREWHHFLVVNMK ddPTM_BT-474_Trastuzumab_2h_R1 2 YREWHHFLVVNMK 13 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ; 98.531 0.002114 1695780000.0 1535340.0 1502610.0 1442300.0 1220310.0 960000.0 1528180.0 1501570.0 1100860.0 2345600.0 1392380.0 False True 1527073.9000323093 1552623.4655030726 1645363.3033036648 1374801.1208787966 1082250.3096342038 1422540.5135487788 1428933.3225455568 1183011.7632538115 1767558.3094297107 1303517.116323508 1.17150276042353 1.1911032437242972 1.2622490972303557 1.0546858983764944 0.8302540074706698 1.0913094241224612 1.0962137011102528 0.9075536856703695 1.3559916377738124 1.0 20.3139780961738 3.6626911318755537 6.468882028383592 1.0314837090790603 1.2060894681903849 0.23019225260444554 0.13220839922105576 0.30962633259288014 21.704812690795126 0.03427917335848707 0.05353644313521194 4599.293577144677 -3.6626911318755537 0.1746057591113246 YREYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_BT-474_Trastuzumab_2h_R1 5 YREYSPPYAPSHQQYPPSHATPLPK 25 1 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 YREYS(0.997)PPYAPS(0.003)HQQYPPSHATPLPK;Y(0.001)REY(0.001)S(0.994)PPYAPS(0.003)HQQYPPSHATPLPK;YREYS(1)PPYAPSHQQYPPSHATPLPK;YREYS(1)PPYAPSHQQYPPSHATPLPK;Y(0.11)REY(0.11)S(0.776)PPY(0.001)APS(0.003)HQQYPPSHATPLPK 181.63 1.4274e-17 2365550000.0 1045205.0 1290020.0 1197590.0 1305270.0 1180120.0 1499460.0 1505890.0 1332280.0 1699150.0 1541080.0 True False 1039577.7324131918 1332957.5358664438 1366200.262361114 1470517.0481676504 1330401.2868807465 1395805.859549169 1433044.3476415535 1431701.4987807625 1280417.2499435071 1442726.9550150326 0.7205644344548618 0.9239153196888561 0.9469569121253985 1.0192621986135473 0.922143502106318 0.9674774944054645 0.9932886764610438 0.9923579051490341 0.8874979742304501 1.0 20.460366856042157 4.825379884347666 2.05930576472508 0.9692874218670923 0.6107332472657186 0.7945432402536113 0.037290525524331576 0.38601401506863725 1.4803935128867916 0.009082910080976229 0.2792010182522526 66892.87844698106 -4.825379884347666 -0.3585541746013736 YRGDYDR ddPTM_BT-474_Trastuzumab_2h_R1 6 YRGDYDR 7 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ;;;;; 126.57 0.0035929 3547340000.0 2457800.0 3144740.0 2937860.0 3045980.0 2866100.0 2821320.0 2805220.0 2596760.0 3321810.0 2794240.0 False True 2444567.4778872505 3249410.7698645294 3351485.1516631064 3431600.755688634 3231080.8462943686 2626288.7890729127 2669520.7916189376 2790543.417280099 2503194.435473528 2615909.2109307796 0.9345001224325507 1.2421726091588403 1.281193222478313 1.3118195162696868 1.235165514457859 1.0039678663536034 1.0204944347701892 1.0667585119619583 0.9569118167456792 1.0 21.318881040124676 2.737442932811929 24.959122832745557 1.0190019843573783 1.2138743544789927 0.4740158784190889 0.10007714899020194 89.51982347100476 1999053.2483160791 0.03218003947263529 0.03193924355220657 546.3147582824132 -2.737442932811929 0.1948723701216144 YRHDENILESEPIVYR ddPTM_BT-474_Trastuzumab_2h_R1 1 YRHDENILESEPIVYR 16 1 Q96F86;H3BSQ0;H3BPN4 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 75.46300000000002 0.017681 121910000.0 50384.0 56570.0 53017.0 63467.0 51076.0 58361.0 52847.0 44194.0 66515.0 55759.0 False True 50112.73814218864 58452.89825271286 60481.332767975015 71501.91569258193 57580.225848829825 54326.641437016784 50290.588714855185 47491.980692584846 50123.26950533638 52200.41288231836 0.9600065473651288 1.1197784658234453 1.1586370572264502 1.369757665591214 1.1030607359110325 1.0407320256161927 0.9634136195097016 0.9098008630631276 0.9602082960212455 1.0 15.671773597473296 2.543096519799236 2.31068368590012 0.9467747185104874 1.1554323177857455 0.4499065822122915 0.09581855593909831 0.2710489779012617 2.886407608236057 0.038478654302677745 0.033640016595945885 349.2179188089293 -2.543096519799236 0.20865759927525807 YRLEVGIQAMEHLIHVLQTDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YRLEVGIQAMEHLIHVLQTDR 21 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 ;; 287.14 8.054999999999997e-46 1043056000.0 514271.8 630462.0 577807.8 685743.0 620332.3 647451.3 620821.6 196386.3 765822.5 573083.7 False True 511503.01776976837 651446.5465476724 659158.1158445707 772557.9934891862 699327.9414073932 602694.5155674235 590790.0874391794 211041.64293542533 577095.8063707514 536509.0076243595 0.9533912953944303 1.214232263186506 1.2286058695701991 1.4399720834325638 1.3034784718787658 1.123363274432485 1.1011745917466966 0.39336085682868466 1.0756497992943466 1.0 19.033242867498576 1.9565513453957313 10.925269600907479 0.7532138108111182 1.2167486699192935 0.39932711774977614 0.20735007601410485 0.7127643848750216 177.50332599334806 0.08480668964843918 0.054391702123428656 90.47974030266714 -1.9565513453957313 0.4635348591081754 YRLMLSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YRLMLSR 7 1 A0A0A0MRS8;Q9P2E2-3;Q9P2E2 A0A0A0MRS8 KIF17 Kinesin-like protein;Kinesin-like protein KIF17 0 62.842 0.07571699999999999 868180000.0 3577500.0 3765900.0 3438200.0 3326800.0 3441300.0 2736800.0 3833400.0 3867600.0 4961300.0 4027600.0 False True 3558239.137497617 3891245.7049653796 3922268.6746298703 3747972.538895515 3879529.156816862 2547611.457734232 3647963.79698991 4156219.9512748616 3738654.0930139883 3770555.1197981597 0.943691054617998 1.0320087046423234 1.040236397562551 0.9940108073784494 1.0289013244884047 0.6756595187688457 0.967487195144143 1.102283302915181 0.9915394349716126 1.0 21.84634550916376 1.9697754344696996 23.6881489266314 1.0407006634542328 0.9534095210654598 0.10365300621701656 0.10303859433376028 790.0400235132593 619182.6439043641 0.04467838275321839 0.028895262348773654 93.27718572455993 -1.9697754344696996 -0.087291142388773 YRNEGS(ph)PS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 2 YRNEGSPSPR 10 1 Q5T200;Q5T200-2 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 Y(0.002)RNEGS(0.998)PS(1)PR;YRNEGS(1)PS(1)PR 82.069 0.010879 272160000.0 424560.0 465160.0 361440.0 412130.0 388310.0 455000.0 445730.0 396750.0 463410.0 441790.0 True False 422274.2161330505 480642.56940484245 412327.61030720157 464305.61574335874 437758.97680631053 423546.9209547925 424168.3370460457 426357.49965567776 349208.81487586175 413594.58396455174 1.0209858458137901 1.1621104048258941 0.9969366773490952 1.1226104831758468 1.058425312561225 1.0240630254265946 1.0255655018016392 1.0308585174611955 0.8443263727694066 1.0 18.657857768071665 1.404377014763016 5.2116027436874335 0.922295039985986 1.0586204593489958 0.4522023204486332 0.05894303523337187 0.1664490610017224 7.1789569508449365 0.03811030574527914 0.013871813757803072 25.373303529248908 -1.404377014763016 0.1363254193630098 YRPETK ddPTM_BT-474_Trastuzumab_2h_R1 6 YRPETK 6 1 P62424;Q5T8U3 P62424 RPL7A 60S ribosomal protein L7a 0 ;;;;; 138.37 0.011249 7158780000.0 5371480.0 5505950.0 4932560.0 4883610.0 4744290.0 5059750.0 5707530.0 5014110.0 6803500.0 5592170.0 False True 5342560.548507533 5689212.217332936 5627021.573419897 5501874.525272184 5348447.209890068 4709981.391870346 5431434.969018055 5388288.349334681 5126868.587229297 5235272.922902395 1.020493224934997 1.0867078567088113 1.074828696858142 1.05092410773916 1.0216176479534766 0.899663009213122 1.0374693065680536 1.0292277840497865 0.979293470031167 1.0 22.319833318372215 3.1643018172344464 3.820936434104119 0.9952689895617164 1.0620965457400389 0.40346310840426036 0.03888239313492026 0.2439631873490921 6.989540728053569 0.011968897857873242 0.014873380485581737 1459.8284299993127 -3.1643018172344464 0.06682755617832248 YRPYDGAASAYAQNYR ddPTM_BT-474_Trastuzumab_2h_R1 3 YRPYDGAASAYAQNYR 16 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 0 ;; 252.25 1.451e-26 915090000.0 303417.0 424787.0 401869.0 367755.0 268553.0 297007.0 358426.0 284279.0 440503.0 337373.0 False True 301783.4365847978 438925.7785058359 458448.6620920343 414312.74529322993 302751.6327116611 276475.6051692744 341087.5650597139 305493.34251951234 331946.93808778765 315841.5663004426 0.9554899316125095 1.3897023866969749 1.4515146548378546 1.3117739699248994 0.9585553803379705 0.8753616834152805 1.079932477080158 0.9672360294367126 1.0509919323665742 1.0 18.26884152387858 3.240136536109614 24.99995778863447 0.9867992045651381 1.297618611656923 0.5294016332398196 0.13265872598418543 30.823701370110918 488972.5272093987 0.03733860375965698 0.0479964819960932 1738.347254909105 -3.240136536109614 0.3108194070917849 YRQDDDQR ddPTM_BT-474_Trastuzumab_2h_R1 2 YRQDDDQR 8 1 Q7KZF4;H7C597 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 105.94 0.0039145 1082000000.0 2286900.0 2791300.0 2455800.0 2585000.0 2661100.0 2335700.0 2514900.0 2372000.0 2820500.0 2593900.0 False True 2274587.584498476 2884206.7331235213 2801555.293803742 2912260.7349539762 2999975.3114245622 2174238.556646391 2393244.67914904 2549010.684771947 2125425.567763683 2428355.0812504804 0.9366783309659878 1.1877203442744875 1.1536843666046905 1.1992730212479095 1.235394005838605 0.8953544617234345 0.9855414875804076 1.0496861453471356 0.8752532050087156 1.0 21.211547961471414 2.73685986014269 24.999966702416817 0.9733351936574197 1.1488293302957013 0.5072971970537384 0.08886658486741178 133.79813087530945 1966728.1566156286 0.028102815487461057 0.02778292992647065 545.5817822013313 -2.73685986014269 0.17549413663828162 YRS(ph)PEPDPYLSYR ddPTM_BT-474_Trastuzumab_2h_R1 6 YRSPEPDPYLSYR 13 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 Y(0.005)RS(0.995)PEPDPYLSYR;YRS(1)PEPDPYLSYR;YRS(1)PEPDPYLSYR;YRS(1)PEPDPYLSYR;YRS(1)PEPDPYLSYR;Y(0.025)RS(0.975)PEPDPYLSYR 195.28 1.8494e-07 15112940000.0 2517420.0 2925670.0 2728200.0 2881120.0 2863060.0 2898030.0 2814190.0 2562310.0 3131080.0 2904030.0 True False 2503866.490431657 3023049.1573451366 3112306.8460605014 3245869.496592114 3227653.720313857 2697696.0073288274 2678056.878450211 2753522.5833465448 2359467.2883224655 2718692.319134834 0.9209819267920907 1.1119497179096594 1.1447808286930117 1.1939083631299046 1.1872081653362632 0.992277054796444 0.9850533139044015 1.012811403470178 0.8678684497381136 1.0 21.37448145670177 2.6272368149481924 6.299625928927433 0.9751160691423684 1.1178368901504674 0.4345504198451783 0.07990508685996706 0.24108820837564082 11.9391252657104 0.026862138955805335 0.025267380268115036 423.8740358631011 -2.6272368149481924 0.14272082100809902 YRS(ph)PYR ddPTM_BT-474_Trastuzumab_2h_R1 4 YRSPYR 6 1 Q14498-3 Q14498-3 RBM39 RNA-binding protein 39 1 YRS(0.999)PY(0.001)R;Y(0.001)RS(0.999)PYR;YRS(0.96)PY(0.04)R;YRS(0.999)PYR 78.192 0.042655 2797090000.0 547586.0 646730.0 539383.0 560060.0 587390.0 563570.0 562331.0 499628.0 661340.0 613650.0 True False 544637.8578185241 668256.0170934594 615323.437998919 630963.5385757547 662190.6347667042 524611.7324010814 535128.9012169706 536912.7784195768 498361.6185019796 574486.3316278036 0.9480431958673342 1.1632235273552287 1.0710845569735379 1.0983090525198802 1.152665604576511 0.9131840106875948 0.9314910934446187 0.9345962625398547 0.8674908193026541 1.0 19.13191304263045 2.7279084613440023 24.969581148494218 0.9263340944892882 1.0906997194832957 0.6125658059437165 0.06248999837857651 430.2927205359752 1008642.3046490126 0.018846277773930224 0.01792739952486949 534.4516981764571 -2.7279084613440023 0.16436562499400753 YRS(ph)PYSGPK ddPTM_BT-474_Trastuzumab_2h_R1 9 YRSPYSGPK 9 1 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23 Q14498-2 RBM39 RNA-binding protein 39 1 Y(0.06)RS(0.938)PY(0.001)S(0.001)GPK;YRS(0.947)PYS(0.053)GPK;YRS(0.972)PYS(0.028)GPK;YRS(0.985)PYS(0.014)GPK;YRS(0.75)PYS(0.25)GPK;Y(0.419)RS(0.581)PYSGPK;Y(0.053)RS(0.942)PY(0.004)SGPK;Y(0.002)RS(0.948)PY(0.035)S(0.015)GPK;YRS(0.711)PYS(0.289)GPK 145.01 0.00025829 20538824000.0 13132788.0 11546600.0 10679977.0 10193799.0 10149868.0 12730901.0 12743032.0 12750808.0 17599476.0 13468050.0 True False 13062082.528597912 11930921.600932913 12183624.929575795 11484332.90820623 11442393.526819069 11850843.77918744 12126602.859050447 13702338.040251078 13262320.960696088 12608507.518422287 1.0359737272244876 0.9462596253760127 0.9663019125597779 0.9108399936651086 0.9075137172342239 0.9399085309559578 0.9617794050035082 1.0867533703121164 1.051854943284803 1.0 23.58789417673701 1.826066195778673 6.189410467272127 1.052878750551851 0.9483722373639478 0.5456110068531919 0.038951339678355575 0.15640483207403114 8.617466312437337 0.017643572087000393 0.010492657884671278 66.99867219572403 -1.826066195778673 -0.10450651318790327 YRSDS(ph)QDEVEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YRSDSQDEVEK 11 1 H0YBZ4;Q15390-2;Q15390;H7C5V5;H0YF01 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 YRS(0.011)DS(0.989)QDEVEK;YRS(0.02)DS(0.98)QDEVEK 153.41 2.1694e-05 276890000.0 2287330.0 2011040.0 1563500.0 1640860.0 1703860.0 2022100.0 1955620.0 1954850.0 2631960.0 2014690.0 True False 2275015.2694262527 2077976.250700648 1783627.2098143802 1848592.7077588316 1920836.4714305573 1882316.986511398 1861019.189406118 2100730.833527167 1983348.724457118 1886110.759337114 1.2061938876939664 1.1017254635835736 0.9456640873207508 0.980108245821434 1.0184112793596745 0.9979885736789661 0.9866966614729378 1.1137897512792316 1.0515547481178564 1.0 20.846982968165662 4.522844949636056 3.9108925546717352 1.0179893347484152 1.1954988876375723 0.6573338305904664 0.043870864677670346 0.1547290314442008 4.729244780493668 0.012175344120883159 0.054648562554880965 33330.739522698685 -4.522844949636056 0.17750955288915704 YRT(ph)PSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YRTPSR 6 1 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 YRT(1)PSR 83.31299999999997 0.09236 149480000.0 47151.0 73881.0 65268.0 67529.0 70523.0 64104.0 62025.0 58834.0 89495.0 57689.0 True False 46897.14425496859 76340.08442299248 74457.1670803742 76078.16447609563 79503.68602743025 59672.64136458463 59024.613791490374 63224.49183299852 67440.15642156026 54007.23862996226 0.8683492332627961 1.4135157871345112 1.378651620952653 1.408666067846113 1.4720931498120144 1.1049008036392978 1.0929019014637154 1.1706669964407825 1.2487243956987952 1.0 15.720865165263843 2.71256808782464 24.72974919206765 1.1343112368888364 1.3235922961730833 0.2282910551123425 0.16813250972204358 988.4892365628457 940464.7234321564 0.05377173724580813 0.05071430401483669 515.903040984492 -2.71256808782464 0.18928105928424688 YRTEKPSKS(ph)PPPPPPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YRTEKPSKSPPPPPPR 16 3 A0A087X165;Q9C0H9;A0A590UJ70;Q9C0H9-2;A0A087WVV7 A0A087X165 SRCIN1 SRC kinase signaling inhibitor 1 1 YRT(0.032)EKPS(0.06)KS(0.907)PPPPPPR;YRTEKPS(0.084)KS(0.916)PPPPPPR 119.31 0.00014566 4107200000.0 3030100.0 2522500.0 2348700.0 2237980.0 2294100.0 3173200.0 3156800.0 3027600.0 4754600.0 3151600.0 True False 3013786.2782757566 2606459.887616549 2679376.544733632 2521308.0385347414 2586240.0368039873 2953844.1529093334 3004093.5238529094 3253534.8858412886 3582892.5383758903 2950462.1897794916 1.0214624300950617 0.8834073172147133 0.9081209561048061 0.8545468053339724 0.8765542042066551 1.0011462485916807 1.0181772653312415 1.1027204134700155 1.2143495859012057 1.0 21.492509539620038 2.1922811663821915 1.6084990102114447 1.114836122066137 0.9062648298368531 0.6124518334680841 0.06655357215084144 0.2346461945145988 1.1876373422811228 0.03676530911185202 0.021396552898133744 155.69733047216005 -2.1922811663821915 -0.20857129222928383 YRVPDVLVADPPIAR ddPTM_BT-474_Trastuzumab_2h_R1 6 YRVPDVLVADPPIAR 15 1 Q14697;F5H6X6;Q14697-2 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB 0 ;;;;; 92.773 0.0046635 5962940000.0 4859950.0 6954940.0 6217340.0 6764420.0 6561040.0 6401470.0 6634680.0 6341570.0 7270400.0 6154300.0 False True 4833784.569191207 7186430.973549988 7092687.429911951 7620794.878428398 7396549.553669158 5958951.446339505 6313735.181461106 6814810.155239977 5478707.338368763 5761527.305038681 0.8389762493989872 1.2473135321714388 1.2310429256681847 1.3227039420196298 1.2837827822495236 1.0342659386736166 1.0958440092680803 1.1828131317333441 0.9509123272881861 1.0 22.45801987115297 2.7256068295799736 24.397254822497633 1.077350280019474 1.1984732644023957 0.1719477361695324 0.13808894234996946 1102.5461866957628 2076539.2133517251 0.045032734762497396 0.04270691545339336 531.626755205265 -2.7256068295799736 0.12112298438292157 YS(ph)DDGNRETDEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSDDGNRETDEK 12 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 YS(1)DDGNRETDEK;YS(1)DDGNRETDEK 165.34 3.3226e-05 1272610000.0 2317800.0 1690820.0 1383880.0 1444990.0 1621480.0 2197600.0 2063760.0 1966900.0 2665500.0 2011410.0 True False 2305321.2223317865 1747097.921577728 1578718.2750994088 1627925.5858418369 1827965.8667350726 2045685.0845939568 1963928.0444712 2113680.0657158243 2008623.2408700946 1883040.0917452632 1.2242549866238586 0.9278070760344037 0.8383880311524334 0.864519875587472 0.9707524947282742 1.0863736218690643 1.0429560438359904 1.1224827739895842 1.0666917022507136 1.0 20.844632285976438 2.8019144620892384 4.951231309978446 1.0737455943182028 0.9488273641028013 0.17828608592965756 0.10235895812956967 0.3184469378727079 15.836959247541504 0.03261611396453589 0.034360851067635687 633.7448776385497 -2.8019144620892384 -0.1249182302154015 YS(ph)GAYGASVSDEELK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSGAYGASVSDEELK 15 0 C9JRZ6;Q9NX63;A0A286YEX5;F8WAR4 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 1 YS(1)GAYGASVSDEELK;YS(1)GAYGASVSDEELK 266.45 2.7337e-25 146823000.0 454100.0 325510.0 279370.0 240910.0 276750.0 460290.0 271870.0 349920.0 495640.0 332610.0 True False 451655.17605525337 336344.4035750498 318702.86767242895 271409.1812989415 311992.4720742358 428471.2357061128 258718.60945574354 376032.8072577567 373496.16323573526 311382.5450382521 1.4504832825480611 1.0801646043895339 1.0235090975741032 0.8716261897904392 1.001958770797216 1.3760284336216626 0.8308706238622368 1.2076232699927436 1.1994768788014523 1.0 18.24832854893549 4.737828153511433 5.86546499616422 1.0673092297153821 1.461567853081194 0.35976825065064444 0.15407224815926285 0.1464685773816643 23.067586210314385 0.036018699792329543 0.23125205537203167 54679.955632941885 -4.737828153511433 0.39425862336581186 YS(ph)PESQAQSVHHQRPGSR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSPESQAQSVHHQRPGSR 18 1 O75376;O75376-2;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376 NCOR1 Nuclear receptor corepressor 1 1 Y(0.22)S(0.779)PES(0.001)QAQSVHHQRPGSR;Y(0.003)S(0.997)PESQAQSVHHQRPGSR 160.25 2.4776e-11 453000000.0 137107.0 163976.0 177744.0 177561.0 181812.0 195776.0 225140.0 170041.0 202239.0 196579.0 True False 136368.83114601957 169433.8420344147 202768.8102214566 200040.2043942606 204964.6805158481 182242.46592713278 214249.118081679 182730.32287070263 152399.9083137596 184033.15992025103 0.7410014108604867 0.9206701776344938 1.1018058392809453 1.0869791318094308 1.1137377666322066 0.9902697209899878 1.1641875745355987 0.9929206396819303 0.8281111316015038 1.0 17.489606215405306 4.581340623156023 2.9603851430117256 1.0413928600850695 0.7335368714459243 0.5053247247986618 0.0891107192092094 0.23718046765940268 3.4334612683178944 0.02207845167773466 0.14110750617100232 38136.48158149116 -4.581340623156023 -0.3078559886391452 YS(ph)PPAISPLVSEK ddPTM_BT-474_Trastuzumab_2h_R1 3 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 YS(1)PPAISPLVSEK;YS(1)PPAISPLVSEK;YS(1)PPAISPLVSEK 147.68 4.4999e-05 627470000.0 656070.0 548710.0 497150.0 447000.0 480340.0 663320.0 578520.0 572030.0 802220.0 645960.0 True False 652537.7920162289 566973.4806478007 567144.3986947349 503590.15416805755 541508.4518017648 617466.249687324 550534.7774389845 614717.7833094836 604523.6301972629 604734.2797658208 1.0790487886165798 0.9375580310535022 0.9378406643565131 0.832746168057596 0.8954485795173711 1.0210538253701007 0.9103746816737018 1.0165089095784825 0.9996516659041728 1.0 19.205941835874473 1.6942835364034383 7.986558029270855 1.0055088105191077 0.9411165498333508 0.15735252708227554 0.0635927680164383 0.2212284306219528 27.719866829644992 0.03197015996630277 0.016828062210703536 49.46335113409539 -1.6942835364034383 -0.06439226068575687 YS(ph)PPIQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPPIQR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 Y(0.002)S(0.998)PPIQR 64.04 0.079515 132600000.0 468200.0 418930.0 342790.0 410690.0 605660.0 517280.0 455760.0 513440.0 414220.0 536980.0 True False 465679.2632219102 432873.8318014671 391051.85241590755 462683.3118910058 682787.2109719301 481521.6511461424 433713.1476277257 551755.499995492 312141.0312636317 502709.47666829237 0.9263387400376856 0.8610815031185386 0.7778883640857621 0.9203791322125853 1.3582143219123362 0.9578527429747847 0.8627510873718953 1.0975633553842117 0.6209173404335776 1.0 18.93936536023453 3.4741085018356093 24.980729311249952 0.9985990439409803 0.8546061920917719 0.09152833980919473 0.17690408601861257 192.97953441497353 1600107.660048913 0.04855081623963249 0.06608251260039975 2979.2606591786325 -3.4741085018356093 -0.1439928518492084 YS(ph)PPRDDDKVDNQAK ddPTM_BT-474_Trastuzumab_2h_R1 3 YSPPRDDDKVDNQAK 15 2 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 YS(1)PPRDDDKVDNQAK;YS(1)PPRDDDKVDNQAK;YS(1)PPRDDDKVDNQAK 141.97 2.4366e-06 3336040000.0 4769600.0 3404430.0 3200450.0 2847160.0 2730510.0 4985940.0 4842470.0 4558660.0 7948900.0 4450780.0 True False 4743921.0035523735 3517744.39452861 3651045.541189912 3207610.1640741117 3078224.2634992627 4641273.703440298 4608221.226068171 4898850.357606432 5990000.104802958 4166727.4098955337 1.1385244430163746 0.844246346947089 0.8762381557572179 0.7698152167229321 0.7387630532750494 1.1138894501276393 1.1059569712009805 1.1757069459288805 1.4375790675860738 1.0 21.99048329037365 2.581440124291473 4.713411000704966 1.1814551840769385 0.8671302085258842 0.514028106043547 0.1432930773450511 0.18313332713220407 6.518347314856637 0.047659578079749465 0.044406219382562534 381.4522002534323 -2.581440124291473 -0.3143249755510543 YS(ph)PRHS(ph)R ddPTM_BT-474_Trastuzumab_2h_R1 9 YSPRHSR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 Y(0.08)S(0.92)PRHS(1)R;Y(0.002)S(0.998)PRHS(1)R;Y(0.037)S(0.963)PRHS(1)R;Y(0.072)S(0.928)PRHS(1)R;Y(0.146)S(0.854)PRHS(1)R;Y(0.02)S(0.98)PRHS(1)R;Y(0.149)S(0.851)PRHS(1)R;Y(0.004)S(0.996)PRHS(1)R;Y(0.057)S(0.943)PRHS(1)R 96.64 0.0071598999999999986 50694608000.0 10469590.0 12542342.0 7490002.0 11626492.0 12702265.0 12264607.0 12741638.0 11478237.0 15426703.0 12636707.0 True False 10413222.890720805 12959806.271464154 8544529.177335534 13098404.695108905 14319823.155526796 11416783.585869431 12125276.292156037 12334801.33024648 11624998.752879517 11830221.540430833 0.8802221374411875 1.0954829736005252 0.7222628205341588 1.1071985972827258 1.2104442090613037 0.9650523911873975 1.0249407630040426 1.0426517616843607 0.9826526674204749 1.0 23.495973754988835 YS(ph)PS(ph)QNSPIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.153)S(0.846)PS(0.787)QNS(0.214)PIHHIPSR 103.1 0.0007917000000000001 466660000.0 131680.0 129020.0 109540.0 116380.0 106380.0 129650.0 120050.0 90868.0 148060.0 131350.0 True False 130971.04951102333 133314.35270576316 124962.2798612519 131113.69606728983 119926.86243634013 120687.60066327223 114242.72286446474 97649.03157835458 111572.59690235449 122967.13054560743 1.0650899059765189 1.0841462439128644 1.0162250619884512 1.066249944074778 0.9752757660052929 0.9814622828700573 0.9290508964270994 0.7941067758927448 0.9073367525720476 1.0 16.90791320515488 2.6219754453883173 1.2559757722935818 0.8784695108997005 1.057165467980541 0.5757376786066994 0.05436317210998189 0.2717084521199419 0.8757410741436719 0.027012200927288288 0.0226575481765841 418.769887583213 -2.6219754453883173 0.1786959570808404 YS(ph)PSQNS(ph)PIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 8 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.059)S(0.663)PS(0.278)QNS(1)PIHHIPSR;Y(0.065)S(0.918)PS(0.016)QNS(1)PIHHIPSR;Y(0.056)S(0.845)PS(0.103)QNS(0.997)PIHHIPSR;Y(0.484)S(0.515)PS(0.001)QNS(1)PIHHIPSR;Y(0.243)S(0.755)PS(0.43)QNS(0.572)PIHHIPSR;YS(0.959)PS(0.04)QNS(1)PIHHIPSR;Y(0.229)S(0.52)PS(0.251)QNS(1)PIHHIPSR;Y(0.241)S(0.757)PS(0.002)QNS(1)PIHHIPSR 180.04 3.0544e-07 62548102000.0 3957785.0 4094387.0 3512995.0 3839429.0 3929989.0 4071696.0 3879350.0 3063078.0 4300946.0 3815863.0 True False 3936476.7253112528 4230666.1961857965 4007594.160500076 4325500.317734473 4430449.80428023 3790229.239261418 3691691.0199438664 3291660.434354926 3241035.488023731 3572331.356415327 1.1019349361984518 1.1842871710621712 1.1218427857491684 1.2108340145901015 1.2402124445493727 1.0609959886433216 1.033412259843754 0.9214320022255601 0.9072605994971203 1.0 21.768434475115214 2.248380460962262 1.8978834151552937 0.9397073742641715 1.1702442989866517 0.7998200044238024 0.04896606500413145 0.1376848168475955 0.9992969253554594 0.024066640543566876 0.015638559782556263 177.16603306255584 -2.248380460962262 0.23053692472248022 YS(ph)PSQNS(ph)PIHHIPSRR ddPTM_BT-474_Trastuzumab_2h_R1 6 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.001)S(0.654)PS(0.345)QNS(1)PIHHIPSRR;YS(0.999)PS(0.001)QNS(1)PIHHIPSRR;YS(0.971)PS(0.028)QNS(1)PIHHIPSRR;YS(0.921)PS(0.078)QNS(1)PIHHIPSRR;Y(0.001)S(0.997)PS(0.002)QNS(1)PIHHIPSRR;Y(0.001)S(0.5)PS(0.5)QNS(1)PIHHIPSRR 217.73 1.4262e-14 10221740000.0 1869882.0 2622020.0 1939860.0 2923070.0 2862290.0 2656210.0 2837970.0 1970660.0 3639000.0 2859270.0 True False 1859814.763075421 2709292.3506554365 2212975.426434615 3293130.36229088 3226785.6653780066 2472592.454745777 2700686.5490017906 2117720.6560087204 2742217.210101768 2676788.940655798 0.6947932034640643 1.012142686898458 0.8267276484982968 1.2302540227486451 1.2054688423015758 0.9237158810660678 1.0089277148388611 0.7911421867612359 1.02444281969797 1.0 21.352071959228052 5.214328591371614 1.6983496417857735 0.9970757086322395 1.5735223851653608e-11 0.3177322617903221 0.13336690860861822 6.130616449961528 5.695502874273202 0.03744719615207562 14.91280833277386 163805.54211340813 -5.214328591371614 -0.9970757086165043 YS(ph)PSQNSPIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 6 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 YS(0.666)PS(0.334)QNSPIHHIPSR;YS(0.537)PS(0.463)QNSPIHHIPSR;YS(1)PSQNSPIHHIPSR;YS(0.917)PS(0.083)QNSPIHHIPSR;YS(0.65)PS(0.35)QNSPIHHIPSR;YS(0.638)PS(0.362)QNSPIHHIPSR 264.03 2.7309000000000003e-25 21711230000.0 873377.0 1208223.0 1293065.0 1313898.0 1393091.0 1270001.0 1226223.0 951601.0 1190556.0 1119139.0 True False 868674.8352733076 1248437.9721687746 1475117.3124775365 1480237.352083002 1570492.8813527322 1182208.820130784 1166905.9088632446 1022614.2987519671 897159.4264330657 1047714.5908768962 0.8291139999742303 1.191582118870637 1.4079381210515747 1.4128249859001212 1.4989701346416213 1.128369147881506 1.1137631555618501 0.9760428151488078 0.8563013574929583 1.0 19.99881433352281 2.0419947903081095 1.7637143892849532 0.9353336921785359 1.27538755717363 0.3680383707978323 0.17814256787496355 0.3965610551248999 2.322178958563006 0.11354542792518175 0.05890693998129596 110.15260958207085 -2.0419947903081095 0.34005386499509405 YS(ph)PSQNSPIHHIPSRR ddPTM_BT-474_Trastuzumab_2h_R1 3 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 YS(0.575)PS(0.425)QNSPIHHIPSRR;YS(0.845)PS(0.155)QNSPIHHIPSRR;YS(0.961)PS(0.039)QNSPIHHIPSRR 183.45 9.3144e-10 2706740000.0 503501.0 1070120.0 1000920.0 1115520.0 1128050.0 864690.0 885620.0 637343.0 702060.0 874090.0 True False 500790.2065602199 1105738.2972987993 1141840.8358473997 1256744.7176231588 1271700.4810238169 804916.0155613162 842779.177203058 684904.7710221775 529046.7201220251 818304.8278539005 0.611984910163124 1.3512547643140838 1.3953734561752618 1.5357904228905968 1.5540669414831625 0.9836383559807437 1.02990859703632 0.8369799953623882 0.6465154574604083 1.0 19.64227883803493 2.555276190460586 5.152115720145065 0.8817680268243961 1.3124811389872943 0.35466040264793985 0.2649293925613868 0.24539737406455348 11.522607937311578 0.09015080793088237 0.08378246059356667 359.150264376284 -2.555276190460586 0.4307131121628982 YS(ph)PTSPTYS(ph)PTSPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 Y(0.001)S(0.493)PT(0.327)S(0.121)PT(0.062)Y(0.026)S(0.957)PT(0.012)S(0.002)PK 108.14 0.0012326 479130000.0 243640.0 197480.0 169400.0 179430.0 179040.0 249860.0 220800.0 228400.0 306560.0 221100.0 True False 242328.26931094873 204053.002420819 193250.04754880432 202145.81960262774 201839.68274677917 232587.7663071746 210119.0604620891 245444.36779170006 231012.39569354162 206989.2087067667 1.1707289999559614 0.9858146890637797 0.9336237804675794 0.9766007651587268 0.9751217660468346 1.123670976667544 1.0151208450666447 1.1857834006187793 1.1160600938419336 1.0 17.659196029837474 2.737540001540959 24.99799148457317 1.1005025416575391 1.001206067345015 0.19796880315000553 0.07763409877740322 125.74321009842575 3079821.376106953 0.02456497698410192 0.024356309486922318 546.4368781992863 -2.737540001540959 -0.0992964743125242 YS(ph)SQDADEQDWEFQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSSQDADEQDWEFQKR 16 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 YS(0.799)S(0.201)QDADEQDWEFQKR;YS(0.5)S(0.5)QDADEQDWEFQKR 180.04 1.5500999999999998e-09 914680000.0 283082.0 267700.0 242158.0 252421.0 255170.0 296997.0 274542.0 260443.0 390750.0 299319.0 True False 281557.91796536715 276610.232671933 276251.74152493174 284377.47271869174 287664.38698891655 276466.2964457373 261261.3546077125 279878.5791627569 294454.89828174387 280216.2051601115 1.0047881342354523 0.987131463413695 0.985852125743711 1.0148502031001476 1.0265801252448954 0.9866178020923825 0.9323563369878325 0.9987951232257904 1.0508132394181007 1.0 18.096180864995333 1.9307794608749527 0.005136590248859161 1.1004748136488842 0.8930394957596857 0.0 0.029411329707025997 97313.44706437444 405.54048980653357 8150.805564946361 8223.1918295516 85.26670111381978 -1.9307794608749527 -0.20743531788919856 YSCPESPSQELGGPLPS(ph)PGPR ddPTM_BT-474_Trastuzumab_2h_R1 5 YSCPESPSQELGGPLPSPGPR 21 0 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 YSCPESPSQELGGPLPS(1)PGPR;YSCPESPSQELGGPLPS(1)PGPR;YSCPESPSQELGGPLPS(1)PGPR;YSCPESPSQELGGPLPS(1)PGPR;YSCPESPS(0.002)QELGGPLPS(0.998)PGPR 338.53 2.1200999999999997e-80 826060000.0 433144.0 505212.0 482959.0 494253.0 487200.0 509652.0 476162.0 408308.0 484722.0 491435.0 True False 430812.0008308227 522027.67601289717 550955.4292451182 556825.3791230979 549242.0321393583 474420.9568317621 453128.2249445168 438778.0163060127 365268.7580420307 460071.1975613284 0.9364028939746757 1.1346671532144974 1.1975438414000579 1.2103026272338466 1.1938196415048201 1.0311903012979222 0.984908917024987 0.9537176389911318 0.7939396336440723 1.0 18.811497614781224 2.267816157892188 1.7536618418647194 0.9150526055033504 1.1407851712376664 0.5331417657741898 0.0890213757703686 0.28008823147244827 1.731002341942991 0.04646430164403255 0.02999230999404066 185.27471671032475 -2.267816157892188 0.225732565734316 YSDESGNMDFDNFISCLVR ddPTM_BT-474_Trastuzumab_2h_R1 4 YSDESGNMDFDNFISCLVR 19 0 A0A0C4DGQ5;K7ELJ7;P04632;K7EKD8;K7EMQ1 A0A0C4DGQ5 CAPNS1 Calpain small subunit 1 0 ;;; 263.56 6.5981999999999995e-31 540810000.0 206420.0 238595.0 211219.0 220028.0 237993.0 231479.0 246614.0 193169.0 242990.0 244500.0 False True 205308.65765541798 246536.49034127704 240956.7992515406 247883.5222400212 268299.99785497243 215477.40157295464 234684.33866303304 207584.25167230697 183108.37039918345 228895.80067301882 0.8969524869034384 1.0770686470279907 1.052692091960879 1.0829535601403482 1.1721490611277885 0.941377696486304 1.0252889654287858 0.9068941023031011 0.7999638694147848 1.0 17.804331469860845 1.9113868177503492 1.7323933334901058 0.8886721575507298 1.0509513145994436 0.3332919038565131 0.08501685050044826 0.369944441312869 2.0710988398206336 0.05482929273788718 0.02530618526653141 81.54302487260254 -1.9113868177503492 0.16227915704871376 YSDFEWLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSDFEWLR 8 0 O60493-4;O60493;O60493-3 O60493-4 SNX3 Sorting nexin-3 0 ; 175.24 0.00062186 569080000.0 588510.0 780460.0 794630.0 668240.0 495580.0 575000.0 644380.0 499740.0 897540.0 655080.0 False True 585341.5275496081 806437.1393019679 906506.996952222 752839.1154838086 558689.1754672071 535251.6034044076 613208.8776293524 537033.1364283022 676353.2934198251 613272.233557796 0.9544562683913593 1.3149741585780887 1.4781477904083047 1.2275773698677646 0.9109970171420702 0.8727797772601495 0.9998966919991208 0.8756847400587411 1.1028598009338773 1.0 19.22616810760146 3.282742674258585 5.99890520273964 0.9475424948079497 1.2691069683990128 0.5033658105153571 0.1369174402729962 0.14268767316000902 12.31366656956978 0.03837532103985193 0.05142124339798441 1917.5322385116856 -3.282742674258585 0.3215644735910631 YSDFHDLHEK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSDFHDLHEK 10 0 Q9Y2I1;C9J715;Q9Y2I1-4;Q9Y2I1-3 Q9Y2I1 NISCH Nischarin 0 ; 145.28 1.7765e-05 362740000.0 772410.0 898940.0 878080.0 877280.0 926070.0 1054720.0 991160.0 391650.0 1243050.0 830930.0 False True 768251.4303828188 928860.6744792941 1001706.0315918198 988343.5580504555 1043999.5252530694 981809.6889438216 943213.8042011058 420876.91175840335 936716.9835166266 777899.3360050363 0.9875974882922962 1.1940628195539178 1.2877065003502388 1.270528861904128 1.3420753520816868 1.2621294857840901 1.2125139597689532 0.5410428988406779 1.204162209891078 1.0 19.56922394990214 1.9000156898822111 12.299712356776787 0.866600579895621 1.2333577625306367 0.37606237569319856 0.17794880329519294 0.6611240466365902 78.97243519843464 0.07118450769454618 0.045601358484941984 79.43569321682683 -1.9000156898822111 0.36675718263501567 YSDFVVHEIGK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSDFVVHEIGK 11 0 Q96PZ0;Q96PZ0-2;E7EUH7;H0Y863 Q96PZ0 PUS7 Pseudouridylate synthase 7 homolog 0 ; 110.86 0.0017382 700770000.0 1370030.0 1355410.0 1212030.0 1196580.0 1197610.0 1513550.0 1438740.0 1407900.0 1895910.0 1518510.0 False True 1362653.910704643 1400524.0024873542 1382673.2888463845 1348066.9053118876 1350118.5347093937 1408921.8510134635 1369142.6496794655 1512964.647171339 1428688.3843924275 1421597.391738181 0.958537148860784 0.9851762606112688 0.9726194609542691 0.9482761526901875 0.9497193386508748 0.9910835931478327 0.9631015487482153 1.0642708378364734 1.004988045627726 1.0 20.439081508835308 1.7582807945700762 24.999999999999265 1.0285736435974733 0.967400540890924 0.6014963405556791 0.020800318729166187 5.09768620604842 6468.4908527532425 0.009234181387047695 0.005120963968949785 57.31664939512962 -1.7582807945700762 -0.0611731027065493 YSDPGPVYDCLVWHDGEVWR ddPTM_BT-474_Trastuzumab_2h_R1 3 YSDPGPVYDCLVWHDGEVWR 20 0 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 TPP2 Tripeptidyl-peptidase 2 0 ;; 245.95 5.3498999999999995e-30 673382000.0 184547.0 235646.0 202720.0 216471.0 208790.0 224545.0 205192.0 188037.0 244394.0 231557.0 False True 183553.41945709905 243489.33465898468 231261.21392617255 243876.2064047283 235378.168904714 209022.73267207414 195266.0790504391 202069.27577253873 184166.37341181948 216778.83401407817 0.8467312793331965 1.1232154456701795 1.0668071676737307 1.1250000836746374 1.0857986665313826 0.9642211317480363 0.9007617369035116 0.9321448594903682 0.849558833773685 1.0 17.725864375253938 2.5604476684567605 3.9072235673690887 0.917263728984794 1.058225577386793 0.3580238015671141 0.08146217877229138 0.23368112301595154 6.640649504979543 0.02683675030753201 0.02463041550137577 363.452506668505 -2.5604476684567605 0.140961848401999 YSDVHNCSYNYK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSDVHNCSYNYK 12 0 H3BM82;Q6FIF0-2;Q6FIF0 H3BM82 ZFAND6 AN1-type zinc finger protein 6 0 147.87 6.5945e-05 164080000.0 206400.0 222600.0 203230.0 181610.0 179370.0 200000.0 208920.0 189180.0 285220.0 211870.0 False True 205288.7653331956 230009.10643545838 231843.01749317304 204601.807379107 202211.70629071593 186174.47074935926 198813.74144809615 203297.57223657495 214931.35275219206 198348.27520896724 1.0349914316971816 1.1596224176546799 1.1688683314685637 1.0315280390694168 1.0194780170267597 0.9386240972008331 1.0023467118059812 1.0249525589390351 1.0836058570499487 1.0 17.59767632662992 3.6061777756942197 5.221730668862915 1.0108298160586513 1.1243700573220872 0.520459849397658 0.047194745517365994 0.1735796794994988 6.634871050795875 0.01293748562908175 0.020256837590116174 4038.106564739566 -3.6061777756942197 0.11354024126343587 YSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPS(ph)PR ddPTM_BT-474_Trastuzumab_2h_R1 5 YSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPSPR 42 1 P04626-5;P04626-4;P04626;B4DTR1;P04626-3;P04626-2 P04626-5 ERBB2 Receptor tyrosine-protein kinase erbB-2;Receptor protein-tyrosine kinase 1 YSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPS(1)PR;YSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPS(1)PR;YSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPS(1)PR;YSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPS(1)PR;YSEDPTVPLPSETDGYVAPLTCSPQPEY(0.004)VNQPDVRPQPPS(0.996)PR 234.08 1.1157999999999996e-54 4189640000.0 1464690.0 2036450.0 2243810.0 1983080.0 2286270.0 2459370.0 2109560.0 1683430.0 1828510.0 1901070.0 True False 1456804.2717823568 2104232.0071899802 2559718.9444538555 2234137.7246702285 2577412.9327160357 2289359.54063426 2007512.5234982078 1809056.0948843323 1377898.2112786996 1779742.0850120876 0.8185479705462281 1.1823241271364826 1.4382527479741372 1.2553154434481189 1.4481946313577962 1.286343431395966 1.1279794642180265 1.0164709314451288 0.7742122990081123 1.0 20.76323675454168 1.7283792507749374 2.147649339612659 0.8916664621408493 1.251877463111881 0.39006271331501075 0.17328464736656113 0.28778785983162297 2.7460194570296443 0.1206713462687464 0.05060812510061413 53.5031375445337 -1.7283792507749374 0.36021100097103165 YSEKEDKYEEEIK ddPTM_BT-474_Trastuzumab_2h_R1 4 YSEKEDKYEEEIK 13 2 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A5F9UN72;K7EPB9;P67936-2;A0A2R8YHD2 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain 0 ;;; 161.84 2.1856e-05 3229130000.0 5317420.0 3159330.0 2508380.0 2256710.0 2269660.0 4484300.0 4264320.0 3586100.0 8267700.0 4057180.0 False True 5288791.601540902 3264486.389194686 2861538.1007701936 2542409.254614312 2558687.747671215 4174310.895906757 4058038.550315651 3853712.9918468273 6230236.1165041 3798247.2988734483 1.3924295037633663 0.8594717858847488 0.7533838309103569 0.6693638024486677 0.6736495931768623 1.0990097714661309 1.068397666344489 1.014602970425288 1.640292383898219 1.0 21.856902409841457 1.9084078607517918 1.3473162552933855 1.2621264553141651 0.8693948392122263 0.24439228265570856 0.2567108536757643 0.5928928522060783 1.9991641007674497 0.19218611473039032 0.08412059075642521 80.98561056290501 -1.9084078607517918 -0.39273161610193885 YSEMSEEKR ddPTM_BT-474_Trastuzumab_2h_R1 3 YSEMSEEKR 9 1 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 ;; 143.39 0.00016362 877710000.0 668710.0 689590.0 651270.0 587330.0 562680.0 712330.0 691450.0 672770.0 949720.0 713240.0 False True 665109.7396606648 712542.5862840421 742963.1550596809 661685.9177796985 634333.9627343481 663088.3037444557 658001.9219044909 722975.5136568393 715674.231596003 667720.412564515 0.9960901705942711 1.0671271581280233 1.1126860001271803 0.9909625425982713 0.9499993572130894 0.9930628018360727 0.9854452694913156 1.0827518525008182 1.0718172129069885 1.0 19.348884619288725 -0.65454005228283 6.229236561075371 1.0000000004419782 1.0291309025440027 0.026239301391390524 0.050141953189331075 0.0 0.0 0.05222151083478002 0.012308728145026576 0.22154397706403592 0.65454005228283 0.029130902102024514 YSESNFS(ph)VDDQDLSR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSESNFSVDDQDLSR 15 0 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 YSESNFS(1)VDDQDLSR;YSESNFS(1)VDDQDLSR 380.5 2.6468999999999996e-98 870140000.0 722450.0 917970.0 783610.0 824980.0 800740.0 870790.0 843520.0 790140.0 923620.0 832340.0 True False 718560.4094717412 948524.0765254176 893935.4767397802 929422.3834128944 902709.4926421792 810594.3369191724 802715.7150406762 849104.2590496215 696006.2268739204 779219.3485978743 0.9221542185325831 1.2172747997495057 1.1472193014050869 1.1927609152484409 1.1584793091528245 1.0402646422701827 1.0301537256294793 1.0896857997398268 0.8932096310574328 1.0 19.571669975496228 2.6515088214102267 4.71678678966191 1.021856396254555 1.1371377225730954 0.29889007231774334 0.08838278609441914 0.2958214879313016 11.452659609051702 0.028389190721637526 0.026781517455349582 448.23815453892433 -2.6515088214102267 0.11528132631854038 YSGGNYR ddPTM_BT-474_Trastuzumab_2h_R1 3 YSGGNYR 7 0 P98179 P98179 RBM3 RNA-binding protein 3 0 ;; 125.08 0.0095001 1700740000.0 1133330.0 1586130.0 1464620.0 1433410.0 1251300.0 1341570.0 1497830.0 1133510.0 1367590.0 1369010.0 False True 1127228.2772048006 1638923.378214169 1670825.7652947484 1614879.5590291598 1410645.6379638347 1248830.42361609 1425374.2406337438 1218098.2720471527 1030565.7692671282 1281638.6097315706 0.8795211603689826 1.278771851729271 1.3036637259583574 1.2600116341434064 1.1006578822241346 0.9744013750316465 1.1121498914052517 0.9504225784070863 0.8041001273229217 1.0 20.289558084440955 2.3862025073443083 1.0287170077849512 0.923360478214419 1.189858969892578 0.36678171152005656 0.13128584382366182 0.5559744384388221 1.1618478839579909 0.0877793328191741 0.05674127705049782 243.33383868893645 -2.3862025073443083 0.26649849167815887 YSGSYNDYLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YSGSYNDYLR 10 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 100.57 0.0091296 253250000.0 105120.0 132910.0 150250.0 127490.0 71405.0 88185.0 107120.0 77170.0 200910.0 105460.0 False True 104554.04559993005 137333.82900420844 171403.8940035885 143630.22092815585 80498.00349940658 82088.97851516114 101938.19636186137 82928.81726131994 151398.42255607204 98729.45251115158 1.0589954966895068 1.3910117549643706 1.7360968752888433 1.4547859557099507 0.815339308098708 0.8314538005352468 1.0325003711566956 0.8399602666889402 1.5334676604123927 1.0 16.59119290651372 3.250258116124123 24.998949108610713 0.9835576953830275 1.432127188739294 0.38410660614824255 0.2471737854765599 211.7709607611452 452577.09342210286 0.06892893581417685 0.0925730750890404 1779.3366166938206 -3.250258116124123 0.4485694933562664 YSGTLNLDR ddPTM_BT-474_Trastuzumab_2h_R1 5 YSGTLNLDR 9 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;;; 209.19 2.0504e-05 2630440000.0 1816110.0 2033220.0 2541280.0 1703357.0 1089762.0 1523032.0 2092780.0 1316419.0 2989270.0 1766260.0 False True 1806332.265548792 2100894.498592554 2899070.1347982674 1919001.821550872 1228536.7311745721 1417748.3826716915 1991544.2362040374 1414656.8704202364 2252604.462665819 1653535.7746287363 1.092405917830452 1.2705467464495965 1.753255163438594 1.1605444835215253 0.7429755981242148 0.8574041181479817 1.2044155722310836 0.8555344807933565 1.3622955712413238 1.0 20.65712282823158 3.4813857594438296 24.983854718799208 0.9905941358666032 1.3777475042106286 0.34486138331211746 0.226976538653742 182.65464198575387 1070095.1455578192 0.06159380230035629 0.08546077004402713 3029.603260062007 -3.4813857594438296 0.3871533683440255 YSHDFNFHINYGDLGFLGPEDLR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSHDFNFHINYGDLGFLGPEDLR 23 0 A0A494C039;Q9Y4L1;A0A087X054;E9PJ21;A0A087WWI4;K7EQK2;Q9Y4L1-2 A0A494C039 HYOU1 Hypoxia up-regulated protein 1 0 ; 128.55 2.423e-05 1148880000.0 638440.0 989280.0 877660.0 856050.0 978510.0 893990.0 948260.0 423310.0 936570.0 680760.0 False True 635002.7099773516 1022207.5867676106 1001226.8992425243 964425.8422272154 1103117.4484168398 832190.5755260988 902389.0410950204 454899.54172462516 705764.8728950301 637313.3139720412 0.9963744614398704 1.60393257814861 1.571012055283138 1.5132679972060405 1.7308871856790258 1.3057793667285709 1.4159268625205716 0.7137769316154307 1.1074064473820042 1.0 19.28164327452596 1.756807248606968 24.999999999999996 0.924203869027481 1.4667856322014137 0.5530583453171622 0.20855854955167344 4.937684675151861 6772.072876905275 0.09333227478675388 0.05175805591936318 57.12250555948908 -1.756807248606968 0.5425817631739327 YSHLQPGDHLTDITLK ddPTM_BT-474_Trastuzumab_2h_R1 3 YSHLQPGDHLTDITLK 16 0 Q15046;Q15046-2;H3BVA8 Q15046 KARS Lysine--tRNA ligase 0 ;; 192.24 3.274e-10 1370620000.0 1257690.0 1337020.0 1392380.0 1344240.0 1375270.0 1599290.0 1639340.0 1125120.0 1963580.0 1628870.0 False True 1250918.7367824956 1381521.902454342 1588415.001216083 1514420.646171967 1550402.4826360769 1488734.8466237127 1560038.8613130508 1209082.1676435973 1479682.0196239708 1524914.1220542314 0.8203207765545295 0.9059670196989691 1.0416422657797337 0.9931186446957889 1.016714620327281 0.976274548902609 1.023033913025543 0.7928854157471027 0.9703379345918 1.0 20.540296566638972 -3.1684804441356644 10.441798779283001 0.9996339807226434 0.9492465002520514 0.0 0.08194711601044578 0.0 0.0 0.0 0.01907786688627962 0.0006784526698840138 3.1684804441356644 -0.05038748047059205 YSHSGS(ph)S(ph)SPDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 Y(0.03)S(0.038)HS(0.038)GS(0.589)S(0.717)S(0.587)PDTK 69.92 0.025710000000000004 505140000.0 729660.0 669630.0 497360.0 557890.0 633720.0 646160.0 747620.0 651400.0 1045400.0 702450.0 True False 725731.5916328464 691918.229750117 567383.9648693828 628518.8167982498 714420.4856472794 601492.4800970291 711454.7644142526 700010.775742177 787775.1776423163 657619.0396022991 1.103574482989025 1.052156625770082 0.8627851851924987 0.9557491175717056 1.0863743940250445 0.914651863578626 1.0818646078807437 1.0644624525553803 1.1979202702505851 1.0 19.32689254344147 2.1009077238350997 10.644907986854957 1.089255807378715 0.9947147262828845 0.21984659943409057 0.08323224768688578 0.5391616416945059 52.617976547522545 0.03129736374533907 0.02311200994978655 126.15594578788415 -2.1009077238350997 -0.09454108109583059 YSHSGS(ph)SS(ph)PDTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 Y(0.071)S(0.11)HS(0.139)GS(0.687)S(0.492)S(0.501)PDTK 71.545 0.023398 255960000.0 231290.0 191650.0 139550.0 199570.0 167310.0 211160.0 230290.0 188340.0 314460.0 234250.0 True False 230044.760338735 198028.95439512856 159197.4270096557 224835.54153762665 188615.93677593608 196563.00621717327 219149.99290676852 202394.88717114183 236965.54654811852 219299.96444848506 1.0489958852354213 0.9030049543927163 0.7259345773722283 1.0252420336823262 0.8600819304749279 0.8963202830949257 0.9993161351298269 0.9229134518108217 1.0805544229980175 1.0 17.742546052567796 1.6420168145161087 1.2414496690127843 1.028163000141557 0.9062954015053872 0.18731508292937327 0.09078269522941095 0.7104289542993792 2.083070582760697 0.07613743629614596 0.02804612947242358 43.854767663272824 -1.6420168145161087 -0.1218675986361697 YSHSGS(ph)SSPDTK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 YSHSGS(0.42)S(0.29)S(0.29)PDTK;YSHSGS(0.942)S(0.029)S(0.029)PDTK 274.39 8.9702e-28 424850000.0 774610.0 688550.0 628470.0 605110.0 604410.0 735920.0 810190.0 689960.0 1074880.0 788170.0 True False 770439.5858272625 711467.9705127361 716953.1132408332 681716.8639566737 681378.0308812596 685047.5825693414 770998.0144736406 741448.3187458889 809990.2266540773 737868.3158137136 1.0441423887101449 0.9642207901665171 0.9716545593236168 0.923900443136501 0.9234412377902999 0.9284144174341976 1.0448992021339092 1.004851818211258 1.0977436072191666 1.0 19.493003842112756 2.230479610282077 24.938797364867167 1.0340759447946286 0.9568426598284072 0.45688447063934323 0.04134007892212243 164.49454838305294 507642.3493883478 0.015595314337146315 0.011718973027998068 170.01201327255782 -2.230479610282077 -0.0772332849662214 YSHSGSS(ph)SPDTK ddPTM_BT-474_Trastuzumab_2h_R1 3 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 YSHS(0.001)GS(0.122)S(0.625)S(0.248)PDT(0.005)K;YSHSGS(0.293)S(0.414)S(0.293)PDTK;YSHS(0.003)GS(0.119)S(0.601)S(0.277)PDTK 120.96 0.00040359 129108000.0 286072.0 247761.0 215630.0 194102.0 205391.0 222624.0 251950.0 207699.0 324134.0 254996.0 True False 284531.82013758685 256007.57511031284 245988.8297104408 218675.29329827355 231546.3264021656 207234.52688052654 239762.2159575332 223198.55405415173 244255.5188730772 238721.93696694088 1.1918964120041884 1.072409089683977 1.0304408251534347 0.9160251298084789 0.9699415535248067 0.8681000561302632 1.004357701700185 0.9349729517529054 1.0231800310287473 1.0 17.864971621079526 4.500783425122287 1.3988826684510924 0.9554855179239008 1.2288333839340897 0.7154800785329976 0.045611144584512237 0.39000227644680935 0.9548317059680956 0.012023049033595851 0.13305565147644607 31679.872505772364 -4.500783425122287 0.2733478660101889 YSHSGSSS(ph)PDTK ddPTM_BT-474_Trastuzumab_2h_R1 6 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 YSHSGS(0.011)S(0.267)S(0.722)PDTK;YSHSGSS(0.014)S(0.985)PDTK;YSHSGS(0.001)S(0.052)S(0.947)PDTK;YSHSGS(0.132)S(0.09)S(0.778)PDTK;YSHSGS(0.007)S(0.01)S(0.983)PDTK;YSHS(0.001)GS(0.012)S(0.053)S(0.935)PDTK 274.8 8.7209e-28 6043946000.0 8274945.0 7281877.0 6671950.0 6610260.0 6754400.0 7833009.0 8980382.0 7471486.0 11237870.0 8587815.0 True False 8230393.61555281 7524249.873957403 7611302.566370998 7447118.238234766 7614532.803534653 7291531.5247498425 8545966.61426929 8029046.224757166 8468447.518243028 8039733.294301681 1.023714756979098 0.9358830198124063 0.9467108283014385 0.9262892145331558 0.9471126124210616 0.9069369912952036 1.0629664320241086 0.998670718399068 1.0533244335661243 1.0 22.93871621234897 2.2372985989587324 24.999976438455374 1.026646055391166 0.9461789970880894 0.5755588398168949 0.03402652603222116 23.455752113278326 464632.0671745417 0.011831830168009368 0.00922184061858091 172.70248990054702 -2.2372985989587324 -0.08046705830307666 YSHSYLS(ph)DS(ph)DTEAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 2 YSHSYLS(1)DS(0.979)DT(0.021)EAK 345.3 1.3624999999999993e-81 419640000.0 651840.0 470440.0 342880.0 373380.0 429350.0 617690.0 610090.0 579670.0 805290.0 612130.0 True False 648330.5658662331 486098.3110130153 391154.5236336137 420649.8697164866 484025.1775431728 574990.5441858578 580577.615929873 622927.9189046179 606837.0698331563 573063.3393291412 1.131341897782545 0.8482453468094262 0.6825676967776726 0.7340373059091897 0.8446277127233418 1.0033629875171786 1.013112471318665 1.0870140805619337 1.0589354233400317 1.0 19.12833507988651 2.666543697527953 3.0945643352972487 1.0470249871653448 0.8309567809690314 0.3992338116551579 0.11273154439346195 0.25871884794203104 4.870455491929709 0.04074597340818308 0.03888937105490121 464.0274768142574 -2.666543697527953 -0.2160682061963134 YSHSYLS(ph)DSDTEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-4;Q92614-3;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 YSHSYLS(1)DSDTEAK;YSHSYLS(0.999)DS(0.001)DTEAK 286.09 1.0309e-33 315750000.0 432110.0 403740.0 385590.0 371250.0 350330.0 485720.0 462850.0 438060.0 710350.0 488940.0 True False 429783.5677719342 417178.24183401617 439877.7203916378 418250.2119348794 394942.44893140753 452143.3196618933 440460.17724129494 470750.2616236081 535293.7607023335 457735.43059740594 0.9389344565506087 0.911396002903998 0.9609868299194987 0.9137379018028099 0.8628181751540509 0.9877830935476981 0.9622593048268855 1.0284330863556184 1.169439210776635 1.0 18.80415444120354 1.736698821211073 1.9002155535944851 1.0861257306956176 0.926783149009488 0.6108121526366367 0.04970187712351067 0.19477802767396699 1.4191508524863268 0.033851457130563804 0.013821219250937771 54.53795147917615 -1.736698821211073 -0.15934258168612958 YSHVNKK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSHVNKK 7 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 129.4 0.0023788 324590000.0 869830.0 851880.0 787180.0 772730.0 778130.0 771850.0 995270.0 827190.0 1354800.0 1043700.0 False True 865146.9319271982 880234.3108276657 898008.1017087825 870557.5387702086 877220.2431621497 718493.8262394647 947124.987799381 888919.1181857102 1020927.6933899078 977090.1724434738 0.8854320269782964 0.9008731595635701 0.9190636924154855 0.8909694962882985 0.8977884210711353 0.7353403467795401 0.9693322218468774 0.9097615995489254 1.0448653790435807 1.0 19.898132184362293 1.4654644349659476 1.9288314798103212 1.0205364770806995 0.880661901174328 0.4566968008972655 0.057714705860550504 0.2839376053707288 2.0083139917780137 0.04841856298598522 0.015611711240529829 29.205485822593833 -1.4654644349659476 -0.13987457590637153 YSHVQEVQER ddPTM_BT-474_Trastuzumab_2h_R1 4 YSHVQEVQER 10 0 Q93008;Q93008-3;O00507;O00507-2 Q93008 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y 0 ;;; 190.53 8.9137e-07 1120390000.0 604271.0 704341.0 673430.0 684887.0 614694.0 698829.0 709478.0 519405.0 722625.0 706450.0 False True 601017.6720768196 727784.5644018735 768243.0904415082 771593.6239769537 692971.6373232157 650520.5960965205 675157.8386708434 558165.6385851484 544543.7514289067 661363.7561777255 0.908755078370685 1.1004300698423803 1.161604462393705 1.1666705602924006 1.047791976579068 0.9836048468336521 1.020857028169852 0.8439616374066239 0.8233649732728531 1.0 19.335084460069577 2.1947219328130507 1.444443873311758 0.8784813333765586 1.08592935153249 0.44109142616793484 0.08540916901988288 0.34664062869361867 1.4025465442570153 0.05232193702068291 0.02960603866034517 156.57482422132108 -2.1947219328130507 0.20744801815593128 YSHVSQHS(ph)PSKK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSHVSQHSPSKK 12 1 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 1 YSHVS(0.006)QHS(0.982)PS(0.013)KK 57.328 0.053601 48679000.0 22399.0 28833.0 26433.0 32738.0 32276.0 45889.0 50825.0 31089.0 57152.0 51295.0 True False 22278.406272762855 29792.688975083453 30154.536640245267 36882.62744329724 36386.15728516 42716.80144108671 48366.400579645284 33409.019046743226 43067.65539756426 48021.309184141035 0.4639275074183164 0.6204055966246427 0.627940744485237 0.7680471038777442 0.757708565287855 0.8895384604631702 1.007186213815641 0.695712374659217 0.8968446743594256 1.0 15.5513871152236 5.1329170656818475 0.4065255656007819 0.902608312565746 2.971212482150595e-12 0.742023314822345 0.08519869641779952 4.252431025512129 0.4352778166404246 0.06841640330688718 1.9912889744348852 135805.40833006683 -5.1329170656818475 -0.9026083125627749 down YSKEEEMDDMDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSKEEEMDDMDR 12 1 Q9HD45;Q5TB53 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 ; 176.87 2.1887e-05 2607600000.0 2430700.0 2695600.0 2405500.0 2033170.0 2587800.0 2858200.0 2662900.0 2519800.0 3123100.0 2570300.0 False True 2417613.3812761568 2785321.4164753873 2744173.4910191805 2290569.113534385 2917340.9909077007 2660619.3614790905 2534085.353734135 2707840.271285139 2353453.8523959443 2406261.2534554587 1.0047177453422382 1.1575307595863034 1.1404304030073502 0.9519203745000936 1.2123957806818846 1.1057067713068838 1.0531214555755812 1.1253309537343896 0.9780541697275467 1.0 21.198361857142782 1.232746069594531 24.995490672352975 0.9890270182200952 1.0965351716616116 0.25422182944118776 0.07173123262331735 192.13863714198425 825919.8361558329 0.058547518752490285 0.016189819684954764 17.090157675936233 -1.232746069594531 0.10750815344151643 YSKEEEMDDMDRDLGDEYGWK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSKEEEMDDMDRDLGDEYGWK 21 2 Q9HD45;Q5TB53 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 0 196.18 5.504299999999998e-22 776950000.0 332850.0 313620.0 286000.0 277650.0 320030.0 445500.0 401290.0 358140.0 617310.0 391520.0 False True 331057.9725831112 324058.65211270616 326266.3140434361 312800.4615319041 360783.92353357776 414703.63359419774 381878.0696233324 384866.2253980711 465182.22203020647 366532.8584028636 0.9032149914899 0.8841189669181768 0.8901420611104673 0.8534036017804953 0.9843153628999693 1.1314228017679895 1.041865854230189 1.0500183450812395 1.269141937389186 1.0 18.483583011213273 2.991251885195992 3.6331223932925063 1.0917472039390845 0.8842221208551092 0.6846023459455521 0.06891007845818933 0.13430417837886602 3.83414224608665 0.020803260084183577 0.023772320089226702 980.0582417370449 -2.991251885195992 -0.20752508308397533 YSKPTAPAPSAPPS(ph)PSAPEPPKADLFEQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSKPTAPAPSAPPSPSAPEPPKADLFEQK 29 2 P55198 P55198 MLLT6 Protein AF-17 1 YSKPTAPAPSAPPS(0.995)PS(0.005)APEPPKADLFEQK;YSKPTAPAPSAPPS(0.94)PS(0.06)APEPPKADLFEQK 180.47 5.7691999999999985e-18 2624500000.0 2903200.0 1678650.0 1716330.0 1397700.0 1364220.0 2449000.0 2202500.0 2101900.0 3343600.0 2306000.0 True False 2887569.493775842 1734522.850484648 1957974.3453922067 1574648.6766905892 1537945.3306345548 2279706.3943259045 2095956.6606329293 2258754.4512319337 2519614.581944565 2158829.105734075 1.3375627955478997 0.8034553758227433 0.9069612505184513 0.7293994103137476 0.7123979042850644 1.0559920598952306 0.9708765992944277 1.0462868252204154 1.1671209060745966 1.0 21.041817612560383 2.6410523810113573 24.99959269648021 1.0440490631752184 0.8838192761905594 0.1606236737577208 0.16991086683982426 83.56192013772159 21414.103117217088 0.05489514334357889 0.05175564326964448 437.57487864133975 -2.6410523810113573 -0.16022978698465895 YSLADQTSGDQS(ph)PLPPCTPTPPCAEMR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSLADQTSGDQSPLPPCTPTPPCAEMR 27 0 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 1 YSLADQT(0.001)S(0.002)GDQS(0.998)PLPPCTPTPPCAEMR;YSLADQT(0.002)S(0.016)GDQS(0.983)PLPPCTPTPPCAEMR 124.95 4.9374e-05 365240000.0 87786.0 93864.0 72307.0 82404.0 75766.0 88981.0 78563.0 92116.0 93060.0 85150.0 True False 87313.3699299414 96988.20649801371 82487.19709628934 92836.33795092763 85414.35099973445 82829.95290874374 74762.60755019532 98990.16367557016 70126.60994011287 79715.65409941737 1.0953102112296356 1.216677045352408 1.0347678637048559 1.1645935669692529 1.0714878020471357 1.0390675939940526 0.9378660740455712 1.2417907723885022 0.8797093962580358 1.0 16.28257543969979 4.429399623431377 0.17838652352625725 0.9797798748629445 1.2761633794760043 0.17930940424909703 0.09979515668444042 30.847340642756148 1.1085683643751425 0.30149326176897917 2.116315421410539 26878.16548081662 -4.429399623431377 0.29638350461305984 YSNVSS(ph)IEDSFAMEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSNVSSIEDSFAMEK 15 0 O15231-3;O15231-4;O15231-7;O15231;O15231-8;O15231-6;H0Y704;O15231-2;O15231-9;O15231-5 O15231-3;O15231-5 ZNF185 Zinc finger protein 185 1 YSNVS(0.013)S(0.987)IEDSFAMEK 112.16 0.0016563 0.0 86807.0 77446.0 60607.0 65893.0 67529.0 78457.0 55452.0 71196.0 110610.0 92907.0 True False 86339.64075716429 80023.7432929044 69139.93879451235 74235.04704383847 76128.4178742585 73033.4522579123 52769.57491278881 76509.00704596254 83351.64759806446 86977.59571831554 0.9926652955179709 0.9200500730333845 0.794916647482738 0.8534961955519567 0.8752646844919347 0.8396812035876163 0.6067030765449949 0.8796403995086686 0.9583116998083734 1.0 16.408356209146973 4.459512126948596 3.9857666302525594 0.8369090689083296 0.9819003775521005 0.15584597511963016 0.10000886984990914 0.31804762732010955 11.149631886720037 0.024446602554722155 0.08969148076643421 28807.93490002295 -4.459512126948596 0.14499130864377086 YSPDEMNNS(ph)PNFEEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPDEMNNSPNFEEK 15 0 Q14687;Q14687-2;Q14687-3;H0Y613;H7C3B5 Q14687 GSE1 Genetic suppressor element 1 1 YSPDEMNNS(1)PNFEEK 132.81 4.736e-05 66831000.0 134890.0 99735.0 106570.0 98387.0 94966.0 132360.0 133230.0 118700.0 162830.0 133400.0 True False 134163.767227688 103054.61918391923 121574.12967695452 110842.78411215356 107059.35719241865 123210.26474192599 126785.15591197537 127557.99674638706 122702.72831021475 124886.29779051393 1.0742873285645493 0.8251875586606349 0.9734785306942536 0.8875496037049865 0.8572546315049034 0.9865795281128492 1.0152046954314125 1.0213930511444471 0.9825155399837224 1.0 16.93025567120583 2.542247516775585 7.7246195649251215 1.0075839673231 0.9189038415677071 0.26711179569757626 0.06451890736254254 0.3530381112944988 37.90255580765875 0.019610147326762525 0.01840279076368414 348.5358989617107 -2.542247516775585 -0.08868012575539286 YSPKT(ph)PPR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSPKTPPR 8 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;P0DJD0;A0A1W2PNU4;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 YS(0.007)PKT(0.993)PPR;YS(0.001)PKT(0.999)PPR 91.549 0.02006 1058280000.0 1429230.0 1471420.0 1278230.0 1366260.0 1278160.0 1601740.0 1630080.0 1497770.0 2155900.0 1745750.0 True False 1421535.1844823826 1520395.325207828 1458193.6734256689 1539228.3759142049 1440926.099752142 1491015.4838903912 1551226.8028896851 1609541.2029219554 1624607.3325799427 1634334.7403882286 0.8697943874978168 0.9302839177527764 0.8922246082092594 0.9418072919067781 0.881659102106498 0.9123072813934111 0.9491487665012851 0.9848295842622892 0.9940480933508302 1.0 20.64027207229285 1.947102407513141 1.800104262555898 0.9961437331892893 0.9050943421502049 0.7981208687407317 0.0200441571567625 0.14474916292856693 0.8714649869446905 0.011882353593820576 0.005709831655534643 88.5324346482815 -1.947102407513141 -0.09104939103908438 YSPPAIS(ph)PLVSEK ddPTM_BT-474_Trastuzumab_2h_R1 4 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK 230.57 4.0544e-12 448329000.0 767434.0 763266.0 648060.0 635256.0 671142.0 740235.0 720431.0 626394.0 860080.0 702039.0 True False 763302.220613933 788670.8474059587 739301.2149615018 715679.3444657341 756607.9555297067 689064.2967757601 685581.0002163195 673138.7010442818 648124.8084815411 657234.2699741725 1.1613853012319775 1.1999843639269623 1.1248671116777802 1.088925786681602 1.1511997929740325 1.048430260343604 1.0431303289210117 1.0241990288649043 0.9861397040464897 1.0 19.326048182711364 2.814350279952278 0.5207794083466046 0.9863215599215485 1.1877871019487263 0.8539181490619275 0.02669476930919996 0.3566284524191281 0.20212244291219206 0.02294214285952746 0.031049023379906972 652.154176555082 -2.814350279952278 0.2014655420271778 YSPS(ph)QNS(ph)PIHHIPSRR ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 YS(0.098)PS(0.902)QNS(1)PIHHIPSRR 143.4 1.444e-06 620750000.0 117130.0 186660.0 165620.0 192670.0 188960.0 201270.0 195750.0 160420.0 260360.0 209240.0 True False 116499.38509436631 192872.86526164736 188937.85640515343 217062.00224509992 213022.93594633244 187356.67863861762 186280.82466238205 172391.35499625426 196197.76664525885 195886.1240606235 0.594730155865005 0.9846172932696162 0.9645290462058472 1.1081030026298486 1.087483541613215 0.95645712291818 0.9509648810281796 0.8800590436048549 1.0015909375211227 1.0 17.579655679811882 4.738623068186952 8.49301124590854 0.9867452162098795 0.5923667538157403 0.7832688400870036 0.06272571167117535 0.045156309647260966 50.8475758022286 0.017305529265503595 0.10188084913471805 54780.131215124624 -4.738623068186952 -0.3943784623941392 YSPSQNS(ph)PIHHIPSR ddPTM_BT-474_Trastuzumab_2h_R1 7 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 YSPSQNS(1)PIHHIPSR;YSPSQNS(1)PIHHIPSR;YSPSQNS(1)PIHHIPSR;YS(0.001)PS(0.007)QNS(0.992)PIHHIPSR;YSPSQNS(1)PIHHIPSR;YSPS(0.002)QNS(0.998)PIHHIPSR;Y(0.023)S(0.004)PS(0.013)QNS(0.952)PIHHIPS(0.008)R 248.35 1.4388e-18 15318850000.0 1847999.0 1953801.0 1956973.0 1865214.0 1842786.0 1950859.0 1844008.0 1357973.0 2148338.0 1881654.0 True False 1838049.5787159898 2018832.085187355 2232497.7880857554 2101349.9011553 2077453.8740516426 1816000.7091581211 1754806.2882453615 1459311.8409071711 1618908.8861543308 1761565.2307549608 1.0434184023535988 1.1460444665578102 1.2673375638374544 1.192887929704832 1.1793227056152216 1.0309017670494272 0.9961631040442922 0.8284177136498931 0.9190172795704583 1.0 20.748426468139034 2.39128393385723 1.8678543471116895 0.9028717121421008 1.172306568979033 0.7134946257500863 0.06867051859340148 0.16994583752519665 1.2097532890722669 0.03175221037518616 0.023571507899771776 246.19766738064743 -2.39128393385723 0.26943485683693225 YSPSQNS(ph)PIHHIPSRR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8;Q9NYF8-2;Q9NYF8-4;E9PJA7 E9PK91;Q9NYF8;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 YSPSQNS(1)PIHHIPSRR;YSPSQNS(1)PIHHIPSRR 260.33 4.1346e-27 1522350000.0 774350.0 1042240.0 955030.0 1000790.0 988980.0 866380.0 986160.0 713840.0 1229030.0 959560.0 True False 770180.9856383724 1076930.3283526157 1089489.9227304293 1127489.9113866908 1114920.740856288 806489.1898391488 938455.6733029615 767110.3656060733 926152.0246582511 898320.0592793531 0.8573569939607315 1.1988269851355058 1.2128081873229413 1.2551093563369624 1.2411174940818925 0.8977748871444855 1.0446785236609386 0.8539388135465455 1.0309822374457775 1.0 19.776870023710664 2.735289326878533 24.925685489683318 0.9546660080941459 1.164577866961129 0.3802753829329464 0.11887063164630605 268.69437257324637 2047316.1604615476 0.03768026123957731 0.03689727857315064 543.6123653115735 -2.735289326878533 0.20991185886698316 YSPT(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YSPT(0.941)S(0.059)PK 113.71 0.067845 289720000.0 687810.0 649400.0 549710.0 565450.0 525050.0 701630.0 733800.0 710720.0 1045700.0 650260.0 True False 684106.9073828754 671014.8864294098 627104.3898350253 637035.9120231054 591912.0052848321 653127.969559364 698303.2906117804 763757.5353630346 788001.2466621101 608759.8500844047 1.1237713973548418 1.1022653454172011 1.0301342799596214 1.0464486314837949 0.9723243167281209 1.0728827951922382 1.1470915674135875 1.2546122009477785 1.294436954987839 1.0 19.215513685455946 2.1175314043334956 3.2429605690568066 1.2094268301300422 1.0536115188095692 0.3122522854920462 0.08255259542431577 0.23282190761136398 4.826336905962396 0.03408880839694683 0.023103057082602248 131.07848232973646 -2.1175314043334956 -0.155815311320473 YSPT(ph)SPTYS(ph)PTSPK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 YS(0.002)PT(0.653)S(0.345)PTYS(0.993)PT(0.005)S(0.002)PK;YSPT(0.637)S(0.363)PT(0.005)YS(0.993)PT(0.002)S(0.001)PK 234.28 1.7539e-16 2080420000.0 2279290.0 1868930.0 1664450.0 1629020.0 1793650.0 2308200.0 2062290.0 2131730.0 2875350.0 2174570.0 True False 2267018.555892928 1931136.2052579566 1898790.0923412477 1835253.7649728144 2022060.695703532 2148639.5669183526 1962529.1539871476 2290810.5173056056 2166758.520216025 2035787.080856957 1.113583329617474 0.9485943905514186 0.9327056400917718 0.9014959286411578 0.9932574554173677 1.0554343266653852 0.9640149367491949 1.125270190997232 1.0643345468642702 1.0 20.957155249866087 2.392103859197463 1.3994703998709703 1.063908370841647 0.9706799115137784 0.1629175560805931 0.06663636602328504 0.597309818751523 2.3515269560683545 0.035997725158185716 0.024605665845532608 246.66291478457072 -2.392103859197463 -0.0932284593278686 YSPT(ph)SPTYS(ph)PTTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 Y(0.001)S(0.046)PT(0.47)S(0.47)PT(0.01)Y(0.009)S(0.991)PT(0.003)T(0.001)PK 95.57 0.019713 243920000.0 338230.0 317800.0 292730.0 255170.0 291630.0 392190.0 370360.0 359810.0 521000.0 353460.0 True False 336409.0072608855 328377.78088584304 333943.83954522735 287474.49583683047 328767.3518735653 365078.8284159557 352444.2718874061 386660.8492781591 392606.53104232566 330901.8801876697 1.0166427796363455 0.992372061166908 1.0091929346422341 0.8687605391477088 0.9935493617839408 1.103284237033959 1.0651020528729505 1.1685060509745846 1.1864741621282429 1.0 18.336043963517668 2.740572905014661 3.6144989746326424 1.1182165381431317 0.971017433805818 0.5151137667188419 0.06206617773523274 0.17769678346331597 5.107186102161184 0.020485505132064305 0.02051150368308175 550.2662859592081 -2.740572905014661 -0.14719910433731376 YSPT(ph)SPTYSPTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 YS(0.046)PT(0.753)S(0.187)PT(0.013)Y(0.001)SPT(0.1)S(0.9)PK 156.29 2.9768e-05 327500000.0 678090.0 603250.0 529790.0 480660.0 542050.0 710960.0 678220.0 692310.0 894950.0 639310.0 True False 674439.2387828815 623328.811577674 604379.8269827701 541511.5067168205 611076.8545179375 661813.0086198217 645411.9075479987 743973.6876789483 674401.5642156022 598508.6884591718 1.1268662457001064 1.0414699462131456 1.0098096128540979 0.9047679961186739 1.020999137190676 1.1057700938705226 1.078366814038367 1.2430457602783818 1.1268032982976615 1.0 19.191012665141056 2.499562071518891 2.1724542009882417 1.1439261712475048 1.0154628241676436 0.21420037684025273 0.07759228355855859 0.3590087079440359 3.4167675582017516 0.0314266702542163 0.02640676401431826 315.9090529027632 -2.499562071518891 -0.1284633470798613 YSPTS(ph)PK ddPTM_BT-474_Trastuzumab_2h_R1 5 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YSPT(0.008)S(0.992)PK;YSPT(0.009)S(0.991)PK;YS(0.001)PT(0.254)S(0.745)PK;YS(0.001)PT(0.42)S(0.579)PK;YSPT(0.158)S(0.842)PK 128.12 0.003973900000000001 9984440000.0 11024740.0 9765480.0 8385870.0 8322900.0 8039280.0 10460460.0 11142270.0 10381600.0 14958800.0 8973220.0 True False 10965384.024803763 10090518.098442687 9566527.604711285 9376578.286633844 9063034.65545424 9737353.021474203 10603275.832495127 11156327.708696645 11272404.177650558 8400541.41723985 1.3053187265168724 1.2011747335397471 1.1387989332542974 1.1161873766125288 1.078863159564311 1.1591339817087154 1.2622133867151415 1.328048652412008 1.3418663890540414 1.0 23.00205088231026 2.229833310564327 7.462651683330994 1.2680125475774544 1.1604926262984083 0.04651061502202325 0.10613129690461341 0.23041174653039037 74.10613122309432 0.03796630246497064 0.029283918159854858 169.7591963413084 -2.229833310564327 -0.10751992127904608 YSPTS(ph)PTYS(ph)PTTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 YSPT(0.001)S(0.998)PT(0.011)Y(0.002)S(0.983)PT(0.005)TPK 233.28 2.728e-09 0.0 291150.0 309310.0 254420.0 249530.0 278860.0 356950.0 340010.0 317410.0 426300.0 302470.0 True False 289582.4807498061 319605.1963681563 290240.12454171723 281120.4724151125 314371.1680672854 332274.88666991843 323562.41733566544 341096.74597532174 321244.07712733845 283166.10564240435 1.0226594037194008 1.1286845070778668 1.024981870211 0.9927758542193775 1.1102005565040622 1.1734274690683884 1.1426594175232099 1.204581830870941 1.1344722081004313 1.0 18.11128906278122 3.02936295442155 7.03494173274297 1.1488371728196933 1.0473312509871577 0.30449136703955915 0.060679958548064884 0.184055375867908 31.04080981399254 0.01704783167582066 0.02020668979291317 1069.948697579873 -3.02936295442155 -0.1015059218325356 YSPTS(ph)PTYSPT(ph)SPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 YS(0.002)PT(0.243)S(0.754)PT(0.001)YS(0.001)PT(0.795)S(0.203)PK 191.89 2.316e-06 275620000.0 727030.0 675490.0 557450.0 557050.0 553140.0 723360.0 738850.0 685580.0 991080.0 685120.0 True False 723115.7512606274 697973.2763076728 635934.1145577395 627572.4728843765 623579.1002823584 673355.8258062819 703109.002818906 736741.4609047008 746841.6137916073 641395.0550392583 1.1274108610275568 1.0882111903169436 0.9914858394391821 0.9784491912647568 0.9722231180036 1.0498300860225174 1.0962183092850166 1.1486547255335584 1.1644018891693746 1.0 19.290853705519396 2.221007419347597 3.2937230548879857 1.1206462858597515 1.0283563393989392 0.2127728088210601 0.06155788353496885 0.30378089802780106 6.887655323533611 0.025578854658451815 0.018804370214228944 166.34410678209625 -2.221007419347597 -0.09228994646081223 YSPTS(ph)PTYSPTTPK ddPTM_BT-474_Trastuzumab_2h_R1 3 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YSPT(0.022)S(0.977)PT(0.002)YSPTTPK;YSPT(0.014)S(0.972)PT(0.013)YSPTTPK;YSPTS(1)PTYSPTTPK 323.24 2.1987999999999994e-56 5197200000.0 6264100.0 6946400.0 6509500.0 5931600.0 5739800.0 7448900.0 7402800.0 7141300.0 9121400.0 6826200.0 True False 6230374.781606938 7177606.724812522 7425981.01841171 6682539.951819345 6470729.507540003 6933975.075824506 7044698.282557757 7674220.0687866295 6873553.190498011 6390546.071796149 0.9749362122751752 1.123160156295557 1.1620260514489238 1.0456915382101497 1.0125471962556898 1.0850363956261437 1.1023624903744336 1.2008707835869943 1.0755815095103611 1.0 22.60750778397249 2.213455667471843 3.9486077028905338 1.122035565001955 1.0700672021903053 0.0 0.0691334326256141 0.522867309350285 17.80427947906775 0.027021185221738398 0.020188769465696452 163.47662666224068 -2.213455667471843 -0.05196836281164963 YSPTSPTYS(ph)PTSPK ddPTM_BT-474_Trastuzumab_2h_R1 4 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YSPTSPTYS(0.999)PT(0.001)SPK;YSPTSPTYS(0.999)PT(0.001)SPK;YSPTSPTYS(0.996)PT(0.002)S(0.002)PK;YSPTSPTYS(1)PTSPK 350.79 6.888399999999998e-82 2356040000.0 1424150.0 1218260.0 1125450.0 1070920.0 1146180.0 1341730.0 1340250.0 1350410.0 1834520.0 1387240.0 True False 1416482.5346379385 1258809.0476462774 1283903.5774132344 1206498.3621960988 1292139.229058889 1248979.3631926873 1275416.9872478049 1451184.4514430373 1382427.1273085726 1298705.1555240836 1.0906883125957305 0.9692800881646562 0.9886028187014656 0.929000979987043 0.9949442516361268 0.9617112536129651 0.9820681636803998 1.117408709182664 1.0644657268267357 1.0 20.308642502846347 1.7578707308436616 24.999999693770157 1.0712779281409133 0.9843240542630554 0.32074833084156895 0.04743716088539844 7.80773310613319 10117.925709692436 0.021019784223942094 0.011656738833097634 57.26255617673339 -1.7578707308436616 -0.08695387387785791 YSPTSPTYS(ph)PTTPK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YSPTSPT(0.058)YS(0.899)PT(0.036)T(0.006)PK 131.29 5.9876e-05 219440000.0 281140.0 295180.0 254260.0 263880.0 262080.0 290580.0 294550.0 263410.0 369050.0 286920.0 True False 279626.37347759027 305004.8878599218 290057.5979324618 297287.1809437737 295454.33453013765 270492.8885517439 280301.49120972975 283066.9917688779 278102.5725166413 268608.51995542966 1.0410182578124805 1.1354996777858402 1.0798525600773619 1.1067675031049005 1.0999440173348283 1.0070152971939494 1.0435316469345064 1.0538273015906099 1.0353453142989917 1.0 18.03514554056667 2.7522781030726575 24.659079964041222 1.0343902448133637 1.095075881623097 0.5818712084794428 0.02709761342354786 474.36590565320193 852738.2171868633 0.007857588284224785 0.00829657296316849 565.298851440334 -2.7522781030726575 0.06068563680973327 YSQFINFPIYVWSSK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSQFINFPIYVWSSK 15 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 234.66 2.7135e-17 81389000.0 190140.0 209110.0 189610.0 184490.0 171050.0 208250.0 238870.0 223540.0 289230.0 201140.0 False True 189116.30736654002 216070.0999403357 216305.4398803353 207846.41508381415 192832.2036072195 193854.16766777035 227314.9455279857 240221.6899131198 217953.1419834393 188303.07299538207 1.0043187525207191 1.1474592342188414 1.1487090276303666 1.1037866338427273 1.024052345720075 1.0294795755803965 1.2071759738810017 1.275718373002925 1.1574592942983164 1.0 17.52269701851547 2.2259831091557025 24.988676944479444 1.1938532303859406 1.0817010878647855 0.1528777998498554 0.08192890961991316 285.36891648402053 566959.9134303305 0.03040511920612843 0.022604756589580558 168.26086187633192 -2.2259831091557025 -0.11215214252115513 YSQKEDKYEEEIK ddPTM_BT-474_Trastuzumab_2h_R1 5 YSQKEDKYEEEIK 13 2 P06753-2;P06753-6;P06753-5;P06753-7;A0A494C034;P06753-3;P06753-4;J3KN67;A0A2R2Y2Q3;P06753 P06753-2;P06753-3;J3KN67 TPM3 Tropomyosin alpha-3 chain 0 ;;;; 204.43 4.3855000000000005e-08 10018180000.0 8791850.0 5997810.0 4718250.0 4501770.0 4681426.0 8609460.0 8653530.0 7694600.0 16143080.0 8257610.0 False True 8744515.656466365 6197443.480097294 5382538.588235817 5071693.620423123 5277577.852114181 8014308.2946888935 8234925.694205182 8268810.124387096 12164834.240189517 7730602.260104405 1.1311558093726408 0.801676670403891 0.6962638106494854 0.656054140386551 0.6826865067616227 1.0366990856648544 1.0652372761050528 1.0696204313938436 1.5735946347891951 1.0 22.882149382416042 2.2049966045425635 1.4224828465481851 1.2268828162235712 0.7867750797452703 0.4690315168395347 0.19265164524174497 0.36947370777488364 1.4516697692752134 0.11711713063078041 0.06667088986882684 160.3232856038024 -2.2049966045425635 -0.4401077364783009 YSQKEDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YSQKEDR 7 1 H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6 H7BYY1;P09493-3 TPM1 Tropomyosin alpha-1 chain 0 ;; 83.005 0.020932 361366000.0 1105150.0 975030.0 883160.0 770880.0 780370.0 844480.0 943720.0 912650.0 1150910.0 1011470.0 False True 1099199.9951937087 1007483.2841319185 1007501.2514356689 868473.3289598922 879745.4938846297 786103.0852920943 898068.6582395048 980756.577342796 867283.6519038831 946917.1186369663 1.1608196467880367 1.0639614220747573 1.0639803966010353 0.9171587585300078 0.9290628256367078 0.8301709514172109 0.9484131615787281 1.0357364525783836 0.9159023898018539 1.0 19.852878630052093 4.036097051700599 1.9008725611270463 0.9423076352743032 1.127893340584084 0.6255012290132947 0.056079972726546044 0.25717639481562843 1.7954487728215343 0.016942157251936263 0.05147569843992349 10866.684340622476 -4.036097051700599 0.1855857053097809 YSQKEDRYEEEIK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSQKEDRYEEEIK 13 2 H7BYY1;P09493-2;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P09493-5;A0A494C0V8;H0YL42;P09493-3;Q6ZN40;P09493-9;P09493-4;P09493-10;A0A0S2Z4G6;P09493;P09493-8;P09493-7;P09493-6 H7BYY1;P09493-3 TPM1 Tropomyosin alpha-1 chain 0 117.2 0.00029524 238040000.0 206210.0 172150.0 136280.0 143200.0 136560.0 219570.0 213570.0 200030.0 339680.0 228550.0 False True 205099.78827208458 177879.9086831276 155467.03943300532 161329.10531737327 153950.10654546565 204391.64271218423 203238.8031833711 214957.25433175877 255970.4154788046 213963.7433285005 0.9585726304909191 0.8313553778596355 0.7266045967157873 0.7540020697323621 0.719514924120133 0.9552629783560098 0.949874964896911 1.004643361477056 1.1963261228132978 1.0 17.70700682362528 2.1583101224867653 1.357075130022832 1.075129856793386 0.7972135180033323 0.6351369510375706 0.0865854290195013 0.2825671085292537 0.9950947160720823 0.05710522346360414 0.030771376492808485 143.98263673780534 -2.1583101224867653 -0.27791633879005373 YSQSAPGS(ph)PVSAQPVIMAVPPRPSSLVAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSQSAPGSPVSAQPVIMAVPPRPSSLVAK 29 1 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 YSQS(0.001)APGS(0.995)PVS(0.004)AQPVIMAVPPRPSSLVAK;YSQSAPGS(0.991)PVS(0.009)AQPVIMAVPPRPSSLVAK 217.37 1.5132e-34 1217250000.0 684650.0 630620.0 645240.0 564180.0 509720.0 805130.0 729650.0 722300.0 837510.0 708110.0 True False 680963.9204717665 651609.8054821595 736084.1834733798 635605.1301533215 574629.8206528607 749473.258172157 694354.0419663202 776201.6937650822 631116.8825590365 662917.813556528 1.0272222386338088 0.9829420663570625 1.110370197361747 0.9587992917905239 0.866819097181888 1.1305673838379187 1.0474210041832157 1.1708867643800227 0.9520288483019023 1.0 19.33847049511542 2.6897928412070184 24.999076808943457 1.0778366758068811 0.9939200976053089 0.14113689114925765 0.08150366315252153 631.7415609306787 323839.3436233806 0.026268947190407687 0.024766655136146492 489.5452502157171 -2.6897928412070184 -0.08391657820157228 YSRS(ph)PYSR ddPTM_BT-474_Trastuzumab_2h_R1 3 YSRSPYSR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 Y(0.003)S(0.032)RS(0.946)PY(0.01)S(0.009)R;YS(0.028)RS(0.966)PYS(0.005)R;Y(0.001)S(0.007)RS(0.991)PY(0.001)S(0.001)R 79.82 0.016380000000000002 584470000.0 265373.0 383349.0 331983.0 326221.0 364277.0 305456.0 370688.0 279794.0 294200.0 357649.0 True False 263944.26125371206 396108.53972563543 378723.32075203507 367520.545151807 410665.516711062 284340.54568608163 352756.40527432435 300673.64904514386 221698.35207802732 334823.5346212862 0.7883085684292037 1.183036730598008 1.1311132031994204 1.0976544571978906 1.2265132950572293 0.8492250880981078 1.0535591701262033 0.8980063166265515 0.6621349133321436 1.0 18.35304141238513 2.0077116852210275 1.2845285418786327 0.8390973201130346 1.0807080944775882 0.25207187805945375 0.15110716141612734 0.5665655080772664 1.736090101877732 0.10509819889624375 0.049380371832473624 101.79154008983565 -2.0077116852210275 0.24161077436455358 YSS(ph)SGS(ph)PANSFHFK ddPTM_BT-474_Trastuzumab_2h_R1 2 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 Y(0.08)S(0.108)S(0.492)S(0.49)GS(0.83)PANS(0.001)FHFK;Y(0.109)S(0.1)S(0.619)S(0.242)GS(0.929)PANSFHFK 98.573 0.0013332 526560000.0 542170.0 659630.0 593150.0 576070.0 606500.0 822120.0 797520.0 672750.0 846110.0 757810.0 True False 539251.0169607492 681585.3857952445 676660.3642477775 649000.4029342115 683734.1799928598 765288.7794623164 758940.9107777423 722954.0211552803 637597.5277931327 709445.9170062172 0.7601016568483874 0.960729168294405 0.953787100647797 0.9147989823846207 0.9637580026933441 1.0787133467364924 1.069765703889577 1.0190403578697949 0.898726051569545 1.0 19.436333182343652 5.731122471790763 0.7519258770168011 1.0066822371352566 8.392963336221258e-17 0.5848601267091034 0.05653814998436507 7.767328495536982 1.0948687359184328 0.02128314571793001 9.315856020825324 538421.596925589 -5.731122471790763 -1.0066822371352566 YSS(ph)TETLKDDDLWSSR ddPTM_BT-474_Trastuzumab_2h_R1 6 YSSTETLKDDDLWSSR 16 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 YS(0.056)S(0.93)T(0.011)ET(0.003)LKDDDLWSSR;YS(0.029)S(0.958)T(0.01)ET(0.003)LKDDDLWSSR;YS(0.002)S(0.98)T(0.015)ET(0.003)LKDDDLWSSR;YS(0.006)S(0.972)T(0.021)ET(0.001)LKDDDLWSSR;YS(0.002)S(0.978)T(0.01)ET(0.01)LKDDDLWSSR;YS(0.024)S(0.813)T(0.073)ET(0.09)LKDDDLWSSR 190.55 5.0794e-10 1941906000.0 1788230.0 1518913.0 1400809.0 1382905.0 1370660.0 1878720.0 1587630.0 1614818.0 2382470.0 1777560.0 True False 1778602.3683710322 1569469.1010027009 1598030.7311499026 1557980.6312075579 1545205.426461687 1748848.5084311794 1510830.27156443 1735323.919039656 1795342.1919623965 1664114.598954318 1.0687980079548938 0.943125612856777 0.9602888720248348 0.9362219598256925 0.9285450818306924 1.0509183138770044 0.9078883584783118 1.0427911155458187 1.0788573053145127 1.0 20.66632335716027 1.6108676613622885 9.380491314329218 1.046613816267273 0.9695558599213089 0.2717589191939137 0.052022960655818934 0.11355930042014695 28.177697352730636 0.02513094698808146 0.012559067449534786 40.81949818067104 -1.6108676613622885 -0.07705795634596402 YSSNLGNFNYER ddPTM_BT-474_Trastuzumab_2h_R1 2 YSSNLGNFNYER 12 0 Q9BZZ5-2;Q9BZZ5-5 Q9BZZ5-2 API5 Apoptosis inhibitor 5 0 ; 145.41 0.0006854 84536000.0 96288.0 84830.0 101675.0 103792.0 62729.0 86229.0 101173.0 71196.0 137495.0 86880.0 False True 95769.59610660243 87653.51526918204 115989.95622505729 116932.05655796635 70717.1663260874 80268.19219123242 96278.87547160752 76509.00704596254 103611.19958860752 81335.24401828978 1.177467373000895 1.0776818380168807 1.4260725178248035 1.4376554465327718 0.8694529312555489 0.9868808185192458 1.183728857442874 0.9406624147922643 1.2738782656791263 1.0 16.311593012938246 3.2398192552921117 24.999988869201168 1.0399063720507986 1.2757418316269782 0.3841875761673419 0.1471179306999126 36.97425789015715 734396.6285709041 0.04242813712378715 0.05440138481273399 1737.077741156543 -3.2398192552921117 0.23583545957617957 YSSQDADEQDWEFQKR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSSQDADEQDWEFQKR 16 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 ; 214.5 2.7218e-14 832830000.0 990680.0 653200.0 548770.0 487130.0 527660.0 754610.0 742400.0 541920.0 1135760.0 607650.0 False True 985346.2889548951 674941.3671322621 626032.0460056523 548800.6080534357 594854.3733141506 702445.5868608692 706487.2757565893 582360.8222140014 855867.1664042826 568869.2567646622 1.7321137980963646 1.1864613162097477 1.1004849331568607 0.9647218610030656 1.0456785390324552 1.2348102459533452 1.241915022398299 1.023716460836836 1.5045059233326608 1.0 19.117737590428842 4.737785922302006 4.088303848981954 1.134075776048396 1.7826979842559194 0.5792268215061215 0.150605061612223 0.15337840720204265 5.572365523875946 0.03500550520181828 0.2934523030190004 54674.63876044355 -4.737785922302006 0.6486222082075235 YSSS(ph)GS(ph)PANSFHFK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 Y(0.003)S(0.05)S(0.186)S(0.936)GS(0.807)PANS(0.017)FHFK 99.069 0.0034024000000000003 130030000.0 170110.0 212710.0 189540.0 207050.0 210400.0 271760.0 253880.0 228000.0 272770.0 256030.0 True False 169194.14666099768 219789.92376408985 216225.5844887865 233262.50877068547 237193.1928614962 252973.87085422903 241598.85448421733 245014.5177605409 205549.48843073918 239689.9462016887 0.7058875407257513 0.9169759818759614 0.9021053570050119 0.9731843678349579 0.9895834039776888 1.0554212843010216 1.0079640732236737 1.022214413425467 0.8575640809639057 1.0 17.870809870828285 5.474980767330312 0.8657967395531471 0.9941205591795959 1.6134240891883396e-12 0.7120970862967284 0.05239011600518417 3.6506089678241023 0.8468141581367009 0.0167323918220911 4.6662751162672365 298525.0414598391 -5.474980767330312 -0.9941205591779825 YSSSS(ph)IPEPFGSR ddPTM_BT-474_Trastuzumab_2h_R1 4 YSSSSIPEPFGSR 13 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 YSSS(0.001)S(0.999)IPEPFGSR;YSSS(0.016)S(0.984)IPEPFGSR;YSSS(0.001)S(0.999)IPEPFGSR;YSSS(0.021)S(0.978)IPEPFGSR 215.06 3.1233e-11 486820000.0 1072760.0 1047770.0 920350.0 1002860.0 834310.0 931570.0 1053490.0 985020.0 1278040.0 1083630.0 True False 1066984.3793548404 1082644.3910596594 1049927.280174393 1129821.973174449 940554.4331572017 867172.7585799018 1002528.6639773824 1058527.194230212 963084.1668586044 1014471.8056576818 1.0517634629215888 1.0672000789196714 1.0349496894038621 1.1137046558351473 0.9271370854387033 0.8548022268767873 0.9882272315369507 1.043426922588518 0.9493454243750394 1.0 19.95229733939354 3.2347039655253496 24.999996210197097 0.9652057729593758 1.0646431038449768 0.5173623206851481 0.05020962998262236 96.35045261875256 624574.1064918961 0.016246043219224588 0.02012018739879165 1716.7377832497957 -3.2347039655253496 0.09943733088560103 YSTTWKPLNPNSWLYHAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YSTTWKPLNPNSWLYHAK 18 1 Q9NXF7 Q9NXF7 DCAF16 DDB1- and CUL4-associated factor 16 0 70.96 0.014609 368740000.0 150290.0 136780.0 101310.0 86389.0 83634.0 106300.0 96807.0 81986.0 147190.0 103890.0 False True 149480.8553387888 141332.63961474397 115573.56739769407 97325.83854233634 94284.29416244478 98951.73120328451 92124.07557134713 88104.21163647251 110916.99674495186 97259.65125529606 1.5369256768813382 1.4531477112102846 1.1882992166435593 1.0006805215337091 0.9694081044456834 1.0173975531080912 0.9471972640486999 0.9058660040349978 1.1404214935318526 1.0 16.56955379805227 4.1260414814244495 1.824984740839434 0.9820590476049754 1.5459789822411445 0.9195350394942514 0.058635880622045354 0.0904927132399936 0.5704063495879277 0.016184562102797288 0.05817954398628066 13367.231869087924 -4.1260414814244495 0.5639199346361691 YSVDIPLDK ddPTM_BT-474_Trastuzumab_2h_R1 3 YSVDIPLDK 9 0 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 ;; 181.55 0.00011017 542228000.0 1321970.0 1308450.0 1175280.0 1167860.0 1071660.0 1322410.0 1389880.0 1289880.0 1707660.0 1400570.0 False True 1314852.6604046735 1352000.9672752726 1340749.208283112 1315710.9562566173 1208129.5487735334 1230994.909318299 1322646.1945427933 1386137.3954779243 1286830.0744716637 1311184.4235116951 1.0027976513655905 1.0311295215468317 1.0225481513060035 1.0034522471925031 0.9214032191885305 0.9388419258530942 1.008741539958506 1.0571643245772289 0.9814256876429297 1.0 20.322439190179924 -0.30476721719342814 6.802450329374164 0.9999999848024015 0.9993308608988783 0.0 0.038813265889692014 0.0 0.0 0.04222405570506107 0.009952305372749073 0.4957158243908547 0.30476721719342814 -0.0006691239035231389 YSVEAS(ph)SPGHGS(ph)PLSSLLPSASVPESMTISELR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSVEASSPGHGSPLSSLLPSASVPESMTISELR 33 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 2 Y(0.001)S(0.003)VEAS(0.503)S(0.503)PGHGS(0.978)PLS(0.006)S(0.007)LLPSASVPESMTISELR;YSVEAS(0.5)S(0.5)PGHGS(0.999)PLS(0.001)SLLPSASVPESMTISELR 132.6 2.6803e-08 141834000.0 48386.0 61462.0 64612.0 56699.0 61944.0 66317.0 64023.0 57234.0 66011.0 75218.0 True False 48125.49515218998 63507.72551543642 73708.80798242825 63877.08758652058 69832.20122914693 61732.66188342629 60925.962898389174 61505.09170836318 49743.47355208239 70417.52284263038 0.683430674773113 0.901873893765959 1.0467395757040936 0.9071192085139602 0.991687841465376 0.8766661960175298 0.8652102550461337 0.8734344695114485 0.7064076034490661 1.0 16.103646856317216 -0.40078143146705647 7.8129714652613185 0.9999999993939682 0.8823110396264463 0.11041103958987686 0.10530749818322489 0.0 0.0 0.10082863017023817 0.023765535866641607 0.39739149542085644 0.40078143146705647 -0.11768895976752192 YSVEASS(ph)PGHGS(ph)PLSSLLPSASVPESMTISELR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSVEASSPGHGSPLSSLLPSASVPESMTISELR 33 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 2 Y(0.004)S(0.015)VEAS(0.209)S(0.777)PGHGS(0.991)PLS(0.003)S(0.001)LLPSASVPESMTISELR;YS(0.001)VEAS(0.472)S(0.535)PGHGS(0.991)PLS(0.001)S(0.001)LLPSASVPESMTISELR 116.53 1.6107e-06 142890000.0 40768.0 51091.0 47294.0 49033.0 54416.0 51248.0 52906.0 47229.0 54812.0 51084.0 True False 40548.5096177506 52791.53304983829 53952.584113182755 55240.572772533276 61345.5550510988 47705.34638481579 50346.734659453316 50753.46780400262 41304.31704317072 47823.775384787274 0.8478734539776436 1.1038763172727526 1.1281540129168692 1.1550859865845156 1.2827417860157648 0.9975236375836368 1.052755334650317 1.061260166008292 0.8636774639985786 1.0 15.545440405749387 1.3792403505511228 5.051143769622844 0.9333778184672903 1.0882618515358335 0.2198148598777956 0.11003032553019615 0.3006298707526474 11.155898127964369 0.07864729194911492 0.02792786533171535 23.946406499736984 -1.3792403505511228 0.15488403306854326 YSVLNNDDYFADVS(ph)PLR ddPTM_BT-474_Trastuzumab_2h_R1 5 YSVLNNDDYFADVSPLR 17 0 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR 211.33 2.6927e-12 1327310000.0 920632.0 1005121.0 940981.0 957225.0 928515.0 1006662.0 969429.0 950457.0 1222572.0 1147471.0 True False 915675.4196038302 1038575.8448765237 1073462.9456465254 1078409.5868535098 1046755.8815104209 937073.8253674575 922534.015691589 1021384.9276628529 921285.5122254845 1074238.4183806514 0.852394965527443 0.9668019939578341 0.9992781185993189 1.003882907557101 0.9744167250025756 0.8723145712662547 0.8587795780775114 0.9507991058470318 0.8576173561305561 1.0 20.034882792482225 2.7525465555778186 24.419996654010845 0.9046499420405595 0.9644604007153946 0.16737562150268503 0.05657984804699608 928.7129304231612 1621566.85440815 0.017130084752967012 0.018084896085142493 565.6483903168782 -2.7525465555778186 0.05981045867483514 YSYLTEPGMS(ph)PQS(ph)PCER ddPTM_BT-474_Trastuzumab_2h_R1 3 YSYLTEPGMSPQSPCER 17 0 Q12955-4;Q12955-5;Q12955-6;H0Y3A4;H0YA66 Q12955-4 ANK3 Ankyrin-3 2 YSYLTEPGMS(1)PQS(1)PCER;YSYLT(0.002)EPGMS(0.998)PQS(1)PCER;YSYLTEPGMS(1)PQS(1)PCER 214.28 1.6919e-17 172689000.0 314807.0 386680.0 330246.0 366913.0 384048.0 385302.0 345246.0 281274.0 318558.0 334445.0 True False 313112.11409034574 399550.4100470034 376741.7662503096 413364.1481795625 432954.2363691637 358666.9796433482 328545.13201220275 302264.0941604318 240053.64935850483 313100.43376722955 1.0000373053559066 1.2761094107715099 1.2032617193063149 1.3202286027073111 1.3827966673819363 1.1455333208193332 1.0493282556627033 0.9653902120913257 0.7666985525065404 1.0 18.25626598161476 2.0282209568948417 1.7315015775340425 0.8952946316987098 1.2403835113011534 0.6230504057580393 0.11030813363031276 0.23186060708681971 1.304028000362905 0.06759354598212092 0.03444869096183752 106.71389135948695 -2.0282209568948417 0.3450888796024436 YSYLTEPGMS(ph)PQSPCER ddPTM_BT-474_Trastuzumab_2h_R1 4 YSYLTEPGMSPQSPCER 17 0 Q12955-4;Q12955-5;Q12955-6;H0Y3A4;H0YA66 Q12955-4 ANK3 Ankyrin-3 1 YSYLT(0.002)EPGMS(0.995)PQS(0.003)PCER;YSYLT(0.01)EPGMS(0.81)PQS(0.18)PCER;YSYLTEPGMS(1)PQSPCER;YSYLT(0.029)EPGMS(0.971)PQSPCER 303.96 1.3036e-46 5144550000.0 1787010.0 1918950.0 1927980.0 1842970.0 1706410.0 1998490.0 1912130.0 1649720.0 1923020.0 1893040.0 True False 1777388.936715476 1982821.0907202305 2199422.8256974295 2076289.8130360274 1923711.1988155255 1860339.0902394343 1819632.9668540491 1772830.4835084192 1449117.4881478166 1772224.5664869153 1.002914060851102 1.118831737363161 1.2410519904130153 1.1715726394380488 1.0854782374611263 1.049719728198548 1.0267507861383005 1.0003418962996913 0.8176827674950954 1.0 20.757129995129983 2.1100226569663296 1.0866966180446789 0.9254804014665056 1.1343054182326218 0.5441416815181539 0.07363768501379918 0.3954535402236805 0.8722681675943211 0.05608128846484962 0.028408084074340954 128.83167609009524 -2.1100226569663296 0.2088250167661162 YSYLTEPGMSPQS(ph)PCER ddPTM_BT-474_Trastuzumab_2h_R1 6 YSYLTEPGMSPQSPCER 17 0 Q12955-4;Q12955-5;Q12955-6;H0Y3A4;H0YA66 Q12955-4 ANK3 Ankyrin-3 1 YSYLTEPGMSPQS(1)PCER;YSYLTEPGMS(0.006)PQS(0.994)PCER;YSYLTEPGMSPQS(1)PCER;YSYLTEPGMS(0.001)PQS(0.999)PCER;YSYLTEPGMSPQS(1)PCER;YSYLTEPGMSPQS(1)PCER 392.82 5.435799999999997e-122 2138720000.0 1716880.0 2096640.0 1877180.0 1970560.0 1862730.0 2159420.0 2087200.0 1747920.0 2128760.0 2006480.0 True False 1707636.508843299 2166425.3949543545 2141470.6272589406 2220032.693953931 2099937.6242342955 2010144.3781279048 1986234.162121705 1878358.6661579178 1604155.621922571 1878424.7285660447 0.9090790186449886 1.1533203124983158 1.140035368302301 1.1818587458911187 1.1179248187588275 1.0701223996675195 1.0573935340161116 0.9999648309527008 0.8539898338897797 1.0 20.841091875402224 1.7007589933738103 1.9022176994021502 0.9278037999263856 1.1040147816268142 0.4129394031296396 0.07832379300617245 0.28428346426520185 2.1151161291852834 0.05626676233427738 0.022227379773147947 50.20638977329549 -1.7007589933738103 0.1762109817004286 YSYYDESQGEIYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YSYYDESQGEIYR 13 0 Q9Y316-2;Q9Y316;Q9Y316-3 Q9Y316-2 MEMO1 Protein MEMO1 0 ; 244.95 1.0492e-16 399820000.0 61185.0 69041.0 61094.0 73455.0 68206.0 75540.0 81264.0 68595.0 85418.0 70185.0 False True 60855.58675829255 71338.9879488341 69695.50416143246 82754.39546848924 76891.62981136523 70318.09760203293 77332.94986137324 73713.90721835222 64367.87844255925 65705.73321159845 0.926183816598066 1.0857345997356782 1.060721808506198 1.25946993395519 1.170242322138675 1.0701972897187044 1.1769589361757908 1.1218793797028987 0.9796386905122758 1.0 16.003731639215353 1.2397229818482638 24.906003572199612 0.9898192928840024 1.1158996239909769 0.2427940949169496 0.08340993155729906 38.447136453399054 823974.3812549968 0.0645556114607501 0.020553886080649248 17.36692712268019 -1.2397229818482638 0.12608033110697447 YT(ph)T(ph)T(ph)QQVVKLIGS(ph)HTISKVTVKIGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YTTTQQVVKLIGSHTISKVTVKIGDLK 27 3 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 4 Y(0.526)T(0.548)T(0.548)T(0.548)QQVVKLIGS(0.548)HT(0.548)IS(0.548)KVT(0.185)VKIGDLK 42.45399999999999 0.057472 182010000.0 46810.0 130670.0 121360.0 129790.0 148170.0 108930.0 123750.0 115170.0 66409.0 151790.0 True False 46557.98016107993 135019.27195831694 138446.43311997005 146221.40069233134 167038.57122760438 101399.92549363844 117763.73972909208 123764.57022141019 50043.39178500922 142102.63224604307 0.327636296563932 0.9501532084538612 0.9742707149875838 1.0289844627167557 1.1754783749423168 0.7135682421284774 0.828723140928104 0.8709519891729978 0.35216372134727086 1.0 17.116573753107165 1.4098099075568082 24.999866801156355 0.65457152891954 0.8753200572333478 0.06995954512436131 0.2584884422686435 120.16245374219196 44628.86633464953 0.1645468867560253 0.060318221293208456 25.69270956374852 -1.4098099075568082 0.22074852831380787 YT(ph)T(ph)TQQVVKLIGS(ph)HT(ph)ISKVTVKIGDLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YTTTQQVVKLIGSHTISKVTVKIGDLK 27 3 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 4 Y(0.445)T(0.535)T(0.535)T(0.535)QQVVKLIGS(0.595)HT(0.595)IS(0.595)KVT(0.167)VKIGDLK 57.147 0.040158 488440000.0 350940.0 765510.0 782610.0 887810.0 890150.0 704700.0 819320.0 623940.0 461030.0 856380.0 True False 349050.5780330999 790989.5375894338 892794.6854319358 1000206.6549707894 1003505.3261675906 655985.7476853675 779686.3614936537 670501.5711031224 347415.3339854953 801725.0952161952 0.43537439468446976 0.986609427981213 1.1135920414106315 1.2475681015087488 1.2516825681962502 0.8182178050800227 0.9725108595776231 0.8363235417026746 0.4333347378777141 1.0 19.612748107929242 1.5739906108766188 3.7680225082687073 0.6952826749519514 0.9954588767282231 0.1357758900636109 0.25566774169723333 0.30867147682681073 10.004592738700904 0.16012419561330737 0.06750463934370544 37.49648956959588 -1.5739906108766188 0.3001762017762717 YTCGEAPDYDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YTCGEAPDYDR 11 0 P21266;A0A0A0MTN3 P21266 GSTM3 Glutathione S-transferase Mu 3 0 ;;; 209.6 3.6315e-08 2323580000.0 1440850.0 1607590.0 1632020.0 1550950.0 1480710.0 1768640.0 1782490.0 1525920.0 1753110.0 1622510.0 False True 1433092.6236934834 1661097.6613413221 1861794.2302278648 1747300.1109775116 1669269.6416442303 1646378.0797307347 1696264.1489269454 1639791.898864757 1321079.530970463 1518960.0226993014 0.9434696122856312 1.0935756284022748 1.2257032459085542 1.1503265950820967 1.098955612194334 1.0838850628899386 1.1167273157805442 1.0795490825036518 0.8697263332992856 1.0 20.534652469570734 1.3509561394066936 5.795771493275809 0.9369913273769805 1.1059681041071154 0.4527824140285073 0.0722648318465024 0.17522582410723808 7.708885875001352 0.050931600140337555 0.018159222302519137 22.43655319423275 -1.3509561394066936 0.1689767767301349 YTDHGSDHHYR ddPTM_BT-474_Trastuzumab_2h_R1 2 YTDHGSDHHYR 11 0 J3KPD3;Q9Y580;G3V1T9 J3KPD3 RBM7 RNA-binding protein 7 0 ; 120.09 0.00028832 72338000.0 60507.0 114622.0 127005.0 130170.0 129244.0 122703.0 122397.0 35380.0 102992.0 92918.0 False True 60181.23703495968 118437.12397953773 144886.20005275047 146649.50865336915 145702.45731079506 114220.83042179319 116476.18950805413 38020.23525599975 77611.00162209434 86987.89368889798 0.6918346275884186 1.36153571441923 1.6655903931979201 1.6858611288812666 1.6749739662841228 1.3130658253468077 1.3389931008631797 0.4370750186454068 0.8922046313669922 1.0 16.40852701119695 1.8478406945069576 6.491957593271007 0.7341646196576835 1.4246245579029957 0.4575152731699422 0.3046875527319643 0.19597656782822515 9.908148867883538 0.13818143087025192 0.08378340791109222 70.44346247675922 -1.8478406945069576 0.6904599382453122 YTEFYHVPTHSDASK ddPTM_BT-474_Trastuzumab_2h_R1 4 YTEFYHVPTHSDASK 15 0 Q96HC4;Q96HC4-4;Q96HC4-7;H0YBI4;Q96HC4-3;Q96HC4-2;Q96HC4-6 Q96HC4;Q96HC4-6 PDLIM5 PDZ and LIM domain protein 5 0 ;;; 220.85 9.336e-13 1124290000.0 1471640.0 1516550.0 1440370.0 1290280.0 1270550.0 1709570.0 1742310.0 1185100.0 2170070.0 1626380.0 False True 1463716.8537545744 1567027.4499761665 1643161.5760795265 1453629.3157046123 1432347.0113601428 1591391.4497949115 1658027.8090294516 1273538.1798158633 1635285.3259482137 1522583.03598603 0.9613379494975566 1.0291901413188635 1.0791934083354668 0.9547126700799191 0.9407349073954118 1.0451918957341602 1.088957232441321 0.83643266062735 1.0740204555669421 1.0 20.538089478794763 YTFDFS(ph)EEEDDDADDDDDDNNDLEELK ddPTM_BT-474_Trastuzumab_2h_R1 2 YTFDFSEEEDDDADDDDDDNNDLEELK 27 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 YT(0.002)FDFS(0.998)EEEDDDADDDDDDNNDLEELK;YTFDFS(1)EEEDDDADDDDDDNNDLEELK 381.57 4.0230999999999976e-128 227468000.0 195855.0 218192.0 184087.0 164612.0 173224.0 242120.0 225852.0 229783.0 286101.0 229236.0 True False 194800.53844153607 225454.38882015084 210004.8494871121 185451.8623219513 195283.04962091212 225382.81428917422 214926.67592157485 246930.57427443177 215595.242106987 214605.96222118623 0.9077126116410622 1.0505504436441684 0.9785601821754983 0.8641505594835855 0.9099609703277548 1.0502169276027882 1.0014944305231281 1.1506230848327028 1.0046097502397493 1.0 17.711330632299422 2.7229757284831915 22.03657004633649 1.0555351607089944 0.9458925434757758 0.37561770618232293 0.0625451344672387 174.87662451948435 247268.8889592293 0.021191245346796426 0.020075626999843343 528.415719257632 -2.7229757284831915 -0.10964261723321866 YTGEDFDEDLR ddPTM_BT-474_Trastuzumab_2h_R1 3 YTGEDFDEDLR 11 0 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 ;; 150.81 7.842899999999999e-05 2501950000.0 1612910.0 1862980.0 1607590.0 1643530.0 1676110.0 1851300.0 1755200.0 1537120.0 2025700.0 1800790.0 False True 1604226.2717711478 1924988.163104809 1833924.6985772278 1851600.729485075 1889552.673417693 1723323.9884914435 1670294.2704848691 1651827.6997372047 1526493.3779893268 1685862.0404661167 0.9515762460180919 1.1418420469165895 1.087826082180588 1.098310944217674 1.1208228360698238 1.022221241789731 0.9907656916120234 0.9798119063648281 0.9054675538973955 1.0 20.68505505004134 2.3637726908203605 2.163352882171563 0.9647229859917388 1.0846871045288848 0.4900123302773576 0.05317533104337739 0.2478003404195885 2.3769800296711128 0.021807592408586863 0.01642032158747639 231.08549750395883 -2.3637726908203605 0.11996411853714606 YTGEEDGAGGHS(ph)PAPPQTEECLR ddPTM_BT-474_Trastuzumab_2h_R1 3 YTGEEDGAGGHSPAPPQTEECLR 23 0 O94762-4;O94762;J3KS37;J3KSV9 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 YTGEEDGAGGHS(1)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR 231.4 1.4829e-33 851620000.0 644310.0 889870.0 775330.0 805490.0 828380.0 805740.0 799100.0 665040.0 801010.0 803390.0 True False 640841.1065495712 919488.7850122246 884489.7247108301 907464.9514112491 933869.2828070639 750041.0903079425 760444.4801415559 714668.661804693 603611.8184840948 752116.9623832164 0.8520497989022241 1.2225343011792484 1.1760002352668222 1.2065476472379841 1.241654329730755 0.9972399610976781 1.0110721047055664 0.9502094721280295 0.8025504657831987 1.0 19.520597508585762 2.3309259500574715 1.8401278079676522 0.9245756172085645 1.1475516869241587 0.3881834428976443 0.11703940242107208 0.34222266391671835 2.3584644153271803 0.054648809257417226 0.03814162736142463 214.25252559333478 -2.3309259500574715 0.22297606971559414 YTIENPR ddPTM_BT-474_Trastuzumab_2h_R1 1 YTIENPR 7 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 114.78 0.013557 353380000.0 323570.0 367590.0 362820.0 443540.0 410510.0 402460.0 343870.0 342550.0 390890.0 403630.0 False True 321827.9350720069 379825.0109371527 413901.9023120263 499692.1185228194 462786.01521660143 374638.8874889357 327235.6943890335 368112.82043365453 294560.3971576482 377869.9878349713 0.8516895901575547 1.0051737983039692 1.0953553222988204 1.3223916548277235 1.224722867958267 0.9914491744513811 0.8660007540264046 0.9741785065884141 0.779528426815132 1.0 18.527530412137395 2.497946530101998 6.99687645331193 0.9110752936977535 1.1072079620185256 0.3355340645163374 0.12930687834333054 0.2176088208904948 47.46965955058489 0.04638958373658934 0.041971102650561046 314.7360790364166 -2.497946530101998 0.19613266832077203 YTIHSQLEHLQSK ddPTM_BT-474_Trastuzumab_2h_R1 2 YTIHSQLEHLQSK 13 0 Q9BWJ5 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 0 ; 270.79 2.6038999999999997e-32 2266610000.0 2713700.0 2947700.0 2835100.0 2851400.0 2664000.0 3413500.0 3121900.0 1686780.0 3802500.0 2861200.0 False True 2699089.740720416 3045812.412577725 3234257.43686904 3212386.94763937 3003244.6092349193 3177532.7795146904 2970881.7701838617 1812656.0888952855 2865424.825889521 2678595.7664034404 1.0076510142269406 1.1370929689280245 1.2074451387682468 1.1992802303098735 1.1212011334085643 1.186268125772921 1.109119116608205 0.6767187911034239 1.0697488817944847 1.0 21.353045446208863 1.9250852841290398 10.360092551903087 0.8823614433592238 1.1473814960831474 0.46036740822857025 0.10925819817641999 0.4338676468745376 58.44547614349523 0.04361144801225251 0.027773402534609366 84.15603859689256 -1.9250852841290398 0.2650200527239236 YTQLQYIGEGAYGMVSSAYDHVR ddPTM_BT-474_Trastuzumab_2h_R1 1 YTQLQYIGEGAYGMVSSAYDHVR 23 0 P27361;E9PBK7;E9PQW4;P27361-3;P27361-2;E9PJF0 P27361 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 0 194.21 3.7772e-18 170420000.0 181550.0 197820.0 254660.0 239830.0 226120.0 233160.0 237960.0 216690.0 244340.0 261750.0 False True 180572.55497210132 204404.31911528498 290513.9144555995 270192.45340967627 254915.04168175676 217042.19799960288 226448.96570452323 232860.50812952445 184125.68098825688 245044.8909045507 0.7368958165401519 0.8341505034475665 1.1855538525337375 1.1026243086003413 1.040278949464205 0.8857242328065703 0.9241121692789306 0.9502769360746546 0.7513957149181171 1.0 17.90268654183942 2.724753937611277 23.79459327624314 0.9053548722910818 0.9900466104207749 0.07559359180210978 0.133126010739953 1198.5596596106761 2065607.0790461283 0.0460050260800464 0.04360689400806967 530.5837411353455 -2.724753937611277 0.0846917381296931 YTQVGPDHNR ddPTM_BT-474_Trastuzumab_2h_R1 6 YTQVGPDHNR 10 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;;;; 132.25 0.00022863 11148710000.0 6477500.0 8105240.0 7675720.0 8141580.0 7916260.0 7859550.0 8050190.0 6927320.0 8638250.0 7871740.0 False True 6442625.8597179 8375018.013678944 8756394.657445742 9172303.19322499 8924348.787650904 7316237.807890629 7660771.554987794 7444271.794618206 6509469.034119709 7369358.813864317 0.8742451036034626 1.1364649524084285 1.1882166248944115 1.2446541720792195 1.2110074991681925 0.9927916380087575 1.0395438393602479 1.0101654679390766 0.8833155229018219 1.0 22.81310766947228 2.718901137664603 22.912459733926273 0.9923432199030044 1.140727812245492 0.33595496383770374 0.10174365838778722 338.37871056723424 394367.4861467214 0.034122410856474945 0.0322310818087843 523.4812583028402 -2.718901137664603 0.14838459234248758 YTRPTPVQK ddPTM_BT-474_Trastuzumab_2h_R1 1 YTRPTPVQK 9 1 A0A0D9SFB3;O00571;A0A0D9SG12;A0A0D9SF53;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;O00571-2;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8Y4D2;A0A2R8YFS5;A0A2R8Y4A4;A0A2R8YCW1;A0A2R8YFR4;A0A2R8Y5G6;A0A2R8YDT5;O15523-2;O15523;O15523-3;C9J8G5;C9J081 A0A0D9SFB3;A0A2R8YFS5;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 76.282 0.032716 576710000.0 514550.0 495600.0 571440.0 406860.0 391950.0 564030.0 603640.0 552010.0 936180.0 638420.0 False True 511779.7199718789 512095.7464034733 651893.7849544801 458368.43428370426 441862.5092303396 525039.9336838055 574439.6270712651 593203.7892499832 705470.9831692977 597675.4890211398 0.8562836010057244 0.8568123602361087 1.0907152743073636 0.7669185748848599 0.7393017069413581 0.878469911061109 0.961122946520812 0.9925181810977721 1.1803578967655224 1.0 19.189002852748693 1.7661057024536038 1.8460253168568481 1.0831145854644968 0.8666333168920698 0.43939450497276444 0.09894717087744455 0.3171512759828204 2.1358132874140123 0.07206802168592971 0.029977180716637422 58.35871256148683 -1.7661057024536038 -0.216481268572427 YTVQDESHSEWVSCVR ddPTM_BT-474_Trastuzumab_2h_R1 6 YTVQDESHSEWVSCVR 16 0 P63244;J3KPE3;D6RHH4;H0YAF8;D6R9L0;H0Y8W2;D6R9Z1;D6RFX4;D6RFZ9;H0YAM7;D6RBD0 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed 0 ;;;;; 294.05 1.2904999999999999e-45 9274380000.0 3500207.0 3908238.0 3897140.0 4091767.0 3987722.0 4119856.0 3930141.0 3644624.0 4362575.0 4265832.0 False True 3481362.274421552 4038321.339250234 4445823.437451877 4609784.282661673 4495534.759619927 3835060.0518178567 3740025.065233406 3916604.349905679 3287476.8467600243 3993582.94959748 0.8717390669880651 1.011202569276109 1.1132417915345865 1.1542978675643387 1.125689591616731 0.9603055953061896 0.9365086721462414 0.980724426996174 0.8231898243384114 1.0 21.929252249135853 2.594857447630836 6.111995383100046 0.9398515350874095 1.0611677105394424 0.3135971127533662 0.08537616779262056 0.3055583050549169 14.22365819416541 0.02939038652530576 0.027595621485592022 393.42091818660367 -2.594857447630836 0.12131617545203288 YTWHGRHNLNK ddPTM_BT-474_Trastuzumab_2h_R1 1 YTWHGRHNLNK 11 1 A0AVK6 A0AVK6 E2F8 Transcription factor E2F8 0 56.548 0.076321 118910000.0 60850.0 180090.0 173270.0 206440.0 196270.0 125460.0 132040.0 98957.0 51399.0 131030.0 False True 60522.39036107054 186084.1867832962 197664.9099101616 232575.2828332301 221263.8211165682 116787.24550107308 125652.72075821666 106341.67383346424 38732.40516131377 122667.55321957303 0.4933854859951139 1.5169796894066059 1.6113870760619513 1.8959804506487867 1.8037681139731332 0.9520630552728618 1.0243354290543336 0.8669095538501064 0.3157510209075693 1.0 16.90439416679843 2.59022508044699 5.1816541806491925 0.826808083262759 1.497578759422769 0.3849517292309079 0.40112985318264105 0.2469521465730601 9.645049887233906 0.13638152360714206 0.12760231553756066 389.2468264664196 -2.59022508044699 0.67077067616001 YTYEHDPITK ddPTM_BT-474_Trastuzumab_2h_R1 2 YTYEHDPITK 10 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224;J3KPM9;A0A669KBI6;P42224-2;A0A669KB52;E7EPD2;A0A669KB75 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription 0 ; 119.16 0.00072987 789570000.0 1135400.0 1179660.0 1061000.0 990250.0 988550.0 1293130.0 1264610.0 1116110.0 1529280.0 1315320.0 False True 1129287.132554799 1218924.2699804704 1210379.5776226767 1115615.5484673807 1114435.9829050966 1203738.966800595 1203435.983020665 1199399.7956917423 1152409.4353021255 1231375.1514978935 0.9170942999630044 0.9898886366983471 0.9829494903728755 0.9059916038668653 0.9050336784443413 0.9775566490328469 0.9773105958462437 0.9740328073314983 0.9358719265207593 1.0 20.231838930457357 YVAEIEKEKEENEK ddPTM_BT-474_Trastuzumab_2h_R1 1 YVAEIEKEKEENEK 14 2 O14818;H0Y586;O14818-2 O14818 PSMA7 Proteasome subunit alpha type-7 0 126.71 4.7155e-05 299370000.0 175590.0 121970.0 118920.0 135260.0 129640.0 196040.0 215370.0 184380.0 425160.0 184070.0 False True 174644.64294988292 126029.69771757786 135662.90232883024 152383.90213147973 146148.88556351903 182488.216228522 204951.73030670377 198139.37186266892 320385.0148521208 172322.49500974454 1.0134755937697344 0.7313595227973637 0.7872617113694804 0.8842948921025237 0.8481126364567467 1.0589924212634143 1.1893498309382888 1.1498172183002833 1.859217595671439 1.0 17.39475151796527 2.2033173499369223 1.2065393801802424 1.3712398697492678 0.837065721781504 0.49279512749755516 0.21681993460375212 0.37698020671687865 1.0507764981525634 0.13734738850022485 0.07564290737708945 159.70457225711732 -2.2033173499369223 -0.5341741479677639 YVASYLLAALGGNS(ph)SPSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 YVASYLLAALGGNS(0.5)S(0.5)PS(0.001)AK 129.32 2.0707e-05 20064000.0 80929.0 75598.0 67401.0 66330.0 67415.0 77110.0 81831.0 82496.0 101710.0 79116.0 True False 80493.28725605714 78114.2337300439 76890.47494000584 74727.37119903187 75999.90064998945 71779.56719741547 77872.52190522285 88652.27042619989 76644.93334417455 74066.74914538459 1.0867668445668919 1.0546464456906912 1.0381240681844777 1.0089192797209252 1.0261001262632752 0.9691199900851644 1.0513830133460829 1.1969240104245102 1.0348089288181028 1.0 16.176538396989525 1.9845434873367973 24.918920167613813 1.105381951425522 1.0291384635444676 0.05750678829553124 0.05704257038342487 872.0706243596762 1405948.0541545611 0.022460482153223493 0.015007567274781499 96.50359391945749 -1.9845434873367973 -0.0762434878810545 YVASYLLAALGGNSS(ph)PSAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 YVASYLLAALGGNS(0.006)S(0.993)PS(0.002)AK;YVASYLLAALGGNS(0.331)S(0.669)PSAK 330.54 3.1015999999999985e-75 2811400000.0 1267780.0 1196120.0 1033290.0 968890.0 971130.0 1214270.0 1284720.0 1240420.0 1717430.0 1242950.0 True False 1260954.4133436007 1235932.13113019 1178768.2504823166 1091551.3746574698 1094797.6491615265 1130330.372984123 1222573.185493003 1332986.4391251341 1294192.3888829572 1163623.866856968 1.0836443366785948 1.062140581963596 1.013014844449912 0.9380620368382687 0.9408518339509947 0.9713880964277802 1.0506601147630819 1.1455475236389114 1.112208528670578 1.0 20.15019336200864 2.0036927346022346 6.02863149993125 1.1015071240567949 0.9997534022316956 0.30548230339222693 0.05617741328926044 0.16167568818787925 23.9077569420927 0.02416347459906919 0.016558971291006395 100.85390874293154 -2.0036927346022346 -0.10175372182509923 YVASYLLAALGGNSSPSAK ddPTM_BT-474_Trastuzumab_2h_R1 1 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 172.82 1.7922e-14 0.0 130560.0 125180.0 109890.0 109580.0 122310.0 135690.0 127060.0 122300.0 172380.0 127940.0 False True 129857.07946657973 129346.54062709189 125361.55681899717 123452.81676450961 137885.4535118329 126310.06967990278 120913.62238366416 131426.64702681644 129899.25877365858 119774.7596650552 1.0841773327679327 1.0799148417312943 1.046644194232284 1.0307081150464417 1.1512062633014122 1.054563332317454 1.0095083698919016 1.0972816592940384 1.0845294879899245 1.0 16.869964393059433 -1.6649078027146305 9.747192057391995 0.9999618380345565 1.0704473399838486 0.24664826678718776 0.0371889675759043 3.0265401000143968e-05 1.0404491917284645e-06 0.03533391667807133 0.008323780738432745 0.021631777005111916 1.6649078027146305 0.07048550194929204 YVATLGVEVHPLVFHTNR ddPTM_BT-474_Trastuzumab_2h_R1 3 YVATLGVEVHPLVFHTNR 18 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 ;; 294.05 1.6977999999999997e-49 30526550000.0 5866232.0 6936846.0 6508953.0 6781877.0 6517603.0 6661100.0 6577071.0 4284452.0 7385195.0 6063478.0 False True 5834648.8587116515 7167734.725698034 7425357.00556632 7640461.932838493 7347581.109190441 6200633.835542776 6258912.948878856 4604179.564246431 5565212.648792945 5676501.642835308 1.0278599788790606 1.262702836481147 1.308086824028028 1.345980748985078 1.294385445737396 1.0923336635283123 1.1026003941668279 0.8110945532901719 0.9803947922427138 1.0 22.43657065795656 2.233851573927947 1.8378761459293245 0.9187791933705438 1.2532481554843444 0.6214916647111052 0.10221413587922443 0.206894258373152 1.3995319544577505 0.05250190242551675 0.03326335273845185 171.33716392701103 -2.233851573927947 0.3344689621138006 YVAVMPPHIGDQPLTGAYTVTLDGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YVAVMPPHIGDQPLTGAYTVTLDGR 25 0 P30043;A0A2R8YEP4 P30043 BLVRB Flavin reductase (NADPH) 0 ; 309.36 1.9016999999999995e-74 1612420000.0 1937280.0 2305400.0 2122870.0 2060390.0 2031340.0 2185340.0 2242600.0 1772640.0 2417700.0 2239770.0 False True 1926849.899732042 2382133.8453562725 2421751.643683179 2321235.1627434534 2290019.1083045267 2034272.5895370243 2134116.870436055 1904923.3980835339 1821890.2305202133 2096825.961036427 0.9189364952252077 1.1360665546981412 1.1549607304967486 1.1070232846583532 1.0921359954798573 0.970167590128232 1.0177844561697413 0.9084794987667747 0.8688800426811211 1.0 20.99977569038216 2.396748844475564 1.4059644234750102 0.9251147457092421 1.091038731627862 0.4402867310138949 0.07205997362921897 0.3555572035281655 1.4139332655599903 0.0380791075770513 0.026183773894325354 249.31525024979618 -2.396748844475564 0.1659239859186199 YVCPHPSCGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVCPHPSCGR 10 0 A0A0A6YYC7;Q96JP5-2;Q96JP5;H3BTR0 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 0 65.933 0.067485 79048000.0 78679.0 110350.0 121740.0 130430.0 105140.0 120770.0 132280.0 111620.0 136260.0 112270.0 False True 78255.40100605862 114022.93304201638 138879.9338169509 146942.4246267109 118528.95578639618 112421.45416200043 125881.11104132768 119949.65119487526 102680.5487904555 105104.83248081719 0.7445461750803999 1.0848495768529658 1.321346797658405 1.3980558377611187 1.1277212758797655 1.0696126097010679 1.1976719630308377 1.1412382129695837 0.9769346124898287 1.0 16.68146947709403 -0.5209843779949874 7.624661840693495 1.000015611927127 1.1343644655304483 0.03349911589988164 0.1708747311350524 0.0 0.0 0.16750479301526713 0.03948125834078149 0.30131144069626636 0.5209843779949874 0.13434885360332127 YVDEASKK ddPTM_BT-474_Trastuzumab_2h_R1 4 YVDEASKK 8 1 P62249;M0R210 P62249 RPS16 40S ribosomal protein S16 0 ;;; 122.13 0.0022503 5229230000.0 6856500.0 6801100.0 5673900.0 5916800.0 6148800.0 7605900.0 8616800.0 8306700.0 12632800.0 8933300.0 False True 6819585.365828766 7027470.502148233 6472735.801577102 6665866.273336822 6931813.233207072 7080122.035362755 8199972.464627398 8926588.134567924 9519615.710847378 8363169.145817081 0.8154307591924822 0.8402879793078308 0.77395729880873 0.7970502756925368 0.8288500581952338 0.846583623016156 0.980486263240137 1.067369077311158 1.1382785096016745 1.0 22.995618311219456 2.118707267614946 1.9136442299515477 1.078691101059147 0.8095489697289336 0.9128371989989706 0.0356250321632657 0.08481953752592343 0.6017823636193582 0.018741293325072537 0.01072849123778395 131.4338615140767 -2.118707267614946 -0.26914213133021325 YVDEENS(ph)DGETSNHR ddPTM_BT-474_Trastuzumab_2h_R1 5 YVDEENSDGETSNHR 15 0 A0A494C108;Q8N9T8;H0YFD2;H0YH26;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 1 YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR;YVDEENS(0.958)DGET(0.039)S(0.003)NHR;YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR 248.7 1.2878e-18 10694980000.0 2652710.0 3482275.0 3430818.0 3661875.0 3583255.0 3277409.0 3385099.0 3088119.0 3144362.0 3265314.0 True False 2638428.10410379 3598180.418295309 3913847.353195358 4125467.9995394927 4039561.284633654 3050849.4300209363 3221348.829036038 3318570.120930546 2369476.117392147 3056918.864944034 0.8631004683704926 1.1770611446572314 1.280324250040903 1.3495510289295891 1.3214486426049161 0.9980145253468451 1.0537894433436377 1.0855931307131053 0.7751190731833596 1.0 21.543646830840437 2.7175609605040973 23.644669482230494 1.0017897040629666 1.210077384050641 0.341664481376623 0.14812095031125114 510.535440365599 574838.613551508 0.04985654623258129 0.04706164043325822 521.8683520615635 -2.7175609605040973 0.20828767998767428 YVEAAWYPWWEQQGFFKPEYGRPNVSAANPR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVEAAWYPWWEQQGFFKPEYGRPNVSAANPR 31 2 P26640;A0A140T936;P26640-2;A0A140T954 P26640 VARS Valine--tRNA ligase 0 125.52 3.658e-06 283060000.0 156030.0 181410.0 182180.0 169400.0 180500.0 177140.0 207160.0 167900.0 207820.0 212390.0 False True 155189.95181656285 187448.12218533925 207829.3604630532 190846.02263102648 203485.6050926813 164894.72874270726 197138.8793719494 180429.55057892474 156605.54564532818 198835.08836377284 0.7804958022934044 0.942731606015127 1.045234833415444 0.959820644341555 1.0233888131475077 0.829303972953853 0.9914692672918968 0.9074331500727135 0.7876152390106074 1.0 17.601212845731066 2.744712428327001 24.991429871575843 0.9057362040302047 0.9557112269926367 0.06342737002615184 0.08917044824647787 1523.5965170866593 6189529.893035418 0.027424954989331406 0.028435229210891012 555.5362825238803 -2.744712428327001 0.04997502296243195 YVELFLNSTAGASGGAYEHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YVELFLNSTAGASGGAYEHR 20 0 P31943;G8JLB6;H0YB39 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed 0 ; 163.53 1.9481e-11 1126930000.0 649090.0 695100.0 641720.0 711670.0 685440.0 696680.0 700110.0 632060.0 766200.0 741390.0 False True 645595.3715606787 718235.9833031776 732068.5980697694 801767.3490308304 772726.721078822 648520.1514083184 666243.004620078 679227.5267356468 577380.2765539917 694073.8554640878 0.9301537098368382 1.0348120414691806 1.0547416421272298 1.155161432344594 1.1133205998115914 0.9343676415742382 0.9599021766561127 0.9786098718291094 0.8318715249228489 1.0 19.404729660644687 2.72546678914795 24.616794475169648 0.9444795244721784 1.0616268549078254 0.4203702916307459 0.06836714589517771 661.1517778642386 1242983.4272286159 0.022936772265665557 0.021746527749548935 531.4553571295337 -2.72546678914795 0.11714733043564696 YVESFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YVESFR 6 0 P50135;P50135-3;P50135-2 P50135 HNMT Histamine N-methyltransferase 0 ; 119.22 0.049314 260190000.0 178374.0 221080.0 194525.0 198670.0 176377.0 208871.0 205449.0 160411.0 228630.0 198438.0 False True 177413.65420321442 228438.51415431805 221912.42915838936 223821.60162990572 198837.56548161653 194432.23939944684 195510.6469786041 172381.6833705534 172287.19998504213 185773.51694868083 0.9549997067247439 1.2296613527396547 1.1945320991026496 1.2048089808825415 1.070322448255876 1.046609024757592 1.0524139833807051 0.9279131180908479 0.927404523609443 1.0 17.50318532658803 2.3926351478993784 1.1810345039974324 0.9484945690366782 1.1503378449974573 0.48538742431375115 0.07787392262549475 0.3706006183911968 1.0286609692555517 0.046225296462301474 0.030438638336607694 246.96485141208163 -2.3926351478993784 0.2018432759607791 YVGFGNT(ph)PPPQK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVGFGNTPPPQK 12 0 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;F8W1U7;E5RHT6;E5RHC5;Q8N6T3-3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 YVGFGNT(1)PPPQK;YVGFGNT(1)PPPQK 141.82 0.00068007 370350000.0 2218340.0 2072140.0 1806290.0 1802850.0 1709570.0 2296390.0 2193810.0 2057980.0 2512700.0 2406350.0 True False 2206396.703920744 2141109.9272649162 2060599.9314458673 2031090.6251496233 1927273.6060847382 2137645.964420605 2087687.0291319531 2211556.917810694 1893478.7534549923 2252774.682820114 0.9794129527231227 0.9504323462054309 0.9146941978530785 0.9015951043124395 0.8555110374696238 0.9488947033729151 0.9267180801759112 0.9817035563637363 0.8405096026224245 1.0 21.103271595177333 YVGFGNT(ph)PPPQKK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVGFGNTPPPQKK 13 1 Q8N6T3;F8VWH9;Q8N6T3-5;Q8N6T3-2;Q8N6T3-4;F8W1U7;E5RHT6;E5RHC5;Q8N6T3-3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 YVGFGNT(1)PPPQKK;YVGFGNT(1)PPPQKK 89.46600000000002 0.0043578 1308990000.0 2654500.0 2482200.0 2410840.0 2336160.0 2255870.0 2831900.0 2913700.0 2798000.0 3874700.0 3485800.0 True False 2640208.466942673 2564818.526478416 2750265.3166030687 2631917.6164681185 2543141.6729109515 2636137.418575553 2772753.199585099 3006800.967956114 2919832.1033199606 3263333.2596564717 0.8090526639073956 0.785950536583693 0.8427779505708795 0.8065120559415921 0.7793079868216297 0.8078051516114714 0.8496690282490438 0.9213894900432686 0.8947391734141578 1.0 21.637914895860003 1.4663830269060818 0.8526025510346158 0.9887572038122855 0.8013321507166276 0.8718695273374195 0.023770226153202578 0.17867458675010417 0.2679247898504528 0.022599612009976514 0.00890963308488752 29.267324776052963 -1.4663830269060818 -0.18742505309565793 YVHADAPTNK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVHADAPTNK 10 0 Q92922;F8WE13 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 ; 101.97 0.0030085 485450000.0 1028680.0 1019010.0 946870.0 917630.0 921030.0 1111600.0 1112820.0 988910.0 1329170.0 1115580.0 False True 1023141.7011770932 1052927.131845447 1080181.0656584199 1033801.8639132767 1038317.7111274921 1034757.7084249381 1058988.6452147737 1062707.4857832314 1001613.8634655037 1044382.7293039111 0.9796616436380797 1.008181294368235 1.0342770282867169 0.9898687855574875 0.9941927245575372 0.9907840099142695 1.0139852139460384 1.0175460163837964 0.9590486661274903 1.0 19.994219074797623 1.2494209056433614 24.99976969058192 0.9795243242490893 1.0046903380995238 0.22621817851076853 0.017684540703165667 260.1232192089001 598797.9222210505 0.012004133564171453 0.0042900586549858444 17.759098075006566 -1.2494209056433614 0.025166013850434488 YVHPLTEEAIEEMER ddPTM_BT-474_Trastuzumab_2h_R1 1 YVHPLTEEAIEEMER 15 0 P22830;P22830-2;K7ELX4;A0A499FJN5 P22830 FECH Ferrochelatase, mitochondrial 0 88.76799999999999 0.006658 219550000.0 381420.0 281460.0 254210.0 208960.0 260690.0 382320.0 311420.0 302090.0 495340.0 335980.0 False True 379366.47709974565 290828.2259538369 290000.55836706946 235414.31457484825 293887.3262693133 355891.11828447506 296355.4248600716 324633.489781938 373270.0942159412 314537.46875305026 1.206109016530536 0.9246218808423491 0.9219905008988127 0.7484460134689924 0.9343475911928641 1.131474478049839 0.9421943466224887 1.0320979915967161 1.1867269603705088 1.0 18.26287236042666 2.7758355255996636 21.67625664499319 1.0483898439012564 0.9334222319211559 0.16589154282587426 0.12194587881756297 216.22824724248338 125740.5482245155 0.03785517921059657 0.040148769453369135 596.8092223975017 -2.7758355255996636 -0.11496761198010053 YVIS(ph)DEEEEDDD ddPTM_BT-474_Trastuzumab_2h_R1 2 YVISDEEEEDDD 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD 211.64 3.0971e-08 402240000.0 846540.0 940650.0 702650.0 975400.0 929690.0 884480.0 891580.0 838310.0 1027220.0 917340.0 True False 841982.3226994355 971958.9666150663 801577.0124567142 1098885.5399899855 1048080.5107956501 823337.9794419658 848450.8692336482 900868.9490519254 774075.3950427966 858794.5758257143 0.9804234288390631 1.1317711988114814 0.9333745636271789 1.2795673970500203 1.22040886179089 0.9587135301248757 0.9879555520222972 1.0489923602344104 0.9013510527806236 1.0 19.711953553553787 2.7106529129765193 24.7938474623456 0.988636196591663 1.1100749952266782 0.2904593514840743 0.10084199249412434 950.3770128854062 844335.9108451458 0.033355933269051986 0.031454580078168315 513.6329933497432 -2.7106529129765193 0.12143879863501517 YVIYIER ddPTM_BT-474_Trastuzumab_2h_R1 4 YVIYIER 7 0 P61254;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KS10;Q9UNX3 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 0 ;;; 166.34 0.0026222 1885620000.0 2392470.0 2351700.0 1657120.0 1993880.0 1645560.0 2154620.0 1395880.0 1616110.0 2578350.0 2219370.0 False True 2379589.2073484063 2429974.9128673305 1890428.0920547533 2246305.0035628756 1855112.31200173 2005676.190829923 1328355.9516205655 1736712.3346402976 1942950.1906199204 2077727.906501746 1.1452843271258275 1.1695347139841135 0.90985354056184 1.081135309649357 0.892856233097994 0.9653218713353395 0.639331044004269 0.8358709190003547 0.9351321626570681 1.0 20.986575304585084 3.792205676610701 0.7606608267290642 0.8413050259234953 1.188149017682922 0.435126823411522 0.1115658307848291 0.8395616968879559 0.8182464248483392 0.05021664231273247 0.20190571783530592 6197.34504350116 -3.792205676610701 0.3468439917594266 YVLHCQGTEEEK ddPTM_BT-474_Trastuzumab_2h_R1 4 YVLHCQGTEEEK 12 0 B7Z7P8;P62495-2;P62495 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 ;;; 206.69 8.7186e-08 2745290000.0 1960150.0 1653250.0 1443590.0 1385350.0 1369010.0 2097300.0 1671920.0 1745710.0 2761850.0 1939690.0 False True 1949596.770193139 1708277.426839269 1646834.924090784 1560735.1679568642 1543345.3087420012 1952318.5875131562 1591042.8422453627 1875983.7447357653 2081229.074393947 1815897.323547844 1.0736272061815022 0.9407345914810257 0.9068987011188765 0.8594842603256598 0.849907805209306 1.075126089011892 0.8761744519435891 1.033089107191659 1.1461160537026982 1.0 20.79225119981856 1.5609674408824987 5.35109905851312 1.0780334957596702 0.937901248554154 0.31539756278204134 0.08173780660702358 0.1586483752262539 9.611023370927825 0.04572349051633192 0.020743890741784215 36.38877543891809 -1.5609674408824987 -0.1401322472055162 YVLINWVGEDVPDAR ddPTM_BT-474_Trastuzumab_2h_R1 2 YVLINWVGEDVPDAR 15 0 Q16643;Q16643-3;Q16643-2;D6R9W4;D6RFI1;D6RCR4 Q16643 DBN1 Drebrin 0 ; 220.9 3.7408e-12 392390000.0 287300.0 344880.0 350780.0 332390.0 313460.0 365530.0 339320.0 328860.0 414370.0 360560.0 False True 285753.2087220306 356359.1223156372 400166.774965582 374470.5399192855 353377.2729770184 340261.7714650661 322905.79527172114 353401.2031172437 312254.0657735284 337548.7521090532 0.8465538886949024 1.0557263805274175 1.1855080857662261 1.1093820894894135 1.0468925474292714 1.0080374148595177 0.9566197275331615 1.0469634413077877 0.9250636058421785 1.0 18.364736359849243 2.718039986573076 3.504702125119549 0.9910038260567613 1.061043908246085 0.1097195721830001 0.08530010119107012 0.5429459212128706 14.265436198674847 0.029409815340164017 0.028950291687578338 522.4442895298185 -2.718039986573076 0.07004008218932367 YVLNFLEVHDK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVLNFLEVHDK 11 0 Q08AF3;B4E128;Q08AF3-2 Q08AF3 SLFN5 Schlafen family member 5 0 ; 160.15 2.782e-05 962140000.0 1019290.0 1041810.0 1009670.0 968560.0 970450.0 1130620.0 1026630.0 1008660.0 1526290.0 1117600.0 False True 1013802.2558937656 1076486.0160625554 1151822.759791037 1091179.596691307 1094031.0551922026 1052462.9005932023 976967.984792548 1083931.3310716986 1150156.2807381793 1046273.811174501 0.9689645722430114 1.0288760022141237 1.1008808091048858 1.0429197262104808 1.0456450725494997 1.005915363026963 0.9337593795794685 1.035992031430974 1.0992880338341495 1.0 19.99682902543071 2.740049315636059 24.66561206263401 1.0119713090355418 1.040807505439868 0.047161571581965545 0.04841356375285931 345.9285668918139 5731615.3970014835 0.0158608906590691 0.016057371856071943 549.6032796620404 -2.740049315636059 0.02883619640432622 YVLQGFFRPSETVGDLR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVLQGFFRPSETVGDLR 17 1 Q9BZE9;Q9BZE9-2;J3KRY8;Q9BZE9-3;J3KRF7 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 0 82.59 0.005228 0.0 188960.0 244580.0 202910.0 218610.0 217730.0 196220.0 239190.0 191840.0 243660.0 215260.0 False True 187942.6603554295 252720.69744826775 231477.96427466287 246286.00358541147 245456.62491318275 182655.77325219644 227619.46590546693 206156.07494378163 183613.25787672345 201521.92250664197 0.932616451935819 1.2540605721937688 1.148649047187576 1.2221300815413474 1.218014506114553 0.9063816530738797 1.1295022550113119 1.0229957732612784 0.9111329208893972 1.0 17.620577264908466 2.749854265727381 24.93262861533369 1.0089878102060499 1.1639584283521138 0.3806747633044084 0.10152942286474911 768.342157106383 1696242.9519667414 0.03007029159650224 0.03165134338545374 562.1526544640559 -2.749854265727381 0.15497061814606394 YVQHTYR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVQHTYR 7 0 P52566;F5H3P3;H0YGX7 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 0 65.038 0.07167000000000001 51032000.0 55631.0 84298.0 95365.0 78532.0 65411.0 53333.0 64977.0 56608.0 74608.0 53801.0 False True 55331.488877185155 87103.80797078287 108791.56307256056 88474.14314793255 73740.70312862808 49646.21524237789 61833.81427375528 60832.37640959955 56221.85809598048 50367.37411864649 1.0985581409673073 1.7293696464222899 2.1599609861790445 1.7565764484668374 1.4640569300857906 0.9856820235541797 1.2276561038917413 1.2077734341739053 1.116235640228991 1.0 15.620201898221609 2.9825451648701637 3.7608714203249276 1.139226999937198 1.718628889892001 0.5364232957957732 0.2529775709988543 0.18356015340031762 5.665308820053234 0.08093196616194104 0.09179009134201342 960.6057123024848 -2.9825451648701637 0.579401889954803 YVSERPR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVSERPR 7 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 114.78 0.0053147 86436000.0 17378.0 24724.0 22759.0 31352.0 25557.0 19284.0 18210.0 22333.0 24298.0 22761.0 False True 17284.438778877306 25546.923394026373 25963.26937522575 35321.15998540701 28811.53246179309 17950.94246965322 17329.112731044585 23999.601864676155 18310.083476519034 21308.373493327512 0.8111571155015534 1.1989147553672324 1.218453833811195 1.6576187758520118 1.3521225573981568 0.8424360721513711 0.8132536599506767 1.1262990989054782 0.8592905264333123 1.0 14.379132853352074 2.7400348637218146 24.995466252383324 0.9421925690616585 1.2660993649487506 0.3618157326156003 0.21098105496802821 158.68997261504794 2690564.7683527186 0.0701104371939107 0.07080307127098763 549.5849909486377 -2.7400348637218146 0.32390679588709215 YVSGS(ph)SPDLVTR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVSGSSPDLVTR 12 0 Q15678 Q15678 PTPN14 Tyrosine-protein phosphatase non-receptor type 14 1 YVS(0.003)GS(0.829)S(0.167)PDLVTR 116.9 0.00083027 63908000.0 96024.0 81917.0 78490.0 86874.0 84796.0 99404.0 90266.0 84827.0 117820.0 108060.0 True False 95507.01745326944 84643.55782512779 89540.70975268984 97872.23949260815 95594.26797473115 92532.43545184653 85899.48873039382 91157.22148277811 88784.83970711472 101163.5182851794 0.9440855663405823 0.8367004159198781 0.8851086960051654 0.9674657539757252 0.9449480365565326 0.9146818637821403 0.8491152758076645 0.9010878924337765 0.8776369309026081 1.0 16.626329591761316 4.239131574670068 0.006176851581922004 1.7922733737977639 4.7180501296839514e-05 0.10514808237643425 0.046909031270131074 44546.3890678579 50.45028656455229 7042.960821824304 7601.491141095542 17343.293538397127 -4.239131574670068 -1.792226193296467 YVSHGATGK ddPTM_BT-474_Trastuzumab_2h_R1 4 YVSHGATGK 9 0 P00966;Q5T6L5;Q5T6L6 P00966 ASS1 Argininosuccinate synthase 0 ;;; 141.2 0.00010729 667090000.0 1153640.0 1305590.0 1165140.0 1176440.0 1249990.0 1051560.0 1147660.0 1240520.0 1786110.0 1348220.0 False True 1147428.9304214548 1349045.7739041776 1329181.584421571 1325377.1833768894 1409168.8172288109 978868.1323059807 1092143.3013130494 1333093.9016329227 1345947.1231478062 1262175.4453307854 0.9090883004151152 1.0688258743225874 1.0530878170215274 1.050073655195804 1.1164603323902424 0.7755404654140163 0.8652864428263579 1.0561874789788446 1.0663708663695848 1.0 20.26748103155916 4.773017307465105 22.229078535383316 1.002619383569155 0.9090875676206124 0.07717721466796268 0.09975362662702396 10924.513350120471 7047177.056559381 0.02528556348539264 3.5736466815350227 59294.89542581936 -4.773017307465105 -0.09353181594854265 YVSSLTEEISKR ddPTM_BT-474_Trastuzumab_2h_R1 1 YVSSLTEEISKR 12 1 P49257 P49257 LMAN1 Protein ERGIC-53 0 140.0 9.5092e-05 302740000.0 97094.0 114450.0 112370.0 104370.0 97523.0 133060.0 127090.0 93828.0 160210.0 118980.0 False True 96571.25669215753 118259.39906351405 128190.71926245077 117583.23129870277 109941.9759858922 123861.87538954872 120942.17116905306 100829.92180893007 120728.39220401335 111386.59453609715 0.8669917335596574 1.0617022591995091 1.1508630800352542 1.0556318001139489 0.9870305887685902 1.111999840783432 1.0857874924065412 0.9052249261131152 1.0838682402206739 1.0 16.76521608808389 -1.648973924269258 6.226021860384473 0.9997850262689487 1.032951972399875 0.014131615312371948 0.08534774723612529 0.00025619708661982297 1.4444495481831802e-05 0.08313079494870301 0.019467278348650228 0.022440166540634333 1.648973924269258 0.0331669461309263 YVSVRDFK ddPTM_BT-474_Trastuzumab_2h_R1 1 YVSVRDFK 8 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 87.639 0.013845 650320000.0 652120.0 287210.0 736650.0 754930.0 645130.0 899890.0 868850.0 693920.0 385490.0 688370.0 False True 648609.0583773429 296769.6112278885 840363.9169234178 850504.0605952839 727283.4815149105 837682.7224132033 826820.406170679 745703.8340543627 290491.15480135503 644437.6372567926 1.00647296321535 0.4605094334514064 1.304026748811 1.3197616207142457 1.1285552541759845 1.2998662306239686 1.2830107342740618 1.157138861765794 0.45076689815620036 1.0 19.297681229030758 4.228580040020679 24.992763598317588 1.1464975202124272 0.7334911454437838 0.23412456065067888 0.27422071197177167 226.95607875433606 568334.4321085254 0.06659373591705225 0.14657855629628028 16927.00178570861 -4.228580040020679 -0.41300637476864344 YVSVRDFKGK ddPTM_BT-474_Trastuzumab_2h_R1 1 YVSVRDFKGK 10 2 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 118.28 0.00047591 409900000.0 1463700.0 638090.0 1089300.0 879970.0 1038700.0 1238200.0 1305700.0 1192800.0 1085900.0 1254800.0 False True 1455819.6018323577 659328.4399164498 1242663.971634667 991374.111774643 1170972.2881427577 1152606.1484092816 1242538.3027416212 1281812.7929156732 818294.495314512 1174717.5897116717 1.2392932689376694 0.5612654868633392 1.0578406099628357 0.8439254851184875 0.9968117430080934 0.9811772280452383 1.0577336320013695 1.0911667656481483 0.6965882714971163 1.0 20.16388253386485 3.2068469644593276 24.699795239024407 0.9893694768338691 0.9090057210397308 0.0045741968704363645 0.189048431824015 636.2738747646173 495552.3432306519 0.051321371273111635 0.06134627700068254 1610.0781801150956 -3.2068469644593276 -0.08036375579413835 YVTAFNGELEDYMSDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YVTAFNGELEDYMSDR 16 0 F5H8D7 F5H8D7 XRCC1 0 ;; 191.19 1.7118e-09 200551000.0 259526.0 240024.0 223902.0 193682.0 218670.0 286994.0 281749.0 224149.0 341421.0 265139.0 False True 258128.74085204912 248013.05374242784 255425.455408928 218202.12134133693 246516.32834136637 267154.7802912079 268119.7244842985 240876.1365855594 257282.36935700895 248217.60202308168 1.039929234462775 0.9991759316060317 1.0290384458116555 0.8790759380595675 0.9931460393306148 1.0762926485220223 1.0801801415330978 0.9704232682223737 1.0365194380255287 1.0 17.921245900344182 2.975590502579366 24.707848731324827 1.0303006832026715 0.983880945458857 0.16218203969083433 0.050541039851427216 1258.3949371103831 1273776.8785861284 0.01607448317507251 0.017128541321593305 945.3453723339792 -2.975590502579366 -0.04641973774381458 YVVLCRGAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVVLCRGAK 9 1 O75426-2;O75426-4;O75426;O75426-3 O75426-2 FBXO24 F-box only protein 24 0 ; 71.501 0.029683 540180000.0 1017780.0 1164190.0 1064670.0 898470.0 849910.0 1097040.0 1243920.0 1010310.0 1805640.0 1204200.0 False True 1012300.385565988 1202939.3603822824 1214566.2817224655 1012216.2098777962 958141.0006887568 1021204.2069543861 1183746.8373641383 1085704.462450229 1360664.2163363998 1127346.9250325102 0.8979493029945467 1.0670533920581655 1.0773669176304712 0.8978746359277169 0.8499078494946231 0.9058473343730785 1.0500288873631352 0.9630615370853296 1.2069613941574917 1.0 20.10450012210502 1.270871204534677 24.925612854669147 1.1034807240475384 0.9670297963493484 0.28697585990512675 0.0880428948036407 209.52602672546718 161636.48919167023 0.059970887515256664 0.021896301077155057 18.658262746383894 -1.270871204534677 -0.13645092769819 YVWLVYEQDRPLK ddPTM_BT-474_Trastuzumab_2h_R1 2 YVWLVYEQDRPLK 13 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ; 210.41 2.7503e-08 17306600000.0 8194900.0 7748900.0 7177300.0 6539500.0 6228700.0 7645000.0 7808900.0 6793000.0 9255100.0 7848100.0 False True 8150779.568938981 8006817.452191032 8187801.453790053 7367400.029489958 7021888.024602673 7116519.144394262 7431153.674105112 7299928.154155073 6974304.616986233 7347227.538903551 1.1093680610516856 1.0897739875068457 1.11440695288606 1.0027455921950958 0.9557194176200198 0.9685992582524919 1.011422830551684 0.9935622812145087 0.9492430416857661 1.0 22.808768523975065 3.6698786090223314 4.459650199837714 0.982048905153609 1.103320385504406 0.8927401068897172 0.019379886020403025 0.06538654752714987 2.5397217544821764 0.005382701419827301 0.008681001819071743 4676.044214784415 -3.6698786090223314 0.12127148035079705 YVWLVYEQDRPLKCDEPILSNR ddPTM_BT-474_Trastuzumab_2h_R1 2 YVWLVYEQDRPLKCDEPILSNR 22 2 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 ; 155.87 8.966200000000002e-09 1939070000.0 427453.0 521905.0 396050.0 434995.0 443987.0 451880.0 456840.0 474054.0 700610.0 534938.0 False True 425151.640542493 539276.2924267654 451810.3974716886 490065.32239895745 500526.1127328771 420642.59921110165 434740.9039017244 509430.316677436 527954.0531930198 500797.7988565373 0.8489487004799825 1.0768343903629076 0.9021812765617165 0.9785692419533689 0.9994574933750097 0.8399449841264227 0.8680966747345147 1.0172375314759952 1.0542259858140108 1.0 18.93386869568151 1.5979889562838299 7.72812850393342 1.0294521592080679 0.9361135800335706 0.2666152956704714 0.07052551089686325 0.1584635339764296 21.43216095768205 0.03707982244678118 0.017853707991307304 39.6267957391298 -1.5979889562838299 -0.09333857917449728 YWCDAEYDAYR ddPTM_BT-474_Trastuzumab_2h_R1 3 YWCDAEYDAYR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 ;; 172.59 3.0648e-05 1061050000.0 695946.0 790786.0 770374.0 715302.0 685461.0 770593.0 738922.0 574186.0 857740.0 727189.0 False True 692199.1040628703 817106.8339697691 878835.9629891551 805859.1598584332 772750.3953043444 717323.7196908048 703177.5199038391 617034.6749774293 646361.4701271474 680779.1754421755 1.016774791345927 1.2002523923253776 1.2909266245083642 1.183730626506042 1.1350969935330826 1.0536804672747124 1.032901042319803 0.9063653784307618 0.9494436572730456 1.0 19.376827381105514 2.4568555740530638 1.4099188812974779 0.9465949830164666 1.1814463633763428 0.6440281307260523 0.06884692660662034 0.24657069037951987 0.9910187518642177 0.03614077842782996 0.026419798322605523 286.3225637196534 -2.4568555740530638 0.23485138035987618 YWCDAEYDAYRR ddPTM_BT-474_Trastuzumab_2h_R1 2 YWCDAEYDAYRR 12 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 ; 173.72 5.18e-05 879410000.0 473370.0 675750.0 597780.0 689580.0 589970.0 536180.0 605880.0 496950.0 732050.0 638390.0 False True 470821.4285163509 698241.9302504993 681942.2280030957 776880.75729577 665099.1824738452 499115.13863195747 576571.2697136353 534034.9324609687 551646.0864674358 597647.4036468237 0.7877913057823307 1.1683175162978225 1.1410444081943767 1.2998981549242423 1.1128621632344307 0.8351331162594771 0.9647348356161467 0.8935618714350738 0.9230293365307212 1.0 19.188935057460068 2.7571289433594504 22.372738851003305 0.9183547117502502 1.1188334637584707 0.32616497719621773 0.1271732817838899 227.00564930205888 273514.8597736405 0.038679802970609724 0.04092198284492147 571.6483356171041 -2.7571289433594504 0.20047875200822052 YWDGWFR ddPTM_BT-474_Trastuzumab_2h_R1 2 YWDGWFR 7 0 Q9Y570;Q9Y570-4;Q9Y570-2;Q9Y570-3 Q9Y570 PPME1 Protein phosphatase methylesterase 1 0 ; 144.9 0.005404 2589800000.0 1704500.0 1935370.0 1739010.0 1825330.0 1601300.0 1858190.0 1750900.0 1611060.0 1940630.0 1762910.0 False True 1695323.1613877518 1999787.62049413 1983847.4922541105 2056416.5908446978 1805216.0633513029 1729737.69900876 1666202.2779124614 1731285.477996919 1462387.7396097262 1650399.574496816 1.0272198245716542 1.2116990645152328 1.2020407196596365 1.2460113433267643 1.0938054585367234 1.0480720703870354 1.009575077247862 1.0490098911500048 0.886081020746499 1.0 20.6543839237081 2.7732947944778967 1.9651799557010794 0.9982364468471143 1.1757760788029596 0.5897410420719535 0.06828274899913724 0.2395352071778593 1.827944451021476 0.02487935643779237 0.025121257612048108 593.3279326152763 -2.7732947944778967 0.17753963195584532 YWDVPPPGFEHITPMQYK ddPTM_BT-474_Trastuzumab_2h_R1 3 YWDVPPPGFEHITPMQYK 18 0 P26368-2;P26368;K7ELP8 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 ;; 195.46 2.0879000000000007e-15 722160000.0 1073160.0 1228220.0 1180040.0 1089880.0 1167290.0 1338950.0 1287410.0 1177790.0 1454160.0 1335130.0 False True 1067382.2257992844 1269100.5602253317 1346179.3749084482 1227858.6962520853 1315937.4624301165 1246391.5380492732 1225133.059916206 1265682.6704964375 1095801.7527456952 1249920.8603376977 0.8539598463145132 1.0153447314115969 1.0770116873997477 0.982349151225741 1.0528166255858653 0.9971763633999429 0.9801685040964956 1.0126102465035116 0.8766969073943103 1.0 20.25340532180131 4.741673420542377 23.66524917050051 1.0027545577092631 0.8539597261853328 0.4295082272758749 0.05013155349230224 127.55236676590278 969616.2620631151 0.011560442055473491 0.08144068560499886 55166.24458016078 -4.741673420542377 -0.14879483152393036 YWEAFLPEAK ddPTM_BT-474_Trastuzumab_2h_R1 2 YWEAFLPEAK 10 0 Q13596-2;Q13596;H0YK42;O60749;O60749-2 Q13596-2;O60749 SNX1;SNX2 Sorting nexin-1;Sorting nexin-2 0 ; 152.81 4.0398e-05 171710000.0 583850.0 536590.0 516760.0 538950.0 535430.0 643770.0 574560.0 650510.0 817730.0 665580.0 False True 580706.6164718337 554450.0737744952 589515.3162415597 607181.0147402119 603613.8367577521 599267.6951715753 546766.337767653 699054.3594228495 616211.3985206153 623102.1145682933 0.9319605934481017 0.8898221668829311 0.9460974412677066 0.974448650621075 0.9687237816163674 0.9617487746559304 0.8774907434658148 1.1218937363214994 0.9889412732093645 1.0 19.249109087299466 1.743741583862873 24.99999999999993 1.045413555794603 0.938142620730294 0.5147912396935233 0.044750793545570544 0.7176088895456044 3476.4363968075436 0.020088450554025895 0.011140052004315623 55.42957948770718 -1.743741583862873 -0.10727093506430896 YWGPAS(ph)PTHK ddPTM_BT-474_Trastuzumab_2h_R1 5 YWGPASPTHK 10 0 Q9H6S3;Q9H6S3-3;A0A3B3ISQ4;Q9H6S3-2 Q9H6S3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 YWGPAS(0.999)PT(0.001)HK;YWGPAS(0.968)PT(0.032)HK;YWGPAS(0.963)PT(0.037)HK;YWGPAS(0.766)PT(0.234)HK;YWGPAS(0.961)PT(0.039)HK 203.03 2.2318e-07 8658140000.0 4610730.0 4377980.0 4261460.0 4072130.0 3856090.0 4790310.0 4672950.0 3846210.0 5068120.0 4322340.0 True False 4585906.341980264 4523698.417755202 4861436.526725667 4587661.240475104 4347140.204663917 4459167.144876818 4446901.556097466 4133233.7208586372 3819149.735328652 4046484.5606585466 1.1333062744304474 1.1179329489444516 1.2013975226769407 1.1337399591433222 1.0743004549994972 1.1019854587437519 1.0989542872180766 1.0214381542545594 0.9438191788645063 1.0 21.948237660204285 1.775648833189399 1.181702452876052 0.9672808882989347 1.1344563508125949 0.7801854272471156 0.033509515486608354 0.21350241383616317 0.555838862366151 0.029028036287802313 0.011612989441015964 59.655272407210575 -1.775648833189399 0.16717546251366022 YWLEEAECR ddPTM_BT-474_Trastuzumab_2h_R1 5 YWLEEAECR 9 0 P55884;P55884-2;C9JZG1;C9JQN7 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 ;;;; 231.73 9.9702e-08 2195370000.0 1315050.0 1635560.0 1622540.0 1621250.0 1168050.0 1423680.0 1493250.0 1270970.0 1903170.0 1530170.0 False True 1307969.9169157918 1689998.6258831015 1850979.5286294995 1826500.083769494 1316794.2439252413 1325264.352582238 1421015.7927310455 1365816.2352548898 1434159.2546714442 1432513.240555555 0.9130595654449497 1.1797438083208842 1.2921203631679212 1.2750319034127346 0.9192195971707487 0.925132358335673 0.9919739325969157 0.9534405662632487 1.0011490393731026 1.0 20.450117043032748 3.2290460987855334 24.999540427522046 0.9622473045511766 1.175123654973251 0.4894389727893521 0.099748497081652 162.862797652119 427923.8857496444 0.029699788945948616 0.03594031176581701 1694.5176578106348 -3.2290460987855334 0.21287635042207453 YWPTADGR ddPTM_BT-474_Trastuzumab_2h_R1 8 YWPTADGR 8 0 P52788;H7C2R7;P52788-2 P52788 SMS Spermine synthase 0 ;;;;;;; 192.56 0.00040777 6466910000.0 4073750.0 5168140.0 4852080.0 5005260.0 4285430.0 4479780.0 4939490.0 4147080.0 5536110.0 4652550.0 False True 4051817.382636173 5340158.415693391 5535210.688964597 5638925.402799131 4831154.108766361 4170103.3528678194 4700547.998015783 4456556.168045541 4171809.870573369 4355620.2757515395 0.9302503721899984 1.2260385611259408 1.2708203053833762 1.2946320032055971 1.1091770638644047 0.9574074618220225 1.0791914125720539 1.023173712560741 0.957799258534663 1.0 22.05444675428595 2.9901017282747984 7.52315373802202 1.0145015362162586 1.191814190020887 0.4150504126288864 0.0986705214450272 0.14038530108345462 52.32307834854643 0.029762267663932224 0.033499626615147965 977.4661538682009 -2.9901017282747984 0.17731265380462835 YWQQVIDMNDYQR ddPTM_BT-474_Trastuzumab_2h_R1 4 YWQQVIDMNDYQR 13 0 O60701-2;O60701;O60701-3 O60701-2 UGDH UDP-glucose 6-dehydrogenase 0 ;;; 191.52 8.1371e-06 802840000.0 901410.0 1001990.0 999300.0 983740.0 959440.0 1010870.0 1021000.0 959230.0 1119200.0 1009570.0 False True 896556.9087160658 1035340.6314342538 1139992.7539286916 1108281.3831348652 1081618.9969535836 940990.9362320236 971610.3294012365 1030812.6134712434 843388.1565116524 945138.3782636385 0.9485985643321097 1.0954381445564938 1.2061649173775273 1.1726128243474199 1.144402789928688 0.9956118150241298 1.0280085453584384 1.0906472926906232 0.8923435720186111 1.0 19.85016604506097 2.7375291733549147 24.956539524572044 1.0160258162438467 1.1208815351006223 0.3247875780803644 0.07906593970019823 124.06110896375246 3001720.0782935712 0.02598297634979444 0.025826239605729263 546.4232541569303 -2.7375291733549147 0.10485571885677558 YWSQQIEESTTVVTTQSAEVGAAETTLTELRR ddPTM_BT-474_Trastuzumab_2h_R1 5 YWSQQIEESTTVVTTQSAEVGAAETTLTELRR 32 1 P05783;F8VZY9 P05783 KRT18 Keratin, type I cytoskeletal 18 0 ;;;; 322.07 2.3255999999999993e-104 1669540000.0 192368.0 207880.0 201049.0 223209.0 204812.0 217546.0 225110.0 209690.0 231707.0 222052.0 False True 191332.31206209402 214799.1601338863 229354.9516507653 251467.23651386547 230893.59418416762 202507.55706820052 214220.56929629043 225338.13258424518 174605.91456472964 207880.45125171807 0.9203958857603871 1.03328215250885 1.1033021636702347 1.209672362166316 1.1107037376236182 0.9741539228380276 1.0304988660857544 1.083979427730739 0.8399342675723895 1.0 17.66539457025581 2.7383740606687335 24.999961499332876 1.002299794899492 1.082129199789554 0.1868480220318296 0.08983459917092446 35.42125103517337 4746553.380226298 0.029811984611834853 0.029809434126489818 547.4873142690597 -2.7383740606687335 0.07982940489006185 YWVSGR ddPTM_BT-474_Trastuzumab_2h_R1 1 YWVSGR 6 0 P26640;A0A140T936;H0Y426 P26640 VARS Valine--tRNA ligase 0 137.5 0.029562 107120000.0 122580.0 163490.0 171640.0 168380.0 149400.0 160070.0 140940.0 136320.0 176590.0 147730.0 False True 121920.0428999183 168931.66581820798 195805.42007837535 189696.89073560975 168425.20443682317 149004.7376642498 134122.19375691516 146492.890618934 133071.76068476815 138301.74492198374 0.881551009849468 1.2214716879638983 1.4157841622954903 1.3716160330631988 1.2178096851332723 1.0773887035792906 0.9697794762645527 1.0592266258214666 0.9621842498070734 1.0 17.077459833198624 2.6489178957560284 3.133502520306088 1.008876487460356 1.2423555419801458 0.3747174269712835 0.13578032243677074 0.28624985578641293 5.437487197443104 0.04906449420146273 0.04639296287562865 445.5720041522816 -2.6489178957560284 0.23347905451978979 YYAGWADK ddPTM_BT-474_Trastuzumab_2h_R1 2 YYAGWADK 8 0 P05091;P05091-2;F8VP50;H0YKL3;H0YMG7;O94788-4;O94788-2;O94788-3;O94788 P05091 ALDH2;ALDH1A2 Aldehyde dehydrogenase, mitochondrial;Retinal dehydrogenase 2 0 ; 150.17 0.0011482 847370000.0 1173340.0 1169070.0 1237200.0 943480.0 1138450.0 2045800.0 1172610.0 891820.0 1621270.0 1328740.0 False True 1167022.86781033 1207981.7882322608 1411387.0060648222 1062924.4712628156 1283424.859378188 1904378.6612951944 1115886.3744947931 958372.1369701999 1221729.7324049738 1243938.6756084533 0.9381675244075024 0.9710943247595347 1.1346114030697407 0.8544830160079254 1.031742870081936 1.5309264826609696 0.8970589920350974 0.770433587894859 0.9821462716458942 1.0 20.246483933750635 2.0383090185576362 24.999997633992237 0.8774489338062701 1.0751246694792007 0.15508722750899462 0.18134796310398002 255.34211278843708 166632.1202514236 0.06969810207862492 0.05147536547617236 109.22172179283436 -2.0383090185576362 0.19767573567293062 YYDDIYFDS(ph)DS(ph)EDEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYDDIYFDSDSEDEDR 16 0 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 2 YYDDIYFDS(1)DS(1)EDEDR;YYDDIYFDS(1)DS(1)EDEDR 187.93 1.843e-09 807910000.0 1721040.0 1910290.0 1459620.0 1815860.0 1769110.0 1905350.0 1770370.0 1722230.0 1800250.0 1785010.0 True False 1711774.1118655212 1973872.847855309 1665121.8087555256 2045747.6898156772 1994395.672163507 1773637.6392114593 1684730.439629842 1850751.5479067403 1356602.5096140988 1671089.1335760516 1.0243463843262541 1.181189445970075 0.9964290804717543 1.2242002229036546 1.1934705528816376 1.0613662692042996 1.0081631229476065 1.1075121671973414 0.8118073909744322 1.0 20.67235725612759 1.255314206186971 24.991920929990453 0.9059037210584013 1.1006312904317053 0.4448082301078824 0.08654664402905839 178.21828849332093 265856.5726875132 0.056306459820471264 0.02043895494333222 18.001728448266686 -1.255314206186971 0.19472756937330393 YYDDIYFDS(ph)DSEDEDR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYDDIYFDSDSEDEDR 16 0 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 1 YYDDIYFDS(1)DSEDEDR;YYDDIYFDS(0.994)DS(0.006)EDEDR 296.52 1.1094999999999999e-45 153593000.0 172400.0 256090.0 222120.0 225720.0 291140.0 216347.0 262960.0 209454.0 224040.0 230610.0 True False 171471.81755544062 264613.80084032565 253392.56529834992 254296.12885640695 328214.95327802293 201391.44111605795 250239.62019524892 225084.52106586128 168828.34398219318 215892.27236484582 0.7942471292611293 1.2256751848586 1.1736990978080526 1.177884349777285 1.5202718915448632 0.9328330232020428 1.1590948460274577 1.042577942231675 0.7820027189156764 1.0 17.71995207898093 1.4886621879095026 3.6943969588259735 0.8912752905651302 1.1520231608980898 0.21811882799209392 0.18539260437577765 0.287656200771151 8.028518945446605 0.12413605919785618 0.04697771700970264 30.807906524717563 -1.4886621879095026 0.26074787033295954 YYDSRPGGYGYGYGR ddPTM_BT-474_Trastuzumab_2h_R1 8 YYDSRPGGYGYGYGR 15 1 P98179 P98179 RBM3 RNA-binding protein 3 0 ;;;;;;; 187.16 3.208e-07 16849360000.0 6740600.0 9241540.0 8992600.0 9032230.0 8326290.0 8194580.0 8687120.0 7224900.0 8138190.0 7596360.0 False True 6704309.358551062 9549139.0722711 10258679.914919596 10175709.391904596 9386593.677712679 7628107.972566418 8266890.817578918 7764058.725298824 6132642.120659 7111553.8012290085 0.9427348151950187 1.34276409054528 1.4425370603463206 1.4308700568567794 1.3199075673294494 1.072635908519477 1.162459154306088 1.0917527930333664 0.8623491141414364 1.0 22.761733377610472 2.0457059879924415 1.023095246691744 0.9596840327209318 1.30617722327948 0.44001127630045667 0.14690893184735962 0.5076043337107573 0.9820938035067635 0.11860684021895511 0.05759392344637831 111.09793533172638 -2.0457059879924415 0.3464931905585481 YYEAADTVTQFDNVR ddPTM_BT-474_Trastuzumab_2h_R1 1 YYEAADTVTQFDNVR 15 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2;F8VZW6 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 222.79 3.1495e-12 143440000.0 68271.0 84810.0 88485.0 86119.0 77166.0 84790.0 87536.0 76687.0 89322.0 100910.0 False True 67903.43652162112 87632.84958127243 100942.91887459239 97021.65657001993 86992.63270128435 78928.66687419078 83301.5492600064 82409.77334869564 67309.7899534791 94469.83740660257 0.7187843060358151 0.9276278226678487 1.0685200868942897 1.0270119991043725 0.9208508777977887 0.8354906607330986 0.8817793228697183 0.8723395277373046 0.7125003260434825 1.0 16.527566154702857 2.8834258494242127 5.0157808439901945 0.8565793534555897 0.9475757421151395 0.09629573151974635 0.10791251872139224 0.4825968997742085 17.961510702049825 0.03382149293249672 0.036158729274996915 764.5851335492928 -2.8834258494242127 0.09099638865954984 YYEGYYAAGPGYGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYEGYYAAGPGYGGR 15 0 Q93052;A0A087WZF1;C9JUT4;C9JXK9 Q93052 LPP Lipoma-preferred partner 0 ; 231.42 1.2171e-12 0.0 225750.0 236140.0 249760.0 226880.0 222360.0 247410.0 259600.0 224070.0 289260.0 276540.0 False True 224534.5870831828 243999.7771503555 284924.0370471628 255602.98473746944 250676.2279690225 230307.1290404945 247042.15623169523 240791.2412044055 217975.74888541843 258890.98044219433 0.8672939733152167 0.9424807953278088 1.1005560586178136 0.9872996900119545 0.9682694528054212 0.8895911655443629 0.9542323792421779 0.9300874089669949 0.841959609844687 1.0 17.98198517819169 2.908206139154934 6.225137763495819 0.9226071617342653 0.9807744303686636 0.12344688462005515 0.06586538373808293 0.4781508793017697 26.760580307416774 0.02060854876214921 0.02198380589545791 809.4800300871254 -2.908206139154934 0.05816726863439836 YYEVLGAAATTDYNNNHEGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYEVLGAAATTDYNNNHEGR 20 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJM1;X6REW1;F6S6P2 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 0 ; 295.16 1.3799e-54 1937500000.0 656100.0 680260.0 561150.0 567140.0 603520.0 648950.0 642070.0 576460.0 687040.0 613670.0 False True 652567.6304995634 702902.0428741458 640155.0423967635 638939.865849825 680374.6946567034 604089.6139639838 611010.6211544086 619478.372404568 517728.197864336 574505.0552106802 1.1358779606565104 1.2234914845377303 1.114272253291154 1.1121570820913238 1.184279735201284 1.0514957326919507 1.0635426365923641 1.0782818476286433 0.9011725713614074 1.0 19.13196006199104 2.0280131653684625 0.7198557164043057 0.968324451328144 1.1613552327127645 0.6541880999996228 0.05121293324821549 0.4242826093142741 0.41925703607829634 0.04404563625257812 0.024591632772052785 106.6628454921712 -2.0280131653684625 0.1930307813846205 YYFSHDTD ddPTM_BT-474_Trastuzumab_2h_R1 4 YYFSHDTD 8 0 A0AVT1;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 ;;; 226.81 6.8065e-06 2758840000.0 3186060.0 3889230.0 3559530.0 3699840.0 3347510.0 3827310.0 3498410.0 3093540.0 4205770.0 3791220.0 False True 3168906.6069645425 4018680.6694608135 4060680.884010599 4168239.3646468623 3773795.556253749 3562737.068218649 3329178.543075981 3324395.6634778283 3169314.337930671 3549261.0937732575 0.8928355855600479 1.132258394996946 1.144091904406403 1.1743963756173155 1.0632623119427336 1.0037968394235728 0.937992008792088 0.93664443827761 0.8929504632642675 1.0 21.759087276390478 2.5694953626462036 2.2466283510612812 0.9363188071427173 1.0945770836029287 0.4271554545156788 0.07580431918113095 0.274602757908085 2.753856613963388 0.028911911069081968 0.025653229222333717 371.1037668622182 -2.5694953626462036 0.1582582764602114 YYFYDNYFDLPGALLCAR ddPTM_BT-474_Trastuzumab_2h_R1 1 YYFYDNYFDLPGALLCAR 18 0 Q5TFE4;Q5TFE4-2;Q5QPD0 Q5TFE4 NT5DC1 5-nucleotidase domain-containing protein 1 0 153.75 7.205499999999999e-08 25175000.0 32173.0 46434.0 42628.0 46447.0 33848.0 37291.0 40793.0 36263.0 56760.0 40060.0 False True 31999.78414275634 47979.52762005424 48629.651870781825 52327.185437681794 38158.34216718598 34713.16094357175 38819.68674560688 38969.12919978289 42772.25854503338 37503.33650290851 0.85325166042959 1.2793402426030354 1.2966753469257444 1.3952674699656027 1.0174652637699761 0.9256019378670381 1.03509955021192 1.039084327784028 1.1404920877297475 1.0 15.194731330946594 3.1905610277619094 24.98412154317544 1.0249629744350326 1.2178302486611607 0.27956195463193 0.14092647672624684 142.26729558165195 74050.61557763013 0.04101029876696611 0.049016797197022 1550.8186950308148 -3.1905610277619094 0.19286727422612815 YYGGAEVVDEIELLCQR ddPTM_BT-474_Trastuzumab_2h_R1 1 YYGGAEVVDEIELLCQR 17 0 P34897-3;P34897-2;P34897;G3V540;G3V5L0;G3V4W5;G3V241;G3V3Y8;G3V4T0;G3V4X0;G3V2W0;G3V2E4 P34897-3 SHMT2 Serine hydroxymethyltransferase, mitochondrial 0 97.911 0.0049375 0.0 9021.8 10380.0 6765.2 6696.8 10151.0 12801.0 6500.7 6849.2 11419.0 10145.0 False True 8973.227631216214 10725.492025157497 7717.6813558274625 7544.614193361626 11443.669680309173 11916.097000312731 6186.236305914414 7360.32208353288 8604.94045676068 9497.537414428522 0.9447951863379044 1.1292918950615014 0.8125981524540111 0.7943758328237758 1.2049091444403384 1.2546512301399275 0.6513516121048781 0.7749716334205944 0.9060180635548936 1.0 13.213337774890544 2.223772825899457 24.98951087830612 0.8042949680695355 1.0165018371868533 0.23332919584553757 0.1654969338697001 335.4768837453301 566910.203025064 0.06488993058842037 0.04811930492801877 167.40669631237034 -2.223772825899457 0.2122068691173178 YYGGGSEGGR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYGGGSEGGR 10 0 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 ; 166.68 1.2735e-05 3335000000.0 1955000.0 2440000.0 2458500.0 2358400.0 2325000.0 2164900.0 2389500.0 2036060.0 2695200.0 2338400.0 False True 1944474.4972209195 2521213.924988852 2804635.4303349215 2656973.198187799 2621074.968645339 2015245.5586264406 2273910.756223558 2188001.1361031905 2031004.0738297016 2189161.3099950366 0.8882280571756168 1.151680286636606 1.2811460797931242 1.2136945715497882 1.1972964060155447 0.9205559907465246 1.0387132030159594 0.9994700372756685 0.9277544165232422 1.0 21.0619468338273 2.7434600612420867 24.974456850564085 0.984234767627518 1.1579254006823303 0.40592344046343054 0.10164293073191749 420.51977720588815 2143562.6589968815 0.03249325540971942 0.03349055093582809 553.9366002632837 -2.7434600612420867 0.17369063305481225 YYHSPTNTVHMYPPEMAPSSAPPSTPPT(ph)HK ddPTM_BT-474_Trastuzumab_2h_R1 1 YYHSPTNTVHMYPPEMAPSSAPPSTPPTHK 30 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 YYHSPTNTVHMYPPEMAPSS(0.001)APPS(0.311)T(0.311)PPT(0.376)HK 64.315 0.007512100000000002 358950000.0 93381.0 103220.0 114060.0 90679.0 100550.0 113130.0 106440.0 69875.0 126070.0 101940.0 True False 92878.2470716045 106655.61530219244 130118.65657270739 102158.95210247266 113354.44649345745 105309.58937937497 101291.09055971367 75089.42731806047 95001.73775145107 95434.10192477515 0.9732186419568838 1.1175838945523113 1.3634398390972646 1.070465903089844 1.1877771593932722 1.1034796498885069 1.0613720726324352 0.7868196567433395 0.9954695002666354 1.0 16.542217263039262 1.9621963446391442 5.186907840395353 0.9062178693000624 1.141074977869363 0.4193458331889437 0.10864614599980274 0.1680249967713719 11.31640230025739 0.04749009413277548 0.029479730768152308 91.66348072741127 -1.9621963446391442 0.23485710856930053 YYIADR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYIADR 6 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 ; 117.56 0.052613 1373700000.0 2613600.0 2941300.0 2291900.0 2652900.0 2406300.0 2976400.0 2263900.0 2238200.0 3132400.0 2726900.0 False True 2599528.6679982557 3039199.3924466036 2614579.5984480837 2988756.8679920333 2712728.0417424864 2770648.4736919617 2154386.5080621555 2405225.84934931 2360461.992009561 2552866.9073834517 1.018278179908184 1.1905044417539243 1.024173877175557 1.17074527440028 1.0626202384059589 1.085308625247418 0.8439086666959396 0.9421665666913026 0.924631826744507 1.0 21.283686894745266 2.292432477894017 9.486555390134892 0.9222242312465627 1.095894855055566 0.6202782509961673 0.06286326482686308 0.20215046405008014 33.814093840455605 0.019968880232914814 0.016666089002559406 196.07962961980027 -2.292432477894017 0.17367062380900333 YYIQNGIQSFMQNYSSIDVLLHQSR ddPTM_BT-474_Trastuzumab_2h_R1 1 YYIQNGIQSFMQNYSSIDVLLHQSR 25 0 P78527;P78527-2 P78527 PRKDC DNA-dependent protein kinase catalytic subunit 0 192.47 5.1062000000000006e-18 67127000.0 16194.0 30086.0 30880.0 31974.0 36965.0 29565.0 28963.0 35840.0 25184.0 30215.0 False True 16106.813303322537 31087.394322628945 35227.63558622837 36021.905121631935 41672.27364127954 27521.24113852401 27561.94904059551 38514.56279183243 18977.740648310795 28286.652831637028 0.5694138998767636 1.0990128279815223 1.2453801372648885 1.273459441667961 1.47321331687118 0.9729408884936379 0.9743800089973538 1.3615807787889298 0.6709079635991877 1.0 14.787833851833556 1.2319588629602507 24.998837393804045 0.8354540404909537 1.139877867663328 0.16961654463428366 0.2501493750475772 279.5566844767841 1058547.8352521819 0.21869483162036443 0.05973186947716063 17.059207939146475 -1.2319588629602507 0.3044238271723744 YYITIIDAPGHR ddPTM_BT-474_Trastuzumab_2h_R1 4 YYITIIDAPGHR 12 0 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 ;;; 228.2 2.587e-11 6275800000.0 5494200.0 6553000.0 6089300.0 6471200.0 6264800.0 6327100.0 6415700.0 6041000.0 7288100.0 6384300.0 False True 5464619.837663007 6771112.643627851 6946620.510855578 7290453.25649291 7062585.14562122 5889722.4693913525 6105348.080645949 6491810.095576431 5492045.41053661 5976848.508125772 0.9142978662138803 1.132890123352172 1.162254740338719 1.2197821722570412 1.1816570448488604 0.985422746014732 1.0214995532085975 1.0861593842893202 0.9188865006482844 1.0 22.510953545357648 2.73213727452017 24.930992629789976 1.0157529059053654 1.1304207157824222 0.3191871256094414 0.08595376390850744 654.1422182153832 2538924.238739159 0.028414658991643277 0.027379946273031683 539.6811813663091 -2.73213727452017 0.11466780987705683 YYKVDENGK ddPTM_BT-474_Trastuzumab_2h_R1 5 YYKVDENGK 9 1 P62979;A0A2R8Y422 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ;;;; 155.15 6.7487e-05 3995400000.0 2305750.0 2693760.0 2342580.0 2492630.0 2741660.0 3364500.0 3464580.0 3071370.0 5698360.0 3781320.0 False True 2293336.0981929055 2783420.1731876913 2672394.901929628 2808196.7024248857 3090794.149908031 3131920.034181097 3296985.0294191367 3300571.2255008435 4294075.53211199 3539992.9202490775 0.6478363516138174 0.7862784575828606 0.7549153238819459 0.7932774911389648 0.8731074382178593 0.8847249428851208 0.9313535658673457 0.9323666176339731 1.2130181129881623 1.0 21.75531504434099 2.6377865498330957 0.519198088050671 1.072906612077901 0.6950781201790812 0.7533321752928556 0.07308999349505992 0.49067957711253374 0.2757395110753056 0.06373143646453924 0.07374145973574511 434.2967204415799 -2.6377865498330957 -0.37782849189881973 YYLHDDR ddPTM_BT-474_Trastuzumab_2h_R1 4 YYLHDDR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 ;;; 125.25 0.0040673 3057760000.0 3462690.0 4004570.0 2911240.0 3358920.0 3071710.0 3607550.0 2280700.0 2626070.0 3760490.0 3493550.0 False True 3444047.261781025 4137859.6916363197 3321117.287048297 3784158.927602176 3462874.0610484174 3358168.559759252 2170373.8278799206 2822040.6783132623 2833767.627484367 3270588.648021369 1.0530359003919967 1.265172767642189 1.0154494020694094 1.1570268642287087 1.058792295125031 1.026778027188123 0.6636034247819417 0.8628540553458266 0.8664396328773206 1.0 21.641118887968826 2.4263511871024734 6.755214223871384 0.8331948972268363 1.1090801663824614 0.6038141806886483 0.09990232956258563 0.12397094118862056 12.676927433879252 0.03317960756739166 0.027785540968196524 266.90160604357635 -2.4263511871024734 0.27588526915562517 YYPTEDVPR ddPTM_BT-474_Trastuzumab_2h_R1 5 YYPTEDVPR 9 0 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 RPL6 60S ribosomal protein L6 0 ;;;; 219.72 1.1227e-06 6317000000.0 3282490.0 4069140.0 3625380.0 4037690.0 3603890.0 3720370.0 3858830.0 3353640.0 4170140.0 3948770.0 False True 3264817.4385589217 4204578.86505293 4135801.991632147 4548861.140006315 4062824.029570426 3463189.578708966 3672163.650737881 3603905.646238866 3142464.874013132 3696756.1178879202 0.8831573775616609 1.1373698266725656 1.1187651713402909 1.2305007403640225 1.0990240903129018 0.9368185155496818 0.9933475548925068 0.9748832574592172 0.8500600996661166 1.0 21.81782843862173 2.745034137908267 22.077059516363267 0.9551420912172083 1.1051715656381884 0.38118985635106306 0.09027546241164601 107.59130744029584 366924.3573830636 0.02795123475299375 0.02891702996918582 555.947956085871 -2.745034137908267 0.15002947442098014 YYPTEDVPRK ddPTM_BT-474_Trastuzumab_2h_R1 3 YYPTEDVPRK 10 1 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 RPL6 60S ribosomal protein L6 0 ;; 188.87 1.7205e-06 1659220000.0 1147525.0 1403772.0 1274196.0 1441631.0 1316835.0 1375322.0 1469570.0 1393543.0 1923710.0 1526906.0 False True 1141346.8529020126 1450495.7024219073 1453591.721289827 1624141.3367862431 1484526.1317574554 1280249.2272997503 1398481.2847974298 1497536.254927971 1449637.4468933435 1429457.551830004 0.7984475309818403 1.0147175763036616 1.016883446051914 1.1361941700941054 1.0385241099723124 0.8956189189813746 0.9783300546470106 1.047625550692857 1.0141171698575484 1.0 20.447036348668068 4.738611851025244 7.022591869666008 1.017833681223424 0.7952437432963408 0.5691809911486567 0.05670502526096192 0.08332804239796932 31.82524649294795 0.014457951958403808 0.0880908148909277 54778.716346457426 -4.738611851025244 -0.22258993792708326 YYQDCSGGDRK ddPTM_BT-474_Trastuzumab_2h_R1 1 YYQDCSGGDRK 11 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 0 90.975 0.017776 128670000.0 131000.0 132260.0 114870.0 118610.0 134020.0 157170.0 151410.0 131480.0 183340.0 172050.0 False True 130294.7105554684 136662.19414714165 131042.69753206121 133626.01383864274 151086.652601225 146305.2078383839 144085.71985763084 141291.70524191196 138158.31363013425 161069.62170058442 0.8089341067533881 0.8484665991280824 0.8135779804317113 0.8296164877511344 0.9380207826034573 0.9083352049485385 0.8945555241041958 0.8772088973087797 0.857755250005861 1.0 17.29732489675823 3.260024672575768 22.089326777251873 0.9032189409459778 0.8259876661331276 0.5535639768873248 0.03792853513116863 51.491073822596476 52989.62537160231 0.01012319856358259 0.013684826405788015 1819.8042400355162 -3.260024672575768 -0.07723127481285019 YYRPTEVDFLQGDCTK ddPTM_BT-474_Trastuzumab_2h_R1 1 YYRPTEVDFLQGDCTK 16 1 O60547;O60547-2 O60547 GMDS GDP-mannose 4,6 dehydratase 0 224.67 6.9145e-15 448630000.0 413480.0 377020.0 343620.0 343110.0 353620.0 395260.0 437670.0 372810.0 537680.0 450440.0 False True 411253.8696219462 389568.8827865976 391998.7092014182 386547.6908201391 398651.41093004955 367936.60654195887 416498.2300382362 400630.97529082105 405175.96854287403 421692.5335589145 0.9752457937804347 0.9238221020865457 0.929584182800458 0.9166576594511476 0.9453603732691039 0.8725234080782096 0.9876822492519834 0.9500547043355442 0.9608326832902463 1.0 18.685831952082104 1.2616034343882303 0.8741105951627854 0.9960232824802076 0.9302472203641486 0.3239639432563647 0.029377785703729748 0.5983695620834174 0.9972875187661389 0.02632250545203363 0.009715823071632263 18.264316920863603 -1.2616034343882303 -0.06577606211605891 YYS(ph)DS(ph)DDELTVEQR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 YYS(1)DS(1)DDELTVEQR;YYS(1)DS(1)DDELTVEQR 344.72 9.141199999999999e-70 421900000.0 680450.0 694860.0 620380.0 629280.0 675680.0 763160.0 724010.0 673280.0 808560.0 720440.0 True False 676786.5328051022 717987.9950482601 707724.1115603733 708946.7834784689 761723.842930874 710404.5454854046 688986.8703132119 723523.5724465655 609301.2221489114 674460.9024002849 1.0034481322735547 1.0645361243225073 1.0493182170259399 1.0511310306579003 1.1293817628568772 1.053292404284967 1.0215371533935202 1.0727435346832936 0.903389981510445 1.0 19.36337528892529 1.249677006917696 24.99996179497214 0.9516949838983689 1.0570389358991108 0.5447489847379123 0.03800524633617745 129.79604166577496 291906.3114520101 0.024834501941446957 0.008881570799952257 17.76957361431287 -1.249677006917696 0.10534395200074187 YYTSASGDEMVSLK ddPTM_BT-474_Trastuzumab_2h_R1 1 YYTSASGDEMVSLK 14 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 228.83 3.5144e-12 92499000.0 73352.0 75521.0 71237.0 64699.0 72794.0 89823.0 79086.0 88560.0 91289.0 87176.0 False True 72957.08098217327 78034.67083159136 81266.55039689603 72889.88676626203 82063.88441615872 83613.74743059845 75260.30804214123 95168.79689856798 68792.04915992869 81612.35304487146 0.8939465443676227 0.9561624915861322 0.9957628638916304 0.8931232104799905 1.0055326351274176 1.0245231795317382 0.9221680938517016 1.166107744084318 0.8429122135726927 1.0 16.316499918115603 3.1415536911639514 9.210851383352678 1.0097053044252795 0.9407274036379565 0.0884402730597128 0.08245367677106653 0.5719321089664183 49.171728336216866 0.023279943207226948 0.027859134655012288 1385.3314417499632 -3.1415536911639514 -0.06897790078732302 YYTVFDR ddPTM_BT-474_Trastuzumab_2h_R1 3 YYTVFDR 7 0 A0A1B0GW44;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GV23;H7C469;H7C1V0 A0A1B0GW44 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 ;; 170.06 0.0023005 1221680000.0 2763240.0 2521910.0 1636310.0 1868390.0 1447660.0 2021310.0 1154300.0 1508280.0 2491700.0 1905920.0 False True 2748363.0228648237 2605850.2498232108 1866688.224938513 2104927.982429655 1632010.9200469304 1881581.597351936 1098462.099145785 1620835.512490654 1877653.9220694106 1784282.5538597938 1.540318273537738 1.460447082322352 1.0461842049065926 1.1797055224668507 0.9146594615951008 1.054531185815645 0.6156323709883118 0.9083962116787119 1.0523299227510992 1.0 20.766912663715985 4.391500423155692 0.7659335770984043 0.8929090115007888 1.7969052236920657 0.7090752473766477 0.13728930633088526 0.8895884488142337 0.5528488026302548 0.05290501197810524 0.6333825458646339 24632.042382619322 -4.391500423155692 0.9039962121912769 YYVGHK ddPTM_BT-474_Trastuzumab_2h_R1 4 YYVGHK 6 0 P61326;Q96A72;F5H6N1;P61326-2;F5H124 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 0 ;;; 112.58 0.026876 4146690000.0 5427120.0 5672330.0 5455080.0 4916870.0 5026150.0 5658940.0 5752100.0 5250540.0 7237690.0 5767160.0 False True 5397900.988929716 5861130.075054112 6223107.847594645 5539345.237861963 5666200.410174952 5267750.7975118905 5473848.947844132 5642361.956501891 5454058.279577206 5399094.911285909 0.9997788662033524 1.0855764107429182 1.1526205687894602 1.025976636617905 1.0494722732750452 0.9756729385328149 1.0138456607610216 1.0450570047782404 1.010180107813331 1.0 22.364286147629766 3.5147648481396785 24.7313178442831 1.019467346671279 1.0815084510612807 0.3401038197009877 0.03965238552247662 562.9825320497654 369870.3097494178 0.010589087256135388 0.016399149919973186 3271.6350188869997 -3.5147648481396785 0.06204110439000177 YYVTIIDAPGHR ddPTM_BT-474_Trastuzumab_2h_R1 10 YYVTIIDAPGHR 12 0 P68104;A0A087WVQ9;Q5VTE0;A0A087WV01;A6PW80;Q5JR01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 ;;;;;;;;; 232.0 2.1068e-12 137405980000.0 34170040.0 41674850.0 38755480.0 42234020.0 39827740.0 37459280.0 39236850.0 36653160.0 43274000.0 39434060.0 False True 33986072.301288344 43061972.189271145 44211914.715329014 47580842.601648375 44899566.611490175 34869808.14326024 37338813.66617717 39388404.92017527 32609702.541891746 36917344.529602684 0.9205990499678584 1.1664428397535826 1.1975919524731005 1.2888479170947689 1.2162187498476993 0.9445372788202413 1.0114165615632653 1.0669349440502454 0.8833165807942445 1.0 25.137795447646102 2.7389110266941588 24.999974817251427 0.9946154586801312 1.167888015685157 0.4353437297663276 0.09971963453758793 33.00525355996166 2354849.520954744 0.032454060711182814 0.032497050976040755 548.1646516875347 -2.7389110266941588 0.17327255700502575 YYYVQNVYTPVDEHVYPDHR ddPTM_BT-474_Trastuzumab_2h_R1 2 YYYVQNVYTPVDEHVYPDHR 20 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7 A0A087WXK2 PEG10 Retrotransposon-derived protein PEG10 0 ; 149.57 5.6361e-08 278940000.0 127358.0 147442.0 129533.0 133509.0 143204.0 130696.0 141231.0 74489.0 146308.0 144219.0 False True 126672.31867880413 152349.51783942868 147770.12047898042 150411.22571101369 161440.18056339215 121661.29314529117 134399.11697518706 80047.74742747784 110252.3538267573 135014.81994790226 0.9382104773956131 1.1283910751294954 1.0944733366011228 1.1140349316397444 1.1957219261240104 0.9010958440876063 0.9954397378528315 0.5928811922895991 0.816594458810522 1.0 17.04275824831939 2.2293260201120675 1.974717133643738 0.7727902149400254 1.0908493212101371 0.43833409101781096 0.1264639835669105 0.24172869631728938 1.897227913965299 0.05954642509073082 0.03847243818271971 169.56101988092374 -2.2293260201120675 0.3180591062701117